Sequence Length Modifications Modified sequence Carbamidomethyl (C) Probabilities Oxidation (M) Probabilities Carbamidomethyl (C) Score Diffs Oxidation (M) Score Diffs Acetyl (Protein N-term) Carbamidomethyl (C) Oxidation (M) Missed cleavages Proteins Leading proteins Leading razor protein Type Raw file Experiment MS/MS m/z Charge m/z Mass Uncalibrated - Calibrated m/z [ppm] Uncalibrated - Calibrated m/z [Da] Mass error [ppm] Mass error [Da] Uncalibrated mass error [ppm] Uncalibrated mass error [Da] Max intensity m/z 0 Retention time Retention length Calibrated retention time Calibrated retention time start Calibrated retention time finish Retention time calibration Match time difference Match m/z difference Match q-value Match score Number of data points Number of scans Number of isotopic peaks PIF Fraction of total spectrum Base peak fraction PEP MS/MS count MS/MS scan number MS/MS scan numbers MS3 scan numbers Score Delta score Combinatorics Intensity Reverse Potential contaminant id Protein group IDs Peptide ID Mod. peptide ID MS/MS IDs Best MS/MS Carbamidomethyl (C) site IDs Oxidation (M) site IDs Taxonomy IDs Taxonomy names Mass deficit AAAAAAAAAY 10 Unmodified _AAAAAAAAAY_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;ENST00000557815.1_1_15:70348635-70349989:-|nuORF;nc|ENSG00000106829|Q04727-3|TLE4;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENST00000510826.1_1_6:17290237-17292347:+|nuORF;ENSG00000122877|ENST00000242480|EGR2;nc|ENSG00000122877|P11161-2|EGR2;ENSG00000119919|ENST00000344586|NKX2-3;ENSG00000112183|ENST00000379052|RBM24;nc|ENSG00000112183|Q9BX46-2|RBM24;nc|ENSG00000112183|Q9BX46-5|RBM24;ENSG00000180592|ENST00000449193|SKIDA1 nc|ENSG00000140332|Q04726-2|TLE3;REV__ENSG00000177508|ENST00000329734|IRX3;REV__ENSG00000128713|ENST00000249504|HOXD11 nc|ENSG00000140332|Q04726-2|TLE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 821.4127197265625 1 821.415194 820.407917 0.75108 0.00061695 -0.30026 -0.00024664 0.45082 0.00037031 821.4147021360839 36.547 0.20045 32.264 32.188 32.388 -4.2835 17 12 2 0 0 0 0.14518 1 21307 21307 40.449 8.3316 1 10589000 0 5225;22988;19631 0 0 0 0 -0.009470327164990522 AAAAAALLY 9 Unmodified _AAAAAALLY_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 834.4719848632812 1 834.47198 833.464704 -0.0032305 -2.6958E-06 -0.028618 -2.3881E-05 -0.031848 -2.6576E-05 834.4720972506474 58.801 0.43901 58.801 58.606 59.045 0 45 19 3 0 0 0 0.028712 2 32785 32681;32785 56.048 21.861 1 11875000 1 6193 1 1 1;2 2 0.041310148400384605 AAAAAALLY 9 Unmodified _AAAAAALLY_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.47265625 1 834.47198 833.464704 -0.16441 -0.0001372 1.082 0.00090286 0.91755 0.00076567 834.4728574556647 59.325 0.42354 58.834 58.625 59.048 -0.49079 46 19 3 0 0 0 0.028712 2 32316 32210;32316 56.048 21.861 1 17542000 2 6193 1 1 3;4 4 0.041310148400384605 AAAAAALLY 9 Unmodified _AAAAAALLY_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.4730224609375 1 834.47198 833.464704 0.68119 0.00056843 0.055315 4.6159E-05 0.7365 0.00061459 834.4715252534077 58.959 0.28123 58.899 58.741 59.023 -0.060722 19 13 2 0 0 0 0.1492 1 32077 32077 28.173 7.302 1 2242300 3 6193 1 1 5 5 0.041310148400384605 AAAAAALLY 9 Unmodified _AAAAAALLY_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 834.4727783203125 1 834.47198 833.464704 0.65691 0.00054817 0.17968 0.00014993 0.83659 0.00069811 834.4721032571343 66.397 0.55067 60.221 59.939 60.489 -6.1757 77 31 3 0 0 0 0.047696 3 43291 43043;43170;43291 45.75 13.633 1 97268000 4 6193 1 1 6;7;8 8 0.041310148400384605 AAAAAALLY 9 Unmodified _AAAAAALLY_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.7400817871094 2 417.739628 833.464704 0.89664 0.00037456 0.41019 0.00017135 1.3068 0.00054591 417.73966615075335 66.375 0.28868 60.2 60.079 60.368 -6.1757 23 15 2 0 0 0 0.085487 1 43178 43178 36.466 13.318 1 12833000 5 6193 1 1 9 9 0.041310148400384605 AAAAAQSVY 9 Unmodified _AAAAAQSVY_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1 nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2161254882812 2 426.216517 850.418482 NaN NaN NaN NaN NaN NaN NaN 26.07 1 26.07 25.57 26.57 0 0 0 0 0.54015 1 13388 13388 14.582 2.0501 1 6 10630 2 2 10 10 -0.012710500620528364 AAAAAVVAY 9 Unmodified _AAAAAVVAY_ 0 0 0 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 ENSG00000196781|ENST00000376499|TLE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 806.4415283203125 1 806.44068 805.433404 1.3421 0.0010823 -0.95446 -0.00076971 0.38762 0.00031259 806.4396503590842 47.294 0.2331 42.213 42.085 42.318 -5.0805 24 14 2 0 0 0 0.047696 1 29290 29290 45.75 9.7058 1 11757000 7 9870 3 3 11 11 0.022904418059397358 AAAAAVVYA 9 Unmodified _AAAAAVVYA_ 0 0 0 ENSG00000122756|ENST00000378980|CNTFR ENSG00000122756|ENST00000378980|CNTFR ENSG00000122756|ENST00000378980|CNTFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.4406127929688 1 806.44068 805.433404 -0.36283 -0.0002926 -0.17636 -0.00014222 -0.53919 -0.00043482 806.4405472323976 40.615 0.24872 40.615 40.491 40.739 0 23 13 2 0 0 0 0.3554 1 21913 21913 14.582 0 1 3417600 8 3659 4 4 12 12 0.022904418059397358 AAAALPTLY 9 Unmodified _AAAALPTLY_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 890.5009155273438 1 890.498195 889.490919 -0.22722 -0.00020234 1.8641 0.00166 1.6369 0.0014577 890.5000650945107 64.906 0.32173 64.422 64.254 64.575 -0.48428 21 14 2 0 0 0 0.052168 2 35376 35376;35472 44.407 12.29 1 1528100 9 5989 5 5 13;14 13 0.041752840115123036 AAAAPGARL 9 Unmodified _AAAAPGARL_ 0 0 0 REV__ENSG00000228594|ENST00000422725|FNDC10 REV__ENSG00000228594|ENST00000422725|FNDC10 MSMS AL20221201_MKP_PDAC_01 4 399.2354431152344 2 399.235045 796.455536 NaN NaN NaN NaN NaN NaN NaN 23.728 1 20.901 20.401 21.401 -2.8273 0 0 0 0.17247 1 12859 12859 34.102 1.9855 1 + 10 24399 6 6 15 15 0.049166662743687084 AAAARCPK 8 Unmodified _AAAARCPK_ 0 0 0 REV__ENST00000586076.1_1_17:73872457-73872589:+|nuORF REV__ENST00000586076.1_1_17:73872457-73872589:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2150268554688 2 394.215798 786.417042 -0.36391 -0.00014346 -0.64618 -0.00025473 -1.0101 -0.00039819 394.21512797258913 36.893 0.48894 36.914 36.706 37.195 0.021545 71 22 4 0 0 0 0.80975 1 19612 19612 0.79363 0.79363 1 35484000 + 11 29107 7 7 16 16 0.015290373681978053 AAAAVIPTV 9 Unmodified _AAAAVIPTV_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7473449707031 2 406.747453 811.480354 -0.43686 -0.00017769 0.053997 2.1963E-05 -0.38286 -0.00015573 406.74730439058885 56.242 0.27756 56.242 55.987 56.265 0 19 12 2 0 0 0 0.016494 1 31221 31221 67.035 24.941 1 2292200 12 7051 8 8 17 17 0.06707301357073447 AAAAVIPTV 9 Unmodified _AAAAVIPTV_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.4873657226562 1 812.48763 811.480354 -0.45503 -0.00036971 0.37205 0.00030228 -0.082986 -6.7425E-05 812.4879001025851 56.179 0.36855 56.179 55.953 56.322 0 34 17 3 0 0 0 0.027803 1 31274 31274 56.541 9.6204 1 7529800 13 7051 8 8 18 18 0.06707301357073447 AAAAVIPTV 9 Unmodified _AAAAVIPTV_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.486572265625 1 812.48763 811.480354 -0.76514 -0.00062167 -0.59781 -0.00048572 -1.363 -0.0011074 812.4872216895732 56.687 0.25459 56.202 56.095 56.349 -0.48554 18 13 2 0 0 0 0.078417 1 30802 30802 38.151 0 1 2444200 14 7051 8 8 19 19 0.06707301357073447 AAAAVIPTV 9 Unmodified _AAAAVIPTV_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 812.489013671875 1 812.48763 811.480354 1.723 0.0013999 -0.32124 -0.000261 1.4017 0.0011389 812.4873305787704 64.22 0.40127 58.044 57.802 58.204 -6.1757 39 20 2 0 0 0 0.045537 2 41588 41462;41588 46.921 7.9264 1 20575000 15 7051 8 8 20;21 21 0.06707301357073447 AAAAVIPTV 9 Unmodified _AAAAVIPTV_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.74755859375 2 406.747453 811.480354 1.5644 0.00063632 -0.13552 -5.5121E-05 1.4289 0.00058119 406.7474208522719 64.174 0.32495 57.998 57.861 58.186 -6.1757 23 16 2 0 0 0 0.068777 1 41569 41569 40.449 0 1 10285000 16 7051 8 8 22 22 0.06707301357073447 AAAEVLQVY 9 Unmodified _AAAEVLQVY_ 0 0 0 ENST00000586361.5_1_19:36386996-36387795:-|nuORF;ENST00000588497.2_1_19:36386996-36388558:-|nuORF;nc|ENSG00000167604|Q8NI38|NFKBID;ENSG00000167604|ENST00000606253|NFKBID ENST00000586361.5_1_19:36386996-36387795:-|nuORF ENST00000586361.5_1_19:36386996-36387795:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.279052734375 2 482.260925 962.507297 -0.22155 -0.00010684 -0.26936 -0.0001299 -0.49091 -0.00023675 482.26084985412336 56.114 0.23454 56.114 55.969 56.204 0 17 10 2 0 0 0 0.097209 1 31167 31167 38.151 18.712 1 1549100 17 7635 9 9 23 23 0.02454365177618456 AAAFSAWF 8 Unmodified _AAAFSAWF_ 0 0 0 ENST00000311083.9_1_12:77257103-77272784:-|nuORF ENST00000311083.9_1_12:77257103-77272784:-|nuORF ENST00000311083.9_1_12:77257103-77272784:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7108764648438 2 435.710871 869.407189 NaN NaN NaN NaN NaN NaN NaN 16.512 1 16.512 16.012 17.012 0 0 0 0 0.97444 1 8058 8058 0.79363 0 1 18 11683 10 10 24 24 -0.032738273655240846 AAAILAQQIAH 11 Unmodified _AAAILAQQIAH_ 0 0 0 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 MSMS AL20221201_MKP_PDAC_01 4 369.5497741699219 3 369.548741 1105.62439 NaN NaN NaN NaN NaN NaN NaN 43.219 1 38.455 37.955 38.955 -4.7648 0 0 0 0.93224 1 26225 26225 2.6312 0.54727 1 + 19 22521 11 11 25 25 0.07580523117212579 AAAKAALIY 9 Unmodified _AAAKAALIY_ 0 0 0 ENSG00000120963|ENST00000311212|ZNF706;ENST00000519916.1_1_8:102213783-102213969:-|nuORF ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.2681884765625 2 446.268553 890.522553 0.56791 0.00025344 -0.033946 -1.5149E-05 0.53397 0.00023829 446.26879306746406 38.379 0.3973 38.379 38.306 38.703 0 34 27 2 0 0 0 0.095405 1 20501 20501 34.102 10.954 1 5227200 20 3559 12 12 26 26 0.07291276765465682 AAAKAALIY 9 Unmodified _AAAKAALIY_ 0 0 0 ENSG00000120963|ENST00000311212|ZNF706;ENST00000519916.1_1_8:102213783-102213969:-|nuORF ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2694702148438 2 446.268553 890.522553 1.2024 0.00053658 -0.097933 -4.3705E-05 1.1044 0.00049288 446.2685061091603 42.714 0.39095 38.029 37.869 38.26 -4.6846 58 24 3 0 0 0 0.2143 1 25819 25819 21.747 3.6117 1 28650000 21 3559 12 12 27 27 0.07291276765465682 AAANPTLAF 9 Unmodified _AAANPTLAF_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.4623413085938 1 875.462144 874.454868 0.50784 0.0004446 -1.2039 -0.001054 -0.6961 -0.00060941 875.4612513305941 57.236 0.28057 57.236 57.043 57.324 0 17 12 2 0 0 0 0.013323 1 31824 31824 71.134 29.039 1 1456600 22 780 13 13 28 28 0.012618268346614059 AAANPTLAF 9 Unmodified _AAANPTLAF_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.4617919921875 1 875.462144 874.454868 -0.21885 -0.00019159 0.64017 0.00056044 0.42132 0.00036885 875.4621308657006 57.747 0.2429 57.257 57.126 57.369 -0.48974 14 11 2 0 0 0 0.019303 1 31376 31376 64.236 26.085 1 1916800 23 780 13 13 29 29 0.012618268346614059 AAAPAEVAETI 11 Unmodified _AAAPAEVAETI_ 0 0 0 REV__ENST00000477340.5_1_20:62339420-62365174:+|nuORF REV__ENST00000477340.5_1_20:62339420-62365174:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.77392578125 2 521.774396 1041.53424 NaN NaN NaN NaN NaN NaN NaN 44.709 1 44.393 43.893 44.893 -0.31585 0 0 0 0.76159 1 23860 23860 13.906 0.39817 1 + 24 27609 14 14 30 30 0.015134289981460824 AAAPAIMSY 9 Oxidation (M) _AAAPAIM(Oxidation (M))SY_ AAAPAIM(1)SY AAAPAIM(78)SY 0 0 1 nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4 nc|ENSG00000109920|Q8N3X1-2|FNBP4 nc|ENSG00000109920|Q8N3X1-2|FNBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.72021484375 2 455.720578 909.426604 0.43209 0.00019691 -1.0564 -0.00048143 -0.62433 -0.00028452 455.7201423835248 37.46 0.30828 37.46 37.296 37.604 0 23 16 2 0 0 0 0.010712 1 19968 19968 78.445 55.992 1 3353300 25 2683 15 15 31 31 462 -0.031732391369246216 AAAPFPLLY 9 Unmodified _AAAPFPLLY_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7713623046875 2 481.770929 961.527304 0.49721 0.00023954 0.41889 0.00020181 0.9161 0.00044135 481.7711340800929 99.705 0.14119 93.529 93.432 93.574 -6.1757 15 8 3 0 0 0 0.047696 1 66494 66494 45.75 5.3014 1 16507000 26 3678 16 16 32 32 0.045001609082419236 AAAPHTVSY 9 Unmodified _AAAPHTVSY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7304382324219 2 458.729792 915.445031 0.15147 6.9482E-05 0.71215 0.00032669 0.86362 0.00039617 458.7300339970259 23.253 0.26024 23.253 23.107 23.367 0 26 12 3 0 0 0 0.0083087 1 11851 11851 97.075 47.142 1 2422600 27 9314 17 17 33 33 -0.016073611707156488 AAAPHTVSY 9 Unmodified _AAAPHTVSY_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7298583984375 2 458.729792 915.445031 0.31886 0.00014627 0.22588 0.00010362 0.54473 0.00024989 458.7299314757737 26.281 0.29676 23.33 23.184 23.481 -2.9511 28 16 2 0 0 0 0.0082281 1 14435 14435 92.822 50.983 1 13167000 28 9314 17 17 34 34 -0.016073611707156488 AAAPVVPAV 9 Unmodified _AAAPVVPAV_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.7422180175781 2 397.742171 793.469789 0.36397 0.00014477 0.10847 4.3141E-05 0.47243 0.00018791 397.74237192486055 50.866 0.13747 50.866 50.821 50.959 0 9 7 2 0 0 0 0.047696 1 28039 28039 45.75 17.577 1 2135700 29 8309 18 18 35 35 0.06479318702656656 AAASKGPHL 9 Unmodified _AAASKGPHL_ 0 0 0 ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2405700683594 2 426.240327 850.466101 0.139 5.9247E-05 -0.084934 -3.6202E-05 0.054066 2.3045E-05 426.24025688596026 39.564 0.25677 39.564 39.424 39.681 0 18 11 2 0 0 0 0.1773 1 21234 21234 25.399 3.6527 1 2408800 30 15064 19 19 36 36 0.0348864892880556 AAASKGPHL 9 Unmodified _AAASKGPHL_ 0 0 0 ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 426.240327 850.466101 0.11428 4.871E-05 -0.31785 -0.00013548 -0.20357 -8.677E-05 426.24037509139987 39.909 0.19804 39.612 39.492 39.69 -0.29716 0.0241 -0.00013876 NaN 25.399 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 649250 31 15064 19 19 0.0348864892880556 AAAVVALVY 9 Unmodified _AAAVVALVY_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.5206909179688 1 876.518931 875.511654 0.070406 6.1712E-05 0.025022 2.1932E-05 0.095429 8.3645E-05 876.5193209980223 69.86 0.20032 69.86 69.734 69.934 0 14 8 2 0 0 0 0.46577 1 38893 38893 9.3474 1.4373 1 850520 32 3306 20 20 37 37 0.06891874391192232 AAAVVALVY 9 Unmodified _AAAVVALVY_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7627563476562 2 438.763104 875.511654 0.10335 4.5344E-05 0.15435 6.7724E-05 0.2577 0.00011307 438.76302947961733 70.311 0.22015 69.832 69.693 69.914 -0.47903 13 9 2 0 0 0 0.085487 1 38469 38469 36.466 8.2929 1 1153700 33 3306 20 20 38 38 0.06891874391192232 AAAVVALVY 9 Unmodified _AAAVVALVY_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MSMS AL20221201_MKP_PDAC_01 4 438.5687561035156 2 438.763104 875.511654 NaN NaN NaN NaN NaN NaN NaN 76.385 1 70.209 69.709 70.709 -6.1757 0 0 0 0.15264 1 49962 49962 36.466 8.2929 1 34 3306 20 20 39 39 0.06891874391192232 AAAVVALVY 9 Unmodified _AAAVVALVY_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MSMS AL20221201_MKP_PDAC_01 4 438.7627868652344 2 438.763104 875.511654 NaN NaN NaN NaN NaN NaN NaN 76.525 1 70.349 69.849 70.849 -6.1757 0 0 0 0.15264 1 50058 50058 36.466 8.2929 1 35 3306 20 20 40 40 0.06891874391192232 AAAVVALVY 9 Unmodified _AAAVVALVY_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MSMS AL20221201_MKP_PDAC_01 4 438.7626342773438 2 438.763104 875.511654 NaN NaN NaN NaN NaN NaN NaN 76.843 1 70.667 70.167 71.167 -6.1757 0 0 0 0.15264 1 50259 50259 36.466 8.2929 1 36 3306 20 20 41 41 0.06891874391192232 AAAVYRPP 8 Unmodified _AAAVYRPP_ 0 0 0 ENST00000561344.5_1_15:96826128-96833920:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.4681396484375 1 844.467564 843.460287 0.064157 5.4179E-05 -0.048117 -4.0633E-05 0.01604 1.3545E-05 844.4674539098054 47.938 0.29882 47.585 47.452 47.751 -0.3526 25 14 2 0 0 0 0.5284 2 25676 25676;25778 32.117 9.6643 1 16365000 37 14449 21 21 42;43 42 0.03229550417131577 AAAVYRPP 8 Unmodified _AAAVYRPP_ 0 0 0 ENST00000561344.5_1_15:96826128-96833920:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 844.4680786132812 1 844.467564 843.460287 1.0847 0.00091597 -0.37812 -0.00031931 0.70654 0.00059665 844.4672023589853 53.605 0.66095 47.801 47.59 48.251 -5.8042 97 41 3 0 0 0 0.5953 2 33921 33921;34194 26.341 26.341 1 110390000 38 14449 21 21 44;45 44 0.03229550417131577 AAAVYRPP 8 Unmodified _AAAVYRPP_ 0 0 0 ENST00000561344.5_1_15:96826128-96833920:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.8935241699219 2 422.73742 843.460287 1.4443 0.00061056 0.026447 1.118E-05 1.4708 0.00062174 422.7372414225254 53.652 0.71856 47.848 47.59 48.308 -5.8042 104 44 3 0 0 0 8.7369 1 33819 33819 30.225 5.5509 1 216890000 39 14449 21 21 46 46 0.03229550417131577 AAAVYRPP 8 Unmodified _AAAVYRPP_ 0 0 0 ENST00000561344.5_1_15:96826128-96833920:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 844.467564 843.460287 0.75505 0.00063762 -0.81296 -0.00068651 -0.057903 -4.8898E-05 844.4668545554997 47.668 0.32766 47.629 47.477 47.805 -0.038647 -0.042766 -0.00029092 NaN 32.117 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 19420000 40 14449 21 21 0.03229550417131577 AAAWCRPWWR 10 Unmodified _AAAWCRPWWR_ 0 0 0 REV__ENST00000298743.8_1_9:89561621-89561816:-|nuORF REV__ENST00000298743.8_1_9:89561621-89561816:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.7803039550781 3 434.881948 1301.62402 NaN NaN NaN NaN NaN NaN NaN 29.047 1 29.077 28.577 29.577 0.030106 0 0 0 1.0019 1 15142 15142 0.15932 0.01943 1 + 41 25292 22 22 47 47 -0.014731750836517676 AAAYPHTSL 9 Unmodified _AAAYPHTSL_ 0 0 0 ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7354431152344 2 465.737617 929.460681 NaN NaN NaN NaN NaN NaN NaN 30.853 1 30.853 30.353 31.353 0 0 0 0 0.15618 1 16048 16048 36.044 9.7761 1 42 5429 23 23 48 48 -0.006870746536719707 AACSARAQA 9 Unmodified _AACSARAQA_ 0 0 0 REV__ENSG00000186212|ENST00000334306|SOWAHB REV__ENSG00000186212|ENST00000334306|SOWAHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.404296875 1 848.404312 847.397035 0.20949 0.00017773 -0.78602 -0.00066686 -0.57654 -0.00048914 848.4035109660183 59.503 0.38611 59.503 59.329 59.716 0 36 16 3 0 0 0 0.51218 1 33106 33106 6.7232 6.7232 1 6006500 + 43 23561 24 24 49 49 -0.032767583624149665 AACVFWDN 8 Unmodified _AACVFWDN_ 0 0 0 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.6992797851562 2 463.19727 924.379988 0.76452 0.00035412 -2.623 -0.0012149 -1.8584 -0.00086082 463.195213629359 59.339 0.40949 59.339 59.123 59.532 0 56 17 5 0 0 0 0.79783 1 33027 33027 7.9102 1.7044 1 7346000 44 3646 25 25 50 50 -0.08522678968222408 AADAHYEMI 9 Unmodified _AADAHYEMI_ 0 0 0 REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7294311523438 2 510.726392 1019.43823 0.11806 6.0295E-05 3.2444 0.001657 3.3625 0.0017173 510.72842319015353 43.536 0.18688 43.536 43.418 43.605 0 13 8 2 0 0 0 0.2001 1 23648 23648 23.148 6.2061 1 4692300 + 45 22269 26 26 51 51 -0.07071042113591375 AADDFRTKF 9 Unmodified _AADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.5137634277344 3 357.513696 1069.51926 -0.51319 -0.00018347 0.81432 0.00029113 0.30113 0.00010766 357.51393518545916 33.239 0.31778 33.239 33.068 33.386 0 51 15 4 0 0 0 0.13231 2 17372 17372;17474 27.223 20.593 1 27113000 + 46 167;173 27 27 52;53 52 -0.012720180792030078 AADDFRTKF 9 Unmodified _AADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7654418945312 2 535.766906 1069.51926 -0.32993 -0.00017676 -2.3121 -0.0012388 -2.6421 -0.0014155 535.7650956112846 33.232 0.23918 33.232 33.088 33.327 0 20 11 2 0 0 0 0.0089732 1 17429 17429 86.332 53.546 1 4315200 + 47 167;173 27 27 54 54 -0.012720180792030078 AADDFRTKF 9 Unmodified _AADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.5307922363281 3 357.513696 1069.51926 -0.27636 -9.8802E-05 1.5638 0.00055908 1.2874 0.00046028 357.5141492671762 33.285 0.35947 33.126 32.888 33.247 -0.15919 36 14 4 0 0 0 0.17331 1 17341 17341 21.59 13.435 1 4072000 + 48 167;173 27 27 55 55 -0.012720180792030078 AADDFRTKF 9 Unmodified _AADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5144958496094 3 357.513696 1069.51926 1.8511 0.00066178 -0.32341 -0.00011562 1.5276 0.00054615 357.51354836618293 37.075 0.40282 32.791 32.571 32.974 -4.2835 62 24 3 0 0 0 0.2324 2 21648 21648;21779 19.626 5.2206 1 34418000 + 49 167;173 27 27 56;57 56 -0.012720180792030078 AADDFRTKF 9 Unmodified _AADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.513696 1069.51926 -0.10758 -3.846E-05 2.1764 0.00077809 2.0688 0.00073963 357.5141190588774 33.077 0.14478 33.107 33.041 33.186 0.029743 0.04141 0.001714 NaN 22.775 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 890960 + 50 167;173 27 27 -0.012720180792030078 AADEPVYI 8 Unmodified _AADEPVYI_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;HNRNPLL|p.A139V|1|0.04|ENSG00000143889|chr2:38585774-38585774|G/A|missense_variant nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.4309692382812 1 877.430175 876.422899 0.24334 0.00021352 0.15646 0.00013728 0.3998 0.0003508 877.4304659325035 50.589 0.37489 50.589 50.369 50.744 0 38 17 3 0 0 0 0.17881 2 27947 27834;27947 78.445 31.524 1 11674000 51 5564 28 28 58;59 59 -0.020255856391486304 AADEPVYI 8 Unmodified _AADEPVYI_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;HNRNPLL|p.A139V|1|0.04|ENSG00000143889|chr2:38585774-38585774|G/A|missense_variant nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2196960449219 2 439.218726 876.422899 0.38021 0.00016699 0.79728 0.00035018 1.1775 0.00051717 439.21900877527673 50.6 0.22817 50.6 50.456 50.685 0 17 10 2 0 0 0 0.5284 1 27902 27902 32.117 1.8922 1 1938500 52 5564 28 28 60 60 -0.020255856391486304 AADEPVYI 8 Unmodified _AADEPVYI_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL;HNRNPLL|p.A139V|1|0.04|ENSG00000143889|chr2:38585774-38585774|G/A|missense_variant nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4313354492188 1 877.430175 876.422899 0.62929 0.00055216 0.10954 9.6113E-05 0.73883 0.00064828 877.4304117735671 58.228 0.40879 52.201 52.01 52.418 -6.0275 35 21 2 0 0 0 0.18881 2 37245 37245;37381 74.396 28.646 1 25764000 53 5564 28 28 61;62 61 -0.020255856391486304 AADRINRLQ 9 Unmodified _AADRINRLQ_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7710571289062 2 528.799072 1055.58359 -0.35897 -0.00018982 2.4461 0.0012935 2.0871 0.0011037 528.8003843411279 48.649 0.23069 48.649 48.555 48.786 0 26 10 3 0 0 0 0.18521 1 26675 26675 11.64 0 1 6472100 54 4022 29 29 63 63 0.05802181797616868 AAEAFLLVQ 9 Unmodified _AAEAFLLVQ_ 0 0 0 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 ENSG00000181215|ENST00000531445|C4orf50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 961.8876953125 1 961.535309 960.528032 0.27193 0.00026147 0.48758 0.00046882 0.7595 0.00073029 961.535697161874 97.16 0.27252 96.917 96.772 97.045 -0.24277 18 11 2 0 0 0 0.32871 1 53008 53008 15.847 0 1 761790 55 8956 30 30 64 64 0.04618955557282334 AAEDGCLF 8 Unmodified _AAEDGCLF_ 0 0 0 ENSG00000243710|ENST00000372492|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.1755065917969 2 413.176004 824.337454 NaN NaN NaN NaN NaN NaN NaN 82.749 1 82.252 81.752 82.752 -0.49751 0 0 0 0.97444 1 45299 45299 2.5775 1.7838 1 56 10713 31 31 65 65 -0.08174074096450568 AAEFWRKF 8 Unmodified _AAEFWRKF_ 0 0 0 nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB nc|ENSG00000114423|Q13191-3|CBLB nc|ENSG00000114423|Q13191-3|CBLB MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7772827148438 2 527.777077 1053.5396 1.0436 0.00055081 -0.42979 -0.00022683 0.61384 0.00032397 527.7767511174368 88.763 0.78391 82.587 82.292 83.076 -6.1757 116 37 4 0 0 0 0.6895 1 58714 58714 18.135 3.2967 1 136370000 57 3038 32 32 66 66 0.014971973712817999 AAENDFVTL 9 Unmodified _AAENDFVTL_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;KRT2|p.R275H|1|0.15|ENSG00000172867|chr12:52649951-52649951|C/T|missense_variant CON__P35908 CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.23876953125 2 490.24019 978.465826 0.39951 0.00019586 -1.6589 -0.00081328 -1.2594 -0.00061742 490.2394221178997 61.034 0.30806 61.034 60.863 61.171 0 18 12 2 0 0 0 0.14602 1 34020 34020 28.487 14.979 1 937780 + 58 177 33 33 67 67 -0.024268155817139814 AAEPELAILL 10 Unmodified _AAEPELAILL_ 0 0 0 REV__ENSG00000132622|ENST00000254963|HSPA12B REV__ENSG00000132622|ENST00000254963|HSPA12B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2815551757812 2 520.305332 1038.59611 0.76338 0.00039719 -2.9595 -0.0015399 -2.1961 -0.0011427 520.8046250991557 70.506 0.10918 70.541 70.483 70.592 0.035515 6 4 2 0 0 0 0.23489 1 38836 38836 1.8442 0 1 875440 + 59 19866 34 34 68 68 0.07835780417281057 AAEVQRERY 9 Unmodified _AAEVQRERY_ 0 0 0 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2899169921875 2 561.288537 1120.56252 0.5364 0.00030108 1.6724 0.00093871 2.2088 0.0012398 561.2894248372968 53.136 0.46209 52.684 52.438 52.9 -0.45173 70 23 4 0 0 0 0.39863 2 28657 28657;28770 12.532 1.7076 1 14246000 + 60 22881 35 35 69;70 69 0.007061716981070276 AAEWWTSV 8 Unmodified _AAEWWTSV_ 0 0 0 ENST00000585141.5_1_17:62481823-62493086:-|nuORF;ENSG00000256525|ENST00000539111|POLG2 ENST00000585141.5_1_17:62481823-62493086:-|nuORF ENST00000585141.5_1_17:62481823-62493086:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2248840332031 2 475.224342 948.434132 NaN NaN NaN NaN NaN NaN NaN 14.105 1 14.105 13.605 14.605 0 0 0 0 0.97444 1 6682 6682 0.69038 0 1 61 15602 36 36 71 71 -0.04214763544996458 AAFFMGGK 8 Unmodified _AAFFMGGK_ 0 0 0 REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF REV__ENST00000520726.1_1_3:169521807-169526495:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.7078552246094 2 414.707274 827.399995 1.3403 0.00055584 -0.52344 -0.00021708 0.81689 0.00033877 414.7071999534007 61.453 0.46797 55.305 55.097 55.565 -6.1478 60 23 3 0 0 0 0.77907 2 39649 39523;39649 10.183 5.7604 1 131130000 + 62 22597 37 37 72;73 73 -0.0206088323759559 AAFFVYGILL 10 Unmodified _AAFFVYGILL_ 0 0 0 nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A nc|ENSG00000150625|P51674-3|GPM6A nc|ENSG00000150625|P51674-3|GPM6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.32080078125 2 557.320786 1112.62702 0.64903 0.00036172 -1.2043 -0.00067118 -0.55527 -0.00030946 557.3202839471569 89.963 0.22047 89.461 89.291 89.512 -0.50172 15 11 2 0 0 0 0.57332 1 49181 49181 12.532 0.29089 1 403670 63 6061 38 38 74 74 0.0752097852218867 AAFKPEAY 8 Unmodified _AAFKPEAY_ 0 0 0 ENSG00000183072|ENST00000329198|NKX2-5;nc|ENSG00000183072|P52952-3|NKX2-5;nc|ENSG00000183072|P52952-2|NKX2-5 ENSG00000183072|ENST00000329198|NKX2-5 ENSG00000183072|ENST00000329198|NKX2-5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7293090820312 2 448.729261 895.443968 0.27683 0.00012422 -0.4297 -0.00019282 -0.15287 -6.8596E-05 448.72915445526394 62.012 0.36745 62.012 61.821 62.189 0 24 15 2 0 0 0 0.80232 1 34533 34533 5.2307 0 1 1068100 64 9112 39 39 75 75 -0.007935755396374589 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.450927734375 1 896.451245 895.443968 -0.04777 -4.2824E-05 0.10717 9.6072E-05 0.059399 5.3248E-05 896.4511807819804 62.555 0.4955 62.068 61.809 62.305 -0.48764 59 23 3 0 0 0 0.012158 3 34104 33995;34104;34214 74.396 31.446 1 16549000 65 9130;16446 40 40 76;77;78 77 -0.007935755396260902 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.729248046875 2 448.729261 895.443968 0.55687 0.00024988 -0.63979 -0.00028709 -0.082923 -3.721E-05 448.7289249782628 62.604 0.45261 62.116 61.831 62.284 -0.48764 54 21 3 0 0 0 0.068777 2 34106 34000;34106 40.449 19.577 1 10375000 66 9130;16446 40 40 79;80 80 -0.007935755396260902 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 896.4546508789062 1 896.451245 895.443968 0.54779 0.00049107 2.2427 0.0020105 2.7905 0.0025016 896.4534061626529 62.226 0.23596 62.194 61.985 62.22 -0.032787 15 11 2 0 0 0 0.18465 1 33926 33926 24.674 7.7316 1 2890000 67 9130;16446 40 40 81 81 -0.007935755396260902 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.4508666992188 1 896.451245 895.443968 0.40828 0.000366 0.44856 0.00040212 0.85684 0.00076812 896.4517265629856 69.5 0.58572 63.324 63.029 63.615 -6.1757 74 31 3 0 0 0 0.0094915 3 45348 45233;45348;45469 81.864 41.907 1 114790000 68 9130;16446 40 40 82;83;84 83 -0.007935755396260902 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7296142578125 2 448.729261 895.443968 0.90138 0.00040448 0.66458 0.00029822 1.566 0.00070269 448.7292883808834 69.526 0.55699 63.35 63.058 63.615 -6.1757 70 29 3 0 0 0 0.038285 3 45266 45266;45389;45510 50.855 16.753 1 136490000 69 9130;16446 40 40 85;86;87 85 -0.007935755396260902 AAFPGASLY 9 Unmodified _AAFPGASLY_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 448.729261 895.443968 0.27683 0.00012422 -0.4297 -0.00019282 -0.15287 -6.8596E-05 448.72915445526394 62.012 0.36745 62.012 61.821 62.189 0 -0.072598 0.00011429 NaN 40.449 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1068100 70 9130;16446 40 40 -0.007935755396260902 AAFSAYTPLF 10 Unmodified _AAFSAYTPLF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.2757568359375 2 544.276575 1086.5386 NaN NaN NaN NaN NaN NaN NaN 102.89 1 96.711 96.211 97.211 -6.1757 0 0 0 0.96627 1 69019 69019 4.3292 0 1 71 1103 41 41 88 88 -0.0012106178830890713 AAFYHRYY 8 Unmodified _AAFYHRYY_ 0 0 0 ENSG00000158008|ENST00000374280|EXTL1 ENSG00000158008|ENST00000374280|EXTL1 ENSG00000158008|ENST00000374280|EXTL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2899780273438 2 545.758884 1089.50321 0.41267 0.00022522 1.7333 0.00094595 2.1459 0.0011712 545.7589178529668 58.038 0.28844 58.038 57.891 58.179 0 23 11 3 0 0 0 8.7369 1 32317 32317 2.8892 0 1 6456300 72 6557 42 42 89 89 -0.037956795254331155 AAGKGPAF 8 Unmodified _AAGKGPAF_ 0 0 0 ENST00000512127.5_1_4:169552810-169552978:+|nuORF ENST00000512127.5_1_4:169552810-169552978:+|nuORF ENST00000512127.5_1_4:169552810-169552978:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 718.3895874023438 1 718.388251 717.380974 0.85725 0.00061584 -0.14978 -0.0001076 0.70747 0.00050824 718.3881398751588 53.606 0.51051 47.801 47.515 48.025 -5.8042 54 32 2 0 0 0 0.80624 1 34001 34001 2.8892 2.0956 1 41329000 73 14619 43 43 90 90 0.010979034629940543 AAGKGPAF 8 Unmodified _AAGKGPAF_ 0 0 0 ENST00000512127.5_1_4:169552810-169552978:+|nuORF ENST00000512127.5_1_4:169552810-169552978:+|nuORF ENST00000512127.5_1_4:169552810-169552978:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 718.388251 717.380974 0.3216 0.00023104 -0.41764 -0.00030003 -0.096033 -6.8989E-05 718.387944524173 48.284 0.39138 47.912 47.732 48.123 -0.37172 0.055423 -8.8694E-05 NaN 2.8892 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3968000 74 14619 43 43 0.010979034629940543 AAGKKKCV 8 Unmodified _AAGKKKCV_ 0 0 0 REV__nc|ENSG00000010318|Q9BWX1-2|PHF7 REV__nc|ENSG00000010318|Q9BWX1-2|PHF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7420349121094 2 402.741648 803.468743 NaN NaN NaN NaN NaN NaN NaN 26.046 1 26.073 25.573 26.573 0.026951 0 0 0 0.97444 1 13501 13501 2.5775 1.7838 1 + 75 17045 44 44 91 91 0.05914781062108432 AAGLGPVGGRL 11 Unmodified _AAGLGPVGGRL_ 0 0 0 ENST00000592982.2_1_19:33793807-33793969:+|nuORF ENST00000592982.2_1_19:33793807-33793969:+|nuORF ENST00000592982.2_1_19:33793807-33793969:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.290283203125 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 43.534 1 38.769 38.269 39.269 -4.7648 0 0 0 0.85601 1 26460 26460 9.3831 0 1 76 15726 45 45 92 92 0.07644582400007494 AAGLIPTF 8 Unmodified _AAGLIPTF_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2282409667969 2 395.228897 788.44324 0.01563 6.1776E-06 -0.24508 -9.6864E-05 -0.22945 -9.0687E-05 395.2286626550358 60.408 0.26326 59.917 59.766 60.029 -0.49079 18 12 2 0 0 0 0.19755 1 32889 32889 70.865 11.069 1 5540900 + 77 21761 46 46 93 93 0.040556298113301636 AAGLIPTF 8 Unmodified _AAGLIPTF_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2287902832031 2 395.228897 788.44324 0.1647 6.5095E-05 0.030809 1.2176E-05 0.19551 7.7272E-05 395.22880721213414 60.04 0.44691 59.987 59.754 60.201 -0.053062 69 23 4 0 0 0 0.16583 2 32656 32656;32762 82.939 12.075 1 92768000 + 78 21761 46 46 94;95 94 0.040556298113301636 AAGLIPTF 8 Unmodified _AAGLIPTF_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 395.228897 788.44324 0.01563 6.1776E-06 -0.24508 -9.6864E-05 -0.22945 -9.0687E-05 395.2286626550358 60.408 0.26326 59.917 59.766 60.029 -0.49079 -0.03517 -0.00014211 NaN 82.939 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5540900 + 79 21761 46 46 0.040556298113301636 AAGLIPTF 8 Unmodified _AAGLIPTF_ 0 0 0 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 REV__nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 395.228897 788.44324 0.1647 6.5095E-05 0.030809 1.2176E-05 0.19551 7.7272E-05 395.22880721213414 60.04 0.44691 59.987 59.754 60.201 -0.053062 0.03517 7.5974E-05 NaN 82.939 69 23 4 NaN NaN NaN NaN 0 NaN NaN 0 92768000 + 80 21761 46 46 0.040556298113301636 AAGQLCLLY 9 Carbamidomethyl (C) _AAGQLC(Carbamidomethyl (C))LLY_ AAGQLC(1)LLY AAGQLC(60)LLY 0 1 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7626342773438 2 504.762778 1007.511 0.43389 0.00021901 0.3209 0.00016198 0.75478 0.00038099 504.7628511706136 76.636 0.7395 70.46 70.041 70.78 -6.1757 73 39 2 0 0 0 0.023164 2 49927 49927;50280 60.39 15.983 1 36729000 81 1584 47 47 96;97 96 150 0.007547116798264142 AAHPLPGL 8 Unmodified _AAHPLPGL_ 0 0 0 REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2267456054688 2 388.226688 774.438824 0.65895 0.00025582 0.38104 0.00014793 1.04 0.00040375 388.22680338648263 66.803 0.31423 66.818 66.731 67.045 0.015739 22 14 2 0 0 0 0.70131 1 36675 36675 17.087 5.9721 1 4796100 + 82 20712 48 48 98 98 0.042581653884212756 AAHTDVKPF 9 Unmodified _AAHTDVKPF_ 0 0 0 ENSG00000179943|ENST00000221665|FIZ1 ENSG00000179943|ENST00000221665|FIZ1 ENSG00000179943|ENST00000221665|FIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7586669921875 2 493.258717 984.50288 0.36481 0.00017994 0.13544 6.6809E-05 0.50025 0.00024675 493.2582352318781 41.314 1.1935 36.706 36.1 37.294 -4.6079 301 76 7 0 0 0 0.32871 2 24519 24519;24598 15.847 1.4171 1 1826799999.9999998 83 8872 49 49 99;100 99 0.010009007547182591 AAIGLVIYY 9 Unmodified _AAIGLVIYY_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000447375.1_1_X:153063080-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7835693359375 2 491.784036 981.553519 1.3555 0.00066661 0.18075 8.8891E-05 1.5362 0.0007555 491.7840563758484 97.27 0.71923 91.094 90.722 91.441 -6.1757 98 40 3 0 0 0 0.085487 3 64297 64297;64419;64546 36.466 7.302 1 69599000 84 8928 50 50 101;102;103 101 0.062004300797070755 AAIKNVYL 8 Unmodified _AAIKNVYL_ 0 0 0 nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.267333984375 2 446.268553 890.522553 0.72099 0.00032176 -0.040173 -1.7928E-05 0.68082 0.00030383 446.26890714477923 22.414 0.27532 19.636 19.478 19.753 -2.7784 22 14 2 0 0 0 0.5953 1 12042 12042 26.341 1.6674 1 4825700 85 1981 51 51 104 104 0.07291276765454313 AAIKNVYL 8 Unmodified _AAIKNVYL_ 0 0 0 nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 446.268553 890.522553 0.4565 0.00020372 -1.4692 -0.00065564 -1.0127 -0.00045192 446.2684278437593 19.262 0.093052 19.269 19.226 19.319 0.0078487 -0.1831 -0.00085199 NaN 26.341 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 504670 86 1981 51 51 0.07291276765454313 AAKASRRL 8 Unmodified _AAKASRRL_ 0 0 0 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7751770019531 2 436.774868 871.535184 NaN NaN NaN NaN NaN NaN NaN 80.018 1 80.076 79.576 80.576 0.057587 0 0 0 0.97444 1 44221 44221 0.69038 0 1 87 16140 52 52 105 105 0.09427732948381617 AAKDGTKDGLE 11 Unmodified _AAKDGTKDGLE_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.78076171875 2 552.78021 1103.54587 0.18665 0.00010318 2.1686 0.0011987 2.3552 0.0013019 552.7806733570093 20.482 0.14623 20.492 20.388 20.535 0.010553 9 7 2 0 0 0 0.7187 1 10449 10449 2.4985 0.19575 1 415720 88 2227 53 53 106 106 -0.0017637397850194247 AAKFSHLA 8 Unmodified _AAKFSHLA_ 0 0 0 REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7377624511719 2 422.73742 843.460287 0.51643 0.00021831 -0.21661 -9.1571E-05 0.29982 0.00012674 422.73731704589875 47.668 0.36993 47.629 47.435 47.805 -0.038647 50 17 4 0 0 0 0.61462 1 25633 25633 24.674 0 1 58733000 + 89 17513 54 54 107 107 0.03229550417120208 AAKGNGLPLA 10 Unmodified _AAKGNGLPLA_ 0 0 0 REV__nc|ENSG00000132164|P48066-2|SLC6A11 REV__nc|ENSG00000132164|P48066-2|SLC6A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2662963867188 2 456.269084 910.523616 1.0369 0.00047309 -3.0684 -0.0014 -2.0315 -0.00092692 456.26735200027014 46.031 0.31013 46.031 45.9 46.21 0 25 14 2 0 0 0 0.27276 1 25148 25148 29.082 4.4077 1 3215700 + 90 19832 55 55 108 108 0.06477491134364755 AAKNQVALNP 10 Unmodified _AAKNQVALNP_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2901000976562 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 18.572 1 18.572 18.072 19.072 0 0 0 0 0.97302 1 9243 9243 3.5965 0.31518 1 91 10277 56 56 109 109 0.05524261191771984 AAKPSPPH 8 Unmodified _AAKPSPPH_ 0 0 0 ENST00000257013.8_1_X:134167023-134167440:+|nuORF ENST00000257013.8_1_X:134167023-134167440:+|nuORF ENST00000257013.8_1_X:134167023-134167440:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 402.2126770019531 2 402.72177 803.428987 0.87144 0.00035095 -0.3139 -0.00012641 0.55754 0.00022453 402.7216114370985 31.952 0.36207 28.256 28.066 28.428 -3.6958 26 19 2 0 0 0 8.7369 1 18059 18059 15.847 10.617 1 26290000 92 11187 57 57 110 110 0.019409773830375343 AAKPTMKRDY 10 Unmodified _AAKPTMKRDY_ 0 0 0 REV__DRD1|p.E132D|1|0.17|ENSG00000184845|chr5:175442704-175442704|C/G|missense_variant REV__DRD1|p.E132D|1|0.17|ENSG00000184845|chr5:175442704-175442704|C/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3109130859375 2 590.81079 1179.60703 0.043959 2.5972E-05 -2.7071 -0.0015994 -2.6631 -0.0015734 590.8092983084479 18.371 0.17952 18.377 18.27 18.45 0.0060482 14 9 2 0 0 0 0.69917 1 9305 9305 2.9952 0.26005 1 665210 + 93 16911 58 58 111 111 0.02440859519924743 AAKPTMKRDY 10 Unmodified _AAKPTMKRDY_ 0 0 0 REV__DRD1|p.E132D|1|0.17|ENSG00000184845|chr5:175442704-175442704|C/G|missense_variant REV__DRD1|p.E132D|1|0.17|ENSG00000184845|chr5:175442704-175442704|C/G|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 590.81079 1179.60703 0.043959 2.5972E-05 -2.7071 -0.0015994 -2.6631 -0.0015734 590.8092983084479 18.371 0.17952 18.377 18.27 18.45 0.0060482 0 0 NaN 2.9952 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 665210 + 94 16911 58 58 0.02440859519924743 AAKPWGDP 8 Unmodified _AAKPWGDP_ 0 0 0 REV__ENST00000600155.1_1_21:35321519-35323434:+|nuORF REV__ENST00000600155.1_1_21:35321519-35323434:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.4269409179688 1 841.420279 840.413003 -0.10356 -8.7137E-05 -0.28333 -0.0002384 -0.38689 -0.00032554 841.4196898124757 53.643 0.38575 53.58 53.481 53.866 -0.063423 60 25 3 0 0 0 0.75262 1 29147 29147 12.532 0 1 29393000 + 95 29246 59 59 112 112 -0.013587288538701614 AAKSMIEISR 10 Unmodified _AAKSMIEISR_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant;ENST00000368256.3_1_1:156302875-156308050:-|nuORF nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8885498046875 3 369.205986 1104.59613 0.63781 0.00023548 1.1015 0.00040669 1.7393 0.00064218 369.20622476177687 50.739 0.21593 50.685 50.55 50.766 -0.053875 22 10 3 0 0 0 0.23489 1 27389 27389 2.8433 0.93691 1 2889100 96 6997 60 60 113 113 0.0480145714561786 AALALRFDKP 10 Unmodified _AALALRFDKP_ 0 0 0 ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-4|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8856201171875 3 367.885353 1100.63423 0.081545 2.9999E-05 -0.065859 -2.4229E-05 0.015686 5.7707E-06 367.8854188651936 28.587 0.18676 28.617 28.52 28.706 0.029564 11 6 2 0 0 0 0.69126 1 14911 14911 3.8763 0.28927 1 988090 97 2456 61 61 114 114 0.08793711122598324 AALGAREASSL 11 Unmodified _AALGAREASSL_ 0 0 0 REV__ENSG00000215612|ENST00000400677|HMX1 REV__ENSG00000215612|ENST00000400677|HMX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2845458984375 2 523.285463 1044.55637 0.45572 0.00023847 0.36085 0.00018883 0.81657 0.0004273 523.2857007000849 28.095 0.18563 28.048 27.928 28.113 -0.046408 9 6 2 0 0 0 0.01584 1 14497 14497 61.602 6.0992 1 6135400 + 98 24344 62 62 115 115 0.03587653466570373 AALLFRHRT 9 Unmodified _AALLFRHRT_ 0 0 0 ENST00000263269.3_1_19:48946008-48947172:+|nuORF ENST00000263269.3_1_19:48946008-48947172:+|nuORF ENST00000263269.3_1_19:48946008-48947172:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2169799804688 3 362.217325 1083.63015 NaN NaN NaN NaN NaN NaN NaN 16.76 1 16.765 16.265 17.265 0.0050564 0 0 0 0.85737 1 8419 8419 0.26902 0 1 99 11285 63 63 116 116 0.09167666419557463 AALLHGETRK 10 Unmodified _AALLHGETRK_ 0 0 0 ENST00000480406.6_1_10:92654546-92665092:+|nuORF;ENSG00000148688|ENST00000371703|RPP30;nc|ENSG00000148688|P78346-2|RPP30;ENST00000479678.1_1_10:92655618-92660433:+|nuORF ENST00000480406.6_1_10:92654546-92665092:+|nuORF ENST00000480406.6_1_10:92654546-92665092:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8799438476562 3 365.88049 1094.61964 NaN NaN NaN NaN NaN NaN NaN 16.732 1 16.732 16.232 17.232 0 0 0 0 0.94046 1 8185 8185 6.1918 0 1 100 5954 64 64 117 117 0.07611638974458401 AALLWAEA 8 Unmodified _AALLWAEA_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7318420410156 2 422.731803 843.449054 0.45846 0.0001938 -0.087544 -3.7007E-05 0.37091 0.0001568 422.73165267785146 88.297 0.43951 87.793 87.561 88 -0.50423 51 19 3 0 0 0 0.67481 1 48226 48226 19.439 0 1 5062600 101 887 65 65 118 118 0.021067283229740497 AALNFAINSY 10 Unmodified _AALNFAINSY_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7802124023438 2 542.277106 1082.53966 0.71607 0.00038831 -0.36597 -0.00019846 0.35009 0.00018985 542.2769499682674 55.697 0.73799 49.776 49.474 50.212 -5.9211 223 43 7 0 0 0 0.52888 1 35639 35639 14.838 1.3304 1 1889099999.9999998 + 102 20072 66 66 119 119 0.0016915258061089844 AALPPIVDSL 10 Unmodified _AALPPIVDSL_ 0 0 0 ENST00000482429.1_1_6:31548488-31549450:-|nuORF ENST00000482429.1_1_6:31548488-31549450:-|nuORF ENST00000482429.1_1_6:31548488-31549450:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 498.2913818359375 2 498.292225 994.569897 NaN NaN NaN NaN NaN NaN NaN 58.243 1 52.216 51.716 52.716 -6.0275 0 0 0 0.8671 1 37311 37311 9.3831 1.473 1 103 14103 67 67 120 120 0.07239511245791164 AALRKKHA 8 Unmodified _AALRKKHA_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7 ENSG00000264424|ENST00000255381|MYH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7861633300781 2 447.785236 893.555919 1.1113 0.00049762 0.27873 0.00012481 1.39 0.00062243 447.78538063193696 36.897 0.36002 32.614 32.405 32.765 -4.2835 44 21 3 0 0 0 0.74163 1 21534 21534 13.508 4.1604 1 17806000 104 10856;2625;4477;1602 68 68 121 121 0.10488323328024762 AALRKKHA 8 Unmodified _AALRKKHA_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7 ENSG00000264424|ENST00000255381|MYH4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 447.785236 893.555919 0.27064 0.00012119 -0.48899 -0.00021896 -0.21835 -9.7772E-05 447.78499565123127 32.528 0.25722 32.557 32.44 32.698 0.029743 -0.028245 -0.00032099 NaN 13.508 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3036100 105 10856;2625;4477;1602 68 68 0.10488323328024762 AALYHGMA 8 Unmodified _AALYHGMA_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2017822265625 2 417.202356 832.390159 NaN NaN NaN NaN NaN NaN NaN 76.616 1 76.137 75.637 76.637 -0.47945 0 0 0 0.9706 1 41947 41947 6.3541 0 1 106 2166 69 69 122 122 -0.03274071242981336 AAMKKRSR 8 Unmodified _AAMKKRSR_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MSMS AL20221201_MKP_PDAC_01 4 474.2827758789062 2 474.282003 946.549453 NaN NaN NaN NaN NaN NaN NaN 104.7 1 98.528 98.028 99.028 -6.1757 0 0 0 0.97444 1 70100 70100 2.0598 1.3694 1 + 107 22227 70 70 123 123 0.07404062105013054 AAMKLYVTR 9 Unmodified _AAMKLYVTR_ 0 0 0 REV__ENSG00000149133|ENST00000278409|OR5F1 REV__ENSG00000149133|ENST00000278409|OR5F1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2431335449219 3 351.535555 1051.58484 -0.29379 -0.00010328 -1.7443 -0.00061318 -2.0381 -0.00071646 351.5348773784427 29.332 0.189 29.332 29.222 29.411 0 13 8 2 0 0 0 0.21493 1 15138 15138 4.897 1.5774 1 404090 + 108 20982 71 71 124 124 0.06110679842117861 AAMRVHAVG 9 Unmodified _AAMRVHAVG_ 0 0 0 ENST00000427500.7_1_1:155209712-155209820:-|nuORF;ENST00000467918.5_1_1:155209712-155213886:-|nuORF ENST00000427500.7_1_1:155209712-155209820:-|nuORF ENST00000427500.7_1_1:155209712-155209820:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2481689453125 2 456.247629 910.480705 0.71969 0.00032836 1.2306 0.00056144 1.9503 0.0008898 456.2481683930795 46.017 0.56935 41.062 40.745 41.315 -4.9549 75 37 3 0 0 0 0.2001 1 28223 28223 23.148 2.2772 1 30868000 109 13192 72 72 125 125 0.021883978052983366 AAMWWACVTTL 11 Unmodified _AAMWWACVTTL_ 0 0 0 ENST00000373204.5_1_1:36389579-36389801:+|nuORF ENST00000373204.5_1_1:36389579-36389801:+|nuORF ENST00000373204.5_1_1:36389579-36389801:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2495727539062 2 626.796294 1251.57804 -0.15932 -9.9859E-05 1.212 0.00075968 1.0527 0.00065982 626.7965222102005 23.398 0.18197 23.398 23.307 23.489 0 13 8 2 0 0 0 0.30565 1 11934 11934 1.4819 0 1 654300 110 12404 73 73 126 126 -0.037690011007271096 AANPHSFVF 9 Unmodified _AANPHSFVF_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2446899414062 2 495.245609 988.476666 0.043689 2.1637E-05 -0.3513 -0.00017398 -0.30761 -0.00015234 495.2454355768949 51.612 0.35635 51.178 51.008 51.364 -0.43367 52 18 4 0 0 0 0.0085164 2 27899 27787;27899 99.799 65.612 1 34489000 111 4264 74 74 127;128 128 -0.01803368416756257 AANPHSFVF 9 Unmodified _AANPHSFVF_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2452087402344 2 495.245609 988.476666 0.090172 4.4657E-05 -0.03485 -1.7259E-05 0.055322 2.7398E-05 495.24570031443716 51.23 0.25941 51.177 51.047 51.306 -0.053871 24 12 3 0 0 0 0.028475 1 27693 27693 56.177 29.836 1 3828400 112 4264 74 74 129 129 -0.01803368416756257 AANPHSFVF 9 Unmodified _AANPHSFVF_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2456970214844 2 495.245609 988.476666 0.43075 0.00021333 -0.22538 -0.00011162 0.20537 0.00010171 495.2453945699586 55.923 0.52613 50.002 49.766 50.292 -5.9211 74 30 4 0 0 0 0.0090948 2 35663 35535;35663 85.272 51.085 1 102890000 113 4264 74 74 130;131 131 -0.01803368416756257 AANYSSTSTR 10 Unmodified _AANYSSTSTR_ 0 0 0 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 ENSG00000170876|ENST00000306077|TMEM43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2478637695312 2 529.249077 1056.4836 1.6751 0.00088653 -1.2236 -0.00064758 0.45149 0.00023895 529.2480050288444 41.713 0.32499 37.105 36.952 37.277 -4.6079 27 20 2 0 0 0 0.54684 1 25081 25081 13.906 0.39817 1 10176000 114 8036 75 75 132 132 -0.042381003268701534 AAPAAQEPL 9 Unmodified _AAPAAQEPL_ 0 0 0 REV__ENSG00000165238|ENST00000427277|WNK2 REV__ENSG00000165238|ENST00000427277|WNK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2308959960938 2 434.232168 866.449782 NaN NaN NaN NaN NaN NaN NaN 41.613 1 41.613 41.113 42.113 0 0 0 0 0.36554 1 22463 22463 21.747 5.8995 1 + 115 21995 76 76 133 133 0.011215229720392017 AAPAHPPL 8 Unmodified _AAPAHPPL_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.5434875488281 2 387.218863 772.423173 1.5299 0.00059241 -1.3188 -0.00051068 0.21105 8.1724E-05 387.2184130735414 53.678 0.31482 47.874 47.603 47.918 -5.8042 33 19 2 0 0 0 8.7369 1 33753 33753 11.114 0 1 56195000 116 9771 77 77 134 134 0.027858788713615468 AAPAKFFFN 9 Unmodified _AAPAKFFFN_ 0 0 0 REV__ENST00000440223.5_1_2:238875581-238881735:+|nuORF REV__ENST00000440223.5_1_2:238875581-238881735:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2582092285156 2 506.766178 1011.5178 -0.0625 -3.1673E-05 1.9317 0.00097892 1.8692 0.00094725 506.76760794068764 24.807 0.18579 24.807 24.678 24.864 0 12 8 2 0 0 0 0.20528 1 12636 12636 8.5933 0 1 655330 + 117 27075 78 78 135 135 0.01250392622716845 AAPARAPQI 9 Unmodified _AAPARAPQI_ 0 0 0 ENST00000599538.5_1_19:50528609-50528858:-|nuORF ENST00000599538.5_1_19:50528609-50528858:-|nuORF ENST00000599538.5_1_19:50528609-50528858:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7620849609375 2 447.761426 893.5083 -0.034078 -1.5259E-05 0.6836 0.00030609 0.64952 0.00029083 447.7617112010396 29.266 0.24859 29.266 29.142 29.391 0 26 11 3 0 0 0 0.070838 1 15148 15148 39.957 1.8061 1 2712200 118 15787 79 79 136 136 0.057286243371777346 AAPARSPPL 9 Unmodified _AAPARSPPL_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2275695800781 2 440.255977 878.497401 -0.59904 -0.00026373 0.80454 0.0003542 0.2055 9.0475E-05 440.25617852035 30.284 0.18176 30.284 30.181 30.363 0 13 8 2 0 0 0 0.19613 1 15766 15766 12.532 0 1 539890 119 7607 80 80 137 137 0.05329221962904285 AAPARSPPL 9 Unmodified _AAPARSPPL_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 440.255977 878.497401 0.59438 0.00026168 1.2689 0.00055863 1.8632 0.0008203 440.2567225966859 30.301 0.22568 30.22 30.082 30.308 -0.080429 -0.031687 0.00022983 NaN 18.135 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 905040 120 7607 80 80 0.05329221962904285 AAPDCTPSL 9 Unmodified _AAPDCTPSL_ 0 0 0 nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL nc|ENSG00000116990|P12524-2|MYCL nc|ENSG00000116990|P12524-2|MYCL MSMS AL20221201_MKP_PDAC_01 4 437.7037963867188 2 437.702386 873.390218 NaN NaN NaN NaN NaN NaN NaN 25.4 1 22.517 22.017 23.017 -2.8831 0 0 0 0.43505 1 13907 13907 18.135 2.2878 1 121 3273 81 81 138 138 -0.05154116033634182 AAPGDFVDVLL 11 Unmodified _AAPGDFVDVLL_ 0 0 0 REV__ENST00000600466.1_1_19:50304984-50305399:+|nuORF REV__ENST00000600466.1_1_19:50304984-50305399:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.80029296875 2 558.800414 1115.58628 NaN NaN NaN NaN NaN NaN NaN 83.026 1 83.026 82.526 83.526 0 0 0 0 0.93893 1 46050 46050 3.2813 0.70383 1 + 122 23884 82 82 139 139 0.03310592411912694 AAPGVDLTQL 10 Unmodified _AAPGVDLTQL_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7719421386719 2 492.771657 983.528761 0.52167 0.00025706 1.0665 0.00052553 1.5881 0.00078259 492.77168457966263 63.28 0.43299 62.794 62.583 63.016 -0.48617 55 19 4 0 0 0 0.27276 1 34470 34470 29.082 5.061 1 6331200 + 123 169;158 83 83 140 140 0.036337502063247484 AAPKRGKG 8 Unmodified _AAPKRGKG_ 0 0 0 REV__nc|ENSG00000169925|Q15059-2|BRD3 REV__nc|ENSG00000169925|Q15059-2|BRD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.0840454101562 2 392.743037 783.471521 NaN NaN NaN NaN NaN NaN NaN 17.408 1 17.422 16.922 17.922 0.013865 0 0 0 0.97444 1 8654 8654 0 0 1 + 124 22438 84 84 141 141 0.07112372511289777 AAPLENVVRKY 11 Unmodified _AAPLENVVRKY_ 0 0 0 ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1;nc|ENSG00000106459|Q16656-2|NRF1 ENSG00000106459|ENST00000393232|NRF1 ENSG00000106459|ENST00000393232|NRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5754089355469 3 420.575067 1258.70337 -0.0462 -1.9431E-05 1.0141 0.0004265 0.96788 0.00040706 420.5753618800635 29.695 0.15776 29.725 29.653 29.811 0.030106 13 6 3 0 0 0 0.71036 1 15531 15531 1.3296 0 1 1488300 125 2428 85 85 142 142 0.08436750351529554 AAPPLHPA 8 Unmodified _AAPPLHPA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2186279296875 2 387.218863 772.423173 0.4736 0.00018339 1.0375 0.00040175 1.5111 0.00058513 387.21939638493114 47.653 0.48407 47.614 47.299 47.783 -0.038643 36 22 3 0 0 0 0.61999 1 25660 25660 24.21 0 1 8862000 + 126 18837 86 86 143 143 0.027858788713729155 AAPPLHPA 8 Unmodified _AAPPLHPA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1920166015625 2 387.218863 772.423173 0.4736 0.00018339 1.0375 0.00040175 1.5111 0.00058513 387.21939638493114 47.653 0.48407 47.614 47.299 47.783 -0.038643 36 22 3 0 0 0 8.7369 1 25616 25616 11.114 0 1 8862000 + 127 18837 86 86 144 144 0.027858788713729155 AAPPLHPA 8 Unmodified _AAPPLHPA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 387.218863 772.423173 0.58384 0.00022607 -1.2116 -0.00046917 -0.62781 -0.0002431 387.21839299528165 47.924 0.29964 47.571 47.431 47.73 -0.3526 -0.11524 -6.7032E-05 NaN 24.21 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 8306800 + 128 18837 86 86 0.027858788713729155 AAPPLPAHA 9 Unmodified _AAPPLPAHA_ 0 0 0 REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7377014160156 2 422.73742 843.460287 0.51643 0.00021831 -0.21661 -9.1571E-05 0.29982 0.00012674 422.73731704589875 47.668 0.36993 47.629 47.435 47.805 -0.038647 50 17 4 0 0 0 0.1492 1 25739 25739 28.173 7.302 1 58733000 + 129 28987 87 87 145 145 0.03229550417131577 AAPPLPAHA 9 Unmodified _AAPPLPAHA_ 0 0 0 REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 422.73742 843.460287 0.56509 0.00023888 -0.42192 -0.00017836 0.14316 6.052E-05 422.7372649905086 47.934 0.38149 47.582 47.409 47.79 -0.3526 -0.1045 -0.00017593 NaN 28.173 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 38408000 + 130 28987 87 87 0.03229550417131577 AAPPLPAHA 9 Unmodified _AAPPLPAHA_ 0 0 0 REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF REV__ENST00000572382.5_1_17:4846799-4848308:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.73742 843.460287 0.51643 0.00021831 -0.21661 -9.1571E-05 0.29982 0.00012674 422.73731704589875 47.668 0.36993 47.629 47.435 47.805 -0.038647 -0.057201 -2.3457E-06 NaN 28.173 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 58733000 + 131 28987 87 87 0.03229550417131577 AAPQYQKAF 9 Unmodified _AAPQYQKAF_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2665405273438 2 512.266542 1022.51853 0.48769 0.00024983 0.15378 7.8776E-05 0.64147 0.0003286 512.2666351769745 75.594 0.29853 75.642 75.474 75.773 0.047943 23 13 2 0 0 0 0.28047 1 41672 41672 18.135 3.2967 1 1745800 132 4730 88 88 146 146 0.00817187271752573 AAPRAPRVP 9 Unmodified _AAPRAPRVP_ 0 0 0 REV__ENST00000553700.5_2_14:31676673-31676775:-|nuORF REV__ENST00000553700.5_2_14:31676673-31676775:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7825927734375 2 467.782693 933.550834 0.026056 1.2188E-05 -0.79929 -0.0003739 -0.77324 -0.00036171 467.78260379164277 33.574 0.16969 33.603 33.503 33.672 0.028934 11 7 2 0 0 0 0.49272 1 17672 17672 7.9102 0 1 1498200 + 133 28739 89 89 147 147 0.08140019465417936 AAPRFSKLSE 10 Unmodified _AAPRFSKLSE_ 0 0 0 REV__ENSG00000152503|ENST00000513154|TRIM36 REV__ENSG00000152503|ENST00000513154|TRIM36 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8714294433594 3 369.204862 1104.59276 0.037932 1.4005E-05 0.93986 0.000347 0.97779 0.000361 369.2052854974974 18.797 0.1563 18.803 18.683 18.839 0.0060482 10 7 2 0 0 0 0.23862 1 9536 9536 1.9064 0 1 538900 + 134 21125 90 90 148 148 0.044645303632933064 AAPWRPYL 8 Unmodified _AAPWRPYL_ 0 0 0 ENST00000430334.7_1_17:43555284-43555437:-|nuORF ENST00000430334.7_1_17:43555284-43555437:-|nuORF ENST00000430334.7_1_17:43555284-43555437:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2651062011719 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 69.038 1 68.557 68.057 69.057 -0.48071 0 0 0 0.97348 1 37739 37739 5.7604 0.52976 1 135 13239 91 91 149 149 0.03077812342564812 AAPWRWRWRRW 11 Unmodified _AAPWRWRWRRW_ 0 0 0 ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.9366455078125 2 813.936902 1625.85925 NaN NaN NaN NaN NaN NaN NaN 96.447 1 96.44 95.94 96.94 -0.007019 0 0 0 0.9435 1 53566 53566 0 0 1 136 11159 92 92 150 150 0.07135678436134185 AAQHGLPHY 9 Unmodified _AAQHGLPHY_ 0 0 0 ENST00000340634.4_1_3:142681054-142682041:-|nuORF ENST00000340634.4_1_3:142681054-142682041:-|nuORF ENST00000340634.4_1_3:142681054-142682041:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2742309570312 2 497.248683 992.482814 0.70226 0.0003492 1.1686 0.0005811 1.8709 0.0009303 497.2488095523389 81.743 0.39745 81.248 80.994 81.392 -0.4952 25 15 2 0 0 0 0.19298 1 44779 44779 13.508 2.3934 1 552960 137 11960 93 93 151 151 -0.013728501852483532 AAQLTYCSL 9 Unmodified _AAQLTYCSL_ 0 0 0 ENSG00000108839|ENST00000251535|ALOX12 ENSG00000108839|ENST00000251535|ALOX12 ENSG00000108839|ENST00000251535|ALOX12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2394409179688 2 485.239135 968.463718 -0.21775 -0.00010566 -2.1322 -0.0010346 -2.35 -0.0011403 485.23930329571857 24.78 0.22496 24.78 24.66 24.885 0 15 10 2 0 0 0 0.48152 1 12680 12680 8.5933 0 1 420990 138 2612 94 94 152 152 -0.02177567591161278 AAQRPSAALAL 11 Unmodified _AAQRPSAALAL_ 0 0 0 REV__ENSG00000130700|ENST00000252997|GATA5 REV__ENSG00000130700|ENST00000252997|GATA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8772583007812 3 356.876857 1067.60874 0.83933 0.00029954 0.35486 0.00012664 1.1942 0.00042618 356.87702241829993 22.958 0.23355 20.18 20.072 20.305 -2.7784 22 13 2 0 0 0 0.5229 1 12352 12352 12.228 1.9124 1 2702500 + 139 19735 95 95 153 153 0.07764236600155527 AARAIISEL 9 Unmodified _AARAIISEL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2817687988281 2 472.282192 942.549831 0.52645 0.00024863 -0.8554 -0.00040399 -0.32895 -0.00015536 472.2817300243946 50.023 0.19082 50.023 49.905 50.096 0 22 8 3 0 0 0 0.024882 1 27539 27539 58.679 3.9053 1 9148100 140 2711 96 96 154 154 0.0762576030585933 AARAIISEL 9 Unmodified _AARAIISEL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2828369140625 2 472.282192 942.549831 0.92216 0.00043552 -0.92604 -0.00043735 -0.0038752 -1.8302E-06 472.2819259566848 50.354 0.20283 49.962 49.83 50.033 -0.3923 15 9 2 0 0 0 0.05447 1 27095 27095 43.858 5.8843 1 2370100 141 2711 96 96 155 155 0.0762576030585933 AARAIISEL 9 Unmodified _AARAIISEL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2826232910156 2 472.282192 942.549831 1.1009 0.00051992 0.92062 0.00043479 2.0215 0.00095472 472.2821337185959 55.402 0.4024 49.481 49.285 49.688 -5.9211 40 24 2 0 0 0 0.03568 2 35212 35212;35346 52.268 7.8613 1 24334000 142 2711 96 96 156;157 156 0.0762576030585933 AARAVTGVL 9 Unmodified _AARAVTGVL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.2637023925781 2 429.263802 856.513051 -0.31747 -0.00013628 0.31143 0.00013369 -0.0060412 -2.5932E-06 429.2639274939903 34.852 0.29794 34.661 34.517 34.815 -0.19132 31 12 3 0 0 0 0.094149 1 18210 18210 34.402 5.3201 1 12189000 143 597 97 97 158 158 0.07905508479962009 AARAVTGVL 9 Unmodified _AARAVTGVL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2640380859375 2 429.263802 856.513051 0.96734 0.00041524 -0.13601 -5.8383E-05 0.83133 0.00035686 429.2636126066157 39.099 0.56841 34.648 34.361 34.929 -4.4509 86 35 3 0 0 0 0.039985 1 23153 23153 49.933 5.526 1 101470000 144 597 97 97 159 159 0.07905508479962009 AARAVTGVL 9 Unmodified _AARAVTGVL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.263802 856.513051 -0.5077 -0.00021794 -0.85803 -0.00036832 -1.3657 -0.00058626 429.263082600937 34.739 0.36185 34.739 34.636 34.998 0 0.080728 -0.00076258 NaN 49.933 32 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4549100 145 597 97 97 0.07905508479962009 AARAVTGVL 9 Unmodified _AARAVTGVL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 429.263802 856.513051 0.17767 7.6265E-05 0.041664 1.7885E-05 0.21933 9.415E-05 429.2637444783828 34.558 0.21235 34.586 34.478 34.69 0.027401 -0.072636 9.8301E-06 NaN 49.933 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1880100 146 597 97 97 0.07905508479962009 AAREENQWLSH 11 Unmodified _AAREENQWLSH_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.8835144042969 3 447.54958 1339.62691 0.376 0.00016828 -0.21428 -9.59E-05 0.16172 7.238E-05 447.5494498226493 63.574 0.25441 63.574 63.405 63.659 0 40 14 5 0 0 0 0.6889 1 35435 35435 2.4348 0.35082 1 6772300 + 147 18759 98 98 160 160 -0.029316732157894876 AAREENQWLSH 11 Unmodified _AAREENQWLSH_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 447.54958 1339.62691 0.376 0.00016828 -0.21428 -9.59E-05 0.16172 7.238E-05 447.5494498226493 63.574 0.25441 63.574 63.405 63.659 0 0.022813 -0.00015404 NaN 2.4348 40 14 5 NaN NaN NaN NaN 0 NaN NaN 0 6772300 + 148 18759 98 98 -0.029316732157894876 AAREENQWLSH 11 Unmodified _AAREENQWLSH_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 447.54958 1339.62691 0.48938 0.00021902 0.13178 5.8977E-05 0.62116 0.000278 447.54956927803676 64.013 0.24087 63.528 63.413 63.654 -0.48512 -0.022813 0.00031059 NaN 2.4348 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2263200 + 149 18759 98 98 -0.029316732157894876 AARGSLVLP 9 Unmodified _AARGSLVLP_ 0 0 0 ENSG00000162068|ENST00000293973|NTN3 ENSG00000162068|ENST00000293973|NTN3 ENSG00000162068|ENST00000293973|NTN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7693786621094 2 442.271627 882.528701 0.2558 0.00011313 2.739 0.0012114 2.9948 0.0013245 442.27081312336475 62.644 0.13836 62.644 62.589 62.727 0 8 5 3 0 0 0 0.21819 1 34956 34956 2.0598 1.2661 1 392720 150 6832 99 99 161 161 0.08273794996978268 AARHFQEFLNR 11 Unmodified _AARHFQEFLNR_ 0 0 0 REV__ENSG00000145246|ENST00000273859|ATP10D REV__ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.8626708984375 2 694.862734 1387.71092 0.24426 0.00016973 -1.2894 -0.00089598 -1.0452 -0.00072625 694.8619040792574 101.7 0.10162 95.525 95.443 95.545 -6.1757 7 4 2 0 0 0 0.30985 1 68262 68262 26.268 0.86883 1 20592000 + 151 20763 100 100 162 162 0.032569026717965244 AARLEYDAY 9 Unmodified _AARLEYDAY_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.25927734375 2 536.258914 1070.50327 -0.11848 -6.3534E-05 0.54007 0.00028962 0.4216 0.00022608 536.2592793453794 35.347 0.26957 35.347 35.246 35.515 0 22 13 3 0 0 0 0.028475 1 18700 18700 56.177 33.441 1 5556500 152 4380 101 101 163 163 -0.02915724316108026 AARLLVVV 8 Unmodified _AARLLVVV_ 0 0 0 ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10;ENST00000481236.1_1_1:145530952-145532322:+|nuORF ENSG00000143127|ENST00000369304|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.5689086914062 1 840.566549 839.559273 1.5257 0.0012824 0.029028 2.44E-05 1.5547 0.0013068 840.5663751725089 105.31 0.29941 99.13 98.947 99.247 -6.1757 200 75 4 0 0 0 0.80992 2 70438 70438;70577 0.69038 0 1 1126800000 153 5465 102 102 164;165 164 0.13307573382041937 AARPATSTL 9 Unmodified _AARPATSTL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2509155273438 2 444.250892 886.48723 -0.18598 -8.2622E-05 -0.48003 -0.00021325 -0.66601 -0.00029587 444.25066100189673 20.466 0.3904 20.466 20.27 20.66 0 139 46 4 0 0 0 0.013041 2 10332 10234;10332 71.922 14.451 1 14077000 154 3070;16132 103 103 166;167 167 0.03944614237661881 AARPATSTL 9 Unmodified _AARPATSTL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2510375976562 2 444.250892 886.48723 0.44224 0.00019646 -0.35177 -0.00015627 0.090468 4.0191E-05 444.2507607876613 20.352 0.16002 20.362 20.279 20.439 0.010553 18 9 2 0 0 0 0.039985 1 10380 10380 49.933 9.9757 1 1693600 155 3070;16132 103 103 168 168 0.03944614237661881 AARPATSTL 9 Unmodified _AARPATSTL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2511596679688 2 444.250892 886.48723 0.42466 0.00018866 -0.24237 -0.00010767 0.1823 8.0986E-05 444.25077517496624 22.815 0.40669 20.037 19.81 20.217 -2.7784 79 29 3 0 0 0 0.020973 2 12310 12193;12310 62.573 14.227 1 42973000 156 3070;16132 103 103 169;170 170 0.03944614237661881 AARPVSPF 8 Unmodified _AARPVSPF_ 0 0 0 REV__nc|ENSG00000100399|Q6NUI6-2|CHADL REV__nc|ENSG00000100399|Q6NUI6-2|CHADL MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7379150390625 2 422.73742 843.460287 1.4443 0.00061056 0.026447 1.118E-05 1.4708 0.00062174 422.7372414225254 53.652 0.71856 47.848 47.59 48.308 -5.8042 104 44 3 0 0 0 0.61462 3 33981 33841;33981;34119 24.674 3.5533 1 216890000 + 157 18061 104 104 171;172;173 172 0.03229550417131577 AARRRRPGGAL 11 Unmodified _AARRRRPGGAL_ 0 0 0 REV__ENST00000423674.5_1_2:10443024-10443183:+|nuORF REV__ENST00000423674.5_1_2:10443024-10443183:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.2447509765625 3 394.242645 1179.70611 NaN NaN NaN NaN NaN NaN NaN 108.44 1 102.26 101.76 102.76 -6.1757 0 0 0 0.94165 1 72475 72475 0.45452 0 1 + 158 26871 105 105 174 174 0.12344063319710585 AARRRRRRHQ 10 Unmodified _AARRRRRRHQ_ 0 0 0 REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF REV__ENST00000341744.7_2_20:56227391-56284786:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.5704650878906 3 454.943592 1361.80895 0.54842 0.0002495 2.2431 0.0010205 2.7915 0.00127 455.2783029615016 55.105 0.33877 55.036 54.859 55.198 -0.068737 35 16 3 0 0 0 0.23993 1 29915 29915 1.7423 0.63252 1 4997600 + 159 25710 106 106 175 175 0.14251568831014083 AARSQLETY 9 Unmodified _AARSQLETY_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7645263671875 2 519.764363 1037.51417 -0.05803 -3.0162E-05 1.0772 0.0005599 1.0192 0.00052974 519.7648550388363 23.883 0.32196 23.883 23.694 24.016 0 25 15 2 0 0 0 0.1685 1 12168 12168 26.268 8.1218 1 1803500 160 7726 107 107 176 176 -0.0030832194179311045 AARSQLETY 9 Unmodified _AARSQLETY_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7650756835938 2 519.764363 1037.51417 0.63092 0.00032793 0.67055 0.00034853 1.3015 0.00067646 519.7643599667877 26.677 0.20423 23.726 23.619 23.823 -2.9511 16 10 2 0 0 0 0.085319 1 14711 14711 36.506 5.8697 1 6849600 161 7726 107 107 177 177 -0.0030832194179311045 AARTQLETY 9 Unmodified _AARTQLETY_ 0 0 0 nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000465876.5_1_1:60281005-60331594:+|nuORF nc|ENSG00000134709|Q9UJC3-2|HOOK1 nc|ENSG00000134709|Q9UJC3-2|HOOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2734985351562 2 526.772188 1051.52982 -0.10079 -5.3091E-05 0.87844 0.00046274 0.77765 0.00040964 526.7729021826757 25.631 0.20901 25.631 25.486 25.695 0 22 9 3 0 0 0 0.10247 1 13119 13119 32.786 12.332 1 2624200 162 4632 108 108 178 178 0.006119645752505676 AARVGNAVL 9 Unmodified _AARVGNAVL_ 0 0 0 REV__ENSG00000115592|ENST00000439262|PRKAG3;REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 REV__ENSG00000115592|ENST00000439262|PRKAG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2478942871094 2 435.761426 869.5083 -0.45792 -0.00019954 0.9096 0.00039637 0.45168 0.00019682 435.7617018421937 26.966 0.18772 26.966 26.846 27.033 0 15 8 2 0 0 0 0.13712 1 13891 13891 23.148 0 1 1234200 + 163 18994;18520 109 109 179 179 0.0683262433717573 AARVIDRF 8 Unmodified _AARVIDRF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.275146484375 2 474.274701 946.534849 NaN NaN NaN NaN NaN NaN NaN 32.006 1 31.877 31.377 32.377 -0.12915 0 0 0 0.38147 1 16656 16656 56.177 32.156 1 164 10908 110 110 180 180 0.059443132285082356 AARVVLHPDF 10 Unmodified _AARVVLHPDF_ 0 0 0 nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1 nc|ENSG00000127241|P48740-4|MASP1 nc|ENSG00000127241|P48740-4|MASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.8138427734375 2 562.81419 1123.61383 NaN NaN NaN NaN NaN NaN NaN 36.607 1 36.607 36.107 37.107 0 0 0 0 0.91523 1 19427 19427 7.2892 2.5332 1 165 3993 111 111 181 181 0.056965404627817406 AARVVLTSL 9 Unmodified _AARVVLTSL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2923278808594 2 465.292559 928.570566 0.90921 0.00042305 -1.111 -0.00051695 -0.20182 -9.3906E-05 465.29204158564437 49.639 0.27237 49.59 49.45 49.723 -0.048828 22 13 2 0 0 0 0.011968 1 26805 26805 74.929 26.583 1 4197100 166 5029 112 112 182 182 0.10342350685516521 AARVVLTSL 9 Unmodified _AARVVLTSL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MSMS AL20221201_MKP_PDAC_01 4 465.2925415039062 2 465.292559 928.570566 NaN NaN NaN NaN NaN NaN NaN 55.018 1 49.097 48.597 49.597 -5.9211 0 0 0 0.053277 1 34970 34970 56.177 16.22 1 167 5029 112 112 183 183 0.10342350685516521 AASAYKALFAG 11 Unmodified _AASAYKALFAG_ 0 0 0 nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 MSMS AL20221201_MKP_PDAC_01 4 535.289306640625 2 535.287474 1068.5604 NaN NaN NaN NaN NaN NaN NaN 33.591 1 29.606 29.106 30.106 -3.9853 0 0 0 0.71476 1 19277 19277 16.149 1.3108 1 168 9667 113 113 184 184 0.028857429602794582 AASEKRLHAL 10 Unmodified _AASEKRLHAL_ 0 0 0 nc|ENSG00000168936|A0AVI4-2|TMEM129;ENSG00000168936|ENST00000382936|TMEM129 nc|ENSG00000168936|A0AVI4-2|TMEM129 nc|ENSG00000168936|A0AVI4-2|TMEM129 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8804321289062 3 365.88049 1094.61964 1.1267 0.00041223 -0.32076 -0.00011736 0.80593 0.00029487 365.88050387428365 17.638 0.14909 15.052 14.995 15.144 -2.5866 29 24 2 0 0 0 0.41271 1 9222 9222 20.871 9.9722 1 4000700 169 7818 114 114 185 185 0.07611638974458401 AASEQARQL 9 Unmodified _AASEQARQL_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7196350097656 2 487.256705 972.498858 -0.33993 -0.00016563 0.71525 0.00034851 0.37533 0.00018288 487.25714443140237 18.877 0.23279 18.877 18.75 18.983 0 34 19 2 0 0 0 0.51218 1 9461 9461 6.7232 0.36906 1 1762000 170 10878 115 115 186 186 0.011508112609931231 AASFPNLFF 9 Unmodified _AASFPNLFF_ 0 0 0 REV__ENST00000263097.8_1_19:1037895-1038084:+|nuORF REV__ENST00000263097.8_1_19:1037895-1038084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2582092285156 2 507.258185 1012.50182 -0.063272 -3.2095E-05 -0.19509 -9.8962E-05 -0.25836 -0.00013106 507.25791518705404 24.653 0.080402 24.653 24.637 24.718 0 6 5 2 0 0 0 0.41742 1 12636 12636 11.64 0 1 501630 + 171 25038 116 116 187 187 -0.003933136141995419 AASGVRDQVA 10 Unmodified _AASGVRDQVA_ 0 0 0 REV__ENST00000565069.5_1_16:1027006-1031247:-|nuORF REV__ENST00000565069.5_1_16:1027006-1031247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2577209472656 2 487.256705 972.498858 -0.33993 -0.00016563 0.71525 0.00034851 0.37533 0.00018288 487.25714443140237 18.877 0.23279 18.877 18.75 18.983 0 34 19 2 0 0 0 0.34249 1 9383 9383 24.991 0.97039 1 1762000 + 172 28880 117 117 188 188 0.011508112609931231 AASKERSGVSL 11 Unmodified _AASKERSGVSL_ 0 0 0 ENSG00000124575|ENST00000244534|H1-3;ENSG00000187837|ENST00000343677|H1-2;ENSG00000168298|ENST00000304218|H1-4 ENSG00000124575|ENST00000244534|H1-3 ENSG00000124575|ENST00000244534|H1-3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8052978515625 2 552.80402 1103.59349 1.1249 0.00062187 1.2479 0.00068983 2.3728 0.0013117 552.8048740735283 19.952 0.30635 17.296 17.149 17.455 -2.6564 45 17 3 0 0 0 0.010954 2 10547 10547;10654 78.61 58.196 1 12224000 173 3802 118 118 189;190 189 0.04583325012345085 AASPPRSF 8 Unmodified _AASPPRSF_ 0 0 0 REV__ENST00000377403.6_1_1:9329897-9329960:+|nuORF REV__ENST00000377403.6_1_1:9329897-9329960:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.7187194824219 2 416.719227 831.423902 -0.33748 -0.00014063 0.40135 0.00016725 0.063878 2.6619E-05 416.7192414885201 51.33 0.23357 51.276 51.127 51.361 -0.053871 19 11 2 0 0 0 0.79982 1 27759 27759 6.7232 0.36906 1 3487500 + 174 26249 119 119 191 191 0.0014467352042402126 AASPVVAEY 9 Unmodified _AASPVVAEY_ 0 0 0 nc|ENSG00000203896|Q9H400-2|LIME1;ENSG00000203896|ENST00000309546|LIME1 nc|ENSG00000203896|Q9H400-2|LIME1 nc|ENSG00000203896|Q9H400-2|LIME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4581298828125 1 906.456724 905.449448 -0.11768 -0.00010667 -0.49821 -0.0004516 -0.61588 -0.00055827 906.4562218423421 40.267 0.25974 40.267 40.131 40.391 0 21 12 2 0 0 0 0.03568 2 21596 21596;21701 52.268 10.174 1 3799100 175 10232 120 120 192;193 192 -0.007058967478201339 AASPVVAEY 9 Unmodified _AASPVVAEY_ 0 0 0 nc|ENSG00000203896|Q9H400-2|LIME1;ENSG00000203896|ENST00000309546|LIME1 nc|ENSG00000203896|Q9H400-2|LIME1 nc|ENSG00000203896|Q9H400-2|LIME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7323913574219 2 453.732 905.449448 0.26181 0.00011879 -0.10813 -4.9061E-05 0.15368 6.9731E-05 453.73225190866026 40.293 0.25974 40.293 40.131 40.391 0 21 12 2 0 0 0 0.038285 1 21659 21659 50.855 6.448 1 2388400 176 10232 120 120 194 194 -0.007058967478201339 AASRRPTWSW 10 Unmodified _AASRRPTWSW_ 0 0 0 ENST00000577810.1_2_17:37886494-37886687:-|nuORF ENST00000577810.1_2_17:37886494-37886687:-|nuORF ENST00000577810.1_2_17:37886494-37886687:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.313232421875 2 609.312346 1216.61014 NaN NaN NaN NaN NaN NaN NaN 75.942 1 75.942 75.442 76.442 0 0 0 0 0.97855 1 42233 42233 2.9952 0 1 177 15535 121 121 195 195 0.010498706889393361 AASSSARSAAA 11 Unmodified _AASSSARSAAA_ 0 0 0 REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF REV__ENST00000397072.7_1_5:179665329-179706839:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2372741699219 2 475.238513 948.462472 NaN NaN NaN NaN NaN NaN NaN 17.15 1 17.151 16.651 17.651 0.0010548 0 0 0 0.94184 1 8506 8506 1.1933 0.39971 1 + 178 26527 122 122 196 196 -0.013820656357211192 AASTAIYVY 9 Unmodified _AASTAIYVY_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4887084960938 1 958.488024 957.480748 0.29118 0.00027909 -1.3754 -0.0013183 -1.0843 -0.0010392 958.4880518308021 51.505 0.34069 51.505 51.302 51.642 0 35 15 3 0 0 0 0.023164 1 28439 28439 60.39 34.99 1 3985700 179 1205 123 123 197 197 0.00030676286269226694 AASVTTGPNR 10 Unmodified _AASVTTGPNR_ 0 0 0 REV__nc|ENSG00000078403|P55197-1|MLLT10;REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF REV__nc|ENSG00000078403|P55197-1|MLLT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2582397460938 2 487.256705 972.498858 1.1214 0.00054641 1.4063 0.00068524 2.5277 0.0012316 487.2572951764711 19.977 0.32209 17.32 17.133 17.455 -2.6564 40 18 3 0 0 0 0.1899 2 10676 10571;10676 34.932 7.3033 1 7180300 + 180 17627;27448 124 124 198;199 199 0.011508112609931231 AASVTTGPNR 10 Unmodified _AASVTTGPNR_ 0 0 0 REV__nc|ENSG00000078403|P55197-1|MLLT10;REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF REV__nc|ENSG00000078403|P55197-1|MLLT10 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 487.256705 972.498858 1.1214 0.00054641 1.4063 0.00068524 2.5277 0.0012316 487.2572951764711 19.977 0.32209 17.32 17.133 17.455 -2.6564 0.034854 0.00058749 NaN 34.932 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7180300 + 181 17627;27448 124 124 0.011508112609931231 AASVVEAVHM 10 Unmodified _AASVVEAVHM_ 0 0 0 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2580261230469 2 507.257859 1012.50117 -0.14045 -7.1243E-05 -0.4832 -0.00024511 -0.62365 -0.00031635 507.25853623997443 25.782 0.1661 25.782 25.695 25.862 0 12 7 2 0 0 0 0.44373 1 13241 13241 19.257 1.1106 1 1035700 + 182 22596 125 125 200 200 -0.004584763255479629 AASYPGYRL 9 Unmodified _AASYPGYRL_ 0 0 0 REV__nc|nan|Q8N6V4-2|C10orf53 REV__nc|nan|Q8N6V4-2|C10orf53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2609558105469 2 499.258717 996.50288 -0.12351 -6.1661E-05 -0.35758 -0.00017852 -0.48108 -0.00024019 499.25846712720363 29.152 0.52692 29.152 28.943 29.47 0 95 25 5 0 0 0 0.031062 2 15029 15029;15136 54.774 12.934 1 357050000 + 183 30050 126 126 201;202 201 0.004489007547249457 AASYPGYRL 9 Unmodified _AASYPGYRL_ 0 0 0 REV__nc|nan|Q8N6V4-2|C10orf53 REV__nc|nan|Q8N6V4-2|C10orf53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2588195800781 2 499.258717 996.50288 0.45919 0.00022925 -0.011502 -5.7425E-06 0.44769 0.00022351 499.2586641755755 29.159 0.37695 29.096 28.921 29.298 -0.062159 51 16 4 0 0 0 0.047196 2 15028 15028;15130 46.021 15.384 1 128590000 + 184 30050 126 126 203;204 203 0.004489007547249457 AASYPGYRL 9 Unmodified _AASYPGYRL_ 0 0 0 REV__nc|nan|Q8N6V4-2|C10orf53 REV__nc|nan|Q8N6V4-2|C10orf53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2587890625 2 499.258717 996.50288 0.14137 7.0581E-05 0.31795 0.00015874 0.45932 0.00022932 499.2588909097453 28.97 0.27997 29.001 28.847 29.127 0.030106 29 11 4 0 0 0 0.047196 1 15089 15089 46.021 15.384 1 23515000 + 185 30050 126 126 205 205 0.004489007547249457 AATLSDTDHF 10 Unmodified _AATLSDTDHF_ 0 0 0 REV__ENST00000497951.1_1_2:238989991-238990165:+|nuORF REV__ENST00000497951.1_1_2:238989991-238990165:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2509155273438 2 539.246003 1076.47745 3.5561 0.0019176 3.4982 0.0018864 7.0542 0.003804 539.2492309404125 99.506 0.15033 99.47 99.379 99.529 -0.036301 13 5 3 0 0 0 0.50944 1 55287 55287 15.847 1.0089 1 1956400 + 186 27987 127 127 206 206 -0.0577261855839879 AATLVENI 8 Unmodified _AATLVENI_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.46337890625 1 830.46181 829.454533 1.3182 0.0010947 -0.095691 -7.9468E-05 1.2225 0.0010152 830.4616413008494 54.116 0.31717 48.25 48.066 48.383 -5.8653 22 17 2 0 0 0 0.17035 1 34353 34353 81.864 0.25097 1 7407500 + 187 17950 128 128 207 207 0.03298407114800739 AATLVTTKIKK 11 Unmodified _AATLVTTKIKK_ 0 0 0 REV__ENSG00000164615|ENST00000297156|CAMLG REV__ENSG00000164615|ENST00000297156|CAMLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3805541992188 2 587.381906 1172.74926 -0.41734 -0.00024514 -0.48957 -0.00028757 -0.90691 -0.0005327 587.3815044352398 103.61 0.178 103.56 103.49 103.67 -0.047928 8 6 2 0 0 0 0.7453 1 57553 57553 0 0 1 3569000 + 188 21932 129 129 208 208 0.16979395533712704 AATLVTTKIKK 11 Unmodified _AATLVTTKIKK_ 0 0 0 REV__ENSG00000164615|ENST00000297156|CAMLG REV__ENSG00000164615|ENST00000297156|CAMLG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.381906 1172.74926 -0.41734 -0.00024514 -0.48957 -0.00028757 -0.90691 -0.0005327 587.3815044352398 103.61 0.178 103.56 103.49 103.67 -0.047928 0 0 NaN 0 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3569000 + 189 21932 129 129 0.16979395533712704 AATPRKPY 8 Unmodified _AATPRKPY_ 0 0 0 nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446;ENST00000391694.4_1_19:58989172-58992090:+|nuORF nc|ENSG00000083838|Q9NWS9-2|ZNF446 nc|ENSG00000083838|Q9NWS9-2|ZNF446 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7402648925781 2 452.255977 902.497401 0.44517 0.00020133 1.7126 0.00077452 2.1577 0.00097585 452.25687096790205 40.471 0.17138 40.174 40.028 40.199 -0.29716 11 7 2 0 0 0 8.7369 1 21339 21339 6.3541 0.59368 1 831970 190 1376 130 130 209 209 0.042252219628949206 AATPSFSLPAF 11 Unmodified _AATPSFSLPAF_ 0 0 0 REV__ENSG00000175520|ENST00000311659|UBQLN3 REV__ENSG00000175520|ENST00000311659|UBQLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.787353515625 2 554.787307 1107.56006 0.11089 6.1518E-05 2.2339 0.0012394 2.3448 0.0013009 554.7880100102866 69.618 0.34075 69.139 68.949 69.29 -0.47903 35 14 4 0 0 0 0.48615 1 38016 38016 17.113 1.8644 1 2423800 + 191 22878 131 131 210 210 0.010583232404314913 AATPSFSLPAF 11 Unmodified _AATPSFSLPAF_ 0 0 0 REV__ENSG00000175520|ENST00000311659|UBQLN3 REV__ENSG00000175520|ENST00000311659|UBQLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7879028320312 2 554.787307 1107.56006 0.70568 0.0003915 0.96297 0.00053424 1.6687 0.00092575 554.7877495891049 69.065 0.34341 69.096 68.93 69.273 0.030914 40 16 3 0 0 0 0.15484 1 37929 37929 36.127 9.8589 1 8457000 + 192 22878 131 131 211 211 0.010583232404314913 AATPSFSLPAF 11 Unmodified _AATPSFSLPAF_ 0 0 0 REV__ENSG00000175520|ENST00000311659|UBQLN3 REV__ENSG00000175520|ENST00000311659|UBQLN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 554.787307 1107.56006 0.11089 6.1518E-05 2.2339 0.0012394 2.3448 0.0013009 554.7880100102866 69.618 0.34075 69.139 68.949 69.29 -0.47903 0.021175 0.001119 NaN 36.127 35 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2423800 + 193 22878 131 131 0.010583232404314913 AATQDCACLLK 11 Unmodified _AATQDCACLLK_ 0 0 0 REV__ENSG00000253117|ENST00000254627|OC90 REV__ENSG00000253117|ENST00000254627|OC90 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7752075195312 2 568.775559 1135.53657 0.30429 0.00017307 0.080653 4.5874E-05 0.38494 0.00021895 568.7755743515198 85.471 0.41989 79.295 79.075 79.495 -6.1757 45 25 2 0 0 0 0.58349 1 56429 56429 12.175 0.53445 1 26002000 + 194 24507 132 132 212 212 -0.025781818600762563 AATSLRMS 8 Unmodified _AATSLRMS_ 0 0 0 ENST00000545457.6_1_17:18160299-18161973:-|nuORF ENST00000545457.6_1_17:18160299-18161973:-|nuORF ENST00000545457.6_1_17:18160299-18161973:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.7197265625 2 418.71837 835.422187 0.47339 0.00019822 2.4457 0.0010241 2.9191 0.0012223 418.71890266531005 70.239 0.564 70.274 70.094 70.658 0.035507 34 26 2 0 0 0 0.77186 1 38670 38670 10.824 0.64053 1 1298400 195 15092 133 133 213 213 -0.002107035598328366 AATVISGWFP 10 Unmodified _AATVISGWFP_ 0 0 0 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.2801513671875 2 524.776742 1047.53893 0.5516 0.00028947 1.7229 0.00090412 2.2745 0.0011936 524.7779863554559 40.455 0.076042 35.925 35.858 35.934 -4.5294 5 4 2 0 0 0 0.22811 1 24148 24148 14.838 1.3304 1 9132100 196 16118 134 134 214 214 0.01706357931561797 AAVAATAAAL 10 Unmodified _AAVAATAAAL_ 0 0 0 REV__ENST00000366510.3_1_1:246887613-246887664:+|nuORF REV__ENST00000366510.3_1_1:246887613-246887664:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2421264648438 2 415.242535 828.470518 -0.80522 -0.00033436 0.13598 5.6465E-05 -0.66924 -0.0002779 415.2425628400889 27.941 0.20656 27.941 27.804 28.011 0 15 10 2 0 0 0 0.13184 1 14399 14399 42.095 0 1 2092500 + 197 25954 135 135 215 215 0.04942113351694388 AAVAGALVY 9 Unmodified _AAVAGALVY_ 0 0 0 ENSG00000135413|ENST00000257867|LACRT ENSG00000135413|ENST00000257867|LACRT ENSG00000135413|ENST00000257867|LACRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 835.4738159179688 1 834.47198 833.464704 0.023392 1.952E-05 -0.27429 -0.00022889 -0.2509 -0.00020937 834.472002715555 63.888 0.35785 63.403 63.234 63.592 -0.48512 34 19 2 0 0 0 0.46577 1 34796 34796 9.3474 4.1168 1 5675700 198 4703 136 136 216 216 0.04131014840049829 AAVALNEEF 9 Unmodified _AAVALNEEF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2419738769531 2 482.242732 962.470912 NaN NaN NaN NaN NaN NaN NaN 55.793 1 55.793 55.293 56.293 0 0 0 0 0.43505 1 31008 31008 18.135 5.6034 1 199 674 137 137 217 217 -0.01182511719082413 AAVAVVESM 9 Unmodified _AAVAVVESM_ 0 0 0 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4 nc|ENSG00000111642|Q14839-2|CHD4 nc|ENSG00000111642|Q14839-2|CHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4515380859375 1 876.44953 875.442254 0.74859 0.0006561 -0.64567 -0.00056589 0.10293 9.021E-05 876.4490433141299 56.57 0.41603 50.593 50.357 50.773 -5.9769 37 23 2 0 0 0 0.010877 2 36132 35995;36132 77.984 33.577 1 20071000 200 2803 138 138 218;219 219 -0.000449526198735839 AAVAVVESM 9 Unmodified _AAVAVVESM_ 0 0 0 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4 nc|ENSG00000111642|Q14839-2|CHD4 nc|ENSG00000111642|Q14839-2|CHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7289733886719 2 438.728403 875.442254 0.8347 0.00036621 0.17592 7.7182E-05 1.0106 0.00044339 438.72833919903456 56.56 0.3605 50.583 50.395 50.755 -5.9769 35 20 2 0 0 0 0.040472 2 36043 36043;36173 49.669 9.2203 1 27921000 201 2803 138 138 220;221 220 -0.000449526198735839 AAVDAGMAM 9 2 Oxidation (M) _AAVDAGM(Oxidation (M))AM(Oxidation (M))_ AAVDAGM(1)AM(1) AAVDAGM(40)AM(40) 0 0 2 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.6802368164062 2 434.680596 867.346639 -0.47459 -0.00020629 0.11539 5.0158E-05 -0.3592 -0.00015614 434.68063405155317 15.993 0.55674 15.993 15.543 16.1 0 182 132 2 0 0 0 0.068777 1 7681 7681 40.449 24.68 1 1141300 202 443 139 139 222 222 56;57 -0.09234048802431971 AAVDAGMAM 9 2 Oxidation (M) _AAVDAGM(Oxidation (M))AM(Oxidation (M))_ AAVDAGM(1)AM(1) AAVDAGM(43)AM(43) 0 0 2 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.6807556152344 2 434.680596 867.346639 -0.47453 -0.00020627 -0.012094 -5.2569E-06 -0.48662 -0.00021152 434.6806397220824 16.292 0.12191 16.292 16.215 16.336 0 59 33 2 0 0 0 0.058206 1 7910 7910 42.968 22.097 1 1196700 203 443 139 139 223 223 56;57 -0.09234048802431971 AAVDAGMAM 9 2 Oxidation (M) _AAVDAGM(Oxidation (M))AM(Oxidation (M))_ AAVDAGM(1)AM(1) AAVDAGM(57)AM(57) 0 0 2 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.6812133789062 2 434.680596 867.346639 0.76152 0.00033102 -0.27787 -0.00012079 0.48365 0.00021023 434.6807789722621 18.138 0.8377 15.517 15.164 16.001 -2.6215 152 74 3 0 0 0 0.027803 4 9606 9391;9499;9606;9708 56.541 28.368 1 6072200 204 443 139 139 224;225;226;227 226 56;57 -0.09234048802431971 AAVDAGMAM 9 Unmodified _AAVDAGMAM_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 836.3668212890625 1 836.364086 835.35681 1.4488 0.0012117 -0.84521 -0.00070691 0.60355 0.00050479 836.3641067276394 47.803 0.4984 42.57 42.294 42.793 -5.2339 80 29 4 0 0 0 0.2143 3 29544 29544;29581;29681 21.747 0.89125 1 52517000 205 443 139 140 228;229;230 228 -0.0674544107720294 AAVEDLHHY 9 Unmodified _AAVEDLHHY_ 0 0 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENST00000473770.5_1_22:32017296-32019834:-|nuORF;ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1695556640625 3 352.169929 1053.48796 -0.31112 -0.00010957 0.57554 0.00020269 0.26441 9.3119E-05 352.1700400232175 23.715 0.16549 23.715 23.605 23.771 0 14 8 2 0 0 0 0.30202 1 12075 12075 17.113 12.784 1 795520 206 16571 140 141 231 231 -0.0366459111326094 AAVEDLHHY 9 Unmodified _AAVEDLHHY_ 0 0 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENST00000473770.5_1_22:32017296-32019834:-|nuORF;ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1706848144531 3 352.169929 1053.48796 1.1927 0.00042005 0.54107 0.00019055 1.7338 0.0006106 352.1699907698198 26.556 0.17229 23.605 23.502 23.674 -2.9511 13 8 2 0 0 0 0.30202 1 14658 14658 17.113 2.2746 1 3650300 207 16571 140 141 232 232 -0.0366459111326094 AAVGSYVSGWP 11 Unmodified _AAVGSYVSGWP_ 0 0 0 REV__ENST00000394671.7_1_5:140022620-140023405:+|nuORF REV__ENST00000394671.7_1_5:140022620-140023405:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2672729492188 2 547.269281 1092.52401 NaN NaN NaN NaN NaN NaN NaN 17.805 1 17.81 17.31 18.31 0.0050564 0 0 0 0.93933 1 8998 8998 2.9952 0.41776 1 + 208 26452 141 142 233 233 -0.018551339364194064 AAVLPGKP 8 Unmodified _AAVLPGKP_ 0 0 0 nc|ENSG00000130363|Q86UC2|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3 nc|ENSG00000130363|Q86UC2|RSPH3 nc|ENSG00000130363|Q86UC2|RSPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.7368469238281 2 376.736889 751.459225 -0.26832 -0.00010109 0.089048 3.3548E-05 -0.17927 -6.7539E-05 376.736921494438 45.227 0.23352 45.227 45.055 45.288 0 20 11 2 0 0 0 0.80624 1 24590 24590 2.8892 0 1 9374300 209 16186 142 143 234 234 0.0735533604823786 AAVLRSAAL 9 Unmodified _AAVLRSAAL_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.2716064453125 2 436.271627 870.528701 -0.18018 -7.8606E-05 0.62307 0.00027183 0.4429 0.00019322 436.27184615022423 37.413 0.19138 37.142 37.015 37.206 -0.27133 11 7 2 0 0 0 0.19361 1 19679 19679 23.79 6.6769 1 749800 210 7664 143 144 235 235 0.0882579499698295 AAVPEVAVY 9 Unmodified _AAVPEVAVY_ 0 0 0 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.491943359375 1 918.49311 917.485833 0.33889 0.00031127 0.98032 0.00090042 1.3192 0.0012117 918.4945146052349 54.886 0.23923 54.886 54.765 55.005 0 17 10 2 0 0 0 0.14602 1 30456 30456 28.487 3.813 1 2561000 211 3427 144 145 236 236 0.023789801488987905 AAVPGAMMW 9 Unmodified _AAVPGAMMW_ 0 0 0 REV__ENST00000429893.1_1_20:48446533-48446692:+|nuORF REV__ENST00000429893.1_1_20:48446533-48446692:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2194519042969 2 467.219691 932.42483 -0.0097533 -4.5569E-06 0.74989 0.00035036 0.74013 0.0003458 467.22062095890504 20.635 0.57582 20.635 20.27 20.846 0 121 61 3 0 0 0 0.53666 1 10236 10236 5.2307 5.2307 1 2984200 + 212 26957 145 146 237 237 -0.04408571426540675 AAVPLTWS 8 Unmodified _AAVPLTWS_ 0 0 0 REV__nc|ENSG00000064787|O75363|BCAS1 REV__nc|ENSG00000064787|O75363|BCAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7322692871094 2 422.731803 843.449054 1.5052 0.0006363 1.3979 0.00059095 2.9031 0.0012272 422.7316691371509 96.355 1.0532 90.179 89.569 90.622 -6.1757 101 63 2 0 0 0 0.41521 3 63765 63765;63894;64019 42.968 8.7807 1 17014000 + 213 17362 146 147 238;239;240 238 0.021067283229854183 AAVQAAGN 8 Unmodified _AAVQAAGN_ 0 0 0 ENST00000495828.1_1_1:44804991-44820908:-|nuORF ENST00000495828.1_1_1:44804991-44820908:-|nuORF ENST00000495828.1_1_1:44804991-44820908:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.5144653320312 2 351.182478 700.350402 NaN NaN NaN NaN NaN NaN NaN 15.307 1 15.293 14.793 15.793 -0.014067 0 0 0 0.97444 1 7506 7506 0.79363 0 1 214 14360 147 148 241 241 -0.011758749220575737 AAWDGRRC 8 Unmodified _AAWDGRRC_ 0 0 0 ENST00000485978.1_1_9:136340212-136340591:-|nuORF ENST00000485978.1_1_9:136340212-136340591:-|nuORF ENST00000485978.1_1_9:136340212-136340591:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7192993164062 2 467.719236 933.423919 NaN NaN NaN NaN NaN NaN NaN 13.944 1 13.952 13.452 14.452 0.0073986 0 0 0 0.97444 1 6894 6894 0.69038 0 1 215 14177 148 149 242 242 -0.04545649751219116 AAWEDKDEF 9 Unmodified _AAWEDKDEF_ 0 0 0 ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF ENST00000491113.1_1_20:35234354-35236222:+|nuORF ENST00000491113.1_1_20:35234354-35236222:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7408447265625 2 555.740554 1109.46655 0.42786 0.00023778 0.40295 0.00022394 0.83081 0.00046171 555.740722962982 39.904 0.45034 39.904 39.681 40.131 0 73 22 5 0 0 0 0.029718 2 21452 21350;21452 55.503 35.049 1 99380000 216 1911 149 150 243;244 244 -0.0838002093266823 AAWEDKDEF 9 Unmodified _AAWEDKDEF_ 0 0 0 ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF ENST00000491113.1_1_20:35234354-35236222:+|nuORF ENST00000491113.1_1_20:35234354-35236222:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3093872070312 2 555.740554 1109.46655 0.54988 0.00030559 0.88645 0.00049264 1.4363 0.00079823 555.7404402670142 39.868 0.12702 39.873 39.832 39.959 0.0050583 9 5 2 0 0 0 0.21642 1 21246 21246 3.5965 0.70727 1 766770 217 1911 149 150 245 245 -0.0838002093266823 AAWEDKDEF 9 Unmodified _AAWEDKDEF_ 0 0 0 ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF ENST00000491113.1_1_20:35234354-35236222:+|nuORF ENST00000491113.1_1_20:35234354-35236222:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7410888671875 2 555.740554 1109.46655 0.45883 0.00025499 0.42869 0.00023824 0.88751 0.00049323 555.7407945709899 45.224 0.6027 40.269 39.966 40.569 -4.9549 118 40 4 0 0 0 0.010301 3 27585 27585;27720;27862 79.596 50.515 1 144990000 218 1911 149 150 246;247;248 246 -0.0838002093266823 AAWEEVGDTF 10 Unmodified _AAWEEVGDTF_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7484130859375 2 562.748379 1123.4822 0.27934 0.0001572 -0.16919 -9.521E-05 0.11015 6.1988E-05 562.7481782654561 64.481 0.37297 64.481 64.277 64.65 0 50 18 4 0 0 0 0.2178 2 36001 35894;36001 32.305 20.665 1 11599000 219 6600 150 151 249;250 250 -0.07459734415624553 AAWGEAARK 9 Unmodified _AAWGEAARK_ 0 0 0 REV__ENST00000550376.5_1_12:108154390-108154935:-|nuORF REV__ENST00000550376.5_1_12:108154390-108154935:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7559204101562 2 480.256508 958.498464 0.12549 6.0268E-05 0.15334 7.3643E-05 0.27883 0.00013391 480.2579568696002 38.431 0.12629 38.144 38.048 38.174 -0.28687 7 5 2 0 0 0 0.18882 1 20185 20185 15.847 6.4997 1 782250 + 220 20949 151 152 251 251 0.017554363318026844 AAYGPGRL 8 Unmodified _AAYGPGRL_ 0 0 0 ENST00000337198.9_1_8:103876109-103876346:-|nuORF ENST00000337198.9_1_8:103876109-103876346:-|nuORF ENST00000337198.9_1_8:103876109-103876346:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2112426757812 2 402.72177 803.428987 -0.64023 -0.00025783 -0.52738 -0.00021239 -1.1676 -0.00047022 402.721673395996 28.719 0.26084 28.719 28.6 28.861 0 24 12 3 0 0 0 8.7369 1 14811 14811 2.3027 0 1 5599600 221 11923 152 153 252 252 0.019409773830375343 AAYHHFQR 8 Unmodified _AAYHHFQR_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.254638671875 2 515.2543 1028.49405 -0.21978 -0.00011324 -0.95224 -0.00049065 -1.172 -0.00060389 515.2538129809418 24.574 0.19099 24.574 24.469 24.66 0 17 11 2 0 0 0 0.78849 1 12544 12544 9.3474 0.75416 1 1096700 222 4847 153 154 253 253 -0.01906028091116241 ACAEQQLHQL 10 Unmodified _ACAEQQLHQL_ 0 0 0 REV__ENSG00000153404|ENST00000637938|PLEKHG4B REV__ENSG00000153404|ENST00000637938|PLEKHG4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7769165039062 2 570.776948 1139.53934 0.22119 0.00012625 1.0682 0.00060971 1.2894 0.00073596 570.7775436400875 31.128 0.30452 31.128 31.013 31.318 0 32 14 3 0 0 0 0.52888 1 16188 16188 14.838 0 1 4367000 + 223 21171 154 155 254 254 -0.024845904108815375 ACCFSCNTDYQ 11 Unmodified _ACCFSCNTDYQ_ 0 0 0 REV__SELP|p.R415C|1|0.16|ENSG00000174175|chr1:169609594-169609594|G/A|missense_variant REV__SELP|p.R415C|1|0.16|ENSG00000174175|chr1:169609594-169609594|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.71240234375 2 627.714841 1253.41513 NaN NaN NaN NaN NaN NaN NaN 6.5491 1 6.558 6.058 7.058 0.0089307 0 0 0 0.94313 1 3279 3279 0.26902 0.26902 1 + 224 30099 155 156 255 255 -0.2014417228488128 ACCTFLRE 8 Unmodified _ACCTFLRE_ 0 0 0 ENST00000461084.5_1_3:47324437-47378284:+|nuORF;nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18 ENST00000461084.5_1_3:47324437-47378284:+|nuORF ENST00000461084.5_1_3:47324437-47378284:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.4183959960938 1 942.417184 941.409908 -0.11228 -0.00010581 4.3467 0.0040964 4.2344 0.0039906 942.4213854956625 102.6 0.088997 102.6 102.54 102.63 0 6 3 2 0 0 0 0.80975 1 56579 56579 0.79363 0.10326 1 929200 225 3052 156 157 256 256 -0.0631406329453057 ACEEMRFSRF 10 Unmodified _ACEEMRFSRF_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.1936950683594 3 425.85848 1274.55361 0.36629 0.00015599 0.98196 0.00041818 1.3483 0.00057417 425.8590215062862 51.989 0.21184 51.931 51.835 52.047 -0.058918 23 9 3 0 0 0 0.68074 1 28151 28151 5.0475 1.4605 1 3049700 + 226 19802 157 158 257 257 -0.07268261254262143 ACGFCSLLYAF 11 Unmodified _ACGFCSLLYAF_ 0 0 0 ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7692260742188 2 597.769745 1193.52494 0.57615 0.0003444 -0.11466 -6.854E-05 0.46149 0.00027586 597.7695806381024 83.318 0.31938 82.82 82.642 82.962 -0.49751 30 12 3 0 0 0 0.67922 1 45581 45581 6.2058 0.97511 1 1439900 227 6099 158 159 258 258 -0.0640837888340684 ACHLHNSY 8 Unmodified _ACHLHNSY_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7045593261719 2 472.705794 943.397035 NaN NaN NaN NaN NaN NaN NaN 23.454 1 23.454 22.954 23.954 0 0 0 0 0.97348 1 11955 11955 5.7604 0 1 228 1587 159 160 259 259 -0.07692758362418317 ACKYPKDGTHI 11 Unmodified _ACKYPKDGTHI_ 0 0 0 REV__ENSG00000278129|ENST00000621650|ZNF8 REV__ENSG00000278129|ENST00000621650|ZNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5412292480469 3 411.541257 1231.60194 -0.62494 -0.00025719 0.57296 0.0002358 -0.051972 -2.1389E-05 411.54165167665457 33.791 0.25897 33.791 33.667 33.926 0 32 12 4 0 0 0 0.56638 1 17730 17730 7.0371 0 1 9592800 + 229 24668 160 161 260 260 -0.004594443426867656 ACKYPKDGTHI 11 Unmodified _ACKYPKDGTHI_ 0 0 0 REV__ENSG00000278129|ENST00000621650|ZNF8 REV__ENSG00000278129|ENST00000621650|ZNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.54150390625 3 411.541257 1231.60194 -0.24605 -0.00010126 0.69211 0.00028483 0.44605 0.00018357 411.5416625124642 33.92 0.25314 33.729 33.589 33.843 -0.19131 26 9 4 0 0 0 0.65108 1 17679 17679 4.4062 0 1 5080200 + 230 24668 160 161 261 261 -0.004594443426867656 ACKYPKDGTHI 11 Unmodified _ACKYPKDGTHI_ 0 0 0 REV__ENSG00000278129|ENST00000621650|ZNF8 REV__ENSG00000278129|ENST00000621650|ZNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5411682128906 3 411.541257 1231.60194 -0.10973 -4.516E-05 0.31753 0.00013068 0.20779 8.5516E-05 411.5412063870686 33.622 0.23057 33.651 33.562 33.792 0.028934 15 9 2 0 0 0 0.68427 1 17738 17738 2.6312 0 1 1991500 + 231 24668 160 161 262 262 -0.004594443426867656 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5100708007812 3 390.174574 1167.50189 -0.43596 -0.0001701 2.0325 0.00079305 1.5966 0.00062294 390.1752310027824 24.67 0.19966 24.67 24.624 24.823 0 18 11 2 0 0 0 0.71036 1 12614 12614 1.3296 0 1 570040 + 232 22053 161 162 263 263 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1735534667969 3 390.174574 1167.50189 -0.51079 -0.0001993 -0.077109 -3.0086E-05 -0.5879 -0.00022938 390.1746794752872 25.777 0.291 25.777 25.654 25.945 0 31 13 4 0 0 0 0.71036 1 13204 13204 2.8433 1.6499 1 1976100 + 233 22053 161 162 264 264 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1748962402344 3 390.174574 1167.50189 NaN NaN NaN NaN NaN NaN NaN 24.108 1 24.106 23.606 24.606 -0.0016766 0 0 0 0.93893 1 12312 12312 1.3296 0 1 + 234 22053 161 162 265 265 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1742553710938 3 390.174574 1167.50189 NaN NaN NaN NaN NaN NaN NaN 24.368 1 24.366 23.866 24.866 -0.0016766 0 0 0 0.93893 1 12451 12451 1.3296 0 1 + 235 22053 161 162 266 266 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1748352050781 3 390.174574 1167.50189 NaN NaN NaN NaN NaN NaN NaN 26.31 1 26.278 25.778 26.778 -0.031708 0 0 0 0.86932 1 13526 13526 4.4062 0 1 + 236 22053 161 162 267 267 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1753845214844 3 390.174574 1167.50189 NaN NaN NaN NaN NaN NaN NaN 26.511 1 26.48 25.98 26.98 -0.031708 0 0 0 0.93224 1 13634 13634 2.6312 0 1 + 237 22053 161 162 268 268 -0.07515681676522945 ACLAGSFTDHF 11 Unmodified _ACLAGSFTDHF_ 0 0 0 REV__ENSG00000165810|ENST00000327705|BTNL9 REV__ENSG00000165810|ENST00000327705|BTNL9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 390.174574 1167.50189 -0.51079 -0.0001993 -0.077109 -3.0086E-05 -0.5879 -0.00022938 390.1746794752872 25.777 0.291 25.777 25.654 25.945 0 0 0 NaN 2.8433 31 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1976100 + 238 22053 161 162 -0.07515681676522945 ACQSGSRA 8 Unmodified _ACQSGSRA_ 0 0 0 ENST00000602622.5_1_16:67692335-67692557:-|nuORF ENST00000602622.5_1_16:67692335-67692557:-|nuORF ENST00000602622.5_1_16:67692335-67692557:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1759948730469 2 390.176869 778.339186 NaN NaN NaN NaN NaN NaN NaN 16.511 1 16.511 16.011 17.011 0 0 0 0 0.97444 1 8057 8057 2.0598 0 1 239 15823 162 163 269 269 -0.058850202878488744 ACSFMGTSYW 10 Unmodified _ACSFMGTSYW_ 0 0 0 REV__ENSG00000171217|ENST00000367165|CLDN20 REV__ENSG00000171217|ENST00000367165|CLDN20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7288208007812 2 576.728077 1151.4416 1.0923 0.00062999 -0.077927 -4.4943E-05 1.0144 0.00058504 576.7283742615324 42.667 0.29049 42.667 42.544 42.834 0 35 14 3 0 0 0 0.62068 1 23098 23098 10.074 2.1638 1 6549800 + 240 22543 163 164 270 270 -0.12806115331250112 ACSSSGSQYFR 11 Unmodified _ACSSSGSQYFR_ 0 0 0 ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7579345703125 2 596.756212 1191.49787 NaN NaN NaN NaN NaN NaN NaN 88.557 1 88.053 87.553 88.553 -0.50423 0 0 0 0.94337 1 48432 48432 0 0 1 241 5543 164 165 271 271 -0.09021771170250759 ACYIDYTFISL 11 Unmodified _ACYIDYTFISL_ 0 0 0 REV__ENST00000258662.2_1_13:48620172-48620229:+|nuORF REV__ENST00000258662.2_1_13:48620172-48620229:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8800048828125 3 436.877535 1307.61078 NaN NaN NaN NaN NaN NaN NaN 21.216 1 21.216 20.716 21.716 0 0 0 0 0.9428 1 10720 10720 0.50596 0.051438 1 + 242 24945 165 166 272 272 -0.030725154968877177 ADAEEEQRRL 10 Unmodified _ADAEEEQRRL_ 0 0 0 ENSG00000073969|ENST00000398238|NSF;nc|ENSG00000073969|P46459-2|NSF ENSG00000073969|ENST00000398238|NSF ENSG00000073969|ENST00000398238|NSF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5381774902344 3 406.202069 1215.58438 1.3661 0.00055492 2.1061 0.00085549 3.4722 0.0014104 406.5369439312114 90.688 0.40662 84.512 84.186 84.593 -6.1757 38 23 2 0 0 0 0.67033 1 59901 59901 3.3196 0.88486 1 9877200 243 1118 166 167 273 273 -0.014790683439969143 ADCDACMCQDF 11 Unmodified _ADCDACMCQDF_ 0 0 0 ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP ENSG00000138615|ENST00000261883|CILP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2759399414062 2 611.187602 1220.36065 NaN NaN NaN NaN NaN NaN NaN 86.951 1 86.448 85.948 86.948 -0.50318 0 0 0 0.94301 1 47570 47570 0.35063 0.35063 1 244 5069 167 168 274 274 -0.24071507427970573 ADDDRDDHS 9 Unmodified _ADDDRDDHS_ 0 0 0 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2509765625 2 523.194499 1044.37444 0.40582 0.00021232 -0.82861 -0.00043352 -0.42279 -0.0002212 523.1943062359322 37.638 0.35181 37.638 37.475 37.826 0 83 17 7 0 0 0 0.21564 1 19987 19987 0.40072 0 1 41872000 + 245 19126 168 169 275 275 -0.14596731016990816 ADDEPGAYRF 10 Unmodified _ADDEPGAYRF_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7495727539062 2 570.751453 1139.48835 NaN NaN NaN NaN NaN NaN NaN 50.016 1 50.016 49.516 50.516 0 0 0 0 0.7417 1 27554 27554 14.838 0.93222 1 + 246 17601 169 170 276 276 -0.07581216184098594 ADDFRLKYENE 11 Unmodified _ADDFRLKYENE_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9;ENSG00000204897|ENST00000312150|KRT25;CON__Q7Z3Z0;CON__A2A4G1;CON__P02535-1;CON__Q148H6;ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5 ENSG00000186395|ENST00000269576|KRT10;CON__A2A4G1;CON__P02535-1;CON__Q148H6;ENSG00000167916|ENST00000264651|KRT24 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2212524414062 3 467.221129 1398.64156 -0.20192 -9.4343E-05 0.34021 0.00015895 0.13829 6.4611E-05 467.22130871311066 34.43 0.23397 34.43 34.326 34.56 0 24 11 3 0 0 0 0.25257 1 18123 18123 29.291 23.508 1 5185800 + 247 169;158;135;184;194 170 171 277 277 -0.041816458583070926 ADDFRTKF 8 Unmodified _ADDFRTKF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2337646484375 2 500.248349 998.482145 -0.17869 -8.9391E-05 3.6239 0.0018128 3.4452 0.0017234 500.2499732182251 33.303 0.26749 33.303 33.166 33.434 0 18 13 2 0 0 0 8.7369 1 17392 17392 32.786 13.347 1 2143800 + 248 167;173 171 172 278 278 -0.01715689624938932 ADEDERSRMRE 11 Unmodified _ADEDERSRMRE_ 0 0 0 REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.3096923828125 2 697.309871 1392.60519 -0.34271 -0.00023897 -0.40081 -0.00027949 -0.74352 -0.00051847 697.3095965139655 34.441 1.3149 34.25 33.427 34.742 -0.19131 185 55 5 0 0 0 0.53952 4 17931 17931;18032;18142;18250 14.405 3.6059 1 97401000 + 249 20553 172 173 279;280;281;282 279 -0.07540846026631698 ADEDERSRMRE 11 Unmodified _ADEDERSRMRE_ 0 0 0 REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.3093872070312 2 697.309871 1392.60519 -0.4429 -0.00030884 -0.17223 -0.0001201 -0.61513 -0.00042893 697.3097308944016 35.271 0.70984 35.048 34.623 35.333 -0.2224 126 31 6 0 0 0 0.59689 1 18544 18544 11.495 2.1116 1 192280000 + 250 20553 172 173 283 283 -0.07540846026631698 ADEDERSRMRE 11 Unmodified _ADEDERSRMRE_ 0 0 0 REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.31005859375 2 697.309871 1392.60519 0.27294 0.00019032 -0.41114 -0.00028669 -0.1382 -9.6366E-05 697.3095337652555 34.192 0.66272 34.221 33.859 34.521 0.028934 85 30 4 0 0 0 0.53952 2 17979 17979;18086 14.405 1.4052 1 7038900 + 251 20553 172 173 284;285 284 -0.07540846026631698 ADEDPVKFAPF 11 Unmodified _ADEDPVKFAPF_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.3043212890625 2 618.300778 1234.587 0.74894 0.00046307 3.6737 0.0022715 4.4227 0.0027345 618.3031238728714 82.098 0.23051 81.603 81.443 81.674 -0.4952 12 8 2 0 0 0 0.69316 1 44973 44973 4.897 0.56777 1 375350 + 252 22486 173 174 286 286 -0.020906129390596107 ADESFHFF 8 Unmodified _ADESFHFF_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2143859863281 2 500.213975 998.413397 0.4731 0.00023665 0.6259 0.00031308 1.099 0.00054974 500.214243001241 81.933 0.3205 81.438 81.262 81.582 -0.4952 18 11 2 0 0 0 0.80143 1 44866 44866 5.7604 0 1 511990 253 5688 174 175 287 287 -0.08587353924656327 ADFLSGLVHWG 11 Unmodified _ADFLSGLVHWG_ 0 0 0 ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1 ENST00000453505.6_1_20:48741597-48767785:-|nuORF ENST00000453505.6_1_20:48741597-48767785:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.7916259765625 2 601.303655 1200.59276 1.2479 0.00075038 -0.9191 -0.00055266 0.32883 0.00019773 601.3033859176525 92.183 0.44824 92.214 91.993 92.441 0.030197 49 16 4 0 0 0 0.29817 1 51163 51163 8.1555 0.8663 1 32322000 254 10677 175 176 288 288 0.0004853036330132454 ADFWLMVH 8 Unmodified _ADFWLMVH_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7449340820312 2 509.744388 1017.47422 NaN NaN NaN NaN NaN NaN NaN 90.812 1 90.317 89.817 90.817 -0.49457 0 0 0 0.95201 1 49639 49639 10.183 1.438 1 255 1181 176 177 289 289 -0.03381540146062889 ADFWLMVH 8 Unmodified _ADFWLMVH_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7464599609375 2 509.744388 1017.47422 NaN NaN NaN NaN NaN NaN NaN 91.009 1 90.514 90.014 91.014 -0.49457 0 0 0 0.9706 1 49752 49752 6.3541 0.59368 1 256 1181 176 177 290 290 -0.03381540146062889 ADGALRFV 8 Unmodified _ADGALRFV_ 0 0 0 nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A nc|ENSG00000110002|O00534-4|VWA5A nc|ENSG00000110002|O00534-4|VWA5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.7350158691406 2 424.734877 847.455202 0.59536 0.00025287 -0.30747 -0.00013059 0.28789 0.00012228 424.73447041894485 46.704 0.25317 46.368 46.25 46.503 -0.33664 21 12 2 0 0 0 0.61462 1 25023 25023 24.674 6.5389 1 2177600 257 2689 177 178 291 291 0.02537246554527428 ADGALRFV 8 Unmodified _ADGALRFV_ 0 0 0 nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A nc|ENSG00000110002|O00534-4|VWA5A nc|ENSG00000110002|O00534-4|VWA5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 424.734877 847.455202 1.0347 0.00043949 0.44413 0.00018864 1.4789 0.00062813 424.73520010180374 46.434 0.24282 46.4 46.286 46.529 -0.033417 0.016202 0.00026959 NaN 24.674 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1364500 258 2689 177 178 0.02537246554527428 ADGITEVKYI 10 Unmodified _ADGITEVKYI_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7975463867188 2 554.797872 1107.58119 NaN NaN NaN NaN NaN NaN NaN 70.709 1 70.231 69.731 70.731 -0.47735 0 0 0 0.92825 1 38686 38686 6.7232 0.99131 1 + 259 21114 178 179 292 292 0.031702885492677524 ADGLGFQIRGF 11 Unmodified _ADGLGFQIRGF_ 0 0 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2091979980469 3 394.208495 1179.60366 -0.068669 -2.707E-05 0.074583 2.9401E-05 0.0059132 2.331E-06 394.2085498357068 17.263 0.45142 17.268 17.055 17.507 0.0050564 71 32 3 0 0 0 0.71036 1 8743 8743 1.3296 0.36737 1 2056800 260 677 179 180 293 293 0.021039327375547145 ADGTLSLVHHF 11 Unmodified _ADGTLSLVHHF_ 0 0 0 REV__ENST00000589179.5_1_12:53590293-53590665:-|nuORF REV__ENST00000589179.5_1_12:53590293-53590665:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5396728515625 3 399.540134 1195.59857 0.70491 0.00028164 0.38195 0.0001526 1.0869 0.00043424 399.54018592536386 18.056 0.29469 15.435 15.287 15.582 -2.6215 35 23 3 0 0 0 0.67922 1 9508 9508 5.0475 0 1 3713300 + 261 20421 180 181 294 294 0.008596288749458836 ADHANEAN 8 Unmodified _ADHANEAN_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1751098632812 2 421.175381 840.336209 0.037544 1.5813E-05 -3.2054 -0.00135 -3.1678 -0.0013342 421.17386400392854 63.82 0.24643 63.82 63.659 63.906 0 17 9 2 0 0 0 0.80763 1 35576 35576 2.0598 0 1 815040 262 6514 181 182 295 295 -0.09034572141001718 ADHANEAN 8 Unmodified _ADHANEAN_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 421.175381 840.336209 0.66738 0.00028108 -2.302 -0.00096955 -1.6346 -0.00068846 421.1743905949056 64.247 0.29518 63.762 63.634 63.929 -0.48512 -0.028699 0.00014965 NaN 2.0598 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1986400 263 6514 181 182 -0.09034572141001718 ADHIFIYQEET 11 Unmodified _ADHIFIYQEET_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG;REV__nc|ENSG00000060656|Q92729|PTPRU REV__nc|ENSG00000060656|Q92729|PTPRU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.3174438476562 2 683.319699 1364.62485 -0.41562 -0.000284 -0.30055 -0.00020537 -0.71618 -0.00048938 683.3194570477156 56.698 0.44672 56.213 56.032 56.479 -0.48554 88 24 5 0 0 0 0.61059 1 30722 30722 10.8 0 1 152110000 + 264 29497;20730 182 183 296 296 -0.042881467442384746 ADHLFSDT 8 Unmodified _ADHLFSDT_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2031555175781 2 453.203607 904.392661 0.0047906 2.1711E-06 1.1676 0.00052916 1.1724 0.00053133 453.2043894600468 22.362 0.17902 22.362 22.204 22.383 0 10 8 2 0 0 0 0.63229 1 11343 11343 23.148 5.0134 1 745410 + 265 22318 183 184 297 297 -0.06335944304328223 ADHLGTWEKL 10 Unmodified _ADHLGTWEKL_ 0 0 0 REV__ENSG00000135587|ENST00000258052|SMPD2 REV__ENSG00000135587|ENST00000258052|SMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5369567871094 3 390.536501 1168.58767 -0.41504 -0.00016209 1.4383 0.00056173 1.0233 0.00039964 390.5370946965188 24.378 0.14673 24.378 24.301 24.448 0 11 7 2 0 0 0 0.69377 1 12463 12463 1.7423 0.41263 1 1212500 + 266 20079 184 185 298 298 0.010122265006657472 ADHRFACHVF 10 Unmodified _ADHRFACHVF_ 0 0 0 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 ENSG00000121653|ENST00000241014|MAPK8IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2763061523438 2 601.779825 1201.5451 0.22335 0.00013441 -0.81172 -0.00048848 -0.58838 -0.00035407 601.7802284174329 38.916 0.61082 38.916 38.77 39.381 0 79 28 5 0 0 0 0.69064 1 20930 20930 3.9444 0.3479 1 33565000 267 3591 185 186 299 299 -0.04761447108558059 ADIYSVGLVY 10 Unmodified _ADIYSVGLVY_ 0 0 0 nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C;nc|ENSG00000123612|Q8NER5-2|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C MSMS AL20221201_MKP_PDAC_01 4 550.28564453125 2 550.28714 1098.55973 NaN NaN NaN NaN NaN NaN NaN 21.215 1 18.522 18.022 19.022 -2.693 0 0 0 0.91523 1 11337 11337 7.2892 0.93513 1 268 16166 186 187 300 300 0.01438903520556778 ADKDKTWAVE 10 Unmodified _ADKDKTWAVE_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.337646484375 2 581.790578 1161.5666 0.68261 0.00039713 0.57248 0.00033307 1.2551 0.0007302 581.7904724361094 45.646 0.29946 40.691 40.49 40.789 -4.9549 36 19 2 0 0 0 0.23489 1 28004 28004 8.7454 0 1 21319000 + 269 21279 187 188 301 301 -0.007717835988387378 ADLDGPKI 8 Unmodified _ADLDGPKI_ 0 0 0 REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.4482421875 1 828.44616 827.438883 0.17149 0.00014207 -0.25066 -0.00020766 -0.079172 -6.559E-05 828.4459195094286 72.77 0.31969 72.77 72.585 72.905 0 23 15 2 0 0 0 0.80722 1 40575 40575 2.3027 0 1 1956300 + 270 20071 188 189 302 302 0.0182612059774101 ADLFSVAF 8 Unmodified _ADLFSVAF_ 0 0 0 ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.2243041992188 2 435.223811 868.433069 0.54509 0.00023724 0.079011 3.4388E-05 0.6241 0.00027162 435.2238002204964 49.831 0.38266 49.831 49.671 50.053 0 36 17 3 0 0 0 0.55032 1 27510 27510 30.225 7.0764 1 7830800 271 15230 189 190 303 303 -0.006409779139062266 ADLFSVAF 8 Unmodified _ADLFSVAF_ 0 0 0 ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 869.4398193359375 1 869.440346 868.433069 0.17562 0.00015269 -0.473 -0.00041125 -0.29738 -0.00025856 869.4400874787841 63.443 0.29487 63.443 63.295 63.59 0 27 16 2 0 0 0 0.19792 1 35351 35351 70.716 17.14 1 2790400 272 15230 189 190 304 304 -0.006409779139062266 ADLFSVAF 8 Unmodified _ADLFSVAF_ 0 0 0 ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2237548828125 2 435.223811 868.433069 0.82003 0.0003569 -0.15881 -6.9119E-05 0.66121 0.00028778 435.2237738670141 50.232 0.36118 49.839 49.692 50.053 -0.3923 43 17 3 0 0 0 0.46494 2 27013 27013;27117 38.151 7.4431 1 17534000 273 15230 189 190 305;306 305 -0.006409779139062266 ADLFSVAF 8 Unmodified _ADLFSVAF_ 0 0 0 ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 869.4391479492188 1 869.440346 868.433069 -0.09731 -8.4606E-05 -0.14849 -0.0001291 -0.2458 -0.00021371 869.4404621641299 63.898 0.33652 63.413 63.255 63.592 -0.48512 33 18 2 0 0 0 0.19792 2 34809 34809;34918 70.716 17.14 1 5395500 274 15230 189 190 307;308 307 -0.006409779139062266 ADLFSVAF 8 Unmodified _ADLFSVAF_ 0 0 0 ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF ENST00000555736.1_1_14:65714419-65769374:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2245178222656 2 435.223811 868.433069 1.1166 0.00048597 0.44984 0.00019578 1.5664 0.00068175 435.22378486756 55.625 0.40311 49.704 49.49 49.893 -5.9211 37 23 2 0 0 0 0.37649 2 35366 35366;35498 46.921 8.7697 1 19482000 275 15230 189 190 309;310 309 -0.006409779139062266 ADLHAFTT 8 Unmodified _ADLHAFTT_ 0 0 0 REV__ENSG00000110955|ENST00000262030|ATP5F1B REV__ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2169799804688 2 438.216517 874.418482 0.41916 0.00018368 0.5425 0.00023773 0.96165 0.00042141 438.2165476736982 24.172 0.14767 24.193 24.118 24.265 0.021185 7 5 2 0 0 0 0.48669 1 12488 12488 36.044 11.37 1 2225700 + 276 18731 190 191 311 311 -0.023750500620622006 ADLHAFTT 8 Unmodified _ADLHAFTT_ 0 0 0 REV__ENSG00000110955|ENST00000262030|ATP5F1B REV__ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.216552734375 2 438.216517 874.418482 0.60457 0.00026493 -0.58025 -0.00025427 0.02432 1.0657E-05 438.216192690715 27.325 0.50041 24.288 24.04 24.541 -3.0365 65 24 4 0 0 0 0.40035 1 15146 15146 44.407 12.29 1 204830000 + 277 18731 190 191 312 312 -0.023750500620622006 ADLPSHPK 8 Unmodified _ADLPSHPK_ 0 0 0 ENST00000368409.7_1_1:155041410-155041584:+|nuORF ENST00000368409.7_1_1:155041410-155041584:+|nuORF ENST00000368409.7_1_1:155041410-155041584:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7323303222656 2 432.732335 863.450116 0.1361 5.8893E-05 0.3437 0.00014873 0.47979 0.00020762 432.7325315980635 24.726 0.24243 24.725 24.583 24.826 -0.0016766 15 9 2 0 0 0 0.3408 1 12624 12624 50.855 12.704 1 3242200 278 12268 191 192 313 313 0.012929426918958598 ADLPSHPK 8 Unmodified _ADLPSHPK_ 0 0 0 ENST00000368409.7_1_1:155041410-155041584:+|nuORF ENST00000368409.7_1_1:155041410-155041584:+|nuORF ENST00000368409.7_1_1:155041410-155041584:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 432.732335 863.450116 -0.28635 -0.00012391 0.081739 3.5371E-05 -0.20461 -8.8543E-05 432.7323744892093 24.547 0.33154 24.547 24.386 24.718 0 -0.088979 -8.7324E-05 NaN 50.855 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2013800 279 12268 191 192 0.012929426918958598 ADLQHYSDC 9 Unmodified _ADLQHYSDC_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.1759643554688 2 526.211106 1050.40766 NaN NaN NaN NaN NaN NaN NaN 51.108 1 51.108 50.608 51.608 0 0 0 0 0.76439 1 28206 28206 7.2892 1.5288 1 + 280 19010 192 193 314 314 -0.11552820498650362 ADLRRYINM 9 Unmodified _ADLRRYINM_ 0 0 0 chr17:43941320-43941464|137|243.81|0.02|13.39|-|ENST00000591703|PPY,PPY;ENSG00000108849|ENST00000225992|PPY;chr17:43941654-43942187|82|16.43|0.0|12.16|-|ENST00000591228|PPY,PPY;chr17:43941244-43941464|90|86.82|0.01|13.63|-|ENST00000587006|PPY,PPY;nc|ENSG00000108849|P01298-2|PPY chr17:43941320-43941464|137|243.81|0.02|13.39|-|ENST00000591703|PPY,PPY chr17:43941320-43941464|137|243.81|0.02|13.39|-|ENST00000591703|PPY,PPY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3046264648438 2 576.303133 1150.59171 0.35971 0.0002073 1.9298 0.0011122 2.2895 0.0013195 576.3041959444648 97.682 0.25572 97.682 97.483 97.739 0 14 9 2 0 0 0 0.43463 1 53957 53957 10.824 1.4408 1 439770 281 95 193 194 315 315 0.022439927227196677 ADLSGIFF 8 Unmodified _ADLSGIFF_ 0 0 0 ENST00000261015.4_1_2:203776439-203776619:-|nuORF ENST00000261015.4_1_2:203776439-203776619:-|nuORF ENST00000261015.4_1_2:203776439-203776619:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8827209472656 2 435.223811 868.433069 1.3498 0.00058746 -0.14006 -6.0959E-05 1.2097 0.0005265 435.2232323121781 49.904 0.28357 49.855 49.723 50.006 -0.048824 18 13 2 0 0 0 8.7369 1 26938 26938 5.2307 0 1 1390300 282 11231 194 195 316 316 -0.006409779139062266 ADLTPLLSF 9 Unmodified _ADLTPLLSF_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7714538574219 2 488.771126 975.527698 0.21518 0.00010517 1.1214 0.0005481 1.3366 0.00065328 488.77154370469685 84.784 0.27901 84.784 84.651 84.93 0 19 13 2 0 0 0 0.5029 1 46999 46999 7.2892 2.0586 1 378010 283 6407 195 196 317 317 0.03895535837432362 ADLTRSDWRRV 11 Unmodified _ADLTRSDWRRV_ 0 0 0 REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2472839355469 3 458.912742 1373.7164 1.2149 0.00055754 -2.9472 -0.0013525 -1.7323 -0.00079496 459.24644263011083 21.016 0.31905 18.323 18.134 18.453 -2.693 25 17 2 0 0 0 0.69838 1 11275 11275 4.4062 1.5629 1 4283300 + 284 25894 196 197 318 318 0.044485814635891074 ADLWEIYL 8 Unmodified _ADLWEIYL_ 0 0 0 REV__ENSG00000165449|ENST00000395348|SLC16A9 REV__ENSG00000165449|ENST00000395348|SLC16A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7630004882812 2 511.7633 1021.51205 NaN NaN NaN NaN NaN NaN NaN 69.869 1 69.869 69.369 70.369 0 0 0 0 0.97444 1 38924 38924 2.8892 0 1 + 285 22011 197 198 319 319 0.002152493203539052 ADPDLIVAL 9 Unmodified _ADPDLIVAL_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.8685913085938 1 926.519325 925.512048 0.30153 0.00027937 -1.0418 -0.00096528 -0.74031 -0.00068591 926.5182621737521 77.613 0.25031 77.613 77.544 77.794 0 19 14 2 0 0 0 0.32871 1 43143 43143 15.847 1.0089 1 1008000 + 286 19051 198 199 320 320 0.04631249320379993 ADPGGLSLLF 10 Unmodified _ADPGGLSLLF_ 0 0 0 REV__ENSG00000074276|ENST00000261944|CDHR2 REV__ENSG00000074276|ENST00000261944|CDHR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.5390014648438 1 989.530224 988.522947 0.012944 1.2808E-05 1.809 0.0017901 1.822 0.0018029 989.5314598823766 85.818 0.31711 85.818 85.655 85.972 0 28 13 3 0 0 0 0.71276 1 47570 47570 1.4819 0.68827 1 1104400 + 287 17549 199 200 321 321 0.028226516946801894 ADPPEVVIKF 10 Unmodified _ADPPEVVIKF_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8096923828125 2 557.810782 1113.60701 0.63124 0.00035211 0.63072 0.00035182 1.262 0.00070394 557.8107960406511 91.283 0.37734 90.788 90.586 90.963 -0.49457 40 16 3 0 0 0 0.69377 1 49958 49958 3.5965 1.2938 1 1427200 + 288 18862 200 201 322 322 0.0547518279158794 ADPVLASTNG 10 Unmodified _ADPVLASTNG_ 0 0 0 ENST00000476881.2_1_7:100174203-100174533:-|nuORF ENST00000476881.2_1_7:100174203-100174533:-|nuORF ENST00000476881.2_1_7:100174203-100174533:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7407836914062 2 472.737814 943.461075 0.35714 0.00016883 1.9326 0.0009136 2.2897 0.0010824 472.7402342781292 72.525 0.37864 72.525 72.258 72.637 0 22 14 2 0 0 0 0.67459 1 40320 40320 5.7319 0.50118 1 481280 289 13988 201 202 323 323 -0.012916997244587947 ADQLSSYLS 9 Unmodified _ADQLSSYLS_ 0 0 0 REV__ENSG00000143412|ENST00000368947|ANXA9 REV__ENSG00000143412|ENST00000368947|ANXA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2357177734375 2 492.237647 982.460741 -0.41525 -0.0002044 -2.0468 -0.0010075 -2.4621 -0.0012119 492.23674985149694 26.307 0.17789 26.307 26.208 26.386 0 10 8 2 0 0 0 0.52067 1 13531 13531 6.2058 0 1 609490 + 290 20637 202 203 324 324 -0.03119119444329499 ADQSVRFSF 9 Unmodified _ADQSVRFSF_ 0 0 0 REV__nc|ENSG00000134240|P54868-3|HMGCS2 REV__nc|ENSG00000134240|P54868-3|HMGCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7589721679688 2 528.759081 1055.50361 0.36825 0.00019471 0.07363 3.8932E-05 0.44188 0.00023365 528.7591318038726 31.239 0.56913 31.239 31.071 31.64 0 62 27 4 0 0 0 0.48152 1 16341 16341 8.5933 0 1 27828000 + 291 19963 203 204 325 325 -0.021923045962239485 ADRETWHWNNV 11 Unmodified _ADRETWHWNNV_ 0 0 0 REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 714.8267822265625 2 714.326182 1426.63781 0.4784 0.00034173 -0.69128 -0.0004938 -0.21288 -0.00015207 714.32566363241 47.731 0.35044 47.378 47.145 47.496 -0.3526 36 16 3 0 0 0 0.65108 1 25557 25557 8.7454 0.58988 1 7086100 + 292 18083 204 205 326 326 -0.058442708414986555 ADRETWHWNNV 11 Unmodified _ADRETWHWNNV_ 0 0 0 REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 714.326182 1426.63781 0.4784 0.00034173 -0.69128 -0.0004938 -0.21288 -0.00015207 714.32566363241 47.731 0.35044 47.378 47.145 47.496 -0.3526 0.011874 -0.0017364 NaN 8.7454 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7086100 + 293 18083 204 205 -0.058442708414986555 ADRREEWEHL 10 Unmodified _ADRREEWEHL_ 0 0 0 REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A REV__nc|ENSG00000122299|Q8IWR0-2|ZC3H7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5501403808594 3 447.54958 1339.62691 0.82591 0.00036964 0.34065 0.00015246 1.1666 0.00052209 447.5497725515854 93.66 0.36433 87.484 87.272 87.636 -6.1757 79 21 5 0 0 0 0.67033 1 61916 61916 3.3196 0.68841 1 150720000 + 294 19337 205 206 327 327 -0.029316732157667502 ADSALEDGECF 11 Unmodified _ADSALEDGECF_ 0 0 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF ENST00000487682.5_1_1:156909888-156915005:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1562805175781 3 386.153616 1155.43902 NaN NaN NaN NaN NaN NaN NaN 53.564 1 53.564 53.064 54.064 0 0 0 0 0.93893 1 29699 29699 1.3296 0 1 295 14208 206 207 328 328 -0.1324829225520716 ADSCHNFSF 9 Unmodified _ADSCHNFSF_ 0 0 0 ENST00000370766.7_1_X:134476167-134476350:-|nuORF ENST00000370766.7_1_X:134476167-134476350:-|nuORF ENST00000370766.7_1_X:134476167-134476350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.201171875 2 514.200541 1026.38653 0.36766 0.00018905 1.2183 0.00062646 1.586 0.00081551 514.2011613178139 53.457 0.28703 53.006 52.841 53.128 -0.45173 39 13 4 0 0 0 0.55144 1 28907 28907 4.3292 1.44 1 5945400 296 12342 207 208 329 329 -0.12560785807499997 ADTPTVPPQE 10 Unmodified _ADTPTVPPQE_ 0 0 0 ENSG00000131080|ENST00000374719|EDA2R;nc|ENSG00000131080|Q9HAV5-3|EDA2R;nc|ENSG00000131080|Q9HAV5-2|EDA2R ENSG00000131080|ENST00000374719|EDA2R ENSG00000131080|ENST00000374719|EDA2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.756591796875 2 527.756204 1053.49785 0.34665 0.00018295 0.15845 8.3622E-05 0.5051 0.00026657 527.7561813470159 91.335 0.32037 90.841 90.663 90.984 -0.49457 33 14 3 0 0 0 0.56348 1 49879 49879 13.042 0.80181 1 1256500 297 4296 208 209 330 330 -0.026754478985594687 ADTPTVPPQE 10 Unmodified _ADTPTVPPQE_ 0 0 0 ENSG00000131080|ENST00000374719|EDA2R;nc|ENSG00000131080|Q9HAV5-3|EDA2R;nc|ENSG00000131080|Q9HAV5-2|EDA2R ENSG00000131080|ENST00000374719|EDA2R ENSG00000131080|ENST00000374719|EDA2R MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.756204 1053.49785 0.41939 0.00022134 0.27121 0.00014313 0.6906 0.00036447 527.7565484967118 90.728 0.2861 90.728 90.573 90.859 0 -0.056569 8.8126E-05 NaN 13.042 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 283830 298 4296 208 209 -0.026754478985594687 ADVAQQFQY 9 Unmodified _ADVAQQFQY_ 0 0 0 nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3 nc|ENSG00000126216|Q96CW5-3|TUBGCP3 nc|ENSG00000126216|Q96CW5-3|TUBGCP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7132568359375 2 535.251089 1068.48762 0.25323 0.00013554 1.1935 0.00063881 1.4467 0.00077436 535.2515193341952 64.222 0.52156 64.222 63.906 64.427 0 32 22 3 0 0 0 0.20727 1 35749 35749 7.9102 0 1 1151300 299 3931 209 210 331 331 -0.0438801083312228 ADVAVFRTFL 10 Unmodified _ADVAVFRTFL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MSMS AL20221201_MKP_PDAC_01 4 380.2136840820312 3 380.213358 1137.61824 NaN NaN NaN NaN NaN NaN NaN 109.1 1 102.93 102.43 103.43 -6.1757 0 0 0 0.97592 1 72883 72883 1.5923 0.37745 1 300 4151 210 211 332 332 0.05494004885713366 ADVDPGVPPY 10 Unmodified _ADVDPGVPPY_ 0 0 0 CDH7|p.A724V|1|0.19|ENSG00000081138|chr18:65880707-65880707|C/T|missense_variant CDH7|p.A724V|1|0.19|ENSG00000081138|chr18:65880707-65880707|C/T|missense_variant CDH7|p.A724V|1|0.19|ENSG00000081138|chr18:65880707-65880707|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2483520507812 2 515.248015 1028.48148 0.041791 2.1533E-05 -0.92168 -0.00047489 -0.87989 -0.00045336 515.2475813285995 54.371 0.35846 53.905 53.765 54.124 -0.46664 31 18 2 0 0 0 0.44373 1 29431 29431 19.257 2.3147 1 6994500 301 55 211 212 333 333 -0.03162529064638875 ADVLSRLALWE 11 Unmodified _ADVLSRLALWE_ 0 0 0 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.85107421875 2 636.85097 1271.68739 0.18582 0.00011834 0.23757 0.00015129 0.42338 0.00026963 636.8511018844308 87.451 0.4688 86.947 86.708 87.177 -0.50423 61 20 4 0 0 0 0.44182 2 47857 47763;47857 19.362 6.3195 1 9170700 302 7351 212 213 334;335 335 0.06241044114631222 ADVLSRLALWE 11 Unmodified _ADVLSRLALWE_ 0 0 0 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8512573242188 2 636.85097 1271.68739 -0.21623 -0.0001377 0.079211 5.0446E-05 -0.13702 -8.7259E-05 636.8509608204589 86.917 0.38988 86.975 86.774 87.164 0.058212 43 18 3 0 0 0 0.53952 2 48246 48246;48350 14.405 5.66 1 111060000 303 7351 212 213 336;337 336 0.06241044114631222 ADVWITPFDFW 11 Unmodified _ADVWITPFDFW_ 0 0 0 REV__ENST00000378470.5_2_10:14562876-14563080:-|nuORF REV__ENST00000378470.5_2_10:14562876-14563080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.223876953125 3 466.223923 1395.64994 0.054436 2.5379E-05 -1.6041 -0.00074789 -1.5497 -0.00072251 466.22334518188944 72.428 0.27816 72.47 72.316 72.594 0.041725 30 12 3 0 0 0 0.73114 1 39931 39931 1.3296 0.63198 1 2326600 + 304 26266 213 214 338 338 -0.03206047151002167 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 706.3287963867188 2 706.328816 1410.64308 0.58164 0.00041083 -1.099 -0.00077627 -0.51739 -0.00036544 706.3281317584016 51.217 0.24259 51.217 51.15 51.393 0 14 10 2 0 0 0 0.68427 1 28302 28302 5.7319 2.7366 1 1946200 305 15915 214 215 339 339 -0.045816833032176874 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.3292236328125 2 706.328816 1410.64308 0.52702 0.00037225 -1.1933 -0.00084288 -0.6663 -0.00047063 706.3280119108098 47.556 0.1618 47.203 47.125 47.287 -0.3526 13 7 2 0 0 0 0.63851 1 25521 25521 9.3831 1.7742 1 2282700 306 15915 214 215 340 340 -0.045816833032176874 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.3280029296875 2 706.328816 1410.64308 0.48816 0.0003448 -0.94719 -0.00066903 -0.45903 -0.00032423 706.327870362366 47.851 0.20705 47.498 47.328 47.535 -0.3526 15 9 2 0 0 0 0.54936 1 25621 25621 13.906 5.7505 1 3885300 307 15915 214 215 341 341 -0.045816833032176874 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.3290405273438 2 706.328816 1410.64308 NaN NaN NaN NaN NaN NaN NaN 51.974 1 51.54 51.04 52.04 -0.43367 0 0 0 0.93224 1 28053 28053 5.7319 3.2334 1 308 15915 214 215 342 342 -0.045816833032176874 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 706.328816 1410.64308 0.26641 0.00018818 -0.36329 -0.0002566 -0.096879 -6.8429E-05 706.3285186082974 47.387 0.20428 47.387 47.29 47.494 0 0.091756 0.00066003 NaN 9.3831 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1269700 309 15915 214 215 -0.045816833032176874 ADVWWYCWGLL 11 Unmodified _ADVWWYCWGLL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|88|3|sense MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 706.328816 1410.64308 0.16979 0.00011993 -0.26322 -0.00018592 -0.093424 -6.5988E-05 706.3281303444342 51.919 0.093685 51.485 51.418 51.512 -0.43367 0.13392 0.0009135 NaN 5.7319 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1260200 310 15915 214 215 -0.045816833032176874 ADYALLEDCPH 11 Unmodified _ADYALLEDCPH_ 0 0 0 ENSG00000182670|ENST00000418766|TTC3;ENST00000479930.5_1_21:38459548-38463712:+|nuORF ENSG00000182670|ENST00000418766|TTC3 ENSG00000182670|ENST00000418766|TTC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.7744140625 2 623.774071 1245.53359 1.0388 0.00064799 -0.28349 -0.00017683 0.75534 0.00047116 623.7740486355706 102.69 0.092033 96.512 96.459 96.551 -6.1757 31 19 2 0 0 0 0.56638 1 68895 68895 13.042 2.2185 1 7861600 311 9076 215 216 343 343 -0.0793573371322509 AEAERLDQEEA 11 Unmodified _AEAERLDQEEA_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000589493.1_1_17:40967924-40970674:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7919921875 2 630.788763 1259.56297 0.78435 0.00049476 3.1404 0.0019809 3.9248 0.0024757 630.790641480208 54.3 0.17849 54.3 54.173 54.352 0 12 7 2 0 0 0 0.66428 1 30162 30162 7.609 1.4032 1 1165100 312 3958 216 217 344 344 -0.056424981633426796 AEAILLSYL 9 Unmodified _AEAILLSYL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 496.7870178222656 2 496.786776 991.558998 NaN NaN NaN NaN NaN NaN NaN 89.382 1 83.207 82.707 83.707 -6.1757 0 0 0 0.050352 1 59001 59001 57.471 6.6163 1 + 313 21279;29718 217 218 345 345 0.062881088715244 AEALKWHSDG 10 Unmodified _AEALKWHSDG_ 0 0 0 REV__ENST00000494567.1_1_15:99759074-99762030:-|nuORF REV__ENST00000494567.1_1_15:99759074-99762030:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2676391601562 2 557.269813 1112.52507 NaN NaN NaN NaN NaN NaN NaN 19.088 1 19.112 18.612 19.612 0.023106 0 0 0 0.71157 1 9609 9609 16.149 0 1 + 314 27938 218 219 346 346 -0.026689195675317023 AEALPSLAA 9 Unmodified _AEALPSLAA_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.73486328125 2 421.734543 841.454533 -0.14908 -6.2873E-05 0.48325 0.0002038 0.33417 0.00014093 421.734853853426 51.821 0.31106 51.821 51.665 51.976 0 23 13 2 0 0 0 0.07916 1 28636 28636 37.974 7.3375 1 3728200 315 8844 219 220 347 347 0.027464071148074254 AEAPLAGDP 9 Unmodified _AEAPLAGDP_ 0 0 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.4097900390625 1 840.409774 839.402498 0.41733 0.00035073 0.94579 0.00079485 1.3631 0.0011456 840.410746865168 36.72 0.20783 36.72 36.61 36.818 0 14 9 2 0 0 0 0.095405 1 19485 19485 34.102 3.8776 1 1102700 316 3974 220 221 348 348 -0.02362756298941804 AEAPTALSF 9 Unmodified _AEAPTALSF_ 0 0 0 ENST00000405675.7_2_22:38692569-38692725:-|nuORF ENST00000405675.7_2_22:38692569-38692725:-|nuORF ENST00000405675.7_2_22:38692569-38692725:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7320861816406 2 453.732 905.449448 0.24897 0.00011296 -0.40425 -0.00018342 -0.15528 -7.0457E-05 453.73178125541097 43.633 0.40197 43.633 43.418 43.82 0 60 19 4 0 0 0 0.070838 1 23741 23741 39.957 1.8061 1 319250000 317 12925 221 222 349 349 -0.007058967478087652 AEASASDRCL 10 Unmodified _AEASASDRCL_ 0 0 0 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7339477539062 2 511.732206 1021.44986 0.25523 0.00013061 2.9419 0.0015055 3.1972 0.0016361 511.73345725515884 61.632 0.34522 61.632 61.497 61.842 0 23 15 2 0 0 0 0.50944 1 34357 34357 15.847 1.2655 1 976610 318 4173 222 223 350 350 -0.06000845090261464 AEASNLLFD 9 Unmodified _AEASNLLFD_ 0 0 0 ENSG00000164684|ENST00000327835|ZNF704 ENSG00000164684|ENST00000327835|ZNF704 ENSG00000164684|ENST00000327835|ZNF704 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.4711303710938 1 979.473103 978.465826 0.30037 0.0002942 0.028546 2.796E-05 0.32892 0.00032216 979.4732451467135 66.583 0.18832 66.583 66.491 66.679 0 12 8 2 0 0 0 0.30562 1 37130 37130 16.942 0 1 999840 319 7227 223 224 351 351 -0.024268155817026127 AEASPGGCLPA 11 Unmodified _AEASPGGCLPA_ 0 0 0 REV__ENSG00000149922|ENST00000395224|TBX6 REV__ENSG00000149922|ENST00000395224|TBX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7247009277344 2 486.726392 971.438231 -0.60218 -0.0002931 -1.6285 -0.00079265 -2.2307 -0.0010857 486.7253324996563 28.212 0.25604 28.212 28.074 28.33 0 38 12 4 0 0 0 0.46578 1 14529 14529 18.146 1.2041 1 9949900 + 320 21015 224 225 352 352 -0.04863042113584015 AEASPQPEK 9 Unmodified _AEASPQPEK_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.73876953125 2 478.737814 955.461075 0.41181 0.00019715 1.6263 0.00077857 2.0381 0.00097572 478.73859917986306 51.625 0.50028 51.625 51.302 51.802 0 46 22 3 0 0 0 0.32235 1 28591 28591 16.149 0 1 16957000 + 321 19635 225 226 353 353 -0.018436997244634767 AEASTEPFL 9 Unmodified _AEASTEPFL_ 0 0 0 REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3 REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4620971679688 1 964.462204 963.454927 0.6382 0.00061552 -0.34179 -0.00032964 0.29642 0.00028588 964.4620141619555 46.422 0.25037 46.422 46.294 46.544 0 19 11 2 0 0 0 0.32871 1 25338 25338 15.847 0 1 2076500 + 322 22356 226 227 354 354 -0.028262179559988 AECEEIPG 8 Unmodified _AECEEIPG_ 0 0 0 nc|ENSG00000064300|P08138-2|NGFR;ENSG00000064300|ENST00000172229|NGFR nc|ENSG00000064300|P08138-2|NGFR nc|ENSG00000064300|P08138-2|NGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.3516235351562 1 847.35021 846.342934 1.0395 0.00088083 -0.42463 -0.00035981 0.61488 0.00052102 847.3503096056278 55.264 0.45994 49.343 49.113 49.573 -5.9211 62 28 3 0 0 0 0.31612 1 35316 35316 53.576 9.1686 1 50299000 323 872 227 228 355 355 -0.08638395304637925 AECKRCRTRRR 11 Unmodified _AECKRCRTRRR_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.9276733398438 3 478.926222 1433.75684 0.035319 1.6915E-05 0.55387 0.00026526 0.58919 0.00028218 478.92660345004185 35.011 0.10918 35.038 34.973 35.082 0.027401 6 4 2 0 0 0 0.74429 1 18496 18496 0.094841 0 1 1105400 + 324 17830;29521 228 229 356 356 0.05730901310698755 AEDEGEEEEF 10 Unmodified _AEDEGEEEEF_ 0 0 0 REV__ENSG00000137285|ENST00000259818|TUBB2B REV__ENSG00000137285|ENST00000259818|TUBB2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2162475585938 2 592.217305 1182.42006 NaN NaN NaN NaN NaN NaN NaN 64.677 1 64.677 64.177 65.177 0 0 0 0 0.96981 1 36072 36072 3.9444 1.8846 1 + 325 20230 229 230 357 357 -0.16385550345262345 AEDEKKTLNTL 11 Unmodified _AEDEKKTLNTL_ 0 0 0 ENSG00000151746|ENST00000652176|BICD1;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1 ENSG00000151746|ENST00000652176|BICD1 ENSG00000151746|ENST00000652176|BICD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2265014648438 3 421.225992 1260.65615 -0.48314 -0.00020351 0.061011 2.5699E-05 -0.42212 -0.00017781 421.2261263973448 33.43 0.24459 33.43 33.285 33.53 0 41 19 3 0 0 0 0.62014 1 17511 17511 10.315 0 1 27093000 326 6144 230 231 358 358 0.036244262898890156 AEDESCPEDW 10 Unmodified _AEDESCPEDW_ 0 0 0 nc|ENSG00000136710|Q96NT0-2|CCDC115 nc|ENSG00000136710|Q96NT0-2|CCDC115 nc|ENSG00000136710|Q96NT0-2|CCDC115 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7100219726562 2 590.708593 1179.40263 0.6303 0.00037232 1.3341 0.00078807 1.9644 0.0011604 590.7095409733729 47.745 0.33628 47.745 47.579 47.916 0 62 15 6 0 0 0 0.66569 2 26116 26116;26226 6.7232 4.8789 1 19885000 327 16216 231 232 359;360 359 -0.17989169151906026 AEDHHYCY 8 Unmodified _AEDHHYCY_ 0 0 0 REV__ENSG00000236699|ENST00000420470|ARHGEF38 REV__ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2789306640625 2 519.192716 1036.37088 1.0579 0.00054927 0.61684 0.00032026 1.6748 0.00086953 519.1929190985218 70.586 0.5287 64.411 64.118 64.646 -6.1757 48 28 2 0 0 0 8.7369 1 45993 45993 0.69038 0.69038 1 60307000 + 328 24426 232 233 361 361 -0.14585072324530302 AEDSNLPSAAY 11 Unmodified _AEDSNLPSAAY_ 0 0 0 ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF ENST00000445359.1_1_9:38643041-38643254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2604370117188 2 569.256568 1136.49858 0.044354 2.5249E-05 2.7864 0.0015862 2.8308 0.0016114 569.258611542577 51.567 0.22108 51.146 51.038 51.259 -0.42163 20 11 3 0 0 0 0.65108 1 27810 27810 8.7454 0.15213 1 3155900 329 13456 233 234 362 362 -0.06420653249506358 AEDVSLLVSF 10 Unmodified _AEDVSLLVSF_ 0 0 0 REV__ENSG00000145214|ENST00000273814|DGKQ REV__ENSG00000145214|ENST00000273814|DGKQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.288818359375 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 72.835 1 72.359 71.859 72.859 -0.47588 0 0 0 0.28434 1 39859 39859 37.974 5.6685 1 + 330 20759 234 235 363 363 0.01850599657973362 AEEEDPDGE 9 Unmodified _AEEEDPDGE_ 0 0 0 ENSG00000178860|ENST00000325509|MSC ENSG00000178860|ENST00000325509|MSC ENSG00000178860|ENST00000325509|MSC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.6823120117188 2 495.680359 989.346164 0.75806 0.00037575 2.8788 0.001427 3.6369 0.0018027 495.6814831018113 47.355 0.16339 47.002 46.879 47.042 -0.3526 11 7 2 0 0 0 0.21819 1 25397 25397 2.0598 0.21551 1 2712500 331 8778 235 236 364 364 -0.1489347371692702 AEEEKTYL 8 Unmodified _AEEEKTYL_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7842407226562 2 491.740022 981.465492 NaN NaN NaN NaN NaN NaN NaN 86.957 1 86.454 85.954 86.954 -0.50318 0 0 0 0.97444 1 47573 47573 2.3027 0.4585 1 + 332 24192 236 237 365 365 -0.02598235301582008 AEEKAHAF 8 Unmodified _AEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7238159179688 2 451.721967 901.429381 NaN NaN NaN NaN NaN NaN NaN 15.93 1 15.93 15.43 16.43 0 0 0 0 0.93587 1 7720 7720 13.508 3.3245 1 333 16412 237 238 366 366 -0.025276476877706955 AEEKFIEF 8 Unmodified _AEEKFIEF_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3 nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7555541992188 2 506.752933 1011.49131 NaN NaN NaN NaN NaN NaN NaN 73.531 1 73.531 73.031 74.031 0 0 0 0 0.97444 1 40938 40938 2.8892 0 1 334 384 238 239 367 367 -0.01397341059282553 AEELDPSDV 9 Unmodified _AEELDPSDV_ 0 0 0 REV__CON__P01045-1 REV__CON__P01045-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7205505371094 2 487.719287 973.424021 1.1559 0.00056375 1.3524 0.00065961 2.5083 0.0012234 487.7199929053774 20.666 0.36699 17.973 17.781 18.148 -2.693 50 23 3 0 0 0 0.14602 1 11073 11073 28.487 1.6032 1 5964900 + + 335 16836 239 240 368 368 -0.06375416060893713 AEELKELIF 9 Unmodified _AEELKELIF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3016967773438 2 546.30279 1090.59103 0.20343 0.00011114 -0.35442 -0.00019362 -0.15099 -8.2486E-05 546.3027446962496 76.743 0.83559 70.567 70.316 71.152 -6.1757 68 45 2 0 0 0 0.07087 1 50517 50517 39.95 1.7741 1 20773000 + 336 17502 240 241 369 369 0.04935476554669549 AEESVCEP 8 Unmodified _AEESVCEP_ 0 0 0 REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1 REV__nc|ENSG00000136643|Q96S38-2|RPS6KC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 865.34814453125 1 863.345125 862.337848 0.53697 0.00046359 -0.40126 -0.00034642 0.13571 0.00011716 863.3450846817244 38.26 0.37443 33.891 33.718 34.092 -4.3689 41 22 3 0 0 0 0.78849 1 22594 22594 9.3474 0 1 11271000 + 337 20171 241 242 370 370 -0.09882699167258124 AEETLEAL 8 Unmodified _AEETLEAL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MSMS AL20221201_MKP_PDAC_01 4 438.2232360839844 2 438.221465 874.428378 NaN NaN NaN NaN NaN NaN NaN 19.358 1 16.702 16.202 17.202 -2.6564 0 0 0 0.59893 1 10245 10245 34.187 0 1 338 5948 242 243 371 371 -0.013859068473266234 AEFDFRTY 8 Unmodified _AEFDFRTY_ 0 0 0 CON__P07224;ENSG00000184500|ENST00000394236|PROS1 CON__P07224 CON__P07224 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.6929931640625 2 524.740357 1047.46616 0.43007 0.00022568 -4.0026 -0.0021004 -3.5726 -0.0018747 525.2398541627085 37.368 0.075481 37.368 37.333 37.409 0 5 3 2 0 0 0 8.7369 1 19866 19866 9.3474 1.4373 1 875710 + 339 166 243 244 372 372 -0.055673958618626784 AEFGNYPK 8 Unmodified _AEFGNYPK_ 0 0 0 ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4454956054688 1 925.441409 924.434132 0.41116 0.0003805 2.5981 0.0024044 3.0093 0.0027849 925.4440211349199 58.164 0.27982 58.164 58.036 58.316 0 13 10 2 0 0 0 0.79669 1 32359 32359 8.5933 2.8329 1 885000 340 7971 244 245 373 373 -0.031107635449984627 AEFKSMEI 8 Unmodified _AEFKSMEI_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7309265136719 2 477.733686 953.452819 -0.58784 -0.00028083 -4.4325 -0.0021175 -5.0203 -0.0023984 477.7315116090702 55.561 0.20264 55.561 55.389 55.592 0 14 8 3 0 0 0 0.66338 1 30855 30855 20.454 1.1966 1 1350400 + 341 21988 245 246 374 374 -0.02576969965457465 AEFSGSLPAF 10 Unmodified _AEFSGSLPAF_ 0 0 0 REV__ENSG00000100982|ENST00000372409|PCIF1 REV__ENSG00000100982|ENST00000372409|PCIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2495727539062 2 513.250557 1024.48656 0.24355 0.000125 -1.4901 -0.00076478 -1.2465 -0.00063978 513.2497811979782 81.684 0.32616 81.684 81.515 81.841 0 32 17 2 0 0 0 0.31022 1 45369 45369 26.884 6.43 1 976640 + 342 18120 246 247 375 375 -0.024702252020460946 AEFSPEDSPSV 11 Unmodified _AEFSPEDSPSV_ 0 0 0 ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8398742675781 3 388.840026 1163.49825 -0.64059 -0.00024909 1.4227 0.0005532 0.78212 0.00030412 388.8405015648114 34.536 0.32949 34.536 34.345 34.675 0 46 16 4 0 0 0 0.65108 1 18159 18159 4.4062 0 1 12672000 343 6398 247 248 376 376 -0.07696072969383749 AEFTEEDFYWN 11 Unmodified _AEFTEEDFYWN_ 0 0 0 REV__ENSG00000101306|ENST00000375985|MYLK2 REV__ENSG00000101306|ENST00000375985|MYLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 726.2962036132812 2 725.793514 1449.57248 0.28673 0.00020811 0.16494 0.00011971 0.45167 0.00032782 725.7938957389026 53.66 0.31391 53.66 53.506 53.82 0 72 14 7 0 0 0 0.73992 1 29712 29712 0 0 1 30031000 + 344 18157 248 249 377 377 -0.13432729877831662 AEFYFWHEQY 10 Unmodified _AEFYFWHEQY_ 0 0 0 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8727111816406 3 473.87166 1418.59315 NaN NaN NaN NaN NaN NaN NaN 25.866 1 25.866 25.366 26.366 0 0 0 0 0.98914 1 13275 13275 0.77653 0 1 + 345 21176 249 250 378 378 -0.09940094707530989 AEGAELYPV 9 Unmodified _AEGAELYPV_ 0 0 0 REV__ENST00000592297.2_1_19:1083019-1086002:+|nuORF REV__ENST00000592297.2_1_19:1083019-1086002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.4679565429688 1 948.467289 947.460012 -0.56695 -0.00053774 1.0091 0.00095713 0.44218 0.0004194 948.4683669150484 70.249 0.24878 70.249 70.153 70.402 0 14 10 2 0 0 0 0.49272 1 39128 39128 7.9102 0 1 574640 + 346 23152 250 251 379 379 -0.015819140933786002 AEGARLLQAAF 11 Unmodified _AEGARLLQAAF_ 0 0 0 ENSG00000261308|ENST00000618634|FIGNL2 ENSG00000261308|ENST00000618634|FIGNL2 ENSG00000261308|ENST00000618634|FIGNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8203735351562 2 573.81693 1145.61931 3.1997 0.001836 0.34037 0.00019531 3.5401 0.0020314 573.817173239009 99.687 0.39846 99.651 99.324 99.723 -0.036301 36 14 4 0 0 0 0.26767 1 55355 55355 28.495 2.2264 1 63623000 347 10839 251 252 380 380 0.052322192545943835 AEGIEYLRVI 10 Unmodified _AEGIEYLRVI_ 0 0 0 nc|ENSG00000132359|Q684P5-3|RAP1GAP2;nc|ENSG00000132359|Q684P5-2|RAP1GAP2;ENSG00000132359|ENST00000254695|RAP1GAP2 nc|ENSG00000132359|Q684P5-3|RAP1GAP2 nc|ENSG00000132359|Q684P5-3|RAP1GAP2 MSMS AL20221201_MKP_PDAC_01 4 387.8868713378906 3 388.220401 1161.63937 NaN NaN NaN NaN NaN NaN NaN 46.484 1 41.403 40.903 41.903 -5.0805 0 0 0 0.76313 1 28721 28721 8.4443 0 1 348 4398 252 253 381 381 0.06501970194563 AEGIPFEETLL 11 Unmodified _AEGIPFEETLL_ 0 0 0 REV__ENSG00000189139|ENST00000340446|FSCB REV__ENSG00000189139|ENST00000340446|FSCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8789367675781 3 406.879933 1217.61797 -0.18358 -7.4696E-05 -1.7885 -0.0007277 -1.9721 -0.0008024 406.87922403791606 14.465 0.19045 14.472 14.342 14.532 0.0073986 12 7 2 0 0 0 0.71728 1 7151 7151 2.6312 0.37851 1 1413600 + 349 23766 253 254 382 382 0.017865403752011844 AEGIPFEETLL 11 Unmodified _AEGIPFEETLL_ 0 0 0 REV__ENSG00000189139|ENST00000340446|FSCB REV__ENSG00000189139|ENST00000340446|FSCB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 406.879933 1217.61797 -0.6646 -0.00027041 -1.5282 -0.00062178 -2.1928 -0.0008922 406.8791966334539 14.514 0.13595 14.514 14.435 14.571 0 0.019349 -6.5486E-05 NaN 2.6312 84 36 4 NaN NaN NaN NaN 0 NaN NaN 0 3893100 + 350 23766 253 254 0.017865403752011844 AEGLFDVRQ 9 Unmodified _AEGLFDVRQ_ 0 0 0 REV__ENSG00000142627|ENST00000358432|EPHA2 REV__ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7666015625 2 517.766906 1033.51926 -0.33546 -0.00017369 0.41396 0.00021433 0.078499 4.0644E-05 517.7672417393541 26.75 0.20984 26.75 26.658 26.868 0 15 9 2 0 0 0 0.19127 1 13762 13762 24.021 4.5816 1 1205800 + 351 20584 254 255 383 383 0.0038398192079966975 AEGLREVTL 9 Unmodified _AEGLREVTL_ 0 0 0 REV__nc|ENSG00000167614|Q9H313-5|TTYH1 REV__nc|ENSG00000167614|Q9H313-5|TTYH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2765502929688 2 494.277106 986.53966 -0.16829 -8.3181E-05 0.097779 4.833E-05 -0.070509 -3.4851E-05 494.2771975536945 40.549 0.14941 40.549 40.471 40.62 0 12 7 2 0 0 0 0.10247 1 21815 21815 32.786 0.4802 1 3460700 + 352 29765 255 256 384 384 0.04585152580614249 AEGLTLPQFL 10 Unmodified _AEGLTLPQFL_ 0 0 0 nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3 nc|ENSG00000145451|O75311-2|GLRA3 nc|ENSG00000145451|O75311-2|GLRA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2659912109375 2 544.802957 1087.59136 0.12009 6.5426E-05 2.1683 0.0011813 2.2884 0.0012467 544.8043205190921 61.834 0.28818 61.834 61.663 61.951 0 27 12 3 0 0 0 0.22811 1 34450 34450 10.074 0 1 4668300 353 5699 256 257 385 385 0.05106896274514838 AEGPGYLV 8 Unmodified _AEGPGYLV_ 0 0 0 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 ENSG00000188981|ENST00000438480|MSANTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.4075317382812 1 805.409046 804.401769 -0.00011939 -9.6156E-08 0.72319 0.00058246 0.72307 0.00058237 805.4090649957988 63.167 0.24195 63.167 63.053 63.295 0 11 9 2 0 0 0 0.78849 1 35246 35246 9.3474 0 1 424280 354 9711 257 258 386 386 -0.008255509479909051 AEGRSAWSVL 10 Unmodified _AEGRSAWSVL_ 0 0 0 REV__ENSG00000064601|ENST00000646241|CTSA REV__ENSG00000064601|ENST00000646241|CTSA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2408447265625 2 538.28018 1074.54581 0.27291 0.0001469 2.7342 0.0014718 3.0072 0.0016187 538.2811343236139 63.751 0.4108 63.265 62.948 63.359 -0.48617 29 18 2 0 0 0 0.21952 1 34633 34633 10.824 2.9138 1 2360200 + 355 17357 258 259 387 387 0.011516708121462216 AEGSRCLQT 9 Unmodified _AEGSRCLQT_ 0 0 0 ENST00000360900.10_3_16:86588332-86588800:-|nuORF ENST00000360900.10_3_16:86588332-86588800:-|nuORF ENST00000360900.10_3_16:86588332-86588800:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.7281188964844 2 482.729466 963.444379 NaN NaN NaN NaN NaN NaN NaN 19.132 1 16.476 15.976 16.976 -2.6564 0 0 0 0.76439 1 10112 10112 7.2892 0.56607 1 356 12174 259 260 388 388 -0.038805238820714294 AEHKTTYEGL 10 Unmodified _AEHKTTYEGL_ 0 0 0 ENSG00000157470|ENST00000288228|FAM81A ENSG00000157470|ENST00000288228|FAM81A ENSG00000157470|ENST00000288228|FAM81A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.8142700195312 2 574.782753 1147.55095 0.23537 0.00013529 -3.2774 -0.0018838 -3.042 -0.0017485 574.7810793795434 23.567 0.33192 20.739 20.523 20.855 -2.8273 40 19 3 0 0 0 0.23325 1 12750 12750 10.074 1.9184 1 4913600 357 6522 260 261 389 389 -0.016920701159278906 AEIAKDYRV 9 Unmodified _AEIAKDYRV_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7678833007812 2 532.790381 1063.56621 0.67133 0.00035768 0.060178 3.2062E-05 0.73151 0.00038974 532.7902751579625 60.601 0.38709 60.601 60.451 60.838 0 33 16 3 0 0 0 0.16785 1 33844 33844 16.942 6.1184 1 2035600 358 4094 261 262 390 390 0.036968414719467546 AEICSDYM 8 Unmodified _AEICSDYM_ 0 0 0 nc|ENSG00000145428|Q8N4F7-2|RNF175;ENST00000503694.5_1_4:154636517-154669813:-|nuORF;ENSG00000145428|ENST00000347063|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 nc|ENSG00000145428|Q8N4F7-2|RNF175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.1807250976562 2 466.180429 930.346305 0.50263 0.00023431 0.36752 0.00017133 0.87015 0.00040565 466.18087697812337 39.881 0.28972 39.881 39.72 40.01 0 30 14 3 0 0 0 0.74163 1 21374 21374 13.508 3.3245 1 2912700 359 5697 262 263 391 391 -0.12165468522289302 AEIDEPNAF 9 Unmodified _AEIDEPNAF_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7585144042969 2 503.229822 1004.44509 0.10797 5.4331E-05 1.3427 0.0006757 1.4507 0.00073003 503.2300471627671 41.788 0.35142 41.788 41.589 41.94 0 25 17 2 0 0 0 0.18118 1 22666 22666 12.532 0 1 6214000 360 5176 263 264 392 392 -0.056954059613758545 AEIFEIGLHK 10 Unmodified _AEIFEIGLHK_ 0 0 0 REV__nc|ENSG00000157168|Q02297-2|NRG1 REV__nc|ENSG00000157168|Q02297-2|NRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2189331054688 3 386.21688 1155.62881 0.24345 9.4026E-05 2.4243 0.00093631 2.6678 0.0010303 386.2178882644004 51.981 0.23439 51.923 51.792 52.027 -0.058918 19 10 2 0 0 0 0.69848 1 28186 28186 3.0723 0.98626 1 4070100 + 361 29725 264 265 393 393 0.05721987540118789 AEIKHKYLW 9 Unmodified _AEIKHKYLW_ 0 0 0 ENSG00000103811|ENST00000220166|CTSH;ENST00000534038.5_1_15:79224365-79237386:-|nuORF;ENST00000528191.5_1_15:79224365-79229419:-|nuORF;ENST00000533777.5_1_15:79224365-79230096:-|nuORF ENSG00000103811|ENST00000220166|CTSH ENSG00000103811|ENST00000220166|CTSH MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.558349609375 3 396.557236 1186.64988 1.3324 0.00052839 3.4157 0.0013545 4.7481 0.0018829 396.55849828480274 20.869 0.30131 18.176 18.019 18.321 -2.693 24 17 2 0 0 0 0.55144 1 11153 11153 2.4985 0 1 3121700 362 2162 265 266 394 394 0.06401997639659385 AEIQNAEDY 9 Unmodified _AEIQNAEDY_ 0 0 0 ENSG00000140854|ENST00000379661|KATNB1;KATNB1|p.E384K|1|0.25|ENSG00000140854|chr16:57753492-57753492|G/A|missense_variant;ENST00000566611.5_1_16:57786940-57790081:+|nuORF ENSG00000140854|ENST00000379661|KATNB1 ENSG00000140854|ENST00000379661|KATNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7308349609375 2 526.730186 1051.44582 0.26067 0.0001373 0.50062 0.00026369 0.76129 0.00040099 526.730682237226 70.274 0.22239 70.274 70.203 70.425 0 14 8 2 0 0 0 0.34999 1 39176 39176 14.838 4.6549 1 762000 363 5276 266 267 395 395 -0.07784611312331435 AEISRLGFR 9 Unmodified _AEISRLGFR_ 0 0 0 REV__ENST00000267750.8_1_15:34517227-34517341:+|nuORF REV__ENST00000267750.8_1_15:34517227-34517341:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.7463989257812 2 524.79854 1047.58253 0.60234 0.0003161 -0.10364 -5.4392E-05 0.49869 0.00026171 524.7985463021018 17.852 0.20189 15.265 15.161 15.362 -2.5866 30 17 2 0 0 0 0.20358 1 9363 9363 10.074 2.1638 1 3207500 + 364 25112 267 268 396 396 0.06063967428713113 AEISRSSISL 10 Unmodified _AEISRSSISL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.793701171875 2 531.793121 1061.57169 NaN NaN NaN NaN NaN NaN NaN 45.139 1 44.815 44.315 45.315 -0.32425 0 0 0 0.48706 1 24098 24098 26.884 6.0124 1 365 9690 268 269 397 397 0.04336520263791499 AEKFRHAL 8 Unmodified _AEKFRHAL_ 0 0 0 ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF ENSG00000144230|ENST00000486700|GPR17 ENSG00000144230|ENST00000486700|GPR17 MSMS AL20221201_MKP_PDAC_01 4 486.274169921875 2 486.274701 970.534849 NaN NaN NaN NaN NaN NaN NaN 38.744 1 34.293 33.793 34.793 -4.4509 0 0 0 0.57076 1 22904 22904 36.044 6.9626 1 366 5593 269 270 398 398 0.048403132284988715 AEKKAKRLRK 10 Unmodified _AEKKAKRLRK_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.9370727539062 3 409.938451 1226.79352 NaN NaN NaN NaN NaN NaN NaN 15.741 1 15.741 15.241 16.241 0 0 0 0 1.0047 1 7611 7611 0.15932 0.01943 1 + 367 18966 270 271 399 399 0.18919844470588032 AEKPLEGP 8 Unmodified _AEKPLEGP_ 0 0 0 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.4461059570312 1 840.44616 839.438883 0.51737 0.00043482 -0.49639 -0.00041719 0.020982 1.7635E-05 840.4457665484722 54.082 0.41007 54.082 53.899 54.309 0 55 18 4 0 0 0 0.10045 1 30056 30056 99.799 10.895 1 45378000 + 368 21012 271 272 400 400 0.01274120597770434 AEKPLEGP 8 Unmodified _AEKPLEGP_ 0 0 0 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 840.4464111328125 1 840.44616 839.438883 -0.42851 -0.00036014 0.28109 0.00023624 -0.14742 -0.0001239 840.4465958477033 54.726 0.2568 54.26 54.124 54.381 -0.46664 20 12 2 0 0 0 0.31379 1 29638 29638 53.833 3.8998 1 2451000 + 369 21012 271 272 401 401 0.01274120597770434 AEKPLEGP 8 Unmodified _AEKPLEGP_ 0 0 0 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 840.44616 839.438883 -0.42851 -0.00036014 0.28109 0.00023624 -0.14742 -0.0001239 840.4465958477033 54.726 0.2568 54.26 54.124 54.381 -0.46664 0.088712 0.00045733 NaN 99.799 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2451000 + 370 21012 271 272 0.01274120597770434 AEKRKFGF 8 Unmodified _AEKRKFGF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000571346.1_1_17:1586825-1588116:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7780456542969 2 491.777077 981.5396 0.40396 0.00019866 1.4911 0.00073331 1.8951 0.00093196 491.7774552873198 77.35 0.45581 77.4 77.149 77.605 0.050102 27 18 2 0 0 0 0.80232 1 42692 42692 5.2307 0.47466 1 2066000 371 8403 272 273 402 402 0.04809197371287155 AEKRPLCIP 9 Unmodified _AEKRPLCIP_ 0 0 0 REV__ENSG00000009724|ENST00000400897|MASP2 REV__ENSG00000009724|ENST00000400897|MASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7916259765625 2 513.791869 1025.56919 1.3474 0.00069229 -1.9587 -0.0010064 -0.61127 -0.00031406 513.790822895787 70.879 0.7491 70.914 70.592 71.341 0.035515 50 33 2 0 0 0 0.51218 1 39005 39005 6.7232 0 1 4535500 + 372 17036 273 274 403 403 0.05742393325090234 AEKTSMHSL 9 Unmodified _AEKTSMHSL_ 0 0 0 ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2683410644531 2 502.247492 1002.48043 0.42488 0.0002134 -2.8443 -0.0014285 -2.4194 -0.0012151 502.24581465134474 37.98 0.20209 37.98 37.826 38.028 0 16 9 2 0 0 0 0.20139 1 20161 20161 3.5965 0 1 575040 373 9433 274 275 404 404 -0.02071066705229896 AELAALTVY 9 Unmodified _AELAALTVY_ 0 0 0 ENST00000524195.1_1_8:75275206-75401007:+|nuORF ENST00000524195.1_1_8:75275206-75401007:+|nuORF ENST00000524195.1_1_8:75275206-75401007:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.52099609375 1 950.519325 949.512048 -0.67865 -0.00064507 -0.11911 -0.00011321 -0.79775 -0.00075828 950.5190197101574 71.433 0.44771 71.433 71.251 71.699 0 51 21 3 0 0 0 0.16226 1 39711 39711 26.884 0 1 4012800 374 14774 275 276 405 405 0.0352724932035926 AELAVALHPG 10 Unmodified _AELAVALHPG_ 0 0 0 ENST00000433258.5_1_2:71215729-71221885:-|nuORF ENST00000433258.5_1_2:71215729-71221885:-|nuORF ENST00000433258.5_1_2:71215729-71221885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2721557617188 2 489.274367 976.53418 0.57073 0.00027924 -2.5847 -0.0012646 -2.014 -0.00098539 489.2727782030495 36.721 0.57164 36.721 36.566 37.138 0 66 27 4 0 0 0 0.2829 1 19581 19581 28.487 1.6032 1 21497000 375 13286 276 277 406 406 0.04497473788808293 AELDPITE 8 Unmodified _AELDPITE_ 0 0 0 REV__ENST00000395254.7_1_10:64136007-64136079:+|nuORF REV__ENST00000395254.7_1_10:64136007-64136079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2215270996094 2 444.221465 886.428378 0.23263 0.00010334 0.85207 0.00037851 1.0847 0.00048185 444.22180546660246 46.912 0.75314 46.912 46.718 47.471 0 100 35 4 0 0 0 0.70294 1 25826 25826 16.942 3.4344 1 218850000 + 376 26473 277 278 407 407 -0.01937906847342674 AELDPITE 8 Unmodified _AELDPITE_ 0 0 0 REV__ENST00000395254.7_1_10:64136007-64136079:+|nuORF REV__ENST00000395254.7_1_10:64136007-64136079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2217102050781 2 444.221465 886.428378 0.6277 0.00027884 1.129 0.00050154 1.7567 0.00078037 444.2218767965445 47.14 0.3146 46.803 46.681 46.996 -0.33664 42 15 4 0 0 0 0.63229 1 25233 25233 23.148 2.6948 1 24988000 + 377 26473 277 278 408 408 -0.01937906847342674 AELMKLPM 8 Unmodified _AELMKLPM_ 0 0 0 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7501525878906 2 466.750824 931.487096 NaN NaN NaN NaN NaN NaN NaN 29.875 1 29.875 29.375 30.375 0 0 0 0 0.97348 1 15498 15498 5.7604 2.8712 1 378 5861 278 279 409 409 0.018611549218007895 AELNQAYVF 9 Unmodified _AELNQAYVF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7628173828125 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 69.088 1 69.088 68.588 69.588 0 0 0 0 0.82739 1 38498 38498 4.3292 1.0479 1 + 379 21892 279 280 410 410 -0.011505363107289668 AELQPRGSEAI 11 Unmodified _AELQPRGSEAI_ 0 0 0 REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF REV__ENST00000510119.1_1_5:137666906-137673844:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.3093872070312 2 585.809302 1169.60405 -1.1964 -0.00070087 -0.46011 -0.00026954 -1.6565 -0.00097041 585.8095711735893 32.374 0.11421 32.374 32.278 32.393 0 10 5 2 0 0 0 0.35681 1 16887 16887 23.79 2.1996 1 2947200 + 380 28138 280 281 411 411 0.026033076667772548 AELQSQYLQI 10 Unmodified _AELQSQYLQI_ 0 0 0 REV__nc|ENSG00000138778|Q02224-3|CENPE REV__nc|ENSG00000138778|Q02224-3|CENPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.81591796875 2 596.814053 1191.61355 0.042144 2.5152E-05 2.7315 0.0016302 2.7737 0.0016554 596.8160785101237 95.959 0.17999 95.959 95.819 95.999 0 15 11 2 0 0 0 0.6785 1 52995 52995 5.2969 1.7004 1 275670 + 381 20366 281 282 412 412 0.02541075952308347 AELSYVLYSH 10 Unmodified _AELSYVLYSH_ 0 0 0 ENST00000534358.5_2_11:118393008-118393158:+|nuORF ENST00000534358.5_2_11:118393008-118393158:+|nuORF ENST00000534358.5_2_11:118393008-118393158:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.29638671875 2 591.295496 1180.57644 -0.1604 -9.4845E-05 1.9622 0.0011603 1.8018 0.0010654 591.2960547279932 76.83 0.38399 76.351 76.177 76.561 -0.47945 39 17 3 0 0 0 0.64628 1 42022 42022 8.7454 0.83525 1 3250400 382 14952 282 283 413 413 -0.006625955934850936 AELWEEKP 8 Unmodified _AELWEEKP_ 0 0 0 ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.24853515625 2 501.250557 1000.48656 0.53177 0.00026655 -1.8489 -0.00092677 -1.3171 -0.00066022 501.2498740912411 68.381 0.31945 68.381 68.224 68.543 0 27 14 3 0 0 0 0.76266 1 38093 38093 11.64 0.81637 1 1011900 383 14182 283 284 414 414 -0.013662252020480992 AEMENIKAI 9 Unmodified _AEMENIKAI_ 0 0 0 ENST00000575475.2_1_17:5185712-5281605:+|nuORF;nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1 ENST00000575475.2_1_17:5185712-5281605:+|nuORF ENST00000575475.2_1_17:5185712-5281605:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.1893310546875 2 509.765517 1017.51648 0.10452 5.3282E-05 -0.48634 -0.00024792 -0.38182 -0.00019464 509.76557024520974 56.414 0.24241 56.414 56.322 56.564 0 15 10 2 0 0 0 0.19298 1 31338 31338 4.756 0 1 1163700 384 581 284 285 415 415 0.008423904716437391 AEMLSMKLID 10 Unmodified _AEMLSMKLID_ 0 0 0 REV__nc|ENSG00000158636|Q7Z589-6|EMSY REV__nc|ENSG00000158636|Q7Z589-6|EMSY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7965087890625 2 575.79596 1149.57737 0.52647 0.00030314 -0.49162 -0.00028307 0.034852 2.0067E-05 575.7960244104843 58.085 0.31756 58.085 57.944 58.262 0 40 12 4 0 0 0 0.32072 1 32319 32319 26.268 9.1552 1 11213000 + 385 21438 285 286 416 416 0.00856159459567607 AEMLSMKLID 10 Unmodified _AEMLSMKLID_ 0 0 0 REV__nc|ENSG00000158636|Q7Z589-6|EMSY REV__nc|ENSG00000158636|Q7Z589-6|EMSY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 575.79596 1149.57737 0.52647 0.00030314 -0.49162 -0.00028307 0.034852 2.0067E-05 575.7960244104843 58.085 0.31756 58.085 57.944 58.262 0 -0.0073022 4.2791E-05 NaN 26.268 40 12 4 NaN NaN NaN NaN 0 NaN NaN 0 11213000 + 386 21438 285 286 0.00856159459567607 AENEFVTLK 9 Unmodified _AENEFVTLK_ 0 0 0 ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538 ENSG00000185479|ENST00000252252|KRT6B ENSG00000185479|ENST00000252252|KRT6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7763061523438 2 525.776939 1049.53933 0.50437 0.00026518 0.34202 0.00017982 0.84638 0.00044501 525.777272545129 39.497 0.42997 39.497 39.362 39.792 0 26 20 2 0 0 0 0.018061 1 21168 21168 65.474 0 1 4104100 + 387 9374 286 287 417 417 0.016537328607682866 AENERALEL 9 Unmodified _AENERALEL_ 0 0 0 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 REV__nc|ENSG00000135205|Q8IYE0-2|CCDC146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7728271484375 2 522.769645 1043.52474 0.59542 0.00031127 4.0797 0.0021328 4.6752 0.002444 522.7723795745736 58.08 0.18911 58.08 57.99 58.179 0 11 7 2 0 0 0 0.34999 1 32368 32368 14.838 0.93222 1 1049800 + 388 20043 287 288 418 418 0.00471660712605626 AENGQPEPQN 10 Unmodified _AENGQPEPQN_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1;ENST00000479099.2_1_1:173907861-173910545:-|nuORF ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.239990234375 2 542.238709 1082.46287 NaN NaN NaN NaN NaN NaN NaN 30.606 1 30.606 30.106 31.106 0 0 0 0 0.83398 1 15907 15907 10.824 1.4408 1 389 4750 288 289 419 419 -0.07506690706509289 AENKLIILNGA 11 Unmodified _AENKLIILNGA_ 0 0 0 REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8963623046875 3 385.895917 1154.66592 0.74382 0.00028704 1.1547 0.0004456 1.8985 0.00073263 385.89627478727704 22.687 0.36508 19.909 19.738 20.103 -2.7784 65 26 3 0 0 0 0.58245 2 12292 12175;12292 12.228 2.1553 1 17925000 + 390 24470 289 290 420;421 421 0.09477659085905543 AENQLALEL 9 Unmodified _AENQLALEL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575447.1_1_16:24979927-25026645:-|nuORF;nc|ENSG00000140750|Q68EM7-4|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7691345214844 2 500.769114 999.523675 0.35841 0.00017948 -0.16921 -8.4738E-05 0.1892 9.4745E-05 500.7691604004584 64.069 0.23976 64.069 63.974 64.214 0 15 9 2 0 0 0 0.56862 1 35718 35718 3.2813 0 1 758910 391 5267 290 291 422 422 0.0238944634369318 AENYYAGEY 9 Unmodified _AENYYAGEY_ 0 0 0 REV__ENSG00000129152|ENST00000250003|MYOD1 REV__ENSG00000129152|ENST00000250003|MYOD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1636657714844 3 360.482062 1078.42436 0.082662 2.9798E-05 4.181 0.0015072 4.2637 0.001537 360.8170807257974 77.421 0.20676 77.421 77.265 77.472 0 19 12 2 0 0 0 0.20727 1 43026 43026 2.4985 0 1 1155700 + 392 19652 291 292 423 423 -0.1117199634102235 AEPGERPF 8 Unmodified _AEPGERPF_ 0 0 0 REV__ENST00000511774.1_3_5:43313183-43313303:-|nuORF REV__ENST00000511774.1_3_5:43313183-43313303:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7220764160156 2 451.721967 901.429381 NaN NaN NaN NaN NaN NaN NaN 15.738 1 15.738 15.238 16.238 0 0 0 0 0.97348 1 7609 7609 5.7604 0 1 + 393 28161 292 293 424 424 -0.025276476877593268 AEPHGNPEVAA 11 Unmodified _AEPHGNPEVAA_ 0 0 0 REV__ENSG00000182898|ENST00000368806|TCHHL1 REV__ENSG00000182898|ENST00000368806|TCHHL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2594604492188 2 546.259445 1090.50434 -0.43843 -0.0002395 -1.1216 -0.00061269 -1.56 -0.00085219 546.2587731927049 27.093 0.16273 27.093 26.992 27.155 0 10 7 2 0 0 0 0.27675 1 13964 13964 20.415 6.9067 1 1049400 + 394 23305 293 294 425 425 -0.037295099471975846 AEPHKSFFY 9 Unmodified _AEPHKSFFY_ 0 0 0 REV__nc|ENSG00000058804|Q9BTX1-3|NDC1 REV__nc|ENSG00000058804|Q9BTX1-3|NDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2760620117188 2 563.271824 1124.5291 NaN NaN NaN NaN NaN NaN NaN 84.19 1 83.69 83.19 84.19 -0.49961 0 0 0 0.85798 1 46074 46074 0.52476 0.12405 1 + 395 17314 294 295 426 426 -0.028188300738065664 AEPLQVDLL 9 Unmodified _AEPLQVDLL_ 0 0 0 nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ nc|ENSG00000103495|P56270-3|MAZ nc|ENSG00000103495|P56270-3|MAZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2825317382812 2 499.281857 996.549162 0.50581 0.00025254 0.023148 1.1557E-05 0.52896 0.0002641 499.2818396411844 72.727 0.51858 72.727 72.487 73.005 0 62 24 3 0 0 0 0.16226 2 40406 40406;40609 26.884 5.137 1 2550300 396 2146 295 296 427;428 427 0.050749208661500234 AEPNDTPISEL 11 Unmodified _AEPNDTPISEL_ 0 0 0 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7857055664062 2 593.285325 1184.5561 0.24839 0.00014736 -2.4859 -0.0014748 -2.2375 -0.0013275 593.2844575235174 38.253 0.32975 38.253 38.165 38.494 0 49 27 2 0 0 0 0.21511 1 20479 20479 31.268 1.4278 1 12583000 + 397 22286 296 297 429 429 -0.028798110439083757 AEPNDTPISEL 11 Unmodified _AEPNDTPISEL_ 0 0 0 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 593.285325 1184.5561 0.056701 3.364E-05 -1.0297 -0.0006109 -0.973 -0.00057727 593.2844455387228 38.596 0.20779 38.31 38.134 38.342 -0.28687 0.028238 0.00090091 NaN 31.268 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2278600 + 398 22286 296 297 -0.028798110439083757 AEPNLQQPY 9 Unmodified _AEPNLQQPY_ 0 0 0 REV__nc|ENSG00000178573|O75444|MAF REV__nc|ENSG00000178573|O75444|MAF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2086791992188 2 530.258914 1058.50327 -0.07273 -3.8566E-05 2.349 0.0012456 2.2763 0.001207 530.2600436805742 29.171 0.26484 29.171 29.043 29.308 0 21 12 2 0 0 0 0.19891 1 15060 15060 3.9444 0 1 2400500 + 399 23052 297 298 430 430 -0.023637243160919752 AEPPEVYF 8 Unmodified _AEPPEVYF_ 0 0 0 ENST00000415816.6_2_17:41158787-41158853:+|nuORF ENST00000415816.6_2_17:41158787-41158853:+|nuORF ENST00000415816.6_2_17:41158787-41158853:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2247314453125 2 476.226551 950.438549 -0.33491 -0.00015949 -1.6008 -0.00076235 -1.9357 -0.00092184 476.22533502675117 41.299 0.34384 41.299 41.137 41.48 0 42 16 3 0 0 0 0.67481 1 22297 22297 19.439 4.8573 1 7688300 400 13027 298 299 431 431 -0.03865299122094257 AEQASVCRT 9 Unmodified _AEQASVCRT_ 0 0 0 REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42 REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7291259765625 2 482.729466 963.444379 NaN NaN NaN NaN NaN NaN NaN 70.909 1 70.909 70.409 71.409 0 0 0 0 0.50124 1 39507 39507 15.847 3.3156 1 + 401 23686 299 300 432 432 -0.038805238820714294 AEQDWTFLVY 10 Unmodified _AEQDWTFLVY_ 0 0 0 REV__ENST00000595897.5_1_19:42407837-42410617:+|nuORF REV__ENST00000595897.5_1_19:42407837-42410617:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.802978515625 2 636.300778 1270.587 0.073977 4.7072E-05 1.0138 0.00064506 1.0877 0.00069213 636.8028217668159 81.246 0.32387 81.246 81.046 81.37 0 37 15 3 0 0 0 0.69377 1 45036 45036 3.5965 0.60125 1 734230 + 402 17598 300 301 433 433 -0.03746612939062288 AEQEEEQGDPI 11 Unmodified _AEQEEEQGDPI_ 0 0 0 REV__nc|ENSG00000135052|Q8NBJ4-2|GOLM1 REV__nc|ENSG00000135052|Q8NBJ4-2|GOLM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7678833007812 2 622.767497 1243.52044 0.23028 0.00014341 -1.107 -0.00068938 -0.87668 -0.00054597 622.7671734551884 48.167 0.31775 48.167 47.995 48.313 0 43 15 4 0 0 0 0.35681 1 26364 26364 23.79 11.549 1 18088000 + 403 20034 301 302 434 434 -0.09157893291580876 AEQERQASEM 10 Unmodified _AEQERQASEM_ 0 0 0 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2606201171875 2 589.758952 1177.50335 -0.098978 -5.8373E-05 0.9977 0.0005884 0.89872 0.00053003 590.2611235623401 35.812 0.18362 35.837 35.786 35.969 0.024971 14 8 2 0 0 0 0.69377 1 18982 18982 3.5965 0 1 1081900 404 10095 302 303 435 435 -0.07830092378435438 AEQIPPCLTSE 11 Unmodified _AEQIPPCLTSE_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.R1802Gfs*50|1|0.1|ENSG00000163625|chr4:84756946-84756946|G/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.28466796875 2 594.284271 1186.55399 0.072837 4.3286E-05 0.75926 0.00045121 0.83209 0.0004945 594.2846183805409 89.335 0.47997 89.335 89.076 89.556 0 71 24 4 0 0 0 0.33405 1 49465 49465 24.991 8.0487 1 5959300 405 7032 303 304 436 436 -0.03182563053405829 AEQIPPCLTSE 11 Unmodified _AEQIPPCLTSE_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.R1802Gfs*50|1|0.1|ENSG00000163625|chr4:84756946-84756946|G/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2845458984375 2 594.284271 1186.55399 0.52048 0.00030931 0.071732 4.2629E-05 0.59221 0.00035194 594.2842311568231 89.859 0.83805 89.358 88.913 89.751 -0.50171 135 40 5 0 0 0 0.33405 2 49227 49124;49227 24.991 8.0487 1 36203000 406 7032 303 304 437;438 438 -0.03182563053405829 AEQIPPCLTSE 11 Unmodified _AEQIPPCLTSE_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.R1802Gfs*50|1|0.1|ENSG00000163625|chr4:84756946-84756946|G/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2846069335938 2 594.284271 1186.55399 0.15059 8.9494E-05 1.2597 0.00074862 1.4103 0.00083811 594.7866407376454 89.354 0.29431 89.402 89.215 89.509 0.047852 15 10 2 0 0 0 0.33405 1 49666 49666 24.991 8.0487 1 14807000 407 7032 303 304 439 439 -0.03182563053405829 AEQLAEKEF 9 Unmodified _AEQLAEKEF_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7695922851562 2 532.766571 1063.51859 NaN NaN NaN NaN NaN NaN NaN 69.731 1 69.731 69.231 70.231 0 0 0 0 0.67877 1 38846 38846 10.074 2.1638 1 + 408 29516 304 305 440 440 -0.010628575189002731 AEQLEKIY 8 Unmodified _AEQLEKIY_ 0 0 0 ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1 ENST00000466152.5_1_20:49557422-49575060:-|nuORF ENST00000466152.5_1_20:49557422-49575060:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.8721923828125 2 497.266207 992.517862 -0.39963 -0.00019872 -1.4375 -0.00071483 -1.8371 -0.00091355 497.2650057653347 34.693 0.46188 34.693 34.402 34.864 0 51 23 4 0 0 0 8.7369 1 18400 18400 4.756 0 1 47157000 409 249 305 306 441 441 0.021303478320419345 AEQLISYGSCQ 11 Unmodified _AEQLISYGSCQ_ 0 0 0 nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF nc|ENSG00000177302|Q13472-3|TOP3A;ENST00000469739.6_1_17:18188617-18210429:-|nuORF nc|ENSG00000177302|Q13472-3|TOP3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.275146484375 2 599.774071 1197.53359 0.84807 0.00050865 -0.5129 -0.00030762 0.33517 0.00020103 599.7737301393165 81.01 0.38233 80.517 80.271 80.654 -0.49247 55 18 4 0 0 0 0.66968 1 44290 44290 7.1017 0.37856 1 13924000 410 8673;13844 306 307 442 442 -0.05727733713206362 AEQNRKDAEAW 11 Unmodified _AEQNRKDAEAW_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9 ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2127990722656 3 439.877586 1316.61093 -0.56706 -0.00024944 0.75013 0.00032997 0.18307 8.0527E-05 439.87795982865987 19.108 0.22947 19.131 19.023 19.253 0.023106 45 12 5 0 0 0 0.26767 1 9586 9586 33.821 27.587 1 7788300 + 411 169;167 307 308 443 443 -0.03471379452662404 AEQNRKDAEAW 11 Unmodified _AEQNRKDAEAW_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9 ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.31201171875 2 659.31274 1316.61093 -0.50413 -0.00033238 -0.00027934 -1.8417E-07 -0.50441 -0.00033256 659.3124662055743 19.092 0.15495 19.115 19.05 19.205 0.023106 12 7 2 0 0 0 0.53952 1 9621 9621 14.405 5.66 1 427250 + 412 169;167 307 308 444 444 -0.03471379452662404 AEQQPKSMKSP 11 Unmodified _AEQQPKSMKSP_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MSMS AL20221201_MKP_PDAC_01 4 410.8755798339844 3 410.876417 1229.60742 NaN NaN NaN NaN NaN NaN NaN 14.851 1 12.323 11.823 12.823 -2.5273 0 0 0 0.93969 1 7572 7572 1.1098 0 1 413 5327 308 309 445 445 0.0018023444911250408 AEQRSPLVL 9 Unmodified _AEQRSPLVL_ 0 0 0 REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7936096191406 2 506.792924 1011.57129 -0.85612 -0.00043387 1.3392 0.0006787 0.48308 0.00024482 506.79360900211174 36.346 0.36618 36.096 35.927 36.293 -0.2497 45 16 4 0 0 0 0.14 1 19027 19027 29.082 2.1979 1 29805000 + 414 19162 309 310 446 446 0.06597145334569632 AERCFSALGQV 11 Unmodified _AERCFSALGQV_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1979675292969 3 394.197491 1179.57064 NaN NaN NaN NaN NaN NaN NaN 14.041 1 14.041 13.541 14.541 0 0 0 0 0.94165 1 6652 6652 0.45452 0.1855 1 415 5001 310 311 447 447 -0.011960173768102322 AERDLYRDTW 10 Unmodified _AERDLYRDTW_ 0 0 0 ENSG00000242114|ENST00000266263|MTFP1;nc|ENSG00000242114|Q9UDX5-2|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.2930908203125 2 662.817658 1323.62076 0.059263 3.9281E-05 -0.0061548 -4.0795E-06 0.053109 3.5201E-05 662.81786150512 58.365 0.3092 58.365 58.179 58.489 0 26 11 3 0 0 0 0.71123 1 32399 32399 1.6526 0 1 1511200 416 10692 311 312 448 448 -0.028101914472927092 AERRQVHRQAF 11 Unmodified _AERRQVHRQAF_ 0 0 0 REV__CYP27B1|p.E269Q|1|0.83|ENSG00000111012|chr12:57764912-57764912|C/G|missense_variant REV__CYP27B1|p.E269Q|1|0.83|ENSG00000111012|chr12:57764912-57764912|C/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.8815307617188 2 699.379083 1396.74361 0.078245 5.4723E-05 0.18352 0.00012835 0.26177 0.00018308 699.3778230920154 82.241 0.62508 76.066 75.73 76.355 -6.1757 48 34 2 0 0 0 0.50515 1 54029 54029 16.149 0 1 14837000 + 417 16901 312 313 449 449 0.06111109794642289 AERRQVHRQAF 11 Unmodified _AERRQVHRQAF_ 0 0 0 REV__CYP27B1|p.E269Q|1|0.83|ENSG00000111012|chr12:57764912-57764912|C/G|missense_variant REV__CYP27B1|p.E269Q|1|0.83|ENSG00000111012|chr12:57764912-57764912|C/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.8822021484375 2 699.379083 1396.74361 0.15411 0.00010778 1.8083 0.0012647 1.9624 0.0013725 699.3803311684503 82.6 0.64114 76.424 76.106 76.747 -6.1757 49 36 2 0 0 0 0.53952 1 54289 54289 14.405 0.79051 1 15470000 + 418 16901 312 313 450 450 0.06111109794642289 AERRRRRRRR 10 Unmodified _AERRRRRRRR_ 0 0 0 REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 734.4573364257812 2 734.456856 1466.89916 NaN NaN NaN NaN NaN NaN NaN 105.52 1 99.349 98.849 99.849 -6.1757 0 0 0 1.0019 1 70704 70704 0.45834 0.18932 1 + 419 26107 313 314 451 451 0.18438618159416365 AERRRRRRWHW 11 Unmodified _AERRRRRRWHW_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 833.3391723632812 2 832.964514 1663.91448 NaN NaN NaN NaN NaN NaN NaN 26.762 1 23.726 23.226 24.226 -3.0365 0 0 0 0.9435 1 14782 14782 0 0 1 420 11772 314 315 452 452 0.10907484956624103 AESEKNEAEI 10 Unmodified _AESEKNEAEI_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2646484375 2 560.26185 1118.50915 0.70686 0.00039603 3.0439 0.0017054 3.7507 0.0021014 560.2637267763488 60.134 0.2825 60.081 59.977 60.259 -0.053062 31 15 3 0 0 0 0.20962 1 32789 32789 32.786 3.7041 1 6652200 + 421 22882 315 316 453 453 -0.04536670595098258 AESEKNEAEI 10 Unmodified _AESEKNEAEI_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.26185 1118.50915 0.70686 0.00039603 3.0439 0.0017054 3.7507 0.0021014 560.2637267763488 60.134 0.2825 60.081 59.977 60.259 -0.053062 0 0 NaN 32.786 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6652200 + 422 22882 315 316 -0.04536670595098258 AESGLAIVQL 10 Unmodified _AESGLAIVQL_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7879333496094 2 500.787307 999.560061 0.45555 0.00022814 0.72999 0.00036557 1.1855 0.0005937 500.7876935172574 66.109 0.3017 66.109 65.959 66.26 0 26 14 2 0 0 0 0.043729 1 36930 36930 61.357 15.337 1 4500800 + 423 23101 316 317 454 454 0.060263232404167866 AESKLLSYA 9 Unmodified _AESKLLSYA_ 0 0 0 REV__ENSG00000179387|ENST00000323570|ELMOD2 REV__ENSG00000179387|ENST00000323570|ELMOD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2671203613281 2 491.266207 980.517862 NaN NaN NaN NaN NaN NaN NaN 94.066 1 93.646 93.146 94.146 -0.42044 0 0 0 0.76439 1 51394 51394 7.2892 2.0586 1 + 424 23095 317 318 455 455 0.026823478320466165 AESKTECLF 9 Unmodified _AESKTECLF_ 0 0 0 REV__nc|ENSG00000114757|Q8IYB4-4|PEX5L REV__nc|ENSG00000114757|Q8IYB4-4|PEX5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.242919921875 2 514.241875 1026.4692 0.24183 0.00012436 -0.44135 -0.00022696 -0.19952 -0.0001026 514.2418597821688 63.446 0.86424 63.446 62.985 63.85 0 59 40 2 0 0 0 0.18465 2 35401 35303;35401 24.674 3.9383 1 5829800 + 425 18931 318 319 456;457 457 -0.0429788879937405 AESLFDELESR 11 Unmodified _AESLFDELESR_ 0 0 0 REV__ENSG00000167601|ENST00000301178|AXL REV__ENSG00000167601|ENST00000301178|AXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.3087768554688 2 648.309332 1294.60411 -1.3416 -0.00086976 -0.1655 -0.0001073 -1.5071 -0.00097705 648.3093527140384 32.531 0.33982 32.531 32.432 32.772 0 62 20 5 0 0 0 0.18636 1 16966 16966 32.786 2.9451 1 36233000 + 426 22224 319 320 458 458 -0.03140737123908366 AESLSGEAL 9 Unmodified _AESLSGEAL_ 0 0 0 ENST00000263256.6_1_22:42003308-42016868:-|nuORF ENST00000263256.6_1_22:42003308-42016868:-|nuORF ENST00000263256.6_1_22:42003308-42016868:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7193603515625 2 438.71909 875.423627 -0.57908 -0.00025405 0.5624 0.00024673 -0.016684 -7.3198E-06 438.71932533414525 19.055 0.43966 19.078 18.784 19.223 0.023106 62 35 2 0 0 0 0.052168 1 9561 9561 44.407 2.3125 1 1344600 427 11284 320 321 459 459 -0.019067909900968516 AESSDCDEWN 10 Unmodified _AESSDCDEWN_ 0 0 0 REV__ENST00000518225.5_1_8:25316927-25317966:+|nuORF REV__ENST00000518225.5_1_8:25316927-25317966:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7723388671875 2 578.198393 1154.38223 0.61408 0.00035506 -0.95294 -0.00055099 -0.33886 -0.00019593 578.1975707548461 60.797 0.36395 60.797 60.474 60.838 0 18 15 2 0 0 0 0.23896 1 33829 33829 3.5965 0.60125 1 620860 + 428 28242 321 322 460 460 -0.18878339811703881 AESSKQHSL 9 Unmodified _AESSKQHSL_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7796020507812 2 493.748713 985.482873 0.55184 0.00027247 -1.8049 -0.00089117 -1.2531 -0.00061869 493.7465588697654 45.918 0.18362 45.918 45.86 46.044 0 16 8 2 0 0 0 0.17275 1 25138 25138 15.847 4.2069 1 1738100 + 429 22894 322 323 461 461 -0.010448949758938397 AETECQNAEY 10 Unmodified _AETECQNAEY_ 0 0 0 CON__P02535-1 CON__P02535-1 CON__P02535-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2255859375 2 579.22441 1156.43427 0.44292 0.00025655 0.052111 3.0184E-05 0.49503 0.00028673 579.7258746496777 46.694 0.12811 41.614 41.569 41.697 -5.0805 36 27 2 0 0 0 0.63399 1 28906 28906 9.3831 2.0939 1 96902000 + 430 158 323 324 462 462 -0.1376917639797739 AETIEQGCTDF 11 Unmodified _AETIEQGCTDF_ 0 0 0 REV__ENSG00000169814|ENST00000643237|BTD REV__ENSG00000169814|ENST00000643237|BTD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2545776367188 2 607.255711 1212.49687 0.18161 0.00011028 -1.0362 -0.00062924 -0.8546 -0.00051896 607.2549027895872 78.868 0.29282 78.382 78.213 78.506 -0.48596 17 11 2 0 0 0 0.71341 1 43217 43217 2.9952 0.69251 1 1018800 + 431 22426 324 325 463 463 -0.10088030329802677 AETVDWHHLFQ 11 Unmodified _AETVDWHHLFQ_ 0 0 0 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.8265991210938 2 691.828026 1381.6415 -0.86637 -0.00059938 -2.3142 -0.001601 -3.1805 -0.0022004 692.3283291981176 28.252 0.18142 28.252 28.149 28.33 0 15 8 3 0 0 0 0.65108 1 14594 14594 8.7454 1.6437 1 1349000 + 432 20195 325 326 464 464 -0.03405601067652242 AEVMAEYQCR 10 Unmodified _AEVMAEYQCR_ 0 0 0 REV__ENSG00000108759|ENST00000225899|KRT32 REV__ENSG00000108759|ENST00000225899|KRT32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2655029296875 2 600.262816 1198.51108 0.16251 9.7548E-05 1.9253 0.0011557 2.0878 0.0012532 600.2641776486323 57.979 0.30848 57.979 57.794 58.103 0 22 12 2 0 0 0 0.67413 1 32226 32226 10.074 5.3179 1 1905300 + + 433 16859 326 327 465 465 -0.08023656382488298 AEVMAEYQCR 10 Unmodified _AEVMAEYQCR_ 0 0 0 REV__ENSG00000108759|ENST00000225899|KRT32 REV__ENSG00000108759|ENST00000225899|KRT32 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 600.262816 1198.51108 0.16251 9.7548E-05 1.9253 0.0011557 2.0878 0.0012532 600.2641776486323 57.979 0.30848 57.979 57.794 58.103 0 0 0 NaN 10.074 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1905300 + + 434 16859 326 327 -0.08023656382488298 AEVQRERYLRN 11 Unmodified _AEVQRERYLRN_ 0 0 0 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 REV__nc|ENSG00000175556|Q496Y0-3|LONRF3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2632751464844 3 478.59178 1432.75351 -0.31601 -0.00015124 -3.9048 -0.0018688 -4.2208 -0.00202 478.590132351173 29.74 0.13669 29.74 29.624 29.76 0 8 6 2 0 0 0 0.30584 1 15385 15385 1.3296 0.21989 1 1981200 + 435 22881 327 328 466 466 0.0544425300936382 AEVRLPRF 8 Unmodified _AEVRLPRF_ 0 0 0 ENST00000380814.4_1_13:29292859-29293099:-|nuORF ENST00000380814.4_1_13:29292859-29293099:-|nuORF ENST00000380814.4_1_13:29292859-29293099:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.203857421875 2 494.290351 986.566149 -0.012342 -6.1007E-06 -1.6035 -0.0007926 -1.6158 -0.0007987 494.2895286405152 51.833 0.24113 51.833 51.689 51.93 0 21 10 3 0 0 0 8.7369 1 28572 28572 0.69038 0.23204 1 5873400 436 12607 328 329 467 467 0.07232886262602278 AEWRRLTRHML 11 Unmodified _AEWRRLTRHML_ 0 0 0 REV__ENSG00000160813|ENST00000292330|PPP1R35 REV__ENSG00000160813|ENST00000292330|PPP1R35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.9547729492188 4 367.954307 1467.78812 1.27 0.00046728 -0.011925 -4.388E-06 1.258 0.0004629 368.2054977657639 18.173 0.81164 15.551 15.231 16.043 -2.6215 144 69 3 0 0 0 0.72131 1 9617 9617 2.2527 0.79761 1 6044700 + 437 21569 329 330 468 468 0.07293797616443953 AEWSARCHDM 10 Unmodified _AEWSARCHDM_ 0 0 0 REV__nc|ENSG00000117091|P09326-2|CD48 REV__nc|ENSG00000117091|P09326-2|CD48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.4998168945312 3 402.499064 1204.47536 0.63383 0.00025511 0.64403 0.00025922 1.2779 0.00051434 402.4991431544465 64.094 0.20636 63.609 63.532 63.739 -0.48512 16 9 2 0 0 0 0.71981 1 34998 34998 0.69767 0.33099 1 680910 + 438 29592 330 331 469 469 -0.1186969383950327 AEYASLMEILY 11 Unmodified _AEYASLMEILY_ 0 0 0 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8828430175781 3 434.881057 1301.62134 NaN NaN NaN NaN NaN NaN NaN 23.028 1 23.028 22.528 23.528 0 0 0 0 0.94165 1 11728 11728 1.3296 0.55311 1 439 7763 331 332 470 470 -0.017405328424274558 AEYFYEFL 8 Unmodified _AEYFYEFL_ 0 0 0 WIF1|p.R107P|1|0.46|ENSG00000156076|chr12:65077823-65077823|C/G|missense_variant;ENSG00000156076|ENST00000286574|WIF1 WIF1|p.R107P|1|0.46|ENSG00000156076|chr12:65077823-65077823|C/G|missense_variant WIF1|p.R107P|1|0.46|ENSG00000156076|chr12:65077823-65077823|C/G|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7263793945312 2 541.247483 1080.48041 0.83648 0.00045274 -0.33092 -0.00017911 0.50556 0.00027363 541.2469969191078 51.241 0.13467 51.241 51.167 51.302 0 8 5 2 0 0 0 8.7369 1 28270 28270 9.3474 0 1 1258200 440 6427 332 333 471 471 -0.05660743433577409 AEYPAVLC 8 Unmodified _AEYPAVLC_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MSMS AL20221201_MKP_PDAC_01 4 433.2087707519531 2 433.209847 864.40514 NaN NaN NaN NaN NaN NaN NaN 33.548 1 29.563 29.063 30.063 -3.9853 0 0 0 0.9706 1 19248 19248 6.3541 0 1 + 441 22789 333 334 472 472 -0.03248624165655656 AEYYLKAFYF 10 Unmodified _AEYYLKAFYF_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1;REV__ENSG00000153165|ENST00000409886|RGPD3;REV__ENSG00000153201|ENST00000283195|RANBP2 REV__ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8856506347656 3 438.885018 1313.63323 0.20234 8.8803E-05 1.0231 0.00044903 1.2255 0.00053784 438.88561748146174 30.007 0.31323 30.037 29.894 30.207 0.030106 37 12 4 0 0 0 0.67033 1 15757 15757 3.3196 0 1 13739000 + 442 21158;21156;23491 334 335 473 473 -0.011045480369602956 AFAEKRST 8 Unmodified _AFAEKRST_ 0 0 0 nc|ENSG00000162139|Q9UQ49|NEU3;ENSG00000162139|ENST00000294064|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2440185546875 2 455.243067 908.47158 NaN NaN NaN NaN NaN NaN NaN 87.75 1 87.246 86.746 87.746 -0.50423 0 0 0 0.97444 1 47998 47998 0.79363 0.10326 1 443 6837 335 336 474 474 0.013683277206155253 AFALERTKK 9 Unmodified _AFALERTKK_ 0 0 0 REV__ENST00000586702.1_1_19:11310175-11313198:-|nuORF REV__ENST00000586702.1_1_19:11310175-11313198:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3145751953125 2 532.316566 1062.61858 1.5411 0.00082036 -0.89678 -0.00047737 0.64433 0.00034299 532.3158394671763 103.49 0.081848 97.31 97.265 97.347 -6.1757 33 19 2 0 0 0 0.54444 1 69378 69378 4.756 0.42677 1 9615200 + 444 19698 336 337 475 475 0.0897742460556401 AFAPTWGS 8 Unmodified _AFAPTWGS_ 0 0 0 REV__nc|ENSG00000166922|P05408-2|SCG5 REV__nc|ENSG00000166922|P05408-2|SCG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.7010803222656 2 418.700503 835.386454 0.54185 0.00022687 -0.52217 -0.00021863 0.019681 8.2404E-06 418.70013593349495 82.914 0.34941 82.417 82.263 82.613 -0.49751 24 14 2 0 0 0 0.71616 1 45387 45387 15.768 1.1865 1 1274000 + 445 22165 337 338 476 476 -0.03782417745185285 AFAPTWGS 8 Unmodified _AFAPTWGS_ 0 0 0 REV__nc|ENSG00000166922|P05408-2|SCG5 REV__nc|ENSG00000166922|P05408-2|SCG5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 418.700503 835.386454 0.0057849 2.4221E-06 1.8748 0.00078497 1.8806 0.00078739 418.70036441837146 82.375 0.1656 82.375 82.314 82.48 0 -0.020811 0.0018421 NaN 15.768 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 305140 + 446 22165 337 338 -0.03782417745185285 AFASNLPTL 9 Unmodified _AFASNLPTL_ 0 0 0 nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA nc|ENSG00000063169|Q9NZM4-2|BICRA nc|ENSG00000063169|Q9NZM4-2|BICRA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2572326660156 2 467.255643 932.496732 NaN NaN NaN NaN NaN NaN NaN 70.524 1 70.046 69.546 70.546 -0.47735 0 0 0 0.080768 1 38577 38577 48.346 6.2513 1 447 856 338 339 477 477 0.027783825231722403 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 948.5404663085938 1 948.54006 947.532783 0.31392 0.00029777 0.44088 0.00041819 0.7548 0.00071596 948.5404087476702 94.775 0.38344 94.355 94.146 94.53 -0.42044 43 18 3 0 0 0 0.045537 2 51803 51708;51803 46.921 2.5139 1 3014700 + 448 24784 339 340 478;479 479 0.05691839700057244 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 948.54150390625 1 948.54006 947.532783 2.2691 0.0021523 0.70362 0.00066741 2.9727 0.0028197 948.5413225018062 94.353 0.27914 94.367 94.184 94.464 0.014244 13 9 2 0 0 0 0.18465 1 52428 52428 24.674 0 1 2113500 + 449 24784 339 340 480 480 0.05691839700057244 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5416259765625 1 948.54006 947.532783 0.75686 0.00071791 0.5411 0.00051326 1.298 0.0012312 948.5405046290308 100.3 0.17456 94.125 93.996 94.171 -6.1757 24 10 3 0 0 0 0.078417 1 66997 66997 38.151 2.107 1 94637000 + 450 24784 339 340 481 481 0.05691839700057244 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 948.54006 947.532783 0.31392 0.00029777 0.44088 0.00041819 0.7548 0.00071596 948.5404087476702 94.775 0.38344 94.355 94.146 94.53 -0.42044 0.072187 -3.797E-05 NaN 46.921 43 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3014700 + 451 24784 339 340 0.05691839700057244 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 948.54006 947.532783 2.2691 0.0021523 0.70362 0.00066741 2.9727 0.0028197 948.5413225018062 94.353 0.27914 94.367 94.184 94.464 0.014244 0.084859 0.00021125 NaN 46.921 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2113500 + 452 24784 339 340 0.05691839700057244 AFATVDLLV 9 Unmodified _AFATVDLLV_ 0 0 0 REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF REV__ENST00000225737.10_1_17:19808319-19808406:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 948.54006 947.532783 0.75686 0.00071791 0.5411 0.00051326 1.298 0.0012312 948.5405046290308 100.3 0.17456 94.125 93.996 94.171 -6.1757 -0.15705 5.7096E-05 NaN 46.921 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 94637000 + 453 24784 339 340 0.05691839700057244 AFAVDYYTF 9 Unmodified _AFAVDYYTF_ 0 0 0 nc|ENSG00000004809|Q86VW1-3|SLC22A16;nc|ENSG00000004809|Q86VW1-2|SLC22A16;ENSG00000004809|ENST00000368919|SLC22A16 nc|ENSG00000004809|Q86VW1-3|SLC22A16 nc|ENSG00000004809|Q86VW1-3|SLC22A16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2525634765625 2 548.752933 1095.49131 0.49879 0.00027371 -3.9745 -0.002181 -3.4758 -0.0019073 548.7509263456487 36.131 0.17579 36.131 36.01 36.186 0 13 8 2 0 0 0 0.2001 1 19150 19150 23.148 2.6948 1 2355500 454 284 340 341 482 482 -0.05261341059303959 AFAVGCNNCPF 11 Unmodified _AFAVGCNNCPF_ 0 0 0 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 MSMS AL20221201_MKP_PDAC_01 4 381.4962768554688 3 381.496772 1141.46849 NaN NaN NaN NaN NaN NaN NaN 46.67 1 41.59 41.09 42.09 -5.0805 0 0 0 0.93613 1 28874 28874 2.4348 0 1 + 455 24612 341 342 483 483 -0.0965900672006228 AFCCDYLF 8 Unmodified _AFCCDYLF_ 0 0 0 ENST00000447595.1_1_1:179054682-179054961:+|nuORF ENST00000447595.1_1_1:179054682-179054961:+|nuORF ENST00000447595.1_1_1:179054682-179054961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.1980590820312 2 491.195882 980.377211 NaN NaN NaN NaN NaN NaN NaN 75.2 1 74.722 74.222 75.222 -0.47714 0 0 0 0.9706 1 41160 41160 6.3541 3.4649 1 456 13482 342 343 484 484 -0.11376270417395062 AFCDLHYV 8 Unmodified _AFCDLHYV_ 0 0 0 REV__ENST00000524379.1_1_11:8248475-8284909:-|nuORF REV__ENST00000524379.1_1_11:8248475-8284909:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2214050292969 2 484.220746 966.426938 NaN NaN NaN NaN NaN NaN NaN 85.94 1 85.94 85.44 86.44 0 0 0 0 0.97444 1 47613 47613 0.79363 0 1 + 457 17241 343 344 485 485 -0.05761819417080005 AFDASRTSF 9 Unmodified _AFDASRTSF_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2380981445312 2 501.237981 1000.46141 0.77627 0.0003891 -0.2836 -0.00014215 0.49267 0.00024695 501.2377584764855 36.347 0.23783 36.347 36.229 36.467 0 19 11 2 0 0 0 0.047788 1 19274 19274 45.7 15.063 1 6924200 458 2292 344 345 486 486 -0.03880280004614178 AFDASRTSF 9 Unmodified _AFDASRTSF_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2386779785156 2 501.237981 1000.46141 -0.69135 -0.00034653 0.45844 0.00022979 -0.23291 -0.00011674 501.2382280566311 36.644 0.21852 36.395 36.253 36.471 -0.2497 16 9 2 0 0 0 0.015688 1 19199 19199 67.838 43.818 1 9511300 459 2292 344 345 487 487 -0.03880280004614178 AFDASRTSF 9 Unmodified _AFDASRTSF_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL ENSG00000105245|ENST00000252891|NUMBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2399597167969 2 501.237981 1000.46141 0.36281 0.00018186 0.66464 0.00033314 1.0275 0.000515 501.23842047642137 41.433 0.54845 36.825 36.513 37.062 -4.6079 56 35 2 0 0 0 0.0074582 2 24827 24827;24962 110.55 70.595 1 36436000 460 2292 344 345 488;489 488 -0.03880280004614178 AFDDAIAEL 9 Unmodified _AFDDAIAEL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE|p.A197T|1|0.04|ENSG00000108953|chr17:1354337-1354337|C/T|missense_variant;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7339477539062 2 482.73474 963.454927 -0.09318 -4.4981E-05 -0.8559 -0.00041317 -0.94908 -0.00045816 482.7342413426472 71.403 0.41222 71.403 71.187 71.599 0 52 20 3 0 0 0 0.0090851 1 39750 39750 85.357 45.399 1 8367100 461 4050;2621;7941 345 346 490 490 -0.028262179559988 AFDDAIAEL 9 Unmodified _AFDDAIAEL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE|p.A197T|1|0.04|ENSG00000108953|chr17:1354337-1354337|C/T|missense_variant;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4519653320312 1 964.462204 963.454927 -0.19264 -0.00018579 -4.1276 -0.0039809 -4.3202 -0.0041667 964.4579780063298 71.427 0.24133 71.427 71.307 71.548 0 38 11 4 0 0 0 0.019303 1 39756 39756 64.236 24.279 1 12671000 462 4050;2621;7941 345 346 491 491 -0.028262179559988 AFDDAIAEL 9 Unmodified _AFDDAIAEL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE|p.A197T|1|0.04|ENSG00000108953|chr17:1354337-1354337|C/T|missense_variant;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.4656982421875 1 964.462204 963.454927 0.92293 0.00089013 -2.1049 -0.0020301 -1.182 -0.00114 964.4594963807626 79.987 0.31648 73.811 73.626 73.942 -6.1757 29 18 2 0 0 0 0.038285 2 52390 52390;52519 50.855 15.211 1 21599000 463 4050;2621;7941 345 346 492;493 492 -0.028262179559988 AFDDAIAEL 9 Unmodified _AFDDAIAEL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE|p.A197T|1|0.04|ENSG00000108953|chr17:1354337-1354337|C/T|missense_variant;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7347717285156 2 482.73474 963.454927 1.0982 0.00053012 -0.063411 -3.0611E-05 1.0347 0.00049951 482.7345755357238 80.031 0.42442 73.855 73.612 74.037 -6.1757 46 25 2 0 0 0 0.052168 1 52400 52400 44.407 22.66 1 36396000 464 4050;2621;7941 345 346 494 494 -0.028262179559988 AFDDRGLY 8 Unmodified _AFDDRGLY_ 0 0 0 ENSG00000037749|ENST00000522782|MFAP3 ENSG00000037749|ENST00000522782|MFAP3 ENSG00000037749|ENST00000522782|MFAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7266235351562 2 478.727249 955.439946 -0.57788 -0.00027665 1.2951 0.00062 0.71722 0.00034336 478.72792112143213 28.143 0.1611 28.143 28.09 28.251 0 12 7 2 0 0 0 0.80624 1 14539 14539 2.8892 0 1 1017600 465 629 346 347 495 495 -0.03955665033322475 AFDDVLYNI 9 Unmodified _AFDDVLYNI_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2634887695312 2 535.263665 1068.51278 -0.096176 -5.148E-05 0.17578 9.4091E-05 0.079608 4.2611E-05 535.2632772893592 61.525 0.25736 61.035 60.88 61.137 -0.48932 20 11 2 0 0 0 0.48152 1 33548 33548 8.5933 0 1 956390 + 466 21892 347 348 496 496 -0.018739560305675695 AFDEAIAEL 9 Unmodified _AFDEAIAEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7425842285156 2 489.742565 977.470577 0.17834 8.7343E-05 0.09175 4.4934E-05 0.27009 0.00013228 489.7427042809371 69.723 0.48739 69.723 69.423 69.91 0 91 22 6 0 0 0 0.012148 2 38855 38754;38855 74.423 30.564 1 27689000 467 4588 348 349 497;498 498 -0.01905931438943753 AFDEAIAEL 9 Unmodified _AFDEAIAEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.4774169921875 1 978.477854 977.470577 0.083779 8.1976E-05 0.49661 0.00048592 0.58038 0.00056789 978.4780765627982 69.707 0.37582 69.707 69.511 69.887 0 62 17 5 0 0 0 0.0082281 2 38866 38770;38866 92.822 34.143 1 11598000 468 4588 348 349 499;500 500 -0.01905931438943753 AFDEAIAEL 9 Unmodified _AFDEAIAEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7427062988281 2 489.742565 977.470577 0.82253 0.00040283 0.54761 0.00026819 1.3701 0.00067102 489.7427420452553 77.808 0.60934 71.633 71.346 71.955 -6.1757 75 34 3 0 0 0 0.0090851 2 50791 50791;50916 85.357 41.498 1 49106000 469 4588 348 349 501;502 501 -0.01905931438943753 AFDEAIAEL 9 Unmodified _AFDEAIAEL_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;ENST00000399764.3_1_9:34922183-34922564:-|nuORF ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.47705078125 1 978.477854 977.470577 0.68451 0.00066978 -0.2647 -0.000259 0.41982 0.00041078 978.4773899226795 77.801 0.45547 71.626 71.392 71.847 -6.1757 45 25 2 0 0 0 0.0082281 2 50914 50796;50914 92.822 34.143 1 18899000 470 4588 348 349 503;504 504 -0.01905931438943753 AFDEAKADF 9 Unmodified _AFDEAKADF_ 0 0 0 nc|ENSG00000166401|P50452-3|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-3|SERPINB8 nc|ENSG00000166401|P50452-3|SERPINB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2322998046875 2 507.232364 1012.45018 0.71565 0.000363 0.20913 0.00010608 0.92477 0.00046907 507.2323967370001 38.569 0.31113 38.569 38.414 38.725 0 42 15 4 0 0 0 0.0088668 1 20572 20572 87.258 39.51 1 13873000 471 7482 349 350 505 505 -0.055551020987536504 AFDEIVAL 8 Unmodified _AFDEIVAL_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.4667358398438 1 877.466561 876.459284 0.12143 0.00010655 1.3471 0.001182 1.4685 0.0012886 877.4674162551105 78.035 0.24957 78.035 77.922 78.172 0 15 10 2 0 0 0 0.6895 1 43353 43353 18.135 4.6271 1 538690 472 1645 350 351 506 506 0.01611291257574976 AFDFSFLND 9 Unmodified _AFDFSFLND_ 0 0 0 EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant;ENSG00000110723|ENST00000265843|EXPH5 EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2398681640625 2 538.24019 1074.46583 0.19686 0.00010596 -0.17193 -9.2541E-05 0.024927 1.3417E-05 538.240350036121 59.739 0.18257 59.249 59.11 59.293 -0.49079 10 8 2 0 0 0 0.49272 1 32523 32523 7.9102 3.1541 1 1247900 473 2738 351 352 507 507 -0.06842815581717332 AFDGLWCPFKL 11 Unmodified _AFDGLWCPFKL_ 0 0 0 ENST00000264192.7_1_2:158272088-158272232:-|nuORF ENST00000264192.7_1_2:158272088-158272232:-|nuORF ENST00000264192.7_1_2:158272088-158272232:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8849792480469 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 49.038 1 49.038 48.538 49.538 0 0 0 0 0.93984 1 26955 26955 2.6312 0.72486 1 474 11307 352 353 508 508 0.0012721818509362492 AFDHFSRDL 9 Unmodified _AFDHFSRDL_ 0 0 0 ENST00000301738.8_1_16:2757389-2757602:+|nuORF ENST00000301738.8_1_16:2757389-2757602:+|nuORF ENST00000301738.8_1_16:2757389-2757602:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2645874023438 2 554.26453 1106.51451 0.85133 0.00047186 1.9675 0.0010905 2.8188 0.0015624 554.26561378006 73.677 0.19463 73.677 73.568 73.763 0 10 7 2 0 0 0 0.54444 1 41051 41051 4.756 0.81161 1 435270 475 11573 353 354 509 509 -0.03448902221953176 AFDIAEEL 8 Unmodified _AFDIAEEL_ 0 0 0 nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3 nc|ENSG00000071655|O95983-2|MBD3 nc|ENSG00000071655|O95983-2|MBD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2250671386719 2 454.224008 906.433463 0.7804 0.00035448 1.0224 0.00046442 1.8028 0.0008189 454.22467316142144 73.912 0.18648 73.912 73.807 73.994 0 12 7 2 0 0 0 0.77907 1 41137 41137 10.183 3.8293 1 396220 476 1061 354 355 510 510 -0.023496029847137834 AFDIAEEL 8 Unmodified _AFDIAEEL_ 0 0 0 nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3 nc|ENSG00000071655|O95983-2|MBD3 nc|ENSG00000071655|O95983-2|MBD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 907.4421997070312 1 907.44074 906.433463 0.39019 0.00035407 0.90609 0.00082222 1.2963 0.0011763 907.441512965283 73.912 0.28292 73.912 73.738 74.021 0 20 11 2 0 0 0 0.78849 1 41192 41192 9.3474 0 1 1063500 477 1061 354 355 511 511 -0.023496029847137834 AFDIAEKEL 9 Unmodified _AFDIAEKEL_ 0 0 0 nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;ENSG00000243156|ENST00000441493|MICAL3 nc|ENSG00000243156|Q7RTP6-2|MICAL3 nc|ENSG00000243156|Q7RTP6-2|MICAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2704467773438 2 518.27149 1034.52843 0.61099 0.00031666 0.16299 8.4475E-05 0.77399 0.00040113 518.2717072536275 51.514 0.27247 51.514 51.393 51.665 0 21 12 2 0 0 0 0.078314 2 28507 28438;28507 38.176 5.3899 1 17366000 478 10705 355 356 512;513 513 0.012543304864720994 AFDISKKEM 9 Unmodified _AFDISKKEM_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8519592285156 3 356.85132 1067.53213 1.5537 0.00055443 -0.88167 -0.00031463 0.67201 0.00023981 356.8511207794967 35.159 0.4878 31.064 30.752 31.24 -4.0951 80 28 4 0 0 0 0.13231 2 20235 20235;20359 28.234 15.298 1 82085000 479 4588 356 357 514;515 514 0.0010667698868473963 AFDISKKEM 9 Unmodified _AFDISKKEM_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7736206054688 2 534.773342 1067.53213 0.80132 0.00042852 0.19796 0.00010586 0.99928 0.00053439 534.7736089488081 35.168 0.35355 31.073 30.838 31.192 -4.0951 37 20 2 0 0 0 0.062454 2 20281 20281;20408 41.956 23.809 1 15605000 480 4588 356 357 516;517 516 0.0010667698868473963 AFDISKKEM 9 Unmodified _AFDISKKEM_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 356.85132 1067.53213 0.17856 6.372E-05 0.10111 3.6081E-05 0.27967 9.9801E-05 356.8514160194232 31.36 0.1861 31.36 31.255 31.441 0 0.12707 0.0006225 NaN 22.775 23 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1455000 481 4588 356 357 0.0010667698868473963 AFDISKKEM 9 Unmodified _AFDISKKEM_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 356.85132 1067.53213 0.20725 7.3957E-05 1.2196 0.0004352 1.4268 0.00050916 356.8517561717288 31.379 0.14831 31.276 31.161 31.309 -0.10269 0.042725 0.0018199 NaN 22.775 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 830880 482 4588 356 357 0.0010667698868473963 AFDISKKEM 9 Oxidation (M) _AFDISKKEM(Oxidation (M))_ AFDISKKEM(1) AFDISKKEM(50) 0 0 1 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MSMS AL20221201_MKP_PDAC_01 4 542.7716674804688 2 542.7708 1083.52705 NaN NaN NaN NaN NaN NaN NaN 24.095 1 21.267 20.767 21.767 -2.8273 0 0 0 0.076083 1 13092 13092 49.554 15.452 1 483 4588 356 358 518 518 833 -0.011376268739468287 AFDKHMNL 8 Unmodified _AFDKHMNL_ 0 0 0 ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB ENSG00000125835|ENST00000381342|SNRPB ENSG00000125835|ENST00000381342|SNRPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2396240234375 2 488.23947 974.464386 0.84282 0.0004115 1.781 0.00086955 2.6238 0.001281 488.2403382389815 34.64 0.19264 30.545 30.457 30.65 -4.0951 18 11 2 0 0 0 0.1875 1 20013 20013 74.929 40.827 1 6318800 484 3892 357 359 519 519 -0.02386728151452644 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5382080078125 3 377.537953 1129.59203 0.79472 0.00030004 0.27721 0.00010466 1.0719 0.0004047 377.53795235089876 49.713 0.29222 49.321 49.178 49.471 -0.3923 38 14 4 0 0 0 0.047196 1 26716 26716 41.956 16.965 1 10855000 485 5603 358 360 520 520 0.032417357142321634 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5379333496094 3 377.537953 1129.59203 0.59626 0.00022511 -0.12499 -4.719E-05 0.47127 0.00017792 377.53786137344 49.37 0.38337 49.326 49.114 49.497 -0.043694 76 18 6 0 0 0 0.047196 2 26615 26615;26719 41.956 27.55 1 186450000 486 5603 358 360 521;522 521 0.032417357142321634 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8040771484375 2 565.803291 1129.59203 0.88704 0.00050189 -0.2209 -0.00012498 0.66614 0.0003769 565.8031551679902 49.37 0.28131 49.326 49.195 49.476 -0.04369 34 13 3 0 0 0 0.0086904 1 26652 26652 107.19 65.347 1 24198000 487 5603 358 360 523 523 0.032417357142321634 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5384826660156 3 377.537953 1129.59203 1.3849 0.00052285 -0.98245 -0.00037091 0.40245 0.00015194 377.5379631114657 54.471 0.72318 48.605 48.158 48.881 -5.8653 104 43 4 0 0 0 0.07916 2 34589 34446;34589 41.956 30.461 1 239560000 488 5603 358 360 524;525 525 0.032417357142321634 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8031616210938 2 565.803291 1129.59203 1.0349 0.00058555 0.77809 0.00044024 1.813 0.0010258 565.8037360174739 54.511 0.43472 48.646 48.401 48.835 -5.8653 66 26 4 0 0 0 0.0094097 1 34649 34649 82.529 36.83 1 88209000 489 5603 358 360 526 526 0.032417357142321634 AFDLAYRKF 9 Unmodified _AFDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.5588989257812 3 377.537953 1129.59203 1.4459 0.00054588 -0.31771 -0.00011995 1.1282 0.00042593 377.53779684318454 59.964 0.51127 53.85 53.796 54.307 -6.1147 36 26 2 0 0 0 0.14017 1 38622 38622 33.445 23.294 1 20660000 490 5603 358 360 527 527 0.032417357142321634 AFDLAYRKFL 10 Unmodified _AFDLAYRKFL_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2328796386719 3 415.232641 1242.67609 0.46885 0.00019468 -0.51728 -0.00021479 -0.04843 -2.011E-05 415.23228234889166 64.885 0.46139 64.885 64.718 65.18 7.6294E-06 56 22 4 0 0 0 0.1552 1 35517 35517 39.213 27.038 1 14701000 491 5603 359 361 528 528 0.06446266811144596 AFDLAYRKFL 10 Unmodified _AFDLAYRKFL_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2332458496094 3 415.232641 1242.67609 1.3996 0.00058116 -0.035071 -1.4562E-05 1.3645 0.0005666 415.23250263742307 89.104 0.45837 82.928 82.669 83.127 -6.1757 57 25 3 0 0 0 0.19566 2 58681 58681;58810 34.222 15.5 1 16749000 492 5603 359 361 529;530 529 0.06446266811144596 AFDLDVVKL 9 Unmodified _AFDLDVVKL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2914123535156 2 510.292225 1018.5699 0.32175 0.00016419 0.15907 8.1174E-05 0.48082 0.00024536 510.29223108646676 77.945 0.35576 77.945 77.771 78.127 0 37 15 3 0 0 0 0.15471 2 43279 43279;43381 27.629 17.445 1 2864700 493 1734 360 362 531;532 531 0.061355112458159056 AFDLDVVKL 9 Unmodified _AFDLDVVKL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2929077148438 2 510.292225 1018.5699 -0.53303 -0.000272 0.52466 0.00026773 -0.0083767 -4.2746E-06 510.2924930098547 78.411 0.46004 77.925 77.705 78.165 -0.48596 74 20 5 0 0 0 0.01958 2 43015 42909;43015 63.961 42.214 1 36886000 494 1734 360 362 533;534 534 0.061355112458159056 AFDLDVVKL 9 Unmodified _AFDLDVVKL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2908325195312 2 510.292225 1018.5699 0.49473 0.00025246 -1.2453 -0.00063546 -0.75055 -0.000383 510.2915618599447 77.848 0.26452 77.9 77.798 78.063 0.052452 20 10 3 0 0 0 0.07087 1 42989 42989 39.95 24.103 1 3149600 495 1734 360 362 535 535 0.061355112458159056 AFDLDVVKL 9 Unmodified _AFDLDVVKL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2931213378906 2 510.292225 1018.5699 0.9118 0.00046529 -1.3042 -0.00066554 -0.39242 -0.00020025 510.29238227272174 91.749 0.92684 85.574 85.059 85.986 -6.1757 94 52 2 0 0 0 0.01958 3 60561 60476;60561;60681 63.961 37.077 1 69537000 496 1734 360 362 536;537;538 537 0.061355112458159056 AFDLKAAVL 9 Unmodified _AFDLKAAVL_ 0 0 0 ENSG00000148218|ENST00000409155|ALAD;nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF ENSG00000148218|ENST00000409155|ALAD ENSG00000148218|ENST00000409155|ALAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2815856933594 2 474.28166 946.548768 0.28983 0.00013746 0.079677 3.7789E-05 0.36951 0.00017525 474.2817412451784 66.458 0.25029 65.975 65.88 66.13 -0.48323 18 11 2 0 0 0 0.078314 1 36288 36288 38.176 11.292 1 1750500 497 5905 361 363 539 539 0.07335545936939525 AFDLSPLQYN 10 Unmodified _AFDLSPLQYN_ 0 0 0 REV__nc|ENSG00000133816|O94851-2|MICAL2 REV__nc|ENSG00000133816|O94851-2|MICAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3004760742188 2 584.287671 1166.56079 1.2259 0.00071628 -0.7853 -0.00045884 0.44061 0.00025744 584.2869797056323 64.572 1.3411 58.397 57.88 59.221 -6.1757 314 73 6 0 0 0 0.54684 1 41592 41592 13.906 2.2658 1 2635600000 + 498 19936 362 364 540 540 -0.015828821105060342 AFDLSQVLF 9 Unmodified _AFDLSQVLF_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2759399414062 2 520.276575 1038.5386 0.24834 0.00012921 -1.3604 -0.00070781 -1.1121 -0.0005786 520.2757608451509 99.928 0.11644 99.77 99.699 99.815 -0.1575 8 3 3 0 0 0 0.047196 1 54570 54570 46.021 15.384 1 8988900 499 2082 363 365 541 541 0.020869382117098212 AFDLTEQRY 9 Unmodified _AFDLTEQRY_ 0 0 0 ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2 ENST00000530992.1_1_17:32364642-32365872:-|nuORF ENST00000530992.1_1_17:32364642-32365872:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7780151367188 2 571.77747 1141.54039 0.1643 9.394E-05 0.47648 0.00027244 0.64078 0.00036638 571.7776935051387 45.389 0.2826 45.389 45.23 45.512 0 48 15 4 0 0 0 0.0044708 2 24694 24691;24694 118.89 68.962 1 143270000 500 5806 364 366 542;543 543 -0.02472052770326627 AFDLTEQRY 9 Unmodified _AFDLTEQRY_ 0 0 0 ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2 ENST00000530992.1_1_17:32364642-32365872:-|nuORF ENST00000530992.1_1_17:32364642-32365872:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7781982421875 2 571.77747 1141.54039 0.22143 0.00012661 -0.11513 -6.5828E-05 0.1063 6.078E-05 571.7774237678577 45.661 0.17525 45.336 45.235 45.41 -0.32425 23 9 3 0 0 0 0.040683 1 24402 24402 49.554 15.153 1 42061000 501 5806 364 366 544 544 -0.02472052770326627 AFDLTEQRY 9 Unmodified _AFDLTEQRY_ 0 0 0 ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2 ENST00000530992.1_1_17:32364642-32365872:-|nuORF ENST00000530992.1_1_17:32364642-32365872:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.7745971679688 2 571.77747 1141.54039 0.94668 0.00054129 0.38204 0.00021844 1.3287 0.00075973 571.7783425714775 51.345 0.25915 45.696 45.622 45.882 -5.649 33 15 3 0 0 0 0.04771 1 32295 32295 57.722 30.093 1 231940000 502 5806 364 366 545 545 -0.02472052770326627 AFDLTKTNM 9 Oxidation (M) _AFDLTKTNM(Oxidation (M))_ AFDLTKTNM(1) AFDLTKTNM(69) 0 0 1 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;nc|ENSG00000110583|Q86UY6-4|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.75537109375 2 528.755149 1055.49575 -0.16354 -8.6472E-05 0.43774 0.00023146 0.2742 0.00014499 528.7556132753767 33.277 0.37188 33.277 33.109 33.481 0 57 19 5 0 0 0 0.014417 1 17402 17402 69.105 28.656 1 18123000 503 2726 365 367 546 546 474 -0.029781999080114474 AFDLTKTNM 9 Oxidation (M) _AFDLTKTNM(Oxidation (M))_ AFDLTKTNM(1) AFDLTKTNM(120) 0 0 1 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;nc|ENSG00000110583|Q86UY6-4|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7557373046875 2 528.755149 1055.49575 -0.32929 -0.00017412 0.86143 0.00045548 0.53213 0.00028137 528.7557207905509 33.353 0.34096 33.194 33.028 33.369 -0.15918 43 13 4 0 0 0 0.0036082 2 17362 17362;17461 123.45 83.002 1 13519000 504 2726 365 367 547;548 547 474 -0.029781999080114474 AFDLTKTNM 9 Oxidation (M) _AFDLTKTNM(Oxidation (M))_ AFDLTKTNM(1) AFDLTKTNM(100) 0 0 1 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;nc|ENSG00000110583|Q86UY6-4|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7550659179688 2 528.755149 1055.49575 1.0715 0.00056657 -1.8327 -0.00096905 -0.76118 -0.00040248 528.7542363759945 38.019 0.66278 33.65 33.237 33.9 -4.3689 85 39 3 0 0 0 0.0085164 2 22387 22259;22387 99.799 71.312 1 54371000 505 2726 365 367 549;550 550 474 -0.029781999080114474 AFDLTKTNM 9 Unmodified _AFDLTKTNM_ 0 0 0 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;nc|ENSG00000110583|Q86UY6-4|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7569580078125 2 520.757692 1039.50083 NaN NaN NaN NaN NaN NaN NaN 45.613 1 45.289 44.789 45.789 -0.32425 0 0 0 0.076083 1 24376 24376 49.554 18.918 1 506 2726 365 368 551 551 -0.017338960454026164 AFDLTKTNM 9 Unmodified _AFDLTKTNM_ 0 0 0 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;nc|ENSG00000110583|Q86UY6-4|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7579956054688 2 520.757692 1039.50083 0.70304 0.00036611 0.54048 0.00028146 1.2435 0.00064757 520.7582077087959 51.617 0.45029 45.968 45.771 46.222 -5.649 63 28 3 0 0 0 0.00044362 2 32421 32421;32553 145.13 99.43 1 99096000 507 2726 365 368 552;553 552 -0.017338960454026164 AFDLVNIHL 9 Unmodified _AFDLVNIHL_ 0 0 0 ENSG00000068383|ENST00000368594|INPP5A;ENST00000487614.1_1_10:134511381-134540457:+|nuORF ENSG00000068383|ENST00000368594|INPP5A ENSG00000068383|ENST00000368594|INPP5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2891235351562 2 521.290017 1040.56548 0.42599 0.00022207 -3.6918 -0.0019245 -3.2658 -0.0017024 521.2881128682496 83.697 0.21526 83.2 83.099 83.315 -0.49751 20 8 3 0 0 0 0.1773 1 45822 45822 25.399 15.325 1 706390 508 978 366 369 554 554 0.0468204682290434 AFDNMVTSM 9 2 Oxidation (M) _AFDNM(Oxidation (M))VTSM(Oxidation (M))_ AFDNM(1)VTSM(1) AFDNM(64)VTSM(64) 0 0 2 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2086791992188 2 524.209718 1046.40488 -0.31154 -0.00016331 -0.34483 -0.00018076 -0.65637 -0.00034407 524.2099044192911 27.764 0.35139 27.764 27.552 27.903 0 60 16 5 0 0 0 0.019303 2 14255 14255;14354 64.236 47.294 1 25665000 509 7619;15408 367 370 555;556 555 1301;1302 -0.11646411947799606 AFDNMVTSM 9 2 Oxidation (M) _AFDNM(Oxidation (M))VTSM(Oxidation (M))_ AFDNM(1)VTSM(1) AFDNM(57)VTSM(57) 0 0 2 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2101440429688 2 524.209718 1046.40488 -0.35045 -0.00018371 -0.88241 -0.00046257 -1.2329 -0.00064628 524.2095636824615 28.046 0.38668 28.046 27.884 28.271 0 59 22 3 0 0 0 0.026094 1 14546 14546 57.471 44.94 1 22883000 510 7619;15408 367 370 557 557 1301;1302 -0.11646411947799606 AFDNMVTSM 9 2 Oxidation (M) _AFDNM(Oxidation (M))VTSM(Oxidation (M))_ AFDNM(1)VTSM(1) AFDNM(44)VTSM(44) 0 0 2 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2098999023438 2 524.209718 1046.40488 NaN NaN NaN NaN NaN NaN NaN 27.824 1 27.777 27.277 28.277 -0.046408 0 0 0 0.096036 1 14349 14349 44.407 31.875 1 511 7619;15408 367 370 558 558 1301;1302 -0.11646411947799606 AFDNMVTSM 9 2 Oxidation (M) _AFDNM(Oxidation (M))VTSM(Oxidation (M))_ AFDNM(1)VTSM(1) AFDNM(55)VTSM(55) 0 0 2 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2096557617188 2 524.209718 1046.40488 0.54509 0.00028574 -0.53633 -0.00028115 0.0087595 4.5918E-06 524.2096104271188 32.95 0.38727 29.093 28.854 29.241 -3.8562 40 23 3 0 0 0 0.031062 1 18765 18765 54.774 42.242 1 40478000 512 7619;15408 367 370 559 559 1301;1302 -0.11646411947799606 AFDNMVTSM 9 Unmodified _AFDNMVTSM_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000563514.1_1_16:88926246-88927364:+|nuORF;ENST00000565205.5_1_16:88925858-88927364:+|nuORF;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L;ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2146911621094 2 508.214803 1014.41505 0.62703 0.00031867 -0.66035 -0.0003356 -0.033316 -1.6932E-05 508.21462059818896 67.081 0.53645 60.905 60.681 61.217 -6.1757 73 29 3 0 0 0 0.047196 2 43605 43605;43740 46.021 26.582 1 93645000 513 7619;15408 367 371 560;561 560 -0.09157804222570576 AFDNVLNYI 9 Unmodified _AFDNVLNYI_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7719116210938 2 534.771657 1067.52876 NaN NaN NaN NaN NaN NaN NaN 90.273 1 89.771 89.271 90.271 -0.50171 0 0 0 0.50124 1 49346 49346 15.847 5.7733 1 514 8311 368 372 562 562 -0.0023024979368528875 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4996337890625 1 964.498589 963.491313 -0.088186 -8.5055E-05 0.66122 0.00063775 0.57303 0.00055269 964.4992802962893 71.631 0.33522 71.631 71.505 71.84 0 42 14 4 0 0 0 0.0090851 2 39859 39859;39960 85.357 40.95 1 5755600 515 9188 369 373 563;564 563 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7534484863281 2 482.752933 963.491313 0.012183 5.8812E-06 0.16239 7.8393E-05 0.17457 8.4274E-05 482.75296552889307 71.681 0.39848 71.681 71.442 71.84 0 51 17 4 0 0 0 0.12841 1 39860 39860 30.225 9.3536 1 5119200 516 9188 369 373 565 565 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 964.4990234375 1 964.498589 963.491313 0.48224 0.00046512 -0.06033 -5.8188E-05 0.42191 0.00040693 964.498390128821 72.13 0.46357 71.654 71.415 71.878 -0.47609 66 19 4 0 0 0 0.0090851 2 39484 39387;39484 85.357 33.577 1 29920000 517 9188 369 373 566;567 567 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7533569335938 2 482.752933 963.491313 0.68993 0.00033306 -0.29744 -0.00014359 0.39249 0.00018947 482.7527954550674 72.129 0.46357 71.653 71.415 71.878 -0.47609 67 19 4 0 0 0 0.087258 2 39407 39407;39510 36.044 11.37 1 15941000 518 9188 369 373 568;569 568 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 964.5009765625 1 964.498589 963.491313 1.0205 0.0009843 -0.1268 -0.0001223 0.89373 0.000862 964.4981295331339 71.621 0.27452 71.66 71.535 71.809 0.039024 22 12 2 0 0 0 0.14602 2 39390 39390;39497 28.487 5.8719 1 1748300 519 9188 369 373 570;571 570 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.4994506835938 1 964.498589 963.491313 0.70313 0.00067817 0.32661 0.00031502 1.0297 0.00099319 964.4989269503294 80.291 0.51321 74.115 73.878 74.391 -6.1757 73 29 3 0 0 0 0.0088975 3 52670 52543;52670;52792 104.8 53.944 1 104790000 520 9188 369 373 572;573;574 573 0.008106589407248066 AFDPTSTLL 9 Unmodified _AFDPTSTLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7533264160156 2 482.752933 963.491313 0.90534 0.00043706 0.057288 2.7656E-05 0.96263 0.00046471 482.75288742022764 80.284 0.58517 74.108 73.806 74.391 -6.1757 106 33 4 0 0 0 0.078417 1 52660 52660 38.151 13.477 1 211110000 521 9188 369 373 575 575 0.008106589407248066 AFDRCATL 8 Carbamidomethyl (C) _AFDRC(Carbamidomethyl (C))ATL_ AFDRC(1)ATL AFDRC(76)ATL 0 1 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2297973632812 2 477.229102 952.443651 1.2565 0.00059962 -0.34179 -0.00016311 0.91468 0.00043651 477.2291023729734 37.155 0.40711 32.872 32.665 33.072 -4.2835 55 24 3 0 0 0 0.18544 2 21745 21745;21869 75.761 14.403 1 29634000 522 402 370 374 576;577 576 20 -0.03447318531129895 AFDVAEKYL 9 Unmodified _AFDVAEKYL_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2755126953125 2 528.274032 1054.53351 0.59835 0.00031609 -0.053636 -2.8335E-05 0.54471 0.00028776 528.2740379157747 57.958 0.33043 57.958 57.772 58.103 0 22 13 2 0 0 0 0.085319 1 32254 32254 36.506 11.107 1 2959700 523 16049 371 375 578 578 0.008426343491009902 AFDVAEKYL 9 Unmodified _AFDVAEKYL_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.274169921875 2 528.274032 1054.53351 0.18404 9.7225E-05 0.045372 2.3969E-05 0.22942 0.00012119 528.2738431391823 58.515 0.27035 58.024 57.883 58.153 -0.49079 21 12 2 0 0 0 0.14 1 31815 31815 29.082 12.139 1 2778700 524 16049 371 375 579 579 0.008426343491009902 AFDVAEREF 9 Unmodified _AFDVAEREF_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2589721679688 2 542.258914 1082.50327 -0.022532 -1.2218E-05 -0.64237 -0.00034833 -0.6649 -0.00036055 542.258484674655 48.97 0.4387 48.97 48.736 49.174 0 78 20 5 0 0 0 0.010301 2 26846 26846;26967 79.596 54.197 1 235570000 525 4535 372 376 580;581 580 -0.034677243161013394 AFDVAEREF 9 Unmodified _AFDVAEREF_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.25927734375 2 542.258914 1082.50327 0.38327 0.00020783 1.0482 0.00056839 1.4315 0.00077622 542.2593066738324 49.318 0.2826 48.946 48.778 49.06 -0.37172 31 13 3 0 0 0 0.029718 1 26513 26513 55.503 24.234 1 8956700 526 4535 372 376 582 582 -0.034677243161013394 AFDVAEREF 9 Unmodified _AFDVAEREF_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2593994140625 2 542.258914 1082.50327 1.0144 0.00055005 -0.43422 -0.00023546 0.58016 0.0003146 542.2586424274673 55.214 0.52899 49.293 49.031 49.56 -5.9211 108 32 4 0 0 0 0.0085366 3 35134 34996;35134;35270 90.135 64.736 1 373560000 527 4535 372 376 583;584;585 584 -0.034677243161013394 AFDVEIHM 8 Unmodified _AFDVEIHM_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2258911132812 2 481.226028 960.437503 0.8412 0.00040481 -1.3897 -0.00066874 -0.54845 -0.00026393 481.2254166394493 67.348 0.47962 61.172 60.981 61.46 -6.1757 34 26 2 0 0 0 0.46494 1 44035 44035 38.151 24.643 1 12006000 528 8162 373 377 586 586 -0.04429836762653849 AFDVHLNAF 9 Unmodified _AFDVHLNAF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.743408203125 2 517.258717 1032.50288 0.50646 0.00026197 0.57971 0.00029986 1.0862 0.00056183 517.2589745932403 66.669 0.2401 66.669 66.576 66.816 0 13 10 2 0 0 0 0.18882 1 37161 37161 15.847 4.7327 1 2115000 529 3125 374 378 587 587 -0.012070992453118379 AFDVHLNAF 9 Unmodified _AFDVHLNAF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2581176757812 2 517.258717 1032.50288 0.3135 0.00016216 0.55682 0.00028802 0.87033 0.00045018 517.2582072112261 67.169 0.38909 66.687 66.525 66.914 -0.48218 44 17 4 0 0 0 0.011968 2 36752 36646;36752 74.929 40.827 1 28101000 530 3125 374 378 588;589 589 -0.012070992453118379 AFDVHLNAF 9 Unmodified _AFDVHLNAF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MSMS AL20221201_MKP_PDAC_01 4 517.26025390625 2 517.258717 1032.50288 NaN NaN NaN NaN NaN NaN NaN 74.105 1 67.929 67.429 68.429 -6.1757 0 0 0 0.030047 1 48451 48451 66.457 37.97 1 531 3125 374 378 590 590 -0.012070992453118379 AFDVHLNAF 9 Unmodified _AFDVHLNAF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MSMS AL20221201_MKP_PDAC_01 4 517.2603149414062 2 517.258717 1032.50288 NaN NaN NaN NaN NaN NaN NaN 74.319 1 68.144 67.644 68.644 -6.1757 0 0 0 0.035688 1 48588 48588 63.961 31.655 1 532 3125 374 378 591 591 -0.012070992453118379 AFDVHLNAF 9 Unmodified _AFDVHLNAF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MSMS AL20221201_MKP_PDAC_01 4 517.2592163085938 2 517.258717 1032.50288 NaN NaN NaN NaN NaN NaN NaN 75.052 1 68.876 68.376 69.376 -6.1757 0 0 0 0.059498 1 49075 49075 53.833 28.433 1 533 3125 374 378 592 592 -0.012070992453118379 AFDVVERSF 9 Unmodified _AFDVVERSF_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.1804809570312 2 535.269281 1068.52401 0.55511 0.00029713 -4.4689 -0.0023921 -3.9138 -0.0020949 535.2671169207194 53.475 0.12704 53.475 53.42 53.547 0 9 5 2 0 0 0 0.16102 1 29674 29674 28.495 10.348 1 2428200 534 1794 375 379 593 593 -0.007511339364327796 AFDVVERSFL 10 Unmodified _AFDVVERSFL_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.811279296875 2 591.811313 1181.60807 0.46109 0.00027288 0.56324 0.00033333 1.0243 0.00060621 591.8113295824874 70.942 0.3277 70.465 70.308 70.636 -0.47735 43 14 4 0 0 0 0.095172 2 38788 38788;38890 47.732 27.317 1 8060600 535 1794 376 380 594;595 594 0.024533971604796534 AFDVVERSFL 10 Unmodified _AFDVVERSFL_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 591.811313 1181.60807 -0.14912 -8.8252E-05 2.8393 0.0016803 2.6902 0.0015921 592.3148310070301 70.51 0.18759 70.51 70.377 70.565 0 0.053651 0.0024584 NaN 47.732 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 421400 536 1794 376 380 0.024533971604796534 AFDVVERSFL 10 Unmodified _AFDVVERSFL_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 591.811313 1181.60807 0.5319 0.00031478 -0.70765 -0.0004188 -0.17576 -0.00010402 591.811470304697 70.359 0.26931 70.395 70.234 70.503 0.035507 -0.061915 -0.0017399 NaN 47.732 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1186700 537 1794 376 380 0.024533971604796534 AFDVVGCLLVF 11 Unmodified _AFDVVGCLLVF_ 0 0 0 REV__nc|ENSG00000154639|P78310-3|CXADR REV__nc|ENSG00000154639|P78310-3|CXADR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.8128051757812 2 591.81501 1181.61547 -0.14912 -8.8252E-05 -3.4072 -0.0020165 -3.5564 -0.0021047 592.3148310070301 70.51 0.18759 70.51 70.377 70.565 0 10 7 2 0 0 0 0.52864 1 39290 39290 25.399 10.994 1 421400 + 538 21236 377 381 596 596 0.031924134365226564 AFECPECGQTF 11 Unmodified _AFECPECGQTF_ 0 0 0 ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707 ENST00000527561.5_1_8:144766681-144776697:+|nuORF ENST00000527561.5_1_8:144766681-144776697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2423095703125 2 616.241549 1230.46855 0.54229 0.00033418 -0.44464 -0.000274 0.097648 6.0175E-05 616.241499457374 55.582 0.33572 55.104 54.964 55.3 -0.47798 50 15 4 0 0 0 0.70701 1 30245 30245 3.5965 0.31518 1 10238000 539 8953 378 382 597 597 -0.13747051510722486 AFEDEEEED 9 Unmodified _AFEDEEEED_ 0 0 0 ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2005004882812 2 556.698748 1111.38294 0.59777 0.00033278 0.49227 0.00027405 1.09 0.00060683 556.699126565366 68.002 0.27319 68.002 67.851 68.124 0 24 13 2 0 0 0 0.58466 1 37901 37901 2.3027 0 1 1692200 540 10338 379 383 598 598 -0.16829221891043744 AFEDEEEED 9 Unmodified _AFEDEEEED_ 0 0 0 ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.69873046875 2 556.698748 1111.38294 0.58314 0.00032463 -0.1739 -9.6808E-05 0.40924 0.00022783 556.6985553989106 68.582 0.3434 68.101 67.943 68.286 -0.48071 59 15 5 0 0 0 0.58466 1 37477 37477 2.3027 1.5091 1 11012000 541 10338 379 383 599 599 -0.16829221891043744 AFEDEEEED 9 Unmodified _AFEDEEEED_ 0 0 0 ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B ENSG00000204950|ENST00000378075|LRRC10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.69970703125 2 556.698748 1111.38294 0.89846 0.00050017 0.42222 0.00023505 1.3207 0.00073522 556.6990621485173 75.96 0.50234 69.784 69.521 70.023 -6.1757 77 26 4 0 0 0 0.58466 1 49665 49665 2.3027 0 1 26312000 542 10338 379 383 600 600 -0.16829221891043744 AFEDSDDGDF 10 Unmodified _AFEDSDDGDF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380294-6381826:-|nuORF ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.200439453125 2 559.201458 1116.38836 NaN NaN NaN NaN NaN NaN NaN 68.657 1 68.176 67.676 68.676 -0.48071 0 0 0 0.96627 1 37526 37526 4.3292 2.0265 1 543 3867 380 384 601 601 -0.16517498308553513 AFEELFGI 8 Unmodified _AFEELFGI_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 925.4674682617188 1 925.466561 924.459284 0.39008 0.00036101 0.23585 0.00021827 0.62593 0.00057928 925.4667181863545 83.869 0.31144 83.369 83.217 83.528 -0.49961 19 12 2 0 0 0 0.74163 1 45883 45883 13.508 0 1 929830 544 851 381 385 602 602 -0.005967087424210149 AFEENLWL 8 Unmodified _AFEENLWL_ 0 0 0 REV__ENPEP|p.G417E|1|0.18|ENSG00000138792|chr4:110510300-110510300|G/A|missense_variant REV__ENPEP|p.G417E|1|0.18|ENSG00000138792|chr4:110510300-110510300|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2532958984375 2 511.2531 1020.49165 0.25203 0.00012885 -0.14341 -7.3321E-05 0.10862 5.5532E-05 511.25299373443755 91.642 0.38927 91.161 90.962 91.351 -0.48092 58 25 3 0 0 0 0.75262 1 50136 50136 12.532 4.6214 1 2594600 + 545 16922 382 386 603 603 -0.01777921339430577 AFELYSGS 8 Unmodified _AFELYSGS_ 0 0 0 nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF;nc|ENSG00000134369|Q8NEY1-6|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.4012451171875 1 873.398875 872.391599 0.14033 0.00012257 -0.76048 -0.0006642 -0.62014 -0.00054163 873.3987708413989 58.744 0.23329 58.744 58.535 58.768 0 14 9 2 0 0 0 0.5284 1 32669 32669 32.117 8.9685 1 826130 546 4601 383 387 604 604 -0.04970158673222613 AFEVAEKY 8 Unmodified _AFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7408752441406 2 478.739825 955.465098 0.35232 0.00016867 0.75268 0.00036034 1.105 0.00052901 478.7401197364758 37.154 0.21992 37.154 37.018 37.238 0 16 10 2 0 0 0 0.40602 1 19738 19738 43.858 15.371 1 1608100 547 4211;10744 384 388 605 605 -0.014416102307677647 AFFDQVISNN 10 Unmodified _AFFDQVISNN_ 0 0 0 REV__ENSG00000176928|ENST00000652361|GCNT4 REV__ENSG00000176928|ENST00000652361|GCNT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.779296875 2 577.77747 1153.54039 1.5253 0.00088126 -0.90289 -0.00052167 0.62237 0.00035959 577.7768477758767 98.195 0.30077 92.019 91.847 92.148 -6.1757 60 19 4 0 0 0 0.46077 1 65179 65179 18.373 1.2602 1 90566000 + 548 22952 385 389 606 606 -0.030240527703199405 AFFEGPPFKF 10 Unmodified _AFFEGPPFKF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.3050537109375 2 593.800217 1185.58588 1.1911 0.00070729 3.6825 0.0021867 4.8736 0.002894 593.8028041354224 98.161 0.10466 91.985 91.952 92.057 -6.1757 15 6 3 0 0 0 0.093652 1 65105 65105 63.961 31.844 1 26590000 549 1052 386 390 607 607 0.0005121748270084936 AFFGDVVLRF 10 Unmodified _AFFGDVVLRF_ 0 0 0 ENSG00000100147|ENST00000255784|CCDC134 ENSG00000100147|ENST00000255784|CCDC134 ENSG00000100147|ENST00000255784|CCDC134 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8187255859375 2 585.818941 1169.62333 1.8702 0.0010956 -2.3448 -0.0013736 -0.47464 -0.00027805 585.8171527902489 92.698 0.41051 92.728 92.494 92.905 0.030197 27 15 3 0 0 0 0.17714 1 51552 51552 36.506 19.393 1 3631500 550 1760 387 391 608 608 0.04530308748326206 AFFPFGVWLH 10 Unmodified _AFFPFGVWLH_ 0 0 0 REV__nc|ENSG00000273085|Q8NGJ3|OR52E1 REV__nc|ENSG00000273085|Q8NGJ3|OR52E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8179931640625 2 610.816202 1219.61785 1.0951 0.00066891 0.77909 0.00047588 1.8742 0.0011448 610.8168488582819 20.697 0.50042 18.004 17.685 18.186 -2.693 53 30 2 0 0 0 0.70951 1 11136 11136 1.8442 0 1 2997800 + 551 30001 388 392 609 609 0.01682629956508208 AFFPKHQDLQF 11 Unmodified _AFFPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2385559082031 3 459.903183 1376.68772 1.3832 0.00063616 0.57534 0.0002646 1.9586 0.00090076 459.9029834844749 79.592 0.24944 73.416 73.286 73.535 -6.1757 23 14 2 0 0 0 0.50515 1 52109 52109 12.856 4.5695 1 13111000 552 10196 389 393 610 610 0.014444638344457417 AFFPKHQDLQF 11 Unmodified _AFFPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MSMS AL20221201_MKP_PDAC_01 4 460.2384643554688 3 459.903183 1376.68772 NaN NaN NaN NaN NaN NaN NaN 79.748 1 73.573 73.073 74.073 -6.1757 0 0 0 0.73356 1 52282 52282 8.7518 4.3456 1 553 10196 389 393 611 611 0.014444638344457417 AFFRMKELFF 10 Unmodified _AFFRMKELFF_ 0 0 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.9024658203125 3 445.902126 1334.68455 0.5904 0.00026326 0.76417 0.00034075 1.3546 0.00060401 445.9021326637638 99.65 0.077225 93.475 93.448 93.525 -6.1757 8 4 2 0 0 0 0.23548 1 66463 66463 27.088 15.457 1 15566000 554 6392 390 394 612 612 0.030594974560926858 AFGESYLIL 9 Unmodified _AFGESYLIL_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7714233398438 2 506.771126 1011.5277 0.076274 3.8654E-05 0.92957 0.00047108 1.0058 0.00050973 506.7713481408471 90.779 0.4771 90.285 90.051 90.528 -0.49457 84 32 3 0 0 0 0.30562 1 49537 49537 16.942 2.104 1 16228000 + 555 23262 391 395 613 613 0.022395358374410534 AFGGLDDLCNP 11 Unmodified _AFGGLDDLCNP_ 0 0 0 REV__ENSG00000176435|ENST00000342213|CLEC14A REV__ENSG00000176435|ENST00000342213|CLEC14A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.249755859375 2 561.250231 1120.48591 NaN NaN NaN NaN NaN NaN NaN 21.63 1 21.63 21.13 22.13 0 0 0 0 0.94165 1 10958 10958 1.3295 0.5359 1 + 556 22929 392 396 614 614 -0.06951387913409235 AFGGLSYASL 10 Unmodified _AFGGLSYASL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.253173828125 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 72.055 1 71.579 71.079 72.079 -0.47609 0 0 0 0.71851 1 39432 39432 15.847 1.2655 1 + 557 22751 393 397 615 615 -0.0012192133942789951 AFGGLWPPRR 10 Unmodified _AFGGLWPPRR_ 0 0 0 ENST00000564501.5_1_16:23568572-23568743:-|nuORF ENST00000564501.5_1_16:23568572-23568743:-|nuORF ENST00000564501.5_1_16:23568572-23568743:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8746948242188 3 386.217325 1155.63015 0.74628 0.00028823 1.7062 0.00065897 2.4525 0.00094719 386.2181354928245 52.552 0.21842 52.493 52.328 52.546 -0.058918 16 10 2 0 0 0 0.23922 1 28500 28500 1.9064 0 1 2176200 558 15385 394 398 616 616 0.05855666419552108 AFGLVERFSF 10 Unmodified _AFGLVERFSF_ 0 0 0 REV__ENSG00000071203|ENST00000016913|MS4A12 REV__ENSG00000071203|ENST00000016913|MS4A12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.8072509765625 2 586.808574 1171.60259 NaN NaN NaN NaN NaN NaN NaN 42.368 1 42.368 41.868 42.868 0 0 0 0 0.90096 1 22931 22931 7.9102 0 1 + 559 17492 395 399 617 617 0.023657183686509597 AFHPDPTRL 9 Unmodified _AFHPDPTRL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.854736328125 3 351.854053 1052.54033 -0.36517 -0.00012849 1.4513 0.00051064 1.0861 0.00038215 351.8546457842052 35.062 0.2917 34.84 34.646 34.938 -0.2224 16 12 2 0 0 0 0.15471 1 18316 18316 26.021 21.124 1 1728900 560 9188 396 400 618 618 0.016159920203108413 AFHPDPTRL 9 Unmodified _AFHPDPTRL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.854248046875 3 351.854053 1052.54033 1.5924 0.00056028 0.27532 9.6873E-05 1.8677 0.00065715 351.85413220593466 39.239 0.36394 34.788 34.616 34.98 -4.4509 31 22 2 0 0 0 0.024882 1 23253 23253 53.404 36.291 1 10017000 561 9188 396 400 619 619 0.016159920203108413 AFHPHWPHL 9 Unmodified _AFHPHWPHL_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7532958984375 2 571.288143 1140.56173 0.076955 4.3963E-05 -0.78557 -0.00044879 -0.70862 -0.00040482 571.2883112101608 69.539 0.34263 69.06 68.925 69.267 -0.47903 22 14 2 0 0 0 0.203 1 38102 38102 9.3474 5.0182 1 762810 562 5353 397 401 620 620 -0.002925781602925781 AFHPTAQLL 9 Unmodified _AFHPTAQLL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2767333984375 2 499.276909 996.539266 0.26324 0.00013143 -0.027291 -1.3626E-05 0.23595 0.0001178 499.276880618945 52.711 0.27853 52.259 52.102 52.381 -0.45173 24 13 3 0 0 0 0.042911 1 28483 28483 48.346 3.9388 1 2719200 563 2723 398 402 621 621 0.04085777651414446 AFHPTAQLL 9 Unmodified _AFHPTAQLL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2775573730469 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 52.406 1 52.347 51.847 52.847 -0.058918 0 0 0 0.29524 1 28389 28389 25.399 2.2509 1 564 2723 398 402 622 622 0.04085777651414446 AFHRDCEF 8 Unmodified _AFHRDCEF_ 0 0 0 ENST00000403226.1_1_7:3180726-3198093:-|nuORF ENST00000403226.1_1_7:3180726-3198093:-|nuORF ENST00000403226.1_1_7:3180726-3198093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7210083007812 2 512.718901 1023.42325 0.31952 0.00016382 1.5443 0.00079179 1.8638 0.00095562 512.7197239588852 72.506 0.30556 72.506 72.28 72.585 0 30 11 4 0 0 0 0.80676 1 40333 40333 2.5775 0 1 790970 565 12904 399 403 623 623 -0.0875248919094247 AFHRPPYHLL 10 Unmodified _AFHRPPYHLL_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5646362304688 3 417.564614 1249.67201 -0.0052759 -2.203E-06 0.038831 1.6215E-05 0.033555 1.4012E-05 417.5646820372242 38.347 0.45359 38.364 38.09 38.544 0.01704 64 20 4 0 0 0 0.051739 2 20401 20306;20401 55.503 43.328 1 13901000 566 635 400 404 624;625 625 0.057162221080716336 AFHRPPYHLL 10 Unmodified _AFHRPPYHLL_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000576972.5_1_16:67914666-67915321:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.5648803710938 3 417.564614 1249.67201 1.1475 0.00047914 1.1553 0.00048242 2.3028 0.00096156 417.5644813396458 84.139 0.56093 77.964 77.645 78.206 -6.1757 70 30 4 0 0 0 0.024981 1 55319 55319 59.368 50.617 1 15493000 567 635 400 404 626 626 0.057162221080716336 AFHYLHECIGL 11 Unmodified _AFHYLHECIGL_ 0 0 0 ENST00000376566.8_1_X:48755271-48755857:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF ENST00000376566.8_1_X:48755271-48755857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8834533691406 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 34.188 1 33.997 33.497 34.497 -0.19131 0 0 0 0.93893 1 17847 17847 2.8433 0 1 568 12503 401 405 627 627 -0.016068539630396117 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5385131835938 3 393.537953 1177.59203 0.49507 0.00019483 0.28329 0.00011149 0.77836 0.00030632 393.5380694178852 53.603 0.1766 53.151 53.065 53.242 -0.45173 15 8 2 0 0 0 0.13231 1 29027 29027 29.841 19.69 1 1600500 569 6008 402 406 628 628 0.010337357142361725 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5381469726562 3 393.537953 1177.59203 -0.023458 -9.2317E-06 0.85168 0.00033517 0.82822 0.00032594 393.5382565223208 53.189 0.32477 53.126 52.981 53.306 -0.063423 56 15 5 0 0 0 0.069655 2 28823 28823;28927 40.239 30.695 1 31948000 570 6008 402 406 629;630 629 0.010337357142361725 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8002319335938 2 589.803291 1177.59203 0.11905 7.0216E-05 -0.67615 -0.0003988 -0.5571 -0.00032858 589.8025452471254 53.189 0.30368 53.126 53.002 53.306 -0.063423 33 14 3 0 0 0 0.0083595 1 28829 28829 106.94 86.487 1 13321000 571 6008 402 406 631 631 0.010337357142361725 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5382080078125 3 393.537953 1177.59203 1.66 0.00065326 -0.10651 -4.1916E-05 1.5535 0.00061134 393.53820649561817 58.637 0.29853 52.562 52.403 52.702 -6.0745 34 16 3 0 0 0 0.15882 1 37611 37611 27.223 27.223 1 12733000 572 6008 402 406 632 632 0.010337357142361725 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5388488769531 3 393.537953 1177.59203 0.91652 0.00036068 0.12503 4.9202E-05 1.0415 0.00040989 393.53803565509935 80.631 0.56709 74.455 74.278 74.845 -6.1757 75 30 3 0 0 0 0.044296 3 52860 52860;52975;53100 47.594 33.98 1 54255000 573 6008 402 406 633;634;635 633 0.010337357142361725 AFIEKHWTF 9 Unmodified _AFIEKHWTF_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MSMS AL20221201_MKP_PDAC_01 4 589.8031005859375 2 589.803291 1177.59203 NaN NaN NaN NaN NaN NaN NaN 80.652 1 74.476 73.976 74.976 -6.1757 0 0 0 0.015528 1 52919 52919 92.653 58.551 1 574 6008 402 406 636 636 0.010337357142361725 AFIKAETPWLF 11 Unmodified _AFIKAETPWLF_ 0 0 0 ENST00000580048.1_1_18:72264114-72264453:-|nuORF ENST00000580048.1_1_18:72264114-72264453:-|nuORF ENST00000580048.1_1_18:72264114-72264453:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.8603515625 2 661.860806 1321.70706 0.46611 0.0003085 -0.29585 -0.00019581 0.17025 0.00011268 661.8606538055931 99.163 0.10495 92.988 92.923 93.028 -6.1757 9 5 2 0 0 0 0.00063278 1 65966 65966 87.258 50.752 1 28570000 575 15556 403 407 637 637 0.05907420125367935 AFIKIKMAF 9 Unmodified _AFIKIKMAF_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8802185058594 3 356.880663 1067.62016 1.2767 0.00045562 0.12416 4.4311E-05 1.4008 0.00049993 356.8805905151413 92.758 0.24023 86.582 86.431 86.671 -6.1757 30 14 3 0 0 0 0.078314 1 61305 61305 38.176 25.935 1 42111000 576 7241 404 408 638 638 0.08905342369962455 AFIKKCKVL 9 Unmodified _AFIKKCKVL_ 0 0 0 REV__ENSG00000117000|ENST00000372771|RLF REV__ENSG00000117000|ENST00000372771|RLF MSMS AL20221201_MKP_PDAC_01 4 350.55810546875 3 350.556179 1048.64671 NaN NaN NaN NaN NaN NaN NaN 18.974 1 16.352 15.852 16.852 -2.6215 0 0 0 0.81228 1 10023 10023 5.7319 1.4026 1 + 577 19079 405 409 639 639 0.12433031261298311 AFIKRTPVI 9 Unmodified _AFIKRTPVI_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8321533203125 2 522.831852 1043.64915 0.050037 2.6161E-05 -0.78764 -0.0004118 -0.7376 -0.00038564 522.8316848185423 38.468 0.22794 38.485 38.355 38.583 0.01704 22 10 3 0 0 0 0.025842 1 20444 20444 57.722 27.497 1 3730900 578 9907 406 410 640 640 0.12907202990618316 AFIPAIDSF 9 Unmodified _AFIPAIDSF_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7583618164062 2 490.758018 979.501483 0.62587 0.00030715 0.0066538 3.2654E-06 0.63253 0.00031042 490.7581619305157 88.722 0.25587 88.217 88.091 88.347 -0.50423 14 10 2 0 0 0 0.48152 1 48518 48518 8.5933 2.2392 1 364340 579 2616 407 411 641 641 0.010912666659578463 AFIPIPYGIR 10 Unmodified _AFIPIPYGIR_ 0 0 0 REV__ENSG00000165646|ENST00000644641|SLC18A2 REV__ENSG00000165646|ENST00000644641|SLC18A2 MSMS AL20221201_MKP_PDAC_01 4 573.8385009765625 2 573.837134 1145.65972 NaN NaN NaN NaN NaN NaN NaN 98.267 1 92.091 91.591 92.591 -6.1757 0 0 0 0.38297 1 65162 65162 32.305 5.4218 1 + 580 22031 408 412 642 642 0.09271185645025071 AFIQKSDLF 9 Unmodified _AFIQKSDLF_ 0 0 0 nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7890625 2 534.78985 1067.56515 0.31449 0.00016819 0.45254 0.00024201 0.76703 0.0004102 534.7903106116377 57.903 0.59332 57.413 56.984 57.577 -0.48974 52 28 3 0 0 0 0.03568 1 31457 31457 52.268 19.963 1 9761800 581 3987 409 413 643 643 0.034066271030496864 AFIQKSDLF 9 Unmodified _AFIQKSDLF_ 0 0 0 nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7901000976562 2 534.78985 1067.56515 0.78363 0.00041908 0.84597 0.00045242 1.6296 0.0008715 534.7901397385772 57.547 0.27443 57.481 57.319 57.593 -0.066036 36 13 4 0 0 0 0.08691 2 31289 31289;31389 36.127 9.2434 1 6514700 582 3987 409 413 644;645 644 0.034066271030496864 AFIQKSDLF 9 Unmodified _AFIQKSDLF_ 0 0 0 nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.78985 1067.56515 0.54419 0.00029103 -0.96095 -0.00051391 -0.41676 -0.00022288 534.7894360247222 57.076 0.25517 57.076 56.9 57.156 0 -0.24744 -0.0015516 NaN 52.268 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1006600 583 3987 409 413 0.034066271030496864 AFIQKSNLI 9 Unmodified _AFIQKSNLI_ 0 0 0 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3058471679688 2 517.305667 1032.59678 0.74195 0.00038382 -0.059212 -3.0631E-05 0.68274 0.00035319 517.3056742610546 49.421 0.24113 49.374 49.232 49.473 -0.046642 26 11 3 0 0 0 0.0036082 1 26689 26689 123.45 48.522 1 4835500 584 7646 410 414 646 646 0.08178619856994374 AFIQKSNLI 9 Unmodified _AFIQKSNLI_ 0 0 0 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 517.305667 1032.59678 1.0519 0.00054415 -0.30284 -0.00015666 0.74905 0.00038749 517.3052034464051 55.621 0.31521 49.7 49.525 49.84 -5.9211 0.16271 -0.00023173 NaN 123.45 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 15661000 585 7646 410 414 0.08178619856994374 AFIWPMLIHI 10 Oxidation (M) _AFIWPM(Oxidation (M))LIHI_ AFIWPM(1)LIHI AFIWPM(71)LIHI 0 0 1 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8474731445312 2 628.846645 1255.67874 0.32493 0.00020433 -0.41224 -0.00025924 -0.087317 -5.4909E-05 628.847114787737 100.66 0.072426 94.479 94.431 94.503 -6.1757 7 4 2 0 0 0 0.025277 1 67377 67377 70.865 51.503 1 25441000 586 10066 411 415 647 647 1632 0.06112398944446795 AFKRPLIR 8 Unmodified _AFKRPLIR_ 0 0 0 REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8262023925781 2 500.824361 999.634169 1.701 0.00085192 0.0024376 1.2208E-06 1.7035 0.00085314 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.80992 1 73167 73167 0.69038 0 1 7573500 + 587 17069 412 416 648 648 0.13433755913263212 AFKTGNYVFSY 11 Unmodified _AFKTGNYVFSY_ 0 0 0 nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2 nc|ENSG00000158578|P22557-2|ALAS2 nc|ENSG00000158578|P22557-2|ALAS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2896118164062 2 648.816596 1295.61864 0.069179 4.4884E-05 0.95315 0.00061842 1.0223 0.00066331 649.3190128443725 78.811 0.19826 78.325 78.238 78.436 -0.48596 10 7 2 0 0 0 0.30049 1 43218 43218 6.2058 0.47393 1 539680 588 16304 413 417 649 649 -0.017346201851069054 AFKTGNYVFSY 11 Unmodified _AFKTGNYVFSY_ 0 0 0 nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2 nc|ENSG00000158578|P22557-2|ALAS2 nc|ENSG00000158578|P22557-2|ALAS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 648.816596 1295.61864 0.54121 0.00035115 -0.010743 -6.9704E-06 0.53047 0.00034417 649.3177973550795 78.237 0.19244 78.289 78.202 78.394 0.052444 -0.017658 -0.00072874 NaN 6.2058 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1288300 589 16304 413 417 -0.017346201851069054 AFLEINRQLLF 11 Unmodified _AFLEINRQLLF_ 0 0 0 ENSG00000176401|ENST00000326282|EID2B ENSG00000176401|ENST00000326282|EID2B ENSG00000176401|ENST00000326282|EID2B MSMS AL20221201_MKP_PDAC_01 4 682.3894653320312 2 682.390262 1362.76597 NaN NaN NaN NaN NaN NaN NaN 99.033 1 92.857 92.357 93.357 -6.1757 0 0 0 1.4611E-07 1 65836 65836 100.71 67.923 1 590 8590 414 418 650 650 0.09909896419708275 AFLELLNTLI 10 Unmodified _AFLELLNTLI_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.8385009765625 2 573.842082 1145.66961 1.5755 0.00090406 0.076287 4.3777E-05 1.6517 0.00094784 573.8422945651371 98.211 0.19553 92.036 91.924 92.12 -6.1757 20 12 2 0 0 0 0.10417 1 65162 65162 45.7 5.7499 1 16942000 591 641 415 419 651 651 0.10260328859772017 AFLGFLAY 8 Unmodified _AFLGFLAY_ 0 0 0 REV__ENSG00000108932|ENST00000580666|SLC16A6 REV__ENSG00000108932|ENST00000580666|SLC16A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 901.4826049804688 1 901.481817 900.47454 0.70918 0.00063931 0.49876 0.00044963 1.2079 0.0010889 901.4823318634341 100.53 0.11862 94.352 94.27 94.389 -6.1757 9 6 2 0 0 0 0.32738 1 67242 67242 52.334 10.517 1 20630000 + 592 18637 416 420 652 652 0.020322028454188512 AFLIPDCFPWL 11 Unmodified _AFLIPDCFPWL_ 0 0 0 ENST00000409892.5_1_2:65315130-65315409:-|nuORF ENST00000409892.5_1_2:65315130-65315409:-|nuORF ENST00000409892.5_1_2:65315130-65315409:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.5622253417969 3 441.226499 1320.65767 1.2076 0.00053282 2.0427 0.00090127 3.2502 0.0014341 441.2276881771362 33.472 0.34506 29.486 29.369 29.714 -3.9853 23 19 2 0 0 0 0.63851 1 19221 19221 7.4771 0 1 18177000 593 12969 417 421 653 653 0.010163888449142178 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2901611328125 2 499.289485 996.564418 0.50248 0.00025088 -0.071887 -3.5892E-05 0.43059 0.00021499 499.28947938346784 68.178 0.65816 68.203 68.004 68.662 0.025146 81 32 4 0 0 0 0.010611 2 37393 37393;37501 78.728 48.092 1 70585000 594 1816 418 422 654;655 654 0.06599832454003263 AFLKVSSVF 9 Unmodified _AFLKVSSVF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.290283203125 2 499.289485 996.564418 1.1681 0.00058323 -0.07652 -3.8206E-05 1.0916 0.00054503 499.2894445926047 87.45 1.276 81.275 80.681 81.956 -6.1757 129 70 2 0 0 0 0.014417 6 57349 57349;57473;57600;57727;57852;57975 69.105 40.817 1 111660000 595 1816 418 422 656;657;658;659;660;661 656 0.06599832454003263 AFLLRLYRKTF 11 Unmodified _AFLLRLYRKTF_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.4315795898438 2 714.429722 1426.84489 -0.37724 -0.00026951 3.3863 0.0024193 3.0091 0.0021498 714.4319961560878 101.22 0.12822 101.17 101.09 101.22 -0.04216 14 4 4 0 0 0 0.74452 1 56234 56234 0.26902 0.26902 1 13783000 596 8532 419 423 662 662 0.14854168444617244 AFLLTNETM 9 Unmodified _AFLLTNETM_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7789916992188 2 520.260068 1038.50558 0.41956 0.00021828 -3.1763 -0.0016525 -2.7567 -0.0014342 520.257983984925 84.628 0.32584 84.128 83.998 84.324 -0.49961 23 14 2 0 0 0 0.20528 1 46287 46287 8.5933 0 1 755540 + 597 18791 420 424 663 663 -0.012130119026551256 AFLLTNETM 9 Unmodified _AFLLTNETM_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.260068 1038.50558 0.37381 0.00019448 -3.4286 -0.0017838 -3.0548 -0.0015893 520.259068704602 84.226 0.07782 84.226 84.194 84.272 0 0.049099 -0.00020099 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 218350 + 598 18791 420 424 -0.012130119026551256 AFLQDEWDL 9 Unmodified _AFLQDEWDL_ 0 0 0 ENSG00000169718|ENST00000306796|DUS1L;ENST00000578264.1_1_17:80019305-80022125:-|nuORF ENSG00000169718|ENST00000306796|DUS1L ENSG00000169718|ENST00000306796|DUS1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7677612304688 2 568.766571 1135.51859 NaN NaN NaN NaN NaN NaN NaN 60.103 1 60.103 59.603 60.603 0 0 0 0 0.82015 1 33511 33511 5.2307 0 1 599 7906 421 425 664 664 -0.04374857518905628 AFLQRSNLL 9 Unmodified _AFLQRSNLL_ 0 0 0 ENSG00000143363|ENST00000271620|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1;nc|ENSG00000143363|Q86TP1-2|PRUNE1;nc|ENSG00000143363|Q86TP1-7|PRUNE1 ENSG00000143363|ENST00000271620|PRUNE1 ENSG00000143363|ENST00000271620|PRUNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.308349609375 2 531.308741 1060.60293 0.38531 0.00020472 0.34416 0.00018286 0.72947 0.00038757 531.3086383666529 54.823 0.21688 54.756 54.663 54.88 -0.066936 16 10 2 0 0 0 0.0086209 1 29823 29823 89.401 33.224 1 1802700 600 5497 422 426 665 665 0.07505138088527019 AFLSCFHSF 9 Carbamidomethyl (C) _AFLSC(Carbamidomethyl (C))FHSF_ AFLSC(1)FHSF AFLSC(57)FHSF 0 1 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MSMS AL20221201_MKP_PDAC_01 4 558.2542114257812 2 558.252577 1114.4906 NaN NaN NaN NaN NaN NaN NaN 81.03 1 74.854 74.354 75.354 -6.1757 0 0 0 0.050352 1 53167 53167 57.471 41.624 1 601 4672 423 427 666 666 478 -0.062064589799774694 AFLSCFHSF 9 Carbamidomethyl (C) _AFLSC(Carbamidomethyl (C))FHSF_ AFLSC(1)FHSF AFLSC(64)FHSF 0 1 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MSMS AL20221201_MKP_PDAC_01 4 558.2540283203125 2 558.252577 1114.4906 NaN NaN NaN NaN NaN NaN NaN 81.207 1 75.031 74.531 75.531 -6.1757 0 0 0 0.035065 1 53294 53294 64.236 43.783 1 602 4672 423 427 667 667 478 -0.062064589799774694 AFLSCFHSF 9 Carbamidomethyl (C) _AFLSC(Carbamidomethyl (C))FHSF_ AFLSC(1)FHSF AFLSC(57)FHSF 0 1 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MSMS AL20221201_MKP_PDAC_01 4 558.2533569335938 2 558.252577 1114.4906 NaN NaN NaN NaN NaN NaN NaN 81.402 1 75.226 74.726 75.726 -6.1757 0 0 0 0.050352 1 53433 53433 57.471 30.588 1 603 4672 423 427 668 668 478 -0.062064589799774694 AFLSGLVGLL 10 Unmodified _AFLSGLVGLL_ 0 0 0 ENSG00000177710|ENST00000382435|SLC35G5;ENSG00000259224|ENST00000412468|SLC35G6;ENSG00000164729|ENST00000297307|SLC35G3;ENSG00000236396|ENST00000588001|SLC35G4 ENSG00000177710|ENST00000382435|SLC35G5;ENSG00000236396|ENST00000588001|SLC35G4 ENSG00000177710|ENST00000382435|SLC35G5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.2884826660156 2 495.305136 988.595718 0.95515 0.00047309 1.1175 0.0005535 2.0726 0.0010266 495.30565302341705 101.39 0.089279 95.214 95.163 95.252 -6.1757 7 4 2 0 0 0 0.20941 1 67995 67995 20.454 0 1 9662400 604 8704;10647 424 428 669 669 0.10096405488093296 AFLSPLLFSH 10 Unmodified _AFLSPLLFSH_ 0 0 0 ENST00000235835.7_1_1:19630644-19630701:-|nuORF ENST00000235835.7_1_1:19630644-19630701:-|nuORF ENST00000235835.7_1_1:19630644-19630701:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2124938964844 3 377.878087 1130.61243 0.30541 0.00011541 0.20956 7.9188E-05 0.51497 0.0001946 377.87811951643096 60.643 0.30823 60.599 60.457 60.765 -0.04351 44 15 4 0 0 0 0.41822 1 33044 33044 20.581 7.7083 1 72554000 605 11086 425 429 670 670 0.05234906374039383 AFLTDTGEF 9 Unmodified _AFLTDTGEF_ 0 0 0 REV__ENST00000444228.2_1_16:31405642-31419232:+|nuORF REV__ENST00000444228.2_1_16:31405642-31419232:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7339477539062 2 500.73474 999.454927 0.36914 0.00018484 -1.9806 -0.00099174 -1.6114 -0.00080691 500.7337650191834 69.72 0.4405 69.72 69.423 69.863 0 42 20 3 0 0 0 0.087258 1 38844 38844 36.044 5.8194 1 2368500 + 606 21351 426 430 671 671 -0.04482217955990109 AFLTQSSQL 9 Unmodified _AFLTQSSQL_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7647094726562 2 497.763832 993.513111 -0.019626 -9.7692E-06 1.0274 0.0005114 1.0078 0.00050163 497.7642704073023 54.63 0.21651 54.163 54.044 54.261 -0.46664 18 10 2 0 0 0 0.18465 1 29599 29599 24.674 8.8267 1 2668800 607 4607 427 431 672 672 0.01609463689283075 AFLVMIVLL 9 Oxidation (M) _AFLVM(Oxidation (M))IVLL_ AFLVM(1)IVLL AFLVM(56)IVLL 0 0 1 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.8170776367188 2 517.819564 1033.62458 0.46169 0.00023907 -0.076302 -3.9511E-05 0.38539 0.00019956 517.8199430430874 46.399 0.3885 46.063 45.881 46.27 -0.33664 34 19 2 0 0 0 0.028712 1 24807 24807 56.048 18.074 1 9591800 + 608 23769 428 432 673 673 1854 0.10910806792867334 AFLVPAPFY 9 Unmodified _AFLVPAPFY_ 0 0 0 ENST00000527145.1_1_11:44071584-44081467:+|nuORF;ENSG00000205126|ENST00000378832|ACCSL ENST00000527145.1_1_11:44071584-44081467:+|nuORF ENST00000527145.1_1_11:44071584-44081467:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.7725219726562 2 512.778754 1023.54295 NaN NaN NaN NaN NaN NaN NaN 100.93 1 94.756 94.256 95.256 -6.1757 0 0 0 0.38239 1 67620 67620 20.871 2.7362 1 609 10349 429 433 674 674 0.03212447425278242 AFLVSSFQF 9 Unmodified _AFLVSSFQF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;ENST00000318240.7_1_18:47009961-47013433:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2728881835938 2 523.271293 1044.52803 1.2996 0.00068006 0.81798 0.00042803 2.1176 0.0011081 523.2720591164289 100.24 0.14661 94.063 93.957 94.103 -6.1757 18 8 3 0 0 0 0.16776 1 66989 66989 26.341 10.573 1 40940000 610 16597 430 434 675 675 0.007549555572950339 AFLYDLAF 8 Unmodified _AFLYDLAF_ 0 0 0 REV__nc|ENSG00000124749|Q96P44-3|COL21A1 REV__nc|ENSG00000124749|Q96P44-3|COL21A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.24462890625 2 480.247286 958.48002 NaN NaN NaN NaN NaN NaN NaN 61.476 1 61.476 60.976 61.976 0 0 0 0 0.93587 1 34275 34275 13.508 2.684 1 + 611 19467 431 435 676 676 -0.0008811836275981477 AFLYNDQLIW 10 Unmodified _AFLYNDQLIW_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B;ENST00000490178.1_1_7:6854391-6861977:-|nuORF ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8272705078125 2 641.826963 1281.63937 2.3134 0.0014848 1.2705 0.00081547 3.5839 0.0023003 641.8278235344911 95.866 0.29312 95.87 95.737 96.03 0.004158 24 10 3 0 0 0 0.40046 1 53257 53257 32.305 18.399 1 1794400 612 3653 432 436 677 677 0.009819701945616544 AFMKGVFTF 9 Oxidation (M) _AFM(Oxidation (M))KGVFTF_ AFM(1)KGVFTF AFM(50)KGVFTF 0 0 1 ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENSG00000244187|ENST00000290079|TMEM141 ENSG00000244187|ENST00000290079|TMEM141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2681884765625 2 532.267696 1062.52084 0.34501 0.00018364 0.46325 0.00024657 0.80826 0.00043021 532.2679804882448 63.113 0.44603 63.091 62.851 63.297 -0.021614 83 22 5 0 0 0 0.039985 2 34439 34439;34542 49.933 31.327 1 82710000 613 10726 433 437 678;679 678 1718 -0.007921003148112504 AFMKGVFTF 9 Unmodified _AFMKGVFTF_ 0 0 0 ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENSG00000244187|ENST00000290079|TMEM141 ENSG00000244187|ENST00000290079|TMEM141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2711791992188 2 524.270238 1046.52592 0.14712 7.7129E-05 1.5724 0.00082437 1.7195 0.0009015 524.2705577944272 75.714 0.41478 75.762 75.494 75.909 0.047943 52 18 4 0 0 0 0.05447 2 41704 41704;41821 43.858 24.419 1 18897000 614 10726 433 438 680;681 680 0.004522035478203179 AFMKGVFTF 9 Unmodified _AFMKGVFTF_ 0 0 0 ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENSG00000244187|ENST00000290079|TMEM141 ENSG00000244187|ENST00000290079|TMEM141 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2711181640625 2 524.270238 1046.52592 1.2848 0.00067356 1.1759 0.00061648 2.4606 0.00129 524.2714607284472 96.003 0.67467 89.827 89.63 90.305 -6.1757 109 40 5 0 0 0 0.015445 2 63526 63526;63647 68.081 41.739 1 367640000 615 10726 433 438 682;683 682 0.004522035478203179 AFMMMEEE 8 Unmodified _AFMMMEEE_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.1886291503906 2 509.189939 1016.36533 -0.013206 -6.7243E-06 -0.24491 -0.00012471 -0.25812 -0.00013143 509.1894508884686 71.423 0.2866 71.423 71.237 71.523 0 37 15 3 0 0 0 0.80624 1 39757 39757 2.8892 0.31174 1 2242400 + 616 17541 434 439 684 684 -0.1422025522288095 AFMVNGQKF 9 Oxidation (M) _AFM(Oxidation (M))VNGQKF_ AFM(1)VNGQKF AFM(82)VNGQKF 0 0 1 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2599487304688 2 529.260402 1056.50625 -0.088789 -4.6993E-05 -0.20358 -0.00010775 -0.29237 -0.00015474 529.2602483625511 41.333 0.20294 41.03 40.909 41.112 -0.30304 20 9 3 0 0 0 0.0094915 1 21890 21890 81.864 24.393 1 5107000 617 16497 435 440 685 685 1822 -0.019741724629511737 AFMVNGQKF 9 Oxidation (M) _AFM(Oxidation (M))VNGQKF_ AFM(1)VNGQKF AFM(100)VNGQKF 0 0 1 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2603149414062 2 529.260402 1056.50625 -0.40581 -0.00021478 0.70255 0.00037183 0.29674 0.00015705 529.260569307553 41.746 0.15971 41.439 41.355 41.515 -0.30682 12 7 2 0 0 0 0.0086629 1 22147 22147 101.72 16.365 1 4917500 618 16497 435 440 686 686 1822 -0.019741724629511737 AFMVNGQKF 9 Oxidation (M) _AFM(Oxidation (M))VNGQKF_ AFM(1)VNGQKF AFM(100)VNGQKF 0 0 1 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2598876953125 2 529.260402 1056.50625 0.19279 0.00010204 -0.60652 -0.00032101 -0.41373 -0.00021897 529.2603871467717 41.032 0.22445 41.03 40.891 41.115 -0.0017891 21 10 3 0 0 0 0.0086629 1 21905 21905 101.72 16.365 1 2514300 619 16497 435 440 687 687 1822 -0.019741724629511737 AFMVNGQKF 9 Oxidation (M) _AFM(Oxidation (M))VNGQKF_ AFM(1)VNGQKF AFM(89)VNGQKF 0 0 1 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.260498046875 2 529.260402 1056.50625 -0.15514 -8.2107E-05 -0.42767 -0.00022635 -0.58281 -0.00030846 529.260032066354 41.499 0.17123 41.497 41.402 41.573 -0.0017929 16 7 3 0 0 0 0.0086179 1 22182 22182 89.427 22.083 1 4614100 620 16497 435 440 688 688 1822 -0.019741724629511737 AFMVNGQKF 9 Oxidation (M) _AFM(Oxidation (M))VNGQKF_ AFM(1)VNGQKF AFM(97)VNGQKF 0 0 1 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.260986328125 2 529.260402 1056.50625 0.73425 0.00038861 -1.3017 -0.00068891 -0.5674 -0.0003003 529.2602473992984 45.917 0.31759 40.962 40.774 41.091 -4.9549 44 20 3 0 0 0 0.0083087 1 28234 28234 97.075 32.838 1 19124000 621 16497 435 440 689 689 1822 -0.019741724629511737 AFMVNGQKF 9 Unmodified _AFMVNGQKF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2637329101562 2 521.262945 1040.51134 1.1616 0.00060548 -1.0888 -0.00056755 0.072767 3.7931E-05 521.2627744541428 52.886 0.31334 47.082 46.921 47.234 -5.8042 26 16 2 0 0 0 0.0090851 1 33382 33382 85.357 30.583 1 33063000 622 16497 435 441 690 690 -0.007298686003196053 AFNKVLAHF 9 Unmodified _AFNKVLAHF_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7930297851562 2 523.792727 1045.5709 0.57326 0.00030027 0.22803 0.00011944 0.80129 0.00041971 523.7924355009028 46.163 0.21117 46.135 45.997 46.208 -0.028011 15 9 2 0 0 0 0.0094915 1 24813 24813 81.864 60.993 1 2941400 623 8887 436 442 691 691 0.049937704053718335 AFNSRSYLI 9 Unmodified _AFNSRSYLI_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7855224609375 2 535.785099 1069.55564 0.015366 8.2327E-06 1.3163 0.00070528 1.3317 0.00071351 535.7854806217728 51.667 0.29688 51.608 51.455 51.751 -0.058914 24 14 2 0 0 0 0.024189 1 27941 27941 59.368 3.8656 1 11056000 624 9430 437 443 692 692 0.023648588175319674 AFNSRSYLI 9 Unmodified _AFNSRSYLI_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.7858276367188 2 535.785099 1069.55564 NaN NaN NaN NaN NaN NaN NaN 57.206 1 51.178 50.678 51.678 -6.0275 0 0 0 0.15231 1 36578 36578 36.506 0 1 625 9430 437 443 693 693 0.023648588175319674 AFPDAQKWSIQ 11 Unmodified _AFPDAQKWSIQ_ 0 0 0 REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8890075683594 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 95.542 1 95.546 95.046 96.046 0.004158 0 0 0 0.94165 1 53078 53078 0.45452 0 1 + 626 20926 438 444 694 694 0.0072018456346540916 AFPDWPWLF 9 Unmodified _AFPDWPWLF_ 0 0 0 nc|ENSG00000124193|Q13247-2|SRSF6 nc|ENSG00000124193|Q13247-2|SRSF6 nc|ENSG00000124193|Q13247-2|SRSF6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 590.2877807617188 2 589.78711 1177.55967 1.0264 0.00060537 0.0007585 4.4735E-07 1.0272 0.00060582 589.7878345408097 102.51 0.067307 96.331 96.306 96.373 -6.1757 10 7 2 0 0 0 0.203 1 68806 68806 9.3474 0.75416 1 2060800 627 16167 439 445 695 695 -0.022010516888030907 AFPEKIPLF 9 Unmodified _AFPEKIPLF_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.R223Gfs*27|1|0.56|ENSG00000172493|chr4:87047220-87047220|C/-|frameshift_variant nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MSMS AL20221201_MKP_PDAC_01 4 531.3062133789062 2 531.305136 1060.59572 NaN NaN NaN NaN NaN NaN NaN 95.542 1 89.366 88.866 89.866 -6.1757 0 0 0 0.17247 1 63285 63285 34.102 7.2188 1 628 8226 440 446 696 696 0.06784405488065204 AFQGPPGY 8 Unmodified _AFQGPPGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 836.3937377929688 1 836.39373 835.386454 0.060476 5.0582E-05 0.073262 6.1276E-05 0.13374 0.00011186 836.3937331245953 82.937 0.41813 82.439 82.224 82.642 -0.49751 44 17 3 0 0 0 0.41521 2 45422 45324;45422 42.968 42.968 1 5200900 629 9647 441 447 697;698 698 -0.03782417745185285 AFQGPPGY 8 Unmodified _AFQGPPGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 836.3959350585938 1 836.39373 835.386454 1.261 0.0010547 -0.11098 -9.2825E-05 1.15 0.00096183 836.3937986231604 90.585 0.5375 84.409 84.186 84.723 -6.1757 57 31 2 0 0 0 0.41521 3 59731 59731;59860;59990 42.968 42.968 1 18594000 630 9647 441 447 699;700;701 699 -0.03782417745185285 AFQGPPGY 8 Unmodified _AFQGPPGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 836.39373 835.386454 0.060476 5.0582E-05 0.073262 6.1276E-05 0.13374 0.00011186 836.3937331245953 82.937 0.41813 82.439 82.224 82.642 -0.49751 0 0 NaN 42.968 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5200900 631 9647 441 447 -0.03782417745185285 AFQKIVVLF 9 Unmodified _AFQKIVVLF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8299560546875 2 532.828778 1063.643 0.17741 9.4527E-05 1.2289 0.00065479 1.4063 0.00074931 532.8292830118643 79.755 0.35236 79.81 79.625 79.977 0.05497 36 13 4 0 0 0 0.026094 2 44047 44047;44152 57.471 15.377 1 9303900 632 1340;4807 442 448 702;703 702 0.1137268475908968 AFQKIVVLF 9 Unmodified _AFQKIVVLF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8299560546875 2 532.828778 1063.643 1.3949 0.00074323 -0.15231 -8.1157E-05 1.2426 0.00066207 532.8287797913536 98.159 0.37118 91.984 91.701 92.072 -6.1757 49 23 4 0 0 0 0.026094 1 64940 64940 57.471 15.377 1 154030000 633 1340;4807 442 448 704 704 0.1137268475908968 AFREHQQY 8 Unmodified _AFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7576293945312 2 539.756872 1077.49919 -0.35007 -0.00018895 -0.82112 -0.0004432 -1.1712 -0.00063216 540.2576854032507 18.477 0.11925 18.477 18.4 18.519 0 21 15 2 0 0 0 0.72664 1 9179 9179 14.838 4.0143 1 637980 634 16196 443 449 705 705 -0.036457690191582515 AFRGVHRY 8 Unmodified _AFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2727661132812 2 503.272493 1004.53043 -0.96911 -0.00048773 0.65469 0.00032949 -0.31442 -0.00015824 503.2729619043201 18.252 0.093739 18.266 18.216 18.31 0.013865 39 22 2 0 0 0 0.42423 1 9125 9125 42.095 29.563 1 1430100 635 10454 444 450 706 706 0.028348488055939924 AFRGVHRY 8 Unmodified _AFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2720947265625 2 503.272493 1004.53043 1.0614 0.00053417 -1.1669 -0.00058728 -0.10554 -5.3116E-05 503.27187776423887 19.493 0.29756 16.837 16.689 16.987 -2.6564 52 28 2 0 0 0 0.069468 2 10284 10284;10393 123.1 82.648 1 14600000 636 10454 444 450 707;708 707 0.028348488055939924 AFRGVHRY 8 Unmodified _AFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 503.272493 1004.53043 -0.13036 -6.5609E-05 -0.71644 -0.00036057 -0.84681 -0.00042617 503.27227568245706 18.392 0.10427 18.392 18.333 18.437 0 0.062908 -0.00088785 NaN 42.095 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 647100 637 10454 444 450 0.028348488055939924 AFRRLFEF 8 Unmodified _AFRRLFEF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.815185546875 2 543.298176 1084.5818 NaN NaN NaN NaN NaN NaN NaN 48.563 1 48.519 48.019 49.019 -0.04369 0 0 0 0.9706 1 26205 26205 6.3541 0 1 638 9014 445 451 709 709 0.04289172779635919 AFSGLTSYSFD 11 Unmodified _AFSGLTSYSFD_ 0 0 0 ENST00000444439.1_1_7:54487665-54487836:+|nuORF ENST00000444439.1_1_7:54487665-54487836:+|nuORF ENST00000444439.1_1_7:54487665-54487836:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.7964477539062 2 597.769311 1193.52407 0.36521 0.00021831 2.3318 0.0013939 2.697 0.0016122 597.7708863235321 83.009 0.33467 76.833 76.79 77.125 -6.1757 22 18 2 0 0 0 0.29698 1 54596 54596 8.7454 0 1 9026700 639 13436 446 452 710 710 -0.06495178727095663 AFSGSFIGLF 10 Unmodified _AFSGSFIGLF_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.273193359375 2 523.271293 1044.52803 2.0878 0.0010925 0.51861 0.00027138 2.6064 0.0013639 523.2716111311298 95.407 0.35882 95.411 95.265 95.624 0.004158 32 13 3 0 0 0 0.31022 1 52989 52989 26.884 0.54238 1 4666400 + 640 29898 447 453 711 711 0.007549555572722966 AFSLAEAKF 9 Unmodified _AFSLAEAKF_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D;ENST00000555335.1_1_14:67815736-67826415:-|nuORF ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2631225585938 2 492.263468 982.512382 -0.12321 -6.0654E-05 0.012317 6.0633E-06 -0.1109 -5.4591E-05 492.26350985441553 61.052 0.25897 60.562 60.456 60.715 -0.48932 18 12 2 0 0 0 0.078314 1 33229 33229 38.176 14.155 1 3042200 641 1841 448 454 712 712 0.02042669040235978 AFSLLFLVPG 10 Unmodified _AFSLLFLVPG_ 0 0 0 REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.31201171875 2 532.312961 1062.61137 NaN NaN NaN NaN NaN NaN NaN 69.414 1 69.445 68.945 69.945 0.030914 0 0 0 0.48706 1 38154 38154 26.884 1.4843 1 + 642 25051 449 455 713 713 0.08256692005124933 AFSNRVPGNRR 11 Unmodified _AFSNRVPGNRR_ 0 0 0 ENST00000567644.5_1_15:74217618-74217795:-|nuORF ENST00000567644.5_1_15:74217618-74217795:-|nuORF ENST00000567644.5_1_15:74217618-74217795:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.3491821289062 2 637.347252 1272.67995 NaN NaN NaN NaN NaN NaN NaN 83.813 1 83.313 82.813 83.813 -0.49961 0 0 0 0.93613 1 45873 45873 5.2969 2.7194 1 643 15441 450 456 714 714 0.05451749357530389 AFSPDSYFL 9 Unmodified _AFSPDSYFL_ 0 0 0 ENSG00000116213|ENST00000270708|WRAP73;ENST00000471223.1_1_1:3548765-3548867:-|nuORF ENSG00000116213|ENST00000270708|WRAP73 ENSG00000116213|ENST00000270708|WRAP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7449951171875 2 523.745108 1045.47566 0.5551 0.00029073 -1.366 -0.00071546 -0.81095 -0.00042473 523.744411868011 82.138 0.2692 81.643 81.498 81.767 -0.4952 15 10 2 0 0 0 0.53666 1 45012 45012 5.2307 0 1 523940 644 3207 451 457 715 715 -0.045256275763449594 AFSPVLLQF 9 Unmodified _AFSPVLLQF_ 0 0 0 ENSG00000132510|ENST00000448097|KDM6B;nc|ENSG00000132510|O15054-1|KDM6B ENSG00000132510|ENST00000448097|KDM6B ENSG00000132510|ENST00000448097|KDM6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2944641113281 2 511.289485 1020.56442 4.2743 0.0021854 0.94485 0.00048309 5.2191 0.0026685 511.28988105835197 98.636 0.18483 98.608 98.481 98.666 -0.028282 12 6 2 0 0 0 0.038285 1 54783 54783 50.855 27.707 1 2421100 645 4416 452 458 716 716 0.05495832454005267 AFSQAELY 8 Unmodified _AFSQAELY_ 0 0 0 ENST00000559042.1_1_14:24612620-24612713:-|nuORF ENST00000559042.1_1_14:24612620-24612713:-|nuORF ENST00000559042.1_1_14:24612620-24612713:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.43994140625 1 928.441074 927.433798 0.43149 0.00040061 -1.3014 -0.0012083 -0.86991 -0.00080766 928.4395553118018 56.826 0.28933 56.826 56.685 56.974 0 19 12 2 0 0 0 0.40035 1 31604 31604 44.407 6.2558 1 3019100 646 15288 453 459 717 717 -0.032821832648664895 AFSTTFEH 8 Unmodified _AFSTTFEH_ 0 0 0 nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29 nc|ENSG00000168594|Q9UKF5-2|ADAM29 nc|ENSG00000168594|Q9UKF5-2|ADAM29 MSMS AL20221201_MKP_PDAC_01 4 469.8800964355469 2 470.213975 938.413397 NaN NaN NaN NaN NaN NaN NaN 15.071 1 12.544 12.044 13.044 -2.5273 0 0 0 0.97348 1 7703 7703 5.7604 1.4312 1 647 7783 454 460 718 718 -0.058273539246670225 AFTCSIYI 8 Unmodified _AFTCSIYI_ 0 0 0 ENSG00000177599|ENST00000323169|ZNF491 ENSG00000177599|ENST00000323169|ZNF491 ENSG00000177599|ENST00000323169|ZNF491 MULTI-MSMS AL20221201_MKP_PDAC_01 4 917.4439086914062 1 917.443717 916.43644 0.71615 0.00065703 -0.20855 -0.00019134 0.5076 0.00046569 917.4433948036226 70.604 0.42229 64.428 64.224 64.646 -6.1757 35 22 2 0 0 0 0.5953 1 46051 46051 26.341 0 1 31777000 648 8694 455 461 719 719 -0.025120511315662952 AFTDRSNLF 9 Unmodified _AFTDRSNLF_ 0 0 0 nc|ENSG00000127081|Q5JVG2-2|ZNF484;ENSG00000127081|ENST00000375495|ZNF484;nc|ENSG00000127081|Q5JVG2-3|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7667846679688 2 535.766906 1069.51926 0.65996 0.00035358 -1.2306 -0.00065934 -0.57069 -0.00030575 535.7661576271631 50.742 0.26485 50.329 50.15 50.415 -0.41351 21 12 2 0 0 0 0.0082475 1 27322 27322 92.653 0 1 7017200 649 3987 456 462 720 720 -0.012720180792030078 AFTIQAIENL 10 Unmodified _AFTIQAIENL_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3074340820312 2 560.305864 1118.59717 0.87119 0.00048813 -0.34107 -0.0001911 0.53012 0.00029703 560.3059071690875 36.497 0.21888 36.497 36.369 36.588 0 23 10 3 0 0 0 0.086206 1 19345 19345 57.722 13.95 1 8995300 650 6658 457 463 721 721 0.04261994786179457 AFTKATPLSL 10 Unmodified _AFTKATPLSL_ 0 0 0 ENST00000466325.1_1_X:153581080-153581464:-|nuORF ENST00000466325.1_1_X:153581080-153581464:-|nuORF ENST00000466325.1_1_X:153581080-153581464:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.2076416015625 3 350.206092 1047.59645 NaN NaN NaN NaN NaN NaN NaN 49.71 1 44.171 43.671 44.671 -5.5391 0 0 0 0.91523 1 31087 31087 3.8763 0 1 651 13753 458 464 722 722 0.07455200137133033 AFTQTDVATF 10 Unmodified _AFTQTDVATF_ 0 0 0 ENSG00000255154|ENST00000461393|HTD2 ENSG00000255154|ENST00000461393|HTD2 ENSG00000255154|ENST00000461393|HTD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.764892578125 2 550.766571 1099.51859 NaN NaN NaN NaN NaN NaN NaN 63.528 1 63.528 63.028 64.028 0 0 0 0 0.71851 1 35437 35437 15.847 0 1 652 10787 459 465 723 723 -0.02718857518925688 AFTTHPSQF 9 Unmodified _AFTTHPSQF_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2484130859375 2 518.248349 1034.48214 -0.50999 -0.0002643 0.021028 1.0898E-05 -0.48896 -0.0002534 518.2483518011627 35.744 0.18612 35.522 35.412 35.599 -0.2224 13 7 2 0 0 0 0.013323 1 18734 18734 71.134 48.397 1 2185500 653 3800 460 466 724 724 -0.03371689624964347 AFVDEAKTY 9 Unmodified _AFVDEAKTY_ 0 0 0 nc|ENSG00000148584|Q9NQ94-5|A1CF;nc|ENSG00000148584|Q9NQ94-6|A1CF;nc|ENSG00000148584|Q9NQ94-3|A1CF;ENSG00000148584|ENST00000373997|A1CF;nc|ENSG00000148584|Q9NQ94|A1CF;nc|ENSG00000148584|Q9NQ94-4|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF nc|ENSG00000148584|Q9NQ94-5|A1CF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.256103515625 2 522.25584 1042.49713 -0.32449 -0.00016947 0.40405 0.00021102 0.079562 4.1552E-05 522.7573245182414 41.751 0.17987 41.749 41.64 41.82 -0.0017929 13 8 2 0 0 0 0.20727 1 22362 22362 7.9102 1.5561 1 5275000 654 5945 461 467 725 725 -0.022422425476179342 AFVGQMHQQG 10 Unmodified _AFVGQMHQQG_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 368.1759033203125 3 368.174797 1101.50256 NaN NaN NaN NaN NaN NaN NaN 42.699 1 38.015 37.515 38.515 -4.6846 0 0 0 0.88176 1 25827 25827 5.0475 0 1 655 3829 462 468 726 726 -0.044128422368203246 AFVMFFSFF 9 Unmodified _AFVMFFSFF_ 0 0 0 ENST00000311601.5_1_5:171763888-171764047:-|nuORF ENST00000311601.5_1_5:171763888-171764047:-|nuORF ENST00000311601.5_1_5:171763888-171764047:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.7789306640625 2 571.772614 1141.53067 NaN NaN NaN NaN NaN NaN NaN 51.507 1 45.858 45.358 46.358 -5.649 0 0 0 0.11925 1 32419 32419 40.449 6.0469 1 656 11693 463 469 727 727 -0.03442912309401436 AFWESSIVY 9 Unmodified _AFWESSIVY_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2;ENST00000512600.1_1_5:112919975-112927944:+|nuORF ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2666015625 2 551.266207 1100.51786 0.37083 0.00020443 -0.70741 -0.00038997 -0.33658 -0.00018555 551.2660214494028 59.152 0.34027 58.661 58.474 58.814 -0.49079 46 15 4 0 0 0 0.30562 2 32142 32142;32248 16.942 5.302 1 7081800 657 678 464 470 728;729 728 -0.028376521679547295 AFYDAQVEF 9 Unmodified _AFYDAQVEF_ 0 0 0 nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2449951171875 2 545.248015 1088.48148 0.21303 0.00011615 -4.2244 -0.0023033 -4.0114 -0.0021872 545.2448207803474 37.935 0.22335 37.935 37.846 38.069 0 18 10 2 0 0 0 0.1773 1 20239 20239 25.399 4.5281 1 1611100 658 8884 465 471 730 730 -0.05922529064673654 AFYDCDRDF 9 Unmodified _AFYDCDRDF_ 0 0 0 REV__nc|ENSG00000143207|Q8NHY2-3|COP1 REV__nc|ENSG00000143207|Q8NHY2-3|COP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2726440429688 2 576.226756 1150.43896 0.58945 0.00033966 1.3172 0.00075903 1.9067 0.0010987 576.2277172928834 87.523 0.21297 87.019 86.923 87.136 -0.50423 13 9 2 0 0 0 0.203 1 47858 47858 9.3474 6.0661 1 426820 + 659 29675 466 472 731 731 -0.13024247464545624 AFYEDATEF 9 Unmodified _AFYEDATEF_ 0 0 0 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7332763671875 2 546.729655 1091.44476 2.7368 0.0014963 4.0139 0.0021945 6.7507 0.0036908 546.7319552044222 99.85 0.13383 99.814 99.747 99.88 -0.036301 7 4 2 0 0 0 0.53666 1 55475 55475 5.2307 0.47466 1 5862300 660 5676 467 473 732 732 -0.09730825681231181 AFYEDATEF 9 Unmodified _AFYEDATEF_ 0 0 0 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.729655 1091.44476 0.1916 0.00010475 4.7235 0.0025825 4.9151 0.0026872 546.7323229735592 99.928 0.17445 99.77 99.641 99.815 -0.1575 -0.021916 0.0002331 NaN 5.2307 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1409200 661 5676 467 473 -0.09730825681231181 AFYHVQNIAVE 11 Unmodified _AFYHVQNIAVE_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8882446289062 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 14.706 1 14.675 14.175 15.175 -0.030868 0 0 0 0.94165 1 7172 7172 0.45452 0.1855 1 662 760 468 474 733 733 0.007201845634881465 AFYHVQNIAVE 11 Unmodified _AFYHVQNIAVE_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MSMS AL20221201_MKP_PDAC_01 4 430.8881225585938 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 101.98 1 95.802 95.302 96.302 -6.1757 0 0 0 0.93933 1 68451 68451 1.2148 0 1 663 760 468 474 734 734 0.007201845634881465 AFYMEEGVPY 10 Unmodified _AFYMEEGVPY_ 0 0 0 ENST00000486828.6_1_5:176910647-176917003:-|nuORF;nc|ENSG00000196923|Q9NR12-2|PDLIM7;ENSG00000196923|ENST00000355841|PDLIM7 ENST00000486828.6_1_5:176910647-176917003:-|nuORF ENST00000486828.6_1_5:176910647-176917003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.5109252929688 3 402.510964 1204.51106 NaN NaN NaN NaN NaN NaN NaN 69.402 1 69.433 68.933 69.933 0.030914 0 0 0 0.7417 1 38147 38147 12.873 6.6382 1 664 9883 469 475 735 735 -0.08301333110830456 AFYSSTGWY 9 Unmodified _AFYSSTGWY_ 0 0 0 nc|ENSG00000146276|P24046-3|GABRR1;nc|ENSG00000146276|P24046-2|GABRR1;ENSG00000146276|ENST00000454853|GABRR1;ENSG00000111886|ENST00000402938|GABRR2;nc|ENSG00000111886|P28476-2|GABRR2;ENSG00000183185|ENST00000472788|GABRR3 nc|ENSG00000146276|P24046-3|GABRR1;ENSG00000183185|ENST00000472788|GABRR3 nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2332763671875 2 541.234907 1080.45526 0.1743 9.4335E-05 -2.729 -0.001477 -2.5547 -0.0013827 541.2336737377316 68.601 0.43048 68.12 67.99 68.421 -0.48071 37 19 2 0 0 0 0.2001 1 37479 37479 23.148 3.7094 1 4871400 665 5768;9125 470 476 736 736 -0.08174798236154857 AFYWTVLSL 9 Unmodified _AFYWTVLSL_ 0 0 0 nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A;CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant nc|ENSG00000141837|O00555-5|CACNA1A nc|ENSG00000141837|O00555-5|CACNA1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2944946289062 2 550.294768 1098.57498 0.6333 0.0003485 -1.4305 -0.00078717 -0.79716 -0.00043867 550.2939392748286 64.046 0.41154 63.561 63.432 63.844 -0.48512 62 20 5 0 0 0 0.37804 1 35063 35063 13.508 0.46542 1 2917000 666 5376 471 477 737 737 0.029638151084100173 AFYWWERCN 9 Unmodified _AFYWWERCN_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5181884765625 3 425.518564 1273.53386 -0.036257 -1.5428E-05 -0.29989 -0.00012761 -0.33614 -0.00014304 425.51841387724585 54.15 0.20068 54.083 53.941 54.142 -0.066936 15 9 2 0 0 0 0.49272 1 29391 29391 4.897 2.2658 1 2131500 + 667 17243 472 478 738 738 -0.09196269202698204 AGAAKKDL 8 Unmodified _AGAAKKDL_ 0 0 0 REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF REV__ENST00000447052.1_1_21:24762753-24763314:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.229736328125 2 387.229428 772.444303 -0.85686 -0.0003318 -0.21451 -8.3063E-05 -1.0714 -0.00041486 387.2292846168696 30.422 0.21896 30.422 30.305 30.524 0 19 10 2 0 0 0 0.79669 1 15791 15791 8.5933 0 1 4348700 + 668 27153 473 479 739 739 0.04897844180220545 AGAARLWG 8 Unmodified _AGAARLWG_ 0 0 0 REV__ENST00000548759.1_1_12:113495266-113495848:+|nuORF REV__ENST00000548759.1_1_12:113495266-113495848:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2223815917969 2 401.221937 800.429321 -0.39571 -0.00015877 0.83417 0.00033469 0.43846 0.00017592 401.2220973881453 51.342 0.37178 51.288 51.127 51.499 -0.053871 24 18 2 0 0 0 0.80232 1 27760 27760 5.2307 0 1 2757500 + 669 28687 474 480 740 740 0.021123971028941924 AGAAYGKYY 9 Unmodified _AGAAYGKYY_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2299194335938 2 482.232168 962.449782 -0.12391 -5.9753E-05 -2.949 -0.0014221 -3.0729 -0.0014819 482.23072284334097 22.982 0.23141 22.982 22.876 23.107 0 17 12 2 0 0 0 0.53666 1 11683 11683 5.2307 2.3415 1 430720 + 670 19336 475 481 741 741 -0.03294477027964149 AGAGHGAYIY 10 Unmodified _AGAGHGAYIY_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2360534667969 2 490.235242 978.45593 0.18935 9.2828E-05 -1.1908 -0.00058376 -1.0014 -0.00049093 490.23469695992367 65.826 0.32944 65.341 65.169 65.499 -0.48428 30 13 3 0 0 0 0.57332 1 35909 35909 12.532 1.732 1 6846200 + 671 20072 476 482 742 742 -0.03415958796426821 AGAKRRHPE 9 Unmodified _AGAKRRHPE_ 0 0 0 REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2868957519531 2 511.286131 1020.55771 0.95531 0.00048844 -0.44905 -0.0002296 0.50626 0.00025884 511.28569154425975 20.13 0.33258 17.474 17.312 17.645 -2.6564 50 23 3 0 0 0 0.25681 1 10666 10666 19.257 3.4098 1 7788800 + 672 25826 477 483 743 743 0.048253323459903186 AGAKRRHPE 9 Unmodified _AGAKRRHPE_ 0 0 0 REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF REV__ENST00000356522.4_1_1:208061224-208062051:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.7667846679688 2 511.286131 1020.55771 0.95531 0.00048844 -0.44905 -0.0002296 0.50626 0.00025884 511.28569154425975 20.13 0.33258 17.474 17.312 17.645 -2.6564 50 23 3 0 0 0 0.18118 1 10759 10759 19.257 8.4331 1 7788800 + 673 25826 477 483 744 744 0.048253323459903186 AGALTQPVPPA 11 Unmodified _AGALTQPVPPA_ 0 0 0 ENSG00000187094|ENST00000396169|CCK;ENST00000484359.1_1_3:42304789-42306234:-|nuORF ENSG00000187094|ENST00000396169|CCK ENSG00000187094|ENST00000396169|CCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2853393554688 2 511.287474 1020.5604 -0.0092788 -4.7441E-06 -1.5284 -0.00078147 -1.5377 -0.00078621 511.28666715837613 14.769 0.10631 12.241 12.201 12.307 -2.5273 29 21 2 0 0 0 0.5229 1 7519 7519 15.248 1.3424 1 1767000 674 9536 478 484 745 745 0.05093742960275449 AGARSSLKM 9 Unmodified _AGARSSLKM_ 0 0 0 REV__ENST00000376259.6_1_1:12268712-12268742:+|nuORF REV__ENST00000376259.6_1_1:12268712-12268742:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.7514953613281 2 460.752744 919.490935 NaN NaN NaN NaN NaN NaN NaN 34.411 1 30.316 29.816 30.816 -4.0951 0 0 0 0.32177 1 19836 19836 24.021 5.8742 1 + 675 26220 479 485 746 746 0.02796960739874521 AGASALLPTD 10 Unmodified _AGASALLPTD_ 0 0 0 ENST00000376560.7_2_6:30524925-30525204:+|nuORF ENST00000376560.7_2_6:30524925-30525204:+|nuORF ENST00000376560.7_2_6:30524925-30525204:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7344360351562 2 458.242732 914.470912 0.75658 0.0003467 -0.63839 -0.00029254 0.11818 5.4157E-05 458.2420159463602 46.639 0.42675 46.639 46.412 46.839 0 50 19 4 0 0 0 0.22667 1 25417 25417 15.847 1.0089 1 6852100 676 12501 480 486 747 747 0.010254882808908405 AGDELVLNPD 10 Unmodified _AGDELVLNPD_ 0 0 0 REV__ENST00000596626.1_1_19:17392705-17393630:+|nuORF REV__ENST00000596626.1_1_19:17392705-17393630:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7569580078125 2 521.756204 1041.49785 NaN NaN NaN NaN NaN NaN NaN 68.824 1 68.343 67.843 68.843 -0.48071 0 0 0 0.47175 1 37620 37620 27.629 3.6082 1 + 677 21516 481 487 748 748 -0.021234478985661553 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 939.4581298828125 1 939.457059 938.449782 0.046128 4.3336E-05 0.20861 0.00019598 0.25474 0.00023931 939.4566466905192 77.585 0.26013 77.585 77.511 77.771 0 26 17 2 0 0 0 0.10734 1 43105 43105 32.305 3.8186 1 2315100 678 2038 482 488 749 749 -0.02190477027943416 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 939.4535522460938 1 939.457059 938.449782 -0.79496 -0.00074683 0.76571 0.00071935 -0.029246 -2.7476E-05 939.4573437216226 78.052 0.30375 77.569 77.456 77.76 -0.4826 48 22 3 0 0 0 0.039985 4 42690 42690;42698;42706;42805 49.933 6.0747 1 8700800 679 2038 482 488 750;751;752;753 750 -0.02190477027943416 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2319030761719 2 470.232168 938.449782 -0.72508 -0.00034095 -0.019434 -9.1384E-06 -0.74451 -0.00035009 470.23213072975483 77.987 0.30085 77.505 77.459 77.76 -0.4826 34 21 2 0 0 0 0.16226 1 42712 42712 26.884 5.137 1 3032000 680 2038 482 488 754 754 -0.02190477027943416 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.454345703125 1 939.457059 938.449782 -0.21329 -0.00020038 0.74755 0.00070229 0.53426 0.00050191 939.4577029810829 85.258 0.41527 79.082 78.877 79.292 -6.1757 46 26 2 0 0 0 0.015445 2 56173 56045;56173 68.081 11.904 1 24473000 681 2038 482 488 755;756 756 -0.02190477027943416 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2329406738281 2 470.232168 938.449782 0.010352 4.8678E-06 0.1829 8.6005E-05 0.19325 9.0873E-05 470.23228996944516 85.259 0.43819 79.084 78.82 79.259 -6.1757 45 27 2 0 0 0 0.047196 2 56191 56053;56191 46.021 13.715 1 21851000 682 2038 482 488 757;758 758 -0.02190477027943416 AGDFGNIFV 9 Unmodified _AGDFGNIFV_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;ENST00000372981.1_1_X:99942062-99942296:-|nuORF ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.232168 938.449782 0.38394 0.00018054 -1.253 -0.00058921 -0.86908 -0.00040867 470.23137589010287 77.617 0.2058 77.617 77.544 77.75 0 0.05635 -0.00051922 NaN 26.884 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1451400 683 2038 482 488 -0.02190477027943416 AGDLLIEVY 9 Unmodified _AGDLLIEVY_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7666625976562 2 496.768583 991.522613 0.30283 0.00015044 -0.61008 -0.00030307 -0.30726 -0.00015263 496.76819687615745 56.774 0.61298 56.774 56.543 57.156 0 77 26 4 0 0 0 0.087258 1 31516 31516 36.044 1.9418 1 40641000 684 682 483 489 759 759 0.026512319748121627 AGDVEALQ 8 Unmodified _AGDVEALQ_ 0 0 0 ENSG00000166183|ENST00000551177|ASPG;nc|ENSG00000166183|Q86U10-3|ASPG ENSG00000166183|ENST00000551177|ASPG ENSG00000166183|ENST00000551177|ASPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3841552734375 1 802.394124 801.386848 0.0072843 5.8449E-06 -2.7695 -0.0022223 -2.7623 -0.0022164 802.3919714692918 51.737 0.2833 51.737 51.54 51.823 0 19 12 2 0 0 0 0.80232 1 28546 28546 5.2307 0.90143 1 1772100 685 7447 484 490 760 760 -0.02179042815998855 AGDYDLQVGI 10 Unmodified _AGDYDLQVGI_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2568969726562 2 525.758746 1049.50294 0.45431 0.00023886 -1.2259 -0.00064455 -0.77164 -0.00040569 525.7580198018287 63.131 0.32955 63.131 62.942 63.272 0 28 13 3 0 0 0 0.6606 1 35165 35165 7.2892 0 1 1717100 686 9754 485 491 761 761 -0.01983144035943951 AGEELFFDYRY 11 Unmodified _AGEELFFDYRY_ 0 0 0 nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000586714.1_1_17:40854552-40854989:-|nuORF nc|ENSG00000108799|Q92800-5|EZH1 nc|ENSG00000108799|Q92800-5|EZH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.3199462890625 2 705.322242 1408.62993 NaN NaN NaN NaN NaN NaN NaN 55.839 1 55.839 55.339 56.339 0 0 0 0 0.91348 1 31034 31034 6.6304 0.89852 1 687 2607 486 492 762 762 -0.05803842881618948 AGEELQTFH 9 Unmodified _AGEELQTFH_ 0 0 0 ENSG00000154134|ENST00000397801|ROBO3;ENST00000543966.5_1_11:124747451-124748526:+|nuORF;ENST00000534598.5_1_11:124747729-124748095:+|nuORF;ENST00000527245.5_1_11:124747729-124748693:+|nuORF ENSG00000154134|ENST00000397801|ROBO3 ENSG00000154134|ENST00000397801|ROBO3 MSMS AL20221201_MKP_PDAC_01 4 516.242431640625 2 516.243264 1030.47197 NaN NaN NaN NaN NaN NaN NaN 17.341 1 14.754 14.254 15.254 -2.5866 0 0 0 0.46757 1 9059 9059 16.942 1.0951 1 688 6300 487 493 763 763 -0.042042973502020686 AGEGESEPPEH 11 Unmodified _AGEGESEPPEH_ 0 0 0 ENST00000389857.10_1_14:91782129-91787614:-|nuORF ENST00000389857.10_1_14:91782129-91787614:-|nuORF ENST00000389857.10_1_14:91782129-91787614:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7752075195312 2 569.736 1137.45745 0.45259 0.00025786 3.4115 0.0019436 3.8641 0.0022015 569.7385426964395 66.238 0.19493 66.238 66.153 66.348 0 11 8 2 0 0 0 0.30139 1 36905 36905 5.7319 1.4026 1 620180 689 12649 488 494 764 764 -0.10578414289011562 AGEGLRTLVL 10 Unmodified _AGEGLRTLVL_ 0 0 0 ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8092651367188 2 514.808574 1027.60259 0.17319 8.916E-05 0.034963 1.7999E-05 0.20815 0.00010716 514.8086711134533 55.69 0.2289 55.212 55.091 55.32 -0.47798 19 10 2 0 0 0 0.38092 1 30196 30196 22.736 2.2827 1 1209100 690 5522 489 495 765 765 0.0898971836866167 AGESGAPVYK 10 Unmodified _AGESGAPVYK_ 0 0 0 REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1 REV__nc|ENSG00000142765|Q8IYJ3-2|SYTL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7476806640625 2 489.748182 977.481811 NaN NaN NaN NaN NaN NaN NaN 26.464 1 26.464 25.964 26.964 0 0 0 0 0.7417 1 13605 13605 14.838 1.3304 1 + 691 20593 490 496 766 766 -0.007831093448089632 AGEWAWDRWC 10 Unmodified _AGEWAWDRWC_ 0 0 0 REV__ENST00000541638.5_1_15:74275513-74275969:-|nuORF REV__ENST00000541638.5_1_15:74275513-74275969:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.1829528808594 3 427.181952 1278.52403 1.2 0.00051262 0.42368 0.00018099 1.6237 0.00069361 427.18190088808126 92.244 1.0992 86.069 85.351 86.45 -6.1757 229 64 5 0 0 0 0.71123 1 61054 61054 0.69767 0.19171 1 45844000 + 692 28600 491 497 767 767 -0.1040945720808395 AGEYSRQL 8 Unmodified _AGEYSRQL_ 0 0 0 ENSG00000133020|ENST00000403437|MYH8 ENSG00000133020|ENST00000403437|MYH8 ENSG00000133020|ENST00000403437|MYH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.2333068847656 2 462.232699 922.450845 NaN NaN NaN NaN NaN NaN NaN 24.088 1 24.086 23.586 24.586 -0.0016766 0 0 0 0.65904 1 12302 12302 30.225 3.3412 1 693 4477 492 498 768 768 -0.013482626590416658 AGFAGDDAPR 10 Unmodified _AGFAGDDAPR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7281188964844 2 488.727781 975.441008 NaN NaN NaN NaN NaN NaN NaN 22.08 1 22.08 21.58 22.58 0 0 0 0 0.90788 1 11219 11219 7.609 0.88579 1 694 1163;13679;9641;9849;5538 493 499 769 769 -0.04769450664434771 AGFAGDDAPR 10 Unmodified _AGFAGDDAPR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7278442382812 2 488.727781 975.441008 NaN NaN NaN NaN NaN NaN NaN 22.263 1 22.263 21.763 22.763 0 0 0 0 0.75165 1 11316 11316 14.405 4.222 1 695 1163;13679;9641;9849;5538 493 499 770 770 -0.04769450664434771 AGFAGDDAPR 10 Unmodified _AGFAGDDAPR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.728271484375 2 488.727781 975.441008 -0.013292 -6.496E-06 1.1597 0.00056678 1.1464 0.00056028 488.7282643990839 22.117 0.26624 22.14 22.006 22.273 0.022896 17 11 2 0 0 0 0.30444 1 11225 11225 27.223 16.399 1 478490 696 1163;13679;9641;9849;5538 493 499 771 771 -0.04769450664434771 AGFAGDDAPR 10 Unmodified _AGFAGDDAPR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7285461425781 2 488.727781 975.441008 0.39923 0.00019512 1.5947 0.00077936 1.9939 0.00097448 488.72814317789965 22.066 0.2167 22.08 21.965 22.182 0.013796 12 8 2 0 0 0 0.6192 1 11332 11332 10.151 2.8613 1 577710 697 1163;13679;9641;9849;5538 493 499 772 772 -0.04769450664434771 AGFCSSRSWSC 11 Unmodified _AGFCSSRSWSC_ 0 0 0 ENST00000348367.8_1_10:113943454-113943517:-|nuORF ENST00000348367.8_1_10:113943454-113943517:-|nuORF ENST00000348367.8_1_10:113943454-113943517:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.4955139160156 3 397.495431 1189.46446 -0.3899 -0.00015498 0.73254 0.00029118 0.34265 0.0001362 397.4957934968697 41.704 0.27257 41.704 41.573 41.846 0 39 13 4 0 0 0 0.71341 1 22502 22502 1.2148 0 1 10297000 698 12039 494 500 773 773 -0.12269096213753983 AGFDKYKY 8 Unmodified _AGFDKYKY_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2478332519531 2 496.247818 990.481082 NaN NaN NaN NaN NaN NaN NaN 64.863 1 64.863 64.363 65.363 0 0 0 0 0.97444 1 36178 36178 2.8892 0 1 699 5002 495 501 774 774 -0.014539039938654241 AGFEDKSAY 9 Unmodified _AGFEDKSAY_ 0 0 0 ENST00000609835.5_1_20:3193963-3199407:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA ENST00000609835.5_1_20:3193963-3199407:+|nuORF ENST00000609835.5_1_20:3193963-3199407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2249755859375 2 494.224539 986.434526 -0.40693 -0.00020111 -0.90302 -0.0004463 -1.31 -0.00064741 494.2241105356637 25.944 0.22816 25.944 25.819 26.047 0 17 10 2 0 0 0 0.2143 1 13309 13309 21.747 4.8044 1 833050 700 3906 496 502 775 775 -0.05923388615804015 AGFQPHKGS 9 Unmodified _AGFQPHKGS_ 0 0 0 ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1 ENST00000397656.8_1_12:111066004-111085694:+|nuORF ENST00000397656.8_1_12:111066004-111085694:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.4700317382812 1 928.463541 927.456264 1.0782 0.001001 4.3165 0.0040078 5.3947 0.0050088 928.4678785055468 70.515 0.19147 70.551 70.444 70.636 0.035507 11 8 2 0 0 0 0.34999 1 38808 38808 14.838 0.25658 1 822590 701 10333 497 503 776 776 -0.010365390765628035 AGGASLQYY 9 Unmodified _AGGASLQYY_ 0 0 0 REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.221923828125 2 465.2218 928.429047 0.1136 5.2848E-05 0.53988 0.00025116 0.65348 0.00030401 465.22206872527113 44.716 0.29646 44.716 44.492 44.788 0 29 15 3 0 0 0 0.16776 1 24287 24287 26.341 6.9023 1 32367000 + 702 25945 498 504 777 777 -0.03803067407625349 AGGASLQYY 9 Unmodified _AGGASLQYY_ 0 0 0 REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2226257324219 2 465.2218 928.429047 NaN NaN NaN NaN NaN NaN NaN 44.808 1 44.808 44.308 45.308 0 0 0 0 0.27711 1 24397 24397 26.341 11.503 1 + 703 25945 498 504 778 778 -0.03803067407625349 AGGASLQYY 9 Unmodified _AGGASLQYY_ 0 0 0 REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2220458984375 2 465.2218 928.429047 -0.21422 -9.9661E-05 0.77503 0.00036056 0.56081 0.0002609 465.22201622263213 45.012 0.09906 44.688 44.601 44.7 -0.32425 7 4 2 0 0 0 0.25297 1 24031 24031 19.439 4.6007 1 13931000 + 704 25945 498 504 779 779 -0.03803067407625349 AGGASLQYY 9 Unmodified _AGGASLQYY_ 0 0 0 REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 465.2218 928.429047 0.1136 5.2848E-05 0.53988 0.00025116 0.65348 0.00030401 465.22206872527113 44.716 0.29646 44.716 44.492 44.788 0 0.014034 -0.00011231 NaN 26.341 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 32367000 + 705 25945 498 504 -0.03803067407625349 AGGASLQYY 9 Unmodified _AGGASLQYY_ 0 0 0 REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF REV__ENST00000361937.7_1_15:41350866-41352074:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 465.2218 928.429047 -0.21422 -9.9661E-05 0.77503 0.00036056 0.56081 0.0002609 465.22201622263213 45.012 0.09906 44.688 44.601 44.7 -0.32425 -0.014034 0.00010648 NaN 26.341 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 13931000 + 706 25945 498 504 -0.03803067407625349 AGGAWTGPGCW 11 Unmodified _AGGAWTGPGCW_ 0 0 0 ENSG00000213762|ENST00000396161|ZNF134 ENSG00000213762|ENST00000396161|ZNF134 ENSG00000213762|ENST00000396161|ZNF134 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7271118164062 2 531.726726 1061.4389 0.40272 0.00021414 0.79283 0.00042157 1.1956 0.00063571 531.7270489753887 88.31 0.48779 87.806 87.536 88.024 -0.50423 55 21 3 0 0 0 0.71341 1 48343 48343 2.9952 0.10602 1 6439600 707 10457 499 505 780 780 -0.08936202673862681 AGGIDLPAI 9 Unmodified _AGGIDLPAI_ 0 0 0 REV__ENSG00000164692|ENST00000297268|COL1A2 REV__ENSG00000164692|ENST00000297268|COL1A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.7373352050781 2 413.737086 825.459619 0.3628 0.0001501 -1.1206 -0.00046365 -0.75783 -0.00031354 413.7372421660494 53.756 0.30625 53.756 53.685 53.991 0 21 13 2 0 0 0 0.21798 1 29919 29919 2.3027 0 1 1878700 + 708 21941 500 506 781 781 0.03990710977404888 AGGPTRKF 8 Unmodified _AGGPTRKF_ 0 0 0 REV__ENSG00000117593|ENST00000649689|DARS2 REV__ENSG00000117593|ENST00000649689|DARS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.234619140625 2 417.235045 832.455536 NaN NaN NaN NaN NaN NaN NaN 38.917 1 38.929 38.429 39.429 0.011452 0 0 0 0.88073 1 20714 20714 19.439 5.9311 1 + 709 19115 501 507 782 782 0.032606662743773995 AGGQLPFSK 9 Unmodified _AGGQLPFSK_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7479553222656 2 452.747985 903.481417 0.16814 7.6126E-05 -1.7961 -0.00081318 -1.628 -0.00073706 452.74785579776506 32.061 0.22557 32.091 31.969 32.194 0.029835 19 9 3 0 0 0 0.095405 1 16819 16819 34.102 1.797 1 1969300 710 4799 502 508 783 783 0.025815157259899024 AGGQLPFSK 9 Unmodified _AGGQLPFSK_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 452.747985 903.481417 -0.16744 -7.5807E-05 0.95047 0.00043032 0.78303 0.00035452 452.7483959887662 32.236 0.25905 32.107 31.94 32.199 -0.12915 -0.04963 0.000445 NaN 34.102 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3067900 711 4799 502 508 0.025815157259899024 AGGREREEWK 10 Unmodified _AGGREREEWK_ 0 0 0 ENST00000542351.5_2_12:6788321-6797908:-|nuORF ENST00000542351.5_2_12:6788321-6797908:-|nuORF ENST00000542351.5_2_12:6788321-6797908:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3046875 2 609.304718 1216.59488 -0.48113 -0.00029316 -0.63493 -0.00038687 -1.1161 -0.00068002 609.3042303450989 25.664 0.31229 25.664 25.507 25.819 0 26 14 3 0 0 0 0.5933 1 13161 13161 11.495 3.8858 1 2420600 712 15057 503 509 784 784 -0.004750408989366406 AGGRGRPL 8 Unmodified _AGGRGRPL_ 0 0 0 REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.5624389648438 2 392.232836 782.45112 1.4708 0.00057688 -0.58144 -0.00022806 0.88933 0.00034882 392.2326963838844 21.472 0.27995 18.738 18.62 18.9 -2.7348 36 26 2 0 0 0 8.7369 1 11484 11484 5.7604 0 1 4096000 + 713 24796 504 510 785 785 0.051192018514484516 AGGRLGNLR 9 Unmodified _AGGRLGNLR_ 0 0 0 ENST00000358201.8_2_16:28936491-28936821:-|nuORF ENST00000358201.8_2_16:28936491-28936821:-|nuORF ENST00000358201.8_2_16:28936491-28936821:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2696533203125 2 457.26995 912.525347 0.09257 4.233E-05 -0.40281 -0.00018419 -0.31024 -0.00014186 457.2700764862314 32.298 0.11052 32.328 32.279 32.389 0.029743 5 4 2 0 0 0 0.39863 1 16978 16978 12.532 0 1 1198300 714 12125 505 511 786 786 0.06558544942970457 AGGSFSDF 8 Unmodified _AGGSFSDF_ 0 0 0 ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1666259765625 2 394.166493 786.318434 NaN NaN NaN NaN NaN NaN NaN 44.133 1 44.133 43.633 44.633 0 0 0 0 0.97444 1 24002 24002 2.8892 0 1 715 15884 506 512 787 787 -0.0832728739585491 AGGSGYSNGG 10 Unmodified _AGGSGYSNGG_ 0 0 0 REV__ENST00000587928.5_1_19:10794459-10799985:+|nuORF REV__ENST00000587928.5_1_19:10794459-10799985:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.3316650390625 1 826.332586 825.32531 0.22314 0.00018438 3.9545 0.0032677 4.1776 0.0034521 826.3367903745709 74.492 0.3077 74.492 74.318 74.626 0 18 13 2 0 0 0 0.69377 1 41436 41436 3.5965 0.31518 1 717290 + 716 19662 507 513 788 788 -0.09433974515275168 AGGVPTIFST 10 Unmodified _AGGVPTIFST_ 0 0 0 REV__ENSG00000168658|ENST00000477737|VWA3B REV__ENSG00000168658|ENST00000477737|VWA3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2528686523438 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 66.422 1 66.422 65.922 66.922 0 0 0 0 0.92825 1 37047 37047 6.7232 0.36906 1 + 717 22330 508 514 789 789 0.01534078660574778 AGHDTTTT 8 Unmodified _AGHDTTTT_ 0 0 0 nc|ENSG00000290456|Q8N1L4|CYP4Z2P nc|ENSG00000290456|Q8N1L4|CYP4Z2P nc|ENSG00000290456|Q8N1L4|CYP4Z2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1797790527344 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 1.8636 1 1.8466 1.3466 2.3466 -0.017019 0 0 0 0.97444 1 958 958 0.69038 0.69038 1 718 16632 509 515 790 790 -0.06336803855481321 AGHFASVY 8 Unmodified _AGHFASVY_ 0 0 0 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4057006835938 1 851.404629 850.397353 -0.013594 -1.1574E-05 -0.71792 -0.00061124 -0.73152 -0.00062282 851.4049708765561 37.836 0.20161 37.836 37.724 37.925 0 15 9 2 0 0 0 0.38711 1 20155 20155 45.75 9.7058 1 1566400 719 469 510 516 791 791 -0.03383015370911835 AGHGGPGRDG 10 Unmodified _AGHGGPGRDG_ 0 0 0 REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7055053710938 2 440.70464 879.394727 NaN NaN NaN NaN NaN NaN NaN 18.463 1 18.463 17.963 18.963 0 0 0 0 0.64375 1 9181 9181 19.257 1.122 1 + 720 27854 511 517 792 792 -0.04979470775856498 AGHHKEDEL 9 Unmodified _AGHHKEDEL_ 0 0 0 REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2 REV__nc|ENSG00000165887|Q9GZV1-2|ANKRD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2717895507812 2 518.246338 1034.47812 0.93601 0.00048508 2.7675 0.0014343 3.7035 0.0019193 518.2478172170066 54.773 0.37215 54.773 54.44 54.812 0 18 15 2 0 0 0 0.20528 1 30298 30298 8.5933 0.68312 1 1249500 + 721 22058 512 518 793 793 -0.03773779118660059 AGHHMLQS 8 Unmodified _AGHHMLQS_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MSMS AL20221201_MKP_PDAC_01 4 440.8811645507812 2 440.708337 879.40212 NaN NaN NaN NaN NaN NaN NaN 19.737 1 17.081 16.581 17.581 -2.6564 0 0 0 0.90769 1 10479 10479 18.135 2.2878 1 + 722 21053 513 519 794 794 -0.04240454499779389 AGHINPLIIY 10 Unmodified _AGHINPLIIY_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8190307617188 2 555.818941 1109.62333 0.62741 0.00034873 -0.14862 -8.2606E-05 0.47879 0.00026612 555.8187909970233 52.055 0.33208 51.622 51.437 51.77 -0.43367 56 16 5 0 0 0 0.037795 1 28056 28056 64.236 13.381 1 61393000 723 8394 514 520 795 795 0.07290308748338248 AGHINPLIIY 10 Unmodified _AGHINPLIIY_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8182983398438 2 555.818941 1109.62333 0.26788 0.00014889 0.92007 0.00051139 1.188 0.00066029 555.8193778619569 51.713 0.32002 51.655 51.494 51.814 -0.058914 49 15 4 0 0 0 0.037795 2 27957 27957;28064 64.236 6.765 1 27101000 724 8394 514 520 796;797 796 0.07290308748338248 AGHINPLIIY 10 Unmodified _AGHINPLIIY_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8193969726562 2 555.818941 1109.62333 1.0348 0.00057515 0.50923 0.00028304 1.544 0.00085819 555.8191062183924 57.67 0.49743 51.643 51.372 51.87 -6.0275 64 27 3 0 0 0 0.051739 2 37039 36759;37039 57.471 6.6163 1 315010000 725 8394 514 520 798;799 799 0.07290308748338248 AGHKPYEYHE 10 Unmodified _AGHKPYEYHE_ 0 0 0 ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799 ENSG00000196466|ENST00000430385|ZNF799 ENSG00000196466|ENST00000430385|ZNF799 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.8573303222656 3 410.856122 1229.54654 NaN NaN NaN NaN NaN NaN NaN 15.104 1 15.104 14.604 15.604 0 0 0 0 1.0019 1 7246 7246 0.15932 0 1 726 9823 515 521 800 800 -0.05905534538806023 AGHKPYEYHE 10 Unmodified _AGHKPYEYHE_ 0 0 0 ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799 ENSG00000196466|ENST00000430385|ZNF799 ENSG00000196466|ENST00000430385|ZNF799 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1917724609375 3 410.856122 1229.54654 NaN NaN NaN NaN NaN NaN NaN 15.138 1 15.138 14.638 15.638 0 0 0 0 0.98914 1 7267 7267 0.77653 0 1 727 9823 515 521 801 801 -0.05905534538806023 AGHRHRRR 8 Unmodified _AGHRHRRR_ 0 0 0 REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.303466796875 2 523.302981 1044.59141 0.3298 0.00017258 1.1584 0.00060619 1.4882 0.00077878 523.3035998656626 91.671 0.42733 91.19 90.902 91.33 -0.48092 48 27 2 0 0 0 0.80975 1 50076 50076 0.79363 0.10326 1 1581400 + 728 16752 516 522 802 802 0.07089798628408062 AGINYGGHV 9 Unmodified _AGINYGGHV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.22314453125 2 444.222134 886.429715 0.33059 0.00014686 1.7752 0.00078857 2.1058 0.00093543 444.22279509961993 49.051 0.33987 48.679 48.48 48.82 -0.37172 24 16 2 0 0 0 0.18465 1 26369 26369 24.674 3.8027 1 2127700 729 9210 517 523 803 803 -0.018042279678979867 AGINYGGHV 9 Unmodified _AGINYGGHV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 444.222134 886.429715 0.61482 0.00027312 1.4863 0.00066023 2.1011 0.00093335 444.2225938094376 48.678 0.37586 48.634 48.415 48.791 -0.04369 -0.024298 -0.00029144 NaN 24.674 52 18 4 NaN NaN NaN NaN 0 NaN NaN 0 13482000 730 9210 517 523 -0.018042279678979867 AGIPSECD 8 Unmodified _AGIPSECD_ 0 0 0 ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF ENSG00000218336|ENST00000511685|TENM3 ENSG00000218336|ENST00000511685|TENM3 MSMS AL20221201_MKP_PDAC_01 4 396.2188720703125 2 396.165636 790.316719 NaN NaN NaN NaN NaN NaN NaN 24.832 1 21.948 21.448 22.448 -2.8831 0 0 0 0.97444 1 13544 13544 2.8892 0 1 731 10544 518 524 804 804 -0.08682664476123136 AGKLAPAN 8 Unmodified _AGKLAPAN_ 0 0 0 ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.4301147460938 1 741.425365 740.418088 4.1732 0.0030941 0.14617 0.00010837 4.3194 0.0032025 741.4251421258172 98.691 0.27028 98.663 98.506 98.776 -0.028282 15 9 2 0 0 0 0.79669 1 54814 54814 8.5933 2.2392 1 4348600 732 7816 519 525 805 805 0.03749575008748707 AGKRFDTDNRG 11 Unmodified _AGKRFDTDNRG_ 0 0 0 ENST00000380249.5_1_9:20765062-20770071:+|nuORF ENST00000380249.5_1_9:20765062-20770071:+|nuORF ENST00000380249.5_1_9:20765062-20770071:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7166137695312 3 412.874175 1235.6007 NaN NaN NaN NaN NaN NaN NaN 15.652 1 15.652 15.152 16.152 0 0 0 0 0.94165 1 7558 7558 0.45452 0.1855 1 733 12592 520 526 806 806 -0.00767942387255971 AGKSFLRF 8 Unmodified _AGKSFLRF_ 0 0 0 REV__nc|ENSG00000067842|Q16720-8|ATP2B3 REV__nc|ENSG00000067842|Q16720-8|ATP2B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2670288085938 2 463.266345 924.518136 0.38321 0.00017753 -0.14588 -6.7582E-05 0.23733 0.00010995 463.2661266598939 40.882 0.25845 40.881 40.731 40.989 -0.0017929 15 12 2 0 0 0 0.58902 1 21834 21834 26.884 7.4447 1 2312700 + 734 17427 521 527 807 807 0.05285812342560803 AGKVPVAA 8 Unmodified _AGKVPVAA_ 0 0 0 REV__ENST00000392859.7_1_11:118443126-118453898:+|nuORF REV__ENST00000392859.7_1_11:118443126-118453898:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.7225646972656 2 356.721239 711.427924 NaN NaN NaN NaN NaN NaN NaN 60.887 1 60.397 59.897 60.897 -0.48932 0 0 0 0.97444 1 33160 33160 2.8892 0 1 + 735 26407 522 528 808 808 0.06066763014132448 AGLDDQQLQI 10 Unmodified _AGLDDQQLQI_ 0 0 0 REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1 REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7819213867188 2 550.782753 1099.55095 0.99827 0.00054983 -1.4531 -0.00080032 -0.45478 -0.00025048 550.7819106499005 61.658 0.41499 55.482 55.367 55.782 -6.1757 38 21 2 0 0 0 0.38092 1 39917 39917 22.736 3.4793 1 30158000 + 736 23866 523 529 809 809 0.005159298840908377 AGLDDQQLQI 10 Unmodified _AGLDDQQLQI_ 0 0 0 REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1 REV__nc|ENSG00000196739|Q8IZC6-2|COL27A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.312744140625 2 550.782753 1099.55095 0.99827 0.00054983 -1.4531 -0.00080032 -0.45478 -0.00025048 550.7819106499005 61.658 0.41499 55.482 55.367 55.782 -6.1757 38 21 2 0 0 0 0.14716 1 39806 39806 34.402 0 1 30158000 + 737 23866 523 529 810 810 0.005159298840908377 AGLFGGRI 8 Unmodified _AGLFGGRI_ 0 0 0 REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF REV__ENST00000229340.9_1_12:120533179-120533533:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.7328186035156 2 395.732138 789.449723 1.3733 0.00054345 0.35185 0.00013924 1.7251 0.00068269 395.7321405502918 47.844 0.52209 42.611 42.348 42.87 -5.2339 80 31 3 0 0 0 0.44122 2 29682 29682;29823 40.449 14.107 1 80151000 + 738 24806 524 530 811;812 811 0.046575677626947254 AGLFSYSK 8 Unmodified _AGLFSYSK_ 0 0 0 REV__ENST00000358064.3_1_12:14922064-14922100:-|nuORF REV__ENST00000358064.3_1_12:14922064-14922100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7290954589844 2 436.729261 871.443968 0.45066 0.00019682 0.17348 7.5764E-05 0.62414 0.00027258 436.7292400505463 71.281 0.29156 70.804 70.547 70.839 -0.47735 15 12 2 0 0 0 0.78849 1 39023 39023 9.3474 0.75416 1 532980 + 739 25867 525 531 813 813 0.00310424460383274 AGLICQAGIGF 11 Unmodified _AGLICQAGIGF_ 0 0 0 ENST00000310483.10_2_1:153936131-153940173:-|nuORF ENST00000310483.10_2_1:153936131-153940173:-|nuORF ENST00000310483.10_2_1:153936131-153940173:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.778076171875 2 525.276052 1048.53755 0.03957 2.0785E-05 -1.1788 -0.00061917 -1.1392 -0.00059839 525.2753759088724 72.374 0.33795 72.415 72.256 72.594 0.041725 41 15 4 0 0 0 0.27972 1 39803 39803 18.146 1.2041 1 6791800 740 11680 526 532 814 814 0.015224005711615973 AGLKIRHG 8 Unmodified _AGLKIRHG_ 0 0 0 ENST00000546217.1_1_12:7079578-7079788:-|nuORF;ENST00000542294.1_1_12:7079337-7079788:-|nuORF;ENST00000543465.5_1_12:7078710-7079788:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2646789550781 2 426.264136 850.51372 0.77408 0.00032996 -0.70626 -0.00030106 0.067819 2.8909E-05 426.2638467550609 57.173 0.223 57.107 56.978 57.201 -0.066036 13 10 2 0 0 0 0.72953 1 31129 31129 14.582 8.8213 1 2565300 741 15056 527 533 815 815 0.08248347919652588 AGLKIRHG 8 Unmodified _AGLKIRHG_ 0 0 0 ENST00000546217.1_1_12:7079578-7079788:-|nuORF;ENST00000542294.1_1_12:7079337-7079788:-|nuORF;ENST00000543465.5_1_12:7078710-7079788:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2649841308594 2 426.264136 850.51372 NaN NaN NaN NaN NaN NaN NaN 46.011 1 45.983 45.483 46.483 -0.028011 0 0 0 0.95607 1 24741 24741 9.3474 4.1168 1 742 15056 527 533 816 816 0.08248347919652588 AGLKIRHG 8 Unmodified _AGLKIRHG_ 0 0 0 ENST00000546217.1_1_12:7079578-7079788:-|nuORF;ENST00000542294.1_1_12:7079337-7079788:-|nuORF;ENST00000543465.5_1_12:7078710-7079788:-|nuORF;ENST00000546111.5_1_12:7074850-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF ENST00000546217.1_1_12:7079578-7079788:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2648620605469 2 426.264136 850.51372 1.1227 0.00047855 0.26549 0.00011317 1.3882 0.00059172 426.2643602636982 91.043 0.48596 84.868 84.625 85.111 -6.1757 46 28 2 0 0 0 0.72953 1 60117 60117 14.582 5.9884 1 9432800 743 15056 527 533 817 817 0.08248347919652588 AGLLGALSLL 10 Unmodified _AGLLGALSLL_ 0 0 0 ENSG00000180929|ENST00000322241|GPR62 ENSG00000180929|ENST00000322241|GPR62 ENSG00000180929|ENST00000322241|GPR62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 927.5902099609375 1 927.587344 926.580068 0.40825 0.00037869 1.8548 0.0017205 2.263 0.0020991 927.589924698836 85.882 0.26561 85.381 85.229 85.495 -0.5015 15 10 2 0 0 0 0.57332 1 46989 46989 12.532 0 1 454230 744 8935 528 534 818 818 0.11384118971056978 AGLRIGVHF 9 Unmodified _AGLRIGVHF_ 0 0 0 ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2865295410156 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 40.258 1 40.263 39.763 40.763 0.0050545 0 0 0 0.84564 1 21461 21461 2.0598 1.2661 1 745 12651 529 535 819 819 0.07004903608174118 AGLSADFNY 9 Unmodified _AGLSADFNY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2196044921875 2 479.219257 956.423961 0.70767 0.00033913 -0.29241 -0.00014013 0.41527 0.000199 479.219134743192 28.798 0.16583 28.736 28.644 28.81 -0.062159 9 6 2 0 0 0 0.48152 1 14889 14889 8.5933 0 1 2577200 746 16379 530 536 820 820 -0.05599371270250231 AGLSADFNY 9 Unmodified _AGLSADFNY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 479.219257 956.423961 1.1104 0.00053211 0.19838 9.5067E-05 1.3088 0.00062718 479.21955588636473 32.438 0.26144 28.582 28.432 28.694 -3.8562 -0.12913 0.00022782 NaN 8.5933 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4239200 747 16379 530 536 -0.05599371270250231 AGLWSFLWFVG 11 Unmodified _AGLWSFLWFVG_ 0 0 0 ENST00000564642.1_1_16:2042626-2043070:+|nuORF ENST00000564642.1_1_16:2042626-2043070:+|nuORF ENST00000564642.1_1_16:2042626-2043070:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.224853515625 3 428.225486 1281.65463 NaN NaN NaN NaN NaN NaN NaN 17.941 1 17.941 17.441 18.441 0 0 0 0 0.94144 1 8883 8883 0.50596 0.17668 1 748 15390 531 537 821 821 0.02506881782369419 AGMYPWGF 8 Unmodified _AGMYPWGF_ 0 0 0 ENST00000527781.1_1_11:113186979-113196409:+|nuORF ENST00000527781.1_1_11:113186979-113196409:+|nuORF ENST00000527781.1_1_11:113186979-113196409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7051391601562 2 464.704731 927.39491 0.72552 0.00033715 2.4889 0.0011566 3.2144 0.0014938 464.7061523335543 61.206 0.22972 61.206 61.045 61.275 0 13 9 2 0 0 0 0.80624 1 34159 34159 2.8892 0 1 287060 749 14841 532 538 822 822 -0.07169187100214458 AGPAGLYLLL 10 Unmodified _AGPAGLYLLL_ 0 0 0 REV__ENSG00000163539|ENST00000682230|CLASP2 REV__ENSG00000163539|ENST00000682230|CLASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.297607421875 2 494.29731 986.580068 0.67893 0.00033559 -0.11621 -5.7443E-05 0.56272 0.00027815 494.2971979152788 84.828 0.3712 84.329 84.114 84.485 -0.49961 38 15 3 0 0 0 0.34789 2 46458 46354;46458 24.674 6.5389 1 2429300 + 750 21783 533 539 823;824 824 0.08624118971033568 AGPAGLYLLL 10 Unmodified _AGPAGLYLLL_ 0 0 0 REV__ENSG00000163539|ENST00000682230|CLASP2 REV__ENSG00000163539|ENST00000682230|CLASP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2979125976562 2 494.29731 986.580068 0.92383 0.00045665 -0.11797 -5.8315E-05 0.80586 0.00039833 494.2974628480354 92.341 0.90364 86.166 85.823 86.726 -6.1757 97 55 3 0 0 0 0.22102 1 60919 60919 32.117 1.8922 1 29991000 + 751 21783 533 539 825 825 0.08624118971033568 AGPAMNRL 8 Unmodified _AGPAMNRL_ 0 0 0 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2202453613281 2 415.22108 828.427607 NaN NaN NaN NaN NaN NaN NaN 55.815 1 55.815 55.315 56.315 0 0 0 0 0.97444 1 31020 31020 2.8892 0 1 + 752 20979 534 540 826 826 0.006530200226279703 AGPGDGPPEI 10 Unmodified _AGPGDGPPEI_ 0 0 0 nc|ENSG00000188176|Q2TAL5-2|SMTNL2;ENSG00000188176|ENST00000389313|SMTNL2 nc|ENSG00000188176|Q2TAL5-2|SMTNL2 nc|ENSG00000188176|Q2TAL5-2|SMTNL2 MSMS AL20221201_MKP_PDAC_01 4 455.2199401855469 2 455.219257 908.423961 NaN NaN NaN NaN NaN NaN NaN 40.565 1 36.036 35.536 36.536 -4.5294 0 0 0 0.91523 1 24240 24240 7.2892 0.56607 1 753 9636 535 541 827 827 -0.03391371270242871 AGPGKGRF 8 Unmodified _AGPGKGRF_ 0 0 0 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.222900390625 2 395.221937 788.429321 0.10008 3.9554E-05 2.4225 0.00095743 2.5226 0.00099699 395.2230340968318 39.063 0.34023 39.074 38.941 39.281 0.011452 35 15 3 0 0 0 0.80676 1 20823 20823 2.5775 1.7838 1 2167700 754 10737 536 542 828 828 0.026643971028875058 AGPGPCRQ 8 Unmodified _AGPGPCRQ_ 0 0 0 ENST00000524870.1_1_11:67816626-67816899:+|nuORF ENST00000524870.1_1_11:67816626-67816899:+|nuORF ENST00000524870.1_1_11:67816626-67816899:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1909790039062 2 393.18978 784.365007 NaN NaN NaN NaN NaN NaN NaN 53.576 1 53.512 53.012 54.012 -0.063423 0 0 0 0.97444 1 29066 29066 5.2307 0.47466 1 755 14787 537 543 829 829 -0.035801260455627926 AGPGSLLPPQL 11 Unmodified _AGPGSLLPPQL_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.303466796875 2 525.303124 1048.5917 0.74166 0.0003896 0.71225 0.00037415 1.4539 0.00076374 525.3031893687394 57.642 0.21752 57.576 57.458 57.675 -0.066036 21 10 3 0 0 0 0.58219 1 31401 31401 12.241 2.1667 1 1754900 756 2358 538 544 830 830 0.06934315994362805 AGPGTALD 8 Unmodified _AGPGTALD_ 0 0 0 ENST00000593422.5_1_19:49979699-49979837:+|nuORF ENST00000593422.5_1_19:49979699-49979837:+|nuORF ENST00000593422.5_1_19:49979699-49979837:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.347900390625 1 701.346446 700.339169 0.76548 0.00053687 0.15962 0.00011195 0.9251 0.00064882 701.346875146019 96.135 0.1452 89.959 89.862 90.007 -6.1757 12 8 2 0 0 0 0.67481 1 63719 63719 19.439 4.8573 1 5907500 757 15735 539 545 831 831 -0.022986970162037323 AGPHLPAA 8 Unmodified _AGPHLPAA_ 0 0 0 nc|ENSG00000189077|Q9BXJ8-2|TMEM120A nc|ENSG00000189077|Q9BXJ8-2|TMEM120A nc|ENSG00000189077|Q9BXJ8-2|TMEM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.20263671875 2 367.203213 732.391873 -0.58117 -0.00021341 -0.041083 -1.5086E-05 -0.62226 -0.00022849 367.2031889985065 28.706 0.17868 28.706 28.641 28.82 0 13 8 2 0 0 0 0.80624 1 14898 14898 2.8892 0 1 1126400 758 16468 540 546 832 832 0.014973058372675041 AGPLHPDLF 9 Unmodified _AGPLHPDLF_ 0 0 0 REV__ENST00000272117.7_1_1:226821425-226821563:-|nuORF REV__ENST00000272117.7_1_1:226821425-226821563:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7550659179688 2 483.75581 965.497067 0.75325 0.00036439 -0.9327 -0.0004512 -0.17946 -8.6813E-05 483.75548318672344 62.542 0.26797 62.055 61.915 62.183 -0.48764 19 12 2 0 0 0 0.25297 1 34075 34075 19.439 1.304 1 2545600 + 759 25144 541 547 833 833 0.012938022430375895 AGPPASPTL 9 Unmodified _AGPPASPTL_ 0 0 0 ENSG00000126467|ENST00000246801|TSKS ENSG00000126467|ENST00000246801|TSKS ENSG00000126467|ENST00000246801|TSKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4371948242188 1 810.435595 809.428318 -0.05329 -4.3188E-05 0.43764 0.00035468 0.38435 0.00031149 810.4360835562109 37.738 0.26015 37.738 37.586 37.846 0 18 12 2 0 0 0 0.2143 1 20069 20069 21.747 3.6003 1 1014300 760 3953 542 548 834 834 0.015981379433242182 AGPPETYL 8 Unmodified _AGPPETYL_ 0 0 0 REV__ENSG00000184675|ENST00000374869|AMER1 REV__ENSG00000184675|ENST00000374869|AMER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2120056152344 2 424.213443 846.412334 NaN NaN NaN NaN NaN NaN NaN 33.302 1 33.302 32.802 33.802 0 0 0 0 0.9249 1 17451 17451 15.768 4.6538 1 + 761 23435 543 549 835 835 -0.017015682935834775 AGPPETYL 8 Unmodified _AGPPETYL_ 0 0 0 REV__ENSG00000184675|ENST00000374869|AMER1 REV__ENSG00000184675|ENST00000374869|AMER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2118225097656 2 424.213443 846.412334 NaN NaN NaN NaN NaN NaN NaN 33.842 1 33.842 33.342 34.342 0 0 0 0 0.95201 1 17784 17784 10.183 4.423 1 + 762 23435 543 549 836 836 -0.017015682935834775 AGPPETYL 8 Unmodified _AGPPETYL_ 0 0 0 REV__ENSG00000184675|ENST00000374869|AMER1 REV__ENSG00000184675|ENST00000374869|AMER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2119445800781 2 424.213443 846.412334 NaN NaN NaN NaN NaN NaN NaN 34.044 1 34.044 33.544 34.544 0 0 0 0 0.95201 1 17904 17904 10.183 4.423 1 + 763 23435 543 549 837 837 -0.017015682935834775 AGPQRLWL 8 Unmodified _AGPQRLWL_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7716064453125 2 470.771794 939.529036 NaN NaN NaN NaN NaN NaN NaN 36.547 1 36.569 36.069 37.069 0.021545 0 0 0 0.97348 1 19366 19366 5.7604 0.52976 1 764 14644 544 550 838 838 0.0568521471685699 AGPRCVCL 8 Unmodified _AGPRCVCL_ 0 0 0 REV__ENSG00000166897|ENST00000402918|ELFN2 REV__ENSG00000166897|ENST00000402918|ELFN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.7058715820312 2 409.704208 817.393864 NaN NaN NaN NaN NaN NaN NaN 59.681 1 59.681 59.181 60.181 0 0 0 0 0.95201 1 33262 33262 10.183 2.2732 1 + 765 22164 545 551 839 839 -0.022137247407840732 AGPRGQVQL 9 Unmodified _AGPRGQVQL_ 0 0 0 REV__ENSG00000127663|ENST00000159111|KDM4B REV__ENSG00000127663|ENST00000159111|KDM4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2640380859375 2 463.264333 924.514114 0.007966 3.6903E-06 0.66315 0.00030721 0.67112 0.0003109 463.2643632119592 28.811 0.17911 28.811 28.704 28.883 0 10 8 2 0 0 0 0.28047 1 14932 14932 18.135 3.5533 1 1046000 + 766 19588 546 552 840 840 0.048837228488423534 AGPRQPLGVW 10 Unmodified _AGPRQPLGVW_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MSMS AL20221201_MKP_PDAC_01 4 360.8689270019531 3 360.869814 1079.58761 NaN NaN NaN NaN NaN NaN NaN 17.397 1 14.81 14.31 15.31 -2.5866 0 0 0 0.8634 1 9092 9092 9.544 1.5986 1 767 1756 547 553 841 841 0.05100271291325953 AGPSALLTCL 10 Unmodified _AGPSALLTCL_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2557983398438 2 473.257328 944.500103 0.17498 8.2812E-05 -2.6034 -0.0012321 -2.4284 -0.0011492 473.25596642728203 65.716 0.24834 65.232 65.041 65.289 -0.48428 18 10 2 0 0 0 0.60623 1 35857 35857 10.824 2.2306 1 784310 + 768 21439 548 554 842 842 0.025633093055375866 AGPSALLTCL 10 Unmodified _AGPSALLTCL_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.257328 944.500103 0.17498 8.2812E-05 -2.6034 -0.0012321 -2.4284 -0.0011492 473.25596642728203 65.716 0.24834 65.232 65.041 65.289 -0.48428 0 0 NaN 10.824 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 784310 + 769 21439 548 554 0.025633093055375866 AGPTLAFLQL 10 Unmodified _AGPTLAFLQL_ 0 0 0 ENST00000531045.1_1_11:65387367-65388337:+|nuORF ENST00000531045.1_1_11:65387367-65388337:+|nuORF ENST00000531045.1_1_11:65387367-65388337:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.8012084960938 2 515.800217 1029.58588 0.25936 0.00013378 -0.12401 -6.3964E-05 0.13535 6.9815E-05 515.8003379803073 63.798 0.62402 63.798 63.567 64.191 0 59 25 3 0 0 0 0.35903 1 35522 35522 24.021 0.87215 1 3549400 770 14899 549 555 843 843 0.07227217482704873 AGPWVVSFDFP 11 Unmodified _AGPWVVSFDFP_ 0 0 0 ENST00000237536.8_2_20:35414273-35414927:-|nuORF ENST00000237536.8_2_20:35414273-35414927:-|nuORF ENST00000237536.8_2_20:35414273-35414927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8695068359375 3 407.86948 1220.58661 -0.40881 -0.00016674 0.27254 0.00011116 -0.13627 -5.5579E-05 407.869692636085 22.429 0.38802 22.429 22.245 22.633 0 62 18 4 0 0 0 0.73114 1 11444 11444 1.3296 1.3296 1 10564000 771 11091 550 556 844 844 -0.014859878682500494 AGPYGAPGAPG 11 Unmodified _AGPYGAPGAPG_ 0 0 0 REV__ENSG00000123500|ENST00000651968|COL10A1 REV__ENSG00000123500|ENST00000651968|COL10A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7236328125 2 457.721967 913.429381 NaN NaN NaN NaN NaN NaN NaN 23.29 1 23.29 22.79 23.79 0 0 0 0 0.9385 1 11867 11867 3.5965 0 1 + 772 19391 551 557 845 845 -0.03079647687764009 AGQAQAGAAQL 11 Unmodified _AGQAQAGAAQL_ 0 0 0 REV__ENSG00000172301|ENST00000302362|COPRS REV__ENSG00000172301|ENST00000302362|COPRS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.2886352539062 2 493.256705 984.498858 0.23081 0.00011385 1.2919 0.00063723 1.5227 0.00075108 493.2572097174967 24.027 0.16334 21.199 21.142 21.305 -2.8273 10 8 2 0 0 0 0.28226 1 13083 13083 12.241 0 1 1450600 + 773 22641 552 558 846 846 0.0059881126099980975 AGQREPAP 8 Unmodified _AGQREPAP_ 0 0 0 REV__ENSG00000129173|ENST00000250024|E2F8 REV__ENSG00000129173|ENST00000250024|E2F8 MSMS AL20221201_MKP_PDAC_01 4 413.2147521972656 2 413.214309 824.414065 NaN NaN NaN NaN NaN NaN NaN 71.99 1 65.814 65.314 66.314 -6.1757 0 0 0 0.93066 1 47098 47098 14.582 1.0738 1 + 774 19654 553 559 847 847 -0.005165144849570424 AGQSKLVP 8 Unmodified _AGQSKLVP_ 0 0 0 REV__ENST00000597296.1_1_19:57946891-57949523:+|nuORF REV__ENST00000597296.1_1_19:57946891-57949523:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2384338378906 2 400.237253 798.459953 1.676 0.00067082 0.53804 0.00021534 2.2141 0.00088616 400.23733307523054 105.23 0.15553 99.059 98.989 99.145 -6.1757 85 37 3 0 0 0 0.80722 1 70466 70466 2.3027 0 1 292830000 + 775 29224 554 560 848 848 0.05266130697293647 AGQWLYEEKPH 11 Unmodified _AGQWLYEEKPH_ 0 0 0 ENST00000509377.1_3_4:77172961-77230323:+|nuORF;nc|ENSG00000189157|Q6ZV65-2|FAM47E;nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E ENST00000509377.1_3_4:77172961-77230323:+|nuORF ENST00000509377.1_3_4:77172961-77230323:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2211303710938 3 453.222693 1356.64625 NaN NaN NaN NaN NaN NaN NaN 20.088 1 20.088 19.588 20.588 0 0 0 0 0.94148 1 10091 10091 1.4551 0.75745 1 776 9733 555 561 849 849 -0.017807169248726495 AGRATLHF 8 Unmodified _AGRATLHF_ 0 0 0 REV__ENST00000263734.4_1_2:46524728-46525058:+|nuORF REV__ENST00000263734.4_1_2:46524728-46525058:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7417602539062 2 436.740494 871.466435 0.83078 0.00036283 1.4234 0.00062165 2.2542 0.00098448 436.74123746107784 68.824 0.58801 68.849 68.479 69.067 0.025146 55 27 4 0 0 0 0.80311 1 37853 37853 4.756 1.8668 1 19595000 + 777 25050 556 562 850 850 0.02556068648652854 AGRFGQGVH 9 Unmodified _AGRFGQGVH_ 0 0 0 ENSG00000189001|ENST00000452271|SBSN ENSG00000189001|ENST00000452271|SBSN ENSG00000189001|ENST00000452271|SBSN MSMS AL20221201_MKP_PDAC_01 4 464.7401733398438 2 464.741025 927.467498 NaN NaN NaN NaN NaN NaN NaN 23.232 1 20.454 19.954 20.954 -2.7784 0 0 0 0.50124 1 12562 12562 15.847 1.0089 1 778 9719 557 563 851 851 0.0008628301757198642 AGRGPAQA 8 Unmodified _AGRGPAQA_ 0 0 0 REV__ENST00000536995.5_1_11:72532953-72533690:+|nuORF REV__ENST00000536995.5_1_11:72532953-72533690:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 727.3860473632812 1 727.384562 726.377286 0.88451 0.00064338 0.64303 0.00046773 1.5275 0.0011111 727.3856861115105 99.383 0.19518 93.208 93.159 93.354 -6.1757 14 12 2 0 0 0 0.80311 1 66178 66178 4.756 0 1 36740000 + 779 28543 558 564 852 852 0.0031523368913894956 AGRKWDLL 8 Unmodified _AGRKWDLL_ 0 0 0 ENST00000558688.5_1_15:80415103-80423647:+|nuORF ENST00000558688.5_1_15:80415103-80423647:+|nuORF ENST00000558688.5_1_15:80415103-80423647:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7758178710938 2 479.777077 957.5396 0.40624 0.00019491 -2.7787 -0.0013332 -2.3725 -0.0011382 479.776005379617 54.857 0.21746 54.789 54.681 54.899 -0.06834 16 10 2 0 0 0 0.24071 1 29818 29818 63.563 8.7893 1 1137300 780 15284 559 565 853 853 0.05913197371273782 AGRLGGWA 8 Unmodified _AGRLGGWA_ 0 0 0 REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2150268554688 2 394.214112 786.413671 NaN NaN NaN NaN NaN NaN NaN 49.497 1 49.448 48.948 49.948 -0.048824 0 0 0 0.97444 1 26744 26744 2.5775 0 1 + 781 27208 560 566 854 854 0.011921105858505143 AGSAILQK 8 Unmodified _AGSAILQK_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2375183105469 2 394.237253 786.459953 NaN NaN NaN NaN NaN NaN NaN 22.63 1 22.63 22.13 23.13 0 0 0 0 0.95973 1 11513 11513 8.5933 0.68312 1 782 7270 561 567 855 855 0.05818130697275592 AGSGEFYF 8 Unmodified _AGSGEFYF_ 0 0 0 REV__ENST00000535593.5_1_12:21668909-21669077:+|nuORF REV__ENST00000535593.5_1_12:21668909-21669077:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.1897888183594 2 439.189968 876.365384 NaN NaN NaN NaN NaN NaN NaN 77.444 1 76.961 76.461 77.461 -0.4826 0 0 0 0.97444 1 42396 42396 2.8892 0 1 + 783 28531 562 568 856 856 -0.07774427844708498 AGSPVPGLPG 10 Unmodified _AGSPVPGLPG_ 0 0 0 nc|ENSG00000197467|Q5TAT6-11|COL13A1;nc|ENSG00000197467|Q5TAT6-9|COL13A1;nc|ENSG00000197467|Q5TAT6-10|COL13A1;nc|ENSG00000197467|Q5TAT6-4|COL13A1;nc|ENSG00000197467|Q5TAT6-5|COL13A1 nc|ENSG00000197467|Q5TAT6-11|COL13A1 nc|ENSG00000197467|Q5TAT6-11|COL13A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4661254882812 1 851.462144 850.454868 0.78175 0.00066563 0.19002 0.0001618 0.97177 0.00082743 851.4621832941971 42.752 0.36102 42.752 42.586 42.947 0 43 18 3 0 0 0 0.50944 1 23178 23178 15.847 2.3393 1 8839500 784 16486 563 569 857 857 0.0236582683467077 AGSSSIPVI 9 Unmodified _AGSSSIPVI_ 0 0 0 REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7355041503906 2 415.734543 829.454533 0.20359 8.4638E-05 1.113 0.00046273 1.3166 0.00054737 415.73490850086154 42.316 0.28863 42.316 42.179 42.468 0 16 13 2 0 0 0 0.078417 1 22905 22905 38.151 2.107 1 3280800 + 785 25834 564 570 858 858 0.03298407114800739 AGSSSIPVI 9 Unmodified _AGSSSIPVI_ 0 0 0 REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 415.734543 829.454533 0.20359 8.4638E-05 1.113 0.00046273 1.3166 0.00054737 415.73490850086154 42.316 0.28863 42.316 42.179 42.468 0 0 0 NaN 38.151 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3280800 + 786 25834 564 570 0.03298407114800739 AGTPSPIQL 9 Unmodified _AGTPSPIQL_ 0 0 0 ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1 ENSG00000248385|ENST00000432826|TARM1 ENSG00000248385|ENST00000432826|TARM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2482604980469 2 442.247818 882.481082 1.5761 0.00069704 -0.080633 -3.566E-05 1.4955 0.00066138 442.2480535757409 58.666 0.3947 52.592 52.403 52.798 -6.0745 44 21 3 0 0 0 0.07916 1 37623 37623 37.974 5.6685 1 13857000 787 10742 565 571 859 859 0.0351409600613124 AGTRIMGKEI 10 Unmodified _AGTRIMGKEI_ 0 0 0 nc|ENSG00000072778|P49748-3|ACADVL nc|ENSG00000072778|P49748-3|ACADVL nc|ENSG00000072778|P49748-3|ACADVL MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2025756835938 3 359.202465 1074.58556 2.0845 0.00074875 -1.4706 -0.00052824 0.61389 0.00022051 359.20202539733987 47.758 0.53255 42.524 42.26 42.793 -5.2339 96 31 4 0 0 0 0.68371 1 29680 29680 4.7159 0.18705 1 52647000 788 16050 566 572 860 860 0.05125474491228488 AGTVVGRVH 9 Unmodified _AGTVVGRVH_ 0 0 0 CHD9-CDH11|1|fusion;nc|ENSG00000140937|P55287-2|CDH11;ENSG00000140937|ENST00000268603|CDH11 CHD9-CDH11|1|fusion CHD9-CDH11|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2598876953125 2 448.259051 894.503549 2.2213 0.00099573 -1.6083 -0.00072093 0.61303 0.0002748 448.25826332284663 81.766 0.29289 81.826 81.659 81.952 0.059929 17 11 2 0 0 0 0.58865 1 45222 45222 2.0598 0 1 2575800 789 61 567 573 861 861 0.05207740194418875 AGTYEQCG 8 Unmodified _AGTYEQCG_ 0 0 0 REV__ENSG00000213995|ENST00000680254|NAXD REV__ENSG00000213995|ENST00000680254|NAXD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.3199462890625 1 828.319244 827.311968 -0.61988 -0.00051346 0.37009 0.00030655 -0.24979 -0.00020691 828.3203571945437 48.512 0.18612 48.512 48.413 48.6 0 11 8 2 0 0 0 0.74163 1 26644 26644 13.508 0.97634 1 1398200 + 790 24301 568 574 862 862 -0.10859548618873305 AGVAGPVFL 9 Unmodified _AGVAGPVFL_ 0 0 0 ENST00000570136.5_1_16:2588053-2611615:+|nuORF ENST00000570136.5_1_16:2588053-2611615:+|nuORF ENST00000570136.5_1_16:2588053-2611615:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 830.4773559570312 1 830.477066 829.469789 0.46959 0.00038998 1.1064 0.0009188 1.5759 0.0013088 830.4780037031745 80.204 0.35091 79.714 79.533 79.884 -0.48932 30 13 3 0 0 0 0.3554 1 43871 43871 14.582 2.9414 1 1871200 791 15470 569 575 863 863 0.04823318702653978 AGVFAKVSY 9 Unmodified _AGVFAKVSY_ 0 0 0 nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2569580078125 2 471.258185 940.501818 0.28797 0.00013571 -1.9825 -0.00093428 -1.6945 -0.00079857 471.25703408161786 65.524 0.32401 65.524 65.394 65.718 0 22 12 2 0 0 0 0.32871 1 36560 36560 15.847 1.2655 1 1330900 792 9700 570 576 864 864 0.029186863858058132 AGVFAKVSY 9 Unmodified _AGVFAKVSY_ 0 0 0 nc|ENSG00000188803|Q6ZSJ9|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;ENSG00000188803|ENST00000441885|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 nc|ENSG00000188803|Q6ZSJ9|SHISA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2568664550781 2 471.258185 940.501818 0.10686 5.0358E-05 -2.4223 -0.0011415 -2.3155 -0.0010912 471.2570415444127 66.034 0.21654 65.551 65.434 65.651 -0.48323 14 9 2 0 0 0 0.32871 1 36035 36035 15.847 1.2655 1 2665200 793 9700 570 576 865 865 0.029186863858058132 AGVHLGRGR 9 Unmodified _AGVHLGRGR_ 0 0 0 REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF REV__ENST00000361906.7_1_22:38615713-38615971:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.531494140625 1 922.532958 921.525681 0.41793 0.00038555 -4.2756 -0.0039444 -3.8577 -0.0035588 922.5294716205942 27.037 0.073874 24.001 23.966 24.04 -3.0365 5 3 2 0 0 0 0.58865 1 14960 14960 2.0598 1.2661 1 5207600 + 794 25943 571 577 866 866 0.06177964662856539 AGVPEWPAT 9 Unmodified _AGVPEWPAT_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2360229492188 2 464.232168 926.449782 0.96496 0.00044796 3.9394 0.0018288 4.9043 0.0022767 464.2334697088422 57.344 0.22773 57.344 57.239 57.467 0 14 9 2 0 0 0 0.28047 1 31902 31902 18.135 2.2878 1 646430 + 795 24526 572 578 867 867 -0.016384770279614713 AGWECICCP 9 Unmodified _AGWECICCP_ 0 0 0 REV__ENST00000461347.5_1_2:232347689-232348088:-|nuORF REV__ENST00000461347.5_1_2:232347689-232348088:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.185546875 2 491.184991 980.35543 0.59398 0.00029175 1.2316 0.00060494 1.8256 0.00089669 491.1854082571389 59.825 0.37638 59.772 59.499 59.875 -0.053059 29 18 2 0 0 0 0.58865 1 32657 32657 2.0598 1.2661 1 7399300 + 796 27317 573 579 868 868 -0.1355339843762522 AGWPHLRQ 8 Unmodified _AGWPHLRQ_ 0 0 0 REV__ENST00000534765.1_1_11:65835264-65836005:+|nuORF REV__ENST00000534765.1_1_11:65835264-65836005:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7593688964844 2 482.759218 963.503883 0.63214 0.00030517 -0.61262 -0.00029575 0.019522 9.4245E-06 482.75864546563935 83.332 0.35429 82.835 82.698 83.052 -0.49751 16 14 2 0 0 0 0.80975 1 45684 45684 0.79363 0 1 360870 + 797 28508 574 580 869 869 0.02067159914270178 AGWRGWAP 8 Unmodified _AGWRGWAP_ 0 0 0 ENST00000456318.5_2_3:184079592-184080900:+|nuORF ENST00000456318.5_2_3:184079592-184080900:+|nuORF ENST00000456318.5_2_3:184079592-184080900:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7279357910156 2 450.727387 899.44022 NaN NaN NaN NaN NaN NaN NaN 57.64 1 57.64 57.14 58.14 0 0 0 0 0.97348 1 32078 32078 5.7604 0 1 798 13596 575 581 870 870 -0.013522005228196576 AGYEQATY 8 Unmodified _AGYEQATY_ 0 0 0 REV__ENST00000216019.11_1_22:38881942-38884127:-|nuORF REV__ENST00000216019.11_1_22:38881942-38884127:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.6982116699219 2 451.698158 901.381762 NaN NaN NaN NaN NaN NaN NaN 38.09 1 38.09 37.59 38.59 0 0 0 0 0.9706 1 20318 20318 6.3541 0 1 + 799 18025 576 582 871 871 -0.07287346678629092 AGYERYEF 8 Unmodified _AGYERYEF_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.730712890625 2 517.732532 1033.45051 0.11275 5.8375E-05 -1.6114 -0.00083428 -1.4987 -0.0007759 517.731183274588 42.034 0.20417 42.034 41.901 42.105 0 19 10 3 0 0 0 0.40035 1 22750 22750 44.407 10.305 1 6222100 + 800 17726 577 583 872 872 -0.06487682378906356 AGYRILAKLI 10 Unmodified _AGYRILAKLI_ 0 0 0 REV__ENSG00000065802|ENST00000264607|ASB1 REV__ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3600463867188 2 559.358234 1116.70191 1.743 0.00097493 0.17258 9.6535E-05 1.9155 0.0010715 559.3584794191044 104.83 0.13221 98.651 98.573 98.705 -6.1757 33 14 3 0 0 0 0.70951 1 70147 70147 1.8442 1.8442 1 29108000 + 801 17387 578 584 873 873 0.1482316105341397 AHAFLYARRDR 11 Unmodified _AHAFLYARRDR_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.3695068359375 2 688.370727 1374.7269 NaN NaN NaN NaN NaN NaN NaN 82.836 1 82.836 82.336 83.336 0 0 0 0 0.94301 1 45948 45948 0.35063 0.043601 1 + 802 22249 579 585 874 874 0.054526089086721186 AHAIHFPISF 10 Unmodified _AHAIHFPISF_ 0 0 0 REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8273315429688 2 570.303458 1138.59236 3.3255 0.0018966 -0.60538 -0.00034525 2.7202 0.0015513 570.3036087361213 99.617 0.10986 99.58 99.503 99.613 -0.036301 5 3 2 0 0 0 0.23896 1 55301 55301 3.5965 0.70727 1 1185400 + 803 26862 580 586 875 875 0.028611554340841394 AHAIVAVEN 9 Unmodified _AHAIVAVEN_ 0 0 0 ENST00000494591.1_1_4:144346351-144346597:+|nuORF ENST00000494591.1_1_4:144346351-144346597:+|nuORF ENST00000494591.1_1_4:144346351-144346597:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2508544921875 2 462.250892 922.48723 0.83395 0.00038549 -0.63801 -0.00029492 0.19594 9.0573E-05 462.25068176358656 35.6 0.32623 31.407 31.201 31.527 -4.1928 25 19 2 0 0 0 0.25681 1 20683 20683 19.257 5.3509 1 7291700 804 14334 581 587 876 876 0.022886142376592034 AHAPSPSI 8 Unmodified _AHAPSPSI_ 0 0 0 REV__ENST00000329198.4_1_5:172659146-172659296:-|nuORF REV__ENST00000329198.4_1_5:172659146-172659296:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.207275390625 2 390.205953 778.397353 NaN NaN NaN NaN NaN NaN NaN 24.764 1 24.789 24.289 25.289 0.024429 0 0 0 0.97444 1 12788 12788 2.5775 0 1 + 805 25585 582 588 877 877 -0.0007101537089511112 AHATSFPF 8 Unmodified _AHATSFPF_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MSMS AL20221201_MKP_PDAC_01 4 439.2162475585938 2 439.213778 876.413003 NaN NaN NaN NaN NaN NaN NaN 37.425 1 33.141 32.641 33.641 -4.2835 0 0 0 0.85111 1 21967 21967 20.871 3.9289 1 806 7892 583 589 878 878 -0.030147288538614703 AHAVTSPFLL 10 Unmodified _AHAVTSPFLL_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;ENST00000529360.1_1_11:6232738-6236214:-|nuORF ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5349731445312 3 352.53432 1054.58113 0.53248 0.00018772 1.5183 0.00053524 2.0507 0.00072295 352.53483185388785 25.614 0.39502 22.731 22.514 22.909 -2.8831 39 21 3 0 0 0 0.6192 1 14000 14000 10.151 0.76745 1 15437000 807 729 584 590 879 879 0.05602333339948018 AHDEFRCD 8 Unmodified _AHDEFRCD_ 0 0 0 ENSG00000235718|ENST00000619721|MFRP;nc|ENSG00000235718|Q9BY79-2|MFRP ENSG00000235718|ENST00000619721|MFRP ENSG00000235718|ENST00000619721|MFRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.6997680664062 2 496.698166 991.381779 0.17063 8.4751E-05 1.46 0.00072517 1.6306 0.00080992 496.6987073788351 47.024 0.31302 47.024 46.858 47.171 0 32 14 4 0 0 0 0.80232 1 25717 25717 5.2307 0.47466 1 7715800 808 10639 585 591 880 880 -0.11425669950256179 AHDFVFYY 8 Unmodified _AHDFVFYY_ 0 0 0 REV__ENSG00000109929|ENST00000264027|SC5D REV__ENSG00000109929|ENST00000264027|SC5D MSMS AL20221201_MKP_PDAC_01 4 354.4970397949219 3 354.495754 1060.46543 NaN NaN NaN NaN NaN NaN NaN 46.582 1 41.502 41.002 42.002 -5.0805 0 0 0 0.88073 1 28811 28811 14.838 0.93222 1 + 809 18679 586 592 881 881 -0.06238190510907771 AHDIKKVL 8 Unmodified _AHDIKKVL_ 0 0 0 REV__ENSG00000080709|ENST00000673685|KCNN2 REV__ENSG00000080709|ENST00000673685|KCNN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7090759277344 2 462.287277 922.560001 0.94241 0.00043566 -0.41895 -0.00019368 0.52345 0.00024199 462.28710089850546 49.803 0.271 49.803 49.695 49.966 0 20 12 2 0 0 0 8.7369 1 27383 27383 5.2307 0.90143 1 2013500 + 810 17673 587 593 882 882 0.09562368031083679 AHDTQPTQTPG 11 Unmodified _AHDTQPTQTPG_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7694091796875 2 576.767634 1151.52072 0.62141 0.00035841 3.5768 0.002063 4.1982 0.0024214 576.769507317141 43.423 0.21677 43.407 43.266 43.483 -0.015667 15 9 2 0 0 0 0.66428 1 23291 23291 7.609 0.50723 1 9112500 + 811 23576 588 594 883 883 -0.048984287810981186 AHDTQPTQTPG 11 Unmodified _AHDTQPTQTPG_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.767634 1151.52072 0.62141 0.00035841 3.5768 0.002063 4.1982 0.0024214 576.769507317141 43.423 0.21677 43.407 43.266 43.483 -0.015667 0 0 NaN 7.609 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 9112500 + 812 23576 588 594 -0.048984287810981186 AHELRYSIY 9 Unmodified _AHELRYSIY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.298583984375 2 576.29583 1150.57711 1.3407 0.00077262 1.126 0.00064893 2.4667 0.0014216 576.297076664308 46.963 0.24215 46.93 46.774 47.016 -0.033417 37 11 4 0 0 0 0.30202 1 25286 25286 17.113 1.2657 1 30150000 813 8039 589 595 884 884 0.007842438462375867 AHFPRAWR 8 Unmodified _AHFPRAWR_ 0 0 0 ENST00000396901.5_2_19:36387403-36388674:-|nuORF;ENST00000586361.5_1_19:36387800-36388662:-|nuORF;ENST00000585925.5_3_19:36387980-36389376:-|nuORF ENST00000396901.5_2_19:36387403-36388674:-|nuORF ENST00000396901.5_2_19:36387403-36388674:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7807006835938 2 520.780485 1039.54642 0.12217 6.3626E-05 -1.9302 -0.0010052 -1.8081 -0.0009416 520.7803027865398 73.179 0.56846 73.22 72.901 73.469 0.041725 60 26 3 0 0 0 0.80676 1 40231 40231 2.5775 0 1 5217300 814 12809 590 596 885 885 0.028225550425077017 AHGPLRDLGSA 11 Unmodified _AHGPLRDLGSA_ 0 0 0 ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENST00000317677.9_1_20:34220804-34241573:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.1968383789062 3 365.196478 1092.56761 NaN NaN NaN NaN NaN NaN NaN 79.29 1 73.114 72.614 73.614 -6.1757 0 0 0 0.92234 1 51947 51947 2.8433 0.56051 1 815 11748 591 597 886 886 0.025024755606864346 AHGPRLRTF 9 Unmodified _AHGPRLRTF_ 0 0 0 REV__ENST00000525151.5_1_6:111804740-111824521:+|nuORF REV__ENST00000525151.5_1_6:111804740-111824521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7905883789062 2 527.798875 1053.5832 -0.17673 -9.328E-05 1.1611 0.00061283 0.98437 0.00051955 527.7984028975266 53.997 0.62421 53.931 53.637 54.262 -0.066936 82 33 4 0 0 0 0.41742 1 29165 29165 11.64 0 1 90816000 + 816 28345 592 598 887 887 0.05854806868410378 AHGQFIFSSW 10 Unmodified _AHGQFIFSSW_ 0 0 0 REV__nc|ENSG00000103495|P56270-3|MAZ REV__nc|ENSG00000103495|P56270-3|MAZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8583374023438 3 393.857574 1178.55089 0.38608 0.00015206 1.9957 0.00078601 2.3817 0.00093807 393.8583040796709 97.177 0.29665 96.935 96.748 97.045 -0.24277 18 12 2 0 0 0 0.71276 1 53052 53052 0.62683 0 1 762410 + 817 29544 593 599 888 888 -0.031240253252462935 AHHPALGV 8 Unmodified _AHHPALGV_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2226257324219 2 401.221937 800.429321 0.75773 0.00030402 1.5412 0.00061837 2.299 0.00092239 401.22252381430127 50.569 0.28142 50.515 50.347 50.628 -0.053875 23 13 2 0 0 0 0.80975 1 27345 27345 0.79363 0 1 3239800 + 818 17538 594 600 889 889 0.02112397102905561 AHHVHIPEVY 10 Unmodified _AHHVHIPEVY_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2085266113281 3 401.208607 1200.60399 NaN NaN NaN NaN NaN NaN NaN 27.488 1 27.442 26.942 27.942 -0.046408 0 0 0 0.96627 1 14168 14168 2.086 0 1 819 4092 595 601 890 890 0.011713524574133771 AHIACRDLF 9 Unmodified _AHIACRDLF_ 0 0 0 nc|ENSG00000123815|Q96D53-2|COQ8B;ENSG00000123815|ENST00000324464|COQ8B nc|ENSG00000123815|Q96D53-2|COQ8B nc|ENSG00000123815|Q96D53-2|COQ8B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7672119140625 2 523.266019 1044.51748 0.2702 0.00014139 4.0023 0.0020943 4.2725 0.0022357 523.2679783425463 67.825 0.16617 67.843 67.748 67.914 0.018028 9 7 2 0 0 0 0.18118 1 37262 37262 18.135 10.846 1 1228400 820 3730 596 602 891 891 -0.002993503688230703 AHIEEENF 8 Unmodified _AHIEEENF_ 0 0 0 nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7234191894531 2 494.722164 987.429775 1.1023 0.00054534 2.3386 0.0011569 3.4409 0.0017023 494.72357330057173 80.054 0.28394 79.564 79.428 79.712 -0.48932 15 10 2 0 0 0 0.78849 1 43848 43848 9.3474 1.4373 1 415310 821 6252 597 603 892 892 -0.06444272758562875 AHIFRGTFVH 10 Unmodified _AHIFRGTFVH_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000376986.5_1_9:74764457-74810425:+|nuORF ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5489807128906 3 395.548964 1183.62506 NaN NaN NaN NaN NaN NaN NaN 59.726 1 59.673 59.173 60.173 -0.053062 0 0 0 0.97302 1 32563 32563 1.7423 0 1 822 3413 598 604 893 893 0.040593625569499636 AHIQMVNEAW 10 Unmodified _AHIQMVNEAW_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.1940307617188 3 400.193969 1197.56008 -0.36575 -0.00014637 0.041543 1.6625E-05 -0.3242 -0.00012974 400.19408327057226 23.416 0.26126 23.416 23.287 23.548 0 46 12 5 0 0 0 0.44373 1 11917 11917 12.175 4.2293 1 11293000 + 823 17906 599 605 894 894 -0.030800000312410702 AHIQMVNEAW 10 Unmodified _AHIQMVNEAW_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.193603515625 3 400.193969 1197.56008 0.036132 1.446E-05 -1.3128 -0.00052536 -1.2766 -0.0005109 400.19363011510103 23.48 0.13925 23.492 23.455 23.594 0.012396 10 5 2 0 0 0 0.54684 1 11991 11991 8.4443 0 1 4097800 + 824 17906 599 605 895 895 -0.030800000312410702 AHIQMVNEAW 10 Unmodified _AHIQMVNEAW_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 400.193969 1197.56008 -0.36575 -0.00014637 0.041543 1.6625E-05 -0.3242 -0.00012974 400.19408327057226 23.416 0.26126 23.416 23.287 23.548 0 -0.01812 0.00037418 NaN 12.175 46 12 5 NaN NaN NaN NaN 0 NaN NaN 0 11293000 + 825 17906 599 605 -0.030800000312410702 AHIQMVNEAW 10 Unmodified _AHIQMVNEAW_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 400.193969 1197.56008 0.036132 1.446E-05 -1.3128 -0.00052536 -1.2766 -0.0005109 400.19363011510103 23.48 0.13925 23.492 23.455 23.594 0.012396 0.058347 -0.0012518 NaN 12.175 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4097800 + 826 17906 599 605 -0.030800000312410702 AHIQMVNEAW 10 Unmodified _AHIQMVNEAW_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 400.193969 1197.56008 -0.00085659 -3.428E-07 1.126 0.00045063 1.1252 0.00045029 400.19454128288083 23.372 0.096792 23.393 23.322 23.419 0.021185 -0.040226 0.0016762 NaN 12.175 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2081000 + 827 17906 599 605 -0.030800000312410702 AHIQNELERE 10 Unmodified _AHIQNELERE_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5428466796875 3 413.542314 1237.60511 0.62055 0.00025662 1.4542 0.00060138 2.0748 0.00085801 413.54290624541835 57.577 0.25739 57.511 57.397 57.655 -0.066036 30 12 3 0 0 0 0.68719 1 31332 31332 2.086 0 1 3136400 828 8957 600 606 896 896 -0.004184779643082948 AHIQNELERE 10 Unmodified _AHIQNELERE_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5433959960938 3 413.542314 1237.60511 0.6467 0.00026744 0.93355 0.00038606 1.5802 0.0006535 413.54276923701036 57.821 0.27682 57.755 57.614 57.89 -0.066036 30 13 3 0 0 0 0.68719 1 31476 31476 2.086 0.17963 1 2902400 829 8957 600 606 897 897 -0.004184779643082948 AHIVLQSGQAV 11 Unmodified _AHIVLQSGQAV_ 0 0 0 REV__ENSG00000130202|ENST00000252483|NECTIN2 REV__ENSG00000130202|ENST00000252483|NECTIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8821105957031 3 374.880379 1121.61931 0.60731 0.00022767 2.5535 0.00095726 3.1608 0.0011849 374.88154572284844 49.416 0.28014 49.371 49.174 49.454 -0.04546 18 13 2 0 0 0 0.67371 1 26711 26711 3.0723 0 1 1784300 + 830 19704 601 607 898 898 0.06336219254603748 AHKGETVTC 9 Unmodified _AHKGETVTC_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2274475097656 2 473.226559 944.438566 NaN NaN NaN NaN NaN NaN NaN 41.59 1 41.59 41.09 42.09 0 0 0 0 0.6032 1 22449 22449 12.532 0.89125 1 + 831 21226 602 608 899 899 -0.03587622393752099 AHLAFLQDF 9 Unmodified _AHLAFLQDF_ 0 0 0 REV__nc|ENSG00000091181|Q01344-3|IL5RA REV__nc|ENSG00000091181|Q01344-3|IL5RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.273681640625 2 531.274367 1060.53418 0.30515 0.00016212 -0.86616 -0.00046017 -0.56101 -0.00029805 531.2739664552901 73.72 0.39646 73.764 73.589 73.985 0.043983 47 18 3 0 0 0 0.3554 1 40694 40694 14.582 3.4672 1 15019000 + 832 17887 603 609 900 900 0.0063347378879825555 AHLAFLQDF 9 Unmodified _AHLAFLQDF_ 0 0 0 REV__nc|ENSG00000091181|Q01344-3|IL5RA REV__nc|ENSG00000091181|Q01344-3|IL5RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2750854492188 2 531.274367 1060.53418 1.2831 0.00068169 0.37467 0.00019906 1.6578 0.00088074 531.2746150625094 95.905 0.23178 89.73 89.601 89.833 -6.1757 29 13 3 0 0 0 0.18465 1 63510 63510 24.674 1.5255 1 15004000 + 833 17887 603 609 901 901 0.0063347378879825555 AHLATHPW 8 Unmodified _AHLATHPW_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7408447265625 2 466.740494 931.466435 0.42531 0.00019851 1.7748 0.00082837 2.2001 0.0010269 466.74094292420716 48.062 0.2943 48.024 47.869 48.164 -0.038643 24 14 2 0 0 0 0.80044 1 25928 25928 6.3541 0 1 1392200 834 9016 604 610 902 902 -0.0020393135134781915 AHLFALVP 8 Unmodified _AHLFALVP_ 0 0 0 ENST00000395474.7_2_3:49053065-49053377:+|nuORF ENST00000395474.7_2_3:49053065-49053377:+|nuORF ENST00000395474.7_2_3:49053065-49053377:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.2608337402344 2 434.257988 866.501424 NaN NaN NaN NaN NaN NaN NaN 103.18 1 97.001 96.501 97.501 -6.1757 0 0 0 0.97444 1 69196 69196 2.8892 0 1 835 12771 605 611 903 903 0.06283311456616048 AHLGLPKCWDY 11 Unmodified _AHLGLPKCWDY_ 0 0 0 AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|14|1|anti-sense AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|14|1|anti-sense AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|14|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8816833496094 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 30.205 1 30.205 29.705 30.705 0 0 0 0 0.9385 1 15684 15684 1.4551 0.82829 1 836 20 606 612 904 904 -0.016068539630396117 AHLGQGAY 8 Unmodified _AHLGQGAY_ 0 0 0 REV__ENST00000509914.5_1_5:139943783-139943852:-|nuORF REV__ENST00000509914.5_1_5:139943783-139943852:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.4003295898438 1 816.399878 815.392602 -0.089849 -7.3353E-05 0.11411 9.3163E-05 0.024265 1.981E-05 816.3990364726623 46.89 0.38482 46.89 46.718 47.103 0 30 18 2 0 0 0 0.5953 1 25711 25711 26.341 4.5946 1 5284800 + 837 28134 607 613 905 905 -0.022478995136793856 AHLGQGAY 8 Unmodified _AHLGQGAY_ 0 0 0 REV__ENST00000509914.5_1_5:139943783-139943852:-|nuORF REV__ENST00000509914.5_1_5:139943783-139943852:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.70361328125 2 408.703577 815.392602 -0.077953 -3.186E-05 -0.13121 -5.3625E-05 -0.20916 -8.5485E-05 408.7034778053168 46.912 0.5994 46.912 46.74 47.339 0 66 28 3 0 0 0 0.80044 1 25726 25726 6.3541 0 1 50935000 + 838 28134 607 613 906 906 -0.022478995136793856 AHLNPSLL 8 Unmodified _AHLNPSLL_ 0 0 0 ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2;ENST00000549964.1_1_12:56726569-56726878:-|nuORF ENST00000547994.5_1_12:56718022-56726878:-|nuORF ENST00000547994.5_1_12:56718022-56726878:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.2248229980469 2 432.750527 863.486502 0.7734 0.00033469 -0.31066 -0.00013444 0.46274 0.00020025 432.75039937262693 46.079 0.20715 46.079 45.957 46.164 0 12 9 2 0 0 0 8.7369 1 25190 25190 20.871 6.2895 1 2222900 839 4711 608 614 907 907 0.049298195886080975 AHLPHTFQF 9 Unmodified _AHLPHTFQF_ 0 0 0 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2825317382812 2 549.279983 1096.54541 0.45876 0.00025199 3.1653 0.0017386 3.624 0.0019906 549.2831110913637 48.034 0.37876 47.995 47.743 48.122 -0.038647 33 18 3 0 0 0 0.024882 1 25880 25880 58.679 32.338 1 2862800 840 3819 609 615 908 908 0.0010029588295310532 AHLPHTFQF 9 Unmodified _AHLPHTFQF_ 0 0 0 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.52294921875 3 366.522414 1096.54541 0.37814 0.0001386 0.86248 0.00031612 1.2406 0.00045472 366.5226844975351 48.048 0.33459 48.009 47.849 48.184 -0.038643 30 16 2 0 0 0 0.16776 1 25883 25883 18.146 10.537 1 3851400 841 3819 609 615 909 909 0.0010029588295310532 AHLQCFDAVFY 11 Unmodified _AHLQCFDAVFY_ 0 0 0 ENSG00000105229|ENST00000262971|PIAS4 ENSG00000105229|ENST00000262971|PIAS4 ENSG00000105229|ENST00000262971|PIAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5382690429688 3 438.537624 1312.59104 0.63064 0.00027656 1.8153 0.00079606 2.4459 0.0010726 438.8731666965078 72.913 0.22302 72.437 72.318 72.541 -0.47588 15 9 2 0 0 0 0.72952 1 39889 39889 0.50596 0 1 447200 842 2291 610 616 910 910 -0.05274846716997672 AHLVKLTPFD 10 Unmodified _AHLVKLTPFD_ 0 0 0 REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8245239257812 2 570.824224 1139.63389 0.63439 0.00036213 -1.2642 -0.00072165 -0.62984 -0.00035953 570.8238497037426 49.376 0.24068 49.332 49.215 49.456 -0.04369 33 11 4 0 0 0 0.60623 1 26670 26670 10.824 2.0785 1 6086800 + 843 28819 611 617 911 911 0.06966291402750358 AHLVKLTPFD 10 Unmodified _AHLVKLTPFD_ 0 0 0 REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.824224 1139.63389 0.95947 0.00054769 -1.0063 -0.00057441 -0.046812 -2.6721E-05 570.8243772994335 49.777 0.1535 49.385 49.277 49.431 -0.3923 0.026348 0.0001956 NaN 10.824 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1184500 + 844 28819 611 617 0.06966291402750358 AHLVKLTPFD 10 Unmodified _AHLVKLTPFD_ 0 0 0 REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF REV__ENST00000559780.5_1_15:60685529-60685568:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.824224 1139.63389 0.63439 0.00036213 -1.2642 -0.00072165 -0.62984 -0.00035953 570.8238497037426 49.376 0.24068 49.332 49.215 49.456 -0.04369 -0.026348 -9.8888E-05 NaN 10.824 33 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6086800 + 845 28819 611 617 0.06966291402750358 AHLYAMGECI 10 Unmodified _AHLYAMGECI_ 0 0 0 REV__ENSG00000105397|ENST00000525621|TYK2 REV__ENSG00000105397|ENST00000525621|TYK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2523803710938 2 554.25172 1106.48889 0.70932 0.00039314 0.43523 0.00024123 1.1446 0.00063437 554.2523646711568 64.727 0.77538 64.242 63.929 64.704 -0.48512 123 35 6 0 0 0 0.65502 1 35389 35389 7.9102 0 1 133060000 + 846 18422 612 618 912 912 -0.060098360602523826 AHPFLAGH 8 Unmodified _AHPFLAGH_ 0 0 0 ENST00000397061.3_1_19:33183408-33183504:+|nuORF ENST00000397061.3_1_19:33183408-33183504:+|nuORF ENST00000397061.3_1_19:33183408-33183504:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2215881347656 2 425.221937 848.429321 0.19957 8.4861E-05 -0.51011 -0.00021691 -0.31054 -0.00013205 425.22158223965477 76.079 0.4707 76.127 75.927 76.397 0.047943 43 19 3 0 0 0 0.80624 1 42026 42026 2.8892 2.0956 1 19184000 847 12814 613 619 913 913 -0.0009560289711316727 AHPIIFWN 8 Unmodified _AHPIIFWN_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B;ENST00000492898.1_1_1:153903201-153905153:-|nuORF ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2323913574219 2 499.266345 996.518136 NaN NaN NaN NaN NaN NaN NaN 73.066 1 72.59 72.09 73.09 -0.47588 0 0 0 0.97444 1 39984 39984 2.8892 0.58649 1 848 10168 614 620 914 914 0.019738123425668164 AHPLHHER 8 Unmodified _AHPLHHER_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7619323730469 2 498.759749 995.504946 NaN NaN NaN NaN NaN NaN NaN 73.159 1 72.684 72.184 73.184 -0.47588 0 0 0 0.97444 1 40034 40034 2.8892 0.58649 1 + 849 27179 615 621 915 915 0.007013742831759373 AHPPAPAQ 8 Unmodified _AHPPAPAQ_ 0 0 0 REV__ENSG00000182631|ENST00000330120|RXFP3 REV__ENSG00000182631|ENST00000330120|RXFP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.7057800292969 2 394.70612 787.397687 -0.070013 -2.7634E-05 -0.34179 -0.00013491 -0.4118 -0.00016254 394.7060168821288 46.918 0.26279 46.918 46.799 47.062 0 21 12 2 0 0 0 0.80044 1 25658 25658 6.3541 0 1 4668600 + 850 23286 616 622 916 916 -0.004515956510545038 AHPPCPGS 8 Unmodified _AHPPCPGS_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1691284179688 2 383.171056 764.327559 NaN NaN NaN NaN NaN NaN NaN 62.125 1 62.125 61.625 62.625 0 0 0 0 0.97444 1 34643 34643 2.8892 2.2877 1 + 851 17022 617 623 917 917 -0.06403217311162734 AHPPKETPRPF 11 Unmodified _AHPPKETPRPF_ 0 0 0 ENST00000252804.8_1_2:1636313-1636529:-|nuORF ENST00000252804.8_1_2:1636313-1636529:-|nuORF ENST00000252804.8_1_2:1636313-1636529:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.232421875 3 426.231412 1275.67241 1.0153 0.00043274 1.6388 0.00069851 2.6541 0.0011312 426.2322079774074 46.396 0.22795 46.363 46.224 46.452 -0.033421 18 10 3 0 0 0 0.67037 1 24977 24977 7.0371 1.9896 1 2063300 852 11154 618 624 918 918 0.045595970372460215 AHPPLLVL 8 Unmodified _AHPPLLVL_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.2736511230469 2 430.273638 858.532724 0.58903 0.00025345 -0.86954 -0.00037414 -0.28051 -0.0001207 430.2731438864667 68.119 0.52921 67.636 67.346 67.875 -0.48218 50 24 3 0 0 0 0.32738 2 37298 37192;37298 52.334 19.881 1 4747300 853 4264 619 625 919;920 920 0.09779884490706081 AHPPLLVL 8 Unmodified _AHPPLLVL_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2742919921875 2 430.273638 858.532724 1.2625 0.00054322 0.16941 7.2892E-05 1.4319 0.00061611 430.2737365270761 71.542 0.33089 65.366 65.189 65.52 -6.1757 25 16 2 0 0 0 0.32738 1 46722 46722 52.334 19.881 1 21365000 854 4264 619 625 921 921 0.09779884490706081 AHPPPTAL 8 Unmodified _AHPPPTAL_ 0 0 0 REV__ENSG00000198205|ENST00000358697|ZXDA REV__ENSG00000198205|ENST00000358697|ZXDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2237243652344 2 402.224146 802.433738 0.56804 0.00022848 -0.45551 -0.00018322 0.11253 4.5262E-05 402.22380851449145 64.627 0.4099 64.142 63.949 64.359 -0.48512 32 18 2 0 0 0 0.65867 1 35259 35259 20.871 0 1 2266300 + 855 24001 620 626 922 922 0.02461861525785025 AHPPPTAL 8 Unmodified _AHPPPTAL_ 0 0 0 REV__ENSG00000198205|ENST00000358697|ZXDA REV__ENSG00000198205|ENST00000358697|ZXDA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1882019042969 2 402.224146 802.433738 0.56804 0.00022848 -0.45551 -0.00018322 0.11253 4.5262E-05 402.22380851449145 64.627 0.4099 64.142 63.949 64.359 -0.48512 32 18 2 0 0 0 8.7369 1 35224 35224 20.871 0 1 2266300 + 856 24001 620 626 923 923 0.02461861525785025 AHPPQAIT 8 Unmodified _AHPPQAIT_ 0 0 0 ENST00000382291.7_1_20:334770-334854:+|nuORF ENST00000382291.7_1_20:334770-334854:+|nuORF ENST00000382291.7_1_20:334770-334854:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4553833007812 1 834.446828 833.439552 -0.092812 -7.7447E-05 -0.65203 -0.00054408 -0.74484 -0.00062153 834.4460738655908 62.107 0.30626 62.107 61.951 62.257 0 26 14 3 0 0 0 0.80975 1 34650 34650 0.79363 0 1 4142900 857 12629 621 627 924 924 0.01616960037449644 AHPSCIYDQV 10 Unmodified _AHPSCIYDQV_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1598815917969 3 378.174574 1131.50189 -0.30713 -0.00011615 2.4797 0.00093777 2.1726 0.00082162 378.1757401526109 45.135 0.21381 45.135 45.016 45.23 0 20 10 3 0 0 0 0.23558 1 24597 24597 4.7159 1.1289 1 4781800 + 858 18862 622 628 925 925 -0.05859681676543005 AHPVDPHP 8 Unmodified _AHPVDPHP_ 0 0 0 ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.216796875 2 435.216852 868.419151 0.11836 5.1511E-05 -0.4031 -0.00017544 -0.28474 -0.00012393 435.2167784318658 46.912 0.40876 46.912 46.762 47.171 0 39 19 3 0 0 0 0.5953 1 25642 25642 26.341 5.4701 1 11713000 859 13161 623 629 926 926 -0.020322106223488845 AHQRNHWDL 9 Unmodified _AHQRNHWDL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-2|NOTCH4;ENST00000491215.1_1_6:32163216-32164008:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7885131835938 2 588.786496 1175.55844 -0.44535 -0.00026222 4.1561 0.0024471 3.7108 0.0021849 588.7888107946349 25.615 0.16705 25.615 25.528 25.695 0 12 7 2 0 0 0 0.39863 1 13153 13153 12.532 4.376 1 680340 860 10263 624 630 927 927 -0.022318730049619262 AHQYSFQSDLL 11 Unmodified _AHQYSFQSDLL_ 0 0 0 REV__ENST00000517974.1_1_8:117671049-117768052:-|nuORF REV__ENST00000517974.1_1_8:117671049-117768052:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8799438476562 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 77.191 1 76.708 76.208 77.208 -0.4826 0 0 0 0.9428 1 42258 42258 0.50596 0.051438 1 + 861 20907 625 631 928 928 -0.026887096787959308 AHRHEHFEVF 10 Unmodified _AHRHEHFEVF_ 0 0 0 REV__ENST00000496452.5_1_2:70456348-70475673:-|nuORF REV__ENST00000496452.5_1_2:70456348-70475673:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795471191406 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 76.704 1 76.704 76.204 77.204 0 0 0 0 0.99897 1 42642 42642 0.77653 0 1 + 862 19020 626 632 929 929 -0.025550307994080868 AHRKMLQKR 9 Unmodified _AHRKMLQKR_ 0 0 0 ENST00000481597.5_1_3:50356335-50357944:-|nuORF;ENSG00000068001|ENST00000357750|HYAL2 ENST00000481597.5_1_3:50356335-50357944:-|nuORF ENST00000481597.5_1_3:50356335-50357944:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1972961425781 3 389.901231 1166.68186 NaN NaN NaN NaN NaN NaN NaN 10.115 1 7.6327 7.1327 8.1327 -2.482 0 0 0 0.85798 1 5096 5096 0.23584 0 1 863 969 627 633 930 930 0.10519086841804892 AHRKPEAVVL 10 Unmodified _AHRKPEAVVL_ 0 0 0 nc|ENSG00000009950|Q9NP71-5|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL;nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL nc|ENSG00000009950|Q9NP71-5|MLXIPL MSMS AL20221201_MKP_PDAC_01 4 373.8934326171875 3 373.892619 1118.65603 NaN NaN NaN NaN NaN NaN NaN 55.104 1 49.183 48.683 49.683 -5.9211 0 0 0 0.9731 1 35036 35036 3.5871 0 1 864 409 628 634 931 931 0.10144515871184012 AHSASQGYQQE 11 Unmodified _AHSASQGYQQE_ 0 0 0 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 MSMS AL20221201_MKP_PDAC_01 4 402.5096435546875 3 402.510903 1204.51088 NaN NaN NaN NaN NaN NaN NaN 64.561 1 58.385 57.885 58.885 -6.1757 0 0 0 0.71476 1 41838 41838 9.2438 0 1 + 865 29571 629 635 932 932 -0.08319616786479855 AHSECFERWS 10 Unmodified _AHSECFERWS_ 0 0 0 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 REV__nc|ENSG00000178188|Q9NRF2-2|SH2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8450622558594 3 417.845228 1250.51386 -0.085646 -3.5787E-05 0.4619 0.000193 0.37625 0.00015722 417.8453808730106 62.172 0.2727 62.172 62.018 62.29 0 21 13 2 0 0 0 0.70951 1 34731 34731 0.77653 0 1 4140700 + 866 23026 630 636 933 933 -0.10138064933312307 AHSGNKKK 8 Unmodified _AHSGNKKK_ 0 0 0 REV__ENST00000534225.1_1_11:112024161-112024272:-|nuORF REV__ENST00000534225.1_1_11:112024161-112024272:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8819274902344 2 435.251226 868.487899 0.20898 9.0958E-05 -0.62507 -0.00027206 -0.41609 -0.0001811 435.2508995275692 80.075 0.26611 80.075 79.936 80.202 0 25 15 2 0 0 0 8.7369 1 44489 44489 0.69038 0 1 597890 + 867 28493 631 637 934 934 0.048394536773685104 AHSLPPAL 8 Unmodified _AHSLPPAL_ 0 0 0 ENST00000222690.10_1_7:44866953-44867181:-|nuORF ENST00000222690.10_1_7:44866953-44867181:-|nuORF ENST00000222690.10_1_7:44866953-44867181:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 805.457763671875 1 805.456665 804.449388 1.8014 0.0014509 -0.25857 -0.00020827 1.5428 0.0012427 805.456348069601 47.469 0.50745 42.235 42.043 42.55 -5.2339 64 29 3 0 0 0 0.21786 2 29526 29526;29662 67.035 7.2401 1 33301000 868 11039 632 638 935;936 935 0.03934148042844754 AHSNNENKTML 11 Unmodified _AHSNNENKTML_ 0 0 0 REV__ENSG00000121892|ENST00000303538|PDS5A REV__ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.1996154785156 3 420.199671 1257.57718 -0.52226 -0.00021945 1.0489 0.00044074 0.52661 0.00022128 420.20023167787224 19.49 0.17938 19.49 19.387 19.566 0 34 21 2 0 0 0 0.71036 1 9759 9759 1.3296 0.63198 1 1472100 + 869 19317 633 639 937 937 -0.041301242160898255 AHSPNKTVSY 10 Unmodified _AHSPNKTVSY_ 0 0 0 ENST00000305105.2_1_7:100867241-100867451:+|nuORF ENST00000305105.2_1_7:100867241-100867451:+|nuORF ENST00000305105.2_1_7:100867241-100867451:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5204162597656 3 368.520851 1102.54072 -0.32137 -0.00011843 -0.51716 -0.00019058 -0.83853 -0.00030902 368.52054098969217 36.731 0.22011 36.752 36.661 36.881 0.021545 16 9 3 0 0 0 0.66569 1 19485 19485 3.5871 0 1 1953700 870 11610 634 640 938 938 -0.0064463305047866015 AHSQGPRRL 9 Unmodified _AHSQGPRRL_ 0 0 0 REV__ENST00000568463.1_1_16:68389580-68391124:+|nuORF REV__ENST00000568463.1_1_16:68389580-68391124:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2854309082031 2 511.286131 1020.55771 0.95531 0.00048844 -0.44905 -0.0002296 0.50626 0.00025884 511.28569154425975 20.13 0.33258 17.474 17.312 17.645 -2.6564 50 23 3 0 0 0 0.45045 1 10771 10771 10.074 0.6908 1 7788800 + 871 19865 635 641 939 939 0.048253323459903186 AHSYIVYT 8 Unmodified _AHSYIVYT_ 0 0 0 REV__ENSG00000149124|ENST00000344743|GLYAT REV__ENSG00000149124|ENST00000344743|GLYAT MSMS AL20221201_MKP_PDAC_01 4 477.2384338378906 2 477.239993 952.465432 NaN NaN NaN NaN NaN NaN NaN 21.797 1 19.062 18.562 19.562 -2.7348 0 0 0 0.95607 1 11695 11695 9.3474 2.9933 1 + 872 20980 636 642 940 940 -0.012701905109224754 AHTQFKVF 8 Unmodified _AHTQFKVF_ 0 0 0 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2640686035156 2 489.263802 976.513051 -0.096519 -4.7223E-05 0.14783 7.2326E-05 0.051307 2.5103E-05 489.26386818726 56.216 0.36221 56.147 55.942 56.304 -0.068737 41 18 3 0 0 0 0.70294 1 30505 30505 16.942 1.0951 1 17638000 + 873 21480 637 643 941 941 0.023855084799492943 AHTQFKVF 8 Unmodified _AHTQFKVF_ 0 0 0 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2642517089844 2 489.263802 976.513051 0.9147 0.00044753 0.37813 0.00018501 1.2928 0.00063253 489.2640821527491 61.766 0.45683 55.59 55.367 55.823 -6.1757 44 23 3 0 0 0 0.70294 1 39884 39884 16.942 1.0951 1 49709000 + 874 21480 637 643 942 942 0.023855084799492943 AHTQFLPPLF 10 Unmodified _AHTQFLPPLF_ 0 0 0 REV__ENSG00000117971|ENST00000261751|CHRNB4 REV__ENSG00000117971|ENST00000261751|CHRNB4 MSMS AL20221201_MKP_PDAC_01 4 585.8220825195312 2 585.818941 1169.62333 NaN NaN NaN NaN NaN NaN NaN 101.03 1 94.857 94.357 95.357 -6.1757 0 0 0 0.64375 1 67708 67708 19.257 0 1 + 875 19128 638 644 943 943 0.04530308748326206 AHVAPTFDS 9 Unmodified _AHVAPTFDS_ 0 0 0 REV__CON__P01966 REV__CON__P01966 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7268371582031 2 472.727249 943.439946 -0.2342 -0.00011071 0.34777 0.0001644 0.11358 5.369E-05 472.7272156711088 25.411 0.38931 25.411 25.202 25.591 0 49 18 3 0 0 0 0.18465 2 13053 12957;13053 24.674 13.559 1 3679900 + + 876 16837 639 645 944;945 945 -0.034036650333405305 AHVEHLLLVKC 11 Unmodified _AHVEHLLLVKC_ 0 0 0 REV__nc|ENSG00000037280|P35916-3|FLT4 REV__nc|ENSG00000037280|P35916-3|FLT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.9104309082031 3 421.241031 1260.70126 1.3108 0.00055217 0.48893 0.00020596 1.7997 0.00075813 421.2412958578246 74.487 1.0395 68.311 67.903 68.943 -6.1757 123 54 3 0 0 0 0.69509 1 48727 48727 4.7159 1.6437 1 103890000 + 877 17172 640 646 946 946 0.08133998342054838 AHVISEISQF 10 Unmodified _AHVISEISQF_ 0 0 0 REV__ENSG00000162928|ENST00000295030|PEX13 REV__ENSG00000162928|ENST00000295030|PEX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7960205078125 2 565.795663 1129.57677 0.43116 0.00024395 -0.19284 -0.00010911 0.23832 0.00013484 565.7955047124179 58.491 0.29156 58.001 57.861 58.153 -0.49079 26 13 3 0 0 0 0.65502 1 31788 31788 7.9102 0 1 1850000 + 878 21707 641 647 947 947 0.017168241263561868 AHVPPVAGS 9 Unmodified _AHVPPVAGS_ 0 0 0 ENST00000487283.5_1_2:98351482-98355958:+|nuORF ENST00000487283.5_1_2:98351482-98355958:+|nuORF ENST00000487283.5_1_2:98351482-98355958:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 834.4474487304688 1 834.446828 833.439552 -0.092812 -7.7447E-05 -0.65203 -0.00054408 -0.74484 -0.00062153 834.4460738655908 62.107 0.30626 62.107 61.951 62.257 0 26 14 3 0 0 0 0.2001 2 34594 34594;34702 23.148 0 1 4142900 879 14202 642 648 948;949 948 0.016169600374723814 AHVPPVAGS 9 Unmodified _AHVPPVAGS_ 0 0 0 ENST00000487283.5_1_2:98351482-98355958:+|nuORF ENST00000487283.5_1_2:98351482-98355958:+|nuORF ENST00000487283.5_1_2:98351482-98355958:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.447998046875 1 834.446828 833.439552 0.15998 0.00013349 -0.071563 -5.9715E-05 0.088415 7.3778E-05 834.446593238667 62.553 0.29026 62.065 61.915 62.206 -0.48764 28 13 3 0 0 0 0.30562 1 34155 34155 16.942 1.0951 1 6809400 880 14202 642 648 950 950 0.016169600374723814 AHVPVPSQ 8 Unmodified _AHVPVPSQ_ 0 0 0 ENST00000393292.7_1_3:128848926-128853725:-|nuORF;ENSG00000240682|ENST00000393295|ISY1;nc|ENSG00000240682|Q9ULR0-2|ISY1;nc|ENSG00000240682|Q9ULR0-1|ISY1 ENST00000393292.7_1_3:128848926-128853725:-|nuORF ENST00000393292.7_1_3:128848926-128853725:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.4495849609375 1 834.446828 833.439552 -0.092812 -7.7447E-05 -0.65203 -0.00054408 -0.74484 -0.00062153 834.4460738655908 62.107 0.30626 62.107 61.951 62.257 0 26 14 3 0 0 0 0.80044 1 34697 34697 6.3541 1.1234 1 4142900 881 10674 643 649 951 951 0.016169600374723814 AHVQMFVKL 9 Unmodified _AHVQMFVKL_ 0 0 0 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2223510742188 3 358.203917 1071.58992 NaN NaN NaN NaN NaN NaN NaN 34.101 1 34.13 33.63 34.63 0.028934 0 0 0 0.84564 1 17963 17963 1.0715 0.10919 1 + 882 19504 644 650 952 952 0.05698983704769489 AHYEVCTKW 9 Unmodified _AHYEVCTKW_ 0 0 0 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5111389160156 3 379.511298 1135.51206 -0.79487 -0.00030166 1.1776 0.00044692 0.38275 0.00014526 379.5118027417776 32.048 0.28352 32.048 31.9 32.184 0 42 13 4 0 0 0 0.4887 1 16694 16694 8.1555 2.4237 1 10701000 + 883 22039 645 651 953 953 -0.050270739512598084 AHYGTPTVSPH 11 Unmodified _AHYGTPTVSPH_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7821655273438 2 583.783087 1165.55162 -0.60304 -0.00035204 -0.0065559 -3.8272E-06 -0.60959 -0.00035587 583.7827384817787 27.457 0.15234 27.457 27.377 27.53 0 15 7 3 0 0 0 0.37677 1 14151 14151 22.736 9.6938 1 2888200 + 884 18767 646 652 954 954 -0.02453230676178464 AHYGTPTVSPH 11 Unmodified _AHYGTPTVSPH_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MSMS AL20221201_MKP_PDAC_01 4 583.7825317382812 2 583.783087 1165.55162 NaN NaN NaN NaN NaN NaN NaN 30.873 1 27.376 26.876 27.876 -3.497 0 0 0 0.30911 1 17452 17452 32.786 5.902 1 + 885 18767 646 652 955 955 -0.02453230676178464 AHYGTPTVSPH 11 Unmodified _AHYGTPTVSPH_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.783087 1165.55162 -0.60304 -0.00035204 -0.0065559 -3.8272E-06 -0.60959 -0.00035587 583.7827384817787 27.457 0.15234 27.457 27.377 27.53 0 0.09038 -6.3315E-05 NaN 22.736 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2888200 + 886 18767 646 652 -0.02453230676178464 AHYGTPTVSPH 11 Unmodified _AHYGTPTVSPH_ 0 0 0 REV__ENSG00000111676|ENST00000396684|ATN1 REV__ENSG00000111676|ENST00000396684|ATN1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 583.783087 1165.55162 1.0002 0.00058393 0.12696 7.412E-05 1.1272 0.00065805 583.7828127908808 30.773 0.15559 27.276 27.211 27.366 -3.497 -0.09038 9.2579E-05 NaN 22.736 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 12006000 + 887 18767 646 652 -0.02453230676178464 AHYKDMGKF 9 Unmodified _AHYKDMGKF_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1798706054688 3 366.17966 1095.51715 0.17558 6.4294E-05 0.39396 0.00014426 0.56954 0.00020855 366.5141867191233 26.644 0.21289 26.673 26.569 26.781 0.028664 14 8 2 0 0 0 0.08691 1 13834 13834 27.223 2.2323 1 7533100 888 2701 647 653 956 956 -0.026787700886416133 AIAAVIARF 9 Unmodified _AIAAVIARF_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;ENSG00000165949|ENST00000612813|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.290283203125 2 466.28982 930.565087 0.94288 0.00043966 -0.54807 -0.00025556 0.39481 0.0001841 466.2895694817345 64.14 0.4182 64.13 63.919 64.338 -0.010536 61 20 4 0 0 0 0.0048787 2 35045 35045;35152 117.6 64.023 1 44602000 889 16353 648 654 957;958 957 0.09702671893694514 AIAEVWAH 8 Unmodified _AIAEVWAH_ 0 0 0 ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7356872558594 2 448.734877 895.455202 NaN NaN NaN NaN NaN NaN NaN 80.306 1 79.817 79.317 80.317 -0.48932 0 0 0 0.95973 1 43982 43982 8.5933 4.6489 1 890 13158 649 655 959 959 0.0032924655450869977 AIAINRYCYIC 11 Unmodified _AIAINRYCYIC_ 0 0 0 ENSG00000134640|ENST00000257068|MTNR1B;ENSG00000102195|ENST00000218316|GPR50 ENSG00000134640|ENST00000257068|MTNR1B;ENSG00000102195|ENST00000218316|GPR50 ENSG00000134640|ENST00000257068|MTNR1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.882568359375 3 434.882626 1301.62605 NaN NaN NaN NaN NaN NaN NaN 29.107 1 29.137 28.637 29.637 0.030106 0 0 0 0.94165 1 15176 15176 1.3296 0.70282 1 891 4626;2027 650 656 960 960 -0.012699271806695833 AIAISLAQDI 10 Unmodified _AIAISLAQDI_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7951049804688 2 507.795132 1013.57571 0.575 0.00029198 -0.12129 -6.1591E-05 0.4537 0.00023039 507.79506851611626 74.748 0.56286 74.748 74.497 75.06 0 79 27 5 0 0 0 0.69064 1 41748 41748 3.9444 0 1 27058000 892 9258 651 657 961 961 0.06946609757460465 AIARLVRRP 9 Unmodified _AIARLVRRP_ 0 0 0 ENST00000438259.6_1_3:42544112-42573011:+|nuORF ENST00000438259.6_1_3:42544112-42573011:+|nuORF ENST00000438259.6_1_3:42544112-42573011:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.2332763671875 3 351.233087 1050.67743 NaN NaN NaN NaN NaN NaN NaN 46.721 1 41.64 41.14 42.14 -5.0805 0 0 0 0.84021 1 28913 28913 2.7352 0.64919 1 893 13360 652 658 962 962 0.1541194569056188 AIAVNTSREAM 11 Unmodified _AIAVNTSREAM_ 0 0 0 REV__ENSG00000162771|ENST00000294829|GARIN4 REV__ENSG00000162771|ENST00000294829|GARIN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7999877929688 2 581.79788 1161.58121 NaN NaN NaN NaN NaN NaN NaN 57.014 1 56.528 56.028 57.028 -0.48554 0 0 0 0.82644 1 30980 30980 10.8 2.644 1 + 894 21689 653 659 963 963 0.006879652776433431 AIAYFISF 8 Unmodified _AIAYFISF_ 0 0 0 nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F nc|ENSG00000102001|O60840-5|CACNA1F nc|ENSG00000102001|O60840-5|CACNA1F MSMS AL20221201_MKP_PDAC_01 4 466.2484436035156 2 466.249829 930.485105 NaN NaN NaN NaN NaN NaN NaN 64.496 1 58.321 57.821 58.821 -6.1757 0 0 0 0.9249 1 41789 41789 15.768 0 1 895 2008 654 660 964 964 0.017081854998423296 AICAALTA 8 Unmodified _AICAALTA_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1988525390625 2 367.199282 732.384011 -0.65235 -0.00023954 -0.080132 -2.9425E-05 -0.73248 -0.00026897 367.19908783467474 48.691 0.31718 48.691 48.511 48.828 0 21 14 2 0 0 0 0.81107 1 26728 26728 0 0 1 3658000 896 3258 655 661 965 965 0.007114105254686365 AICAALTA 8 Unmodified _AICAALTA_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.198974609375 2 367.199282 732.384011 0.31795 0.00011675 -0.82553 -0.00030313 -0.50758 -0.00018638 367.19887740148295 49.204 0.26794 49.204 49.105 49.373 0 26 12 3 0 0 0 0.81107 1 27050 27050 0 0 1 4327500 897 3258 655 661 966 966 0.007114105254686365 AICAALTA 8 Unmodified _AICAALTA_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1994934082031 2 367.199282 732.384011 0.38761 0.00014233 -0.48729 -0.00017893 -0.09968 -3.6602E-05 367.19901394192675 49.21 0.35416 49.166 48.982 49.336 -0.04369 39 16 3 0 0 0 0.81107 2 26537 26537;26639 0 0 1 9389700 898 3258 655 661 967;968 967 0.007114105254686365 AICPNNHEV 9 Carbamidomethyl (C) _AIC(Carbamidomethyl (C))PNNHEV_ AIC(1)PNNHEV AIC(59)PNNHEV 0 1 0 ENST00000484600.6_1_7:98983337-98987636:+|nuORF;ENST00000484375.5_1_7:98972330-98988614:+|nuORF;ENSG00000130429|ENST00000646101|ARPC1B ENST00000484600.6_1_7:98983337-98987636:+|nuORF ENST00000484600.6_1_7:98983337-98987636:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2428588867188 2 527.242741 1052.47093 0.26339 0.00013887 -0.55412 -0.00029216 -0.29073 -0.00015329 527.2426826646033 24.616 0.28653 21.733 21.617 21.904 -2.8831 33 15 3 0 0 0 0.024882 1 13450 13450 58.679 18.23 1 3589300 899 4212 656 662 969 969 420 -0.05320834990743606 AICRPLPVTF 10 Carbamidomethyl (C) _AIC(Carbamidomethyl (C))RPLPVTF_ AIC(1)RPLPVTF AIC(120)RPLPVTF 0 1 0 ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC ENSG00000119929|ENST00000370476|CUTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3264770507812 2 587.326076 1172.6376 0.76518 0.00044941 -0.64761 -0.00038036 0.11757 6.9051E-05 587.325796464028 70.161 0.64741 63.985 63.615 64.262 -6.1757 76 36 3 0 0 0 0.00013919 3 45892 45632;45756;45892 118.07 77.829 1 54330000 900 3481 657 663 970;971;972 972 350 0.05818637904962998 AIDEVLEKV 9 Unmodified _AIDEVLEKV_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7857971191406 2 508.28714 1014.55973 0.60918 0.00030964 -4.3166 -0.0021941 -3.7074 -0.0018844 508.7857412754489 53.126 0.27771 53.126 53.003 53.281 0 38 12 4 0 0 0 0.10247 1 29468 29468 32.786 4.2988 1 7219800 901 8967 658 664 973 973 0.05302903520578184 AIDGEDLARIP 11 Unmodified _AIDGEDLARIP_ 0 0 0 REV__ENSG00000161057|ENST00000292644|PSMC2 REV__ENSG00000161057|ENST00000292644|PSMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5443115234375 3 390.543544 1168.6088 1.2093 0.00047227 0.95148 0.00037159 2.1607 0.00084387 390.5438205806214 32.102 0.82725 28.406 28.086 28.914 -3.6958 111 46 3 0 0 0 0.557 1 18238 18238 13.519 0.66272 1 101830000 + 902 21585 659 665 974 974 0.031241918095247456 AIDLTAMQPR 10 Unmodified _AIDLTAMQPR_ 0 0 0 REV__ENSG00000148795|ENST00000369887|CYP17A1 REV__ENSG00000148795|ENST00000369887|CYP17A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2593994140625 2 558.297516 1114.58048 0.88081 0.00049175 0.17118 9.5572E-05 1.052 0.00058733 558.297775066488 73.249 0.17508 72.773 72.674 72.849 -0.47588 16 7 3 0 0 0 0.22811 1 40111 40111 14.838 2.3067 1 827310 + 903 20969 660 666 975 975 0.02777170628564818 AIDPHLLLSV 10 Unmodified _AIDPHLLLSV_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.286865234375 2 539.318774 1076.623 -0.14444 -7.7897E-05 1.7796 0.00095975 1.6351 0.00088185 539.3198921718542 78.7 0.21033 78.214 78.084 78.295 -0.48596 12 7 2 0 0 0 0.21783 1 43100 43100 24.021 7.0783 1 781690 904 3605 661 667 976 976 0.08774889028472899 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2677917480469 2 481.269281 960.52401 -0.18184 -8.7516E-05 -0.084315 -4.0578E-05 -0.26616 -0.00012809 481.26884209264017 29.16 0.10057 29.16 29.102 29.202 0 6 4 2 0 0 0 0.078314 1 15112 15112 38.176 5.8701 1 771110 905 4921 662 668 977 977 0.042168660635638844 AIDRVTTSV 9 Unmodified _AIDRVTTSV_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MSMS AL20221201_MKP_PDAC_01 4 481.2703552246094 2 481.269281 960.52401 NaN NaN NaN NaN NaN NaN NaN 33.668 1 29.683 29.183 30.183 -3.9853 0 0 0 0.061161 1 19329 19329 53.404 21.099 1 906 4921 662 668 978 978 0.042168660635638844 AIDVCHLSS 9 Unmodified _AIDVCHLSS_ 0 0 0 REV__ENST00000432315.1_1_3:168384535-168384853:+|nuORF REV__ENST00000432315.1_1_3:168384535-168384853:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2296752929688 2 472.728935 943.443317 -0.18718 -8.8484E-05 -0.92785 -0.00043862 -1.115 -0.0005271 472.7286502108737 20.994 0.14579 20.994 20.943 21.089 0 30 21 2 0 0 0 0.41742 1 10581 10581 11.64 0.52583 1 861130 + 907 26987 663 669 979 979 -0.03066738250970502 AIDVCKKLL 9 Unmodified _AIDVCKKLL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7820739746094 2 501.804445 1001.59434 0.3347 0.00016795 -4.367 -0.0021914 -4.0323 -0.0020234 502.30391661358846 62.149 0.15593 61.662 61.57 61.726 -0.48764 8 6 2 0 0 0 0.17666 1 33864 33864 19.439 1.304 1 746950 908 5897 664 670 980 980 0.09360448127688414 AIDVILEGY 9 Unmodified _AIDVILEGY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7686462402344 2 496.768583 991.522613 0.45568 0.00022637 -0.06884 -3.4197E-05 0.38685 0.00019217 496.7684979633854 74.584 0.52704 74.584 74.342 74.869 0 68 23 4 0 0 0 0.39863 1 41619 41619 12.532 0.89125 1 33309000 909 6517 665 671 981 981 0.026512319748121627 AIDVILEGY 9 Unmodified _AIDVILEGY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5294799804688 1 992.529889 991.522613 0.62994 0.00062523 -1.49 -0.0014789 -0.86004 -0.00085362 992.5285560446463 75.098 0.30619 74.621 74.453 74.759 -0.47714 28 13 3 0 0 0 0.2001 1 41166 41166 23.148 1.4018 1 4001400 910 6517 665 671 982 982 0.026512319748121627 AIDVMFRI 8 Unmodified _AIDVMFRI_ 0 0 0 REV__ENSG00000092445|ENST00000263798|TYRO3 REV__ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7650146484375 2 482.767863 963.521173 0.60225 0.00029075 1.4475 0.00069881 2.0498 0.00098956 482.7682537674275 86.117 0.60519 85.613 85.227 85.833 -0.50318 53 24 3 0 0 0 0.77907 2 47073 47073;47210 10.183 2.8712 1 1016000 + 911 17912 666 672 983;984 983 0.037953194050714956 AIEKIDKTEF 10 Unmodified _AIEKIDKTEF_ 0 0 0 REV__nc|ENSG00000156110|P55263-3|ADK REV__nc|ENSG00000156110|P55263-3|ADK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5527038574219 3 398.551928 1192.63395 0.40351 0.00016082 1.4371 0.00057276 1.8406 0.00073359 398.5523268843669 38.685 0.19244 38.685 38.598 38.79 0 14 8 2 0 0 0 0.69377 1 20709 20709 1.7423 0.14999 1 783700 + 912 21312 667 673 985 985 0.04534246612092829 AIEKIDKTEF 10 Unmodified _AIEKIDKTEF_ 0 0 0 REV__nc|ENSG00000156110|P55263-3|ADK REV__nc|ENSG00000156110|P55263-3|ADK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 398.551928 1192.63395 0.40351 0.00016082 1.4371 0.00057276 1.8406 0.00073359 398.5523268843669 38.685 0.19244 38.685 38.598 38.79 0 0 0 NaN 1.7423 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 783700 + 913 21312 667 673 0.04534246612092829 AIELPDYL 8 Unmodified _AIELPDYL_ 0 0 0 ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2 ENSG00000118985|ENST00000237853|ELL2 ENSG00000118985|ENST00000237853|ELL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.4971923828125 1 933.492775 932.485499 0.35698 0.00033324 -0.3352 -0.00031291 0.021778 2.033E-05 933.4929933781158 92.623 0.17514 92.165 92.109 92.284 -0.4574 11 7 2 0 0 0 0.80975 1 50686 50686 0.79363 0 1 510080 914 3406 668 674 986 986 0.016555604290260817 AIEQLLADL 9 Unmodified _AIEQLLADL_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2817077636719 2 493.281857 984.549162 0.56395 0.00027819 0.43505 0.0002146 0.999 0.00049279 493.28201789811897 82.558 0.44541 76.383 76.215 76.661 -6.1757 44 25 2 0 0 0 0.06294 1 54255 54255 41.84 7.4379 1 15811000 + 915 18474 669 675 987 987 0.05626920866131968 AIEVALQNI 9 Unmodified _AIEVALQNI_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7668832-7673976:+|nuORF ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.2653503417969 2 485.782025 969.549496 0.86461 0.00042001 2.3759 0.0011542 3.2405 0.0015742 485.78267534501606 73.156 0.32591 66.98 66.753 67.079 -6.1757 16 15 2 0 0 0 0.19613 1 47799 47799 7.9102 3.9658 1 6472000 916 9210 670 676 988 988 0.0635034058598194 AIEYRPENY 9 Unmodified _AIEYRPENY_ 0 0 0 ENSG00000182670|ENST00000418766|TTC3;ENST00000460328.5_1_21:38463688-38468944:+|nuORF;nc|ENSG00000182670|P53804-2|TTC3 ENSG00000182670|ENST00000418766|TTC3 ENSG00000182670|ENST00000418766|TTC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7781982421875 2 577.77747 1153.54039 0.58135 0.00033589 -0.6648 -0.0003841 -0.083443 -4.8212E-05 577.7769076066093 84.356 0.46869 83.856 83.645 84.114 -0.49961 59 21 4 0 0 0 0.39863 1 46187 46187 12.532 1.0368 1 9166600 917 9076 671 677 989 989 -0.03024052770342678 AIFGLCCWNLF 11 Unmodified _AIFGLCCWNLF_ 0 0 0 REV__ENSG00000185885|ENST00000408968|IFITM1 REV__ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8057861328125 2 643.806662 1285.59877 0.27905 0.00017965 -0.41739 -0.00026872 -0.13834 -8.9065E-05 643.8064880463797 89.07 0.33527 88.566 88.416 88.751 -0.50423 32 14 3 0 0 0 0.71036 1 48672 48672 3.2813 1.4371 1 863050 + 918 23530 672 678 990 990 -0.03260410721077278 AIFGPPNTYYE 11 Unmodified _AIFGPPNTYYE_ 0 0 0 ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34 ENST00000586788.1_1_19:531880-536341:+|nuORF ENST00000586788.1_1_19:531880-536341:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.5357360839844 3 424.536278 1270.587 -0.52667 -0.00022359 -0.25069 -0.00010643 -0.77736 -0.00033002 424.53617298355044 18.166 0.17016 18.166 18.077 18.247 0 37 21 2 0 0 0 0.73115 1 9005 9005 0.45452 0.087843 1 766250 919 1709 673 679 991 991 -0.03746612939062288 AIFVALFFL 9 Unmodified _AIFVALFFL_ 0 0 0 nc|ENSG00000177575|Q86VB7-4|CD163;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF nc|ENSG00000177575|Q86VB7-4|CD163 nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7682495117188 2 520.812596 1039.61064 -0.21544 -0.0001122 -2.4419 -0.0012718 -2.6573 -0.001384 521.3127639848815 78.558 0.22328 78.072 77.99 78.213 -0.48596 13 8 2 0 0 0 0.203 1 42995 42995 5.2307 0.47466 1 655270 920 16406 674 680 992 992 0.09241897356082518 AIFWFDLRSI 10 Unmodified _AIFWFDLRSI_ 0 0 0 ENSG00000188691|ENST00000532411|OR56A5;ENSG00000183389|ENST00000641156|OR56A4 ENSG00000188691|ENST00000532411|OR56A5 ENSG00000188691|ENST00000532411|OR56A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3442993164062 2 634.345323 1266.67609 NaN NaN NaN NaN NaN NaN NaN 85.097 1 85.097 84.597 85.597 0 0 0 0 0.98914 1 47166 47166 1.8442 0.19162 1 921 9144 675 681 993 993 0.05342266811135232 AIGGSGSTFIY 11 Unmodified _AIGGSGSTFIY_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825734-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7700805664062 2 536.769114 1071.52368 0.673 0.00036125 -0.51625 -0.0002771 0.15676 8.4144E-05 536.7685490787718 67.122 0.40063 60.946 60.73 61.13 -6.1757 37 21 2 0 0 0 0.22708 1 43702 43702 30.637 11.38 1 29984000 922 10669 676 682 994 994 -0.00922553656278069 AIGSAEIGEPA 11 Unmodified _AIGSAEIGEPA_ 0 0 0 ENST00000506535.1_1_4:185631525-185635040:-|nuORF ENST00000506535.1_1_4:185631525-185635040:-|nuORF ENST00000506535.1_1_4:185631525-185635040:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7952575683594 2 507.758746 1013.50294 0.60418 0.00030678 2.0499 0.0010408 2.6541 0.0013476 507.7596771059456 74.596 0.26547 74.596 74.428 74.693 0 25 11 3 0 0 0 0.097163 1 41532 41532 49.933 17.628 1 2757200 923 14523 677 683 995 995 -0.003271440359526423 AIGTKHLTT 9 Unmodified _AIGTKHLTT_ 0 0 0 REV__ENST00000418058.1_1_1:65270770-65280577:+|nuORF REV__ENST00000418058.1_1_1:65270770-65280577:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 471.6416931152344 2 471.274367 940.53418 NaN NaN NaN NaN NaN NaN NaN 104.28 1 98.107 97.607 98.607 -6.1757 0 0 0 0.84737 1 69849 69849 1.8442 1.0506 1 + 924 21648 678 684 996 996 0.061534737887996016 AIGVDFPVK 9 Unmodified _AIGVDFPVK_ 0 0 0 ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2 ENSG00000174428|ENST00000472837|GTF2IRD2B ENSG00000174428|ENST00000472837|GTF2IRD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.273193359375 2 473.273835 944.533118 0.66483 0.00031465 -0.95054 -0.00044987 -0.28571 -0.00013522 473.27348281378784 30.419 0.13399 30.338 30.28 30.414 -0.080431 7 4 2 0 0 0 0.07916 1 15814 15814 37.974 7.3375 1 666450 925 8418 679 685 997 997 0.05863259419891165 AIGYFEQQL 9 Unmodified _AIGYFEQQL_ 0 0 0 ENSG00000100154|ENST00000397906|TTC28 ENSG00000100154|ENST00000397906|TTC28 ENSG00000100154|ENST00000397906|TTC28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2508544921875 2 534.771657 1067.52876 0.68812 0.00036799 1.1876 0.00063508 1.8757 0.0010031 534.7724857598259 75.306 0.18806 74.829 74.696 74.884 -0.47714 12 8 2 0 0 0 0.203 1 41241 41241 5.2307 0.47466 1 630900 926 1762 680 686 998 998 -0.002302497936625514 AIGYVAFVDKI 11 Unmodified _AIGYVAFVDKI_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3392333984375 2 598.339707 1194.66486 0.55801 0.00033388 0.29141 0.00017436 0.84942 0.00050824 598.3399559139098 57.182 0.25743 56.693 56.6 56.858 -0.48974 17 11 2 0 0 0 0.48615 1 31099 31099 17.113 0.1706 1 1941000 + 927 17439 681 687 999 999 0.0753144471698306 AIGYVAFVDKI 11 Unmodified _AIGYVAFVDKI_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3403930664062 2 598.339707 1194.66486 0.24189 0.00014473 -0.11994 -7.1765E-05 0.12194 7.2965E-05 598.3395957365376 80.361 0.21899 74.186 74.097 74.316 -6.1757 14 11 2 0 0 0 0.37677 1 52760 52760 22.736 0 1 9739800 + 928 17439 681 687 1000 1000 0.0753144471698306 AIHHFIEGV 9 Unmodified _AIHHFIEGV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7737731933594 2 511.774534 1021.53451 -0.57221 -0.00029284 -0.0068937 -3.528E-06 -0.5791 -0.00029637 511.7743568922031 36.596 0.17401 36.346 36.253 36.427 -0.2497 13 7 2 0 0 0 0.058206 1 19227 19227 42.968 24.833 1 3550300 929 3480 682 688 1001 1001 0.02460893508657591 AIHHFIEGV 9 Unmodified _AIHHFIEGV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.774658203125 2 511.774534 1021.53451 0.98645 0.00050484 0.096103 4.9183E-05 1.0826 0.00055402 511.774429148091 41.08 0.35487 36.472 36.244 36.599 -4.6079 32 21 2 0 0 0 0.052168 1 24579 24579 44.407 26.272 1 8023200 930 3480 682 688 1002 1002 0.02460893508657591 AIHLWYLL 8 Unmodified _AIHLWYLL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.3004150390625 2 514.80002 1027.58549 0.76016 0.00039133 3.4897 0.0017965 4.2499 0.0021878 514.8013675423833 80.324 0.21461 74.148 73.989 74.204 -6.1757 16 12 2 0 0 0 8.7369 1 52700 52700 17.087 0.14425 1 18944000 931 2734 683 689 1003 1003 0.07279842553521121 AIHSPCEGEC 10 Unmodified _AIHSPCEGEC_ 0 0 0 REV__ENST00000464515.1_1_7:41729250-41730808:-|nuORF REV__ENST00000464515.1_1_7:41729250-41730808:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2095336914062 2 523.207509 1044.40047 1.1066 0.000579 -2.1525 -0.0011262 -1.0458 -0.0005472 523.20628388002 54.341 0.56808 54.341 54.173 54.741 0 57 24 4 0 0 0 0.69064 1 30251 30251 3.9444 1.0552 1 6035800 + 932 19349 684 690 1004 1004 -0.11995876370701808 AIIDDELQL 9 Unmodified _AIIDDELQL_ 0 0 0 REV__ENSG00000205301|ENST00000511113|MGAT4D REV__ENSG00000205301|ENST00000511113|MGAT4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2771606445312 2 515.276772 1028.53899 0.19311 9.9507E-05 -1.0119 -0.00052139 -0.81876 -0.00042189 515.2761941346453 62.459 0.49223 62.459 62.257 62.749 0 109 29 5 0 0 0 0.37804 1 34980 34980 13.508 1.8676 1 207010000 + 933 24220 685 691 1005 1005 0.02586313140909624 AIIDDELQL 9 Unmodified _AIIDDELQL_ 0 0 0 REV__ENSG00000205301|ENST00000511113|MGAT4D REV__ENSG00000205301|ENST00000511113|MGAT4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2776489257812 2 515.276772 1028.53899 0.38446 0.0001981 -0.20179 -0.00010398 0.18267 9.4128E-05 515.2763518433433 62.974 0.32435 62.488 62.385 62.709 -0.48617 35 15 3 0 0 0 0.37804 1 34437 34437 13.508 1.8676 1 9600900 + 934 24220 685 691 1006 1006 0.02586313140909624 AIIDNRMA 8 Unmodified _AIIDNRMA_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2386779785156 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 54.336 1 54.269 53.769 54.769 -0.066936 0 0 0 0.97444 1 29505 29505 5.2307 2.6532 1 + 935 18621 686 692 1007 1007 0.009252718485413425 AIIESTPEL 9 Unmodified _AIIESTPEL_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;ENST00000514613.5_1_17:49067015-49156972:-|nuORF nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7678527832031 2 486.76604 971.517527 0.55716 0.0002712 -0.42875 -0.0002087 0.1284 6.2502E-05 486.76555029820946 57.52 0.31036 57.52 57.346 57.657 0 22 14 2 0 0 0 0.18465 1 31970 31970 24.674 7.7316 1 5730200 936 384 687 693 1008 1008 0.030629281121719032 AIIESTPEL 9 Unmodified _AIIESTPEL_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;ENST00000514613.5_1_17:49067015-49156972:-|nuORF nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.5267944335938 1 972.524804 971.517527 0.46185 0.00044916 -1.0738 -0.0010443 -0.61198 -0.00059516 972.5238443611786 57.52 0.26202 57.52 57.371 57.633 0 21 12 2 0 0 0 0.087258 1 31972 31972 36.044 7.5574 1 6338700 937 384 687 693 1009 1009 0.030629281121719032 AIIQINLA 8 Unmodified _AIIQINLA_ 0 0 0 REV__nc|ENSG00000114374|O00507-2|USP9Y REV__nc|ENSG00000114374|O00507-2|USP9Y MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2695617675781 2 428.268553 854.522553 NaN NaN NaN NaN NaN NaN NaN 84.564 1 84.065 83.565 84.565 -0.49961 0 0 0 0.97444 1 46275 46275 0.79363 0 1 + 938 18910 688 694 1010 1010 0.08947276765445622 AIISELVSI 9 Unmodified _AIISELVSI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7872924804688 2 472.786776 943.558998 0.54638 0.00025832 -0.26932 -0.00012733 0.27706 0.00013099 472.78669334137703 88.293 0.35109 87.789 87.561 87.912 -0.50423 22 15 2 0 0 0 0.10925 2 48248 48248;48348 32.117 3.6301 1 1142300 939 2711 689 695 1011;1012 1011 0.08496108871520391 AIISELVSI 9 Unmodified _AIISELVSI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7874145507812 2 472.786776 943.558998 0.93784 0.0004434 -0.30974 -0.00014644 0.6281 0.00029696 472.78662664860155 91.534 0.81664 85.358 84.956 85.773 -6.1757 90 45 3 0 0 0 0.03327 1 60403 60403 53.576 11.481 1 15129000 940 2711 689 695 1013 1013 0.08496108871520391 AIISELVSI 9 Unmodified _AIISELVSI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7872619628906 2 472.786776 943.558998 0.91277 0.00043155 -0.042096 -1.9902E-05 0.87068 0.00041164 472.7869719731423 99.268 0.15075 93.092 93.009 93.159 -6.1757 20 8 3 0 0 0 0.019979 1 66056 66056 63.563 19.156 1 43970000 941 2711 689 695 1014 1014 0.08496108871520391 AIISELVSI 9 Unmodified _AIISELVSI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 944.5658569335938 1 944.566275 943.558998 0.32891 0.00031068 -0.77727 -0.00073418 -0.44836 -0.00042351 944.565642260578 99.26 0.080276 93.085 93.048 93.128 -6.1757 6 4 2 0 0 0 0.016184 1 66064 66064 67.344 5.9864 1 19800000 942 2711 689 695 1015 1015 0.08496108871520391 AIIYHMFEV 9 Unmodified _AIIYHMFEV_ 0 0 0 REV__nc|ENSG00000100029|O00541-2|PES1 REV__nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7874755859375 2 561.786253 1121.55795 0.24413 0.00013715 1.2145 0.00068229 1.4586 0.00081943 561.7869954907 72.048 0.23354 72.048 71.904 72.137 0 14 10 2 0 0 0 0.39863 1 40119 40119 12.532 0 1 547300 + 943 18004 690 696 1016 1016 0.0020357123096346186 AIKHSRPG 8 Unmodified _AIKHSRPG_ 0 0 0 nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.12|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2539978027344 2 433.253769 864.492984 0.54434 0.00023584 0.071048 3.0782E-05 0.61539 0.00026662 433.2537607230346 27.964 0.53043 24.815 24.547 25.077 -3.1482 90 28 4 0 0 0 0.73714 1 15546 15546 13.906 2.2658 1 207640000 944 2209 691 697 1017 1017 0.05531757539995397 AIKKETESMF 10 Unmodified _AIKKETESMF_ 0 0 0 REV__ENSG00000005175|ENST00000005386|RPAP3 REV__ENSG00000005175|ENST00000005386|RPAP3 MSMS AL20221201_MKP_PDAC_01 4 394.845947265625 3 395.205763 1182.59546 NaN NaN NaN NaN NaN NaN NaN 93.388 1 87.213 86.713 87.713 -6.1757 0 0 0 0.92825 1 61810 61810 3.5871 0.95582 1 + 945 16963 692 698 1018 1018 0.011466177059219262 AIKNVNTAL 9 Unmodified _AIKNVNTAL_ 0 0 0 nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1 nc|ENSG00000159593|Q13564-3|NAE1 nc|ENSG00000159593|Q13564-3|NAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2827453613281 2 472.282192 942.549831 0.19759 9.3317E-05 0.15698 7.4138E-05 0.35456 0.00016745 472.28234098819524 31.175 0.14303 31.175 31.091 31.234 0 11 6 2 0 0 0 0.2143 1 16229 16229 21.747 4.8044 1 975840 946 6663 693 699 1019 1019 0.07625760305836593 AIKNVNTAL 9 Unmodified _AIKNVNTAL_ 0 0 0 nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1 nc|ENSG00000159593|Q13564-3|NAE1 nc|ENSG00000159593|Q13564-3|NAE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2821655273438 2 472.282192 942.549831 0.55737 0.00026324 -0.28813 -0.00013608 0.26924 0.00012716 472.2820385224131 35.361 0.34384 31.266 31.105 31.449 -4.0951 32 20 2 0 0 0 0.013041 1 20483 20483 71.922 0.78869 1 10952000 947 6663 693 699 1020 1020 0.07625760305836593 AIKSFRQSGF 10 Unmodified _AIKSFRQSGF_ 0 0 0 REV__ENSG00000133048|ENST00000255409|CHI3L1 REV__ENSG00000133048|ENST00000255409|CHI3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8125610351562 2 570.811648 1139.60874 -0.44744 -0.0002554 1.1612 0.00066282 0.71374 0.00040741 570.8121392511944 32.019 0.18473 32.019 31.92 32.105 0 13 8 2 0 0 0 0.66569 1 16726 16726 6.7232 1.4925 1 1050400 + 948 19901 694 700 1021 1021 0.04452236600195647 AIKTLRKSI 9 Unmodified _AIKTLRKSI_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.284912109375 2 515.342584 1028.67061 NaN NaN NaN NaN NaN NaN NaN 84.812 1 84.312 83.812 84.812 -0.49961 0 0 0 0.84369 1 46409 46409 2.3027 0 1 949 6644 695 701 1022 1022 0.15742588019315917 AILDINRLG 9 Unmodified _AILDINRLG_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2977905273438 2 492.795466 983.57638 0.49213 0.00024252 1.0381 0.00051156 1.5302 0.00075408 492.79609457169 58.07 0.27245 57.58 57.43 57.702 -0.48974 23 12 2 0 0 0 0.17718 1 31553 31553 20.454 0 1 3719700 950 7097 696 702 1023 1023 0.08393449197194514 AILDINRLG 9 Unmodified _AILDINRLG_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7951965332031 2 492.795466 983.57638 0.72074 0.00035518 0.17233 8.4926E-05 0.89307 0.0004401 492.79527985758295 65.145 0.44312 58.969 58.666 59.11 -6.1757 41 24 2 0 0 0 0.03568 1 42196 42196 52.268 2.3353 1 13038000 951 7097 696 702 1024 1024 0.08393449197194514 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2944946289062 2 496.294768 990.574983 0.51803 0.00025709 -0.55543 -0.00027565 -0.037399 -1.8561E-05 496.29450015995053 57.184 0.31895 56.694 56.539 56.858 -0.48974 34 14 3 0 0 0 0.036857 1 31035 31035 51.63 3.284 1 11140000 952 8198 697 703 1025 1025 0.07931815108429419 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2956848144531 2 496.294768 990.574983 0.72374 0.00035919 -0.21004 -0.00010424 0.5137 0.00025495 496.2945941642904 56.859 0.21825 56.79 56.638 56.857 -0.068737 20 10 2 0 0 0 0.036857 1 30908 30908 51.63 13.656 1 5566900 953 8198 697 703 1026 1026 0.07931815108429419 AILEKVFTA 9 Unmodified _AILEKVFTA_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2950439453125 2 496.294768 990.574983 0.95052 0.00047174 1.4637 0.00072645 2.4143 0.0011982 496.29556874226955 63.456 0.54419 57.281 57.019 57.564 -6.1757 60 30 3 0 0 0 0.022461 2 40907 40907;41058 61.09 15.859 1 32324000 954 8198 697 703 1027;1028 1027 0.07931815108429419 AILEQDGPACI 11 Unmodified _AILEQDGPACI_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.283447265625 2 565.281531 1128.54851 0.61188 0.00034589 -2.1243 -0.0012008 -1.5124 -0.00085495 565.280320811709 57.518 0.26202 57.518 57.371 57.633 0 28 12 3 0 0 0 0.18636 1 31990 31990 32.786 0.4802 1 19761000 + 955 24033 698 704 1029 1029 -0.010622418452385318 AILGSVTF 8 Unmodified _AILGSVTF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.4607543945312 1 807.461081 806.453805 1.5318 0.0012369 -0.52503 -0.00042394 1.0068 0.00081294 807.4605854400869 81.498 0.29565 75.322 75.167 75.462 -6.1757 21 16 2 0 0 0 0.13235 2 53417 53417;53542 90.836 12.391 1 9117700 956 3388 699 705 1030;1031 1030 0.04283612465769693 AILHSEDSL 9 Unmodified _AILHSEDSL_ 0 0 0 ENSG00000166275|ENST00000339834|BORCS7 ENSG00000166275|ENST00000339834|BORCS7 ENSG00000166275|ENST00000339834|BORCS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7537231445312 2 492.753464 983.492375 NaN NaN NaN NaN NaN NaN NaN 87.105 1 87.105 86.605 87.605 0 0 0 0 0.6032 1 48239 48239 12.532 2.3482 1 957 7464 700 706 1032 1032 -3.126690376120678E-05 AILPGLSC 8 Unmodified _AILPGLSC_ 0 0 0 ENSG00000120952|ENST00000240189|PRAMEF2 ENSG00000120952|ENST00000240189|PRAMEF2 ENSG00000120952|ENST00000240189|PRAMEF2 MSMS AL20221201_MKP_PDAC_01 4 387.2149353027344 2 387.214932 772.415311 NaN NaN NaN NaN NaN NaN NaN 96.043 1 89.867 89.367 90.367 -6.1757 0 0 0 0.50394 1 63633 63633 40.449 8.3316 1 958 3558 701 707 1033 1033 0.019999835595967852 AILPGLSC 8 Unmodified _AILPGLSC_ 0 0 0 ENSG00000120952|ENST00000240189|PRAMEF2 ENSG00000120952|ENST00000240189|PRAMEF2 ENSG00000120952|ENST00000240189|PRAMEF2 MSMS AL20221201_MKP_PDAC_01 4 387.2147827148438 2 387.214932 772.415311 NaN NaN NaN NaN NaN NaN NaN 96.301 1 90.126 89.626 90.626 -6.1757 0 0 0 0.50394 1 63813 63813 40.449 8.3316 1 959 3558 701 707 1034 1034 0.019999835595967852 AILPQLFMV 9 Unmodified _AILPQLFMV_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;nc|ENSG00000105438|P24390-2|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2637329101562 2 516.301539 1030.58852 0.68971 0.0003561 0.1825 9.4225E-05 0.87221 0.00045032 516.3016212088072 101.7 0.083313 95.529 95.461 95.545 -6.1757 5 3 2 0 0 0 0.30562 1 68250 68250 16.942 2.3606 1 5046800 960 2322 702 708 1035 1035 0.07445349616000385 AILPTSIFL 9 Unmodified _AILPTSIFL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.5936889648438 1 974.592096 973.584819 0.60763 0.00059219 0.88791 0.00086535 1.4955 0.0014575 974.5933914153443 101.38 0.053612 95.201 95.178 95.231 -6.1757 4 2 2 0 0 0 0.019979 1 68033 68033 63.563 12.708 1 9515900 961 1832 703 709 1036 1036 0.09697003113808478 AILPTSIFL 9 Unmodified _AILPTSIFL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MSMS AL20221201_MKP_PDAC_01 4 487.8003845214844 2 487.799686 973.584819 NaN NaN NaN NaN NaN NaN NaN 101.41 1 95.239 94.739 95.739 -6.1757 0 0 0 0.27711 1 68040 68040 26.341 6.9023 1 962 1832 703 709 1037 1037 0.09697003113808478 AIMDIVIKV 9 Oxidation (M) _AIM(Oxidation (M))DIVIKV_ AIM(1)DIVIKV AIM(46)DIVIKV 0 0 1 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3046569824219 2 509.304278 1016.594 -0.096923 -4.9363E-05 -0.82462 -0.00041998 -0.92154 -0.00046934 509.3046785334047 61.708 0.25085 61.221 61.074 61.325 -0.48764 21 11 3 0 0 0 0.047788 1 33593 33593 45.7 21.679 1 1536300 963 8180 704 710 1038 1038 1388 0.08637028407827074 AIMDIVIKV 9 Oxidation (M) _AIM(Oxidation (M))DIVIKV_ AIM(1)DIVIKV AIM(54)DIVIKV 0 0 1 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3040161132812 2 509.304278 1016.594 0.47289 0.00024085 0.65207 0.0003321 1.125 0.00057295 509.30466757221694 62.203 0.2157 61.716 61.615 61.831 -0.48764 15 9 2 0 0 0 0.032796 1 33904 33904 53.833 29.812 1 1704500 964 8180 704 710 1039 1039 1388 0.08637028407827074 AIMDIVIKV 9 Unmodified _AIMDIVIKV_ 0 0 0 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.3079528808594 2 501.306821 1000.59909 1.3806 0.00069211 -0.15485 -7.7629E-05 1.2258 0.00061448 501.3067807997366 94.298 0.36826 88.122 87.947 88.315 -6.1757 41 21 2 0 0 0 0.028475 2 62407 62407;62528 56.177 27.095 1 12605000 965 8180 704 711 1040;1041 1040 0.09881332270435905 AINEEESY 8 Unmodified _AINEEESY_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7062072753906 2 477.70618 953.397806 NaN NaN NaN NaN NaN NaN NaN 31.447 1 31.447 30.947 31.947 0 0 0 0 0.97444 1 16379 16379 2.8892 0 1 966 8645 705 712 1042 1042 -0.08075685232370233 AINNQYSF 8 Unmodified _AINNQYSF_ 0 0 0 ENSG00000178188|ENST00000684370|SH2B1 ENSG00000178188|ENST00000684370|SH2B1 ENSG00000178188|ENST00000684370|SH2B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7263793945312 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 52.042 1 52.042 51.542 52.542 0 0 0 0 0.90769 1 28784 28784 18.135 4.2289 1 967 8734 706 713 1043 1043 -0.03955665033333844 AIPARKLKN 9 Unmodified _AIPARKLKN_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.3035278320312 2 505.827101 1009.63965 0.41271 0.00020876 -1.4649 -0.00074099 -1.0522 -0.00053223 505.8266868712971 46.481 0.15477 41.401 41.275 41.43 -5.0805 14 12 2 0 0 0 0.203 1 28634 28634 2.3027 0 1 18393000 968 3812 707 714 1044 1044 0.13521434705069169 AIPASPQPSL 10 Unmodified _AIPASPQPSL_ 0 0 0 REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2 REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7749328613281 2 490.7742 979.533846 NaN NaN NaN NaN NaN NaN NaN 57.378 1 57.378 56.878 57.878 0 0 0 0 0.94014 1 31929 31929 6.2058 0.44535 1 + 969 22744 708 715 1045 1045 0.04326054068940266 AIPFWYHM 8 Unmodified _AIPFWYHM_ 0 0 0 nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.282958984375 2 532.754756 1063.49496 0.87631 0.00046686 -2.8237 -0.0015043 -1.9474 -0.0010375 533.2531063325878 42.838 0.21839 38.154 38.072 38.29 -4.6846 22 13 2 0 0 0 8.7369 1 25926 25926 2.8892 0.31174 1 5970700 970 7154 709 716 1046 1046 -0.0342494976641774 AIPRQKAL 8 Unmodified _AIPRQKAL_ 0 0 0 ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.787841796875 2 448.787444 895.560336 0.51253 0.00023002 -0.83505 -0.00037476 -0.32252 -0.00014475 448.78709815809725 20.299 0.13162 20.309 20.221 20.353 0.010553 13 7 2 0 0 0 0.5953 1 10346 10346 26.341 1.6674 1 1040300 971 2686 710 717 1047 1047 0.10837787750938332 AIPRQKAL 8 Unmodified _AIPRQKAL_ 0 0 0 ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY ENSG00000109944|ENST00000227349|JHY MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7876281738281 2 448.787444 895.560336 0.27162 0.0001219 0.26191 0.00011754 0.53353 0.00023944 448.787493234438 23.035 0.29922 20.256 20.089 20.388 -2.7784 35 19 3 0 0 0 0.41521 1 12419 12419 42.968 2.5194 1 14199000 972 2686 710 717 1048 1048 0.10837787750938332 AIQDKLFQV 9 Unmodified _AIQDKLFQV_ 0 0 0 ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6 ENST00000514908.5_1_3:126423131-126653948:+|nuORF ENST00000514908.5_1_3:126423131-126653948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3038940429688 2 531.303124 1060.5917 0.23078 0.00012261 0.84404 0.00044844 1.0748 0.00057106 531.3035357751626 59.072 0.43859 58.581 58.29 58.729 -0.49079 32 20 2 0 0 0 0.013118 1 32093 32093 88.954 31.483 1 7567400 973 6667 711 718 1049 1049 0.06382315994369492 AIQDKLFQV 9 Unmodified _AIQDKLFQV_ 0 0 0 ENST00000514908.5_1_3:126423131-126653948:+|nuORF;ENSG00000159685|ENST00000290913|CHCHD6 ENST00000514908.5_1_3:126423131-126653948:+|nuORF ENST00000514908.5_1_3:126423131-126653948:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8048706054688 2 531.303124 1060.5917 0.8733 0.00046399 0.33694 0.00017902 1.2102 0.00064301 531.3033284340044 64.904 0.54677 58.729 58.525 59.072 -6.1757 51 30 2 0 0 0 0.016848 2 42028 42028;42192 80.676 16.716 1 23592000 974 6667 711 718 1050;1051 1050 0.06382315994369492 AIQIMYQNLQQ 11 Unmodified _AIQIMYQNLQQ_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.5670776367188 3 450.567583 1348.68092 0.33645 0.00015159 -1.6023 -0.00072197 -1.2659 -0.00057037 450.5668384985699 30.406 0.24057 30.436 30.3 30.541 0.030106 23 10 3 0 0 0 0.73114 1 15884 15884 1.3296 0.11481 1 1682700 975 2194 712 719 1052 1052 0.020527828915874125 AIREGGFH 8 Unmodified _AIREGGFH_ 0 0 0 REV__ENSG00000002726|ENST00000360937|AOC1 REV__ENSG00000002726|ENST00000360937|AOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7306213378906 2 443.730126 885.4457 NaN NaN NaN NaN NaN NaN NaN 34.204 1 34.233 33.733 34.733 0.028934 0 0 0 0.97444 1 18022 18022 5.2307 0 1 + 976 16935 713 720 1053 1053 -0.0016052173099296851 AIRMTEEQLE 10 Unmodified _AIRMTEEQLE_ 0 0 0 REV__ENSG00000134463|ENST00000379215|ECHDC3 REV__ENSG00000134463|ENST00000379215|ECHDC3 MSMS AL20221201_MKP_PDAC_01 4 407.2057800292969 3 407.204422 1218.59144 NaN NaN NaN NaN NaN NaN NaN 89.273 1 83.097 82.597 83.597 -6.1757 0 0 0 0.97302 1 58923 58923 1.7423 0 1 + 977 19986 714 721 1054 1054 -0.009114717877764633 AIRNAMGSL 9 Oxidation (M) _AIRNAM(Oxidation (M))GSL_ AIRNAM(1)GSL AIRNAM(56)GSL 0 0 1 ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7500915527344 2 474.750201 947.48585 -0.19447 -9.2326E-05 -0.43392 -0.00020601 -0.6284 -0.00029833 474.74998766652436 21.913 0.21937 21.913 21.816 22.035 0 54 28 2 0 0 0 0.028475 1 11127 11127 56.177 12.319 1 2727900 978 6649 715 722 1055 1055 1164 0.01000656877261008 AIRNAMGSL 9 Oxidation (M) _AIRNAM(Oxidation (M))GSL_ AIRNAM(1)GSL AIRNAM(72)GSL 0 0 1 ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.74951171875 2 474.750201 947.48585 0.26738 0.00012694 -0.098757 -4.6885E-05 0.16862 8.0053E-05 474.7503951261974 24.523 0.33401 21.696 21.519 21.853 -2.8273 55 18 4 0 0 0 0.013041 2 13299 13299;13406 71.922 21.989 1 17794000 979 6649 715 722 1056;1057 1056 1164 0.01000656877261008 AIRNAMGSL 9 Oxidation (M) _AIRNAM(Oxidation (M))GSL_ AIRNAM(1)GSL AIRNAM(85)GSL 0 0 1 ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7503662109375 2 474.750201 947.48585 0.16434 7.8019E-05 -0.06201 -2.9439E-05 0.10233 4.858E-05 474.75031475028555 24.808 0.32515 21.925 21.758 22.083 -2.8831 46 19 3 0 0 0 0.0090948 1 13513 13513 85.272 23.915 1 21815000 980 6649 715 722 1058 1058 1164 0.01000656877261008 AIRNAMGSL 9 Unmodified _AIRNAMGSL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7532348632812 2 466.752744 931.490935 0.89476 0.00041763 2.3197 0.0010827 3.2145 0.0015004 466.7535843227849 40.712 0.88663 36.183 35.705 36.592 -4.5294 108 55 3 0 0 0 0.0082661 2 24423 24296;24423 92.491 31.134 1 77725000 981 6649 715 723 1059;1060 1060 0.02244960739869839 AIRNAMGSL 9 Unmodified _AIRNAMGSL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000427779.5_2_1:151238655-151239816:+|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 466.752744 931.490935 -0.57523 -0.00026849 3.4489 0.0016098 2.8737 0.0013413 466.7542294692939 36.242 0.18179 35.993 35.927 36.109 -0.2497 -0.095218 0.00072055 NaN 92.491 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1159200 982 6649 715 723 0.02244960739869839 AIRNLHHY 8 Unmodified _AIRNLHHY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MSMS AL20221201_MKP_PDAC_01 4 512.2774658203125 2 512.277775 1022.541 NaN NaN NaN NaN NaN NaN NaN 22.828 1 20.05 19.55 20.55 -2.7784 0 0 0 0.44807 1 12306 12306 46.921 27.482 1 983 8379;16392 716 724 1061 1061 0.030628314600335216 AIRQQSFAL 9 Unmodified _AIRQQSFAL_ 0 0 0 ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12 ENSG00000149292|ENST00000529221|TTC12 ENSG00000149292|ENST00000529221|TTC12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2933959960938 2 517.293091 1032.57163 0.60627 0.00031362 -0.32605 -0.00016866 0.28022 0.00014496 517.2928396765419 28.292 0.42746 25.144 24.952 25.38 -3.1482 39 22 2 0 0 0 0.044011 1 15725 15725 47.749 0.016709 1 13120000 984 5999 717 725 1062 1062 0.05664565054416926 AIRTVTSAL 9 Unmodified _AIRTVTSAL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2828063964844 2 466.282192 930.549831 -0.059783 -2.7876E-05 1.2757 0.00059484 1.2159 0.00056696 466.28279320788226 38.332 0.28788 38.046 37.887 38.174 -0.28687 31 12 3 0 0 0 0.029718 1 20155 20155 55.503 11.644 1 6031300 985 551 718 726 1063 1063 0.08177760305829906 AIRTVTSAL 9 Unmodified _AIRTVTSAL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2820129394531 2 466.282192 930.549831 0.002151 1.003E-06 0.55753 0.00025997 0.55968 0.00026097 466.28235534487936 37.946 0.2113 37.963 37.859 38.071 0.01704 16 9 2 0 0 0 0.040683 1 20157 20157 49.554 11.58 1 2717700 986 551 718 726 1064 1064 0.08177760305829906 AIRTVTSAL 9 Unmodified _AIRTVTSAL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2827453613281 2 466.282192 930.549831 0.64831 0.0003023 -0.21077 -9.828E-05 0.43754 0.00020402 466.2820792071779 43.217 0.37501 38.452 38.288 38.663 -4.7648 63 26 3 0 0 0 0.025842 2 26185 26185;26318 57.722 15.882 1 47653000 987 551 718 726 1065;1066 1065 0.08177760305829906 AIRTVTSAL 9 Unmodified _AIRTVTSAL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 466.282192 930.549831 0.59588 0.00027785 0.58318 0.00027193 1.1791 0.00054978 466.28264079496756 38.118 0.10032 38.118 38.028 38.129 0 0.07616 -0.00029453 NaN 55.503 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 830030 988 551 718 726 0.08177760305829906 AISESDETIWS 11 Unmodified _AISESDETIWS_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.284912109375 2 619.282783 1236.55101 NaN NaN NaN NaN NaN NaN NaN 49.992 1 49.992 49.492 50.492 0 0 0 0 0.85601 1 27540 27540 9.3831 3.6513 1 + 989 18320 719 727 1067 1067 -0.05780114906565359 AISESNINL 9 Unmodified _AISESNINL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7536010742188 2 480.753464 959.492375 0.49041 0.00023577 -0.46002 -0.00022116 0.030391 1.4611E-05 480.7531404855084 49.193 0.23309 49.193 49.083 49.316 0 18 10 2 0 0 0 0.23158 1 27069 27069 20.454 3.3407 1 2883300 990 7097 720 728 1068 1068 0.011008733096218748 AISRPSHAPL 10 Unmodified _AISRPSHAPL_ 0 0 0 REV__ENST00000252674.8_2_19:6212687-6212918:-|nuORF REV__ENST00000252674.8_2_19:6212687-6212918:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7987060546875 2 524.79854 1047.58253 0.43416 0.00022785 1.4132 0.00074163 1.8473 0.00096947 524.7986108537966 47.854 0.22658 47.816 47.68 47.907 -0.038643 15 10 2 0 0 0 0.29752 1 25796 25796 27.629 4.4804 1 3311500 + 991 24891 721 729 1069 1069 0.06063967428713113 AISTHCNLY 9 Unmodified _AISTHCNLY_ 0 0 0 ENST00000524045.6_1_8:106799777-107071320:-|nuORF;ENST00000509144.2_1_8:106809432-107072670:-|nuORF;ENST00000520594.5_1_8:106799777-107072670:-|nuORF;ENST00000520078.5_1_8:106810397-107072670:-|nuORF ENST00000524045.6_1_8:106799777-107071320:-|nuORF ENST00000524045.6_1_8:106799777-107071320:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7364196777344 2 511.242209 1020.46987 -0.37778 -0.00019314 0.53799 0.00027504 0.16021 8.1905E-05 511.24248854166484 33.185 0.49441 33.185 32.87 33.365 0 55 24 4 0 0 0 0.19891 1 17323 17323 11.64 3.7301 1 12272000 992 14575 722 730 1070 1070 -0.03955049359649365 AISTSPLL 8 Unmodified _AISTSPLL_ 0 0 0 nc|ENSG00000157613|Q96BA8-2|CREB3L1;ENSG00000157613|ENST00000621158|CREB3L1 nc|ENSG00000157613|Q96BA8-2|CREB3L1 nc|ENSG00000157613|Q96BA8-2|CREB3L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2401123046875 2 401.239461 800.46437 0.85609 0.0003435 1.7283 0.00069346 2.5844 0.001037 401.24034938471766 45.643 0.29404 40.688 40.569 40.863 -4.9549 33 19 2 0 0 0 0.5284 1 28077 28077 32.117 1.8922 1 10231000 993 6531 723 731 1071 1071 0.05615595120195849 AITAPSSREL 10 Unmodified _AITAPSSREL_ 0 0 0 REV__ENST00000520356.5_2_8:135614955-135615039:-|nuORF REV__ENST00000520356.5_2_8:135614955-135615039:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.26708984375 2 522.787838 1043.56112 0.81753 0.0004274 -0.85277 -0.00044582 -0.035236 -1.8421E-05 522.7873337087185 36.36 0.17984 36.36 36.269 36.448 0 10 8 2 0 0 0 0.19064 1 19280 19280 32.786 2.5609 1 2760300 + 994 28276 724 732 1072 1072 0.04108537609340601 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2792358398438 2 464.279118 926.543683 0.48945 0.00022724 -0.27549 -0.0001279 0.21396 9.9336E-05 464.27894423172893 43.427 0.52065 43.427 43.084 43.605 0 91 25 5 0 0 0 0.014417 3 23433 23433;23542;23655 69.105 31.131 1 276130000 995 8996 725 733 1073;1074;1075 1073 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2791442871094 2 464.279118 926.543683 0.00052704 2.447E-07 -0.011321 -5.2563E-06 -0.010794 -5.0116E-06 464.27906122174977 43.624 0.32127 43.314 43.105 43.426 -0.31039 29 14 3 0 0 0 0.013041 1 23158 23158 71.922 17.149 1 42068000 996 8996 725 733 1076 1076 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2801818847656 2 464.279118 926.543683 0.5392 0.00025034 -0.24117 -0.00011197 0.29803 0.00013837 464.2791126910287 43.209 0.24974 43.193 43.083 43.333 -0.015667 21 11 2 0 0 0 0.05483 1 23160 23160 43.772 19.752 1 5217400 997 8996 725 733 1077 1077 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2790832519531 2 464.279118 926.543683 0.96826 0.00044954 0.083488 3.8762E-05 1.0517 0.0004883 464.2791027425528 49.715 0.73531 44.176 43.846 44.581 -5.5391 141 46 5 0 0 0 0.0089732 4 30921 30921;31047;31176;31321 86.332 34.063 1 778160000 998 8996 725 733 1078;1079;1080;1081 1078 0.07747242074333371 AIVDKVPSV 9 Unmodified _AIVDKVPSV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.5526123046875 1 927.550959 926.543683 0.97406 0.00090349 -0.16786 -0.0001557 0.8062 0.00074779 927.5507405232687 49.681 0.24976 44.142 44.094 44.344 -5.5391 21 15 2 0 0 0 0.0085386 1 31058 31058 100.09 41.412 1 15640000 999 8996 725 733 1082 1082 0.07747242074333371 AIVGGINVL 9 Unmodified _AIVGGINVL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS AL20221201_MKP_PDAC_01 4 428.269775390625 2 428.268553 854.522553 NaN NaN NaN NaN NaN NaN NaN 93.911 1 87.735 87.235 88.235 -6.1757 0 0 0 0.38239 1 62192 62192 20.871 1.4322 1 1000 7904 726 734 1083 1083 0.08947276765479728 AIVKWTKSVQ 10 Unmodified _AIVKWTKSVQ_ 0 0 0 REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8 REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.75830078125 2 580.345323 1158.67609 0.46854 0.00027191 0.73298 0.00042538 1.2015 0.0006973 580.3458658720562 72.517 0.29805 72.558 72.442 72.74 0.041725 31 13 3 0 0 0 0.22769 1 39926 39926 16.149 0.90062 1 5712900 + 1001 22831 727 735 1084 1084 0.10310266811143265 AIVPQEPV 8 Unmodified _AIVPQEPV_ 0 0 0 nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7455444335938 2 426.744911 851.475269 0.40716 0.00017375 0.62272 0.00026574 1.0299 0.0004395 426.7451798837744 60.756 0.34807 60.756 60.559 60.907 0 19 14 2 0 0 0 0.72953 1 33880 33880 14.582 1.0738 1 700080 1002 286 728 736 1085 1085 0.0435899749447799 AIVRSLPSV 9 Unmodified _AIVRSLPSV_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7831420898438 2 471.292559 940.570566 0.68027 0.00032061 -1.4111 -0.00066504 -0.73083 -0.00034443 471.2918419421399 46.89 0.10023 46.553 46.503 46.604 -0.33664 6 4 2 0 0 0 0.19111 1 25134 25134 16.149 3.1066 1 1290400 1003 1125;8419 729 737 1086 1086 0.09790350685534577 AIVRSLPSV 9 Unmodified _AIVRSLPSV_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2939147949219 2 471.292559 940.570566 NaN NaN NaN NaN NaN NaN NaN 46.651 1 46.618 46.118 47.118 -0.033417 0 0 0 0.049786 1 25105 25105 57.722 15.882 1 1004 1125;8419 729 737 1087 1087 0.09790350685534577 AIWGNQGPEL 10 Unmodified _AIWGNQGPEL_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.185791015625 3 362.185579 1083.53491 0.06371 2.3075E-05 0.89507 0.00032418 0.95878 0.00034726 362.1858361962862 37.896 0.42782 37.896 37.68 38.108 0 50 20 4 0 0 0 0.68719 1 20293 20293 2.086 0 1 8427500 1005 3347 730 738 1088 1088 -0.003517315621365924 AIWHLLCSWL 10 Unmodified _AIWHLLCSWL_ 0 0 0 ENST00000539664.2_1_7:28993099-28993321:-|nuORF ENST00000539664.2_1_7:28993099-28993321:-|nuORF ENST00000539664.2_1_7:28993099-28993321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.3304443359375 2 621.328619 1240.64269 0.98817 0.00061398 1.8478 0.0011481 2.836 0.0017621 621.3299777594174 65.554 0.25546 65.554 65.408 65.664 7.6294E-06 27 11 3 0 0 0 0.50944 1 35935 35935 15.847 1.9411 1 6296700 1006 15023 731 739 1089 1089 0.0319894176757316 AIYGEVTSYVH 11 Unmodified _AIYGEVTSYVH_ 0 0 0 REV__ENSG00000105141|ENST00000427043|CASP14 REV__ENSG00000105141|ENST00000427043|CASP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8837585449219 3 413.539911 1237.5979 -0.067115 -2.7755E-05 -2.6514 -0.0010965 -2.7185 -0.0011242 413.53895032377926 19.083 0.13356 19.091 19.031 19.164 0.0078487 11 6 2 0 0 0 0.71036 1 9681 9681 1.3296 0 1 1056100 + 1007 18403 732 740 1090 1090 -0.0113921056477011 AIYISDEV 8 Unmodified _AIYISDEV_ 0 0 0 REV__ENSG00000244462|ENST00000374114|RBM12 REV__ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2323608398438 2 455.231833 908.449113 0.10305 4.6913E-05 0.73722 0.00033561 0.84027 0.00038252 455.2318869000164 40.637 0.19416 40.637 40.545 40.739 0 18 10 2 0 0 0 0.5284 1 21845 21845 32.117 1.8922 1 3923200 + 1008 24483 733 741 1091 1091 -0.008773164676654233 AIYISDEV 8 Unmodified _AIYISDEV_ 0 0 0 REV__ENSG00000244462|ENST00000374114|RBM12 REV__ENSG00000244462|ENST00000374114|RBM12 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 455.231833 908.449113 0.10305 4.6913E-05 0.73722 0.00033561 0.84027 0.00038252 455.2318869000164 40.637 0.19416 40.637 40.545 40.739 0 0.16712 0.00060383 NaN 32.117 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3923200 + 1009 24483 733 741 -0.008773164676654233 AIYISDEV 8 Unmodified _AIYISDEV_ 0 0 0 REV__ENSG00000244462|ENST00000374114|RBM12 REV__ENSG00000244462|ENST00000374114|RBM12 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 455.231833 908.449113 0.47998 0.0002185 -0.46446 -0.00021144 0.015511 7.0611E-06 455.23236287491136 45.155 0.45149 40.303 40.115 40.567 -4.852 -0.16712 -0.00049027 NaN 32.117 48 30 2 NaN NaN NaN NaN 0 NaN NaN 0 15272000 + 1010 24483 733 741 -0.008773164676654233 AIYKKLKSQE 10 Unmodified _AIYKKLKSQE_ 0 0 0 REV__ENSG00000170160|ENST00000399273|CCDC144A REV__ENSG00000170160|ENST00000399273|CCDC144A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3660278320312 2 604.355888 1206.69722 2.8498 0.0017223 -0.41798 -0.00025261 2.4318 0.0014697 604.3556241763325 97.151 1.7313 97.144 96.747 98.479 -0.007019 245 64 5 0 0 0 0.71535 1 54543 54543 1.1933 0.79263 1 177410000 + 1011 22450 734 742 1092 1092 0.10214232119983535 AIYPAKINH 9 Unmodified _AIYPAKINH_ 0 0 0 REV__ENSG00000119927|ENST00000348367|GPAM REV__ENSG00000119927|ENST00000348367|GPAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7904663085938 2 513.790184 1025.56581 0.55475 0.00028503 1.4796 0.00076018 2.0343 0.0010452 513.7908414207267 39.777 0.24732 39.782 39.668 39.915 0.0050545 29 11 3 0 0 0 0.58865 1 21173 21173 2.0598 0.21551 1 9509400 + 1012 19220 735 743 1093 1093 0.05405466542720205 AKANAEKL 8 Unmodified _AKANAEKL_ 0 0 0 ENST00000478998.5_1_3:108124174-108178278:-|nuORF;ENSG00000144821|ENST00000693548|MYH15 ENST00000478998.5_1_3:108124174-108178278:-|nuORF ENST00000478998.5_1_3:108124174-108178278:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7478637695312 2 422.747985 843.481417 -0.11663 -4.9304E-05 -0.18602 -7.8641E-05 -0.30265 -0.00012795 422.74798864600376 31.624 0.25717 31.624 31.482 31.739 0 24 12 3 0 0 0 0.26159 1 16464 16464 60.39 1.7107 1 3667700 1013 5647 736 744 1094 1094 0.053415157259905754 AKANAEKL 8 Unmodified _AKANAEKL_ 0 0 0 ENST00000478998.5_1_3:108124174-108178278:-|nuORF;ENSG00000144821|ENST00000693548|MYH15 ENST00000478998.5_1_3:108124174-108178278:-|nuORF ENST00000478998.5_1_3:108124174-108178278:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7489318847656 2 422.747985 843.481417 1.439 0.00060834 0.40602 0.00017164 1.845 0.00077999 422.74815769888323 36.05 0.33975 31.857 31.678 32.018 -4.1928 37 20 2 0 0 0 0.18875 1 20959 20959 74.423 15.744 1 11739000 1014 5647 736 744 1095 1095 0.053415157259905754 AKAPRPAK 8 Unmodified _AKAPRPAK_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7674865722656 2 419.766512 837.518471 0.28122 0.00011805 0.34947 0.0001467 0.63069 0.00026474 419.7668048174167 39.795 0.29486 39.8 39.709 40.004 0.0050583 24 13 2 0 0 0 0.80311 1 21191 21191 4.756 0 1 1330600 1015 2360 737 745 1096 1096 0.0932123206240476 AKCKAKSL 8 Unmodified _AKCKAKSL_ 0 0 0 ENSG00000183114|ENST00000332947|FAM43B ENSG00000183114|ENST00000332947|FAM43B ENSG00000183114|ENST00000332947|FAM43B MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7560424804688 2 424.754756 847.494958 1.5054 0.00063944 1.4404 0.00061183 2.9459 0.0012513 424.7552140273587 33.693 0.49659 29.708 29.469 29.965 -3.9853 66 27 3 0 0 0 0.80232 1 19487 19487 5.2307 2.6532 1 28820000 1016 9119 738 746 1097 1097 0.06511050233575588 AKDAAQCCETF 11 Unmodified _AKDAAQCCETF_ 0 0 0 REV__ENSG00000163631|ENST00000295897|ALB REV__ENSG00000163631|ENST00000295897|ALB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1672058105469 3 396.167091 1185.47944 NaN NaN NaN NaN NaN NaN NaN 14.898 1 14.898 14.398 15.398 0 0 0 0 0.94307 1 7127 7127 0.08335 0 1 + + 1017 16842 739 747 1098 1098 -0.10587649136436994 AKDPTAVIF 9 Unmodified _AKDPTAVIF_ 0 0 0 ENST00000486968.1_1_6:80837277-80845596:+|nuORF;nc|ENSG00000083123|P21953-2|BCKDHB;ENSG00000083123|ENST00000320393|BCKDHB ENST00000486968.1_1_6:80837277-80845596:+|nuORF ENST00000486968.1_1_6:80837277-80845596:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 961.5379638671875 1 961.535309 960.528032 0.59275 0.00056995 0.21119 0.00020307 0.80394 0.00077302 961.5358200304478 73.351 0.39708 72.875 72.695 73.092 -0.47588 38 17 3 0 0 0 0.08691 1 40085 40085 36.127 8.4982 1 3546100 1018 1359 740 748 1099 1099 0.04618955557282334 AKEGVQLKILP 11 Unmodified _AKEGVQLKILP_ 0 0 0 ENST00000491090.5_1_20:17923836-17928232:-|nuORF ENST00000491090.5_1_20:17923836-17928232:-|nuORF ENST00000491090.5_1_20:17923836-17928232:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2508544921875 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 65.143 1 64.659 64.159 65.159 -0.48428 0 0 0 0.94181 1 35548 35548 1.2148 0.021489 1 1019 14276 741 749 1100 1100 0.14403109016689086 AKEPQPTELY 10 Unmodified _AKEPQPTELY_ 0 0 0 REV__ENSG00000186283|ENST00000367627|TOR3A REV__ENSG00000186283|ENST00000367627|TOR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.3021850585938 2 588.300778 1174.587 -0.4931 -0.00029009 -2.0298 -0.0011941 -2.5229 -0.0014842 588.3017514213292 41.066 0.27798 41.066 40.94 41.218 0 29 15 3 0 0 0 0.20962 1 22173 22173 32.786 1.5173 1 4333400 + 1020 23565 742 750 1101 1101 0.006693870609524311 AKEPQPTELY 10 Unmodified _AKEPQPTELY_ 0 0 0 REV__ENSG00000186283|ENST00000367627|TOR3A REV__ENSG00000186283|ENST00000367627|TOR3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.300778 1174.587 -0.4931 -0.00029009 -2.0298 -0.0011941 -2.5229 -0.0014842 588.3017514213292 41.066 0.27798 41.066 40.94 41.218 0 0 0 NaN 32.786 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4333400 + 1021 23565 742 750 0.006693870609524311 AKFGARTS 8 Unmodified _AKFGARTS_ 0 0 0 ENST00000307826.4_1_5:180220053-180229749:-|nuORF;ENST00000507384.1_2_5:180222720-180229749:-|nuORF ENST00000307826.4_1_5:180220053-180229749:-|nuORF ENST00000307826.4_1_5:180220053-180229749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2325134277344 2 419.232502 836.450451 -0.557 -0.00023351 0.83238 0.00034896 0.27538 0.00011545 419.2329112827234 17.496 0.075008 17.51 17.485 17.56 0.013865 22 17 2 0 0 0 0.58902 1 8707 8707 26.884 5.137 1 820200 1022 11644 743 751 1102 1102 0.02568362411761882 AKFGARTS 8 Unmodified _AKFGARTS_ 0 0 0 ENST00000307826.4_1_5:180220053-180229749:-|nuORF;ENST00000507384.1_2_5:180222720-180229749:-|nuORF ENST00000307826.4_1_5:180220053-180229749:-|nuORF ENST00000307826.4_1_5:180220053-180229749:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2338256835938 2 419.232502 836.450451 0.93126 0.00039041 0.99226 0.00041599 1.9235 0.0008064 419.23291469828337 18.095 0.21014 15.474 15.372 15.582 -2.6215 28 17 2 0 0 0 0.52622 1 9507 9507 32.305 10.559 1 4562300 1023 11644 743 751 1103 1103 0.02568362411761882 AKGAPGLLLFL 11 Unmodified _AKGAPGLLLFL_ 0 0 0 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3477172851562 2 550.347335 1098.68012 1.7266 0.00095025 -1.7855 -0.00098264 -0.058869 -3.2398E-05 550.3462892096859 100.27 0.13535 100.23 100.18 100.32 -0.036301 7 4 3 0 0 0 0.39949 1 55709 55709 21.537 1.1224 1 7460200 + 1024 17158 744 752 1104 1104 0.1347235630482828 AKGFEYTSIMI 11 Unmodified _AKGFEYTSIMI_ 0 0 0 REV__ENSG00000075303|ENST00000341119|SLC25A40 REV__ENSG00000075303|ENST00000341119|SLC25A40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3186645507812 2 630.320657 1258.62676 -0.32934 -0.00020759 -2.3029 -0.0014516 -2.6322 -0.0016592 630.318762728777 60.539 0.19906 60.049 59.99 60.189 -0.48932 15 9 2 0 0 0 0.44182 1 33002 33002 19.362 7.7216 1 3356100 + 1025 17567 745 753 1105 1105 0.007791907400360287 AKGGRTQF 8 Unmodified _AKGGRTQF_ 0 0 0 REV__ENST00000464909.2_2_2:61372297-61390194:+|nuORF REV__ENST00000464909.2_2_2:61372297-61390194:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.7389831542969 2 432.737951 863.46135 NaN NaN NaN NaN NaN NaN NaN 36.16 1 36.185 35.685 36.685 0.024967 0 0 0 0.97348 1 19148 19148 5.7604 0.52976 1 + 1026 27384 746 754 1106 1106 0.024157647860420184 AKGLRASIHL 10 Unmodified _AKGLRASIHL_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.8299560546875 2 533.330008 1064.64546 1.1629 0.00062021 0.68231 0.0003639 1.8452 0.00098411 533.3309590761025 97.995 0.13107 91.819 91.716 91.847 -6.1757 11 7 2 0 0 0 0.22667 1 64940 64940 15.847 1.2655 1 13466000 + 1027 21053 747 755 1107 1107 0.11572533216735792 AKGTPGKG 8 Unmodified _AKGTPGKG_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1;ENST00000515035.5_1_5:149748314-149754605:+|nuORF nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MSMS AL20221201_MKP_PDAC_01 4 358.205322265625 2 358.208495 714.402438 NaN NaN NaN NaN NaN NaN NaN 102.12 1 95.948 95.448 96.448 -6.1757 0 0 0 0.96606 1 68539 68539 7.2892 4.4 1 1028 1041 748 756 1108 1108 0.033812884917210795 AKHYLKSCY 9 Unmodified _AKHYLKSCY_ 0 0 0 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7825927734375 2 556.781502 1111.54845 1.1029 0.00061407 0.64957 0.00036167 1.7525 0.00097574 556.7820704818505 85.76 0.67334 79.585 79.462 80.136 -6.1757 63 37 2 0 0 0 0.25681 1 56526 56526 19.257 1.122 1 21489000 1029 10136 749 757 1109 1109 -0.002861970545609438 AKICKGEYAL 10 Unmodified _AKICKGEYAL_ 0 0 0 REV__nc|ENSG00000134363|P19883-2|FST REV__nc|ENSG00000134363|P19883-2|FST MSMS AL20221201_MKP_PDAC_01 4 365.8676452636719 3 365.867082 1094.57942 NaN NaN NaN NaN NaN NaN NaN 13.693 1 11.19 10.69 11.69 -2.5029 0 0 0 0.99091 1 6938 6938 0.69767 0 1 + 1030 19979 750 758 1110 1110 0.03590956259677114 AKIDGEVYVF 10 Unmodified _AKIDGEVYVF_ 0 0 0 REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.80126953125 2 570.800414 1139.58628 0.5958 0.00034008 0.45645 0.00026054 1.0523 0.00060063 570.8007381297747 53.162 0.2879 53.162 53.039 53.327 0 34 12 3 0 0 0 0.14923 1 29434 29434 39.95 15.929 1 9558800 + 1031 26955 751 759 1111 1111 0.022065924119033298 AKIKKPYKKR 10 Unmodified _AKIKKPYKKR_ 0 0 0 ENSG00000180104|ENST00000512944|EXOC3 ENSG00000180104|ENST00000512944|EXOC3 ENSG00000180104|ENST00000512944|EXOC3 MSMS AL20221201_MKP_PDAC_01 4 630.4173583984375 2 630.419157 1258.82376 NaN NaN NaN NaN NaN NaN NaN 104.15 1 97.975 97.475 98.475 -6.1757 0 0 0 1.0024 1 69769 69769 0.40072 0.050084 1 1032 8883 752 760 1112 1112 0.2047020313577832 AKKKTKKRD 9 Unmodified _AKKKTKKRD_ 0 0 0 nc|ENSG00000125351|Q9BZI7-2|UPF3B;ENSG00000125351|ENST00000276201|UPF3B nc|ENSG00000125351|Q9BZI7-2|UPF3B nc|ENSG00000125351|Q9BZI7-2|UPF3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2415771484375 3 368.240018 1101.69823 NaN NaN NaN NaN NaN NaN NaN 98.462 1 98.462 97.962 98.962 0 0 0 0 0.86054 1 54380 54380 0.20686 0.047535 1 1033 3839 753 761 1113 1113 0.15144491279579597 AKKMKIRSK 9 Unmodified _AKKMKIRSK_ 0 0 0 REV__nc|ENSG00000156983|P55201-4|BRPF1 REV__nc|ENSG00000156983|P55201-4|BRPF1 MSMS AL20221201_MKP_PDAC_01 4 545.352783203125 2 545.349886 1088.68522 NaN NaN NaN NaN NaN NaN NaN 107.93 1 101.75 101.25 102.25 -6.1757 0 0 0 0.86031 1 72157 72157 0.52476 0 1 + 1034 21357 754 762 1114 1114 0.1444233689583143 AKLIERIWT 9 Unmodified _AKLIERIWT_ 0 0 0 REV__ENST00000485209.5_1_1:184027321-184041978:+|nuORF REV__ENST00000485209.5_1_1:184027321-184041978:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3010864257812 2 565.340041 1128.66553 0.66498 0.00037594 1.0388 0.00058728 1.7038 0.00096322 565.3407197524768 67.926 0.29343 67.951 67.794 68.088 0.025146 34 13 3 0 0 0 0.21439 1 37222 37222 8.7454 0 1 4508400 + 1035 27775 755 763 1115 1115 0.1063428415668568 AKLMLYIFVVI 11 Unmodified _AKLMLYIFVVI_ 0 0 0 nc|ENSG00000132259|Q8IV77-2|CNGA4;ENSG00000132259|ENST00000379936|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.2705078125 3 437.269927 1308.78795 -0.5142 -0.00022484 0.30879 0.00013502 -0.20541 -8.9819E-05 437.2700302181201 19.496 0.24611 19.524 19.424 19.67 0.028357 71 26 4 0 0 0 0.73114 2 9799 9799;9902 1.3296 0 1 3265900 1036 4382 756 764 1116;1117 1116 0.14590984843903243 AKLMLYIFVVI 11 Unmodified _AKLMLYIFVVI_ 0 0 0 nc|ENSG00000132259|Q8IV77-2|CNGA4;ENSG00000132259|ENST00000379936|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 nc|ENSG00000132259|Q8IV77-2|CNGA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.2708129882812 3 437.269927 1308.78795 0.92254 0.0004034 0.33091 0.0001447 1.2534 0.00054809 437.2700709398488 22.152 0.51669 19.417 19.14 19.657 -2.7348 97 28 5 0 0 0 0.71728 1 11786 11786 2.6312 0 1 55966000 1037 4382 756 764 1118 1118 0.14590984843903243 AKLRLWGG 8 Unmodified _AKLRLWGG_ 0 0 0 REV__ENST00000552683.5_1_16:707859-713132:+|nuORF REV__ENST00000552683.5_1_16:707859-713132:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.7758483886719 2 450.774337 899.534121 NaN NaN NaN NaN NaN NaN NaN 30.461 1 26.965 26.465 27.465 -3.497 0 0 0 0.53879 1 17196 17196 38.151 2.107 1 + 1038 28660 757 765 1119 1119 0.08033518579475185 AKLYKSNNKL 10 Unmodified _AKLYKSNNKL_ 0 0 0 REV__nc|ENSG00000164323|Q9P2B7-2|CFAP97 REV__nc|ENSG00000164323|Q9P2B7-2|CFAP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5675659179688 3 393.567912 1177.68191 0.39794 0.00015661 -1.4295 -0.00056262 -1.0316 -0.000406 393.5673566983836 14.978 0.18894 12.45 12.369 12.558 -2.5273 59 31 2 0 0 0 0.69385 1 7613 7613 3.5871 0.74377 1 5862200 + 1039 21905 758 766 1120 1120 0.10017365322801197 AKNSNWKFF 9 Unmodified _AKNSNWKFF_ 0 0 0 REV__ENST00000349824.8_1_7:50470526-50470820:+|nuORF REV__ENST00000349824.8_1_7:50470526-50470820:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.293701171875 2 571.293091 1140.57163 0.29174 0.00016667 0.98651 0.00056359 1.2783 0.00073026 571.2934977940438 78.246 0.45291 78.298 78.037 78.49 0.052452 44 18 3 0 0 0 0.34999 1 43286 43286 14.838 2.3067 1 9595000 + 1040 25780 759 767 1121 1121 0.0069656505440889305 AKPKRKPGMRP 11 Unmodified _AKPKRKPGMRP_ 0 0 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5926818847656 3 422.592286 1264.75503 0.69307 0.00029289 0.48553 0.00020518 1.1786 0.00049807 422.5924613223956 46.275 0.39256 46.275 46.108 46.501 0 25 18 2 0 0 0 0.74046 1 25288 25288 0.45452 0.29519 1 1577500 1041 440 760 768 1122 1122 0.13324215564421138 AKPKRKPGMRP 11 Unmodified _AKPKRKPGMRP_ 0 0 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9269409179688 3 422.592286 1264.75503 0.93265 0.00039413 0.86335 0.00036484 1.796 0.00075898 422.5925752802834 82.082 1.0204 75.906 75.195 76.215 -6.1757 106 56 3 0 0 0 0.73237 1 54106 54106 1.2148 0.10508 1 22005000 1042 440 760 768 1123 1123 0.13324215564421138 AKQGLGTY 8 Unmodified _AKQGLGTY_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.4464721679688 1 837.446494 836.439217 0.67999 0.00056945 -1.0818 -0.00090598 -0.40185 -0.00033652 837.4458197471984 43.267 0.42172 38.502 38.318 38.74 -4.7648 36 29 2 0 0 0 0.46494 1 26169 26169 38.151 6.0342 1 16542000 + 1043 17207 761 769 1124 1124 0.014455403176043546 AKQIMEETY 9 Unmodified _AKQIMEETY_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.8034057617188 2 556.768257 1111.52196 0.75441 0.00042003 -3.9112 -0.0021777 -3.1568 -0.0017576 556.7669127594411 65.144 0.082275 58.968 58.917 59 -6.1757 6 4 2 0 0 0 0.18521 1 42266 42266 16.942 5.302 1 7478000 1044 5997 762 770 1125 1125 -0.02933930736548973 AKQLEASII 9 Unmodified _AKQLEASII_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7901611328125 2 486.78985 971.565146 0.82713 0.00040264 0.1492 7.2631E-05 0.97633 0.00047527 486.7902481923925 54.497 0.36626 48.632 48.469 48.835 -5.8653 37 22 2 0 0 0 0.039985 1 34664 34664 49.933 2.3386 1 41676000 + 1045 17538 763 771 1126 1126 0.07822627103041668 AKREAEAPV 9 Unmodified _AKREAEAPV_ 0 0 0 ENST00000536780.6_1_15:89922461-89931107:+|nuORF ENST00000536780.6_1_15:89922461-89931107:+|nuORF ENST00000536780.6_1_15:89922461-89931107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2705383300781 2 485.769448 969.524344 1.0205 0.00049574 -2.0564 -0.00099894 -1.0359 -0.00050319 485.76847354003394 94.971 0.29847 88.796 88.592 88.891 -6.1757 23 16 2 0 0 0 0.25681 1 62875 62875 19.257 4.0085 1 7277800 1046 14982 764 772 1127 1127 0.038362857834158604 AKRKVLITAQD 11 Unmodified _AKRKVLITAQD_ 0 0 0 REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 621.8818359375 2 621.880062 1241.74557 NaN NaN NaN NaN NaN NaN NaN 106.36 1 100.18 99.68 100.68 -6.1757 0 0 0 0.94184 1 71196 71196 1.1933 0.12188 1 + 1047 29045 765 773 1128 1128 0.13436725759879664 AKRLATRME 9 Unmodified _AKRLATRME_ 0 0 0 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2066650390625 3 359.206209 1074.5968 -0.01929 -6.9289E-06 0.19691 7.0732E-05 0.17762 6.3803E-05 359.2065728103983 17.712 0.12473 17.717 17.665 17.79 0.0050545 19 8 3 0 0 0 0.47846 1 8945 8945 5.7834 2.4638 1 1209100 + 1048 16768 766 774 1129 1129 0.06248296585363278 AKRLATRME 9 Unmodified _AKRLATRME_ 0 0 0 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2080078125 3 359.206209 1074.5968 1.5441 0.00055467 2.0671 0.00074251 3.6112 0.0012972 359.20713606519473 18.974 0.19729 16.352 16.242 16.439 -2.6215 16 12 2 0 0 0 0.52067 1 10029 10029 6.6304 0.89852 1 1464900 + 1049 16768 766 774 1130 1130 0.06248296585363278 AKRLATRME 9 Unmodified _AKRLATRME_ 0 0 0 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 REV__chr1:223544200-223544772|61|21.21|0.52|5.36|-|2|None,CAPN8|1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 359.206209 1074.5968 -0.01929 -6.9289E-06 0.19691 7.0732E-05 0.17762 6.3803E-05 359.2065728103983 17.712 0.12473 17.717 17.665 17.79 0.0050545 0 0 NaN 5.7834 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1209100 + 1050 16768 766 774 0.06248296585363278 AKRPAQAPIQ 10 Unmodified _AKRPAQAPIQ_ 0 0 0 nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000285975|A6NNJ1|FAM90A9;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285937|A6NJQ4|FAM90A8;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000254229|A8MX19|FAM90A12;nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;nc|ENSG00000285975|A6NKC0|FAM90A7;ENSG00000229924|ENST00000512047|FAM90A26 nc|ENSG00000205879|Q658T7|FAM90A2P nc|ENSG00000205879|Q658T7|FAM90A2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.5494995117188 3 360.548852 1078.62473 NaN NaN NaN NaN NaN NaN NaN 16.277 1 16.278 15.778 16.778 0.0010548 0 0 0 0.99008 1 8020 8020 1.7423 0.54893 1 1051 10610 767 775 1131 1131 0.0885594283708997 AKVAASRK 8 Unmodified _AKVAASRK_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.7642211914062 2 415.763969 829.513385 -0.15883 -6.6037E-05 1.7674 0.00073482 1.6086 0.00066879 415.76468988307147 29.977 0.19671 30.007 29.894 30.091 0.030106 10 7 2 0 0 0 0.79887 1 15672 15672 7.2892 0.56607 1 1624800 1052 8400 768 776 1132 1132 0.09180928199793925 AKVEEEPEE 9 Unmodified _AKVEEEPEE_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2468872070312 2 530.245669 1058.47678 NaN NaN NaN NaN NaN NaN NaN 3.3336 1 3.3213 2.8213 3.8213 -0.012334 0 0 0 0.85359 1 1693 1693 0.52476 0 1 1053 7515 769 777 1133 1133 -0.05011457998102742 AKVFINDYF 9 Unmodified _AKVFINDYF_ 0 0 0 ENST00000495550.5_1_1:197704780-197743705:-|nuORF ENST00000495550.5_1_1:197704780-197743705:-|nuORF ENST00000495550.5_1_1:197704780-197743705:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7914428710938 2 558.78985 1115.56515 1.3155 0.00073511 1.2263 0.00068523 2.5418 0.0014203 558.7902633342768 66.168 0.60265 66.177 65.835 66.438 0.0095596 79 30 3 0 0 0 0.43515 1 36281 36281 15.847 15.847 1 20917000 1054 14355 770 778 1134 1134 0.011986271030309581 AKVLFILFRV 10 Unmodified _AKVLFILFRV_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3955688476562 2 603.392077 1204.7696 NaN NaN NaN NaN NaN NaN NaN 89.496 1 88.995 88.495 89.495 -0.50171 0 0 0 1.0024 1 48931 48931 0.40072 0 1 1055 7661 771 779 1135 1135 0.17540610984224259 AKVLMLMV 8 Unmodified _AKVLMLMV_ 0 0 0 REV__ENSG00000189045|ENST00000601380|ANKDD1B REV__ENSG00000189045|ENST00000601380|ANKDD1B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 452.7488098144531 2 452.77156 903.528566 1.4428 0.00065324 -2.2084 -0.00099992 -0.76567 -0.00034668 452.77098640129424 35.832 0.34328 31.639 31.493 31.837 -4.1928 37 21 2 0 0 0 8.7369 1 20840 20840 5.7604 1.0044 1 8464500 + 1056 23754 772 780 1136 1136 0.07294335681137909 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.76123046875 2 425.760895 849.507237 0.49152 0.00020927 0.15281 6.5062E-05 0.64434 0.00027433 425.7608812526788 57.326 0.31573 56.837 56.668 56.984 -0.48974 33 14 3 0 0 0 0.01018 1 31138 31138 79.935 23.886 1 7069500 1057 7383;2506 773 781 1137 1137 0.0764640996825392 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.7610168457031 2 425.760895 849.507237 0.73309 0.00031212 -0.815 -0.000347 -0.081911 -3.4875E-05 425.7605394963983 56.954 0.19521 56.886 56.76 56.955 -0.068737 15 9 2 0 0 0 0.01018 1 30987 30987 79.935 23.886 1 3400300 1058 7383;2506 773 781 1138 1138 0.0764640996825392 ALAAALAHI 9 Unmodified _ALAAALAHI_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.7624206542969 2 425.760895 849.507237 1.9254 0.00081976 -0.0093776 -3.9926E-06 1.916 0.00081576 425.76094745881704 62.544 0.48162 56.369 56.104 56.586 -6.1757 44 24 3 0 0 0 0.01018 2 40264 40264;40395 79.935 12.522 1 39283000 1059 7383;2506 773 781 1139;1140 1139 0.0764640996825392 ALAAILTRL 9 Unmodified _ALAAILTRL_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.3106994628906 2 471.310752 940.606951 0.10177 4.7963E-05 -0.26798 -0.0001263 -0.16622 -7.8339E-05 471.31042529134345 75.552 0.41011 75.599 75.454 75.864 0.047943 47 18 3 0 0 0 0.032796 1 41735 41735 53.833 6.0841 1 11003000 1060 6463 774 782 1141 1141 0.13427227582224077 ALAALETPG 9 Unmodified _ALAALETPG_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7354736328125 2 421.734543 841.454533 0.52722 0.00022235 2.4955 0.0010524 3.0227 0.0012748 421.7356727337294 30.545 0.1864 30.442 30.337 30.523 -0.10269 10 6 2 0 0 0 0.39863 1 15871 15871 12.532 0 1 846050 1061 7064 775 783 1142 1142 0.027464071147960567 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7606506347656 2 450.761092 899.507631 -0.30529 -0.00013761 -0.65503 -0.00029526 -0.96032 -0.00043287 450.7607560583039 28.629 0.45025 28.629 28.453 28.903 0 77 22 5 0 0 0 0.0082485 3 14736 14716;14736;14834 96.285 42.709 1 538160000 1062 1799 776 784 1143;1144;1145 1144 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 900.5162353515625 1 900.514908 899.507631 -0.65566 -0.00059043 -1.016 -0.0009149 -1.6716 -0.0015053 900.5140687460103 28.611 0.14457 28.611 28.538 28.683 0 9 6 2 0 0 0 0.044296 1 14794 14794 47.594 13.193 1 1256500 1063 1799 776 784 1146 1146 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7613830566406 2 450.761092 899.507631 0.49981 0.00022529 0.50979 0.00022979 1.0096 0.00045509 450.7613915431036 28.597 0.2263 28.535 28.418 28.644 -0.062159 14 8 2 0 0 0 0.018301 1 14771 14771 65.235 19.214 1 5729900 1064 1799 776 784 1147 1147 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7613220214844 2 450.761092 899.507631 0.56918 0.00025657 0.58525 0.00026381 1.1544 0.00052037 450.7613490100467 28.45 0.26662 28.48 28.354 28.621 0.029564 30 10 4 0 0 0 0.011968 1 14792 14792 74.929 26.583 1 16338000 1065 1799 776 784 1148 1148 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7617797851562 2 450.761092 899.507631 0.68497 0.00030876 -0.54636 -0.00024628 0.13861 6.248E-05 450.7607640819012 33.019 0.67513 29.162 28.872 29.547 -3.8562 147 41 5 0 0 0 0.0082661 4 18734 18734;18868;18995;19125 92.491 26.583 1 2550400000 1066 1799 776 784 1149;1150;1151;1152 1149 0.053857848974644185 ALADGVQKV 9 Unmodified _ALADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 900.5176391601562 1 900.514908 899.507631 0.36631 0.00032987 -0.64436 -0.00058025 -0.27805 -0.00025039 900.5145424483668 33.012 0.38194 29.156 28.989 29.371 -3.8562 43 24 2 0 0 0 1.9533E-28 3 18969 18844;18969;19033 206.75 110.46 1 44838000 1067 1799 776 784 1153;1154;1155 1154 0.053857848974644185 ALADKELLPSV 11 Unmodified _ALADKELLPSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3331298828125 2 578.334621 1154.65469 0.40378 0.00023352 0.46456 0.00026867 0.86834 0.00050219 578.3348626017342 58.287 0.33851 58.287 58.103 58.441 0 35 12 4 0 0 0 0.073778 2 32410 32410;32509 45.74 23.082 1 3857300 1068 660 777 785 1156;1157 1156 0.08354836991748016 ALADKELLPSV 11 Unmodified _ALADKELLPSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MSMS AL20221201_MKP_PDAC_01 4 578.3358764648438 2 578.334621 1154.65469 NaN NaN NaN NaN NaN NaN NaN 64.93 1 58.754 58.254 59.254 -6.1757 0 0 0 0.10726 1 42109 42109 49.527 7.6876 1 1069 660 777 785 1158 1158 0.08354836991748016 ALADNLLRV 9 Unmodified _ALADNLLRV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7422485351562 2 492.795466 983.57638 0.67088 0.00033061 -1.3769 -0.00067851 -0.70598 -0.0003479 492.79492980228724 62.956 0.19646 62.47 62.326 62.522 -0.48617 13 9 2 0 0 0 0.17331 1 34354 34354 22.736 7.898 1 3490900 1070 494 778 786 1159 1159 0.08393449197183145 ALADRANNAQE 11 Unmodified _ALADRANNAQE_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7874755859375 2 586.786358 1171.55816 NaN NaN NaN NaN NaN NaN NaN 35.312 1 35.312 34.812 35.812 0 0 0 0 0.58065 1 18662 18662 21.537 1.0834 1 + 1071 23849 779 787 1160 1160 -0.020753375154981768 ALAEALKEV 9 Unmodified _ALAEALKEV_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2760314941406 2 472.276575 942.538597 0.19695 9.3013E-05 -0.70558 -0.00033323 -0.50864 -0.00024022 472.2763804371756 46.936 0.22355 46.936 46.858 47.081 0 15 10 2 0 0 0 0.014417 1 25683 25683 69.105 23.084 1 4238400 1072 5638 780 788 1161 1161 0.06502938211701803 ALAEEVEQV 9 Unmodified _ALAEEVEQV_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2536010742188 2 494.253297 986.492041 -0.23346 -0.00011539 0.21513 0.00010633 -0.01833 -9.0599E-06 494.2535072160939 44.58 0.38804 44.58 44.342 44.73 0 65 20 4 0 0 0 0.0083087 2 24198 24198;24308 97.075 9.7891 1 290320000 1073 4064 781 789 1162;1163 1162 -0.0017454641023277873 ALAEEVEQV 9 Unmodified _ALAEEVEQV_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.4989624023438 1 987.499317 986.492041 -0.36497 -0.0003604 -0.28047 -0.00027696 -0.64543 -0.00063736 987.4990142290545 44.587 0.22188 44.587 44.455 44.677 0 18 11 3 0 0 0 0.00856 1 24250 24250 100.37 11.418 1 14439000 1074 4064 781 789 1164 1164 -0.0017454641023277873 ALAEEVEQV 9 Unmodified _ALAEEVEQV_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2536315917969 2 494.253297 986.492041 0.75446 0.00037289 -0.40052 -0.00019796 0.35395 0.00017494 494.253255047844 52.377 0.49929 46.642 46.393 46.892 -5.7345 87 28 4 0 0 0 0.0083087 3 32930 32930;33053;33170 97.075 29.731 1 333290000 1075 4064 781 789 1165;1166;1167 1165 -0.0017454641023277873 ALAEEVEQV 9 Unmodified _ALAEEVEQV_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 987.5027465820312 1 987.499317 986.492041 0.71668 0.00070772 0.1131 0.00011169 0.82978 0.00081941 987.4994547013779 52.408 0.31601 46.673 46.484 46.8 -5.7345 29 17 2 0 0 0 0.0067112 2 33147 33028;33147 112.59 12.794 1 35184000 1076 4064 781 789 1168;1169 1169 -0.0017454641023277873 ALAEGCPRL 9 Carbamidomethyl (C) _ALAEGC(Carbamidomethyl (C))PRL_ ALAEGC(1)PRL ALAEGC(68)PRL 0 1 0 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.758056640625 2 493.758027 985.5015 0.24248 0.00011972 0.40004 0.00019752 0.64252 0.00031725 493.7578705156131 39.95 0.25189 35.42 35.26 35.512 -4.5294 29 18 2 0 0 0 0.015445 1 23744 23744 68.081 24.222 1 30001000 1077 2525 782 790 1170 1170 257 0.00816943394295322 ALAEIAKAEL 10 Unmodified _ALAEIAKAEL_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.8026123046875 2 514.802957 1027.59136 -0.14512 -7.4708E-05 -0.10753 -5.5358E-05 -0.25265 -0.00013007 514.802869807692 51.996 0.33316 51.996 51.842 52.175 0 36 14 3 0 0 0 0.025861 1 28726 28726 70.332 12.61 1 30902000 1078 3228 783 791 1171 1171 0.0786689627452688 ALAEIAKAEL 10 Unmodified _ALAEIAKAEL_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8017578125 2 514.802957 1027.59136 0.43883 0.00022591 -0.80798 -0.00041595 -0.36915 -0.00019004 514.8024117744022 52.479 0.27179 52.045 51.925 52.197 -0.43367 30 13 3 0 0 0 0.021614 1 28340 28340 74.2 16.478 1 7047200 1079 3228 783 791 1172 1172 0.0786689627452688 ALAEIAKAEL 10 Unmodified _ALAEIAKAEL_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8035278320312 2 514.802957 1027.59136 1.3849 0.00071298 -0.58819 -0.0003028 0.79676 0.00041018 514.802488211781 58.73 0.49665 52.656 52.371 52.868 -6.0745 68 27 3 0 0 0 0.043225 2 37569 37569;37693 61.602 15.902 1 58925000 1080 3228 783 791 1173;1174 1173 0.0786689627452688 ALAELENIEV 10 Unmodified _ALAELENIEV_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7945556640625 2 550.795329 1099.5761 0.2843 0.00015659 -0.099037 -5.4549E-05 0.18527 0.00010204 550.7951813165922 72.077 0.35635 72.077 71.883 72.24 0 51 16 4 0 0 0 0.035736 1 40078 40078 65.235 21.377 1 7250000 1081 8079 784 792 1175 1175 0.030299846866682856 ALAELENIEV 10 Unmodified _ALAELENIEV_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7957763671875 2 550.795329 1099.5761 0.6889 0.00037944 -1.0603 -0.00058399 -0.37137 -0.00020455 550.7945107622367 80.426 0.64232 74.25 74.037 74.679 -6.1757 51 35 2 0 0 0 0.035736 2 52808 52687;52808 65.235 28.729 1 41697000 1082 8079 784 792 1176;1177 1177 0.030299846866682856 ALAEMPTIY 9 Unmodified _ALAEMPTIY_ 0 0 0 REV__ENSG00000144028|ENST00000323853|SNRNP200 REV__ENSG00000144028|ENST00000323853|SNRNP200 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.27880859375 2 504.757161 1007.49977 -0.38475 -0.0001942 -0.35874 -0.00018108 -0.74349 -0.00037528 504.7572170940186 54.472 0.45492 54.006 53.746 54.201 -0.46664 57 23 4 0 0 0 0.20528 1 29469 29469 8.5933 8.5933 1 7440600 + 1083 20687 785 793 1178 1178 -0.0036811041430837577 ALAEPAELFL 10 Unmodified _ALAEPAELFL_ 0 0 0 REV__ENST00000306193.7_1_4:169931176-169931251:-|nuORF REV__ENST00000306193.7_1_4:169931176-169931251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.297607421875 2 537.297507 1072.58046 0.46293 0.00024873 0.95342 0.00051227 1.4164 0.000761 537.2989867733296 66.917 0.35798 66.917 66.795 67.153 0 31 16 3 0 0 0 0.14917 1 37340 37340 39.957 18.211 1 1818700 + 1084 25376 786 794 1179 1179 0.04707493900218651 ALAEPAELFL 10 Unmodified _ALAEPAELFL_ 0 0 0 REV__ENST00000306193.7_1_4:169931176-169931251:-|nuORF REV__ENST00000306193.7_1_4:169931176-169931251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.29833984375 2 537.297507 1072.58046 0.26217 0.00014087 -1.3572 -0.00072923 -1.0951 -0.00058837 537.2979876517137 85.781 0.33282 85.781 85.581 85.913 0 39 13 4 0 0 0 0.62068 1 47506 47506 10.074 0.6908 1 995390 + 1085 25376 786 794 1180 1180 0.04707493900218651 ALAERLDIV 9 Unmodified _ALAERLDIV_ 0 0 0 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2953491210938 2 500.295299 998.576045 0.93954 0.00047005 -0.50129 -0.00025079 0.43825 0.00021925 500.2950365841346 54.679 0.34709 54.679 54.505 54.852 0 39 14 4 0 0 0 0.029718 2 30418 30318;30418 55.503 18.63 1 15966000 1086 9731 787 795 1181;1182 1182 0.07670029477321805 ALAERLDIV 9 Unmodified _ALAERLDIV_ 0 0 0 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2960815429688 2 500.295299 998.576045 0.069452 3.4746E-05 0.2966 0.00014839 0.36605 0.00018313 500.29555711202636 55.126 0.28741 54.648 54.509 54.796 -0.47798 23 13 3 0 0 0 0.10247 1 29912 29912 32.786 2.9451 1 1682100 1087 9731 787 795 1183 1183 0.07670029477321805 ALAERLDIV 9 Unmodified _ALAERLDIV_ 0 0 0 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2953796386719 2 500.295299 998.576045 1.1859 0.0005933 -0.11844 -5.9257E-05 1.0675 0.00053405 500.2954055882055 61.328 0.27935 55.18 54.996 55.275 -6.1478 23 13 2 0 0 0 0.012228 1 39483 39483 74.2 21.931 1 27988000 1088 9731 787 795 1184 1184 0.07670029477321805 ALAESFKDE 9 Unmodified _ALAESFKDE_ 0 0 0 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7457885742188 2 505.245472 1008.47639 0.070308 3.5523E-05 -2.17 -0.0010964 -2.0996 -0.0010608 505.24491656712144 44.588 0.25479 44.588 44.437 44.691 0 24 13 3 0 0 0 0.05447 1 24233 24233 43.858 7.7313 1 23465000 1089 5693 788 796 1185 1185 -0.027508329272791343 ALAEVFHQL 9 Unmodified _ALAEVFHQL_ 0 0 0 ENST00000605862.4_1_7:128214806-128231910:+|nuORF;ENST00000479267.2_3_7:128218036-128231910:+|nuORF ENST00000605862.4_1_7:128214806-128231910:+|nuORF ENST00000605862.4_1_7:128214806-128231910:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.281494140625 2 514.282192 1026.54983 0.6258 0.00032184 -0.78023 -0.00040126 -0.15443 -7.9422E-05 514.2815183300664 62.182 0.25966 61.694 61.55 61.809 -0.48764 27 11 3 0 0 0 0.03568 1 33857 33857 52.268 18.166 1 3281900 1090 14034 789 797 1186 1186 0.03761760305860662 ALAGVSFEI 9 Unmodified _ALAGVSFEI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron;ENST00000574894.1_1_16:16367711-16371421:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4942016601562 1 906.49311 905.485833 0.44619 0.00040447 1.181 0.0010706 1.6272 0.0014751 906.4942861866097 80.213 0.62238 79.724 79.507 80.129 -0.48932 49 24 3 0 0 0 0.027803 1 43957 43957 56.541 2.9657 1 3186400 1091 2113 790 798 1187 1187 0.029309801489034726 ALAGVSFEI 9 Unmodified _ALAGVSFEI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron;ENST00000574894.1_1_16:16367711-16371421:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.4915771484375 1 906.49311 905.485833 0.80246 0.00072742 0.010744 9.7395E-06 0.8132 0.00073716 906.492624795542 87.429 0.45967 81.253 81.017 81.476 -6.1757 64 24 3 0 0 0 0.0094915 3 57801 57550;57677;57801 81.864 22.128 1 63243000 1092 2113 790 798 1188;1189;1190 1190 0.029309801489034726 ALAGVSFEI 9 Unmodified _ALAGVSFEI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron;ENST00000574894.1_1_16:16367711-16371421:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7503967285156 2 453.750193 905.485833 1.098 0.0004982 -0.09552 -4.3342E-05 1.0024 0.00045486 453.7501881723492 87.448 0.45879 81.272 81.036 81.495 -6.1757 56 24 3 0 0 0 0.095049 1 57555 57555 34.187 14.748 1 44187000 1093 2113 790 798 1191 1191 0.029309801489034726 ALAGVSFEI 9 Unmodified _ALAGVSFEI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron;ENST00000574894.1_1_16:16367711-16371421:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 906.49311 905.485833 0.055338 5.0164E-05 1.5819 0.001434 1.6372 0.0014841 906.4945640242745 79.739 0.34117 79.739 79.546 79.887 0 0.0074704 0.00030951 NaN 56.541 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 461970 1094 2113 790 798 0.029309801489034726 ALAHLTGP 8 Unmodified _ALAHLTGP_ 0 0 0 REV__ENST00000554997.1_1_14:64676435-64676651:+|nuORF REV__ENST00000554997.1_1_14:64676435-64676651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2239990234375 2 390.224146 778.433738 -0.41472 -0.00016183 -0.37916 -0.00014796 -0.79388 -0.00030979 390.2239689348682 48.866 0.2736 48.866 48.695 48.969 0 15 12 2 0 0 0 0.72953 1 26809 26809 14.582 1.0738 1 2964200 + 1095 28763 791 799 1192 1192 0.03565861525794389 ALAHLTGP 8 Unmodified _ALAHLTGP_ 0 0 0 REV__ENST00000554997.1_1_14:64676435-64676651:+|nuORF REV__ENST00000554997.1_1_14:64676435-64676651:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 390.224146 778.433738 -0.41472 -0.00016183 -0.37916 -0.00014796 -0.79388 -0.00030979 390.2239689348682 48.866 0.2736 48.866 48.695 48.969 0 0 0 NaN 14.582 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2964200 + 1096 28763 791 799 0.03565861525794389 ALAKLVEAI 9 Unmodified _ALAKLVEAI_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENST00000453064.1_1_7:76744718-76745129:-|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7994384765625 2 464.29731 926.580068 0.17758 8.2452E-05 0.78903 0.00036634 0.96661 0.00044879 464.29774451469336 59.224 0.27267 58.734 58.604 58.876 -0.49079 26 12 3 0 0 0 0.1773 1 32191 32191 25.399 4.9457 1 3249900 1097 5914 792 800 1193 1193 0.1138411897103424 ALALIYNEAL 10 Unmodified _ALALIYNEAL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.811279296875 2 545.810782 1089.60701 0.58088 0.00031705 1.3618 0.00074326 1.9426 0.0010603 545.811377423129 81.423 0.46632 80.931 80.7 81.166 -0.49247 82 20 5 0 0 0 0.36296 1 44528 44528 36.044 18.931 1 15161000 1098 10028 793 801 1194 1194 0.0657918279155183 ALALIYNEAL 10 Unmodified _ALALIYNEAL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8112182617188 2 545.810782 1089.60701 0.71342 0.00038939 0.948 0.00051743 1.6614 0.00090682 545.8114251951936 80.845 0.30648 80.902 80.733 81.039 0.057587 20 11 2 0 0 0 0.28276 1 44683 44683 34.102 15.967 1 3825200 1099 10028 793 801 1195 1195 0.0657918279155183 ALALIYNEAL 10 Unmodified _ALALIYNEAL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8120727539062 2 545.810782 1089.60701 1.0763 0.00058746 1.2047 0.00065756 2.281 0.001245 545.8114402235848 89.498 0.85663 83.323 82.882 83.739 -6.1757 122 47 3 0 0 0 0.20195 3 58945 58945;59068;59195 48.346 22.078 1 53410000 1100 10028 793 801 1196;1197;1198 1196 0.0657918279155183 ALALWIPSL 9 Unmodified _ALALWIPSL_ 0 0 0 nc|ENSG00000157992|Q53RY4-2|KRTCAP3;ENSG00000157992|ENST00000288873|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 983.5968627929688 1 983.59243 982.585153 0.72556 0.00071366 1.6351 0.0016083 2.3607 0.002322 983.5944098136216 101.67 0.081078 95.493 95.443 95.524 -6.1757 5 3 2 0 0 0 0.027803 1 68254 68254 56.541 18.39 1 6125700 1101 6555 794 802 1199 1199 0.09316422833660454 ALALWIPSL 9 Unmodified _ALALWIPSL_ 0 0 0 nc|ENSG00000157992|Q53RY4-2|KRTCAP3;ENSG00000157992|ENST00000288873|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 nc|ENSG00000157992|Q53RY4-2|KRTCAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3003540039062 2 492.299853 982.585153 0.70731 0.00034821 -0.55239 -0.00027194 0.15492 7.6267E-05 492.29951428477654 101.68 0.10162 95.508 95.443 95.545 -6.1757 9 4 3 0 0 0 0.027803 1 68261 68261 56.541 22.354 1 11947000 1102 6555 794 802 1200 1200 0.09316422833660454 ALALWLHTF 9 Unmodified _ALALWLHTF_ 0 0 0 REV__ENST00000470100.1_1_2:96076425-96076527:+|nuORF REV__ENST00000470100.1_1_2:96076425-96076527:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.762939453125 2 536.302927 1070.5913 -0.33819 -0.00018137 1.5439 0.00082798 1.2057 0.00064661 536.3028572792681 34.096 0.13311 33.904 33.865 33.998 -0.19131 7 4 2 0 0 0 0.19613 1 17821 17821 12.532 0 1 522680 + 1103 27474 795 803 1201 1201 0.058829410651469516 ALALWLHTF 9 Unmodified _ALALWLHTF_ 0 0 0 REV__ENST00000470100.1_1_2:96076425-96076527:+|nuORF REV__ENST00000470100.1_1_2:96076425-96076527:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.302927 1070.5913 0.12032 6.4526E-05 -0.094965 -5.093E-05 0.025351 1.3596E-05 536.3028469213357 33.824 0.21109 33.853 33.72 33.931 0.028934 -0.025711 -0.00046875 NaN 12.532 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 912210 + 1104 27474 795 803 0.058829410651469516 ALANGIEEV 9 Unmodified _ALANGIEEV_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 915.4769287109375 1 915.478188 914.470912 0.31143 0.00028511 0.15361 0.00014063 0.46504 0.00042574 915.4781078605464 46.589 0.39046 46.589 46.391 46.781 0 56 17 4 0 0 0 0.0044708 2 25437 25437;25538 118.89 14.096 1 23846000 1105 4058 796 804 1202;1203 1202 0.010254882809022092 ALANGIEEV 9 Unmodified _ALANGIEEV_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 915.4793090820312 1 915.478188 914.470912 0.85076 0.00077885 0.083451 7.6398E-05 0.93421 0.00085525 915.4782257520615 54.295 0.45643 48.43 48.211 48.668 -5.8653 70 27 3 0 0 0 0.0036082 3 34428 34288;34428;34576 123.45 27.166 1 69177000 1106 4058 796 804 1204;1205;1206 1205 0.010254882809022092 ALANQIPTV 9 Unmodified _ALANQIPTV_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7694702148438 2 463.768917 925.523281 1.2656 0.00058694 -0.57921 -0.00026862 0.68637 0.00031832 463.7689875996378 54.677 0.28115 54.677 54.484 54.765 0 21 11 2 0 0 0 0.013472 1 30336 30336 70.716 15.942 1 2144500 1107 1641 797 805 1207 1207 0.05754071414514783 ALANQIPTV 9 Unmodified _ALANQIPTV_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7683410644531 2 463.768917 925.523281 0.17881 8.2925E-05 0.35325 0.00016383 0.53206 0.00024675 463.76906329304495 55.214 0.41466 54.736 54.491 54.905 -0.47798 34 19 2 0 0 0 0.023164 1 29932 29932 60.39 5.616 1 2609300 1108 1641 797 805 1208 1208 0.05754071414514783 ALANQIPTV 9 Unmodified _ALANQIPTV_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.76953125 2 463.768917 925.523281 2.2073 0.0010237 -0.72386 -0.0003357 1.4835 0.00068799 463.76857840081766 62.734 0.43699 56.558 56.322 56.759 -6.1757 37 21 2 0 0 0 0.013472 1 40451 40451 70.716 6.4792 1 18685000 1109 1641 797 805 1209 1209 0.05754071414514783 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4727783203125 1 810.47198 809.464704 0.23425 0.00018986 0.57199 0.00046358 0.80624 0.00065344 810.4726164884588 53.152 0.2417 53.152 53.039 53.281 0 15 10 2 0 0 0 0.023164 1 29451 29451 60.39 6.814 1 1509100 1110 3332 798 806 1210 1210 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 810.4732055664062 1 810.47198 809.464704 0.080674 6.5384E-05 0.72371 0.00058655 0.80439 0.00065193 810.4726097066255 53.704 0.2739 53.253 53.109 53.383 -0.45173 24 13 2 0 0 0 0.038285 2 29020 29020;29123 50.855 6.448 1 3989400 1111 3332 798 806 1211;1212 1211 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.7395935058594 2 405.739628 809.464704 0.50119 0.00020335 -0.30844 -0.00012515 0.19275 7.8206E-05 405.7394677182998 53.721 0.27477 53.27 53.087 53.362 -0.45173 21 13 2 0 0 0 0.012158 1 29086 29086 74.396 17.855 1 2471800 1112 3332 798 806 1213 1213 0.05235014840036456 ALAPGLPTA 9 Unmodified _ALAPGLPTA_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000472389.1_1_1:212606336-212608058:+|nuORF;ENST00000479589.5_1_1:212606267-212617713:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20221201_MKP_PDAC_01 4 810.4688110351562 1 810.47198 809.464704 1.3628 0.0011045 -0.24972 -0.00020239 1.113 0.00090208 810.4711466071568 61.339 0.26206 55.191 55.055 55.317 -6.1478 17 12 2 0 0 0 0.0081063 1 39477 39477 93.883 23.168 1 16040000 1113 3332 798 806 1214 1214 0.05235014840036456 ALAPGVRAV 9 Unmodified _ALAPGVRAV_ 0 0 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2656555175781 2 427.266345 852.518136 -0.57688 -0.00024648 -0.35444 -0.00015144 -0.93132 -0.00039792 427.2661963543186 34.456 0.19498 34.456 34.365 34.56 0 17 9 2 0 0 0 0.06187 1 18162 18162 42.095 6.0504 1 2519200 1114 3767 799 807 1215 1215 0.08597812342554789 ALAPGVRAV 9 Unmodified _ALAPGVRAV_ 0 0 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2661743164062 2 427.266345 852.518136 -0.28419 -0.00012142 -0.32485 -0.0001388 -0.60903 -0.00026022 427.26623037127365 34.64 0.23288 34.449 34.331 34.564 -0.19132 24 10 3 0 0 0 0.042911 1 18086 18086 48.346 8.3885 1 8738000 1115 3767 799 807 1216 1216 0.08597812342554789 ALAPGVRAV 9 Unmodified _ALAPGVRAV_ 0 0 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2668151855469 2 427.266345 852.518136 1.0474 0.00044754 -0.11346 -4.8476E-05 0.93399 0.00039906 427.2662970881668 39.348 0.43684 34.897 34.704 35.141 -4.4509 62 26 3 0 0 0 0.038285 2 23442 23315;23442 50.855 6.448 1 52989000 1116 3767 799 807 1217;1218 1218 0.08597812342554789 ALAPLALGL 9 Unmodified _ALAPLALGL_ 0 0 0 REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF REV__ENST00000399878.7_2_4:25750095-25759376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 838.541015625 1 838.539666 837.53239 -0.55698 -0.00046705 2.6297 0.0022051 2.0727 0.0017381 838.541726170911 78.613 0.22604 78.128 78.012 78.238 -0.48596 14 8 2 0 0 0 0.085487 1 43046 43046 36.466 0 1 411310 + 1117 26588 800 808 1219 1219 0.10712464770847419 ALAPNVRL 8 Unmodified _ALAPNVRL_ 0 0 0 REV__ENST00000528713.5_1_11:500482-502162:-|nuORF REV__ENST00000528713.5_1_11:500482-502162:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.5720825195312 2 427.266345 852.518136 -0.28419 -0.00012142 -0.32485 -0.0001388 -0.60903 -0.00026022 427.26623037127365 34.64 0.23288 34.449 34.331 34.564 -0.19132 24 10 3 0 0 0 0.6895 1 18162 18162 18.135 6.4947 1 8738000 + 1118 17116 801 809 1220 1220 0.08597812342566158 ALAPNVRL 8 Unmodified _ALAPNVRL_ 0 0 0 REV__ENST00000528713.5_1_11:500482-502162:-|nuORF REV__ENST00000528713.5_1_11:500482-502162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2661743164062 2 427.266345 852.518136 NaN NaN NaN NaN NaN NaN NaN 34.371 1 34.399 33.899 34.899 0.027401 0 0 0 0.73801 1 18119 18119 26.341 3.1929 1 + 1119 17116 801 809 1221 1221 0.08597812342566158 ALAPRAHPP 9 Unmodified _ALAPRAHPP_ 0 0 0 ENST00000507961.1_1_4:110650834-110651032:-|nuORF ENST00000507961.1_1_4:110650834-110651032:-|nuORF ENST00000507961.1_1_4:110650834-110651032:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.269775390625 2 465.269419 928.524284 0.093916 4.3696E-05 0.10673 4.966E-05 0.20065 9.3356E-05 465.26937414602673 29.128 0.19505 29.158 29.079 29.274 0.030104 13 7 2 0 0 0 0.30562 1 15217 15217 16.942 0 1 2054200 1120 14550 802 810 1222 1222 0.05716330574080075 ALARKLPRC 9 Carbamidomethyl (C) _ALARKLPRC(Carbamidomethyl (C))_ ALARKLPRC(1) ALARKLPRC(42) 0 1 0 ENST00000528641.6_2_11:67250523-67250553:+|nuORF ENST00000528641.6_2_11:67250523-67250553:+|nuORF ENST00000528641.6_2_11:67250523-67250553:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 362.2190246582031 3 362.218449 1083.63352 NaN NaN NaN NaN NaN NaN NaN 17.941 1 15.355 14.855 15.855 -2.5866 0 0 0 0.10661 1 9422 9422 41.956 30.461 1 1121 14860 803 811 1223 1223 989 0.09504593201904754 ALASASFGDV 10 Unmodified _ALASASFGDV_ 0 0 0 ENST00000348579.6_1_16:67428515-67429028:-|nuORF ENST00000348579.6_1_16:67428515-67429028:-|nuORF ENST00000348579.6_1_16:67428515-67429028:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2345886230469 2 469.234907 936.455261 NaN NaN NaN NaN NaN NaN NaN 46.61 1 46.61 46.11 47.11 0 0 0 0 0.13561 1 25480 25480 48.346 2.3249 1 1122 12041 804 812 1224 1224 -0.015507982361327777 ALASHLIEA 9 Unmodified _ALASHLIEA_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7612609863281 2 462.761092 923.507631 0.42956 0.00019878 -0.33778 -0.00015631 0.091778 4.2471E-05 462.76086382967895 42.036 0.33516 42.036 41.864 42.199 0 54 17 4 0 0 0 0.00856 2 22668 22668;22780 100.37 42.9 1 104120000 1123 551 805 813 1225;1226 1225 0.04281784897466423 ALASHLIEA 9 Unmodified _ALASHLIEA_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7603759765625 2 462.761092 923.507631 -0.21062 -9.7466E-05 0.042763 1.9789E-05 -0.16785 -7.7677E-05 462.7610605359302 42.238 0.14198 41.931 41.838 41.98 -0.30682 9 6 2 0 0 0 0.008678 1 22435 22435 88.904 38.049 1 11231000 1124 551 805 813 1227 1227 0.04281784897466423 ALASHLIEA 9 Unmodified _ALASHLIEA_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7618103027344 2 462.761092 923.507631 1.552 0.00071822 0.040115 1.8564E-05 1.5922 0.00073679 462.7611238585887 47.595 0.56902 42.361 42.072 42.641 -5.2339 108 33 4 0 0 0 0.00856 3 29529 29396;29529;29663 100.37 49.516 1 223480000 1125 551 805 813 1228;1229;1230 1229 0.04281784897466423 ALASLYQW 8 Unmodified _ALASLYQW_ 0 0 0 ENST00000561734.5_1_16:835204-835471:-|nuORF ENST00000561734.5_1_16:835204-835471:-|nuORF ENST00000561734.5_1_16:835204-835471:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.250732421875 2 476.25036 950.486168 0.81729 0.00038923 -2.4732 -0.0011779 -1.6559 -0.00078863 476.2488559697105 78.779 0.52525 72.603 72.515 73.04 -6.1757 42 29 2 0 0 0 0.71616 1 51852 51852 15.768 2.2603 1 14135000 1126 15332 806 814 1231 1231 0.00894399868752771 ALASVATHI 9 Unmodified _ALASVATHI_ 0 0 0 ENSG00000125872|ENST00000378858|LRRN4 ENSG00000125872|ENST00000378858|LRRN4 ENSG00000125872|ENST00000378858|LRRN4 MSMS AL20221201_MKP_PDAC_01 4 441.7579650878906 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 33.027 1 29.171 28.671 29.671 -3.8562 0 0 0 0.23581 1 18904 18904 28.487 1.6032 1 1127 3904 807 815 1232 1232 0.05157802243047627 ALASVIMGL 9 Unmodified _ALASVIMGL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.50830078125 1 874.506651 873.499375 0.59425 0.00051967 0.25899 0.00022649 0.85323 0.00074616 874.5072021469671 99.599 0.12475 93.424 93.365 93.49 -6.1757 12 7 2 0 0 0 0.0088154 1 66379 66379 106.85 12.962 1 32335000 1128 2336 808 816 1233 1233 0.057565146565139 ALASVIMGL 9 Unmodified _ALASVIMGL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7576904296875 2 437.756964 873.499375 0.71245 0.00031188 0.88017 0.0003853 1.5926 0.00069718 437.75735865901953 99.611 0.12475 93.435 93.365 93.49 -6.1757 11 7 2 0 0 0 0.040472 1 66416 66416 49.669 9.2203 1 16831000 1129 2336 808 816 1234 1234 0.057565146565139 ALASWLGSF 9 Unmodified _ALASWLGSF_ 0 0 0 ENSG00000146006|ENST00000274711|LRRTM2 ENSG00000146006|ENST00000274711|LRRTM2 ENSG00000146006|ENST00000274711|LRRTM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2489318847656 2 476.25036 950.486168 0.81729 0.00038923 -2.4732 -0.0011779 -1.6559 -0.00078863 476.2488559697105 78.779 0.52525 72.603 72.515 73.04 -6.1757 42 29 2 0 0 0 0.12841 1 51723 51723 30.225 5.5509 1 14135000 1130 5746 809 817 1235 1235 0.00894399868752771 ALATLIHQV 9 Unmodified _ALATLIHQV_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.29248046875 2 483.292559 964.570566 0.17577 8.495E-05 -0.47933 -0.00023166 -0.30356 -0.00014671 483.29238458665526 54.443 0.32137 53.976 53.841 54.162 -0.46664 46 16 4 0 0 0 0.022193 2 29476 29476;29586 61.357 27.255 1 28771000 1131 2806 810 818 1236;1237 1236 0.08686350685502475 ALATLIHQV 9 Unmodified _ALATLIHQV_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.29296875 2 483.292559 964.570566 0.037556 1.8151E-05 -0.78443 -0.00037911 -0.74687 -0.00036096 483.2922382775478 54.119 0.25994 54.052 53.882 54.142 -0.066936 29 12 3 0 0 0 0.022193 1 29344 29344 61.357 15.337 1 11395000 1132 2806 810 818 1238 1238 0.08686350685502475 ALATLIHQV 9 Unmodified _ALATLIHQV_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2924194335938 2 483.292559 964.570566 1.0133 0.0004897 -0.41428 -0.00020022 0.59898 0.00028948 483.2924409901795 60.052 0.55046 53.938 53.665 54.216 -6.1147 66 29 3 0 0 0 0.010818 2 38709 38566;38709 78.149 23.376 1 120880000 1133 2806 810 818 1239;1240 1240 0.08686350685502475 ALAYAAIAVT 10 Unmodified _ALAYAAIAVT_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2796020507812 2 482.279118 962.543683 0.7391 0.00035645 0.46199 0.00022281 1.2011 0.00057926 482.27921459055517 64.44 0.28109 63.955 63.821 64.102 -0.48512 31 12 3 0 0 0 0.18088 1 35136 35136 36.044 4.7759 1 3916800 + + 1134 16872 811 819 1241 1241 0.060912420743079565 ALCEENMRGV 10 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))EENMRGV_ ALC(1)EENMRGV ALC(86)EENMRGV 0 1 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7691650390625 2 589.768265 1177.52198 1.2174 0.000718 0.20622 0.00012162 1.4237 0.00083963 589.7684015068629 35.946 0.42147 31.753 31.555 31.977 -4.1928 34 26 2 0 0 0 0.011118 1 20939 20939 85.642 47.466 1 5872100 1135 7651 812 820 1242 1242 742 -0.05968254008189433 ALCENKEDCP 10 Unmodified _ALCENKEDCP_ 0 0 0 ENSG00000188033|ENST00000311437|ZNF490 ENSG00000188033|ENST00000311437|ZNF490 ENSG00000188033|ENST00000311437|ZNF490 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.4906921386719 3 374.491575 1120.45289 -0.30648 -0.00011478 -0.77635 -0.00029074 -1.0828 -0.00040551 374.49117733557875 40.635 0.2109 40.635 40.529 40.739 0 28 11 4 0 0 0 0.69064 1 21855 21855 1.9064 0 1 7715600 1136 9618 813 821 1243 1243 -0.10251338027774182 ALCGCTVNV 9 2 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))GC(Carbamidomethyl (C))TVNV_ ALC(1)GC(1)TVNV ALC(47)GC(47)TVNV 0 2 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2301025390625 2 497.228245 992.441936 0.71021 0.00035314 -0.54496 -0.00027097 0.16525 8.2168E-05 497.2279084712003 46.956 0.25517 41.876 41.777 42.033 -5.0805 41 27 2 0 0 0 0.045537 2 29038 29038;29189 46.921 14.804 1 33095000 1137 4364 814 822 1244;1245 1244 442;443 -0.0545869561138943 ALCGQCVRTC 10 3 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))GQC(Carbamidomethyl (C))VRTC(Carbamidomethyl (C))_ ALC(1)GQC(1)VRTC(1) ALC(68)GQC(68)VRTC(68) 0 3 0 nc|ENSG00000184990|O15304-2|SIVA1;ENSG00000184990|ENST00000329967|SIVA1;ENST00000556431.1_1_14:105222603-105223098:+|nuORF nc|ENSG00000184990|O15304-2|SIVA1 nc|ENSG00000184990|O15304-2|SIVA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.76708984375 2 612.767742 1223.52093 0.13472 8.2553E-05 0.7249 0.0004442 0.85962 0.00052675 612.7681294941408 23.879 0.26264 21.052 20.915 21.178 -2.8273 26 15 2 0 0 0 0.03037 1 12920 12920 67.838 39.351 1 4663900 1138 9312 815 823 1246 1246 867;868;869 -0.08188791648740334 ALCGQRVP 8 Unmodified _ALCGQRVP_ 0 0 0 REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2271118164062 2 422.228905 842.443257 0.2522 0.00010649 -1.6318 -0.00068899 -1.3796 -0.0005825 422.2278765442281 52.933 0.36813 52.933 52.773 53.141 0 38 17 3 0 0 0 0.80722 1 29272 29272 2.3027 0 1 8166400 + 1139 26147 816 824 1247 1247 0.015733065396716484 ALCGQRVP 8 Unmodified _ALCGQRVP_ 0 0 0 REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2287902832031 2 422.228905 842.443257 0.42105 0.00017778 -1.1156 -0.00047103 -0.69454 -0.00029326 422.2279708243569 53.432 0.28448 52.98 52.803 53.087 -0.45173 31 13 3 0 0 0 0.80722 1 28875 28875 2.3027 0 1 3567700 + 1140 26147 816 824 1248 1248 0.015733065396716484 ALCHCLPVL 9 2 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))HC(Carbamidomethyl (C))LPVL_ ALC(1)HC(1)LPVL ALC(46)HC(46)LPVL 0 2 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MSMS AL20221201_MKP_PDAC_01 4 541.7781372070312 2 541.777905 1081.54126 NaN NaN NaN NaN NaN NaN NaN 64.089 1 57.913 57.413 58.413 -6.1757 0 0 0 0.09083 1 41494 41494 45.75 21.54 1 1141 7717 817 825 1249 1249 750;751 0.003747470733742375 ALCHCLPVL 9 2 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))HC(Carbamidomethyl (C))LPVL_ ALC(1)HC(1)LPVL ALC(46)HC(46)LPVL 0 2 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MSMS AL20221201_MKP_PDAC_01 4 541.7794189453125 2 541.777905 1081.54126 NaN NaN NaN NaN NaN NaN NaN 64.275 1 58.1 57.6 58.6 -6.1757 0 0 0 0.09083 1 41628 41628 45.75 27.615 1 1142 7717 817 825 1250 1250 750;751 0.003747470733742375 ALCHFCIDML 10 2 Carbamidomethyl (C) _ALC(Carbamidomethyl (C))HFC(Carbamidomethyl (C))IDML_ ALC(1)HFC(1)IDML ALC(54)HFC(54)IDML 0 2 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MSMS AL20221201_MKP_PDAC_01 4 640.2859497070312 2 640.285237 1278.55592 NaN NaN NaN NaN NaN NaN NaN 92.678 1 86.502 86.002 87.002 -6.1757 0 0 0 0.071591 1 61296 61296 53.576 35.429 1 1143 2318 818 826 1251 1251 228;229 -0.0722154884081192 ALCRSIKLQC 10 Unmodified _ALCRSIKLQC_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000481883.1_1_21:47976701-47976983:+|nuORF;ENST00000472364.1_1_21:47974114-47978399:+|nuORF nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8742065429688 3 378.875583 1133.60492 NaN NaN NaN NaN NaN NaN NaN 21.685 1 21.685 21.185 22.185 0 0 0 0 0.9997 1 10991 10991 0.69767 0 1 1144 6717 819 827 1252 1252 0.04346107510468755 ALCWRESV 8 Unmodified _ALCWRESV_ 0 0 0 REV__ENST00000428423.5_1_7:72474233-72476363:-|nuORF REV__ENST00000428423.5_1_7:72474233-72476363:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2408752441406 2 482.23947 962.464386 NaN NaN NaN NaN NaN NaN NaN 75.965 1 75.488 74.988 75.988 -0.47714 0 0 0 0.97444 1 41586 41586 2.8892 0 1 + 1145 26867 820 828 1253 1253 -0.018347281514593305 ALDAALNLY 9 Unmodified _ALDAALNLY_ 0 0 0 REV__ENSG00000112473|ENST00000374677|SLC39A7 REV__ENSG00000112473|ENST00000374677|SLC39A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.5152587890625 1 963.514573 962.507297 -0.35526 -0.0003423 1.8501 0.0017826 1.4948 0.0014403 963.5158808949706 56.074 0.13182 56.074 56.007 56.138 0 7 5 2 0 0 0 0.2143 1 31185 31185 21.747 1.293 1 790340 + 1146 18820 821 829 1254 1254 0.024543651776070874 ALDEGDIAL 9 Unmodified _ALDEGDIAL_ 0 0 0 ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 ENSG00000161057|ENST00000292644|PSMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 916.4599609375 1 916.462204 915.454927 0.082767 7.5853E-05 0.27007 0.00024751 0.35284 0.00032336 916.462436452918 58.641 0.21255 58.641 58.511 58.723 0 12 8 2 0 0 0 0.14602 1 32629 32629 28.487 11.545 1 739480 1147 6783 822 830 1255 1255 -0.006182179560028089 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2811889648438 2 511.281857 1020.54916 -0.34792 -0.00017788 -0.76044 -0.0003888 -1.1084 -0.00056669 511.2813267681964 55.844 0.23407 55.844 55.719 55.953 0 25 16 2 0 0 0 0.010301 1 31015 31015 79.596 43.469 1 11642000 1148 3332 823 831 1256 1256 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2816772460938 2 511.281857 1020.54916 -1.1345 -0.00058004 1.1347 0.00058015 0.00021011 1.0742E-07 511.28224778305827 56.305 0.23293 55.819 55.708 55.941 -0.48554 20 11 2 0 0 0 0.033587 1 30567 30567 53.404 22.767 1 7269600 1149 3332 823 831 1257 1257 0.03970920866152028 ALDEVFTKV 9 Unmodified _ALDEVFTKV_ 0 0 0 ENSG00000117691|ENST00000366988|NENF;ENST00000479589.5_1_1:212606272-212619345:+|nuORF ENSG00000117691|ENST00000366988|NENF ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2832641601562 2 511.281857 1020.54916 1.9772 0.0010109 2.6015 0.0013301 4.5787 0.002341 511.282422772905 62.624 0.53458 56.448 56.088 56.623 -6.1757 49 27 3 0 0 0 0.013609 1 40446 40446 70.332 30.382 1 26000000 1150 3332 823 831 1258 1258 0.03970920866152028 ALDEVYEKCI 10 Unmodified _ALDEVYEKCI_ 0 0 0 REV__ENSG00000158122|ENST00000375234|PRXL2C REV__ENSG00000158122|ENST00000375234|PRXL2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8616027832031 3 394.861885 1181.56383 -0.3755 -0.00014827 -2.0492 -0.00080914 -2.4247 -0.00095742 394.86120185857106 22.706 0.27681 22.706 22.57 22.847 0 22 13 3 0 0 0 0.68209 1 11556 11556 4.7159 2.9736 1 1538600 + 1151 21418 824 832 1259 1259 -0.019693750480200833 ALDEYNMKI 9 Unmodified _ALDEYNMKI_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7708129882812 2 548.7708 1095.52705 0.49291 0.0002705 -0.5394 -0.00029601 -0.046491 -2.5513E-05 548.7710043918872 49.167 0.25364 49.167 49.023 49.277 0 28 11 3 0 0 0 0.032796 1 27039 27039 53.833 23.196 1 6663500 1152 4951 825 833 1260 1260 -0.01689626873940142 ALDEYNMKI 9 Unmodified _ALDEYNMKI_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7713623046875 2 548.7708 1095.52705 1.089 0.00059761 -1.0648 -0.00058435 0.024164 1.3261E-05 548.7710042662558 55.378 0.42879 49.457 49.241 49.669 -5.9211 36 26 2 0 0 0 0.032796 1 35281 35281 53.833 23.196 1 95820000 1153 4951 825 833 1261 1261 -0.01689626873940142 ALDFAEVTS 9 Unmodified _ALDFAEVTS_ 0 0 0 REV__ENST00000580356.5_1_17:8159124-8159921:+|nuORF REV__ENST00000580356.5_1_17:8159124-8159921:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4639282226562 1 952.462204 951.454927 -0.25573 -0.00024357 0.96036 0.0009147 0.70463 0.00067113 952.4627116778157 63.814 0.36318 63.814 63.659 64.022 0 32 14 3 0 0 0 0.41742 1 35555 35555 11.64 1.5664 1 2838800 + 1154 23072 826 834 1262 1262 -0.022742179560054865 ALDGHLYAV 9 Unmodified _ALDGHLYAV_ 0 0 0 ENSG00000176595|ENST00000320248|KBTBD11 ENSG00000176595|ENST00000320248|KBTBD11 ENSG00000176595|ENST00000320248|KBTBD11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2377014160156 2 479.753267 957.491981 0.65773 0.00031555 1.1409 0.00054737 1.7987 0.00086291 479.753451153969 46.449 0.21564 46.449 46.369 46.585 0 13 9 2 0 0 0 0.11012 1 25430 25430 21.747 14.457 1 1396600 1155 8606 827 835 1263 1263 0.011534983804153853 ALDGPGPP 8 Unmodified _ALDGPGPP_ 0 0 0 REV__ENSG00000213445|ENST00000534313|SIPA1 REV__ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.1871337890625 2 362.187229 722.359904 1.3546 0.00049063 -1.3875 -0.00050255 -0.032916 -1.1922E-05 362.1867820156124 43.512 0.33533 38.747 38.65 38.985 -4.7648 31 20 2 0 0 0 0.80232 1 26454 26454 5.2307 2.6532 1 9373900 + 1156 24283 828 836 1264 1264 -0.012381066365264815 ALDKATVLL 9 Unmodified _ALDKATVLL_ 0 0 0 ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF ENSG00000150593|ENST00000280154|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2945556640625 2 472.294768 942.574983 0.56602 0.00026733 -0.67155 -0.00031717 -0.10553 -4.9842E-05 472.29440169042584 53.292 0.29862 53.292 53.141 53.439 0 22 12 2 0 0 0 0.023481 1 29578 29578 60.074 5.3004 1 5185500 1157 6060 829 837 1265 1265 0.10139815108414041 ALDKATVLL 9 Unmodified _ALDKATVLL_ 0 0 0 ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF ENSG00000150593|ENST00000280154|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2945556640625 2 472.294768 942.574983 0.55294 0.00026115 -0.13658 -6.4508E-05 0.41635 0.00019664 472.2946618072696 53.683 0.31747 53.231 53.065 53.383 -0.45173 27 15 2 0 0 0 0.047196 1 29129 29129 46.021 13.715 1 16335000 1158 6060 829 837 1266 1266 0.10139815108414041 ALDKATVLL 9 Unmodified _ALDKATVLL_ 0 0 0 ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF ENSG00000150593|ENST00000280154|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2951049804688 2 472.294768 942.574983 0.84273 0.00039802 -0.12673 -5.9852E-05 0.716 0.00033816 472.2945831189288 59.674 0.41853 53.559 53.377 53.796 -6.1147 40 23 2 0 0 0 0.0090524 2 38275 38275;38445 85.642 4.0284 1 59460000 1159 6060 829 837 1267;1268 1267 0.10139815108414041 ALDKATVLL 9 Unmodified _ALDKATVLL_ 0 0 0 ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF ENSG00000150593|ENST00000280154|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.294768 942.574983 0.70038 0.00033078 0.097418 4.601E-05 0.79779 0.00037679 472.29470137757943 53.85 0.2631 53.85 53.728 53.991 0 0.1453 0.00013537 NaN 85.642 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2750700 1160 6060 829 837 0.10139815108414041 ALDNGLFTL 9 Unmodified _ALDNGLFTL_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2616577148438 2 482.260925 962.507297 0.59797 0.00028838 -0.27574 -0.00013298 0.32222 0.0001554 482.2608699197207 86.425 0.34634 85.921 85.769 86.115 -0.50318 31 14 3 0 0 0 0.30562 1 47271 47271 16.942 2.3606 1 1106000 1161 2656 830 838 1269 1269 0.02454365177618456 ALDPLADKILI 11 Unmodified _ALDPLADKILI_ 0 0 0 ENSG00000088766|ENST00000378863|CRLS1;nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENST00000489345.5_1_20:5990447-6004030:+|nuORF;ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENSG00000088766|ENST00000378863|CRLS1;ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENSG00000088766|ENST00000378863|CRLS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3614501953125 2 591.360639 1180.70673 0.69825 0.00041292 0.37476 0.00022162 1.073 0.00063454 591.3607328635633 81.954 0.24124 81.458 81.287 81.528 -0.4952 15 8 3 0 0 0 0.62014 1 44898 44898 13.042 7.7456 1 514660 1162 1495;15876 831 839 1270 1270 0.12360000405533356 ALDPLDVDL 9 Unmodified _ALDPLDVDL_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MSMS AL20221201_MKP_PDAC_01 4 485.9097900390625 2 485.758215 969.501877 NaN NaN NaN NaN NaN NaN NaN 77.681 1 71.506 71.006 72.006 -6.1757 0 0 0 0.12337 1 50817 50817 39.957 5.8549 1 + 1163 18248 832 840 1271 1271 0.015906415951349118 ALDPNIATL 9 Unmodified _ALDPNIATL_ 0 0 0 ENSG00000153914|ENST00000334121|SREK1;ENST00000520580.5_1_5:65455027-65458421:+|nuORF;nc|ENSG00000153914|Q8WXA9|SREK1 ENSG00000153914|ENST00000334121|SREK1 ENSG00000153914|ENST00000334121|SREK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 927.5147705078125 1 927.514573 926.507297 0.33967 0.00031505 -0.87117 -0.00080803 -0.53151 -0.00049298 927.513605396439 63.33 0.25845 63.33 63.146 63.405 0 16 10 2 0 0 0 0.06294 1 35276 35276 41.84 11.203 1 2284500 1164 6280 833 841 1272 1272 0.04110365177609765 ALDPNIATL 9 Unmodified _ALDPNIATL_ 0 0 0 ENSG00000153914|ENST00000334121|SREK1;ENST00000520580.5_1_5:65455027-65458421:+|nuORF;nc|ENSG00000153914|Q8WXA9|SREK1 ENSG00000153914|ENST00000334121|SREK1 ENSG00000153914|ENST00000334121|SREK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2609252929688 2 464.260925 926.507297 0.61942 0.00028757 -0.76983 -0.0003574 -0.1504 -6.9825E-05 464.2606004898961 63.292 0.28783 63.292 63.146 63.434 0 18 12 2 0 0 0 0.1773 1 35305 35305 25.399 7.2643 1 1301400 1165 6280 833 841 1273 1273 0.04110365177609765 ALDQEIIEV 9 Unmodified _ALDQEIIEV_ 0 0 0 ENSG00000182774|ENST00000647841|RPS17;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENST00000461663.1_1_5:116052154-116052343:+|nuORF;ENST00000396783.2_1_6:29457050-29457287:-|nuORF ENSG00000182774|ENST00000647841|RPS17 ENSG00000182774|ENST00000647841|RPS17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2739868164062 2 515.276772 1028.53899 0.26165 0.00013482 -1.1703 -0.00060303 -0.90866 -0.00046821 515.2761938556507 65.828 0.25635 65.828 65.738 65.995 0 23 13 2 0 0 0 0.03568 1 36711 36711 52.268 10.174 1 3089500 1166 9086 834 842 1274 1274 0.02586313140909624 ALDRCYSVY 9 Unmodified _ALDRCYSVY_ 0 0 0 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.8955383300781 3 363.839303 1088.49608 1.7983 0.00065429 0.68358 0.00024871 2.4819 0.00090301 363.8392287510789 21.713 0.65734 18.978 18.697 19.354 -2.7348 67 41 3 0 0 0 0.21367 1 11698 11698 2.7352 0.23671 1 5754400 1167 2933 835 843 1275 1275 -0.044627801881688356 ALDSGAAIF 9 Unmodified _ALDSGAAIF_ 0 0 0 REV__ENSG00000130958|ENST00000253270|SLC35D2 REV__ENSG00000130958|ENST00000253270|SLC35D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4468383789062 1 864.44616 863.438883 0.46118 0.00039867 0.23284 0.00020128 0.69402 0.00059994 864.4455282996713 57.439 0.18665 57.439 57.324 57.51 0 11 7 2 0 0 0 0.12841 1 31946 31946 30.225 5.5509 1 493910 + 1168 19758 836 844 1276 1276 0.001701205977610698 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7744750976562 2 478.7742 955.533846 0.21636 0.00010359 -0.55862 -0.00026745 -0.34226 -0.00016387 478.7739144682857 37.393 0.31091 37.393 37.238 37.549 0 28 16 2 0 0 0 0.023481 1 19851 19851 60.074 34.675 1 11682000 1169 3989 837 845 1277 1277 0.0543005406894963 ALDSQVPKV 9 Unmodified _ALDSQVPKV_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.77587890625 2 478.7742 955.533846 0.87715 0.00041996 0.37559 0.00017982 1.2527 0.00059978 478.77432254700614 42.947 0.36746 38.263 38.089 38.457 -4.6846 54 23 3 0 0 0 0.0089732 2 25941 25941;26081 86.332 46.382 1 25781000 1170 3989 837 845 1278;1279 1278 0.0543005406894963 ALDSTNVEA 9 Unmodified _ALDSTNVEA_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2230529785156 2 460.221997 918.429441 1.4771 0.00067977 0.16829 7.7452E-05 1.6453 0.00075722 460.22189759131237 33.917 0.31338 29.932 29.731 30.045 -3.9853 29 16 2 0 0 0 0.1773 1 19473 19473 25.399 10.561 1 10490000 1171 2161 838 846 1280 1280 -0.03303692478425546 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.4832763671875 1 961.483667 960.476391 0.49127 0.00047235 -0.21576 -0.00020745 0.27551 0.00026489 961.4833408219425 49.701 0.34712 49.701 49.487 49.834 0 47 15 4 0 0 0 0.0083938 2 27382 27271;27382 108 36.863 1 35655000 1172 4442 839 847 1281;1282 1282 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2460021972656 2 481.245472 960.476391 0.67939 0.00032695 -0.33575 -0.00016158 0.34363 0.00016537 481.24529083003193 49.679 0.52533 49.679 49.441 49.966 0 68 23 5 0 0 0 0.0095811 2 27283 27283;27395 81.613 30.758 1 123150000 1173 4442 839 847 1283;1284 1283 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2459716796875 2 481.245472 960.476391 0.54932 0.00026436 0.35768 0.00017213 0.907 0.00043649 481.2455977497269 57.881 0.55151 51.854 51.569 52.121 -6.0275 74 30 3 0 0 0 0.070838 3 36907 36907;37046;37176 39.957 22.127 1 206970000 1174 4442 839 847 1285;1286;1287 1285 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.4789428710938 1 961.483667 960.476391 0.33486 0.00032196 -2.1103 -0.002029 -1.7755 -0.0017071 961.47979638082 57.88 0.33864 51.852 51.65 51.989 -6.0275 31 19 2 0 0 0 0.0071894 1 36994 36994 111.29 42.182 1 63360000 1175 4442 839 847 1288 1288 -0.005428329272717747 ALDSTNVEL 9 Unmodified _ALDSTNVEL_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 481.245472 960.476391 1.0103 0.00048622 -0.18889 -9.0902E-05 0.82144 0.00039532 481.2454622345359 49.698 0.23208 49.649 49.531 49.763 -0.048824 -0.015067 0.00011873 NaN 81.613 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1126400 1176 4442 839 847 -0.005428329272717747 ALDTNQVLL 9 Unmodified _ALDTNQVLL_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7792663574219 2 493.779482 985.544411 0.12329 6.0876E-05 -0.0061053 -3.0147E-06 0.11718 5.7861E-05 493.77942045214246 62.782 0.53283 62.782 62.589 63.122 0 60 22 4 0 0 0 0.019303 1 34951 34951 64.236 19.829 1 7944000 1177 8122 840 848 1289 1289 0.05106036723384477 ALDTNQVSL 9 Unmodified _ALDTNQVSL_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7530822753906 2 480.753464 959.492375 0.7863 0.00037802 -1.3433 -0.0006458 -0.55702 -0.00026779 480.7525389798424 47.78 0.29174 47.78 47.644 47.936 0 23 13 2 0 0 0 0.047196 1 26188 26188 46.021 11.919 1 4200600 1178 8122 841 849 1290 1290 0.011008733096218748 ALDTNQVSL 9 Unmodified _ALDTNQVSL_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MSMS AL20221201_MKP_PDAC_01 4 480.754150390625 2 480.753464 959.492375 NaN NaN NaN NaN NaN NaN NaN 55.511 1 49.59 49.09 50.09 -5.9211 0 0 0 0.020219 1 35347 35347 78.149 23.376 1 1179 8122 841 849 1291 1291 0.011008733096218748 ALDTSNVMV 9 Oxidation (M) _ALDTSNVM(Oxidation (M))V_ ALDTSNVM(1)V ALDTSNVM(52)V 0 0 1 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.235107421875 2 483.23405 964.453547 1.3387 0.0006469 1.3483 0.00065155 2.687 0.0012984 483.23453103562866 47.882 0.54 42.648 42.348 42.888 -5.2339 52 32 2 0 0 0 0.03568 1 29656 29656 52.268 22.044 1 20850000 1180 10217 842 850 1292 1292 1661 -0.030101753163989997 ALDTSNVMV 9 Unmodified _ALDTSNVMV_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2367858886719 2 475.236593 948.458632 0.65466 0.00031112 3.9668 0.0018852 4.6215 0.0021963 475.2363921197305 57.816 0.36495 51.788 51.592 51.957 -6.0275 34 20 2 0 0 0 0.070838 1 37082 37082 39.957 20.518 1 34798000 1181 10217 842 851 1293 1293 -0.017658714537901687 ALDYALVMNY 10 Unmodified _ALDYALVMNY_ 0 0 0 REV__ENSG00000088812|ENST00000262919|ATRN REV__ENSG00000088812|ENST00000262919|ATRN MSMS AL20221201_MKP_PDAC_01 4 586.7874755859375 2 586.78645 1171.55835 NaN NaN NaN NaN NaN NaN NaN 40.426 1 35.897 35.397 36.397 -4.5294 0 0 0 0.54588 1 24138 24138 24.021 8.1734 1 + 1182 17811 843 852 1294 1294 -0.02057053839848777 ALDYEAGQVTL 11 Unmodified _ALDYEAGQVTL_ 0 0 0 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2977905273438 2 590.298236 1178.58192 0.41263 0.00024357 1.0839 0.00063983 1.4965 0.00088341 590.2987816322175 60.704 0.32359 60.704 60.514 60.838 0 30 13 3 0 0 0 0.30985 1 33810 33810 26.268 11.43 1 2761900 1183 10308 844 853 1295 1295 -0.00022916801663086517 ALEAEKRAL 9 Unmodified _ALEAEKRAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144873596-144874681:-|nuORF nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7936706542969 2 500.792924 999.571294 0.2234 0.00011188 -0.11716 -5.8674E-05 0.10624 5.3204E-05 500.7930635755062 48.215 0.2178 48.215 48.112 48.33 0 14 10 2 0 0 0 0.1773 1 26461 26461 25.399 0 1 2929000 1184 8930 845 854 1296 1296 0.07149145334562945 ALEAGCQAWD 10 Unmodified _ALEAGCQAWD_ 0 0 0 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7673950195312 2 532.229299 1062.44404 0.74807 0.00039815 -0.34713 -0.00018475 0.40095 0.00021339 532.7315017082528 60.412 0.35791 60.412 60.178 60.536 0 75 15 7 0 0 0 0.22149 1 33744 33744 20.454 2.3186 1 13015000 1185 10575 846 855 1297 1297 -0.08467943601931438 ALEAGCQAWD 10 Unmodified _ALEAGCQAWD_ 0 0 0 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 532.229299 1062.44404 0.50159 0.00026696 1.0682 0.00056852 1.5698 0.00083548 532.2296995518025 66.787 0.43078 60.611 60.412 60.843 -6.1757 0.099628 0.00036671 NaN 14.838 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 26258000 1186 10575 846 855 -0.08467943601931438 ALEARVAQL 9 Unmodified _ALEARVAQL_ 0 0 0 ENST00000544490.5_1_11:72532712-72533589:+|nuORF;nc|ENSG00000168010|Q8NAA4-3|ATG16L2;ENST00000439504.6_1_11:72525490-72534007:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2 ENST00000544490.5_1_11:72532712-72533589:+|nuORF ENST00000544490.5_1_11:72532712-72533589:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7879333496094 2 485.787641 969.56073 -0.021844 -1.0612E-05 -0.97545 -0.00047386 -0.99729 -0.00048447 485.78678554106943 40.453 0.34229 40.453 40.333 40.675 0 23 17 2 0 0 0 0.07087 1 21733 21733 39.95 1.7741 1 5092500 1187 7702 847 856 1298 1298 0.07473162680128098 ALEARVAQL 9 Unmodified _ALEARVAQL_ 0 0 0 ENST00000544490.5_1_11:72532712-72533589:+|nuORF;nc|ENSG00000168010|Q8NAA4-3|ATG16L2;ENST00000439504.6_1_11:72525490-72534007:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2 ENST00000544490.5_1_11:72532712-72533589:+|nuORF ENST00000544490.5_1_11:72532712-72533589:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7880249023438 2 485.787641 969.56073 0.59775 0.00029038 -0.0026522 -1.2884E-06 0.5951 0.00028909 485.78752552457144 40.402 0.25309 40.407 40.276 40.529 0.0050583 15 11 2 0 0 0 0.1685 1 21566 21566 26.268 2.2476 1 2618400 1188 7702 847 856 1299 1299 0.07473162680128098 ALEARVAQL 9 Unmodified _ALEARVAQL_ 0 0 0 ENST00000544490.5_1_11:72532712-72533589:+|nuORF;nc|ENSG00000168010|Q8NAA4-3|ATG16L2;ENST00000439504.6_1_11:72525490-72534007:+|nuORF;nc|ENSG00000168010|Q8NAA4-2|ATG16L2;ENSG00000168010|ENST00000321297|ATG16L2 ENST00000544490.5_1_11:72532712-72533589:+|nuORF ENST00000544490.5_1_11:72532712-72533589:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7883605957031 2 485.787641 969.56073 0.42237 0.00020518 -2.1282 -0.0010338 -1.7058 -0.00082866 485.78779771836963 45.294 0.67345 40.339 39.995 40.669 -4.9549 134 45 5 0 0 0 0.10247 1 27861 27861 32.786 2.1491 1 86016000 1189 7702 847 856 1300 1300 0.07473162680128098 ALEAYSNIL 9 Unmodified _ALEAYSNIL_ 0 0 0 ENST00000265138.3_1_5:90667021-90667204:-|nuORF ENST00000265138.3_1_5:90667021-90667204:-|nuORF ENST00000265138.3_1_5:90667021-90667204:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2657775878906 2 497.266207 992.517862 0.44865 0.0002231 0.86045 0.00042787 1.3091 0.00065097 497.266858843173 67.096 0.30145 67.096 66.992 67.294 0 21 12 2 0 0 0 0.18465 1 37430 37430 24.674 1.5255 1 1859300 1190 11327 848 857 1301 1301 0.02130347832053303 ALEDCDCAQD 10 Unmodified _ALEDCDCAQD_ 0 0 0 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 ENSG00000180447|ENST00000298743|GAS1 MSMS AL20221201_MKP_PDAC_01 4 541.6941528320312 2 541.691889 1081.36922 NaN NaN NaN NaN NaN NaN NaN 109.2 1 103.03 102.53 103.53 -6.1757 0 0 0 0.97855 1 72943 72943 2.9952 0.69251 1 1191 8904 849 858 1302 1302 -0.1682049419548548 ALEDHMDGHF 10 Unmodified _ALEDHMDGHF_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;ENST00000548263.5_1_12:54105730-54106093:-|nuORF nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.24560546875 2 586.24548 1170.47641 0.083884 4.9177E-05 -0.42751 -0.00025063 -0.34362 -0.00020145 586.2459696236481 63.979 0.52242 63.979 63.779 64.301 0 68 21 4 0 0 0 0.68719 1 35823 35823 4.3292 0.73274 1 3338600 1192 465 850 859 1303 1303 -0.10201156198922945 ALEEPAVDML 10 Unmodified _ALEEPAVDML_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.1825866699219 3 363.182847 1086.52671 -0.30086 -0.00010927 0.53917 0.00019582 0.23832 8.6552E-05 363.18306771594115 51.988 0.35208 51.988 51.823 52.175 0 33 15 3 0 0 0 0.35903 1 28727 28727 15.739 4.8397 1 14621000 1193 6530 851 860 1304 1304 -0.01309046593792118 ALEEQLQQIR 10 Unmodified _ALEEQLQQIR_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3380126953125 2 614.338227 1226.6619 0.073152 4.494E-05 -0.07921 -4.8662E-05 -0.0060573 -3.7212E-06 614.3380945061673 41.924 0.24479 41.924 41.804 42.049 0 25 12 3 0 0 0 6.7445E-07 1 22669 22669 133.05 75.33 1 6133500 + 1194 169;158 852 861 1305 1305 0.05763569592181739 ALEEYREII 9 Unmodified _ALEEYREII_ 0 0 0 REV__nc|ENSG00000160460|Q9H254-2|SPTBN4 REV__nc|ENSG00000160460|Q9H254-2|SPTBN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3042602539062 2 568.303321 1134.59209 NaN NaN NaN NaN NaN NaN NaN 95.298 1 94.93 94.43 95.43 -0.36814 0 0 0 0.84369 1 52054 52054 2.3027 0 1 + 1195 21546 853 862 1306 1306 0.030176909235706262 ALEFGKWA 8 Unmodified _ALEFGKWA_ 0 0 0 ENST00000596900.5_1_19:41036434-41060733:+|nuORF ENST00000596900.5_1_19:41036434-41060733:+|nuORF ENST00000596900.5_1_19:41036434-41060733:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.249755859375 2 461.245078 920.475603 NaN NaN NaN NaN NaN NaN NaN 16.81 1 16.81 16.31 17.31 0 0 0 0 0.97444 1 8233 8233 4.756 1.8668 1 1196 15770 854 863 1307 1307 0.012184172143292926 ALEKMMESSF 10 Unmodified _ALEKMMESSF_ 0 0 0 ENST00000555784.5_1_10:84711227-84745358:+|nuORF;nc|ENSG00000185737|P56975-3|NRG3;ENSG00000185737|ENST00000372141|NRG3;nc|ENSG00000185737|P56975-2|NRG3;nc|ENSG00000185737|P56975|NRG3 ENST00000555784.5_1_10:84711227-84745358:+|nuORF ENST00000555784.5_1_10:84711227-84745358:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.246337890625 2 586.769942 1171.52533 0.085192 4.9988E-05 0.44117 0.00025887 0.52636 0.00030885 586.7703875159978 63.979 0.22153 63.979 63.879 64.1 0 15 8 2 0 0 0 0.22941 1 35714 35714 9.3831 0 1 1045500 1197 9406 855 864 1308 1308 -0.05357003954213724 ALENYITAL 9 Unmodified _ALENYITAL_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2737426757812 2 504.274032 1006.53351 0.042463 2.1413E-05 -0.42077 -0.00021218 -0.3783 -0.00019077 504.27395366238363 84.957 0.38837 84.455 84.226 84.614 -0.5015 40 17 3 0 0 0 0.46577 1 46549 46549 9.3474 0 1 4669100 1198 5399 856 865 1309 1309 0.03050634349062875 ALEPSFCSIF 10 Unmodified _ALEPSFCSIF_ 0 0 0 ENSG00000127220|ENST00000247706|ABHD8 ENSG00000127220|ENST00000247706|ABHD8 ENSG00000127220|ENST00000247706|ABHD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2647094726562 2 557.267893 1112.52123 1.389 0.00077407 -2.5092 -0.0013983 -1.1202 -0.00062423 557.2667731748144 79.417 1.3218 73.241 72.5 73.822 -6.1757 206 77 4 0 0 0 0.42068 1 51992 51992 20.454 2.3186 1 113940000 1199 3992 857 866 1310 1310 -0.03052725385600752 ALERELDQRRR 11 Unmodified _ALERELDQRRR_ 0 0 0 ENSG00000183246|ENST00000433039|RIMBP3C;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000275793|ENST00000619918|RIMBP3 ENSG00000183246|ENST00000433039|RIMBP3C ENSG00000183246|ENST00000433039|RIMBP3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2716674804688 3 481.270929 1440.79096 -0.51512 -0.00024791 1.832 0.00088168 1.3169 0.00063377 481.2716993753043 55.613 0.23068 55.613 55.461 55.692 0 29 16 2 0 0 0 0.70435 1 30891 30891 3.8459 1.4111 1 8988400 1200 9128 858 867 1311 1311 0.08819344274957075 ALESFEKAL 9 Unmodified _ALESFEKAL_ 0 0 0 ENSG00000165917|ENST00000298854|RAPSN;nc|ENSG00000165917|Q13702-2|RAPSN ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2737731933594 2 504.274032 1006.53351 0.042463 2.1413E-05 -0.42077 -0.00021218 -0.3783 -0.00019077 504.27395366238363 84.957 0.38837 84.455 84.226 84.614 -0.5015 40 17 3 0 0 0 0.2001 1 46448 46448 23.148 0 1 4669100 1201 7407 859 868 1312 1312 0.030506343490856125 ALEYGFTL 8 Unmodified _ALEYGFTL_ 0 0 0 REV__ENSG00000197496|ENST00000359271|SLC2A10 REV__ENSG00000197496|ENST00000359271|SLC2A10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2371826171875 2 457.236919 912.459284 NaN NaN NaN NaN NaN NaN NaN 55.54 1 55.54 55.04 56.04 0 0 0 0 0.95607 1 30856 30856 9.3474 2.9933 1 + 1202 23932 860 869 1313 1313 -0.0004470874242770151 ALFATTTV 8 Unmodified _ALFATTTV_ 0 0 0 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2305908203125 2 412.231636 822.448719 -0.57369 -0.00023649 -2.3965 -0.00098792 -2.9702 -0.0012244 412.2305952031801 18.797 0.096628 18.797 18.763 18.86 0 8 5 2 0 0 0 0.80676 1 9375 9375 2.5775 0 1 644410 + 1203 29818 861 870 1314 1314 0.030393086031267558 ALFAWSGEQEL 11 Unmodified _ALFAWSGEQEL_ 0 0 0 REV__ENST00000358387.8_1_5:134209678-134209915:+|nuORF REV__ENST00000358387.8_1_5:134209678-134209915:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.540283203125 3 417.539911 1249.5979 0.41073 0.00017149 0.95844 0.00040019 1.3692 0.00057168 417.5401895444922 47.544 0.23746 47.544 47.427 47.665 0 20 10 2 0 0 0 0.5551 1 26042 26042 11.065 4.0282 1 2570300 + 1204 25876 862 871 1315 1315 -0.016912105647634235 ALFCLFVF 8 Unmodified _ALFCLFVF_ 0 0 0 ENST00000559664.5_1_15:34629101-34629167:-|nuORF ENST00000559664.5_1_15:34629101-34629167:-|nuORF ENST00000559664.5_1_15:34629101-34629167:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7828369140625 2 480.2566 958.498647 0.058959 2.8316E-05 2.6856 0.0012898 2.7445 0.0013181 480.25657107668644 52.32 0.32045 52.32 52.103 52.423 0 24 13 3 0 0 0 8.7369 1 28975 28975 11.114 0 1 1171900 1205 15299 863 872 1316 1316 0.017737200074520842 ALFCSSDDE 9 Unmodified _ALFCSSDDE_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.692626953125 2 493.692215 985.369877 0.18492 9.1293E-05 0.703 0.00034707 0.88792 0.00043836 493.69260140190437 61.47 0.27655 61.47 61.321 61.597 0 22 12 2 0 0 0 0.54444 1 34261 34261 4.756 1.8668 1 1385500 1206 1357 864 873 1317 1317 -0.12339331484110971 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.774169921875 2 523.773865 1045.53318 0.46207 0.00024202 -0.03064 -1.6048E-05 0.43143 0.00022597 523.7738063734098 83.706 0.43192 83.706 83.493 83.925 0 73 21 4 0 0 0 0.013472 2 46445 46346;46445 70.716 26.309 1 8245300 1207 5043 865 874 1318;1319 1319 0.012232146292262769 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1046.540649414062 1 1046.54045 1045.53318 -0.4258 -0.00044561 1.0929 0.0011437 0.66705 0.0006981 1046.541937509098 83.71 0.29946 83.71 83.516 83.816 0 18 15 2 0 0 0 0.16226 1 46402 46402 26.884 9.9414 1 600360 1208 5043 865 874 1320 1320 0.012232146292262769 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7728271484375 2 523.773865 1045.53318 0.41099 0.00021527 0.52251 0.00027367 0.9335 0.00048894 523.7740950864467 84.188 0.33606 83.688 83.528 83.864 -0.49961 37 14 3 0 0 0 0.06187 2 46039 46039;46139 42.095 13.608 1 1866800 1209 5043 865 874 1321;1322 1321 0.012232146292262769 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MSMS AL20221201_MKP_PDAC_01 4 523.7723388671875 2 523.773865 1045.53318 NaN NaN NaN NaN NaN NaN NaN 93.13 1 86.954 86.454 87.454 -6.1757 0 0 0 0.096036 1 61625 61625 44.407 8.3628 1 1210 5043 865 874 1323 1323 0.012232146292262769 ALFEEVPEL 9 Unmodified _ALFEEVPEL_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.3081665039062 2 523.773865 1045.53318 0.21646 0.00011338 0.54942 0.00028777 0.76588 0.00040115 523.7734457169378 93.093 0.09304 86.918 86.871 86.964 -6.1757 7 5 2 0 0 0 0.1474 1 61600 61600 28.487 16.246 1 7998500 1211 5043 865 874 1324 1324 0.012232146292262769 ALFEGKVQL 9 Unmodified _ALFEGKVQL_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7926330566406 2 502.792392 1003.57023 -0.079446 -3.9945E-05 0.95712 0.00048123 0.87767 0.00044129 502.7928079313155 59.355 0.32254 58.864 58.685 59.007 -0.49079 43 14 4 0 0 0 0.012148 1 32331 32331 74.423 23.568 1 13986000 1212 6540 866 875 1325 1325 0.06858930965665877 ALFEGKVQL 9 Unmodified _ALFEGKVQL_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7928161621094 2 502.792392 1003.57023 0.93066 0.00046793 0.54654 0.0002748 1.4772 0.00074272 502.7929959297419 64.949 0.61053 58.774 58.574 59.184 -6.1757 61 33 3 0 0 0 0.0082485 2 42054 42054;42189 96.285 46.352 1 50740000 1213 6540 866 875 1326;1327 1326 0.06858930965665877 ALFEGKVQL 9 Unmodified _ALFEGKVQL_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 502.792392 1003.57023 0.46832 0.00023547 -0.84716 -0.00042595 -0.37884 -0.00019048 502.7925180536728 58.874 0.17645 58.874 58.788 58.965 0 -0.0011373 -0.0015713 NaN 96.285 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1303500 1214 6540 866 875 0.06858930965665877 ALFEGKVQL 9 Unmodified _ALFEGKVQL_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.792392 1003.57023 0.43877 0.00022061 3.502 0.0017608 3.9408 0.0019814 502.7943554335024 59.048 0.14261 58.988 58.943 59.085 -0.060719 0.11277 0.0028022 NaN 96.285 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1673700 1215 6540 866 875 0.06858930965665877 ALFEQSGQF 9 Unmodified _ALFEQSGQF_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7467651367188 2 513.748182 1025.48181 0.50524 0.00025957 -2.8064 -0.0014418 -2.3012 -0.0011822 513.746992559275 67.767 0.35762 67.285 67.075 67.432 -0.48218 26 15 2 0 0 0 0.30562 1 37023 37023 16.942 2.104 1 1725500 + 1216 18474 867 876 1328 1328 -0.029911093447935855 ALFEQSGQF 9 Unmodified _ALFEQSGQF_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.748182 1025.48181 0.41798 0.00021474 -2.0726 -0.0010648 -1.6546 -0.00085007 513.7472771058548 67.203 0.46636 67.203 66.971 67.437 0 -0.040808 0.00023982 NaN 16.942 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2148400 + 1217 18474 867 876 -0.029911093447935855 ALFFQLVDV 9 Unmodified _ALFFQLVDV_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2969360351562 2 526.294768 1050.57498 0.38133 0.00020069 3.7695 0.0019839 4.1509 0.0021846 526.2967498616013 100.82 0.10548 100.77 100.71 100.82 -0.04216 7 3 3 0 0 0 0.48152 1 56024 56024 8.5933 3.3626 1 2502900 1218 3388 868 877 1329 1329 0.051718151084287456 ALFGALFLA 9 Unmodified _ALFGALFLA_ 0 0 0 nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP nc|ENSG00000100979|P55058-3|PLTP nc|ENSG00000100979|P55058-3|PLTP MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.5394287109375 1 922.539666 921.53239 0.54975 0.00050716 0.19225 0.00017736 0.742 0.00068452 922.5394791167411 101.81 0.080803 95.634 95.6 95.68 -6.1757 11 5 3 0 0 0 0.047696 1 68343 68343 45.75 9.2838 1 24139000 1219 1896 869 878 1330 1330 0.06848464770837381 ALFGGCVSI 9 Carbamidomethyl (C) _ALFGGC(Carbamidomethyl (C))VSI_ ALFGGC(1)VSI ALFGGC(67)VSI 0 1 0 ENSG00000151715|ENST00000281441|TMEM45B;ENST00000527754.1_1_11:129698120-129727360:+|nuORF ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MSMS AL20221201_MKP_PDAC_01 4 923.46484375 1 923.465515 922.458238 0.8713 0.00080462 -0.083999 -7.757E-05 0.7873 0.00072705 923.4651683115475 81.748 0.40192 75.572 75.378 75.78 -6.1757 33 22 2 0 0 0 0.016494 2 53605 53605;53727 67.035 20.114 1 10643000 1220 6141 870 879 1331;1332 1331 613 -0.006092463829645567 ALFGTPQSL 9 Unmodified _ALFGTPQSL_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2561645507812 2 467.255643 932.496732 1.1318 0.00052885 0.8368 0.000391 1.9686 0.00091985 467.25615917045053 88.31 0.58913 82.134 81.923 82.512 -6.1757 60 32 2 0 0 0 0.14602 1 58422 58422 28.487 5.3384 1 18102000 + 1221 19478 871 880 1333 1333 0.027783825231949777 ALFMTVDK 8 Unmodified _ALFMTVDK_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7803344726562 2 462.746596 923.478639 0.73578 0.00034048 -1.7621 -0.00081541 -1.0263 -0.00047494 462.74657632918314 68.799 0.13625 68.824 68.724 68.86 0.025146 8 5 2 0 0 0 8.7369 1 37820 37820 9.3474 3.587 1 626670 1222 3541 872 881 1334 1334 0.013839242768312943 ALFPAPLAQI 10 Unmodified _ALFPAPLAQI_ 0 0 0 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8118896484375 2 520.810585 1039.60662 2.1855 0.0011382 -0.24254 -0.00012632 1.943 0.0010119 520.8100702645283 95.984 0.35464 95.988 95.79 96.145 0.004158 28 12 4 0 0 0 0.031389 1 53326 53326 67.344 37.119 1 3119600 1223 7591 873 882 1335 1335 0.08839807862364069 ALFPGEELKHA 11 Unmodified _ALFPGEELKHA_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5526733398438 3 404.552151 1210.63462 0.76199 0.00030827 -0.44075 -0.00017831 0.32124 0.00012996 404.55191729671236 42.65 0.29069 42.65 42.507 42.798 0 26 14 2 0 0 0 0.65706 1 23113 23113 8.2864 4.4101 1 3257800 1224 2053 874 883 1336 1336 0.03773086051796781 ALFPGEELKHA 11 Unmodified _ALFPGEELKHA_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5525512695312 3 404.552151 1210.63462 1.7256 0.00069809 -0.59481 -0.00024063 1.1308 0.00045745 404.5518320549495 47.694 0.44637 42.46 42.229 42.675 -5.2339 42 26 2 0 0 0 0.15597 1 29645 29645 35.996 25.097 1 16130000 1225 2053 874 883 1337 1337 0.03773086051796781 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 900.5535888671875 1 900.555316 899.54804 1.5526 0.0013982 -1.8163 -0.0016357 -0.26378 -0.00023755 900.5539768141894 100.45 0.1083 100.42 100.35 100.46 -0.036301 6 3 2 0 0 0 0.028712 1 55802 55802 56.048 3.3552 1 22728000 1226 7562 875 884 1338 1338 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 900.55615234375 1 900.555316 899.54804 0.74377 0.0006698 0.40847 0.00036785 1.1522 0.0010377 900.55541328531 101.4 0.11111 95.221 95.163 95.274 -6.1757 14 5 4 0 0 0 0.028712 1 68027 68027 56.048 3.3552 1 92471000 1227 7562 875 884 1339 1339 0.09424751287883737 ALFPGVALL 9 Unmodified _ALFPGVALL_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7819213867188 2 450.781296 899.54804 1.0493 0.00047299 0.74065 0.00033387 1.7899 0.00080687 450.7813953709584 101.4 0.12883 95.221 95.163 95.291 -6.1757 17 6 4 0 0 0 0.028712 1 68028 68028 56.048 19.582 1 113640000 1228 7562 875 884 1340 1340 0.09424751287883737 ALFPHLLQPVL 11 Unmodified _ALFPHLLQPVL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.3795166015625 2 624.379166 1246.74378 1.3519 0.0008441 -0.30887 -0.00019285 1.043 0.00065125 624.3790204792618 91.741 0.30717 91.778 91.586 91.893 0.036499 22 10 3 0 0 0 0.013383 1 51007 51007 64.236 38.837 1 6894000 1229 3762;16168 876 885 1341 1341 0.13027716741930817 ALFPHLLQPVL 11 Unmodified _ALFPHLLQPVL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3795166015625 2 624.379166 1246.74378 1.1148 0.00069608 0.13599 8.4911E-05 1.2508 0.00078099 624.3793905281474 100.14 0.14561 93.96 93.884 94.03 -6.1757 23 8 4 0 0 0 0.00081493 1 66891 66891 85.272 58.388 1 56673000 1230 3762;16168 876 885 1342 1342 0.13027716741930817 ALFQHITAL 9 Unmodified _ALFQHITAL_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.29296875 2 507.292559 1012.57057 0.93435 0.00047399 -1.0613 -0.00053839 -0.12694 -6.4397E-05 507.29265562624147 64.511 0.37072 64.5 64.358 64.729 -0.010529 32 18 2 0 0 0 0.07916 1 35296 35296 37.974 5.1883 1 16319000 1231 718 877 886 1343 1343 0.06478350685495116 ALFQHITAL 9 Unmodified _ALFQHITAL_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2937927246094 2 507.292559 1012.57057 0.90559 0.0004594 -0.35732 -0.00018127 0.54827 0.00027813 507.2927609438608 85.924 0.72627 79.748 79.345 80.071 -6.1757 75 40 3 0 0 0 0.011671 2 56662 56530;56662 75.761 22.185 1 13422000 1232 718 877 886 1344;1345 1345 0.06478350685495116 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8240356445312 2 527.824027 1053.6335 0.47466 0.00025054 0.4375 0.00023092 0.91216 0.00048146 527.8242937649356 68.315 0.35087 68.34 68.168 68.519 0.025154 51 17 4 0 0 0 0.0083087 2 37504 37504;37603 97.075 66.85 1 16259000 1233 4270 878 887 1346;1347 1346 0.10882916473565274 ALFQRPPLI 9 Unmodified _ALFQRPPLI_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.272216796875 2 527.824027 1053.6335 1.0508 0.00055466 -1.6409 -0.00086609 -0.59003 -0.00031143 527.8233920326389 85.999 0.75079 79.823 79.479 80.23 -6.1757 102 41 3 0 0 0 0.13712 1 56593 56593 30.225 16.717 1 21406000 1234 4270 878 887 1348 1348 0.10882916473565274 ALFRGGGH 8 Unmodified _ALFRGGGH_ 0 0 0 REV__ENSG00000138131|ENST00000260702|LOXL4 REV__ENSG00000138131|ENST00000260702|LOXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.7198791503906 2 407.719562 813.42457 -0.16657 -6.7915E-05 1.9204 0.000783 1.7539 0.00071508 407.72028988767823 38.272 0.2231 38.289 38.151 38.374 0.01704 16 9 2 0 0 0 0.80975 1 20330 20330 0.79363 0.79363 1 1763300 + 1235 20307 879 888 1349 1349 0.010395129601533881 ALFSTFELF 9 Unmodified _ALFSTFELF_ 0 0 0 nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7769165039062 2 537.778951 1073.54335 NaN NaN NaN NaN NaN NaN NaN 66.579 1 66.579 66.079 67.079 0 0 0 0 0.40995 1 37133 37133 19.439 0.18201 1 1236 7298 880 889 1350 1350 0.009518223544773718 ALGAKGAL 8 Unmodified _ALGAKGAL_ 0 0 0 ENSG00000154822|ENST00000615277|PLCL2 ENSG00000154822|ENST00000615277|PLCL2 ENSG00000154822|ENST00000615277|PLCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.7220458984375 2 350.721239 699.427924 1.6518 0.00057932 -0.16498 -5.7863E-05 1.4868 0.00052146 350.72115244153355 34.81 0.28336 30.714 30.599 30.882 -4.0951 25 16 2 0 0 0 0.50586 1 20126 20126 34.187 6.0141 1 7471200 1237 6351 881 890 1351 1351 0.0661876301413713 ALGDQILFV 9 Unmodified _ALGDQILFV_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2;ENST00000522833.5_1_8:30442658-30469842:-|nuORF ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2813720703125 2 488.279118 974.543683 0.22244 0.00010861 1.3825 0.00067502 1.6049 0.00078364 488.2798215575104 88.389 0.34416 88.389 88.163 88.507 0 29 16 2 0 0 0 0.14602 1 48873 48873 28.487 3.813 1 615380 1238 9934 882 891 1352 1352 0.055392420743373805 ALGDQILFV 9 Unmodified _ALGDQILFV_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2;ENST00000522833.5_1_8:30442658-30469842:-|nuORF ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2791748046875 2 488.279118 974.543683 0.60528 0.00029555 0.25248 0.00012328 0.85776 0.00041883 488.2792107746097 88.855 0.43052 88.351 88.112 88.543 -0.50423 47 18 3 0 0 0 0.019303 2 48621 48526;48621 64.236 18.215 1 2828200 1239 9934 882 891 1353;1354 1354 0.055392420743373805 ALGDQILFV 9 Unmodified _ALGDQILFV_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2;ENST00000522833.5_1_8:30442658-30469842:-|nuORF ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5554809570312 1 975.550959 974.543683 0.3604 0.00035159 -0.039066 -3.8111E-05 0.32133 0.00031348 975.5512140263775 88.83 0.314 88.326 88.205 88.519 -0.50423 21 13 2 0 0 0 0.095405 1 48556 48556 34.102 13.649 1 564060 1240 9934 882 891 1355 1355 0.055392420743373805 ALGDTWLQI 9 Unmodified _ALGDTWLQI_ 0 0 0 nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4 nc|ENSG00000144560|Q14135-5|VGLL4 nc|ENSG00000144560|Q14135-5|VGLL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2758178710938 2 508.7742 1015.53385 0.73527 0.00037409 -1.0008 -0.00050917 -0.26551 -0.00013509 508.7740717989893 73.876 0.88739 67.701 67.326 68.213 -6.1757 160 44 5 0 0 0 0.2001 1 48360 48360 23.148 5.0021 1 121370000 1241 5620 883 892 1356 1356 0.026700540689716945 ALGEGNGPPRD 11 Unmodified _ALGEGNGPPRD_ 0 0 0 ENSG00000166148|ENST00000299178|AVPR1A ENSG00000166148|ENST00000299178|AVPR1A ENSG00000166148|ENST00000299178|AVPR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7655639648438 2 541.764894 1081.51524 0.51705 0.00028012 3.661 0.0019834 4.178 0.0022635 541.7673120953892 49.252 0.60575 49.252 49.023 49.629 0 46 27 3 0 0 0 0.42108 1 27068 27068 20.415 2.2796 1 3908100 1242 7438 884 893 1357 1357 -0.022261075728920332 ALGESLALIQ 10 Unmodified _ALGESLALIQ_ 0 0 0 REV__ENSG00000160299|ENST00000359568|PCNT REV__ENSG00000160299|ENST00000359568|PCNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7942810058594 2 507.795132 1013.57571 0.44648 0.00022672 0.47476 0.00024108 0.92124 0.0004678 507.7952457100685 74.694 0.34743 74.74 74.573 74.92 0.045959 28 15 2 0 0 0 0.063761 1 41134 41134 54.774 6.4277 1 8432900 + 1243 21534 885 894 1358 1358 0.06946609757460465 ALGFRGAL 8 Unmodified _ALGFRGAL_ 0 0 0 ENST00000323851.11_1_8:134309379-134309475:-|nuORF ENST00000323851.11_1_8:134309379-134309475:-|nuORF ENST00000323851.11_1_8:134309379-134309475:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.7402038574219 2 402.739963 803.465373 NaN NaN NaN NaN NaN NaN NaN 27.125 1 24.089 23.589 24.589 -3.0365 0 0 0 0.97444 1 15007 15007 4.756 2.1785 1 1244 11795 886 895 1359 1359 0.05577854279761141 ALGFVYKL 8 Unmodified _ALGFVYKL_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7728271484375 2 455.773471 909.53239 0.79874 0.00036405 -0.0089891 -4.097E-06 0.78975 0.00035995 455.7733904052729 67.15 0.30977 67.168 67.028 67.338 0.018028 34 15 3 0 0 0 0.37649 1 36830 36830 46.921 18.434 1 7402000 1245 6214 887 896 1360 1360 0.07400464770853432 ALGFYPAEITL 11 Unmodified _ALGFYPAEITL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8226318359375 2 597.823889 1193.63323 2.3729 0.0014186 -1.3197 -0.00078897 1.0532 0.00062963 597.822822347737 96.835 0.34259 96.828 96.616 96.958 -0.0070114 49 12 5 0 0 0 0.0055162 2 53724 53724;53828 74.423 22.154 1 11098000 1246 10298;10315;10306;10398;16517;10636 888 897 1361;1362 1361 0.044154519630410505 ALGFYPAEITL 11 Unmodified _ALGFYPAEITL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8203735351562 2 597.823889 1193.63323 0.63528 0.00037978 -0.83417 -0.00049868 -0.19889 -0.0001189 597.8232087813457 100.36 0.16703 94.185 94.103 94.27 -6.1757 32 10 4 0 0 0 0.032115 1 67071 67071 54.774 18.647 1 227210000 1247 10298;10315;10306;10398;16517;10636 888 897 1363 1363 0.044154519630410505 ALGGFIETV 9 Unmodified _ALGGFIETV_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.50048828125 1 906.49311 905.485833 0.44619 0.00040447 1.181 0.0010706 1.6272 0.0014751 906.4942861866097 80.213 0.62238 79.724 79.507 80.129 -0.48932 49 24 3 0 0 0 0.46577 1 43854 43854 9.3474 0 1 3186400 + 1248 19751 889 898 1364 1364 0.029309801489148413 ALGHRPRNDCP 11 Unmodified _ALGHRPRNDCP_ 0 0 0 ENST00000519640.5_1_8:38758877-38775429:+|nuORF ENST00000519640.5_1_8:38758877-38775429:+|nuORF ENST00000519640.5_1_8:38758877-38775429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.3045043945312 2 618.306738 1234.59892 1.0671 0.00065981 0.51995 0.00032149 1.5871 0.0009813 618.8099888956464 79.786 0.43178 79.297 79.075 79.507 -0.48932 31 18 3 0 0 0 0.70701 1 43735 43735 3.5965 0 1 1140100 1249 14710 890 899 1365 1365 -0.008992746768399229 ALGILQSFI 9 Unmodified _ALGILQSFI_ 0 0 0 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000119042|Q9UPW6-2|SATB2 ENSG00000182568|ENST00000338745|SATB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2893676757812 2 481.289485 960.564418 NaN NaN NaN NaN NaN NaN NaN 74.975 1 74.498 73.998 74.998 -0.47714 0 0 0 0.70111 1 41036 41036 9.3474 0.75416 1 1250 9067;3411 891 900 1366 1366 0.08255832453994572 ALGLGLLPA 9 Unmodified _ALGLGLLPA_ 0 0 0 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 ENSG00000064547|ENST00000407877|LPAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.5241088867188 1 824.524016 823.516739 0.17113 0.0001411 0.78896 0.00065052 0.96009 0.00079162 824.5245871438972 82.424 0.45782 81.929 81.698 82.156 -0.4952 47 18 3 0 0 0 0.1492 1 45239 45239 28.173 0 1 9100100 1251 877 892 901 1367 1367 0.0979217825380374 ALGLYQEEL 9 Unmodified _ALGLYQEEL_ 0 0 0 REV__ENSG00000271383|ENST00000651566|NBPF19 REV__ENSG00000271383|ENST00000651566|NBPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2722778320312 2 518.27149 1034.52843 0.32202 0.0001669 2.7861 0.001444 3.1081 0.0016109 518.2731447374733 81.301 0.28293 81.301 81.087 81.37 0 20 13 2 0 0 0 0.46577 1 45070 45070 9.3474 1.4373 1 785380 + 1252 24628 893 902 1368 1368 0.012543304864720994 ALGMMAPL 8 Unmodified _ALGMMAPL_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MSMS AL20221201_MKP_PDAC_01 4 402.2125244140625 2 402.211335 802.408117 NaN NaN NaN NaN NaN NaN NaN 22.15 1 19.415 18.915 19.915 -2.7348 0 0 0 0.9706 1 11903 11903 6.3541 3.4649 1 + 1253 19749 894 903 1369 1369 -0.0009907231250281257 ALGNETLPP 9 Unmodified _ALGNETLPP_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG;nc|ENSG00000188162|Q6ZRI0-2|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2447204589844 2 456.245275 910.475997 1.3791 0.00062923 0.18592 8.4825E-05 1.5651 0.00071405 456.2451006061285 34.029 0.39526 30.044 29.842 30.238 -3.9853 33 21 2 0 0 0 0.08691 1 19534 19534 36.127 2.0246 1 8995700 1254 9633 895 904 1370 1370 0.017177921435177268 ALGPTGRGV 9 Unmodified _ALGPTGRGV_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2397155761719 2 414.240327 826.466101 -0.46922 -0.00019437 0.17179 7.1161E-05 -0.29744 -0.00012321 414.2404350051162 24.638 0.20823 24.638 24.531 24.739 0 22 12 3 0 0 0 0.38785 1 12596 12596 13.042 2.2185 1 971610 1255 1848 896 905 1371 1371 0.04592648928814924 ALGPTGRGV 9 Unmodified _ALGPTGRGV_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2406005859375 2 414.240327 826.466101 0.69292 0.00028703 0.11892 4.9262E-05 0.81184 0.0003363 414.2401478864123 28.091 0.34628 24.943 24.731 25.077 -3.1482 33 18 3 0 0 0 0.06294 1 15578 15578 41.84 1.8823 1 13760000 1256 1848 896 905 1372 1372 0.04592648928814924 ALGQRHLA 8 Unmodified _ALGQRHLA_ 0 0 0 REV__ENST00000578423.1_1_17:37213316-37264034:+|nuORF REV__ENST00000578423.1_1_17:37213316-37264034:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.253662109375 2 433.253769 864.492984 0.54434 0.00023584 0.071048 3.0782E-05 0.61539 0.00026662 433.2537607230346 27.964 0.53043 24.815 24.547 25.077 -3.1482 90 28 4 0 0 0 0.61462 2 15431 15431;15670 24.674 18.135 1 207640000 + 1257 29042 897 906 1373;1374 1373 0.05531757539972659 ALGRGPRGV 9 Unmodified _ALGRGPRGV_ 0 0 0 ENST00000443120.5_1_2:97506274-97506418:-|nuORF ENST00000443120.5_1_2:97506274-97506418:-|nuORF ENST00000443120.5_1_2:97506274-97506418:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2892761230469 2 441.767043 881.519533 0.062752 2.7722E-05 0.16763 7.4052E-05 0.23038 0.00010177 441.7669611319193 36.465 0.24118 36.486 36.295 36.536 0.021545 17 10 2 0 0 0 0.1474 1 19335 19335 28.487 3.813 1 2575200 1258 13418 898 907 1375 1375 0.07403446431328575 ALGRSLSGTS 10 Unmodified _ALGRSLSGTS_ 0 0 0 REV__ENST00000263563.6_1_10:72238592-72285689:+|nuORF REV__ENST00000263563.6_1_10:72238592-72285689:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7590026855469 2 474.759081 947.503609 0.2756 0.00013084 -0.17851 -8.4749E-05 0.097086 4.6092E-05 474.7589758227952 39.714 0.39162 39.719 39.503 39.894 0.0050583 37 18 3 0 0 0 0.70151 1 21119 21119 2.7352 2.7352 1 4478200 + 1259 25049 899 908 1376 1376 0.027756954037613468 ALGVMDKSTAI 11 Unmodified _ALGVMDKSTAI_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.802001953125 2 553.299724 1104.5849 0.5514 0.00030509 -0.97944 -0.00054193 -0.42805 -0.00023684 553.7993040314814 95.824 0.30917 95.456 95.287 95.596 -0.36815 38 18 3 0 0 0 0.67922 1 52285 52285 6.2058 1.8765 1 580930 1260 8142 900 909 1377 1377 0.0367863505148307 ALGYGWNFEH 10 Unmodified _ALGYGWNFEH_ 0 0 0 REV__ENSG00000147027|ENST00000275954|TMEM47 REV__ENSG00000147027|ENST00000275954|TMEM47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5180358886719 3 398.517329 1192.53016 NaN NaN NaN NaN NaN NaN NaN 19.744 1 19.751 19.251 20.251 0.0078487 0 0 0 0.98692 1 10052 10052 2.086 0.34373 1 + 1261 20859 901 910 1378 1378 -0.05840615704914853 ALHAKPNG 8 Unmodified _ALHAKPNG_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3;ENST00000515333.1_1_6:83900509-83900731:-|nuORF ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.227783203125 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 23.2 1 23.217 22.717 23.717 0.01749 0 0 0 0.95201 1 11942 11942 10.183 4.9527 1 1262 473 902 911 1379 1379 0.02892379757327035 ALHCNKYWWG 10 Unmodified _ALHCNKYWWG_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.1893005371094 3 426.534326 1276.58115 -0.50652 -0.00021605 0.28051 0.00011965 -0.22601 -9.6402E-05 426.5343585574264 18.08 0.11861 18.08 18.025 18.143 0 20 9 3 0 0 0 0.72196 1 8944 8944 0.15932 0 1 1710500 + 1263 19239 903 912 1380 1380 -0.04607989931719203 ALHCNKYWWG 10 Unmodified _ALHCNKYWWG_ 0 0 0 REV__ENSG00000120332|ENST00000239462|TNN REV__ENSG00000120332|ENST00000239462|TNN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 426.534326 1276.58115 -0.56805 -0.00024229 -0.8358 -0.0003565 -1.4039 -0.00059879 426.534093657888 18.003 0.08305 18.017 17.979 18.062 0.013865 -0.031394 -0.000474 NaN 0.15932 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3096800 + 1264 19239 903 912 -0.04607989931719203 ALHDILTEI 9 Unmodified _ALHDILTEI_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7830810546875 2 512.787307 1023.56006 -0.22896 -0.00011741 -2.4454 -0.001254 -2.6744 -0.0013714 512.7861482715973 69.732 0.29255 69.253 69.109 69.401 -0.47903 30 12 3 0 0 0 0.41742 1 38098 38098 11.64 5.2862 1 1519500 1265 2790 904 913 1381 1381 0.04922323240418791 ALHDQLFYL 9 Unmodified _ALHDQLFYL_ 0 0 0 ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L ENST00000503240.5_1_5:148743537-148748214:+|nuORF ENST00000503240.5_1_5:148743537-148748214:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8030395507812 2 560.295299 1118.57605 0.87058 0.00048778 0.55307 0.00030988 1.4236 0.00079766 560.2950900637692 73.225 0.37406 72.749 72.497 72.871 -0.47588 33 16 3 0 0 0 0.28023 1 40021 40021 18.146 5.6148 1 3028800 1266 5736 905 914 1382 1382 0.02150029477343196 ALHEIQNLTL 10 Unmodified _ALHEIQNLTL_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3251953125 2 576.324588 1150.63462 0.74875 0.00043152 0.058885 3.3937E-05 0.80764 0.00046546 576.3247402592499 46.902 0.20049 46.565 46.424 46.624 -0.33664 14 9 2 0 0 0 0.24625 1 25136 25136 30.637 3.0077 1 2312300 1267 403 906 915 1383 1383 0.06533086051786086 ALHERKFAY 9 Unmodified _ALHERKFAY_ 0 0 0 REV__CD80|p.D124Y|1|0.19|ENSG00000121594|chr3:119544598-119544598|C/A|missense_variant REV__CD80|p.D124Y|1|0.19|ENSG00000121594|chr3:119544598-119544598|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8062133789062 2 567.806365 1133.59818 -0.38359 -0.0002178 1.0448 0.00059323 0.66119 0.00037543 567.8064451925749 48.65 0.47787 48.65 48.351 48.828 0 61 22 3 0 0 0 0.12424 1 26599 26599 30.637 8.8899 1 33728000 + 1268 16759 907 916 1384 1384 0.03672253945751436 ALHGPKFSVP 10 Unmodified _ALHGPKFSVP_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.79833984375 2 526.798009 1051.58147 1.1817 0.00062249 -0.55239 -0.000291 0.62926 0.00033149 526.797708633879 49.946 0.36372 49.897 49.723 50.087 -0.048828 50 16 4 0 0 0 0.50944 1 27060 27060 15.847 0 1 16936000 + 1269 22717 908 917 1385 1385 0.05773753059793307 ALHHAVIFL 9 Unmodified _ALHHAVIFL_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.803466796875 2 510.803094 1019.59164 0.29711 0.00015177 0.026302 1.3435E-05 0.32341 0.0001652 510.8030305648895 53.294 0.36193 53.231 53.061 53.423 -0.063423 49 17 4 0 0 0 0.047696 2 28840 28840;28938 45.75 15.525 1 30275000 1270 1687 909 918 1386;1387 1386 0.08262360785033707 ALHIVPTYL 9 Unmodified _ALHIVPTYL_ 0 0 0 REV__ENSG00000164073|ENST00000641686|MFSD8 REV__ENSG00000164073|ENST00000641686|MFSD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.784423828125 2 513.80276 1025.59097 0.29436 0.00015124 0.33011 0.00016961 0.62447 0.00032085 513.8027300630724 68.632 0.31837 68.151 67.99 68.309 -0.48071 38 14 4 0 0 0 0.25297 1 37462 37462 19.439 3.5918 1 8396900 + 1271 21860 910 919 1388 1388 0.07919521345297653 ALHPSHPDP 9 Unmodified _ALHPSHPDP_ 0 0 0 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.486572265625 1 970.474106 969.466829 0.41036 0.00039824 -0.56298 -0.00054636 -0.15262 -0.00014812 970.4739106125032 53.306 0.48579 53.306 53.08 53.566 0 51 21 4 0 0 0 0.047196 1 29630 29630 46.021 11.919 1 31060000 1272 6219 911 920 1389 1389 -0.019125564221440072 ALHRKLLID 9 Unmodified _ALHRKLLID_ 0 0 0 ENST00000562866.1_1_16:89783858-89784437:+|nuORF ENST00000562866.1_1_16:89783858-89784437:+|nuORF ENST00000562866.1_1_16:89783858-89784437:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5628356933594 3 360.229231 1077.66586 -0.26204 -9.4393E-05 2.2431 0.00080803 1.9811 0.00071364 360.5630695944073 37.127 0.47825 37.149 36.942 37.42 0.021545 65 21 4 0 0 0 0.60485 1 19661 19661 1.0715 0 1 11706000 1273 15347 912 921 1390 1390 0.13013703876572436 ALHTLGALI 9 Unmodified _ALHTLGALI_ 0 0 0 REV__ENSG00000146205|ENST00000674324|ANO7 REV__ENSG00000146205|ENST00000674324|ANO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.7818298339844 2 454.781828 907.549102 0.49297 0.00022419 0.28389 0.00012911 0.77686 0.0003533 454.7819650316963 64.519 0.21846 64.034 63.929 64.147 -0.48512 17 9 2 0 0 0 0.28047 1 35181 35181 18.135 0 1 881510 + 1274 20817 913 922 1391 1391 0.09162965656810229 ALHVAVRLC 9 Unmodified _ALHVAVRLC_ 0 0 0 REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC REV__nc|ENSG00000288550|Q8NAC3-4|IL17RC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7657470703125 2 491.286754 980.558955 0.66377 0.0003261 -1.0359 -0.00050892 -0.37213 -0.00018282 491.2860604861509 49.148 0.23117 49.104 48.964 49.195 -0.04369 16 10 2 0 0 0 0.20528 1 26586 26586 8.5933 0 1 1391600 + 1275 21804 914 923 1392 1392 0.06789830390539464 ALHVDKPWHSC 11 Unmodified _ALHVDKPWHSC_ 0 0 0 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.8155517578125 2 646.813864 1291.61318 0.20699 0.00013389 1.0881 0.0007038 1.2951 0.00083769 646.815104992799 74.475 0.28974 74.475 74.271 74.56 0 20 12 2 0 0 0 0.71036 1 41408 41408 3.2813 1.4371 1 881670 + 1276 22331 915 924 1393 1393 -0.0209662224854128 ALHWVAETL 9 Unmodified _ALHWVAETL_ 0 0 0 ENSG00000131067|ENST00000336431|GGT7 ENSG00000131067|ENST00000336431|GGT7 ENSG00000131067|ENST00000336431|GGT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.283447265625 2 520.282192 1038.54983 0.70218 0.00036533 -0.33771 -0.0001757 0.36447 0.00018963 520.2820315057562 52.595 0.53676 52.536 52.368 52.905 -0.058918 99 26 5 0 0 0 0.28047 1 28649 28649 18.135 3.5533 1 170300000 1277 4294 916 925 1394 1394 0.032097603058673485 ALHYAVPGY 9 Unmodified _ALHYAVPGY_ 0 0 0 REV__nc|ENSG00000101276|Q9NQ40-2|SLC52A3 REV__nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2582702636719 2 495.75581 989.497067 0.079747 3.9535E-05 -2.2605 -0.0011206 -2.1807 -0.0010811 495.75376729397806 31.588 0.38028 31.588 31.398 31.778 0 73 18 5 0 0 0 0.22317 1 16507 16507 20.871 3.7583 1 43108000 + 1278 18153 917 926 1395 1395 0.0018980224303959403 ALIAALRTL 9 Unmodified _ALIAALRTL_ 0 0 0 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.3111267089844 2 471.310752 940.606951 0.10177 4.7963E-05 -0.26798 -0.0001263 -0.16622 -7.8339E-05 471.31042529134345 75.552 0.41011 75.599 75.454 75.864 0.047943 47 18 3 0 0 0 0.0086722 1 41634 41634 88.954 3.3123 1 11003000 + 1279 29746 918 927 1396 1396 0.13427227582246815 ALIDRMVNL 9 Oxidation (M) _ALIDRM(Oxidation (M))VNL_ ALIDRM(1)VNL ALIDRM(52)VNL 0 0 1 ENSG00000175197|ENST00000346473|DDIT3;nc|ENSG00000285133|P35638-2|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 ENSG00000175197|ENST00000346473|DDIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7960815429688 2 530.794609 1059.57467 0.25096 0.00013321 1.4491 0.00076917 1.7001 0.00090238 530.7956466273853 48.94 0.32835 48.568 48.427 48.755 -0.37172 29 16 2 0 0 0 0.036857 1 26307 26307 51.63 13.479 1 2743200 1280 8492 919 928 1397 1397 1442 0.047260721169323006 ALIEAEKVAQV 11 Unmodified _ALIEAEKVAQV_ 0 0 0 ENSG00000147475|ENST00000519638|ERLIN2 ENSG00000147475|ENST00000519638|ERLIN2 ENSG00000147475|ENST00000519638|ERLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8412475585938 2 585.840071 1169.66559 0.35173 0.00020606 1.3364 0.00078294 1.6882 0.000989 585.8407606368218 47.374 0.18147 47.374 47.269 47.45 0 13 7 2 0 0 0 0.11513 1 25929 25929 40.725 13.096 1 2690800 1281 5856 920 929 1398 1398 0.08754239366044203 ALIEDEHNL 9 Unmodified _ALIEDEHNL_ 0 0 0 nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14 nc|ENSG00000175455|Q49A88-5|CCDC14 nc|ENSG00000175455|Q49A88-5|CCDC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2636108398438 2 527.264196 1052.51384 0.79947 0.00042153 -0.44309 -0.00023363 0.35638 0.00018791 527.2635569668255 38.705 0.23405 38.705 38.556 38.79 0 20 10 3 0 0 0 0.015445 1 20691 20691 68.081 28.123 1 1973500 1282 8518 921 930 1399 1399 -0.01031741661677188 ALIEGVGILL 10 Unmodified _ALIEGVGILL_ 0 0 0 nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.6285400390625 1 997.629209 996.621933 1.1779 0.0011751 -0.34592 -0.0003451 0.83194 0.00082996 997.6287126914043 101.07 0.1084 94.899 94.831 94.939 -6.1757 13 5 3 0 0 0 0.0093317 1 67732 67732 88.904 3.5469 1 33766000 1283 16174 922 931 1400 1400 0.12348674659574499 ALIEKLVEL 9 Unmodified _ALIEKLVEL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.3241577148438 2 514.323525 1026.6325 0.53694 0.00027616 0.38513 0.00019808 0.92207 0.00047424 514.3236166817874 74.019 0.38013 74.019 73.83 74.21 0 41 17 3 0 0 0 0.010611 1 41179 41179 78.728 20.049 1 3251000 1284 484 923 932 1401 1401 0.12024657313986609 ALIEKLVEL 9 Unmodified _ALIEKLVEL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.32373046875 2 514.323525 1026.6325 0.65122 0.00033494 -0.25536 -0.00013134 0.39586 0.0002036 514.3233751887899 74.419 0.59317 73.943 73.638 74.231 -0.47588 67 24 4 0 0 0 0.010611 2 40781 40674;40781 78.728 20.049 1 20290000 1285 484 923 932 1402;1403 1403 0.12024657313986609 ALIEKLVEL 9 Unmodified _ALIEKLVEL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.324951171875 2 514.323525 1026.6325 1.1173 0.00057467 1.3467 0.00069265 2.464 0.0012673 514.3242922466465 96.043 0.32731 89.867 89.714 90.041 -6.1757 61 19 4 0 0 0 0.0094097 2 63594 63594;63727 82.529 19.957 1 206840000 1286 484 923 932 1404;1405 1404 0.12024657313986609 ALIEQKVEL 9 Unmodified _ALIEQKVEL_ 0 0 0 nc|ENSG00000188026|Q5EBL4-3|RILPL1;ENST00000340724.6_2_12:123957087-123997908:-|nuORF;nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1 nc|ENSG00000188026|Q5EBL4-3|RILPL1 nc|ENSG00000188026|Q5EBL4-3|RILPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.8110961914062 2 521.810782 1041.60701 0.64788 0.00033807 -0.75229 -0.00039255 -0.10441 -5.448E-05 521.8103114100968 50.733 0.27507 50.733 50.582 50.857 0 29 16 2 0 0 0 0.010301 1 27953 27953 79.596 13.14 1 16135000 1287 9617 924 933 1406 1406 0.0878718279154782 ALIEVLQPL 9 Unmodified _ALIEVLQPL_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.3106994628906 2 498.310418 994.606283 NaN NaN NaN NaN NaN NaN NaN 89.997 1 89.495 88.995 89.995 -0.50171 0 0 0 0.57317 1 49198 49198 13.508 5.5977 1 1288 5208 925 934 1407 1407 0.1087638814251477 ALIEVLQPLI 10 Unmodified _ALIEVLQPLI_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8521118164062 2 554.85245 1107.69035 0.54246 0.00030099 -0.64047 -0.00035537 -0.098004 -5.4378E-05 554.8519419055236 100.51 0.087524 100.38 100.32 100.41 -0.13293 6 3 2 0 0 0 0.55245 1 54878 54878 21.747 11.673 1 2353700 1289 5208 926 935 1408 1408 0.14080919239427203 ALIEVLQPLI 10 Unmodified _ALIEVLQPLI_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8536987304688 2 554.85245 1107.69035 1.024 0.00056818 0.50337 0.0002793 1.5274 0.00084748 554.852533475509 101.33 0.11936 95.154 95.091 95.211 -6.1757 17 6 4 0 0 0 0.10406 1 67964 67964 64.236 22.397 1 80393000 1290 5208 926 935 1409 1409 0.14080919239427203 ALIEVLQPLI 10 Unmodified _ALIEVLQPLI_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.85245 1107.69035 1.443 0.00080066 -1.3737 -0.0007622 0.069314 3.8459E-05 554.8514809726037 100.45 0.1083 100.42 100.35 100.46 -0.036301 0.020216 -0.00044662 NaN 21.747 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3113700 1291 5208 926 935 0.14080919239427203 ALIEVPDGFTA 11 Unmodified _ALIEVPDGFTA_ 0 0 0 ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP ENST00000478617.5_1_1:201952590-201969135:+|nuORF ENST00000478617.5_1_1:201952590-201969135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7980346679688 2 566.797872 1131.58119 0.3112 0.00017639 0.37957 0.00021514 0.69077 0.00039153 566.798582621822 78.536 0.26036 78.536 78.379 78.64 0 20 12 2 0 0 0 0.35243 1 43616 43616 24.021 13.197 1 627800 1292 8588 927 936 1410 1410 0.02066288549303863 ALIEVPDGFTA 11 Unmodified _ALIEVPDGFTA_ 0 0 0 ENST00000478617.5_1_1:201952590-201969135:+|nuORF;ENSG00000176393|ENST00000295640|RNPEP ENST00000478617.5_1_1:201952590-201969135:+|nuORF ENST00000478617.5_1_1:201952590-201969135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7987060546875 2 566.797872 1131.58119 0.58776 0.00033314 0.58394 0.00033098 1.1717 0.00066412 566.7990189431049 79.053 0.33995 78.567 78.436 78.776 -0.48596 34 14 3 0 0 0 0.25654 1 43266 43266 29.082 14.243 1 1147900 1293 8588 927 936 1411 1411 0.02066288549303863 ALIKMLPRLKL 11 Unmodified _ALIKMLPRLKL_ 0 0 0 REV__nc|ENSG00000067057|Q01813-2|PFKP REV__nc|ENSG00000067057|Q01813-2|PFKP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.4329833984375 2 648.433418 1294.85228 NaN NaN NaN NaN NaN NaN NaN 103.7 1 103.65 103.15 104.15 -0.047928 0 0 0 0.9435 1 57586 57586 0 0 1 + 1294 17412 928 937 1412 1412 0.2166518472070038 ALILEKVGSY 10 Unmodified _ALILEKVGSY_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2979125976562 2 546.818607 1091.62266 -0.069239 -3.7861E-05 4.0405 0.0022094 3.9713 0.0021716 546.8205377641965 69.203 0.24603 68.723 68.627 68.873 -0.48071 17 10 2 0 0 0 0.23634 1 37789 37789 6.7232 1.4925 1 621420 + 1295 21948 929 938 1413 1413 0.08051469308611559 ALINVPPP 8 Unmodified _ALINVPPP_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000461328.1_1_6:31750434-31752201:-|nuORF ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.7488403320312 2 410.749996 819.485439 -0.10849 -4.4563E-05 -2.5128 -0.0010321 -2.6213 -0.0010767 410.7488406838239 19.283 0.07951 19.291 19.24 19.319 0.0078487 5 3 2 0 0 0 0.78849 1 9807 9807 9.3474 0 1 411240 1296 10278 930 939 1414 1414 0.06847605219695652 ALINVPPP 8 Unmodified _ALINVPPP_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;ENST00000461328.1_1_6:31750434-31752201:-|nuORF ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 410.749996 819.485439 0.73429 0.00030161 -3.0255 -0.0012427 -2.2912 -0.00094111 410.74878934490937 22.431 0.25529 19.652 19.498 19.753 -2.7784 0.18059 -8.1699E-05 NaN 9.3474 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3212500 1297 10278 930 939 0.06847605219695652 ALIQQATTV 9 Unmodified _ALIQQATTV_ 0 0 0 ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000475906.1_1_14:35732014-35732239:+|nuORF;ENST00000511643.5_1_4:39456165-39456631:-|nuORF;ENST00000561773.1_1_15:66671752-66672088:-|nuORF ENST00000439124.1_1_6:64325734-64326112:-|nuORF ENST00000439124.1_1_6:64325734-64326112:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7741088867188 2 472.7742 943.533846 NaN NaN NaN NaN NaN NaN NaN 45.104 1 45.104 44.604 45.604 0 0 0 0 0.40995 1 24568 24568 19.439 4.8573 1 1298 7047 931 940 1415 1415 0.05982054068931575 ALISDQWVL 9 Unmodified _ALISDQWVL_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7904663085938 2 522.78985 1043.56515 0.35499 0.00018559 0.14331 7.492E-05 0.4983 0.00026051 522.789915485105 89.573 0.32797 89.071 88.889 89.217 -0.50172 25 13 2 0 0 0 0.16226 1 48969 48969 26.884 13.376 1 1588700 1299 7465 932 941 1416 1416 0.04510627103036313 ALISGIEAQL 10 Unmodified _ALISGIEAQL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7953796386719 2 507.795132 1013.57571 0.575 0.00029198 -0.12129 -6.1591E-05 0.4537 0.00023039 507.79506851611626 74.748 0.56286 74.748 74.497 75.06 0 79 27 5 0 0 0 0.017277 1 41626 41626 78.149 14.189 1 27058000 + 1300 167 933 942 1417 1417 0.06946609757460465 ALISGIEAQL 10 Unmodified _ALISGIEAQL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7955932617188 2 507.795132 1013.57571 0.44648 0.00022672 0.47476 0.00024108 0.92124 0.0004678 507.7952457100685 74.694 0.34743 74.74 74.573 74.92 0.045959 28 15 2 0 0 0 0.043729 1 41237 41237 61.357 3.6355 1 8432900 + 1301 167 933 942 1418 1418 0.06946609757460465 ALISGIEAQL 10 Unmodified _ALISGIEAQL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7956237792969 2 507.795132 1013.57571 0.88008 0.0004469 -0.13192 -6.6986E-05 0.74816 0.00037991 507.79506127616867 83.602 1.8176 77.426 76.747 78.564 -6.1757 281 99 5 0 0 0 0.017277 3 55098 54842;54972;55098 78.149 5.1815 1 286790000 + 1302 167 933 942 1419;1420;1421 1421 0.06946609757460465 ALITLAPTLI 10 Unmodified _ALITLAPTLI_ 0 0 0 REV__nc|ENSG00000181214|Q6IF36|OR8G2P REV__nc|ENSG00000181214|Q6IF36|OR8G2P MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.777587890625 2 513.333893 1024.65323 0.46469 0.00023854 2.1677 0.0011128 2.6324 0.0013513 513.3353044189272 93.56 0.36197 87.385 87.285 87.647 -6.1757 28 21 2 0 0 0 0.23566 1 61902 61902 7.2892 2.0586 1 11457000 + 1303 29826 934 943 1422 1422 0.14189247693661855 ALITPFIAQV 10 Unmodified _ALITPFIAQV_ 0 0 0 ENSG00000166111|ENST00000610966|SVOP ENSG00000166111|ENST00000610966|SVOP ENSG00000166111|ENST00000610966|SVOP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2167663574219 3 358.21822 1071.63283 NaN NaN NaN NaN NaN NaN NaN 22.385 1 22.402 21.902 22.902 0.01749 0 0 0 0.94985 1 11495 11495 5.7834 2.1964 1 1304 7431 935 944 1423 1423 0.09988077033835907 ALITTILHL 9 Unmodified _ALITTILHL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3199768066406 2 497.81841 993.622267 0.40878 0.0002035 0.63407 0.00031565 1.0428 0.00051915 497.8187944186173 89.398 0.27888 89.446 89.289 89.568 0.047852 16 9 2 0 0 0 0.016494 1 49742 49742 67.035 0 1 17743000 1305 7181 936 945 1424 1424 0.12520094379431157 ALITTILHL 9 Unmodified _ALITTILHL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8195190429688 2 497.81841 993.622267 0.41533 0.00020676 -0.14367 -7.152E-05 0.27167 0.00013524 497.81893679621174 99.751 0.12988 93.575 93.508 93.638 -6.1757 15 8 3 0 0 0 0.010712 1 66518 66518 78.445 0 1 93733000 1306 7181 936 945 1425 1425 0.12520094379431157 ALKADFEL 8 Unmodified _ALKADFEL_ 0 0 0 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4913940429688 1 906.49311 905.485833 0.055338 5.0164E-05 1.5819 0.001434 1.6372 0.0014841 906.4945640242745 79.739 0.34117 79.739 79.546 79.887 0 21 14 2 0 0 0 0.77907 1 44254 44254 10.183 0 1 461970 + 1307 24083 937 946 1426 1426 0.029309801489034726 ALKADFEL 8 Unmodified _ALKADFEL_ 0 0 0 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4962158203125 1 906.49311 905.485833 0.44619 0.00040447 1.181 0.0010706 1.6272 0.0014751 906.4942861866097 80.213 0.62238 79.724 79.507 80.129 -0.48932 49 24 3 0 0 0 0.80143 1 44050 44050 5.7604 0 1 3186400 + 1308 24083 937 946 1427 1427 0.029309801489034726 ALKADFEL 8 Unmodified _ALKADFEL_ 0 0 0 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7508544921875 2 453.750193 905.485833 1.098 0.0004982 -0.09552 -4.3342E-05 1.0024 0.00045486 453.7501881723492 87.448 0.45879 81.272 81.036 81.495 -6.1757 56 24 3 0 0 0 0.5953 1 57680 57680 26.341 0 1 44187000 + 1309 24083 937 946 1428 1428 0.029309801489034726 ALKALSDRF 9 Unmodified _ALKALSDRF_ 0 0 0 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7949523925781 2 510.795466 1019.57638 NaN NaN NaN NaN NaN NaN NaN 61.094 1 60.605 60.105 61.105 -0.48932 0 0 0 0.6032 1 33274 33274 12.532 0.89125 1 1310 7397 938 947 1429 1429 0.06737449197191836 ALKCPPSP 8 Unmodified _ALKCPPSP_ 0 0 0 nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7188720703125 2 406.720381 811.42621 NaN NaN NaN NaN NaN NaN NaN 65.797 1 65.797 65.297 66.297 0 0 0 0 0.96606 1 36697 36697 7.2892 2.0586 1 1311 4683 939 948 1430 1430 0.012953859338722395 ALKCPPSP 8 Unmodified _ALKCPPSP_ 0 0 0 nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.718017578125 2 406.720381 811.42621 NaN NaN NaN NaN NaN NaN NaN 66.343 1 65.86 65.36 66.36 -0.48323 0 0 0 0.96606 1 36225 36225 7.2892 2.0586 1 1312 4683 939 948 1431 1431 0.012953859338722395 ALKEKLML 8 Unmodified _ALKEKLML_ 0 0 0 REV__ENSG00000124201|ENST00000396105|ZNFX1 REV__ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2940063476562 2 473.293714 944.572874 1.1625 0.00055019 0.35591 0.00016845 1.5184 0.00071864 473.29391654459374 97.935 0.16338 91.76 91.668 91.831 -6.1757 17 9 3 0 0 0 0.38465 1 64921 64921 46.021 2.1627 1 16144000 + 1313 19427 940 949 1432 1432 0.09837063098962062 ALKERQWSDAF 11 Unmodified _ALKERQWSDAF_ 0 0 0 REV__nc|ENSG00000123444|Q9NVX7-3|KBTBD4 REV__nc|ENSG00000123444|Q9NVX7-3|KBTBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.8994140625 3 450.89821 1349.6728 1.3628 0.00061448 1.165 0.00052529 2.5278 0.0011398 450.8990557981739 37.217 0.1989 32.934 32.857 33.056 -4.2835 20 11 2 0 0 0 0.56638 1 21853 21853 7.0371 2.6309 1 5148800 + 1314 29611 941 950 1433 1433 0.011949719664926306 ALKIAWYK 8 Unmodified _ALKIAWYK_ 0 0 0 REV__nc|ENSG00000156261|P50990-3|CCT8 REV__nc|ENSG00000156261|P50990-3|CCT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.800048828125 2 496.80002 991.585488 NaN NaN NaN NaN NaN NaN NaN 16.57 1 16.575 16.075 17.075 0.0050564 0 0 0 0.97444 1 8315 8315 0.69038 0.088878 1 + 1315 21324 942 951 1434 1434 0.0893584255351243 ALKKPFAA 8 Unmodified _ALKKPFAA_ 0 0 0 REV__ENSG00000265808|ENST00000578049|SEC22B REV__ENSG00000265808|ENST00000578049|SEC22B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2643127441406 2 423.265813 844.517074 NaN NaN NaN NaN NaN NaN NaN 106.17 1 106.12 105.62 106.62 -0.048103 0 0 0 0.97444 1 58855 58855 0.79363 0 1 + 1316 24604 943 952 1435 1435 0.08859597973651034 ALKLAAKRFIF 11 Unmodified _ALKLAAKRFIF_ 0 0 0 ENSG00000176714|ENST00000324364|CCDC121;nc|ENSG00000176714|Q6ZUS5-2|CCDC121 ENSG00000176714|ENST00000324364|CCDC121 ENSG00000176714|ENST00000324364|CCDC121 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.4092407226562 2 639.408258 1276.80196 1.1271 0.0007207 1.0736 0.00068645 2.2007 0.0014071 639.4090007568145 88.162 0.56303 81.986 81.729 82.292 -6.1757 50 31 2 0 0 0 0.46578 3 58157 58030;58157;58298 18.146 10.236 1 12548000 1317 8616 944 953 1436;1437;1438 1437 0.17463398387212692 ALKNINYLL 9 Unmodified _ALKNINYLL_ 0 0 0 ENST00000475659.1_1_1:197237491-197326220:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-3|CRB1;nc|ENSG00000134376|P82279-2|CRB1;ENSG00000134376|ENST00000367400|CRB1 ENST00000475659.1_1_1:197237491-197326220:+|nuORF ENST00000475659.1_1_1:197237491-197326220:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.320556640625 2 531.321317 1060.62808 1.2558 0.00066721 -2.6549 -0.0014106 -1.3991 -0.00074337 531.319687572767 94.308 0.21017 88.132 87.976 88.186 -6.1757 16 11 2 0 0 0 0.28047 1 62446 62446 18.135 4.2289 1 4956000 1318 4603 945 954 1439 1439 0.10019192891104467 ALKQGGTG 8 Unmodified _ALKQGGTG_ 0 0 0 REV__ENSG00000181652|ENST00000639579|ATG9B REV__ENSG00000181652|ENST00000639579|ATG9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2069091796875 2 366.205953 730.397353 1.0167 0.00037234 2.5714 0.00094165 3.5881 0.001314 366.20672517751507 71.265 0.33923 71.304 71.068 71.407 0.039024 29 14 3 0 0 0 0.81107 1 39236 39236 0 0 1 904390 + 1319 23217 946 955 1440 1440 0.021369846291122485 ALKQGGTG 8 Unmodified _ALKQGGTG_ 0 0 0 REV__ENSG00000181652|ENST00000639579|ATG9B REV__ENSG00000181652|ENST00000639579|ATG9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8069152832031 2 366.205953 730.397353 0.4574 0.0001675 1.3627 0.00049905 1.8201 0.00066655 366.2062527713797 69.168 0.15627 69.199 69.093 69.249 0.030914 15 7 3 0 0 0 8.7369 1 37984 37984 0 0 1 698490 + 1320 23217 946 955 1441 1441 0.021369846291122485 ALKSEELDI 9 Unmodified _ALKSEELDI_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2763366699219 2 509.276772 1016.53899 0.30452 0.00015509 -0.22331 -0.00011373 0.081209 4.1358E-05 509.2765801417082 62.594 0.3679 62.594 62.432 62.8 0 40 17 3 0 0 0 0.49272 1 35021 35021 7.9102 0.62092 1 6830900 1321 7184 947 956 1442 1442 0.031383131409029374 ALKTTVPAL 9 Unmodified _ALKTTVPAL_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2904052734375 2 457.289485 912.564418 0.19214 8.7863E-05 1.4084 0.00064403 1.6005 0.00073189 457.29029206141485 37.766 0.24573 37.783 37.614 37.859 0.01704 23 11 3 0 0 0 0.51218 1 20034 20034 6.7232 0.51738 1 2632900 1322 4816 948 957 1443 1443 0.10463832454001931 ALLAANLLF 9 Unmodified _ALLAANLLF_ 0 0 0 ENSG00000116771|ENST00000375826|AGMAT ENSG00000116771|ENST00000375826|AGMAT ENSG00000116771|ENST00000375826|AGMAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 945.579345703125 1 945.57678 944.569503 0.29084 0.00027501 1.3023 0.0012315 1.5932 0.0015065 945.5778835616867 101.47 0.078079 95.298 95.252 95.33 -6.1757 6 3 2 0 0 0 0.016494 1 68088 68088 67.035 0 1 7576100 1323 3254 949 958 1444 1444 0.09500136316603403 ALLADEFAL 9 Unmodified _ALLADEFAL_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7640075683594 2 481.7633 961.512048 NaN NaN NaN NaN NaN NaN NaN 87.145 1 87.145 86.645 87.645 0 0 0 0 0.40995 1 48261 48261 19.439 8.3245 1 1324 9713 950 959 1445 1445 0.029752493203773156 ALLADEFAL 9 Unmodified _ALLADEFAL_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MSMS AL20221201_MKP_PDAC_01 4 481.7637634277344 2 481.7633 961.512048 NaN NaN NaN NaN NaN NaN NaN 98.265 1 92.089 91.589 92.589 -6.1757 0 0 0 0.052454 1 65160 65160 56.541 20.497 1 1325 9713 950 959 1446 1446 0.029752493203773156 ALLALLPEL 9 Unmodified _ALLALLPEL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.8076171875 2 476.807511 951.600469 0.69929 0.00033343 -1.1687 -0.00055723 -0.46938 -0.00022381 476.80695042742127 101.76 0.093956 95.587 95.524 95.618 -6.1757 11 7 2 0 0 0 0.010712 1 68306 68306 78.445 31.524 1 37305000 1326 3894 951 960 1447 1447 0.12273289630843465 ALLAQTYL 8 Unmodified _ALLAQTYL_ 0 0 0 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 892.5126342773438 1 892.513845 891.506569 -0.42511 -0.00037942 -0.46745 -0.00041721 -0.89257 -0.00079663 892.513409559405 70.476 0.74525 69.998 69.759 70.505 -0.47735 117 51 3 0 0 0 0.5953 1 38680 38680 26.341 1.6674 1 30993000 + 1327 22131 952 961 1448 1448 0.05647570528560664 ALLARFPNL 9 Unmodified _ALLARFPNL_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7831420898438 2 507.808377 1013.6022 -0.068272 -3.4669E-05 4.4824 0.0022762 4.4142 0.0022416 508.3145203040598 51.889 0.056049 51.455 51.418 51.474 -0.43367 4 2 2 0 0 0 0.16785 1 27989 27989 16.942 4.4107 1 499000 1328 4861 953 962 1449 1449 0.09594343439471231 ALLATLAAYL 10 Unmodified _ALLATLAAYL_ 0 0 0 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3111572265625 2 510.310418 1018.60628 0.98519 0.00050275 0.21637 0.00011042 1.2016 0.00061317 510.3102576336269 96.225 0.6588 90.05 89.63 90.289 -6.1757 101 39 5 0 0 0 0.063761 2 63692 63692;63818 54.774 5.2193 1 853710000 + 1329 19583 954 963 1450;1451 1450 0.09772388142516775 ALLAYTLGV 9 Unmodified _ALLAYTLGV_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000553854.1_1_14:82128143-82128728:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5447387695312 1 920.545145 919.537869 0.31572 0.00029063 -0.84907 -0.0007816 -0.53335 -0.00049097 920.5445970817782 82.988 0.2854 82.491 82.357 82.642 -0.49751 19 11 2 0 0 0 0.095049 1 45413 45413 34.187 9.5134 1 958430 1330 1933;6461 955 964 1452 1452 0.07488143562670757 ALLAYTLGV 9 Unmodified _ALLAYTLGV_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000553854.1_1_14:82128143-82128728:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.544921875 1 920.545145 919.537869 0.6839 0.00062956 -0.43736 -0.00040261 0.24654 0.00022695 920.5445391528638 92.438 0.6386 86.262 85.921 86.56 -6.1757 59 38 2 0 0 0 0.010712 3 61048 61048;61175;61302 78.445 18.689 1 14949000 1331 1933;6461 955 964 1453;1454;1455 1453 0.07488143562670757 ALLDCANKV 9 Carbamidomethyl (C) _ALLDC(Carbamidomethyl (C))ANKV_ ALLDC(1)ANKV ALLDC(56)ANKV 0 1 0 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 MSMS AL20221201_MKP_PDAC_01 4 502.2649230957031 2 502.265684 1002.51682 NaN NaN NaN NaN NaN NaN NaN 42.901 1 38.217 37.717 38.717 -4.6846 0 0 0 0.053277 1 25980 25980 56.177 16.227 1 1332 861 956 965 1456 1456 74 0.015658101914937106 ALLDHDLAL 9 Unmodified _ALLDHDLAL_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7745971679688 2 490.7742 979.533846 0.20315 9.9699E-05 0.93771 0.0004602 1.1409 0.0005599 490.77464754724207 63.554 0.20266 63.554 63.482 63.685 0 15 8 2 0 0 0 0.031062 1 35462 35462 54.774 14.816 1 1699100 1333 3869 957 966 1457 1457 0.04326054068940266 ALLDKLYAL 9 Unmodified _ALLDKLYAL_ 0 0 0 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8115234375 2 510.310418 1018.60628 0.42739 0.0002181 -0.19441 -9.9208E-05 0.23298 0.00011889 510.3102882605086 76.338 0.44984 76.386 76.204 76.654 0.047943 59 18 4 0 0 0 0.0082475 2 42075 42075;42175 92.653 11.04 1 102880000 1334 8718 958 967 1458;1459 1458 0.09772388142516775 ALLDNNIGL 9 Unmodified _ALLDNNIGL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7666320800781 2 471.766374 941.518196 0.13938 6.5755E-05 0.59061 0.00027863 0.72999 0.00034438 471.7666071944984 70.323 0.41209 70.323 70.153 70.565 0 53 17 4 0 0 0 0.2143 1 39248 39248 21.747 2.4897 1 5849700 1335 4399 959 968 1460 1460 0.04509767551905952 ALLDNNIGL 9 Unmodified _ALLDNNIGL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2678527832031 2 471.766374 941.518196 0.43995 0.00020756 -0.4471 -0.00021093 -0.0071515 -3.3739E-06 471.7659080515598 70.826 0.31879 70.348 70.186 70.505 -0.47736 41 14 4 0 0 0 0.2143 1 38699 38699 21.747 3.6117 1 3692000 1336 4399 959 968 1461 1461 0.04509767551905952 ALLDNNIGL 9 Unmodified _ALLDNNIGL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7669372558594 2 471.766374 941.518196 1.1237 0.00053011 0.53925 0.0002544 1.6629 0.00078451 471.7663070721327 79.167 0.52344 72.992 72.694 73.218 -6.1757 48 28 2 0 0 0 0.039985 2 51907 51778;51907 49.933 7.9774 1 21083000 1337 4399 959 968 1462;1463 1463 0.04509767551905952 ALLDNNIGL 9 Unmodified _ALLDNNIGL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.766374 941.518196 0.68996 0.0003255 -0.84861 -0.00040035 -0.15865 -7.4845E-05 471.76575377732325 73.162 0.21681 73.162 73.076 73.293 0 0.085367 -0.001117 NaN 49.933 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1134700 1338 4399 959 968 0.04509767551905952 ALLDQFGNHYI 11 Unmodified _ALLDQFGNHYI_ 0 0 0 nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1 nc|ENSG00000152092|O14525-3|ASTN1 nc|ENSG00000152092|O14525-3|ASTN1 MSMS AL20221201_MKP_PDAC_01 4 430.8884887695312 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 26.251 1 23.3 22.8 23.8 -2.9511 0 0 0 0.93613 1 14447 14447 2.4348 0.69251 1 1339 6162 960 969 1464 1464 0.007201845634881465 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2950439453125 2 512.295299 1022.57605 0.38309 0.00019625 0.89868 0.00046039 1.2818 0.00065664 512.2957460127608 66.242 0.19493 66.242 66.153 66.348 0 11 8 2 0 0 0 0.095405 1 36974 36974 34.102 12.356 1 752110 1340 3749 961 970 1465 1465 0.06566029477335178 ALLDQLHTL 9 Unmodified _ALLDQLHTL_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2947998046875 2 512.295299 1022.57605 0.099097 5.0767E-05 0.23126 0.00011847 0.33036 0.00016924 512.2953813922462 66.706 0.33127 66.223 66.046 66.377 -0.48323 36 15 3 0 0 0 0.013323 2 36389 36389;36495 71.134 38.828 1 5866500 1341 3749 961 970 1466;1467 1466 0.06566029477335178 ALLDRIVSV 9 Unmodified _ALLDRIVSV_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.3061218261719 2 493.305667 984.596781 NaN NaN NaN NaN NaN NaN NaN 65.945 1 65.945 65.445 66.445 0 0 0 0 0.23566 1 36781 36781 28.495 3.5035 1 1342 6396 962 971 1468 1468 0.10386619857001733 ALLDRIVSV 9 Unmodified _ALLDRIVSV_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3057861328125 2 493.305667 984.596781 0.68883 0.00033981 -0.52947 -0.00026119 0.15936 7.8615E-05 493.3053062129463 82.764 1.6987 76.588 75.83 77.528 -6.1757 158 93 2 0 0 0 0.0099157 1 54424 54424 80.676 10.344 1 18919000 1343 6396 962 971 1469 1469 0.10386619857001733 ALLDSAHLL 9 Unmodified _ALLDSAHLL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7766723632812 2 476.776742 951.538931 0.28106 0.000134 -0.8676 -0.00041365 -0.58654 -0.00027965 476.7762862535298 65.921 0.35272 65.921 65.738 66.091 0 56 18 4 0 0 0 0.078417 2 36741 36741;36849 38.151 12.09 1 25401000 1344 889;16041 963 972 1470;1471 1470 0.06122357931565148 ALLDSAHLL 9 Unmodified _ALLDSAHLL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.77587890625 2 476.776742 951.538931 0.24084 0.00011483 -0.53058 -0.00025297 -0.28974 -0.00013814 476.7764733239201 66.301 0.39617 65.818 65.608 66.005 -0.48323 52 21 3 0 0 0 0.078417 2 36133 36133;36246 38.151 7.9264 1 30346000 1345 889;16041 963 972 1472;1473 1472 0.06122357931565148 ALLDSAHLL 9 Unmodified _ALLDSAHLL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7771606445312 2 476.776742 951.538931 1.1782 0.00056172 -0.37137 -0.00017706 0.80679 0.00038466 476.7765282419484 71.578 0.62513 65.402 65.189 65.814 -6.1757 65 33 3 0 0 0 0.0081063 3 46694 46694;46823;46980 93.883 40.308 1 86846000 1346 889;16041 963 972 1474;1475;1476 1474 0.06122357931565148 ALLDSAHLL 9 Unmodified _ALLDSAHLL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MSMS AL20221201_MKP_PDAC_01 4 476.7766418457031 2 476.776742 951.538931 NaN NaN NaN NaN NaN NaN NaN 75.397 1 69.221 68.721 69.721 -6.1757 0 0 0 0.20498 1 49306 49306 30.225 12.09 1 1347 889;16041 963 972 1477 1477 0.06122357931565148 ALLDTSMLT 9 Unmodified _ALLDTSMLT_ 0 0 0 REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7558898925781 2 482.754618 963.494683 0.085013 4.104E-05 3.3722 0.0016279 3.4572 0.001669 482.75574914137337 70.32 0.2708 70.32 70.203 70.474 0 17 10 2 0 0 0 0.32871 1 39219 39219 15.847 1.2655 1 596410 + 1348 21916 964 973 1478 1478 0.01147585723060729 ALLEDSCHYL 10 Carbamidomethyl (C) _ALLEDSC(Carbamidomethyl (C))HYL_ ALLEDSC(1)HYL ALLEDSC(78)HYL 0 1 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7841186523438 2 610.784438 1219.55432 0.3603 0.00022006 -0.42703 -0.00026083 -0.066737 -4.0762E-05 610.7844093750001 52.955 0.20325 52.955 52.836 53.039 0 23 9 3 0 0 0 0.017458 1 29326 29326 77.984 51.716 1 2580100 1349 2634 965 974 1479 1479 267 -0.0466714333354048 ALLEDSCHYL 10 Carbamidomethyl (C) _ALLEDSC(Carbamidomethyl (C))HYL_ ALLEDSC(1)HYL ALLEDSC(97)HYL 0 1 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7854614257812 2 610.784438 1219.55432 0.88162 0.00053848 0.04103 2.5061E-05 0.92265 0.00056354 610.7843573049963 60.114 0.34585 54 53.87 54.216 -6.1147 36 17 3 0 0 0 0.0054975 1 38662 38662 97.075 57.125 1 30334000 1350 2634 965 974 1480 1480 267 -0.0466714333354048 ALLEDSCHYL 10 Carbamidomethyl (C) _ALLEDSC(Carbamidomethyl (C))HYL_ 0 1 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 610.784438 1219.55432 0.50291 0.00030717 -0.33761 -0.00020621 0.1653 0.00010096 610.7837739911643 53.51 0.12492 53.059 52.984 53.109 -0.45173 0.051624 7.6366E-05 NaN 77.984 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 675180 1351 2634 965 974 267 -0.0466714333354048 ALLEEHDIF 9 Unmodified _ALLEEHDIF_ 0 0 0 ENSG00000183172|ENST00000331479|SMDT1 ENSG00000183172|ENST00000331479|SMDT1 ENSG00000183172|ENST00000331479|SMDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7767333984375 2 543.776939 1085.53933 0.10236 5.5663E-05 -1.1851 -0.00064442 -1.0827 -0.00058876 543.7766726482753 59.617 0.123 59.126 59.048 59.171 -0.49079 8 5 2 0 0 0 0.39863 1 32434 32434 12.532 0 1 1397200 1352 9124 966 975 1481 1481 -2.2671392343909247E-05 ALLEEVKAL 9 Unmodified _ALLEEVKAL_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.3009033203125 2 493.30005 984.585547 0.49057 0.000242 0.94899 0.00046814 1.4396 0.00071014 493.3004738846047 60.658 0.27338 60.658 60.514 60.788 0 27 11 3 0 0 0 0.05447 1 33849 33849 43.858 5.8843 1 2212400 1353 10211 967 976 1482 1482 0.09263797762855575 ALLEGLLEL 9 Unmodified _ALLEGLLEL_ 0 0 0 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.5825805664062 1 970.581925 969.574648 0.58038 0.00056331 0.28968 0.00028116 0.87006 0.00084447 970.5820097625409 101.52 0.09906 95.34 95.274 95.373 -6.1757 7 4 2 0 0 0 0.0010099 1 68118 68118 139.54 24.6 1 22431000 1354 7848 968 977 1483 1483 0.08864395388559387 ALLEGLLEL 9 Unmodified _ALLEGLLEL_ 0 0 0 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MSMS AL20221201_MKP_PDAC_01 4 485.7955627441406 2 485.794601 969.574648 NaN NaN NaN NaN NaN NaN NaN 101.55 1 95.369 94.869 95.869 -6.1757 0 0 0 0.20498 1 68139 68139 30.225 5.5509 1 1355 7848 968 977 1484 1484 0.08864395388559387 ALLEMDARL 9 Oxidation (M) _ALLEM(Oxidation (M))DARL_ ALLEM(1)DARL ALLEM(48)DARL 0 0 1 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.27685546875 2 524.278792 1046.54303 0.47042 0.00024663 -1.131 -0.00059293 -0.66053 -0.0003463 524.27814595353 46.83 0.26333 46.83 46.698 46.962 0 30 12 3 0 0 0 0.044011 1 25581 25581 47.749 9.7747 1 8317800 1356 8779 969 978 1485 1485 1479 0.02162079362960867 ALLENMEGLFL 11 Unmodified _ALLENMEGLFL_ 0 0 0 nc|ENSG00000111481|P61923-2|COPZ1;ENST00000551412.5_1_12:54718935-54741629:+|nuORF;nc|ENSG00000111481|P61923-3|COPZ1;nc|ENSG00000111481|P61923-5|COPZ1;ENSG00000111481|ENST00000262061|COPZ1;nc|ENSG00000111481|P61923-4|COPZ1 nc|ENSG00000111481|P61923-2|COPZ1 nc|ENSG00000111481|P61923-2|COPZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.329833984375 2 625.328482 1248.64241 0.65036 0.00040669 0.47934 0.00029975 1.1297 0.00070644 625.3289351035487 101.47 0.14156 95.298 95.231 95.373 -6.1757 20 6 4 0 0 0 0.038129 1 68087 68087 75.761 45.124 1 85513000 1357 2793 970 979 1486 1486 0.028034772570663336 ALLEQVNAL 9 Unmodified _ALLEQVNAL_ 0 0 0 nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF nc|ENSG00000137100|O75935-2|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7825317382812 2 485.782025 969.549496 0.25709 0.00012489 0.47649 0.00023147 0.73358 0.00035636 485.78219649175435 65.821 0.31415 65.821 65.624 65.938 0 29 15 2 0 0 0 0.095405 2 36673 36673;36777 34.102 16.99 1 5420500 1358 4899 971 980 1487;1488 1487 0.0635034058598194 ALLEQVNAL 9 Unmodified _ALLEQVNAL_ 0 0 0 nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34616009-34616228:-|nuORF nc|ENSG00000137100|O75935-2|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2648315429688 2 485.782025 969.549496 0.25499 0.00012387 0.30046 0.00014596 0.55545 0.00026983 485.78204601788394 66.242 0.16856 65.759 65.711 65.88 -0.48323 11 9 2 0 0 0 0.18118 1 36180 36180 18.135 10.225 1 2221300 1359 4899 971 980 1489 1489 0.0635034058598194 ALLETNPYL 9 Unmodified _ALLETNPYL_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2830810546875 2 517.281857 1032.54916 0.43362 0.0002243 0.70312 0.00036371 1.1367 0.00058801 517.2821216181703 68.42 0.40468 68.42 68.204 68.609 0 43 18 3 0 0 0 0.070838 2 38110 38110;38202 39.957 14.558 1 2582000 1360 2242 972 981 1490;1491 1490 0.034189208661246084 ALLETNPYL 9 Unmodified _ALLETNPYL_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2822875976562 2 517.281857 1032.54916 0.15261 7.8942E-05 -0.10438 -5.3995E-05 0.048228 2.4948E-05 517.2818409368673 68.926 0.38103 68.445 68.223 68.604 -0.48071 26 16 2 0 0 0 0.013323 1 37661 37661 71.134 38.828 1 3666800 1361 2242 972 981 1492 1492 0.034189208661246084 ALLETVNRL 9 Unmodified _ALLETVNRL_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8090209960938 2 514.808574 1027.60259 0.37974 0.00019549 0.8462 0.00043563 1.2259 0.00063112 514.8088811192044 53.501 0.28834 53.049 52.878 53.167 -0.45173 41 13 4 0 0 0 0.010818 1 28951 28951 78.149 16.792 1 11835000 1362 4768 973 982 1493 1493 0.0898971836866167 ALLETVNRL 9 Unmodified _ALLETVNRL_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2920532226562 2 514.808574 1027.60259 0.34993 0.00018015 0.8344 0.00042956 1.1843 0.0006097 514.8086821855154 53.159 0.11295 53.096 53.024 53.136 -0.063423 8 5 2 0 0 0 0.16895 1 28790 28790 18.146 5.6148 1 644470 1363 4768 973 982 1494 1494 0.0898971836866167 ALLETVNRL 9 Unmodified _ALLETVNRL_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8082885742188 2 514.808574 1027.60259 0.82277 0.00042357 -0.37542 -0.00019327 0.44735 0.0002303 514.8081161707513 59.679 0.36819 53.564 53.394 53.762 -6.1147 33 20 3 0 0 0 0.022193 1 38314 38314 61.357 6.5839 1 51238000 1364 4768 973 982 1495 1495 0.0898971836866167 ALLFRIVLKRR 11 Unmodified _ALLFRIVLKRR_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.9664916992188 2 692.966806 1383.91906 NaN NaN NaN NaN NaN NaN NaN 89.109 1 89.109 88.609 89.609 0 0 0 0 0.9435 1 49311 49311 0 0 1 1365 5059 974 983 1496 1496 0.24245556326786755 ALLGDLTKA 9 Unmodified _ALLGDLTKA_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2715454101562 2 451.271293 900.528032 -0.13054 -5.8908E-05 0.39423 0.00017791 0.26369 0.000119 451.2713625445183 51.304 0.17147 50.89 50.758 50.93 -0.41351 15 8 2 0 0 0 0.091924 1 27620 27620 34.932 2.6266 1 2373300 1366 1364;2337 975 984 1497 1497 0.07378955557271638 ALLGDLTKA 9 Unmodified _ALLGDLTKA_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2713623046875 2 451.271293 900.528032 1.1432 0.00051591 -0.46266 -0.00020878 0.68059 0.00030713 451.27094668339737 57.524 0.35607 51.496 51.294 51.65 -6.0275 23 18 2 0 0 0 0.062454 1 36794 36794 41.956 1.9982 1 13214000 1367 1364;2337 975 984 1498 1498 0.07378955557271638 ALLGDLTKA 9 Unmodified _ALLGDLTKA_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 451.271293 900.528032 0.75757 0.00034187 -0.41754 -0.00018843 0.34002 0.00015344 451.2710892921599 50.893 0.18239 50.893 50.813 50.996 0 0.0012108 -0.00025979 NaN 34.932 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2068300 1368 1364;2337 975 984 0.07378955557271638 ALLGILQHV 9 Unmodified _ALLGILQHV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.3026733398438 2 482.302927 962.591301 NaN NaN NaN NaN NaN NaN NaN 76.914 1 76.434 75.934 76.934 -0.47945 0 0 0 0.6032 1 42110 42110 12.532 7.3009 1 1369 499 976 985 1499 1499 0.10850941065177722 ALLGILQHV 9 Unmodified _ALLGILQHV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.3026123046875 2 482.302927 962.591301 0.25031 0.00012072 0.15409 7.4319E-05 0.4044 0.00019504 482.3029879875777 76.325 0.31801 76.373 76.247 76.565 0.047951 31 12 3 0 0 0 0.03327 1 42094 42094 53.576 0 1 10753000 1370 499 976 985 1500 1500 0.10850941065177722 ALLGILQHV 9 Unmodified _ALLGILQHV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.3036193847656 2 482.302927 962.591301 1.4626 0.0007054 0.50826 0.00024513 1.9708 0.00095053 482.30316740119184 97.279 0.36627 91.103 90.895 91.261 -6.1757 48 20 3 0 0 0 0.013472 2 64421 64421;64548 70.716 26.309 1 39091000 1371 499 976 985 1501;1502 1501 0.10850941065177722 ALLGQPLAF 9 Unmodified _ALLGQPLAF_ 0 0 0 REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2766418457031 2 465.276378 928.538203 -0.012444 -5.7899E-06 0.62608 0.0002913 0.61364 0.00028551 465.27661711521074 51.17 0.25961 51.116 51.007 51.266 -0.053871 28 12 3 0 0 0 0.078417 1 27670 27670 38.151 4.0487 1 5908900 + 1372 21403 977 986 1503 1503 0.07107563282522733 ALLGQPLAF 9 Unmodified _ALLGQPLAF_ 0 0 0 REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 REV__nc|ENSG00000157833|Q75VX8-3|GAREM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 465.276378 928.538203 -0.012444 -5.7899E-06 0.62608 0.0002913 0.61364 0.00028551 465.27661711521074 51.17 0.25961 51.116 51.007 51.266 -0.053871 -0.0044588 3.1961E-06 NaN 38.151 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5908900 + 1373 21403 977 986 0.07107563282522733 ALLGRLAEL 9 Unmodified _ALLGRLAEL_ 0 0 0 nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3004455566406 2 478.300384 954.586216 1.0594 0.00050672 -0.52193 -0.00024964 0.53748 0.00025708 478.30022845656276 92.248 0.31264 86.072 85.872 86.185 -6.1757 22 18 2 0 0 0 0.011671 1 60977 60977 75.761 20.987 1 10007000 1374 3922 978 987 1504 1504 0.10710637202555517 ALLGYLQEV 9 Unmodified _ALLGYLQEV_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2844848632812 2 503.2844 1004.55425 0.2303 0.00011591 0.44573 0.00022433 0.67603 0.00034024 503.2843740909005 82.147 0.29637 81.652 81.498 81.794 -0.49521 28 11 3 0 0 0 0.22317 1 44958 44958 20.871 2.7362 1 1862900 1375 6377 979 988 1505 1505 0.0521522472874949 ALLGYLQEV 9 Unmodified _ALLGYLQEV_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 503.2844 1004.55425 0.46648 0.00023477 -0.0029514 -1.4854E-06 0.46353 0.00023329 503.2843165712424 81.617 0.24658 81.617 81.491 81.737 0 -0.017405 -0.00020451 NaN 20.871 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 456200 1376 6377 979 988 0.0521522472874949 ALLILLDKE 9 Unmodified _ALLILLDKE_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.324462890625 2 514.323525 1026.6325 1.489 0.00076583 0.4245 0.00021833 1.9135 0.00098416 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.6149 2 72749 72749;72859 0.45834 0.45834 1 4939700 1377 4143 980 989 1506;1507 1506 0.12024657313986609 ALLKIEGVYA 10 Unmodified _ALLKIEGVYA_ 0 0 0 ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.821533203125 2 538.82115 1075.62775 -0.44937 -0.00024213 0.47984 0.00025855 0.030468 1.6417E-05 538.8215093866086 61.095 0.28107 60.606 60.475 60.756 -0.48932 31 13 3 0 0 0 0.34249 1 33241 33241 24.991 2.2547 1 8859100 1378 9098 981 990 1508 1508 0.09295773171243127 ALLKWEESPL 10 Unmodified _ALLKWEESPL_ 0 0 0 REV__nc|ENSG00000100593|Q6H9L7-5|ISM2 REV__nc|ENSG00000100593|Q6H9L7-5|ISM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8875732421875 3 395.888651 1184.64412 -0.25839 -0.00010229 -1.1173 -0.00044233 -1.3757 -0.00054462 395.88824061144044 30.687 0.20285 30.717 30.604 30.806 0.030104 13 8 2 0 0 0 0.69848 1 16061 16061 3.0723 0 1 1497700 + 1379 18085 982 991 1509 1509 0.059188543373238645 ALLKYIETL 9 Unmodified _ALLKYIETL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3241577148438 2 532.323525 1062.6325 0.57246 0.00030473 -0.21809 -0.0001161 0.35437 0.00018864 532.3233777162814 72.636 0.27439 72.16 72.02 72.295 -0.47605 24 12 3 0 0 0 0.03568 1 39741 39741 52.268 0 1 1890100 1380 4745 983 992 1510 1510 0.10368657313983931 ALLLEFMYE 9 Unmodified _ALLLEFMYE_ 0 0 0 nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18 nc|ENSG00000179456|Q99592|ZBTB18 nc|ENSG00000179456|Q99592|ZBTB18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8591003417969 3 376.859704 1127.55728 0.75286 0.00028372 -1.9381 -0.00073038 -1.1852 -0.00044666 376.8587816001904 81.441 0.32314 80.948 80.792 81.116 -0.49247 29 13 3 0 0 0 0.4887 1 44588 44588 8.1555 0 1 728400 1381 8837 984 993 1511 1511 -0.0013926820874985424 ALLLKELYRLW 11 Unmodified _ALLLKELYRLW_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2908935546875 3 473.290379 1416.84931 NaN NaN NaN NaN NaN NaN NaN 2.7422 1 2.7299 2.2299 3.2299 -0.012334 0 0 0 0.94338 1 1393 1393 0.08335 0.08335 1 + 1382 19669 985 994 1512 1512 0.15755632867558234 ALLLNDKQS 9 Unmodified _ALLLNDKQS_ 0 0 0 REV__ENST00000512712.2_1_4:2937493-2937682:+|nuORF REV__ENST00000512712.2_1_4:2937493-2937682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2837219238281 2 501.284931 1000.55531 0.73456 0.00036822 -0.85914 -0.00043067 -0.12458 -6.2449E-05 501.28427803304055 36.286 0.20175 36.286 36.186 36.388 0 16 9 2 0 0 0 0.026094 1 19238 19238 57.471 5.203 1 4214300 + 1383 28167 986 995 1513 1513 0.05505439097657927 ALLLSGEL 8 Unmodified _ALLLSGEL_ 0 0 0 REV__ENSG00000183160|ENST00000392806|TMEM119 REV__ENSG00000183160|ENST00000392806|TMEM119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 815.4873657226562 1 815.487296 814.48002 -0.38298 -0.00031232 0.18911 0.00015422 -0.19387 -0.0001581 815.4873633751106 51.989 0.28622 51.989 51.842 52.129 0 28 12 3 0 0 0 0.1036 1 28707 28707 98.807 0 1 11226000 + 1384 23326 987 996 1514 1514 0.06535881637239527 ALLLSGEL 8 Unmodified _ALLLSGEL_ 0 0 0 REV__ENSG00000183160|ENST00000392806|TMEM119 REV__ENSG00000183160|ENST00000392806|TMEM119 MULTI-MSMS AL20221201_MKP_PDAC_01 4 815.4873046875 1 815.487296 814.48002 1.1174 0.00091126 -0.025306 -2.0637E-05 1.0921 0.00089062 815.4872558749494 58.25 0.45727 52.222 52.047 52.504 -6.0275 43 24 2 0 0 0 0.078553 2 37255 37255;37379 112.56 0 1 33211000 + 1385 23326 987 996 1515;1516 1515 0.06535881637239527 ALLLSGEL 8 Unmodified _ALLLSGEL_ 0 0 0 REV__ENSG00000183160|ENST00000392806|TMEM119 REV__ENSG00000183160|ENST00000392806|TMEM119 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 815.487296 814.48002 -0.38298 -0.00031232 0.18911 0.00015422 -0.19387 -0.0001581 815.4873633751106 51.989 0.28622 51.989 51.842 52.129 0 -0.11651 0.00010041 NaN 112.56 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 11226000 + 1386 23326 987 996 0.06535881637239527 ALLLSGEL 8 Unmodified _ALLLSGEL_ 0 0 0 REV__ENSG00000183160|ENST00000392806|TMEM119 REV__ENSG00000183160|ENST00000392806|TMEM119 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 815.487296 814.48002 1.1174 0.00091126 -0.025306 -2.0637E-05 1.0921 0.00089062 815.4872558749494 58.25 0.45727 52.222 52.047 52.504 -6.0275 0.11651 -7.4438E-05 NaN 112.56 43 24 2 NaN NaN NaN NaN 0 NaN NaN 0 33211000 + 1387 23326 987 996 0.06535881637239527 ALLMCPLP 8 Unmodified _ALLMCPLP_ 0 0 0 nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF nc|ENSG00000184313|Q68CQ1-2|MROH7 nc|ENSG00000184313|Q68CQ1-2|MROH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2359924316406 2 429.23481 856.455067 0.99878 0.00042871 0.98707 0.00042369 1.9858 0.00085239 429.23516543013733 64.306 0.4766 64.296 63.9 64.377 -0.010529 62 23 3 0 0 0 0.80624 1 35175 35175 2.8892 0.31174 1 13755000 1388 9245 988 997 1517 1517 0.021097872386462768 ALLMCPLP 8 Unmodified _ALLMCPLP_ 0 0 0 nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF nc|ENSG00000184313|Q68CQ1-2|MROH7 nc|ENSG00000184313|Q68CQ1-2|MROH7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.23481 856.455067 0.093064 3.9946E-05 1.4246 0.00061148 1.5177 0.00065143 429.23533781408184 64.535 0.52425 64.535 64.126 64.65 0 0.11937 0.00017034 NaN 2.8892 68 25 3 NaN NaN NaN NaN 0 NaN NaN 0 5938000 1389 9245 988 997 0.021097872386462768 ALLNDHIYV 9 Unmodified _ALLNDHIYV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MSMS AL20221201_MKP_PDAC_01 4 353.1947937011719 3 353.194075 1056.5604 NaN NaN NaN NaN NaN NaN NaN 96.286 1 90.11 89.61 90.61 -6.1757 0 0 0 0.41346 1 63802 63802 18.373 3.1246 1 1390 3284 989 998 1518 1518 0.034377429602727716 ALLNIKVKL 9 Unmodified _ALLNIKVKL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3499145507812 2 506.349877 1010.6852 0.43666 0.0002211 -0.20907 -0.00010586 0.22759 0.00011524 506.3497206465758 61.119 0.73315 61.076 60.927 61.66 -0.043507 102 36 4 0 0 0 0.0082485 3 33316 33316;33428;33535 96.285 37.606 1 52318000 1391 2759;14947 990 999 1519;1520;1521 1519 0.18028660167453836 ALLNIKVKL 9 Unmodified _ALLNIKVKL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3501892089844 2 506.349877 1010.6852 1.2262 0.00062089 -0.28893 -0.0001463 0.93728 0.00047459 506.3496784361824 88.163 0.91208 81.987 81.512 82.424 -6.1757 175 50 4 0 0 0 0.0082485 5 57915 57915;58034;58166;58288;58418 108 55.729 1 340550000 1392 2759;14947 990 999 1522;1523;1524;1525;1526 1522 0.18028660167453836 ALLNILSEV 9 Unmodified _ALLNILSEV_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2930603027344 2 486.292225 970.569897 0.47655 0.00023174 1.6658 0.00081008 2.1424 0.0010418 486.2929014829577 98.905 0.2128 98.712 98.599 98.812 -0.1932 14 6 3 0 0 0 0.045537 1 54004 54004 46.921 4.8263 1 1416000 1393 601 991 1000 1527 1527 0.08343511245811897 ALLNILSEV 9 Unmodified _ALLNILSEV_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 971.5797119140625 1 971.577174 970.569897 0.24907 0.00024199 2.8962 0.0028139 3.1453 0.0030559 971.5787345136912 98.906 0.15245 98.713 98.63 98.782 -0.19321 6 4 2 0 0 0 0.078417 1 54019 54019 38.151 4.0487 1 925310 1394 601 991 1000 1528 1528 0.08343511245811897 ALLNILSEV 9 Unmodified _ALLNILSEV_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2923278808594 2 486.292225 970.569897 1.7174 0.00083518 -2.602 -0.0012653 -0.8846 -0.00043017 486.29152337455514 100.84 0.27019 94.661 94.599 94.869 -6.1757 25 16 3 0 0 0 0.052168 1 67557 67557 44.407 10.305 1 141660000 1395 601 991 1000 1529 1529 0.08343511245811897 ALLNVELEL 9 Unmodified _ALLNVELEL_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2975158691406 2 507.297507 1012.58046 0.39829 0.00020205 0.24121 0.00012236 0.6395 0.00032441 507.29765162419704 99.896 0.20823 93.72 93.611 93.819 -6.1757 36 15 3 0 0 0 0.012148 1 66660 66660 74.423 18.246 1 141020000 1396 4726 992 1001 1530 1530 0.07467493900230693 ALLNVELEL 9 Unmodified _ALLNVELEL_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.297507 1012.58046 2.001 0.0010151 -0.56409 -0.00028616 1.4369 0.00072892 507.2972607736283 93.446 0.090561 93.469 93.404 93.494 0.02298 -0.12566 -0.00076523 NaN 74.423 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 417850 1397 4726 992 1001 0.07467493900230693 ALLPAALPQA 10 Unmodified _ALLPAALPQA_ 0 0 0 ENST00000597008.5_1_19:4100806-4102439:-|nuORF ENST00000597008.5_1_19:4100806-4102439:-|nuORF ENST00000597008.5_1_19:4100806-4102439:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7660827636719 2 482.794935 963.575317 -0.088515 -4.2735E-05 -0.6198 -0.00029924 -0.70832 -0.00034197 482.79473142138653 40.631 0.22939 40.631 40.529 40.758 0 20 12 2 0 0 0 0.22667 1 21892 21892 10.824 4.6181 1 3244400 1398 15772 993 1002 1531 1531 0.09207234828272703 ALLPNCKYM 9 Unmodified _ALLPNCKYM_ 0 0 0 ENST00000432735.5_1_21:47660812-47660947:+|nuORF ENST00000432735.5_1_21:47660812-47660947:+|nuORF ENST00000432735.5_1_21:47660812-47660947:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.5146789550781 3 351.513763 1051.51946 0.70119 0.00024648 2.4293 0.00085393 3.1305 0.0011004 351.5145769494468 75.164 0.21591 74.687 74.605 74.821 -0.47714 17 9 2 0 0 0 0.41742 1 41148 41148 7.609 0 1 1351100 1399 13280 994 1003 1532 1532 -0.004240576752181369 ALLPQNHKL 9 Unmodified _ALLPQNHKL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MSMS AL20221201_MKP_PDAC_01 4 517.3115234375 2 517.311284 1032.60801 NaN NaN NaN NaN NaN NaN NaN 34.902 1 30.807 30.307 31.307 -4.0951 0 0 0 0.029091 1 20180 20180 67.344 22.937 1 1400 3879 995 1004 1533 1533 0.09301441951129163 ALLPSSPTL 9 Unmodified _ALLPSSPTL_ 0 0 0 nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF;ENST00000546997.1_1_14:105676890-105678659:-|nuORF nc|ENSG00000185024|Q92994-7|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 898.5233154296875 1 898.52441 897.517133 -0.1617 -0.00014529 1.3361 0.0012005 1.1744 0.0010552 898.5254880332224 67.391 0.25037 66.909 66.78 67.031 -0.48219 17 10 2 0 0 0 0.010877 1 36799 36799 77.984 17.595 1 1496300 1401 9320 996 1005 1534 1534 0.06427553183004875 ALLPSSPTL 9 Unmodified _ALLPSSPTL_ 0 0 0 nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;ENST00000547374.5_1_14:105676890-105677657:-|nuORF;ENST00000546997.1_1_14:105676890-105678659:-|nuORF nc|ENSG00000185024|Q92994-7|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7655639648438 2 449.765843 897.517133 0.39221 0.0001764 -0.26456 -0.00011899 0.12766 5.7415E-05 449.7655561692674 67.398 0.25121 66.916 66.802 67.053 -0.48219 16 10 2 0 0 0 0.18465 1 36836 36836 24.674 0 1 818330 1402 9320 996 1005 1535 1535 0.06427553183004875 ALLPVRAR 8 Unmodified _ALLPVRAR_ 0 0 0 ENST00000523488.5_1_8:3008917-3019783:-|nuORF;ENST00000335551.11_1_8:3000159-3019783:-|nuORF ENST00000523488.5_1_8:3008917-3019783:-|nuORF ENST00000523488.5_1_8:3008917-3019783:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2953796386719 2 448.295436 894.57632 0.52922 0.00023725 -0.72044 -0.00032297 -0.19122 -8.5723E-05 448.2952368352704 34.269 0.18364 34.296 34.184 34.367 0.027401 13 8 2 0 0 0 0.67481 1 18088 18088 19.439 0 1 1726700 1403 11899 997 1006 1536 1536 0.12481493987831982 ALLQGVGSLE 10 Unmodified _ALLQGVGSLE_ 0 0 0 REV__ENSG00000188368|ENST00000341747|PRR19 REV__ENSG00000188368|ENST00000341747|PRR19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2547302246094 2 493.779482 985.544411 0.5639 0.00027844 -1.1621 -0.00057383 -0.59822 -0.00029539 493.77893583701933 36.737 0.20916 36.737 36.628 36.837 0 24 9 4 0 0 0 0.22327 1 19487 19487 13.906 2.2658 1 1387600 + 1404 23709 998 1007 1537 1537 0.051060367233731085 ALLQRLEAL 9 Unmodified _ALLQRLEAL_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8189086914062 2 513.818941 1025.62333 0.45199 0.00023224 -0.01678 -8.6221E-06 0.43521 0.00022362 513.818891296454 67.588 0.38555 67.105 66.889 67.275 -0.48218 47 16 4 0 0 0 0.0094097 2 36870 36870;36971 82.529 22.455 1 18186000 1405 1871 999 1008 1538;1539 1538 0.11154308748336916 ALLQRLEAL 9 Unmodified _ALLQRLEAL_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8192749023438 2 513.818941 1025.62333 0.80797 0.00041515 0.16519 8.4878E-05 0.97316 0.00050003 513.8191504209963 67.08 0.22676 67.098 66.917 67.143 0.018036 25 10 3 0 0 0 0.029718 1 36796 36796 55.503 3.8729 1 5150100 1406 1871 999 1008 1540 1540 0.11154308748336916 ALLQRLEAL 9 Unmodified _ALLQRLEAL_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8197021484375 2 513.818941 1025.62333 0.9037 0.00046434 0.35425 0.00018202 1.2579 0.00064636 513.819198088824 94.79 0.3217 88.614 88.445 88.767 -6.1757 52 18 4 0 0 0 0.0094097 2 62859 62739;62859 82.529 23.85 1 86768000 1407 1871 999 1008 1541;1542 1542 0.11154308748336916 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.8010559082031 2 507.800749 1013.58694 0.76841 0.0003902 -0.077682 -3.9447E-05 0.69072 0.00035075 507.800676884632 53.85 0.28545 53.85 53.705 53.991 0 30 12 3 0 0 0 0.018301 1 29849 29849 65.235 17.486 1 12788000 1408 16412 1000 1009 1543 1543 0.08069431851606623 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8009948730469 2 507.800749 1013.58694 -0.1424 -7.2309E-05 0.15331 7.7849E-05 0.01091 5.54E-06 507.80087407137813 54.27 0.30755 53.803 53.626 53.934 -0.46664 39 15 4 0 0 0 0.018301 1 29357 29357 65.235 14.38 1 24730000 1409 16412 1000 1009 1544 1544 0.08069431851606623 ALLQSDVRL 9 Unmodified _ALLQSDVRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8003540039062 2 507.800749 1013.58694 0.8532 0.00043326 -0.55546 -0.00028206 0.29775 0.0001512 507.8003779937633 60.281 0.47784 54.166 53.902 54.379 -6.1147 57 24 3 0 0 0 0.044011 2 38731 38731;38892 47.749 13.646 1 95485000 1410 16412 1000 1009 1545;1546 1545 0.08069431851606623 ALLRKSYSEP 10 Unmodified _ALLRKSYSEP_ 0 0 0 nc|ENSG00000129682|Q92913-2|FGF13 nc|ENSG00000129682|Q92913-2|FGF13 nc|ENSG00000129682|Q92913-2|FGF13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1928100585938 3 388.552151 1162.63462 0.0011239 4.3671E-07 -0.37377 -0.00014523 -0.37264 -0.00014479 388.55203760847826 37.335 0.1897 37.335 37.238 37.428 0 12 9 2 0 0 0 0.23993 1 19907 19907 1.7423 0.14999 1 1865600 1411 16183 1001 1010 1547 1547 0.059810860518155096 ALLRLGPRASL 11 Unmodified _ALLRLGPRASL_ 0 0 0 REV__ENSG00000237289|ENST00000441322|CKMT1B REV__ENSG00000237289|ENST00000441322|CKMT1B MSMS AL20221201_MKP_PDAC_01 4 583.8741455078125 2 583.87204 1165.72953 NaN NaN NaN NaN NaN NaN NaN 103.77 1 97.593 97.093 98.093 -6.1757 0 0 0 0.37978 1 69545 69545 29.082 3.6823 1 + 1412 24371 1002 1011 1548 1548 0.15329064313641538 ALLSAAFLL 9 Unmodified _ALLSAAFLL_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000528042.1_1_11:57480099-57505208:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7876892089844 2 459.786579 917.558604 0.81597 0.00037517 1.7979 0.00082665 2.6139 0.0012018 459.78704025804456 101.57 0.15156 95.394 95.291 95.443 -6.1757 11 7 2 0 0 0 0.045537 1 68172 68172 46.921 2.5139 1 14271000 1413 10445 1003 1012 1549 1549 0.09652733942323266 ALLSAAFLL 9 Unmodified _ALLSAAFLL_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000528042.1_1_11:57480099-57505208:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5667724609375 1 918.565881 917.558604 0.54935 0.00050461 0.52559 0.00048279 1.0749 0.0009874 918.5664972430734 101.58 0.15156 95.406 95.291 95.443 -6.1757 15 7 3 0 0 0 0.019979 1 68180 68180 63.563 6.0915 1 35494000 1414 10445 1003 1012 1550 1550 0.09652733942323266 ALLSGIVSI 9 Unmodified _ALLSGIVSI_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.5443725585938 1 872.545145 871.537869 0.99184 0.00086542 -0.73071 -0.00063758 0.26112 0.00022784 872.5448496280532 99.37 0.14823 93.194 93.128 93.276 -6.1757 17 9 2 0 0 0 0.0088975 1 66132 66132 104.8 7.7245 1 68227000 1415 8295 1004 1013 1551 1551 0.09696143562666748 ALLSLFGIPL 10 Unmodified _ALLSLFGIPL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.8029174804688 2 522.328611 1042.64267 1.5818 0.00082621 -0.25826 -0.0001349 1.3235 0.00069132 522.3285407627177 100.98 0.1519 94.807 94.717 94.869 -6.1757 27 8 4 0 0 0 0.22327 1 67713 67713 18.135 1.1927 1 378350000 1416 1777 1005 1014 1552 1552 0.12305265039231017 ALLSPLSPL 9 Unmodified _ALLSPLSPL_ 0 0 0 ENST00000550513.1_1_12:53689351-53689741:+|nuORF ENST00000550513.1_1_12:53689351-53689741:+|nuORF ENST00000550513.1_1_12:53689351-53689741:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2823791503906 2 455.784036 909.553519 0.94932 0.00043268 -1.3281 -0.00060531 -0.37875 -0.00017263 455.7839221528445 83.061 0.79529 76.886 76.608 77.403 -6.1757 73 42 2 0 0 0 0.12841 1 54903 54903 30.225 1.738 1 34202000 1417 15164 1006 1015 1553 1553 0.09512430079701062 ALLSRLEQI 9 Unmodified _ALLSRLEQI_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;nc|ENSG00000125970|Q9UKM9-2|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.8168334960938 2 521.816399 1041.61824 0.47668 0.00024874 -0.077547 -4.0465E-05 0.39913 0.00020827 521.8164416949795 61.413 0.24222 61.413 61.254 61.497 0 21 10 3 0 0 0 0.01085 1 34224 34224 78.06 3.8608 1 2521200 1418 3917 1007 1016 1554 1554 0.09910004885705348 ALLSRLEQI 9 Unmodified _ALLSRLEQI_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;nc|ENSG00000125970|Q9UKM9-2|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.8163452148438 2 521.816399 1041.61824 0.20931 0.00010922 -0.078922 -4.1183E-05 0.13039 6.8038E-05 521.8163619029971 61.805 0.35052 61.317 61.139 61.489 -0.48764 52 16 4 0 0 0 0.0086209 2 33709 33606;33709 89.401 17.879 1 48542000 1419 3917 1007 1016 1555;1556 1556 0.09910004885705348 ALLSRLEQI 9 Unmodified _ALLSRLEQI_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;nc|ENSG00000125970|Q9UKM9-2|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8165283203125 2 521.816399 1041.61824 0.20852 0.00010881 -0.17927 -9.3548E-05 0.029242 1.5259E-05 521.8162533492703 61.39 0.2262 61.357 61.25 61.476 -0.032787 23 10 3 0 0 0 0.0093064 1 33505 33505 83.429 3.8324 1 7630000 1420 3917 1007 1016 1557 1557 0.09910004885705348 ALLSRLEQI 9 Unmodified _ALLSRLEQI_ 0 0 0 ENSG00000125970|ENST00000246194|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;nc|ENSG00000125970|Q9UKM9-2|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8174438476562 2 521.816399 1041.61824 0.23034 0.00012019 0.12365 6.4525E-05 0.35399 0.00018472 521.8162547313984 84.904 0.77556 78.729 78.262 79.037 -6.1757 82 45 2 0 0 0 0.012228 3 55636 55636;55771;55903 74.2 18.697 1 38951000 1421 3917 1007 1016 1558;1559;1560 1558 0.09910004885705348 ALLSSLARC 9 Carbamidomethyl (C) _ALLSSLARC(Carbamidomethyl (C))_ ALLSSLARC(1) ALLSSLARC(100) 0 1 0 ENSG00000107789|ENST00000371996|MINPP1;nc|ENSG00000107789|Q9UNW1-3|MINPP1;nc|ENSG00000107789|Q9UNW1-2|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.272705078125 2 495.773677 989.5328 0.74223 0.00036798 0.4444 0.00022032 1.1866 0.0005883 495.7741605379906 52.331 0.43878 46.596 46.378 46.817 -5.7345 43 25 2 0 0 0 0.0088174 3 32901 32901;32932;33102 103.75 42.391 1 97123000 1422 2518 1008 1017 1561;1562;1563 1561 253 0.03761516428392042 ALLSTIGMSY 10 Unmodified _ALLSTIGMSY_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2229614257812 2 528.275718 1054.53688 0.77545 0.00040965 3.5673 0.0018845 4.3428 0.0022942 528.2773018681727 36.791 0.147 36.791 36.71 36.857 0 11 6 2 0 0 0 0.23227 1 19550 19550 10.824 1.4765 1 794950 + 1423 19802 1009 1018 1564 1564 0.011795611314482812 ALLSTKLE 8 Unmodified _ALLSTKLE_ 0 0 0 REV__nc|ENSG00000056487|Q96EK2-4|PHF21B REV__nc|ENSG00000056487|Q96EK2-4|PHF21B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.5275268554688 1 874.52441 873.517133 -0.70249 -0.00061435 1.0101 0.00088338 0.30763 0.00026903 874.5250119157057 61.456 0.2986 60.966 60.818 61.116 -0.48932 23 13 2 0 0 0 0.77907 1 33432 33432 10.183 0 1 2263400 + 1424 17298 1010 1019 1565 1565 0.07531553182991502 ALLTGEVIV 9 Unmodified _ALLTGEVIV_ 0 0 0 ENST00000397515.6_1_16:1362453-1362528:+|nuORF ENST00000397515.6_1_16:1362453-1362528:+|nuORF ENST00000397515.6_1_16:1362453-1362528:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 914.5541381835938 1 914.55571 913.548434 0.1815 0.00016599 0.54259 0.00049622 0.72408 0.00066221 914.556175941202 84.116 0.35594 83.616 83.441 83.797 -0.49961 21 15 2 0 0 0 0.39863 1 45994 45994 12.532 0.89125 1 979180 1425 12824 1011 1020 1566 1566 0.08820126217096913 ALLVLLKKAP 10 Unmodified _ALLVLLKKAP_ 0 0 0 ENSG00000073969|ENST00000398238|NSF;nc|ENSG00000073969|P46459-2|NSF ENSG00000073969|ENST00000398238|NSF ENSG00000073969|ENST00000398238|NSF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1065.736694335938 1 1065.73943 1064.73215 0.15379 0.0001639 -1.7533 -0.0018685 -1.5995 -0.0017046 1065.7374439690786 57.108 0.42529 56.622 56.247 56.672 -0.48554 21 19 2 0 0 0 0.23821 1 30966 30966 4.3292 2.485 1 4937800 1426 1118 1012 1021 1567 1567 0.20237519718625663 ALLVSAEI 8 Unmodified _ALLVSAEI_ 0 0 0 REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF REV__ENST00000547226.5_1_12:56711395-56716647:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 815.487548828125 1 815.487296 814.48002 -0.38298 -0.00031232 0.18911 0.00015422 -0.19387 -0.0001581 815.4873633751106 51.989 0.28622 51.989 51.842 52.129 0 28 12 3 0 0 0 0.13235 1 28832 28832 90.836 0 1 11226000 + 1427 20071 1013 1022 1568 1568 0.06535881637239527 ALLWELVSP 9 Unmodified _ALLWELVSP_ 0 0 0 REV__ENST00000445935.5_2_21:47737957-47742843:-|nuORF REV__ENST00000445935.5_2_21:47737957-47742843:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2938842773438 2 514.294768 1026.57498 0.22526 0.00011585 -1.6046 -0.00082524 -1.3793 -0.00070939 514.2947874183338 92.363 0.28516 92.363 92.233 92.518 0 30 22 2 0 0 0 0.58865 1 51142 51142 2.0598 0.21551 1 847650 + 1428 27135 1014 1023 1569 1569 0.0627581510843811 ALLWWTAPI 9 Unmodified _ALLWWTAPI_ 0 0 0 ENST00000452796.6_2_17:43112307-43112385:-|nuORF;ENST00000342350.9_2_17:43112307-43138336:-|nuORF ENST00000452796.6_2_17:43112307-43112385:-|nuORF ENST00000452796.6_2_17:43112307-43112385:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2677612304688 2 535.805303 1069.59605 0.40955 0.00021944 3.4969 0.0018736 3.9064 0.0020931 535.8070703269221 39.254 0.20596 39.254 39.135 39.341 0 20 9 3 0 0 0 0.19298 1 21026 21026 13.508 13.508 1 2678400 1429 11980 1015 1024 1570 1570 0.0640382520791718 ALMADMVYV 9 2 Oxidation (M) _ALM(Oxidation (M))ADM(Oxidation (M))VYV_ ALM(1)ADM(1)VYV ALM(57)ADM(57)VYV 0 0 2 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7408447265625 2 522.740654 1043.46675 0.90497 0.00047307 -1.7119 -0.00089489 -0.80694 -0.00042182 522.7396006699837 51.047 0.52616 51.047 50.843 51.369 0 59 25 3 0 0 0 0.027803 2 28103 28103;28218 56.541 40.694 1 20125000 1430 5575 1016 1025 1571;1572 1571 1025;1026 -0.053240605286646314 ALMADMVYV 9 2 Oxidation (M) _ALM(Oxidation (M))ADM(Oxidation (M))VYV_ ALM(1)ADM(1)VYV ALM(57)ADM(57)VYV 0 0 2 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7410888671875 2 522.740654 1043.46675 0.67116 0.00035085 -0.9908 -0.00051793 -0.31964 -0.00016709 522.7404154534848 51.573 0.34094 51.573 51.369 51.71 0 45 15 4 0 0 0 0.027803 1 28468 28468 56.541 43.033 1 14420000 1431 5575 1016 1025 1573 1573 1025;1026 -0.053240605286646314 ALMADMVYV 9 Unmodified _ALMADMVYV_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.746337890625 2 506.745739 1011.47692 0.99495 0.00050419 -1.9649 -0.00099569 -0.96993 -0.00049151 506.7449526474968 87.096 0.50423 80.92 80.699 81.203 -6.1757 45 27 3 0 0 0 0.18465 1 57402 57402 24.674 10.092 1 22874000 1432 5575 1016 1026 1574 1574 -0.028354528034356008 ALMAMEGYWRF 11 Unmodified _ALMAMEGYWRF_ 0 0 0 ENST00000468308.1_1_2:172378863-172407640:+|nuORF ENST00000468308.1_1_2:172378863-172407640:+|nuORF ENST00000468308.1_1_2:172378863-172407640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.8835144042969 3 458.882626 1373.62605 0.61098 0.00028037 0.23508 0.00010787 0.84605 0.00038824 458.8830906558647 48.116 0.2562 48.078 47.967 48.224 -0.038643 43 12 5 0 0 0 0.70701 1 25937 25937 1.4551 0 1 9380200 1433 13806 1017 1027 1575 1575 -0.04581927180697676 ALMDEVVKA 9 Oxidation (M) _ALM(Oxidation (M))DEVVKA_ ALM(1)DEVVKA ALM(66)DEVVKA 0 0 1 nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1 nc|ENSG00000102144|P00558-2|PGK1 nc|ENSG00000102144|P00558-2|PGK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2602844238281 2 496.260068 990.505582 0.76219 0.00037825 -0.67852 -0.00033672 0.083673 4.1524E-05 496.2597712130966 36.631 0.39545 32.348 32.204 32.599 -4.2835 54 24 3 0 0 0 0.017075 2 21478 21358;21478 66.457 38.828 1 23214000 1434 2021 1018 1028 1576;1577 1577 348 0.009949880973636027 ALMDEVVKA 9 Unmodified _ALMDEVVKA_ 0 0 0 nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1 nc|ENSG00000102144|P00558-2|PGK1 nc|ENSG00000102144|P00558-2|PGK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2628479003906 2 488.26261 974.510668 1.221 0.00059617 -0.67736 -0.00033073 0.54365 0.00026544 488.26247348548986 53.888 0.44486 48.084 47.863 48.308 -5.8042 83 26 4 0 0 0 0.047788 2 34016 34016;34156 45.7 22.963 1 118330000 1435 2021 1018 1029 1578;1579 1578 0.022392919599724337 ALMDLLLRL 9 Unmodified _ALMDLLLRL_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3262939453125 2 529.325545 1056.63654 1.051 0.0005563 -0.27324 -0.00014463 0.77771 0.00041166 529.3252920034422 101.26 0.13981 95.085 95.004 95.144 -6.1757 22 8 4 0 0 0 0.015445 1 67918 67918 68.081 0 1 150370000 1436 1775 1019 1030 1580 1580 0.11048423536067276 ALMDQVHHM 9 Oxidation (M) _ALMDQVHHM(Oxidation (M))_ ALMDQVHHM(1) ALM(-47)DQVHHM(47) 0 0 1 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.4996948242188 3 366.500405 1096.47938 0.61794 0.00022648 -1.471 -0.00053912 -0.85305 -0.00031264 366.50000999564116 25.932 0.29008 22.981 22.804 23.094 -2.9511 24 19 3 0 0 0 0.039985 1 14217 14217 49.933 37.692 2 6088500 1437 3223 1020 1031 1581 1581 576 -0.06499604345776788 ALMDQVHHM 9 Unmodified _ALMDQVHHM_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.170166015625 3 361.168766 1080.48447 1.8922 0.00068339 -1.4389 -0.00051968 0.45327 0.00016371 361.16832722868634 37.304 0.38543 33.021 32.81 33.196 -4.2835 39 22 3 0 0 0 0.038285 1 21887 21887 45.7 34.876 1 11586000 1438 3223 1020 1032 1582 1582 -0.05255300483167957 ALMEAVSHV 9 Oxidation (M) _ALM(Oxidation (M))EAVSHV_ ALM(1)EAVSHV ALM(42)EAVSHV 0 0 1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7448120117188 2 486.744585 971.474617 -0.15678 -7.6311E-05 -0.044776 -2.1795E-05 -0.20155 -9.8106E-05 486.74482838111345 29.372 0.17002 29.372 29.262 29.432 0 19 7 3 0 0 0 0.06187 1 15231 15231 42.095 20.348 1 1115900 1439 944 1021 1033 1583 1583 148 -0.012261652168717774 ALMELFPKL 9 Oxidation (M) _ALM(Oxidation (M))ELFPKL_ ALM(1)ELFPKL ALM(50)ELFPKL 0 0 1 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.304443359375 2 539.304278 1076.594 0.29043 0.00015663 0.1718 9.2654E-05 0.46224 0.00024929 539.3044402984832 74.3 0.36191 74.344 74.137 74.499 0.043983 33 15 3 0 0 0 0.039985 1 40921 40921 49.933 28.186 1 2704900 1440 3541 1022 1034 1584 1584 627 0.05877028407826401 ALMELFPKL 9 Unmodified _ALMELFPKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.306884765625 2 531.306821 1060.59909 0.36189 0.00019227 -0.20479 -0.00010881 0.1571 8.3469E-05 531.3065781935761 99.061 0.11538 92.885 92.807 92.923 -6.1757 14 6 3 0 0 0 0.06294 1 65881 65881 41.84 17.819 1 40812000 1441 3541 1022 1035 1585 1585 0.0712133227045797 ALMGSPQLV 9 Oxidation (M) _ALM(Oxidation (M))GSPQLV_ ALM(1)GSPQLV ALM(82)GSPQLV 0 0 1 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2497253417969 2 466.249503 930.484453 0.48101 0.00022427 -1.8535 -0.00086421 -1.3725 -0.00063994 466.24897033729843 47.003 0.43197 47.003 46.858 47.29 0 42 20 3 0 0 0 0.0094915 1 25789 25789 81.864 31.009 1 7652400 1442 8363 1023 1036 1586 1586 1412 0.016430227884939086 ALMGSPQLV 9 Oxidation (M) _ALM(Oxidation (M))GSPQLV_ ALM(1)GSPQLV ALM(60)GSPQLV 0 0 1 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2496643066406 2 466.249503 930.484453 0.59386 0.00027689 -0.56921 -0.00026539 0.024655 1.1495E-05 466.2493711732204 47.306 0.34775 46.953 46.798 47.145 -0.3526 35 16 3 0 0 0 0.023164 2 25319 25319;25439 60.39 23.351 1 7936500 1443 8363 1023 1036 1587;1588 1587 1412 0.016430227884939086 ALMGSPQLV 9 Unmodified _ALMGSPQLV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 915.4965209960938 1 915.496815 914.489538 0.27279 0.00024974 0.6236 0.0005709 0.89639 0.00082064 915.4971716585956 68.12 0.21173 61.945 61.871 62.083 -6.1757 15 11 2 0 0 0 0.0059585 1 44446 44446 114.65 64.716 1 7233400 1444 8363 1023 1037 1589 1589 0.028873266511027396 ALMISVPAL 9 Oxidation (M) _ALM(Oxidation (M))ISVPAL_ ALM(1)ISVPAL ALM(43)ISVPAL 0 0 1 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7701721191406 2 465.770071 929.52559 NaN NaN NaN NaN NaN NaN NaN 83.937 1 83.437 82.937 83.937 -0.49961 0 0 0 0.10161 1 45938 45938 42.968 23.529 1 1445 6377 1024 1038 1590 1590 1120 0.058007838279763746 ALMISVPAL 9 Unmodified _ALMISVPAL_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MSMS AL20221201_MKP_PDAC_01 4 457.7727355957031 2 457.772614 913.530675 NaN NaN NaN NaN NaN NaN NaN 99.815 1 93.639 93.139 94.139 -6.1757 0 0 0 0.075639 1 66591 66591 49.669 15.482 1 1446 6377 1024 1039 1591 1591 0.07045087690585206 ALMMWKIL 8 Unmodified _ALMMWKIL_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1006.937316894531 1 1005.56239 1004.55512 0.40776 0.00041003 -1.9267 -0.0019374 -1.519 -0.0015274 1005.5605055578193 83.746 0.26929 83.247 83.124 83.393 -0.49891 14 10 2 0 0 0 0.80676 1 45824 45824 2.5775 0 1 618720 1447 9970 1025 1040 1592 1592 0.053020245724610504 ALMPVLNQV 9 Oxidation (M) _ALM(Oxidation (M))PVLNQV_ ALM(1)PVLNQV ALM(50)PVLNQV 0 0 1 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7787475585938 2 500.778428 999.542302 -0.43004 -0.00021535 -0.96687 -0.00048419 -1.3969 -0.00069954 500.7789062998547 55.433 0.22512 55.433 55.327 55.552 0 19 9 3 0 0 0 0.040472 1 30773 30773 49.669 17.552 1 2794300 1448 10570 1026 1041 1593 1593 1699 0.04251284713939185 ALMPVLNQV 9 Oxidation (M) _ALM(Oxidation (M))PVLNQV_ ALM(1)PVLNQV ALM(67)PVLNQV 0 0 1 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7784729003906 2 500.778428 999.542302 -1.1831 -0.00059247 -0.040181 -2.0122E-05 -1.2233 -0.00061259 500.7788215775991 56.275 0.2495 55.789 55.654 55.903 -0.48554 25 12 3 0 0 0 0.016494 1 30558 30558 67.035 34.918 1 7942200 1449 10570 1026 1041 1594 1594 1699 0.04251284713939185 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7810974121094 2 492.78097 983.547388 0.49911 0.00024595 0.19956 9.834E-05 0.69867 0.00034429 492.78132403056827 76.121 0.35778 75.642 75.477 75.835 -0.47945 41 14 4 0 0 0 0.078417 1 41644 41644 38.151 13.477 1 2256600 1450 10570 1026 1042 1595 1595 0.05495588576548016 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.781494140625 2 492.78097 983.547388 1.0012 0.00049339 -0.50732 -0.00025 0.49392 0.0002434 492.780846582399 83.634 0.62783 77.458 77.17 77.798 -6.1757 95 32 4 0 0 0 0.019979 2 54959 54959;55084 63.563 16.642 1 67406000 1451 10570 1026 1042 1596;1597 1596 0.05495588576548016 ALMPVLNQV 9 Unmodified _ALMPVLNQV_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.78097 983.547388 0.45845 0.00022592 0.67717 0.0003337 1.1356 0.00055961 492.781387861927 75.581 0.30283 75.629 75.494 75.797 0.047943 -0.0062487 0.00026254 NaN 38.151 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1112700 1452 10570 1026 1042 0.05495588576548016 ALMSSPQSRTV 11 Unmodified _ALMSSPQSRTV_ 0 0 0 ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8711853027344 3 392.872895 1175.59686 1.0727 0.00042143 -0.26429 -0.00010383 0.80841 0.0003176 392.8727621522021 34.35 0.62563 30.255 30.057 30.683 -4.0951 82 36 3 0 0 0 0.63534 1 20059 20059 7.846 2.5492 1 56262000 1453 4468 1027 1043 1598 1598 0.016082517946870212 ALNDEINFL 9 Unmodified _ALNDEINFL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7694702148438 2 524.769114 1047.52368 0.47254 0.00024797 0.57599 0.00030226 1.0485 0.00055024 524.7692647301574 79.736 0.41322 79.736 79.523 79.936 0 70 17 6 0 0 0 0.039985 2 44301 44206;44301 49.933 17.628 1 11216000 + 1454 199 1028 1044 1599;1600 1600 0.001814463437312952 ALNDEINFL 9 Unmodified _ALNDEINFL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7692260742188 2 524.769114 1047.52368 0.82126 0.00043097 1.9856 0.001042 2.8069 0.001473 524.7693056982714 80.234 0.5011 79.744 79.533 80.034 -0.48932 49 19 3 0 0 0 0.07916 1 43935 43935 37.974 24.068 1 2355300 + 1455 199 1028 1044 1601 1601 0.001814463437312952 ALNDEINFL 9 Unmodified _ALNDEINFL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.77099609375 2 524.769114 1047.52368 1.3335 0.00069977 -0.15018 -7.8808E-05 1.1833 0.00062096 524.7689754534306 87.955 0.40708 81.78 81.531 81.939 -6.1757 51 22 3 0 0 0 0.020973 2 57918 57918;58035 62.573 33.491 1 44165000 + 1456 199 1028 1044 1602;1603 1602 0.001814463437312952 ALNDQVFEI 9 Unmodified _ALNDQVFEI_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.771240234375 2 524.769114 1047.52368 0.88756 0.00046576 -0.19242 -0.00010098 0.69513 0.00036478 524.7690420876575 73.452 0.20342 73.452 73.365 73.568 0 14 10 2 0 0 0 0.32871 1 40889 40889 15.847 7.937 1 875920 1457 10153 1029 1045 1604 1604 0.001814463437312952 ALNDVLAIM 9 Unmodified _ALNDVLAIM_ 0 0 0 REV__ENSG00000176658|ENST00000318217|MYO1D REV__ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.5234985351562 1 959.52303 958.515753 1.0548 0.0010121 -0.25418 -0.00024389 0.80065 0.00076824 959.5228333555738 100.28 0.16019 94.1 93.996 94.157 -6.1757 16 9 2 0 0 0 0.0082661 1 66985 66985 92.491 3.5376 1 41142000 + 1458 22938 1030 1046 1605 1605 0.03483595822581265 ALNEEAGRLLL 11 Unmodified _ALNEEAGRLLL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8427734375 2 599.843145 1197.67174 0.08493 5.0945E-05 0.98844 0.00059291 1.0734 0.00064385 599.8436511309992 61.262 0.28763 61.262 61.123 61.411 0 29 12 3 0 0 0 0.13728 1 34132 34132 46.022 24.485 1 2143700 1459 2547 1031 1047 1606 1606 0.08080757597576849 ALNEEAGRLLL 11 Unmodified _ALNEEAGRLLL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.84423828125 2 599.843145 1197.67174 0.15146 9.0854E-05 0.24147 0.00014484 0.39293 0.0002357 599.8430881387055 61.669 0.27312 61.182 61.011 61.284 -0.48764 32 12 3 0 0 0 0.067723 1 33555 33555 57.249 33.229 1 3331900 1460 2547 1031 1047 1607 1607 0.08080757597576849 ALNEEAGRLLL 11 Unmodified _ALNEEAGRLLL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8428344726562 2 599.843145 1197.67174 -0.051767 -3.1052E-05 -0.36362 -0.00021812 -0.41539 -0.00024917 599.8431058985058 66.872 0.32372 60.696 60.519 60.843 -6.1757 29 17 2 0 0 0 0.00037182 1 43490 43490 107.56 63.791 1 16967000 1461 2547 1031 1047 1608 1608 0.08080757597576849 ALNEKLVNL 9 Unmodified _ALNEKLVNL_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3031921386719 2 507.303124 1012.5917 0.41406 0.00021005 0.23404 0.00011873 0.64809 0.00032878 507.3030949533881 51.713 0.28154 51.713 51.561 51.842 0 34 12 4 0 0 0 0.0087923 1 28578 28578 103.42 45.697 1 16908000 1462 8515 1032 1048 1609 1609 0.08590315994376851 ALNEKLVNL 9 Unmodified _ALNEKLVNL_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.302734375 2 507.303124 1012.5917 0.19549 9.9175E-05 0.41708 0.00021159 0.61257 0.00031076 507.3032922059839 52.14 0.34009 51.707 51.531 51.871 -0.43367 47 16 4 0 0 0 0.0081887 2 28117 28117;28220 93.166 33.797 1 14511000 1463 8515 1032 1048 1610;1611 1610 0.08590315994376851 ALNEKLVNL 9 Unmodified _ALNEKLVNL_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MSMS AL20221201_MKP_PDAC_01 4 507.302734375 2 507.303124 1012.5917 NaN NaN NaN NaN NaN NaN NaN 57.761 1 51.733 51.233 52.233 -6.0275 0 0 0 0.0098005 1 36960 36960 93.166 25.085 1 1464 8515 1032 1048 1612 1612 0.08590315994376851 ALNEKLVNL 9 Unmodified _ALNEKLVNL_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.303124 1012.5917 0.30519 0.00015483 0.47459 0.00024076 0.77978 0.00039559 507.30307609335773 51.8 0.16225 51.742 51.651 51.814 -0.058918 0.020942 0.00014515 NaN 93.166 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 826040 1465 8515 1032 1048 0.08590315994376851 ALNELLQHV 9 Unmodified _ALNELLQHV_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.79296875 2 518.792924 1035.57129 0.37113 0.00019254 -0.87571 -0.00045431 -0.50458 -0.00026177 518.7927752412891 61.959 0.37582 61.472 61.284 61.66 -0.48764 61 17 6 0 0 0 0.018301 1 33710 33710 65.235 34.598 1 18353000 1466 4898 1033 1049 1613 1613 0.05493145334571636 ALNELLQHV 9 Unmodified _ALNELLQHV_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7932739257812 2 518.792924 1035.57129 0.79865 0.00041433 -1.8898 -0.00098041 -1.0911 -0.00056608 518.7921278300552 67.073 0.65894 60.897 60.646 61.305 -6.1757 98 36 4 0 0 0 0.03568 2 43760 43618;43760 52.268 25.385 1 48633000 1467 4898 1033 1049 1614;1615 1615 0.05493145334571636 ALNEQIARL 9 Unmodified _ALNEQIARL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2984619140625 2 514.298373 1026.58219 0.73783 0.00037946 0.47783 0.00024574 1.2157 0.00062521 514.2986808909448 46.376 0.46666 46.376 46.232 46.698 0 41 21 3 0 0 0 0.0087923 1 25330 25330 103.42 36.963 1 11237000 1468 1311 1034 1050 1616 1616 0.0699654770885445 ALNEQIARL 9 Unmodified _ALNEQIARL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2979125976562 2 514.298373 1026.58219 0.51832 0.00026657 0.10286 5.29E-05 0.62118 0.00031947 514.2985272943484 46.583 0.27266 46.247 46.112 46.385 -0.33664 25 13 3 0 0 0 0.0044708 1 24922 24922 118.89 40.745 1 6915900 1469 1311 1034 1050 1617 1617 0.0699654770885445 ALNEQIARL 9 Unmodified _ALNEQIARL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MSMS AL20221201_MKP_PDAC_01 4 514.2999877929688 2 514.298373 1026.58219 NaN NaN NaN NaN NaN NaN NaN 51.982 1 46.247 45.747 46.747 -5.7345 0 0 0 0.0058553 1 32772 32772 125.53 36.626 1 1470 1311 1034 1050 1618 1618 0.0699654770885445 ALNGLTYFV 9 Unmodified _ALNGLTYFV_ 0 0 0 REV__ENST00000487841.5_1_6:166738023-166743732:-|nuORF REV__ENST00000487841.5_1_6:166738023-166743732:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2702941894531 2 499.271293 996.528032 NaN NaN NaN NaN NaN NaN NaN 88.828 1 88.323 87.823 88.823 -0.50423 0 0 0 0.7818 1 48576 48576 6.7232 0.96273 1 + 1471 24066 1035 1051 1619 1619 0.02962955557291025 ALNPSSVHLL 10 Unmodified _ALNPSSVHLL_ 0 0 0 REV__ENSG00000111262|ENST00000382545|KCNA1 REV__ENSG00000111262|ENST00000382545|KCNA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7771606445312 2 525.800749 1049.58694 0.79092 0.00041587 -3.9615 -0.002083 -3.1706 -0.0016671 526.3001501019759 57.008 0.080734 51.031 50.992 51.073 -5.9769 6 4 2 0 0 0 0.21809 1 36448 36448 24.991 13.496 1 10478000 + 1472 18742 1036 1052 1620 1620 0.06413431851638052 ALNQALVFL 9 Unmodified _ALNQALVFL_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7967224121094 2 494.794935 987.575317 1.3599 0.00067287 0.55261 0.00027343 1.9125 0.0009463 494.79537381465923 100.06 0.18585 93.884 93.792 93.978 -6.1757 17 11 2 0 0 0 0.023164 1 66869 66869 60.39 22.238 1 14884000 1473 339 1037 1053 1621 1621 0.08103234828286077 ALNQLPQV 8 Unmodified _ALNQLPQV_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000524925.1_1_11:77817969-77825348:-|nuORF ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7553405761719 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 28.63 1 28.63 28.13 29.13 0 0 0 0 0.85111 1 14797 14797 20.871 1.4322 1 1474 6622 1038 1054 1622 1622 0.05157802243036258 ALNSHAAAF 9 Unmodified _ALNSHAAAF_ 0 0 0 REV__nc|ENSG00000147162|O15294-2|OGT REV__nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2296752929688 2 451.229959 900.445365 -0.16238 -7.3272E-05 0.19864 8.9633E-05 0.036259 1.6361E-05 451.23012540847304 28.923 0.35969 28.923 28.723 29.082 0 27 17 2 0 0 0 0.23158 1 14951 14951 20.454 2.3186 1 1704200 + 1475 20873 1039 1055 1623 1623 -0.008839414508656773 ALNSKILSV 9 Unmodified _ALNSKILSV_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7922668457031 2 472.792392 943.570232 0.82981 0.00039233 -0.50024 -0.00023651 0.32957 0.00015582 472.7921757851279 49.574 0.21877 49.182 49.04 49.258 -0.3923 16 10 2 0 0 0 0.15471 1 26661 26661 27.629 7.1752 1 1872200 1476 2284 1040 1056 1624 1624 0.09618930965677919 ALNSKILSV 9 Unmodified _ALNSKILSV_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 472.792392 943.570232 0.34484 0.00016304 -0.93599 -0.00044253 -0.59115 -0.00027949 472.79224345724316 49.21 0.16632 49.166 49.049 49.215 -0.04369 -0.0077955 -0.00033799 NaN 27.629 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 698230 1477 2284 1040 1056 0.09618930965677919 ALNSNEEYNL 10 Unmodified _ALNSNEEYNL_ 0 0 0 ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENST00000467481.1_1_13:20233151-20235156:+|nuORF ENSG00000196199|ENST00000361479|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7680053710938 2 583.769842 1165.52513 -0.58711 -0.00034273 -2.549 -0.001488 -3.1361 -0.0018307 583.7683379625466 36.287 0.20302 36.037 35.906 36.109 -0.2497 15 8 3 0 0 0 0.5905 1 19028 19028 11.64 2.8949 1 2631800 1478 9777 1041 1057 1625 1625 -0.051009643581892306 ALNVVSKAF 9 Unmodified _ALNVVSKAF_ 0 0 0 REV__nc|ENSG00000073670|O75078-2|ADAM11 REV__nc|ENSG00000073670|O75078-2|ADAM11 MSMS AL20221201_MKP_PDAC_01 4 474.781005859375 2 474.779285 947.544017 NaN NaN NaN NaN NaN NaN NaN 49.811 1 44.272 43.772 44.772 -5.5391 0 0 0 0.39043 1 31161 31161 20.454 3.5113 1 + 1479 17539 1042 1058 1626 1626 0.06814661794192034 ALNWALTTLY 10 Unmodified _ALNWALTTLY_ 0 0 0 REV__ENSG00000172320|ENST00000641045|OR5A1 REV__ENSG00000172320|ENST00000641045|OR5A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3185424804688 2 583.316232 1164.61791 0.44657 0.00026049 -0.81946 -0.000478 -0.37289 -0.00021751 583.3160250383837 57.947 0.99964 51.919 51.666 52.665 -6.0275 186 55 4 0 0 0 0.49559 1 37398 37398 25.399 13.159 1 93445000 + 1480 22642 1043 1059 1627 1627 0.042185851658587126 ALPAAFHTW 9 Unmodified _ALPAAFHTW_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2644653320312 2 507.263802 1012.51305 NaN NaN NaN NaN NaN NaN NaN 60.916 1 60.873 60.373 61.373 -0.04351 0 0 0 0.026323 1 33233 33233 70.716 14.667 1 1481 10049 1044 1060 1628 1628 0.007295084799466167 ALPALYIHSF 10 Unmodified _ALPALYIHSF_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2107849121094 3 377.878087 1130.61243 -0.2803 -0.00010592 0.085316 3.2239E-05 -0.19498 -7.368E-05 377.87802551308584 61.023 0.25934 60.533 60.395 60.654 -0.48932 32 12 3 0 0 0 0.56675 1 33198 33198 12.873 0.69786 1 12003000 + 1482 20965 1045 1061 1629 1629 0.05234906374039383 ALPALYIHSF 10 Unmodified _ALPALYIHSF_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8777465820312 3 377.878087 1130.61243 0.30541 0.00011541 0.20956 7.9188E-05 0.51497 0.0001946 377.87811951643096 60.643 0.30823 60.599 60.457 60.765 -0.04351 44 15 4 0 0 0 0.64183 1 33152 33152 8.9762 0 1 72554000 + 1483 20965 1045 1061 1630 1630 0.05234906374039383 ALPALYIHSF 10 Unmodified _ALPALYIHSF_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8780517578125 3 377.878087 1130.61243 1.2512 0.00047282 -0.071034 -2.6842E-05 1.1802 0.00044598 377.8779198425842 90.203 0.40826 84.027 83.848 84.257 -6.1757 61 23 3 0 0 0 0.64183 1 59515 59515 8.9762 0 1 93556000 + 1484 20965 1045 1061 1631 1631 0.05234906374039383 ALPDDLVEV 9 Unmodified _ALPDDLVEV_ 0 0 0 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 MSMS AL20221201_MKP_PDAC_01 4 485.7575073242188 2 485.758215 969.501877 NaN NaN NaN NaN NaN NaN NaN 77.559 1 71.383 70.883 71.883 -6.1757 0 0 0 0.23581 1 50735 50735 28.487 5.3384 1 1485 3539 1046 1062 1632 1632 0.015906415951462805 ALPEAHHYL 9 Unmodified _ALPEAHHYL_ 0 0 0 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 MSMS AL20221201_MKP_PDAC_01 4 350.8510131835938 3 350.85042 1049.52943 NaN NaN NaN NaN NaN NaN NaN 41.427 1 36.819 36.319 37.319 -4.6079 0 0 0 0.61214 1 24876 24876 12.241 0 1 + 1486 23040 1047 1063 1633 1633 0.006645896460213407 ALPECFGTTD 10 Unmodified _ALPECFGTTD_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.8233947753906 3 351.82343 1052.44846 0.50241 0.00017676 -0.00054328 -1.9114E-07 0.50187 0.00017657 351.8233577230623 64.631 0.27982 64.146 64.014 64.294 -0.48512 22 12 2 0 0 0 0.67033 1 35251 35251 3.3196 0 1 1522100 1487 7148 1048 1064 1634 1634 -0.07566479179035923 ALPEDLVEV 9 Unmodified _ALPEDLVEV_ 0 0 0 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000136167|P13796-2|LCP1;ENSG00000136167|ENST00000323076|LCP1 nc|ENSG00000102024|P13797-2|PLS3 nc|ENSG00000102024|P13797-2|PLS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7683410644531 2 492.76604 983.517527 -0.21497 -0.00010593 2.8846 0.0014214 2.6696 0.0013155 492.7679153783385 71.107 0.82241 71.107 70.895 71.717 0 62 38 2 0 0 0 0.28047 2 39641 39641;39742 18.135 1.304 1 1535300 1488 2010 1049 1065 1635;1636 1635 0.025109281121899585 ALPEGLPEA 9 Unmodified _ALPEGLPEA_ 0 0 0 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.73974609375 2 448.739825 895.465098 0.60757 0.00027264 -0.23752 -0.00010658 0.37005 0.00016606 448.73972616685825 53.091 0.46775 53.091 52.836 53.304 0 44 21 3 0 0 0 0.2143 1 29405 29405 21.747 1.293 1 2010700 1489 4217 1050 1066 1637 1637 0.013183897692329083 ALPFEDPDGF 10 Unmodified _ALPFEDPDGF_ 0 0 0 REV__ENSG00000090470|ENST00000204549|PDCD7 REV__ENSG00000090470|ENST00000204549|PDCD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.254150390625 2 554.253297 1106.49204 0.69375 0.00038451 0.40634 0.00022522 1.1001 0.00060973 554.2533735657586 74.571 0.35045 74.571 74.365 74.716 0 20 15 2 0 0 0 0.69064 1 41467 41467 3.9444 0.94915 1 848950 + 1490 17859 1051 1067 1638 1638 -0.05694546410222756 ALPFEDPDGF 10 Unmodified _ALPFEDPDGF_ 0 0 0 REV__ENSG00000090470|ENST00000204549|PDCD7 REV__ENSG00000090470|ENST00000204549|PDCD7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 554.253297 1106.49204 0.69375 0.00038451 0.40634 0.00022522 1.1001 0.00060973 554.2533735657586 74.571 0.35045 74.571 74.365 74.716 0 0 0 NaN 3.9444 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 848950 + 1491 17859 1051 1067 -0.05694546410222756 ALPFLSPEG 9 Unmodified _ALPFLSPEG_ 0 0 0 REV__ENST00000592904.5_1_19:9524750-9525065:-|nuORF REV__ENST00000592904.5_1_19:9524750-9525065:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2511901855469 2 465.750193 929.485833 0.67365 0.00031375 -0.31115 -0.00014492 0.36249 0.00016883 465.75112104617443 101.84 0.37488 95.668 95.582 95.957 -6.1757 56 21 3 0 0 0 0.53666 1 68449 68449 5.2307 2.3415 1 20428000 + 1492 29185 1052 1068 1639 1639 0.01826980148905477 ALPGSFFLI 9 Unmodified _ALPGSFFLI_ 0 0 0 ENSG00000151715|ENST00000281441|TMEM45B;ENST00000527754.1_1_11:129698120-129727360:+|nuORF;TMEM45B|p.G18E|1|0.28|ENSG00000151715|chr11:129852535-129852535|G/A|missense_variant;ENST00000529381.1_1_11:129685783-129722578:+|nuORF ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.551513671875 1 964.550231 963.542954 0.60638 0.00058488 0.76819 0.00074095 1.3746 0.0013258 964.550555128288 101.67 0.095123 95.493 95.429 95.524 -6.1757 11 4 3 0 0 0 0.010877 1 68221 68221 77.984 10.64 1 22870000 1493 6141 1053 1069 1640 1640 0.05972447425290284 ALPGSLVQLM 10 Unmodified _ALPGSLVQLM_ 0 0 0 REV__ENST00000375571.5_1_20:31437522-31437645:+|nuORF REV__ENST00000375571.5_1_20:31437522-31437645:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7944946289062 2 514.794078 1027.5736 0.94679 0.0004874 0.53348 0.00027463 1.4803 0.00076203 514.7939519977112 48.514 0.44713 43.118 42.871 43.318 -5.3961 68 26 4 0 0 0 0.48834 1 30261 30261 16.942 1.0951 1 108620000 + 1494 26205 1054 1070 1641 1641 0.06091857747992435 ALPHPLSA 8 Unmodified _ALPHPLSA_ 0 0 0 ENST00000395105.8_1_15:74471910-74472126:-|nuORF ENST00000395105.8_1_15:74471910-74472126:-|nuORF ENST00000395105.8_1_15:74471910-74472126:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.209228515625 2 403.231971 804.449388 1.6164 0.00065177 -0.016438 -6.6282E-06 1.5999 0.00064514 403.2320356886403 47.543 0.3735 42.309 42.123 42.496 -5.2339 27 21 2 0 0 0 8.7369 1 29634 29634 20.871 6.2895 1 7139300 1495 12760 1055 1071 1642 1642 0.039341480428561226 ALPHVVPTL 9 Unmodified _ALPHVVPTL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7897033691406 2 473.789653 945.564752 NaN NaN NaN NaN NaN NaN NaN 61.717 1 61.229 60.729 61.729 -0.48764 0 0 0 0.18911 1 33617 33617 32.117 0 1 1496 7248 1056 1072 1643 1643 0.08979252173844543 ALPKELPLI 9 Unmodified _ALPKELPLI_ 0 0 0 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.3211364746094 2 497.320786 992.627018 0.51624 0.00025674 0.79514 0.00039544 1.3114 0.00065218 497.32107041523665 71.814 0.42451 71.338 71.147 71.572 -0.47609 46 16 4 0 0 0 0.08691 1 39253 39253 36.127 2.0246 1 5595000 1497 2334 1057 1073 1644 1644 0.13040978522201385 ALPLSVAPLI 10 Unmodified _ALPLSVAPLI_ 0 0 0 ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.3214111328125 2 497.320786 992.627018 0.51624 0.00025674 0.79514 0.00039544 1.3114 0.00065218 497.32107041523665 71.814 0.42451 71.338 71.147 71.572 -0.47609 46 16 4 0 0 0 0.14917 1 39352 39352 39.957 3.8303 1 5595000 1498 10318 1058 1074 1645 1645 0.13040978522178648 ALPLSVAPLI 10 Unmodified _ALPLSVAPLI_ 0 0 0 ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L ENSG00000204687|ENST00000377127|MAS1L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.320786 992.627018 1.1552 0.00057451 2.6547 0.0013202 3.8099 0.0018947 497.3222678415133 71.266 0.27673 71.305 71.13 71.407 0.039024 -0.016354 0.0016723 NaN 39.957 22 11 2 NaN NaN NaN NaN 0 NaN NaN 0 920970 1499 10318 1058 1074 0.13040978522178648 ALPMHLWP 8 Unmodified _ALPMHLWP_ 0 0 0 REV__ENST00000593607.1_1_19:54120057-54120405:+|nuORF REV__ENST00000593607.1_1_19:54120057-54120405:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7315063476562 2 482.757298 963.500044 0.085012 4.104E-05 -2.1794 -0.0010521 -2.0944 -0.0010111 482.75574914137337 70.32 0.2708 70.32 70.203 70.474 0 17 10 2 0 0 0 8.7369 1 39239 39239 6.3541 0.59368 1 596410 + 1500 29195 1059 1075 1646 1646 0.016833540961897597 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.783935546875 2 455.784036 909.553519 0.32699 0.00014904 -1.3437 -0.00061246 -1.0168 -0.00046342 455.7841321427902 75.951 0.59962 75.474 75.19 75.789 -0.47714 64 25 3 0 0 0 0.078417 1 41499 41499 38.151 7.9264 1 4731300 1501 6391 1060 1076 1647 1647 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.5588989257812 1 910.560795 909.553519 0.038658 3.52E-05 0.018015 1.6403E-05 0.056672 5.1604E-05 910.5609984127641 75.938 0.47763 75.461 75.235 75.712 -0.47714 39 20 2 0 0 0 0.06187 1 41603 41603 42.095 7.9921 1 1744600 1502 6391 1060 1076 1648 1648 0.09512430079689693 ALPPVLTTV 9 Unmodified _ALPPVLTTV_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.5629272460938 1 910.560795 909.553519 0.52471 0.00047778 -0.27928 -0.00025431 0.24543 0.00022348 910.5607334082329 83.048 0.48557 76.873 76.661 77.146 -6.1757 42 26 2 0 0 0 0.0077963 2 54671 54523;54671 109.63 20.202 1 12696000 1503 6391 1060 1076 1649;1650 1650 0.09512430079689693 ALPRGFPVT 9 Unmodified _ALPRGFPVT_ 0 0 0 ENST00000502536.5_1_5:38845996-38846116:+|nuORF ENST00000502536.5_1_5:38845996-38846116:+|nuORF ENST00000502536.5_1_5:38845996-38846116:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2541198730469 2 479.279452 956.544351 -0.0055876 -2.678E-06 0.08407 4.0293E-05 0.078482 3.7615E-05 479.2794751723837 56.421 0.32612 56.352 56.212 56.538 -0.068737 38 16 3 0 0 0 0.18521 1 30626 30626 16.942 1.1741 1 20777000 1504 14454 1061 1077 1651 1651 0.0643408151404401 ALPRVLRPRR 10 Unmodified _ALPRVLRPRR_ 0 0 0 ENST00000261888.10_1_15:65578609-65578774:-|nuORF ENST00000261888.10_1_15:65578609-65578774:-|nuORF ENST00000261888.10_1_15:65578609-65578774:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.4005737304688 2 617.404373 1232.79419 NaN NaN NaN NaN NaN NaN NaN 104.05 1 104 103.5 104.5 -0.048737 0 0 0 0.97302 1 57775 57775 3.5965 1.9439 1 1505 11254 1062 1078 1652 1652 0.18710683910308035 ALPSAGLFVL 10 Unmodified _ALPSAGLFVL_ 0 0 0 ENST00000354992.6_1_22:33669094-33669349:-|nuORF ENST00000354992.6_1_22:33669094-33669349:-|nuORF ENST00000354992.6_1_22:33669094-33669349:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2975769042969 2 494.29731 986.580068 1.3367 0.00066074 0.12622 6.2389E-05 1.4629 0.00072313 494.2971962666799 101.07 0.12521 94.899 94.831 94.956 -6.1757 13 6 3 0 0 0 0.14917 1 67769 67769 39.957 0 1 21395000 1506 12070 1063 1079 1653 1653 0.08624118971056305 ALPSGTRF 8 Unmodified _ALPSGTRF_ 0 0 0 REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7356872558594 2 424.734877 847.455202 1.0347 0.00043949 0.44413 0.00018864 1.4789 0.00062813 424.73520010180374 46.434 0.24282 46.4 46.286 46.529 -0.033417 17 11 2 0 0 0 0.75262 1 24988 24988 12.532 0.89125 1 1364500 + 1507 27750 1064 1080 1654 1654 0.02537246554527428 ALPSKLPTF 9 Unmodified _ALPSKLPTF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2900085449219 2 487.289485 972.564418 0.13087 6.3773E-05 -0.086149 -4.198E-05 0.044723 2.1793E-05 487.2894847685904 60.421 0.34085 59.93 59.746 60.087 -0.49079 38 16 3 0 0 0 0.024882 2 32842 32842;32942 58.679 14.272 1 27859000 1508 3564 1065 1081 1655;1656 1655 0.0770383245398989 ALPSKLPTF 9 Unmodified _ALPSKLPTF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2899475097656 2 487.289485 972.564418 0.51745 0.00025215 -0.37274 -0.00018163 0.14471 7.0518E-05 487.289203837233 60.039 0.54539 59.986 59.714 60.259 -0.053059 104 28 5 0 0 0 0.015445 3 32632 32632;32728;32834 68.081 23.674 1 613840000 1509 3564 1065 1081 1657;1658;1659 1657 0.0770383245398989 ALPSKLPTF 9 Unmodified _ALPSKLPTF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2896118164062 2 487.289485 972.564418 0.34689 0.00016904 0.01789 8.7175E-06 0.36478 0.00017775 487.2894718130167 65.676 1.4735 59.501 58.968 60.441 -6.1757 257 84 4 0 0 0 0.020973 7 42577 42434;42456;42577;42715;42852;42989;43129 62.573 22.615 1 1269100000 1510 3564 1065 1081 1660;1661;1662;1663;1664;1665;1666 1662 0.0770383245398989 ALPSKLPTF 9 Unmodified _ALPSKLPTF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 973.5711059570312 1 973.571694 972.564418 -0.068103 -6.6303E-05 -0.16362 -0.0001593 -0.23173 -0.0002256 973.5713118458716 65.65 0.40459 59.475 59.304 59.709 -6.1757 36 23 2 0 0 0 0.0061279 2 42578 42578;42714 114.19 32.573 1 23750000 1511 3564 1065 1081 1667;1668 1667 0.0770383245398989 ALPSKVPAF 9 Unmodified _ALPSKVPAF_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;nc|ENSG00000166526|P17036-2|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.27587890625 2 465.276378 928.538203 -0.2406 -0.00011195 0.61084 0.00028421 0.37024 0.00017226 465.27661453110125 51.539 0.16582 51.125 51.046 51.212 -0.41351 14 8 2 0 0 0 0.095405 1 27801 27801 34.102 9.4286 1 4484200 1512 7504 1066 1082 1669 1669 0.07107563282522733 ALPSVLLEL 9 Unmodified _ALPSVLLEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF;BIRC6|p.L4364F|1|0.09|ENSG00000115760|chr2:32549427-32549427|C/T|missense_variant ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.797607421875 2 477.797143 953.579734 0.44942 0.00021473 0.40747 0.00019469 0.85689 0.00040942 477.79740154112187 99.723 0.11676 99.566 99.496 99.613 -0.1575 9 3 3 0 0 0 0.087258 1 54450 54450 36.044 1.9418 1 2782800 1513 3160 1067 1083 1670 1670 0.10108699251179587 ALPYFWEHF 9 Unmodified _ALPYFWEHF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.2905883789062 2 605.290017 1208.56548 0.26696 0.00016159 -0.13703 -8.2943E-05 0.12993 7.8643E-05 605.2899617621413 98.605 0.18217 92.429 92.338 92.52 -6.1757 34 13 3 0 0 0 0.0094915 1 65393 65393 81.864 66.017 1 130260000 1514 10781 1068 1084 1671 1671 -0.03045953177092997 ALQALVVTL 9 Unmodified _ALQALVVTL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2989807128906 2 464.29731 926.580068 0.36774 0.00017074 2.0713 0.00096171 2.4391 0.0011325 464.29826534752095 85.916 0.3167 85.414 85.229 85.546 -0.5015 25 12 3 0 0 0 0.06187 1 46996 46996 42.095 18.946 1 560750 1515 3070;16132 1069 1085 1672 1672 0.1138411897103424 ALQAMKWLNES 11 Unmodified _ALQAMKWLNES_ 0 0 0 REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8886108398438 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 46.877 1 46.541 46.041 47.041 -0.33664 0 0 0 0.93933 1 25109 25109 1.2148 0 1 + 1516 26899 1070 1086 1673 1673 0.010571113458127002 ALQDRVPLA 9 Unmodified _ALQDRVPLA_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7877502441406 2 491.787641 981.56073 -0.26409 -0.00012988 -0.62042 -0.00030512 -0.88452 -0.000435 491.7877170719101 41.679 0.30754 41.679 41.538 41.846 0 37 15 3 0 0 0 0.062454 2 22486 22486;22597 41.956 16.556 1 18116000 1517 9571 1071 1087 1674;1675 1674 0.06921162680134785 ALQDRVPLA 9 Unmodified _ALQDRVPLA_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7879028320312 2 491.787641 981.56073 1.1179 0.00054975 -0.54651 -0.00026877 0.57136 0.00028099 491.7873021479092 47.343 0.4105 42.262 42.053 42.463 -5.0805 61 26 3 0 0 0 0.044296 2 29372 29372;29509 47.594 21.326 1 57408000 1518 9571 1071 1087 1676;1677 1676 0.06921162680134785 ALQEELTEL 9 Unmodified _ALQEELTEL_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7802734375 2 523.274229 1044.53391 0.4561 0.00023867 3.4183 0.0017887 3.8744 0.0020274 523.2751725624798 63.153 0.23624 63.153 63.008 63.244 0 21 9 3 0 0 0 0.49272 1 35237 35237 7.9102 1.5561 1 1132100 1519 2170 1072 1088 1678 1678 0.013420092782780557 ALQEKALACI 10 Unmodified _ALQEKALACI_ 0 0 0 nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-5|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.7711791992188 2 530.296985 1058.57942 0.95942 0.00050878 -0.032577 -1.7276E-05 0.92685 0.0004915 530.2973814735259 61.796 0.39371 55.62 55.367 55.76 -6.1757 43 20 3 0 0 0 0.22327 1 39705 39705 12.532 5.2423 1 32843000 1520 6089 1073 1089 1679 1679 0.052469562596797914 ALQEKLWNV 9 Unmodified _ALQEKLWNV_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8079833984375 2 550.808574 1099.60259 -0.88566 -0.00048783 0.010795 5.9462E-06 -0.87486 -0.00048188 550.8083487828663 56.263 0.1552 55.778 55.708 55.863 -0.48554 14 7 2 0 0 0 0.010611 1 30548 30548 78.728 27.098 1 3629800 1521 5997 1074 1090 1680 1680 0.05677718368656315 ALQELVELI 9 Unmodified _ALQELVELI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3060913085938 2 514.305332 1026.59611 1.4726 0.00075734 -0.48973 -0.00025187 0.98282 0.00050547 514.3054743951359 46.633 0.2604 46.599 46.452 46.712 -0.033417 27 12 3 0 0 0 0.25681 1 25062 25062 19.257 1.122 1 5621600 1522 8194 1075 1091 1681 1681 0.08387780417297108 ALQEMVHQV 9 Oxidation (M) _ALQEM(Oxidation (M))VHQV_ ALQEM(1)VHQV ALQEM(59)VHQV 0 0 1 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7669677734375 2 535.768591 1069.52263 -0.29974 -0.00016059 -0.89495 -0.00047949 -1.1947 -0.00064008 535.7681202578456 26.176 0.21599 26.176 26.067 26.283 0 22 12 2 0 0 0 0.024882 1 13439 13439 58.679 24.576 1 4936300 1523 2837 1076 1092 1682 1682 495 -0.009350912968329794 ALQEMVHQV 9 Oxidation (M) _ALQEM(Oxidation (M))VHQV_ ALQEM(1)VHQV ALQEM(50)VHQV 0 0 1 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7689208984375 2 535.768591 1069.52263 -0.35177 -0.00018847 0.8496 0.00045519 0.49783 0.00026672 535.7692769966981 26.632 0.23139 26.632 26.508 26.74 0 17 10 3 0 0 0 0.039985 1 13720 13720 49.933 23.049 1 2217700 1524 2837 1076 1092 1683 1683 495 -0.009350912968329794 ALQEMVHQV 9 Oxidation (M) _ALQEM(Oxidation (M))VHQV_ ALQEM(1)VHQV ALQEM(50)VHQV 0 0 1 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7686767578125 2 535.768591 1069.52263 0.88449 0.00047388 0.90531 0.00048503 1.7898 0.00095892 535.7693158000716 30.371 0.29119 26.874 26.718 27.009 -3.497 19 14 2 0 0 0 0.039985 1 17182 17182 49.933 21.446 1 11575000 1525 2837 1076 1092 1684 1684 495 -0.009350912968329794 ALQESIPDI 9 Unmodified _ALQESIPDI_ 0 0 0 nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM nc|ENSG00000023909|P48507-2|GCLM nc|ENSG00000023909|P48507-2|GCLM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2634887695312 2 493.263665 984.512776 0.076048 3.7512E-05 -0.12046 -5.9416E-05 -0.044407 -2.1905E-05 493.26356741467396 61.784 0.26609 61.784 61.641 61.907 0 30 11 3 0 0 0 0.031062 1 34418 34418 54.774 2.5052 1 4448900 1526 549 1077 1093 1685 1685 0.01990043969431099 ALQESLVQI 9 Unmodified _ALQESLVQI_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7876892089844 2 500.787307 999.560061 0.45555 0.00022814 0.72999 0.00036557 1.1855 0.0005937 500.7876935172574 66.109 0.3017 66.109 65.959 66.26 0 26 14 2 0 0 0 0.070838 1 36824 36824 39.957 7.6518 1 4500800 1527 9101;16441 1078 1094 1686 1686 0.060263232404167866 ALQEVLKTA 9 Unmodified _ALQEVLKTA_ 0 0 0 ENSG00000112306|ENST00000230050|RPS12;ENST00000484616.2_1_6:133135907-133136327:+|nuORF ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.8720703125 2 486.78985 971.565146 NaN NaN NaN NaN NaN NaN NaN 39.666 1 39.666 39.166 40.166 0 0 0 0 0.83812 1 21272 21272 2.9952 0.10602 1 1528 2882 1079 1095 1687 1687 0.07822627103053037 ALQGTYLHPL 10 Unmodified _ALQGTYLHPL_ 0 0 0 ENST00000514301.1_1_4:100786953-100787040:+|nuORF ENST00000514301.1_1_4:100786953-100787040:+|nuORF ENST00000514301.1_1_4:100786953-100787040:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8492736816406 3 371.541475 1111.60259 0.61387 0.00022808 1.4751 0.00054807 2.089 0.00077614 371.54192007072186 47.608 0.3694 47.255 47.105 47.474 -0.3526 30 17 2 0 0 0 0.23566 1 25629 25629 1.9064 0 1 6953000 1529 14651 1080 1096 1688 1688 0.051257183686630015 ALQGTYLHPL 10 Unmodified _ALQGTYLHPL_ 0 0 0 ENST00000514301.1_1_4:100786953-100787040:+|nuORF ENST00000514301.1_1_4:100786953-100787040:+|nuORF ENST00000514301.1_1_4:100786953-100787040:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 371.541475 1111.60259 0.29489 0.00010956 2.0099 0.00074677 2.3048 0.00085634 371.54213147926436 47.351 0.36618 47.351 47.171 47.537 0 0.053023 0.00025981 NaN 1.9064 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 9953700 1530 14651 1080 1096 0.051257183686630015 ALQKRLDEV 9 Unmodified _ALQKRLDEV_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.3119506835938 2 536.31148 1070.60841 -0.15343 -8.2288E-05 0.84979 0.00045575 0.69635 0.00037346 536.31191414565 23.948 0.14347 23.948 23.873 24.016 0 15 6 3 0 0 0 0.10247 1 12222 12222 32.786 3.7041 1 1025700 1531 3894 1081 1097 1689 1689 0.07592816880332975 ALQKRLDEV 9 Unmodified _ALQKRLDEV_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MSMS AL20221201_MKP_PDAC_01 4 536.311767578125 2 536.31148 1070.60841 NaN NaN NaN NaN NaN NaN NaN 27.223 1 24.186 23.686 24.686 -3.0365 0 0 0 0.08368 1 15069 15069 47.594 16.326 1 1532 3894 1081 1097 1690 1690 0.07592816880332975 ALQLSVEEF 9 Unmodified _ALQLSVEEF_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2938232421875 2 518.27149 1034.52843 0.19387 0.00010048 -2.5841 -0.0013393 -2.3902 -0.0012388 518.7719467494427 76.157 0.2636 75.677 75.571 75.835 -0.47945 13 10 2 0 0 0 0.20727 1 41651 41651 7.9102 1.5561 1 214900 1533 1031 1082 1098 1691 1691 0.012543304864720994 ALQPGTSAAL 10 Unmodified _ALQPGTSAAL_ 0 0 0 REV__nc|ENSG00000135248|Q96KD3-3|GARIN1B REV__nc|ENSG00000135248|Q96KD3-3|GARIN1B MSMS AL20221201_MKP_PDAC_01 4 464.7594299316406 2 464.758549 927.502546 NaN NaN NaN NaN NaN NaN NaN 62.7 1 56.525 56.025 57.025 -6.1757 0 0 0 0.51756 1 40473 40473 25.399 3.6527 1 + 1534 20047 1083 1099 1692 1692 0.03589481034839537 ALQRAAWGI 9 Unmodified _ALQRAAWGI_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2864074707031 2 493.282526 984.550499 0.9233 0.00045545 3.6552 0.001803 4.5785 0.0022585 493.2832567275377 32.165 0.48737 28.322 28.06 28.547 -3.8421 37 27 2 0 0 0 0.087258 1 18280 18280 36.044 3.9272 1 14101000 1535 9277 1084 1100 1693 1693 0.05760599745565287 ALQRQFEY 8 Unmodified _ALQRQFEY_ 0 0 0 ENST00000570209.1_1_15:31127242-31129800:+|nuORF;ENSG00000128731|ENST00000261609|HERC2 ENST00000570209.1_1_15:31127242-31129800:+|nuORF;ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.77197265625 2 527.769448 1053.52434 0.60371 0.00031862 1.3182 0.00069572 1.9219 0.0010143 527.7701372265883 44.852 0.67592 40 39.557 40.233 -4.852 96 50 2 0 0 0 0.37649 1 27571 27571 46.921 4.8263 1 44678000 1536 4088;15474 1085 1101 1694 1694 -0.00027714216571439465 ALQSLLHLL 9 Unmodified _ALQSLLHLL_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.3157348632812 2 504.316035 1006.61752 0.51217 0.00025829 -0.044247 -2.2315E-05 0.46792 0.00023598 504.31572493938086 90.011 0.19156 90.053 89.94 90.131 0.042175 10 6 2 0 0 0 0.016184 1 50102 50102 67.344 16.489 1 5297100 1537 3014 1086 1102 1695 1695 0.11447210236678984 ALQTIQLFL 9 Unmodified _ALQTIQLFL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.8184814453125 2 523.815867 1045.61718 4.1347 0.0021658 0.4648 0.00024347 4.5995 0.0024093 523.8157499933437 98.905 0.17203 98.877 98.776 98.948 -0.028282 12 5 3 0 0 0 0.39863 1 54961 54961 12.532 3.1484 1 2077500 1538 6155;16276 1087 1103 1696 1696 0.0961979051680828 ALQTSSPYKQA 11 Unmodified _ALQTSSPYKQA_ 0 0 0 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 MSMS AL20221201_MKP_PDAC_01 4 597.3091430664062 2 597.311677 1192.6088 NaN NaN NaN NaN NaN NaN NaN 46.947 1 41.866 41.366 42.366 -5.0805 0 0 0 0.75116 1 29082 29082 14.405 0.79051 1 1539 5223 1088 1104 1697 1697 0.02020191809538119 ALQYGQRCYC 10 Unmodified _ALQYGQRCYC_ 0 0 0 REV__ENSG00000163520|ENST00000404922|FBLN2 REV__ENSG00000163520|ENST00000404922|FBLN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1806640625 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 2.837 1 2.837 2.337 3.337 0 0 0 0 1.0024 1 1375 1375 0.13989 0 1 + 1540 21777 1089 1105 1698 1698 -0.07711932799998067 ALRARVQHVF 10 Unmodified _ALRARVQHVF_ 0 0 0 REV__ENST00000571834.5_1_17:7195323-7196846:-|nuORF REV__ENST00000571834.5_1_17:7195323-7196846:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5730895996094 3 399.57188 1195.69381 0.58488 0.0002337 2.0238 0.00080866 2.6087 0.0010424 399.5727336070784 47.38 0.2402 47.342 47.237 47.477 -0.038647 17 10 2 0 0 0 0.70895 1 25553 25553 1.9064 0.31409 1 2339200 + 1541 28980 1090 1106 1699 1699 0.10379026856639939 ALRDVSEEL 9 Unmodified _ALRDVSEEL_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2716064453125 2 516.272021 1030.52949 0.42894 0.00022145 -0.4015 -0.00020728 0.02744 1.4166E-05 516.2717997626701 39.212 0.34498 39.212 39.036 39.381 0 42 16 3 0 0 0 0.017075 1 20962 20962 66.457 22.598 1 30843000 1542 1391 1091 1107 1700 1700 0.01544544855391905 ALRDVSEEL 9 Unmodified _ALRDVSEEL_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2725219726562 2 516.272021 1030.52949 0.41741 0.0002155 2.9438 0.0015198 3.3612 0.0017353 516.2717622240798 45.135 0.82295 40.283 39.73 40.553 -4.852 157 60 4 0 0 0 0.025842 2 27649 27649;27795 57.722 15.627 1 83894000 1543 1391 1091 1107 1701;1702 1701 0.01544544855391905 ALREAERF 8 Unmodified _ALREAERF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2699890136719 2 496.269616 990.524678 NaN NaN NaN NaN NaN NaN NaN 35.936 1 35.936 35.436 36.436 0 0 0 0 0.38147 1 19028 19028 56.177 20.05 1 1544 4592 1092 1108 1703 1703 0.029037055032858916 ALREPGKAL 9 Unmodified _ALREPGKAL_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2913818359375 2 477.790184 953.565815 0.32664 0.00015607 0.089486 4.2756E-05 0.41613 0.00019882 477.79021250748525 24.429 0.30958 21.602 21.469 21.778 -2.8273 28 17 2 0 0 0 0.033587 2 13267 13267;13377 53.404 26.52 1 5541400 1545 8007 1093 1109 1704;1705 1704 0.08717466542748298 ALREQARDL 9 Unmodified _ALREQARDL_ 0 0 0 REV__nc|ENSG00000143549|P06753-5|TPM3;REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF REV__nc|ENSG00000143549|P06753-5|TPM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8680725097656 3 357.868362 1070.58326 -0.58789 -0.00021039 0.1332 4.7669E-05 -0.45469 -0.00016272 357.8682927864548 16.604 0.12828 16.604 16.529 16.657 0 57 34 2 0 0 0 0.51218 1 8112 8112 4.1895 0 1 1002600 + 1546 20651;28832 1094 1110 1706 1706 0.050787620777555276 ALRGLGVLL 9 Unmodified _ALRGLGVLL_ 0 0 0 ENST00000491028.1_1_13:113745283-113749039:+|nuORF ENST00000491028.1_1_13:113745283-113749039:+|nuORF ENST00000491028.1_1_13:113745283-113749039:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.3065490722656 2 456.30547 910.596387 0.8846 0.00040365 0.33204 0.00015151 1.2166 0.00055516 456.30545786105944 92.526 0.35268 86.35 86.166 86.519 -6.1757 28 20 2 0 0 0 0.023164 1 61273 61273 60.39 9.5345 1 12191000 1547 14273 1095 1111 1707 1707 0.137512449278006 ALRGRNVP 8 Unmodified _ALRGRNVP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-6|SAMD11 REV__nc|ENSG00000187634|Q96NU1-6|SAMD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7674255371094 2 441.767043 881.519533 0.062752 2.7722E-05 0.16763 7.4052E-05 0.23038 0.00010177 441.7669611319193 36.465 0.24118 36.486 36.295 36.536 0.021545 17 10 2 0 0 0 0.72953 1 19290 19290 14.582 0 1 2575200 + 1548 23647 1096 1112 1708 1708 0.07403446431317207 ALRGRNVP 8 Unmodified _ALRGRNVP_ 0 0 0 REV__nc|ENSG00000187634|Q96NU1-6|SAMD11 REV__nc|ENSG00000187634|Q96NU1-6|SAMD11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7674865722656 2 441.767043 881.519533 1.2426 0.00054893 -0.12636 -5.5821E-05 1.1162 0.00049311 441.76709146742456 40.78 0.30788 36.25 36.097 36.405 -4.5294 27 18 2 0 0 0 0.74163 1 24371 24371 13.508 0.97634 1 7322500 + 1549 23647 1096 1112 1709 1709 0.07403446431317207 ALRHRQEYDE 10 Unmodified _ALRHRQEYDE_ 0 0 0 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.5493774414062 3 439.54958 1315.62691 -0.44841 -0.0001971 -0.69804 -0.00030682 -1.1464 -0.00050392 439.54929976757194 27.232 0.22097 27.232 27.12 27.341 0 18 10 2 0 0 0 0.69917 1 13995 13995 1.4551 0.24029 1 3611500 1550 2552 1097 1113 1710 1710 -0.018276732157801234 ALRKPAVS 8 Unmodified _ALRKPAVS_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.5275268554688 1 841.525413 840.518136 1.5164 0.0012761 1.157 0.00097366 2.6735 0.0022498 841.5262165235002 105.87 0.31022 99.69 99.535 99.845 -6.1757 63 36 2 0 0 0 0.80992 1 70937 70937 0.69038 0 1 3031200 1551 4070 1098 1114 1711 1711 0.09149812342559471 ALRNAHNLQ 9 Unmodified _ALRNAHNLQ_ 0 0 0 REV__ENSG00000133020|ENST00000403437|MYH8 REV__ENSG00000133020|ENST00000403437|MYH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7865600585938 2 518.785964 1035.55738 0.51526 0.00026731 1.5331 0.00079533 2.0483 0.0010626 518.7866621724787 74.791 0.3823 74.791 74.582 74.965 0 45 18 3 0 0 0 0.06187 1 41580 41580 42.095 0 1 3642300 + 1552 19897 1099 1115 1712 1712 0.041019126261289784 ALRRHIAVL 9 Unmodified _ALRRHIAVL_ 0 0 0 nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2297973632812 3 350.229454 1047.66653 NaN NaN NaN NaN NaN NaN NaN 25.944 1 25.971 25.471 26.471 0.026951 0 0 0 0.75456 1 13446 13446 7.609 4.2893 1 1553 694 1100 1116 1713 1713 0.14460543316272378 ALRRWPKPL 9 Unmodified _ALRRWPKPL_ 0 0 0 REV__ENST00000543908.5_1_17:43163921-43175921:+|nuORF REV__ENST00000543908.5_1_17:43163921-43175921:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8533935546875 2 568.856193 1135.69783 NaN NaN NaN NaN NaN NaN NaN 95.214 1 94.846 94.346 95.346 -0.36814 0 0 0 0.84369 1 52009 52009 2.3027 1.5091 1 + 1554 28636 1101 1117 1714 1714 0.13541116350347693 ALRTHLAPYS 10 Unmodified _ALRTHLAPYS_ 0 0 0 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8766784667969 3 376.876857 1127.60874 0.022498 8.4789E-06 0.28418 0.0001071 0.30667 0.00011558 376.87704920078977 38.14 0.23388 38.157 38.005 38.239 0.01704 21 10 3 0 0 0 0.70363 1 20297 20297 1.2148 0.14337 1 1936100 1555 3351 1102 1118 1715 1715 0.050042366001889604 ALRTHLAPYS 10 Unmodified _ALRTHLAPYS_ 0 0 0 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 ENSG00000118137|ENST00000236850|APOA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.876857 1127.60874 0.0060287 2.2721E-06 1.2693 0.00047839 1.2754 0.00048066 376.8773896838163 38.582 0.20779 38.296 38.134 38.342 -0.28687 0.069124 0.00059971 NaN 1.2148 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1823900 1556 3351 1102 1118 0.050042366001889604 ALRVATQDQ 9 Unmodified _ALRVATQDQ_ 0 0 0 REV__ENSG00000141096|ENST00000268793|DPEP3 REV__ENSG00000141096|ENST00000268793|DPEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2738952636719 2 501.272355 1000.53016 1.1958 0.00059942 3.8868 0.0019483 5.0826 0.0025478 501.27444170520954 70.919 0.27956 70.954 70.874 71.153 0.035515 22 12 2 0 0 0 0.28023 1 39056 39056 18.146 0.011366 1 2791300 + 1557 20518 1103 1119 1716 1716 0.02991384295091848 ALSALTARL 9 Unmodified _ALSALTARL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2851257324219 2 458.284734 914.554916 0.28484 0.00013054 -0.5584 -0.0002559 -0.27355 -0.00012537 458.28449985747824 54.331 0.32113 54.264 54.101 54.422 -0.066936 40 15 3 0 0 0 0.0082475 2 29457 29457;29565 92.653 36.476 1 20800000 1558 3388 1104 1120 1717;1718 1717 0.09422064168461475 ALSALTARL 9 Unmodified _ALSALTARL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2854614257812 2 458.284734 914.554916 0.99295 0.00045505 0.19884 9.1126E-05 1.1918 0.00054618 458.2848618808245 60.118 0.43063 54.004 53.745 54.175 -6.1147 39 22 2 0 0 0 0.0082353 2 38598 38598;38734 96.111 30.876 1 57240000 1559 3388 1104 1120 1719;1720 1719 0.09422064168461475 ALSDETWGL 9 Unmodified _ALSDETWGL_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2406921386719 2 496.24019 990.465826 0.38709 0.00019209 0.29271 0.00014525 0.6798 0.00033734 496.2403761586531 67.652 0.20166 67.652 67.541 67.743 0 13 9 2 0 0 0 0.46577 1 37718 37718 9.3474 2.9933 1 1281200 1560 5370 1105 1121 1721 1721 -0.029788155817072948 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8539428710938 3 356.853941 1067.53999 -0.27743 -9.9001E-05 -0.3958 -0.00014124 -0.67323 -0.00024024 356.8538030216698 40.647 0.31939 40.647 40.471 40.79 0 80 17 6 0 0 0 0.087258 2 21788 21788;21900 32.786 16.637 1 1172600000 1561 6042 1106 1122 1722;1723 1722 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7796630859375 2 534.777274 1067.53999 -0.08355 -4.4681E-05 -0.92498 -0.00049466 -1.0085 -0.00053934 534.7766353324873 40.63 0.31939 40.63 40.471 40.79 0 61 17 4 0 0 0 0.0094915 2 21795 21795;21912 81.864 51.248 1 922040000 1562 6042 1106 1122 1724;1725 1724 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.85400390625 3 356.853941 1067.53999 0.30204 0.00010778 -0.068684 -2.451E-05 0.23335 8.3272E-05 356.8538698978568 40.97 0.44682 40.667 40.482 40.929 -0.30304 80 21 5 0 0 0 0.087258 2 21614 21614;21717 39.95 18.413 1 280130000 1563 6042 1106 1122 1726;1727 1726 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.777099609375 2 534.777274 1067.53999 0.27961 0.00014953 -0.061812 -3.3056E-05 0.2178 0.00011647 534.7771963260616 40.99 0.42709 40.687 40.502 40.929 -0.30304 66 20 4 0 0 0 0.0086179 2 21628 21628;21741 89.427 60.94 1 239640000 1564 6042 1106 1122 1728;1729 1728 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8543701171875 3 356.853941 1067.53999 0.34786 0.00012414 0.15514 5.5364E-05 0.503 0.0001795 356.85402681415815 40.679 0.30821 40.684 40.529 40.837 0.0050545 34 14 3 0 0 0 0.087258 1 21672 21672 26.268 14.027 1 24513000 1565 6042 1106 1122 1730 1730 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2786865234375 2 534.777274 1067.53999 0.45448 0.00024305 -0.46777 -0.00025015 -0.013288 -7.1061E-06 534.7770158871119 40.678 0.28842 40.683 40.549 40.837 0.0050583 38 13 4 0 0 0 0.012158 2 21674 21674;21781 74.396 49.722 1 21983000 1566 6042 1106 1122 1731;1732 1731 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8543395996094 3 356.853941 1067.53999 1.0749 0.00038357 -0.52344 -0.00018679 0.55144 0.00019678 356.85362851630515 45.26 1.4253 40.306 39.889 41.315 -4.9549 324 95 5 0 0 0 0.03327 7 27508 27508;27647;27791;27934;28087;28232;28378 56.177 40.028 1 2465100000 1567 6042 1106 1122 1733;1734;1735;1736;1737;1738;1739 1733 0.008925723004722386 ALSDHHIYL 9 Unmodified _ALSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.778076171875 2 534.777274 1067.53999 0.32117 0.00017175 -0.02348 -1.2556E-05 0.29769 0.0001592 534.7771318289844 45.186 1.0285 40.334 39.863 40.892 -4.852 226 69 5 0 0 0 0.0086179 4 28017 27588;27732;27873;28017 89.427 59.202 1 1579399999.9999998 1568 6042 1106 1122 1740;1741;1742;1743 1743 0.008925723004722386 ALSDHHVYL 9 Unmodified _ALSDHHVYL_ 0 0 0 ENSG00000109107|ENST00000226253|ALDOC ENSG00000109107|ENST00000226253|ALDOC ENSG00000109107|ENST00000226253|ALDOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1828002929688 3 352.182058 1053.52434 -0.53498 -0.00018841 0.71762 0.00025273 0.18264 6.4323E-05 352.18236009252115 34.877 0.24397 34.877 34.733 34.977 0 31 12 3 0 0 0 0.12841 1 18369 18369 27.629 19.473 1 10514000 1569 2631 1107 1123 1744 1744 -0.00027714216571439465 ALSDHHVYL 9 Unmodified _ALSDHHVYL_ 0 0 0 ENSG00000109107|ENST00000226253|ALDOC ENSG00000109107|ENST00000226253|ALDOC ENSG00000109107|ENST00000226253|ALDOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1828002929688 3 352.182058 1053.52434 1.4162 0.00049876 0.13606 4.7918E-05 1.5523 0.00054668 352.18206478751927 38.95 0.37323 34.499 34.316 34.689 -4.4509 61 23 3 0 0 0 0.038285 2 22976 22976;23105 53.833 35.686 1 29884000 1570 2631 1107 1123 1745;1746 1745 -0.00027714216571439465 ALSDIVAQV 9 Unmodified _ALSDIVAQV_ 0 0 0 REV__ENSG00000258890|ENST00000556440|CEP95 REV__ENSG00000258890|ENST00000556440|CEP95 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2617797851562 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 61.781 1 61.781 61.281 62.281 0 0 0 0 0.3092 1 34445 34445 24.674 0 1 + 1571 24570 1108 1124 1747 1747 0.04662365177625816 ALSDLLSRL 9 Unmodified _ALSDLLSRL_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.296142578125 2 494.295299 986.576045 0.49555 0.00024495 1.3677 0.00067603 1.8632 0.00092098 494.29580276190086 66.996 0.21445 66.513 66.355 66.569 -0.48323 19 9 3 0 0 0 0.18144 1 36590 36590 24.991 3.454 1 823360 1572 1116 1109 1125 1748 1748 0.08222029477337855 ALSDLRCNL 9 Carbamidomethyl (C) _ALSDLRC(Carbamidomethyl (C))NL_ ALSDLRC(1)NL ALSDLRC(120)NL 0 1 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000469182.1_1_6:31610750-31613330:-|nuORF nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2750854492188 2 531.274041 1060.53353 1.1093 0.00058935 -3.2183 -0.0017098 -2.109 -0.0011205 531.2719495970971 50.314 0.22415 44.775 44.647 44.872 -5.5391 32 13 3 0 0 0 0.0048194 1 31533 31533 117.76 42 1 18770000 1573 10287 1110 1126 1749 1749 930 0.005683110774270972 ALSDSIHTV 9 Unmodified _ALSDSIHTV_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7476196289062 2 471.748182 941.481811 0.023598 1.1132E-05 -0.17164 -8.0972E-05 -0.14804 -6.984E-05 471.74802245570487 35.5 0.23476 35.5 35.38 35.615 0 27 11 3 0 0 0 0.0082281 1 18749 18749 92.822 48.415 1 17778000 1574 2747 1111 1127 1750 1750 0.008728906551937143 ALSDSIHTV 9 Unmodified _ALSDSIHTV_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7486572265625 2 471.748182 941.481811 1.1887 0.00056078 0.47083 0.00022212 1.6596 0.0007829 471.7481521243398 40.949 0.52802 36.341 36.084 36.612 -4.6079 59 32 3 0 0 0 0.026094 2 24564 24437;24564 57.471 23.07 1 43600000 1575 2747 1111 1127 1751;1752 1752 0.008728906551937143 ALSDTMARHSY 11 Unmodified _ALSDTMARHSY_ 0 0 0 REV__ENST00000411526.5_1_7:154738120-154738509:+|nuORF REV__ENST00000411526.5_1_7:154738120-154738509:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8654479980469 3 417.8644 1250.57137 NaN NaN NaN NaN NaN NaN NaN 43.733 1 43.717 43.217 44.217 -0.015667 0 0 0 0.76933 1 23444 23444 13.535 0.01627 1 + 1576 26711 1112 1128 1753 1753 -0.04389222727741071 ALSDVLAHLG 10 Unmodified _ALSDVLAHLG_ 0 0 0 ENST00000553678.1_1_14:85995020-85995465:+|nuORF ENST00000553678.1_1_14:85995020-85995465:+|nuORF ENST00000553678.1_1_14:85995020-85995465:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7615661621094 2 498.279649 994.544745 0.21197 0.00010562 -0.061883 -3.0835E-05 0.15009 7.4787E-05 498.2794765152333 47.034 0.16228 47.034 46.941 47.103 0 10 7 2 0 0 0 0.23489 1 25681 25681 7.9102 0.62092 1 3123400 1577 15195 1113 1129 1754 1754 0.047254564432250845 ALSEELHAA 9 Unmodified _ALSEELHAA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7395324707031 2 470.740357 939.46616 0.25515 0.00012011 0.34235 0.00016116 0.5975 0.00028127 470.74010381503047 31.171 0.22573 31.171 31.071 31.296 0 19 10 3 0 0 0 0.03327 1 16214 16214 53.576 19.473 1 2994600 1578 10310 1114 1130 1755 1755 -0.005993958618546458 ALSEELHAA 9 Unmodified _ALSEELHAA_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7403564453125 2 470.740357 939.46616 0.75783 0.00035674 0.59645 0.00028077 1.3543 0.00063751 470.7406418727445 35.561 0.39552 31.369 31.188 31.584 -4.1928 43 24 2 0 0 0 0.026094 2 20768 20621;20768 57.471 28.985 1 16722000 1579 10310 1114 1130 1756;1757 1757 -0.005993958618546458 ALSEELVQL 9 Unmodified _ALSEELVQL_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2803039550781 2 501.279315 1000.54408 0.0090903 4.5568E-06 0.50509 0.00025319 0.51418 0.00025775 501.27951998391063 71.103 0.46825 71.103 70.895 71.363 0 40 22 2 0 0 0 0.0077963 2 39561 39561;39663 109.63 35.207 1 14995000 1580 8019 1115 1131 1758;1759 1758 0.04382617003534506 ALSEELVQL 9 Unmodified _ALSEELVQL_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2802124023438 2 501.279315 1000.54408 1.5221 0.00076301 0.58828 0.0002949 2.1104 0.0010579 501.2797824693496 79.295 0.67609 73.119 72.728 73.404 -6.1757 71 37 3 0 0 0 0.010877 3 51960 51838;51960;52112 77.984 24.409 1 29377000 1581 8019 1115 1131 1760;1761;1762 1761 0.04382617003534506 ALSEHHYHNI 10 Unmodified _ALSEHHYHNI_ 0 0 0 REV__nc|ENSG00000117461|Q92569-3|PIK3R3 REV__nc|ENSG00000117461|Q92569-3|PIK3R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7959594726562 2 610.793986 1219.57342 0.255 0.00015575 -0.69776 -0.00042618 -0.44276 -0.00027043 610.7948565844148 65.4 0.27048 64.915 64.77 65.041 -0.48428 28 12 3 0 0 0 0.52888 1 35673 35673 14.838 0 1 3210800 + 1582 19106 1116 1132 1763 1763 -0.02758425927618191 ALSEIEPFE 9 Unmodified _ALSEIEPFE_ 0 0 0 REV__nc|ENSG00000103723|Q13367-3|AP3B2 REV__nc|ENSG00000103723|Q13367-3|AP3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7545166015625 2 517.755672 1033.49679 0.31028 0.00016065 -1.0776 -0.00055791 -0.76728 -0.00039726 517.7555440296417 76.035 0.45641 76.035 75.791 76.248 0 39 20 3 0 0 0 0.070838 1 42262 42262 39.957 3.4511 1 4656700 + 1583 18322 1117 1133 1764 1764 -0.018616622674926475 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4881591796875 1 874.488024 873.480748 -0.40944 -0.00035805 0.41631 0.00036406 0.0068744 6.0116E-06 874.4883124416706 55.983 0.26955 55.983 55.892 56.162 0 23 13 2 0 0 0 0.0086629 1 31110 31110 101.72 4.6473 1 7630200 1584 5533 1118 1134 1765 1765 0.03894676286279264 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2482604980469 2 437.74765 873.480748 -0.30387 -0.00013302 -0.36289 -0.00015885 -0.66675 -0.00029187 437.74750499582666 55.976 0.22265 55.976 55.916 56.138 0 19 10 2 0 0 0 0.10925 1 31117 31117 32.117 3.9437 1 3244300 1585 5533 1118 1134 1766 1766 0.03894676286279264 ALSELATAV 9 Unmodified _ALSELATAV_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43 nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.486572265625 1 874.488024 873.480748 1.454 0.0012715 0.28586 0.00024998 1.7399 0.0015215 874.4881115455702 64.251 0.41338 58.076 57.918 58.331 -6.1757 34 21 2 0 0 0 0.0086179 1 41562 41562 89.427 15.004 1 14850000 1586 5533 1118 1134 1767 1767 0.03894676286279264 ALSELIILT 9 Unmodified _ALSELIILT_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.803955078125 2 486.802426 971.590298 NaN NaN NaN NaN NaN NaN NaN 89.724 1 89.223 88.723 89.723 -0.50171 0 0 0 0.76439 1 49052 49052 7.2892 3.3448 1 1587 259 1119 1135 1768 1768 0.10336681905619116 ALSEQILMV 9 Oxidation (M) _ALSEQILM(Oxidation (M))V_ ALSEQILM(1)V ALSEQILM(64)V 0 0 1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2758483886719 2 510.275718 1018.53688 0.52364 0.0002672 -0.39015 -0.00019908 0.1335 6.812E-05 510.2756161857755 66.836 0.47106 66.836 66.637 67.108 0 72 21 4 0 0 0 0.019303 2 37324 37225;37324 64.236 15.89 1 19095000 1588 8908 1120 1136 1769;1770 1770 1504 0.028355611314623275 ALSEQILMV 9 Unmodified _ALSEQILMV_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2782287597656 2 502.27826 1002.54197 -0.77229 -0.00038791 3.5769 0.0017966 2.8047 0.0014087 502.2796972644348 77.175 0.22232 76.693 76.58 76.803 -0.4826 12 9 2 0 0 0 0.43463 1 42277 42277 10.824 0.75 1 431460 1589 8908 1120 1137 1771 1771 0.040798649940711584 ALSEVTAAL 9 Unmodified _ALSEVTAAL_ 0 0 0 ENST00000533343.1_1_11:4103494-4104733:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENSG00000167323|ENST00000526596|STIM1 ENST00000533343.1_1_11:4103494-4104733:+|nuORF ENST00000533343.1_1_11:4103494-4104733:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4862670898438 1 874.488024 873.480748 0.48387 0.00042314 0.27142 0.00023735 0.75529 0.00066049 874.4881513427645 57.407 0.2923 57.407 57.239 57.532 0 19 12 2 0 0 0 0.013472 1 31905 31905 70.716 13.244 1 2546100 1590 7599 1121 1138 1772 1772 0.03894676286279264 ALSEWLTAI 9 Unmodified _ALSEWLTAI_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2763061523438 2 502.276575 1002.5386 0.049737 2.4982E-05 -0.23407 -0.00011757 -0.18433 -9.2585E-05 502.2765058352036 94.067 0.35329 93.647 93.503 93.856 -0.42044 35 19 2 0 0 0 0.46577 2 51376 51376;51478 9.3474 0 1 2299700 1591 10310 1122 1139 1773;1774 1773 0.037429382116897614 ALSEWLTAI 9 Unmodified _ALSEWLTAI_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2774353027344 2 502.276575 1002.5386 1.8714 0.00093994 -0.042716 -2.1455E-05 1.8286 0.00091848 502.27657324875366 93.594 0.3475 93.617 93.472 93.819 0.022987 32 13 3 0 0 0 0.087258 1 52023 52023 36.044 12.896 1 4176500 1592 10310 1122 1139 1775 1775 0.037429382116897614 ALSEWLTAI 9 Unmodified _ALSEWLTAI_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.276123046875 2 502.276575 1002.5386 1.3517 0.00067893 -0.04841 -2.4315E-05 1.3033 0.00065462 502.27646875404224 100.18 0.21735 94.005 93.87 94.088 -6.1757 33 13 3 0 0 0 0.0094915 1 66903 66903 81.864 21.474 1 237520000 1593 10310 1122 1139 1776 1776 0.037429382116897614 ALSGHLETV 9 Unmodified _ALSGHLETV_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2 ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.217041015625 2 463.750724 925.486896 -0.015571 -7.2208E-06 -0.32306 -0.00014982 -0.33863 -0.00015704 463.75050866412727 33.814 0.25897 33.814 33.667 33.926 0 31 12 3 0 0 0 0.12183 1 17736 17736 34.102 5.6156 1 13469000 1594 9079 1123 1140 1777 1777 0.02117194517813914 ALSGHLETV 9 Unmodified _ALSGHLETV_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2 ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7506408691406 2 463.750724 925.486896 0.31069 0.00014408 -0.41394 -0.00019197 -0.10325 -4.7882E-05 463.7505413134255 38.594 0.39996 34.225 34.03 34.43 -4.3689 46 25 2 0 0 0 0.0067112 3 22846 22650;22707;22846 112.59 52.204 1 69734000 1595 9079 1123 1140 1778;1779;1780 1780 0.02117194517813914 ALSHGGGGGGG 11 Unmodified _ALSHGGGGGGG_ 0 0 0 ENSG00000184486|ENST00000328345|POU3F2 ENSG00000184486|ENST00000328345|POU3F2 ENSG00000184486|ENST00000328345|POU3F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.3806762695312 1 826.380205 825.372929 -0.0041108 -3.3971E-06 1.6013 0.0013233 1.5972 0.0013199 826.3810507508218 90.38 0.1418 90.38 90.295 90.437 0 11 8 2 0 0 0 0.7453 1 50025 50025 0 0 1 676900 1596 9263 1124 1141 1781 1781 -0.046742755244054024 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.8047790527344 2 500.8055 999.596446 0.95523 0.00047839 -0.51414 -0.00025749 0.44109 0.0002209 500.8051908508616 51.188 0.33745 51.188 51.032 51.369 0 41 15 4 0 0 0 0.010233 1 28210 28210 87.258 22.023 1 20797000 1597 5791 1125 1142 1782 1782 0.09663200137140393 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.8045043945312 2 500.8055 999.596446 -0.31341 -0.00015696 -0.82537 -0.00041335 -1.1388 -0.00057031 500.8047914468263 55.77 0.18862 55.77 55.692 55.881 0 30 17 2 0 0 0 0.035736 1 30983 30983 65.235 5.1611 1 12024000 1598 5791 1125 1142 1783 1783 0.09663200137140393 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8048706054688 2 500.8055 999.596446 -0.36281 -0.0001817 0.79539 0.00039834 0.43258 0.00021664 500.805932811921 51.563 0.23944 51.146 51.024 51.263 -0.41737 36 12 4 0 0 0 0.095786 1 27785 27785 47.594 5.7548 1 17753000 1599 5791 1125 1142 1784 1784 0.09663200137140393 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8051452636719 2 500.8055 999.596446 NaN NaN NaN NaN NaN NaN NaN 56.173 1 55.687 55.187 56.187 -0.48554 0 0 0 0.14292 1 30493 30493 47.749 3.8904 1 1600 5791 1125 1142 1785 1785 0.09663200137140393 ALSKEGIVAL 10 Unmodified _ALSKEGIVAL_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8058471679688 2 500.8055 999.596446 0.93535 0.00046843 0.012885 6.4528E-06 0.94824 0.00047488 500.80549905335624 57.085 0.55403 51.108 50.773 51.327 -5.9769 66 32 3 0 0 0 0.03037 1 36492 36492 67.838 23.98 1 104930000 1601 5791 1125 1142 1786 1786 0.09663200137140393 ALSLDEIVF 9 Unmodified _ALSLDEIVF_ 0 0 0 ENST00000487532.5_1_1:45424435-45452248:-|nuORF ENST00000487532.5_1_1:45424435-45452248:-|nuORF ENST00000487532.5_1_1:45424435-45452248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7771911621094 2 503.776408 1005.53826 0.48326 0.00024345 0.6123 0.00030846 1.0956 0.00055192 503.7766254405538 81.319 0.36966 81.319 81.121 81.491 0 45 16 4 0 0 0 0.10925 1 45158 45158 32.117 3.6301 1 3113000 1602 14206 1126 1143 1787 1787 0.03571518491855841 ALSLHQIPD 9 Unmodified _ALSLHQIPD_ 0 0 0 ENST00000311177.6_1_17:46700370-46700481:-|nuORF ENST00000311177.6_1_17:46700370-46700481:-|nuORF ENST00000311177.6_1_17:46700370-46700481:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2718200683594 2 497.271824 992.529095 NaN NaN NaN NaN NaN NaN NaN 20.717 1 20.717 20.217 21.217 0 0 0 0 0.84564 1 10438 10438 2.0598 0.40713 1 1603 11687 1127 1144 1788 1788 0.03253169926199462 ALSMLNIEDFI 11 Unmodified _ALSMLNIEDFI_ 0 0 0 REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3273315429688 2 633.325939 1264.63732 0.12535 7.9388E-05 -0.044638 -2.827E-05 0.080714 5.1118E-05 633.3258506443442 89.35 0.27898 89.35 89.208 89.487 0 23 13 2 0 0 0 0.70701 1 49431 49431 3.5965 0 1 854670 + 1604 17259 1128 1145 1789 1789 0.015591733944347652 ALSMLNIEDFI 11 Unmodified _ALSMLNIEDFI_ 0 0 0 REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF REV__ENST00000588207.1_1_18:57637691-57638603:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.3279418945312 2 633.325939 1264.63732 0.11719 7.4218E-05 0.061099 3.8696E-05 0.17829 0.00011291 633.326148528822 89.576 0.32797 89.074 88.889 89.217 -0.50172 31 13 3 0 0 0 0.70701 1 48923 48923 3.5965 0 1 1431300 + 1605 17259 1128 1145 1790 1790 0.015591733944347652 ALSNLEVTL 9 Unmodified _ALSNLEVTL_ 0 0 0 nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2733459472656 2 480.274032 958.533512 -0.13026 -6.2562E-05 -1.1349 -0.00054505 -1.2651 -0.00060761 480.2734894286317 71.313 0.55307 71.313 70.935 71.488 0 58 26 3 0 0 0 0.010818 2 39689 39689;39789 78.149 12.914 1 5028700 1606 1944 1129 1146 1791;1792 1791 0.05258634349092972 ALSNLEVTL 9 Unmodified _ALSNLEVTL_ 0 0 0 nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.5401000976562 1 959.540788 958.533512 -0.39145 -0.00037562 -0.21442 -0.00020574 -0.60587 -0.00058136 959.5402364617642 71.332 0.37093 71.332 71.117 71.488 0 48 18 3 0 0 0 0.0082485 1 39771 39771 96.285 21.356 1 6411200 1607 1944 1129 1146 1793 1793 0.05258634349092972 ALSNLEVTL 9 Unmodified _ALSNLEVTL_ 0 0 0 nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 959.5421142578125 1 959.540788 958.533512 0.44284 0.00042492 -0.17538 -0.00016829 0.26745 0.00025663 959.5409286976743 71.771 0.59221 71.294 70.907 71.499 -0.47609 44 23 3 0 0 0 0.011968 1 39259 39259 74.929 18.752 1 1856100 1608 1944 1129 1146 1794 1794 0.05258634349092972 ALSNLEVTL 9 Unmodified _ALSNLEVTL_ 0 0 0 nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.5404052734375 1 959.540788 958.533512 1.312 0.0012589 -1.2128 -0.0011637 0.099139 9.5128E-05 959.5398491790037 79.394 0.51482 73.218 72.967 73.482 -6.1757 62 29 3 0 0 0 0.0036082 3 51991 51872;51991;52126 123.45 34.497 1 22166000 1609 1944 1129 1146 1795;1796;1797 1796 0.05258634349092972 ALSPHNILL 9 Unmodified _ALSPHNILL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2940979003906 2 489.292559 976.570566 0.45092 0.00022063 2.4306 0.0011893 2.8815 0.0014099 489.2939903656451 59.064 0.35946 58.573 58.391 58.75 -0.49079 23 16 2 0 0 0 0.032796 1 32133 32133 53.833 11.738 1 2801400 1610 5686 1130 1147 1798 1798 0.0813435068552053 ALSPHNILL 9 Unmodified _ALSPHNILL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2958984375 2 489.292559 976.570566 0.82217 0.00040228 0.50582 0.00024749 1.328 0.00064978 489.2936915940412 58.657 0.30939 58.596 58.432 58.741 -0.060719 23 15 2 0 0 0 0.044011 1 31997 31997 47.749 11.704 1 1975300 1611 5686 1130 1147 1799 1799 0.0813435068552053 ALSPHNILL 9 Unmodified _ALSPHNILL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2935180664062 2 489.292559 976.570566 1.415 0.00069233 0.41938 0.0002052 1.8343 0.00089752 489.2926144216795 64.282 0.41634 58.107 57.899 58.315 -6.1757 38 21 2 0 0 0 0.028475 1 41594 41594 56.177 20.133 1 15067000 1612 5686 1130 1147 1800 1800 0.0813435068552053 ALSPPHPP 8 Unmodified _ALSPPHPP_ 0 0 0 ENST00000534797.5_1_11:502881-503247:-|nuORF ENST00000534797.5_1_11:502881-503247:-|nuORF ENST00000534797.5_1_11:502881-503247:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2260131835938 2 408.224146 814.433738 NaN NaN NaN NaN NaN NaN NaN 17.811 1 15.224 14.724 15.724 -2.5866 0 0 0 0.73801 1 9344 9344 26.341 0 1 1613 14959 1131 1148 1801 1801 0.019098615258030804 ALSQDIPEI 9 Unmodified _ALSQDIPEI_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4 ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2639770507812 2 493.263665 984.512776 0.14631 7.217E-05 0.53775 0.00026525 0.68406 0.00033742 493.2639779220823 63.917 0.5758 63.917 63.659 64.235 0 67 23 4 0 0 0 0.024882 2 35665 35566;35665 58.679 14.821 1 11935000 1614 635 1132 1149 1802;1803 1803 0.01990043969431099 ALSQDIPEI 9 Unmodified _ALSQDIPEI_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4 ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 985.5137329101562 1 985.520053 984.512776 0.041234 4.0637E-05 -0.0657 -6.4748E-05 -0.024465 -2.4111E-05 985.5198693172862 63.88 0.29018 63.88 63.732 64.022 0 18 11 2 0 0 0 0.024882 1 35623 35623 58.679 8.7458 1 906230 1615 635 1132 1149 1804 1804 0.01990043969431099 ALSQDIPEI 9 Unmodified _ALSQDIPEI_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4 ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2642211914062 2 493.263665 984.512776 1.1453 0.00056494 -0.57489 -0.00028357 0.57042 0.00028137 493.26358887494706 71.318 0.36061 65.143 64.921 65.281 -6.1757 31 17 2 0 0 0 0.031062 1 46559 46559 54.774 8.7526 1 35487000 1616 635 1132 1149 1805 1805 0.01990043969431099 ALSSLAVVVS 10 Unmodified _ALSSLAVVVS_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 473.7314147949219 2 473.2844 944.554247 1.2181 0.0005765 -1.3182 -0.00062389 -0.10014 -4.7396E-05 473.28393744300445 49.564 0.2579 44.031 43.931 44.189 -5.533 21 16 2 0 0 0 0.22811 1 31036 31036 14.838 0 1 26937000 1617 9652 1133 1150 1806 1806 0.079752247287729 ALSSLAVVVS 10 Unmodified _ALSSLAVVVS_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 473.2844 944.554247 0.081114 3.839E-05 -0.84479 -0.00039983 -0.76368 -0.00036144 473.2839980124152 43.637 0.21677 43.637 43.507 43.723 0 -0.19684 0.00020795 NaN 14.838 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 9226600 1618 9652 1133 1150 0.079752247287729 ALSSLLHAL 9 Unmodified _ALSSLLHAL_ 0 0 0 ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7794494628906 2 462.779285 923.544017 0.012533 5.7998E-06 0.60132 0.00027828 0.61385 0.00028408 462.7795743424879 69.03 0.4734 68.549 68.399 68.873 -0.48071 43 20 3 0 0 0 0.2001 1 37812 37812 23.148 0 1 5604500 1619 14127 1134 1151 1807 1807 0.0791866179419003 ALSSLLHAL 9 Unmodified _ALSSLLHAL_ 0 0 0 ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7798767089844 2 462.779285 923.544017 0.67496 0.00031236 0.17386 8.046E-05 0.84883 0.00039282 462.77935907665136 68.586 0.5675 68.611 68.397 68.964 0.025146 50 26 2 0 0 0 0.03327 2 37615 37615;37715 53.576 0 1 28291000 1620 14127 1134 1151 1808;1809 1808 0.0791866179419003 ALSSLLHAL 9 Unmodified _ALSSLLHAL_ 0 0 0 ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF ENST00000483233.5_1_3:52003252-52003432:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7795104980469 2 462.779285 923.544017 1.0644 0.00049256 0.15825 7.3237E-05 1.2226 0.0005658 462.7792247191288 88.823 1.0137 82.647 82.206 83.22 -6.1757 111 56 3 0 0 0 0.019979 5 58742 58374;58497;58615;58742;58874 63.563 0 1 37046000 1621 14127 1134 1151 1810;1811;1812;1813;1814 1813 0.0791866179419003 ALSSLLPF 8 Unmodified _ALSSLLPF_ 0 0 0 REV__ENST00000582963.1_1_17:37885621-37885774:-|nuORF REV__ENST00000582963.1_1_17:37885621-37885774:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 848.498779296875 1 847.492381 846.485105 1.2486 0.0010581 0.96065 0.00081414 2.2092 0.0018723 847.4932178060453 100.08 0.13768 93.907 93.819 93.957 -6.1757 16 8 2 0 0 0 0.41521 1 66810 66810 42.968 2.5194 1 25255000 + 1622 29075 1135 1152 1815 1815 0.055721854998637355 ALSSVLHSI 9 Unmodified _ALSSVLHSI_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7691345214844 2 463.768917 925.523281 -1.0886 -0.00050486 0.86527 0.00040128 -0.22333 -0.00010357 463.76936328423983 56.359 0.1363 55.873 55.787 55.923 -0.48554 11 6 2 0 0 0 0.038285 1 30594 30594 50.855 6.448 1 2621200 1623 8890 1136 1153 1816 1816 0.05754071414526152 ALSSVYLLL 9 Unmodified _ALSSVYLLL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7982788085938 2 489.797143 977.579734 0.56729 0.00027785 1.376 0.00067395 1.9433 0.0009518 489.7977337721752 93.376 0.40714 92.918 92.683 93.09 -0.4574 40 17 3 0 0 0 0.03327 1 51058 51058 53.576 9.1686 1 2147100 1624 2128 1137 1154 1817 1817 0.09004699251204329 ALSTHSLAL 9 Unmodified _ALSTHSLAL_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.761962890625 2 456.761092 911.507631 0.59678 0.00027258 0.32151 0.00014685 0.91828 0.00041944 456.7608504653742 59.222 0.30091 59.222 58.984 59.285 0 21 12 2 0 0 0 0.28047 1 32950 32950 18.135 4.2289 1 1166900 + 1625 24566 1138 1155 1818 1818 0.04833784897471105 ALSTVGPHLCI 11 Unmodified _ALSTVGPHLCI_ 0 0 0 nc|ENSG00000070748|P28329-2|CHAT nc|ENSG00000070748|P28329-2|CHAT nc|ENSG00000070748|P28329-2|CHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8041381835938 2 555.802434 1109.59032 4.539 0.0025228 -1.714 -0.00095264 2.825 0.0015701 555.8013779227358 99.069 0.15979 99.041 98.948 99.108 -0.028282 11 5 3 0 0 0 0.42031 1 55042 55042 20.454 1.1966 1 3803900 1626 16046 1139 1156 1819 1819 0.03990358633973301 ALSTVTRGSM 10 Unmodified _ALSTVTRGSM_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.769287109375 2 511.768591 1021.52263 0.37894 0.00019393 1.1234 0.00057494 1.5024 0.00076887 511.76928935443004 32.866 0.30413 29.009 28.796 29.1 -3.8562 22 16 2 0 0 0 0.56348 1 18762 18762 13.042 1.4022 1 15775000 1627 4927 1140 1157 1820 1820 0.012729087031743802 ALSVPTIPPP 10 Unmodified _ALSVPTIPPP_ 0 0 0 ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2944946289062 2 496.294768 990.574983 0.51803 0.00025709 -0.55543 -0.00027565 -0.037399 -1.8561E-05 496.29450015995053 57.184 0.31895 56.694 56.539 56.858 -0.48974 34 14 3 0 0 0 0.24625 1 31139 31139 30.637 2.1497 1 11140000 1628 2014 1141 1158 1821 1821 0.07931815108440787 ALSWFLNPI 9 Unmodified _ALSWFLNPI_ 0 0 0 ENST00000609274.5_2_19:15562735-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7942504882812 2 530.794935 1059.57532 1.1374 0.00060372 -1.2412 -0.00065884 -0.10385 -5.5123E-05 530.7935110478501 87.775 0.62907 81.6 81.221 81.85 -6.1757 45 34 2 0 0 0 0.028475 1 57858 57858 56.177 2.3442 1 14854000 1629 15877 1142 1159 1822 1822 0.04791234828257984 ALSWFLNPI 9 Unmodified _ALSWFLNPI_ 0 0 0 ENST00000609274.5_2_19:15562735-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF ENST00000609274.5_2_19:15562735-15563116:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.796630859375 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 87.925 1 81.75 81.25 82.25 -6.1757 0 0 0 0.083082 1 57991 57991 47.749 2.0491 1 1630 15877 1142 1159 1823 1823 0.04791234828257984 ALSWKRGIQ 9 Unmodified _ALSWKRGIQ_ 0 0 0 REV__ENSG00000144671|ENST00000448498|SLC22A14 REV__ENSG00000144671|ENST00000448498|SLC22A14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5423889160156 3 353.541697 1057.60326 2.0247 0.00071583 -0.52615 -0.00018602 1.4986 0.00052981 353.5415443285579 58.811 1.0332 52.736 52.031 53.065 -6.0745 74 56 2 0 0 0 0.46501 1 37512 37512 6.1918 1.663 1 12156000 + 1631 20724 1143 1160 1824 1824 0.07676557808372309 ALSWSSPSAL 10 Unmodified _ALSWSSPSAL_ 0 0 0 REV__ENST00000377811.3_1_X:47001834-47003879:-|nuORF REV__ENST00000377811.3_1_X:47001834-47003879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7638244628906 2 509.763832 1017.51311 0.46162 0.00023532 0.54464 0.00027764 1.0063 0.00051295 509.7637866366593 73.975 0.22629 73.499 73.412 73.638 -0.47588 17 10 2 0 0 0 0.5905 1 40518 40518 11.64 0 1 860350 + 1632 25173 1144 1161 1825 1825 0.0050546368928507945 ALTAAATLSV 10 Unmodified _ALTAAATLSV_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2695922851562 2 459.26875 916.522947 0.5605 0.00025742 1.1427 0.00052481 1.7032 0.00078223 459.2693390026454 39.678 0.42868 39.678 39.424 39.853 0 49 20 3 0 0 0 0.02987 1 21290 21290 68.081 6.7232 1 9236900 1633 1751 1145 1162 1826 1826 0.06134651694662807 ALTAAATLSV 10 Unmodified _ALTAAATLSV_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 459.26875 916.522947 0.02093 9.6127E-06 1.8253 0.0008383 1.8462 0.00084791 459.26955309703953 39.914 0.2431 39.617 39.492 39.735 -0.29716 -0.030355 0.00030842 NaN 68.081 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2668800 1634 1751 1145 1162 0.06134651694662807 ALTAFVTIAL 10 Unmodified _ALTAFVTIAL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8140869140625 2 510.310418 1018.60628 0.98519 0.00050275 0.21637 0.00011042 1.2016 0.00061317 510.3102576336269 96.225 0.6588 90.05 89.63 90.289 -6.1757 101 39 5 0 0 0 0.16524 1 63660 63660 37.974 3.8716 1 853710000 1635 10579 1146 1163 1827 1827 0.09772388142516775 ALTDIVSQV 9 Unmodified _ALTDIVSQV_ 0 0 0 nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2640686035156 2 473.266207 944.517862 0.24036 0.00011376 -0.64713 -0.00030626 -0.40677 -0.00019251 473.2656804485965 64.342 0.52036 64.342 63.953 64.473 0 34 22 2 0 0 0 0.078417 1 35883 35883 38.151 9.6643 1 1278300 1636 4982 1147 1164 1828 1828 0.04338347832049294 ALTDIVSQV 9 Unmodified _ALTDIVSQV_ 0 0 0 nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.266207 944.517862 0.49428 0.00023393 1.8846 0.0008919 2.3788 0.0011258 473.26701269296035 64.907 0.17307 64.422 64.382 64.555 -0.48428 0.040129 0.0021521 NaN 38.151 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 628020 1637 4982 1147 1164 0.04338347832049294 ALTEMEEY 8 Unmodified _ALTEMEEY_ 0 0 0 REV__nc|ENSG00000107290|Q7Z333-3|SETX REV__nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.21484375 2 493.212783 984.411013 0.42223 0.00020825 2.3175 0.001143 2.7397 0.0013513 493.2139493452969 59.749 0.39044 59.749 59.489 59.879 0 18 17 2 0 0 0 0.80044 1 33310 33310 6.3541 0.59368 1 2063600 + 1638 18559 1148 1165 1829 1829 -0.08181570444639874 ALTEMEEY 8 Unmodified _ALTEMEEY_ 0 0 0 REV__nc|ENSG00000107290|Q7Z333-3|SETX REV__nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.212783 984.411013 0.42223 0.00020825 2.3175 0.001143 2.7397 0.0013513 493.2139493452969 59.749 0.39044 59.749 59.489 59.879 0 0 0 NaN 6.3541 18 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2063600 + 1639 18559 1148 1165 -0.08181570444639874 ALTEVLFHF 9 Unmodified _ALTEVLFHF_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.795654296875 2 538.792392 1075.57023 0.33882 0.00018256 -2.0474 -0.0011031 -1.7086 -0.00092058 538.7936369013703 87.782 0.47565 87.278 87.06 87.536 -0.50423 55 22 4 0 0 0 0.016494 1 47969 47969 67.035 29.061 1 3224800 1640 6025 1149 1166 1830 1830 0.035469309656718906 ALTEVLFHF 9 Unmodified _ALTEVLFHF_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7941284179688 2 538.792392 1075.57023 NaN NaN NaN NaN NaN NaN NaN 87.04 1 87.098 86.598 87.598 0.05822 0 0 0 0.029345 1 48367 48367 67.035 12.262 1 1641 6025 1149 1166 1831 1831 0.035469309656718906 ALTEVLFHF 9 Unmodified _ALTEVLFHF_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7928466796875 2 538.792392 1075.57023 0.51996 0.00028015 1.0206 0.00054987 1.5405 0.00083003 538.7940394391192 99.129 0.37938 92.954 92.764 93.144 -6.1757 47 21 4 0 0 0 0.010712 1 65924 65924 78.445 36.605 1 137370000 1642 6025 1149 1166 1832 1832 0.035469309656718906 ALTEYTLYL 9 Unmodified _ALTEYTLYL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7890014648438 2 543.789515 1085.56448 NaN NaN NaN NaN NaN NaN NaN 83.171 1 83.171 82.671 83.671 0 0 0 0 0.84369 1 46131 46131 2.3027 0 1 1643 2714 1150 1167 1833 1833 0.02511787663343057 ALTEYTLYL 9 Unmodified _ALTEYTLYL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7891845703125 2 543.789515 1085.56448 0.29025 0.00015784 0.64917 0.00035301 0.93942 0.00051085 543.7898318310514 83.677 0.40939 83.179 82.985 83.395 -0.49751 39 16 3 0 0 0 0.25297 1 45784 45784 19.439 10.846 1 2205100 1644 2714 1150 1167 1834 1834 0.02511787663343057 ALTEYTLYL 9 Unmodified _ALTEYTLYL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7901000976562 2 543.789515 1085.56448 0.95456 0.00051908 0.56441 0.00030692 1.519 0.000826 543.7896801309365 92.124 0.63456 85.949 85.55 86.185 -6.1757 52 37 2 0 0 0 0.013472 1 60916 60916 70.716 46.042 1 17988000 1645 2714 1150 1167 1835 1835 0.02511787663343057 ALTGDALAVL 10 Unmodified _ALTGDALAVL_ 0 0 0 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2768859863281 2 472.276575 942.538597 0.7067 0.00033376 2.288 0.0010806 2.9947 0.0014143 472.27755698940945 39.007 0.38789 34.556 34.316 34.704 -4.4509 48 24 3 0 0 0 0.024981 1 23062 23062 71.134 9.5317 1 21734000 + 1646 20377 1151 1168 1836 1836 0.06502938211713172 ALTGDALAVL 10 Unmodified _ALTGDALAVL_ 0 0 0 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 472.2599792480469 2 472.276575 942.538597 0.7067 0.00033376 2.288 0.0010806 2.9947 0.0014143 472.27755698940945 39.007 0.38789 34.556 34.316 34.704 -4.4509 48 24 3 0 0 0 0.076231 1 23192 23192 71.134 16.36 1 21734000 + 1647 20377 1151 1168 1837 1837 0.06502938211713172 ALTGHLEEV 9 Unmodified _ALTGHLEEV_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7567443847656 2 484.756007 967.497461 0.50898 0.00024673 -1.6469 -0.00079834 -1.1379 -0.00055161 484.7559846860378 36.979 0.56993 36.979 36.547 37.117 0 48 27 3 0 0 0 0.0090851 1 19609 19609 85.357 34.502 1 10653000 1648 4662 1152 1169 1838 1838 0.012411771722327103 ALTGHLEEV 9 Unmodified _ALTGHLEEV_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7565612792969 2 484.756007 967.497461 0.77842 0.00037734 -2.0352 -0.00098658 -1.2568 -0.00060924 484.756029364668 42.253 0.44722 37.569 37.317 37.764 -4.6846 65 28 3 0 0 0 0.0031966 2 25606 25470;25606 125.62 61.388 1 37102000 1649 4662 1152 1169 1839;1840 1840 0.012411771722327103 ALTGIADYLI 10 Unmodified _ALTGIADYLI_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7584228515625 2 525.297507 1048.58046 0.52967 0.00027823 0.052262 2.7453E-05 0.58193 0.00030569 525.2974433627305 54.961 0.31462 54.961 54.812 55.126 0 24 13 2 0 0 0 0.52888 1 30466 30466 14.838 4.0143 1 5539200 + 1650 17717;18436 1153 1170 1841 1841 0.05811493900228015 ALTGIADYLI 10 Unmodified _ALTGIADYLI_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1;REV__nc|ENSG00000105576|O14787-2|TNPO2 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7584228515625 2 525.297507 1048.58046 0.52967 0.00027823 0.052262 2.7453E-05 0.58193 0.00030569 525.2974433627305 54.961 0.31462 54.961 54.812 55.126 0 24 13 2 0 0 0 0.22811 1 30466 30466 14.838 4.0143 1 5539200 + 1651 17717;18436 1153 1170 1842 1842 0.05811493900228015 ALTGILTQF 9 Unmodified _ALTGILTQF_ 0 0 0 nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2790832519531 2 482.279118 962.543683 0.55298 0.00026669 -0.66856 -0.00032243 -0.11558 -5.5742E-05 482.2786853128783 57.546 0.38749 57.057 56.88 57.267 -0.48974 43 18 3 0 0 0 0.026094 1 31333 31333 57.471 11.45 1 36812000 1652 3526 1154 1171 1843 1843 0.06091242074319325 ALTGILTQF 9 Unmodified _ALTGILTQF_ 0 0 0 nc|ENSG00000120658|Q8TC92-2|ENOX1;ENSG00000120658|ENST00000690772|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2794494628906 2 482.279118 962.543683 1.2931 0.00062365 0.07438 3.5872E-05 1.3675 0.00065952 482.2790364556291 63.801 0.54373 57.625 57.391 57.935 -6.1757 83 29 4 0 0 0 0.026094 1 41294 41294 57.471 1.9686 1 111040000 1653 3526 1154 1171 1844 1844 0.06091242074319325 ALTGYLHTI 9 Unmodified _ALTGYLHTI_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7765808105469 2 494.776742 987.538931 -0.086884 -4.2988E-05 -0.33804 -0.00016725 -0.42492 -0.00021024 494.7765518840281 55.937 0.27954 55.459 55.279 55.559 -0.47798 27 13 3 0 0 0 0.010877 1 30337 30337 77.984 47.76 1 4393100 1654 3361 1155 1172 1845 1845 0.0446635793156247 ALTIHEESL 9 Unmodified _ALTIHEESL_ 0 0 0 REV__ENSG00000108510|ENST00000397786|MED13 REV__ENSG00000108510|ENST00000397786|MED13 MSMS AL20221201_MKP_PDAC_01 4 506.769775390625 2 506.769114 1011.52368 NaN NaN NaN NaN NaN NaN NaN 34.165 1 30.18 29.68 30.68 -3.9853 0 0 0 0.6306 1 19670 19670 11.64 0 1 + 1655 18611 1156 1173 1846 1846 0.01837446343722604 ALTRALALA 9 Unmodified _ALTRALALA_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2881469726562 2 450.287277 898.560001 1.0877 0.00048978 -0.42545 -0.00019158 0.66224 0.0002982 450.28703174611223 47.511 0.22048 47.472 47.319 47.54 -0.038643 14 9 2 0 0 0 0.13231 1 25593 25593 29.841 7.1043 1 1527700 1656 6096 1157 1174 1847 1847 0.10666368031070306 ALTRSFYVI 9 Unmodified _ALTRSFYVI_ 0 0 0 ENSG00000228300|ENST00000409293|FAM174C ENSG00000228300|ENST00000409293|FAM174C ENSG00000228300|ENST00000409293|FAM174C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3057250976562 2 535.305667 1068.59678 -0.20823 -0.00011147 0.5994 0.00032086 0.39117 0.0002094 535.3059538786691 60.769 0.26312 60.28 60.069 60.332 -0.48932 15 12 2 0 0 0 0.30562 1 33115 33115 16.942 1.0951 1 2346300 1657 10601 1158 1175 1848 1848 0.06522619856991696 ALTSRSQGQSL 11 Unmodified _ALTSRSQGQSL_ 0 0 0 ENSG00000178404|ENST00000322630|CEP295NL ENSG00000178404|ENST00000322630|CEP295NL ENSG00000178404|ENST00000322630|CEP295NL MSMS AL20221201_MKP_PDAC_01 4 383.2076416015625 3 383.207043 1146.5993 NaN NaN NaN NaN NaN NaN NaN 89.187 1 83.011 82.511 83.511 -6.1757 0 0 0 0.93669 1 58866 58866 2.2527 0.16876 1 1658 8752 1159 1176 1849 1849 0.03186423524016391 ALTSTFTLF 9 Unmodified _ALTSTFTLF_ 0 0 0 REV__ENST00000225235.4_1_10:96163115-96163205:+|nuORF REV__ENST00000225235.4_1_10:96163115-96163205:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.7706909179688 2 500.771126 999.527698 NaN NaN NaN NaN NaN NaN NaN 101.07 1 94.896 94.396 95.396 -6.1757 0 0 0 0.6306 1 67740 67740 11.64 3.4848 1 + 1659 24775 1160 1177 1850 1850 0.02791535837434367 ALTSVVVTL 9 Unmodified _ALTSVVVTL_ 0 0 0 ENST00000473078.1_1_7:92300738-92355023:-|nuORF;ENSG00000105810|ENST00000424848|CDK6 ENST00000473078.1_1_7:92300738-92355023:-|nuORF ENST00000473078.1_1_7:92300738-92355023:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 902.5560302734375 1 902.55571 901.548434 0.91706 0.0008277 -0.15907 -0.00014357 0.75799 0.00068413 902.5557888450734 83.664 0.45222 77.488 77.287 77.74 -6.1757 30 23 2 0 0 0 0.010877 1 55123 55123 77.984 13.748 1 6407600 1660 2367 1161 1178 1851 1851 0.09372126217101595 ALTTKLKT 8 Unmodified _ALTTKLKT_ 0 0 0 REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L MSMS AL20221201_MKP_PDAC_01 4 438.2820434570312 2 438.28166 874.548768 NaN NaN NaN NaN NaN NaN NaN 42.575 1 37.89 37.39 38.39 -4.6846 0 0 0 0.96305 1 25737 25737 7.9102 0 1 + 1661 19342 1162 1179 1852 1852 0.10647545936956249 ALTVRTWHW 9 Unmodified _ALTVRTWHW_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000587410.1_1_18:77132833-77134205:+|nuORF;ENST00000588921.1_3_18:77132616-77137380:+|nuORF nc|ENSG00000166377|O43861-2|ATP9B nc|ENSG00000166377|O43861-2|ATP9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5439453125 3 390.545331 1168.61416 0.8057 0.00031466 -2.269 -0.00088614 -1.4633 -0.00057148 390.54467937237706 28.112 0.28994 24.964 24.807 25.097 -3.1482 27 15 2 0 0 0 0.43463 1 15728 15728 7.1017 0 1 9432900 1662 7479 1163 1180 1853 1853 0.03659960182631039 ALTVVPSII 9 Unmodified _ALTVVPSII_ 0 0 0 REV__nc|ENSG00000290724|O14609|XKRY REV__nc|ENSG00000290724|O14609|XKRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.5772094726562 1 912.576445 911.569169 0.39071 0.00035655 0.43556 0.00039748 0.82626 0.00075403 912.5765363861655 81.399 0.26933 80.907 80.77 81.04 -0.49247 20 11 2 0 0 0 0.095405 1 44557 44557 34.102 0 1 865140 + 1663 30032 1164 1181 1854 1854 0.10984716596760791 ALTYDPTAAI 10 Unmodified _ALTYDPTAAI_ 0 0 0 ENST00000497319.1_1_3:29804425-29944618:+|nuORF;nc|ENSG00000144642|Q6XE24-3|RBMS3;nc|ENSG00000144642|Q6XE24-4|RBMS3;nc|ENSG00000144642|Q6XE24-5|RBMS3;nc|ENSG00000144642|Q6XE24-2|RBMS3;ENSG00000144642|ENST00000383767|RBMS3 ENST00000497319.1_1_3:29804425-29944618:+|nuORF ENST00000497319.1_1_3:29804425-29944618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2704467773438 2 518.27149 1034.52843 0.71618 0.00037117 -1.0711 -0.00055514 -0.35496 -0.00018396 518.2706813444304 81.181 0.45663 80.689 80.38 80.837 -0.49247 60 27 3 0 0 0 0.39779 1 44463 44463 21.747 1.293 1 5796700 1664 5625 1165 1182 1855 1855 0.012543304864720994 ALVDHGDISF 10 Unmodified _ALVDHGDISF_ 0 0 0 ENSG00000182173|ENST00000333213|TSEN54;ENST00000545228.2_1_17:73518583-73520490:+|nuORF ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2658081054688 2 537.266739 1072.51892 0.88406 0.00047498 -1.7897 -0.00096156 -0.90566 -0.00048658 537.2657293288937 54.261 0.28734 54.261 54.152 54.44 0 29 12 4 0 0 0 0.52888 1 30131 30131 14.838 0.25658 1 5463100 1665 9026 1166 1183 1856 1856 -0.014434377990482972 ALVDQLWKL 9 Unmodified _ALVDQLWKL_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3220825195312 2 543.321317 1084.62808 1.3515 0.00073431 -3.3244 -0.0018062 -1.9729 -0.0010719 543.3213883020451 98.342 0.1506 92.167 92.087 92.237 -6.1757 34 9 5 0 0 0 0.01958 1 65214 65214 63.961 37.077 1 68509000 1666 873 1167 1184 1857 1857 0.08915192891072365 ALVDQRELYL 10 Unmodified _ALVDQRELYL_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000561840.1_2_16:88923580-88926055:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.3377685546875 2 610.337695 1218.66084 0.50001 0.00030518 -0.15994 -9.762E-05 0.34007 0.00020756 610.337235067159 60.547 0.54348 60.547 60.199 60.743 0 55 23 4 0 0 0 0.075273 2 33735 33735;33850 59.052 15.28 1 10362000 1667 7619 1168 1185 1858;1859 1858 0.06025355223300721 ALVDQRELYL 10 Unmodified _ALVDQRELYL_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000561840.1_2_16:88923580-88926055:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.8408813476562 2 610.337695 1218.66084 -0.24831 -0.00015155 0.39898 0.00024351 0.15067 9.196E-05 610.3379253342149 61.027 0.25986 60.538 60.435 60.694 -0.48932 22 12 2 0 0 0 0.091475 1 33230 33230 63.227 19.455 1 10192000 1668 7619 1168 1185 1860 1860 0.06025355223300721 ALVDQRELYL 10 Unmodified _ALVDQRELYL_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENST00000561840.1_2_16:88923580-88926055:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3382568359375 2 610.337695 1218.66084 0.68999 0.00042113 -0.0961 -5.8653E-05 0.59389 0.00036248 610.3375661900536 67.331 0.54597 61.155 60.872 61.418 -6.1757 65 30 3 0 0 0 0.014982 2 43881 43750;43881 91.085 24.628 1 37594000 1669 7619 1168 1185 1861;1862 1862 0.06025355223300721 ALVESLEYV 9 Unmodified _ALVESLEYV_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7728881835938 2 511.773865 1021.53318 0.15431 7.8973E-05 0.059438 3.0419E-05 0.21375 0.00010939 511.7737759461721 70.142 0.23164 70.142 70.048 70.28 0 23 19 2 0 0 0 0.37804 1 39049 39049 13.508 0.97634 1 1717900 1670 2865 1169 1186 1863 1863 0.023272146292470097 ALVESLITV 9 Unmodified _ALVESLITV_ 0 0 0 ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7867736816406 2 472.786776 943.558998 0.29229 0.00013819 0.19181 9.0683E-05 0.4841 0.00022888 472.78686668450854 81.808 0.32044 81.808 81.631 81.952 0 36 19 2 0 0 0 0.10925 2 45424 45326;45424 32.117 13.982 1 1800900 1671 9784 1170 1187 1864;1865 1865 0.0849610887153176 ALVESLITV 9 Unmodified _ALVESLITV_ 0 0 0 ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7870788574219 2 472.786776 943.558998 0.71765 0.0003393 0.1471 6.9546E-05 0.86475 0.00040884 472.78679395182354 82.304 0.42786 81.808 81.582 82.01 -0.4952 42 17 3 0 0 0 0.03327 2 45032 45032;45128 53.576 4.1604 1 4616400 1672 9784 1170 1187 1866;1867 1866 0.0849610887153176 ALVFPVVST 9 Unmodified _ALVFPVVST_ 0 0 0 REV__ENST00000478059.1_1_2:9667906-9695734:-|nuORF REV__ENST00000478059.1_1_2:9667906-9695734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7759399414062 2 466.776211 931.537869 0.37268 0.00017396 -2.8023 -0.001308 -2.4296 -0.0011341 466.77508657689816 75.932 0.38773 75.455 75.276 75.664 -0.47714 21 16 2 0 0 0 0.39863 1 41568 41568 12.532 3.1841 1 587580 + 1673 21085 1171 1188 1868 1868 0.06936143562666075 ALVHYGGV 8 Unmodified _ALVHYGGV_ 0 0 0 ENSG00000091664|ENST00000263160|SLC17A6 ENSG00000091664|ENST00000263160|SLC17A6 ENSG00000091664|ENST00000263160|SLC17A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2252807617188 2 408.224146 814.433738 NaN NaN NaN NaN NaN NaN NaN 16.594 1 16.594 16.094 17.094 0 0 0 0 0.97444 1 8105 8105 2.8892 0 1 1674 1596 1172 1189 1869 1869 0.01909861525814449 ALVMCPTTSK 10 Unmodified _ALVMCPTTSK_ 0 0 0 REV__ENSG00000165156|ENST00000395571|ZHX1 REV__ENSG00000165156|ENST00000395571|ZHX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1946411132812 3 350.848922 1049.52494 -0.0047675 -1.6727E-06 2.1672 0.00076035 2.1624 0.00075868 350.85046958641686 38.012 0.37972 37.741 37.638 38.018 -0.27133 19 17 2 0 0 0 0.23821 1 20030 20030 2.086 0 1 1076900 + 1675 21987 1173 1190 1870 1870 0.0021562111660387018 ALVPFKAAL 9 Unmodified _ALVPFKAAL_ 0 0 0 REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2925415039062 2 465.294571 928.574589 NaN NaN NaN NaN NaN NaN NaN 39.959 1 39.964 39.464 40.464 0.0050545 0 0 0 0.46757 1 21297 21297 16.942 4.7016 1 + 1676 21047 1174 1191 1871 1871 0.10744440179223602 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7764282226562 2 464.776742 927.538931 0.26969 0.00012534 -0.58 -0.00026957 -0.31031 -0.00014423 464.7764774450563 41.88 0.26141 41.88 41.731 41.992 0 29 13 3 0 0 0 0.011671 1 22607 22607 75.761 27.415 1 7334900 1677 4553 1175 1192 1872 1872 0.07226357931551775 ALVQDLAKA 9 Unmodified _ALVQDLAKA_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7776794433594 2 464.776742 927.538931 1.45 0.00067394 0.35317 0.00016414 1.8032 0.00083809 464.77722447672596 47.458 0.36419 42.225 42.087 42.451 -5.2339 36 20 2 0 0 0 0.020973 1 29470 29470 62.573 15.652 1 15523000 1678 4553 1175 1192 1873 1873 0.07226357931551775 ALVQPLPTP 9 Unmodified _ALVQPLPTP_ 0 0 0 REV__ENSG00000165238|ENST00000427277|WNK2 REV__ENSG00000165238|ENST00000427277|WNK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 468.2332153320312 2 468.28166 934.548768 0.31805 0.00014894 -2.3633 -0.0011067 -2.0452 -0.00095774 468.2806155799244 38.534 0.26096 34.165 34.012 34.273 -4.3689 25 16 2 0 0 0 0.18482 1 22815 22815 18.146 6.5061 1 11167000 + 1679 21995 1176 1193 1874 1874 0.07887545936932838 ALVSRQDRI 9 Unmodified _ALVSRQDRI_ 0 0 0 REV__ENST00000502474.5_1_4:155669525-155670285:+|nuORF REV__ENST00000502474.5_1_4:155669525-155670285:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2091674804688 3 353.208607 1056.60399 0.02698 9.5295E-06 -0.072679 -2.5671E-05 -0.045699 -1.6141E-05 353.20852711599696 21.575 0.23543 21.588 21.457 21.692 0.013796 73 29 3 0 0 0 0.51218 1 11107 11107 7.1017 0 1 23173000 + 1680 19280 1177 1194 1875 1875 0.07795352457424087 ALVSSAGALY 10 Unmodified _ALVSSAGALY_ 0 0 0 nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2657165527344 2 476.260925 950.507297 1.2935 0.00061603 0.97041 0.00046217 2.2639 0.0010782 476.26154302328314 35.816 0.4263 31.623 31.394 31.82 -4.1928 66 26 3 0 0 0 0.1028 1 20755 20755 46.021 2.2486 1 20722000 1681 4466 1178 1195 1876 1876 0.03006365177623138 ALVSSLHLL 9 Unmodified _ALVSSLHLL_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7955627441406 2 476.794935 951.575317 0.6503 0.00031006 0.51519 0.00024564 1.1655 0.0005557 476.7952915059719 71.78 0.29341 71.304 71.147 71.441 -0.47609 26 11 3 0 0 0 0.2001 1 39292 39292 23.148 10.617 1 1531000 1682 8996 1179 1196 1877 1877 0.09759234828288754 ALVSSLHLL 9 Unmodified _ALVSSLHLL_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7951049804688 2 476.794935 951.575317 1.0841 0.00051691 0.60646 0.00028916 1.6906 0.00080607 476.7953380335881 91.005 0.78146 84.829 84.406 85.188 -6.1757 71 45 2 0 0 0 0.012158 3 60217 59943;60084;60217 74.396 38.352 1 13844000 1683 8996 1179 1196 1878;1879;1880 1880 0.09759234828288754 ALVSWVMDY 9 Unmodified _ALVSWVMDY_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2623901367188 2 542.26261 1082.51067 NaN NaN NaN NaN NaN NaN NaN 20.998 1 20.998 20.498 21.498 0 0 0 0 0.82015 1 10597 10597 5.2307 0 1 1684 3069 1180 1197 1881 1881 -0.02728708040035599 ALVSYLIRL 9 Unmodified _ALVSYLIRL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3329467773438 2 524.331685 1046.64882 0.16531 8.6675E-05 0.29119 0.00015268 0.4565 0.00023936 524.3321860807191 98.999 0.10716 92.823 92.752 92.859 -6.1757 11 6 2 0 0 0 0.015445 1 65823 65823 68.081 28.123 1 39417000 1685 8367 1181 1198 1882 1882 0.1273578327075029 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.R44W|1|0.15|ENSG00000049860|chr5:74685390-74685390|C/T|missense_variant ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2637023925781 2 450.263468 898.512382 0.034546 1.5555E-05 -0.89414 -0.0004026 -0.8596 -0.00038704 450.2628883672637 52.07 0.46815 52.07 51.908 52.376 0 48 20 4 0 0 0 0.078417 1 28752 28752 38.151 7.9264 1 24288000 1686 716 1182 1199 1883 1883 0.05906669040234647 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.R44W|1|0.15|ENSG00000049860|chr5:74685390-74685390|C/T|missense_variant ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.5187377929688 1 899.519659 898.512382 -0.31102 -0.00027977 0.15231 0.00013701 -0.1587 -0.00014276 899.5197751074446 52.066 0.33482 52.066 51.908 52.243 0 29 14 3 0 0 0 0.016184 1 28763 28763 67.344 3.781 1 8100800 1687 716 1182 1199 1884 1884 0.05906669040234647 ALVVQVAEA 9 Unmodified _ALVVQVAEA_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;HEXB|p.R44W|1|0.15|ENSG00000049860|chr5:74685390-74685390|C/T|missense_variant ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2639770507812 2 450.263468 898.512382 1.0914 0.00049143 0.17634 7.9399E-05 1.2678 0.00057083 450.26349035851604 60.213 0.438 54.098 53.852 54.29 -6.1147 51 22 3 0 0 0 0.016184 1 38638 38638 67.344 3.781 1 57693000 1688 716 1182 1199 1885 1885 0.05906669040234647 ALWAVLLLE 9 Unmodified _ALWAVLLLE_ 0 0 0 ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7 ENSG00000146205|ENST00000674324|ANO7 ENSG00000146205|ENST00000674324|ANO7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7904663085938 2 514.312961 1026.61137 0.11047 5.6815E-05 -1.9457 -0.0010007 -1.8353 -0.00094391 514.3123046693722 65.453 0.22519 64.969 64.876 65.101 -0.48428 14 10 2 0 0 0 0.203 1 35765 35765 9.3474 2.9933 1 882400 1689 5761 1183 1200 1886 1886 0.09912692005150348 ALWDKLFNL 9 Unmodified _ALWDKLFNL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8143310546875 2 560.313492 1118.61243 0.70332 0.00039408 -1.4556 -0.00081561 -0.75232 -0.00042154 560.8140144258006 100.62 0.19638 94.445 94.345 94.541 -6.1757 43 13 5 0 0 0 0.14 1 67312 67312 29.082 5.9332 1 205780000 1690 763 1184 1201 1887 1887 0.057869063740326965 ALWGFFPVL 9 Unmodified _ALWGFFPVL_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2946166992188 2 525.294571 1048.57459 1.262 0.00066292 -0.85689 -0.00045012 0.4051 0.0002128 525.2938807375257 102.62 0.12564 96.443 96.397 96.523 -6.1757 79 28 4 0 0 0 0.016115 1 68845 68845 67.413 42.014 1 67899000 1691 4563 1185 1202 1888 1888 0.05224440179222256 ALWGGYGLVL 10 Unmodified _ALWGGYGLVL_ 0 0 0 REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7915649414062 2 524.794935 1047.57532 0.40318 0.00021159 -2.5772 -0.0013525 -2.174 -0.0011409 524.7923381708301 84.739 0.34336 84.239 84.092 84.436 -0.49961 20 14 2 0 0 0 0.57332 2 46404 46342;46404 12.532 4.6214 1 492150 + 1692 29273 1186 1203 1889;1890 1890 0.05343234828274035 ALWGGYGLVL 10 Unmodified _ALWGGYGLVL_ 0 0 0 REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF REV__ENST00000603132.1_1_12:55196819-55197167:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.794935 1047.57532 0.40318 0.00021159 -2.5772 -0.0013525 -2.174 -0.0011409 524.7923381708301 84.739 0.34336 84.239 84.092 84.436 -0.49961 0 0 NaN 12.532 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 492150 + 1693 29273 1186 1203 0.05343234828274035 ALWKQLLEL 9 Unmodified _ALWKQLLEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.83642578125 2 557.336967 1112.65938 0.20648 0.00011508 -0.58725 -0.0003273 -0.38078 -0.00021222 557.3367886781097 87.603 0.24729 87.657 87.525 87.772 0.053352 13 10 2 0 0 0 0.018061 1 48720 48720 71.922 24.174 1 8980800 1694 16188 1187 1204 1891 1891 0.10755765925182459 ALWKQLLEL 9 Unmodified _ALWKQLLEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.338134765625 2 557.336967 1112.65938 0.41324 0.00023031 0.8833 0.0004923 1.2965 0.00072261 557.3374021898196 99.818 0.19972 93.642 93.541 93.74 -6.1757 27 14 2 0 0 0 0.082934 1 66602 66602 47.749 26.212 1 51207000 1695 16188 1187 1204 1892 1892 0.10755765925182459 ALWNEEALL 9 Unmodified _ALWNEEALL_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant;ENST00000424022.2_1_1:225594357-225599062:-|nuORF ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7798461914062 2 529.779482 1057.54441 0.37583 0.00019911 0.53649 0.00028422 0.91232 0.00048333 529.7796734458158 84.431 0.36411 84.431 84.225 84.589 0 47 16 4 0 0 0 0.14602 1 46834 46834 28.487 13.649 1 2741500 1696 5556 1188 1205 1893 1893 0.017940367233904908 ALWPAALRS 9 Unmodified _ALWPAALRS_ 0 0 0 REV__ENST00000608236.1_1_1:153950231-153950309:+|nuORF REV__ENST00000608236.1_1_1:153950231-153950309:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3008728027344 2 492.784902 983.55525 0.69994 0.00034492 -0.69716 -0.00034355 0.0027776 1.3688E-06 492.78469901776714 52.455 0.24828 52.021 51.891 52.139 -0.43367 18 12 2 0 0 0 0.18941 1 28282 28282 9.3474 0.75416 1 6239300 + 1697 29324 1189 1206 1894 1894 0.06281483888324146 ALWRFHHHL 9 Unmodified _ALWRFHHHL_ 0 0 0 ENST00000373381.8_2_1:34066505-34068064:-|nuORF ENST00000373381.8_2_1:34066505-34068064:-|nuORF ENST00000373381.8_2_1:34066505-34068064:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2268371582031 3 406.22107 1215.64138 NaN NaN NaN NaN NaN NaN NaN 103.12 1 103.01 102.51 103.51 -0.10458 0 0 0 0.86004 1 56249 56249 0.26902 0 1 1698 12413 1190 1207 1895 1895 0.042184885136975936 ALWRNSTI 8 Unmodified _ALWRNSTI_ 0 0 0 REV__ENSG00000023839|ENST00000647814|ABCC2 REV__ENSG00000023839|ENST00000647814|ABCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7669372558594 2 480.766709 959.518865 0.39504 0.00018992 1.0965 0.00052718 1.4916 0.0007171 480.7668178018668 68.541 0.23807 68.541 68.371 68.609 0 14 10 2 0 0 0 0.77907 1 38187 38187 10.183 1.5901 1 456460 + 1699 17122 1191 1208 1896 1896 0.03748606991609904 ALWWVLSL 8 Unmodified _ALWWVLSL_ 0 0 0 REV__ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron REV__ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.287353515625 2 494.286746 986.558939 0.61647 0.00030471 -0.85035 -0.00042032 -0.23388 -0.0001156 494.2864681189732 47.663 0.46999 47.663 47.405 47.875 0 28 21 2 0 0 0 0.57408 1 26182 26182 28.173 2.7739 1 1707300 + 1700 23480 1192 1209 1897 1897 0.06512153662174569 ALWWVLSL 8 Unmodified _ALWWVLSL_ 0 0 0 REV__ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron REV__ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2873229980469 2 494.286746 986.558939 0.97933 0.00048407 -0.72702 -0.00035935 0.25231 0.00012471 494.2867186498934 52.629 0.63438 46.895 46.635 47.269 -5.7345 65 34 2 0 0 0 0.55063 1 33193 33193 30.198 3.3147 1 75532000 + 1701 23480 1192 1209 1898 1898 0.06512153662174569 ALYAGFQAAIG 11 Unmodified _ALYAGFQAAIG_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.9598999023438 2 541.287474 1080.5604 NaN NaN NaN NaN NaN NaN NaN 15.207 1 15.193 14.693 15.693 -0.014067 0 0 0 0.94165 1 7453 7453 1.3295 0.63916 1 1702 10400 1193 1210 1899 1899 0.0233374296024067 ALYASPQP 8 Unmodified _ALYASPQP_ 0 0 0 ENST00000489446.1_1_2:23755466-23866061:+|nuORF;nc|ENSG00000119771|Q96CT2-2|KLHL29;ENSG00000119771|ENST00000486442|KLHL29 ENST00000489446.1_1_2:23755466-23866061:+|nuORF ENST00000489446.1_1_2:23755466-23866061:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.4360961914062 1 846.435595 845.428318 -0.32198 -0.00027254 -0.31874 -0.00026979 -0.64072 -0.00054233 846.4353611758298 70.866 0.31177 70.866 70.707 71.019 0 59 38 2 0 0 0 0.40035 1 39442 39442 44.407 0 1 2414300 1703 3466 1194 1211 1900 1900 -0.0005786205666709066 ALYASRLYL 9 Unmodified _ALYASRLYL_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3043823242188 2 535.305667 1068.59678 0.32419 0.00017354 -0.50773 -0.00027179 -0.18355 -9.8253E-05 535.3054587253469 60.396 0.34256 60.352 60.172 60.515 -0.04351 29 16 2 0 0 0 0.0086209 1 32919 32919 89.401 38.546 1 16112000 1704 16251 1195 1212 1901 1901 0.06522619856968959 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.784912109375 2 532.784764 1063.55498 0.44652 0.0002379 -0.41004 -0.00021846 0.036483 1.9437E-05 532.784560759042 48.039 0.31807 48.039 47.852 48.17 0 55 15 5 0 0 0 0.025842 1 26300 26300 57.722 28.64 1 99359000 1705 1033 1196 1213 1902 1902 0.025740193777892273 ALYDNVEKL 9 Unmodified _ALYDNVEKL_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7861938476562 2 532.784764 1063.55498 0.79021 0.00042101 1.5961 0.00085037 2.3863 0.0012714 532.7850699034162 54.785 0.42102 48.92 48.682 49.103 -5.8653 47 25 2 0 0 0 0.013041 2 34738 34738;34870 71.922 33.771 1 132790000 1706 1033 1196 1213 1903;1904 1903 0.025740193777892273 ALYEGLEQDK 10 Unmodified _ALYEGLEQDK_ 0 0 0 REV__ENSG00000171951|ENST00000305409|SCG2 REV__ENSG00000171951|ENST00000305409|SCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.28955078125 2 583.290411 1164.56627 0.0036601 2.1349E-06 -0.24562 -0.00014327 -0.24196 -0.00014113 583.2901773376973 70.193 0.29978 70.193 70.078 70.377 0 37 17 3 0 0 0 0.50944 1 39083 39083 15.847 5.6966 1 2310000 + 1707 22615 1197 1214 1905 1905 -0.009432033187067645 ALYEGLEQDK 10 Unmodified _ALYEGLEQDK_ 0 0 0 REV__ENSG00000171951|ENST00000305409|SCG2 REV__ENSG00000171951|ENST00000305409|SCG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.290411 1164.56627 0.0036601 2.1349E-06 -0.24562 -0.00014327 -0.24196 -0.00014113 583.2901773376973 70.193 0.29978 70.193 70.078 70.377 0 0 0 NaN 15.847 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2310000 + 1708 22615 1197 1214 -0.009432033187067645 ALYEKDNTY 9 Unmodified _ALYEKDNTY_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000584063.5_1_17:46048512-46051888:+|nuORF;ENST00000583182.5_1_17:46048501-46051888:+|nuORF;ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENSG00000108465|ENST00000338399|CDK5RAP3;ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENSG00000108465|ENST00000338399|CDK5RAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7610473632812 2 558.764029 1115.5135 NaN NaN NaN NaN NaN NaN NaN 49.859 1 49.859 49.359 50.359 0 0 0 0 0.39043 1 27459 27459 20.454 5.8719 1 1709 2571;13453 1198 1215 1906 1906 -0.03963161381534519 ALYEQSLHI 9 Unmodified _ALYEQSLHI_ 0 0 0 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2;ENST00000559016.1_1_15:49426483-49429634:-|nuORF nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.28466796875 2 537.284931 1072.55531 0.33268 0.00017874 0.31954 0.00017168 0.65222 0.00035043 537.2849399049372 53.469 0.24649 53.017 52.841 53.087 -0.45173 21 11 3 0 0 0 0.019303 1 28925 28925 64.236 37.353 1 1273500 1710 7451 1199 1216 1907 1907 0.021934390976639406 ALYEQSLHI 9 Unmodified _ALYEQSLHI_ 0 0 0 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2;ENST00000559016.1_1_15:49426483-49429634:-|nuORF nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MSMS AL20221201_MKP_PDAC_01 4 537.2861328125 2 537.284931 1072.55531 NaN NaN NaN NaN NaN NaN NaN 59.442 1 53.327 52.827 53.827 -6.1147 0 0 0 0.028486 1 38168 38168 68.081 38.999 1 1711 7451 1199 1216 1908 1908 0.021934390976639406 ALYEVDDL 8 Unmodified _ALYEVDDL_ 0 0 0 REV__ENSG00000177943|ENST00000317446|MAMDC4 REV__ENSG00000177943|ENST00000317446|MAMDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2301635742188 2 469.22929 936.444028 0.053735 2.5214E-05 1.2581 0.00059033 1.3118 0.00061554 469.2298349684931 40.63 0.2869 40.63 40.471 40.758 0 42 15 3 0 0 0 0.5953 2 21814 21814;21927 26.341 6.9023 1 46572000 + 1712 23010 1200 1217 1909;1910 1909 -0.02673620330290305 ALYEVDDL 8 Unmodified _ALYEVDDL_ 0 0 0 REV__ENSG00000177943|ENST00000317446|MAMDC4 REV__ENSG00000177943|ENST00000317446|MAMDC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.22929 936.444028 0.053735 2.5214E-05 1.2581 0.00059033 1.3118 0.00061554 469.2298349684931 40.63 0.2869 40.63 40.471 40.758 0 0.082586 -0.00020069 NaN 26.341 42 15 3 NaN NaN NaN NaN 0 NaN NaN 0 46572000 + 1713 23010 1200 1217 -0.02673620330290305 ALYEVDDL 8 Unmodified _ALYEVDDL_ 0 0 0 REV__ENSG00000177943|ENST00000317446|MAMDC4 REV__ENSG00000177943|ENST00000317446|MAMDC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 469.22929 936.444028 0.32251 0.00015133 1.3752 0.00064529 1.6977 0.00079662 469.2299339118639 40.98 0.27731 40.677 40.543 40.82 -0.30304 0.12958 -9.0762E-05 NaN 26.341 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 9183500 + 1714 23010 1200 1217 -0.02673620330290305 ALYHFNHSL 9 Unmodified _ALYHFNHSL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8543701171875 3 367.854053 1100.54033 1.2799 0.00047083 0.17552 6.4564E-05 1.4555 0.00053539 367.85390723139545 43.684 0.34203 38.919 38.724 39.066 -4.7648 31 20 3 0 0 0 0.03568 1 26565 26565 40.239 19.825 1 8419200 1715 4011 1201 1218 1911 1911 -0.005920079796851496 ALYHLAIKL 9 Unmodified _ALYHLAIKL_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MSMS AL20221201_MKP_PDAC_01 4 521.3275756835938 2 521.326402 1040.63825 NaN NaN NaN NaN NaN NaN NaN 88.444 1 82.268 81.768 82.768 -6.1757 0 0 0 0.029091 1 58351 58351 67.344 29.168 1 1716 543 1202 1219 1912 1912 0.11955800616306078 ALYPNVVQV 9 Unmodified _ALYPNVVQV_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7846069335938 2 501.784567 1001.55458 -0.22243 -0.00011161 1.0627 0.00053324 0.84026 0.00042163 501.78509186839375 65.617 0.31018 65.132 64.979 65.289 -0.48428 31 13 3 0 0 0 0.12841 1 35813 35813 30.225 7.0764 1 4577400 1717 6964 1203 1220 1913 1913 0.05386644448617517 ALYPNVVQV 9 Unmodified _ALYPNVVQV_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;ENST00000497514.2_1_2:39033679-39046075:-|nuORF ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7855224609375 2 501.784567 1001.55458 1.0555 0.00052962 -1.111 -0.00055748 -0.055516 -2.7857E-05 501.784290971321 72.304 0.40962 66.128 65.941 66.351 -6.1757 31 20 2 0 0 0 0.038285 1 47283 47283 50.855 23.226 1 12995000 1718 6964 1203 1220 1914 1914 0.05386644448617517 ALYQSDPSF 9 Unmodified _ALYQSDPSF_ 0 0 0 REV__ENSG00000140395|ENST00000267973|SKIC8 REV__ENSG00000140395|ENST00000267973|SKIC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7421875 2 514.24019 1026.46583 0.18767 9.6506E-05 -0.22812 -0.00011731 -0.040456 -2.0804E-05 514.239963539292 61.673 0.5403 61.673 61.411 61.951 0 79 24 4 0 0 0 0.37804 1 34490 34490 13.508 1.8676 1 17493000 + 1719 20466 1204 1221 1915 1915 -0.046348155816986036 ALYSAEHGL 9 Unmodified _ALYSAEHGL_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7425537109375 2 480.742899 959.471246 0.76078 0.00036574 -0.66861 -0.00032143 0.092169 4.431E-05 480.74256259070256 36.586 0.34773 36.586 36.448 36.796 0 30 16 2 0 0 0 0.03327 1 19402 19402 53.576 23.351 1 3221900 1720 8655 1205 1222 1916 1916 -0.010110919992371237 ALYSELLAV 9 Unmodified _ALYSELLAV_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7796936035156 2 489.778951 977.543348 0.2018 9.8836E-05 2.0488 0.0010034 2.2506 0.0011023 489.7798013263883 85.558 0.19299 85.558 85.508 85.701 0 11 7 2 0 0 0 0.46577 1 47448 47448 9.3474 2.9933 1 294520 1721 2211 1206 1223 1917 1917 0.053678223544807224 ALYTSGHLL 9 Unmodified _ALYTSGHLL_ 0 0 0 ENSG00000167755|ENST00000310157|KLK6 ENSG00000167755|ENST00000310157|KLK6 ENSG00000167755|ENST00000310157|KLK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7695922851562 2 487.768917 973.523281 0.61831 0.00030159 0.18146 8.8512E-05 0.79977 0.0003901 487.7688562929484 49.779 0.23403 49.779 49.649 49.883 0 22 10 3 0 0 0 0.045537 1 27387 27387 46.921 0 1 4897800 1722 7665 1207 1224 1918 1918 0.03546071414530161 ALYTVIETV 9 Unmodified _ALYTVIETV_ 0 0 0 nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3 nc|ENSG00000165476|Q6NUK4-2|REEP3 nc|ENSG00000165476|Q6NUK4-2|REEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7848815917969 2 504.784233 1007.55391 0.24006 0.00012118 0.52634 0.00026569 0.7664 0.00038687 504.7846407359479 73.168 0.37597 72.692 72.473 72.849 -0.47588 44 16 4 0 0 0 0.045537 1 40037 40037 46.921 18.434 1 4939000 1723 7342 1208 1225 1919 1919 0.05043805008904201 ALYTVIETV 9 Unmodified _ALYTVIETV_ 0 0 0 nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3 nc|ENSG00000165476|Q6NUK4-2|REEP3 nc|ENSG00000165476|Q6NUK4-2|REEP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7842102050781 2 504.784233 1007.55391 1.0569 0.00053351 0.46116 0.00023279 1.5181 0.0007663 504.7840888734565 81.233 0.56967 75.058 74.808 75.378 -6.1757 76 32 3 0 0 0 0.078417 2 53200 53200;53326 38.151 11.268 1 40109000 1724 7342 1208 1225 1920;1921 1920 0.05043805008904201 ALYTVLHRL 9 Unmodified _ALYTVLHRL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF;ENST00000585574.5_1_17:73837076-73839803:-|nuORF;ENST00000587504.5_1_17:73835995-73839803:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5538635253906 3 362.553715 1084.63931 1.3141 0.00047644 0.44559 0.00016155 1.7597 0.00063799 362.5539933124449 50.278 0.24396 50.229 50.087 50.331 -0.048824 21 11 3 0 0 0 0.14594 1 27189 27189 28.495 14.089 1 1979900 1725 1623 1209 1226 1922 1922 0.10038014985207155 ALYVAVVNV 9 Unmodified _ALYVAVVNV_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.5546264648438 1 947.556044 946.548768 0.62056 0.00058802 -1.3305 -0.0012608 -0.70997 -0.00067274 947.5543971003855 73.788 0.20791 73.312 73.187 73.394 -0.47588 16 9 2 0 0 0 0.078417 1 40359 40359 38.151 13.477 1 1815000 1726 2352 1210 1227 1923 1923 0.07335545936950894 ALYVAVVNV 9 Unmodified _ALYVAVVNV_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2813720703125 2 474.28166 946.548768 0.81073 0.00038452 -1.0928 -0.00051828 -0.28203 -0.00013376 474.28128623004943 73.776 0.39475 73.3 73.092 73.487 -0.47588 30 18 2 0 0 0 0.023761 1 40365 40365 59.795 25.608 1 2558400 1727 2352 1210 1227 1924 1924 0.07335545936950894 ALYVAVVNV 9 Unmodified _ALYVAVVNV_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2821350097656 2 474.28166 946.548768 1.1797 0.00055951 0.43834 0.0002079 1.618 0.00076741 474.28181398096115 81.484 0.29427 75.308 75.133 75.427 -6.1757 25 16 2 0 0 0 0.040472 1 53462 53462 49.669 13.625 1 10702000 1728 2352 1210 1227 1925 1925 0.07335545936950894 AMAARPHSI 9 Unmodified _AMAARPHSI_ 0 0 0 nc|ENSG00000122566|P22626|HNRNPA2B1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF nc|ENSG00000122566|P22626|HNRNPA2B1 nc|ENSG00000122566|P22626|HNRNPA2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.25390625 2 477.252911 952.49127 1.1605 0.00055386 1.1045 0.00052714 2.265 0.001081 477.2532989672411 19.964 0.21492 17.307 17.205 17.42 -2.6564 16 11 2 0 0 0 0.10247 1 10622 10622 32.786 4.6125 1 1375000 1729 16163 1211 1228 1926 1926 0.013123804597285016 AMADVSERTL 10 Unmodified _AMADVSERTL_ 0 0 0 nc|ENSG00000175701|Q8NCU8-1|MTLN nc|ENSG00000175701|Q8NCU8-1|MTLN nc|ENSG00000175701|Q8NCU8-1|MTLN MSMS AL20221201_MKP_PDAC_01 4 546.7728271484375 2 546.771331 1091.52811 NaN NaN NaN NaN NaN NaN NaN 80.058 1 73.882 73.382 74.382 -6.1757 0 0 0 0.71851 1 52504 52504 15.847 0 1 1730 16396 1212 1229 1927 1927 -0.013994125050203365 AMAEGKITV 9 Unmodified _AMAEGKITV_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2495422363281 2 460.249503 918.484453 0.88977 0.00040952 0.98883 0.00045511 1.8786 0.00086463 460.25000014462364 39.113 0.37015 34.663 34.488 34.858 -4.4509 38 23 2 0 0 0 0.05483 1 23177 23177 43.772 9.3707 1 13968000 1731 3399 1213 1230 1928 1928 0.02195022788487222 AMAEMKVVL 9 2 Oxidation (M) _AM(Oxidation (M))AEM(Oxidation (M))KVVL_ AM(1)AEM(1)KVVL AM(54)AEM(54)KVVL 0 0 2 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENSG00000186526|ENST00000612078|CYP4F8;ENSG00000186204|ENST00000550308|CYP4F12;ENST00000518629.7_2_19:15807188-15807892:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.264404296875 2 512.264296 1022.51404 -0.69853 -0.00035783 -0.10561 -5.4101E-05 -0.80414 -0.00041193 512.2647660380204 32.788 0.6673 32.788 32.639 33.306 0 74 33 3 0 0 0 0.032796 2 17110 17110;17214 53.833 7.8118 1 6091400 1732 8158;16462 1214 1231 1929;1930 1929 1381;1382 0.0036821874232373375 AMAEMKVVL 9 Unmodified _AMAEMKVVL_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENSG00000186526|ENST00000612078|CYP4F8;ENSG00000186204|ENST00000550308|CYP4F12;ENST00000518629.7_2_19:15807188-15807892:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7502136230469 2 496.269381 990.524209 1.5459 0.0007672 -1.0739 -0.00053295 0.47203 0.00023425 496.2686235772555 62.442 0.47125 56.266 56.073 56.544 -6.1757 42 24 2 0 0 0 0.18521 1 40362 40362 16.942 0 1 18651000 1733 8158;16462 1214 1232 1931 1931 0.028568264675527644 AMAENILAA 9 Unmodified _AMAENILAA_ 0 0 0 ENSG00000197183|ENST00000621426|NOL4L;nc|ENSG00000197183|Q96MY1|NOL4L;nc|ENSG00000197183|Q96MY1-2|NOL4L ENSG00000197183|ENST00000621426|NOL4L ENSG00000197183|ENST00000621426|NOL4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2345275878906 2 452.233853 902.453153 1.5457 0.00069903 -0.40375 -0.00018259 1.142 0.00051644 452.23361446094304 62.375 0.31978 56.2 56.122 56.442 -6.1757 21 16 2 0 0 0 0.047196 1 40318 40318 46.021 17.534 1 11267000 1734 9925 1215 1233 1932 1932 -0.0019755024560481615 AMAKPDCIITC 11 2 Carbamidomethyl (C),Oxidation (M) _AM(Oxidation (M))AKPDC(Carbamidomethyl (C))IITC(Carbamidomethyl (C))_ AMAKPDC(1)IITC(1) AM(1)AKPDCIITC AMAKPDC(48)IITC(48) AM(48)AKPDCIITC 0 2 1 ENST00000435729.1_1_2:152042805-152043093:+|nuORF;nc|ENSG00000293165|A8MUU1|FABP5P3;ENST00000477993.1_1_7:152139729-152140032:+|nuORF;ENSG00000164687|ENST00000297258|FABP5 ENST00000435729.1_1_2:152042805-152043093:+|nuORF ENST00000435729.1_1_2:152042805-152043093:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8101196289062 2 648.293259 1294.57196 0.36473 0.00023645 1.6467 0.0010675 2.0114 0.001304 648.2932299909813 36.47 0.12626 32.277 32.202 32.328 -4.1928 9 7 2 0 0 0 0.06459 2 21263 21263;21293 47.732 22.741 1 7548300 1735 7228 1216 1234 1933;1934 1933 707;708 1251 -0.06353887394539015 AMAKPDCIITC 11 2 Carbamidomethyl (C) _AMAKPDC(Carbamidomethyl (C))IITC(Carbamidomethyl (C))_ AMAKPDC(1)IITC(1) AMAKPDC(95)IITC(95) 0 2 0 ENST00000435729.1_1_2:152042805-152043093:+|nuORF;nc|ENSG00000293165|A8MUU1|FABP5P3;ENST00000477993.1_1_7:152139729-152140032:+|nuORF;ENSG00000164687|ENST00000297258|FABP5 ENST00000435729.1_1_2:152042805-152043093:+|nuORF ENST00000435729.1_1_2:152042805-152043093:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.2955932617188 2 640.295801 1278.57705 0.42837 0.00027429 -0.47245 -0.00030251 -0.044076 -2.8221E-05 640.2958809419264 43.841 0.3632 39.076 38.857 39.22 -4.7648 52 22 3 0 0 0 5.2027E-06 1 26627 26627 94.909 68.641 1 17283000 1736 7228 1216 1235 1935 1935 707;708 -0.05109583531930184 AMALRLHEKL 10 Unmodified _AMALRLHEKL_ 0 0 0 REV__nc|ENSG00000100106|Q9H2D6-5|TRIOBP REV__nc|ENSG00000100106|Q9H2D6-5|TRIOBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2317199707031 3 394.565626 1180.67505 -0.24397 -9.6261E-05 -2.7142 -0.0010709 -2.9581 -0.0011672 394.564562975142 37.388 0.29071 37.409 37.327 37.618 0.021545 17 13 2 0 0 0 0.23195 1 19832 19832 12.873 4.1272 1 3082800 + 1737 18015 1217 1236 1936 1936 0.0919372917057899 AMASWGSCCLL 11 Unmodified _AMASWGSCCLL_ 0 0 0 REV__ENST00000261318.4_1_12:117152555-117152831:-|nuORF REV__ENST00000261318.4_1_12:117152555-117152831:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1660461425781 3 381.166146 1140.47661 0.24575 9.3672E-05 1.2756 0.00048623 1.5214 0.00057991 381.16654294156587 36.989 0.21967 36.989 36.897 37.117 0 24 10 3 0 0 0 0.73115 1 19704 19704 0.45452 0 1 1124400 + 1738 24980 1218 1237 1937 1937 -0.0880119579494476 AMDAVCAKV 9 Carbamidomethyl (C) _AMDAVC(Carbamidomethyl (C))AKV_ AMDAVC(1)AKV AMDAVC(46)AKV 0 1 0 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;ENST00000338447.10_1_11:63706445-63713674:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.7337646484375 2 482.733163 963.451773 NaN NaN NaN NaN NaN NaN NaN 36.098 1 31.905 31.405 32.405 -4.1928 0 0 0 0.091025 1 21040 21040 45.7 19.358 1 1739 2726 1219 1238 1938 1938 281 -0.03141507606005689 AMDLPDVTL 9 Unmodified _AMDLPDVTL_ 0 0 0 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7466125488281 2 487.746793 973.479033 -0.40273 -0.00019643 0.45934 0.00022404 0.056611 2.7612E-05 487.7473535491326 77.372 0.38456 76.89 76.647 77.032 -0.4826 38 17 3 0 0 0 0.55144 1 42417 42417 4.3292 0 1 5133200 1740 1979 1220 1239 1939 1939 -0.008767007939809446 AMDPLITAI 9 Unmodified _AMDPLITAI_ 0 0 0 REV__GTF3C2|p.A732T|1|0.26|ENSG00000115207|chr2:27328530-27328530|C/T|missense_variant REV__GTF3C2|p.A732T|1|0.26|ENSG00000115207|chr2:27328530-27328530|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7594604492188 2 472.759704 943.504854 NaN NaN NaN NaN NaN NaN NaN 87.096 1 86.592 86.092 87.092 -0.50423 0 0 0 0.84564 1 47649 47649 2.0598 0 1 + 1741 29357 1221 1240 1940 1940 0.030841934482850775 AMFDKKVQL 9 Unmodified _AMFDKKVQL_ 0 0 0 ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM ENSG00000182253|ENST00000336292|SYNM ENSG00000182253|ENST00000336292|SYNM MSMS AL20221201_MKP_PDAC_01 4 360.5351257324219 3 360.535444 1078.5845 NaN NaN NaN NaN NaN NaN NaN 46.521 1 41.44 40.94 41.94 -5.0805 0 0 0 0.025979 1 28757 28757 63.961 27.454 1 1742 9036 1222 1241 1941 1941 0.04835260122285945 AMFGKLMTI 9 2 Oxidation (M) _AM(Oxidation (M))FGKLM(Oxidation (M))TI_ AM(1)FGKLM(1)TI AM(76)FGKLM(76)TI 0 0 2 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2672119140625 2 522.266838 1042.51912 0.53606 0.00027996 -0.033567 -1.7531E-05 0.50249 0.00026243 522.2671089371632 47.562 0.32272 47.209 47.064 47.387 -0.3526 35 15 3 0 0 0 0.011671 1 25487 25487 75.761 42.975 1 10670000 1743 3605 1223 1242 1942 1942 636;637 -0.00043477395047375467 AMFGKLMTI 9 2 Oxidation (M) _AM(Oxidation (M))FGKLM(Oxidation (M))TI_ AM(1)FGKLM(1)TI AM(42)FGKLM(42)TI 0 0 2 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.265869140625 2 522.266838 1042.51912 0.77694 0.00040577 -0.95385 -0.00049817 -0.17691 -9.2397E-05 522.2665776258464 47.312 0.31129 47.274 47.1 47.411 -0.038647 47 14 4 0 0 0 0.06294 1 25433 25433 41.84 25.992 1 8469500 1744 3605 1223 1242 1943 1943 636;637 -0.00043477395047375467 AMFGKLMTI 9 Unmodified _AMFGKLMTI_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2712097167969 2 506.271924 1010.52929 0.024506 1.2407E-05 0.018219 9.2236E-06 0.042725 2.163E-05 506.27177635014334 93.245 0.46538 87.069 86.754 87.22 -6.1757 55 33 2 0 0 0 0.047788 2 61693 61551;61693 45.7 20.3 1 18096000 1745 3605 1223 1243 1944;1945 1945 0.02445130330181655 AMGMIIDVF 9 Unmodified _AMGMIIDVF_ 0 0 0 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-MSMS AL20221201_MKP_PDAC_01 4 996.4940795898438 1 996.489287 995.48201 1.2977 0.0012932 0.92756 0.00092431 2.2253 0.0022175 996.4907607487391 101 0.089531 94.823 94.78 94.869 -6.1757 7 4 2 0 0 0 0.058206 1 67698 67698 42.968 16.627 1 9450300 1746 7111 1224 1244 1946 1946 -0.01591148940815401 AMGTALMMEGL 11 Unmodified _AMGTALMMEGL_ 0 0 0 ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2;RNF214-SIDT2|1|fusion ENSG00000149577|ENST00000324225|SIDT2;RNF214-SIDT2|1|fusion RNF214-SIDT2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5108642578125 3 375.509801 1123.50757 0.71206 0.00026739 0.71181 0.00026729 1.4239 0.00053468 375.5101660999506 46.112 0.27445 46.112 45.957 46.232 0 28 12 3 0 0 0 0.48615 1 25171 25171 13.519 2.6197 1 5271700 1747 30150;6022 1225 1245 1947 1947 -0.049240424806839656 AMGTALMMEGL 11 Unmodified _AMGTALMMEGL_ 0 0 0 ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2;RNF214-SIDT2|1|fusion ENSG00000149577|ENST00000324225|SIDT2;RNF214-SIDT2|1|fusion RNF214-SIDT2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5107727050781 3 375.509801 1123.50757 0.54011 0.00020282 0.80698 0.00030303 1.3471 0.00050585 375.5100760103399 46.395 0.21398 46.058 45.976 46.19 -0.33665 15 10 2 0 0 0 0.58219 1 24830 24830 9.7643 0 1 7451900 1748 30150;6022 1225 1245 1948 1948 -0.049240424806839656 AMIDQVLEL 9 Oxidation (M) _AM(Oxidation (M))IDQVLEL_ AM(1)IDQVLEL AM(71)IDQVLEL 0 0 1 ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD ENSG00000169660|ENST00000327949|HEXD ENSG00000169660|ENST00000327949|HEXD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.273193359375 2 524.273175 1046.5318 0.51559 0.00027031 -0.45718 -0.00023969 0.058411 3.0623E-05 524.2730741986911 75.428 0.62893 75.428 75.226 75.855 0 80 26 4 0 0 0 0.013323 1 42097 42097 71.134 18.865 1 7438100 1749 7896 1226 1246 1949 1949 1339 0.01039257268826077 AMIDQVLEL 9 Oxidation (M) _AM(Oxidation (M))IDQVLEL_ 0 0 1 ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD ENSG00000169660|ENST00000327949|HEXD ENSG00000169660|ENST00000327949|HEXD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.273175 1046.5318 0.24499 0.00012844 1.3633 0.00071474 1.6083 0.00084318 524.2721990600771 76.086 0.41927 75.607 75.393 75.812 -0.47945 0.089233 0.0017027 NaN 71.134 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 1838900 1750 7896 1226 1246 1339 0.01039257268826077 AMIDQVLEL 9 Unmodified _AMIDQVLEL_ 0 0 0 ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD ENSG00000169660|ENST00000327949|HEXD ENSG00000169660|ENST00000327949|HEXD MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.27685546875 2 516.275718 1030.53688 1.451 0.00074912 -0.71872 -0.00037106 0.73228 0.00037806 516.2752969610708 98.236 0.36853 92.06 91.924 92.293 -6.1757 42 24 2 0 0 0 0.016184 2 65124 65124;65262 67.344 26.287 1 17075000 1751 7896 1226 1247 1950;1951 1950 0.022835611314576454 AMIELVERL 9 Unmodified _AMIELVERL_ 0 0 0 TRIM44-CCDC86|1|fusion;ENSG00000166326|ENST00000299413|TRIM44 TRIM44-CCDC86|1|fusion TRIM44-CCDC86|1|fusion MSMS AL20221201_MKP_PDAC_01 4 537.3030395507812 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 90.529 1 84.353 83.853 84.853 -6.1757 0 0 0 0.24069 1 59806 59806 36.506 7.4246 1 1752 7470 1227 1248 1952 1952 0.061672427767234694 AMIELVERL 9 Unmodified _AMIELVERL_ 0 0 0 TRIM44-CCDC86|1|fusion;ENSG00000166326|ENST00000299413|TRIM44 TRIM44-CCDC86|1|fusion TRIM44-CCDC86|1|fusion MSMS AL20221201_MKP_PDAC_01 4 537.3046264648438 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 90.717 1 84.541 84.041 85.041 -6.1757 0 0 0 0.055375 1 59937 59937 67.838 36.57 1 1753 7470 1227 1248 1953 1953 0.061672427767234694 AMIRGGHV 8 Unmodified _AMIRGGHV_ 0 0 0 ENSG00000083720|ENST00000196371|OXCT1;FRMD4B-OXCT1|1|fusion ENSG00000083720|ENST00000196371|OXCT1 ENSG00000083720|ENST00000196371|OXCT1 MSMS AL20221201_MKP_PDAC_01 4 420.7294921875 2 420.729072 839.443591 NaN NaN NaN NaN NaN NaN NaN 46.04 1 41.085 40.585 41.585 -4.9549 0 0 0 0.88073 1 28365 28365 19.439 4.8573 1 1754 1370 1228 1249 1954 1954 0.017447262595510438 AMKAEFNITLI 11 Unmodified _AMKAEFNITLI_ 0 0 0 ENSG00000166825|ENST00000300060|ANPEP ENSG00000166825|ENST00000300060|ANPEP ENSG00000166825|ENST00000300060|ANPEP MSMS AL20221201_MKP_PDAC_01 4 417.5653686523438 3 417.565291 1249.67404 NaN NaN NaN NaN NaN NaN NaN 44.83 1 39.978 39.478 40.478 -4.852 0 0 0 0.82644 1 27416 27416 8.7518 0 1 1755 7535 1229 1250 1955 1955 0.05919470011008343 AMKHVAVTI 9 Unmodified _AMKHVAVTI_ 0 0 0 REV__ENSG00000134248|ENST00000602318|LAMTOR5 REV__ENSG00000134248|ENST00000602318|LAMTOR5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.2401123046875 2 485.281137 968.547722 0.64313 0.0003121 -0.0216 -1.0482E-05 0.62153 0.00030162 485.2810738307367 53.16 0.44278 47.356 47.216 47.659 -5.8042 39 27 2 0 0 0 0.1325 1 33628 33628 32.305 2.0807 1 29484000 + 1756 19966 1230 1251 1956 1956 0.062190082963979876 AMKPWLFNI 9 Unmodified _AMKPWLFNI_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3070068359375 2 560.304613 1118.59467 0.50476 0.00028282 2.0917 0.001172 2.5965 0.0014548 560.306567274894 63.329 0.35021 62.843 62.665 63.016 -0.48617 46 15 4 0 0 0 0.41742 1 34619 34619 11.64 3.047 1 3502700 1757 14031 1231 1252 1957 1957 0.040118678475437264 AMLHWPSSS 9 Unmodified _AMLHWPSSS_ 0 0 0 REV__ENST00000455372.2_1_19:2736989-2737118:-|nuORF REV__ENST00000455372.2_1_19:2736989-2737118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2388305664062 2 508.236927 1014.4593 NaN NaN NaN NaN NaN NaN NaN 15.289 1 15.289 14.789 15.789 0 0 0 0 0.82739 1 7352 7352 4.3292 0.73274 1 + 1758 27241 1232 1253 1958 1958 -0.04735032014070839 AMLRLIPSL 9 Unmodified _AMLRLIPSL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7960815429688 2 507.312438 1012.61032 1.14 0.00057831 -0.18763 -9.5189E-05 0.95232 0.00048312 507.31273258936534 98.467 0.14529 92.291 92.163 92.308 -6.1757 14 9 2 0 0 0 0.17729 1 65221 65221 16.149 0.30192 1 7305400 1759 9907 1233 1254 1959 1959 0.10452154364600119 AMLTVLHEI 9 Oxidation (M) _AM(Oxidation (M))LTVLHEI_ AM(1)LTVLHEI AM(42)LTVLHEI 0 0 1 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7832641601562 2 521.78371 1041.55287 0.18964 9.8949E-05 0.81954 0.00042762 1.0092 0.00052657 521.7840533741318 56.379 0.40076 56.379 56.284 56.685 0 31 17 2 0 0 0 0.06187 1 31368 31368 42.095 19.358 1 3311200 1760 2874 1234 1255 1960 1960 498 0.03375267368346613 AMMSIFSCVF 10 Unmodified _AMMSIFSCVF_ 0 0 0 L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2533569335938 2 568.252874 1134.49119 0.37523 0.00021323 3.8849 0.0022076 4.2602 0.0024208 568.2546827711791 58.987 0.27118 58.987 58.877 59.148 0 18 11 2 0 0 0 0.52888 1 32867 32867 14.838 2.3067 1 1583400 1761 15958 1235 1256 1961 1961 -0.07067123646788787 AMMSIFSCVF 10 Unmodified _AMMSIFSCVF_ 0 0 0 L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|116|2|anti-sense MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.252874 1134.49119 0.4862 0.00027628 6.4124 0.0036439 6.8986 0.0039201 568.7573493810252 59.601 0.18394 59.11 58.968 59.151 -0.49079 0.061745 0.001639 NaN 14.838 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1173200 1762 15958 1235 1256 -0.07067123646788787 AMNDILAQV 9 Oxidation (M) _AM(Oxidation (M))NDILAQV_ AM(1)NDILAQV AM(72)NDILAQV 0 0 1 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENST00000565009.5_1_16:71790048-71805048:-|nuORF ENSG00000166747|ENST00000299980|AP1G1 ENSG00000166747|ENST00000299980|AP1G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7494201660156 2 495.749867 989.485181 -0.23944 -0.0001187 -1.4343 -0.00071108 -1.6738 -0.00082978 495.7493672750049 56.165 0.25595 56.165 56.028 56.284 0 22 11 3 0 0 0 0.013041 1 31214 31214 71.922 28.064 1 4248100 1763 7526 1236 1257 1962 1962 1291 -0.00998182562443617 AMNGHVPAV 9 Unmodified _AMNGHVPAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2256774902344 2 448.226362 894.438172 0.75904 0.00034022 -2.1082 -0.00094496 -1.3492 -0.00060474 448.22628298188033 35.371 0.2634 31.276 31.12 31.384 -4.0951 27 15 3 0 0 0 0.095405 1 20482 20482 34.102 7.7612 1 8354800 1764 4333 1237 1258 1963 1963 -0.013269973229398602 AMNSQILEV 9 Oxidation (M) _AM(Oxidation (M))NSQILEV_ AM(1)NSQILEV AM(61)NSQILEV 0 0 1 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7564086914062 2 510.755149 1019.49575 0.30498 0.00015577 -0.27554 -0.00014073 0.02944 1.5037E-05 510.7553091068523 50.387 0.29923 50.387 50.282 50.582 0 22 13 3 0 0 0 0.022193 1 27775 27775 61.357 23.383 1 2922100 1765 9717 1238 1259 1964 1964 1566 -0.013221999080087699 AMPINLVSF 9 Unmodified _AMPINLVSF_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2684936523438 2 496.267696 990.520839 1.3515 0.00067072 0.48537 0.00024087 1.8369 0.00091159 496.268227984514 96.749 0.87682 90.573 90.069 90.946 -6.1757 68 51 2 0 0 0 0.32871 1 64353 64353 15.847 0 1 20456000 + 1766 23975 1239 1260 1965 1965 0.02519899685216842 AMPMRLLYL 9 Unmodified _AMPMRLLYL_ 0 0 0 ENSG00000130368|ENST00000674077|MAS1 ENSG00000130368|ENST00000674077|MAS1 ENSG00000130368|ENST00000674077|MAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3075561523438 2 554.306298 1106.59804 0.80505 0.00044625 -0.11803 -6.5426E-05 0.68702 0.00038082 554.30625695751 73.949 0.38255 73.949 73.738 74.121 0 48 16 4 0 0 0 0.32871 1 41099 41099 15.847 0.5987 1 5687400 1767 4208 1240 1261 1966 1966 0.04900794629884331 AMQEYIAVV 9 Oxidation (M) _AM(Oxidation (M))QEYIAVV_ AM(1)QEYIAVV AM(50)QEYIAVV 0 0 1 ENSG00000230124|ENST00000367595|ACBD6 ENSG00000230124|ENST00000367595|ACBD6 ENSG00000230124|ENST00000367595|ACBD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2613525390625 2 520.260068 1038.50558 NaN NaN NaN NaN NaN NaN NaN 55.58 1 55.58 55.08 56.08 0 0 0 0 0.074615 1 30881 30881 49.933 27.197 1 1768 10612 1241 1262 1967 1967 1704 -0.012130119026551256 AMQKIYQTF 9 Oxidation (M) _AM(Oxidation (M))QKIYQTF_ AM(1)QKIYQTF AM(65)QKIYQTF 0 0 1 nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58 nc|ENSG00000139496|Q9BVL2-2|NUP58 nc|ENSG00000139496|Q9BVL2-2|NUP58 MSMS AL20221201_MKP_PDAC_01 4 573.2860717773438 2 573.286617 1144.55868 NaN NaN NaN NaN NaN NaN NaN 42.304 1 37.62 37.12 38.12 -4.6846 0 0 0 0.032808 1 25540 25540 65.235 41.214 1 1769 5159 1242 1263 1968 1968 946 -0.007816341199941235 AMQKIYQTF 9 Unmodified _AMQKIYQTF_ 0 0 0 nc|ENSG00000139496|Q9BVL2-2|NUP58;ENST00000466694.5_1_13:25875911-25912925:+|nuORF;nc|ENSG00000139496|Q9BVL2-3|NUP58;ENSG00000139496|ENST00000381736|NUP58 nc|ENSG00000139496|Q9BVL2-2|NUP58 nc|ENSG00000139496|Q9BVL2-2|NUP58 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7673950195312 2 565.289159 1128.56377 1.2331 0.00069706 0.15957 9.0201E-05 1.3927 0.00078726 565.2891522405549 50.622 0.22197 45.083 44.914 45.136 -5.5391 19 13 2 0 0 0 0.20528 1 31766 31766 4.756 0 1 32531000 1770 5159 1242 1264 1969 1969 0.004626697426374449 AMQNLFCIAY 10 Unmodified _AMQNLFCIAY_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2734985351562 2 587.275195 1172.53584 0.18616 0.00010933 -0.059553 -3.4974E-05 0.12661 7.4355E-05 587.2751659675679 54.14 0.3761 53.673 53.446 53.822 -0.46664 45 18 3 0 0 0 0.44373 1 29273 29273 19.257 19.257 1 6304800 + 1771 19008 1243 1265 1970 1970 -0.04352976509107975 AMQNLFCIAY 10 Unmodified _AMQNLFCIAY_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 587.275195 1172.53584 0.36757 0.00021587 -0.20936 -0.00012295 0.15821 9.2915E-05 587.2748838433962 53.43 0.40528 53.43 53.221 53.627 0 -0.12127 -8.9016E-05 NaN 19.257 49 18 3 NaN NaN NaN NaN 0 NaN NaN 0 15121000 + 1772 19008 1243 1265 -0.04352976509107975 AMQSRLATL 9 Oxidation (M) _AM(Oxidation (M))QSRLATL_ AM(1)QSRLATL AM(50)QSRLATL 0 0 1 nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7716979980469 2 503.771134 1005.52771 -0.66409 -0.00033455 0.69431 0.00034977 0.030218 1.5223E-05 503.7719023336721 32.253 0.25023 32.253 32.105 32.355 0 20 12 2 0 0 0 0.040683 1 16840 16840 49.554 16.769 1 2504200 1773 3138 1244 1266 1971 1971 556 0.0251721256579458 AMQSRLATL 9 Unmodified _AMQSRLATL_ 0 0 0 nc|ENSG00000115561|Q9Y3E7-2|CHMP3;nc|ENSG00000115561|Q9Y3E7-4|CHMP3;ENSG00000115561|ENST00000263856|CHMP3;nc|ENSG00000115561|Q9Y3E7-3|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 nc|ENSG00000115561|Q9Y3E7-2|CHMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7756958007812 2 495.773677 989.5328 0.65712 0.00032578 0.39401 0.00019534 1.0511 0.00052112 495.77392511346727 44.397 0.29193 39.545 39.356 39.648 -4.852 33 21 2 0 0 0 0.018061 1 27131 27131 65.474 27.5 1 15554000 1774 3138 1244 1267 1972 1972 0.037615164284147795 AMRAMLEVECK 11 Unmodified _AMRAMLEVECK_ 0 0 0 REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220 REV__nc|ENSG00000134313|Q9ULH0-3|KIDINS220 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5455932617188 3 427.543504 1279.60868 -0.060912 -2.6042E-05 2.6068 0.0011145 2.5459 0.0010885 427.54332923414984 37.427 0.3489 37.448 37.153 37.502 0.021545 26 15 3 0 0 0 0.67477 1 19870 19870 6.6235 2.5068 1 2807500 + 1775 19974 1245 1268 1973 1973 -0.01993590777965437 AMSRDHATTL 10 Unmodified _AMSRDHATTL_ 0 0 0 AluSz_dup93949|chr19:17813592-17813897:-|2.4182355203930364|0.3588066818941023|2.75|178.0|13|3|sense AluSz_dup93949|chr19:17813592-17813897:-|2.4182355203930364|0.3588066818941023|2.75|178.0|13|3|sense AluSz_dup93949|chr19:17813592-17813897:-|2.4182355203930364|0.3588066818941023|2.75|178.0|13|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7701416015625 2 551.769123 1101.52369 0.3615 0.00019946 0.92104 0.0005082 1.2825 0.00070766 551.7695986792927 48.511 0.413 48.467 48.281 48.694 -0.04369 50 20 3 0 0 0 0.54684 1 26222 26222 13.906 2.2658 1 31876000 1776 27 1246 1269 1974 1974 -0.023008769279385888 AMSSRPVWVEY 11 Unmodified _AMSSRPVWVEY_ 0 0 0 REV__ENST00000441493.6_1_22:18385495-18387514:-|nuORF REV__ENST00000441493.6_1_22:18385495-18387514:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.32373046875 2 662.821355 1323.62816 0.64317 0.00042631 2.8829 0.0019108 3.526 0.0023371 662.8227935627566 63.57 0.20045 57.394 57.306 57.506 -6.1757 18 10 3 0 0 0 0.29175 1 41133 41133 27.223 2.2323 1 39043000 + 1777 27091 1247 1270 1975 1975 -0.020711751712269688 AMTRKVLEVHE 11 Unmodified _AMTRKVLEVHE_ 0 0 0 REV__ENSG00000124733|ENST00000244711|MEA1 REV__ENSG00000124733|ENST00000244711|MEA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.8561401367188 2 656.855729 1311.69691 1.0512 0.00069052 -0.83127 -0.00054602 0.21998 0.0001445 656.8552233788783 100.76 0.095024 94.589 94.528 94.623 -6.1757 16 6 3 0 0 0 0.18636 1 67470 67470 32.786 5.5625 1 35159000 + 1778 19465 1248 1271 1976 1976 0.05352489128495108 AMWEHPITA 9 Oxidation (M) _AM(Oxidation (M))WEHPITA_ AM(1)WEHPITA AM(42)WEHPITA 0 0 1 nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC nc|ENSG00000138621|Q96CD2-2|PPCDC nc|ENSG00000138621|Q96CD2-2|PPCDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2500610351562 2 536.250034 1070.48552 0.64453 0.00034563 0.71008 0.00038078 1.3546 0.00072641 536.2504853021136 42.255 0.54516 37.571 37.234 37.779 -4.6846 59 34 2 0 0 0 0.06294 1 25521 25521 41.84 27.001 1 21774000 1779 5071 1249 1272 1977 1977 928 -0.04690762842596996 AMYGTKLETI 10 Oxidation (M) _AM(Oxidation (M))YGTKLETI_ AM(1)YGTKLETI AM(44)YGTKLETI 0 0 1 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-5|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7920532226562 2 571.791732 1141.56891 0.32731 0.00018715 -0.017907 -1.0239E-05 0.3094 0.00017691 571.7910487930861 39.947 0.35249 39.947 39.758 40.11 0 31 17 3 0 0 0 0.11824 1 21402 21402 43.772 24.515 1 2094200 1780 5814 1250 1273 1978 1978 1047 0.003789288145981118 AMYKGKKTS 9 Unmodified _AMYKGKKTS_ 0 0 0 REV__ENSG00000050030|ENST00000055682|NEXMIF REV__ENSG00000050030|ENST00000055682|NEXMIF MSMS AL20221201_MKP_PDAC_01 4 507.2458801269531 2 507.276052 1012.53755 NaN NaN NaN NaN NaN NaN NaN 93.123 1 86.947 86.447 87.447 -6.1757 0 0 0 0.6306 1 61621 61621 11.64 1.4569 1 + 1781 17256 1251 1274 1979 1979 0.03178400571152906 ANAAPYKS 8 Unmodified _ANAAPYKS_ 0 0 0 REV__ENST00000497384.1_1_1:24696162-24710359:-|nuORF REV__ENST00000497384.1_1_1:24696162-24710359:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.41455078125 1 821.415194 820.407917 0.06378 5.239E-05 0.59525 0.00048895 0.65903 0.00054134 821.4157513964774 31.367 0.30838 31.367 31.174 31.482 0 30 14 3 0 0 0 0.61462 1 16267 16267 24.674 0 1 3872400 + 1782 16927 1252 1275 1980 1980 -0.009470327164763148 ANAHLMAQIGR 11 Unmodified _ANAHLMAQIGR_ 0 0 0 ENSG00000178473|ENST00000380433|UCN3 ENSG00000178473|ENST00000380433|UCN3 ENSG00000178473|ENST00000380433|UCN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5445556640625 3 394.545113 1180.61351 NaN NaN NaN NaN NaN NaN NaN 22.17 1 22.184 21.684 22.684 0.013796 0 0 0 0.94184 1 11380 11380 0.40827 0.24894 1 1783 8755 1253 1276 1981 1981 0.030427974712893047 ANAHSSSEPS 10 Unmodified _ANAHSSSEPS_ 0 0 0 REV__nc|ENSG00000145901|Q15025-7|TNIP1 REV__nc|ENSG00000145901|Q15025-7|TNIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7116088867188 2 493.712328 985.410102 -0.1442 -7.1193E-05 -0.82347 -0.00040656 -0.96767 -0.00047775 493.71168867104427 52.221 0.38018 52.221 51.996 52.376 0 44 16 3 0 0 0 0.67033 1 28835 28835 6.2058 0.47393 1 16193000 + 1784 20799 1254 1277 1982 1982 -0.08318648769318315 ANAKFYETK 9 Unmodified _ANAKFYETK_ 0 0 0 nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16 nc|ENSG00000138617|Q8N5Y8-3|PARP16 nc|ENSG00000138617|Q8N5Y8-3|PARP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2769775390625 2 536.277106 1070.53966 1.1634 0.00062388 -0.88646 -0.00047539 0.2769 0.00014849 536.2766448118126 46.51 0.24846 46.477 46.369 46.617 -0.033417 17 11 2 0 0 0 0.49272 1 25056 25056 7.9102 1.187 1 1874600 1785 5070 1255 1278 1983 1983 0.007211525806042118 ANARFGGF 8 Unmodified _ANARFGGF_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MSMS AL20221201_MKP_PDAC_01 4 420.2410888671875 2 420.211569 838.408586 NaN NaN NaN NaN NaN NaN NaN 35.829 1 31.636 31.136 32.136 -4.1928 0 0 0 0.95201 1 20848 20848 10.183 3.8293 1 1786 646 1256 1279 1984 1984 -0.017081932767496255 ANDEDCMCSCC 11 Unmodified _ANDEDCMCSCC_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3392333984375 2 597.155444 1192.29634 NaN NaN NaN NaN NaN NaN NaN 16.856 1 16.861 16.361 17.361 0.0050564 0 0 0 0.9435 1 8471 8471 0 0 1 + 1787 22659 1257 1280 1985 1985 -0.292120305763774 ANDGFVRL 8 Unmodified _ANDGFVRL_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.23779296875 2 446.237784 890.461016 0.89865 0.00040101 -0.51901 -0.0002316 0.37964 0.00016941 446.2375354143591 46.36 0.37981 46.36 46.164 46.544 0 38 17 3 0 0 0 0.27285 1 25307 25307 58.679 12.658 1 9351300 1788 7918;3981;7827 1258 1281 1986 1986 0.011403450661759962 ANDGFVRL 8 Unmodified _ANDGFVRL_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENST00000519455.5_1_5:179047887-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MSMS AL20221201_MKP_PDAC_01 4 446.23876953125 2 446.237784 890.461016 NaN NaN NaN NaN NaN NaN NaN 51.661 1 46.012 45.512 46.512 -5.649 0 0 0 0.39735 1 32527 32527 54.774 3.9185 1 1789 7918;3981;7827 1258 1281 1987 1987 0.011403450661759962 ANDGYELRVAL 11 Unmodified _ANDGYELRVAL_ 0 0 0 REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5463256835938 3 407.547177 1219.6197 -0.56476 -0.00023017 -0.58019 -0.00023646 -1.145 -0.00046662 407.5469922243703 18.847 0.35698 18.847 18.703 19.06 0 78 29 3 0 0 0 0.65846 2 9441 9343;9441 6.6235 2.7471 1 9221400 + 1790 17785 1259 1282 1988;1989 1989 0.018675941838182553 ANDGYELRVAL 11 Unmodified _ANDGYELRVAL_ 0 0 0 REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5474548339844 3 407.547177 1219.6197 1.2825 0.0005227 -0.82537 -0.00033638 0.45718 0.00018632 407.546858975977 20.626 0.92709 17.933 17.544 18.471 -2.693 155 55 4 0 0 0 0.5229 2 11018 10813;11018 8.7518 1.1522 1 33296000 + 1791 17785 1259 1282 1990;1991 1991 0.018675941838182553 ANDGYELRVAL 11 Unmodified _ANDGYELRVAL_ 0 0 0 REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.547177 1219.6197 -0.56476 -0.00023017 -0.58019 -0.00023646 -1.145 -0.00046662 407.5469922243703 18.847 0.35698 18.847 18.703 19.06 0 0.17482 3.7505E-05 NaN 4.1166 78 29 3 NaN NaN NaN NaN 0 NaN NaN 0 9221400 + 1792 17785 1259 1282 0.018675941838182553 ANDGYELRVAL 11 Unmodified _ANDGYELRVAL_ 0 0 0 REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF REV__ENST00000507713.1_1_5:94775848-94776172:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 407.547177 1219.6197 1.3141 0.00053555 -1.4207 -0.000579 -0.10661 -4.345E-05 407.5466464616603 21.191 0.074705 18.498 18.471 18.546 -2.693 -0.17482 -0.00099013 NaN 4.1166 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1799600 + 1793 17785 1259 1282 0.018675941838182553 ANDSSFVLF 9 Unmodified _ANDSSFVLF_ 0 0 0 ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.4797973632812 1 999.478188 998.470912 -0.16117 -0.00016108 3.972 0.00397 3.8109 0.0038089 999.4797792711887 65.449 0.32467 65.449 65.272 65.597 0 18 12 2 0 0 0 0.10734 1 36513 36513 32.305 2.0807 1 1375900 1794 757 1260 1283 1992 1992 -0.02838511719073722 ANDWKTNAAGF 11 Unmodified _ANDWKTNAAGF_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.781005859375 2 597.780544 1193.54654 0.26769 0.00016002 0.1193 7.1317E-05 0.38699 0.00023134 597.7805506537794 36.907 0.36455 36.907 36.732 37.097 0 38 17 3 0 0 0 0.24216 1 19632 19632 29.841 8.0939 1 2624200 1795 1684 1261 1284 1993 1993 -0.04249534538826083 ANEPQSEQ 8 Unmodified _ANEPQSEQ_ 0 0 0 REV__SDE2|p.G376E|1|0.1|ENSG00000143751|chr1:225987903-225987903|C/T|missense_variant REV__SDE2|p.G376E|1|0.1|ENSG00000143751|chr1:225987903-225987903|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.3889770507812 1 902.385016 901.377739 -0.13068 -0.00011792 4.3432 0.0039192 4.2125 0.0038013 902.3888172640327 70.329 0.17446 70.329 70.227 70.402 0 9 6 2 0 0 0 0.79887 1 39186 39186 7.2892 1.0834 1 287880 + 1796 30097 1262 1285 1994 1994 -0.07689436172324804 ANERMWLE 8 Unmodified _ANERMWLE_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7449340820312 2 524.747659 1047.48076 NaN NaN NaN NaN NaN NaN NaN 16.53 1 16.53 16.03 17.03 0 0 0 0 0.95254 1 8068 8068 10.074 1.3285 1 + 1797 23464 1263 1286 1995 1995 -0.041076469853805975 ANETWVKFPEA 11 Unmodified _ANETWVKFPEA_ 0 0 0 REV__ENST00000474221.5_1_11:293333-294746:+|nuORF REV__ENST00000474221.5_1_11:293333-294746:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.31787109375 2 646.319502 1290.62445 NaN NaN NaN NaN NaN NaN NaN 86.959 1 86.959 86.459 87.459 0 0 0 0 0.93969 1 48159 48159 2.7352 0 1 + 1798 20561 1264 1287 1996 1996 -0.009235216734168716 ANFDSEEDTGF 11 Unmodified _ANFDSEEDTGF_ 0 0 0 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.24169921875 2 616.241115 1230.46768 0.55585 0.00034254 -0.58387 -0.0003598 -0.028021 -1.7267E-05 616.2410922720851 54.932 0.45914 54.932 54.689 55.149 0 68 19 5 0 0 0 0.65108 1 30558 30558 8.7454 2.0222 1 61725000 1799 16140 1265 1288 1997 1997 -0.13833851354434046 ANFDSEEDTGF 11 Unmodified _ANFDSEEDTGF_ 0 0 0 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 nc|ENSG00000115841|Q96LZ7-2|RMDN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2418823242188 2 616.241115 1230.46768 0.54229 0.00033418 0.25995 0.00016019 0.80224 0.00049437 616.241499457374 55.582 0.33572 55.104 54.964 55.3 -0.47798 50 15 4 0 0 0 0.6889 1 30132 30132 5.2969 0.96765 1 10238000 1800 16140 1265 1288 1998 1998 -0.13833851354434046 ANFEDYGVAL 10 Unmodified _ANFEDYGVAL_ 0 0 0 REV__nc|ENSG00000137801|P07996-2|THBS1 REV__nc|ENSG00000137801|P07996-2|THBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2537841796875 2 549.758746 1097.50294 0.083762 4.6049E-05 -1.0251 -0.00056354 -0.94131 -0.00051749 549.7587345360687 56.382 0.47876 56.382 56.227 56.705 0 50 21 3 0 0 0 0.52888 1 31529 31529 14.838 2.3067 1 16128000 + + 1801 16865 1266 1289 1999 1999 -0.041911440359626795 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8168334960938 2 645.81693 1289.61931 0.24535 0.00015845 -0.62221 -0.00040184 -0.37687 -0.00024339 645.8167091515259 74.216 0.30276 74.216 74.062 74.365 0 28 14 2 0 0 0 0.67459 2 41254 41254;41354 5.7319 2.4505 1 1045000 1802 2208 1267 1290 2000;2001 2000 -0.013917807453935893 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.816650390625 2 645.81693 1289.61931 -0.031569 -2.0388E-05 -0.45276 -0.0002924 -0.48433 -0.00031279 645.8165633769635 79.203 0.39703 79.203 78.997 79.394 0 45 17 4 0 0 0 0.48505 2 44050 43945;44050 17.113 6.0349 1 5547600 1803 2208 1267 1290 2002;2003 2003 -0.013917807453935893 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8167114257812 2 645.81693 1289.61931 -0.030928 -1.9974E-05 -0.028263 -1.8253E-05 -0.059191 -3.8227E-05 645.8168375267128 82.622 0.37706 82.622 82.434 82.811 0 46 15 4 0 0 0 0.48505 2 45781 45781;45883 17.113 4.0704 1 6024700 1804 2208 1267 1290 2004;2005 2004 -0.013917807453935893 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.81689453125 2 645.81693 1289.61931 -0.030168 -1.9483E-05 -0.63038 -0.00040711 -0.66054 -0.00042659 645.8164643359346 86.697 0.49627 86.697 86.494 86.99 0 79 26 5 0 0 0 0.48505 1 47954 47954 17.113 7.039 1 17761000 1805 2208 1267 1290 2006 2006 -0.013917807453935893 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.816650390625 2 645.81693 1289.61931 -0.028225 -1.8228E-05 2.5143 0.0016238 2.4861 0.0016055 645.8163363784058 96.897 0.2782 96.897 96.717 96.995 0 50 15 5 0 0 0 0.67459 1 53596 53596 5.7319 2.1354 1 1218200 1806 2208 1267 1290 2007 2007 -0.013917807453935893 ANFLSRSFYW 10 Unmodified _ANFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.817626953125 2 645.81693 1289.61931 0.33034 0.00021334 -0.079039 -5.1045E-05 0.2513 0.0001623 646.3177515470592 87.252 0.18047 86.747 86.631 86.812 -0.50423 11 6 2 0 0 0 0.67459 1 47728 47728 5.7319 0 1 346080 1807 2208 1267 1290 2008 2008 -0.013917807453935893 ANFWQACSPA 10 Unmodified _ANFWQACSPA_ 0 0 0 ENST00000424426.1_1_6:49518753-49519616:+|nuORF ENST00000424426.1_1_6:49518753-49519616:+|nuORF ENST00000424426.1_1_6:49518753-49519616:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7412109375 2 547.739834 1093.46511 1.2398 0.00067907 1.046 0.00057293 2.2858 0.001252 547.7403393582167 90.642 0.58653 84.466 84.236 84.823 -6.1757 75 34 3 0 0 0 0.42068 1 59800 59800 20.454 8.213 1 17428000 1808 13149 1268 1291 2009 2009 -0.0778793350241358 ANFWQACSPA 10 Unmodified _ANFWQACSPA_ 0 0 0 ENST00000424426.1_1_6:49518753-49519616:+|nuORF ENST00000424426.1_1_6:49518753-49519616:+|nuORF ENST00000424426.1_1_6:49518753-49519616:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.739834 1093.46511 0.40614 0.00022246 0.32835 0.00017985 0.7345 0.00040231 547.7402526894263 84.986 0.16686 84.484 84.388 84.555 -0.5015 0.0088668 -0.00072003 NaN 20.454 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 384220 1809 13149 1268 1291 -0.0778793350241358 ANGINKLLDA 10 Unmodified _ANGINKLLDA_ 0 0 0 nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000137968|Q8NCS7-5|SLC44A5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.815185546875 2 514.790381 1027.56621 1.1755 0.00060514 0.095359 4.909E-05 1.2709 0.00065423 514.7908492490982 54.348 0.079071 48.483 48.437 48.516 -5.8653 6 4 2 0 0 0 0.21783 1 34448 34448 18.146 2.2992 1 5099500 1810 4996 1269 1292 2010 2010 0.05352841471949432 ANICEDIICH 10 Unmodified _ANICEDIICH_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7543334960938 2 565.752084 1129.48961 0.30254 0.00017116 3.3563 0.0018988 3.6588 0.00207 565.7537366350955 85.846 0.22813 85.846 85.723 85.952 0 15 9 2 0 0 0 0.69917 1 47583 47583 2.9952 1.5133 1 362090 1811 5400 1270 1293 2011 2011 -0.0699504141118723 ANINMQDAY 9 Unmodified _ANINMQDAY_ 0 0 0 ENSG00000164512|ENST00000341048|ANKRD55 ENSG00000164512|ENST00000341048|ANKRD55 ENSG00000164512|ENST00000341048|ANKRD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2288818359375 2 520.229299 1038.44404 0.37336 0.00019423 -1.444 -0.00075123 -1.0707 -0.000557 520.2283190844861 82.427 0.31534 82.427 82.245 82.56 0 29 12 3 0 0 0 0.38785 1 45716 45716 13.042 2.9685 1 1234700 1812 7202 1271 1294 2012 2012 -0.07363943601922074 ANLEQNERQC 10 Unmodified _ANLEQNERQC_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7730102539062 2 602.772394 1203.53023 -0.09389 -5.6594E-05 0.48727 0.00029371 0.39338 0.00023712 602.7729479006197 77.758 0.27966 77.758 77.62 77.9 0 38 13 4 0 0 0 0.67459 1 43203 43203 5.7319 0.50118 1 3018300 + 1813 19900 1272 1295 2013 2013 -0.06338983767227546 ANLIGEVID 9 Unmodified _ANLIGEVID_ 0 0 0 REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.5090942382812 1 943.509488 942.502212 0.031082 2.9326E-05 -0.48237 -0.00045512 -0.45129 -0.00042579 943.5088279861408 66.96 0.24655 66.96 66.839 67.085 0 15 11 2 0 0 0 0.32871 1 37323 37323 15.847 0 1 1220400 + 1814 22513 1273 1296 2014 2014 0.028660613149895653 ANLPDFELL 9 Unmodified _ANLPDFELL_ 0 0 0 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.27490234375 2 516.274032 1030.53351 0.18395 9.4969E-05 1.3081 0.00067534 1.4921 0.00077031 516.2743643450175 72.114 0.3544 72.114 71.904 72.258 0 24 16 2 0 0 0 0.32871 1 40132 40132 15.847 4.2069 1 1365700 1815 4253 1274 1297 2015 2015 0.01946634349087617 ANMEPVQGE 9 Unmodified _ANMEPVQGE_ 0 0 0 nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10 nc|ENSG00000243667|Q96MX6-2|DNAAF10 nc|ENSG00000243667|Q96MX6-2|DNAAF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.715087890625 2 487.716024 973.417496 0.77311 0.00037706 -0.47475 -0.00023154 0.29836 0.00014551 487.715798362883 42.994 0.35509 38.309 38.089 38.444 -4.6846 38 22 2 0 0 0 0.08691 2 25977 25977;26118 36.127 5.4905 1 15185000 1816 10711 1275 1298 2016;2017 2016 -0.07027632493259262 ANMNPQPVW 9 Unmodified _ANMNPQPVW_ 0 0 0 REV__ENSG00000254585|ENST00000650528|MAGEL2 REV__ENSG00000254585|ENST00000650528|MAGEL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7520751953125 2 528.750201 1055.48585 0.47195 0.00024955 -1.2039 -0.00063658 -0.73199 -0.00038704 528.7498360076664 82.899 0.38008 82.401 82.203 82.583 -0.49751 24 16 2 0 0 0 0.49272 1 45331 45331 7.9102 2.1497 1 485770 + 1817 24524 1276 1299 2018 2018 -0.03967343122758393 ANNRNYLTII 10 Unmodified _ANNRNYLTII_ 0 0 0 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.8877258300781 3 397.887533 1190.64077 0.30973 0.00012324 0.16952 6.7449E-05 0.47925 0.00019069 397.8875267895374 58.832 0.30017 58.341 58.173 58.474 -0.49079 35 14 3 0 0 0 0.51153 2 31961 31961;32059 15.739 0.78146 1 11103000 + 1818 19570 1277 1300 2019;2020 2019 0.053076042833026804 ANNRNYLTII 10 Unmodified _ANNRNYLTII_ 0 0 0 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 397.887533 1190.64077 0.30973 0.00012324 0.16952 6.7449E-05 0.47925 0.00019069 397.8875267895374 58.832 0.30017 58.341 58.173 58.474 -0.49079 -0.028602 9.3662E-05 NaN 15.739 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11103000 + 1819 19570 1277 1300 0.053076042833026804 ANNYNQDDY 9 Unmodified _ANNYNQDDY_ 0 0 0 REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7997436523438 2 558.715067 1115.41558 NaN NaN NaN NaN NaN NaN NaN 62.529 1 62.529 62.029 63.029 0 0 0 0 0.82396 1 34878 34878 4.756 0 1 + 1820 20537 1278 1301 2021 2021 -0.13750969977513705 ANPDLSAVL 9 Unmodified _ANPDLSAVL_ 0 0 0 ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.4840698242188 1 899.483273 898.475997 0.32176 0.00028942 0.1526 0.00013726 0.47436 0.00042668 899.4834695066345 60.851 0.27998 60.851 60.695 60.975 0 28 11 3 0 0 0 0.047196 2 33883 33883;33987 46.021 7.4881 1 3426700 1821 13189 1279 1302 2022;2023 2022 0.022697921435337776 ANPDLSAVL 9 Unmodified _ANPDLSAVL_ 0 0 0 ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2454223632812 2 450.245275 898.475997 0.66338 0.00029868 -0.060314 -2.7156E-05 0.60307 0.00027153 450.24522758970033 60.851 0.35394 60.851 60.67 61.024 0 32 14 3 0 0 0 0.28023 1 33890 33890 18.146 3.3081 1 3536600 1822 13189 1279 1302 2024 2024 0.022697921435337776 ANPIDSMLC 9 Unmodified _ANPIDSMLC_ 0 0 0 nc|ENSG00000155893|Q8TE99-2|PXYLP1;ENSG00000155893|ENST00000286353|PXYLP1 nc|ENSG00000155893|Q8TE99-2|PXYLP1 nc|ENSG00000155893|Q8TE99-2|PXYLP1 MSMS AL20221201_MKP_PDAC_01 4 482.2171325683594 2 482.217346 962.420138 NaN NaN NaN NaN NaN NaN NaN 22.781 1 20.003 19.503 20.503 -2.7784 0 0 0 0.50124 1 12278 12278 15.847 1.2655 1 1823 6415 1280 1303 2025 2025 -0.06257500359959067 ANPVTTKF 8 Unmodified _ANPVTTKF_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.26171875 2 439.242535 876.470518 0.6248 0.00027444 -0.57537 -0.00025273 0.049433 2.1713E-05 439.24240419342937 57.242 0.30201 57.242 57.022 57.324 0 22 13 2 0 0 0 0.64853 1 31780 31780 21.747 3.6117 1 1676800 + 1824 19508 1281 1304 2026 2026 0.02734113351709766 ANQELLVWY 9 Unmodified _ANQELLVWY_ 0 0 0 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1;ENST00000481163.1_1_6:106546960-106547465:+|nuORF nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.756591796875 2 568.292756 1134.57096 0.68029 0.0003866 -0.3997 -0.00022714 0.28059 0.00015946 568.2920399612932 57.365 0.18661 57.365 57.281 57.467 0 10 7 2 0 0 0 0.17666 1 31961 31961 19.439 3.5918 1 1471100 1825 794 1282 1305 2027 2027 0.009057256147116277 ANQMYDGEQ 9 Unmodified _ANQMYDGEQ_ 0 0 0 ENST00000281513.9_1_2:15326920-15326989:-|nuORF ENST00000281513.9_1_2:15326920-15326989:-|nuORF ENST00000281513.9_1_2:15326920-15326989:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.4766540527344 3 352.474801 1054.40257 NaN NaN NaN NaN NaN NaN NaN 90.639 1 84.463 83.963 84.963 -6.1757 0 0 0 0.56093 1 59880 59880 9.544 2.8208 1 1826 11415 1283 1306 2028 2028 -0.1224512436126588 ANRQWKDDIH 10 Unmodified _ANRQWKDDIH_ 0 0 0 ENST00000473656.5_1_10:102747323-102749434:+|nuORF;ENST00000311916.6_2_10:102749052-102749434:+|nuORF ENST00000473656.5_1_10:102747323-102749434:+|nuORF ENST00000473656.5_1_10:102747323-102749434:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2140197753906 3 428.214421 1281.62143 -0.26553 -0.0001137 0.33947 0.00014537 0.073942 3.1663E-05 428.21434701576504 23.116 0.18663 23.116 23.036 23.222 0 14 9 2 0 0 0 0.72044 1 11775 11775 0.62683 0.063655 1 275250 1827 11699 1284 1307 2029 2029 -0.008113520075767156 ANSAISYQI 9 Unmodified _ANSAISYQI_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7490539550781 2 483.748182 965.481811 0.037252 1.8021E-05 3.4619 0.0016747 3.4991 0.0016927 483.7494296578118 48.311 0.44063 48.311 48.051 48.491 0 28 21 2 0 0 0 0.19127 1 26494 26494 24.021 2.2739 1 51581000 1828 385 1285 1308 2030 2030 -0.002311093448156498 ANSDTMACEY 10 Unmodified _ANSDTMACEY_ 0 0 0 ENST00000548916.1_1_12:54903742-54905890:+|nuORF;nc|ENSG00000123338|P55160-2|NCKAP1L;ENSG00000123338|ENST00000293373|NCKAP1L ENST00000548916.1_1_12:54903742-54905890:+|nuORF ENST00000548916.1_1_12:54903742-54905890:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.260009765625 2 552.702257 1103.38996 1.0484 0.00057944 -1.9057 -0.0010533 -0.85735 -0.00047386 552.7012305123965 42.736 0.28956 38.052 37.952 38.241 -4.6846 28 18 2 0 0 0 0.23325 1 25848 25848 10.074 6.1295 1 9673100 1829 3697 1286 1309 2031 2031 -0.15759903815819598 ANSLFLEVDHF 11 Unmodified _ANSLFLEVDHF_ 0 0 0 nc|ENSG00000139973|Q17RD7-4|SYT16;nc|ENSG00000139973|Q17RD7-2|SYT16;ENSG00000139973|ENST00000683842|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3201293945312 2 646.319502 1290.62445 NaN NaN NaN NaN NaN NaN NaN 84.955 1 84.955 84.455 85.455 0 0 0 0 0.94201 1 47087 47087 1.0715 0.61312 1 1830 5201 1287 1310 2032 2032 -0.009235216734623464 ANSNEEIQGAF 11 Unmodified _ANSNEEIQGAF_ 0 0 0 REV__ENSG00000134760|ENST00000257192|DSG1 REV__ENSG00000134760|ENST00000257192|DSG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8463439941406 3 393.847403 1178.52038 0.24028 9.4634E-05 -0.047913 -1.8871E-05 0.19237 7.5763E-05 394.1818478062967 68.904 0.24515 68.423 68.309 68.554 -0.48071 25 10 3 0 0 0 0.71341 1 37705 37705 1.2148 0 1 829730 + 1831 20007 1288 1311 2033 2033 -0.06173848500952772 ANSNSSCMEL 10 Unmodified _ANSNSSCMEL_ 0 0 0 nc|ENSG00000141127|O60256-3|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2 nc|ENSG00000141127|O60256-3|PRPSAP2 nc|ENSG00000141127|O60256-3|PRPSAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7520751953125 2 528.210249 1054.40594 0.45963 0.00024278 0.7249 0.0003829 1.1845 0.00062568 528.2105522670812 82.911 0.42811 82.413 82.244 82.672 -0.49751 46 17 3 0 0 0 0.23693 1 45331 45331 6.2058 6.2058 1 6253800 1832 5302 1289 1312 2034 2034 -0.11908197578918589 ANSSPCASIL 10 Unmodified _ANSSPCASIL_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7348327636719 2 481.734217 961.453881 0.26918 0.00012967 1.0676 0.00051431 1.3368 0.00064399 481.7346473889792 75.802 0.23908 75.802 75.697 75.936 0 13 10 2 0 0 0 0.6966 1 42171 42171 3.2813 0.39209 1 536500 + 1833 29521 1290 1313 2035 2035 -0.028387555965537103 ANTFYDQP 8 Unmodified _ANTFYDQP_ 0 0 0 REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1 REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.4177856445312 1 955.415588 954.408311 -0.19046 -0.00018197 -1.515 -0.0014475 -1.7055 -0.0016294 955.4157238112653 31.21 0.18544 31.21 31.132 31.318 0 11 8 2 0 0 0 0.80311 1 16280 16280 4.756 0 1 451170 + 1834 29513 1291 1314 2036 2036 -0.07071657787287222 ANTILFFRLD 10 Unmodified _ANTILFFRLD_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;ENST00000528042.1_1_11:57505416-57505545:+|nuORF;ENST00000525035.5_1_11:57505416-57506194:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2243957519531 3 403.892396 1208.65536 -0.53408 -0.00021571 -1.7465 -0.0007054 -2.2806 -0.00092111 403.89134732404403 17.214 0.081724 17.228 17.185 17.267 0.013865 45 29 2 0 0 0 0.71981 1 8533 8533 0.69767 0.69767 1 544090 1835 10445 1292 1315 2037 2037 0.059376764314720276 ANVLLDYEF 9 Unmodified _ANVLLDYEF_ 0 0 0 REV__nc|ENSG00000273540|Q96MI9|AGBL1 REV__nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.27685546875 2 542.27149 1082.52843 0.46707 0.00025328 0.96006 0.00052062 1.4271 0.0007739 542.2722642048038 82.038 0.55253 81.543 81.342 81.895 -0.4952 40 20 3 0 0 0 0.41742 1 45069 45069 11.64 2.2929 1 2010100 + 1836 24635 1293 1316 2038 2038 -0.009536695135238915 ANVYTTRFN 9 Unmodified _ANVYTTRFN_ 0 0 0 REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7880249023438 2 543.272355 1084.53016 0.13955 7.5812E-05 -0.89364 -0.00048549 -0.75409 -0.00040968 543.772898751696 40.07 0.080528 40.07 40.03 40.11 0 6 3 2 0 0 0 0.19496 1 21509 21509 13.906 3.1065 1 983930 + 1837 17285 1294 1317 2039 2039 -0.008726157049068206 ANYGQKDRIGP 11 Unmodified _ANYGQKDRIGP_ 0 0 0 REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.8786926269531 3 406.879038 1217.61528 NaN NaN NaN NaN NaN NaN NaN 12.294 1 9.8119 9.3119 10.312 -2.482 0 0 0 0.94148 1 6211 6211 1.4551 0.75745 1 + 1838 24260 1295 1318 2040 2040 0.01518129760870579 ANYQETGEYL 10 Unmodified _ANYQETGEYL_ 0 0 0 REV__nc|ENSG00000127463|Q8N766-4|EMC1 REV__nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7594604492188 2 594.264393 1186.51423 -0.47736 -0.00028368 0.24486 0.00014551 -0.2325 -0.00013816 594.2642552241732 25.805 0.22957 25.805 25.674 25.904 0 24 10 3 0 0 0 0.23489 1 13222 13222 8.7454 0 1 2386300 + 1839 19582 1296 1319 2041 2041 -0.07156366732465358 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1805419921875 2 394.181423 786.348294 -0.516 -0.0002034 0.32106 0.00012656 -0.19494 -7.6842E-05 394.18161232621134 19.491 0.24115 19.491 19.387 19.628 0 58 29 3 0 0 0 0.80624 1 9732 9732 2.8892 2.8892 1 2014400 + 1840 25097 1297 1320 2042 2042 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1814575195312 2 394.181423 786.348294 -0.50271 -0.00019816 0.96993 0.00038233 0.46722 0.00018417 394.18195861143977 19.815 0.24588 19.815 19.663 19.909 0 37 29 2 0 0 0 0.80624 1 9913 9913 2.8892 2.8892 1 1366200 + 1841 25097 1297 1320 2043 2043 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1817016601562 2 394.181423 786.348294 -0.47854 -0.00018863 0.08044 3.1708E-05 -0.3981 -0.00015692 394.18158890989287 19.377 0.27718 19.4 19.305 19.582 0.023106 67 28 4 0 0 0 0.80624 1 9740 9740 2.8892 2.0956 1 4874200 + 1842 25097 1297 1320 2044 2044 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.182373046875 2 394.181423 786.348294 -0.023102 -9.1064E-06 0.5433 0.00021416 0.52019 0.00020505 394.1819604390464 19.717 0.17161 19.724 19.65 19.822 0.0078487 14 7 3 0 0 0 0.80975 1 10047 10047 0.79363 0.79363 1 421730 + 1843 25097 1297 1320 2045 2045 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.1803283691406 2 394.181423 786.348294 0.80305 0.00031655 -0.7889 -0.00031097 0.014157 5.5805E-06 394.1811155093812 33.07 0.4034 29.214 29.01 29.413 -3.8562 46 25 2 0 0 0 0.80044 1 18891 18891 6.3541 6.3541 1 54067000 + 1844 25097 1297 1320 2046 2046 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.181423 786.348294 -0.516 -0.0002034 0.32106 0.00012656 -0.19494 -7.6842E-05 394.18161232621134 19.491 0.24115 19.491 19.387 19.628 0 0.048794 -2.013E-05 NaN 2.8892 58 29 3 NaN NaN NaN NaN 0 NaN NaN 0 2014400 + 1845 25097 1297 1320 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.181423 786.348294 -0.50271 -0.00019816 0.96993 0.00038233 0.46722 0.00018417 394.18195861143977 19.815 0.24588 19.815 19.663 19.909 0 0.062392 0.00033714 NaN 2.8892 37 29 2 NaN NaN NaN NaN 0 NaN NaN 0 1366200 + 1846 25097 1297 1320 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.181423 786.348294 0.65367 0.00025767 -0.90468 -0.00035661 -0.25101 -9.8943E-05 394.18099184475176 29.431 0.24366 29.35 29.258 29.501 -0.080431 0.068126 -4.9861E-05 NaN 6.3541 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 39967000 + 1847 25097 1297 1320 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.181423 786.348294 -0.47854 -0.00018863 0.08044 3.1708E-05 -0.3981 -0.00015692 394.18158890989287 19.377 0.27718 19.4 19.305 19.582 0.023106 -0.042464 -0.00020982 NaN 2.8892 67 28 4 NaN NaN NaN NaN 0 NaN NaN 0 4874200 + 1848 25097 1297 1320 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 394.181423 786.348294 -0.023102 -9.1064E-06 0.5433 0.00021416 0.52019 0.00020505 394.1819604390464 19.717 0.17161 19.724 19.65 19.822 0.0078487 -0.028219 7.9802E-07 NaN 2.8892 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 421730 + 1849 25097 1297 1320 -0.05342626931508221 APAAACFH 8 Unmodified _APAAACFH_ 0 0 0 REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF REV__ENST00000265838.8_1_11:107992304-108002640:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 394.181423 786.348294 0.80305 0.00031655 -0.7889 -0.00031097 0.014157 5.5805E-06 394.1811155093812 33.07 0.4034 29.214 29.01 29.413 -3.8562 -0.068126 4.1421E-05 NaN 6.3541 46 25 2 NaN NaN NaN NaN 0 NaN NaN 0 54067000 + 1850 25097 1297 1320 -0.05342626931508221 APAAGDTIISL 11 Unmodified _APAAGDTIISL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;ENST00000555014.1_1_14:62203625-62207292:+|nuORF ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7849731445312 2 514.784764 1027.55498 0.39004 0.00020079 0.5288 0.00027222 0.91884 0.000473 514.7848460924431 68.002 0.39607 68.002 67.788 68.184 0 49 19 3 0 0 0 0.0097967 2 37865 37865;37965 68.081 22.381 1 4672100 1851 1860 1298 1321 2047;2048 2047 0.04230019377814642 APAAGDTIISL 11 Unmodified _APAAGDTIISL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A;ENST00000555014.1_1_14:62203625-62207292:+|nuORF ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.784764 1027.55498 0.37718 0.00019417 0.44481 0.00022898 0.82199 0.00042315 514.7847368166314 68.5 0.20347 68.019 67.85 68.053 -0.48071 0.008813 -6.153E-05 NaN 68.081 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 948000 1852 1860 1298 1321 0.04230019377814642 APAALRGRLL 10 Unmodified _APAALRGRLL_ 0 0 0 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 ENSG00000223496|ENST00000435634|EXOSC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3325805664062 2 519.33255 1036.65055 0.00045268 2.3509E-07 0.036245 1.8823E-05 0.036698 1.9058E-05 519.33253041999 37.935 0.25468 37.952 37.816 38.071 0.01704 22 11 3 0 0 0 0.092434 1 20153 20153 48.346 25.197 1 4657500 1853 10570 1299 1322 2049 2049 0.13368837079360674 APAAVAGPLL 10 Unmodified _APAAVAGPLL_ 0 0 0 REV__ENSG00000174080|ENST00000310325|CTSF REV__ENSG00000174080|ENST00000310325|CTSF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2685546875 2 440.268553 878.522553 0.75354 0.00033176 -0.54046 -0.00023795 0.21308 9.3811E-05 440.26825821609003 36.579 0.39838 32.295 32.173 32.571 -4.2835 33 24 2 0 0 0 0.086532 1 21485 21485 49.669 5.8965 1 15883000 + 1854 22766 1300 1323 2050 2050 0.07843276765481733 APADMRRGME 10 Unmodified _APADMRRGME_ 0 0 0 REV__ENST00000492217.1_1_1:19634582-19638531:-|nuORF REV__ENST00000492217.1_1_1:19634582-19638531:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.511962890625 3 378.511192 1132.51175 NaN NaN NaN NaN NaN NaN NaN 33.285 1 33.285 32.785 33.785 0 0 0 0 0.91523 1 17441 17441 3.8763 0.55669 1 + 1855 17276 1301 1324 2051 2051 -0.0492081694276294 APAEKHLHF 9 Unmodified _APAEKHLHF_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5224609375 3 350.522414 1048.54541 -0.39426 -0.0001382 0.41313 0.00014481 0.018873 6.6154E-06 350.5223516941566 20.75 0.15824 20.75 20.671 20.829 0 20 11 3 0 0 0 0.11784 1 10446 10446 31.268 25.076 1 947250 1856 8834 1302 1325 2052 2052 0.023082958829490963 APAEKHLHF 9 Unmodified _APAEKHLHF_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5222473144531 3 350.522414 1048.54541 1.049 0.00036769 2.3057 0.00080819 3.3546 0.0011759 350.52324640829755 22.677 0.49726 19.898 19.706 20.203 -2.7784 61 34 2 0 0 0 0.091924 1 12201 12201 34.932 14.518 1 8897400 1857 8834 1302 1325 2053 2053 0.023082958829490963 APAERPASLL 10 Unmodified _APAERPASLL_ 0 0 0 REV__nc|ENSG00000179526|Q9H0F6-2|SHARPIN REV__nc|ENSG00000179526|Q9H0F6-2|SHARPIN MSMS AL20221201_MKP_PDAC_01 4 512.7927856445312 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 46.215 1 41.26 40.76 41.76 -4.9549 0 0 0 0.33727 1 28503 28503 34.932 0.82963 1 + 1858 23100 1303 1326 2054 2054 0.0604514533456495 APAERQIDL 9 Unmodified _APAERQIDL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7755126953125 2 506.774731 1011.53491 NaN NaN NaN NaN NaN NaN NaN 34.922 1 34.922 34.422 35.422 0 0 0 0 0.050854 1 18435 18435 57.249 15.155 1 1859 3605 1304 1327 2055 2055 0.029602684378687627 APAERQIDL 9 Unmodified _APAERQIDL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7772521972656 2 506.774731 1011.53491 0.82675 0.00041897 -0.23631 -0.00011976 0.59043 0.00029922 506.77467338220924 39.111 0.29299 34.66 34.565 34.858 -4.4509 21 18 2 0 0 0 0.021948 1 23208 23208 61.602 25.558 1 11890000 1860 3605 1304 1327 2056 2056 0.029602684378687627 APAETLAAY 9 Unmodified _APAETLAAY_ 0 0 0 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2394409179688 2 453.732 905.449448 1.1619 0.0005272 -0.2019 -9.161E-05 0.96002 0.00043559 453.7318465646864 50.698 0.81195 45.049 44.585 45.397 -5.649 145 50 4 0 0 0 0.10925 1 31595 31595 32.117 5.2333 1 1035899999.9999999 + 1861 22691 1305 1328 2057 2057 -0.007058967478201339 APAFDRHFRTL 11 Unmodified _APAFDRHFRTL_ 0 0 0 nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426-5|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.8841857910156 3 444.238678 1329.6942 0.060382 2.6824E-05 0.20703 9.1972E-05 0.26741 0.0001188 444.2388441983322 36.686 0.25924 36.707 36.599 36.858 0.021545 25 11 3 0 0 0 0.3012 1 19446 19446 7.846 3.4399 1 4925700 1862 16308 1306 1329 2058 2058 0.04254401785851769 APAFLYDIY 9 Unmodified _APAFLYDIY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7717895507812 2 536.771126 1071.5277 0.26815 0.00014393 0.70368 0.00037771 0.97183 0.00052165 536.7713249040985 86.34 0.26538 86.34 86.175 86.441 0 21 11 2 0 0 0 0.37804 1 47803 47803 13.508 8.2772 1 403910 1863 9978 1307 1330 2059 2059 -0.0052046416258235695 APAFLYDIY 9 Unmodified _APAFLYDIY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7713012695312 2 536.771126 1071.5277 0.39007 0.00020938 0.8709 0.00046748 1.261 0.00067685 536.7715732461153 86.847 0.58983 86.344 86.066 86.656 -0.50318 61 23 3 0 0 0 0.058206 1 47525 47525 42.968 24.833 1 3523900 1864 9978 1307 1330 2060 2060 -0.0052046416258235695 APAGIPAVAL 10 Unmodified _APAGIPAVAL_ 0 0 0 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1 nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2352600097656 2 440.268553 878.522553 -0.1211 -5.3317E-05 -0.11219 -4.9392E-05 -0.23329 -0.00010271 440.26834278241574 32.247 0.21371 32.118 31.986 32.199 -0.12915 12 7 2 0 0 0 0.21472 1 16815 16815 24.674 6.5389 1 1081100 1865 7436 1308 1331 2061 2061 0.07843276765458995 APAGPLIVPY 10 Unmodified _APAGPLIVPY_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2884521484375 2 499.289485 996.564418 0.54645 0.00027283 -0.69864 -0.00034882 -0.15219 -7.5989E-05 499.28912855302565 73.782 0.34238 73.306 73.144 73.487 -0.47588 26 16 2 0 0 0 0.34789 1 40355 40355 24.674 10.092 1 1938000 1866 4363 1309 1332 2062 2062 0.06599832453991894 APAGRDLRKAL 11 Unmodified _APAGRDLRKAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 389.9031982421875 3 389.903406 1166.68839 NaN NaN NaN NaN NaN NaN NaN 25.045 1 22.162 21.662 22.662 -2.8831 0 0 0 0.55538 1 13677 13677 22.486 11.687 1 1867 16188 1310 1333 2063 2063 0.1117130327418181 APAGRKVGL 9 Unmodified _APAGRKVGL_ 0 0 0 ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF ENSG00000161016|ENST00000528957|RPL8 ENSG00000161016|ENST00000528957|RPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7718505859375 2 434.771794 867.529036 -0.39783 -0.00017296 0.058932 2.5622E-05 -0.33889 -0.00014734 434.7718120462444 18.279 0.21434 18.279 18.157 18.372 0 72 35 3 0 0 0 0.038285 1 9044 9044 50.855 10.406 1 4048900 1868 6779 1311 1334 2064 2064 0.08997214716850976 APAGRKVGL 9 Unmodified _APAGRKVGL_ 0 0 0 ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF ENSG00000161016|ENST00000528957|RPL8 ENSG00000161016|ENST00000528957|RPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.7716064453125 2 434.771794 867.529036 -0.58048 -0.00025238 0.17747 7.7159E-05 -0.40301 -0.00017522 434.7718538064584 18.221 0.19526 18.235 18.153 18.348 0.013865 97 38 4 0 0 0 0.026094 1 9090 9090 57.471 10.55 1 10930000 1869 6779 1311 1334 2065 2065 0.08997214716850976 APAGSRGLLPS 11 Unmodified _APAGSRGLLPS_ 0 0 0 REV__ENST00000406775.6_2_7:69063933-69064020:+|nuORF REV__ENST00000406775.6_2_7:69063933-69064020:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1025.524291992188 1 1025.57382 1024.56654 4.0357 0.0041389 3.783 0.0038798 7.8187 0.0080187 1025.578564096149 98.259 0.15644 98.24 98.153 98.309 -0.018188 6 5 2 0 0 0 0.50515 1 54563 54563 16.149 1.3108 1 1070000 + 1870 26659 1312 1335 2066 2066 0.05524261191817459 APAGTTFVQY 10 Unmodified _APAGTTFVQY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7632446289062 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 49.446 1 49.446 48.946 49.946 0 0 0 0 0.16406 1 27208 27208 46.021 22 1 1871 4453 1313 1336 2067 2067 -0.011505363107062294 APAGTTFVQY 10 Unmodified _APAGTTFVQY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7639770507812 2 527.763832 1053.51311 0.73723 0.00038908 0.16912 8.9257E-05 0.90635 0.00047834 527.7637589041879 49.969 0.26163 49.576 49.471 49.732 -0.3923 30 12 3 0 0 0 0.037795 1 26889 26889 64.236 40.216 1 3810300 1872 4453 1313 1336 2068 2068 -0.011505363107062294 APAGTTFVQY 10 Unmodified _APAGTTFVQY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MSMS AL20221201_MKP_PDAC_01 4 527.7645874023438 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 56.976 1 50.999 50.499 51.499 -5.9769 0 0 0 0.044772 1 36404 36404 58.679 22.552 1 1873 4453 1313 1336 2069 2069 -0.011505363107062294 APAGTTSSRVL 11 Unmodified _APAGTTSSRVL_ 0 0 0 nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2938232421875 2 530.293288 1058.57202 -0.15495 -8.2171E-05 0.34383 0.00018233 0.18888 0.00010016 530.2934915005088 25.395 0.1206 25.395 25.346 25.466 0 8 5 2 0 0 0 0.49694 1 13040 13040 16.566 4.0343 1 735510 1874 9496 1314 1337 2070 2070 0.045079399836367884 APAGWSGSRL 10 Unmodified _APAGWSGSRL_ 0 0 0 ENST00000229416.10_1_6:53409415-53409676:-|nuORF ENST00000229416.10_1_6:53409415-53409676:-|nuORF ENST00000229416.10_1_6:53409415-53409676:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2623596191406 2 501.261791 1000.50903 0.38803 0.0001945 1.0615 0.00053207 1.4495 0.00072658 501.2623046125736 35.897 0.27789 35.897 35.732 36.01 0 26 13 3 0 0 0 0.60623 1 19006 19006 10.824 2.9138 1 6900700 1875 11063 1315 1338 2071 2071 0.008794189862442181 APAHALHA 8 Unmodified _APAHALHA_ 0 0 0 REV__ENST00000375750.7_1_6:31707746-31708989:+|nuORF REV__ENST00000375750.7_1_6:31707746-31708989:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2147216796875 2 394.214112 786.413671 -0.014823 -5.8435E-06 1.7125 0.00067509 1.6977 0.00066925 394.2147242785321 38.439 0.34741 38.456 38.336 38.683 0.01704 33 16 3 0 0 0 8.7369 1 20511 20511 2.8892 0 1 12655000 + 1876 26212 1316 1339 2072 2072 0.011921105858391456 APAHGIRP 8 Unmodified _APAHGIRP_ 0 0 0 ENST00000403150.5_1_7:1580798-1581936:+|nuORF ENST00000403150.5_1_7:1580798-1581936:+|nuORF ENST00000403150.5_1_7:1580798-1581936:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2105102539062 2 409.735212 817.455871 -0.39432 -0.00016156 -0.31646 -0.00012966 -0.71077 -0.00029123 409.73501044378327 29.38 0.2883 29.38 29.182 29.47 0 19 13 2 0 0 0 8.7369 1 15209 15209 2.8892 0.31174 1 778640 1877 12903 1317 1340 2073 2073 0.03984085994227371 APAHLGNRLDF 11 Unmodified _APAHLGNRLDF_ 0 0 0 REV__ENST00000518659.5_1_5:167379791-167474486:+|nuORF REV__ENST00000518659.5_1_5:167379791-167474486:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.820556640625 2 605.820004 1209.62546 -0.27961 -0.00016939 1.1126 0.00067403 0.83298 0.00050464 605.820614709609 33.561 0.30583 33.402 33.247 33.553 -0.15918 36 12 4 0 0 0 0.48615 1 17479 17479 17.113 3.2068 1 5805200 + 1878 28248 1318 1341 2074 2074 0.029027374861243516 APAIFMCA 8 Unmodified _APAIFMCA_ 0 0 0 REV__ENST00000530124.5_2_11:62201034-62201283:-|nuORF REV__ENST00000530124.5_2_11:62201034-62201283:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.1953430175781 2 412.195685 822.376817 -0.060559 -2.4962E-05 -1.3023 -0.00053679 -1.3628 -0.00056175 412.19514629122443 72.898 0.36943 72.94 72.719 73.089 0.041733 31 17 2 0 0 0 0.80975 1 40115 40115 0.79363 0.10326 1 10933000 + 1879 28435 1319 1342 2075 2075 -0.041476453465861596 APAIGRYIRTL 11 Unmodified _APAIGRYIRTL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.9154968261719 3 410.915423 1229.72444 0.40396 0.00016599 -0.38151 -0.00015677 0.022453 9.2264E-06 410.915194071839 50.787 0.25303 50.733 50.57 50.823 -0.053871 27 12 3 0 0 0 0.53099 1 27445 27445 14.838 6.0861 1 3519600 1880 4858 1320 1343 2076 2076 0.11876760451059454 APAIHQIVL 9 Unmodified _APAIHQIVL_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2953186035156 2 481.295102 960.575651 NaN NaN NaN NaN NaN NaN NaN 54.256 1 53.789 53.289 54.289 -0.46664 0 0 0 0.086291 1 29395 29395 46.921 14.804 1 1881 9728 1321 1344 2077 2077 0.09378654548117993 APAIIFYG 8 Unmodified _APAIIFYG_ 0 0 0 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2352294921875 2 426.236722 850.45889 NaN NaN NaN NaN NaN NaN NaN 17.867 1 17.867 17.367 18.367 0 0 0 0 0.9185 1 8840 8840 17.087 0 1 1882 525 1322 1345 2078 2078 0.027679163283778507 APAIRSVL 8 Unmodified _APAIRSVL_ 0 0 0 REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF REV__ENST00000464285.5_1_20:25434089-25439234:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.515869140625 1 826.514514 825.507237 1.6915 0.001398 -0.66637 -0.00055076 1.0251 0.00084725 826.5141235049792 105.03 0.1174 98.852 98.773 98.891 -6.1757 15 9 2 0 0 0 0.80624 1 70311 70311 2.8892 0 1 42492000 + 1883 18125 1323 1346 2079 2079 0.08750409968274653 APAKCFEYY 9 Carbamidomethyl (C) _APAKC(Carbamidomethyl (C))FEYY_ APAKC(1)FEYY APAKC(66)FEYY 0 1 0 ENST00000459912.5_1_10:5682668-5684508:-|nuORF;ENSG00000196372|ENST00000357700|ASB13 ENST00000459912.5_1_10:5682668-5684508:-|nuORF ENST00000459912.5_1_10:5682668-5684508:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.75927734375 2 574.757692 1147.50083 1.0596 0.00060902 -0.91802 -0.00052764 0.14159 8.1378E-05 574.7574785979617 42.534 0.22372 37.85 37.693 37.917 -4.6846 25 15 2 0 0 0 0.017075 1 25663 25663 66.457 46.003 1 20806000 1884 9807 1324 1347 2080 2080 896 -0.06701896045410649 APALARTLQSL 11 Unmodified _APALARTLQSL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145654528-145657901:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8408813476562 2 570.840405 1139.66626 0.29545 0.00016865 0.31439 0.00017947 0.60984 0.00034812 570.8406373286231 59.856 0.28313 59.803 59.655 59.938 -0.053062 31 13 3 0 0 0 0.015914 1 32608 32608 80.896 27.492 1 5266400 1885 6769 1325 1348 2081 2081 0.10201078805766883 APALEETWS 9 Unmodified _APALEETWS_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7907409667969 2 502.24019 1002.46583 1.0862 0.00054555 3.8042 0.0019106 4.8905 0.0024562 502.2415796222669 59.374 0.30093 53.26 53.093 53.394 -6.1147 20 16 2 0 0 0 0.17666 1 38203 38203 19.439 2.4967 1 16627000 1886 6716 1326 1349 2082 2082 -0.03530815581711977 APALKKAEI 9 Unmodified _APALKKAEI_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7949523925781 2 470.794935 939.575317 -0.034954 -1.6456E-05 -0.18519 -8.7187E-05 -0.22014 -0.00010364 470.79489411649195 23.567 0.15393 23.567 23.469 23.623 0 14 7 2 0 0 0 0.2324 1 11994 11994 20.415 3.3016 1 704220 1887 1125;8419 1327 1350 2083 2083 0.10311234828270699 APALPPKD 8 Unmodified _APALPPKD_ 0 0 0 REV__ENST00000432006.1_1_7:16624422-16624878:-|nuORF REV__ENST00000432006.1_1_7:16624422-16624878:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.5504760742188 2 404.731803 807.449054 NaN NaN NaN NaN NaN NaN NaN 78.402 1 72.227 71.727 72.727 -6.1757 0 0 0 0.90769 1 51318 51318 18.135 4.6271 1 + 1888 26983 1328 1351 2084 2084 0.037627283229994646 APALPPPAF 9 Unmodified _APALPPPAF_ 0 0 0 nc|ENSG00000157110|Q93062-3|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7508850097656 2 440.749996 879.485439 0.34607 0.00015253 -0.085679 -3.7763E-05 0.2604 0.00011477 440.7498104633492 64.965 1.2181 64.481 63.93 65.148 -0.48428 91 56 3 0 0 0 0.01018 4 35443 35331;35443;35547;35676 79.935 51.761 1 2214300 1889 16296 1329 1352 2085;2086;2087;2088 2086 0.04087605219706347 APALPPPAF 9 Unmodified _APALPPPAF_ 0 0 0 nc|ENSG00000157110|Q93062-3|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7507019042969 2 440.749996 879.485439 1.2368 0.0005451 -0.17113 -7.5427E-05 1.0656 0.00046967 440.74984991429307 71.033 0.67458 64.857 64.514 65.189 -6.1757 37 33 2 0 0 0 0.0081202 1 46441 46441 93.763 48.013 1 19043000 1890 16296 1329 1352 2089 2089 0.04087605219706347 APALPTSAM 9 Oxidation (M) _APALPTSAM(Oxidation (M))_ APALPTSAM(1) APALPTSAM(47) 0 0 1 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7200317382812 2 437.720578 873.426604 -0.36372 -0.00015921 -0.97653 -0.00042745 -1.3402 -0.00058665 437.72036024818516 33.678 0.26387 33.678 33.6 33.864 0 19 13 2 0 0 0 0.045537 1 17705 17705 46.921 23.772 1 2097900 1891 8225 1330 1353 2090 2090 1394 -0.01517239136921944 APALRPLVI 9 Unmodified _APALRPLVI_ 0 0 0 nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA;nc|ENSG00000245848|P49715-3|CEBPA nc|ENSG00000245848|P49715-2|CEBPA nc|ENSG00000245848|P49715-2|CEBPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.3131103515625 2 475.313295 948.612037 0.3984 0.00018936 -0.72266 -0.00034349 -0.32426 -0.00015413 475.3129052411346 63.253 0.29222 63.232 63.109 63.402 -0.021614 25 14 2 0 0 0 0.019303 1 34613 34613 64.236 6.765 1 5121500 1892 10734 1331 1354 2091 2091 0.1356753144484628 APALRPLVI 9 Unmodified _APALRPLVI_ 0 0 0 nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA;nc|ENSG00000245848|P49715-3|CEBPA nc|ENSG00000245848|P49715-2|CEBPA nc|ENSG00000245848|P49715-2|CEBPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.3131408691406 2 475.313295 948.612037 0.69019 0.00032805 -0.42042 -0.00019983 0.26977 0.00012822 475.31311716100794 68.289 0.19408 62.113 62.011 62.205 -6.1757 13 11 2 0 0 0 0.019303 1 44607 44607 64.236 6.765 1 13949000 1893 10734 1331 1354 2092 2092 0.1356753144484628 APALTLKNL 9 Unmodified _APALTLKNL_ 0 0 0 nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7951354980469 2 470.794935 939.575317 0.26448 0.00012452 0.57458 0.00027051 0.83906 0.00039502 470.79516234607377 26.355 0.20278 23.404 23.319 23.522 -2.9511 17 10 2 0 0 0 0.08691 1 14582 14582 36.127 0 1 5396200 1894 3402 1332 1355 2093 2093 0.10311234828293436 APANHQVVY 9 Unmodified _APANHQVVY_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7572631835938 2 499.756341 997.498129 -0.035153 -1.7568E-05 2.2584 0.0011286 2.2232 0.0011111 499.75695136057095 23.263 0.30045 23.263 23.087 23.387 0 31 14 3 0 0 0 0.30562 1 11810 11810 16.942 7.5949 1 1295700 1895 8126 1333 1356 2094 2094 -0.0007198338804528248 APANHQVVY 9 Unmodified _APANHQVVY_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7538452148438 2 499.756341 997.498129 0.010643 5.3191E-06 0.054593 2.7283E-05 0.065236 3.2602E-05 499.7561896617215 25.823 0.26841 22.872 22.644 22.913 -2.9511 23 16 2 0 0 0 0.038285 1 14116 14116 50.855 16.668 1 6682000 1896 8126 1333 1356 2095 2095 -0.0007198338804528248 APAPAAQRL 9 Unmodified _APAPAAQRL_ 0 0 0 nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;ENST00000468665.1_1_1:28337454-28343730:-|nuORF nc|ENSG00000158161|Q99504-4|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7614440917969 2 447.761426 893.5083 0.65999 0.00029552 -2.3418 -0.0010485 -1.6818 -0.00075303 447.7602201678783 27.038 0.28885 24.002 23.816 24.105 -3.0365 24 14 2 0 0 0 0.031062 1 14907 14907 54.774 6.4277 1 9685600 1897 6569 1334 1357 2096 2096 0.057286243371777346 APAPAARLQ 9 Unmodified _APAPAARLQ_ 0 0 0 ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF ENST00000602583.5_1_16:85741395-85741617:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.761962890625 2 447.761426 893.5083 -0.072377 -3.2408E-05 0.35134 0.00015732 0.27896 0.00012491 447.7616385305283 24.102 0.21542 24.102 23.975 24.19 0 21 10 3 0 0 0 0.095405 1 12308 12308 34.102 0 1 1626700 1898 15821 1335 1358 2097 2097 0.057286243371777346 APAPAGQQQM 10 Unmodified _APAPAGQQQM_ 0 0 0 nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7384643554688 2 499.739834 997.465115 -0.43826 -0.00021901 -1.8444 -0.0009217 -2.2826 -0.0011407 499.738852528725 34.059 0.1997 33.867 33.744 33.944 -0.19131 14 7 2 0 0 0 0.6966 1 17780 17780 3.2813 1.2216 1 1025800 1899 16080 1336 1359 2098 2098 -0.03371933502410229 APAPALVAVA 10 Unmodified _APAPALVAVA_ 0 0 0 REV__ENSG00000129757|ENST00000440480|CDKN1C REV__ENSG00000129757|ENST00000440480|CDKN1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.269287109375 2 440.268553 878.522553 -0.1211 -5.3317E-05 -0.11219 -4.9392E-05 -0.23329 -0.00010271 440.26834278241574 32.247 0.21371 32.118 31.986 32.199 -0.12915 12 7 2 0 0 0 0.46535 1 16802 16802 18.135 0 1 1081100 + 1900 19685 1337 1360 2099 2099 0.07843276765458995 APAPAPIHNQF 11 Unmodified _APAPAPIHNQF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8011474609375 2 581.803823 1161.59309 0.93037 0.00054129 -4.2927 -0.0024975 -3.3624 -0.0019562 581.7991714266452 42.473 0.55026 37.789 37.521 38.072 -4.6846 78 36 3 0 0 0 0.014934 2 25660 25660;25791 62.573 22.758 1 27854000 1901 730 1338 1361 2100;2101 2100 0.01875950083126554 APAPARSLL 9 Unmodified _APAPARSLL_ 0 0 0 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 ENSG00000189114|ENST00000433642|BLOC1S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2719421386719 2 448.271627 894.528701 -0.090708 -4.0662E-05 -0.14045 -6.296E-05 -0.23116 -0.00010362 448.2714478832549 39.113 0.20601 38.826 38.719 38.925 -0.28687 17 8 3 0 0 0 0.1685 1 20613 20613 26.268 3.5319 1 2717300 1902 9731 1339 1362 2102 2102 0.07721794997007692 APAPASISL 9 Unmodified _APAPASISL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000464763.5_1_2:220094544-220095147:+|nuORF;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000486203.5_1_2:220094592-220097474:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.4664916992188 1 826.466895 825.459619 0.3178 0.00026265 -0.14343 -0.00011854 0.17437 0.00014411 826.4668297228606 53.757 0.27033 53.757 53.606 53.876 0 18 12 2 0 0 0 0.0083087 1 29790 29790 97.075 4.2525 1 2181400 1903 7008 1340 1363 2103 2103 0.03990710977427625 APAPDGRSCL 10 Carbamidomethyl (C) _APAPDGRSC(Carbamidomethyl (C))L_ APAPDGRSC(1)L APAPDGRSC(52)L 0 1 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2508544921875 2 522.250566 1042.48658 0.38677 0.00020199 -0.86107 -0.0004497 -0.4743 -0.0002477 522.2500414923611 26.306 0.33795 23.355 23.184 23.522 -2.9511 29 18 2 0 0 0 0.077785 1 14448 14448 51.63 7.7715 1 6774500 1904 7709 1341 1364 2104 2104 749 -0.03296548473713301 APAPEAYGY 9 Unmodified _APAPEAYGY_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4246215820312 1 938.425424 937.418148 0.070781 6.6423E-05 -0.34835 -0.0003269 -0.27757 -0.00026048 938.424443256674 37.306 0.095078 37.306 37.238 37.333 0 7 4 2 0 0 0 0.41742 1 19845 19845 11.64 2.2929 1 734570 1905 16138 1342 1365 2105 2105 -0.05306469781908163 APAPEVGRTL 10 Unmodified _APAPEVGRTL_ 0 0 0 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.2442626953125 2 505.785099 1009.55564 0.64399 0.00032572 -0.23351 -0.00011811 0.41048 0.00020761 506.2866912344135 38.301 0.22219 33.932 33.87 34.092 -4.3689 17 13 2 0 0 0 0.16345 1 22543 22543 27.223 7.9662 1 7098100 1906 16139 1343 1366 2106 2106 0.051248588175326404 APAPEVGRTL 10 Unmodified _APAPEVGRTL_ 0 0 0 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.785099 1009.55564 -0.13996 -7.079E-05 -2.3263 -0.0011766 -2.4663 -0.0012474 505.78402508431725 33.598 0.28184 33.598 33.559 33.841 0 -0.16704 -0.0010973 NaN 21.59 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4214500 1907 16139 1343 1366 0.051248588175326404 APAPIHNQF 9 Unmodified _APAPIHNQF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7579345703125 2 497.758884 993.503215 -1.0359 -0.00051562 -0.26143 -0.00013013 -1.2973 -0.00064575 497.7587904328648 32.366 0.34909 32.366 32.164 32.513 0 53 20 4 0 0 0 0.010877 2 16870 16842;16870 77.984 35.89 1 54747000 1908 730 1344 1367 2107;2108 2108 0.006203204745702351 APAPIHNQF 9 Unmodified _APAPIHNQF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7579956054688 2 497.758884 993.503215 NaN NaN NaN NaN NaN NaN NaN 32.516 1 32.516 32.016 33.016 0 0 0 0 0.20498 1 16992 16992 30.225 9.3536 1 1909 730 1344 1367 2109 2109 0.006203204745702351 APAPIHNQF 9 Unmodified _APAPIHNQF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7599792480469 2 497.758884 993.503215 -0.18735 -9.3257E-05 0.75487 0.00037574 0.56751 0.00028248 497.7591632067591 32.373 0.37403 32.243 32.042 32.416 -0.12915 38 15 4 0 0 0 0.0088975 2 16804 16804;16914 104.8 62.705 1 13464000 1910 730 1344 1367 2110;2111 2110 0.006203204745702351 APAPIHNQF 9 Unmodified _APAPIHNQF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7592468261719 2 497.758884 993.503215 0.62309 0.00031015 0.020646 1.0277E-05 0.64374 0.00032043 497.75894937859636 36.547 0.52996 32.264 32.01 32.54 -4.2835 86 32 3 0 0 0 0.0048787 3 21477 21244;21361;21477 117.6 75.504 1 175000000 1911 730 1344 1367 2112;2113;2114 2114 0.006203204745702351 APAPKAYVL 9 Unmodified _APAPKAYVL_ 0 0 0 ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7774658203125 2 465.276378 928.538203 0.0034234 1.5928E-06 -0.30744 -0.00014305 -0.30402 -0.00014145 465.27638664321313 41.008 0.30074 41.008 40.895 41.196 0 37 19 3 0 0 0 0.022193 2 22051 22051;22163 61.357 11.689 1 16450000 1912 9230 1345 1368 2115;2116 2115 0.07107563282522733 APAPKAYVL 9 Unmodified _APAPKAYVL_ 0 0 0 ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2757568359375 2 465.276378 928.538203 -0.13272 -6.1754E-05 0.22206 0.00010332 0.089338 4.1567E-05 465.27651897329434 41.352 0.32736 41.049 40.887 41.214 -0.30304 37 15 3 0 0 0 0.022193 1 21870 21870 61.357 11.689 1 12780000 1913 9230 1345 1368 2117 2117 0.07107563282522733 APAPKAYVL 9 Unmodified _APAPKAYVL_ 0 0 0 ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2766418457031 2 465.276378 928.538203 0.22536 0.00010485 -0.31311 -0.00014568 -0.087745 -4.0826E-05 465.2759989869822 41.024 0.24491 41.022 40.891 41.136 -0.0017929 20 11 2 0 0 0 0.052168 1 21924 21924 44.407 3.9584 1 1490600 1914 9230 1345 1368 2118 2118 0.07107563282522733 APAPKAYVL 9 Unmodified _APAPKAYVL_ 0 0 0 ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP ENSG00000184207|ENST00000333503|PGP MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2769775390625 2 465.276378 928.538203 0.66164 0.00030784 -0.56119 -0.00026111 0.10044 4.6734E-05 465.2759815279476 45.659 0.51129 40.704 40.425 40.936 -4.9549 89 34 3 0 0 0 0.022193 3 27888 27888;28029;28185 61.357 11.689 1 100500000 1915 9230 1345 1368 2119;2120;2121 2119 0.07107563282522733 APAPKKGS 8 Unmodified _APAPKKGS_ 0 0 0 ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;nc|ENSG00000220323|Q6DRA6|H2BC19P;ENST00000609585.1_1_1:149399050-149399179:-|nuORF;nc|ENSG00000261716|Q6DN03|H2BC20P ENSG00000234289|ENST00000599962|H2BC12L ENSG00000234289|ENST00000599962|H2BC12L MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2247619628906 2 378.224146 754.433738 2.0598 0.00077907 0.47621 0.00018011 2.536 0.00095918 378.22421933579255 108.15 2.906 101.98 100.29 103.2 -6.1757 775 534 2 0 0 0 0.80992 1 71872 71872 0.69038 0 1 11528000 1916 3808 1346 1369 2122 2122 0.04669861525815122 APAPKPEAA 9 Unmodified _APAPKPEAA_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MSMS AL20221201_MKP_PDAC_01 4 426.2346801757812 2 426.23471 850.454868 NaN NaN NaN NaN NaN NaN NaN 19.573 1 16.917 16.417 17.417 -2.6564 0 0 0 0.16996 1 10380 10380 34.402 0.21439 1 1917 10386 1347 1370 2123 2123 0.023658268346594014 APAPLAGSTV 10 Unmodified _APAPLAGSTV_ 0 0 0 REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7493896484375 2 442.247818 882.481082 1.1708 0.0005178 1.043 0.00046127 2.2138 0.00097907 442.2482814520835 32.22 0.33532 28.364 28.198 28.533 -3.8562 26 19 2 0 0 0 0.37389 1 18317 18317 23.148 0 1 10880000 + 1918 29012 1348 1371 2124 2124 0.035140960061426085 APAPLLPVY 9 Unmodified _APAPLLPVY_ 0 0 0 ENSG00000131067|ENST00000336431|GGT7 ENSG00000131067|ENST00000336431|GGT7 ENSG00000131067|ENST00000336431|GGT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.5493774414062 1 940.550231 939.542954 -0.85203 -0.00080138 0.91586 0.00086142 0.063836 6.0041E-05 940.5509935967833 77.723 0.21097 77.24 77.101 77.312 -0.4826 13 8 2 0 0 0 0.047696 1 42534 42534 45.75 17.577 1 570180 1919 4294 1349 1372 2125 2125 0.0707644742527691 APAPLRQVL 9 Unmodified _APAPLRQVL_ 0 0 0 ENST00000496720.1_1_22:50722364-50724624:-|nuORF ENST00000496720.1_1_22:50722364-50724624:-|nuORF ENST00000496720.1_1_22:50722364-50724624:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.8010559082031 2 482.800552 963.58655 0.73941 0.00035699 0.53575 0.00025866 1.2752 0.00061565 482.8007934464739 47.596 0.20259 47.243 47.125 47.328 -0.3526 14 9 2 0 0 0 0.095405 1 25524 25524 34.102 14.845 1 1369500 1920 14381 1350 1373 2126 2126 0.10330056922407493 APAPPASQY 9 Unmodified _APAPPASQY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2247009277344 2 451.224342 900.434132 -0.38431 -0.00017341 0.33242 0.00015 -0.051887 -2.3413E-05 451.2244532206213 27.796 0.36738 27.796 27.617 27.985 0 53 17 4 0 0 0 0.019303 2 14280 14280;14377 64.236 22.142 1 28036000 1921 728 1351 1374 2127;2128 2127 -0.020067635450004673 APAPPASQY 9 Unmodified _APAPPASQY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 901.4415893554688 1 901.441409 900.434132 -0.73434 -0.00066196 0.39141 0.00035283 -0.34293 -0.00030913 901.4427817052668 27.783 0.24446 27.783 27.679 27.924 0 19 11 2 0 0 0 0.010611 1 14320 14320 78.728 24.895 1 1618700 1922 728 1351 1374 2129 2129 -0.020067635450004673 APAPPASQY 9 Unmodified _APAPPASQY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2256774902344 2 451.224342 900.434132 1.1472 0.00051766 0.71591 0.00032304 1.8632 0.0008407 451.2250284238041 32.235 0.68119 28.378 28.133 28.814 -3.8562 72 38 3 0 0 0 0.019303 2 18243 18243;18369 64.236 20.378 1 39654000 1923 728 1351 1374 2130;2131 2130 -0.020067635450004673 APAPPSKVI 9 Unmodified _APAPPSKVI_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2686767578125 2 440.268553 878.522553 -0.895 -0.00039404 0.50629 0.0002229 -0.38872 -0.00017114 440.26871497386685 32.287 0.20881 32.287 32.146 32.355 0 15 10 2 0 0 0 0.15471 1 16821 16821 27.629 2.9549 1 2414800 1924 16039 1352 1375 2132 2132 0.07843276765481733 APAPPSKVI 9 Unmodified _APAPPSKVI_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2682800292969 2 440.268553 878.522553 0.75354 0.00033176 -0.54046 -0.00023795 0.21308 9.3811E-05 440.26825821609003 36.579 0.39838 32.295 32.173 32.571 -4.2835 33 24 2 0 0 0 0.029718 1 21355 21355 55.503 5.8338 1 15883000 1925 16039 1352 1375 2133 2133 0.07843276765481733 APAPPTVSI 9 Unmodified _APAPPTVSI_ 0 0 0 REV__nc|ENSG00000132849|Q8NI35-4|PATJ REV__nc|ENSG00000132849|Q8NI35-4|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7450256347656 2 426.744911 851.475269 0.2747 0.00011722 -0.088051 -3.7575E-05 0.18664 7.965E-05 426.74484259646107 58.025 0.61227 58.025 57.754 58.366 0 34 24 2 0 0 0 0.14602 1 32296 32296 28.487 1.6032 1 796730 + 1926 19886 1353 1376 2134 2134 0.04358997494466621 APAPQAAF 8 Unmodified _APAPQAAF_ 0 0 0 REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2249755859375 2 386.703046 771.391539 0.47169 0.00018241 2.9846 0.0011542 3.4563 0.0013366 386.70331381865475 40.346 0.21008 40.049 39.923 40.133 -0.29716 15 9 2 0 0 0 8.7369 1 21326 21326 2.8892 0.31174 1 639590 + 1927 24813 1354 1377 2135 2135 -0.003301138825804628 APAPQGVRL 9 Unmodified _APAPQGVRL_ 0 0 0 ENST00000492431.1_1_1:109822777-109824720:-|nuORF;ENSG00000134222|ENST00000369909|PSRC1;ENST00000459765.1_1_1:109824234-109825347:-|nuORF;nc|ENSG00000134222|Q6PGN9-3|PSRC1;nc|ENSG00000134222|Q6PGN9|PSRC1 ENST00000492431.1_1_1:109822777-109824720:-|nuORF ENST00000492431.1_1_1:109822777-109824720:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7704772949219 2 454.769252 907.52395 0.98001 0.00044568 -0.018805 -8.552E-06 0.9612 0.00043713 454.7692522838548 39.264 0.27595 34.814 34.704 34.98 -4.4509 28 16 2 0 0 0 0.026094 1 23261 23261 57.471 13.064 1 13368000 1928 4571 1355 1378 2136 2136 0.06648910854232781 APAPSKGQTL 10 Unmodified _APAPSKGQTL_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MSMS AL20221201_MKP_PDAC_01 4 485.2757568359375 2 485.271824 968.529095 NaN NaN NaN NaN NaN NaN NaN 21.577 1 18.842 18.342 19.342 -2.7348 0 0 0 0.073691 1 11571 11571 53.404 8.997 1 1929 7582 1356 1379 2137 2137 0.04357169926197457 APAPSPAAAAT 11 Unmodified _APAPSPAAAAT_ 0 0 0 ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2427368164062 2 462.742899 923.471246 0.72526 0.00033561 -0.77144 -0.00035698 -0.04618 -2.137E-05 462.74255831772376 45.757 0.5599 45.757 45.379 45.939 0 88 29 5 0 0 0 0.35243 1 24765 24765 24.021 5.8856 1 289900000 1930 4216 1357 1380 2138 2138 0.006449080007428165 APAPSTVHF 9 Unmodified _APAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7406921386719 2 463.74016 925.465767 0.68698 0.00031858 -1.1152 -0.00051718 -0.42826 -0.0001986 463.739700507335 38.124 0.61519 38.124 37.724 38.339 0 109 36 5 0 0 0 0.0094915 2 20254 20254;20362 81.864 45.82 1 194910000 1931 6367 1358 1381 2139;2140 2139 5.229208954915521E-05 APAPSTVHF 9 Unmodified _APAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.741455078125 2 463.74016 925.465767 -0.12352 -5.7281E-05 0.99912 0.00046333 0.8756 0.00040605 463.74057366408016 38.377 0.41662 38.09 37.866 38.283 -0.28687 62 18 4 0 0 0 0.0086179 2 20140 20140;20243 89.427 53.383 1 39158000 1932 6367 1358 1381 2141;2142 2141 5.229208954915521E-05 APAPSTVHF 9 Unmodified _APAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7405700683594 2 463.74016 925.465767 0.08415 3.9024E-05 0.55037 0.00025523 0.63452 0.00029425 463.74038994281017 38.004 0.24822 38.021 37.902 38.151 0.01704 20 11 2 0 0 0 0.03327 1 20203 20203 53.576 28.902 1 1925100 1933 6367 1358 1381 2143 2143 5.229208954915521E-05 APAPSTVHF 9 Unmodified _APAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.740234375 2 463.74016 925.465767 1.0177 0.00047194 -0.30664 -0.0001422 0.71104 0.00032974 463.73995733488914 42.747 0.66613 38.062 37.764 38.431 -4.6846 145 43 4 0 0 0 0.0094915 4 26074 25688;25808;25934;26074 81.864 37.457 1 521000000 1934 6367 1358 1381 2144;2145;2146;2147 2147 5.229208954915521E-05 APAPTGYIS 9 Unmodified _APAPTGYIS_ 0 0 0 REV__ENST00000332427.6_1_12:12837430-12849030:-|nuORF REV__ENST00000332427.6_1_12:12837430-12849030:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7279663085938 2 438.726718 875.438883 NaN NaN NaN NaN NaN NaN NaN 76.611 1 76.131 75.631 76.631 -0.47945 0 0 0 0.82396 1 41944 41944 4.756 1.8668 1 + 1935 25610 1359 1382 2148 2148 -0.003818794022322436 APAPTPILA 9 Unmodified _APAPTPILA_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 850.5045166015625 1 850.503281 849.496004 0.74295 0.00063188 1.7306 0.0014719 2.4736 0.0021038 850.5045123561612 102.14 0.12981 95.965 95.898 96.027 -6.1757 13 5 3 0 0 0 0.39863 1 68542 68542 12.532 0.89125 1 16937000 1936 3315 1360 1383 2149 2149 0.06523587874141867 APAPVINSKY 10 Unmodified _APAPVINSKY_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2952880859375 2 530.295299 1058.57605 1.0284 0.00054537 -0.76435 -0.00040533 0.26407 0.00014003 530.2948054006954 38.035 0.39976 33.666 33.456 33.855 -4.3689 40 23 2 0 0 0 0.13008 1 22379 22379 42.312 6.2683 1 11355000 1937 2699 1361 1384 2150 2150 0.049100294773325004 APAPVQPPM 9 Oxidation (M) _APAPVQPPM(Oxidation (M))_ APAPVQPPM(1) APAPVQPPM(43) 0 0 1 ARID1A-WDTC1|1|fusion;ARID1A|p.S1930*|1|0.47|ENSG00000117713|chr1:26779687-26779687|C/-|frameshift_variant;ARID1A|p.G1926Efs*30|1|0.23|ENSG00000117713|chr1:26779674-26779674|G/-|frameshift_variant;ARID1A-WDTC1|2|fusion;nc|ENSG00000117713|O14497-3|ARID1A;ARID1A|p.C2276Ffs*7|1|0.08|ENSG00000117713|chr1:26780721-26780722|-/TT|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A ARID1A-WDTC1|1|fusion;nc|ENSG00000117713|O14497-3|ARID1A ARID1A-WDTC1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2359008789062 2 462.236396 922.458238 -0.049164 -2.2726E-05 -2.2304 -0.001031 -2.2796 -0.0010537 462.2351036759251 30.615 0.65038 30.615 30.363 31.013 0 50 31 2 0 0 0 0.058206 1 15917 15917 42.968 28.386 1 1576200 1938 36;37 1362 1385 2151 2151 0 -0.006092463829645567 APAQGLLRPIL 11 Unmodified _APAQGLLRPIL_ 0 0 0 ENSG00000052344|ENST00000317508|PRSS8;nc|ENSG00000052344|Q16651-2|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.9412231445312 2 574.861141 1147.70773 0.62695 0.00036041 0.85774 0.00049308 1.4847 0.00085349 574.8613988923237 69.137 0.17598 69.168 69.051 69.227 0.030914 14 8 2 0 0 0 0.07654 1 38002 38002 45.7 27.553 1 1186700 1939 738 1363 1386 2152 2152 0.13978259565078588 APAQLAESM 9 Unmodified _APAQLAESM_ 0 0 0 REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2242126464844 2 459.223485 916.432418 0.73683 0.00033837 -4.0662 -0.0018673 -3.3294 -0.0015289 459.2234622643629 42.258 0.39566 37.573 37.351 37.747 -4.6846 61 25 3 0 0 0 0.07916 1 25441 25441 37.974 5.857 1 22454000 + 1940 27877 1364 1387 2153 2153 -0.029141406252506385 APAQPSIRY 9 Unmodified _APAQPSIRY_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7709350585938 2 501.771991 1001.52943 -0.75713 -0.00037991 -0.98062 -0.00049205 -1.7378 -0.00087195 501.77192530433916 32.281 0.17116 32.281 32.184 32.355 0 15 8 3 0 0 0 0.07916 1 16876 16876 37.974 8.8924 1 1425800 1941 1195 1365 1388 2154 2154 0.028725896460514377 APAQPSIRY 9 Unmodified _APAQPSIRY_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7733459472656 2 501.771991 1001.52943 0.79407 0.00039844 -0.75633 -0.0003795 0.037739 1.8936E-05 501.77213253371406 36.238 0.29915 32.045 31.853 32.152 -4.1928 25 17 2 0 0 0 0.011671 1 21111 21111 75.761 10.526 1 11976000 1942 1195 1365 1388 2155 2155 0.028725896460514377 APAQRPQL 8 Unmodified _APAQRPQL_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A;nc|ENSG00000087074|O75807-2|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7528991699219 2 440.753601 879.49265 -0.12912 -5.6909E-05 -0.17261 -7.6078E-05 -0.30173 -0.00013299 440.7533654070729 23.701 0.16395 23.701 23.588 23.752 0 13 8 2 0 0 0 0.61462 1 12089 12089 24.674 2.9272 1 398840 1943 1449 1366 1389 2156 2156 0.048083378201340565 APAQRPQL 8 Unmodified _APAQRPQL_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A;nc|ENSG00000087074|O75807-2|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 440.2317810058594 2 440.753601 879.49265 0.4248 0.00018723 0.10994 4.8458E-05 0.53475 0.00023569 440.7536831908536 26.32 0.20889 23.369 23.23 23.439 -2.9511 17 11 2 0 0 0 8.7369 1 14475 14475 46.921 14.804 1 3265700 1944 1449 1366 1389 2157 2157 0.048083378201340565 APAQVRVCVK 10 Unmodified _APAQVRVCVK_ 0 0 0 REV__ENST00000525531.5_1_11:117070387-117070495:+|nuORF REV__ENST00000525531.5_1_11:117070387-117070495:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.811279296875 2 535.810593 1069.60663 NaN NaN NaN NaN NaN NaN NaN 25.683 1 22.732 22.232 23.232 -2.9511 0 0 0 0.91523 1 14079 14079 7.2892 0 1 + 1945 28356 1367 1390 2158 2158 0.07461484590726286 APARASVIL 9 Unmodified _APARASVIL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000471226.5_1_3:183906109-183906933:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2798767089844 2 449.279452 896.544351 0.52053 0.00023386 -0.063835 -2.868E-05 0.4567 0.00020519 449.27944378907915 40.726 0.26803 40.423 40.275 40.543 -0.30304 24 12 3 0 0 0 0.15471 1 21506 21506 27.629 9.4825 1 2907600 1946 6787 1368 1391 2159 2159 0.09194081514044683 APARASVIL 9 Unmodified _APARASVIL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000471226.5_1_3:183906109-183906933:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2795104980469 2 449.279452 896.544351 0.70841 0.00031827 0.12648 5.6826E-05 0.83489 0.0003751 449.2794640673557 44.81 0.35886 39.958 39.789 40.148 -4.852 41 26 2 0 0 0 0.047788 2 27323 27323;27464 45.7 16.618 1 12297000 1947 6787 1368 1391 2160;2161 2160 0.09194081514044683 APARCLTIAF 10 Carbamidomethyl (C) _APARC(Carbamidomethyl (C))LTIAF_ APARC(1)LTIAF APARC(53)LTIAF 0 1 0 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.303466796875 2 560.302601 1118.59065 1.4986 0.00083969 0.0023453 1.3141E-06 1.501 0.000841 560.302548596741 64.447 0.91007 58.272 58.09 59 -6.1757 121 50 3 0 0 0 0.06987 2 41928 41794;41928 53.404 31.657 1 74250000 1948 6807 1369 1392 2162;2163 2163 671 0.03609778353825277 APARGLLLF 9 Unmodified _APARGLLLF_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2980346679688 2 479.297645 956.580737 0.28199 0.00013516 0.72647 0.0003482 1.0085 0.00048336 479.2978822197347 73.529 0.41978 73.573 73.361 73.781 0.043983 44 18 3 0 0 0 0.047196 2 40462 40462;40562 46.021 7.8698 1 7776300 1949 526 1370 1393 2164;2165 2164 0.10070958410756248 APARLFAL 8 Unmodified _APARLFAL_ 0 0 0 nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4 nc|ENSG00000124145|P31431-2|SDC4 nc|ENSG00000124145|P31431-2|SDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.763671875 2 429.763438 857.512323 0.37224 0.00015998 0.2488 0.00010692 0.62104 0.0002669 429.76351296394876 61.621 0.31749 61.588 61.435 61.753 -0.032787 43 15 4 0 0 0 0.26159 2 33601 33601;33699 60.39 14.811 1 23162000 1950 3748 1371 1394 2166;2167 2166 0.07786713830898861 APARLFAL 8 Unmodified _APARLFAL_ 0 0 0 nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4 nc|ENSG00000124145|P31431-2|SDC4 nc|ENSG00000124145|P31431-2|SDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.7642211914062 2 429.763438 857.512323 0.5975 0.00025678 -0.23061 -9.9109E-05 0.36689 0.00015767 429.7633938600276 66.718 0.50992 60.542 60.28 60.789 -6.1757 60 28 3 0 0 0 0.26159 2 43332 43332;43455 60.39 14.811 1 48256000 1951 3748 1371 1394 2168;2169 2168 0.07786713830898861 APARLFALL 9 Unmodified _APARLFALL_ 0 0 0 nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4 nc|ENSG00000124145|P31431-2|SDC4 nc|ENSG00000124145|P31431-2|SDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3058166503906 2 486.30547 970.596387 1.0622 0.00051658 0.092179 4.4827E-05 1.1544 0.0005614 486.30545383280884 80.991 0.50078 81.051 80.814 81.315 0.059929 63 19 4 0 0 0 0.022193 2 44702 44702;44816 61.357 25.313 1 65569000 1952 3748 1372 1395 2170;2171 2170 0.10991244927799926 APARLFALL 9 Unmodified _APARLFALL_ 0 0 0 nc|ENSG00000124145|P31431-2|SDC4;ENSG00000124145|ENST00000372733|SDC4 nc|ENSG00000124145|P31431-2|SDC4 nc|ENSG00000124145|P31431-2|SDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3058166503906 2 486.30547 970.596387 0.99115 0.000482 -0.036431 -1.7717E-05 0.95472 0.00046428 486.3054431463366 98.508 0.20834 92.332 92.206 92.414 -6.1757 43 14 4 0 0 0 0.0082281 1 65304 65304 92.822 48.415 1 579330000 1953 3748 1372 1395 2172 2172 0.10991244927799926 APARPQPAY 9 Unmodified _APARPQPAY_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7583923339844 2 485.758884 969.503215 -0.22191 -0.0001078 0.19983 9.7067E-05 -0.022085 -1.0728E-05 485.75875612784745 21.128 0.21648 21.128 21.028 21.244 0 89 36 3 0 0 0 0.2001 2 10633 10633;10730 23.148 0 1 4091100 1954 8404 1373 1396 2173;2174 2173 0.01724320474556862 APARPQPAY 9 Unmodified _APARPQPAY_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.760009765625 2 485.758884 969.503215 0.21715 0.00010548 1.1554 0.00056124 1.3725 0.00066672 485.75957710308126 23.723 0.36448 20.896 20.708 21.073 -2.8273 35 22 3 0 0 0 0.00856 1 12815 12815 100.37 18.758 1 4919000 1955 8404 1373 1396 2175 2175 0.01724320474556862 APARSYVL 8 Unmodified _APARSYVL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENST00000494142.1_1_19:54677740-54682918:-|nuORF ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7501220703125 2 438.750527 875.486502 -0.32363 -0.00014199 -0.13921 -6.1078E-05 -0.46283 -0.00020307 438.7505276077785 34.771 0.22292 34.58 34.477 34.7 -0.19131 14 9 2 0 0 0 0.50364 1 18212 18212 34.402 5.9149 1 2424300 1956 3859 1374 1397 2176 2176 0.04377819588614784 APARSYVL 8 Unmodified _APARSYVL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENST00000494142.1_1_19:54677740-54682918:-|nuORF ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7508544921875 2 438.750527 875.486502 0.6811 0.00029883 -0.14764 -6.4778E-05 0.53346 0.00023405 438.7504746315027 38.438 0.4363 34.069 33.836 34.273 -4.3689 66 27 3 0 0 0 0.31379 2 22567 22567;22699 53.833 15.859 1 36838000 1957 3859 1374 1397 2177;2178 2177 0.04377819588614784 APASFASPAL 10 Unmodified _APASFASPAL_ 0 0 0 REV__ENST00000418664.2_2_6:7542068-7542152:+|nuORF REV__ENST00000418664.2_2_6:7542068-7542152:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7439880371094 2 466.247818 930.481082 1.3806 0.00064371 -1.6007 -0.00074634 -0.22012 -0.00010263 466.24774826885255 64.131 0.86505 57.955 57.45 58.315 -6.1757 95 46 3 0 0 0 0.2829 1 41378 41378 28.487 1.6032 1 88125000 + 1958 26806 1375 1398 2179 2179 0.013060960061352489 APASGPGLSFL 11 Unmodified _APASGPGLSFL_ 0 0 0 ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7750854492188 2 508.7742 1015.53385 0.65262 0.00033204 0.92325 0.00046973 1.5759 0.00080176 508.77472129722315 72.993 0.5149 72.993 72.734 73.249 0 26 24 2 0 0 0 0.6249 1 40627 40627 10.074 0.6908 1 504860 1959 10374 1376 1399 2180 2180 0.02670054068948957 APASISTAAL 10 Unmodified _APASISTAAL_ 0 0 0 nc|ENSG00000183621|Q7Z4V0-3|ZNF438;nc|ENSG00000183621|Q7Z4V0-2|ZNF438;ENSG00000183621|ENST00000436087|ZNF438 nc|ENSG00000183621|Q7Z4V0-3|ZNF438 nc|ENSG00000183621|Q7Z4V0-3|ZNF438 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2529296875 2 451.2531 900.491647 -0.15162 -6.8418E-05 0.15434 6.9645E-05 0.00272 1.2274E-06 451.25312214621505 29.693 0.11398 29.693 29.608 29.722 0 8 5 2 0 0 0 0.063761 1 15389 15389 54.774 3.1437 1 1540900 1960 9168 1377 1400 2181 2181 0.03742078660570769 APASISTAAL 10 Unmodified _APASISTAAL_ 0 0 0 nc|ENSG00000183621|Q7Z4V0-3|ZNF438;nc|ENSG00000183621|Q7Z4V0-2|ZNF438;ENSG00000183621|ENST00000436087|ZNF438 nc|ENSG00000183621|Q7Z4V0-3|ZNF438 nc|ENSG00000183621|Q7Z4V0-3|ZNF438 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 451.2531 900.491647 1.4642 0.00066072 0.36299 0.0001638 1.8272 0.00082452 451.2532991405722 33.787 0.35665 29.802 29.589 29.946 -3.9853 0.05451 8.8996E-05 NaN 54.774 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 6226000 1961 9168 1377 1400 0.03742078660570769 APASRLLAL 9 Unmodified _APASRLLAL_ 0 0 0 ENST00000567120.5_1_16:734232-734409:-|nuORF;ENST00000569441.5_1_16:734052-734319:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000568689.5_1_16:733170-734340:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8 ENST00000567120.5_1_16:734232-734409:-|nuORF ENST00000567120.5_1_16:734232-734409:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2869873046875 2 456.287277 910.560001 -0.011661 -5.3207E-06 -0.60405 -0.00027562 -0.61571 -0.00028094 456.2870317561743 55.762 0.2135 55.693 55.569 55.782 -0.068741 17 10 2 0 0 0 0.076472 1 30314 30314 38.615 5.8291 1 3449000 1962 6826 1378 1401 2182 2182 0.10114368031076992 APASVPHPLL 10 Unmodified _APASVPHPLL_ 0 0 0 ENST00000469300.6_1_2:128400496-128412764:-|nuORF ENST00000469300.6_1_2:128400496-128412764:-|nuORF ENST00000469300.6_1_2:128400496-128412764:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7666625976562 2 501.292559 1000.57057 0.029198 1.4637E-05 -2.8634 -0.0014354 -2.8342 -0.0014207 501.29279679764335 48.957 0.32835 48.585 48.427 48.755 -0.37172 25 16 3 0 0 0 0.22149 1 26293 26293 14.838 0.25658 1 1761900 1963 13831 1379 1402 2183 2183 0.07030350685522535 APASYDET 8 Unmodified _APASYDET_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000542362.1_1_12:133218156-133218763:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.1820983886719 2 427.18234 852.350128 NaN NaN NaN NaN NaN NaN NaN 75.665 1 75.188 74.688 75.688 -0.47714 0 0 0 0.97444 1 41421 41421 0.79363 0 1 1964 8655 1380 1403 2184 2184 -0.0819533943257511 APATAHQRSF 10 Unmodified _APATAHQRSF_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.3365478515625 2 543.277972 1084.54139 0.72965 0.0003964 -1.8277 -0.00099293 -1.098 -0.00059653 543.2771843216409 35.585 0.30564 31.392 31.235 31.541 -4.1928 26 18 2 0 0 0 0.22667 1 20570 20570 3.5965 0 1 8004000 1965 4816 1381 1404 2185 2185 0.002502063892507067 APATQVAQVTL 11 Unmodified _APATQVAQVTL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.8116455078125 2 549.811313 1097.60807 0.59333 0.00032622 -1.0369 -0.00057008 -0.44353 -0.00024386 549.8105506907739 53.14 0.2417 53.14 53.039 53.281 0 18 10 2 0 0 0 0.13335 1 29443 29443 38.615 20.242 1 1735300 1966 16412 1382 1405 2186 2186 0.06317397160478322 APATVGLAF 9 Unmodified _APATVGLAF_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 846.4711303710938 1 846.47198 845.464704 0.036457 3.086E-05 0.43637 0.00036938 0.47283 0.00040024 846.4725930115032 67.611 0.31443 67.129 66.985 67.299 -0.48218 22 13 2 0 0 0 0.0086629 2 36930 36930;37031 101.72 61.273 1 1773600 1967 2133 1383 1406 2187;2188 2187 0.03579014840045147 APAVIHAL 8 Unmodified _APAVIHAL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.24267578125 2 396.242338 790.470124 NaN NaN NaN NaN NaN NaN NaN 48.269 1 43.035 42.535 43.535 -5.2339 0 0 0 0.29204 1 30052 30052 64.081 11.747 1 1968 6480 1384 1407 2189 2189 0.06650738422501945 APAVSKEVT 9 Unmodified _APAVSKEVT_ 0 0 0 REV__ENST00000430357.4_1_22:23980813-23981020:-|nuORF REV__ENST00000430357.4_1_22:23980813-23981020:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2537841796875 2 451.2531 900.491647 1.218 0.00054961 0.75872 0.00034237 1.9767 0.00089198 451.2534701496897 32.337 0.28302 28.48 28.352 28.635 -3.8562 29 16 2 0 0 0 0.14602 1 18453 18453 28.487 0.31361 1 16229000 + 1969 26964 1385 1408 2190 2190 0.03742078660570769 APAWLVFSL 9 Unmodified _APAWLVFSL_ 0 0 0 REV__ENSG00000180720|ENST00000682254|CHRM4 REV__ENSG00000180720|ENST00000682254|CHRM4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7606811523438 2 502.284203 1002.55385 1.1792 0.00059227 2.3217 0.0011662 3.5009 0.0017584 502.28522641876503 61.088 0.20029 54.94 54.778 54.978 -6.1478 14 10 2 0 0 0 0.20528 1 39312 39312 2.0598 0 1 17438000 + 1970 23165 1386 1409 2191 2191 0.05267849799577107 APAWVVCFVT 10 Unmodified _APAWVVCFVT_ 0 0 0 REV__ENST00000445935.5_2_21:47737957-47742843:-|nuORF REV__ENST00000445935.5_2_21:47737957-47742843:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.757080078125 2 546.78097 1091.54739 0.56297 0.00030782 2.5865 0.0014143 3.1495 0.0017221 546.7813215427823 36.898 0.32272 36.898 36.754 37.076 0 38 15 4 0 0 0 0.23117 1 19615 19615 11.64 2.2572 1 7800800 + 1971 27135 1387 1410 2192 2192 0.005275885765513522 APAYQRFHAL 10 Unmodified _APAYQRFHAL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8770141601562 3 391.876969 1172.60908 -0.30511 -0.00011957 0.45699 0.00017908 0.15188 5.9516E-05 391.87730690589007 36.893 0.21991 36.643 36.51 36.729 -0.2497 20 9 3 0 0 0 0.22237 1 19365 19365 32.037 13.316 1 4281400 1972 7618 1388 1411 2193 2193 0.02967656320038259 APAYSRAL 8 Unmodified _APAYSRAL_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7347717285156 2 424.734877 847.455202 -0.60173 -0.00025557 0.25629 0.00010886 -0.34543 -0.00014672 424.73492508733136 28.664 0.20294 28.664 28.558 28.761 0 19 9 3 0 0 0 0.52622 1 14812 14812 32.305 2.0807 1 3288500 1973 2406 1389 1412 2194 2194 0.025372465545160594 APAYSRAL 8 Unmodified _APAYSRAL_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.8880004882812 2 424.734877 847.455202 1.0338 0.00043907 1.8418 0.0007823 2.8756 0.0012214 424.73531516365085 32.009 0.27182 28.313 28.138 28.41 -3.6958 17 14 2 0 0 0 8.7369 1 18185 18185 29.082 4.8716 1 10380000 1974 2406 1389 1412 2195 2195 0.025372465545160594 APCCSCHSEL 10 Unmodified _APCCSCHSEL_ 0 0 0 nc|ENSG00000173264|Q96N19|GPR137;nc|ENSG00000173264|Q96N19-4|GPR137;ENST00000539851.5_1_11:64056528-64056834:+|nuORF nc|ENSG00000173264|Q96N19|GPR137 nc|ENSG00000173264|Q96N19|GPR137 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.1946411132812 2 525.196087 1048.37762 0.38665 0.00020307 -1.6307 -0.00085642 -1.244 -0.00065335 525.1947554831103 65.429 0.47095 65.429 65.247 65.718 0 48 18 3 0 0 0 0.68719 1 36466 36466 4.3292 0.38484 1 1523600 1975 16389 1390 1413 2196 2196 -0.1446321875985177 APCDLLSRVAL 11 Unmodified _APCDLLSRVAL_ 0 0 0 ENST00000399275.6_1_13:37453488-37453731:-|nuORF ENST00000399275.6_1_13:37453488-37453731:-|nuORF ENST00000399275.6_1_13:37453488-37453731:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5498657226562 3 386.549753 1156.62743 1.0137 0.00039184 -0.99717 -0.00038545 0.016524 6.3875E-06 386.5495936087336 28.381 0.37907 25.233 25.022 25.401 -3.1482 41 19 3 0 0 0 0.24216 1 15814 15814 23.964 2.1647 1 15995000 1976 12864 1391 1414 2197 2197 0.05538030179764064 APCFAHAAAI 10 Unmodified _APCFAHAAAI_ 0 0 0 nc|ENSG00000185271|A6NCF5|KLHL33;ENSG00000185271|ENST00000636854|KLHL33 nc|ENSG00000185271|A6NCF5|KLHL33 nc|ENSG00000185271|A6NCF5|KLHL33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2422790527344 2 486.242012 970.469472 NaN NaN NaN NaN NaN NaN NaN 24.558 1 24.558 24.058 25.058 0 0 0 0 0.6668 1 12555 12555 18.135 3.5533 1 1977 9355 1392 1415 2198 2198 -0.016944242888598637 APCFNFFLRH 10 Unmodified _APCFNFFLRH_ 0 0 0 REV__ENST00000463724.1_1_1:74648194-74648635:-|nuORF REV__ENST00000463724.1_1_1:74648194-74648635:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2093811035156 3 417.874571 1250.60188 -0.20392 -8.5211E-05 2.283 0.000954 2.0791 0.00086879 418.2089354131096 21.762 0.35639 21.785 21.626 21.982 0.022894 28 16 2 0 0 0 0.69377 1 11045 11045 1.7423 0.52744 1 850860 + 1978 21666 1393 1416 2199 2199 -0.013393995520573299 APCLFFSF 8 Unmodified _APCLFFSF_ 0 0 0 ENST00000444465.1_1_6:166401068-166401386:-|nuORF ENST00000444465.1_1_6:166401068-166401386:-|nuORF ENST00000444465.1_1_6:166401068-166401386:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2220764160156 2 466.222757 930.430961 NaN NaN NaN NaN NaN NaN NaN 70.629 1 70.151 69.651 70.651 -0.47735 0 0 0 0.95201 1 38642 38642 10.183 1.5901 1 1979 13437 1394 1417 2200 2200 -0.03703729923358878 APCNGGRK 8 Unmodified _APCNGGRK_ 0 0 0 REV__ENSG00000236104|ENST00000431845|ZBTB22 REV__ENSG00000236104|ENST00000431845|ZBTB22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3978271484375 1 802.398832 801.391556 -0.086181 -6.9151E-05 -1.291 -0.0010359 -1.3772 -0.001105 802.3975671469208 62.185 1.1591 62.185 61.641 62.8 0 85 60 2 0 0 0 0.80676 2 34622 34622;34724 2.5775 0.27475 1 4166700 + 1980 24423 1395 1418 2201;2202 2201 -0.017084371542182453 APCNWPNFYPY 11 Unmodified _APCNWPNFYPY_ 0 0 0 REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.8656921386719 3 457.865741 1370.57539 0.74164 0.00033957 -0.92208 -0.00042219 -0.18044 -8.2619E-05 457.8650880934383 43.328 0.21662 38.564 38.477 38.693 -4.7648 24 15 2 0 0 0 0.63851 1 26287 26287 4.7159 2.4632 1 13933000 + 1981 24569 1396 1419 2203 2203 -0.09507133234023968 APCPPLPAF 9 Carbamidomethyl (C) _APC(Carbamidomethyl (C))PPLPAF_ APC(1)PPLPAF APC(67)PPLPAF 0 1 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2470092773438 2 485.246763 968.478974 0.48763 0.00023662 -0.51128 -0.0002481 -0.023649 -1.1476E-05 485.2470084757033 78.758 0.78851 72.583 72.238 73.026 -6.1757 106 46 3 0 0 0 0.016115 4 51533 51374;51395;51533;51668 67.413 30.947 1 82536000 1982 7189 1397 1420 2204;2205;2206;2207 2206 703 -0.006526560033194073 APCPPLPAF 9 Carbamidomethyl (C) _APC(Carbamidomethyl (C))PPLPAF_ APC(1)PPLPAF APC(110)PPLPAF 0 1 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 969.4849853515625 1 969.48625 968.478974 0.19882 0.00019275 -0.3278 -0.0003178 -0.12898 -0.00012504 969.4868451376789 78.793 0.38992 72.618 72.397 72.787 -6.1757 35 23 2 0 0 0 0.0079702 2 51628 51496;51628 109.15 63.404 1 11203000 1983 7189 1397 1420 2208;2209 2209 703 -0.006526560033194073 APCPQPKQL 9 Carbamidomethyl (C) _APC(Carbamidomethyl (C))PQPKQL_ APC(1)PQPKQL APC(57)PQPKQL 0 1 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MSMS AL20221201_MKP_PDAC_01 4 519.77294921875 2 519.773677 1037.5328 NaN NaN NaN NaN NaN NaN NaN 26.977 1 23.94 23.44 24.44 -3.0365 0 0 0 0.050352 1 14912 14912 57.471 26.835 1 1984 5216 1398 1421 2210 2210 535 0.015535164283846825 APDAEWCQQM 10 Unmodified _APDAEWCQQM_ 0 0 0 REV__nc|ENSG00000164078|Q04912-7|MST1R REV__nc|ENSG00000164078|Q04912-7|MST1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8263854980469 3 393.491686 1177.45323 0.76007 0.00029908 -1.5866 -0.00062432 -0.82654 -0.00032524 393.49091865903296 75.416 0.49237 74.939 74.656 75.148 -0.47714 45 26 2 0 0 0 0.70951 1 41193 41193 0.77653 0 1 3934200 + 1985 21862 1399 1422 2211 2211 -0.12839918307918197 APDALKIIT 9 Unmodified _APDALKIIT_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.3052673339844 2 471.286943 940.559333 0.43594 0.00020545 -0.66235 -0.00031216 -0.22641 -0.0001067 471.28674378998926 55.343 0.23177 54.865 54.733 54.964 -0.47798 14 10 2 0 0 0 0.19496 1 30031 30031 13.906 0 1 686100 1986 4953 1400 1423 2212 2212 0.0866752859137705 APDAPLKI 8 Unmodified _APDAPLKI_ 0 0 0 ENSG00000152495|ENST00000282356|CAMK4;ENST00000505763.1_1_5:110693774-110785459:+|nuORF ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 MSMS AL20221201_MKP_PDAC_01 4 412.7471008300781 2 412.747453 823.480354 NaN NaN NaN NaN NaN NaN NaN 82.714 1 76.539 76.039 77.039 -6.1757 0 0 0 0.97444 1 54350 54350 5.2307 0.47466 1 1987 6192 1401 1424 2213 2213 0.06155301357091503 APDEKRSNVRW 11 Unmodified _APDEKRSNVRW_ 0 0 0 ENSG00000108848|ENST00000505658|LUC7L3;nc|ENSG00000108848|O95232-2|LUC7L3 ENSG00000108848|ENST00000505658|LUC7L3 ENSG00000108848|ENST00000505658|LUC7L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2374572753906 3 453.237225 1356.68985 1.2731 0.00057702 -0.28379 -0.00012862 0.98931 0.00044839 453.2370663754509 20.711 0.20748 18.018 17.941 18.148 -2.693 19 14 2 0 0 0 0.62603 1 11065 11065 10.016 5.3003 1 2358000 1988 2614 1402 1425 2214 2214 0.025768925722786662 APDELHYTY 9 Unmodified _APDELHYTY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7481689453125 2 554.750921 1107.48729 0.85899 0.00047652 -0.02483 -1.3775E-05 0.83416 0.00046275 554.7504249512056 38.707 0.32378 38.707 38.556 38.88 0 42 14 4 0 0 0 0.019303 2 20650 20650;20767 64.236 41.5 1 30609000 1989 7093 1403 1426 2215;2216 2215 -0.06215430552970247 APDELHYTY 9 Unmodified _APDELHYTY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.8217163085938 2 554.750921 1107.48729 0.59482 0.00032998 -3.5433 -0.0019657 -2.9485 -0.0016357 554.7496753184555 44.042 0.33608 39.277 39.079 39.415 -4.7648 34 21 2 0 0 0 0.11012 1 26762 26762 36.044 16.605 1 23430000 1990 7093 1403 1426 2217 2217 -0.06215430552970247 APDEPHLWDT 10 Unmodified _APDEPHLWDT_ 0 0 0 REV__nc|ENSG00000087085|P22303-4|ACHE REV__nc|ENSG00000087085|P22303-4|ACHE MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7693481445312 2 590.767103 1179.51965 1.4891 0.00087969 0.093366 5.5157E-05 1.5824 0.00093484 590.7674329090902 47.647 0.47655 42.413 42.123 42.599 -5.2339 48 27 2 0 0 0 0.2178 1 29472 29472 32.305 10.769 1 26263000 + 1991 17775 1404 1427 2218 2218 -0.06292643150004551 APDEPHLWDT 10 Unmodified _APDEPHLWDT_ 0 0 0 REV__nc|ENSG00000087085|P22303-4|ACHE REV__nc|ENSG00000087085|P22303-4|ACHE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 590.767103 1179.51965 0.44672 0.00026391 -0.11968 -7.0702E-05 0.32704 0.0001932 590.7670753081701 42.596 0.4514 42.587 42.467 42.919 -0.0088196 0.086961 -0.00013784 NaN 32.305 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 5069700 + 1992 17775 1404 1427 -0.06292643150004551 APDFSVEQYSK 11 Unmodified _APDFSVEQYSK_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8017578125 2 635.801143 1269.58773 0.054303 3.4526E-05 -0.063341 -4.0273E-05 -0.0090388 -5.7469E-06 635.8012218478691 52.538 0.30013 52.538 52.402 52.702 0 29 13 3 0 0 0 0.42108 1 29076 29076 20.415 7.3721 1 4214500 + 1993 19587 1405 1428 2219 2219 -0.03627818289987772 APDFSVEQYSK 11 Unmodified _APDFSVEQYSK_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.303466796875 2 635.801143 1269.58773 0.11052 7.0271E-05 0.80689 0.00051302 0.91741 0.00058329 635.8013770864223 49.086 0.26273 48.714 48.558 48.82 -0.37172 22 12 2 0 0 0 0.5229 1 26391 26391 15.248 6.5031 1 2151300 + 1994 19587 1405 1428 2220 2220 -0.03627818289987772 APDFSVEQYSK 11 Unmodified _APDFSVEQYSK_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 635.801143 1269.58773 0.42481 0.0002701 2.4361 0.0015489 2.861 0.001819 636.3057439796847 52.881 0.21561 52.818 52.704 52.919 -0.063423 0.10611 0.003198 NaN 20.415 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1115500 + 1995 19587 1405 1428 -0.03627818289987772 APDIFSALVAF 11 Unmodified _APDIFSALVAF_ 0 0 0 ENST00000553238.5_1_12:113745708-113770716:-|nuORF;nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1;ENST00000548477.5_1_12:113758134-113758563:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.8103637695312 2 575.810782 1149.60701 NaN NaN NaN NaN NaN NaN NaN 101.99 1 95.814 95.314 96.314 -6.1757 0 0 0 0.51453 1 68460 68460 24.021 10.115 1 1996 1513 1406 1429 2221 2221 0.038191827915625254 APDKGHQSPS 10 Unmodified _APDKGHQSPS_ 0 0 0 REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF REV__ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2626342773438 2 512.246338 1022.47812 0.4094 0.00020972 -1.2892 -0.00066036 -0.87975 -0.00045065 512.2458185601475 48.037 0.11739 47.685 47.634 47.751 -0.3526 7 5 2 0 0 0 0.22811 1 25792 25792 14.838 0.43289 1 1662300 + 1997 19727 1407 1430 2222 2222 -0.032217791186667455 APDKHHITPLL 11 Unmodified _APDKHHITPLL_ 0 0 0 ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5712280273438 3 414.571545 1240.69281 -0.45252 -0.0001876 0.087964 3.6467E-05 -0.36455 -0.00015113 414.57151478872385 36.453 0.33885 36.204 36.066 36.405 -0.2497 27 15 2 0 0 0 0.14513 1 19118 19118 37.251 15.142 1 8804600 1998 2377 1408 1431 2223 2223 0.08208767697101393 APDKHHITPLL 11 Unmodified _APDKHHITPLL_ 0 0 0 ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 414.571545 1240.69281 0.36922 0.00015307 -0.35173 -0.00014582 0.017491 7.2512E-06 414.57129793994426 36.324 0.18161 36.324 36.249 36.43 0 0.095422 -0.00051998 NaN 37.251 13 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1772700 1999 2377 1408 1431 0.08208767697101393 APDKHHITPLL 11 Unmodified _APDKHHITPLL_ 0 0 0 ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 414.571545 1240.69281 -0.31944 -0.00013243 0.62569 0.00025939 0.30625 0.00012696 414.5717473970672 36.134 0.2185 36.159 36.053 36.272 0.024967 -0.070169 0.00069564 NaN 37.251 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1260800 2000 2377 1408 1431 0.08208767697101393 APDNIIKFY 9 Unmodified _APDNIIKFY_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7874755859375 2 540.78985 1079.56515 -0.38305 -0.00020715 -1.0322 -0.00055818 -1.4152 -0.00076533 540.7888371504671 60.862 0.16203 60.373 60.313 60.475 -0.48932 12 7 2 0 0 0 0.010611 1 33156 33156 78.728 48.092 1 8919600 2001 3229;16326 1409 1432 2224 2224 0.02854627103056373 APDNVLLTL 9 Unmodified _APDNVLLTL_ 0 0 0 ENSG00000181433|ENST00000370709|SAGE1 ENSG00000181433|ENST00000370709|SAGE1 ENSG00000181433|ENST00000370709|SAGE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2774658203125 2 478.276575 954.538597 0.39118 0.00018709 0.35977 0.00017207 0.75096 0.00035916 478.2767863216357 66.301 0.35534 66.301 66.135 66.491 0 29 15 2 0 0 0 0.38785 1 37073 37073 13.042 2.9685 1 2239300 2002 8973 1410 1433 2225 2225 0.0595093821170849 APDPRLAAL 9 Unmodified _APDPRLAAL_ 0 0 0 nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2;nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2696838378906 2 462.269084 922.523616 1.0961 0.00050669 -1.1417 -0.00052776 -0.045586 -2.1073E-05 462.26847816500225 46.004 0.24882 46.004 45.9 46.149 0 19 11 2 0 0 0 0.085319 1 25144 25144 36.506 12.296 1 2925500 2003 4595 1411 1434 2226 2226 0.0592549113438281 APDQPLKAL 9 Unmodified _APDQPLKAL_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7773742675781 2 476.776742 951.538931 -0.35063 -0.00016717 0.68847 0.00032825 0.33784 0.00016107 476.77697712508734 41.233 0.35696 41.233 41.065 41.422 0 41 17 3 0 0 0 0.0082548 1 22193 22193 96.367 50.667 1 11990000 2004 4104 1412 1435 2227 2227 0.06122357931565148 APDRGRWR 8 Unmodified _APDRGRWR_ 0 0 0 REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2713623046875 2 507.273024 1012.5315 -0.21137 -0.00010722 -1.5026 -0.00076222 -1.714 -0.00086944 507.27209599076224 26.548 0.19011 26.548 26.468 26.658 0 12 8 2 0 0 0 0.76266 1 13667 13667 11.64 0.14559 1 578600 + 2005 18967 1413 1436 2228 2228 0.025730631745204846 APDRKRFSL 9 Unmodified _APDRKRFSL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000498376.1_1_3:49758010-49758405:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8777160644531 3 363.876969 1088.60908 NaN NaN NaN NaN NaN NaN NaN 23.991 1 24.013 23.513 24.513 0.021185 0 0 0 0.72888 1 12368 12368 8.4443 0.83535 1 2006 7130 1414 1437 2229 2229 0.06831656320036927 APDRKRFSL 9 Unmodified _APDRKRFSL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000498376.1_1_3:49758010-49758405:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8780212402344 3 363.876969 1088.60908 0.88202 0.00032095 0.41289 0.00015024 1.2949 0.00047119 363.87728266601573 26.23 0.38657 23.279 23.094 23.481 -2.9511 35 21 2 0 0 0 0.40615 1 14368 14368 12.175 3.7304 1 12293000 2007 7130 1414 1437 2230 2230 0.06831656320036927 APDSQRLKL 9 Unmodified _APDSQRLKL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.298828125 2 514.298373 1026.58219 -0.57709 -0.00029679 0.062754 3.2275E-05 -0.51433 -0.00026452 514.2983514862262 27.97 0.19637 27.97 27.804 28.001 0 21 9 3 0 0 0 0.029718 1 14396 14396 55.503 30.103 1 2415700 2008 2543 1415 1438 2231 2231 0.0699654770885445 APDSQRLKL 9 Unmodified _APDSQRLKL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2991943359375 2 514.298373 1026.58219 1.0438 0.00053684 1.0925 0.00056188 2.1363 0.0010987 514.2988065922087 30.57 0.4064 27.073 26.915 27.321 -3.497 31 19 2 0 0 0 0.0032147 2 17229 17229;17340 125.53 66.85 1 30421000 2009 2543 1415 1438 2232;2233 2232 0.0699654770885445 APDSQRLKLL 10 Unmodified _APDSQRLKLL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8958740234375 3 380.896029 1139.66626 0.23979 9.1335E-05 0.059314 2.2593E-05 0.29911 0.00011393 380.89604575311836 41.067 0.32399 40.764 40.622 40.946 -0.30304 42 15 4 0 0 0 0.28721 1 21708 21708 28.234 10.662 1 8081400 2010 2543 1416 1439 2234 2234 0.10201078805766883 APDSSPVQHY 10 Unmodified _APDSSPVQHY_ 0 0 0 REV__ENST00000456494.1_3_X:148730977-148731121:-|nuORF REV__ENST00000456494.1_3_X:148730977-148731121:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.75341796875 2 550.753995 1099.49344 NaN NaN NaN NaN NaN NaN NaN 46.882 1 46.882 46.382 47.382 0 0 0 0 0.91523 1 25643 25643 7.2892 0.56607 1 + 2011 27254 1417 1440 2235 2235 -0.05232912321457661 APDSYLII 8 Unmodified _APDSYLII_ 0 0 0 REV__ENSG00000077616|ENST00000534061|NAALAD2 REV__ENSG00000077616|ENST00000534061|NAALAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.4818725585938 1 891.482211 890.474934 0.051252 4.569E-05 1.075 0.00095836 1.1263 0.001004 891.4831365017203 76.556 0.41834 76.556 76.341 76.759 0 24 16 2 0 0 0 0.55032 1 42512 42512 30.225 5.5509 1 447720 + 2012 17616 1418 1441 2236 2236 0.025315777746413914 APDTMKRYSM 10 Unmodified _APDTMKRYSM_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MSMS AL20221201_MKP_PDAC_01 4 400.5226135253906 3 400.523098 1198.54746 NaN NaN NaN NaN NaN NaN NaN 27.602 1 24.566 24.066 25.066 -3.0365 0 0 0 0.50479 1 15308 15308 18.34 9.3635 1 2013 4959 1419 1442 2237 2237 -0.043867794857987974 APDVARALL 9 Unmodified _APDVARALL_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2768249511719 2 463.276909 924.539266 0.68996 0.00031964 -0.37683 -0.00017458 0.31313 0.00014506 463.27659760524926 52.75 0.18098 52.75 52.617 52.798 0 10 7 2 0 0 0 0.10247 1 29195 29195 32.786 13.529 1 1704300 2014 9631 1420 1443 2238 2238 0.07397777651419801 APDVARALL 9 Unmodified _APDVARALL_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2773742675781 2 463.276909 924.539266 0.21026 9.741E-05 0.17068 7.907E-05 0.38094 0.00017648 463.2768242148164 53.126 0.24785 52.675 52.535 52.783 -0.45173 28 12 3 0 0 0 0.044296 1 28709 28709 47.594 16.958 1 3359900 2015 9631 1420 1443 2239 2239 0.07397777651419801 APDVARALL 9 Unmodified _APDVARALL_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2776184082031 2 463.276909 924.539266 1.4554 0.00067426 -1.0223 -0.00047363 0.43308 0.00020064 463.2762778257573 58.923 0.35493 52.848 52.598 52.953 -6.0745 27 19 2 0 0 0 0.06294 1 37750 37750 41.84 14.956 1 13128000 2016 9631 1420 1443 2240 2240 0.07397777651419801 APDVLTNK 8 Unmodified _APDVLTNK_ 0 0 0 ZC2HC1A|p.G255D|1|0.04|ENSG00000104427|chr8:78715280-78715280|G/A|missense_variant ZC2HC1A|p.G255D|1|0.04|ENSG00000104427|chr8:78715280-78715280|G/A|missense_variant ZC2HC1A|p.G255D|1|0.04|ENSG00000104427|chr8:78715280-78715280|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 857.4758911132812 1 857.472709 856.465432 -0.10411 -8.9273E-05 3.5643 0.0030563 3.4602 0.0029671 857.4760729812964 89.895 0.11951 89.394 89.345 89.464 -0.50171 7 5 2 0 0 0 0.74163 1 49147 49147 13.508 4.9146 1 475890 2017 30209 1421 1444 2241 2241 0.03145809489092244 APDYYEHSI 9 Unmodified _APDYYEHSI_ 0 0 0 REV__nc|ENSG00000067840|Q76G19|PDZD4 REV__nc|ENSG00000067840|Q76G19|PDZD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2839965820312 2 547.743096 1093.47164 0.7189 0.00039377 0.89028 0.00048764 1.6092 0.00088141 547.7432543382587 60.353 0.66256 60.353 59.983 60.646 0 83 29 4 0 0 0 0.19613 1 33538 33538 12.532 7.2347 1 4958800 + 2018 17426 1422 1445 2242 2242 -0.07135717070036662 APEATVRRFL 10 Unmodified _APEATVRRFL_ 0 0 0 nc|ENSG00000165716|Q5VUD6-2|DIPK1B;ENSG00000165716|ENST00000371692|DIPK1B nc|ENSG00000165716|Q5VUD6-2|DIPK1B nc|ENSG00000165716|Q5VUD6-2|DIPK1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.22509765625 3 387.224257 1158.65094 NaN NaN NaN NaN NaN NaN NaN 42.088 1 42.079 41.579 42.579 -0.0088196 0 0 0 0.92825 1 22524 22524 3.5871 1.6807 1 2019 7380 1423 1446 2243 2243 0.07796212008565817 APEDSPHCDL 10 Unmodified _APEDSPHCDL_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;ENSG00000213214|ENST00000378115|ARHGEF35 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2252807617188 2 542.224214 1082.43387 0.45704 0.00024782 0.78309 0.00042461 1.2401 0.00067243 542.2248752216989 82.168 0.32349 81.672 81.471 81.794 -0.4952 21 12 2 0 0 0 0.69064 1 45009 45009 3.9444 1.6417 1 648910 2020 720 1424 1447 2244 2244 -0.10404551327178524 APEEEEEDDS 10 Unmodified _APEEEEEDDS_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5026550292969 3 383.807051 1148.39932 0.61402 0.00023567 -1.6023 -0.00061496 -0.98823 -0.00037929 383.8061461197245 51.327 0.30375 51.327 51.15 51.454 0 34 13 3 0 0 0 0.23895 1 28314 28314 4.1895 1.4543 1 2725700 2021 2747 1425 1448 2245 2245 -0.16894140724934914 APEEHPVLL 9 Unmodified _APEEHPVLL_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.774169921875 2 502.7742 1003.53385 0.63342 0.00031847 -0.30305 -0.00015236 0.33038 0.0001661 502.77396863969415 45.806 0.61124 45.806 45.497 46.108 0 89 30 4 0 0 0 0.026094 3 24904 24904;25026;25146 57.471 28.985 1 361520000 2022 1163;13679;9849 1426 1449 2246;2247;2248 2246 0.032220540689422705 APEEHPVLL 9 Unmodified _APEEHPVLL_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7736206054688 2 502.7742 1003.53385 NaN NaN NaN NaN NaN NaN NaN 45.966 1 45.642 45.142 46.142 -0.32425 0 0 0 0.26667 1 24583 24583 26.884 9.7708 1 2023 1163;13679;9849 1426 1449 2249 2249 0.032220540689422705 APEENIVSRL 10 Unmodified _APEENIVSRL_ 0 0 0 REV__nc|ENSG00000163749|Q5M9N0|CCDC158 REV__nc|ENSG00000163749|Q5M9N0|CCDC158 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3062744140625 2 564.306395 1126.59824 0.54918 0.00030991 -0.72165 -0.00040723 -0.17247 -9.7326E-05 564.3061905538241 45.852 0.25286 45.852 45.704 45.957 0 27 12 3 0 0 0 0.32072 1 25007 25007 26.268 3.5319 1 8443500 + 2024 21811 1427 1450 2250 2250 0.04000209155105949 APEERPAAL 9 Unmodified _APEERPAAL_ 0 0 0 ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2563171386719 2 477.256174 952.497795 -0.32894 -0.00015699 0.034531 1.648E-05 -0.29441 -0.00014051 477.2561836299898 26.318 0.27301 26.318 26.175 26.448 0 30 13 3 0 0 0 0.033587 2 13484 13484;13587 53.404 29.614 1 3382100 2025 2728 1428 1451 2251;2252 2251 0.01964596892071313 APEFAMYY 8 Unmodified _APEFAMYY_ 0 0 0 ENST00000505020.1_1_5:26881247-26890759:-|nuORF;ENSG00000113100|ENST00000231021|CDH9 ENST00000505020.1_1_5:26881247-26890759:-|nuORF ENST00000505020.1_1_5:26881247-26890759:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2147827148438 2 496.215129 990.415705 0.70742 0.00035103 -2.1483 -0.001066 -1.4409 -0.000715 496.2139893666137 62.551 0.39439 62.063 61.831 62.226 -0.48764 27 18 2 0 0 0 0.5953 1 34027 34027 26.341 6.9023 1 2013000 2026 2942 1429 1452 2253 2253 -0.0798864151122416 APEFRRLGL 9 Unmodified _APEFRRLGL_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.54150390625 3 353.541697 1057.60326 0.0030548 1.08E-06 0.19874 7.0264E-05 0.2018 7.1344E-05 353.5417494386446 44.097 0.28112 44.075 43.959 44.241 -0.022064 38 20 2 0 0 0 0.042911 2 23618 23618;23726 36.506 6.6656 1 86824000 2027 8322 1430 1453 2254;2255 2254 0.07676557808372309 APEFRRLGL 9 Unmodified _APEFRRLGL_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8101806640625 2 529.808908 1057.60326 0.11417 6.049E-05 0.33929 0.00017976 0.45346 0.00024025 529.8090528079249 44.16 0.26495 44.138 43.959 44.224 -0.022064 31 19 2 0 0 0 0.0071894 1 23634 23634 111.29 56.513 1 50849000 2028 8322 1430 1453 2256 2256 0.07676557808372309 APEFRRLGL 9 Unmodified _APEFRRLGL_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5416259765625 3 353.541697 1057.60326 1.3411 0.00047413 -0.034887 -1.2334E-05 1.3062 0.0004618 353.541623073274 49 0.38831 43.604 43.407 43.795 -5.3961 65 25 3 0 0 0 0.026094 2 30487 30487;30620 43.772 7.2662 1 128910000 2029 8322 1430 1453 2257;2258 2257 0.07676557808372309 APEFRRLGL 9 Unmodified _APEFRRLGL_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.3106689453125 2 529.808908 1057.60326 0.64735 0.00034297 -0.2473 -0.00013102 0.40004 0.00021195 529.8088117014107 48.996 0.34284 43.6 43.441 43.784 -5.3961 39 22 2 0 0 0 0.0082661 2 30513 30513;30652 92.491 37.718 1 104150000 2030 8322 1430 1453 2259;2260 2259 0.07676557808372309 APEGTTTEISY 11 Unmodified _APEGTTTEISY_ 0 0 0 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7724609375 2 584.772051 1167.52955 0.29885 0.00017476 -3.4185 -0.0019991 -3.1197 -0.0018243 584.7717648728 45.305 0.25496 40.35 40.269 40.524 -4.9549 26 17 2 0 0 0 0.014658 1 27818 27818 88.954 63.555 1 14786000 2031 1180 1431 1454 2261 2261 -0.04751499935264292 APEHPHQLEH 10 Unmodified _APEHPHQLEH_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5288696289062 3 398.859866 1193.55777 -0.47691 -0.00019022 4.4082 0.0017583 3.9313 0.001568 398.8622769420206 20.569 0.27143 20.569 20.441 20.712 0 35 25 2 0 0 0 0.23862 1 10367 10367 1.9064 0 1 1542700 2032 7704 1432 1455 2262 2262 -0.03126712444645818 APEHQLGRF 9 Unmodified _APEHQLGRF_ 0 0 0 REV__ENST00000372189.7_1_9:134453486-134453633:-|nuORF REV__ENST00000372189.7_1_9:134453486-134453633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7755126953125 2 527.775065 1053.53558 0.41723 0.0002202 1.7262 0.00091103 2.1434 0.0011312 527.7759634613689 85.035 0.30325 84.533 84.3 84.604 -0.5015 20 13 2 0 0 0 0.54444 1 46479 46479 4.756 0.42677 1 836360 + 2033 26106 1433 1456 2263 2263 0.010951078775406131 APEHVKGYIY 10 Unmodified _APEHVKGYIY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MSMS AL20221201_MKP_PDAC_01 4 392.8735961914062 3 392.873113 1175.59751 NaN NaN NaN NaN NaN NaN NaN 31.857 1 28.162 27.662 28.662 -3.6958 0 0 0 0.55063 1 18081 18081 20.871 11.327 1 2034 9785 1434 1457 2264 2264 0.01673414506035442 APEILRGEDYG 11 Unmodified _APEILRGEDYG_ 0 0 0 ENSG00000163558|ENST00000295797|PRKCI ENSG00000163558|ENST00000295797|PRKCI ENSG00000163558|ENST00000295797|PRKCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.8025512695312 2 610.30131 1218.58807 0.55834 0.00034075 3.0908 0.0018863 3.6491 0.0022271 610.3036971916833 84.147 0.26922 83.647 83.528 83.797 -0.49961 20 11 2 0 0 0 0.71341 1 46026 46026 2.9952 1.3426 1 591170 2035 7018 1435 1458 2265 2265 -0.012483985701464917 APEKPDTATW 10 Unmodified _APEKPDTATW_ 0 0 0 REV__ENSG00000151360|ENST00000252505|ALLC REV__ENSG00000151360|ENST00000252505|ALLC MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.774658203125 2 558.272021 1114.52949 0.38581 0.00021539 0.68107 0.00038022 1.0669 0.00059561 558.2723196186242 93.238 1.1022 87.062 86.74 87.842 -6.1757 124 72 2 0 0 0 0.33553 1 61505 61505 25.399 2.2509 1 29992000 + 2036 21063 1436 1459 2266 2266 -0.02319455144629501 APEKRAVGP 9 Unmodified _APEKRAVGP_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7679138183594 2 462.766709 923.518865 0.14132 6.54E-05 1.5428 0.00071397 1.6841 0.00077937 462.76750525814714 16.038 0.14088 16.043 15.978 16.119 0.0050564 17 12 2 0 0 0 0.43463 1 8032 8032 10.824 0.75 1 360490 + 2037 19721 1437 1460 2267 2267 0.054046069916125816 APELFRNQAAF 11 Unmodified _APELFRNQAAF_ 0 0 0 ENST00000360760.9_1_2:201171311-201253960:+|nuORF;ENST00000444012.5_2_2:201171311-201236849:+|nuORF ENST00000360760.9_1_2:201171311-201253960:+|nuORF ENST00000360760.9_1_2:201171311-201253960:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8876953125 3 421.887533 1262.64077 -0.084925 -3.5829E-05 0.52234 0.00022037 0.43741 0.00018454 421.8874469304319 41.402 0.16161 41.4 41.261 41.422 -0.0017929 11 7 2 0 0 0 0.67922 1 22103 22103 2.8433 0 1 2098500 2038 12170 1438 1461 2268 2268 0.019956042833428 APELLRALL 9 Unmodified _APELLRALL_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3160400390625 2 498.316035 994.617516 0.43577 0.00021715 -1.4276 -0.00071138 -0.9918 -0.00049423 498.31517017331277 80.566 0.24362 80.624 80.518 80.762 0.057587 14 9 2 0 0 0 0.032796 1 44561 44561 53.833 10.06 1 4650800 2039 1206 1439 1462 2269 2269 0.11999210236660929 APELLRALL 9 Unmodified _APELLRALL_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3163146972656 2 498.316035 994.617516 1.6826 0.00083848 -0.21773 -0.0001085 1.4649 0.00072998 498.31574415219217 98.287 0.13531 92.112 92.027 92.163 -6.1757 15 8 2 0 0 0 0.008513 1 65163 65163 99.755 35.795 1 28365000 2040 1206 1439 1462 2270 2270 0.11999210236660929 APELQRHEL 9 Unmodified _APELQRHEL_ 0 0 0 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.863525390625 3 364.864729 1091.57236 -0.39889 -0.00014554 -1.3112 -0.00047841 -1.7101 -0.00062395 364.86427520169497 24.697 0.1417 24.697 24.66 24.802 0 13 6 3 0 0 0 0.40476 1 12652 12652 16.566 6.4153 1 965560 2041 9340 1440 1463 2271 2271 0.03023359703456663 APELQRHEL 9 Unmodified _APELQRHEL_ 0 0 0 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 364.864729 1091.57236 1.0932 0.00039886 -0.54037 -0.00019716 0.55281 0.0002017 364.8643646521332 27.594 0.26359 24.557 24.435 24.699 -3.0365 -0.069726 0.00039229 NaN 16.566 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 8328000 2042 9340 1440 1463 0.03023359703456663 APEPEEVVE 9 Unmodified _APEPEEVVE_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.737548828125 2 499.73748 997.460406 -0.32433 -0.00016208 1.2876 0.00064345 0.96324 0.00048137 499.7380959140065 33.951 0.14775 33.951 33.822 33.97 0 11 6 2 0 0 0 0.32871 1 17836 17836 15.847 2.8047 1 1939900 + 2043 21279 1441 1464 2272 2272 -0.038425391641794704 APEPEEVVE 9 Unmodified _APEPEEVVE_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7088623046875 2 499.73748 997.460406 -0.32433 -0.00016208 1.2876 0.00064345 0.96324 0.00048137 499.7380959140065 33.951 0.14775 33.951 33.822 33.97 0 11 6 2 0 0 0 0.19891 1 17800 17800 11.64 3.7301 1 1939900 + 2044 21279 1441 1464 2273 2273 -0.038425391641794704 APERKKGSSV 10 Unmodified _APERKKGSSV_ 0 0 0 ENST00000259605.10_1_9:36369881-36375960:-|nuORF ENST00000259605.10_1_9:36369881-36375960:-|nuORF ENST00000259605.10_1_9:36369881-36375960:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5414733886719 3 353.536612 1057.58801 NaN NaN NaN NaN NaN NaN NaN 44.549 1 44.233 43.733 44.733 -0.31585 0 0 0 0.68942 1 23772 23772 10.899 2.4547 1 2045 11217 1442 1465 2274 2274 0.06151646220519069 APESRDPAGGT 11 Unmodified _APESRDPAGGT_ 0 0 0 REV__ENST00000503023.1_1_5:14664860-14664938:+|nuORF REV__ENST00000503023.1_1_5:14664860-14664938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1672973632812 3 353.168477 1056.4836 0.33934 0.00011984 -1.3498 -0.0004767 -1.0104 -0.00035686 353.1680220206996 67.104 0.45382 66.621 66.459 66.913 -0.48323 29 20 2 0 0 0 0.71036 1 36639 36639 1.3296 0 1 2224700 + 2046 28034 1443 1466 2275 2275 -0.04238100326847416 APETDTSPSL 10 Unmodified _APETDTSPSL_ 0 0 0 ENSG00000102738|ENST00000323563|MRPS31 ENSG00000102738|ENST00000323563|MRPS31 ENSG00000102738|ENST00000323563|MRPS31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7418518066406 2 509.240386 1016.46622 -0.025815 -1.3146E-05 1.4655 0.00074629 1.4397 0.00073315 509.7413994267377 70.511 0.13789 70.034 69.956 70.094 -0.47735 25 17 2 0 0 0 0.35903 1 38573 38573 24.021 4.7636 1 4791400 2047 2060 1444 1467 2276 2276 -0.041354406525101695 APETIARGTR 10 Unmodified _APETIARGTR_ 0 0 0 ENST00000541346.1_1_12:6858974-6859115:-|nuORF ENST00000541346.1_1_12:6858974-6859115:-|nuORF ENST00000541346.1_1_12:6858974-6859115:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7994995117188 2 536.298904 1070.58326 0.19474 0.00010444 -1.1852 -0.00063562 -0.99046 -0.00053118 536.2982501427246 79.656 0.29951 79.711 79.577 79.876 0.05497 33 11 4 0 0 0 0.63399 1 44000 44000 9.3831 0.63772 1 7341800 2048 15044 1445 1468 2277 2277 0.050787620777555276 APEVSQHVY 9 Unmodified _APEVSQHVY_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000482818.1_1_22:29724812-29725148:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1 nc|ENSG00000100280|Q10567-4|AP1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2523193359375 2 515.253631 1028.49271 -0.42417 -0.00021855 0.4606 0.00023733 0.036433 1.8772E-05 515.2538395650707 26.962 0.2942 26.962 26.761 27.055 0 21 13 2 0 0 0 0.047788 1 13851 13851 45.7 30.861 1 2803800 2049 1783 1446 1469 2278 2278 -0.020397069705268223 APFAASTR 8 Unmodified _APFAASTR_ 0 0 0 REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1 REV__nc|ENSG00000185684|Q6ZTU2-4|EP400P1 MSMS AL20221201_MKP_PDAC_01 4 410.7185974121094 2 410.719227 819.423902 NaN NaN NaN NaN NaN NaN NaN 18.847 1 16.226 15.726 16.726 -2.6215 0 0 0 0.94494 1 9950 9950 11.64 3.047 1 + 2050 29854 1447 1470 2279 2279 0.006966735204287033 APFAVGAGVYH 11 Unmodified _APFAVGAGVYH_ 0 0 0 REV__ENST00000431593.5_1_2:85826201-85828246:-|nuORF REV__ENST00000431593.5_1_2:85826201-85828246:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.5224914550781 3 363.522303 1087.54508 -0.19518 -7.0951E-05 -0.12519 -4.5509E-05 -0.32037 -0.00011646 363.52228211608997 35.802 0.58524 35.827 35.602 36.187 0.024971 57 27 3 0 0 0 0.67371 1 18897 18897 3.0723 0.33707 1 6158900 + 2051 22354 1448 1471 2280 2280 0.00480876163078392 APFCQGHEM 9 Carbamidomethyl (C),Oxidation (M) _APFC(Carbamidomethyl (C))QGHEM(Oxidation (M))_ APFC(1)QGHEM APFCQGHEM(1) APFC(89)QGHEM APFCQGHEM(89) 0 1 1 ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7155151367188 2 546.715501 1091.41645 1.0577 0.00057824 -0.34459 -0.00018839 0.71306 0.00038984 546.7155203120111 20.26 0.41702 17.567 17.445 17.862 -2.693 57 26 3 0 0 0 0.0086722 2 10811 10811;10920 88.954 62.686 1 4567300 2052 3463 1449 1472 2281;2282 2281 349 617 -0.12560170133815518 APFCQGHEM 9 Carbamidomethyl (C) _APFC(Carbamidomethyl (C))QGHEM_ APFC(1)QGHEM APFC(110)QGHEM 0 1 0 ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 MSMS AL20221201_MKP_PDAC_01 4 538.718505859375 2 538.718044 1075.42154 NaN NaN NaN NaN NaN NaN NaN 30.679 1 27.182 26.682 27.682 -3.497 0 0 0 0.017897 1 17334 17334 111.29 80.019 1 2053 3463 1449 1473 2283 2283 349 -0.1131586627118395 APFDGSRLVF 10 Unmodified _APFDGSRLVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7936401367188 2 554.792924 1107.57129 0.71532 0.00039686 0.76177 0.00042262 1.4771 0.00081948 554.7932355716538 67.503 0.57963 67.021 66.695 67.275 -0.48218 74 25 4 0 0 0 0.1887 1 36905 36905 40.239 11.158 1 13241000 2054 2101 1450 1474 2284 2284 0.021811453345662812 APFDGSRLVF 10 Unmodified _APFDGSRLVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7938842773438 2 554.792924 1107.57129 0.79875 0.00044314 0.61096 0.00033895 1.4097 0.0007821 554.7933245581763 66.978 0.50506 66.996 66.713 67.218 0.018028 71 24 4 0 0 0 0.033027 1 36771 36771 75.571 35.613 1 66986000 2055 2101 1450 1474 2285 2285 0.021811453345662812 APFDGSRLVF 10 Unmodified _APFDGSRLVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7913818359375 2 554.792924 1107.57129 1.0664 0.00059163 1.3814 0.00076641 2.4478 0.001358 554.7925025662199 72.064 0.84895 65.888 65.619 66.468 -6.1757 64 44 2 0 0 0 0.075273 1 47192 47192 59.052 22.925 1 84796000 2056 2101 1450 1474 2286 2286 0.021811453345662812 APFDGSRLVF 10 Unmodified _APFDGSRLVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7940673828125 2 554.792924 1107.57129 1.0741 0.00059589 0.77627 0.00043067 1.8504 0.0010266 554.793367659186 74.568 0.8069 68.392 68.064 68.871 -6.1757 72 42 2 0 0 0 0.075273 2 48751 48615;48751 59.052 15.386 1 18805000 2057 2101 1450 1474 2287;2288 2288 0.021811453345662812 APFDKTANITF 11 Unmodified _APFDKTANITF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000586690.1_1_19:55748009-55750864:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8173828125 2 612.816596 1223.61864 0.55849 0.00034225 -0.61364 -0.00037605 -0.055154 -3.3799E-05 612.8161524693847 57.453 0.37433 56.963 56.773 57.147 -0.48974 57 17 4 0 0 0 0.0008837 2 31174 31174;31276 84.522 58.254 1 30632000 2058 2273 1451 1475 2289;2290 2289 0.015773798148757123 APFDKTANITF 11 Unmodified _APFDKTANITF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000586690.1_1_19:55748009-55750864:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.817626953125 2 612.816596 1223.61864 0.99031 0.00060688 2.9368 0.0017997 3.9271 0.0024066 612.8171932929763 57.1 0.26195 57.034 56.879 57.14 -0.066036 33 12 4 0 0 0 2.0147E-05 1 31052 31052 93.938 61.152 1 7927100 2059 2273 1451 1475 2291 2291 0.015773798148757123 APFDKTANITF 11 Unmodified _APFDKTANITF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000586690.1_1_19:55748009-55750864:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8172607421875 2 612.816596 1223.61864 0.98338 0.00060263 0.15483 9.4884E-05 1.1382 0.00069751 612.8166806963426 63.632 0.82209 57.456 57 57.822 -6.1757 125 46 4 0 0 0 0.0071133 3 41244 41119;41244;41377 71.708 47.687 1 99698000 2060 2273 1451 1475 2292;2293;2294 2293 0.015773798148757123 APFDRHHV 8 Unmodified _APFDRHHV_ 0 0 0 ENST00000590854.5_3_18:43431531-43431615:-|nuORF ENST00000590854.5_3_18:43431531-43431615:-|nuORF ENST00000590854.5_3_18:43431531-43431615:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7500305175781 2 489.74885 977.483148 0.89958 0.00044057 1.3268 0.00064981 2.2264 0.0010904 489.74945393162517 75.397 0.34502 74.92 74.781 75.126 -0.47714 31 19 2 0 0 0 0.6895 1 41362 41362 18.135 0 1 1762600 2061 15690 1452 1476 2295 2295 -0.006494304653983818 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8748168945312 3 378.540245 1132.59891 -0.83485 -0.00031602 0.96045 0.00036357 0.1256 4.7543E-05 378.8749264876009 30.314 0.18024 30.314 30.222 30.402 0 16 8 2 0 0 0 0.52097 1 15759 15759 9.7643 2.2872 1 2111000 2062 4621 1453 1477 2296 2296 0.03791048594803215 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5407409667969 3 378.540245 1132.59891 0.61203 0.00023168 0.90001 0.00034069 1.512 0.00057237 378.54065469412643 30.325 0.33088 30.245 30.056 30.387 -0.080431 32 12 4 0 0 0 0.1899 1 15707 15707 24.957 7.3852 1 14594000 2063 4621 1453 1477 2297 2297 0.03791048594803215 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.30810546875 2 567.306729 1132.59891 0.77527 0.00043981 1.0483 0.00059473 1.8236 0.0010345 567.3077672329738 30.324 0.20477 30.244 30.128 30.333 -0.080429 17 7 3 0 0 0 0.54684 1 15746 15746 13.906 6.6168 1 2624800 2064 4621 1453 1477 2298 2298 0.03791048594803215 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5404663085938 3 378.540245 1132.59891 -0.060845 -2.3032E-05 1.6033 0.00060692 1.5425 0.00058389 378.54098420987935 30.066 0.25996 30.096 29.995 30.255 0.030104 24 10 3 0 0 0 0.48505 1 15721 15721 10.899 2.1472 1 1892600 2065 4621 1453 1477 2299 2299 0.03791048594803215 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.87548828125 3 378.540245 1132.59891 1.4299 0.00054127 -0.40986 -0.00015515 1.02 0.00038612 378.5400585624777 34.27 0.44613 30.284 30.065 30.511 -3.9853 48 25 2 0 0 0 0.10424 2 19654 19654;19776 53.317 32.446 1 75676000 2066 4621 1453 1477 2300;2301 2300 0.03791048594803215 APFDRRATSL 10 Unmodified _APFDRRATSL_ 0 0 0 nc|ENSG00000134574|Q92466-3|DDB2;nc|ENSG00000134574|Q92466-2|DDB2;nc|ENSG00000134574|Q92466-5|DDB2;ENSG00000134574|ENST00000256996|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 nc|ENSG00000134574|Q92466-3|DDB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.76611328125 2 567.306729 1132.59891 1.1052 0.00062698 0.91181 0.00051728 2.017 0.0011443 567.3074972350857 34.24 0.29668 30.255 30.115 30.411 -3.9853 28 16 2 0 0 0 0.1579 1 19721 19721 32.786 12.371 1 16193000 2067 4621 1453 1477 2302 2302 0.03791048594803215 APFDRSGPNF 10 Unmodified _APFDRSGPNF_ 0 0 0 REV__nc|ENSG00000243480|P04746-2|AMY2A REV__nc|ENSG00000243480|P04746-2|AMY2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2638549804688 2 554.26453 1106.51451 NaN NaN NaN NaN NaN NaN NaN 86.36 1 85.856 85.356 86.356 -0.50318 0 0 0 0.90096 1 47253 47253 7.9102 0 1 + 2068 22823 1454 1478 2303 2303 -0.03448902221953176 APFDWKILY 9 Unmodified _APFDWKILY_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8086547851562 2 576.808042 1151.60153 0.5775 0.00033311 -0.066283 -3.8232E-05 0.51122 0.00029487 576.8080269788047 83.299 0.30941 83.362 83.182 83.491 0.063171 18 11 2 0 0 0 0.024507 1 46068 46068 63.961 18.261 1 6555600 2069 5237 1455 1479 2304 2304 0.03179503999763256 APFDWKILY 9 Unmodified _APFDWKILY_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.80810546875 2 576.808042 1151.60153 1.2672 0.00073096 0.62803 0.00036225 1.8953 0.0010932 576.8084651296888 97.871 0.24489 91.695 91.587 91.831 -6.1757 26 15 2 0 0 0 0.016448 1 64842 64842 63.961 20.188 1 51405000 2070 5237 1455 1479 2305 2305 0.03179503999763256 APFEADLGGN 10 Unmodified _APFEADLGGN_ 0 0 0 REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7306518554688 2 495.729989 989.445425 0.62442 0.00030954 0.67748 0.00033585 1.3019 0.00064539 495.7301940125631 73.377 0.3413 73.377 73.249 73.591 0 42 18 3 0 0 0 0.40136 1 40825 40825 21.537 3.3906 1 4110700 + 2071 25188 1456 1480 2306 2306 -0.04971986241525883 APFEADLGGN 10 Unmodified _APFEADLGGN_ 0 0 0 REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7312316894531 2 495.729989 989.445425 0.78234 0.00038783 1.2045 0.00059712 1.9869 0.00098495 495.7303905140813 73.9 0.40482 73.424 73.208 73.613 -0.47588 52 19 3 0 0 0 0.20962 2 40375 40375;40480 32.786 3.7041 1 16432000 + 2072 25188 1456 1480 2307;2308 2307 -0.04971986241525883 APFEADLGGN 10 Unmodified _APFEADLGGN_ 0 0 0 REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF REV__ENST00000280333.9_1_10:128594024-128594090:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.731201171875 2 495.729989 989.445425 1.148 0.0005691 0.36416 0.00018052 1.5122 0.00074962 495.73018938188204 81.284 0.46864 75.108 74.892 75.361 -6.1757 47 26 2 0 0 0 0.13297 1 53284 53284 41.956 5.8285 1 26296000 + 2073 25188 1456 1480 2309 2309 -0.04971986241525883 APFEEQENY 9 Unmodified _APFEEQENY_ 0 0 0 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7379760742188 2 563.738011 1125.46147 0.39667 0.00022362 1.8933 0.0010673 2.29 0.001291 563.7385205553502 37.158 0.28148 37.158 36.977 37.259 0 32 13 3 0 0 0 0.031062 1 19717 19717 54.774 35.517 1 3786200 2074 10170 1457 1481 2310 2310 -0.09624324795277062 APFEGLGKVY 10 Unmodified _APFEGLGKVY_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7890014648438 2 540.78985 1079.56515 -0.10621 -5.7435E-05 0.21392 0.00011569 0.10771 5.8251E-05 540.7897345209967 54.718 0.23611 54.251 54.124 54.36 -0.46664 27 11 3 0 0 0 0.051223 1 29662 29662 57.722 24.936 1 9021100 2075 319 1458 1482 2311 2311 0.028546271030336356 APFEGLGKVY 10 Unmodified _APFEGLGKVY_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MSMS AL20221201_MKP_PDAC_01 4 540.7904663085938 2 540.78985 1079.56515 NaN NaN NaN NaN NaN NaN NaN 60.661 1 54.513 54.013 55.013 -6.1478 0 0 0 0.19159 1 39042 39042 43.772 15.286 1 2076 319 1458 1482 2312 2312 0.028546271030336356 APFEGLGKVY 10 Unmodified _APFEGLGKVY_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.78985 1079.56515 0.052128 2.819E-05 0.86636 0.00046852 0.91849 0.00049671 540.7900591483907 54.32 0.078228 54.253 54.202 54.28 -0.066936 0.00080649 0.0004935 NaN 57.722 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1354000 2077 319 1458 1482 0.028546271030336356 APFEPLASGIL 11 Unmodified _APFEPLASGIL_ 0 0 0 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8111572265625 2 557.810782 1113.60701 0.63124 0.00035211 0.63072 0.00035182 1.262 0.00070394 557.8107960406511 91.283 0.37734 90.788 90.586 90.963 -0.49457 40 16 3 0 0 0 0.48615 1 49866 49866 17.113 3.2068 1 1427200 2078 2032 1459 1483 2313 2313 0.0547518279158794 APFEQAGQKY 10 Unmodified _APFEQAGQKY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7803955078125 2 569.780013 1137.54547 -0.072507 -4.1313E-05 -0.37872 -0.00021579 -0.45123 -0.0002571 569.7803832984431 29.228 0.40709 29.228 29.082 29.489 0 74 19 5 0 0 0 0.029039 2 15094 15094;15193 87.258 65.512 1 28026000 2079 8657 1460 1484 2314;2315 2314 -0.017797489077111095 APFEQAGQKY 10 Unmodified _APFEQAGQKY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7802734375 2 569.780013 1137.54547 0.60501 0.00034472 0.31516 0.00017957 0.92017 0.00052429 569.7803113368076 32.931 0.44346 29.074 28.715 29.158 -3.8562 48 24 3 0 0 0 0.0024136 2 18883 18748;18883 132.38 96.335 1 51441000 2080 8657 1460 1484 2316;2317 2317 -0.017797489077111095 APFEQAGQKY 10 Unmodified _APFEQAGQKY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.780013 1137.54547 0.14629 8.3355E-05 0.041926 2.3888E-05 0.18822 0.00010724 570.2802881050859 29.016 0.11358 29.046 28.988 29.102 0.030106 -0.070302 8.7128E-05 NaN 132.38 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 743050 2081 8657 1460 1484 -0.017797489077111095 APFFGIRDQI 10 Unmodified _APFFGIRDQI_ 0 0 0 REV__ENSG00000144681|ENST00000273183|STAC REV__ENSG00000144681|ENST00000273183|STAC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5437927246094 3 388.545108 1162.61349 -0.37363 -0.00014517 -3.1898 -0.0012394 -3.5635 -0.0013846 388.54425648353487 23.801 0.15865 23.801 23.714 23.873 0 13 7 2 0 0 0 0.71042 1 12160 12160 1.7423 0.089654 1 420560 + 2082 20726 1461 1485 2318 2318 0.03869120742933774 APFGALGVSVI 11 Unmodified _APFGALGVSVI_ 0 0 0 ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF ENST00000374825.8_1_6:32948646-32949051:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8026733398438 2 515.800217 1029.58588 0.61713 0.00031832 1.7273 0.00089092 2.3444 0.0012092 515.8014697031564 56.867 0.58266 50.89 50.649 51.232 -5.9769 67 34 2 0 0 0 0.072482 1 36370 36370 46.021 2.1627 1 54532000 2083 12458 1462 1486 2319 2319 0.07227217482704873 APFGMEAEY 9 Oxidation (M) _APFGM(Oxidation (M))EAEY_ APFGM(1)EAEY APFGM(67)EAEY 0 0 1 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7124633789062 2 515.71295 1029.41135 0.23101 0.00011914 -1.1096 -0.00057224 -0.8786 -0.0004531 515.7124067926832 42.15 0.38737 42.15 41.975 42.362 0 46 19 3 0 0 0 0.016494 1 22751 22751 67.035 28.884 1 32727000 2084 741 1463 1487 2320 2320 115 -0.10218150724790576 APFGMEAEY 9 Unmodified _APFGMEAEY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7158508300781 2 507.715493 1013.41643 1.0654 0.00054095 -0.074838 -3.7996E-05 0.99061 0.00050295 507.71538704513756 63.732 0.44774 57.556 57.355 57.802 -6.1757 39 24 2 0 0 0 0.045537 1 41172 41172 46.921 16.696 1 28474000 2085 741 1463 1488 2321 2321 -0.08973846862181745 APFGNFPHY 9 Unmodified _APFGNFPHY_ 0 0 0 ENST00000550861.1_1_12:50236507-50236870:-|nuORF;ENSG00000186666|ENST00000333924|BCDIN3D ENST00000550861.1_1_12:50236507-50236870:-|nuORF ENST00000550861.1_1_12:50236507-50236870:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2435302734375 2 525.245609 1048.47667 0.14787 7.767E-05 0.024855 1.3055E-05 0.17273 9.0725E-05 525.2454172044045 55.107 0.5241 54.629 54.25 54.774 -0.47798 30 25 3 0 0 0 0.078417 1 29888 29888 38.151 25.62 1 1247300 2086 9497 1464 1489 2322 2322 -0.04563368416779667 APFGNFPHY 9 Unmodified _APFGNFPHY_ 0 0 0 ENST00000550861.1_1_12:50236507-50236870:-|nuORF;ENSG00000186666|ENST00000333924|BCDIN3D ENST00000550861.1_1_12:50236507-50236870:-|nuORF ENST00000550861.1_1_12:50236507-50236870:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2453002929688 2 525.245609 1048.47667 0.30083 0.00015801 -0.058065 -3.0498E-05 0.24277 0.00012751 525.2456463783569 54.817 0.23854 54.75 54.622 54.861 -0.066936 22 11 3 0 0 0 0.078417 1 29751 29751 38.151 22.304 1 2416500 2087 9497 1464 1489 2323 2323 -0.04563368416779667 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2248229980469 3 411.224257 1230.65094 0.45246 0.00018606 0.01735 7.1348E-06 0.46981 0.0001932 411.224250508895 46.144 0.38602 46.116 45.905 46.291 -0.028015 67 17 5 0 0 0 0.078742 2 24760 24760;24864 44.945 25.801 1 285960000 2088 6242 1465 1490 2324;2325 2324 0.04484212008560462 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8362426757812 2 616.332747 1230.65094 0.89325 0.00055054 -0.36801 -0.00022682 0.52523 0.00032372 616.3324351057034 46.128 0.28081 46.1 45.948 46.229 -0.028011 37 12 4 0 0 0 0.0015998 1 24790 24790 110.55 85.153 1 22669000 2089 6242 1465 1490 2326 2326 0.04484212008560462 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2254943847656 3 411.224257 1230.65094 1.05 0.00043178 -0.24986 -0.00010275 0.80013 0.00032903 411.2241533387592 51.356 0.49692 45.707 45.43 45.927 -5.649 77 30 3 0 0 0 0.052718 2 32196 32196;32328 44.945 35.701 1 327330000 2090 6242 1465 1490 2327;2328 2327 0.04484212008560462 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3318481445312 2 616.332747 1230.65094 0.74174 0.00045716 -0.090132 -5.5551E-05 0.65161 0.00040161 616.3328608356678 51.342 0.32164 45.693 45.511 45.833 -5.649 44 19 3 0 0 0 5.9542E-11 1 32236 32236 160.69 124.18 1 104860000 2091 6242 1465 1490 2329 2329 0.04484212008560462 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2249145507812 3 411.224257 1230.65094 1.1538 0.00047448 -0.16845 -6.9273E-05 0.98538 0.00040521 411.22425913897484 61.774 0.37472 55.598 55.367 55.741 -6.1757 25 19 2 0 0 0 0.078742 1 39841 39841 38.559 32.691 1 14303000 2092 6242 1465 1490 2330 2330 0.04484212008560462 APFHQLRISY 10 Unmodified _APFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MSMS AL20221201_MKP_PDAC_01 4 411.2240295410156 3 411.224257 1230.65094 NaN NaN NaN NaN NaN NaN NaN 60.549 1 54.402 53.902 54.902 -6.1478 0 0 0 0.29999 1 38963 38963 27.129 18.377 1 2093 6242 1465 1490 2331 2331 0.04484212008560462 APFHRAGM 8 Unmodified _APFHRAGM_ 0 0 0 PALB2|p.D595A|1|0.08|ENSG00000083093|chr16:23630370-23630370|T/G|missense_variant PALB2|p.D595A|1|0.08|ENSG00000083093|chr16:23630370-23630370|T/G|missense_variant PALB2|p.D595A|1|0.08|ENSG00000083093|chr16:23630370-23630370|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7221374511719 2 443.721247 885.427941 NaN NaN NaN NaN NaN NaN NaN 51.727 1 51.294 50.794 51.794 -0.43367 0 0 0 0.94061 1 27907 27907 12.532 0.89125 1 2094 16681 1466 1491 2332 2332 -0.01935560257504676 APFHVVITSY 10 Unmodified _APFHVVITSY_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.30126953125 2 567.303124 1132.5917 0.48122 0.000273 -2.0187 -0.0011452 -1.5375 -0.00087224 567.3020086251721 59.458 0.29642 58.968 58.814 59.11 -0.49079 33 13 3 0 0 0 0.081241 1 32319 32319 50.855 30.401 1 5008200 2095 4098 1467 1492 2333 2333 0.030703159943641367 APFHVVITSY 10 Unmodified _APFHVVITSY_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3038330078125 2 567.303124 1132.5917 0.62812 0.00035634 0.69492 0.00039423 1.323 0.00075056 567.3028846557753 59.019 0.49814 58.958 58.607 59.105 -0.060719 48 24 3 0 0 0 0.18088 1 32135 32135 36.044 25.22 1 12124000 2096 4098 1467 1492 2334 2334 0.030703159943641367 APFIKDCIP 9 Unmodified _APFIKDCIP_ 0 0 0 REV__ENST00000509784.1_1_17:46933948-46940364:+|nuORF REV__ENST00000509784.1_1_17:46933948-46940364:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7921752929688 2 502.267696 1002.52084 0.2134 0.00010719 1.9573 0.00098311 2.1707 0.0010903 502.768758976738 23.167 0.18967 20.389 20.336 20.526 -2.7784 31 21 2 0 0 0 0.17275 1 12543 12543 21.747 13.153 1 11291000 + 2097 20160 1468 1493 2335 2335 0.019678996852007913 APFIVRLALVP 11 Unmodified _APFIVRLALVP_ 0 0 0 REV__nc|ENSG00000130270|O60423-3|ATP8B3 REV__nc|ENSG00000130270|O60423-3|ATP8B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2570495605469 3 399.256898 1194.74886 NaN NaN NaN NaN NaN NaN NaN 35.563 1 35.563 35.063 36.063 0 0 0 0 0.93923 1 18810 18810 3.0723 1.1659 1 + 2098 19710 1469 1494 2336 2336 0.15928020604542326 APFLRIAF 8 Unmodified _APFLRIAF_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7798767089844 2 467.779088 933.543623 1.2361 0.00057821 -0.057346 -2.6825E-05 1.1787 0.00055139 467.77896044286547 96.762 0.22102 90.586 90.472 90.693 -6.1757 20 12 2 0 0 0 0.26159 1 64129 64129 60.39 40.951 1 11518000 2099 7098 1470 1495 2337 2337 0.07419286864967489 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.80322265625 2 529.803291 1057.59203 0.27793 0.00014725 0.62988 0.00033371 0.90781 0.00048096 529.8036531073528 61.987 0.20803 61.987 61.864 62.072 0 15 8 2 0 0 0 0.05483 1 34557 34557 43.772 10.987 1 1391700 2100 3829 1471 1496 2338 2338 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.8035888671875 2 529.803291 1057.59203 0.62522 0.00033124 0.06845 3.6265E-05 0.69367 0.00036751 529.8030929400635 62.412 0.41752 61.924 61.681 62.099 -0.48764 72 19 5 0 0 0 0.0090524 2 34032 33924;34032 85.642 43.802 1 75837000 2101 3829 1471 1496 2339;2340 2340 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8028564453125 2 529.803291 1057.59203 0.28107 0.00014891 0.46858 0.00024825 0.74964 0.00039716 529.8033157816653 61.985 0.35176 61.952 61.808 62.16 -0.032787 57 17 4 0 0 0 0.017075 1 33808 33808 66.457 32.055 1 43350000 2102 3829 1471 1496 2341 2341 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8033447265625 2 529.803291 1057.59203 0.62972 0.00033363 -0.0023289 -1.2339E-06 0.62739 0.00033239 529.803163972392 67.656 0.75905 61.48 61.181 61.94 -6.1757 74 43 3 0 0 0 0.017075 1 44042 44042 66.457 26.507 1 90031000 2103 3829 1471 1496 2342 2342 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8037109375 2 529.803291 1057.59203 0.71117 0.00037678 0.27987 0.00014827 0.99103 0.00052505 529.8028217865501 69.849 0.40071 63.673 63.394 63.795 -6.1757 28 21 2 0 0 0 0.0086904 1 45641 45641 107.19 57.254 1 27809000 2104 3829 1471 1496 2343 2343 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8041381835938 2 529.803291 1057.59203 1.1326 0.00060004 -0.27715 -0.00014684 0.85542 0.00045321 529.8033084709149 71.272 0.90434 65.097 64.577 65.481 -6.1757 65 45 2 0 0 0 0.0082353 3 46358 46358;46533;46656 96.111 43.843 1 37366000 2105 3829 1471 1496 2344;2345;2346 2344 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 529.803466796875 2 529.803291 1057.59203 NaN NaN NaN NaN NaN NaN NaN 70.277 1 64.101 63.601 64.601 -6.1757 0 0 0 0.027645 1 45918 45918 69.105 8.7154 1 2106 3829 1471 1496 2347 2347 0.06553735714237519 APFLRNVEL 9 Unmodified _APFLRNVEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 529.8048706054688 2 529.803291 1057.59203 NaN NaN NaN NaN NaN NaN NaN 70.622 1 64.446 63.946 64.946 -6.1757 0 0 0 0.02218 1 46158 46158 75.761 31.354 1 2107 3829 1471 1496 2348 2348 0.06553735714237519 APFLTRSSPSW 11 Unmodified _APFLTRSSPSW_ 0 0 0 ENST00000511918.5_1_5:90609002-90610084:-|nuORF ENST00000511918.5_1_5:90609002-90610084:-|nuORF ENST00000511918.5_1_5:90609002-90610084:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8863830566406 3 416.8839 1247.62987 1.2851 0.00053572 2.7244 0.0011358 4.0095 0.0016715 416.8852710253668 32.471 0.25198 28.615 28.463 28.715 -3.8562 24 13 3 0 0 0 0.6249 1 18575 18575 5.0475 0.93089 1 5573000 2108 14615 1472 1497 2349 2349 0.01596201909046613 APFPEDKF 8 Unmodified _APFPEDKF_ 0 0 0 REV__CAPN13|p.T39P|1|0.2|ENSG00000162949|chr2:30787211-30787211|T/G|missense_variant REV__CAPN13|p.T39P|1|0.2|ENSG00000162949|chr2:30787211-30787211|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7328796386719 2 475.734543 949.454533 NaN NaN NaN NaN NaN NaN NaN 73.443 1 73.443 72.943 73.943 0 0 0 0 0.94061 1 40887 40887 12.532 0 1 + 2109 16755 1473 1498 2350 2350 -0.022215928851892386 APFPEDKF 8 Unmodified _APFPEDKF_ 0 0 0 REV__CAPN13|p.T39P|1|0.2|ENSG00000162949|chr2:30787211-30787211|T/G|missense_variant REV__CAPN13|p.T39P|1|0.2|ENSG00000162949|chr2:30787211-30787211|T/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7346496582031 2 475.734543 949.454533 0.81361 0.00038706 -0.94565 -0.00044988 -0.13203 -6.2812E-05 475.73420218114444 73.886 0.36115 73.411 73.252 73.613 -0.47588 41 17 3 0 0 0 0.75262 1 40517 40517 12.532 0 1 3430500 + 2110 16755 1473 1498 2351 2351 -0.022215928851892386 APFPHGDSAL 10 Unmodified _APFPHGDSAL_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MSMS AL20221201_MKP_PDAC_01 4 506.2471618652344 2 506.248349 1010.48214 NaN NaN NaN NaN NaN NaN NaN 44.213 1 39.361 38.861 39.861 -4.852 0 0 0 0.19054 1 26964 26964 43.858 19.838 1 2111 411 1474 1499 2352 2352 -0.022676896249663514 APFPHPLWL 9 Unmodified _APFPHPLWL_ 0 0 0 nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.8139038085938 2 539.297645 1076.58074 1.4073 0.00075898 -3.3047 -0.0017822 -1.8974 -0.0010232 539.2958984962959 98.214 0.16722 92.038 91.952 92.12 -6.1757 17 10 2 0 0 0 0.018873 1 65104 65104 67.413 42.739 1 33672000 2112 8144 1475 1500 2353 2353 0.04550958410732164 APFQGDQRSL 10 Unmodified _APFQGDQRSL_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENST00000559863.1_1_14:24633074-24633357:+|nuORF ENSG00000213928|ENST00000396864|IRF9 ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7846069335938 2 559.783087 1117.55162 -0.64343 -0.00036018 4.1497 0.0023229 3.5062 0.0019627 559.7853597793195 32.207 0.43565 32.207 31.88 32.316 0 37 21 2 0 0 0 0.087164 1 16783 16783 49.527 9.5699 1 5602300 2113 10466 1476 1501 2354 2354 -0.0024523067620521033 APFQGDQRSL 10 Unmodified _APFQGDQRSL_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENST00000559863.1_1_14:24633074-24633357:+|nuORF ENSG00000213928|ENST00000396864|IRF9 ENSG00000213928|ENST00000396864|IRF9 MSMS AL20221201_MKP_PDAC_01 4 559.7841796875 2 559.783087 1117.55162 NaN NaN NaN NaN NaN NaN NaN 36.771 1 32.487 31.987 32.987 -4.2835 0 0 0 0.34963 1 21503 21503 34.222 7.3381 1 2114 10466 1476 1501 2355 2355 -0.0024523067620521033 APFQGRVLI 9 Unmodified _APFQGRVLI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7998962402344 2 500.800552 999.58655 NaN NaN NaN NaN NaN NaN NaN 56.677 1 56.608 56.108 57.108 -0.068737 0 0 0 0.26667 1 30837 30837 26.884 2.8631 1 2115 9729 1477 1502 2356 2356 0.08674056922438922 APFQSMQTVF 10 Oxidation (M) _APFQSM(Oxidation (M))QTVF_ APFQSM(1)QTVF APFQSM(46)QTVF 0 0 1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2761840820312 2 586.276249 1170.53795 0.40566 0.00023783 0.063509 3.7234E-05 0.46917 0.00027506 586.2765363118125 57.337 0.35588 56.847 56.668 57.024 -0.48974 38 16 3 0 0 0 0.10424 1 31140 31140 45.7 26.338 1 8096800 2116 49 1478 1503 2357 2357 1 -0.040502244996559966 APFQSMQTVF 10 Oxidation (M) _APFQSM(Oxidation (M))QTVF_ APFQSM(1)QTVF APFQSM(46)QTVF 0 0 1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.27587890625 2 586.276249 1170.53795 0.95221 0.00055826 0.15715 9.2131E-05 1.1094 0.00065039 586.2769116910746 56.996 0.39629 56.928 56.72 57.116 -0.068741 27 19 3 0 0 0 0.10424 1 30999 30999 45.7 29.852 1 4075400 2117 49 1478 1503 2358 2358 1 -0.040502244996559966 APFQSMQTVF 10 Unmodified _APFQSMQTVF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2806396484375 2 578.278792 1154.54303 0.50218 0.0002904 0.8737 0.00050524 1.3759 0.00079564 578.2802973890057 73.191 0.47793 73.233 73.108 73.586 0.041733 37 21 3 0 0 0 0.5933 1 40416 40416 11.495 1.4208 1 2191600 2118 49 1478 1504 2359 2359 -0.028059206370244283 APFQSMQTVF 10 Unmodified _APFQSMQTVF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2808227539062 2 578.278792 1154.54303 1.0657 0.00061628 1.5636 0.00090422 2.6294 0.0015205 578.2799062821235 81.198 0.42064 75.022 74.827 75.247 -6.1757 43 24 2 0 0 0 0.16361 1 53291 53291 38.176 14.155 1 22628000 2119 49 1478 1504 2360 2360 -0.028059206370244283 APFRCYHFIFH 11 Unmodified _APFRCYHFIFH_ 0 0 0 ENSG00000151611|ENST00000649156|MMAA;ENST00000506919.1_1_4:146560261-146567442:+|nuORF ENSG00000151611|ENST00000649156|MMAA;ENST00000506919.1_1_4:146560261-146567442:+|nuORF ENSG00000151611|ENST00000649156|MMAA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 719.3479614257812 2 719.347874 1436.6812 NaN NaN NaN NaN NaN NaN NaN 26.85 1 26.878 26.378 27.378 0.028664 0 0 0 0.94301 1 13940 13940 0.35063 0 1 2120 6126;14531 1479 1505 2361 2361 -0.019677525979204802 APFRSEVCF 9 Carbamidomethyl (C) _APFRSEVC(Carbamidomethyl (C))F_ APFRSEVC(1)F APFRSEVC(70)F 0 1 0 nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7632446289062 2 556.763309 1111.51206 1.2486 0.0006952 -0.13021 -7.2496E-05 1.1184 0.00062271 556.7632450267199 55.185 0.63058 49.264 48.973 49.603 -5.9211 124 39 4 0 0 0 0.013609 3 35324 35052;35185;35324 70.332 24.592 1 604120000 2121 7100 1480 1506 2362;2363;2364 2364 695 -0.039230739512731816 APFSEPSAHL 10 Unmodified _APFSEPSAHL_ 0 0 0 ENST00000382252.5_1_7:6694764-6695430:+|nuORF ENST00000382252.5_1_7:6694764-6695430:+|nuORF ENST00000382252.5_1_7:6694764-6695430:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7640991210938 2 528.261456 1054.50836 0.094061 4.9689E-05 2.8575 0.0015095 2.9516 0.0015592 528.2622259261101 71.48 0.35416 71.48 71.363 71.717 0 34 15 3 0 0 0 0.23862 1 39784 39784 3.9444 1.6417 1 413320 2122 12627 1481 1507 2365 2365 -0.016714204534764576 APFSKVLTF 9 Unmodified _APFSKVLTF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2908020019531 2 505.289485 1008.56442 0.14257 7.2037E-05 1.7297 0.00087398 1.8722 0.00094602 505.2906626791097 68.209 0.3418 67.728 67.558 67.9 -0.48119 29 14 3 0 0 0 0.12424 1 37251 37251 30.637 0 1 2837800 2123 8008;3530 1482 1508 2366 2366 0.06047832453987212 APFSKVLTF 9 Unmodified _APFSKVLTF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2910766601562 2 505.289485 1008.56442 0.83732 0.00042309 0.85535 0.0004322 1.6927 0.00085529 505.2900502049019 64.614 0.35521 64.604 64.415 64.77 -0.010529 52 17 4 0 0 0 0.011291 2 35341 35341;35443 76.825 0 1 19353000 2124 8008;3530 1482 1508 2367;2368 2367 0.06047832453987212 APFSKVLTF 9 Unmodified _APFSKVLTF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2897644042969 2 505.289485 1008.56442 0.39934 0.00020178 0.11781 5.9526E-05 0.51714 0.00026131 505.2895051545632 67.66 0.5603 67.678 67.474 68.035 0.018028 96 27 5 0 0 0 0.010301 3 37085 37085;37186;37295 79.596 0 1 262730000 2125 8008;3530 1482 1508 2369;2370;2371 2369 0.06047832453987212 APFSKVLTF 9 Unmodified _APFSKVLTF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2897644042969 2 505.289485 1008.56442 0.65126 0.00032908 -0.26047 -0.00013161 0.39079 0.00019746 505.2892705706169 82.731 1.8365 76.556 75.288 77.125 -6.1757 310 103 4 0 0 0 0.0089732 7 54115 53644;53993;54115;54250;54380;54506;54641 86.332 0 1 155930000 2126 8008;3530 1482 1508 2372;2373;2374;2375;2376;2377;2378 2374 0.06047832453987212 APFSKVLTFY 10 Unmodified _APFSKVLTFY_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3228149414062 2 586.82115 1171.62775 0.35156 0.0002063 0.10008 5.873E-05 0.45164 0.00026503 586.8207203268358 72.976 0.20856 73.018 72.88 73.089 0.041733 15 9 2 0 0 0 0.42143 1 40183 40183 20.415 11.031 1 1714300 2127 8008 1483 1509 2379 2379 0.048797731712284076 APFSSALDVGF 11 Unmodified _APFSSALDVGF_ 0 0 0 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7;ENST00000460444.5_1_3:11340169-11346011:+|nuORF;ENST00000470474.1_1_3:11314090-11340334:+|nuORF nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7761840820312 2 555.776939 1109.53933 0.72608 0.00040354 0.65394 0.00036345 1.38 0.00076699 555.7774851557758 83.684 0.33842 83.186 83.028 83.367 -0.49751 22 13 2 0 0 0 0.10551 1 45807 45807 41.84 25.992 1 1568700 2128 9966 1484 1510 2380 2380 -0.01106267139243755 APFSSALDVGF 11 Unmodified _APFSSALDVGF_ 0 0 0 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7;ENST00000460444.5_1_3:11340169-11346011:+|nuORF;ENST00000470474.1_1_3:11314090-11340334:+|nuORF nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7797241210938 2 555.776939 1109.53933 1.213 0.00067418 -0.12842 -7.1375E-05 1.0846 0.00060281 555.776943193874 92.038 0.50252 85.862 85.581 86.083 -6.1757 42 29 2 0 0 0 0.00081493 1 60867 60867 85.272 61.251 1 12170000 2129 9966 1484 1510 2381 2381 -0.01106267139243755 APFSYHSTF 9 Unmodified _APFSYHSTF_ 0 0 0 ENSG00000141295|ENST00000290216|SCRN2;nc|ENSG00000141295|Q96FV2-2|SCRN2 ENSG00000141295|ENST00000290216|SCRN2 ENSG00000141295|ENST00000290216|SCRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7423095703125 2 528.742899 1055.47125 0.55489 0.00029339 -0.14276 -7.5482E-05 0.41213 0.00021791 528.7425708909936 46.913 0.16114 46.576 46.442 46.604 -0.33664 12 7 2 0 0 0 0.087258 1 25112 25112 36.044 23.513 1 2127500 2130 5312 1485 1511 2382 2382 -0.054270919992632116 APFTAGTSL 9 Unmodified _APFTAGTSL_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4471435546875 1 864.44616 863.438883 0.69683 0.00060237 0.030668 2.6511E-05 0.7275 0.00062888 864.4463387548977 51.175 0.16875 51.175 51.109 51.278 0 11 7 2 0 0 0 0.023164 1 28251 28251 60.39 30.165 1 1094100 2131 4058 1486 1512 2383 2383 0.0017012059777243849 APFTAGTSL 9 Unmodified _APFTAGTSL_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.7265319824219 2 432.726718 863.438883 0.75042 0.00032472 -0.44843 -0.00019405 0.30199 0.00013068 432.7262324711097 51.183 0.34513 51.183 51.067 51.412 0 26 15 3 0 0 0 0.019979 1 28271 28271 63.563 37.222 1 4662500 2132 4058 1486 1512 2384 2384 0.0017012059777243849 APFTAGTSL 9 Unmodified _APFTAGTSL_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7267456054688 2 432.726718 863.438883 NaN NaN NaN NaN NaN NaN NaN 51.661 1 51.227 50.727 51.727 -0.43367 0 0 0 0.036587 1 27868 27868 63.563 29.376 1 2133 4058 1486 1512 2385 2385 0.0017012059777243849 APFTAGTSL 9 Unmodified _APFTAGTSL_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7270812988281 2 432.726718 863.438883 1.526 0.00066033 -1.2556 -0.00054334 0.27036 0.00011699 432.7263740578521 58.995 0.39805 52.921 52.683 53.081 -6.0745 37 21 2 0 0 0 0.0086179 2 37901 37764;37901 89.427 43.713 1 18081000 2134 4058 1486 1512 2386;2387 2387 0.0017012059777243849 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 968.4718017578125 1 968.472374 967.465098 0.57718 0.00055898 -0.82737 -0.00080128 -0.25019 -0.0002423 968.4715639182007 73.39 0.4023 73.39 73.213 73.615 0 56 21 3 0 0 0 0.0021514 2 40900 40797;40900 131.3 49.434 1 12243000 2135 4064 1487 1513 2388;2389 2389 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7396545410156 2 484.739825 967.465098 0.68458 0.00033184 -0.76519 -0.00037092 -0.080604 -3.9072E-05 484.7394111632201 73.392 0.51482 73.392 73.174 73.688 0 79 26 4 0 0 0 0.0094915 2 40823 40823;40932 81.864 45.82 1 40330000 2136 4064 1487 1513 2390;2391 2390 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4722900390625 1 968.472374 967.465098 0.60498 0.0005859 -0.68986 -0.00066811 -0.084882 -8.2206E-05 968.4716190796854 73.895 0.45139 73.419 73.187 73.638 -0.47588 72 21 4 0 0 0 0.0021514 3 40455 40357;40455;40559 131.3 49.434 1 51930000 2137 4064 1487 1513 2392;2393;2394 2393 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7399291992188 2 484.739825 967.465098 0.81948 0.00039724 -0.87611 -0.00042469 -0.056628 -2.745E-05 484.7392708776138 73.889 0.65128 73.413 73.166 73.817 -0.47588 108 29 5 0 0 0 0.0094915 3 40358 40358;40456;40560 81.864 45.82 1 142800000 2138 4064 1487 1513 2395;2396;2397 2395 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 968.4732055664062 1 968.472374 967.465098 0.52344 0.00050694 0.93411 0.00090466 1.4575 0.0014116 968.4728561387197 73.341 0.29266 73.385 73.252 73.545 0.043983 29 12 3 0 0 0 0.010877 2 40379 40379;40480 77.984 39.833 1 3282700 2139 4064 1487 1513 2398;2399 2398 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.739990234375 2 484.739825 967.465098 1.1327 0.00054908 -0.23843 -0.00011557 0.89431 0.00043351 484.73966748098707 81.273 0.70816 75.097 74.789 75.497 -6.1757 137 40 4 0 0 0 0.0086629 4 53174 53174;53299;53429;53557 101.72 50.867 1 494900000 2140 4064 1487 1513 2400;2401;2402;2403 2400 -0.019936102307724468 APFTEGISF 9 Unmodified _APFTEGISF_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 968.47265625 1 968.472374 967.465098 0.87803 0.00085035 -0.39333 -0.00038093 0.4847 0.00046942 968.4718214717863 81.268 0.61634 75.092 74.827 75.443 -6.1757 93 35 4 0 0 0 0.0021514 4 53335 53204;53241;53335;53466 131.3 49.434 1 171310000 2141 4064 1487 1513 2404;2405;2406;2407 2406 -0.019936102307724468 APFTEVLFR 9 Unmodified _APFTEVLFR_ 0 0 0 REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2 REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.2322082519531 3 360.53432 1078.58113 1.4627 0.00052735 -0.894 -0.00032232 0.56869 0.00020503 360.5340412621621 80.365 0.32703 74.19 73.989 74.316 -6.1757 42 18 3 0 0 0 0.20883 1 52732 52732 8.1555 1.4324 1 28403000 + 2142 19543 1488 1514 2408 2408 0.04498333339938654 APFTFTSHY 9 Unmodified _APFTFTSHY_ 0 0 0 ENST00000258439.7_1_2:96919100-96919328:-|nuORF ENST00000258439.7_1_2:96919100-96919328:-|nuORF ENST00000258439.7_1_2:96919100-96919328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7510375976562 2 535.750724 1069.4869 -0.33599 -0.00018001 0.79925 0.0004282 0.46326 0.00024819 535.7513981337767 33.755 0.2407 33.755 33.6 33.841 0 31 12 3 0 0 0 0.2001 1 17698 17698 23.148 5.0021 1 10619000 2143 11205 1489 1515 2409 2409 -0.04506805482196796 APFTGITDF 9 Unmodified _APFTGITDF_ 0 0 0 ENSG00000153721|ENST00000607772|CNKSR3;nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3 ENSG00000153721|ENST00000607772|CNKSR3 ENSG00000153721|ENST00000607772|CNKSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 970.48095703125 1 968.472374 967.465098 0.52344 0.00050694 0.93411 0.00090466 1.4575 0.0014116 968.4728561387197 73.341 0.29266 73.385 73.252 73.545 0.043983 29 12 3 0 0 0 0.49272 1 40433 40433 7.9102 0 1 3282700 2144 6272 1490 1516 2410 2410 -0.019936102307724468 APFTITPVF 9 Unmodified _APFTITPVF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7771301269531 2 496.776211 991.537869 1.2643 0.00062807 -0.56745 -0.0002819 0.69684 0.00034618 496.77591225454705 91.627 0.30518 91.663 91.559 91.864 0.036499 16 10 2 0 0 0 0.012158 1 50970 50970 74.396 29.989 1 3292300 2145 5337 1491 1517 2411 2411 0.04176143562665402 APFTITPVF 9 Unmodified _APFTITPVF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.776611328125 2 496.776211 991.537869 NaN NaN NaN NaN NaN NaN NaN 99.803 1 93.627 93.127 94.127 -6.1757 0 0 0 0.0233 1 66579 66579 74.396 17.855 1 2146 5337 1491 1517 2412 2412 0.04176143562665402 APFTTDWL 8 Unmodified _APFTTDWL_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7348327636719 2 475.734543 949.454533 0.81361 0.00038706 -0.94565 -0.00044988 -0.13203 -6.2812E-05 475.73420218114444 73.886 0.36115 73.411 73.252 73.613 -0.47588 41 17 3 0 0 0 0.46494 1 40408 40408 38.151 9.6643 1 3430500 2147 2174;5515 1492 1518 2413 2413 -0.022215928851892386 APFVMNISMR 10 2 Oxidation (M) _APFVM(Oxidation (M))NISM(Oxidation (M))R_ APFVM(1)NISM(1)R APFVM(54)NISM(54)R 0 0 2 REV__ENST00000368102.5_1_1:159805660-159805777:-|nuORF REV__ENST00000368102.5_1_1:159805660-159805777:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2896118164062 2 599.291376 1196.5682 0.011874 7.1159E-06 -1.6531 -0.00099068 -1.6412 -0.00098356 599.2904380381069 56.71 0.86357 50.733 50.266 51.13 -5.9769 101 50 3 0 0 0 0.067957 1 36279 36279 53.833 21.047 1 56157000 + 2148 26004 1493 1519 2414 2414 1858;1859 -0.022221891060780763 APFWDDADF 9 Unmodified _APFWDDADF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2252807617188 2 542.224539 1082.43453 0.22248 0.00012063 0.44114 0.0002392 0.66361 0.00035983 542.2246004694281 81.565 0.34328 81.565 81.416 81.759 0 40 17 3 0 0 0 0.078417 2 45241 45241;45344 38.151 30.241 1 1859200 2149 5669 1494 1520 2415;2416 2415 -0.10339388615830103 APFWDDADF 9 Unmodified _APFWDDADF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2237548828125 2 542.224539 1082.43453 0.95886 0.00051992 -0.15405 -8.3527E-05 0.80481 0.00043639 542.2244212683706 89.867 0.4826 83.692 83.452 83.934 -6.1757 42 26 2 0 0 0 0.087258 1 59325 59325 36.044 23.513 1 10688000 2150 5669 1494 1520 2417 2417 -0.10339388615830103 APFWPVMFYPY 11 Unmodified _APFWPVMFYPY_ 0 0 0 ENST00000397137.5_2_20:36147118-36147202:-|nuORF ENST00000397137.5_2_20:36147118-36147202:-|nuORF ENST00000397137.5_2_20:36147118-36147202:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 709.3380737304688 2 709.33611 1416.65767 NaN NaN NaN NaN NaN NaN NaN 80.919 1 80.919 80.419 81.419 0 0 0 0 0.94144 1 44924 44924 1.4819 1.0236 1 2151 12816 1495 1521 2418 2418 -0.03399611155077764 APFYPPFPVV 10 Unmodified _APFYPPFPVV_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.539794921875 3 378.539182 1132.59572 NaN NaN NaN NaN NaN NaN NaN 21.585 1 21.585 21.085 22.085 0 0 0 0 0.96627 1 10933 10933 2.086 0.63089 1 + 2152 22247 1496 1522 2419 2419 0.03472405488082586 APGAHPVLLL 10 Unmodified _APGAHPVLLL_ 0 0 0 ENST00000374279.3_1_9:114659094-114659565:+|nuORF ENST00000374279.3_1_9:114659094-114659565:+|nuORF ENST00000374279.3_1_9:114659094-114659565:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3030395507812 2 494.302927 986.591301 0.80462 0.00039773 -0.29156 -0.00014412 0.51306 0.00025361 494.3027419321421 68.633 0.29417 68.658 68.499 68.793 0.025154 22 13 2 0 0 0 0.34789 1 37734 37734 24.674 4.2203 1 3488000 2153 12442 1497 1523 2420 2420 0.09746941065179726 APGAPEPEP 9 Unmodified _APGAPEPEP_ 0 0 0 ENSG00000188060|ENST00000465518|RAB42 ENSG00000188060|ENST00000465518|RAB42 ENSG00000188060|ENST00000465518|RAB42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 866.4151000976562 1 864.409774 863.402498 -0.51454 -0.00044478 0.26553 0.00022953 -0.24901 -0.00021525 864.4099870545078 28.766 0.26165 28.766 28.641 28.903 0 30 12 3 0 0 0 0.53666 1 14900 14900 5.2307 0.47466 1 6044300 2154 9624 1498 1524 2421 2421 -0.03466756298951168 APGARATPVA 10 Unmodified _APGARATPVA_ 0 0 0 ENST00000481816.5_3_3:119298332-119299463:+|nuORF;ENST00000471850.1_1_3:119298548-119305161:+|nuORF;ENST00000357003.7_1_3:119298548-119299463:+|nuORF;ENST00000478399.5_1_3:119298548-119298770:+|nuORF ENST00000481816.5_3_3:119298332-119299463:+|nuORF ENST00000481816.5_3_3:119298332-119299463:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7588500976562 2 455.758884 909.503215 0.049861 2.2725E-05 0.40597 0.00018503 0.45583 0.00020775 455.7593140966383 24.036 0.16322 24.036 23.936 24.099 0 12 7 2 0 0 0 0.63399 1 12269 12269 9.3831 1.2276 1 355190 2155 14090 1499 1525 2422 2422 0.04484320474546166 APGASKLRAVL 11 Unmodified _APGASKLRAVL_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5596923828125 3 361.560869 1081.66078 -0.23533 -8.5086E-05 -0.010522 -3.8043E-06 -0.24585 -8.889E-05 361.56079651033735 36.022 0.54927 36.047 35.826 36.375 0.024971 30 24 2 0 0 0 0.53952 1 19076 19076 8.2864 4.1698 1 1749700 2156 7194 1500 1526 2423 2423 0.1232140001393418 APGECRWHY 9 Unmodified _APGECRWHY_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.200927734375 2 559.74545 1117.47635 -0.27535 -0.00015413 0.68917 0.00038576 0.41382 0.00023163 560.2454788935105 34.654 0.21252 34.654 34.54 34.753 0 17 10 2 0 0 0 0.203 1 18258 18258 9.3474 5.0182 1 1296400 2157 10372 1501 1527 2424 2424 -0.07769111408265417 APGECRWHY 9 Unmodified _APGECRWHY_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.74545 1117.47635 -0.11297 -6.3237E-05 5.0939 0.0028513 4.9809 0.002788 559.7489639080386 34.856 0.18352 34.665 34.584 34.767 -0.19131 0.0053476 0.0013338 NaN 9.3474 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1198500 2158 10372 1501 1527 -0.07769111408265417 APGEDDEEEE 10 Unmodified _APGEDDEEEE_ 0 0 0 REV__ENSG00000159335|ENST00000309083|PTMS REV__ENSG00000159335|ENST00000309083|PTMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.200927734375 2 560.201655 1118.38876 -0.26989 -0.00015119 -1.3765 -0.00077114 -1.6464 -0.00092233 560.2007807239347 34.849 0.82124 34.849 34.308 35.129 0 142 42 4 0 0 0 0.68719 1 18258 18258 4.3292 0.38484 1 15960000 + 2159 21473 1502 1528 2425 2425 -0.1657012337936976 APGEETFC 8 Unmodified _APGEETFC_ 0 0 0 REV__CON__Q3SZ57 REV__CON__Q3SZ57 MSMS AL20221201_MKP_PDAC_01 4 427.1745300292969 2 427.173461 852.332369 NaN NaN NaN NaN NaN NaN NaN 51.327 1 45.678 45.178 46.178 -5.649 0 0 0 0.95201 1 32291 32291 10.183 0.83596 1 + + 2160 16876 1503 1529 2426 2426 -0.0997037795906408 APGEFRAIM 9 Oxidation (M) _APGEFRAIM(Oxidation (M))_ APGEFRAIM(1) APGEFRAIM(52) 0 0 1 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2518615722656 2 504.252577 1006.4906 -0.11932 -6.0165E-05 -4.1839 -0.0021098 -4.3033 -0.0021699 504.2524002064732 34.993 0.51114 34.993 34.656 35.167 0 49 26 3 0 0 0 0.036857 1 18544 18544 51.63 19.324 1 7737800 2161 6746 1504 1530 2427 2427 1170 -0.012384589799808055 APGEFRAIM 9 Oxidation (M) _APGEFRAIM(Oxidation (M))_ APGEFRAIM(1) APGEFRAIM(44) 0 0 1 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2528991699219 2 504.252577 1006.4906 -0.81027 -0.00040858 0.31691 0.0001598 -0.49336 -0.00024878 504.25296017588227 35.136 0.34518 34.913 34.762 35.107 -0.2224 23 15 2 0 0 0 0.05483 1 18379 18379 43.772 22.026 1 2007400 2162 6746 1504 1530 2428 2428 1170 -0.012384589799808055 APGEFRAIM 9 Unmodified _APGEFRAIM_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2559509277344 2 496.25512 990.495686 0.85853 0.00042605 0.66631 0.00033066 1.5248 0.00075671 496.2554446097746 54.555 0.39462 48.69 48.454 48.848 -5.8653 41 24 2 0 0 0 0.008513 1 34594 34594 99.755 55.897 1 28480000 2163 6746 1504 1531 2429 2429 5.844882628025516E-05 APGEQFLGSI 10 Unmodified _APGEQFLGSI_ 0 0 0 REV__ENST00000465578.1_1_22:45929748-45931270:+|nuORF REV__ENST00000465578.1_1_22:45929748-45931270:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7689819335938 2 509.763832 1017.51311 0.47338 0.00024131 0.63557 0.00032399 1.109 0.0005653 509.7645954157727 45.576 0.7294 40.621 40.269 40.999 -4.9549 78 49 2 0 0 0 0.18021 1 27811 27811 36.127 0 1 59356000 + 2164 27394 1505 1532 2430 2430 0.0050546368928507945 APGFKEPE 8 Unmodified _APGFKEPE_ 0 0 0 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.6900634765625 1 874.430509 873.423233 0.33511 0.00029303 0.21052 0.00018409 0.54564 0.00047712 874.4306054126087 99.742 0.19008 93.566 93.474 93.664 -6.1757 31 12 3 0 0 0 0.65867 1 66455 66455 20.871 1.4322 1 136210000 2165 2158 1506 1533 2431 2431 -0.018541659192806037 APGGEFREAF 10 Unmodified _APGGEFREAF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50635456-50635792:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7596435546875 2 540.759081 1079.50361 0.30628 0.00016562 0.36203 0.00019577 0.66831 0.00036139 540.7592470007613 58.427 0.42345 58.427 58.206 58.63 0 60 16 5 0 0 0 0.48505 1 32589 32589 17.113 17.113 1 84124000 2166 8011 1507 1534 2432 2432 -0.0329630459625605 APGGKAGAR 9 Unmodified _APGGKAGAR_ 0 0 0 REV__ENSG00000160951|ENST00000292513|PTGER1 REV__ENSG00000160951|ENST00000292513|PTGER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.7249145507812 2 392.724844 783.435135 0.59513 0.00023372 -0.3568 -0.00014013 0.23832 9.3596E-05 392.72476705988095 26.391 0.26022 23.44 23.3 23.56 -2.9511 22 13 2 0 0 0 0.23158 1 14517 14517 20.454 0 1 7053100 + 2167 21574 1508 1535 2433 2433 0.03475495614554802 APGGLFGGPHF 11 Unmodified _APGGLFGGPHF_ 0 0 0 REV__nc|ENSG00000179348|P23769-2|GATA2 REV__nc|ENSG00000179348|P23769-2|GATA2 MSMS AL20221201_MKP_PDAC_01 4 528.768310546875 2 528.766709 1055.51886 NaN NaN NaN NaN NaN NaN NaN 33.478 1 29.492 28.992 29.992 -3.9853 0 0 0 0.39562 1 19200 19200 28.487 0 1 + 2168 23093 1509 1536 2434 2434 -0.006673930083934465 APGHHQPDGH 10 Unmodified _APGHHQPDGH_ 0 0 0 REV__ENST00000267116.7_1_12:56651669-56652078:-|nuORF REV__ENST00000267116.7_1_12:56651669-56652078:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7799682617188 2 526.736471 1051.45839 0.4656 0.00024525 2.4585 0.001295 2.9241 0.0015402 526.7375650455316 31.281 0.14494 31.281 31.234 31.379 0 9 6 2 0 0 0 0.23489 1 16281 16281 7.9102 0 1 964130 + 2169 25110 1510 1537 2435 2435 -0.06528110338763327 APGHLWRI 8 Unmodified _APGHLWRI_ 0 0 0 ENST00000260129.5_1_8:56686223-56695335:+|nuORF ENST00000260129.5_1_8:56686223-56695335:+|nuORF ENST00000260129.5_1_8:56686223-56695335:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7325439453125 2 475.271961 948.52937 0.33515 0.00015929 -2.138 -0.0010161 -1.8028 -0.00085683 475.27060205133654 38.157 0.17526 38.157 38.028 38.204 0 12 8 2 0 0 0 8.7369 1 20282 20282 6.3541 0 1 2594400 2170 11222 1511 1538 2436 2436 0.053046344366862286 APGHRELIAS 10 Unmodified _APGHRELIAS_ 0 0 0 ENST00000596372.1_1_19:58597614-58598830:-|nuORF ENST00000596372.1_1_19:58597614-58598830:-|nuORF ENST00000596372.1_1_19:58597614-58598830:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.8740844726562 3 350.861207 1049.56179 1.4408 0.00050554 0.32932 0.00011555 1.7702 0.00062108 351.19562016514834 28.574 0.29261 25.426 25.262 25.555 -3.1482 17 14 2 0 0 0 0.23922 1 15964 15964 4.4062 4.4062 1 5829000 2171 15764 1512 1539 2437 2437 0.038993770490378665 APGIRDHESL 10 Unmodified _APGIRDHESL_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5244750976562 3 365.524484 1093.55162 -0.32367 -0.00011831 0.12404 4.534E-05 -0.19963 -7.2969E-05 365.5247357228838 23.564 0.22512 23.564 23.469 23.694 0 24 11 3 0 0 0 0.64628 1 12007 12007 11.518 3.3624 1 1408000 2172 16241 1513 1540 2438 2438 0.008587693238041538 APGIRDHESL 10 Unmodified _APGIRDHESL_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3152465820312 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 70.44 1 69.963 69.463 70.463 -0.47762 0 0 0 0.81521 1 38526 38526 11.64 0.81637 1 2173 16241 1513 1540 2439 2439 0.008587693238041538 APGIRDHESL 10 Unmodified _APGIRDHESL_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5245666503906 3 365.524484 1093.55162 1.1959 0.00043713 -0.35671 -0.00013038 0.8392 0.00030675 365.52466914390584 26.677 0.2055 23.726 23.597 23.803 -2.9511 23 10 3 0 0 0 0.38092 1 14691 14691 14.957 4.6419 1 8380700 2174 16241 1513 1540 2440 2440 0.008587693238041538 APGIRDHESL 10 Unmodified _APGIRDHESL_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MSMS AL20221201_MKP_PDAC_01 4 547.783935546875 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 26.686 1 23.735 23.235 24.235 -2.9511 0 0 0 0.72101 1 14731 14731 15.739 4.2439 1 2175 16241 1513 1540 2441 2441 0.008587693238041538 APGITEKAP 9 Unmodified _APGITEKAP_ 0 0 0 nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.91650390625 2 442.247818 882.481082 1.1708 0.0005178 1.043 0.00046127 2.2138 0.00097907 442.2482814520835 32.22 0.33532 28.364 28.198 28.533 -3.8562 26 19 2 0 0 0 0.52067 1 18303 18303 6.2058 0.97511 1 10880000 2176 2307 1514 1541 2442 2442 0.0351409600613124 APGKQPGKAA 10 Unmodified _APGKQPGKAA_ 0 0 0 ENST00000454103.1_1_10:21683006-21683324:+|nuORF ENST00000454103.1_1_10:21683006-21683324:+|nuORF ENST00000454103.1_1_10:21683006-21683324:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7662353515625 2 462.766709 923.518865 -0.063977 -2.9607E-05 -0.10379 -4.8029E-05 -0.16776 -7.7636E-05 462.76664291462504 15.966 0.21608 15.966 15.848 16.064 0 121 50 3 0 0 0 0.62068 1 7693 7693 10.074 0.6908 1 3162500 2177 13565 1515 1542 2443 2443 0.054046069916125816 APGKRILVL 9 Unmodified _APGKRILVL_ 0 0 0 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.826904296875 2 483.826569 965.638586 0.56312 0.00027245 -0.14858 -7.1886E-05 0.41454 0.00020057 483.8264618454226 40.475 0.33443 40.48 40.316 40.65 0.0050545 37 15 3 0 0 0 0.03568 2 21645 21537;21645 52.268 34.133 1 15684000 2178 6133 1516 1543 2444;2445 2445 0.1543922033616809 APGKRILVL 9 Unmodified _APGKRILVL_ 0 0 0 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.3286743164062 2 483.826569 965.638586 0.67724 0.00032767 -0.017939 -8.6794E-06 0.6593 0.00031899 483.82652800789054 44.522 0.3922 39.67 39.471 39.863 -4.852 56 31 2 0 0 0 0.031062 2 27116 27116;27244 54.774 30.1 1 34477000 2179 6133 1516 1543 2446;2447 2446 0.1543922033616809 APGKRLID 8 Unmodified _APGKRLID_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 435.5818176269531 2 435.263802 868.513051 0.80484 0.00035032 -1.0484 -0.00045632 -0.24354 -0.000106 435.26352438407855 43.201 0.25416 38.436 38.258 38.513 -4.7648 24 17 2 0 0 0 8.7369 1 26156 26156 16.942 1.0951 1 12527000 2180 3759 1517 1544 2448 2448 0.07353508479945958 APGKVICEM 9 Carbamidomethyl (C),Oxidation (M) _APGKVIC(Carbamidomethyl (C))EM(Oxidation (M))_ APGKVIC(1)EM APGKVICEM(1) APGKVIC(42)EM APGKVICEM(42) 0 1 1 nc|ENSG00000112304|Q9NPJ3-2|ACOT13;ENSG00000112304|ENST00000230048|ACOT13 nc|ENSG00000112304|Q9NPJ3-2|ACOT13 nc|ENSG00000112304|Q9NPJ3-2|ACOT13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7461853027344 2 510.74627 1019.47799 0.45229 0.00023101 -2.8259 -0.0014433 -2.3736 -0.0012123 510.7448064256211 22.307 0.1721 19.572 19.542 19.714 -2.7348 9 8 2 0 0 0 0.06294 1 12023 12023 41.84 18.691 1 1544900 2181 2881 1518 1545 2449 2449 295 501 -0.03097238434531846 APGLHFWF 8 Unmodified _APGLHFWF_ 0 0 0 REV__ENST00000240487.5_2_4:154556692-154557535:+|nuORF REV__ENST00000240487.5_2_4:154556692-154557535:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.8942260742188 2 487.747788 973.481023 NaN NaN NaN NaN NaN NaN NaN 22.133 1 19.398 18.898 19.898 -2.7348 0 0 0 0.94749 1 11893 11893 11.114 1.0405 1 + 2182 24841 1519 1546 2450 2450 -0.006778592031992048 APGLRISL 8 Unmodified _APGLRISL_ 0 0 0 REV__ENSG00000141858|ENST00000533683|SAMD1 REV__ENSG00000141858|ENST00000533683|SAMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7605895996094 2 413.760895 825.507237 1.2706 0.00052572 -0.28832 -0.0001193 0.98228 0.00040643 413.7606759974616 61.286 0.47207 55.138 54.865 55.337 -6.1478 53 23 3 0 0 0 0.23628 1 39331 39331 64.236 2.8788 1 126510000 + 2183 20552 1520 1547 2451 2451 0.08750409968274653 APGLRLLQL 9 Unmodified _APGLRLLQL_ 0 0 0 ENST00000261038.5_1_3:122514002-122525788:+|nuORF;ENST00000477647.1_1_3:122514002-122598222:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF ENST00000261038.5_1_3:122514002-122525788:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8167114257812 2 490.816202 979.617851 0.61313 0.00030093 2.728 0.001339 3.3412 0.0016399 490.8162519982861 73.85 0.27098 73.894 73.803 74.074 0.043983 20 12 2 0 0 0 0.00856 1 40724 40724 100.37 36.135 1 3024400 2184 11233 1521 1548 2452 2452 0.127226299565109 APGLRLVL 8 Unmodified _APGLRLVL_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42;ENST00000395808.7_1_19:890970-891072:-|nuORF ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.779296875 2 419.779088 837.543623 0.89271 0.00037474 -0.33375 -0.0001401 0.55896 0.00023464 419.7788814990919 66.048 0.17287 66.058 65.973 66.146 0.0095596 15 8 2 0 0 0 0.55032 1 36241 36241 30.225 0 1 4097200 2185 1470 1522 1549 2453 2453 0.1183528686497084 APGLRQLPGP 10 Unmodified _APGLRQLPGP_ 0 0 0 ENST00000530471.1_3_11:45826723-45827525:+|nuORF ENST00000530471.1_3_11:45826723-45827525:+|nuORF ENST00000530471.1_3_11:45826723-45827525:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.296630859375 2 503.295633 1004.57671 1.2919 0.0006502 -0.52958 -0.00026654 0.7623 0.00038366 503.79549947205584 90.847 0.53852 84.672 84.474 85.012 -6.1757 72 31 4 0 0 0 0.50944 1 59947 59947 15.847 0 1 32470000 2186 14891 1523 1550 2454 2454 0.07460868917030439 APGNMQPPIR 10 Unmodified _APGNMQPPIR_ 0 0 0 ENSG00000178965|ENST00000326665|ERICH3 ENSG00000178965|ENST00000326665|ERICH3 ENSG00000178965|ENST00000326665|ERICH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8594055175781 3 360.858809 1079.5546 1.4297 0.00051593 0.34028 0.00012279 1.77 0.00063872 360.8588374702362 18.657 0.36481 16.036 15.793 16.158 -2.6215 59 37 2 0 0 0 0.56348 1 9860 9860 7.9454 0 1 2314600 2187 8788 1524 1551 2455 2455 0.018003211769382688 APGPAPTRCL 10 Unmodified _APGPAPTRCL_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7605285644531 2 491.760569 981.506586 0.24988 0.00012288 0.11964 5.8836E-05 0.36953 0.00018172 491.76079500347055 39.859 0.33633 35.33 35.14 35.477 -4.5294 43 22 3 0 0 0 0.027759 1 23689 23689 69.105 1.2667 1 28568000 2188 8291 1525 1552 2456 2456 0.015092472569108395 APGPFLDSLLQ 11 Unmodified _APGPFLDSLLQ_ 0 0 0 ENST00000445759.1_1_X:118601674-118602820:-|nuORF ENST00000445759.1_1_X:118601674-118602820:-|nuORF ENST00000445759.1_1_X:118601674-118602820:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2915649414062 2 579.313689 1156.61282 2.4041 0.0013928 -0.85301 -0.00049416 1.5511 0.0008986 579.3130118565363 94.863 0.41821 94.878 94.594 95.012 0.014244 27 15 2 0 0 0 0.28456 1 52627 52627 11.495 2.1116 1 3255700 2189 13458 1526 1553 2457 2457 0.04078281303259246 APGPGRKEL 9 Unmodified _APGPGRKEL_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7678833007812 2 462.766709 923.518865 0.24492 0.00011334 0.46187 0.00021374 0.7068 0.00032708 462.76697388017436 16.806 0.25676 14.249 14.133 14.39 -2.557 104 42 3 0 0 0 0.18144 1 8686 8686 24.991 7.8781 1 12291000 2190 5185 1527 1554 2458 2458 0.054046069916125816 APGPPSRPPAL 11 Unmodified _APGPPSRPPAL_ 0 0 0 ENST00000484738.1_1_1:244816912-244817122:+|nuORF ENST00000484738.1_1_1:244816912-244817122:+|nuORF ENST00000484738.1_1_1:244816912-244817122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8031005859375 2 530.300916 1058.58728 -0.49121 -0.00026049 -0.058392 -3.0965E-05 -0.5496 -0.00029145 530.3007088727109 20.027 0.16074 20.055 19.974 20.135 0.028357 13 7 2 0 0 0 0.39848 1 10121 10121 21.59 1.1756 1 1412800 2191 14156 1528 1555 2459 2459 0.0603285157146729 APGPPSRPPAL 11 Unmodified _APGPPSRPPAL_ 0 0 0 ENST00000484738.1_1_1:244816912-244817122:+|nuORF ENST00000484738.1_1_1:244816912-244817122:+|nuORF ENST00000484738.1_1_1:244816912-244817122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8701477050781 3 353.869703 1058.58728 0.0023033 8.1506E-07 1.0469 0.00037045 1.0492 0.00037127 353.8700628721624 20.088 0.23359 20.096 19.985 20.219 0.0078487 33 11 4 0 0 0 0.4121 1 10209 10209 20.871 2.498 1 9512500 2192 14156 1528 1555 2460 2460 0.0603285157146729 APGPRGSYL 9 Unmodified _APGPRGSYL_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2459716796875 2 459.245609 916.476666 -0.21669 -9.9515E-05 0.77419 0.00035554 0.5575 0.00025603 459.2460598417616 30.098 0.38953 30.098 29.833 30.222 0 42 18 3 0 0 0 0.05483 1 15586 15586 43.772 18.373 1 7688500 2193 7051 1529 1556 2461 2461 0.015086315832377295 APGPRGSYL 9 Unmodified _APGPRGSYL_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2470397949219 2 459.245609 916.476666 0.54181 0.00024882 1.6806 0.0007718 2.2224 0.0010206 459.2462869041537 30.06 0.42587 29.979 29.728 30.153 -0.080429 30 16 3 0 0 0 0.1685 1 15578 15578 26.268 6.8291 1 3629500 2194 7051 1529 1556 2462 2462 0.015086315832377295 APGPRGSYL 9 Unmodified _APGPRGSYL_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2471923828125 2 459.245609 916.476666 1.2166 0.0005587 0.75951 0.0003488 1.9761 0.0009075 459.2459557688603 33.533 0.67885 29.548 29.418 30.097 -3.9853 65 37 2 0 0 0 0.023481 2 19333 19207;19333 60.074 5.7984 1 22908000 2195 7051 1529 1556 2463;2464 2464 0.015086315832377295 APGPTPPPL 9 Unmodified _APGPTPPPL_ 0 0 0 nc|ENSG00000117411|O60909-2|B4GALT2 nc|ENSG00000117411|O60909-2|B4GALT2 nc|ENSG00000117411|O60909-2|B4GALT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.886962890625 2 423.739628 845.464704 -0.36364 -0.00015409 -0.47314 -0.00020049 -0.83678 -0.00035458 423.7395647627595 35.301 0.17137 35.301 35.209 35.38 0 14 8 2 0 0 0 0.19298 1 18678 18678 8.5933 0 1 5284800 2196 16149 1530 1557 2465 2465 0.03579014840045147 APGPYRQV 8 Unmodified _APGPYRQV_ 0 0 0 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7364501953125 2 444.240327 886.466101 0.68505 0.00030433 -0.69213 -0.00030747 -0.0070862 -3.148E-06 444.2397907392772 57.317 0.33461 57.317 57.156 57.49 0 21 14 2 0 0 0 8.7369 1 31875 31875 2.8892 0.58649 1 1011200 + 2197 17478 1531 1558 2466 2466 0.018326489288028824 APGQRVGML 9 Oxidation (M) _APGQRVGM(Oxidation (M))L_ APGQRVGM(1)L APGQRVGM(55)L 0 0 1 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7527770996094 2 472.752744 943.490935 -0.20669 -9.7713E-05 -1.1378 -0.0005379 -1.3445 -0.00063561 472.752344994522 25.005 0.39591 25.005 24.844 25.239 0 90 36 3 0 0 0 0.031062 1 12857 12857 54.774 12.679 1 6104800 2198 1078 1532 1559 2467 2467 177 0.016929607398878943 APGQRVGML 9 Oxidation (M) _APGQRVGM(Oxidation (M))L_ APGQRVGM(1)L APGQRVGM(48)L 0 0 1 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7532958984375 2 472.752744 943.490935 0.41832 0.00019776 -0.40477 -0.00019136 0.013552 6.4066E-06 472.7522624109359 28.02 0.51366 24.872 24.605 25.119 -3.1482 64 27 3 0 0 0 0.042911 1 15649 15649 48.346 19.859 1 35593000 2199 1078 1532 1559 2468 2468 177 0.016929607398878943 APGQRVGML 9 Unmodified _APGQRVGML_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7555541992188 2 464.755287 927.496021 0.54902 0.00025516 -2.239 -0.0010406 -1.6899 -0.00078541 464.7551472039625 38.363 0.49025 33.994 33.814 34.305 -4.3689 69 30 3 0 0 0 0.019303 2 22714 22575;22714 64.236 13.381 1 47556000 2200 1078 1532 1560 2469;2470 2470 0.029372646024967253 APGQSLSFP 9 Unmodified _APGQSLSFP_ 0 0 0 REV__ENST00000576846.1_1_17:7530278-7530680:-|nuORF REV__ENST00000576846.1_1_17:7530278-7530680:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.9203796386719 2 452.232168 902.449782 0.9022 0.000408 3.3815 0.0015292 4.2837 0.0019372 452.23192263998095 40.591 0.3244 36.062 35.904 36.228 -4.5294 29 19 2 0 0 0 0.2143 1 24186 24186 21.747 4.8044 1 9959600 + 2201 29026 1533 1561 2471 2471 -0.005344770279521072 APGRRVAMRSL 11 Unmodified _APGRRVAMRSL_ 0 0 0 nc|ENSG00000160469|Q8TDC3-2|BRSK1;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-3|BRSK1 nc|ENSG00000160469|Q8TDC3-2|BRSK1 nc|ENSG00000160469|Q8TDC3-2|BRSK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 405.5440673828125 3 405.236391 1212.68734 0.97455 0.00039492 -2.4844 -0.0010068 -1.5098 -0.00061183 405.2353949321982 18.939 0.19942 16.318 16.223 16.423 -2.6215 20 12 2 0 0 0 0.30073 1 9966 9966 2.6312 0 1 1847100 2202 6731 1534 1562 2472 2472 0.08950765633630908 APGSARRPL 9 Unmodified _APGSARRPL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7736511230469 2 462.772326 923.530098 0.14105 6.5274E-05 1.0458 0.00048398 1.1869 0.00054925 462.7728173095023 15.747 0.19046 15.752 15.643 15.834 0.0057774 29 16 2 0 0 0 0.32871 1 7832 7832 15.847 1.2655 1 1573900 2203 9425 1535 1563 2473 2473 0.0652742908575874 APGSARRPL 9 Unmodified _APGSARRPL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7728271484375 2 462.772326 923.530098 0.16475 7.6243E-05 0.50963 0.00023584 0.67438 0.00031208 462.77257817913517 16.52 0.25623 13.963 13.832 14.089 -2.557 90 37 3 0 0 0 0.2143 1 8611 8611 21.747 0.87544 1 10592000 2204 9425 1535 1563 2474 2474 0.0652742908575874 APGSARRPL 9 Unmodified _APGSARRPL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 462.772326 923.530098 -0.69747 -0.00032277 1.841 0.00085196 1.1435 0.00052919 462.7729494986548 16.039 0.082336 16.025 15.996 16.078 -0.014067 0.13618 0.0003689 NaN 15.847 39 31 2 NaN NaN NaN NaN 0 NaN NaN 0 422900 2205 9425 1535 1563 0.0652742908575874 APGSARRPLL 10 Unmodified _APGSARRPLL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.3139038085938 2 519.314358 1036.61416 0.50333 0.00026139 -0.32461 -0.00016857 0.17872 9.2813E-05 519.3140704567651 27.966 0.27359 24.817 24.71 24.983 -3.1482 24 14 2 0 0 0 0.38092 1 15569 15569 22.736 2.2827 1 6622000 2206 9425 1536 1564 2475 2475 0.09731960182671173 APGSDPVRYEF 11 Unmodified _APGSDPVRYEF_ 0 0 0 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.19970703125 3 413.199777 1236.5775 1.3599 0.00056193 -0.88467 -0.00036555 0.47527 0.00019638 413.1992862014568 37.077 0.57826 32.793 32.524 33.102 -4.2835 99 35 3 0 0 0 0.69316 1 21699 21699 2.2527 0.34635 1 47259000 2207 6422 1537 1565 2476 2476 -0.03132381224600067 APGSFDDQY 9 Unmodified _APGSFDDQY_ 0 0 0 ENSG00000111339|ENST00000228936|ART4 ENSG00000111339|ENST00000228936|ART4 ENSG00000111339|ENST00000228936|ART4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2266540527344 2 500.206347 998.39814 -0.43764 -0.00021891 1.2375 0.000619 0.79985 0.00040009 500.2071787997172 27.901 0.16227 27.901 27.783 27.945 0 11 7 2 0 0 0 0.18521 1 14338 14338 16.942 3.0362 1 762780 2208 2783 1538 1566 2477 2477 -0.10112265512520935 APGSFSFIA 9 Unmodified _APGSFSFIA_ 0 0 0 ENST00000546361.6_1_19:16629678-16629945:-|nuORF ENST00000546361.6_1_19:16629678-16629945:-|nuORF ENST00000546361.6_1_19:16629678-16629945:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.4510498046875 1 896.451245 895.443968 -0.045058 -4.0393E-05 0.75827 0.00067975 0.71321 0.00063936 896.4519778505186 62.067 0.34534 62.067 61.821 62.167 0 24 14 2 0 0 0 0.39863 1 34537 34537 12.532 0 1 1762500 2209 15104 1539 1567 2478 2478 -0.007935755396260902 APGSRLPIN 9 Unmodified _APGSRLPIN_ 0 0 0 REV__nc|ENSG00000116337|Q01433-4|AMPD2 REV__nc|ENSG00000116337|Q01433-4|AMPD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.97900390625 2 462.766709 923.518865 0.14132 6.54E-05 1.5428 0.00071397 1.6841 0.00077937 462.76750525814714 16.038 0.14088 16.043 15.978 16.119 0.0050564 17 12 2 0 0 0 0.21858 1 8005 8005 1.4819 0 1 360490 + 2210 29588 1540 1568 2479 2479 0.0540460699162395 APGSVLFQSP 10 Unmodified _APGSVLFQSP_ 0 0 0 nc|ENSG00000101115|Q9UJQ4-2|SALL4;ENSG00000101115|ENST00000217086|SALL4 nc|ENSG00000101115|Q9UJQ4-2|SALL4 nc|ENSG00000101115|Q9UJQ4-2|SALL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7671508789062 2 501.766374 1001.5182 -0.3234 -0.00016227 1.1826 0.00059338 0.85918 0.00043111 501.76702933784725 48.651 0.35553 48.651 48.452 48.808 0 44 16 4 0 0 0 0.52888 1 26794 26794 14.838 4.0143 1 14711000 2211 1914 1541 1569 2480 2480 0.017497675519166478 APGVPPRAPSL 11 Unmodified _APGVPPRAPSL_ 0 0 0 REV__ENST00000486149.2_1_6:30954274-30955276:+|nuORF REV__ENST00000486149.2_1_6:30954274-30955276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5419311523438 3 354.541586 1060.60293 1.5008 0.00053209 -1.9278 -0.00068348 -0.427 -0.00015139 354.5415458590323 34.576 0.52237 30.48 30.196 30.718 -4.0951 96 30 4 0 0 0 0.18636 2 19996 19868;19996 20.871 0 1 117990000 + 2212 27795 1542 1570 2481;2482 2482 0.07505138088527019 APGVRAVEL 9 Unmodified _APGVRAVEL_ 0 0 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2691345214844 2 456.269084 910.523616 0.0029908 1.3646E-06 -0.59339 -0.00027075 -0.5904 -0.00026938 456.2687062836032 40.9 0.43227 40.9 40.687 41.119 0 108 40 3 0 0 0 0.017075 2 21940 21940;22045 66.457 12.624 1 111620000 2213 3767 1543 1571 2483;2484 2483 0.06477491134376123 APGVRAVEL 9 Unmodified _APGVRAVEL_ 0 0 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2698669433594 2 456.269084 910.523616 0.66447 0.00030317 -0.036742 -1.6764E-05 0.62772 0.00028641 456.26907053941693 46.096 0.52067 41.142 40.848 41.369 -4.9549 104 34 4 0 0 0 0.025842 1 28291 28291 57.722 3.8892 1 206490000 2214 3767 1543 1571 2485 2485 0.06477491134376123 APGWLPLA 8 Unmodified _APGWLPLA_ 0 0 0 REV__ENSG00000181215|ENST00000531445|C4orf50 REV__ENSG00000181215|ENST00000531445|C4orf50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7381286621094 2 412.736889 823.459225 -0.1285 -5.3037E-05 3.4937 0.001442 3.3652 0.0013889 412.7381560029745 14.783 0.070082 14.789 14.747 14.817 0.0057774 4 2 2 0 0 0 0.80624 1 7359 7359 2.8892 0 1 553300 + 2215 23195 1544 1572 2486 2486 0.040433360482211356 APGYTETYYN 10 Unmodified _APGYTETYYN_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7910766601562 2 589.753661 1177.49277 -0.12014 -7.0854E-05 -2.4304 -0.0014334 -2.5506 -0.0015042 589.752565862019 35.605 0.22054 35.605 35.534 35.755 0 16 10 2 0 0 0 0.23566 1 18863 18863 3.9444 0 1 2539400 2216 16025;667 1545 1573 2487 2487 -0.08887751761176332 APHAHLNV 8 Unmodified _APHAHLNV_ 0 0 0 ENST00000415557.1_1_10:90750861-90751086:-|nuORF ENST00000415557.1_1_10:90750861-90751086:-|nuORF ENST00000415557.1_1_10:90750861-90751086:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.8831481933594 2 429.732669 857.450785 0.13529 5.814E-05 1.9917 0.0008559 2.127 0.00091404 429.7334358252775 58.734 0.29355 58.734 58.583 58.877 0 28 12 3 0 0 0 8.7369 1 32775 32775 2.5775 2.5775 1 2655300 2217 13022 1546 1574 2488 2488 0.016357821316205445 APHALVMTF 9 Unmodified _APHALVMTF_ 0 0 0 ENSG00000101417|ENST00000409299|PXMP4;nc|ENSG00000101417|Q9Y6I8-2|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 MSMS AL20221201_MKP_PDAC_01 4 493.7618713378906 2 493.760038 985.505523 NaN NaN NaN NaN NaN NaN NaN 65.871 1 59.695 59.195 60.195 -6.1757 0 0 0 0.17175 1 42795 42795 34.187 17.245 1 2218 1963 1547 1575 2489 2489 0.0121903288802514 APHASDHGRQ 10 Unmodified _APHASDHGRQ_ 0 0 0 REV__ENST00000274192.6_2_5:6669950-6670130:+|nuORF REV__ENST00000274192.6_2_5:6669950-6670130:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1724548339844 3 359.172444 1074.4955 NaN NaN NaN NaN NaN NaN NaN 19.467 1 19.467 18.967 19.967 0 0 0 0 0.96981 1 9735 9735 1.9064 0 1 + 2219 25163 1548 1576 2490 2490 -0.03876438792985937 APHDPRVVEF 10 Unmodified _APHDPRVVEF_ 0 0 0 REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3 REV__nc|ENSG00000143450|Q9UMX2-2|OAZ3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 389.703369140625 3 389.536612 1165.58801 1.3143 0.00051198 -0.54688 -0.00021303 0.76745 0.00029895 389.53640772393373 34.864 0.32198 30.769 30.632 30.954 -4.0951 31 18 2 0 0 0 0.23489 1 20173 20173 2.8433 0.4085 1 7403200 + 2220 20641 1549 1577 2491 2491 0.011836462205337739 APHEDTLSL 9 Unmodified _APHEDTLSL_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2472839355469 2 491.745639 981.476725 0.24441 0.00012019 -0.22163 -0.00010899 0.022779 1.1201E-05 491.74544115000765 39.439 0.48045 39.439 39.135 39.616 0 42 22 3 0 0 0 0.06187 1 21092 21092 42.095 9.7891 1 7542800 2221 5216 1550 1578 2492 2492 -0.014754132074131121 APHFQVSLL 9 Unmodified _APHFQVSLL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20 ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2843017578125 2 506.284734 1010.55492 0.49119 0.00024868 -0.74381 -0.00037658 -0.25261 -0.00012789 506.28418732163186 67.4 0.25603 67.418 67.258 67.514 0.018028 27 12 3 0 0 0 0.042911 1 36990 36990 48.346 6.2513 1 5377600 2222 8636 1551 1579 2493 2493 0.050060641684808616 APHFQVSLL 9 Unmodified _APHFQVSLL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20 ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.284734 1010.55492 0.26016 0.00013171 0.3139 0.00015892 0.57406 0.00029064 506.2847415429774 67.908 0.19942 67.426 67.299 67.498 -0.48219 0.0040784 0.00068051 NaN 48.346 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1302600 2223 8636 1551 1579 0.050060641684808616 APHLSKVSM 9 Oxidation (M) _APHLSKVSM(Oxidation (M))_ APHLSKVSM(1) APHLSKVSM(86) 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2612915039062 2 493.260402 984.506251 0.61255 0.00030215 0.98492 0.00048582 1.5975 0.00078797 493.26081355996916 18.086 0.24651 15.465 15.328 15.574 -2.6215 32 19 2 0 0 0 0.0089732 1 9462 9462 86.332 51.93 1 3997700 2224 5773 1552 1580 2494 2494 1043 0.013378275370769188 APHLTHHTL 9 Unmodified _APHLTHHTL_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000460163.1_1_3:113775820-113785138:+|nuORF;ENST00000466870.1_1_3:113784185-113787033:+|nuORF;ENST00000466050.5_1_3:113775696-113789591:+|nuORF ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MSMS AL20221201_MKP_PDAC_01 4 513.7786254882812 2 513.777608 1025.54066 NaN NaN NaN NaN NaN NaN NaN 18.556 1 15.935 15.435 16.435 -2.6215 0 0 0 0.050352 1 9782 9782 57.471 40.358 1 2225 6125 1553 1581 2495 2495 0.02891411740165495 APHPFPHPAF 10 Unmodified _APHPFPHPAF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.1907043457031 3 373.190776 1116.5505 0.52056 0.00019427 -0.0032262 -1.204E-06 0.51733 0.00019306 373.1907417163908 43.071 0.31932 43.055 42.864 43.184 -0.015667 42 14 4 0 0 0 0.012597 2 23036 23036;23136 74.929 64.03 1 27165000 2226 4304 1554 1582 2496;2497 2496 -0.0031140025446347863 APHPFPHPAF 10 Unmodified _APHPFPHPAF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2836303710938 2 559.282526 1116.5505 0.91144 0.00050975 -0.056013 -3.1327E-05 0.85543 0.00047843 559.2824221319302 43.089 0.24731 43.073 42.936 43.184 -0.015667 21 11 3 0 0 0 0.0015984 1 23074 23074 110.56 84.292 1 10355000 2227 4304 1554 1582 2498 2498 -0.0031140025446347863 APHPFPHPAF 10 Unmodified _APHPFPHPAF_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.1907653808594 3 373.190776 1116.5505 2.1188 0.00079073 -0.45803 -0.00017093 1.6608 0.0006198 373.1905439123724 47.685 0.55643 42.451 42.184 42.74 -5.2339 100 33 4 0 0 0 0.0015984 3 29516 29516;29641;29793 96.285 85.386 1 66801000 2228 4304 1554 1582 2499;2500;2501 2499 -0.0031140025446347863 APHPSDIHLL 10 Unmodified _APHPSDIHLL_ 0 0 0 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.72802734375 2 550.298373 1098.58219 0.37462 0.00020616 -0.040429 -2.2248E-05 0.3342 0.00018391 550.2982664255434 45.65 0.24043 45.65 45.527 45.768 0 42 11 5 0 0 0 0.66569 1 24863 24863 6.7232 0 1 17656000 2229 3319 1555 1583 2502 2502 0.03684547708849095 APHQPGPSL 9 Unmodified _APHQPGPSL_ 0 0 0 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.237548828125 2 452.237784 902.461016 -0.17415 -7.8758E-05 -0.015529 -7.0229E-06 -0.18968 -8.5781E-05 452.23761334718387 26.347 0.18479 26.347 26.263 26.448 0 12 8 2 0 0 0 0.32871 1 13543 13543 15.847 4.2069 1 616400 2230 331 1556 1584 2503 2503 0.005883450661826828 APHQQNTY 8 Unmodified _APHQQNTY_ 0 0 0 REV__nc|ENSG00000115844|Q07687-2|DLX2 REV__nc|ENSG00000115844|Q07687-2|DLX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7223815917969 2 479.722498 957.430444 0.52618 0.00025242 -1.0765 -0.0005164 -0.55029 -0.00026398 479.72257316542346 42.336 0.70627 42.336 42.03 42.737 0 94 35 5 0 0 0 0.80044 1 23036 23036 6.3541 0.59368 1 10458000 + 2231 19009 1557 1585 2504 2504 -0.049974333188629316 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1863403320312 3 360.185802 1077.53558 -0.40492 -0.00014585 0.21204 7.6373E-05 -0.19289 -6.9475E-05 360.18588293494054 20.81 0.18079 20.81 20.729 20.91 0 62 25 3 0 0 0 0.39863 1 10480 10480 12.241 7.7118 1 6086400 2232 3136;3537 1558 1586 2505 2505 -8.892122423276305E-05 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1860656738281 3 360.185802 1077.53558 -0.35933 -0.00012942 0.9374 0.00033764 0.57808 0.00020821 360.1862009438405 20.731 0.17665 20.76 20.643 20.82 0.028357 20 7 3 0 0 0 0.39863 1 10471 10471 8.1555 3.6267 1 1871800 2233 3136;3537 1558 1586 2506 2506 -8.892122423276305E-05 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.1861267089844 3 360.185802 1077.53558 0.85003 0.00030617 0.20331 7.323E-05 1.0533 0.0003794 360.1859563618421 22.924 0.47172 20.146 19.887 20.359 -2.7784 71 33 4 0 0 0 0.32871 2 12429 12315;12429 10.8 5.5026 1 30596000 2234 3136;3537 1558 1586 2507;2508 2508 -8.892122423276305E-05 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7747802734375 2 539.775065 1077.53558 0.032886 1.7751E-05 -0.42218 -0.00022788 -0.38929 -0.00021013 539.7745056670349 22.948 0.29026 20.17 20.015 20.305 -2.7784 30 17 2 0 0 0 0.095405 1 12332 12332 34.102 21.06 1 7038800 2235 3136;3537 1558 1586 2509 2509 -8.892122423276305E-05 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.185802 1077.53558 -0.40492 -0.00014585 0.21204 7.6373E-05 -0.19289 -6.9475E-05 360.18588293494054 20.81 0.18079 20.81 20.729 20.91 0 0.025054 -0.00039403 NaN 12.241 62 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6086400 2236 3136;3537 1558 1586 -8.892122423276305E-05 APHQVHNLY 9 Unmodified _APHQVHNLY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000491383.5_1_2:86716620-86718467:+|nuORF;ENST00000470160.1_1_2:86716620-86719239:+|nuORF;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B ENSG00000115548|ENST00000312912|KDM3A;nc|ENSG00000120733|Q7LBC6-2|KDM3B ENSG00000115548|ENST00000312912|KDM3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 360.185802 1077.53558 -0.35933 -0.00012942 0.9374 0.00033764 0.57808 0.00020821 360.1862009438405 20.731 0.17665 20.76 20.643 20.82 0.028357 -0.025054 0.00038977 NaN 12.241 20 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1871800 2237 3136;3537 1558 1586 -8.892122423276305E-05 APHSLAKWT 9 Unmodified _APHSLAKWT_ 0 0 0 REV__nc|ENSG00000196503|Q6T311|ARL9 REV__nc|ENSG00000196503|Q6T311|ARL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7753295898438 2 505.774534 1009.53451 NaN NaN NaN NaN NaN NaN NaN 22.657 1 22.675 22.175 23.175 0.01749 0 0 0 0.84564 1 11643 11643 2.0598 0.40713 1 + 2238 29882 1559 1587 2510 2510 0.030128935086509046 APHSTYNLY 9 Unmodified _APHSTYNLY_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2540283203125 2 533.253631 1064.49271 NaN NaN NaN NaN NaN NaN NaN 34.145 1 34.145 33.645 34.645 0 0 0 0 0.056448 1 17963 17963 54.774 24.137 1 2239 1199 1560 1588 2511 2511 -0.036957069705295 APHSTYNLY 9 Unmodified _APHSTYNLY_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2538452148438 2 533.253631 1064.49271 0.7288 0.00038863 -0.22787 -0.00012151 0.50092 0.00026712 533.2542284217149 38.29 0.40632 33.921 33.686 34.092 -4.3689 53 24 3 0 0 0 0.012148 1 22542 22542 74.423 30.016 1 14758000 2240 1199 1560 1588 2512 2512 -0.036957069705295 APHSTYNLY 9 Unmodified _APHSTYNLY_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.253631 1064.49271 -0.31461 -0.00016777 0.68956 0.00036771 0.37494 0.00019994 533.2536966148651 34.363 0.1806 34.171 34.046 34.226 -0.19131 0.12506 0.00046619 NaN 74.423 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1767500 2241 1199 1560 1588 -0.036957069705295 APHWCLGWSF 10 Unmodified _APHWCLGWSF_ 0 0 0 REV__ENST00000285605.7_1_10:99474680-99474815:+|nuORF REV__ENST00000285605.7_1_10:99474680-99474815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2745361328125 2 602.273844 1202.53313 0.11862 7.1444E-05 -4.1823 -0.0025189 -4.0637 -0.0024475 602.272744753806 58.047 0.36176 58.047 57.716 58.078 0 18 15 2 0 0 0 0.6606 1 32202 32202 7.2892 0.56607 1 819970 + 2242 25220 1561 1589 2513 2513 -0.06003063851767365 APHWKRHQL 9 Unmodified _APHWKRHQL_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5528564453125 3 391.552708 1171.63629 -0.060722 -2.3776E-05 1.1209 0.00043888 1.0602 0.00041511 391.5530794053483 15.376 0.10077 15.382 15.332 15.433 0.0057774 10 5 3 0 0 0 0.078314 1 7668 7668 38.176 25.935 1 1403300 2243 10054 1562 1590 2514 2514 0.05734184651078067 APHWKRHQL 9 Unmodified _APHWKRHQL_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.88720703125 3 391.552708 1171.63629 0.46018 0.00018019 0.35994 0.00014094 0.82012 0.00032112 391.5528588048838 16.564 0.22977 14.007 13.897 14.127 -2.557 56 33 2 0 0 0 0.047788 2 8559 8559;8560 45.7 20.743 1 7715000 2244 10054 1562 1590 2515;2516 2515 0.05734184651078067 APHYFTFF 8 Unmodified _APHYFTFF_ 0 0 0 REV__ENST00000581682.1_1_17:11787806-11828539:+|nuORF REV__ENST00000581682.1_1_17:11787806-11828539:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2455444335938 2 515.245078 1028.4756 NaN NaN NaN NaN NaN NaN NaN 87.09 1 87.09 86.59 87.59 0 0 0 0 0.97444 1 48230 48230 0.79363 0 1 + 2245 29068 1563 1591 2517 2517 -0.037495827856673714 APIAKVGVL 9 Unmodified _APIAKVGVL_ 0 0 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.286865234375 2 434.286746 866.558939 0.52333 0.00022728 -0.65387 -0.00028397 -0.13054 -5.6691E-05 434.2863788424462 48.06 0.33279 47.707 47.535 47.868 -0.3526 50 16 4 0 0 0 0.016184 1 25730 25730 67.344 20.423 1 44836000 2246 723 1564 1592 2518 2518 0.12032153662175915 APIAKVGVL 9 Unmodified _APIAKVGVL_ 0 0 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2869567871094 2 434.286746 866.558939 0.67488 0.00029309 -0.20162 -8.756E-05 0.47326 0.00020553 434.2865471261541 47.744 0.28835 47.705 47.561 47.849 -0.038643 31 13 3 0 0 0 0.087258 1 25700 25700 36.044 1.9418 1 11340000 2247 723 1564 1592 2519 2519 0.12032153662175915 APIAKVGVL 9 Unmodified _APIAKVGVL_ 0 0 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2865295410156 2 434.286746 866.558939 1.1114 0.00048267 0.46465 0.00020179 1.5761 0.00068446 434.2869243177438 53.506 0.43719 47.701 47.481 47.918 -5.8042 69 27 3 0 0 0 0.023164 2 33728 33728;33865 60.39 19.941 1 226500000 2248 723 1564 1592 2520;2521 2520 0.12032153662175915 APIDEAFESY 10 Unmodified _APIDEAFESY_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.258544921875 2 571.256037 1140.49752 0.35171 0.00020092 0.49851 0.00028477 0.85022 0.00048569 571.2562671843597 58.703 0.43587 58.703 58.489 58.924 0 53 18 4 0 0 0 0.043729 2 32644 32644;32750 61.357 29.052 1 35564000 2249 5800 1565 1593 2522;2523 2522 -0.06710867618426164 APIDEAFESY 10 Unmodified _APIDEAFESY_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2572021484375 2 571.256037 1140.49752 0.8104 0.00046294 0.15104 8.6283E-05 0.96144 0.00054923 571.2565563545378 67.057 0.48152 60.881 60.664 61.146 -6.1757 59 26 3 0 0 0 0.074936 1 43637 43637 52.268 26.869 1 65464000 2250 5800 1565 1593 2524 2524 -0.06710867618426164 APIDWGEEY 9 Unmodified _APIDWGEEY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2380981445312 2 540.237647 1078.46074 0.39775 0.00021488 0.20449 0.00011047 0.60223 0.00032535 540.2378554536068 58.091 0.69342 58.091 57.817 58.511 0 73 27 4 0 0 0 0.095405 2 32373 32267;32373 34.102 26.192 1 75075000 2251 4865 1566 1594 2525;2526 2526 -0.0753511944433285 APIDWGEEY 9 Unmodified _APIDWGEEY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2381591796875 2 540.237647 1078.46074 0.12375 6.6857E-05 0.2788 0.00015062 0.40255 0.00021747 540.2383272822137 58.783 0.36301 58.292 58.09 58.453 -0.49079 23 17 2 0 0 0 0.30562 1 31915 31915 16.942 1.0951 1 4026700 2252 4865 1566 1594 2527 2527 -0.0753511944433285 APIDWGEEY 9 Unmodified _APIDWGEEY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.23779296875 2 540.237647 1078.46074 0.66469 0.00035909 0.097901 5.289E-05 0.76259 0.00041198 540.2377680087257 58.405 0.27672 58.344 58.175 58.452 -0.060719 19 13 2 0 0 0 0.30562 1 31803 31803 16.942 7.5949 1 1328500 2253 4865 1566 1594 2528 2528 -0.0753511944433285 APIDWGEEY 9 Unmodified _APIDWGEEY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.23779296875 2 540.237647 1078.46074 0.64902 0.00035062 0.61777 0.00033374 1.2668 0.00068437 540.237900852716 66.195 0.62356 60.019 59.709 60.332 -6.1757 113 35 4 0 0 0 0.06187 1 43030 43030 42.095 32.747 1 294600000 2254 4865 1566 1594 2529 2529 -0.0753511944433285 APIDWIEEY 9 Unmodified _APIDWIEEY_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1135.5302734375 1 1135.53062 1134.52334 -0.42649 -0.0004843 0.15371 0.00017454 -0.27279 -0.00030976 1135.5301574119437 80.101 0.23502 80.101 79.99 80.225 0 21 13 2 0 0 0 0.047196 1 44484 44484 46.021 29.872 1 859640 2255 3443 1567 1595 2530 2530 -0.038539733761354 APIEKLDDE 9 Unmodified _APIEKLDDE_ 0 0 0 REV__ENST00000504946.5_1_3:123400948-123419770:-|nuORF REV__ENST00000504946.5_1_3:123400948-123419770:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3214721679688 2 515.258579 1028.50261 0.62158 0.00032027 -0.27651 -0.00014247 0.34507 0.0001778 515.7594154735751 73.487 0.19505 73.011 72.871 73.066 -0.47588 11 8 2 0 0 0 0.18882 1 40241 40241 15.847 4.2069 1 609170 + 2256 17380 1568 1596 2531 2531 -0.010505637558026137 APIGHIEI 8 Unmodified _APIGHIEI_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.2453918457031 2 425.245078 848.475603 0.25989 0.00011052 0.66421 0.00028245 0.92409 0.00039297 425.24541367194234 61.117 0.43725 61.117 60.838 61.275 0 41 18 4 0 0 0 0.44122 1 34071 34071 40.449 0 1 1795400 + 2257 19013 1569 1597 2532 2532 0.04530417214323279 APIGHIEI 8 Unmodified _APIGHIEI_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2455749511719 2 425.245078 848.475603 0.85744 0.00036462 0.35116 0.00014933 1.2086 0.00051395 425.24538432377096 66.386 0.33936 60.21 60.009 60.349 -6.1757 25 18 2 0 0 0 0.19755 1 43251 43251 70.865 3.8292 1 8953800 + 2258 19013 1569 1597 2533 2533 0.04530417214323279 APIGHIEI 8 Unmodified _APIGHIEI_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 425.245078 848.475603 0.25989 0.00011052 0.66421 0.00028245 0.92409 0.00039297 425.24541367194234 61.117 0.43725 61.117 60.838 61.275 0 0.078158 0.00016472 NaN 40.449 41 18 4 NaN NaN NaN NaN 0 NaN NaN 0 1795400 + 2259 19013 1569 1597 0.04530417214323279 APIGHIEI 8 Unmodified _APIGHIEI_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 425.245078 848.475603 -0.15521 -6.6E-05 -0.07017 -2.984E-05 -0.22538 -9.584E-05 425.2451510317504 61.45 0.29541 60.961 60.777 61.072 -0.48932 -0.078158 -0.00045986 NaN 40.449 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1095800 + 2260 19013 1569 1597 0.04530417214323279 APIGPKVPPVQ 11 Unmodified _APIGPKVPPVQ_ 0 0 0 REV__ENSG00000102313|ENST00000218436|ITIH6 REV__ENSG00000102313|ENST00000218436|ITIH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.257080078125 2 551.834591 1101.65463 0.20625 0.00011382 -3.2703 -0.0018047 -3.064 -0.0016908 551.8325853948462 73.169 0.35267 73.21 73.029 73.381 0.041725 24 16 2 0 0 0 0.27972 1 40341 40341 18.146 5.9057 1 2996100 + 2261 18233 1570 1598 2534 2534 0.10786881782405544 APIICSKCEF 10 Unmodified _APIICSKCEF_ 0 0 0 ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7957153320312 2 555.769745 1109.52494 0.94287 0.00052402 -1.2883 -0.00071599 -0.34542 -0.00019197 556.2711833469564 73.806 0.09021 67.63 67.569 67.66 -6.1757 5 4 2 0 0 0 0.22667 1 48268 48268 15.847 0 1 8706800 2262 1345 1571 1599 2535 2535 -0.02544378883385434 APIISAEKA 9 Unmodified _APIISAEKA_ 0 0 0 ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8 ENSG00000183785|ENST00000330423|TUBA8 ENSG00000183785|ENST00000330423|TUBA8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2635498046875 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 20.131 1 20.159 19.659 20.659 0.028357 0 0 0 0.84892 1 10180 10180 1.6526 0.17072 1 2263 9198 1572 1600 2536 2536 0.05906669040223278 APIKGQHIQG 10 Unmodified _APIKGQHIQG_ 0 0 0 REV__nc|ENSG00000257198|Q63HN1|SPATA31F2P REV__nc|ENSG00000257198|Q63HN1|SPATA31F2P MSMS AL20221201_MKP_PDAC_01 4 350.2008056640625 3 350.201452 1047.58253 NaN NaN NaN NaN NaN NaN NaN 14.573 1 12.07 11.57 12.57 -2.5029 0 0 0 0.8671 1 7411 7411 5.4027 0.87384 1 + 2264 24214 1573 1601 2537 2537 0.060639674286903755 APIKKKLQN 9 Unmodified _APIKKKLQN_ 0 0 0 REV__ENST00000234170.9_1_2:37455980-37456022:-|nuORF REV__ENST00000234170.9_1_2:37455980-37456022:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3352661132812 2 520.334759 1038.65496 1.6691 0.00086847 -1.4618 -0.00076065 0.20721 0.00010782 520.3339396448374 104.08 0.07843 97.902 97.856 97.935 -6.1757 41 23 2 0 0 0 0.58865 1 69709 69709 2.0598 0.21551 1 5323300 + 2265 24824 1574 1602 2538 2538 0.13718301502285613 APIKVFNTY 9 Unmodified _APIKVFNTY_ 0 0 0 nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7926635742188 2 526.792392 1051.57023 0.52605 0.00027712 -0.18553 -9.7736E-05 0.34052 0.00017938 526.7918750596176 49.37 0.43209 49.326 49.004 49.436 -0.04369 58 20 4 0 0 0 0.0082661 1 26638 26638 92.491 64.005 1 15665000 2266 6593 1575 1603 2539 2539 0.046509309656585174 APIKVFNTY 9 Unmodified _APIKVFNTY_ 0 0 0 nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.79296875 2 526.792392 1051.57023 1.1716 0.0006172 0.51599 0.00027182 1.6876 0.00088902 526.79254270792 55.244 0.7168 49.323 48.921 49.638 -5.9211 92 44 3 0 0 0 0.010818 2 35135 34999;35135 78.149 45.844 1 70720000 2267 6593 1575 1603 2540;2541 2541 0.046509309656585174 APIKVVVNY 9 Unmodified _APIKVVVNY_ 0 0 0 REV__ENSG00000173157|ENST00000389420|ADAMTS20 REV__ENSG00000173157|ENST00000389420|ADAMTS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.8034057617188 2 501.80276 1001.59097 0.51184 0.00025684 -0.089465 -4.4894E-05 0.42237 0.00021195 501.8023202754781 17.427 0.11681 14.841 14.736 14.853 -2.5866 25 16 2 0 0 0 0.2143 1 9087 9087 21.747 5.8995 1 2347700 + 2268 22707 1576 1604 2542 2542 0.09023521345329755 APILKRAL 8 Unmodified _APILKRAL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000143093|ENST00000369795|STRIP1;ENSG00000128578|ENST00000249344|STRIP2 ENSG00000143093|ENST00000369795|STRIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2999267578125 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 29.576 1 29.606 29.106 30.106 0.030106 0 0 0 0.44807 1 15442 15442 46.921 12.734 1 2269 5461;4070 1577 1605 2543 2543 0.14075262273365752 APILKRAL 8 Unmodified _APILKRAL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000143093|ENST00000369795|STRIP1;ENSG00000128578|ENST00000249344|STRIP2 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2998962402344 2 441.300188 880.585822 0.93015 0.00041048 -0.41896 -0.00018488 0.5112 0.00022559 441.2999784287611 33.222 0.2821 29.366 29.281 29.563 -3.8562 21 16 2 0 0 0 0.21786 1 19020 19020 67.035 17.366 1 15503000 2270 5461;4070 1577 1605 2544 2544 0.14075262273365752 APINEVARF 9 Unmodified _APINEVARF_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7804260253906 2 508.779816 1015.54508 0.6934 0.00035279 -0.55169 -0.00028069 0.14172 7.2103E-05 508.77944528415657 47.461 0.39592 47.461 47.269 47.665 0 32 17 3 0 0 0 0.047788 2 25966 25920;25966 45.7 21.679 1 5448500 2271 7311 1578 1606 2545;2546 2546 0.03792876163083747 APINEVARF 9 Unmodified _APINEVARF_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7801818847656 2 508.779816 1015.54508 0.33378 0.00016982 -0.21725 -0.00011053 0.11653 5.9288E-05 508.77996128429686 47.658 0.41035 47.305 47.064 47.474 -0.3526 28 19 2 0 0 0 0.078314 1 25561 25561 38.176 9.094 1 4690700 2272 7311 1578 1606 2547 2547 0.03792876163083747 APINEVARF 9 Unmodified _APINEVARF_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7809448242188 2 508.779816 1015.54508 0.55295 0.00028133 -0.77213 -0.00039284 -0.21918 -0.00011151 508.77953629233264 53.13 0.32226 47.326 47.159 47.481 -5.8042 26 18 2 0 0 0 0.0082475 2 33632 33504;33632 96.367 54.679 1 22689000 2273 7311 1578 1606 2548;2549 2549 0.03792876163083747 APIPGSPLY 9 Unmodified _APIPGSPLY_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2528381347656 2 457.752736 913.490919 0.23734 0.00010864 -0.54622 -0.00025003 -0.30888 -0.00014139 457.7525784872449 57.885 0.33064 57.396 57.267 57.598 -0.48974 26 15 2 0 0 0 0.068777 1 31463 31463 40.449 6.3461 1 2406600 2274 2616 1579 1607 2550 2550 0.03071284011514308 APIPGSPLY 9 Unmodified _APIPGSPLY_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 915.5028686523438 1 914.498195 913.490919 0.018676 1.7079E-05 -0.66636 -0.00060938 -0.64768 -0.00059231 914.4971634178432 57.885 0.20231 57.396 57.331 57.533 -0.48974 13 9 2 0 0 0 0.28047 1 31489 31489 18.135 2.3668 1 1231100 2275 2616 1579 1607 2551 2551 0.03071284011514308 APIPGSPLY 9 Unmodified _APIPGSPLY_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7531433105469 2 457.752736 913.490919 0.63052 0.00028862 0.86503 0.00039597 1.4955 0.00068459 457.75294956209785 65.162 0.44842 58.986 58.787 59.236 -6.1757 40 24 2 0 0 0 0.0089973 2 42356 42220;42356 86.121 19.086 1 18446000 2276 2616 1579 1607 2552;2553 2553 0.03071284011514308 APIPGSPLY 9 Unmodified _APIPGSPLY_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.4972534179688 1 914.498195 913.490919 0.14895 0.00013621 0.91542 0.00083715 1.0644 0.00097336 914.4983967289337 65.187 0.2666 59.012 58.917 59.184 -6.1757 17 14 2 0 0 0 0.0021514 3 42363 42230;42299;42363 131.3 41.871 1 6109000 2277 2616 1579 1607 2554;2555;2556 2556 0.03071284011514308 APIPHDGNLY 10 Unmodified _APIPHDGNLY_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000522843.5_1_8:59477592-59488665:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7744750976562 2 548.774731 1095.53491 0.40837 0.00022411 0.65406 0.00035893 1.0624 0.00058304 548.7747661345045 38.14 0.36272 38.14 37.925 38.288 0 53 19 4 0 0 0 0.0072789 2 20377 20268;20377 92.653 52.696 1 10047000 2278 4949 1580 1608 2557;2558 2558 -0.009037315621299058 APIQGNREEL 10 Unmodified _APIQGNREEL_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;ENST00000531041.1_1_11:65819855-65820217:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7957153320312 2 563.796195 1125.57784 -0.39046 -0.00022014 -0.22667 -0.00012779 -0.61713 -0.00034794 563.7961805731518 27.171 0.15981 27.171 27.055 27.215 0 12 7 2 0 0 0 0.1711 1 13981 13981 49.527 9.5775 1 2197200 2279 1469 1581 1609 2559 2559 0.020070384952759923 APIQVFSTY 9 Unmodified _APIQVFSTY_ 0 0 0 ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.268310546875 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 66.34 1 65.856 65.356 66.356 -0.48323 0 0 0 0.23581 1 36223 36223 28.487 12.64 1 2280 2608 1582 1610 2560 2560 0.011666516946661432 APIRCVEY 8 Carbamidomethyl (C) _APIRC(Carbamidomethyl (C))VEY_ APIRC(1)VEY APIRC(50)VEY 0 1 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2521057128906 2 504.252577 1006.4906 0.81252 0.00040971 -0.50386 -0.00025407 0.30866 0.00015564 504.25224243787545 35.576 0.35249 31.383 31.188 31.541 -4.1928 37 21 2 0 0 0 0.34916 2 20577 20577;20712 49.933 26.785 1 29035000 2281 6327 1583 1611 2561;2562 2561 624 -0.012384589799808055 APIRPDIVNF 10 Unmodified _APIRPDIVNF_ 0 0 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.3218994140625 2 571.321848 1140.62914 -0.17995 -0.00010281 0.17251 9.8558E-05 -0.0074374 -4.2492E-06 571.3219105117688 61.185 0.36403 60.696 60.516 60.88 -0.48932 50 17 4 0 0 0 0.14688 1 33288 33288 40.239 23.126 1 25721000 2282 8421 1584 1612 2563 2563 0.0644540725998013 APIRPDIVNF 10 Unmodified _APIRPDIVNF_ 0 0 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3226928710938 2 571.321848 1140.62914 0.2991 0.00017088 0.70216 0.00040116 1.0013 0.00057204 571.3222315132331 60.79 0.29286 60.746 60.613 60.906 -0.04351 24 14 2 0 0 0 0.17253 1 33132 33132 37.075 19.962 1 7565700 2283 8421 1584 1612 2564 2564 0.0644540725998013 APIRPDIVNF 10 Unmodified _APIRPDIVNF_ 0 0 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3226928710938 2 571.321848 1140.62914 0.80822 0.00046176 0.51023 0.0002915 1.3184 0.00075326 571.3221848646256 67.518 0.4752 61.342 61.071 61.546 -6.1757 42 26 2 0 0 0 0.17253 1 43921 43921 37.075 18.928 1 18441000 2284 8421 1584 1612 2565 2565 0.0644540725998013 APIRPDIVNF 10 Unmodified _APIRPDIVNF_ 0 0 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.2949829101562 2 571.321848 1140.62914 0.65352 0.00037337 0.25468 0.00014551 0.9082 0.00051888 571.3218772878057 66.853 0.61336 60.678 60.349 60.962 -6.1757 85 34 3 0 0 0 0.21985 1 43296 43296 18.373 4.467 1 59232000 2285 8421 1584 1612 2566 2566 0.0644540725998013 APIRSVTY 8 Unmodified _APIRSVTY_ 0 0 0 ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7560424804688 2 453.75581 905.497067 -0.14633 -6.6399E-05 -0.50817 -0.00023059 -0.6545 -0.00029698 453.75570190012417 29.742 0.16161 29.742 29.643 29.804 0 11 8 2 0 0 0 0.36898 1 15420 15420 47.749 22.349 1 1864600 2286 5922 1585 1613 2567 2567 0.040538022430382625 APIRSVTY 8 Unmodified _APIRSVTY_ 0 0 0 ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7552185058594 2 453.75581 905.497067 1.2765 0.00057923 -0.63818 -0.00028958 0.63833 0.00028965 453.7554294120904 33.579 0.33585 29.593 29.469 29.805 -3.9853 32 18 2 0 0 0 0.20424 2 19255 19255;19385 69.105 29.148 1 18576000 2287 5922 1585 1613 2568;2569 2568 0.040538022430382625 APIRVLLAF 9 Unmodified _APIRVLLAF_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656349-34659376:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MSMS AL20221201_MKP_PDAC_01 4 500.3221435546875 2 500.32112 998.627687 NaN NaN NaN NaN NaN NaN NaN 98.731 1 92.555 92.055 93.055 -6.1757 0 0 0 0.39043 1 65533 65533 20.454 2.3186 1 2288 8595 1586 1614 2570 2570 0.1283181796189865 APISEPIEWKY 11 Unmodified _APISEPIEWKY_ 0 0 0 ENST00000527227.1_1_11:71191827-71192067:+|nuORF;nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1 ENST00000527227.1_1_11:71191827-71192067:+|nuORF ENST00000527227.1_1_11:71191827-71192067:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8466796875 2 666.845353 1331.67615 0.63913 0.0004262 0.60695 0.00040474 1.2461 0.00083094 666.8457650661891 62.103 0.19641 61.615 61.529 61.726 -0.48764 21 8 4 0 0 0 0.08701 1 33846 33846 43.982 34.599 1 2197900 2289 8265 1587 1615 2571 2571 0.023582220204843907 APITVDIEY 9 Unmodified _APITVDIEY_ 0 0 0 nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7671203613281 2 510.76604 1019.51753 0.66495 0.00033963 -1.6745 -0.00085529 -1.0096 -0.00051566 510.76570370654895 72.808 0.39672 66.633 66.393 66.79 -6.1757 25 20 2 0 0 0 0.03327 1 47679 47679 53.576 30.427 1 13241000 2290 475 1588 1616 2572 2572 0.008549281121759122 APITYGTV 8 Unmodified _APITYGTV_ 0 0 0 nc|ENSG00000204930|A6H8Z2-3|FAM221B nc|ENSG00000204930|A6H8Z2-3|FAM221B nc|ENSG00000204930|A6H8Z2-3|FAM221B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.4412231445312 1 821.440346 820.433069 0.14389 0.0001182 0.21451 0.00017621 0.3584 0.0002944 821.4406077120912 52.826 0.30442 52.826 52.678 52.982 0 23 13 2 0 0 0 0.44122 1 29211 29211 40.449 0 1 2340500 2291 16508 1589 1617 2573 2573 0.015670220861125017 APIVAHLWEY 10 Unmodified _APIVAHLWEY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8161010742188 2 599.816399 1197.61824 0.18059 0.00010832 -0.32945 -0.00019761 -0.14887 -8.9292E-05 599.8161328588105 69.634 0.31036 69.664 69.554 69.864 0.030922 34 15 3 0 0 0 0.14688 1 38289 38289 57.471 48.088 1 4539000 2292 2701 1590 1618 2574 2574 0.027340048857240618 APIVAHLWEY 10 Unmodified _APIVAHLWEY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8175048828125 2 599.816399 1197.61824 -0.53093 -0.00031846 -0.54836 -0.00032892 -1.0793 -0.00064738 599.8167924576574 85.084 0.51968 78.908 78.618 79.138 -6.1757 43 31 2 0 0 0 0.047829 1 55910 55910 81.613 58.955 1 16346000 2293 2701 1590 1618 2575 2575 0.027340048857240618 APIWDKLGETY 11 Unmodified _APIWDKLGETY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.8306884765625 2 646.829703 1291.64485 0.21292 0.00013772 0.091232 5.9011E-05 0.30415 0.00019673 646.829734397725 63.623 0.41263 63.137 62.905 63.318 -0.48617 65 18 5 0 0 0 0.00028183 3 34629 34621;34629;34727 91.085 72.215 1 33385000 2294 9390 1591 1619 2576;2577;2578 2577 0.010696489863676106 APIWDKLGETY 11 Unmodified _APIWDKLGETY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.8294677734375 2 646.829703 1291.64485 0.53152 0.0003438 -1.7308 -0.0011195 -1.1993 -0.00077572 646.8274083455844 63.151 0.33022 63.13 62.948 63.278 -0.021614 44 16 5 0 0 0 0.0039716 1 34565 34565 77.049 51.649 1 8403600 2295 9390 1591 1619 2579 2579 0.010696489863676106 APIWDKLGETY 11 Unmodified _APIWDKLGETY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.830078125 2 646.829703 1291.64485 0.93383 0.00060403 0.0051341 3.3209E-06 0.93897 0.00060735 646.8295790461509 72.023 0.56615 65.847 65.537 66.104 -6.1757 55 30 3 0 0 0 5.665699999999999E-21 3 47232 46952;47099;47232 150.62 120.78 1 36192000 2296 9390 1591 1619 2580;2581;2582 2582 0.010696489863676106 APIWDKLGETY 11 Unmodified _APIWDKLGETY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8302612304688 2 646.829703 1291.64485 0.76302 0.00049355 -0.20535 -0.00013283 0.55767 0.00036072 646.8295193601499 72.925 1.258 66.749 66.024 67.282 -6.1757 167 63 3 0 0 0 1.7696999999999998E-28 6 47472 47354;47472;47592;47711;47828;47950 162.31 138.51 1 64295000 2297 9390 1591 1619 2583;2584;2585;2586;2587;2588 2584 0.010696489863676106 APIWDKLGETY 11 Unmodified _APIWDKLGETY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 646.829703 1291.64485 -0.037587 -2.4312E-05 1.5995 0.0010346 1.5619 0.0010103 646.8307939285642 63.072 0.46833 63.072 62.727 63.195 0 -0.040849 0.0017037 NaN 91.085 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3118000 2298 9390 1591 1619 0.010696489863676106 APIWICRKERW 11 Unmodified _APIWICRKERW_ 0 0 0 REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF REV__ENST00000427383.6_2_11:125495702-125499145:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 729.39697265625 2 729.395356 1456.77616 NaN NaN NaN NaN NaN NaN NaN 87.651 1 87.705 87.205 88.205 0.053352 0 0 0 0.9428 1 48747 48747 1.4819 1.0812 1 + 2299 26922 1592 1620 2589 2589 0.06604180873273435 APIYADLSLKY 11 Unmodified _APIYADLSLKY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3424682617188 2 627.342446 1252.67034 0.2156 0.00013525 -1.0092 -0.00063313 -0.79363 -0.00049788 627.3418347234514 67.168 0.23363 66.685 66.547 66.78 -0.48218 18 10 2 0 0 0 0.0025724 1 36686 36686 79.427 62.314 1 2735300 2300 10445 1593 1621 2590 2590 0.05411123508815763 APIYADLSLKY 11 Unmodified _APIYADLSLKY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.341796875 2 627.342446 1252.67034 0.68988 0.00043279 -0.26043 -0.00016338 0.42944 0.00026941 627.3423209051075 75.088 0.64417 68.912 68.64 69.284 -6.1757 55 34 2 0 0 0 5.2027E-06 3 49052 49052;49177;49322 94.909 67.28 1 14195000 2301 10445 1593 1621 2591;2592;2593 2591 0.05411123508815763 APIYQICSR 9 Unmodified _APIYQICSR_ 0 0 0 REV__nc|ENSG00000071967|Q53TN4-2|CYBRD1 REV__nc|ENSG00000071967|Q53TN4-2|CYBRD1 MSMS AL20221201_MKP_PDAC_01 4 525.770751953125 2 525.773677 1049.5328 NaN NaN NaN NaN NaN NaN NaN 46.923 1 41.842 41.342 42.342 -5.0805 0 0 0 0.34649 1 29065 29065 22.736 1.8651 1 + 2302 29505 1594 1622 2594 2594 0.010015164283913691 APKAVLNR 8 Unmodified _APKAVLNR_ 0 0 0 ENSG00000163866|ENST00000521580|SMIM12 ENSG00000163866|ENST00000521580|SMIM12 ENSG00000163866|ENST00000521580|SMIM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.7714233398438 2 434.771794 867.529036 0.25357 0.00011024 -0.63363 -0.00027549 -0.38007 -0.00016524 434.77143730308245 18.24 0.20291 18.246 18.152 18.355 0.0060463 43 19 3 0 0 0 0.74163 1 9203 9203 13.508 0 1 11797000 2303 7084 1595 1623 2595 2595 0.08997214716828239 APKGARAL 8 Unmodified _APKGARAL_ 0 0 0 REV__ENST00000594089.1_1_11:64546591-64546756:+|nuORF REV__ENST00000594089.1_1_11:64546591-64546756:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.5476989746094 2 392.245412 782.476272 0.39319 0.00015423 0.11373 4.4611E-05 0.50692 0.00019884 392.24543031901055 23.039 0.33916 20.261 20.058 20.397 -2.7784 46 22 3 0 0 0 8.7369 1 12358 12358 5.7604 2.8712 1 23080000 + 2304 29200 1596 1624 2596 2596 0.076332566540259 APKGPSRESVV 11 Unmodified _APKGPSRESVV_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000536042.1_1_13:43543884-43566301:-|nuORF;ENST00000540470.5_1_13:43544616-43566301:-|nuORF;ENST00000476830.6_1_13:43565317-43566301:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2123718261719 3 376.212017 1125.61422 -0.53526 -0.00020137 -0.53759 -0.00020225 -1.0729 -0.00040362 376.2118622643007 18.429 0.13569 18.429 18.357 18.492 0 31 18 2 0 0 0 0.69155 1 9155 9155 5.0475 1.1031 1 1262300 2305 16196 1597 1625 2597 2597 0.0564391539198823 APKLGVAL 8 Unmodified _APKLGVAL_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.7528686523438 2 384.752539 767.490525 0.42975 0.00016535 0.20359 7.8333E-05 0.63335 0.00024368 384.75264850053713 48.422 0.21727 48.05 47.925 48.143 -0.37172 21 10 3 0 0 0 0.50673 1 25990 25990 34.102 3.8776 1 3336500 2306 10774 1598 1626 2598 2598 0.0974790908230716 APKLGVAL 8 Unmodified _APKLGVAL_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MSMS AL20221201_MKP_PDAC_01 4 384.7524719238281 2 384.752539 767.490525 NaN NaN NaN NaN NaN NaN NaN 53.552 1 47.747 47.247 48.247 -5.8042 0 0 0 0.4637 1 33859 33859 44.407 19.733 1 2307 10774 1598 1626 2599 2599 0.0974790908230716 APKLRLQK 8 Unmodified _APKLRLQK_ 0 0 0 REV__ENST00000566066.5_1_16:29837369-29841846:+|nuORF REV__ENST00000566066.5_1_16:29837369-29841846:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.3173217773438 2 477.316369 952.618185 1.6202 0.00077337 1.0931 0.00052174 2.7133 0.0012951 477.3174703988483 103.57 0.20991 97.39 97.309 97.519 -6.1757 93 46 3 0 0 0 0.80722 1 69427 69427 2.3027 1.5091 1 16643000 + 2308 28918 1599 1627 2600 2600 0.13998049676354185 APKRPPLAF 9 Unmodified _APKRPPLAF_ 0 0 0 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8029479980469 2 498.803094 995.591636 0.12419 6.1947E-05 0.13272 6.6202E-05 0.25691 0.00012815 498.803138651914 38.209 0.28465 38.226 38.071 38.355 0.01704 27 12 3 0 0 0 0.026094 1 20296 20296 57.471 44.94 1 4063300 2309 16042 1600 1628 2601 2601 0.09366360785031702 APKRPPLAF 9 Unmodified _APKRPPLAF_ 0 0 0 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.2468566894531 2 498.803094 995.591636 1.3653 0.00068099 -0.37581 -0.00018746 0.98945 0.00049354 498.80275246973144 41.613 0.36868 37.006 36.868 37.237 -4.6079 42 23 2 0 0 0 0.16229 1 25055 25055 18.135 13.806 1 7782000 2310 16042 1600 1628 2602 2602 0.09366360785031702 APKRPPSAF 9 Unmodified _APKRPPSAF_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1 ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.775146484375 2 485.777077 969.5396 -0.22447 -0.00010904 0.83557 0.0004059 0.61111 0.00029686 485.77728776342155 21.067 0.1805 21.067 20.988 21.168 0 42 30 2 0 0 0 0.45045 1 10594 10594 10.074 2.1638 1 944340 2311 7138 1601 1629 2603 2603 0.053611973712691 APKRPPSAF 9 Unmodified _APKRPPSAF_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1 ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7771606445312 2 485.777077 969.5396 -0.17996 -8.7422E-05 0.041872 2.034E-05 -0.13809 -6.7081E-05 485.7769956306831 20.973 0.27944 21.001 20.841 21.12 0.028357 22 12 2 0 0 0 0.05483 2 10591 10591;10693 43.772 13.136 1 1631200 2312 7138 1601 1629 2604;2605 2604 0.053611973712691 APKRPPSAF 9 Unmodified _APKRPPSAF_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1 ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7765502929688 2 485.777077 969.5396 0.3058 0.00014855 -1.0409 -0.00050565 -0.73512 -0.0003571 485.7766095468986 20.981 0.38768 20.992 20.759 21.146 0.010553 52 28 3 0 0 0 0.011671 1 10738 10738 75.761 24.906 1 7765300 2313 7138 1601 1629 2606 2606 0.053611973712691 APKRPPSAF 9 Unmodified _APKRPPSAF_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000402555.2_1_6:53100721-53100889:-|nuORF;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENSG00000189403|ENST00000341423|HMGB1 ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7774047851562 2 485.777077 969.5396 0.15769 7.6601E-05 -0.047096 -2.2878E-05 0.11059 5.3722E-05 485.7770314604934 23.161 0.52496 20.382 20.103 20.628 -2.7784 101 42 3 0 0 0 0.0082475 3 12614 12390;12496;12614 92.653 46.632 1 36083000 2314 7138 1601 1629 2607;2608;2609 2609 0.053611973712691 APKRSPAI 8 Unmodified _APKRSPAI_ 0 0 0 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2587585449219 2 420.25852 838.502486 -0.62864 -0.00026419 0.48746 0.00020486 -0.14119 -5.9335E-05 420.25858783211277 17.048 0.12371 17.048 16.999 17.123 0 38 28 2 0 0 0 0.78849 1 8346 8346 9.3474 4.1168 1 795210 2315 5961 1602 1630 2610 2610 0.07677525825499742 APKRSPAI 8 Unmodified _APKRSPAI_ 0 0 0 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2581481933594 2 420.25852 838.502486 -0.55849 -0.00023471 0.77979 0.00032771 0.2213 9.3003E-05 420.25884881153104 17.346 0.12637 17.36 17.298 17.424 0.013865 56 34 2 0 0 0 0.6895 1 8608 8608 18.135 4.2289 1 1893800 2316 5961 1602 1630 2611 2611 0.07677525825499742 APKRSPAI 8 Unmodified _APKRSPAI_ 0 0 0 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2582397460938 2 420.25852 838.502486 0.0032115 1.3496E-06 0.029755 1.2505E-05 0.032966 1.3854E-05 420.2585588859873 17.128 0.14793 17.133 17.045 17.193 0.0050564 20 10 3 0 0 0 0.65867 1 8619 8619 20.871 6.2895 1 1175600 2317 5961 1602 1630 2612 2612 0.07677525825499742 APKRSPAI 8 Unmodified _APKRSPAI_ 0 0 0 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1;nc|ENSG00000148735|Q5SXH7-3|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2592163085938 2 420.25852 838.502486 0.86838 0.00036494 0.4961 0.00020849 1.3645 0.00057343 420.2587027065486 17.868 0.27838 15.282 15.161 15.439 -2.5866 58 22 3 0 0 0 0.64853 1 9433 9433 21.747 5.8995 1 18483000 2318 5961 1602 1630 2613 2613 0.07677525825499742 APKSQIVML 9 Oxidation (M) _APKSQIVM(Oxidation (M))L_ APKSQIVM(1)L APKSQIVM(82)L 0 0 1 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7850341796875 2 501.786253 1001.55795 -0.14453 -7.2522E-05 -0.55884 -0.00028042 -0.70336 -0.00035294 501.786018472913 40.943 0.34132 40.943 40.876 41.218 0 36 23 2 0 0 0 0.009483 2 22149 22035;22149 81.89 39.796 1 8499800 2319 5007 1603 1631 2614;2615 2615 915 0.057235712309761766 APKSQIVML 9 Oxidation (M) _APKSQIVM(Oxidation (M))L_ APKSQIVM(1)L APKSQIVM(63)L 0 0 1 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.787353515625 2 501.786253 1001.55795 -0.27523 -0.00013811 1.0258 0.00051475 0.75061 0.00037665 501.7870280258842 41.314 0.39498 41.011 40.757 41.152 -0.30304 43 18 3 0 0 0 0.020973 2 21783 21783;21889 62.573 35.689 1 6198200 2320 5007 1603 1631 2616;2617 2616 915 0.057235712309761766 APKSQIVML 9 Oxidation (M) _APKSQIVM(Oxidation (M))L_ APKSQIVM(1)L APKSQIVM(72)L 0 0 1 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7866821289062 2 501.786253 1001.55795 0.79785 0.00040035 1.3367 0.00067074 2.1346 0.0010711 501.78708068706277 45.655 0.53248 40.7 40.45 40.983 -4.9549 69 35 2 0 0 0 0.013041 3 27927 27927;28076;28222 71.922 43.749 1 20237000 2321 5007 1603 1631 2618;2619;2620 2618 915 0.057235712309761766 APKSSSGFSL 10 Unmodified _APKSSSGFSL_ 0 0 0 ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.756103515625 2 490.756007 979.497461 0.46428 0.00022785 0.13723 6.7345E-05 0.60151 0.0002952 490.75604333232815 38.498 0.34917 38.498 38.376 38.725 0 56 19 4 0 0 0 0.0069983 2 20516 20516;20622 93.166 27.931 1 22733000 2322 15405 1604 1632 2621;2622 2621 0.006891771722393969 APKSSSGFSL 10 Unmodified _APKSSSGFSL_ 0 0 0 ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7556457519531 2 490.756007 979.497461 0.16684 8.1875E-05 0.035516 1.743E-05 0.20235 9.9305E-05 490.7559732303312 38.712 0.34596 38.426 38.262 38.608 -0.28687 38 16 3 0 0 0 0.0062184 2 20342 20342;20442 94.909 32.336 1 21694000 2323 15405 1604 1632 2623;2624 2623 0.006891771722393969 APKSSSGFSL 10 Unmodified _APKSSSGFSL_ 0 0 0 ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7554626464844 2 490.756007 979.497461 0.3922 0.00019247 -0.60103 -0.00029496 -0.20883 -0.00010249 490.7557587838344 38.336 0.1951 38.353 38.265 38.46 0.01704 15 8 2 0 0 0 0.052718 1 20385 20385 57.249 9.5004 1 3064100 2324 15405 1604 1632 2625 2625 0.006891771722393969 APKSSSGFSL 10 Unmodified _APKSSSGFSL_ 0 0 0 ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF ENST00000565420.5_1_16:18800314-18800410:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7562561035156 2 490.756007 979.497461 0.76389 0.00037489 0.2143 0.00010517 0.97819 0.00048005 490.75587039952126 42.355 0.54427 37.671 37.39 37.934 -4.6846 96 35 3 0 0 0 0.0065755 3 25415 25415;25556;25684 93.938 22.016 1 154860000 2325 15405 1604 1632 2626;2627;2628 2626 0.006891771722393969 APKTEPPGVLV 11 Unmodified _APKTEPPGVLV_ 0 0 0 ENST00000451775.1_1_17:57184315-57184630:+|nuORF ENST00000451775.1_1_17:57184315-57184630:+|nuORF ENST00000451775.1_1_17:57184315-57184630:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.804931640625 2 554.324057 1106.63356 0.25284 0.00014016 0.14001 7.7611E-05 0.39285 0.00021777 554.3236417184642 55.799 0.30788 55.321 55.132 55.44 -0.47798 30 14 3 0 0 0 0.30445 1 30333 30333 8.7454 2.0222 1 10624000 2326 13529 1605 1633 2629 2629 0.08450871682885008 APLAHDLTF 9 Unmodified _APLAHDLTF_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7611083984375 2 492.761092 983.507631 0.59058 0.00029102 0.64452 0.00031759 1.2351 0.00060861 492.76115561510596 53.929 0.28093 53.929 53.77 54.051 0 28 12 3 0 0 0 0.0086629 1 29893 29893 101.72 61.772 1 4284000 2327 10141 1606 1634 2630 2630 0.015217848974543813 APLAHDLTF 9 Unmodified _APLAHDLTF_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7610473632812 2 492.761092 983.507631 0.26745 0.00013179 -0.31731 -0.00015636 -0.049863 -2.4571E-05 492.76087349664505 54.426 0.26228 53.959 53.822 54.084 -0.46664 25 13 2 0 0 0 0.038285 1 29464 29464 50.855 14.728 1 4423600 2328 10141 1606 1634 2631 2631 0.015217848974543813 APLAHDLTF 9 Unmodified _APLAHDLTF_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7620849609375 2 492.761092 983.507631 0.93973 0.00046306 -0.30757 -0.00015156 0.63216 0.0003115 492.7609421363111 60.152 0.37151 54.037 53.902 54.273 -6.1147 29 18 2 0 0 0 0.0077963 1 38691 38691 109.63 61.881 1 21840000 2329 10141 1606 1634 2632 2632 0.015217848974543813 APLAKQQSYQA 11 Unmodified _APLAKQQSYQA_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;ENST00000522802.5_1_8:100396536-100436568:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.216796875 3 402.215539 1203.62479 0.27404 0.00011022 2.4483 0.00098475 2.7224 0.001095 402.21612504243825 15.282 0.15483 12.755 12.648 12.803 -2.5273 32 24 2 0 0 0 0.631 1 7789 7789 9.7643 1.3199 1 3509500 2330 16193 1607 1635 2633 2633 0.031118980464270862 APLALLFW 8 Unmodified _APLALLFW_ 0 0 0 ENST00000435067.2_1_13:46275175-46275232:-|nuORF ENST00000435067.2_1_13:46275175-46275232:-|nuORF ENST00000435067.2_1_13:46275175-46275232:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.77783203125 2 465.776014 929.537475 0.48691 0.00022679 2.6006 0.0012113 3.0875 0.0014381 465.7773722950202 83.231 0.28104 83.294 83.102 83.383 0.063171 22 10 3 0 0 0 0.70131 1 46017 46017 17.087 5.9721 1 4827900 2331 13308 1608 1636 2634 2634 0.06988768633459586 APLARAAEI 9 Unmodified _APLARAAEI_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2697143554688 2 456.269084 910.523616 -0.044672 -2.0383E-05 0.76538 0.00034922 0.72071 0.00032884 456.26946937955256 41.229 0.22615 40.926 40.82 41.047 -0.30304 16 10 2 0 0 0 0.020973 1 21842 21842 62.573 4.8507 1 2987400 + 2332 18107 1609 1637 2635 2635 0.06477491134353386 APLARAAEI 9 Unmodified _APLARAAEI_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2693176269531 2 456.269084 910.523616 0.66447 0.00030317 -0.036742 -1.6764E-05 0.62772 0.00028641 456.26907053941693 46.096 0.52067 41.142 40.848 41.369 -4.9549 104 34 4 0 0 0 0.032796 2 28427 28427;28567 53.833 4.2785 1 206490000 + 2333 18107 1609 1637 2636;2637 2636 0.06477491134353386 APLARAAEI 9 Unmodified _APLARAAEI_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 456.269084 910.523616 -0.044672 -2.0383E-05 0.76538 0.00034922 0.72071 0.00032884 456.26946937955256 41.229 0.22615 40.926 40.82 41.047 -0.30304 0.0021942 0.00020792 NaN 62.573 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2987400 + 2334 18107 1609 1637 0.06477491134353386 APLARAAEI 9 Unmodified _APLARAAEI_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 456.269084 910.523616 0.55408 0.00025281 -0.51017 -0.00023277 0.043916 2.0037E-05 456.2688662909755 40.924 0.17837 40.922 40.792 40.97 -0.0017929 -0.0021942 -0.00095606 NaN 62.573 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1473600 + 2335 18107 1609 1637 0.06477491134353386 APLARFRDI 9 Unmodified _APLARFRDI_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5425720214844 3 353.541697 1057.60326 2.0247 0.00071583 -0.52615 -0.00018602 1.4986 0.00052981 353.5415443285579 58.811 1.0332 52.736 52.031 53.065 -6.0745 74 56 2 0 0 0 0.10734 1 37765 37765 23.79 0 1 12156000 2336 3194 1610 1638 2638 2638 0.07676557808372309 APLAVFQML 9 Oxidation (M) _APLAVFQM(Oxidation (M))L_ APLAVFQM(1)L APLAVFQM(43)L 0 0 1 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000485869.1_1_2:130940017-130940434:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2761535644531 2 503.275521 1004.53649 0.59262 0.00029825 -1.4447 -0.00072708 -0.85208 -0.00042883 503.274852250637 83.118 0.25331 83.182 83.077 83.33 0.063171 18 9 3 0 0 0 0.058206 1 46015 46015 42.968 19.82 1 3324100 2337 6161 1611 1639 2639 2639 1101 0.03440186202271889 APLAVFQML 9 Unmodified _APLAVFQML_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000485869.1_1_2:130940017-130940434:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 989.5499877929688 1 989.54885 988.541574 1.342 0.0013279 4.0319 0.0039898 5.3739 0.0053177 989.5504370261027 101.03 0.10926 94.852 94.798 94.907 -6.1757 7 5 2 0 0 0 0.054321 1 67744 67744 49.669 24.995 1 9152200 2338 6161 1611 1640 2640 2640 0.0468449006488072 APLAYVPEF 9 Unmodified _APLAYVPEF_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7651062011719 2 503.765843 1005.51713 0.43102 0.00021713 -0.32124 -0.00016183 0.10978 5.5304E-05 503.76565535391785 80.563 0.34738 80.07 79.853 80.201 -0.49247 32 13 3 0 0 0 0.095049 1 44095 44095 34.187 20.679 1 1168000 2339 8441 1612 1641 2641 2641 0.014595531829968422 APLCRFFLYY 10 Unmodified _APLCRFFLYY_ 0 0 0 REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.8275756835938 2 646.828452 1291.64235 -1.1605 -0.00075065 -1.572 -0.0010168 -2.7325 -0.0017674 646.8279953580555 32.716 0.17181 32.716 32.618 32.79 0 13 8 2 0 0 0 0.31022 1 17121 17121 26.884 3.0939 1 2765300 + 2340 26440 1613 1642 2642 2642 0.008195220477546172 APLCRFFLYY 10 Unmodified _APLCRFFLYY_ 0 0 0 REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF REV__ENST00000394249.7_1_15:91509410-91509812:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 646.828452 1291.64235 -1.1605 -0.00075065 -1.572 -0.0010168 -2.7325 -0.0017674 646.8279953580555 32.716 0.17181 32.716 32.618 32.79 0 0 0 NaN 26.884 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2765300 + 2341 26440 1613 1642 0.008195220477546172 APLDFEAHPAY 11 Unmodified _APLDFEAHPAY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7933959960938 2 615.793121 1229.57169 NaN NaN NaN NaN NaN NaN NaN 51.682 1 51.682 51.182 52.182 0 0 0 0 0.035383 1 28558 28558 82.529 65.416 1 2342 1378 1614 1643 2643 2643 -0.03391479736251313 APLDFEAHPAY 11 Unmodified _APLDFEAHPAY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.7937622070312 2 615.793121 1229.57169 NaN NaN NaN NaN NaN NaN NaN 52.305 1 51.871 51.371 52.371 -0.43367 0 0 0 0.035383 1 28246 28246 82.529 49.744 1 2343 1378 1614 1643 2644 2644 -0.03391479736251313 APLDLAVAY 9 Unmodified _APLDLAVAY_ 0 0 0 ENSG00000168890|ENST00000334462|TMEM150A;ENST00000431593.5_1_2:85826201-85828246:-|nuORF;nc|ENSG00000168890|Q86TG1-2|TMEM150A;ENST00000444380.5_1_2:85826201-85828277:-|nuORF ENSG00000168890|ENST00000334462|TMEM150A ENSG00000168890|ENST00000334462|TMEM150A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.51171875 1 932.50876 931.501483 0.1619 0.00015097 2.0949 0.0019535 2.2568 0.0021045 932.5105388274235 70.531 0.39302 70.531 70.333 70.726 0 36 17 3 0 0 0 0.2143 1 39348 39348 21.747 1.293 1 2121100 2344 7809 1615 1644 2645 2645 0.032992666659424685 APLDSIHSL 9 Unmodified _APLDSIHSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7601318359375 2 476.758549 951.502546 0.23509 0.00011208 0.39351 0.00018761 0.6286 0.00029969 476.7590764855123 49.077 0.44281 49.077 48.874 49.316 0 54 21 4 0 0 0 0.0082281 2 26923 26923;27036 92.822 48.415 1 46050000 2345 7904 1616 1645 2646;2647 2646 0.024854810348642786 APLDSIHSL 9 Unmodified _APLDSIHSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7597045898438 2 476.758549 951.502546 0.72297 0.00034468 1.1167 0.00053238 1.8396 0.00087706 476.7588970937552 49.384 0.25737 48.992 48.8 49.057 -0.3923 28 12 4 0 0 0 0.038285 1 26517 26517 50.855 27.707 1 5530000 2346 7904 1616 1645 2648 2648 0.024854810348642786 APLDSIHSL 9 Unmodified _APLDSIHSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7593078613281 2 476.758549 951.502546 1.1 0.00052443 -0.85403 -0.00040717 0.24595 0.00011726 476.75791859840933 55.552 0.24654 49.631 49.573 49.819 -5.9211 28 14 2 0 0 0 0.026094 1 35363 35363 57.471 28.985 1 83703000 2347 7904 1616 1645 2649 2649 0.024854810348642786 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2606811523438 2 488.260925 974.507297 0.47895 0.00023385 -0.29765 -0.00014533 0.18131 8.8524E-05 488.26053087792945 54.844 0.38767 54.844 54.689 55.077 0 43 16 4 0 0 0 0.038285 2 30420 30420;30523 50.855 25.456 1 33559000 2348 8367 1617 1646 2650;2651 2650 0.01902365177613774 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.5143432617188 1 975.514573 974.507297 0.40031 0.00039051 -0.46734 -0.0004559 -0.06703 -6.5388E-05 975.5139617981414 54.834 0.36459 54.834 54.689 55.054 0 38 15 3 0 0 0 0.00856 1 30522 30522 100.37 36.135 1 16027000 2349 8367 1617 1646 2652 2652 0.01902365177613774 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5152587890625 1 975.514573 974.507297 0.35513 0.00034643 -0.71762 -0.00070005 -0.36249 -0.00035361 975.5143098690811 55.447 0.20779 54.969 54.861 55.069 -0.47798 13 9 2 0 0 0 0.03568 1 30081 30081 52.268 30.522 1 979650 2350 8367 1617 1646 2653 2653 0.01902365177613774 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2614135742188 2 488.260925 974.507297 0.60343 0.00029463 -0.43091 -0.0002104 0.17251 8.4232E-05 488.260934639525 55.453 0.27142 54.975 54.841 55.112 -0.47798 23 12 2 0 0 0 0.16226 1 30121 30121 26.884 8.7487 1 2730500 2351 8367 1617 1646 2654 2654 0.01902365177613774 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2633972167969 2 488.260925 974.507297 1.8057 0.00088163 -0.043415 -2.1198E-05 1.7622 0.00086044 488.2609473897392 62.858 0.45445 56.682 56.442 56.896 -6.1757 55 22 3 0 0 0 0.031062 2 40489 40489;40620 54.774 29.108 1 81477000 2352 8367 1617 1646 2655;2656 2655 0.01902365177613774 APLEAIQAY 9 Unmodified _APLEAIQAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.5150756835938 1 975.514573 974.507297 1.6201 0.0015805 0.057674 5.6262E-05 1.6778 0.0016367 975.51474846013 62.844 0.37502 56.669 56.482 56.857 -6.1757 36 18 3 0 0 0 0.0036082 2 40495 40495;40617 123.45 49.028 1 25395000 2353 8367 1617 1646 2657;2658 2657 0.01902365177613774 APLEDEATL 9 Unmodified _APLEDEATL_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4725341796875 1 958.472768 957.465492 0.62791 0.00060184 -2.3506 -0.002253 -1.7227 -0.0016512 958.4705390815681 46.166 0.37373 46.166 45.939 46.313 0 31 17 3 0 0 0 0.016184 3 25151 25151;25268;25278 67.344 22.937 1 5142300 2354 6038 1618 1647 2659;2660;2661 2659 -0.014942353015612753 APLEEARQF 9 Unmodified _APLEEARQF_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.774658203125 2 530.774731 1059.53491 0.65538 0.00034786 -0.61431 -0.00032606 0.041066 2.1797E-05 530.7743930089161 36.251 0.23825 36.251 36.131 36.369 0 25 11 3 0 0 0 0.013041 1 19212 19212 71.922 37.521 1 24153000 2355 5590 1619 1648 2662 2662 0.007522684378500344 APLEEARQF 9 Unmodified _APLEEARQF_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7772216796875 2 530.774731 1059.53491 0.41898 0.00022239 0.20397 0.00010826 0.62295 0.00033065 530.7749150357724 41.28 0.41574 36.672 36.401 36.817 -4.6079 41 25 2 0 0 0 0.0082353 2 24684 24684;24826 96.111 48.362 1 30273000 2356 5590 1619 1648 2663;2664 2663 0.007522684378500344 APLEGEDWP 9 Unmodified _APLEGEDWP_ 0 0 0 REV__ENST00000525284.5_1_15:101598322-101602587:+|nuORF REV__ENST00000525284.5_1_15:101598322-101602587:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2349853515625 2 507.232364 1012.45018 NaN NaN NaN NaN NaN NaN NaN 54.919 1 54.919 54.419 55.419 0 0 0 0 0.50124 1 30500 30500 15.847 1.2655 1 + 2357 28350 1620 1649 2665 2665 -0.05555102098765019 APLEKPIVL 9 Unmodified _APLEKPIVL_ 0 0 0 ENST00000595700.5_1_19:44242246-44254893:-|nuORF;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000595700.5_1_19:44242246-44254893:-|nuORF ENST00000595700.5_1_19:44242246-44254893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.3132019042969 2 490.312961 978.611368 0.66268 0.00032492 -0.43895 -0.00021522 0.22373 0.0001097 490.3126190357606 54.013 0.25336 54.013 53.858 54.111 0 22 11 3 0 0 0 0.028475 1 29928 29928 56.177 22.075 1 2880900 2358 2362 1621 1650 2666 2666 0.1212069200513497 APLEKPIVL 9 Unmodified _APLEKPIVL_ 0 0 0 ENST00000595700.5_1_19:44242246-44254893:-|nuORF;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000595700.5_1_19:44242246-44254893:-|nuORF ENST00000595700.5_1_19:44242246-44254893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.3127136230469 2 490.312961 978.611368 0.23039 0.00011296 1.0258 0.00050296 1.2562 0.00061593 490.31346591531724 54.433 0.16311 53.966 53.921 54.084 -0.46664 12 8 2 0 0 0 0.047196 1 29525 29525 46.021 11.919 1 2129100 2359 2362 1621 1650 2667 2667 0.1212069200513497 APLEKPIVL 9 Unmodified _APLEKPIVL_ 0 0 0 ENST00000595700.5_1_19:44242246-44254893:-|nuORF;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENSG00000105771|ENST00000270066|SMG9 ENST00000595700.5_1_19:44242246-44254893:-|nuORF ENST00000595700.5_1_19:44242246-44254893:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.3127746582031 2 490.312961 978.611368 NaN NaN NaN NaN NaN NaN NaN 59.895 1 53.78 53.28 54.28 -6.1147 0 0 0 0.076083 1 38505 38505 49.554 17.249 1 2360 2362 1621 1650 2668 2668 0.1212069200513497 APLETRPPL 9 Unmodified _APLETRPPL_ 0 0 0 REV__ENSG00000179431|ENST00000317811|FJX1 REV__ENSG00000179431|ENST00000317811|FJX1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7618408203125 2 497.290017 992.565481 1.5214 0.0007566 0.41305 0.0002054 1.9345 0.000962 497.29054577980537 79.41 0.36803 73.234 73.132 73.5 -6.1757 36 21 2 0 0 0 0.19613 1 52224 52224 12.532 0 1 10267000 + 2361 23098 1622 1651 2669 2669 0.06890046822900331 APLEVTEGF 9 Unmodified _APLEVTEGF_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7456970214844 2 481.745108 961.475663 0.62189 0.00029959 -0.10866 -5.2347E-05 0.51323 0.00024725 481.7453465649195 60.594 0.31631 60.594 60.451 60.767 0 21 13 2 0 0 0 0.39863 1 33797 33797 12.532 4.6214 1 584490 2362 943 1623 1652 2670 2670 -0.006616275763235535 APLEYGFN 8 Unmodified _APLEYGFN_ 0 0 0 REV__nc|ENSG00000160460|Q9H254-2|SPTBN4 REV__nc|ENSG00000160460|Q9H254-2|SPTBN4 MSMS AL20221201_MKP_PDAC_01 4 455.7207336425781 2 455.718893 909.423233 NaN NaN NaN NaN NaN NaN NaN 43.58 1 38.815 38.315 39.315 -4.7648 0 0 0 0.9249 1 26489 26489 15.768 1.1865 1 + 2363 21546 1624 1653 2671 2671 -0.03510165919283281 APLFFPRLQQQ 11 Unmodified _APLFFPRLQQQ_ 0 0 0 ENST00000404334.1_1_22:25595840-25599741:+|nuORF ENST00000404334.1_1_22:25595840-25599741:+|nuORF ENST00000404334.1_1_22:25595840-25599741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.87451171875 2 672.874779 1343.73501 0.53436 0.00035955 0.42306 0.00028466 0.95741 0.00064422 672.8748042376143 74.348 0.28752 74.392 74.258 74.545 0.043983 26 12 3 0 0 0 0.54936 1 40997 40997 13.906 3.1065 1 1657000 2364 12914 1625 1654 2672 2672 0.07688743105472895 APLFTTPGHL 10 Unmodified _APLFTTPGHL_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.7862548828125 2 527.290017 1052.56548 0.53353 0.00028133 2.6293 0.0013864 3.1628 0.0016677 527.7940362592752 100.64 0.16723 94.466 94.374 94.541 -6.1757 31 11 3 0 0 0 0.22507 1 67314 67314 11.64 1.5664 1 420370000 2365 2782 1626 1655 2673 2673 0.04130046822888289 APLGLRPNAP 10 Unmodified _APLGLRPNAP_ 0 0 0 REV__ENSG00000253304|ENST00000521452|TMEM200B REV__ENSG00000253304|ENST00000521452|TMEM200B MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2971496582031 2 503.295633 1004.57671 1.2919 0.0006502 -0.52958 -0.00026654 0.7623 0.00038366 503.79549947205584 90.847 0.53852 84.672 84.474 85.012 -6.1757 72 31 4 0 0 0 0.57332 1 60081 60081 12.532 0 1 32470000 + 2366 24509 1627 1656 2674 2674 0.07460868917030439 APLGPARWCGV 11 Unmodified _APLGPARWCGV_ 0 0 0 REV__ENST00000417736.2_1_18:12308348-12308651:+|nuORF REV__ENST00000417736.2_1_18:12308348-12308651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.5797729492188 2 563.794943 1125.57533 -0.39046 -0.00022014 1.9926 0.0011234 1.6021 0.00090328 563.7961805731518 27.171 0.15981 27.171 27.055 27.215 0 12 7 2 0 0 0 0.63851 1 13984 13984 9.3831 1.473 1 2197200 + 2367 26790 1628 1657 2675 2675 0.017569115566175242 APLIAPPEPPI 11 Unmodified _APLIAPPEPPI_ 0 0 0 REV__ENSG00000142675|ENST00000361530|CNKSR1 REV__ENSG00000142675|ENST00000361530|CNKSR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3003540039062 2 557.828975 1113.6434 1.8311 0.0010214 2.0548 0.0011462 3.8859 0.0021676 558.3317456180396 92.502 0.39256 92.532 92.362 92.755 0.030197 17 14 2 0 0 0 0.30139 1 51500 51500 2.9952 0.93549 1 6367300 + 2368 20587 1629 1658 2676 2676 0.09112059688277441 APLIQRESVK 10 Unmodified _APLIQRESVK_ 0 0 0 ENST00000475908.5_1_5:56205193-56212726:+|nuORF ENST00000475908.5_1_5:56205193-56212726:+|nuORF ENST00000475908.5_1_5:56205193-56212726:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.896484375 3 380.896029 1139.66626 0.97247 0.00037041 0.24316 9.2619E-05 1.2156 0.00046303 380.89604871028433 45.01 0.4521 40.158 39.905 40.357 -4.852 68 29 3 0 0 0 0.42967 1 27439 27439 19.987 1.2657 1 34941000 2369 13970 1630 1659 2677 2677 0.10201078805744146 APLKLPRVSY 10 Unmodified _APLKLPRVSY_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2356262207031 3 381.901003 1142.68118 0.36133 0.00013799 0.60242 0.00023007 0.96375 0.00036806 381.9012119382012 48.281 0.53601 48.242 47.924 48.46 -0.038643 50 26 2 0 0 0 0.34306 1 25953 25953 24.957 14.058 1 3210500 2370 5932 1631 1660 2678 2678 0.11554570673752096 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(86)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7921142578125 2 546.791535 1091.56852 0.66756 0.00036501 -0.42086 -0.00023012 0.2467 0.00013489 546.7912373964514 49.593 0.40245 49.593 49.352 49.754 0 48 15 5 0 0 0 0.0089732 1 27260 27260 86.332 46.382 1 63833000 2371 4471 1632 1661 2679 2679 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(44)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7918090820312 2 546.791535 1091.56852 0.62252 0.00034039 -0.10248 -5.6035E-05 0.52004 0.00028435 546.7914331442125 49.818 0.29107 49.818 49.695 49.986 0 44 13 4 0 0 0 0.05483 1 27484 27484 43.772 23.319 1 42189000 2372 4471 1632 1661 2680 2680 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(110)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7916259765625 2 546.791535 1091.56852 0.68715 0.00037573 -0.29006 -0.0001586 0.39709 0.00021713 546.7914057923542 49.98 0.43407 49.588 49.277 49.711 -0.3923 71 21 5 0 0 0 0.0087807 2 26848 26848;26954 106.94 63.082 1 138100000 2373 4471 1632 1661 2681;2682 2681 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(140)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.791748046875 2 546.791535 1091.56852 0.7133 0.00039003 -0.36188 -0.00019787 0.35142 0.00019215 546.7913655015054 50.231 0.36118 49.839 49.692 50.053 -0.3923 67 17 5 0 0 0 0.00065891 1 27059 27059 142.08 89.811 1 177800000 2374 4471 1632 1661 2683 2683 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(56)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7919921875 2 546.791535 1091.56852 0.87453 0.00047818 0.62129 0.00033971 1.4958 0.0008179 546.7910604992402 49.628 0.53288 49.579 49.21 49.743 -0.048824 84 26 4 0 0 0 0.028475 1 26891 26891 56.177 22.732 1 16489000 2375 4471 1632 1661 2684 2684 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(73)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.792236328125 2 546.791535 1091.56852 1.2065 0.00065969 1.158 0.00063318 2.3645 0.0012929 546.7913873984396 49.926 0.4016 49.877 49.665 50.066 -0.048824 69 19 5 0 0 0 0.012668 1 26994 26994 72.968 36.841 1 20765000 2376 4471 1632 1661 2685 2685 815 0.026395538853876133 APLKLQMEF 9 Oxidation (M) _APLKLQM(Oxidation (M))EF_ APLKLQM(1)EF APLKLQM(110)EF 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7919921875 2 546.791535 1091.56852 0.91047 0.00049784 0.24688 0.00013499 1.1574 0.00063283 546.7916378537174 55.69 0.8351 49.769 49.241 50.076 -5.9211 171 50 4 0 0 0 0.0087807 3 35544 35292;35422;35544 106.94 59.346 1 412270000 2377 4471 1632 1661 2686;2687;2688 2688 815 0.026395538853876133 APLKLQMEF 9 Unmodified _APLKLQMEF_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7944946289062 2 538.794078 1075.5736 0.44101 0.00023761 0.93638 0.00050451 1.3774 0.00074213 538.7948854439385 66.559 0.14565 66.559 66.47 66.616 0 10 6 2 0 0 0 0.25681 1 37109 37109 19.257 8.4331 1 765130 2378 4471 1632 1662 2689 2689 0.03883857747996444 APLKLQMEF 9 Unmodified _APLKLQMEF_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7938232421875 2 538.794078 1075.5736 0.19775 0.00010655 0.19927 0.00010737 0.39702 0.00021391 538.7943193647264 66.997 0.42065 66.514 66.294 66.715 -0.48323 68 19 5 0 0 0 0.0082475 2 36657 36561;36657 92.653 60.348 1 35137000 2379 4471 1632 1662 2690;2691 2691 0.03883857747996444 APLKLQMEF 9 Unmodified _APLKLQMEF_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.794921875 2 538.794078 1075.5736 0.97723 0.00052653 0.97791 0.00052689 1.9551 0.0010534 538.7946307540743 66.486 0.38351 66.495 66.301 66.684 0.0095596 33 17 2 0 0 0 0.07087 1 36487 36487 39.95 18.413 1 47644000 2380 4471 1632 1662 2692 2692 0.03883857747996444 APLKLQMEF 9 Unmodified _APLKLQMEF_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7945556640625 2 538.794078 1075.5736 0.83747 0.00045123 -0.060892 -3.2808E-05 0.77658 0.00041842 538.7942714570626 74.343 2.5219 68.167 66.522 69.044 -6.1757 286 129 3 0 0 0 0.0059585 1 47886 47886 114.65 66.9 1 138740000 2381 4471 1632 1662 2693 2693 0.03883857747996444 APLKPRAPPLP 11 Unmodified _APLKPRAPPLP_ 0 0 0 REV__ENST00000545616.2_1_20:3955030-3996108:-|nuORF REV__ENST00000545616.2_1_20:3955030-3996108:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 578.8631591796875 2 578.863683 1155.71281 NaN NaN NaN NaN NaN NaN NaN 105.85 1 99.676 99.176 100.18 -6.1757 0 0 0 0.94184 1 70893 70893 1.1933 0 1 + 2382 28652 1633 1663 2694 2694 0.14118563427678055 APLKQRSKLY 10 Unmodified _APLKQRSKLY_ 0 0 0 THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|84|3|anti-sense THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|84|3|anti-sense THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|84|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5612182617188 3 401.91179 1202.71354 0.61395 0.00024675 -2.4425 -0.00098166 -1.8285 -0.00073491 401.9110461335735 57.798 0.16042 57.732 57.655 57.815 -0.066036 12 7 2 0 0 0 0.23767 1 31487 31487 6.1918 0.78914 1 841230 2383 30190 1634 1664 2695 2695 0.1202935807675658 APLKSKMIY 9 Oxidation (M) _APLKSKM(Oxidation (M))IY_ APLKSKM(1)IY APLKSKM(53)IY 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.8014526367188 2 533.801903 1065.58925 -0.15754 -8.4095E-05 -0.71621 -0.00038232 -0.87375 -0.00046641 533.8016359494536 21.601 0.34083 21.601 21.443 21.784 0 149 47 4 0 0 0 0.033587 1 10970 10970 53.404 29.383 1 10660000 2384 8252;7335;3901 1635 1665 2696 2696 696 0.05908144265072224 APLKSKMIY 9 Oxidation (M) _APLKSKM(Oxidation (M))IY_ APLKSKM(1)IY APLKSKM(68)IY 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8017578125 2 533.801903 1065.58925 -0.29314 -0.00015648 -0.066119 -3.5294E-05 -0.35926 -0.00019177 533.8019517857022 21.495 0.38517 21.523 21.305 21.691 0.028355 68 21 4 0 0 0 0.015688 2 10843 10843;10940 67.838 41.875 1 17190000 2385 8252;7335;3901 1635 1665 2697;2698 2697 696 0.05908144265072224 APLKSKMIY 9 Oxidation (M) _APLKSKM(Oxidation (M))IY_ APLKSKM(1)IY APLKSKM(68)IY 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8014526367188 2 533.801903 1065.58925 0.14905 7.9561E-05 -1.3651 -0.00072872 -1.2161 -0.00064916 533.8012960067371 21.436 0.2854 21.45 21.335 21.621 0.013796 145 47 4 0 0 0 0.015688 2 11026 10922;11026 67.838 37.998 1 29377000 2386 8252;7335;3901 1635 1665 2699;2700 2700 696 0.05908144265072224 APLKSKMIY 9 Oxidation (M) _APLKSKM(Oxidation (M))IY_ APLKSKM(1)IY APLKSKM(90)IY 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8026123046875 2 533.801903 1065.58925 0.20058 0.00010707 -0.52762 -0.00028165 -0.32704 -0.00017457 533.8017832601805 24.275 0.5645 21.447 21.196 21.761 -2.8273 106 31 4 0 0 0 0.0085366 3 13091 13091;13200;13316 100.09 48.461 1 169320000 2387 8252;7335;3901 1635 1665 2701;2702;2703 2701 696 0.05908144265072224 APLKSKMIY 9 Unmodified _APLKSKMIY_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8721313476562 3 350.872056 1049.59434 1.2043 0.00042257 -0.20989 -7.3644E-05 0.99445 0.00034892 350.8720566143309 32.971 0.5206 29.115 28.872 29.393 -3.8562 117 32 5 0 0 0 0.10247 3 18750 18750;18880;19005 30.703 14.351 1 646060000 2388 8252;7335;3901 1635 1666 2704;2705;2706 2704 0.07152448127681055 APLKSKMIY 9 Unmodified _APLKSKMIY_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 350.872056 1049.59434 -0.08759 -3.0733E-05 1.3868 0.00048659 1.2992 0.00045586 350.87224620670656 29.448 0.091696 29.478 29.415 29.507 0.030106 0.18152 0.0015472 NaN 30.703 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2797600 2389 8252;7335;3901 1635 1666 0.07152448127681055 APLLCCLG 8 Unmodified _APLLCCLG_ 0 0 0 REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.20361328125 2 395.20351 788.392467 NaN NaN NaN NaN NaN NaN NaN 5.9254 1 3.4435 2.9435 3.9435 -2.482 0 0 0 0.97444 1 3003 3003 0.79363 0 1 + 2390 26721 1636 1667 2707 2707 -0.010193588295237532 APLLELTAY 9 Unmodified _APLLELTAY_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7786254882812 2 495.778951 989.543348 1.0733 0.00053214 -0.84264 -0.00041776 0.23071 0.00011438 495.77815245736457 79.758 0.33276 79.269 79.096 79.428 -0.48932 26 14 3 0 0 0 0.48152 1 43655 43655 8.5933 2.8329 1 1204100 2391 9308 1637 1668 2708 2708 0.04815822354464672 APLLELTAY 9 Unmodified _APLLELTAY_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.5560302734375 1 990.550625 989.543348 1.0057 0.00099617 2.0019 0.001983 3.0076 0.0029792 990.5526906604382 87.144 0.28723 80.968 80.788 81.075 -6.1757 23 15 2 0 0 0 0.019979 2 57386 57386;57514 63.563 19.156 1 8991200 2392 9308 1637 1668 2709;2710 2709 0.04815822354464672 APLLKRLSL 9 Unmodified _APLLKRLSL_ 0 0 0 nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1 nc|ENSG00000059573|P54886-2|ALDH18A1 nc|ENSG00000059573|P54886-2|ALDH18A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2797546386719 2 505.839677 1009.6648 1.4181 0.00071734 -0.25164 -0.00012729 1.1665 0.00059005 505.8398171674514 50.358 0.24569 50.309 50.148 50.393 -0.048828 19 11 2 0 0 0 0.19994 1 27217 27217 12.241 5.5175 1 2290500 2393 815 1638 1669 2711 2711 0.16035489507646616 APLLLTLDDV 10 Unmodified _APLLLTLDDV_ 0 0 0 ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.9100952148438 3 357.209502 1068.60668 1.1891 0.00042477 -2.3067 -0.00082397 -1.1175 -0.00039919 357.20883367403746 22.541 0.23402 19.763 19.594 19.828 -2.7784 23 12 2 0 0 0 0.23103 1 12152 12152 13.615 4.2317 1 4194900 2394 4482 1639 1670 2712 2712 0.07511763071715905 APLLRHLGL 9 Unmodified _APLLRHLGL_ 0 0 0 ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B ENSG00000183615|ENST00000373582|FAM167B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.3165893554688 2 495.316369 988.618185 1.6145 0.00079969 -0.56654 -0.00028062 1.048 0.00051907 495.3160746010764 50.182 0.2642 50.133 50.006 50.271 -0.048828 26 12 3 0 0 0 0.031062 1 27113 27113 54.774 27.89 1 2446100 2395 9167 1640 1671 2713 2713 0.12342049676362876 APLMWELIH 9 Unmodified _APLMWELIH_ 0 0 0 ENSG00000169519|ENST00000407364|METTL15;ENST00000481421.1_1_3:156431675-156432128:-|nuORF ENSG00000169519|ENST00000407364|METTL15 ENSG00000169519|ENST00000407364|METTL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2921142578125 2 555.294245 1108.57394 NaN NaN NaN NaN NaN NaN NaN 76.567 1 76.617 76.117 77.117 0.049416 0 0 0 0.46757 1 42249 42249 16.942 2.104 1 2396 7881 1641 1672 2714 2714 0.023992774678845308 APLNHWKNV 9 Unmodified _APLNHWKNV_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2224426269531 3 360.197931 1077.57196 -0.083876 -3.0212E-05 0.97395 0.00035081 0.89007 0.0003206 360.1982903617237 37.935 0.35739 37.952 37.773 38.13 0.01704 41 16 3 0 0 0 0.21874 1 20090 20090 0.26902 0 1 12092000 + 2397 24028 1642 1673 2715 2715 0.03627984774266224 APLPAPSRGLP 11 Unmodified _APLPAPSRGLP_ 0 0 0 ENST00000473880.5_1_7:102112857-102113139:+|nuORF ENST00000473880.5_1_7:102112857-102113139:+|nuORF ENST00000473880.5_1_7:102112857-102113139:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2137145996094 3 359.213469 1074.61858 -0.33023 -0.00011862 -0.16087 -5.7788E-05 -0.49111 -0.00017641 359.2133397723669 31.799 0.23876 31.83 31.627 31.866 0.030106 17 10 2 0 0 0 0.61059 1 16673 16673 8.7518 0 1 1945500 2398 13927 1643 1674 2716 2716 0.0842542460554796 APLPAQAVF 9 Unmodified _APLPAQAVF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2609252929688 2 457.260728 912.506903 0.44404 0.00020304 -1.1691 -0.0005346 -0.72509 -0.00033156 457.2604292326331 65.54 0.32476 65.54 65.347 65.671 0 24 12 3 0 0 0 0.28047 1 36578 36578 18.135 8.7875 1 662620 2399 2128 1644 1675 2717 2717 0.04714990248419326 APLPAQAVF 9 Unmodified _APLPAQAVF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2608032226562 2 457.260728 912.506903 -0.043088 -1.9702E-05 0.083158 3.8025E-05 0.04007 1.8322E-05 457.26082721462336 66.038 0.38319 65.554 65.361 65.744 -0.48323 34 18 3 0 0 0 0.027803 2 36010 36010;36112 56.541 35.087 1 6307500 2400 2128 1644 1675 2718;2719 2718 0.04714990248419326 APLPAQAVF 9 Unmodified _APLPAQAVF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2623291015625 2 457.260728 912.506903 1.1491 0.00052542 0.10002 4.5734E-05 1.2491 0.00057116 457.2608067829719 71.802 0.42872 65.626 65.367 65.796 -6.1757 39 23 2 0 0 0 0.013472 1 46898 46898 70.716 40.491 1 38105000 2401 2128 1644 1675 2720 2720 0.04714990248419326 APLPELIFT 9 Unmodified _APLPELIFT_ 0 0 0 ENST00000394464.6_1_5:142780375-142783084:-|nuORF ENST00000394464.6_1_5:142780375-142783084:-|nuORF ENST00000394464.6_1_5:142780375-142783084:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7899780273438 2 500.789318 999.564084 NaN NaN NaN NaN NaN NaN NaN 103.59 1 103.48 102.98 103.98 -0.10458 0 0 0 0.83049 1 56501 56501 3.9444 0 1 2402 12739 1645 1676 2721 2721 0.06428412734146605 APLPLPSEF 9 Unmodified _APLPLPSEF_ 0 0 0 nc|ENSG00000115806|Q9H8Y8-2|GORASP2;GORASP2|p.E382Sfs*33|1|0.04|ENSG00000115806|chr2:170965914-170965914|A/-|frameshift_variant;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF nc|ENSG00000115806|Q9H8Y8-2|GORASP2 nc|ENSG00000115806|Q9H8Y8-2|GORASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7662048339844 2 485.765843 969.517133 0.81112 0.00039401 1.218 0.00059167 2.0291 0.00098568 485.7660617011115 81.95 0.24124 81.454 81.287 81.528 -0.4952 19 8 3 0 0 0 0.53666 1 44884 44884 5.2307 0 1 333220 2403 3162 1646 1677 2722 2722 0.031155531829995198 APLPNPLAEF 10 Unmodified _APLPNPLAEF_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.790283203125 2 534.78985 1067.56515 0.38127 0.0002039 0.76282 0.00040795 1.1441 0.00061185 534.7903539572778 91.137 0.42517 90.642 90.44 90.865 -0.49458 42 19 3 0 0 0 0.27276 2 49877 49780;49877 29.082 10.947 1 1810700 2404 1470 1647 1678 2723;2724 2724 0.03406627103026949 APLPNPLAEF 10 Unmodified _APLPNPLAEF_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.789794921875 2 534.78985 1067.56515 0.99421 0.00053169 -0.98195 -0.00052514 0.012257 6.5548E-06 534.7893725471076 99.435 0.1158 93.26 93.174 93.29 -6.1757 10 7 2 0 0 0 0.11755 1 66204 66204 43.858 7.3521 1 15786000 2405 1470 1647 1678 2725 2725 0.03406627103026949 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7474670410156 2 448.747453 895.480354 0.6546 0.00029375 -0.30824 -0.00013832 0.34636 0.00015543 448.7473718955158 49.402 1.1355 49.402 48.874 50.009 0 124 53 3 0 0 0 0.0081202 5 27386 27012;27130;27248;27386;27516 93.763 48.013 1 3699900 2406 10878 1648 1679 2726;2727;2728;2729;2730 2729 0.02843301357074779 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.479248046875 1 896.48763 895.480354 0.12079 0.00010829 -3.5485 -0.0031812 -3.4277 -0.0030729 896.484180682179 49.777 0.37174 49.385 49.119 49.49 -0.3923 27 18 2 0 0 0 0.028712 2 26755 26686;26755 56.048 19.582 1 1981200 2407 10878 1648 1679 2731;2732 2732 0.02843301357074779 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.748291015625 2 448.747453 895.480354 0.73355 0.00032918 0.21122 9.4785E-05 0.94477 0.00042396 448.74750911782365 49.996 1.0287 49.604 48.943 49.971 -0.3923 75 51 2 0 0 0 0.01018 3 26950 26741;26950;27080 79.935 34.185 1 2154800 2408 10878 1648 1679 2733;2734;2735 2734 0.02843301357074779 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.4879150390625 1 896.48763 895.480354 0.15687 0.00014064 0.72876 0.00065333 0.88564 0.00079396 896.4878205084298 49.994 0.44107 49.602 49.49 49.931 -0.3923 30 21 2 0 0 0 0.047696 2 26859 26859;26965 45.75 9.7058 1 1762700 2409 10878 1648 1679 2736;2737 2736 0.02843301357074779 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.490478515625 1 896.48763 895.480354 0.15438 0.0001384 -0.72749 -0.00065219 -0.57311 -0.00051379 896.4876525113193 56.797 0.2921 50.82 50.649 50.941 -5.9769 24 16 2 0 0 0 0.0030119 1 36249 36249 126.6 70.552 1 15179000 2410 10878 1648 1679 2738 2738 0.02843301357074779 APLPPAPAY 9 Unmodified _APLPPAPAY_ 0 0 0 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG;nc|ENSG00000269335|Q9Y6K9-3|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7483215332031 2 448.747453 895.480354 0.88264 0.00039608 -0.14366 -6.4465E-05 0.73898 0.00033162 448.7473267994463 57.077 1.1916 51.1 50.428 51.62 -5.9769 105 68 2 0 0 0 0.0079702 4 36420 36290;36420;36556;36739 109.15 63.404 1 36324000 2411 10878 1648 1679 2739;2740;2741;2742 2740 0.02843301357074779 APLPPYAAPYL 11 Unmodified _APLPPYAAPYL_ 0 0 0 REV__ENSG00000163623|ENST00000295886|NKX6-1 REV__ENSG00000163623|ENST00000295886|NKX6-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8777770996094 3 391.549859 1171.62775 1.2171 0.00047656 -2.0579 -0.00080577 -0.84078 -0.00032921 391.5498908371181 40.701 0.56623 36.172 35.824 36.39 -4.5294 70 34 3 0 0 0 0.61011 1 24174 24174 5.4027 0.35519 1 44790000 + 2412 21790 1649 1680 2743 2743 0.048797731712284076 APLPQLRL 8 Unmodified _APLPQLRL_ 0 0 0 ENST00000480424.6_1_16:630665-633032:+|nuORF ENST00000480424.6_1_16:630665-633032:+|nuORF ENST00000480424.6_1_16:630665-633032:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2901306152344 2 454.28982 906.565087 1.5839 0.00071956 -0.86925 -0.00039489 0.71468 0.00032467 454.2893485008522 49.932 0.40401 49.883 49.723 50.127 -0.048828 33 19 2 0 0 0 0.61462 1 27007 27007 24.674 0 1 1440500 2413 14056 1650 1681 2744 2744 0.10806671893703879 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.4872436523438 1 994.488024 993.480748 -0.077424 -7.6997E-05 0.030436 3.0268E-05 -0.046988 -4.6729E-05 994.4877844324762 65.538 0.42275 65.538 65.37 65.793 0 31 17 2 0 0 0 0.0031966 2 36622 36515;36622 125.62 68.153 1 2938700 2414 7922 1651 1682 2745;2746 2746 -0.016253237137220822 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7482604980469 2 497.74765 993.480748 0.22515 0.00011207 0.59547 0.00029639 0.82062 0.00040846 497.74789677658515 65.66 0.44661 65.66 65.347 65.793 0 35 18 2 0 0 0 0.012158 2 36623 36524;36623 74.396 23.541 1 9150300 2415 7922 1651 1682 2747;2748 2748 -0.016253237137220822 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.4827880859375 1 994.488024 993.480748 -0.004738 -4.7119E-06 -0.64325 -0.00063971 -0.64799 -0.00064442 994.4872046564485 66.144 0.35942 65.66 65.521 65.88 -0.48323 29 19 2 0 0 0 0.0067112 2 36183 36063;36183 112.59 58.774 1 8384400 2416 7922 1651 1682 2749;2750 2750 -0.016253237137220822 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7477416992188 2 497.74765 993.480748 0.054355 2.7055E-05 0.063514 3.1614E-05 0.11787 5.8669E-05 497.7475586138938 66.19 0.42398 65.706 65.456 65.88 -0.48323 42 22 2 0 0 0 0.019979 1 36139 36139 63.563 25.412 1 11947000 2417 7922 1651 1682 2751 2751 -0.016253237137220822 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.4896850585938 1 994.488024 993.480748 0.84309 0.00083844 -0.17304 -0.00017209 0.67005 0.00066635 994.4880272510346 72.301 0.47099 66.125 65.86 66.331 -6.1757 42 23 2 0 0 0 3.0472E-10 3 47325 47211;47325;47433 170.55 103.21 1 17263000 2418 7922 1651 1682 2752;2753;2754 2753 -0.016253237137220822 APLPSFEAY 9 Unmodified _APLPSFEAY_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7463073730469 2 497.74765 993.480748 1.0494 0.00052234 -0.91266 -0.00045427 0.13676 6.8072E-05 497.74671939059795 72.294 0.58249 66.119 65.83 66.412 -6.1757 68 29 3 0 0 0 0.03327 1 47280 47280 53.576 34.137 1 45672000 2419 7922 1651 1682 2755 2755 -0.016253237137220822 APLQEKVVF 9 Unmodified _APLQEKVVF_ 0 0 0 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.8003540039062 2 515.800217 1029.58588 0.36409 0.0001878 0.4181 0.00021566 0.7822 0.00040346 515.8003500258393 50.563 0.39356 50.563 50.35 50.744 0 54 18 4 0 0 0 0.0099157 2 27825 27825;27934 80.676 11.571 1 98752000 2420 353;6647 1652 1683 2756;2757 2756 0.07227217482704873 APLQEKVVF 9 Unmodified _APLQEKVVF_ 0 0 0 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8004150390625 2 515.800217 1029.58588 0.23177 0.00011955 0.61033 0.00031481 0.84211 0.00043436 515.8004896557687 51.001 0.5183 50.588 50.394 50.912 -0.41351 84 25 5 0 0 0 0.0099157 2 27426 27426;27527 80.676 11.571 1 57172000 2421 353;6647 1652 1683 2758;2759 2758 0.07227217482704873 APLQEKVVF 9 Unmodified _APLQEKVVF_ 0 0 0 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8004150390625 2 515.800217 1029.58588 0.66021 0.00034054 0.49379 0.0002547 1.154 0.00059523 515.8005740245555 50.827 0.81882 50.773 50.388 51.207 -0.053871 89 40 3 0 0 0 0.01958 1 27354 27354 63.961 1.3878 1 6763300 2422 353;6647 1652 1683 2760 2760 0.07227217482704873 APLQEKVVF 9 Unmodified _APLQEKVVF_ 0 0 0 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8005981445312 2 515.800217 1029.58588 0.58517 0.00030183 0.060926 3.1426E-05 0.6461 0.00033326 515.8001785563165 56.342 0.54915 50.366 50.118 50.668 -5.9769 105 31 4 0 0 0 0.0085366 3 35970 35839;35970;36112 90.135 21.03 1 424010000 2423 353;6647 1652 1683 2761;2762;2763 2762 0.07227217482704873 APLQHRHVL 9 Unmodified _APLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.5453491210938 3 357.545442 1069.6145 -0.58239 -0.00020823 0.44353 0.00015858 -0.13885 -4.9647E-05 357.5456042956516 17.495 0.13044 17.509 17.453 17.583 0.013865 95 27 4 0 0 0 0.023164 1 8689 8689 45.7 34.9 1 11556000 2424 7612 1653 1684 2764 2764 0.08247379902513785 APLQHRHVL 9 Unmodified _APLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5459594726562 3 357.545442 1069.6145 -0.032965 -1.1787E-05 0.42855 0.00015323 0.39559 0.00014144 357.5455992828819 17.325 0.17801 17.33 17.269 17.447 0.0050564 26 12 3 0 0 0 0.038285 1 8735 8735 38.176 27.376 1 2953800 2425 7612 1653 1684 2765 2765 0.08247379902513785 APLQHRHVL 9 Unmodified _APLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5459899902344 3 357.545442 1069.6145 1.6738 0.00059844 -0.38207 -0.00013661 1.2917 0.00046184 357.5453406483675 19.401 0.4086 16.745 16.546 16.955 -2.6564 122 36 4 0 0 0 0.06187 2 10198 10198;10302 45.7 30.451 1 165140000 2426 7612 1653 1684 2766;2767 2766 0.08247379902513785 APLQHRHVL 9 Unmodified _APLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8141479492188 2 535.814525 1069.6145 0.91035 0.00048778 -1.0443 -0.00055958 -0.13399 -7.1796E-05 535.8139111888767 19.384 0.22527 16.728 16.624 16.85 -2.6564 40 21 2 0 0 0 0.0018186 1 10231 10231 133.7 89.844 1 10957000 2427 7612 1653 1684 2768 2768 0.08247379902513785 APLQHRHVL 9 Unmodified _APLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 357.545442 1069.6145 -0.55894 -0.00019984 1.1978 0.00042825 0.63882 0.00022841 357.54591659318305 17.23 0.13235 17.23 17.174 17.307 0 -0.12623 0.00063047 NaN 45.7 50 28 2 NaN NaN NaN NaN 0 NaN NaN 0 906000 2428 7612 1653 1684 0.08247379902513785 APLQQHSLYPM 11 Unmodified _APLQQHSLYPM_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MSMS AL20221201_MKP_PDAC_01 4 428.88671875 3 428.885024 1283.63324 NaN NaN NaN NaN NaN NaN NaN 34.618 1 30.523 30.023 31.023 -4.0951 0 0 0 0.61053 1 19980 19980 12.228 0 1 + 2429 19430 1654 1685 2769 2769 0.002771286914139637 APLQQRDLL 9 Unmodified _APLQQRDLL_ 0 0 0 REV__ENSG00000105523|ENST00000263266|FAM83E REV__ENSG00000105523|ENST00000263266|FAM83E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.20849609375 3 351.873224 1052.59784 -0.59059 -0.00020781 1.6004 0.00056313 1.0098 0.00035532 351.87369160540953 18.902 0.14685 18.925 18.83 18.977 0.023106 18 10 2 0 0 0 0.48152 1 9491 9491 8.7454 4.8691 1 686410 + 2430 18432 1655 1686 2770 2770 0.07364834225904815 APLRVQVQ 8 Unmodified _APLRVQVQ_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7775573730469 2 455.777077 909.5396 0.085193 3.8829E-05 0.11759 5.3594E-05 0.20278 9.2423E-05 455.77716442459547 23.525 0.18171 23.525 23.407 23.588 0 15 8 3 0 0 0 0.78849 1 11972 11972 9.3474 0 1 780920 2431 9884 1656 1687 2771 2771 0.08121197371281141 APLSLPLFSFP 11 Unmodified _APLSLPLFSFP_ 0 0 0 REV__ENST00000302386.9_1_17:7143934-7144000:-|nuORF REV__ENST00000302386.9_1_17:7143934-7144000:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8936157226562 3 396.893625 1187.65905 0.95835 0.00038036 0.17948 7.1235E-05 1.1378 0.0004516 396.8935294412824 90.115 0.51459 83.939 83.793 84.307 -6.1757 71 29 3 0 0 0 0.58219 1 59771 59771 6.6235 1.9075 1 40788000 + 2432 25332 1657 1688 2772 2772 0.07272346205331814 APLSPKILVKY 11 Unmodified _APLSPKILVKY_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2605285644531 3 410.260308 1227.7591 0.36174 0.00014841 -0.12366 -5.0731E-05 0.23808 9.7675E-05 410.260423152215 50.806 0.15381 50.752 50.669 50.823 -0.053875 12 7 2 0 0 0 0.66568 1 27506 27506 7.4771 4.4048 1 1116800 2433 9187 1658 1689 2773 2773 0.15432583539131883 APLSVEVEF 9 Unmodified _APLSVEVEF_ 0 0 0 nc|ENSG00000167118|Q9BTM9-3|URM1;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1 nc|ENSG00000167118|Q9BTM9-3|URM1 nc|ENSG00000167118|Q9BTM9-3|URM1 MSMS AL20221201_MKP_PDAC_01 4 495.7602233886719 2 495.760758 989.506963 NaN NaN NaN NaN NaN NaN NaN 82.927 1 76.751 76.251 77.251 -6.1757 0 0 0 0.096036 1 54501 54501 44.407 19.733 1 2434 7577 1659 1690 2774 2774 0.011789454577751712 APLTEDQQNRL 11 Unmodified _APLTEDQQNRL_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP;nc|ENSG00000100106|Q9H2D6-6|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.8893432617188 3 428.889603 1283.64698 NaN NaN NaN NaN NaN NaN NaN 31.375 1 31.375 30.875 31.875 0 0 0 0 0.90364 1 16340 16340 3.5927 0 1 2435 1756 1660 1691 2775 2775 0.016500777242072218 APLTEELVF 9 Unmodified _APLTEELVF_ 0 0 0 ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF ENSG00000173653|ENST00000309657|RCE1 ENSG00000173653|ENST00000309657|RCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7772521972656 2 509.776408 1017.53826 0.33465 0.0001706 0.94148 0.00047994 1.2761 0.00065054 509.7765487960507 82.169 0.37517 82.169 81.985 82.36 0 40 17 3 0 0 0 0.30562 1 45560 45560 16.942 4.4107 1 1192800 2436 8351 1661 1692 2776 2776 0.030195184918625273 APLVRCVTL 9 Unmodified _APLVRCVTL_ 0 0 0 REV__ENST00000373366.2_1_1:35247033-35247153:+|nuORF REV__ENST00000373366.2_1_1:35247033-35247153:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2893371582031 2 486.288963 970.563372 0.26518 0.00012895 0.12555 6.1052E-05 0.39072 0.00019001 486.2890664111031 55.32 0.33873 55.251 55.057 55.395 -0.068741 38 16 3 0 0 0 0.095405 1 30012 30012 34.102 7.2188 1 7212000 + 2437 26144 1662 1693 2777 2777 0.07691294813446348 APLWELPL 8 Unmodified _APLWELPL_ 0 0 0 ENST00000431232.6_1_16:421130-421340:-|nuORF ENST00000431232.6_1_16:421130-421340:-|nuORF ENST00000431232.6_1_16:421130-421340:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7706298828125 2 469.770929 937.527304 0.49191 0.00023109 -1.791 -0.00084137 -1.2991 -0.00061029 469.7697280841636 86.771 0.30851 86.268 86.089 86.398 -0.50318 22 11 3 0 0 0 0.72953 1 47452 47452 14.582 0 1 597340 2438 13257 1663 1694 2778 2778 0.056041609082285504 APLWLLRLSP 10 Unmodified _APLWLLRLSP_ 0 0 0 ENST00000409419.5_1_19:40884091-40884373:+|nuORF ENST00000409419.5_1_19:40884091-40884373:+|nuORF ENST00000409419.5_1_19:40884091-40884373:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2419128417969 3 389.241248 1164.70191 0.211 8.2132E-05 0.82998 0.00032306 1.041 0.00040519 389.2414460162524 39.556 0.39122 39.567 39.344 39.736 0.011452 42 18 3 0 0 0 0.72044 1 21095 21095 0.62683 0 1 5530600 2439 12961 1664 1695 2779 2779 0.12615161053417978 APLYEEITY 9 Unmodified _APLYEEITY_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7740478515625 2 549.771322 1097.52809 0.32925 0.00018101 1.1505 0.00063252 1.4798 0.00081353 549.7718532987811 64.265 0.56661 64.265 63.93 64.496 0 113 24 7 0 0 0 0.03327 3 35769 35737;35769;35867 53.576 31.829 1 38006000 2440 2069 1665 1696 2780;2781;2782 2781 -0.016770892333852316 APLYEEITY 9 Unmodified _APLYEEITY_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7722778320312 2 549.771322 1097.52809 0.4368 0.00024014 2.5876 0.0014226 3.0244 0.0016627 549.7727227713636 64.871 0.25763 64.386 64.253 64.51 -0.48512 19 11 2 0 0 0 0.078417 1 35380 35380 38.151 21.209 1 1245300 2441 2069 1665 1696 2783 2783 -0.016770892333852316 APLYEEITY 9 Unmodified _APLYEEITY_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7720336914062 2 549.771322 1097.52809 1.1097 0.0006101 -2.3546 -0.0012945 -1.2448 -0.00068438 549.7695294813781 71.527 0.38454 65.351 65.189 65.573 -6.1757 67 19 5 0 0 0 0.052168 3 46701 46690;46701;46824 44.407 21.259 1 88197000 2442 2069 1665 1696 2784;2785;2786 2785 -0.016770892333852316 APLYIFLRR 9 Unmodified _APLYIFLRR_ 0 0 0 ENST00000468307.1_1_7:155094489-155094564:+|nuORF;ENST00000344756.8_1_7:155094489-155095551:+|nuORF ENST00000468307.1_1_7:155094489-155094564:+|nuORF ENST00000468307.1_1_7:155094489-155094564:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5694885253906 3 383.569476 1147.6866 1.8072 0.00069318 -0.75303 -0.00028884 1.0542 0.00040434 383.9034559853406 95.666 0.21805 89.49 89.383 89.601 -6.1757 30 13 3 0 0 0 0.087258 1 63343 63343 26.268 1.2772 1 22287000 2443 12021 1666 1697 2787 2787 0.1186629425621959 APLYQLFVR 9 Unmodified _APLYQLFVR_ 0 0 0 REV__nc|ENSG00000120063|Q14344-2|GNA13 REV__nc|ENSG00000120063|Q14344-2|GNA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.5502014160156 3 369.550082 1105.62842 0.28998 0.00010716 -0.18979 -7.0138E-05 0.10019 3.7023E-05 369.54997172920514 54.044 0.33966 53.577 53.407 53.746 -0.46664 55 16 4 0 0 0 0.41742 1 29220 29220 7.609 0 1 79409000 + 2444 19225 1667 1698 2788 2788 0.07982612610931028 APLYQLFVR 9 Unmodified _APLYQLFVR_ 0 0 0 REV__nc|ENSG00000120063|Q14344-2|GNA13 REV__nc|ENSG00000120063|Q14344-2|GNA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5506896972656 3 369.550082 1105.62842 1.6644 0.00061508 -0.33043 -0.00012211 1.334 0.00049297 369.54986115282657 59.31 0.54113 53.235 52.973 53.514 -6.0745 77 29 4 0 0 0 0.49272 1 38059 38059 4.897 0 1 130880000 + 2445 19225 1667 1698 2789 2789 0.07982612610931028 APLYQLFVR 9 Unmodified _APLYQLFVR_ 0 0 0 REV__nc|ENSG00000120063|Q14344-2|GNA13 REV__nc|ENSG00000120063|Q14344-2|GNA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5503234863281 3 369.550082 1105.62842 1.5551 0.00057468 -0.19114 -7.0636E-05 1.3639 0.00050404 369.54996771755793 80.293 1.388 74.118 73.073 74.462 -6.1757 282 81 4 0 0 0 0.32871 4 52568 52309;52568;52696;52819 10.8 0 1 438630000 + 2446 19225 1667 1698 2790;2791;2792;2793 2791 0.07982612610931028 APMDQHQRQR 10 Unmodified _APMDQHQRQR_ 0 0 0 REV__ENSG00000071537|ENST00000336735|SEL1L REV__ENSG00000071537|ENST00000336735|SEL1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.876953125 3 422.875522 1265.60474 NaN NaN NaN NaN NaN NaN NaN 18.353 1 18.359 17.859 18.859 0.0060463 0 0 0 1.0019 1 9298 9298 0.15932 0 1 + 2447 17494 1668 1699 2794 2794 -0.017441761651980414 APMIKKIAF 9 Oxidation (M) _APM(Oxidation (M))IKKIAF_ APM(1)IKKIAF APM(78)IKKIAF 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8070678710938 2 517.806988 1033.59942 0.39039 0.00020214 0.4557 0.00023596 0.84608 0.00043811 517.8073277670873 39.735 0.39283 39.74 39.543 39.936 0.0050545 61 18 4 0 0 0 0.010818 1 21110 21110 78.149 57.696 1 11104000 2448 1295 1669 1700 2795 2795 218 0.08396751990289886 APMIKKIAF 9 Oxidation (M) _APM(Oxidation (M))IKKIAF_ APM(1)IKKIAF APM(61)IKKIAF 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8079223632812 2 517.806988 1033.59942 0.62296 0.00032258 -0.066622 -3.4497E-05 0.55634 0.00028808 517.807155888942 43.925 0.46202 39.16 38.857 39.319 -4.7648 61 29 3 0 0 0 0.022193 1 26628 26628 61.357 44.271 1 16380000 2449 1295 1669 1700 2796 2796 218 0.08396751990289886 APMIKKIAF 9 Unmodified _APMIKKIAF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8100280761719 2 509.809531 1017.60451 0.67112 0.00034214 -0.40216 -0.00020502 0.26896 0.00013712 509.8093748242476 49.945 0.37626 44.406 44.218 44.594 -5.5391 58 23 3 0 0 0 0.010818 1 31253 31253 78.149 62.381 1 29135000 2450 1295 1669 1701 2797 2797 0.09641055852910085 APMILCPLY 9 Unmodified _APMILCPLY_ 0 0 0 REV__ENST00000493746.1_1_2:27657358-27658741:+|nuORF REV__ENST00000493746.1_1_2:27657358-27658741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7668151855469 2 510.766474 1019.5184 0.26129 0.00013346 -1.0409 -0.00053168 -0.77966 -0.00039823 510.76629370511364 65.63 0.22061 65.63 65.475 65.695 0 13 8 2 0 0 0 0.46577 1 36605 36605 9.3474 0.75416 1 414200 + 2451 27926 1670 1702 2798 2798 0.009417279558761038 APMILCPLY 9 Unmodified _APMILCPLY_ 0 0 0 REV__ENST00000493746.1_1_2:27657358-27658741:+|nuORF REV__ENST00000493746.1_1_2:27657358-27658741:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.766474 1019.5184 0.26129 0.00013346 -1.0409 -0.00053168 -0.77966 -0.00039823 510.76629370511364 65.63 0.22061 65.63 65.475 65.695 0 0 0 NaN 9.3474 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 414200 + 2452 27926 1670 1702 0.009417279558761038 APMPPDHFY 9 Oxidation (M) _APM(Oxidation (M))PPDHFY_ APM(1)PPDHFY APM(60)PPDHFY 0 0 1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.736328125 2 545.73676 1089.45897 0.26752 0.000146 -1.0077 -0.00054995 -0.74019 -0.00040395 545.7367645900488 39.602 0.70797 39.602 39.244 39.952 0 76 34 3 0 0 0 0.023164 1 21373 21373 60.39 43.277 1 5277300 2453 7990 1671 1703 2799 2799 1358 -0.08218451733932852 APMPPDHFY 9 Oxidation (M) _APM(Oxidation (M))PPDHFY_ APM(1)PPDHFY APM(51)PPDHFY 0 0 1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7371215820312 2 545.73676 1089.45897 0.060367 3.2944E-05 -0.28134 -0.00015354 -0.22097 -0.00012059 545.7366941647789 40.061 0.45994 39.764 39.548 40.008 -0.29716 37 21 2 0 0 0 0.038285 1 21119 21119 50.855 38.614 1 1916800 2454 7990 1671 1703 2800 2800 1358 -0.08218451733932852 APMPPDHFY 9 Oxidation (M) _APM(Oxidation (M))PPDHFY_ 0 0 1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 545.73676 1089.45897 0.4667 0.0002547 0.39284 0.00021438 0.85954 0.00046908 545.7373734429207 44.904 0.55112 40.052 39.715 40.267 -4.852 0.24615 0.00087634 NaN 60.39 64 41 2 NaN NaN NaN NaN 0 NaN NaN 0 9463300 2455 7990 1671 1703 1358 -0.08218451733932852 APMRSSQVSAL 11 Unmodified _APMRSSQVSAL_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;ENSG00000213214|ENST00000378115|ARHGEF35 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8006591796875 2 573.800423 1145.58629 0.75329 0.00043224 -1.9527 -0.0011205 -1.1994 -0.00068824 574.2989592076576 35.452 0.60881 31.259 31.04 31.648 -4.1928 50 37 2 0 0 0 0.0025724 1 20503 20503 79.427 28.012 1 13388000 2456 720 1672 1704 2801 2801 0.019322691402749115 APMSAAHQL 9 Oxidation (M) _APM(Oxidation (M))SAAHQL_ APM(1)SAAHQL APM(66)SAAHQL 0 0 1 ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2295227050781 2 471.229102 940.443651 1.0538 0.00049659 1.2959 0.00061066 2.3497 0.0011072 471.22932075895346 20.065 0.33953 17.409 17.174 17.514 -2.6564 34 20 3 0 0 0 0.017075 1 10592 10592 66.457 28.483 1 2559100 2457 2813 1673 1705 2802 2802 491 -0.028953185311252128 APMSAAHQL 9 Unmodified _APMSAAHQL_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MSMS AL20221201_MKP_PDAC_01 4 463.2311401367188 2 463.231645 924.448736 NaN NaN NaN NaN NaN NaN NaN 29.896 1 26.595 26.095 27.095 -3.3016 0 0 0 0.0052483 1 16840 16840 103.35 48.58 1 2458 2813 1673 1706 2803 2803 -0.016510146685163818 APMSALRA 8 Unmodified _APMSALRA_ 0 0 0 REV__ENSG00000187017|ENST00000645284|ESPN REV__ENSG00000187017|ENST00000645284|ESPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.7235412597656 2 408.723455 815.432358 NaN NaN NaN NaN NaN NaN NaN 24.266 1 24.264 23.764 24.764 -0.0016766 0 0 0 0.95607 1 12397 12397 9.3474 2.9933 1 + 2459 23613 1674 1707 2804 2804 0.01725904165391512 APMSEGRGLY 10 Unmodified _APMSEGRGLY_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7609252929688 2 540.760766 1079.50698 -0.31817 -0.00017206 0.12822 6.9339E-05 -0.18995 -0.00010272 540.761119976841 25.861 0.69846 25.861 25.447 26.145 0 39 24 3 0 0 0 0.68719 1 13355 13355 4.3292 0 1 2749900 2460 2669 1675 1708 2805 2805 -0.029593778138632842 APNAGQELL 9 Unmodified _APNAGQELL_ 0 0 0 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.4832763671875 1 912.478522 911.471246 0.26557 0.00024233 0.90821 0.00082872 1.1738 0.001071 912.4793310381197 43.58 0.38409 38.815 38.65 39.034 -4.7648 51 23 3 0 0 0 0.41742 1 26468 26468 11.64 3.047 1 12930000 + 2461 29586 1676 1709 2806 2806 0.01196908000770236 APNAIQTVL 9 Unmodified _APNAIQTVL_ 0 0 0 REV__nc|ENSG00000160058|Q9NW68-9|BSDC1 REV__nc|ENSG00000160058|Q9NW68-9|BSDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7682189941406 2 463.768917 925.523281 1.1596 0.00053781 -1.3877 -0.00064359 -0.2281 -0.00010578 463.76832744996415 54.149 0.392 54.149 53.899 54.291 0 35 17 3 0 0 0 0.2143 1 30109 30109 21.747 2.4897 1 4919400 + 2462 21510 1677 1710 2807 2807 0.057540714145034144 APNEFDVMF 9 Oxidation (M) _APNEFDVM(Oxidation (M))F_ APNEFDVM(1)F APNEFDVM(56)F 0 0 1 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.234375 2 543.23405 1084.45355 0.27725 0.00015061 -0.43081 -0.00023403 -0.15356 -8.3418E-05 543.2339251762545 69.373 0.57259 69.373 69.046 69.618 0 68 25 4 0 0 0 0.028475 1 38688 38688 56.177 7.8312 1 13338000 2463 7194 1678 1711 2808 2808 1248 -0.08530175316400346 APNEFDVMF 9 Unmodified _APNEFDVMF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2363891601562 2 535.236593 1068.45863 1.0887 0.00058273 -0.59619 -0.0003191 0.49256 0.00026363 535.2358838862725 89.117 0.42739 82.941 82.669 83.096 -6.1757 43 23 2 0 0 0 0.30202 1 58849 58849 17.113 3.2068 1 19158000 2464 7194 1678 1712 2809 2809 -0.07285871453791515 APNFIPFW 8 Unmodified _APNFIPFW_ 0 0 0 REV__ENSG00000151388|ENST00000504830|ADAMTS12 REV__ENSG00000151388|ENST00000504830|ADAMTS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2568359375 2 496.255446 990.496338 0.65805 0.00032656 1.7609 0.00087388 2.419 0.0012004 496.25566881339745 28.241 0.67532 25.093 24.935 25.61 -3.1482 45 35 2 0 0 0 0.5953 1 15780 15780 26.341 2.1313 1 13451000 + 2465 21065 1679 1713 2810 2810 0.000710075939878152 APNGTEQLMQ 10 Unmodified _APNGTEQLMQ_ 0 0 0 REV__ENSG00000183454|ENST00000330684|GRIN2A REV__ENSG00000183454|ENST00000330684|GRIN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.5065612792969 3 363.506213 1087.49681 0.033779 1.2279E-05 0.70977 0.00025801 0.74355 0.00027029 363.50643086982745 37.471 0.33019 37.471 37.35 37.68 0 44 17 3 0 0 0 0.67033 1 19910 19910 3.3196 0.88486 1 16982000 + 2466 23348 1680 1714 2811 2811 -0.04343985539117057 APNINRRNEI 10 Unmodified _APNINRRNEI_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000536042.1_1_13:43543884-43566301:-|nuORF;ENST00000540470.5_1_13:43544616-43566301:-|nuORF;ENST00000542706.5_1_13:43543884-43565242:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5540161132812 3 399.554666 1195.64217 0.40229 0.00016074 -0.53777 -0.00021487 -0.13548 -5.4133E-05 399.55463430893025 22.762 0.35601 19.984 19.792 20.148 -2.7784 65 26 3 0 0 0 0.54684 1 12194 12194 16.566 2.951 1 16927000 2467 16196 1681 1715 2812 2812 0.05217238372097199 APNIPHHRAL 10 Unmodified _APNIPHHRAL_ 0 0 0 ENST00000558619.5_1_15:91073804-91136884:+|nuORF ENST00000558619.5_1_15:91073804-91136884:+|nuORF ENST00000558619.5_1_15:91073804-91136884:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.28759765625 2 563.317432 1124.62031 1.0093 0.00056855 2.9915 0.0016852 4.0008 0.0022537 563.3193910808324 100.53 0.28976 94.358 94.141 94.431 -6.1757 26 18 2 0 0 0 0.50944 1 67051 67051 15.847 1.0089 1 162020000 2468 15283 1682 1716 2813 2813 0.0629847841416904 APNISMPDVDL 11 Unmodified _APNISMPDVDL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7412109375 2 586.286814 1170.55907 0.15377 9.0155E-05 -2.2386 -0.0013125 -2.0848 -0.0012223 586.7868621572578 39.479 0.23476 39.479 39.381 39.616 0 19 10 2 0 0 0 0.29414 1 21104 21104 6.2058 2.2614 1 1590300 2469 3826 1683 1717 2814 2814 -0.019382591907742608 APNLGRSFHIL 11 Unmodified _APNLGRSFHIL_ 0 0 0 nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2344055175781 3 408.899773 1223.67749 -0.49451 -0.00020221 0.30956 0.00012658 -0.18495 -7.5628E-05 408.8999017347905 55.744 0.30407 55.675 55.517 55.821 -0.068737 38 15 4 0 0 0 0.29175 1 30243 30243 32.616 21.718 1 27578000 2470 1409 1684 1718 2815 2815 0.07459900899880267 APNLGRSFHIL 11 Unmodified _APNLGRSFHIL_ 0 0 0 nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8997497558594 3 408.899773 1223.67749 1.0063 0.00041149 0.35661 0.00014582 1.3629 0.0005573 408.89972827788955 84.002 0.75369 77.827 77.508 78.262 -6.1757 87 40 3 0 0 0 0.29175 3 55157 55157;55279;55410 22.109 11.21 1 18586000 2471 1409 1684 1718 2816;2817;2818 2816 0.07459900899880267 APNLRKLIY 9 Unmodified _APNLRKLIY_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2261047363281 3 363.225598 1086.65496 NaN NaN NaN NaN NaN NaN NaN 45.285 1 45.257 44.757 45.757 -0.028011 0 0 0 0.63508 1 24320 24320 11.495 4.2055 1 2472 7384 1685 1719 2819 2819 0.11510301502289622 APNLRKLIY 9 Unmodified _APNLRKLIY_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2261657714844 3 363.225598 1086.65496 1.7369 0.00063089 -0.1873 -6.8031E-05 1.5496 0.00056286 363.22543182372596 50.056 0.2866 44.517 44.377 44.663 -5.5391 28 18 2 0 0 0 0.49766 1 31385 31385 7.609 3.6646 1 10863000 2473 7384 1685 1719 2820 2820 0.11510301502289622 APNNRWREEL 10 Unmodified _APNNRWREEL_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;KLF4|p.L319Pfs*4|1|0.31|ENSG00000136826|chr9:107487438-107487439|-/G|frameshift_variant ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.8860778808594 3 428.886304 1283.63708 0.9079 0.00038938 0.38951 0.00016705 1.2974 0.00055644 428.886884223996 34.505 0.33736 30.41 30.196 30.533 -4.0951 29 19 2 0 0 0 0.34435 1 19835 19835 24.882 10.663 1 21649000 2474 4862 1686 1720 2821 2821 0.006609345094602759 APNPAKATVTA 11 Unmodified _APNPAKATVTA_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.790283203125 2 520.790381 1039.56621 0.079791 4.1555E-05 -2.0449 -0.001065 -1.9652 -0.0010234 520.7900608879504 25.207 0.19982 22.324 22.282 22.482 -2.8831 19 12 2 0 0 0 0.06459 1 13849 13849 47.732 26.195 1 2669000 2475 3763 1687 1721 2822 2822 0.04800841471956119 APNSRPALL 9 Unmodified _APNSRPALL_ 0 0 0 nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF nc|ENSG00000064651|P55011-3|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7745971679688 2 469.774534 937.534515 -0.32344 -0.00015195 0.79978 0.00037572 0.47634 0.00022377 469.77472782256285 36.862 0.30149 36.612 36.471 36.773 -0.2497 22 13 3 0 0 0 0.013609 1 19323 19323 70.332 34.205 1 5273200 2476 880 1688 1722 2823 2823 0.06324893508644891 APNSRPALL 9 Unmodified _APNSRPALL_ 0 0 0 nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF nc|ENSG00000064651|P55011-3|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7750244140625 2 469.774534 937.534515 0.65636 0.00030834 1.7059 0.00080139 2.3623 0.0011097 469.7751547560466 40.555 0.5583 36.025 35.685 36.243 -4.5294 51 35 2 0 0 0 0.013609 2 24310 24173;24310 70.332 35.93 1 14703000 2477 880 1688 1722 2824;2825 2825 0.06324893508644891 APNYRLKSL 9 Unmodified _APNYRLKSL_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.5416564941406 3 354.541586 1060.60293 0.22578 8.0049E-05 0.53868 0.00019098 0.76446 0.00027103 354.54172138066866 31.316 0.27579 31.213 31.034 31.309 -0.10269 22 10 3 0 0 0 0.19127 1 16299 16299 28.495 7.6234 1 6815700 2478 10897 1689 1723 2826 2826 0.07505138088527019 APNYRLKSL 9 Unmodified _APNYRLKSL_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.5414733886719 3 354.541586 1060.60293 -0.27873 -9.8822E-05 0.19001 6.7366E-05 -0.088723 -3.1456E-05 354.5416616470266 31.111 0.44014 31.141 30.856 31.296 0.030106 45 18 4 0 0 0 0.23158 1 16277 16277 24.991 11.472 1 17345000 2479 10897 1689 1723 2827 2827 0.07505138088527019 APNYRLKSL 9 Unmodified _APNYRLKSL_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.30810546875 2 531.308741 1060.60293 -0.16212 -8.6138E-05 0.058268 3.0959E-05 -0.10386 -5.5179E-05 531.308750429062 31.103 0.23222 31.133 31.015 31.247 0.030104 15 9 2 0 0 0 0.040683 1 16283 16283 49.554 0 1 1643500 2480 10897 1689 1723 2828 2828 0.07505138088527019 APNYRLKSL 9 Unmodified _APNYRLKSL_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3089599609375 2 531.308741 1060.60293 0.78367 0.00041637 -2.0144 -0.0010703 -1.2307 -0.00065388 531.3085147923132 34.531 0.36385 30.435 30.286 30.65 -4.0951 51 21 3 0 0 0 0.012228 1 19903 19903 74.2 39.268 1 26314000 2481 10897 1689 1723 2829 2829 0.07505138088527019 APNYRLKSL 9 Unmodified _APNYRLKSL_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 354.541586 1060.60293 0.12453 4.4151E-05 0.3989 0.00014143 0.52343 0.00018558 354.54173253995197 31.291 0.24448 31.291 31.174 31.418 0 0.076083 5.2734E-05 NaN 28.495 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1828200 2482 10897 1689 1723 0.07505138088527019 APPAIPPVF 9 Unmodified _APPAIPPVF_ 0 0 0 ENST00000354416.7_1_X:118753668-118753848:-|nuORF ENST00000354416.7_1_X:118753668-118753848:-|nuORF ENST00000354416.7_1_X:118753668-118753848:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 454.7665100097656 2 454.765646 907.516739 NaN NaN NaN NaN NaN NaN NaN 90.741 1 84.565 84.065 85.065 -6.1757 0 0 0 0.54015 1 59953 59953 14.582 3.4672 1 2483 12067 1690 1724 2830 2830 0.05928178253816441 APPAPTLSYVL 11 Unmodified _APPAPTLSYVL_ 0 0 0 REV__ENSG00000187942|ENST00000344642|LDLRAD2 REV__ENSG00000187942|ENST00000344642|LDLRAD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8812561035156 3 376.881497 1127.62266 NaN NaN NaN NaN NaN NaN NaN 29.081 1 29.019 28.519 29.519 -0.062159 0 0 0 0.93737 1 15032 15032 4.4062 2.5619 1 + 2484 23674 1691 1725 2831 2831 0.06395469308608881 APPAQAVH 8 Unmodified _APPAQAVH_ 0 0 0 REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF REV__ENST00000588404.5_1_19:38907704-38910742:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5418701171875 2 395.713945 789.413337 0.84336 0.00033373 -0.60941 -0.00024115 0.23395 9.2577E-05 395.7138440626144 49.969 0.24188 49.577 49.49 49.732 -0.3923 18 11 2 0 0 0 8.7369 1 26868 26868 13.508 3.3245 1 2764500 + 2485 29123 1692 1726 2832 2832 0.010206908659938563 APPARNSAAH 10 Unmodified _APPARNSAAH_ 0 0 0 ENST00000472453.5_1_6:4776866-4954287:+|nuORF ENST00000472453.5_1_6:4776866-4954287:+|nuORF ENST00000472453.5_1_6:4776866-4954287:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2581787109375 2 496.25704 990.499526 -0.26755 -0.00013277 -0.83839 -0.00041606 -1.1059 -0.00054883 496.25643363212686 24.926 0.30636 24.926 24.76 25.067 0 55 31 3 0 0 0 0.27276 1 12711 12711 29.082 29.082 1 5225000 2486 13904 1693 1727 2833 2833 0.0038965070070844376 APPCFFYYL 9 Unmodified _APPCFFYYL_ 0 0 0 ENST00000217909.7_1_X:118540464-118544252:+|nuORF ENST00000217909.7_1_X:118540464-118544252:+|nuORF ENST00000217909.7_1_X:118540464-118544252:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.762939453125 2 560.762246 1119.50994 0.33403 0.00018731 1.1212 0.00062873 1.4552 0.00081604 560.7626702482117 64.254 0.31457 64.254 64.071 64.386 0 36 13 3 0 0 0 0.22317 1 35868 35868 20.871 2.7249 1 2779900 2487 11020 1694 1728 2834 2834 -0.045035026890900554 APPCPLFLF 9 Unmodified _APPCPLFLF_ 0 0 0 REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF REV__ENST00000357529.7_1_12:8850703-8852541:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 502.9309692382812 2 502.767332 1003.52011 NaN NaN NaN NaN NaN NaN NaN 37.754 1 33.385 32.885 33.885 -4.3689 0 0 0 0.54015 1 22191 22191 14.582 2.0501 1 + 2488 25855 1695 1729 2835 2835 0.01849105036160381 APPERPNGVI 10 Unmodified _APPERPNGVI_ 0 0 0 ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.2140197753906 3 350.529458 1048.56654 1.9259 0.00067508 0.66381 0.00023269 2.5897 0.00090777 350.52998873767467 37.628 0.34847 33.259 33.071 33.419 -4.3689 32 20 2 0 0 0 0.23489 1 22145 22145 7.1017 3.5147 1 11004000 2489 9069 1696 1730 2836 2836 0.044202611917853574 APPERYVN 8 Unmodified _APPERYVN_ 0 0 0 REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2421264648438 2 473.243067 944.47158 0.16362 7.743E-05 -0.19194 -9.0835E-05 -0.028327 -1.3405E-05 473.24284427308737 26.637 0.2357 26.665 26.568 26.804 0.028238 16 9 3 0 0 0 0.61462 1 13815 13815 24.674 2.9272 1 11176000 + 2490 26853 1697 1731 2837 2837 -0.0028767227938715223 APPERYVN 8 Unmodified _APPERYVN_ 0 0 0 REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF REV__ENST00000422163.5_1_3:50296096-50296255:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 473.243067 944.47158 0.16362 7.743E-05 -0.19194 -9.0835E-05 -0.028327 -1.3405E-05 473.24284427308737 26.637 0.2357 26.665 26.568 26.804 0.028238 -0.12286 0.00012684 NaN 24.674 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 11176000 + 2491 26853 1697 1731 -0.0028767227938715223 APPEYHRKAV 10 Unmodified _APPEYHRKAV_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8806457519531 3 389.88049 1166.61964 -0.63818 -0.00024881 -0.74516 -0.00029052 -1.3833 -0.00053934 389.8807392046914 14.854 0.2382 14.854 14.708 14.946 0 95 65 2 0 0 0 0.52097 1 7082 7082 13.519 9.1125 1 1854300 2492 9411 1698 1732 2838 2838 0.04299638974453046 APPEYHRKAV 10 Unmodified _APPEYHRKAV_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8814697265625 3 389.88049 1166.61964 0.4862 0.00018956 0.54685 0.00021321 1.0331 0.00040277 389.8808909209652 14.974 0.20776 12.447 12.352 12.56 -2.5273 69 37 2 0 0 0 0.57893 1 7602 7602 14.957 10.768 1 4703600 2493 9411 1698 1732 2839 2839 0.04299638974453046 APPKPPRLHL 10 Unmodified _APPKPPRLHL_ 0 0 0 ENSG00000149798|ENST00000279249|CDC42EP2 ENSG00000149798|ENST00000279249|CDC42EP2 ENSG00000149798|ENST00000279249|CDC42EP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.9009094238281 3 375.901226 1124.68185 0.068856 2.5883E-05 0.40222 0.0001512 0.47108 0.00017708 375.9016079772778 33.607 0.48992 33.636 33.483 33.973 0.028934 29 21 2 0 0 0 0.66652 1 17712 17712 6.6304 2.4409 1 1251600 2494 6037 1699 1733 2840 2840 0.12449410113458725 APPLFPTFIM 10 Unmodified _APPLFPTFIM_ 0 0 0 REV__ENSG00000283594|ENST00000636267|FAM236C REV__ENSG00000283594|ENST00000636267|FAM236C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.851806640625 3 378.540306 1132.59909 0.70804 0.00026802 0.5631 0.00021316 1.2711 0.00048118 378.54104024757083 24.015 0.14024 21.187 21.091 21.231 -2.8273 10 7 2 0 0 0 0.23227 1 13057 13057 6.1918 2.5992 1 2591900 + 2495 24385 1700 1734 2841 2841 0.03809332270429877 APPLRKLLW 9 Unmodified _APPLRKLLW_ 0 0 0 REV__ENST00000534225.1_1_11:112024279-112034806:-|nuORF REV__ENST00000534225.1_1_11:112024279-112034806:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.352783203125 2 547.347669 1092.68079 NaN NaN NaN NaN NaN NaN NaN 104.02 1 103.97 103.47 104.47 -0.048737 0 0 0 0.86004 1 57760 57760 0.6015 0 1 + 2496 28494 1701 1735 2842 2842 0.13815195744564335 APPNSLVSF 9 Unmodified _APPNSLVSF_ 0 0 0 ENSG00000059691|ENST00000263985|GATB ENSG00000059691|ENST00000263985|GATB ENSG00000059691|ENST00000263985|GATB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2473754882812 2 466.247818 930.481082 -0.30361 -0.00014156 -0.47959 -0.00022361 -0.7832 -0.00036517 466.2473864829715 56.748 0.4287 56.263 56.095 56.523 -0.48554 57 21 4 0 0 0 0.020973 1 30875 30875 62.573 14.227 1 11255000 2497 817 1702 1736 2843 2843 0.013060960061352489 APPNSLVSF 9 Unmodified _APPNSLVSF_ 0 0 0 ENSG00000059691|ENST00000263985|GATB ENSG00000059691|ENST00000263985|GATB ENSG00000059691|ENST00000263985|GATB MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2485656738281 2 466.247818 930.481082 1.3806 0.00064371 -1.6007 -0.00074634 -0.22012 -0.00010263 466.24774826885255 64.131 0.86505 57.955 57.45 58.315 -6.1757 95 46 3 0 0 0 0.020973 1 41650 41650 62.573 14.227 1 88125000 2498 817 1702 1736 2844 2844 0.013060960061352489 APPPGPRGW 9 Unmodified _APPPGPRGW_ 0 0 0 REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2 REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7488098144531 2 467.748319 933.482085 -0.060618 -2.8354E-05 0.83556 0.00039083 0.77494 0.00036248 467.7485514134025 37.859 0.21066 37.876 37.753 37.963 0.01704 19 9 3 0 0 0 0.2001 1 20107 20107 23.148 2.2772 1 2910200 + 2499 22833 1703 1737 2845 2845 0.012683551657119096 APPPGPRGW 9 Unmodified _APPPGPRGW_ 0 0 0 REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2 REV__nc|ENSG00000175040|Q9Y4C5-2|CHST2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 467.748319 933.482085 -0.060618 -2.8354E-05 0.83556 0.00039083 0.77494 0.00036248 467.7485514134025 37.859 0.21066 37.876 37.753 37.963 0.01704 0 0 NaN 23.148 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2910200 + 2500 22833 1703 1737 0.012683551657119096 APPPHQSVY 9 Unmodified _APPPHQSVY_ 0 0 0 REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2510986328125 2 498.250892 994.48723 -0.21051 -0.00010489 -0.040939 -2.0398E-05 -0.25145 -0.00012529 498.25085592895465 25.157 0.33546 25.157 25.01 25.346 0 50 17 4 0 0 0 0.06187 1 12940 12940 42.095 9.9776 1 29010000 + 2501 27624 1704 1738 2846 2846 -0.010233857623461518 APPPHQSVY 9 Unmodified _APPPHQSVY_ 0 0 0 REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 498.250892 994.48723 -0.21051 -0.00010489 -0.040939 -2.0398E-05 -0.25145 -0.00012529 498.25085592895465 25.157 0.33546 25.157 25.01 25.346 0 -0.13975 -0.00016435 NaN 42.095 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 29010000 + 2502 27624 1704 1738 -0.010233857623461518 APPPLPAREP 10 Unmodified _APPPLPAREP_ 0 0 0 REV__ENSG00000128564|ENST00000249330|VGF REV__ENSG00000128564|ENST00000249330|VGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2910766601562 2 522.795466 1043.57638 0.24146 0.00012623 -0.24306 -0.00012707 -0.0015983 -8.3561E-07 522.7956752797638 55.238 0.60475 54.76 54.548 55.152 -0.47798 154 28 7 0 0 0 0.63399 1 30073 30073 9.3831 0.035688 1 114300000 + 2503 19615 1705 1739 2847 2847 0.056334491971938405 APPPQPRPQ 9 Unmodified _APPPQPRPQ_ 0 0 0 REV__ENSG00000125207|ENST00000245255|PIWIL1 REV__ENSG00000125207|ENST00000245255|PIWIL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7676391601562 2 494.272158 986.529764 0.37517 0.00018544 -1.9136 -0.00094583 -1.5384 -0.00076039 494.27082495332775 28.343 0.23203 28.372 28.262 28.494 0.029566 16 9 2 0 0 0 0.17275 1 14745 14745 15.847 0 1 2967600 + 2504 19480 1706 1740 2848 2848 0.035960093658900405 APPPRLVEL 9 Unmodified _APPPRLVEL_ 0 0 0 ENST00000417523.5_2_7:98475883-98478746:+|nuORF ENST00000417523.5_2_7:98475883-98478746:+|nuORF ENST00000417523.5_2_7:98475883-98478746:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.3005981445312 2 496.300384 990.586216 -0.3931 -0.0001951 0.081773 4.0584E-05 -0.31133 -0.00015451 496.3003556563522 35.818 0.23853 35.595 35.45 35.688 -0.2224 13 9 2 0 0 0 0.070838 1 18777 18777 39.957 5.8549 1 2402100 2505 13057 1707 1741 2849 2849 0.0905463720255284 APPPRPHGEPS 11 Unmodified _APPPRPHGEPS_ 0 0 0 REV__ENST00000419810.6_1_2:10563224-10563620:+|nuORF REV__ENST00000419810.6_1_2:10563224-10563620:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2890014648438 2 571.291079 1140.56761 NaN NaN NaN NaN NaN NaN NaN 16.93 1 16.935 16.435 17.435 0.0050564 0 0 0 0.93613 1 8513 8513 5.2969 1.7004 1 + 2506 26823 1708 1742 2850 2850 0.0029447556071318104 APPPRPVY 8 Unmodified _APPPRPVY_ 0 0 0 nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6 nc|ENSG00000140479|P29122-5|PCSK6 nc|ENSG00000140479|P29122-5|PCSK6 MSMS AL20221201_MKP_PDAC_01 4 448.7562255859375 2 448.75307 895.491587 NaN NaN NaN NaN NaN NaN NaN 31.089 1 27.393 26.893 27.893 -3.6958 0 0 0 0.85111 1 17582 17582 20.871 5.103 1 2507 5242 1709 1743 2851 2851 0.039661234512209376 APPPTPSLSP 10 Unmodified _APPPTPSLSP_ 0 0 0 ENST00000463608.5_1_22:21830433-21838406:-|nuORF ENST00000463608.5_1_22:21830433-21838406:-|nuORF ENST00000463608.5_1_22:21830433-21838406:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2630920410156 2 482.260925 962.507297 NaN NaN NaN NaN NaN NaN NaN 35.458 1 35.458 34.958 35.958 0 0 0 0 0.61917 1 18747 18747 20.454 1.1966 1 2508 13698 1710 1744 2852 2852 0.02454365177618456 APPQYVLPTY 10 Unmodified _APPQYVLPTY_ 0 0 0 ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8030395507812 2 574.802957 1147.59136 0.82568 0.0004746 0.55161 0.00031707 1.3773 0.00079167 574.8032711609634 64.323 0.31853 63.838 63.696 64.014 -0.48512 19 14 2 0 0 0 0.24625 1 35100 35100 30.637 4.3684 1 732820 2509 984 1711 1745 2853 2853 0.02346896274525534 APPRGWSVSL 10 Unmodified _APPRGWSVSL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2932739257812 2 535.293091 1068.57163 NaN NaN NaN NaN NaN NaN NaN 55.873 1 55.804 55.304 56.304 -0.068737 0 0 0 0.28787 1 30373 30373 43.772 16.144 1 2510 10865 1712 1746 2854 2854 0.04008565054414248 APPRGWSVSL 10 Unmodified _APPRGWSVSL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.293212890625 2 535.293091 1068.57163 1.0133 0.00054242 -1.9038 -0.0010191 -0.89049 -0.00047667 535.2920887350325 61.401 0.26219 55.253 55.116 55.379 -6.1478 21 12 2 0 0 0 0.093652 1 39570 39570 63.961 29.559 1 13797000 2511 10865 1712 1746 2855 2855 0.04008565054414248 APPRKPRPG 9 Unmodified _APPRKPRPG_ 0 0 0 ENST00000579125.1_1_17:62776100-62776705:-|nuORF;ENST00000578036.5_1_17:62775732-62776705:-|nuORF ENST00000579125.1_1_17:62776100-62776705:-|nuORF ENST00000579125.1_1_17:62776100-62776705:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7991333007812 2 488.295968 974.577383 0.40737 0.00019892 0.7989 0.0003901 1.2063 0.00058902 488.29621099561007 23.033 0.12316 23.051 22.992 23.116 0.01749 8 5 2 0 0 0 0.39863 1 11869 11869 12.532 3.1484 1 3667300 2512 15539 1713 1747 2856 2856 0.08907708356753119 APPSRDFL 8 Unmodified _APPSRDFL_ 0 0 0 ENST00000290573.6_1_2:75119127-75119310:+|nuORF ENST00000290573.6_1_2:75119127-75119310:+|nuORF ENST00000290573.6_1_2:75119127-75119310:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7404479980469 2 451.74016 901.465767 -0.35467 -0.00016022 2.6039 0.0011763 2.2493 0.0010161 451.74146762401426 27.612 0.14841 27.612 27.552 27.7 0 10 6 2 0 0 0 0.64035 1 14259 14259 22.453 4.3177 1 886240 2513 11466 1714 1748 2857 2857 0.01109229208952911 APPSRLASAL 10 Unmodified _APPSRLASAL_ 0 0 0 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7884216308594 2 491.787641 981.56073 0.55306 0.00027199 0.25275 0.0001243 0.80581 0.00039629 491.78812553863725 40.21 0.26816 39.913 39.782 40.05 -0.29716 29 12 3 0 0 0 0.17714 1 21233 21233 36.506 6.6656 1 2841300 2514 8406 1715 1749 2858 2858 0.06921162680123416 APPSRLASAL 10 Unmodified _APPSRLASAL_ 0 0 0 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 ENSG00000174276|ENST00000310597|ZNHIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7888488769531 2 491.787641 981.56073 0.54795 0.00026947 0.74131 0.00036457 1.2893 0.00063404 491.788108043282 44.769 0.32249 39.917 39.793 40.115 -4.852 40 23 2 0 0 0 0.14688 1 27341 27341 40.239 7.4535 1 12732000 2515 8406 1715 1749 2859 2859 0.06921162680123416 APPTKSGLT 9 Unmodified _APPTKSGLT_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7459716796875 2 436.247818 870.481082 -0.46367 -0.00020228 -0.27618 -0.00012048 -0.73985 -0.00032276 436.2476743922401 27.065 0.454 27.065 26.761 27.215 0 45 21 3 0 0 0 0.21242 1 13785 13785 5.2307 0 1 9854400 + 2516 19249 1716 1750 2860 2860 0.04066096006135922 APPTQTIDF 9 Unmodified _APPTQTIDF_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2503051757812 2 495.250557 988.486562 -0.034822 -1.7246E-05 0.76267 0.00037771 0.72785 0.00036047 495.25077488120235 71.745 0.33525 71.745 71.548 71.883 0 29 14 3 0 0 0 0.55775 1 40023 40023 3.9444 0.3479 1 2002000 + 2517 23288 1717 1751 2861 2861 -0.008142252020320484 APPVLKRPIL 10 Unmodified _APPVLKRPIL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5823974609375 3 368.581493 1102.72265 NaN NaN NaN NaN NaN NaN NaN 44.756 1 44.734 44.234 45.234 -0.022064 0 0 0 0.44191 1 24022 24022 24.882 15.905 1 2518 4010 1718 1752 2862 2862 0.1753975143308253 APPVRDPV 8 Unmodified _APPVRDPV_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.7425842285156 2 425.742702 849.470852 -0.11714 -4.9871E-05 -0.023217 -9.8845E-06 -0.14036 -5.9756E-05 425.7427479366158 35.614 0.24151 35.614 35.534 35.776 0 20 11 2 0 0 0 0.36356 1 18848 18848 48.346 3.9388 1 3100800 2519 8319 1719 1753 2863 2863 0.040095330715644195 APPVRDPV 8 Unmodified _APPVRDPV_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.7424621582031 2 425.742702 849.470852 0.75202 0.00032017 0.26194 0.00011152 1.014 0.00043169 425.74295766184724 40.496 0.32374 35.967 35.774 36.097 -4.5294 34 19 2 0 0 0 0.32798 1 24125 24125 52.268 12.319 1 9624900 2520 8319 1719 1753 2864 2864 0.040095330715644195 APPYISEE 8 Unmodified _APPYISEE_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MSMS AL20221201_MKP_PDAC_01 4 453.2168579101562 2 453.216183 904.417813 NaN NaN NaN NaN NaN NaN NaN 15.196 1 12.669 12.169 13.169 -2.5273 0 0 0 0.97444 1 7775 7775 2.8892 0 1 + 2521 17726 1720 1754 2865 2865 -0.03821889501750775 APPYPDVNTF 10 Unmodified _APPYPDVNTF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.772216796875 2 560.769114 1119.52368 0.36803 0.00020638 2.004 0.0011238 2.372 0.0013302 560.7706949093518 58.881 0.27089 58.881 58.654 58.924 0 23 11 3 0 0 0 0.2178 1 32814 32814 32.305 18.798 1 4575900 2522 2385 1721 1755 2866 2866 -0.03130553656296797 APPYPDVNTF 10 Unmodified _APPYPDVNTF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7718505859375 2 560.769114 1119.52368 0.50594 0.00028371 1.8601 0.0010431 2.366 0.0013268 560.7701752002267 59.502 0.16766 59.011 58.921 59.089 -0.49079 13 7 2 0 0 0 0.24625 1 32384 32384 30.637 17.129 1 1608800 2523 2385 1721 1755 2867 2867 -0.03130553656296797 APQAPQPAPA 10 Unmodified _APQAPQPAPA_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2586364746094 2 474.250892 946.48723 -0.41885 -0.00019864 1.518 0.00071993 1.0992 0.00052129 474.25111469668076 34.64 0.44367 34.64 34.384 34.827 0 75 22 5 0 0 0 0.33553 1 18344 18344 25.399 9.5521 1 20977000 + 2524 18581 1722 1756 2868 2868 0.011846142376498392 APQERCHY 8 Unmodified _APQERCHY_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7904357910156 2 502.224351 1002.43415 -0.010357 -5.2016E-06 0.26976 0.00013548 0.2594 0.00013028 502.22430747240173 53.96 0.49888 53.494 53.285 53.784 -0.46664 37 24 2 0 0 0 8.7369 1 29151 29151 6.3541 0.59368 1 2531700 + 2525 21151 1723 1757 2869 2869 -0.06697086816654974 APQGVRTTL 9 Unmodified _APQGVRTTL_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MSMS AL20221201_MKP_PDAC_01 4 471.7717895507812 2 471.771991 941.529429 NaN NaN NaN NaN NaN NaN NaN 31.97 1 28.274 27.774 28.774 -3.6958 0 0 0 0.091025 1 18158 18158 45.7 1.8413 1 2526 7374 1724 1758 2870 2870 0.056325896460293734 APQHVVNHL 9 Unmodified _APQHVVNHL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.775634765625 2 507.777608 1013.54066 NaN NaN NaN NaN NaN NaN NaN 44.172 1 44.15 43.65 44.65 -0.022064 0 0 0 0.36554 1 23696 23696 21.747 2.4897 1 2527 6218;14777;14900 1725 1759 2871 2871 0.03443411740170177 APQHWRFR 8 Unmodified _APQHWRFR_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2897338867188 2 549.291217 1096.56788 NaN NaN NaN NaN NaN NaN NaN 19.254 1 19.277 18.777 19.777 0.023106 0 0 0 0.97444 1 9698 9698 2.8892 0.31174 1 + 2528 23757 1726 1760 2872 2872 0.02345940071199948 APQIPARAF 9 Unmodified _APQIPARAF_ 0 0 0 ENSG00000187609|ENST00000340951|EXD3;ENST00000478344.6_1_9:140240296-140248823:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF ENSG00000187609|ENST00000340951|EXD3 ENSG00000187609|ENST00000340951|EXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2562866210938 2 485.777077 969.5396 0.3058 0.00014855 -1.0409 -0.00050565 -0.73512 -0.0003571 485.7766095468986 20.981 0.38768 20.992 20.759 21.146 0.010553 52 28 3 0 0 0 0.53666 1 10718 10718 5.2307 0 1 7765300 2529 9572 1727 1761 2873 2873 0.053611973712691 APQIRSRSL 9 Unmodified _APQIRSRSL_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3035278320312 2 514.30399 1026.59343 0.052095 2.6793E-05 -0.27159 -0.00013968 -0.21949 -0.00011289 514.3038288881974 23.2 0.29241 20.422 20.305 20.597 -2.7784 51 28 2 0 0 0 0.30562 1 12520 12520 16.942 3.0362 1 14683000 2530 1421 1728 1762 2874 2874 0.0811936980298924 APQIYWFCL 9 Unmodified _APQIYWFCL_ 0 0 0 nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7813110351562 2 570.78097 1139.54739 0.33858 0.00019326 0.7244 0.00041347 1.063 0.00060673 570.7814910837435 63.97 0.52264 63.97 63.732 64.255 0 49 21 3 0 0 0 0.53666 1 35605 35605 5.2307 1.6342 1 2231200 2531 7658 1729 1763 2875 2875 -0.016804114234446388 APQLYRRPARA 11 Unmodified _APQLYRRPARA_ 0 0 0 REV__ENST00000429635.1_1_12:47473412-47473730:-|nuORF REV__ENST00000429635.1_1_12:47473412-47473730:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.5871276855469 3 433.586189 1297.73674 1.2216 0.00052968 0.038035 1.6491E-05 1.2597 0.00054618 433.58637123015706 19.838 0.17031 17.182 17.105 17.275 -2.6564 16 10 2 0 0 0 0.69509 1 10528 10528 4.7159 1.1232 1 2138300 + 2532 26951 1730 1764 2876 2876 0.0997779691406322 APQNHTISLFF 11 Unmodified _APQNHTISLFF_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.554931640625 3 425.555784 1273.64552 0.036143 1.5381E-05 -1.4691 -0.00062519 -1.433 -0.00060981 425.5551346795831 29.63 0.22203 29.66 29.589 29.811 0.030104 17 9 3 0 0 0 0.65846 1 15481 15481 4.1166 1.0444 1 3696700 2533 2505 1731 1765 2877 2877 0.0196448842607424 APQPAKPRL 9 Unmodified _APQPAKPRL_ 0 0 0 ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2983093261719 2 489.298176 976.581799 0.63562 0.00031101 -0.074106 -3.626E-05 0.56151 0.00027475 489.2983816195341 22.334 0.26237 19.599 19.471 19.733 -2.7348 22 13 2 0 0 0 0.07916 1 11966 11966 37.974 5.6685 1 2618800 2534 1635 1732 1766 2878 2878 0.09257172779643952 APQPHRHVL 9 Unmodified _APQPHRHVL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2019653320312 3 352.201675 1053.5832 0.86707 0.00030538 0.37909 0.00013352 1.2462 0.0004389 352.20179148378026 15.286 0.19724 12.759 12.69 12.888 -2.5273 73 35 3 0 0 0 0.32871 1 7835 7835 15.248 10.72 1 11013000 2535 10109 1733 1767 2879 2879 0.05854806868410378 APQPPAPTPA 10 Unmodified _APQPPAPTPA_ 0 0 0 ENSG00000105997|ENST00000612286|HOXA3 ENSG00000105997|ENST00000612286|HOXA3 ENSG00000105997|ENST00000612286|HOXA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7514038085938 2 473.753267 945.491981 NaN NaN NaN NaN NaN NaN NaN 24.911 1 24.911 24.411 25.411 0 0 0 0 0.92825 1 12746 12746 6.7232 0.51738 1 2536 2388 1734 1768 2880 2880 0.017054983804200674 APQRPRARTGR 11 Unmodified _APQRPRARTGR_ 0 0 0 ENST00000541765.5_2_12:30904039-30907854:-|nuORF ENST00000541765.5_2_12:30904039-30907854:-|nuORF ENST00000541765.5_2_12:30904039-30907854:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5813293457031 3 422.581438 1264.72248 0.30065 0.00012705 -1.1618 -0.00049094 -0.86112 -0.00036389 422.58081673556734 67.746 0.3643 67.764 67.591 67.955 0.018028 52 17 4 0 0 0 0.72981 1 37172 37172 1.4551 0.67859 1 4579500 2537 15051 1735 1769 2881 2881 0.10071144485755212 APQRSQSPL 9 Unmodified _APQRSQSPL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2666931152344 2 492.267073 982.519593 -0.3597 -0.00017707 -0.22092 -0.00010875 -0.58062 -0.00028582 492.26705400277064 19.996 0.42914 19.996 19.766 20.195 0 107 43 3 0 0 0 0.012668 2 10026 9929;10026 72.968 28.986 1 4213700 2538 6157 1736 1770 2882;2883 2883 0.027634016406636874 APQRSQSPL 9 Unmodified _APQRSQSPL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2668762207031 2 492.267073 982.519593 -0.26121 -0.00012858 0.36499 0.00017967 0.10378 5.109E-05 492.2674229032498 19.885 0.22302 19.914 19.801 20.024 0.028357 19 12 2 0 0 0 0.36964 1 10039 10039 13.906 3.0821 1 535400 2539 6157 1736 1770 2884 2884 0.027634016406636874 APQRSQSPL 9 Unmodified _APQRSQSPL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2676086425781 2 492.267073 982.519593 1.0616 0.0005226 0.11123 5.4754E-05 1.1729 0.00057736 492.2671554417221 21.796 0.42953 19.062 18.844 19.274 -2.7348 56 23 3 0 0 0 0.01958 2 11727 11629;11727 63.961 22.294 1 18143000 2540 6157 1736 1770 2885;2886 2886 0.027634016406636874 APQSAHAAF 9 Unmodified _APQSAHAAF_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MSMS AL20221201_MKP_PDAC_01 4 450.2225646972656 2 450.222134 898.429715 NaN NaN NaN NaN NaN NaN NaN 24.89 1 22.007 21.507 22.507 -2.8831 0 0 0 0.10759 1 13580 13580 41.84 5.7954 1 2541 7454 1737 1771 2887 2887 -0.023562279679140374 APQSFRAEL 9 Unmodified _APQSFRAEL_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7694702148438 2 509.769448 1017.52434 0.0054188 2.7624E-06 0.10301 5.2512E-05 0.10843 5.5274E-05 509.7697535324788 40.571 0.24889 40.571 40.471 40.72 0 21 13 2 0 0 0 0.040683 1 21817 21817 49.554 3.8547 1 4200200 2542 7868 1738 1772 2888 2888 0.01628285783431238 APQSFRAEL 9 Unmodified _APQSFRAEL_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.769448 1017.52434 0.15679 7.9927E-05 -0.44595 -0.00022733 -0.28916 -0.0001474 509.7695143543467 40.898 0.11557 40.595 40.543 40.659 -0.30304 0.011719 -0.00041442 NaN 49.554 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 931520 2543 7868 1738 1772 0.01628285783431238 APQSLILKL 9 Unmodified _APQSLILKL_ 0 0 0 nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6 nc|ENSG00000115221|P18564-2|ITGB6 nc|ENSG00000115221|P18564-2|ITGB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8190612792969 2 491.81841 981.622267 0.69801 0.0003433 0.059779 2.94E-05 0.75779 0.0003727 491.81845939998124 67.319 0.29163 67.337 67.143 67.435 0.018028 33 14 3 0 0 0 0.0087224 1 36917 36917 107.1 34.132 1 4916500 2544 3098 1739 1773 2889 2889 0.1307209437942447 APQSRAAPV 9 Unmodified _APQSRAAPV_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7512512207031 2 448.751059 895.487565 -0.17834 -8.0031E-05 -0.47308 -0.0002123 -0.65142 -0.00029233 448.750972013883 19.415 0.12622 19.415 19.326 19.452 0 12 7 2 0 0 0 0.36964 1 9700 9700 13.906 4.5229 1 241520 + 2545 17359 1740 1774 2890 2890 0.03564033957513857 APQTKYII 8 Unmodified _APQTKYII_ 0 0 0 ENST00000498816.1_1_10:18629789-18787496:+|nuORF ENST00000498816.1_1_10:18629789-18787496:+|nuORF ENST00000498816.1_1_10:18629789-18787496:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.77734375 2 467.273835 932.533118 0.53307 0.00024909 -1.428 -0.00066725 -0.89489 -0.00041816 467.2738144722829 44.353 1.0335 39.501 39.215 40.249 -4.852 145 76 3 0 0 0 0.6895 1 27533 27533 18.135 1.1927 1 70054000 2546 14431 1741 1775 2891 2891 0.06415259419895847 APQWFLAL 8 Unmodified _APQWFLAL_ 0 0 0 REV__ENST00000494995.5_1_1:155580896-155583988:+|nuORF REV__ENST00000494995.5_1_1:155580896-155583988:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2622680664062 2 473.263271 944.511988 -0.91933 -0.00043509 -1.9674 -0.00093108 -2.8867 -0.0013662 473.2624539223618 32.345 0.30904 32.345 32.105 32.414 0 24 15 2 0 0 0 0.5284 1 16827 16827 32.117 5.2333 1 3574400 + 2547 27946 1742 1776 2892 2892 0.037512941110207976 APQWFLAL 8 Unmodified _APQWFLAL_ 0 0 0 REV__ENST00000494995.5_1_1:155580896-155583988:+|nuORF REV__ENST00000494995.5_1_1:155580896-155583988:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.263271 944.511988 0.002661 1.2594E-06 -2.0019 -0.00094745 -1.9993 -0.00094619 473.26242912662354 32.228 0.32632 32.099 31.961 32.287 -0.12915 -0.12309 -1.652E-05 NaN 32.117 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1416600 + 2548 27946 1742 1776 0.037512941110207976 APRAALTRL 9 Unmodified _APRAALTRL_ 0 0 0 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.8046569824219 2 484.803626 967.592698 0.30717 0.00014892 1.2182 0.00059058 1.5254 0.0007395 484.8043201892891 28.45 0.19242 28.48 28.377 28.569 0.029564 15 7 3 0 0 0 0.14 1 14818 14818 29.082 5.061 1 3833500 2549 7763 1743 1777 2893 2893 0.10760575153915397 APRAALTRL 9 Unmodified _APRAALTRL_ 0 0 0 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 MSMS AL20221201_MKP_PDAC_01 4 484.8037719726562 2 484.803626 967.592698 NaN NaN NaN NaN NaN NaN NaN 31.543 1 27.848 27.348 28.348 -3.6958 0 0 0 0.010041 1 17874 17874 92.653 48.795 1 2550 7763 1743 1777 2894 2894 0.10760575153915397 APRAEALPL 9 Unmodified _APRAEALPL_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2770385742188 2 469.276909 936.539266 0.38307 0.00017977 -0.0978 -4.5895E-05 0.28527 0.00013387 469.27688622711526 45.638 0.21025 45.638 45.512 45.722 0 21 10 3 0 0 0 0.10734 1 24873 24873 32.305 6.9062 1 3891100 2551 1584 1744 1778 2895 2895 0.06845777651415119 APRAFGVRL 9 Unmodified _APRAFGVRL_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23;ENST00000568570.1_1_16:31993258-32005419:+|nuORF ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7978820800781 2 493.798343 985.582134 0.15185 7.4981E-05 -0.31876 -0.0001574 -0.16691 -8.242E-05 493.79754948976597 41.4 0.23582 41.398 41.279 41.515 -0.0017891 15 10 2 0 0 0 0.010818 1 22125 22125 78.149 17.76 1 4827800 2552 10911 1745 1779 2896 2896 0.08876592499518665 APRAGPAR 8 Unmodified _APRAGPAR_ 0 0 0 REV__ENST00000332272.8_1_16:75513067-75513235:-|nuORF REV__ENST00000332272.8_1_16:75513067-75513235:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2329711914062 2 398.232836 794.45112 1.2499 0.00049775 -0.59657 -0.00023757 0.65331 0.00026017 398.2324382660861 20.18 0.50563 17.524 17.312 17.818 -2.6564 65 32 3 0 0 0 0.61462 1 10703 10703 24.674 0 1 11839000 + 2553 25608 1746 1780 2897 2897 0.045672018514437696 APRAGPDPRL 10 Unmodified _APRAGPDPRL_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8677368164062 3 350.533202 1048.57778 0.67688 0.00023727 0.72504 0.00025415 1.4019 0.00049142 350.5333532806224 25.859 0.39528 22.908 22.735 23.13 -2.9511 67 25 3 0 0 0 0.14294 2 14135 14135;14245 35.996 23.768 1 39298000 2554 2901 1747 1781 2898;2899 2898 0.05543083285920147 APRAGQPLQL 10 Unmodified _APRAGQPLQL_ 0 0 0 nc|ENSG00000128309|P25325|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;ENSG00000128309|ENST00000429360|MPST nc|ENSG00000128309|P25325|MPST nc|ENSG00000128309|P25325|MPST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8063354492188 2 525.806365 1049.59818 0.04057 2.1332E-05 0.45057 0.00023691 0.49114 0.00025825 525.8065349520273 41.177 0.312 40.874 40.697 41.009 -0.30304 45 14 4 0 0 0 0.095172 2 21755 21755;21861 56.177 32.156 1 20618000 2555 4061 1748 1782 2900;2901 2900 0.07536253945750104 APRAGQPLQL 10 Unmodified _APRAGQPLQL_ 0 0 0 nc|ENSG00000128309|P25325|MPST;ENST00000485587.1_1_22:37419962-37421138:+|nuORF;ENSG00000128309|ENST00000429360|MPST nc|ENSG00000128309|P25325|MPST nc|ENSG00000128309|P25325|MPST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8074951171875 2 525.806365 1049.59818 NaN NaN NaN NaN NaN NaN NaN 40.832 1 40.83 40.33 41.33 -0.0017929 0 0 0 0.34963 1 21791 21791 39.95 19.496 1 2556 4061 1748 1782 2902 2902 0.07536253945750104 APRAKLDGARL 11 Unmodified _APRAKLDGARL_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.9037475585938 3 389.903406 1166.68839 0.50953 0.00019867 -0.69005 -0.00026905 -0.18052 -7.0385E-05 389.9031812871303 24.744 0.28426 21.861 21.739 22.023 -2.8831 21 16 2 0 0 0 0.49156 1 13497 13497 16.838 8.0866 1 4447100 2557 9384 1749 1783 2903 2903 0.11171303274159072 APRALGLSRL 10 Unmodified _APRALGLSRL_ 0 0 0 nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8896484375 3 351.889097 1052.64546 0.1336 4.7013E-05 1.5968 0.0005619 1.7304 0.00060891 351.8895635050401 39.208 0.25964 39.219 39.063 39.323 0.011452 21 11 2 0 0 0 0.6192 1 20898 20898 9.2438 2.6203 1 1259400 2558 7795 1750 1784 2904 2904 0.12124533216751843 APRALLLLL 9 Unmodified _APRALLLLL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.6666870117188 1 979.666264 978.658987 1.0869 0.0010648 -4.2212 -0.0041354 -3.1343 -0.0030705 979.6603918316155 100.21 0.23005 94.032 93.957 94.187 -6.1757 18 13 2 0 0 0 0.013323 1 66956 66956 71.134 6.8973 1 26533000 2559 10298 1751 1785 2905 2905 0.16880390996004735 APRAPGTQF 9 Unmodified _APRAPGTQF_ 0 0 0 nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7532043457031 2 472.751059 943.487565 0.62784 0.00029681 0.46753 0.00022103 1.0954 0.00051784 472.7517806982885 27.997 0.1632 27.95 27.875 28.038 -0.046408 8 5 2 0 0 0 0.19127 1 14462 14462 24.021 8.1734 1 2369500 2560 2255 1752 1786 2906 2906 0.01356033957517866 APRAPQALERY 11 Unmodified _APRAPQALERY_ 0 0 0 ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.9012756347656 3 424.566683 1270.67822 0.63164 0.00026817 1.0451 0.00044372 1.6768 0.00071189 424.5671083481635 29.593 0.13537 29.512 29.44 29.575 -0.080429 9 5 2 0 0 0 0.0062377 1 15336 15336 54.259 43.732 1 6355600 2561 7738 1753 1787 2907 2907 0.05370695548936055 APRAPQALERY 11 Unmodified _APRAPQALERY_ 0 0 0 ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.2196044921875 3 424.566683 1270.67822 0.70449 0.0002991 0.71027 0.00030156 1.4148 0.00060066 424.56695561094534 32.898 0.27167 29.042 28.872 29.144 -3.8562 31 15 3 0 0 0 0.28906 1 18856 18856 16.838 11.791 1 22690000 2562 7738 1753 1787 2908 2908 0.05370695548936055 APRAPRALAAA 11 Unmodified _APRAPRALAAA_ 0 0 0 ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.5487365722656 3 355.548964 1063.62506 0.066197 2.3536E-05 -0.85791 -0.00030503 -0.79172 -0.00028149 355.5487447520618 23.03 0.19961 23.047 22.958 23.157 0.01749 20 9 3 0 0 0 0.47137 1 11857 11857 17.863 4.3445 1 9972900 2563 1748 1754 1788 2909 2909 0.09579362556928572 APRAPRALAAA 11 Unmodified _APRAPRALAAA_ 0 0 0 ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8200073242188 2 532.819807 1063.62506 0.12854 6.8488E-05 -0.67865 -0.0003616 -0.55011 -0.00029311 532.8194826118164 26.13 0.29131 23.178 23.049 23.34 -2.9511 30 16 2 0 0 0 0.047268 1 14322 14322 56.177 27.095 1 11759000 2564 1748 1754 1788 2910 2910 0.09579362556928572 APRAPRALAAA 11 Unmodified _APRAPRALAAA_ 0 0 0 ENSG00000100075|ENST00000215882|SLC25A1;ENST00000470922.5_1_22:19165453-19166237:-|nuORF ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5492858886719 3 355.548964 1063.62506 0.85475 0.00030391 -0.046658 -1.6589E-05 0.8081 0.00028732 355.5489016338592 26.141 0.40161 23.19 23.02 23.422 -2.9511 57 23 3 0 0 0 0.557 1 14330 14330 13.519 3.7544 1 39196000 2565 1748 1754 1788 2911 2911 0.09579362556928572 APRARGGPPGD 11 Unmodified _APRARGGPPGD_ 0 0 0 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7754516601562 2 525.775597 1049.53664 -0.16521 -8.6862E-05 -1.8672 -0.00098172 -2.0324 -0.0010686 525.7756589934143 17.92 0.26497 17.92 17.791 18.056 0 111 43 4 0 0 0 0.50515 1 8874 8874 16.149 1.3108 1 3010500 2566 4614 1755 1789 2912 2912 0.01385322246483156 APRARGGPPGD 11 Unmodified _APRARGGPPGD_ 0 0 0 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.77587890625 2 525.775597 1049.53664 0.89327 0.00046966 -0.63472 -0.00033372 0.25855 0.00013594 525.7753564928581 18.913 0.35758 16.291 16.097 16.454 -2.6215 52 23 3 0 0 0 0.21511 1 9947 9947 31.268 10.815 1 9891700 2567 4614 1755 1789 2913 2913 0.01385322246483156 APRARHLQSL 10 Unmodified _APRARHLQSL_ 0 0 0 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.560302734375 3 383.559751 1147.65742 1.0179 0.00039042 0.45114 0.00017304 1.469 0.00056346 383.5599788088549 18.035 0.18868 15.413 15.301 15.49 -2.6215 26 11 3 0 0 0 0.18439 1 9478 9478 35.612 10.731 1 7152400 2568 3930 1756 1790 2914 2914 0.08950149959923692 APRASSRLSL 10 Unmodified _APRASSRLSL_ 0 0 0 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2091369628906 3 353.208607 1056.60399 0.02698 9.5295E-06 -0.072679 -2.5671E-05 -0.045699 -1.6141E-05 353.20852711599696 21.575 0.23543 21.588 21.457 21.692 0.013796 73 29 3 0 0 0 0.40136 1 11003 11003 14.218 1.3456 1 23173000 + 2569 29971 1757 1791 2915 2915 0.07795352457424087 APRASSRLSL 10 Unmodified _APRASSRLSL_ 0 0 0 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2090148925781 3 353.208607 1056.60399 0.95603 0.00033768 -0.18357 -6.4838E-05 0.77246 0.00027284 353.2085525922415 24.299 0.47818 21.472 21.231 21.709 -2.8273 78 26 4 0 0 0 0.29752 1 13137 13137 18.721 0 1 84839000 + 2570 29971 1757 1791 2916 2916 0.07795352457424087 APRAVFPSI 9 Unmodified _APRAVFPSI_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000482085.1_1_10:90708534-90712518:-|nuORF;ENST00000477812.1_1_7:5569027-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2797546386719 2 479.279452 956.544351 1.0247 0.00049114 -0.29988 -0.00014373 0.72487 0.00034741 479.2791926712916 61.778 0.41947 55.603 55.404 55.823 -6.1757 38 21 2 0 0 0 0.018301 2 39885 39756;39885 65.235 16.889 1 47463000 2571 1163;13679;9641;9849;5538 1758 1792 2917;2918 2918 0.0643408151404401 APRDAYWIAM 10 Unmodified _APRDAYWIAM_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2918701171875 2 597.292233 1192.56991 0.1186 7.084E-05 0.2394 0.00014299 0.358 0.00021383 597.2921686766405 67.863 0.41104 61.687 61.46 61.871 -6.1757 35 23 2 0 0 0 0.49559 1 44235 44235 16.566 3.5234 1 18461000 2572 6115 1759 1793 2919 2919 -0.018668120258553245 APRDIATGL 9 Unmodified _APRDIATGL_ 0 0 0 nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2586669921875 2 457.258717 912.50288 0.41171 0.00018826 -0.61444 -0.00028096 -0.20273 -9.27E-05 457.25826357456367 35.809 0.28215 35.809 35.655 35.937 0 28 13 3 0 0 0 0.044296 1 18919 18919 47.594 1.5734 1 4739100 2573 1531 1760 1794 2920 2920 0.04312900754700877 APREALAQTVL 11 Unmodified _APREALAQTVL_ 0 0 0 ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1 ENST00000473373.1_1_20:34214165-34214426:-|nuORF ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.8367309570312 2 584.837862 1167.66117 0.001034 6.0471E-07 -0.55824 -0.00032648 -0.55721 -0.00032588 584.8373926164847 46.95 0.32658 46.95 46.799 47.125 0 38 15 3 0 0 0 0.33612 1 25664 25664 24.882 2.1453 1 30615000 2574 10479 1761 1795 2921 2921 0.08404774943119264 APREALAQTVL 11 Unmodified _APREALAQTVL_ 0 0 0 ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1 ENST00000473373.1_1_20:34214165-34214426:-|nuORF ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.83837890625 2 584.837862 1167.66117 0.57521 0.0003364 0.046233 2.7039E-05 0.62144 0.00036344 584.837963065435 47.169 0.33313 46.817 46.626 46.959 -0.3526 47 16 4 0 0 0 0.24981 2 25244 25244;25344 29.437 3.169 1 30076000 2575 10479 1761 1795 2922;2923 2922 0.08404774943119264 APREARKSL 9 Unmodified _APREARKSL_ 0 0 0 ENSG00000229544|ENST00000451024|NKX1-2 ENSG00000229544|ENST00000451024|NKX1-2 ENSG00000229544|ENST00000451024|NKX1-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3038330078125 2 514.30399 1026.59343 0.3215 0.00016535 -0.44637 -0.00022957 -0.12487 -6.4221E-05 514.3037376204338 20.64 0.18773 20.651 20.51 20.698 0.010551 15 7 3 0 0 0 0.5029 1 10518 10518 7.2892 0 1 1035300 2576 10606 1762 1796 2924 2924 0.0811936980298924 APREGISQEAL 11 Unmodified _APREGISQEAL_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3109741210938 2 585.809302 1169.60405 0.7413 0.00043426 0.11486 6.7285E-05 0.85616 0.00050155 585.8093996534624 36.698 0.24834 32.414 32.337 32.585 -4.2835 19 14 2 0 0 0 0.33612 1 21462 21462 24.882 7.7687 1 5045600 2577 4898 1763 1797 2925 2925 0.026033076667545174 APREGISQEAL 11 Unmodified _APREGISQEAL_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 585.809302 1169.60405 -1.1964 -0.00070087 -0.46011 -0.00026954 -1.6565 -0.00097041 585.8095711735893 32.374 0.11421 32.374 32.278 32.393 0 -0.098197 -0.00088212 NaN 24.882 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2947200 2578 4898 1763 1797 0.026033076667545174 APREHPFVL 9 Unmodified _APREHPFVL_ 0 0 0 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.8661499023438 3 355.866181 1064.57671 0.36911 0.00013135 1.2434 0.00044249 1.6125 0.00057385 355.8663315553403 40.241 0.32975 39.944 39.804 40.133 -0.29716 45 15 4 0 0 0 0.36964 1 21250 21250 13.615 5.4593 1 8935800 2579 9651 1764 1798 2926 2926 0.04700868917052503 APREHPFVL 9 Unmodified _APREHPFVL_ 0 0 0 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 ENSG00000188342|ENST00000340473|GTF2F2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.866181 1064.57671 0.018705 6.6565E-06 0.40459 0.00014398 0.42329 0.00015064 356.2007664415939 40.049 0.17967 40.049 39.952 40.131 0 0.052426 -0.00060599 NaN 13.615 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1134500 2580 9651 1764 1798 0.04700868917052503 APREHSYVL 9 Unmodified _APREHSYVL_ 0 0 0 nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185 nc|ENSG00000147394|O15231-2|ZNF185 nc|ENSG00000147394|O15231-2|ZNF185 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8571166992188 3 357.857574 1070.55089 -0.54391 -0.00019464 0.20331 7.2755E-05 -0.3406 -0.00012189 357.85759000303415 26.647 0.33608 26.647 26.488 26.824 0 45 15 4 0 0 0 0.36964 1 13777 13777 13.615 2.8154 1 8560000 2581 5844 1765 1799 2927 2927 0.01843974674761739 APREHSYVL 9 Unmodified _APREHSYVL_ 0 0 0 nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185 nc|ENSG00000147394|O15231-2|ZNF185 nc|ENSG00000147394|O15231-2|ZNF185 MSMS AL20221201_MKP_PDAC_01 4 536.2833862304688 2 536.282723 1070.55089 NaN NaN NaN NaN NaN NaN NaN 29.058 1 25.757 25.257 26.257 -3.3016 0 0 0 0.41346 1 16271 16271 19.257 1.122 1 2582 5844 1765 1799 2928 2928 0.01843974674761739 APREKIVILL 10 Unmodified _APREKIVILL_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.534912109375 3 384.588536 1150.74378 1.3249 0.00050956 0.01554 5.9763E-06 1.3405 0.00051553 384.58835595628136 90.051 0.37071 83.876 83.67 84.041 -6.1757 45 20 3 0 0 0 0.23786 1 59363 59363 6.6235 0.84002 1 10706000 2583 10141 1766 1800 2929 2929 0.174437167419228 APRELGLGL 9 Unmodified _APRELGLGL_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2770385742188 2 463.276909 924.539266 0.30075 0.00013933 -0.58717 -0.00027202 -0.28642 -0.00013269 463.27668071624015 52.668 0.37399 52.235 52.044 52.418 -0.43367 41 18 3 0 0 0 0.20507 1 28438 28438 22.658 0.91144 1 16372000 2584 3939 1767 1801 2930 2930 0.07397777651419801 APRELGLGL 9 Unmodified _APRELGLGL_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2772216796875 2 463.276909 924.539266 0.42795 0.00019826 0.39806 0.00018441 0.82601 0.00038267 463.277267384555 58.16 0.4391 52.133 51.888 52.327 -6.0275 44 23 3 0 0 0 0.062454 2 37333 37202;37333 41.956 3.0952 1 47319000 2585 3939 1767 1801 2931;2932 2932 0.07397777651419801 APREPGAVSY 10 Unmodified _APREPGAVSY_ 0 0 0 ENSG00000162736|ENST00000294785|NCSTN;nc|ENSG00000162736|Q92542-2|NCSTN;ENST00000469159.1_1_1:160326803-160328058:+|nuORF ENSG00000162736|ENST00000294785|NCSTN ENSG00000162736|ENST00000294785|NCSTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.766357421875 2 523.766906 1045.51926 NaN NaN NaN NaN NaN NaN NaN 26.148 1 26.148 25.648 26.648 0 0 0 0 0.68184 1 13432 13432 17.443 1.5955 1 2586 6904 1768 1802 2933 2933 -0.0016801807919364364 APREPISTMF 10 Unmodified _APREPISTMF_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8656005859375 3 383.53047 1147.56958 1.0087 0.00038687 0.18784 7.2041E-05 1.1965 0.00045891 383.86481334853346 28.261 0.38783 25.113 24.952 25.34 -3.1482 55 20 3 0 0 0 0.57893 1 15699 15699 14.957 4.1332 1 15420000 + 2587 17997 1769 1803 2934 2934 0.0016976825429537712 APREPPPVEL 10 Unmodified _APREPPPVEL_ 0 0 0 nc|ENSG00000116809|Q13105-3|ZBTB17;ENSG00000116809|ENST00000375743|ZBTB17;nc|ENSG00000116809|Q13105-2|ZBTB17 nc|ENSG00000116809|Q13105-3|ZBTB17 nc|ENSG00000116809|Q13105-3|ZBTB17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8062744140625 2 552.806031 1103.59751 0.26647 0.00014731 0.11768 6.5055E-05 0.38415 0.00021236 552.8061089236419 43.525 0.40745 43.525 43.242 43.649 0 31 19 2 0 0 0 0.23218 2 23669 23555;23669 29.437 14.189 1 4849800 2588 16146 1770 1804 2935;2936 2936 0.04985414506040797 APRERQTMF 9 Unmodified _APRERQTMF_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.1940002441406 3 379.19408 1134.56041 0.30658 0.00011625 0.65799 0.00024951 0.96457 0.00036576 379.19405326091174 25.616 0.21448 22.733 22.568 22.782 -2.8831 23 11 3 0 0 0 0.37578 1 14049 14049 13.615 5.7047 1 3665400 2589 2602 1771 1805 2937 2937 -0.001485803113610018 APRFRARGA 9 Unmodified _APRFRARGA_ 0 0 0 REV__ENST00000510358.5_1_5:176830573-176831188:-|nuORF REV__ENST00000510358.5_1_5:176830573-176831188:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2909851074219 2 501.291217 1000.56788 0.089991 4.5112E-05 -0.37491 -0.00018794 -0.28492 -0.00014283 501.2910217646255 72.879 0.87537 72.921 72.193 73.068 0.041725 62 41 2 0 0 0 0.58865 1 40122 40122 2.0598 0.40713 1 3693700 + 2590 28141 1772 1806 2938 2938 0.06761940071226036 APRGAGVSNF 10 Unmodified _APRGAGVSNF_ 0 0 0 nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU MSMS AL20221201_MKP_PDAC_01 4 488.2543029785156 2 488.253966 974.493378 NaN NaN NaN NaN NaN NaN NaN 30.24 1 26.743 26.243 27.243 -3.497 0 0 0 0.59691 1 17055 17055 21.537 1.0834 1 2591 16036 1773 1807 2939 2939 0.005111324691938535 APRGELYKEL 10 Unmodified _APRGELYKEL_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;ENST00000584561.1_1_17:8109844-8110310:-|nuORF nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.5521545410156 3 392.552151 1174.63462 -0.47102 -0.0001849 -0.21766 -8.5445E-05 -0.68869 -0.00027035 392.55206862992304 33.389 0.18483 33.389 33.285 33.47 0 19 9 3 0 0 0 0.64616 1 17492 17492 8.7518 2.9684 1 4935500 2592 8796 1774 1808 2940 2940 0.05429086051799459 APRGPGAEL 9 Unmodified _APRGPGAEL_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2373962402344 2 434.237784 866.461016 -0.34154 -0.00014831 0.35376 0.00015361 0.012212 5.3031E-06 434.23796052079933 25.658 0.27188 25.658 25.507 25.779 0 28 12 3 0 0 0 0.2324 1 13135 13135 20.415 2.0414 1 3070700 2593 10435 1775 1809 2941 2941 0.022443450661853603 APRGPGAEL 9 Unmodified _APRGPGAEL_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2387390136719 2 434.237784 866.461016 0.8763 0.00038052 0.063226 2.7455E-05 0.93953 0.00040798 434.2378412978315 28.639 0.32852 25.491 25.282 25.61 -3.1482 32 16 3 0 0 0 0.094149 1 15958 15958 34.402 3.1334 1 15529000 2594 10435 1775 1809 2942 2942 0.022443450661853603 APRGPGTVPA 10 Unmodified _APRGPGTVPA_ 0 0 0 ENST00000394426.5_1_12:53625883-53625982:-|nuORF;ENST00000550721.5_1_12:53625883-53626613:-|nuORF;ENST00000550362.5_2_12:53625883-53626360:-|nuORF ENST00000394426.5_1_12:53625883-53625982:-|nuORF ENST00000394426.5_1_12:53625883-53625982:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7586669921875 2 461.758884 921.503215 NaN NaN NaN NaN NaN NaN NaN 20.619 1 20.619 20.119 21.119 0 0 0 0 0.68942 1 10385 10385 17.113 2.2746 1 2595 12737 1776 1810 2943 2943 0.03932320474552853 APRGQRPESAL 11 Unmodified _APRGQRPESAL_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3215942382812 2 591.322911 1180.63127 0.70778 0.00041853 -0.80483 -0.00047592 -0.097049 -5.7387E-05 591.322360415079 18.926 0.31333 16.304 16.126 16.439 -2.6215 50 19 3 0 0 0 0.038431 2 9937 9937;10037 53.404 32.95 1 11286000 2596 10257 1777 1811 2944;2945 2944 0.04817835997801012 APRGQRPESAL 11 Unmodified _APRGQRPESAL_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5500183105469 3 394.551033 1180.63127 1.0543 0.00041596 -0.30617 -0.0001208 0.74808 0.00029516 394.5509242850227 18.907 0.40953 16.286 16.097 16.506 -2.6215 92 26 5 0 0 0 0.61059 1 10096 10096 8.7518 0.90574 1 77732000 2597 10257 1777 1811 2946 2946 0.04817835997801012 APRGTRLSP 9 Unmodified _APRGTRLSP_ 0 0 0 ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7775573730469 2 477.777608 953.540663 0.091429 4.3683E-05 -0.41876 -0.00020008 -0.32734 -0.00015639 477.77742141235234 18.731 0.2422 18.737 18.641 18.883 0.0060463 31 11 4 0 0 0 0.032796 1 9495 9495 53.833 13.883 1 34514000 2598 15034 1778 1812 2947 2947 0.0620341174017085 APRGTRLSP 9 Unmodified _APRGTRLSP_ 0 0 0 ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7787170410156 2 477.777608 953.540663 1.1857 0.00056652 -0.49726 -0.00023758 0.68848 0.00032894 477.7773282065802 20.177 0.50457 17.521 17.294 17.798 -2.6564 107 32 4 0 0 0 0.047788 2 10645 10645;10758 45.7 1.8413 1 239220000 2599 15034 1778 1812 2948;2949 2948 0.0620341174017085 APRGTWSTGL 10 Unmodified _APRGTWSTGL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2750244140625 2 523.274898 1044.53524 0.33874 0.00017726 -0.029707 -1.5545E-05 0.30904 0.00016171 523.2747783855752 40.255 0.27392 40.26 40.128 40.402 0.0050545 28 12 3 0 0 0 0.20195 1 21432 21432 33.445 2.8084 1 4733000 2600 2017 1779 1813 2950 2950 0.014756881576886371 APRGTWSTGL 10 Unmodified _APRGTWSTGL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2741088867188 2 523.274898 1044.53524 NaN NaN NaN NaN NaN NaN NaN 40.402 1 40.407 39.907 40.907 0.0050545 0 0 0 0.81856 1 21543 21543 11.495 0.67078 1 2601 2017 1779 1813 2951 2951 0.014756881576886371 APRGTWSTGL 10 Unmodified _APRGTWSTGL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.275146484375 2 523.274898 1044.53524 0.61096 0.0003197 0.12708 6.6499E-05 0.73804 0.0003862 523.2749824394364 44.919 0.31406 40.067 39.935 40.249 -4.852 38 20 2 0 0 0 0.043225 2 27582 27438;27582 61.602 28.816 1 25109000 2602 2017 1779 1813 2952;2953 2953 0.014756881576886371 APRGTWSTGL 10 Unmodified _APRGTWSTGL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.274898 1044.53524 0.565 0.00029565 -0.84367 -0.00044147 -0.27867 -0.00014582 523.2746378923997 40.603 0.14215 40.3 40.214 40.356 -0.30304 0.091046 -0.000774 NaN 61.602 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1229300 2603 2017 1779 1813 0.014756881576886371 APRHGLQSL 9 Unmodified _APRHGLQSL_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 489.7783203125 2 489.777608 977.540663 NaN NaN NaN NaN NaN NaN NaN 23.62 1 20.793 20.293 21.293 -2.8273 0 0 0 0.12343 1 12794 12794 39.95 11.463 1 2604 10288 1780 1814 2954 2954 0.05099411740195592 APRHPSTNSL 10 Unmodified _APRHPSTNSL_ 0 0 0 ENST00000489477.1_1_6:97344023-97345677:-|nuORF;ENSG00000123545|ENST00000316149|NDUFAF4 ENST00000489477.1_1_6:97344023-97345677:-|nuORF ENST00000489477.1_1_6:97344023-97345677:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.2832641601562 2 540.283254 1078.55196 NaN NaN NaN NaN NaN NaN NaN 17.625 1 15.038 14.538 15.538 -2.5866 0 0 0 0.050526 1 9233 9233 49.527 26.869 1 2605 3716 1781 1815 2955 2955 0.01582189043665494 APRHPSTNSL 10 Unmodified _APRHPSTNSL_ 0 0 0 ENST00000489477.1_1_6:97344023-97345677:-|nuORF;ENSG00000123545|ENST00000316149|NDUFAF4 ENST00000489477.1_1_6:97344023-97345677:-|nuORF ENST00000489477.1_1_6:97344023-97345677:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.8592224121094 3 360.524595 1078.55196 1.1611 0.00041861 -0.10513 -3.7902E-05 1.056 0.00038071 360.5244308968966 17.65 0.17342 15.064 14.987 15.161 -2.5866 33 28 2 0 0 0 0.16785 1 9281 9281 27.088 17.544 1 6654600 2606 3716 1781 1815 2956 2956 0.01582189043665494 APRHVDRSDFF 11 Unmodified _APRHVDRSDFF_ 0 0 0 ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000090060|P51003-2|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA ENSG00000090060|ENST00000216277|PAPOLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.8924865722656 3 449.558187 1345.65273 0.32552 0.00014634 0.70518 0.00031702 1.0307 0.00046336 449.55844344398986 30.906 0.25174 30.803 30.665 30.917 -0.10269 15 9 2 0 0 0 0.68282 1 16047 16047 5.8681 1.462 1 2705400 2607 1547 1782 1816 2957 2957 -0.00626778973492037 APRIALHTAL 10 Unmodified _APRIALHTAL_ 0 0 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.885498046875 3 354.885464 1061.63456 -0.24484 -8.6889E-05 -0.24142 -8.5677E-05 -0.48626 -0.00017257 354.88541414595386 41.471 0.25829 41.469 41.359 41.618 -0.0017929 26 11 3 0 0 0 0.46514 1 22190 22190 20.581 8.4062 1 12713000 2608 4692 1783 1817 2958 2958 0.10621130842446291 APRIALHTAL 10 Unmodified _APRIALHTAL_ 0 0 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8858947753906 3 354.885464 1061.63456 1.3264 0.0004707 0.023383 8.2982E-06 1.3497 0.000479 354.8855041298543 46.008 0.4397 41.053 40.815 41.255 -4.9549 68 28 3 0 0 0 0.42143 1 28314 28314 17.863 8.0989 1 43336000 2609 4692 1783 1817 2959 2959 0.10621130842446291 APRIGYPKPAL 11 Unmodified _APRIGYPKPAL_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9048461914062 3 394.904636 1181.69208 0.28981 0.00011445 -0.9255 -0.00036548 -0.63569 -0.00025104 394.9043680538781 40.714 0.36939 40.719 40.509 40.878 0.0050583 28 17 2 0 0 0 0.67037 1 21757 21757 7.0371 5.1307 1 2170900 2610 5208 1784 1818 2960 2960 0.10849973048016182 APRIGYPKPAL 11 Unmodified _APRIGYPKPAL_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9053344726562 3 394.904636 1181.69208 0.83846 0.00033111 0.28279 0.00011168 1.1213 0.00044279 394.90467560303034 45.535 0.42795 40.58 40.45 40.878 -4.9549 40 28 2 0 0 0 0.25276 1 27986 27986 29.281 23.089 1 10283000 2611 5208 1784 1818 2961 2961 0.10849973048016182 APRIPVTL 8 Unmodified _APRIPVTL_ 0 0 0 ENSG00000011009|ENST00000374514|LYPLA2;ENST00000495365.5_1_1:24119163-24120565:+|nuORF ENSG00000011009|ENST00000374514|LYPLA2 ENSG00000011009|ENST00000374514|LYPLA2 MSMS AL20221201_MKP_PDAC_01 4 433.7770385742188 2 433.776545 865.538538 NaN NaN NaN NaN NaN NaN NaN 61.448 1 55.301 54.801 55.801 -6.1478 0 0 0 0.25072 1 39581 39581 78.149 23.376 1 2612 431 1785 1819 2962 2962 0.10038983002368695 APRKGSFSAL 10 Unmodified _APRKGSFSAL_ 0 0 0 ENSG00000139842|ENST00000375440|CUL4A;ENST00000474116.5_1_13:113863941-113874010:+|nuORF ENSG00000139842|ENST00000375440|CUL4A ENSG00000139842|ENST00000375440|CUL4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2936401367188 2 517.293091 1032.57163 0.60627 0.00031362 -0.32605 -0.00016866 0.28022 0.00014496 517.2928396765419 28.292 0.42746 25.144 24.952 25.38 -3.1482 39 22 2 0 0 0 0.28276 1 15848 15848 28.495 1.6109 1 13120000 2613 5194 1786 1820 2963 2963 0.05664565054416926 APRKGTVWSL 10 Unmodified _APRKGTVWSL_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8217163085938 2 557.822015 1113.62948 0.73989 0.00041273 -0.33236 -0.0001854 0.40753 0.00022733 557.8218532184858 40.615 0.29341 40.62 40.402 40.695 0.0050545 28 13 3 0 0 0 0.17714 1 21657 21657 36.506 11.832 1 3243400 2614 3095 1787 1821 2964 2964 0.0772082697985752 APRKGTVWSL 10 Unmodified _APRKGTVWSL_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8221435546875 2 557.822015 1113.62948 0.75643 0.00042195 0.28282 0.00015776 1.0392 0.00057972 557.8222054497115 43.799 0.47938 39.034 38.755 39.235 -4.7648 64 29 3 0 0 0 0.23548 1 26613 26613 31.268 5.869 1 17183000 2615 3095 1787 1821 2965 2965 0.0772082697985752 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8637084960938 3 366.529458 1096.56654 0.57018 0.00020899 -0.013462 -4.9343E-06 0.55672 0.00020405 366.52941194101925 36.612 0.34773 36.612 36.448 36.796 0 44 16 4 0 0 0 0.08691 2 19395 19395;19500 27.223 10.11 1 9921900 2616 6756 1788 1822 2966;2967 2966 0.022122611917893664 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5295715332031 3 366.529458 1096.56654 -0.36053 -0.00013215 0.46829 0.00017164 0.10776 3.9497E-05 366.529584747114 36.806 0.32462 36.556 36.405 36.729 -0.2497 34 14 3 0 0 0 0.14 1 19309 19309 27.223 15.705 1 7457900 2617 6756 1788 1822 2968 2968 0.022122611917893664 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2891845703125 2 549.290548 1096.56654 -0.37359 -0.00020521 -0.069469 -3.8159E-05 -0.44306 -0.00024337 549.2904631436083 36.826 0.25761 36.576 36.45 36.708 -0.2497 16 11 2 0 0 0 0.14 1 19321 19321 29.082 13.234 1 3171000 2618 6756 1788 1822 2969 2969 0.022122611917893664 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5298461914062 3 366.529458 1096.56654 0.91008 0.00033357 -0.16663 -6.1074E-05 0.74345 0.0002725 366.529396488523 40.045 0.82449 35.515 34.949 35.774 -4.5294 121 63 3 0 0 0 0.094149 2 23895 23755;23895 32.037 13.664 1 76486000 2619 6756 1788 1822 2970;2971 2971 0.022122611917893664 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2902221679688 2 549.290548 1096.56654 0.21459 0.00011787 -0.68907 -0.0003785 -0.47448 -0.00026063 549.2900255648674 40.02 0.34888 35.491 35.323 35.672 -4.5294 56 31 2 0 0 0 0.036857 1 23856 23856 51.63 28.894 1 31829000 2620 6756 1788 1822 2972 2972 0.022122611917893664 APRKPDWDL 9 Unmodified _APRKPDWDL_ 0 0 0 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 ENSG00000160799|ENST00000683445|CCDC12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.290548 1096.56654 0.83896 0.00046084 -0.39434 -0.00021661 0.44462 0.00024423 549.2904437565436 36.622 0.22526 36.622 36.507 36.732 0 0.023029 -6.0455E-05 NaN 29.082 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2738800 2621 6756 1788 1822 0.022122611917893664 APRKPPQAL 9 Unmodified _APRKPPQAL_ 0 0 0 nc|ENSG00000114993|Q9BST9-3|RTKN;nc|ENSG00000114993|Q9BST9-2|RTKN;ENSG00000114993|ENST00000272430|RTKN nc|ENSG00000114993|Q9BST9-3|RTKN nc|ENSG00000114993|Q9BST9-3|RTKN MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2984008789062 2 489.298176 976.581799 1.102 0.0005392 0.13453 6.5827E-05 1.2365 0.00060502 489.2981153764395 20.166 0.51345 17.51 17.189 17.702 -2.6564 64 33 2 0 0 0 0.0041763 3 10704 10595;10704;10825 120.45 68.182 1 7989500 2622 3077 1789 1823 2973;2974;2975 2974 0.09257172779643952 APRKVTAVIY 10 Unmodified _APRKVTAVIY_ 0 0 0 ENSG00000121931|ENST00000369763|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 MSMS AL20221201_MKP_PDAC_01 4 373.2297668457031 3 373.229119 1116.66553 NaN NaN NaN NaN NaN NaN NaN 34.344 1 30.249 29.749 30.749 -4.0951 0 0 0 0.84567 1 19793 19793 10.315 2.3698 1 2623 3610 1790 1824 2976 2976 0.11186284156724469 APRLDSLSPTP 11 Unmodified _APRLDSLSPTP_ 0 0 0 ENST00000463020.1_1_7:127292259-127326828:+|nuORF ENST00000463020.1_1_7:127292259-127326828:+|nuORF ENST00000463020.1_1_7:127292259-127326828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2119445800781 3 385.211906 1152.61389 -0.015519 -5.9781E-06 0.35429 0.00013648 0.33878 0.0001305 385.21195792519086 29.413 0.32656 29.443 29.18 29.507 0.030106 18 15 2 0 0 0 0.5942 1 15342 15342 11.631 1.4808 1 6698800 2624 13690 1791 1825 2977 2977 0.043684956721335766 APRLDSLSPTP 11 Unmodified _APRLDSLSPTP_ 0 0 0 ENST00000463020.1_1_7:127292259-127326828:+|nuORF ENST00000463020.1_1_7:127292259-127326828:+|nuORF ENST00000463020.1_1_7:127292259-127326828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2124328613281 3 385.211906 1152.61389 0.27456 0.00010576 0.81796 0.00031509 1.0925 0.00042085 385.2121827666019 25.763 0.36134 22.812 22.594 22.955 -2.9511 36 22 2 0 0 0 0.5942 1 14121 14121 11.631 1.8671 1 10546000 2625 13690 1791 1825 2978 2978 0.043684956721335766 APRLETKSL 9 Unmodified _APRLETKSL_ 0 0 0 nc|ENSG00000091542|Q6P6C2-1|ALKBH5;nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.8004150390625 2 507.800749 1013.58694 -0.15015 -7.6247E-05 -0.42615 -0.0002164 -0.5763 -0.00029265 507.8006117686294 25.664 0.25123 25.664 25.507 25.758 0 24 11 3 0 0 0 0.13231 1 13168 13168 29.841 3.5724 1 2299300 2626 16074 1792 1826 2979 2979 0.08069431851606623 APRLETKSL 9 Unmodified _APRLETKSL_ 0 0 0 nc|ENSG00000091542|Q6P6C2-1|ALKBH5;nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.2646179199219 2 507.800749 1013.58694 0.6606 0.00033545 -0.45798 -0.00023256 0.20262 0.00010289 507.8005862269503 28.659 0.31076 25.511 25.323 25.633 -3.1482 33 15 3 0 0 0 0.13704 1 15938 15938 20.415 9.615 1 13942000 2627 16074 1792 1826 2980 2980 0.08069431851606623 APRLGLSL 8 Unmodified _APRLGLSL_ 0 0 0 REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.7603759765625 2 413.760895 825.507237 -0.30591 -0.00012657 0.016425 6.7962E-06 -0.28949 -0.00011978 413.76087947538764 55.584 0.30819 55.515 55.358 55.666 -0.068737 39 15 3 0 0 0 0.21098 2 30186 30186;30294 68.081 0 1 46522000 + 2628 27617 1793 1827 2981;2982 2981 0.08750409968274653 APRLGLSL 8 Unmodified _APRLGLSL_ 0 0 0 REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7611083984375 2 413.760895 825.507237 1.2706 0.00052572 -0.28832 -0.0001193 0.98228 0.00040643 413.7606759974616 61.286 0.47207 55.138 54.865 55.337 -6.1478 53 23 3 0 0 0 0.19688 1 39463 39463 71.134 0 1 126510000 + 2629 27617 1793 1827 2983 2983 0.08750409968274653 APRLGLSL 8 Unmodified _APRLGLSL_ 0 0 0 REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 413.760895 825.507237 1.2706 0.00052572 -0.28832 -0.0001193 0.98228 0.00040643 413.7606759974616 61.286 0.47207 55.138 54.865 55.337 -6.1478 -0.23727 5.3771E-05 NaN 71.134 53 23 3 NaN NaN NaN NaN 0 NaN NaN 0 126510000 + 2630 27617 1793 1827 0.08750409968274653 APRLGSRSQSL 11 Unmodified _APRLGSRSQSL_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2226257324219 3 391.222916 1170.64692 0.031264 1.2231E-05 -1.0403 -0.000407 -1.0091 -0.00039476 391.222579289576 21.215 0.12744 21.229 21.194 21.322 0.013796 33 20 2 0 0 0 0.37825 1 10848 10848 18.34 10.053 1 4947900 2631 10164 1794 1828 2984 2984 0.06842122514854054 APRLGSRSQSL 11 Unmodified _APRLGSRSQSL_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2239074707031 3 391.222916 1170.64692 0.52693 0.00020615 0.67568 0.00026434 1.2026 0.00047049 391.2231953050948 24.173 0.34461 21.346 21.124 21.469 -2.8273 48 18 3 0 0 0 0.35681 1 13058 13058 23.964 8.4257 1 19830000 2632 10164 1794 1828 2985 2985 0.06842122514854054 APRLGSRSQSL 11 Unmodified _APRLGSRSQSL_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-4|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3308715820312 2 586.330736 1170.64692 0.17218 0.00010095 0.49836 0.0002922 0.67054 0.00039316 586.3310198220846 24.175 0.14293 21.348 21.213 21.356 -2.8273 12 7 2 0 0 0 0.63534 1 13147 13147 9.544 4.647 1 3067400 2633 10164 1794 1828 2986 2986 0.06842122514854054 APRLHHRE 8 Unmodified _APRLHHRE_ 0 0 0 ENST00000252675.6_1_19:5866654-5867368:-|nuORF ENST00000252675.6_1_19:5866654-5867368:-|nuORF ENST00000252675.6_1_19:5866654-5867368:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2804870605469 2 508.280849 1014.54715 0.14425 7.3319E-05 -1.0756 -0.00054672 -0.93138 -0.0004734 508.28015720033204 90.223 0.43414 89.721 89.492 89.926 -0.50171 50 20 4 0 0 0 0.80992 1 49368 49368 0.69038 0 1 2809600 2634 11152 1795 1829 2987 2987 0.040453496915461074 APRLNSADRPM 11 Oxidation (M) _APRLNSADRPM(Oxidation (M))_ APRLNSADRPM(1) APRLNSADRPM(43) 0 0 1 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2120056152344 3 415.211911 1242.6139 -0.62832 -0.00026088 0.22373 9.2897E-05 -0.40458 -0.00016799 415.2121469689342 17.687 0.29947 17.687 17.492 17.791 0 190 50 5 0 0 0 0.096677 1 8737 8737 42.862 36.628 1 20558000 2635 16471 1796 1830 2988 2988 1821 0.0023017240048375243 APRLNSADRPM 11 Oxidation (M) _APRLNSADRPM(Oxidation (M))_ APRLNSADRPM(1) APRLNSADRPM(49) 0 0 1 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2122192382812 3 415.211911 1242.6139 -0.55122 -0.00022887 0.25482 0.00010581 -0.29639 -0.00012307 415.2121265578552 17.775 0.21703 17.789 17.668 17.885 0.013866 169 43 5 0 0 0 0.058008 1 8816 8816 49.159 37.528 1 18513000 2636 16471 1796 1830 2989 2989 1821 0.0023017240048375243 APRLNSADRPM 11 Oxidation (M) _APRLNSADRPM(Oxidation (M))_ APRLNSADRPM(1) APRLNSADRPM(44) 0 0 1 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3146362304688 2 622.314229 1242.6139 0.58138 0.0003618 -0.41906 -0.00026078 0.16232 0.00010101 622.3142905263018 18.811 0.35761 16.19 15.99 16.348 -2.6215 68 26 3 0 0 0 0.083469 1 9946 9946 44.392 31.349 1 7072000 2637 16471 1796 1830 2990 2990 1821 0.0023017240048375243 APRLNSADRPM 11 Unmodified _APRLNSADRPM_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8802795410156 3 409.880273 1226.61899 -0.40462 -0.00016585 0.3004 0.00012313 -0.10421 -4.2715E-05 410.2148074390877 22.6 0.1668 22.6 22.486 22.653 0 15 7 3 0 0 0 0.58349 1 11508 11508 10.016 8.5611 1 660590 2638 16471 1796 1831 2991 2991 0.014744762630925834 APRLNSADRPM 11 Unmodified _APRLNSADRPM_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2149047851562 3 409.880273 1226.61899 -0.093909 -3.8491E-05 -0.43048 -0.00017645 -0.52439 -0.00021494 409.88022209480863 22.58 0.22803 22.603 22.492 22.72 0.022896 19 9 3 0 0 0 0.063019 1 11481 11481 34.674 28.805 1 2445100 2639 16471 1796 1831 2992 2992 0.014744762630925834 APRLNSADRPM 11 Unmodified _APRLNSADRPM_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8802490234375 3 409.880273 1226.61899 -0.017757 -7.2782E-06 0.6166 0.00025273 0.59884 0.00024545 409.8807407914173 25.708 0.59329 22.757 22.319 22.913 -2.9511 106 34 5 0 0 0 0.0111 2 14109 14001;14109 49.842 43.974 1 192870000 2640 16471 1796 1831 2993;2994 2994 0.014744762630925834 APRLNSADRPM 11 Unmodified _APRLNSADRPM_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8171997070312 2 614.316771 1226.61899 -0.27625 -0.00016971 -0.055678 -3.4204E-05 -0.33193 -0.00020391 614.3170758823196 25.67 0.34194 22.719 22.538 22.88 -2.9511 43 19 3 0 0 0 0.0017085 2 14130 14016;14130 80.896 53.267 1 16005000 2641 16471 1796 1831 2995;2996 2996 0.014744762630925834 APRLPITGL 9 Unmodified _APRLPITGL_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2951049804688 2 469.295102 936.575651 0.58304 0.00027362 -0.29994 -0.00014076 0.28309 0.00013286 469.29484073908975 62.683 0.14403 62.197 62.1 62.244 -0.48617 11 6 2 0 0 0 0.094149 1 34187 34187 34.402 15.145 1 1876600 2642 7642 1797 1832 2997 2997 0.10482654548115988 APRLPITGL 9 Unmodified _APRLPITGL_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.29541015625 2 469.295102 936.575651 0.20794 9.7585E-05 -0.43589 -0.00020456 -0.22794 -0.00010697 469.2948753396207 62.256 0.47112 62.223 61.985 62.456 -0.032787 57 24 3 0 0 0 0.032796 2 33952 33952;34064 53.833 15.859 1 52123000 2643 7642 1797 1832 2998;2999 2998 0.10482654548115988 APRLPITGL 9 Unmodified _APRLPITGL_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2948303222656 2 469.295102 936.575651 0.63711 0.00029899 -0.040597 -1.9052E-05 0.59651 0.00027994 469.2951417725076 67.458 0.87463 61.283 60.962 61.837 -6.1757 110 49 3 0 0 0 0.0094097 4 43828 43828;43955;44083;44223 82.529 30.261 1 99430000 2644 7642 1797 1832 3000;3001;3002;3003 3000 0.10482654548115988 APRLPITGL 9 Unmodified _APRLPITGL_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MSMS AL20221201_MKP_PDAC_01 4 469.2957763671875 2 469.295102 936.575651 NaN NaN NaN NaN NaN NaN NaN 68.325 1 62.15 61.65 62.65 -6.1757 0 0 0 0.074615 1 44587 44587 49.933 11.959 1 2645 7642 1797 1832 3004 3004 0.10482654548115988 APRLPLCLPCS 11 Unmodified _APRLPLCLPCS_ 0 0 0 REV__ENST00000547103.5_1_12:80658901-80658961:+|nuORF REV__ENST00000547103.5_1_12:80658901-80658961:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5439758300781 3 390.543833 1168.60967 0.49412 0.00019298 0.58268 0.00022756 1.0768 0.00042054 390.5440787502619 23.69 0.44443 20.863 20.613 21.058 -2.8273 61 26 3 0 0 0 0.5229 1 12766 12766 8.7518 0 1 28528000 + 2646 28668 1798 1833 3005 3005 0.032109916532135685 APRLQSEVAEL 11 Unmodified _APRLQSEVAEL_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.833251953125 2 606.832777 1211.651 0.34318 0.00020825 0.29431 0.0001786 0.63749 0.00038685 606.8328363382266 47.543 0.3452 47.543 47.362 47.707 0 63 15 5 0 0 0 0.0033762 2 25978 25978;26087 78.06 18.692 1 88249000 2647 9022;15094 1799 1834 3006;3007 3006 0.05364167217908289 APRLQSEVAEL 11 Unmodified _APRLQSEVAEL_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8330688476562 2 606.832777 1211.651 0.36779 0.00022319 -0.049613 -3.0107E-05 0.31818 0.00019308 606.832726822405 53.339 0.46846 47.534 47.318 47.786 -5.8042 85 29 4 0 0 0 0.10142 2 33761 33625;33761 42.312 7.28 1 208670000 2648 9022;15094 1799 1834 3008;3009 3009 0.05364167217908289 APRLQSEVAEL 11 Unmodified _APRLQSEVAEL_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.832777 1211.651 0.70255 0.00042633 0.30118 0.00018276 1.0037 0.00060909 606.8335476491648 47.484 0.13706 47.445 47.361 47.498 -0.038643 -0.062279 0.00025744 NaN 78.06 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 741620 2649 9022;15094 1799 1834 0.05364167217908289 APRLRKGSDAL 11 Unmodified _APRLRKGSDAL_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2352600097656 3 395.235045 1182.6833 0.79352 0.00031363 -0.35014 -0.00013839 0.44338 0.00017524 395.23486998218533 32.78 0.15704 28.923 28.832 28.989 -3.8562 11 8 2 0 0 0 0.63534 1 18766 18766 5.1984 1.3525 1 8067300 2650 8325 1800 1835 3010 3010 0.09926999411550241 APRLWHGCLER 11 Unmodified _APRLWHGCLER_ 0 0 0 REV__nc|ENSG00000130182|Q96SZ4|ZSCAN10 REV__nc|ENSG00000130182|Q96SZ4|ZSCAN10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.5682067871094 3 446.568029 1336.68226 0.65109 0.00029076 1.5033 0.00067132 2.1544 0.00096207 446.56840984220264 27.086 0.32502 24.049 23.836 24.161 -3.0365 35 16 3 0 0 0 0.59689 1 14939 14939 6.2344 0 1 18552000 + 2651 19703 1801 1836 3011 3011 0.027384617709913073 APRNGFAAY 9 Unmodified _APRNGFAAY_ 0 0 0 REV__ENST00000475922.1_1_2:11959598-11964914:+|nuORF REV__ENST00000475922.1_1_2:11959598-11964914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7432556152344 2 483.743234 965.471915 0.78118 0.00037789 -0.28485 -0.0001378 0.49633 0.00024009 483.74313009236266 36.593 0.24506 36.593 36.487 36.732 0 25 11 3 0 0 0 0.32871 1 19417 19417 15.847 1.0089 1 2827900 + 2652 19976 1802 1837 3012 3012 -0.012202525595398583 APRNGFAAY 9 Unmodified _APRNGFAAY_ 0 0 0 REV__ENST00000475922.1_1_2:11959598-11964914:+|nuORF REV__ENST00000475922.1_1_2:11959598-11964914:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 483.743234 965.471915 0.78118 0.00037789 -0.28485 -0.0001378 0.49633 0.00024009 483.74313009236266 36.593 0.24506 36.593 36.487 36.732 0 0 0 NaN 15.847 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2827900 + 2653 19976 1802 1837 -0.012202525595398583 APRNGSGVAL 10 Unmodified _APRNGSGVAL_ 0 0 0 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2625122070312 2 471.261791 940.509028 0.56975 0.0002685 -0.19129 -9.0148E-05 0.37846 0.00017835 471.2617128421219 28.382 0.39824 25.234 25.022 25.421 -3.1482 35 20 2 0 0 0 0.038363 2 15781 15781;15913 63.961 27.833 1 16501000 2654 3645 1803 1838 3013;3014 3013 0.03639418986244891 APRNIHRHVIL 11 Unmodified _APRNIHRHVIL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.602294921875 3 442.60195 1324.78402 0.38587 0.00017079 -0.093251 -4.1273E-05 0.29262 0.00012952 442.60198117776866 18.689 0.1526 18.695 18.594 18.747 0.0060463 20 7 4 0 0 0 0.23097 1 9457 9457 30.431 21.68 1 9572500 2655 5296;15469 1804 1839 3015 3015 0.1346207618507833 APRNIHRHVIL 11 Unmodified _APRNIHRHVIL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.6025085449219 3 442.60195 1324.78402 1.2776 0.00056547 0.23055 0.00010204 1.5082 0.00066751 442.6020725070401 21.711 0.36261 18.976 18.827 19.19 -2.7348 49 19 4 0 0 0 0.17474 1 11615 11615 33.821 24.277 1 10914000 2656 5296;15469 1804 1839 3016 3016 0.1346207618507833 APRNIHRHVIL 11 Unmodified _APRNIHRHVIL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000570217.1_1_16:89972581-89984411:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MSMS AL20221201_MKP_PDAC_01 4 442.6023559570312 3 442.60195 1324.78402 NaN NaN NaN NaN NaN NaN NaN 82.154 1 75.978 75.478 76.478 -6.1757 0 0 0 0.59838 1 53955 53955 20.871 9.2398 1 2657 5296;15469 1804 1839 3017 3017 0.1346207618507833 APRNKISRF 9 Unmodified _APRNKISRF_ 0 0 0 ENST00000436791.1_1_2:228195441-228210989:+|nuORF;nc|ENSG00000168958|Q9GZY8-3|MFF;nc|ENSG00000168958|Q9GZY8|MFF ENST00000436791.1_1_2:228195441-228210989:+|nuORF ENST00000436791.1_1_2:228195441-228210989:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.549560546875 3 363.548964 1087.62506 0.96613 0.00035124 -0.19499 -7.0888E-05 0.77114 0.00028035 363.54898144467535 17.007 0.21123 14.42 14.311 14.522 -2.5866 79 37 3 0 0 0 0.30202 1 8874 8874 16.566 3.0472 1 6158300 2658 13336 1805 1840 3018 3018 0.08475362556941946 APRNPTLTM 9 Oxidation (M) _APRNPTLTM(Oxidation (M))_ APRNPTLTM(1) APRNPTLTM(42) 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7626037597656 2 508.763309 1015.51206 -0.13155 -6.6925E-05 -0.33862 -0.00017228 -0.47016 -0.0002392 508.76321113692796 20.683 0.22186 20.683 20.562 20.784 0 35 14 3 0 0 0 0.06294 1 10397 10397 41.84 7.7372 1 3029800 2659 4346 1806 1841 3019 3019 783 0.00492926048730169 APRNPTLTM 9 Oxidation (M) _APRNPTLTM(Oxidation (M))_ APRNPTLTM(1) APRNPTLTM(76) 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7641906738281 2 508.763309 1015.51206 0.0027174 1.3825E-06 -0.075758 -3.8543E-05 -0.073041 -3.716E-05 508.763326965432 23.287 0.43511 20.509 20.322 20.757 -2.7784 95 36 4 0 0 0 0.011671 2 12510 12510;12622 75.761 23.492 1 23796000 2660 4346 1806 1841 3020;3021 3020 783 0.00492926048730169 APRNSNLREL 10 Unmodified _APRNSNLREL_ 0 0 0 ENST00000307403.6_1_7:155532339-155538302:+|nuORF;ENSG00000184863|ENST00000401878|RBM33 ENST00000307403.6_1_7:155532339-155538302:+|nuORF ENST00000307403.6_1_7:155532339-155538302:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.9035339355469 3 390.551033 1168.63127 -0.39148 -0.00015289 1.3225 0.0005165 0.93101 0.00036361 390.5513424758749 22.209 0.18166 22.209 22.102 22.283 0 16 8 2 0 0 0 0.2383 1 11271 11271 2.6312 0.72486 1 561450 2661 9294 1807 1842 3022 3022 0.053698359977943255 APRNSSLRL 9 Unmodified _APRNSSLRL_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MSMS AL20221201_MKP_PDAC_01 4 507.2959899902344 2 507.296165 1012.57778 NaN NaN NaN NaN NaN NaN NaN 26.76 1 23.724 23.224 24.224 -3.0365 0 0 0 0.18351 1 14781 14781 32.786 0.4802 1 2662 2306 1808 1843 3023 3023 0.07199083285945562 APRPAGSYL 9 Unmodified _APRPAGSYL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2535705566406 2 466.253434 930.492316 0.25037 0.00011674 -0.3093 -0.00014421 -0.058926 -2.7475E-05 466.25328759961974 31.696 0.31734 31.696 31.503 31.82 0 38 15 3 0 0 0 0.078314 1 16479 16479 38.176 18.919 1 4339800 2663 8844 1809 1844 3024 3024 0.024289181002814075 APRPAGSYL 9 Unmodified _APRPAGSYL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2545166015625 2 466.253434 930.492316 0.057165 2.6654E-05 1.0692 0.00049853 1.1264 0.00052518 466.2539751301103 31.636 0.22103 31.507 31.38 31.601 -0.12915 16 8 2 0 0 0 0.08691 1 16454 16454 36.127 12.979 1 2105500 2664 8844 1809 1844 3025 3025 0.024289181002814075 APRPAGSYL 9 Unmodified _APRPAGSYL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2529296875 2 466.253434 930.492316 0.63469 0.00029592 1.785 0.00083228 2.4197 0.0011282 466.2536554022817 35.289 0.4571 31.194 30.991 31.449 -4.0951 60 27 3 0 0 0 0.094149 1 20396 20396 34.402 9.0024 1 27229000 2665 8844 1809 1844 3026 3026 0.024289181002814075 APRPASGPIRP 11 Unmodified _APRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.552490234375 3 373.552485 1117.63563 -0.28784 -0.00010752 -0.031857 -1.19E-05 -0.3197 -0.00011942 373.5524989175884 21.171 0.46979 21.199 20.911 21.381 0.028357 59 23 3 0 0 0 0.0039716 2 10684 10684;10789 64.86 14.213 1 8802400 2666 7624 1810 1845 3027;3028 3027 0.08151345211376793 APRPASGPIRP 11 Unmodified _APRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5524597167969 3 373.552485 1117.63563 0.10004 3.7372E-05 -0.49398 -0.00018453 -0.39393 -0.00014715 373.5523667535127 21.209 0.47389 21.223 20.917 21.39 0.013796 189 61 4 0 0 0 8.4394E-07 3 10819 10722;10819;10918 87.878 30.402 1 68765000 2667 7624 1810 1845 3029;3030;3031 3030 0.08151345211376793 APRPASGPIRP 11 Unmodified _APRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8245849609375 2 559.825089 1117.63563 0.50797 0.00028437 -0.93571 -0.00052383 -0.42774 -0.00023946 559.8244128218479 21.149 0.2426 21.16 21.013 21.256 0.010551 42 32 2 0 0 0 0.58349 1 10769 10769 12.175 2.6308 1 4215400 2668 7624 1810 1845 3032 3032 0.08151345211376793 APRPASGPIRP 11 Unmodified _APRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5522155761719 3 373.552485 1117.63563 0.75456 0.00028187 0.036431 1.3609E-05 0.79099 0.00029548 373.5524798188901 23.883 0.79492 21.056 20.579 21.374 -2.8273 169 46 5 0 0 0 5.8765E-11 3 12813 12813;12922;13040 95.507 23.32 1 236890000 2669 7624 1810 1845 3033;3034;3035 3033 0.08151345211376793 APRPASGPIRP 11 Unmodified _APRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8250732421875 2 559.825089 1117.63563 0.39185 0.00021937 0.10731 6.0076E-05 0.49916 0.00027944 559.825237136621 23.881 0.49547 21.054 20.809 21.305 -2.8273 73 29 3 0 0 0 0.0062377 2 12869 12869;12986 73.196 7.5803 1 18588000 2670 7624 1810 1845 3036;3037 3036 0.08151345211376793 APRPDRLVNRL 11 Unmodified _APRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2618103027344 3 436.261594 1305.76295 0.043365 1.8918E-05 0.21343 9.3111E-05 0.25679 0.00011203 436.26171764306133 30.979 0.53321 31.009 30.69 31.223 0.030106 85 22 5 0 0 0 0.12819 2 16188 16188;16289 27.289 21.421 1 49288000 2671 401 1811 1846 3038;3039 3038 0.12230066085544422 APRPDRLVNRL 11 Unmodified _APRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2615356445312 3 436.261594 1305.76295 0.80834 0.00035265 -0.19333 -8.4342E-05 0.61501 0.0002683 436.2615362940594 35.285 0.51345 31.19 30.935 31.449 -4.0951 112 30 5 0 0 0 0.22582 2 20323 20323;20453 22.109 16.241 1 218570000 2672 401 1811 1846 3040;3041 3040 0.12230066085544422 APRPDRLVNRL 11 Unmodified _APRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.888916015625 2 653.888752 1305.76295 0.58247 0.00038087 -0.54009 -0.00035316 0.04238 2.7712E-05 653.8884678036094 35.279 0.25822 31.184 31.075 31.333 -4.0951 25 15 2 0 0 0 0.15928 1 20461 20461 35.612 21.997 1 10297000 2673 401 1811 1846 3042 3042 0.12230066085544422 APRPDRLVNRL 11 Unmodified _APRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 653.888752 1305.76295 0.19108 0.00012495 -0.2716 -0.0001776 -0.080519 -5.2651E-05 654.3899479560472 31.018 0.22642 31.048 30.904 31.131 0.030106 -0.067827 0.00021643 NaN 35.612 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1076500 2674 401 1811 1846 0.12230066085544422 APRPDSRHHSL 11 Unmodified _APRPDSRHHSL_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.8908996582031 3 424.890048 1271.64832 0.38623 0.00016411 0.7661 0.00032551 1.1523 0.00048961 424.89036897337576 14.452 0.10003 11.949 11.903 12.003 -2.5029 37 16 3 0 0 0 0.0062377 1 7332 7332 54.259 34.633 1 9983000 2675 8039 1812 1847 3043 3043 0.023357566036111166 APRPGLLSL 9 Unmodified _APRPGLLSL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2879333496094 2 462.287277 922.560001 0.86824 0.00040138 -0.80159 -0.00037056 0.066653 3.0813E-05 462.28687030160677 58.08 0.3572 58.014 57.852 58.21 -0.066036 43 17 3 0 0 0 0.039985 2 31699 31590;31699 49.933 6.0747 1 15095000 2676 448 1813 1848 3044;3045 3045 0.09562368031083679 APRPGLLSL 9 Unmodified _APRPGLLSL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2879028320312 2 462.287277 922.560001 0.8668 0.00040071 0.55503 0.00025658 1.4218 0.00065729 462.2874979310743 63.331 0.46893 57.155 57 57.469 -6.1757 48 26 2 0 0 0 0.023481 2 41073 40927;41073 60.074 9.7747 1 29799000 2677 448 1813 1848 3046;3047 3047 0.09562368031083679 APRPGLLSL 9 Unmodified _APRPGLLSL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 462.287277 922.560001 0.12557 5.805E-05 -0.094207 -4.3551E-05 0.031364 1.4499E-05 462.28707864773105 58.471 0.24938 57.98 57.861 58.111 -0.49079 -0.016626 0.00047657 NaN 49.933 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 937460 2678 448 1813 1848 0.09562368031083679 APRPKAPLQL 10 Unmodified _APRPKAPLQL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.229248046875 3 364.229231 1089.66586 -0.31283 -0.00011394 0.16581 6.0395E-05 -0.14701 -5.3546E-05 364.22926822208177 36.555 0.29315 36.577 36.434 36.727 0.021545 31 13 3 0 0 0 0.65023 1 19417 19417 8.4443 0.28878 1 7887500 2679 10865 1814 1849 3048 3048 0.12461703876556385 APRPKAPLQL 10 Unmodified _APRPKAPLQL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2298583984375 3 364.229231 1089.66586 1.1165 0.00040667 1.1471 0.00041779 2.2636 0.00082446 364.2296478573947 40.371 0.37744 35.842 35.672 36.05 -4.5294 40 24 2 0 0 0 0.41822 1 24160 24160 20.581 9.7814 1 15073000 2680 10865 1814 1849 3049 3049 0.12461703876556385 APRPKHKA 8 Unmodified _APRPKHKA_ 0 0 0 REV__ENSG00000109881|ENST00000328697|CCDC34 REV__ENSG00000109881|ENST00000328697|CCDC34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7782592773438 2 452.777411 903.540269 0.28243 0.00012788 -0.6069 -0.00027479 -0.32447 -0.00014691 452.7774470217004 26.137 0.24128 23.186 23.078 23.319 -2.9511 19 13 2 0 0 0 0.5953 1 14358 14358 26.341 12.833 1 6419400 + 2681 18676 1815 1850 3050 3050 0.08464036810983089 APRPPPKPM 9 Unmodified _APRPPPKPM_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26 nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7812194824219 2 495.781305 989.548056 1.1888 0.00058938 -0.093218 -4.6216E-05 1.0956 0.00054316 495.7812459852835 20.268 0.90804 17.575 17.202 18.11 -2.693 126 57 3 0 0 0 0.016184 5 10726 10617;10726;10841;10939;11054 67.344 67.344 1 9218100 2682 9994 1816 1851 3051;3052;3053;3054;3055 3052 0.052864280162452815 APRPPTAAP 9 Unmodified _APRPPTAAP_ 0 0 0 ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90 ENSG00000184939|ENST00000563169|ZFP90 ENSG00000184939|ENST00000563169|ZFP90 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2479248046875 2 439.248152 876.481751 -0.15402 -6.7655E-05 0.84047 0.00036917 0.68644 0.00030152 439.24848481394173 22.623 0.45068 22.623 22.324 22.775 0 38 21 2 0 0 0 0.28023 2 11419 11419;11510 18.146 2.2992 1 1115400 2683 9305 1817 1852 3056;3057 3056 0.03856935445844556 APRPPTAAP 9 Unmodified _APRPPTAAP_ 0 0 0 ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90 ENSG00000184939|ENST00000563169|ZFP90 ENSG00000184939|ENST00000563169|ZFP90 MSMS AL20221201_MKP_PDAC_01 4 439.2483825683594 2 439.248152 876.481751 NaN NaN NaN NaN NaN NaN NaN 25.619 1 22.735 22.235 23.235 -2.8831 0 0 0 0.36957 1 14039 14039 21.537 5.6898 1 2684 9305 1817 1852 3058 3058 0.03856935445844556 APRPPVSAA 9 Unmodified _APRPPVSAA_ 0 0 0 ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF ENSG00000171475|ENST00000323571|WIPF2 ENSG00000171475|ENST00000323571|WIPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2483215332031 2 433.248152 864.481751 0.38637 0.00016739 -0.19537 -8.4642E-05 0.191 8.2752E-05 433.24790035720906 26.225 0.36851 23.274 23.112 23.481 -2.9511 29 20 2 0 0 0 0.040683 1 14449 14449 49.554 5.7819 1 6373500 2685 8105 1818 1853 3059 3059 0.04408935445837869 APRPPVSAA 9 Unmodified _APRPPVSAA_ 0 0 0 ENSG00000171475|ENST00000323571|WIPF2;ENST00000494757.5_1_17:38375603-38434474:+|nuORF ENSG00000171475|ENST00000323571|WIPF2 ENSG00000171475|ENST00000323571|WIPF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 433.248152 864.481751 -0.20799 -9.0111E-05 0.95025 0.00041169 0.74226 0.00032158 433.2485172900997 23.04 0.44041 23.04 22.847 23.287 0 -0.11689 0.00048366 NaN 49.554 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 701650 2686 8105 1818 1853 0.04408935445837869 APRPSTGPHKL 11 Unmodified _APRPSTGPHKL_ 0 0 0 ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000316084.9_1_X:71495497-71496022:-|nuORF ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5562438964844 3 387.556007 1159.64619 0.53922 0.00020898 0.32891 0.00012747 0.86813 0.00033645 387.8906688128779 15.983 0.049105 13.426 13.391 13.44 -2.557 16 12 2 0 0 0 0.24981 1 8227 8227 29.291 24.576 1 4181200 2687 4163 1819 1854 3060 3060 0.07275327865818326 APRPSTGPHKL 11 Unmodified _APRPSTGPHKL_ 0 0 0 ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF;ENST00000316084.9_1_X:71495497-71496022:-|nuORF ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MSMS AL20221201_MKP_PDAC_01 4 387.8907165527344 3 387.556007 1159.64619 NaN NaN NaN NaN NaN NaN NaN 15.935 1 13.378 12.878 13.878 -2.557 0 0 0 0.4916 1 8219 8219 16.137 4.6425 1 2688 4163 1819 1854 3061 3061 0.07275327865818326 APRPVAVAV 9 Unmodified _APRPVAVAV_ 0 0 0 ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2740173339844 2 440.27417 878.533787 0.30261 0.00013323 0.22823 0.00010048 0.53084 0.00023372 440.27422451604616 35.95 0.27883 35.95 35.796 36.074 0 28 13 3 0 0 0 0.095405 1 19016 19016 34.102 3.8776 1 5262300 2689 4162 1820 1855 3062 3062 0.08966098859605154 APRPVAVAV 9 Unmodified _APRPVAVAV_ 0 0 0 ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 440.27417 878.533787 0.64024 0.00028188 0.53829 0.00023699 1.1785 0.00051887 440.2743832384568 40.44 0.41758 35.911 35.695 36.113 -4.5294 -0.019618 0.00013739 NaN 34.102 53 26 3 NaN NaN NaN NaN 0 NaN NaN 0 32990000 2690 4162 1820 1855 0.08966098859605154 APRPYASSL 9 Unmodified _APRPYASSL_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2578735351562 2 481.258717 960.50288 -0.61598 -0.00029645 -2.0201 -0.00097221 -2.6361 -0.0012687 481.25756110984213 30.451 0.22228 30.451 30.324 30.546 0 22 10 3 0 0 0 0.028475 1 15815 15815 56.177 12.319 1 3001800 2691 1605 1821 1856 3063 3063 0.021049007546935172 APRPYASSL 9 Unmodified _APRPYASSL_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2593078613281 2 481.258717 960.50288 0.6916 0.00033284 -0.0095665 -4.604E-06 0.68203 0.00032823 481.25851484353615 30.415 0.23747 30.335 30.232 30.47 -0.080429 11 8 2 0 0 0 0.14 1 15813 15813 29.082 5.061 1 1077500 2692 1605 1821 1856 3064 3064 0.021049007546935172 APRPYASSL 9 Unmodified _APRPYASSL_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2586059570312 2 481.258717 960.50288 1.3574 0.00065324 -0.67642 -0.00032553 0.68095 0.00032771 481.25824817404265 34.092 0.34355 30.107 29.894 30.238 -3.9853 34 18 3 0 0 0 0.036857 1 19561 19561 51.63 9.7902 1 14174000 2693 1605 1821 1856 3065 3065 0.021049007546935172 APRQLGAP 8 Unmodified _APRQLGAP_ 0 0 0 REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2347106933594 2 405.235045 808.455536 -0.41748 -0.00016918 -1.5163 -0.00061445 -1.9338 -0.00078363 405.2341366536366 24.11 0.33776 24.11 23.852 24.19 0 23 16 2 0 0 0 0.57408 1 12319 12319 28.173 1.832 1 1213400 + 2694 29140 1822 1857 3066 3066 0.04364666274364026 APRQPGLMA 9 Oxidation (M) _APRQPGLM(Oxidation (M))A_ APRQPGLM(1)A APRQPGLM(64)A 0 0 1 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7532653808594 2 478.752744 955.490935 -0.16384 -7.8439E-05 0.59637 0.00028552 0.43253 0.00020708 478.7531317539745 22.316 0.42672 22.316 22.102 22.528 0 60 20 4 0 0 0 0.019303 2 11378 11283;11378 64.236 29.835 1 26903000 2695 2404;16464 1823 1858 3067;3068 3068 415 0.011409607398832122 APRQPGLMA 9 Oxidation (M) _APRQPGLM(Oxidation (M))A_ APRQPGLM(1)A APRQPGLM(46)A 0 0 1 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7526550292969 2 478.752744 955.490935 -0.033029 -1.5813E-05 -0.31864 -0.00015255 -0.35167 -0.00016836 478.7526818560003 22.272 0.36997 22.295 22.097 22.467 0.022894 52 16 4 0 0 0 0.047196 1 11354 11354 46.021 18.392 1 11805000 2696 2404;16464 1823 1858 3069 3069 415 0.011409607398832122 APRQPGLMA 9 Oxidation (M) _APRQPGLM(Oxidation (M))A_ APRQPGLM(1)A APRQPGLM(71)A 0 0 1 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7536926269531 2 478.752744 955.490935 0.11843 5.67E-05 -0.72079 -0.00034508 -0.60235 -0.00028838 478.75257232126506 25.096 0.7317 22.213 21.945 22.677 -2.8831 159 57 4 0 0 0 0.013323 3 13595 13595;13709;13821 71.134 23.385 1 186420000 2697 2404;16464 1823 1858 3070;3071;3072 3070 415 0.011409607398832122 APRQPGLMA 9 Unmodified _APRQPGLMA_ 0 0 0 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.755615234375 2 470.755287 939.496021 0.97572 0.00045933 -0.60618 -0.00028536 0.36954 0.00017396 470.75515285860746 32.259 0.60458 28.403 28.11 28.715 -3.8562 104 34 4 0 0 0 0.031062 3 18367 18241;18367;18502 54.774 26.287 1 200610000 2698 2404;16464 1823 1859 3073;3074;3075 3074 0.023852646024920432 APRQPGLMA 9 Unmodified _APRQPGLMA_ 0 0 0 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.755287 939.496021 0.62652 0.00029494 -0.57895 -0.00027254 0.047577 2.2397E-05 470.7548929394698 28.844 0.13985 28.781 28.67 28.81 -0.06216 0.1893 2.2187E-05 NaN 54.774 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1522000 2699 2404;16464 1823 1859 0.023852646024920432 APRQPGLMAQM 11 2 Oxidation (M) _APRQPGLM(Oxidation (M))AQM(Oxidation (M))_ APRQPGLM(1)AQM(1) APRQPGLM(42)AQM(42) 0 0 2 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.300048828125 2 616.299733 1230.58491 -0.10079 -6.2118E-05 2.2526 0.0013883 2.1518 0.0013261 616.3008889151947 20.772 0.13067 20.772 20.698 20.829 0 21 9 3 0 0 0 0.10451 1 10473 10473 41.956 24.843 1 1465500 2700 2404;16464 1824 1860 3076 3076 415;416 -0.021156882201466942 APRQPGLMAQM 11 2 Oxidation (M) _APRQPGLM(Oxidation (M))AQM(Oxidation (M))_ APRQPGLM(1)AQM(1) APRQPGLM(58)AQM(58) 0 0 2 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.30029296875 2 616.299733 1230.58491 -0.21425 -0.00013204 2.1866 0.0013476 1.9723 0.0012156 616.3014803291211 20.649 0.30932 20.677 20.486 20.796 0.028357 46 14 4 0 0 0 0.019459 2 10393 10393;10485 57.722 41.875 1 4406200 2701 2404;16464 1824 1860 3077;3078 3077 415;416 -0.021156882201466942 APRQPGLMAQM 11 2 Oxidation (M) _APRQPGLM(Oxidation (M))AQM(Oxidation (M))_ APRQPGLM(1)AQM(1) APRQPGLM(68)AQM(68) 0 0 2 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3009643554688 2 616.299733 1230.58491 0.0060259 3.7138E-06 0.021249 1.3096E-05 0.027275 1.6809E-05 616.3001452670451 23.339 0.3335 20.561 20.457 20.79 -2.7784 63 20 4 0 0 0 0.010023 3 12623 12584;12623;12731 67.838 55.598 1 8412800 2702 2404;16464 1824 1860 3079;3080;3081 3080 415;416 -0.021156882201466942 APRQPGLMAQM 11 Oxidation (M) _APRQPGLM(Oxidation (M))AQM_ APRQPGLM(1)AQM APRQPGLM(76)AQM(-76) 0 0 1 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9 ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3025512695312 2 608.302275 1214.59 0.45546 0.00027706 -1.0009 -0.00060883 -0.5454 -0.00033177 608.3018538144976 35.504 0.47067 31.311 31.023 31.493 -4.1928 66 28 3 0 0 0 1.3386E-08 2 20481 20481;20620 106.94 87.27 2 14391000 2703 2404;16464 1824 1861 3082;3083 3082 415;416 -0.008713843575378633 APRQPPRHL 9 Unmodified _APRQPPRHL_ 0 0 0 ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.877197265625 3 357.877192 1070.60975 0.84612 0.00030281 0.0049647 1.7768E-06 0.85108 0.00030458 357.87725393985966 15.797 0.15117 13.27 13.183 13.334 -2.5273 64 38 3 0 0 0 0.07916 1 8111 8111 28.495 8.8686 1 2867800 2704 10388 1825 1862 3084 3084 0.07726495759743557 APRQTRRDGRR 11 Unmodified _APRQTRRDGRR_ 0 0 0 ENST00000404976.5_1_2:37571756-37586754:+|nuORF;ENST00000338415.7_1_2:37571723-37579999:+|nuORF ENST00000404976.5_1_2:37571756-37586754:+|nuORF ENST00000404976.5_1_2:37571756-37586754:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.9279479980469 3 456.927497 1367.76066 NaN NaN NaN NaN NaN NaN NaN 19.483 1 16.827 16.327 17.327 -2.6564 0 0 0 0.92939 1 10324 10324 5.8681 1.1522 1 2705 11938 1826 1863 3085 3085 0.09149030400431002 APRQVGVY 8 Unmodified _APRQVGVY_ 0 0 0 nc|ENSG00000167770|Q96FW1-2|OTUB1 nc|ENSG00000167770|Q96FW1-2|OTUB1 nc|ENSG00000167770|Q96FW1-2|OTUB1 MSMS AL20221201_MKP_PDAC_01 4 445.2484130859375 2 445.248152 888.481751 NaN NaN NaN NaN NaN NaN NaN 37.474 1 33.19 32.69 33.69 -4.2835 0 0 0 0.73801 1 21996 21996 26.341 1.6674 1 2706 16361 1827 1864 3086 3086 0.033049354458512425 APRRGPALL 9 Unmodified _APRRGPALL_ 0 0 0 ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6 ENSG00000225830|ENST00000355832|ERCC6;nc|ENSG00000225830|P0DP91|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 MSMS AL20221201_MKP_PDAC_01 4 475.7993774414062 2 475.798343 949.582134 NaN NaN NaN NaN NaN NaN NaN 30.795 1 27.298 26.798 27.798 -3.497 0 0 0 0.011967 1 17406 17406 89.427 42.506 1 2707 10585;16552 1828 1865 3087 3087 0.10532592499521343 APRRIGPL 8 Unmodified _APRRIGPL_ 0 0 0 REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.2804260253906 2 440.279786 878.54502 NaN NaN NaN NaN NaN NaN NaN 24.078 1 21.25 20.75 21.75 -2.8273 0 0 0 0.70013 1 13081 13081 28.173 0 1 + 2708 28731 1829 1866 3088 3088 0.10088920953751312 APRRLPPLQSP 11 Unmodified _APRRLPPLQSP_ 0 0 0 ENST00000464324.5_1_11:64496468-64497660:-|nuORF ENST00000464324.5_1_11:64496468-64497660:-|nuORF ENST00000464324.5_1_11:64496468-64497660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8741760253906 3 411.247173 1230.71969 -0.34069 -0.00014011 0.68925 0.00028345 0.34856 0.00014334 411.2474866726782 30.887 0.25591 30.917 30.759 31.015 0.030106 20 10 3 0 0 0 0.30445 1 16144 16144 4.4062 0 1 2034600 2709 13715 1830 1867 3089 3089 0.11355876308289226 APRRNEDFVLL 11 Unmodified _APRRNEDFVLL_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.9139709472656 3 443.913971 1328.72008 0.28185 0.00012512 -0.26604 -0.0001181 0.015812 7.019E-06 443.91392553115105 52.99 0.26369 52.538 52.4 52.663 -0.45173 31 13 3 0 0 0 0.60536 1 28632 28632 11.065 5.1971 1 2823100 2710 481 1831 1868 3090 3090 0.06887251237480996 APRRPVHK 8 Unmodified _APRRPVHK_ 0 0 0 ENST00000377989.8_2_6:25115289-25137913:-|nuORF ENST00000377989.8_2_6:25115289-25137913:-|nuORF ENST00000377989.8_2_6:25115289-25137913:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2776489257812 2 480.796135 959.577717 0.15819 7.6058E-05 2.9917 0.0014384 3.1499 0.0015144 480.79763368377644 41.139 0.17054 41.138 41.03 41.2 -0.0017891 10 7 2 0 0 0 8.7369 1 21935 21935 13.508 0.97634 1 1200300 2711 12536 1832 1869 3091 3091 0.0963112807660309 APRRTQPL 8 Unmodified _APRRTQPL_ 0 0 0 REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF REV__ENST00000522965.1_1_8:90770176-90802641:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.7798156738281 2 469.780151 937.545748 NaN NaN NaN NaN NaN NaN NaN 31.945 1 28.25 27.75 28.75 -3.6958 0 0 0 0.88073 1 18144 18144 19.439 1.304 1 + 2712 28308 1833 1870 3092 3092 0.0744771560279105 APRRVHLFV 9 Unmodified _APRRVHLFV_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5574035644531 3 365.55757 1093.65088 1.5201 0.00055567 -0.43533 -0.00015914 1.0847 0.00039653 365.55741651096434 85.83 0.49924 79.654 79.424 79.924 -6.1757 59 27 3 0 0 0 0.34134 1 56470 56470 15.248 7.093 1 19139000 2713 16188 1834 1871 3093 3093 0.10780256799216659 APRRWIPV 8 Unmodified _APRRWIPV_ 0 0 0 REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8008422851562 2 497.800886 993.587219 0.38793 0.00019311 0.61885 0.00030806 1.0068 0.00050117 497.8010622209629 48.682 0.31633 48.638 48.455 48.772 -0.04369 48 15 4 0 0 0 0.77907 1 26234 26234 10.183 10.183 1 13613000 + 2714 28113 1835 1872 3094 3094 0.090168963621295 APRSAKPAL 9 Unmodified _APRSAKPAL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7763671875 2 455.777077 909.5396 NaN NaN NaN NaN NaN NaN NaN 17.08 1 17.08 16.58 17.58 0 0 0 0 0.84737 1 8387 8387 1.8442 1.0506 1 2715 4412 1836 1873 3095 3095 0.08121197371269773 APRSAKPAL 9 Unmodified _APRSAKPAL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7778625488281 2 455.777077 909.5396 -0.66354 -0.00030243 0.40376 0.00018403 -0.25978 -0.0001184 455.77733852410995 17.35 0.086258 17.364 17.32 17.406 0.013866 30 23 2 0 0 0 0.41742 1 8616 8616 11.64 3.7301 1 724500 2716 4412 1836 1873 3096 3096 0.08121197371269773 APRSAKPAL 9 Unmodified _APRSAKPAL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7775268554688 2 455.777077 909.5396 0.6265 0.00028554 0.37656 0.00017163 1.0031 0.00045717 455.7772756403804 17.865 0.26015 15.278 15.161 15.421 -2.5866 52 21 3 0 0 0 0.06294 2 9332 9332;9442 41.84 14.956 1 9457800 2717 4412 1836 1873 3097;3098 3097 0.08121197371269773 APRSAKPALL 10 Unmodified _APRSAKPALL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3193969726562 2 512.319109 1022.62366 0.53122 0.00027216 -0.19716 -0.00010101 0.33406 0.00017115 512.3189251709789 27.445 0.17895 27.474 27.375 27.554 0.028664 12 7 2 0 0 0 0.1899 1 14273 14273 34.932 8.6639 1 5302600 2718 4412 1837 1874 3099 3099 0.11325728468182206 APRSAKPALL 10 Unmodified _APRSAKPALL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.3194580078125 2 512.319109 1022.62366 0.48852 0.00025028 -0.40368 -0.00020681 0.084839 4.3465E-05 512.3191835162453 30.091 0.36416 26.594 26.393 26.757 -3.497 27 17 2 0 0 0 0.014503 2 16907 16907;16974 80.676 24.499 1 33210000 2719 4412 1837 1874 3100;3101 3100 0.11325728468182206 APRSDELGPPI 11 Unmodified _APRSDELGPPI_ 0 0 0 REV__ENST00000546139.5_1_11:64037587-64037839:+|nuORF REV__ENST00000546139.5_1_11:64037587-64037839:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2015686035156 3 384.540022 1150.59824 0.040374 1.5526E-05 2.1319 0.00081979 2.1722 0.00083531 384.54035978196623 28.887 0.544 28.917 28.73 29.274 0.030106 45 22 3 0 0 0 0.30145 1 15012 15012 7.0371 5.9656 1 3689800 + 2720 28657 1838 1875 3102 3102 0.028962091551193225 APRSLLLLL 9 Unmodified _APRSLLLLL_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.334228515625 2 498.334227 994.653902 0.20709 0.0001032 0.4555 0.00022699 0.66259 0.00033019 498.33437676911524 88.472 0.32915 88.525 88.379 88.708 0.053352 28 13 3 0 0 0 0.013041 1 49191 49191 71.922 0 1 30559000 2721 10315 1839 1876 3103 3103 0.15636087133384535 APRSRQGHL 9 Unmodified _APRSRQGHL_ 0 0 0 REV__ENST00000447937.1_1_Y:21230620-21239046:-|nuORF REV__ENST00000447937.1_1_Y:21230620-21239046:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.1961975097656 2 511.286131 1020.55771 0.50418 0.00025778 0.054846 2.8042E-05 0.55902 0.00028582 511.7873124034365 73.234 0.33186 73.275 73.184 73.516 0.041725 17 14 2 0 0 0 0.21242 1 40435 40435 5.2307 0 1 2181200 + 2722 27168 1840 1877 3104 3104 0.048253323459903186 APRSSGLPL 9 Unmodified _APRSSGLPL_ 0 0 0 REV__ENST00000451963.1_2_7:99818046-99818860:+|nuORF REV__ENST00000451963.1_2_7:99818046-99818860:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2616271972656 2 449.261259 896.507966 1.3066 0.00058702 -0.44404 -0.00019949 0.8626 0.00038753 449.2611205053171 37.084 0.48293 32.801 32.524 33.007 -4.2835 95 29 4 0 0 0 0.14602 1 21826 21826 28.487 5.7506 1 111960000 + 2723 27212 1841 1878 3105 3105 0.05557204617343814 APRSTGPGASL 11 Unmodified _APRSTGPGASL_ 0 0 0 ENSG00000165215|ENST00000395145|CLDN3 ENSG00000165215|ENST00000395145|CLDN3 ENSG00000165215|ENST00000395145|CLDN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2726745605469 2 507.272355 1012.53016 0.019756 1.0022E-05 0.98849 0.00050143 1.0082 0.00051146 507.27280551578946 23.345 0.59156 23.345 22.938 23.529 0 74 29 3 0 0 0 0.072475 1 11904 11904 46.022 11.621 1 8855800 2724 7310 1842 1879 3106 3106 0.024393842950985345 APRSTGPGASL 11 Unmodified _APRSTGPGASL_ 0 0 0 ENSG00000165215|ENST00000395145|CLDN3 ENSG00000165215|ENST00000395145|CLDN3 ENSG00000165215|ENST00000395145|CLDN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2721862792969 2 507.272355 1012.53016 0.041062 2.0829E-05 -0.75701 -0.00038401 -0.71595 -0.00036318 507.27203645430325 26.099 0.4498 23.148 22.955 23.405 -2.9511 70 26 4 0 0 0 0.02135 2 14406 14287;14406 57.108 22.176 1 46641000 2725 7310 1842 1879 3107;3108 3108 0.024393842950985345 APRSWARCL 9 Carbamidomethyl (C) _APRSWARC(Carbamidomethyl (C))L_ APRSWARC(1)L APRSWARC(41)L 0 1 0 ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF ENSG00000173653|ENST00000309657|RCE1 ENSG00000173653|ENST00000309657|RCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8623962402344 3 372.862554 1115.56583 1.3256 0.00049426 -1.4262 -0.00053177 -0.10058 -3.7504E-05 372.8618846304993 34.463 0.31253 30.368 30.16 30.473 -4.0951 29 17 2 0 0 0 0.067618 1 19810 19810 40.725 26.819 1 17128000 2726 8351 1843 1880 3109 3109 802 0.012671432710931185 APRTFGLTL 9 Unmodified _APRTFGLTL_ 0 0 0 ENST00000475987.1_1_3:184944632-184971810:-|nuORF;ENSG00000113790|ENST00000231887|EHHADH ENST00000475987.1_1_3:184944632-184971810:-|nuORF ENST00000475987.1_1_3:184944632-184971810:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.285888671875 2 488.284734 974.554916 0.5345 0.00026099 0.65641 0.00032051 1.1909 0.0005815 488.2850912785628 61.169 0.25215 61.126 60.987 61.239 -0.043507 20 12 2 0 0 0 0.13231 1 33359 33359 29.841 2.9569 1 7639300 2727 3001 1844 1881 3110 3110 0.06662064168460802 APRTFGLTL 9 Unmodified _APRTFGLTL_ 0 0 0 ENST00000475987.1_1_3:184944632-184971810:-|nuORF;ENSG00000113790|ENST00000231887|EHHADH ENST00000475987.1_1_3:184944632-184971810:-|nuORF ENST00000475987.1_1_3:184944632-184971810:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.284734 974.554916 0.5345 0.00026099 0.65641 0.00032051 1.1909 0.0005815 488.2850912785628 61.169 0.25215 61.126 60.987 61.239 -0.043507 0 0 NaN 29.841 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 7639300 2728 3001 1844 1881 0.06662064168460802 APRTLLLLL 9 Unmodified _APRTLLLLL_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3428039550781 2 505.342052 1008.66955 -0.15657 -7.9124E-05 -0.40957 -0.00020698 -0.56615 -0.0002861 505.34219233139396 85.958 0.22086 86.02 85.853 86.074 0.061638 16 11 2 0 0 0 0.011671 1 47610 47610 75.761 7.6801 1 37155000 2729 10398;16517 1845 1882 3111 3111 0.16556373650416845 APRTPGRHGL 10 Unmodified _APRTPGRHGL_ 0 0 0 nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4;nc|ENSG00000139132|Q96M96-3|FGD4 nc|ENSG00000139132|Q96M96|FGD4 nc|ENSG00000139132|Q96M96|FGD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5375366210938 3 354.536946 1060.58901 0.85842 0.00030434 0.51556 0.00018278 1.374 0.00048712 354.53712645995387 15.348 0.24832 12.821 12.7 12.948 -2.5273 143 47 4 0 0 0 0.1379 1 7845 7845 41.347 27.732 1 20472000 2730 5125 1846 1883 3112 3112 0.06113905380084361 APRTRKTT 8 Unmodified _APRTRKTT_ 0 0 0 ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2 ENSG00000159753|ENST00000334583|CARMIL2 ENSG00000159753|ENST00000334583|CARMIL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7701721191406 2 465.777608 929.540663 0.42653 0.00019867 0.17019 7.927E-05 0.59672 0.00027794 465.77773988502764 83.684 0.61386 83.186 82.938 83.552 -0.49751 58 25 3 0 0 0 8.7369 1 45938 45938 2.8892 2.8892 1 10832000 2731 6672 1847 1884 3113 3113 0.07307411740168845 APRTVLLLL 9 Unmodified _APRTVLLLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.6593017578125 1 995.661178 994.653902 0.73641 0.00073322 -1.2722 -0.0012667 -0.53577 -0.00053345 995.6591135291011 98.539 0.093552 92.363 92.308 92.401 -6.1757 8 6 2 0 0 0 0.0086209 1 65392 65392 89.401 22.944 1 13858000 2732 10636 1848 1885 3114 3114 0.15636087133384535 APRVASRNLF 10 Unmodified _APRVASRNLF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5526123046875 3 377.552485 1129.63563 0.126 4.757E-05 0.35532 0.00013415 0.48132 0.00018172 377.5528339463365 34.013 0.21775 34.042 33.907 34.125 0.028934 22 9 3 0 0 0 0.16688 1 17910 17910 33.632 20.097 1 3212300 2733 2242 1849 1886 3115 3115 0.07599345211338004 APRVENPLLE 10 Unmodified _APRVENPLLE_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8812561035156 3 379.880267 1136.61897 1.6827 0.00063923 -0.020896 -7.938E-06 1.6618 0.00063129 379.8801975025028 37.208 0.78046 32.924 32.557 33.338 -4.2835 170 47 5 0 0 0 0.44171 1 21660 21660 17.049 7.8048 1 1655199999.9999998 + 2734 18186 1850 1887 3116 3116 0.05612799534765145 APRVERNRT 9 Unmodified _APRVERNRT_ 0 0 0 REV__ENSG00000172803|ENST00000308342|SNX32 REV__ENSG00000172803|ENST00000308342|SNX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8764038085938 3 366.875739 1097.60539 -0.20559 -7.5427E-05 3.911 0.0014348 3.7054 0.0013594 366.87676236124383 30.912 0.2541 30.942 30.783 31.037 0.030104 28 10 4 0 0 0 0.21643 1 16200 16200 15.739 3.5639 1 2171500 + 2735 22677 1851 1888 3117 3117 0.06048986546170454 APRVLQQTL 9 Unmodified _APRVLQQTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.3089599609375 2 513.308741 1024.60293 -0.046328 -2.378E-05 -0.34027 -0.00017467 -0.3866 -0.00019845 513.3087689276781 40.487 0.15331 40.487 40.412 40.565 0 10 7 2 0 0 0 0.03568 1 21767 21767 52.268 19.963 1 2775600 2736 10362 1852 1889 3118 3118 0.09161138088529697 APRVLQQTL 9 Unmodified _APRVLQQTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.3082885742188 2 513.308741 1024.60293 0.42284 0.00021705 0.055185 2.8327E-05 0.47803 0.00024538 513.3087328741183 40.79 0.28501 40.487 40.337 40.622 -0.30304 40 13 4 0 0 0 0.0095811 2 21534 21534;21638 81.613 33.267 1 30357000 2737 10362 1852 1889 3119;3120 3119 0.09161138088529697 APRVLQQTL 9 Unmodified _APRVLQQTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3084716796875 2 513.308741 1024.60293 0.6729 0.0003454 -0.19314 -9.9139E-05 0.47976 0.00024627 513.3084346839707 40.461 0.25415 40.466 40.36 40.614 0.0050545 26 11 3 0 0 0 0.013323 1 21588 21588 71.134 31.176 1 6127000 2738 10362 1852 1889 3121 3121 0.09161138088529697 APRVLQQTL 9 Unmodified _APRVLQQTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3094482421875 2 513.308741 1024.60293 0.59892 0.00030743 -0.34097 -0.00017502 0.25795 0.00013241 513.308922328474 45.915 0.46275 40.96 40.713 41.176 -4.9549 68 30 3 0 0 0 0.011968 2 28194 28194;28336 74.929 34.972 1 124840000 2739 10362 1852 1889 3122;3123 3122 0.09161138088529697 APRVLSFSL 9 Unmodified _APRVLSFSL_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2929992675781 2 495.292559 988.570566 0.70392 0.00034864 0.58384 0.00028917 1.2878 0.00063781 495.2928015601995 69.126 0.24315 69.156 69.03 69.273 0.030914 21 11 2 0 0 0 0.044011 1 37994 37994 47.749 9.7747 1 4001000 2740 2782 1853 1890 3124 3124 0.07582350685515848 APRVPVQAL 9 Unmodified _APRVPVQAL_ 0 0 0 nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7930297851562 2 475.792727 949.5709 -0.058583 -2.7873E-05 0.23519 0.0001119 0.17661 8.4028E-05 475.79285029023634 44.762 0.26266 44.446 44.308 44.571 -0.31585 20 14 2 0 0 0 0.070838 1 23874 23874 39.957 1.9833 1 36417000 2741 4410 1854 1891 3125 3125 0.09409770405375184 APRVPVQAL 9 Unmodified _APRVPVQAL_ 0 0 0 nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7937316894531 2 475.792727 949.5709 0.82334 0.00039174 0.4894 0.00023285 1.3127 0.00062459 475.79292142032597 49.892 0.48689 44.353 44.094 44.581 -5.5391 75 30 3 0 0 0 0.0095811 2 31083 31083;31214 81.613 28.402 1 135910000 2742 4410 1854 1891 3126;3127 3126 0.09409770405375184 APRVPVQAL 9 Unmodified _APRVPVQAL_ 0 0 0 nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 475.792727 949.5709 -0.1295 -6.1613E-05 -0.23397 -0.00011132 -0.36347 -0.00017294 475.7924707574233 44.586 0.13717 44.586 44.472 44.61 0 0.12413 -0.00055794 NaN 81.613 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3331600 2743 4410 1854 1891 0.09409770405375184 APRVTSGSTYI 11 Unmodified _APRVTSGSTYI_ 0 0 0 nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR;nc|ENSG00000170820|P23945-2|FSHR nc|ENSG00000170820|P23945-3|FSHR nc|ENSG00000170820|P23945-3|FSHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5405578613281 3 384.540022 1150.59824 1.1641 0.00044764 1.0246 0.00039398 2.1886 0.00084162 384.5407296118862 33.199 0.20776 29.343 29.272 29.48 -3.8562 16 12 2 0 0 0 0.5229 1 19039 19039 8.7518 0 1 12832000 2744 8027 1855 1892 3128 3128 0.028962091551193225 APRWEGRFPL 10 Unmodified _APRWEGRFPL_ 0 0 0 REV__ENST00000581252.5_3_17:73467910-73486787:+|nuORF REV__ENST00000581252.5_3_17:73467910-73486787:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2255859375 3 410.224368 1227.65128 -0.21016 -8.6213E-05 2.8199 0.0011568 2.6098 0.0010706 410.2257114897135 29.667 0.15776 29.697 29.653 29.811 0.030104 13 6 3 0 0 0 0.65502 1 15518 15518 4.1895 0.31317 1 1839200 + 2745 29063 1856 1893 3129 3129 0.04655631728428489 APRWGNPRAL 10 Unmodified _APRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8808288574219 3 379.880713 1136.62031 0.044185 1.6785E-05 -0.661 -0.0002511 -0.61681 -0.00023432 379.8804097262873 33.485 0.7211 33.514 33.231 33.952 0.028934 102 31 5 0 0 0 0.0199 3 17542 17542;17642;17747 64.927 43.127 1 440810000 2746 16067;16068 1857 1894 3130;3131;3132 3130 0.05746478414152989 APRWGNPRAL 10 Unmodified _APRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3174438476562 2 569.317432 1136.62031 0.14166 8.0652E-05 -0.32414 -0.00018454 -0.18248 -0.00010389 569.3172931945544 33.484 0.35796 33.513 33.338 33.696 0.028934 41 15 3 0 0 0 1.0695E-05 2 17666 17562;17666 128.37 95.58 1 22516000 2747 16067;16068 1857 1894 3133;3134 3134 0.05746478414152989 APRWGNPRAL 10 Unmodified _APRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3178100585938 2 569.317432 1136.62031 1.3412 0.00076359 -0.47182 -0.00026862 0.86942 0.00049498 569.3171784618829 37.217 0.59755 32.934 32.632 33.229 -4.2835 106 35 4 0 0 0 8.1743E-11 3 21836 21700;21836;21961 158.2 113.8 1 179750000 2748 16067;16068 1857 1894 3135;3136;3137 3136 0.05746478414152989 APRWLEEEAAL 11 Unmodified _APRWLEEEAAL_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.835205078125 2 642.832777 1283.651 0.12515 8.045E-05 1.2092 0.00077731 1.3343 0.00085776 642.8336074678231 61.134 0.32218 61.134 60.953 61.275 0 26 13 3 0 0 0 0.42115 1 34087 34087 14.957 10.768 1 900300 2749 8764 1858 1895 3138 3138 0.020521672179029338 APRYGTVI 8 Unmodified _APRYGTVI_ 0 0 0 ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL ENSG00000152430|ENST00000392296|BOLL ENSG00000152430|ENST00000392296|BOLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7509155273438 2 438.750527 875.486502 -0.40271 -0.00017669 0.04432 1.9446E-05 -0.35839 -0.00015724 438.75053753327705 34.698 0.32767 34.698 34.518 34.846 0 35 16 3 0 0 0 0.38465 1 18267 18267 46.021 0.32134 1 10489000 2750 6184 1859 1896 3139 3139 0.04377819588614784 APRYLPWH 8 Unmodified _APRYLPWH_ 0 0 0 REV__ENST00000565644.5_1_16:87865506-87865632:-|nuORF REV__ENST00000565644.5_1_16:87865506-87865632:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1041.543823242188 1 1039.54721 1038.53993 0.3485 0.00036228 0.1668 0.0001734 0.5153 0.00053568 1039.5480733153179 88.104 0.24336 87.6 87.482 87.725 -0.50423 21 9 3 0 0 0 0.80975 1 48140 48140 0.79363 0.10326 1 1012500 + 2751 28912 1860 1897 3140 3140 0.022206170911204026 APRYLPWH 8 Unmodified _APRYLPWH_ 0 0 0 REV__ENST00000565644.5_1_16:87865506-87865632:-|nuORF REV__ENST00000565644.5_1_16:87865506-87865632:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1039.54721 1038.53993 0.3485 0.00036228 0.1668 0.0001734 0.5153 0.00053568 1039.5480733153179 88.104 0.24336 87.6 87.482 87.725 -0.50423 0 0 NaN 0.79363 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1012500 + 2752 28912 1860 1897 0.022206170911204026 APSAARELSL 10 Unmodified _APSAARELSL_ 0 0 0 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7821044921875 2 507.782556 1013.55056 -0.17743 -9.0095E-05 -0.47214 -0.00023975 -0.64957 -0.00032984 507.782307049604 41.408 0.18036 41.408 41.261 41.441 0 14 8 2 0 0 0 0.04848 1 22316 22316 59.052 20.877 1 3692300 2753 2537 1861 1898 3141 3141 0.04432554954905754 APSAAVPESCI 11 Unmodified _APSAAVPESCI_ 0 0 0 REV__ENSG00000198546|ENST00000361518|ZNF511 REV__ENSG00000198546|ENST00000361518|ZNF511 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7600708007812 2 522.755149 1043.49575 NaN NaN NaN NaN NaN NaN NaN 54.703 1 54.236 53.736 54.736 -0.46664 0 0 0 0.77961 1 29652 29652 13.042 1.4022 1 + 2754 24023 1862 1899 3142 3142 -0.024261999080408714 APSAFPAVQY 10 Unmodified _APSAFPAVQY_ 0 0 0 nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2;ENST00000573807.5_1_17:7216558-7216813:-|nuORF;ENST00000571697.5_1_17:7216461-7217028:-|nuORF nc|ENSG00000132522|Q13227-2|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7674560546875 2 525.766374 1049.5182 0.2219 0.00011667 1.0143 0.00053331 1.2362 0.00064997 525.7670051881341 59.487 0.19328 58.996 58.855 59.048 -0.49079 14 8 2 0 0 0 0.44373 1 32375 32375 19.257 11.968 1 1180200 2755 4418 1863 1900 3143 3143 -0.004582324480907118 APSAQCFHWL 10 Unmodified _APSAQCFHWL_ 0 0 0 REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF REV__ENST00000565698.5_2_16:28109346-28109856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1829223632812 3 387.183293 1158.52805 0.089547 3.4671E-05 -1.7108 -0.0006624 -1.6213 -0.00062773 387.18269058251707 28.405 0.16164 28.434 28.332 28.494 0.029564 11 6 2 0 0 0 0.70951 1 14812 14812 0.77653 0 1 1214100 + 2756 28914 1864 1901 3144 3144 -0.044873677143641544 APSARACPRLA 11 Carbamidomethyl (C) _APSARAC(Carbamidomethyl (C))PRLA_ APSARAC(1)PRLA APSARAC(45)PRLA 0 1 0 REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2 REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5434265136719 3 390.545113 1168.61351 NaN NaN NaN NaN NaN NaN NaN 25.666 1 25.693 25.193 26.193 0.026951 0 0 0 0.13551 1 13294 13294 44.945 9.865 1 + 2757 19814 1865 1902 3145 3145 1038 0.03594797471282618 APSCEWEWSF 10 Unmodified _APSCEWEWSF_ 0 0 0 REV__ENST00000471989.5_1_17:40475518-40477070:-|nuORF REV__ENST00000471989.5_1_17:40475518-40477070:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.5025634765625 3 414.50258 1240.48591 -0.57356 -0.00023774 -0.63178 -0.00026187 -1.2053 -0.00049961 414.50253800981125 26.186 0.21596 26.186 26.087 26.303 0 30 12 3 0 0 0 0.62068 1 13445 13445 5.7834 0 1 5082000 + 2758 27507 1866 1903 3146 3146 -0.12471387913433318 APSDNRVTSF 10 Unmodified _APSDNRVTSF_ 0 0 0 ENST00000487086.1_1_20:1438843-1447469:-|nuORF;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C ENST00000487086.1_1_20:1438843-1447469:-|nuORF ENST00000487086.1_1_20:1438843-1447469:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.26611328125 2 547.26727 1092.51999 -0.40697 -0.00022272 -0.39156 -0.00021429 -0.79854 -0.00043701 547.2669867500772 29.941 0.24378 29.941 29.793 30.036 0 20 13 2 0 0 0 0.13297 1 15525 15525 41.956 3.9816 1 2474700 2759 1499 1867 1904 3147 3147 -0.022572234301378558 APSDPLAVY 9 Unmodified _APSDPLAVY_ 0 0 0 REV__ENSG00000261308|ENST00000618634|FIGNL2 REV__ENSG00000261308|ENST00000618634|FIGNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7396850585938 2 466.739825 931.465098 -0.0087629 -4.09E-06 -0.29391 -0.00013718 -0.30267 -0.00014127 466.73963535843023 41.538 0.49004 41.538 41.241 41.731 0 54 24 3 0 0 0 0.045537 2 22348 22348;22472 46.921 12.29 1 25199000 + 2760 24584 1868 1905 3148;3149 3148 -0.0033761023076976926 APSDPLAVY 9 Unmodified _APSDPLAVY_ 0 0 0 REV__ENSG00000261308|ENST00000618634|FIGNL2 REV__ENSG00000261308|ENST00000618634|FIGNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7389831542969 2 466.739825 931.465098 0.72322 0.00033756 0.29757 0.00013889 1.0208 0.00047644 466.73954482201566 48.814 0.60777 43.418 43.054 43.661 -5.3961 61 36 2 0 0 0 0.052168 1 30305 30305 44.407 6.2558 1 73534000 + 2761 24584 1868 1905 3150 3150 -0.0033761023076976926 APSDPLAVY 9 Unmodified _APSDPLAVY_ 0 0 0 REV__ENSG00000261308|ENST00000618634|FIGNL2 REV__ENSG00000261308|ENST00000618634|FIGNL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 466.739825 931.465098 -0.0087629 -4.09E-06 -0.29391 -0.00013718 -0.30267 -0.00014127 466.73963535843023 41.538 0.49004 41.538 41.241 41.731 0 0 0 NaN 46.921 54 24 3 NaN NaN NaN NaN 0 NaN NaN 0 25199000 + 2762 24584 1868 1905 -0.0033761023076976926 APSDPQVILY 10 Unmodified _APSDPQVILY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7930908203125 2 551.792589 1101.57063 0.6861 0.00037859 -0.9795 -0.00054048 -0.2934 -0.00016189 551.7918860039538 60.828 0.39964 60.828 60.646 61.045 0 38 16 3 0 0 0 0.40136 1 33911 33911 21.537 3.3906 1 4700900 2763 985 1869 1906 3151 3151 0.02390305894869016 APSDTVLMF 9 Oxidation (M) _APSDTVLM(Oxidation (M))F_ APSDTVLM(1)F APSDTVLM(82)F 0 0 1 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.4696044921875 1 996.47066 995.463383 -0.12424 -0.0001238 1.4903 0.0014851 1.3661 0.0013613 996.4720885451877 65.465 0.49828 65.465 65.219 65.718 0 47 19 3 0 0 0 0.0094915 2 36544 36449;36544 81.864 38.352 1 2415000 2764 10135 1870 1907 3152;3153 3153 1650 -0.034529873110273 APSDTVLMF 9 Oxidation (M) _APSDTVLM(Oxidation (M))F_ APSDTVLM(1)F APSDTVLM(74)F 0 0 1 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7397766113281 2 498.738968 995.463383 0.2469 0.00012314 0.663 0.00033066 0.9099 0.0004538 498.73881365523283 65.474 0.66557 65.474 65.093 65.759 0 93 26 5 0 0 0 0.012158 2 36460 36460;36558 74.396 38.352 1 15596000 2765 10135 1870 1907 3154;3155 3154 1650 -0.034529873110273 APSDTVLMF 9 Oxidation (M) _APSDTVLM(Oxidation (M))F_ APSDTVLM(1)F APSDTVLM(64)F 0 0 1 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7386474609375 2 498.738968 995.463383 -0.064454 -3.2146E-05 -0.36887 -0.00018397 -0.43332 -0.00021611 498.7388383561043 65.96 0.42747 65.476 65.222 65.65 -0.48428 28 18 2 0 0 0 0.019979 1 35987 35987 63.563 31.446 1 3911400 2766 10135 1870 1907 3156 3156 1650 -0.034529873110273 APSDTVLMF 9 Oxidation (M) _APSDTVLM(Oxidation (M))F_ 0 0 1 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 498.738968 995.463383 1.1428 0.00056996 0.10842 5.4074E-05 1.2512 0.00062403 498.73895787351506 72.02 0.26109 65.845 65.637 65.898 -6.1757 0.24661 -9.0509E-05 NaN 74.396 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 44516000 2767 10135 1870 1907 1650 -0.034529873110273 APSDTVLMF 9 Unmodified _APSDTVLMF_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7390441894531 2 490.741511 979.468469 0.36491 0.00017907 -0.2133 -0.00010468 0.1516 7.4397E-05 490.74031701914765 84.493 0.40894 78.317 78.139 78.548 -6.1757 36 23 3 0 0 0 0.038285 1 55601 55601 50.855 26.181 1 15269000 2768 10135 1870 1908 3157 3157 -0.022086834484184692 APSEASPPSYI 11 Unmodified _APSEASPPSYI_ 0 0 0 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 ENSG00000198908|ENST00000457056|GPRASP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2734985351562 2 559.771854 1117.52915 0.38351 0.00021468 -0.082125 -4.5972E-05 0.30138 0.00016871 560.2733684713604 58.683 0.20773 58.683 58.56 58.768 0 14 8 2 0 0 0 0.6249 1 32706 32706 10.074 0 1 867210 2769 10192 1871 1909 3158 3158 -0.024908748644747902 APSEYRYTLL 10 Unmodified _APSEYRYTLL_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8167724609375 2 606.816596 1211.61864 0.28206 0.00017116 0.60529 0.0003673 0.88735 0.00053846 606.8168153317065 55.154 0.31085 54.676 54.509 54.82 -0.47798 35 14 3 0 0 0 0.52097 1 29978 29978 15.248 7.093 1 5895300 2770 540 1872 1910 3159 3159 0.02129379814891763 APSEYRYTLL 10 Unmodified _APSEYRYTLL_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MSMS AL20221201_MKP_PDAC_01 4 606.817138671875 2 606.816596 1211.61864 NaN NaN NaN NaN NaN NaN NaN 60.376 1 54.261 53.761 54.761 -6.1147 0 0 0 0.017197 1 38847 38847 75.571 35.331 1 2771 540 1872 1910 3160 3160 0.02129379814891763 APSGDTLNWL 10 Unmodified _APSGDTLNWL_ 0 0 0 REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A REV__nc|ENSG00000203995|Q6WRX3-2|ZYG11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7727661132812 2 537.266739 1072.51892 0.24746 0.00013295 0.54997 0.00029548 0.79743 0.00042843 537.2667487483782 37.298 0.82729 37.298 36.818 37.645 0 134 42 6 0 0 0 0.60623 1 19712 19712 10.824 2.2306 1 40382000 + 2772 24132 1873 1911 3161 3161 -0.014434377990482972 APSGLRSQVQF 11 Unmodified _APSGLRSQVQF_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3209838867188 2 595.319837 1188.62512 0.12307 7.3268E-05 1.8105 0.0010778 1.9336 0.0011511 595.3211746883707 42.37 0.19717 42.361 42.247 42.444 -0.0088196 14 8 2 0 0 0 2.1714E-06 1 22680 22680 109.15 61.552 1 5680800 2773 6382 1874 1912 3162 3162 0.03835317766265689 APSGLRSQVQF 11 Unmodified _APSGLRSQVQF_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.7718505859375 2 595.319837 1188.62512 1.2497 0.00074398 2.6502 0.0015777 3.9 0.0023217 595.3217853486263 47.644 0.45084 42.41 42.165 42.616 -5.2339 53 26 3 0 0 0 0.28666 1 29616 29616 10.8 1.4164 1 16962000 2774 6382 1874 1912 3163 3163 0.03835317766265689 APSGLRSQVQF 11 Unmodified _APSGLRSQVQF_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.319837 1188.62512 0.18556 0.00011047 0.88468 0.00052666 1.0702 0.00063713 595.3203340723167 42.655 0.13758 42.349 42.296 42.434 -0.30682 -0.024861 -0.0010089 NaN 109.15 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4328100 2775 6382 1874 1912 0.03835317766265689 APSHLMALLTL 11 Oxidation (M) _APSHLM(Oxidation (M))ALLTL_ APSHLM(1)ALLTL APSHLM(44)ALLTL 0 0 1 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.83203125 2 591.831191 1181.64783 -0.032393 -1.9171E-05 1.2546 0.00074248 1.2222 0.00072331 591.8321966584233 72.685 0.38342 72.726 72.399 72.782 0.041725 32 17 3 0 0 0 0.088819 1 40021 40021 43.772 7.6454 1 5061100 2776 4361 1875 1913 3164 3164 790 0.06427200839539182 APSHLMALLTL 11 Unmodified _APSHLMALLTL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.834228515625 2 583.833734 1165.65292 0.48126 0.00028098 0.8847 0.00051652 1.366 0.0007975 583.8344782339334 99.626 0.15937 93.45 93.365 93.525 -6.1757 17 9 2 0 0 0 0.063019 1 66438 66438 69.105 23.405 1 53313000 2777 4361 1875 1914 3165 3165 0.0767150470217075 APSIHIWDA 9 Unmodified _APSIHIWDA_ 0 0 0 ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF ENSG00000165521|ENST00000554922|EML5 ENSG00000165521|ENST00000554922|EML5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.25732421875 2 505.258717 1008.50288 1.178 0.00059518 -2.0042 -0.0010126 -0.8262 -0.00041744 505.25749387960576 54.438 0.42418 54.438 54.291 54.715 0 41 18 3 0 0 0 0.2143 1 30239 30239 21.747 1.293 1 1872200 2778 7354 1876 1915 3166 3166 -0.0010309924529110503 APSIPTPAY 9 Unmodified _APSIPTPAY_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS AL20221201_MKP_PDAC_01 4 458.7424011230469 2 458.742368 915.470183 NaN NaN NaN NaN NaN NaN NaN 59.323 1 53.248 52.748 53.748 -6.0745 0 0 0 0.017457 1 38079 38079 81.864 39.769 1 2779 7963 1877 1916 3167 3167 0.009066936318390617 APSISGSSURS 11 Unmodified _APSISGSSURS_ 0 0 0 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.21728515625 2 550.217706 1098.42086 NaN NaN NaN NaN NaN NaN NaN 11 1 11 10.5 11.5 0 0 0 0 0.9435 1 5217 5217 0 0 0 2780 16518 1878 1917 3168 3168 -0.12441489949969764 APSISGSSURS 11 Unmodified _APSISGSSURS_ 0 0 0 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2166748046875 2 550.217706 1098.42086 NaN NaN NaN NaN NaN NaN NaN 11.566 1 11.566 11.066 12.066 0 0 0 0 0.9435 1 5484 5484 0 0 0 2781 16518 1878 1917 3169 3169 -0.12441489949969764 APSISGSSURS 11 Unmodified _APSISGSSURS_ 0 0 0 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2178955078125 2 550.217706 1098.42086 NaN NaN NaN NaN NaN NaN NaN 93.823 1 93.823 93.323 94.323 0 0 0 0 0.9435 1 51868 51868 0 0 0 2782 16518 1878 1917 3170 3170 -0.12441489949969764 APSISGSSURS 11 Unmodified _APSISGSSURS_ 0 0 0 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2175903320312 2 550.217706 1098.42086 NaN NaN NaN NaN NaN NaN NaN 7.3692 1 7.2776 6.7776 7.7776 -0.09156 0 0 0 0.9435 1 3623 3623 0 0 0 2783 16518 1878 1917 3171 3171 -0.12441489949969764 APSISGSSURS 11 Unmodified _APSISGSSURS_ 0 0 0 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 nc|ENSG00000211452|P49895-6|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2169189453125 2 550.217706 1098.42086 NaN NaN NaN NaN NaN NaN NaN 10.872 1 10.888 10.388 11.388 0.015327 0 0 0 0.9435 1 5367 5367 0 0 0 2784 16518 1878 1917 3172 3172 -0.12441489949969764 APSKPAASI 9 Unmodified _APSKPAASI_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2425842285156 2 421.242535 840.470518 NaN NaN NaN NaN NaN NaN NaN 21.72 1 21.72 21.22 22.22 0 0 0 0 0.50124 1 11011 11011 15.847 1.2655 1 2785 6242 1879 1918 3173 3173 0.04390113351701075 APSKPAASI 9 Unmodified _APSKPAASI_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2431640625 2 421.242535 840.470518 0.56702 0.00023885 0.021741 9.1581E-06 0.58877 0.00024801 421.24231420745735 24.397 0.28314 21.57 21.41 21.693 -2.8273 20 15 2 0 0 0 0.053952 1 13277 13277 43.982 2.1422 1 2533700 2786 6242 1879 1918 3174 3174 0.04390113351701075 APSKPWDSHF 10 Unmodified _APSKPWDSHF_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2789306640625 2 586.28018 1170.54581 NaN NaN NaN NaN NaN NaN NaN 75.089 1 74.612 74.112 75.112 -0.47714 0 0 0 0.96627 1 41099 41099 4.3292 0 1 + 2787 23122 1880 1919 3175 3175 -0.03264329187868498 APSKSRLLATL 11 Unmodified _APSKSRLLATL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2400817871094 3 386.239796 1155.69756 0.10472 4.0448E-05 -0.36985 -0.00014285 -0.26512 -0.0001024 386.2397482146315 41.068 0.44759 41.066 40.871 41.319 -0.0017929 52 21 4 0 0 0 0.48742 1 21882 21882 17.049 2.2107 1 13601000 2788 10579 1881 1920 3176 3176 0.1259365183987029 APSKSRLLATL 11 Unmodified _APSKSRLLATL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.85595703125 2 578.856055 1155.69756 0.49167 0.0002846 0.45405 0.00026283 0.94571 0.00054743 578.8563348448354 41.087 0.24934 41.086 40.931 41.18 -0.0017929 18 11 2 0 0 0 0.041516 1 21936 21936 48.073 32.824 1 1823700 2789 10579 1881 1920 3177 3177 0.1259365183987029 APSKSRLLATL 11 Unmodified _APSKSRLLATL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2389831542969 3 386.239796 1155.69756 0.87587 0.0003383 0.26875 0.0001038 1.1446 0.0004421 386.2399478356104 45.026 0.44829 40.174 39.975 40.423 -4.852 69 29 3 0 0 0 0.42951 1 27496 27496 19.987 5.7687 1 27594000 2790 10579 1881 1920 3178 3178 0.1259365183987029 APSKSRLLATL 11 Unmodified _APSKSRLLATL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS AL20221201_MKP_PDAC_01 4 578.8562622070312 2 578.856055 1155.69756 NaN NaN NaN NaN NaN NaN NaN 45.016 1 40.164 39.664 40.664 -4.852 0 0 0 0.058341 1 27559 27559 70.496 26.637 1 2791 10579 1881 1920 3179 3179 0.1259365183987029 APSKSRLLATL 11 Unmodified _APSKSRLLATL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 386.239796 1155.69756 0.10472 4.0448E-05 -0.36985 -0.00014285 -0.26512 -0.0001024 386.2397482146315 41.068 0.44759 41.066 40.871 41.319 -0.0017929 0 0 NaN 17.049 52 21 4 NaN NaN NaN NaN 0 NaN NaN 0 13601000 2792 10579 1881 1920 0.1259365183987029 APSKTSLIM 9 Oxidation (M) _APSKTSLIM(Oxidation (M))_ APSKTSLIM(1) APSKTSLIM(58) 0 0 1 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2629089355469 2 482.26261 962.510668 -0.37548 -0.00018108 1.0004 0.00048245 0.62491 0.00030137 482.26298443227984 26.78 0.38072 26.78 26.571 26.952 0 39 17 3 0 0 0 0.025842 2 13822 13724;13822 57.722 23.32 1 11595000 2793 16620 1882 1921 3180;3181 3181 1824 0.027912919599771158 APSKTSLIM 9 Oxidation (M) _APSKTSLIM(Oxidation (M))_ APSKTSLIM(1) APSKTSLIM(59) 0 0 1 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.263427734375 2 482.26261 962.510668 NaN NaN NaN NaN NaN NaN NaN 26.749 1 26.718 26.218 27.218 -0.031708 0 0 0 0.046065 1 13762 13762 59.368 23.241 1 2794 16620 1882 1921 3182 3182 1824 0.027912919599771158 APSKTSLIM 9 Oxidation (M) _APSKTSLIM(Oxidation (M))_ APSKTSLIM(1) APSKTSLIM(90) 0 0 1 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2626647949219 2 482.26261 962.510668 0.65942 0.00031801 -0.30869 -0.00014887 0.35073 0.00016915 482.26235050685887 30.041 0.42846 26.544 26.328 26.757 -3.497 45 20 3 0 0 0 0.0085366 2 16971 16850;16971 100.09 47.822 1 85983000 2795 16620 1882 1921 3183;3184 3184 1824 0.027912919599771158 APSKTSLIM 9 Unmodified _APSKTSLIM_ 0 0 0 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2664794921875 2 474.265153 946.515753 0.82612 0.0003918 -0.22201 -0.00010529 0.60411 0.00028651 474.26504897586136 42.913 0.5449 38.228 37.969 38.514 -4.6846 68 35 2 0 0 0 0.033587 3 25858 25858;26031;26175 53.404 22.767 1 142500000 2796 16620 1882 1922 3185;3186;3187 3185 0.04035595822585947 APSKTSLIM 9 Unmodified _APSKTSLIM_ 0 0 0 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 474.265153 946.515753 0.10846 5.144E-05 -0.040398 -1.916E-05 0.068065 3.2281E-05 474.2653596895165 38.77 0.19263 38.483 38.415 38.608 -0.28687 0.12753 0.00013149 NaN 53.404 26 8 5 NaN NaN NaN NaN 0 NaN NaN 0 2270800 2797 16620 1882 1922 0.04035595822585947 APSKVFLSI 9 Unmodified _APSKVFLSI_ 0 0 0 ENST00000508165.1_1_4:135248307-135248892:+|nuORF ENST00000508165.1_1_4:135248307-135248892:+|nuORF ENST00000508165.1_1_4:135248307-135248892:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2894287109375 2 481.289485 960.564418 0.67227 0.00032355 -0.55309 -0.0002662 0.11918 5.7358E-05 481.2891656331814 58.523 0.29148 58.462 58.333 58.624 -0.060719 31 14 3 0 0 0 0.028475 1 31860 31860 56.177 4.5472 1 4578800 2798 14553 1883 1923 3188 3188 0.08255832453994572 APSKVFLSI 9 Unmodified _APSKVFLSI_ 0 0 0 ENST00000508165.1_1_4:135248307-135248892:+|nuORF ENST00000508165.1_1_4:135248307-135248892:+|nuORF ENST00000508165.1_1_4:135248307-135248892:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2900085449219 2 481.289485 960.564418 1.5369 0.00073971 -0.518 -0.00024931 1.0189 0.00049041 481.2893399179585 64.183 0.35074 58.008 57.782 58.132 -6.1757 31 17 2 0 0 0 0.044011 1 41557 41557 47.749 11.704 1 10785000 2799 14553 1883 1923 3189 3189 0.08255832453994572 APSKVGEKVED 11 Unmodified _APSKVGEKVED_ 0 0 0 ENST00000463528.5_1_22:31518982-31519977:+|nuORF ENST00000463528.5_1_22:31518982-31519977:+|nuORF ENST00000463528.5_1_22:31518982-31519977:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.8714599609375 3 386.871549 1157.59282 NaN NaN NaN NaN NaN NaN NaN 22.855 1 20.076 19.576 20.576 -2.7784 0 0 0 0.77961 1 12322 12322 7.0371 0 1 2800 13697 1884 1924 3190 3190 0.020324855726357782 APSLFHLNTL 10 Unmodified _APSLFHLNTL_ 0 0 0 nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1 nc|ENSG00000164741|Q96QB1-4|DLC1 nc|ENSG00000164741|Q96QB1-4|DLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8052368164062 2 556.808574 1111.60259 0.29633 0.000165 0.79382 0.00044201 1.0902 0.00060701 556.809201829034 72.517 0.34131 72.558 72.399 72.74 0.041725 42 15 4 0 0 0 0.0062542 1 39890 39890 117.84 56.48 1 13001000 2801 7236 1885 1925 3191 3191 0.051257183686630015 APSLKNAAF 9 Unmodified _APSLKNAAF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MSMS AL20221201_MKP_PDAC_01 4 459.7549133300781 2 459.75581 917.497067 NaN NaN NaN NaN NaN NaN NaN 43.363 1 38.598 38.098 39.098 -4.7648 0 0 0 0.068038 1 26330 26330 51.63 15.503 1 2802 3219 1886 1926 3192 3192 0.03501802243022212 APSLKQFSL 9 Unmodified _APSLKQFSL_ 0 0 0 nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4 nc|ENSG00000137822|Q9UGJ1|TUBGCP4 nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7855834960938 2 495.784567 989.554582 0.97037 0.00048109 0.51512 0.00025539 1.4855 0.00073648 495.78448185871594 57.864 0.25505 57.798 57.655 57.91 -0.066036 29 12 3 0 0 0 0.018061 1 31483 31483 65.474 32.688 1 3711400 2803 4976 1887 1927 3193 3193 0.059386444485994616 APSLLGGAVPG 11 Unmodified _APSLLGGAVPG_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7690124511719 2 469.768917 937.523281 0.32492 0.00015264 -0.53271 -0.00025025 -0.20779 -9.7615E-05 469.7686965428743 59.695 0.22408 59.204 59.069 59.293 -0.49079 19 10 2 0 0 0 0.072482 1 32444 32444 46.021 2.1627 1 2189000 + 2804 20303 1888 1928 3194 3194 0.052020714145328384 APSLLGGAVPG 11 Unmodified _APSLLGGAVPG_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 469.768917 937.523281 0.32492 0.00015264 -0.53271 -0.00025025 -0.20779 -9.7615E-05 469.7686965428743 59.695 0.22408 59.204 59.069 59.293 -0.49079 0 0 NaN 46.021 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2189000 + 2805 20303 1888 1928 0.052020714145328384 APSLNLSSCL 10 Unmodified _APSLNLSSCL_ 0 0 0 REV__nc|ENSG00000173011|Q86TJ2-3|TADA2B REV__nc|ENSG00000173011|Q86TJ2-3|TADA2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7570495605469 2 502.757692 1003.50083 1.1853 0.00059594 2.6401 0.0013273 3.8254 0.0019233 503.2620124322125 89.803 0.2129 83.628 83.508 83.721 -6.1757 16 11 2 0 0 0 0.33553 1 59343 59343 25.399 2.663 1 6309400 + 2806 22697 1889 1929 3195 3195 -0.0007789604542267625 APSLPTKNF 9 Unmodified _APSLPTKNF_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE;nc|ENSG00000106012|Q6IPM2-3|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7472229003906 2 487.768917 973.523281 0.94631 0.00046158 -0.82986 -0.00040478 0.11645 5.6802E-05 487.768755608705 42.661 0.1348 42.661 42.565 42.7 0 10 6 2 0 0 0 0.16785 1 23056 23056 23.148 6.2061 1 1713600 2807 2391 1890 1930 3196 3196 0.03546071414518792 APSLRHSVQQF 11 Unmodified _APSLRHSVQQF_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8949584960938 3 423.894799 1268.66257 -0.044216 -1.8743E-05 1.0432 0.00044222 0.999 0.00042347 423.8950467751592 30.098 0.18603 30.128 30.021 30.207 0.030106 19 7 3 0 0 0 0.50268 1 15732 15732 16.275 5.9593 1 2737400 2808 8091 1891 1931 3197 3197 0.038984090318763265 APSLRHSVQQF 11 Unmodified _APSLRHSVQQF_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7;nc|ENSG00000171316|Q9P2D1-4|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8955688476562 3 423.894799 1268.66257 1.0115 0.00042878 -0.5616 -0.00023806 0.44994 0.00019073 424.22869566607034 34.369 0.24216 30.273 30.196 30.438 -4.0951 19 13 2 0 0 0 0.47711 1 19843 19843 17.572 8.8201 1 8000800 2809 8091 1891 1931 3198 3198 0.038984090318763265 APSLRPPRL 9 Unmodified _APSLRPPRL_ 0 0 0 REV__ENST00000269142.9_1_18:23806727-23806883:+|nuORF REV__ENST00000269142.9_1_18:23806727-23806883:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8116760253906 2 503.811451 1005.60835 0.60712 0.00030587 0.60813 0.00030638 1.2153 0.00061226 503.8115812659919 43.883 0.4476 39.118 38.888 39.336 -4.7648 52 28 2 0 0 0 0.024882 1 26829 26829 58.679 6.4105 1 21394000 + 2810 25120 1892 1932 3199 3199 0.10576861670972448 APSLSVYGL 9 Unmodified _APSLSVYGL_ 0 0 0 REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21 REV__nc|ENSG00000183032|Q9BQT8-2|SLC25A21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4923706054688 1 906.49311 905.485833 0.099985 9.0636E-05 0.64273 0.00058263 0.74272 0.00067327 906.4944123727521 62.083 0.17091 61.595 61.489 61.66 -0.48764 12 7 2 0 0 0 0.2001 1 33788 33788 23.148 5.0134 1 1681000 + 2811 23311 1893 1933 3200 3200 0.029309801489034726 APSLVAPAL 9 Unmodified _APSLVAPAL_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.7556457519531 2 419.755278 837.496004 NaN NaN NaN NaN NaN NaN NaN 66.121 1 65.638 65.138 66.138 -0.48323 0 0 0 0.017457 1 36096 36096 81.864 18.301 1 2812 1957 1894 1934 3201 3201 0.07075587874123812 APSMIYDSLPF 11 Unmodified _APSMIYDSLPF_ 0 0 0 ENST00000489839.1_1_6:29576272-29578708:-|nuORF ENST00000489839.1_1_6:29576272-29578708:-|nuORF ENST00000489839.1_1_6:29576272-29578708:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3007202148438 2 620.799557 1239.58456 0.15055 9.3461E-05 -0.09218 -5.7226E-05 0.058368 3.6235E-05 620.7995172117733 66.277 0.40379 65.793 65.686 66.09 -0.48323 27 21 2 0 0 0 0.6249 1 36156 36156 10.074 0 1 3662900 2813 14247 1895 1935 3202 3202 -0.02564784668379616 APSMVHSSL 9 Oxidation (M) _APSM(Oxidation (M))VHSSL_ APSM(1)VHSSL APSM(55)VHSSL 0 0 1 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MSMS AL20221201_MKP_PDAC_01 4 472.7286987304688 2 472.728935 943.443317 NaN NaN NaN NaN NaN NaN NaN 23.64 1 20.812 20.312 21.312 -2.8273 0 0 0 0.056448 1 12805 12805 54.774 20.671 1 2814 7282 1896 1936 3203 3203 1261 -0.030667382509591334 APSNPTLYF 9 Unmodified _APSNPTLYF_ 0 0 0 REV__ENST00000472551.1_1_22:44592009-44614388:+|nuORF REV__ENST00000472551.1_1_22:44592009-44614388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.252685546875 2 505.2531 1008.49165 0.27713 0.00014002 -0.55519 -0.00028051 -0.27806 -0.00014049 505.2526948538257 73.762 0.35106 73.286 73.118 73.469 -0.47588 34 16 3 0 0 0 0.37804 1 40437 40437 13.508 1.8676 1 4861300 + 2815 20381 1897 1937 3204 3204 -0.01225921339425895 APSPGKKL 8 Unmodified _APSPGKKL_ 0 0 0 ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000187627|ENST00000641458|RGPD1 ENSG00000187627|ENST00000641458|RGPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.248291015625 2 399.247621 796.480688 1.0333 0.00041252 0.22898 9.1418E-05 1.2622 0.00050394 399.24765863505564 72.429 0.41891 66.253 66.085 66.504 -6.1757 35 21 2 0 0 0 0.67481 2 47476 47343;47476 19.439 4.8573 1 17854000 2816 9359 1898 1938 3205;3206 3206 0.07430721076946156 APSPPLRAL 9 Unmodified _APSPPLRAL_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS AL20221201_MKP_PDAC_01 4 461.280029296875 2 461.279452 920.544351 NaN NaN NaN NaN NaN NaN NaN 50.209 1 44.669 44.169 45.169 -5.5391 0 0 0 0.059498 1 31467 31467 53.833 7.8118 1 2817 4712 1899 1939 3207 3207 0.08090081514046688 APSPPRLRL 9 Unmodified _APSPPRLRL_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8120422363281 2 503.811451 1005.60835 0.60712 0.00030587 0.60813 0.00030638 1.2153 0.00061226 503.8115812659919 43.883 0.4476 39.118 38.888 39.336 -4.7648 52 28 2 0 0 0 0.05447 1 26693 26693 43.858 0 1 21394000 2818 457 1900 1940 3208 3208 0.10576861670972448 APSPRPLSL 9 Unmodified _APSPRPLSL_ 0 0 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2765197753906 2 469.276909 936.539266 0.17693 8.303E-05 -0.25766 -0.00012092 -0.080732 -3.7886E-05 469.2767602885585 43.183 0.2869 42.873 42.72 43.007 -0.31039 35 13 3 0 0 0 0.0061223 2 22925 22925;23028 114.2 21.548 1 51064000 2819 6784 1901 1941 3209;3210 3209 0.06845777651415119 APSPRPLSL 9 Unmodified _APSPRPLSL_ 0 0 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.27685546875 2 469.276909 936.539266 0.54173 0.00025422 -0.14061 -6.5986E-05 0.40112 0.00018824 469.27681807453365 42.851 0.25974 42.842 42.705 42.965 -0.0088196 20 11 2 0 0 0 0.018061 1 22933 22933 65.474 9.9709 1 8077000 2820 6784 1901 1941 3211 3211 0.06845777651415119 APSPRPLSL 9 Unmodified _APSPRPLSL_ 0 0 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2776489257812 2 469.276909 936.539266 1.5268 0.00071649 -0.15296 -7.1782E-05 1.3738 0.00064471 469.2768347229332 47.595 0.56902 42.361 42.072 42.641 -5.2339 88 33 3 0 0 0 0.0081887 3 29456 29456;29594;29755 93.166 10.637 1 134330000 2821 6784 1901 1941 3212;3213;3214 3212 0.06845777651415119 APSPSFAIY 9 Unmodified _APSPSFAIY_ 0 0 0 REV__ENST00000396425.7_1_22:42391277-42391559:+|nuORF REV__ENST00000396425.7_1_22:42391277-42391559:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7416076660156 2 476.742368 951.470183 -0.45416 -0.00021652 -0.70111 -0.00033425 -1.1553 -0.00055076 476.7420584576093 48.722 0.32117 48.722 48.531 48.852 0 32 14 3 0 0 0 0.06187 1 26750 26750 42.095 0 1 7561100 + 2822 26505 1902 1942 3215 3215 -0.007493063681408785 APSPSGAEGAF 11 Unmodified _APSPSGAEGAF_ 0 0 0 ENST00000498126.5_1_1:224622786-224703543:+|nuORF ENST00000498126.5_1_1:224622786-224703543:+|nuORF ENST00000498126.5_1_1:224622786-224703543:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7307434082031 2 495.729989 989.445425 1.148 0.0005691 0.36416 0.00018052 1.5122 0.00074962 495.73018938188204 81.284 0.46864 75.108 74.892 75.361 -6.1757 47 26 2 0 0 0 0.15484 1 53412 53412 36.127 0.082828 1 26296000 2823 14414 1903 1943 3216 3216 -0.049719862415145144 APSPTALKL 9 Unmodified _APSPTALKL_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2742004394531 2 449.273835 896.533118 0.51517 0.00023145 -0.034322 -1.542E-05 0.48085 0.00021603 449.2737656514318 46.623 0.17455 46.286 46.21 46.385 -0.33665 13 8 2 0 0 0 0.040683 1 24951 24951 49.554 7.5987 1 2465000 2824 4772 1904 1944 3217 3217 0.08071259419898524 APSPTALKL 9 Unmodified _APSPTALKL_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 449.273835 896.533118 0.78829 0.00035416 0.58911 0.00026467 1.3774 0.00061883 449.274257432858 46.458 0.13209 46.458 46.412 46.544 0 0.086066 0.00031134 NaN 49.554 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 723020 2825 4772 1904 1944 0.08071259419898524 APSQILSVESY 11 Unmodified _APSQILSVESY_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3052368164062 2 597.306061 1192.59757 0.18431 0.00011009 -1.3222 -0.00078975 -1.1379 -0.00067966 597.3051197963307 59.342 0.20273 59.342 59.262 59.465 0 13 8 2 0 0 0 0.53952 1 33082 33082 14.405 7.6822 1 1729100 2826 9821 1905 1945 3218 3218 0.008973697154033289 APSQQPKERR 10 Unmodified _APSQQPKERR_ 0 0 0 REV__nc|ENSG00000178053|P58340-3|MLF1 REV__nc|ENSG00000178053|P58340-3|MLF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5548400878906 3 399.554666 1195.64217 -0.48661 -0.00019443 -0.18825 -7.5216E-05 -0.67486 -0.00026964 399.55450952340385 20.355 0.18412 20.355 20.241 20.425 0 37 23 4 0 0 0 0.54684 1 10217 10217 8.4443 0 1 2078300 + 2827 29810 1906 1946 3219 3219 0.05217238372074462 APSQQRLVVV 10 Unmodified _APSQQRLVVV_ 0 0 0 nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.82666015625 2 548.827298 1095.64004 -0.04052 -2.2239E-05 0.11878 6.5192E-05 0.078264 4.2953E-05 548.8273834280915 41.316 0.24555 41.013 40.887 41.132 -0.30304 27 11 3 0 0 0 0.010306 1 21863 21863 100.09 54.391 1 7734100 2828 2116 1907 1947 3220 3220 0.09604809634265621 APSQQRLVVV 10 Unmodified _APSQQRLVVV_ 0 0 0 nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8272705078125 2 548.827298 1095.64004 0.72384 0.00039726 0.81933 0.00044967 1.5432 0.00084694 548.8269635699012 45.778 0.41652 40.823 40.582 40.999 -4.9549 63 27 4 0 0 0 0.1711 1 28150 28150 42.312 21.441 1 26039000 2829 2116 1907 1947 3221 3221 0.09604809634265621 APSRNGMVL 9 Oxidation (M) _APSRNGM(Oxidation (M))VL_ APSRNGM(1)VL APSRNGM(48)VL 0 0 1 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7505798339844 2 480.750201 959.48585 -0.1432 -6.8844E-05 0.33614 0.0001616 0.19294 9.2757E-05 480.7505129688 22.622 0.45568 22.622 22.465 22.921 0 79 23 5 0 0 0 0.044296 1 11477 11477 47.594 13.407 1 41816000 2830 7624 1908 1948 3222 3222 1303 0.00448656877256326 APSRNGMVL 9 Oxidation (M) _APSRNGM(Oxidation (M))VL_ APSRNGM(1)VL APSRNGM(46)VL 0 0 1 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7502746582031 2 480.750201 959.48585 -0.028921 -1.3904E-05 -0.30935 -0.00014872 -0.33827 -0.00016262 480.7502152994729 22.314 0.34692 22.337 22.121 22.467 0.022894 47 15 4 0 0 0 0.047714 1 11377 11377 45.74 11.553 1 9691500 2831 7624 1908 1948 3223 3223 1303 0.00448656877256326 APSRNGMVL 9 Oxidation (M) _APSRNGM(Oxidation (M))VL_ APSRNGM(1)VL APSRNGM(46)VL 0 0 1 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7500610351562 2 480.750201 959.48585 0.0064748 3.1127E-06 -0.44809 -0.00021542 -0.44162 -0.00021231 480.7500923178132 22.572 0.35215 22.595 22.442 22.794 0.022896 37 14 3 0 0 0 0.047714 1 11474 11474 45.74 11.553 1 11211000 2832 7624 1908 1948 3224 3224 1303 0.00448656877256326 APSRNGMVL 9 Oxidation (M) _APSRNGM(Oxidation (M))VL_ APSRNGM(1)VL APSRNGM(62)VL 0 0 1 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7508544921875 2 480.750201 959.48585 0.30653 0.00014737 -0.31541 -0.00015163 -0.008878 -4.2681E-06 480.7500881871732 24.702 0.50356 21.819 21.49 21.993 -2.8831 107 28 5 0 0 0 0.021948 2 13329 13329;13437 61.602 18.634 1 249340000 2833 7624 1908 1948 3225;3226 3225 1303 0.00448656877256326 APSRNGMVL 9 Oxidation (M) _APSRNGM(Oxidation (M))VL_ APSRNGM(1)VL APSRNGM(42)VL 0 0 1 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.75 2 480.750201 959.48585 0.16521 7.9424E-05 -0.5912 -0.00028422 -0.42599 -0.00020479 480.7500382635996 25.039 0.76736 22.156 21.945 22.712 -2.8831 182 59 4 0 0 0 0.062454 1 13655 13655 41.956 26.108 1 289540000 2834 7624 1908 1948 3227 3227 1303 0.00448656877256326 APSRNGMVL 9 Unmodified _APSRNGMVL_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7528076171875 2 472.752744 943.490935 -0.17428 -8.2389E-05 0.861 0.00040704 0.68673 0.00032465 472.7531709738237 33.648 0.29877 33.488 33.323 33.622 -0.15918 23 12 2 0 0 0 0.13231 2 17514 17514;17611 29.841 10.402 1 3722200 2835 7624 1908 1949 3228;3229 3228 0.016929607398765256 APSRNGMVL 9 Unmodified _APSRNGMVL_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7530212402344 2 472.752744 943.490935 1.0066 0.00047587 -0.76422 -0.00036129 0.24237 0.00011458 472.7525461303878 36.952 0.69851 32.668 32.324 33.023 -4.2835 158 42 5 0 0 0 0.0090524 4 21423 21423;21545;21672;21814 85.642 41.234 1 619240000 2836 7624 1908 1949 3230;3231;3232;3233 3230 0.016929607398765256 APSRRTSGLL 10 Unmodified _APSRRTSGLL_ 0 0 0 REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2088623046875 3 353.208607 1056.60399 0.95603 0.00033768 -0.18357 -6.4838E-05 0.77246 0.00027284 353.2085525922415 24.299 0.47818 21.472 21.231 21.709 -2.8273 78 26 4 0 0 0 0.20962 1 13258 13258 28.234 0 1 84839000 + 2837 27991 1909 1950 3234 3234 0.07795352457424087 APSRRTSGLL 10 Unmodified _APSRRTSGLL_ 0 0 0 REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF REV__ENST00000498157.1_1_1:109816296-109816506:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 353.208607 1056.60399 0.95603 0.00033768 -0.18357 -6.4838E-05 0.77246 0.00027284 353.2085525922415 24.299 0.47818 21.472 21.231 21.709 -2.8273 -0.058308 -5.2264E-05 NaN 28.234 78 26 4 NaN NaN NaN NaN 0 NaN NaN 0 84839000 + 2838 27991 1909 1950 0.07795352457424087 APSRVSVLL 9 Unmodified _APSRVSVLL_ 0 0 0 REV__ENST00000305943.7_2_1:228675067-228675130:+|nuORF REV__ENST00000305943.7_2_1:228675067-228675130:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2930297851562 2 471.292559 940.570566 0.99595 0.00046938 0.031399 1.4798E-05 1.0273 0.00048418 471.2923425069011 50.655 0.42808 45.006 44.804 45.232 -5.649 51 26 3 0 0 0 0.08691 1 31832 31832 36.127 9.8589 1 53079000 + 2839 25370 1910 1951 3235 3235 0.09790350685523208 APSSFQLLY 9 Unmodified _APSSFQLLY_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2708129882812 2 513.26875 1024.52295 0.642 0.00032952 -1.2716 -0.00065266 -0.62958 -0.00032314 513.2687417755453 75.171 0.36821 74.693 74.538 74.906 -0.47714 34 16 3 0 0 0 0.06187 1 41122 41122 42.095 7.9921 1 3190000 2840 1866 1911 1952 3236 3236 0.011666516946661432 APSSPRPALP 10 Unmodified _APSSPRPALP_ 0 0 0 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7799072265625 2 496.779816 991.545079 -0.30358 -0.00015081 1.7271 0.00085799 1.4235 0.00070718 496.7802381080807 34.919 0.38332 34.727 34.606 34.989 -0.19131 27 16 2 0 0 0 0.095172 2 18254 18254;18354 47.732 17.891 1 2221500 2841 1554 1912 1953 3237;3238 3237 0.04896876163093111 APSTIIFHL 9 Unmodified _APSTIIFHL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7864990234375 2 499.78711 997.559667 0.50035 0.00025007 -0.073854 -3.6911E-05 0.4265 0.00021316 499.78709649790835 73.308 0.36745 72.832 72.606 72.974 -0.47588 29 16 2 0 0 0 0.068777 1 40084 40084 40.449 27.406 1 1883000 2842 3388 1913 1954 3239 3239 0.06078948311221666 APSTIIFHL 9 Unmodified _APSTIIFHL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7876586914062 2 499.78711 997.559667 0.13146 6.5704E-05 -0.23589 -0.0001179 -0.10443 -5.2191E-05 499.7871549792529 72.774 0.32709 72.816 72.617 72.944 0.041725 39 15 3 0 0 0 0.012158 2 40034 40034;40137 74.396 42.091 1 10192000 2843 3388 1913 1954 3240;3241 3240 0.06078948311221666 APSTSLCL 8 Unmodified _APSTSLCL_ 0 0 0 REV__ENST00000381913.8_3_17:3427502-3432197:-|nuORF REV__ENST00000381913.8_3_17:3427502-3432197:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.1885681152344 2 396.202021 790.38949 NaN NaN NaN NaN NaN NaN NaN 21.261 1 18.568 18.068 19.068 -2.693 0 0 0 0.97348 1 11365 11365 5.7604 0 1 + 2844 26338 1914 1955 3242 3242 -0.014089106826986608 APSVRSLSL 9 Unmodified _APSVRSLSL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.27392578125 2 465.274367 928.53418 1.0827 0.00050376 -0.61917 -0.00028809 0.46354 0.00021567 465.27408629900657 46.379 0.27096 46.379 46.252 46.523 0 20 12 2 0 0 0 0.11784 1 25347 25347 31.268 3.6395 1 2892300 2845 9250 1915 1956 3243 3243 0.06705473788815652 APSVRSLSL 9 Unmodified _APSVRSLSL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2744445800781 2 465.274367 928.53418 0.47872 0.00022274 -0.34109 -0.0001587 0.13763 6.4036E-05 465.27420691505057 46.561 0.35123 46.224 46.053 46.404 -0.33664 43 17 4 0 0 0 0.0082981 2 24886 24886;24993 96.936 20.111 1 30939000 2846 9250 1915 1956 3244;3245 3244 0.06705473788815652 APSVRSLSL 9 Unmodified _APSVRSLSL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2745361328125 2 465.274367 928.53418 0.84683 0.00039401 -0.65564 -0.00030505 0.19119 8.8958E-05 465.2740153030434 46.278 0.27001 46.244 46.12 46.39 -0.033417 31 12 3 0 0 0 0.0089732 1 24866 24866 86.332 10.571 1 13485000 2847 9250 1915 1956 3246 3246 0.06705473788815652 APSVRSLSL 9 Unmodified _APSVRSLSL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2744445800781 2 465.274367 928.53418 0.52524 0.00024438 -0.066456 -3.092E-05 0.45878 0.00021346 465.2742327783809 51.663 0.43323 46.014 45.818 46.251 -5.649 50 27 2 0 0 0 0.0082981 2 32485 32485;32610 96.936 20.111 1 122460000 2848 9250 1915 1956 3247;3248 3247 0.06705473788815652 APSVVKISY 9 Unmodified _APSVVKISY_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.27880859375 2 482.279118 962.543683 -0.016012 -7.7223E-06 0.5599 0.00027003 0.54389 0.00026231 482.27926373712864 44.371 0.13002 44.371 44.325 44.455 0 10 6 2 0 0 0 0.033587 1 24146 24146 53.404 19.002 1 7782300 2849 1298 1916 1957 3249 3249 0.06091242074319325 APSVVKISY 9 Unmodified _APSVVKISY_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2785034179688 2 482.279118 962.543683 -0.096133 -4.6363E-05 0.49883 0.00024057 0.40269 0.00019421 482.2792844326431 44.62 0.21749 44.304 44.189 44.406 -0.31585 17 10 3 0 0 0 0.033587 1 23799 23799 53.404 19.002 1 19723000 2850 1298 1916 1957 3250 3250 0.06091242074319325 APSVVKISY 9 Unmodified _APSVVKISY_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.27978515625 2 482.279118 962.543683 0.96273 0.0004643 0.17781 8.5754E-05 1.1405 0.00055006 482.27936156401483 50.001 0.44686 44.462 44.201 44.647 -5.5391 74 28 3 0 0 0 0.0088668 2 31345 31200;31345 87.258 43.4 1 96362000 2851 1298 1916 1957 3251;3252 3252 0.06091242074319325 APSVVKVSY 9 Unmodified _APSVVKVSY_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2709350585938 2 475.271293 948.528032 0.20338 9.6658E-05 0.14676 6.9751E-05 0.35014 0.00016641 475.271404554 37.586 0.46693 37.586 37.458 37.925 0 52 23 4 0 0 0 0.0085366 2 19978 19978;20098 90.135 52.161 1 27235000 2852 4023 1917 1958 3253;3254 3253 0.05170955557287016 APSVVKVSY 9 Unmodified _APSVVKVSY_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2710266113281 2 475.271293 948.528032 0.13398 6.3675E-05 0.13702 6.5121E-05 0.27099 0.0001288 475.2712732462757 37.918 0.25705 37.647 37.525 37.782 -0.27133 31 12 3 0 0 0 0.0085366 1 19923 19923 90.135 46.277 1 12998000 2853 4023 1917 1958 3255 3255 0.05170955557287016 APSVVKVSY 9 Unmodified _APSVVKVSY_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2706298828125 2 475.271293 948.528032 -0.12482 -5.9325E-05 -1.3618 -0.00064724 -1.4867 -0.00070656 475.27054296215636 37.572 0.15803 37.59 37.515 37.673 0.01704 9 7 2 0 0 0 0.13231 1 19966 19966 29.841 11.694 1 1821200 2854 4023 1917 1958 3256 3256 0.05170955557287016 APSVVKVSY 9 Unmodified _APSVVKVSY_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2715148925781 2 475.271293 948.528032 0.93521 0.00044448 -0.50603 -0.0002405 0.42918 0.00020398 475.27094233745925 42.843 0.69755 38.159 37.747 38.444 -4.6846 113 45 4 0 0 0 0.033587 2 25864 25864;26007 53.404 19.302 1 180700000 2855 4023 1917 1958 3257;3258 3257 0.05170955557287016 APSYLSRVRD 10 Unmodified _APSYLSRVRD_ 0 0 0 REV__ENST00000438393.5_1_22:50198002-50216646:-|nuORF REV__ENST00000438393.5_1_22:50198002-50216646:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.5439147949219 3 388.543767 1162.60947 NaN NaN NaN NaN NaN NaN NaN 26.517 1 23.566 23.066 24.066 -2.9511 0 0 0 0.57227 1 14623 14623 14.957 0 1 + 2856 27052 1918 1959 3259 3259 0.034670312492153244 APSYYYCRY 9 Unmodified _APSYYYCRY_ 0 0 0 REV__nc|ENSG00000187116|A6NI73-4|LILRA5 REV__nc|ENSG00000187116|A6NI73-4|LILRA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7901611328125 2 593.255317 1184.49608 0.47186 0.00027993 2.3561 0.0013978 2.828 0.0016777 593.2561773169326 49.727 0.29729 49.727 49.629 49.926 0 20 13 2 0 0 0 0.20727 1 27488 27488 7.9102 0 1 2490800 + 2857 23622 1919 1960 3260 3260 -0.08878780188183555 APTAIRLLM 9 Oxidation (M) _APTAIRLLM(Oxidation (M))_ APTAIRLLM(1) APTAIRLLM(89) 0 0 1 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2951049804688 2 501.294245 1000.57394 0.4753 0.00023827 0.23448 0.00011754 0.70978 0.00035581 501.2943285855185 52.869 0.37765 52.806 52.603 52.981 -0.063423 46 18 3 0 0 0 0.0086209 2 28600 28600;28707 89.401 47.561 1 7632500 2858 4295 1920 1961 3261;3262 3261 767 0.07367277467881195 APTAIRLLM 9 Oxidation (M) _APTAIRLLM(Oxidation (M))_ 0 0 1 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 501.294245 1000.57394 1.5405 0.00077222 1.5561 0.00078008 3.0966 0.0015523 501.29473541760865 58.635 0.27927 52.56 52.403 52.683 -6.0745 -0.12279 0.00097186 NaN 89.401 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6774600 2859 4295 1920 1961 767 0.07367277467881195 APTDCVSSF 9 Carbamidomethyl (C) _APTDC(Carbamidomethyl (C))VSSF_ APTDC(1)VSSF APTDC(150)VSSF 0 1 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 983.4141235351562 1 983.413873 982.406597 0.87824 0.00086368 -0.37688 -0.00037063 0.50137 0.00049305 983.4132270725162 47.194 0.42471 42.114 41.894 42.318 -5.0805 57 31 3 0 0 0 0.00022959 2 29309 29181;29309 149.99 78.072 1 20287000 2860 9240 1921 1962 3263;3264 3264 863 -0.08531034867542076 APTDCVSSF 9 Carbamidomethyl (C) _APTDC(Carbamidomethyl (C))VSSF_ APTDC(1)VSSF APTDC(93)VSSF 0 1 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2112121582031 2 492.210575 982.406597 0.84244 0.00041466 0.15247 7.5049E-05 0.99491 0.00048971 492.21055576125826 47.182 0.51064 42.101 41.855 42.366 -5.0805 70 38 2 0 0 0 0.0082281 1 29214 29214 92.822 52.865 1 97580000 2861 9240 1921 1962 3265 3265 863 -0.08531034867542076 APTEDLKAL 9 Unmodified _APTEDLKAL_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2672424316406 2 479.266207 956.517862 0.36655 0.00017568 0.44298 0.00021231 0.80953 0.00038798 479.2664737141492 39.313 0.29407 39.313 39.154 39.448 0 30 13 3 0 0 0 0.012668 1 21041 21041 72.968 18.194 1 3930300 2862 2068 1922 1963 3266 3266 0.03786347832055981 APTEDLKAL 9 Unmodified _APTEDLKAL_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 479.266207 956.517862 0.6941 0.00033266 -2.8454 -0.0013637 -2.1513 -0.001031 479.2643494916403 44.361 0.14516 39.509 39.425 39.57 -4.852 0.098171 -0.0029048 NaN 72.968 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8113100 2863 2068 1922 1963 0.03786347832055981 APTGTTIKF 9 Unmodified _APTGTTIKF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.5571899414062 2 468.263468 934.512382 -0.1754 -8.2135E-05 0.19858 9.2989E-05 0.02318 1.0854E-05 468.2635237640378 42.107 0.096642 41.8 41.72 41.817 -0.30682 6 4 2 0 0 0 0.20358 1 22335 22335 10.074 1.4806 1 4198200 2864 2734 1923 1964 3267 3267 0.04250669040231969 APTIPYAEA 9 Unmodified _APTIPYAEA_ 0 0 0 REV__ENSG00000050327|ENST00000056217|ARHGEF5 REV__ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.4729614257812 1 932.472374 931.465098 0.11656 0.00010869 0.098526 9.1873E-05 0.21509 0.00020056 932.4723823356256 78.874 0.27273 78.388 78.189 78.461 -0.48596 14 10 2 0 0 0 0.39863 1 43144 43144 12.532 0.89125 1 1151100 + 2865 17258 1924 1965 3268 3268 -0.0033761023076976926 APTIPYAEA 9 Unmodified _APTIPYAEA_ 0 0 0 REV__ENSG00000050327|ENST00000056217|ARHGEF5 REV__ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 932.472374 931.465098 0.41248 0.00038463 0.84247 0.00078558 1.255 0.0011702 932.4732978460746 78.299 0.15779 78.299 78.222 78.379 0 -0.044388 0.00062316 NaN 12.532 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 276520 + 2866 17258 1924 1965 -0.0033761023076976926 APTIPYAEA 9 Unmodified _APTIPYAEA_ 0 0 0 REV__ENSG00000050327|ENST00000056217|ARHGEF5 REV__ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 932.472374 931.465098 0.11656 0.00010869 0.098526 9.1873E-05 0.21509 0.00020056 932.4723823356256 78.874 0.27273 78.388 78.189 78.461 -0.48596 0.044388 -7.0545E-05 NaN 12.532 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1151100 + 2867 17258 1924 1965 -0.0033761023076976926 APTIQQSSPG 10 Unmodified _APTIQQSSPG_ 0 0 0 nc|ENSG00000162139|Q9UQ49|NEU3;ENSG00000162139|ENST00000294064|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2532653808594 2 493.251089 984.487624 0.57553 0.00028388 2.7409 0.0013519 3.3164 0.0016358 493.25272891009917 73.392 0.18548 73.392 73.318 73.503 0 14 11 2 0 0 0 0.38092 1 40881 40881 22.736 0.98964 1 764770 2868 6837 1925 1966 3269 3269 -0.005240108331349802 APTLFFLL 8 Unmodified _APTLFFLL_ 0 0 0 REV__ENSG00000102359|ENST00000373004|SRPX2 REV__ENSG00000102359|ENST00000373004|SRPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2759399414062 2 461.275847 920.537141 0.41602 0.0001919 0.15112 6.9709E-05 0.56714 0.00026161 461.27625090388455 46.645 0.20929 41.564 41.512 41.721 -5.0805 67 48 2 0 0 0 0.44122 1 28912 28912 40.449 7.9949 1 58571000 + 2869 18235 1926 1967 3270 3270 0.07369348913618978 APTLWSQWWQ 10 Unmodified _APTLWSQWWQ_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8829956054688 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 56.913 1 56.428 55.928 56.928 -0.48554 0 0 0 0.96981 1 30924 30924 1.9064 0.45126 1 + 2870 29730 1927 1968 3271 3271 -0.019437807453869027 APTLWSQWWQ 10 Unmodified _APTLWSQWWQ_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8817443847656 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 26.637 1 26.665 26.165 27.165 0.028234 0 0 0 0.98914 1 13822 13822 0.77653 0.27058 1 + 2871 29730 1927 1968 3272 3272 -0.019437807453869027 APTPARPVL 9 Unmodified _APTPARPVL_ 0 0 0 ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2789306640625 2 461.279452 920.544351 -0.55076 -0.00025406 0.64647 0.0002982 0.095705 4.4147E-05 461.27949875144236 35.617 0.30451 35.395 35.268 35.573 -0.2224 26 13 3 0 0 0 0.03568 1 18665 18665 52.268 14.294 1 7912700 2872 9414 1928 1969 3273 3273 0.08090081514046688 APTPARPVL 9 Unmodified _APTPARPVL_ 0 0 0 ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2803955078125 2 461.279452 920.544351 0.6538 0.00030159 1.5109 0.00069695 2.1647 0.00099854 461.279692743751 39.609 0.42183 35.158 34.964 35.385 -4.4509 64 26 3 0 0 0 0.022193 2 23473 23473;23608 61.357 15.337 1 33650000 2873 9414 1928 1969 3274;3275 3274 0.08090081514046688 APTPIQALTL 10 Unmodified _APTPIQALTL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.8067626953125 2 512.8055 1023.59645 0.86092 0.00044149 -0.047542 -2.438E-05 0.81338 0.00041711 512.8057095114194 79.827 0.27139 79.337 79.235 79.507 -0.48932 20 11 2 0 0 0 0.38092 1 43711 43711 22.736 7.898 1 1041000 2874 1536 1929 1970 3276 3276 0.0855920013711966 APTQHPLSL 9 Unmodified _APTQHPLSL_ 0 0 0 ENSG00000168646|ENST00000307078|AXIN2 ENSG00000168646|ENST00000307078|AXIN2 ENSG00000168646|ENST00000307078|AXIN2 MSMS AL20221201_MKP_PDAC_01 4 482.2683715820312 2 482.266542 962.51853 NaN NaN NaN NaN NaN NaN NaN 42.009 1 37.325 36.825 37.825 -4.6846 0 0 0 0.061161 1 25316 25316 53.404 20.618 1 2875 7786 1930 1971 3277 3277 0.03577187271753246 APTRCGQAPRL 11 Unmodified _APTRCGQAPRL_ 0 0 0 REV__ENST00000592434.5_2_19:45404483-45404828:+|nuORF REV__ENST00000592434.5_2_19:45404483-45404828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5435791015625 3 390.545113 1168.61351 0.032251 1.2596E-05 -0.62717 -0.00024494 -0.59492 -0.00023234 390.5437716787845 21.069 0.19997 21.08 20.991 21.191 0.010553 69 21 4 0 0 0 0.54415 1 10750 10750 14.171 5.7264 1 11701000 + 2876 29176 1931 1972 3278 3278 0.035947974713053554 APTRCGQAPRL 11 Unmodified _APTRCGQAPRL_ 0 0 0 REV__ENST00000592434.5_2_19:45404483-45404828:+|nuORF REV__ENST00000592434.5_2_19:45404483-45404828:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.544921875 3 390.545113 1168.61351 NaN NaN NaN NaN NaN NaN NaN 25.444 1 25.469 24.969 25.969 0.024429 0 0 0 0.62192 1 13168 13168 19.987 5.8162 1 + 2877 29176 1931 1972 3279 3279 0.035947974713053554 APTSSAYEF 9 Unmodified _APTSSAYEF_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000593636.1_1_19:50321571-50322554:+|nuORF nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7191772460938 2 486.71909 971.423627 0.064085 3.1191E-05 -0.38572 -0.00018774 -0.32164 -0.00015655 486.71886241607183 44.114 0.20543 44.114 44.023 44.228 0 15 10 2 0 0 0 0.010877 1 24003 24003 77.984 41.94 1 7964500 2878 2266 1932 1973 3280 3280 -0.06322790990088833 APTSSAYEF 9 Unmodified _APTSSAYEF_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000593636.1_1_19:50321571-50322554:+|nuORF nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7194519042969 2 486.71909 971.423627 1.0935 0.00053223 -0.54638 -0.00026594 0.54712 0.00026629 486.7190757494441 50.544 0.35702 45.005 44.76 45.117 -5.5391 33 22 2 0 0 0 0.070838 1 31702 31702 39.957 7.6518 1 14903000 2879 2266 1932 1973 3281 3281 -0.06322790990088833 APTSTIVTM 9 Unmodified _APTSTIVTM_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;SAP130|p.V767Wfs*18|1|0.09|ENSG00000136715|chr2:127955082-127955082|C/-|frameshift_variant nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.4758911132812 1 920.475745 919.468469 1.0622 0.00097777 -0.75651 -0.00069635 0.30573 0.00028141 920.4752158053592 53.97 0.31833 48.105 47.964 48.283 -5.8653 26 18 2 0 0 0 0.0090851 2 34142 34142;34274 85.357 43.262 1 7255900 2880 4847 1933 1974 3282;3283 3282 0.005513165515935725 APTVGPLTSY 10 Unmodified _APTVGPLTSY_ 0 0 0 nc|ENSG00000111305|Q2KHT4-8|GSG1;nc|ENSG00000111305|Q2KHT4-5|GSG1;nc|ENSG00000111305|Q2KHT4-2|GSG1;nc|ENSG00000111305|Q2KHT4-3|GSG1;nc|ENSG00000111305|Q2KHT4-6|GSG1;nc|ENSG00000111305|Q2KHT4|GSG1;ENSG00000111305|ENST00000651961|GSG1 nc|ENSG00000111305|Q2KHT4-8|GSG1 nc|ENSG00000111305|Q2KHT4-8|GSG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2666625976562 2 503.266207 1004.51786 1.6547 0.00083277 -1.5529 -0.00078152 0.10184 5.1252E-05 503.2656771843275 47.571 0.31809 42.338 42.197 42.515 -5.2339 25 18 2 0 0 0 0.24625 1 29524 29524 30.637 7.9003 1 7948500 2881 16117 1934 1975 3284 3284 0.015783478320372524 APTYRFERL 9 Unmodified _APTYRFERL_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.8765563964844 3 384.876857 1151.60874 NaN NaN NaN NaN NaN NaN NaN 38.634 1 38.347 37.847 38.847 -0.28687 0 0 0 0.22437 1 20346 20346 21.59 6.633 1 2882 7815 1935 1976 3285 3285 0.03900236600179596 APTYRFERL 9 Unmodified _APTYRFERL_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8775024414062 3 384.876857 1151.60874 1.1528 0.00044367 -0.83263 -0.00032046 0.32013 0.00012321 384.876662249136 42.27 0.35709 37.586 37.39 37.747 -4.6846 48 22 3 0 0 0 0.46501 1 25476 25476 9.544 2.0669 1 12255000 2883 7815 1935 1976 3286 3286 0.03900236600179596 APVAGLPAF 9 Unmodified _APVAGLPAF_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 842.4786376953125 1 842.477066 841.469789 0.16089 0.00013555 0.83613 0.00070442 0.99702 0.00083997 842.4776536226552 72.924 0.31078 72.449 72.273 72.583 -0.47588 23 13 2 0 0 0 0.085487 2 39856 39856;39953 36.466 8.2929 1 1072600 2884 8712 1936 1977 3287;3288 3287 0.04271318702649296 APVALVVHM 9 Unmodified _APVALVVHM_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7701110839844 2 468.770406 935.526258 0.93407 0.00043786 -0.17368 -8.1416E-05 0.76039 0.00035645 468.77040925409113 64.853 0.35851 58.677 58.509 58.868 -6.1757 28 19 2 0 0 0 0.016115 1 42025 42025 67.413 39.24 1 14104000 2885 349 1937 1978 3289 3289 0.0559162326767364 APVATVPAM 9 Oxidation (M) _APVATVPAM(Oxidation (M))_ APVATVPAM(1) APVATVPAM(71) 0 0 1 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.4539794921875 1 872.454616 871.447339 -0.33978 -0.00029644 0.19371 0.000169 -0.14607 -0.00012744 872.454748917517 30.821 0.24199 30.821 30.69 30.932 0 19 11 2 0 0 0 0.013419 1 15995 15995 70.865 32.713 1 2238900 2886 3894 1938 1979 3290 3290 695 0.00647351242730565 APVATVPAM 9 Oxidation (M) _APVATVPAM(Oxidation (M))_ APVATVPAM(1) APVATVPAM(78) 0 0 1 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7305603027344 2 436.730946 871.447339 -0.27349 -0.00011944 -0.61389 -0.00026811 -0.88739 -0.00038755 436.7307809892941 30.82 0.42938 30.82 30.524 30.953 0 49 20 4 0 0 0 0.010712 2 15996 15996;16101 78.445 27.59 1 19584000 2887 3894 1938 1979 3291;3292 3291 695 0.00647351242730565 APVATVPAM 9 Oxidation (M) _APVATVPAM(Oxidation (M))_ APVATVPAM(1) APVATVPAM(110) 0 0 1 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7303466796875 2 436.730946 871.447339 0.60546 0.00026442 0.30189 0.00013185 0.90735 0.00039627 436.73099762876296 36.444 0.4307 32.251 32.082 32.513 -4.1928 44 26 2 0 0 0 0.0067239 2 21262 21262;21382 112.56 34.038 1 37043000 2888 3894 1938 1979 3293;3294 3293 695 0.00647351242730565 APVATVPAM 9 Unmodified _APVATVPAM_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7337036132812 2 428.733489 855.452425 0.81341 0.00034874 -0.23992 -0.00010286 0.57349 0.00024588 428.73335214798254 56.971 0.47848 50.994 50.703 51.181 -5.9769 48 28 2 0 0 0 0.010712 2 36294 36294;36434 78.445 31.524 1 50481000 2889 3894 1938 1980 3295;3296 3295 0.01891655105339396 APVATVPAM 9 Unmodified _APVATVPAM_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 856.45849609375 1 856.459701 855.452425 0.49629 0.00042505 0.2321 0.00019879 0.72839 0.00062384 856.4596400460679 56.948 0.33963 50.971 50.79 51.13 -5.9769 31 20 2 0 0 0 0.0084408 1 36308 36308 98.807 45.232 1 23827000 2890 3894 1938 1980 3297 3297 0.01891655105339396 APVDPPVVY 9 Unmodified _APVDPPVVY_ 0 0 0 nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.5087280273438 1 956.50876 955.501483 0.16817 0.00016085 -1.4251 -0.0013631 -1.2569 -0.0012023 956.5074819160659 53.549 0.25309 53.549 53.353 53.606 0 20 11 2 0 0 0 0.042911 1 29632 29632 48.346 27.892 1 2132900 2891 8373 1939 1981 3298 3298 0.02195266665944473 APVDPPVVY 9 Unmodified _APVDPPVVY_ 0 0 0 nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2103881835938 2 478.758018 955.501483 0.53705 0.00025712 0.68534 0.00032811 1.2224 0.00058523 478.75878983423485 53.475 0.36387 53.475 53.281 53.645 0 28 16 2 0 0 0 0.17275 1 29697 29697 21.747 3.6117 1 4596400 2892 8373 1939 1981 3299 3299 0.02195266665944473 APVELRYVF 9 Unmodified _APVELRYVF_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2;nc|ENSG00000196865|Q8NBF2-2|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3060302734375 2 547.305667 1092.59678 0.33881 0.00018543 0.77198 0.00042251 1.1108 0.00060794 547.3061541433136 68.425 0.41821 67.944 67.804 68.223 -0.48071 33 18 3 0 0 0 0.07087 1 37375 37375 39.95 20.693 1 3297700 2893 9877 1940 1982 3300 3300 0.05418619857005069 APVELRYVF 9 Unmodified _APVELRYVF_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2;nc|ENSG00000196865|Q8NBF2-2|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 547.305667 1092.59678 0.37235 0.00020379 2.4075 0.0013176 2.7798 0.0015214 547.306946044251 67.872 0.33307 67.892 67.75 68.083 0.020706 -0.025739 0.0012237 NaN 39.95 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1556200 2894 9877 1940 1982 0.05418619857005069 APVEVTHNF 9 Unmodified _APVEVTHNF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2547607421875 2 507.256174 1012.49779 0.38389 0.00019473 -0.31533 -0.00015995 0.068557 3.4776E-05 507.2559387365453 35.888 0.45341 35.888 35.713 36.167 0 68 22 5 0 0 0 0.014417 2 18952 18952;19059 69.105 38.468 1 163690000 2895 293 1941 1983 3301;3302 3301 -0.007954031079066226 APVEVTHNF 9 Unmodified _APVEVTHNF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2561645507812 2 507.256174 1012.49779 -0.82933 -0.00042068 1.0305 0.00052273 0.20118 0.00010205 507.2566526542271 36.105 0.12203 35.855 35.805 35.927 -0.2497 8 5 2 0 0 0 0.078314 1 18950 18950 38.176 18.919 1 3088600 2896 293 1941 1983 3303 3303 -0.007954031079066226 APVEVTHNF 9 Unmodified _APVEVTHNF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2567443847656 2 507.256174 1012.49779 0.96853 0.00049129 0.48629 0.00024667 1.4548 0.00073796 507.2564632896045 40.762 0.57668 36.233 35.918 36.494 -4.5294 109 35 4 0 0 0 0.0082353 3 24352 24227;24352;24482 96.111 52.253 1 309100000 2897 293 1941 1983 3304;3305;3306 3305 -0.007954031079066226 APVFFPTM 8 Unmodified _APVFFPTM_ 0 0 0 REV__ENST00000442760.2_1_13:45914489-45915204:-|nuORF REV__ENST00000442760.2_1_13:45914489-45915204:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2324829101562 2 455.230582 908.446611 0.47998 0.0002185 2.2841 0.0010398 2.764 0.0012583 455.23236287491136 45.155 0.45149 40.303 40.115 40.567 -4.852 48 30 2 0 0 0 0.5953 1 27689 27689 26.341 2.1313 1 15272000 + 2898 27104 1942 1984 3307 3307 -0.011274434063125227 APVFGPLGHR 10 Unmodified _APVFGPLGHR_ 0 0 0 REV__ENST00000380913.7_1_X:9915219-9915453:+|nuORF REV__ENST00000380913.7_1_X:9915219-9915453:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8660888671875 3 350.866293 1049.57705 NaN NaN NaN NaN NaN NaN NaN 37.797 1 37.814 37.314 38.314 0.01704 0 0 0 0.83398 1 20081 20081 6.1918 0 1 + 2899 26322 1943 1985 3308 3308 0.05424288636891106 APVFLFFFF 9 Unmodified _APVFLFFFF_ 0 0 0 ENST00000352410.8_1_15:75190564-75190915:+|nuORF ENST00000352410.8_1_15:75190564-75190915:+|nuORF ENST00000352410.8_1_15:75190564-75190915:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.6935729980469 3 378.872273 1133.59499 1.1067 0.0004193 1.9296 0.00073106 3.0363 0.0011504 378.8728602525337 35.325 0.26223 31.23 31.105 31.367 -4.0951 28 15 2 0 0 0 0.203 1 20411 20411 2.9952 0 1 14980000 2900 12049 1944 1986 3309 3309 0.033536108390535446 APVGGHILSY 10 Unmodified _APVGGHILSY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2735900878906 2 507.274367 1012.53418 0.17659 8.9577E-05 -0.051048 -2.5896E-05 0.12554 6.3682E-05 507.27439827702943 44.273 0.28569 44.273 44.131 44.417 0 38 14 4 0 0 0 0.0044003 2 24139 24035;24139 100.37 35.136 1 50858000 2901 10015 1945 1987 3310;3311 3311 0.028414737888056152 APVGGHILSY 10 Unmodified _APVGGHILSY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2740783691406 2 507.274367 1012.53418 -0.55791 -0.00028301 0.63466 0.00032195 0.076746 3.8931E-05 507.27471936487075 44.518 0.32668 44.202 44.059 44.386 -0.31585 54 20 4 0 0 0 6.3408E-07 2 23694 23694;23798 133.7 68.467 1 172980000 2902 10015 1945 1987 3312;3313 3312 0.028414737888056152 APVGGHILSY 10 Unmodified _APVGGHILSY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.275146484375 2 507.274367 1012.53418 0.93703 0.00047533 0.53168 0.00026971 1.4687 0.00074504 507.27464272280724 50.073 0.73953 44.533 44.218 44.957 -5.5391 161 45 5 0 0 0 0.0057604 3 31180 31180;31318;31457 96.285 31.05 1 790950000 2903 10015 1945 1987 3314;3315;3316 3314 0.028414737888056152 APVGHSGIWSF 11 Unmodified _APVGHSGIWSF_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2902221679688 2 579.290548 1156.56654 0.81666 0.00047308 -0.7231 -0.00041889 0.093552 5.4194E-05 579.2898669973206 63.297 0.41112 63.275 63.089 63.5 -0.021614 50 20 3 0 0 0 0.0011251 1 34605 34605 81.89 50.622 1 14362000 2904 4333 1946 1988 3317 3317 -0.005477388081999379 APVGHSGIWSF 11 Unmodified _APVGHSGIWSF_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2894897460938 2 579.290548 1156.56654 0.65732 0.00038078 -1.9948 -0.0011556 -1.3375 -0.00077481 579.2888556610773 68.141 0.41611 61.966 61.754 62.17 -6.1757 42 24 2 0 0 0 2.9767E-06 1 44522 44522 99.799 67.013 1 37911000 2905 4333 1946 1988 3318 3318 -0.005477388081999379 APVGSLVMTV 10 Unmodified _APVGSLVMTV_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7790832519531 2 487.272978 972.531403 0.11565 5.6353E-05 -3.1172 -0.0015189 -3.0016 -0.0014626 487.27148515384016 51.305 0.30889 50.891 50.64 50.949 -0.41351 36 15 3 0 0 0 0.22149 1 27559 27559 14.838 0 1 3985700 2906 1378 1947 1989 3319 3319 0.04403882339624943 APVINPQV 8 Unmodified _APVINPQV_ 0 0 0 ENSG00000186628|ENST00000334574|FSD2;nc|ENSG00000186628|A1L4K1-2|FSD2;FSD2|p.S373Y|1|0.23|ENSG00000186628|chr15:82772222-82772222|G/T|missense_variant ENSG00000186628|ENST00000334574|FSD2 ENSG00000186628|ENST00000334574|FSD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.4844360351562 1 837.482879 836.475603 0.68109 0.0005704 -0.52173 -0.00043694 0.15936 0.00013346 837.4827921449116 67.004 0.32209 60.829 60.698 61.02 -6.1757 27 17 2 0 0 0 0.21786 2 43569 43569;43699 67.035 13.46 1 16293000 2907 9488 1948 1990 3320;3321 3320 0.05082417214327961 APVKADARELY 11 Unmodified _APVKADARELY_ 0 0 0 REV__nc|ENSG00000173809|Q587J7|TDRD12 REV__nc|ENSG00000173809|Q587J7|TDRD12 MSMS AL20221201_MKP_PDAC_01 4 411.5587768554688 3 411.559305 1231.65609 NaN NaN NaN NaN NaN NaN NaN 61.015 1 54.867 54.367 55.367 -6.1478 0 0 0 0.69464 1 39279 39279 9.7643 2.2872 1 + 2908 22750 1949 1991 3322 3322 0.04952471080514442 APVKENIPY 9 Unmodified _APVKENIPY_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7815551757812 2 515.782025 1029.5495 0.22978 0.00011851 -1.7365 -0.00089565 -1.5067 -0.00077714 515.7805671392732 39.874 0.39963 35.345 35.096 35.496 -4.5294 43 27 2 0 0 0 0.013041 1 23794 23794 71.922 39.617 1 29683000 2909 4360 1950 1992 3323 3323 0.035903405860153725 APVKIIDF 8 Unmodified _APVKIIDF_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7707214355469 2 451.770929 901.527304 0.23175 0.0001047 0.41553 0.00018772 0.64727 0.00029242 451.771042592848 78.932 0.26972 78.446 78.349 78.619 -0.48596 19 11 2 0 0 0 0.80044 1 43245 43245 6.3541 1.1234 1 544830 2910 6846 1951 1993 3324 3324 0.07260160908242597 APVKLRESV 9 Unmodified _APVKLRESV_ 0 0 0 nc|ENSG00000138709|Q659C4-4|LARP1B;nc|ENSG00000138709|Q659C4-9|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B nc|ENSG00000138709|Q659C4-4|LARP1B nc|ENSG00000138709|Q659C4-4|LARP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.8025817871094 2 499.803291 997.59203 0.1872 9.3561E-05 0.50569 0.00025275 0.69289 0.00034631 499.8032048255487 35.728 0.16056 35.728 35.635 35.796 0 9 7 2 0 0 0 0.46577 1 18921 18921 9.3474 0.75416 1 1238200 2911 5091 1952 1994 3325 3325 0.09313735714238192 APVLLSQKF 9 Unmodified _APVLLSQKF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.8036804199219 2 501.80276 1001.59097 -0.10402 -5.2197E-05 -0.083257 -4.1779E-05 -0.18728 -9.3976E-05 501.80311927752547 54.996 0.23989 54.518 54.389 54.629 -0.47798 20 11 2 0 0 0 0.06294 1 29852 29852 41.84 13.353 1 1843000 2912 4951 1953 1995 3326 3326 0.09023521345329755 APVLLSQKF 9 Unmodified _APVLLSQKF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.8026428222656 2 501.80276 1001.59097 0.24279 0.00012183 0.050483 2.5332E-05 0.29328 0.00014717 501.8028489061485 54.652 0.30316 54.585 54.443 54.746 -0.066936 42 14 4 0 0 0 0.0085164 2 29655 29655;29762 99.799 59.842 1 18514000 2913 4951 1953 1995 3327;3328 3327 0.09023521345329755 APVLYWLLI 9 Unmodified _APVLYWLLI_ 0 0 0 REV__ENSG00000198569|ENST00000673835|SLC34A3 REV__ENSG00000198569|ENST00000673835|SLC34A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2235412597656 3 363.223194 1086.64775 -0.21656 -7.866E-05 0.30539 0.00011092 0.088826 3.2264E-05 363.22343817558794 35.934 0.4643 35.959 35.786 36.25 0.024967 48 21 3 0 0 0 0.58466 1 19010 19010 1.1933 0 1 7908300 + 2914 24026 1954 1996 3329 3329 0.10789568901850544 APVMQVPKMKR 11 Unmodified _APVMQVPKMKR_ 0 0 0 REV__ENSG00000184194|ENST00000332582|GPR173 REV__ENSG00000184194|ENST00000332582|GPR173 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 428.5536193847656 3 428.914149 1283.72062 0.98153 0.00042099 -0.17626 -7.5602E-05 0.80527 0.00034539 428.9137316539045 18.879 0.26552 16.257 16.173 16.439 -2.6215 42 16 4 0 0 0 0.30558 1 9977 9977 2.4348 0.18206 1 5352600 + 2915 23404 1955 1997 3330 3330 0.09010631361297783 APVMSMVTY 9 2 Oxidation (M) _APVM(Oxidation (M))SM(Oxidation (M))VTY_ APVM(1)SM(1)VTY APVM(74)SM(74)VTY 0 0 2 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9;nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.73193359375 2 515.732828 1029.4511 NaN NaN NaN NaN NaN NaN NaN 34.031 1 34.031 33.531 34.531 0 0 0 0 0.0233 1 17896 17896 74.396 44.171 1 2916 578 1956 1998 3331 3331 82;83 -0.062443470457083095 APVMSMVTY 9 Oxidation (M) _APVMSM(Oxidation (M))VTY_ APVM(0.003)SM(0.997)VTY APVM(-25)SM(25)VTY 0 0 1 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9;nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7359924316406 2 507.735371 1013.45619 1.1365 0.00057706 -0.80784 -0.00041017 0.3287 0.00016689 507.73457417212524 53.967 0.38287 48.102 47.883 48.266 -5.8653 31 22 2 0 0 0 0.03327 1 34172 34172 53.576 21.459 2 13342000 2917 578 1956 1999 3332 3332 82;83 -0.050000431830994785 APVNIAVIKY 10 Unmodified _APVNIAVIKY_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562741.1_1_16:88729419-88729524:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3289184570312 2 544.329142 1086.64373 0.031992 1.7414E-05 -0.20821 -0.00011334 -0.17622 -9.5921E-05 544.3290934986045 58.268 0.26342 57.777 57.658 57.921 -0.49079 31 12 3 0 0 0 0.00080371 1 31657 31657 114.65 70.791 1 6295500 2918 7617 1957 2000 3333 3333 0.10387479408132094 APVNIAVIKY 10 Unmodified _APVNIAVIKY_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562741.1_1_16:88729419-88729524:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3295288085938 2 544.329142 1086.64373 0.81596 0.00044415 0.043478 2.3667E-05 0.85944 0.00046782 544.3291298239538 57.884 0.27513 57.818 57.655 57.93 -0.066036 34 13 3 0 0 0 1.8216E-05 1 31486 31486 126.57 80.545 1 12834000 2919 7617 1957 2000 3334 3334 0.10387479408132094 APVNIAVIKY 10 Unmodified _APVNIAVIKY_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562741.1_1_16:88729419-88729524:-|nuORF;ENST00000563785.5_1_16:88722464-88729488:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3299560546875 2 544.329142 1086.64373 1.1001 0.00059879 0.34704 0.0001889 1.4471 0.0007877 544.3295300466089 63.783 0.48585 57.607 57.375 57.861 -6.1757 65 26 3 0 0 0 3.9936E-08 2 41346 41217;41346 147.06 88.38 1 37654000 2920 7617 1957 2000 3335;3336 3336 0.10387479408132094 APVPAPDNTVF 11 Unmodified _APVPAPDNTVF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2911376953125 2 564.290214 1126.56587 0.47727 0.00026932 0.8499 0.00047959 1.3272 0.00074891 564.290784716105 58.02 0.1858 58.02 57.917 58.103 0 13 7 2 0 0 0 0.25654 1 32295 32295 29.082 11.969 1 1093300 2921 16188 1958 2001 3337 3337 0.007654217520894235 APVPLYNSF 9 Unmodified _APVPLYNSF_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2633666992188 2 504.263468 1006.51238 -0.20934 -0.00010556 0.78645 0.00039658 0.5771 0.00029101 504.2636556968308 68.873 0.39997 68.392 68.18 68.58 -0.48071 45 17 3 0 0 0 0.0089973 2 37687 37585;37687 86.121 54.004 1 7653000 2922 3174 1959 2002 3338;3339 3339 0.009386690402379827 APVPLYNSF 9 Unmodified _APVPLYNSF_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2638854980469 2 504.263468 1006.51238 0.82773 0.0004174 0.37683 0.00019002 1.2046 0.00060742 504.2637323001773 75.37 0.55827 69.194 68.906 69.465 -6.1757 69 30 3 0 0 0 0.03327 2 49249 49249;49384 53.576 22.939 1 24342000 2923 3174 1959 2002 3340;3341 3340 0.009386690402379827 APVPLYNSF 9 Unmodified _APVPLYNSF_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 504.263468 1006.51238 0.58065 0.0002928 1.5017 0.00075727 2.0824 0.0010501 504.26421322752634 68.313 0.19888 68.338 68.3 68.499 0.025146 -0.027197 0.00059783 NaN 86.121 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 933130 2924 3174 1959 2002 0.009386690402379827 APVPTGEVY 9 Unmodified _APVPTGEVY_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.471923828125 1 932.472374 931.465098 -0.11164 -0.0001041 -0.45599 -0.0004252 -0.56763 -0.0005293 932.4719393710463 41.533 0.40726 41.533 41.344 41.751 0 48 20 3 0 0 0 0.0067112 2 22454 22332;22454 112.59 45.249 1 23763000 2925 3984 1960 2003 3342;3343 3343 -0.0033761023076976926 APVPTGEVY 9 Unmodified _APVPTGEVY_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4739379882812 1 932.472374 931.465098 0.85103 0.00079356 -0.069838 -6.5122E-05 0.78119 0.00072844 932.4720513760063 48.743 0.40065 43.347 43.139 43.54 -5.3961 43 23 3 0 0 0 0.000405 3 30435 30296;30309;30435 146.01 56.581 1 52021000 2926 3984 1960 2003 3344;3345;3346 3346 -0.0033761023076976926 APVPTGEVY 9 Unmodified _APVPTGEVY_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.739990234375 2 466.739825 931.465098 0.72322 0.00033756 0.29757 0.00013889 1.0208 0.00047644 466.73954482201566 48.814 0.60777 43.418 43.054 43.661 -5.3961 61 36 2 0 0 0 0.027803 1 30425 30425 56.541 2.9657 1 73534000 2927 3984 1960 2003 3347 3347 -0.0033761023076976926 APVPTTTLVL 10 Unmodified _APVPTTTLVL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.306884765625 2 506.307875 1010.6012 0.32077 0.00016241 -0.1547 -7.8325E-05 0.16607 8.4083E-05 506.3076502776931 73.969 0.30258 73.493 73.412 73.714 -0.47588 20 13 2 0 0 0 0.2829 1 40493 40493 28.487 0 1 911440 2928 6628;16309;16310 1961 2004 3348 3348 0.0963208427989457 APVQILQEY 9 Unmodified _APVQILQEY_ 0 0 0 ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.786865234375 2 530.787307 1059.56006 0.29808 0.00015822 -1.0584 -0.00056179 -0.76033 -0.00040357 530.786767085266 62.423 0.28434 62.423 62.304 62.589 0 37 19 2 0 0 0 0.11784 1 34800 34800 42.095 13.608 1 13852000 2929 6113 1962 2005 3349 3349 0.03266323240427482 APVQILQEY 9 Unmodified _APVQILQEY_ 0 0 0 ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.78662109375 2 530.787307 1059.56006 0.38591 0.00020484 -1.0399 -0.00055199 -0.65404 -0.00034715 530.7867565323054 62.964 0.24969 62.478 62.44 62.689 -0.48617 13 11 2 0 0 0 0.34134 1 34366 34366 21.747 8.2388 1 3758900 2930 6113 1962 2005 3350 3350 0.03266323240427482 APVQPSQVEY 10 Unmodified _APVQPSQVEY_ 0 0 0 ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;ENST00000535202.1_1_12:132211588-132237909:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2803344726562 2 559.279846 1116.54514 0.34692 0.00019402 0.79316 0.0004436 1.1401 0.00063762 559.280130568804 37.777 0.33956 37.777 37.586 37.925 0 38 16 3 0 0 0 0.13391 1 20134 20134 41.84 16.44 1 7930500 2931 843 1963 2006 3351 3351 -0.00847168627569772 APVQPSQVEY 10 Unmodified _APVQPSQVEY_ 0 0 0 ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP;ENST00000535202.1_1_12:132211588-132237909:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.0211181640625 2 559.279846 1116.54514 0.70362 0.00039352 3.1463 0.0017596 3.8499 0.0021532 559.2821825069882 44.25 0.29275 39.398 39.264 39.557 -4.852 34 21 2 0 0 0 0.070602 1 26969 26969 57.722 7.789 1 11839000 2932 843 1963 2006 3352 3352 -0.00847168627569772 APVQRPKL 8 Unmodified _APVQRPKL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;ENST00000440433.1_1_X:64770780-64771062:-|nuORF ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7882385253906 2 454.787444 907.560336 0.34421 0.00015654 -0.32319 -0.00014698 0.021019 9.559E-06 454.787323822423 24.266 0.27603 21.439 21.305 21.581 -2.8273 21 15 2 0 0 0 0.31612 1 13183 13183 53.576 15.424 1 4587700 2933 3945 1964 2007 3353 3353 0.1028578775093365 APVRISITL 9 Unmodified _APVRISITL_ 0 0 0 ENST00000445714.1_1_10:27638689-27639127:-|nuORF;ENSG00000124098|ENST00000371384|FAM210B ENST00000445714.1_1_10:27638689-27639127:-|nuORF ENST00000445714.1_1_10:27638689-27639127:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3080749511719 2 485.30821 968.601866 0.79285 0.00038478 -0.5899 -0.00028628 0.20294 9.8491E-05 485.30768810095435 64.809 0.25932 64.809 64.697 64.956 7.6294E-06 20 12 2 0 0 0 0.015688 1 35518 35518 67.838 10.116 1 4242000 2934 3745 1965 2008 3354 3354 0.11630923719621933 APVRLLPSY 9 Unmodified _APVRLLPSY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;ENST00000503492.5_1_5:141233609-141235795:-|nuORF ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.3001403808594 2 508.300384 1014.58622 -0.27071 -0.0001376 0.92236 0.00046884 0.65165 0.00033124 508.3004722362079 54.559 0.31886 54.092 53.882 54.201 -0.46664 28 16 2 0 0 0 0.017075 1 29594 29594 66.457 46.003 1 4410800 2935 6453 1966 2009 3355 3355 0.07950637202566213 APVRLLPSY 9 Unmodified _APVRLLPSY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;ENST00000503492.5_1_5:141233609-141235795:-|nuORF ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3019409179688 2 508.300384 1014.58622 0.15203 7.7276E-05 2.0711 0.0010527 2.2231 0.00113 508.30097983030157 54.143 0.59316 54.076 53.725 54.319 -0.06694 51 29 3 0 0 0 0.011671 2 29353 29353;29451 75.761 48.877 1 19644000 2936 6453 1966 2009 3356;3357 3356 0.07950637202566213 APVRLLPSY 9 Unmodified _APVRLLPSY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;ENST00000503492.5_1_5:141233609-141235795:-|nuORF ENSG00000156453|ENST00000287008|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MSMS AL20221201_MKP_PDAC_01 4 508.299072265625 2 508.300384 1014.58622 NaN NaN NaN NaN NaN NaN NaN 75.221 1 69.045 68.545 69.545 -6.1757 0 0 0 0.02218 1 49192 49192 75.761 48.877 1 2937 6453 1966 2009 3358 3358 0.07950637202566213 APVRNQHL 8 Unmodified _APVRNQHL_ 0 0 0 REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7651062011719 2 467.764501 933.514448 NaN NaN NaN NaN NaN NaN NaN 67.73 1 67.73 67.23 68.23 0 0 0 0 0.9706 1 37767 37767 6.3541 0 1 + 2938 23545 1967 2010 3359 3359 0.045031425686943294 APVRRDRVL 9 Unmodified _APVRRDRVL_ 0 0 0 nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000483554.1_1_17:27043919-27044341:-|nuORF nc|ENSG00000109113|Q9BZG1-4|RAB34 nc|ENSG00000109113|Q9BZG1-4|RAB34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2247924804688 3 361.22448 1080.65161 1.3005 0.00046975 0.48301 0.00017447 1.7835 0.00064423 361.22460901836996 18.156 0.31868 15.535 15.372 15.69 -2.6215 63 24 3 0 0 0 0.42049 1 9587 9587 11.495 0.6952 1 15772000 2939 2633 1968 2011 3360 3360 0.11451051448261751 APVRSHGLVL 10 Unmodified _APVRSHGLVL_ 0 0 0 ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.2136535644531 3 350.213581 1047.61891 -0.29673 -0.00010392 -0.2367 -8.2896E-05 -0.53343 -0.00018681 350.5476806218673 34.415 0.26603 34.224 34.046 34.312 -0.19131 19 10 3 0 0 0 0.1942 1 17983 17983 29.437 4.5556 1 4027900 2940 11088 1969 2012 3361 3361 0.09700844325402613 APVRSHGLVL 10 Unmodified _APVRSHGLVL_ 0 0 0 ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.5479431152344 3 350.213581 1047.61891 0.039986 1.4004E-05 0.058594 2.052E-05 0.09858 3.4524E-05 350.54808551140303 34.126 0.23194 34.155 34.014 34.246 0.028934 26 10 3 0 0 0 0.48505 1 17974 17974 14.957 2.7165 1 3103500 2941 11088 1969 2012 3362 3362 0.09700844325402613 APVRSHGLVL 10 Unmodified _APVRSHGLVL_ 0 0 0 ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF ENST00000236980.10_1_2:207630338-207630374:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2140502929688 3 350.213581 1047.61891 1.9287 0.00067544 -0.44385 -0.00015544 1.4848 0.00052 350.21338532792305 37.613 0.47178 33.244 33.001 33.473 -4.3689 68 27 3 0 0 0 0.46077 1 22009 22009 12.228 2.6836 1 53450000 2942 11088 1969 2012 3363 3363 0.09700844325402613 APVSFFLVL 9 Unmodified _APVSFFLVL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5792846679688 1 992.581531 991.574254 0.70722 0.00070197 -0.75724 -0.00075162 -0.050023 -4.9652E-05 992.5805842522138 102.06 0.10416 95.88 95.814 95.918 -6.1757 10 4 3 0 0 0 0.0094915 1 68496 68496 81.864 37.457 1 5891400 2943 1799 1970 2013 3364 3364 0.07813020459366271 APVSFFLVL 9 Unmodified _APVSFFLVL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7952270507812 2 496.794404 991.574254 0.87029 0.00043235 -0.51191 -0.00025431 0.35838 0.00017804 496.79421156412593 102.04 0.10416 95.867 95.814 95.918 -6.1757 9 4 3 0 0 0 0.012158 1 68499 68499 74.396 29.989 1 12622000 2944 1799 1970 2013 3365 3365 0.07813020459366271 APVSGPRL 8 Unmodified _APVSGPRL_ 0 0 0 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5400390625 2 398.73742 795.460287 -0.48411 -0.00019303 -1.2077 -0.00048156 -1.6918 -0.00067459 398.73733910675935 30.821 0.2022 30.821 30.69 30.892 0 14 9 2 0 0 0 8.7369 1 15988 15988 14.838 0 1 1716000 2945 4715 1971 2014 3366 3366 0.054375504171389366 APVSGPRL 8 Unmodified _APVSGPRL_ 0 0 0 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 ENSG00000135521|ENST00000367576|LTV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.7375793457031 2 398.73742 795.460287 0.9442 0.00037649 -0.25462 -0.00010153 0.68958 0.00027496 398.7373174609148 34.639 0.37067 30.544 30.348 30.718 -4.0951 40 21 3 0 0 0 0.17035 1 19942 19942 81.864 11.149 1 21007000 2946 4715 1971 2014 3367 3367 0.054375504171389366 APVTEFLSP 9 Unmodified _APVTEFLSP_ 0 0 0 REV__ENST00000542440.5_1_12:122269651-122270002:+|nuORF REV__ENST00000542440.5_1_12:122269651-122270002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5023193359375 1 960.503674 959.496398 0.042685 4.0999E-05 1.8181 0.0017463 1.8607 0.0017873 960.5057582977377 79.547 0.28973 79.547 79.372 79.662 0 23 11 3 0 0 0 0.37804 1 44139 44139 13.508 3.3245 1 1000500 + 2947 28613 1972 2015 3368 3368 0.015029628033175868 APVTHAGALAI 11 Unmodified _APVTHAGALAI_ 0 0 0 REV__ENSG00000176922|ENST00000322101|OR51S1 REV__ENSG00000176922|ENST00000322101|OR51S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7936706542969 2 510.795466 1019.57638 0.30127 0.00015389 1.3846 0.00070723 1.6858 0.00086112 511.29768380666616 86.392 0.89471 85.888 85.296 86.191 -0.50318 88 36 4 0 0 0 0.53099 1 47239 47239 14.838 5.4908 1 1702700 + 2948 22949 1973 2016 3369 3369 0.06737449197169099 APVVSTVGM 9 Oxidation (M) _APVVSTVGM(Oxidation (M))_ APVVSTVGM(1) APVVSTVGM(67) 0 0 1 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7286987304688 2 438.728403 875.442254 0.022378 9.8178E-06 -0.51597 -0.00022637 -0.49359 -0.00021655 438.72834705999685 31.059 0.38266 31.059 30.872 31.255 0 56 18 4 0 0 0 0.016494 2 16100 16100;16200 67.035 24.941 1 29381000 + 2949 176 1974 2017 3370;3371 3370 14 -0.000449526198735839 APVVSTVGM 9 Oxidation (M) _APVVSTVGM(Oxidation (M))_ APVVSTVGM(1) APVVSTVGM(110) 0 0 1 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 876.450927734375 1 876.44953 875.442254 -0.10725 -9.4004E-05 0.03745 3.2823E-05 -0.069805 -6.118E-05 876.4497122775773 31.035 0.30201 31.035 30.912 31.214 0 35 14 3 0 0 0 0.0077963 2 16121 16121;16222 109.63 67.535 1 7219700 + 2950 176 1974 2017 3372;3373 3372 14 -0.000449526198735839 APVVSTVGM 9 Oxidation (M) _APVVSTVGM(Oxidation (M))_ APVVSTVGM(1) APVVSTVGM(50) 0 0 1 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7288818359375 2 438.728403 875.442254 0.29139 0.00012784 -0.084284 -3.6978E-05 0.20711 9.0864E-05 438.72837121161666 31.134 0.21913 31.031 30.917 31.136 -0.10269 13 8 2 0 0 0 0.040472 1 16165 16165 49.669 21.182 1 2144500 + 2951 176 1974 2017 3374 3374 14 -0.000449526198735839 APVVSTVGM 9 Oxidation (M) _APVVSTVGM(Oxidation (M))_ APVVSTVGM(1) APVVSTVGM(50) 0 0 1 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7289123535156 2 438.728403 875.442254 1.3211 0.0005796 -0.086313 -3.7868E-05 1.2348 0.00054173 438.72820135644787 37.112 0.54711 32.829 32.54 33.087 -4.2835 96 33 5 0 0 0 0.040472 3 21721 21597;21721;21848 49.669 21.182 1 124920000 + 2952 176 1974 2017 3375;3376;3377 3376 14 -0.000449526198735839 APVVSTVGM 9 Oxidation (M) _APVVSTVGM(Oxidation (M))_ APVVSTVGM(1) APVVSTVGM(150) 0 0 1 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4492797851562 1 876.44953 875.442254 1.2333 0.0010809 0.14155 0.00012406 1.3748 0.001205 876.4494056048854 37.111 0.37723 32.827 32.613 32.991 -4.2835 39 22 2 0 0 0 0.000405 2 21659 21659;21801 146.01 92.432 1 11887000 + 2953 176 1974 2017 3378;3379 3378 14 -0.000449526198735839 APVVSTVGM 9 Unmodified _APVVSTVGM_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.4556884765625 1 860.454616 859.447339 0.23608 0.00020314 0.4518 0.00038876 0.68788 0.00059189 860.4554013190776 46.702 0.23426 46.702 46.565 46.799 0 17 10 2 0 0 0 0.016494 1 25500 25500 67.035 36.811 1 2084300 + 2954 176 1974 2018 3380 3380 0.01199351242735247 APVVSTVGM 9 Unmodified _APVVSTVGM_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 860.4558715820312 1 860.454616 859.447339 0.57115 0.00049145 0.015146 1.3032E-05 0.58629 0.00050448 860.4549262656278 54.59 0.47434 48.724 48.469 48.943 -5.8653 73 29 3 0 0 0 0.0036753 3 34624 34481;34624;34761 123.1 69.521 1 80131000 + 2955 176 1974 2018 3381;3382;3383 3382 0.01199351242735247 APVVSTVGM 9 Unmodified _APVVSTVGM_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.731201171875 2 430.730946 859.447339 0.8631 0.00037176 -0.35217 -0.00015169 0.51093 0.00022007 430.73094605346887 54.553 0.50498 48.687 48.454 48.959 -5.8653 71 31 3 0 0 0 0.040472 3 34662 34521;34662;34804 49.669 24.995 1 92992000 + 2956 176 1974 2018 3384;3385;3386 3385 0.01199351242735247 APVWEPAE 8 Unmodified _APVWEPAE_ 0 0 0 ENST00000525715.5_1_11:1248569-1249984:+|nuORF ENST00000525715.5_1_11:1248569-1249984:+|nuORF ENST00000525715.5_1_11:1248569-1249984:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7193298339844 2 449.718893 897.423233 0.16078 7.2305E-05 0.46404 0.00020869 0.62481 0.00028099 449.7192059974943 31.066 0.22022 31.066 30.932 31.152 0 16 10 2 0 0 0 0.5953 1 16163 16163 26.341 4.5946 1 1816100 2957 14802 1975 2019 3387 3387 -0.02958165919289968 APVYLAAVL 9 Unmodified _APVYLAAVL_ 0 0 0 ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7790222167969 2 458.778754 915.542954 0.35936 0.00016487 0.60165 0.00027603 0.96102 0.00044089 458.77891536257687 86.755 0.4499 86.252 86.044 86.494 -0.50318 47 17 4 0 0 0 0.085487 1 47539 47539 36.466 0 1 4881000 2958 9238 1976 2020 3388 3388 0.08180447425263537 APVYMAAVL 9 Unmodified _APVYMAAVL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18 nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184260|ENST00000331380|H2AC20 ENSG00000184260|ENST00000331380|H2AC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7564086914062 2 467.756964 933.499375 0.95685 0.00044757 0.938 0.00043875 1.8948 0.00088633 467.75689820485087 83.488 0.42624 77.312 77.082 77.508 -6.1757 36 22 2 0 0 0 0.1492 1 54849 54849 28.173 0 1 10687000 2959 9236;2987 1977 2021 3389 3389 0.0299651465649049 APWANQIDM 9 Unmodified _APWANQIDM_ 0 0 0 nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE;nc|ENSG00000197713|Q96AT9-5|RPE;nc|ENSG00000197713|Q96AT9-3|RPE;nc|ENSG00000197713|Q96AT9-2|RPE nc|ENSG00000197713|Q96AT9-4|RPE nc|ENSG00000197713|Q96AT9-4|RPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2415161132812 2 523.242209 1044.46987 0.87527 0.00045798 0.7108 0.00037192 1.5861 0.0008299 523.2422348673138 67.223 0.37443 61.047 60.843 61.217 -6.1757 30 20 2 0 0 0 0.070838 1 43735 43735 39.957 16.809 1 10575000 2960 9992 1978 2022 3390 3390 -0.05059049359670098 APWAQLEAPA 10 Unmodified _APWAQLEAPA_ 0 0 0 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.27001953125 2 527.271824 1052.5291 0.33155 0.00017482 -2.9468 -0.0015538 -2.6153 -0.001379 527.2700078979536 70.858 0.43362 70.38 70.202 70.636 -0.47736 25 19 2 0 0 0 0.48834 1 38779 38779 16.942 2.104 1 1366000 2961 2851 1979 2023 3391 3391 0.0049316992619878874 APWARVDEM 9 Oxidation (M) _APWARVDEM(Oxidation (M))_ APWARVDEM(1) APWARVDEM(44) 0 0 1 ENSG00000158042|ENST00000288937|MRPL17 ENSG00000158042|ENST00000288937|MRPL17 ENSG00000158042|ENST00000288937|MRPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7527465820312 2 545.752941 1089.49133 -0.44676 -0.00024382 2.0428 0.0011149 1.596 0.00087104 545.7542207053967 33.164 0.27728 33.164 33.008 33.285 0 23 13 2 0 0 0 0.05483 1 17341 17341 43.772 18.373 1 3763100 2962 6562 1980 2024 3392 3392 1147 -0.04983664330939064 APWARVDEM 9 Oxidation (M) _APWARVDEM(Oxidation (M))_ APWARVDEM(1) APWARVDEM(50) 0 0 1 ENSG00000158042|ENST00000288937|MRPL17 ENSG00000158042|ENST00000288937|MRPL17 ENSG00000158042|ENST00000288937|MRPL17 MSMS AL20221201_MKP_PDAC_01 4 545.7542114257812 2 545.752941 1089.49133 NaN NaN NaN NaN NaN NaN NaN 37.72 1 33.351 32.851 33.851 -4.3689 0 0 0 0.076083 1 22172 22172 49.554 23.286 1 2963 6562 1980 2024 3393 3393 1147 -0.04983664330939064 APWDFNKEEV 10 Unmodified _APWDFNKEEV_ 0 0 0 REV__ENSG00000132004|ENST00000393261|FBXW9 REV__ENSG00000132004|ENST00000393261|FBXW9 MSMS AL20221201_MKP_PDAC_01 4 411.8627014160156 3 412.196144 1233.5666 NaN NaN NaN NaN NaN NaN NaN 20.662 1 17.969 17.469 18.469 -2.693 0 0 0 0.91523 1 11015 11015 3.8763 1.97 1 + 2964 19825 1981 2025 3394 3394 -0.0408378359886683 APWDSWGSS 9 Unmodified _APWDSWGSS_ 0 0 0 nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7071533203125 2 496.709057 991.40356 NaN NaN NaN NaN NaN NaN NaN 29.127 1 29.157 28.657 29.657 0.030106 0 0 0 0.6306 1 15186 15186 11.64 0.52583 1 2965 16325 1982 2026 3395 3395 -0.0924854193003739 APWFDPAIF 9 Unmodified _APWFDPAIF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1063.921875 1 1063.52474 1062.51747 2.3592 0.0025091 -0.53981 -0.0005741 1.8194 0.001935 1063.5248796363667 100.16 0.078735 100.12 100.07 100.15 -0.036301 4 2 2 0 0 0 0.0090851 1 55626 55626 85.357 59.957 1 3590100 2966 7042 1983 2027 3396 3396 -0.011290270971585414 APWFDPAIF 9 Unmodified _APWFDPAIF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 1063.524291992188 1 1063.52474 1062.51747 0.96695 0.0010284 -0.89212 -0.00094879 0.074835 7.9589E-05 1063.5240840181066 101.19 0.12406 95.011 94.939 95.064 -6.1757 13 7 3 0 0 0 0.0021514 1 67843 67843 131.3 107.51 1 64275000 2967 7042 1983 2027 3397 3397 -0.011290270971585414 APWFDPAIF 9 Unmodified _APWFDPAIF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2657470703125 2 532.26601 1062.51747 1.1146 0.00059325 -0.54489 -0.00029003 0.56968 0.00030322 532.7671814643451 101.19 0.12406 95.01 94.939 95.064 -6.1757 18 7 3 0 0 0 0.027803 1 67849 67849 56.541 39.428 1 85161000 2968 7042 1983 2027 3398 3398 -0.011290270971585414 APWFREEEVQY 11 Unmodified _APWFREEEVQY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MSMS AL20221201_MKP_PDAC_01 4 727.3405151367188 2 727.340966 1452.66738 NaN NaN NaN NaN NaN NaN NaN 63.61 1 57.434 56.934 57.934 -6.1757 0 0 0 0.019763 1 41141 41141 85.764 67.391 1 2969 2482 1984 2028 3399 3399 -0.04084751616005633 APWIEQEGPEY 11 Unmodified _APWIEQEGPEY_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF ENSG00000234745|ENST00000412585|HLA-B;ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3038330078125 2 659.801143 1317.58773 0.33348 0.00022003 -0.21999 -0.00014515 0.11349 7.488E-05 660.3018621421336 57.307 0.28894 57.307 57.221 57.51 0 27 12 3 0 0 0 0.18636 1 31954 31954 32.786 24.63 1 2729300 2970 10398;10636 1985 2029 3400 3400 -0.058358182899610256 APWIESQDWAY 11 Unmodified _APWIESQDWAY_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3107299804688 2 683.309135 1364.60372 -0.021227 -1.4505E-05 1.0565 0.00072193 1.0353 0.00070743 683.3100802693667 77.282 0.2569 77.282 77.105 77.362 0 26 10 3 0 0 0 0.631 1 42938 42938 17.113 7.039 1 1793600 2971 7784 1986 2030 3401 3401 -0.06400112053074736 APWIESQDWAY 11 Unmodified _APWIESQDWAY_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.30908203125 2 683.309135 1364.60372 -0.88931 -0.00060767 0.94648 0.00064674 0.057178 3.907E-05 683.3096767717677 77.807 0.38252 77.324 77.082 77.465 -0.4826 62 22 4 0 0 0 0.31498 2 42611 42509;42611 39.95 26.907 1 19388000 2972 7784 1986 2030 3402;3403 3403 -0.06400112053074736 APWIESQDWAY 11 Unmodified _APWIESQDWAY_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 683.31103515625 2 683.309135 1364.60372 0.28759 0.00019651 0.38962 0.00026623 0.67721 0.00046274 683.3091772949315 77.25 0.31374 77.3 77.149 77.463 0.050102 34 12 4 0 0 0 0.10976 1 42618 42618 60.074 39.659 1 7351700 2973 7784 1986 2030 3404 3404 -0.06400112053074736 APWIESQDWAY 11 Unmodified _APWIESQDWAY_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.3095092773438 2 683.309135 1364.60372 0.46112 0.00031509 0.072412 4.9479E-05 0.53353 0.00036457 683.8107011113167 85.202 0.62634 79.026 78.735 79.361 -6.1757 123 38 4 0 0 0 0.096911 3 55964 55964;56092;56220 62.573 28.842 1 181130000 2974 7784 1986 2030 3405;3406;3407 3405 -0.06400112053074736 APWKPTWPA 9 Unmodified _APWKPTWPA_ 0 0 0 ENSG00000150687|ENST00000280258|PRSS23;nc|ENSG00000150687|O95084-2|PRSS23;PRSS23|p.R36H|1|0.12|ENSG00000150687|chr11:86807750-86807750|G/A|missense_variant ENSG00000150687|ENST00000280258|PRSS23 ENSG00000150687|ENST00000280258|PRSS23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2792358398438 2 527.279452 1052.54435 NaN NaN NaN NaN NaN NaN NaN 56.271 1 56.202 55.702 56.702 -0.068737 0 0 0 0.090869 1 30601 30601 49.933 9.4844 1 2975 6068 1987 2031 3408 3408 0.02018081514052028 APWLVWES 8 Unmodified _APWLVWES_ 0 0 0 ENST00000513693.1_1_5:7690761-7690995:+|nuORF ENST00000513693.1_1_5:7690761-7690995:+|nuORF ENST00000513693.1_1_5:7690761-7690995:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2507019042969 2 494.25036 986.486168 0.89575 0.00044272 -0.43231 -0.00021367 0.46343 0.00022905 494.2500483288347 66.81 0.70284 66.828 66.654 67.357 0.018028 50 34 2 0 0 0 0.64035 1 36748 36748 22.453 0 1 5150300 2976 14642 1988 2032 3409 3409 -0.007616001312385379 APWMEQEGSEY 11 Oxidation (M) _APWM(Oxidation (M))EQEGSEY_ APWM(1)EQEGSEY APWM(42)EQEGSEY 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.765869140625 2 671.766442 1341.51833 -0.63895 -0.00042922 0.38579 0.00025916 -0.25316 -0.00017006 671.766676115116 41.129 0.23605 41.129 41.045 41.281 0 28 11 3 0 0 0 0.10451 1 22155 22155 41.956 26.108 1 5050800 2977 10306 1989 2033 3410 3410 1680 -0.13876645301070312 APWMWACY 8 Unmodified _APWMWACY_ 0 0 0 REV__ENST00000264110.6_1_2:175986236-175994890:-|nuORF REV__ENST00000264110.6_1_2:175986236-175994890:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2799072265625 2 514.211866 1026.40918 -0.16018 -8.2368E-05 -0.31549 -0.00016223 -0.47567 -0.0002446 514.2103155332236 29.344 0.12802 29.344 29.242 29.37 0 7 5 2 0 0 0 8.7369 1 15206 15206 6.3541 3.7766 1 311560 + 2978 25059 1990 2034 3411 3411 -0.10296857943603754 APWPIGVTM 9 Unmodified _APWPIGVTM_ 0 0 0 ENSG00000165630|ENST00000378572|PRPF18;nc|ENSG00000165630|Q99633-2|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2550048828125 2 486.254588 970.494624 1.1028 0.00053624 -2.1242 -0.0010329 -1.0214 -0.00049664 486.25318853557275 91.67 0.37818 85.494 85.27 85.648 -6.1757 25 20 2 0 0 0 0.095049 1 60641 60641 34.187 14.748 1 8990200 2979 7364 1991 2035 3412 3412 0.008196305137289528 APWPIGVTM 9 Oxidation (M) _APWPIGVTM(Oxidation (M))_ APWPIGVTM(1) APWPIGVTM(60) 0 0 1 ENSG00000165630|ENST00000378572|PRPF18;nc|ENSG00000165630|Q99633-2|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MSMS AL20221201_MKP_PDAC_01 4 494.2520446777344 2 494.252046 986.489538 NaN NaN NaN NaN NaN NaN NaN 73.692 1 67.516 67.016 68.016 -6.1757 0 0 0 0.045101 1 48185 48185 59.795 33.454 1 2980 7364 1991 2036 3413 3413 1270 -0.004246733488798782 APWPLKLGF 9 Unmodified _APWPLKLGF_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2894897460938 2 514.80002 1027.58549 0.97587 0.00050238 -0.57004 -0.00029346 0.40583 0.00020892 514.7990055133173 57.71 0.16006 57.644 57.554 57.714 -0.066036 11 7 2 0 0 0 0.17666 1 31379 31379 19.439 4.6007 1 1184500 2981 1694 1992 2037 3414 3414 0.07279842553521121 APWQERSTM 9 Oxidation (M) _APWQERSTM(Oxidation (M))_ APWQERSTM(1) APWQERSTM(46) 0 0 1 ENST00000528475.1_1_8:144644520-144645071:+|nuORF;ENST00000524846.5_1_8:144644315-144645071:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD ENST00000528475.1_1_8:144644520-144645071:+|nuORF ENST00000528475.1_1_8:144644520-144645071:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2560424804688 2 561.255848 1120.49714 -0.032274 -1.8114E-05 1.3398 0.00075197 1.3075 0.00073385 561.2565503741754 23.24 0.35212 23.24 23.015 23.367 0 56 17 4 0 0 0 0.047788 1 11862 11862 45.7 22.963 1 2963500 2982 2212 1993 2038 3415 3415 380 -0.05828565819297182 APWQERSTM 9 Oxidation (M) _APWQERSTM(Oxidation (M))_ APWQERSTM(1) APWQERSTM(56) 0 0 1 ENST00000528475.1_1_8:144644520-144645071:+|nuORF;ENST00000524846.5_1_8:144644315-144645071:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD ENST00000528475.1_1_8:144644520-144645071:+|nuORF ENST00000528475.1_1_8:144644520-144645071:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.3213500976562 2 561.255848 1120.49714 0.20238 0.00011359 -0.88895 -0.00049893 -0.68657 -0.00038534 561.2552962600521 25.912 0.30803 22.961 22.822 23.13 -2.9511 34 20 2 0 0 0 0.048075 1 14280 14280 56.177 27.095 1 11945000 2983 2212 1993 2038 3416 3416 380 -0.05828565819297182 APWQERSTM 9 Unmodified _APWQERSTM_ 0 0 0 ENST00000528475.1_1_8:144644520-144645071:+|nuORF;ENST00000524846.5_1_8:144644315-144645071:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD ENST00000528475.1_1_8:144644520-144645071:+|nuORF ENST00000528475.1_1_8:144644520-144645071:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2581787109375 2 553.258391 1104.50223 1.2444 0.00068849 -0.0028174 -1.5587E-06 1.2416 0.00068693 553.2586091860138 36.053 0.52061 31.86 31.598 32.118 -4.1928 74 31 3 0 0 0 0.0089732 2 20899 20899;21025 86.332 41.925 1 27265000 2984 2212 1993 2039 3417;3418 3417 -0.04584261956665614 APWQERSTMSL 11 Unmodified _APWQERSTMSL_ 0 0 0 ENST00000528475.1_1_8:144644520-144645071:+|nuORF;ENST00000524846.5_1_8:144644315-144645071:+|nuORF;ENST00000531184.5_1_8:144643499-144645071:+|nuORF;ENSG00000104518|ENST00000262580|GSDMD ENST00000528475.1_1_8:144644520-144645071:+|nuORF ENST00000528475.1_1_8:144644520-144645071:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.3148803710938 2 653.316437 1304.61832 NaN NaN NaN NaN NaN NaN NaN 35.584 1 35.362 34.862 35.862 -0.2224 0 0 0 0.92234 1 18639 18639 6.2058 3.2105 1 2985 2212 1994 2040 3419 3419 -0.021803631766033504 APWQLLHVY 9 Unmodified _APWQLLHVY_ 0 0 0 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8045654296875 2 563.805834 1125.59712 0.54873 0.00030938 -0.95535 -0.00053863 -0.40662 -0.00022925 563.8053134550105 76.156 0.48868 76.204 75.909 76.397 0.047943 41 20 3 0 0 0 0.011671 1 42019 42019 97.075 73.926 1 11301000 2986 547 1995 2041 3420 3420 0.03934039576847681 APWRGLSDEL 10 Unmodified _APWRGLSDEL_ 0 0 0 REV__ENST00000304414.11_1_16:18810104-18812862:-|nuORF REV__ENST00000304414.11_1_16:18810104-18812862:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.292236328125 2 572.293288 1142.57202 NaN NaN NaN NaN NaN NaN NaN 76.033 1 75.554 75.054 76.054 -0.47945 0 0 0 0.66657 1 41624 41624 18.146 1.9972 1 + 2987 25358 1996 2042 3421 3421 0.006439399836381199 APWRRPCASCR 11 Unmodified _APWRRPCASCR_ 0 0 0 ENST00000416074.6_1_3:9971735-9974750:+|nuORF ENST00000416074.6_1_3:9971735-9974750:+|nuORF ENST00000416074.6_1_3:9971735-9974750:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8828125 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 38.523 1 38.236 37.736 38.736 -0.28687 0 0 0 0.94144 1 20281 20281 0.50596 0 1 2988 13036 1997 2043 3422 3422 -0.015383377949774513 APWRWRWRRWR 11 Unmodified _APWRWRWRRWR_ 0 0 0 ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 856.4680786132812 2 856.468901 1710.92325 NaN NaN NaN NaN NaN NaN NaN 89.337 1 89.337 88.837 89.837 0 0 0 0 0.9435 1 49433 49433 0 0 1 2989 11159 1998 2044 3423 3423 0.09622458593071315 APWVLSAAA 9 Unmodified _APWVLSAAA_ 0 0 0 nc|ENSG00000142166|P17181-2|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1 nc|ENSG00000142166|P17181-2|IFNAR1 nc|ENSG00000142166|P17181-2|IFNAR1 MSMS AL20221201_MKP_PDAC_01 4 443.3884582519531 2 443.245078 884.475603 NaN NaN NaN NaN NaN NaN NaN 106.26 1 100.09 99.588 100.59 -6.1757 0 0 0 0.84564 1 71138 71138 2.0598 0.21551 1 2990 5393 1999 2045 3424 3424 0.028744172143092328 APYAASRLL 9 Unmodified _APYAASRLL_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2786254882812 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 45.989 1 45.665 45.165 46.165 -0.32425 0 0 0 0.15231 1 24597 24597 36.506 11.107 1 2991 6389 2000 2046 3425 3425 0.05741777651417124 APYAPLAVRF 10 Unmodified _APYAPLAVRF_ 0 0 0 REV__nc|ENSG00000132692|Q96GW7-2|BCAN REV__nc|ENSG00000132692|Q96GW7-2|BCAN MSMS AL20221201_MKP_PDAC_01 4 368.878662109375 3 368.878198 1103.61277 NaN NaN NaN NaN NaN NaN NaN 80.165 1 73.99 73.49 74.49 -6.1757 0 0 0 0.68184 1 52585 52585 17.443 6.6431 1 + 2992 19874 2001 2047 3426 3426 0.06510326093894037 APYDDLGKVF 10 Unmodified _APYDDLGKVF_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7849731445312 2 562.784764 1123.55498 0.22353 0.0001258 0.45048 0.00025353 0.67402 0.00037933 562.7851262606024 61.879 0.33704 61.879 61.707 62.044 0 37 14 3 0 0 0 0.021614 1 34467 34467 74.2 49.209 1 7591900 2993 1584 2002 2048 3427 3427 -0.0018598062217733968 APYDDLGKVF 10 Unmodified _APYDDLGKVF_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7852172851562 2 562.784764 1123.55498 0.85364 0.00048041 0.24693 0.00013897 1.1006 0.00061938 562.7850085570304 62.41 0.47527 61.923 61.768 62.243 -0.48764 52 22 3 0 0 0 0.027278 1 33976 33976 69.338 46.68 1 9101300 2994 1584 2002 2048 3428 3428 -0.0018598062217733968 APYDDLGKVF 10 Unmodified _APYDDLGKVF_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7866821289062 2 562.784764 1123.55498 1.0923 0.0006147 -0.43695 -0.00024591 0.6553 0.00036879 562.7847215204608 68.572 0.89713 62.397 62.046 62.943 -6.1757 81 51 2 0 0 0 0.014503 3 44876 44744;44876;44998 80.676 51.594 1 24673000 2995 1584 2002 2048 3429;3430;3431 3430 -0.0018598062217733968 APYDENWFY 9 Unmodified _APYDENWFY_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7511596679688 2 602.750921 1203.48729 0.11554 6.9643E-05 0.02709 1.6329E-05 0.14263 8.5972E-05 602.7508586176891 74.602 0.45895 74.602 74.388 74.847 0 71 20 5 0 0 0 0.016184 2 41530 41427;41530 67.344 45.597 1 15155000 2996 2310 2003 2049 3432;3433 3433 -0.10631430553007704 APYDENWFY 9 Unmodified _APYDENWFY_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7521362304688 2 602.750921 1203.48729 0.73311 0.00044188 -1.0987 -0.00066225 -0.3656 -0.00022037 602.7501271362123 75.142 0.41132 74.665 74.453 74.864 -0.47714 60 18 4 0 0 0 0.070838 2 41060 41060;41167 39.957 24.11 1 21363000 2997 2310 2003 2049 3434;3435 3434 -0.10631430553007704 APYDENWFY 9 Unmodified _APYDENWFY_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.752197265625 2 602.750921 1203.48729 0.14824 8.9349E-05 0.61606 0.00037133 0.76429 0.00046068 602.7512043406126 74.592 0.3121 74.638 74.501 74.813 0.045959 35 13 3 0 0 0 0.070838 1 41109 41109 39.957 24.11 1 2904300 2998 2310 2003 2049 3436 3436 -0.10631430553007704 APYDENWFY 9 Unmodified _APYDENWFY_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7510375976562 2 602.750921 1203.48729 -0.044862 -2.704E-05 0.68915 0.00041539 0.64429 0.00038835 602.751250744932 82.546 0.72474 76.37 76.044 76.768 -6.1757 135 40 6 0 0 0 0.016184 3 54201 54078;54201;54333 67.344 45.597 1 322370000 2999 2310 2003 2049 3437;3438;3439 3438 -0.10631430553007704 APYERRAMEL 10 Unmodified _APYERRAMEL_ 0 0 0 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5457153320312 3 412.54489 1234.61284 0.059914 2.4717E-05 0.26468 0.00010919 0.3246 0.00013391 412.545237233697 31.339 0.24448 31.339 31.174 31.418 0 27 11 3 0 0 0 0.32533 1 16294 16294 25.997 3.2224 1 3880700 3000 4194 2004 2050 3440 3440 0.00491958031602735 APYERRAMEL 10 Unmodified _APYERRAMEL_ 0 0 0 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5454711914062 3 412.54489 1234.61284 1.1682 0.00048195 0.00023555 9.7177E-08 1.1685 0.00048205 412.544995406939 34.89 0.51003 30.795 30.565 31.075 -4.0951 96 29 4 0 0 0 0.11322 2 20221 20089;20221 44.392 10.17 1 135570000 3001 4194 2004 2050 3441;3442 3442 0.00491958031602735 APYERRAMEL 10 Unmodified _APYERRAMEL_ 0 0 0 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 ENSG00000130255|ENST00000347512|RPL36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8150634765625 2 618.313697 1234.61284 0.79464 0.00049134 0.22788 0.0001409 1.0225 0.00063224 618.3139611491292 34.885 0.37529 30.79 30.616 30.991 -4.0951 55 21 3 0 0 0 0.018486 2 20106 20106;20234 79.596 54.197 1 18716000 3002 4194 2004 2050 3443;3444 3443 0.00491958031602735 APYESDPDSR 10 Unmodified _APYESDPDSR_ 0 0 0 REV__ENST00000546676.1_1_12:50529254-50529473:-|nuORF REV__ENST00000546676.1_1_12:50529254-50529473:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4990234375 3 379.500004 1135.47818 0.023044 8.7452E-06 -1.7925 -0.00068024 -1.7694 -0.00067149 379.49923210962294 64.265 0.44778 64.265 64.071 64.519 0 51 19 4 0 0 0 0.65282 1 35808 35808 4.7159 1.6437 1 3984500 + 3003 28663 2005 2051 3445 3445 -0.08413823909313578 APYFGAEDY 9 Unmodified _APYFGAEDY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7190551757812 2 516.71909 1031.42363 0.58934 0.00030453 0.70518 0.00036438 1.2945 0.00066891 516.7191310321077 51.538 0.25234 51.538 51.369 51.622 0 20 11 2 0 0 0 0.027803 1 28449 28449 56.541 37.102 1 1877600 3004 9795 2006 2052 3446 3446 -0.09082790990078138 APYFGAEDY 9 Unmodified _APYFGAEDY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.7265625 1 1032.4309 1031.42363 -0.062089 -6.4102E-05 3.336 0.0034441 3.2739 0.00338 1032.4355981399247 51.527 0.22909 51.527 51.393 51.622 0 19 10 2 0 0 0 0.019477 1 28422 28422 88.904 63.504 1 4786800 3005 9795 2006 2052 3447 3447 -0.09082790990078138 APYFGAEDY 9 Unmodified _APYFGAEDY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.720458984375 2 516.71909 1031.42363 0.96349 0.00049786 0.071224 3.6803E-05 1.0347 0.00053466 516.719105225615 59.342 0.35869 53.229 53.095 53.454 -6.1125 26 19 2 0 0 0 0.045537 1 38167 38167 46.921 35.281 1 14123000 3006 9795 2006 2052 3448 3448 -0.09082790990078138 APYFRLLRL 9 Unmodified _APYFRLLRL_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;ENST00000470757.5_1_3:10106087-10114602:+|nuORF nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5695495605469 3 383.569476 1147.6866 0.53797 0.00020635 -0.00045185 -1.7331E-07 0.53752 0.00020618 383.569521778069 68.578 0.22246 68.604 68.479 68.701 0.025154 15 10 2 0 0 0 0.14602 1 37679 37679 20.415 12.806 1 1851100 3007 5618 2007 2053 3449 3449 0.11866294256242327 APYGKVKLQFK 11 Unmodified _APYGKVKLQFK_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9239501953125 3 426.923807 1277.74959 0.40259 0.00017188 -0.30954 -0.00013215 0.093049 3.9725E-05 426.9235672283014 59.26 0.4073 59.207 58.992 59.399 -0.053062 59 20 4 0 0 0 0.66568 1 32335 32335 7.4771 2.4295 1 33097000 + 3008 21226 2008 2054 3450 3450 0.12182815253572699 APYIAYLTRC 10 Unmodified _APYIAYLTRC_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8709716796875 3 390.870715 1169.59032 1.0767 0.00042086 -2.5953 -0.0010144 -1.5186 -0.00059359 390.8698048821738 49.939 0.30066 44.399 44.218 44.518 -5.5391 26 18 2 0 0 0 0.67046 1 31245 31245 6.1918 0.40842 1 16392000 3009 7311 2009 2055 3451 3451 0.012303586339612593 APYITRQYR 9 Unmodified _APYITRQYR_ 0 0 0 nc|ENSG00000116731|Q13029-3|PRDM2;ENSG00000116731|ENST00000311066|PRDM2 nc|ENSG00000116731|Q13029-3|PRDM2 nc|ENSG00000116731|Q13029-3|PRDM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1974792480469 3 389.88049 1166.61964 -0.63818 -0.00024881 -0.74516 -0.00029052 -1.3833 -0.00053934 389.8807392046914 14.854 0.2382 14.854 14.708 14.946 0 95 65 2 0 0 0 0.59218 1 7140 7140 0.96228 0.18574 1 1854300 3010 3247 2010 2056 3452 3452 0.04299638974453046 APYKSVTSL 9 Unmodified _APYKSVTSL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.A745V|1|0.1|ENSG00000180263|chr12:95209050-95209050|G/A|missense_variant nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2690734863281 2 483.26875 964.522947 -0.3635 -0.00017567 0.91629 0.00044281 0.55279 0.00026715 483.269322173038 34.828 0.2052 34.828 34.695 34.9 0 17 10 2 0 0 0 0.029718 1 18371 18371 55.503 9.4818 1 2783000 3011 8890 2011 2057 3453 3453 0.03926651694678185 APYKSVTSL 9 Unmodified _APYKSVTSL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.A745V|1|0.1|ENSG00000180263|chr12:95209050-95209050|G/A|missense_variant nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MSMS AL20221201_MKP_PDAC_01 4 483.2699584960938 2 483.26875 964.522947 NaN NaN NaN NaN NaN NaN NaN 39.268 1 34.817 34.317 35.317 -4.4509 0 0 0 0.08368 1 23286 23286 47.594 7.1458 1 3012 8890 2011 2057 3454 3454 0.03926651694678185 APYKSVTSL 9 Unmodified _APYKSVTSL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.A745V|1|0.1|ENSG00000180263|chr12:95209050-95209050|G/A|missense_variant nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MSMS AL20221201_MKP_PDAC_01 4 483.2683410644531 2 483.26875 964.522947 NaN NaN NaN NaN NaN NaN NaN 39.472 1 35.021 34.521 35.521 -4.4509 0 0 0 0.076083 1 23428 23428 49.554 11.58 1 3013 8890 2011 2057 3455 3455 0.03926651694678185 APYKSVTSL 9 Unmodified _APYKSVTSL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.A745V|1|0.1|ENSG00000180263|chr12:95209050-95209050|G/A|missense_variant nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 483.26875 964.522947 0.17696 8.5519E-05 2.3797 0.00115 2.5566 0.0012355 483.2699386124821 34.735 0.18803 34.762 34.668 34.856 0.027401 -0.032688 0.0010028 NaN 55.503 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4496200 3014 8890 2011 2057 0.03926651694678185 APYLLRTLLYW 11 Unmodified _APYLLRTLLYW_ 0 0 0 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2903137207031 3 470.271096 1407.79146 0.0036946 1.7374E-06 1.9051 0.00089593 1.9088 0.00089767 470.606390614667 20.138 0.16426 20.148 20.024 20.189 0.010553 20 7 4 0 0 0 0.30565 1 10240 10240 2.2527 0.92309 1 1108100 3015 8962 2012 2058 3456 3456 0.10387370942135021 APYPLYPAEL 10 Unmodified _APYPLYPAEL_ 0 0 0 nc|ENSG00000157110|Q93062-3|RBPMS;ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2990112304688 2 567.297507 1132.58046 -0.084606 -4.7997E-05 0.36196 0.00020534 0.27736 0.00015734 567.2972294626505 76.952 0.39575 76.473 76.255 76.651 -0.47945 37 17 3 0 0 0 0.57332 1 42189 42189 12.532 4.6214 1 1295700 3016 16296 2013 2059 3457 3457 0.019474939002293468 APYPVCTVRY 10 Carbamidomethyl (C) _APYPVC(Carbamidomethyl (C))TVRY_ APYPVC(1)TVRY APYPVC(59)TVRY 0 1 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS AL20221201_MKP_PDAC_01 4 613.3058471679688 2 613.305341 1224.59613 NaN NaN NaN NaN NaN NaN NaN 49.517 1 44.121 43.621 44.621 -5.3961 0 0 0 0.042083 1 30945 30945 59.368 30.287 1 3017 9027 2014 2060 3458 3458 848 -0.007185428543607486 APYQFLTAF 9 Unmodified _APYQFLTAF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2703857421875 2 529.271293 1056.52803 0.35421 0.00018747 -0.3214 -0.00017011 0.032809 1.7365E-05 529.2710473534631 91.428 0.25268 90.934 90.803 91.056 -0.49457 22 11 3 0 0 0 0.54444 1 49960 49960 4.756 0.81161 1 679020 3018 8479 2015 2061 3459 3459 0.002029555572789832 APYQFLTAF 9 Unmodified _APYQFLTAF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.271728515625 2 529.271293 1056.52803 NaN NaN NaN NaN NaN NaN NaN 90.977 1 91.013 90.513 91.513 0.036499 0 0 0 0.20498 1 50603 50603 30.225 13.138 1 3019 8479 2015 2061 3460 3460 0.002029555572789832 APYQFLTAF 9 Unmodified _APYQFLTAF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.269775390625 2 529.271293 1056.52803 0.73014 0.00038644 0.092495 4.8955E-05 0.82264 0.0004354 529.2712862059955 99.563 0.26749 93.387 93.29 93.558 -6.1757 30 16 3 0 0 0 0.038285 1 66317 66317 50.855 33.913 1 67420000 3020 8479 2015 2061 3461 3461 0.002029555572789832 APYRERVEF 9 Unmodified _APYRERVEF_ 0 0 0 ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1 ENST00000524510.1_1_11:119547810-119558018:-|nuORF ENST00000524510.1_1_11:119547810-119558018:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8717346191406 3 389.536612 1165.58801 0.013418 5.2268E-06 -0.034808 -1.3559E-05 -0.02139 -8.3322E-06 389.5365091912624 31.515 0.25974 31.515 31.359 31.619 0 31 12 4 0 0 0 0.25681 1 16401 16401 18.373 9.9288 1 2882500 3021 2717 2016 2062 3462 3462 0.011836462205337739 APYRGRTSIL 10 Unmodified _APYRGRTSIL_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000480110.5_1_6:26444219-26444576:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5520935058594 3 378.552374 1132.63529 0.075676 2.8647E-05 0.4885 0.00018492 0.56418 0.00021357 378.5525814673535 28.974 0.18498 29.004 28.894 29.079 0.030104 16 7 3 0 0 0 0.47059 1 15095 15095 17.863 1.2973 1 4813800 3022 563;2829 2017 2063 3463 3463 0.0742792549153819 APYSFELIM 9 Unmodified _APYSFELIM_ 0 0 0 REV__ENSG00000117834|ENST00000438567|SLC5A9 REV__ENSG00000117834|ENST00000438567|SLC5A9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.25244140625 2 535.764986 1069.51542 1.0606 0.00056826 2.9011 0.0015543 3.9617 0.0021225 535.7660113929957 100.4 0.12003 94.223 94.171 94.291 -6.1757 12 7 2 0 0 0 0.17666 1 67091 67091 8.5933 0 1 31165000 + 3023 19125 2018 2064 3464 3464 -0.0165582389724932 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8698120117188 3 353.869703 1058.58728 -0.42409 -0.00015007 0.60729 0.0002149 0.1832 6.483E-05 353.87009224624245 20.206 0.25695 20.206 20.069 20.326 0 42 17 3 0 0 0 0.1685 1 10112 10112 26.268 3.5319 1 7084400 3024 9177 2019 2065 3465 3465 0.06032851571490028 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2811889648438 2 530.300916 1058.58728 NaN NaN NaN NaN NaN NaN NaN 20.202 1 20.202 19.702 20.702 0 0 0 0 0.47914 1 10153 10153 12.241 4.0851 1 3025 9177 2019 2065 3466 3466 0.06032851571490028 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.3017578125 2 530.300916 1058.58728 NaN NaN NaN NaN NaN NaN NaN 20.224 1 20.224 19.724 20.724 0 0 0 0 0.69506 1 10165 10165 9.3831 0.035688 1 3026 9177 2019 2065 3467 3467 0.06032851571490028 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3013305664062 2 530.300916 1058.58728 0.11401 6.0461E-05 0.31606 0.00016761 0.43007 0.00022807 530.301099843093 20.069 0.16187 20.077 20.004 20.166 0.0078487 13 7 2 0 0 0 0.18255 1 10233 10233 26.268 3.1197 1 597940 3027 9177 2019 2065 3468 3468 0.06032851571490028 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8703002929688 3 353.869703 1058.58728 1.2528 0.00044332 0.097519 3.4509E-05 1.3503 0.00047783 353.8697173431249 22.443 0.44464 19.665 19.427 19.872 -2.7784 83 24 4 0 0 0 0.05447 2 11983 11983;12092 33.445 4.1638 1 152650000 3028 9177 2019 2065 3469;3470 3469 0.06032851571490028 APYSRPKQL 9 Unmodified _APYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8025512695312 2 530.300916 1058.58728 0.55187 0.00029266 0.92827 0.00049226 1.4801 0.00078492 530.3014267618031 22.45 0.38192 19.672 19.462 19.844 -2.7784 53 20 4 0 0 0 0.0073703 2 12010 12010;12110 122.18 62.105 1 22011000 3029 9177 2019 2065 3471;3472 3471 0.06032851571490028 APYTFSFEML 10 Unmodified _APYTFSFEML_ 0 0 0 ENSG00000145198|ENST00000691901|VWA5B2 ENSG00000145198|ENST00000691901|VWA5B2 ENSG00000145198|ENST00000691901|VWA5B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2802124023438 2 603.281 1204.54745 -0.53151 -0.00032065 3.6291 0.0021894 3.0976 0.0018687 603.2831568652023 22.175 0.26468 22.175 22.019 22.283 0 21 13 2 0 0 0 0.70895 1 11233 11233 1.6526 0 1 484390 3030 5673 2020 2066 3473 3473 -0.04664456214118218 APYTRGSY 8 Unmodified _APYTRGSY_ 0 0 0 ENST00000476834.6_1_10:135196418-135204956:+|nuORF;ENST00000368535.2_1_10:135193041-135204956:+|nuORF;ENSG00000148832|ENST00000278060|PAOX ENST00000476834.6_1_10:135196418-135204956:+|nuORF ENST00000476834.6_1_10:135196418-135204956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7215576171875 2 457.721967 913.429381 -0.18776 -8.5943E-05 -1.2636 -0.00057839 -1.4514 -0.00066433 457.72177801420105 27.178 0.2865 27.178 27.033 27.32 0 20 13 2 0 0 0 0.6895 1 14012 14012 18.135 3.5533 1 2181600 3031 5965 2021 2067 3474 3474 -0.03079647687764009 APYTTGAPPL 10 Unmodified _APYTTGAPPL_ 0 0 0 REV__nc|ENSG00000100083|Q9UJY5-3|GGA1 REV__nc|ENSG00000100083|Q9UJY5-3|GGA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7342834472656 2 494.260925 986.507297 0.18359 9.0742E-05 -1.4472 -0.00071529 -1.2636 -0.00062455 494.26023230474163 76.572 0.38832 76.092 75.955 76.343 -0.47945 33 25 2 0 0 0 0.22667 1 42001 42001 15.847 1.0089 1 3122200 + 3032 18010 2022 2068 3475 3475 0.01350365177609092 APYVFETAA 9 Unmodified _APYVFETAA_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7428283691406 2 484.739825 967.465098 0.26905 0.00013042 2.3735 0.0011505 2.6425 0.0012809 484.74185989894835 61.6 0.38559 61.6 61.343 61.728 0 31 17 2 0 0 0 0.49272 1 34377 34377 7.9102 1.5561 1 2037900 + 3033 29885 2023 2069 3476 3476 -0.01993610230761078 APYWRWST 8 Unmodified _APYWRWST_ 0 0 0 ENST00000486845.1_1_6:33382534-33383872:+|nuORF ENST00000486845.1_1_6:33382534-33383872:+|nuORF ENST00000486845.1_1_6:33382534-33383872:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.5609741210938 3 356.175015 1065.50321 1.0812 0.00038509 -1.8121 -0.00064543 -0.73093 -0.00026034 356.174089648509 22.622 0.28072 19.844 19.722 20.002 -2.7784 27 20 2 0 0 0 8.7369 1 12200 12200 1.8442 0 1 3005800 3034 14190 2024 2070 3477 3477 -0.026916795254237513 AQAPFGGF 8 Unmodified _AQAPFGGF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.69580078125 2 397.695221 793.375889 1.1784 0.00046863 0.23742 9.4421E-05 1.4158 0.00056305 397.6952389701684 71.929 0.29989 65.754 65.619 65.919 -6.1757 28 16 2 0 0 0 0.65867 1 47042 47042 20.871 6.2895 1 28215000 3035 9235 2025 2071 3478 3478 -0.029064003996154497 AQCMCHGDRM 10 Unmodified _AQCMCHGDRM_ 0 0 0 REV__ENST00000467378.1_1_X:47106498-47106892:+|nuORF REV__ENST00000467378.1_1_X:47106498-47106892:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.214599609375 2 576.214288 1150.41402 0.94671 0.00054551 1.6846 0.00097072 2.6314 0.0015162 576.2150527483485 64.94 0.38231 58.765 58.574 58.956 -6.1757 35 20 3 0 0 0 0.67459 1 42083 42083 5.7319 0.97584 1 15918000 + 3036 27432 2026 2072 3479 3479 -0.1551666513478267 AQDIGIWFHIL 11 Unmodified _AQDIGIWFHIL_ 0 0 0 ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7 ENSG00000146205|ENST00000674324|ANO7 ENSG00000146205|ENST00000674324|ANO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.8580322265625 2 656.856055 1311.69756 -0.024978 -1.6407E-05 1.9001 0.0012481 1.8752 0.0012317 656.8572172800242 97.697 0.29066 97.697 97.552 97.843 0 24 10 3 0 0 0 0.70069 1 53993 53993 4.1895 1.4543 1 1055100 3037 5761 2027 2073 3480 3480 0.054176518398662665 AQEPFPLDCCR 11 Unmodified _AQEPFPLDCCR_ 0 0 0 REV__nc|ENSG00000143369|Q16610-2|ECM1 REV__nc|ENSG00000143369|Q16610-2|ECM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2480773925781 3 426.858369 1277.55328 -0.56952 -0.0002431 -0.087282 -3.7257E-05 -0.6568 -0.00028036 426.8582726046157 15.871 0.14234 15.871 15.779 15.922 0 41 33 2 0 0 0 0.30584 1 7704 7704 1.3296 0.55311 1 426550 + 3038 20629 2028 2074 3481 3481 -0.0743968097413017 AQEYCVHPQ 9 Unmodified _AQEYCVHPQ_ 0 0 0 REV__ENSG00000160994|ENST00000292574|CCDC105 REV__ENSG00000160994|ENST00000292574|CCDC105 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7355346679688 2 537.737291 1073.46003 -0.054195 -2.9143E-05 -1.5847 -0.00085216 -1.6389 -0.00088131 537.7364819090004 76.445 0.34229 75.966 75.835 76.177 -0.47945 35 22 2 0 0 0 0.23158 1 41857 41857 20.454 4.6064 1 4776600 + 3039 21578 2029 2075 3482 3482 -0.0737623736504247 AQFEHTILL 9 Unmodified _AQFEHTILL_ 0 0 0 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2959594726562 2 536.295299 1070.57605 -0.36712 -0.00019688 0.30719 0.00016474 -0.059928 -3.2139E-05 536.2956511324384 61.272 0.32833 60.783 60.635 60.963 -0.48932 36 15 3 0 0 0 0.020973 2 33332 33332;33433 62.573 24.599 1 11780000 3040 2762 2030 2076 3483;3484 3483 0.04358029477339187 AQFHDLMQKW 10 Unmodified _AQFHDLMQKW_ 0 0 0 REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8812255859375 3 435.213252 1302.61793 0.53718 0.00023379 1.5005 0.00065305 2.0377 0.00088684 435.2140601385969 38.593 0.18716 38.593 38.494 38.682 0 24 8 4 0 0 0 0.23745 1 20605 20605 1.4551 0.82829 1 1199000 + 3041 20559 2031 2077 3485 3485 -0.0212773810580984 AQFLFGHYY 9 Unmodified _AQFLFGHYY_ 0 0 0 ENST00000442692.2_1_11:68845982-68853340:+|nuORF;ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2 ENST00000442692.2_1_11:68845982-68853340:+|nuORF ENST00000442692.2_1_11:68845982-68853340:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2753295898438 2 573.274367 1144.53418 -0.24056 -0.00013791 -0.62619 -0.00035898 -0.86675 -0.00049689 573.2741518812019 26.551 0.18776 26.551 26.448 26.636 0 20 8 3 0 0 0 0.48152 1 13601 13601 8.5933 0.68312 1 2502900 3042 6847 2032 2078 3486 3486 -0.03230526211200413 AQFLYSYEY 9 Unmodified _AQFLYSYEY_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5156860351562 3 395.181723 1182.52334 -0.49167 -0.0001943 2.1832 0.00086277 1.6916 0.00066848 395.1825435775019 20.081 0.11347 20.081 20.029 20.143 0 18 11 2 0 0 0 0.59116 1 10080 10080 1.9064 1.1298 1 1122600 3043 358 2033 2079 3487 3487 -0.06061973376131391 AQFLYSYEY 9 Unmodified _AQFLYSYEY_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.181723 1182.52334 -0.41053 -0.00016223 1.1634 0.00045976 0.75288 0.00029753 395.18201708455 19.951 0.1116 19.979 19.912 20.024 0.028357 -0.051195 -0.000743 NaN 1.9064 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 631480 3044 358 2033 2079 -0.06061973376131391 AQFQEPTP 8 Unmodified _AQFQEPTP_ 0 0 0 REV__ENST00000494557.1_1_3:12632295-12633310:-|nuORF REV__ENST00000494557.1_1_3:12632295-12633310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2218933105469 2 459.2218 916.429047 0.30056 0.00013802 -1.2032 -0.00055255 -0.90267 -0.00041452 459.2214681013988 71.714 0.33522 71.714 71.505 71.84 0 26 14 3 0 0 0 0.55032 1 39935 39935 30.225 3.3412 1 1097000 + 3045 19831 2034 2080 3488 3488 -0.03251067407620667 AQFVAAAN 8 Unmodified _AQFVAAAN_ 0 0 0 REV__nc|ENSG00000120729|Q9UBF9-2|MYOT REV__nc|ENSG00000120729|Q9UBF9-2|MYOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2063598632812 2 396.205953 790.397353 1.3876 0.00054976 -0.67167 -0.00026612 0.71591 0.00028365 396.20559525216925 35.77 0.48824 31.577 31.382 31.87 -4.1928 50 30 2 0 0 0 0.63229 1 20819 20819 23.148 0 1 22444000 + 3046 19259 2035 2081 3489 3489 -0.006230153709225306 AQFVEKSSSH 10 Unmodified _AQFVEKSSSH_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.8182983398438 2 560.275095 1118.53564 0.93262 0.00052252 -1.6458 -0.00092208 -0.71314 -0.00039955 560.2743648476195 65.947 0.13922 59.771 59.723 59.862 -6.1757 11 7 2 0 0 0 0.22891 1 42855 42855 10.8 8.4968 1 18256000 + 3047 23742 2036 2082 3490 3490 -0.01888936913087491 AQGSSRWRL 9 Unmodified _AQGSSRWRL_ 0 0 0 REV__nc|ENSG00000291110|Q309B1-2|TRIM16L REV__nc|ENSG00000291110|Q309B1-2|TRIM16L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.19384765625 3 354.193068 1059.55738 -0.063052 -2.2332E-05 1.4129 0.00050045 1.3499 0.00047812 354.1935159123316 15.989 0.85343 15.994 15.662 16.515 0.0050564 116 70 3 0 0 0 0.52844 1 8089 8089 5.7319 1.5423 1 2118100 + 3048 30037 2037 2083 3491 3491 0.029979126261423517 AQHEPTLPTL 10 Unmodified _AQHEPTLPTL_ 0 0 0 nc|ENSG00000163462|Q7Z4K8-4|TRIM46;nc|ENSG00000163462|Q7Z4K8-3|TRIM46;nc|ENSG00000163462|Q7Z4K8-2|TRIM46;ENST00000468878.1_1_1:155147264-155152278:+|nuORF;nc|ENSG00000163462|Q7Z4K8-5|TRIM46;ENSG00000163462|ENST00000334634|TRIM46 nc|ENSG00000163462|Q7Z4K8-4|TRIM46 nc|ENSG00000163462|Q7Z4K8-4|TRIM46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7940063476562 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 75.606 1 75.128 74.628 75.628 -0.47714 0 0 0 0.89532 1 41388 41388 8.1555 1.4324 1 3049 6995 2038 2084 3492 3492 0.028208241263882883 AQHLSLPLRY 10 Unmodified _AQHLSLPLRY_ 0 0 0 ENSG00000008438|ENST00000008938|PGLYRP1 ENSG00000008438|ENST00000008938|PGLYRP1 ENSG00000008438|ENST00000008938|PGLYRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8973693847656 3 399.89614 1196.66659 0.2275 9.0976E-05 0.61608 0.00024637 0.84358 0.00033734 399.8962919441882 40.248 0.18845 40.253 40.149 40.337 0.0050545 15 8 2 0 0 0 0.65023 1 21445 21445 8.4443 0.28878 1 2973000 3050 391 2039 2085 3493 3493 0.07612498525600131 AQIMESQYG 9 Unmodified _AQIMESQYG_ 0 0 0 ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7 ENST00000496637.6_1_10:28342996-28348461:-|nuORF ENST00000496637.6_1_10:28342996-28348461:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.732177734375 2 513.731674 1025.4488 0.53596 0.00027534 -3.5973 -0.0018481 -3.0614 -0.0015727 513.730336031813 53.667 0.75062 53.667 53.281 54.032 0 70 34 3 0 0 0 0.39863 1 29852 29852 12.532 3.1484 1 18826000 3051 6049 2040 2086 3494 3494 -0.06291059459158532 AQIRQLEKQMY 11 Unmodified _AQIRQLEKQMY_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENST00000580395.1_1_17:26945751-26946955:-|nuORF ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MSMS AL20221201_MKP_PDAC_01 4 469.9194641113281 3 469.918616 1406.73402 NaN NaN NaN NaN NaN NaN NaN 55.73 1 49.809 49.309 50.309 -5.9211 0 0 0 0.8958 1 35504 35504 7.4771 0.85361 1 3052 359 2041 2087 3495 3495 0.046921606742444055 AQKAGMAC 8 Unmodified _AQKAGMAC_ 0 0 0 ENST00000436103.1_22:24376175-24376421:-|nuORF ENST00000436103.1_22:24376175-24376421:-|nuORF ENST00000436103.1_22:24376175-24376421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.1820983886719 2 390.180566 778.346579 0.26259 0.00010246 -0.024161 -9.427E-06 0.23842 9.3029E-05 390.18188247383773 69.585 0.39556 69.616 69.431 69.826 0.030914 55 21 4 0 0 0 0.80975 1 38209 38209 0.79363 0.19213 1 15844000 3053 13329 2042 2088 3496 3496 -0.05146004011783134 AQKFADTHSMP 11 Unmodified _AQKFADTHSMP_ 0 0 0 ENSG00000172007|ENST00000305626|RAB33B ENSG00000172007|ENST00000305626|RAB33B ENSG00000172007|ENST00000305626|RAB33B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5286254882812 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 18.972 1 18.972 18.472 19.472 0 0 0 0 0.93933 1 9464 9464 1.2148 0.14337 1 3054 8172 2043 2089 3497 3497 -0.04096321239421741 AQKKQLEES 9 Unmodified _AQKKQLEES_ 0 0 0 nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1951599121094 3 354.192623 1059.55604 NaN NaN NaN NaN NaN NaN NaN 15.623 1 15.629 15.129 16.129 0.0057774 0 0 0 0.85359 1 7794 7794 1.0715 0 1 3055 9282 2044 2090 3498 3498 0.028642337467317702 AQKKQLEES 9 Unmodified _AQKKQLEES_ 0 0 0 nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL MSMS AL20221201_MKP_PDAC_01 4 354.1918029785156 3 354.192623 1059.55604 NaN NaN NaN NaN NaN NaN NaN 16.511 1 13.954 13.454 14.454 -2.557 0 0 0 0.84385 1 8558 8558 2.2828 0 1 3056 9282 2044 2090 3499 3499 0.028642337467317702 AQKKQLEES 9 Unmodified _AQKKQLEES_ 0 0 0 nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL nc|ENSG00000184672|Q86SE5-2|RALYL MSMS AL20221201_MKP_PDAC_01 4 354.1928100585938 3 354.192623 1059.55604 NaN NaN NaN NaN NaN NaN NaN 16.694 1 14.138 13.638 14.638 -2.557 0 0 0 0.84385 1 8666 8666 2.2828 0 1 3057 9282 2044 2090 3500 3500 0.028642337467317702 AQKKRHWES 9 Unmodified _AQKKRHWES_ 0 0 0 REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5442810058594 3 390.54399 1168.61014 0.0020709 8.0876E-07 0.18406 7.1884E-05 0.18613 7.2693E-05 390.54406714918633 28.854 0.6482 28.884 28.651 29.299 0.030106 90 26 4 0 0 0 0.35911 2 14962 14962;15164 14.405 6.1189 1 107460000 + 3058 22440 2045 2091 3501;3502 3501 0.03257870688935327 AQKKRHWES 9 Unmodified _AQKKRHWES_ 0 0 0 REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF REV__ENST00000573989.1_1_17:7834648-7835228:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 390.54399 1168.61014 0.0020709 8.0876E-07 0.18406 7.1884E-05 0.18613 7.2693E-05 390.54406714918633 28.854 0.6482 28.884 28.651 29.299 0.030106 0 0 NaN 14.405 90 26 4 NaN NaN NaN NaN 0 NaN NaN 0 107460000 + 3059 22440 2045 2091 0.03257870688935327 AQKLSEIHK 9 Unmodified _AQKLSEIHK_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3052368164062 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 90.268 1 90.31 89.81 90.81 0.042175 0 0 0 0.83329 1 50213 50213 3.5965 0 1 3060 8441 2046 2092 3503 3503 0.07364834225882078 AQKTASYYSP 10 Unmodified _AQKTASYYSP_ 0 0 0 ENSG00000179914|ENST00000326245|ITLN1 ENSG00000179914|ENST00000326245|ITLN1 ENSG00000179914|ENST00000326245|ITLN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7479858398438 2 558.272021 1114.52949 0.23158 0.00012929 4.442 0.0024798 4.6736 0.0026091 558.2751269544891 31.874 0.24208 31.744 31.675 31.917 -0.12915 17 9 2 0 0 0 0.22811 1 16606 16606 14.838 4.0143 1 1549700 3061 8866 2047 2093 3504 3504 -0.023194551446067635 AQLDIEEPF 9 Unmodified _AQLDIEEPF_ 0 0 0 REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1 REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2610473632812 2 531.261122 1060.50769 0.35028 0.00018609 0.06607 3.51E-05 0.41635 0.00022119 531.2606828154485 89.078 0.22258 89.078 88.901 89.123 0 17 11 2 0 0 0 0.5029 1 49279 49279 7.2892 0 1 338950 + 3062 22343 2048 2094 3505 3505 -0.020142598931897737 AQLENPAAV 9 Unmodified _AQLENPAAV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7433776855469 2 456.742899 911.471246 0.71772 0.00032781 -0.2475 -0.00011304 0.47022 0.00021477 456.7427893439403 36.969 0.4054 36.969 36.754 37.159 0 50 19 3 0 0 0 0.014417 2 19596 19596;19710 69.105 22.235 1 14021000 3063 6889 2049 2095 3506;3507 3506 0.011969080007588673 AQLENPAAV 9 Unmodified _AQLENPAAV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.477783203125 1 912.478522 911.471246 0.28299 0.00025822 -0.3186 -0.00029071 -0.035608 -3.2492E-05 912.4781456515551 36.987 0.29939 36.987 36.818 37.117 0 31 14 3 0 0 0 0.0090524 3 19602 19602;19651;19707 85.642 19.185 1 6055900 3064 6889 2049 2095 3508;3509;3510 3508 0.011969080007588673 AQLENPAAV 9 Unmodified _AQLENPAAV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7438049316406 2 456.742899 911.471246 0.72106 0.00032934 1.7593 0.00080355 2.4804 0.0011329 456.743604459889 43.581 0.74379 38.816 38.607 39.351 -4.7648 107 47 3 0 0 0 0.023481 2 26537 26404;26537 60.074 13.454 1 51916000 3065 6889 2049 2095 3511;3512 3512 0.011969080007588673 AQLENPAAV 9 Unmodified _AQLENPAAV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.4791259765625 1 912.478522 911.471246 0.26557 0.00024233 0.90821 0.00082872 1.1738 0.001071 912.4793310381197 43.58 0.38409 38.815 38.65 39.034 -4.7648 51 23 3 0 0 0 0.0044708 2 26422 26422;26548 118.89 33.253 1 12930000 3066 6889 2049 2095 3513;3514 3513 0.011969080007588673 AQLEQHKRRY 10 Unmodified _AQLEQHKRRY_ 0 0 0 REV__ENSG00000171094|ENST00000389048|ALK REV__ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.5783386230469 3 443.577582 1327.71092 0.37988 0.00016851 1.2138 0.00053843 1.5937 0.00070694 443.57828970939704 17.664 0.085884 17.669 17.621 17.707 0.0050564 8 5 2 0 0 0 0.7191 1 8924 8924 0.77653 0.078866 1 637490 + 3067 22531 2050 2096 3515 3515 0.06016902671808566 AQLEQHKRRY 10 Unmodified _AQLEQHKRRY_ 0 0 0 REV__ENSG00000171094|ENST00000389048|ALK REV__ENSG00000171094|ENST00000389048|ALK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 443.577582 1327.71092 -0.32086 -0.00014233 2.3461 0.0010407 2.0252 0.00089833 443.57852957272513 17.602 0.11239 17.602 17.534 17.647 0 -0.062555 0.00036001 NaN 0.77653 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 881210 + 3068 22531 2050 2096 0.06016902671808566 AQLEQHKRRY 10 Unmodified _AQLEQHKRRY_ 0 0 0 REV__ENSG00000171094|ENST00000389048|ALK REV__ENSG00000171094|ENST00000389048|ALK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 443.577582 1327.71092 0.37988 0.00016851 1.2138 0.00053843 1.5937 0.00070694 443.57828970939704 17.664 0.085884 17.669 17.621 17.707 0.0050564 0.004553 -0.0011467 NaN 0.77653 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 637490 + 3069 22531 2050 2096 0.06016902671808566 AQLESQEPGF 10 Unmodified _AQLESQEPGF_ 0 0 0 ENST00000530142.5_1_8:145581065-145582036:-|nuORF ENST00000530142.5_1_8:145581065-145582036:-|nuORF ENST00000530142.5_1_8:145581065-145582036:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.311279296875 2 553.261653 1104.50875 NaN NaN NaN NaN NaN NaN NaN 87.026 1 86.522 86.022 87.022 -0.50318 0 0 0 0.96627 1 47610 47610 4.3292 0.38484 1 3070 14887 2051 2097 3516 3516 -0.03932045524265959 AQLMLLKFL 9 Unmodified _AQLMLLKFL_ 0 0 0 ENST00000563094.5_1_16:69200987-69201092:+|nuORF;ENST00000562237.5_1_16:69200987-69202772:+|nuORF ENST00000563094.5_1_16:69200987-69201092:+|nuORF ENST00000563094.5_1_16:69200987-69201092:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.2322998046875 2 538.830463 1075.64637 0.22187 0.00011955 -1.5531 -0.00083685 -1.3312 -0.0007173 538.8296805253276 99.828 0.21812 93.652 93.574 93.792 -6.1757 39 16 3 0 0 0 0.19613 1 66538 66538 12.532 0 1 171010000 3071 15339 2052 2098 3517 3517 0.11157611541443657 AQLQVQKTF 9 Unmodified _AQLQVQKTF_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.322265625 2 531.800749 1061.58694 0.85092 0.00045252 1.1451 0.00060894 1.996 0.0010615 531.8014273396005 59.653 0.57654 53.538 53.219 53.796 -6.1147 85 32 4 0 0 0 0.19205 1 38422 38422 10.074 0 1 310120000 3072 6155;16276 2053 2099 3518 3518 0.058614318515992636 AQLSEEPYFSY 11 Unmodified _AQLSEEPYFSY_ 0 0 0 REV__nc|ENSG00000197822|Q16625-6|OCLN REV__nc|ENSG00000197822|Q16625-6|OCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.2989501953125 2 667.300975 1332.5874 -0.49705 -0.00033168 -0.2071 -0.0001382 -0.70415 -0.00046988 667.3007447969665 29.11 0.50807 29.11 28.903 29.411 0 66 24 3 0 0 0 0.71618 1 15104 15104 2.7352 1.0826 1 3470100 + 3073 29893 2054 2100 3519 3519 -0.06559238009845103 AQMTYYAQCY 10 Unmodified _AQMTYYAQCY_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5029602050781 3 414.503703 1240.48928 -0.29291 -0.00012141 -0.39281 -0.00016282 -0.68572 -0.00028423 414.5036735634962 41.821 0.24453 41.515 41.375 41.619 -0.30682 22 11 3 0 0 0 0.67033 1 22167 22167 3.3196 0 1 14851000 3074 1681 2055 2101 3520 3520 -0.12134461131040553 AQNIREVIF 9 Unmodified _AQNIREVIF_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8739013671875 3 363.873224 1088.59784 1.6013 0.00058268 -0.33423 -0.00012162 1.2671 0.00046106 363.87307657423145 38.135 0.52831 33.766 33.501 34.03 -4.3689 95 31 4 0 0 0 0.5029 1 22585 22585 4.5289 0.33936 1 147610000 + 3075 19637 2056 2102 3521 3521 0.057088342259021374 AQPQDQQAKL 10 Unmodified _AQPQDQQAKL_ 0 0 0 ENST00000439129.5_2_22:42520268-42520406:+|nuORF ENST00000439129.5_2_22:42520268-42520406:+|nuORF ENST00000439129.5_2_22:42520268-42520406:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7846069335938 2 563.796195 1125.57784 NaN NaN NaN NaN NaN NaN NaN 47.212 1 47.212 46.712 47.712 0 0 0 0 0.95639 1 25842 25842 5.7319 1.4026 1 3076 13369 2057 2103 3522 3522 0.020070384952759923 AQPSYQVIF 9 Unmodified _AQPSYQVIF_ 0 0 0 REV__nc|ENSG00000130939|O95155-3|UBE4B REV__nc|ENSG00000130939|O95155-3|UBE4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7708129882812 2 526.7742 1051.53385 NaN NaN NaN NaN NaN NaN NaN 17.961 1 17.975 17.475 18.475 0.013865 0 0 0 0.83049 1 8970 8970 3.9444 0.3479 1 + 3077 19753 2058 2104 3523 3523 0.010140540689462796 AQQKRLEAL 9 Unmodified _AQQKRLEAL_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8768005371094 3 352.876857 1055.60874 -0.57951 -0.0002045 0.24619 8.6874E-05 -0.33332 -0.00011762 352.8769867336901 34.575 0.23445 34.575 34.422 34.656 0 28 11 3 0 0 0 0.10734 1 18208 18208 23.79 2.1996 1 3094900 3078 5169 2059 2105 3524 3524 0.08316236600194316 AQQKRLEAL 9 Unmodified _AQQKRLEAL_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8113403320312 2 528.811648 1055.60874 0.40293 0.00021307 -0.58766 -0.00031076 -0.18473 -9.7685E-05 528.8113713819586 38.521 0.19899 34.152 34.058 34.257 -4.3689 21 12 2 0 0 0 0.16226 1 22781 22781 26.884 1.4843 1 9080700 3079 5169 2059 2105 3525 3525 0.08316236600194316 AQQTFLYSRYH 11 Unmodified _AQQTFLYSRYH_ 0 0 0 ENST00000466440.1_1_1:52890998-52891100:-|nuORF ENST00000466440.1_1_1:52890998-52891100:-|nuORF ENST00000466440.1_1_1:52890998-52891100:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 707.3517456054688 2 707.349126 1412.6837 NaN NaN NaN NaN NaN NaN NaN 52.782 1 47.048 46.548 47.548 -5.7345 0 0 0 0.76766 1 33326 33326 13.615 2.8154 1 3080 13757 2060 2106 3526 3526 -0.006136256592526479 AQRAPCLA 8 Unmodified _AQRAPCLA_ 0 0 0 REV__ENST00000380858.1_1_12:40499564-40499843:-|nuORF REV__ENST00000380858.1_1_12:40499564-40499843:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2201538085938 2 415.22108 828.427607 0.63447 0.00026345 -1.7816 -0.00073975 -1.1471 -0.0004763 415.220119287143 47.562 0.242 47.209 47.105 47.347 -0.3526 24 11 3 0 0 0 0.80992 1 25495 25495 0.69038 0 1 4372500 + 3081 26319 2061 2107 3527 3527 0.006530200226166016 AQRNVYHF 8 Unmodified _AQRNVYHF_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7618408203125 2 517.761958 1033.50936 NaN NaN NaN NaN NaN NaN NaN 86.762 1 86.762 86.262 87.262 0 0 0 0 0.97444 1 48052 48052 0.69038 0 1 + 3082 20613 2062 2108 3528 3528 -0.006051612939245388 AQRQRELYSQQ 11 Unmodified _AQRQRELYSQQ_ 0 0 0 nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1 nc|ENSG00000084676|Q15788-2|NCOA1 nc|ENSG00000084676|Q15788-2|NCOA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 703.8594970703125 2 703.860389 1405.70622 NaN NaN NaN NaN NaN NaN NaN 29.104 1 29.042 28.542 29.542 -0.062159 0 0 0 0.93969 1 15044 15044 2.7352 0 1 3083 1393 2063 2109 3529 3529 0.019599737383714455 AQSVKGFWR 9 Unmodified _AQSVKGFWR_ 0 0 0 REV__ENST00000489914.1_1_2:74732213-74732711:-|nuORF REV__ENST00000489914.1_1_2:74732213-74732711:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1980895996094 3 360.197931 1077.57196 -0.038039 -1.3702E-05 -0.64772 -0.00023331 -0.68576 -0.00024701 360.1980290182019 15.225 0.30851 15.231 15.144 15.452 0.0057774 24 16 2 0 0 0 0.41742 1 7586 7586 7.609 0.50723 1 1714800 + 3084 27871 2064 2110 3530 3530 0.03627984774266224 AQTEVIATL 9 Unmodified _AQTEVIATL_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2 ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2669067382812 2 473.266207 944.517862 NaN NaN NaN NaN NaN NaN NaN 55.582 1 55.582 55.082 56.082 0 0 0 0 0.032808 1 30882 30882 65.235 38.351 1 3085 7060 2065 2111 3531 3531 0.04338347832049294 AQVAEDWS 8 Unmodified _AQVAEDWS_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 905.4007568359375 1 905.399938 904.392661 -0.059322 -5.371E-05 0.35733 0.00032353 0.29801 0.00026982 905.4000854017248 49.013 0.30087 49.013 48.874 49.174 0 25 14 2 0 0 0 0.26159 2 26907 26907;27017 60.39 32.704 1 7435800 + 3086 17708 2066 2112 3532;3533 3532 -0.06335944304339591 AQVAEDWS 8 Unmodified _AQVAEDWS_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2033386230469 2 453.203607 904.392661 0.31085 0.00014088 -0.23443 -0.00010625 0.076421 3.4634E-05 453.20353068146306 49.011 0.30087 49.011 48.874 49.174 0 34 14 3 0 0 0 0.19792 1 26933 26933 70.716 30.758 1 6333400 + 3087 17708 2066 2112 3534 3534 -0.06335944304339591 AQVAEDWS 8 Unmodified _AQVAEDWS_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 905.3984985351562 1 905.399938 904.392661 0.35378 0.00032032 0.15524 0.00014055 0.50902 0.00046087 905.4004569132172 56.699 0.24376 50.722 50.615 50.859 -5.9769 14 13 2 0 0 0 0.13832 1 36226 36226 89.427 37.158 1 9991800 + 3088 17708 2066 2112 3535 3535 -0.06335944304339591 AQVAEDWS 8 Unmodified _AQVAEDWS_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 905.399938 904.392661 -0.059322 -5.371E-05 0.35733 0.00032353 0.29801 0.00026982 905.4000854017248 49.013 0.30087 49.013 48.874 49.174 0 0 0 NaN 60.39 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 7435800 + 3089 17708 2066 2112 -0.06335944304339591 AQYDRQIRL 9 Unmodified _AQYDRQIRL_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1;ENST00000600753.1_1_19:47634148-47653459:+|nuORF nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.2169189453125 3 388.215761 1161.62546 -0.5827 -0.00022621 1.1576 0.00044941 0.57494 0.0002232 388.2162915309621 33.177 0.21592 33.177 33.13 33.345 0 17 10 2 0 0 0 0.43463 1 17380 17380 15.248 8.6181 1 1499700 3090 5403 2067 2113 3536 3536 0.051107374861203425 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2654418945312 2 533.264196 1064.51384 NaN NaN NaN NaN NaN NaN NaN 22.3 1 22.3 21.8 22.8 0 0 0 0 0.13831 1 11336 11336 38.176 3.7738 1 + 3091 7667 2068 2114 3537 3537 -0.015837416616705013 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2642211914062 2 533.264196 1064.51384 -0.1955 -0.00010425 0.18171 9.6902E-05 -0.013786 -7.3516E-06 533.2642693581884 22.31 0.29998 22.333 22.142 22.442 0.022894 41 13 4 0 0 0 0.020973 2 11287 11287;11390 62.573 3.8998 1 11477000 + 3092 7667 2068 2114 3538;3539 3538 -0.015837416616705013 AQYEDIAQK 9 Unmodified _AQYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2651977539062 2 533.264196 1064.51384 0.1646 8.7773E-05 1.2594 0.00067161 1.424 0.00075938 533.2650292310519 22.245 0.16553 22.259 22.157 22.322 0.013796 10 6 2 0 0 0 0.2324 1 11421 11421 20.415 3.3016 1 588670 + 3093 7667 2068 2114 3540 3540 -0.015837416616705013 AQYEDIAQKS 10 Unmodified _AQYEDIAQKS_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7804565429688 2 576.78021 1151.54587 -0.046961 -2.7086E-05 0.75234 0.00043394 0.70538 0.00040685 576.7805572266806 23.039 0.1699 23.039 22.974 23.144 0 15 8 2 0 0 0 0.56675 1 11731 11731 12.873 2.722 1 643440 + 3094 7667 2069 2115 3541 3541 -0.023843739785206708 AQYEDIAQKS 10 Unmodified _AQYEDIAQKS_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2821044921875 2 576.78021 1151.54587 0.062418 3.6002E-05 -0.82435 -0.00047547 -0.76193 -0.00043946 576.7798929239618 23.145 0.17475 23.157 23.032 23.206 0.012396 13 7 2 0 0 0 0.07026 1 11765 11765 53.317 15.141 1 5346500 + 3095 7667 2069 2115 3542 3542 -0.023843739785206708 AQYEEIAQR 9 Unmodified _AQYEEIAQR_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.27490234375 2 554.275095 1106.53564 0.03235 1.7931E-05 -0.43027 -0.00023849 -0.39792 -0.00022056 554.2744141424205 24.28 0.085842 24.28 24.227 24.312 0 9 7 2 0 0 0 0.32235 1 12411 12411 16.149 7.4037 1 605420 + 3096 177;9374;9329 2070 2116 3543 3543 -0.013369369130941777 AQYEEIAQR 9 Unmodified _AQYEEIAQR_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2750854492188 2 554.275095 1106.53564 0.3287 0.00018219 0.39214 0.00021736 0.72084 0.00039955 554.2748894773327 24.483 0.18023 24.481 24.379 24.559 -0.0016747 14 6 3 0 0 0 0.0071894 1 12512 12512 111.29 59.019 1 5929400 + 3097 177;9374;9329 2070 2116 3544 3544 -0.013369369130941777 AQYEHDLEV 9 Unmodified _AQYEHDLEV_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2539672851562 2 552.253828 1102.4931 0.3279 0.00018108 0.23074 0.00012743 0.55864 0.00030851 552.2538620131628 35.808 0.416 35.808 35.594 36.01 0 55 20 4 0 0 0 0.078314 1 18988 18988 38.176 4.0731 1 37379000 3098 4395 2071 2117 3545 3545 -0.05404332041325688 AQYEHDLEV 9 Unmodified _AQYEHDLEV_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2542114257812 2 552.253828 1102.4931 0.87952 0.00048572 0.097017 5.3578E-05 0.97654 0.0005393 552.2537245495365 40.652 0.56495 36.122 35.84 36.405 -4.5294 85 34 3 0 0 0 0.044296 2 24365 24238;24365 47.594 16.889 1 63461000 3099 4395 2071 2117 3546;3547 3547 -0.05404332041325688 AQYEHDLEVA 10 Unmodified _AQYEHDLEVA_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7706298828125 2 587.772385 1173.53022 -0.63366 -0.00037245 -0.55817 -0.00032808 -1.1918 -0.00070053 587.7712678300821 34.184 0.18602 34.184 34.103 34.289 0 16 9 2 0 0 0 0.32072 1 17974 17974 26.268 0 1 4355700 3100 4395 2072 2118 3548 3548 -0.049606604955670264 AQYYGAIVY 9 Unmodified _AQYYGAIVY_ 0 0 0 REV__nc|ENSG00000131148|O43402-2|EMC8 REV__nc|ENSG00000131148|O43402-2|EMC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2603759765625 2 524.260925 1046.5073 NaN NaN NaN NaN NaN NaN NaN 71.679 1 71.679 71.179 72.179 0 0 0 0 0.82739 1 39923 39923 4.3292 0.73274 1 + 3101 19777 2073 2119 3549 3549 -0.014096348223802124 ARAAEDPLVY 10 Unmodified _ARAAEDPLVY_ 0 0 0 REV__ENSG00000138166|ENST00000369583|DUSP5 REV__ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8609008789062 3 368.860984 1103.56112 -0.45492 -0.0001678 0.19161 7.0677E-05 -0.26331 -9.7124E-05 368.861049421533 20.031 0.24139 20.031 19.888 20.129 0 68 30 3 0 0 0 0.63399 1 10061 10061 8.4443 2.2525 1 2036800 + 3102 20311 2074 2120 3550 3550 0.013485376093285595 ARAAEDPLVY 10 Unmodified _ARAAEDPLVY_ 0 0 0 REV__ENSG00000138166|ENST00000369583|DUSP5 REV__ENSG00000138166|ENST00000369583|DUSP5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 368.860984 1103.56112 -0.45492 -0.0001678 0.19161 7.0677E-05 -0.26331 -9.7124E-05 368.861049421533 20.031 0.24139 20.031 19.888 20.129 0 0 0 NaN 8.4443 68 30 3 NaN NaN NaN NaN 0 NaN NaN 0 2036800 + 3103 20311 2074 2120 0.013485376093285595 ARAKKIYML 9 Unmodified _ARAKKIYML_ 0 0 0 REV__nc|ENSG00000178053|P58340-3|MLF1 REV__nc|ENSG00000178053|P58340-3|MLF1 MSMS AL20221201_MKP_PDAC_01 4 547.3321533203125 2 547.331162 1092.64777 NaN NaN NaN NaN NaN NaN NaN 109.21 1 103.03 102.53 103.53 -6.1757 0 0 0 0.85737 1 72947 72947 0.6015 0 1 + 3104 29810 2075 2121 3551 3551 0.10515245630199388 ARCISSSSEYF 11 Unmodified _ARCISSSSEYF_ 0 0 0 REV__nc|ENSG00000103196|Q9H0B8-2|CRISPLD2 REV__nc|ENSG00000103196|Q9H0B8-2|CRISPLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.1889953613281 3 417.188772 1248.54449 0.02823 1.1777E-05 0.58274 0.00024311 0.61097 0.00025489 417.18899275184157 39.604 0.38752 39.604 39.424 39.812 0 67 18 5 0 0 0 0.71341 1 21302 21302 1.2148 0.021489 1 76008000 + 3105 18290 2076 2122 3552 3552 -0.0698433133893559 ARDEFYRWFQK 11 Unmodified _ARDEFYRWFQK_ 0 0 0 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95918480-95934190:-|nuORF;nc|ENSG00000176438|Q6ZMZ3-3|SYNE3 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 773.383544921875 2 773.3835 1544.75245 0.1164 9.0023E-05 0.036394 2.8146E-05 0.15279 0.00011817 773.3833618954001 93.058 0.30878 92.6 92.462 92.771 -0.4574 47 16 4 0 0 0 0.74203 1 50947 50947 0.30703 0.03801 1 1633800 3106 8593 2077 2123 3553 3553 0.001860386404359815 AREAELDRV 9 Unmodified _AREAELDRV_ 0 0 0 REV__ENSG00000125864|ENST00000377873|BFSP1 REV__ENSG00000125864|ENST00000377873|BFSP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5265197753906 3 353.524484 1057.55162 1.6926 0.00059837 2.8129 0.00099443 4.5055 0.0015928 353.5258301677064 36.897 0.32452 32.613 32.472 32.796 -4.2835 30 19 2 0 0 0 0.28023 1 21610 21610 12.873 0 1 4216900 + 3107 19522 2078 2124 3554 3554 0.025147693238068314 ARESKKDSL 9 Unmodified _ARESKKDSL_ 0 0 0 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2855834960938 2 517.285463 1032.55637 NaN NaN NaN NaN NaN NaN NaN 50.519 1 50.106 49.606 50.606 -0.41351 0 0 0 0.63508 1 27205 27205 11.495 0.67078 1 + 3108 19171 2079 2125 3555 3555 0.041396534665636864 ARFVETLL 8 Unmodified _ARFVETLL_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7800903320312 2 474.779285 947.544017 NaN NaN NaN NaN NaN NaN NaN 44.85 1 44.828 44.328 45.328 -0.022064 0 0 0 0.96305 1 24074 24074 7.9102 0 1 3109 4655 2080 2126 3556 3556 0.06814661794192034 ARGAAGVW 8 Unmodified _ARGAAGVW_ 0 0 0 REV__ENST00000568198.1_1_16:1393433-1394289:+|nuORF REV__ENST00000568198.1_1_16:1393433-1394289:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2161560058594 2 394.214112 786.413671 -0.014823 -5.8435E-06 1.7125 0.00067509 1.6977 0.00066925 394.2147242785321 38.439 0.34741 38.456 38.336 38.683 0.01704 33 16 3 0 0 0 0.80676 1 20390 20390 2.5775 1.7838 1 12655000 + 3110 28939 2081 2127 3557 3557 0.011921105858391456 ARGAAGVW 8 Unmodified _ARGAAGVW_ 0 0 0 REV__ENST00000568198.1_1_16:1393433-1394289:+|nuORF REV__ENST00000568198.1_1_16:1393433-1394289:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2136840820312 2 394.214112 786.413671 0.141 5.5584E-05 0.39526 0.00015582 0.53626 0.0002114 394.2143628861998 39.329 0.36046 39.341 39.129 39.489 0.011456 30 16 3 0 0 0 0.80676 1 20923 20923 2.5775 1.7838 1 4059400 + 3111 28939 2081 2127 3558 3558 0.011921105858391456 ARGAVSGW 8 Unmodified _ARGAVSGW_ 0 0 0 ENST00000286091.8_1_7:148700270-148700423:-|nuORF ENST00000286091.8_1_7:148700270-148700423:-|nuORF ENST00000286091.8_1_7:148700270-148700423:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2124938964844 2 402.211569 802.408586 NaN NaN NaN NaN NaN NaN NaN 27.778 1 27.808 27.308 28.308 0.029564 0 0 0 0.96305 1 14445 14445 7.9102 2.6795 1 3112 11442 2082 2128 3559 3559 -0.0005219327675831664 ARGGPPEAF 9 Unmodified _ARGGPPEAF_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2302856445312 2 451.229959 900.445365 0.72369 0.00032655 0.84789 0.00038259 1.5716 0.00070915 451.2302901120519 60.63 0.51179 60.587 60.415 60.927 -0.04351 58 25 3 0 0 0 0.43463 1 33051 33051 10.824 2.2306 1 21340000 3113 7187 2083 2129 3560 3560 -0.008839414508656773 ARGGPPEAF 9 Unmodified _ARGGPPEAF_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.229959 900.445365 -0.22931 -0.00010347 2.8888 0.0013035 2.6595 0.0012 451.2313728954925 60.73 0.10101 60.241 60.168 60.269 -0.48932 -0.12673 0.0015739 NaN 10.824 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1436500 3114 7187 2083 2129 -0.008839414508656773 ARGLEAKTCF 10 Unmodified _ARGLEAKTCF_ 0 0 0 nc|ENSG00000166432|Q5H9K5-2|ZMAT1;nc|ENSG00000166432|Q5H9K5|ZMAT1;ENSG00000166432|ENST00000651725|ZMAT1 nc|ENSG00000166432|Q5H9K5-2|ZMAT1 nc|ENSG00000166432|Q5H9K5-2|ZMAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8932189941406 3 365.858698 1094.55426 1.0679 0.0003907 -0.63958 -0.00023399 0.42833 0.00015671 365.8586942642479 27.658 0.36723 24.621 24.454 24.822 -3.0365 45 18 4 0 0 0 0.62068 1 15247 15247 5.7834 1.3773 1 24249000 3115 7485 2084 2130 3561 3561 0.01076901457099666 ARHGMSPY 8 Unmodified _ARHGMSPY_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7156372070312 2 459.716162 917.41777 NaN NaN NaN NaN NaN NaN NaN 73.546 1 73.07 72.57 73.57 -0.47588 0 0 0 0.97444 1 40249 40249 2.5775 0 1 + 3116 19548 2085 2131 3562 3562 -0.04424167982756444 ARHPHPHLSF 10 Unmodified _ARHPHPHLSF_ 0 0 0 CON__P02668 CON__P02668 CON__P02668 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2123718261719 3 400.212463 1197.61556 NaN NaN NaN NaN NaN NaN NaN 20.274 1 20.284 19.784 20.784 0.010553 0 0 0 0.94985 1 10335 10335 5.7834 1.5939 1 + 3117 159 2086 2132 3563 3563 0.024655942713934564 ARIADKIAFF 10 Unmodified _ARIADKIAFF_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.05029296875 3 384.557236 1150.64988 -0.28032 -0.0001078 0.04216 1.6213E-05 -0.23816 -9.1585E-05 384.55721335812325 36.503 0.23095 36.525 36.349 36.58 0.021545 17 10 2 0 0 0 0.23922 1 19318 19318 3.8763 2.0321 1 3930800 + 3118 21419 2087 2133 3564 3564 0.08057997639639325 ARKLCPGR 8 Unmodified _ARKLCPGR_ 0 0 0 ENST00000397601.5_1_13:97999059-97999149:+|nuORF ENST00000397601.5_1_13:97999059-97999149:+|nuORF ENST00000397601.5_1_13:97999059-97999149:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.763916015625 2 450.763446 899.51234 NaN NaN NaN NaN NaN NaN NaN 17.978 1 15.391 14.891 15.891 -2.5866 0 0 0 0.83301 1 9444 9444 21.747 9.2151 1 3119 12826 2088 2134 3565 3565 0.05856390559256397 ARKLKALIKKV 11 Unmodified _ARKLKALIKKV_ 0 0 0 REV__ENSG00000198146|ENST00000356321|ZNF770 REV__ENSG00000198146|ENST00000356321|ZNF770 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.4486694335938 2 634.450457 1266.88636 NaN NaN NaN NaN NaN NaN NaN 23.331 1 23.331 22.831 23.831 0 0 0 0 0.9435 1 11889 11889 0 0 1 + 3120 23994 2089 2135 3566 3566 0.26359349203926286 ARLFSHHVK 9 Unmodified _ARLFSHHVK_ 0 0 0 REV__nc|ENSG00000160293|P52735-3|VAV2 REV__nc|ENSG00000160293|P52735-3|VAV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.8145751953125 2 547.814525 1093.6145 -0.34082 -0.00018671 -0.21436 -0.00011743 -0.55518 -0.00030414 547.8145079848608 32.88 0.19154 32.721 32.596 32.787 -0.15918 13 7 2 0 0 0 0.28023 1 17118 17118 18.146 1.9972 1 2112100 + 3121 21531 2090 2136 3567 3567 0.07143379902527158 ARLGMHVI 8 Unmodified _ARLGMHVI_ 0 0 0 ENSG00000169084|ENST00000334651|DHRSX;ENST00000430536.7_1_X:2256005-2418966:-|nuORF ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.77783203125 2 448.760372 895.506192 0.45509 0.00020422 -1.6854 -0.00075633 -1.2303 -0.00055211 448.7595681948655 72.554 0.27667 72.554 72.334 72.611 0 19 10 2 0 0 0 8.7369 1 40413 40413 0.79363 0 1 676410 3122 7832 2091 2137 3568 3568 0.05425872327714387 ARLMRPVRAVP 11 Unmodified _ARLMRPVRAVP_ 0 0 0 ENST00000046640.7_1_17:3540070-3540534:+|nuORF ENST00000046640.7_1_17:3540070-3540534:+|nuORF ENST00000046640.7_1_17:3540070-3540534:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5927734375 3 422.592286 1264.75503 0.85552 0.00036154 1.1424 0.00048278 1.9979 0.00084431 422.59277785732024 82.554 0.71917 76.378 76.144 76.863 -6.1757 71 40 2 0 0 0 0.73237 1 54241 54241 1.2148 0 1 14184000 3123 10971 2092 2138 3569 3569 0.13324215564421138 ARLPGLSL 8 Unmodified _ARLPGLSL_ 0 0 0 REV__ENST00000163416.6_1_14:93260633-93260768:+|nuORF REV__ENST00000163416.6_1_14:93260633-93260768:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5623474121094 2 413.760895 825.507237 -0.30591 -0.00012657 0.016425 6.7962E-06 -0.28949 -0.00011978 413.76087947538764 55.584 0.30819 55.515 55.358 55.666 -0.068737 39 15 3 0 0 0 8.7369 1 30141 30141 20.454 0 1 46522000 + 3124 24713 2093 2139 3570 3570 0.0875040996829739 ARLPRQLLAL 10 Unmodified _ARLPRQLLAL_ 0 0 0 REV__ENST00000449707.5_1_2:219507052-219507328:-|nuORF REV__ENST00000449707.5_1_2:219507052-219507328:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.6283569335938 2 575.874582 1149.73461 NaN NaN NaN NaN NaN NaN NaN 104.65 1 104.6 104.1 105.1 -0.048737 0 0 0 1.0024 1 58107 58107 0.40072 0 1 + 3125 27190 2094 2140 3571 3571 0.16573368176295844 ARLRLEIHT 9 Unmodified _ARLRLEIHT_ 0 0 0 nc|ENSG00000293109|Q96IX9|ANKRD36BP1 nc|ENSG00000293109|Q96IX9|ANKRD36BP1 nc|ENSG00000293109|Q96IX9|ANKRD36BP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2092590332031 3 370.224368 1107.65128 -0.17378 -6.4339E-05 -0.94352 -0.00034931 -1.1173 -0.00041365 370.2236285242972 30.765 0.15965 30.795 30.67 30.83 0.030106 9 6 2 0 0 0 0.21874 1 16050 16050 1.1933 0.23107 1 731300 3126 16650 2095 2141 3572 3572 0.10175631728407097 ARLSAITEH 9 Unmodified _ARLSAITEH_ 0 0 0 REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3 REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3 MSMS AL20221201_MKP_PDAC_01 4 499.2757568359375 2 499.274898 996.535243 NaN NaN NaN NaN NaN NaN NaN 92.85 1 86.675 86.175 87.175 -6.1757 0 0 0 0.76439 1 61416 61416 7.2892 0 1 + 3127 20499 2096 2142 3573 3573 0.036836881577073655 ARMRAVKHAVL 11 Unmodified _ARMRAVKHAVL_ 0 0 0 REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9206237792969 3 417.920403 1250.73938 0.29394 0.00012284 0.90843 0.00037965 1.2024 0.00050249 417.92067857490593 40.091 0.94405 40.096 39.688 40.633 0.0050545 154 44 4 0 0 0 0.73237 1 21407 21407 1.2148 1.2148 1 35230000 + 3128 30096 2097 2143 3574 3574 0.1240392904737746 ARMRAVKHAVL 11 Unmodified _ARMRAVKHAVL_ 0 0 0 REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9209594726562 3 417.920403 1250.73938 0.20716 8.6575E-05 1.1412 0.00047693 1.3483 0.0005635 417.9207968951675 40.843 0.42517 40.842 40.711 41.136 -0.0017929 69 20 4 0 0 0 0.71728 2 21766 21766;21870 2.6312 0.88896 1 29584000 + 3129 30096 2097 2143 3575;3576 3575 0.1240392904737746 ARMRAVKHAVL 11 Unmodified _ARMRAVKHAVL_ 0 0 0 REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant REV__SBF1|p.E449K|1|0.16|ENSG00000100241|chr22:50464905-50464905|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.9215087890625 3 417.920403 1250.73938 0.70371 0.0002941 1.0384 0.00043396 1.7421 0.00072806 417.9206564703023 45.389 0.31413 40.434 40.284 40.598 -4.9549 50 21 3 0 0 0 0.73237 1 27830 27830 1.2148 0.51716 1 31133000 + 3130 30096 2097 2143 3577 3577 0.1240392904737746 ARNERIYVY 9 Unmodified _ARNERIYVY_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2118835449219 3 395.212128 1182.61456 -0.37016 -0.00014629 0.5208 0.00020583 0.15065 5.9538E-05 395.2125279526703 29.38 0.18534 29.38 29.285 29.47 0 12 8 2 0 0 0 0.51218 1 15220 15220 10.8 8.8931 1 1017000 3131 8633 2098 2144 3578 3578 0.030553351118669525 ARPALLLLL 9 Unmodified _ARPALLLLL_ 0 0 0 ENSG00000184232|ENST00000328965|OAF ENSG00000184232|ENST00000328965|OAF ENSG00000184232|ENST00000328965|OAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.3366088867188 2 490.33677 978.658987 0.88507 0.00043398 -0.016982 -8.327E-06 0.86809 0.00042565 490.3367297758868 90.495 0.55079 90.537 90.272 90.823 0.042175 58 19 4 0 0 0 0.042911 1 50265 50265 48.346 0 1 174900000 3132 9234 2099 2145 3579 3579 0.16880390996004735 ARPGGKQK 8 Unmodified _ARPGGKQK_ 0 0 0 ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF ENST00000509933.1_1_6:3231852-3232104:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2543334960938 2 421.253769 840.492984 0.90392 0.00038078 0.65579 0.00027626 1.5597 0.00065703 421.253981590881 70.604 1.0639 70.64 70.401 71.465 0.035515 83 48 3 0 0 0 0.80992 1 38903 38903 0.69038 0.69038 1 7673500 3133 14580 2100 2146 3580 3580 0.06635757539982023 ARPGGLGSSSL 11 Unmodified _ARPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2720642089844 2 501.272355 1000.53016 -0.40855 -0.0002048 0.49336 0.00024731 0.084803 4.251E-05 501.27277983927127 30.162 0.18537 30.162 30.078 30.263 0 18 8 3 0 0 0 0.017923 1 15671 15671 59.368 19.411 1 2168500 + 3134 199 2101 2147 3581 3581 0.02991384295091848 ARPGGLGSSSL 11 Unmodified _ARPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2722778320312 2 501.272355 1000.53016 0.37017 0.00018555 0.65752 0.0003296 1.0277 0.00051515 501.27260588429795 30.181 0.25713 30.1 29.948 30.205 -0.080429 19 9 3 0 0 0 0.0071133 1 15659 15659 71.708 27.936 1 3973500 + 3135 199 2101 2147 3582 3582 0.02991384295091848 ARPGGLGSSSL 11 Unmodified _ARPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2741088867188 2 501.272355 1000.53016 1.4777 0.00074072 0.51203 0.00025667 1.9897 0.00099739 501.2726919215051 34.019 0.45074 30.034 29.765 30.216 -3.9853 54 24 3 0 0 0 0.0056475 2 19636 19508;19636 74.2 27.298 1 52215000 + 3136 199 2101 2147 3583;3584 3584 0.02991384295091848 ARPKGKGP 8 Unmodified _ARPKGKGP_ 0 0 0 REV__ENSG00000100167|ENST00000644076|SEPTIN3 REV__ENSG00000100167|ENST00000644076|SEPTIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.7512512207031 2 405.750862 809.487171 -0.0046438 -1.8842E-06 1.2121 0.00049179 1.2074 0.00048991 405.7511411601869 37.967 0.20123 37.967 37.806 38.007 0 14 9 2 0 0 0 0.80992 1 20251 20251 0.69038 0 1 1176300 + 3137 18022 2102 2148 3585 3585 0.07480659028328773 ARPPAPALSP 10 Unmodified _ARPPAPALSP_ 0 0 0 ENST00000472558.6_1_12:6657995-6658223:-|nuORF ENST00000472558.6_1_12:6657995-6658223:-|nuORF ENST00000472558.6_1_12:6657995-6658223:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7839050292969 2 488.782359 975.550165 0.95546 0.00046701 1.0396 0.00050814 1.9951 0.00097516 488.7828762073377 34.97 0.47668 30.875 30.581 31.058 -4.0951 43 27 2 0 0 0 0.095098 1 20256 20256 47.749 7.7914 1 11234000 3138 13907 2103 2149 3586 3586 0.061411800256905735 ARPPGALL 8 Unmodified _ARPPGALL_ 0 0 0 ENST00000510733.1_1_4:155665168-155665375:+|nuORF ENST00000510733.1_1_4:155665168-155665375:+|nuORF ENST00000510733.1_1_4:155665168-155665375:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.7476196289062 2 397.747788 793.481023 0.0084068 3.3438E-06 -0.62084 -0.00024694 -0.61243 -0.00024359 397.74753077290967 39.11 0.18523 38.823 38.719 38.904 -0.28687 11 7 2 0 0 0 0.63229 1 20632 20632 23.148 0 1 1452400 3139 14593 2104 2150 3587 3587 0.07602140796791446 ARPPTVIL 8 Unmodified _ARPPTVIL_ 0 0 0 ENSG00000061656|ENST00000374273|SPAG4 ENSG00000061656|ENST00000374273|SPAG4 ENSG00000061656|ENST00000374273|SPAG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7767944335938 2 433.776545 865.538538 0.38276 0.00016603 0.41211 0.00017876 0.79487 0.00034479 433.7764417358385 48.492 0.25458 48.121 47.945 48.2 -0.37172 18 12 2 0 0 0 0.58902 1 25998 25998 26.884 9.9414 1 1958000 3140 839 2105 2151 3588 3588 0.10038983002368695 ARPRWHAPGL 10 Unmodified _ARPRWHAPGL_ 0 0 0 ENST00000457407.1_1_2:191399605-191399791:+|nuORF ENST00000457407.1_1_2:191399605-191399791:+|nuORF ENST00000457407.1_1_2:191399605-191399791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5541076660156 3 387.552708 1159.63629 0.042682 1.6542E-05 1.8886 0.00073195 1.9313 0.00074849 387.55342556287746 20.287 0.13045 20.298 20.208 20.339 0.010553 14 7 2 0 0 0 0.6606 1 10339 10339 6.6304 0 1 1679500 3141 13613 2106 2152 3589 3589 0.0628618465107138 ARPSPQVPA 9 Unmodified _ARPSPQVPA_ 0 0 0 ENST00000534407.5_1_11:124757602-124761787:-|nuORF;ENST00000532216.5_1_11:124756354-124763822:-|nuORF;nc|ENSG00000154133|Q8WZ75-3|ROBO4;nc|ENSG00000154133|Q8WZ75-2|ROBO4;ENSG00000154133|ENST00000306534|ROBO4 ENST00000534407.5_1_11:124757602-124761787:-|nuORF ENST00000534407.5_1_11:124757602-124761787:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7591552734375 2 461.758884 921.503215 0.15655 7.229E-05 1.0156 0.00046896 1.1721 0.00054125 461.7592963119218 23.396 0.33429 20.618 20.44 20.774 -2.7784 48 23 3 0 0 0 0.34999 1 12719 12719 14.838 1.7958 1 9378200 3142 6299 2107 2153 3590 3590 0.039323204745642215 ARPVHILN 8 Unmodified _ARPVHILN_ 0 0 0 REV__ENST00000520557.1_1_19:49442741-49447663:+|nuORF REV__ENST00000520557.1_1_19:49442741-49447663:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2779541015625 2 460.277244 918.539935 0.039262 1.8072E-05 0.18019 8.2939E-05 0.21945 0.00010101 460.2772660824178 37.388 0.33337 37.409 37.263 37.597 0.021545 36 15 3 0 0 0 0.55032 2 19804 19804;19905 30.225 0 1 13997000 + 3143 18374 2108 2154 3591;3592 3591 0.07740617091133117 ARQGKPGA 8 Unmodified _ARQGKPGA_ 0 0 0 ENST00000590190.1_2_19:56152446-56153815:+|nuORF ENST00000590190.1_2_19:56152446-56153815:+|nuORF ENST00000590190.1_2_19:56152446-56153815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2245788574219 2 392.724844 783.435135 0.59513 0.00023372 -0.3568 -0.00014013 0.23832 9.3596E-05 392.72476705988095 26.391 0.26022 23.44 23.3 23.56 -2.9511 22 13 2 0 0 0 0.61462 1 14460 14460 24.674 7.7316 1 7053100 3144 15681 2109 2155 3593 3593 0.03475495614554802 ARQQREPLPRA 11 Unmodified _ARQQREPLPRA_ 0 0 0 ENST00000290902.9_1_4:1161287-1161425:-|nuORF ENST00000290902.9_1_4:1161287-1161425:-|nuORF ENST00000290902.9_1_4:1161287-1161425:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2532653808594 3 441.253098 1320.73747 0.41794 0.00018442 -0.28879 -0.00012743 0.12915 5.6987E-05 441.2531319161616 21.58 0.16964 21.594 21.523 21.692 0.013796 37 20 2 0 0 0 0.69509 1 11067 11067 4.7159 1.1289 1 2469100 3145 11469 2110 2156 3594 3594 0.08992591563128371 ARQQREPLPRA 11 Unmodified _ARQQREPLPRA_ 0 0 0 ENST00000290902.9_1_4:1161287-1161425:-|nuORF ENST00000290902.9_1_4:1161287-1161425:-|nuORF ENST00000290902.9_1_4:1161287-1161425:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 441.253098 1320.73747 0.41794 0.00018442 -0.28879 -0.00012743 0.12915 5.6987E-05 441.2531319161616 21.58 0.16964 21.594 21.523 21.692 0.013796 -0.16342 -8.6496E-05 NaN 4.7159 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2469100 3146 11469 2110 2156 0.08992591563128371 ARRGQPLY 8 Unmodified _ARRGQPLY_ 0 0 0 REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.2012329101562 1 960.537375 959.530098 0.30397 0.00029197 2.0919 0.0020094 2.3959 0.0023014 960.5398459417645 72.987 0.34618 72.987 72.779 73.126 0 24 15 2 0 0 0 0.80722 1 40572 40572 2.3027 0 1 537240 + 3147 27971 2111 2157 3595 3595 0.04871429085744694 ARRHTAEA 8 Unmodified _ARRHTAEA_ 0 0 0 REV__nc|ENSG00000107282|Q02410-2|APBA1 REV__nc|ENSG00000107282|Q02410-2|APBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2437133789062 2 456.243932 910.473312 0.27756 0.00012664 -0.28601 -0.00013049 -0.0084493 -3.8549E-06 456.2439378204242 22.913 0.39541 20.134 19.91 20.305 -2.7784 51 27 3 0 0 0 0.74163 1 12303 12303 13.508 0 1 13067000 + 3148 18558 2112 2158 3596 3596 0.014493815292098589 ARRKGMPF 8 Unmodified _ARRKGMPF_ 0 0 0 nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4 nc|ENSG00000143847|O75335|PPFIA4 nc|ENSG00000143847|O75335|PPFIA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7721862792969 2 481.771271 961.52799 0.60309 0.00029055 1.3484 0.00064961 1.9515 0.00094016 481.7717196726268 85.95 0.35104 85.448 85.297 85.648 -0.50255 24 13 2 0 0 0 0.80975 1 47118 47118 0.79363 0 1 235210 3149 5559 2113 2159 3597 3597 0.04568677076304084 ARRKIRKKRKF 11 Unmodified _ARRKIRKKRKF_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MSMS AL20221201_MKP_PDAC_01 4 743.9984130859375 2 743.999503 1485.98445 NaN NaN NaN NaN NaN NaN NaN 103.76 1 97.582 97.082 98.082 -6.1757 0 0 0 0.9435 1 69539 69539 0 0 1 + 3150 19755 2114 2160 3598 3598 0.2608997057250235 ARRKKSIIHK 10 Unmodified _ARRKKSIIHK_ 0 0 0 ENST00000297063.10_1_7:36396923-36397070:-|nuORF ENST00000297063.10_1_7:36396923-36397070:-|nuORF ENST00000297063.10_1_7:36396923-36397070:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.4054565429688 2 618.904205 1235.79386 1.3764 0.00085189 0.32857 0.00020335 1.705 0.0010552 618.9042587768655 105.08 0.2054 98.909 98.789 98.995 -6.1757 108 27 5 0 0 0 0.72247 1 70305 70305 0.40072 0 1 2126999999.9999998 3151 11519 2115 2161 3599 3599 0.18539264190462745 ARRRNRRRLF 10 Unmodified _ARRRNRRRLF_ 0 0 0 ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.6240844726562 3 467.62386 1399.84975 -0.017392 -8.1329E-06 -0.89412 -0.00041811 -0.91151 -0.00042624 467.62331556638276 100.98 0.13779 100.94 100.87 101 -0.04216 13 4 4 0 0 0 0.72482 1 56100 56100 0.13989 0.04505 1 53448000 3152 7761 2116 2162 3600 3600 0.16581910150625845 ARRRRCCLHMA 11 Unmodified _ARRRRCCLHMA_ 0 0 0 REV__ENSG00000254126|ENST00000643224|CD8B2 REV__ENSG00000254126|ENST00000643224|CD8B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.5738525390625 3 458.237632 1371.69107 0.0030831 1.4128E-06 4.3164 0.0019779 4.3195 0.0019793 458.57351727701285 31.901 0.30713 31.931 31.866 32.173 0.030104 22 13 3 0 0 0 0.72952 1 16797 16797 0.50596 0 1 1143700 + 3153 24519 2117 2163 3601 3601 0.020087888641910467 ARRRRLRKREL 11 Unmodified _ARRRRLRKREL_ 0 0 0 REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF REV__ENST00000451493.5_1_13:36920782-36920917:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.9947204589844 3 503.993953 1508.96003 NaN NaN NaN NaN NaN NaN NaN 103.99 1 103.94 103.44 104.44 -0.048737 0 0 0 0.9434 1 57744 57744 0.073264 0.073264 1 + 3154 27208 2118 2164 3602 3602 0.2259071041903553 ARRRRRRWTWQ 11 Unmodified _ARRRRRRWTWQ_ 0 0 0 REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.4681396484375 2 814.46689 1626.91923 NaN NaN NaN NaN NaN NaN NaN 67.475 1 67.475 66.975 67.975 0 0 0 0 0.9435 1 37625 37625 0 0 1 + 3155 26602 2119 2165 3603 3603 0.13084369099397009 ARSDNTHYWL 10 Unmodified _ARSDNTHYWL_ 0 0 0 ENSG00000148483|ENST00000377495|TMEM236 ENSG00000148483|ENST00000377495|TMEM236 ENSG00000148483|ENST00000377495|TMEM236 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5349426269531 3 421.535271 1261.58398 0.93458 0.00039396 -1.5824 -0.00066705 -0.64786 -0.0002731 421.5346054885436 38.413 0.25504 34.044 33.855 34.11 -4.3689 28 15 2 0 0 0 0.62068 1 22612 22612 8.9762 4.8596 1 9282300 3156 5938 2120 2166 3604 3604 -0.03634443273199395 ARSKEKHIPLF 11 Unmodified _ARSKEKHIPLF_ 0 0 0 REV__ENST00000567662.5_1_15:72454352-72455956:-|nuORF REV__ENST00000567662.5_1_15:72454352-72455956:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.5956726074219 3 442.594461 1324.76155 NaN NaN NaN NaN NaN NaN NaN 44.996 1 44.974 44.474 45.474 -0.022064 0 0 0 0.93694 1 24156 24156 4.7159 0.30977 1 + 3157 28932 2121 2167 3605 3605 0.11216431996786014 ARTRCCFV 8 Unmodified _ARTRCCFV_ 0 0 0 REV__ENSG00000204882|ENST00000377741|GPR20 REV__ENSG00000204882|ENST00000377741|GPR20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2348022460938 2 478.233664 954.452776 1.647 0.00078767 -1.2882 -0.00061608 0.3588 0.00017159 478.2340534722351 82.065 0.39275 82.127 81.954 82.347 0.062004 34 15 3 0 0 0 0.80722 1 45363 45363 2.3027 0.24298 1 9628100 + 3158 24204 2122 2168 3606 3606 -0.02627248446435715 ARVARAFRRI 10 Unmodified _ARVARAFRRI_ 0 0 0 REV__ENST00000525192.5_1_11:45937841-45939521:-|nuORF REV__ENST00000525192.5_1_11:45937841-45939521:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 608.3851318359375 2 608.380897 1214.74724 NaN NaN NaN NaN NaN NaN NaN 105.07 1 98.898 98.398 99.398 -6.1757 0 0 0 0.99248 1 70366 70366 1.4819 0.28856 1 + 3159 28347 2123 2169 3607 3607 0.14845824359167636 ARWCHPGV 8 Unmodified _ARWCHPGV_ 0 0 0 ENST00000606066.1_1_20:44520620-44521015:+|nuORF ENST00000606066.1_1_20:44520620-44521015:+|nuORF ENST00000606066.1_1_20:44520620-44521015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4444580078125 1 925.446117 924.43884 0.41116 0.0003805 -2.4894 -0.0023038 -2.0783 -0.0019233 925.4440211349199 58.164 0.27982 58.164 58.036 58.316 0 13 10 2 0 0 0 0.80975 1 32465 32465 0.79363 0 1 885000 3160 15849 2124 2170 3608 3608 -0.026401578832292216 ARWLVTPVR 9 Unmodified _ARWLVTPVR_ 0 0 0 nc|ENSG00000198711|Q7Z2R9|SSBP3-AS1 nc|ENSG00000198711|Q7Z2R9|SSBP3-AS1 nc|ENSG00000198711|Q7Z2R9|SSBP3-AS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.5381774902344 3 366.557459 1096.65055 1.0524 0.00038577 -3.3809 -0.0012393 -2.3285 -0.00085353 366.891729502635 17.432 0.10358 14.845 14.754 14.858 -2.5866 20 15 2 0 0 0 0.21641 1 9110 9110 4.1895 0 1 2616400 3161 16494 2125 2171 3609 3609 0.1060883707937137 ARWRQQPSI 9 Unmodified _ARWRQQPSI_ 0 0 0 REV__ENSG00000111341|ENST00000539261|MGP REV__ENSG00000111341|ENST00000539261|MGP MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.213623046875 3 381.212351 1140.61522 1.4475 0.0005518 -4.4445 -0.0016943 -2.997 -0.0011425 381.8780885019684 32.446 0.53544 28.59 28.337 28.872 -3.8562 107 29 6 0 0 0 0.35911 1 18556 18556 14.405 4.3315 1 29108000 + 3162 18750 2126 2172 3610 3610 0.05054174551560209 ARWTPCRVL 9 Unmodified _ARWTPCRVL_ 0 0 0 REV__ENST00000462089.1_1_9:131022707-131022776:-|nuORF REV__ENST00000462089.1_1_9:131022707-131022776:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8731079101562 3 367.871049 1100.59132 1.8228 0.00067055 1.3919 0.00051204 3.2147 0.0011826 367.87151181275686 21.505 0.35525 18.77 18.62 18.976 -2.7348 69 30 3 0 0 0 0.45045 1 11613 11613 6.6304 6.6304 1 10304000 + 3163 27329 2127 2173 3611 3611 0.045046177935319065 ASAAAAAAAMF 11 Unmodified _ASAAAAAAAMF_ 0 0 0 REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B MSMS AL20221201_MKP_PDAC_01 4 476.7306213378906 2 476.731477 951.448402 NaN NaN NaN NaN NaN NaN NaN 50.073 1 44.534 44.034 45.034 -5.5391 0 0 0 0.18984 1 31362 31362 39.95 9.3132 1 + 3164 20429 2128 2174 3612 3612 -0.029264343883710353 ASAAHFLI 8 Unmodified _ASAAHFLI_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2318725585938 2 415.231971 828.449388 0.62665 0.00026021 -0.018583 -7.7161E-06 0.60807 0.00025249 415.2318627483803 46.812 0.2149 46.475 46.367 46.582 -0.33664 19 10 2 0 0 0 0.44122 1 25042 25042 40.449 6.2612 1 7206300 3165 5837 2129 2175 3613 3613 0.02830148042869496 ASAAPAFR 8 Unmodified _ASAAPAFR_ 0 0 0 REV__ENST00000395254.7_1_10:64134130-64135945:+|nuORF REV__ENST00000395254.7_1_10:64134130-64135945:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.2326965332031 2 395.713945 789.413337 1.3057 0.0005167 -0.09014 -3.567E-05 1.2156 0.00048103 395.71362357297136 55.035 0.30073 49.114 49.016 49.317 -5.9211 27 18 2 0 0 0 8.7369 1 35042 35042 11.64 1.4569 1 13802000 + 3166 26472 2130 2176 3614 3614 0.010206908659938563 ASAEALLPEL 10 Unmodified _ASAEALLPEL_ 0 0 0 REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2800903320312 2 507.279315 1012.54408 0.72483 0.00036769 -0.14062 -7.1332E-05 0.58422 0.00029636 507.27948259128397 51.514 0.31729 51.514 51.348 51.665 0 27 14 2 0 0 0 0.017277 1 28415 28415 78.149 0.16506 1 4825500 + 3167 28714 2131 2177 3615 3615 0.03830617003529824 ASAEALLPEL 10 Unmodified _ASAEALLPEL_ 0 0 0 REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.279296875 2 507.279315 1012.54408 0.83462 0.00042339 2.4101 0.0012226 3.2447 0.001646 507.78245766393815 59.807 0.1454 53.692 53.635 53.78 -6.1147 21 8 4 0 0 0 0.085354 1 38414 38414 49.933 13.889 1 35893000 + 3168 28714 2131 2177 3616 3616 0.03830617003529824 ASAEALLPEL 10 Unmodified _ASAEALLPEL_ 0 0 0 REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF REV__ENST00000551454.1_1_10:94452137-94452170:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.279315 1012.54408 0.72483 0.00036769 -0.14062 -7.1332E-05 0.58422 0.00029636 507.27948259128397 51.514 0.31729 51.514 51.348 51.665 0 0 0 NaN 78.149 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4825500 + 3169 28714 2131 2177 0.03830617003529824 ASAMFQRS 8 Unmodified _ASAMFQRS_ 0 0 0 ENST00000456775.1_1_7:116593398-116593683:-|nuORF ENST00000456775.1_1_7:116593398-116593683:-|nuORF ENST00000456775.1_1_7:116593398-116593683:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 449.2162170410156 2 449.215995 896.417436 NaN NaN NaN NaN NaN NaN NaN 84.564 1 78.388 77.888 78.888 -6.1757 0 0 0 0.93587 1 55641 55641 13.508 2.3934 1 3170 13602 2132 2178 3617 3617 -0.03491587702592369 ASATIVDYLGF 11 Unmodified _ASATIVDYLGF_ 0 0 0 ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR ENSG00000063438|ENST00000684583|AHRR ENSG00000063438|ENST00000684583|AHRR MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3087158203125 2 578.797872 1155.58119 1.459 0.00084449 1.9311 0.0011177 3.3901 0.0019622 578.798647815085 58.922 0.89103 52.847 52.28 53.171 -6.0745 160 49 4 0 0 0 0.59689 1 37461 37461 11.495 1.3113 1 339970000 3171 862 2133 2179 3618 3618 0.009622885492717614 ASCGRSQI 8 Unmodified _ASCGRSQI_ 0 0 0 ENST00000357749.6_1_X:85117728-85117830:-|nuORF ENST00000357749.6_1_X:85117728-85117830:-|nuORF ENST00000357749.6_1_X:85117728-85117830:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.579833984375 2 411.200344 820.386136 NaN NaN NaN NaN NaN NaN NaN 79.325 1 73.149 72.649 73.649 -6.1757 0 0 0 0.96305 1 51972 51972 7.9102 0 1 3172 12116 2134 2180 3619 3619 -0.03124160736695103 ASCLSSCGACY 11 Unmodified _ASCLSSCGACY_ 0 0 0 REV__ENST00000367188.4_1_1:204380617-204380770:-|nuORF REV__ENST00000367188.4_1_1:204380617-204380770:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7506103515625 2 532.69592 1063.37729 0.65649 0.00034971 0.1944 0.00010356 0.85089 0.00045326 533.1972246848201 53.748 0.27251 53.748 53.627 53.899 0 21 12 2 0 0 0 0.29564 1 29884 29884 5.7319 3.8876 1 2028100 + 3173 25976 2135 2181 3620 3620 -0.15186638479690373 ASDHPGGGREF 11 Unmodified _ASDHPGGGREF_ 0 0 0 nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000166006|Q96PR1-5|KCNC2;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;nc|ENSG00000166006|Q96PR1-2|KCNC2;ENSG00000166006|ENST00000549446|KCNC2 nc|ENSG00000166006|Q96PR1-4|KCNC2 nc|ENSG00000166006|Q96PR1-4|KCNC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.25439453125 2 565.254694 1128.49483 0.29801 0.00016845 0.29485 0.00016666 0.59286 0.00033512 565.2551868157232 87.653 0.23071 87.653 87.531 87.762 0 18 10 2 0 0 0 0.7326 1 48502 48502 1.1933 0.39971 1 557710 3174 7421 2136 2182 3621 3621 -0.06427278232695244 ASDQLYLLI 9 Unmodified _ASDQLYLLI_ 0 0 0 REV__ENST00000517567.5_1_8:33342724-33346269:+|nuORF REV__ENST00000517567.5_1_8:33342724-33346269:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2898559570312 2 518.289682 1034.56481 0.75079 0.00038913 0.2831 0.00014673 1.0339 0.00053586 518.2899924505592 80.386 0.46236 74.21 74.054 74.516 -6.1757 34 25 2 0 0 0 0.03568 1 52799 52799 52.268 6.2474 1 9290800 + 3175 28227 2137 2183 3622 3622 0.04891207383184337 ASERRKSERK 10 Unmodified _ASERRKSERK_ 0 0 0 ENST00000266744.3_1_12:103351479-103351575:+|nuORF ENST00000266744.3_1_12:103351479-103351575:+|nuORF ENST00000266744.3_1_12:103351479-103351575:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.2384338378906 3 416.237337 1245.69018 NaN NaN NaN NaN NaN NaN NaN 12.554 1 10.072 9.5716 10.572 -2.482 0 0 0 0.97855 1 6354 6354 1.4551 0 1 3176 11347 2138 2184 3623 3623 0.07716312292131988 ASFASDYLKDY 11 Unmodified _ASFASDYLKDY_ 0 0 0 REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.295654296875 2 640.295693 1278.57683 0.18486 0.00011836 0.25124 0.00016087 0.4361 0.00027923 640.2953094293575 61.06 0.19538 61.06 60.975 61.171 0 14 7 3 0 0 0 0.69316 1 34098 34098 4.897 0 1 480230 + 3177 18308 2139 2185 3624 3624 -0.05131220664270586 ASFFHLEF 8 Unmodified _ASFFHLEF_ 0 0 0 ENST00000394457.7_2_2:61415032-61415098:+|nuORF ENST00000394457.7_2_2:61415032-61415098:+|nuORF ENST00000394457.7_2_2:61415032-61415098:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.2419738769531 2 499.242535 996.470518 NaN NaN NaN NaN NaN NaN NaN 44.911 1 40.059 39.559 40.559 -4.852 0 0 0 0.57076 1 27476 27476 36.044 14.507 1 3178 12738 2140 2186 3625 3625 -0.027858866482802114 ASFLDSAN 8 Unmodified _ASFLDSAN_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.3795166015625 1 824.378474 823.371197 -0.42994 -0.00035443 0.4485 0.00036973 0.018562 1.5302E-05 824.3787839407903 48.374 0.28331 48.374 48.272 48.555 0 19 13 2 0 0 0 0.48583 1 26530 26530 36.127 0.082828 1 3135400 + 3179 23122 2141 2187 3626 3626 -0.04755329333045211 ASFLIDPA 8 Unmodified _ASFLIDPA_ 0 0 0 ENST00000336576.9_2_2:220150715-220151078:+|nuORF ENST00000336576.9_2_2:220150715-220151078:+|nuORF ENST00000336576.9_2_2:220150715-220151078:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.4395751953125 1 833.440346 832.433069 0.0091554 7.6305E-06 -0.37477 -0.00031235 -0.36561 -0.00030471 833.4402339709479 63.244 0.21497 63.244 63.146 63.361 0 12 8 2 0 0 0 0.61462 1 35274 35274 24.674 5.2349 1 689440 3180 11913 2142 2188 3627 3627 0.010150220860850823 ASFLLHTYI 9 Unmodified _ASFLLHTYI_ 0 0 0 ENST00000397861.6_1_17:54910427-54911098:-|nuORF ENST00000397861.6_1_17:54910427-54911098:-|nuORF ENST00000397861.6_1_17:54910427-54911098:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.287353515625 2 532.792392 1063.57023 0.56035 0.00029855 -1.5522 -0.00082702 -0.99189 -0.00052847 533.2945966381133 79.236 0.29515 78.75 78.574 78.87 -0.48596 18 12 2 0 0 0 0.20528 1 43329 43329 8.5933 2.2392 1 484730 3181 12834 2143 2189 3628 3628 0.040989309656424666 ASFQGTVPK 9 Unmodified _ASFQGTVPK_ 0 0 0 ENST00000311172.11_1_11:72549399-72549570:-|nuORF ENST00000311172.11_1_11:72549399-72549570:-|nuORF ENST00000311172.11_1_11:72549399-72549570:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7532958984375 2 467.753267 933.491981 1.1001 0.00051457 0.68691 0.00032131 1.787 0.00083587 467.7530139462888 20.627 0.24608 17.934 17.742 17.988 -2.693 19 14 2 0 0 0 0.28023 1 10995 10995 18.146 1.2041 1 1500400 3182 11686 2144 2190 3629 3629 0.022574983804247495 ASFTHARL 8 Unmodified _ASFTHARL_ 0 0 0 REV__ENSG00000164465|ENST00000338728|DCBLD1 REV__ENSG00000164465|ENST00000338728|DCBLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7452697753906 2 451.745776 901.477 0.73316 0.0003312 0.12342 5.5754E-05 0.85658 0.00038696 451.7460123579957 28.3 0.40604 25.152 24.952 25.358 -3.1482 32 21 2 0 0 0 0.58902 1 15763 15763 26.884 5.137 1 7641800 + 3183 21917 2145 2191 3630 3630 0.022320513030990696 ASGFFVFPY 9 Unmodified _ASGFFVFPY_ 0 0 0 ENSG00000181617|ENST00000317987|FDCSP ENSG00000181617|ENST00000317987|FDCSP ENSG00000181617|ENST00000317987|FDCSP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2742309570312 2 517.752736 1033.49092 -0.47179 -0.00024427 0.0041277 2.1371E-06 -0.46766 -0.00024213 517.753933337028 55.408 0.22512 55.408 55.327 55.552 0 24 9 4 0 0 0 0.19298 1 30809 30809 13.508 0 1 1096900 3184 8981 2146 2192 3631 3631 -0.024487159884756693 ASGIPAPKMT 10 Unmodified _ASGIPAPKMT_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20221201_MKP_PDAC_01 4 487.239501953125 2 486.762778 971.511002 NaN NaN NaN NaN NaN NaN NaN 33.291 1 29.306 28.806 29.806 -3.9853 0 0 0 0.68942 1 19083 19083 17.113 6.9295 1 3185 5494 2147 2193 3632 3632 0.024107116798290917 ASGLARRADAL 11 Unmodified _ASGLARRADAL_ 0 0 0 REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.2648315429688 2 550.812179 1099.60981 0.23153 0.00012753 1.2575 0.00069267 1.4891 0.0008202 550.8129839929701 39.892 0.32198 35.362 35.155 35.477 -4.5294 36 21 2 0 0 0 0.27644 1 23777 23777 12.175 1.3752 1 33433000 + 3186 27669 2148 2194 3633 3633 0.06398450969072655 ASGPLQKL 8 Unmodified _ASGPLQKL_ 0 0 0 REV__ENST00000378752.7_1_10:13142270-13150258:+|nuORF REV__ENST00000378752.7_1_10:13142270-13150258:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.8626708984375 2 407.245078 812.475603 0.68767 0.00028005 -0.050548 -2.0585E-05 0.63712 0.00025946 407.24498375168764 38.401 0.38272 34.032 33.814 34.197 -4.3689 39 23 2 0 0 0 8.7369 1 22629 22629 4.756 0.42677 1 19821000 + 3187 25037 2149 2195 3634 3634 0.06186417214314588 ASGVIVCR 8 Unmodified _ASGVIVCR_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.4366455078125 1 804.439634 803.432358 0.27853 0.00022406 -3.2502 -0.0026146 -2.9717 -0.0023905 804.4366326781469 45.893 0.25175 45.893 45.722 45.974 0 17 12 2 0 0 0 0.40035 1 25011 25011 44.407 6.2558 1 4479900 + 3188 20484 2150 2196 3635 3635 0.02277904165396194 ASGWGCCFS 9 Unmodified _ASGWGCCFS_ 0 0 0 ENST00000327247.9_1_1:155210492-155214452:-|nuORF;ENST00000493842.5_1_1:155214021-155214347:-|nuORF;ENST00000467918.5_1_1:155213976-155214347:-|nuORF ENST00000327247.9_1_1:155210492-155214452:-|nuORF ENST00000327247.9_1_1:155210492-155214452:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7587585449219 2 459.167656 916.320759 -0.079389 -3.6453E-05 -2.6187 -0.0012024 -2.6981 -0.0012389 459.16685524358167 28.761 0.42069 28.761 28.662 29.082 0 31 20 3 0 0 0 0.19613 1 14994 14994 7.9102 2.1497 1 1736700 3189 11824 2151 2197 3636 3636 -0.1407489825404582 ASHCARGRHR 10 Unmodified _ASHCARGRHR_ 0 0 0 ENST00000524821.5_2_8:145752004-145752448:-|nuORF ENST00000524821.5_2_8:145752004-145752448:-|nuORF ENST00000524821.5_2_8:145752004-145752448:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1967468261719 3 384.196818 1149.56863 NaN NaN NaN NaN NaN NaN NaN 14.673 1 14.673 14.173 15.173 0 0 0 0 0.97592 1 6995 6995 1.5923 0.11038 1 3190 14786 2152 2198 3637 3637 -0.0001758855137268256 ASHDETWE 8 Unmodified _ASHDETWE_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.6954956054688 2 487.696146 973.377739 0.80197 0.00039112 -1.8659 -0.00090998 -1.0639 -0.00051886 487.69573561933794 82.065 0.35031 81.57 81.369 81.72 -0.4952 16 13 2 0 0 0 0.80992 1 44977 44977 0.69038 0.16561 1 375850 + 3191 21060 2153 2199 3638 3638 -0.11001436172330159 ASHIEVSYWP 10 Unmodified _ASHIEVSYWP_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2852783203125 2 594.787838 1187.56112 0.3339 0.0001986 -2.0476 -0.0012179 -1.7137 -0.0010193 594.7865398123789 53.409 0.11586 53.409 53.304 53.42 0 7 4 2 0 0 0 0.22327 1 29585 29585 19.257 2.1441 1 1173800 + 3192 19573 2154 2200 3639 3639 -0.02515462390670109 ASILAPGTHPP 11 Unmodified _ASILAPGTHPP_ 0 0 0 REV__ENSG00000131067|ENST00000336431|GGT7 REV__ENSG00000131067|ENST00000336431|GGT7 MSMS AL20221201_MKP_PDAC_01 4 530.7933349609375 2 530.792924 1059.57129 NaN NaN NaN NaN NaN NaN NaN 87.54 1 81.365 80.865 81.865 -6.1757 0 0 0 0.057868 1 57732 57732 60.074 6.2411 1 + 3193 19767 2155 2201 3640 3640 0.04389145334562272 ASKALRVP 8 Unmodified _ASKALRVP_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2689514160156 2 421.266345 840.518136 1.8499 0.00077931 4.3591 0.0018364 6.2091 0.0026157 421.2678739485536 98.24 0.11668 92.064 91.985 92.102 -6.1757 13 7 2 0 0 0 0.58902 1 65158 65158 26.884 5.137 1 17950000 3194 6171 2156 2202 3641 3641 0.09149812342548103 ASKELHQF 8 Unmodified _ASKELHQF_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2 REV__ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2497863769531 2 480.250892 958.48723 -0.2945 -0.00014144 -0.48355 -0.00023223 -0.77806 -0.00037366 480.25068301397766 25.949 0.16465 25.949 25.862 26.026 0 11 7 2 0 0 0 0.26367 1 13323 13323 60.074 0 1 733180 + 3195 21437 2157 2203 3642 3642 0.006326142376678945 ASKGSSPTWTF 11 Unmodified _ASKGSSPTWTF_ 0 0 0 REV__nc|ENSG00000211890|P01877-1|IGHA2 REV__nc|ENSG00000211890|P01877-1|IGHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7843017578125 2 584.785296 1167.55604 0.039015 2.2815E-05 -0.57823 -0.00033814 -0.53922 -0.00031533 584.7847554347117 64.922 0.37997 64.922 64.672 65.052 0 36 17 3 0 0 0 0.6889 1 36150 36150 5.2969 0.39987 1 5019600 + 3196 29931 2158 2204 3643 3643 -0.021037662532989998 ASLALDALL 9 Unmodified _ASLALDALL_ 0 0 0 REV__ENSG00000138111|ENST00000238936|MFSD13A REV__ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7661437988281 2 443.765843 885.517133 -0.15503 -6.8796E-05 0.96971 0.00043032 0.81468 0.00036153 443.76620158476277 69.781 0.36365 69.302 69.109 69.472 -0.47903 46 15 4 0 0 0 0.016184 1 38179 38179 67.344 0 1 10229000 + 3197 20304 2159 2205 3644 3644 0.06979553183009557 ASLALDALL 9 Unmodified _ASLALDALL_ 0 0 0 REV__ENSG00000138111|ENST00000238936|MFSD13A REV__ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7655334472656 2 443.765843 885.517133 0.5476 0.00024301 -0.36326 -0.0001612 0.18434 8.1803E-05 443.7658739774294 76.608 0.63451 70.433 70.146 70.78 -6.1757 65 33 3 0 0 0 0.016184 1 50119 50119 67.344 6.9543 1 56932000 + 3198 20304 2159 2205 3645 3645 0.06979553183009557 ASLDLIFNEI 10 Unmodified _ASLDLIFNEI_ 0 0 0 REV__ENST00000293618.12_1_12:50870331-50870427:+|nuORF REV__ENST00000293618.12_1_12:50870331-50870427:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8726806640625 3 378.87289 1133.59684 0.14632 5.5437E-05 -0.65401 -0.00024779 -0.50769 -0.00019235 378.87274510044665 31.426 0.24498 31.426 31.296 31.541 0 22 11 3 0 0 0 0.56348 1 16357 16357 11.518 4.4162 1 3975800 + 3199 25249 2160 2206 3646 3646 0.035385750663408544 ASLLRGLWTL 10 Unmodified _ASLLRGLWTL_ 0 0 0 REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5 REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3409423828125 2 565.340041 1128.66553 0.66498 0.00037594 1.0388 0.00058728 1.7038 0.00096322 565.3407197524768 67.926 0.29343 67.951 67.794 68.088 0.025146 34 13 3 0 0 0 0.1028 1 37281 37281 45.7 5.7499 1 4508400 + 3200 23523 2161 2207 3647 3647 0.1063428415668568 ASLRNVCISL 10 Unmodified _ASLRNVCISL_ 0 0 0 nc|ENSG00000183704|A6NJY1|SLC9B1P1 nc|ENSG00000183704|A6NJY1|SLC9B1P1 nc|ENSG00000183704|A6NJY1|SLC9B1P1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2030029296875 3 359.202465 1074.58556 1.8319 0.00065802 -1.1544 -0.00041465 0.67753 0.00024337 359.20214896680835 47.34 0.32053 42.26 42.112 42.432 -5.0805 36 19 3 0 0 0 0.69385 1 29351 29351 3.5871 0 1 14040000 3201 16451 2162 2208 3648 3648 0.05125474491228488 ASLVHDAY 8 Unmodified _ASLVHDAY_ 0 0 0 FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2172241210938 2 438.216517 874.418482 -0.19724 -8.6432E-05 -0.68345 -0.0002995 -0.88069 -0.00038593 438.2162128215897 24.235 0.32675 24.235 24.078 24.405 0 66 20 4 0 0 0 0.37649 1 12332 12332 46.921 12.818 1 39043000 3202 15897 2163 2209 3649 3649 -0.02375050062050832 ASLVHDAY 8 Unmodified _ASLVHDAY_ 0 0 0 FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2154235839844 2 438.216517 874.418482 0.60457 0.00026493 -0.58025 -0.00025427 0.02432 1.0657E-05 438.216192690715 27.325 0.50041 24.288 24.04 24.541 -3.0365 65 24 4 0 0 0 0.37649 1 15032 15032 46.921 4.8263 1 204830000 3203 15897 2163 2209 3650 3650 -0.02375050062050832 ASLVHDAY 8 Unmodified _ASLVHDAY_ 0 0 0 FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant FTSJ3|p.W126L|1|0.16|ENSG00000108592|chr17:63825559-63825559|C/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 438.216517 874.418482 0.41916 0.00018368 0.5425 0.00023773 0.96165 0.00042141 438.2165476736982 24.172 0.14767 24.193 24.118 24.265 0.021185 -0.045734 0.00098699 NaN 46.921 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2225700 3204 15897 2163 2209 -0.02375050062050832 ASMNPTWGMQ 10 Unmodified _ASMNPTWGMQ_ 0 0 0 REV__ENSG00000145743|ENST00000542267|FBXL17 REV__ENSG00000145743|ENST00000542267|FBXL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7388916015625 2 561.738976 1121.4634 0.97873 0.00054979 -1.5228 -0.0008554 -0.54404 -0.00030561 561.737896713116 91.156 0.51199 84.98 84.74 85.252 -6.1757 73 29 3 0 0 0 0.60478 1 60325 60325 17.113 3.2068 1 41492000 + 3205 20793 2164 2210 3651 3651 -0.09247310582668433 ASMSEEQRKEY 11 Unmodified _ASMSEEQRKEY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.5422973632812 3 453.206603 1356.59798 0.91464 0.00041452 0.21867 9.9101E-05 1.1333 0.00051362 453.5409835001226 47.832 0.25088 47.832 47.665 47.916 0 20 11 2 0 0 0 0.71341 1 26172 26172 1.2148 0 1 5498500 3206 410 2165 2211 3652 3652 -0.06605578627068098 ASMTFIPQYG 10 Unmodified _ASMTFIPQYG_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7627563476562 2 557.765517 1113.51648 NaN NaN NaN NaN NaN NaN NaN 32.479 1 32.479 31.979 32.979 0 0 0 0 0.64375 1 16970 16970 19.257 4.4187 1 + 3207 21250 2166 2212 3653 3653 -0.03573609528348243 ASMWFKML 8 Unmodified _ASMWFKML_ 0 0 0 REV__nc|ENSG00000114859|P51788-4|CLCN2 REV__nc|ENSG00000114859|P51788-4|CLCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2523498535156 2 507.250991 1012.48743 0.098976 5.0206E-05 1.0764 0.00054601 1.1754 0.00059622 507.25192554298945 56.348 0.24781 56.348 56.247 56.495 0 14 11 2 0 0 0 0.77907 1 31359 31359 10.183 1.5901 1 2007800 + 3208 18938 2167 2213 3654 3654 -0.01831425358341221 ASNQNFSMDY 10 Unmodified _ASNQNFSMDY_ 0 0 0 REV__ENSG00000197343|ENST00000252713|ZNF655 REV__ENSG00000197343|ENST00000252713|ZNF655 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2071838378906 3 392.825722 1175.45534 -0.66215 -0.00026011 -1.5522 -0.00060976 -2.2144 -0.00086987 392.82552848877157 34.001 0.17628 34.001 33.888 34.065 0 11 8 2 0 0 0 0.23922 1 17811 17811 0.69767 0 1 3065800 + 3209 23917 2168 2214 3655 3655 -0.1253716629844348 ASPARAAF 8 Unmodified _ASPARAAF_ 0 0 0 ENST00000484523.1_1_11:2335717-2337299:+|nuORF;ENST00000461200.5_1_11:2336930-2337299:+|nuORF ENST00000484523.1_1_11:2335717-2337299:+|nuORF ENST00000484523.1_1_11:2335717-2337299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.7142944335938 2 395.713945 789.413337 0.43967 0.00017398 0.10779 4.2656E-05 0.54746 0.00021664 395.7139614082051 49.645 0.28292 49.645 49.51 49.793 0 18 12 2 0 0 0 0.74163 1 27340 27340 13.508 0.97634 1 3433800 3210 13655 2169 2215 3656 3656 0.010206908659824876 ASPCCGCC 8 Unmodified _ASPCCGCC_ 0 0 0 ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-3|IL4R ENSG00000077238|ENST00000395762|IL4R ENSG00000077238|ENST00000395762|IL4R MSMS AL20221201_MKP_PDAC_01 4 371.8937072753906 2 372.102613 742.190672 NaN NaN NaN NaN NaN NaN NaN 87.875 1 81.7 81.2 82.2 -6.1757 0 0 0 0.97444 1 57960 57960 0.79363 0 1 3211 1210 2170 2216 3657 3657 -0.19073533849064006 ASPFSDPFQL 10 Unmodified _ASPFSDPFQL_ 0 0 0 nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;ENST00000589851.1_1_19:5219319-5220009:-|nuORF nc|ENSG00000105426|Q13332-3|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.770751953125 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 66.52 1 66.52 66.02 67.02 0 0 0 0 0.96981 1 37100 37100 3.9444 0 1 3212 2319 2171 2217 3658 3658 -0.025785536562807465 ASPLVHRR 8 Unmodified _ASPLVHRR_ 0 0 0 ENSG00000143603|ENST00000271915|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2808227539062 2 468.280318 934.546083 NaN NaN NaN NaN NaN NaN NaN 76.831 1 76.831 76.331 77.331 0 0 0 0 0.90769 1 42711 42711 18.135 2.2878 1 3213 5532 2172 2218 3659 3659 0.07619135322647708 ASPPRQASPDL 11 Unmodified _ASPPRQASPDL_ 0 0 0 ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5369873046875 3 380.199889 1137.57784 0.76838 0.00029214 -2.368 -0.00090032 -1.5996 -0.00060819 380.1964248877127 22.745 0.69185 19.966 19.613 20.305 -2.7784 177 45 6 0 0 0 0.65108 1 12241 12241 4.4062 0 1 317640000 3214 6792 2173 2219 3660 3660 0.01455038495282679 ASPRRDPPA 9 Unmodified _ASPRRDPPA_ 0 0 0 REV__ENST00000330817.10_1_22:50297886-50298133:-|nuORF REV__ENST00000330817.10_1_22:50297886-50298133:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.3065795898438 2 483.759415 965.504277 0.25023 0.00012105 -0.67633 -0.00032718 -0.4261 -0.00020613 483.75930609310177 23.692 0.29817 20.864 20.726 21.024 -2.8273 28 18 2 0 0 0 0.19205 1 12796 12796 10.074 10.074 1 4026100 + 3215 25596 2174 2220 3661 3661 0.020145348434652988 ASQERAQVAF 10 Unmodified _ASQERAQVAF_ 0 0 0 ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF ENSG00000215421|ENST00000299687|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.7850952148438 2 553.783087 1105.55162 NaN NaN NaN NaN NaN NaN NaN 45.919 1 45.891 45.391 46.391 -0.028011 0 0 0 0.71157 1 24690 24690 16.149 2.2431 1 3216 10530 2175 2221 3662 3662 0.0030676932381084043 ASQLCGPTQL 10 Unmodified _ASQLCGPTQL_ 0 0 0 REV__ENST00000558767.5_1_15:80445344-80452198:+|nuORF REV__ENST00000558767.5_1_15:80445344-80452198:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2539672851562 2 509.255317 1016.49608 -0.037943 -1.9323E-05 -1.3959 -0.00071087 -1.4338 -0.00073019 509.25458350233515 23.109 0.20806 23.109 22.974 23.182 0 19 10 2 0 0 0 0.65773 1 11747 11747 7.609 7.609 1 762770 + 3217 28806 2176 2222 3663 3663 -0.011507801881634805 ASQYEWQF 8 Unmodified _ASQYEWQF_ 0 0 0 REV__ENSG00000171657|ENST00000302548|GPR82 REV__ENSG00000171657|ENST00000302548|GPR82 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7339477539062 2 529.732532 1057.45051 NaN NaN NaN NaN NaN NaN NaN 76.741 1 76.741 76.241 77.241 0 0 0 0 0.97444 1 42662 42662 2.8892 0 1 + 3218 22586 2177 2223 3664 3664 -0.0759168237891572 ASRGECEYRF 10 Unmodified _ASRGECEYRF_ 0 0 0 REV__ENSG00000104856|ENST00000221452|RELB REV__ENSG00000104856|ENST00000221452|RELB MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5171508789062 3 406.517112 1216.52951 0.12523 5.0907E-05 0.0043395 1.7641E-06 0.12957 5.2672E-05 406.5170115137909 25.202 0.26341 22.319 22.219 22.482 -2.8831 34 21 2 0 0 0 0.69377 1 13860 13860 1.7423 0 1 7636000 + 3219 18379 2178 2224 3665 3665 -0.07009778416295376 ASRGKKLK 8 Unmodified _ASRGKKLK_ 0 0 0 ENST00000608501.5_1_2:91816838-91843483:-|nuORF ENST00000608501.5_1_2:91816838-91843483:-|nuORF ENST00000608501.5_1_2:91816838-91843483:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 444.2962951660156 2 444.292894 886.571235 NaN NaN NaN NaN NaN NaN NaN 105.74 1 99.564 99.064 100.06 -6.1757 0 0 0 0.97444 1 70828 70828 0.6015 0.6015 1 3220 15870 2179 2225 3666 3666 0.12341190125209778 ASRLDRMEL 9 Unmodified _ASRLDRMEL_ 0 0 0 REV__ENST00000523891.1_1_8:144371924-144373003:+|nuORF REV__ENST00000523891.1_1_8:144371924-144373003:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2907104492188 2 545.787315 1089.56008 0.75173 0.00041028 4.3946 0.0023985 5.1463 0.0028088 546.2896527969664 58.137 0.19968 58.076 57.995 58.195 -0.060719 12 9 2 0 0 0 0.47846 1 31681 31681 8.7454 0 1 4760900 + 3221 28323 2180 2226 3667 3667 0.018879999687896998 ASRLLDLITW 10 Unmodified _ASRLLDLITW_ 0 0 0 ENSG00000050165|ENST00000683431|DKK3 ENSG00000050165|ENST00000683431|DKK3 ENSG00000050165|ENST00000683431|DKK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.3427124023438 2 594.342781 1186.67101 -0.045517 -2.7053E-05 0.86327 0.00051308 0.81776 0.00048603 594.3432241521252 69.684 0.3592 69.205 69.042 69.401 -0.47903 36 15 3 0 0 0 0.46077 1 38071 38071 18.373 7.5736 1 1708300 3222 719 2181 2227 3668 3668 0.08513962948518383 ASRLLDLITW 10 Unmodified _ASRLLDLITW_ 0 0 0 ENSG00000050165|ENST00000683431|DKK3 ENSG00000050165|ENST00000683431|DKK3 ENSG00000050165|ENST00000683431|DKK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3435668945312 2 594.342781 1186.67101 0.36604 0.00021755 0.31759 0.00018876 0.68363 0.00040631 594.3429847247635 69.194 0.34268 69.225 68.99 69.333 0.030914 48 16 4 0 0 0 0.40046 1 37972 37972 21.59 5.743 1 13067000 3223 719 2181 2227 3669 3669 0.08513962948518383 ASRTQVQNY 9 Unmodified _ASRTQVQNY_ 0 0 0 REV__ENSG00000204219|ENST00000450454|TCEA3 REV__ENSG00000204219|ENST00000450454|TCEA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2720336914062 2 533.767437 1065.52032 0.81552 0.0004353 -3.3369 -0.0017811 -2.5214 -0.0013458 533.7663142616415 50.475 0.16182 50.062 49.951 50.112 -0.41322 11 7 2 0 0 0 0.15672 1 27177 27177 26.884 3.7352 1 3847000 + 3224 24147 2182 2228 3670 3670 -0.009818037103059396 ASSAPASIDPF 11 Unmodified _ASSAPASIDPF_ 0 0 0 REV__MYRF|p.P178Tfs*50|1|0.05|ENSG00000124920|chr11:61770316-61770317|-/A|frameshift_variant REV__MYRF|p.P178Tfs*50|1|0.05|ENSG00000124920|chr11:61770316-61770317|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7578125 2 531.758746 1061.50294 -0.24756 -0.00013164 -1.5064 -0.00080102 -1.7539 -0.00093267 531.758116771783 48.506 0.22635 48.506 48.373 48.6 0 15 10 2 0 0 0 0.16973 1 26634 26634 34.402 5.9149 1 2153400 + 3225 19473 2183 2229 3671 3671 -0.02535144035960002 ASSAPASIDPF 11 Unmodified _ASSAPASIDPF_ 0 0 0 REV__MYRF|p.P178Tfs*50|1|0.05|ENSG00000124920|chr11:61770316-61770317|-/A|frameshift_variant REV__MYRF|p.P178Tfs*50|1|0.05|ENSG00000124920|chr11:61770316-61770317|-/A|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.275146484375 2 531.758746 1061.50294 -0.24756 -0.00013164 -1.5064 -0.00080102 -1.7539 -0.00093267 531.758116771783 48.506 0.22635 48.506 48.373 48.6 0 15 10 2 0 0 0 0.26469 1 26584 26584 20.415 11.067 1 2153400 + 3226 19473 2183 2229 3672 3672 -0.02535144035960002 ASSHTGVYIF 10 Unmodified _ASSHTGVYIF_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.271240234375 2 541.269281 1080.52401 NaN NaN NaN NaN NaN NaN NaN 34.404 1 34.213 33.713 34.713 -0.19131 0 0 0 0.96981 1 17969 17969 3.9444 0.3479 1 3227 9420 2184 2230 3673 3673 -0.013031339364488304 ASSINSHLPP 10 Unmodified _ASSINSHLPP_ 0 0 0 ENSG00000105880|ENST00000648378|DLX5 ENSG00000105880|ENST00000648378|DLX5 ENSG00000105880|ENST00000648378|DLX5 MSMS AL20221201_MKP_PDAC_01 4 511.7664489746094 2 511.766906 1021.51926 NaN NaN NaN NaN NaN NaN NaN 77.018 1 70.843 70.343 71.343 -6.1757 0 0 0 0.57227 1 50372 50372 22.736 3.4793 1 3228 2376 2185 2231 3674 3674 0.009359819208043518 ASSLLAHPAL 10 Unmodified _ASSLLAHPAL_ 0 0 0 ENST00000471370.5_1_12:58007928-58008279:+|nuORF ENST00000471370.5_1_12:58007928-58008279:+|nuORF ENST00000471370.5_1_12:58007928-58008279:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7837524414062 2 490.282192 978.549831 1.3899 0.00068146 -0.31326 -0.00015359 1.0767 0.00052787 490.2820825395079 58.67 0.51789 52.595 52.299 52.817 -6.0745 35 28 2 0 0 0 0.35903 1 37639 37639 24.021 2.4836 1 11614000 3229 13870 2186 2232 3675 3675 0.059697603058339155 ASSLLVPL 8 Unmodified _ASSLLVPL_ 0 0 0 REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF REV__ENST00000359534.3_1_6:39158079-39158430:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2501525878906 2 400.249829 798.485105 0.3699 0.00014805 1.9572 0.00078337 2.3271 0.00093142 400.2508835629219 63.253 0.32652 62.766 62.622 62.948 -0.48617 23 14 2 0 0 0 0.77907 1 34507 34507 10.183 0 1 1295000 + 3230 25892 2187 2233 3676 3676 0.07780185499859726 ASSSMSCRY 9 Unmodified _ASSSMSCRY_ 0 0 0 REV__ENSG00000151914|ENST00000680361|DST;REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF REV__ENSG00000151914|ENST00000680361|DST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7330017089844 2 496.202227 990.389901 0.49606 0.00024615 -3.5067 -0.00174 -3.0106 -0.0014939 496.20031388906204 49.936 0.17518 49.936 49.834 50.009 0 13 7 2 0 0 0 0.19891 1 27450 27450 11.64 4.3511 1 1949700 + 3231 21097;28236 2188 2234 3677 3677 -0.1056785902513866 ASSTDTQDDRL 11 Unmodified _ASSTDTQDDRL_ 0 0 0 REV__ENSG00000198879|ENST00000397167|SFMBT2 REV__ENSG00000198879|ENST00000397167|SFMBT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5195007324219 3 403.517834 1207.53167 0.5549 0.00022391 -0.39855 -0.00016082 0.15635 6.3089E-05 403.5176957943383 27.554 0.30533 24.517 24.375 24.68 -3.0365 28 14 2 0 0 0 0.69316 1 15241 15241 2.2527 0 1 17045000 + 3232 24088 2189 2235 3678 3678 -0.06379071197466146 ASSVFDVSRAL 11 Unmodified _ASSVFDVSRAL_ 0 0 0 REV__nc|ENSG00000126106|Q6P2H8-2|TMEM53 REV__nc|ENSG00000126106|Q6P2H8-2|TMEM53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5400695800781 3 384.540022 1150.59824 0.040374 1.5526E-05 2.1319 0.00081979 2.1722 0.00083531 384.54035978196623 28.887 0.544 28.917 28.73 29.274 0.030106 45 22 3 0 0 0 0.65846 1 15113 15113 4.1166 0 1 3689800 + 3233 19539 2190 2236 3679 3679 0.028962091551193225 ASTDGKVWIL 10 Unmodified _ASTDGKVWIL_ 0 0 0 nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH nc|ENSG00000157426|Q4L235-2|AASDH nc|ENSG00000157426|Q4L235-2|AASDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3023681640625 2 545.300581 1088.58661 NaN NaN NaN NaN NaN NaN NaN 70.588 1 70.111 69.611 70.611 -0.47735 0 0 0 0.76313 1 38619 38619 13.906 1.3745 1 3234 6518 2191 2237 3680 3680 0.0458601213174461 ASTEFYPIGY 10 Unmodified _ASTEFYPIGY_ 0 0 0 REV__nc|ENSG00000069974|P51159-2|RAB27A REV__nc|ENSG00000069974|P51159-2|RAB27A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1834411621094 3 383.181723 1146.52334 NaN NaN NaN NaN NaN NaN NaN 25.154 1 25.154 24.654 25.654 0 0 0 0 0.98914 1 12885 12885 0.77653 0 1 + 3235 17197 2192 2238 3681 3681 -0.044059733761287134 ASTSSEHF 8 Unmodified _ASTSSEHF_ 0 0 0 ENST00000428120.5_1_1:2116719-2117614:-|nuORF ENST00000428120.5_1_1:2116719-2117614:-|nuORF ENST00000428120.5_1_1:2116719-2117614:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.5233764648438 2 433.187957 864.361361 NaN NaN NaN NaN NaN NaN NaN 15.927 1 13.37 12.87 13.87 -2.557 0 0 0 0.97348 1 8215 8215 5.7604 1.4312 1 3236 13207 2193 2239 3682 3682 -0.07624517338410897 ASVALHRL 8 Unmodified _ASVALHRL_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7641906738281 2 433.763969 865.513385 0.094944 4.1183E-05 0.10983 4.7642E-05 0.20478 8.8825E-05 433.7640555185764 25.239 0.30277 22.356 22.228 22.531 -2.8831 44 22 3 0 0 0 0.18875 1 13882 13882 74.423 3.2892 1 10756000 3237 10222 2194 2240 3683 3683 0.07524928199791248 ASVCYLDMEA 10 Unmodified _ASVCYLDMEA_ 0 0 0 ENST00000373479.8_1_6:37321761-37321914:+|nuORF ENST00000373479.8_1_6:37321761-37321914:+|nuORF ENST00000373479.8_1_6:37321761-37321914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.234375 2 551.233193 1100.45183 0.39681 0.00021873 0.24734 0.00013634 0.64415 0.00035508 551.2337133720953 76.382 0.53375 76.382 76.174 76.708 0 67 21 4 0 0 0 0.54684 1 42513 42513 13.906 2.2658 1 4631600 3238 12415 2195 2241 3684 3684 -0.09437552396661886 ASVDHKSS 8 Unmodified _ASVDHKSS_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7346496582031 2 415.703774 829.392996 0.46397 0.00019288 3.8438 0.0015979 4.3078 0.0017908 415.7052264675824 53.99 0.086514 53.99 53.945 54.032 0 5 3 2 0 0 0 8.7369 1 29935 29935 19.439 0 1 739010 + 3239 19593 2196 2242 3685 3685 -0.028525245844662095 ASVGTGIVL 9 Unmodified _ASVGTGIVL_ 0 0 0 REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF REV__ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.4828491210938 1 816.482545 815.475269 0.37357 0.00030501 0.41901 0.00034211 0.79258 0.00064713 816.4828359133795 49.522 0.21241 49.522 49.416 49.629 0 14 8 2 0 0 0 0.031062 1 27242 27242 54.774 6.4277 1 1910600 + 3240 18055 2197 2243 3686 3686 0.060149974944692985 ASVKLRRQAE 10 Unmodified _ASVKLRRQAE_ 0 0 0 ENST00000434773.1_3_Y:14655122-14656805:+|nuORF ENST00000434773.1_3_Y:14655122-14656805:+|nuORF ENST00000434773.1_3_Y:14655122-14656805:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5635681152344 3 386.563161 1156.66765 -0.054246 -2.097E-05 1.0147 0.00039223 0.96041 0.00037126 386.56355391698935 33.246 0.31815 33.275 33.093 33.411 0.028934 24 13 2 0 0 0 0.71042 1 17530 17530 1.7423 0.52744 1 7767400 3241 13304 2198 2244 3687 3687 0.09558712894545351 ASVNIFHS 8 Unmodified _ASVNIFHS_ 0 0 0 ENSG00000223611|ENST00000486479|SUPT20HL2;nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1 ENSG00000223611|ENST00000486479|SUPT20HL2;nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 ENSG00000223611|ENST00000486479|SUPT20HL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7244873046875 2 437.72451 873.434466 NaN NaN NaN NaN NaN NaN NaN 31.039 1 31.039 30.539 31.539 0 0 0 0 0.94061 1 16153 16153 12.532 1.4171 1 3242 10573;10575 2199 2245 3688 3688 -0.0073134382514581375 ASVPEVFTFI 10 Unmodified _ASVPEVFTFI_ 0 0 0 REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7694702148438 2 555.297507 1108.58046 0.33712 0.0001872 -3.2156 -0.0017856 -2.8785 -0.0015984 555.2959693288984 40.19 0.22473 40.19 40.089 40.314 0 20 10 3 0 0 0 0.22811 1 21651 21651 14.838 5.4551 1 2626400 + 3243 20115 2200 2246 3689 3689 0.03051493900238711 ASVTVSMPHAV 11 Unmodified _ASVTVSMPHAV_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1929016113281 3 366.858586 1097.55393 1.8074 0.00066308 -1.0502 -0.00038528 0.75723 0.0002778 366.8582742657461 21.009 0.54084 18.316 18.036 18.577 -2.693 116 31 5 0 0 0 0.65108 1 11315 11315 4.4062 0 1 171810000 + 3244 17994 2201 2247 3690 3690 0.009054817372316393 ASWFPGCHF 9 Unmodified _ASWFPGCHF_ 0 0 0 ENST00000369443.9_1_1:118413138-118413189:-|nuORF ENST00000369443.9_1_1:118413138-118413189:-|nuORF ENST00000369443.9_1_1:118413138-118413189:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2281494140625 2 526.226362 1050.43817 NaN NaN NaN NaN NaN NaN NaN 21.434 1 21.434 20.934 21.934 0 0 0 0 0.6306 1 10845 10845 11.64 0.81637 1 3245 12305 2202 2248 3691 3691 -0.08502997322943884 ASWQYHQFF 9 Unmodified _ASWQYHQFF_ 0 0 0 REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1851806640625 3 405.185691 1212.53524 -0.48291 -0.00019567 -0.77262 -0.00031305 -1.2555 -0.00050872 405.18551930185737 20.653 0.32593 20.653 20.473 20.799 0 73 24 4 0 0 0 0.58865 1 10432 10432 1.0715 0.29493 1 3890300 + 3246 26998 2203 2249 3692 3692 -0.062523118423087 ASWQYHQFF 9 Unmodified _ASWQYHQFF_ 0 0 0 REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 405.185691 1212.53524 -0.34082 -0.00013809 -0.47272 -0.00019154 -0.81354 -0.00032963 405.18550163194385 20.548 0.28523 20.577 20.401 20.686 0.028355 -0.038255 0.00027205 NaN 1.0715 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 904010 + 3247 26998 2203 2249 -0.062523118423087 ASYDVEMKVIR 11 Unmodified _ASYDVEMKVIR_ 0 0 0 REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.5641174316406 3 437.56395 1309.67002 0.76577 0.00033507 -0.71036 -0.00031083 0.055403 2.4242E-05 437.56384257738506 81.124 0.46679 80.632 80.443 80.91 -0.49247 73 27 3 0 0 0 0.57006 1 44485 44485 12.856 0 1 9989700 + 3248 23904 2204 2250 3693 3693 0.027573805173005894 ASYDVEMKVIR 11 Unmodified _ASYDVEMKVIR_ 0 0 0 REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.56396484375 3 437.56395 1309.67002 0.30932 0.00013535 -0.1278 -5.5923E-05 0.18152 7.9426E-05 437.56400074760137 80.186 0.80836 80.244 80.004 80.812 0.057587 120 37 4 0 0 0 0.57006 2 44349 44247;44349 12.856 2.5407 1 91557000 + 3249 23904 2204 2250 3694;3695 3695 0.027573805173005894 ASYDVEMKVIR 11 Unmodified _ASYDVEMKVIR_ 0 0 0 REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF REV__ENST00000581618.1_1_17:65346414-65362695:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.8986511230469 3 437.56395 1309.67002 0.30932 0.00013535 -0.1278 -5.5923E-05 0.18152 7.9426E-05 437.56400074760137 80.186 0.80836 80.244 80.004 80.812 0.057587 120 37 4 0 0 0 0.29699 1 44247 44247 11.065 2.3135 1 91557000 + 3250 23904 2204 2250 3696 3696 0.027573805173005894 ASYELFWYTH 10 Unmodified _ASYELFWYTH_ 0 0 0 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.795654296875 2 658.800946 1315.58734 -0.52454 -0.00034557 -3.6835 -0.0024267 -4.208 -0.0027723 659.30118700173 77.398 0.23263 76.915 76.765 76.998 -0.4826 15 10 2 0 0 0 0.67033 1 42357 42357 6.2058 2.2614 1 1829800 3251 1134 2205 2251 3697 3697 -0.0578319321921299 ASYFLEMFLVL 11 Unmodified _ASYFLEMFLVL_ 0 0 0 REV__ENST00000216277.12_1_14:97032044-97032281:+|nuORF REV__ENST00000216277.12_1_14:97032044-97032281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.8483276367188 2 666.84905 1331.68355 0.7701 0.00051354 -0.8649 -0.00057676 -0.094807 -6.3222E-05 666.8484725041753 50.526 0.26022 44.987 44.791 45.051 -5.5391 20 16 2 0 0 0 0.58219 1 31751 31751 12.241 4.0851 1 13552000 + 3252 24737 2206 2252 3698 3698 0.030972382965273937 ASYPEPPGYTF 11 Unmodified _ASYPEPPGYTF_ 0 0 0 ENSG00000155875|ENST00000380534|SAXO1 ENSG00000155875|ENST00000380534|SAXO1 ENSG00000155875|ENST00000380534|SAXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.7810668945312 2 614.779679 1227.5448 0.45517 0.00027983 0.60757 0.00037352 1.0627 0.00065335 614.780281538844 100.23 0.099388 100.07 100.01 100.11 -0.1575 6 3 2 0 0 0 0.68427 1 54721 54721 5.7319 1.4026 1 999410 3253 6412 2207 2253 3699 3699 -0.059865883474458315 ATADYICKV 9 Carbamidomethyl (C) _ATADYIC(Carbamidomethyl (C))KV_ ATADYIC(1)KV ATADYIC(60)KV 0 1 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20221201_MKP_PDAC_01 4 520.7584228515625 2 520.757692 1039.50083 NaN NaN NaN NaN NaN NaN NaN 40.689 1 36.16 35.66 36.66 -4.5294 0 0 0 0.044471 1 24332 24332 60.074 10.141 1 3254 4331 2208 2254 3700 3700 436 -0.017338960454253538 ATAERGEEMTF 11 Unmodified _ATAERGEEMTF_ 0 0 0 ENSG00000154654|ENST00000400546|NCAM2;nc|ENSG00000154654|O15394-2|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 620.8271484375 2 621.276977 1240.5394 1.1338 0.00070442 -0.05905 -3.6686E-05 1.0748 0.00066773 621.2748486930457 58.482 0.39795 52.408 52.2 52.598 -6.0745 36 21 3 0 0 0 0.27931 1 37400 37400 14.405 2.2306 1 10039000 3255 6341 2209 2255 3701 3701 -0.07124635201557794 ATAIYSVL 8 Unmodified _ATAIYSVL_ 0 0 0 REV__nc|ENSG00000172053|P47897-2|QARS1 REV__nc|ENSG00000172053|P47897-2|QARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.482666015625 1 837.471646 836.46437 0.10347 8.6657E-05 0.20717 0.0001735 0.31065 0.00026016 837.4718567754271 68.97 0.33898 68.97 68.764 69.103 0 24 14 2 0 0 0 0.80722 1 38361 38361 2.3027 2.3027 1 1453300 + 3256 29783 2210 2256 3702 3702 0.03959595120193171 ATAKLDKV 8 Unmodified _ATAKLDKV_ 0 0 0 ENST00000478998.5_1_3:108124174-108178278:-|nuORF;ENSG00000144821|ENST00000693548|MYH15 ENST00000478998.5_1_3:108124174-108178278:-|nuORF ENST00000478998.5_1_3:108124174-108178278:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.259033203125 2 423.258185 844.501818 1.398 0.00059171 1.046 0.00044271 2.444 0.0010344 423.25855212279725 20.408 0.29093 17.715 17.571 17.862 -2.693 29 15 3 0 0 0 0.16757 2 10842 10842;10942 82.529 3.8013 1 4827200 3257 5647 2211 2257 3703;3704 3703 0.07334686385809164 ATALGTVALAL 11 Unmodified _ATALGTVALAL_ 0 0 0 ENSG00000148343|ENST00000684074|MIGA2;ENST00000474534.1_1_9:131798902-131809484:+|nuORF;nc|ENSG00000148343|Q7L4E1-2|MIGA2;nc|ENSG00000148343|Q7L4E1-3|MIGA2 ENSG00000148343|ENST00000684074|MIGA2 ENSG00000148343|ENST00000684074|MIGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8064270019531 2 500.8055 999.596446 0.93535 0.00046843 0.012885 6.4528E-06 0.94824 0.00047488 500.80549905335624 57.085 0.55403 51.108 50.773 51.327 -5.9769 66 32 3 0 0 0 0.036454 1 36355 36355 53.833 3.8998 1 104930000 3258 5921 2212 2258 3705 3705 0.09663200137117656 ATARQNFTY 9 Unmodified _ATARQNFTY_ 0 0 0 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2608032226562 2 536.26453 1070.51451 -0.06486 -3.4782E-05 -2.018 -0.0010822 -2.0828 -0.001117 536.2606176311908 38.332 0.30814 38.046 37.866 38.174 -0.28687 27 13 3 0 0 0 0.39863 1 20187 20187 12.532 3.9383 1 1970800 3259 1300 2213 2259 3706 3706 -0.017929022219504986 ATAVAEPGSL 10 Unmodified _ATAVAEPGSL_ 0 0 0 REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2410278320312 2 458.242732 914.470912 0.91648 0.00041997 -0.4275 -0.0001959 0.48898 0.00022407 458.24185302058 38.729 0.17489 38.729 38.66 38.834 0 12 7 2 0 0 0 0.33553 1 20731 20731 25.399 2.2509 1 1395300 + 3260 24741 2214 2260 3707 3707 0.010254882809135779 ATAVAEPGSL 10 Unmodified _ATAVAEPGSL_ 0 0 0 REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF REV__ENST00000216479.7_1_14:77924461-77924521:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 458.242732 914.470912 0.91648 0.00041997 -0.4275 -0.0001959 0.48898 0.00022407 458.24185302058 38.729 0.17489 38.729 38.66 38.834 0 0 0 NaN 25.399 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1395300 + 3261 24741 2214 2260 0.010254882809135779 ATAVAHCKR 9 Unmodified _ATAVAHCKR_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;chr19:39435705-39435848|178|269.53|0.0|24.68|-|0|RPS16,RPS16|1 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.5181274414062 1 956.509445 955.502169 0.80775 0.00077262 2.6889 0.002572 3.4966 0.0033446 956.5092117917235 74.927 0.88744 68.752 68.328 69.215 -6.1757 126 47 3 0 0 0 0.32871 1 48899 48899 15.847 1.2655 1 35522000 3262 2285 2215 2261 3708 3708 0.022637828340066335 ATAVLIGYGV 10 Unmodified _ATAVLIGYGV_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.278564453125 2 482.279118 962.543683 0.55298 0.00026669 -0.66856 -0.00032243 -0.11558 -5.5742E-05 482.2786853128783 57.546 0.38749 57.057 56.88 57.267 -0.48974 43 18 3 0 0 0 0.074936 1 31232 31232 52.268 3.9225 1 36812000 3263 4315 2216 2262 3709 3709 0.06091242074330694 ATAVLIGYGV 10 Unmodified _ATAVLIGYGV_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2792053222656 2 482.279118 962.543683 0.82568 0.00039821 0.48365 0.00023325 1.3093 0.00063146 482.2786423950778 57.201 0.22211 57.135 56.998 57.22 -0.066036 16 10 2 0 0 0 0.074936 1 31134 31134 52.268 12.311 1 2840800 3264 4315 2216 2262 3710 3710 0.06091242074330694 ATAVLIGYGV 10 Unmodified _ATAVLIGYGV_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2797546386719 2 482.279118 962.543683 1.2931 0.00062365 0.07438 3.5872E-05 1.3675 0.00065952 482.2790364556291 63.801 0.54373 57.625 57.391 57.935 -6.1757 83 29 4 0 0 0 0.074936 2 41165 41165;41438 52.268 10.429 1 111040000 3265 4315 2216 2262 3711;3712 3711 0.06091242074330694 ATAVLIGYGV 10 Unmodified _ATAVLIGYGV_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 482.279118 962.543683 0.53727 0.00025911 2.3515 0.0011341 2.8888 0.0013932 482.2804147661845 57.068 0.30046 57.068 56.877 57.177 0 -0.03313 0.00019416 NaN 52.268 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6691100 3266 4315 2216 2262 0.06091242074330694 ATAVTPIIFL 10 Unmodified _ATAVTPIIFL_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3179931640625 2 523.318243 1044.62193 1.3923 0.00072859 -0.26573 -0.00013906 1.1265 0.00058953 523.3180506814707 97.187 0.69193 91.011 90.693 91.384 -6.1757 104 39 3 0 0 0 0.13391 1 64374 64374 41.84 3.2249 1 43829000 + 3267 19283 2217 2263 3713 3713 0.10140674659578508 ATAYRGEIGY 10 Unmodified _ATAYRGEIGY_ 0 0 0 REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7742309570312 2 550.772188 1099.52982 0.40563 0.00022341 -0.69746 -0.00038414 -0.29183 -0.00016073 550.7719488624798 46.487 0.41156 41.407 41.1 41.512 -5.0805 106 40 4 0 0 0 0.23548 1 28565 28565 31.268 1.4278 1 139510000 + 3268 24454 2218 2264 3714 3714 -0.015960354247454234 ATCIAYSDLI 10 Unmodified _ATCIAYSDLI_ 0 0 0 nc|ENSG00000171757|Q8IZ02-3|LRRC34;ENSG00000171757|ENST00000446859|LRRC34 nc|ENSG00000171757|Q8IZ02-3|LRRC34 nc|ENSG00000171757|Q8IZ02-3|LRRC34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2669677734375 2 535.26535 1068.51615 NaN NaN NaN NaN NaN NaN NaN 67.026 1 67.026 66.526 67.526 0 0 0 0 0.92825 1 37381 37381 6.7232 1.9672 1 3269 8135 2219 2265 3715 3715 -0.015370292482202785 ATCWLDRRE 9 Unmodified _ATCWLDRRE_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-4|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-4|SLC2A4RG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2755737304688 2 575.277115 1148.53968 0.90648 0.00052148 -0.17771 -0.00010223 0.72877 0.00041924 575.2761823187824 81.364 0.30612 80.871 80.711 81.017 -0.49247 18 13 2 0 0 0 0.51218 1 44565 44565 6.7232 0 1 838650 + 3270 19499 2220 2266 3716 3716 -0.028651706910295616 ATDDPAARF 9 Unmodified _ATDDPAARF_ 0 0 0 ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9 ENST00000601764.5_1_19:4697564-4723732:-|nuORF ENST00000601764.5_1_19:4697564-4723732:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2299499511719 2 482.230156 962.445759 -0.62761 -0.00030265 0.63535 0.00030639 0.0077438 3.7343E-06 482.230311426448 30.341 0.32177 30.341 30.181 30.503 0 25 15 3 0 0 0 0.078314 1 15754 15754 38.176 22.328 1 2622800 3271 5387 2221 2267 3717 3717 -0.036965665216712296 ATDDPAARF 9 Unmodified _ATDDPAARF_ 0 0 0 ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9 ENST00000601764.5_1_19:4697564-4723732:-|nuORF ENST00000601764.5_1_19:4697564-4723732:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 482.230156 962.445759 1.1344 0.00054705 0.17686 8.5286E-05 1.3113 0.00063234 482.23024863498415 34.182 0.31383 30.197 30.065 30.379 -3.9853 -0.071992 -0.00019751 NaN 38.176 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6863700 3272 5387 2221 2267 -0.036965665216712296 ATDFLLSVT 9 Unmodified _ATDFLLSVT_ 0 0 0 REV__ENSG00000149218|ENST00000278505|ENDOD1 REV__ENSG00000149218|ENST00000278505|ENDOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.5185546875 1 966.514239 965.506963 0.079006 7.636E-05 0.61281 0.00059229 0.69182 0.00066865 966.5152752290245 69.03 0.16145 68.549 68.465 68.627 -0.48071 9 6 2 0 0 0 0.042911 1 37735 37735 48.346 14.243 1 656740 + 3273 20986 2222 2268 3718 3718 0.022829454577845354 ATDHHLPF 8 Unmodified _ATDHHLPF_ 0 0 0 ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 469.597900390625 2 469.229959 936.445365 0.31715 0.00014881 0.34441 0.00016161 0.66156 0.00031042 469.229954078014 45.188 0.63066 40.336 40.098 40.729 -4.852 108 42 3 0 0 0 8.7369 1 27984 27984 8.5933 8.5933 1 99345000 3274 11412 2223 2269 3719 3719 -0.02539941450868355 ATDITEFDWIR 11 Unmodified _ATDITEFDWIR_ 0 0 0 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3341674804688 2 683.835517 1365.65648 -1.0542 -0.00072087 -3.3187 -0.0022694 -4.3728 -0.0029903 683.8336503706765 32.234 0.27297 32.234 32.043 32.316 0 19 13 2 0 0 0 0.29817 1 16803 16803 8.1555 0.54658 1 1326600 + 3275 24256 2224 2270 3720 3720 -0.011721539903192024 ATDSEVWHKL 10 Unmodified _ATDSEVWHKL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.236083984375 3 395.868139 1184.58259 0.98724 0.00039082 0.53668 0.00021246 1.5239 0.00060327 396.2024841317198 40.614 0.24154 36.085 35.971 36.212 -4.5294 20 14 2 0 0 0 0.23767 1 24321 24321 3.5871 0.85186 1 3459200 3276 6400 2225 2271 3721 3721 -0.002320773619430838 ATEEFFFY 8 Unmodified _ATEEFFFY_ 0 0 0 REV__ENSG00000196189|ENST00000368285|SEMA4A REV__ENSG00000196189|ENST00000368285|SEMA4A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2622680664062 2 527.231833 1052.44911 0.60778 0.00032044 -2.2952 -0.0012101 -1.6875 -0.00088968 527.2309373314131 66.562 0.48343 66.562 66.175 66.658 0 35 21 3 0 0 0 8.7369 1 36986 36986 5.7604 1.0044 1 997630 + 3277 23803 2226 2272 3722 3722 -0.07501316467642027 ATEEPGESF 9 Unmodified _ATEEPGESF_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7056274414062 2 483.70618 965.397806 -1.0856 -0.0005251 0.0507 2.4524E-05 -1.0349 -0.00050057 483.70608885064104 32.466 0.47172 32.466 32.242 32.714 0 69 27 3 0 0 0 0.0083087 2 16975 16872;16975 104.8 52.668 1 29033000 3278 394 2227 2273 3723;3724 3724 -0.08627685232363547 ATEEPGESF 9 Unmodified _ATEEPGESF_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4043579101562 1 966.405083 965.397806 -1.2028 -0.0011624 -0.45024 -0.00043512 -1.6531 -0.0015975 966.404653561023 32.472 0.39782 32.472 32.261 32.658 0 42 23 2 0 0 0 0.0018186 2 16985 16879;16985 133.7 80.02 1 12432000 3279 394 2227 2273 3725;3726 3726 -0.08627685232363547 ATEEPGESF 9 Unmodified _ATEEPGESF_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4043579101562 1 966.405083 965.397806 0.84561 0.0008172 -0.77015 -0.00074427 0.075461 7.2926E-05 966.404084585265 38.034 0.45904 33.665 33.473 33.932 -4.3689 42 27 2 0 0 0 0.0018186 2 22408 22288;22408 133.7 76.231 1 11000000 3280 394 2227 2273 3727;3728 3728 -0.08627685232363547 ATEEPGESF 9 Unmodified _ATEEPGESF_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.70654296875 2 483.70618 965.397806 1.0536 0.00050965 -0.72395 -0.00035018 0.32969 0.00015947 483.70587918081316 38.081 0.5449 33.712 33.419 33.964 -4.3689 80 32 3 0 0 0 0.0048787 2 22302 22302;22433 117.6 57.209 1 42205000 3281 394 2227 2273 3729;3730 3729 -0.08627685232363547 ATEGQECWH 9 Unmodified _ATEGQECWH_ 0 0 0 ENST00000378347.2_1_16:89006602-89017765:+|nuORF ENST00000378347.2_1_16:89006602-89017765:+|nuORF ENST00000378347.2_1_16:89006602-89017765:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.711181640625 2 530.711273 1059.40799 NaN NaN NaN NaN NaN NaN NaN 22.512 1 22.512 22.012 23.012 0 0 0 0 0.84564 1 11451 11451 2.0598 0 1 3282 12545 2228 2274 3731 3731 -0.11933400778798386 ATEKEKVWYH 10 Unmodified _ATEKEKVWYH_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MSMS AL20221201_MKP_PDAC_01 4 430.8885192871094 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 109.19 1 103.01 102.51 103.51 -6.1757 0 0 0 0.99248 1 72934 72934 0.62683 0 1 3283 1284 2229 2275 3732 3732 0.007201845634881465 ATEKRPTI 8 Unmodified _ATEKRPTI_ 0 0 0 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2674560546875 2 458.266542 914.51853 0.55267 0.00025327 0.54478 0.00024966 1.0975 0.00050293 458.2667906562817 38.021 0.28296 38.021 37.846 38.129 0 27 13 3 0 0 0 0.57045 1 20280 20280 28.487 2.2187 1 1299800 3284 16259 2230 2276 3733 3733 0.05785187271760606 ATEPLIFF 8 Unmodified _ATEPLIFF_ 0 0 0 REV__ENST00000381774.8_1_16:12758610-12758712:-|nuORF REV__ENST00000381774.8_1_16:12758610-12758712:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2571105957031 2 469.255111 936.49567 NaN NaN NaN NaN NaN NaN NaN 91.712 1 91.231 90.731 91.731 -0.48092 0 0 0 0.95201 1 50132 50132 10.183 2.2732 1 + 3285 26336 2231 2277 3734 3734 0.024881681542979095 ATEQQSDMV 9 Unmodified _ATEQQSDMV_ 0 0 0 ENSG00000282419|ENST00000632372|TEX13D ENSG00000282419|ENST00000632372|TEX13D ENSG00000282419|ENST00000632372|TEX13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7178955078125 2 504.718764 1007.42298 0.27169 0.00013713 -0.84186 -0.0004249 -0.57017 -0.00028777 504.7182198003867 70.383 0.33778 70.383 70.227 70.565 0 24 13 2 0 0 0 0.23158 1 39213 39213 20.454 20.454 1 1880900 3286 10948 2232 2278 3735 3735 -0.08043953701439932 ATEYAAYHQI 10 Unmodified _ATEYAAYHQI_ 0 0 0 ENSG00000144182|ENST00000651691|LIPT1 ENSG00000144182|ENST00000651691|LIPT1 ENSG00000144182|ENST00000651691|LIPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7808837890625 2 583.77747 1165.54039 0.50936 0.00029735 1.5119 0.00088263 2.0213 0.00118 583.779082403792 53.853 1.0912 53.853 53.061 54.152 0 95 50 4 0 0 0 0.46514 1 29898 29898 18.146 1.0335 1 7336800 3287 5588 2233 2279 3736 3736 -0.03576052770335991 ATEYKVTYLT 10 Unmodified _ATEYKVTYLT_ 0 0 0 REV__nc|ENSG00000120451|Q92543-2|SNX19 REV__nc|ENSG00000120451|Q92543-2|SNX19 MSMS AL20221201_MKP_PDAC_01 4 396.8773498535156 3 396.876411 1187.6074 NaN NaN NaN NaN NaN NaN NaN 5.4147 1 2.9327 2.4327 3.4327 -2.482 0 0 0 0.9997 1 2748 2748 0.69767 0.53834 1 + 3288 19244 2234 2280 3737 3737 0.021105577207436 ATFLDPRY 8 Unmodified _ATFLDPRY_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2292175292969 2 491.753267 981.491981 -0.4067 -0.0002 0.72994 0.00035895 0.32324 0.00015895 491.7537441674757 41.321 0.26622 41.321 41.196 41.462 0 17 12 2 0 0 0 8.7369 1 22322 22322 13.508 0.97634 1 4964500 3289 10506 2235 2281 3738 3738 0.0004949838042875854 ATFQMWWY 8 Unmodified _ATFQMWWY_ 0 0 0 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7508544921875 2 566.74967 1131.48479 0.26138 0.00014814 1.5696 0.00088956 1.831 0.0010377 566.7504116913727 69.812 0.1087 69.812 69.754 69.863 0 6 4 2 0 0 0 0.80143 1 38912 38912 5.7604 1.0044 1 513030 + 3290 21994 2236 2282 3739 3739 -0.07569557491660817 ATFQMWWY 8 Unmodified _ATFQMWWY_ 0 0 0 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 566.74967 1131.48479 0.26138 0.00014814 1.5696 0.00088956 1.831 0.0010377 566.7504116913727 69.812 0.1087 69.812 69.754 69.863 0 0 0 NaN 5.7604 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 513030 + 3291 21994 2236 2282 -0.07569557491660817 ATFVQQRA 8 Unmodified _ATFVQQRA_ 0 0 0 REV__ENSG00000009335|ENST00000348165|UBE3C REV__ENSG00000009335|ENST00000348165|UBE3C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.5591735839844 2 460.751059 919.487565 -0.2656 -0.00012237 -0.12543 -5.7793E-05 -0.39103 -0.00018017 460.75092897703604 30.473 0.14424 30.473 30.422 30.566 0 9 6 2 0 0 0 8.7369 1 15876 15876 2.3027 0.24298 1 1578300 + 3292 17032 2237 2283 3740 3740 0.0246003395752723 ATGAEHCDC 9 Unmodified _ATGAEHCDC_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5 REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.6574401855469 2 453.657652 905.300751 0.46444 0.0002107 -2.3706 -0.0010754 -1.9061 -0.00086472 453.6567454109584 38.396 0.4894 38.413 38.214 38.703 0.01704 32 22 2 0 0 0 0.61381 1 20445 20445 0.52476 0.52476 1 2547800 + 3293 19736 2238 2284 3741 3741 -0.15568693984675974 ATGAVHLM 8 Unmodified _ATGAVHLM_ 0 0 0 ENSG00000166454|ENST00000299575|ATMIN;ATMIN|p.S500Nfs*12|1|0.07|ENSG00000166454|chr16:81043997-81044019|GTCCAACGGATGACCATGTACAG/-|frameshift_variant;nc|ENSG00000166454|O43313-2|ATMIN ENSG00000166454|ENST00000299575|ATMIN ENSG00000166454|ENST00000299575|ATMIN MSMS AL20221201_MKP_PDAC_01 4 400.2091674804688 2 400.210181 798.405809 NaN NaN NaN NaN NaN NaN NaN 47.196 1 42.116 41.616 42.616 -5.0805 0 0 0 0.9706 1 29265 29265 6.3541 3.4649 1 3294 7492 2239 2285 3742 3742 -0.0014578472591892933 ATGDRTPVIS 10 Unmodified _ATGDRTPVIS_ 0 0 0 REV__ENSG00000165912|ENST00000298838|PACSIN3 REV__ENSG00000165912|ENST00000298838|PACSIN3 MSMS AL20221201_MKP_PDAC_01 4 508.7664794921875 2 508.772188 1015.52982 NaN NaN NaN NaN NaN NaN NaN 48.293 1 43.059 42.559 43.559 -5.2339 0 0 0 0.42631 1 30068 30068 29.841 1.3537 1 + 3295 22062 2240 2286 3743 3743 0.022679645752418764 ATGHDTVDAVN 11 Unmodified _ATGHDTVDAVN_ 0 0 0 REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1735229492188 3 367.171999 1098.49417 NaN NaN NaN NaN NaN NaN NaN 68.681 1 68.681 68.181 69.181 0 0 0 0 0.93933 1 38279 38279 1.2148 0.25256 1 + 3296 17060 2241 2287 3744 3744 -0.0511411767242862 ATGHGGCAWLE 11 Unmodified _ATGHGGCAWLE_ 0 0 0 REV__ENST00000468031.1_1_16:449329-450339:+|nuORF REV__ENST00000468031.1_1_16:449329-450339:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8306884765625 3 367.830919 1100.47093 0.26277 9.6656E-05 0.19835 7.2958E-05 0.46112 0.00016961 367.8307373824556 66.561 0.71683 66.561 66.195 66.912 0 50 32 2 0 0 0 0.71618 1 37138 37138 1.1098 0 1 1466500 + 3297 27444 2242 2288 3745 3745 -0.07528834990739597 ATGLIQYAL 9 Unmodified _ATGLIQYAL_ 0 0 0 ENST00000590121.1_1_19:12917502-12918326:+|nuORF;ENSG00000104889|ENST00000221486|RNASEH2A ENST00000590121.1_1_19:12917502-12918326:+|nuORF ENST00000590121.1_1_19:12917502-12918326:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.2703552246094 2 475.271293 948.528032 NaN NaN NaN NaN NaN NaN NaN 84.562 1 78.386 77.886 78.886 -6.1757 0 0 0 0.46757 1 55640 55640 16.942 2.3606 1 3298 2254 2243 2289 3746 3746 0.05170955557275647 ATGPKTQNFS 10 Unmodified _ATGPKTQNFS_ 0 0 0 nc|ENSG00000138039|P22888-2|LHCGR nc|ENSG00000138039|P22888-2|LHCGR nc|ENSG00000138039|P22888-2|LHCGR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.76416015625 2 525.764363 1049.51417 -0.11439 -6.0145E-05 -2.5853 -0.0013592 -2.6997 -0.0014194 525.7637675029252 33.286 0.19585 33.286 33.15 33.345 0 18 9 3 0 0 0 0.63399 1 17455 17455 9.3831 0 1 1494300 3299 16223 2244 2290 3747 3747 -0.008603219418091612 ATGRFLHA 8 Unmodified _ATGRFLHA_ 0 0 0 REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7421569824219 2 436.740494 871.466435 0.83078 0.00036283 1.4234 0.00062165 2.2542 0.00098448 436.74123746107784 68.824 0.58801 68.849 68.479 69.067 0.025146 55 27 4 0 0 0 0.79783 1 37649 37649 7.9102 2.6795 1 19595000 + 3300 28780 2245 2291 3748 3748 0.025560686486414852 ATGRFLHA 8 Unmodified _ATGRFLHA_ 0 0 0 REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF REV__ENST00000556493.1_1_14:102290168-102290477:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.740494 871.466435 0.33142 0.00014475 1.6526 0.00072176 1.984 0.0008665 436.7411011873216 69.107 0.53235 69.107 68.717 69.249 0 0.15057 -2.1155E-05 NaN 7.9102 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 908500 + 3301 28780 2245 2291 0.025560686486414852 ATGTVIVSV 9 Unmodified _ATGTVIVSV_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.219970703125 2 423.750193 845.485833 1.3467 0.00057066 -0.80958 -0.00034306 0.53711 0.0002276 423.7500468029456 50.378 0.21595 44.839 44.741 44.957 -5.5391 19 13 2 0 0 0 0.16785 1 31634 31634 11.64 0 1 7953300 3302 1378 2246 2292 3749 3749 0.056909801489041456 ATHCRTPMFTF 11 Unmodified _ATHCRTPMFTF_ 0 0 0 REV__ENST00000462326.5_1_7:55503792-55560013:-|nuORF REV__ENST00000462326.5_1_7:55503792-55560013:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.8045654296875 2 656.302275 1310.59 0.24778 0.00016262 -1.4788 -0.00097056 -1.231 -0.00080794 656.3013051204416 60.816 0.5035 60.816 60.646 61.149 0 56 20 5 0 0 0 0.63851 1 33863 33863 9.3831 2.0939 1 6690400 + 3303 27336 2247 2293 3750 3750 -0.052873843575525825 ATHKLLDNEK 10 Unmodified _ATHKLLDNEK_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8805847167969 3 390.215539 1167.62479 NaN NaN NaN NaN NaN NaN NaN 14.854 1 14.823 14.323 15.323 -0.030868 0 0 0 0.99897 1 7255 7255 0.77653 0.21336 1 3304 3276 2248 2294 3751 3751 0.04767898046429764 ATHPRAMLL 9 Unmodified _ATHPRAMLL_ 0 0 0 ENST00000264963.8_2_2:97372767-97372965:-|nuORF ENST00000264963.8_2_2:97372767-97372965:-|nuORF ENST00000264963.8_2_2:97372767-97372965:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.2854309082031 2 505.284211 1008.55387 NaN NaN NaN NaN NaN NaN NaN 52.029 1 46.295 45.795 46.795 -5.7345 0 0 0 0.39043 1 32810 32810 20.454 0 1 3305 11323 2249 2295 3752 3752 0.04993526527925951 ATHVLKPG 8 Unmodified _ATHVLKPG_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7448425292969 2 411.745245 821.475937 -0.23489 -9.6713E-05 0.18658 7.6825E-05 -0.048303 -1.9888E-05 411.74523915096347 31.044 0.17924 31.044 30.953 31.132 0 18 8 3 0 0 0 0.19688 1 16155 16155 71.134 3.7897 1 2953100 3306 981 2250 2296 3753 3753 0.0580583693420067 ATHVLKPG 8 Unmodified _ATHVLKPG_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7460327148438 2 411.745245 821.475937 0.35906 0.00014784 -0.25731 -0.00010595 0.10174 4.1891E-05 411.74526303496265 31.055 0.19439 30.952 30.839 31.034 -0.10269 12 7 2 0 0 0 0.40602 1 16123 16123 43.858 3.4097 1 2578800 3307 981 2250 2296 3754 3754 0.0580583693420067 ATHVLKPG 8 Unmodified _ATHVLKPG_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7454528808594 2 411.745245 821.475937 1.0529 0.00043353 0.076837 3.1637E-05 1.1297 0.00046517 411.7451669322736 34.714 0.40331 30.619 30.384 30.788 -4.0951 41 23 2 0 0 0 0.25522 1 20044 20044 61.357 13.012 1 19148000 3308 981 2250 2296 3755 3755 0.0580583693420067 ATIEDYKMK 9 Unmodified _ATIEDYKMK_ 0 0 0 REV__ENST00000558953.1_1_14:103932392-103935580:+|nuORF REV__ENST00000558953.1_1_14:103932392-103935580:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.8571472167969 3 366.854842 1097.5427 NaN NaN NaN NaN NaN NaN NaN 14.948 1 12.421 11.921 12.921 -2.5273 0 0 0 0.6557 1 7629 7629 7.1017 1.699 1 + 3309 17571 2251 2297 3756 3756 -0.002173403568804133 ATIETSEQTAE 11 Unmodified _ATIETSEQTAE_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000558451.1_1_15:60747196-60747605:-|nuORF ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2733764648438 2 590.272415 1178.53028 -0.48725 -0.00028761 -0.40377 -0.00023834 -0.89103 -0.00052595 590.2721256503083 26.148 0.29705 26.148 26.006 26.303 0 35 16 3 0 0 0 0.28407 1 13391 13391 27.629 8.3718 1 4204300 3310 4099 2252 2298 3757 3757 -0.051847052862285636 ATIETSEQTAE 11 Unmodified _ATIETSEQTAE_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000558451.1_1_15:60747196-60747605:-|nuORF ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 590.272415 1178.53028 0.56974 0.0003363 2.0318 0.0011993 2.6016 0.0015356 590.2736063620363 29.173 0.075064 25.871 25.831 25.906 -3.3016 -0.13818 0.0026725 NaN 27.629 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 16994000 3311 4099 2252 2298 -0.051847052862285636 ATINEVVQV 9 Unmodified _ATINEVVQV_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7725830078125 2 486.771657 971.528761 0.80446 0.00039159 0.54716 0.00026634 1.3516 0.00065793 486.7715988112654 54.167 0.27748 54.167 54.032 54.309 0 20 12 2 0 0 0 0.070838 2 30040 30040;30094 39.957 13.074 1 2375100 3312 8162 2253 2299 3758;3759 3758 0.041857502063294305 ATISFYEDSDS 11 Unmodified _ATISFYEDSDS_ 0 0 0 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2;ENSG00000203877|ENST00000369689|RIPPLY2 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.7576904296875 2 617.75914 1233.50373 NaN NaN NaN NaN NaN NaN NaN 48.773 1 48.773 48.273 49.273 0 0 0 0 0.86932 1 26784 26784 8.7454 1.4562 1 3313 10230 2254 2300 3760 3760 -0.10368394177567097 ATIVRGLTL 9 Unmodified _ATIVRGLTL_ 0 0 0 REV__ENSG00000138160|ENST00000260731|KIF11 REV__ENSG00000138160|ENST00000260731|KIF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.3008117675781 2 472.300384 942.586216 0.661 0.00031219 0.39412 0.00018614 1.0551 0.00049833 472.3005655586723 52.626 0.30074 52.567 52.407 52.708 -0.058918 23 14 2 0 0 0 0.094149 1 28492 28492 34.402 5.3201 1 3013600 + 3314 20309 2255 2301 3761 3761 0.112626372025602 ATKAAESSL 9 Unmodified _ATKAAESSL_ 0 0 0 REV__EEA1|p.A654S|1|0.1|ENSG00000102189|chr12:92813063-92813063|C/A|missense_variant REV__EEA1|p.A654S|1|0.1|ENSG00000102189|chr12:92813063-92813063|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 439.2323913574219 2 439.234907 876.455261 NaN NaN NaN NaN NaN NaN NaN 59.935 1 53.821 53.321 54.321 -6.1147 0 0 0 0.33856 1 38534 38534 23.148 5.0134 1 + 3315 16916 2256 2302 3762 3762 0.012092017638565267 ATKFGETFAFE 11 Unmodified _ATKFGETFAFE_ 0 0 0 ENSG00000187792|ENST00000341976|ZNF70 ENSG00000187792|ENST00000341976|ZNF70 ENSG00000187792|ENST00000341976|ZNF70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.3017578125 2 624.300778 1246.587 0.90992 0.00056807 -0.058797 -3.6707E-05 0.85113 0.00053136 624.3006894949903 52.691 0.24211 52.629 52.463 52.705 -0.061745 20 11 2 0 0 0 0.66968 1 28541 28541 7.1017 0.37856 1 2550600 3316 9596 2257 2303 3763 3763 -0.02642612939052924 ATKHIALI 8 Unmodified _ATKHIALI_ 0 0 0 REV__nc|ENSG00000127831|P09327-2|VIL1 REV__nc|ENSG00000127831|P09327-2|VIL1 MSMS AL20221201_MKP_PDAC_01 4 433.7769165039062 2 433.776545 865.538538 NaN NaN NaN NaN NaN NaN NaN 53.125 1 47.321 46.821 47.821 -5.8042 0 0 0 0.54148 1 33549 33549 37.974 3.8716 1 + 3317 19591 2258 2304 3764 3764 0.10038983002368695 ATKMAALHY 9 Unmodified _ATKMAALHY_ 0 0 0 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2596130371094 2 503.262945 1004.51134 -0.13833 -6.9618E-05 -1.4332 -0.00072127 -1.5715 -0.00079089 503.2598562652982 26.493 0.33495 26.493 26.323 26.658 0 40 15 3 0 0 0 0.49272 1 13637 13637 7.9102 3.1541 1 6437300 3318 2837 2259 2305 3765 3765 0.009261313996717035 ATKPDAFF 8 Unmodified _ATKPDAFF_ 0 0 0 ENST00000341170.4_1_9:100389809-100395565:-|nuORF ENST00000341170.4_1_9:100389809-100395565:-|nuORF ENST00000341170.4_1_9:100389809-100395565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 898.4564819335938 1 896.451245 895.443968 -0.04777 -4.2824E-05 0.10717 9.6072E-05 0.059399 5.3248E-05 896.4511807819804 62.555 0.4955 62.068 61.809 62.305 -0.48764 59 23 3 0 0 0 0.80232 1 34048 34048 5.2307 0 1 16549000 3319 11964 2260 2306 3766 3766 -0.007935755396260902 ATKRKKRK 8 Unmodified _ATKRKKRK_ 0 0 0 ENSG00000162771|ENST00000294829|GARIN4 ENSG00000162771|ENST00000294829|GARIN4 ENSG00000162771|ENST00000294829|GARIN4 MSMS AL20221201_MKP_PDAC_01 4 508.3481750488281 2 508.345992 1014.67743 NaN NaN NaN NaN NaN NaN NaN 105.94 1 99.762 99.262 100.26 -6.1757 0 0 0 0.97444 1 70944 70944 0.69038 0 1 3320 6910 2261 2307 3767 3767 0.17067945690564557 ATLAELVQYY 10 Unmodified _ATLAELVQYY_ 0 0 0 nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8062744140625 2 585.805697 1169.59684 0.17088 0.0001001 -0.16572 -9.7081E-05 0.0051577 3.0214E-06 585.8055111481997 54.962 0.38005 54.962 54.79 55.17 0 45 16 4 0 0 0 0.33553 1 30589 30589 25.399 13.159 1 22904000 3321 8825 2262 2308 3768 3768 0.01882575066338177 ATLAELVQYY 10 Unmodified _ATLAELVQYY_ 0 0 0 nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.805697 1169.59684 0.36124 0.00021162 0.0053964 3.1613E-06 0.36664 0.00021478 585.8057372204669 55.561 0.28683 55.083 54.926 55.213 -0.47798 0.060597 0.00011756 NaN 25.399 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4765500 3322 8825 2262 2308 0.01882575066338177 ATLALLAGAY 10 Unmodified _ATLALLAGAY_ 0 0 0 nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;ENST00000545213.5_1_14:24798022-24799232:-|nuORF;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2803344726562 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 57.205 1 57.205 56.705 57.705 0 0 0 0 0.5926 1 31830 31830 21.747 3.6003 1 3323 15213;16182 2263 2309 3769 3769 0.06091242074319325 ATLDKQISL 9 Unmodified _ATLDKQISL_ 0 0 0 REV__ENSG00000156011|ENST00000327040|PSD3 REV__ENSG00000156011|ENST00000327040|PSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.78759765625 2 494.787307 987.560061 0.14984 7.4139E-05 -0.43621 -0.00021583 -0.28637 -0.00014169 494.7872215965266 52.577 0.16824 52.577 52.489 52.657 0 10 7 2 0 0 0 0.2143 1 29117 29117 21.747 2.4897 1 1590000 + 3324 21305 2264 2310 3770 3770 0.06578323240444206 ATLDQFYDK 9 Unmodified _ATLDQFYDK_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7667846679688 2 550.766571 1099.51859 0.075854 4.1778E-05 0.87554 0.00048222 0.95139 0.00052399 550.7672413596312 40.495 0.1331 40.495 40.451 40.584 0 11 6 2 0 0 0 0.28023 1 21779 21779 18.146 3.3081 1 2282100 3325 1960 2265 2311 3771 3771 -0.027188575189029507 ATLENAPP 8 Unmodified _ATLENAPP_ 0 0 0 nc|ENSG00000181781|Q3SX64-2|CIMAP1D nc|ENSG00000181781|Q3SX64-2|CIMAP1D nc|ENSG00000181781|Q3SX64-2|CIMAP1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7117919921875 2 406.711068 811.407583 0.047595 1.9358E-05 0.31426 0.00012781 0.36186 0.00014717 406.71116254001254 61.445 0.36583 61.445 61.275 61.641 0 31 16 3 0 0 0 0.64853 1 34231 34231 21.747 0 1 3161000 3326 16433 2266 2312 3772 3772 -0.005664524363282908 ATLFAAPLSI 10 Unmodified _ATLFAAPLSI_ 0 0 0 REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2953796386719 2 502.294768 1002.57498 1.2969 0.00065141 -0.986 -0.00049526 0.31087 0.00015615 502.2950051398804 95.407 0.60316 89.231 88.748 89.351 -6.1757 43 33 2 0 0 0 0.04925 1 63159 63159 58.679 0.95683 1 15450000 + 3327 27315 2267 2313 3773 3773 0.07379815108413368 ATLFYLYL 8 Unmodified _ATLFYLYL_ 0 0 0 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2587280273438 2 502.278586 1002.54262 0.27677 0.00013902 1.591 0.00079914 1.8678 0.00093816 502.27964587714575 70.233 0.211 70.233 70.122 70.333 0 11 9 2 0 0 0 8.7369 1 39170 39170 8.5933 1.304 1 372210 + 3328 29682 2268 2314 3774 3774 0.04145027705408211 ATLIDEPT 8 Unmodified _ATLIDEPT_ 0 0 0 nc|ENSG00000157765|O95436-2|SLC34A2;ENSG00000157765|ENST00000382051|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 nc|ENSG00000157765|O95436-2|SLC34A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2244873046875 2 430.224008 858.433463 0.084952 3.6548E-05 4.1 0.0017639 4.185 0.0018005 430.2261519624456 46.941 0.52771 46.941 46.762 47.29 0 33 25 2 0 0 0 0.61462 1 25669 25669 24.674 6.5389 1 4190200 3329 6538 2269 2315 3775 3775 -0.0014160298470642374 ATLIVNVKPQI 11 Unmodified _ATLIVNVKPQI_ 0 0 0 ENSG00000102755|ENST00000282397|FLT1;nc|ENSG00000102755|P17948-4|FLT1;nc|ENSG00000102755|P17948-2|FLT1;nc|ENSG00000102755|P17948-3|FLT1 ENSG00000102755|ENST00000282397|FLT1 ENSG00000102755|ENST00000282397|FLT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2505493164062 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 69.978 1 69.499 68.999 69.999 -0.47903 0 0 0 0.94165 1 38261 38261 1.3296 0.55311 1 3330 2061 2270 2316 3776 3776 0.14403109016711824 ATLNNLQGSY 10 Unmodified _ATLNNLQGSY_ 0 0 0 REV__ENSG00000170160|ENST00000399273|CCDC144A REV__ENSG00000170160|ENST00000399273|CCDC144A MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.77197265625 2 540.769645 1079.52474 0.57641 0.0003117 0.098837 5.3448E-05 0.67525 0.00036515 540.7714188452281 66.07 1.4615 59.894 59.382 60.843 -6.1757 329 84 5 0 0 0 0.38092 1 42931 42931 22.736 2.3217 1 517890000 + 3331 22450 2271 2317 3777 3777 -0.011843392873743142 ATLTSNYGRV 10 Unmodified _ATLTSNYGRV_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1923522949219 3 361.192734 1080.55637 -0.5777 -0.00020866 0.737 0.0002662 0.1593 5.7538E-05 361.1930315751396 15.491 0.36051 15.477 15.35 15.711 -0.014067 167 127 2 0 0 0 0.6966 1 7648 7648 1.5923 0.37745 1 895720 + 3332 17659 2272 2318 3778 3778 0.019316534665676954 ATLVLVPP 8 Unmodified _ATLVLVPP_ 0 0 0 REV__ENSG00000180929|ENST00000322241|GPR62 REV__ENSG00000180929|ENST00000322241|GPR62 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.265625 2 405.260197 808.50584 -0.13058 -5.292E-05 -2.0642 -0.00083654 -2.1948 -0.00088946 405.2594056061324 34.589 0.12791 34.616 34.54 34.668 0.027401 7 5 2 0 0 0 8.7369 1 18199 18199 2.5775 0 1 914750 + 3333 23177 2273 2319 3779 3779 0.09392775879507553 ATLYFRDL 8 Unmodified _ATLYFRDL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.767578125 2 499.768917 997.523281 0.29569 0.00014777 -0.65548 -0.00032759 -0.35979 -0.00017981 499.76862819081407 67.448 0.38337 66.966 66.758 67.142 -0.48218 35 16 3 0 0 0 0.78849 1 36897 36897 9.3474 0 1 2096500 3334 1707 2274 2320 3780 3780 0.024420714145321654 ATLYFRDL 8 Unmodified _ATLYFRDL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.768917 997.523281 0.69073 0.0003452 0.43309 0.00021645 1.1238 0.00056165 499.76895808779653 66.967 0.20695 66.985 66.857 67.064 0.018036 0.0096841 0.00054196 NaN 9.3474 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 967150 3335 1707 2274 2320 0.024420714145321654 ATMPVVPSV 9 Oxidation (M) _ATM(Oxidation (M))PVVPSV_ ATM(1)PVVPSV ATM(48)PVVPSV 0 0 1 ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENST00000479237.5_1_9:131770965-131773053:-|nuORF ENST00000479237.5_1_9:131770965-131773053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7442626953125 2 458.744053 915.473554 0.53229 0.00024418 -0.55771 -0.00025585 -0.025424 -1.1663E-05 458.74407302927375 47.105 0.27007 47.105 46.98 47.25 0 18 12 2 0 0 0 0.042911 1 25784 25784 48.346 12.302 1 1954700 3336 5920 2275 2321 3781 3781 1061 0.012436204142318275 ATNKFLNPQ 9 Unmodified _ATNKFLNPQ_ 0 0 0 nc|ENSG00000138756|Q9NSY1-2|BMP2K;nc|ENSG00000138756|Q9NSY1-3|BMP2K;ENSG00000138756|ENST00000502613|BMP2K nc|ENSG00000138756|Q9NSY1-2|BMP2K nc|ENSG00000138756|Q9NSY1-2|BMP2K MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.23583984375 2 516.777274 1031.53999 0.48968 0.00025306 1.603 0.0008284 2.0927 0.0010815 517.2806839632656 66.978 0.57564 66.978 66.839 67.414 0 44 25 3 0 0 0 0.19891 1 37402 37402 11.64 1.5664 1 790540 3337 5097 2276 2322 3782 3782 0.02548572300474916 ATNKTERDSF 10 Unmodified _ATNKTERDSF_ 0 0 0 REV__nc|ENSG00000136504|O95251-4|KAT7 REV__nc|ENSG00000136504|O95251-4|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.784423828125 2 584.783284 1167.55202 0.17186 0.0001005 0.80482 0.00047065 0.97668 0.00057115 584.7835937823854 31.228 0.59058 31.125 30.984 31.575 -0.10269 50 23 4 0 0 0 0.1942 1 16187 16187 34.402 8.1336 1 16885000 + 3338 20166 2277 2323 3783 3783 -0.025058557469947118 ATNRIISHF 9 Unmodified _ATNRIISHF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5296936035156 3 353.529569 1057.56688 -0.077359 -2.7349E-05 1.5121 0.00053456 1.4347 0.00050721 353.53002078443285 32.13 0.22896 32.001 31.891 32.12 -0.12915 13 8 2 0 0 0 0.25681 1 16734 16734 13.615 6.5131 1 1313900 3339 2874 2278 2324 3784 3784 0.04039680911660071 ATNRIISHF 9 Unmodified _ATNRIISHF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5295715332031 3 353.529569 1057.56688 -0.31854 -0.00011261 0.45203 0.0001598 0.13348 4.719E-05 353.52953499231694 31.991 0.20485 32.021 31.925 32.13 0.030106 15 8 2 0 0 0 0.15471 1 16796 16796 20.581 12.425 1 2403600 3340 2874 2278 2324 3785 3785 0.04039680911660071 ATNSCARCVPY 11 Unmodified _ATNSCARCVPY_ 0 0 0 nc|ENSG00000120949|P28908-3|TNFRSF8;ENSG00000120949|ENST00000263932|TNFRSF8 nc|ENSG00000120949|P28908-3|TNFRSF8 nc|ENSG00000120949|P28908-3|TNFRSF8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1458129882812 3 395.511081 1183.51141 0.48364 0.00019128 -0.58786 -0.0002325 -0.10422 -4.1219E-05 395.8449624282824 47.861 0.20817 47.861 47.707 47.916 0 11 9 2 0 0 0 0.30542 1 26174 26174 2.8433 0.75728 1 810240 3341 3557 2279 2325 3786 3786 -0.07300236662626958 ATNVTFGVYV 10 Unmodified _ATNVTFGVYV_ 0 0 0 REV__nc|ENSG00000181625|Q9BQ83-2|SLX1A REV__nc|ENSG00000181625|Q9BQ83-2|SLX1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.242919921875 2 535.779482 1069.54441 0.10822 5.7983E-05 -0.086008 -4.6081E-05 0.022213 1.1901E-05 535.7793662948246 43.199 0.30775 42.889 42.699 43.007 -0.31039 42 14 4 0 0 0 0.63399 1 22924 22924 9.3831 1.473 1 69316000 + 3342 19834 2280 2326 3787 3787 0.0124203672337444 ATNYSHIY 8 Unmodified _ATNYSHIY_ 0 0 0 REV__ENSG00000183735|ENST00000331710|TBK1 REV__ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7279052734375 2 484.727249 967.439946 0.53735 0.00026047 -0.6763 -0.00032782 -0.13895 -6.7352E-05 484.72697952590136 57.692 0.33734 57.692 57.532 57.869 0 26 16 2 0 0 0 0.80143 1 32178 32178 5.7604 0 1 7367800 + 3343 23372 2281 2327 3788 3788 -0.04507665033349895 ATPALYLLS 9 Unmodified _ATPALYLLS_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 948.5367431640625 1 948.54006 947.532783 0.46273 0.00043892 -1.5837 -0.0015022 -1.1209 -0.0010633 948.5384354222518 67.583 0.24737 67.101 67.007 67.255 -0.48218 16 10 2 0 0 0 0.095405 1 36918 36918 34.102 0 1 1139500 3344 363 2282 2328 3789 3789 0.056918397000458754 ATPDIKSHYAF 11 Unmodified _ATPDIKSHYAF_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.814697265625 2 625.31422 1248.61389 0.49168 0.00030745 -1.502 -0.00093924 -1.0104 -0.00063179 625.3132626705714 49.072 0.30701 49.028 48.908 49.215 -0.04369 22 14 2 0 0 0 0.59689 1 26516 26516 11.495 0.67078 1 1403100 3345 9323 2283 2329 3790 3790 -0.0004750432788114267 ATPEAIYGT 9 Unmodified _ATPEAIYGT_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.729736328125 2 461.729458 921.444362 -0.26605 -0.00012284 1.0878 0.00050229 0.82179 0.00037944 461.73006032333245 32.033 0.32319 32.033 31.88 32.204 0 27 15 2 0 0 0 0.14602 1 16713 16713 28.487 2.1456 1 1916800 3346 444 2284 2330 3791 3791 -0.019502006104403335 ATPHFTSVS 9 Unmodified _ATPHFTSVS_ 0 0 0 REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.734375 2 473.735074 945.455596 0.042926 2.0335E-05 -1.7132 -0.00081161 -1.6703 -0.00079128 473.7338877511254 28.818 0.18929 28.848 28.754 28.943 0.030104 14 7 2 0 0 0 0.070838 1 15023 15023 39.957 7.1716 1 4911400 + 3347 28046 2285 2331 3792 3792 -0.019313785162808017 ATPHFTSVS 9 Unmodified _ATPHFTSVS_ 0 0 0 REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF REV__ENST00000503883.1_1_4:81256940-81504361:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 473.7351379394531 2 473.735074 945.455596 NaN NaN NaN NaN NaN NaN NaN 33.192 1 29.336 28.836 29.836 -3.8562 0 0 0 0.18753 1 19019 19019 32.305 1.6689 1 + 3348 28046 2285 2331 3793 3793 -0.019313785162808017 ATPPRATQL 9 Unmodified _ATPPRATQL_ 0 0 0 REV__nc|ENSG00000169085|Q8TAG6-2|VXN REV__nc|ENSG00000169085|Q8TAG6-2|VXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7716979980469 2 477.771991 953.529429 -0.29787 -0.00014231 -0.06289 -3.0047E-05 -0.36076 -0.00017236 477.77197167474503 25.9 0.26878 25.9 25.717 25.986 0 20 12 2 0 0 0 0.10247 1 13293 13293 32.786 2.1491 1 2317900 + 3349 22373 2286 2332 3794 3794 0.05080589646047429 ATPQCRLSF 9 Unmodified _ATPQCRLSF_ 0 0 0 REV__ENST00000374695.7_1_1:22181227-22181402:-|nuORF REV__ENST00000374695.7_1_1:22181227-22181402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7576293945312 2 511.758027 1021.5015 0.29313 0.00015001 -1.0289 -0.00052654 -0.73575 -0.00037653 511.7573151786759 64.822 0.38573 64.337 64.209 64.594 -0.48512 41 17 3 0 0 0 0.5029 1 35452 35452 7.2892 0.56607 1 3110500 + 3350 26188 2287 2333 3795 3795 -0.00839056605695987 ATPQDMEKEL 10 Unmodified _ATPQDMEKEL_ 0 0 0 ENST00000524495.5_1_11:7669669-7672116:+|nuORF;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2 ENST00000524495.5_1_11:7669669-7672116:+|nuORF ENST00000524495.5_1_11:7669669-7672116:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2788696289062 2 581.276446 1160.53834 NaN NaN NaN NaN NaN NaN NaN 74.392 1 74.392 73.892 74.892 0 0 0 0 0.99091 1 41396 41396 1.6526 0.17072 1 3351 7480 2288 2334 3796 3796 -0.035508495704334564 ATPRTTPKAK 10 Unmodified _ATPRTTPKAK_ 0 0 0 REV__ENSG00000137441|ENST00000259989|FGFBP2 REV__ENSG00000137441|ENST00000259989|FGFBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2941284179688 2 535.819473 1069.62439 0.25031 0.00013412 -0.38311 -0.00020528 -0.1328 -7.1158E-05 535.8195680557455 37.893 0.26489 37.893 37.764 38.028 0 29 12 3 0 0 0 0.23558 1 20242 20242 8.1555 1.4324 1 5466900 + 3352 20238 2289 2335 3797 3797 0.09236523117215256 ATQGQLFLF 9 Unmodified _ATQGQLFLF_ 0 0 0 REV__ENST00000427538.5_1_X:65241684-65241948:-|nuORF REV__ENST00000427538.5_1_X:65241684-65241948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7750854492188 2 512.776742 1023.53893 NaN NaN NaN NaN NaN NaN NaN 32.169 1 32.198 31.698 32.698 0.029743 0 0 0 0.7453 1 16881 16881 7.9102 0.62092 1 + 3353 26924 2290 2336 3798 3798 0.028103579315597926 ATQVDMRAA 9 Unmodified _ATQVDMRAA_ 0 0 0 ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 MSMS AL20221201_MKP_PDAC_01 4 481.7394409179688 2 481.739834 961.465115 NaN NaN NaN NaN NaN NaN NaN 61.21 1 55.062 54.562 55.562 -6.1478 0 0 0 0.39043 1 39413 39413 20.454 2.3186 1 3354 6191 2291 2337 3799 3799 -0.017159335024075517 ATRHFQPF 8 Unmodified _ATRHFQPF_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2594909667969 2 502.259051 1002.50355 0.72156 0.00036241 -0.9771 -0.00049076 -0.25554 -0.00012835 502.2585094546393 74.164 0.41975 74.164 73.945 74.365 0 45 19 3 0 0 0 0.79669 1 41220 41220 8.5933 1.8701 1 1686700 3355 6860 2292 2338 3800 3800 0.0023974019442221106 ATRTVYCMN 9 Unmodified _ATRTVYCMN_ 0 0 0 nc|ENSG00000122783|Q9BWK5-2|CYREN;ENSG00000122783|ENST00000393114|CYREN nc|ENSG00000122783|Q9BWK5-2|CYREN nc|ENSG00000122783|Q9BWK5-2|CYREN MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7427368164062 2 529.741519 1057.46849 0.55273 0.00029281 0.2329 0.00012338 0.78564 0.00041618 529.7416594784374 26.761 0.34168 23.725 23.512 23.854 -3.0365 24 17 2 0 0 0 0.45045 1 14811 14811 10.074 2.7847 1 5218700 3356 3662 2293 2339 3801 3801 -0.05795006720040874 ATSFIKQIL 9 Unmodified _ATSFIKQIL_ 0 0 0 ENST00000558482.5_1_15:64221904-64332460:-|nuORF;ENST00000559007.5_1_15:64204043-64263759:-|nuORF;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2 ENST00000558482.5_1_15:64221904-64332460:-|nuORF ENST00000558482.5_1_15:64221904-64332460:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.807861328125 2 510.808042 1019.60153 0.1443 7.3711E-05 0.19256 9.836E-05 0.33686 0.00017207 510.8080934179656 68.713 0.36585 68.232 68.01 68.376 -0.48071 43 16 4 0 0 0 0.022193 1 37494 37494 61.357 3.8861 1 12143000 3357 615 2294 2340 3802 3802 0.09251503999769284 ATSFIKQIL 9 Unmodified _ATSFIKQIL_ 0 0 0 ENST00000558482.5_1_15:64221904-64332460:-|nuORF;ENST00000559007.5_1_15:64204043-64263759:-|nuORF;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2 ENST00000558482.5_1_15:64221904-64332460:-|nuORF ENST00000558482.5_1_15:64221904-64332460:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8085632324219 2 510.808042 1019.60153 0.95783 0.00048927 0.14332 7.3211E-05 1.1012 0.00056248 510.8078074675186 89.746 1.1215 83.57 82.779 83.9 -6.1757 157 62 3 0 0 0 0.011968 3 58787 58787;59170;59288 74.929 7.5851 1 45185000 3358 615 2294 2340 3803;3804;3805 3803 0.09251503999769284 ATSPFLLSV 9 Unmodified _ATSPFLLSV_ 0 0 0 REV__ENST00000254043.7_1_17:39676056-39676155:-|nuORF REV__ENST00000254043.7_1_17:39676056-39676155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7662048339844 2 467.765843 933.517133 0.97778 0.00045737 -0.22352 -0.00010456 0.75426 0.00035282 467.76585294465724 74.624 0.57993 68.449 68.252 68.832 -6.1757 51 30 2 0 0 0 0.2143 1 48766 48766 21.747 4.8044 1 21530000 + 3359 24900 2295 2341 3806 3806 0.04771553183013566 ATSTRECPS 9 Unmodified _ATSTRECPS_ 0 0 0 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 MSMS AL20221201_MKP_PDAC_01 4 476.21240234375 2 476.213649 950.412745 NaN NaN NaN NaN NaN NaN NaN 22.169 1 19.434 18.934 19.934 -2.7348 0 0 0 0.79771 1 11914 11914 6.2058 0.97511 1 3360 5634 2296 2342 3807 3807 -0.06444516636020126 ATTATFFKMPQ 11 Unmodified _ATTATFFKMPQ_ 0 0 0 nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L;ENST00000554375.5_1_14:76644623-76668191:+|nuORF nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.26904296875 2 621.812999 1241.61144 0.035896 2.2321E-05 3.7945 0.0023595 3.8304 0.0023818 621.8136953485403 55.156 0.21378 55.156 55.005 55.218 0 27 8 4 0 0 0 0.28226 1 30593 30593 12.241 4.0851 1 2631700 3361 1542 2297 2343 3808 3808 0.0003032394283764006 ATTESERNFV 10 Unmodified _ATTESERNFV_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.278076171875 2 577.277835 1152.54112 -0.3797 -0.00021919 0.088861 5.1297E-05 -0.29084 -0.0001679 577.2777034238145 27.243 0.19993 27.243 27.12 27.32 0 14 9 2 0 0 0 0.6785 1 14015 14015 5.2969 0.39987 1 2269400 + 3362 23192 2298 2344 3809 3809 -0.02905258121290899 ATTESERNFV 10 Unmodified _ATTESERNFV_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.278076171875 2 577.277835 1152.54112 0.56152 0.00032415 0.18722 0.00010808 0.74874 0.00043223 577.2781592162496 27.295 0.16569 27.248 27.141 27.306 -0.046408 12 7 2 0 0 0 0.57893 1 14051 14051 12.241 0 1 6149300 + 3363 23192 2298 2344 3810 3810 -0.02905258121290899 ATTESERNFV 10 Unmodified _ATTESERNFV_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 577.277835 1152.54112 -0.3797 -0.00021919 0.088861 5.1297E-05 -0.29084 -0.0001679 577.2777034238145 27.243 0.19993 27.243 27.12 27.32 0 -0.0029541 -4.2229E-05 NaN 12.241 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2269400 + 3364 23192 2298 2344 -0.02905258121290899 ATTESERNFV 10 Unmodified _ATTESERNFV_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.277835 1152.54112 0.56152 0.00032415 0.18722 0.00010808 0.74874 0.00043223 577.2781592162496 27.295 0.16569 27.248 27.141 27.306 -0.046408 0.0029541 7.1337E-05 NaN 12.241 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 6149300 + 3365 23192 2298 2344 -0.02905258121290899 ATTEVFKDP 9 Unmodified _ATTEVFKDP_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.258544921875 2 504.25584 1006.49713 0.088068 4.4409E-05 2.5667 0.0012943 2.6547 0.0013387 504.2573358165885 40.73 0.1375 40.73 40.62 40.758 0 15 7 3 0 0 0 0.078314 1 21884 21884 38.176 1.6694 1 5026200 3366 16123 2299 2345 3811 3811 -0.005862425476152566 ATTGDPAPLH 10 Unmodified _ATTGDPAPLH_ 0 0 0 ENSG00000104899|ENST00000221496|AMH ENSG00000104899|ENST00000221496|AMH ENSG00000104899|ENST00000221496|AMH MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2455749511719 2 490.245806 978.47706 1.0667 0.00052293 -0.6636 -0.00032532 0.40307 0.0001976 490.24503987713007 36.114 0.37325 31.921 31.664 32.037 -4.1928 48 22 3 0 0 0 0.60623 1 20957 20957 10.824 0.75 1 12864000 3367 2256 2300 2346 3812 3812 -0.013039934875905601 ATTGYGIAL 9 Unmodified _ATTGYGIAL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7340393066406 2 433.734543 865.454533 0.58944 0.00025566 -1.7089 -0.00074122 -1.1195 -0.00048556 433.73318108702324 53.885 0.19834 53.885 53.77 53.968 0 15 8 2 0 0 0 0.095405 1 29902 29902 34.102 1.797 1 923920 3368 2325;9151 2301 2347 3813 3813 0.0164240711480943 ATTYEERDAW 10 Unmodified _ATTYEERDAW_ 0 0 0 nc|ENSG00000204172|Q5VTM2|AGAP9;ENSG00000204172|ENST00000452145|AGAP9;ENST00000454844.1_1_10:46187592-46195676:+|nuORF;nc|ENSG00000261011|Q8TF27|AGAP11;AGAP6|p.S524Afs*69|1|0.14|ENSG00000204149|chr10:50009759-50009759|A/-|frameshift_variant;nc|ENSG00000264204|Q5VUJ5|AGAP7P;nc|ENSG00000204149|Q5VW22|AGAP6;nc|ENSG00000188234|Q96P64|AGAP4;ENSG00000204149|ENST00000412531|AGAP6;ENSG00000188234|ENST00000616763|AGAP4;ENSG00000172650|ENST00000374094|AGAP5;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1 nc|ENSG00000204172|Q5VTM2|AGAP9 nc|ENSG00000204172|Q5VTM2|AGAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2757568359375 2 621.275292 1240.53603 0.30772 0.00019118 -0.17668 -0.00010977 0.13104 8.141E-05 621.2751658994242 51.718 0.28106 51.718 51.583 51.864 0 45 12 5 0 0 0 0.18021 2 28535 28535;28660 36.127 11.136 1 39480000 3369 16500 2302 2348 3814;3815 3814 -0.07461561983882348 ATVGDFWDGF 10 Unmodified _ATVGDFWDGF_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7488403320312 2 557.745639 1113.47673 NaN NaN NaN NaN NaN NaN NaN 59.13 1 59.13 58.63 59.63 0 0 0 0 0.96627 1 32938 32938 4.3292 0.73274 1 3370 3136 2303 2349 3816 3816 -0.07547413207407772 ATVPGYVSFR 10 Unmodified _ATVPGYVSFR_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1964721679688 3 366.197708 1095.57129 0.33287 0.0001219 -0.065847 -2.4113E-05 0.26702 9.7782E-05 366.19764563803085 31.058 0.31254 30.956 30.767 31.08 -0.10269 33 12 4 0 0 0 0.63399 1 16096 16096 5.4027 0.5057 1 17620000 3371 16007 2304 2350 3817 3817 0.027331453345595946 ATVPGYVSFR 10 Unmodified _ATVPGYVSFR_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1981811523438 3 366.197708 1095.57129 1.5133 0.00055418 -0.36283 -0.00013287 1.1505 0.00042131 366.19756066544863 34.667 0.50269 30.572 30.366 30.869 -4.0951 87 29 4 0 0 0 0.63399 1 20076 20076 5.4027 0 1 130950000 3372 16007 2304 2350 3818 3818 0.027331453345595946 ATVRLEAEY 9 Unmodified _ATVRLEAEY_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2749633789062 2 526.274564 1050.53457 0.066337 3.4912E-05 -0.73623 -0.00038746 -0.66989 -0.00035255 526.273912228936 40.709 0.30704 40.709 40.451 40.758 0 20 16 2 0 0 0 0.40476 1 21896 21896 12.241 0.60036 1 2899000 + 3373 21600 2305 2351 3819 3819 0.011328487179980584 ATVSCSGSHHI 11 Unmodified _ATVSCSGSHHI_ 0 0 0 nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.75341796875 2 549.753472 1097.49239 NaN NaN NaN NaN NaN NaN NaN 57.476 1 56.986 56.486 57.486 -0.48974 0 0 0 0.93613 1 31237 31237 5.2969 1.3525 1 3374 997 2306 2352 3820 3820 -0.052454499620125716 ATVSLFIENYF 11 Unmodified _ATVSLFIENYF_ 0 0 0 REV__ENSG00000187037|ENST00000334425|GPR141 REV__ENSG00000187037|ENST00000334425|GPR141 MSMS AL20221201_MKP_PDAC_01 4 652.3310546875 2 652.332079 1302.6496 NaN NaN NaN NaN NaN NaN NaN 58.518 1 52.443 51.943 52.943 -6.0745 0 0 0 0.61053 1 37498 37498 20.415 4.2654 1 + 3375 23615 2307 2353 3821 3821 0.010385331291445254 ATVVWRPAL 9 Unmodified _ATVVWRPAL_ 0 0 0 REV__ENSG00000166682|ENST00000299882|TMPRSS5 REV__ENSG00000166682|ENST00000299882|TMPRSS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8014831542969 2 506.800552 1011.58655 0.12006 6.0845E-05 1.0439 0.00052905 1.164 0.00058989 506.8012369813741 37.773 0.31202 37.79 37.673 37.985 0.01704 23 14 2 0 0 0 0.48152 1 20138 20138 8.5933 2.2392 1 2999800 + 3376 22141 2308 2354 3822 3822 0.08122056922411502 ATWHWPNNL 9 Unmodified _ATWHWPNNL_ 0 0 0 REV__ENSG00000184012|ENST00000332149|TMPRSS2 REV__ENSG00000184012|ENST00000332149|TMPRSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7720947265625 2 569.775065 1137.53558 -0.50593 -0.00028826 -3.61 -0.0020569 -4.1159 -0.0023451 569.7729851880155 28.294 0.21933 28.294 28.149 28.368 0 15 10 2 0 0 0 0.5029 1 14633 14633 7.2892 0.56607 1 1046200 + 3377 23392 2309 2355 3823 3823 -0.02768892122435318 ATWKSNYFL 9 Unmodified _ATWKSNYFL_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000548568.5_1_12:120636605-120638589:-|nuORF;ENST00000547191.5_1_12:120637950-120638589:-|nuORF;ENST00000550423.5_1_12:120637928-120638589:-|nuORF;ENST00000549242.1_1_12:120637045-120638589:-|nuORF;ENST00000549098.5_1_12:120637179-120638589:-|nuORF nc|ENSG00000089157|P05388-2|RPLP0;ENST00000549098.5_1_12:120637179-120638589:-|nuORF nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2861328125 2 565.287474 1128.5604 -0.090778 -5.1316E-05 -1.4113 -0.00079776 -1.502 -0.00084908 565.2867960994672 34.04 0.22528 33.848 33.718 33.944 -0.19131 11 8 2 0 0 0 0.5029 1 17777 17777 7.2892 1.0834 1 1102100 3378 1518;15145 2310 2356 3824 3824 0.001257429602674165 ATWMAAMWSL 10 Unmodified _ATWMAAMWSL_ 0 0 0 REV__ENSG00000120334|ENST00000682279|CENPL REV__ENSG00000120334|ENST00000682279|CENPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.27001953125 2 584.269912 1166.52527 NaN NaN NaN NaN NaN NaN NaN 84.573 1 84.074 83.574 84.574 -0.49961 0 0 0 0.8671 1 46280 46280 9.3831 2.66 1 + 3379 19240 2311 2357 3825 3825 -0.051329591635521865 ATWQKSKDL 9 Unmodified _ATWQKSKDL_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.029052734375 3 359.529346 1075.56621 -0.29916 -0.00010756 1.4304 0.00051428 1.1313 0.00040672 359.5297777744634 23.253 0.26024 23.253 23.107 23.367 0 20 12 2 0 0 0 0.21798 1 11808 11808 1.1933 0 1 962850 3380 8348 2312 2358 3826 3826 0.03144841471953441 ATWTTYDL 8 Unmodified _ATWTTYDL_ 0 0 0 REV__ENSG00000076382|ENST00000321765|SPAG5 REV__ENSG00000076382|ENST00000321765|SPAG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7299499511719 2 485.729458 969.444362 0.60778 0.00029522 -0.0055562 -2.6988E-06 0.60222 0.00029252 485.72958815048014 45.536 0.53115 40.581 40.332 40.863 -4.9549 74 35 3 0 0 0 0.74163 1 27948 27948 13.508 0.97634 1 39877000 + 3381 17590 2313 2359 3827 3827 -0.041582006104363245 ATYAPDWY 8 Unmodified _ATYAPDWY_ 0 0 0 REV__ENST00000396103.7_1_22:45278889-45279051:-|nuORF REV__ENST00000396103.7_1_22:45278889-45279051:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7155151367188 2 493.71635 985.418148 NaN NaN NaN NaN NaN NaN NaN 24.338 1 24.338 23.838 24.838 0 0 0 0 0.97348 1 12435 12435 5.7604 0 1 + 3382 26499 2314 2360 3828 3828 -0.07514469781915523 ATYGHSQKK 9 Unmodified _ATYGHSQKK_ 0 0 0 nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2614440917969 2 510.267073 1018.51959 -0.3647 -0.0001861 0.7474 0.00038138 0.3827 0.00019528 510.2674039912308 34.477 0.24895 34.477 34.365 34.614 0 32 12 4 0 0 0 0.19891 1 18100 18100 11.64 11.64 1 14365000 3383 3571 2315 2361 3829 3829 0.011074016406610099 ATYLALGVL 9 Unmodified _ATYLALGVL_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 920.5458984375 1 920.545145 919.537869 1.5877 0.0014616 -1.4697 -0.001353 0.11801 0.00010864 920.543635198862 82.373 0.26097 82.435 82.321 82.582 0.062004 16 9 2 0 0 0 0.042911 1 45557 45557 48.346 5.3778 1 7609900 3384 8712 2316 2362 3830 3830 0.07488143562670757 ATYLALGVL 9 Unmodified _ATYLALGVL_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.544921875 1 920.545145 919.537869 0.6839 0.00062956 -0.43736 -0.00040261 0.24654 0.00022695 920.5445391528638 92.438 0.6386 86.262 85.921 86.56 -6.1757 59 38 2 0 0 0 0.038285 1 60923 60923 50.855 1.1861 1 14949000 3385 8712 2316 2362 3831 3831 0.07488143562670757 ATYRLCSEQL 10 Unmodified _ATYRLCSEQL_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-3|DNAH7;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF ENSG00000118997|ENST00000312428|DNAH7;ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2927856445312 2 592.29243 1182.57031 0.022271 1.3191E-05 -0.47918 -0.00028381 -0.45691 -0.00027062 592.2924261977532 35.835 0.61372 35.835 35.534 36.148 0 79 30 4 0 0 0 0.42143 1 19115 19115 20.415 2.2682 1 19210000 3386 6592;3407 2317 2363 3832 3832 -0.013674370966555216 ATYTGEGLY 9 Unmodified _ATYTGEGLY_ 0 0 0 REV__ENSG00000215018|ENST00000399429|COL28A1 REV__ENSG00000215018|ENST00000399429|COL28A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7267150878906 2 487.726915 973.439277 0.15648 7.6319E-05 -2.5164 -0.0012273 -2.3599 -0.001151 487.7256725590686 40.062 0.15799 40.062 39.973 40.131 0 10 7 2 0 0 0 0.16226 1 21528 21528 26.884 3.7352 1 1155500 + 3387 24332 2318 2364 3833 3833 -0.04850504473051842 AVAATAPGPEM 11 Unmodified _AVAATAPGPEM_ 0 0 0 ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A ENSG00000183955|ENST00000402868|KMT5A ENSG00000183955|ENST00000402868|KMT5A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2660522460938 2 507.749867 1013.48518 0.59233 0.00030076 -0.079822 -4.053E-05 0.51251 0.00026023 507.74939268206555 43.089 0.38207 38.324 38.111 38.493 -4.7648 34 24 2 0 0 0 0.27694 1 25987 25987 9.3831 0 1 14178000 3388 9211 2319 2365 3834 3834 -0.021021825624416124 AVADVTLQVH 10 Unmodified _AVADVTLQVH_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MSMS AL20221201_MKP_PDAC_01 4 526.7890014648438 2 526.790381 1051.56621 NaN NaN NaN NaN NaN NaN NaN 49.436 1 44.04 43.54 44.54 -5.3961 0 0 0 0.37462 1 30888 30888 32.786 0.4802 1 3389 4107 2320 2366 3835 3835 0.04248841471940068 AVAFFPNGYAF 11 Unmodified _AVAFFPNGYAF_ 0 0 0 ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000172354|P62879-2|GNB2 ENSG00000172354|ENST00000303210|GNB2 ENSG00000172354|ENST00000303210|GNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7960205078125 2 602.295299 1202.57605 0.13647 8.2196E-05 -0.26738 -0.00016104 -0.13091 -7.8844E-05 602.2953908709196 48.844 0.6225 43.447 43.039 43.661 -5.3961 92 37 3 0 0 0 0.6249 1 30426 30426 10.074 0.6908 1 97991000 3390 8205 2321 2367 3836 3836 -0.017139705226782098 AVAGALVYV 9 Unmodified _AVAGALVYV_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.5033569335938 1 862.503281 861.496004 0.40917 0.00035291 0.11039 9.5208E-05 0.51956 0.00044812 862.5034456985215 73.073 0.28976 73.073 72.905 73.195 0 21 12 2 0 0 0 0.22317 1 40631 40631 20.871 3.9289 1 1175700 + 3391 20412 2322 2368 3837 3837 0.059715878741258166 AVAGQDVPPEG 11 Unmodified _AVAGQDVPPEG_ 0 0 0 ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF ENST00000483208.5_2_15:42694887-42695976:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.255126953125 2 520.256371 1038.49819 -0.10819 -5.6285E-05 -1.3892 -0.00072274 -1.4974 -0.00077902 520.2552047563344 40.836 0.43543 40.836 40.701 41.137 0 67 40 2 0 0 0 0.019459 1 21946 21946 57.722 11.701 1 25734000 3392 14126 2323 2369 3838 3838 -0.019520281786981286 AVAGTTASVY 10 Unmodified _AVAGTTASVY_ 0 0 0 REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF REV__ENST00000515736.2_1_5:174938457-174940595:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2430419921875 2 470.242732 938.470912 1.17 0.00055016 -1.6539 -0.00077774 -0.48396 -0.00022758 470.2425128361712 54.119 0.35278 48.254 48.048 48.401 -5.8653 32 19 2 0 0 0 0.37389 2 34213 34213;34344 23.148 10.617 1 20002000 + 3393 18578 2324 2370 3839;3840 3839 -0.0007851171909578625 AVAHRLGKKKK 11 Unmodified _AVAHRLGKKKK_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MSMS AL20221201_MKP_PDAC_01 4 618.405517578125 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 102.92 1 96.745 96.245 97.245 -6.1757 0 0 0 0.94301 1 69040 69040 0.35063 0.043601 1 3394 4179 2325 2371 3841 3841 0.19060148333210236 AVAIPTFR 8 Unmodified _AVAIPTFR_ 0 0 0 nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.7611083984375 2 437.760895 873.507237 0.97033 0.00042477 -0.34849 -0.00015255 0.62185 0.00027222 437.76068548194155 66.807 0.44814 66.825 66.653 67.101 0.017357 51 21 3 0 0 0 0.40035 1 36612 36612 44.407 3.9584 1 33408000 3395 6984 2326 2372 3842 3842 0.06542409968267293 AVALTRKH 8 Unmodified _AVALTRKH_ 0 0 0 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2768249511719 2 448.277244 894.539935 -0.19941 -8.9389E-05 -0.26395 -0.00011832 -0.46336 -0.00020771 448.27706568539884 42.122 0.24057 41.816 41.701 41.941 -0.30682 23 11 3 0 0 0 0.32798 1 22334 22334 52.268 23.782 1 24630000 3396 4699 2327 2373 3843 3843 0.08844617091131113 AVALTRKH 8 Unmodified _AVALTRKH_ 0 0 0 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2767333984375 2 448.277244 894.539935 0.20815 9.3311E-05 -0.77202 -0.00034608 -0.56386 -0.00025277 448.27690968420376 41.817 0.26665 41.814 41.699 41.966 -0.0037003 28 12 3 0 0 0 0.44629 1 22367 22367 39.957 11.47 1 27407000 3397 4699 2327 2373 3844 3844 0.08844617091131113 AVALTRKH 8 Unmodified _AVALTRKH_ 0 0 0 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 ENSG00000135378|ENST00000257836|PRRG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2764282226562 2 448.277244 894.539935 0.60578 0.00027156 -1.6733 -0.00075012 -1.0676 -0.00047856 448.27629284157166 46.416 0.34954 41.336 41.143 41.492 -5.0805 50 32 2 0 0 0 0.52622 2 28611 28611;28767 32.305 10.559 1 114610000 3398 4699 2327 2373 3845;3846 3845 0.08844617091131113 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7535400390625 2 443.753267 885.491981 0.45969 0.00020399 0.095261 4.2272E-05 0.55495 0.00024626 443.7531544643823 50.123 0.33587 50.123 49.946 50.282 0 43 15 4 0 0 0 0.016184 2 27681 27565;27681 67.344 16.489 1 23618000 3399 660 2328 2374 3847;3848 3848 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4984130859375 1 886.499258 885.491981 0.22495 0.00019942 -0.11248 -9.9712E-05 0.11247 9.9704E-05 886.499220312302 50.106 0.29585 50.106 49.986 50.282 0 30 13 3 0 0 0 0.022193 2 27571 27571;27680 61.357 6.5839 1 9909900 3400 660 2328 2374 3849;3850 3849 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7528991699219 2 443.753267 885.491981 0.81871 0.00036331 -0.67206 -0.00029823 0.14666 6.508E-05 443.7529222185151 50.572 0.26631 50.158 50.032 50.298 -0.41351 28 12 3 0 0 0 0.023164 1 27199 27199 60.39 15.983 1 6149900 3401 660 2328 2374 3851 3851 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7536315917969 2 443.753267 885.491981 0.45513 0.00020196 0.74976 0.00033271 1.2049 0.00053467 443.7534771447343 58.102 0.47357 52.075 51.853 52.327 -6.0275 62 25 3 0 0 0 0.00856 2 37127 37127;37252 100.37 18.758 1 86899000 3402 660 2328 2374 3852;3853 3852 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.4981689453125 1 886.499258 885.491981 -0.36646 -0.00032487 -0.2351 -0.00020841 -0.60156 -0.00053328 886.4999465426116 58.079 0.36206 52.052 51.923 52.285 -6.0275 29 19 2 0 0 0 0.0067112 1 37235 37235 112.59 19.771 1 20259000 3403 660 2328 2374 3854 3854 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 886.499258 885.491981 0.22391 0.0001985 -0.51322 -0.00045497 -0.2893 -0.00025647 886.4993023653151 50.579 0.22662 50.166 50.032 50.258 -0.41351 0.029787 -0.00031457 NaN 61.357 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1994000 3404 660 2328 2374 0.04465498380432109 AVANIVNSV 9 Unmodified _AVANIVNSV_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 443.753267 885.491981 1.7658 0.00078356 -0.14937 -6.6281E-05 1.6164 0.00071728 443.75209855703116 50.186 0.16375 50.137 50.066 50.23 -0.048824 -0.0023497 6.9795E-05 NaN 67.344 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 978650 3405 660 2328 2374 0.04465498380432109 AVASFPKKQE 10 Unmodified _AVASFPKKQE_ 0 0 0 ENSG00000112695|ENST00000684430|COX7A2 ENSG00000112695|ENST00000684430|COX7A2 ENSG00000112695|ENST00000684430|COX7A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8735046386719 3 368.873113 1103.59751 1.7559 0.00064771 -1.2477 -0.00046026 0.50816 0.00018744 368.87247456231876 20.604 0.33683 17.911 17.666 18.002 -2.693 31 19 2 0 0 0 0.14944 1 10919 10919 39.923 15.041 1 10255000 3406 2909 2329 2375 3855 3855 0.04985414506040797 AVASFPKKQE 10 Unmodified _AVASFPKKQE_ 0 0 0 ENSG00000112695|ENST00000684430|COX7A2 ENSG00000112695|ENST00000684430|COX7A2 ENSG00000112695|ENST00000684430|COX7A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.2675170898438 2 552.806031 1103.59751 1.1566 0.00063936 -0.92218 -0.00050979 0.23438 0.00012957 552.8050358762083 20.552 0.15976 17.859 17.742 17.901 -2.693 12 7 2 0 0 0 0.19886 1 10930 10930 31.268 13.122 1 1414100 3407 2909 2329 2375 3856 3856 0.04985414506040797 AVASILQSL 9 Unmodified _AVASILQSL_ 0 0 0 nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1;ENST00000522492.1_1_5:148651531-148685943:+|nuORF;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF nc|ENSG00000157510|Q8TED9-2|AFAP1L1 nc|ENSG00000157510|Q8TED9-2|AFAP1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2720031738281 2 451.271293 900.528032 0.30193 0.00013625 2.0534 0.00092666 2.3554 0.0010629 451.2723499694663 76.045 0.53468 75.565 75.252 75.787 -0.47945 57 22 3 0 0 0 0.045537 1 41718 41718 46.921 6.4723 1 7851700 3408 6525 2330 2376 3857 3857 0.07378955557271638 AVASLGLYGL 10 Unmodified _AVASLGLYGL_ 0 0 0 REV__ENST00000522863.1_1_7:27224765-27224843:+|nuORF REV__ENST00000522863.1_1_7:27224765-27224843:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5535888671875 1 963.550959 962.543683 0.78802 0.00075929 0.12959 0.00012487 0.91761 0.00088416 963.5509629857021 63.448 0.37458 57.273 57.094 57.469 -6.1757 35 21 2 0 0 0 0.2178 1 40925 40925 32.305 1.6689 1 20818000 + 3409 28306 2331 2377 3858 3858 0.06091242074330694 AVASLGPDGV 10 Unmodified _AVASLGPDGV_ 0 0 0 REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2381896972656 2 443.23745 884.460347 0.82888 0.00036739 -0.09096 -4.0317E-05 0.73792 0.00032707 443.23743510044284 49.116 0.3852 43.72 43.588 43.973 -5.3961 44 25 2 0 0 0 0.0093317 1 30621 30621 88.904 3.6316 1 65014000 + 3410 25311 2332 2378 3859 3859 0.013495056264787308 AVATELLQL 9 Unmodified _AVATELLQL_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.76416015625 2 479.2844 956.554247 0.78285 0.00037521 0.27787 0.00013318 1.0607 0.00050839 479.28480505936807 64.328 0.27568 63.843 63.739 64.014 -0.48512 30 12 3 0 0 0 0.17666 1 35055 35055 19.439 0 1 2229600 + 3411 23951 2333 2379 3860 3860 0.07423224728779587 AVCEVALDY 9 Carbamidomethyl (C) _AVC(Carbamidomethyl (C))EVALDY_ AVC(1)EVALDY AVC(44)EVALDY 0 1 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2421875 2 520.241875 1038.4692 1.1628 0.00060493 -0.17687 -9.2015E-05 0.98592 0.00051292 520.2416095946189 61.326 0.53056 55.179 54.901 55.432 -6.1478 88 26 5 0 0 0 0.052168 1 39589 39589 44.407 27.465 1 260840000 3412 3108 2334 2380 3861 3861 321 -0.048498887993673634 AVCEVVTQF 9 Carbamidomethyl (C) _AVC(Carbamidomethyl (C))EVVTQF_ AVC(1)EVVTQF AVC(57)EVVTQF 0 1 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7559204101562 2 526.757692 1051.50083 1.457 0.00076748 -1.4353 -0.00075604 0.021725 1.1444E-05 526.7572550321736 64.069 0.51667 57.893 57.669 58.186 -6.1757 79 27 4 0 0 0 0.026094 2 41385 41385;41520 57.471 32.797 1 85832000 3413 3863 2335 2381 3862;3863 3862 390 -0.0228589604539593 AVCGFIDGPQH 11 Unmodified _AVCGFIDGPQH_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8471069335938 3 381.846569 1142.51788 -0.087812 -3.3531E-05 0.68018 0.00025973 0.59237 0.0002262 381.8464910498499 69.829 0.26696 69.35 69.134 69.401 -0.47903 18 11 3 0 0 0 0.73115 1 38159 38159 0.45452 0.087843 1 588340 + 3414 21252 2336 2382 3864 3864 -0.04767975439608563 AVDDSPGLFF 10 Unmodified _AVDDSPGLFF_ 0 0 0 ENST00000589590.1_1_19:12841583-12841658:-|nuORF ENST00000589590.1_1_19:12841583-12841658:-|nuORF ENST00000589590.1_1_19:12841583-12841658:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2553100585938 2 534.25584 1066.49713 0.32895 0.00017574 -0.80339 -0.00042922 -0.47444 -0.00025347 534.2554948734459 56.739 0.4782 56.739 56.609 57.087 0 37 20 2 0 0 0 0.24625 1 31564 31564 30.637 12.502 1 6486700 3415 15672 2337 2383 3865 3865 -0.03346242547604561 AVDEHQDNVFF 11 Unmodified _AVDEHQDNVFF_ 0 0 0 nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522;nc|ENSG00000162522|Q9P206-4|NHSL3 nc|ENSG00000162522|Q9P206|NHSL3 nc|ENSG00000162522|Q9P206|NHSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8678894042969 3 440.866687 1319.57823 0.95534 0.00042118 1.9151 0.00084432 2.8705 0.0012655 440.8675442644453 46.174 0.27996 46.174 45.994 46.274 0 21 12 2 0 0 0 0.50515 1 25224 25224 9.2438 2.2067 1 3430200 3416 6870 2338 2384 3866 3866 -0.06877586575546957 AVDFYSGK 8 Unmodified _AVDFYSGK_ 0 0 0 nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;ENST00000503808.5_1_4:57204874-57250274:-|nuORF nc|ENSG00000157426|Q4L235-2|AASDH;ENST00000503808.5_1_4:57204874-57250274:-|nuORF nc|ENSG00000157426|Q4L235-2|AASDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4310913085938 1 886.430509 885.423233 0.16293 0.00014442 -0.24026 -0.00021297 -0.077331 -6.8548E-05 886.430437384768 58.393 0.35514 58.393 58.179 58.535 0 18 13 2 0 0 0 0.73714 1 32478 32478 13.906 1.3745 1 462090 3417 6518;14478 2339 2385 3867 3867 -0.024061659192852858 AVDGALSL 8 Unmodified _AVDGALSL_ 0 0 0 REV__ENSG00000010292|ENST00000315579|NCAPD2 REV__ENSG00000010292|ENST00000315579|NCAPD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 745.3525390625 1 745.409046 744.401769 0.022551 1.681E-05 -0.8687 -0.00064754 -0.84615 -0.00063073 745.4083255685223 70.477 0.37983 70 69.845 70.225 -0.47735 62 34 2 0 0 0 8.7369 1 38472 38472 30.225 1.738 1 9787900 + 3418 17044 2340 2386 3868 3868 0.019344490519983992 AVDGALSL 8 Unmodified _AVDGALSL_ 0 0 0 REV__ENSG00000010292|ENST00000315579|NCAPD2 REV__ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 745.409046 744.401769 -0.10999 -8.1985E-05 -0.90378 -0.00067369 -1.0138 -0.00075567 745.4083542003649 70.002 0.46345 70.002 69.816 70.28 0 0.00098145 -1.2988E-05 NaN 30.225 101 54 2 NaN NaN NaN NaN 0 NaN NaN 0 10082000 + 3419 17044 2340 2386 0.019344490519983992 AVDGLLTYT 9 Unmodified _AVDGLLTYT_ 0 0 0 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7532653808594 2 476.752933 951.491313 0.24851 0.00011848 -0.078499 -3.7425E-05 0.17001 8.1055E-05 476.7528570500935 65.787 0.52773 65.787 65.503 66.03 0 66 25 4 0 0 0 0.095405 1 36612 36612 34.102 1.797 1 30659000 + 3420 21515 2341 2387 3869 3869 0.0136265894071812 AVDGLLTYT 9 Unmodified _AVDGLLTYT_ 0 0 0 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 476.752933 951.491313 0.85583 0.00040802 -0.59026 -0.00028141 0.26557 0.00012661 476.75271702031193 65.867 0.18439 65.877 65.747 65.932 0.0095596 0.043767 -0.00051516 NaN 34.102 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2265800 + 3421 21515 2341 2387 0.0136265894071812 AVDLNCAKDF 10 Unmodified _AVDLNCAKDF_ 0 0 0 REV__ENSG00000166532|ENST00000535829|RIMKLB REV__ENSG00000166532|ENST00000535829|RIMKLB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8070983886719 3 365.842825 1094.50665 0.68388 0.00025019 -2.776 -0.0010156 -2.0921 -0.00076538 365.84256092637327 66.825 0.29422 66.843 66.713 67.007 0.018028 31 13 4 0 0 0 0.23723 1 36663 36663 3.8763 3.0998 1 3291200 + 3422 22130 2342 2388 3870 3870 -0.03682797533747362 AVDPDQEMLM 10 Unmodified _AVDPDQEMLM_ 0 0 0 REV__ENSG00000173145|ENST00000371361|NOC3L REV__ENSG00000173145|ENST00000371361|NOC3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1727294921875 3 383.503592 1147.48895 0.58812 0.00022554 0.20322 7.7937E-05 0.79134 0.00030348 383.50363124988854 12.273 0.4239 9.7914 9.6817 10.106 -2.482 303 160 3 0 0 0 0.71123 1 6164 6164 0.69767 0.24315 1 9891300 + 3423 22705 2343 2389 3871 3871 -0.0788988085089386 AVDPNRAVPL 10 Unmodified _AVDPNRAVPL_ 0 0 0 nc|ENSG00000048162|Q9Y3C1-3|NOP16;ENST00000504821.1_1_5:175813909-175815568:-|nuORF;ENST00000510608.1_1_5:175813700-175815552:-|nuORF;nc|ENSG00000048162|Q9Y3C1-2|NOP16;ENSG00000048162|ENST00000614830|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16;ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2979125976562 2 526.298373 1050.58219 0.13038 6.8619E-05 -0.15866 -8.3501E-05 -0.028276 -1.4882E-05 526.2979848194327 40.545 0.20757 40.545 40.432 40.639 0 25 10 3 0 0 0 0.051223 1 21787 21787 57.722 34.986 1 8554500 3424 16027;698 2344 2390 3872 3872 0.058925477088678235 AVDPNRAVPL 10 Unmodified _AVDPNRAVPL_ 0 0 0 nc|ENSG00000048162|Q9Y3C1-3|NOP16;ENST00000504821.1_1_5:175813909-175815568:-|nuORF;ENST00000510608.1_1_5:175813700-175815552:-|nuORF;nc|ENSG00000048162|Q9Y3C1-2|NOP16;ENSG00000048162|ENST00000614830|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16;ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2982788085938 2 526.298373 1050.58219 0.56057 0.00029503 0.0035956 1.8924E-06 0.56417 0.00029692 526.2981957580083 46.288 0.26612 41.333 41.135 41.401 -4.9549 30 17 2 0 0 0 0.087043 1 28553 28553 49.554 26.818 1 20107000 3425 16027;698 2344 2390 3873 3873 0.058925477088678235 AVDQLPAL 8 Unmodified _AVDQLPAL_ 0 0 0 REV__ENSG00000174004|ENST00000328557|NRROS REV__ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7371215820312 2 413.737086 825.459619 0.59511 0.00024622 -0.56431 -0.00023348 0.030801 1.2743E-05 413.7370055099218 78.331 1.0083 72.155 71.754 72.762 -6.1757 105 60 2 0 0 0 0.46494 1 51478 51478 38.151 0 1 76423000 + 3426 22763 2345 2391 3874 3874 0.03990710977404888 AVDWMGDNLY 10 Unmodified _AVDWMGDNLY_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2589721679688 2 592.258056 1182.50156 -0.02952 -1.7483E-05 2.4314 0.00144 2.4019 0.0014226 592.259464041373 46.967 0.22398 46.967 46.879 47.103 0 22 10 3 0 0 0 0.24625 1 25709 25709 30.637 2.4633 1 4035000 3427 3705 2346 2392 3875 3875 -0.0823910139633881 AVDWPYNF 8 Unmodified _AVDWPYNF_ 0 0 0 REV__ENSG00000206557|ENST00000383763|TRIM71 REV__ENSG00000206557|ENST00000383763|TRIM71 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7346801757812 2 506.232168 1010.44978 0.43621 0.00022082 0.54402 0.0002754 0.98022 0.00049622 506.2323422604775 89.951 0.27244 89.951 89.822 90.095 0 37 21 2 0 0 0 0.80143 1 49822 49822 5.7604 2.8712 1 465040 + 3428 24259 2347 2393 3876 3876 -0.05502477027948771 AVEAKEAQL 9 Unmodified _AVEAKEAQL_ 0 0 0 REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.76416015625 2 479.763832 957.513111 0.79198 0.00037996 1.224 0.00058724 2.016 0.00096721 479.76475674622134 64.272 0.3166 63.787 63.654 63.971 -0.48512 26 14 3 0 0 0 0.12841 1 35055 35055 30.225 1.738 1 1359100 + 3429 29161 2348 2394 3877 3877 0.032654636892857525 AVEDDVFIPLY 11 Unmodified _AVEDDVFIPLY_ 0 0 0 ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-2|GCFC2 ENSG00000005436|ENST00000321027|GCFC2 ENSG00000005436|ENST00000321027|GCFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.8281860351562 2 640.824086 1279.63362 0.04876 3.1247E-05 4.1881 0.0026838 4.2368 0.0027151 640.8271041901903 31.487 0.16281 31.487 31.379 31.541 0 11 7 2 0 0 0 0.67922 1 16409 16409 6.2058 0.9089 1 774350 3430 307 2349 2395 3878 3878 0.0049882689224887145 AVEEQIEYLQ 10 Unmodified _AVEEQIEYLQ_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8710632324219 3 407.871438 1220.59248 -1.1432 -0.00046629 1.3705 0.00055898 0.22725 9.269E-05 407.8717712969383 32.696 0.40792 32.696 32.481 32.889 0 48 21 3 0 0 0 0.65471 1 17061 17061 7.9454 5.1021 1 5698700 3431 6408 2350 2396 3879 3879 -0.008989341472442902 AVEKLQNNVH 10 Unmodified _AVEKLQNNVH_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2587280273438 2 576.312012 1150.60947 -0.22692 -0.00013077 0.12808 7.3813E-05 -0.098838 -5.6962E-05 576.3122407126934 28.902 0.18171 28.902 28.761 28.943 0 11 8 2 0 0 0 0.23227 1 14924 14924 10.824 0.75 1 490820 3432 8268 2351 2397 3880 3880 0.04019031249231375 AVEKLQNNVH 10 Unmodified _AVEKLQNNVH_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.312012 1150.60947 0.26782 0.00015435 0.68792 0.00039645 0.95574 0.0005508 576.3124496658311 28.995 0.15868 29.025 28.943 29.102 0.030106 0.061713 0.00027448 NaN 10.824 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1593000 3433 8268 2351 2397 0.04019031249231375 AVEKSMNTF 9 Unmodified _AVEKSMNTF_ 0 0 0 ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2774658203125 2 513.749867 1025.48518 0.1804 9.2682E-05 -0.69303 -0.00035605 -0.51263 -0.00026336 513.7495935569187 62.523 0.27176 62.523 62.432 62.704 0 20 13 2 0 0 0 0.19298 1 34831 34831 13.508 1.8676 1 1752700 3434 39 2352 2398 3881 3881 -0.026541825624462945 AVEPGRPPL 9 Unmodified _AVEPGRPPL_ 0 0 0 ENSG00000168159|ENST00000305943|RNF187 ENSG00000168159|ENST00000305943|RNF187 ENSG00000168159|ENST00000305943|RNF187 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2684936523438 2 468.269084 934.523616 -0.091292 -4.2749E-05 -0.39866 -0.00018668 -0.48995 -0.00022943 468.2688143461588 35.156 0.32584 35.156 34.939 35.265 0 29 16 2 0 0 0 0.14602 1 18526 18526 28.487 5.3384 1 4067400 3435 7725 2353 2399 3882 3882 0.053734911343553904 AVEQRQRQL 9 Unmodified _AVEQRQRQL_ 0 0 0 ENSG00000197982|ENST00000373042|C1orf122 ENSG00000197982|ENST00000373042|C1orf122 ENSG00000197982|ENST00000373042|C1orf122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3198852539062 2 564.317628 1126.6207 0.67608 0.00038152 1.3097 0.00073907 1.9858 0.0011206 564.3187640266635 84.497 0.29498 83.997 83.841 84.136 -0.49961 34 13 3 0 0 0 0.48152 1 46210 46210 8.5933 0 1 1652500 3436 10033 2354 2400 3883 3883 0.06245853343375529 AVEQRQRQL 9 Unmodified _AVEQRQRQL_ 0 0 0 ENSG00000197982|ENST00000373042|C1orf122 ENSG00000197982|ENST00000373042|C1orf122 ENSG00000197982|ENST00000373042|C1orf122 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 564.317628 1126.6207 0.29748 0.00016787 2.5149 0.0014192 2.8124 0.0015871 564.3191008418976 84.006 0.36597 84.006 83.816 84.182 0 0.0040508 0.00033945 NaN 8.5933 50 18 4 NaN NaN NaN NaN 0 NaN NaN 0 3067200 3437 10033 2354 2400 0.06245853343375529 AVERPQAHRL 10 Unmodified _AVERPQAHRL_ 0 0 0 ENSG00000100599|ENST00000216487|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF ENSG00000100599|ENST00000216487|RIN3 ENSG00000100599|ENST00000216487|RIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8915710449219 3 392.891389 1175.65234 1.2622 0.0004959 -0.61514 -0.00024168 0.64705 0.00025422 392.8911287422541 19.512 0.33072 16.856 16.699 17.03 -2.6564 81 30 3 0 0 0 0.34435 1 10390 10390 24.882 2.2235 1 28350000 3438 1849 2355 2401 3884 3884 0.07153846097321548 AVERWYRH 8 Unmodified _AVERWYRH_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.861328125 3 372.86143 1115.56246 -0.53187 -0.00019831 0.20787 7.7505E-05 -0.32401 -0.00012081 372.86145908611223 18.383 0.3511 18.383 18.26 18.611 0 81 44 3 0 0 0 0.80148 1 9126 9126 5.7319 0.43497 1 11052000 + 3439 28850 2356 2402 3885 3885 0.009302164887458275 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 794.409912109375 2 793.908008 1585.80146 -0.0075948 -6.0295E-06 1.846 0.0014656 1.8384 0.0014595 793.909239135835 79.813 0.20193 79.813 79.709 79.911 0 14 8 2 0 0 0 0.74157 1 44316 44316 0.35063 0.081612 1 478530 + 3440 28850 2357 2403 3886 3886 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 793.9092407226562 2 793.908008 1585.80146 NaN NaN NaN NaN NaN NaN NaN 78.324 1 78.324 77.824 78.824 0 0 0 0 0.94301 1 43528 43528 0.35063 0.081612 1 + 3441 28850 2357 2403 3887 3887 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 794.4108276367188 2 793.908008 1585.80146 0.56099 0.00044537 2.9395 0.0023337 3.5005 0.0027791 793.9099701919339 80.305 0.24342 79.816 79.689 79.932 -0.48932 23 9 3 0 0 0 0.74157 1 43977 43977 0.35063 0.043601 1 786220 + 3442 28850 2357 2403 3888 3888 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 794.4125366210938 2 793.908008 1585.80146 0.13482 0.00010703 2.1936 0.0017415 2.3284 0.0018485 793.9096228973688 86.143 0.28849 85.64 85.544 85.833 -0.50318 28 11 3 0 0 0 0.73115 1 47132 47132 1.3295 1.0225 1 1210100 + 3443 28850 2357 2403 3889 3889 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 793.9094848632812 2 793.908008 1585.80146 NaN NaN NaN NaN NaN NaN NaN 78.866 1 78.38 77.88 78.88 -0.48596 0 0 0 0.94301 1 43194 43194 0.35063 0.081612 1 + 3444 28850 2357 2403 3890 3890 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 793.9094848632812 2 793.908008 1585.80146 -0.21968 -0.00017441 1.8931 0.0015029 1.6734 0.0013285 793.9097376001231 78.823 0.18135 78.337 78.213 78.394 -0.48596 9 6 2 0 0 0 0.30598 1 43194 43194 0.35063 0.081612 1 734110 + 3445 28850 2357 2403 3891 3891 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 793.908008 1585.80146 -0.0064934 -5.1551E-06 2.5689 0.0020395 2.5624 0.0020343 794.4119510298168 85.703 0.25786 85.703 85.559 85.817 0 0.0318 0.0002946 NaN 1.3295 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 810440 + 3446 28850 2357 2403 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 793.908008 1585.80146 -0.0075948 -6.0295E-06 1.846 0.0014656 1.8384 0.0014595 793.909239135835 79.813 0.20193 79.813 79.709 79.911 0 -0.0014729 -0.0009504 NaN 0.35063 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 478530 + 3447 28850 2357 2403 0.031993717200748506 AVERWYRHQWR 11 Unmodified _AVERWYRHQWR_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 793.908008 1585.80146 0.56099 0.00044537 2.9395 0.0023337 3.5005 0.0027791 793.9099701919339 80.305 0.24342 79.816 79.689 79.932 -0.48932 0.0014729 0.00078586 NaN 0.35063 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 786220 + 3448 28850 2357 2403 0.031993717200748506 AVETYVKF 8 Unmodified _AVETYVKF_ 0 0 0 ENST00000467604.5_1_3:118931398-118931611:-|nuORF ENST00000467604.5_1_3:118931398-118931611:-|nuORF ENST00000467604.5_1_3:118931398-118931611:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2767333984375 2 478.758018 955.501483 0.36981 0.00017705 -0.25183 -0.00012057 0.11798 5.6484E-05 478.7577136196405 68.929 0.32054 68.929 68.764 69.084 0 23 13 2 0 0 0 8.7369 1 38472 38472 14.582 1.0738 1 739550 3449 13784 2358 2404 3892 3892 0.021952666659558417 AVEVGRFG 8 Unmodified _AVEVGRFG_ 0 0 0 ENST00000429791.5_1_2:242255688-242255784:+|nuORF ENST00000429791.5_1_2:242255688-242255784:+|nuORF ENST00000429791.5_1_2:242255688-242255784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.7277221679688 2 417.727052 833.439552 0.92261 0.0003854 1.7114 0.0007149 2.634 0.0011003 417.72691670268665 68.118 0.53248 61.943 61.707 62.239 -6.1757 65 31 3 0 0 0 0.58902 1 44595 44595 26.884 3.7352 1 42336000 3450 13221 2359 2405 3893 3893 0.016169600374723814 AVEYRGQGAY 10 Unmodified _AVEYRGQGAY_ 0 0 0 REV__nc|ENSG00000104892|Q6P597-2|KLC3 REV__nc|ENSG00000104892|Q6P597-2|KLC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.8816833496094 3 371.848967 1112.52507 1.7059 0.00063434 0.82899 0.00030826 2.5349 0.0009426 371.84935193833593 20.31 0.25609 17.617 17.525 17.781 -2.693 23 14 2 0 0 0 0.23634 1 10820 10820 3.5871 0 1 2619800 + 3451 18385 2360 2406 3894 3894 -0.026689195675317023 AVFFEQKNL 9 Unmodified _AVFFEQKNL_ 0 0 0 REV__ENSG00000085832|ENST00000371733|EPS15 REV__ENSG00000085832|ENST00000371733|EPS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7994995117188 2 548.295299 1094.57605 0.49915 0.00027368 -1.0065 -0.00055184 -0.50732 -0.00027816 548.295384113385 72.061 0.44486 71.585 71.242 71.686 -0.47609 46 17 4 0 0 0 0.34999 1 39345 39345 14.838 1.7958 1 4286900 + 3452 17757 2361 2407 3895 3895 0.03254029477329823 AVFWWNSLAI 10 Unmodified _AVFWWNSLAI_ 0 0 0 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2135925292969 3 402.88172 1205.62333 -0.10046 -4.0472E-05 -0.96324 -0.00038807 -1.0637 -0.00042854 402.88181135646875 19.308 0.33112 19.316 19.101 19.432 0.0078487 34 20 3 0 0 0 0.71123 1 9764 9764 0.69767 0.24315 1 842210 + 3453 19492 2362 2408 3896 3896 0.028743087483235286 AVFYTIFT 8 Unmodified _AVFYTIFT_ 0 0 0 ENSG00000169488|ENST00000305051|OR4K15 ENSG00000169488|ENST00000305051|OR4K15 ENSG00000169488|ENST00000305051|OR4K15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2552185058594 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 26.076 1 26.103 25.603 26.603 0.026951 0 0 0 0.97444 1 13518 13518 0.69038 0 1 3454 7877 2363 2409 3897 3897 0.01384168154299914 AVGEHVFAV 9 Unmodified _AVGEHVFAV_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.729736328125 2 464.747985 927.481417 1.1917 0.00055383 -0.0080643 -3.7479E-06 1.1836 0.00055008 464.74798297864714 46.09 0.253 46.09 45.957 46.21 0 17 11 2 0 0 0 0.1474 1 25156 25156 28.487 6.7402 1 2083600 3455 5359 2364 2410 3898 3898 0.014775157260032756 AVGEIHMKTM 10 Unmodified _AVGEIHMKTM_ 0 0 0 ENSG00000107282|ENST00000265381|APBA1;nc|ENSG00000107282|Q02410-2|APBA1 ENSG00000107282|ENST00000265381|APBA1 ENSG00000107282|ENST00000265381|APBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7810668945312 2 558.780644 1115.54674 1.1061 0.00061806 0.2648 0.00014797 1.3709 0.00076603 558.7806888044037 48.559 0.26775 43.162 43.069 43.337 -5.3961 26 15 2 0 0 0 0.33553 1 30255 30255 25.399 3.6527 1 38601000 3456 2487 2365 2411 3899 3899 -0.006415741348291704 AVGLAVLNV 9 Unmodified _AVGLAVLNV_ 0 0 0 ENST00000493197.5_1_5:177638946-177656967:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL;nc|ENSG00000175309|Q8IUZ5-3|PHYKPL;ENST00000481811.5_1_5:177638924-177642644:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 855.5283203125 1 855.52983 854.522553 -0.037027 -3.1677E-05 -0.47894 -0.00040975 -0.51597 -0.00044142 855.5293056256384 84.502 0.2719 84.002 83.864 84.136 -0.49961 19 12 2 0 0 0 0.37804 1 46198 46198 13.508 0 1 1157800 3457 8507 2366 2412 3900 3900 0.0894727676545699 AVGLAVLNV 9 Unmodified _AVGLAVLNV_ 0 0 0 ENST00000493197.5_1_5:177638946-177656967:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL;nc|ENSG00000175309|Q8IUZ5-3|PHYKPL;ENST00000481811.5_1_5:177638924-177642644:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.26806640625 2 428.268553 854.522553 NaN NaN NaN NaN NaN NaN NaN 93.73 1 87.554 87.054 88.054 -6.1757 0 0 0 0.27711 1 62057 62057 26.341 0 1 3458 8507 2366 2412 3901 3901 0.0894727676545699 AVGQQEGSHGL 11 Unmodified _AVGQQEGSHGL_ 0 0 0 nc|ENSG00000070476|Q2QGD7-3|ZXDC;nc|ENSG00000070476|Q2QGD7-2|ZXDC;ENSG00000070476|ENST00000389709|ZXDC nc|ENSG00000070476|Q2QGD7-3|ZXDC nc|ENSG00000070476|Q2QGD7-3|ZXDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2442016601562 2 541.764894 1081.51524 -0.35945 -0.00019474 -1.4998 -0.00081253 -1.8592 -0.0010073 541.7634628954487 35.089 0.11261 35.089 35.016 35.129 0 6 5 2 0 0 0 0.28953 1 18538 18538 13.042 7.7456 1 1036300 3459 1030 2367 2413 3902 3902 -0.022261075728920332 AVGSPHVAL 9 Unmodified _AVGSPHVAL_ 0 0 0 REV__ENSG00000187608|ENST00000649529|ISG15 REV__ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.7427368164062 2 425.742702 849.470852 -0.56775 -0.00024172 0.48338 0.0002058 -0.084368 -3.5919E-05 425.7429454973148 33.9 0.25946 33.9 33.765 34.025 0 32 12 4 0 0 0 0.052168 1 17783 17783 44.407 6.2558 1 14589000 + 3460 23645 2368 2414 3903 3903 0.04009533071575788 AVGWDNMAF 9 Unmodified _AVGWDNMAF_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7405090332031 2 505.723652 1009.43275 -0.27878 -0.00014099 -3.4098 -0.0017244 -3.6886 -0.0018654 505.72184407645847 70.261 0.23894 69.782 69.653 69.892 -0.47903 17 10 3 0 0 0 0.20528 1 38486 38486 8.5933 1.304 1 815250 3461 5001 2369 2415 3904 3904 -0.071587209054087 AVGYVKDKDL 10 Unmodified _AVGYVKDKDL_ 0 0 0 REV__ENSG00000215262|ENST00000399881|KCNU1 REV__ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8730773925781 3 369.873001 1106.59717 -0.32839 -0.00012146 0.99021 0.00036625 0.66182 0.00024479 369.8732335375733 22.928 0.16836 22.928 22.847 23.015 0 13 9 2 0 0 0 0.66569 1 11680 11680 3.5871 0 1 783100 + 3462 24339 2370 2416 3905 3905 0.04813994786195508 AVHADKYW 8 Unmodified _AVHADKYW_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.243896484375 2 495.245609 988.476666 NaN NaN NaN NaN NaN NaN NaN 17.67 1 17.684 17.184 18.184 0.013865 0 0 0 0.97444 1 8805 8805 5.2307 0 1 + 3463 17703 2371 2417 3906 3906 -0.018033684167789943 AVHARVMAF 9 Unmodified _AVHARVMAF_ 0 0 0 REV__nc|ENSG00000111731|Q86YS7-2|C2CD5 REV__nc|ENSG00000111731|Q86YS7-2|C2CD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2687072753906 2 501.271104 1000.52766 NaN NaN NaN NaN NaN NaN NaN 60.519 1 60.029 59.529 60.529 -0.48932 0 0 0 0.57317 1 32957 32957 13.508 1.8676 1 + 3464 29573 2372 2418 3907 3907 0.027412573564333798 AVHDITVAY 9 Unmodified _AVHDITVAY_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7583923339844 2 494.758549 987.502546 0.22729 0.00011245 -0.3202 -0.00015842 -0.092918 -4.5972E-05 494.75836220504453 39.497 0.39823 39.497 39.302 39.7 0 42 18 3 0 0 0 0.013472 2 21228 21111;21228 70.716 40.491 1 116370000 3465 8274 2373 2419 3908;3909 3909 0.00829481034827495 AVHDITVAY 9 Unmodified _AVHDITVAY_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2608337402344 2 494.758549 987.502546 0.18698 9.251E-05 -0.75275 -0.00037243 -0.56577 -0.00027992 494.75859806261116 39.786 0.29805 39.489 39.351 39.649 -0.29716 25 14 3 0 0 0 0.19613 1 20972 20972 12.532 0 1 4287400 3466 8274 2373 2419 3910 3910 0.00829481034827495 AVHDITVAY 9 Unmodified _AVHDITVAY_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7588500976562 2 494.758549 987.502546 0.57366 0.00028382 -0.43781 -0.00021661 0.13585 6.7212E-05 494.7585128003086 44.906 0.65511 40.054 39.759 40.414 -4.852 129 48 4 0 0 0 0.023164 2 27422 27422;27564 60.39 30.165 1 232260000 3467 8274 2373 2419 3911;3912 3911 0.00829481034827495 AVHKKNNK 8 Unmodified _AVHKKNNK_ 0 0 0 ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.7804260253906 2 469.780151 937.545748 0.093507 4.3928E-05 0.72765 0.00034183 0.82115 0.00038576 469.78041825273203 28.157 0.22542 28.187 28.083 28.308 0.029564 12 8 2 0 0 0 0.78849 1 14676 14676 9.3474 1.4373 1 1687900 3468 7462 2374 2420 3913 3913 0.0744771560279105 AVHPSGVAL 9 Unmodified _AVHPSGVAL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2588500976562 2 425.742702 849.470852 -0.56775 -0.00024172 0.48338 0.0002058 -0.084368 -3.5919E-05 425.7429454973148 33.9 0.25946 33.9 33.765 34.025 0 32 12 4 0 0 0 0.13712 1 17880 17880 30.225 5.5509 1 14589000 3469 9571 2375 2421 3914 3914 0.04009533071575788 AVHPSGVAL 9 Unmodified _AVHPSGVAL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.743408203125 2 425.742702 849.470852 -0.26801 -0.0001141 0.98878 0.00042096 0.72077 0.00030686 425.7433244678077 34.001 0.27599 33.809 33.668 33.944 -0.19131 18 10 2 0 0 0 0.12841 1 17753 17753 30.225 1.738 1 1644700 3470 9571 2375 2421 3915 3915 0.04009533071575788 AVHPSGVAL 9 Unmodified _AVHPSGVAL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.7427673339844 2 425.742702 849.470852 1.1568 0.00049249 -1.5117 -0.00064361 -0.35494 -0.00015111 425.7424337785198 38.13 0.39883 33.761 33.565 33.964 -4.3689 51 23 4 0 0 0 0.078417 1 22432 22432 38.151 2.107 1 43302000 3471 9571 2375 2421 3916 3916 0.04009533071575788 AVIEDTWHY 9 Unmodified _AVIEDTWHY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2661743164062 2 567.266739 1132.51892 0.86101 0.00048842 0.20416 0.00011581 1.0652 0.00060424 567.26674260221 51.131 0.5888 51.131 51.014 51.603 0 54 27 3 0 0 0 0.044011 1 28185 28185 63.563 27.436 1 8053000 3472 741 2376 2422 3917 3917 -0.042034377990376015 AVIEDTWHY 9 Unmodified _AVIEDTWHY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2672729492188 2 567.266739 1132.51892 1.1441 0.00064901 0.46274 0.0002625 1.6069 0.00091151 567.2671846485497 57.646 0.30733 51.618 51.41 51.717 -6.0275 27 16 2 0 0 0 0.044011 1 36832 36832 63.563 40.827 1 22116000 3473 741 2376 2422 3918 3918 -0.042034377990376015 AVIEGAKF 8 Unmodified _AVIEGAKF_ 0 0 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.7401123046875 2 417.739628 833.464704 0.87599 0.00036594 0.063672 2.6598E-05 0.93966 0.00039253 417.7395108708126 43.888 0.32275 39.124 38.95 39.273 -4.7648 29 20 2 0 0 0 0.44629 1 26696 26696 39.957 3.9131 1 7630300 3474 9810 2377 2423 3919 3919 0.04131014840049829 AVIFSYSADLF 11 Unmodified _AVIFSYSADLF_ 0 0 0 REV__ENSG00000183706|ENST00000328795|OR4N4 REV__ENSG00000183706|ENST00000328795|OR4N4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5457458496094 3 411.544773 1231.61249 0.23684 9.7471E-05 1.2028 0.00049499 1.4396 0.00059246 411.54532061162047 63.266 0.31019 63.244 63.069 63.379 -0.021614 41 15 3 0 0 0 0.60863 1 34567 34567 10.899 0.099449 1 16329000 + 3475 23369 2378 2424 3920 3920 0.005948615833858639 AVIGSWCWTEE 11 Unmodified _AVIGSWCWTEE_ 0 0 0 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 ENSG00000196440|ENST00000423738|ARMCX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.5246276855469 3 427.525384 1279.55432 NaN NaN NaN NaN NaN NaN NaN 21.547 1 21.547 21.047 22.047 0 0 0 0 0.94293 1 10910 10910 0.40827 0.26837 1 3476 9818 2379 2425 3921 3921 -0.07427143333529784 AVIRHQQSLL 10 Unmodified _AVIRHQQSLL_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.9001770019531 3 388.899773 1163.67749 1.1615 0.00045172 0.73602 0.00028624 1.8976 0.00073796 388.89995685788324 42.046 0.31456 37.362 37.217 37.531 -4.6846 27 19 2 0 0 0 0.65282 1 25334 25334 4.7159 0.18705 1 12897000 3477 10127 2380 2426 3922 3922 0.10219900899915046 AVIVARTDPL 10 Unmodified _AVIVARTDPL_ 0 0 0 nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2907104492188 2 527.816399 1053.61824 0.28127 0.00014846 0.47027 0.00024821 0.75153 0.00039667 527.8167736278903 55.99 0.36652 50.069 49.861 50.227 -5.9211 41 21 3 0 0 0 0.23117 1 35558 35558 7.2892 2.96 1 20428000 3478 3027 2381 2427 3923 3923 0.09358004885712035 AVIVARTDPL 10 Unmodified _AVIVARTDPL_ 0 0 0 nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.816399 1053.61824 0.4309 0.00022744 -0.26987 -0.00014244 0.16103 8.4994E-05 527.8162911390557 50.322 0.28525 50.322 50.171 50.456 0 0.12668 -0.00039216 NaN 7.2892 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 8431200 3479 3027 2381 2427 0.09358004885712035 AVKDWEILLAF 11 Unmodified _AVKDWEILLAF_ 0 0 0 nc|ENSG00000189212|Q6NXN4|DPY19L2P1 nc|ENSG00000189212|Q6NXN4|DPY19L2P1 nc|ENSG00000189212|Q6NXN4|DPY19L2P1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.3703002929688 2 652.866089 1303.71762 1.2314 0.00080395 1.3688 0.00089367 2.6003 0.0016976 652.8670393623012 97.753 0.22774 91.578 91.459 91.687 -6.1757 49 15 4 0 0 0 0.48615 1 64734 64734 17.113 4.8722 1 162370000 3480 16470 2382 2428 3924 3924 0.07791402779798773 AVKEYLVNL 9 Unmodified _AVKEYLVNL_ 0 0 0 REV__nc|ENSG00000151572|Q32M45-3|ANO4 REV__nc|ENSG00000151572|Q32M45-3|ANO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8052368164062 2 524.8055 1047.59645 0.82963 0.0004354 -1.2179 -0.00063916 -0.38827 -0.00020377 524.8058554298898 67.333 0.59183 61.157 60.826 61.418 -6.1757 77 33 3 0 0 0 0.15471 1 43959 43959 27.629 2.6378 1 36370000 + 3481 21074 2383 2429 3925 3925 0.07455200137133033 AVKTLLLKMKR 11 Unmodified _AVKTLLLKMKR_ 0 0 0 nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1 nc|ENSG00000184305|Q9C0I3-2|CCSER1 nc|ENSG00000184305|Q9C0I3-2|CCSER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2881469726562 3 434.288092 1299.84245 NaN NaN NaN NaN NaN NaN NaN 106.23 1 106.18 105.68 106.68 -0.048103 0 0 0 0.94338 1 58887 58887 0.08335 0.010087 1 3482 9243 2384 2430 3926 3926 0.20451996715314635 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.5087280273438 1 872.50876 871.501483 0.17384 0.00015168 -0.12891 -0.00011248 0.04493 3.9202E-05 872.508590177731 58.918 0.37138 58.918 58.723 59.095 0 40 16 3 0 0 0 0.016494 2 32759 32759;32862 67.035 3.4725 1 12536000 3483 739 2385 2431 3927;3928 3927 0.060592666659431416 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7576293945312 2 436.758018 871.501483 0.25574 0.0001117 -0.14408 -6.293E-05 0.11165 4.8765E-05 436.7577025104961 58.906 0.27728 58.906 58.768 59.045 0 23 12 2 0 0 0 0.040472 1 32789 32789 49.669 9.2203 1 3314400 3484 739 2385 2431 3929 3929 0.060592666659431416 AVLAAVTEV 9 Unmodified _AVLAAVTEV_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.5070190429688 1 872.50876 871.501483 0.70405 0.00061429 -0.4045 -0.00035293 0.29955 0.00026136 872.5083269367733 67.105 0.41592 60.929 60.714 61.13 -6.1757 39 22 2 0 0 0 0.012158 2 43602 43602;43739 74.396 20.821 1 31674000 3485 739 2385 2431 3930;3931 3930 0.060592666659431416 AVLALPAAV 9 Unmodified _AVLALPAAV_ 0 0 0 ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 412.2628173828125 2 412.765646 823.516739 1.233 0.00050893 0.60421 0.0002494 1.8372 0.00075833 412.76618782505136 37.103 0.72366 32.819 32.267 32.991 -4.2835 50 44 2 0 0 0 0.14144 1 21620 21620 28.173 7.302 1 12866000 3486 3487 2386 2432 3932 3932 0.0979217825380374 AVLALPITL 9 Unmodified _AVLALPITL_ 0 0 0 REV__ENSG00000125815|ENST00000246012|CST8 REV__ENSG00000125815|ENST00000246012|CST8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.5985717773438 1 910.597181 909.589904 0.41962 0.0003821 0.64993 0.00059182 1.0695 0.00097393 910.5976377076375 101.63 0.10976 95.451 95.373 95.483 -6.1757 10 5 2 0 0 0 0.0089973 1 68195 68195 86.121 0 1 10104000 + 3487 19515 2387 2433 3933 3933 0.13149306976424668 AVLIEDVP 8 Unmodified _AVLIEDVP_ 0 0 0 nc|ENSG00000219200|Q6P5S7-2|RNASEK;ENST00000575822.1_17:6916945-6917062:+|nuORF;ENST00000552176.2_17:6916945-6917602:+|nuORF;ENSG00000219200|ENST00000593646|RNASEK;nc|ENSG00000219200|Q6P5S7|RNASEK nc|ENSG00000219200|Q6P5S7-2|RNASEK nc|ENSG00000219200|Q6P5S7-2|RNASEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2453918457031 2 428.244744 854.474934 1.231 0.00052716 -0.045183 -1.9349E-05 1.1858 0.00050782 428.24483374581064 101.23 0.08844 95.054 95.018 95.107 -6.1757 9 5 2 0 0 0 0.21786 1 67897 67897 67.035 0 1 15459000 3488 16548 2388 2434 3934 3934 0.041875777746213316 AVLLPASW 8 Unmodified _AVLLPASW_ 0 0 0 DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7507019042969 2 428.749996 855.485439 1.547 0.00066326 -0.36353 -0.00015586 1.1834 0.00050739 428.7499185505836 101.02 0.1598 94.845 94.78 94.939 -6.1757 17 8 3 0 0 0 0.55032 1 67699 67699 30.225 5.5509 1 98738000 3489 227 2389 2435 3935 3935 0.051916052197157114 AVLLPASW 8 Unmodified _AVLLPASW_ 0 0 0 DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant DCAF4L1|p.R163W|1|0.07|ENSG00000182308|chr4:41982279-41982279|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 856.4956665039062 1 856.492716 855.485439 1.2523 0.0010725 0.48607 0.00041631 1.7383 0.0014889 856.4931221177493 101.02 0.10891 94.839 94.78 94.889 -6.1757 8 5 2 0 0 0 0.16583 1 67718 67718 82.939 15.526 1 15025000 3490 227 2389 2435 3936 3936 0.051916052197157114 AVLPRSHR 8 Unmodified _AVLPRSHR_ 0 0 0 nc|ENSG00000291071|Q05BU3|FAM86JP;ENST00000484945.5_1_3:75475665-75476639:-|nuORF;ENST00000309608.6_1_8:12285230-12291581:-|nuORF;ENST00000515245.5_1_3:129821671-129830240:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1;ENST00000510506.5_1_4:3948559-3952929:-|nuORF nc|ENSG00000291071|Q05BU3|FAM86JP nc|ENSG00000291071|Q05BU3|FAM86JP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2808837890625 2 468.280318 934.546083 -0.018388 -8.611E-06 0.41039 0.00019218 0.392 0.00018357 468.28062464484344 34.887 0.24435 34.915 34.774 35.018 0.027401 24 10 3 0 0 0 0.77186 1 18385 18385 10.824 3.5347 1 4479500 3491 16641 2390 2436 3937 3937 0.07619135322659076 AVLQECHNTF 10 Unmodified _AVLQECHNTF_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MSMS AL20221201_MKP_PDAC_01 4 387.8504943847656 3 387.850091 1160.52844 NaN NaN NaN NaN NaN NaN NaN 17.173 1 14.587 14.087 15.087 -2.5866 0 0 0 0.96627 1 8957 8957 2.086 0 1 3492 315 2391 2437 3938 3938 -0.04539992785180402 AVLQVGLEA 9 Unmodified _AVLQVGLEA_ 0 0 0 REV__nc|ENSG00000139364|Q14DG7|TMEM132B REV__nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2626037597656 2 450.263468 898.512382 0.034546 1.5555E-05 -0.89414 -0.0004026 -0.8596 -0.00038704 450.2628883672637 52.07 0.46815 52.07 51.908 52.376 0 48 20 4 0 0 0 0.078417 1 28862 28862 38.151 0 1 24288000 + 3493 20407 2392 2438 3939 3939 0.05906669040234647 AVLVGPPS 8 Unmodified _AVLVGPPS_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3;chr17:82237893-82238811|64|17.39|0.76|4.51|+|2|SLC16A3,SLC16A3|1 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MSMS AL20221201_MKP_PDAC_01 4 370.2212524414062 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 78.529 1 72.354 71.854 72.854 -6.1757 0 0 0 0.77249 1 51405 51405 24.674 3.8027 1 3494 5345 2393 2439 3940 3940 0.047913432942777945 AVLYLRSAI 9 Unmodified _AVLYLRSAI_ 0 0 0 REV__ENSG00000244694|ENST00000339488|PTCHD4 REV__ENSG00000244694|ENST00000339488|PTCHD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.3058776855469 2 503.30821 1004.60187 NaN NaN NaN NaN NaN NaN NaN 62.568 1 62.081 61.581 62.581 -0.48764 0 0 0 0.6032 1 34098 34098 12.532 4.6214 1 + 3495 24485 2394 2440 3941 3941 0.09974923719619255 AVMEQIPEI 9 Oxidation (M) _AVM(Oxidation (M))EQIPEI_ AVM(1)EQIPEI AVM(55)EQIPEI 0 0 1 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2657470703125 2 523.26535 1044.51615 0.5608 0.00029345 -0.60023 -0.00031408 -0.039437 -2.0636E-05 523.2652397447883 56.899 0.65874 56.899 56.518 57.177 0 76 28 4 0 0 0 0.031062 2 31562 31562;31666 54.774 27.89 1 29193000 3496 3800 2395 2441 3942;3943 3942 668 -0.004330292482336517 AVMEQIPEI 9 Oxidation (M) _AVM(Oxidation (M))EQIPEI_ AVM(1)EQIPEI AVM(55)EQIPEI 0 0 1 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.26611328125 2 523.26535 1044.51615 1.366 0.00071477 0.1017 5.3217E-05 1.4677 0.00076799 523.2658264581073 64.542 0.58419 58.367 58.15 58.734 -6.1757 54 32 2 0 0 0 0.031062 1 41764 41764 54.774 24.137 1 21171000 3497 3800 2395 2441 3944 3944 668 -0.004330292482336517 AVMEQIPEI 9 Unmodified _AVMEQIPEI_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2675170898438 2 515.267893 1028.52123 0.40873 0.00021061 -1.1388 -0.0005868 -0.73009 -0.00037619 515.2673278336774 67.819 0.31362 67.819 67.621 67.934 0 23 14 2 0 0 0 0.047196 1 37778 37778 46.021 22.873 1 1884600 3498 3800 2395 2442 3945 3945 0.008112746143979166 AVMEQIPEI 9 Unmodified _AVMEQIPEI_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2669067382812 2 515.267893 1028.52123 0.77949 0.00040165 0.035019 1.8044E-05 0.81451 0.00041969 515.267703782691 75.319 0.62752 69.143 68.801 69.429 -6.1757 75 34 3 0 0 0 0.011968 3 49136 49136;49263;49405 74.929 36.753 1 29627000 3499 3800 2395 2442 3946;3947;3948 3946 0.008112746143979166 AVMEQIPEI 9 Unmodified _AVMEQIPEI_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5;ENST00000455854.2_1_6:43491608-43492751:-|nuORF ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 515.267893 1028.52123 0.5317 0.00027397 -2.8399 -0.0014633 -2.3082 -0.0011893 515.2662437389706 68.121 0.13008 67.638 67.594 67.724 -0.48218 -0.090452 -0.0013196 NaN 46.021 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1724800 3500 3800 2395 2442 0.008112746143979166 AVMLHSFTL 9 Oxidation (M) _AVM(Oxidation (M))LHSFTL_ AVM(1)LHSFTL AVM(130)LHSFTL 0 0 1 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.770263671875 2 517.770603 1033.52665 0.37063 0.0001919 -0.47091 -0.00024382 -0.10028 -5.1924E-05 517.7702119191682 60.093 0.26183 60.04 59.856 60.118 -0.053059 21 13 2 0 0 0 0.0025195 1 32746 32746 129.2 58.067 1 7862400 3501 2703 2396 2443 3949 3949 467 0.011229981968881475 AVMRRKFML 9 Unmodified _AVMRRKFML_ 0 0 0 nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11 nc|ENSG00000179873|P59045-2|NLRP11 nc|ENSG00000179873|P59045-2|NLRP11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.7720336914062 3 384.556185 1150.64672 0.35407 0.00013616 -1.3344 -0.00051314 -0.98029 -0.00037698 384.5557068144203 25.858 0.26633 22.907 22.754 23.02 -2.9511 29 17 2 0 0 0 0.21806 1 14244 14244 2.7352 0.64919 1 13471000 3502 8861 2397 2444 3950 3950 0.07742707989655173 AVNALQSVY 9 Unmodified _AVNALQSVY_ 0 0 0 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.5094604492188 1 964.509822 963.502546 0.12 0.00011574 0.52008 0.00050162 0.64008 0.00061736 964.5104520136645 37.752 0.28076 37.752 37.625 37.905 0 28 13 3 0 0 0 0.1773 1 20096 20096 25.399 0 1 5454100 3503 7287 2398 2445 3951 3951 0.019334810348595965 AVNALQSVY 9 Unmodified _AVNALQSVY_ 0 0 0 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7578430175781 2 482.758549 963.502546 0.2266 0.00010939 0.31944 0.00015421 0.54604 0.00026361 482.7586410265834 37.775 0.34262 37.775 37.604 37.947 0 46 16 4 0 0 0 0.12424 1 20192 20192 30.637 13.694 1 21983000 3504 7287 2398 2445 3952 3952 0.019334810348595965 AVNALQSVY 9 Unmodified _AVNALQSVY_ 0 0 0 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7584838867188 2 482.758549 963.502546 0.13976 6.7469E-05 0.20885 0.00010082 0.34861 0.00016829 482.75852941147105 38.098 0.24636 37.826 37.699 37.946 -0.27133 18 11 2 0 0 0 0.1773 1 20054 20054 25.399 8.457 1 2589000 3505 7287 2398 2445 3953 3953 0.019334810348595965 AVNALQSVY 9 Unmodified _AVNALQSVY_ 0 0 0 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7586669921875 2 482.758549 963.502546 0.6972 0.00033658 -0.93401 -0.0004509 -0.23681 -0.00011432 482.7584216499954 44.518 0.45234 39.666 39.452 39.905 -4.852 67 36 3 0 0 0 0.1773 1 27222 27222 25.399 3.6527 1 64989000 3506 7287 2398 2445 3954 3954 0.019334810348595965 AVNGESELR 9 Unmodified _AVNGESELR_ 0 0 0 REV__ENSG00000175213|ENST00000311764|ZNF408 REV__ENSG00000175213|ENST00000311764|ZNF408 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.250732421875 2 487.748713 973.482873 -0.41804 -0.0002039 0.69893 0.0003409 0.28089 0.000137 487.74902977931674 17.305 0.42853 17.305 17.034 17.462 0 172 89 2 0 0 0 0.47846 1 8376 8376 8.7454 0.15213 1 1412800 + 3507 22851 2399 2446 3955 3955 -0.004928949759005263 AVNPDHYTPYK 11 Unmodified _AVNPDHYTPYK_ 0 0 0 ENSG00000144647|ENST00000344697|POMGNT2 ENSG00000144647|ENST00000344697|POMGNT2 ENSG00000144647|ENST00000344697|POMGNT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.8165893554688 2 652.817127 1303.6197 NaN NaN NaN NaN NaN NaN NaN 54.44 1 53.974 53.474 54.474 -0.46664 0 0 0 0.86932 1 29500 29500 8.7454 1.1365 1 3508 5626 2400 2447 3956 3956 -0.019964058162031506 AVNPIIYNL 9 Unmodified _AVNPIIYNL_ 0 0 0 ENSG00000132911|ENST00000255262|NMUR2 ENSG00000132911|ENST00000255262|NMUR2 ENSG00000132911|ENST00000255262|NMUR2 MSMS AL20221201_MKP_PDAC_01 4 508.7925720214844 2 508.792392 1015.57023 NaN NaN NaN NaN NaN NaN NaN 75.131 1 68.955 68.455 69.455 -6.1757 0 0 0 0.096036 1 49128 49128 44.407 6.2558 1 3509 4463 2401 2448 3957 3957 0.06306930965661195 AVNRPHHLGL 10 Unmodified _AVNRPHHLGL_ 0 0 0 REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8803405761719 3 371.880713 1112.62031 1.6958 0.00063063 0.60061 0.00022336 2.2964 0.00085399 371.8807754884956 20.169 0.42725 17.513 17.333 17.76 -2.6564 95 28 4 0 0 0 0.42068 2 10711 10711;10820 13.615 2.7159 1 42937000 + 3510 28015 2402 2449 3958;3959 3958 0.06850478414162353 AVNRPHHLGL 10 Unmodified _AVNRPHHLGL_ 0 0 0 REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF REV__ENST00000501855.6_1_5:180257966-180258903:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.1945190429688 3 371.880713 1112.62031 1.6958 0.00063063 0.60061 0.00022336 2.2964 0.00085399 371.8807754884956 20.169 0.42725 17.513 17.333 17.76 -2.6564 95 28 4 0 0 0 0.23675 1 10655 10655 7.1017 5.4491 1 42937000 + 3511 28015 2402 2449 3960 3960 0.06850478414162353 AVNVWTHLL 9 Unmodified _AVNVWTHLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.763916015625 2 526.798009 1051.58147 -0.32669 -0.0001721 -3.9452 -0.0020783 -4.2719 -0.0022504 526.7960082552917 27.619 0.14977 27.619 27.53 27.679 0 9 6 2 0 0 0 0.5029 1 14203 14203 7.2892 1.5288 1 780310 3512 9082 2403 2450 3961 3961 0.05773753059816045 AVPGPGGVH 9 Unmodified _AVPGPGGVH_ 0 0 0 REV__ENST00000509632.5_1_5:218448-220362:+|nuORF REV__ENST00000509632.5_1_5:218448-220362:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.7146606445312 2 395.713945 789.413337 0.84336 0.00033373 -0.60941 -0.00024115 0.23395 9.2577E-05 395.7138440626144 49.969 0.24188 49.577 49.49 49.732 -0.3923 18 11 2 0 0 0 0.3554 1 26891 26891 14.582 5.9884 1 2764500 + 3513 28052 2404 2451 3962 3962 0.010206908659938563 AVPPIKIKVS 10 Unmodified _AVPPIKIKVS_ 0 0 0 REV__ENSG00000163755|ENST00000296051|HPS3 REV__ENSG00000163755|ENST00000296051|HPS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.23779296875 3 351.233982 1050.68012 NaN NaN NaN NaN NaN NaN NaN 103.62 1 103.58 103.08 104.08 -0.047928 0 0 0 1.0004 1 57548 57548 0.62683 0.35781 1 + 3514 21812 2405 2452 3963 3963 0.15680356304824272 AVPQGSIAY 9 Unmodified _AVPQGSIAY_ 0 0 0 REV__ENSG00000198218|ENST00000395443|QRICH1 REV__ENSG00000198218|ENST00000395443|QRICH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.240234375 2 453.239993 904.465432 0.87642 0.00039723 1.3185 0.00059761 2.195 0.00099484 453.2408706673226 45.764 0.49483 40.809 40.504 40.999 -4.9549 77 32 3 0 0 0 0.07916 1 27985 27985 37.974 3.5723 1 48288000 + 3515 24004 2406 2453 3964 3964 0.009378094890735156 AVPQPNGLAVW 11 Unmodified _AVPQPNGLAVW_ 0 0 0 REV__ENST00000375153.7_1_1:19638904-19639291:+|nuORF REV__ENST00000375153.7_1_1:19638904-19639291:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3123779296875 2 576.314023 1150.61349 0.26782 0.00015435 -2.8022 -0.0016149 -2.5343 -0.0014606 576.3124496658311 28.995 0.15868 29.025 28.943 29.102 0.030106 11 6 2 0 0 0 0.69155 1 15109 15109 10.074 4.3421 1 1593000 + 3516 26197 2407 2454 3965 3965 0.04421120742927087 AVPRASPTL 9 Unmodified _AVPRASPTL_ 0 0 0 REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF REV__ENST00000481187.5_1_9:139887192-139887402:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2686157226562 2 456.269084 910.523616 NaN NaN NaN NaN NaN NaN NaN 38.702 1 38.415 37.915 38.915 -0.28687 0 0 0 0.14 1 20385 20385 37.974 0 1 + 3517 27687 2408 2455 3966 3966 0.06477491134376123 AVQAQREI 8 Unmodified _AVQAQREI_ 0 0 0 REV__nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 REV__nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7564697265625 2 457.756341 913.498129 -0.039568 -1.8112E-05 0.35542 0.0001627 0.31586 0.00014459 457.7565620079365 25.914 0.43382 25.914 25.613 26.047 0 26 20 2 0 0 0 0.6895 1 13198 13198 18.135 2.2878 1 1459700 + 3518 20984 2409 2456 3967 3967 0.03792016611953386 AVQDADLLV 9 Unmodified _AVQDADLLV_ 0 0 0 ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.258056640625 2 472.258382 942.502212 0.50803 0.00023992 0.022718 1.0729E-05 0.53075 0.00025065 472.25832782621126 66.967 0.2906 66.967 66.795 67.085 0 29 13 3 0 0 0 0.30562 1 37306 37306 16.942 3.4344 1 3023100 3519 6204 2410 2457 3968 3968 0.02866061315000934 AVQHECDTHSE 11 Unmodified _AVQHECDTHSE_ 0 0 0 REV__ENSG00000196391|ENST00000354377|ZNF774 REV__ENSG00000196391|ENST00000354377|ZNF774 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2518310546875 2 628.254034 1254.49351 -0.27927 -0.00017545 -1.4427 -0.0009064 -1.722 -0.0010819 628.2523228065812 40.88 0.43543 40.88 40.701 41.137 0 80 40 2 0 0 0 0.59689 1 22054 22054 11.495 3.3392 1 26399000 + 3520 23825 2411 2458 3969 3969 -0.12355280383781064 AVQIQTQV 8 Unmodified _AVQIQTQV_ 0 0 0 REV__nc|ENSG00000183495|Q96L91-4|EP400 REV__nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7530822753906 2 443.753267 885.491981 1.7658 0.00078356 -0.14937 -6.6281E-05 1.6164 0.00071728 443.75209855703116 50.186 0.16375 50.137 50.066 50.23 -0.048824 12 7 2 0 0 0 0.77907 1 27157 27157 10.183 0 1 978650 + 3521 23352 2412 2459 3970 3970 0.044654983804207404 AVQPREFY 8 Unmodified _AVQPREFY_ 0 0 0 REV__nc|ENSG00000160305|Q14689-6|DIP2A REV__nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2444152832031 2 505.258717 1008.50288 1.178 0.00059518 -2.0042 -0.0010126 -0.8262 -0.00041744 505.25749387960576 54.438 0.42418 54.438 54.291 54.715 0 41 18 3 0 0 0 0.77907 1 30152 30152 10.183 0.80027 1 1872200 + 3522 21535 2413 2460 3971 3971 -0.0010309924529110503 AVQTEREEQP 10 Unmodified _AVQTEREEQP_ 0 0 0 REV__ENST00000591098.1_1_18:43684359-43698283:+|nuORF REV__ENST00000591098.1_1_18:43684359-43698283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2852783203125 2 593.788566 1185.56258 -0.3905 -0.00023187 -4.2247 -0.0025086 -4.6152 -0.0027405 594.2870886121125 40.844 0.1518 40.844 40.72 40.872 0 38 18 3 0 0 0 0.40136 1 21968 21968 21.537 1.0834 1 19302000 + 3523 21110 2414 2461 3972 3972 -0.022778730925892887 AVREQYGIQR 10 Unmodified _AVREQYGIQR_ 0 0 0 nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5 nc|ENSG00000168959|P41594-3|GRM5 nc|ENSG00000168959|P41594-3|GRM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.2240905761719 3 407.222916 1218.64692 NaN NaN NaN NaN NaN NaN NaN 29.084 1 29.022 28.522 29.522 -0.062159 0 0 0 0.94014 1 15034 15034 3.3196 0 1 3524 7821 2415 2462 3973 3973 0.04634122514835326 AVRIPGGPA 9 Unmodified _AVRIPGGPA_ 0 0 0 ENSG00000140564|ENST00000268171|FURIN ENSG00000140564|ENST00000268171|FURIN ENSG00000140564|ENST00000268171|FURIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2510375976562 2 419.250695 836.486836 -0.25029 -0.00010493 1.4101 0.00059117 1.1598 0.00048624 419.251312703909 33.222 0.33625 33.063 32.86 33.196 -0.15918 24 13 3 0 0 0 0.042911 1 17343 17343 48.346 6.2513 1 3605000 3525 5255 2416 2463 3974 3974 0.0620523930847412 AVRIPGGPA 9 Unmodified _AVRIPGGPA_ 0 0 0 ENSG00000140564|ENST00000268171|FURIN ENSG00000140564|ENST00000268171|FURIN ENSG00000140564|ENST00000268171|FURIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2509155273438 2 419.250695 836.486836 1.5389 0.00064516 -0.10641 -4.4612E-05 1.4324 0.00060055 419.2506562642162 37.465 0.38239 33.181 32.955 33.338 -4.2835 48 22 3 0 0 0 0.016184 1 21918 21918 67.344 6.9543 1 28917000 3526 5255 2416 2463 3975 3975 0.0620523930847412 AVRKPAISL 9 Unmodified _AVRKPAISL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8074645996094 2 477.808377 953.6022 0.032293 1.543E-05 0.59881 0.00028612 0.6311 0.00030155 477.80862556719904 33.331 0.20858 33.36 33.253 33.461 0.028931 13 8 2 0 0 0 0.095405 1 17546 17546 34.102 15.967 1 2066000 3527 5461 2417 2464 3976 3976 0.12354343439471904 AVRKPAISL 9 Unmodified _AVRKPAISL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.8089904785156 2 477.808377 953.6022 1.1669 0.00055755 -0.32595 -0.00015574 0.84094 0.00040181 477.8082568949486 36.976 0.36688 32.693 32.524 32.891 -4.2835 47 22 3 0 0 0 0.010611 1 21606 21606 78.728 16.155 1 15048000 3528 5461 2417 2464 3977 3977 0.12354343439471904 AVRLANRKTY 10 Unmodified _AVRLANRKTY_ 0 0 0 REV__ENSG00000185274|ENST00000333538|GALNT17 REV__ENSG00000185274|ENST00000333538|GALNT17 MSMS AL20221201_MKP_PDAC_01 4 596.3492431640625 2 596.351471 1190.68839 NaN NaN NaN NaN NaN NaN NaN 46.439 1 41.359 40.859 41.859 -5.0805 0 0 0 0.72101 1 28681 28681 13.042 2.2185 1 + 3529 23490 2418 2465 3978 3978 0.10067303274172446 AVRLITSSL 9 Unmodified _AVRLITSSL_ 0 0 0 ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX ENST00000558958.1_1_15:65449172-65477491:-|nuORF ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2951354980469 2 480.297842 958.581131 0.52327 0.00025133 -2.4381 -0.001171 -1.9148 -0.00091968 480.2964704503611 52.156 0.29303 52.097 51.917 52.21 -0.058918 30 13 3 0 0 0 0.011671 1 28231 28231 75.761 25.828 1 3632500 3530 7540 2419 2466 3979 3979 0.10018333339962737 AVRNQHLLL 9 Unmodified _AVRNQHLLL_ 0 0 0 REV__ENSG00000040608|ENST00000043402|RTN4R REV__ENSG00000040608|ENST00000043402|RTN4R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3220825195312 2 532.322183 1062.62981 -0.20942 -0.00011148 0.47254 0.00025154 0.26312 0.00014007 532.3226189084357 51.324 0.23357 51.27 51.127 51.361 -0.053871 19 11 2 0 0 0 0.10925 1 27761 27761 32.117 3.6301 1 2890500 + 3531 17195 2420 2467 3980 3980 0.101002466996988 AVRQEYVEL 9 Unmodified _AVRQEYVEL_ 0 0 0 nc|ENSG00000164172|O96033|MOCS2 nc|ENSG00000164172|O96033|MOCS2 nc|ENSG00000164172|O96033|MOCS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7967529296875 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 63.962 1 63.477 62.977 63.977 -0.48512 0 0 0 0.41346 1 34892 34892 19.257 5.3509 1 3532 16333 2421 2468 3981 3981 0.028208241263882883 AVRTKMVY 8 Oxidation (M) _AVRTKM(Oxidation (M))VY_ AVRTKM(1)VY AVRTKM(50)VY 0 0 1 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2698974609375 2 492.27077 982.526987 1.1662 0.0005741 -2.377 -0.0011701 -1.2107 -0.00059601 492.2699355793648 20.985 0.36123 18.292 18.11 18.471 -2.693 41 20 3 0 0 0 0.34916 1 11201 11201 49.933 29.479 1 3025400 3533 5983 2422 2469 3982 3982 1067 0.03502417916729428 AVSALHLR 8 Unmodified _AVSALHLR_ 0 0 0 ENST00000530105.1_1_11:57156392-57157417:-|nuORF;nc|ENSG00000186652|P13727-2|PRG2;ENSG00000186652|ENST00000311862|PRG2 ENST00000530105.1_1_11:57156392-57157417:-|nuORF ENST00000530105.1_1_11:57156392-57157417:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7635192871094 2 433.763969 865.513385 0.094944 4.1183E-05 0.10983 4.7642E-05 0.20478 8.8825E-05 433.7640555185764 25.239 0.30277 22.356 22.228 22.531 -2.8831 44 22 3 0 0 0 0.14054 1 13759 13759 88.904 14.481 1 10756000 3534 9494 2423 2470 3983 3983 0.07524928199802616 AVSALHLR 8 Unmodified _AVSALHLR_ 0 0 0 ENST00000530105.1_1_11:57156392-57157417:-|nuORF;nc|ENSG00000186652|P13727-2|PRG2;ENSG00000186652|ENST00000311862|PRG2 ENST00000530105.1_1_11:57156392-57157417:-|nuORF ENST00000530105.1_1_11:57156392-57157417:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 433.763969 865.513385 -0.22393 -9.7135E-05 1.1315 0.0004908 0.90755 0.00039366 433.76461293387683 22.549 0.16755 22.549 22.423 22.59 0 0.096544 0.00068275 NaN 88.904 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 710920 3535 9494 2423 2470 0.07524928199802616 AVSAPFDP 8 Unmodified _AVSAPFDP_ 0 0 0 REV__BAHCC1|p.G851D|1|0.25|ENSG00000266074|chr17:81444707-81444707|G/A|missense_variant REV__BAHCC1|p.G851D|1|0.25|ENSG00000266074|chr17:81444707-81444707|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.392578125 1 803.393396 802.386119 0.31978 0.00025691 0.30363 0.00024393 0.62341 0.00050084 803.3935763203539 73.885 0.34067 73.409 73.252 73.593 -0.47588 39 16 3 0 0 0 0.21786 1 40395 40395 67.035 20.114 1 5353400 + 3536 16743 2424 2471 3984 3984 -0.02297837465050634 AVSAPFDP 8 Unmodified _AVSAPFDP_ 0 0 0 REV__BAHCC1|p.G851D|1|0.25|ENSG00000266074|chr17:81444707-81444707|G/A|missense_variant REV__BAHCC1|p.G851D|1|0.25|ENSG00000266074|chr17:81444707-81444707|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.3935546875 1 803.393396 802.386119 1.4149 0.0011367 -0.53518 -0.00042996 0.87974 0.00070678 803.3929401087541 81.274 0.48373 75.099 74.877 75.361 -6.1757 44 27 2 0 0 0 0.24071 3 53239 53239;53371;53493 63.563 23.114 1 27100000 + 3537 16743 2424 2471 3985;3986;3987 3985 -0.02297837465050634 AVSASGSTSSQ 11 Unmodified _AVSASGSTSSQ_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2280578613281 2 491.22781 980.441068 0.18411 9.0438E-05 0.42884 0.00021066 0.61295 0.0003011 491.22798331734435 88.251 0.26604 88.251 88.092 88.358 0 14 12 2 0 0 0 0.73115 1 48861 48861 1.3295 0.5359 1 231370 3538 712 2425 2472 3988 3988 -0.049934954550963084 AVSAVVHEY 9 Unmodified _AVSAVVHEY_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7511596679688 2 487.750724 973.486896 0.32591 0.00015896 -0.28254 -0.00013781 0.043364 2.1151E-05 487.7506437192864 31.406 0.3272 31.406 31.234 31.561 0 52 15 5 0 0 0 0.012148 2 16318 16318;16421 74.423 38.379 1 23967000 3539 790 2426 2473 3989;3990 3989 -0.0009080548219344564 AVSAVVHEY 9 Unmodified _AVSAVVHEY_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7521057128906 2 487.750724 973.486896 1.1922 0.00058148 0.70413 0.00034344 1.8963 0.00092492 487.75113881963466 35.78 0.48561 31.588 31.351 31.837 -4.1928 88 30 4 0 0 0 0.031062 3 20852 20714;20852;20977 54.774 16.8 1 89328000 3540 790 2426 2473 3991;3992;3993 3992 -0.0009080548219344564 AVSHQVRNSAL 11 Unmodified _AVSHQVRNSAL_ 0 0 0 REV__nc|ENSG00000196503|Q6T311|ARL9 REV__nc|ENSG00000196503|Q6T311|ARL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5510864257812 3 394.551033 1180.63127 1.0543 0.00041596 -0.30617 -0.0001208 0.74808 0.00029516 394.5509242850227 18.907 0.40953 16.286 16.097 16.506 -2.6215 92 26 5 0 0 0 0.63534 1 9893 9893 7.846 3.1301 1 77732000 + 3541 29882 2427 2474 3994 3994 0.048178359978237495 AVSHYPNV 8 Unmodified _AVSHYPNV_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2372741699219 2 443.72451 885.434466 -0.19763 -8.7692E-05 -2.9235 -0.0012972 -3.1211 -0.0013849 443.7227555732065 41.565 0.32924 41.565 41.422 41.751 0 33 16 3 0 0 0 8.7369 1 22432 22432 26.341 12.833 1 8145700 + 3542 24526 2428 2475 3995 3995 -0.012833438251504958 AVSLKFRA 8 Unmodified _AVSLKFRA_ 0 0 0 REV__ENST00000359947.8_1_1:44087734-44088001:+|nuORF REV__ENST00000359947.8_1_1:44087734-44088001:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 446.2744445800781 2 446.27417 890.533787 0.84708 0.00037803 -0.081271 -3.6269E-05 0.76581 0.00034176 446.27407961099095 43.131 0.2103 38.366 38.18 38.39 -4.7648 23 13 2 0 0 0 8.7369 1 26167 26167 2.3027 1.5091 1 13439000 + 3543 25903 2429 2476 3996 3996 0.08414098859600472 AVSMSIPGQES 11 Unmodified _AVSMSIPGQES_ 0 0 0 ENST00000514142.5_1_4:186435019-186435130:-|nuORF ENST00000514142.5_1_4:186435019-186435130:-|nuORF ENST00000514142.5_1_4:186435019-186435130:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2650146484375 2 553.263339 1104.51212 NaN NaN NaN NaN NaN NaN NaN 74.147 1 74.191 73.691 74.691 0.043983 0 0 0 0.69464 1 40869 40869 17.113 4.0704 1 3544 14648 2430 2477 3997 3997 -0.03595118741918668 AVSRYYFGCC 10 Unmodified _AVSRYYFGCC_ 0 0 0 nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP nc|ENSG00000197429|Q9Y573-2|IPP nc|ENSG00000197429|Q9Y573-2|IPP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7496948242188 2 584.749344 1167.48414 -0.76113 -0.00044507 0.60199 0.00035201 -0.15915 -9.306E-05 584.7492881885619 30.294 0.16138 30.294 30.201 30.363 0 16 7 3 0 0 0 0.23991 1 15764 15764 1.4819 0.15237 1 1190500 3545 9953 2431 2478 3998 3998 -0.09290720202989178 AVSSRGPALE 10 Unmodified _AVSSRGPALE_ 0 0 0 REV__ENST00000534188.1_1_11:6423796-6426005:-|nuORF REV__ENST00000534188.1_1_11:6423796-6426005:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7624816894531 2 493.766906 985.519259 0.35343 0.00017451 -0.56922 -0.00028106 -0.21579 -0.00010655 493.76596022057714 69.093 0.41086 68.613 68.309 68.719 -0.48071 34 17 3 0 0 0 0.56348 1 37721 37721 13.042 1.4022 1 2707500 + 3546 16725 2432 2479 3999 3999 0.02591981920818398 AVSTDVTCQEL 11 Unmodified _AVSTDVTCQEL_ 0 0 0 REV__ENSG00000131966|ENST00000254286|ACTR10 REV__ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.772216796875 2 583.273903 1164.53325 0.20411 0.00011905 0.51134 0.00029825 0.71545 0.0004173 583.2741263731853 58.607 0.28882 58.116 57.963 58.252 -0.49079 36 13 3 0 0 0 0.65108 1 31838 31838 8.7454 2.0222 1 8290600 + 3547 19822 2433 2480 4000 4000 -0.04243153433048974 AVSTDVTCQEL 11 Unmodified _AVSTDVTCQEL_ 0 0 0 REV__ENSG00000131966|ENST00000254286|ACTR10 REV__ENSG00000131966|ENST00000254286|ACTR10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.772216796875 2 583.273903 1164.53325 0.20411 0.00011905 0.51134 0.00029825 0.71545 0.0004173 583.2741263731853 58.607 0.28882 58.116 57.963 58.252 -0.49079 36 13 3 0 0 0 0.28953 1 31838 31838 8.7454 2.5396 1 8290600 + 3548 19822 2433 2480 4001 4001 -0.04243153433048974 AVSYHFDAQN 10 Unmodified _AVSYHFDAQN_ 0 0 0 REV__ENSG00000175065|ENST00000308128|DSG4 REV__ENSG00000175065|ENST00000308128|DSG4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.259765625 2 576.259445 1150.50434 NaN NaN NaN NaN NaN NaN NaN 24.196 1 24.196 23.696 24.696 0 0 0 0 0.85122 1 12356 12356 10.074 0 1 + 3549 22835 2434 2481 4002 4002 -0.06489509947186889 AVTASIHVY 9 Unmodified _AVTASIHVY_ 0 0 0 ENSG00000077514|ENST00000263681|POLD3;nc|ENSG00000077514|Q15054-2|POLD3 ENSG00000077514|ENST00000263681|POLD3 ENSG00000077514|ENST00000263681|POLD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7618408203125 2 480.761092 959.507631 0.58938 0.00028335 -1.3423 -0.0006453 -0.75287 -0.00036195 480.76057530290655 46.367 0.21651 41.286 41.143 41.359 -5.0805 26 14 3 0 0 0 0.019979 1 28639 28639 63.563 6.0915 1 13876000 3550 1220 2435 2482 4003 4003 0.026257848974637454 AVTCYGIVHI 10 Unmodified _AVTCYGIVHI_ 0 0 0 ENSG00000169446|ENST00000305963|MMGT1;nc|ENSG00000169446|Q8N4V1-2|MMGT1 ENSG00000169446|ENST00000305963|MMGT1 ENSG00000169446|ENST00000305963|MMGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1907653808594 3 359.191677 1074.5532 2.4747 0.00088888 -2.0177 -0.00072472 0.457 0.00016415 359.19073945922923 41.783 0.20338 37.175 37.047 37.25 -4.6079 19 12 2 0 0 0 0.48834 1 25146 25146 10.151 0 1 8103900 3551 7876 2436 2483 4004 4004 0.018906870881892246 AVTERPLNS 9 Unmodified _AVTERPLNS_ 0 0 0 REV__ENSG00000184619|ENST00000396267|KRBA2 REV__ENSG00000184619|ENST00000396267|KRBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7679138183594 2 493.766906 985.519259 0.35343 0.00017451 -0.56922 -0.00028106 -0.21579 -0.00010655 493.76596022057714 69.093 0.41086 68.613 68.309 68.719 -0.48071 34 17 3 0 0 0 0.19127 1 37761 37761 24.021 0 1 2707500 + 3552 23431 2437 2484 4005 4005 0.02591981920818398 AVTGILVQL 9 Unmodified _AVTGILVQL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 913.5769653320312 1 913.571694 912.564418 0.0046673 4.2639E-06 2.8806 0.0026316 2.8853 0.0026359 913.5743811418695 98.268 0.18994 98.075 97.969 98.158 -0.19321 10 6 2 0 0 0 0.095405 1 53659 53659 34.102 5.6156 1 649780 3553 7130 2438 2485 4006 4006 0.10463832454001931 AVTGILVQL 9 Unmodified _AVTGILVQL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 913.5718994140625 1 913.571694 912.564418 1.147 0.0010478 -0.023079 -2.1084E-05 1.1239 0.0010268 913.5715778451571 100.93 0.14339 94.759 94.688 94.831 -6.1757 25 8 4 0 0 0 0.0055767 1 67595 67595 115.69 7.695 1 369180000 3554 7130 2438 2485 4007 4007 0.10463832454001931 AVTGLHLR 8 Unmodified _AVTGLHLR_ 0 0 0 REV__ATP9A|p.Q698Pfs*24|1|0.06|ENSG00000054793|chr20:51622089-51622096|GATGTCTT/-|frameshift_variant REV__ATP9A|p.Q698Pfs*24|1|0.06|ENSG00000054793|chr20:51622089-51622096|GATGTCTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7649841308594 2 433.763969 865.513385 -0.22393 -9.7135E-05 1.1315 0.0004908 0.90755 0.00039366 433.76461293387683 22.549 0.16755 22.549 22.423 22.59 0 11 7 2 0 0 0 0.44629 1 11462 11462 39.957 0 1 710920 + 3555 16738 2439 2486 4008 4008 0.07524928199802616 AVTTLNYF 8 Unmodified _AVTTLNYF_ 0 0 0 REV__ENSG00000136051|ENST00000332180|WASHC4 REV__ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7422180175781 2 464.742368 927.470183 0.018418 8.5598E-06 -0.25609 -0.00011902 -0.23767 -0.00011046 464.7422975216262 66.307 0.23661 65.823 65.728 65.964 -0.48323 18 12 2 0 0 0 0.65867 1 36196 36196 20.871 1.4322 1 2306700 + 3556 20132 2440 2487 4009 4009 0.00354693631857117 AVTTSNIPV 9 Unmodified _AVTTSNIPV_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;SAP130|p.V767Wfs*18|1|0.09|ENSG00000136715|chr2:127955082-127955082|C/-|frameshift_variant nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2537841796875 2 451.2531 900.491647 0.51941 0.00023439 0.75725 0.00034171 1.2767 0.0005761 451.25346561996497 28.786 0.18735 28.816 28.707 28.894 0.029732 12 7 2 0 0 0 0.1773 1 15005 15005 25.399 3.6527 1 5011600 3557 4847 2441 2488 4010 4010 0.037420786605594 AVTVHSCL 8 Unmodified _AVTVHSCL_ 0 0 0 ENST00000552783.5_1_12:50616347-50616428:-|nuORF ENST00000552783.5_1_12:50616347-50616428:-|nuORF ENST00000552783.5_1_12:50616347-50616428:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2168273925781 2 415.215463 828.416374 NaN NaN NaN NaN NaN NaN NaN 62.86 1 62.374 61.874 62.874 -0.48617 0 0 0 0.94749 1 34270 34270 11.114 0 1 3558 15182 2442 2489 4011 4011 -0.0046980207149545095 AVTVSSYAY 9 Unmodified _AVTVSSYAY_ 0 0 0 nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3 nc|ENSG00000187605|O43151-2|TET3 nc|ENSG00000187605|O43151-2|TET3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2354736328125 2 480.737283 959.460012 -0.39953 -0.00019207 -3.3384 -0.0016049 -3.7379 -0.001797 480.73537399092567 55.853 0.16135 55.853 55.719 55.881 0 16 11 2 0 0 0 0.30562 1 31026 31026 16.942 1.0951 1 2675500 3559 9569 2443 2490 4012 4012 -0.021339140933832823 AVVDVIREL 9 Unmodified _AVVDVIREL_ 0 0 0 ENSG00000159763|ENST00000291009|PIP ENSG00000159763|ENST00000291009|PIP ENSG00000159763|ENST00000291009|PIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3042907714844 2 507.303124 1012.5917 0.53652 0.00027218 -0.19674 -9.9808E-05 0.33978 0.00017237 507.3029700465363 68.549 0.21761 68.549 68.391 68.609 0 16 9 2 0 0 0 0.30202 1 38186 38186 17.113 2.5312 1 578580 3560 6673 2444 2491 4013 4013 0.08590315994376851 AVVHPPPS 8 Unmodified _AVVHPPPS_ 0 0 0 REV__ENST00000337537.7_1_14:64009836-64009923:-|nuORF REV__ENST00000337537.7_1_14:64009836-64009923:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.4418334960938 1 803.441015 802.433738 0.17366 0.00013953 0.19785 0.00015896 0.37151 0.00029849 803.4411861779406 64.6 0.4733 64.115 63.908 64.381 -0.48512 40 21 2 0 0 0 0.78849 1 35364 35364 9.3474 0 1 3136000 + 3561 25663 2445 2492 4014 4014 0.024618615258077625 AVVSAPVP 8 Unmodified _AVVSAPVP_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MSMS AL20221201_MKP_PDAC_01 4 370.2212219238281 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 78.15 1 71.974 71.474 72.474 -6.1757 0 0 0 0.77249 1 51142 51142 24.674 0 1 3562 4772 2446 2493 4015 4015 0.047913432942777945 AVVSAPVP 8 Unmodified _AVVSAPVP_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MSMS AL20221201_MKP_PDAC_01 4 370.2210998535156 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 78.327 1 72.151 71.651 72.651 -6.1757 0 0 0 0.77249 1 51265 51265 24.674 3.8027 1 3563 4772 2446 2493 4016 4016 0.047913432942777945 AVVSCMFQNGF 11 Unmodified _AVVSCMFQNGF_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7688598632812 2 601.770277 1201.526 NaN NaN NaN NaN NaN NaN NaN 77.066 1 76.587 76.087 77.087 -0.47945 0 0 0 0.94144 1 42191 42191 1.4819 0.68827 1 + 3564 23757 2447 2494 4017 4017 -0.06670164514503085 AVWAAVQAV 9 Unmodified _AVWAAVQAV_ 0 0 0 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.759033203125 2 457.758352 913.502152 0.53882 0.00024665 0.41464 0.00018981 0.95346 0.00043646 457.7586889435066 64.395 0.27568 63.91 63.739 64.014 -0.48512 18 12 2 0 0 0 0.085487 1 35155 35155 36.466 18.331 1 669840 3565 9820 2448 2495 4018 4018 0.04194106105649098 AVWELGGI 8 Unmodified _AVWELGGI_ 0 0 0 ENST00000502670.1_1_5:176731297-176731390:+|nuORF ENST00000502670.1_1_5:176731297-176731390:+|nuORF ENST00000502670.1_1_5:176731297-176731390:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7326049804688 2 422.731803 843.449054 NaN NaN NaN NaN NaN NaN NaN 60.599 1 60.599 60.099 61.099 0 0 0 0 0.95201 1 33795 33795 10.183 0.83596 1 3566 14455 2449 2496 4019 4019 0.021067283230081557 AVWGEMPFKEF 11 Unmodified _AVWGEMPFKEF_ 0 0 0 REV__ENSG00000177464|ENST00000323040|GPR4 REV__ENSG00000177464|ENST00000323040|GPR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5503234863281 3 447.549641 1339.62709 1.1357 0.00050827 0.10875 4.8671E-05 1.2444 0.00055694 447.5495810977146 89.922 0.60108 83.746 83.526 84.127 -6.1757 86 33 3 0 0 0 0.65846 1 59453 59453 4.1166 1.2733 1 18495000 + 3567 22984 2450 2497 4020 4020 -0.029133895401400878 AVWKANRG 8 Unmodified _AVWKANRG_ 0 0 0 REV__ENST00000453450.2_1_12:120031743-120072065:+|nuORF REV__ENST00000453450.2_1_12:120031743-120072065:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 451.2249755859375 2 451.253769 900.492984 1.218 0.00054961 -0.72316 -0.00032633 0.4948 0.00022328 451.2534701496897 32.337 0.28302 28.48 28.352 28.635 -3.8562 29 16 2 0 0 0 8.7369 1 18369 18369 14.582 0 1 16229000 + 3568 24384 2451 2498 4021 4021 0.03875757539992719 AVWNGGKDLL 10 Unmodified _AVWNGGKDLL_ 0 0 0 ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;nc|ENSG00000182333|P07098-4|LIPF ENSG00000182333|ENST00000238983|LIPF ENSG00000182333|ENST00000238983|LIPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1992492675781 3 358.197708 1071.57129 1.6881 0.00060466 -0.36787 -0.00013177 1.3202 0.00047289 358.1975150299234 35.704 0.47628 31.512 31.218 31.694 -4.1928 65 29 3 0 0 0 0.55245 1 20870 20870 13.615 5.4593 1 31506000 3569 9048 2452 2499 4022 4022 0.03837145334568959 AVWNRQRGI 9 Unmodified _AVWNRQRGI_ 0 0 0 ENST00000503780.5_2_4:175204968-175219170:+|nuORF;ENST00000505124.5_2_4:175204968-175220231:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.20947265625 3 367.20883 1098.60466 0.056132 2.0612E-05 1.0599 0.00038919 1.116 0.0004098 367.20911403127997 20.141 0.1836 20.152 20.024 20.208 0.010551 22 8 4 0 0 0 0.38785 1 10250 10250 13.042 3.4985 1 1664700 3570 14477 2453 2500 4023 4023 0.05930191897118675 AVWTRQYEDR 10 Unmodified _AVWTRQYEDR_ 0 0 0 REV__ENSG00000214827|ENST00000369476|MTCP1 REV__ENSG00000214827|ENST00000369476|MTCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8868713378906 3 441.886192 1322.63675 NaN NaN NaN NaN NaN NaN NaN 80.225 1 80.282 79.782 80.782 0.057587 0 0 0 0.85122 1 44337 44337 5.7834 1.0675 1 + 3571 24324 2454 2501 4024 4024 -0.011664852104104284 AVYDVPPSV 9 Unmodified _AVYDVPPSV_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4873657226562 1 946.488024 945.480748 -0.013706 -1.2973E-05 0.51092 0.00048358 0.49722 0.00047061 946.4886691378101 51.366 0.86371 51.366 51.132 51.996 0 51 39 2 0 0 0 0.2143 3 28292 28292;28399;28601 21.747 4.4107 1 1334000 3572 728 2455 2502 4025;4026;4027 4025 0.005826762862966461 AVYDVPPSV 9 Unmodified _AVYDVPPSV_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.49072265625 1 946.488024 945.480748 -0.60731 -0.00057481 -0.48935 -0.00046317 -1.0967 -0.001038 946.489722561414 52.14 0.45125 52.14 52.016 52.467 0 30 19 2 0 0 0 0.095405 2 28818 28818;28928 34.102 10.954 1 1389300 3573 728 2455 2502 4028;4029 4028 0.005826762862966461 AVYDVPPSV 9 Unmodified _AVYDVPPSV_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.490234375 1 946.488024 945.480748 -0.30486 -0.00028855 1.8613 0.0017617 1.5565 0.0014732 946.4901430383289 52.678 0.17638 52.678 52.552 52.728 0 9 7 2 0 0 0 0.30562 1 29175 29175 16.942 4.4107 1 585940 3574 728 2455 2502 4030 4030 0.005826762862966461 AVYEGSPFTL 10 Unmodified _AVYEGSPFTL_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2713623046875 2 542.27149 1082.52843 0.24318 0.00013187 -0.032713 -1.7739E-05 0.21047 0.00011413 542.2714665964509 90.466 0.42612 89.971 89.713 90.139 -0.49457 58 19 4 0 0 0 0.50944 1 49426 49426 15.847 4.2069 1 4556600 + 3575 17964 2456 2503 4031 4031 -0.009536695135011541 AVYEGSPFTL 10 Unmodified _AVYEGSPFTL_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MSMS AL20221201_MKP_PDAC_01 4 542.2720336914062 2 542.27149 1082.52843 NaN NaN NaN NaN NaN NaN NaN 99.596 1 93.42 92.92 93.92 -6.1757 0 0 0 0.5926 1 66374 66374 21.747 5.8995 1 + 3576 17964 2456 2503 4032 4032 -0.009536695135011541 AVYEKQRYQDL 11 Unmodified _AVYEKQRYQDL_ 0 0 0 REV__nc|ENSG00000133704|O15397-2|IPO8 REV__nc|ENSG00000133704|O15397-2|IPO8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7508544921875 3 471.577136 1411.70958 0.34671 0.0001635 -1.6418 -0.00077423 -1.2951 -0.00061073 471.57643413507066 63.586 0.25933 63.586 63.52 63.779 0 14 10 2 0 0 0 0.30533 1 35546 35546 1.4551 0 1 706730 + 3577 19931 2457 2504 4033 4033 0.020192237923765788 AVYFHNDQL 9 Unmodified _AVYFHNDQL_ 0 0 0 REV__ENSG00000214866|ENST00000399143|DCDC2C REV__ENSG00000214866|ENST00000399143|DCDC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.27099609375 2 553.766906 1105.51926 0.71842 0.00039784 -0.61453 -0.00034031 0.10388 5.7528E-05 553.7678693860182 57.021 0.40876 57.021 56.813 57.221 0 35 17 3 0 0 0 0.37804 1 31668 31668 13.508 0 1 5546200 + 3578 24326 2458 2505 4034 4034 -0.029280180792056854 AVYTSFLHCCR 11 Unmodified _AVYTSFLHCCR_ 0 0 0 REV__ENSG00000182827|ENST00000366812|ACBD3 REV__ENSG00000182827|ENST00000366812|ACBD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.8231201171875 2 650.302275 1298.59 NaN NaN NaN NaN NaN NaN NaN 46.138 1 46.138 45.638 46.638 0 0 0 0 0.93224 1 25197 25197 5.7319 0 1 + 3579 23298 2459 2506 4035 4035 -0.047353843575137944 AVYVFIII 8 Unmodified _AVYVFIII_ 0 0 0 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.2937927246094 2 469.291497 936.568441 1.2989 0.00060957 2.4553 0.0011522 3.7542 0.0017618 469.29215180899496 50.099 0.32424 50.05 49.886 50.21 -0.048824 34 15 3 0 0 0 0.76859 1 27166 27166 11.114 0 1 2631000 3580 10319 2460 2507 4036 4036 0.09761921947722385 AVYYCNYP 8 Unmodified _AVYYCNYP_ 0 0 0 ENSG00000164736|ENST00000297316|SOX17 ENSG00000164736|ENST00000297316|SOX17 ENSG00000164736|ENST00000297316|SOX17 MSMS AL20221201_MKP_PDAC_01 4 496.7125244140625 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 15.421 1 12.894 12.394 13.394 -2.5273 0 0 0 0.97444 1 7910 7910 0.79363 0 1 3581 7235 2461 2508 4037 4037 -0.08509525653983019 AWAGGVGR 8 Unmodified _AWAGGVGR_ 0 0 0 REV__ENST00000522792.1_1_5:138268134-138269775:+|nuORF REV__ENST00000522792.1_1_5:138268134-138269775:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8885803222656 2 387.206287 772.398021 -0.2165 -8.383E-05 2.4473 0.00094762 2.2308 0.00086379 387.20723201306356 30.863 0.181 30.893 30.856 31.037 0.030106 10 7 2 0 0 0 8.7369 1 16207 16207 2.3027 0 1 577770 + 3582 28305 2462 2509 4038 4038 0.002718240688068363 AWAPKPYHKF 10 Unmodified _AWAPKPYHKF_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5585021972656 3 415.557348 1243.65021 0.035167 1.4614E-05 1.2842 0.00053367 1.3194 0.00054829 415.55785327777824 28.383 0.30745 28.413 28.262 28.569 0.029564 40 12 5 0 0 0 0.13391 1 14746 14746 29.437 23.569 1 45619000 3583 1049;6319;5339 2463 2510 4039 4039 0.038134173594926324 AWARPLSVSF 10 Unmodified _AWARPLSVSF_ 0 0 0 ENSG00000101346|ENST00000375749|POFUT1;ENST00000486717.5_1_20:30795744-30803181:+|nuORF;nc|ENSG00000101346|Q9H488-2|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.309326171875 2 567.308741 1132.60293 1.1047 0.00062668 0.063361 3.5945E-05 1.168 0.00066263 567.308651685209 65.911 0.25056 65.921 65.813 66.064 0.0095596 22 12 2 0 0 0 0.14944 1 36148 36148 53.404 28.005 1 5362500 3584 1950 2464 2511 4040 4040 0.04193138088521664 AWARTIHTF 9 Unmodified _AWARTIHTF_ 0 0 0 ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.1969909667969 3 368.197931 1101.57196 0.094716 3.4874E-05 -1.3202 -0.00048608 -1.2255 -0.00045121 368.19729286305994 38.611 0.18137 38.623 38.517 38.698 0.011452 15 8 2 0 0 0 0.48152 1 20538 20538 13.042 9.0981 1 2276600 3585 3995 2465 2512 4041 4041 0.025239847742795973 AWCKFHEIL 9 Unmodified _AWCKFHEIL_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2;CMTR2|p.S124I|1|0.21|ENSG00000180917|chr16:71285550-71285550|C/A|missense_variant ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.314208984375 2 573.791869 1145.56919 0.2501 0.0001435 -0.35906 -0.00020603 -0.10896 -6.2521E-05 573.7915742930236 56.075 0.31762 50.124 49.994 50.312 -5.9515 31 18 2 0 0 0 0.18118 1 35886 35886 19.257 2.3147 1 23133000 3586 8933 2466 2513 4042 4042 0.00222393325111625 AWCWAAQA 8 Unmodified _AWCWAAQA_ 0 0 0 REV__ENST00000476295.5_1_7:148984726-148990880:+|nuORF REV__ENST00000476295.5_1_7:148984726-148990880:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.494873046875 1 906.392684 905.385408 -0.15532 -0.00014078 -1.907 -0.0017285 -2.0623 -0.0018693 906.3911910018219 103.32 0.065231 103.21 103.16 103.23 -0.10458 6 2 3 0 0 0 0.80975 1 56334 56334 0.79363 0 1 594660 + 3587 27592 2467 2514 4043 4043 -0.07106955385756919 AWDDQSTAL 9 Unmodified _AWDDQSTAL_ 0 0 0 REV__ENST00000497858.1_1_1:38027642-38030659:+|nuORF REV__ENST00000497858.1_1_1:38027642-38030659:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7279968261719 2 503.727446 1005.44034 0.20065 0.00010108 0.3359 0.0001692 0.53655 0.00027028 503.72758822380257 44.354 0.34219 44.354 44.19 44.532 0 38 17 3 0 0 0 0.1773 1 24100 24100 25.399 2.2509 1 41999000 + 3588 27983 2468 2515 4044 4044 -0.06216290104134714 AWDEADVRF 9 Unmodified _AWDEADVRF_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7566528320312 2 554.756538 1107.49852 1.1195 0.00062107 -2.1569 -0.0011966 -1.0374 -0.00057551 554.7555180689143 54.677 0.23742 54.677 54.528 54.765 0 16 9 2 0 0 0 0.078314 1 30368 30368 38.176 21.233 1 2206300 3589 6691 2469 2516 4045 4045 -0.050926084588581944 AWDEVGDEF 9 Unmodified _AWDEVGDEF_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.22021484375 2 534.219454 1066.42436 0.42402 0.00022652 -0.2673 -0.0001428 0.15672 8.3722E-05 534.2191361080585 61.233 0.27531 61.233 61.045 61.321 0 22 11 3 0 0 0 0.54444 1 34119 34119 4.756 2.1785 1 686890 3590 8996 2470 2517 4046 4046 -0.10619996341029037 AWDIAIATM 9 Oxidation (M) _AWDIAIATM(Oxidation (M))_ AWDIAIATM(1) AWDIAIATM(57) 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2460021972656 2 504.24696 1006.47937 0.19037 9.5995E-05 -1.3878 -0.00069979 -1.1974 -0.00060379 504.24634233818506 67.934 0.44818 67.452 67.189 67.637 -0.48219 42 20 3 0 0 0 0.026094 2 37095 37095;37207 57.471 35.725 1 4743800 3591 275 2471 2518 4047;4048 4047 23 -0.023612810741042267 AWDIAIATM 9 Oxidation (M) _AWDIAIATM(Oxidation (M))_ 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.24696 1006.47937 0.66992 0.00033781 -2.7855 -0.0014046 -2.1156 -0.0010668 504.2453663000729 67.359 0.18884 67.359 67.248 67.437 0 -0.046508 -0.0011579 NaN 57.471 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 577790 3592 275 2471 2518 23 -0.023612810741042267 AWDIAIATM 9 Unmodified _AWDIAIATM_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2486572265625 2 496.249503 990.484453 1.0838 0.00053782 -0.14682 -7.286E-05 0.93694 0.00046496 496.24939363440075 92.175 0.47791 85.999 85.757 86.235 -6.1757 46 28 2 0 0 0 0.047196 2 60952 60952;61076 46.021 31.183 1 11425000 3593 275 2471 2519 4049;4050 4049 -0.011169772114953957 AWDIGTIH 8 Unmodified _AWDIGTIH_ 0 0 0 REV__ENSG00000241685|ENST00000262942|ARPC1A REV__ENSG00000241685|ENST00000262942|ARPC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7322692871094 2 456.732335 911.450116 0.60359 0.00027568 -0.66189 -0.00030231 -0.058298 -2.6627E-05 456.73155503920924 48.072 0.13438 48.072 47.978 48.112 0 9 6 2 0 0 0 0.28922 1 26343 26343 56.541 20.075 1 2333800 + 3594 24453 2472 2520 4051 4051 -0.009150573080887625 AWDIGVGVTW 10 Unmodified _AWDIGVGVTW_ 0 0 0 REV__ENST00000460254.1_1_22:47131346-47133979:-|nuORF REV__ENST00000460254.1_1_22:47131346-47133979:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.857421875 3 368.522192 1102.54475 0.77376 0.00028515 1.122 0.00041347 1.8957 0.00069862 368.5226095084422 15.532 0.16431 13.005 12.911 13.075 -2.5273 69 39 2 0 0 0 0.5802 1 7963 7963 12.175 2.0242 1 3038100 + 3595 27293 2473 2521 4052 4052 -0.0024254355676021078 AWDLGTNFF 9 Unmodified _AWDLGTNFF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6;ENST00000506571.1_1_4:68544155-68566852:-|nuORF ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7510375976562 2 535.750724 1069.4869 1.9651 0.0010528 0.030879 1.6543E-05 1.9959 0.0010693 535.7501624072844 94.173 0.37894 94.188 94.003 94.382 0.014252 28 13 3 0 0 0 0.16226 1 52365 52365 26.884 14.352 1 2211200 3596 601 2474 2522 4053 4053 -0.04506805482196796 AWDLGTNFF 9 Unmodified _AWDLGTNFF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6;ENST00000506571.1_1_4:68544155-68566852:-|nuORF ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7481079101562 2 535.750724 1069.4869 1.2876 0.00068985 -4.0159 -0.0021515 -2.7283 -0.0014617 535.7474971067005 100.09 0.13768 93.913 93.819 93.957 -6.1757 19 8 3 0 0 0 0.070838 1 66856 66856 39.957 24.11 1 23943000 3597 601 2474 2522 4054 4054 -0.04506805482196796 AWEERETIL 9 Unmodified _AWEERETIL_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.794189453125 2 573.793121 1145.57169 0.65759 0.00037732 -0.21962 -0.00012601 0.43798 0.00025131 573.7929237133393 49.953 0.23847 49.953 49.793 50.032 0 29 10 4 0 0 0 0.030186 1 27478 27478 59.368 59.368 1 8027500 3598 6964 2475 2523 4055 4055 0.0047252026377009315 AWERSYSF 8 Unmodified _AWERSYSF_ 0 0 0 ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENST00000461911.1_1_2:219132163-219134845:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2398681640625 2 523.240524 1044.46649 NaN NaN NaN NaN NaN NaN NaN 99.275 1 99.247 98.747 99.747 -0.028282 0 0 0 0.97444 1 55137 55137 2.5775 0 1 3599 13667 2476 2524 4056 4056 -0.05395976141994652 AWFPAWITL 9 Unmodified _AWFPAWITL_ 0 0 0 ENSG00000175329|ENST00000404699|ISX ENSG00000175329|ENST00000404699|ISX ENSG00000175329|ENST00000404699|ISX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7978515625 2 552.797478 1103.5804 0.1406 7.7725E-05 1.2342 0.00068226 1.3748 0.00075999 552.7983085778105 60.368 0.20241 59.877 59.806 60.009 -0.49079 13 9 2 0 0 0 0.30562 1 32892 32892 16.942 3.0362 1 2608500 3600 8510 2477 2525 4057 4057 0.03275538690877511 AWHCRHCASL 10 Unmodified _AWHCRHCASL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1808776855469 3 395.179777 1182.5175 0.019342 7.6435E-06 1.4449 0.000571 1.4642 0.00057864 395.18035812081683 31.253 0.28588 31.253 31.132 31.418 0 15 13 2 0 0 0 0.70951 1 16287 16287 0.77653 0 1 1321600 3601 2325 2478 2526 4058 4058 -0.06645673640446148 AWHFPYARWED 11 Unmodified _AWHFPYARWED_ 0 0 0 REV__ENSG00000038210|ENST00000264864|PI4K2B REV__ENSG00000038210|ENST00000264864|PI4K2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 739.3353881835938 2 739.336018 1476.65748 0.16349 0.00012087 -1.4749 -0.0010905 -1.3114 -0.00096959 739.3353291600056 58.059 0.20984 58.059 57.944 58.154 0 20 8 3 0 0 0 0.7326 1 32326 32326 1.1933 0.23107 1 1465400 + 3602 17175 2479 2527 4059 4059 -0.061778948307392056 AWHPHTNKF 9 Unmodified _AWHPHTNKF_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8581237792969 3 379.857797 1136.55156 -0.44843 -0.00017034 0.99699 0.00037871 0.54856 0.00020837 379.8583130910578 19.797 0.1549 19.825 19.743 19.898 0.028355 18 8 3 0 0 0 0.43463 1 9993 9993 10.8 5.9025 1 1365600 3603 1639 2480 2528 4060 4060 -0.011251858855530372 AWHPHTNKF 9 Unmodified _AWHPHTNKF_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8582458496094 3 379.857797 1136.55156 0.096991 3.6843E-05 1.2977 0.00049292 1.3946 0.00052977 379.8581640932315 19.865 0.18984 19.873 19.756 19.946 0.0078487 28 9 4 0 0 0 0.011968 1 10105 10105 67.838 48.476 1 3786700 3604 1639 2480 2528 4061 4061 -0.011251858855530372 AWHPHTNKF 9 Unmodified _AWHPHTNKF_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8584899902344 3 379.857797 1136.55156 1.2739 0.00048389 0.65438 0.00024857 1.9282 0.00073246 379.8579220282072 22.147 0.39365 19.412 19.204 19.598 -2.7348 63 21 4 0 0 0 0.0090948 2 11930 11826;11930 67.838 45.18 1 29711000 3605 1639 2480 2528 4062;4063 4063 -0.011251858855530372 AWHPHTNKF 9 Unmodified _AWHPHTNKF_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000546393.6_1_12:53708449-53708909:-|nuORF ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2839965820312 2 569.283057 1136.55156 0.93741 0.00053365 0.79923 0.00045499 1.7366 0.00098864 569.282921801115 22.13 0.19794 19.395 19.307 19.505 -2.7348 12 10 2 0 0 0 0.039985 1 11905 11905 49.933 34.086 1 1215700 3606 1639 2480 2528 4064 4064 -0.011251858855530372 AWIDLPGEEEG 11 Unmodified _AWIDLPGEEEG_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8569030761719 3 405.855787 1214.54553 -0.14937 -6.0624E-05 1.2794 0.00051926 1.1301 0.00045864 405.85651435335143 52.356 0.42055 52.356 52.152 52.573 0 65 18 5 0 0 0 0.67922 1 29006 29006 2.8433 0 1 33180000 + 3607 23076 2481 2529 4065 4065 -0.05315793698378002 AWIDLPGEEEG 11 Unmodified _AWIDLPGEEEG_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8558959960938 3 405.855787 1214.54553 0.35677 0.0001448 0.35193 0.00014283 0.7087 0.00028763 405.8561611656506 52.959 0.42368 52.507 52.299 52.723 -0.45173 94 21 6 0 0 0 0.67922 1 28562 28562 2.8433 0.59056 1 79707000 + 3608 23076 2481 2529 4066 4066 -0.05315793698378002 AWIDLPGEEEG 11 Unmodified _AWIDLPGEEEG_ 0 0 0 REV__ENSG00000178974|ENST00000313833|FBXO34 REV__ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8563842773438 3 405.855787 1214.54553 0.52466 0.00021294 0.25214 0.00010233 0.7768 0.00031527 405.8560918021104 52.608 0.31996 52.549 52.388 52.708 -0.058918 47 15 4 0 0 0 0.67922 1 28571 28571 2.8433 0 1 11631000 + 3609 23076 2481 2529 4067 4067 -0.05315793698378002 AWIEHVHVI 9 Unmodified _AWIEHVHVI_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5376892089844 3 368.538064 1102.59236 0.3711 0.00013676 -0.71905 -0.000265 -0.34795 -0.00012823 368.5377249825645 53.231 0.27526 52.779 52.647 52.922 -0.45173 29 13 3 0 0 0 0.040472 1 28783 28783 52.268 28.479 1 5571100 3610 1432 2482 2530 4068 4068 0.04517155434086817 AWIEHVHVI 9 Unmodified _AWIEHVHVI_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3025512695312 2 552.303458 1102.59236 0.5427 0.00029974 -0.83214 -0.00045959 -0.28944 -0.00015986 552.3031603043294 52.839 0.19691 52.776 52.704 52.901 -0.063423 19 9 3 0 0 0 0.019979 1 28652 28652 63.563 47.716 1 2978500 3611 1432 2482 2530 4069 4069 0.04517155434086817 AWIEHVHVI 9 Unmodified _AWIEHVHVI_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5386962890625 3 368.538064 1102.59236 2.0409 0.00075214 0.48944 0.00018038 2.5303 0.00093251 368.5382100784465 58.628 0.31475 52.554 52.387 52.702 -6.0745 23 17 2 0 0 0 0.045537 1 37638 37638 41.84 23.467 1 7717300 3612 1432 2482 2530 4070 4070 0.04517155434086817 AWILLRQRHRI 11 Unmodified _AWILLRQRHRI_ 0 0 0 ENST00000548924.5_1_12:70901743-70904223:+|nuORF;ENST00000549616.5_1_12:70901743-70914019:+|nuORF ENST00000548924.5_1_12:70901743-70904223:+|nuORF ENST00000548924.5_1_12:70901743-70904223:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 731.4482421875 2 731.449311 1460.88407 NaN NaN NaN NaN NaN NaN NaN 104.99 1 98.816 98.316 99.316 -6.1757 0 0 0 0.93969 1 70292 70292 2.7352 1.5419 1 3613 15142 2483 2531 4071 4071 0.1720631351886368 AWKEPKTIY 9 Unmodified _AWKEPKTIY_ 0 0 0 REV__ENSG00000172469|ENST00000358812|MANEA REV__ENSG00000172469|ENST00000358812|MANEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2003173828125 3 379.209725 1134.60735 NaN NaN NaN NaN NaN NaN NaN 44.626 1 44.31 43.81 44.81 -0.31585 0 0 0 0.78465 1 23815 23815 6.6304 3.5581 1 + 3614 22652 2484 2532 4072 4072 0.045426025114238655 AWLLTNSWL 9 Unmodified _AWLLTNSWL_ 0 0 0 ENST00000454230.1_2_2:98949964-98950527:-|nuORF ENST00000454230.1_2_2:98949964-98950527:-|nuORF ENST00000454230.1_2_2:98949964-98950527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3033447265625 2 552.297842 1102.58113 0.45912 0.00025357 -1.5885 -0.0008773 -1.1293 -0.00062373 552.2971140294237 53.024 0.60322 52.572 52.36 52.963 -0.45173 85 29 4 0 0 0 0.1773 1 28792 28792 25.399 0 1 31330000 3615 13569 2485 2533 4073 4073 0.033943333399292897 AWLRKELTEMR 11 Unmodified _AWLRKELTEMR_ 0 0 0 ENSG00000154319|ENST00000284486|FAM167A ENSG00000154319|ENST00000284486|FAM167A ENSG00000154319|ENST00000284486|FAM167A MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.9490661621094 4 358.94869 1431.76565 1.3353 0.00047931 0.39973 0.00014348 1.735 0.00062279 358.9488381738488 18.229 0.71243 15.607 15.301 16.014 -2.6215 190 62 4 0 0 0 0.72131 1 9780 9780 2.2527 0.92309 1 19042000 3616 6320 2486 2534 4074 4074 0.06704153428177051 AWMSSVFHF 9 Oxidation (M) _AWM(Oxidation (M))SSVFHF_ AWM(1)SSVFHF AWM(67)SSVFHF 0 0 1 ENSG00000110628|ENST00000649076|SLC22A18;chr11:2919407-2922436|57|15.86|0.86|4.2|+|0|SLC22A18,SLC22A18|1 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2532348632812 2 564.252577 1126.4906 0.8137 0.00045913 0.41211 0.00023253 1.2258 0.00069166 564.2526256683674 70.131 0.23878 70.166 70.073 70.312 0.035507 24 11 3 0 0 0 0.016494 1 38611 38611 67.035 52.454 1 3449800 3617 2728 2487 2535 4075 4075 475 -0.06758458979970783 AWMSSVFHF 9 Oxidation (M) _AWM(Oxidation (M))SSVFHF_ AWM(1)SSVFHF AWM(57)SSVFHF 0 0 1 ENSG00000110628|ENST00000649076|SLC22A18;chr11:2919407-2922436|57|15.86|0.86|4.2|+|0|SLC22A18,SLC22A18|1 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.25390625 2 564.252577 1126.4906 1.1135 0.00062831 1.9484 0.0010994 3.062 0.0017277 564.2528738269639 70.482 0.40591 70.518 70.252 70.658 0.035515 40 18 3 0 0 0 0.027803 1 38785 38785 56.541 41.96 1 3488100 3618 2728 2487 2535 4076 4076 475 -0.06758458979970783 AWMVIALIL 9 Unmodified _AWMVIALIL_ 0 0 0 ENSG00000163683|ENST00000295958|SMIM14 ENSG00000163683|ENST00000295958|SMIM14 ENSG00000163683|ENST00000295958|SMIM14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3136596679688 2 515.311906 1028.60926 NaN NaN NaN NaN NaN NaN NaN 67.962 1 67.48 66.98 67.98 -0.48218 0 0 0 0.54015 1 37136 37136 14.582 0 1 3619 7048 2488 2536 4077 4077 0.09609939995675632 AWNKVAHSF 9 Unmodified _AWNKVAHSF_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8497924804688 3 353.850531 1058.52976 -0.31039 -0.00010983 -0.28759 -0.00010177 -0.59799 -0.0002116 353.85031724046337 31.366 0.16062 31.396 31.272 31.432 0.030106 10 6 2 0 0 0 0.039985 1 16414 16414 38.615 30.459 1 2107300 3620 7997 2489 2537 4078 4078 0.002840093658733167 AWNKVAHSF 9 Unmodified _AWNKVAHSF_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 353.850531 1058.52976 1.5225 0.00053875 0.44901 0.00015888 1.9715 0.00069763 353.85023074780923 35.154 0.27314 31.059 30.935 31.208 -4.0951 -0.1687 0.00053395 NaN 38.615 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8858000 3621 7997 2489 2537 0.002840093658733167 AWPAPLFGLLF 11 Unmodified _AWPAPLFGLLF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3493041992188 2 616.347335 1230.68012 1.343 0.00082777 -0.16253 -0.00010017 1.1805 0.0007276 616.8492800683841 103.01 0.043571 96.833 96.805 96.849 -6.1757 18 11 2 0 0 0 0.39552 1 69086 69086 21.747 9.2151 1 2955400 3622 3859 2490 2538 4079 4079 0.07400356304856359 AWPPIVWDVR 10 Unmodified _AWPPIVWDVR_ 0 0 0 ENSG00000214787|ENST00000651255|MS4A4E;ENST00000504880.5_1_5:54992856-54993786:-|nuORF ENSG00000214787|ENST00000651255|MS4A4E ENSG00000214787|ENST00000651255|MS4A4E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1238.466430664062 1 1238.66805 1237.66078 -0.51498 -0.00063789 1.476 0.0018282 0.96097 0.0011903 1238.6717134350667 65.433 0.15713 65.433 65.37 65.528 0 7 5 2 0 0 0 0.24007 1 36495 36495 0.45834 0.10771 1 598530 3623 10509 2491 2539 4080 4080 0.05145400013930157 AWPRRTRKC 9 Unmodified _AWPRRTRKC_ 0 0 0 ENST00000342505.4_1_1:65352011-65432179:-|nuORF ENST00000342505.4_1_1:65352011-65432179:-|nuORF ENST00000342505.4_1_1:65352011-65432179:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8849182128906 3 391.885581 1172.63491 0.27178 0.00010651 -0.99161 -0.0003886 -0.71983 -0.00028209 391.885061553643 56.7 0.20296 56.631 56.517 56.72 -0.068737 13 9 2 0 0 0 0.54213 1 30859 30859 4.897 1.9018 1 2011200 3624 11985 2492 2540 4081 4081 0.05550227290677867 AWRMHVCLR 9 Unmodified _AWRMHVCLR_ 0 0 0 ENST00000300976.8_1_19:18780088-18780439:+|nuORF ENST00000300976.8_1_19:18780088-18780439:+|nuORF ENST00000300976.8_1_19:18780088-18780439:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2028503417969 3 391.204034 1170.59027 0.010924 4.2736E-06 -0.30098 -0.00011775 -0.29006 -0.00011347 391.2038704341658 20.213 0.34663 20.223 20.006 20.353 0.010553 39 18 3 0 0 0 0.55775 1 10272 10272 2.2828 0 1 1088100 3625 11560 2493 2541 4082 4082 0.01180080152971641 AWRRGPAAPPG 11 Unmodified _AWRRGPAAPPG_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MSMS AL20221201_MKP_PDAC_01 4 379.2099914550781 3 379.20883 1134.60466 NaN NaN NaN NaN NaN NaN NaN 37.823 1 33.454 32.954 33.954 -4.3689 0 0 0 0.77961 1 22235 22235 10.315 5.2677 1 3626 4741 2494 2542 4083 4083 0.042741918971159976 AWSSALDKLL 10 Unmodified _AWSSALDKLL_ 0 0 0 REV__ENST00000469556.1_1_1:24122614-24123094:-|nuORF REV__ENST00000469556.1_1_1:24122614-24123094:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3027954101562 2 552.308406 1102.60226 1.0996 0.00060734 -3.9361 -0.002174 -2.8365 -0.0015666 552.3030101564079 81.652 0.74864 75.477 74.996 75.745 -6.1757 75 42 3 0 0 0 0.44373 1 53709 53709 19.257 3.4098 1 13792000 + 3627 27468 2495 2543 4084 4084 0.05506298648788288 AWTELHLKKL 10 Unmodified _AWTELHLKKL_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5802001953125 3 413.580041 1237.71829 0.41809 0.00017291 -0.11154 -4.6129E-05 0.30655 0.00012678 413.58003545084864 52.259 0.3214 52.2 52.027 52.348 -0.058918 48 15 4 0 0 0 0.45406 1 28255 28255 18.721 0.85806 1 29533000 + 3628 23160 2496 2544 4085 4085 0.1089424221952413 AWTELHLKKL 10 Unmodified _AWTELHLKKL_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5809936523438 3 413.580041 1237.71829 0.97745 0.00040425 0.20949 8.6641E-05 1.1869 0.0004909 413.58007973285976 90.222 0.41029 84.046 83.826 84.236 -6.1757 59 23 3 0 0 0 0.39689 2 59514 59514;59652 21.799 3.9363 1 44996000 + 3629 23160 2496 2544 4086;4087 4086 0.1089424221952413 AWVFNLWRQ 9 Unmodified _AWVFNLWRQ_ 0 0 0 ENST00000376440.6_1_13:100038329-100038548:+|nuORF ENST00000376440.6_1_13:100038329-100038548:+|nuORF ENST00000376440.6_1_13:100038329-100038548:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.2187805175781 3 407.217214 1218.62981 NaN NaN NaN NaN NaN NaN NaN 16.372 1 13.815 13.315 14.315 -2.557 0 0 0 0.83049 1 8477 8477 2.2828 0.5405 1 3630 12495 2497 2545 4088 4088 0.029242466996720395 AWVRPQWRRWW 11 Unmodified _AWVRPQWRRWW_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MSMS AL20221201_MKP_PDAC_01 4 813.9313354492188 2 813.931286 1625.84802 NaN NaN NaN NaN NaN NaN NaN 99.399 1 93.224 92.724 93.724 -6.1757 0 0 0 0.94301 1 66186 66186 0.35063 0 1 + 3631 19788 2498 2546 4089 4089 0.06012856341999395 AWWWRPWWSRL 11 Unmodified _AWWWRPWWSRL_ 0 0 0 REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 815.41455078125 2 815.414937 1628.81532 NaN NaN NaN NaN NaN NaN NaN 98.982 1 92.806 92.306 93.306 -6.1757 0 0 0 0.94165 1 65791 65791 1.3295 0 1 + 3632 25819 2499 2547 4090 4090 0.0260664921913758 AWYGSDEYL 9 Unmodified _AWYGSDEYL_ 0 0 0 ENSG00000151320|ENST00000280979|AKAP6;nc|ENSG00000151320|Q13023-2|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.4954528808594 3 368.49419 1102.46074 1.2955 0.00047737 0.13035 4.8034E-05 1.4258 0.0005254 368.49489454034097 43.217 0.46577 38.452 38.258 38.724 -4.7648 65 32 3 0 0 0 0.41742 1 26188 26188 7.609 3.4194 1 24061000 3633 6103 2500 2548 4091 4091 -0.08639119444342214 AYAAQPFLL 9 Unmodified _AYAAQPFLL_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2742309570312 2 497.273835 992.533118 0.69552 0.00034586 0.73567 0.00036583 1.4312 0.00071169 497.2743271926922 81.684 0.49828 81.189 80.972 81.471 -0.4952 44 19 3 0 0 0 0.045537 2 44779 44682;44779 46.921 26.05 1 3101400 3634 4192 2501 2549 4092;4093 4093 0.03655259419895174 AYAAQPFLL 9 Unmodified _AYAAQPFLL_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 993.5476684570312 1 993.540394 992.533118 0.61505 0.00061107 1.3879 0.0013789 2.0029 0.00199 993.5424973881514 81.692 0.29869 81.197 81.015 81.313 -0.4952 21 11 2 0 0 0 0.10925 2 44732 44693;44732 32.117 15.175 1 1421800 3635 4192 2501 2549 4094;4095 4095 0.03655259419895174 AYAAQPFLL 9 Unmodified _AYAAQPFLL_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.049072265625 2 497.273835 992.533118 1.1657 0.00057968 -0.55932 -0.00027814 0.6064 0.00030155 497.27335342423265 81.113 0.25092 81.172 81.064 81.315 0.059929 13 9 2 0 0 0 0.15246 1 44862 44862 13.508 10.619 1 837600 3636 4192 2501 2549 4096 4096 0.03655259419895174 AYAAQPFLL 9 Unmodified _AYAAQPFLL_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2749328613281 2 497.273835 992.533118 1.1974 0.00059542 -0.26086 -0.00012972 0.93651 0.0004657 497.27416648578475 88.477 0.55578 82.301 82.029 82.584 -6.1757 37 30 2 0 0 0 0.027803 1 58323 58323 56.541 30.2 1 17441000 3637 4192 2501 2549 4097 4097 0.03655259419895174 AYADLVKQAW 10 Unmodified _AYADLVKQAW_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.7671508789062 2 582.806031 1163.59751 1.2849 0.00074883 -2.9865 -0.0017405 -1.7016 -0.0009917 582.8045049215688 64.631 0.35284 58.456 58.221 58.574 -6.1757 28 19 2 0 0 0 0.22327 1 41859 41859 19.257 4.4187 1 11075000 3638 2029;13824 2502 2550 4098 4098 0.022254145060287556 AYADSDEEEL 10 Unmodified _AYADSDEEEL_ 0 0 0 REV__ENSG00000110777|ENST00000393067|POU2AF1 REV__ENSG00000110777|ENST00000393067|POU2AF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1551818847656 3 381.155903 1140.44588 0.44051 0.0001679 0.14275 5.4409E-05 0.58325 0.00022231 381.15590504476125 73.311 1.2224 73.311 72.84 74.062 0 129 57 4 0 0 0 0.71981 1 40658 40658 0.69767 0 1 12445000 + 3639 18721 2503 2551 4099 4099 -0.11872656102991641 AYADVQAVL 9 Unmodified _AYADVQAVL_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.4984130859375 1 949.498923 948.491647 -0.11615 -0.00011028 -0.27848 -0.00026442 -0.39463 -0.0003747 949.4988072050689 59.65 0.33062 59.65 59.489 59.819 0 32 14 4 0 0 0 0.042911 3 33195 33195;33239;33304 48.346 19.859 1 4425700 3640 289 2504 2552 4100;4101;4102 4100 0.01534078660574778 AYADVQAVL 9 Unmodified _AYADVQAVL_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2536926269531 2 475.2531 948.491647 0.49595 0.0002357 0.096111 4.5677E-05 0.59206 0.00028138 475.2532445983097 59.662 0.76018 59.662 59.465 60.225 0 64 34 4 0 0 0 0.070838 2 33201 33201;33316 39.957 16.809 1 13304000 3641 289 2504 2552 4103;4104 4103 0.01534078660574778 AYADVQAVL 9 Unmodified _AYADVQAVL_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 949.4996948242188 1 949.498923 948.491647 0.30552 0.0002901 0.57547 0.00054641 0.881 0.0008365 949.4992872637863 67.531 0.35294 61.355 61.146 61.499 -6.1757 27 19 2 0 0 0 0.022193 3 43895 43855;43895;43942 61.357 23.383 1 10972000 3642 289 2504 2552 4105;4106;4107 4106 0.01534078660574778 AYADVQAVL 9 Unmodified _AYADVQAVL_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2533569335938 2 475.2531 948.491647 0.69714 0.00033132 -0.22913 -0.00010889 0.46801 0.00022243 475.2529422281907 67.519 0.41582 61.343 61.13 61.546 -6.1757 50 23 3 0 0 0 0.012148 2 44075 43937;44075 74.423 38.857 1 35514000 3643 289 2504 2552 4108;4109 4109 0.01534078660574778 AYAEAVQRL 9 Unmodified _AYAEAVQRL_ 0 0 0 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7759704589844 2 510.777274 1019.53999 0.49141 0.000251 2.9746 0.0015194 3.466 0.0017704 510.78012365110914 36.114 0.21881 36.114 36.01 36.229 0 18 10 2 0 0 0 0.028475 1 19155 19155 56.177 16.22 1 4143400 3644 3928 2505 2553 4110 4110 0.031005723004682295 AYAEAVQRL 9 Unmodified _AYAEAVQRL_ 0 0 0 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.8021240234375 2 510.777274 1019.53999 1.0825 0.00055292 1.476 0.00075391 2.5585 0.0013068 510.7781695628206 40.819 0.25151 36.29 36.228 36.48 -4.5294 21 15 2 0 0 0 0.028173 1 24440 24440 65.235 11.402 1 6203400 3645 3928 2505 2553 4111 4111 0.031005723004682295 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2686462402344 2 489.26875 976.522947 -0.11065 -5.4136E-05 0.095203 4.658E-05 -0.015444 -7.5563E-06 489.2686799875875 70.884 0.55226 70.884 70.565 71.117 0 162 48 4 0 0 0 0.019303 2 39483 39384;39483 64.236 22.468 1 50750000 3646 9821 2506 2554 4112;4113 4113 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.5299072265625 1 977.530224 976.522947 -0.20049 -0.00019599 -0.56164 -0.00054902 -0.76213 -0.00074501 977.5296367882008 70.837 0.35509 70.837 70.686 71.041 0 107 40 3 0 0 0 0.010818 2 39504 39400;39504 78.149 24.317 1 7756900 3647 9821 2506 2554 4114;4115 4115 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2690734863281 2 489.26875 976.522947 0.6431 0.00031465 0.44403 0.00021725 1.0871 0.0005319 489.26864987714964 71.308 0.38466 70.831 70.636 71.02 -0.47735 42 16 3 0 0 0 0.019303 2 39076 38977;39076 64.236 19.859 1 6012200 3648 9821 2506 2554 4116;4117 4117 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 977.5274047851562 1 977.530224 976.522947 0.38751 0.0003788 1.353 0.0013226 1.7405 0.0017014 977.5321859019439 71.305 0.27017 70.828 70.705 70.975 -0.47735 18 11 2 0 0 0 0.07916 1 39002 39002 37.974 8.8924 1 1470300 3649 9821 2506 2554 4118 4118 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.269287109375 2 489.26875 976.522947 0.47216 0.00023101 -0.19693 -9.6352E-05 0.27522 0.00013466 489.26877374698574 78.234 0.7401 72.058 71.668 72.408 -6.1757 78 43 2 0 0 0 0.031062 3 51052 51052;51185;51310 54.774 24.137 1 96039000 3650 9821 2506 2554 4119;4120;4121 4119 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 977.5302734375 1 977.530224 976.522947 0.26852 0.00026248 0.72788 0.00071152 0.99639 0.000974 977.5301529335532 78.222 0.49425 72.046 71.814 72.308 -6.1757 64 28 3 0 0 0 0.010818 3 51231 51113;51231;51356 78.149 24.317 1 26956000 3651 9821 2506 2554 4122;4123;4124 4123 0.033746516946507654 AYAENIALL 9 Unmodified _AYAENIALL_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 489.26875 976.522947 1.3625 0.00066662 -0.77441 -0.0003789 0.58807 0.00028773 489.26807455717636 70.874 0.30133 70.909 70.678 70.979 0.035515 0.034344 -0.00086711 NaN 64.236 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1264500 3652 9821 2506 2554 0.033746516946507654 AYAERLGVTF 10 Unmodified _AYAERLGVTF_ 0 0 0 ENST00000576359.1_1_17:80616295-80616565:-|nuORF;ENSG00000172476|ENST00000304236|RAB40A;ENSG00000141542|ENST00000571995|RAB40B;ENSG00000102128|ENST00000218249|RAB40AL ENST00000576359.1_1_17:80616295-80616565:-|nuORF ENST00000576359.1_1_17:80616295-80616565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.799072265625 2 563.798206 1125.58186 0.5361 0.00030225 0.55146 0.00031091 1.0876 0.00061316 563.7986975157728 55.282 0.25495 54.804 54.65 54.905 -0.47798 18 11 2 0 0 0 0.16005 1 29994 29994 38.615 21.502 1 1483600 3653 2020 2507 2555 4125 4125 0.024091279889717043 AYAGYPSQF 9 Unmodified _AYAGYPSQF_ 0 0 0 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2289733886719 2 502.229625 1002.4447 -0.086591 -4.3488E-05 -0.065405 -3.2849E-05 -0.152 -7.6337E-05 502.2292322073421 48.852 0.23544 48.852 48.675 48.91 0 13 10 2 0 0 0 0.027803 1 26824 26824 56.541 20.075 1 1592900 3654 9195 2508 2556 4126 4126 -0.056427808905596066 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2991943359375 2 525.297507 1048.58046 0.092541 4.8612E-05 -1.3644 -0.00071674 -1.2719 -0.00066813 525.2967560728619 51.988 0.79914 51.988 51.753 52.552 0 136 35 6 0 0 0 0.010818 4 28659 28659;28776;28889;28994 78.149 34.291 1 1959999999.9999998 3655 6480 2509 2557 4127;4128;4129;4130 4127 0.05811493900228015 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2971801757812 2 525.297507 1048.58046 0.40429 0.00021237 0.057844 3.0385E-05 0.46213 0.00024276 525.29747263851 52.502 0.36764 52.068 51.891 52.259 -0.43367 61 18 5 0 0 0 0.020973 2 28321 28321;28427 62.573 31.936 1 96774000 3656 6480 2509 2557 4131;4132 4131 0.05811493900228015 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.297607421875 2 525.297507 1048.58046 0.46671 0.00024516 0.02434 1.2786E-05 0.49105 0.00025795 525.2974652560383 52.16 0.3276 52.102 51.961 52.289 -0.058918 49 15 4 0 0 0 0.013041 2 28226 28226;28331 71.922 28.064 1 30593000 3657 6480 2509 2557 4133;4134 4133 0.05811493900228015 AYAIIKEEL 9 Unmodified _AYAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2976684570312 2 525.297507 1048.58046 0.89986 0.0004727 -0.70232 -0.00036893 0.19754 0.00010377 525.2968824825709 58.25 1.0103 52.222 51.905 52.915 -6.0275 198 55 5 0 0 0 0.010818 4 37266 37144;37266;37393;37516 78.149 34.291 1 3902399999.9999995 3658 6480 2509 2557 4135;4136;4137;4138 4136 0.05811493900228015 AYAKFYTLL 9 Unmodified _AYAKFYTLL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3025512695312 2 545.302593 1088.59063 0.29637 0.00016161 -0.39245 -0.000214 -0.096078 -5.2391E-05 545.302358391697 69.993 0.40339 70.024 69.806 70.209 0.030914 60 20 4 0 0 0 0.024882 2 38451 38451;38570 58.679 22.635 1 32959000 3659 4903 2510 2558 4139;4140 4139 0.049881016254630595 AYAKFYTLL 9 Unmodified _AYAKFYTLL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.30224609375 2 545.302593 1088.59063 0.9539 0.00052016 -0.8704 -0.00047463 0.083493 4.5529E-05 545.3016347501868 87.482 0.92416 81.307 80.876 81.8 -6.1757 109 50 3 0 0 0 0.020973 4 57453 57453;57704;57842;57990 62.573 26.528 1 30807000 3660 4903 2510 2558 4141;4142;4143;4144 4141 0.049881016254630595 AYALLHLLL 9 Unmodified _AYALLHLLL_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.821533203125 2 513.820953 1025.62735 2.7499 0.001413 -2.3018 -0.0011827 0.44814 0.00023026 513.8196063772276 96.874 0.23061 96.867 96.698 96.929 -0.007019 18 8 3 0 0 0 0.047696 1 53778 53778 45.75 17.577 1 2743700 3661 10579 2511 2559 4145 4145 0.11556398242055366 AYALLLQHL 9 Unmodified _AYALLLQHL_ 0 0 0 ENST00000482282.5_1_3:48670520-48671236:-|nuORF;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6 ENST00000482282.5_1_3:48670520-48671236:-|nuORF ENST00000482282.5_1_3:48670520-48671236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.3087768554688 2 521.30821 1040.60187 0.62295 0.00032475 -0.052262 -2.7244E-05 0.57069 0.0002975 521.308147282402 74.365 0.2828 73.889 73.714 73.997 -0.47588 29 11 3 0 0 0 0.023164 1 40661 40661 60.39 40.951 1 3212800 3662 14100 2512 2560 4146 4146 0.08318923719616578 AYALLLQHL 9 Unmodified _AYALLLQHL_ 0 0 0 ENST00000482282.5_1_3:48670520-48671236:-|nuORF;ENST00000489483.5_1_3:48670389-48671049:-|nuORF;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-5|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6 ENST00000482282.5_1_3:48670520-48671236:-|nuORF ENST00000482282.5_1_3:48670520-48671236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3086547851562 2 521.30821 1040.60187 0.23581 0.00012293 -0.10276 -5.3572E-05 0.13305 6.936E-05 521.3081069075394 73.85 0.43909 73.894 73.635 74.074 0.043983 64 20 4 0 0 0 0.0094915 2 40608 40608;40716 81.864 44.374 1 111230000 3663 14100 2512 2560 4147;4148 4147 0.08318923719616578 AYAMMDEPWW 10 Unmodified _AYAMMDEPWW_ 0 0 0 ENST00000520748.1_1_5:159707940-159739417:-|nuORF ENST00000520748.1_1_5:159707940-159739417:-|nuORF ENST00000520748.1_1_5:159707940-159739417:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.84521484375 3 433.843948 1298.51002 0.47056 0.00020415 3.237 0.0014043 3.7075 0.0016085 433.84509135623887 85.743 0.20128 85.241 85.143 85.344 -0.5015 13 8 2 0 0 0 0.72196 1 46949 46949 0.15932 0 1 463250 3664 14734 2513 2561 4149 4149 -0.12729870751377348 AYAMRQYFL 9 Oxidation (M) _AYAM(Oxidation (M))RQYFL_ AYAM(1)RQYFL AYAM(55)RQYFL 0 0 1 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7848510742188 2 589.786784 1177.55902 1.1239 0.00066285 -0.26461 -0.00015606 0.85928 0.00050679 589.7863593550302 49.836 0.28203 49.787 49.645 49.927 -0.048828 40 13 4 0 0 0 0.031062 1 26910 26910 54.774 34.32 1 6493700 3665 4192 2514 2562 4150 4150 741 -0.022662144001287743 AYAMRQYFL 9 Oxidation (M) _AYAM(Oxidation (M))RQYFL_ AYAM(1)RQYFL AYAM(55)RQYFL 0 0 1 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7872924804688 2 589.786784 1177.55902 0.7583 0.00044724 0.53355 0.00031468 1.2918 0.00076192 589.787324558277 54.807 0.40486 48.942 48.729 49.134 -5.8653 36 24 2 0 0 0 0.031062 1 34792 34792 54.774 33.027 1 17937000 3666 4192 2514 2562 4151 4151 741 -0.022662144001287743 AYAPPPHVI 9 Unmodified _AYAPPPHVI_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7661743164062 2 482.766178 963.517802 0.028144 1.3587E-05 0.4921 0.00023757 0.52024 0.00025116 482.76635383222987 40.39 0.72836 40.39 40.03 40.758 0 120 37 4 0 0 0 0.028712 4 21565 21565;21667;21771;21892 56.048 42.54 1 75997000 3667 4064 2515 2563 4152;4153;4154;4155 4152 0.03458392622712836 AYAPPPHVI 9 Unmodified _AYAPPPHVI_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7662353515625 2 482.766178 963.517802 0.58022 0.00028011 0.05234 2.5268E-05 0.63256 0.00030538 482.7661936188565 40.846 0.75257 40.543 40.193 40.946 -0.30304 112 36 4 0 0 0 0.047696 3 21499 21499;21603;21718 45.75 32.242 1 46719000 3668 4064 2515 2563 4156;4157;4158 4156 0.03458392622712836 AYAPPPHVI 9 Unmodified _AYAPPPHVI_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.7662658691406 2 482.766178 963.517802 0.54056 0.00026096 0.072741 3.5117E-05 0.6133 0.00029608 482.76626019569886 40.446 0.43973 40.451 40.256 40.695 0.0050545 35 20 3 0 0 0 0.028712 2 21578 21578;21686 56.048 37.913 1 2862400 3669 4064 2515 2563 4159;4160 4159 0.03458392622712836 AYAPPPHVI 9 Unmodified _AYAPPPHVI_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7667236328125 2 482.766178 963.517802 0.76409 0.00036888 0.35945 0.00017353 1.1235 0.00054241 482.7663213271831 45.661 0.85057 40.706 40.311 41.162 -4.9549 184 57 4 0 0 0 0.028712 4 28145 27863;28002;28145;28289 56.048 37.913 1 441950000 3670 4064 2515 2563 4161;4162;4163;4164 4163 0.03458392622712836 AYAQAEQNTI 10 Unmodified _AYAQAEQNTI_ 0 0 0 REV__nc|ENSG00000111540|P61020-2|RAB5B REV__nc|ENSG00000111540|P61020-2|RAB5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2674560546875 2 554.767103 1107.51965 0.56507 0.00031348 2.0162 0.0011185 2.5813 0.001432 555.2686062314926 59.141 0.36031 59.141 58.924 59.285 0 37 15 4 0 0 0 0.5905 1 32892 32892 11.64 3.047 1 3922500 + 3671 29570 2516 2564 4165 4165 -0.02980643149999196 AYAQAIRER 9 Unmodified _AYAQAIRER_ 0 0 0 nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1 nc|ENSG00000157212|Q6ZW49-1|PAXIP1 nc|ENSG00000157212|Q6ZW49-1|PAXIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7679443359375 2 539.293622 1076.57269 0.0015146 8.1683E-07 1.2007 0.00064754 1.2022 0.00064835 539.2945150234018 70.576 0.25952 70.576 70.402 70.661 0 16 10 2 0 0 0 0.20528 1 39312 39312 8.5933 1.304 1 621800 3672 13608 2517 2565 4166 4166 0.03746779423318003 AYAQEIQKL 9 Unmodified _AYAQEIQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.29296875 2 532.292756 1062.57096 0.38454 0.00020469 -0.61621 -0.00032801 -0.23167 -0.00012332 532.2924380054998 39.497 0.3404 39.497 39.321 39.661 0 40 15 4 0 0 0 0.0085366 1 21142 21142 111.29 67.515 1 26325000 3673 7282 2518 2566 4167 4167 0.04217725614716983 AYAQEIQKL 9 Unmodified _AYAQEIQKL_ 0 0 0 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 ENSG00000165030|ENST00000297689|NFIL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2935180664062 2 532.292756 1062.57096 0.58508 0.00031143 -0.23517 -0.00012518 0.34991 0.00018625 532.2927229730435 44.586 0.4882 39.734 39.471 39.959 -4.852 68 38 2 0 0 0 0.026499 2 27183 27183;27298 71.922 47.248 1 41780000 3674 7282 2518 2566 4168;4169 4168 0.04217725614716983 AYAQLAYLVF 10 Unmodified _AYAQLAYLVF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;ENST00000511337.5_1_4:88973244-88983097:+|nuORF nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.81640625 2 579.813325 1157.6121 4.2056 0.0024385 -0.51506 -0.00029864 3.6905 0.0021398 579.8128808489292 99.397 0.16123 99.362 99.267 99.429 -0.03508 14 5 4 0 0 0 0.10406 1 55210 55210 64.236 31.931 1 9079600 3675 3392 2519 2567 4170 4170 0.039594866541847296 AYAQLAYLVF 10 Unmodified _AYAQLAYLVF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;ENST00000511337.5_1_4:88973244-88983097:+|nuORF nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8145141601562 2 579.813325 1157.6121 1.6544 0.00095921 0.42571 0.00024683 2.0801 0.001206 579.8137846784321 100.91 0.14629 94.73 94.651 94.798 -6.1757 18 8 3 0 0 0 0.06987 1 67589 67589 74.423 45.936 1 50700000 3676 3392 2519 2567 4171 4171 0.039594866541847296 AYAQQLTEW 9 Unmodified _AYAQQLTEW_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.265380859375 2 555.266739 1108.51892 0.54723 0.00030386 0.4018 0.0002231 0.94902 0.00052696 555.2665680390708 66.681 0.4149 60.506 60.315 60.73 -6.1757 42 23 2 0 0 0 0.023164 1 43371 43371 60.39 29.753 1 20825000 3677 1782 2520 2568 4172 4172 -0.03099437799073712 AYARIGNSYF 10 Unmodified _AYARIGNSYF_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2860107421875 2 581.288005 1160.56146 0.29563 0.00017185 -1.4694 -0.00085416 -1.1738 -0.00068231 581.2867753872468 48.72 0.26147 48.348 48.219 48.48 -0.37172 26 14 2 0 0 0 0.0023019 1 26130 26130 106.94 72.538 1 14504000 3678 7765 2521 2569 4173 4173 -0.012400426707927181 AYARIGNSYF 10 Unmodified _AYARIGNSYF_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2884521484375 2 581.288005 1160.56146 0.82265 0.0004782 -0.54427 -0.00031638 0.27837 0.00016182 581.2876075513498 48.394 0.27679 48.35 48.218 48.495 -0.04369 33 13 3 0 0 0 0.018732 1 26074 26074 76.825 49.196 1 20058000 3679 7765 2521 2569 4174 4174 -0.012400426707927181 AYARIGNSYF 10 Unmodified _AYARIGNSYF_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2894287109375 2 581.288005 1160.56146 1.224 0.0007115 -0.72253 -0.00042 0.50147 0.0002915 581.2880293677434 53.911 0.59622 48.046 47.77 48.366 -5.8653 94 35 3 0 0 0 0.01074 2 33988 33988;34118 86.332 44.492 1 91464000 3680 7765 2521 2569 4175;4176 4175 -0.012400426707927181 AYARIPAHQVL 11 Unmodified _AYARIPAHQVL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5716552734375 3 413.571657 1237.69314 -0.34022 -0.0001407 0.14668 6.0664E-05 -0.19354 -8.0041E-05 413.57169789204966 36.801 0.21645 36.552 36.45 36.667 -0.2497 15 9 2 0 0 0 0.23097 1 19336 19336 30.431 15.474 1 4060900 3681 5021 2522 2570 4177 4177 0.08380187416923945 AYARIPAHQVL 11 Unmodified _AYARIPAHQVL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5715942382812 3 413.571657 1237.69314 -0.38924 -0.00016098 -0.38964 -0.00016115 -0.77888 -0.00032212 413.57140540884757 36.463 0.18704 36.485 36.372 36.559 0.021545 13 8 2 0 0 0 0.50268 1 19321 19321 16.275 6.5103 1 4233200 3682 5021 2522 2570 4178 4178 0.08380187416923945 AYARIPAHQVL 11 Unmodified _AYARIPAHQVL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5718994140625 3 413.571657 1237.69314 0.86667 0.00035843 0.14393 5.9525E-05 1.0106 0.00041795 413.9059411356801 41.198 0.3018 36.59 36.401 36.703 -4.6079 45 18 3 0 0 0 0.12206 1 24697 24697 39.923 26.404 1 19735000 3683 5021 2522 2570 4179 4179 0.08380187416923945 AYASFIDAF 9 Unmodified _AYASFIDAF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7407836914062 2 502.739825 1003.4651 1.1626 0.00058448 1.1094 0.00055774 2.272 0.0011422 502.74020842677413 93.992 0.84665 87.816 87.469 88.315 -6.1757 119 49 3 0 0 0 0.068777 1 62393 62393 40.449 27.917 1 18607000 3684 7082 2523 2571 4180 4180 -0.03649610230752387 AYASGQDRGET 11 Unmodified _AYASGQDRGET_ 0 0 0 REV__nc|ENSG00000103855|Q5ZPR3-3|CD276 REV__nc|ENSG00000103855|Q5ZPR3-3|CD276 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.50732421875 3 385.50727 1153.49998 0.44615 0.00017199 -0.2298 -8.859E-05 0.21635 8.3403E-05 385.50715660414374 90.868 0.50102 90.373 90.162 90.663 -0.49457 113 33 4 0 0 0 0.66968 1 49607 49607 3.5927 3.5927 1 20096000 + 3685 18326 2524 2572 4181 4181 -0.07063019160773365 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1873779296875 3 361.187032 1080.53927 0.27049 9.7697E-05 0.11119 4.0159E-05 0.38167 0.00013786 361.18703202972785 41.03 0.34669 40.727 40.563 40.909 -0.30304 59 16 5 0 0 0 0.06294 2 21764 21662;21764 38.615 25.742 1 57743000 3686 16120 2525 2573 4182;4183 4183 0.0022177765142714634 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2769165039062 2 541.276909 1080.53927 0.1184 6.4086E-05 0.012396 6.7098E-06 0.13079 7.0796E-05 541.2768751615038 41.022 0.26204 40.719 40.601 40.863 -0.30304 23 12 2 0 0 0 0.008513 1 21686 21686 99.755 67.45 1 5708900 3687 16120 2525 2573 4184 4184 0.0022177765142714634 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.1868286132812 3 361.187032 1080.53927 0.35334 0.00012762 -0.7521 -0.00027165 -0.39876 -0.00014403 361.1867582984125 40.682 0.7588 40.687 40.509 41.267 0.0050545 114 36 6 0 0 0 0.070838 3 21752 21646;21752;21860 29.841 23.117 1 1201100000 3688 16120 2525 2573 4185;4186;4187 4186 0.0022177765142714634 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2776489257812 2 541.276909 1080.53927 0.4339 0.00023486 -0.61417 -0.00033244 -0.18028 -9.758E-05 541.2765570111978 40.68 0.36897 40.685 40.529 40.898 0.0050545 63 17 5 0 0 0 0.00065891 2 21660 21660;21764 142.08 105.95 1 183620000 3689 16120 2525 2573 4188;4189 4188 0.0022177765142714634 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1872253417969 3 361.187032 1080.53927 1.2737 0.00046003 -0.20294 -7.3299E-05 1.0707 0.00038673 361.18682952415696 44.591 1.2796 39.739 39.406 40.685 -4.852 320 93 5 0 0 0 0.08691 7 27300 27038;27172;27300;27433;27580;27727;27931 40.239 32.084 1 1807199999.9999998 3690 16120 2525 2573 4190;4191;4192;4193;4194;4195;4196 4192 0.0022177765142714634 AYATHPFKF 9 Unmodified _AYATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2766723632812 2 541.276909 1080.53927 0.46859 0.00025364 -0.066275 -3.5873E-05 0.40232 0.00021777 541.276808461175 44.598 0.9011 39.746 39.425 40.326 -4.852 213 66 4 0 0 0 0.0090524 5 27079 27079;27210;27335;27471;27619 85.642 57.13 1 638220000 3691 16120 2525 2573 4197;4198;4199;4200;4201 4197 0.0022177765142714634 AYAVCAICSF 10 Unmodified _AYAVCAICSF_ 0 0 0 REV__ENSG00000179820|ENST00000391770|MYADM REV__ENSG00000179820|ENST00000391770|MYADM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.235595703125 2 524.235538 1046.45652 0.58352 0.0003059 0.4055 0.00021258 0.98901 0.00051848 524.2358791772743 75.607 0.25471 75.13 74.98 75.235 -0.47714 20 12 2 0 0 0 0.65502 1 41357 41357 7.9102 0 1 899710 + 3692 23120 2526 2574 4202 4202 -0.06484623463234129 AYCERAMMRF 10 Unmodified _AYCERAMMRF_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5242004394531 3 426.524444 1276.5515 0.3817 0.0001628 -0.53176 -0.00022681 -0.15006 -6.4004E-05 426.5242715850052 23.667 0.40322 20.84 20.669 21.073 -2.8273 38 24 2 0 0 0 0.6966 1 12916 12916 1.5923 0 1 5024500 3693 9138 2527 2575 4203 4203 -0.07571013263714121 AYCGSDTRF 9 Unmodified _AYCGSDTRF_ 0 0 0 REV__ENSG00000070778|ENST00000556564|PTPN21 REV__ENSG00000070778|ENST00000556564|PTPN21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2983703613281 2 510.216192 1018.41783 0.65324 0.0003333 0.78375 0.00039988 1.437 0.00073318 510.2171279721321 66.114 0.3438 59.938 59.773 60.117 -6.1757 50 19 3 0 0 0 0.20528 1 43071 43071 8.5933 2.2392 1 20550000 + 3694 17482 2528 2576 4204 4204 -0.09064212773398594 AYCHIAHSL 9 Carbamidomethyl (C) _AYC(Carbamidomethyl (C))HIAHSL_ AYC(1)HIAHSL AYC(52)HIAHSL 0 1 0 ENSG00000135315|ENST00000403245|CEP162;nc|ENSG00000135315|Q5TB80-2|CEP162;ENST00000497936.5_1_6:84884653-84936120:-|nuORF ENSG00000135315|ENST00000403245|CEP162 ENSG00000135315|ENST00000403245|CEP162 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.83984375 3 357.839526 1070.49675 1.281 0.0004584 0.12868 4.6045E-05 1.4097 0.00050445 358.1737954186256 28.313 0.3746 25.165 24.983 25.358 -3.1482 38 19 3 0 0 0 0.036857 1 15738 15738 51.63 35.783 1 13020000 3695 4686 2529 2577 4205 4205 479 -0.035679407484849435 AYCLKYEKF 9 Carbamidomethyl (C) _AYC(Carbamidomethyl (C))LKYEKF_ AYC(1)LKYEKF AYC(120)LKYEKF 0 1 0 nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3 nc|ENSG00000115239|Q9Y575-2|ASB3 nc|ENSG00000115239|Q9Y575-2|ASB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.3025512695312 2 611.302267 1220.58998 0.57098 0.00034904 0.46288 0.00028296 1.0339 0.000632 611.3030103004169 43.776 0.4946 39.011 38.808 39.302 -4.7648 67 31 3 0 0 0 0.0048194 2 26718 26578;26718 117.76 64.357 1 43318000 3696 3101 2530 2578 4206;4207 4207 320 -0.011490610859027584 AYCLRFLVL 9 Carbamidomethyl (C) _AYC(Carbamidomethyl (C))LRFLVL_ AYC(1)LRFLVL AYC(71)LRFLVL 0 1 0 nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1;ENSG00000132530|ENST00000361842|XAF1;ENST00000573760.1_1_17:6659397-6661657:+|nuORF;nc|ENSG00000132530|Q6GPH4-4|XAF1;nc|ENSG00000132530|Q6GPH4-3|XAF1;nc|ENSG00000132530|Q6GPH4-5|XAF1 nc|ENSG00000132530|Q6GPH4-2|XAF1 nc|ENSG00000132530|Q6GPH4-2|XAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.823486328125 2 577.823169 1153.63179 0.96475 0.00055745 -0.46735 -0.00027004 0.4974 0.00028741 577.8229724721123 99.243 0.13783 93.067 92.99 93.128 -6.1757 19 7 3 0 0 0 0.013323 1 66040 66040 71.134 50.68 1 98099000 3697 4419 2531 2579 4208 4208 458 0.06111539393282328 AYCPNDYHQLF 11 Carbamidomethyl (C) _AYC(Carbamidomethyl (C))PNDYHQLF_ AYC(1)PNDYHQLF AYC(97)PNDYHQLF 0 1 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 714.3074340820312 2 714.306069 1426.59759 0.7142 0.00051016 -0.68023 -0.00048589 0.033967 2.4263E-05 714.8071989709159 60.185 0.45611 54.071 53.834 54.29 -6.1147 60 23 3 0 0 0 4.2801E-06 2 38643 38643;38776 96.936 74.199 1 63898000 3698 2691 2532 2580 4209;4210 4209 273 -0.0986495355630268 AYCRHIPSY 9 Unmodified _AYCRHIPSY_ 0 0 0 REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3 REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2107543945312 2 555.263476 1108.5124 0.6827 0.00037908 4.4809 0.0024881 5.1636 0.0028672 555.2658662884279 55.569 0.31109 55.091 54.861 55.173 -0.47798 20 14 2 0 0 0 0.19298 1 30062 30062 8.5933 4.6489 1 1741600 + 3699 18500 2533 2581 4211 4211 -0.03751654231405155 AYCTRAKIHI 10 Unmodified _AYCTRAKIHI_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7854614257812 2 588.321325 1174.6281 1.3694 0.00080565 -3.6511 -0.002148 -2.2817 -0.0013424 588.8211941124233 49.998 0.21959 49.949 49.827 50.046 -0.048828 22 10 4 0 0 0 0.65502 1 27024 27024 7.9102 2.6795 1 1823700 3700 339 2534 2582 4212 4212 0.04776869619445279 AYDAIGELF 9 Unmodified _AYDAIGELF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.48046875 1 998.482939 997.475663 -0.064438 -6.434E-05 0.37119 0.00037062 0.30675 0.00030628 998.4830228078275 83.272 0.18667 83.272 83.178 83.365 0 14 8 2 0 0 0 0.49272 1 46153 46153 7.9102 0 1 677120 3701 8795 2535 2583 4213 4213 -0.02317627576326231 AYDAIGELF 9 Unmodified _AYDAIGELF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2500305175781 2 499.745108 997.475663 0.34291 0.00017137 0.50829 0.00025401 0.85119 0.00042538 499.745221016018 83.264 0.26795 83.264 83.163 83.431 0 18 13 2 0 0 0 0.19613 1 46151 46151 12.532 6.1774 1 682350 3702 8795 2535 2583 4214 4214 -0.02317627576326231 AYDAIGELF 9 Unmodified _AYDAIGELF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7456970214844 2 499.745108 997.475663 0.33438 0.0001671 1.1892 0.00059427 1.5235 0.00076138 499.74554660623767 83.794 0.22019 83.295 83.172 83.392 -0.49961 13 8 2 0 0 0 0.39863 1 45872 45872 12.532 3.1841 1 407170 3703 8795 2535 2583 4215 4215 -0.02317627576326231 AYDDKIYYF 9 Unmodified _AYDDKIYYF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2774658203125 2 599.276772 1196.53899 -0.020296 -1.2163E-05 2.2683 0.0013593 2.248 0.0013472 599.2766159884228 58.706 0.48802 58.706 58.414 58.902 0 68 20 4 0 0 0 0.047788 1 32670 32670 45.7 19.431 1 22927000 3704 5073 2536 2584 4216 4216 -0.0514168685911045 AYDDKIYYF 9 Unmodified _AYDDKIYYF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2764282226562 2 599.276772 1196.53899 0.34221 0.00020508 0.28008 0.00016784 0.62228 0.00037292 599.2759118087813 59.251 0.41151 58.76 58.556 58.968 -0.49079 47 18 4 0 0 0 0.078314 2 32270 32172;32270 38.176 9.094 1 11946000 3705 5073 2536 2584 4217;4218 4218 -0.0514168685911045 AYDDKIYYF 9 Unmodified _AYDDKIYYF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.277099609375 2 599.276772 1196.53899 NaN NaN NaN NaN NaN NaN NaN 93.058 1 92.6 92.1 93.1 -0.4574 0 0 0 0.84369 1 50859 50859 2.3027 0 1 3706 5073 2536 2584 4219 4219 -0.0514168685911045 AYDDKIYYF 9 Unmodified _AYDDKIYYF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MSMS AL20221201_MKP_PDAC_01 4 599.2772216796875 2 599.276772 1196.53899 NaN NaN NaN NaN NaN NaN NaN 65.129 1 58.954 58.454 59.454 -6.1757 0 0 0 0.059498 1 42252 42252 53.833 17.706 1 3707 5073 2536 2584 4220 4220 -0.0514168685911045 AYDEHQTLL 9 Unmodified _AYDEHQTLL_ 0 0 0 ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF ENSG00000185246|ENST00000355765|PRPF39 ENSG00000185246|ENST00000355765|PRPF39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2636108398438 2 545.264196 1088.51384 0.43701 0.00023828 0.22247 0.0001213 0.65947 0.00035959 545.2644716903498 39.119 0.29245 39.119 38.97 39.263 0 19 13 2 0 0 0 0.12424 1 20939 20939 30.637 1.555 1 2756000 3708 9350 2537 2585 4221 4221 -0.02687741661657128 AYDHSYVELF 10 Unmodified _AYDHSYVELF_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2859497070312 2 622.285128 1242.5557 0.29603 0.00018421 1.4734 0.00091685 1.7694 0.0011011 622.2859958037157 78.098 0.54437 78.098 77.965 78.509 0 47 24 3 0 0 0 0.69377 1 43437 43437 3.5965 1.5367 1 550260 3709 3981 2538 2586 4222 4222 -0.05587185973149644 AYDIDSTTLK 10 Unmodified _AYDIDSTTLK_ 0 0 0 REV__nc|ENSG00000106290|P49848-4|TAF6 REV__nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.73828125 2 563.784961 1125.55537 0.95163 0.00053652 0.44352 0.00025005 1.3952 0.00078657 563.7847398301001 54.331 0.28869 54.331 54.173 54.462 0 27 12 3 0 0 0 0.23227 1 30235 30235 6.7232 0 1 2754900 + 3710 18497 2539 2587 4223 4223 -0.0023860569301632495 AYDKAVASF 9 Unmodified _AYDKAVASF_ 0 0 0 nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2454833984375 2 486.245275 970.475997 NaN NaN NaN NaN NaN NaN NaN 36.488 1 36.488 35.988 36.988 0 0 0 0 0.028685 1 19359 19359 67.838 29.864 1 3711 8179 2540 2588 4224 4224 -0.010422078564715775 AYDKAVASF 9 Unmodified _AYDKAVASF_ 0 0 0 nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 MSMS AL20221201_MKP_PDAC_01 4 486.2448425292969 2 486.245275 970.475997 NaN NaN NaN NaN NaN NaN NaN 41.443 1 36.835 36.335 37.335 -4.6079 0 0 0 0.050854 1 24887 24887 57.249 21.122 1 3712 8179 2540 2588 4225 4225 -0.010422078564715775 AYDLAKALL 9 Unmodified _AYDLAKALL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B nc|ENSG00000083642|Q9NTI5-3|PDS5B nc|ENSG00000083642|Q9NTI5-3|PDS5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2875671386719 2 489.286943 976.559333 NaN NaN NaN NaN NaN NaN NaN 68.56 1 68.08 67.58 68.58 -0.48071 0 0 0 0.15549 1 37472 37472 36.127 9.2434 1 3713 1369 2541 2589 4226 4226 0.07011528591374372 AYDLNKFLVR 10 Unmodified _AYDLNKFLVR_ 0 0 0 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5672912597656 3 413.567912 1237.68191 -0.30896 -0.00012778 0.00432 1.7866E-06 -0.30464 -0.00012599 413.5678292093261 56.7 0.21374 56.215 56.136 56.349 -0.48554 18 10 2 0 0 0 0.65023 1 30811 30811 8.4443 2.2525 1 4334600 + 3714 29716 2542 2590 4227 4227 0.07257365322789155 AYDNFVEL 8 Unmodified _AYDNFVEL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7305908203125 2 485.729458 969.444362 0.38887 0.00018889 1.6683 0.00081033 2.0572 0.00099922 485.7302572717831 68.396 0.38074 68.396 68.204 68.585 0 26 17 2 0 0 0 0.80232 1 38188 38188 5.2307 0 1 671330 3715 7963 2543 2591 4228 4228 -0.04158200610413587 AYDNYWKSR 9 Unmodified _AYDNYWKSR_ 0 0 0 REV__nc|ENSG00000211933|A0A0B4J1U7|IGHV6-1 REV__nc|ENSG00000211933|A0A0B4J1U7|IGHV6-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7769775390625 2 601.783087 1201.55162 0.39653 0.00023862 -2.3243 -0.0013987 -1.9278 -0.0011601 601.7816943320062 57.815 0.52778 57.326 56.943 57.471 -0.48974 51 25 4 0 0 0 0.19127 1 31323 31323 24.021 3.5669 1 8216100 + 3716 29933 2544 2592 4229 4229 -0.04109230676226616 AYDPEINKL 9 Unmodified _AYDPEINKL_ 0 0 0 ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13 ENSG00000204977|ENST00000378182|TRIM13 ENSG00000204977|ENST00000378182|TRIM13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7777709960938 2 531.776939 1061.53933 NaN NaN NaN NaN NaN NaN NaN 41.469 1 41.469 40.969 41.969 0 0 0 0 0.083082 1 22370 22370 47.749 9.7747 1 3717 10341 2545 2593 4230 4230 0.011017328607522359 AYDPQTNEW 9 Unmodified _AYDPQTNEW_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.238525390625 2 562.238178 1122.4618 0.76467 0.00042993 0.025904 1.4564E-05 0.79058 0.00044449 562.2386293404794 42.459 0.24693 42.459 42.318 42.565 0 18 11 2 0 0 0 0.41742 1 22996 22996 11.64 3.047 1 2783400 3718 2675 2546 2594 4231 4231 -0.09452905075431772 AYDTLPVLI 9 Unmodified _AYDTLPVLI_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7861633300781 2 502.786776 1003.559 NaN NaN NaN NaN NaN NaN NaN 92.021 1 91.54 91.04 92.04 -0.48092 0 0 0 0.40995 1 50301 50301 19.439 1.304 1 3719 1365 2547 2595 4232 4232 0.057361088715197184 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7796020507812 2 593.780013 1185.54547 0.023154 1.3748E-05 -0.77524 -0.00046032 -0.75209 -0.00044657 593.7796277701095 64.525 0.3494 64.525 64.345 64.694 0 52 17 4 0 0 0 0.0085366 2 36042 35942;36042 90.135 57.349 1 11814000 3720 8641 2548 2596 4233;4234 4234 -0.039877489077071004 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7802124023438 2 593.780013 1185.54547 0.42939 0.00025497 0.1469 8.7229E-05 0.5763 0.00034219 593.7800593550973 65.029 0.4754 64.545 64.295 64.77 -0.48428 84 21 5 0 0 0 0.013118 2 35509 35404;35509 71.708 38.922 1 102860000 3721 8641 2548 2596 4235;4236 4236 -0.039877489077071004 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.7814331054688 2 593.780013 1185.54547 0.59651 0.00035419 0.96309 0.00057186 1.5596 0.00092606 593.7807732927857 64.569 0.29305 64.558 64.415 64.708 -0.010529 45 14 4 0 0 0 0.026499 2 35330 35330;35432 57.249 24.463 1 16144000 3722 8641 2548 2596 4237;4238 4237 -0.039877489077071004 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7800903320312 2 593.780013 1185.54547 0.42748 0.00025383 0.29731 0.00017654 0.72479 0.00043037 593.7801273113287 69.624 0.84254 63.448 63.071 63.914 -6.1757 119 45 4 0 0 0 0.0082981 4 45329 45329;45446;45568;45728 96.936 49.187 1 322490000 3723 8641 2548 2596 4239;4240;4241;4242 4239 -0.039877489077071004 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7800903320312 2 593.780013 1185.54547 0.64888 0.00038529 -0.014823 -8.8015E-06 0.63406 0.00037649 593.7797192996214 70.348 0.51285 64.172 63.914 64.427 -6.1757 48 28 2 0 0 0 0.0088668 2 45923 45923;46058 87.258 52.856 1 37076000 3724 8641 2548 2596 4243;4244 4243 -0.039877489077071004 AYDTVRWEF 9 Unmodified _AYDTVRWEF_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000482088.5_1_9:140007335-140007673:-|nuORF;ENST00000460830.1_1_9:140006993-140007673:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7802124023438 2 593.780013 1185.54547 0.85137 0.00050553 -0.081395 -4.8331E-05 0.76998 0.0004572 593.7800183737352 71.304 0.79858 65.128 64.663 65.462 -6.1757 94 39 3 0 0 0 0.0099157 3 46417 46417;46532;46651 80.676 46.274 1 64989000 3725 8641 2548 2596 4245;4246;4247 4245 -0.039877489077071004 AYDVLFHQW 9 Unmodified _AYDVLFHQW_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7870483398438 2 589.785099 1177.55564 0.59647 0.00035179 -1.5653 -0.00092322 -0.96888 -0.00057143 589.7837724249371 72.43 0.3299 71.954 71.772 72.102 -0.47609 53 15 5 0 0 0 0.022193 1 39584 39584 61.357 37.337 1 9123500 3726 8857 2549 2597 4248 4248 -0.026031411824760653 AYDVLFHQW 9 Unmodified _AYDVLFHQW_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7852783203125 2 589.785099 1177.55564 0.53303 0.00031438 -1.2986 -0.00076592 -0.7656 -0.00045154 589.784165290585 71.857 0.40224 71.896 71.727 72.129 0.039024 57 19 4 0 0 0 0.013323 1 39534 39534 71.134 47.113 1 13443000 3727 8857 2549 2597 4249 4249 -0.026031411824760653 AYDVLFHQW 9 Unmodified _AYDVLFHQW_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7850341796875 2 589.785099 1177.55564 0.76047 0.00044851 -1.2726 -0.00075059 -0.51218 -0.00030208 589.7839576367411 83.136 1.3229 76.961 76.339 77.662 -6.1757 160 72 3 0 0 0 0.0090524 4 54688 54388;54540;54688;54818 85.642 61.251 1 31034000 3728 8857 2549 2597 4250;4251;4252;4253 4252 -0.026031411824760653 AYEHKFYEI 9 Unmodified _AYEHKFYEI_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8647766113281 3 400.529235 1198.56587 0.78492 0.00031438 0.35125 0.00014069 1.1362 0.00045507 400.5292809246041 43.575 0.45454 38.81 38.595 39.05 -4.7648 83 28 4 0 0 0 0.42049 1 26438 26438 11.495 1.3441 1 50270000 3729 2180 2550 2598 4254 4254 -0.025465782478931942 AYEHKFYEI 9 Unmodified _AYEHKFYEI_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2908325195312 2 600.290214 1198.56587 0.020209 1.2131E-05 0.53274 0.0003198 0.55295 0.00033193 600.2904741578011 43.606 0.56099 38.841 38.505 39.066 -4.7648 69 36 3 0 0 0 0.047194 1 26580 26580 41.956 9.1699 1 14513000 3730 2180 2550 2598 4255 4255 -0.025465782478931942 AYEIIDQFF 9 Unmodified _AYEIIDQFF_ 0 0 0 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2798461914062 2 573.279315 1144.54408 0.37846 0.00021696 0.69717 0.00039967 1.0756 0.00061664 573.2796732750045 96.612 0.41123 96.612 96.445 96.856 0 52 25 3 0 0 0 0.48152 1 53423 53423 8.5933 1.304 1 694050 3731 9475 2551 2599 4256 4256 -0.022413829964762044 AYEIIDQFF 9 Unmodified _AYEIIDQFF_ 0 0 0 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.280029296875 2 573.279315 1144.54408 0.52505 0.000301 0.096181 5.5138E-05 0.62123 0.00035614 573.279214537299 97.031 0.36124 96.733 96.563 96.924 -0.29715 51 19 4 0 0 0 0.078417 2 53012 52914;53012 38.151 20.016 1 3818700 3732 9475 2551 2599 4257;4258 4258 -0.022413829964762044 AYEIIDQFF 9 Unmodified _AYEIIDQFF_ 0 0 0 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2813110351562 2 573.279315 1144.54408 2.383 0.0013661 0.1995 0.00011437 2.5825 0.0014805 573.2793290698338 96.651 0.32365 96.644 96.475 96.799 -0.0070114 25 11 3 0 0 0 0.070838 1 53648 53648 39.957 20.7 1 3709700 3733 9475 2551 2599 4259 4259 -0.022413829964762044 AYEKFFLLL 9 Unmodified _AYEKFFLLL_ 0 0 0 ENSG00000198121|ENST00000683809|LPAR1;nc|ENSG00000198121|Q92633-2|LPAR1 ENSG00000198121|ENST00000683809|LPAR1 ENSG00000198121|ENST00000683809|LPAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.32568359375 2 572.326068 1142.63758 2.1681 0.0012408 0.00035007 2.0035E-07 2.1684 0.001241 572.3255564988683 95.765 0.35278 95.769 95.624 95.977 0.0041504 28 12 3 0 0 0 0.044042 1 53195 53195 60.074 23.947 1 5214100 3734 10053 2552 2600 4260 4260 0.07196961176623518 AYEKWREW 8 Unmodified _AYEKWREW_ 0 0 0 nc|ENSG00000113657|Q14195|DPYSL3;ENSG00000113657|ENST00000343218|DPYSL3 nc|ENSG00000113657|Q14195|DPYSL3 nc|ENSG00000113657|Q14195|DPYSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2879028320312 2 584.282723 1166.55089 0.090383 5.2809E-05 -0.34379 -0.00020087 -0.2534 -0.00014806 584.2824466953153 69.747 0.52483 69.747 69.444 69.969 0 74 25 4 0 0 0 0.78031 1 38739 38739 13.508 4.9146 1 14419000 3735 2989 2553 2601 4261 4261 -0.0257202532525298 AYELNSVQH 9 Unmodified _AYELNSVQH_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7577514648438 2 530.756538 1059.49852 NaN NaN NaN NaN NaN NaN NaN 28.473 1 28.503 28.003 29.003 0.029564 0 0 0 0.50124 1 14826 14826 15.847 2.3393 1 3736 10934 2554 2602 4262 4262 -0.028846084588622034 AYELTQYYF 9 Unmodified _AYELTQYYF_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2760009765625 2 599.276772 1196.53899 -0.020296 -1.2163E-05 2.2683 0.0013593 2.248 0.0013472 599.2766159884228 58.706 0.48802 58.706 58.414 58.902 0 68 20 4 0 0 0 0.39863 1 32773 32773 12.532 0 1 22927000 3737 7103 2555 2603 4263 4263 -0.05141686859087713 AYELTQYYF 9 Unmodified _AYELTQYYF_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2776489257812 2 599.276772 1196.53899 -0.014155 -8.4827E-06 1.8702 0.0011207 1.856 0.0011123 599.2781345099346 76.45 0.24767 76.45 76.341 76.589 0 18 9 2 0 0 0 0.37804 1 42503 42503 13.508 4.1604 1 637910 3738 7103 2555 2603 4264 4264 -0.05141686859087713 AYELTQYYF 9 Unmodified _AYELTQYYF_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2769775390625 2 599.276772 1196.53899 -0.24649 -0.00014772 1.1221 0.00067245 0.87561 0.00052473 599.2774867312563 76.982 0.40113 76.502 76.3 76.701 -0.47945 43 17 3 0 0 0 0.10734 2 42109 42109;42209 32.305 10.559 1 4362400 3739 7103 2555 2603 4265;4266 4265 -0.05141686859087713 AYELTQYYF 9 Unmodified _AYELTQYYF_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7793579101562 2 599.276772 1196.53899 0.09886 5.9245E-05 0.4036 0.00024187 0.50247 0.00030112 599.2771875737054 84.241 0.48137 78.065 77.837 78.318 -6.1757 44 26 2 0 0 0 0.031062 2 55355 55355;55485 54.774 26.287 1 21052000 3740 7103 2555 2603 4267;4268 4267 -0.05141686859087713 AYERFTGNQI 10 Unmodified _AYERFTGNQI_ 0 0 0 nc|ENSG00000093217|O75191-2|XYLB;ENSG00000093217|ENST00000207870|XYLB nc|ENSG00000093217|O75191-2|XYLB nc|ENSG00000093217|O75191-2|XYLB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 399.8815307617188 3 400.199889 1197.57784 1.9917 0.00079707 2.0647 0.00082628 4.0563 0.0016233 400.2001534769819 41.748 0.061253 37.14 37.112 37.173 -4.6079 5 3 2 0 0 0 0.23609 1 25110 25110 3.0723 0.33707 1 2272700 3741 1634 2556 2604 4269 4269 -0.01304961504683888 AYEWFEEWQ 9 Unmodified _AYEWFEEWQ_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.2645263671875 2 644.269478 1286.5244 0.070016 4.5109E-05 -2.6503 -0.0017075 -2.5803 -0.0016624 644.2656179395951 78.893 0.31487 78.407 78.238 78.553 -0.48596 23 12 2 0 0 0 0.58466 1 43219 43219 2.3027 0.4585 1 1077300 3742 663 2557 2605 4270 4270 -0.10739759007242355 AYFDAASEI 9 Unmodified _AYFDAASEI_ 0 0 0 ENSG00000177076|ENST00000340967|ACER2;nc|ENSG00000177076|Q5QJU3-2|ACER2 ENSG00000177076|ENST00000340967|ACER2 ENSG00000177076|ENST00000340967|ACER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.445556640625 1 986.446553 985.439277 0.08051 7.9419E-05 1.1245 0.0011092 1.205 0.0011887 986.4475095093155 58.499 0.28687 58.499 58.39 58.677 0 27 11 3 0 0 0 0.28047 2 32549 32549;32654 18.135 1.1927 1 4642100 3743 8654 2558 2606 4271;4272 4271 -0.054025044730451555 AYFDFPEL 8 Unmodified _AYFDFPEL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2345275878906 2 501.234376 1000.4542 0.96655 0.00048447 -0.67306 -0.00033736 0.29349 0.00014711 501.23378637982404 99.962 0.15567 93.786 93.715 93.87 -6.1757 14 10 2 0 0 0 0.44122 1 66745 66745 40.449 15.775 1 32987000 3744 8967 2559 2607 4273 4273 -0.04601012605053256 AYFDFPELL 9 Unmodified _AYFDFPELL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7763671875 2 557.776408 1113.53826 0.42487 0.00023698 -0.011722 -6.5383E-06 0.41315 0.00023044 557.7761564008122 100.61 0.10813 100.61 100.56 100.67 0 9 3 4 0 0 0 0.087258 1 55534 55534 36.044 19.102 1 4985000 3745 8967 2560 2608 4274 4274 -0.013964815081408233 AYFDFPELL 9 Unmodified _AYFDFPELL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.777099609375 2 557.776408 1113.53826 0.52602 0.0002934 -0.44823 -0.00025001 0.077786 4.3387E-05 557.7760774946449 100.68 0.19496 100.55 100.46 100.66 -0.13293 22 7 5 0 0 0 0.026094 1 54946 54946 57.471 34.735 1 69639000 3746 8967 2560 2608 4275 4275 -0.013964815081408233 AYFDFPELL 9 Unmodified _AYFDFPELL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7766723632812 2 557.776408 1113.53826 1.1618 0.00064803 -1.1582 -0.00064603 0.0035701 1.9913E-06 557.7756994435629 100.63 0.14753 100.59 100.51 100.65 -0.04216 18 5 5 0 0 0 0.026094 1 55899 55899 57.471 15.377 1 81669000 3747 8967 2560 2608 4276 4276 -0.013964815081408233 AYFDFPELL 9 Unmodified _AYFDFPELL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7772827148438 2 557.776408 1113.53826 1.0781 0.00060132 -0.40679 -0.0002269 0.67128 0.00037442 557.7760077719554 101.35 0.22937 95.171 95.079 95.309 -6.1757 52 12 6 0 0 0 0.038285 1 67958 67958 50.855 23.971 1 2400800000 3748 8967 2560 2608 4277 4277 -0.013964815081408233 AYFDFPELLSL 11 Unmodified _AYFDFPELLSL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8341674804688 2 657.834454 1313.65436 0.58889 0.00038739 -0.63234 -0.00041598 -0.043447 -2.8581E-05 657.8339313035706 102.06 0.10689 95.889 95.833 95.939 -6.1757 13 4 4 0 0 0 0.064513 1 68507 68507 47.749 22.758 1 25180000 3749 8967 2561 2609 4278 4278 0.010074172719214403 AYFDVLLDKF 10 Unmodified _AYFDVLLDKF_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4;nc|ENSG00000172478|Q08AI8-3|MAB21L4;nc|ENSG00000172478|Q08AI8-2|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MSMS AL20221201_MKP_PDAC_01 4 615.8248901367188 2 615.823889 1229.63323 NaN NaN NaN NaN NaN NaN NaN 99.458 1 93.283 92.783 93.783 -6.1757 0 0 0 0.050349 1 66244 66244 57.249 35.712 1 3750 8225 2562 2610 4279 4279 0.02759451963038373 AYFDVPELI 9 Unmodified _AYFDVPELI_ 0 0 0 nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-4|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7769775390625 2 533.776408 1065.53826 0.32995 0.00017612 -0.10834 -5.7828E-05 0.22161 0.00011829 533.776561700409 95.806 0.34444 95.438 95.273 95.618 -0.36814 47 20 3 0 0 0 0.2001 2 52279 52279;52375 23.148 14.555 1 1151100 3751 3106 2563 2611 4280;4281 4280 0.008115184918551677 AYFDVPELI 9 Unmodified _AYFDVPELI_ 0 0 0 nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-4|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 MSMS AL20221201_MKP_PDAC_01 4 533.77587890625 2 533.776408 1065.53826 NaN NaN NaN NaN NaN NaN NaN 100.26 1 94.083 93.583 94.583 -6.1757 0 0 0 0.13852 1 66998 66998 38.151 24.643 1 3752 3106 2563 2611 4282 4282 0.008115184918551677 AYFDVPELI 9 Unmodified _AYFDVPELI_ 0 0 0 nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;nc|ENSG00000115295|Q8N3C7-4|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.776408 1065.53826 2.1604 0.0011532 1.514 0.00080816 3.6744 0.0019613 533.7769247686244 95.394 0.20998 95.398 95.322 95.532 0.004158 -0.0020297 0.001419 NaN 23.148 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 469570 3753 3106 2563 2611 0.008115184918551677 AYFFSDDEED 10 Unmodified _AYFFSDDEED_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1;ENSG00000162981|ENST00000295092|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.4912109375 3 413.155903 1236.44588 0.41299 0.00017063 2.3547 0.00097286 2.7677 0.0011435 413.4911327076901 48.443 0.17866 48.072 47.983 48.162 -0.37172 11 8 2 0 0 0 0.71123 1 26020 26020 1.9064 0.1641 1 2318500 3754 16324 2564 2612 4283 4283 -0.1628865610300636 AYFFSDDEED 10 Unmodified _AYFFSDDEED_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1;ENSG00000162981|ENST00000295092|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 413.155903 1236.44588 0.41299 0.00017063 2.3547 0.00097286 2.7677 0.0011435 413.4911327076901 48.443 0.17866 48.072 47.983 48.162 -0.37172 -0.031846 6.5462E-05 NaN 1.9064 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2318500 3755 16324 2564 2612 -0.1628865610300636 AYFFSDDEED 10 Unmodified _AYFFSDDEED_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1;ENSG00000162981|ENST00000295092|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.155903 1236.44588 0.23843 9.851E-05 2.1718 0.00089728 2.4102 0.00099579 413.1570925253228 48.174 0.13758 48.135 48.066 48.203 -0.038647 0.031846 -0.00016128 NaN 1.9064 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 721630 3756 16324 2564 2612 -0.1628865610300636 AYFHQAAKL 9 Unmodified _AYFHQAAKL_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38;ENST00000567552.1_1_16:72142380-72142524:+|nuORF ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1910400390625 3 350.190665 1047.55016 1.1649 0.00040794 0.059688 2.0902E-05 1.2246 0.00042884 350.19064700144713 32.939 0.25373 29.083 28.904 29.158 -3.8562 24 14 2 0 0 0 0.1773 1 18802 18802 23.79 4.5328 1 32270000 3757 5271 2565 2613 4284 4284 0.02829180025696587 AYFHQPEAI 9 Unmodified _AYFHQPEAI_ 0 0 0 ENSG00000170430|ENST00000651593|MGMT;ENST00000462672.1_1_10:131506162-131515894:+|nuORF ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2637329101562 2 538.263999 1074.51345 0.88588 0.00047684 0.70107 0.00037736 1.5869 0.0008542 538.7656363923659 42.874 0.26896 42.874 42.737 43.006 0 31 13 4 0 0 0 0.07916 1 23218 23218 37.974 18.717 1 11605000 3758 7984 2566 2614 4285 4285 -0.020831165908703042 AYFHQPEAI 9 Unmodified _AYFHQPEAI_ 0 0 0 ENSG00000170430|ENST00000651593|MGMT;ENST00000462672.1_1_10:131506162-131515894:+|nuORF ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2646484375 2 538.263999 1074.51345 0.93625 0.00050395 -0.52975 -0.00028515 0.4065 0.00021881 538.2637834191945 48.411 0.28507 43.177 43.033 43.318 -5.2339 35 16 3 0 0 0 0.024882 1 30139 30139 58.679 31.795 1 23725000 3759 7984 2566 2614 4286 4286 -0.020831165908703042 AYFKIGFYL 9 Unmodified _AYFKIGFYL_ 0 0 0 REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.305908203125 2 561.305136 1120.59572 NaN NaN NaN NaN NaN NaN NaN 40.087 1 39.79 39.29 40.29 -0.29716 0 0 0 0.57317 1 21175 21175 13.508 2.3934 1 + 3760 19675 2567 2615 4287 4287 0.040244054880758995 AYFKIGFYL 9 Unmodified _AYFKIGFYL_ 0 0 0 REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.769775390625 2 561.305136 1120.59572 0.63022 0.00035374 -2.3111 -0.0012972 -1.6809 -0.00094347 561.3056695432879 67.352 0.10866 66.87 66.78 66.889 -0.48219 6 4 2 0 0 0 0.21242 1 36759 36759 5.2307 0 1 485380 + 3761 19675 2567 2615 4288 4288 0.040244054880758995 AYFKQSSVF 9 Unmodified _AYFKQSSVF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.773681640625 2 538.7742 1075.53385 0.55196 0.00029738 0.68424 0.00036865 1.2362 0.00066603 538.7749373472842 47.121 0.29572 46.784 46.72 47.016 -0.33664 16 14 2 0 0 0 0.35911 1 25282 25282 20.454 7.9221 1 2529200 3762 7797 2568 2616 4289 4289 -0.0008994593106308457 AYFKQSSVF 9 Unmodified _AYFKQSSVF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7742309570312 2 538.7742 1075.53385 1.2516 0.00067434 -0.36245 -0.00019528 0.88917 0.00047906 538.7739498245779 46.87 0.24371 46.837 46.712 46.956 -0.033417 19 11 2 0 0 0 0.076472 1 25213 25213 49.933 31.787 1 2765100 3763 7797 2568 2616 4290 4290 -0.0008994593106308457 AYFNDSQFQV 10 Unmodified _AYFNDSQFQV_ 0 0 0 ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7758178710938 2 609.774928 1217.5353 0.42898 0.00026158 0.33863 0.00020649 0.76761 0.00046807 609.7754621742216 57.465 0.31268 57.465 57.26 57.573 0 42 13 4 0 0 0 0.48505 1 31934 31934 17.113 4.0704 1 10721000 3764 13095 2569 2617 4291 4291 -0.06476356632970237 AYFNDSQFQV 10 Unmodified _AYFNDSQFQV_ 0 0 0 ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.7750244140625 2 609.774928 1217.5353 0.35893 0.00021887 -0.85174 -0.00051937 -0.4928 -0.0003005 609.7748342353015 58.026 0.41391 57.536 57.31 57.724 -0.48974 32 19 2 0 0 0 0.38092 2 31584 31479;31584 22.736 4.5899 1 33672000 3765 13095 2569 2617 4292;4293 4293 -0.06476356632970237 AYFNFPEL 8 Unmodified _AYFNFPEL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7426147460938 2 500.742368 999.470183 0.16003 8.0132E-05 0.49552 0.00024813 0.65555 0.00032826 500.74245327091927 92.629 0.38412 92.172 91.95 92.334 -0.45741 48 17 4 0 0 0 0.21786 2 50643 50548;50643 67.035 36.811 1 4674700 3766 4951 2570 2618 4294;4295 4295 -0.029573063681368694 AYFNFPEL 8 Unmodified _AYFNFPEL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7430725097656 2 500.742368 999.470183 1.3064 0.00065418 0.18987 9.5074E-05 1.4963 0.00074926 500.74232932815903 91.997 0.32108 92.027 91.886 92.208 0.030197 22 11 3 0 0 0 0.28922 1 51177 51177 56.541 31.867 1 3145200 3767 4951 2570 2618 4296 4296 -0.029573063681368694 AYFNFPEL 8 Unmodified _AYFNFPEL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7431335449219 2 500.742368 999.470183 0.64469 0.00032282 0.9464 0.0004739 1.5911 0.00079673 500.7427221338657 99.639 0.1921 93.464 93.365 93.558 -6.1757 26 11 3 0 0 0 0.17881 1 66388 66388 78.445 46.328 1 154310000 3768 4951 2570 2618 4297 4297 -0.029573063681368694 AYFNFPELL 9 Unmodified _AYFNFPELL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2848510742188 2 557.2844 1112.55425 0.43537 0.00024262 0.63291 0.00035271 1.0683 0.00059533 557.2846642018807 100.34 0.12338 100.34 100.25 100.38 0 10 4 3 0 0 0 0.045537 1 55379 55379 46.921 32.083 1 3650400 3769 4951 2571 2619 4298 4298 0.002472247287641949 AYFNFPELL 9 Unmodified _AYFNFPELL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2850952148438 2 557.2844 1112.55425 0.53145 0.00029617 -0.34921 -0.00019461 0.18224 0.00010156 557.284104491066 100.4 0.16412 100.26 100.16 100.32 -0.13293 18 5 5 0 0 0 0.012158 1 54803 54803 74.396 47.513 1 62804000 3770 4951 2571 2619 4299 4299 0.002472247287641949 AYFNFPELL 9 Unmodified _AYFNFPELL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3076171875 2 557.2844 1112.55425 1.2977 0.00072317 -0.98716 -0.00055013 0.31052 0.00017305 557.2836797856085 101.16 0.30382 94.983 94.889 95.192 -6.1757 69 18 6 0 0 0 0.0095811 2 67781 67781;67789 81.613 45.486 1 5634600000 3771 4951 2571 2619 4300;4301 4300 0.002472247287641949 AYFNFPELL 9 Unmodified _AYFNFPELL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 557.2844 1112.55425 2.3301 0.0012986 -1.7939 -0.0009997 0.53627 0.00029885 557.2834429789397 94.815 0.3166 94.829 94.695 95.012 0.014244 -0.07676 -0.00063826 NaN 81.613 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1858400 3772 4951 2571 2619 0.002472247287641949 AYFNFPELLSL 11 Unmodified _AYFNFPELLSL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.34423828125 2 657.342446 1312.67034 0.51452 0.00033821 -0.25396 -0.00016694 0.26056 0.00017128 657.342286319382 101.95 0.11387 95.77 95.7 95.814 -6.1757 15 5 4 0 0 0 0.00076978 1 68423 68423 96.111 70.712 1 38899000 3773 4951 2572 2620 4302 4302 0.026511235088264584 AYFNTRDL 8 Unmodified _AYFNTRDL_ 0 0 0 REV__ENSG00000124608|ENST00000244571|AARS2 REV__ENSG00000124608|ENST00000244571|AARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1000.4873046875 1 999.489421 998.482145 1.6612 0.0016603 1.2675 0.0012668 2.9287 0.0029272 999.4939081339194 92.131 0.19125 92.161 91.993 92.184 0.03019 8 6 2 0 0 0 0.67481 1 51190 51190 19.439 1.304 1 3562800 + 3774 19458 2573 2621 4303 4303 -0.017156896249616693 AYFPELIANF 10 Unmodified _AYFPELIANF_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8043823242188 2 592.802957 1183.59136 0.37949 0.00022496 1.5365 0.00091086 1.916 0.0011358 592.8038197928819 99.785 0.14464 99.628 99.554 99.699 -0.1575 10 4 3 0 0 0 0.31022 1 54478 54478 26.884 12.978 1 2253100 3775 7164 2574 2622 4304 4304 0.006908962745228564 AYFPELIANF 10 Unmodified _AYFPELIANF_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8030395507812 2 592.802957 1183.59136 2.9793 0.0017661 -2.826 -0.0016753 0.15328 9.0864E-05 592.8013163086468 99.687 0.16893 99.651 99.554 99.723 -0.036301 12 5 3 0 0 0 0.04925 1 55369 55369 58.679 39.422 1 15439000 3776 7164 2574 2622 4305 4305 0.006908962745228564 AYFPTQGYF 9 Unmodified _AYFPTQGYF_ 0 0 0 REV__ENST00000596686.5_1_19:46273741-46282867:-|nuORF REV__ENST00000596686.5_1_19:46273741-46282867:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.25244140625 2 547.2531 1092.49165 1.3615 0.00074509 -2.4079 -0.0013178 -1.0464 -0.00057267 547.2517664040646 64.134 0.38504 57.959 57.765 58.15 -6.1757 41 19 3 0 0 0 0.2143 1 41538 41538 21.747 4.8044 1 34415000 + 3777 29221 2575 2623 4306 4306 -0.05089921339435932 AYFTHRPQP 9 Unmodified _AYFTHRPQP_ 0 0 0 REV__nc|ENSG00000123297|P43897-3|TSFM REV__nc|ENSG00000123297|P43897-3|TSFM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.784423828125 2 558.78289 1115.55123 0.631 0.00035259 1.0206 0.00057028 1.6516 0.00092288 558.7833349252959 90.871 0.91029 90.377 90.074 90.984 -0.49458 190 52 6 0 0 0 0.48152 1 49766 49766 8.5933 0 1 308160000 + 3778 19380 2576 2624 4307 4307 -0.0019260560538896243 AYFTSRDLF 9 Unmodified _AYFTSRDLF_ 0 0 0 nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2756958007812 2 560.277106 1118.53966 0.89589 0.00050195 -2.0262 -0.0011352 -1.1303 -0.00063326 560.2757336672179 62.179 0.19575 61.691 61.592 61.788 -0.48764 21 8 3 0 0 0 0.21589 1 33872 33872 29.082 7.3349 1 2316500 3779 16439 2577 2625 4308 4308 -0.014868474193917791 AYGASFLSF 9 Unmodified _AYGASFLSF_ 0 0 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7352294921875 2 481.734543 961.454533 0.61437 0.00029596 -0.21374 -0.00010296 0.40063 0.000193 481.73424686982406 84.974 0.27229 84.472 84.322 84.594 -0.5015 17 11 2 0 0 0 0.25297 1 46477 46477 19.439 1.304 1 1200400 3780 6664 2578 2626 4309 4309 -0.02773592885182552 AYGASFLSF 9 Unmodified _AYGASFLSF_ 0 0 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 962.46044921875 1 962.46181 961.454533 0.40796 0.00039265 -1.0898 -0.0010489 -0.68186 -0.00065626 962.4610189260036 84.99 0.32401 84.489 84.3 84.624 -0.5015 25 15 2 0 0 0 0.019979 1 46535 46535 63.563 19.705 1 2010700 3781 6664 2578 2626 4310 4310 -0.02773592885182552 AYGASFLSF 9 Unmodified _AYGASFLSF_ 0 0 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20221201_MKP_PDAC_01 4 962.46337890625 1 962.46181 961.454533 0.23995 0.00023094 0.22043 0.00021215 0.46037 0.00044309 962.4620118735462 92.89 0.76848 86.714 86.315 87.084 -6.1757 87 50 2 0 0 0 0.0094915 4 61243 61243;61363;61496;61627 81.864 28.288 1 24498000 3782 6664 2578 2626 4311;4312;4313;4314 4311 -0.02773592885182552 AYGDGSQYCDC 11 Unmodified _AYGDGSQYCDC_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.19677734375 2 591.197338 1180.38012 NaN NaN NaN NaN NaN NaN NaN 1.8461 1 1.7741 1.2741 2.2741 -0.072029 0 0 0 0.94307 1 920 920 0.30703 0 1 + 3783 24352 2579 2627 4315 4315 -0.20285091821165224 AYGDIKERL 9 Unmodified _AYGDIKERL_ 0 0 0 nc|ENSG00000198933|A7MCY6-2|TBKBP1;ENSG00000198933|ENST00000578982|TBKBP1 nc|ENSG00000198933|A7MCY6-2|TBKBP1 nc|ENSG00000198933|A7MCY6-2|TBKBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.530029296875 3 355.529346 1063.56621 1.2929 0.00045965 -0.027109 -9.6381E-06 1.2658 0.00045002 355.5293604218396 35.425 0.36958 31.232 31.04 31.409 -4.1928 52 22 3 0 0 0 0.062454 1 20536 20536 32.898 8.0162 1 30528000 3784 10203 2580 2628 4316 4316 0.036968414719467546 AYGDIKERL 9 Unmodified _AYGDIKERL_ 0 0 0 nc|ENSG00000198933|A7MCY6-2|TBKBP1;ENSG00000198933|ENST00000578982|TBKBP1 nc|ENSG00000198933|A7MCY6-2|TBKBP1 nc|ENSG00000198933|A7MCY6-2|TBKBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.529346 1063.56621 -0.035452 -1.2604E-05 -0.13058 -4.6425E-05 -0.16603 -5.903E-05 355.5292461287883 31.577 0.23704 31.577 31.463 31.7 0 0.17228 -6.3534E-05 NaN 32.898 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6109800 3785 10203 2580 2628 0.036968414719467546 AYGDMNHEW 9 Oxidation (M) _AYGDM(Oxidation (M))NHEW_ AYGDM(1)NHEW AYGDM(50)NHEW 0 0 1 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000486360.1_1_1:203032958-203044890:+|nuORF;ENST00000531657.1_1_11:70218293-70228249:+|nuORF;nc|ENSG00000139220|O75334-8|PPFIA2;ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.71826171875 2 569.716556 1137.41856 0.88828 0.00050607 0.78347 0.00044636 1.6718 0.00095242 569.7167432172062 32.638 0.32372 28.782 28.601 28.924 -3.8562 35 16 3 0 0 0 0.040683 1 18585 18585 49.554 37.314 1 12505000 3786 8677;5559;16228 2581 2629 4317 4317 1020 -0.1446541812435953 AYGEFLSRL 9 Unmodified _AYGEFLSRL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.280517578125 2 528.279649 1054.54475 0.55195 0.00029158 0.36117 0.0001908 0.91312 0.00048238 528.279839712917 64.172 0.41613 63.687 63.492 63.908 -0.48512 58 16 5 0 0 0 0.040683 2 35058 34955;35058 49.554 16.769 1 10132000 3787 7311 2582 2630 4318;4319 4319 0.0196545644323578 AYGEFLSRL 9 Unmodified _AYGEFLSRL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2806396484375 2 528.279649 1054.54475 0.83323 0.00044018 0.82304 0.0004348 1.6563 0.00087497 528.2800322576985 63.753 0.29256 63.742 63.571 63.863 -0.010532 33 13 3 0 0 0 0.029718 1 34859 34859 55.503 26.421 1 7758400 3788 7311 2582 2630 4320 4320 0.0196545644323578 AYGEFLSRL 9 Unmodified _AYGEFLSRL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS AL20221201_MKP_PDAC_01 4 528.2792358398438 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 77.977 1 71.802 71.302 72.302 -6.1757 0 0 0 0.20976 1 51020 51020 29.841 4.4413 1 3789 7311 2582 2630 4321 4321 0.0196545644323578 AYGEHDLFAL 10 Unmodified _AYGEHDLFAL_ 0 0 0 REV__ENSG00000169247|ENST00000515425|SH3TC2 REV__ENSG00000169247|ENST00000515425|SH3TC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2750244140625 2 568.274564 1134.53457 0.49291 0.00028011 0.58864 0.00033451 1.0815 0.00061462 568.2747262157003 100.4 0.1354 100.26 100.19 100.32 -0.13293 12 4 4 0 0 0 0.52888 1 54820 54820 14.838 0.93222 1 4977100 + 3790 22388 2583 2631 4322 4322 -0.027311512819778727 AYGEHDLFAL 10 Unmodified _AYGEHDLFAL_ 0 0 0 REV__ENSG00000169247|ENST00000515425|SH3TC2 REV__ENSG00000169247|ENST00000515425|SH3TC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.274564 1134.53457 0.49291 0.00028011 0.58864 0.00033451 1.0815 0.00061462 568.2747262157003 100.4 0.1354 100.26 100.19 100.32 -0.13293 0 0 NaN 14.838 12 4 4 NaN NaN NaN NaN 0 NaN NaN 0 4977100 + 3791 22388 2583 2631 -0.027311512819778727 AYGEVGRVFF 10 Unmodified _AYGEVGRVFF_ 0 0 0 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7947387695312 2 572.792924 1143.57129 0.77067 0.00044143 0.61372 0.00035154 1.3844 0.00079297 572.7932737571872 64.488 0.30338 64.003 63.844 64.147 -0.48512 31 13 3 0 0 0 0.38026 1 35165 35165 32.786 17.537 1 1869600 3792 5755 2584 2632 4323 4323 0.005251453345636037 AYGEVGRVFF 10 Unmodified _AYGEVGRVFF_ 0 0 0 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 572.792924 1143.57129 0.96811 0.00055453 -0.23258 -0.00013322 0.73553 0.00042131 572.7924402900015 64.038 0.41222 64.027 63.741 64.154 -0.010529 0.011848 -0.00052847 NaN 32.786 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4110900 3793 5755 2584 2632 0.005251453345636037 AYGFEMAKEF 10 Unmodified _AYGFEMAKEF_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2688598632812 2 596.7708 1191.52705 0.80474 0.00048024 -1.5321 -0.00091432 -0.72737 -0.00043408 596.770117183033 75.285 0.45882 74.808 74.538 74.997 -0.47714 71 23 5 0 0 0 0.68719 1 41149 41149 4.3292 0.38484 1 25976000 3794 637 2585 2633 4324 4324 -0.06105626873932124 AYGGAFYAF 9 Unmodified _AYGGAFYAF_ 0 0 0 ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH ENST00000527981.1_1_14:59945878-59946064:-|nuORF ENST00000527981.1_1_14:59945878-59946064:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.4353637695312 1 966.435595 965.428318 0.59885 0.00057875 -0.93079 -0.00089955 -0.33195 -0.0003208 966.4347142953145 73.657 0.32545 73.181 72.974 73.299 -0.47588 27 13 3 0 0 0 0.1492 2 40345 40242;40345 28.173 11.524 1 2411500 3795 3971 2586 2634 4325;4326 4326 -0.05577862056668437 AYGGAFYAF 9 Unmodified _AYGGAFYAF_ 0 0 0 ENST00000527981.1_1_14:59945878-59946064:-|nuORF;ENSG00000126790|ENST00000247194|L3HYPDH ENST00000527981.1_1_14:59945878-59946064:-|nuORF ENST00000527981.1_1_14:59945878-59946064:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4417724609375 1 966.435595 965.428318 0.52648 0.00050881 1.0781 0.0010419 1.6046 0.0015507 966.4369724977956 80.494 0.38049 74.318 74.135 74.516 -6.1757 40 20 3 0 0 0 0.085487 2 52870 52796;52870 36.466 8.3397 1 21373000 3796 3971 2586 2634 4327;4328 4328 -0.05577862056668437 AYGGPVGAGI 10 Unmodified _AYGGPVGAGI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 861.4468994140625 1 861.446494 860.439217 0.32374 0.00027889 -0.074814 -6.4448E-05 0.24893 0.00021444 861.4464161536622 45.812 0.34956 45.812 45.644 45.994 0 49 17 4 0 0 0 0.025277 2 25050 24939;25050 70.865 20.932 1 62122000 + 3797 199 2587 2635 4329;4330 4330 0.0034154031761772785 AYGGPVGAGI 10 Unmodified _AYGGPVGAGI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.2267761230469 2 431.226885 860.439217 0.38887 0.00016769 -0.16012 -6.905E-05 0.22874 9.8641E-05 431.2268077220339 45.822 0.37317 45.822 45.644 46.018 0 44 18 3 0 0 0 0.34789 1 25001 25001 24.674 3.8027 1 45478000 + 3798 199 2587 2635 4331 4331 0.0034154031761772785 AYGGPVGAGI 10 Unmodified _AYGGPVGAGI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 861.44677734375 1 861.446494 860.439217 -0.22383 -0.00019282 0.77707 0.00066941 0.55324 0.00047659 861.4475651470649 46.154 0.19712 45.817 45.723 45.92 -0.33664 15 9 2 0 0 0 0.046949 1 24677 24677 59.795 9.8622 1 3783800 + 3799 199 2587 2635 4332 4332 0.0034154031761772785 AYGGPVGAGI 10 Unmodified _AYGGPVGAGI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20221201_MKP_PDAC_01 4 431.2273254394531 2 431.226885 860.439217 NaN NaN NaN NaN NaN NaN NaN 53.058 1 47.254 46.754 47.754 -5.8042 0 0 0 0.015422 1 33502 33502 70.865 10.475 1 + 3800 199 2587 2635 4333 4333 0.0034154031761772785 AYGHFGRDSF 10 Unmodified _AYGHFGRDSF_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.204345703125 3 386.177195 1155.50976 -0.75634 -0.00029208 1.4213 0.00054886 0.66491 0.00025677 386.17775370080193 33.05 0.20214 33.05 32.927 33.13 0 13 9 2 0 0 0 0.23609 1 17327 17327 8.4443 2.7125 1 1067200 3801 7813 2588 2636 4334 4334 -0.061777863647193954 AYGHFGRDSF 10 Unmodified _AYGHFGRDSF_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1773376464844 3 386.177195 1155.50976 -0.23787 -9.1861E-05 0.38043 0.00014691 0.14256 5.5053E-05 386.1774364129716 33.143 0.21832 32.984 32.86 33.078 -0.15918 20 8 3 0 0 0 0.36296 1 17275 17275 16.275 10.872 1 4233400 3802 7813 2588 2636 4335 4335 -0.061777863647193954 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.740478515625 2 560.740357 1119.46616 0.2893 0.00016222 -0.1871 -0.00010491 0.1022 5.7306E-05 560.7402081506876 54.779 0.59106 54.312 53.948 54.54 -0.46664 93 29 5 0 0 0 0.027803 2 29755 29653;29755 56.541 38.406 1 155120000 3803 1103 2589 2637 4336;4337 4337 -0.08879395861845296 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7406616210938 2 560.740357 1119.46616 0.54371 0.00030488 -0.14377 -8.0617E-05 0.39994 0.00022427 560.7400427894149 54.468 0.3218 54.401 54.182 54.504 -0.066936 37 15 3 0 0 0 0.027803 1 29526 29526 56.541 38.395 1 8974800 3804 1103 2589 2637 4338 4338 -0.08879395861845296 AYGHFSYEF 9 Unmodified _AYGHFSYEF_ 0 0 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7411499023438 2 560.740357 1119.46616 1.1532 0.00064662 -0.023848 -1.3373E-05 1.1293 0.00063325 560.7401977553312 59.943 0.85791 53.828 53.62 54.478 -6.1147 138 46 4 0 0 0 0.027803 4 38439 38439;38576;38708;38894 56.541 41.703 1 377580000 3805 1103 2589 2637 4339;4340;4341;4342 4339 -0.08879395861845296 AYGIRFDII 9 Unmodified _AYGIRFDII_ 0 0 0 ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4;ENST00000543430.5_1_12:121659934-121670518:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2982788085938 2 534.297842 1066.58113 0.19618 0.00010482 -1.3685 -0.00073117 -1.1723 -0.00062635 534.2972047581461 77.684 0.23448 77.737 77.585 77.819 0.052452 12 9 2 0 0 0 0.24903 1 42905 42905 26.268 4.5215 1 3351500 3806 4674 2590 2638 4343 4343 0.050503333399547046 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 355.1907653808594 3 355.190553 1062.54983 0.34868 0.00012385 0.59348 0.0002108 0.94216 0.00033465 355.19074342623173 46.612 0.36897 46.612 46.412 46.781 0 61 16 5 0 0 0 0.16226 1 25441 25441 31.268 15.119 1 50095000 3807 10055 2591 2639 4344 4344 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2801513671875 2 532.282192 1062.54983 0.58443 0.00031108 -1.1446 -0.00060927 -0.56021 -0.00029819 532.2807319967196 46.62 0.32625 46.62 46.436 46.762 0 32 14 3 0 0 0 0.011291 1 25445 25445 76.825 42.423 1 8523300 3808 10055 2591 2639 4345 4345 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.1906433105469 3 355.190553 1062.54983 0.59146 0.00021008 0.26524 9.4209E-05 0.8567 0.00030429 355.1906071321278 46.806 0.33395 46.469 46.29 46.624 -0.33664 66 16 5 0 0 0 0.095405 2 25015 25015;25118 24.991 12.75 1 150980000 3809 10055 2591 2639 4346;4347 4346 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.28125 2 532.282192 1062.54983 0.56165 0.00029896 0.11843 6.3039E-05 0.68008 0.000362 532.2821096731685 46.819 0.295 46.483 46.309 46.604 -0.33664 36 14 3 0 0 0 0.0090524 2 25024 25024;25130 85.642 41.783 1 20620000 3810 10055 2591 2639 4348;4349 4348 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.1907653808594 3 355.190553 1062.54983 1.0538 0.00037428 -0.084067 -2.986E-05 0.96968 0.00034442 355.19047715302264 46.553 0.30708 46.519 46.349 46.656 -0.033417 46 14 4 0 0 0 0.095405 1 25020 25020 31.268 10.854 1 21383000 3811 10055 2591 2639 4350 4350 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2818603515625 2 532.282192 1062.54983 1.1652 0.00062023 0.19805 0.00010542 1.3633 0.00072564 532.2823198145879 46.533 0.22712 46.5 46.39 46.617 -0.033417 19 10 2 0 0 0 0.025842 1 25034 25034 57.722 27.085 1 2895800 3812 10055 2591 2639 4351 4351 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.1909790039062 3 355.190553 1062.54983 1.3787 0.00048971 -0.1703 -6.0491E-05 1.2084 0.00042921 355.1904045659321 51.561 0.43223 45.912 45.672 46.104 -5.649 78 26 4 0 0 0 0.07916 2 32473 32351;32473 34.932 13.395 1 328390000 3813 10055 2591 2639 4352;4353 4353 0.021057603058579843 AYGKDFHLI 9 Unmodified _AYGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MSMS AL20221201_MKP_PDAC_01 4 532.284423828125 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 51.45 1 45.801 45.301 46.301 -5.649 0 0 0 0.014715 1 32374 32374 85.642 43.802 1 3814 10055 2591 2639 4354 4354 0.021057603058579843 AYGKVFLV 8 Unmodified _AYGKVFLV_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5 nc|ENSG00000162302|O75676-2|RPS6KA4;nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7653503417969 2 448.765646 895.516739 0.82201 0.00036889 -2.3146 -0.0010387 -1.4926 -0.00066981 448.7646254501766 56.778 0.14103 56.709 56.578 56.72 -0.068737 10 6 2 0 0 0 0.78849 1 30880 30880 9.3474 0.75416 1 1103900 3815 6846;1875 2592 2640 4355 4355 0.06480178253798385 AYGLDFYIL 9 Unmodified _AYGLDFYIL_ 0 0 0 ENST00000481453.5_1_16:418974-419244:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;ENSG00000086504|ENST00000199706|MRPL28 ENST00000481453.5_1_16:418974-419244:-|nuORF ENST00000481453.5_1_16:418974-419244:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.2938842773438 2 537.778951 1073.54335 0.93305 0.00050178 -0.89757 -0.0004827 0.035479 1.908E-05 537.7793417238985 101.26 0.09288 95.089 95.032 95.125 -6.1757 12 5 4 0 0 0 0.12572 1 67912 67912 32.117 8.9685 1 35965000 3816 1435 2593 2641 4356 4356 0.009518223544773718 AYGLPRFGTHF 11 Unmodified _AYGLPRFGTHF_ 0 0 0 ENST00000360284.7_1_12:52448627-52448831:+|nuORF ENST00000360284.7_1_12:52448627-52448831:+|nuORF ENST00000360284.7_1_12:52448627-52448831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5497131347656 3 422.552374 1264.63529 0.12023 5.0804E-05 -0.95118 -0.00040192 -0.83095 -0.00035112 422.55216816166086 21.5 0.12244 21.514 21.445 21.567 0.013796 24 16 2 0 0 0 0.70701 1 11005 11005 1.4551 0.24029 1 1736700 3817 12161 2594 2642 4357 4357 0.01355925491520793 AYGLPRFGTHF 11 Unmodified _AYGLPRFGTHF_ 0 0 0 ENST00000360284.7_1_12:52448627-52448831:+|nuORF ENST00000360284.7_1_12:52448627-52448831:+|nuORF ENST00000360284.7_1_12:52448627-52448831:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 422.552374 1264.63529 0.546 0.00023071 0.7648 0.00032317 1.3108 0.00055388 422.55255138822037 24.561 0.18145 21.678 21.541 21.723 -2.8831 0.082209 0.00084521 NaN 1.4551 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3590300 3818 12161 2594 2642 0.01355925491520793 AYGLQDLLF 9 Unmodified _AYGLQDLLF_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2769165039062 2 520.276575 1038.5386 1.4035 0.0007302 0.19248 0.00010014 1.596 0.00083034 520.2765100008281 101.08 0.2105 94.902 94.78 94.99 -6.1757 42 11 5 0 0 0 0.013472 1 67719 67719 70.716 6.4792 1 437480000 3819 8844 2595 2643 4358 4358 0.020869382117098212 AYGLQSCED 9 Unmodified _AYGLQSCED_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.1977844238281 2 493.200207 984.385861 NaN NaN NaN NaN NaN NaN NaN 51.526 1 51.526 51.026 52.026 0 0 0 0 0.6032 1 28460 28460 12.532 3.9383 1 3820 10258 2596 2644 4359 4359 -0.10695625247205953 AYGLVSATF 9 Unmodified _AYGLVSATF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4788818359375 1 928.47746 927.470183 0.50711 0.00047084 -0.23396 -0.00021723 0.27315 0.00025361 928.4778739799206 67.982 0.31126 67.982 67.788 68.099 0 32 15 3 0 0 0 0.068777 1 37864 37864 40.449 15.775 1 1781700 3821 6487 2597 2645 4360 4360 0.00354693631857117 AYGLVSATF 9 Unmodified _AYGLVSATF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4785766601562 1 928.47746 927.470183 0.37514 0.00034831 0.17639 0.00016377 0.55153 0.00051208 928.477672055655 68.464 0.43744 67.983 67.764 68.202 -0.48071 57 19 4 0 0 0 0.0086629 2 37352 37352;37452 101.72 40.365 1 25757000 3822 6487 2597 2645 4361;4362 4361 0.00354693631857117 AYGLVSATF 9 Unmodified _AYGLVSATF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7767639160156 2 464.742368 927.470183 0.32812 0.00015249 0.42433 0.0001972 0.75245 0.00034969 464.74250307530804 68.45 0.29318 67.969 67.825 68.118 -0.48071 23 12 2 0 0 0 0.15246 1 37384 37384 26.341 6.9023 1 2258900 3823 6487 2597 2645 4363 4363 0.00354693631857117 AYGLVSATF 9 Unmodified _AYGLVSATF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.4777221679688 1 928.47746 927.470183 0.663 0.00061558 0.29767 0.00027638 0.96067 0.00089196 928.4776080750015 68.002 0.27152 68.027 67.836 68.108 0.025146 26 12 3 0 0 0 0.045537 1 37291 37291 46.921 16.696 1 4161600 3824 6487 2597 2645 4364 4364 0.00354693631857117 AYGLVSATF 9 Unmodified _AYGLVSATF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4783325195312 1 928.47746 927.470183 0.87188 0.00080952 -0.1882 -0.00017474 0.68368 0.00063478 928.4772708524663 75.179 0.80711 69.003 68.606 69.413 -6.1757 107 43 3 0 0 0 0.0089973 4 49079 48954;49079;49210;49336 86.121 31.348 1 84972000 3825 6487 2597 2645 4365;4366;4367;4368 4366 0.00354693631857117 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.4556884765625 1 975.457059 974.449782 -0.96671 -0.00094298 0.28458 0.0002776 -0.68213 -0.00066539 975.4572399845412 77.873 0.32191 77.391 77.143 77.465 -0.4826 44 19 3 0 0 0 0.0082281 2 42654 42548;42654 92.822 18.399 1 10350000 3826 4659 2598 2646 4369;4370 4370 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2321166992188 2 488.232168 974.449782 -0.72328 -0.00035313 0.48537 0.00023697 -0.23792 -0.00011616 488.2322451793577 77.887 0.33083 77.405 77.121 77.452 -0.4826 37 17 3 0 0 0 0.045537 1 42602 42602 46.921 16.696 1 9598900 3827 4659 2598 2646 4371 4371 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2323913574219 2 488.232168 974.449782 0.35152 0.00017162 -0.20323 -9.9222E-05 0.14829 7.2401E-05 488.2320584538557 77.335 0.33693 77.385 77.221 77.558 0.05011 30 13 3 0 0 0 0.18465 1 42650 42650 24.674 1.5255 1 5105000 3828 4659 2598 2646 4372 4372 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 975.4584350585938 1 975.457059 974.449782 0.42602 0.00041557 -0.7976 -0.00077803 -0.37158 -0.00036246 975.4562674043951 77.364 0.33693 77.414 77.221 77.558 0.05011 22 13 2 0 0 0 0.023164 1 42652 42652 60.39 18.295 1 6145700 3829 4659 2598 2646 4373 4373 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.4585571289062 1 975.457059 974.449782 -0.17171 -0.00016749 0.34224 0.00033384 0.17053 0.00016635 975.4573868417019 84.903 0.48848 78.727 78.503 78.992 -6.1757 72 28 3 0 0 0 0.0083087 3 55767 55767;55887;56009 97.075 25.19 1 76204000 3830 4659 2598 2646 4374;4375;4376 4374 -0.03846477027957462 AYGNVFSAF 9 Unmodified _AYGNVFSAF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2312622070312 2 488.232168 974.449782 0.094833 4.63E-05 0.48929 0.00023889 0.58413 0.00028519 488.23239911578304 84.902 0.49194 78.726 78.483 78.975 -6.1757 70 28 3 0 0 0 0.010877 3 56036 55782;55913;56036 77.984 23.211 1 67432000 3831 4659 2598 2646 4377;4378;4379 4379 -0.03846477027957462 AYGRFIQERF 10 Unmodified _AYGRFIQERF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.5590515136719 3 429.559528 1285.65676 0.59857 0.00025712 -0.14731 -6.3279E-05 0.45126 0.00019384 429.5595123360498 43.2 0.16308 43.184 43.083 43.246 -0.015667 17 7 3 0 0 0 0.1711 1 23153 23153 37.251 23.716 1 7010700 3832 10837 2599 2647 4380 4380 0.025353105202157167 AYGSAVLTF 9 Unmodified _AYGSAVLTF_ 0 0 0 ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97 ENSG00000179698|ENST00000323662|WDR97 ENSG00000179698|ENST00000323662|WDR97 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7422790527344 2 464.742368 927.470183 NaN NaN NaN NaN NaN NaN NaN 67.939 1 67.939 67.439 68.439 0 0 0 0 0.7243 1 37880 37880 8.5933 0 1 3833 8853 2600 2648 4381 4381 0.00354693631857117 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 985.499267578125 1 985.498923 984.491647 0.38835 0.00038271 0.31351 0.00030897 0.70186 0.00069168 985.4989476258679 75.874 0.34155 75.397 75.255 75.596 -0.47713 35 14 3 0 0 0 0.03327 2 41491 41491;41591 53.576 23.351 1 4871800 3834 4990 2601 2649 4382;4383 4382 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2537231445312 2 493.2531 984.491647 0.66453 0.00032778 0.20209 9.9679E-05 0.86662 0.00042746 493.253023561654 75.903 0.47154 75.426 75.148 75.62 -0.47714 57 20 4 0 0 0 0.10925 2 41509 41509;41607 32.117 8.9685 1 10528000 3835 4990 2601 2649 4384;4385 4384 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 985.4967041015625 1 985.498923 984.491647 0.54262 0.00053476 -0.13675 -0.00013477 0.40588 0.00039999 985.4993153221006 75.352 0.26899 75.398 75.266 75.535 0.045959 18 12 2 0 0 0 0.078417 1 41521 41521 38.151 17.698 1 2144100 3836 4990 2601 2649 4386 4386 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2537536621094 2 493.2531 984.491647 0.45693 0.00022538 0.82195 0.00040543 1.2789 0.00063081 493.2533866221958 75.342 0.26846 75.388 75.288 75.557 0.045959 26 12 3 0 0 0 0.25297 1 41539 41539 19.439 3.6708 1 2050400 3837 4990 2601 2649 4387 4387 -0.0012192133942789951 AYGSLFNTI 9 Unmodified _AYGSLFNTI_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.2531 984.491647 0.21399 0.00010555 0.16143 7.9628E-05 0.37542 0.00018518 493.25340747729587 75.442 0.34535 75.442 75.25 75.595 0 0.022919 -0.00023596 NaN 32.117 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 395690 3838 4990 2601 2649 -0.0012192133942789951 AYGSVKAYTNF 11 Unmodified _AYGSVKAYTNF_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5367126464844 3 407.536389 1219.58734 0.30748 0.00012531 0.21923 8.9343E-05 0.52671 0.00021465 407.5361974107053 54.068 0.20021 53.601 53.487 53.687 -0.46664 16 9 2 0 0 0 0.70701 1 29300 29300 1.4551 0 1 2349700 3839 9079 2602 2650 4388 4388 -0.013671932191982705 AYGTVHYF 8 Unmodified _AYGTVHYF_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2264404296875 2 479.226885 956.439217 0.16634 7.9716E-05 0.2115 0.00010135 0.37784 0.00018107 479.2269722188869 43.332 0.2242 43.332 43.262 43.486 0 32 10 4 0 0 0 0.38711 1 23531 23531 45.75 13.633 1 27029000 3840 1780 2603 2651 4389 4389 -0.04074459682385623 AYGTVHYF 8 Unmodified _AYGTVHYF_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2258605957031 2 479.226885 956.439217 0.24727 0.0001185 -1.7385 -0.00083314 -1.4912 -0.00071464 479.2260540646352 43.594 0.21413 43.284 43.124 43.338 -0.31039 16 9 2 0 0 0 0.38711 1 23179 23179 45.75 5.3014 1 35616000 3841 1780 2603 2651 4390 4390 -0.04074459682385623 AYGTVHYF 8 Unmodified _AYGTVHYF_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.227294921875 2 479.226885 956.439217 0.74715 0.00035806 0.13292 6.3697E-05 0.88007 0.00042175 479.22691771522506 48.124 0.78094 42.89 42.482 43.263 -5.2339 113 47 4 0 0 0 0.24182 3 29928 29802;29928;30059 63.394 22.945 1 126190000 3842 1780 2603 2651 4391;4392;4393 4392 -0.04074459682385623 AYGTVHYF 8 Unmodified _AYGTVHYF_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000514938.1_1_22:50943733-50944613:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.445556640625 1 957.446494 956.439217 0.45217 0.00043293 0.15267 0.00014617 0.60484 0.0005791 957.4465307580773 48.154 0.10704 42.92 42.851 42.958 -5.2339 7 5 2 0 0 0 0.073316 1 29975 29975 120.86 50.141 1 4949000 3843 1780 2603 2651 4394 4394 -0.04074459682385623 AYGTYRSNF 9 Unmodified _AYGTYRSNF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7517700195312 2 539.751256 1077.48796 0.27376 0.00014776 0.09722 5.2475E-05 0.37097 0.00020023 539.7512315642547 31.299 0.20503 31.299 31.174 31.379 0 16 9 2 0 0 0 0.10247 1 16304 16304 32.786 7.3864 1 1766500 3844 5929 2604 2652 4395 4395 -0.047685911132930414 AYGTYRSNF 9 Unmodified _AYGTYRSNF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.751256 1077.48796 0.27376 0.00014776 0.09722 5.2475E-05 0.37097 0.00020023 539.7512315642547 31.299 0.20503 31.299 31.174 31.379 0 0.046281 -0.00023392 NaN 32.786 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1766500 3845 5929 2604 2652 -0.047685911132930414 AYGTYRSNF 9 Unmodified _AYGTYRSNF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.751256 1077.48796 0.10635 5.7403E-05 0.72037 0.00038882 0.82672 0.00044622 539.7515225944818 31.309 0.14818 31.206 31.136 31.284 -0.10269 -0.046281 0.00043877 NaN 32.786 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1232600 3846 5929 2604 2652 -0.047685911132930414 AYGVRFTRL 9 Unmodified _AYGVRFTRL_ 0 0 0 ENSG00000161179|ENST00000292778|YDJC ENSG00000161179|ENST00000292778|YDJC ENSG00000161179|ENST00000292778|YDJC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5419311523438 3 361.541697 1081.60326 -0.02448 -8.8504E-06 0.64582 0.00023349 0.62134 0.00022464 361.5420624438427 42.121 0.18374 42.112 42.003 42.187 -0.0088196 12 8 2 0 0 0 0.13231 1 22549 22549 29.841 12.728 1 8464500 3847 6785 2605 2653 4396 4396 0.06572557808362944 AYGWVSATF 9 Unmodified _AYGWVSATF_ 0 0 0 nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2402648925781 2 501.239993 1000.46543 0.24323 0.00012192 0.31812 0.00015945 0.56135 0.00028137 501.2401867800334 74.799 0.28035 74.845 74.704 74.984 0.045959 17 12 2 0 0 0 0.25297 1 41253 41253 19.439 9.2556 1 2154000 3848 5893 2606 2654 4397 4397 -0.03478190510918466 AYGWVSATF 9 Unmodified _AYGWVSATF_ 0 0 0 nc|ENSG00000148110|Q5SR56-2|MFSD14B;ENSG00000148110|ENST00000375344|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B nc|ENSG00000148110|Q5SR56-2|MFSD14B MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2401733398438 2 501.239993 1000.46543 0.74855 0.00037521 -0.07252 -3.635E-05 0.67603 0.00033886 501.23985687024475 82.693 0.50201 76.518 76.288 76.79 -6.1757 55 28 2 0 0 0 0.045537 3 54344 54219;54344;54477 46.921 28.775 1 35964000 3849 5893 2606 2654 4398;4399;4400 4399 -0.03478190510918466 AYHALTKLI 9 Unmodified _AYHALTKLI_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.30810546875 2 515.30821 1028.60187 0.94894 0.000489 -0.80149 -0.00041301 0.14745 7.5983E-05 515.3079887579423 49.563 0.15624 49.514 49.412 49.568 -0.048828 9 7 2 0 0 0 0.16226 1 26765 26765 26.884 5.137 1 1726900 3850 6393 2607 2655 4401 4401 0.08870923719587154 AYHDSFHLF 9 Unmodified _AYHDSFHLF_ 0 0 0 REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5106811523438 3 379.510174 1135.50869 NaN NaN NaN NaN NaN NaN NaN 26.132 1 26.132 25.632 26.632 0 0 0 0 0.83812 1 13423 13423 2.9952 0 1 + 3851 28583 2608 2656 4402 4402 -0.05364000733629837 AYHFTVFVF 9 Unmodified _AYHFTVFVF_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7871704101562 2 565.78711 1129.55967 0.7968 0.00045082 0.61163 0.00034605 1.4084 0.00079687 566.289056583921 90.323 0.30957 90.366 90.243 90.553 0.042175 24 10 3 0 0 0 0.07087 1 50256 50256 53.576 33.122 1 10726000 3852 5874 2609 2657 4403 4403 6.948311238375027E-05 AYHFTVFVF 9 Unmodified _AYHFTVFVF_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7833862304688 2 565.78711 1129.55967 0.6418 0.00036312 0.51143 0.00028936 1.1532 0.00065248 565.7862541213125 99.657 0.17521 93.481 93.365 93.541 -6.1757 19 9 3 0 0 0 0.044011 1 66415 66415 63.563 43.109 1 48658000 3853 5874 2609 2657 4404 4404 6.948311238375027E-05 AYHHYAFKI 9 Unmodified _AYHHYAFKI_ 0 0 0 ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2015991210938 3 383.866181 1148.57671 -0.24048 -9.2314E-05 1.5895 0.00061016 1.349 0.00051784 383.86670464526645 33.107 0.26495 32.948 32.787 33.052 -0.15918 22 10 3 0 0 0 0.14 1 17257 17257 29.082 15.467 1 2832300 3854 13497 2610 2658 4405 4405 0.008368689170310972 AYHHYAFKI 9 Unmodified _AYHHYAFKI_ 0 0 0 ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8661804199219 3 383.866181 1148.57671 NaN NaN NaN NaN NaN NaN NaN 32.903 1 32.932 32.432 33.432 0.029743 0 0 0 0.18351 1 17291 17291 32.786 15.673 1 3855 13497 2610 2658 4406 4406 0.008368689170310972 AYHHYAFKI 9 Unmodified _AYHHYAFKI_ 0 0 0 ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF ENST00000448876.5_1_3:185009426-185009459:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8662414550781 3 383.866181 1148.57671 1.4766 0.00056682 0.31616 0.00012136 1.7928 0.00068818 383.866154087817 36.084 0.37233 31.892 31.694 32.067 -4.1928 41 22 2 0 0 0 0.14 1 21104 21104 29.082 20.336 1 18115000 3856 13497 2610 2658 4407 4407 0.008368689170310972 AYHILSFHA 9 Unmodified _AYHILSFHA_ 0 0 0 REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5188903808594 3 353.518781 1057.53451 -0.29326 -0.00010367 0.77569 0.00027422 0.48243 0.00017055 353.5190634593195 36.194 0.25146 36.219 36.075 36.326 0.024967 20 10 2 0 0 0 0.39863 1 19150 19150 8.1555 1.4324 1 10832000 + 3857 17900;19897 2611 2659 4408 4408 0.008048935086662823 AYHLGRVRE 9 Unmodified _AYHLGRVRE_ 0 0 0 ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC ENSG00000132763|ENST00000401061|MMACHC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.321533203125 2 550.801614 1099.58868 -0.45019 -0.00024796 -0.82641 -0.00045519 -1.2766 -0.00070315 550.8009286151363 55.575 0.10507 55.575 55.487 55.592 0 6 4 2 0 0 0 0.203 1 30878 30878 9.3474 6.0661 1 991790 3858 4448 2612 2660 4409 4409 0.04286485660236394 AYHNAELFF 9 Unmodified _AYHNAELFF_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2647094726562 2 556.263999 1110.51345 0.47182 0.00026246 0.1088 6.0523E-05 0.58063 0.00032298 556.2638732052109 63.361 0.21403 63.361 63.17 63.384 0 11 8 2 0 0 0 0.1773 1 35332 35332 25.399 10.818 1 1187300 3859 8061 2613 2661 4410 4410 -0.03739116590872982 AYHNAELFF 9 Unmodified _AYHNAELFF_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.26416015625 2 556.263999 1110.51345 0.57279 0.00031862 0.6115 0.00034015 1.1843 0.00065878 556.2644210371342 63.655 0.30355 63.169 62.992 63.295 -0.48617 25 13 2 0 0 0 0.070838 1 34728 34728 39.957 16.809 1 3492100 3860 8061 2613 2661 4411 4411 -0.03739116590872982 AYHNLMQDY 9 Unmodified _AYHNLMQDY_ 0 0 0 REV__ENSG00000138892|ENST00000433387|TTLL8 REV__ENSG00000138892|ENST00000433387|TTLL8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.279296875 2 577.750398 1153.48624 0.21934 0.00012672 -0.0015366 -8.8777E-07 0.2178 0.00012583 577.75072750197 40.093 0.1849 40.093 40.03 40.214 0 15 8 2 0 0 0 0.203 1 21517 21517 9.3474 5.0182 1 2844000 + 3861 20380 2614 2662 4412 4412 -0.08435968193566623 AYHNSPAYL 9 Unmodified _AYHNSPAYL_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2483520507812 2 518.248349 1034.48214 -0.34977 -0.00018127 -0.01634 -8.4684E-06 -0.36611 -0.00018974 518.2483660863073 33.158 0.37672 33.158 32.988 33.365 0 62 18 5 0 0 0 0.039985 1 17366 17366 49.933 24.534 1 83618000 3862 94 2615 2663 4413 4413 -0.03371689624964347 AYHNSPAYL 9 Unmodified _AYHNSPAYL_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2491455078125 2 518.248349 1034.48214 1.026 0.00053175 1.2866 0.00066678 2.3126 0.0011985 518.2482926749069 36.91 0.56649 32.627 32.324 32.891 -4.2835 132 34 5 0 0 0 0.0067112 3 21712 21457;21578;21712 112.59 60.325 1 167460000 3863 94 2615 2663 4414;4415;4416 4416 -0.03371689624964347 AYHNWRHAF 9 Unmodified _AYHNWRHAF_ 0 0 0 ENSG00000138735|ENST00000354960|PDE5A;nc|ENSG00000138735|O76074-2|PDE5A;ENST00000513594.5_1_4:120438269-120460171:-|nuORF ENSG00000138735|ENST00000354960|PDE5A ENSG00000138735|ENST00000354960|PDE5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.1940002441406 3 401.19318 1200.55771 0.61113 0.00024518 0.34276 0.00013751 0.95389 0.00038269 401.19313519463043 28.13 0.23593 24.982 24.861 25.097 -3.1482 30 12 3 0 0 0 0.025842 1 15629 15629 57.722 42.765 1 9975500 3864 5093 2616 2664 4417 4417 -0.03454667654023069 AYHVPPPPP 9 Unmodified _AYHVPPPPP_ 0 0 0 REV__nc|ENSG00000130396|P55196-2|AFDN REV__nc|ENSG00000130396|P55196-2|AFDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2032470703125 2 487.758352 973.502152 0.3518 0.00017159 0.82704 0.0004034 1.1788 0.00057499 487.758620944886 58.219 0.26359 58.219 58.103 58.366 0 15 9 2 0 0 0 0.46577 1 32353 32353 9.3474 0 1 1337800 + 3865 19719 2617 2665 4418 4418 0.014341061056597937 AYHVVEFHA 9 Unmodified _AYHVVEFHA_ 0 0 0 REV__MYH7B|p.Q1330Dfs*60|1|0.16|ENSG00000078814|chr20:34998408-34998409|AC/-|frameshift_variant REV__MYH7B|p.Q1330Dfs*60|1|0.16|ENSG00000078814|chr20:34998408-34998409|AC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7639770507812 2 536.764166 1071.51378 -0.46997 -0.00025226 0.4518 0.00024251 -0.018169 -9.7525E-06 536.7642892529061 35.403 0.2222 35.181 35.023 35.245 -0.2224 23 9 3 0 0 0 0.46501 1 18521 18521 9.3474 0 1 3781200 + 3866 17638 2618 2666 4419 4419 -0.0191169687097954 AYHYWGVAPG 10 Unmodified _AYHYWGVAPG_ 0 0 0 REV__ENSG00000204347|ENST00000375366|BTBD17 REV__ENSG00000204347|ENST00000375366|BTBD17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1795349121094 3 374.178536 1119.51378 1.566 0.00058597 0.74546 0.00027894 2.3115 0.00086491 374.17894391427086 33.411 1.1798 29.426 29.264 30.444 -3.9853 329 66 6 0 0 0 0.65502 1 19227 19227 10.8 10.8 1 15195000000 + 3867 24161 2619 2667 4420 4420 -0.04119696871021006 AYIDYLSHL 9 Unmodified _AYIDYLSHL_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2826538085938 2 547.779482 1093.54441 0.067226 3.6825E-05 1.5989 0.00087587 1.6662 0.00091269 547.7793597034816 71.751 0.24074 71.751 71.599 71.84 0 16 10 2 0 0 0 0.038285 2 39952 39939;39952 50.855 29.108 1 990580 3868 8565 2620 2668 4421;4422 4422 0.0013803672338781325 AYIDYLSHL 9 Unmodified _AYIDYLSHL_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7791748046875 2 547.779482 1093.54441 0.49648 0.00027196 0.058776 3.2196E-05 0.55526 0.00030416 547.7787800176242 72.166 0.41387 71.69 71.441 71.854 -0.47609 36 17 4 0 0 0 0.038285 1 39498 39498 50.855 16.753 1 8297700 3869 8565 2620 2668 4423 4423 0.0013803672338781325 AYIDYNMIVAF 11 Oxidation (M) _AYIDYNM(Oxidation (M))IVAF_ AYIDYNM(1)IVAF AYIDYNM(60)IVAF 0 0 1 ENSG00000137959|ENST00000370751|IFI44L;nc|ENSG00000137959|Q53G44-2|IFI44L;ENST00000486882.5_1_1:79093429-79094083:+|nuORF ENSG00000137959|ENST00000370751|IFI44L ENSG00000137959|ENST00000370751|IFI44L MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.8202514648438 2 668.318114 1334.62167 0.94474 0.00063138 0.11723 7.8347E-05 1.062 0.00070973 668.3180388787061 94.203 0.49332 88.027 87.806 88.299 -6.1757 59 28 3 0 0 0 0.017265 2 62484 62358;62484 60.074 45.236 1 12378000 3870 4993 2621 2669 4424;4425 4425 911 -0.03225113122607581 AYIDYNMIVAF 11 Unmodified _AYIDYNMIVAF_ 0 0 0 ENSG00000137959|ENST00000370751|IFI44L;nc|ENSG00000137959|Q53G44-2|IFI44L;ENST00000486882.5_1_1:79093429-79094083:+|nuORF ENSG00000137959|ENST00000370751|IFI44L ENSG00000137959|ENST00000370751|IFI44L MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.3195190429688 2 660.320657 1318.62676 0.5698 0.00037625 -0.014011 -9.2515E-06 0.55579 0.000367 660.3201365230208 100.51 0.15013 94.338 94.254 94.404 -6.1757 20 8 3 0 0 0 0.0088414 1 67247 67247 69.105 47.358 1 50682000 3871 4993 2621 2670 4426 4426 -0.019808092599987503 AYIERMNYI 9 Oxidation (M) _AYIERM(Oxidation (M))NYI_ AYIERM(1)NYI AYIERM(66)NYI 0 0 1 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7893676757812 2 594.789524 1187.56449 0.15903 9.4591E-05 -0.283 -0.00016832 -0.12397 -7.3734E-05 594.7893227044086 39.328 0.35353 39.328 39.154 39.508 0 83 16 7 0 0 0 0.017075 1 21121 21121 66.457 41.057 1 32858000 3872 8566;427 2622 2671 4427 4427 51 -0.02178535608322818 AYIERMNYI 9 Oxidation (M) _AYIERM(Oxidation (M))NYI_ AYIERM(1)NYI AYIERM(86)NYI 0 0 1 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7888793945312 2 594.789524 1187.56449 0.058687 3.4906E-05 -1.0576 -0.00062906 -0.99893 -0.00059415 594.7890981920283 39.703 0.33274 39.406 39.197 39.53 -0.29716 38 15 3 0 0 0 0.0090524 1 20907 20907 85.642 49.514 1 9338400 3873 8566;427 2622 2671 4428 4428 51 -0.02178535608322818 AYIERMNYI 9 Oxidation (M) _AYIERM(Oxidation (M))NYI_ AYIERM(1)NYI AYIERM(76)NYI 0 0 1 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2908935546875 2 594.789524 1187.56449 0.22703 0.00013503 0.037775 2.2468E-05 0.2648 0.0001575 594.7896245161742 44.81 0.49873 39.958 39.677 40.175 -4.852 95 38 3 0 0 0 0.011671 2 27325 27325;27457 75.761 49.493 1 81101000 3874 8566;427 2622 2671 4429;4430 4429 51 -0.02178535608322818 AYIERMNYI 9 Unmodified _AYIERMNYI_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7929077148438 2 586.792066 1171.56958 -0.088174 -5.174E-05 0.36815 0.00021603 0.27998 0.00016429 587.2931355972967 51.25 0.23137 50.836 50.698 50.93 -0.41351 20 11 2 0 0 0 0.010301 1 27618 27618 79.596 33.575 1 3268100 3875 8566;427 2622 2672 4431 4431 -0.009342317456912497 AYIERMNYI 9 Unmodified _AYIERMNYI_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7923583984375 2 586.792066 1171.56958 0.62569 0.00036715 -1.0462 -0.00061388 -0.42047 -0.00024673 586.7917256991495 56.966 0.51607 50.989 50.736 51.252 -5.9769 71 30 3 0 0 0 0.0017364 2 36302 36302;36431 134.3 72.938 1 97298000 3876 8566;427 2622 2672 4432;4433 4432 -0.009342317456912497 AYIIIFLTGL 10 Unmodified _AYIIIFLTGL_ 0 0 0 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.0416259765625 3 375.230237 1122.66888 0.95034 0.0003566 3.0862 0.001158 4.0366 0.0015146 375.23126527927815 17.433 0.034348 14.846 14.824 14.858 -2.5866 5 4 2 0 0 0 0.23675 1 9107 9107 7.1017 2.7725 1 2348800 3877 3941 2623 2673 4434 4434 0.11245534210684127 AYIKGGWIL 9 Unmodified _AYIKGGWIL_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-2|TTC39C ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7974243164062 2 510.797478 1019.5804 0.83548 0.00042676 -0.28008 -0.00014307 0.5554 0.0002837 510.7974383443248 69.032 0.25694 69.063 68.93 69.187 0.030914 21 12 2 0 0 0 0.087258 1 37953 37953 36.044 17.909 1 2301900 3878 7732 2624 2674 4435 4435 0.07139538690910285 AYIKQQGIHF 10 Unmodified _AYIKQQGIHF_ 0 0 0 ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2200927734375 3 402.220624 1203.64004 0.74054 0.00029786 -0.55517 -0.0002233 0.18538 7.4562E-05 402.55518452637216 43.785 0.36296 39.02 38.791 39.153 -4.7648 50 22 3 0 0 0 0.31022 1 26593 26593 17.443 6.3774 1 11481000 3879 9943 2625 2675 4436 4436 0.04636809634257588 AYILDTLVF 9 Unmodified _AYILDTLVF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.79443359375 2 527.794601 1053.57465 1.0763 0.00056807 -1.0439 -0.00055095 0.032442 1.7123E-05 527.7944310360383 101.25 0.22675 95.073 95.004 95.231 -6.1757 42 13 4 0 0 0 0.016494 1 67876 67876 67.035 6.6458 1 392520000 3880 1364 2626 2676 4437 4437 0.05000395388583456 AYILDTLVFAF 11 Unmodified _AYILDTLVFAF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8485107421875 2 636.847364 1271.68018 0.85723 0.00054592 1.2935 0.00082376 2.1507 0.0013697 636.8478044973735 102.38 0.07225 96.2 96.158 96.23 -6.1757 12 5 3 0 0 0 0.19546 1 68715 68715 32.305 22.922 1 4003200 3881 1364 2627 2677 4438 4438 0.055203115141921444 AYINKVEEL 9 Unmodified _AYINKVEEL_ 0 0 0 ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI ENSG00000155368|ENST00000355857|DBI ENSG00000155368|ENST00000355857|DBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.79248046875 2 539.792589 1077.57063 0.055846 3.0145E-05 -0.56669 -0.0003059 -0.51085 -0.00027575 539.7923241573641 43.774 0.28728 43.774 43.627 43.914 0 41 15 3 0 0 0 0.0017364 2 23866 23757;23866 134.3 15.401 1 216200000 3882 6385 2628 2678 4439;4440 4440 0.03494305894855643 AYINKVEEL 9 Unmodified _AYINKVEEL_ 0 0 0 ENSG00000155368|ENST00000355857|DBI;nc|ENSG00000155368|P07108-3|DBI;nc|ENSG00000155368|P07108-2|DBI;nc|ENSG00000155368|P07108-4|DBI;nc|ENSG00000155368|P07108-5|DBI ENSG00000155368|ENST00000355857|DBI ENSG00000155368|ENST00000355857|DBI MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7926025390625 2 539.792589 1077.57063 1.0651 0.00057491 -0.20255 -0.00010933 0.8625 0.00046557 539.7923083614377 49.519 0.52614 44.122 43.853 44.379 -5.3961 94 32 4 0 0 0 0.020973 2 30956 30956;31092 62.573 12.64 1 365350000 3883 6385 2628 2678 4441;4442 4441 0.03494305894855643 AYINRASLL 9 Unmodified _AYINRASLL_ 0 0 0 nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7957153320312 2 510.795466 1019.57638 0.22017 0.00011246 0.6916 0.00035326 0.91176 0.00046572 510.79560869767715 48.44 0.3143 48.068 47.886 48.2 -0.37172 40 15 4 0 0 0 0.012668 2 26036 25936;26036 72.968 30.873 1 31448000 3884 5081 2629 2679 4443;4444 4444 0.06737449197191836 AYINRASLL 9 Unmodified _AYINRASLL_ 0 0 0 nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7964172363281 2 510.795466 1019.57638 0.70088 0.00035801 1.0914 0.00055747 1.7923 0.00091548 510.7958698802235 48.113 0.32 48.074 47.924 48.244 -0.038643 43 15 4 0 0 0 0.0094097 2 26001 25903;26001 82.529 29.11 1 25116000 3885 5081 2629 2679 4445;4446 4446 0.06737449197191836 AYINRASLL 9 Unmodified _AYINRASLL_ 0 0 0 nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7960510253906 2 510.795466 1019.57638 1.0427 0.0005326 -0.08667 -4.4271E-05 0.95603 0.00048833 510.7953557451728 53.826 0.56169 48.022 47.711 48.272 -5.8042 97 34 4 0 0 0 0.012668 2 34141 34005;34141 72.968 30.873 1 190720000 3886 5081 2629 2679 4447;4448 4448 0.06737449197191836 AYIPLNNYLVF 11 Unmodified _AYIPLNNYLVF_ 0 0 0 nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.8584594726562 2 663.858264 1325.70197 1.129 0.00074953 -0.39679 -0.00026341 0.73226 0.00048612 663.8577993094544 100.99 0.12087 94.81 94.748 94.869 -6.1757 14 6 3 0 0 0 0.018566 1 67691 67691 58.679 35.943 1 40446000 3887 5640 2630 2680 4449 4449 0.052151162627069425 AYIQESATF 9 Unmodified _AYIQESATF_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;ENST00000497302.1_1_1:12042112-12052340:+|nuORF ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2486572265625 2 515.248015 1028.48148 0.86064 0.00044344 -0.19612 -0.00010105 0.66452 0.00034239 515.2479518073637 57.154 0.5017 51.165 50.98 51.482 -5.9884 52 28 3 0 0 0 0.1773 1 36483 36483 25.399 11.493 1 66290000 3888 3242 2631 2681 4450 4450 -0.03162529064661612 AYIQGLKEKF 10 Unmodified _AYIQGLKEKF_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5603942871094 3 399.560646 1195.66011 0.68268 0.00027277 -0.50025 -0.00019988 0.18243 7.2893E-05 399.8948928891576 46.901 0.2017 41.82 41.731 41.933 -5.0805 37 26 2 0 0 0 0.052718 1 29019 29019 43.477 23.851 1 26072000 3889 663 2632 2682 4451 4451 0.07010560574212832 AYIQPWRF 8 Unmodified _AYIQPWRF_ 0 0 0 ENSG00000160994|ENST00000292574|CCDC105 ENSG00000160994|ENST00000292574|CCDC105 ENSG00000160994|ENST00000292574|CCDC105 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2877197265625 2 540.784902 1079.55525 0.58838 0.00031819 1.718 0.00092908 2.3064 0.0012473 541.2871960506274 57.774 0.47562 51.747 51.496 51.971 -6.0275 61 26 3 0 0 0 0.77907 1 36983 36983 10.183 1.5901 1 173280000 3890 6776 2633 2683 4452 4452 0.01865483888309427 AYIQQNVSF 9 Unmodified _AYIQQNVSF_ 0 0 0 ENSG00000139370|ENST00000266771|SLC15A4 ENSG00000139370|ENST00000266771|SLC15A4 ENSG00000139370|ENST00000266771|SLC15A4 MSMS AL20221201_MKP_PDAC_01 4 535.2700805664062 2 535.269281 1068.52401 NaN NaN NaN NaN NaN NaN NaN 60.954 1 54.806 54.306 55.306 -6.1478 0 0 0 0.10545 1 39240 39240 42.095 18.074 1 3891 5152 2634 2684 4453 4453 -0.007511339364327796 AYIRKHVQL 9 Unmodified _AYIRKHVQL_ 0 0 0 nc|ENSG00000132437|P20711-4|DDC;nc|ENSG00000132437|P20711-3|DDC;ENSG00000132437|ENST00000444124|DDC nc|ENSG00000132437|P20711-4|DDC nc|ENSG00000132437|P20711-4|DDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5611877441406 3 376.560981 1126.66111 0.10562 3.9772E-05 0.4727 0.000178 0.57832 0.00021777 376.56098486350106 20.905 0.11594 20.916 20.844 20.959 0.010551 9 6 2 0 0 0 0.52844 1 10670 10670 5.7319 1.5423 1 1126300 3892 4407 2635 2685 4454 4454 0.10284819733806216 AYIRLTQYI 9 Unmodified _AYIRLTQYI_ 0 0 0 ENST00000466584.5_1_7:44259663-44260543:-|nuORF;ENST00000523845.5_1_7:44259663-44270619:-|nuORF;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555-6|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-3|CAMK2G;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000058404|Q13554-4|CAMK2B;nc|ENSG00000058404|Q13554-7|CAMK2B;ENST00000489429.5_1_7:44259663-44268887:-|nuORF;ENSG00000058404|ENST00000395749|CAMK2B ENST00000466584.5_1_7:44259663-44260543:-|nuORF ENST00000466584.5_1_7:44259663-44260543:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2955932617188 2 570.824224 1139.63389 1.0478 0.00059808 -0.94102 -0.00053716 0.10673 6.0922E-05 570.8244567170786 66.377 0.17894 66.387 66.321 66.5 0.0095596 14 8 2 0 0 0 0.18882 1 36432 36432 15.847 0 1 1098100 3893 803 2636 2686 4455 4455 0.06966291402773095 AYISLYSYF 9 Unmodified _AYISLYSYF_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.279052734375 2 563.776408 1125.53826 0.49161 0.00027716 -1.9988 -0.0011269 -1.5072 -0.00084971 563.7754741723057 67.258 0.37344 67.258 67.064 67.437 0 31 15 3 0 0 0 0.46577 1 37478 37478 9.3474 2.6243 1 2270900 3894 1928 2637 2687 4456 4456 -0.01948481508156874 AYISLYSYF 9 Unmodified _AYISLYSYF_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.776408 1125.53826 0.79548 0.00044847 -1.2523 -0.00070603 -0.45685 -0.00025756 563.7750004932002 67.882 0.15768 67.4 67.275 67.432 -0.48219 0.071111 0.00064745 NaN 9.3474 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 452080 3895 1928 2637 2687 -0.01948481508156874 AYITGLCFI 9 Carbamidomethyl (C) _AYITGLC(Carbamidomethyl (C))FI_ AYITGLC(1)FI AYITGLC(57)FI 0 1 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN;ENST00000562715.1_1_16:14670117-14678644:-|nuORF;ENST00000563697.5_1_16:14649555-14678249:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2734985351562 2 529.272978 1056.5314 0.61004 0.00032288 -0.064119 -3.3937E-05 0.54592 0.00028894 529.2729577336798 99.922 0.18615 93.747 93.652 93.838 -6.1757 33 13 3 0 0 0 0.027803 1 66648 66648 56.541 18.39 1 209140000 3896 5265 2638 2688 4457 4457 543 0.005398823396262742 AYKDAIYVF 9 Unmodified _AYKDAIYVF_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7858276367188 2 545.2844 1088.55425 -0.31513 -0.00017183 0.77916 0.00042486 0.46403 0.00025303 545.2841926383617 61.464 0.27745 60.974 60.818 61.095 -0.48932 25 12 3 0 0 0 0.30202 1 33446 33446 17.113 4.5813 1 2267900 3897 1724 2639 2689 4458 4458 0.013512247287508217 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8768310546875 3 411.876523 1232.60774 0.3708 0.00015273 0.68797 0.00028336 1.0588 0.00043608 411.8767526245092 49.511 0.27687 49.511 49.352 49.629 0 27 11 3 0 0 0 0.5012 1 27235 27235 16.275 11.227 1 5918400 3898 10645 2640 2690 4459 4459 0.0007397744061563571 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8770446777344 3 411.876523 1232.60774 0.81668 0.00033637 -0.26549 -0.00010935 0.55119 0.00022702 411.8763228174122 49.84 0.32986 49.447 49.277 49.607 -0.3923 50 16 4 0 0 0 0.52659 1 26777 26777 14.957 1.4385 1 12650000 3899 10645 2640 2690 4460 4460 0.0007397744061563571 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8766479492188 3 411.876523 1232.60774 0.55378 0.00022809 -0.59449 -0.00024486 -0.040713 -1.6769E-05 411.8763284574292 49.478 0.23907 49.43 49.31 49.549 -0.048824 21 11 2 0 0 0 0.60478 1 26727 26727 10.899 6.4928 1 2908000 3900 10645 2640 2690 4461 4461 0.0007397744061563571 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8121948242188 2 617.311146 1232.60774 1.065 0.00065745 -0.08483 -5.2366E-05 0.98019 0.00060508 617.3105819787402 54.332 0.26802 48.467 48.339 48.607 -5.8653 22 16 2 0 0 0 0.048223 1 34439 34439 75.571 42.126 1 14732000 3901 10645 2640 2690 4462 4462 0.0007397744061563571 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8768920898438 3 411.876523 1232.60774 1.3558 0.00055844 0.20415 8.4084E-05 1.56 0.00064253 411.8765948767282 54.356 0.42058 48.49 48.247 48.668 -5.8653 63 25 3 0 0 0 0.65891 1 34510 34510 7.4771 7.4771 1 30517000 3902 10645 2640 2690 4463 4463 0.0007397744061563571 AYKDKDISFF 10 Unmodified _AYKDKDISFF_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 411.876523 1232.60774 0.81668 0.00033637 -0.26549 -0.00010935 0.55119 0.00022702 411.8763228174122 49.84 0.32986 49.447 49.277 49.607 -0.3923 -0.015207 -0.0002759 NaN 16.275 50 16 4 NaN NaN NaN NaN 0 NaN NaN 0 12650000 3903 10645 2640 2690 0.0007397744061563571 AYKEEANTI 9 Unmodified _AYKEEANTI_ 0 0 0 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7589721679688 2 519.758746 1037.50294 -0.074804 -3.888E-05 0.23129 0.00012021 0.15648 8.1334E-05 519.7588349794536 22.133 0.23655 22.133 21.988 22.224 0 25 14 2 0 0 0 0.34999 1 11259 11259 14.838 0.93222 1 1285500 3904 8496 2641 2691 4464 4464 -0.014311440359733751 AYKEEANTI 9 Unmodified _AYKEEANTI_ 0 0 0 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 MSMS AL20221201_MKP_PDAC_01 4 519.7567138671875 2 519.758746 1037.50294 NaN NaN NaN NaN NaN NaN NaN 24.917 1 22.034 21.534 22.534 -2.8831 0 0 0 0.3031 1 13598 13598 24.991 8.8419 1 3905 8496 2641 2691 4465 4465 -0.014311440359733751 AYKHPDRI 8 Unmodified _AYKHPDRI_ 0 0 0 REV__ENST00000264485.10_3_4:72052569-72052638:+|nuORF REV__ENST00000264485.10_3_4:72052569-72052638:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.5424499511719 2 500.272158 998.529764 NaN NaN NaN NaN NaN NaN NaN 75.294 1 75.294 74.794 75.794 0 0 0 0 0.97444 1 41886 41886 0.79363 0 1 + 3906 25074 2642 2692 4466 4466 0.030440093658853584 AYKILAHLW 9 Unmodified _AYKILAHLW_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2186584472656 3 372.218443 1113.6335 0.25567 9.5165E-05 -0.53128 -0.00019775 -0.27561 -0.00010259 372.2183196052348 62.316 0.24223 62.283 62.16 62.402 -0.032791 23 12 3 0 0 0 0.023164 1 34060 34060 53.833 44.45 1 15043000 3907 711 2643 2693 4467 4467 0.08122916473553232 AYKILAHLW 9 Unmodified _AYKILAHLW_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2189636230469 3 372.218443 1113.6335 1.7573 0.00065409 -0.44064 -0.00016402 1.3166 0.00049007 372.2183085109267 94.503 0.25877 88.328 88.204 88.463 -6.1757 48 14 4 0 0 0 0.023164 1 62555 62555 53.833 36.72 1 112370000 3908 711 2643 2693 4468 4468 0.08122916473553232 AYKILAHLW 9 Unmodified _AYKILAHLW_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8257446289062 2 557.824027 1113.6335 1.3319 0.00074298 1.2965 0.00072323 2.6284 0.0014662 557.8250219481912 94.51 0.22203 88.334 88.204 88.426 -6.1757 40 12 4 0 0 0 0.010877 1 62573 62573 77.984 58.727 1 66920000 3909 711 2643 2693 4469 4469 0.08122916473553232 AYKKTQETL 9 Unmodified _AYKKTQETL_ 0 0 0 nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 nc|ENSG00000101150|O43399-6|TPD52L2 MSMS AL20221201_MKP_PDAC_01 4 541.2974853515625 2 541.298039 1080.58152 NaN NaN NaN NaN NaN NaN NaN 16.481 1 13.924 13.424 14.424 -2.557 0 0 0 0.348 1 8540 8540 18.146 0 1 3910 16089 2644 2694 4470 4470 0.04445708269145143 AYKLVTVKF 9 Unmodified _AYKLVTVKF_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8866271972656 3 356.886582 1067.63792 0.27002 9.6368E-05 -0.4802 -0.00017138 -0.21017 -7.5008E-05 356.8864418026082 50.933 0.24078 50.88 50.766 51.007 -0.053871 19 11 2 0 0 0 0.10247 1 27567 27567 30.703 17.089 1 2086800 3911 8405 2645 2695 4471 4471 0.10680380896474162 AYKPGALTF 9 Unmodified _AYKPGALTF_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2662658691406 2 484.26601 966.517468 0.85307 0.00041311 -0.21852 -0.00010582 0.63455 0.00030729 484.2658027551642 49.529 0.37072 49.136 49.003 49.374 -0.3923 48 18 4 0 0 0 0.018301 2 26594 26594;26702 65.235 25.278 1 14165000 3912 660 2646 2696 4472;4473 4472 0.03286972902844809 AYKPGALTF 9 Unmodified _AYKPGALTF_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2676086425781 2 484.26601 966.517468 0.56854 0.00027532 0.57401 0.00027797 1.1425 0.0005533 484.2662978656355 49.203 0.27164 49.159 49.004 49.275 -0.04369 30 12 3 0 0 0 0.013041 1 26554 26554 71.922 31.965 1 4404000 3913 660 2646 2696 4474 4474 0.03286972902844809 AYKPGALTF 9 Unmodified _AYKPGALTF_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MSMS AL20221201_MKP_PDAC_01 4 484.2669372558594 2 484.26601 966.517468 NaN NaN NaN NaN NaN NaN NaN 54.633 1 48.768 48.268 49.268 -5.8653 0 0 0 0.014983 1 34681 34681 85.272 43.177 1 3914 660 2646 2696 4475 4475 0.03286972902844809 AYKRMPCACW 10 Unmodified _AYKRMPCACW_ 0 0 0 ENST00000427391.1_1_X:130964518-130964650:-|nuORF ENST00000427391.1_1_X:130964518-130964650:-|nuORF ENST00000427391.1_1_X:130964518-130964650:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7738647460938 2 614.774839 1227.53513 NaN NaN NaN NaN NaN NaN NaN 67.604 1 67.604 67.104 68.104 0 0 0 0 0.96627 1 37698 37698 4.3292 0 1 3915 13191 2647 2697 4476 4476 -0.06954094429806901 AYKYIQELW 9 Unmodified _AYKYIQELW_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.315673828125 2 607.316232 1212.61791 0.53653 0.00032584 -0.62881 -0.00038189 -0.092286 -5.6047E-05 607.3158015408358 67.59 0.29276 67.107 66.939 67.232 -0.48218 42 12 4 0 0 0 0.028475 2 36892 36892;36993 56.177 23.872 1 47531000 3916 8452 2648 2698 4477;4478 4477 0.020105851658399843 AYKYIQELW 9 Unmodified _AYKYIQELW_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.31640625 2 607.316232 1212.61791 0.63604 0.00038628 -0.0047482 -2.8837E-06 0.63129 0.00038339 607.316158069318 67.089 0.34375 67.107 66.895 67.239 0.018028 61 16 5 0 0 0 0.010611 2 36758 36758;36859 78.728 30.382 1 87678000 3917 8452 2648 2698 4479;4480 4479 0.020105851658399843 AYKYIQELW 9 Unmodified _AYKYIQELW_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3158569335938 2 607.316232 1212.61791 0.30252 0.00018373 -0.90385 -0.00054892 -0.60133 -0.0003652 607.3156332488043 82.474 2.2321 76.299 75.227 77.459 -6.1757 387 123 4 0 0 0 0.0086722 10 53683 53551;53683;53802;53933;54048;54175;54307;54434;54568;54715 88.954 41.94 1 229800000 3918 8452 2648 2698 4481;4482;4483;4484;4485;4486;4487;4488;4489;4490 4482 0.020105851658399843 AYLAQSPQL 9 Unmodified _AYLAQSPQL_ 0 0 0 nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1 nc|ENSG00000115866|P14868-2|DARS1 nc|ENSG00000115866|P14868-2|DARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7660522460938 2 495.766374 989.518196 0.24922 0.00012355 -0.68936 -0.00034176 -0.44014 -0.00021821 495.765879096943 58.114 0.28931 52.087 51.923 52.212 -6.0275 26 15 2 0 0 0 0.0088174 1 37166 37166 103.75 47.571 1 27079000 3919 3171 2649 2699 4491 4491 0.023017675519099612 AYLCYRFLF 9 Carbamidomethyl (C) _AYLC(Carbamidomethyl (C))YRFLF_ AYLC(1)YRFLF AYLC(100)YRFLF 0 1 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8121337890625 2 626.812802 1251.61105 0.6303 0.00039508 -0.97806 -0.00061306 -0.34776 -0.00021798 626.8120880859949 98.558 0.16074 92.382 92.293 92.453 -6.1757 28 11 3 0 0 0 0.0088975 1 65366 65366 104.8 68.672 1 98518000 3920 9810 2650 2700 4492 4492 897 -0.004690509864076375 AYLDALQTL 9 Unmodified _AYLDALQTL_ 0 0 0 ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000487070.5_1_2:97281260-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-7|KANSL3;nc|ENSG00000114982|Q9P2N6-8|KANSL3 ENST00000597150.5_1_2:97261350-97297069:-|nuORF ENST00000597150.5_1_2:97261350-97297069:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2739562988281 2 504.274032 1006.53351 0.16319 8.229E-05 1.503 0.00075795 1.6662 0.00084024 504.27433491552443 84.725 0.49077 78.549 78.366 78.857 -6.1757 68 28 3 0 0 0 0.042911 2 55802 55802;55941 48.346 12.302 1 85165000 3921 3076 2651 2701 4493;4494 4493 0.030506343490856125 AYLDKSPQF 9 Unmodified _AYLDKSPQF_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2717895507812 2 534.771657 1067.52876 -0.28279 -0.00015123 0.43954 0.00023505 0.15675 8.3826E-05 534.7720116880456 41.395 0.51125 41.395 41.045 41.556 0 42 25 2 0 0 0 0.0044708 1 22253 22253 118.89 73.195 1 109140000 3922 955 2652 2702 4495 4495 -0.0023024979368528875 AYLDKSPQF 9 Unmodified _AYLDKSPQF_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7715454101562 2 534.771657 1067.52876 -0.38374 -0.00020521 0.81444 0.00043554 0.4307 0.00023033 534.7716742860491 41.751 0.26629 41.444 41.308 41.574 -0.30682 32 12 4 0 0 0 0.0048194 1 22108 22108 117.76 73.988 1 35819000 3923 955 2652 2702 4496 4496 -0.0023024979368528875 AYLDKSPQF 9 Unmodified _AYLDKSPQF_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7708129882812 2 534.771657 1067.52876 NaN NaN NaN NaN NaN NaN NaN 41.883 1 41.577 41.077 42.077 -0.30682 0 0 0 0.15549 1 22218 22218 36.127 14.59 1 3924 955 2652 2702 4497 4497 -0.0023024979368528875 AYLDKSPQF 9 Unmodified _AYLDKSPQF_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.770751953125 2 534.771657 1067.52876 -0.11196 -5.9873E-05 -0.39875 -0.00021324 -0.51071 -0.00027312 534.7710776186846 41.448 0.23417 41.446 41.319 41.553 -0.0017929 17 10 2 0 0 0 0.014417 1 22167 22167 69.105 21.356 1 4495700 3925 955 2652 2702 4498 4498 -0.0023024979368528875 AYLDKSPQF 9 Unmodified _AYLDKSPQF_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7716064453125 2 534.771657 1067.52876 0.78455 0.00041955 0.028268 1.5117E-05 0.81281 0.00043467 534.7709581245051 47.185 0.58809 42.105 41.825 42.414 -5.0805 121 45 4 0 0 0 0.0087923 3 29213 29081;29213;29345 103.42 69.018 1 170950000 3926 955 2652 2702 4499;4500;4501 4500 -0.0023024979368528875 AYLDLENQI 9 Unmodified _AYLDLENQI_ 0 0 0 ENSG00000198483|ENST00000355594|ANKRD35;ANKRD35|p.E742Gfs*24|1|0.27|ENSG00000198483|chr1:145872544-145872545|-/C|frameshift_variant ENSG00000198483|ENST00000355594|ANKRD35 ENSG00000198483|ENST00000355594|ANKRD35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7750244140625 2 539.774396 1077.53424 0.88914 0.00047993 -0.33004 -0.00017815 0.5591 0.00030179 539.7741926669787 71.445 0.3633 71.484 71.279 71.642 0.039024 48 16 4 0 0 0 0.2143 1 39286 39286 21.747 0 1 10461000 3927 10095 2653 2703 4502 4502 -0.001425710018565951 AYLDNLQAF 9 Unmodified _AYLDNLQAF_ 0 0 0 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7640991210938 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 71.424 1 71.424 70.924 71.924 0 0 0 0 0.6032 1 39784 39784 12.532 5.2423 1 3928 9118 2654 2704 4503 4503 -0.011505363107289668 AYLDSTERF 9 Unmodified _AYLDSTERF_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7650756835938 2 551.264196 1100.51384 -0.10547 -5.8139E-05 -0.47941 -0.00026428 -0.58487 -0.00032242 551.2636715619687 41.595 0.28926 41.595 41.441 41.731 0 39 14 4 0 0 0 0.0086722 1 22416 22416 88.954 50.98 1 50796000 3929 7461 2655 2705 4504 4504 -0.03239741661673179 AYLDSTERF 9 Unmodified _AYLDSTERF_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2627563476562 2 551.264196 1100.51384 1.4388 0.00079316 -2.1387 -0.001179 -0.69994 -0.00038585 551.2626833296127 47.499 0.69197 42.265 42 42.692 -5.2339 80 41 3 0 0 0 0.013041 2 29442 29442;29571 71.922 39.137 1 42871000 3930 7461 2655 2705 4505;4506 4505 -0.03239741661673179 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.75341796875 2 540.753464 1079.49238 -0.32296 -0.00017464 -0.68694 -0.00037147 -1.0099 -0.00054611 540.752975022651 41.43 0.32761 41.43 41.261 41.589 0 67 16 5 0 0 0 0.00856 2 22279 22279;22397 100.37 68.066 1 554110000 3931 2795 2656 2706 4507;4508 4507 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7534790039062 2 540.753464 1079.49238 -0.50346 -0.00027225 1.1209 0.00060615 0.61747 0.0003339 540.7539359321013 41.744 0.18007 41.437 41.355 41.535 -0.30682 16 8 3 0 0 0 0.0090851 1 22129 22129 85.357 33.088 1 6336400 3932 2795 2656 2706 4509 4509 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7525634765625 2 540.753464 1079.49238 -0.12665 -6.8485E-05 -0.50963 -0.00027558 -0.63628 -0.00034407 540.7533052222838 41.461 0.21456 41.459 41.338 41.553 -0.0017929 16 9 2 0 0 0 0.010877 1 22168 22168 77.984 45.679 1 5487000 3933 2795 2656 2706 4510 4510 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.25537109375 2 540.753464 1079.49238 0.46721 0.00025264 -0.29557 -0.00015983 0.17164 9.2813E-05 540.7533197319625 46.996 0.57215 41.915 41.624 42.196 -5.0805 213 69 4 0 0 0 0.0088975 3 28925 28925;29054;29193 104.8 68.672 1 606450000 3934 2795 2656 2706 4511;4512;4513 4511 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MSMS AL20221201_MKP_PDAC_01 4 540.75439453125 2 540.753464 1079.49238 NaN NaN NaN NaN NaN NaN NaN 47.297 1 42.216 41.716 42.716 -5.0805 0 0 0 0.15618 1 29341 29341 36.044 1.9418 1 3935 2795 2656 2706 4514 4514 -0.0441912669039084 AYLEAHETF 9 Unmodified _AYLEAHETF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1080.745971679688 1 1080.49965 1079.49238 0.52429 0.00056649 1.3321 0.0014394 1.8564 0.0020059 1081.5051133879185 47.037 0.05719 41.957 41.933 41.99 -5.0805 6 4 2 0 0 0 0.0065389 1 29165 29165 108 68.047 1 19713000 3936 2795 2656 2706 4515 4515 -0.0441912669039084 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.271484375 2 539.271824 1076.5291 -0.51385 -0.0002771 -0.057035 -3.0758E-05 -0.57088 -0.00030786 539.2717603235201 55.65 0.42238 55.65 55.414 55.836 0 118 33 4 0 0 0 0.013323 1 30942 30942 71.134 42.647 1 142310000 3937 664 2657 2707 4516 4516 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2705078125 2 539.271824 1076.5291 NaN NaN NaN NaN NaN NaN NaN 55.875 1 55.875 55.375 56.375 0 0 0 0 0.53226 1 31055 31055 14.838 1.7958 1 3938 664 2657 2707 4517 4517 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.27001953125 2 539.271824 1076.5291 -0.87455 -0.00047162 0.034946 1.8845E-05 -0.8396 -0.00045277 539.2718186969196 56.183 0.41093 55.697 55.471 55.882 -0.48554 74 20 5 0 0 0 0.00856 3 30425 30421;30425;30523 100.37 69.735 1 430100000 3939 664 2657 2707 4518;4519;4520 4519 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2721557617188 2 539.271824 1076.5291 -0.35691 -0.00019247 -0.058506 -3.1551E-05 -0.41541 -0.00022402 539.271758756514 55.835 0.27746 55.767 55.646 55.924 -0.068737 36 14 3 0 0 0 0.0018186 2 30319 30319;30428 133.7 95.728 1 27229000 3940 664 2657 2707 4521;4522 4521 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2722778320312 2 539.271824 1076.5291 0.59736 0.00032214 0.07504 4.0467E-05 0.6724 0.00036261 539.2718335701104 61.89 1.4147 55.714 55.208 56.623 -6.1757 184 75 4 0 0 0 0.00856 5 39894 39767;39894;40026;40158;40301 100.37 62.397 1 1398600000 3941 664 2657 2707 4523;4524;4525;4526;4527 4524 -0.006108300738333128 AYLEAIHNF 9 Unmodified _AYLEAIHNF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1078.605102539062 1 1077.53637 1076.5291 0.53257 0.00057386 -0.20312 -0.00021887 0.32945 0.000355 1077.536326239385 61.89 0.33227 55.714 55.557 55.89 -6.1757 27 17 2 0 0 0 0.0030184 1 39827 39827 126.57 90.06 1 32288000 3942 664 2657 2707 4528 4528 -0.006108300738333128 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2789306640625 2 567.279315 1132.54408 0.27564 0.00015637 -2.2484 -0.0012755 -1.9727 -0.0011191 567.2778115840141 51.719 0.32539 51.719 51.583 51.908 0 43 14 4 0 0 0 0.067618 1 28548 28548 51.63 15.503 1 60177000 3943 5129 2658 2708 4529 4529 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2802124023438 2 567.279315 1132.54408 NaN NaN NaN NaN NaN NaN NaN 52.301 1 51.867 51.367 52.367 -0.43367 0 0 0 0.089774 1 28244 28244 57.722 19.546 1 3944 5129 2658 2708 4530 4530 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2789916992188 2 567.279315 1132.54408 0.57991 0.00032897 0.66388 0.0003766 1.2438 0.00070558 567.278913752581 52.031 0.33474 51.973 51.854 52.189 -0.058918 25 15 3 0 0 0 0.13639 1 28168 28168 38.176 14.155 1 4359600 3945 5129 2658 2708 4531 4531 -0.01689382996482891 AYLEAYKEF 9 Unmodified _AYLEAYKEF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2791137695312 2 567.279315 1132.54408 0.81076 0.00045992 0.76384 0.00043331 1.5746 0.00089324 567.2786761211421 58.245 0.78607 52.218 51.736 52.522 -6.0275 113 43 4 0 0 0 0.08907 2 37365 37365;37492 45.7 21.679 1 258330000 3946 5129 2658 2708 4532;4533 4532 -0.01689382996482891 AYLECSARL 9 Carbamidomethyl (C) _AYLEC(Carbamidomethyl (C))SARL_ AYLEC(1)SARL AYLEC(60)SARL 0 1 0 ENSG00000173156|ENST00000308831|RHOD ENSG00000173156|ENST00000308831|RHOD ENSG00000173156|ENST00000308831|RHOD MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7684326171875 2 541.768591 1081.52263 0.226 0.00012244 -0.20838 -0.00011289 0.017625 9.5488E-06 541.7682398453612 45.217 0.36508 40.262 40.099 40.464 -4.9549 44 24 2 0 0 0 0.023481 1 27660 27660 60.074 20.117 1 41713000 3947 8292 2659 2709 4534 4534 794 -0.014870912968490302 AYLEQLESL 9 Unmodified _AYLEQLESL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2777099609375 2 533.276772 1064.53899 0.4956 0.00026429 -0.074869 -3.9926E-05 0.42073 0.00022437 533.2767288549179 72.767 0.3812 72.767 72.585 72.966 0 60 18 4 0 0 0 0.087258 1 40473 40473 36.044 9.1605 1 20613000 3948 1109 2660 2710 4535 4535 0.009303131409069465 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2897338867188 2 584.289682 1166.56481 -0.062105 -3.6287E-05 -0.82644 -0.00048288 -0.88855 -0.00051917 584.2891089679263 70.09 0.62674 69.611 69.363 69.99 -0.47903 96 33 4 0 0 0 0.010611 2 38241 38241;38341 78.728 31.134 1 115930000 3949 6670 2661 2711 4536;4537 4536 -0.011807926168103222 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2896118164062 2 584.289682 1166.56481 0.79223 0.00046289 -0.96039 -0.00056115 -0.16816 -9.8254E-05 584.2890185947283 69.38 0.49962 69.411 69.111 69.611 0.030914 91 27 5 0 0 0 0.0082353 2 38075 38075;38181 96.111 34.509 1 727960000 3950 6670 2661 2711 4538;4539 4538 -0.011807926168103222 AYLESFYKF 9 Unmodified _AYLESFYKF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2899169921875 2 584.289682 1166.56481 0.52425 0.00030631 0.36261 0.00021187 0.88685 0.00051818 584.2897812372261 82.505 1.9034 76.329 75.288 77.192 -6.1757 373 106 5 0 0 0 0.0086722 10 54719 53526;53653;53778;53911;54036;54163;54296;54432;54566;54719 88.954 78.728 1 443550000 3951 6670 2661 2711 4540;4541;4542;4543;4544;4545;4546;4547;4548;4549 4549 -0.011807926168103222 AYLESFYKFC 10 Carbamidomethyl (C) _AYLESFYKFC(Carbamidomethyl (C))_ AYLESFYKFC(1) AYLESFYKFC(46) 0 1 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3060913085938 2 664.305007 1326.59546 0.9394 0.00062405 -0.14526 -9.6499E-05 0.79413 0.00052755 664.305076177262 66.973 0.20699 66.991 66.895 67.102 0.018028 23 9 3 0 0 0 0.10424 1 36775 36775 45.7 29.551 1 4405900 3952 6670 2662 2712 4550 4550 657 -0.054773822940660466 AYLFLQSTF 9 Unmodified _AYLFLQSTF_ 0 0 0 nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2841186523438 2 545.2844 1088.55425 0.7656 0.00041747 -0.49362 -0.00026916 0.27199 0.00014831 545.2843304698945 90.853 0.19016 90.889 90.793 90.983 0.036507 15 6 3 0 0 0 0.03327 1 50558 50558 53.576 23.351 1 2912300 3953 3977 2663 2713 4551 4551 0.013512247287508217 AYLGKMWVF 9 Unmodified _AYLGKMWVF_ 0 0 0 ENSG00000204421|ENST00000375819|LY6G6C ENSG00000204421|ENST00000375819|LY6G6C ENSG00000204421|ENST00000375819|LY6G6C MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.79248046875 2 557.791338 1113.56812 1.3763 0.00076771 -0.33555 -0.00018717 1.0408 0.00058054 557.7906160491785 98.005 0.12617 91.83 91.765 91.891 -6.1757 18 7 3 0 0 0 0.026094 1 64986 64986 57.471 35.725 1 18769000 3954 10281 2664 2714 4552 4552 0.01588178956194497 AYLGLPAFL 9 Unmodified _AYLGLPAFL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5504760742188 1 964.550231 963.542954 0.7925 0.00076441 0.63808 0.00061546 1.4306 0.0013799 964.5508437597853 101.38 0.096107 95.201 95.178 95.274 -6.1757 7 4 2 0 0 0 0.0081202 1 68031 68031 93.763 19.366 1 15092000 3955 1832 2665 2715 4553 4553 0.059724474252675464 AYLHSHALI 9 Unmodified _AYLHSHALI_ 0 0 0 ENSG00000135090|ENST00000392533|TAOK3;ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENSG00000135090|ENST00000392533|TAOK3 ENSG00000135090|ENST00000392533|TAOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7826538085938 2 512.782359 1023.55016 0.45094 0.00023124 0.12361 6.3384E-05 0.57455 0.00029462 512.7823568981836 39.667 0.23169 35.217 35.107 35.339 -4.4509 25 14 2 0 0 0 0.0077963 1 23591 23591 109.63 65.222 1 8480700 3956 4669 2666 2716 4554 4554 0.03933180025705951 AYLHSHALI 9 Unmodified _AYLHSHALI_ 0 0 0 ENSG00000135090|ENST00000392533|TAOK3;ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENSG00000135090|ENST00000392533|TAOK3 ENSG00000135090|ENST00000392533|TAOK3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.782359 1023.55016 -0.51312 -0.00026312 -1.9549 -0.0010024 -2.468 -0.0012655 512.7813771337801 35.476 0.13691 35.253 35.151 35.288 -0.2224 0.018436 -0.0018657 NaN 109.63 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1598700 3957 4669 2666 2716 0.03933180025705951 AYLHSHNMI 9 Oxidation (M) _AYLHSHNM(Oxidation (M))I_ AYLHSHNM(1)I AYLHSHNM(42)I 0 0 1 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8432922363281 3 367.843048 1100.50731 0.90436 0.00033266 -0.011716 -4.3095E-06 0.89264 0.00032835 367.8430112815973 22.782 0.44046 20.003 19.792 20.232 -2.7784 79 31 3 0 0 0 0.060956 1 12301 12301 42.312 22.951 1 11531000 3958 6045;16263 2667 2717 4555 4555 1076 -0.038919580940500964 AYLHSHNMI 9 Unmodified _AYLHSHNMI_ 0 0 0 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8462829589844 3 362.51141 1084.5124 1.4457 0.00052407 -0.41512 -0.00015048 1.0305 0.00037359 362.51136889467523 31.941 0.34166 28.245 28.086 28.428 -3.6958 38 18 3 0 0 0 0.016184 1 18128 18128 60.074 43.925 1 20482000 3959 6045;16263 2667 2718 4556 4556 -0.02647654231418528 AYLHTTTTF 9 Unmodified _AYLHTTTTF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7649536132812 2 527.763832 1053.51311 0.019944 1.0526E-05 -0.48565 -0.00025631 -0.4657 -0.00024578 527.7635633160208 40.725 0.3293 40.725 40.51 40.839 0 52 22 3 0 0 0 0.019979 2 21828 21828;21936 63.563 45.428 1 259350000 3960 2613 2668 2719 4557;4558 4557 -0.011505363107289668 AYLHTTTTF 9 Unmodified _AYLHTTTTF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.763671875 2 527.763832 1053.51311 0.048126 2.5399E-05 -0.31101 -0.00016414 -0.26288 -0.00013874 527.7636632829615 41.178 0.45476 40.875 40.678 41.132 -0.30304 52 21 4 0 0 0 0.012158 2 21837 21728;21837 74.396 58.549 1 399560000 3961 2613 2668 2719 4559;4560 4560 -0.011505363107289668 AYLHTTTTF 9 Unmodified _AYLHTTTTF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7638549804688 2 527.763832 1053.51311 0.30959 0.00016339 0.44656 0.00023568 0.75614 0.00039907 527.7641028547304 40.843 0.29752 40.842 40.711 41.008 -0.0017929 43 14 4 0 0 0 0.0094915 1 21756 21756 81.864 63.729 1 37449000 3962 2613 2668 2719 4561 4561 -0.011505363107289668 AYLHTTTTF 9 Unmodified _AYLHTTTTF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7642822265625 2 527.763832 1053.51311 0.53877 0.00028435 0.28805 0.00015202 0.82683 0.00043637 527.7635818250286 46.278 0.62664 41.323 40.936 41.563 -4.9549 140 44 5 0 0 0 0.0086179 3 28377 28377;28516;28655 89.427 59.202 1 2118799999.9999998 3963 2613 2668 2719 4562;4563;4564 4562 -0.011505363107289668 AYLIDHQRL 9 Unmodified _AYLIDHQRL_ 0 0 0 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 MSMS AL20221201_MKP_PDAC_01 4 376.8777770996094 3 376.876857 1127.60874 NaN NaN NaN NaN NaN NaN NaN 41.316 1 36.708 36.208 37.208 -4.6079 0 0 0 0.15549 1 24796 24796 33.445 17.706 1 3964 9476 2669 2720 4565 4565 0.050042366001889604 AYLIQVHKW 9 Unmodified _AYLIQVHKW_ 0 0 0 ENSG00000110536|ENST00000326674|PTPMT1;ENST00000534775.1_1_11:47587445-47593178:+|nuORF ENSG00000110536|ENST00000326674|PTPMT1 ENSG00000110536|ENST00000326674|PTPMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5533752441406 3 386.553715 1156.63931 0.16977 6.5626E-05 -0.18763 -7.253E-05 -0.017861 -6.9043E-06 386.5534500647623 48.926 0.37862 48.883 48.714 49.093 -0.04369 48 17 5 0 0 0 0.16226 1 26386 26386 24.991 12.75 1 26490000 3965 2725 2670 2721 4566 4566 0.06726014985224538 AYLIQVHKW 9 Unmodified _AYLIQVHKW_ 0 0 0 ENSG00000110536|ENST00000326674|PTPMT1;ENST00000534775.1_1_11:47587445-47593178:+|nuORF ENSG00000110536|ENST00000326674|PTPMT1 ENSG00000110536|ENST00000326674|PTPMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.32666015625 2 579.326934 1156.63931 0.58885 0.00034114 -0.96851 -0.00056108 -0.37966 -0.00021995 579.3261660492219 48.932 0.19208 48.889 48.772 48.964 -0.04369 15 9 2 0 0 0 0.070838 1 26425 26425 39.957 16.809 1 2325400 3966 2725 2670 2721 4567 4567 0.06726014985224538 AYLKAIIFF 9 Unmodified _AYLKAIIFF_ 0 0 0 nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000101076|P41235-7|HNF4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8247680664062 2 543.323328 1084.6321 0.90078 0.00048942 -0.1105 -6.0038E-05 0.79028 0.00042938 543.3232525499571 91.085 0.63185 91.122 90.954 91.586 0.036499 38 23 2 0 0 0 0.042911 2 50665 50665;50797 48.346 22.078 1 9111400 3967 1908 2671 2722 4568;4569 4568 0.09317282384790815 AYLKAIIFF 9 Unmodified _AYLKAIIFF_ 0 0 0 nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000101076|P41235-7|HNF4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3233642578125 2 543.323328 1084.6321 0.72096 0.00039171 -0.60191 -0.00032703 0.11904 6.4679E-05 543.3222343966954 99.955 0.14031 93.779 93.715 93.855 -6.1757 17 9 2 0 0 0 0.052168 1 66729 66729 44.407 26.261 1 74968000 3968 1908 2671 2722 4570 4570 0.09317282384790815 AYLKAIVLF 9 Unmodified _AYLKAIVLF_ 0 0 0 ENSG00000120798|ENST00000333003|NR2C1;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2 ENSG00000120798|ENST00000333003|NR2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3234252929688 2 519.323328 1036.6321 1.3136 0.00068217 -0.61104 -0.00031733 0.70253 0.00036484 519.3229790385604 82.32 1.129 82.382 82.175 83.304 0.062004 120 43 4 0 0 0 0.031062 5 45486 45486;45589;45695;45794;45909 54.774 21.988 1 98450000 3969 3540;8685 2672 2723 4571;4572;4573;4574;4575 4571 0.11525282384764068 AYLKAIVLF 9 Unmodified _AYLKAIVLF_ 0 0 0 ENSG00000120798|ENST00000333003|NR2C1;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF ENSG00000120798|ENST00000333003|NR2C1;ENSG00000177463|ENST00000425241|NR2C2 ENSG00000120798|ENST00000333003|NR2C1 MSMS AL20221201_MKP_PDAC_01 4 519.323486328125 2 519.323328 1036.6321 NaN NaN NaN NaN NaN NaN NaN 98.559 1 92.383 91.883 92.883 -6.1757 0 0 0 0.056448 1 65389 65389 54.774 16.598 1 3970 3540;8685 2672 2723 4576 4576 0.11525282384764068 AYLKDLQKL 9 Unmodified _AYLKDLQKL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.5538024902344 3 364.553492 1090.63865 NaN NaN NaN NaN NaN NaN NaN 43.342 1 43.031 42.531 43.531 -0.31039 0 0 0 0.020219 1 23056 23056 61.602 21.363 1 3971 2544 2673 2724 4577 4577 0.09695175545516577 AYLKDLQKL 9 Unmodified _AYLKDLQKL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5538330078125 3 364.553492 1090.63865 1.2969 0.00047279 0.048167 1.7559E-05 1.3451 0.00049035 364.55351488119214 48.187 0.40141 42.953 42.74 43.142 -5.2339 55 23 3 0 0 0 0.015445 2 29909 29909;30037 61.602 37.801 1 30512000 3972 2544 2673 2724 4578;4579 4578 0.09695175545516577 AYLKDLQKL 9 Unmodified _AYLKDLQKL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 364.553492 1090.63865 0.33632 0.00012261 -1.1105 -0.00040485 -0.77423 -0.00028225 364.553057692595 43.163 0.19855 43.163 43.006 43.204 0 0.13911 -0.0010989 NaN 61.602 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2569700 3973 2544 2673 2724 0.09695175545516577 AYLKDLQKL 9 Unmodified _AYLKDLQKL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 364.553492 1090.63865 0.53538 0.00019518 -0.060848 -2.2182E-05 0.47454 0.00017299 364.55345086618956 42.971 0.17763 42.955 42.843 43.02 -0.015667 -0.068687 4.9086E-05 NaN 61.602 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1839000 3974 2544 2673 2724 0.09695175545516577 AYLKEVEQL 9 Unmodified _AYLKEVEQL_ 0 0 0 ENST00000476672.1_1_3:180675662-180688154:+|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1 ENST00000476672.1_1_3:180675662-180688154:+|nuORF ENST00000476672.1_1_3:180675662-180688154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.80224609375 2 546.800414 1091.58628 0.4292 0.00023468 0.8034 0.0004393 1.2326 0.00067399 546.8008118777377 47.301 0.36897 47.301 47.081 47.45 0 28 16 2 0 0 0 0.011671 2 25841 25841;25961 75.761 11.8 1 30806000 3975 3037 2674 2725 4580;4581 4580 0.04414592411899321 AYLKEVEQL 9 Unmodified _AYLKEVEQL_ 0 0 0 ENST00000476672.1_1_3:180675662-180688154:+|nuORF;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1 ENST00000476672.1_1_3:180675662-180688154:+|nuORF ENST00000476672.1_1_3:180675662-180688154:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8018798828125 2 546.800414 1091.58628 0.64995 0.0003554 0.58501 0.00031988 1.235 0.00067528 546.8006349269706 53.392 0.3459 47.588 47.383 47.729 -5.8042 40 21 2 0 0 0 0.013041 2 33806 33650;33806 71.922 18.089 1 67329000 3976 3037 2674 2725 4582;4583 4583 0.04414592411899321 AYLKFLDQF 9 Unmodified _AYLKFLDQF_ 0 0 0 ENST00000571710.5_1_17:1945525-1946395:+|nuORF;nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF ENST00000571710.5_1_17:1945525-1946395:+|nuORF ENST00000571710.5_1_17:1945525-1946395:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8062744140625 2 572.8055 1143.59645 1.5634 0.00089552 -0.060919 -3.4895E-05 1.5025 0.00086063 572.8053219848266 97.435 0.28523 91.259 91.117 91.403 -6.1757 40 15 3 0 0 0 0.030212 1 64557 64557 69.105 31.131 1 44263000 3977 15491 2675 2726 4584 4584 0.03039200137118314 AYLKLRNWQW 10 Unmodified _AYLKLRNWQW_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;ENST00000473022.1_1_22:36698592-36700051:-|nuORF;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2544250488281 3 459.919056 1376.73534 0.86657 0.00039855 -1.1955 -0.00054984 -0.32896 -0.00015129 459.9183009755785 91.374 0.25448 85.199 85.076 85.331 -6.1757 24 13 3 0 0 0 0.46077 2 60381 60381;60422 18.373 7.3078 1 13129000 3978 1800;4510 2676 2727 4585;4586 4585 0.06204162825315507 AYLKQVLLF 9 Unmodified _AYLKQVLLF_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.834228515625 2 547.83406 1093.65357 0.16035 8.7844E-05 0.59045 0.00032347 0.7508 0.00041131 547.8342724532813 77.54 0.32587 77.59 77.395 77.721 0.05011 37 13 4 0 0 0 0.036857 1 42762 42762 67.344 18.998 1 12082000 3979 10164 2677 2728 4587 4587 0.11048667413501789 AYLKWISQI 9 Unmodified _AYLKWISQI_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7870483398438 2 561.321317 1120.62808 0.68741 0.00038586 -0.86265 -0.00048423 -0.17525 -9.837E-05 561.3209614941202 73.514 0.36174 73.558 73.292 73.654 0.043976 44 15 4 0 0 0 0.17666 1 40512 40512 19.439 5.9311 1 2779500 3980 4681 2678 2729 4588 4588 0.07259192891092425 AYLKYIEGL 9 Unmodified _AYLKYIEGL_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3017578125 2 535.30005 1068.58555 0.61594 0.00032971 2.9378 0.0015726 3.5537 0.0019023 535.301995011732 64.329 0.23222 63.844 63.739 63.971 -0.48512 17 10 2 0 0 0 0.047196 1 35096 35096 46.021 16.939 1 1153100 3981 7101 2679 2730 4589 4589 0.05399797762856906 AYLLKCHEL 9 Carbamidomethyl (C) _AYLLKC(Carbamidomethyl (C))HEL_ AYLLKC(1)HEL AYLLKC(60)HEL 0 1 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8034057617188 2 573.802434 1145.59032 1.734 0.00099495 -0.28716 -0.00016477 1.4468 0.00083018 573.80272859596 41.711 0.3104 37.103 36.952 37.262 -4.6079 41 19 3 0 0 0 0.023481 1 25051 25051 60.074 27.288 1 12105000 3982 3945 2680 2731 4590 4590 396 0.02334358633947886 AYLLNLNHL 9 Unmodified _AYLLNLNHL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.8032836914062 2 535.803291 1069.59203 0.28649 0.0001535 -0.24878 -0.0001333 0.037709 2.0205E-05 535.8031092940724 70.795 0.37123 70.317 70.112 70.483 -0.47735 64 19 4 0 0 0 0.0086179 2 38661 38661;38763 89.427 45.02 1 49164000 3983 950 2681 2732 4591;4592 4591 0.06001735714221468 AYLLNLNHL 9 Unmodified _AYLLNLNHL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8027954101562 2 535.803291 1069.59203 0.47953 0.00025693 -0.29063 -0.00015572 0.18889 0.00010121 535.8030980917541 70.173 0.54607 70.208 69.98 70.526 0.035507 109 26 7 0 0 0 0.013472 2 38559 38559;38674 70.716 34.671 1 152500000 3984 950 2681 2732 4593;4594 4593 0.06001735714221468 AYLLNLNHL 9 Unmodified _AYLLNLNHL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.803466796875 2 535.803291 1069.59203 0.509 0.00027272 0.032452 1.7388E-05 0.54145 0.00029011 535.8033930739791 82.321 2.1173 76.146 75.227 77.345 -6.1757 327 117 4 0 0 0 0.0094915 9 53571 53571;53707;53828;53960;54091;54225;54356;54677;54836 81.864 43.713 1 137410000 3985 950 2681 2732 4595;4596;4597;4598;4599;4600;4601;4602;4603 4595 0.06001735714221468 AYLLTLGKF 9 Unmodified _AYLLTLGKF_ 0 0 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2 nc|ENSG00000055163|Q96F07|CYFIP2 nc|ENSG00000055163|Q96F07|CYFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3057250976562 2 513.305136 1024.59572 0.48958 0.00025131 0.67782 0.00034793 1.1674 0.00059923 513.305452250013 74.839 0.27692 74.885 74.728 75.004 0.045959 28 12 3 0 0 0 0.024882 1 41252 41252 58.679 0 1 3728200 3986 775 2682 2733 4604 4604 0.08440405488067881 AYLMMELL 8 Unmodified _AYLMMELL_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2507934570312 2 492.250657 982.486761 NaN NaN NaN NaN NaN NaN NaN 75.787 1 75.31 74.81 75.81 -0.47714 0 0 0 0.9706 1 41487 41487 6.3541 0 1 + 3987 20387 2683 2734 4605 4605 -0.005182647980404909 AYLNITKHL 9 Unmodified _AYLNITKHL_ 0 0 0 ENST00000508867.5_1_5:74842847-74877278:+|nuORF;ENST00000506928.5_1_5:74842847-74879138:+|nuORF;nc|ENSG00000122008|Q9UBT6-7|POLK;nc|ENSG00000122008|Q9UBT6-4|POLK;nc|ENSG00000122008|Q9UBT6-6|POLK;nc|ENSG00000122008|Q9UBT6-2|POLK;nc|ENSG00000122008|Q9UBT6-5|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;ENSG00000122008|ENST00000241436|POLK ENST00000508867.5_1_5:74842847-74877278:+|nuORF ENST00000508867.5_1_5:74842847-74877278:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2108154296875 3 358.209836 1071.60768 1.1159 0.00039971 -0.262 -9.3853E-05 0.85385 0.00030586 358.209783825072 46.502 0.17872 41.421 41.29 41.468 -5.0805 28 17 2 0 0 0 0.024882 1 28709 28709 53.404 31.814 1 40166000 3988 3615 2684 2735 4606 4606 0.07474022231258459 AYLPEWKENI 10 Unmodified _AYLPEWKENI_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.8235473632812 2 631.824421 1261.63429 0.32577 0.00020583 -0.71174 -0.00044969 -0.38597 -0.00024387 632.3253349494315 59.452 0.20293 59.452 59.329 59.532 0 15 8 2 0 0 0 0.25982 1 33097 33097 29.841 9.426 1 2341800 3989 10089 2685 2736 4607 4607 0.01393666331955501 AYLPEWKENI 10 Unmodified _AYLPEWKENI_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8226318359375 2 631.824421 1261.63429 -0.15804 -9.9856E-05 -0.54601 -0.00034498 -0.70405 -0.00044484 631.8247041377826 60.105 0.21897 59.614 59.49 59.708 -0.49079 24 10 3 0 0 0 0.046375 1 32695 32695 60.074 23.947 1 9391900 3990 10089 2685 2736 4608 4608 0.01393666331955501 AYLPEWKENI 10 Unmodified _AYLPEWKENI_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.8250122070312 2 631.824421 1261.63429 0.60645 0.00038317 -0.60286 -0.0003809 0.0035871 2.2664E-06 631.8238610960356 67.252 0.64072 61.076 60.698 61.339 -6.1757 78 35 3 0 0 0 0.0055438 3 43757 43630;43757;43883 96.936 36.862 1 36209000 3991 10089 2685 2736 4609;4610;4611 4610 0.01393666331955501 AYLPHTFWI 9 Unmodified _AYLPHTFWI_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.8385009765625 2 574.300384 1146.58622 1.6612 0.00095403 -0.38951 -0.0002237 1.2717 0.00073033 574.8014606952031 98.268 0.10617 92.093 92.042 92.148 -6.1757 11 6 2 0 0 0 0.023371 1 65162 65162 48.346 25.197 1 16640000 3992 5680 2686 2737 4612 4612 0.018786372025488163 AYLPKILQI 9 Unmodified _AYLPKILQI_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8343505859375 2 529.83406 1057.65357 0.3108 0.00016467 0.10095 5.3486E-05 0.41175 0.00021816 529.8341527259448 78.237 0.56275 78.289 78.063 78.625 0.052452 61 23 4 0 0 0 0.012148 2 43165 43165;43272 74.423 0 1 18461000 3993 3541 2687 2738 4613;4614 4613 0.12704667413527204 AYLPKILQI 9 Unmodified _AYLPKILQI_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8344116210938 2 529.83406 1057.65357 1.3494 0.00071494 -0.050119 -2.6555E-05 1.2993 0.00068839 529.8340228017103 96.676 0.3511 90.5 90.305 90.656 -6.1757 51 20 3 0 0 0 0.0095811 2 64013 64013;64135 81.613 0 1 137030000 3994 3541 2687 2738 4615;4616 4615 0.12704667413527204 AYLPKMMTL 9 2 Oxidation (M) _AYLPKM(Oxidation (M))M(Oxidation (M))TL_ AYLPKM(1)M(1)TL AYLPKM(52)M(52)TL 0 0 2 ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA ENSG00000011007|ENST00000613537|ELOA ENSG00000011007|ENST00000613537|ELOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2806396484375 2 550.279946 1098.54534 0.02897 1.5942E-05 -1.1387 -0.0006266 -1.1097 -0.00061066 550.2797443594369 38.608 0.4302 38.322 38.154 38.585 -0.28687 54 20 4 0 0 0 0.03568 2 20304 20304;20405 52.268 18.166 1 7944700 3995 430 2688 2739 4617;4618 4617 52;53 7.917764378362335E-06 AYLPVNESF 9 Unmodified _AYLPVNESF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2578125 2 520.258382 1038.50221 0.32422 0.00016868 -0.90892 -0.00047287 -0.5847 -0.00030419 520.2577681396816 64.58 0.66631 64.58 64.235 64.901 0 95 31 4 0 0 0 0.015445 3 36018 35914;36018;36122 68.081 33.451 1 258640000 3996 7651 2689 2740 4619;4620;4621 4620 -0.015499386850024166 AYLPVNESF 9 Unmodified _AYLPVNESF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.258544921875 2 520.258382 1038.50221 0.21509 0.0001119 0.20851 0.00010848 0.4236 0.00022038 520.2583831322353 65.171 0.48959 64.687 64.448 64.938 -0.48428 86 22 5 0 0 0 0.12841 2 35581 35474;35581 30.225 6.2061 1 78367000 3997 7651 2689 2740 4622;4623 4623 -0.015499386850024166 AYLPVNESF 9 Unmodified _AYLPVNESF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.258544921875 2 520.258382 1038.50221 0.65984 0.00034329 0.53102 0.00027627 1.1909 0.00061955 520.2586598495469 64.658 0.31789 64.658 64.501 64.818 7.6294E-06 39 15 3 0 0 0 0.078417 1 35394 35394 38.151 5.8457 1 8951200 3998 7651 2689 2740 4624 4624 -0.015499386850024166 AYLPVNESF 9 Unmodified _AYLPVNESF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2587890625 2 520.258382 1038.50221 1.1928 0.00062058 -0.4611 -0.00023989 0.73174 0.0003807 520.2581174578903 71.753 0.56328 65.578 65.281 65.844 -6.1757 101 30 4 0 0 0 0.038285 3 46808 46808;46944;47079 50.855 16.405 1 1139200000 3999 7651 2689 2740 4625;4626;4627 4625 -0.015499386850024166 AYLPVNESFGF 11 Unmodified _AYLPVNESFGF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.3038330078125 2 622.303321 1242.59209 0.30016 0.00018679 1.2448 0.00077463 1.5449 0.00096142 622.3044540457375 85.18 0.28043 85.18 85.082 85.363 0 15 12 2 0 0 0 0.67371 1 47219 47219 6.7232 2.3939 1 519370 4000 7651 2690 2741 4628 4628 -0.01950309076460144 AYLPVNESFGF 11 Unmodified _AYLPVNESFGF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.30517578125 2 622.303321 1242.59209 0.4628 0.000288 1.3062 0.00081285 1.769 0.0011009 622.3040541910684 85.723 0.41238 85.222 85.057 85.469 -0.5015 64 21 4 0 0 0 0.37677 2 46953 46852;46953 22.736 8.4331 1 10105000 4001 7651 2690 2741 4629;4630 4630 -0.01950309076460144 AYLPVNESFGF 11 Unmodified _AYLPVNESFGF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3048706054688 2 622.303321 1242.59209 0.87681 0.00054564 0.1318 8.2017E-05 1.0086 0.00062766 622.3034419017616 94.649 0.71825 88.474 88.118 88.837 -6.1757 135 41 4 0 0 0 0.0052184 4 62860 62497;62618;62737;62860 74.929 53.392 1 87512000 4002 7651 2690 2741 4631;4632;4633;4634 4634 -0.01950309076460144 AYLQHWQQLF 10 Unmodified _AYLQHWQQLF_ 0 0 0 ENSG00000061455|ENST00000407847|PRDM6 ENSG00000061455|ENST00000407847|PRDM6 ENSG00000061455|ENST00000407847|PRDM6 MSMS AL20221201_MKP_PDAC_01 4 667.328857421875 2 667.33803 1332.66151 NaN NaN NaN NaN NaN NaN NaN 102.36 1 96.183 95.683 96.683 -6.1757 0 0 0 0.96981 1 68690 68690 3.9444 0 1 4003 837 2691 2742 4635 4635 0.008481946629672166 AYLQKNNDF 9 Unmodified _AYLQKNNDF_ 0 0 0 ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4 ENST00000418251.6_1_2:113943320-113958989:+|nuORF ENST00000418251.6_1_2:113943320-113958989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.77392578125 2 556.772188 1111.52982 0.20734 0.00011544 1.6456 0.0009162 1.8529 0.0010316 556.7735450803526 31.046 0.15826 31.046 30.974 31.132 0 15 7 3 0 0 0 0.49272 1 16185 16185 7.9102 0.62092 1 989000 4004 3865 2692 2743 4636 4636 -0.021480354247842115 AYLQRIALY 9 Unmodified _AYLQRIALY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENST00000467892.1_1_2:80816479-80835548:+|nuORF;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8201293945312 2 555.818941 1109.62333 0.62304 0.0003463 1.2359 0.00068694 1.8589 0.0010332 555.8195045222632 59.057 0.22498 58.996 58.88 59.105 -0.060719 25 10 3 0 0 0 0.022193 1 32173 32173 61.357 30.721 1 3567900 4005 671;924 2693 2744 4637 4637 0.0729030874831551 AYLQWRRF 8 Unmodified _AYLQWRRF_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7937622070312 2 570.309075 1138.6036 0.64077 0.00036544 -0.48079 -0.0002742 0.15998 9.1237E-05 570.3091065930404 58.564 0.19448 58.503 58.373 58.568 -0.060719 12 9 2 0 0 0 8.7369 1 31831 31831 13.508 3.434 1 2038200 4006 6744 2694 2745 4638 4638 0.039839775282189294 AYLRIHAHF 9 Unmodified _AYLRIHAHF_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2;ENST00000301781.10_1_11:62457841-62462085:-|nuORF nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5416870117188 3 376.541809 1126.6036 -0.1748 -6.582E-05 -0.24287 -9.1451E-05 -0.41767 -0.00015727 376.5417489219678 35.998 0.53225 36.023 35.864 36.396 0.024967 52 23 3 0 0 0 0.042911 2 19017 19017;19118 51.63 44.153 1 16346000 4007 7698 2695 2746 4639;4640 4639 0.0453597752823498 AYLRIHAHF 9 Unmodified _AYLRIHAHF_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2;ENST00000301781.10_1_11:62457841-62462085:-|nuORF nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5422668457031 3 376.541809 1126.6036 1.3093 0.00049301 -0.83512 -0.00031446 0.4742 0.00017856 376.5415070958961 75.52 0.73826 69.344 69.063 69.801 -6.1757 77 39 3 0 0 0 0.023164 3 49334 49334;49461;49584 45.7 37.544 1 14185000 4008 7698 2695 2746 4641;4642;4643 4641 0.0453597752823498 AYLRIHAHF 9 Unmodified _AYLRIHAHF_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2;ENST00000301781.10_1_11:62457841-62462085:-|nuORF nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 376.541809 1126.6036 0.92468 0.00034818 0.32054 0.0001207 1.2452 0.00046887 376.5425764928677 40.339 0.2617 35.81 35.672 35.934 -4.5294 -0.1065 0.00061263 NaN 51.63 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 7414200 4009 7698 2695 2746 0.0453597752823498 AYLRRSHQGV 10 Unmodified _AYLRRSHQGV_ 0 0 0 ENST00000336854.8_1_12:52464018-52464234:+|nuORF;ENST00000548915.1_1_12:52463821-52464234:+|nuORF;ENST00000553049.5_1_12:52463793-52464234:+|nuORF;ENST00000552544.5_1_12:52464018-52464234:+|nuORF ENST00000336854.8_1_12:52464018-52464234:+|nuORF ENST00000336854.8_1_12:52464018-52464234:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8257446289062 2 593.825621 1185.63669 NaN NaN NaN NaN NaN NaN NaN 43.395 1 43.38 42.88 43.88 -0.015667 0 0 0 0.28434 1 23257 23257 37.974 0 1 4010 11917 2696 2747 4644 4644 0.05129559580245768 AYLSEAMKL 9 Oxidation (M) _AYLSEAM(Oxidation (M))KL_ AYLSEAM(1)KL AYLSEAM(50)KL 0 0 1 nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2685546875 2 521.267893 1040.52123 0.36756 0.0001916 0.14807 7.7184E-05 0.51563 0.00026878 521.2681377497149 39.916 0.36877 39.916 39.72 40.089 0 55 18 4 0 0 0 0.039985 1 21429 21429 49.933 17.628 1 15576000 4011 5944 2697 2748 4645 4645 1063 0.0025927461438186583 AYLSEAMKL 9 Oxidation (M) _AYLSEAM(Oxidation (M))KL_ AYLSEAM(1)KL AYLSEAM(46)KL 0 0 1 nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2684936523438 2 521.267893 1040.52123 0.4979 0.00025954 -0.36262 -0.00018902 0.13528 7.0518E-05 521.2679670909981 45.396 0.25781 40.442 40.284 40.541 -4.9549 22 17 2 0 0 0 0.047788 1 27842 27842 45.7 13.394 1 14999000 4012 5944 2697 2748 4646 4646 1063 0.0025927461438186583 AYLSEAMKL 9 Unmodified _AYLSEAMKL_ 0 0 0 nc|ENSG00000148572|Q96F24-2|NRBF2;nc|ENSG00000148572|Q96F24-3|NRBF2;ENSG00000148572|ENST00000277746|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 nc|ENSG00000148572|Q96F24-2|NRBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2693481445312 2 513.270435 1024.52632 NaN NaN NaN NaN NaN NaN NaN 55.796 1 55.318 54.818 55.818 -0.47798 0 0 0 0.10759 1 30276 30276 41.84 9.0539 1 4013 5944 2697 2749 4647 4647 0.015035784770134342 AYLSGMLRF 9 Oxidation (M) _AYLSGM(Oxidation (M))LRF_ AYLSGM(1)LRF AYLSGM(52)LRF 0 0 1 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2757568359375 2 537.276052 1072.53755 0.52806 0.00028371 0.077874 4.184E-05 0.60593 0.00032555 537.2761031049095 58.753 0.67962 58.692 58.486 59.166 -0.060719 104 33 5 0 0 0 0.03568 1 31936 31936 52.268 25.385 1 83893000 4014 7679 2698 2750 4648 4648 1312 0.004184005711522332 AYLSGMLRF 9 Unmodified _AYLSGMLRF_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2785034179688 2 529.278595 1056.54264 0.20035 0.00010604 0.57711 0.00030545 0.77745 0.00041149 529.2790853778802 73.314 0.54345 73.357 73.127 73.671 0.04261 58 24 4 0 0 0 0.0090948 2 40358 40358;40457 85.272 49.228 1 11651000 4015 7679 2698 2751 4649;4650 4649 0.016627044337838015 AYLSGMLRF 9 Unmodified _AYLSGMLRF_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.279052734375 2 529.278595 1056.54264 1.1501 0.00060872 -0.56421 -0.00029862 0.58589 0.0003101 529.2784541590719 91.764 0.71471 85.588 85.29 86.005 -6.1757 116 40 4 0 0 0 0.0082485 4 60634 60515;60634;60751;60885 96.285 51.878 1 220360000 4016 7679 2698 2751 4651;4652;4653;4654 4652 0.016627044337838015 AYLSIWTEL 9 Unmodified _AYLSIWTEL_ 0 0 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1 ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.290283203125 2 548.289682 1094.56481 0.9597 0.00052619 0.25823 0.00014158 1.2179 0.00066778 548.289560476788 100.73 0.11073 94.555 94.488 94.599 -6.1757 16 7 3 0 0 0 0.087258 1 67448 67448 36.044 3.9272 1 35125000 4017 4310 2699 2752 4655 4655 0.021312073831722955 AYLSKAMEI 9 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ AYLSKAM(1)EI AYLSKAM(72)EI 0 0 1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2678833007812 2 521.267893 1040.52123 -0.22509 -0.00011733 -0.10192 -5.3127E-05 -0.32701 -0.00017046 521.2678777240565 34.909 0.37837 34.909 34.675 35.053 0 46 19 3 0 0 0 0.013041 1 18474 18474 71.922 39.617 1 36220000 4018 3817 2700 2753 4656 4656 673 0.0025927461438186583 AYLSKAMEI 9 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ AYLSKAM(1)EI AYLSKAM(60)EI 0 0 1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2673950195312 2 521.267893 1040.52123 -0.062531 -3.2596E-05 -0.8933 -0.00046565 -0.95583 -0.00049824 521.2676490454498 35.26 0.32698 35.26 35.053 35.38 0 47 16 4 0 0 0 0.023481 1 18603 18603 60.074 22.1 1 41135000 4019 3817 2700 2753 4657 4657 673 0.0025927461438186583 AYLSKAMEI 9 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ AYLSKAM(1)EI AYLSKAM(48)EI 0 0 1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.267822265625 2 521.267893 1040.52123 -0.41718 -0.00021746 0.62536 0.00032598 0.20818 0.00010852 521.2681114810836 35.041 0.3373 34.819 34.6 34.938 -0.2224 35 14 3 0 0 0 0.044011 1 18331 18331 47.749 22.349 1 3026000 4020 3817 2700 2753 4658 4658 673 0.0025927461438186583 AYLSKAMEI 9 Oxidation (M) _AYLSKAM(Oxidation (M))EI_ AYLSKAM(1)EI AYLSKAM(77)EI 0 0 1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2677001953125 2 521.267893 1040.52123 0.6033 0.00031448 0.19839 0.00010342 0.80169 0.00041789 521.2678994246155 39.714 0.36134 35.263 35.058 35.42 -4.4509 57 22 3 0 0 0 0.011291 1 23542 23542 76.825 34.985 1 32113000 4021 3817 2700 2753 4659 4659 673 0.0025927461438186583 AYLSKAMEI 9 Unmodified _AYLSKAMEI_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2711791992188 2 513.270435 1024.52632 0.69909 0.00035882 -0.050133 -2.5732E-05 0.64896 0.00033309 513.2705106763299 49.699 0.29267 49.307 49.138 49.431 -0.3923 35 14 4 0 0 0 0.032796 1 26745 26745 53.833 17.706 1 4133600 4022 3817 2700 2754 4660 4660 0.015035784770134342 AYLSKAMEI 9 Unmodified _AYLSKAMEI_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2705078125 2 513.270435 1024.52632 1.0346 0.00053104 -0.45276 -0.00023239 0.58185 0.00029865 513.2703402633014 55.405 0.49457 49.484 49.272 49.766 -5.9211 77 30 3 0 0 0 0.025842 2 35374 35245;35374 57.722 19.748 1 111450000 4023 3817 2700 2754 4661;4662 4662 0.015035784770134342 AYLSKAMEI 9 Unmodified _AYLSKAMEI_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.270435 1024.52632 0.56128 0.00028809 -0.13285 -6.8186E-05 0.42844 0.0002199 513.2703634003378 49.35 0.31271 49.35 49.152 49.465 0 -0.029996 0.00010779 NaN 57.722 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3330300 4024 3817 2700 2754 0.015035784770134342 AYLTEHEKI 9 Unmodified _AYLTEHEKI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5284423828125 3 368.529235 1102.56587 -0.72833 -0.00026841 -0.15775 -5.8134E-05 -0.88608 -0.00032655 368.5291339313269 28.422 0.20877 28.422 28.311 28.52 0 21 12 2 0 0 0 0.11784 1 14672 14672 29.437 7.847 1 5401400 4025 10770 2701 2755 4663 4663 0.018694217520987877 AYLTEHEKI 9 Unmodified _AYLTEHEKI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5301208496094 3 368.529235 1102.56587 1.3304 0.0004903 0.29514 0.00010877 1.6256 0.00059907 368.5292873589248 31.893 0.27328 28.197 28.066 28.339 -3.6958 21 14 2 0 0 0 0.078314 1 18095 18095 29.437 12.871 1 16229000 4026 10770 2701 2755 4664 4664 0.018694217520987877 AYLTIHSY 8 Unmodified _AYLTIHSY_ 0 0 0 ENSG00000153002|ENST00000282957|CPB1;CPB1|p.M309I|1|0.19|ENSG00000153002|chr3:148845572-148845572|G/A|missense_variant ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 MSMS AL20221201_MKP_PDAC_01 4 484.2464294433594 2 484.247818 966.481082 NaN NaN NaN NaN NaN NaN NaN 48.862 1 43.466 42.966 43.966 -5.3961 0 0 0 0.70013 1 30467 30467 28.173 1.2896 1 4027 6227 2702 2756 4665 4665 -0.0034990399386742865 AYLTLTSRM 9 Oxidation (M) _AYLTLTSRM(Oxidation (M))_ AYLTLTSRM(1) AYLTLTSRM(72) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2798461914062 2 536.278792 1070.54303 -0.11595 -6.2182E-05 1.0507 0.00056346 0.93474 0.00050128 536.2796373821845 39.614 0.43784 39.317 39.154 39.592 -0.29716 44 20 3 0 0 0 0.013041 1 20868 20868 71.922 21.989 1 15047000 4028 1295 2703 2757 4666 4666 219 0.010580793629742402 AYLTLTSRM 9 Oxidation (M) _AYLTLTSRM(Oxidation (M))_ AYLTLTSRM(1) AYLTLTSRM(72) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2791137695312 2 536.278792 1070.54303 0.27042 0.00014502 1.0402 0.00055786 1.3107 0.00070288 536.2795735892275 39.312 0.40479 39.323 39.084 39.489 0.011452 50 18 4 0 0 0 0.013041 1 20954 20954 71.922 7.9618 1 10276000 4029 1295 2703 2757 4667 4667 219 0.010580793629742402 AYLTLTSRM 9 Unmodified _AYLTLTSRM_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7826538085938 2 528.281334 1054.54812 0.93429 0.00049357 0.87629 0.00046293 1.8106 0.0009565 528.2818366914087 57.195 0.38555 51.168 50.971 51.356 -6.0275 38 21 2 0 0 0 0.017075 2 36496 36496;36632 66.457 32.055 1 57918000 4030 1295 2703 2758 4668;4669 4668 0.023023832256058085 AYLTSKTL 8 Unmodified _AYLTSKTL_ 0 0 0 ENST00000309874.2_1_15:42187229-42187805:+|nuORF ENST00000309874.2_1_15:42187229-42187805:+|nuORF ENST00000309874.2_1_15:42187229-42187805:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.75927734375 2 448.758018 895.501483 NaN NaN NaN NaN NaN NaN NaN 69.976 1 69.497 68.997 69.997 -0.47903 0 0 0 0.97444 1 38260 38260 2.8892 0 1 4031 11666 2704 2759 4670 4670 0.04955266665945146 AYLVAHSFL 9 Unmodified _AYLVAHSFL_ 0 0 0 nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7778930664062 2 510.779285 1019.54402 0.21292 0.00010875 -3.2184 -0.0016439 -3.0055 -0.0015352 510.77831055139893 63.742 0.14724 63.256 63.171 63.318 -0.48617 10 6 2 0 0 0 0.14602 1 34793 34793 28.487 11.545 1 843900 4032 5458 2705 2760 4671 4671 0.03502661794186679 AYLVAHSFL 9 Unmodified _AYLVAHSFL_ 0 0 0 nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 510.779285 1019.54402 0.7648 0.00039064 -1.0329 -0.00052757 -0.26808 -0.00013693 510.7787037176243 63.361 0.20016 63.339 63.201 63.402 -0.021614 0.041577 0.00018736 NaN 28.487 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2707900 4033 5458 2705 2760 0.03502661794186679 AYLVDVMGP 9 Unmodified _AYLVDVMGP_ 0 0 0 REV__ENSG00000138303|ENST00000672957|ASCC1 REV__ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.744140625 2 482.744053 963.473554 0.98441 0.00047522 0.29546 0.00014263 1.2799 0.00061785 482.7439103799778 83.208 0.70856 77.033 76.677 77.385 -6.1757 102 37 4 0 0 0 0.18465 1 54692 54692 24.674 1.5255 1 28152000 + 4034 20319 2706 2761 4672 4672 -0.009643795857869009 AYLVNTYAL 9 Unmodified _AYLVNTYAL_ 0 0 0 ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2752685546875 2 514.276575 1026.5386 0.30712 0.00015795 -0.0023887 -1.2285E-06 0.30473 0.00015672 514.2763120298047 69.329 0.31526 69.329 69.152 69.467 0 25 13 2 0 0 0 0.068777 1 38596 38596 40.449 11.962 1 2495700 4035 2682 2707 2762 4673 4673 0.026389382117031346 AYLVNTYAL 9 Unmodified _AYLVNTYAL_ 0 0 0 ENSG00000109919|ENST00000302503|MTCH2;ENST00000534074.5_1_11:47640387-47650630:-|nuORF ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.27685546875 2 514.276575 1026.5386 -0.15379 -7.909E-05 0.78133 0.00040182 0.62754 0.00032273 514.2769275357655 69.805 0.44989 69.326 69.086 69.536 -0.47903 37 19 2 0 0 0 0.068777 2 38178 38081;38178 40.449 6.3461 1 17241000 4036 2682 2707 2762 4674;4675 4675 0.026389382117031346 AYLVYTDRL 9 Unmodified _AYLVYTDRL_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3020629882812 2 557.300581 1112.58661 1.1514 0.00064169 -0.1099 -6.1247E-05 1.0415 0.00058045 557.3006590802116 54.619 0.27578 54.619 54.44 54.715 0 26 11 3 0 0 0 0.047788 1 30312 30312 45.7 24.828 1 2684100 4037 5381 2708 2763 4676 4676 0.03482012131757983 AYLVYTDRL 9 Unmodified _AYLVYTDRL_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3019409179688 2 557.300581 1112.58661 0.49776 0.0002774 0.62688 0.00034936 1.1246 0.00062676 557.3011043503833 55.148 0.35473 54.67 54.528 54.883 -0.47798 48 16 4 0 0 0 0.009483 2 29883 29883;29990 81.89 49.105 1 11595000 4038 5381 2708 2763 4677;4678 4677 0.03482012131757983 AYLVYTDRL 9 Unmodified _AYLVYTDRL_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3011474609375 2 557.300581 1112.58661 1.2229 0.00068153 0.35107 0.00019565 1.574 0.00087718 557.300808971329 61.047 0.33039 54.899 54.706 55.036 -6.1478 31 17 2 0 0 0 0.0082353 1 39242 39242 96.111 57.935 1 48658000 4039 5381 2708 2763 4679 4679 0.03482012131757983 AYLYEVSQL 9 Unmodified _AYLYEVSQL_ 0 0 0 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.A464T|1|0.17|ENSG00000133313|chr18:74520030-74520030|G/A|missense_variant nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2799682617188 2 543.279315 1084.54408 0.35337 0.00019198 0.51439 0.00027946 0.86777 0.00047144 543.2794788873189 68.262 0.6346 68.262 67.875 68.509 0 48 19 4 0 0 0 0.038285 1 38109 38109 50.855 24.514 1 6495100 4040 4504 2709 2764 4680 4680 0.005186170035358373 AYLYEVSQL 9 Unmodified _AYLYEVSQL_ 0 0 0 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.A464T|1|0.17|ENSG00000133313|chr18:74520030-74520030|G/A|missense_variant nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2778930664062 2 543.279315 1084.54408 0.046133 2.5063E-05 -1.3226 -0.00071856 -1.2765 -0.0006935 543.2785707247918 68.827 0.53349 68.346 68.118 68.652 -0.48071 54 21 4 0 0 0 0.18465 1 37689 37689 24.674 7.7316 1 5383500 4041 4504 2709 2764 4681 4681 0.005186170035358373 AYLYEVSQL 9 Unmodified _AYLYEVSQL_ 0 0 0 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.A464T|1|0.17|ENSG00000133313|chr18:74520030-74520030|G/A|missense_variant nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2797241210938 2 543.279315 1084.54408 0.67425 0.00036631 -0.44332 -0.00024084 0.23094 0.00012546 543.2791938026218 75.931 0.48306 69.755 69.521 70.004 -6.1757 58 25 3 0 0 0 0.038285 2 49568 49568;49699 50.855 18.55 1 21233000 4042 4504 2709 2764 4682;4683 4682 0.005186170035358373 AYMAAFNSI 9 Oxidation (M) _AYM(Oxidation (M))AAFNSI_ AYM(1)AAFNSI AYM(43)AAFNSI 0 0 1 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-3|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2320556640625 2 502.23131 1002.44807 0.66339 0.00033318 -1.5285 -0.00076764 -0.86507 -0.00043446 502.2308594491355 53.074 0.34153 53.074 52.88 53.221 0 34 15 3 0 0 0 0.058206 1 29403 29403 42.968 29.46 1 2363700 4043 9165 2710 2765 4684 4684 1528 -0.053058541082123156 AYMAAFNSI 9 Unmodified _AYMAAFNSI_ 0 0 0 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-3|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MSMS AL20221201_MKP_PDAC_01 4 494.2324829101562 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 73.37 1 67.194 66.694 67.694 -6.1757 0 0 0 0.27711 1 47983 47983 26.341 8.2063 1 4044 9165 2710 2766 4685 4685 -0.04061550245603485 AYMCPFMQF 9 Carbamidomethyl (C),2 Oxidation (M) _AYM(Oxidation (M))C(Carbamidomethyl (C))PFM(Oxidation (M))QF_ AYMC(1)PFMQF AYM(1)CPFM(1)QF AYMC(60)PFMQF AYM(60)CPFM(60)QF 0 1 2 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7372436523438 2 613.737588 1225.46062 0.038398 2.3566E-05 0.12162 7.4643E-05 0.16002 9.8209E-05 613.7379605502014 61.507 0.52672 61.018 60.756 61.283 -0.48932 54 24 3 0 0 0 0.023761 1 33413 33413 59.795 51.885 1 3536700 4045 8643;6080 2711 2767 4686 4686 605 1078;1079 -0.1430890203182571 AYMCPFMQF 9 Carbamidomethyl (C),2 Oxidation (M) _AYM(Oxidation (M))C(Carbamidomethyl (C))PFM(Oxidation (M))QF_ AYMC(1)PFMQF AYM(1)CPFM(1)QF AYMC(50)PFMQF AYM(50)CPFM(50)QF 0 1 2 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.7384643554688 2 613.737588 1225.46062 0.56305 0.00034556 -0.44215 -0.00027137 0.1209 7.4199E-05 613.7375421601809 61.134 0.29916 61.091 60.845 61.145 -0.04351 37 14 3 0 0 0 0.040472 1 33306 33306 49.669 43.937 1 5140700 4046 8643;6080 2711 2767 4687 4687 605 1078;1079 -0.1430890203182571 AYMCPFMQF 9 Carbamidomethyl (C),2 Oxidation (M) _AYM(Oxidation (M))C(Carbamidomethyl (C))PFM(Oxidation (M))QF_ AYMC(1)PFMQF AYM(1)CPFM(1)QF AYMC(86)PFMQF AYM(86)CPFM(86)QF 0 1 2 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.7371215820312 2 613.737588 1225.46062 0.50371 0.00030915 1.6351 0.0010035 2.1388 0.0013127 614.2406956177925 67.899 0.44186 61.724 61.499 61.94 -6.1757 43 25 2 0 0 0 0.0089973 1 44295 44295 86.121 67.975 1 23201000 4047 8643;6080 2711 2767 4688 4688 605 1078;1079 -0.1430890203182571 AYMCPFMQF 9 Carbamidomethyl (C),Oxidation (M) _AYMC(Carbamidomethyl (C))PFM(Oxidation (M))QF_ AYMC(1)PFMQF AYMCPFM(1)QF AYMC(86)PFMQF AYM(-73)CPFM(73)QF 0 1 1 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2424926757812 2 605.740131 1209.46571 0.46225 0.00028 -0.71287 -0.00043181 -0.25062 -0.00015181 605.7398235424906 80.105 0.60639 73.929 73.762 74.369 -6.1757 60 35 2 0 0 0 0.0089973 3 52789 52527;52665;52789 86.121 70.274 2 16542000 4048 8643;6080 2711 2768 4689;4690;4691 4691 605 1078;1079 -0.1306459816921688 AYMCPFMQF 9 Carbamidomethyl (C),Oxidation (M) _AYM(Oxidation (M))C(Carbamidomethyl (C))PFMQF_ AYMC(1)PFMQF AYM(1)CPFMQF AYMC(50)PFMQF AYM(41)CPFM(-41)QF 0 1 1 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.7410278320312 2 605.740131 1209.46571 0.60336 0.00036548 -0.079735 -4.8299E-05 0.52363 0.00031718 605.7403861820077 83.702 0.51006 77.527 77.287 77.798 -6.1757 63 26 3 0 0 0 0.040472 2 55127 54994;55127 49.669 38.845 2 21754000 4049 8643;6080 2711 2768 4692;4693 4693 605 1078;1079 -0.1306459816921688 AYMCPFMQF 9 Carbamidomethyl (C) _AYMC(Carbamidomethyl (C))PFMQF_ AYMC(1)PFMQF AYMC(78)PFMQF 0 1 0 ENSG00000176986|ENST00000345254|SEC24C;ENST00000509818.5_1_4:119687763-119745832:-|nuORF;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;SEC24D|p.P395Hfs*25|1|0.08|ENSG00000150961|chr4:118764914-118764914|G/-|frameshift_variant;ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000176986|ENST00000345254|SEC24C;ENSG00000150961|ENST00000280551|SEC24D ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8327026367188 2 597.742673 1193.47079 0.90034 0.00053817 0.46869 0.00028016 1.369 0.00081833 597.7429919691032 97.379 0.54394 91.204 90.877 91.421 -6.1757 68 30 3 0 0 0 0.010712 3 64495 64495;64527;64646 78.445 63.863 1 14256000 4050 8643;6080 2711 2769 4694;4695;4696 4694 605 -0.11820294306608048 AYMCWSLL 8 Unmodified _AYMCWSLL_ 0 0 0 ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7276000976562 2 493.727349 985.440145 0.18988 9.3748E-05 -0.67282 -0.00033219 -0.48294 -0.00023844 493.7271898549343 58.533 0.28725 58.533 58.366 58.654 0 19 11 2 0 0 0 0.76859 1 32610 32610 11.114 0.93107 1 1188700 4051 4981 2712 2770 4697 4697 -0.05315704629333595 AYMDAPKAAL 10 Oxidation (M) _AYM(Oxidation (M))DAPKAAL_ AYM(1)DAPKAAL AYM(50)DAPKAAL 0 0 1 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7651977539062 2 533.765517 1065.51648 0.24644 0.00013154 -1.1587 -0.00061845 -0.91221 -0.0004869 533.7650630964222 31.521 0.54388 31.521 31.276 31.82 0 75 26 5 0 0 0 0.087043 1 16385 16385 49.554 26.818 1 15556000 4052 7125 2713 2771 4698 4698 1226 -0.013656095283749892 AYMDAPKAAL 10 Unmodified _AYMDAPKAAL_ 0 0 0 ENST00000494854.5_1_3:48510508-48510649:-|nuORF;ENST00000497863.1_1_3:48510508-48511042:-|nuORF;nc|ENSG00000164054|Q8N114-3|SHISA5;ENST00000465449.5_1_3:48510508-48514931:-|nuORF;nc|ENSG00000164054|Q8N114-2|SHISA5;nc|ENSG00000164054|Q8N114-5|SHISA5;ENSG00000164054|ENST00000296444|SHISA5 ENST00000494854.5_1_3:48510508-48510649:-|nuORF ENST00000494854.5_1_3:48510508-48510649:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7684936523438 2 525.76806 1049.52157 0.74526 0.00039183 -0.42755 -0.00022479 0.31771 0.00016704 525.7679041422018 48.002 0.39322 42.768 42.565 42.958 -5.2339 57 23 3 0 0 0 0.16005 2 29930 29792;29930 38.615 13.285 1 67574000 4053 7125 2713 2772 4699;4700 4700 -0.001213056657661582 AYMDENRNITF 11 Oxidation (M) _AYM(Oxidation (M))DENRNITF_ AYM(1)DENRNITF AYM(43)DENRNITF 0 0 1 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 695.3076782226562 2 695.308809 1388.60306 -0.27512 -0.0001913 -0.53642 -0.00037298 -0.81154 -0.00056427 695.3087894749718 40.42 0.21472 40.42 40.314 40.529 0 20 10 3 0 0 0 0.096911 1 21722 21722 42.835 32.036 1 3659200 4054 693 2714 2773 4701 4701 107 -0.07569274764477996 AYMEDAPLL 9 Oxidation (M) _AYM(Oxidation (M))EDAPLL_ AYM(1)EDAPLL AYM(64)EDAPLL 0 0 1 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.744140625 2 519.74425 1037.47395 0.72541 0.00037703 -1.1648 -0.00060542 -0.43943 -0.00022839 519.7439718043177 57.271 0.42113 57.271 56.998 57.419 0 48 18 3 0 0 0 0.019979 1 31839 31839 63.563 37.222 1 4468000 4055 16096;16097 2715 2774 4702 4702 1791 -0.04329004656597135 AYMEEEGVFHF 11 Oxidation (M) _AYM(Oxidation (M))EEEGVFHF_ AYM(1)EEEGVFHF AYM(52)EEEGVFHF 0 0 1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.7874755859375 2 687.787178 1373.5598 -0.0040556 -2.7894E-06 -0.18571 -0.00012773 -0.18977 -0.00013052 687.7869453897347 61.555 0.2958 61.555 61.389 61.685 0 23 13 2 0 0 0 0.043669 1 34291 34291 52.268 40.774 1 1507400 4056 5409 2716 2775 4703 4703 994 -0.11203464541745234 AYMKYGCF 8 Unmodified _AYMKYGCF_ 0 0 0 ENSG00000069764|ENST00000438167|PLA2G10 ENSG00000069764|ENST00000438167|PLA2G10 ENSG00000069764|ENST00000438167|PLA2G10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7126159667969 2 491.711699 981.408845 0.99886 0.00049115 1.4351 0.00070565 2.434 0.0011968 491.71234068124414 80.946 0.29025 80.453 80.292 80.582 -0.49247 18 12 2 0 0 0 0.80624 1 44301 44301 2.8892 0 1 1274800 4057 1006 2717 2776 4704 4704 -0.08260277663441684 AYMLMHETI 9 2 Oxidation (M) _AYM(Oxidation (M))LM(Oxidation (M))HETI_ AYM(1)LM(1)HETI AYM(78)LM(78)HETI 0 0 2 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7557983398438 2 570.756835 1139.49912 0.32955 0.00018809 -1.9106 -0.0010905 -1.581 -0.00090238 570.755852907576 37.406 0.68813 37.406 36.936 37.625 0 53 35 2 0 0 0 0.010877 2 19977 19853;19977 77.984 51.101 1 9759600 4058 5077 2718 2777 4705;4706 4706 929;930 -0.06505273125662825 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(89)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2728271484375 2 571.770603 1141.52665 0.28661 0.00016388 -0.018025 -1.0306E-05 0.26859 0.00015357 571.7699322803718 66.209 0.60904 65.726 65.541 66.15 -0.48323 73 31 3 0 0 0 0.0086179 1 36174 36174 89.427 47.332 1 10461000 4059 5828 2719 2778 4707 4707 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(89)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7710571289062 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 66.44 1 65.957 65.457 66.457 -0.48323 0 0 0 0.011967 1 36283 36283 89.427 47.332 1 4060 5828 2719 2778 4708 4708 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(89)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7699584960938 2 571.770603 1141.52665 0.80435 0.0004599 -0.64511 -0.00036885 0.15924 9.1051E-05 571.7703717980404 65.77 0.30164 65.78 65.571 65.873 0.0095596 48 14 4 0 0 0 0.0086179 2 36005 36005;36108 89.427 55.324 1 63855000 4061 5828 2719 2778 4709;4710 4709 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(78)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.771240234375 2 571.770603 1141.52665 0.89481 0.00051162 -0.32446 -0.00018552 0.57035 0.00032611 571.7706637834164 66.019 0.45475 66.028 65.747 66.202 0.0095596 72 22 5 0 0 0 0.010877 1 36209 36209 77.984 43.882 1 68938000 4062 5828 2719 2778 4711 4711 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(89)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2725219726562 2 571.770603 1141.52665 0.96962 0.0005544 -0.96918 -0.00055415 0.0004423 2.5289E-07 571.7703916060581 70.185 0.62704 64.009 63.706 64.333 -6.1757 99 35 4 0 0 0 0.0086179 3 45713 45713;45838;45962 89.427 51.276 1 62560000 4063 5828 2719 2778 4712;4713;4714 4712 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(67)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MSMS AL20221201_MKP_PDAC_01 4 571.7713012695312 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 72.341 1 66.165 65.665 66.665 -6.1757 0 0 0 0.029091 1 47334 47334 67.344 33.241 1 4064 5828 2719 2778 4715 4715 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(89)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MSMS AL20221201_MKP_PDAC_01 4 571.7699584960938 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 72.714 1 66.538 66.038 67.038 -6.1757 0 0 0 0.011967 1 47569 47569 89.427 57.121 1 4065 5828 2719 2778 4716 4716 1050 -0.038450018031426225 AYMPHTFFI 9 Oxidation (M) _AYM(Oxidation (M))PHTFFI_ AYM(1)PHTFFI AYM(71)PHTFFI 0 0 1 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MSMS AL20221201_MKP_PDAC_01 4 571.7684936523438 2 571.770603 1141.52665 NaN NaN NaN NaN NaN NaN NaN 72.911 1 66.735 66.235 67.235 -6.1757 0 0 0 0.026323 1 47692 47692 70.716 52.569 1 4066 5828 2719 2778 4717 4717 1050 -0.038450018031426225 AYMPHTFFI 9 Unmodified _AYMPHTFFI_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7737426757812 2 563.773145 1125.53174 0.57958 0.00032675 0.19571 0.00011033 0.77529 0.00043709 563.7734192898549 75.714 0.41386 75.762 75.474 75.888 0.047943 51 18 4 0 0 0 0.023164 2 41669 41669;41772 60.39 38.643 1 26883000 4067 5828 2719 2779 4718;4719 4718 -0.026006979405110542 AYMPHTFFI 9 Unmodified _AYMPHTFFI_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7739868164062 2 563.773145 1125.53174 1.3545 0.00076361 -0.18065 -0.00010185 1.1738 0.00066176 563.7730651948931 94.08 0.67844 87.904 87.603 88.282 -6.1757 142 39 5 0 0 0 0.013472 3 62377 62247;62377;62495 70.716 51.459 1 265280000 4068 5828 2719 2779 4720;4721;4722 4721 -0.026006979405110542 AYMQEPLFVEF 11 Oxidation (M) _AYM(Oxidation (M))QEPLFVEF_ AYM(1)QEPLFVEF AYM(90)QEPLFVEF 0 0 1 ENSG00000273611|ENST00000617429|ZNHIT3 ENSG00000273611|ENST00000617429|ZNHIT3 ENSG00000273611|ENST00000617429|ZNHIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 695.3245239257812 2 695.323396 1388.63224 -0.50329 -0.00034995 0.73164 0.00050873 0.22836 0.00015878 695.3243079177151 98.933 0.18903 92.757 92.689 92.878 -6.1757 28 12 3 0 0 0 0.00036894 1 65725 65725 90.135 66.114 1 81257000 4069 10895 2720 2780 4723 4723 1735 -0.046531304681820984 AYMQEPLFVEF 11 Unmodified _AYMQEPLFVEF_ 0 0 0 ENSG00000273611|ENST00000617429|ZNHIT3 ENSG00000273611|ENST00000617429|ZNHIT3 ENSG00000273611|ENST00000617429|ZNHIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.3284912109375 2 687.325939 1372.63732 0.92044 0.00063264 -0.14502 -9.9679E-05 0.77542 0.00053296 687.326348656213 100.52 0.15013 94.345 94.254 94.404 -6.1757 26 8 4 0 0 0 0.00092607 1 67202 67202 110.79 74.287 1 94111000 4070 10895 2720 2781 4724 4724 -0.0340882660555053 AYMQMLRKL 9 Unmodified _AYMQMLRKL_ 0 0 0 nc|ENSG00000106565|Q3YBM2-2|TMEM176B;ENSG00000106565|ENST00000326442|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.9017944335938 3 385.212195 1152.61476 0.11121 4.2841E-05 1.4806 0.00057033 1.5918 0.00061317 385.21278475447036 28.312 0.6942 28.341 28.012 28.706 0.029564 46 27 2 0 0 0 0.21404 1 14831 14831 2.7352 2.7352 1 2343900 4071 2439 2721 2782 4725 4725 0.04455295515845137 AYMSIMTQM 9 3 Oxidation (M) _AYM(Oxidation (M))SIM(Oxidation (M))TQM(Oxidation (M))_ AYM(1)SIM(1)TQM(1) AYM(44)SIM(44)TQM(44) 0 0 3 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2261962890625 2 562.227053 1122.43955 -0.18051 -0.00010149 -2.0648 -0.0011609 -2.2454 -0.0012624 562.226261678659 25.308 0.25765 25.308 25.128 25.386 0 43 12 4 0 0 0 0.052168 1 12902 12902 44.407 36.497 1 9422000 4072 3760 2722 2783 4726 4726 658;659;660 -0.11676912131338213 AYMSVHRLL 9 Oxidation (M) _AYM(Oxidation (M))SVHRLL_ AYM(1)SVHRLL AYM(42)SVHRLL 0 0 1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.1988525390625 3 369.198943 1104.575 0.12249 4.5225E-05 -1.4731 -0.00054387 -1.3506 -0.00049865 369.1984142353108 31.656 0.29296 31.526 31.354 31.647 -0.12915 35 11 4 0 0 0 0.062454 1 16426 16426 41.956 13.461 1 12315000 4073 10089 2723 2784 4727 4727 1639 0.02689491836781599 AYMSVHRLL 9 Oxidation (M) _AYM(Oxidation (M))SVHRLL_ 0 0 1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.198943 1104.575 -0.30289 -0.00011183 -0.80721 -0.00029802 -1.1101 -0.00040985 369.19890275893255 31.738 0.20014 31.738 31.64 31.84 0 0.15096 0.00053371 NaN 41.956 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 503360 4074 10089 2723 2784 1639 0.02689491836781599 AYMSVHRLL 9 Unmodified _AYMSVHRLL_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8681640625 3 363.867305 1088.58008 2.1729 0.00079064 -0.80177 -0.00029174 1.3711 0.0004989 363.8671102171817 47.549 0.49282 42.315 42.072 42.565 -5.2339 39 28 2 0 0 0 0.29507 1 29500 29500 17.443 3.8278 1 10165000 4075 10089 2723 2785 4728 4728 0.03933795699413167 AYMTKCGHSF 10 Carbamidomethyl (C) _AYMTKC(Carbamidomethyl (C))GHSF_ AYMTKC(1)GHSF AYMTKC(43)GHSF 0 1 0 nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1;nc|ENSG00000143207|Q8NHY2-5|COP1 nc|ENSG00000143207|Q8NHY2-2|COP1 nc|ENSG00000143207|Q8NHY2-2|COP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.1766967773438 3 401.17581 1200.5056 0.015206 6.1004E-06 0.757 0.00030369 0.77221 0.00030979 401.17646718762876 25.395 0.3057 22.512 22.371 22.677 -2.8831 34 16 3 0 0 0 0.12584 1 13904 13904 42.835 33.859 1 7007800 4076 5478 2724 2786 4729 4729 562 -0.08663335174310305 AYNAVSFTW 9 Unmodified _AYNAVSFTW_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7213134765625 2 529.750724 1057.4869 NaN NaN NaN NaN NaN NaN NaN 76.093 1 76.141 75.641 76.641 0.047943 0 0 0 0.33856 1 41982 41982 23.148 11.508 1 4077 1363 2725 2787 4730 4730 -0.03954805482203483 AYNAVSFTW 9 Unmodified _AYNAVSFTW_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7511596679688 2 529.750724 1057.4869 1.0204 0.00054054 -0.73094 -0.00038721 0.28942 0.00015332 529.7502814951911 83.53 0.46194 77.354 77.125 77.587 -6.1757 36 23 2 0 0 0 0.087258 1 54921 54921 36.044 17.898 1 21247000 4078 1363 2725 2787 4731 4731 -0.03954805482203483 AYNDNWFITF 10 Unmodified _AYNDNWFITF_ 0 0 0 ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.7930297851562 2 645.793121 1289.57169 0.19655 0.00012693 0.36759 0.00023739 0.56414 0.00036432 645.793414822511 99.44 0.19675 99.283 99.18 99.377 -0.1575 17 6 4 0 0 0 0.16688 1 54293 54293 51.63 42.282 1 7237200 4079 2531 2726 2788 4732 4732 -0.061514797362633544 AYNDNWFITF 10 Unmodified _AYNDNWFITF_ 0 0 0 ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.7952880859375 2 645.793121 1289.57169 4.198 0.0027111 -1.6711 -0.0010792 2.527 0.0016319 645.7919819117193 99.314 0.22322 99.286 99.164 99.387 -0.028282 27 7 5 0 0 0 0.16688 1 55147 55147 51.63 42.282 1 88419000 4080 2531 2726 2788 4733 4733 -0.061514797362633544 AYNDNWFITF 10 Unmodified _AYNDNWFITF_ 0 0 0 ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.7920532226562 2 645.793121 1289.57169 1.5614 0.0010083 -1.1051 -0.00071367 0.45628 0.00029466 645.7923382413015 100.84 0.16434 94.661 94.584 94.748 -6.1757 42 10 5 0 0 0 0.1552 1 67501 67501 53.833 43.009 1 908660000 4081 2531 2726 2788 4734 4734 -0.061514797362633544 AYNEGIINLL 10 Unmodified _AYNEGIINLL_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3059692382812 2 560.305864 1118.59717 0.374 0.00020955 0.13726 7.6909E-05 0.51126 0.00028646 560.3059142322719 90.139 0.40675 90.139 89.904 90.311 0 95 28 4 0 0 0 0.19566 2 49882 49783;49882 47.749 27.295 1 8372400 4082 1117 2727 2789 4735;4736 4736 0.04261994786179457 AYNEGIINLL 10 Unmodified _AYNEGIINLL_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.305908203125 2 560.305864 1118.59717 0.62601 0.00035075 -0.17532 -9.8232E-05 0.45069 0.00025252 560.3058360755945 90.66 0.37096 90.166 89.933 90.304 -0.49457 73 20 5 0 0 0 0.1552 2 49562 49466;49562 53.833 23.196 1 33164000 4083 1117 2727 2789 4737;4738 4738 0.04261994786179457 AYNHHIQEL 9 Unmodified _AYNHHIQEL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5210876464844 3 375.520962 1123.54106 -0.34661 -0.00013016 0.77555 0.00029124 0.42895 0.00016108 375.52118528905805 23.679 0.22659 23.679 23.605 23.832 0 22 11 3 0 0 0 0.41742 1 12073 12073 16.149 10.417 1 1642200 4084 2181 2728 2790 4739 4739 -0.01577213330642735 AYNHHIQEL 9 Unmodified _AYNHHIQEL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5214233398438 3 375.520962 1123.54106 0.84669 0.00031795 0.14864 5.5816E-05 0.99533 0.00037377 375.52102416509314 26.376 0.29901 23.424 23.261 23.56 -2.9511 29 15 3 0 0 0 0.32871 1 14544 14544 10.8 7.2124 1 9497600 4085 2181 2728 2790 4740 4740 -0.01577213330642735 AYNKLNVFHW 10 Unmodified _AYNKLNVFHW_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA;ENST00000563762.5_1_15:72640446-72647950:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2244873046875 3 431.224257 1290.65094 1.1166 0.00048149 0.42364 0.00018269 1.5402 0.00066418 431.2244381388954 85.906 0.31033 79.73 79.596 79.907 -6.1757 22 16 2 0 0 0 0.18021 1 56597 56597 30.703 21.636 1 10799000 4086 10446 2729 2791 4741 4741 0.017242120085484203 AYNNQSNRL 9 Unmodified _AYNNQSNRL_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2638549804688 2 540.265062 1078.51557 NaN NaN NaN NaN NaN NaN NaN 18.637 1 18.637 18.137 19.137 0 0 0 0 0.83329 1 9279 9279 3.5965 1.019 1 4087 5299 2730 2792 4742 4742 -0.02054687853046744 AYNNQSNRL 9 Unmodified _AYNNQSNRL_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2657470703125 2 540.265062 1078.51557 NaN NaN NaN NaN NaN NaN NaN 18.839 1 18.839 18.339 19.339 0 0 0 0 0.49196 1 9392 9392 16.149 5.9657 1 4088 5299 2730 2792 4743 4743 -0.02054687853046744 AYNNVKACL 9 Carbamidomethyl (C) _AYNNVKAC(Carbamidomethyl (C))L_ AYNNVKAC(1)L AYNNVKAC(93)L 0 1 0 nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1 nc|ENSG00000124535|Q96S55-4|WRNIP1 nc|ENSG00000124535|Q96S55-4|WRNIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7636108398438 2 526.763309 1051.51206 0.53626 0.00028248 -0.48301 -0.00025443 0.053246 2.8048E-05 526.7632745919685 36.312 0.48756 32.119 31.87 32.358 -4.1928 86 29 4 0 0 0 0.0082281 2 21084 21084;21213 92.822 54.848 1 161060000 4089 3795 2731 2793 4744;4745 4744 384 -0.011630739512838772 AYNPMARDLF 10 Unmodified _AYNPMARDLF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2883911132812 2 599.289691 1196.56483 0.10907 6.5365E-05 -0.30627 -0.00018354 -0.1972 -0.00011818 599.289286272342 60.239 0.19526 59.748 59.671 59.866 -0.49079 13 9 2 0 0 0 0.22237 2 32806 32806;32824 32.037 13.891 1 3002800 4090 10153 2732 2794 4746;4747 4746 -0.02559115888470842 AYNPMARDLF 10 Unmodified _AYNPMARDLF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2896728515625 2 599.289691 1196.56483 -0.24867 -0.00014902 -1.0438 -0.00062554 -1.2925 -0.00077456 599.289124632191 65.564 1.0449 59.388 59.072 60.117 -6.1757 104 60 2 0 0 0 0.078742 2 42596 42462;42596 51.415 21.898 1 49808000 4091 10153 2732 2794 4748;4749 4749 -0.02559115888470842 AYNPMARDLF 10 Oxidation (M) _AYNPM(Oxidation (M))ARDLF_ AYNPM(1)ARDLF AYNPM(46)ARDLF 0 0 1 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2881469726562 2 607.287148 1212.55974 0.60501 0.00036741 -0.49295 -0.00029936 0.11206 6.8053E-05 607.286530534527 52.995 0.3357 47.191 47.03 47.365 -5.8042 28 18 2 0 0 0 0.10406 1 33422 33422 45.74 21.719 1 29878000 4092 10153 2732 2795 4750 4750 1653 -0.03803419751079673 AYNPRPFCKTY 11 Unmodified _AYNPRPFCKTY_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.3283081054688 2 680.329347 1358.64414 NaN NaN NaN NaN NaN NaN NaN 92.573 1 92.092 91.592 92.592 -0.48092 0 0 0 0.94184 1 50596 50596 1.1933 0.59184 1 4093 3126 2733 2796 4751 4751 -0.020834689343246282 AYNSNIPVI 9 Unmodified _AYNSNIPVI_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7659606933594 2 495.766374 989.518196 0.13563 6.724E-05 0.071011 3.5205E-05 0.20664 0.00010244 495.7662120534461 61.766 0.33216 61.766 61.597 61.929 0 29 14 3 0 0 0 0.038285 1 34382 34382 50.855 18.738 1 2964400 4094 7249 2734 2797 4752 4752 0.023017675519099612 AYNSNIPVI 9 Unmodified _AYNSNIPVI_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7677001953125 2 495.766374 989.518196 NaN NaN NaN NaN NaN NaN NaN 62.24 1 61.752 61.252 62.252 -0.48764 0 0 0 0.23581 1 33908 33908 28.487 10.352 1 4095 7249 2734 2797 4753 4753 0.023017675519099612 AYPAIRYLL 9 Unmodified _AYPAIRYLL_ 0 0 0 ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3167114257812 2 540.316035 1078.61752 0.30633 0.00016551 -0.72766 -0.00039317 -0.42133 -0.00022765 540.3157119836384 73.85 0.54053 73.894 73.692 74.233 0.043983 67 24 3 0 0 0 0.087258 3 40751 40646;40751;40867 36.044 3.6003 1 19622000 4096 4435 2735 2798 4754;4755;4756 4755 0.08135210236650892 AYPAIRYLL 9 Unmodified _AYPAIRYLL_ 0 0 0 ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3;ENST00000496863.5_1_1:155679570-155695280:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3157958984375 2 540.316035 1078.61752 0.96554 0.0005217 -0.35098 -0.00018964 0.61456 0.00033206 540.3156668573498 92.073 0.70483 85.897 85.53 86.235 -6.1757 96 41 3 0 0 0 0.14602 3 60996 60743;60874;60996 28.487 10.735 1 33323000 4097 4435 2735 2798 4757;4758;4759 4759 0.08135210236650892 AYPDVTGG 8 Unmodified _AYPDVTGG_ 0 0 0 REV__ENST00000479276.5_1_11:1857361-1857613:+|nuORF REV__ENST00000479276.5_1_11:1857361-1857613:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.1828002929688 2 390.182143 778.349734 NaN NaN NaN NaN NaN NaN NaN 20.101 1 20.111 19.611 20.611 0.0093727 0 0 0 0.97444 1 10243 10243 2.8892 0 1 + 4098 20976 2736 2799 4760 4760 -0.04830714361742139 AYPEDSERRSE 11 Unmodified _AYPEDSERRSE_ 0 0 0 ENSG00000143631|ENST00000368799|FLG;CON__P20930 ENSG00000143631|ENST00000368799|FLG ENSG00000143631|ENST00000368799|FLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2021484375 3 446.868867 1337.58477 0.61443 0.00027457 -2.1539 -0.0009625 -1.5394 -0.00068793 446.86763777207346 27.208 0.19814 27.236 27.153 27.351 0.028664 16 8 3 0 0 0 0.58219 1 14130 14130 6.6235 2.2173 1 11051000 + 4099 174 2737 2800 4761 4761 -0.07051693414814508 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7846069335938 2 558.784233 1115.55391 0.40381 0.00022564 -0.54787 -0.00030614 -0.14406 -8.0498E-05 558.7838884415038 90.343 0.56873 90.343 90.079 90.648 0 101 32 4 0 0 0 0.087258 3 50065 49874;49970;50065 36.044 19.102 1 25594000 4100 8296;8297 2738 2801 4762;4763;4764 4764 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7847900390625 2 558.784233 1115.55391 0.8443 0.00047178 -0.0074281 -4.1507E-06 0.83687 0.00046763 558.7841941048774 90.299 0.44896 90.341 90.104 90.553 0.042175 51 15 4 0 0 0 0.095405 2 50171 50171;50280 34.102 12.356 1 95020000 4101 8296;8297 2738 2801 4765;4766 4765 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1116.162353515625 1 1116.56119 1115.55391 0.88025 0.00098285 -1.4615 -0.0016318 -0.58124 -0.00064899 1116.5600820682573 90.324 0.30592 90.366 90.188 90.494 0.042175 21 10 3 0 0 0 0.15672 1 50151 50151 26.884 16.81 1 16828000 4102 8296;8297 2738 2801 4767 4767 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7843627929688 2 558.784233 1115.55391 1.1302 0.00063152 0.078353 4.3783E-05 1.2085 0.0006753 558.784218524999 99.267 0.538 93.092 92.894 93.432 -6.1757 113 33 4 0 0 0 0.06187 3 65960 65960;66129;66312 42.095 13.608 1 1508999999.9999998 4103 8296;8297 2738 2801 4768;4769;4770 4768 0.0007580500889616815 AYPEYLITF 9 Unmodified _AYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1116.56119 1115.55391 -0.42465 -0.00047415 -0.0011451 -1.2786E-06 -0.42579 -0.00047543 1116.5609354429887 90.366 0.3905 90.366 90.163 90.553 0 0.00016534 0.0001999 NaN 26.884 65 22 4 NaN NaN NaN NaN 0 NaN NaN 0 7503400 4104 8296;8297 2738 2801 0.0007580500889616815 AYPEYLITY 9 Unmodified _AYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7833862304688 2 566.78169 1131.54883 0.39486 0.0002238 0.79007 0.0004478 1.1849 0.0006716 566.7824085423038 72.499 0.30231 72.499 72.334 72.637 0 24 11 3 0 0 0 0.40476 1 40335 40335 18.135 5.6034 1 2046500 4105 8309;2522 2739 2802 4771 4771 -0.011684988537126628 AYPEYLITY 9 Unmodified _AYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7825317382812 2 566.78169 1131.54883 NaN NaN NaN NaN NaN NaN NaN 72.642 1 72.642 72.142 73.142 0 0 0 0 0.84021 1 40446 40446 4.756 2.1785 1 4106 8309;2522 2739 2802 4772 4772 -0.011684988537126628 AYPEYLITY 9 Unmodified _AYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7818603515625 2 566.78169 1131.54883 0.83457 0.00047302 0.70844 0.00040153 1.543 0.00087455 566.7819209134265 72.98 0.3757 72.504 72.341 72.717 -0.47588 43 16 3 0 0 0 0.32235 3 39899 39861;39899;40004 23.148 6.2061 1 2868000 4107 8309;2522 2739 2802 4773;4774;4775 4774 -0.011684988537126628 AYPEYLITY 9 Unmodified _AYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7811889648438 2 566.78169 1131.54883 0.93194 0.00052821 0.18883 0.00010702 1.1208 0.00063523 566.7822663978684 80.377 0.35406 74.202 74.037 74.391 -6.1757 34 19 2 0 0 0 0.11784 2 52811 52667;52811 42.095 16.695 1 30252000 4108 8309;2522 2739 2802 4776;4777 4777 -0.011684988537126628 AYPGQQFYHHY 11 Unmodified _AYPGQQFYHHY_ 0 0 0 REV__ENSG00000164532|ENST00000408931|TBX20 REV__ENSG00000164532|ENST00000408931|TBX20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.8789978027344 3 470.879038 1409.61528 NaN NaN NaN NaN NaN NaN NaN 16.518 1 16.523 16.023 17.023 0.0050564 0 0 0 0.94301 1 8287 8287 0.094841 0 1 + 4109 21922 2740 2803 4778 4778 -0.07313870239090647 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(57)TF 0 0 1 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2581176757812 2 555.257859 1108.50117 0.40909 0.00022715 -0.5517 -0.00030633 -0.14261 -7.9183E-05 555.2576770062769 43.312 0.51733 43.001 42.777 43.295 -0.31039 105 24 6 0 0 0 0.026094 2 22993 22993;23094 57.471 42.633 1 976970000 4110 950 2741 2804 4779;4780 4779 150 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(82)TF 0 0 1 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2586669921875 2 555.257859 1108.50117 0.76703 0.0004259 -0.32312 -0.00017942 0.44391 0.00024649 555.2578265982017 42.985 0.44655 42.97 42.758 43.205 -0.015671 77 20 5 0 0 0 0.009483 2 22966 22966;23066 81.89 61.437 1 157430000 4111 950 2741 2804 4781;4782 4781 150 -0.04874476325562682 AYPHNLMTF 9 Oxidation (M) _AYPHNLM(Oxidation (M))TF_ AYPHNLM(1)TF AYPHNLM(74)TF 0 0 1 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2581176757812 2 555.257859 1108.50117 0.88032 0.0004888 -0.4904 -0.0002723 0.38992 0.0002165 555.2576265700563 48.27 0.68994 43.036 42.675 43.365 -5.2339 187 41 6 0 0 0 0.012148 2 29988 29858;29988 74.423 55.166 1 2124199999.9999998 4112 950 2741 2804 4783;4784 4784 150 -0.04874476325562682 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2601928710938 2 547.260402 1092.50625 0.26338 0.00014414 -0.33299 -0.00018223 -0.069605 -3.8092E-05 547.2601112405624 57.837 0.69979 57.347 57.024 57.724 -0.48974 125 33 5 0 0 0 0.016184 3 31325 31325;31423;31525 67.344 38.351 1 80418000 4113 950 2741 2805 4785;4786;4787 4785 -0.03630172462931114 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.260009765625 2 547.260402 1092.50625 0.77519 0.00042423 -0.48273 -0.00026418 0.29245 0.00016005 547.2604235149271 57.462 0.55659 57.396 57.119 57.675 -0.066036 86 27 4 0 0 0 0.0090851 3 31168 31168;31265;31363 85.357 51.254 1 44413000 4114 950 2741 2805 4788;4789;4790 4788 -0.03630172462931114 AYPHNLMTF 9 Unmodified _AYPHNLMTF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2603149414062 2 547.260402 1092.50625 0.95003 0.00051991 -0.79707 -0.0004362 0.15296 8.3711E-05 547.2601165662992 63.002 1.0254 56.827 56.461 57.487 -6.1757 225 55 6 0 0 0 0.0088174 4 40748 40618;40748;40875;41020 103.75 57.727 1 2213600000 4115 950 2741 2805 4791;4792;4793;4794 4792 -0.03630172462931114 AYPHRLNLF 9 Unmodified _AYPHRLNLF_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5419311523438 3 377.541697 1129.60326 0.33805 0.00012763 0.14164 5.3477E-05 0.47969 0.0001811 377.5416634823804 48.392 0.35751 48.348 48.179 48.536 -0.043694 52 17 4 0 0 0 0.07087 2 26041 26041;26151 39.95 24.701 1 63920000 4116 6956 2742 2806 4795;4796 4795 0.04364557808344216 AYPHRLNLF 9 Unmodified _AYPHRLNLF_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8080444335938 2 565.808908 1129.60326 0.63028 0.00035662 -0.12013 -6.7972E-05 0.51014 0.00028864 565.8087032296584 48.394 0.23692 48.35 48.218 48.455 -0.04369 31 11 3 0 0 0 0.078314 1 26071 26071 50.855 39.215 1 17262000 4117 6956 2742 2806 4797 4797 0.04364557808344216 AYPHRLNLF 9 Unmodified _AYPHRLNLF_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.54150390625 3 377.541697 1129.60326 1.1067 0.00041783 -0.25605 -9.6668E-05 0.85068 0.00032117 377.5415794208997 53.205 0.31017 47.4 47.234 47.544 -5.8042 28 18 2 0 0 0 0.1685 1 33546 33546 26.268 15.469 1 23555000 4118 6956 2742 2806 4798 4798 0.04364557808344216 AYPIIFTAW 9 Unmodified _AYPIIFTAW_ 0 0 0 nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7915649414062 2 541.289485 1080.56442 1.0657 0.00057687 0.098929 5.3549E-05 1.1647 0.00063042 541.7912295581498 101.15 0.11122 94.972 94.907 95.018 -6.1757 14 6 3 0 0 0 0.36964 1 67841 67841 20.871 11.524 1 32882000 4119 2351 2743 2807 4799 4799 0.027358324539818568 AYPKCLHSF 9 Carbamidomethyl (C) _AYPKC(Carbamidomethyl (C))LHSF_ AYPKC(1)LHSF AYPKC(53)LHSF 0 1 0 ENSG00000185347|ENST00000392523|TEDC1;ENST00000551538.5_1_14:105961883-105962582:+|nuORF ENSG00000185347|ENST00000392523|TEDC1 ENSG00000185347|ENST00000392523|TEDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8517456054688 3 374.851543 1121.5328 1.3352 0.00050049 -3.2139 -0.0012047 -1.8787 -0.00070424 374.8495855382743 35.13 2.0137 31.035 30.301 32.315 -4.0951 180 114 4 0 0 0 0.033587 1 20384 20384 53.404 31.867 1 132470000 4120 9366 2744 2808 4800 4800 872 -0.02310483571613986 AYPKCLHSF 9 Carbamidomethyl (C) _AYPKC(Carbamidomethyl (C))LHSF_ AYPKC(1)LHSF AYPKC(52)LHSF 0 1 0 ENSG00000185347|ENST00000392523|TEDC1;ENST00000551538.5_1_14:105961883-105962582:+|nuORF ENSG00000185347|ENST00000392523|TEDC1 ENSG00000185347|ENST00000392523|TEDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.774169921875 2 561.773677 1121.5328 0.95345 0.00053562 -2.1624 -0.0012148 -1.209 -0.00067916 561.7720435179166 35.256 0.89122 31.161 30.718 31.609 -4.0951 84 36 4 0 0 0 0.03568 1 20418 20418 52.268 22.044 1 51209000 4121 9366 2744 2808 4801 4801 872 -0.02310483571613986 AYPNSSLFMFF 11 Unmodified _AYPNSSLFMFF_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-2|TTC39C ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MSMS AL20221201_MKP_PDAC_01 4 662.3077392578125 2 662.307549 1322.60055 NaN NaN NaN NaN NaN NaN NaN 101.82 1 95.648 95.148 96.148 -6.1757 0 0 0 0.33438 1 68351 68351 31.268 10.815 1 4122 7732 2745 2809 4802 4802 -0.047850784314732664 AYPPAPFMHI 10 Oxidation (M) _AYPPAPFM(Oxidation (M))HI_ AYPPAPFM(1)HI AYPPAPFM(50)HI 0 0 1 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2849731445312 2 580.283877 1158.5532 0.083669 4.8552E-05 -0.59393 -0.00034465 -0.51026 -0.0002961 580.2833048721318 54.728 0.63018 54.261 53.948 54.579 -0.46664 56 31 2 0 0 0 0.086532 1 29659 29659 49.669 35.763 1 5313000 4123 5528 2746 2810 4803 4803 1013 -0.019733129117867065 AYPPAPFMHI 10 Unmodified _AYPPAPFMHI_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.802490234375 2 572.28642 1142.55829 0.62573 0.0003581 -2.4724 -0.0014149 -1.8467 -0.0010568 572.7866930217925 76.48 0.15276 70.304 70.219 70.372 -6.1757 14 8 2 0 0 0 0.070077 1 50002 50002 49.669 38.029 1 7983200 4124 5528 2746 2811 4804 4804 -0.007290090491551382 AYPPAPFMHIL 11 Unmodified _AYPPAPFMHIL_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8300170898438 2 628.828452 1255.64235 1.2173 0.00076547 0.79257 0.00049839 2.0099 0.0012639 628.829182256576 98.121 0.21007 91.945 91.817 92.027 -6.1757 31 13 3 0 0 0 0.083339 1 65022 65022 44.407 30.501 1 69510000 4125 5528 2747 2812 4805 4805 0.024755220477572948 AYPQQSPY 8 Unmodified _AYPQQSPY_ 0 0 0 ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.9001159667969 2 477.2218 952.429047 0.1445 6.896E-05 2.1843 0.0010424 2.3288 0.0011113 477.2228404721812 54.529 0.19011 54.062 53.934 54.124 -0.46664 12 9 2 0 0 0 8.7369 1 29509 29509 13.508 0 1 1311600 4126 6163 2748 2813 4806 4806 -0.04907067407611976 AYPRSPDHR 9 Unmodified _AYPRSPDHR_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.2698364257812 2 549.775597 1097.53664 0.97085 0.00053375 1.3819 0.00075974 2.3528 0.0012935 550.2785517944361 99.37 0.22852 93.194 93.113 93.341 -6.1757 21 14 2 0 0 0 0.1325 1 66142 66142 32.305 11.891 1 38080000 + 4127 24192 2749 2814 4807 4807 -0.008226777535355723 AYPSNLISHI 10 Unmodified _AYPSNLISHI_ 0 0 0 REV__ENSG00000037042|ENST00000251412|TUBG2 REV__ENSG00000037042|ENST00000251412|TUBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7984619140625 2 557.798206 1113.58186 0.098135 5.474E-05 0.73632 0.00041072 0.83446 0.00046546 557.7984477500461 69.802 0.49854 69.323 68.949 69.448 -0.47903 44 21 3 0 0 0 0.44373 1 38184 38184 19.257 4.4187 1 1845000 + 4128 17171 2750 2815 4808 4808 0.029611279890104925 AYPSNLISHI 10 Unmodified _AYPSNLISHI_ 0 0 0 REV__ENSG00000037042|ENST00000251412|TUBG2 REV__ENSG00000037042|ENST00000251412|TUBG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.798206 1113.58186 0.098135 5.474E-05 0.73632 0.00041072 0.83446 0.00046546 557.7984477500461 69.802 0.49854 69.323 68.949 69.448 -0.47903 0 0 NaN 19.257 44 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1845000 + 4129 17171 2750 2815 0.029611279890104925 AYPTVKFYF 9 Unmodified _AYPTVKFYF_ 0 0 0 nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF nc|ENSG00000077232|Q8IXB1-2|DNAJC10 nc|ENSG00000077232|Q8IXB1-2|DNAJC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2943115234375 2 568.294768 1134.57498 0.32535 0.00018489 -0.016966 -9.6415E-06 0.30838 0.00017525 568.2946829814912 73.207 0.46829 73.249 73.048 73.516 0.041725 58 21 4 0 0 0 0.13231 2 40295 40295;40411 39.957 29.133 1 27553000 4130 1208 2751 2816 4809;4810 4809 0.013078151084073397 AYPVWTAQL 9 Unmodified _AYPVWTAQL_ 0 0 0 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.77685546875 2 524.776742 1047.53893 0.89364 0.00046896 0.38737 0.00020328 1.281 0.00067225 524.777258860587 82.982 0.56213 76.806 76.608 77.17 -6.1757 45 30 2 0 0 0 0.042911 1 54623 54623 48.346 26.809 1 16159000 4131 1417 2752 2817 4811 4811 0.01706357931561797 AYPYNFSNL 9 Unmodified _AYPYNFSNL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7554321289062 2 544.756007 1087.49746 0.19673 0.00010717 0.27743 0.00015113 0.47417 0.00025831 544.7561408603108 67.261 0.3719 66.779 66.591 66.963 -0.48219 57 16 5 0 0 0 0.087258 2 36708 36708;36817 36.044 18.931 1 12013000 4132 8408 2753 2818 4812;4813 4812 -0.042788228277458984 AYPYNFSNL 9 Unmodified _AYPYNFSNL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 544.756007 1087.49746 0.41904 0.00022827 0.61051 0.00033258 1.0295 0.00056085 544.7564157645795 66.747 0.34818 66.747 66.491 66.839 0 -0.10091 -0.00011308 NaN 36.044 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1405300 4133 8408 2753 2818 -0.042788228277458984 AYPYNFSNL 9 Unmodified _AYPYNFSNL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 544.756007 1087.49746 0.77793 0.00042378 0.97598 0.00053167 1.7539 0.00095545 545.2583888004297 66.818 0.2037 66.836 66.713 66.917 0.018028 -0.011828 0.00028511 NaN 36.044 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3111900 4134 8408 2753 2818 -0.042788228277458984 AYQASCKERF 10 Unmodified _AYQASCKERF_ 0 0 0 ENST00000591611.5_1_17:57955667-57970063:-|nuORF;nc|ENSG00000108423|Q9UJT1-3|TUBD1;nc|ENSG00000108423|Q9UJT1-6|TUBD1;nc|ENSG00000108423|Q9UJT1-5|TUBD1;nc|ENSG00000108423|Q9UJT1-2|TUBD1;ENSG00000108423|ENST00000325752|TUBD1 ENST00000591611.5_1_17:57955667-57970063:-|nuORF ENST00000591611.5_1_17:57955667-57970063:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.5249328613281 3 401.525607 1201.55499 -0.46796 -0.0001879 -0.46358 -0.00018614 -0.93154 -0.00037404 401.5251222364131 24.913 0.14907 24.913 24.802 24.951 0 22 10 4 0 0 0 0.63399 1 12748 12748 5.4027 0 1 2873400 4135 2568 2754 2819 4814 4814 -0.03772303893856588 AYQDRLAYL 9 Unmodified _AYQDRLAYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7898559570312 2 556.790381 1111.56621 0.47918 0.0002668 0.58022 0.00032306 1.0594 0.00058986 556.7906743026308 50.469 0.36031 50.469 50.282 50.643 0 54 16 4 0 0 0 0.021948 2 27773 27773;27886 61.602 17.83 1 69127000 4136 5256 2755 2820 4815;4816 4815 0.014888414719507637 AYQDRLAYL 9 Unmodified _AYQDRLAYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7902221679688 2 556.790381 1111.56621 0.60609 0.00033747 0.042886 2.3879E-05 0.64898 0.00036135 556.7903033931436 50.941 0.38465 50.528 50.394 50.778 -0.41351 53 18 4 0 0 0 0.013609 2 27425 27425;27531 70.332 18.702 1 21597000 4137 5256 2755 2820 4817;4818 4817 0.014888414719507637 AYQDRLAYL 9 Unmodified _AYQDRLAYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7901000976562 2 556.790381 1111.56621 1.1638 0.00064801 -0.55708 -0.00031017 0.60675 0.00033783 556.7903006127775 50.566 0.17873 50.512 50.449 50.628 -0.053871 19 8 3 0 0 0 0.085319 1 27367 27367 36.506 8.8774 1 1781400 4138 5256 2755 2820 4819 4819 0.014888414719507637 AYQDRLAYL 9 Unmodified _AYQDRLAYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7962036132812 2 556.790381 1111.56621 0.61909 0.0003447 2.7511 0.0015318 3.3702 0.0018765 556.7930448485747 56.332 0.64905 50.355 49.95 50.599 -5.9769 85 37 4 0 0 0 0.0086209 2 35872 35872;35994 89.401 43.701 1 200970000 4139 5256 2755 2820 4820;4821 4820 0.014888414719507637 AYQEDPDYLRK 11 Unmodified _AYQEDPDYLRK_ 0 0 0 ENSG00000170961|ENST00000303924|HAS2;nc|ENSG00000103044|O00219-2|HAS3;ENSG00000103044|ENST00000569188|HAS3 ENSG00000170961|ENST00000303924|HAS2 ENSG00000170961|ENST00000303924|HAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5617370605469 3 466.561375 1396.66229 0.031321 1.4613E-05 -0.43326 -0.00020214 -0.40194 -0.00018753 466.56120091896526 54.404 0.37761 53.937 53.746 54.124 -0.46664 56 19 4 0 0 0 0.68427 1 29422 29422 2.6312 0 1 37882000 4140 8053 2756 2821 4822 4822 -0.020170554786318462 AYQHAFLYI 9 Unmodified _AYQHAFLYI_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2909545898438 2 563.290017 1124.56548 0.67376 0.00037952 0.13215 7.4436E-05 0.8059 0.00045396 563.2902610925872 67.503 0.36618 67.021 66.822 67.189 -0.48218 37 15 3 0 0 0 0.042911 1 36845 36845 48.346 34.44 1 5618400 4141 9710 2757 2822 4823 4823 0.008180468229056714 AYQHAFLYI 9 Unmodified _AYQHAFLYI_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2908935546875 2 563.290017 1124.56548 1.0288 0.00057952 0.1349 7.5986E-05 1.1637 0.00065551 563.2900138899417 66.984 0.38191 67.002 66.815 67.197 0.018036 44 18 4 0 0 0 0.016184 1 36745 36745 67.344 48.087 1 15539000 4142 9710 2757 2822 4824 4824 0.008180468229056714 AYQHLFYLL 9 Unmodified _AYQHLFYLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.31396484375 2 584.313492 1166.61243 NaN NaN NaN NaN NaN NaN NaN 84.437 1 83.938 83.438 84.438 -0.49961 0 0 0 0.84564 1 46207 46207 2.0598 0 1 4143 5256;9204 2758 2823 4825 4825 0.03578906374059443 AYQHLFYLL 9 Unmodified _AYQHLFYLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3140258789062 2 584.313492 1166.61243 0.494 0.00028865 -0.42488 -0.00024826 0.06912 4.0388E-05 584.3131808438358 83.496 0.44923 83.56 83.357 83.806 0.063171 64 16 5 0 0 0 0.042911 2 46137 46137;46242 48.346 6.5062 1 536550000 4144 5256;9204 2758 2823 4826;4827 4826 0.03578906374059443 AYQHLFYLL 9 Unmodified _AYQHLFYLL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3128662109375 2 584.313492 1166.61243 -0.11539 -6.7422E-05 0.44451 0.00025973 0.32912 0.00019231 584.3137542374268 98.885 0.22211 92.709 92.602 92.824 -6.1757 30 16 2 0 0 0 0.026094 1 65626 65626 57.471 11.45 1 2840800000 4145 5256;9204 2758 2823 4828 4828 0.03578906374059443 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.296630859375 2 548.295299 1094.57605 0.94598 0.00051867 -4.3329 -0.0023757 -3.387 -0.0018571 548.2938659704816 42.6 0.25052 42.6 42.468 42.718 0 21 12 2 0 0 0 0.07916 1 23092 23092 37.974 19.828 1 1918400 4146 5423 2759 2824 4829 4829 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2954711914062 2 548.295299 1094.57605 0.060215 3.3016E-05 0.58984 0.00032341 0.65006 0.00035642 548.2955122084691 42.841 0.29906 42.531 42.357 42.656 -0.31039 30 12 3 0 0 0 0.011968 1 22739 22739 74.929 39.997 1 15655000 4147 5423 2759 2824 4830 4830 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7962646484375 2 548.295299 1094.57605 0.4966 0.00027228 0.072984 4.0017E-05 0.56959 0.0003123 548.2955138199021 46.876 0.41491 41.796 41.628 42.043 -5.0805 99 55 2 0 0 0 0.0086722 3 28953 28923;28953;29078 88.954 43.802 1 64352000 4148 5423 2759 2824 4831;4832;4833 4832 0.032540294773070855 AYQKQPTIF 9 Unmodified _AYQKQPTIF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.295299 1094.57605 0.39674 0.00021753 -0.64682 -0.00035465 -0.25007 -0.00013711 548.2950557382984 42.537 0.20089 42.528 42.421 42.622 -0.0088196 -0.024501 -0.00065039 NaN 74.929 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3631800 4149 5423 2759 2824 0.032540294773070855 AYQLMTDVF 9 Unmodified _AYQLMTDVF_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2606811523438 2 544.260068 1086.50558 0.52853 0.00028766 1.3399 0.00072926 1.8684 0.0010169 544.2608062759684 81.383 0.56458 80.89 80.7 81.264 -0.49248 56 22 4 0 0 0 0.095405 2 44524 44524;44619 34.102 20.196 1 6861700 4150 780 2760 2825 4834;4835 4834 -0.034210119026511165 AYQLMTDVF 9 Oxidation (M) _AYQLM(Oxidation (M))TDVF_ AYQLM(1)TDVF AYQLM(55)TDVF 0 0 1 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2584228515625 2 552.257525 1102.5005 1.0591 0.0005849 -0.5537 -0.00030578 0.50541 0.00027912 552.2574041211292 71.902 0.4176 65.726 65.502 65.919 -6.1757 66 23 4 0 0 0 0.031062 1 47106 47106 54.774 27.89 1 87101000 4151 780 2760 2826 4836 4836 121 -0.04665315765282685 AYQLTCYFT 9 Unmodified _AYQLTCYFT_ 0 0 0 ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA ENSG00000134216|ENST00000369740|CHIA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.279541015625 2 555.252243 1108.48993 0.97225 0.00053984 0.4544 0.0002523 1.4266 0.00079215 555.2525044913839 81.396 0.24709 80.904 80.792 81.04 -0.49247 17 10 2 0 0 0 0.18882 1 44574 44574 15.847 1.0089 1 454910 4152 4570 2761 2827 4837 4837 -0.05997298419697472 AYQPRPGF 8 Unmodified _AYQPRPGF_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;ENST00000481203.1_1_3:100463567-100467372:+|nuORF nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2410278320312 2 468.240327 934.466101 0.67882 0.00031785 -0.47525 -0.00022253 0.20357 9.5319E-05 468.24025620317855 49.482 0.25433 49.09 48.964 49.218 -0.3923 23 12 3 0 0 0 0.50586 1 26589 26589 34.187 7.8461 1 6231400 4153 3032 2762 2828 4838 4838 -0.003753510711931085 AYQPRPGF 8 Unmodified _AYQPRPGF_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;ENST00000481203.1_1_3:100463567-100467372:+|nuORF nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2365112304688 2 468.240327 934.466101 0.85402 0.00039989 -3.2388 -0.0015165 -2.3848 -0.0011166 468.2392939536734 54.527 0.39838 48.662 48.401 48.799 -5.8653 35 24 2 0 0 0 0.41521 1 34476 34476 42.968 8.7807 1 24768000 4154 3032 2762 2828 4839 4839 -0.003753510711931085 AYQPVVEAF 9 Unmodified _AYQPVVEAF_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2592163085938 2 512.260925 1022.5073 0.19143 9.8062E-05 -3.6043 -0.0018464 -3.4129 -0.0017483 512.2601250416633 62.315 0.15699 62.315 62.189 62.346 0 18 9 3 0 0 0 0.28047 1 34732 34732 18.135 4.6271 1 2244600 4155 974 2763 2829 4840 4840 -0.0030563482238221695 AYQRFEPRAY 10 Unmodified _AYQRFEPRAY_ 0 0 0 ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3272094726562 2 650.825286 1299.63602 0.38281 0.00024914 1.5902 0.0010349 1.973 0.0012841 650.8261904952255 89.85 0.38503 89.349 89.127 89.512 -0.50171 42 19 3 0 0 0 0.70734 1 49159 49159 4.3292 2.8473 1 1704500 4156 5372 2764 2830 4841 4841 -0.0018127985943010572 AYQRKGSAHLF 11 Unmodified _AYQRKGSAHLF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF;ENST00000467542.5_1_13:20411687-20425669:-|nuORF;nc|ENSG00000132950|Q9UJ78-1|ZMYM5;nc|ENSG00000132950|Q9UJ78-5|ZMYM5;ENST00000382909.5_1_13:20398619-20425669:-|nuORF;ENSG00000132950|ENST00000337963|ZMYM5 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5630798339844 3 426.563161 1276.66765 0.35929 0.00015326 0.90392 0.00038558 1.2632 0.00053884 426.56346455949716 54.758 0.14324 54.691 54.622 54.765 -0.066936 10 6 2 0 0 0 0.71341 1 29756 29756 2.6312 0.54523 1 1444700 4157 3595 2765 2831 4842 4842 0.04038712894498531 AYQRQQDFF 9 Unmodified _AYQRQQDFF_ 0 0 0 nc|ENSG00000100592|Q9Y4D1-3|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1 nc|ENSG00000100592|Q9Y4D1-3|DAAM1 nc|ENSG00000100592|Q9Y4D1-3|DAAM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2881469726562 2 601.783087 1201.55162 0.39653 0.00023862 -2.3243 -0.0013987 -1.9278 -0.0011601 601.7816943320062 57.815 0.52778 57.326 56.943 57.471 -0.48974 51 25 4 0 0 0 0.18521 1 31269 31269 16.942 1.0951 1 8216100 4158 16086 2766 2832 4843 4843 -0.04109230676226616 AYQRRWGME 9 Unmodified _AYQRRWGME_ 0 0 0 ENST00000317243.9_1_19:2832388-2833811:+|nuORF ENST00000317243.9_1_19:2832388-2833811:+|nuORF ENST00000317243.9_1_19:2832388-2833811:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.319091796875 2 598.785107 1195.55566 3.6892 0.002209 1.9329 0.0011574 5.6221 0.0033664 598.786410235578 99.386 0.084938 99.355 99.299 99.384 -0.031441 4 2 2 0 0 0 0.19496 1 55198 55198 13.906 3.8321 1 617800 4159 11746 2767 2833 4844 4844 -0.034294644541205344 AYQRYYSL 8 Unmodified _AYQRYYSL_ 0 0 0 KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A;ENST00000478900.5_1_Y:15481200-15591401:-|nuORF;ENST00000474365.1_1_Y:15505723-15591217:-|nuORF;KDM6A|p.S238Lfs*6|1|0.29|ENSG00000147050|chrX:45051767-45051785|CTGCACAAGTAAAAGCAAC/-|frameshift_variant KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2194213867188 2 532.263999 1062.51345 0.20926 0.00011138 0.52975 0.00028197 0.73902 0.00039335 532.7645111108731 65.265 0.17425 64.78 64.64 64.814 -0.48428 10 7 2 0 0 0 8.7369 1 35593 35593 10.183 5.8542 1 1361200 4160 5815 2768 2834 4845 4845 -0.015311165908542534 AYQSIQNYL 9 Unmodified _AYQSIQNYL_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2749633789062 2 550.274564 1098.53457 0.7397 0.00040704 0.90862 0.00049999 1.6483 0.00090703 550.2754861063769 62.351 0.37956 61.864 61.66 62.04 -0.48764 44 17 3 0 0 0 0.07916 1 33949 33949 37.974 22.127 1 9467800 4161 4558 2769 2835 4846 4846 -0.010751512820206699 AYQSIQNYL 9 Unmodified _AYQSIQNYL_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2724609375 2 550.274564 1098.53457 0.98579 0.00054245 -0.2836 -0.00015606 0.70219 0.0003864 550.2747572425011 68.99 0.37708 62.814 62.633 63.011 -6.1757 51 20 3 0 0 0 0.2001 1 45054 45054 23.148 5.0134 1 51766000 4162 4558 2769 2835 4847 4847 -0.010751512820206699 AYQSIQNYL 9 Unmodified _AYQSIQNYL_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 550.274564 1098.53457 0.283 0.00015573 3.059 0.0016833 3.342 0.001839 550.277671187638 61.829 0.30999 61.829 61.641 61.951 0 -0.017192 0.0019589 NaN 37.974 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3472300 4163 4558 2769 2835 -0.010751512820206699 AYRESKRY 8 Unmodified _AYRESKRY_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2411499023438 2 536.780348 1071.54614 0.99709 0.00053522 3.9004 0.0020936 4.8974 0.0026288 536.7814933784807 47.27 0.29715 42.19 42.085 42.382 -5.0805 25 18 2 0 0 0 8.7369 1 29314 29314 24.674 6.5275 1 22009000 4164 945 2770 2836 4848 4848 0.013230905320142483 AYREYLTW 8 Unmodified _AYREYLTW_ 0 0 0 REV__ENST00000416030.1_1_9:76089327-76090080:-|nuORF REV__ENST00000416030.1_1_9:76089327-76090080:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7149047851562 2 551.271824 1100.5291 0.58431 0.00032211 -0.67148 -0.00037017 -0.087168 -4.8053E-05 551.2714011714419 40.791 0.2455 40.488 40.356 40.601 -0.30304 28 11 3 0 0 0 8.7369 1 21641 21641 5.7604 5.7604 1 5945900 + 4165 26767 2771 2837 4849 4849 -0.017148300738199396 AYRHPVCSL 9 Unmodified _AYRHPVCSL_ 0 0 0 REV__ENSG00000142330|ENST00000391984|CAPN10 REV__ENSG00000142330|ENST00000391984|CAPN10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2665405273438 2 523.266019 1044.51748 0.16363 8.562E-05 -1.1827 -0.00061886 -1.0191 -0.00053324 523.2647880878111 58.415 0.39128 57.924 57.679 58.07 -0.49079 37 18 3 0 0 0 0.18465 1 31755 31755 24.674 0 1 3179500 + 4166 20567 2772 2838 4850 4850 -0.0029935036880033294 AYRHPVCSL 9 Unmodified _AYRHPVCSL_ 0 0 0 REV__ENSG00000142330|ENST00000391984|CAPN10 REV__ENSG00000142330|ENST00000391984|CAPN10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.266019 1044.51748 0.16363 8.562E-05 -1.1827 -0.00061886 -1.0191 -0.00053324 523.2647880878111 58.415 0.39128 57.924 57.679 58.07 -0.49079 0 0 NaN 24.674 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3179500 + 4167 20567 2772 2838 -0.0029935036880033294 AYRKDFQQL 9 Unmodified _AYRKDFQQL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2085571289062 3 390.208495 1167.60366 -0.71008 -0.00027708 1.1843 0.00046211 0.47419 0.00018503 390.20908688428796 27.505 0.21065 27.505 27.427 27.638 0 13 9 2 0 0 0 0.34134 1 14177 14177 15.248 8.6181 1 2862400 4168 2065 2773 2839 4851 4851 0.026559327375707653 AYRKDFQQL 9 Unmodified _AYRKDFQQL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2089538574219 3 390.208495 1167.60366 1.3689 0.00053415 0.56505 0.00022049 1.9339 0.00075464 390.2085408712347 30.494 0.25803 26.997 26.812 27.07 -3.497 19 12 2 0 0 0 0.27545 1 17219 17219 18.373 2.6345 1 14677000 4169 2065 2773 2839 4852 4852 0.026559327375707653 AYRKGRKV 8 Unmodified _AYRKGRKV_ 0 0 0 ENSG00000073711|ENST00000264977|PPP2R3A ENSG00000073711|ENST00000264977|PPP2R3A ENSG00000073711|ENST00000264977|PPP2R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 977.6005859375 1 977.600309 976.593033 1.3595 0.001329 0.10451 0.00010217 1.464 0.0014312 977.6004399401914 105.23 0.093475 99.057 99.008 99.102 -6.1757 33 22 2 0 0 0 0.80992 1 70473 70473 0.69038 0 1 72542000 4170 1111 2774 2840 4853 4853 0.10379994873801479 AYRPVSRN 8 Unmodified _AYRPVSRN_ 0 0 0 ENSG00000186918|ENST00000344423|ZNF395 ENSG00000186918|ENST00000344423|ZNF395 ENSG00000186918|ENST00000344423|ZNF395 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7640075683594 2 481.761958 961.509363 NaN NaN NaN NaN NaN NaN NaN 45.396 1 45.368 44.868 45.868 -0.028011 0 0 0 0.85975 1 24385 24385 20.454 1.0146 1 4171 9521 2775 2841 4854 4854 0.027068387060808163 AYRQGHFTY 9 Unmodified _AYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5175170898438 3 381.51744 1141.53049 -0.43491 -0.00016593 0.098454 3.7562E-05 -0.33645 -0.00012836 381.51746778925394 24.857 0.17128 24.857 24.76 24.932 0 20 9 3 0 0 0 0.41742 1 12718 12718 16.149 11.102 1 1373100 4172 6943 2776 2842 4855 4855 -0.034611959850508356 AYRQGHFTY 9 Unmodified _AYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.518310546875 3 381.51744 1141.53049 NaN NaN NaN NaN NaN NaN NaN 25.095 1 25.078 24.578 25.578 -0.017006 0 0 0 0.33856 1 12842 12842 27.629 18.246 1 4173 6943 2776 2842 4856 4856 -0.034611959850508356 AYRQGHFTY 9 Unmodified _AYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2734985351562 2 571.772522 1141.53049 0.59091 0.00033787 -1.0653 -0.00060914 -0.47443 -0.00027127 572.2733875822158 27.214 0.21681 24.177 24.022 24.239 -3.0365 20 10 3 0 0 0 0.16226 1 15082 15082 26.884 2.2098 1 8573500 4174 6943 2776 2842 4857 4857 -0.034611959850508356 AYRRWRWRKRW 11 Unmodified _AYRRWRWRKRW_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.9814453125 2 860.482008 1718.94946 0.094858 8.1623E-05 -0.21272 -0.00018304 -0.11786 -0.00010142 860.9837714392329 93.995 0.2664 93.995 93.883 94.149 0 23 15 2 0 0 0 0.7453 1 51987 51987 0 0 1 522190 + 4175 28098 2777 2843 4858 4858 0.11874727764552517 AYRRWRWRKRW 11 Unmodified _AYRRWRWRKRW_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 860.4810180664062 2 860.482008 1718.94946 NaN NaN NaN NaN NaN NaN NaN 75.982 1 69.806 69.306 70.306 -6.1757 0 0 0 0.9435 1 49704 49704 0 0 1 + 4176 28098 2777 2843 4859 4859 0.11874727764552517 AYSAELQQLK 10 Unmodified _AYSAELQQLK_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8096313476562 2 575.808771 1149.60299 0.74169 0.00042707 0.23376 0.0001346 0.97545 0.00056167 575.808928239632 48.877 0.23555 43.48 43.337 43.572 -5.3961 21 13 3 0 0 0 0.085354 1 30474 30474 49.933 0.37871 1 24625000 + 4177 22080 2778 2844 4860 4860 0.034170932978668134 AYSAELQQLK 10 Unmodified _AYSAELQQLK_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 575.808771 1149.60299 0.71364 0.00041092 -0.58834 -0.00033877 0.1253 7.2148E-05 575.8084721750637 43.065 0.25192 43.049 42.912 43.164 -0.015671 -0.16498 -0.00044329 NaN 49.933 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 12436000 + 4178 22080 2778 2844 0.034170932978668134 AYSAELQQLK 10 Unmodified _AYSAELQQLK_ 0 0 0 REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 575.808771 1149.60299 0.74169 0.00042707 0.23376 0.0001346 0.97545 0.00056167 575.808928239632 48.877 0.23555 43.48 43.337 43.572 -5.3961 0.26598 0.00050346 NaN 49.933 21 13 3 NaN NaN NaN NaN 0 NaN NaN 0 24625000 + 4179 22080 2778 2844 0.034170932978668134 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2817077636719 2 492.28166 982.548768 0.76624 0.0003772 -2.2515 -0.0011084 -1.4853 -0.00073116 492.28085995228855 62.684 0.32731 62.197 61.998 62.326 -0.48617 45 15 4 0 0 0 0.044011 1 34129 34129 47.749 25.012 1 28140000 4180 9678;13935 2779 2845 4861 4861 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2813415527344 2 492.28166 982.548768 0.56048 0.00027591 -0.80375 -0.00039567 -0.24327 -0.00011976 492.28121971101723 62.262 0.50923 62.23 61.966 62.475 -0.032787 71 26 4 0 0 0 0.0082475 2 34053 33940;34053 92.653 58.252 1 189700000 4181 9678;13935 2779 2845 4862;4863 4863 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2817687988281 2 492.28166 982.548768 0.69244 0.00034088 0.027503 1.3539E-05 0.71995 0.00035442 492.2816282510133 67.48 1.0133 61.304 60.962 61.975 -6.1757 150 57 4 0 0 0 0.0086904 4 43809 43809;43931;44067;44199 107.19 61.166 1 419550000 4182 9678;13935 2779 2845 4864;4865;4866;4867 4864 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20221201_MKP_PDAC_01 4 983.5576171875 1 983.556044 982.548768 0.71852 0.0007067 -1.2876 -0.0012664 -0.56908 -0.00055972 983.5551717159759 67.503 0.42731 61.327 61.052 61.48 -6.1757 37 23 2 0 0 0 0.0090524 2 43868 43868;43991 85.642 51.24 1 14967000 4183 9678;13935 2779 2845 4868;4869 4868 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2818298339844 2 492.28166 982.548768 0.72419 0.00035651 -0.31688 -0.00015599 0.40731 0.00020051 492.2814478851209 68.413 0.46277 62.238 61.992 62.455 -6.1757 39 27 2 0 0 0 0.010611 1 44582 44582 78.728 40.754 1 21613000 4184 9678;13935 2779 2845 4870 4870 0.05679545936948216 AYSAKIALF 9 Unmodified _AYSAKIALF_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENST00000474241.1_1_1:98157206-98165091:-|nuORF;ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MSMS AL20221201_MKP_PDAC_01 4 492.2821044921875 2 492.28166 982.548768 NaN NaN NaN NaN NaN NaN NaN 67.984 1 61.809 61.309 62.309 -6.1757 0 0 0 0.030047 1 44341 44341 66.457 37.375 1 4185 9678;13935 2779 2845 4871 4871 0.05679545936948216 AYSDLFRSL 9 Unmodified _AYSDLFRSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.27783203125 2 536.277106 1070.53966 0.045305 2.4296E-05 1.0164 0.00054505 1.0617 0.00056935 536.2778333377065 69.119 0.23413 68.639 68.506 68.74 -0.48071 18 9 2 0 0 0 0.13231 1 37802 37802 29.841 2.9569 1 2923200 4186 8367 2780 2846 4872 4872 0.007211525806269492 AYSDLFRSL 9 Unmodified _AYSDLFRSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.277106 1070.53966 0.59847 0.00032094 2.8077 0.0015057 3.4062 0.0018266 536.2785256151768 68.6 0.20741 68.625 68.54 68.748 0.025146 -0.0066872 0.0015288 NaN 29.841 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1584100 4187 8367 2780 2846 0.007211525806269492 AYSDSRVGF 9 Unmodified _AYSDSRVGF_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1;nc|ENSG00000128965|Q9BUX1-2|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2382202148438 2 501.237981 1000.46141 -0.23376 -0.00011717 0.18841 9.4438E-05 -0.045353 -2.2733E-05 501.2384190812554 33.773 0.20095 33.773 33.688 33.888 0 14 9 2 0 0 0 0.20428 1 17764 17764 22.736 10.205 1 1615200 4188 4104 2781 2847 4873 4873 -0.038802800046028096 AYSEAIFEL 9 Unmodified _AYSEAIFEL_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7584228515625 2 521.758215 1041.50188 0.41283 0.0002154 0.0036155 1.8864E-06 0.41645 0.00021728 521.7581658493875 81.879 0.44996 81.879 81.66 82.11 0 82 24 4 0 0 0 0.013472 2 45468 45368;45468 70.716 19.86 1 14992000 4189 2442 2782 2848 4874;4875 4875 -0.01721358404847706 AYSEAIFEL 9 Unmodified _AYSEAIFEL_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7582397460938 2 521.758215 1041.50188 0.52667 0.0002748 0.061991 3.2345E-05 0.58866 0.00030714 521.7580960520921 82.365 0.40549 81.87 81.698 82.104 -0.4952 41 16 3 0 0 0 0.016184 2 45058 45058;45151 67.344 17.531 1 4505300 4190 2442 2782 2848 4876;4877 4876 -0.01721358404847706 AYSEAIFEL 9 Unmodified _AYSEAIFEL_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.75830078125 2 521.758215 1041.50188 1.2541 0.00065435 -1.3062 -0.00068154 -0.052118 -2.7193E-05 521.7578180161819 89.541 0.78612 83.366 83.022 83.808 -6.1757 97 43 3 0 0 0 0.03327 1 59118 59118 53.576 17.531 1 120230000 4191 2442 2782 2848 4878 4878 -0.01721358404847706 AYSEAIFEL 9 Unmodified _AYSEAIFEL_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.758215 1041.50188 1.7766 0.00092696 -0.15388 -8.0288E-05 1.6227 0.00084667 521.7578446071221 81.79 0.20152 81.85 81.729 81.93 0.059929 -0.016151 -0.00018037 NaN 70.716 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1225800 4192 2442 2782 2848 -0.01721358404847706 AYSGTLLSH 9 Unmodified _AYSGTLLSH_ 0 0 0 REV__ENSG00000112319|ENST00000355286|EYA4 REV__ENSG00000112319|ENST00000355286|EYA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7433471679688 2 474.742899 947.471246 0.93356 0.0004432 0.75566 0.00035874 1.6892 0.00080195 474.74326457973325 80.96 0.33037 80.468 80.271 80.602 -0.49247 23 14 2 0 0 0 0.30562 1 44311 44311 16.942 0 1 2266300 + 4193 18811 2783 2849 4879 4879 -0.004590919992324416 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8692626953125 3 385.869703 1154.58728 0.064071 2.4723E-05 -0.28296 -0.00010918 -0.21888 -8.4461E-05 385.86947512913156 45.638 0.16157 45.313 45.215 45.377 -0.32425 16 8 2 0 0 0 0.15882 1 24371 24371 27.223 7.8613 1 30807000 4194 1378 2784 2850 4880 4880 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8697509765625 3 385.869703 1154.58728 -0.023564 -9.0925E-06 0.39751 0.00015339 0.37394 0.00014429 385.86981425530007 45.321 0.33536 45.293 45.138 45.473 -0.028011 64 17 5 0 0 0 0.18144 2 24388 24285;24388 24.991 24.991 1 753860000 4195 1378 2784 2850 4881;4882 4882 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3009033203125 2 578.300916 1154.58728 0.34264 0.00019815 0.04281 2.4757E-05 0.38545 0.00022291 578.3009834698943 45.326 0.31853 45.298 45.138 45.456 -0.028011 46 16 4 0 0 0 0.0088231 1 24378 24378 103.35 69.251 1 93716000 4196 1378 2784 2850 4883 4883 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3024291992188 2 578.300916 1154.58728 0.89743 0.00051899 -1.626 -0.00094029 -0.72852 -0.00042131 578.3007167673313 49.919 0.6986 44.379 44.125 44.824 -5.5391 116 44 4 0 0 0 0.0084276 2 31248 31108;31248 89.401 65.38 1 179400000 4197 1378 2784 2850 4884;4885 4885 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8700256347656 3 385.869703 1154.58728 1.0482 0.00040446 -0.09024 -3.4821E-05 0.95794 0.00036964 385.86965345716476 66.873 2.7092 60.697 59.266 61.975 -6.1757 288 155 3 0 0 0 0.14594 15 43377 42571;42708;42844;42997;43135;43256;43377;43508;43639;43766;43892;44029;44161;44310;44449 28.495 18.344 1 62788000 4198 1378 2784 2850 4886;4887;4888;4889;4890;4891;4892;4893;4894;4895;4896;4897;4898;4899;4900 4892 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3011474609375 2 578.300916 1154.58728 0.34388 0.00019887 0.11907 6.8859E-05 0.46295 0.00026773 578.3010324361907 65.738 0.5937 59.563 59.304 59.898 -6.1757 52 34 2 0 0 0 0.040337 2 42737 42586;42737 53.404 28.005 1 20403000 4199 1378 2784 2850 4901;4902 4902 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.302978515625 2 578.300916 1154.58728 0.67028 0.00038763 0.39695 0.00022956 1.0672 0.00061718 578.3013081993616 66.841 1.6191 60.665 59.898 61.517 -6.1757 141 91 3 0 0 0 0.0047912 6 43272 43138;43272;43415;43551;43958;44101 142.08 102.12 1 23575000 4200 1378 2784 2850 4903;4904;4905;4906;4907;4908 4904 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8702697753906 3 385.869703 1154.58728 1.1944 0.0004609 -0.014585 -5.628E-06 1.1798 0.00045527 385.86964507151356 68.355 1.1988 62.179 61.975 63.174 -6.1757 127 68 3 0 0 0 0.040683 5 44580 44580;44742;44878;45012;45148 49.554 33.405 1 44227000 4201 1378 2784 2850 4909;4910;4911;4912;4913 4909 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8696594238281 3 385.869703 1154.58728 1.0962 0.00042298 -0.3731 -0.00014397 0.72308 0.00027901 385.86950310601236 69.705 0.44154 63.53 63.243 63.685 -6.1757 33 23 2 0 0 0 0.29507 1 45479 45479 17.443 8.9983 1 17548000 4202 1378 2784 2850 4914 4914 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8703002929688 3 385.869703 1154.58728 1.2845 0.00049563 -0.51722 -0.00019958 0.76724 0.00029606 385.86958468684594 70.224 0.28934 64.048 63.897 64.186 -6.1757 22 16 2 0 0 0 0.20507 1 45893 45893 22.658 10.483 1 16593000 4203 1378 2784 2850 4915 4915 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20221201_MKP_PDAC_01 4 578.3012084960938 2 578.300916 1154.58728 NaN NaN NaN NaN NaN NaN NaN 67.864 1 61.688 61.188 62.188 -6.1757 0 0 0 0.020126 1 44243 44243 129.77 78.143 1 4204 1378 2784 2850 4916 4916 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20221201_MKP_PDAC_01 4 578.301025390625 2 578.300916 1154.58728 NaN NaN NaN NaN NaN NaN NaN 68.042 1 61.867 61.367 62.367 -6.1757 0 0 0 0.0017495 1 44381 44381 155.03 117.05 1 4205 1378 2784 2850 4917 4917 0.01616851571452571 AYSHLRYVF 9 Unmodified _AYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20221201_MKP_PDAC_01 4 578.2999267578125 2 578.300916 1154.58728 NaN NaN NaN NaN NaN NaN NaN 68.239 1 62.064 61.564 62.564 -6.1757 0 0 0 0.0017495 1 44524 44524 142.08 107.68 1 4206 1378 2784 2850 4918 4918 0.01616851571452571 AYSIVAGVF 9 Unmodified _AYSIVAGVF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 926.4981079101562 1 926.498195 925.490919 0.72093 0.00066794 -0.91707 -0.00084966 -0.19614 -0.00018172 926.4973215437325 80.954 0.42701 80.461 80.227 80.654 -0.49248 59 20 4 0 0 0 0.03327 1 44339 44339 53.576 6.6547 1 22596000 4207 734 2785 2851 4919 4919 0.025192840115323634 AYSIVAGVF 9 Unmodified _AYSIVAGVF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 926.4981689453125 1 926.498195 925.490919 0.39595 0.00036685 -1.4204 -0.001316 -1.0244 -0.00094911 926.4971114563309 80.387 0.31421 80.445 80.293 80.607 0.057587 26 14 2 0 0 0 0.038285 1 44393 44393 50.855 8.7605 1 27818000 4208 734 2785 2851 4920 4920 0.025192840115323634 AYSIVAGVF 9 Unmodified _AYSIVAGVF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7532958984375 2 463.752736 925.490919 1.179 0.00054675 -0.17162 -7.9588E-05 1.0074 0.00046716 463.7526641839843 88.358 0.59207 82.183 81.939 82.531 -6.1757 78 32 3 0 0 0 0.019979 2 58315 58183;58315 63.563 16.642 1 79144000 4209 734 2785 2851 4921;4922 4922 0.025192840115323634 AYSIVAGVF 9 Unmodified _AYSIVAGVF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 926.5073852539062 1 926.498195 925.490919 1.1381 0.0010545 1.466 0.0013583 2.6042 0.0024128 926.4993480720975 88.372 0.30941 82.197 82.149 82.459 -6.1757 25 16 2 0 0 0 0.018845 1 58272 58272 70.716 17.14 1 116070000 4210 734 2785 2851 4923 4923 0.025192840115323634 AYSIVAGVF 9 Unmodified _AYSIVAGVF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 926.498195 925.490919 0.30224 0.00028002 -0.66693 -0.00061791 -0.36469 -0.00033789 926.4972144971622 80.461 0.20266 80.461 80.365 80.568 0 0.0050546 0.00035517 NaN 53.576 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 410110 4211 734 2785 2851 0.025192840115323634 AYSLNFPLL 9 Unmodified _AYSLNFPLL_ 0 0 0 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2890014648438 2 519.286943 1036.55933 3.2491 0.0016872 -1.3858 -0.00071963 1.8633 0.00096758 519.286041322995 99.635 0.13589 99.599 99.503 99.639 -0.036301 9 4 3 0 0 0 0.0083087 1 55339 55339 97.075 51.054 1 5671300 4212 5232 2786 2852 4924 4924 0.042515285913850676 AYSLNFPLL 9 Unmodified _AYSLNFPLL_ 0 0 0 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2877197265625 2 519.286943 1036.55933 1.6134 0.00083782 0.54521 0.00028312 2.1586 0.0011209 519.287312188287 100.96 0.18152 94.786 94.688 94.869 -6.1757 19 10 3 0 0 0 0.0094915 1 67648 67648 81.864 45.82 1 63405000 4213 5232 2786 2852 4925 4925 0.042515285913850676 AYSLNFPLL 9 Unmodified _AYSLNFPLL_ 0 0 0 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000561693.5_1_15:75648526-75649300:-|nuORF;ENST00000564929.5_1_15:75648526-75649229:-|nuORF nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.286943 1036.55933 0.25428 0.00013204 -1.0995 -0.00057097 -0.84525 -0.00043893 519.7878732809301 99.725 0.11676 99.568 99.496 99.613 -0.1575 -0.015595 0.00019049 NaN 97.075 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 285640 4214 5232 2786 2852 0.042515285913850676 AYSNCQHDF 9 Carbamidomethyl (C) _AYSNC(Carbamidomethyl (C))QHDF_ AYSNC(1)QHDF AYSNC(79)QHDF 0 1 0 ENST00000481464.5_1_1:19927449-19952892:+|nuORF;ENST00000486890.5_1_1:19927449-19950128:+|nuORF;ENSG00000173436|ENST00000322753|MICOS10;ENST00000498642.5_1_1:19923539-19952083:+|nuORF ENST00000481464.5_1_1:19927449-19952892:+|nuORF ENST00000481464.5_1_1:19927449-19952892:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.2221069335938 2 571.222005 1140.42946 NaN NaN NaN NaN NaN NaN NaN 25.005 1 22.122 21.622 22.622 -2.8831 0 0 0 0.019743 1 13651 13651 78.728 49.646 1 4215 8324 2787 2853 4926 4926 799 -0.13514015750092767 AYSNRETIY 9 Unmodified _AYSNRETIY_ 0 0 0 ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000124469|ENST00000244336|CEACAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2780151367188 2 558.769645 1115.52474 0.51293 0.00028661 1.5805 0.00088314 2.0934 0.0011698 558.7704251555746 56.861 0.25157 56.861 56.746 56.998 0 34 10 4 0 0 0 0.46577 1 31634 31634 9.3474 1.4373 1 6360800 4216 3789 2788 2854 4927 4927 -0.028403392873769917 AYSPAIQMF 9 Oxidation (M) _AYSPAIQM(Oxidation (M))F_ AYSPAIQM(1)F AYSPAIQM(67)F 0 0 1 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2469482421875 2 522.24696 1042.47937 0.014267 7.4507E-06 0.72499 0.00037862 0.73925 0.00038607 522.2474273203226 54.761 0.45531 54.294 54.084 54.54 -0.46664 51 22 4 0 0 0 0.016184 1 29756 29756 67.344 31.3 1 13481000 4217 2056 2789 2855 4928 4928 353 -0.040172810741296416 AYSPAIQMF 9 Unmodified _AYSPAIQMF_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2488403320312 2 514.249503 1026.48445 0.61196 0.0003147 0.97923 0.00050357 1.5912 0.00081827 514.2496474729555 73.088 0.35329 72.612 72.386 72.739 -0.47588 31 15 3 0 0 0 0.078417 1 39992 39992 38.151 20.016 1 2154500 4218 2056 2789 2856 4929 4929 -0.027729772114980733 AYSPAIQMF 9 Unmodified _AYSPAIQMF_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2487182617188 2 514.249503 1026.48445 0.85028 0.00043725 -0.49902 -0.00025662 0.35125 0.00018063 514.2493452706628 80.124 0.54025 73.948 73.696 74.236 -6.1757 71 32 3 0 0 0 0.038285 2 52457 52457;52583 50.855 32.72 1 42334000 4219 2056 2789 2856 4930;4931 4930 -0.027729772114980733 AYSPAIQMF 9 Unmodified _AYSPAIQMF_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1027.49365234375 1 1027.49173 1026.48445 0.76733 0.00078842 0.70773 0.00072719 1.4751 0.0015156 1027.4925940328635 80.037 0.10226 73.862 73.822 73.924 -6.1757 8 5 2 0 0 0 2.1289E-06 1 52500 52500 158.2 76.59 1 11881000 4220 2056 2789 2856 4932 4932 -0.027729772114980733 AYSPGEELFF 10 Unmodified _AYSPGEELFF_ 0 0 0 REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.1828002929688 3 387.181723 1158.52334 1.166 0.00045145 1.3939 0.00053968 2.5599 0.00099113 387.1821985240866 34.452 0.41245 30.357 30.106 30.518 -4.0951 43 23 2 0 0 0 0.6192 1 19882 19882 10.151 0 1 40609000 + 4221 20461 2790 2857 4933 4933 -0.04957973376122027 AYSPRFLYI 9 Unmodified _AYSPRFLYI_ 0 0 0 ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3064575195312 2 565.305667 1128.59678 1.2018 0.00067938 0.39953 0.00022585 1.6013 0.00090524 565.3058203071881 70.631 0.39072 70.667 70.444 70.835 0.035515 51 17 4 0 0 0 0.021948 2 38914 38812;38914 61.602 33.973 1 29057000 4222 4355 2791 2858 4934;4935 4935 0.03762619856979654 AYSPRFLYI 9 Unmodified _AYSPRFLYI_ 0 0 0 ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3058471679688 2 565.305667 1128.59678 1.2254 0.00069274 1.3279 0.00075065 2.5533 0.0014434 565.3063251601409 87.211 0.96501 81.035 80.492 81.457 -6.1757 93 52 2 0 0 0 0.013609 2 57271 57271;57653 70.332 70.332 1 41956000 4223 4355 2791 2858 4936;4937 4936 0.03762619856979654 AYSPRHYVI 9 Unmodified _AYSPRHYVI_ 0 0 0 ENSG00000172339|ENST00000370205|ALG14;ENST00000495856.1_1_1:95507120-95538397:-|nuORF ENSG00000172339|ENST00000370205|ALG14 ENSG00000172339|ENST00000370205|ALG14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.197998046875 3 369.197819 1104.57163 0.12249 4.5225E-05 1.5703 0.00057974 1.6928 0.00062496 369.1984142353108 31.656 0.29296 31.526 31.354 31.647 -0.12915 35 11 4 0 0 0 0.55144 1 16528 16528 2.4985 0.65425 1 12315000 4224 8202 2792 2859 4938 4938 0.023525650544115706 AYSQAHLTL 9 Unmodified _AYSQAHLTL_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2627258300781 2 502.263999 1002.51345 0.93629 0.00047026 -2.8968 -0.001455 -1.9605 -0.0009847 502.26194907360593 42.505 0.26328 42.505 42.362 42.625 0 27 12 3 0 0 0 0.095405 1 23005 23005 34.102 9.4286 1 5199500 4225 2588 2793 2860 4939 4939 0.012288834091350509 AYSRVQYQF 9 Unmodified _AYSRVQYQF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2891235351562 2 581.288005 1160.56146 -0.39858 -0.00023169 2.3296 0.0013542 1.931 0.0011225 581.2891620474937 41.211 0.22237 41.211 41.082 41.304 0 18 10 2 0 0 0 0.01958 1 22201 22201 63.961 36.332 1 3173600 4226 4988 2794 2861 4940 4940 -0.012400426708154555 AYSRVQYQF 9 Unmodified _AYSRVQYQF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.287841796875 2 581.288005 1160.56146 -0.24361 -0.00014161 -0.36582 -0.00021265 -0.60944 -0.00035426 581.287844802194 41.568 0.37271 41.265 40.986 41.359 -0.30304 37 16 3 0 0 0 0.0089732 1 21978 21978 86.332 56.491 1 49739000 4227 4988 2794 2861 4941 4941 -0.012400426708154555 AYSRVQYQF 9 Unmodified _AYSRVQYQF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2885131835938 2 581.288005 1160.56146 NaN NaN NaN NaN NaN NaN NaN 41.667 1 41.36 40.86 41.86 -0.30682 0 0 0 0.054801 1 22088 22088 55.503 33.966 1 4228 4988 2794 2861 4942 4942 -0.012400426708154555 AYSRVQYQF 9 Unmodified _AYSRVQYQF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2886352539062 2 581.288005 1160.56146 0.49277 0.00028644 0.15154 8.8091E-05 0.64432 0.00037453 581.288036828905 41.28 0.35098 41.278 41.03 41.381 -0.0017929 39 16 3 0 0 0 0.012668 1 22050 22050 72.968 45.339 1 9597100 4229 4988 2794 2861 4943 4943 -0.012400426708154555 AYSRVQYQF 9 Unmodified _AYSRVQYQF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.287353515625 2 581.288005 1160.56146 0.66849 0.00038859 -0.24438 -0.00014206 0.42411 0.00024653 581.2877888008288 45.943 0.48069 40.988 40.745 41.226 -4.9549 87 31 3 0 0 0 0.0047067 3 28170 28170;28312;28452 118.07 76.229 1 157420000 4230 4988 2794 2861 4944;4945;4946 4944 -0.012400426708154555 AYSSAVYF 8 Unmodified _AYSSAVYF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MSMS AL20221201_MKP_PDAC_01 4 454.2134399414062 2 454.213443 906.412334 NaN NaN NaN NaN NaN NaN NaN 33.141 1 29.284 28.784 29.784 -3.8562 0 0 0 0.9249 1 18981 18981 15.768 0 1 4231 4538 2795 2862 4947 4947 -0.04461568293572782 AYSSILSSL 9 Unmodified _AYSSILSSL_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.5001831054688 1 940.498589 939.491313 -0.52037 -0.00048941 1.4962 0.0014072 0.97583 0.00091776 940.4998101753367 77.228 0.28761 76.746 76.58 76.868 -0.4826 20 12 2 0 0 0 0.052168 1 42235 42235 44.407 2.3125 1 1387700 4232 4362 2796 2863 4948 4948 0.01914658940722802 AYSSYVHQY 9 Unmodified _AYSSYVHQY_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2515869140625 2 559.251089 1116.48762 1.2847 0.00071844 -0.33255 -0.00018598 0.9521 0.00053246 559.2508684133371 35.727 0.40437 31.534 31.351 31.755 -4.1928 63 25 3 0 0 0 0.00856 2 20829 20691;20829 103.75 58.049 1 48476000 4233 852 2797 2864 4949;4950 4950 -0.06596010833141008 AYSTVPGYYSW 11 Unmodified _AYSTVPGYYSW_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.2926025390625 2 647.292953 1292.57135 0.21996 0.00014238 0.01315 8.5119E-06 0.23311 0.00015089 647.2925703818754 68.657 0.32236 68.176 68.053 68.376 -0.48071 36 14 3 0 0 0 0.631 1 37504 37504 17.113 10.907 1 3227900 4234 7391 2798 2865 4951 4951 -0.06322899456085906 AYSTVPGYYSW 11 Unmodified _AYSTVPGYYSW_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.2944946289062 2 647.292953 1292.57135 0.65679 0.00042513 -0.014536 -9.4094E-06 0.64225 0.00041572 647.2927821635468 68.206 0.21022 68.231 68.127 68.337 0.025146 18 10 2 0 0 0 0.62014 1 37509 37509 18.146 11.423 1 2978500 4235 7391 2798 2865 4952 4952 -0.06322899456085906 AYSTVPGYYSW 11 Unmodified _AYSTVPGYYSW_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.2938842773438 2 647.292953 1292.57135 0.71633 0.00046367 0.2293 0.00014842 0.94563 0.0006121 647.2930931824221 75.444 0.54745 69.268 68.995 69.543 -6.1757 81 29 3 0 0 0 0.096911 3 49203 49203;49325;49449 62.573 50.332 1 49319000 4236 7391 2798 2865 4953;4954;4955 4953 -0.06322899456085906 AYSTVSRFF 9 Unmodified _AYSTVSRFF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2723388671875 2 539.271824 1076.5291 -0.043546 -2.3483E-05 -2.7509 -0.0014835 -2.7944 -0.001507 539.7710934118487 56.408 0.22641 56.339 56.212 56.438 -0.068741 21 11 3 0 0 0 0.012668 1 30684 30684 72.968 43.886 1 3956400 4237 5299 2799 2866 4956 4956 -0.006108300738105754 AYSVEHNQL 9 Unmodified _AYSVEHNQL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.756591796875 2 530.756538 1059.49852 -0.34586 -0.00018357 -0.082991 -4.4048E-05 -0.42885 -0.00022761 530.7564752667464 28.632 0.25874 28.632 28.503 28.761 0 38 12 4 0 0 0 0.0090948 1 14765 14765 85.272 45.315 1 72219000 4238 3315 2800 2867 4957 4957 -0.028846084588622034 AYSVEHNQL 9 Unmodified _AYSVEHNQL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7556762695312 2 530.756538 1059.49852 1.0449 0.00055458 -0.18899 -0.00010031 0.85589 0.00045427 530.756405207753 32.373 0.47676 28.517 28.319 28.796 -3.8562 71 26 3 0 0 0 3.6865E-10 3 18340 18340;18465;18595 168.66 120.91 1 199790000 4239 3315 2800 2867 4958;4959;4960 4958 -0.028846084588622034 AYSVLFETF 9 Unmodified _AYSVLFETF_ 0 0 0 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7693481445312 2 538.768583 1075.52261 0.29703 0.00016003 -0.1697 -9.1427E-05 0.12733 6.8603E-05 538.7681334317589 91.495 0.28786 91.003 90.807 91.094 -0.49139 30 13 4 0 0 0 0.37804 1 49964 49964 13.508 5.5977 1 979880 4240 6835 2801 2868 4961 4961 -0.012127680251978745 AYTALKFYL 9 Unmodified _AYTALKFYL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3012084960938 2 545.302593 1088.59063 0.31077 0.00016946 0.10687 5.8274E-05 0.41763 0.00022774 545.302475391796 74.032 0.35345 74.076 73.904 74.258 0.043983 39 15 3 0 0 0 0.015445 2 40760 40760;40860 68.081 28.123 1 8797600 4241 4239 2802 2869 4962;4963 4962 0.04988101625440322 AYTALKFYL 9 Unmodified _AYTALKFYL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20221201_MKP_PDAC_01 4 545.3013916015625 2 545.302593 1088.59063 NaN NaN NaN NaN NaN NaN NaN 90.257 1 84.081 83.581 84.581 -6.1757 0 0 0 0.017438 1 59606 59606 81.89 41.933 1 4242 4239 2802 2869 4964 4964 0.04988101625440322 AYTDCIPQL 9 Carbamidomethyl (C) _AYTDC(Carbamidomethyl (C))IPQL_ AYTDC(1)IPQL AYTDC(82)IPQL 0 1 0 ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7559204101562 2 540.755149 1079.49575 0.66091 0.00035739 1.5339 0.00082945 2.1948 0.0011868 540.7559226986425 69.986 0.37421 63.81 63.615 63.989 -6.1757 51 21 3 0 0 0 0.0095811 2 45645 45645;45769 81.613 41.656 1 73199000 4243 1175 2803 2870 4965;4966 4965 105 -0.04082199908043549 AYTEINKKHCW 11 Carbamidomethyl (C) _AYTEINKKHC(Carbamidomethyl (C))W_ AYTEINKKHC(1)W AYTEINKKHC(52)W 0 1 0 nc|ENSG00000174720|Q4G0J3-2|LARP7;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7;ENST00000512361.1_1_4:113574271-113575339:+|nuORF nc|ENSG00000174720|Q4G0J3-2|LARP7 nc|ENSG00000174720|Q4G0J3-2|LARP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.9031677246094 3 483.902966 1448.68707 -0.074861 -3.6226E-05 0.17602 8.5175E-05 0.10115 4.8949E-05 483.9034338292295 25.502 0.2838 22.619 22.464 22.748 -2.8831 25 15 2 0 0 0 0.04599 1 13946 13946 51.765 45.142 1 4427800 4244 8451 2804 2871 4967 4967 815 -0.01932698876885297 AYTLIAPNI 9 Unmodified _AYTLIAPNI_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000536042.1_1_13:43543884-43566301:-|nuORF;ENST00000540470.5_1_13:43544616-43566301:-|nuORF;ENST00000542706.5_1_13:43543884-43565242:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2789916992188 2 488.279118 974.543683 0.97218 0.0004747 0.40017 0.00019539 1.3723 0.00067009 488.2792671421438 81.211 0.95122 75.036 74.296 75.247 -6.1757 97 53 3 0 0 0 0.0083087 1 53048 53048 97.075 51.054 1 70483000 4245 16196 2805 2872 4968 4968 0.05539242074314643 AYTNVLYAL 9 Unmodified _AYTNVLYAL_ 0 0 0 REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF REV__ENST00000534074.5_1_11:47640387-47650630:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2775268554688 2 514.276575 1026.5386 0.12361 6.357E-05 0.4434 0.00022803 0.56701 0.0002916 514.2767025687963 77.027 0.59505 70.851 70.504 71.1 -6.1757 72 32 3 0 0 0 0.031062 2 50218 50218;50336 54.774 14.325 1 66505000 + 4246 18677 2806 2873 4969;4970 4969 0.026389382117031346 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.771484375 2 509.77146 1017.52837 0.55879 0.00028486 -0.43466 -0.00022158 0.12413 6.3277E-05 509.7711467446814 60.245 0.40354 60.191 59.958 60.362 -0.053062 70 21 4 0 0 0 0.027803 2 32878 32774;32878 56.541 30.2 1 200110000 4247 5068 2807 2874 4971;4972 4972 0.0203037527712695 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7716674804688 2 509.77146 1017.52837 0.14811 7.5503E-05 0.26603 0.00013561 0.41414 0.00021112 509.7715473686836 65.73 0.73118 59.554 59.221 59.952 -6.1757 147 42 5 0 0 0 0.068777 2 42776 42640;42776 40.449 18.609 1 621040000 4248 5068 2807 2874 4973;4974 4974 0.0203037527712695 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7716369628906 2 509.77146 1017.52837 0.38919 0.0001984 0.096089 4.8984E-05 0.48528 0.00024738 509.7710890122324 66.866 0.77328 60.691 60.298 61.071 -6.1757 95 43 3 0 0 0 0.068777 2 43471 43471;43606 40.449 21.01 1 42035000 4249 5068 2807 2874 4975;4976 4975 0.0203037527712695 AYTPFHAVL 9 Unmodified _AYTPFHAVL_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7698059082031 2 509.77146 1017.52837 0.58789 0.00029969 -0.022733 -1.1588E-05 0.56516 0.0002881 509.7715550533792 66.269 0.5058 60.093 59.862 60.368 -6.1757 50 28 3 0 0 0 0.17666 1 43175 43175 19.439 2.3261 1 36707000 4250 5068 2807 2874 4977 4977 0.0203037527712695 AYTRAVMHF 9 Unmodified _AYTRAVMHF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8514404296875 3 365.851655 1094.53313 1.3206 0.00048314 -0.79492 -0.00029082 0.52567 0.00019232 365.85148174910137 40.575 0.42191 36.045 35.806 36.228 -4.5294 57 25 3 0 0 0 0.32871 1 24149 24149 15.248 7.6395 1 32266000 4251 8479 2808 2875 4978 4978 -0.010350638517593325 AYTRAVMHF 9 Unmodified _AYTRAVMHF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7755737304688 2 548.273844 1094.53313 0.61615 0.00033782 -0.55591 -0.00030479 0.060236 3.3026E-05 548.7755131586058 40.537 0.46873 36.008 35.79 36.258 -4.5294 55 28 3 0 0 0 0.025842 1 24217 24217 57.722 43.816 1 13623000 4252 8479 2808 2875 4979 4979 -0.010350638517593325 AYTSELQKL 9 Unmodified _AYTSELQKL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2;nc|ENSG00000182010|Q8IZC4-3|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7859497070312 2 526.784764 1051.55498 0.72504 0.00038194 1.4479 0.00076271 2.1729 0.0011447 526.7848352804014 43.092 0.50871 43.092 42.909 43.418 0 69 25 4 0 0 0 0.082934 1 23338 23338 47.749 17.524 1 149810000 4253 9009 2809 2876 4980 4980 0.03126019377805278 AYTSELQKL 9 Unmodified _AYTSELQKL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2;nc|ENSG00000182010|Q8IZC4-3|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7846069335938 2 526.784764 1051.55498 1.0711 0.00056424 -0.24472 -0.00012892 0.82637 0.00043532 526.784641965813 48.454 0.44801 43.22 42.988 43.436 -5.2339 83 26 4 0 0 0 0.0082981 3 30073 30073;30201;30323 118.89 60.216 1 236930000 4254 9009 2809 2876 4981;4982;4983 4981 0.03126019377805278 AYTSQFVSL 9 Unmodified _AYTSQFVSL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584228515625 2 508.258382 1014.50221 0.35376 0.0001798 -0.30131 -0.00015314 0.052454 2.666E-05 508.2582844772014 64.119 0.37192 64.119 63.93 64.301 0 41 15 4 0 0 0 0.070838 2 35709 35709;35807 39.957 15.937 1 7258800 4255 10085 2810 2877 4984;4985 4984 -0.004459386849816838 AYTSQFVSL 9 Unmodified _AYTSQFVSL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2587585449219 2 508.258382 1014.50221 0.24221 0.00012311 0.023627 1.2009E-05 0.26584 0.00013512 508.2583444263387 64.66 0.45227 64.175 63.929 64.381 -0.48512 64 20 4 0 0 0 0.070838 2 35194 35194;35294 39.957 15.937 1 35137000 4256 10085 2810 2877 4986;4987 4986 -0.004459386849816838 AYTSQFVSL 9 Unmodified _AYTSQFVSL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2581787109375 2 508.258382 1014.50221 0.99491 0.00050567 -0.083739 -4.2561E-05 0.91117 0.00046311 508.2582875493627 71.134 0.55945 64.958 64.646 65.206 -6.1757 69 27 3 0 0 0 0.031062 1 46404 46404 54.774 24.137 1 152390000 4257 10085 2810 2877 4988 4988 -0.004459386849816838 AYTSQFVSL 9 Unmodified _AYTSQFVSL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.258382 1014.50221 1.1078 0.00056307 -0.7413 -0.00037677 0.36653 0.00018629 508.25780521657873 64.217 0.26143 64.206 64.056 64.318 -0.010529 0.039255 -0.00057331 NaN 39.957 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3423500 4258 10085 2810 2877 -0.004459386849816838 AYTTEHWLV 9 Unmodified _AYTTEHWLV_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000526364.1_1_11:125488416-125491330:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.27734375 2 560.277106 1118.53966 0.69372 0.00038867 0.36985 0.00020722 1.0636 0.00059589 560.2772424220905 57.287 0.23323 56.797 56.69 56.923 -0.48974 17 10 2 0 0 0 0.1685 1 31144 31144 36.044 23.513 1 2155700 4259 4654 2811 2878 4989 4989 -0.014868474193917791 AYTTLLNQL 9 Unmodified _AYTTLLNQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7872924804688 2 518.787307 1035.56006 0.65756 0.00034113 -0.7129 -0.00036985 -0.055344 -2.8712E-05 518.7868953529544 75.275 0.42038 74.798 74.559 74.98 -0.47714 71 21 4 0 0 0 0.03327 2 41239 41133;41239 53.576 17.531 1 55532000 4260 4951 2812 2879 4990;4991 4991 0.04370323240414109 AYTTLLNQL 9 Unmodified _AYTTLLNQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7882080078125 2 518.787307 1035.56006 0.28161 0.0001461 0.61449 0.00031879 0.89611 0.00046489 518.7875194842646 74.788 0.36704 74.834 74.573 74.94 0.045967 48 16 4 0 0 0 0.013323 2 41167 41167;41274 71.134 12.455 1 9615000 4261 4951 2812 2879 4992;4993 4992 0.04370323240414109 AYTTLLNQL 9 Unmodified _AYTTLLNQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.787307 1035.56006 0.51526 0.00026731 -1.055 -0.00054734 -0.53978 -0.00028003 518.7866621724787 74.791 0.3823 74.791 74.582 74.965 0 -0.016877 -0.00070857 NaN 71.134 45 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3642300 4262 4951 2812 2879 0.04370323240414109 AYTTVLQEW 9 Unmodified _AYTTVLQEW_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7774658203125 2 555.776939 1109.53933 0.86003 0.00047798 1.4399 0.00080027 2.2999 0.0012783 555.7775475461525 72.804 0.39579 72.328 72.124 72.519 -0.47588 34 15 3 0 0 0 0.18465 1 39800 39800 24.674 8.8267 1 3263200 4263 9933 2813 2880 4994 4994 -0.01106267139243755 AYTTVLQEW 9 Unmodified _AYTTVLQEW_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.77685546875 2 555.776939 1109.53933 0.92644 0.00051489 0.15012 8.3432E-05 1.0766 0.00059832 555.777046875144 80.267 0.58517 74.091 73.806 74.391 -6.1757 82 33 3 0 0 0 0.14602 1 52653 52653 28.487 12.64 1 44590000 4264 9933 2813 2880 4995 4995 -0.01106267139243755 AYTWSRREDRC 11 Unmodified _AYTWSRREDRC_ 0 0 0 REV__ENST00000326080.9_2_5:154217706-154230085:-|nuORF REV__ENST00000326080.9_2_5:154217706-154230085:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 481.891357421875 3 481.55797 1441.65208 NaN NaN NaN NaN NaN NaN NaN 45.75 1 40.795 40.295 41.295 -4.9549 0 0 0 0.93224 1 28143 28143 2.6312 0.19645 1 + 4265 25556 2814 2881 4996 4996 -0.0510794168483244 AYTYWSSHAF 10 Unmodified _AYTYWSSHAF_ 0 0 0 REV__ENSG00000121316|ENST00000240617|PLBD1 REV__ENSG00000121316|ENST00000240617|PLBD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.794677734375 2 616.772188 1231.52982 NaN NaN NaN NaN NaN NaN NaN 71.09 1 70.613 70.113 71.113 -0.47735 0 0 0 0.83398 1 38905 38905 10.824 3.5347 1 + 4266 19288 2815 2882 4997 4997 -0.07668035424785558 AYVADFLGL 9 Unmodified _AYVADFLGL_ 0 0 0 REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7573547363281 2 484.758018 967.501483 NaN NaN NaN NaN NaN NaN NaN 77.79 1 77.79 77.29 78.29 0 0 0 0 0.46757 1 43244 43244 16.942 1.0951 1 + 4267 24044 2816 2883 4998 4998 0.01643266665939791 AYVDKLEEL 9 Unmodified _AYVDKLEEL_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.28564453125 2 540.284597 1078.55464 0.60002 0.00032418 -0.26318 -0.00014219 0.33684 0.00018199 540.2844399043976 50.909 0.30128 50.909 50.765 51.067 0 64 18 5 0 0 0 0.07087 1 28035 28035 39.95 13.682 1 90740000 4268 3530 2817 2884 4999 4999 0.01850599657973362 AYVDTQSTTF 10 Unmodified _AYVDTQSTTF_ 0 0 0 REV__nc|ENSG00000165494|O94913|PCF11 REV__nc|ENSG00000165494|O94913|PCF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7639770507812 2 566.761486 1131.50842 NaN NaN NaN NaN NaN NaN NaN 84.636 1 84.636 84.136 85.136 0 0 0 0 0.96981 1 46917 46917 3.9444 1.3669 1 + 4269 22014 2818 2885 5000 5000 -0.0520746524414335 AYVEDTVLF 9 Unmodified _AYVEDTVLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7666625976562 2 528.76604 1055.51753 0.4152 0.00021955 0.41905 0.00022158 0.83425 0.00044113 528.7664922787985 75.676 0.48112 75.676 75.433 75.914 0 41 20 3 0 0 0 0.10925 2 42123 42021;42123 32.117 18.609 1 2389900 4270 3063 2819 2886 5001;5002 5002 -0.008010718878267653 AYVEDTVLF 9 Unmodified _AYVEDTVLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.84716796875 3 352.846452 1055.51753 1.8989 0.00067001 -0.66394 -0.00023427 1.2349 0.00043575 352.84609753995863 21.335 0.89268 18.6 18.297 19.19 -2.7348 225 63 5 0 0 0 0.39863 2 11357 11357;11473 17.113 12.241 1 1204100000 4271 3063 2819 2886 5003;5004 5003 -0.008010718878267653 AYVEDTVLF 9 Unmodified _AYVEDTVLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MSMS AL20221201_MKP_PDAC_01 4 528.7669067382812 2 528.76604 1055.51753 NaN NaN NaN NaN NaN NaN NaN 21.311 1 18.576 18.076 19.076 -2.7348 0 0 0 0.13852 1 11401 11401 38.151 2.0242 1 4272 3063 2819 2886 5005 5005 -0.008010718878267653 AYVEDTVLF 9 Unmodified _AYVEDTVLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MSMS AL20221201_MKP_PDAC_01 4 528.766845703125 2 528.76604 1055.51753 NaN NaN NaN NaN NaN NaN NaN 21.489 1 18.755 18.255 19.255 -2.7348 0 0 0 0.13852 1 11516 11516 38.151 11.883 1 4273 3063 2819 2886 5006 5006 -0.008010718878267653 AYVEDTVLF 9 Unmodified _AYVEDTVLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MSMS AL20221201_MKP_PDAC_01 4 528.76708984375 2 528.76604 1055.51753 NaN NaN NaN NaN NaN NaN NaN 83.619 1 77.443 76.943 77.943 -6.1757 0 0 0 0.18911 1 54992 54992 32.117 12.678 1 4274 3063 2819 2886 5007 5007 -0.008010718878267653 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.5449829101562 3 369.544996 1105.61316 -0.83123 -0.00030718 -0.28026 -0.00010357 -1.1115 -0.00041075 369.5449032065233 30.412 0.46784 30.412 30.222 30.69 0 93 22 6 0 0 0 0.062454 2 15746 15746;15846 32.898 12.317 1 596120000 4275 3013 2820 2887 5008;5009 5008 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.8143310546875 2 553.813856 1105.61316 -0.43451 -0.00024064 -0.1318 -7.2994E-05 -0.56631 -0.00031363 553.8137592515808 30.412 0.30305 30.412 30.263 30.566 0 51 14 5 0 0 0 0.013118 2 15757 15757;15858 71.708 17.875 1 98409000 4276 3013 2820 2887 5010;5011 5010 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.545654296875 3 369.544996 1105.61316 0.56758 0.00020975 0.94458 0.00034906 1.5122 0.00055881 369.5453349750983 30.415 0.2879 30.335 30.153 30.441 -0.080431 28 10 4 0 0 0 0.062454 1 15780 15780 32.898 13.272 1 5263300 4277 3013 2820 2887 5012 5012 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8139038085938 2 553.813856 1105.61316 0.75991 0.00042085 0.62746 0.0003475 1.3874 0.00076835 553.8143144924824 30.414 0.15872 30.334 30.255 30.414 -0.080431 7 5 2 0 0 0 0.40476 1 15818 15818 12.241 2.8575 1 577100 4278 3013 2820 2887 5013 5013 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5457763671875 3 369.544996 1105.61316 -0.10265 -3.7934E-05 1.0136 0.00037456 0.91093 0.00033663 369.54540098066025 30.16 0.32713 30.19 29.995 30.323 0.030106 36 13 4 0 0 0 0.062454 1 15744 15744 32.898 13.272 1 7027600 4279 3013 2820 2887 5014 5014 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.815673828125 2 553.813856 1105.61316 0.05955 3.298E-05 1.439 0.00079692 1.4985 0.0008299 553.8146735055183 30.163 0.1644 30.194 30.091 30.255 0.030106 12 6 2 0 0 0 0.091924 1 15763 15763 34.932 12.196 1 875550 4280 3013 2820 2887 5015 5015 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5458984375 3 369.544996 1105.61316 1.3864 0.00051233 -0.7805 -0.00028843 0.60588 0.0002239 369.5446024372672 34.449 0.81239 30.353 30.005 30.817 -4.0951 162 47 5 0 0 0 0.062454 4 19685 19685;19812;19936;20067 32.898 13.272 1 1722799999.9999998 4281 3013 2820 2887 5016;5017;5018;5019 5016 0.06457701023077789 AYVEKVERL 9 Unmodified _AYVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8142700195312 2 553.813856 1105.61316 0.82531 0.00045707 -0.083965 -4.6501E-05 0.74134 0.00041056 553.813787188114 34.452 0.57582 30.357 30.023 30.599 -4.0951 113 33 5 0 0 0 0.012668 3 19847 19722;19847;19975 72.968 33.018 1 429520000 4282 3013 2820 2887 5020;5021;5022 5021 0.06457701023077789 AYVELHERLT 10 Unmodified _AYVELHERLT_ 0 0 0 REV__ENSG00000154262|ENST00000284425|ABCA6 REV__ENSG00000154262|ENST00000284425|ABCA6 MSMS AL20221201_MKP_PDAC_01 4 410.5543823242188 3 410.887422 1229.64044 NaN NaN NaN NaN NaN NaN NaN 25.257 1 22.374 21.874 22.874 -2.8831 0 0 0 0.81856 1 13817 13817 7.0371 1.1689 1 + 4283 21219 2821 2888 5023 5023 0.034801845634547135 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.8664245605469 3 360.86607 1079.57638 0.84576 0.00030521 -0.18681 -6.7414E-05 0.65895 0.00023779 360.86598010998716 42.765 0.34223 42.765 42.586 42.928 0 61 17 4 0 0 0 0.040472 2 23121 23121;23242 43.858 27.709 1 84559000 4284 13664 2822 2889 5024;5025 5024 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.794921875 2 540.795466 1079.57638 0.99318 0.0005371 -0.064214 -3.4726E-05 0.92896 0.00050238 540.7945627304201 42.801 0.34373 42.801 42.565 42.909 0 43 17 3 0 0 0 0.016494 2 23133 23133;23253 67.035 43.887 1 20395000 4285 13664 2822 2889 5026;5027 5026 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.8664245605469 3 360.86607 1079.57638 0.13005 4.6929E-05 0.28169 0.00010165 0.41174 0.00014858 360.86612929183855 42.981 0.29575 42.67 42.546 42.842 -0.31039 42 13 4 0 0 0 0.058206 2 22825 22825;22936 37.974 24.932 1 75836000 4286 13664 2822 2889 5028;5029 5028 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7957763671875 2 540.795466 1079.57638 -0.016929 -9.1551E-06 0.18897 0.0001022 0.17204 9.3041E-05 540.7955235432962 42.993 0.2528 42.683 42.568 42.82 -0.31039 27 11 3 0 0 0 0.0089973 1 22839 22839 86.121 54.004 1 17339000 4287 13664 2822 2889 5030 5030 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2012329101562 3 360.86607 1079.57638 1.813 0.00065424 0.13245 4.7797E-05 1.9454 0.00070203 360.86609323135536 47.857 0.69121 42.623 42.327 43.018 -5.2339 134 41 5 0 0 0 0.040472 3 29620 29620;29749;29882 36.127 23.085 1 410930000 4288 13664 2822 2889 5031;5032;5033 5031 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7962036132812 2 540.795466 1079.57638 0.93703 0.00050674 0.87002 0.00047051 1.8071 0.00097725 540.7958550603587 47.885 0.68618 42.651 42.42 43.106 -5.2339 120 41 5 0 0 0 0.0081063 3 29895 29631;29760;29895 93.883 59.781 1 143970000 4289 13664 2822 2889 5034;5035;5036 5036 0.03977449197191163 AYVELVHHI 9 Unmodified _AYVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.86607 1079.57638 0.40167 0.00014495 0.25332 9.1413E-05 0.65498 0.00023636 360.86632707743 42.661 0.16631 42.652 42.539 42.705 -0.0088196 -0.025367 0.0001847 NaN 43.858 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 4434500 4290 13664 2822 2889 0.03977449197191163 AYVEWFNRL 9 Unmodified _AYVEWFNRL_ 0 0 0 nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.306640625 2 599.306198 1196.59784 0.76105 0.0004561 1.6437 0.00098507 2.4047 0.0014412 599.3071494673331 74.647 0.21622 74.171 74.065 74.281 -0.47588 13 8 2 0 0 0 0.37578 1 40889 40889 19.257 8.4331 1 396200 4291 5084 2823 2890 5037 5037 0.0074083422589410475 AYVEWFNRL 9 Unmodified _AYVEWFNRL_ 0 0 0 nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3049926757812 2 599.306198 1196.59784 0.16336 9.7902E-05 0.63404 0.00037998 0.7974 0.00047789 599.3064344684689 74.129 0.40264 74.173 74.006 74.409 0.043983 42 17 4 0 0 0 0.021948 2 40815 40815;40932 78.149 48.309 1 15321000 4292 5084 2823 2890 5038;5039 5038 0.0074083422589410475 AYVEWFNRL 9 Unmodified _AYVEWFNRL_ 0 0 0 nc|ENSG00000138670|Q0VAM2-2|RASGEF1B;nc|ENSG00000138670|Q0VAM2-3|RASGEF1B;ENSG00000138670|ENST00000264400|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B nc|ENSG00000138670|Q0VAM2-2|RASGEF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.306640625 2 599.306198 1196.59784 0.53441 0.00032027 -1.266 -0.00075872 -0.73159 -0.00043844 599.306426881749 89.088 1.1068 82.912 82.132 83.239 -6.1757 122 61 3 0 0 0 0.018061 2 58859 58730;58859 81.89 39.935 1 24233000 4293 5084 2823 2890 5040;5041 5041 0.0074083422589410475 AYVGAGGL 8 Unmodified _AYVGAGGL_ 0 0 0 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 MSMS AL20221201_MKP_PDAC_01 4 354.1915588378906 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 20.456 1 17.763 17.263 18.263 -2.693 0 0 0 0.97444 1 10899 10899 2.8892 0 1 + 4294 29690 2824 2891 5042 5042 6.197226105086884E-05 AYVGDLQTL 9 Unmodified _AYVGDLQTL_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5092163085938 1 979.509488 978.502212 0.11374 0.00011141 -0.2363 -0.00023146 -0.12256 -0.00012005 979.5091459858104 58.887 0.41808 58.887 58.677 59.095 0 54 18 4 0 0 0 0.00069393 2 32824 32721;32824 141.83 34.444 1 23271000 4295 915 2825 2892 5043;5044 5044 0.012100613149868877 AYVGDLQTL 9 Unmodified _AYVGDLQTL_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2587280273438 2 490.258382 978.502212 0.20863 0.00010228 -0.076215 -3.7365E-05 0.13241 6.4917E-05 490.2582759091635 58.868 0.53861 58.868 58.654 59.192 0 67 23 4 0 0 0 0.06187 2 32726 32726;32837 42.095 9.7891 1 62463000 4296 915 2825 2892 5045;5046 5045 0.012100613149868877 AYVGDLQTL 9 Unmodified _AYVGDLQTL_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5091552734375 1 979.509488 978.502212 0.21569 0.00021127 1.6541 0.0016202 1.8698 0.0018315 979.510419511025 59.456 0.23441 58.965 58.814 59.048 -0.49079 13 10 2 0 0 0 0.052168 1 32318 32318 44.407 17.523 1 784800 4297 915 2825 2892 5047 5047 0.012100613149868877 AYVGDLQTL 9 Unmodified _AYVGDLQTL_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.5123901367188 1 979.509488 978.502212 0.43616 0.00042722 0.63759 0.00062453 1.0737 0.0010517 979.5098811635204 66.848 0.40075 60.673 60.489 60.89 -6.1757 55 22 3 0 0 0 0.0082661 2 43414 43414;43544 92.491 23.387 1 46121000 4298 915 2825 2892 5048;5049 5048 0.012100613149868877 AYVGDLQTL 9 Unmodified _AYVGDLQTL_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2587585449219 2 490.258382 978.502212 0.53394 0.00026177 -0.27786 -0.00013622 0.25609 0.00012555 490.2581824546453 66.872 0.57523 60.696 60.428 61.003 -6.1757 92 32 4 0 0 0 0.045537 1 43520 43520 46.921 1.2213 1 150380000 4299 915 2825 2892 5050 5050 0.012100613149868877 AYVGDVPIL 9 Unmodified _AYVGDVPIL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.5252685546875 1 946.52441 945.517133 -0.33834 -0.00032025 0.97909 0.00092673 0.64074 0.00060648 946.5251408663945 77.76 0.42278 77.76 77.561 77.984 0 62 20 4 0 0 0 0.019979 2 43254 43148;43254 63.563 6.0915 1 10651000 4300 5176 2826 2893 5051;5052 5052 0.04219553183008884 AYVGDVPIL 9 Unmodified _AYVGDVPIL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.5266723632812 1 946.52441 945.517133 -0.58105 -0.00054998 1.4282 0.0013518 0.84713 0.00080183 946.5255980063272 78.245 0.2562 77.759 77.608 77.864 -0.48596 20 10 2 0 0 0 0.058206 2 42807 42807;42906 42.968 12.743 1 2258800 4301 5176 2826 2893 5053;5054 5053 0.04219553183008884 AYVGDVPIL 9 Unmodified _AYVGDVPIL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.5249633789062 1 946.52441 945.517133 -0.1297 -0.00012276 0.24258 0.0002296 0.11288 0.00010684 946.5245590616925 85.624 0.67022 79.448 79.107 79.777 -6.1757 69 39 2 0 0 0 0.016494 4 56210 56210;56337;56473;56601 67.035 16.18 1 35168000 4302 5176 2826 2893 5055;5056;5057;5058 5055 0.04219553183008884 AYVGDVPIL 9 Unmodified _AYVGDVPIL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7655029296875 2 473.765843 945.517133 0.3784 0.00017927 -0.068431 -3.2421E-05 0.30997 0.00014685 473.7656307086316 85.519 0.55553 79.344 79.153 79.709 -6.1757 57 32 2 0 0 0 0.019979 3 56267 56267;56404;56540 63.563 12.708 1 21207000 4303 5176 2826 2893 5059;5060;5061 5059 0.04219553183008884 AYVGNLPRI 9 Unmodified _AYVGNLPRI_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7907409667969 2 501.790184 1001.56581 1.3349 0.00066986 -0.69582 -0.00034916 0.63912 0.0003207 501.7898710175946 59.145 0.78987 53.071 52.702 53.492 -6.0745 121 43 4 0 0 0 0.042911 1 38203 38203 48.346 19.859 1 262830000 4304 799 2827 2894 5062 5062 0.06509466542752307 AYVHDVLWAM 10 Unmodified _AYVHDVLWAM_ 0 0 0 REV__ENST00000529672.1_1_11:111613245-111618714:-|nuORF REV__ENST00000529672.1_1_11:111613245-111618714:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2122192382812 3 402.198831 1203.57467 -0.52848 -0.00021255 -0.62204 -0.00025018 -1.1505 -0.00046274 402.53313283196735 35.198 0.30669 35.198 34.958 35.265 0 34 15 3 0 0 0 0.2399 1 18531 18531 1.9064 1.6374 1 1637500 + 4305 18435 2828 2895 5063 5063 -0.018979278830784096 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7651977539062 2 560.765852 1119.51715 -0.25587 -0.00014348 -1.169 -0.00065555 -1.4249 -0.00079903 560.7653342018668 29.769 0.4384 29.769 29.662 30.1 0 81 23 5 0 0 0 0.010877 1 15462 15462 77.984 58.727 1 325410000 4306 5175 2829 2896 5064 5064 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(110)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7662963867188 2 560.765852 1119.51715 0.81846 0.00045897 -1.1196 -0.00062784 -0.30115 -0.00016887 560.7653685560812 29.459 0.31468 29.378 29.211 29.525 -0.080431 84 18 5 0 0 0 0.0077963 2 15189 15189;15300 109.63 80.548 1 861450000 4307 5175 2829 2896 5065;5066 5065 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7656860351562 2 560.765852 1119.51715 0.83499 0.00046823 -1.106 -0.0006202 -0.27101 -0.00015197 560.7653590041774 29.714 0.91588 29.633 29.525 30.441 -0.080429 106 37 5 0 0 0 0.010877 3 15406 15406;15508;15754 77.984 58.727 1 1083800000 4308 5175 2829 2896 5067;5068;5069 5067 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.765869140625 2 560.765852 1119.51715 0.44147 0.00024756 0.60733 0.00034057 1.0488 0.00058813 560.7660317760353 31.305 1.4005 31.202 30.419 31.82 -0.10269 87 56 2 0 0 0 0.010877 3 16279 15961;16279;16387 77.984 61.042 1 3046400 4309 5175 2829 2896 5070;5071;5072 5071 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(67)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7661743164062 2 560.765852 1119.51715 0.13703 7.6842E-05 0.22926 0.00012856 0.36629 0.0002054 560.7659324407316 32.033 0.58783 31.904 31.699 32.287 -0.12915 42 23 2 0 0 0 0.016184 3 16798 16599;16702;16798 67.344 64.063 1 2477600 4310 5175 2829 2896 5073;5074;5075 5075 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(60)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7662963867188 2 560.765852 1119.51715 -0.058774 -3.2958E-05 0.53051 0.00029749 0.47174 0.00026454 560.766243728361 33.278 1.4182 33.119 32.257 33.675 -0.15919 105 59 3 0 0 0 0.023164 3 17230 17004;17119;17230 60.39 46.484 1 2291000 4311 5175 2829 2896 5076;5077;5078 5078 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(67)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.765625 2 560.765852 1119.51715 -0.11675 -6.5472E-05 -1.7833 -0.001 -1.9001 -0.0010655 560.7662745974649 34.792 1.0288 34.601 34.271 35.3 -0.19131 92 46 4 0 0 0 0.016184 2 18188 18188;18359 67.344 37.119 1 3199700 4312 5175 2829 2896 5079;5080 5079 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(51)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7650146484375 2 560.765852 1119.51715 -0.24081 -0.00013504 -1.6435 -0.00092165 -1.8844 -0.0010567 560.7653642116097 36.612 0.70842 36.362 35.845 36.554 -0.2497 54 32 3 0 0 0 0.038285 1 19293 19293 50.855 38.614 1 5155300 4313 5175 2829 2896 5081 5081 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(42)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7667236328125 2 560.765852 1119.51715 0.20576 0.00011538 1.0545 0.00059135 1.2603 0.00070673 560.7664511188548 38.375 0.68037 38.089 37.603 38.283 -0.28687 51 31 2 0 0 0 0.06187 1 20229 20229 42.095 28.587 1 1343100 4314 5175 2829 2896 5082 5082 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2671508789062 2 560.765852 1119.51715 0.46852 0.00026273 -1.0177 -0.00057071 -0.54922 -0.00030799 560.7654392269922 29.342 0.26503 29.372 29.204 29.469 0.030106 42 12 4 0 0 0 0.010877 1 15267 15267 77.984 58.727 1 201790000 4315 5175 2829 2896 5083 5083 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7656860351562 2 560.765852 1119.51715 0.44014 0.00024682 -0.83391 -0.00046763 -0.39377 -0.00022082 560.765507403702 29.551 0.34229 29.581 29.469 29.811 0.030106 54 15 5 0 0 0 0.0086179 2 15476 15368;15476 89.427 70.17 1 152560000 4316 5175 2829 2896 5084;5085 5085 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(47)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7645263671875 2 560.765852 1119.51715 0.23514 0.00013186 -0.88607 -0.00049688 -0.65093 -0.00036502 560.765735653763 36.1 0.57125 36.125 35.885 36.457 0.024971 40 25 2 0 0 0 0.045537 1 19232 19232 46.921 40.198 1 1819000 4317 5175 2829 2896 5086 5086 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(64)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7669677734375 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 33.246 1 33.275 32.775 33.775 0.028934 0 0 0 0.036587 1 17485 17485 63.563 45.428 1 4318 5175 2829 2896 5087 5087 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(110)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7666015625 2 560.765852 1119.51715 0.78357 0.0004394 -0.89832 -0.00050375 -0.11475 -6.435E-05 560.7654247227715 33.023 0.50858 29.167 28.904 29.413 -3.8562 146 31 5 0 0 0 0.0058506 3 18760 18760;18890;19013 114.94 84.719 1 2889800000 4319 5175 2829 2896 5088;5089;5090 5088 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2671508789062 2 560.765852 1119.51715 1.3293 0.00074543 -1.2154 -0.00068154 0.11393 6.3888E-05 561.2667672976487 37.149 1.1823 32.866 32.237 33.42 -4.2835 144 72 3 0 0 0 0.0086179 5 21542 21440;21542;21704;21895;22103 89.427 71.292 1 16617000 4320 5175 2829 2896 5091;5092;5093;5094;5095 5092 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(97)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7661743164062 2 560.765852 1119.51715 1.3111 0.00073524 -0.55359 -0.00031043 0.75754 0.0004248 560.7654961411622 37.955 0.35134 33.586 33.334 33.686 -4.3689 38 20 2 0 0 0 0.0083087 2 22224 22224;22358 97.075 72.084 1 10042000 4321 5175 2829 2896 5096;5097 5096 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.765869140625 2 560.765852 1119.51715 1.6314 0.00091484 0.44287 0.00024834 2.0743 0.0011632 560.765864603122 41.927 0.49733 37.319 36.969 37.467 -4.6079 54 31 2 0 0 0 0.0086179 2 25339 25082;25339 89.427 66.278 1 8746500 4322 5175 2829 2896 5098;5099 5099 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7647705078125 2 560.765852 1119.51715 0.74243 0.00041633 -1.2792 -0.00071731 -0.53673 -0.00030098 560.7651756534109 44.961 0.49137 40.109 39.775 40.267 -4.852 75 36 3 0 0 0 0.0086179 3 27429 27293;27429;27570 89.427 61.798 1 13248000 4323 5175 2829 2896 5100;5101;5102 5101 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(78)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7662963867188 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 35.265 1 31.17 30.67 31.67 -4.0951 0 0 0 0.020354 1 20430 20430 77.984 52.993 1 4324 5175 2829 2896 5103 5103 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(85)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7652587890625 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 35.445 1 31.252 30.752 31.752 -4.1928 0 0 0 0.014922 1 20561 20561 85.357 62.208 1 4325 5175 2829 2896 5104 5104 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(82)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7665405273438 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 36.046 1 31.853 31.353 32.353 -4.1928 0 0 0 0.017457 1 21002 21002 81.864 56.873 1 4326 5175 2829 2896 5105 5105 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(97)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7664794921875 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 36.229 1 32.036 31.536 32.536 -4.1928 0 0 0 0.0079688 1 21135 21135 97.075 72.401 1 4327 5175 2829 2896 5106 5106 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(100)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.766845703125 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 36.457 1 32.264 31.764 32.764 -4.1928 0 0 0 0.0057909 1 21291 21291 101.72 76.323 1 4328 5175 2829 2896 5107 5107 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(100)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7669067382812 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 38.245 1 33.876 33.376 34.376 -4.3689 0 0 0 0.0057909 1 22533 22533 101.72 71.881 1 4329 5175 2829 2896 5108 5108 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(67)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7639770507812 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 38.767 1 34.316 33.816 34.816 -4.4509 0 0 0 0.029091 1 22917 22917 67.344 48.087 1 4330 5175 2829 2896 5109 5109 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(46)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 374.1801147460938 3 374.17966 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.027 1 35.497 34.997 35.997 -4.5294 0 0 0 0.091025 1 23845 23845 45.7 34.205 1 4331 5175 2829 2896 5110 5110 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.764892578125 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 40.263 1 35.733 35.233 36.233 -4.5294 0 0 0 0.011967 1 24025 24025 89.427 70.17 1 4332 5175 2829 2896 5111 5111 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(71)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7657470703125 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 41.525 1 36.917 36.417 37.417 -4.6079 0 0 0 0.026323 1 24948 24948 70.716 51.459 1 4333 5175 2829 2896 5112 5112 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(89)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7654418945312 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 43.272 1 38.508 38.008 39.008 -4.7648 0 0 0 0.011967 1 26263 26263 89.427 64.753 1 4334 5175 2829 2896 5113 5113 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(85)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 560.7662963867188 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 44.451 1 39.599 39.099 40.099 -4.852 0 0 0 0.014922 1 27144 27144 85.357 67.21 1 4335 5175 2829 2896 5114 5114 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ AYVHM(1)VTHF AYVHM(44)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.3302001953125 2 560.765852 1119.51715 1.0396 0.00058298 0.65604 0.00036788 1.6956 0.00095086 560.7661289090579 40.631 0.82073 36.102 35.742 36.563 -4.5294 90 50 2 0 0 0 0.07019 1 24574 24574 44.407 27.465 1 19064000 4336 5175 2829 2896 5115 5115 950 -0.03782770088673715 AYVHMVTHF 9 Oxidation (M) _AYVHM(Oxidation (M))VTHF_ 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.765852 1119.51715 -0.12437 -6.9743E-05 -1.3675 -0.00076685 -1.4919 -0.00083659 560.7652283534304 29.518 0.27114 29.518 29.391 29.662 0 -0.021405 -0.00028618 NaN 89.427 78 17 5 NaN NaN NaN NaN 0 NaN NaN 0 349480000 4337 5175 2829 2896 950 -0.03782770088673715 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8477172851562 3 368.848022 1103.52224 0.0068411 2.5233E-06 -0.16766 -6.1841E-05 -0.16082 -5.9317E-05 368.8479941562725 42.118 0.32405 42.118 41.975 42.299 0 39 16 3 0 0 0 0.2143 2 22741 22741;22850 26.268 15.444 1 32813000 4338 5175 2829 2897 5116;5117 5116 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.767578125 2 552.768394 1103.52224 NaN NaN NaN NaN NaN NaN NaN 42.143 1 42.143 41.643 42.643 0 0 0 0 0.020354 1 22797 22797 77.984 61.042 1 4339 5175 2829 2897 5118 5118 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8475341796875 3 368.848022 1103.52224 -0.010088 -3.7209E-06 -0.33822 -0.00012475 -0.3483 -0.00012847 368.847964816422 42.36 0.77883 42.053 41.859 42.637 -0.30682 106 36 5 0 0 0 0.06187 3 22434 22434;22534;22674 38.176 22.026 1 1783699999.9999998 4340 5175 2829 2897 5119;5120;5121 5119 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7680053710938 2 552.768394 1103.52224 0.14109 7.7989E-05 -0.62135 -0.00034346 -0.48026 -0.00026547 552.7681970613322 42.35 0.33846 42.043 41.9 42.238 -0.30682 50 16 4 0 0 0 0.0086179 2 22452 22452;22556 89.427 67.68 1 305400000 4341 5175 2829 2897 5122;5123 5122 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8486633300781 3 368.848022 1103.52224 NaN NaN NaN NaN NaN NaN NaN 43.018 1 42.707 42.207 43.207 -0.31039 0 0 0 0.50124 1 22871 22871 15.248 11.661 1 4342 5175 2829 2897 5124 5124 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.1822814941406 3 368.848022 1103.52224 -0.014961 -5.5183E-06 -0.46173 -0.00017031 -0.47669 -0.00017582 368.84791113638687 42.097 0.70694 42.088 41.915 42.622 -0.0088196 98 32 5 0 0 0 0.06187 2 22465 22465;22669 38.176 26.681 1 1194400000 4343 5175 2829 2897 5125;5126 5125 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7677001953125 2 552.768394 1103.52224 0.11195 6.1883E-05 -0.55327 -0.00030583 -0.44132 -0.00024395 552.7681931511636 42.093 0.35862 42.084 41.937 42.296 -0.0088196 52 16 5 0 0 0 0.0086629 2 22487 22487;22593 101.72 79.975 1 182000000 4344 5175 2829 2897 5127;5128 5127 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7691650390625 2 552.768394 1103.52224 0.94322 0.00052138 -0.41574 -0.00022981 0.52748 0.00029158 552.7682296222364 48.077 1.8404 42.843 42.327 44.167 -5.2339 300 113 3 0 0 0 0.0058506 9 29604 29604;29738;29868;29999;30131;30260;30389;30518;30651 114.94 96.809 1 396940000 4345 5175 2829 2897 5129;5130;5131;5132;5133;5134;5135;5136;5137 5129 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7709350585938 2 552.768394 1103.52224 1.0832 0.00059878 -0.39409 -0.00021784 0.68916 0.00038094 552.768695393605 49.47 1.1402 44.074 43.973 45.114 -5.3961 162 73 3 0 0 0 0.0086179 5 31381 31081;31238;31381;31420;31587 89.427 63.61 1 55566000 4346 5175 2829 2897 5138;5139;5140;5141;5142 5140 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8483581542969 3 368.848022 1103.52224 1.6387 0.00060444 -0.77168 -0.00028463 0.86703 0.0003198 368.8478265567324 50.966 0.37595 45.317 45.103 45.479 -5.649 31 22 2 0 0 0 0.16226 1 32019 32019 24.991 16.246 1 23260000 4347 5175 2829 2897 5143 5143 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8485107421875 3 368.848022 1103.52224 1.0532 0.00038847 -0.23073 -8.5104E-05 0.82248 0.00030337 368.8479889249145 52.041 0.3007 46.306 46.121 46.422 -5.7345 32 20 2 0 0 0 0.042911 2 32787 32708;32787 36.506 26.742 1 54399000 4348 5175 2829 2897 5144;5145 5145 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8486022949219 3 368.848022 1103.52224 1.1706 0.00043176 -1.3209 -0.00048721 -0.15033 -5.5449E-05 368.8479415927361 55.848 0.4214 49.927 49.753 50.174 -5.9211 51 24 3 0 0 0 0.23158 1 35511 35511 14.405 9.5084 1 38914000 4349 5175 2829 2897 5146 5146 -0.025384662260421464 AYVHMVTHF 9 Unmodified _AYVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20221201_MKP_PDAC_01 4 368.84765625 3 368.848022 1103.52224 NaN NaN NaN NaN NaN NaN NaN 52.817 1 47.033 46.533 47.533 -5.7838 0 0 0 0.36554 1 33348 33348 20.415 15.518 1 4350 5175 2829 2897 5147 5147 -0.025384662260421464 AYVKGGLSTF 10 Unmodified _AYVKGGLSTF_ 0 0 0 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7822875976562 2 521.782025 1041.5495 0.8475 0.00044221 -0.76315 -0.0003982 0.084347 4.4011E-05 521.7818184176164 49.181 0.29803 43.785 43.691 43.989 -5.3961 26 19 2 0 0 0 0.01074 1 30740 30740 86.332 36.399 1 35654000 4351 2908 2830 2898 5148 5148 0.030383405859765844 AYVLNIVRF 9 Unmodified _AYVLNIVRF_ 0 0 0 nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8204956054688 2 547.821484 1093.62842 0.29368 0.00016088 -0.27037 -0.00014811 0.023312 1.2771E-05 547.8212383978448 78.114 0.57269 78.167 77.94 78.512 0.052452 83 23 5 0 0 0 0.0083087 3 43057 43057;43159;43277 97.075 57.117 1 279000000 4352 5467 2831 2899 5149;5150;5151 5149 0.08534612610924341 AYVLNIVRF 9 Unmodified _AYVLNIVRF_ 0 0 0 nc|ENSG00000143153|P05026-2|ATP1B1;ENSG00000143153|ENST00000367815|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 nc|ENSG00000143153|P05026-2|ATP1B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8223876953125 2 547.821484 1093.62842 0.93956 0.00051471 0.61135 0.00033491 1.5509 0.00084962 547.8215234908736 94.825 0.83775 88.649 88.266 89.104 -6.1757 150 47 4 0 0 0 0.012148 2 62691 62691;62813 74.423 45.936 1 291090000 4353 5467 2831 2899 5152;5153 5152 0.08534612610924341 AYVLPQPVEGE 11 Unmodified _AYVLPQPVEGE_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MSMS AL20221201_MKP_PDAC_01 4 601.75390625 2 601.308603 1200.60265 NaN NaN NaN NaN NaN NaN NaN 46.846 1 41.766 41.266 42.266 -5.0805 0 0 0 0.79635 1 29008 29008 12.241 1.4167 1 4354 7690 2832 2900 5154 5154 0.010376735780027957 AYVLRLETL 9 Unmodified _AYVLRLETL_ 0 0 0 ENSG00000240694|ENST00000522362|PNMA2 ENSG00000240694|ENST00000522362|PNMA2 ENSG00000240694|ENST00000522362|PNMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3196411132812 2 539.318774 1076.623 0.35001 0.00018877 0.90646 0.00048887 1.2565 0.00067764 539.3198173784556 67.452 0.36097 66.969 66.758 67.119 -0.48218 24 15 2 0 0 0 0.10247 1 36909 36909 32.786 13.529 1 2757600 4355 10675 2833 2901 5155 5155 0.08774889028472899 AYVNRLDLL 9 Unmodified _AYVNRLDLL_ 0 0 0 nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4 nc|ENSG00000139132|Q96M96|FGD4 nc|ENSG00000139132|Q96M96|FGD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8096313476562 2 538.808574 1075.60259 NaN NaN NaN NaN NaN NaN NaN 62.189 1 61.702 61.202 62.202 -0.48764 0 0 0 0.20976 1 33879 33879 29.841 10.402 1 4356 5125 2834 2902 5156 5156 0.06781718368665679 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7588806152344 2 487.758352 973.502152 0.42118 0.00020543 -0.3429 -0.00016725 0.078276 3.818E-05 487.75814669814326 58.741 0.3833 58.251 58.028 58.412 -0.49079 52 18 4 0 0 0 0.047696 2 31889 31889;31989 45.75 18.331 1 38629000 4357 2526 2835 2903 5157;5158 5157 0.01434106105648425 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7583312988281 2 487.758352 973.502152 0.89359 0.00043586 -0.46704 -0.0002278 0.42655 0.00020806 487.7581848878827 58.345 0.33525 58.285 58.135 58.47 -0.060719 40 16 3 0 0 0 0.047696 2 31745 31745;31846 45.75 22.602 1 14252000 4358 2526 2835 2903 5159;5160 5159 0.01434106105648425 AYVPGFAHI 9 Unmodified _AYVPGFAHI_ 0 0 0 ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2 ENST00000477994.1_1_10:104183924-104192326:-|nuORF ENST00000477994.1_1_10:104183924-104192326:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7588806152344 2 487.758352 973.502152 1.3891 0.00067752 0.3661 0.00017857 1.7552 0.00085609 487.7581944513768 64.051 0.87484 57.875 57.405 58.28 -6.1757 112 46 3 0 0 0 0.028712 3 41518 41383;41518;41646 56.048 25.823 1 180130000 4359 2526 2835 2903 5161;5162;5163 5162 0.01434106105648425 AYVPWIES 8 Unmodified _AYVPWIES_ 0 0 0 REV__nc|ENSG00000237621|Q8NGU1|OR9A1P REV__nc|ENSG00000237621|Q8NGU1|OR9A1P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7439880371094 2 482.742368 963.470183 NaN NaN NaN NaN NaN NaN NaN 75.019 1 75.019 74.519 75.519 0 0 0 0 0.97444 1 41736 41736 2.8892 0 1 + 4360 29960 2836 2904 5164 5164 -0.013013063681455606 AYVQALARF 9 Unmodified _AYVQALARF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2507934570312 2 519.790184 1037.56581 0.072452 3.766E-05 0.14609 7.5935E-05 0.21854 0.0001136 519.7908455969684 56.977 0.23528 56.491 56.369 56.605 -0.48554 14 10 2 0 0 0 0.12183 1 30986 30986 34.102 24.755 1 2038200 4361 944;3759 2837 2905 5165 5165 0.04853466542726892 AYVQALARF 9 Unmodified _AYVQALARF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7904663085938 2 519.790184 1037.56581 0.30632 0.00015922 0.027064 1.4068E-05 0.33339 0.00017329 519.7901289303226 56.678 0.28149 56.609 56.438 56.72 -0.068737 29 13 3 0 0 0 0.010877 1 30818 30818 77.984 51.643 1 18704000 4362 944;3759 2837 2905 5166 5166 0.04853466542726892 AYVQALARF 9 Unmodified _AYVQALARF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.793212890625 2 519.790184 1037.56581 0.69948 0.00036358 0.093425 4.8561E-05 0.7929 0.00041214 519.7902962489655 62.236 0.39323 56.06 55.89 56.283 -6.1757 37 22 2 0 0 0 0.026094 1 40198 40198 57.471 34.323 1 32484000 4363 944;3759 2837 2905 5167 5167 0.04853466542726892 AYVSTSRLF 9 Unmodified _AYVSTSRLF_ 0 0 0 nc|ENSG00000131584|Q96P50-1|ACAP3;ACAP3|p.L773Gfs*13|1|0.15|ENSG00000131584|chr1:1293866-1293867|-/CGGGTCC|frameshift_variant;ENSG00000131584|ENST00000354700|ACAP3;ENST00000478065.5_1_1:1237366-1238730:-|nuORF;ENST00000479108.5_1_1:1237366-1243195:-|nuORF;ENST00000472541.5_1_1:1235057-1244982:-|nuORF nc|ENSG00000131584|Q96P50-1|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8065185546875 2 522.279649 1042.54475 0.7047 0.00036805 0.72093 0.00037653 1.4256 0.00074458 522.2802668145765 50.676 0.21822 50.622 50.49 50.708 -0.053871 18 10 2 0 0 0 0.18118 1 27398 27398 19.257 6.2145 1 945450 4364 7 2838 2906 5168 5168 0.025174564432063562 AYVVKVFSL 9 Unmodified _AYVVKVFSL_ 0 0 0 ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3074951171875 2 513.305136 1024.59572 1.1365 0.0005834 2.0674 0.0010612 3.204 0.0016446 513.3060943926189 71.445 0.19023 71.484 71.344 71.535 0.039024 23 8 3 0 0 0 0.018301 1 39310 39310 65.235 29.108 1 3635500 4365 3873 2839 2907 5169 5169 0.08440405488090619 AYWAGGLHL 9 Unmodified _AYWAGGLHL_ 0 0 0 ENST00000474323.5_1_22:44371844-44392260:+|nuORF;ENSG00000100347|ENST00000350028|SAMM50 ENST00000474323.5_1_22:44371844-44392260:+|nuORF ENST00000474323.5_1_22:44371844-44392260:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2599792480469 2 494.255977 986.497401 0.15185 7.5054E-05 3.2028 0.001583 3.3547 0.0016581 494.25824379449995 58.841 0.10917 58.841 58.768 58.877 0 5 4 2 0 0 0 0.203 1 32783 32783 9.3474 2.9933 1 535580 4366 1802 2840 2908 5170 5170 0.0036122196290762076 AYWKALKVF 9 Unmodified _AYWKALKVF_ 0 0 0 ENST00000553238.5_1_12:113745708-113770716:-|nuORF;nc|ENSG00000089060|Q6J4K2-2|SLC8B1;ENSG00000089060|ENST00000680972|SLC8B1 ENST00000553238.5_1_12:113745708-113770716:-|nuORF ENST00000553238.5_1_12:113745708-113770716:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 563.758056640625 2 563.326402 1124.63825 NaN NaN NaN NaN NaN NaN NaN 86.933 1 80.757 80.257 81.257 -6.1757 0 0 0 0.6032 1 57310 57310 12.532 0 1 4367 1513 2841 2909 5171 5171 0.0809180061630741 AYYCFRLGSG 10 Unmodified _AYYCFRLGSG_ 0 0 0 REV__ENST00000568945.2_1_15:23811631-23811987:+|nuORF REV__ENST00000568945.2_1_15:23811631-23811987:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5105590820312 3 379.511298 1135.51206 -0.40537 -0.00015384 0.30521 0.00011583 -0.10015 -3.801E-05 379.5110971033192 21.515 0.12323 21.515 21.443 21.566 0 21 15 2 0 0 0 0.70734 1 10866 10866 2.086 0.89267 1 637470 + 4368 23099 2842 2910 5172 5172 -0.05027073951282546 AYYDGVAKI 9 Unmodified _AYYDGVAKI_ 0 0 0 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF;chr7:98320298-98355081|62|13.34|0.48|4.79|-|2|BAIAP2L1,None|1 ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2608337402344 2 500.260925 998.507297 1.0875 0.00054405 -0.93111 -0.0004658 0.15642 7.8251E-05 500.26101003740405 42.794 0.28416 42.794 42.644 42.928 0 34 14 3 0 0 0 0.047196 1 23166 23166 46.021 17.534 1 10831000 4369 336 2843 2911 5173 5173 0.007983651776157785 AYYEEQHPEL 10 Unmodified _AYYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.7866821289062 2 639.785492 1277.55643 NaN NaN NaN NaN NaN NaN NaN 37.555 1 37.555 37.055 38.055 0 0 0 0 0.30988 1 19993 19993 36.506 13.77 1 4370 394 2844 2912 5174 5174 -0.07124391324077806 AYYEFKKQFF 10 Unmodified _AYYEFKKQFF_ 0 0 0 ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000538548.5_1_12:132198725-132271134:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.5641784667969 3 457.564168 1369.67067 0.1321 6.0444E-05 -0.22407 -0.00010252 -0.091968 -4.2081E-05 457.56388834300975 53.402 0.14056 53.339 53.241 53.381 -0.063423 11 6 2 0 0 0 0.16005 1 28956 28956 38.615 29.863 1 2555600 4371 843 2845 2913 5175 5175 0.0006254322863696871 AYYESSTM 8 Unmodified _AYYESSTM_ 0 0 0 ENST00000593729.5_1_19:8373659-8373752:-|nuORF ENST00000593729.5_1_19:8373659-8373752:-|nuORF ENST00000593729.5_1_19:8373659-8373752:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.1935729980469 2 476.191851 950.369149 NaN NaN NaN NaN NaN NaN NaN 60.263 1 59.772 59.272 60.272 -0.49079 0 0 0 0.97444 1 32812 32812 2.8892 0.31174 1 4372 15738 2846 2914 5176 5176 -0.10802126133160073 AYYFEYTDT 9 Unmodified _AYYFEYTDT_ 0 0 0 nc|ENSG00000117598|Q32ZL2-2|PLPPR5;ENSG00000117598|ENST00000263177|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1171.690551757812 1 1172.47825 1171.47097 0.96519 0.0011317 2.9453 0.0034533 3.9105 0.004585 1173.4846285087185 83.097 0.33934 83.159 82.942 83.281 0.062714 14 12 2 0 0 0 0.53557 1 45988 45988 8.5933 3.8373 1 17104000 4373 3323 2847 2915 5177 5177 -0.10790556509778071 AYYFGNWAF 9 Unmodified _AYYFGNWAF_ 0 0 0 ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.753662109375 2 569.753267 1137.49198 0.51014 0.00029065 -0.34786 -0.00019819 0.16228 9.2459E-05 569.7529809091881 37.039 0.3811 37.039 36.857 37.238 0 41 18 3 0 0 0 0.19127 1 19639 19639 13.508 0 1 22464000 4374 7730 2848 2916 5178 5178 -0.07126501619563896 AYYFHLQTF 9 Unmodified _AYYFHLQTF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2864990234375 2 595.287474 1188.5604 0.33298 0.00019822 -0.18379 -0.00010941 0.14919 8.881E-05 595.2872339945982 70.165 0.36124 70.2 70.04 70.401 0.035515 38 17 3 0 0 0 0.0095811 1 38634 38634 81.613 58.877 1 3531600 4375 9204 2849 2917 5179 5179 -0.02634257039721888 AYYGGPCE 8 Unmodified _AYYGGPCE_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.3297729492188 1 859.329081 858.321804 0.48351 0.00041549 -1.3831 -0.0011885 -0.89959 -0.00077304 859.3279699557253 73.35 0.51839 73.35 73.005 73.524 0 40 26 2 0 0 0 0.71616 1 40694 40694 15.768 1.1865 1 1959400 + 4376 20360 2850 2918 5180 5180 -0.11302360613501605 AYYNQLCF 8 Unmodified _AYYNQLCF_ 0 0 0 ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2268676757812 2 511.226028 1020.4375 0.85355 0.00043636 -0.018095 -9.2507E-06 0.83545 0.00042711 511.225912991978 48.442 0.36008 43.208 42.973 43.333 -5.2339 35 21 2 0 0 0 0.71616 1 30091 30091 15.768 1.1865 1 22474000 4377 6565 2851 2919 5181 5181 -0.07189836762643154 AYYNQPEQE 9 Unmodified _AYYNQPEQE_ 0 0 0 ENST00000489998.5_1_1:157765891-157772050:-|nuORF;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1 ENST00000489998.5_1_1:157765891-157772050:-|nuORF ENST00000489998.5_1_1:157765891-157772050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2406616210938 2 571.24346 1140.47237 0.41096 0.00023476 -0.65713 -0.00037538 -0.24617 -0.00014063 571.2423514591818 59.003 0.29192 59.003 58.877 59.169 0 33 12 3 0 0 0 0.05447 1 32856 32856 43.858 12.59 1 3595700 4378 7013 2852 2920 5182 5182 -0.09224922421003612 AYYNQPEQE 9 Unmodified _AYYNQPEQE_ 0 0 0 ENST00000489998.5_1_1:157765891-157772050:-|nuORF;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1 ENST00000489998.5_1_1:157765891-157772050:-|nuORF ENST00000489998.5_1_1:157765891-157772050:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.24346 1140.47237 0.46791 0.00026729 1.5819 0.00090365 2.0498 0.0011709 571.2447060789217 59.735 0.34389 59.244 59.048 59.392 -0.49079 0.12019 0.00070992 NaN 43.858 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6713300 4379 7013 2852 2920 -0.09224922421003612 AYYPAGTQLF 10 Unmodified _AYYPAGTQLF_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7793579101562 2 565.779482 1129.54441 0.58755 0.00033243 -0.42078 -0.00023807 0.16677 9.4358E-05 565.7796287034124 77.25 0.42417 71.075 70.938 71.362 -6.1757 33 24 2 0 0 0 0.44373 1 50614 50614 19.257 4.6753 1 13127000 4380 2205 2853 2921 5183 5183 -0.015179632766148643 AYYPAQGVQQF 11 Unmodified _AYYPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.305419921875 2 636.306395 1270.59824 0.30993 0.00019721 -0.26739 -0.00017014 0.042534 2.7065E-05 636.3062678547099 53.12 0.26207 53.12 52.982 53.244 0 28 11 3 0 0 0 0.16973 1 29418 29418 34.402 25.054 1 3542300 4381 3070;16132 2854 2922 5184 5184 -0.02623790844904761 AYYPAQGVQQF 11 Unmodified _AYYPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3067626953125 2 636.306395 1270.59824 0.14918 9.4926E-05 -0.42596 -0.00027104 -0.27677 -0.00017611 636.3059773968091 53.808 0.33656 53.342 53.17 53.507 -0.46664 45 16 4 0 0 0 0.025642 1 29101 29101 56.177 40.929 1 11797000 4382 3070;16132 2854 2922 5185 5185 -0.02623790844904761 AYYPAQGVQQF 11 Unmodified _AYYPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3076782226562 2 636.306395 1270.59824 0.95321 0.00060653 0.087775 5.5852E-05 1.041 0.00066238 636.3063743892536 60.946 0.40208 54.798 54.594 54.996 -6.1478 54 21 3 0 0 0 1.3103E-08 2 39285 39155;39285 107.19 79.558 1 70524000 4383 3070;16132 2854 2922 5186;5187 5187 -0.02623790844904761 AYYPCAHHT 9 Unmodified _AYYPCAHHT_ 0 0 0 REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF REV__ENST00000511697.1_1_17:46919069-46919841:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7276000976562 2 531.726726 1061.4389 1.2047 0.00064058 0.93904 0.00049931 2.1438 0.0011399 531.7272042428032 96.273 0.92546 90.098 89.696 90.622 -6.1757 83 55 2 0 0 0 0.46577 1 64054 64054 9.3474 2.6243 1 15105000 + 4384 28159 2855 2923 5188 5188 -0.08936202673885418 AYYPYGQFQYG 11 Unmodified _AYYPYGQFQYG_ 0 0 0 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8671569824219 3 452.868027 1355.58225 -0.1505 -6.8157E-05 -2.3897 -0.0010822 -2.5402 -0.0011504 452.8668739986237 35.099 0.19009 35.099 34.977 35.167 0 19 9 3 0 0 0 0.73114 1 18562 18562 1.3296 0 1 3168800 4385 8002 2856 2924 5189 5189 -0.08131497081808448 AYYPYGQFQYG 11 Unmodified _AYYPYGQFQYG_ 0 0 0 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 452.868027 1355.58225 -0.4532 -0.00020524 -1.9879 -0.00090027 -2.4411 -0.0011055 452.86723485455684 35.247 0.21174 35.024 34.917 35.128 -0.2224 -0.037371 0.00019663 NaN 1.3296 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1873400 4386 8002 2856 2924 -0.08131497081808448 AYYSHLEGARF 11 Unmodified _AYYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5474548339844 3 438.547288 1312.62004 0.13 5.7009E-05 0.22156 9.7166E-05 0.35156 0.00015418 438.547332224801 39.944 0.20552 39.647 39.53 39.735 -0.29716 22 9 3 0 0 0 0.63561 1 21096 21096 9.5301 3.3383 1 2530300 4387 5401 2857 2925 5190 5190 -0.023769860963511746 AYYSHLEGARF 11 Unmodified _AYYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS AL20221201_MKP_PDAC_01 4 438.5479125976562 3 438.547288 1312.62004 NaN NaN NaN NaN NaN NaN NaN 44.165 1 39.313 38.813 39.813 -4.852 0 0 0 0.50899 1 26926 26926 24.229 12.054 1 4388 5401 2857 2925 5191 5191 -0.023769860963511746 AYYSHLEGARF 11 Unmodified _AYYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS AL20221201_MKP_PDAC_01 4 438.5457153320312 3 438.547288 1312.62004 NaN NaN NaN NaN NaN NaN NaN 44.36 1 39.508 39.008 40.008 -4.852 0 0 0 0.72333 1 27070 27070 9.5301 4.8142 1 4389 5401 2857 2925 5192 5192 -0.023769860963511746 AYYTRSVGMT 10 Unmodified _AYYTRSVGMT_ 0 0 0 REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.77197265625 2 574.773874 1147.53319 -0.01662 -9.5528E-06 -1.7402 -0.0010002 -1.7568 -0.0010098 574.772750794192 37.352 0.33337 37.081 36.897 37.23 -0.27133 29 13 4 0 0 0 0.44171 1 19611 19611 19.362 0.10495 1 2711600 + 4390 28754 2858 2926 5193 5193 -0.03467108642394123 AYYTRSVGMT 10 Unmodified _AYYTRSVGMT_ 0 0 0 REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7731323242188 2 574.773874 1147.53319 -0.11081 -6.3692E-05 -1.3749 -0.00079025 -1.4857 -0.00085394 574.7729738773312 36.994 0.40392 37.015 36.836 37.24 0.021545 56 18 4 0 0 0 0.23548 2 19572 19572;19671 31.268 13.122 1 19742000 + 4391 28754 2858 2926 5194;5195 5194 -0.03467108642394123 AYYTRSVGMT 10 Unmodified _AYYTRSVGMT_ 0 0 0 REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF REV__ENST00000554631.2_1_14:95624549-95624717:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.773874 1147.53319 -0.01662 -9.5528E-06 -1.7402 -0.0010002 -1.7568 -0.0010098 574.772750794192 37.352 0.33337 37.081 36.897 37.23 -0.27133 0.032825 -0.00024728 NaN 31.268 29 13 4 NaN NaN NaN NaN 0 NaN NaN 0 2711600 + 4392 28754 2858 2926 -0.03467108642394123 AYYYQKYEDMW 11 Unmodified _AYYYQKYEDMW_ 0 0 0 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 780.3289794921875 2 780.32921 1558.64387 NaN NaN NaN NaN NaN NaN NaN 51.047 1 51.047 50.547 51.547 0 0 0 0 0.9435 1 28171 28171 0 0 1 + 4393 21416 2859 2927 5196 5196 -0.11310933444838156 CAAASEWLFH 10 Unmodified _CAAASEWLFH_ 0 0 0 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8396606445312 3 378.839415 1133.49641 -0.069809 -2.6446E-05 0.55107 0.00020877 0.48127 0.00018232 378.83954782831364 32.212 0.40026 32.083 31.866 32.266 -0.12915 28 15 2 0 0 0 0.65502 1 16770 16770 4.1895 0 1 2641400 + 4394 19038 2860 2928 5197 5197 -0.06499360468319537 CACFRLVK 8 Unmodified _CACFRLVK_ 0 0 0 REV__ENSG00000153898|ENST00000370608|MCOLN2 REV__ENSG00000153898|ENST00000370608|MCOLN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2469177246094 2 470.248783 938.483013 NaN NaN NaN NaN NaN NaN NaN 97.615 1 97.373 96.873 97.873 -0.24277 0 0 0 0.97444 1 53304 53304 0.79363 0 1 + 4395 21193 2861 2929 5198 5198 0.01131110218750564 CAERGPRLEAF 11 Unmodified _CAERGPRLEAF_ 0 0 0 REV__ENST00000412793.5_3_8:27238223-27255065:+|nuORF REV__ENST00000412793.5_3_8:27238223-27255065:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.81005859375 2 624.811322 1247.60809 0.37776 0.00023603 -1.8548 -0.0011589 -1.477 -0.00092287 624.8106208332472 63.836 0.27833 63.351 63.213 63.492 -0.48512 24 15 2 0 0 0 0.50515 1 34802 34802 16.149 3.9084 1 5427400 + 4396 26725 2862 2930 5199 5199 -0.00580926111183544 CAFPKEGTHF 10 Unmodified _CAFPKEGTHF_ 0 0 0 REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8464050292969 3 379.511298 1135.51206 0.19033 7.2231E-05 -0.20464 -7.7663E-05 -0.014313 -5.4319E-06 379.5112626489597 24.965 0.37308 24.959 24.753 25.127 -0.0062332 47 15 5 0 0 0 0.70895 1 12675 12675 1.9064 0.25375 1 113390000 + 4397 23919 2863 2931 5200 5200 -0.05027073951282546 CAFPKEGTHF 10 Unmodified _CAFPKEGTHF_ 0 0 0 REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF REV__ENST00000530879.1_1_8:146029451-146033777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5111999511719 3 379.511298 1135.51206 0.61173 0.00023216 -0.60774 -0.00023064 0.0039947 1.5161E-06 379.5110721637027 29.081 0.208 29.019 28.876 29.084 -0.062159 21 8 3 0 0 0 0.69126 1 15026 15026 3.8763 0.28927 1 14694000 + 4398 23919 2863 2931 5201 5201 -0.05027073951282546 CAFPSVAFY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))AFPSVAFY_ C(1)AFPSVAFY C(54)AFPSVAFY 0 1 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.244140625 2 531.241678 1060.4688 1.1644 0.00061859 1.6559 0.00087971 2.8204 0.0014983 531.2427669689977 86.821 0.22034 80.645 80.567 80.788 -6.1757 14 11 2 0 0 0 0.03327 1 57240 57240 53.576 25.089 1 7460300 4399 16188 2864 2932 5202 5202 1015 -0.059012637285604796 CAGRAEAP 8 Unmodified _CAGRAEAP_ 0 0 0 ENST00000434837.7_1_6:37664674-37664983:-|nuORF ENST00000434837.7_1_6:37664674-37664983:-|nuORF ENST00000434837.7_1_6:37664674-37664983:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.6810302734375 2 387.681788 773.349022 NaN NaN NaN NaN NaN NaN NaN 69.491 1 69.522 69.022 70.022 0.030914 0 0 0 0.95607 1 38201 38201 9.3474 4.1168 1 4400 13305 2865 2933 5203 5203 -0.046718322824631286 CAGSRLRL 8 Unmodified _CAGSRLRL_ 0 0 0 CON__P02777 CON__P02777 CON__P02777 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2645263671875 2 438.247629 874.480705 NaN NaN NaN NaN NaN NaN NaN 102.72 1 102.67 102.17 103.17 -0.047928 0 0 0 0.97444 1 57052 57052 0.79363 0 1 + 4401 163 2866 2934 5204 5204 0.038443978052896455 CAIDQDPYF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))AIDQDPYF_ C(1)AIDQDPYF C(55)AIDQDPYF 0 1 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7369995117188 2 564.736957 1127.45936 -0.01076 -6.0766E-06 -0.71609 -0.00040441 -0.72685 -0.00041048 564.7368986721284 56.353 0.42478 56.353 56.184 56.609 0 54 19 4 0 0 0 0.031062 2 31391 31287;31391 54.774 25.692 1 18118000 4402 5208 2867 2935 5205;5206 5206 532 -0.09927076804751778 CAIDQDPYF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))AIDQDPYF_ C(1)AIDQDPYF C(55)AIDQDPYF 0 1 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7379760742188 2 564.736957 1127.45936 1.5814 0.00089309 -0.28314 -0.0001599 1.2983 0.00073319 564.7369408127763 64.45 0.82361 58.274 57.861 58.684 -6.1757 126 44 4 0 0 0 0.031062 2 41843 41701;41843 54.774 25.692 1 117710000 4403 5208 2867 2935 5207;5208 5208 532 -0.09927076804751778 CAKLSKGNGQ 10 Unmodified _CAKLSKGNGQ_ 0 0 0 REV__nc|ENSG00000160051|Q4KMZ1-3|IQCC REV__nc|ENSG00000160051|Q4KMZ1-3|IQCC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2598571777344 2 503.260933 1004.50731 NaN NaN NaN NaN NaN NaN NaN 26.587 1 26.555 26.055 27.055 -0.031708 0 0 0 0.95103 1 13674 13674 5.7319 0.50118 1 + 4404 29731 2868 2936 5209 5209 0.0052404190596462286 CAMGIIIVM 9 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))AM(Oxidation (M))GIIIVM(Oxidation (M))_ C(1)AMGIIIVM CAM(1)GIIIVM(1) C(46)AMGIIIVM CAM(46)GIIIVM(46) 0 1 2 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2536010742188 2 520.252874 1038.49119 0.25636 0.00013337 -2.0754 -0.0010797 -1.819 -0.00094636 520.252074796384 56.581 0.32449 56.581 56.403 56.728 0 34 13 3 0 0 0 0.047696 1 31450 31450 45.75 17.577 1 4394000 4405 1530 2869 2937 5210 5210 144 257;258 -0.026511236467740673 CAMGIIIVM 9 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))AM(Oxidation (M))GIIIVM(Oxidation (M))_ C(1)AMGIIIVM CAM(1)GIIIVM(1) C(46)AMGIIIVM CAM(46)GIIIVM(46) 0 1 2 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2507934570312 2 520.252874 1038.49119 0.29801 0.00015504 -2.3469 -0.001221 -2.0489 -0.001066 520.2521424857691 57.14 0.40941 56.651 56.387 56.796 -0.48861 62 18 4 0 0 0 0.047696 2 30986 30986;31091 45.75 17.577 1 21029000 4406 1530 2869 2937 5211;5212 5211 144 257;258 -0.026511236467740673 CAMGIIIVM 9 Carbamidomethyl (C),2 Oxidation (M) _C(Carbamidomethyl (C))AM(Oxidation (M))GIIIVM(Oxidation (M))_ C(1)AMGIIIVM CAM(1)GIIIVM(1) C(56)AMGIIIVM CAM(56)GIIIVM(56) 0 1 2 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2537231445312 2 520.252874 1038.49119 0.43523 0.00022643 -1.1025 -0.0005736 -0.66732 -0.00034717 520.2527457870146 56.759 0.37847 56.691 56.497 56.876 -0.068741 50 18 4 0 0 0 0.028712 1 30884 30884 56.048 10.298 1 8424800 4407 1530 2869 2937 5213 5213 144 257;258 -0.026511236467740673 CAMGIIIVM 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))AMGIIIVM(Oxidation (M))_ C(1)AMGIIIVM CAMGIIIVM(1) C(46)AMGIIIVM CAM(-43)GIIIVM(43) 0 1 1 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2550048828125 2 512.255417 1022.49628 NaN NaN NaN NaN NaN NaN NaN 72.516 1 72.04 71.54 72.54 -0.47609 0 0 0 0.09083 1 39684 39684 45.75 17.577 2 4408 1530 2869 2938 5214 5214 144 257;258 -0.01406819784176605 CAMGIIIVM 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))AMGIIIVM(Oxidation (M))_ C(1)AMGIIIVM CAMGIIIVM(1) C(56)AMGIIIVM CAM(-54)GIIIVM(54) 0 1 1 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2552490234375 2 512.255417 1022.49628 1.0708 0.00054853 -3.5242 -0.0018053 -2.4534 -0.0012568 512.2533942853831 79.791 0.45639 73.615 73.335 73.791 -6.1757 38 27 2 0 0 0 0.028712 2 52256 52256;52401 56.048 17.577 2 14037000 4409 1530 2869 2938 5215;5216 5215 144 257;258 -0.01406819784176605 CANQPKVWGE 10 Unmodified _CANQPKVWGE_ 0 0 0 ENST00000264156.2_1_2:136622707-136623729:-|nuORF ENST00000264156.2_1_2:136622707-136623729:-|nuORF ENST00000264156.2_1_2:136622707-136623729:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.2623901367188 2 566.266216 1130.51788 NaN NaN NaN NaN NaN NaN NaN 41.476 1 36.869 36.369 37.369 -4.6079 0 0 0 0.80141 1 24913 24913 12.241 0.60036 1 4410 11306 2870 2939 5217 5217 -0.04215975439592512 CAQCQDWCCNY 11 Unmodified _CAQCQDWCCNY_ 0 0 0 REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2 REV__nc|ENSG00000139154|Q6ZN18-3|AEBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.514892578125 2 668.714318 1335.41408 NaN NaN NaN NaN NaN NaN NaN 32.811 1 32.652 32.152 33.152 -0.15918 0 0 0 0.9435 1 17097 17097 0 0 1 + 4411 20389 2871 2940 5218 5218 -0.24020709925434858 CAQKHISIYVE 11 Unmodified _CAQKHISIYVE_ 0 0 0 ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF ENST00000263461.10_1_10:122668275-122668440:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8882751464844 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 103.62 1 103.51 103.01 104.01 -0.10458 0 0 0 0.94184 1 56517 56517 0.40827 0.13925 1 4412 11293 2872 2941 5219 5219 0.010571113458354375 CARFLALCISN 11 Unmodified _CARFLALCISN_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8057861328125 2 605.807193 1209.59983 NaN NaN NaN NaN NaN NaN NaN 54.836 1 54.37 53.87 54.87 -0.46664 0 0 0 0.83999 1 29730 29730 10.151 2.5416 1 4413 3160 2873 2942 5220 5220 0.0034180364782514516 CARTHRCWFH 10 Unmodified _CARTHRCWFH_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.7976684570312 2 658.798026 1315.5815 -0.025261 -1.6642E-05 -0.7916 -0.00052151 -0.81686 -0.00053815 659.2988714156622 93.31 0.20648 93.31 93.201 93.407 0 23 14 2 0 0 0 0.72464 1 51570 51570 0 0 1 281500 + 4414 24200 2874 2943 5221 5221 -0.06366893483527747 CARYMDVRE 9 Unmodified _CARYMDVRE_ 0 0 0 ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5085144042969 3 381.507559 1141.50085 0.20085 7.6625E-05 1.0579 0.00040361 1.2588 0.00048024 381.50801554076395 59.365 0.20264 59.365 59.241 59.443 0 11 8 2 0 0 0 0.56345 1 33085 33085 2.086 0.63089 1 1776000 4415 13910 2875 2944 5222 5222 -0.06424219317068491 CARYMDVRE 9 Unmodified _CARYMDVRE_ 0 0 0 ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5076904296875 3 381.507559 1141.50085 NaN NaN NaN NaN NaN NaN NaN 59.777 1 59.777 59.277 60.277 0 0 0 0 0.83329 1 33322 33322 2.086 0.63089 1 4416 13910 2875 2944 5223 5223 -0.06424219317068491 CASATSLQY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))ASATSLQY_ C(1)ASATSLQY C(71)ASATSLQY 0 1 0 ENST00000569380.5_1_16:1827100-1828231:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000564709.5_1_16:1827100-1828401:-|nuORF ENST00000569380.5_1_16:1827100-1828231:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3 ENSG00000162032|ENST00000566339|SPSB3 MSMS AL20221201_MKP_PDAC_01 4 500.7235107421875 2 500.723849 999.433146 NaN NaN NaN NaN NaN NaN NaN 41.179 1 36.571 36.071 37.071 -4.6079 0 0 0 0.026323 1 24688 24688 70.716 47.567 1 4417 15456;6829 2876 2945 5224 5224 674 -0.06659345976220266 CASDKILEF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))ASDKILEF_ C(1)ASDKILEF C(52)ASDKILEF 0 1 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7625732421875 2 541.762975 1081.5114 0.60592 0.00032826 -0.15621 -8.463E-05 0.4497 0.00024363 541.7633734054762 54.794 0.41299 54.794 54.641 55.054 0 37 17 3 0 0 0 0.036857 1 30395 30395 51.63 30.093 1 7917400 4418 8612 2877 2946 5225 5225 824 -0.0260991339098382 CASLLRREL 9 Unmodified _CASLLRREL_ 0 0 0 REV__nc|ENSG00000136883|Q96FN5|KIF12 REV__nc|ENSG00000136883|Q96FN5|KIF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2021789550781 3 354.202576 1059.5859 0.84539 0.00029944 -1.5797 -0.00055952 -0.73426 -0.00026008 354.2020848969798 23.334 0.25491 20.555 20.445 20.7 -2.7784 38 18 3 0 0 0 0.51218 1 12605 12605 4.1895 1.1172 1 5402000 + 4419 20194 2878 2947 5226 5226 0.05848894211044353 CASSVLTAF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))ASSVLTAF_ C(1)ASSVLTAF C(71)ASSVLTAF 0 1 0 ENST00000514023.5_1_3:125743683-125802950:-|nuORF;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3 ENST00000514023.5_1_3:125743683-125802950:-|nuORF ENST00000514023.5_1_3:125743683-125802950:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.2311706542969 2 478.23131 954.448068 NaN NaN NaN NaN NaN NaN NaN 72.027 1 65.852 65.352 66.352 -6.1757 0 0 0 0.026323 1 47127 47127 70.716 40.079 1 4420 3046 2879 2948 5227 5227 313 -0.030978541082163247 CAWLMMSRLHY 11 Unmodified _CAWLMMSRLHY_ 0 0 0 REV__ENSG00000180611|ENST00000392452|MB21D2 REV__ENSG00000180611|ENST00000392452|MB21D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.8880615234375 3 470.887494 1409.64065 0.31236 0.00014709 1.0166 0.00047869 1.3289 0.00062577 471.22253963433644 37.372 0.25455 37.372 37.238 37.493 0 35 13 4 0 0 0 0.70701 1 19857 19857 1.4551 0.24029 1 9865600 + 4421 23158 2880 2949 5228 5228 -0.047781783041727977 CAWLMMSRLHY 11 Unmodified _CAWLMMSRLHY_ 0 0 0 REV__ENSG00000180611|ENST00000392452|MB21D2 REV__ENSG00000180611|ENST00000392452|MB21D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 470.887494 1409.64065 0.019306 9.0912E-06 1.1646 0.00054838 1.1839 0.00055747 470.88813633318597 37.836 0.21648 37.565 37.422 37.638 -0.27133 0.096445 9.4149E-05 NaN 1.4551 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4271200 + 4422 23158 2880 2949 -0.047781783041727977 CCAPASPKT 9 Unmodified _CCAPASPKT_ 0 0 0 REV__ENSG00000135960|ENST00000258443|EDAR REV__ENSG00000135960|ENST00000258443|EDAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 877.3915405273438 1 877.390635 876.383359 -0.049197 -4.3165E-05 1.4257 0.0012509 1.3765 0.0012078 877.3922882241612 52.173 0.2015 51.74 51.649 51.851 -0.43367 16 9 2 0 0 0 0.48152 1 28147 28147 8.5933 1.304 1 1500800 + 4423 20121 2881 2950 5229 5229 -0.05977752185856389 CCAPASPKT 9 Unmodified _CCAPASPKT_ 0 0 0 REV__ENSG00000135960|ENST00000258443|EDAR REV__ENSG00000135960|ENST00000258443|EDAR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 877.390635 876.383359 0.32819 0.00028795 -0.88879 -0.00077981 -0.56059 -0.00049186 877.3905847904826 51.6 0.23552 51.6 51.454 51.689 0 -0.069768 -0.0013185 NaN 8.5933 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2041900 + 4424 20121 2881 2950 -0.05977752185856389 CCAPASPKT 9 Unmodified _CCAPASPKT_ 0 0 0 REV__ENSG00000135960|ENST00000258443|EDAR REV__ENSG00000135960|ENST00000258443|EDAR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 877.390635 876.383359 -0.049197 -4.3165E-05 1.4257 0.0012509 1.3765 0.0012078 877.3922882241612 52.173 0.2015 51.74 51.649 51.851 -0.43367 0.069768 0.00071228 NaN 8.5933 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1500800 + 4425 20121 2881 2950 -0.05977752185856389 CCCCFWGGAVA 11 Unmodified _CCCCFWGGAVA_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.1956787109375 2 560.197576 1118.3806 NaN NaN NaN NaN NaN NaN NaN 63.663 1 63.663 63.163 64.163 0 0 0 0 0.94144 1 35511 35511 1.4819 0.68827 1 4426 5541 2882 2951 5230 5230 -0.1738566690667085 CCCCPCCPRL 10 Unmodified _CCCCPCCPRL_ 0 0 0 ENSG00000163959|ENST00000296327|SLC51A ENSG00000163959|ENST00000296327|SLC51A ENSG00000163959|ENST00000296327|SLC51A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.685302734375 2 550.685464 1099.35637 0.70836 0.00039008 -1.5869 -0.00087391 -0.87858 -0.00048382 550.684461417166 49.815 0.33629 49.815 49.695 50.032 0 29 15 2 0 0 0 0.71123 1 27411 27411 1.6526 0.85899 1 5434100 4427 7107 2883 2952 5231 5231 -0.18932966656234385 CCCRWCCCCGE 11 Unmodified _CCCRWCCCCGE_ 0 0 0 nc|ENSG00000011021|P51797-5|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.6659545898438 2 634.666945 1267.31934 NaN NaN NaN NaN NaN NaN NaN 104.71 1 104.66 104.16 105.16 -0.048737 0 0 0 0.9435 1 58136 58136 0 0 1 4428 16018 2884 2953 5232 5232 -0.3036300626429238 CCCSIHPW 8 Unmodified _CCCSIHPW_ 0 0 0 REV__ENST00000432829.6_1_9:379864-382618:+|nuORF REV__ENST00000432829.6_1_9:379864-382618:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 474.6812744140625 2 474.679876 947.345199 NaN NaN NaN NaN NaN NaN NaN 65.923 1 59.748 59.248 60.248 -6.1757 0 0 0 0.97444 1 42834 42834 2.8892 0 1 + 4429 26994 2885 2954 5233 5233 -0.1305796137218067 CCCVPPLL 8 Unmodified _CCCVPPLL_ 0 0 0 ENST00000329608.10_2_1:110473031-110473076:+|nuORF ENST00000329608.10_2_1:110473031-110473076:+|nuORF ENST00000329608.10_2_1:110473031-110473076:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1972961425781 2 424.19737 846.380188 NaN NaN NaN NaN NaN NaN NaN 19.19 1 19.213 18.713 19.713 0.023106 0 0 0 0.97444 1 9663 9663 0.79363 0 1 4430 11847 2886 2955 5234 5234 -0.04914718564236864 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8300170898438 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 102.07 1 102.02 101.52 102.52 -0.045853 0 0 0 1.0061 1 56696 56696 0 0 1 + 4431 17898 2887 2956 5235 5235 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1591186523438 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 7.3221 1 4.8402 4.3402 5.3402 -2.482 0 0 0 1.0061 1 3695 3695 0 0 1 + 4432 17898 2887 2956 5236 5236 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1585693359375 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 8.6092 1 6.1273 5.6273 6.6273 -2.482 0 0 0 1.0061 1 4346 4346 0 0 1 + 4433 17898 2887 2956 5237 5237 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1593627929688 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 9.0268 1 6.5449 6.0449 7.0449 -2.482 0 0 0 1.0061 1 4552 4552 0 0 1 + 4434 17898 2887 2956 5238 5238 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1572265625 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 9.8808 1 7.3988 6.8988 7.8988 -2.482 0 0 0 1.0061 1 4983 4983 0 0 1 + 4435 17898 2887 2956 5239 5239 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1585083007812 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 11.522 1 9.0398 8.5398 9.5398 -2.482 0 0 0 1.0061 1 5801 5801 0 0 1 + 4436 17898 2887 2956 5240 5240 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.1578369140625 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 14.345 1 11.842 11.342 12.342 -2.5029 0 0 0 1.0061 1 7281 7281 0 0 1 + 4437 17898 2887 2956 5241 5241 -0.2807754978982757 CCCWCFCCTN 10 Unmodified _CCCWCFCCTN_ 0 0 0 REV__ENSG00000091844|ENST00000206262|RGS17 REV__ENSG00000091844|ENST00000206262|RGS17 MSMS AL20221201_MKP_PDAC_01 4 593.15869140625 2 593.159279 1184.304 NaN NaN NaN NaN NaN NaN NaN 14.844 1 12.317 11.817 12.817 -2.5273 0 0 0 1.0061 1 7568 7568 0 0 1 + 4438 17898 2887 2956 5242 5242 -0.2807754978982757 CCCYSSPEVSC 11 Unmodified _CCCYSSPEVSC_ 0 0 0 L1MDa_dup787|chr2:111343913-111344229:-|1.2090477969195232|0.3438758665129249|1.81|179.0|13|1|anti-sense L1MDa_dup787|chr2:111343913-111344229:-|1.2090477969195232|0.3438758665129249|1.81|179.0|13|1|anti-sense L1MDa_dup787|chr2:111343913-111344229:-|1.2090477969195232|0.3438758665129249|1.81|179.0|13|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.6903686523438 2 590.69252 1179.37049 NaN NaN NaN NaN NaN NaN NaN 15.588 1 15.594 15.094 16.094 0.0057774 0 0 0 0.94301 1 7775 7775 0.35063 0.35063 1 4439 15951 2888 2957 5243 5243 -0.21202319422559412 CCDASVST 8 Unmodified _CCDASVST_ 0 0 0 REV__ENSG00000112238|ENST00000369215|PRDM13 REV__ENSG00000112238|ENST00000369215|PRDM13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8565979003906 2 393.143846 784.27314 0.45556 0.0001791 -0.35247 -0.00013857 0.10309 4.0528E-05 393.1435458324604 64.862 0.36546 64.377 64.189 64.554 -0.48512 25 16 2 0 0 0 8.7369 1 35381 35381 2.3027 1.5091 1 1053200 + 4440 18798 2889 2958 5244 5244 -0.12762597244898188 CCDPDMCD 8 Unmodified _CCDPDMCD_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3;REV__ENSG00000149256|ENST00000278550|TENM4 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 901.292236328125 1 901.219472 900.212196 -0.021105 -1.902E-05 0.41643 0.0003753 0.39533 0.00035628 901.2211739740595 86.218 0.26571 86.28 86.186 86.452 0.061638 22 16 2 0 0 0 8.7369 1 47763 47763 0 0 1 47171000 + 4441 24352;20987 2890 2959 5245 5245 -0.24190193611002542 CCFCCCTCRF 10 Unmodified _CCFCCCTCRF_ 0 0 0 REV__ENSG00000114698|ENST00000354952|PLSCR4 REV__ENSG00000114698|ENST00000354952|PLSCR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.6834716796875 2 594.682921 1187.35129 NaN NaN NaN NaN NaN NaN NaN 92.895 1 92.437 91.937 92.937 -0.4574 0 0 0 1.0019 1 50769 50769 0.45834 0.10771 1 + 4442 18927 2891 2960 5246 5246 -0.2348927051884857 CCFYLSAY 8 Unmodified _CCFYLSAY_ 0 0 0 REV__nc|ENSG00000182287|P56377-2|AP1S2;REV__nc|ENSG00000152056|Q96PC3-3|AP1S3 REV__nc|ENSG00000182287|P56377-2|AP1S2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7452697753906 2 485.195882 968.377211 -0.13833 -6.7118E-05 1.3684 0.00066393 1.23 0.00059681 485.1965700721382 41.762 0.19936 41.762 41.626 41.825 0 13 9 2 0 0 0 8.7369 1 22585 22585 10.183 4.423 1 1480500 + 4443 29834;21099 2892 2961 5247 5247 -0.10824270417401749 CCGSAKAFHPL 11 Unmodified _CCGSAKAFHPL_ 0 0 0 REV__ENSG00000255855|ENST00000545950|KDM4F REV__ENSG00000255855|ENST00000545950|KDM4F MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.0045166015625 3 378.512533 1132.51577 1.7135 0.00064858 -1.2028 -0.00045527 0.51073 0.00019332 378.5120986723459 37.585 0.31248 33.279 33.115 33.427 -4.306 25 18 2 0 0 0 0.30303 1 22001 22001 3.0723 3.0723 1 12541000 + 4444 24546 2893 2962 5248 5248 -0.04518727449067228 CCHCCFGFN 9 Unmodified _CCHCCFGFN_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1610107421875 2 517.160993 1032.30743 NaN NaN NaN NaN NaN NaN NaN 12.62 1 12.555 12.055 13.055 -0.064889 0 0 0 0.8622 1 6132 6132 0 0 1 + 4445 16800 2894 2963 5249 5249 -0.20742795629280408 CCIYMSQSM 9 Unmodified _CCIYMSQSM_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|320|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|320|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|320|2|anti-sense MSMS AL20221201_MKP_PDAC_01 4 533.1958618164062 2 533.197241 1064.37993 NaN NaN NaN NaN NaN NaN NaN 48.889 1 43.493 42.993 43.993 -5.3961 0 0 0 0.76439 1 30488 30488 7.2892 0.56607 1 4446 15921 2895 2964 5250 5250 -0.14968506346372124 CCKERWHAYK 10 Unmodified _CCKERWHAYK_ 0 0 0 REV__ENST00000424518.5_1_12:54357877-54360106:-|nuORF REV__ENST00000424518.5_1_12:54357877-54360106:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.3096923828125 2 662.307892 1322.60123 NaN NaN NaN NaN NaN NaN NaN 23.004 1 23.004 22.504 23.504 0 0 0 0 1.0019 1 11715 11715 0.45834 0 1 + 4447 26880 2896 2965 5251 5251 -0.047165622633883686 CCLLVLLVVV 10 Unmodified _CCLLVLLVVV_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3264770507812 2 537.326699 1072.63885 0.28265 0.00015188 -3.0682 -0.0016486 -2.7856 -0.0014968 537.3254382451988 74.451 0.20551 74.497 74.411 74.616 0.045967 12 8 2 0 0 0 0.34789 1 41046 41046 24.674 6.5389 1 1527500 + 4448 20888 2897 2966 5252 5252 0.10543135949501448 CCLLVLLVVV 10 Unmodified _CCLLVLLVVV_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8065795898438 2 537.326699 1072.63885 0.28265 0.00015188 -3.0682 -0.0016486 -2.7856 -0.0014968 537.3254382451988 74.451 0.20551 74.497 74.411 74.616 0.045967 12 8 2 0 0 0 0.22327 1 41083 41083 18.135 3.2967 1 1527500 + 4449 20888 2897 2966 5253 5253 0.10543135949501448 CCMCADVCVPM 11 Unmodified _CCMCADVCVPM_ 0 0 0 REV__nc|ENSG00000261701|P00739-2|HPR REV__nc|ENSG00000261701|P00739-2|HPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.20166015625 2 587.698237 1173.38192 0.093703 5.5069E-05 1.5185 0.00089244 1.6122 0.00094751 587.6992637041184 80.35 0.38572 80.35 80.158 80.544 0 84 18 6 0 0 0 0.74157 1 44646 44646 0.35063 0.35063 1 4955100 + 4450 29993 2898 2967 5254 5254 -0.19783536924455802 CCPCCCSSECC 11 Unmodified _CCPCCCSSECC_ 0 0 0 REV__ENSG00000241241|ENST00000440582|KRTAP4-16 REV__ENSG00000241241|ENST00000440582|KRTAP4-16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.6244506835938 2 570.624411 1139.23427 NaN NaN NaN NaN NaN NaN NaN 17.187 1 17.192 16.692 17.692 0.0050564 0 0 0 0.9435 1 8658 8658 0 0 1 + 4451 24446 2899 2968 5255 5255 -0.3297779652073132 CCPGWAPSM 9 Unmodified _CCPGWAPSM_ 0 0 0 nc|ENSG00000167992|Q96DN2-2|VWCE;ENSG00000167992|ENST00000335613|VWCE nc|ENSG00000167992|Q96DN2-2|VWCE nc|ENSG00000167992|Q96DN2-2|VWCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.1793823242188 2 476.179709 950.344865 0.34893 0.00016615 -3.3403 -0.0015906 -2.9914 -0.0014245 476.17940866080824 65.668 0.6469 59.492 59.236 59.883 -6.1757 114 37 4 0 0 0 0.54444 1 42574 42574 4.756 1.8668 1 48227000 4452 7696 2900 2969 5256 5256 -0.1322938109203733 CCPVCEEPTI 10 Unmodified _CCPVCEEPTI_ 0 0 0 ENSG00000150938|ENST00000280527|CRIM1;ENST00000481321.1_1_2:36706686-36726495:+|nuORF ENSG00000150938|ENST00000280527|CRIM1 ENSG00000150938|ENST00000280527|CRIM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2119750976562 3 365.150273 1092.42899 0.27544 0.00010058 1.1089 0.0004049 1.3843 0.00050548 365.48517767094455 37.027 0.16022 37.027 36.916 37.076 0 10 7 2 0 0 0 0.24005 1 19652 19652 0.77653 0.078866 1 706440 4453 6079 2901 2970 5257 5257 -0.11352894785795797 CCPYEIISM 9 Unmodified _CCPYEIISM_ 0 0 0 ENST00000274793.11_1_6:46684781-46690560:-|nuORF ENST00000274793.11_1_6:46684781-46690560:-|nuORF ENST00000274793.11_1_6:46684781-46690560:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8170471191406 3 353.483363 1057.42826 0.24425 8.6338E-05 -1.5709 -0.00055528 -1.3266 -0.00046894 353.4828379223708 52.846 0.30027 52.846 52.657 52.958 0 17 13 2 0 0 0 0.54213 1 29237 29237 4.897 1.9018 1 1589300 4454 11388 2902 2971 5258 5258 -0.09815689434844899 CCQDNGRTLE 10 Unmodified _CCQDNGRTLE_ 0 0 0 ENST00000494860.5_1_11:112064591-112085724:+|nuORF;nc|ENSG00000197580|Q9BYV7-6|BCO2;nc|ENSG00000197580|Q9BYV7-5|BCO2;nc|ENSG00000197580|Q9BYV7-4|BCO2;nc|ENSG00000197580|Q9BYV7-2|BCO2;ENSG00000197580|ENST00000357685|BCO2 ENST00000494860.5_1_11:112064591-112085724:+|nuORF ENST00000494860.5_1_11:112064591-112085724:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1583557128906 3 380.158707 1137.45429 0.055411 2.1065E-05 -0.88328 -0.00033579 -0.82787 -0.00031472 380.1583148493711 92.602 0.16725 92.602 92.482 92.649 0 19 11 2 0 0 0 0.71981 1 51172 51172 0.69767 0.07084 1 325920 4455 9974 2903 2972 5259 5259 -0.10893703938995714 CCRGLRKPRM 10 Unmodified _CCRGLRKPRM_ 0 0 0 REV__nc|ENSG00000173805|P54257-3|HAP1 REV__nc|ENSG00000173805|P54257-3|HAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3212280273438 2 610.320279 1218.62601 0.4933 0.00030107 1.7168 0.0010478 2.2101 0.0013488 610.3212082676465 90.024 0.33905 89.522 89.345 89.684 -0.50171 29 17 2 0 0 0 0.72196 1 49275 49275 0.45834 0.057624 1 527270 + 4456 22749 2904 2973 5260 5260 0.025437943383167294 CCRRHVVY 8 Unmodified _CCRRHVVY_ 0 0 0 ENST00000368667.6_1_6:112041260-112114912:-|nuORF ENST00000368667.6_1_6:112041260-112114912:-|nuORF ENST00000368667.6_1_6:112041260-112114912:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2521362304688 2 518.252388 1034.49022 0.54264 0.00028122 -2.4958 -0.0012934 -1.9531 -0.0010122 518.2508641790482 72.549 0.37289 72.072 71.878 72.251 -0.4761 41 17 3 0 0 0 0.78849 1 39670 39670 9.3474 1.4373 1 1957800 4457 12278 2905 2974 5261 5261 -0.02564157180836446 CCRRHVVY 8 Unmodified _CCRRHVVY_ 0 0 0 ENST00000368667.6_1_6:112041260-112114912:-|nuORF ENST00000368667.6_1_6:112041260-112114912:-|nuORF ENST00000368667.6_1_6:112041260-112114912:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 518.252388 1034.49022 0.45548 0.00023605 -1.2407 -0.00064298 -0.78519 -0.00040693 518.2517839947625 72.029 0.27783 72.068 71.893 72.171 0.039024 -0.0020812 0.00062236 NaN 9.3474 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2342900 4458 12278 2905 2974 -0.02564157180836446 CCSCMCDEDNA 11 Unmodified _CCSCMCDEDNA_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.155029296875 2 597.155444 1192.29634 NaN NaN NaN NaN NaN NaN NaN 12.854 1 12.806 12.306 13.306 -0.048298 0 0 0 0.9435 1 6241 6241 0 0 1 4459 8231 2906 2975 5262 5262 -0.2921203057640014 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7404479980469 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 20.364 1 20.364 19.864 20.864 0 0 0 0 0.97444 1 10241 10241 0.79363 0.79363 1 + 4460 24009 2907 2976 5263 5263 -0.23497889748387024 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.5317687988281 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 22.365 1 22.365 21.865 22.865 0 0 0 0 0.97444 1 11371 11371 0 0 1 + 4461 24009 2907 2976 5264 5264 -0.23497889748387024 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.1155395507812 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 71.026 1 71.026 70.526 71.526 0 0 0 0 0.97444 1 39569 39569 0 0 1 + 4462 24009 2907 2976 5265 5265 -0.23497889748387024 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7784423828125 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 75.462 1 75.462 74.962 75.962 0 0 0 0 0.97444 1 41976 41976 0 0 1 + 4463 24009 2907 2976 5266 5266 -0.23497889748387024 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.115966796875 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 88.233 1 87.729 87.229 88.229 -0.50423 0 0 0 0.97444 1 48258 48258 0 0 1 + 4464 24009 2907 2976 5267 5267 -0.23497889748387024 CCSSECCY 8 Unmodified _CCSSECCY_ 0 0 0 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 REV__ENSG00000198271|ENST00000343246|KRTAP4-5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.1161804199219 2 449.115917 896.217281 NaN NaN NaN NaN NaN NaN NaN 5.3856 1 5.3867 4.8867 5.8867 0.0010915 0 0 0 0.97444 1 2714 2714 0 0 1 + 4465 24009 2907 2976 5268 5268 -0.23497889748387024 CCSWFTSKRS 10 Unmodified _CCSWFTSKRS_ 0 0 0 REV__ENST00000379403.2_1_15:83710550-83710670:-|nuORF REV__ENST00000379403.2_1_15:83710550-83710670:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1947021484375 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 8.3963 1 8.4139 7.9139 8.9139 0.017581 0 0 0 1.0029 1 4181 4181 0.12286 0.028024 1 + 4466 26283 2908 2977 5269 5269 -0.07711932800020804 CCTSFDPCEF 10 Unmodified _CCTSFDPCEF_ 0 0 0 REV__nc|ENSG00000030582|P28799-2|GRN REV__nc|ENSG00000030582|P28799-2|GRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.1967163085938 2 576.195753 1150.37695 0.95047 0.00054766 -0.54472 -0.00031387 0.40575 0.00023379 576.1954687180236 63.093 0.4669 56.917 56.676 57.143 -6.1757 35 24 2 0 0 0 0.66569 1 40673 40673 6.7232 4.2247 1 32036000 + 4467 17145 2909 2978 5270 5270 -0.19222058199557068 CCWHCEPCT 9 Unmodified _CCWHCEPCT_ 0 0 0 nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4 nc|ENSG00000124493|Q14833-3|GRM4 nc|ENSG00000124493|Q14833-3|GRM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.1717529296875 2 541.171558 1080.32856 1.0068 0.00054487 -0.37426 -0.00020254 0.63258 0.00034233 541.1714029661459 55.258 0.49083 49.337 49.113 49.603 -5.9211 101 30 4 0 0 0 0.61256 1 35104 35104 0.6015 0.6015 1 134560000 4468 3791 2910 2979 5271 5271 -0.20838830320440138 CCWPWASF 8 Unmodified _CCWPWASF_ 0 0 0 REV__ENST00000304698.9_1_2:187558820-187558961:+|nuORF REV__ENST00000304698.9_1_2:187558820-187558961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.1962585449219 2 500.196216 998.37788 0.7421 0.00037119 -0.22827 -0.00011418 0.51383 0.00025701 500.1958202403524 73.563 0.18967 73.563 73.524 73.713 0 11 7 2 0 0 0 0.80676 1 41013 41013 2.5775 0 1 281220 + 4469 25359 2911 2980 5272 5272 -0.12137430977679742 CCWSDPCI 8 Unmodified _CCWSDPCI_ 0 0 0 REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.6634826660156 2 463.663892 925.31323 0.25607 0.00011873 -0.94173 -0.00043665 -0.68566 -0.00031792 463.66352534219254 45.159 0.23368 45.159 45.016 45.249 0 16 11 2 0 0 0 0.78849 1 24575 24575 9.3474 0.75416 1 4947500 + 4470 27479 2912 2981 5273 5273 -0.15241373845992712 CCYPQRCS 8 Unmodified _CCYPQRCS_ 0 0 0 REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF REV__ENST00000377988.6_1_9:35829886-35834472:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.1807861328125 2 480.18024 958.345927 NaN NaN NaN NaN NaN NaN NaN 1.479 1 1.4057 0.90572 1.9057 -0.07329 0 0 0 0.97444 1 741 741 0.6015 0.076735 1 + 4471 26256 2913 2982 5274 5274 -0.13491166723122205 CCYVTCRRCER 11 Unmodified _CCYVTCRRCER_ 0 0 0 ENSG00000085741|ENST00000322563|WNT11 ENSG00000085741|ENST00000322563|WNT11 ENSG00000085741|ENST00000322563|WNT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5315856933594 3 464.531493 1390.57265 -0.041092 -1.9089E-05 0.29236 0.00013581 0.25127 0.00011672 464.5316425166035 42.495 0.29662 42.188 42.064 42.36 -0.30682 67 14 6 0 0 0 0.71036 1 22547 22547 1.3296 0 1 170410000 4472 1416 2914 2983 5275 5275 -0.10701371226491574 CDCGDSGS 8 Unmodified _CDCGDSGS_ 0 0 0 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 MSMS AL20221201_MKP_PDAC_01 4 372.1440124511719 2 372.102178 742.189804 NaN NaN NaN NaN NaN NaN NaN 46.793 1 41.712 41.212 42.212 -5.0805 0 0 0 0.97444 1 28968 28968 0.69038 0.69038 1 4473 1066 2915 2984 5276 5276 -0.1916033369275283 CDEDKFRHNEF 11 Unmodified _CDEDKFRHNEF_ 0 0 0 ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.5390930175781 3 480.538464 1438.59356 NaN NaN NaN NaN NaN NaN NaN 62.429 1 61.942 61.442 62.442 -0.48764 0 0 0 0.9428 1 34017 34017 0.50596 0 1 4474 10890 2916 2985 5277 5277 -0.10819043049968968 CDFIQKITK 9 Unmodified _CDFIQKITK_ 0 0 0 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8660888671875 3 365.867082 1094.57942 NaN NaN NaN NaN NaN NaN NaN 2.9979 1 2.9856 2.4856 3.4856 -0.012334 0 0 0 0.85798 1 1521 1521 0.23584 0 1 4475 2051 2917 2986 5278 5278 0.035909562596543765 CDFLLMMD 8 Unmodified _CDFLLMMD_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2036743164062 2 494.20285 986.391146 0.93317 0.00046118 1.0831 0.00053529 2.0163 0.00099646 494.2034102134127 59.778 0.49165 53.663 53.394 53.886 -6.1147 57 27 3 0 0 0 0.78849 1 38304 38304 9.3474 9.3474 1 77459000 + 4476 20707 2918 2987 5279 5279 -0.1025936098060356 CDFSSTNQY 9 Unmodified _CDFSSTNQY_ 0 0 0 REV__nc|ENSG00000165494|O94913|PCF11 REV__nc|ENSG00000165494|O94913|PCF11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1064.3935546875 1 1064.39895 1063.39167 1.3927 0.0014824 1.346 0.0014327 2.7387 0.0029151 1064.4008246724588 109.21 0.53105 103.04 102.83 103.36 -6.1757 168 107 3 0 0 0 0.21564 1 72827 72827 3.9444 0.3479 1 2757000 + 4477 22014 2919 2988 5280 5280 -0.13748526735548694 CDGCGQAWGAT 11 Unmodified _CDGCGQAWGAT_ 0 0 0 REV__ENSG00000167625|ENST00000301215|ZNF526 REV__ENSG00000167625|ENST00000301215|ZNF526 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8011169433594 3 356.800631 1067.38006 NaN NaN NaN NaN NaN NaN NaN 86.889 1 86.947 86.447 87.447 0.05822 0 0 0 0.94307 1 48283 48283 0.08335 0 1 + 4478 22229 2920 2989 5281 5281 -0.1509304703054113 CDGDNDCEDDS 11 Unmodified _CDGDNDCEDDS_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MSMS AL20221201_MKP_PDAC_01 4 594.158203125 2 594.158607 1186.30266 NaN NaN NaN NaN NaN NaN NaN 18.614 1 15.993 15.493 16.493 -2.6215 0 0 0 0.9435 1 9816 9816 0 0 1 4479 4619 2921 2990 5282 5282 -0.283037745480442 CDHCFVHG 8 Unmodified _CDHCFVHG_ 0 0 0 REV__ENSG00000189051|ENST00000399398|RNF222 REV__ENSG00000189051|ENST00000399398|RNF222 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.1720581054688 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 21.617 1 21.645 21.145 22.145 0.028357 0 0 0 0.97444 1 10976 10976 0.79363 0.79363 1 + 4480 23756 2922 2991 5283 5283 -0.1295207615991103 CDHCFVHG 8 Unmodified _CDHCFVHG_ 0 0 0 REV__ENSG00000189051|ENST00000399398|RNF222 REV__ENSG00000189051|ENST00000399398|RNF222 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.1722717285156 2 459.173272 916.331992 NaN NaN NaN NaN NaN NaN NaN 18.031 1 18.038 17.538 18.538 0.0060463 0 0 0 0.97444 1 9121 9121 0.79363 0.79363 1 + 4481 23756 2922 2991 5284 5284 -0.1295207615991103 CDLDDDCGDRS 11 Unmodified _CDLDDDCGDRS_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2080078125 2 607.208434 1212.40232 NaN NaN NaN NaN NaN NaN NaN 7.2014 1 7.1167 6.6167 7.6167 -0.08463 0 0 0 0.94307 1 3542 3542 0.30703 0 1 4482 3705 2923 2992 5285 5285 -0.19538912143434572 CDLWLGYCL 9 Unmodified _CDLWLGYCL_ 0 0 0 REV__ENST00000324460.6_1_9:128003401-128003485:-|nuORF REV__ENST00000324460.6_1_9:128003401-128003485:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.7191772460938 2 543.243363 1084.47217 1.3218 0.00071807 1.1827 0.00064251 2.5046 0.0013606 543.2445736746489 64.252 0.51309 58.076 57.802 58.315 -6.1757 33 26 2 0 0 0 0.082914 1 41606 41606 40.449 12.275 1 8791300 + 4483 25535 2924 2993 5286 5286 -0.06668336946199815 CDSKRTHVLC 10 Unmodified _CDSKRTHVLC_ 0 0 0 ENST00000377658.8_1_1:6655614-6659217:-|nuORF ENST00000377658.8_1_1:6655614-6659217:-|nuORF ENST00000377658.8_1_1:6655614-6659217:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.279052734375 2 581.2788 1160.54305 1.188 0.00069056 -0.86816 -0.00050465 0.31984 0.00018592 581.2784092493691 21.34 0.41497 18.605 18.43 18.844 -2.7348 105 36 4 0 0 0 0.5905 1 11361 11361 11.64 4.3511 1 40258000 4484 12524 2925 2994 5287 5287 -0.03080243908675584 CDSKRTHVLC 10 Unmodified _CDSKRTHVLC_ 0 0 0 ENST00000377658.8_1_1:6655614-6659217:-|nuORF ENST00000377658.8_1_1:6655614-6659217:-|nuORF ENST00000377658.8_1_1:6655614-6659217:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8555908203125 3 387.854959 1160.54305 1.9364 0.00075104 0.51421 0.00019944 2.4506 0.00095048 387.85511476797734 47.742 0.57547 42.508 42.165 42.74 -5.2339 79 34 4 0 0 0 0.65773 1 29518 29518 7.0371 3.1912 1 18268000 4485 12524 2925 2994 5288 5288 -0.03080243908675584 CDSLAKIPK 9 Unmodified _CDSLAKIPK_ 0 0 0 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.54052734375 1 974.533929 973.526652 -0.01519 -1.4803E-05 -2.7068 -0.0026379 -2.722 -0.0026527 974.5307594092851 69.189 0.31906 68.708 68.554 68.873 -0.48071 25 13 3 0 0 0 0.61381 1 37851 37851 0.52476 0.52476 1 952990 4486 5818 2926 2995 5289 5289 0.03882998196877452 CECTICPDCF 10 Unmodified _CECTICPDCF_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31;ENST00000491351.5_1_14:24616897-24626527:+|nuORF;nc|ENSG00000092098|Q96EP0-2|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.1934814453125 2 567.192156 1132.36976 1.2196 0.00069177 0.8149 0.00046221 2.0345 0.001154 567.1928493656657 41.601 0.40282 36.994 36.817 37.22 -4.6079 79 26 4 0 0 0 0.66569 1 25058 25058 6.7232 1.9672 1 35090000 4487 1605 2927 2996 5290 5290 -0.19113114071660675 CEDCMSKF 8 Unmodified _CEDCMSKF_ 0 0 0 ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ENSG00000163867|ENST00000357182|ZMYM6 ENST00000493328.5_1_1:35455862-35480681:-|nuORF ENST00000493328.5_1_1:35455862-35480681:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.67529296875 2 481.674456 961.33436 0.371 0.0001787 1.4135 0.00068084 1.7845 0.00085954 481.67509332580323 40.077 0.48199 35.548 35.275 35.757 -4.5294 72 41 2 0 0 0 0.74163 1 23996 23996 13.508 7.7475 1 69340000 4488 7085 2928 2997 5291 5291 -0.14785408537113653 CEDVTLTKYQ 10 Unmodified _CEDVTLTKYQ_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2838745117188 2 600.284271 1198.55399 0.52738 0.00031658 -0.90448 -0.00054295 -0.3771 -0.00022637 600.2836965196044 85.073 0.42593 84.571 84.365 84.791 -0.5015 56 21 3 0 0 0 0.62068 1 46585 46585 10.074 0.72649 1 2837600 4489 9384 2929 2998 5292 5292 -0.037345630533991425 CEDVTLTKYQ 10 Unmodified _CEDVTLTKYQ_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2848510742188 2 600.284271 1198.55399 0.50855 0.00030527 0.72151 0.00043311 1.2301 0.00073839 600.2846114906481 86.835 0.95689 86.332 85.699 86.656 -0.50318 85 39 3 0 0 0 0.46514 1 47527 47527 18.146 9.9908 1 2808000 4490 9384 2929 2998 5293 5293 -0.037345630533991425 CEDVTLTKYQ 10 Unmodified _CEDVTLTKYQ_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7874755859375 2 600.284271 1198.55399 0.44749 0.00026862 1.1451 0.0006874 1.5926 0.00095602 600.284541857488 92.019 0.53569 85.843 85.631 86.166 -6.1757 45 31 2 0 0 0 0.52888 1 60933 60933 14.838 0.25658 1 12191000 4491 9384 2929 2998 5294 5294 -0.037345630533991425 CEECCCCCCC 10 Unmodified _CEECCCCCCC_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS AL20221201_MKP_PDAC_01 4 367.5581359863281 3 367.730352 1100.16923 NaN NaN NaN NaN NaN NaN NaN 54.586 1 48.72 48.22 49.22 -5.8653 0 0 0 1.0061 1 34645 34645 0 0 1 + 4492 22444 2930 2999 5295 5295 -0.37685114318264823 CEECCCCCCC 10 Unmodified _CEECCCCCCC_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS AL20221201_MKP_PDAC_01 4 367.7319030761719 3 367.730352 1100.16923 NaN NaN NaN NaN NaN NaN NaN 54.687 1 48.822 48.322 49.322 -5.8653 0 0 0 1.0061 1 34717 34717 0 0 1 + 4493 22444 2930 2999 5296 5296 -0.37685114318264823 CEIESKHQAL 10 Unmodified _CEIESKHQAL_ 0 0 0 REV__nc|ENSG00000168959|P41594-3|GRM5 REV__nc|ENSG00000168959|P41594-3|GRM5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2163391113281 3 386.525496 1156.55466 0.6622 0.00025596 1.113 0.0004302 1.7752 0.00068615 386.85977181745255 50.703 0.17752 50.649 50.57 50.747 -0.053871 10 8 2 0 0 0 0.23745 1 27468 27468 1.4551 1.0884 1 683120 + 4494 22364 2931 3000 5297 5297 -0.01735723613683149 CEKESNMLIYL 11 Unmodified _CEKESNMLIYL_ 0 0 0 REV__ENST00000417748.1_2_2:201994152-201994242:+|nuORF REV__ENST00000417748.1_2_2:201994152-201994242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.822021484375 2 671.822706 1341.63086 -0.43172 -0.00029004 -0.78867 -0.00052984 -1.2204 -0.00081989 671.8225091193472 56.6 0.56187 56.115 55.981 56.543 -0.48554 104 36 4 0 0 0 0.58219 1 30816 30816 12.241 1.4167 1 24741000 + 4495 26792 2932 3001 5298 5298 -0.0262908782856357 CEKESNMLIYL 11 Unmodified _CEKESNMLIYL_ 0 0 0 REV__ENST00000417748.1_2_2:201994152-201994242:+|nuORF REV__ENST00000417748.1_2_2:201994152-201994242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.3248291015625 2 671.822706 1341.63086 0.090093 6.0527E-05 -0.80787 -0.00054275 -0.71778 -0.00048222 671.8223219656439 56.368 0.55523 56.299 55.942 56.497 -0.068741 64 28 4 0 0 0 0.65846 1 30533 30533 8.1555 0.8663 1 11564000 + 4496 26792 2932 3001 5299 5299 -0.0262908782856357 CENTEAHQKKA 11 Unmodified _CENTEAHQKKA_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2183837890625 3 420.199671 1257.57718 -0.52226 -0.00021945 1.0489 0.00044074 0.52661 0.00022128 420.20023167787224 19.49 0.17938 19.49 19.387 19.566 0 34 21 2 0 0 0 0.306 1 9713 9713 0.45452 0.1855 1 1472100 4497 3369 2933 3002 5300 5300 -0.041301242160898255 CEPCFWDGEPV 11 Unmodified _CEPCFWDGEPV_ 0 0 0 REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.504150390625 3 427.835341 1280.4842 0.42271 0.00018085 -0.34896 -0.0001493 0.073749 3.1552E-05 427.83505627283716 85.492 1.2779 79.316 78.532 79.81 -6.1757 153 76 3 0 0 0 0.73115 1 56480 56480 0.45452 0 1 36145000 + 4498 24031 2934 3003 5301 5301 -0.14482764993704222 CEQPGHPAHL 10 Unmodified _CEQPGHPAHL_ 0 0 0 ENST00000336517.8_2_7:76058935-76062799:+|nuORF ENST00000336517.8_2_7:76058935-76062799:+|nuORF ENST00000336517.8_2_7:76058935-76062799:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.504150390625 3 363.502914 1087.48691 1.8762 0.00068199 1.0881 0.00039552 2.9642 0.0010775 363.8375939581239 35.77 0.33149 31.577 31.409 31.741 -4.1928 34 20 2 0 0 0 0.68719 1 20786 20786 2.086 0.34373 1 9569900 4499 11912 2935 3004 5302 5302 -0.05333128753841265 CERDDCSL 8 Unmodified _CERDDCSL_ 0 0 0 ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD ENST00000460627.5_1_3:184104458-184107207:+|nuORF ENST00000460627.5_1_3:184104458-184107207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.6770629882812 2 470.678585 939.342616 -0.29236 -0.00013761 -1.6279 -0.00076624 -1.9203 -0.00090384 470.67763177851924 34.655 0.23298 34.655 34.56 34.793 0 21 11 2 0 0 0 0.80143 1 18284 18284 5.7604 0 1 2158800 4500 1561 2936 3005 5303 5303 -0.12948138296155776 CESCLYSKEV 10 Unmodified _CESCLYSKEV_ 0 0 0 REV__ENSG00000256087|ENST00000221315|ZNF432 REV__ENSG00000256087|ENST00000221315|ZNF432 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.1011962890625 2 580.75175 1159.48895 NaN NaN NaN NaN NaN NaN NaN 39.566 1 39.577 39.077 40.077 0.011452 0 0 0 0.96443 1 21077 21077 4.5289 0.65253 1 + 4501 24550 2937 3006 5304 5304 -0.08441880850909911 CESIALDRFRS 11 Unmodified _CESIALDRFRS_ 0 0 0 REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF REV__ENST00000593003.5_1_19:9646979-9648992:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8852233886719 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 75.944 1 75.992 75.492 76.492 0.047943 0 0 0 0.94293 1 41894 41894 0.40827 0 1 + 4502 29187 2938 3007 5305 5305 -0.006769608023205365 CESLCPVELW 10 Unmodified _CESLCPVELW_ 0 0 0 REV__ENST00000379540.7_1_9:33301378-33303243:+|nuORF REV__ENST00000379540.7_1_9:33301378-33303243:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7650756835938 2 589.76466 1177.51477 1.3206 0.00077883 1.815 0.0010704 3.1356 0.0018493 589.7650426925005 58.965 0.34564 52.89 52.719 53.065 -6.0745 38 18 3 0 0 0 0.42068 1 37879 37879 20.454 1.1966 1 31665000 + 4503 26287 2939 3008 5306 5306 -0.06688986608628511 CESSAYYYIL 10 Unmodified _CESSAYYYIL_ 0 0 0 REV__ENSG00000181104|ENST00000319211|F2R REV__ENSG00000181104|ENST00000319211|F2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2691650390625 2 606.26809 1210.52163 -0.10965 -6.6479E-05 1.6845 0.0010213 1.5748 0.00095478 606.2690355411506 78.337 0.38818 78.337 78.101 78.489 0 37 17 3 0 0 0 0.67413 1 43507 43507 10.074 4.8433 1 788630 + 4504 23191 2940 3009 5307 5307 -0.07521350456408982 CEYFPIAGKL 10 Unmodified _CEYFPIAGKL_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7914428710938 2 570.791535 1139.56852 0.48321 0.00027581 1.3507 0.00077096 1.8339 0.0010468 570.7925576013533 50.128 0.22891 50.128 50.053 50.282 0 18 10 3 0 0 0 0.52888 1 27627 27627 14.838 2.3067 1 2835300 + 4505 24011 2941 3010 5308 5308 0.004315538854143597 CEYFPIAGKL 10 Unmodified _CEYFPIAGKL_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 570.791535 1139.56852 0.48321 0.00027581 1.3507 0.00077096 1.8339 0.0010468 570.7925576013533 50.128 0.22891 50.128 50.053 50.282 0 0.18205 0.00034823 NaN 14.838 18 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2835300 + 4506 24011 2941 3010 0.004315538854143597 CEYFPIAGKL 10 Unmodified _CEYFPIAGKL_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.791535 1139.56852 1.0918 0.00062317 -1.3246 -0.00075605 -0.2328 -0.00013288 571.2897162810422 49.813 0.26202 49.764 49.645 49.907 -0.048824 -0.18205 -0.0027058 NaN 14.838 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1696400 + 4507 24011 2941 3010 0.004315538854143597 CFAEAERW 8 Unmodified _CFAEAERW_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.220458984375 2 506.221277 1010.428 0.42803 0.00021668 0.22296 0.00011287 0.651 0.00032955 506.2211044229984 76.888 0.55359 76.888 76.566 77.12 0 59 33 4 0 0 0 0.79982 1 42741 42741 6.7232 6.7232 1 4315000 + 4508 21164 2942 3011 5309 5309 -0.07679605048178928 CFAEAERW 8 Unmodified _CFAEAERW_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2215270996094 2 506.221277 1010.428 -0.8993 -0.00045524 1.0064 0.00050948 0.10714 5.4235E-05 506.2221342508303 77.366 0.63503 76.884 76.58 77.215 -0.4826 123 29 7 0 0 0 0.79982 1 42341 42341 6.7232 3.8339 1 11515000 + 4509 21164 2942 3011 5310 5310 -0.07679605048178928 CFAEAERW 8 Unmodified _CFAEAERW_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2228393554688 2 506.221277 1010.428 0.50504 0.00025566 0.80838 0.00040922 1.3134 0.00066488 506.2217631044434 84.344 0.63419 78.168 77.93 78.564 -6.1757 97 36 4 0 0 0 0.77186 1 55534 55534 10.824 2.9138 1 42989000 + 4510 21164 2942 3011 5311 5311 -0.07679605048178928 CFAEAERW 8 Unmodified _CFAEAERW_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.221277 1010.428 0.42803 0.00021668 0.22296 0.00011287 0.651 0.00032955 506.2211044229984 76.888 0.55359 76.888 76.566 77.12 0 0.0063364 -0.00049422 NaN 6.7232 59 33 4 NaN NaN NaN NaN 0 NaN NaN 0 4315000 + 4511 21164 2942 3011 -0.07679605048178928 CFAEAERW 8 Unmodified _CFAEAERW_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.221277 1010.428 0.26394 0.00013361 2.3877 0.0012087 2.6517 0.0013423 506.22231139101916 76.824 0.1605 76.874 76.75 76.91 0.05011 -0.0077594 0.0016975 NaN 6.7232 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 823790 + 4512 21164 2942 3011 -0.07679605048178928 CFCFSCIFKI 10 Unmodified _CFCFSCIFKI_ 0 0 0 ENST00000529408.1_1_12:85431954-85441296:+|nuORF ENST00000529408.1_1_12:85431954-85441296:+|nuORF ENST00000529408.1_1_12:85431954-85441296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.26953125 2 605.776516 1209.53848 -0.14054 -8.5133E-05 1.1084 0.00067143 0.96784 0.0005863 605.7787231952973 78.574 0.26588 78.574 78.432 78.698 0 22 12 2 0 0 0 0.71123 1 43618 43618 1.6526 0 1 392660 4513 14871 2943 3012 5312 5312 -0.05790844375792403 CFCHRFNHF 9 Unmodified _CFCHRFNHF_ 0 0 0 REV__nc|ENSG00000160191|O76083-10|PDE9A REV__nc|ENSG00000160191|O76083-10|PDE9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.1745910644531 3 404.172622 1209.49604 NaN NaN NaN NaN NaN NaN NaN 45.819 1 45.791 45.291 46.291 -0.028011 0 0 0 0.73776 1 24632 24632 8.1555 3.2585 1 + 4514 21519 2944 3013 5313 5313 -0.10033058669182537 CFDCSYSL 8 Unmodified _CFDCSYSL_ 0 0 0 REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF REV__ENST00000497010.1_1_1:45435697-45452248:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.1746520996094 2 469.175146 936.33574 NaN NaN NaN NaN NaN NaN NaN 21.91 1 19.176 18.676 19.676 -2.7348 0 0 0 0.97348 1 11764 11764 5.7604 2.8712 1 + 4515 27829 2945 3014 5314 5314 -0.13497451176726827 CFDVKDVQM 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))FDVKDVQM_ C(1)FDVKDVQM C(90)FDVKDVQM 0 1 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MSMS AL20221201_MKP_PDAC_01 4 571.2551879882812 2 571.254459 1140.49437 NaN NaN NaN NaN NaN NaN NaN 55.605 1 49.684 49.184 50.184 -5.9211 0 0 0 0.011453 1 35411 35411 90.135 51.984 1 4516 2317 2946 3015 5315 5315 227 -0.0702615726845579 CFEGVRLQDEL 11 Unmodified _CFEGVRLQDEL_ 0 0 0 REV__nc|ENSG00000130985|P22314-2|UBA1 REV__nc|ENSG00000130985|P22314-2|UBA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8796691894531 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 16.949 1 16.95 16.45 17.45 0.0010548 0 0 0 0.94287 1 8392 8392 0.45452 0.1855 1 + 4517 19760 2947 3016 5316 5316 -0.02351782896471377 CFFDFLVV 8 Unmodified _CFFDFLVV_ 0 0 0 REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2425842285156 2 495.243689 988.472826 0.19012 9.4157E-05 -0.5383 -0.00026659 -0.34818 -0.00017243 495.24361027874295 78.352 0.297 78.352 78.172 78.469 0 28 13 3 0 0 0 0.77907 2 43584 43490;43584 10.183 1.5901 1 755550 + 4518 28075 2948 3017 5317;5318 5318 -0.02187174234848044 CFFDFLVV 8 Unmodified _CFFDFLVV_ 0 0 0 REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2439270019531 2 495.243689 988.472826 0.27653 0.00013695 -1.664 -0.00082408 -1.3875 -0.00068713 495.2432182278892 78.83 0.27273 78.344 78.189 78.461 -0.48596 16 10 2 0 0 0 0.77907 1 43182 43182 10.183 0 1 955370 + 4519 28075 2948 3017 5319 5319 -0.02187174234848044 CFFDFLVV 8 Unmodified _CFFDFLVV_ 0 0 0 REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 495.243689 988.472826 0.19012 9.4157E-05 -0.5383 -0.00026659 -0.34818 -0.00017243 495.24361027874295 78.352 0.297 78.352 78.172 78.469 0 0.0040849 0.00047892 NaN 10.183 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 755550 + 4520 28075 2948 3017 -0.02187174234848044 CFFDFLVV 8 Unmodified _CFFDFLVV_ 0 0 0 REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF REV__ENST00000505788.5_1_4:77957966-77961048:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 495.243689 988.472826 0.27653 0.00013695 -1.664 -0.00082408 -1.3875 -0.00068713 495.2432182278892 78.83 0.27273 78.344 78.189 78.461 -0.48596 -0.0040849 -0.00063606 NaN 10.183 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 955370 + 4521 28075 2948 3017 -0.02187174234848044 CFGLAMFYLL 10 Unmodified _CFGLAMFYLL_ 0 0 0 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2933959960938 2 589.292856 1176.57116 -0.25808 -0.00015208 -3.5967 -0.0021195 -3.8547 -0.0022716 589.2903236624579 71.437 0.24948 71.437 71.324 71.574 0 25 11 3 0 0 0 0.65502 1 39764 39764 7.9102 0 1 990430 4522 2845 2949 3018 5320 5320 -0.01006313981315543 CFGLAMFYLL 10 Unmodified _CFGLAMFYLL_ 0 0 0 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2919311523438 2 589.292856 1176.57116 NaN NaN NaN NaN NaN NaN NaN 71.872 1 71.396 70.896 71.896 -0.47609 0 0 0 0.6668 1 39333 39333 18.135 0 1 4523 2845 2949 3018 5321 5321 -0.01006313981315543 CFHQRLGRF 9 Unmodified _CFHQRLGRF_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5361328125 3 388.534549 1162.58182 NaN NaN NaN NaN NaN NaN NaN 17.853 1 17.867 17.367 18.367 0.013865 0 0 0 0.84369 1 8909 8909 1.1933 0.12188 1 + 4524 22822;29793 2950 3019 5322 5322 0.007028495080021457 CFHSCDGNPHT 11 Unmodified _CFHSCDGNPHT_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.4869689941406 3 406.486935 1216.43898 0.72419 0.00029437 -1.3595 -0.00055264 -0.63536 -0.00025826 406.48642762454733 53.309 0.32664 47.505 47.301 47.628 -5.8042 36 20 2 0 0 0 0.72952 1 33582 33582 0.50596 0 1 37920000 + 4525 17692 2951 3020 5323 5323 -0.16058570736208821 CFIGRESVSF 10 Unmodified _CFIGRESVSF_ 0 0 0 REV__ENSG00000188784|ENST00000375116|PLA2G2E REV__ENSG00000188784|ENST00000375116|PLA2G2E MSMS AL20221201_MKP_PDAC_01 4 382.1857299804688 3 382.186703 1143.53828 NaN NaN NaN NaN NaN NaN NaN 19.796 1 17.139 16.639 17.639 -2.6564 0 0 0 0.9731 1 10512 10512 3.5871 0.85186 1 + 4526 23729 2952 3021 5324 5324 -0.02774804779801343 CFKRHLIF 8 Unmodified _CFKRHLIF_ 0 0 0 ENST00000585421.5_1_17:76850481-76850583:-|nuORF ENST00000585421.5_1_17:76850481-76850583:-|nuORF ENST00000585421.5_1_17:76850481-76850583:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.298828125 2 532.297122 1062.57969 NaN NaN NaN NaN NaN NaN NaN 94.931 1 94.563 94.063 95.063 -0.36814 0 0 0 0.97444 1 51857 51857 2.8892 2.0956 1 4527 15607 2953 3022 5325 5325 0.050904207701933046 CFLFPFIFFF 10 Unmodified _CFLFPFIFFF_ 0 0 0 REV__ENST00000330943.8_1_16:50707058-50707262:-|nuORF REV__ENST00000330943.8_1_16:50707058-50707262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.22509765625 3 443.224318 1326.65112 1.0029 0.00044452 -0.11196 -4.9624E-05 0.89095 0.00039489 443.22410454921584 52.692 0.24211 52.63 52.463 52.705 -0.06197 23 11 3 0 0 0 0.57332 1 28536 28536 10.8 0 1 4255800 + 4528 25599 2954 3023 5326 5326 0.0008649568417240516 CFNLFETGF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))FNLFETGF_ C(1)FNLFETGF C(57)FNLFETGF 0 1 0 ENST00000452157.5_1_5:56218957-56234137:-|nuORF;nc|ENSG00000155545|Q7Z3K6-4|MIER3;nc|ENSG00000155545|Q7Z3K6-3|MIER3;ENSG00000155545|ENST00000381199|MIER3;nc|ENSG00000155545|Q7Z3K6-2|MIER3 ENST00000452157.5_1_5:56218957-56234137:-|nuORF ENST00000452157.5_1_5:56218957-56234137:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2520751953125 2 567.749867 1133.48518 1.3425 0.00076222 0.14382 8.1655E-05 1.4863 0.00084387 567.7500437966302 100.25 0.12685 94.076 94.014 94.141 -6.1757 16 7 3 0 0 0 0.026094 1 66994 66994 57.471 41.624 1 28456000 4529 6395 2955 3024 5327 5327 634 -0.07622182562454327 CFRDMQKES 9 Unmodified _CFRDMQKES_ 0 0 0 ENSG00000158286|ENST00000377939|RNF207 ENSG00000158286|ENST00000377939|RNF207 ENSG00000158286|ENST00000377939|RNF207 MSMS AL20221201_MKP_PDAC_01 4 381.835693359375 3 381.835564 1142.48486 NaN NaN NaN NaN NaN NaN NaN 16.046 1 13.489 12.989 13.989 -2.557 0 0 0 0.84737 1 8284 8284 0.96228 0 1 4530 6575 2956 3025 5328 5328 -0.08067925553950772 CFRLFNYL 8 Unmodified _CFRLFNYL_ 0 0 0 REV__ENSG00000158411|ENST00000289359|MITD1 REV__ENSG00000158411|ENST00000289359|MITD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.273681640625 2 538.273312 1074.53207 1.3747 0.00073995 -0.47594 -0.00025619 0.89872 0.00048376 538.2731277223384 92.179 0.25799 92.209 92.078 92.336 0.030197 14 9 2 0 0 0 0.78031 1 51293 51293 13.508 4.7625 1 2613300 + 4531 21428 2957 3026 5329 5329 -0.0022127822066977387 CFSDRSPLF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))FSDRSPLF_ C(1)FSDRSPLF C(48)FSDRSPLF 0 1 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.762451171875 2 564.760766 1127.50698 1.2943 0.00073099 -0.40485 -0.00022864 0.88948 0.00050235 564.7605607332846 60.932 0.34657 54.785 54.612 54.959 -6.1478 29 18 2 0 0 0 0.044296 1 39204 39204 47.594 25.848 1 22685000 4532 2112 2958 3027 5330 5330 210 -0.0516737781390475 CFVANVPTNFL 11 Unmodified _CFVANVPTNFL_ 0 0 0 REV__nc|ENSG00000152939|Q8N4S9-2|MARVELD2 REV__nc|ENSG00000152939|Q8N4S9-2|MARVELD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8059692382812 2 612.807716 1223.60088 1.1612 0.00071161 -2.8563 -0.0017503 -1.695 -0.0010387 612.8063778319829 96.362 0.23305 90.186 90.056 90.289 -6.1757 21 13 2 0 0 0 0.42108 1 63835 63835 20.415 1.1575 1 10846000 + 4533 21141 2959 3028 5331 5331 -0.001976587115905204 CFVEELDRF 9 Unmodified _CFVEELDRF_ 0 0 0 ENST00000497170.5_1_13:101795259-101997694:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.5158996582031 3 386.514708 1156.5223 NaN NaN NaN NaN NaN NaN NaN 17.409 1 14.823 14.323 15.323 -2.5866 0 0 0 0.82396 1 9100 9100 2.7352 0 1 4534 2045 2960 3029 5332 5332 -0.04970511016676937 CFVVNEIKP 9 Unmodified _CFVVNEIKP_ 0 0 0 REV__ENSG00000197275|ENST00000336148|RAD54B REV__ENSG00000197275|ENST00000336148|RAD54B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1893310546875 3 350.188044 1047.5423 NaN NaN NaN NaN NaN NaN NaN 72.945 1 72.945 72.445 73.445 0 0 0 0 0.83812 1 40613 40613 2.9952 0.90923 1 + 4535 23913 2961 3030 5333 5333 0.02043284713909088 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795471191406 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 15.401 1 15.401 14.901 15.901 0 0 0 0 0.86004 1 7414 7414 0.26902 0.1097 1 4536 11802 2962 3031 5334 5334 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795471191406 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 19.189 1 19.189 18.689 19.689 0 0 0 0 0.86004 1 9582 9582 0.26902 0.1097 1 4537 11802 2962 3031 5335 5335 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8793640136719 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 20.042 1 20.042 19.542 20.542 0 0 0 0 0.86004 1 10065 10065 0.26902 0.033176 1 4538 11802 2962 3031 5336 5336 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2223205566406 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 21.39 1 21.39 20.89 21.89 0 0 0 0 0.86004 1 10820 10820 0.26902 0.1097 1 4539 11802 2962 3031 5337 5337 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796081542969 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 72.389 1 72.389 71.889 72.889 0 0 0 0 0.86004 1 40308 40308 0.26902 0.1097 1 4540 11802 2962 3031 5338 5338 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8792114257812 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 79.215 1 79.215 78.715 79.715 0 0 0 0 0.86004 1 44005 44005 0.26902 0.1097 1 4541 11802 2962 3031 5339 5339 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8801574707031 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 85.944 1 85.944 85.444 86.444 0 0 0 0 0.85261 1 47615 47615 1.1933 0.41681 1 4542 11802 2962 3031 5340 5340 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789978027344 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 90.399 1 90.399 89.899 90.899 0 0 0 0 0.86004 1 50013 50013 0.26902 0.062163 1 4543 11802 2962 3031 5341 5341 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8794250488281 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 3.1116 1 3.0395 2.5395 3.5395 -0.072029 0 0 0 0.86004 1 1531 1531 0.26902 0.1097 1 4544 11802 2962 3031 5342 5342 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8798217773438 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 9.7508 1 9.6611 9.1611 10.161 -0.08967 0 0 0 0.86004 1 4766 4766 0.26902 0.033176 1 4545 11802 2962 3031 5343 5343 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8798828125 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 32.021 1 31.892 31.392 32.392 -0.12915 0 0 0 0.86004 1 16663 16663 0.26902 0.062163 1 4546 11802 2962 3031 5344 5344 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8800964355469 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 8.7672 1 8.7848 8.2848 9.2848 0.017581 0 0 0 0.86004 1 4359 4359 0.26902 0.1097 1 4547 11802 2962 3031 5345 5345 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8795166015625 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 10.95 1 10.966 10.466 11.466 0.015327 0 0 0 0.86004 1 5407 5407 0.26902 0.1097 1 4548 11802 2962 3031 5346 5346 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8791198730469 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 15.53 1 15.536 15.036 16.036 0.0057774 0 0 0 0.86004 1 7743 7743 0.26902 0.1097 1 4549 11802 2962 3031 5347 5347 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8797607421875 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 16.511 1 16.516 16.016 17.016 0.0050564 0 0 0 0.86004 1 8283 8283 0.26902 0.1097 1 4550 11802 2962 3031 5348 5348 -0.021346576300402376 CFWFFFWLL 9 Unmodified _CFWFFFWLL_ 0 0 0 ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF ENST00000324545.8_2_X:41093181-41093415:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 436.8800048828125 3 436.880663 1307.62016 NaN NaN NaN NaN NaN NaN NaN 5.1992 1 2.7172 2.2172 3.2172 -2.482 0 0 0 0.86004 1 2640 2640 0.26902 0.1097 1 4551 11802 2962 3031 5349 5349 -0.021346576300402376 CFYPDEDDF 9 Unmodified _CFYPDEDDF_ 0 0 0 ENSG00000134323|ENST00000281043|MYCN ENSG00000134323|ENST00000281043|MYCN ENSG00000134323|ENST00000281043|MYCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7036743164062 2 575.705322 1149.39609 NaN NaN NaN NaN NaN NaN NaN 8.9565 1 8.8649 8.3649 9.3649 -0.09156 0 0 0 0.85737 1 4387 4387 0.6015 0.076735 1 4552 4593 2963 3032 5350 5350 -0.1726306231264516 CGATWQAPLMD 11 Unmodified _CGATWQAPLMD_ 0 0 0 REV__ENSG00000168612|ENST00000372523|ZSWIM1 REV__ENSG00000168612|ENST00000372523|ZSWIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1771850585938 3 398.175698 1191.50526 0.085391 3.4E-05 0.90339 0.00035971 0.98878 0.00039371 398.5103101033753 45.715 0.19849 45.715 45.605 45.803 0 13 9 2 0 0 0 0.66428 1 24947 24947 3.8459 0.52627 1 2676600 + 4553 22328 2964 3033 5351 5351 -0.08282754894162281 CGAYELLSGP 10 Unmodified _CGAYELLSGP_ 0 0 0 REV__ENST00000463806.5_1_9:116327879-116344367:+|nuORF REV__ENST00000463806.5_1_9:116327879-116344367:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2370300292969 2 505.236593 1008.45863 1.6313 0.00082419 -0.42515 -0.0002148 1.2061 0.00060939 505.2363057475211 62.437 0.23071 56.262 56.23 56.461 -6.1757 15 11 2 0 0 0 0.50944 1 40322 40322 15.847 1.2655 1 11628000 + 4554 27360 2965 3034 5352 5352 -0.04525871453779473 CGCENVIELD 10 Unmodified _CGCENVIELD_ 0 0 0 ENSG00000161048|ENST00000465647|NAPEPLD ENSG00000161048|ENST00000465647|NAPEPLD ENSG00000161048|ENST00000465647|NAPEPLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.4900817871094 3 365.487942 1093.442 0.030675 1.1211E-05 3.0808 0.001126 3.1115 0.0011372 365.4899614164218 62.584 0.46558 62.584 62.454 62.92 0 46 16 4 0 0 0 0.67459 1 34979 34979 3.0723 0 1 3918800 4555 6782 2966 3035 5353 5353 -0.10098740402054318 CGCGCGKGCC 10 Unmodified _CGCGCGKGCC_ 0 0 0 nc|ENSG00000284643|A0A286YFB4|SCYGR2;nc|ENSG00000284667|A0A286YF46|SCYGR5;nc|ENSG00000285843|P0DSO2|SCYGR9;nc|ENSG00000284718|A0A286YF01|SCYGR7;nc|ENSG00000284725|A0A286YF77|SCYGR6 nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284643|A0A286YFB4|SCYGR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 890.24462890625 1 890.244581 889.237305 0.63237 0.00056297 -0.49778 -0.00044315 0.13459 0.00011982 890.2435159554327 102.7 0.058884 96.523 96.492 96.551 -6.1757 14 11 2 0 0 0 0.72607 1 68912 68912 0 0 1 3527500 4556 16614 2967 3036 5354 5354 -0.211744172894214 CGCGFFPFLI 10 Unmodified _CGCGFFPFLI_ 0 0 0 ENST00000437198.6_1_16:14530386-14530566:-|nuORF ENST00000437198.6_1_16:14530386-14530566:-|nuORF ENST00000437198.6_1_16:14530386-14530566:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2568359375 2 552.256274 1102.49799 0.81679 0.00045108 0.30446 0.00016814 1.1213 0.00061922 552.2564789506547 73.295 1.1792 73.295 72.883 74.062 0 219 55 6 0 0 0 0.65502 1 40830 40830 7.9102 7.9102 1 271680000 4557 13345 2968 3037 5355 5355 -0.049154427039184156 CGCGFFPFLI 10 Unmodified _CGCGFFPFLI_ 0 0 0 ENST00000437198.6_1_16:14530386-14530566:-|nuORF ENST00000437198.6_1_16:14530386-14530566:-|nuORF ENST00000437198.6_1_16:14530386-14530566:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2578735351562 2 552.256274 1102.49799 0.81375 0.0004494 0.93117 0.00051424 1.7449 0.00096364 552.2568677552988 73.69 0.84683 73.214 72.894 73.741 -0.47588 165 38 5 0 0 0 0.65502 1 40197 40197 7.9102 1.5561 1 143880000 4558 13345 2968 3037 5356 5356 -0.049154427039184156 CGDMAVAF 8 Unmodified _CGDMAVAF_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1907653808594 2 407.167124 812.319696 NaN NaN NaN NaN NaN NaN NaN 71.476 1 71.476 70.976 71.976 0 0 0 0 0.97444 1 39812 39812 2.8892 0.31174 1 4559 7110 2969 3038 5357 5357 -0.09397112622957593 CGEWGVSLHF 10 Unmodified _CGEWGVSLHF_ 0 0 0 REV__ENST00000258739.8_1_7:6501985-6502291:-|nuORF REV__ENST00000258739.8_1_7:6501985-6502291:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1741027832031 3 378.839415 1133.49641 -0.48697 -0.00018448 2.4458 0.00092658 1.9589 0.0007421 378.8396713254398 25.727 0.39546 25.727 25.466 25.862 0 36 18 3 0 0 0 0.69064 1 13185 13185 1.9064 0.1641 1 1371200 + 4560 24946 2970 3039 5358 5358 -0.06499360468319537 CGEWGVSLHF 10 Unmodified _CGEWGVSLHF_ 0 0 0 REV__ENST00000258739.8_1_7:6501985-6502291:-|nuORF REV__ENST00000258739.8_1_7:6501985-6502291:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2098388671875 3 378.839415 1133.49641 -0.13585 -5.1464E-05 3.7081 0.0014048 3.5723 0.0013533 378.84160871081065 45.4 0.13559 45.4 45.324 45.46 0 12 7 3 0 0 0 0.23862 1 24773 24773 1.9064 0.1641 1 7094200 + 4561 24946 2970 3039 5359 5359 -0.06499360468319537 CGFGKTGIIDY 11 Unmodified _CGFGKTGIIDY_ 0 0 0 ENSG00000123610|ENST00000243347|TNFAIP6 ENSG00000123610|ENST00000243347|TNFAIP6 ENSG00000123610|ENST00000243347|TNFAIP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2839965820312 2 587.284074 1172.5536 0.40046 0.00023518 -1.7387 -0.0010211 -1.3383 -0.00078595 587.2831375108217 64.786 0.14993 64.301 64.253 64.403 -0.48512 10 6 2 0 0 0 0.47965 1 35358 35358 17.443 3.5366 1 1113700 4562 3723 2971 3040 5360 5360 -0.02577937982596268 CGGPGRLK 8 Unmodified _CGGPGRLK_ 0 0 0 ENST00000587028.1_1_17:40172139-40173690:+|nuORF;ENST00000462043.6_1_17:40172139-40175723:+|nuORF ENST00000587028.1_1_17:40172139-40173690:+|nuORF ENST00000587028.1_1_17:40172139-40173690:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5380554199219 2 394.215798 786.417042 -0.11366 -4.4806E-05 -2.1138 -0.00083331 -2.2275 -0.00087811 394.2148324884315 33.235 0.19838 33.264 33.163 33.361 0.028934 14 8 2 0 0 0 8.7369 1 17463 17463 2.0598 0 1 1532200 4563 13670 2972 3041 5361 5361 0.015290373681978053 CGHLKPSQSDA 11 Unmodified _CGHLKPSQSDA_ 0 0 0 REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF REV__ENST00000532206.1_1_16:50731151-50744498:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.77880859375 2 571.76658 1141.51861 0.69027 0.00039468 0.74761 0.00042746 1.4379 0.00082213 571.766560360884 46.391 0.39103 46.054 45.84 46.231 -0.33664 87 19 7 0 0 0 0.59689 1 24782 24782 11.495 0 1 119220000 + 4564 22193 2973 3042 5362 5362 -0.046491807905340465 CGHRRCRRRC 10 Unmodified _CGHRRCRRRC_ 0 0 0 REV__ENST00000302418.4_1_10:32344946-32345177:-|nuORF REV__ENST00000302418.4_1_10:32344946-32345177:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.881959 1301.62405 NaN NaN NaN NaN NaN NaN NaN 18.871 1 18.871 18.371 19.371 0 0 0 0 1.0024 1 9409 9409 0.13989 0.056541 1 + 4565 25333 2974 3043 5363 5363 -0.014698216269152908 CGHRRCRRRC 10 Unmodified _CGHRRCRRRC_ 0 0 0 REV__ENST00000302418.4_1_10:32344946-32345177:-|nuORF REV__ENST00000302418.4_1_10:32344946-32345177:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823852539062 3 434.881959 1301.62405 NaN NaN NaN NaN NaN NaN NaN 88.947 1 88.947 88.447 89.447 0 0 0 0 1.0024 1 49224 49224 0.13989 0.056541 1 + 4566 25333 2974 3043 5364 5364 -0.014698216269152908 CGIKAGKK 8 Unmodified _CGIKAGKK_ 0 0 0 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7422790527344 2 402.741648 803.468743 -0.42429 -0.00017088 1.2029 0.00048448 0.77865 0.0003136 402.7421699772139 31.822 1.1585 31.852 31.432 32.591 0.030104 111 51 3 0 0 0 0.80722 1 16654 16654 2.3027 1.6124 1 24389000 + 4567 22521 2975 3044 5365 5365 0.05914781062108432 CGIKAGKK 8 Unmodified _CGIKAGKK_ 0 0 0 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 402.741648 803.468743 -0.6291 -0.00025336 2.1796 0.0008778 1.5505 0.00062444 402.7424445906371 31.968 0.65755 31.968 31.64 32.297 0 0.088903 0.00031787 NaN 2.3027 54 32 2 NaN NaN NaN NaN 0 NaN NaN 0 2522800 + 4568 22521 2975 3044 0.05914781062108432 CGIKAGKK 8 Unmodified _CGIKAGKK_ 0 0 0 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 402.741648 803.468743 0.053529 2.1558E-05 2.0545 0.00082744 2.108 0.000849 402.7424144986536 31.946 0.59159 31.817 31.503 32.095 -0.12915 -0.061793 0.00021715 NaN 2.3027 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1003400 + 4569 22521 2975 3044 0.05914781062108432 CGKHFGTI 8 Unmodified _CGKHFGTI_ 0 0 0 ENSG00000109079|ENST00000226225|TNFAIP1;ENST00000541077.1_1_12:109895986-109915086:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF;nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10 ENSG00000109079|ENST00000226225|TNFAIP1 ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2223205566406 2 431.71563 861.416708 0.78143 0.00033736 0.59876 0.00025849 1.3802 0.00059585 431.715747414026 47.528 0.19881 47.489 47.319 47.518 -0.038643 13 8 2 0 0 0 8.7369 1 25542 25542 2.0598 0 1 1363000 4570 2627 2976 3045 5366 5366 -0.019543823516414704 CGKSAAGG 8 Unmodified _CGKSAAGG_ 0 0 0 REV__ENSG00000157014|ENST00000448281|TATDN2 REV__ENSG00000157014|ENST00000448281|TATDN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.2955322265625 1 650.292636 649.285359 -0.66938 -0.00043529 3.2785 0.002132 2.6092 0.0016967 650.2961450817082 48.532 0.55932 48.532 48.293 48.852 0 34 26 2 0 0 0 0.80975 1 26652 26652 0.79363 0 1 2040400 + 4571 21359 2977 3046 5367 5367 -0.053311927195409226 CGKSFRVHSS 10 Unmodified _CGKSFRVHSS_ 0 0 0 ENSG00000147117|ENST00000377073|ZNF157 ENSG00000147117|ENST00000377073|ZNF157 ENSG00000147117|ENST00000377073|ZNF157 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2716674804688 2 554.271832 1106.52911 0.6512 0.00036094 -1.975 -0.0010947 -1.3237 -0.00073372 554.2711016564624 45.794 0.21857 45.794 45.664 45.882 0 16 10 2 0 0 0 0.46514 1 24975 24975 18.146 5.9057 1 4218800 4572 5821 2978 3047 5368 5368 -0.01989153345448358 CGKVFIFPSAL 11 Unmodified _CGKVFIFPSAL_ 0 0 0 nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.5510864257812 3 394.551094 1180.63145 -0.58512 -0.00023086 0.15116 5.9639E-05 -0.43396 -0.00017122 394.55118866903103 17.926 0.3098 17.926 17.803 18.113 0 153 44 5 0 0 0 0.66428 1 8816 8816 3.8459 0.25323 1 18773000 4573 8372 2979 3048 5369 5369 0.04836119673450412 CGKVFIFPSAL 11 Unmodified _CGKVFIFPSAL_ 0 0 0 nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5494384765625 3 394.551094 1180.63145 -0.058459 -2.3065E-05 -0.43879 -0.00017313 -0.49725 -0.00019619 394.55109637058376 17.937 0.1615 17.944 17.838 17.999 0.0060463 20 11 2 0 0 0 0.59689 1 9046 9046 6.2344 0 1 2122800 4574 8372 2979 3048 5370 5370 0.04836119673450412 CGLLAGRVWH 10 Unmodified _CGLLAGRVWH_ 0 0 0 REV__nc|ENSG00000120903|Q15822-2|CHRNA2 REV__nc|ENSG00000120903|Q15822-2|CHRNA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7615356445312 2 556.295111 1110.57567 0.62576 0.00034811 0.40732 0.00022659 1.0331 0.0005747 556.2956453133061 44.067 0.54596 39.303 39.002 39.548 -4.7648 94 36 3 0 0 0 0.23325 1 26704 26704 10.074 10.074 1 102880000 + 4575 19269 2980 3049 5371 5371 0.024803312764788643 CGLWHFVAY 9 Unmodified _CGLWHFVAY_ 0 0 0 REV__ENSG00000177535|ENST00000641149|OR2B11 REV__ENSG00000177535|ENST00000641149|OR2B11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2283935546875 2 548.257662 1094.50077 0.7058 0.00038696 2.5824 0.0014158 3.2882 0.0018028 548.2588762706793 28.742 0.20144 25.593 25.476 25.677 -3.1482 12 9 2 0 0 0 0.20554 1 16034 16034 14.582 6.6715 1 7015400 + 4576 22990 2981 3050 5372 5372 -0.04269851254753121 CGPGHSES 8 Unmodified _CGPGHSES_ 0 0 0 ENST00000377996.5_1_9:35846336-35847153:+|nuORF ENST00000377996.5_1_9:35846336-35847153:+|nuORF ENST00000377996.5_1_9:35846336-35847153:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1481018066406 2 387.147778 772.281002 NaN NaN NaN NaN NaN NaN NaN 55.146 1 55.146 54.646 55.646 0 0 0 0 0.97444 1 30629 30629 2.8892 2.0956 1 4577 12538 2982 3051 5373 5373 -0.11424701933117376 CGPPPPAP 8 Unmodified _CGPPPPAP_ 0 0 0 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 REV__nc|ENSG00000140948|Q8WYQ9|ZCCHC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1791381835938 2 368.178349 734.342146 1.0484 0.000386 0.33431 0.00012308 1.3827 0.00050909 368.17851773841716 55.951 0.96529 50.029 49.706 50.671 -5.9211 67 56 2 0 0 0 0.61999 1 35636 35636 24.21 7.1234 1 40733000 + 4578 20502 2983 3052 5374 5374 -0.03565145163031502 CGRAKPVATAL 11 Unmodified _CGRAKPVATAL_ 0 0 0 ENSG00000184601|ENST00000557649|C14orf180 ENSG00000184601|ENST00000557649|C14orf180 ENSG00000184601|ENST00000557649|C14orf180 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2061157226562 3 362.874459 1085.60155 1.4324 0.00051979 -0.7919 -0.00028736 0.64053 0.00023243 362.8743874581894 28.729 0.46246 25.581 25.282 25.744 -3.1482 55 22 4 0 0 0 0.48615 1 15953 15953 9.7643 0 1 54991000 4579 9275 2984 3053 5375 5375 0.06217180728094718 CGRRGRGAL 9 Unmodified _CGRRGRGAL_ 0 0 0 ENST00000304222.2_1_17:15848237-15848780:+|nuORF ENST00000304222.2_1_17:15848237-15848780:+|nuORF ENST00000304222.2_1_17:15848237-15848780:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2599182128906 2 473.261602 944.508651 NaN NaN NaN NaN NaN NaN NaN 63.957 1 63.957 63.457 64.457 0 0 0 0 0.82396 1 35670 35670 4.756 1.4747 1 4580 11602 2985 3054 5376 5376 0.03417720785398615 CGRRKGKQY 9 Unmodified _CGRRKGKQY_ 0 0 0 nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2 nc|ENSG00000180881|Q9BXY5-3|CAPS2 nc|ENSG00000180881|Q9BXY5-3|CAPS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8660583496094 3 365.866187 1094.57673 -0.016132 -5.9022E-06 -0.12793 -4.6805E-05 -0.14406 -5.2707E-05 365.86623451919957 4.4396 0.14872 4.4333 4.3901 4.5388 -0.0062966 120 58 3 0 0 0 0.21874 1 2235 2235 1.1933 0 1 1664200 4581 8929 2986 3055 5377 5377 0.033225456454147206 CGSEEDESRF 10 Unmodified _CGSEEDESRF_ 0 0 0 ENSG00000060709|ENST00000690449|RIMBP2 ENSG00000060709|ENST00000690449|RIMBP2 ENSG00000060709|ENST00000690449|RIMBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8204345703125 3 386.817115 1157.42952 1.5403 0.0005958 1.8975 0.00073398 3.4378 0.0013298 386.8179489354224 20.668 0.382 17.975 17.742 18.124 -2.693 43 23 2 0 0 0 0.70951 1 10936 10936 0.77653 0 1 3151700 4582 831 2987 3056 5378 5378 -0.1429006054072488 CHACFGDWD 9 Unmodified _CHACFGDWD_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MSMS AL20221201_MKP_PDAC_01 4 351.8464050292969 3 351.789955 1052.34804 NaN NaN NaN NaN NaN NaN NaN 8.7034 1 6.2215 5.7215 6.7215 -2.482 0 0 0 0.8622 1 4393 4393 0 0 1 4583 8175 2988 3057 5379 5379 -0.1760441471365084 CHARRLLGGF 10 Unmodified _CHARRLLGGF_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2065734863281 3 377.206432 1128.59747 1.1088 0.00041824 0.5066 0.00019109 1.6154 0.00060933 377.20665309861675 46.533 0.44553 46.499 46.267 46.712 -0.033417 32 21 2 0 0 0 0.68719 1 25038 25038 2.086 0.17963 1 3006400 + 4584 22466 2989 3058 5380 5380 0.03831136025064552 CHARRLLGGF 10 Unmodified _CHARRLLGGF_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 377.206432 1128.59747 0.61641 0.00023252 -0.95393 -0.00035983 -0.33751 -0.00012731 377.2059217317347 46.769 0.21454 46.433 46.347 46.562 -0.33664 -0.033312 -0.00051458 NaN 2.086 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2519800 + 4585 22466 2989 3058 0.03831136025064552 CHARRLLGGF 10 Unmodified _CHARRLLGGF_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 377.206432 1128.59747 1.1088 0.00041824 0.5066 0.00019109 1.6154 0.00060933 377.20665309861675 46.533 0.44553 46.499 46.267 46.712 -0.033417 0.033312 0.0011382 NaN 2.086 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 3006400 + 4586 22466 2989 3058 0.03831136025064552 CHCKVVILG 9 Unmodified _CHCKVVILG_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2627868652344 2 486.26189 970.509228 NaN NaN NaN NaN NaN NaN NaN 86.431 1 85.928 85.428 86.428 -0.50318 0 0 0 0.85798 1 47292 47292 0.52476 0 1 4587 778 2990 3059 5381 5381 0.02279379390233771 CHERCDTST 9 Unmodified _CHERCDTST_ 0 0 0 REV__nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT REV__nc|ENSG00000197568|Q9XRX5|ANKRD13C-DT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.707763671875 2 526.200215 1050.38588 0.76759 0.00040391 1.2241 0.00064414 1.9917 0.001048 526.2005833386904 60.723 0.23013 60.723 60.581 60.811 0 14 9 2 0 0 0 0.21564 1 33796 33796 3.9444 1.0552 1 481990 + 4588 29890 2991 3060 5382 5382 -0.13729948518857782 CHGLDHDY 8 Unmodified _CHGLDHDY_ 0 0 0 CON__Q148H6 CON__Q148H6 CON__Q148H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.1878662109375 2 480.187434 958.360315 0.074719 3.5879E-05 0.26069 0.00012518 0.33541 0.00016106 480.18774902970927 43.637 0.36586 43.637 43.418 43.784 0 92 17 8 0 0 0 0.80143 2 23635 23635;23743 5.7604 5.7604 1 259060000 + 4589 184 2992 3061 5383;5384 5383 -0.12053054978980526 CHGLDHDY 8 Unmodified _CHGLDHDY_ 0 0 0 CON__Q148H6 CON__Q148H6 CON__Q148H6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.1881103515625 2 480.187434 958.360315 1.1573 0.00055571 0.32748 0.00015725 1.4848 0.00071296 480.1876645829819 50.709 0.57165 45.06 44.744 45.316 -5.649 149 35 7 0 0 0 0.80143 1 31829 31829 5.7604 3.1829 1 312790000 + 4590 184 2992 3061 5385 5385 -0.12053054978980526 CHHTHFFLPD 10 Unmodified _CHHTHFFLPD_ 0 0 0 REV__ENST00000267116.7_1_12:56636474-56636675:-|nuORF REV__ENST00000267116.7_1_12:56636474-56636675:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5218811035156 3 418.522197 1252.54476 NaN NaN NaN NaN NaN NaN NaN 56.598 1 56.113 55.613 56.613 -0.48554 0 0 0 0.97302 1 30741 30741 1.7423 0 1 + 4591 25109 2993 3062 5386 5386 -0.07140866828422077 CHKSFSRSSNF 11 Unmodified _CHKSFSRSSNF_ 0 0 0 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.2966918945312 2 650.298578 1298.5826 0.0074492 4.8442E-06 -2.0522 -0.0013346 -2.0448 -0.0013297 650.2969202304785 38.033 0.22338 38.033 37.905 38.129 0 22 10 3 0 0 0 0.65846 1 20295 20295 8.1555 0.54658 1 1266600 4592 9809 2994 3063 5387 5387 -0.05474400633602272 CHKSFSRSSNF 11 Unmodified _CHKSFSRSSNF_ 0 0 0 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 650.298578 1298.5826 0.0074492 4.8442E-06 -2.0522 -0.0013346 -2.0448 -0.0013297 650.2969202304785 38.033 0.22338 38.033 37.905 38.129 0 -0.013798 -0.00030333 NaN 8.1555 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1266600 4593 9809 2994 3063 -0.05474400633602272 CHKSFSRSSNF 11 Unmodified _CHKSFSRSSNF_ 0 0 0 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 ENSG00000196391|ENST00000354377|ZNF774 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 650.298578 1298.5826 -0.055388 -3.6019E-05 -1.4025 -0.00091207 -1.4579 -0.00094809 650.7989556933468 38.347 0.28801 38.06 37.866 38.154 -0.28687 0.013798 0.00054163 NaN 8.1555 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1028800 4594 9809 2994 3063 -0.05474400633602272 CHNRKWLRL 9 Unmodified _CHNRKWLRL_ 0 0 0 REV__nc|ENSG00000136250|P28039-2|AOAH REV__nc|ENSG00000136250|P28039-2|AOAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8413696289062 2 613.340384 1224.66621 3.1586 0.0019373 -0.1998 -0.00012254 2.9588 0.0018147 613.3420590446678 97.128 1.833 97.121 96.772 98.605 -0.007019 278 68 6 0 0 0 0.61381 1 54140 54140 0.52476 0.066424 1 144880000 + 4595 20151 2995 3064 5388 5388 0.06286800324755859 CHPCCPGGG 9 Unmodified _CHPCCPGGG_ 0 0 0 ENST00000599345.1_1_19:4101110-4123872:-|nuORF ENST00000599345.1_1_19:4101110-4123872:-|nuORF ENST00000599345.1_1_19:4101110-4123872:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 831.6344604492188 1 830.274225 829.266949 -0.016901 -1.4033E-05 1.8651 0.0015486 1.8482 0.0015345 830.2742060127738 85.48 0.076096 85.541 85.491 85.568 0.061646 4 2 2 0 0 0 0.62242 1 47300 47300 0 0 1 6018200 4596 15786 2996 3065 5389 5389 -0.1545139395740307 CHPCHACF 8 Unmodified _CHPCHACF_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.1649780273438 2 459.164393 916.314233 1.4717 0.00067577 0.67557 0.0003102 2.1473 0.00098597 459.1646519075048 33.988 0.29716 30.003 29.785 30.082 -3.9853 24 15 2 0 0 0 0.80624 1 19479 19479 2.8892 0 1 5194700 4597 8175 2997 3066 5390 5390 -0.14727114686422738 CHPCSPCACL 10 Unmodified _CHPCSPCACL_ 0 0 0 REV__ENST00000562648.2_1_16:743493-744282:-|nuORF REV__ENST00000562648.2_1_16:743493-744282:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.1896362304688 2 517.189751 1032.36495 NaN NaN NaN NaN NaN NaN NaN 74.28 1 74.28 73.78 74.78 0 0 0 0 0.99091 1 41336 41336 1.6526 0.85899 1 + 4598 28859 2998 3067 5391 5391 -0.1499395342373191 CHQSLWCC 8 Unmodified _CHQSLWCC_ 0 0 0 REV__ENST00000330342.7_1_12:124233270-124235768:+|nuORF REV__ENST00000330342.7_1_12:124233270-124235768:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.1836242675781 2 490.182783 978.351013 NaN NaN NaN NaN NaN NaN NaN 45.101 1 45.101 44.601 45.601 0 0 0 0 0.97444 1 24566 24566 2.5775 0 1 + 4599 25590 2999 3068 5392 5392 -0.13902862860516052 CHSRMWQL 8 Unmodified _CHSRMWQL_ 0 0 0 ENSG00000212658|ENST00000391353|KRTAP29-1 ENSG00000212658|ENST00000391353|KRTAP29-1 ENSG00000212658|ENST00000391353|KRTAP29-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1677551269531 3 354.165356 1059.47424 0.46637 0.00016517 -0.2771 -9.8138E-05 0.18927 6.7033E-05 354.1665277654727 85.439 0.75462 84.938 84.715 85.469 -0.5015 242 54 6 0 0 0 0.80975 1 46970 46970 0.45834 0 1 42254000 4600 10414 3000 3069 5393 5393 -0.05311863417728091 CHVCHCGGGGC 11 Unmodified _CHVCHCGGGGC_ 0 0 0 ENST00000444945.1_1_19:11777510-11777738:-|nuORF ENST00000444945.1_1_19:11777510-11777738:-|nuORF ENST00000444945.1_1_19:11777510-11777738:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.6670532226562 2 516.666974 1031.3194 NaN NaN NaN NaN NaN NaN NaN 4.5938 1 4.5209 4.0209 5.0209 -0.072869 0 0 0 0.9435 1 2270 2270 0 0 1 4601 13444 3001 3070 5394 5394 -0.1950117888609384 CHVENMQI 8 Unmodified _CHVENMQI_ 0 0 0 REV__ENST00000583159.1_1_17:25853549-25853627:-|nuORF REV__ENST00000583159.1_1_17:25853549-25853627:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2148132324219 2 487.215137 972.415722 0.99252 0.00048357 -3.1292 -0.0015246 -2.1367 -0.001041 487.2136368308173 57.419 0.10484 51.391 51.356 51.461 -6.0275 6 5 2 0 0 0 0.74163 1 36751 36751 13.508 2.3934 1 11700000 + 4602 29077 3002 3071 5395 5395 -0.07158964782854582 CHVFMVDPDL 10 Unmodified _CHVFMVDPDL_ 0 0 0 nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000502947.1_1_4:3317897-3344786:+|nuORF nc|ENSG00000159788|O14924-5|RGS12 nc|ENSG00000159788|O14924-5|RGS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2650756835938 2 588.264827 1174.5151 NaN NaN NaN NaN NaN NaN NaN 65.014 1 65.014 64.514 65.514 0 0 0 0 0.99091 1 36268 36268 1.6526 0 1 4603 6675 3003 3072 5396 5396 -0.06517566888760484 CHVLDDCS 8 Unmodified _CHVLDDCS_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1703796386719 2 446.170395 890.326238 1.0396 0.00046385 -1.297 -0.00057869 -0.2574 -0.00011485 446.1696110285256 48.515 0.97855 43.119 42.594 43.572 -5.3961 109 58 3 0 0 0 0.80676 1 30439 30439 2.5775 0.27475 1 43647000 + 4604 29889 3004 3073 5397 5397 -0.12331219462237186 CHWHLLNWLFF 11 Unmodified _CHWHLLNWLFF_ 0 0 0 REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2505493164062 3 505.916658 1514.72815 -0.89687 -0.00045374 2.0666 0.0010455 1.1697 0.00059178 506.25174073352315 36.203 0.2001 35.953 35.886 36.086 -0.2497 18 8 3 0 0 0 0.73992 1 19004 19004 0.50596 0.051438 1 3336200 + 4605 25863 3005 3074 5398 5398 -0.008628930467693863 CHYRWNPDF 9 Unmodified _CHYRWNPDF_ 0 0 0 ENST00000393784.7_1_5:172378203-172378416:+|nuORF ENST00000393784.7_1_5:172378203-172378416:+|nuORF ENST00000393784.7_1_5:172378203-172378416:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.76611328125 2 619.264007 1236.51346 -0.67455 -0.00041772 2.9258 0.0018119 2.2513 0.0013941 619.2657126465291 77.617 0.23704 77.134 77.032 77.269 -0.4826 16 10 2 0 0 0 0.54444 1 42541 42541 4.756 0 1 766390 4606 12716 3006 3075 5399 5399 -0.09533439862525483 CIAEVENDEMP 11 Unmodified _CIAEVENDEMP_ 0 0 0 nc|ENSG00000163631|P02768-2|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1 nc|ENSG00000163631|P02768-2|ALB nc|ENSG00000163631|P02768-2|ALB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.1723327636719 3 417.174023 1248.50024 0.4038 0.00016845 -0.72982 -0.00030446 -0.32602 -0.00013601 417.1734109070695 49.694 0.36965 49.694 49.536 49.905 0 25 16 2 0 0 0 0.7326 1 27465 27465 0.40827 0 1 3324000 + 4607 161 3007 3076 5400 5400 -0.11407103547435327 CIAFMGDL 8 Unmodified _CIAFMGDL_ 0 0 0 REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 2 435.198425 868.382296 NaN NaN NaN NaN NaN NaN NaN 104.61 1 104.61 104.11 105.11 0 0 0 0 0.97444 1 57568 57568 0.69038 0 1 + 4608 22481 3008 3077 5401 5401 -0.057159665547601435 CIAFMGDL 8 Unmodified _CIAFMGDL_ 0 0 0 REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.1988220214844 2 435.198425 868.382296 NaN NaN NaN NaN NaN NaN NaN 104.67 1 104.57 104.07 105.07 -0.096809 0 0 0 0.97444 1 56999 56999 0.69038 0 1 + 4609 22481 3008 3077 5402 5402 -0.057159665547601435 CIASAVYLQR 10 Unmodified _CIASAVYLQR_ 0 0 0 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.1963500976562 3 375.202465 1122.58556 NaN NaN NaN NaN NaN NaN NaN 102.74 1 102.69 102.19 103.19 -0.047928 0 0 0 0.99248 1 57061 57061 1.7423 0.54893 1 + 4610 21410 3009 3078 5403 5403 0.02917474491187022 CIATDTSQYDL 11 Unmodified _CIATDTSQYDL_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.51806640625 3 410.516666 1228.52817 1.5478 0.00063539 1.2042 0.00049436 2.752 0.0011298 410.51716974337324 41.663 0.35386 37.055 36.923 37.277 -4.6079 37 22 2 0 0 0 0.6889 1 25063 25063 4.4062 0 1 7719400 4611 7550 3010 3079 5404 5404 -0.07695457295676533 CIAYEIMCF 9 Unmodified _CIAYEIMCF_ 0 0 0 ENST00000504768.2_1_5:93246475-93410459:-|nuORF ENST00000504768.2_1_5:93246475-93410459:-|nuORF ENST00000504768.2_1_5:93246475-93410459:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7322998046875 2 546.731774 1091.449 0.38655 0.00021134 0.79639 0.00043541 1.1829 0.00064675 546.7322866714743 84.08 0.43259 83.58 83.365 83.797 -0.49961 96 18 7 0 0 0 0.5029 2 46046 45941;46046 7.2892 1.7518 1 11551000 4612 14499 3011 3080 5405;5406 5406 -0.09307099055195067 CIAYVFEVSAS 11 Unmodified _CIAYVFEVSAS_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8577880859375 3 396.858363 1187.55326 1.3218 0.00052457 -1.8895 -0.00074986 -0.56769 -0.00022529 396.85745065291985 20.818 0.20849 18.125 18.036 18.244 -2.693 18 12 2 0 0 0 0.69316 1 11121 11121 2.2527 0 1 2188800 4613 10021 3012 3081 5407 5407 -0.033013577024348706 CICFIYLIT 9 Unmodified _CICFIYLIT_ 0 0 0 ENST00000503771.1_1_3:45266207-45266372:-|nuORF ENST00000503771.1_1_3:45266207-45266372:-|nuORF ENST00000503771.1_1_3:45266207-45266372:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7793579101562 2 544.779582 1087.54461 NaN NaN NaN NaN NaN NaN NaN 94.695 1 94.695 94.195 95.195 0 0 0 0 0.85737 1 52344 52344 0.6015 0 1 4614 14476 3013 3082 5408 5408 0.004339971273566334 CIDTTRVDY 9 Unmodified _CIDTTRVDY_ 0 0 0 REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2496948242188 2 543.250231 1084.48591 0.13838 7.5176E-05 -0.83827 -0.00045539 -0.69989 -0.00038022 543.250107804707 31.535 0.54424 31.535 31.234 31.778 0 91 26 5 0 0 0 0.45045 1 16543 16543 10.074 1.9184 1 42409000 + 4615 17090 3014 3083 5409 5409 -0.05295387913406557 CIELPPLSLY 10 Unmodified _CIELPPLSLY_ 0 0 0 ENST00000425384.6_1_6:3183394-3183592:-|nuORF ENST00000425384.6_1_6:3183394-3183592:-|nuORF ENST00000425384.6_1_6:3183394-3183592:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.312744140625 2 574.307018 1146.59948 0.68787 0.00039505 1.7263 0.00099145 2.4142 0.0013865 574.3070014503503 68.762 0.66925 68.787 68.436 69.106 0.025154 91 31 5 0 0 0 0.44373 1 37647 37647 19.257 3.4098 1 58018000 4616 13162 3015 3084 5410 5410 0.03204707199643053 CIFYLVRQF 9 Unmodified _CIFYLVRQF_ 0 0 0 REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16 REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7889404296875 2 594.815344 1187.61614 0.71451 0.000425 -1.1252 -0.00066931 -0.41073 -0.00024431 595.3157222719251 67.884 0.22063 67.402 67.255 67.475 -0.48218 20 9 3 0 0 0 0.20727 1 37024 37024 7.9102 0 1 806760 + 4617 16951 3016 3085 5411 5411 0.02983252876242659 CIIDKEVSL 9 Unmodified _CIIDKEVSL_ 0 0 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2755126953125 2 510.275718 1018.53688 0.31638 0.00016144 -0.5301 -0.0002705 -0.21371 -0.00010905 510.2758633420918 62.965 0.40115 62.965 62.87 63.272 0 26 16 2 0 0 0 0.16226 1 35126 35126 26.884 6.43 1 858310 4618 9768 3017 3086 5412 5412 0.028355611314509588 CIIDKEVSL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))IIDKEVSL_ C(1)IIDKEVSL C(86)IIDKEVSL 0 1 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7868041992188 2 538.78645 1075.55835 0.45112 0.00024306 -0.68454 -0.00036882 -0.23342 -0.00012576 538.786458192298 56.874 0.53157 50.897 50.615 51.147 -5.9769 70 31 4 0 0 0 0.0089732 2 36213 36213;36336 86.332 31.558 1 368330000 4619 9768 3017 3087 5413;5414 5413 893 0.023589461601659423 CILSGIMSV 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILSGIMSV_ C(1)ILSGIMSV C(44)ILSGIMSV 0 1 0 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MSMS AL20221201_MKP_PDAC_01 4 490.2496948242188 2 490.251188 978.487824 NaN NaN NaN NaN NaN NaN NaN 92.739 1 86.563 86.063 87.063 -6.1757 0 0 0 0.096036 1 61339 61339 44.407 10.305 1 4620 793 3018 3088 5415 5415 66 -0.0022805042914342266 CILSGIMSV 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))ILSGIMSV_ C(1)ILSGIMSV C(51)ILSGIMSV 0 1 0 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MSMS AL20221201_MKP_PDAC_01 4 490.2504577636719 2 490.251188 978.487824 NaN NaN NaN NaN NaN NaN NaN 92.972 1 86.796 86.296 87.296 -6.1757 0 0 0 0.071041 1 61506 61506 50.855 14.811 1 4621 793 3018 3088 5416 5416 66 -0.0022805042914342266 CIPRKRGPGVL 11 Unmodified _CIPRKRGPGVL_ 0 0 0 ENST00000303991.4_1_5:176025423-176025792:-|nuORF ENST00000303991.4_1_5:176025423-176025792:-|nuORF ENST00000303991.4_1_5:176025423-176025792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.357421875 2 598.358242 1194.70193 NaN NaN NaN NaN NaN NaN NaN 103.19 1 103.14 102.64 103.64 -0.047928 0 0 0 0.94307 1 57304 57304 0.30703 0 1 4622 11601 3019 3089 5417 5417 0.11236837781780196 CIPYHWWYRWW 11 Unmodified _CIPYHWWYRWW_ 0 0 0 REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.38525390625 2 848.387531 1694.76051 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.71 103.21 104.21 -0.048737 0 0 0 0.9435 1 57619 57619 0 0 1 + 4623 26710 3020 3090 5418 5418 -0.059081056437889856 CIRPIRSG 8 Unmodified _CIRPIRSG_ 0 0 0 REV__ENST00000237536.8_2_20:35410688-35410808:-|nuORF REV__ENST00000237536.8_2_20:35410688-35410808:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2549438476562 2 451.255454 900.496355 NaN NaN NaN NaN NaN NaN NaN 70.545 1 70.545 70.045 71.045 0 0 0 0 0.97444 1 39304 39304 3.9444 1.6417 1 + 4624 24832 3021 3091 5419 5419 0.04212684322351379 CISVWNVF 8 Unmodified _CISVWNVF_ 0 0 0 nc|ENSG00000163053|Q7RTX9-2|SLC16A14;ENSG00000163053|ENST00000295190|SLC16A14 nc|ENSG00000163053|Q7RTX9-2|SLC16A14 nc|ENSG00000163053|Q7RTX9-2|SLC16A14 MSMS AL20221201_MKP_PDAC_01 4 484.2371520996094 2 484.238938 966.463324 NaN NaN NaN NaN NaN NaN NaN 19.17 1 16.513 16.013 17.013 -2.6564 0 0 0 0.96305 1 10134 10134 7.9102 0.62092 1 4625 6944 3022 3092 5420 5420 -0.021249425203563987 CIVPSPKAIFF 11 Unmodified _CIVPSPKAIFF_ 0 0 0 REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.338623046875 2 611.338652 1220.66275 0.85125 0.0005204 -1.8211 -0.0011133 -0.96982 -0.00059289 611.3380397506872 102.19 0.11492 96.016 95.957 96.072 -6.1757 10 4 3 0 0 0 0.48615 1 68593 68593 17.113 1.2657 1 7389700 + 4626 24067 3023 3093 5421 5421 0.06124692707521717 CIWFQQLLLSL 11 Unmodified _CIWFQQLLLSL_ 0 0 0 nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2522277832031 3 455.252936 1362.73698 -0.002616 -1.1909E-06 -0.21666 -9.8637E-05 -0.21928 -9.9828E-05 455.2527796114794 24.648 0.29266 24.648 24.531 24.823 0 47 16 4 0 0 0 0.73237 1 12674 12674 1.2148 0.76031 1 3291100 4627 4181 3024 3094 5422 5422 0.07012035799061778 CKATQGGR 8 Unmodified _CKATQGGR_ 0 0 0 ENST00000558213.3_1_15:67920224-67920521:+|nuORF ENST00000558213.3_1_15:67920224-67920521:+|nuORF ENST00000558213.3_1_15:67920224-67920521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.7086791992188 2 410.708337 819.40212 -0.15167 -6.2291E-05 0.95759 0.00039329 0.80592 0.000331 410.70870621168837 32.449 0.1925 32.32 32.245 32.437 -0.12915 13 8 3 0 0 0 0.79887 1 16904 16904 7.2892 2.5332 1 2096300 4628 15274 3025 3095 5423 5423 -0.014804544997900848 CKATQGGR 8 Unmodified _CKATQGGR_ 0 0 0 ENST00000558213.3_1_15:67920224-67920521:+|nuORF ENST00000558213.3_1_15:67920224-67920521:+|nuORF ENST00000558213.3_1_15:67920224-67920521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.7088623046875 2 410.708337 819.40212 -0.36801 -0.00015114 1.4755 0.000606 1.1075 0.00045486 410.7088854715752 35.385 0.19997 35.162 35.045 35.245 -0.2224 15 8 2 0 0 0 0.79887 1 18510 18510 7.2892 0.93513 1 3433500 4629 15274 3025 3095 5424 5424 -0.014804544997900848 CKDCERSFS 9 Unmodified _CKDCERSFS_ 0 0 0 nc|ENSG00000130684|Q9Y3M9-2|ZNF337;ENSG00000130684|ENST00000252979|ZNF337 nc|ENSG00000130684|Q9Y3M9-2|ZNF337 nc|ENSG00000130684|Q9Y3M9-2|ZNF337 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1504516601562 3 358.816281 1073.42701 0.60964 0.00021875 2.4726 0.0008872 3.0822 0.0011059 359.150964788381 54.077 0.32532 54.077 53.945 54.271 0 24 14 2 0 0 0 0.52067 1 30024 30024 3.8763 0 1 2766900 4630 4235 3026 3096 5425 5425 -0.1067618747938468 CKEAPRRSF 9 Unmodified _CKEAPRRSF_ 0 0 0 REV__ENST00000345042.6_1_2:198363538-198364916:-|nuORF REV__ENST00000345042.6_1_2:198363538-198364916:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2841796875 2 547.2822 1092.54985 0.38217 0.00020916 -1.3988 -0.00076554 -1.0166 -0.00055638 547.281389859963 85.556 0.65999 85.055 84.835 85.495 -0.5015 114 49 3 0 0 0 0.59218 1 47034 47034 1.8442 1.0506 1 16221000 + 4631 25751 3027 3097 5426 5426 0.007274370341974645 CKETSEMRAF 10 Unmodified _CKETSEMRAF_ 0 0 0 REV__nc|ENSG00000144642|Q6XE24-3|RBMS3 REV__nc|ENSG00000144642|Q6XE24-3|RBMS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.1826782226562 3 401.182853 1200.52673 0.29324 0.00011764 -1.3841 -0.00055528 -1.0909 -0.00043764 401.1819477575979 23.682 0.67602 20.855 20.537 21.213 -2.8273 95 40 3 0 0 0 0.70951 1 12681 12681 0.77653 0 1 15195000 + 4632 20721 3028 3098 5427 5427 -0.06551369865451306 CKFRPCFHL 9 Unmodified _CKFRPCFHL_ 0 0 0 ENST00000532085.1_1_11:118897545-118898521:-|nuORF ENST00000532085.1_1_11:118897545-118898521:-|nuORF ENST00000532085.1_1_11:118897545-118898521:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7874755859375 2 575.786064 1149.55758 -0.456 -0.00026256 1.5706 0.00090436 1.1146 0.0006418 575.7870796960133 28.068 0.26527 28.068 27.965 28.231 0 41 16 3 0 0 0 0.54444 1 14560 14560 4.756 1.1595 1 6821900 4633 14922 3029 3099 5428 5428 -0.011221269698580727 CKGCCCNFCCC 11 Unmodified _CKGCCCNFCCC_ 0 0 0 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 REV__nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.6587524414062 2 593.658589 1185.30262 NaN NaN NaN NaN NaN NaN NaN 75.483 1 75.005 74.505 75.505 -0.47714 0 0 0 0.9435 1 41321 41321 0 0 1 + 4634 18135 3030 3100 5429 5429 -0.2826150715022777 CKGLCHSDKC 10 Unmodified _CKGLCHSDKC_ 0 0 0 REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1 REV__nc|ENSG00000153936|Q7LGA3-2|HS2ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1576538085938 3 365.157762 1092.45146 NaN NaN NaN NaN NaN NaN NaN 91.564 1 91.564 91.064 92.064 0 0 0 0 1.0015 1 50636 50636 0.50596 0.10524 1 + 4635 29713 3031 3101 5430 5430 -0.09107250597526217 CKISNFLLIH 10 Unmodified _CKISNFLLIH_ 0 0 0 ENSG00000174600|ENST00000550402|CMKLR1;nc|ENSG00000174600|Q99788-2|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2704467773438 2 594.333901 1186.65325 0.20528 0.00012201 -1.1975 -0.00071171 -0.99221 -0.00058971 594.8348135583167 52.031 0.15035 51.973 51.854 52.005 -0.058918 9 6 2 0 0 0 0.23325 1 28122 28122 6.2058 0 1 890410 4636 8439 3032 3102 5431 5431 0.06738924422006676 CKKYCFPYF 9 Unmodified _CKKYCFPYF_ 0 0 0 ENSG00000251154|ENST00000509356|PTTG1IP2 ENSG00000251154|ENST00000509356|PTTG1IP2 ENSG00000251154|ENST00000509356|PTTG1IP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7747192382812 2 599.774831 1197.53511 -0.026667 -1.5994E-05 0.22984 0.00013785 0.20317 0.00012186 599.774937069935 80.473 0.32436 80.473 80.296 80.62 0 31 15 3 0 0 0 0.58466 2 44648 44648;44744 2.3027 0 1 739450 4637 10755 3033 3103 5432;5433 5432 -0.05575771158169118 CKLATTWLFV 10 Unmodified _CKLATTWLFV_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3240356445312 2 591.323002 1180.63145 1.833 0.0010839 -0.92392 -0.00054633 0.90907 0.00053755 591.3222922142021 93.883 0.27202 93.906 93.794 94.066 0.022987 22 10 3 0 0 0 0.57893 1 52198 52198 12.241 0 1 1451500 4638 1864 3034 3104 5434 5434 0.04836119673404937 CKLLRLDDLF 10 Unmodified _CKLLRLDDLF_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2;nc|ENSG00000076356|O75051-2|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 MSMS AL20221201_MKP_PDAC_01 4 412.5665893554688 3 412.565403 1234.67438 NaN NaN NaN NaN NaN NaN NaN 76.183 1 70.007 69.507 70.507 -6.1757 0 0 0 0.78298 1 49837 49837 7.9454 0 1 4639 1186 3035 3105 5435 5435 0.06642889730846946 CKNQARNMN 9 Unmodified _CKNQARNMN_ 0 0 0 REV__ENST00000581994.1_1_17:60107174-60107384:-|nuORF REV__ENST00000581994.1_1_17:60107174-60107384:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2006225585938 3 360.167537 1077.48078 -0.038099 -1.3722E-05 -1.3536 -0.00048751 -1.3917 -0.00050123 360.16699224140046 16.109 0.12254 16.114 16.043 16.166 0.0050564 14 8 2 0 0 0 0.21473 1 8041 8041 2.4985 0.59211 1 784780 + 4640 29072 3036 3106 5436 5436 -0.054859702569956426 CKNQARNMN 9 Unmodified _CKNQARNMN_ 0 0 0 REV__ENST00000581994.1_1_17:60107174-60107384:-|nuORF REV__ENST00000581994.1_1_17:60107174-60107384:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.167537 1077.48078 -0.59283 -0.00021352 -2.0218 -0.00072819 -2.6146 -0.00094171 360.1667448044116 15.95 0.11802 15.95 15.886 16.004 0 -0.081789 -0.00015364 NaN 2.4985 66 30 3 NaN NaN NaN NaN 0 NaN NaN 0 1851800 + 4641 29072 3036 3106 -0.054859702569956426 CKPFYYQHP 9 Unmodified _CKPFYYQHP_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7736206054688 2 591.773677 1181.5328 NaN NaN NaN NaN NaN NaN NaN 85.013 1 84.511 84.011 85.011 -0.5015 0 0 0 0.85798 1 46517 46517 0.52476 0.066424 1 4642 1582 3037 3107 5437 5437 -0.0507048357160329 CKRGGPAS 8 Unmodified _CKRGGPAS_ 0 0 0 REV__ENST00000519935.1_1_7:27209203-27211037:+|nuORF REV__ENST00000519935.1_1_7:27209203-27211037:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1972961425781 2 388.197605 774.380657 NaN NaN NaN NaN NaN NaN NaN 16.201 1 16.202 15.702 16.702 0.0010548 0 0 0 0.97444 1 7983 7983 0.69038 0 1 + 4643 28268 3038 3108 5438 5438 -0.015558395285097504 CKRHANLIY 9 Unmodified _CKRHANLIY_ 0 0 0 REV__ENSG00000163520|ENST00000404922|FBLN2 REV__ENSG00000163520|ENST00000404922|FBLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8026123046875 2 559.300393 1116.58623 0.60034 0.00033577 0.79739 0.00044598 1.3977 0.00078175 559.3006864014839 93.43 0.73349 92.973 92.599 93.333 -0.4574 61 32 2 0 0 0 0.58865 1 51215 51215 2.0598 1.2661 1 752690 + 4644 21777 3039 3109 5439 5439 0.032603139309230755 CKRLQMLINLL 11 Unmodified _CKRLQMLINLL_ 0 0 0 REV__nc|ENSG00000102038|P28370-2|SMARCA1 REV__nc|ENSG00000102038|P28370-2|SMARCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.8988647460938 2 672.896343 1343.77813 2.8481 0.0019165 -0.74226 -0.00049946 2.1059 0.001417 672.8956871221444 96.944 0.31429 96.937 96.724 97.038 -0.007019 34 11 4 0 0 0 0.39949 1 53799 53799 21.537 21.537 1 23992000 + 4645 18217 3040 3110 5440 5440 0.11999473566902452 CKRRCYYL 8 Unmodified _CKRRCYYL_ 0 0 0 REV__ENSG00000148468|ENST00000378116|FAM171A1 REV__ENSG00000148468|ENST00000378116|FAM171A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7105102539062 2 552.775696 1103.53684 0.76354 0.00042207 1.678 0.00092754 2.4415 0.0013496 552.7772578750098 46.884 0.2198 46.547 46.404 46.624 -0.33664 18 10 2 0 0 0 8.7369 1 25087 25087 14.582 0 1 2695300 + 4646 20954 3041 3111 5441 5441 -0.010787173495373281 CKRWIWHF 8 Unmodified _CKRWIWHF_ 0 0 0 REV__nc|ENSG00000226278|O15172|PSPHP1 REV__nc|ENSG00000226278|O15172|PSPHP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5362243652344 3 392.535889 1174.58584 -0.42581 -0.00016715 2.343 0.00091972 1.9172 0.00075257 392.53681962735726 19.823 0.1199 19.852 19.801 19.921 0.028357 9 6 2 0 0 0 0.80676 1 10027 10027 1.6526 0.17072 1 312650 + 4647 29952 3042 3112 5442 5442 0.0055293900170454435 CKRWIWHF 8 Unmodified _CKRWIWHF_ 0 0 0 REV__nc|ENSG00000226278|O15172|PSPHP1 REV__nc|ENSG00000226278|O15172|PSPHP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.535889 1174.58584 -0.42581 -0.00016715 2.343 0.00091972 1.9172 0.00075257 392.53681962735726 19.823 0.1199 19.852 19.801 19.921 0.028357 0 0 NaN 1.6526 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 312650 + 4648 29952 3042 3112 0.0055293900170454435 CKSREDCALF 10 Unmodified _CKSREDCALF_ 0 0 0 nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2645263671875 2 586.265358 1170.51616 0.80753 0.00047343 -0.73555 -0.00043123 0.071986 4.2203E-05 586.2652730626611 42.408 0.27361 37.724 37.559 37.832 -4.6846 25 17 2 0 0 0 0.54684 1 25646 25646 13.906 1.3745 1 10768000 4649 16143 3043 3113 5443 5443 -0.062273525198861535 CKYRKERT 8 Unmodified _CKYRKERT_ 0 0 0 REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8621215820312 3 361.862442 1082.5655 NaN NaN NaN NaN NaN NaN NaN 93.363 1 93.363 92.863 93.863 0 0 0 0 0.97444 1 51619 51619 0.40072 0 1 + 4650 26961 3044 3114 5444 5444 0.027517235512505067 CLAADVPLI 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LAADVPLI_ C(1)LAADVPLI C(67)LAADVPLI 0 1 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2663879394531 2 486.265153 970.515753 1.1498 0.00055911 1.7636 0.00085759 2.9134 0.0014167 486.26639149730596 88.95 0.56087 82.775 82.551 83.112 -6.1757 56 31 3 0 0 0 0.016494 1 58720 58720 67.035 38.548 1 10348000 4651 3940 3045 3115 5445 5445 395 0.029315958225879513 CLADELINA 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LADELINA_ C(1)LADELINA C(61)LADELINA 0 1 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000599232.1_1_19:58905872-58905992:+|nuORF;ENST00000414617.1_1_21:34853889-34854420:-|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7472229003906 2 509.747324 1017.4801 0.56052 0.00028572 -0.0094639 -4.8242E-06 0.55106 0.0002809 509.74741523737686 69.599 0.61382 63.424 63.071 63.685 -6.1757 100 32 4 0 0 0 0.022193 3 45556 45314;45435;45556 61.357 24.851 1 246930000 4652 1377 3046 3116 5446;5447;5448 5448 126 -0.027944864250684986 CLADHLLTA 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LADHLLTA_ C(1)LADHLLTA C(67)LADHLLTA 0 1 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000527160.1_1_11:614111-614513:-|nuORF;ENST00000532096.1_1_11:614111-615490:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2577819824219 2 507.257859 1012.50117 0.67961 0.00034474 -0.19682 -9.9841E-05 0.48279 0.0002449 507.2575888656873 56.927 0.79076 50.95 50.703 51.494 -5.9769 74 45 2 0 0 0 0.016184 1 36474 36474 67.344 29.37 1 214340000 4653 9379 3047 3117 5449 5449 873 -0.004584763255593316 CLADYLVPIL 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))LADYLVPIL_ C(1)LADYLVPIL C(57)LADYLVPIL 0 1 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8223266601562 2 588.820292 1175.62603 0.63627 0.00037465 2.5907 0.0015254 3.2269 0.0019001 589.3236431728424 101.68 0.17934 95.501 95.395 95.574 -6.1757 13 9 2 0 0 0 0.051739 1 68210 68210 57.471 28.39 1 67387000 4654 8000 3048 3118 5450 5450 781 0.04524396090960181 CLCCGCEV 8 Unmodified _CLCCGCEV_ 0 0 0 ENST00000524670.5_1_11:118869052-118882689:+|nuORF;ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC ENST00000524670.5_1_11:118869052-118882689:+|nuORF ENST00000524670.5_1_11:118869052-118882689:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.1383972167969 2 415.139195 828.263837 NaN NaN NaN NaN NaN NaN NaN 94.625 1 88.449 87.949 88.949 -6.1757 0 0 0 0.97444 1 62674 62674 2.5775 1.8871 1 4655 14782 3049 3119 5451 5451 -0.1571640512643171 CLCGTSVAM 9 2 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))GTSVAM(Oxidation (M))_ C(1)LC(1)GTSVAM CLCGTSVAM(1) C(50)LC(50)GTSVAM CLCGTSVAM(50) 0 2 1 ENSG00000145287|ENST00000311507|PLAC8 ENSG00000145287|ENST00000311507|PLAC8 ENSG00000145287|ENST00000311507|PLAC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7063293457031 2 507.706288 1013.39802 0.67896 0.00034471 -1.1873 -0.00060279 -0.50833 -0.00025808 507.70631759364153 31.94 0.39389 28.245 28.051 28.445 -3.6958 48 21 3 0 0 0 0.040472 1 18188 18188 49.669 37.137 1 29087000 4656 5681 3050 3120 5452 5452 579;580 1035 -0.10814048100019136 CLCGTSVAM 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))GTSVAM_ C(1)LC(1)GTSVAM C(71)LC(71)GTSVAM 0 2 0 ENSG00000145287|ENST00000311507|PLAC8 ENSG00000145287|ENST00000311507|PLAC8 ENSG00000145287|ENST00000311507|PLAC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.4110107421875 1 998.410384 997.403108 0.55024 0.00054936 -1.9938 -0.0019907 -1.4436 -0.0014413 998.4095517955085 48.918 0.21687 43.522 43.371 43.588 -5.3961 14 12 2 0 0 0 0.013472 1 30494 30494 70.716 47.567 1 12800000 4657 5681 3050 3121 5453 5453 579;580 -0.09569744237410305 CLCNYRYYGCW 11 Unmodified _CLCNYRYYGCW_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1443.570922851562 1 1443.56426 1442.55698 0.61191 0.00088333 0.081761 0.00011803 0.69367 0.0010014 1443.5658138591448 69.797 0.10448 63.622 63.544 63.648 -6.1757 6 5 2 0 0 0 0.74157 1 45574 45574 0.35063 0 1 25455000 + 4658 29266 3051 3122 5454 5454 -0.1465933447191219 CLCRLLTTI 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))LC(Carbamidomethyl (C))RLLTTI_ C(1)LC(1)RLLTTI C(42)LC(42)RLLTTI 0 2 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3106689453125 2 575.309569 1148.60458 1.1149 0.0006414 -1.0835 -0.00062332 0.031417 1.8075E-05 575.3105286296735 87.153 0.89198 80.977 80.434 81.326 -6.1757 133 48 4 0 0 0 0.062454 1 57412 57412 41.956 9.6501 1 57575000 4659 3070;16132;1143 3052 3123 5455 5455 99;100 0.03622687790607415 CLDKSVIEL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LDKSVIEL_ C(1)LDKSVIEL C(93)LDKSVIEL 0 1 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7868041992188 2 538.78645 1075.55835 0.97846 0.00052718 0.17738 9.5567E-05 1.1558 0.00062275 538.7865523314462 61.082 0.58376 54.934 54.552 55.136 -6.1478 46 30 2 0 0 0 0.0082475 2 39274 39274;39406 103.35 41.024 1 85524000 4660 2097 3053 3124 5456;5457 5456 207 0.023589461601659423 CLEPPPKL 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))LEPPPKL_ C(1)LEPPPKL C(44)LEPPPKL 0 1 0 REV__nc|ENSG00000132305|Q16891-3|IMMT REV__nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2608642578125 2 477.259871 952.505189 0.40877 0.00019509 0.69922 0.00033371 1.108 0.0005288 477.26021147713044 40.246 0.40507 35.716 35.529 35.934 -4.5294 54 32 2 0 0 0 0.40602 1 24089 24089 43.858 13.222 1 18616000 + 4661 19839 3054 3125 5458 5458 1039 0.027036131681711595 CLFESFWCRYV 11 Unmodified _CLFESFWCRYV_ 0 0 0 REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 726.8257446289062 2 726.825583 1451.63661 NaN NaN NaN NaN NaN NaN NaN 74.507 1 74.507 74.007 75.007 0 0 0 0 0.94307 1 41458 41458 0.30703 0 1 + 4662 25825 3055 3126 5459 5459 -0.0711394452625882 CLFIHSSNMHF 11 Unmodified _CLFIHSSNMHF_ 0 0 0 ENST00000463491.1_1_20:35457204-35467793:-|nuORF ENST00000463491.1_1_20:35457204-35467793:-|nuORF ENST00000463491.1_1_20:35457204-35467793:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.3042602539062 2 668.302275 1334.59 NaN NaN NaN NaN NaN NaN NaN 77.953 1 77.953 77.453 78.453 0 0 0 0 0.94165 1 43330 43330 1.3295 0 1 4663 13695 3056 3127 5460 5460 -0.06391384357539209 CLFLVWFGF 9 Unmodified _CLFLVWFGF_ 0 0 0 AluSp_dup12528|chr4:108625371-108625684:-|1.2322493653750737|0.0295741133308953|5.38|179.0|19|3|anti-sense AluSp_dup12528|chr4:108625371-108625684:-|1.2322493653750737|0.0295741133308953|5.38|179.0|19|3|anti-sense AluSp_dup12528|chr4:108625371-108625684:-|1.2322493653750737|0.0295741133308953|5.38|179.0|19|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8597717285156 3 377.86138 1130.56231 NaN NaN NaN NaN NaN NaN NaN 24.821 1 24.821 24.321 25.321 0 0 0 0 0.83812 1 12698 12698 2.9952 1.7804 1 4664 21 3057 3128 5461 5461 0.002250804445338872 CLGPVTRLPTF 11 Unmodified _CLGPVTRLPTF_ 0 0 0 REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1 REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3310546875 2 602.331359 1202.64816 0.82923 0.00049947 3.9314 0.002368 4.7606 0.0028675 602.3300000426424 98.359 0.1948 92.183 92.072 92.267 -6.1757 24 12 3 0 0 0 0.33405 1 65246 65246 24.991 0.97039 1 25425000 + 4665 29831 3058 3129 5462 5462 0.054946205593751074 CLHCLYSCHW 10 Unmodified _CLHCLYSCHW_ 0 0 0 nc|ENSG00000130055|Q9HCC8-3|GDPD2;ENSG00000130055|ENST00000374382|GDPD2 nc|ENSG00000130055|Q9HCC8-3|GDPD2 nc|ENSG00000130055|Q9HCC8-3|GDPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.1734619140625 3 422.173523 1263.49874 0.81131 0.00034251 -1.2731 -0.00053745 -0.46174 -0.00019494 422.17296681768704 80.946 0.42319 81.006 80.814 81.237 0.059929 35 16 3 0 0 0 0.7191 1 44779 44779 0.77653 0.14971 1 3027100 4666 4177 3059 3130 5463 5463 -0.12246971326521816 CLHSELSPK 9 Unmodified _CLHSELSPK_ 0 0 0 ENST00000379477.5_1_13:41835935-41837507:-|nuORF;ENST00000498245.1_1_13:41835952-41837531:-|nuORF ENST00000379477.5_1_13:41835935-41837507:-|nuORF ENST00000379477.5_1_13:41835935-41837507:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7241821289062 2 507.257859 1012.50117 0.4072 0.00020656 -0.28662 -0.00014539 0.12059 6.117E-05 507.25740091274116 50.414 0.21014 50.414 50.308 50.518 0 13 9 2 0 0 0 0.18521 1 27811 27811 16.942 0 1 1146500 4667 12569 3060 3131 5464 5464 -0.004584763255479629 CLIESLASSF 10 Unmodified _CLIESLASSF_ 0 0 0 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.1786499023438 3 357.179326 1068.51615 -0.31942 -0.00011409 -1.3597 -0.00048567 -1.6791 -0.00059976 357.17870222447107 34.774 0.28257 34.582 34.46 34.742 -0.19131 21 12 3 0 0 0 0.69064 1 18189 18189 1.9064 0.45126 1 2005400 + 4668 19300 3061 3132 5465 5465 -0.015370292482202785 CLIESLASSF 10 Unmodified _CLIESLASSF_ 0 0 0 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 357.179326 1068.51615 -0.31942 -0.00011409 -1.3597 -0.00048567 -1.6791 -0.00059976 357.17870222447107 34.774 0.28257 34.582 34.46 34.742 -0.19131 -0.01692 8.1502E-05 NaN 1.9064 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2005400 + 4669 19300 3061 3132 -0.015370292482202785 CLIESLASSF 10 Unmodified _CLIESLASSF_ 0 0 0 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 REV__nc|ENSG00000121644|Q9BSY9-2|DESI2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.179326 1068.51615 -0.0023602 -8.4302E-07 -1.5693 -0.00056053 -1.5717 -0.00056137 357.1787843218326 34.589 0.21215 34.616 34.456 34.668 0.027401 0.01692 -0.00014308 NaN 1.9064 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1372300 + 4670 19300 3061 3132 -0.015370292482202785 CLIGDHLLL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LIGDHLLL_ C(1)LIGDHLLL C(120)LIGDHLLL 0 1 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2926025390625 2 527.291702 1052.56885 1.1586 0.00061094 0.98853 0.00052124 2.1472 0.0011322 527.2924890990114 94.04 0.57969 87.864 87.555 88.135 -6.1757 53 33 2 0 0 0 0.0048787 2 62191 62191;62312 117.6 28.172 1 15405000 4671 16188 3062 3133 5466;5467 5466 1016 0.044669736052583175 CLIKEVDIYTV 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))LIKEVDIYTV_ C(1)LIKEVDIYTV C(130)LIKEVDIYTV 0 1 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8 nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.3605346679688 2 676.860146 1351.70574 0.47769 0.00032333 0.057754 3.9092E-05 0.53545 0.00036242 676.8602742298946 82.38 0.57043 76.204 75.951 76.521 -6.1757 58 31 3 0 0 0 7.4113E-15 3 54141 54018;54141;54278 132.38 84.785 1 13731000 4672 3948 3063 3134 5468;5469;5470 5469 398 0.043954179742968336 CLILWKWK 8 Unmodified _CLILWKWK_ 0 0 0 nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86;nc|ENSG00000114013|P42081-2|CD86;nc|ENSG00000114013|P42081-5|CD86 nc|ENSG00000114013|P42081-6|CD86 nc|ENSG00000114013|P42081-6|CD86 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3161010742188 2 545.317523 1088.62049 NaN NaN NaN NaN NaN NaN NaN 77.837 1 77.837 77.337 78.337 0 0 0 0 0.97444 1 43269 43269 0 0 1 4673 3012 3064 3135 5471 5471 0.0797276208979838 CLKAACSL 8 Unmodified _CLKAACSL_ 0 0 0 SVA_D_dup1229|chr17:30522805-30524227:+|1.1061942754633736|0.476847412502663|1.21|179.0|21|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.1061942754633736|0.476847412502663|1.21|179.0|21|2|sense SVA_D_dup1229|chr17:30522805-30524227:+|1.1061942754633736|0.476847412502663|1.21|179.0|21|2|sense MSMS AL20221201_MKP_PDAC_01 4 404.7082214355469 2 404.706417 807.398281 NaN NaN NaN NaN NaN NaN NaN 35.717 1 31.524 31.024 32.024 -4.1928 0 0 0 0.97444 1 20759 20759 2.5775 0 1 4674 30178 3065 3136 5472 5472 -0.01312260317865821 CLKAIVFFDPD 11 Unmodified _CLKAIVFFDPD_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G nc|ENSG00000164749|Q14541|HNF4G nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2179870605469 3 423.217892 1266.63185 -0.44931 -0.00019016 0.84519 0.0003577 0.39588 0.00016754 423.21831383150436 19.873 0.17313 19.902 19.801 19.974 0.028357 16 9 2 0 0 0 0.71618 1 10030 10030 1.1098 0.26481 1 697770 4675 7240 3066 3137 5473 5473 0.009194946026582329 CLKCFYIYF 9 Unmodified _CLKCFYIYF_ 0 0 0 REV__ENST00000555683.1_1_14:35005207-35008876:-|nuORF REV__ENST00000555683.1_1_14:35005207-35008876:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2862548828125 2 600.285031 1198.55551 -0.034721 -2.0843E-05 0.62731 0.00037657 0.59259 0.00035572 600.2853365190097 83.396 0.39072 83.396 83.202 83.593 0 33 18 2 0 0 0 0.54444 2 46301 46199;46301 4.756 0.42677 1 686600 + 4676 28771 3067 3138 5474;5475 5475 -0.03582600498339161 CLKCFYIYF 9 Unmodified _CLKCFYIYF_ 0 0 0 REV__ENST00000555683.1_1_14:35005207-35008876:-|nuORF REV__ENST00000555683.1_1_14:35005207-35008876:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2852783203125 2 600.285031 1198.55551 -0.035625 -2.1385E-05 0.35327 0.00021207 0.31765 0.00019068 600.7865131722781 86.317 0.33518 86.317 86.137 86.472 0 23 16 2 0 0 0 0.58466 1 47793 47793 2.3027 0 1 413210 + 4677 28771 3067 3138 5476 5476 -0.03582600498339161 CLKCQIWVPLF 11 Unmodified _CLKCQIWVPLF_ 0 0 0 ENST00000382275.5_1_5:19721557-19747203:-|nuORF ENST00000382275.5_1_5:19721557-19747203:-|nuORF ENST00000382275.5_1_5:19721557-19747203:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 675.3599853515625 2 675.359062 1348.70357 NaN NaN NaN NaN NaN NaN NaN 96.569 1 90.393 89.893 90.893 -6.1757 0 0 0 0.85601 1 63998 63998 9.3831 1.2276 1 4678 12628 3068 3139 5477 5477 0.04316710755483655 CLKNVFSVL 9 Unmodified _CLKNVFSVL_ 0 0 0 ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1 ENSG00000065600|ENST00000261455|PACC1 ENSG00000065600|ENST00000261455|PACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7877502441406 2 511.788795 1021.56304 0.87152 0.00044604 -1.3854 -0.00070903 -0.51388 -0.000263 511.7870947683103 90.928 1.9842 84.752 83.702 85.686 -6.1757 356 114 5 0 0 0 0.042911 4 59780 59780;60043;60174;60303 48.346 13.616 1 120750000 4679 910 3069 3140 5478;5479;5480;5481 5478 0.0531187509358233 CLLAFQLFFV 10 Unmodified _CLLAFQLFFV_ 0 0 0 ENST00000259467.8_1_9:125582222-125582330:-|nuORF ENST00000259467.8_1_9:125582222-125582330:-|nuORF ENST00000259467.8_1_9:125582222-125582330:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8890380859375 3 400.887706 1199.64129 NaN NaN NaN NaN NaN NaN NaN 16.15 1 16.151 15.651 16.651 0.0010548 0 0 0 1.0019 1 7957 7957 0.15932 0 1 4680 11215 3070 3141 5482 5482 0.049453076788267936 CLLAHAVSL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLAHAVSL_ C(1)LLAHAVSL C(71)LLAHAVSL 0 1 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2716674804688 2 492.27077 982.526987 1.6564 0.00081539 0.044688 2.1999E-05 1.7011 0.00083738 492.2709452188127 62.478 0.57979 56.303 56.073 56.653 -6.1757 71 30 3 0 0 0 0.013472 2 40357 40228;40357 70.716 30.758 1 101370000 4681 481 3071 3142 5483;5484 5484 31 0.03502417916729428 CLLDGVPVAL 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLDGVPVAL_ C(1)LLDGVPVAL C(55)LLDGVPVAL 0 1 0 ENSG00000151414|ENST00000367385|NEK7;nc|ENSG00000151414|Q8TDX7-2|NEK7 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 MSMS AL20221201_MKP_PDAC_01 4 528.7905883789062 2 528.791535 1055.56852 NaN NaN NaN NaN NaN NaN NaN 99.365 1 93.189 92.689 93.689 -6.1757 0 0 0 0.060005 1 66150 66150 54.774 29.374 1 4682 6111 3072 3143 5485 5485 607 0.04295553885413028 CLLEAALLTL 10 Unmodified _CLLEAALLTL_ 0 0 0 REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3126220703125 2 530.309561 1058.60457 3.1568 0.0016741 0.72462 0.00038427 3.8815 0.0020584 530.3098624362956 99.653 0.19374 99.617 99.529 99.723 -0.036308 16 6 3 0 0 0 0.66569 1 55364 55364 6.7232 1.9672 1 4453100 + 4683 28931 3073 3144 5486 5486 0.07761011062257239 CLLEAALLTL 10 Unmodified _CLLEAALLTL_ 0 0 0 REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 530.309561 1058.60457 0.26496 0.00014051 1.5554 0.00082482 1.8203 0.00096534 530.3101340797846 99.841 0.11584 99.683 99.613 99.728 -0.1575 0.033272 0.00036684 NaN 6.7232 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1054200 + 4684 28931 3073 3144 0.07761011062257239 CLLEAALLTL 10 Unmodified _CLLEAALLTL_ 0 0 0 REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF REV__ENST00000567629.1_1_16:84494344-84495607:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.309561 1058.60457 3.1568 0.0016741 0.72462 0.00038427 3.8815 0.0020584 530.3098624362956 99.653 0.19374 99.617 99.529 99.723 -0.036308 -0.033272 -0.00051427 NaN 6.7232 16 6 3 NaN NaN NaN NaN 0 NaN NaN 0 4453100 + 4685 28931 3073 3144 0.07761011062257239 CLLPHVVPG 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LLPHVVPG_ C(1)LLPHVVPG C(67)LLPHVVPG 0 1 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2745361328125 2 496.273312 990.532072 1.1768 0.000584 -1.0122 -0.00050234 0.16455 8.1662E-05 496.27264512010817 60.988 0.3877 54.84 54.667 55.055 -6.1478 44 20 3 0 0 0 0.016115 2 39364 39229;39364 67.413 30.947 1 47154000 4686 5669 3074 3145 5487;5488 5488 575 0.03642721779363001 CLLSHPNQTL 10 Unmodified _CLLSHPNQTL_ 0 0 0 REV__nc|ENSG00000162897|Q8WWV6-5|FCAMR REV__nc|ENSG00000162897|Q8WWV6-5|FCAMR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8623352050781 3 375.862219 1124.56483 NaN NaN NaN NaN NaN NaN NaN 36.493 1 36.514 36.014 37.014 0.021545 0 0 0 0.91523 1 19336 19336 3.8763 0 1 + 4687 29740 3075 3146 5489 5489 0.007528841115345131 CLLWHRLKL 9 Unmodified _CLLWHRLKL_ 0 0 0 BRINP2|p.R746W|1|0.24|ENSG00000198797|chr1:177281412-177281412|C/T|missense_variant BRINP2|p.R746W|1|0.24|ENSG00000198797|chr1:177281412-177281412|C/T|missense_variant BRINP2|p.R746W|1|0.24|ENSG00000198797|chr1:177281412-177281412|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.570556640625 3 394.570711 1180.6903 NaN NaN NaN NaN NaN NaN NaN 33.436 1 33.276 32.776 33.776 -0.15918 0 0 0 0.82739 1 17439 17439 2.4985 0.84587 1 4688 46 3076 3147 5490 5490 0.1071864075843223 CLNDQTFKAR 10 Unmodified _CLNDQTFKAR_ 0 0 0 REV__ENSG00000163060|ENST00000295201|TEKT4 REV__ENSG00000163060|ENST00000295201|TEKT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2009887695312 3 399.201124 1194.58154 0.31285 0.00012489 0.53219 0.00021245 0.84503 0.00033734 399.2014231182393 26.18 0.30927 23.229 23.112 23.422 -2.9511 31 17 2 0 0 0 0.64628 1 14360 14360 5.0475 0 1 12424000 + 4689 21721 3077 3148 5491 5491 -0.00796615002514045 CLNLDYSFDF 10 Unmodified _CLNLDYSFDF_ 0 0 0 REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.7654418945312 2 618.765714 1235.51688 0.097114 6.0091E-05 0.056209 3.478E-05 0.15332 9.4871E-05 618.7656681550293 71.686 0.27124 71.686 71.505 71.776 0 29 11 3 0 0 0 0.62068 1 39881 39881 10.074 3.3508 1 1782600 + 4690 20981 3078 3149 5492 5492 -0.09146234599165837 CLNLDYSFDF 10 Unmodified _CLNLDYSFDF_ 0 0 0 REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF REV__ENST00000528996.1_1_11:57374185-57382051:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.7657470703125 2 618.765714 1235.51688 -0.39362 -0.00024356 0.28515 0.00017644 -0.10846 -6.7114E-05 618.7660502131305 77.279 0.39864 76.797 76.537 76.935 -0.4826 43 17 3 0 0 0 0.62068 1 42318 42318 10.074 0.6908 1 1292900 + 4691 20981 3078 3149 5493 5493 -0.09146234599165837 CLQFTLNMTE 10 Unmodified _CLQFTLNMTE_ 0 0 0 ENSG00000205683|ENST00000556509|DPF3 ENSG00000205683|ENST00000556509|DPF3 ENSG00000205683|ENST00000556509|DPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5199584960938 3 400.519353 1198.53623 0.027142 1.0871E-05 1.1955 0.00047881 1.2226 0.00048968 400.519738710163 31.286 0.2658 31.286 31.152 31.418 0 29 12 3 0 0 0 0.63399 1 16261 16261 5.4027 2.9679 1 2773700 4692 10377 3079 3150 5494 5494 -0.055096015798881126 CLRARNGLSS 10 Unmodified _CLRARNGLSS_ 0 0 0 REV__AluSz6_dup43940|chr19:17814301-17814610:-|2.045573920306524|0.3287952390102888|2.64|177.0|9|2|sense REV__AluSz6_dup43940|chr19:17814301-17814610:-|2.045573920306524|0.3287952390102888|2.64|177.0|9|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7857055664062 2 538.785107 1075.55566 NaN NaN NaN NaN NaN NaN NaN 38.418 1 38.418 37.918 38.918 0 0 0 0 0.57227 1 20519 20519 22.736 2.2827 1 + 4693 16722 3080 3151 5495 5495 0.020905355458808117 CLSSANSLYDD 11 Unmodified _CLSSANSLYDD_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2477416992188 2 594.247886 1186.48122 0.38417 0.00022829 0.17377 0.00010326 0.55794 0.00033155 594.2475213411783 49.306 0.15822 49.306 49.215 49.373 0 18 7 3 0 0 0 0.5229 1 27110 27110 15.248 1.3424 1 21436000 4694 9379 3081 3152 5496 5496 -0.10456316846807567 CLVVDEAHRL 10 Unmodified _CLVVDEAHRL_ 0 0 0 nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000116254|ENST00000262450|CHD5 nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8734436035156 3 385.537736 1153.59138 1.6018 0.00061755 0.75124 0.00028963 2.353 0.00090718 385.8726344088314 94.42 0.5666 88.244 87.96 88.527 -6.1757 51 32 2 0 0 0 0.63399 1 62611 62611 8.4443 0.28878 1 5337300 4695 7938 3082 3153 5497 5497 0.020725730028743783 CLWAQIQKL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LWAQIQKL_ C(1)LWAQIQKL C(110)LWAQIQKL 0 1 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 580.3193969726562 2 580.318251 1158.62195 NaN NaN NaN NaN NaN NaN NaN 87.172 1 80.996 80.496 81.496 -6.1757 0 0 0 0.019979 1 57474 57474 112.59 72.636 1 4696 4885 3083 3154 5498 5498 503 0.04898351387896582 CLWGLALPL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LWGLALPL_ C(1)LWGLALPL C(56)LWGLALPL 0 1 0 ENSG00000176945|ENST00000447234|MUC20;ENST00000485430.1_1_3:195447878-195449661:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.791015625 2 521.791338 1041.56812 0.78496 0.00040959 -0.52593 -0.00027442 0.25903 0.00013516 521.7909508925032 101.9 0.076431 95.726 95.68 95.757 -6.1757 7 3 3 0 0 0 0.028712 1 68406 68406 56.048 6.3794 1 13855000 4697 8636 3084 3155 5499 5499 826 0.04900178956177115 CLWLRFPDY 9 Unmodified _CLWLRFPDY_ 0 0 0 REV__ENSG00000197943|ENST00000564138|PLCG2 REV__ENSG00000197943|ENST00000564138|PLCG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5312805175781 3 404.867193 1211.57975 NaN NaN NaN NaN NaN NaN NaN 16.84 1 16.84 16.34 17.34 0 0 0 0 0.84564 1 8251 8251 1.0715 0 1 + 4698 23971 3085 3156 5500 5500 -0.017576240204562055 CLWTEEEPGSP 11 Unmodified _CLWTEEEPGSP_ 0 0 0 ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 624.268310546875 2 624.266078 1246.5176 NaN NaN NaN NaN NaN NaN NaN 32.172 1 28.315 27.815 28.815 -3.8562 0 0 0 0.85892 1 18299 18299 11.495 3.3392 1 4699 14406 3086 3157 5501 5501 -0.09579439950107371 CLWWSMRNH 9 Unmodified _CLWWSMRNH_ 0 0 0 REV__ENST00000453636.1_1_2:139370257-139370545:+|nuORF REV__ENST00000453636.1_1_2:139370257-139370545:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3079833984375 2 616.776228 1231.5379 0.3463 0.00021359 0.40525 0.00024995 0.75155 0.00046354 616.7761428366769 76.262 0.20087 75.782 75.684 75.885 -0.47945 12 7 2 0 0 0 0.21819 1 41698 41698 2.0598 0 1 430970 + 4700 27232 3087 3158 5502 5502 -0.06860502980612182 CLYELPENIRV 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))LYELPENIRV_ C(1)LYELPENIRV C(72)LYELPENIRV 0 1 0 ENSG00000136819|ENST00000372447|C9orf78;ENST00000461762.5_1_9:132591268-132595829:-|nuORF ENSG00000136819|ENST00000372447|C9orf78 ENSG00000136819|ENST00000372447|C9orf78 MULTI-MSMS AL20221201_MKP_PDAC_01 4 703.863037109375 2 703.360844 1404.70714 0.7816 0.00054974 -0.3317 -0.0002333 0.4499 0.00031644 703.3603182986217 79.867 0.48952 73.691 73.435 73.924 -6.1757 47 29 2 0 0 0 0.0071133 2 52281 52281;52420 71.708 51.293 1 19496000 4701 4860 3088 3159 5503;5504 5503 500 0.020970520630498868 CLYGNVEKV 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))LYGNVEKV_ C(1)LYGNVEKV C(89)LYGNVEKV 0 1 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2704467773438 2 541.270967 1080.52738 0.54665 0.00029589 -0.069079 -3.739E-05 0.47757 0.0002585 541.2708261517722 42.154 0.42918 37.47 37.234 37.663 -4.6846 49 26 2 0 0 0 0.0086209 2 25314 25314;25450 89.401 53.274 1 59991000 4702 2240 3089 3160 5505;5506 5505 222 -0.009662071540560646 CLYITCFLITF 11 Unmodified _CLYITCFLITF_ 0 0 0 REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.8397827148438 2 668.837628 1335.6607 0.8053 0.00053862 4.2682 0.0028547 5.0735 0.0033933 669.3427336235371 102.44 0.07988 96.263 96.218 96.298 -6.1757 15 9 2 0 0 0 0.37677 1 68742 68742 22.736 7.4878 1 4241300 + 4703 28452 3090 3161 5507 5507 0.0062989590740016865 CLYPQRYEQRF 11 Unmodified _CLYPQRYEQRF_ 0 0 0 REV__nc|ENSG00000122008|Q9UBT6-3|POLK REV__nc|ENSG00000122008|Q9UBT6-3|POLK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.4346313476562 4 376.435681 1501.71362 -0.61753 -0.00023246 -1.823 -0.00068624 -2.4405 -0.0009187 376.43510622266075 15.773 0.07312 15.773 15.741 15.814 0 22 14 2 0 0 0 0.73237 1 7629 7629 1.2148 0.76031 1 882840 + 4704 19322 3091 3162 5508 5508 -0.017170099855775334 CMCIQERNVLF 11 Unmodified _CMCIQERNVLF_ 0 0 0 REV__ENST00000527493.5_1_11:89892410-89896902:+|nuORF REV__ENST00000527493.5_1_11:89892410-89896902:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.3182373046875 2 678.317068 1354.61958 1.9789 0.0013423 -0.83775 -0.00056826 1.1411 0.00077404 678.3165311060693 93.033 0.37269 93.056 92.897 93.27 0.022987 39 14 4 0 0 0 0.58219 2 51704 51704;51800 12.241 3.4953 1 5362400 + 4705 28391 3092 3163 5509;5510 5509 -0.043541884037267664 CMCSMPWFFLW 11 Unmodified _CMCSMPWFFLW_ 0 0 0 ENST00000342922.8_1_11:47290950-47291097:+|nuORF ENST00000342922.8_1_11:47290950-47291097:+|nuORF ENST00000342922.8_1_11:47290950-47291097:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.5335693359375 3 484.198681 1449.57421 0.53042 0.00025683 -0.74124 -0.00035891 -0.21082 -0.00010208 484.1984740308111 50.775 0.51892 50.775 50.477 50.996 0 159 28 7 0 0 0 0.73114 2 27985 27985;28006 1.3296 0.92138 1 492040000 4706 11988 3093 3164 5511;5512 5511 -0.13259130190454016 CMDTRTYTW 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))M(Oxidation (M))DTRTYTW_ C(1)MDTRTYTW CM(1)DTRTYTW C(72)MDTRTYTW CM(72)DTRTYTW 0 1 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2528076171875 2 625.252448 1248.49034 0.031848 1.9913E-05 -0.71562 -0.00044744 -0.68377 -0.00042753 625.252203871675 39.959 0.34223 35.43 35.216 35.558 -4.5294 39 26 2 0 0 0 0.013118 1 23724 23724 71.708 31.751 1 20091000 4707 8367 3094 3165 5513 5513 805 1416 -0.12396246762159535 CMDTRTYTW 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))MDTRTYTW_ C(1)MDTRTYTW C(130)MDTRTYTW 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.2553100585938 2 617.254991 1232.49543 0.47537 0.00029343 -0.73917 -0.00045626 -0.2638 -0.00016283 617.2549194996982 48.055 0.40232 42.821 42.616 43.018 -5.2339 61 24 3 0 0 0 0.0019086 2 29954 29817;29954 133.05 85.49 1 32119000 4708 8367 3094 3166 5514;5515 5515 805 -0.11151942899550704 CMESDWCRDS 10 Unmodified _CMESDWCRDS_ 0 0 0 nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7|PLEKHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.4780883789062 3 411.144069 1230.41038 -0.99849 -0.00041052 -0.10086 -4.1469E-05 -1.0994 -0.00045199 411.14399611142466 32.836 0.27265 32.836 32.695 32.968 0 26 13 2 0 0 0 0.71123 1 17150 17150 0.69767 0.1345 1 3987400 4709 16260 3095 3167 5516 5516 -0.19561056427642143 CMEYYFPY 8 Unmodified _CMEYYFPY_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2129516601562 2 558.214272 1114.41399 -0.34057 -0.00019011 -1.3473 -0.00075209 -1.6879 -0.0009422 558.7149843451099 30.079 0.47586 30.079 29.867 30.343 0 47 22 3 0 0 0 0.80624 1 15531 15531 2.8892 0.31174 1 2533600 + 4710 17830;29521 3096 3168 5517 5517 -0.13864018591493732 CMEYYFPY 8 Unmodified _CMEYYFPY_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.212646484375 2 558.214272 1114.41399 NaN NaN NaN NaN NaN NaN NaN 24.213 1 24.213 23.713 24.713 0 0 0 0 0.97444 1 12365 12365 2.8892 0.31174 1 + 4711 17830;29521 3096 3168 5518 5518 -0.13864018591493732 CMGRAVLKRG 10 Unmodified _CMGRAVLKRG_ 0 0 0 REV__ENST00000338946.10_1_X:54040912-54040951:-|nuORF REV__ENST00000338946.10_1_X:54040912-54040951:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2056884765625 3 364.203922 1089.58994 NaN NaN NaN NaN NaN NaN NaN 38.825 1 38.837 38.337 39.337 0.011452 0 0 0 0.99091 1 20660 20660 0.69767 0 1 + 4712 25677 3097 3169 5519 5519 0.0487266043312502 CMLWELKL 8 Unmodified _CMLWELKL_ 0 0 0 REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2735595703125 2 518.271924 1034.52929 0.60274 0.00031238 -0.11952 -6.1945E-05 0.48321 0.00025044 518.2718465254534 57.098 0.53383 57.098 56.813 57.346 0 79 23 5 0 0 0 0.63229 1 31648 31648 23.148 1.4018 1 41371000 + 4713 27894 3098 3170 5520 5520 0.013411303301609223 CMQANPHY 8 Unmodified _CMQANPHY_ 0 0 0 nc|ENSG00000121005|Q9H336-2|CRISPLD1;ENSG00000121005|ENST00000262207|CRISPLD1 nc|ENSG00000121005|Q9H336-2|CRISPLD1 nc|ENSG00000121005|Q9H336-2|CRISPLD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2792358398438 2 482.194205 962.373857 0.7293 0.00035166 -1.1704 -0.00056434 -0.44105 -0.00021267 482.19381943451526 67.783 0.22382 67.3 67.208 67.432 -0.48219 15 9 2 0 0 0 8.7369 1 37053 37053 2.8892 0 1 489870 4714 3560 3099 3171 5521 5521 -0.10883520471395514 CMQDKMPEV 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))MQDKMPEV_ C(1)MQDKMPEV C(63)MQDKMPEV 0 1 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;ENST00000426249.1_1_17:18365525-18365891:+|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS AL20221201_MKP_PDAC_01 4 569.2407836914062 2 569.240495 1136.46644 NaN NaN NaN NaN NaN NaN NaN 42.066 1 37.381 36.881 37.881 -4.6846 0 0 0 0.038824 1 25361 25361 62.573 44.426 1 4715 1364 3100 3172 5522 5522 124 -0.09633803520182482 CMTEIYYQF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))MTEIYYQF_ C(1)MTEIYYQF C(89)MTEIYYQF 0 1 0 ENSG00000183735|ENST00000331710|TBK1;ENST00000541805.1_1_12:64889334-64889560:+|nuORF ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.7607421875 2 627.762117 1253.50968 0.64341 0.00040391 -0.27134 -0.00017034 0.37207 0.00023357 627.7622004857732 80.924 0.36067 74.748 74.566 74.927 -6.1757 39 19 3 0 0 0 0.0086179 2 53051 53051;53179 89.427 67.68 1 24546000 4716 9185 3101 3173 5523;5524 5523 857 -0.10693290471272121 CNHCHEEHDH 10 Unmodified _CNHCHEEHDH_ 0 0 0 ENSG00000196950|ENST00000359634|SLC39A10 ENSG00000196950|ENST00000359634|SLC39A10 ENSG00000196950|ENST00000359634|SLC39A10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.7169799804688 2 630.717095 1259.41964 NaN NaN NaN NaN NaN NaN NaN 16.566 1 16.572 16.072 17.072 0.0050564 0 0 0 1.0061 1 8313 8313 0 0 1 4717 9888 3102 3174 5525 5525 -0.19969527027114964 CNNCNCNNCFD 11 Unmodified _CNNCNCNNCFD_ 0 0 0 REV__ENSG00000132749|ENST00000255087|TESMIN REV__ENSG00000132749|ENST00000255087|TESMIN MSMS AL20221201_MKP_PDAC_01 4 632.1857299804688 2 632.185925 1262.3573 NaN NaN NaN NaN NaN NaN NaN 97.819 1 91.643 91.143 92.143 -6.1757 0 0 0 0.9435 1 64835 64835 0 0 1 + 4718 19878 3103 3175 5526 5526 -0.263387574819717 CNRFSHNCEGL 11 Unmodified _CNRFSHNCEGL_ 0 0 0 REV__ENST00000478598.1_1_3:57505398-57505593:-|nuORF REV__ENST00000478598.1_1_3:57505398-57505593:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.270751953125 2 640.268964 1278.52337 0.8474 0.00054257 1.21 0.00077473 2.0574 0.0013173 640.2695572619323 92.231 0.96278 86.055 85.401 86.364 -6.1757 189 56 4 0 0 0 0.65108 1 60616 60616 8.7454 3.0136 1 42252000 + 4719 27639 3104 3176 5527 5527 -0.10474619919432371 CNTIKERGNVY 11 Unmodified _CNTIKERGNVY_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8856506347656 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 28.18 1 28.21 27.71 28.71 0.029564 0 0 0 0.94181 1 14664 14664 1.2148 0 1 + 4720 21984 3105 3177 5528 5528 -0.006769608023205365 CNTMCVGRQCA 11 Unmodified _CNTMCVGRQCA_ 0 0 0 REV__ENST00000490115.5_1_3:48586091-48594264:-|nuORF REV__ENST00000490115.5_1_3:48586091-48594264:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.82421875 3 395.825906 1184.45589 -0.48641 -0.00019253 -2.7843 -0.0011021 -3.2707 -0.0012946 396.1592449297335 53.659 0.12364 53.595 53.517 53.641 -0.063423 13 9 2 0 0 0 0.67477 1 29122 29122 6.6235 0.75532 1 7181100 + 4721 18908 3106 3178 5529 5529 -0.12896109446228365 CNWRRVFGFS 10 Unmodified _CNWRRVFGFS_ 0 0 0 REV__nc|ENSG00000006756|P51689-2|ARSD REV__nc|ENSG00000006756|P51689-2|ARSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5410766601562 3 424.541592 1270.60295 0.061952 2.6301E-05 -0.23285 -9.8856E-05 -0.1709 -7.2555E-05 424.87618215949357 16.683 0.21858 16.688 16.568 16.787 0.0050564 14 12 2 0 0 0 0.72247 1 8379 8379 0.13989 0 1 425770 + 4722 16998 3107 3179 5530 5530 -0.021531851831468884 CNYYQNLAV 9 Unmodified _CNYYQNLAV_ 0 0 0 ENSG00000185662|ENST00000523047|SMIM23 ENSG00000185662|ENST00000523047|SMIM23 ENSG00000185662|ENST00000523047|SMIM23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2472534179688 2 544.247492 1086.48043 NaN NaN NaN NaN NaN NaN NaN 27.535 1 27.564 27.064 28.064 0.028664 0 0 0 0.85798 1 14312 14312 0.52476 0.066424 1 4723 9396 3108 3180 5531 5531 -0.059350667052285644 CPAEAGVLLAY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAEAGVLLAY_ C(1)PAEAGVLLAY C(48)PAEAGVLLAY 0 1 0 nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.292236328125 2 582.291899 1162.56925 0.78398 0.0004565 -1.5271 -0.00088921 -0.7431 -0.0004327 582.2910316381982 75.515 0.3055 69.34 69.159 69.465 -6.1757 27 16 2 0 0 0 0.064513 1 49329 49329 47.749 18.667 1 9991600 4724 6186 3109 3181 5532 5532 616 -0.005536514655432256 CPANPTCIYKY 11 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PANPTC(Carbamidomethyl (C))IYKY_ C(1)PANPTC(1)IYKY C(110)PANPTC(110)IYKY 0 2 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.314697265625 2 693.812673 1385.61079 0.21051 0.00014605 0.55648 0.0003861 0.76699 0.00053215 694.3146434507236 45.951 0.24834 40.996 40.815 41.064 -4.9549 25 15 3 0 0 0 4.5211E-07 1 28282 28282 105.35 91.439 1 7406700 4725 4885 3110 3182 5533 5533 504;505 -0.06658838768521491 CPAPGPHPAL 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAPGPHPAL_ C(1)PAPGPHPAL C(71)PAPGPHPAL 0 1 0 nc|ENSG00000166886|Q15742-3|NAB2;ENSG00000166886|ENST00000300131|NAB2 nc|ENSG00000166886|Q15742-3|NAB2 nc|ENSG00000166886|Q15742-3|NAB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7528991699219 2 508.752744 1015.49094 0.65206 0.00033174 -0.93717 -0.00047679 -0.28511 -0.00014505 508.7526515772827 35.519 0.39552 31.326 31.188 31.584 -4.1928 34 24 2 0 0 0 0.025277 1 20624 20624 70.865 38.748 1 8186400 4726 7543 3111 3183 5534 5534 729 -0.01619039260140198 CPARFLHSY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PARFLHSY_ C(1)PARFLHSY C(48)PARFLHSY 0 1 0 ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1875305175781 3 384.186926 1149.53895 1.594 0.00061238 0.20799 7.9907E-05 1.8019 0.00069228 384.1870537737138 35.775 0.42057 31.582 31.382 31.802 -4.1928 47 26 2 0 0 0 0.044296 1 20750 20750 47.594 21.326 1 30495000 4727 6741 3112 3184 5535 5535 663 -0.02983965340058603 CPAVRLITL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PAVRLITL_ C(1)PAVRLITL C(93)PAVRLITL 0 1 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8076171875 2 521.807519 1041.60049 0.82356 0.00042974 -0.52997 -0.00027654 0.2936 0.0001532 521.8074225059044 69.597 0.53247 63.421 63.132 63.665 -6.1757 65 28 3 0 0 0 0.0082475 1 45436 45436 92.653 35.182 1 54628000 4728 9390 3113 3185 5536 5536 874 0.08134966359216378 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2758178710938 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 44.589 1 44.273 43.773 44.773 -0.31585 0 0 0 1.0061 1 23794 23794 0 0 1 4729 5667 3114 3186 5537 5537 -0.25037801615758326 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2384033203125 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 27.466 1 27.495 26.995 27.995 0.028664 0 0 0 1.0061 1 14274 14274 0 0 1 4730 5667 3114 3186 5538 5538 -0.25037801615758326 CPCCPAHCCC 10 Unmodified _CPCCPAHCCC_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8369750976562 2 520.140889 1038.26722 NaN NaN NaN NaN NaN NaN NaN 101.69 1 101.65 101.15 102.15 -0.045853 0 0 0 1.0061 1 56497 56497 0 0 1 4731 5667 3114 3186 5539 5539 -0.25037801615758326 CPCCWMWWAG 10 Unmodified _CPCCWMWWAG_ 0 0 0 ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF ENST00000496574.6_1_16:2157406-2157766:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 621.7210083007812 2 621.721218 1241.42788 NaN NaN NaN NaN NaN NaN NaN 5.4078 1 2.9258 2.4258 3.4258 -2.482 0 0 0 1.0061 1 2744 2744 0 0 1 4732 14373 3115 3187 5540 5540 -0.18317387635715932 CPCPHTNSF 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PC(Carbamidomethyl (C))PHTNSF_ C(1)PC(1)PHTNSF C(170)PC(170)PHTNSF 0 2 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2215576171875 2 560.220951 1118.42735 0.11252 6.3037E-05 -0.63579 -0.00035618 -0.52327 -0.00029315 560.2208803316913 25.823 0.43379 22.872 22.644 23.078 -2.9511 87 27 4 0 0 0 3.6865E-10 2 14073 14073;14186 168.66 139.58 1 81680000 4733 748 3116 3188 5541;5542 5541 59;60 -0.12712767759512644 CPDPGEVPEY 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))PDPGEVPEY_ C(1)PDPGEVPEY C(44)PDPGEVPEY 0 1 0 nc|ENSG00000064666|Q99439-2|CNN2;ENSG00000064666|ENST00000263097|CNN2 nc|ENSG00000064666|Q99439-2|CNN2 nc|ENSG00000064666|Q99439-2|CNN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.739501953125 2 581.739696 1161.46484 0.90947 0.00052907 -0.7161 -0.00041659 0.19336 0.00011249 581.7391127984278 47.229 0.5609 42.149 41.919 42.48 -5.0805 79 38 3 0 0 0 0.11755 2 29175 29175;29313 43.858 21.122 1 36074000 4734 882 3117 3189 5543;5544 5543 76 -0.10943398012932448 CPEEIFSALQY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PEEIFSALQY_ C(1)PEEIFSALQY C(60)PEEIFSALQY 0 1 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.8123168945312 2 678.810653 1355.60675 0.94192 0.00063938 -0.030332 -2.059E-05 0.91159 0.00061879 678.8108682205755 90.18 0.53621 84.004 83.739 84.275 -6.1757 56 30 3 0 0 0 0.017265 2 59493 59493;59631 60.074 48.579 1 10427000 4735 1605 3118 3190 5545;5546 5545 151 -0.05682604990579421 CPEGYRVTY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PEGYRVTY_ C(1)PEGYRVTY C(96)PEGYRVTY 0 1 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.75830078125 2 572.758223 1143.50189 1.1981 0.0006862 0.83842 0.00048021 2.0365 0.0011664 572.75786901035 37.002 0.56862 32.719 32.422 32.991 -4.2835 126 34 5 0 0 0 0.0082548 2 21710 21582;21710 96.367 70.967 1 58629000 4736 9884 3119 3191 5547;5548 5548 901 -0.06411681676490844 CPFDTAVQL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFDTAVQL_ C(1)PFDTAVQL C(51)PFDTAVQL 0 1 0 nc|ENSG00000115109|Q9HCM4-2|EPB41L5;nc|ENSG00000115109|Q9HCM4-4|EPB41L5;nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7506103515625 2 525.749867 1049.48518 0.89498 0.00047054 -0.59322 -0.00031188 0.30177 0.00015865 525.7501697538522 72.914 0.35134 66.738 66.504 66.855 -6.1757 30 17 2 0 0 0 0.038285 1 47642 47642 50.855 23.971 1 19126000 4737 16135 3120 3192 5549 5549 1010 -0.037581825624556586 CPFGGAFAL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGGAFAL_ C(1)PFGGAFAL C(46)PFGGAFAL 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2237243652344 2 470.223288 938.432024 1.2032 0.00056579 -0.9202 -0.0004327 0.28304 0.00013309 470.2231869727109 87.962 0.46149 81.786 81.531 81.993 -6.1757 58 25 3 0 0 0 0.047696 1 57928 57928 45.75 19.409 1 31558000 4738 5884 3121 3193 5550 5550 595 -0.03965515554466492 CPFGGAFAL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFGGAFAL_ C(1)PFGGAFAL C(56)PFGGAFAL 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.4414672851562 1 939.4393 938.432024 0.98446 0.00092484 -0.25413 -0.00023874 0.73033 0.0006861 939.4390209536227 87.919 0.38719 81.743 81.551 81.939 -6.1757 34 21 2 0 0 0 0.028712 2 57949 57949;58069 56.048 15.6 1 15643000 4739 5884 3121 3193 5551;5552 5551 595 -0.03965515554466492 CPFPDCAKAYY 11 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFPDC(Carbamidomethyl (C))AKAYY_ C(1)PFPDC(1)AKAYY C(87)PFPDC(87)AKAYY 0 2 0 ENSG00000129911|ENST00000250916|KLF16 ENSG00000129911|ENST00000250916|KLF16 ENSG00000129911|ENST00000250916|KLF16 MSMS AL20221201_MKP_PDAC_01 4 696.2950439453125 2 696.291573 1390.56859 NaN NaN NaN NaN NaN NaN NaN 53.488 1 47.684 47.184 48.184 -5.8042 0 0 0 0.00028607 1 33815 33815 87.258 72.01 1 4740 4166 3122 3194 5553 5553 417;418 -0.11106814176901025 CPFRRRYAL 9 Unmodified _CPFRRRYAL_ 0 0 0 REV__ENST00000596686.5_1_19:46273741-46282867:-|nuORF REV__ENST00000596686.5_1_19:46273741-46282867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8839721679688 3 394.550199 1180.62877 -0.05846 -2.3065E-05 1.8299 0.00072199 1.7714 0.00069892 394.55109637058376 17.937 0.1615 17.944 17.838 17.999 0.0060463 20 11 2 0 0 0 0.58865 1 9040 9040 1.0715 0 1 2122800 + 4741 29221 3123 3195 5554 5554 0.04567709059142544 CPFYNHEQM 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PFYNHEQM(Oxidation (M))_ C(1)PFYNHEQM CPFYNHEQM(1) C(180)PFYNHEQM CPFYNHEQM(180) 0 1 1 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000545717.1_1_12:31242007-31244021:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2432250976562 2 621.239341 1240.46413 0.30558 0.00018984 1.0704 0.000665 1.376 0.00085483 621.2405697997541 26.65 0.24266 23.699 23.56 23.803 -2.9511 30 12 3 0 0 0 9.232E-11 1 14719 14719 176.84 126.9 1 9527000 4742 479 3124 3196 5555 5555 30 67 -0.14648515933618 CPFYNHEQM 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PFYNHEQM_ C(1)PFYNHEQM C(150)PFYNHEQM 0 1 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF;ENST00000545717.1_1_12:31242007-31244021:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.24169921875 2 613.241883 1224.46921 1.1295 0.00069263 -0.97018 -0.00059495 0.15928 9.7677E-05 613.2414003314448 37.204 0.33615 32.92 32.736 33.072 -4.2835 56 20 4 0 0 0 0.00023314 2 21862 21730;21862 149.91 110.93 1 20564000 4743 479 3124 3197 5556;5557 5557 30 -0.13404212071031907 CPGPIITY 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))PGPIITY_ C(1)PGPIITY C(99)PGPIITY 0 1 0 ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENSG00000163159|ENST00000368892|VPS72 ENSG00000163159|ENST00000368892|VPS72 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.455810546875 1 920.454616 919.447339 0.64231 0.00059122 0.0026205 2.4121E-06 0.64493 0.00059363 920.4548666311575 61.824 0.30116 55.649 55.48 55.782 -6.1757 20 15 2 0 0 0 0.1036 1 39830 39830 98.807 55.839 1 14431000 4744 6961 3125 3198 5558 5558 683 -0.015606487572767946 CPHIWFERLE 10 Unmodified _CPHIWFERLE_ 0 0 0 ENST00000547237.1_1_14:25900789-25901323:-|nuORF ENST00000547237.1_1_14:25900789-25901323:-|nuORF ENST00000547237.1_1_14:25900789-25901323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.8250732421875 2 665.324065 1328.63358 -0.02348 -1.5622E-05 -2.288 -0.0015223 -2.3115 -0.0015379 665.3222530387889 92.871 0.12715 92.871 92.824 92.951 0 15 9 2 0 0 0 0.72196 1 51353 51353 0.45834 0.10771 1 262630 4745 15120 3126 3199 5559 5559 -0.01759451588736738 CPHIWFERLE 10 Unmodified _CPHIWFERLE_ 0 0 0 ENST00000547237.1_1_14:25900789-25901323:-|nuORF ENST00000547237.1_1_14:25900789-25901323:-|nuORF ENST00000547237.1_1_14:25900789-25901323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.3231811523438 2 665.324065 1328.63358 0.4181 0.00027817 -2.2117 -0.0014715 -1.7936 -0.0011934 665.3223535118835 93.43 0.29512 92.972 92.836 93.131 -0.4574 31 12 3 0 0 0 0.72196 1 51129 51129 0.45834 0.10771 1 821190 4746 15120 3126 3199 5560 5560 -0.01759451588736738 CPHPHRPLPF 10 Unmodified _CPHPHRPLPF_ 0 0 0 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8091430664062 2 600.808385 1199.60222 0.075488 4.5354E-05 0.12296 7.3874E-05 0.19845 0.00011923 600.8084356345681 73.325 0.30684 73.369 73.186 73.493 0.043594 34 13 3 0 0 0 0.31022 1 40456 40456 26.884 4.1474 1 12694000 + 4747 29512 3127 3200 5561 5561 0.010400201677839505 CPHPHRPLPF 10 Unmodified _CPHPHRPLPF_ 0 0 0 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.807373046875 2 600.808385 1199.60222 0.13023 7.8241E-05 -1.4178 -0.00085183 -1.2876 -0.00077359 600.8078080750954 73.583 0.55044 73.627 73.272 73.822 0.043983 60 24 4 0 0 0 0.31022 1 40559 40559 26.884 4.1474 1 15612000 + 4748 29512 3127 3200 5562 5562 0.010400201677839505 CPHPHRPLPF 10 Unmodified _CPHPHRPLPF_ 0 0 0 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8091430664062 2 600.808385 1199.60222 0.13023 7.8241E-05 -1.4178 -0.00085183 -1.2876 -0.00077359 600.8078080750954 73.583 0.55044 73.627 73.272 73.822 0.043983 60 24 4 0 0 0 0.21351 1 40456 40456 26.884 5.3467 1 15612000 + 4749 29512 3127 3200 5563 5563 0.010400201677839505 CPHPHRPLPF 10 Unmodified _CPHPHRPLPF_ 0 0 0 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3092651367188 2 600.808385 1199.60222 0.08298 4.9855E-05 -0.38428 -0.00023088 -0.3013 -0.00018102 601.3095461834209 80.952 0.67951 74.776 74.35 75.029 -6.1757 89 37 3 0 0 0 0.31022 2 52912 52912;52921 26.884 4.1474 1 38699000 + 4750 29512 3127 3200 5564;5565 5564 0.010400201677839505 CPHSAEILAAY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PHSAEILAAY_ C(1)PHSAEILAAY C(72)PHSAEILAAY 0 1 0 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.29296875 2 616.29243 1230.57031 0.60085 0.0003703 -0.054171 -3.3385E-05 0.54668 0.00033691 616.2925511844107 51.49 0.35137 45.841 45.64 45.991 -5.649 40 21 3 0 0 0 0.0069872 1 32375 32375 71.922 53.776 1 67414000 4751 7886 3128 3201 5566 5566 768 -0.035754370966515125 CPHTIGVEF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PHTIGVEF_ C(1)PHTIGVEF C(78)PHTIGVEF 0 1 0 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2520751953125 2 530.250034 1058.48552 0.66345 0.00035179 -1.5201 -0.00080606 -0.8567 -0.00045427 530.2496695441105 49.267 0.2657 49.267 49.128 49.393 0 40 12 4 0 0 0 0.010877 2 27067 27043;27067 77.984 43.882 1 24839000 4752 3429 3129 3202 5567;5568 5568 346 -0.04138762842603683 CPHTIGVEF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PHTIGVEF_ C(1)PHTIGVEF C(78)PHTIGVEF 0 1 0 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2507934570312 2 530.250034 1058.48552 0.69087 0.00036634 -1.5198 -0.00080589 -0.82895 -0.00043955 530.2491156254441 49.587 0.20141 49.195 49.057 49.258 -0.3923 23 9 3 0 0 0 0.010877 1 26633 26633 77.984 27.129 1 11144000 4753 3429 3129 3202 5569 5569 346 -0.04138762842603683 CPHTIGVEF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PHTIGVEF_ C(1)PHTIGVEF C(78)PHTIGVEF 0 1 0 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2506713867188 2 530.250034 1058.48552 0.81027 0.00042965 -0.60609 -0.00032138 0.20418 0.00010827 530.2501776829662 54.771 0.57787 48.906 48.591 49.168 -5.8653 102 35 4 0 0 0 0.010877 2 34860 34723;34860 77.984 49.497 1 552150000 4754 3429 3129 3202 5570;5571 5571 346 -0.04138762842603683 CPIDVRRPL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIDVRRPL_ C(1)PIDVRRPL C(46)PIDVRRPL 0 1 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;nc|ENSG00000106526|Q9C0K3-2|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8785095214844 3 375.878092 1124.61245 0.86485 0.00032508 0.38432 0.00014446 1.2492 0.00046954 375.8781935606698 40.192 0.25795 35.662 35.566 35.824 -4.5294 36 21 2 0 0 0 0.047714 1 23979 23979 45.74 34.245 1 33905000 4755 2435;3085 3130 3203 5572 5572 244 0.05512583102381541 CPIDVRRPLY 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIDVRRPLY_ C(1)PIDVRRPLY C(51)PIDVRRPLY 0 1 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;nc|ENSG00000106526|Q9C0K3-2|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2334289550781 3 430.232535 1287.67578 0.71261 0.00030659 0.27334 0.0001176 0.98595 0.00042419 430.2327528890552 46.082 0.25626 41.128 40.951 41.208 -4.9549 26 16 2 0 0 0 0.078417 1 28355 28355 51.488 41.724 1 13292000 4756 2435;3085 3131 3204 5573 5573 244 0.043445238196227365 CPIFDIPGRLY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIFDIPGRLY_ C(1)PIFDIPGRLY C(74)PIFDIPGRLY 0 1 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MSMS AL20221201_MKP_PDAC_01 4 675.8471069335938 2 675.847373 1349.68019 NaN NaN NaN NaN NaN NaN NaN 92.001 1 85.825 85.325 86.325 -6.1757 0 0 0 0.01405 1 60829 60829 74.2 44.359 1 4757 2567 3132 3205 5574 5574 259 0.019339882425356336 CPIIEDKMII 10 Unmodified _CPIIEDKMII_ 0 0 0 REV__ENST00000528483.1_1_11:105929560-105929824:-|nuORF REV__ENST00000528483.1_1_11:105929560-105929824:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8125 2 587.814153 1173.61375 NaN NaN NaN NaN NaN NaN NaN 69.348 1 69.379 68.879 69.879 0.030914 0 0 0 0.79473 1 38116 38116 12.532 1.7076 1 + 4758 23267 3133 3206 5575 5575 0.033890363562704806 CPIKEVVLY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIKEVVLY_ C(1)PIKEVVLY C(59)PIKEVVLY 0 1 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8079833984375 2 560.807185 1119.59982 0.62468 0.00035032 -1.1063 -0.00062045 -0.48167 -0.00027012 560.8085647205778 52.655 0.47028 52.221 52.044 52.514 -0.43367 49 23 3 0 0 0 0.024882 1 28440 28440 58.679 34.005 1 13507000 4759 4807 3134 3207 5576 5576 489 0.04480126919497707 CPIKEVVLY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIKEVVLY_ C(1)PIKEVVLY C(92)PIKEVVLY 0 1 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8080444335938 2 560.807185 1119.59982 0.70826 0.0003972 -2.4271 -0.0013611 -1.7188 -0.00096392 560.8075784002981 58.15 1.2073 52.123 51.638 52.845 -6.0275 178 67 4 0 0 0 0.0082661 2 37187 37187;37319 92.491 56.447 1 164380000 4760 4807 3134 3207 5577;5578 5577 489 0.04480126919497707 CPIKEVVLY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIKEVVLY_ 0 1 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.807185 1119.59982 0.059318 3.3266E-05 0.15455 8.6675E-05 0.21387 0.00011994 560.8075914274261 52.181 0.24805 52.181 52.016 52.264 0 0.056897 0.0017729 NaN 92.491 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2491200 4761 4807 3134 3207 489 0.04480126919497707 CPILGDHKY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PILGDHKY_ C(1)PILGDHKY C(41)PILGDHKY 0 1 0 ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4 ENST00000530903.1_1_11:126073315-126075741:-|nuORF ENST00000530903.1_1_11:126073315-126075741:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1830444335938 3 368.183181 1101.52771 1.172 0.0004315 0.13576 4.9984E-05 1.3077 0.00048148 368.1832232617923 31.667 0.3678 27.971 27.823 28.19 -3.6958 24 19 2 0 0 0 0.067618 1 17961 17961 40.725 18.978 1 26318000 4762 7356 3135 3208 5579 5579 719 -0.018987874342428768 CPIQLNEGVSF 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIQLNEGVSF_ C(1)PIQLNEGVSF C(68)PIQLNEGVSF 0 1 0 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 MSMS AL20221201_MKP_PDAC_01 4 632.3067016601562 2 632.305538 1262.59652 NaN NaN NaN NaN NaN NaN NaN 76.143 1 69.967 69.467 70.467 -6.1757 0 0 0 0.032104 1 49809 49809 67.838 46.301 1 4763 10382 3136 3209 5580 5580 936 -0.02427167925179674 CPISRYGCKCY 11 Unmodified _CPISRYGCKCY_ 0 0 0 ENST00000249923.7_1_11:14501240-14502350:-|nuORF ENST00000249923.7_1_11:14501240-14502350:-|nuORF ENST00000249923.7_1_11:14501240-14502350:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5250244140625 3 431.524333 1291.55117 1.0545 0.00045504 0.52909 0.00022831 1.5836 0.00068335 431.5245746172701 34.831 0.37394 30.736 30.599 30.973 -4.0951 28 21 2 0 0 0 0.71618 1 20156 20156 1.1098 0.41209 1 6355100 4764 11136 3137 3210 5581 5581 -0.08294432983552724 CPIVERLTNSM 11 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PIVERLTNSM(Oxidation (M))_ C(1)PIVERLTNSM CPIVERLTNSM(1) C(170)PIVERLTNSM CPIVERLTNSM(170) 0 1 1 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MSMS AL20221201_MKP_PDAC_01 4 668.3240356445312 2 668.323405 1334.63226 NaN NaN NaN NaN NaN NaN NaN 46.216 1 41.261 40.761 41.761 -4.9549 0 0 0 2.5079999999999997E-44 1 28504 28504 165.58 99.128 1 4765 1377 3138 3211 5582 5582 127 232 -0.021674537398212124 CPIVERLTNSM 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PIVERLTNSM_ C(1)PIVERLTNSM C(180)PIVERLTNSM 0 1 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MSMS AL20221201_MKP_PDAC_01 4 660.3272094726562 2 660.325947 1318.63734 NaN NaN NaN NaN NaN NaN NaN 60.386 1 54.272 53.772 54.772 -6.1147 0 0 0 3.9070000000000005E-54 1 38855 38855 177.58 119.85 1 4766 1377 3138 3212 5583 5583 127 -0.009231498772123814 CPKCNWHYKY 10 Unmodified _CPKCNWHYKY_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF;ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2 nc|ENSG00000091656|Q86UP3|ZFHX4;ENSG00000140836|ENST00000268489|ZFHX3;ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.2986450195312 2 671.296993 1340.57943 -0.69578 -0.00046708 1.8012 0.0012091 1.1054 0.00074204 671.2983264026547 26.962 0.23089 26.962 26.824 27.055 0 22 10 3 0 0 0 0.63399 1 13863 13863 9.3831 4.4861 1 3098400 4767 5274;4816;1595 3139 3213 5584 5584 -0.07723367011976734 CPKLRKLVL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PKLRKLVL_ C(1)PKLRKLVL C(58)PKLRKLVL 0 1 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2433471679688 3 376.242483 1125.70562 1.31 0.00049287 -0.44647 -0.00016798 0.86351 0.00032489 376.2424937310195 83.051 1.003 76.876 76.25 77.253 -6.1757 164 55 4 0 0 0 0.025842 2 54257 54257;54806 57.722 30.093 1 82413000 4768 8706 3140 3214 5585;5586 5585 829 0.14779507555613236 CPKLRKLVL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PKLRKLVL_ C(1)PKLRKLVL C(61)PKLRKLVL 0 1 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 563.8611450195312 2 563.860086 1125.70562 NaN NaN NaN NaN NaN NaN NaN 83.127 1 76.951 76.451 77.451 -6.1757 0 0 0 0.04157 1 54650 54650 61.357 29.052 1 4769 8706 3140 3214 5587 5587 829 0.14779507555613236 CPKPDLCEY 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))PKPDLC(Carbamidomethyl (C))EY_ C(1)PKPDLC(1)EY C(120)PKPDLC(120)EY 0 2 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2520751953125 2 591.251917 1180.48928 1.0745 0.00063531 -1.0796 -0.00063833 -0.0051037 -3.0176E-06 591.2513795311816 37.178 0.45576 32.895 32.682 33.137 -4.2835 86 27 4 0 0 0 0.0047067 2 21824 21688;21824 118.07 60.346 1 59304000 4770 16188 3141 3215 5588;5589 5589 1017;1018 -0.09374461131051248 CPLDQAIGL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PLDQAIGL_ C(1)PLDQAIGL C(110)PLDQAIGL 0 1 0 ENSG00000197956|ENST00000368719|S100A6;ENST00000462951.2_1_1:153507620-153508442:-|nuORF ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.753173828125 2 493.75241 985.490267 0.85943 0.00042435 0.21509 0.0001062 1.0745 0.00053055 493.75254515514024 72.875 0.53986 66.699 66.412 66.952 -6.1757 40 27 2 0 0 0 0.0067112 2 47715 47594;47715 112.59 47.358 1 16717000 4771 10028 3142 3216 5590;5591 5591 911 -0.003058786998508367 CPLEKCNIKAK 11 Unmodified _CPLEKCNIKAK_ 0 0 0 KCNA5|p.V588I|1|0.23|ENSG00000130037|chr12:5045909-5045909|G/A|missense_variant KCNA5|p.V588I|1|0.23|ENSG00000130037|chr12:5045909-5045909|G/A|missense_variant KCNA5|p.V588I|1|0.23|ENSG00000130037|chr12:5045909-5045909|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5701904296875 3 416.226393 1245.65735 NaN NaN NaN NaN NaN NaN NaN 18.84 1 18.846 18.346 19.346 0.0060463 0 0 0 0.94165 1 9563 9563 0.45452 0 1 4772 15935 3143 3217 5592 5592 0.04434645853393704 CPLLCPSPLAR 11 Unmodified _CPLLCPSPLAR_ 0 0 0 REV__nc|ENSG00000142609|Q9C0B2-2|CFAP74 REV__nc|ENSG00000142609|Q9C0B2-2|CFAP74 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5443115234375 3 390.543833 1168.60967 1.2093 0.00047227 0.21029 8.2128E-05 1.4196 0.0005544 390.5438205806214 32.102 0.82725 28.406 28.086 28.914 -3.6958 111 46 3 0 0 0 0.48615 1 18116 18116 9.7643 0 1 101830000 + 4773 29672 3144 3218 5593 5593 0.032109916532135685 CPLLGMWR 8 Unmodified _CPLLGMWR_ 0 0 0 REV__ENST00000366718.5_1_1:228332177-228332423:+|nuORF REV__ENST00000366718.5_1_1:228332177-228332423:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2484436035156 2 488.248783 974.483013 NaN NaN NaN NaN NaN NaN NaN 27.354 1 27.382 26.882 27.882 0.028664 0 0 0 0.97444 1 14214 14214 0.79363 0 1 + 4774 25964 3145 3219 5594 5594 -0.005248897812521136 CPLLKPWAL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PLLKPWAL_ C(1)PLLKPWAL C(110)PLLKPWAL 0 1 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3141479492188 2 549.312438 1096.61032 1.0974 0.00060283 -0.6092 -0.00033464 0.48822 0.00026818 549.3122423172131 91.865 0.94532 85.689 85.29 86.235 -6.1757 186 54 5 0 0 0 0.0077963 4 60585 60585;60704;60822;60951 109.63 109.63 1 176410000 4775 6042 3146 3220 5595;5596;5597;5598 5595 604 0.06588154364567345 CPLMAAVTY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PLMAAVTY_ C(1)PLMAAVTY C(40)PLMAAVTY 0 1 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF;ENST00000518921.1_1_8:63055996-63056374:-|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2429809570312 2 513.243363 1024.47217 0.71726 0.00036813 -0.16649 -8.545E-05 0.55077 0.00028268 513.2430903659856 69.384 0.34963 63.209 63.011 63.36 -6.1757 27 18 2 0 0 0 0.068777 1 45408 45408 40.449 15.775 1 17595000 4776 7539 3147 3221 5599 5599 728 -0.03908336946210511 CPMKAASIL 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PM(Oxidation (M))KAASIL_ C(1)PMKAASIL CPM(1)KAASIL C(64)PMKAASIL CPM(64)KAASIL 0 1 1 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7579650878906 2 503.756638 1005.49872 1.2556 0.0006325 -0.0022151 -1.1159E-06 1.2534 0.00063138 503.75626041200337 37.293 0.40298 33.01 32.81 33.213 -4.2835 40 23 2 0 0 0 0.019303 1 21830 21830 64.236 29.304 1 9387700 4777 6367 3148 3222 5600 5600 625 1117 -0.0038064805486328623 CPMKAASIL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PMKAASIL_ C(1)PMKAASIL C(59)PMKAASIL 0 1 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MSMS AL20221201_MKP_PDAC_01 4 495.7597045898438 2 495.759181 989.503808 NaN NaN NaN NaN NaN NaN NaN 49.158 1 43.762 43.262 44.262 -5.3961 0 0 0 0.047623 1 30691 30691 58.679 20.705 1 4778 6367 3148 3223 5601 5601 625 0.008636558077569134 CPMMRPPARLM 11 Unmodified _CPMMRPPARLM_ 0 0 0 ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENST00000514820.1_1_3:129918586-129918748:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.8827819824219 3 434.881575 1301.62289 NaN NaN NaN NaN NaN NaN NaN 0.82267 1 -1.6593 -2.1593 -1.1593 -2.482 0 0 0 0.94301 1 433 433 0.094841 0 1 4779 14661 3149 3224 5602 5602 -0.015852168306992098 CPNHFEGHYQY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PNHFEGHYQY_ C(1)PNHFEGHYQY C(130)PNHFEGHYQY 0 1 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.5312805175781 3 484.531421 1450.57243 0.66978 0.00032453 0.23452 0.00011363 0.9043 0.00043816 484.53160461884147 29.435 0.37538 26.134 25.952 26.327 -3.3016 55 23 3 0 0 0 8.4163E-15 2 16475 16475;16592 130.95 122.06 1 197330000 4780 3548;3497 3150 3225 5603;5604 5603 352 -0.1348300835882128 CPNHFEGHYQY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PNHFEGHYQY_ C(1)PNHFEGHYQY C(250)PNHFEGHYQY 0 1 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 726.7965698242188 2 726.293493 1450.57243 0.47001 0.00034136 -0.21832 -0.00015856 0.25169 0.0001828 726.7943484778918 29.442 0.12923 26.141 26.039 26.168 -3.3016 13 7 2 0 0 0 4.9986E-105 1 16511 16511 248.96 219.11 1 30762000 4781 3548;3497 3150 3225 5605 5605 352 -0.1348300835882128 CPNLKRLWL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PNLKRLWL_ C(1)PNLKRLWL C(64)PNLKRLWL 0 1 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8971252441406 3 400.562104 1198.66448 1.1884 0.00047604 0.18227 7.3011E-05 1.3707 0.00054906 400.5620726961167 87.646 0.61935 81.47 81.163 81.782 -6.1757 85 33 3 0 0 0 0.01958 2 57919 57791;57919 63.961 47.686 1 27459000 4782 703 3151 3226 5606;5607 5607 53 0.07309746516148152 CPPAMRLAF 9 Unmodified _CPPAMRLAF_ 0 0 0 ENST00000546727.5_1_12:113545343-113557136:-|nuORF;ENST00000548972.5_1_12:113545343-113573291:-|nuORF;ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1 ENST00000546727.5_1_12:113545343-113557136:-|nuORF ENST00000546727.5_1_12:113545343-113557136:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7476806640625 2 503.254065 1004.49358 0.57033 0.00028702 -1.6503 -0.0008305 -1.0799 -0.00054348 503.25299418449396 36.059 0.28865 36.059 35.878 36.167 0 23 14 2 0 0 0 0.30562 1 19145 19145 16.942 1.1741 1 10099000 4783 2784 3152 3227 5608 5608 -0.008489071268172665 CPPGMEVERF 10 Unmodified _CPPGMEVERF_ 0 0 0 REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7623901367188 2 582.762452 1163.51035 0.21014 0.00012246 -0.95976 -0.00055931 -0.74963 -0.00043685 582.7622876302231 59.831 0.35743 59.34 59.151 59.509 -0.49079 73 17 6 0 0 0 0.63399 1 32507 32507 9.3831 0.63772 1 97658000 + 4784 26571 3153 3228 5609 5609 -0.06486451031537399 CPPGMEVERF 10 Unmodified _CPPGMEVERF_ 0 0 0 REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7626953125 2 582.762452 1163.51035 0.74598 0.00043473 -0.42606 -0.00024829 0.31992 0.00018644 582.7624615588751 59.46 0.24153 59.407 59.293 59.535 -0.053059 28 12 4 0 0 0 0.63399 1 32393 32393 9.3831 0.63772 1 5966400 + 4785 26571 3153 3228 5610 5610 -0.06486451031537399 CPPGMEVERF 10 Unmodified _CPPGMEVERF_ 0 0 0 REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF REV__ENST00000398793.6_1_22:22336836-22337043:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.762452 1163.51035 0.74598 0.00043473 -0.42606 -0.00024829 0.31992 0.00018644 582.7624615588751 59.46 0.24153 59.407 59.293 59.535 -0.053059 0.033244 0.00042301 NaN 9.3831 28 12 4 NaN NaN NaN NaN 0 NaN NaN 0 5966400 + 4786 26571 3153 3228 -0.06486451031537399 CPPGPVPCT 9 Unmodified _CPPGPVPCT_ 0 0 0 ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF ENST00000303212.2_1_19:5824142-5828303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.6962585449219 2 435.696049 869.377545 0.73573 0.00032056 0.015093 6.5761E-06 0.75083 0.00032713 435.696100657987 28.349 0.57985 25.2 24.896 25.476 -3.1482 54 30 2 0 0 0 0.39863 1 15716 15716 12.532 12.532 1 8354300 4787 11590 3154 3229 5611 5611 -0.06236850697530372 CPPPCSSV 8 Unmodified _CPPPCSSV_ 0 0 0 ENST00000270747.7_1_1:16534695-16539049:-|nuORF ENST00000270747.7_1_1:16534695-16539049:-|nuORF ENST00000270747.7_1_1:16534695-16539049:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1691284179688 2 395.167124 788.319696 NaN NaN NaN NaN NaN NaN NaN 72.738 1 72.738 72.238 73.238 0 0 0 0 0.97444 1 40501 40501 0.69038 0 1 4788 11364 3155 3230 5612 5612 -0.08293112622948229 CPPPDQVTISY 11 Unmodified _CPPPDQVTISY_ 0 0 0 ENST00000496420.5_1_7:92123531-92130970:-|nuORF ENST00000496420.5_1_7:92123531-92130970:-|nuORF ENST00000496420.5_1_7:92123531-92130970:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.28662109375 2 610.286814 1218.55907 0.19941 0.0001217 -0.84362 -0.00051485 -0.64422 -0.00039316 610.2860477771306 66.42 0.58475 65.937 65.586 66.171 -0.48323 45 30 3 0 0 0 0.71036 1 36349 36349 3.2813 0.54611 1 3091500 4789 14368 3156 3231 5613 5613 -0.04146259190770252 CPQHPGEAL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PQHPGEAL_ C(1)PQHPGEAL C(130)PQHPGEAL 0 1 0 ENSG00000169871|ENST00000306085|TRIM56;nc|ENSG00000169871|Q9BRZ2-3|TRIM56;nc|ENSG00000169871|Q9BRZ2-2|TRIM56 ENSG00000169871|ENST00000306085|TRIM56;nc|ENSG00000169871|Q9BRZ2-2|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.732666015625 2 504.732009 1007.44946 0.26022 0.00013134 -1.7194 -0.00086785 -1.4592 -0.0007365 504.7308004733148 24.358 0.24226 21.531 21.392 21.634 -2.8273 28 13 3 0 0 0 0.0021556 1 13231 13231 131.27 63.924 1 8695900 4790 7921;16374 3157 3232 5614 5614 772 -0.053962200194632715 CPQPLLRVSY 10 Unmodified _CPQPLLRVSY_ 0 0 0 REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3162841796875 2 588.315709 1174.61686 1.0607 0.00062404 0.12224 7.1918E-05 1.183 0.00069596 588.3159387305446 71.37 0.43601 71.409 71.184 71.62 0.039024 42 19 3 0 0 0 0.65773 1 39256 39256 7.609 0.88579 1 2739700 + 4791 26267 3158 3233 5615 5615 0.03654047525310489 CPQRAQRMNT 10 Unmodified _CPQRAQRMNT_ 0 0 0 ENSG00000154803|ENST00000285071|FLCN;ENST00000466317.1_1_17:17124695-17126113:-|nuORF;nc|ENSG00000154803|Q8NFG4-2|FLCN ENSG00000154803|ENST00000285071|FLCN ENSG00000154803|ENST00000285071|FLCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1941223144531 3 402.193975 1203.56009 0.98972 0.00039806 -0.99795 -0.00040137 -0.0082277 -3.3091E-06 402.19356685433024 19.006 0.37665 16.384 16.205 16.581 -2.6215 41 24 2 0 0 0 0.64628 1 10088 10088 5.0475 0 1 3914800 4792 6350 3159 3234 5616 5616 -0.033543233028694885 CPQVINAAL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PQVINAAL_ C(1)PQVINAAL C(67)PQVINAAL 0 1 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MSMS AL20221201_MKP_PDAC_01 4 493.2613830566406 2 493.260402 984.506251 NaN NaN NaN NaN NaN NaN NaN 61.193 1 55.045 54.545 55.545 -6.1478 0 0 0 0.029091 1 39401 39401 67.344 31.3 1 4793 671;924 3160 3235 5617 5617 48 0.013378275370428128 CPRAVIHLL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRAVIHLL_ C(1)PRAVIHLL C(46)PRAVIHLL 0 1 0 ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS AL20221201_MKP_PDAC_01 4 360.2117004394531 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 53.317 1 47.513 47.013 48.013 -5.8042 0 0 0 0.091025 1 33681 33681 45.7 21.026 1 4794 983 3161 3236 5618 5618 87 0.07601788453325753 CPRPEKGTKF 10 Unmodified _CPRPEKGTKF_ 0 0 0 nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3 nc|ENSG00000196632|Q9BYP7-3|WNK3 nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2068481445312 3 388.206098 1161.59646 1.0703 0.00041549 -1.3307 -0.00051658 -0.2604 -0.00010109 388.2058415006512 18.402 0.33263 15.78 15.638 15.971 -2.6215 75 31 3 0 0 0 0.64628 1 9657 9657 7.9454 0.33645 1 10169000 4795 9851 3162 3237 5619 5619 0.022128768654965825 CPRPPDSVL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRPPDSVL_ C(1)PRPPDSVL C(54)PRPPDSVL 0 1 0 ENST00000467168.5_1_X:153626860-153629039:+|nuORF ENST00000467168.5_1_X:153626860-153629039:+|nuORF ENST00000467168.5_1_X:153626860-153629039:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7616577148438 2 520.763309 1039.51206 0.44132 0.00022982 -0.23588 -0.00012284 0.20544 0.00010698 520.7633118721237 41.433 0.63066 36.825 36.513 37.144 -4.6079 58 40 2 0 0 0 0.032796 2 24875 24744;24875 53.833 18.373 1 15325000 4796 13770 3163 3238 5620;5621 5621 983 -0.006110739512678265 CPRPPDSVL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRPPDSVL_ 0 1 0 ENST00000467168.5_1_X:153626860-153629039:+|nuORF ENST00000467168.5_1_X:153626860-153629039:+|nuORF ENST00000467168.5_1_X:153626860-153629039:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.763309 1039.51206 0.83668 0.00043571 -1.2925 -0.00067309 -0.45583 -0.00023738 520.7626031943907 36.702 0.22977 36.702 36.566 36.796 0 -0.061464 -0.0007812 NaN 53.833 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1220000 4797 13770 3163 3238 983 -0.006110739512678265 CPRSPPARR 9 Unmodified _CPRSPPARR_ 0 0 0 nc|ENSG00000184402|O75177-5|SS18L1 nc|ENSG00000184402|O75177-5|SS18L1 nc|ENSG00000184402|O75177-5|SS18L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7803955078125 2 520.282534 1038.55052 1.1617 0.00060441 -1.337 -0.00069562 -0.17532 -9.1215E-05 520.2822473588816 58.33 0.92685 52.256 51.924 52.851 -6.0745 180 50 5 0 0 0 0.32871 1 37567 37567 15.847 5.0233 1 491740000 4798 16456 3164 3239 5622 5622 0.032782764739067716 CPRTSGFL 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRTSGFL_ C(1)PRTSGFL C(54)PRTSGFL 0 1 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2321472167969 2 469.231645 936.448736 0.52263 0.00024524 -0.14524 -6.8152E-05 0.37739 0.00017708 469.23143980360373 41.234 0.38347 36.626 36.371 36.754 -4.6079 41 23 2 0 0 0 0.31379 1 24638 24638 53.833 13.875 1 18525000 4799 4412 3165 3240 5623 5623 448 -0.022030146685096952 CPRVINLHEVY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PRVINLHEVY_ C(1)PRVINLHEVY C(62)PRVINLHEVY 0 1 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MSMS AL20221201_MKP_PDAC_01 4 700.3613891601562 2 700.361179 1398.7078 NaN NaN NaN NaN NaN NaN NaN 49.006 1 43.609 43.109 44.109 -5.3961 0 0 0 0.052661 1 30570 30570 61.602 40.065 1 4800 1323 3166 3241 5624 5624 118 0.024398915027404655 CPSAKGAIILY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PSAKGAIILY_ C(1)PSAKGAIILY C(110)PSAKGAIILY 0 1 0 nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22;ENST00000545184.1_1_11:63997228-63997459:+|nuORF nc|ENSG00000149761|Q9BRQ3-3|NUDT22 nc|ENSG00000149761|Q9BRQ3-3|NUDT22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.824462890625 2 596.823366 1191.63218 0.10652 6.3571E-05 0.24632 0.00014701 0.35283 0.00021058 596.8233723297312 56.843 0.37083 50.867 50.668 51.038 -5.9769 43 21 3 0 0 0 5.0591E-09 1 36287 36287 114.19 70.414 1 45407000 4801 6034 3167 3242 5625 5625 602 0.044029143225088774 CPSDKEVEIAY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PSDKEVEIAY_ C(1)PSDKEVEIAY C(81)PSDKEVEIAY 0 1 0 ENSG00000169504|ENST00000374379|CLIC4 ENSG00000169504|ENST00000374379|CLIC4 ENSG00000169504|ENST00000374379|CLIC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8006591796875 2 655.800285 1309.58602 0.44628 0.00029267 -0.092372 -6.0578E-05 0.3539 0.00023209 655.8004214375252 44.365 0.28886 39.513 39.343 39.632 -4.852 32 21 2 0 0 0 0.0018376 1 27093 27093 80.676 54.655 1 17586000 4802 7879 3168 3243 5626 5626 767 -0.05639195370258676 CPSQPKQERI 10 Unmodified _CPSQPKQERI_ 0 0 0 ENST00000332624.7_1_2:202285189-202285387:-|nuORF ENST00000332624.7_1_2:202285189-202285387:-|nuORF ENST00000332624.7_1_2:202285189-202285387:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8734436035156 3 395.873007 1184.59719 -0.39979 -0.00015827 0.71645 0.00028362 0.31665 0.00012535 395.8731782410239 35.671 0.17402 35.449 35.372 35.546 -0.2224 20 7 3 0 0 0 0.55245 1 18684 18684 8.7518 1.6501 1 5847800 4803 11873 3169 3244 5627 5627 0.012276715145389971 CPTDLSCVIRN 11 Unmodified _CPTDLSCVIRN_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P;nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P;nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7-2|ADGRF2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.792236328125 2 610.79174 1219.56893 1.1555 0.00070576 -0.46462 -0.00028379 0.69086 0.00042197 610.7918475132964 64.105 0.23832 64.095 63.976 64.214 -0.010529 24 11 3 0 0 0 0.65846 1 35110 35110 8.1555 1.4324 1 5946300 4804 16342;16341 3170 3245 5628 5628 -0.03207394457058399 CPTGFKVGINY 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))PTGFKVGINY_ C(1)PTGFKVGINY C(69)PTGFKVGINY 0 1 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8 ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3117065429688 2 628.310623 1254.60669 1.2164 0.00076425 -0.41044 -0.00025789 0.80591 0.00050636 628.3102137663038 58.666 0.72307 52.592 52.145 52.868 -6.0745 59 39 2 0 0 0 0.0091632 1 37602 37602 68.76 40.265 1 15510000 4805 3708;4027;7630;9198;16164 3171 3246 5629 5629 366 -0.010425601999259015 CPTILPYPKF 10 Unmodified _CPTILPYPKF_ 0 0 0 REV__ENSG00000155816|ENST00000319653|FMN2 REV__ENSG00000155816|ENST00000319653|FMN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2260131835938 3 393.547461 1177.62055 1.2428 0.0004891 -1.1559 -0.00045489 0.086921 3.4208E-05 393.546573054698 50.301 0.14109 50.252 50.169 50.31 -0.048824 10 6 2 0 0 0 0.23862 1 27232 27232 1.9064 0 1 664220 + 4806 21289 3172 3247 5630 5630 0.03884717299138174 CPTSYMRQFG 10 Unmodified _CPTSYMRQFG_ 0 0 0 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.8536376953125 2 595.260076 1188.5056 1.0309 0.00061364 -0.70598 -0.00042024 0.32489 0.0001934 595.2594781578844 64.033 0.32728 57.857 57.669 57.996 -6.1757 26 17 2 0 0 0 0.23057 1 41536 41536 13.042 5.7532 1 14151000 + 4807 20336 3173 3248 5631 5631 -0.08111335174294254 CPWLVLLC 8 Unmodified _CPWLVLLC_ 0 0 0 ENSG00000122121|ENST00000371106|XPNPEP2 ENSG00000122121|ENST00000371106|XPNPEP2 ENSG00000122121|ENST00000371106|XPNPEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2505493164062 2 473.748085 945.481616 -0.15262 -7.2302E-05 0.014764 6.9945E-06 -0.13785 -6.5308E-05 473.74766602593786 71.197 0.21807 71.197 71.019 71.237 0 11 8 2 0 0 0 0.80975 1 39659 39659 0.79363 0 1 465810 4808 3623 3174 3249 5632 5632 0.00669476129985469 CPWPLVIN 8 Unmodified _CPWPLVIN_ 0 0 0 nc|ENSG00000151148|Q7Z3V4-2|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.4925537109375 1 941.491336 940.484059 0.50195 0.00047258 0.9258 0.00087164 1.4278 0.0013442 941.491984092066 51.217 0.33745 51.217 51.032 51.369 0 36 15 3 0 0 0 0.74163 1 28318 28318 13.508 13.508 1 13968000 4809 16271 3175 3250 5633 5633 0.011436478592941057 CPWQLWIL 8 Unmodified _CPWQLWIL_ 0 0 0 ENST00000532085.1_1_11:118895622-118896243:-|nuORF ENST00000532085.1_1_11:118895622-118896243:-|nuORF ENST00000532085.1_1_11:118895622-118896243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.77978515625 2 529.778231 1057.54191 0.42951 0.00022754 1.0661 0.00056481 1.4956 0.00079236 529.7786686858465 84.885 0.2798 84.384 84.226 84.505 -0.5015 21 11 2 0 0 0 0.72953 1 46425 46425 14.582 2.0501 1 1326200 4810 14920 3176 3251 5634 5634 0.015439097847320227 CPYDAKNVVM 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))PYDAKNVVM_ C(1)PYDAKNVVM C(80)PYDAKNVVM 0 1 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MSMS AL20221201_MKP_PDAC_01 4 598.7742919921875 2 598.775559 1195.53657 NaN NaN NaN NaN NaN NaN NaN 42.798 1 38.113 37.613 38.613 -4.6846 0 0 0 0.019195 1 25897 25897 79.596 54.197 1 4811 2379 3177 3252 5635 5635 236 -0.053381818600655606 CPYERDPWW 9 Unmodified _CPYERDPWW_ 0 0 0 ENST00000563829.5_1_15:75145696-75145942:-|nuORF ENST00000563829.5_1_15:75145696-75145942:-|nuORF ENST00000563829.5_1_15:75145696-75145942:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.26171875 2 626.266216 1250.51788 NaN NaN NaN NaN NaN NaN NaN 65.215 1 64.73 64.23 65.23 -0.48428 0 0 0 0.84369 1 35587 35587 2.3027 0.4585 1 4812 15370 3178 3253 5636 5636 -0.09735975439593858 CPYHSDRQLM 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))PYHSDRQLM_ C(1)PYHSDRQLM C(99)PYHSDRQLM 0 1 0 ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.1934509277344 3 436.193752 1305.55943 0.63161 0.0002755 -0.70776 -0.00030872 -0.076155 -3.3218E-05 436.1937532802022 27.073 0.26753 24.037 23.893 24.161 -3.0365 29 13 3 0 0 0 0.0049466 2 14947 14947;14981 98.73 69.983 1 15877000 4813 8488 3179 3254 5637;5638 5637 817 -0.08113162742597524 CPYHYVEVM 9 Carbamidomethyl (C),Oxidation (M) _C(Carbamidomethyl (C))PYHYVEVM(Oxidation (M))_ C(1)PYHYVEVM CPYHYVEVM(1) C(43)PYHYVEVM CPYHYVEVM(43) 0 1 1 nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3;ENST00000563051.1_1_16:780419-781044:-|nuORF;nc|ENSG00000103245|Q9H6Q4-2|CIAO3;ENST00000564285.1_1_16:780419-782521:-|nuORF nc|ENSG00000103245|Q9H6Q4-3|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2548217773438 2 607.254459 1212.49437 0.59593 0.00036188 1.0036 0.00060941 1.5995 0.00097129 607.2549588001278 39.21 0.49217 34.759 34.599 35.091 -4.4509 41 30 2 0 0 0 0.058206 1 23379 23379 42.968 20.232 1 9915300 4814 2116 3180 3255 5639 5639 214 368 -0.10338157268415671 CPYHYVEVM 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PYHYVEVM_ C(1)PYHYVEVM C(47)PYHYVEVM 0 1 0 nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3;ENST00000563051.1_1_16:780419-781044:-|nuORF;nc|ENSG00000103245|Q9H6Q4-2|CIAO3;ENST00000564285.1_1_16:780419-782521:-|nuORF nc|ENSG00000103245|Q9H6Q4-3|CIAO3 nc|ENSG00000103245|Q9H6Q4-3|CIAO3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.7593383789062 2 599.257002 1196.49945 0.22032 0.00013203 0.68232 0.00040888 0.90263 0.00054091 599.25733943953 52.46 0.27544 46.725 46.58 46.856 -5.7345 19 14 2 0 0 0 0.037958 1 33083 33083 46.921 6.9712 1 42906000 4815 2116 3180 3256 5640 5640 214 -0.09093853405829577 CPYIEFESF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))PYIEFESF_ C(1)PYIEFESF C(57)PYIEFESF 0 1 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2560424804688 2 596.254982 1190.49541 0.80556 0.00048032 -0.39439 -0.00023516 0.41117 0.00024516 596.2547872507433 86.575 0.45236 80.4 80.136 80.588 -6.1757 58 23 3 0 0 0 0.027803 2 57095 56974;57095 56.541 29.658 1 25884000 4816 7355 3181 3257 5641;5642 5642 718 -0.09221619627896871 CQANYMHVF 9 Unmodified _CQANYMHVF_ 0 0 0 REV__ENSG00000070950|ENST00000264926|RAD18 REV__ENSG00000070950|ENST00000264926|RAD18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7357177734375 2 556.736237 1111.45792 0.93524 0.00052068 -0.53176 -0.00029605 0.40349 0.00022464 556.735832943633 74.966 0.44612 74.489 74.23 74.676 -0.47714 37 18 3 0 0 0 0.54444 1 41124 41124 4.756 0.42677 1 3481300 + 4817 17487 3182 3258 5643 5643 -0.09334989374497127 CQARPAARPAL 11 Unmodified _CQARPAARPAL_ 0 0 0 REV__nc|ENSG00000014919|Q7KZN9-2|COX15 REV__nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2127075195312 3 385.213475 1152.6186 1.3935 0.00053678 -2.7798 -0.0010708 -1.3864 -0.00053406 385.5466695649468 30.838 0.17666 27.341 27.299 27.475 -3.497 11 7 2 0 0 0 0.557 1 17503 17503 13.519 7.6505 1 21467000 + 4818 17083 3183 3259 5644 5644 0.04839101333891449 CQDCGRAF 8 Unmodified _CQDCGRAF_ 0 0 0 ENSG00000185730|ENST00000330143|ZNF696;ENSG00000278129|ENST00000621650|ZNF8 ENSG00000185730|ENST00000330143|ZNF696;ENSG00000278129|ENST00000621650|ZNF8 ENSG00000278129|ENST00000621650|ZNF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.1799011230469 2 450.178555 898.342557 NaN NaN NaN NaN NaN NaN NaN 104.13 1 104.08 103.58 104.58 -0.048737 0 0 0 0.97444 1 57819 57819 0.69038 0 1 4819 9405;10930 3184 3260 5645 5645 -0.11068093505480192 CQDCKVTCCW 10 Unmodified _CQDCKVTCCW_ 0 0 0 REV__ENSG00000061492|ENST00000506684|WNT8A REV__ENSG00000061492|ENST00000506684|WNT8A MSMS AL20221201_MKP_PDAC_01 4 594.720458984375 2 594.718872 1187.42319 NaN NaN NaN NaN NaN NaN NaN 106.33 1 100.15 99.653 100.65 -6.1757 0 0 0 0.99091 1 71179 71179 1.6526 0.32309 1 + 4820 17331 3185 3261 5646 5646 -0.16302316569112918 CQDDWNENY 9 Unmodified _CQDDWNENY_ 0 0 0 ENSG00000184012|ENST00000332149|TMPRSS2;nc|ENSG00000184012|O15393-2|TMPRSS2 ENSG00000184012|ENST00000332149|TMPRSS2 ENSG00000184012|ENST00000332149|TMPRSS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.4752197265625 3 396.141711 1185.4033 NaN NaN NaN NaN NaN NaN NaN 57.634 1 57.634 57.134 58.134 0 0 0 0 0.84021 1 32075 32075 2.7352 0.82882 1 4821 9216 3186 3262 5647 5647 -0.18198329712231498 CQFEELNCPP 10 Unmodified _CQFEELNCPP_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8326721191406 3 393.83182 1178.47363 NaN NaN NaN NaN NaN NaN NaN 14.516 1 14.516 14.016 15.016 0 0 0 0 1.0029 1 6906 6906 0.12286 0.039514 1 + 4822 19993 3187 3263 5648 5648 -0.10846747648110977 CQHGVYGRLV 10 Unmodified _CQHGVYGRLV_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;nc|ENSG00000150712|Q9C0I1-3|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8638916015625 3 377.862442 1130.5655 0.90247 0.00034101 -0.64912 -0.00024528 0.25335 9.5733E-05 377.8622238102732 27.89 0.37976 24.742 24.587 24.967 -3.1482 33 20 2 0 0 0 0.62068 2 15446 15446;15564 5.7834 1.2546 1 27790000 4823 6069 3188 3264 5649;5650 5649 0.005437235512317784 CQHHVDYI 8 Unmodified _CQHHVDYI_ 0 0 0 REV__ENSG00000151388|ENST00000504830|ADAMTS12 REV__ENSG00000151388|ENST00000504830|ADAMTS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7869262695312 2 507.726726 1013.4389 NaN NaN NaN NaN NaN NaN NaN 61.222 1 61.222 60.722 61.722 0 0 0 0 0.97444 1 34137 34137 2.5775 0 1 + 4824 21065 3189 3265 5651 5651 -0.06728202673889427 CQIQSWIYHL 10 Unmodified _CQIQSWIYHL_ 0 0 0 REV__nc|ENSG00000147573|Q9BYV6-3|TRIM55 REV__nc|ENSG00000147573|Q9BYV6-3|TRIM55 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8170166015625 2 645.818615 1289.62268 0.75956 0.00049054 -2.0022 -0.0012931 -1.2426 -0.00080252 646.3191540939811 91.426 0.32521 85.251 85.076 85.401 -6.1757 27 17 2 0 0 0 0.085354 1 60428 60428 49.933 13.806 1 8491700 + 4825 29692 3190 3266 5652 5652 -0.010548539630462983 CQLRDFCSAN 10 Unmodified _CQLRDFCSAN_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 ENSG00000204301|ENST00000375023|NOTCH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7471313476562 2 578.747333 1155.48011 0.36075 0.00020878 -0.85726 -0.00049614 -0.49651 -0.00028736 578.7467176792894 26.399 0.3673 23.447 23.23 23.597 -2.9511 33 19 2 0 0 0 0.63399 1 14483 14483 9.3831 1.2276 1 11364000 4826 10263 3191 3267 5653 5653 -0.09140809696714314 CQQKCCCQKQC 11 Unmodified _CQQKCCCQKQC_ 0 0 0 nc|ENSG00000284643|A0A286YFB4|SCYGR2;nc|ENSG00000284629|A0A286YEY9|SCYGR1;nc|ENSG00000284704|A0A286YF60|SCYGR3;nc|ENSG00000284631|A0A286YEV6|SCYGR4;nc|ENSG00000284622|A0A286YEX9|SCYGR10;nc|ENSG00000284635|A0A286YFG1|SCYGR8 nc|ENSG00000284643|A0A286YFB4|SCYGR2 nc|ENSG00000284643|A0A286YFB4|SCYGR2 MSMS AL20221201_MKP_PDAC_01 4 434.8340759277344 3 434.834184 1301.48072 NaN NaN NaN NaN NaN NaN NaN 23.134 1 20.356 19.856 20.856 -2.7784 0 0 0 0.93933 1 12499 12499 1.2148 0.14337 1 4827 16614 3192 3268 5654 5654 -0.1579579763520087 CQRMLCPRM 9 Unmodified _CQRMLCPRM_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MSMS AL20221201_MKP_PDAC_01 4 379.8434753417969 3 379.84312 1136.50753 NaN NaN NaN NaN NaN NaN NaN 12.975 1 10.493 9.9927 10.993 -2.482 0 0 0 0.84564 1 6569 6569 1.0715 0 1 4828 1015 3193 3269 5655 5655 -0.05526320961689635 CQSSHRHLFL 10 Unmodified _CQSSHRHLFL_ 0 0 0 REV__ENST00000376834.7_1_9:77611421-77611472:-|nuORF REV__ENST00000376834.7_1_9:77611421-77611472:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2088928222656 3 409.87323 1226.59786 1.1307 0.00046343 0.47565 0.00019495 1.6063 0.00065839 410.2080814756184 32.177 0.74398 28.321 28.218 28.961 -3.8562 52 41 2 0 0 0 0.66569 1 18565 18565 3.5871 0 1 17832000 + 4829 26232 3194 3270 5656 5656 -0.006374890457664151 CRAEDGGFSPV 11 Unmodified _CRAEDGGFSPV_ 0 0 0 nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG nc|ENSG00000042832|P01266-2|TG nc|ENSG00000042832|P01266-2|TG MSMS AL20221201_MKP_PDAC_01 4 379.8389587402344 3 379.837962 1136.49206 NaN NaN NaN NaN NaN NaN NaN 40.046 1 35.516 35.016 36.016 -4.5294 0 0 0 0.82644 1 23860 23860 8.7518 3.3491 1 4830 666 3195 3271 5657 5657 -0.07072869681883276 CRCHSCCCC 9 Unmodified _CRCHSCCCC_ 0 0 0 ENSG00000197191|ENST00000650725|CYSRT1 ENSG00000197191|ENST00000650725|CYSRT1 ENSG00000197191|ENST00000650725|CYSRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.1356506347656 2 509.136138 1016.25772 NaN NaN NaN NaN NaN NaN NaN 23.414 1 23.435 22.935 23.935 0.021185 0 0 0 0.8622 1 12060 12060 0 0 1 4831 9926 3196 3272 5658 5658 -0.2497556990126668 CRDDFEVEF 9 Unmodified _CRDDFEVEF_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.23876953125 2 580.239864 1158.46517 0.16741 9.7137E-05 -2.1805 -0.0012652 -2.0131 -0.0011681 580.2386282681863 64.928 0.37375 64.928 64.719 65.093 0 39 17 3 0 0 0 0.36964 1 36175 36175 13.906 5.1606 1 6237500 + 4832 17558 3197 3273 5659 5659 -0.10771978293064421 CRDDFEVEF 9 Unmodified _CRDDFEVEF_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2384643554688 2 580.239864 1158.46517 0.19467 0.00011295 -2.3447 -0.0013605 -2.1501 -0.0012476 580.2385166237224 65.448 0.26716 64.964 64.814 65.081 -0.48428 29 12 3 0 0 0 0.19127 1 35703 35703 24.021 6.9077 1 7511300 + 4833 17558 3197 3273 5660 5660 -0.10771978293064421 CRDDIFYIL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))RDDIFYIL_ C(1)RDDIFYIL C(58)RDDIFYIL 0 1 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.2991333007812 2 607.797349 1213.58014 0.4009 0.00024366 -0.88388 -0.00053722 -0.48299 -0.00029356 607.797094954985 98.624 0.15499 92.449 92.365 92.52 -6.1757 33 11 4 0 0 0 0.025842 1 65417 65417 57.722 40.609 1 138400000 4834 4995 3198 3274 5661 5661 516 -0.018102490912724534 CREDCWPAF 9 Unmodified _CREDCWPAF_ 0 0 0 REV__ENSG00000253958|ENST00000519106|CLDN23 REV__ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7265625 2 563.725869 1125.43719 0.51829 0.00029218 0.30492 0.00017189 0.82321 0.00046407 563.7260292111166 66.642 0.21349 66.642 66.557 66.77 0 15 9 2 0 0 0 0.55144 1 37169 37169 4.3292 0 1 1004000 + 4835 24517 3199 3275 5662 5662 -0.12051579754165687 CREKSDDENF 10 Unmodified _CREKSDDENF_ 0 0 0 ENST00000583752.1_1_17:38524217-38524595:+|nuORF ENST00000583752.1_1_17:38524217-38524595:+|nuORF ENST00000583752.1_1_17:38524217-38524595:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8408203125 2 621.756409 1241.49827 0.54204 0.00033702 0.66394 0.00041281 1.206 0.00074983 621.7561329503842 101.6 0.10976 95.425 95.373 95.483 -6.1757 21 5 5 0 0 0 0.66569 1 68148 68148 6.7232 0 1 23367000 4836 15590 3200 3276 5663 5663 -0.11282396241017523 CRFDQLRQY 9 Unmodified _CRFDQLRQY_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.3018188476562 2 614.798214 1227.58188 0.30451 0.00018721 -0.61612 -0.00037879 -0.31161 -0.00019158 615.3001856834338 35.832 0.416 35.832 35.594 36.01 0 60 20 4 0 0 0 0.18144 1 18885 18885 20.454 5.2051 1 12839000 + 4837 24644 3201 3277 5664 5664 -0.02281195282648696 CRFLCYFCRIS 11 Unmodified _CRFLCYFCRIS_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.8278198242188 2 705.827603 1409.64065 0.36098 0.00025479 0.33022 0.00023308 0.6912 0.00048787 705.8280732186502 49.811 0.25418 49.811 49.629 49.883 0 24 11 3 0 0 0 0.68427 1 27426 27426 5.7319 0 1 2844300 4838 9779;10169;10115 3202 3278 5665 5665 -0.04778178304195535 CRFLYMFL 8 Unmodified _CRFLYMFL_ 0 0 0 REV__ENST00000370449.8_1_10:101594266-101595875:+|nuORF REV__ENST00000370449.8_1_10:101594266-101595875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2734375 2 546.772091 1091.52963 0.015086 8.2484E-06 -3.2552 -0.0017799 -3.2401 -0.0017716 547.2722997224793 35.084 0.30901 35.112 34.924 35.233 0.027401 21 13 2 0 0 0 0.76859 1 18493 18493 11.114 1.7313 1 1133800 + 4839 26058 3203 3279 5666 5666 -0.012474499499603553 CRGKWGVFMP 10 Unmodified _CRGKWGVFMP_ 0 0 0 REV__ENST00000515010.5_1_5:39203051-39203108:-|nuORF REV__ENST00000515010.5_1_5:39203051-39203108:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1958618164062 3 394.196656 1179.56814 NaN NaN NaN NaN NaN NaN NaN 27.305 1 27.305 26.805 27.805 0 0 0 0 0.96981 1 14063 14063 1.9064 0 1 + 4840 28204 3204 3280 5667 5667 -0.01446144315445963 CRGQTTCRGSC 11 Unmodified _CRGQTTCRGSC_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.877197265625 3 391.163687 1170.46923 0.079375 3.1049E-05 -0.62195 -0.00024329 -0.54258 -0.00021224 391.1634988256533 51.826 0.26565 51.767 51.651 51.917 -0.058918 19 12 2 0 0 0 0.30594 1 28065 28065 0.92553 0.22787 1 1930100 4841 4818 3205 3281 5668 5668 -0.10918535342648283 CRIEEAGQMAF 11 Unmodified _CRIEEAGQMAF_ 0 0 0 REV__CON__Q2TBQ1 REV__CON__Q2TBQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.7603149414062 2 627.783915 1253.55328 0.1824 0.00011451 -1.5882 -0.00099703 -1.4058 -0.00088253 627.7838046252244 56.703 0.42635 56.703 56.474 56.9 0 67 18 6 0 0 0 0.71036 1 31442 31442 3.2813 1.2216 1 11691000 + + 4842 16871 3206 3282 5669 5669 -0.06335680974098068 CRIGSPVYNFF 11 Unmodified _CRIGSPVYNFF_ 0 0 0 REV__nc|ENSG00000141076|Q969X6-2|UTP4 REV__nc|ENSG00000141076|Q969X6-2|UTP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8818969726562 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 16.776 1 16.781 16.281 17.281 0.0050564 0 0 0 0.94184 1 8427 8427 0.40827 0 1 + 4843 20516 3207 3283 5670 5670 -0.01606853963062349 CRIIAEAPQ 9 Unmodified _CRIIAEAPQ_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7655944824219 2 500.765852 999.51715 0.17928 8.9775E-05 0.016243 8.1341E-06 0.19552 9.7909E-05 500.7656616890087 79.757 0.353 79.812 79.577 79.93 0.054977 34 13 3 0 0 0 0.55775 1 44125 44125 3.9444 0.3479 1 4421800 4844 2166 3208 3284 5671 5671 0.01737229911339 CRKEGWHQP 9 Unmodified _CRKEGWHQP_ 0 0 0 ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENST00000555222.5_1_12:57490357-57492756:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8513793945312 3 380.850425 1139.52945 NaN NaN NaN NaN NaN NaN NaN 0.034674 1 0.034674 -0.46533 0.53467 0 0 0 0 0.85798 1 17 17 0.23584 0 1 4845 15223 3209 3285 5672 5672 -0.03473733625605746 CRKSPDLALMY 11 Unmodified _CRKSPDLALMY_ 0 0 0 REV__nc|ENSG00000065883|Q14004-2|CDK13 REV__nc|ENSG00000065883|Q14004-2|CDK13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8853759765625 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 33.837 1 33.837 33.337 34.337 0 0 0 0 0.94293 1 17781 17781 0.40827 0.041592 1 + 4846 17390 3210 3286 5673 5673 0.0006205547374520393 CRLRRQLRKRL 11 Unmodified _CRLRRQLRKRL_ 0 0 0 ENSG00000178015|ENST00000380007|GPR150 ENSG00000178015|ENST00000380007|GPR150 ENSG00000178015|ENST00000380007|GPR150 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2565002441406 3 499.984289 1496.93104 -0.57092 -0.00028545 0.76343 0.0003817 0.19251 9.6251E-05 500.31936151611666 103.35 0.14761 103.3 103.21 103.36 -0.04792 10 5 2 0 0 0 0.74442 1 57365 57365 0.08335 0.010087 1 1179200 4847 8720 3211 3287 5674 5674 0.20244849798336872 CRMKINTKHY 10 Unmodified _CRMKINTKHY_ 0 0 0 REV__nc|ENSG00000268916|Q9Y5P2-2|CSAG2 REV__nc|ENSG00000268916|Q9Y5P2-2|CSAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.8909301757812 3 431.890004 1292.64818 -0.29458 -0.00012723 -0.084139 -3.6339E-05 -0.37872 -0.00016356 431.8914761891452 21.349 0.48853 21.349 21.182 21.67 0 100 66 2 0 0 0 0.71123 1 10971 10971 0.69767 0 1 1123000 + 4848 24620 3212 3288 5675 5675 0.013562972877480206 CRMSSWRW 8 Unmodified _CRMSSWRW_ 0 0 0 ENST00000404127.6_1_X:153173185-153186849:-|nuORF ENST00000404127.6_1_X:153173185-153186849:-|nuORF ENST00000404127.6_1_X:153173185-153186849:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2513427734375 2 556.249846 1110.48514 NaN NaN NaN NaN NaN NaN NaN 16.607 1 16.612 16.112 17.112 0.0050564 0 0 0 0.97444 1 8335 8335 0.69038 0 1 4849 12912 3213 3289 5676 5676 -0.06568461043434581 CRNAFRLK 8 Unmodified _CRNAFRLK_ 0 0 0 nc|ENSG00000189042|Q8N184-2|ZNF567;nc|ENSG00000189042|Q8N184-1|ZNF567;ENSG00000189042|ENST00000682579|ZNF567 nc|ENSG00000189042|Q8N184-2|ZNF567 nc|ENSG00000189042|Q8N184-2|ZNF567 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2805480957031 2 504.282003 1006.54945 0.14395 7.2594E-05 -1.4829 -0.00074781 -1.339 -0.00067521 504.2804365759766 45.498 0.27956 45.47 45.302 45.582 -0.028011 22 14 2 0 0 0 0.80676 1 24425 24425 2.5775 0 1 10765000 4850 9721 3214 3290 5677 5677 0.04644062105001012 CRNCDQWPEWW 11 Unmodified _CRNCDQWPEWW_ 0 0 0 REV__ENSG00000177558|ENST00000324675|FAM187B REV__ENSG00000177558|ENST00000324675|FAM187B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.5400390625 3 508.204539 1521.59179 0.64078 0.00032565 0.65622 0.00033349 1.297 0.00065914 508.5395496898797 45.876 0.32135 45.876 45.722 46.044 0 23 15 3 0 0 0 0.73992 1 25023 25023 0.50596 0 1 6260700 + 4851 22992 3215 3291 5678 5678 -0.14814375339597063 CRNCDQWPEWW 11 Unmodified _CRNCDQWPEWW_ 0 0 0 REV__ENSG00000177558|ENST00000324675|FAM187B REV__ENSG00000177558|ENST00000324675|FAM187B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 508.204539 1521.59179 0.10627 5.4005E-05 1.3256 0.00067368 1.4319 0.00072768 508.20517535830464 46.253 0.21445 45.916 45.762 45.976 -0.33664 0.019746 0.00024529 NaN 0.50596 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4242700 + 4852 22992 3215 3291 -0.14814375339597063 CRNIDIPEL 9 Unmodified _CRNIDIPEL_ 0 0 0 ENST00000494909.5_1_2:114398284-114398608:+|nuORF ENST00000494909.5_1_2:114398284-114398608:+|nuORF ENST00000494909.5_1_2:114398284-114398608:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.1862182617188 3 358.186703 1071.53828 NaN NaN NaN NaN NaN NaN NaN 44.441 1 39.589 39.089 40.089 -4.852 0 0 0 0.82739 1 27136 27136 2.4985 1.1688 1 4853 14341 3216 3292 5679 5679 0.00537195220204012 CRPAGQPI 8 Unmodified _CRPAGQPI_ 0 0 0 REV__ENST00000413009.6_1_4:8418108-8442448:-|nuORF REV__ENST00000413009.6_1_4:8418108-8442448:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 421.2217712402344 2 421.22108 840.427607 NaN NaN NaN NaN NaN NaN NaN 94.063 1 87.887 87.387 88.387 -6.1757 0 0 0 0.97348 1 62293 62293 5.7604 0 1 + 4854 26729 3217 3293 5680 5680 0.0010102002262328824 CRPDEHPGDLS 11 Unmodified _CRPDEHPGDLS_ 0 0 0 REV__nc|ENSG00000162946|Q9NRI5-2|DISC1;REV__nc|ENSG00000162946|Q9NRI5-3|DISC1 REV__nc|ENSG00000162946|Q9NRI5-2|DISC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5135803222656 3 409.180388 1224.51934 0.73686 0.00030151 2.1899 0.00089605 2.9267 0.0011976 409.18273088271246 18.003 0.31243 15.407 15.246 15.559 -2.5964 52 23 4 0 0 0 0.6889 1 9453 9453 2.4348 0.18206 1 3401900 + 4855 21709;29741 3218 3294 5681 5681 -0.08394386141480936 CRPKPGGA 8 Unmodified _CRPKPGGA_ 0 0 0 REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2061157226562 2 393.207973 784.401392 -0.24066 -9.4631E-05 -1.1481 -0.00045142 -1.3887 -0.00054605 393.20767630765823 35.782 0.34938 35.807 35.663 36.012 0.024971 34 16 3 0 0 0 0.80722 2 18917 18917;19022 2.3027 2.3027 1 4413400 + 4856 28230 3219 3295 5682;5683 5682 0.0005675085116081391 CRRFQQLK 8 Unmodified _CRRFQQLK_ 0 0 0 ENSG00000163632|ENST00000295896|C3orf49 ENSG00000163632|ENST00000295896|C3orf49 ENSG00000163632|ENST00000295896|C3orf49 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2018737792969 3 360.202799 1077.58657 NaN NaN NaN NaN NaN NaN NaN 15.281 1 15.267 14.767 15.767 -0.014067 0 0 0 0.97444 1 7493 7493 0.40072 0 1 4857 7035 3220 3296 5684 5684 0.05087733650748305 CRRFRCFPF 9 Unmodified _CRRFRCFPF_ 0 0 0 ENST00000350997.11_1_11:61567735-61567927:-|nuORF ENST00000350997.11_1_11:61567735-61567927:-|nuORF ENST00000350997.11_1_11:61567735-61567927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3008422851562 2 616.302413 1230.59027 0.62551 0.0003855 -1.0987 -0.0006771 -0.47315 -0.0002916 616.3018260306254 86.748 1.1243 86.245 85.393 86.517 -0.50318 55 45 2 0 0 0 0.58865 1 47011 47011 2.0598 0.21551 1 660120 4858 12045 3221 3297 5685 5685 -0.015799198470404008 CRRNRRFFHDF 11 Unmodified _CRRNRRFFHDF_ 0 0 0 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 777.8897094726562 2 777.386385 1552.75822 0.30228 0.00023499 0.54756 0.00042567 0.84984 0.00066065 777.387008777975 84.823 0.7151 78.647 78.242 78.957 -6.1757 159 41 5 0 0 0 0.73115 1 55551 55551 1.3295 0 1 257890000 4859 9766 3222 3298 5686 5686 0.003948586711203461 CRRRRYNRRER 11 Unmodified _CRRRRYNRRER_ 0 0 0 REV__ENST00000371361.3_1_10:96112804-96114802:-|nuORF REV__ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.9659423828125 3 540.966068 1619.87638 -0.1213 -6.5618E-05 -1.0618 -0.00057438 -1.1831 -0.00064 541.2995798071273 31.87 0.34291 31.74 31.548 31.891 -0.12915 27 13 3 0 0 0 0.7453 1 16621 16621 0 0 1 3953800 + 4860 26081 3223 3299 5687 5687 0.09123230979616892 CRRWRYWEYWS 11 Unmodified _CRRWRYWEYWS_ 0 0 0 ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2633666992188 3 564.261376 1689.7623 NaN NaN NaN NaN NaN NaN NaN 86.563 1 86.563 86.063 87.063 0 0 0 0 0.9435 1 47946 47946 0 0 1 4861 11543 3224 3300 5688 5688 -0.05499096625817401 CRRWRYWEYWS 11 Unmodified _CRRWRYWEYWS_ 0 0 0 ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 845.8900146484375 2 845.888426 1689.7623 NaN NaN NaN NaN NaN NaN NaN 87.305 1 87.305 86.805 87.805 0 0 0 0 0.9435 1 48347 48347 0 0 1 4862 11543 3224 3300 5689 5689 -0.05499096625817401 CRSNVVEHF 9 Unmodified _CRSNVVEHF_ 0 0 0 ENSG00000172362|ENST00000641921|OR5B12 ENSG00000172362|ENST00000641921|OR5B12 ENSG00000172362|ENST00000641921|OR5B12 MSMS AL20221201_MKP_PDAC_01 4 364.548583984375 3 364.174797 1089.50256 NaN NaN NaN NaN NaN NaN NaN 46.627 1 41.547 41.047 42.047 -5.0805 0 0 0 0.7453 1 28845 28845 4.897 0 1 4863 8207 3225 3301 5690 5690 -0.038608422367815365 CRSPYISPHI 10 Unmodified _CRSPYISPHI_ 0 0 0 REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5341491699219 3 391.534214 1171.58081 0.086779 3.3977E-05 -0.032362 -1.2671E-05 0.054416 2.1306E-05 391.5341124956243 38.762 0.26342 38.773 38.678 38.941 0.011456 23 12 2 0 0 0 0.66569 1 20637 20637 3.5871 1.3343 1 4133200 + 4864 25191 3226 3302 5691 5691 0.0018859034844354028 CRSRPRNVP 9 Unmodified _CRSRPRNVP_ 0 0 0 nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1;ENST00000393345.8_1_17:47486298-47490626:-|nuORF nc|ENSG00000167085|P35232-2|PHB1 nc|ENSG00000167085|P35232-2|PHB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5324096679688 3 362.197936 1083.57198 NaN NaN NaN NaN NaN NaN NaN 44.153 1 44.153 43.653 44.653 0 0 0 0 0.83329 1 24014 24014 2.086 1.1237 1 4865 7569 3227 3303 5692 5692 0.03353661502637806 CRTFPVTLIK 10 Unmodified _CRTFPVTLIK_ 0 0 0 REV__ENST00000592005.5_1_18:44497642-44497873:+|nuORF REV__ENST00000592005.5_1_18:44497642-44497873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3441772460938 2 589.341726 1176.6689 NaN NaN NaN NaN NaN NaN NaN 82.775 1 82.775 82.275 83.275 0 0 0 0 1.0024 1 45915 45915 0.40072 0 1 + 4866 29171 3228 3304 5693 5693 0.08763210939059718 CRVDDKVN 8 Unmodified _CRVDDKVN_ 0 0 0 ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1;ENST00000510566.1_1_4:41263775-41266241:+|nuORF ENST00000512419.5_1_4:41258929-41270087:+|nuORF ENST00000512419.5_1_4:41258929-41270087:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 474.7320251464844 2 474.732009 947.449465 NaN NaN NaN NaN NaN NaN NaN 22.83 1 20.052 19.552 20.552 -2.7784 0 0 0 0.92941 1 12307 12307 14.838 3.3436 1 4867 6316 3229 3305 5694 5694 -0.026362200194625984 CRVFKAPM 8 Unmodified _CRVFKAPM_ 0 0 0 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2490234375 2 476.248783 950.483013 NaN NaN NaN NaN NaN NaN NaN 74.407 1 74.407 73.907 74.907 0 0 0 0 0.97444 1 41404 41404 0.79363 0 1 + 4868 20538 3230 3306 5695 5695 0.005791102187458819 CRVLESFKIM 10 Unmodified _CRVLESFKIM_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2192687988281 3 409.219238 1224.63589 NaN NaN NaN NaN NaN NaN NaN 33.275 1 33.304 32.804 33.804 0.028934 0 0 0 0.99248 1 17500 17500 0.62683 0.12087 1 4869 2483 3231 3307 5696 5696 0.0325526082469878 CRYYGDHT 8 Unmodified _CRYYGDHT_ 0 0 0 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 REV__nc|ENSG00000163606|Q8TD46-3|CD200R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7089233398438 2 507.708534 1013.40251 0.31936 0.00016214 0.52522 0.00026666 0.84458 0.0004288 507.70871186176373 64.945 0.45017 64.945 64.719 65.169 0 38 20 2 0 0 0 0.80383 1 36252 36252 4.3292 4.3292 1 35743000 + 4870 21788 3232 3308 5697 5697 -0.10365079570613034 CSASVIYHY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))SASVIYHY_ C(1)SASVIYHY C(78)SASVIYHY 0 1 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2552490234375 2 550.247492 1098.48043 NaN NaN NaN NaN NaN NaN NaN 37.376 1 37.376 36.876 37.876 0 0 0 0 0.020354 1 19876 19876 77.984 53.964 1 4871 7643 3233 3309 5698 5698 741 -0.06487066705221878 CSCAAPTL 8 Unmodified _CSCAAPTL_ 0 0 0 REV__ENST00000524928.1_1_11:47436156-47436711:+|nuORF REV__ENST00000524928.1_1_11:47436156-47436711:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1684265136719 2 383.167124 764.319696 NaN NaN NaN NaN NaN NaN NaN 83.79 1 83.291 82.791 83.791 -0.49961 0 0 0 0.97444 1 45861 45861 0.69038 0 1 + 4872 28340 3234 3310 5699 5699 -0.07189112622961602 CSCCCCWWFCC 11 Unmodified _CSCCCCWWFCC_ 0 0 0 REV__RGS17|p.C31W|1|0.18|ENSG00000091844|chr6:153043926-153043926|A/C|missense_variant REV__RGS17|p.C31W|1|0.18|ENSG00000091844|chr6:153043926-153043926|A/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.6716918945312 2 673.674239 1345.33392 NaN NaN NaN NaN NaN NaN NaN 15.037 1 15.023 14.523 15.523 -0.014067 0 0 0 0.9435 1 7357 7357 0 0 1 + 4873 30088 3235 3311 5700 5700 -0.32492934116135075 CSCFWSQGLHT 11 Unmodified _CSCFWSQGLHT_ 0 0 0 REV__ENST00000596287.5_1_19:51301978-51302572:-|nuORF REV__ENST00000596287.5_1_19:51301978-51302572:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 634.29150390625 2 634.762983 1267.51141 0.50201 0.00031866 -1.4938 -0.00094823 -0.99183 -0.00062957 634.7617751105847 62.244 0.64034 56.068 55.782 56.422 -6.1757 56 35 2 0 0 0 0.28456 1 39981 39981 11.495 8.4995 1 36017000 + 4874 29218 3236 3312 5701 5701 -0.11164236662625626 CSCKKLAA 8 Unmodified _CSCKKLAA_ 0 0 0 ENST00000414198.5_1_3:18486636-18505828:+|nuORF ENST00000414198.5_1_3:18486636-18505828:+|nuORF ENST00000414198.5_1_3:18486636-18505828:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2117614746094 2 412.211866 822.40918 NaN NaN NaN NaN NaN NaN NaN 21.887 1 21.887 21.387 22.387 0 0 0 0 0.97444 1 11110 11110 0.79363 0 1 4875 13006 3237 3313 5702 5702 -0.009128579435923712 CSCPRCGAETL 11 Unmodified _CSCPRCGAETL_ 0 0 0 REV__ENSG00000135862|ENST00000258341|LAMC1 REV__ENSG00000135862|ENST00000258341|LAMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.4917907714844 3 380.492921 1138.45693 NaN NaN NaN NaN NaN NaN NaN 78.294 1 78.294 77.794 78.794 0 0 0 0 0.94165 1 43512 43512 0.45452 0 1 + 4876 20103 3238 3314 5703 5703 -0.10675571805700201 CSCQRRERKH 10 Unmodified _CSCQRRERKH_ 0 0 0 REV__ENST00000577628.5_1_18:47093831-47093894:+|nuORF REV__ENST00000577628.5_1_18:47093831-47093894:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8821411132812 3 434.88039 1301.61934 NaN NaN NaN NaN NaN NaN NaN 101.52 1 101.41 100.91 101.91 -0.11613 0 0 0 1.0029 1 55403 55403 0.12286 0.039514 1 + 4877 29034 3239 3315 5704 5704 -0.019404272886959006 CSCSFGDKHSD 11 Unmodified _CSCSFGDKHSD_ 0 0 0 REV__nc|ENSG00000184347|O75094-2|SLIT3 REV__nc|ENSG00000184347|O75094-2|SLIT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7839965820312 2 593.218605 1184.42266 0.51623 0.00030623 1.3379 0.00079368 1.8542 0.0010999 593.2190833439347 88.17 0.31079 87.666 87.536 87.847 -0.50423 24 13 3 0 0 0 0.29817 1 48166 48166 8.1555 4.559 1 662090 + 4878 23414 3240 3316 5705 5705 -0.16217696692956451 CSCSFGDKHSD 11 Unmodified _CSCSFGDKHSD_ 0 0 0 REV__nc|ENSG00000184347|O75094-2|SLIT3 REV__nc|ENSG00000184347|O75094-2|SLIT3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 593.218605 1184.42266 0.076513 4.5389E-05 1.9091 0.0011325 1.9856 0.0011779 593.7209045141637 87.686 0.12186 87.686 87.616 87.738 0 0.0097141 0.00057693 NaN 8.1555 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 388660 + 4879 23414 3240 3316 -0.16217696692956451 CSCTCPPGPL 10 Unmodified _CSCTCPPGPL_ 0 0 0 REV__ENSG00000283536|ENST00000635789|unknown REV__ENSG00000283536|ENST00000635789|unknown MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7472534179688 2 489.198099 976.381644 0.32702 0.00015998 1.5335 0.00075019 1.8605 0.00091017 489.198813467481 45.77 0.17469 45.77 45.644 45.819 0 14 8 2 0 0 0 0.23566 1 24919 24919 3.9444 0 1 4428500 + 4880 24693 3241 3317 5706 5706 -0.10749129266116597 CSDGTSNRDSF 11 Unmodified _CSDGTSNRDSF_ 0 0 0 nc|ENSG00000155307|Q9NSI8-3|SAMSN1;ENSG00000155307|ENST00000400566|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 MSMS AL20221201_MKP_PDAC_01 4 396.8252868652344 3 396.824381 1187.45132 NaN NaN NaN NaN NaN NaN NaN 59.734 1 53.619 53.119 54.119 -6.1147 0 0 0 0.93669 1 38379 38379 2.2527 0 1 4881 16286 3242 3318 5707 5707 -0.1349125579217798 CSELHTANNW 10 Unmodified _CSELHTANNW_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7506713867188 2 587.75093 1173.48731 0.030493 1.7922E-05 0.51014 0.00029983 0.54063 0.00031775 587.7513205963127 64.719 0.34857 64.719 64.587 64.936 0 49 16 4 0 0 0 0.69848 1 36174 36174 1.1933 0 1 2694900 + 4882 29698 3243 3319 5708 5708 -0.09249753824678919 CSETFQRPY 9 Unmodified _CSETFQRPY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5025024414062 3 377.502691 1129.48624 -0.2572 -9.7095E-05 1.166 0.00044018 0.90883 0.00034309 377.5030232342337 48.901 0.47468 48.901 48.761 49.236 0 33 12 3 0 0 0 0.5029 1 26837 26837 4.5289 1.5336 1 23463000 4883 8367 3244 3320 5709 5709 -0.07331968193557259 CSEYAFVF 8 Unmodified _CSEYAFVF_ 0 0 0 ENST00000375344.7_1_9:97222409-97222715:+|nuORF ENST00000375344.7_1_9:97222409-97222715:+|nuORF ENST00000375344.7_1_9:97222409-97222715:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2072143554688 2 483.207304 964.400055 NaN NaN NaN NaN NaN NaN NaN 60.99 1 60.5 60 61 -0.48932 0 0 0 0.97444 1 33218 33218 2.8892 0.31174 1 4884 12474 3245 3321 5710 5710 -0.08356928028263155 CSFCQSVL 8 Unmodified _CSFCQSVL_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.6947937011719 2 443.693506 885.37246 NaN NaN NaN NaN NaN NaN NaN 53.992 1 53.992 53.492 54.492 0 0 0 0 0.93587 1 29955 29955 13.508 3.3245 1 4885 4279 3246 3322 5711 5711 -0.07481154560150571 CSHFERLPHQ 10 Unmodified _CSHFERLPHQ_ 0 0 0 REV__ENST00000561433.5_1_15:90777436-90779332:+|nuORF REV__ENST00000561433.5_1_15:90777436-90779332:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2971801757812 2 627.295839 1252.57712 NaN NaN NaN NaN NaN NaN NaN 95.469 1 95.469 94.969 95.969 0 0 0 0 1.0024 1 52768 52768 0.40072 0 1 + 4886 28840 3247 3323 5712 5712 -0.03906079425428288 CSHFFQSLYG 10 Unmodified _CSHFFQSLYG_ 0 0 0 ENSG00000204859|ENST00000377674|ZBTB48 ENSG00000204859|ENST00000377674|ZBTB48 ENSG00000204859|ENST00000377674|ZBTB48 MSMS AL20221201_MKP_PDAC_01 4 396.8433532714844 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 0.62338 1 -1.8586 -2.3586 -1.3586 -2.482 0 0 0 1.0024 1 329 329 0.13989 0.056541 1 4887 10334 3248 3324 5713 5713 -0.07927377813871317 CSHGQPFLEQ 10 Unmodified _CSHGQPFLEQ_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5062866210938 3 382.506324 1144.49714 0.53447 0.00020444 0.37316 0.00014274 0.90763 0.00034717 382.5063026413769 62.841 0.31661 62.355 62.185 62.501 -0.48617 21 15 2 0 0 0 0.67033 1 34231 34231 3.3196 0 1 9306200 + 4888 20051 3249 3325 5714 5714 -0.06932565819283809 CSIQESAPV 9 Unmodified _CSIQESAPV_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2218322753906 2 467.220943 932.427332 NaN NaN NaN NaN NaN NaN NaN 21.933 1 21.933 21.433 22.433 0 0 0 0 0.6557 1 11135 11135 10.824 0 1 + 4889 17475 3250 3326 5715 5715 -0.04158444487882207 CSKLAEHFLI 10 Unmodified _CSKLAEHFLI_ 0 0 0 REV__ENST00000389045.7_1_2:230672980-230673052:-|nuORF REV__ENST00000389045.7_1_2:230672980-230673052:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2255249023438 3 387.542598 1159.60597 -0.0046543 -1.8038E-06 0.55756 0.00021608 0.55291 0.00021428 387.54290214158857 37.742 0.26015 37.742 37.586 37.846 0 20 12 2 0 0 0 0.23986 1 20087 20087 0.77653 0.37582 1 1641100 + 4890 26359 3251 3327 5716 5716 0.03254645151037039 CSLFKPLDE 9 Unmodified _CSLFKPLDE_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1748657226562 3 351.175804 1050.50558 1.1691 0.00041057 -1.4124 -0.000496 -0.24326 -8.5427E-05 351.17526832347045 38.508 0.35641 34.139 33.916 34.273 -4.3689 41 22 2 0 0 0 0.46501 1 22677 22677 9.544 5.2147 1 13609000 4891 1540 3252 3328 5717 5717 -0.01765011902648439 CSNKKALLKF 10 Unmodified _CSNKKALLKF_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656208-34656274:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MSMS AL20221201_MKP_PDAC_01 4 384.5579528808594 3 384.55836 1150.65325 NaN NaN NaN NaN NaN NaN NaN 40.153 1 35.624 35.124 36.124 -4.5294 0 0 0 0.8671 1 23945 23945 5.4027 0 1 4892 8595 3253 3329 5718 5718 0.08394924422009353 CSNNWLQF 8 Unmodified _CSNNWLQF_ 0 0 0 REV__ENSG00000125823|ENST00000347397|CSTL1 REV__ENSG00000125823|ENST00000347397|CSTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2216796875 2 506.221277 1010.428 -0.8993 -0.00045524 1.0064 0.00050948 0.10714 5.4235E-05 506.2221342508303 77.366 0.63503 76.884 76.58 77.215 -0.4826 123 29 7 0 0 0 0.80722 1 42242 42242 2.3027 0 1 11515000 + 4893 19517 3254 3330 5719 5719 -0.07679605048167559 CSPACCWHCCK 11 Unmodified _CSPACCWHCCK_ 0 0 0 ENST00000468416.1_1_5:66904622-66904778:+|nuORF ENST00000468416.1_1_5:66904622-66904778:+|nuORF ENST00000468416.1_1_5:66904622-66904778:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.7129516601562 2 620.713067 1239.41158 NaN NaN NaN NaN NaN NaN NaN 12.407 1 12.419 11.919 12.919 0.012355 0 0 0 0.9435 1 6118 6118 0 0 1 4894 13811 3255 3331 5720 5720 -0.19854836864101344 CSPQNCSGLRT 11 Unmodified _CSPQNCSGLRT_ 0 0 0 ENSG00000107518|ENST00000355044|ATRNL1;ATRNL1|p.Q1115Lfs*8|1|0.26|ENSG00000107518|chr10:115461957-115461964|TTATCAAT/-|frameshift_variant ENSG00000107518|ENST00000355044|ATRNL1 ENSG00000107518|ENST00000355044|ATRNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.1746215820312 3 389.174469 1164.50158 0.58875 0.00022912 0.65598 0.00025529 1.2447 0.00048442 389.1747257908561 39.996 0.39123 35.467 35.26 35.652 -4.5294 73 33 3 0 0 0 0.65846 1 23734 23734 4.1166 0 1 125290000 4895 41 3256 3332 5721 5721 -0.07409424668026077 CSPQNCSGLRT 11 Unmodified _CSPQNCSGLRT_ 0 0 0 ENSG00000107518|ENST00000355044|ATRNL1;ATRNL1|p.Q1115Lfs*8|1|0.26|ENSG00000107518|chr10:115461957-115461964|TTATCAAT/-|frameshift_variant ENSG00000107518|ENST00000355044|ATRNL1 ENSG00000107518|ENST00000355044|ATRNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.17529296875 3 389.174469 1164.50158 0.89512 0.00034836 0.70518 0.00027444 1.6003 0.0006228 389.17480114477286 40.37 1.2378 35.84 35.595 36.833 -4.5294 214 81 4 0 0 0 0.65846 1 24005 24005 4.1166 0.17223 1 83299000 4896 41 3256 3332 5722 5722 -0.07409424668026077 CSQRRHSRGLR 11 Unmodified _CSQRRHSRGLR_ 0 0 0 REV__nc|ENSG00000125735|O43557-2|TNFSF14 REV__nc|ENSG00000125735|O43557-2|TNFSF14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.5793151855469 3 452.577699 1354.71127 NaN NaN NaN NaN NaN NaN NaN 20.87 1 20.898 20.398 21.398 0.028357 0 0 0 0.94313 1 10574 10574 0.073264 0 1 + 4897 19511 3257 3333 5723 5723 0.048099991199933356 CSQSVSENDF 10 Unmodified _CSQSVSENDF_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2 ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2186279296875 2 558.219128 1114.4237 0.20652 0.00011528 1.0353 0.00057795 1.2419 0.00069323 558.2194880055663 71.749 0.39182 71.749 71.574 71.966 0 39 17 3 0 0 0 0.67033 1 39942 39942 6.2058 0 1 2419100 4898 7465 3258 3334 5724 5724 -0.12893159052396186 CSRKLMDKQTF 11 Unmodified _CSRKLMDKQTF_ 0 0 0 ENST00000563766.5_1_16:22320737-22320929:+|nuORF ENST00000563766.5_1_16:22320737-22320929:+|nuORF ENST00000563766.5_1_16:22320737-22320929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2317504882812 3 452.896935 1355.66898 0.72487 0.00032829 1.3673 0.00061926 2.0922 0.00094756 452.898028148488 44.371 0.31747 39.519 39.371 39.688 -4.852 63 23 3 0 0 0 0.47965 1 26972 26972 14.171 0 1 43640000 4899 15368 3259 3335 5725 5725 0.00536842876749688 CSRKPVAA 8 Unmodified _CSRKPVAA_ 0 0 0 ENST00000456775.1_1_7:116593398-116593683:-|nuORF ENST00000456775.1_1_7:116593398-116593683:-|nuORF ENST00000456775.1_1_7:116593398-116593683:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.2279052734375 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 48.844 1 43.448 42.948 43.948 -5.3961 0 0 0 0.83301 1 30456 30456 21.747 5.9784 1 4900 13602 3260 3336 5726 5726 0.021253065396763304 CSRLQWHHLPL 11 Unmodified _CSRLQWHHLPL_ 0 0 0 ENST00000436518.5_1_22:20117014-20127004:+|nuORF;ENST00000334554.11_1_22:20119331-20127004:+|nuORF ENST00000436518.5_1_22:20117014-20127004:+|nuORF ENST00000436518.5_1_22:20117014-20127004:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.9102478027344 3 463.911796 1388.71356 -0.2997 -0.00013903 0.051108 2.371E-05 -0.24859 -0.00011533 463.91040780470615 56.765 0.4478 56.28 56.136 56.583 -0.48554 33 21 2 0 0 0 0.65846 1 30867 30867 6.6235 3.5512 1 2721700 4901 11886 3261 3337 5727 5727 0.034750348050920365 CSSARPFRFNL 11 Unmodified _CSSARPFRFNL_ 0 0 0 REV__ENST00000397110.6_1_22:37576398-37578231:-|nuORF REV__ENST00000397110.6_1_22:37576398-37578231:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.221923828125 3 433.220518 1296.63972 NaN NaN NaN NaN NaN NaN NaN 79.598 1 73.423 72.923 73.923 -6.1757 0 0 0 0.81193 1 52172 52172 6.2344 0 1 + 4902 26530 3262 3338 5728 5728 0.0032706664278521203 CSSPEPMADRL 11 Unmodified _CSSPEPMADRL_ 0 0 0 nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3 nc|ENSG00000184347|O75094-2|SLIT3 nc|ENSG00000184347|O75094-2|SLIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5198669433594 3 402.514491 1204.52164 0.18013 7.2506E-05 -0.42908 -0.00017271 -0.24895 -0.00010021 402.514399315418 38.244 0.65201 38.244 37.925 38.577 0 148 43 4 0 0 0 0.7326 1 20319 20319 0.40827 0.40827 1 125080000 4903 9247 3263 3339 5729 5729 -0.07243673728044087 CSSSCCCC 8 Unmodified _CSSSCCCC_ 0 0 0 ENST00000485324.1_1_X:152959425-152959824:+|nuORF ENST00000485324.1_1_X:152959425-152959824:+|nuORF ENST00000485324.1_1_X:152959425-152959824:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.7669372558594 2 398.083563 794.152572 NaN NaN NaN NaN NaN NaN NaN 109.51 1 103.33 102.83 103.83 -6.1757 0 0 0 0.97444 1 73131 73131 0 0 1 4904 14167 3264 3340 5730 5730 -0.2527378782604046 CSSTDVLSCI 10 Unmodified _CSSTDVLSCI_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7791137695312 2 514.225368 1026.43618 0.019272 9.9101E-06 -0.69361 -0.00035667 -0.67434 -0.00034676 514.2248863055969 69.21 0.37067 68.73 68.528 68.899 -0.48071 44 15 4 0 0 0 0.23634 1 37742 37742 6.7232 1.9672 1 2486300 4905 670 3265 3341 5731 5731 -0.0759783891371626 CSSTSCCSTI 10 Unmodified _CSSTSCCSTI_ 0 0 0 REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1 REV__nc|ENSG00000205629|Q9UIC8-3|LCMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.1792907714844 2 496.180103 990.345653 NaN NaN NaN NaN NaN NaN NaN 77.71 1 77.71 77.21 78.21 0 0 0 0 0.96981 1 43201 43201 3.9444 1.0552 1 + 4906 24232 3266 3342 5732 5732 -0.14990631233649765 CSTFTKWF 8 Unmodified _CSTFTKWF_ 0 0 0 REV__ENSG00000157005|ENST00000287641|SST REV__ENSG00000157005|ENST00000287641|SST MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7937622070312 2 510.236396 1018.45824 0.57203 0.00029187 0.18057 9.2135E-05 0.75261 0.00038401 510.23586101196264 32.67 0.2896 28.813 28.635 28.924 -3.8562 18 14 2 0 0 0 8.7369 1 18539 18539 12.532 6.7711 1 5856000 + 4907 21358 3267 3343 5733 5733 -0.05025246382979276 CSWDGDGEEGL 11 Unmodified _CSWDGDGEEGL_ 0 0 0 REV__ENST00000394464.6_1_5:142659615-142659681:-|nuORF REV__ENST00000394464.6_1_5:142659615-142659681:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.8134460449219 3 389.813482 1166.41862 NaN NaN NaN NaN NaN NaN NaN 16.73 1 14.173 13.673 14.673 -2.557 0 0 0 0.94148 1 8687 8687 1.4551 0 1 + 4908 26446 3268 3344 5734 5734 -0.15793462915007694 CTCDWPNGEL 10 Unmodified _CTCDWPNGEL_ 0 0 0 REV__ENSG00000179542|ENST00000356928|SLITRK4 REV__ENSG00000179542|ENST00000356928|SLITRK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2198486328125 2 569.220617 1136.42668 NaN NaN NaN NaN NaN NaN NaN 62.895 1 62.895 62.395 63.395 0 0 0 0 0.99248 1 35083 35083 1.4819 0.68827 1 + 4909 23102 3269 3345 5735 5735 -0.1360760719924201 CTDTGVLF 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))TDTGVLF_ C(1)TDTGVLF C(86)TDTGVLF 0 1 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.4130249023438 1 912.413145 911.405868 0.18897 0.00017242 0.32601 0.00029745 0.51498 0.00046987 912.4133640253436 67.74 0.35305 61.564 61.368 61.721 -6.1757 30 19 2 0 0 0 0.15234 4 44226 44039;44080;44216;44226 86.121 19.086 1 15581000 4910 3774 3270 3346 5736;5737;5738;5739 5739 383 -0.05337829516599868 CTFCTDHYL 9 Unmodified _CTFCTDHYL_ 0 0 0 REV__ENSG00000144791|ENST00000273317|LIMD1 REV__ENSG00000144791|ENST00000273317|LIMD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7197265625 2 551.720252 1101.42595 NaN NaN NaN NaN NaN NaN NaN 40.256 1 40.256 39.756 40.756 0 0 0 0 0.6306 1 21625 21625 11.64 0 1 + 4911 20735 3271 3347 5740 5740 -0.12070401848291112 CTGYVRDLRWG 11 Unmodified _CTGYVRDLRWG_ 0 0 0 REV__ENSG00000164764|ENST00000297354|SBSPON REV__ENSG00000164764|ENST00000297354|SBSPON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.3258666992188 2 663.324596 1324.63464 0.8113 0.00053815 -0.48863 -0.00032412 0.32267 0.00021403 663.3241824515399 81.121 0.32722 80.628 80.487 80.815 -0.49247 38 21 2 0 0 0 0.70147 1 44409 44409 2.4985 0.21571 1 2966600 + 4912 21949 3272 3348 5741 5741 -0.01469237219862407 CTGYVRDLRWG 11 Unmodified _CTGYVRDLRWG_ 0 0 0 REV__ENSG00000164764|ENST00000297354|SBSPON REV__ENSG00000164764|ENST00000297354|SBSPON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.3250732421875 2 663.324596 1324.63464 0.39937 0.00026491 -0.98855 -0.00065573 -0.58918 -0.00039082 663.3235530925905 80.18 0.78436 80.238 80.004 80.788 0.057587 68 36 2 0 0 0 0.68282 3 44257 44257;44361;44589 7.1017 1.3699 1 38504000 + 4913 21949 3272 3348 5742;5743;5744 5742 -0.01469237219862407 CTHHCEGC 8 Unmodified _CTHHCEGC_ 0 0 0 REV__nc|ENSG00000140479|P29122-2|PCSK6 REV__nc|ENSG00000140479|P29122-2|PCSK6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 445.313720703125 2 445.141115 888.267677 1.6165 0.00071955 0.14922 6.6424E-05 1.7657 0.00078598 445.1409175105602 47.765 0.36316 42.531 42.348 42.711 -5.2339 29 21 2 0 0 0 8.7369 1 29711 29711 2.3027 1.5091 1 9899400 + 4914 20475 3273 3349 5745 5745 -0.18092599308363333 CTKPAPGSI 9 Unmodified _CTKPAPGSI_ 0 0 0 ENST00000481305.1_1_7:150500415-150501953:+|nuORF;ENST00000475007.5_1_7:150500316-150501569:+|nuORF ENST00000481305.1_1_7:150500415-150501953:+|nuORF ENST00000481305.1_1_7:150500415-150501953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2303466796875 2 437.228571 872.442588 2.8249 0.0012351 -0.10133 -4.4303E-05 2.7236 0.0011908 437.2284147478314 96.979 0.35368 96.972 96.747 97.101 -0.007019 21 13 2 0 0 0 0.55144 1 53789 53789 4.3292 0 1 4403100 4915 13947 3274 3350 5746 5746 0.0012646709998307415 CTLGHMWAF 9 Unmodified _CTLGHMWAF_ 0 0 0 ENST00000258418.9_1_2:231683570-231683627:+|nuORF ENST00000258418.9_1_2:231683570-231683627:+|nuORF ENST00000258418.9_1_2:231683570-231683627:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.8269653320312 3 355.826341 1064.45719 0.54136 0.00019263 0.82197 0.00029248 1.3633 0.00048511 355.82662142755703 47.938 0.25517 47.586 47.496 47.751 -0.3526 23 12 2 0 0 0 0.57331 1 25736 25736 2.9952 0.26005 1 4497700 4916 11203 3275 3351 5747 5747 -0.07245784023530177 CTLGHMWAF 9 Unmodified _CTLGHMWAF_ 0 0 0 ENST00000258418.9_1_2:231683570-231683627:+|nuORF ENST00000258418.9_1_2:231683570-231683627:+|nuORF ENST00000258418.9_1_2:231683570-231683627:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 355.826341 1064.45719 1.8744 0.00066697 1.1418 0.00040627 3.0162 0.0010732 355.8269104067038 53.636 0.49891 47.832 47.628 48.127 -5.8042 0.15244 0.00029373 NaN 2.9952 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 29565000 4917 11203 3275 3351 -0.07245784023530177 CTLPENVCNI 10 Unmodified _CTLPENVCNI_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2550659179688 2 553.254459 1104.49437 1.9259 0.0010655 -1.2488 -0.0006909 0.67709 0.0003746 553.2537650538256 93.392 0.30406 93.415 93.242 93.546 0.022987 27 11 3 0 0 0 0.50362 1 51943 51943 16.149 1.3108 1 2752100 4918 7947 3276 3352 5748 5748 -0.053701572684303756 CTLPVLAATF 10 Unmodified _CTLPVLAATF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2791748046875 2 518.280803 1034.54705 NaN NaN NaN NaN NaN NaN NaN 89.396 1 88.894 88.394 89.394 -0.50171 0 0 0 0.97302 1 48878 48878 3.5965 0.70727 1 + 4919 21892 3277 3353 5749 5749 0.031161688566498924 CTLRFLPF 8 Unmodified _CTLRFLPF_ 0 0 0 nc|ENSG00000100150|O75140-6|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.765869140625 2 498.770406 995.526258 0.40525 0.00020213 -2.2555 -0.001125 -1.8503 -0.00092287 498.7695125112997 63.885 0.52544 63.4 63.213 63.739 -0.48512 49 27 2 0 0 0 0.63229 1 34804 34804 23.148 0.69579 1 4951400 4920 16082 3278 3354 5750 5750 0.028316232676843356 CTNYLKMYYFT 11 Unmodified _CTNYLKMYYFT_ 0 0 0 REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.8854064941406 3 482.885925 1445.63594 0.45312 0.0002188 -2.1943 -0.0010596 -1.7411 -0.00084077 482.8848727109251 45.918 0.12886 45.89 45.844 45.973 -0.028011 9 5 2 0 0 0 0.70147 1 24700 24700 4.1166 1.8639 1 2480500 + 4921 26024 3279 3355 5751 5751 -0.06904783965956085 CTQCGPIGVVK 11 Unmodified _CTQCGPIGVVK_ 0 0 0 REV__ENST00000530105.1_1_11:57156392-57157417:-|nuORF REV__ENST00000530105.1_1_11:57156392-57157417:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.8569641113281 3 368.856188 1103.54674 NaN NaN NaN NaN NaN NaN NaN 4.4548 1 1.9728 1.4728 2.4728 -2.482 0 0 0 0.94184 1 2260 2260 0.40827 0 1 + 4922 23587 3280 3356 5752 5752 -0.000895741348131196 CTQPHRPSGGL 11 Unmodified _CTQPHRPSGGL_ 0 0 0 REV__ENST00000261499.8_2_17:19265865-19266015:-|nuORF REV__ENST00000261499.8_2_17:19265865-19266015:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7830810546875 2 576.782564 1151.55058 0.58661 0.00033835 1.9885 0.0011469 2.5751 0.0014853 576.7833183536019 86.022 0.32694 85.519 85.32 85.647 -0.50318 33 12 4 0 0 0 0.68427 1 47032 47032 5.7319 0.50118 1 998870 + 4923 24993 3281 3357 5753 5753 -0.019137683167173236 CTRHQVLF 8 Unmodified _CTRHQVLF_ 0 0 0 nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT nc|ENSG00000065154|P04181-2|OAT nc|ENSG00000065154|P04181-2|OAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2596740722656 2 502.260736 1002.50692 0.43102 0.00021648 -4.3214 -0.0021705 -3.8904 -0.001954 502.2588742171495 83.631 0.15163 83.631 83.516 83.668 0 8 6 2 0 0 0 0.80676 1 46380 46380 2.5775 0.27475 1 305540 4924 893 3282 3358 5754 5754 0.0057666697678087075 CTSPPGLSY 9 Unmodified _CTSPPGLSY_ 0 0 0 ENSG00000146950|ENST00000380913|SHROOM2 ENSG00000146950|ENST00000380913|SHROOM2 ENSG00000146950|ENST00000380913|SHROOM2 MSMS AL20221201_MKP_PDAC_01 4 462.7088623046875 2 462.710211 923.405868 NaN NaN NaN NaN NaN NaN NaN 17.155 1 14.568 14.068 15.068 -2.5866 0 0 0 0.7453 1 8945 8945 7.9102 1.5561 1 4925 5810 3283 3359 5755 5755 -0.058898295165818126 CTSQKLQMQI 10 Unmodified _CTSQKLQMQI_ 0 0 0 REV__ENST00000557978.6_1_19:19680348-19681054:-|nuORF REV__ENST00000557978.6_1_19:19680348-19681054:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.8048706054688 2 590.296659 1178.57876 0.47391 0.00027975 0.77713 0.00045874 1.251 0.00073849 590.2956086882981 49.554 0.39977 49.554 49.393 49.793 0 52 17 4 0 0 0 0.27276 1 27240 27240 29.082 1.4528 1 15732000 + 4926 18452 3284 3360 5756 5756 -0.0033820645166997565 CTYNGQRF 8 Unmodified _CTYNGQRF_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7181701660156 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 5.3556 1 5.3567 4.8567 5.8567 0.0010915 0 0 0 0.97444 1 2698 2698 0.69038 0 1 4927 10523 3285 3361 5757 5757 -0.07096489190928423 CVAPTIHVY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))VAPTIHVY_ C(1)VAPTIHVY C(99)VAPTIHVY 0 1 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813983-85814121:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2689819335938 2 530.268227 1058.5219 0.36771 0.00019499 0.37054 0.00019649 0.73825 0.00039147 530.2686241951534 46.248 0.36909 45.911 45.762 46.131 -0.33664 47 18 3 0 0 0 0.0084408 1 24711 24711 98.807 68.171 1 37650000 4928 4303 3286 3362 5758 5758 434 -0.005018859459141822 CVAPTIHVY 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))VAPTIHVY_ C(1)VAPTIHVY C(74)VAPTIHVY 0 1 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813983-85814121:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2711181640625 2 530.268227 1058.5219 0.48144 0.00025529 1.236 0.00065539 1.7174 0.00091068 530.2687792772163 51.759 0.39374 46.025 45.826 46.22 -5.7345 37 20 2 0 0 0 0.012158 1 32542 32542 74.396 51.248 1 170200000 4929 4303 3286 3362 5759 5759 434 -0.005018859459141822 CVCCEFEYF 9 Unmodified _CVCCEFEYF_ 0 0 0 REV__nc|ENSG00000112511|O43189-2|PHF1 REV__nc|ENSG00000112511|O43189-2|PHF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7025146484375 2 571.703214 1141.39187 1.0024 0.00057308 -1.0513 -0.00060102 -0.048879 -2.7944E-05 571.7027304389597 54.277 0.32967 54.277 54.132 54.462 0 21 14 2 0 0 0 0.58466 1 30163 30163 2.3027 0 1 1054500 + 4930 18822 3287 3363 5760 5760 -0.17316566331555805 CVCGLCWPA 9 Unmodified _CVCGLCWPA_ 0 0 0 ENST00000420698.5_1_12:125002746-125002839:-|nuORF ENST00000420698.5_1_12:125002746-125002839:-|nuORF ENST00000420698.5_1_12:125002746-125002839:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.1981811523438 2 476.197902 950.38125 NaN NaN NaN NaN NaN NaN NaN 14.126 1 14.095 13.595 14.595 -0.030868 0 0 0 0.85737 1 6852 6852 0.6015 0 1 4931 13102 3288 3364 5761 5761 -0.0959250419533646 CVELINQKVPQ 11 Unmodified _CVELINQKVPQ_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;ENST00000533509.1_1_11:128855854-128936700:-|nuORF;nc|ENSG00000134909|A7KAX9-3|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32;nc|ENSG00000134909|A7KAX9-3|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.8436889648438 2 635.84483 1269.67511 0.085531 5.4385E-05 -1.7186 -0.0010928 -1.6331 -0.0010384 635.84397715396 94.701 0.2645 94.281 94.129 94.393 -0.42043 22 13 2 0 0 0 0.69316 1 51713 51713 4.897 2.1618 1 406510 4932 4653;16204 3289 3365 5762 5762 0.051056843799187845 CVFVFALFFF 10 Unmodified _CVFVFALFFF_ 0 0 0 REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2143859863281 3 413.880551 1238.61982 NaN NaN NaN NaN NaN NaN NaN 17.906 1 17.906 17.406 18.406 0 0 0 0 0.98914 1 8864 8864 0.77653 0.078866 1 + 4933 26429 3290 3366 5763 5763 0.010059226500970908 CVHQGCFAAF 10 Unmodified _CVHQGCFAAF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7312622070312 2 541.730954 1081.44736 NaN NaN NaN NaN NaN NaN NaN 91.632 1 91.151 90.651 91.651 -0.48092 0 0 0 0.99091 1 50085 50085 1.6526 0.85899 1 4934 9717 3291 3367 5764 5764 -0.09010972028931974 CVKWEILLQY 10 Unmodified _CVKWEILLQY_ 0 0 0 REV__ENSG00000198382|ENST00000356136|UVRAG REV__ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8480834960938 2 647.846842 1293.67913 0.94019 0.0006091 -0.64961 -0.00042085 0.29058 0.00018825 647.8467691761564 60.403 0.60004 54.288 54.1 54.7 -6.1147 64 31 3 0 0 0 0.44171 1 38953 38953 19.362 0.10495 1 57665000 + 4935 24015 3292 3368 5765 5765 0.04403773873650607 CVLFFLCAI 9 Unmodified _CVLFFLCAI_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7703247070312 2 514.769017 1027.52348 2.1986 0.0011317 -0.37324 -0.00019213 1.8253 0.00093961 514.7687628804528 94.616 0.41016 94.63 94.382 94.792 0.014244 33 15 3 0 0 0 0.53666 1 52533 52533 5.2307 2.6532 1 2179400 + 4936 22370 3293 3369 5766 5766 0.010820318185096767 CVLSHYPFF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))VLSHYPFF_ C(1)VLSHYPFF C(89)VLSHYPFF 0 1 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2752075195312 2 585.276052 1168.53755 1.0253 0.00060011 -0.62095 -0.00036343 0.40439 0.00023668 585.2753518777622 90.857 0.67255 84.682 84.34 85.012 -6.1757 55 39 2 0 0 0 0.0086179 4 59973 59840;59973;60114;60252 89.427 60.94 1 12568000 4937 2724 3294 3370 5767;5768;5769;5770 5768 280 -0.03997599428862486 CVLSPKGHAKD 11 Unmodified _CVLSPKGHAKD_ 0 0 0 ENST00000570164.5_1_16:31500819-31501287:-|nuORF ENST00000570164.5_1_16:31500819-31501287:-|nuORF ENST00000570164.5_1_16:31500819-31501287:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.804443359375 2 577.802965 1153.59138 1.2012 0.00069406 0.52278 0.00030207 1.724 0.00099613 577.803182736606 94.566 0.54707 88.391 88.045 88.592 -6.1757 46 31 2 0 0 0 0.42108 1 62509 62509 20.415 2.2682 1 8237900 4938 15471 3295 3371 5771 5771 0.020725730028743783 CVLYFVPDL 9 Unmodified _CVLYFVPDL_ 0 0 0 REV__ENSG00000145246|ENST00000273859|ATP10D REV__ENSG00000145246|ENST00000273859|ATP10D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7741088867188 2 534.775354 1067.53615 NaN NaN NaN NaN NaN NaN NaN 87.87 1 87.365 86.865 87.865 -0.50423 0 0 0 0.82015 1 48062 48062 5.2307 2.3415 1 + 4939 20763 3296 3372 5772 5772 0.00508766482403189 CVMHHVVF 8 Unmodified _CVMHHVVF_ 0 0 0 REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2348937988281 2 486.233133 970.451713 NaN NaN NaN NaN NaN NaN NaN 53.11 1 53.046 52.546 53.546 -0.063423 0 0 0 0.94749 1 28791 28791 11.114 3.2043 1 + 4940 25128 3297 3373 5773 5773 -0.03469462815337465 CVPRSNSG 8 Unmodified _CVPRSNSG_ 0 0 0 ENST00000561457.2_1_9:139007800-139008082:-|nuORF ENST00000561457.2_1_9:139007800-139008082:-|nuORF ENST00000561457.2_1_9:139007800-139008082:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 820.3798217773438 1 819.377762 818.370486 0.76498 0.00062681 0.33251 0.00027245 1.0975 0.00089926 819.3777607746822 44.291 0.38317 39.439 39.249 39.632 -4.852 50 27 2 0 0 0 0.79669 1 26932 26932 8.5933 0.68312 1 22479000 4941 15323 3298 3374 5774 5774 -0.045964472537320944 CVPRTFFCHER 11 Unmodified _CVPRTFFCHER_ 0 0 0 ENST00000424894.1_1_6:106535744-106536103:+|nuORF ENST00000424894.1_1_6:106535744-106536103:+|nuORF ENST00000424894.1_1_6:106535744-106536103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 697.8250122070312 2 697.826449 1393.63834 -0.3854 -0.00026894 -1.0247 -0.00071508 -1.4101 -0.00098402 697.8256682301422 44.521 0.33379 44.521 44.397 44.73 0 37 17 3 0 0 0 0.68427 1 24304 24304 5.7319 0.83484 1 13465000 4942 13156 3299 3375 5775 5775 -0.042728907176524444 CVRIRISKRF 10 Unmodified _CVRIRISKRF_ 0 0 0 ENST00000556469.5_1_14:50649281-50666455:-|nuORF ENST00000556469.5_1_14:50649281-50666455:-|nuORF ENST00000556469.5_1_14:50649281-50666455:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5919799804688 3 426.592286 1276.75503 1.2334 0.00052615 -4.0749 -0.0017383 -2.8415 -0.0012121 426.59098248220454 79.07 0.15765 72.895 72.829 72.986 -6.1757 10 8 2 0 0 0 0.67413 1 51828 51828 5.7834 0.38072 1 4322600 4943 15239 3300 3376 5776 5776 0.12772215564427825 CVSAVVMIGL 10 Unmodified _CVSAVVMIGL_ 0 0 0 REV__ENSG00000006638|ENST00000375190|TBXA2R REV__ENSG00000006638|ENST00000375190|TBXA2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2684326171875 2 496.269381 990.524209 1.5459 0.0007672 -1.0739 -0.00053295 0.47203 0.00023425 496.2686235772555 62.442 0.47125 56.266 56.073 56.544 -6.1757 42 24 2 0 0 0 0.33553 1 40192 40192 25.399 4.9457 1 18651000 + 4944 16994 3301 3377 5777 5777 0.028568264675527644 CVTARCYHIF 10 Unmodified _CVTARCYHIF_ 0 0 0 REV__nc|ENSG00000163832|Q0PNE2-2|ELP6 REV__nc|ENSG00000163832|Q0PNE2-2|ELP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.55615234375 3 404.859933 1211.55797 NaN NaN NaN NaN NaN NaN NaN 20.01 1 20.01 19.51 20.51 0 0 0 0 0.96981 1 10047 10047 1.9064 0 1 + 4945 21824 3302 3378 5778 5778 -0.03934752040686362 CVTQNAGCPQA 11 Unmodified _CVTQNAGCPQA_ 0 0 0 REV__ENSG00000064300|ENST00000172229|NGFR REV__ENSG00000064300|ENST00000172229|NGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.235595703125 2 546.234058 1090.45356 0.32229 0.00017605 2.1786 0.00119 2.5009 0.0013661 546.2353216850131 86.293 0.23669 85.789 85.621 85.858 -0.50318 16 9 2 0 0 0 0.73389 1 47225 47225 1.0715 0.27783 1 407580 + 4946 17352 3303 3379 5779 5779 -0.08804498588074239 CVVIDEAHRL 10 Unmodified _CVVIDEAHRL_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5382690429688 3 385.537736 1153.59138 1.6018 0.00061755 0.75124 0.00028963 2.353 0.00090718 385.8726344088314 94.42 0.5666 88.244 87.96 88.527 -6.1757 51 32 2 0 0 0 0.69377 1 62478 62478 1.7423 0 1 5337300 4947 8091 3304 3380 5780 5780 0.020725730028743783 CVVSTDDIGGF 11 Unmodified _CVVSTDDIGGF_ 0 0 0 REV__ENST00000422625.5_1_3:190231889-190282131:+|nuORF REV__ENST00000422625.5_1_3:190231889-190282131:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3054809570312 2 556.750064 1111.48558 0.53818 0.00029963 1.0814 0.00060205 1.6195 0.00090168 556.7505998688893 78.98 0.13688 78.495 78.416 78.553 -0.48596 8 5 2 0 0 0 0.29414 1 43248 43248 10.074 0 1 295080 + 4948 26858 3305 3381 5781 5781 -0.06570807633261211 CVWAPQVPTL 10 Unmodified _CVWAPQVPTL_ 0 0 0 ENST00000595881.1_1_19:50017122-50017545:+|nuORF;ENST00000598936.1_1_19:50016657-50017545:+|nuORF ENST00000595881.1_1_19:50017122-50017545:+|nuORF ENST00000595881.1_1_19:50017122-50017545:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.2923583984375 2 557.291702 1112.56885 0.77775 0.00043344 -0.96473 -0.00053764 -0.18698 -0.0001042 557.2913734834594 63.366 0.27832 63.344 63.182 63.46 -0.021618 26 13 3 0 0 0 0.40136 1 34702 34702 21.537 1.0834 1 5354200 4949 15762 3306 3382 5782 5782 0.01706973605246276 CVYVMDCYF 9 Unmodified _CVYVMDCYF_ 0 0 0 REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF REV__ENST00000472733.1_1_6:169646190-169648751:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.4832763671875 3 381.483363 1141.42826 0.4962 0.00018929 -0.042741 -1.6305E-05 0.45346 0.00017299 381.48337574308187 63.885 0.44095 63.4 63.234 63.675 -0.48512 57 23 3 0 0 0 0.61256 1 34803 34803 0.26902 0 1 10460000 + 4950 27525 3307 3383 5783 5783 -0.13679689434866305 CWCVCRGF 8 Unmodified _CWCVCRGF_ 0 0 0 REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.1959838867188 2 487.195693 972.376834 -0.16978 -8.2716E-05 0.3725 0.00018148 0.20272 9.8765E-05 487.1960967638722 71.253 0.46685 71.253 70.975 71.442 0 36 22 2 0 0 0 0.80624 1 39618 39618 2.8892 0 1 1525100 + 4951 30092 3308 3384 5784 5784 -0.11045968618225288 CWCVCRGF 8 Unmodified _CWCVCRGF_ 0 0 0 REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 487.195693 972.376834 -0.16978 -8.2716E-05 0.3725 0.00018148 0.20272 9.8765E-05 487.1960967638722 71.253 0.46685 71.253 70.975 71.442 0 -0.0020319 6.9877E-05 NaN 2.8892 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1525100 + 4952 30092 3308 3384 -0.11045968618225288 CWCVCRGF 8 Unmodified _CWCVCRGF_ 0 0 0 REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant REV__RNF43|p.L61Qfs*13|1|0.92|ENSG00000108375|chr17:58415395-58415396|CA/-|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 487.195693 972.376834 0.66292 0.00032297 0.10921 5.3205E-05 0.77213 0.00037618 487.1957325133283 71.733 0.24654 71.257 71.047 71.293 -0.47609 0.0020319 -0.00018667 NaN 2.8892 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 316500 + 4953 30092 3308 3384 -0.11045968618225288 CWEQKKRGL 9 Unmodified _CWEQKKRGL_ 0 0 0 REV__ENST00000393360.7_1_5:179663386-179666931:-|nuORF REV__ENST00000393360.7_1_5:179663386-179666931:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.2081604003906 3 383.206209 1146.5968 NaN NaN NaN NaN NaN NaN NaN 84.216 1 83.716 83.216 84.216 -0.49961 0 0 0 0.86004 1 46088 46088 0.26902 0 1 + 4954 26418 3309 3385 5785 5785 0.029362965853351852 CWFCRYCF 8 Unmodified _CWFCRYCF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|125|1|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|125|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2164306640625 2 564.216626 1126.4187 -0.35356 -0.00019949 1.1631 0.00065624 0.80954 0.00045676 564.2171887904675 78.241 0.39825 77.755 77.559 77.957 -0.48595 50 18 5 0 0 0 0.80624 1 42896 42896 2.8892 0.82947 1 2714300 + 4955 29439 3310 3386 5786 5786 -0.13945412929706436 CWGKRPGK 8 Unmodified _CWGKRPGK_ 0 0 0 ENST00000496632.1_1_1:161094264-161100812:-|nuORF ENST00000496632.1_1_1:161094264-161100812:-|nuORF ENST00000496632.1_1_1:161094264-161100812:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2513427734375 2 466.250172 930.48579 0.5327 0.00024837 -0.14272 -6.6544E-05 0.38998 0.00018183 466.25012001981344 97.282 0.68275 97.282 96.972 97.654 0 58 32 2 0 0 0 0.80975 1 53630 53630 0.79363 0.10326 1 9378000 4956 14377 3311 3387 5787 5787 0.017767016679158587 CWGRRGGS 8 Unmodified _CWGRRGGS_ 0 0 0 ENST00000248633.8_1_7:92151491-92157780:-|nuORF ENST00000248633.8_1_7:92151491-92157780:-|nuORF ENST00000248633.8_1_7:92151491-92157780:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 878.4070434570312 1 878.40498 877.397704 0.11861 0.00010419 0.26828 0.00023565 0.38689 0.00033984 878.4069113368265 97.29 0.78693 97.29 96.896 97.683 0 103 37 3 0 0 0 0.80975 2 53592 53592;53908 0.79363 0 1 2044500 4957 11130 3312 3388 5788;5789 5788 -0.045899189226815906 CWPLLPGSTF 10 Unmodified _CWPLLPGSTF_ 0 0 0 ENSG00000173261|ENST00000311450|PLAC8L1 ENSG00000173261|ENST00000311450|PLAC8L1 ENSG00000173261|ENST00000311450|PLAC8L1 MSMS AL20221201_MKP_PDAC_01 4 560.7792358398438 2 560.778428 1119.5423 NaN NaN NaN NaN NaN NaN NaN 83.806 1 77.631 77.131 78.131 -6.1757 0 0 0 0.64375 1 55119 55119 19.257 1.1106 1 4958 8307 3313 3389 5790 5790 -0.012687152860735296 CWRLWHWYQRR 11 Unmodified _CWRLWHWYQRR_ 0 0 0 REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF REV__ENST00000513055.1_1_5:92921088-92921313:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.4168701171875 2 845.420228 1688.8259 NaN NaN NaN NaN NaN NaN NaN 86.302 1 86.363 85.863 86.863 0.061638 0 0 0 0.94307 1 47900 47900 0.30703 0.30703 1 + 4959 28174 3314 3390 5791 5791 0.009043086019119073 CWRQFSFQ 8 Unmodified _CWRQFSFQ_ 0 0 0 REV__ENST00000261597.8_1_18:2571510-2573058:+|nuORF REV__ENST00000261597.8_1_18:2571510-2573058:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2513427734375 2 551.250369 1100.48618 NaN NaN NaN NaN NaN NaN NaN 30.696 1 30.696 30.196 31.196 0 0 0 0 0.97444 1 15956 15956 2.0598 0 1 + 4960 24998 3315 3391 5792 5792 -0.060039234028863575 CWSHAATAAA 10 Unmodified _CWSHAATAAA_ 0 0 0 REV__ENST00000337198.9_1_8:103876093-103876378:-|nuORF REV__ENST00000337198.9_1_8:103876093-103876378:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7188110351562 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 12.599 1 12.599 12.099 13.099 0 0 0 0 1.0061 1 5963 5963 0 0 1 + 4961 25656 3316 3392 5793 5793 -0.0709648919096253 CWVSFCEYL 9 Unmodified _CWVSFCEYL_ 0 0 0 ENST00000451442.5_3_20:24943788-24944004:-|nuORF ENST00000451442.5_3_20:24943788-24944004:-|nuORF ENST00000451442.5_3_20:24943788-24944004:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.8306274414062 3 383.829639 1148.46709 NaN NaN NaN NaN NaN NaN NaN 93.006 1 86.83 86.33 87.33 -6.1757 0 0 0 0.82396 1 61530 61530 2.7352 0.23671 1 4962 13522 3317 3393 5794 5794 -0.10120640808804637 CYCCCCCI 8 Unmodified _CYCCCCCI_ 0 0 0 REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF REV__ENST00000242728.4_1_12:26273527-26273698:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.2579650878906 2 457.113809 912.213064 NaN NaN NaN NaN NaN NaN NaN 19.206 1 16.549 16.049 17.049 -2.6564 0 0 0 0.97444 1 10155 10155 0.79363 0 1 + 4963 24846 3318 3394 5795 5795 -0.246553937673184 CYCHCCCPRC 10 Unmodified _CYCHCCCPRC_ 0 0 0 ENST00000357375.4_1_19:51920198-51920960:-|nuORF;ENST00000353836.9_1_19:51920668-51920960:-|nuORF ENST00000357375.4_1_19:51920198-51920960:-|nuORF ENST00000357375.4_1_19:51920198-51920960:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.1808471679688 2 595.67817 1189.34179 0.55119 0.00032833 0.97764 0.00058236 1.5288 0.00091069 595.6782454851104 87.751 0.2564 87.247 87.154 87.411 -0.50423 14 11 2 0 0 0 0.72607 1 47995 47995 0 0 1 486870 4964 12058 3319 3395 5796 5796 -0.2453103880436629 CYCKVNFI 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YC(Carbamidomethyl (C))KVNFI_ C(1)YC(1)KVNFI C(78)YC(78)KVNFI 0 2 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2545776367188 2 552.254262 1102.49397 1.2165 0.00067184 -1.0065 -0.00055585 0.21003 0.00011599 552.2537068968903 53.723 0.37996 47.918 47.729 48.109 -5.8042 58 24 3 0 0 0 0.17881 1 33949 33949 78.445 59.006 1 45757000 4965 1043 3320 3396 5797 5797 90;91 -0.05317532197614128 CYDDLSRLLW 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))YDDLSRLLW_ C(1)YDDLSRLLW C(110)YDDLSRLLW 0 1 0 ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6 ENSG00000165271|ENST00000297990|NOL6 ENSG00000165271|ENST00000297990|NOL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.8180541992188 2 670.818812 1339.62307 1.2743 0.0008548 0.27642 0.00018543 1.5507 0.0010402 670.8191261181241 98.224 0.14971 92.048 91.952 92.102 -6.1757 16 9 2 0 0 0 0.00089362 1 65116 65116 114.19 82.918 1 19479000 4966 7316 3321 3397 5798 5798 716 -0.033154790338358 CYDHPCFL 8 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YDHPC(Carbamidomethyl (C))FL_ C(1)YDHPC(1)FL C(82)YDHPC(82)FL 0 2 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.220703125 2 556.22042 1110.42629 1.1579 0.00064404 -0.35125 -0.00019537 0.80663 0.00044867 556.2203170228838 55.01 0.55873 49.089 48.808 49.366 -5.9211 114 34 5 0 0 0 0.17035 2 34846 34846;34991 81.864 58.716 1 337200000 4967 2781 3322 3398 5799;5800 5799 286;287 -0.12450982128416399 CYDNLDTSSF 10 Unmodified _CYDNLDTSSF_ 0 0 0 REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF REV__ENST00000603302.5_1_4:108956031-108956223:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7308349609375 2 582.729329 1163.4441 0.18086 0.00010539 1.2938 0.00075393 1.4747 0.00085932 582.7304266851281 56.739 0.29062 56.739 56.586 56.877 0 19 12 2 0 0 0 0.56348 1 31553 31553 13.042 1.4022 1 3037200 + 4968 29275 3323 3399 5801 5801 -0.13107988392607695 CYDQGISGHHL 11 Unmodified _CYDQGISGHHL_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG;ENST00000412458.6_1_19:38845366-38860119:+|nuORF ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5173950195312 3 410.517112 1228.52951 0.27657 0.00011354 1.2514 0.00051372 1.528 0.00062726 410.51746507082777 36.944 0.44852 36.944 36.69 37.138 0 61 21 4 0 0 0 0.70701 1 19540 19540 1.4551 0 1 3315200 4969 1695 3324 3400 5802 5802 -0.07561778416265952 CYDRVTQHL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YDRVTQHL_ C(1)YDRVTQHL C(63)YDRVTQHL 0 1 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.1919555664062 3 397.857357 1190.55024 0.85468 0.00034004 -0.053338 -2.1221E-05 0.80134 0.00031882 397.8573607469663 28.988 0.33506 25.687 25.48 25.815 -3.3016 29 18 2 0 0 0 0.020676 2 16305 16156;16305 62.869 47.33 1 95378000 4970 8296;16388 3325 3401 5803;5804 5804 795 -0.03741188036610765 CYDRVTQHL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YDRVTQHL_ C(1)YDRVTQHL C(120)YDRVTQHL 0 1 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20221201_MKP_PDAC_01 4 596.2807006835938 2 596.282397 1190.55024 NaN NaN NaN NaN NaN NaN NaN 29.057 1 25.755 25.255 26.255 -3.3016 0 0 0 0.020126 1 16270 16270 117.84 75.998 1 4971 8296;16388 3325 3401 5805 5805 795 -0.03741188036610765 CYDSMIRI 8 Unmodified _CYDSMIRI_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7324523925781 2 500.733163 999.451773 0.34101 0.00017075 -1.1095 -0.00055558 -0.76852 -0.00038482 500.7323933997575 68.15 0.28502 67.668 67.518 67.803 -0.48219 31 13 3 0 0 0 0.75262 1 37237 37237 12.532 0.89125 1 2764700 4972 4720 3326 3402 5806 5806 -0.047975076060083666 CYEFLSQHT 9 Unmodified _CYEFLSQHT_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2444458007812 2 564.244949 1126.47534 0.41437 0.00023381 -0.32057 -0.00018088 0.093804 5.2929E-05 564.2447436499039 54.125 0.23648 53.658 53.547 53.784 -0.46664 24 11 3 0 0 0 0.45045 1 29372 29372 10.074 3.3508 1 1532400 4973 3033 3327 3403 5807 5807 -0.0828337056784676 CYEMQIYLYH 10 Unmodified _CYEMQIYLYH_ 0 0 0 REV__ENSG00000128829|ENST00000263791|EIF2AK4 REV__ENSG00000128829|ENST00000263791|EIF2AK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8676452636719 3 454.866753 1361.57843 NaN NaN NaN NaN NaN NaN NaN 80.342 1 80.342 79.842 80.842 0 0 0 0 1.0019 1 44611 44611 0.15932 0.064481 1 + 4974 19636 3328 3404 5808 5808 -0.0878962617155139 CYGDITIHF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YGDITIHF_ C(1)YGDITIHF C(97)YGDITIHF 0 1 0 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2559814453125 2 563.255317 1124.49608 1.3277 0.00074783 0.2263 0.00012746 1.554 0.00087529 563.757296758714 71.57 0.55302 65.394 65.066 65.619 -6.1757 42 28 2 0 0 0 0.0083087 2 46689 46689;46830 97.075 61.03 1 26532000 4975 7368 3329 3405 5809;5810 5809 721 -0.061187801881942505 CYGSFYNLL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YGSFYNLL_ C(1)YGSFYNLL C(54)YGSFYNLL 0 1 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.260498046875 2 568.757692 1135.50083 1.3043 0.00074183 -0.65572 -0.00037294 0.64859 0.00036889 568.7573917390059 95.414 0.63274 89.239 88.767 89.399 -6.1757 61 35 2 0 0 0 0.03327 2 62962 62962;63109 53.576 41.044 1 13892000 4976 3750 3330 3406 5811;5812 5811 374 -0.06149896045417336 CYGTVSSL 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))YGTVSSL_ C(1)YGTVSSL C(91)YGTVSSL 0 1 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1 ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.3988037109375 1 886.397495 885.390218 0.94886 0.00084107 0.007714 6.8377E-06 0.95658 0.00084791 886.3977350419638 47.73 0.46307 42.496 42.229 42.692 -5.2339 66 27 3 0 0 0 0.13235 2 29679 29542;29679 90.836 16.439 1 35732000 4977 2113 3331 3407 5813;5814 5814 212 -0.057061160336502326 CYGTVSSL 8 Carbamidomethyl (C) _C(Carbamidomethyl (C))YGTVSSL_ C(1)YGTVSSL C(53)YGTVSSL 0 1 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1 ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7025756835938 2 443.702386 885.390218 1.7205 0.00076338 -0.76572 -0.00033975 0.95475 0.00042363 443.70205383191865 47.74 0.41316 42.506 42.279 42.692 -5.2339 37 24 2 0 0 0 0.32412 1 29601 29601 52.693 12.244 1 16186000 4978 2113 3331 3407 5815 5815 212 -0.057061160336502326 CYHCAQKG 8 Unmodified _CYHCAQKG_ 0 0 0 ENSG00000147905|ENST00000336755|ZCCHC7;ENST00000481507.5_1_9:37326993-37357262:+|nuORF ENSG00000147905|ENST00000336755|ZCCHC7 ENSG00000147905|ENST00000336755|ZCCHC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.1895141601562 2 455.188923 908.363292 NaN NaN NaN NaN NaN NaN NaN 88.069 1 88.069 87.569 88.569 0 0 0 0 0.97444 1 48755 48755 0.79363 0.10326 1 4979 5890 3332 3408 5816 5816 -0.09455503125809628 CYHHCCNV 8 Unmodified _CYHHCCNV_ 0 0 0 REV__ENST00000451368.1_1_7:26412040-26412175:-|nuORF REV__ENST00000451368.1_1_7:26412040-26412175:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.6716613769531 2 489.672582 977.330612 -0.44707 -0.00021892 0.61663 0.00030195 0.16955 8.3025E-05 489.6726614577066 33.851 0.30362 33.851 33.688 33.991 0 46 14 5 0 0 0 0.80975 1 17860 17860 0.79363 0 1 11936000 + 4980 27207 3333 3409 5817 5817 -0.15896033520323272 CYHPAVASSDL 11 Unmodified _CYHPAVASSDL_ 0 0 0 REV__nc|ENSG00000142303|Q9H324-2|ADAMTS10 REV__nc|ENSG00000142303|Q9H324-2|ADAMTS10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7644653320312 2 581.763506 1161.51246 NaN NaN NaN NaN NaN NaN NaN 27.077 1 27.077 26.577 27.577 0 0 0 0 0.86932 1 13941 13941 8.7454 3.8484 1 + 4981 20566 3334 3410 5818 5818 -0.06183699022062683 CYHTSPCSF 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YHTSPC(Carbamidomethyl (C))SF_ C(1)YHTSPC(1)SF C(100)YHTSPC(100)SF 0 2 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.72119140625 2 579.720784 1157.42701 0.68726 0.00039842 -1.3903 -0.00080601 -0.70307 -0.00040759 579.7204614051645 32.682 0.3377 28.826 28.652 28.989 -3.8562 38 17 3 0 0 0 0.0088975 1 18634 18634 104.8 84.346 1 21363000 4982 6664 3335 3411 5819 5819 655;656 -0.14540187479383349 CYIAILNII 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YIAILNII_ C(1)YIAILNII C(53)YIAILNII 0 1 0 ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8098754882812 2 546.809728 1091.6049 0.64373 0.000352 0.54237 0.00029657 1.1861 0.00064857 546.8098858090499 101.67 0.081078 95.494 95.443 95.524 -6.1757 9 3 3 0 0 0 0.034897 1 68247 68247 52.693 12.244 1 26412000 4983 625 3336 3412 5820 5820 43 0.06276430782099851 CYIASLVFL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YIASLVFL_ C(1)YIASLVFL C(50)YIASLVFL 0 1 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.28955078125 2 543.288628 1084.5627 0.7698 0.00041822 -0.66882 -0.00036336 0.10097 5.4857E-05 543.2875529001177 101.46 0.25959 95.286 95.091 95.351 -6.1757 40 13 6 0 0 0 0.040472 1 68010 68010 49.669 21.182 1 119400000 4984 765 3337 3413 5821 5821 62 0.023804553737363676 CYICPDIVKEF 11 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YIC(Carbamidomethyl (C))PDIVKEF_ C(1)YIC(1)PDIVKEF C(51)YIC(51)PDIVKEF 0 2 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B ENSG00000106526|ENST00000683684|ACTR3C ENSG00000106526|ENST00000683684|ACTR3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.8392333984375 2 722.335981 1442.65741 0.39153 0.00028282 0.3494 0.00025239 0.74094 0.0005352 722.3361419100169 82.057 0.42807 75.882 75.637 76.066 -6.1757 31 23 2 0 0 0 0.047268 1 53882 53882 51.488 37.582 1 8992200 4985 2435 3338 3414 5822 5822 245;246 -0.0462139893722906 CYKCIHQSL 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YKC(Carbamidomethyl (C))IHQSL_ C(1)YKC(1)IHQSL C(100)YKC(100)IHQSL 0 2 0 nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1 nc|ENSG00000143207|Q8NHY2-2|COP1 nc|ENSG00000143207|Q8NHY2-2|COP1 MSMS AL20221201_MKP_PDAC_01 4 604.7818603515625 2 604.781176 1207.5478 NaN NaN NaN NaN NaN NaN NaN 25.031 1 22.148 21.648 22.648 -2.8831 0 0 0 0.0065554 1 13667 13667 100.09 63.585 1 4986 5478 3339 3415 5823 5823 563;564 -0.04767359765901347 CYKESGRFNAL 11 Unmodified _CYKESGRFNAL_ 0 0 0 REV__nc|ENSG00000096696|P15924-2|DSP REV__nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.8765563964844 3 429.876529 1286.60776 0.31054 0.00013349 0.055377 2.3805E-05 0.36591 0.0001573 429.87659335060164 75.484 0.33804 75.531 75.367 75.705 0.046463 36 15 3 0 0 0 0.72131 1 41639 41639 2.2527 0 1 2002600 + 4987 17963 3340 3416 5824 5824 -0.024083458310087735 CYKESGRFNAL 11 Unmodified _CYKESGRFNAL_ 0 0 0 REV__nc|ENSG00000096696|P15924-2|DSP REV__nc|ENSG00000096696|P15924-2|DSP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 429.876529 1286.60776 0.31054 0.00013349 0.055377 2.3805E-05 0.36591 0.0001573 429.87659335060164 75.484 0.33804 75.531 75.367 75.705 0.046463 0 0 NaN 2.2527 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2002600 + 4988 17963 3340 3416 -0.024083458310087735 CYKLPDNVTF 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))YKLPDNVTF_ C(1)YKLPDNVTF C(100)YKLPDNVTF 0 1 0 ENSG00000140263|ENST00000267814|SORD;ENST00000559230.5_1_15:45353218-45365725:+|nuORF ENSG00000140263|ENST00000267814|SORD ENSG00000140263|ENST00000267814|SORD MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.802490234375 2 628.802631 1255.59071 0.49109 0.0003088 -0.11941 -7.5088E-05 0.37167 0.00023371 628.8027038802841 66.354 1.0053 60.179 59.594 60.599 -6.1757 197 57 5 0 0 0 0.003386 5 43336 42809;42946;43083;43209;43336 103.42 77.019 1 143200000 4989 5213 3341 3417 5825;5826;5827;5828;5829 5829 533 -0.02686266436853657 CYKLPDNVTF 10 Carbamidomethyl (C) _C(Carbamidomethyl (C))YKLPDNVTF_ C(1)YKLPDNVTF C(74)YKLPDNVTF 0 1 0 ENSG00000140263|ENST00000267814|SORD;ENST00000559230.5_1_15:45353218-45365725:+|nuORF ENSG00000140263|ENST00000267814|SORD ENSG00000140263|ENST00000267814|SORD MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.303955078125 2 628.802631 1255.59071 0.52296 0.00032884 -0.567 -0.00035653 -0.044039 -2.7692E-05 628.802319926616 67.085 0.43803 60.91 60.614 61.052 -6.1757 39 24 2 0 0 0 0.021614 1 43670 43670 74.2 46.571 1 18004000 4990 5213 3341 3417 5830 5830 533 -0.02686266436853657 CYKPTRFRL 9 Unmodified _CYKPTRFRL_ 0 0 0 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2185363769531 3 395.218337 1182.63318 -0.60768 -0.00024017 -0.36019 -0.00014236 -0.96787 -0.00038252 395.21819372136565 17.431 0.12956 17.431 17.374 17.503 0 36 19 3 0 0 0 0.58865 1 8585 8585 1.0715 1.0715 1 691700 4991 476 3342 3418 5831 5831 0.049171734820447455 CYKYLMFF 8 Unmodified _CYKYLMFF_ 0 0 0 ENST00000503821.5_1_4:47663725-47840047:-|nuORF;nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN ENST00000503821.5_1_4:47663725-47840047:-|nuORF ENST00000503821.5_1_4:47663725-47840047:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7572021484375 2 557.758649 1113.50275 0.70793 0.00039485 1.455 0.00081153 2.1629 0.0012064 558.2631593951548 84.359 0.20103 83.859 83.775 83.976 -0.49961 17 8 4 0 0 0 0.80624 1 46178 46178 2.8892 0 1 406460 4992 5679 3343 3419 5832 5832 -0.04946558561164238 CYLDKPEEW 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLDKPEEW_ C(1)YLDKPEEW C(170)YLDKPEEW 0 1 0 ENST00000461108.5_1_3:52003444-52003858:-|nuORF;nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B ENST00000461108.5_1_3:52003444-52003858:-|nuORF ENST00000461108.5_1_3:52003444-52003858:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.7719116210938 2 620.271164 1238.52777 0.37061 0.00022988 0.036159 2.2428E-05 0.40677 0.00025231 620.2713226213946 53.275 0.42502 47.471 47.251 47.676 -5.8042 65 26 3 0 0 0 2.8664E-10 2 33562 33562;33691 171.09 131.13 1 82098000 4993 3062 3344 3420 5833;5834 5833 314 -0.08194832224899073 CYLDQFLHF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLDQFLHF_ C(1)YLDQFLHF C(82)YLDQFLHF 0 1 0 nc|ENSG00000089127|P00973-3|OAS1;ENST00000540589.2_1_12:113357336-113369724:+|nuORF nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-3|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.7843017578125 2 621.784241 1241.55393 0.57306 0.00035632 0.38619 0.00024013 0.95925 0.00059645 621.78485755168 99.165 0.13945 92.989 92.908 93.048 -6.1757 18 7 3 0 0 0 0.0095811 1 65958 65958 81.613 37.755 1 82411000 4994 16068 3345 3421 5835 5835 1005 -0.057185182627563336 CYLKDFILL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLKDFILL_ C(1)YLKDFILL C(82)YLKDFILL 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8236694335938 2 592.822835 1183.63112 0.29996 0.00017782 0.14395 8.5335E-05 0.44391 0.00026316 592.8229954946711 99.618 0.1862 93.442 93.354 93.541 -6.1757 45 11 5 0 0 0 0.009483 1 66369 66369 81.89 34.142 1 1043099999.9999999 4995 8367 3346 3422 5836 5836 806 0.04664699953582385 CYLLQVDEF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLLQVDEF_ C(1)YLLQVDEF C(54)YLLQVDEF 0 1 0 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.77685546875 2 593.776082 1185.53761 0.70297 0.00041741 0.33554 0.00019924 1.0385 0.00061664 593.7759812760661 90.418 1.462 84.243 83.808 85.27 -6.1757 140 85 2 0 0 0 0.03327 1 59981 59981 53.576 25.089 1 101430000 4996 7410 3347 3423 5837 5837 723 -0.04773644219517337 CYLQQVKQF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLQQVKQF_ C(1)YLQQVKQF C(210)YLQQVKQF 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.304443359375 2 607.305341 1212.59613 0.25709 0.00015613 -0.15787 -9.5875E-05 0.099221 6.0258E-05 607.3049414002338 51.731 0.28278 45.997 45.812 46.095 -5.7345 27 17 2 0 0 0 3.092E-29 1 32522 32522 214.7 136.56 1 64518000 4997 8367 3348 3424 5838 5838 807 -0.0016654285436743521 CYLRHFNEL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLRHFNEL_ C(1)YLRHFNEL C(52)YLRHFNEL 0 1 0 nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.8695373535156 3 417.869485 1250.58663 1.0334 0.00043182 -1.1747 -0.00049089 -0.14136 -5.9069E-05 417.8687369974691 45.695 0.49483 40.74 40.504 40.999 -4.9549 74 31 3 0 0 0 0.036857 1 28024 28024 51.63 39.402 1 28673000 4998 10199 3349 3425 5839 5839 923 -0.028643111398878318 CYLRHFNEL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLRHFNEL_ C(1)YLRHFNEL C(65)YLRHFNEL 0 1 0 nc|ENSG00000198925|Q7Z3C6-3|ATG9A;nc|ENSG00000198925|Q7Z3C6-2|ATG9A;ENSG00000198925|ENST00000361242|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A nc|ENSG00000198925|Q7Z3C6-3|ATG9A MSMS AL20221201_MKP_PDAC_01 4 626.2989501953125 2 626.30059 1250.58663 NaN NaN NaN NaN NaN NaN NaN 45.736 1 40.781 40.281 41.281 -4.9549 0 0 0 0.032808 1 28130 28130 65.235 36.741 1 4999 10199 3349 3425 5840 5840 923 -0.028643111398878318 CYLSAEELNVF 11 Carbamidomethyl (C) _C(Carbamidomethyl (C))YLSAEELNVF_ C(1)YLSAEELNVF C(92)YLSAEELNVF 0 1 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8089599609375 2 672.810653 1343.60675 0.54959 0.00036977 0.88961 0.00059854 1.4392 0.00096831 672.8109554307078 91.227 0.48886 85.052 84.823 85.312 -6.1757 44 27 2 0 0 0 0.00015283 2 60238 60238;60363 92.491 79.449 1 11095000 5000 3413 3350 3426 5841;5842 5841 345 -0.05130604990608845 CYMAFLQSM 9 Unmodified _CYMAFLQSM_ 0 0 0 REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C REV__nc|ENSG00000164168|Q9NVA4-2|TMEM184C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.156982421875 3 365.155358 1092.44424 NaN NaN NaN NaN NaN NaN NaN 71.949 1 71.949 71.449 72.449 0 0 0 0 0.85852 1 40068 40068 0.20686 0 1 + 5001 21883 3351 3427 5843 5843 -0.09827983197942558 CYNPHTDHW 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YNPHTDHW_ C(1)YNPHTDHW C(63)YNPHTDHW 0 1 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000491112.1_1_1:185269520-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.4986267089844 3 410.49794 1228.47199 0.70663 0.00029007 -0.73267 -0.00030076 -0.026038 -1.0689E-05 410.4977846162944 26.735 0.28266 23.699 23.553 23.836 -3.0365 24 14 3 0 0 0 0.020973 1 14789 14789 62.573 53.19 1 7841300 5002 3240 3352 3428 5844 5844 333 -0.13310620621859925 CYNVVKDSW 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YNVVKDSW_ C(1)YNVVKDSW C(130)YNVVKDSW 0 1 0 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MSMS AL20221201_MKP_PDAC_01 4 585.7669067382812 2 585.766049 1169.51754 NaN NaN NaN NaN NaN NaN NaN 49.049 1 43.652 43.152 44.152 -5.3961 0 0 0 0.0058553 1 30603 30603 125.53 87.555 1 5003 3646 3353 3429 5845 5845 361 -0.060433951594859536 CYPEALLHF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YPEALLHF_ C(1)YPEALLHF C(50)YPEALLHF 0 1 0 ENSG00000100600|ENST00000334869|LGMN;ENST00000557725.5_1_14:93172722-93179177:-|nuORF ENSG00000100600|ENST00000334869|LGMN ENSG00000100600|ENST00000334869|LGMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2744750976562 2 575.273509 1148.53247 0.84693 0.00048721 0.85037 0.00048919 1.6973 0.00097641 575.2739959175282 74.203 0.52761 73.727 73.469 73.997 -0.47588 56 22 3 0 0 0 0.040472 1 40615 40615 49.669 31.534 1 4217200 5004 1850 3354 3430 5846 5846 178 -0.035859032914686395 CYPEALLHF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YPEALLHF_ C(1)YPEALLHF C(74)YPEALLHF 0 1 0 ENSG00000100600|ENST00000334869|LGMN;ENST00000557725.5_1_14:93172722-93179177:-|nuORF ENSG00000100600|ENST00000334869|LGMN ENSG00000100600|ENST00000334869|LGMN MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.274169921875 2 575.273509 1148.53247 0.98095 0.00056431 -0.30292 -0.00017426 0.67803 0.00039005 575.2731110363159 83.982 1.2196 77.806 77.005 78.224 -6.1757 134 65 3 0 0 0 0.012158 5 55048 54924;55048;55185;55312;55440 74.396 51.248 1 31218000 5005 1850 3354 3430 5847;5848;5849;5850;5851 5848 178 -0.035859032914686395 CYPRWNETF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YPRWNETF_ C(1)YPRWNETF C(140)YPRWNETF 0 1 0 nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000427076.5_1_7:43992756-44009363:-|nuORF;ENST00000523568.1_7:102228019-102246337:-|nuORF nc|ENSG00000105808|O43374-2|RASA4 nc|ENSG00000105808|O43374-2|RASA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.777099609375 2 636.776948 1271.53934 1.278 0.00081379 -0.36899 -0.00023496 0.909 0.00057883 636.7771098722816 58.74 0.4292 52.665 52.439 52.868 -6.0745 55 23 3 0 0 0 0.001066 1 37576 37576 139.14 104.74 1 27512000 5006 2366 3355 3431 5852 5852 233 -0.08556590410921672 CYPRWNETF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YPRWNETF_ 0 1 0 nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4;ENST00000427076.5_1_7:43992756-44009363:-|nuORF;ENST00000523568.1_7:102228019-102246337:-|nuORF nc|ENSG00000105808|O43374-2|RASA4 nc|ENSG00000105808|O43374-2|RASA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 636.776948 1271.53934 0.11433 7.28E-05 -0.18426 -0.00011734 -0.06994 -4.4536E-05 636.7767865817631 53.33 0.16049 52.878 52.803 52.963 -0.45173 0.10657 0.00021921 NaN 139.14 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 601390 5007 2366 3355 3431 233 -0.08556590410921672 CYQDERRETRE 11 Unmodified _CYQDERRETRE_ 0 0 0 REV__ENST00000281182.8_1_11:134130942-134131259:+|nuORF REV__ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.831298828125 2 742.830971 1483.64739 0.3897 0.00028948 -0.47915 -0.00035593 -0.089454 -6.6449E-05 742.8306165729642 46.702 0.60867 46.365 46.073 46.681 -0.33664 110 30 5 0 0 0 0.70147 1 25083 25083 2.4985 0 1 192600000 + 5008 25195 3356 3432 5853 5853 -0.07508870618312358 CYQEVSQCF 9 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YQEVSQC(Carbamidomethyl (C))F_ C(1)YQEVSQC(1)F C(100)YQEVSQC(100)F 0 2 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2400512695312 2 610.739173 1219.46379 1.0911 0.00066639 -0.40805 -0.00024921 0.68306 0.00041717 610.739262309494 49.644 0.40702 44.105 43.925 44.332 -5.5391 63 25 3 0 0 0 0.00856 2 30968 30968;31104 100.37 18.481 1 114760000 5009 7694 3357 3433 5854;5855 5854 747;748 -0.13715935653476663 CYRKGWLWRHH 11 Unmodified _CYRKGWLWRHH_ 0 0 0 ENST00000400788.8_1_6:157713817-157713931:-|nuORF ENST00000400788.8_1_6:157713817-157713931:-|nuORF ENST00000400788.8_1_6:157713817-157713931:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 771.3883056640625 2 771.388397 1540.76224 NaN NaN NaN NaN NaN NaN NaN 90.959 1 90.959 90.459 91.459 0 0 0 0 0.9435 1 50310 50310 0 0 1 5010 12878 3358 3434 5856 5856 0.013489481648548463 CYRPRPDSY 9 Unmodified _CYRPRPDSY_ 0 0 0 nc|ENSG00000140675|P31639-2|SLC5A2;ENSG00000140675|ENST00000330498|SLC5A2 nc|ENSG00000140675|P31639-2|SLC5A2 nc|ENSG00000140675|P31639-2|SLC5A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1785278320312 3 386.178319 1155.51313 0.027804 1.0737E-05 0.29999 0.00011585 0.32779 0.00012659 386.1784946846219 63.973 0.6708 63.973 63.756 64.427 0 51 28 3 0 0 0 0.58865 1 35643 35643 1.0715 0 1 1495600 5011 5262 3359 3435 5857 5857 -0.05840859582372104 CYSAGVFHL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSAGVFHL_ C(1)YSAGVFHL C(78)YSAGVFHL 0 1 0 nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12 nc|ENSG00000161955|O75888-5|TNFSF13 nc|ENSG00000161955|O75888-5|TNFSF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2451782226562 2 527.244752 1052.47495 1.0684 0.0005633 -0.50061 -0.00026394 0.56777 0.00029936 527.2449568642054 64.822 0.48631 58.646 58.431 58.917 -6.1757 44 26 2 0 0 0 0.010712 2 42092 41955;42092 78.445 28.776 1 15912000 5012 6819 3360 3436 5858;5859 5859 672 -0.04918745497047894 CYSAGVFHL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSAGVFHL_ 0 1 0 nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12 nc|ENSG00000161955|O75888-5|TNFSF13 nc|ENSG00000161955|O75888-5|TNFSF13 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.244752 1052.47495 0.41775 0.00022026 2.2465 0.0011845 2.6642 0.0014047 527.2476830219631 58.786 0.24716 58.786 58.63 58.877 0 0.070022 0.0027081 NaN 78.445 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1140000 5013 6819 3360 3436 672 -0.04918745497047894 CYSDAFAKL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSDAFAKL_ C(1)YSDAFAKL C(86)YSDAFAKL 0 1 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000589223.5_1_19:2102174-2111012:-|nuORF;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7501220703125 2 537.749867 1073.48518 0.88347 0.00047508 -0.1633 -8.7813E-05 0.72017 0.00038727 537.7496641177904 57.63 0.46894 51.603 51.335 51.804 -6.0275 41 25 2 0 0 0 0.0090524 2 36888 36770;36888 85.642 63.895 1 134870000 5014 889;16041 3361 3437 5860;5861 5861 78 -0.0486218256248776 CYSKIVDKL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSKIVDKL_ C(1)YSKIVDKL C(76)YSKIVDKL 0 1 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;ENST00000562668.1_16:18859095-18860659:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8709106445312 3 375.870603 1124.58998 0.80469 0.00030246 0.061416 2.3084E-05 0.86611 0.00032555 375.8706463508527 39.856 0.60426 35.327 34.936 35.54 -4.5294 116 42 4 0 0 0 0.011739 2 23581 23581;23710 75.571 50.515 1 477160000 5015 6500 3362 3438 5862;5863 5862 640 0.03266938914111961 CYSKIVDKL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSKIVDKL_ C(1)YSKIVDKL C(110)YSKIVDKL 0 1 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;ENST00000562668.1_16:18859095-18860659:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3026123046875 2 563.302267 1124.58998 0.45819 0.0002581 -0.84322 -0.00047499 -0.38503 -0.00021689 563.3019416432448 39.87 0.42456 35.34 35.115 35.54 -4.5294 79 31 4 0 0 0 0.0085526 2 23698 23698;23834 107.56 57.095 1 151230000 5016 6500 3362 3438 5864;5865 5864 640 0.03266938914111961 CYSLIDILL 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YSLIDILL_ C(1)YSLIDILL C(71)YSLIDILL 0 1 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000475558.5_1_3:72859059-72866479:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2996826171875 2 555.299193 1108.58383 0.89441 0.00049667 0.90877 0.00050464 1.8032 0.0010013 555.2996535852706 102.08 0.12466 95.903 95.833 95.957 -6.1757 8 5 2 0 0 0 0.013472 1 68533 68533 70.716 32.564 1 3979700 5017 5638 3363 3439 5866 5866 573 0.03388420682586002 CYTLINVPM 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YTLINVPM_ C(1)YTLINVPM C(60)YTLINVPM 0 1 0 ENSG00000129083|ENST00000439561|COPB1;ENST00000533096.5_1_11:14516256-14520474:-|nuORF ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7708129882812 2 555.769745 1109.52494 1.3811 0.00076755 0.92105 0.00051189 2.3021 0.0012794 555.7701852762805 88.206 0.31743 82.03 81.888 82.206 -6.1757 29 17 2 0 0 0 0.023164 1 58149 58149 60.39 34.99 1 15104000 5018 4113 3364 3440 5867 5867 412 -0.02544378883385434 CYTPRADSF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YTPRADSF_ C(1)YTPRADSF C(62)YTPRADSF 0 1 0 nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1;ENSG00000100191|ENST00000266086|SLC5A4 nc|ENSG00000100170|P13866-2|SLC5A1 nc|ENSG00000100170|P13866-2|SLC5A1 MSMS AL20221201_MKP_PDAC_01 4 558.7672729492188 2 558.742573 1115.47059 NaN NaN NaN NaN NaN NaN NaN 37.795 1 33.426 32.926 33.926 -4.3689 0 0 0 0.041018 1 22216 22216 61.602 40.731 1 5019 1765 3365 3441 5868 5868 169 -0.08252254710623674 CYTTQSYQW 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YTTQSYQW_ C(1)YTTQSYQW C(78)YTTQSYQW 0 1 0 nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000469140.2_1_14:105929892-105933123:+|nuORF nc|ENSG00000182979|Q13330-3|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.7538452148438 2 618.753138 1235.49172 0.86182 0.00053325 0.88465 0.00054738 1.7465 0.0010806 618.7533904815834 55.6 0.35357 49.679 49.507 49.861 -5.9211 31 20 2 0 0 0 0.010818 2 35491 35355;35491 78.149 62.901 1 14719000 5020 9106 3366 3442 5869;5870 5870 853 -0.11660289401743285 CYVDEEPF 8 Unmodified _CYVDEEPF_ 0 0 0 REV__nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14 REV__nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.1989440917969 2 501.199676 1000.3848 1.0089 0.00050569 -1.3323 -0.00066776 -0.32337 -0.00016207 501.1987685582754 39.245 0.30097 34.794 34.645 34.946 -4.4509 30 18 2 0 0 0 0.80143 1 23357 23357 5.7604 0 1 11402000 + 5021 29990 3367 3443 5871 5871 -0.11537839616119072 CYVKKDDLF 9 Unmodified _CYVKKDDLF_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MSMS AL20221201_MKP_PDAC_01 4 377.5223999023438 3 377.523204 1129.54778 NaN NaN NaN NaN NaN NaN NaN 15.843 1 13.286 12.786 13.786 -2.557 0 0 0 0.84369 1 8163 8163 1.1933 0 1 + 5022 19133 3368 3444 5872 5872 -0.011810364942903107 CYVLFNFYF 9 Unmodified _CYVLFNFYF_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2799072265625 2 608.280803 1214.54705 0.48497 0.000295 1.0655 0.00064815 1.5505 0.00094315 608.2813430067282 87.905 0.67261 87.4 87.101 87.774 -0.50423 114 30 5 0 0 0 0.54444 1 47964 47964 4.756 4.756 1 122020000 + 5023 29003 3369 3445 5873 5873 -0.051638311433180206 CYVPSEVHCTF 11 2 Carbamidomethyl (C) _C(Carbamidomethyl (C))YVPSEVHC(Carbamidomethyl (C))TF_ C(1)YVPSEVHC(1)TF C(82)YVPSEVHC(82)TF 0 2 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.2980346679688 2 699.79448 1397.57441 0.5445 0.00038104 0.23689 0.00016577 0.78139 0.00054681 700.2958460567625 52.663 0.27721 46.929 46.764 47.042 -5.7345 33 15 3 0 0 0 0.0011251 1 33213 33213 81.89 59.154 1 36907000 5024 1992 3370 3446 5874 5874 196;197 -0.1084771566524978 CYVQPQWVF 9 Carbamidomethyl (C) _C(Carbamidomethyl (C))YVQPQWVF_ C(1)YVQPQWVF C(60)YVQPQWVF 0 1 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30975561-30975981:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.788330078125 2 613.786784 1225.55902 0.52621 0.00032298 -0.56144 -0.0003446 -0.035222 -2.1619E-05 613.7866065717036 93.569 0.48338 87.394 87.22 87.703 -6.1757 65 29 3 0 0 0 0.023164 1 61883 61883 60.39 41.133 1 22593000 5025 1742 3371 3447 5875 5875 166 -0.04474214400124765 CYWENLLKI 9 Unmodified _CYWENLLKI_ 0 0 0 OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5370178222656 3 394.538965 1180.59507 -0.28644 -0.00011301 -1.7797 -0.00070217 -2.0662 -0.00081518 394.5380233048742 36.048 0.40772 36.073 35.864 36.272 0.024971 31 18 2 0 0 0 0.53557 1 19062 19062 5.2969 3.2109 1 2078100 5026 16679 3372 3448 5876 5876 0.011992427767154368 CYWENLLKI 9 Unmodified _CYWENLLKI_ 0 0 0 OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant OPRM1|p.W228C|1|0.17|ENSG00000112038|chr6:154090992-154090992|G/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5706176757812 3 394.538965 1180.59507 -0.1304 -5.1446E-05 -2.3384 -0.00092257 -2.4688 -0.00097402 394.5379706329059 33.166 0.19959 33.195 33.117 33.317 0.028934 18 8 3 0 0 0 0.21572 1 17482 17482 4.5289 0 1 875180 5027 16679 3372 3448 5877 5877 0.011992427767154368 DAAAHLAQA 9 Unmodified _DAAAHLAQA_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2187805175781 2 434.219591 866.42463 NaN NaN NaN NaN NaN NaN NaN 8.2431 1 8.2606 7.7606 8.7606 0.017581 0 0 0 0.82739 1 4108 4108 4.3292 1.44 1 5028 1150 3373 3449 5878 5878 -0.013925318305382461 DAAALISYY 9 Unmodified _DAAALISYY_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7470092773438 2 493.745108 985.475663 0.29753 0.0001469 0.40594 0.00020043 0.70346 0.00034733 493.7450688930565 68.079 0.19238 68.079 67.992 68.184 0 14 9 2 0 0 0 0.2143 1 37944 37944 21.747 13.153 1 379470 5029 4014 3374 3450 5879 5879 -0.017656275763442864 DAAAVDFQF 9 Unmodified _DAAAVDFQF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2284851074219 2 492.227082 982.439611 0.2169 0.00010676 1.4234 0.00070062 1.6403 0.00080738 492.22764023466505 72.419 0.52083 72.419 72.178 72.699 0 40 21 3 0 0 0 0.23158 2 40356 40252;40356 20.454 10.27 1 1365200 5030 16693 3375 3451 5880;5881 5881 -0.052310847531884974 DAAAVDFQF 9 Unmodified _DAAAVDFQF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MSMS AL20221201_MKP_PDAC_01 4 492.22802734375 2 492.227082 982.439611 NaN NaN NaN NaN NaN NaN NaN 80.743 1 74.568 74.068 75.068 -6.1757 0 0 0 0.39043 1 52979 52979 20.454 3.5113 1 5031 16693 3375 3451 5882 5882 -0.052310847531884974 DAAAVDFQF 9 Unmodified _DAAAVDFQF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MSMS AL20221201_MKP_PDAC_01 4 492.2274475097656 2 492.227082 982.439611 NaN NaN NaN NaN NaN NaN NaN 80.972 1 74.796 74.296 75.296 -6.1757 0 0 0 0.26667 1 53130 53130 26.884 12.045 1 5032 16693 3375 3451 5883 5883 -0.052310847531884974 DAADIRFVY 9 Unmodified _DAADIRFVY_ 0 0 0 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2687377929688 2 535.269281 1068.52401 0.41289 0.00022101 -1.0702 -0.00057285 -0.65731 -0.00035184 535.2687175084263 59.315 0.50739 59.315 59.095 59.602 0 66 21 5 0 0 0 0.021948 2 32981 32981;33089 61.602 33.973 1 82505000 5033 2032 3376 3452 5884;5885 5884 -0.007511339364327796 DAADIRFVY 9 Unmodified _DAADIRFVY_ 0 0 0 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2694091796875 2 535.269281 1068.52401 0.69874 0.00037401 0.032334 1.7307E-05 0.73108 0.00039132 535.2692838544301 66.216 0.54321 60.041 59.805 60.349 -6.1757 86 30 4 0 0 0 0.047714 2 43031 43031;43159 45.74 24.203 1 177200000 5034 2032 3376 3452 5886;5887 5886 -0.007511339364327796 DAAGPHEAF 9 Unmodified _DAAGPHEAF_ 0 0 0 nc|ENSG00000121903|P17040-4|ZSCAN20;nc|ENSG00000121903|P17040-3|ZSCAN20;ENSG00000121903|ENST00000684572|ZSCAN20 nc|ENSG00000121903|P17040-4|ZSCAN20 nc|ENSG00000121903|P17040-4|ZSCAN20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7037353515625 2 457.703774 913.392996 -0.24374 -0.00011156 -0.26157 -0.00011972 -0.5053 -0.00023128 457.7038536530409 27.604 0.27229 27.604 27.449 27.721 0 22 12 2 0 0 0 0.12424 1 14200 14200 30.637 14.789 1 2085500 5035 3608 3377 3453 5888 5888 -0.06716524584487615 DAAHEFTVY 9 Unmodified _DAAHEFTVY_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.73779296875 2 526.737814 1051.46108 0.43271 0.00022793 -0.37891 -0.00019959 0.053797 2.8337E-05 526.7375898693539 47.09 0.33399 47.09 46.98 47.314 0 61 15 5 0 0 0 0.14602 1 25801 25801 28.487 15.955 1 81779000 5036 3909 3378 3454 5889 5889 -0.06259699724478196 DAAHEFTVY 9 Unmodified _DAAHEFTVY_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7384643554688 2 526.737814 1051.46108 1.2661 0.00066689 -0.029752 -1.5671E-05 1.2363 0.00065122 526.7378353241775 53.8 0.5004 47.996 47.772 48.272 -5.8042 89 30 4 0 0 0 0.042911 2 34084 33950;34084 48.346 19.859 1 136620000 5037 3909 3378 3454 5890;5891 5891 -0.06259699724478196 DAAIVLSTY 9 Unmodified _DAAIVLSTY_ 0 0 0 nc|ENSG00000144401|Q8WXB1-2|METTL21A;ENST00000471128.1_1_2:208485467-208489843:-|nuORF;ENSG00000144401|ENST00000411432|METTL21A nc|ENSG00000144401|Q8WXB1-2|METTL21A nc|ENSG00000144401|Q8WXB1-2|METTL21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.5008544921875 1 952.498589 951.491313 -0.085397 -8.134E-05 1.7819 0.0016973 1.6965 0.0016159 952.5005277268374 61.151 0.23974 61.151 60.975 61.215 0 11 9 2 0 0 0 0.51218 1 34084 34084 6.7232 2.7788 1 225520 5038 5605 3379 3455 5892 5892 0.013626589407067513 DAAKNQVAM 9 Unmodified _DAAKNQVAM_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.234619140625 2 474.234384 946.454216 0.54344 0.00025772 -0.32019 -0.00015184 0.22325 0.00010587 474.2343422917652 22.468 0.48432 19.69 19.388 19.872 -2.7784 51 26 3 0 0 0 0.0082475 2 12113 12009;12113 92.653 44.307 1 7091900 5039 2688 3380 3456 5893;5894 5894 -0.021153358766923702 DAALHVVLY 9 Unmodified _DAALHVVLY_ 0 0 0 ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENST00000506815.5_3_4:106326917-106395140:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7769470214844 2 500.776742 999.538931 0.37717 0.00018888 0.21405 0.00010719 0.59122 0.00029607 500.7771308509615 63.083 0.25587 63.083 62.963 63.219 0 19 10 2 0 0 0 0.10734 1 35185 35185 32.305 9.1571 1 1722600 5040 14528 3381 3457 5895 5895 0.039143579315805255 DAALLTRLWEL 11 Unmodified _DAALLTRLWEL_ 0 0 0 REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8663330078125 2 650.86662 1299.71869 0.43398 0.00028246 -1.068 -0.00069512 -0.63401 -0.00041265 650.8664763652599 80.389 0.40977 80.446 80.293 80.703 0.057587 32 18 2 0 0 0 0.5551 1 44403 44403 13.615 2.8154 1 10262000 + 5041 28555 3382 3458 5896 5896 0.08081617148695841 DAALLTRLWEL 11 Unmodified _DAALLTRLWEL_ 0 0 0 REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8759155273438 2 650.86662 1299.71869 4.2885 0.0027912 -0.5399 -0.0003514 3.7486 0.0024398 650.8663285059731 98.68 0.34673 98.652 98.458 98.804 -0.028282 52 12 6 0 0 0 0.10451 1 54755 54755 41.956 3.78 1 366880000 + 5042 28555 3382 3458 5897 5897 0.08081617148695841 DAALLTRLWEL 11 Unmodified _DAALLTRLWEL_ 0 0 0 REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 650.86662 1299.71869 0.74011 0.00048171 -1.539 -0.0010017 -0.79892 -0.00051999 650.8658085721484 81.072 0.4584 80.58 80.334 80.792 -0.49247 0.066728 -0.00011411 NaN 13.615 88 27 4 NaN NaN NaN NaN 0 NaN NaN 0 43599000 + 5043 28555 3382 3458 0.08081617148695841 DAALLTRLWEL 11 Unmodified _DAALLTRLWEL_ 0 0 0 REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 650.86662 1299.71869 0.43398 0.00028246 -1.068 -0.00069512 -0.63401 -0.00041265 650.8664763652599 80.389 0.40977 80.446 80.293 80.703 0.057587 -0.066728 0.00049907 NaN 13.615 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 10262000 + 5044 28555 3382 3458 0.08081617148695841 DAANLRETF 9 Unmodified _DAANLRETF_ 0 0 0 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7556762695312 2 518.756538 1035.49852 0.33492 0.00017374 -0.23789 -0.00012341 0.097028 5.0334E-05 518.7564618523114 39.765 0.29655 39.765 39.616 39.912 0 47 14 4 0 0 0 0.0082981 2 21291 21291;21406 96.936 32.975 1 24751000 5045 7175 3383 3459 5898;5899 5898 -0.017806084588755766 DAANVLLQL 9 Unmodified _DAANVLLQL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7741394042969 2 478.7742 955.533846 0.26065 0.00012479 0.70952 0.0003397 0.97016 0.00046449 478.77408585056406 84.912 0.28601 84.912 84.719 85.005 0 20 13 2 0 0 0 0.5029 1 47020 47020 7.2892 2.0586 1 619200 5046 1444 3384 3460 5900 5900 0.05430054068960999 DAAPIPNQY 9 Unmodified _DAAPIPNQY_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2765502929688 2 494.740357 987.46616 -0.14838 -7.3408E-05 -0.36764 -0.00018189 -0.51602 -0.0002553 494.7403739482244 40.52 0.11025 40.52 40.491 40.601 0 8 5 2 0 0 0 0.1474 1 21815 21815 28.487 10.352 1 2276200 5047 3197 3385 3461 5901 5901 -0.028073958618506367 DAAQLPHDY 9 Unmodified _DAAQLPHDY_ 0 0 0 ENSG00000148730|ENST00000373218|EIF4EBP2 ENSG00000148730|ENST00000373218|EIF4EBP2 ENSG00000148730|ENST00000373218|EIF4EBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2345581054688 2 515.235439 1028.45632 -0.33063 -0.00017035 -1.2799 -0.00065947 -1.6106 -0.00082983 515.2353365708391 33.65 0.27814 33.65 33.526 33.804 0 37 21 2 0 0 0 0.014417 2 17626 17626;17738 69.105 40.023 1 9658100 5048 5959 3386 3462 5902;5903 5902 -0.05676583867216323 DAARLQAAY 9 Unmodified _DAARLQAAY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7539978027344 2 489.753798 977.493044 -0.28785 -0.00014098 -0.24558 -0.00012027 -0.53344 -0.00026125 489.7536989817802 30.823 0.40289 30.823 30.628 31.031 0 52 19 4 0 0 0 0.01958 2 15975 15975;16078 63.961 27.833 1 32335000 5049 3108 3387 3463 5904;5905 5904 0.0033971274931445805 DAARLQAAY 9 Unmodified _DAARLQAAY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7549133300781 2 489.753798 977.493044 0.57568 0.00028194 0.033923 1.6614E-05 0.6096 0.00029856 489.75360956102173 35.437 0.43307 31.244 30.992 31.425 -4.1928 68 26 3 0 0 0 0.011671 2 20446 20446;20582 75.761 31.903 1 92909000 5050 3108 3387 3463 5906;5907 5906 0.0033971274931445805 DAARLVMLY 9 Oxidation (M) _DAARLVM(Oxidation (M))LY_ DAARLVM(1)LY DAARLVM(50)LY 0 0 1 nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45 nc|ENSG00000136631|Q9NRW7-2|VPS45 nc|ENSG00000136631|Q9NRW7-2|VPS45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2811279296875 2 534.281334 1066.54812 0.43148 0.00023053 -1.2885 -0.00068841 -0.857 -0.00045788 534.2807294268108 57.21 0.31895 56.72 56.539 56.858 -0.48974 44 14 4 0 0 0 0.040683 1 31044 31044 49.554 24.155 1 12759000 5051 4839 3388 3464 5908 5908 873 0.017503832255897578 DAASELIVY 9 Unmodified _DAASELIVY_ 0 0 0 ENSG00000166479|ENST00000299608|TMX3;nc|ENSG00000166479|Q96JJ7-2|TMX3;ENST00000569053.5_1_18:66357168-66367709:-|nuORF ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7514038085938 2 490.75039 979.486227 0.097401 4.7799E-05 1.2804 0.00062837 1.3778 0.00067617 490.75119955130157 65.156 0.26316 65.156 65.033 65.296 0 18 10 2 0 0 0 0.087258 1 36378 36378 36.044 12.896 1 897710 5052 7496 3389 3465 5909 5909 -0.004336449219067617 DAASLKDVF 9 Unmodified _DAASLKDVF_ 0 0 0 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2511596679688 2 483.250557 964.486562 0.91622 0.00044276 -0.47055 -0.00022739 0.44567 0.00021537 483.2505592647724 54.302 0.49421 54.302 54.011 54.505 0 45 22 3 0 0 0 0.040683 1 30137 30137 49.554 15.153 1 3477700 5053 4253 3390 3466 5910 5910 0.002897747979545784 DAATVWMQKF 10 Unmodified _DAATVWMQKF_ 0 0 0 REV__ENSG00000169717|ENST00000378404|ACTRT2 REV__ENSG00000169717|ENST00000378404|ACTRT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.4423217773438 2 598.792066 1195.56958 NaN NaN NaN NaN NaN NaN NaN 76.798 1 76.319 75.819 76.819 -0.47945 0 0 0 0.97302 1 42048 42048 3.5965 0 1 + 5054 22419 3391 3467 5911 5911 -0.020382317457233512 DAAVYQVTY 9 Unmodified _DAAVYQVTY_ 0 0 0 ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1;ENST00000506888.5_1_6:88187111-88216600:+|nuORF ENSG00000164414|ENST00000369552|SLC35A1 ENSG00000164414|ENST00000369552|SLC35A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.248779296875 2 515.248015 1028.48148 NaN NaN NaN NaN NaN NaN NaN 48.809 1 48.809 48.309 49.309 0 0 0 0 0.20153 1 26808 26808 30.637 12.502 1 5055 7192 3392 3468 5912 5912 -0.03162529064638875 DACAVQDPFL 10 Unmodified _DACAVQDPFL_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MSMS AL20221201_MKP_PDAC_01 4 539.2993774414062 2 539.747324 1077.4801 NaN NaN NaN NaN NaN NaN NaN 57.239 1 51.212 50.712 51.712 -6.0275 0 0 0 0.37462 1 36600 36600 32.786 8.7651 1 + 5056 29730 3393 3469 5913 5913 -0.055544864250805404 DACDIQEKY 9 Carbamidomethyl (C) _DAC(Carbamidomethyl (C))DIQEKY_ DAC(1)DIQEKY DAC(93)DIQEKY 0 1 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2457885742188 2 571.245146 1140.47574 1.2158 0.00069449 0.013018 7.4367E-06 1.2288 0.00070193 571.244967305566 30.53 0.27635 27.033 26.877 27.153 -3.497 22 13 2 0 0 0 0.0081887 1 17210 17210 93.166 58.764 1 25806000 5057 8786 3394 3470 5914 5914 834 -0.08887995638633583 DACELIERY 9 Unmodified _DACELIERY_ 0 0 0 ENST00000508652.5_1_4:164415907-164436651:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000508652.5_1_4:164415907-164436651:+|nuORF ENST00000508652.5_1_4:164415907-164436651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2591552734375 2 556.258056 1110.50156 0.63279 0.00035199 -0.93221 -0.00051855 -0.29942 -0.00016656 556.2583946398156 58.035 0.2337 58.035 57.869 58.103 0 14 9 2 0 0 0 0.080011 1 32293 32293 47.594 28.337 1 1389600 5058 10097 3395 3471 5915 5915 -0.04927101396356193 DACELIERY 9 Carbamidomethyl (C) _DAC(Carbamidomethyl (C))ELIERY_ DAC(1)ELIERY DAC(42)ELIERY 0 1 0 ENST00000508652.5_1_4:164415907-164436651:+|nuORF;ENSG00000198498|ENST00000358572|TMA16 ENST00000508652.5_1_4:164415907-164436651:+|nuORF ENST00000508652.5_1_4:164415907-164436651:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 585.3010864257812 2 584.768788 1167.52302 1.0957 0.00064072 0.4782 0.00027964 1.5739 0.00092035 584.7686753563951 55.316 0.60942 49.395 49.078 49.688 -5.9211 66 37 4 0 0 0 0.098534 1 35198 35198 41.956 18.166 1 154090000 5059 10097 3395 3472 5916 5916 915 -0.05403716367641209 DACMYQEF 8 Unmodified _DACMYQEF_ 0 0 0 REV__ENST00000491327.5_1_6:31938351-31939452:-|nuORF REV__ENST00000491327.5_1_6:31938351-31939452:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2497253417969 2 503.685878 1005.3572 0.65579 0.00033031 -1.0449 -0.00052631 -0.38912 -0.00019599 503.6842452226831 59.415 0.31451 59.415 59.262 59.577 0 30 13 3 0 0 0 8.7369 1 33025 33025 2.3027 1.5091 1 2969400 + 5060 24162 3396 3473 5917 5917 -0.14526066147993788 DACRYLQTY 9 Carbamidomethyl (C) _DAC(Carbamidomethyl (C))RYLQTY_ DAC(1)RYLQTY DAC(110)RYLQTY 0 1 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000603658.1_1_10:122663582-122664949:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.268310546875 2 595.268955 1188.52336 0.0916 5.4527E-05 -0.12729 -7.577E-05 -0.035687 -2.1244E-05 595.2689734462527 45.423 0.49036 40.468 40.239 40.729 -4.9549 99 33 4 0 0 0 0.0061223 3 27746 27746;27886;28032 114.2 68.181 1 117310000 5061 3488 3397 3474 5918;5919;5920 5918 351 -0.06336296647782547 DADDEDDGHL 10 Unmodified _DADDEDDGHL_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A MSMS AL20221201_MKP_PDAC_01 4 367.8040466308594 3 367.803752 1100.38943 NaN NaN NaN NaN NaN NaN NaN 17.789 1 15.203 14.703 15.703 -2.5866 0 0 0 0.98914 1 9331 9331 0.77653 0 1 5062 1360 3398 3475 5921 5921 -0.15675283939663132 DADDMCMICF 10 Unmodified _DADDMCMICF_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7907104492188 2 582.197438 1162.38032 0.14873 8.6588E-05 -0.9265 -0.00053941 -0.77777 -0.00045282 582.1970372045283 39.905 0.23511 39.905 39.775 40.01 0 30 11 4 0 0 0 0.23981 1 21440 21440 0.45834 0 1 2853700 5063 315 3399 3476 5922 5922 -0.19437131417180353 DADELYHEHVY 11 Unmodified _DADELYHEHVY_ 0 0 0 REV__ENSG00000106392|ENST00000436587|C1GALT1 REV__ENSG00000106392|ENST00000436587|C1GALT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.8430786132812 2 695.799131 1389.58371 0.272 0.00018926 3.9253 0.0027312 4.1973 0.0029205 696.3032209010648 51.975 0.075531 51.542 51.494 51.569 -0.43367 5 3 2 0 0 0 0.30452 1 28042 28042 3.2813 1.4371 1 969670 + 5064 18504 3400 3477 5923 5923 -0.09549907783707567 DADKRKHF 8 Unmodified _DADKRKHF_ 0 0 0 nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL nc|ENSG00000124232|Q9UBG7-2|RBPJL nc|ENSG00000124232|Q9UBG7-2|RBPJL MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7666625976562 2 508.76724 1015.51993 0.62229 0.0003166 1.8637 0.00094819 2.486 0.0012648 508.76813095800304 45.796 0.52131 40.841 40.582 41.104 -4.9549 61 34 2 0 0 0 0.63229 1 28182 28182 23.148 2.6948 1 54945000 5065 3770 3401 3478 5924 5924 0.01278821360517668 DAEQRRVKF 9 Unmodified _DAEQRRVKF_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2840576171875 2 574.812179 1147.60981 0.50067 0.00028779 2.0544 0.0011809 2.5551 0.0014687 574.8132656119682 52.795 0.18061 52.795 52.678 52.858 0 13 7 2 0 0 0 0.20727 1 29192 29192 1.8442 0 1 1900300 5066 5298 3402 3479 5925 5925 0.04190450969099402 DAFAEWTEM 9 Oxidation (M) _DAFAEWTEM(Oxidation (M))_ DAFAEWTEM(1) DAFAEWTEM(74) 0 0 1 nc|ENSG00000116729|Q5T9L3-2|WLS;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2214965820312 2 558.221139 1114.42773 0.43417 0.00024236 -0.38949 -0.00021742 0.044677 2.494E-05 558.2210428621695 58.889 0.51534 58.889 58.654 59.169 0 70 22 4 0 0 0 0.012148 2 32730 32730;32843 74.423 61.891 1 26099000 5067 16143 3403 3480 5926;5927 5926 1798 -0.12491069558700474 DAFAEWTEM 9 Oxidation (M) _DAFAEWTEM(Oxidation (M))_ DAFAEWTEM(1) DAFAEWTEM(67) 0 0 1 nc|ENSG00000116729|Q5T9L3-2|WLS;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2229614257812 2 558.221139 1114.42773 0.51983 0.00029018 0.72467 0.00040453 1.2445 0.00069471 558.2215802066877 59.597 0.30622 59.106 58.987 59.293 -0.49079 25 14 2 0 0 0 0.016184 1 32439 32439 67.344 51.497 1 1937400 5068 16143 3403 3480 5928 5928 1798 -0.12491069558700474 DAFAEWTEM 9 Oxidation (M) _DAFAEWTEM(Oxidation (M))_ DAFAEWTEM(1) DAFAEWTEM(71) 0 0 1 nc|ENSG00000116729|Q5T9L3-2|WLS;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.221435546875 2 558.221139 1114.42773 0.75911 0.00042375 -0.91944 -0.00051325 -0.16033 -8.95E-05 558.2207288390815 68.015 0.392 61.839 61.636 62.028 -6.1757 50 22 3 0 0 0 0.013323 1 44336 44336 71.134 55.286 1 21683000 5069 16143 3403 3480 5929 5929 1798 -0.12491069558700474 DAFAEWTEM 9 Unmodified _DAFAEWTEM_ 0 0 0 nc|ENSG00000116729|Q5T9L3-2|WLS;nc|ENSG00000116729|Q5T9L3-3|WLS;ENSG00000116729|ENST00000262348|WLS nc|ENSG00000116729|Q5T9L3-2|WLS nc|ENSG00000116729|Q5T9L3-2|WLS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2232055664062 2 550.223682 1098.43281 NaN NaN NaN NaN NaN NaN NaN 76.978 1 76.978 76.478 77.478 0 0 0 0 0.6306 1 42794 42794 11.64 4.9171 1 5070 16143 3403 3481 5930 5930 -0.11246765696068906 DAFAIPALC 9 Unmodified _DAFAIPALC_ 0 0 0 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2144470214844 2 460.730946 919.447339 0.93357 0.00043013 -0.10626 -4.8955E-05 0.82732 0.00038117 460.7308768748221 49.809 0.23072 49.809 49.716 49.946 0 17 10 2 0 0 0 0.19613 1 27511 27511 7.9102 7.9102 1 2058100 5071 10405 3404 3482 5931 5931 -0.015606487572881633 DAFANFANF 9 Unmodified _DAFANFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7276611328125 2 508.727249 1015.43995 0.36433 0.00018535 0.40588 0.00020648 0.77022 0.00039183 508.72741391786036 81.349 0.36966 81.349 81.121 81.491 0 37 16 3 0 0 0 0.05447 2 45183 45085;45183 43.858 29.277 1 1790900 5072 2954 3405 3483 5932;5933 5933 -0.06715665033334517 DAFANFANF 9 Unmodified _DAFANFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7278747558594 2 508.727249 1015.43995 0.40536 0.00020622 0.40619 0.00020664 0.81156 0.00041286 508.727565451377 81.926 0.48834 81.431 81.185 81.674 -0.49521 53 18 4 0 0 0 0.013323 2 44903 44804;44903 71.134 25.113 1 12126000 5073 2954 3405 3483 5934;5935 5935 -0.06715665033334517 DAFANFANF 9 Unmodified _DAFANFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7274780273438 2 508.727249 1015.43995 0.90304 0.0004594 0.44181 0.00022476 1.3448 0.00068416 508.7274538774551 89.981 0.48144 83.806 83.526 84.008 -6.1757 69 26 3 0 0 0 0.022193 3 59408 59291;59408;59544 61.357 29.952 1 48735000 5074 2954 3405 3483 5936;5937;5938 5937 -0.06715665033334517 DAFANFANF 9 Unmodified _DAFANFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.727249 1015.43995 1.6144 0.00082127 0.60717 0.00030888 2.2215 0.0011302 508.7274015487414 81.45 0.29523 81.51 81.315 81.61 0.059929 0.080279 0.0001648 NaN 71.134 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1550000 5075 2954 3405 3483 -0.06715665033334517 DAFCCCNFNF 10 Unmodified _DAFCCCNFNF_ 0 0 0 REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2843627929688 2 592.203912 1182.39327 0.35822 0.00021214 -1.9882 -0.0011774 -1.63 -0.00096528 592.2027048118674 57.648 0.42384 57.648 57.467 57.891 0 53 20 4 0 0 0 0.23634 1 32027 32027 6.7232 4.6634 1 14604000 + 5076 27984 3406 3484 5939 5939 -0.19062932242809438 DAFDDVVKY 9 Unmodified _DAFDDVVKY_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2530517578125 2 536.253297 1070.49204 0.65842 0.00035308 -0.014537 -7.7954E-06 0.64388 0.00034528 536.253208998337 53.85 0.34715 53.85 53.685 54.032 0 55 15 5 0 0 0 0.011671 2 29822 29822;29937 75.761 50.362 1 86852000 5077 6543 3407 3485 5940;5941 5940 -0.04038546410242816 DAFDDVVKY 9 Unmodified _DAFDDVVKY_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.25244140625 2 536.253297 1070.49204 NaN NaN NaN NaN NaN NaN NaN 54.461 1 53.994 53.494 54.494 -0.46664 0 0 0 0.43483 1 29511 29511 18.146 2.3781 1 5078 6543 3407 3485 5942 5942 -0.04038546410242816 DAFDDVVKY 9 Unmodified _DAFDDVVKY_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2520751953125 2 536.253297 1070.49204 0.89992 0.00048258 -0.25158 -0.00013491 0.64834 0.00034768 536.252968366314 61.781 0.45683 55.605 55.367 55.823 -6.1757 54 23 3 0 0 0 0.036857 2 39737 39737;39873 51.63 28.894 1 86070000 5079 6543 3407 3485 5943;5944 5943 -0.04038546410242816 DAFDFNVSL 9 Unmodified _DAFDFNVSL_ 0 0 0 ENSG00000089818|ENST00000339754|NECAP1;ENST00000542095.6_2_12:8234884-8244447:+|nuORF ENSG00000089818|ENST00000339754|NECAP1 ENSG00000089818|ENST00000339754|NECAP1 MSMS AL20221201_MKP_PDAC_01 4 514.2404174804688 2 514.24019 1026.46583 NaN NaN NaN NaN NaN NaN NaN 97.49 1 91.314 90.814 91.814 -6.1757 0 0 0 0.10759 1 64607 64607 41.84 9.5341 1 5080 1538 3408 3486 5945 5945 -0.046348155816986036 DAFDFNVSL 9 Unmodified _DAFDFNVSL_ 0 0 0 ENSG00000089818|ENST00000339754|NECAP1;ENST00000542095.6_2_12:8234884-8244447:+|nuORF ENSG00000089818|ENST00000339754|NECAP1 ENSG00000089818|ENST00000339754|NECAP1 MSMS AL20221201_MKP_PDAC_01 4 514.2402954101562 2 514.24019 1026.46583 NaN NaN NaN NaN NaN NaN NaN 97.701 1 91.526 91.026 92.026 -6.1757 0 0 0 0.074615 1 64748 64748 49.933 35.095 1 5081 1538 3408 3486 5946 5946 -0.046348155816986036 DAFDKGSLF 9 Unmodified _DAFDKGSLF_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2425842285156 2 500.242732 998.470912 0.57013 0.0002852 0.95798 0.00047922 1.5281 0.00076443 500.243102028902 57.949 0.2994 57.949 57.736 58.036 0 19 12 2 0 0 0 0.15471 1 32225 32225 27.629 10.687 1 1344200 5082 7963 3409 3487 5947 5947 -0.02838511719073722 DAFEFHEAF 9 Unmodified _DAFEFHEAF_ 0 0 0 nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB nc|ENSG00000138029|P55084-2|HADHB nc|ENSG00000138029|P55084-2|HADHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7379760742188 2 556.737814 1111.46108 0.40386 0.00022485 -0.98952 -0.0005509 -0.58565 -0.00032606 556.737556953641 64.309 0.6735 64.309 64.071 64.745 0 119 31 7 0 0 0 0.015445 3 35891 35786;35891;35995 68.081 51.138 1 61494000 5083 5004 3410 3488 5948;5949;5950 5949 -0.090196997244675 DAFEFHEAF 9 Unmodified _DAFEFHEAF_ 0 0 0 nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB nc|ENSG00000138029|P55084-2|HADHB nc|ENSG00000138029|P55084-2|HADHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7379760742188 2 556.737814 1111.46108 0.63588 0.00035402 0.34349 0.00019123 0.97937 0.00054525 556.7379443814044 64.882 0.40829 64.397 64.231 64.639 -0.48492 61 18 4 0 0 0 0.012148 2 35365 35365;35462 74.423 49.023 1 12883000 5084 5004 3410 3488 5951;5952 5951 -0.090196997244675 DAFEFHEAF 9 Unmodified _DAFEFHEAF_ 0 0 0 nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB nc|ENSG00000138029|P55084-2|HADHB nc|ENSG00000138029|P55084-2|HADHB MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.738525390625 2 556.737814 1111.46108 1.145 0.00063746 0.076099 4.2367E-05 1.2211 0.00067983 556.7377007631595 70.74 0.62427 64.564 64.296 64.921 -6.1757 85 32 3 0 0 0 0.0083938 3 46118 46118;46240;46367 108 75.211 1 154790000 5085 5004 3410 3488 5953;5954;5955 5953 -0.090196997244675 DAFEFHEAF 9 Unmodified _DAFEFHEAF_ 0 0 0 nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB nc|ENSG00000138029|P55084-2|HADHB nc|ENSG00000138029|P55084-2|HADHB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.737814 1111.46108 1.0618 0.00059114 -0.4819 -0.00026829 0.5799 0.00032285 556.737854968542 64.406 0.23012 64.395 64.318 64.548 -0.010529 -0.021168 -0.0003148 NaN 108 18 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2616900 5086 5004 3410 3488 -0.090196997244675 DAFENFALDF 10 Unmodified _DAFENFALDF_ 0 0 0 nc|ENSG00000080561|Q9UJV3-2|MID2;ENSG00000080561|ENST00000262843|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8447875976562 3 396.845111 1187.5135 -0.24359 -9.6669E-05 -0.73055 -0.00028992 -0.97414 -0.00038658 396.8450644337171 34.546 0.36425 34.355 34.2 34.564 -0.19132 41 16 3 0 0 0 0.70895 1 18144 18144 1.9064 0.25375 1 5204000 5087 1299 3411 3489 5956 5956 -0.07275161381517137 DAFGGPIWSM 10 Unmodified _DAFGGPIWSM_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4;ENST00000569800.5_1_16:69167425-69171817:+|nuORF ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MSMS AL20221201_MKP_PDAC_01 4 540.7442016601562 2 540.744585 1079.47462 NaN NaN NaN NaN NaN NaN NaN 98.075 1 91.899 91.399 92.399 -6.1757 0 0 0 0.44191 1 65015 65015 29.082 2.7403 1 5088 5299 3412 3490 5957 5957 -0.061941652169025474 DAFHFVSY 8 Unmodified _DAFHFVSY_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2244873046875 2 493.224342 984.434132 0.28804 0.00014207 1.217 0.00060025 1.505 0.00074232 493.2248199544066 61.242 0.36534 61.242 61.024 61.389 0 38 15 3 0 0 0 0.46494 2 34090 34090;34190 38.151 27.968 1 2536200 5089 16144 3413 3491 5958;5959 5958 -0.05870763544999136 DAFHFVSY 8 Unmodified _DAFHFVSY_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2241516113281 2 493.224342 984.434132 0.46437 0.00022904 0.07668 3.782E-05 0.54105 0.00026686 493.22412795015316 61.804 0.28752 61.316 61.16 61.448 -0.48764 37 13 4 0 0 0 0.40035 1 33632 33632 44.407 19.008 1 8661700 5090 16144 3413 3491 5960 5960 -0.05870763544999136 DAFHFVSY 8 Unmodified _DAFHFVSY_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2248229980469 2 493.224342 984.434132 0.64918 0.00032019 -0.059872 -2.953E-05 0.58931 0.00029066 493.2243132380652 68.242 0.4207 62.067 61.784 62.205 -6.1757 33 24 2 0 0 0 0.31612 1 44450 44450 53.576 15.602 1 22068000 5091 16144 3413 3491 5961 5961 -0.05870763544999136 DAFKASVY 8 Unmodified _DAFKASVY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.724853515625 2 450.726718 899.438883 0.3545 0.00015978 -1.1443 -0.00051579 -0.78985 -0.00035601 450.7262497193022 37.484 0.29141 37.484 37.333 37.625 0 33 15 3 0 0 0 0.36898 1 19915 19915 47.749 19.262 1 14878000 5092 6943 3414 3492 5962 5962 -0.014858794022416077 DAFKASVY 8 Unmodified _DAFKASVY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7273559570312 2 450.726718 899.438883 0.83155 0.0003748 -0.48239 -0.00021743 0.34916 0.00015738 450.72647580059936 43.306 0.38963 38.541 38.304 38.693 -4.7648 43 27 2 0 0 0 0.48583 2 26320 26181;26320 36.127 16.688 1 25160000 5093 6943 3414 3492 5963;5964 5964 -0.014858794022416077 DAFKDFVVA 9 Unmodified _DAFKDFVVA_ 0 0 0 nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG nc|ENSG00000049130|P21583-3|KITLG nc|ENSG00000049130|P21583-3|KITLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2611999511719 2 506.260925 1010.5073 0.41151 0.00020833 -0.61579 -0.00031175 -0.20428 -0.00010342 506.26047124989174 61.609 0.73586 61.609 61.215 61.951 0 112 33 6 0 0 0 0.51218 1 34202 34202 6.7232 2.7788 1 185930000 5094 704 3415 3493 5965 5965 0.0024636517761109644 DAFKSGIVQY 10 Unmodified _DAFKSGIVQY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.291015625 2 564.290214 1126.56587 0.62625 0.00035339 0.6169 0.00034811 1.2432 0.0007015 564.2905783409607 47.461 0.47355 47.461 47.171 47.644 0 66 21 5 0 0 0 0.04428 1 25973 25973 61.09 26.688 1 108870000 5095 7176 3416 3494 5966 5966 0.007654217520894235 DAFKSGIVQY 10 Unmodified _DAFKSGIVQY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2904663085938 2 564.290214 1126.56587 0.76738 0.00043303 0.21799 0.00012301 0.98538 0.00055604 564.2903201836818 47.776 0.39171 47.423 47.183 47.575 -0.3526 59 18 5 0 0 0 0.017375 2 25573 25573;25677 78.06 54.04 1 78759000 5096 7176 3416 3494 5967;5968 5967 0.007654217520894235 DAFKSGIVQY 10 Unmodified _DAFKSGIVQY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2916870117188 2 564.290214 1126.56587 1.0051 0.00056715 0.55181 0.00031138 1.5569 0.00087854 564.2907487594027 47.504 0.28148 47.465 47.299 47.581 -0.038643 29 12 3 0 0 0 0.013158 1 25579 25579 81.915 40.076 1 8120400 5097 7176 3416 3494 5969 5969 0.007654217520894235 DAFKSGIVQY 10 Unmodified _DAFKSGIVQY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000507859.1_1_5:96121490-96126328:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2910766601562 2 564.290214 1126.56587 1.237 0.00069804 0.91513 0.0005164 2.1521 0.0012144 564.2906799628272 54.399 0.48184 48.534 48.247 48.729 -5.8653 64 29 3 0 0 0 0.014503 2 34371 34371;34505 80.676 32.927 1 285150000 5098 7176 3416 3494 5970;5971 5970 0.007654217520894235 DAFLAQHTM 9 Oxidation (M) _DAFLAQHTM(Oxidation (M))_ DAFLAQHTM(1) DAFLAQHTM(60) 0 0 1 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF nc|ENSG00000110719|Q13488-2|TCIRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.239501953125 2 525.239667 1048.46478 -0.10514 -5.5224E-05 -2.4144 -0.0012681 -2.5196 -0.0013234 525.2383724751128 31.919 0.20093 31.919 31.739 31.94 0 13 9 2 0 0 0 0.023481 1 16615 16615 60.074 37.338 1 1310500 5099 2736;14933 3417 3495 5972 5972 476 -0.057513532222856156 DAFLASESL 9 Unmodified _DAFLASESL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7347106933594 2 476.73474 951.454927 0.24979 0.00011908 0.013298 6.3396E-06 0.26308 0.00012542 476.73487382417585 63.842 0.4557 63.842 63.567 64.022 0 35 18 3 0 0 0 0.10734 1 35580 35580 32.305 14.171 1 3027700 5100 10143 3418 3496 5973 5973 -0.022742179560054865 DAFLASESL 9 Unmodified _DAFLASESL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4615478515625 1 952.462204 951.454927 -0.25573 -0.00024357 0.96036 0.0009147 0.70463 0.00067113 952.4627116778157 63.814 0.36318 63.814 63.659 64.022 0 32 14 3 0 0 0 0.23158 1 35648 35648 20.454 2.3186 1 2838800 5101 10143 3418 3496 5974 5974 -0.022742179560054865 DAFLASESL 9 Unmodified _DAFLASESL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS AL20221201_MKP_PDAC_01 4 476.7351684570312 2 476.73474 951.454927 NaN NaN NaN NaN NaN NaN NaN 72.6 1 66.425 65.925 66.925 -6.1757 0 0 0 0.18753 1 47495 47495 32.305 9.1571 1 5102 10143 3418 3496 5975 5975 -0.022742179560054865 DAFLEQAVSY 10 Unmodified _DAFLEQAVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7722778320312 2 571.771854 1141.52915 0.49052 0.00028046 0.5605 0.00032048 1.051 0.00060094 571.7720504190627 66.295 0.37656 66.295 66.135 66.512 0 47 16 4 0 0 0 0.17714 2 37054 36956;37054 36.506 19.393 1 7942300 5103 4594 3419 3497 5976;5977 5977 -0.03594874864461417 DAFLEQAVSY 10 Unmodified _DAFLEQAVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7748413085938 2 571.771854 1141.52915 0.4781 0.00027336 1.1989 0.00068552 1.677 0.00095888 571.7724661389103 66.96 0.19223 66.477 66.398 66.59 -0.48323 14 8 2 0 0 0 0.29752 1 36582 36582 27.629 17.555 1 1315200 5104 4594 3419 3497 5978 5978 -0.03594874864461417 DAFLEQAVSY 10 Unmodified _DAFLEQAVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.7982788085938 2 571.771854 1141.52915 0.90591 0.00051798 0.42887 0.00024521 1.3348 0.00076319 571.772081051651 75.408 0.43658 69.233 69.084 69.521 -6.1757 38 23 2 0 0 0 0.19886 1 49349 49349 31.268 19.628 1 16740000 5105 4594 3419 3497 5979 5979 -0.03594874864461417 DAFLNDSY 8 Unmodified _DAFLNDSY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 944.3992919921875 1 944.399603 943.392327 0.33541 0.00031676 0.90481 0.0008545 1.2402 0.0011713 944.4004355565215 51.345 0.24611 51.345 51.208 51.454 0 15 10 2 0 0 0 0.79783 1 28332 28332 7.9102 0.62092 1 1371900 5106 2002;3346 3420 3498 5980 5980 -0.08163364024187558 DAFLTEQY 8 Unmodified _DAFLTEQY_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.4496459960938 1 986.446553 985.439277 0.63388 0.00062529 0.43625 0.00043034 1.0701 0.0010556 986.4476606740477 54.677 0.16542 54.677 54.576 54.741 0 9 6 2 0 0 0 0.63229 1 30346 30346 23.148 9.6405 1 867310 5107 642 3421 3499 5981 5981 -0.054025044730451555 DAFLTEQY 8 Unmodified _DAFLTEQY_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7279357910156 2 493.726915 985.439277 0.79567 0.00039284 1.2165 0.00060061 2.0122 0.00099346 493.7278602310665 54.675 0.23592 54.675 54.505 54.741 0 20 9 3 0 0 0 0.61462 1 30351 30351 24.674 3.8027 1 2174700 5108 642 3421 3499 5982 5982 -0.054025044730451555 DAFPLLSAY 9 Unmodified _DAFPLLSAY_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.5025634765625 1 996.503674 995.496398 -0.047027 -4.6863E-05 -0.5959 -0.00059382 -0.64293 -0.00064068 996.5028232765953 90.232 0.50224 90.232 89.967 90.47 0 71 33 3 0 0 0 0.03568 1 49918 49918 52.268 29.12 1 1858600 5109 1386 3422 3500 5983 5983 -0.0015303719667372206 DAFPLLSAY 9 Unmodified _DAFPLLSAY_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.502197265625 1 996.503674 995.496398 0.33175 0.00033059 -1.1562 -0.0011522 -0.82445 -0.00082157 996.5026753047873 90.781 0.60512 90.286 90.006 90.611 -0.49457 95 38 3 0 0 0 0.011968 3 49616 49513;49616;49716 74.929 30.522 1 5814800 5110 1386 3422 3500 5984;5985;5986 5985 -0.0015303719667372206 DAFPLLSAY 9 Unmodified _DAFPLLSAY_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7552795410156 2 498.755475 995.496398 0.31487 0.00015704 -1.0954 -0.00054636 -0.78058 -0.00038932 498.754970427337 90.822 0.80578 90.327 89.974 90.78 -0.49457 106 47 3 0 0 0 0.10734 3 49617 49514;49617;49728 32.305 9.9414 1 5751700 5111 1386 3422 3500 5987;5988;5989 5988 -0.0015303719667372206 DAFPLLSAY 9 Unmodified _DAFPLLSAY_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7557067871094 2 498.755475 995.496398 0.25234 0.00012586 -1.0974 -0.00054732 -0.84502 -0.00042146 498.75537221136386 98.818 0.4122 92.643 92.465 92.878 -6.1757 44 29 2 0 0 0 0.07916 2 65517 65517;65694 37.974 13.3 1 62914000 5112 1386 3422 3500 5990;5991 5990 -0.0015303719667372206 DAFPLLSAY 9 Unmodified _DAFPLLSAY_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 996.5045776367188 1 996.503674 995.496398 -0.028183 -2.8085E-05 -0.019975 -1.9905E-05 -0.048158 -4.799E-05 996.5040370983561 98.811 0.35869 92.635 92.465 92.824 -6.1757 44 26 2 0 0 0 0.0071894 3 65704 65525;65704;65793 111.29 50.397 1 66330000 5113 1386 3422 3500 5992;5993;5994 5993 -0.0015303719667372206 DAFRQIKAY 9 Unmodified _DAFRQIKAY_ 0 0 0 nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2987060546875 2 556.298373 1110.58219 -0.24263 -0.00013497 0.38307 0.0002131 0.14044 7.8126E-05 556.2987483353149 35.859 0.20437 35.637 35.546 35.751 -0.2224 11 8 2 0 0 0 0.085319 1 18828 18828 36.506 22.6 1 2040600 5114 5550 3423 3501 5995 5995 0.03132547708855782 DAFRSWAV 8 Unmodified _DAFRSWAV_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2361450195312 2 476.237784 950.461016 -0.85147 -0.0004055 -0.14828 -7.0616E-05 -0.99975 -0.00047612 476.2376874123918 56.326 0.15564 55.84 55.767 55.923 -0.48554 14 7 2 0 0 0 0.38756 1 30574 30574 45.7 5.7423 1 2846200 5115 357 3424 3502 5996 5996 -0.01619654933813308 DAFWNSSKY 9 Unmodified _DAFWNSSKY_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.250732421875 2 559.251089 1116.48762 -0.3542 -0.00019809 0.37177 0.00020791 0.017573 9.8275E-06 559.2508336372531 48.659 0.26967 48.659 48.491 48.761 0 28 12 3 0 0 0 0.085319 1 26740 26740 36.506 13.358 1 2495300 5116 6601;5087 3425 3503 5997 5997 -0.06596010833118271 DAFWNSSKY 9 Unmodified _DAFWNSSKY_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2518920898438 2 559.251089 1116.48762 0.59466 0.00033257 0.49667 0.00027777 1.0913 0.00061033 559.2512378007722 49.062 0.26013 48.691 48.539 48.799 -0.37172 27 12 3 0 0 0 0.023481 1 26352 26352 60.074 45.236 1 5037700 5117 6601;5087 3425 3503 5998 5998 -0.06596010833118271 DAFWNSSKY 9 Unmodified _DAFWNSSKY_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000138678|ENST00000264409|GPAT3;ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.7798461914062 2 559.251089 1116.48762 1.1936 0.00066751 0.20752 0.00011606 1.4011 0.00078357 559.2511713411164 55.006 0.34907 49.085 48.858 49.207 -5.9211 34 21 2 0 0 0 0.20139 1 34907 34907 10.824 2.6684 1 25285000 5118 6601;5087 3425 3503 5999 5999 -0.06596010833118271 DAGAALLVE 9 Unmodified _DAGAALLVE_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.459228515625 1 858.456724 857.449448 0.078829 6.7671E-05 4.1554 0.0035673 4.2343 0.0036349 858.4606198563371 80.091 0.2439 80.091 79.936 80.18 0 18 14 2 0 0 0 0.5029 1 44461 44461 7.2892 0.56607 1 863720 + 5119 20848 3426 3504 6000 6000 0.015021032522099631 DAGEFVDLY 9 Unmodified _DAGEFVDLY_ 0 0 0 ENSG00000171858|ENST00000343986|RPS21 ENSG00000171858|ENST00000343986|RPS21 ENSG00000171858|ENST00000343986|RPS21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.731201171875 2 514.732197 1027.44984 0.09477 4.8781E-05 -0.78956 -0.00040641 -0.69479 -0.00035763 514.73173266448 70.137 0.21036 70.137 70.098 70.308 0 14 10 2 0 0 0 0.14602 1 39086 39086 28.487 12.64 1 904680 5120 8152 3427 3505 6001 6001 -0.06278521818603622 DAGFCDAEYF 10 Unmodified _DAGFCDAEYF_ 0 0 0 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.213134765625 2 569.213314 1136.41208 0.35843 0.00020403 -0.77341 -0.00044024 -0.41498 -0.00023621 569.2124517519968 58.899 0.27728 58.899 58.768 59.045 0 23 12 2 0 0 0 0.60623 1 32768 32768 10.824 0.75 1 1109900 + 5121 22601 3428 3506 6002 6002 -0.1506735607574683 DAGKLAQAVL 10 Unmodified _DAGKLAQAVL_ 0 0 0 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7610778808594 2 493.287474 984.560395 -0.4134 -0.00020392 0.39141 0.00019308 -0.021985 -1.0845E-05 493.2876761404898 48.503 0.24487 48.503 48.373 48.618 0 27 11 3 0 0 0 0.18565 1 26571 26571 34.932 8.6639 1 3541700 5122 8098 3429 3507 6003 6003 0.06749742960278127 DAGPPTHAF 9 Unmodified _DAGPPTHAF_ 0 0 0 ENSG00000139946|ENST00000267460|PELI2;ENSG00000197329|ENST00000358912|PELI1 ENSG00000139946|ENST00000267460|PELI2;ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7142944335938 2 456.714142 911.413731 -0.47919 -0.00021885 0.71307 0.00032567 0.23388 0.00010682 456.71442174882986 32.151 0.45468 32.151 31.9 32.355 0 70 22 4 0 0 0 0.026094 2 16779 16682;16779 57.471 32.072 1 38020000 5123 5199;9942 3430 3508 6004;6005 6005 -0.04551934204812369 DAGPPTHAF 9 Unmodified _DAGPPTHAF_ 0 0 0 ENSG00000139946|ENST00000267460|PELI2;ENSG00000197329|ENST00000358912|PELI1 ENSG00000139946|ENST00000267460|PELI2;ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7146301269531 2 456.714142 911.413731 0.90216 0.00041203 0.15116 6.9039E-05 1.0533 0.00048107 456.7141361271517 36.76 0.6228 32.476 32.188 32.81 -4.2835 88 38 3 0 0 0 0.016184 3 21363 21363;21488;21616 67.344 44.195 1 77244000 5124 5199;9942 3430 3508 6006;6007;6008 6006 -0.04551934204812369 DAGQFYAKY 9 Unmodified _DAGQFYAKY_ 0 0 0 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7492065429688 2 531.748182 1061.48181 0.71318 0.00037923 1.3388 0.0007119 2.052 0.0010911 531.7490962540322 38.812 0.54142 38.812 38.535 39.077 0 29 15 2 0 0 0 0.039985 1 20765 20765 49.933 28.186 1 11536000 5125 4853 3431 3509 6009 6009 -0.046471093448190004 DAGQFYAKY 9 Unmodified _DAGQFYAKY_ 0 0 0 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 MSMS AL20221201_MKP_PDAC_01 4 531.7484130859375 2 531.748182 1061.48181 NaN NaN NaN NaN NaN NaN NaN 44.281 1 39.429 38.929 39.929 -4.852 0 0 0 0.25233 1 27012 27012 27.629 13.723 1 5126 4853 3431 3509 6010 6010 -0.046471093448190004 DAGRFDVSF 9 Unmodified _DAGRFDVSF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2362976074219 2 507.237981 1012.46141 0.57446 0.00029139 -0.69429 -0.00035217 -0.11983 -6.0781E-05 507.2374826162442 56.948 0.36924 56.948 56.786 57.156 0 38 15 3 0 0 0 0.044296 2 31656 31656;31762 47.594 9.6373 1 8663000 5127 907 3432 3510 6011;6012 6011 -0.044322800046188604 DAGRFDVSF 9 Unmodified _DAGRFDVSF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2376403808594 2 507.237981 1012.46141 NaN NaN NaN NaN NaN NaN NaN 57.555 1 57.066 56.566 57.566 -0.48974 0 0 0 0.054801 1 31280 31280 55.503 17.529 1 5128 907 3432 3510 6013 6013 -0.044322800046188604 DAGRFDVSF 9 Unmodified _DAGRFDVSF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2361755371094 2 507.237981 1012.46141 1.3565 0.00068808 -0.67255 -0.00034114 0.68398 0.00034694 507.2375230775935 64.142 0.36777 57.966 57.765 58.132 -6.1757 30 18 2 0 0 0 0.029718 2 41609 41473;41609 55.503 19.376 1 19640000 5129 907 3432 3510 6014;6015 6015 -0.044322800046188604 DAGVQQVTAL 10 Unmodified _DAGVQQVTAL_ 0 0 0 REV__ENSG00000050555|ENST00000361069|LAMC3 REV__ENSG00000050555|ENST00000361069|LAMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2675476074219 2 501.266739 1000.51892 NaN NaN NaN NaN NaN NaN NaN 70.032 1 70.032 69.532 70.532 0 0 0 0 0.71851 1 39017 39017 15.847 2.8047 1 + 5130 17261 3433 3511 6016 6016 0.01868562200957058 DAHALLLLY 9 Unmodified _DAHALLLLY_ 0 0 0 nc|ENSG00000167964|Q9ULW5-2|RAB26;ENST00000562735.5_1_16:2198751-2203097:+|nuORF;ENSG00000167964|ENST00000210187|RAB26 nc|ENSG00000167964|Q9ULW5-2|RAB26 nc|ENSG00000167964|Q9ULW5-2|RAB26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7913818359375 2 514.792392 1027.57023 0.056051 2.8854E-05 0.19462 0.00010019 0.25067 0.00012904 514.79223923176 78.807 0.22913 78.321 78.165 78.394 -0.48595 14 8 2 0 0 0 0.41742 1 43155 43155 11.64 0 1 710980 5131 7686 3434 3512 6017 6017 0.05754930965690619 DAHALLLLY 9 Unmodified _DAHALLLLY_ 0 0 0 nc|ENSG00000167964|Q9ULW5-2|RAB26;ENST00000562735.5_1_16:2198751-2203097:+|nuORF;ENSG00000167964|ENST00000210187|RAB26 nc|ENSG00000167964|Q9ULW5-2|RAB26 nc|ENSG00000167964|Q9ULW5-2|RAB26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7930908203125 2 514.792392 1027.57023 0.55176 0.00028404 0.44577 0.00022948 0.99753 0.00051352 514.7927527383622 82.387 0.26118 81.892 81.794 82.055 -0.4952 17 10 2 0 0 0 0.34999 1 45109 45109 14.838 7.549 1 679740 5132 7686 3434 3512 6018 6018 0.05754930965690619 DAHELWHAM 9 Oxidation (M) _DAHELWHAM(Oxidation (M))_ DAHELWHAM(1) DAHELWHAM(50) 0 0 1 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.165283203125 3 375.830919 1124.47093 -0.65615 -0.0002466 0.54629 0.00020531 -0.10986 -4.1289E-05 375.8312444318419 31.968 0.26388 31.968 31.82 32.084 0 37 12 4 0 0 0 0.039985 1 16643 16643 49.933 43.741 1 7362200 5133 2654 3435 3513 6019 6019 459 -0.08632834990748961 DAHELWHAM 9 Oxidation (M) _DAHELWHAM(Oxidation (M))_ DAHELWHAM(1) DAHELWHAM(85) 0 0 1 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.24365234375 2 563.242741 1124.47093 -0.3917 -0.00022062 -1.1269 -0.00063471 -1.5186 -0.00085533 563.2433177703398 31.965 0.32663 31.965 31.778 32.105 0 27 15 3 0 0 0 0.0090851 1 16657 16657 85.357 67.21 1 2160000 5134 2654 3435 3513 6020 6020 459 -0.08632834990748961 DAHELWHAM 9 Oxidation (M) _DAHELWHAM(Oxidation (M))_ DAHELWHAM(1) DAHELWHAM(71) 0 0 1 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2420654296875 2 563.242741 1124.47093 1.6083 0.00090589 -1.2339 -0.00069499 0.37444 0.0002109 563.2416538749471 35.873 0.15734 31.68 31.613 31.77 -4.1928 14 9 2 0 0 0 0.013323 1 20903 20903 71.134 58.893 1 4440100 5135 2654 3435 3513 6021 6021 459 -0.08632834990748961 DAHELWHAM 9 Unmodified _DAHELWHAM_ 0 0 0 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.4996032714844 3 370.499281 1108.47601 1.6378 0.0006068 -0.66437 -0.00024615 0.97342 0.00036065 370.49902236677286 50.806 0.4302 45.157 44.907 45.337 -5.649 66 25 3 0 0 0 0.03327 1 31875 31875 56.177 48.568 1 68127000 5136 2654 3435 3514 6022 6022 -0.07388531128117393 DAHGSFCF 8 Carbamidomethyl (C) _DAHGSFC(Carbamidomethyl (C))F_ DAHGSFC(1)F DAHGSFC(57)F 0 1 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.6842956542969 2 470.684527 939.354502 0.27022 0.00012719 -0.83679 -0.00039387 -0.56657 -0.00026668 470.68430665267397 47.013 0.38972 47.013 46.781 47.171 0 53 18 4 0 0 0 0.28922 2 25763 25647;25763 56.541 28.054 1 29314000 5137 2113 3436 3515 6023;6024 6024 213 -0.11760153490638459 DAHGSFCF 8 Carbamidomethyl (C) _DAHGSFC(Carbamidomethyl (C))F_ DAHGSFC(1)F DAHGSFC(67)F 0 1 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.6849975585938 2 470.684527 939.354502 0.88242 0.00041534 0.1903 8.9574E-05 1.0727 0.00050491 470.6846355718656 52.65 0.44751 46.915 46.707 47.155 -5.7345 46 24 2 0 0 0 0.21786 2 33163 33163;33278 67.035 30.991 1 61996000 5138 2113 3436 3515 6025;6026 6025 213 -0.11760153490638459 DAHGSFCF 8 Carbamidomethyl (C) _DAHGSFC(Carbamidomethyl (C))F_ 0 1 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.684527 939.354502 0.70009 0.00032952 -0.16107 -7.5811E-05 0.53902 0.00025371 470.68451746132297 47.3 0.18192 46.948 46.838 47.02 -0.3526 -0.011138 0.00015753 NaN 67.035 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1688500 5139 2113 3436 3515 213 -0.11760153490638459 DAHGVVIVF 9 Unmodified _DAHGVVIVF_ 0 0 0 ENSG00000128581|ENST00000315322|IFT22;ENST00000468833.1_1_7:100959585-100959801:-|nuORF;nc|ENSG00000128581|Q9H7X7-3|IFT22;nc|ENSG00000128581|Q9H7X7-2|IFT22 ENSG00000128581|ENST00000315322|IFT22 ENSG00000128581|ENST00000315322|IFT22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2662353515625 2 478.763635 955.512717 0.22358 0.00010704 0.34824 0.00016672 0.57182 0.00027377 478.7635596877944 69.781 0.43967 69.781 69.534 69.974 0 73 23 5 0 0 0 0.16226 2 38784 38784;38880 26.884 9.9414 1 29804000 5140 4071 3437 3516 6027;6028 6027 0.03318088760090632 DAHGVVIVF 9 Unmodified _DAHGVVIVF_ 0 0 0 ENSG00000128581|ENST00000315322|IFT22;ENST00000468833.1_1_7:100959585-100959801:-|nuORF;nc|ENSG00000128581|Q9H7X7-3|IFT22;nc|ENSG00000128581|Q9H7X7-2|IFT22 ENSG00000128581|ENST00000315322|IFT22 ENSG00000128581|ENST00000315322|IFT22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7633056640625 2 478.763635 955.512717 0.19543 9.3562E-05 -0.016037 -7.6781E-06 0.17939 8.5884E-05 478.76354363553776 70.201 0.41926 69.722 69.515 69.934 -0.47903 72 22 4 0 0 0 0.042911 2 38318 38318;38418 48.346 19.859 1 32301000 5141 4071 3437 3516 6029;6030 6029 0.03318088760090632 DAHGVVIVF 9 Unmodified _DAHGVVIVF_ 0 0 0 ENSG00000128581|ENST00000315322|IFT22;ENST00000468833.1_1_7:100959585-100959801:-|nuORF;nc|ENSG00000128581|Q9H7X7-3|IFT22;nc|ENSG00000128581|Q9H7X7-2|IFT22 ENSG00000128581|ENST00000315322|IFT22 ENSG00000128581|ENST00000315322|IFT22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7645874023438 2 478.763635 955.512717 1.0365 0.00049622 0.2137 0.00010231 1.2502 0.00059853 478.76357739173454 74.215 0.58038 68.04 67.747 68.328 -6.1757 68 29 3 0 0 0 0.042911 3 48402 48402;48520;48632 48.346 12.302 1 34311000 5142 4071 3437 3516 6031;6032;6033 6031 0.03318088760090632 DAHKGVAL 8 Unmodified _DAHKGVAL_ 0 0 0 nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.7276000976562 2 405.727052 809.439552 1.0228 0.00041499 0.90595 0.00036757 1.9288 0.00078256 405.72733710355186 22.028 0.27212 19.294 19.14 19.412 -2.7348 27 15 2 0 0 0 0.29252 1 11827 11827 56.177 23.872 1 1461400 5143 569 3438 3517 6034 6034 0.02720960037470377 DAHMLDTQY 9 Oxidation (M) _DAHM(Oxidation (M))LDTQY_ DAHM(1)LDTQY DAHM(82)LDTQY 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2322387695312 2 555.232039 1108.44952 -0.2912 -0.00016168 0.35315 0.00019608 0.06195 3.4396E-05 555.2323398742087 27.622 0.31354 27.622 27.427 27.741 0 55 14 5 0 0 0 0.0095811 2 14276 14178;14276 81.613 54.729 1 46689000 5144 16188 3439 3518 6035;6036 6036 1803 -0.10036264810105422 DAHMLDTQY 9 Oxidation (M) _DAHM(Oxidation (M))LDTQY_ DAHM(1)LDTQY DAHM(44)LDTQY 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2319946289062 2 555.232039 1108.44952 -0.32907 -0.00018271 -0.23818 -0.00013224 -0.56725 -0.00031496 555.2320765572466 27.912 0.3067 27.912 27.741 28.048 0 55 16 5 0 0 0 0.05447 1 14376 14376 43.858 20.71 1 40295000 5145 16188 3439 3518 6037 6037 1803 -0.10036264810105422 DAHMLDTQY 9 Oxidation (M) _DAHM(Oxidation (M))LDTQY_ DAHM(1)LDTQY DAHM(78)LDTQY 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2327270507812 2 555.232039 1108.44952 0.6718 0.00037301 0.19431 0.00010789 0.86611 0.00048089 555.2322322337392 31.769 0.36043 28.073 27.886 28.246 -3.6958 52 19 3 0 0 0 0.010818 2 18086 17959;18086 78.149 55.001 1 126880000 5146 16188 3439 3518 6038;6039 6039 1803 -0.10036264810105422 DAHMLDTQY 9 Oxidation (M) _DAHM(Oxidation (M))LDTQY_ DAHM(1)LDTQY DAHM(61)LDTQY 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.232666015625 2 555.232039 1108.44952 1.0296 0.00057166 -0.57786 -0.00032085 0.45173 0.00025081 555.2319057180257 32.145 0.42985 28.449 28.246 28.676 -3.6958 66 24 3 0 0 0 0.022193 2 18344 18214;18344 61.357 43.43 1 86700000 5147 16188 3439 3518 6040;6041 6041 1803 -0.10036264810105422 DAHMLDTQY 9 Unmodified _DAHMLDTQY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2343139648438 2 547.234581 1092.45461 0.24177 0.0001323 -1.7188 -0.00094061 -1.4771 -0.0008083 547.2338621517334 37.477 0.25471 37.477 37.35 37.604 0 38 13 4 0 0 0 0.18144 1 19933 19933 34.102 23.279 1 8965900 5148 16188 3439 3519 6042 6042 -0.08791960947496591 DAHMLDTQY 9 Unmodified _DAHMLDTQY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2330322265625 2 547.234581 1092.45461 0.5975 0.00032697 0.057776 3.1617E-05 0.65527 0.00035859 547.2347498096665 43.673 0.55851 38.908 38.595 39.153 -4.7648 130 35 5 0 0 0 0.015688 2 26379 26379;26503 74.929 44.292 1 280650000 5149 16188 3439 3519 6043;6044 6043 -0.08791960947496591 DAHPTLVTY 9 Unmodified _DAHPTLVTY_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENSG00000165819|ENST00000298717|METTL3;ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7559204101562 2 508.756007 1015.49746 -0.088002 -4.4772E-05 -0.14907 -7.5839E-05 -0.23707 -0.00012061 508.75605888482704 41.671 0.44135 41.671 41.404 41.846 0 63 22 4 0 0 0 0.012148 2 22560 22435;22560 74.423 38.379 1 150280000 5150 7395;12798 3440 3520 6045;6046 6046 -0.009668228277405433 DAHPTLVTY 9 Unmodified _DAHPTLVTY_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;ENST00000536201.5_1_14:21969853-21979446:-|nuORF;ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENSG00000165819|ENST00000298717|METTL3;ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7562561035156 2 508.756007 1015.49746 1.4531 0.00073925 -0.049964 -2.542E-05 1.4031 0.00071383 508.7558985424669 47.687 0.64337 42.453 42.165 42.808 -5.2339 119 38 4 0 0 0 0.016184 3 29506 29506;29638;29789 67.344 37.241 1 230410000 5151 7395;12798 3440 3520 6047;6048;6049 6047 -0.009668228277405433 DAHQCTKLY 9 Unmodified _DAHQCTKLY_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7552490234375 2 539.752941 1077.49133 0.22445 0.00012115 1.0305 0.00055619 1.2549 0.00067734 539.7561707166471 42.148 0.48093 42.148 41.901 42.382 0 36 24 3 0 0 0 0.25681 1 22828 22828 19.257 1.1106 1 11737000 5152 8124 3441 3521 6050 6050 -0.04431664330923013 DAHRSIEKF 9 Unmodified _DAHRSIEKF_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1927795410156 3 368.192845 1101.55671 -0.47269 -0.00017404 0.47753 0.00017582 0.0048477 1.7849E-06 368.1929834895242 19.572 0.16422 19.572 19.491 19.655 0 46 26 2 0 0 0 0.55144 1 9765 9765 2.4985 0.84587 1 1599000 5153 1761 3442 3522 6051 6051 0.00999073186426358 DAIEALTAY 9 Unmodified _DAIEALTAY_ 0 0 0 ENSG00000105072|ENST00000221671|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7432250976562 2 483.742565 965.470577 0.20196 9.7695E-05 -0.65075 -0.0003148 -0.44879 -0.0002171 483.7423167265619 64.907 0.26726 64.907 64.765 65.033 0 27 12 3 0 0 0 0.2143 1 36162 36162 21.747 8.2388 1 2400200 5154 2274 3443 3523 6052 6052 -0.013539314389618085 DAIEELVKY 9 Unmodified _DAIEELVKY_ 0 0 0 nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11 nc|ENSG00000020922|P49959-2|MRE11 nc|ENSG00000020922|P49959-2|MRE11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2841796875 2 540.284597 1078.55464 NaN NaN NaN NaN NaN NaN NaN 62.284 1 62.284 61.784 62.784 0 0 0 0 0.030047 1 34735 34735 66.457 37.375 1 5155 522 3444 3524 6053 6053 0.01850599657973362 DAIISVLAY 9 Unmodified _DAIISVLAY_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7715148925781 2 482.771126 963.527698 0.27419 0.00013237 1.2306 0.00059409 1.5048 0.00072646 482.771662606983 85.587 0.40517 85.587 85.363 85.768 0 30 16 3 0 0 0 0.39863 2 47470 47377;47470 12.532 4.6214 1 604900 5156 9893 3445 3525 6054;6055 6055 0.04447535837425676 DAILATLM 8 Oxidation (M) _DAILATLM(Oxidation (M))_ DAILATLM(1) DAILATLM(60) 0 0 1 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.2310791015625 2 432.230779 862.447005 0.076837 3.3211E-05 -0.05492 -2.3738E-05 0.021916 9.4729E-06 432.23076664314254 62.037 0.47081 62.037 61.775 62.245 0 43 21 3 0 0 0 0.26159 1 34593 34593 60.39 10.721 1 4764100 5157 1804 3446 3526 6056 6056 302 0.010279315229013264 DAILATLM 8 Oxidation (M) _DAILATLM(Oxidation (M))_ DAILATLM(1) DAILATLM(89) 0 0 1 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 863.4533081054688 1 863.454281 862.447005 0.017844 1.5408E-05 -0.54143 -0.0004675 -0.52359 -0.00045209 863.4538174090818 62.029 0.36745 62.029 61.821 62.189 0 31 15 3 0 0 0 0.13832 1 34624 34624 89.427 10.982 1 3024700 5158 1804 3446 3526 6057 6057 302 0.010279315229013264 DAIPAVEVF 9 Unmodified _DAIPAVEVF_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7551574707031 2 480.755475 959.496398 0.26635 0.00012805 0.97689 0.00046965 1.2432 0.0005977 480.7557890634006 79.506 0.33595 79.506 79.35 79.686 0 31 13 3 0 0 0 0.30562 2 44136 44136;44229 16.942 9.0321 1 1317900 5159 3946 3447 3527 6058;6059 6058 0.015029628033289555 DAIPAVEVF 9 Unmodified _DAIPAVEVF_ 0 0 0 nc|ENSG00000126432|P30044-2|PRDX5;nc|ENSG00000126432|P30044-3|PRDX5;ENSG00000126432|ENST00000265462|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 nc|ENSG00000126432|P30044-2|PRDX5 MSMS AL20221201_MKP_PDAC_01 4 480.7568359375 2 480.755475 959.496398 NaN NaN NaN NaN NaN NaN NaN 88.349 1 82.174 81.674 82.674 -6.1757 0 0 0 0.18753 1 58283 58283 32.305 10.559 1 5160 3946 3447 3527 6060 6060 0.015029628033289555 DAIRLAVSY 9 Unmodified _DAIRLAVSY_ 0 0 0 ENST00000486403.1_1_2:114398907-114399703:+|nuORF;ENST00000494909.5_1_2:114398907-114399703:+|nuORF;ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000450954.5_1_2:114386257-114399703:+|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;nc|ENSG00000144134|Q9UBK7|RABL2A;ENSG00000144134|ENST00000683472|RABL2A;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B;nc|ENSG00000144134|Q9UBK7-3|RABL2A ENST00000486403.1_1_2:114398907-114399703:+|nuORF ENST00000486403.1_1_2:114398907-114399703:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2717895507812 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 55.898 1 55.829 55.329 56.329 -0.068737 0 0 0 0.18978 1 30387 30387 32.037 11.584 1 5161 1288 3448 3528 6061 6061 0.041734564432204024 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2821044921875 2 520.282192 1038.54983 0.38668 0.00020118 -0.1324 -6.8888E-05 0.25427 0.00013229 520.281992229495 71.183 0.61351 70.706 70.483 71.097 -0.47736 67 26 4 0 0 0 0.025842 1 38989 38989 57.722 41.875 1 28571000 5162 1117 3449 3529 6062 6062 0.03209760305844611 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2815551757812 2 520.282192 1038.54983 0.90814 0.00047249 0.81843 0.00042581 1.7266 0.0008983 520.2821184824543 70.672 0.81228 70.707 70.463 71.275 0.035515 99 36 5 0 0 0 0.01958 2 38836 38836;38943 63.961 42.214 1 26242000 5163 1117 3449 3529 6063;6064 6063 0.03209760305844611 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2817993164062 2 520.282192 1038.54983 0.8734 0.00045441 -0.63925 -0.00033259 0.23415 0.00012182 520.2817430804106 78.035 0.35108 71.859 71.584 71.935 -6.1757 27 19 2 0 0 0 0.040683 1 51033 51033 49.554 21.067 1 12225000 5164 1117 3449 3529 6065 6065 0.03209760305844611 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2801513671875 2 520.282192 1038.54983 0.31817 0.00016554 -0.22104 -0.000115 0.097134 5.0537E-05 520.2818168994672 78.466 0.34419 72.29 72.171 72.515 -6.1757 25 21 2 0 0 0 0.062454 2 51322 51322;51472 41.956 20.8 1 14998000 5165 1117 3449 3529 6066;6067 6066 0.03209760305844611 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.283203125 2 520.282192 1038.54983 1.2406 0.00064547 1.8671 0.0009714 3.1077 0.0016169 520.2829385272713 79.179 0.83884 73.003 72.596 73.435 -6.1757 74 47 2 0 0 0 0.062454 2 51808 51685;51808 41.956 19.085 1 21454000 5166 1117 3449 3529 6068;6069 6069 0.03209760305844611 DAIRLFAAY 9 Unmodified _DAIRLFAAY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2826538085938 2 520.282192 1038.54983 1.3485 0.00070162 -1.2851 -0.00066862 0.063415 3.2994E-05 520.2817547936058 79.72 0.24227 73.545 73.435 73.677 -6.1757 27 14 3 0 0 0 0.062454 1 52244 52244 41.956 20.209 1 12423000 5167 1117 3449 3529 6070 6070 0.03209760305844611 DAIRNLHHY 9 Unmodified _DAIRNLHHY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1964416503906 3 380.19659 1137.56794 -0.44683 -0.00016988 0.11362 4.3198E-05 -0.33322 -0.00012669 380.19661219314554 20.595 0.2836 20.595 20.473 20.757 0 61 21 5 0 0 0 0.076472 1 10346 10346 38.615 27.097 1 39268000 5168 8379;16392 3450 3530 6071 6071 0.004658952805812078 DAIRNLHHY 9 Unmodified _DAIRNLHHY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.196533203125 3 380.19659 1137.56794 -0.36878 -0.00014021 0.41107 0.00015629 0.04229 1.6079E-05 380.19675862704537 20.426 0.2324 20.454 20.329 20.561 0.028355 29 12 4 0 0 0 0.053952 1 10325 10325 43.982 33.083 1 5999600 5169 8379;16392 3450 3530 6072 6072 0.004658952805812078 DAIRNLHHY 9 Unmodified _DAIRNLHHY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.19677734375 3 380.19659 1137.56794 0.10662 4.0537E-05 -0.094595 -3.5965E-05 0.012026 4.5722E-06 380.19653998497023 20.455 0.18703 20.465 20.37 20.557 0.010551 22 9 3 0 0 0 0.14594 1 10424 10424 28.495 20.549 1 2581700 5170 8379;16392 3450 3530 6073 6073 0.004658952805812078 DAIRNLHHY 9 Unmodified _DAIRNLHHY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MSMS AL20221201_MKP_PDAC_01 4 569.7913818359375 2 569.791247 1137.56794 NaN NaN NaN NaN NaN NaN NaN 22.911 1 20.132 19.632 20.632 -2.7784 0 0 0 0.10415 1 12361 12361 45.7 29.852 1 5171 8379;16392 3450 3530 6074 6074 0.004658952805812078 DAIRRISTE 9 Unmodified _DAIRRISTE_ 0 0 0 REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7941284179688 2 530.790912 1059.56727 -0.14132 -7.5014E-05 -0.37964 -0.00020151 -0.52097 -0.00027652 530.7909007884057 78.623 0.24834 78.137 77.99 78.238 -0.48595 15 9 2 0 0 0 0.49272 1 43084 43084 7.9102 0 1 427590 + 5172 19924 3451 3531 6075 6075 0.0398705584086656 DAIRSLASVSY 11 Unmodified _DAIRSLASVSY_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2689819335938 2 591.311677 1180.6088 0.49924 0.00029521 -0.58625 -0.00034666 -0.087009 -5.145E-05 591.3115554983053 53.704 0.31253 53.253 53.109 53.421 -0.45173 42 15 4 0 0 0 0.29044 1 29024 29024 19.626 7.9857 1 14292000 5173 2506 3452 3532 6076 6076 0.025721918095314322 DAIRSLASVSY 11 Unmodified _DAIRSLASVSY_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3123779296875 2 591.311677 1180.6088 1.0093 0.00059683 -0.12695 -7.5067E-05 0.88239 0.00052177 591.3116116430805 60.863 0.42284 54.716 54.495 54.918 -6.1478 43 22 2 0 0 0 0.00061588 2 39117 39117;39238 93.448 53.499 1 43627000 5174 2506 3452 3532 6077;6078 6077 0.025721918095314322 DAIRSLASVSY 11 Unmodified _DAIRSLASVSY_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 591.311677 1180.6088 0.31988 0.00018915 -0.081054 -4.7928E-05 0.23882 0.00014122 591.311775844646 53.13 0.18193 53.13 53.039 53.221 0 -0.061445 0.00050645 NaN 19.626 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1594100 5175 2506 3452 3532 0.025721918095314322 DAISKTYSY 9 Unmodified _DAISKTYSY_ 0 0 0 ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2539672851562 2 524.253297 1046.49204 0.33923 0.00017784 -0.26294 -0.00013785 0.076287 3.9994E-05 524.2531202737349 31.581 0.32108 31.581 31.418 31.739 0 50 15 4 0 0 0 0.010301 2 16408 16408;16508 79.596 54.197 1 35324000 5176 5291 3453 3533 6079;6080 6079 -0.029345464102334518 DAISKTYSY 9 Unmodified _DAISKTYSY_ 0 0 0 ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.2534790039062 2 524.253297 1046.49204 NaN NaN NaN NaN NaN NaN NaN 36.573 1 32.29 31.79 32.79 -4.2835 0 0 0 0.049786 1 21370 21370 57.722 34.986 1 5177 5291 3453 3533 6081 6081 -0.029345464102334518 DAISKTYSY 9 Unmodified _DAISKTYSY_ 0 0 0 ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000529806.5_1_16:2012098-2012518:-|nuORF;ENST00000475555.1_1_4:144270430-144270667:-|nuORF;ENST00000441047.1_1_17:51834352-51834658:-|nuORF;ENST00000443417.1_1_9:102879039-102879699:-|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.253297 1046.49204 -0.26952 -0.00014129 -0.34617 -0.00018148 -0.61568 -0.00032277 524.2539009520551 31.447 0.089695 31.477 31.432 31.522 0.030104 -0.052198 -8.3895E-05 NaN 79.596 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1081400 5178 5291 3453 3533 -0.029345464102334518 DAITEAGKTY 10 Unmodified _DAITEAGKTY_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2315063476562 2 534.764029 1067.5135 0.94411 0.00050488 0.712 0.00038075 1.6561 0.00088563 534.7645351884429 34.281 0.22643 30.296 30.133 30.359 -3.9853 18 12 2 0 0 0 0.010233 1 19757 19757 87.258 56.622 1 8298900 5179 4205 3454 3534 6082 6082 -0.017551613814930533 DAIWSMERE 9 Unmodified _DAIWSMERE_ 0 0 0 REV__nc|ENSG00000148672|P00367-2|GLUD1 REV__nc|ENSG00000148672|P00367-2|GLUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.756591796875 2 568.755681 1135.49681 0.69835 0.00039719 0.029813 1.6956E-05 0.72817 0.00041415 568.7558751897645 57.315 0.33302 57.315 57.177 57.51 0 45 14 4 0 0 0 0.34999 1 31961 31961 14.838 0.93222 1 15292000 + 5180 20961 3455 3535 6083 6083 -0.06551985539113048 DAKPELLAF 9 Unmodified _DAKPELLAF_ 0 0 0 ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2770690917969 2 502.276575 1002.5386 0.55494 0.00027873 0.45513 0.0002286 1.0101 0.00050734 502.2768408135838 68.715 0.3768 68.715 68.487 68.864 0 36 16 3 0 0 0 0.30202 1 38346 38346 17.113 6.289 1 2416000 5181 8484 3456 3536 6084 6084 0.03742938211712499 DAKQIHKQPRK 11 Unmodified _DAKQIHKQPRK_ 0 0 0 REV__ENSG00000113555|ENST00000231484|PCDH12 REV__ENSG00000113555|ENST00000231484|PCDH12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7613220214844 3 450.265115 1347.77352 0.57736 0.00025997 4.285 0.0019294 4.8624 0.0021894 450.2674402605824 28.443 0.092335 28.472 28.401 28.494 0.029564 5 3 2 0 0 0 0.29974 1 14792 14792 5.8681 3.2369 1 973140 + 5182 18874 3457 3537 6085 6085 0.11354048739940481 DALCYAHTF 9 Carbamidomethyl (C) _DALC(Carbamidomethyl (C))YAHTF_ DALC(1)YAHTF DALC(82)YAHTF 0 1 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2396850585938 2 549.239667 1096.46478 0.17738 9.7424E-05 -1.118 -0.00061405 -0.94062 -0.00051662 549.2390622094395 49.011 0.36681 49.011 48.808 49.174 0 39 17 3 0 0 0 0.0095811 1 26919 26919 81.613 65.766 1 8154700 5183 261 3458 3538 6086 6086 8 -0.07959353222281607 DALELNQTF 9 Unmodified _DALELNQTF_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.E375Dfs*23|1|0.07|ENSG00000129422|chr8:17754679-17754683|TGTCT/-|frameshift_variant nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7587280273438 2 525.758746 1049.50294 0.45317 0.00023826 0.26699 0.00014037 0.72015 0.00037863 525.7586909422604 63.812 0.43389 63.812 63.612 64.046 0 42 17 3 0 0 0 0.06294 2 35636 35538;35636 41.84 22.583 1 10443000 5184 16181 3459 3539 6087;6088 6088 -0.019831440359666885 DALEQAILL 9 Unmodified _DALEQAILL_ 0 0 0 REV__nc|ENSG00000160360|Q86YR5-3|GPSM1 REV__nc|ENSG00000160360|Q86YR5-3|GPSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 985.5560302734375 1 985.556438 984.549162 0.048138 4.7442E-05 0.32192 0.00031727 0.37005 0.00036471 985.5567343262685 89.316 0.28448 89.316 89.186 89.471 0 28 13 3 0 0 0 0.34999 1 49387 49387 14.838 0 1 1441100 + 5185 21540 3460 3540 6089 6089 0.056269208661547054 DALFNVLFL 9 Unmodified _DALFNVLFL_ 0 0 0 ENST00000468090.5_1_21:45178781-45178892:+|nuORF ENST00000468090.5_1_21:45178781-45178892:+|nuORF ENST00000468090.5_1_21:45178781-45178892:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 526.2955932617188 2 526.294768 1050.57498 NaN NaN NaN NaN NaN NaN NaN 56.925 1 50.948 50.448 51.448 -5.9769 0 0 0 0.18753 1 36367 36367 32.305 0 1 5186 13798 3461 3541 6090 6090 0.05171815108406008 DALGEAINEY 10 Unmodified _DALGEAINEY_ 0 0 0 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7536010742188 2 547.753661 1093.49277 0.86176 0.00047203 -0.70735 -0.00038745 0.15441 8.458E-05 547.7535349539829 54.143 0.36082 54.143 53.991 54.352 0 36 16 3 0 0 0 0.13391 1 30047 30047 41.84 16.44 1 8546700 5187 10302 3462 3542 6091 6091 -0.05023751761177664 DALGHFFQY 9 Unmodified _DALGHFFQY_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2554931640625 2 549.256174 1096.49779 0.43952 0.00024141 -0.74371 -0.00040849 -0.30418 -0.00016708 549.254484164007 69.076 0.20288 69.076 69.023 69.226 0 11 8 2 0 0 0 0.32871 1 38507 38507 15.847 5.7733 1 612870 5188 4351 3463 3543 6092 6092 -0.046594031078939224 DALGHFFQY 9 Unmodified _DALGHFFQY_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2565307617188 2 549.256174 1096.49779 -0.12276 -6.7426E-05 0.85664 0.00047052 0.73388 0.00040309 549.2567507242662 69.622 0.57194 69.143 68.9 69.472 -0.47903 75 24 5 0 0 0 0.03568 3 37994 37972;37994;38089 52.268 34.122 1 17400000 5189 4351 3463 3543 6093;6094;6095 6094 -0.046594031078939224 DALGHFFQY 9 Unmodified _DALGHFFQY_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2561645507812 2 549.256174 1096.49779 0.55184 0.0003031 0.35829 0.00019679 0.91013 0.0004999 549.2563070443997 69.091 0.30318 69.122 68.97 69.273 0.030914 35 14 3 0 0 0 0.10734 1 37950 37950 32.305 8.2849 1 6653200 5190 4351 3463 3543 6096 6096 -0.046594031078939224 DALGHFFQY 9 Unmodified _DALGHFFQY_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7583618164062 2 549.256174 1096.49779 0.31037 0.00017047 -0.71347 -0.00039188 -0.4031 -0.00022141 549.2555612643821 78.651 0.625 72.475 72.204 72.829 -6.1757 68 37 2 0 0 0 0.12424 2 51363 51363;51536 30.637 9.0996 1 21756000 5191 4351 3463 3543 6097;6098 6097 -0.046594031078939224 DALGLVEYL 9 Unmodified _DALGLVEYL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2;ENST00000588824.1_1_18:12724471-12725527:+|nuORF ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7679138183594 2 496.768583 991.522613 0.85037 0.00042244 -1.2172 -0.00060468 -0.36686 -0.00018224 496.7683572357938 57.016 0.21554 56.948 56.839 57.055 -0.068371 12 10 2 0 0 0 0.41742 1 31058 31058 11.64 0 1 2174600 5192 4089 3464 3544 6099 6099 0.02651231974800794 DALHTVEKY 9 Unmodified _DALHTVEKY_ 0 0 0 nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP nc|ENSG00000197429|Q9Y573-2|IPP nc|ENSG00000197429|Q9Y573-2|IPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.185302734375 3 359.185468 1074.53457 0.094978 3.4115E-05 0.36848 0.00013235 0.46346 0.00016647 359.1855570885113 31.279 0.18584 31.279 31.174 31.359 0 13 8 2 0 0 0 0.42049 1 16301 16301 11.495 6.5977 1 1023100 5193 9953 3465 3545 6100 6100 0.0002884871798869426 DALIISEH 8 Unmodified _DALIISEH_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2377624511719 2 449.23745 896.460347 0.40488 0.00018189 0.0058759 2.6397E-06 0.41076 0.00018453 449.23728994686957 39.625 0.24995 39.625 39.508 39.758 0 16 11 2 0 0 0 0.26159 1 21261 21261 60.39 22.238 1 2383100 5194 2482 3466 3546 6101 6101 0.007975056264740488 DALIKQYI 8 Unmodified _DALIKQYI_ 0 0 0 REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2787170410156 2 482.279118 962.543683 0.79245 0.00038218 -0.29883 -0.00014412 0.49362 0.00023806 482.27894467183785 68.284 0.74348 62.109 61.89 62.633 -6.1757 85 43 3 0 0 0 0.23628 1 44720 44720 64.236 0 1 53199000 + 5195 28839 3467 3547 6102 6102 0.060912420743079565 DALKEDWQF 9 Unmodified _DALKEDWQF_ 0 0 0 nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1 nc|ENSG00000170175|P11230-2|CHRNB1 nc|ENSG00000170175|P11230-2|CHRNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2718505859375 2 576.272021 1150.52949 0.66006 0.00038038 1.4332 0.00082591 2.0933 0.0012063 576.2730920818539 60.762 0.58722 60.762 60.536 61.123 0 44 24 3 0 0 0 0.30202 2 33813 33813;33923 17.113 7.039 1 4431100 5196 7955 3468 3548 6103;6104 6103 -0.039754551446321784 DALKEDWQF 9 Unmodified _DALKEDWQF_ 0 0 0 nc|ENSG00000170175|P11230-2|CHRNB1;ENSG00000170175|ENST00000306071|CHRNB1 nc|ENSG00000170175|P11230-2|CHRNB1 nc|ENSG00000170175|P11230-2|CHRNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.77197265625 2 576.272021 1150.52949 0.74179 0.00042748 -2.704 -0.0015582 -1.9622 -0.0011308 576.2721822230093 67.546 0.62034 61.37 60.981 61.601 -6.1757 73 34 3 0 0 0 0.0093064 1 43914 43914 83.429 45.455 1 24723000 5197 7955 3468 3548 6105 6105 -0.039754551446321784 DALKILQY 8 Unmodified _DALKILQY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENST00000555122.1_1_14:105421221-105423995:-|nuORF nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2789001464844 2 482.279118 962.543683 0.28354 0.00013674 -0.081472 -3.9292E-05 0.20206 9.7451E-05 482.27907919602126 61.534 0.34201 61.534 61.343 61.685 0 39 15 3 0 0 0 0.21098 2 34361 34265;34361 68.081 23.674 1 5322600 5198 9384 3469 3549 6106;6107 6107 0.06091242074319325 DALKILQY 8 Unmodified _DALKILQY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENST00000555122.1_1_14:105421221-105423995:-|nuORF nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2795104980469 2 482.279118 962.543683 0.63644 0.00030694 0.036732 1.7715E-05 0.67317 0.00032466 482.2791277846908 62.015 0.35844 61.527 61.345 61.704 -0.48764 53 16 4 0 0 0 0.14033 2 33827 33729;33827 88.954 24.882 1 23648000 5199 9384 3469 3549 6108;6109 6109 0.06091242074319325 DALKILQY 8 Unmodified _DALKILQY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;ENST00000555122.1_1_14:105421221-105423995:-|nuORF nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2796325683594 2 482.279118 962.543683 0.79245 0.00038218 -0.29883 -0.00014412 0.49362 0.00023806 482.27894467183785 68.284 0.74348 62.109 61.89 62.633 -6.1757 85 43 3 0 0 0 0.077912 2 44461 44461;44592 115.69 26.788 1 53199000 5200 9384 3469 3549 6110;6111 6110 0.06091242074319325 DALKTVQAF 9 Unmodified _DALKTVQAF_ 0 0 0 nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1 nc|ENSG00000134531|P54849-2|EMP1 nc|ENSG00000134531|P54849-2|EMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7738647460938 2 496.7742 991.533846 0.0052 2.5832E-06 -0.030153 -1.4979E-05 -0.024953 -1.2396E-05 496.77414530149554 48.299 0.28153 48.299 48.132 48.413 0 37 13 4 0 0 0 0.05483 2 26437 26437;26548 43.772 21.036 1 21593000 5201 4617 3470 3550 6112;6113 6112 0.03774054068958321 DALKTVQAF 9 Unmodified _DALKTVQAF_ 0 0 0 nc|ENSG00000134531|P54849-2|EMP1;ENSG00000134531|ENST00000256951|EMP1 nc|ENSG00000134531|P54849-2|EMP1 nc|ENSG00000134531|P54849-2|EMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7747497558594 2 496.7742 991.533846 0.38646 0.00019198 -0.13817 -6.864E-05 0.24829 0.00012334 496.77403462270473 48.55 0.23839 48.179 48.039 48.278 -0.37172 18 11 2 0 0 0 0.01958 1 26048 26048 63.961 29.559 1 7147000 5202 4617 3470 3550 6114 6114 0.03774054068958321 DALLQEIAL 9 Unmodified _DALLQEIAL_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2818908691406 2 493.281857 984.549162 0.15613 7.7015E-05 0.29288 0.00014447 0.44901 0.00022149 493.2819287018421 89.327 0.49765 89.327 89.076 89.574 0 78 25 4 0 0 0 0.19127 2 49528 49335;49528 24.021 6.9077 1 16803000 5203 2379 3471 3551 6115;6116 6116 0.05626920866131968 DALLQEIAL 9 Unmodified _DALLQEIAL_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 985.5628051757812 1 985.556438 984.549162 0.048138 4.7442E-05 0.32192 0.00031727 0.37005 0.00036471 985.5567343262685 89.316 0.28448 89.316 89.186 89.471 0 28 13 3 0 0 0 0.47846 1 49483 49483 8.7454 0 1 1441100 5204 2379 3471 3551 6117 6117 0.05626920866131968 DALLQEIAL 9 Unmodified _DALLQEIAL_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2838439941406 2 493.281857 984.549162 0.63492 0.00031319 -0.7848 -0.00038713 -0.14988 -7.3934E-05 493.28132395210616 89.895 0.35006 89.394 89.217 89.567 -0.50171 41 18 3 0 0 0 0.23158 2 49084 49084;49178 20.454 8.8133 1 1742200 5205 2379 3471 3551 6118;6119 6118 0.05626920866131968 DALLSETAF 9 Unmodified _DALLSETAF_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7427978515625 2 483.742565 965.470577 0.38751 0.00018746 -0.9792 -0.00047368 -0.59169 -0.00028622 483.74247609568425 68.89 0.32938 68.89 68.717 69.046 0 24 13 2 0 0 0 0.39863 2 38362 38362;38460 12.532 3.1841 1 1678700 5206 8304 3472 3552 6120;6121 6120 -0.013539314389618085 DALLTKELY 9 Unmodified _DALLTKELY_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2950439453125 2 533.294965 1064.57538 -0.45698 -0.00024371 0.89326 0.00047637 0.43627 0.00023266 533.2953793405604 55.426 0.33137 55.426 55.241 55.573 0 39 14 4 0 0 0 0.01958 2 30744 30744;30849 63.961 7.7835 1 11437000 5207 682 3473 3553 6122;6123 6122 0.04567190037619184 DALNSIHLY 9 Unmodified _DALNSIHLY_ 0 0 0 ENSG00000101871|ENST00000317552|MID1 ENSG00000101871|ENST00000317552|MID1 ENSG00000101871|ENST00000317552|MID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2694091796875 2 523.269281 1044.52401 0.85 0.00044478 0.73313 0.00038363 1.5831 0.0008284 523.2696635411393 60.2 0.29967 60.2 60.046 60.345 0 31 12 3 0 0 0 0.070838 1 33549 33549 39.957 5.8549 1 3797800 5208 1996 3474 3554 6124 6124 0.0035286606357658457 DALQEAGTF 9 Unmodified _DALQEAGTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000560694.1_1_17:78328263-78334101:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.224853515625 2 476.224539 950.434526 -0.13717 -6.5324E-05 0.94844 0.00045167 0.81127 0.00038635 476.2253141583567 48.866 0.27089 48.866 48.715 48.986 0 20 12 2 0 0 0 0.08691 1 26860 26860 36.127 3.8215 1 3804700 5209 8367 3475 3555 6125 6125 -0.042673886158013374 DALQLEYSY 9 Unmodified _DALQLEYSY_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP;nc|ENSG00000089234|Q7Z569-2|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.25927734375 2 551.258579 1100.50261 0.34663 0.00019108 -1.24 -0.00068355 -0.89334 -0.00049246 551.2574328486747 61.709 0.32728 61.709 61.514 61.842 0 24 14 2 0 0 0 0.19127 1 34369 34369 24.021 13.947 1 1112200 5210 1524 3476 3556 6126 6126 -0.043625637557852315 DALQVAQEM 9 Oxidation (M) _DALQVAQEM(Oxidation (M))_ DALQVAQEM(1) DALQVAQEM(66) 0 0 1 nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENST00000422279.6_1_17:27041917-27042501:-|nuORF;ENST00000474704.1_1_17:27041945-27042505:-|nuORF;ENST00000484161.5_1_17:27041663-27042501:-|nuORF nc|ENSG00000109113|Q9BZG1-4|RAB34 nc|ENSG00000109113|Q9BZG1-4|RAB34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7364196777344 2 510.736957 1019.45936 NaN NaN NaN NaN NaN NaN NaN 33.085 1 33.085 32.585 33.585 0 0 0 0 0.030047 1 17323 17323 66.457 38.828 1 5211 2633 3477 3557 6127 6127 455 -0.04959076804732376 DALRCVNNY 9 Carbamidomethyl (C) _DALRC(Carbamidomethyl (C))VNNY_ DALRC(1)VNNY DALRC(42)VNNY 0 1 0 ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7614135742188 2 562.761297 1123.50804 0.27339 0.00015385 0.53093 0.00029879 0.80432 0.00045264 562.7615369884178 31.203 0.26879 31.203 31.091 31.359 0 39 12 4 0 0 0 0.062454 1 16245 16245 41.956 30.315 1 8844100 5212 5468 3478 3558 6128 6128 561 -0.048771634449849444 DALRCVNNY 9 Carbamidomethyl (C) _DALRC(Carbamidomethyl (C))VNNY_ DALRC(1)VNNY DALRC(80)VNNY 0 1 0 ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7615356445312 2 562.761297 1123.50804 1.2168 0.00068479 -0.92454 -0.0005203 0.29229 0.00016449 562.7603651597949 36.098 0.37775 31.905 31.741 32.118 -4.1928 56 22 3 0 0 0 0.010301 1 21091 21091 79.596 51.968 1 44339000 5213 5468 3478 3558 6129 6129 561 -0.048771634449849444 DALRDDFVF 9 Unmodified _DALRDDFVF_ 0 0 0 nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;nc|ENSG00000174227|Q5H8A4-3|PIGG;ENST00000502311.1_1_4:493115-495466:+|nuORF nc|ENSG00000174227|Q5H8A4-2|PIGG nc|ENSG00000174227|Q5H8A4-2|PIGG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.267333984375 2 549.266739 1096.51892 -0.039285 -2.1578E-05 1.3481 0.00074045 1.3088 0.00071887 549.2675293915231 71.097 0.39829 71.097 70.895 71.293 0 59 18 5 0 0 0 0.040683 2 39551 39551;39651 49.554 24.155 1 10180000 5214 8402 3479 3559 6130;6131 6130 -0.025474377990576613 DALREAERF 9 Unmodified _DALREAERF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.5245666503906 3 369.524484 1105.55162 0.089281 3.2991E-05 0.27904 0.00010311 0.36832 0.0001361 369.5245523846419 35.909 0.34208 35.909 35.732 36.074 0 57 16 5 0 0 0 0.012668 2 18969 18969;19083 59.052 30.907 1 106700000 5215 4592 3480 3560 6132;6133 6132 0.0030676932381084043 DALREAERF 9 Unmodified _DALREAERF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7828369140625 2 553.783087 1105.55162 0.49443 0.00027381 0.1859 0.00010295 0.68033 0.00037676 553.7830370997575 35.931 0.33744 35.931 35.776 36.113 0 60 16 5 0 0 0 0.040733 1 19000 19000 49.527 30.27 1 51752000 5216 4592 3480 3560 6134 6134 0.0030676932381084043 DALREAERF 9 Unmodified _DALREAERF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5252075195312 3 369.524484 1105.55162 1.3811 0.00051035 0.80198 0.00029635 2.1831 0.0008067 369.52462421263584 40.591 0.54982 36.062 35.806 36.356 -4.5294 100 33 4 0 0 0 0.029718 3 24329 24199;24329;24460 44.392 26.019 1 157890000 5217 4592 3480 3560 6135;6136;6137 6136 0.0030676932381084043 DALREAERF 9 Unmodified _DALREAERF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.78271484375 2 553.783087 1105.55162 0.82857 0.00045885 -0.043976 -2.4353E-05 0.78459 0.0004345 553.7826284305085 40.615 0.46624 36.086 35.873 36.339 -4.5294 73 28 4 0 0 0 0.020316 2 24213 24213;24343 63.227 30.442 1 72170000 5218 4592 3480 3560 6138;6139 6138 0.0030676932381084043 DALRKSFEM 9 Unmodified _DALRKSFEM_ 0 0 0 ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.77734375 2 548.776416 1095.53828 0.64325 0.000353 -0.13122 -7.2009E-05 0.51203 0.00028099 548.7759959866112 41.167 0.35098 36.559 36.371 36.722 -4.6079 34 21 2 0 0 0 0.011739 1 24723 24723 75.571 33.731 1 14667000 5219 10933 3481 3561 6140 6140 -0.0056680477980535215 DALRKSFEM 9 Unmodified _DALRKSFEM_ 0 0 0 ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.5472412109375 3 366.186703 1095.53828 1.3651 0.00049989 -0.15441 -5.6545E-05 1.2107 0.00044335 366.1865656664075 41.152 0.36834 36.545 36.353 36.722 -4.6079 41 22 2 0 0 0 0.20358 1 24753 24753 6.6304 0 1 20459000 5220 10933 3481 3561 6141 6141 -0.0056680477980535215 DALRLAAEY 9 Unmodified _DALRLAAEY_ 0 0 0 ENSG00000198535|ENST00000355522|C2CD4A;ENSG00000205502|ENST00000380392|C2CD4B ENSG00000198535|ENST00000355522|C2CD4A ENSG00000198535|ENST00000355522|C2CD4A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2901916503906 2 511.269281 1020.52401 0.33341 0.00017046 0.1872 9.571E-05 0.52061 0.00026617 511.2694495945456 50.478 0.1703 50.478 50.411 50.582 0 10 7 2 0 0 0 0.16979 1 27864 27864 20.581 8.9406 1 2342400 5221 10103 3482 3562 6142 6142 0.014568660635518427 DALSDQLHKQI 11 Unmodified _DALSDQLHKQI_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8063354492188 2 634.335684 1266.65681 -0.020779 -1.3181E-05 -1.9272 -0.0012225 -1.948 -0.0012357 634.3344348192812 55.661 0.12568 55.183 55.112 55.238 -0.47798 7 5 2 0 0 0 0.29799 1 30182 30182 12.241 6.0349 1 451960 + 5222 18564 3483 3563 6143 6143 0.034152657295635436 DALSTVLQY 9 Unmodified _DALSTVLQY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2638549804688 2 505.263665 1008.51278 0.26436 0.00013357 -0.036577 -1.8481E-05 0.22779 0.00011509 505.26363590173855 73.303 0.55537 72.827 72.563 73.118 -0.47588 79 24 4 0 0 0 0.012148 2 40073 40073;40181 74.423 23.369 1 39426000 5223 8515 3484 3564 6144;6145 6144 0.008860439694217348 DALSTVLQY 9 Unmodified _DALSTVLQY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.263916015625 2 505.263665 1008.51278 0.67182 0.00033945 0.36623 0.00018504 1.0381 0.00052449 505.26395684639203 81.926 0.71724 75.751 75.462 76.179 -6.1757 127 39 5 0 0 0 0.026094 2 53921 53681;53921 57.471 23.369 1 303180000 5224 8515 3484 3564 6146;6147 6147 0.008860439694217348 DALSTVLQY 9 Unmodified _DALSTVLQY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F;ENST00000530219.1_1_11:8014470-8016722:+|nuORF ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.263665 1008.51278 0.219 0.00011065 -0.6623 -0.00033464 -0.44329 -0.00022398 505.2635466035576 72.889 0.3288 72.931 72.719 73.048 0.041725 0.098926 -0.00048124 NaN 74.423 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4130200 5225 8515 3484 3564 0.008860439694217348 DALSVVNQL 9 Unmodified _DALSVVNQL_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;ENST00000523384.1_1_8:66525632-66539633:-|nuORF ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7633666992188 2 479.763832 957.513111 0.41493 0.00019907 0.88887 0.00042645 1.3038 0.00062552 479.7639577784864 68.01 0.29042 68.01 67.875 68.165 0 26 14 2 0 0 0 0.14602 1 37890 37890 28.487 11.545 1 1307700 5226 2208 3485 3565 6148 6148 0.032654636892857525 DALTFTTTF 9 Unmodified _DALTFTTTF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7506408691406 2 508.75039 1015.48623 0.36226 0.0001843 1.0467 0.0005325 1.4089 0.0007168 508.7506321640242 78.591 0.82442 78.591 78.432 79.256 0 74 38 3 0 0 0 0.14602 4 43714 43615;43714;43818;43934 28.487 15.955 1 1784500 5227 447 3486 3566 6149;6150;6151;6152 6150 -0.020896449219094393 DALTFTTTF 9 Unmodified _DALTFTTTF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1016.486206054688 1 1016.4935 1015.48623 0.5129 0.00052136 -0.89616 -0.00091095 -0.38327 -0.00038959 1016.4918697400286 79.205 0.57236 78.719 78.506 79.078 -0.48596 41 24 2 0 0 0 0.095405 1 43489 43489 34.102 22.462 1 1498400 5228 447 3486 3566 6153 6153 -0.020896449219094393 DALTFTTTF 9 Unmodified _DALTFTTTF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7508544921875 2 508.75039 1015.48623 0.35883 0.00018255 0.86638 0.00044077 1.2252 0.00062332 508.7506295504055 79.196 0.92095 78.71 78.436 79.357 -0.48596 88 40 3 0 0 0 0.2001 2 43503 43503;43647 23.148 10.617 1 3607000 5229 447 3486 3566 6154;6155 6154 -0.020896449219094393 DALTFTTTF 9 Unmodified _DALTFTTTF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7509155273438 2 508.75039 1015.48623 0.86862 0.00044191 0.13226 6.7289E-05 1.0009 0.0005092 508.7503159808681 87.329 0.70599 81.154 80.77 81.476 -6.1757 115 38 4 0 0 0 0.06187 3 57564 57437;57564;57693 42.095 13.608 1 237460000 5230 447 3486 3566 6156;6157;6158 6157 -0.020896449219094393 DALTFTTTF 9 Unmodified _DALTFTTTF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1016.4935 1015.48623 -0.22325 -0.00022693 0.48066 0.00048859 0.25741 0.00026165 1016.4935756750765 78.669 0.42245 78.669 78.449 78.872 0 -0.024847 0.00083738 NaN 34.102 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 803970 5231 447 3486 3566 -0.020896449219094393 DALVFGHLY 9 Unmodified _DALVFGHLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7693481445312 2 517.768917 1033.52328 0.39987 0.00020704 0.26541 0.00013742 0.66528 0.00034446 517.769101571771 71.199 0.35742 70.722 70.568 70.926 -0.47736 34 15 3 0 0 0 0.068777 1 38958 38958 40.449 25.2 1 4065900 5232 4082 3487 3567 6159 6159 0.007860714145181191 DALVFGHLY 9 Unmodified _DALVFGHLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.768917 1033.52328 0.037858 1.9602E-05 0.92374 0.00047829 0.9616 0.00049789 517.7686735013177 70.664 0.072243 70.664 70.614 70.686 0 -0.028711 0.00066108 NaN 40.449 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 254390 5233 4082 3487 3567 0.007860714145181191 DALVHAQF 8 Unmodified _DALVHAQF_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7325134277344 2 450.732335 899.450116 0.49068 0.00022116 -0.31701 -0.00014289 0.17367 7.8276E-05 450.732260209216 45.727 0.23344 45.727 45.605 45.838 0 19 11 2 0 0 0 0.26159 1 24924 24924 60.39 22.238 1 6493200 5234 269 3488 3568 6160 6160 -0.003630573080954491 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2478637695312 2 466.247818 930.481082 1.072 0.00049982 -0.68403 -0.00031893 0.38798 0.0001809 466.24742629757037 47.733 0.419 47.733 47.517 47.936 0 73 19 5 0 0 0 0.26159 2 26066 26066;26176 60.39 15.983 1 198540000 5235 2681 3489 3569 6161;6162 6161 0.013060960061238802 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4888916015625 1 931.488359 930.481082 0.96585 0.00089968 0.71163 0.00066287 1.6775 0.0015626 931.489638384914 47.745 0.25133 47.745 47.601 47.852 0 24 11 3 0 0 0 0.70294 2 26101 26101;26150 16.942 6.8684 1 3067000 5236 2681 3489 3569 6163;6164 6163 0.013060960061238802 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2478942871094 2 466.247818 930.481082 0.48101 0.00022427 -0.23095 -0.00010768 0.25006 0.00011659 466.2477950570742 48.05 0.21584 47.697 47.555 47.771 -0.3526 19 10 3 0 0 0 0.24071 1 25761 25761 63.563 16.642 1 4000400 5237 2681 3489 3569 6165 6165 0.013060960061238802 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2487182617188 2 466.247818 930.481082 NaN NaN NaN NaN NaN NaN NaN 47.726 1 47.687 47.187 48.187 -0.038643 0 0 0 0.57076 1 25723 25723 36.044 16.787 1 5238 2681 3489 3569 6166 6166 0.013060960061238802 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2479858398438 2 466.247818 930.481082 1.1266 0.00052529 -0.13852 -6.4583E-05 0.98813 0.00046071 466.2477934735953 54.336 0.53179 48.471 48.247 48.779 -5.8653 98 32 4 0 0 0 0.31612 2 34493 34356;34493 53.576 21.459 1 227140000 5239 2681 3489 3569 6167;6168 6168 0.013060960061238802 DALVITHY 8 Unmodified _DALVITHY_ 0 0 0 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 ENSG00000109917|ENST00000227322|ZPR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 931.488525390625 1 931.488359 930.481082 1.2253 0.0011414 0.7143 0.00066537 1.9396 0.0018068 931.4884872808332 54.342 0.43741 48.476 48.23 48.668 -5.8653 47 26 2 0 0 0 0.078546 2 34365 34365;34504 112.59 59.018 1 23135000 5240 2681 3489 3569 6169;6170 6169 0.013060960061238802 DAMAHVAGF 9 Oxidation (M) _DAM(Oxidation (M))AHVAGF_ DAM(1)AHVAGF DAM(48)AHVAGF 0 0 1 ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A;ENST00000607780.5_1_2:96676383-96687353:+|nuORF ENSG00000144199|ENST00000414820|FAHD2B ENSG00000144199|ENST00000414820|FAHD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7076721191406 2 467.708002 933.401452 -0.15106 -7.065E-05 0.57717 0.00026994 0.42611 0.00019929 467.7076113756635 34.948 0.43585 34.948 34.636 35.072 0 29 22 2 0 0 0 0.042911 1 18444 18444 48.346 26.599 1 2056500 5241 3080 3490 3570 6171 6171 535 -0.06791293939488696 DAMDISCAY 9 Carbamidomethyl (C),Oxidation (M) _DAM(Oxidation (M))DISC(Carbamidomethyl (C))AY_ DAMDISC(1)AY DAM(1)DISCAY DAMDISC(42)AY DAM(42)DISCAY 0 1 1 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2000122070312 2 531.19935 1060.38415 1.2424 0.00065999 -0.95027 -0.00050478 0.29218 0.0001552 531.1991519797696 40.957 0.43181 36.35 36.134 36.566 -4.6079 57 26 3 0 0 0 0.06187 1 24600 24600 42.095 20.348 1 22093000 5242 3521 3491 3571 6172 6172 353 624 -0.14363002327468166 DAMDISCAY 9 Carbamidomethyl (C) _DAMDISC(Carbamidomethyl (C))AY_ DAMDISC(1)AY DAMDISC(42)AY 0 1 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7036743164062 2 523.201892 1044.38923 0.78986 0.00041326 -1.5301 -0.00080056 -0.74026 -0.0003873 523.2013731156521 57.038 0.37228 51.061 50.827 51.2 -5.9769 48 22 3 0 0 0 0.06187 2 36318 36318;36459 42.095 26.247 1 29009000 5243 3521 3491 3572 6173;6174 6173 353 -0.13118698464859335 DAMKVWWGYFY 11 Unmodified _DAMKVWWGYFY_ 0 0 0 REV__ENST00000478716.1_1_3:29739933-29740044:+|nuORF REV__ENST00000478716.1_1_3:29739933-29740044:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2681884765625 3 489.225158 1464.65364 -0.095436 -4.669E-05 0.5299 0.00025924 0.43447 0.00021255 489.22574718252235 33.271 0.25957 33.112 32.936 33.196 -0.15918 23 10 3 0 0 0 0.30526 1 17342 17342 0.36667 0.36667 1 2635900 + 5244 27642 3492 3573 6175 6175 -0.060097006487922044 DAMQAAVQY 9 Oxidation (M) _DAM(Oxidation (M))QAAVQY_ DAM(1)QAAVQY DAM(54)QAAVQY 0 0 1 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7237548828125 2 506.723849 1011.43315 -0.31439 -0.00015931 0.29388 0.00014892 -0.020509 -1.0393E-05 506.7241853393087 30.032 0.37523 30.032 29.847 30.222 0 36 17 3 0 0 0 0.032796 1 15552 15552 53.833 32.086 1 3645100 5245 4022;16177 3493 3574 6176 6176 718 -0.07211345976213579 DAMQAAVQY 9 Unmodified _DAMQAAVQY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7265930175781 2 498.726392 995.438231 0.86872 0.00043325 0.055862 2.786E-05 0.92458 0.00046111 498.7265860551429 49.836 0.29873 44.297 44.167 44.466 -5.5391 26 18 2 0 0 0 0.047788 2 31275 31137;31275 45.7 25.246 1 16857000 5246 4022;16177 3493 3575 6177;6178 6178 -0.05967042113604748 DANDNSPVF 9 Unmodified _DANDNSPVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1;ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 ENSG00000083857|ENST00000441802|FAT1;ENSG00000165323|ENST00000525166|FAT3 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7110595703125 2 489.711796 977.40904 0.80015 0.00039184 -0.83444 -0.00040864 -0.03429 -1.6792E-05 489.71125340017784 42.523 0.43723 42.523 42.339 42.776 0 33 21 2 0 0 0 0.047196 1 23018 23018 46.021 8.047 1 4157800 5247 1378;7326 3494 3576 6179 6179 -0.08056863138233439 DANEAEPVF 9 Unmodified _DANEAEPVF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;ENST00000469467.1_1_7:150773072-150773451:+|nuORF nc|ENSG00000164889|P04920-2|SLC4A2 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2215576171875 2 496.221997 990.429441 0.31181 0.00015473 -0.55326 -0.00027454 -0.24145 -0.00011981 496.22218624458617 48.101 0.21313 48.101 47.936 48.149 0 16 10 2 0 0 0 0.06294 1 26380 26380 41.84 16.44 1 1826300 5248 7258 3495 3577 6180 6180 -0.06615692478419533 DANFTVVVM 9 Oxidation (M) _DANFTVVVM(Oxidation (M))_ DANFTVVVM(1) DANFTVVVM(50) 0 0 1 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2440795898438 2 506.244418 1010.47428 0.49776 0.00025199 0.78801 0.00039892 1.2858 0.00065091 506.2443631587204 65.243 0.44809 59.067 58.803 59.251 -6.1757 41 24 2 0 0 0 0.039985 1 42272 42272 49.933 9.9757 1 27860000 5249 4276 3496 3578 6181 6181 759 -0.030535849367197443 DANFTVVVM 9 Unmodified _DANFTVVVM_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.4840087890625 1 995.486644 994.479368 0.58827 0.00058561 -1.0326 -0.001028 -0.44438 -0.00044237 995.4862426734342 84.227 0.33218 78.051 77.874 78.206 -6.1757 23 18 2 0 0 0 0.0090524 1 55385 55385 85.642 39.621 1 6768200 5250 4276 3496 3579 6182 6182 -0.018092810740995446 DANHYIILF 9 Unmodified _DANHYIILF_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2871704101562 2 553.287474 1104.5604 0.66905 0.00037018 0.0053681 2.9701E-06 0.67442 0.00037315 553.2870305590172 83.944 0.26136 83.444 83.288 83.55 -0.49961 18 10 2 0 0 0 0.20428 1 45948 45948 22.736 6.8891 1 1083400 5251 4224 3497 3580 6183 6183 0.012297429602767807 DANIKSPALAF 11 Unmodified _DANIKSPALAF_ 0 0 0 nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;ENSG00000112531|ENST00000361752|QKI nc|ENSG00000112531|Q96PU8-9|QKI nc|ENSG00000112531|Q96PU8-9|QKI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8109130859375 2 573.811313 1145.60807 0.45494 0.00026105 -0.65403 -0.00037529 -0.19909 -0.00011424 573.810889599731 39.438 0.35118 39.438 39.224 39.575 0 59 16 5 0 0 0 0.69838 1 21185 21185 8.7454 8.7454 1 68893000 5252 2897 3498 3581 6184 6184 0.041093971604595936 DANPETHAF 9 Unmodified _DANPETHAF_ 0 0 0 ENSG00000100412|ENST00000216254|ACO2 ENSG00000100412|ENST00000216254|ACO2 ENSG00000100412|ENST00000216254|ACO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7216796875 2 501.219788 1000.42502 -0.43237 -0.00021671 0.30344 0.00015209 -0.12893 -6.4621E-05 501.21974389155315 28.061 0.26628 28.061 27.985 28.251 0 31 16 2 0 0 0 0.10734 1 14474 14474 32.305 22.122 1 4655800 5253 1819 3499 3582 6185 6185 -0.07517156901326416 DANPETHAF 9 Unmodified _DANPETHAF_ 0 0 0 ENSG00000100412|ENST00000216254|ACO2 ENSG00000100412|ENST00000216254|ACO2 ENSG00000100412|ENST00000216254|ACO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.220947265625 2 501.219788 1000.42502 0.95536 0.00047884 -0.41916 -0.00021009 0.53619 0.00026875 501.21950401853746 32.057 0.28625 28.361 28.175 28.461 -3.6958 23 15 2 0 0 0 0.03568 1 18162 18162 52.268 33.011 1 10831000 5254 1819 3499 3582 6186 6186 -0.07517156901326416 DANSEVTVY 9 Unmodified _DANSEVTVY_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2271118164062 2 499.227279 996.440005 0.60906 0.00030406 -0.35888 -0.00017916 0.25018 0.00012489 499.22734671446466 36.923 0.26444 36.923 36.754 37.018 0 25 12 3 0 0 0 0.12424 1 19587 19587 30.637 19.813 1 1886000 5255 1247 3500 3583 6187 6187 -0.05835709823998059 DAPCEGGF 8 Unmodified _DAPCEGGF_ 0 0 0 REV__ENSG00000124116|ENST00000243938|WFDC3 REV__ENSG00000124116|ENST00000243938|WFDC3 MSMS AL20221201_MKP_PDAC_01 4 398.5255737304688 2 398.152529 794.290504 NaN NaN NaN NaN NaN NaN NaN 45.465 1 40.51 40.01 41.01 -4.9549 0 0 0 0.97444 1 27916 27916 2.5775 0.27475 1 + 5256 19414 3501 3584 6188 6188 -0.11486933647574915 DAPGLALDFP 10 Unmodified _DAPGLALDFP_ 0 0 0 nc|ENSG00000226777|Q9NZY2|FAM30A nc|ENSG00000226777|Q9NZY2|FAM30A nc|ENSG00000226777|Q9NZY2|FAM30A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2598266601562 2 508.258382 1014.50221 0.37685 0.00019153 0.55034 0.00027972 0.92719 0.00047125 508.2584837405881 76.683 0.38387 76.683 76.468 76.852 0 37 15 3 0 0 0 0.67033 1 42560 42560 6.2058 2.9245 1 2774300 5257 16554 3502 3585 6189 6189 -0.0044593868499305245 DAPKAWNY 8 Unmodified _DAPKAWNY_ 0 0 0 nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1 nc|ENSG00000007062|O43490-5|PROM1 nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7290954589844 2 482.729792 963.445031 0.21225 0.00010246 -0.81207 -0.00039201 -0.59982 -0.00028955 482.72937814230517 62.42 0.29853 62.42 62.29 62.589 0 37 20 2 0 0 0 0.78849 1 34905 34905 9.3474 0.75416 1 7100900 5258 355 3503 3586 6190 6190 -0.038153611707230084 DAPLRDPALRQ 11 Unmodified _DAPLRDPALRQ_ 0 0 0 ENST00000586443.1_1_17:42429890-42430163:+|nuORF;nc|ENSG00000030582|P28799-3|GRN;nc|ENSG00000030582|P28799-2|GRN;ENSG00000030582|ENST00000053867|GRN ENST00000586443.1_1_17:42429890-42430163:+|nuORF ENST00000586443.1_1_17:42429890-42430163:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8992309570312 3 417.898321 1250.67313 -0.097413 -4.0709E-05 1.3004 0.00054342 1.203 0.00050271 417.8988107261851 29.741 0.19396 29.772 29.674 29.868 0.030106 12 7 2 0 0 0 0.34849 1 15534 15534 24.229 16.283 1 2993500 5259 587 3504 3587 6191 6191 0.057823916863071645 DAPLSPLFY 9 Unmodified _DAPLSPLFY_ 0 0 0 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7640686035156 2 511.7633 1021.51205 -0.97703 -0.00050001 -0.053472 -2.7365E-05 -1.0305 -0.00052737 511.7631949679959 77.962 0.36671 77.479 77.269 77.636 -0.4826 81 30 3 0 0 0 0.39863 1 42731 42731 12.532 0 1 12014000 + 5260 20195 3505 3588 6192 6192 0.0021524932037664257 DAPPSLPLTI 10 Unmodified _DAPPSLPLTI_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.5513916015625 2 512.289682 1022.56481 0.66052 0.00033838 0.082074 4.2046E-05 0.74259 0.00038042 512.2895909899277 60.504 0.30037 60.504 60.345 60.646 0 29 13 3 0 0 0 0.23412 1 33681 33681 9.3831 6.4939 1 2227500 5261 7087 3506 3589 6193 6193 0.05443207383189019 DAPQSHVSL 9 Unmodified _DAPQSHVSL_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2376708984375 2 477.237981 952.461409 -0.17757 -8.4743E-05 0.59646 0.00028465 0.41889 0.00019991 477.23825756018124 22.113 0.27673 22.113 21.968 22.245 0 31 17 3 0 0 0 0.54444 1 11209 11209 4.756 0 1 1413600 + 5262 16987 3507 3590 6194 6194 -0.016722800046068187 DAPSVHHLRLR 11 Unmodified _DAPSVHHLRLR_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.8667602539062 2 650.865277 1299.716 0.74011 0.00048171 0.52387 0.00034097 1.264 0.00082268 650.8658085721484 81.072 0.4584 80.58 80.334 80.792 -0.49247 88 27 4 0 0 0 0.66428 2 44319 44319;44415 7.609 7.609 1 43599000 + 5263 20594 3508 3591 6195;6196 6195 0.0781320653441071 DAPYQAHARC 10 Unmodified _DAPYQAHARC_ 0 0 0 REV__ENST00000373225.7_1_9:130565640-130566634:+|nuORF REV__ENST00000373225.7_1_9:130565640-130566634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2548217773438 2 566.25364 1130.49273 NaN NaN NaN NaN NaN NaN NaN 85.605 1 85.104 84.604 85.604 -0.5015 0 0 0 0.97855 1 46851 46851 2.9952 0.10602 1 + 5264 26137 3509 3592 6197 6197 -0.0673003024216996 DAQELRTAL 9 Unmodified _DAQELRTAL_ 0 0 0 ENSG00000143412|ENST00000368947|ANXA9 ENSG00000143412|ENST00000368947|ANXA9 ENSG00000143412|ENST00000368947|ANXA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7729187011719 2 508.772188 1015.52982 0.32949 0.00016764 1.9885 0.0010117 2.3179 0.0011793 508.7732748549593 39.901 0.19742 39.901 39.832 40.03 0 16 9 2 0 0 0 0.047714 1 21454 21454 45.74 5.7902 1 13856000 5265 5508 3510 3593 6198 6198 0.02267964575219139 DAQKAYIM 8 Unmodified _DAQKAYIM_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MSMS AL20221201_MKP_PDAC_01 4 470.2373352050781 2 470.233853 938.453153 NaN NaN NaN NaN NaN NaN NaN 39.725 1 35.274 34.774 35.774 -4.4509 0 0 0 0.45366 1 23616 23616 46.021 15.796 1 5266 4070 3511 3594 6199 6199 -0.018535502456188624 DAQTCHGCGSR 11 Unmodified _DAQTCHGCGSR_ 0 0 0 REV__ENST00000391702.3_1_19:58281028-58281229:+|nuORF REV__ENST00000391702.3_1_19:58281028-58281229:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8185729980469 3 378.818685 1133.43423 0.27079 0.00010258 1.7464 0.00066157 2.0172 0.00076415 378.8186201684245 50.019 0.28828 50.019 49.883 50.171 0 41 13 5 0 0 0 0.64653 1 27549 27549 7.4291 0.7987 1 12267000 + 5267 26371 3512 3595 6200 6200 -0.12715454878957644 DARATMELY 9 Oxidation (M) _DARATM(Oxidation (M))ELY_ DARATM(1)ELY DARATM(50)ELY 0 0 1 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.251953125 2 543.250231 1084.48591 0.13838 7.5176E-05 -0.83827 -0.00045539 -0.69989 -0.00038022 543.250107804707 31.535 0.54424 31.535 31.234 31.778 0 91 26 5 0 0 0 0.040683 1 16335 16335 49.554 34.716 1 42409000 5268 8189 3513 3596 6201 6201 1389 -0.0529538791338382 DARATMELY 9 Oxidation (M) _DARATM(Oxidation (M))ELY_ DARATM(1)ELY DARATM(66)ELY 0 0 1 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2517700195312 2 543.250231 1084.48591 0.79859 0.00043384 1.4119 0.00076701 2.2105 0.0012008 543.2507791724571 36.235 0.58877 32.042 31.613 32.202 -4.1928 102 35 4 0 0 0 0.017075 1 20914 20914 66.457 39.573 1 81110000 5269 8189 3513 3596 6202 6202 1389 -0.0529538791338382 DARATMELY 9 Unmodified _DARATMELY_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2553100585938 2 535.252774 1068.491 -0.23429 -0.0001254 2.486 0.0013306 2.2517 0.0012052 535.2547693418024 44.85 0.26709 44.85 44.769 45.036 0 32 13 3 0 0 0 0.025842 1 24451 24451 57.722 21.256 1 25462000 5270 8189 3513 3597 6203 6203 -0.04051084050774989 DARATMELY 9 Unmodified _DARATMELY_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2528076171875 2 535.252774 1068.491 0.81282 0.00043506 0.058017 3.1054E-05 0.87084 0.00046612 535.252407816817 51.336 0.51456 45.687 45.43 45.945 -5.649 82 31 4 0 0 0 0.085319 1 32215 32215 36.506 16.053 1 215370000 5271 8189 3513 3597 6204 6204 -0.04051084050774989 DAREDYIEF 9 Unmodified _DAREDYIEF_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.260498046875 2 579.259111 1156.50367 -0.032819 -1.9011E-05 0.87837 0.0005088 0.84555 0.00048979 579.2598275681281 56.299 0.45072 56.299 56.184 56.635 0 41 20 3 0 0 0 0.27545 1 31395 31395 18.373 8.99 1 6632700 5272 3705 3514 3598 6205 6205 -0.06832349386900205 DARGNYIYI 9 Unmodified _DARGNYIYI_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.776611328125 2 542.774731 1083.53491 0.24566 0.00013334 3.0254 0.0016421 3.271 0.0017754 542.7760905345036 50.506 0.22954 50.506 50.331 50.56 0 16 10 2 0 0 0 0.46501 1 27867 27867 9.3831 0.63772 1 1338000 + 5273 18960 3515 3599 6206 6206 -0.0035173156215932977 DARLEDEGGYF 11 Unmodified _DARLEDEGGYF_ 0 0 0 ENSG00000105767|ENST00000222374|CADM4 ENSG00000105767|ENST00000222374|CADM4 ENSG00000105767|ENST00000222374|CADM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.27978515625 2 636.280574 1270.5466 0.15302 9.7366E-05 -0.78466 -0.00049926 -0.63163 -0.0004019 636.2798609331684 48.06 0.19198 48.06 47.978 48.17 0 16 9 2 0 0 0 0.27261 1 26353 26353 28.234 15.191 1 3306800 5274 2361 3516 3600 6207 6207 -0.07785579329470238 DARLHTPMYFF 11 Unmodified _DARLHTPMYFF_ 0 0 0 ENSG00000148215|ENST00000373680|OR5C1 ENSG00000148215|ENST00000373680|OR5C1 ENSG00000148215|ENST00000373680|OR5C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.561279296875 3 466.56054 1396.65979 0.77148 0.00035994 0.94646 0.00044158 1.7179 0.00080152 466.5609790185897 50.765 0.39886 50.765 50.56 50.959 0 66 22 4 0 0 0 0.71036 1 28065 28065 1.3296 0 1 57940000 5275 5904 3517 3601 6208 6208 -0.022671824172903143 DASALRILF 9 Unmodified _DASALRILF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.292724609375 2 503.290017 1004.56548 0.090695 4.5646E-05 1.1659 0.00058677 1.2566 0.00063241 503.2902634704702 83.946 0.40374 83.446 83.241 83.645 -0.49962 55 16 5 0 0 0 0.0090524 2 45898 45898;45995 85.642 23.069 1 9678200 5276 3762;16168 3518 3602 6209;6210 6209 0.06338046822907017 DASALRILF 9 Unmodified _DASALRILF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2901306152344 2 503.290017 1004.56548 0.3592 0.00018078 0.36823 0.00018533 0.72743 0.00036611 503.2901799447886 83.358 0.36403 83.421 83.207 83.571 0.063171 45 13 4 0 0 0 0.0082353 2 46152 46050;46152 103.35 14.4 1 58271000 5277 3762;16168 3518 3602 6211;6212 6212 0.06338046822907017 DASALRILF 9 Unmodified _DASALRILF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2909851074219 2 503.290017 1004.56548 1.4266 0.00071797 0.36959 0.00018601 1.7961 0.00090398 503.2901043892159 98.076 0.63972 91.9 91.566 92.206 -6.1757 114 42 3 0 0 0 0.017075 2 64962 64962;65099 66.457 12.022 1 77046000 5278 3762;16168 3518 3602 6213;6214 6213 0.06338046822907017 DASALVAAL 9 Unmodified _DASALVAAL_ 0 0 0 ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4622192382812 1 830.46181 829.454533 0.086151 7.1545E-05 0.54832 0.00045536 0.63447 0.0005269 830.4622570204293 72.557 0.34187 72.557 72.334 72.676 0 28 13 3 0 0 0 0.026094 2 40421 40328;40421 57.471 9.1255 1 1735600 5279 4262 3519 3603 6215;6216 6216 0.03298407114800739 DASELKASM 9 Unmodified _DASELKASM_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2 ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2273559570312 2 476.226225 950.437897 0.91561 0.00043604 1.2155 0.00057888 2.1312 0.0010149 476.22718198049074 35.108 0.35361 31.013 30.801 31.155 -4.0951 28 20 2 0 0 0 0.010301 1 20290 20290 79.596 25.764 1 8081900 5280 9079 3520 3604 6217 6217 -0.03930461833442678 DASGAKLDY 9 Unmodified _DASGAKLDY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2247009277344 2 470.224539 938.434526 -0.46152 -0.00021702 0.7417 0.00034877 0.28018 0.00013175 470.2246407823551 28.299 0.32029 28.299 28.109 28.429 0 37 16 3 0 0 0 0.033587 2 14551 14551;14657 53.404 11.564 1 5757200 5281 1340 3521 3605 6218;6219 6218 -0.03715388615819393 DASGAKLDY 9 Unmodified _DASGAKLDY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENST00000464483.1_1_2:201677931-201680272:+|nuORF ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2250366210938 2 470.224539 938.434526 0.92979 0.00043721 2.2504 0.0010582 3.1802 0.0014954 470.22630745002624 32.472 0.4948 28.616 28.301 28.796 -3.8562 50 27 3 0 0 0 0.047714 1 18515 18515 45.74 11.338 1 23447000 5282 1340 3521 3605 6220 6220 -0.03715388615819393 DASGNYVNRIF 11 Unmodified _DASGNYVNRIF_ 0 0 0 REV__ENST00000473835.6_1_3:142775527-142775584:+|nuORF REV__ENST00000473835.6_1_3:142775527-142775584:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 419.2074890136719 3 419.207043 1254.5993 NaN NaN NaN NaN NaN NaN NaN 83.9 1 77.725 77.225 78.225 -6.1757 0 0 0 0.85601 1 55178 55178 4.7159 2.0847 1 + 5283 27551 3522 3606 6221 6221 -0.017815764760143793 DASHSSSTFSF 11 Unmodified _DASHSSSTFSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20221201_MKP_PDAC_01 4 391.4992980957031 3 391.500004 1171.47818 NaN NaN NaN NaN NaN NaN NaN 99.422 1 93.247 92.747 93.747 -6.1757 0 0 0 0.77961 1 66208 66208 7.0371 2.9205 1 5284 10134 3523 3607 6222 6222 -0.10069823909338993 DASKVKAEGP 10 Unmodified _DASKVKAEGP_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;FLNA|p.G881S|1|0.22|ENSG00000196924|chrX:154362257-154362257|C/T|missense_variant;nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2663269042969 2 501.266739 1000.51892 NaN NaN NaN NaN NaN NaN NaN 52.285 1 52.285 51.785 52.785 0 0 0 0 0.49971 1 28931 28931 26.268 7.0112 1 5285 16209;9884;15895;4073 3524 3608 6223 6223 0.01868562200957058 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2688598632812 2 483.26875 964.522947 0.0091585 4.426E-06 -0.17587 -8.4991E-05 -0.16671 -8.0565E-05 483.26862963762284 52.232 0.79655 52.232 51.976 52.773 0 111 35 6 0 0 0 0.014417 4 28803 28803;28915;29018;29155 69.105 19.172 1 744160000 5286 1052 3525 3609 6224;6225;6226;6227 6224 0.03926651694678185 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.269287109375 2 483.26875 964.522947 0.53838 0.00026018 -0.9098 -0.00043968 -0.37142 -0.0001795 483.2682227020758 52.681 0.71804 52.247 52.023 52.741 -0.43381 126 36 5 0 0 0 0.012668 3 28394 28394;28496;28600 72.968 23.035 1 694120000 5287 1052 3525 3609 6228;6229;6230 6228 0.03926651694678185 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.531982421875 1 965.530224 964.522947 0.3321 0.00032065 3.8907 0.0037566 4.2228 0.0040772 965.5349855345046 52.701 0.2975 52.251 52.086 52.383 -0.44918 24 14 2 0 0 0 0.036857 2 28437 28437;28543 51.63 9.7902 1 4849000 5288 1052 3525 3609 6231;6232 6231 0.03926651694678185 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.26806640625 2 483.26875 964.522947 0.78947 0.00038153 -0.36483 -0.00017631 0.42464 0.00020522 483.2684862896621 52.33 0.43941 52.271 52.087 52.526 -0.058918 63 21 4 0 0 0 0.012668 2 28301 28301;28399 72.968 23.035 1 44880000 5289 1052 3525 3609 6233;6234 6233 0.03926651694678185 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.53271484375 1 965.530224 964.522947 0.87094 0.00084092 -0.35661 -0.00034432 0.51433 0.0004966 965.5297401729988 59.313 0.8204 53.239 52.734 53.555 -6.0745 93 44 3 0 0 0 0.015688 3 38264 38001;38134;38264 67.838 25.999 1 193810000 5290 1052 3525 3609 6235;6236;6237 6237 0.03926651694678185 DASKVVTVF 9 Unmodified _DASKVVTVF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2690734863281 2 483.26875 964.522947 1.066 0.00051518 -0.76743 -0.00037087 0.29861 0.00014431 483.268203255953 59.343 0.94191 53.228 52.662 53.604 -6.1147 185 51 5 0 0 0 0.012668 2 38015 38015;38147 72.968 23.035 1 2988599999.9999995 5291 1052 3525 3609 6238;6239 6238 0.03926651694678185 DASLATQCI 9 Unmodified _DASLATQCI_ 0 0 0 REV__ENSG00000152193|ENST00000282003|OBI1 REV__ENSG00000152193|ENST00000282003|OBI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2203979492188 2 461.220943 920.427332 0.54898 0.0002532 -1.9913 -0.00091842 -1.4423 -0.00066522 461.22022705672845 39.903 0.30926 39.903 39.72 40.03 0 17 15 2 0 0 0 0.49272 1 21420 21420 7.9102 0.62092 1 909350 + 5292 21105 3526 3610 6240 6240 -0.036064444878888935 DASLGNLF 8 Unmodified _DASLGNLF_ 0 0 0 ENSG00000196937|ENST00000359943|FAM3C ENSG00000196937|ENST00000359943|FAM3C ENSG00000196937|ENST00000359943|FAM3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4143676757812 1 836.414859 835.407583 0.14301 0.00011962 0.39169 0.00032762 0.5347 0.00044723 836.4150701916932 74.916 0.37187 74.916 74.739 75.111 0 35 19 3 0 0 0 0.056236 2 41653 41653;41752 131.3 49.434 1 2349800 5293 9886 3527 3611 6241;6242 6241 -0.016704524363262863 DASLGNLF 8 Unmodified _DASLGNLF_ 0 0 0 ENSG00000196937|ENST00000359943|FAM3C ENSG00000196937|ENST00000359943|FAM3C ENSG00000196937|ENST00000359943|FAM3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7110900878906 2 418.711068 835.407583 NaN NaN NaN NaN NaN NaN NaN 75.071 1 75.071 74.571 75.571 0 0 0 0 0.95607 1 41764 41764 9.3474 3.587 1 5294 9886 3527 3611 6243 6243 -0.016704524363262863 DASMSIYQF 9 Oxidation (M) _DASM(Oxidation (M))SIYQF_ DASM(1)SIYQF DASM(42)SIYQF 0 0 1 ENSG00000168496|ENST00000305885|FEN1 ENSG00000168496|ENST00000305885|FEN1 ENSG00000168496|ENST00000305885|FEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2301635742188 2 539.231507 1076.44846 0.4414 0.00023802 -0.94417 -0.00050913 -0.50277 -0.00027111 539.230561421976 58.014 0.30534 58.014 57.772 58.078 0 20 12 2 0 0 0 0.06187 1 32270 32270 42.095 29.563 1 3370000 5295 7771 3528 3612 6244 6244 1325 -0.0867047917902255 DASNIFYI 8 Unmodified _DASNIFYI_ 0 0 0 REV__ENSG00000215262|ENST00000399881|KCNU1 REV__ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.45654296875 1 942.456724 941.449448 -0.19319 -0.00018207 0.53583 0.000505 0.34264 0.00032293 942.4569447481945 65.103 0.23344 65.103 65.013 65.247 0 16 9 2 0 0 0 0.80311 1 36391 36391 4.756 0.42677 1 916060 + 5296 24339 3529 3613 6245 6245 -0.023618967478228114 DASNQISVY 9 Unmodified _DASNQISVY_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7351684570312 2 498.735271 995.45599 NaN NaN NaN NaN NaN NaN NaN 40.952 1 40.952 40.452 41.452 0 0 0 0 0.39043 1 22050 22050 20.454 2.3186 1 5297 1017 3530 3614 6246 6246 -0.04192003587104409 DASPVFGMDC 10 Unmodified _DASPVFGMDC_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.75 2 521.204435 1040.39432 0.41034 0.00021387 -1.8033 -0.00093989 -1.393 -0.00072602 521.2040470094732 63.182 0.14996 63.182 63.122 63.272 0 11 5 3 0 0 0 0.23634 1 35222 35222 6.7232 1.4925 1 704720 + 5298 22087 3531 3615 6247 6247 -0.1242639460222108 DASPVQAVF 9 Unmodified _DASPVQAVF_ 0 0 0 ENST00000465134.5_1_2:74650023-74652276:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54 ENST00000465134.5_1_2:74650023-74652276:+|nuORF ENST00000465134.5_1_2:74650023-74652276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2373657226562 2 467.23745 932.460347 0.41201 0.00019251 -0.23421 -0.00010943 0.1778 8.3074E-05 467.2373815969886 62.19 0.55684 62.19 61.929 62.486 0 66 33 3 0 0 0 0.047196 2 34688 34587;34688 46.021 17.534 1 9053800 5299 308 3532 3616 6248;6249 6249 -0.008584943735286288 DASPVQAVF 9 Unmodified _DASPVQAVF_ 0 0 0 ENST00000465134.5_1_2:74650023-74652276:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54 ENST00000465134.5_1_2:74650023-74652276:+|nuORF ENST00000465134.5_1_2:74650023-74652276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4693603515625 1 933.467623 932.460347 0.28614 0.0002671 0.030257 2.8244E-05 0.3164 0.00029535 933.4674623489035 62.192 0.41714 62.192 61.974 62.391 0 37 23 2 0 0 0 0.0085164 1 34711 34711 99.799 53.778 1 3359900 5300 308 3532 3616 6250 6250 -0.008584943735286288 DASPVQAVF 9 Unmodified _DASPVQAVF_ 0 0 0 ENST00000465134.5_1_2:74650023-74652276:+|nuORF;nc|ENSG00000005448|Q9H977-3|WDR54;ENSG00000005448|ENST00000348227|WDR54;nc|ENSG00000005448|Q9H977-4|WDR54 ENST00000465134.5_1_2:74650023-74652276:+|nuORF ENST00000465134.5_1_2:74650023-74652276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2368774414062 2 467.23745 932.460347 1.0397 0.00048581 0.22101 0.00010326 1.2608 0.00058907 467.23724331510994 71.036 0.27924 64.861 64.663 64.943 -6.1757 20 13 2 0 0 0 0.022193 1 46374 46374 61.357 32.871 1 21205000 5301 308 3532 3616 6251 6251 -0.008584943735286288 DASRDLFTY 9 Unmodified _DASRDLFTY_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2566528320312 2 544.256371 1086.49819 0.37546 0.00020435 0.21109 0.00011489 0.58655 0.00031924 544.2566632074171 52.852 0.20733 52.852 52.75 52.958 0 19 9 3 0 0 0 0.024189 1 29266 29266 59.368 23.241 1 3982000 5302 3575 3533 3617 6252 6252 -0.04160028178716857 DASVLKVAF 9 Unmodified _DASVLKVAF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2027254-2027428:+|nuORF ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2727966308594 2 475.271293 948.528032 0.19156 9.1042E-05 0.86926 0.00041314 1.0608 0.00050418 475.2717019138433 65.561 0.32401 65.561 65.394 65.718 0 19 12 2 0 0 0 0.14602 1 36577 36577 28.487 11.545 1 594990 5303 9188 3534 3618 6253 6253 0.05170955557275647 DASVLKVAF 9 Unmodified _DASVLKVAF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2027254-2027428:+|nuORF ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.270751953125 2 475.271293 948.528032 0.17648 8.3874E-05 0.1845 8.7689E-05 0.36098 0.00017156 475.2713418132422 66.02 0.28201 65.537 65.386 65.668 -0.48323 27 12 4 0 0 0 0.013041 1 36020 36020 71.922 33.948 1 6951600 5304 9188 3534 3618 6254 6254 0.05170955557275647 DASVLKVAF 9 Unmodified _DASVLKVAF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3;ENST00000564171.1_1_16:2027254-2027428:+|nuORF ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 475.271293 948.528032 1.1665 0.00055439 -0.32588 -0.00015488 0.8406 0.00039951 475.2711482286918 71.355 0.33805 65.179 65.007 65.345 -6.1757 -0.24636 -0.00047975 NaN 71.922 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 21279000 5305 9188 3534 3618 0.05170955557275647 DASWETRFYW 10 Unmodified _DASWETRFYW_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2;ENSG00000204147|ENST00000647317|ASAH2B;nc|ENSG00000204147|P0C7U1|ASAH2B nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.7996826171875 2 680.801477 1359.5884 0.343 0.00023352 -2.4749 -0.0016849 -2.1319 -0.0014514 680.7995380256943 76.572 0.37894 76.622 76.469 76.848 0.049904 28 15 2 0 0 0 0.60623 1 42239 42239 10.824 5.0921 1 4845400 5306 9675 3535 3619 6255 6255 -0.07700978850289175 DATEIIFEM 9 Oxidation (M) _DATEIIFEM(Oxidation (M))_ DATEIIFEM(1) DATEIIFEM(42) 0 0 1 nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;nc|ENSG00000135164|Q9Y222-4|DMTF1;nc|ENSG00000135164|Q9Y222-2|DMTF1;nc|ENSG00000135164|Q9Y222-3|DMTF1 nc|ENSG00000135164|Q9Y222-5|DMTF1 nc|ENSG00000135164|Q9Y222-5|DMTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.747314453125 2 542.74699 1083.47943 0.1926 0.00010454 -0.21635 -0.00011742 -0.023746 -1.2888E-05 542.7468372877372 64.195 0.29868 64.195 64.046 64.345 0 14 12 2 0 0 0 0.06187 1 35787 35787 42.095 25.152 1 964750 5307 4677 3536 3620 6256 6256 847 -0.058973258647938565 DATFSAVY 8 Unmodified _DATFSAVY_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.3985595703125 1 873.398875 872.391599 0.37002 0.00032317 -0.14384 -0.00012563 0.22618 0.00019754 873.3989687813926 51.552 0.36023 51.552 51.393 51.753 0 37 16 3 0 0 0 0.21786 2 28540 28426;28540 67.035 32.848 1 7494300 5308 6931 3537 3621 6257;6258 6258 -0.04970158673233982 DATIVVKSY 9 Unmodified _DATIVVKSY_ 0 0 0 ENSG00000130762|ENST00000378378|ARHGEF16 ENSG00000130762|ENST00000378378|ARHGEF16 ENSG00000130762|ENST00000378378|ARHGEF16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2738342285156 2 498.274032 994.533512 0.50149 0.00024988 -1.2261 -0.00061095 -0.72463 -0.00036107 498.2734114638504 38.397 0.21796 38.397 38.297 38.515 0 31 19 2 0 0 0 0.0086209 1 20475 20475 89.401 37.771 1 8834100 5309 4254 3538 3622 6259 6259 0.036026343490902946 DATIVVKSY 9 Unmodified _DATIVVKSY_ 0 0 0 ENSG00000130762|ENST00000378378|ARHGEF16 ENSG00000130762|ENST00000378378|ARHGEF16 ENSG00000130762|ENST00000378378|ARHGEF16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2727355957031 2 498.274032 994.533512 0.68571 0.00034167 -0.65237 -0.00032506 0.033335 1.661E-05 498.2733219589535 44.371 0.33797 39.519 39.294 39.632 -4.852 47 24 3 0 0 0 0.040683 1 27009 27009 49.554 28.017 1 17417000 5310 4254 3538 3622 6260 6260 0.036026343490902946 DATNVAAAF 9 Unmodified _DATNVAAAF_ 0 0 0 ENSG00000123595|ENST00000464506|RAB9A ENSG00000123595|ENST00000464506|RAB9A ENSG00000123595|ENST00000464506|RAB9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2140197753906 2 440.213975 878.413397 0.29363 0.00012926 -0.31072 -0.00013678 -0.017093 -7.5247E-06 440.2138979877743 50.461 0.34364 50.461 50.259 50.603 0 19 15 2 0 0 0 0.0090948 1 27816 27816 85.272 45.315 1 1819100 5311 3720 3539 3623 6261 6261 -0.03067353924677718 DAVATYYLY 9 Unmodified _DAVATYYLY_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENST00000539215.5_1_12:133249167-133250211:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7579956054688 2 539.758215 1077.50188 0.30055 0.00016222 -0.19834 -0.00010705 0.10221 5.517E-05 539.7583131593484 66.022 0.29456 66.022 65.88 66.175 0 24 14 2 0 0 0 0.14602 1 36799 36799 28.487 15.444 1 3122800 5312 8655 3540 3624 6262 6262 -0.033773584048503835 DAVDVTQDY 9 Unmodified _DAVDVTQDY_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000545220.1_1_12:7343495-7354840:+|nuORF;ENST00000539304.1_1_12:7344181-7354515:+|nuORF nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2241821289062 2 513.224736 1024.43492 0.53775 0.00027599 -0.078265 -4.0168E-05 0.45949 0.00023582 513.2245838001227 38.56 0.35854 38.56 38.389 38.747 0 45 18 3 0 0 0 0.047196 2 20556 20556;20663 46.021 7.9221 1 12668000 5313 5136 3541 3625 6263;6264 6263 -0.07632013686588834 DAVDVTQDY 9 Unmodified _DAVDVTQDY_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;ENST00000545220.1_1_12:7343495-7354840:+|nuORF;ENST00000539304.1_1_12:7344181-7354515:+|nuORF nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MSMS AL20221201_MKP_PDAC_01 4 513.2251586914062 2 513.224736 1024.43492 NaN NaN NaN NaN NaN NaN NaN 46.599 1 41.518 41.018 42.018 -5.0805 0 0 0 0.12337 1 28825 28825 39.957 18.211 1 5314 5136 3541 3625 6265 6265 -0.07632013686588834 DAVFIQNDF 9 Unmodified _DAVFIQNDF_ 0 0 0 REV__ENSG00000075673|ENST00000381946|ATP12A REV__ENSG00000075673|ENST00000381946|ATP12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7525024414062 2 534.753464 1067.49238 -0.038095 -2.0371E-05 -0.5777 -0.00030893 -0.61579 -0.0003293 534.7531486193552 54.605 0.31242 54.139 53.948 54.261 -0.46664 27 15 3 0 0 0 0.14 1 29630 29630 29.082 9.8246 1 5130000 + 5315 17574 3542 3626 6266 6266 -0.03867126690374789 DAVFYSKNKYY 11 Unmodified _DAVFYSKNKYY_ 0 0 0 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.33984375 2 699.340435 1396.66632 0.53517 0.00037427 -1.1348 -0.00079363 -0.59966 -0.00041937 699.339517019229 48.17 0.23567 48.132 47.988 48.224 -0.038643 36 11 4 0 0 0 0.58219 1 25943 25943 12.241 4.0851 1 8137500 5316 10848 3543 3627 6267 6267 -0.016149659848906595 DAVHAILAY 9 Unmodified _DAVHAILAY_ 0 0 0 nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38 nc|nan|Q5JPI3-2|C3orf38 nc|nan|Q5JPI3-2|C3orf38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7613525390625 2 486.761092 971.507631 0.60246 0.00029326 1.3552 0.00065967 1.9577 0.00095293 486.7611280808339 60.571 0.65217 60.571 60.301 60.953 0 78 28 4 0 0 0 0.10734 1 33805 33805 32.305 5.4218 1 43120000 5317 8799 3544 3628 6268 6268 0.02073784897470432 DAVHAILAY 9 Unmodified _DAVHAILAY_ 0 0 0 nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38 nc|nan|Q5JPI3-2|C3orf38 nc|nan|Q5JPI3-2|C3orf38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7611694335938 2 486.761092 971.507631 0.6294 0.00030637 0.86852 0.00042276 1.4979 0.00072913 486.7612516155987 67.684 0.58139 61.509 61.255 61.837 -6.1757 94 33 4 0 0 0 0.10734 1 44123 44123 32.305 5.4218 1 137440000 5318 8799 3544 3628 6269 6269 0.02073784897470432 DAVHDITVAY 10 Unmodified _DAVHDITVAY_ 0 0 0 ENSG00000172954|ENST00000379509|LCLAT1;nc|ENSG00000172954|Q6UWP7|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 ENSG00000172954|ENST00000379509|LCLAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2709350585938 2 552.272021 1102.52949 0.18342 0.0001013 -1.6702 -0.00092242 -1.4868 -0.00082112 552.2712737772665 48.975 0.23407 48.975 48.828 49.062 0 27 11 3 0 0 0 0.13391 1 26898 26898 41.84 16.849 1 6444100 5319 8274 3545 3629 6270 6270 -0.0176745514461345 DAVISTETV 9 Unmodified _DAVISTETV_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000482902.5_1_X:153061851-153062064:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7396545410156 2 467.740022 933.465492 NaN NaN NaN NaN NaN NaN NaN 62.401 1 62.401 61.901 62.901 0 0 0 0 0.6306 1 34804 34804 11.64 1.4569 1 5320 8928 3546 3630 6271 6271 -0.003902353015519111 DAVKCLSEF 9 Carbamidomethyl (C) _DAVKC(Carbamidomethyl (C))LSEF_ DAVKC(1)LSEF DAVKC(62)LSEF 0 1 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.755615234375 2 534.755149 1067.49575 0.64187 0.00034324 -0.20079 -0.00010738 0.44107 0.00023587 534.7552593733274 55.814 0.48709 49.893 49.621 50.108 -5.9211 81 28 4 0 0 0 0.021948 2 35545 35413;35545 61.602 29.296 1 79335000 5321 944;3759 3547 3631 6272;6273 6273 83 -0.035301999080502355 DAVKDLGVF 9 Unmodified _DAVKDLGVF_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2614440917969 2 482.260925 962.507297 0.41698 0.00020109 0.90929 0.00043852 1.3263 0.00063961 482.2613747014888 58.144 0.27812 58.144 58.012 58.29 0 24 10 3 0 0 0 0.098164 1 32346 32346 33.445 14.188 1 2980600 5322 2711 3548 3632 6274 6274 0.024543651776298248 DAVNLALLM 9 Oxidation (M) _DAVNLALLM(Oxidation (M))_ DAVNLALLM(1) DAVNLALLM(44) 0 0 1 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2621765136719 2 488.26261 974.510668 0.61611 0.00030082 -1.2209 -0.00059614 -0.60483 -0.00029532 488.26218045966493 73.283 0.41705 73.283 73.052 73.469 0 58 21 4 0 0 0 0.05447 1 40824 40824 43.858 16.975 1 9486000 5323 6396 3549 3633 6275 6275 1124 0.022392919599724337 DAVNLALLM 9 Oxidation (M) _DAVNLALLM(Oxidation (M))_ DAVNLALLM(1) DAVNLALLM(75) 0 0 1 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.26220703125 2 488.26261 974.510668 0.84635 0.00041324 -1.2536 -0.00061207 -0.40722 -0.00019883 488.2620460610552 73.804 0.44842 73.328 73.144 73.593 -0.47588 55 21 3 0 0 0 0.011968 2 40361 40361;40469 74.929 36.955 1 7649700 5324 6396 3549 3633 6276;6277 6276 1124 0.022392919599724337 DAVNLALLM 9 Oxidation (M) _DAVNLALLM(Oxidation (M))_ DAVNLALLM(1) DAVNLALLM(65) 0 0 1 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.263916015625 2 488.26261 974.510668 0.83663 0.00040849 0.61358 0.00029959 1.4502 0.00070808 488.2628692432095 81.799 0.42072 75.624 75.462 75.883 -6.1757 40 23 2 0 0 0 0.018301 2 53672 53672;53793 65.235 19.214 1 19805000 5325 6396 3549 3633 6278;6279 6278 1124 0.022392919599724337 DAVNLALLM 9 Unmodified _DAVNLALLM_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2652587890625 2 480.265153 958.515753 1.2958 0.00062234 -0.93292 -0.00044805 0.3629 0.00017429 480.2647649215991 100.27 0.19351 94.093 93.978 94.171 -6.1757 28 11 3 0 0 0 0.018301 1 66984 66984 65.235 10.461 1 62158000 5326 6396 3549 3634 6280 6280 0.03483595822581265 DAVNTLLAM 9 Unmodified _DAVNTLLAM_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.247802734375 2 474.24696 946.479368 1.1296 0.00053571 0.40216 0.00019072 1.5318 0.00072644 474.24709911291075 86.156 0.29405 79.98 79.76 80.054 -6.1757 19 15 2 0 0 0 0.013323 1 56756 56756 71.134 9.7761 1 9266300 5327 5021 3550 3635 6281 6281 0.003987189258737089 DAVPEYSLWFE 11 Unmodified _DAVPEYSLWFE_ 0 0 0 ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 678.3107299804688 2 678.311343 1354.60813 NaN NaN NaN NaN NaN NaN NaN 50.441 1 50.441 49.941 50.941 0 0 0 0 0.93669 1 27805 27805 4.897 3.4151 1 5328 4965 3551 3636 6282 6282 -0.054986476302246956 DAVREIRKY 9 Unmodified _DAVREIRKY_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8838806152344 3 383.884012 1148.63021 -0.46993 -0.0001804 0.97583 0.00037461 0.5059 0.00019421 383.8843163810571 20.196 0.20055 20.196 20.081 20.281 0 43 13 4 0 0 0 0.32235 1 10118 10118 20.581 10.43 1 3479500 5329 9418 3552 3637 6283 6283 0.061836216289066215 DAVREIRKY 9 Unmodified _DAVREIRKY_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8843383789062 3 383.884012 1148.63021 0.91989 0.00035313 0.099552 3.8216E-05 1.0194 0.00039135 383.88395609985787 22.528 0.3447 19.75 19.554 19.899 -2.7784 49 19 3 0 0 0 0.01958 2 12072 12072;12173 67.081 48.708 1 22977000 5330 9418 3552 3637 6284;6285 6284 0.061836216289066215 DAVRELDNLQY 11 Unmodified _DAVRELDNLQY_ 0 0 0 ENSG00000135090|ENST00000392533|TAOK3;ENST00000536584.1_1_12:118639070-118651824:-|nuORF;nc|ENSG00000160551|Q7L7X3-2|TAOK1;ENST00000577583.1_1_17:27807410-27838022:+|nuORF;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000135090|ENST00000392533|TAOK3;ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.3303833007812 2 668.330598 1334.64664 0.05815 3.8864E-05 -0.28931 -0.00019336 -0.23116 -0.00015449 668.3303639675971 52.739 0.26323 52.739 52.573 52.836 0 23 11 3 0 0 0 0.029924 1 29181 29181 55.249 35.992 1 5159000 5331 6045;16263;4669 3553 3638 6286 6286 -0.007293419956795333 DAVREVRKY 9 Unmodified _DAVREVRKY_ 0 0 0 nc|ENSG00000075790|Q9UHQ4-2|BCAP29;ENST00000486326.5_1_7:107220736-107234551:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29 nc|ENSG00000075790|Q9UHQ4-2|BCAP29 nc|ENSG00000075790|Q9UHQ4-2|BCAP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2126159667969 3 379.212128 1134.61456 1.0645 0.00040367 -0.26774 -0.00010153 0.79676 0.00030214 379.2120994921564 18.005 0.18487 15.406 15.295 15.48 -2.599 17 11 2 0 0 0 0.11412 1 9468 9468 31.636 15.487 1 1870400 5332 16052 3554 3639 6287 6287 0.052633351118629434 DAVRTKMVY 9 Unmodified _DAVRTKMVY_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5276184082031 3 361.526948 1081.55902 -0.69299 -0.00025054 1.006 0.00036368 0.31297 0.00011315 361.5273396899166 27.711 0.25099 27.711 27.574 27.825 0 26 11 3 0 0 0 0.15471 1 14270 14270 20.581 12.425 1 6317100 5333 5983 3555 3640 6288 6288 0.021497855998632076 DAVRTKMVY 9 Unmodified _DAVRTKMVY_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7877197265625 2 541.786784 1081.55902 -0.54802 -0.00029691 0.4385 0.00023757 -0.10952 -5.9339E-05 541.7874057151366 27.704 0.18721 27.704 27.596 27.783 0 15 8 2 0 0 0 0.091924 1 14278 14278 34.932 0.82963 1 2864500 5334 5983 3555 3640 6289 6289 0.021497855998632076 DAVRTKMVY 9 Unmodified _DAVRTKMVY_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5278930664062 3 361.526948 1081.55902 1.5647 0.00056568 -0.52125 -0.00018845 1.0434 0.00037724 361.5267849231886 31.069 0.43316 27.386 27.135 27.568 -3.6826 59 20 4 0 0 0 0.062454 2 17472 17472;17585 39.213 19.956 1 389570000 5335 5983 3555 3640 6290;6291 6290 0.021497855998632076 DAVRTKMVY 9 Unmodified _DAVRTKMVY_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7892456054688 2 541.786784 1081.55902 0.76384 0.00041384 -0.45266 -0.00024524 0.31118 0.00016859 541.7865831942421 31.018 0.40175 27.521 27.321 27.723 -3.497 46 18 3 0 0 0 0.015688 2 17475 17475;17587 67.838 39.351 1 181350000 5336 5983 3555 3640 6292;6293 6292 0.021497855998632076 DAVRTKMVY 9 Oxidation (M) _DAVRTKM(Oxidation (M))VY_ DAVRTKM(1)VY DAVRTKM(46)VY 0 0 1 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1897888183594 3 366.858586 1097.55393 1.8074 0.00066308 -1.0502 -0.00038528 0.75723 0.0002778 366.8582742657461 21.009 0.54084 18.316 18.036 18.577 -2.693 116 31 5 0 0 0 0.047714 1 11211 11211 45.74 29.591 1 171810000 5337 5983 3555 3641 6294 6294 1067 0.009054817372316393 DAVRTKMVY 9 Oxidation (M) _DAVRTKM(Oxidation (M))VY_ DAVRTKM(1)VY DAVRTKM(46)VY 0 0 1 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.78466796875 2 549.784241 1097.55393 1.1312 0.0006219 -0.84154 -0.00046266 0.28964 0.00015924 549.7839276887604 21.03 0.45299 18.337 18.11 18.563 -2.693 80 25 4 0 0 0 0.047714 1 11227 11227 45.74 23.993 1 54550000 5338 5983 3555 3641 6295 6295 1067 0.009054817372316393 DAVRTVEEF 9 Unmodified _DAVRTVEEF_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2622680664062 2 533.264196 1064.51384 0.11899 6.3455E-05 -0.34393 -0.0001834 -0.22493 -0.00011995 533.2638844366211 43.68 0.21884 43.68 43.583 43.802 0 25 10 3 0 0 0 0.033587 1 23714 23714 53.404 24.322 1 125890000 5339 4672;15073 3556 3642 6296 6296 -0.015837416616705013 DAVRTVEEF 9 Unmodified _DAVRTVEEF_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENSG00000135114|ENST00000257570|OASL;ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.265380859375 2 533.264196 1064.51384 1.0817 0.00057681 0.58519 0.00031206 1.6669 0.00088887 533.2644103337204 50.289 0.5172 44.75 44.518 45.036 -5.5391 96 33 4 0 0 0 0.076472 1 31459 31459 38.615 14.594 1 167620000 5340 4672;15073 3556 3642 6297 6297 -0.015837416616705013 DAVSCVPLSL 10 Unmodified _DAVSCVPLSL_ 0 0 0 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2610168457031 2 502.260068 1002.50558 0.40421 0.00020302 -0.3827 -0.00019221 0.021517 1.0807E-05 502.2600904538879 69.713 0.3091 69.713 69.578 69.887 0 26 14 2 0 0 0 0.66569 1 38918 38918 6.7232 0 1 820280 + 5341 29716 3557 3643 6298 6298 0.00442988097347552 DAVSVKIVI 9 Unmodified _DAVSVKIVI_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2956848144531 2 472.294768 942.574983 0.70038 0.00033078 0.097418 4.601E-05 0.79779 0.00037679 472.29470137757943 53.85 0.2631 53.85 53.728 53.991 0 18 11 2 0 0 0 0.022193 1 29888 29888 61.357 19.518 1 2750700 + 5342 22625 3558 3644 6299 6299 0.10139815108414041 DAVTDDERCID 11 Unmodified _DAVTDDERCID_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000510379.1_1_4:148653338-148778808:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2612915039062 2 626.261524 1250.5085 0.4399 0.00027549 0.30027 0.00018805 0.74018 0.00046354 626.2617371233349 66.828 0.42188 66.828 66.594 67.016 0 61 19 4 0 0 0 0.66428 1 37180 37180 7.609 1.4032 1 15078000 5343 33 3559 3645 6300 6300 -0.10673833306464076 DAVTDDERCID 11 Unmodified _DAVTDDERCID_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000510379.1_1_4:148653338-148778808:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.2625732421875 2 626.261524 1250.5085 0.33685 0.00021096 1.2166 0.0007619 1.5534 0.00097286 626.2623012635762 67.414 0.44664 66.932 66.695 67.142 -0.48219 66 19 5 0 0 0 0.35681 1 36854 36854 23.79 5.4167 1 19977000 5344 33 3559 3645 6301 6301 -0.10673833306464076 DAVTDDERCID 11 Unmodified _DAVTDDERCID_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000510379.1_1_4:148653338-148778808:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 626.261524 1250.5085 0.8499 0.00053226 -0.44876 -0.00028104 0.40113 0.00025121 626.2612084928094 66.876 0.19131 66.894 66.837 67.028 0.018028 0.0091307 -0.0014396 NaN 23.79 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1104300 5345 33 3559 3645 -0.10673833306464076 DAVTFITY 8 Unmodified _DAVTFITY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.4644775390625 1 929.461475 928.454199 0.40584 0.00037721 0.40939 0.00038051 0.81523 0.00075772 929.4622856769547 69.47 0.28348 69.47 69.353 69.636 0 21 12 2 0 0 0 0.63229 1 38699 38699 23.148 9.6405 1 658330 5346 9907 3560 3646 6302 6302 -0.012890126050592698 DAVTFWAQSI 10 Unmodified _DAVTFWAQSI_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2832641601562 2 569.282389 1136.55022 0.68546 0.00039022 0.26523 0.00015099 0.95069 0.00054121 569.2823009187368 56.83 0.2374 56.762 56.658 56.895 -0.068737 19 11 2 0 0 0 0.16361 1 30920 30920 38.176 9.094 1 3115200 5347 9799 3561 3647 6303 6303 -0.012588647649408813 DAVTFWAQSI 10 Unmodified _DAVTFWAQSI_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 569.282389 1136.55022 0.67371 0.00038353 1.0151 0.00057788 1.6888 0.00096141 569.2827793220976 57.215 0.2363 56.725 56.622 56.858 -0.48974 -0.018419 0.00025713 NaN 38.176 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1758100 5348 9799 3561 3647 -0.012588647649408813 DAVVSQVL 8 Unmodified _DAVVSQVL_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4615478515625 1 830.46181 829.454533 0.39517 0.00032817 0.26573 0.00022068 0.6609 0.00054885 830.4619132625269 53.85 0.38552 53.85 53.685 54.07 0 55 17 4 0 0 0 0.078546 2 29817 29817;29921 112.59 23.166 1 94152000 5349 4247 3562 3648 6304;6305 6304 0.03298407114800739 DAVVSQVL 8 Unmodified _DAVVSQVL_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7347717285156 2 415.734543 829.454533 0.40179 0.00016704 0.37965 0.00015783 0.78144 0.00032487 415.73463703135434 53.844 0.42651 53.844 53.685 54.111 0 62 19 4 0 0 0 0.31612 1 29824 29824 53.576 3.9067 1 59270000 5350 4247 3562 3648 6306 6306 0.03298407114800739 DAVVSQVL 8 Unmodified _DAVVSQVL_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.4623413085938 1 830.46181 829.454533 0.8367 0.00069485 -0.033535 -2.785E-05 0.80317 0.000667 830.4617013984337 63.194 0.55477 57.018 56.737 57.292 -6.1757 73 30 3 0 0 0 0.098639 4 40807 40677;40737;40807;40937 100.37 18.758 1 92001000 5351 4247 3562 3648 6307;6308;6309;6310 6309 0.03298407114800739 DAVVSQVL 8 Unmodified _DAVVSQVL_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.73486328125 2 415.734543 829.454533 1.0217 0.00042474 0.28278 0.00011756 1.3044 0.0005423 415.73455810612916 63.159 0.63919 56.983 56.653 57.292 -6.1757 81 34 3 0 0 0 0.31612 2 40956 40693;40956 53.576 6.6547 1 160080000 5352 4247 3562 3648 6311;6312 6312 0.03298407114800739 DAVYHMVY 8 Oxidation (M) _DAVYHM(Oxidation (M))VY_ DAVYHM(1)VY DAVYHM(57)VY 0 0 1 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2225036621094 2 507.223485 1012.43242 -0.37218 -0.00018878 -0.77322 -0.0003922 -1.1454 -0.00058097 507.2232606802124 33.084 0.41341 33.084 32.851 33.264 0 66 20 4 0 0 0 0.28922 2 17237 17237;17344 56.541 40.694 1 37614000 5353 4865 3563 3649 6313;6314 6313 882 -0.07330140625253989 DAVYHMVY 8 Oxidation (M) _DAVYHM(Oxidation (M))VY_ DAVYHM(1)VY DAVYHM(57)VY 0 0 1 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2234497070312 2 507.223485 1012.43242 0.79586 0.00040368 -1.3549 -0.00068724 -0.55905 -0.00028356 507.2228224343199 38.18 0.47633 33.811 33.597 34.074 -4.3689 74 28 3 0 0 0 0.28922 2 22466 22466;22599 56.541 34.831 1 42322000 5354 4865 3563 3649 6315;6316 6315 882 -0.07330140625253989 DAVYHMVY 8 Unmodified _DAVYHMVY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2261657714844 2 499.226028 996.437503 1.2933 0.00064564 -0.86581 -0.00043224 0.42747 0.00021341 499.22551336632085 53.608 0.38374 47.804 47.642 48.025 -5.8042 58 23 3 0 0 0 0.15234 2 33868 33868;34006 86.121 46.164 1 84863000 5355 4865 3563 3650 6317;6318 6317 -0.06085836762645158 DAWDITIAY 9 Unmodified _DAWDITIAY_ 0 0 0 ENSG00000137634|ENST00000375478|NXPE4;nc|ENSG00000137634|Q6UWF7-2|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2557983398438 2 534.25584 1066.49713 0.23952 0.00012797 -1.366 -0.00072981 -1.1265 -0.00060184 534.2554491896394 66.872 0.25157 66.389 66.294 66.546 -0.48323 27 11 3 0 0 0 0.37804 1 36508 36508 13.508 4.9146 1 1040200 5356 4952 3564 3651 6319 6319 -0.03346242547627298 DAWEEAQVEF 10 Unmodified _DAWEEAQVEF_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2654418945312 2 612.264393 1222.51423 1.4194 0.00086906 0.8844 0.00054149 2.3038 0.0014105 612.2648227531122 79.391 0.30886 73.215 73.026 73.335 -6.1757 26 17 2 0 0 0 0.16361 1 52059 52059 38.176 23.337 1 10692000 5357 123 3565 3652 6320 6320 -0.08812366732468035 DAWFCRWF 8 Unmodified _DAWFCRWF_ 0 0 0 ENST00000571240.1_1_17:7942473-7945810:+|nuORF;nc|ENSG00000179593|O15296-2|ALOX15B;nc|ENSG00000179593|O15296-3|ALOX15B;nc|ENSG00000179593|O15296-4|ALOX15B;ENSG00000179593|ENST00000380183|ALOX15B ENST00000571240.1_1_17:7942473-7945810:+|nuORF ENST00000571240.1_1_17:7942473-7945810:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5001220703125 3 377.500733 1129.48037 NaN NaN NaN NaN NaN NaN NaN 44.95 1 44.95 44.45 45.45 0 0 0 0 0.97348 1 24480 24480 3.9444 2.038 1 5358 8845 3566 3653 6321 6321 -0.07919021914563018 DAWFEEKQQQF 11 Unmodified _DAWFEEKQQQF_ 0 0 0 nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2 nc|ENSG00000205302|O60749-2|SNX2 nc|ENSG00000205302|O60749-2|SNX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 728.330322265625 2 728.330598 1454.64664 -0.81718 -0.00059518 0.018865 1.374E-05 -0.79832 -0.00058144 728.3311428629922 55.499 0.24635 55.499 55.305 55.552 0 19 10 2 0 0 0 0.16515 1 30797 30797 34.932 29.635 1 2033100 5359 10358 3567 3654 6322 6322 -0.06249341995680879 DAWFEEKQQQF 11 Unmodified _DAWFEEKQQQF_ 0 0 0 nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2 nc|ENSG00000205302|O60749-2|SNX2 nc|ENSG00000205302|O60749-2|SNX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 728.3326416015625 2 728.330598 1454.64664 1.8389 0.0013393 -0.50546 -0.00036814 1.3334 0.00097116 728.8311401039635 62.533 0.29835 56.357 56.265 56.563 -6.1757 26 14 3 0 0 0 7.4113E-15 1 40404 40404 132.38 93.765 1 8031400 5360 10358 3567 3654 6323 6323 -0.06249341995680879 DAWIEHDVW 9 Unmodified _DAWIEHDVW_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1 nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.763671875 2 585.764363 1169.51417 0.27217 0.00015943 -1.2377 -0.00072501 -0.96554 -0.00056558 585.7638643910184 67.612 0.47068 67.612 67.317 67.788 0 67 21 5 0 0 0 0.0082485 2 37671 37671;37774 96.285 65.016 1 20694000 5361 2378 3568 3655 6324;6325 6324 -0.0638032194178777 DAWIEHDVW 9 Unmodified _DAWIEHDVW_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1 nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7616577148438 2 585.764363 1169.51417 0.50902 0.00029817 -1.6745 -0.00098088 -1.1655 -0.00068271 585.7626292760178 68.134 0.37298 67.651 67.475 67.848 -0.48218 57 17 5 0 0 0 0.07916 2 37306 37205;37306 37.974 24.068 1 9605600 5362 2378 3568 3655 6326;6327 6327 -0.0638032194178777 DAWIEHDVW 9 Unmodified _DAWIEHDVW_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1 nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.764892578125 2 585.764363 1169.51417 0.9147 0.0005358 0.56908 0.00033335 1.4838 0.00086914 585.7642448367168 74.271 0.89993 68.095 67.724 68.624 -6.1757 81 46 3 0 0 0 0.0082485 4 48678 48444;48559;48678;48826 108 76.729 1 31380000 5363 2378 3568 3655 6328;6329;6330;6331 6330 -0.0638032194178777 DAWIEHDVW 9 Unmodified _DAWIEHDVW_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1 nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.7630615234375 2 585.764363 1169.51417 0.73191 0.00042873 0.84061 0.0004924 1.5725 0.00092113 585.763769121704 75.869 0.86552 69.693 69.138 70.004 -6.1757 60 46 2 0 0 0 0.015445 3 49502 49502;49625;49748 68.081 40.244 1 15715000 5364 2378 3568 3655 6332;6333;6334 6332 -0.0638032194178777 DAWKQILAF 9 Unmodified _DAWKQILAF_ 0 0 0 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.298583984375 2 546.297842 1090.58113 NaN NaN NaN NaN NaN NaN NaN 84.97 1 84.469 83.969 84.969 -0.5015 0 0 0 0.53226 1 46494 46494 14.838 6.0929 1 5365 8686 3569 3656 6335 6335 0.03946333339968078 DAWKQILAF 9 Unmodified _DAWKQILAF_ 0 0 0 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.29736328125 2 546.297842 1090.58113 -0.15812 -8.6378E-05 0.5552 0.00030331 0.39709 0.00021693 546.2981466976114 84.537 0.28593 84.6 84.393 84.679 0.063171 16 12 2 0 0 0 0.0059585 1 46758 46758 114.65 62.381 1 22820000 5366 8686 3569 3656 6336 6336 0.03946333339968078 DAWKQILAF 9 Unmodified _DAWKQILAF_ 0 0 0 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2982177734375 2 546.297842 1090.58113 1.2092 0.00066059 -0.91287 -0.0004987 0.29634 0.00016189 546.2977414421608 98.406 0.44333 92.23 91.908 92.352 -6.1757 58 29 4 0 0 0 0.040683 1 65227 65227 49.554 26.818 1 149050000 5367 8686 3569 3656 6337 6337 0.03946333339968078 DAWKQLQTF 9 Unmodified _DAWKQLQTF_ 0 0 0 ENSG00000119673|ENST00000238651|ACOT2;ENSG00000184227|ENST00000311148|ACOT1;nc|ENSG00000119673|P49753-2|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 MSMS AL20221201_MKP_PDAC_01 4 568.7926635742188 2 568.790381 1135.56621 NaN NaN NaN NaN NaN NaN NaN 67.063 1 60.887 60.387 61.387 -6.1757 0 0 0 0.13463 1 43664 43664 41.84 23.705 1 5368 3451 3570 3657 6338 6338 0.003848414719413995 DAWRFWHKRAE 11 Unmodified _DAWRFWHKRAE_ 0 0 0 ENSG00000164654|ENST00000340080|MIOS;ENST00000493227.1_1_7:7622738-7646720:+|nuORF ENSG00000164654|ENST00000340080|MIOS ENSG00000164654|ENST00000340080|MIOS MSMS AL20221201_MKP_PDAC_01 4 751.3731689453125 2 751.376009 1500.73747 NaN NaN NaN NaN NaN NaN NaN 36.433 1 32.24 31.74 32.74 -4.1928 0 0 0 0.93224 1 21274 21274 5.7319 0.83484 1 5369 7223 3571 3658 6339 6339 0.007125915631377211 DAWRQPEDTW 10 Unmodified _DAWRQPEDTW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.2896118164062 2 652.288734 1302.56291 0.85815 0.00055976 0.101 6.5879E-05 0.95914 0.00062564 652.2891614948713 80.445 0.49175 79.953 79.709 80.201 -0.49247 67 19 5 0 0 0 0.60623 2 44092 43988;44092 10.824 2.0785 1 12855000 5370 8367 3572 3659 6340;6341 6341 -0.0762645337269987 DAWRQPEDTW 10 Unmodified _DAWRQPEDTW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.79052734375 2 652.288734 1302.56291 0.44641 0.00029119 -0.34054 -0.00022213 0.10587 6.9058E-05 652.288626897191 79.862 0.32336 79.92 79.746 80.07 0.057579 40 12 4 0 0 0 0.60623 2 44096 44096;44204 10.824 5.0921 1 13317000 5371 8367 3572 3659 6342;6343 6342 -0.0762645337269987 DAWVKKYDR 9 Unmodified _DAWVKKYDR_ 0 0 0 nc|ENSG00000154930|Q9NUB1-3|ACSS1;nc|ENSG00000154930|Q9NUB1-4|ACSS1;nc|ENSG00000154930|Q9NUB1-2|ACSS1;ENSG00000154930|ENST00000323482|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2089233398438 3 394.208495 1179.60366 -0.081832 -3.2259E-05 1.2381 0.00048806 1.1562 0.0004558 394.2089578427224 15.282 0.24651 15.288 15.206 15.452 0.0057774 29 13 3 0 0 0 0.36964 1 7609 7609 9.544 3.3096 1 4990700 5372 6357 3573 3660 6344 6344 0.021039327375547145 DAWVKKYDR 9 Unmodified _DAWVKKYDR_ 0 0 0 nc|ENSG00000154930|Q9NUB1-3|ACSS1;nc|ENSG00000154930|Q9NUB1-4|ACSS1;nc|ENSG00000154930|Q9NUB1-2|ACSS1;ENSG00000154930|ENST00000323482|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2084045410156 3 394.208495 1179.60366 0.38104 0.00015021 0.14363 5.662E-05 0.52468 0.00020683 394.2084695968133 15.974 0.5163 13.417 13.174 13.69 -2.557 258 108 3 0 0 0 0.30202 1 8246 8246 12.175 5.9829 1 26501000 5373 6357 3573 3660 6345 6345 0.021039327375547145 DAWVKKYDR 9 Unmodified _DAWVKKYDR_ 0 0 0 nc|ENSG00000154930|Q9NUB1-3|ACSS1;nc|ENSG00000154930|Q9NUB1-4|ACSS1;nc|ENSG00000154930|Q9NUB1-2|ACSS1;ENSG00000154930|ENST00000323482|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2087097167969 3 394.208495 1179.60366 0.51357 0.00020245 -0.094757 -3.7354E-05 0.41881 0.0001651 394.20846945180483 16.996 0.37309 14.409 14.208 14.581 -2.5866 194 66 4 0 0 0 0.40476 1 8841 8841 8.4443 0 1 39515000 5374 6357 3573 3660 6346 6346 0.021039327375547145 DAYELKHAL 9 Unmodified _DAYELKHAL_ 0 0 0 ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5 ENST00000513428.5_1_4:122602814-122617744:-|nuORF ENST00000513428.5_1_4:122602814-122617744:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8539733886719 3 353.85383 1058.53966 0.11937 4.2239E-05 0.59061 0.00020899 0.70998 0.00025123 353.8539301153426 35.953 0.25876 35.953 35.816 36.074 0 35 12 4 0 0 0 0.12424 1 19015 19015 28.495 17 1 12997000 5375 7141 3574 3661 6347 6347 0.012731525806202626 DAYELKHAL 9 Unmodified _DAYELKHAL_ 0 0 0 ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5 ENST00000513428.5_1_4:122602814-122617744:-|nuORF ENST00000513428.5_1_4:122602814-122617744:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.28076171875 2 530.277106 1058.53966 0.41823 0.00022178 3.3914 0.0017984 3.8097 0.0020202 530.2792655194137 35.968 0.15346 35.968 35.878 36.032 0 18 7 3 0 0 0 0.05447 1 19060 19060 43.858 24.601 1 20373000 5376 7141 3574 3661 6348 6348 0.012731525806202626 DAYELKHAL 9 Unmodified _DAYELKHAL_ 0 0 0 ENST00000513428.5_1_4:122602814-122617744:-|nuORF;ENSG00000164111|ENST00000296511|ANXA5 ENST00000513428.5_1_4:122602814-122617744:-|nuORF ENST00000513428.5_1_4:122602814-122617744:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 353.85383 1058.53966 1.0523 0.00037237 1.9497 0.00068991 3.002 0.0010623 354.1894998862707 40.202 0.33311 35.672 35.54 35.873 -4.5294 -0.14063 0.0012456 NaN 28.495 43 27 2 NaN NaN NaN NaN 0 NaN NaN 0 43807000 5377 7141 3574 3661 0.012731525806202626 DAYENKKPF 9 Unmodified _DAYENKKPF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000554084.5_1_14:100819360-100828234:-|nuORF;ENST00000555063.5_1_14:100820782-100842614:-|nuORF;ENST00000553808.5_1_14:100820782-100835522:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7350463867188 2 556.274564 1110.53457 -0.010201 -5.6748E-06 0.46243 0.00025724 0.45222 0.00025156 556.2749284131751 24.486 0.23764 24.486 24.386 24.624 0 22 11 3 0 0 0 0.19205 1 12515 12515 14.838 8.6325 1 1914900 5378 5208 3575 3662 6349 6349 -0.016271512820139833 DAYKDQISV 9 Unmodified _DAYKDQISV_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7598266601562 2 519.758746 1037.50294 0.33866 0.00017602 -0.0017999 -9.3553E-07 0.33686 0.00017508 519.7589505485627 35.88 0.19698 35.88 35.796 35.993 0 11 9 2 0 0 0 0.20428 1 19018 19018 22.736 6.8891 1 1967800 5379 384 3576 3663 6350 6350 -0.014311440359733751 DAYLVHGT 8 Unmodified _DAYLVHGT_ 0 0 0 REV__ENST00000596295.1_1_19:8552895-8553735:+|nuORF REV__ENST00000596295.1_1_19:8552895-8553735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2160034179688 2 438.216517 874.418482 -0.19724 -8.6432E-05 -0.68345 -0.0002995 -0.88069 -0.00038593 438.2162128215897 24.235 0.32675 24.235 24.078 24.405 0 66 20 4 0 0 0 0.61462 1 12441 12441 24.674 1.5255 1 39043000 + 5380 29219 3577 3664 6351 6351 -0.023750500620394632 DAYNSHLK 8 Unmodified _DAYNSHLK_ 0 0 0 ENST00000565890.1_1_16:89724550-89735902:+|nuORF;nc|ENSG00000167523|Q96N06|SPATA33;ENSG00000167523|ENST00000579310|SPATA33 ENST00000565890.1_1_16:89724550-89735902:+|nuORF ENST00000565890.1_1_16:89724550-89735902:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2336730957031 2 474.232699 946.450845 NaN NaN NaN NaN NaN NaN NaN 36.631 1 36.631 36.131 37.131 0 0 0 0 0.95607 1 19443 19443 9.3474 0 1 5381 7621 3578 3665 6352 6352 -0.0245226265905103 DAYPEIEKF 9 Unmodified _DAYPEIEKF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENSG00000250254|ENST00000504686|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.268798828125 2 556.268947 1110.52334 0.66211 0.00036831 -0.19406 -0.00010795 0.46805 0.00026036 556.268771607778 53.01 0.60545 53.01 52.657 53.263 0 103 27 5 0 0 0 0.040683 3 29350 29243;29350;29462 49.554 18.918 1 184600000 5382 7214 3579 3666 6353;6354;6355 6354 -0.027499733761487732 DAYPEIEKF 9 Unmodified _DAYPEIEKF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENSG00000250254|ENST00000504686|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2684936523438 2 556.268947 1110.52334 0.67875 0.00037757 0.14355 7.9854E-05 0.8223 0.00045742 556.2692335324911 53.628 0.37813 53.177 52.943 53.321 -0.45173 40 18 3 0 0 0 0.13231 1 28970 28970 29.841 10.584 1 4612700 5383 7214 3579 3666 6356 6356 -0.027499733761487732 DAYPEIEKF 9 Unmodified _DAYPEIEKF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENSG00000250254|ENST00000504686|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.26953125 2 556.268947 1110.52334 1.0305 0.00057324 0.048786 2.7138E-05 1.0793 0.00060038 556.2691248870608 59.868 0.58883 53.754 53.452 54.041 -6.1147 86 32 3 0 0 0 0.025842 3 38399 38399;38539;38674 57.722 27.085 1 505590000 5384 7214 3579 3666 6357;6358;6359 6357 -0.027499733761487732 DAYPEIEKF 9 Unmodified _DAYPEIEKF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2;ENST00000523659.5_1_5:159849319-159851384:+|nuORF;ENSG00000250254|ENST00000504686|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.268947 1110.52334 0.29797 0.00016575 -1.5594 -0.00086743 -1.2614 -0.00070168 556.2679156542372 53.251 0.23812 53.187 53.024 53.262 -0.063419 0.062733 -0.0015131 NaN 49.554 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1588000 5385 7214 3579 3666 -0.027499733761487732 DAYQEDLGF 9 Unmodified _DAYQEDLGF_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000466404.5_1_19:54631491-54634750:+|nuORF ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.22802734375 2 529.227279 1056.44001 0.67354 0.00035646 -0.1286 -6.8057E-05 0.54494 0.0002884 529.2269923181842 59.784 0.58132 59.784 59.577 60.158 0 53 26 3 0 0 0 0.25681 1 33295 33295 19.257 5.7491 1 14478000 5386 2342 3580 3667 6360 6360 -0.08595709823998732 DAYRDQFRM 9 Unmodified _DAYRDQFRM_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MSMS AL20221201_MKP_PDAC_01 4 401.1847534179688 3 401.185474 1200.53459 NaN NaN NaN NaN NaN NaN NaN 40.116 1 35.587 35.087 36.087 -4.5294 0 0 0 0.044471 1 23916 23916 55.235 45.991 1 5387 16019 3581 3668 6361 6361 -0.057654745536638075 DAYRQGHFTY 10 Unmodified _DAYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.8595275878906 3 419.859755 1256.55744 -0.88014 -0.00036954 -0.02579 -1.0828E-05 -0.90593 -0.00038036 420.19394807198256 30.407 0.2182 30.407 30.285 30.503 0 25 10 3 0 0 0 0.64628 1 15771 15771 7.9454 3.8288 1 3661900 5388 6943 3582 3669 6362 6362 -0.060581321645031494 DAYRQGHFTY 10 Unmodified _DAYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8596496582031 3 419.859755 1256.55744 1.7442 0.0007323 -0.27707 -0.00011633 1.4671 0.00061597 419.85954040549717 33.817 0.40144 29.832 29.643 30.045 -3.9853 47 21 3 0 0 0 0.6067 1 19353 19353 6.6235 3.3038 1 10470000 5389 6943 3582 3669 6363 6363 -0.060581321645031494 DAYRQGHFTY 10 Unmodified _DAYRQGHFTY_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 419.859755 1256.55744 -0.88014 -0.00036954 -0.02579 -1.0828E-05 -0.90593 -0.00038036 420.19394807198256 30.407 0.2182 30.407 30.285 30.503 0 0 0 NaN 7.9454 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3661900 5390 6943 3582 3669 -0.060581321645031494 DAYSGGAVNLY 11 Unmodified _DAYSGGAVNLY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.262451171875 2 565.261653 1128.50875 0.7278 0.0004114 1.021 0.00057713 1.7488 0.00098853 565.2616750655237 51.45 0.28268 51.45 51.278 51.561 0 27 12 3 0 0 0 0.16973 1 28392 28392 34.402 19.153 1 12953000 5391 1877 3583 3670 6364 6364 -0.05036045524275323 DAYSGGAVNLY 11 Unmodified _DAYSGGAVNLY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2657470703125 2 565.261653 1128.50875 1.2694 0.00071756 0.67557 0.00038187 1.945 0.0010994 565.2622403161738 60.602 0.24291 54.454 54.369 54.612 -6.1478 18 12 2 0 0 0 0.073964 1 38981 38981 45.7 30.861 1 21409000 5392 1877 3583 3670 6365 6365 -0.05036045524275323 DAYSVLREIY 10 Unmodified _DAYSVLREIY_ 0 0 0 REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2 REV__nc|ENSG00000290445|Q5T2Q4|CCNYL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.5596923828125 3 410.211794 1227.61355 0.25118 0.00010304 -1.702 -0.0006982 -1.4509 -0.00059516 410.2108525943758 84.96 0.08548 78.784 78.735 78.82 -6.1757 6 4 2 0 0 0 0.23426 1 55897 55897 7.4771 0.43998 1 6075700 + 5393 30027 3584 3671 6366 6366 0.008850759523056695 DAYTHLETF 9 Unmodified _DAYTHLETF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.751220703125 2 548.750921 1095.48729 0.53815 0.00029531 -1.4342 -0.00078702 -0.89606 -0.00049171 548.7500424135374 50.021 0.5388 50.021 49.812 50.35 0 93 24 6 0 0 0 0.0041763 2 27500 27500;27607 120.45 81.957 1 871040000 5394 3102 3585 3672 6367;6368 6367 -0.05663430552999671 DAYTHLETF 9 Unmodified _DAYTHLETF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7508544921875 2 548.750921 1095.48729 0.82096 0.0004505 -0.87904 -0.00048237 -0.058081 -3.1872E-05 548.7504703479977 50.539 0.34747 50.126 49.971 50.318 -0.41351 39 16 3 0 0 0 0.015445 1 27218 27218 68.081 50.968 1 17164000 5395 3102 3585 3672 6369 6369 -0.05663430552999671 DAYTHLETF 9 Unmodified _DAYTHLETF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.751708984375 2 548.750921 1095.48729 1.455 0.00079843 0.013392 7.3488E-06 1.4684 0.00080578 548.7509257235146 50.229 0.24406 50.18 50.027 50.271 -0.048824 30 11 3 0 0 0 0.0082281 1 27175 27175 92.822 67.423 1 5874400 5396 3102 3585 3672 6370 6370 -0.05663430552999671 DAYTHLETF 9 Unmodified _DAYTHLETF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7510375976562 2 548.750921 1095.48729 0.90201 0.00049498 -0.18698 -0.00010261 0.71503 0.00039237 548.7507522527964 57.295 0.66213 51.268 50.988 51.65 -6.0275 129 36 5 0 0 0 0.00069393 3 36642 36515;36642;36766 141.83 105.78 1 935860000 5397 3102 3585 3672 6371;6372;6373 6372 -0.05663430552999671 DAYTHLETF 9 Unmodified _DAYTHLETF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1096.434448242188 1 1096.49457 1095.48729 0.81099 0.00088924 0.18135 0.00019885 0.99234 0.0010881 1096.4942001201264 57.306 0.33014 51.278 51.131 51.461 -6.0275 26 17 2 0 0 0 0.0004779 2 36675 36675;36702 144.35 92.082 1 24396000 5398 3102 3585 3672 6374;6375 6374 -0.05663430552999671 DCCGDGGL 8 Unmodified _DCCGDGGL_ 0 0 0 ENST00000355628.9_1_3:56716933-56717212:-|nuORF ENST00000355628.9_1_3:56716933-56717212:-|nuORF ENST00000355628.9_1_3:56716933-56717212:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8772277832031 2 370.122914 738.231275 NaN NaN NaN NaN NaN NaN NaN 28.651 1 28.589 28.089 29.089 -0.062159 0 0 0 0.97444 1 14794 14794 0.79363 0 1 5399 12081 3586 3673 6376 6376 -0.14831152933413705 DCEECKYPTE 10 Unmodified _DCEECKYPTE_ 0 0 0 REV__nc|ENSG00000160321|O43345-2|ZNF208 REV__nc|ENSG00000160321|O43345-2|ZNF208 MSMS AL20221201_MKP_PDAC_01 4 406.1543884277344 3 406.15474 1215.44239 NaN NaN NaN NaN NaN NaN NaN 104.71 1 98.539 98.039 99.039 -6.1757 0 0 0 1.0024 1 70107 70107 0.13989 0 1 + 5400 21537 3587 3674 6377 6377 -0.15671365472871912 DCEEELDIKMF 11 Unmodified _DCEEELDIKMF_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.5272521972656 3 457.865078 1370.5734 0.74164 0.00033957 0.52618 0.00024092 1.2678 0.00058049 457.8650880934383 43.328 0.21662 38.564 38.477 38.693 -4.7648 24 15 2 0 0 0 0.30403 1 26393 26393 2.6312 0 1 13933000 + 5401 23464 3588 3675 6378 6378 -0.09705974824828445 DCFKDIVNM 9 Carbamidomethyl (C),Oxidation (M) _DC(Carbamidomethyl (C))FKDIVNM(Oxidation (M))_ DC(1)FKDIVNM DCFKDIVNM(1) DC(56)FKDIVNM DCFKDIVNM(56) 0 1 1 ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.251953125 2 579.251917 1156.48928 0.6522 0.00037779 -1.2795 -0.00074117 -0.62733 -0.00036338 579.2510053427302 46.991 0.18896 41.91 41.801 41.99 -5.0805 28 20 2 0 0 0 0.029718 1 29144 29144 55.503 35.049 1 23609000 5402 1900 3589 3676 6379 6379 185 319 -0.08270461131041884 DCFKTIISY 9 Carbamidomethyl (C) _DC(Carbamidomethyl (C))FKTIISY_ DC(1)FKTIISY DC(54)FKTIISY 0 1 0 ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000467971.5_1_2:242255375-242276932:+|nuORF ENSG00000168385|ENST00000391971|SEPTIN2 ENSG00000168385|ENST00000391971|SEPTIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7798461914062 2 573.778625 1145.5427 0.8213 0.00047124 0.25469 0.00014613 1.076 0.00061738 573.7787663006168 65.985 0.87083 59.809 59.478 60.349 -6.1757 123 46 3 0 0 0 0.032796 3 42734 42734;42877;43008 53.833 24.155 1 401470000 5403 7753 3590 3677 6380;6381;6382 6380 754 -0.024253403568764043 DCGDYSDEDNC 11 Unmodified _DCGDYSDEDNC_ 0 0 0 CON__Q3MHN2 CON__Q3MHN2 CON__Q3MHN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.1766967773438 2 618.1768 1234.33905 NaN NaN NaN NaN NaN NaN NaN 8.7487 1 8.7487 8.2487 9.2487 0 0 0 0 0.9435 1 4173 4173 0 0 1 + 5404 200 3591 3678 6383 6383 -0.26874897651327956 DCHESCNLGF 10 Unmodified _DCHESCNLGF_ 0 0 0 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 REV__nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS AL20221201_MKP_PDAC_01 4 562.7112426757812 2 562.710416 1123.40628 NaN NaN NaN NaN NaN NaN NaN 60.14 1 54.026 53.526 54.526 -6.1147 0 0 0 0.91523 1 38681 38681 7.2892 0.56607 1 + 5405 21406 3592 3679 6384 6384 -0.15048777859055917 DCLKFFPVI 9 Unmodified _DCLKFFPVI_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8114013671875 2 541.291171 1080.56779 -0.60336 -0.00032659 -0.65261 -0.00035325 -1.256 -0.00067984 541.2907011269045 101.99 0.14981 101.95 101.87 102.02 -0.045853 6 4 2 0 0 0 0.27545 1 56660 56660 25.399 2.2509 1 1967300 + 5406 23893 3593 3680 6385 6385 0.030727592363518852 DCLKFFPVI 9 Unmodified _DCLKFFPVI_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.291171 1080.56779 -0.60336 -0.00032659 -0.65261 -0.00035325 -1.256 -0.00067984 541.2907011269045 101.99 0.14981 101.95 101.87 102.02 -0.045853 0 0 NaN 25.399 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1967300 + 5407 23893 3593 3680 0.030727592363518852 DCLLGGWNTE 10 Carbamidomethyl (C) _DC(Carbamidomethyl (C))LLGGWNTE_ DC(1)LLGGWNTE DC(42)LLGGWNTE 0 1 0 REV__ENSG00000184916|ENST00000331782|JAG2 REV__ENSG00000184916|ENST00000331782|JAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7537231445312 2 582.753138 1163.49172 -0.50037 -0.00029159 -0.35928 -0.00020937 -0.85964 -0.00050096 582.7532700659916 55.844 0.24214 55.844 55.692 55.934 0 45 21 3 0 0 0 0.13391 1 31074 31074 41.84 17.819 1 19489000 + 5408 23451 3594 3681 6386 6386 1051 -0.0834828940173793 DCLLGGWNTE 10 Carbamidomethyl (C) _DC(Carbamidomethyl (C))LLGGWNTE_ 0 1 0 REV__ENSG00000184916|ENST00000331782|JAG2 REV__ENSG00000184916|ENST00000331782|JAG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.753138 1163.49172 -0.50037 -0.00029159 -0.35928 -0.00020937 -0.85964 -0.00050096 582.7532700659916 55.844 0.24214 55.844 55.692 55.934 0 0 0 NaN 41.84 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 19489000 + 5409 23451 3594 3681 1051 -0.0834828940173793 DCLPEDGEL 9 Unmodified _DCLPEDGEL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7086181640625 2 495.707865 989.401177 0.19866 9.8477E-05 1.8087 0.00089657 2.0073 0.00099505 495.7085949586764 63.847 0.33734 63.847 63.659 63.997 0 19 13 2 0 0 0 0.5029 1 35626 35626 7.2892 1.5288 1 1000200 5410 9027 3595 3682 6387 6387 -0.0939475845002562 DCLWTVQVVPH 11 Unmodified _DCLWTVQVVPH_ 0 0 0 REV__ENST00000478357.1_1_10:81056128-81056470:+|nuORF REV__ENST00000478357.1_1_10:81056128-81056470:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8855895996094 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 24.372 1 24.393 23.893 24.893 0.021185 0 0 0 0.94287 1 12572 12572 0.45452 0 1 + 5411 27632 3596 3683 6388 6388 -0.0027487130862482445 DCPTVSPD 8 Unmodified _DCPTVSPD_ 0 0 0 ENSG00000151746|ENST00000652176|BICD1 ENSG00000151746|ENST00000652176|BICD1 ENSG00000151746|ENST00000652176|BICD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.1719970703125 2 417.170918 832.327284 NaN NaN NaN NaN NaN NaN NaN 64.976 1 64.976 64.476 65.476 0 0 0 0 0.97444 1 36246 36246 2.3027 1.5091 1 5412 6144 3597 3684 6389 6389 -0.09558681821681603 DCQVAPLTHV 10 Unmodified _DCQVAPLTHV_ 0 0 0 nc|ENSG00000147573|Q9BYV6-4|TRIM55;nc|ENSG00000147573|Q9BYV6-2|TRIM55;nc|ENSG00000147573|Q9BYV6-3|TRIM55;ENSG00000147573|ENST00000315962|TRIM55 nc|ENSG00000147573|Q9BYV6-4|TRIM55 nc|ENSG00000147573|Q9BYV6-4|TRIM55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5147094726562 3 361.51482 1081.52263 -0.33163 -0.00011989 0.90079 0.00032565 0.56916 0.00020576 361.51517768960616 23.775 0.17849 23.775 23.694 23.873 0 13 8 2 0 0 0 0.71123 1 12158 12158 0.69767 0.24315 1 388280 5413 5862 3598 3685 6390 6390 -0.014870912968490302 DCSSGTYFPE 10 Unmodified _DCSSGTYFPE_ 0 0 0 nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2114868164062 2 553.210772 1104.40699 0.26474 0.00014646 0.85797 0.00047464 1.1227 0.0006211 553.2111551729861 70.348 0.24551 70.348 70.203 70.449 0 17 9 2 0 0 0 0.63399 1 39191 39191 9.3831 2.66 1 685500 5414 1968 3599 3686 6391 6391 -0.1410365993835967 DCYHIRRKE 9 Unmodified _DCYHIRRKE_ 0 0 0 REV__nc|ENSG00000102554|Q13887-2|KLF5 REV__nc|ENSG00000102554|Q13887-2|KLF5 MSMS AL20221201_MKP_PDAC_01 4 407.2067565917969 3 407.204868 1218.59277 NaN NaN NaN NaN NaN NaN NaN 92.612 1 86.436 85.936 86.936 -6.1757 0 0 0 0.82852 1 61251 61251 4.1895 0.60244 1 + 5415 18243 3600 3687 6392 6392 -0.007777929083658819 DCYYYSWLWQ 10 Unmodified _DCYYYSWLWQ_ 0 0 0 ENST00000544245.1_12:9098936-9102159:-|nuORF;ENST00000000412.3_12:9098936-9102159:-|nuORF ENST00000544245.1_12:9098936-9102159:-|nuORF ENST00000544245.1_12:9098936-9102159:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1981811523438 3 476.197268 1425.56997 NaN NaN NaN NaN NaN NaN NaN 3.4687 1 3.4564 2.9564 3.9564 -0.012334 0 0 0 1.005 1 1764 1764 0.12286 0.028024 1 5416 10960 3601 3688 6393 6393 -0.12578856816503503 DDAVNLMEHV 10 Unmodified _DDAVNLMEHV_ 0 0 0 ENST00000494539.5_1_2:55402928-55459402:-|nuORF;nc|ENSG00000162994|Q8NHS4-2|CLHC1;ENSG00000162994|ENST00000401408|CLHC1 ENST00000494539.5_1_2:55402928-55459402:-|nuORF ENST00000494539.5_1_2:55402928-55459402:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.759033203125 2 571.760963 1141.50737 NaN NaN NaN NaN NaN NaN NaN 30.71 1 30.74 30.24 31.24 0.030106 0 0 0 0.88176 1 16065 16065 8.7454 0 1 5417 6938 3602 3689 6394 6394 -0.05772002884691574 DDDDDDDCDDD 11 Unmodified _DDDDDDDCDDD_ 0 0 0 REV__ENSG00000189269|ENST00000317749|DRICH1 REV__ENSG00000189269|ENST00000317749|DRICH1 MSMS AL20221201_MKP_PDAC_01 4 636.6502075195312 2 636.651866 1271.28918 NaN NaN NaN NaN NaN NaN NaN 15.808 1 13.281 12.781 13.781 -2.5273 0 0 0 0.9435 1 8144 8144 0 0 1 + 5418 23773 3603 3690 6395 6395 -0.3356135384628942 DDDDDDDCDDD 11 Unmodified _DDDDDDDCDDD_ 0 0 0 REV__ENSG00000189269|ENST00000317749|DRICH1 REV__ENSG00000189269|ENST00000317749|DRICH1 MSMS AL20221201_MKP_PDAC_01 4 424.7711486816406 3 424.770336 1271.28918 NaN NaN NaN NaN NaN NaN NaN 109.68 1 103.5 103 104 -6.1757 0 0 0 0.9435 1 73235 73235 0 0 1 + 5419 23773 3603 3690 6396 6396 -0.3356135384628942 DDDDDESSEF 10 Unmodified _DDDDDESSEF_ 0 0 0 REV__nc|ENSG00000020922|P49959-2|MRE11 REV__nc|ENSG00000020922|P49959-2|MRE11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.7953491210938 3 391.794922 1172.36294 0.21843 8.5581E-05 0.96658 0.0003787 1.185 0.00046428 392.1295730874645 66.492 0.26591 66.492 66.372 66.637 0 17 11 2 0 0 0 0.71981 1 37126 37126 0.69767 0.46182 1 819160 + 5420 17108 3604 3691 6397 6397 -0.21635017621656516 DDDPDTEL 8 Unmodified _DDDPDTEL_ 0 0 0 nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.1808166503906 2 460.179995 918.345436 0.18774 8.6396E-05 1.1225 0.00051654 1.3102 0.00060293 460.1805098647413 45.116 0.25328 45.116 44.996 45.249 0 20 12 2 0 0 0 0.74163 1 24561 24561 13.508 3.3245 1 4399400 5421 6430 3605 3692 6398 6398 -0.1170026836599618 DDDSDNGF 8 Unmodified _DDDSDNGF_ 0 0 0 REV__ENSG00000126653|ENST00000247026|NSRP1 REV__ENSG00000126653|ENST00000247026|NSRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.6488952636719 2 442.648862 883.28317 1.3814 0.00061149 -1.397 -0.00061838 -0.015575 -6.8942E-06 442.6481129043142 63.812 0.25939 57.636 57.543 57.802 -6.1757 19 14 2 0 0 0 0.80975 1 41290 41290 0.79363 0.10326 1 7927700 + 5422 19554 3606 3693 6399 6399 -0.1631399471431223 DDDTISDWNL 10 Unmodified _DDDTISDWNL_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000426249.1_1_17:18364441-18364834:+|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2518310546875 2 597.251482 1192.48841 0.23847 0.00014243 0.54375 0.00032476 0.78222 0.00046718 597.25197817704 54.94 0.44275 54.462 54.27 54.712 -0.47798 55 21 4 0 0 0 0.66569 1 29847 29847 6.7232 1.9672 1 13440000 5423 1364 3607 3694 6400 6400 -0.10013260974733385 DDDWDEDWDGP 11 Unmodified _DDDWDEDWDGP_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 682.7308959960938 2 682.731111 1363.44767 NaN NaN NaN NaN NaN NaN NaN 0.048795 1 -0.025125 -0.52512 0.47488 -0.07392 0 0 0 0.9435 1 25 25 0 0 1 5424 4205 3608 3695 6401 6401 -0.21951647085052173 DDEDAGGGGGG 11 Unmodified _DDEDAGGGGGG_ 0 0 0 REV__ENSG00000049769|ENST00000055335|PPP1R3F REV__ENSG00000049769|ENST00000055335|PPP1R3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.6576232910156 2 453.657218 905.299883 0.3352 0.00015207 0.17584 7.9772E-05 0.51104 0.00023184 453.65760503480675 38.004 0.58009 38.021 37.634 38.214 0.01704 45 27 2 0 0 0 0.7453 1 20062 20062 0 0 1 2354700 + 5425 17254 3609 3696 6402 6402 -0.1565549382834206 DDEYSDDDDM 10 Unmodified _DDEYSDDDDM_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7418823242188 2 610.182605 1218.35066 NaN NaN NaN NaN NaN NaN NaN 21.749 1 21.749 21.249 22.249 0 0 0 0 1.0019 1 11028 11028 0.45834 0 1 5426 2794 3610 3697 6403 6403 -0.24978377356342207 DDEYSDDDDM 10 Unmodified _DDEYSDDDDM_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.1837158203125 2 610.182605 1218.35066 NaN NaN NaN NaN NaN NaN NaN 90.47 1 90.47 89.97 90.97 0 0 0 0 1.0024 1 50052 50052 0.40072 0.093686 1 5427 2794 3610 3697 6404 6404 -0.24978377356342207 DDFLPLIHVYL 11 Unmodified _DDFLPLIHVYL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8616943359375 2 672.863546 1343.71254 0.31683 0.00021318 -3.0627 -0.0020608 -2.7458 -0.0018476 672.8619761743006 100.53 0.09613 100.4 100.37 100.46 -0.13293 11 3 4 0 0 0 0.71036 1 54894 54894 3.2813 0.78282 1 1559900 5428 5401 3611 3698 6405 6405 0.05443098917203315 DDFLPLIHVYL 11 Unmodified _DDFLPLIHVYL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.8611450195312 2 672.863546 1343.71254 1.3673 0.00091999 -2.5064 -0.0016865 -1.1391 -0.00076646 672.862159413085 100.52 0.13551 100.48 100.4 100.53 -0.04216 10 4 3 0 0 0 0.63851 1 55852 55852 9.3831 1.2276 1 4985800 5429 5401 3611 3698 6406 6406 0.05443098917203315 DDFMCDYCEDT 11 Unmodified _DDFMCDYCEDT_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS AL20221201_MKP_PDAC_01 4 452.8059387207031 3 452.807011 1355.3992 NaN NaN NaN NaN NaN NaN NaN 17.651 1 15.065 14.565 15.565 -2.5866 0 0 0 0.9435 1 9249 9249 0 0 1 5430 2085 3612 3699 6407 6407 -0.2642792331248529 DDFSFYIYHLY 11 Unmodified _DDFSFYIYHLY_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8919982910156 3 494.890721 1481.65033 1.4677 0.00072634 -0.14752 -7.3005E-05 1.3202 0.00065333 494.8908103279692 82.417 0.31601 82.479 82.321 82.637 0.062004 24 11 3 0 0 0 0.71728 1 45613 45613 2.6312 0 1 5254100 5431 4368 3613 3700 6408 6408 -0.07122672221794346 DDGDDGGTDG 10 Unmodified _DDGDDGGTDG_ 0 0 0 nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 MSMS AL20221201_MKP_PDAC_01 4 462.085693359375 2 462.146683 922.278813 NaN NaN NaN NaN NaN NaN NaN 14.881 1 12.353 11.853 12.853 -2.5273 0 0 0 1.0061 1 7589 7589 0 0 1 5432 6200 3614 3701 6409 6409 -0.18543503927867278 DDGNSVFPA 9 Unmodified _DDGNSVFPA_ 0 0 0 ENSG00000164588|ENST00000303230|HCN1 ENSG00000164588|ENST00000303230|HCN1 ENSG00000164588|ENST00000303230|HCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 921.3995361328125 1 921.394852 920.387576 0.19693 0.00018145 1.2115 0.0011163 1.4084 0.0012977 921.3984008047453 103.12 0.070618 103.12 103.06 103.13 0 9 4 3 0 0 0 0.59218 1 56858 56858 1.8442 0.19162 1 1284800 5433 7209 3615 3702 6410 6410 -0.07580248166948422 DDHMWDYF 8 Unmodified _DDHMWDYF_ 0 0 0 ENST00000466431.6_1_3:9391398-9391506:-|nuORF ENST00000466431.6_1_3:9391398-9391506:-|nuORF ENST00000466431.6_1_3:9391398-9391506:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8099975585938 3 376.807892 1127.40185 0.079926 3.0117E-05 4.1094 0.0015485 4.1893 0.0015786 376.8098276266322 50.33 0.34199 50.33 50.114 50.456 0 31 15 3 0 0 0 0.80831 1 27764 27764 1.6526 0.45928 1 3430400 5434 13756 3616 3703 6411 6411 -0.15675919010323014 DDHSKQKNF 9 Unmodified _DDHSKQKNF_ 0 0 0 REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7967529296875 2 559.764894 1117.51524 0.48986 0.00027421 -2.8171 -0.0015769 -2.3273 -0.0013027 559.7632346249331 61.275 0.36393 61.275 61.069 61.433 0 26 15 3 0 0 0 0.21052 1 34199 34199 6.7232 2.3939 1 833620 + 5435 16957 3617 3704 6412 6412 -0.03882107572894711 DDIKDLKV 8 Unmodified _DDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2660827636719 2 473.266207 944.517862 -0.01261 -5.9681E-06 -0.22067 -0.00010444 -0.23328 -0.0001104 473.2661107348953 51.891 0.28617 51.891 51.753 52.039 0 21 12 2 0 0 0 0.19235 1 28673 28673 72.968 23.035 1 8735100 5436 6383 3618 3705 6413 6413 0.04338347832049294 DDIKDLKV 8 Unmodified _DDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2663879394531 2 473.266207 944.517862 0.645 0.00030526 0.050753 2.402E-05 0.69575 0.00032928 473.26584302536173 52.399 0.31172 51.965 51.789 52.101 -0.43367 30 15 3 0 0 0 0.29864 1 28313 28313 55.503 17.327 1 4520400 5437 6383 3618 3705 6414 6414 0.04338347832049294 DDIKDLKV 8 Unmodified _DDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.265625 2 473.266207 944.517862 0.61153 0.00028942 0.065032 3.0777E-05 0.67656 0.00032019 473.26607023278905 58.146 0.37352 52.118 52.01 52.383 -6.0275 33 19 2 0 0 0 0.25361 2 37249 37249;37403 61.602 15.902 1 19857000 5438 6383 3618 3705 6415;6416 6415 0.04338347832049294 DDIRMEMDD 9 Unmodified _DDIRMEMDD_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.4841003417969 3 380.482968 1138.42707 NaN NaN NaN NaN NaN NaN NaN 82.971 1 82.474 81.974 82.974 -0.49751 0 0 0 0.85798 1 45420 45420 0.23584 0 1 5439 4334 3619 3706 6417 6417 -0.13660232270035522 DDLAILYLA 9 Unmodified _DDLAILYLA_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000485720.1_1_1:60125899-60125998:+|nuORF;ENST00000476939.5_1_1:60125899-60232874:+|nuORF;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1006.562255859375 1 1006.54554 1005.53826 0.59929 0.00060322 -0.62369 -0.00062777 -0.024391 -2.455E-05 1006.54433958999 81.734 0.15677 81.239 81.185 81.342 -0.4952 8 5 2 0 0 0 0.55775 1 44756 44756 3.9444 2.1002 1 413010 5440 8218 3620 3707 6418 6418 0.03571518491844472 DDLAILYLA 9 Unmodified _DDLAILYLA_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000485720.1_1_1:60125899-60125998:+|nuORF;ENST00000476939.5_1_1:60125899-60232874:+|nuORF;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1006.54554 1005.53826 -0.13681 -0.00013771 0.045722 4.6021E-05 -0.091092 -9.1689E-05 1006.5455542331879 81.363 0.26355 81.363 81.176 81.439 0 0.0617 0.0001121 NaN 3.9444 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 549260 5441 8218 3620 3707 0.03571518491844472 DDLKKVYIN 9 Unmodified _DDLKKVYIN_ 0 0 0 REV__nc|ENSG00000138760|Q14108-2|SCARB2 REV__nc|ENSG00000138760|Q14108-2|SCARB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3065795898438 2 554.305864 1106.59717 -0.036298 -2.012E-05 0.81445 0.00045145 0.77815 0.00043133 554.306315836035 20.27 0.32104 20.27 20.057 20.378 0 40 22 4 0 0 0 0.15471 1 10194 10194 27.629 1.3607 1 1950300 + 5442 20361 3621 3708 6419 6419 0.04813994786195508 DDLKKVYIN 9 Unmodified _DDLKKVYIN_ 0 0 0 REV__nc|ENSG00000138760|Q14108-2|SCARB2 REV__nc|ENSG00000138760|Q14108-2|SCARB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.306396484375 2 554.305864 1106.59717 0.081322 4.5077E-05 -2.358 -0.001307 -2.2767 -0.001262 554.3042902412858 22.92 0.22432 22.92 22.832 23.056 0 19 12 2 0 0 0 0.46501 1 11664 11664 9.3831 0 1 1131700 + 5443 20361 3621 3708 6420 6420 0.04813994786195508 DDLKKVYIN 9 Unmodified _DDLKKVYIN_ 0 0 0 REV__nc|ENSG00000138760|Q14108-2|SCARB2 REV__nc|ENSG00000138760|Q14108-2|SCARB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.304931640625 2 554.305864 1106.59717 0.3764 0.00020864 -0.50629 -0.00028064 -0.1299 -7.2003E-05 554.305545528784 22.717 0.19016 19.938 19.857 20.047 -2.7784 24 15 2 0 0 0 0.19127 1 12224 12224 24.021 1.2843 1 4220900 + 5444 20361 3621 3708 6421 6421 0.04813994786195508 DDLKKVYIN 9 Unmodified _DDLKKVYIN_ 0 0 0 REV__nc|ENSG00000138760|Q14108-2|SCARB2 REV__nc|ENSG00000138760|Q14108-2|SCARB2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 554.305864 1106.59717 0.3764 0.00020864 -0.50629 -0.00028064 -0.1299 -7.2003E-05 554.305545528784 22.717 0.19016 19.938 19.857 20.047 -2.7784 -0.16584 -0.0010521 NaN 27.629 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4220900 + 5445 20361 3621 3708 0.04813994786195508 DDMNFYPQL 9 Unmodified _DDMNFYPQL_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7454223632812 2 571.744782 1141.47501 0.61038 0.00034898 1.4256 0.00081508 2.036 0.0011641 571.7462314131484 57.786 0.49234 57.786 57.585 58.078 0 54 22 4 0 0 0 0.2143 2 32102 32102;32207 21.747 1.293 1 11929000 + 5446 19463 3622 3709 6422;6423 6422 -0.090067902877081 DDMNFYPQL 9 Unmodified _DDMNFYPQL_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.744782 1141.47501 0.61038 0.00034898 1.4256 0.00081508 2.036 0.0011641 571.7462314131484 57.786 0.49234 57.786 57.585 58.078 0 0 0 NaN 21.747 54 22 4 NaN NaN NaN NaN 0 NaN NaN 0 11929000 + 5447 19463 3622 3709 -0.090067902877081 DDNCNNDED 9 Unmodified _DDNCNNDED_ 0 0 0 ENSG00000136541|ENST00000410096|ERMN;nc|ENSG00000136541|Q8TAM6-2|ERMN ENSG00000136541|ENST00000410096|ERMN ENSG00000136541|ENST00000410096|ERMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.7735290527344 3 351.773575 1052.2989 -0.30663 -0.00010786 -0.08038 -2.8276E-05 -0.38701 -0.00013614 351.77340913031134 22.825 0.59042 22.825 22.465 23.056 0 55 30 2 0 0 0 0.61381 2 11589 11589;11688 0.23584 0.076522 1 1372600 5448 4834 3623 3710 6424;6425 6424 -0.22516076259580586 DDNCNNDED 9 Unmodified _DDNCNNDED_ 0 0 0 ENSG00000136541|ENST00000410096|ERMN;nc|ENSG00000136541|Q8TAM6-2|ERMN ENSG00000136541|ENST00000410096|ERMN ENSG00000136541|ENST00000410096|ERMN MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.7750244140625 3 351.773575 1052.2989 1.2366 0.00043501 -1.5218 -0.00053531 -0.28514 -0.0001003 351.77295995342706 26.94 0.37527 23.904 23.665 24.04 -3.0365 32 19 2 0 0 0 0.61381 1 14825 14825 0.23584 0.23584 1 11022000 5449 4834 3623 3710 6426 6426 -0.22516076259580586 DDNGVLNG 8 Unmodified _DDNGVLNG_ 0 0 0 nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5 nc|ENSG00000104055|O43548-2|TGM5 nc|ENSG00000104055|O43548-2|TGM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1796264648438 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 4.4967 1 4.4904 3.9904 4.9904 -0.0062971 0 0 0 0.97444 1 2274 2274 0.69038 0.69038 1 5450 2173 3624 3711 6427 6427 -0.06336803855458584 DDPAYDMEEE 10 Unmodified _DDPAYDMEEE_ 0 0 0 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 MSMS AL20221201_MKP_PDAC_01 4 607.2129516601562 2 607.213708 1212.41286 NaN NaN NaN NaN NaN NaN NaN 0.12751 1 -2.3545 -2.8545 -1.8545 -2.482 0 0 0 1.0061 1 70 70 0 0 1 + 5451 16996 3625 3712 6428 6428 -0.18484606217316468 DDPNWFRL 8 Unmodified _DDPNWFRL_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-4|NIN REV__nc|ENSG00000100503|Q8N4C6-4|NIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7528076171875 2 531.753798 1061.49304 NaN NaN NaN NaN NaN NaN NaN 94.426 1 94.426 93.926 94.926 0 0 0 0 0.97444 1 52196 52196 0.69038 0.16561 1 + 5452 18075 3626 3713 6429 6429 -0.03524287250661473 DDPRYRMFSN 10 Unmodified _DDPRYRMFSN_ 0 0 0 nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 nc|ENSG00000196091|Q00872-5|MYBPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.7902221679688 2 650.790586 1299.56662 1.1092 0.00072186 -1.3475 -0.00087696 -0.23833 -0.0001551 650.7897146229614 35.802 0.45091 31.61 31.336 31.787 -4.1928 46 28 2 0 0 0 0.63399 1 20740 20740 9.3831 0.63772 1 8375900 5453 9758 3627 3714 6430 6430 -0.07118106870484553 DDRRYFCRVEF 11 Unmodified _DDRRYFCRVEF_ 0 0 0 ENSG00000197046|ENST00000389474|SIGLEC15 ENSG00000197046|ENST00000389474|SIGLEC15 ENSG00000197046|ENST00000389474|SIGLEC15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 753.352294921875 2 753.351342 1504.68813 1.245 0.0009379 1.6609 0.0012512 2.9059 0.0021891 753.3521440840965 100.21 0.16493 94.039 93.957 94.122 -6.1757 19 9 3 0 0 0 0.5229 1 66949 66949 15.248 3.0078 1 21119000 5454 9901 3628 3715 6431 6431 -0.04402484508023008 DDRVLSSLVR 10 Unmodified _DDRVLSSLVR_ 0 0 0 ENST00000535245.1_1_12:121017538-121019044:-|nuORF;ENSG00000167272|ENST00000357500|POP5;ENST00000542776.5_1_12:121017123-121019113:-|nuORF;ENST00000543355.5_1_12:121017699-121019165:-|nuORF;ENST00000539716.1_1_12:121018789-121019198:-|nuORF;nc|ENSG00000167272|Q969H6-2|POP5 ENST00000535245.1_1_12:121017538-121019044:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2181091308594 3 387.219172 1158.63569 NaN NaN NaN NaN NaN NaN NaN 17.323 1 17.323 16.823 17.823 0 0 0 0 0.99897 1 8525 8525 0.77653 0.4259 1 5455 7595 3629 3716 6432 6432 0.06271300420712578 DDSDNYND 8 Unmodified _DDSDNYND_ 0 0 0 nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62 nc|ENSG00000181626|A6NC57-2|ANKRD62 nc|ENSG00000181626|A6NC57-2|ANKRD62 MSMS AL20221201_MKP_PDAC_01 4 479.1550598144531 2 479.157051 956.299549 NaN NaN NaN NaN NaN NaN NaN 108.45 1 102.27 101.77 102.77 -6.1757 0 0 0 0.97444 1 72482 72482 2.5775 0.51773 1 5456 8982 3630 3717 6433 6433 -0.18034913548228815 DDSDNYND 8 Unmodified _DDSDNYND_ 0 0 0 nc|ENSG00000181626|A6NC57-2|ANKRD62;ENST00000418274.2_1_18:12102771-12127935:+|nuORF;ENSG00000181626|ENST00000587848|ANKRD62 nc|ENSG00000181626|A6NC57-2|ANKRD62 nc|ENSG00000181626|A6NC57-2|ANKRD62 MSMS AL20221201_MKP_PDAC_01 4 479.1559143066406 2 479.157051 956.299549 NaN NaN NaN NaN NaN NaN NaN 108.81 1 102.64 102.14 103.14 -6.1757 0 0 0 0.97444 1 72704 72704 2.5775 0.51773 1 5457 8982 3630 3717 6434 6434 -0.18034913548228815 DDSMSKLIY 9 Unmodified _DDSMSKLIY_ 0 0 0 REV__ENSG00000088387|ENST00000682017|DOCK9 REV__ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2561645507812 2 536.254982 1070.49541 0.12381 6.6392E-05 1.594 0.00085481 1.7178 0.0009212 536.2557818662888 77.002 0.31074 77.052 76.91 77.221 0.050102 27 12 3 0 0 0 0.45045 1 42500 42500 10.074 0.72649 1 3612000 + 5458 17805 3631 3718 6435 6435 -0.037016196278727875 DDSMSKLIY 9 Unmodified _DDSMSKLIY_ 0 0 0 REV__ENSG00000088387|ENST00000682017|DOCK9 REV__ENSG00000088387|ENST00000682017|DOCK9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.254982 1070.49541 0.12381 6.6392E-05 1.594 0.00085481 1.7178 0.0009212 536.2557818662888 77.002 0.31074 77.052 76.91 77.221 0.050102 0.032433 0.0012409 NaN 10.074 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3612000 + 5459 17805 3631 3718 -0.037016196278727875 DDSYEVDSTF 10 Unmodified _DDSYEVDSTF_ 0 0 0 REV__ENSG00000136040|ENST00000258526|PLXNC1 REV__ENSG00000136040|ENST00000258526|PLXNC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2301025390625 2 589.230216 1176.44588 0.81049 0.00047756 -1.5092 -0.00088927 -0.69873 -0.00041171 589.2292115535051 100.52 0.13464 94.34 94.254 94.389 -6.1757 11 7 2 0 0 0 0.62068 1 67263 67263 10.074 0.72649 1 16020000 + 5460 20130 3632 3719 6436 6436 -0.1352865610297158 DDTVAELDRHL 11 Unmodified _DDTVAELDRHL_ 0 0 0 nc|ENSG00000148187|Q96E11-8|MRRF;nc|ENSG00000148187|Q96E11-3|MRRF;ENSG00000148187|ENST00000344641|MRRF nc|ENSG00000148187|Q96E11-8|MRRF nc|ENSG00000148187|Q96E11-8|MRRF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.7630004882812 2 642.314948 1282.61534 -0.46135 -0.00029633 0.53473 0.00034347 0.07338 4.7133E-05 642.3154696544427 34.03 0.069149 33.839 33.795 33.865 -0.19132 4 2 2 0 0 0 0.27972 1 17761 17761 18.146 7.3224 1 497140 5461 5901 3633 3720 6437 6437 -0.014659150297802626 DDVLDCLRLK 10 Unmodified _DDVLDCLRLK_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2138366699219 3 397.213029 1188.61726 NaN NaN NaN NaN NaN NaN NaN 24.765 1 24.763 24.263 25.263 -0.0016766 0 0 0 0.85122 1 12664 12664 5.7834 2.1964 1 + 5462 24200 3634 3721 6438 6438 0.030494224544554527 DDVQFLAY 8 Unmodified _DDVQFLAY_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6 REV__ENSG00000113211|ENST00000231136|PCDHB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7472229003906 2 485.729458 969.444362 0.61651 0.00029945 -0.67803 -0.00032934 -0.061528 -2.9886E-05 485.7291261373014 60.047 0.23724 60.047 59.962 60.199 0 16 10 2 0 0 0 0.78849 1 33458 33458 9.3474 3.587 1 776460 + 5463 18855 3635 3722 6439 6439 -0.041582006104363245 DDVQFLAY 8 Unmodified _DDVQFLAY_ 0 0 0 REV__ENSG00000113211|ENST00000231136|PCDHB6 REV__ENSG00000113211|ENST00000231136|PCDHB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.4515991210938 1 970.451639 969.444362 0.51894 0.00050361 -0.14549 -0.0001412 0.37345 0.00036241 970.4520586058652 60.067 0.25693 60.067 59.943 60.199 0 16 11 2 0 0 0 0.52622 1 33500 33500 32.305 3.8186 1 856040 + 5464 18855 3635 3722 6440 6440 -0.041582006104363245 DDVSWYCYCK 10 Unmodified _DDVSWYCYCK_ 0 0 0 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.8350524902344 3 427.835341 1280.4842 0.32624 0.00013958 -1.4184 -0.00060682 -1.0921 -0.00046725 427.8348189191336 72.137 0.40479 72.176 72.035 72.439 0.039024 67 19 4 0 0 0 0.71123 1 39784 39784 0.69767 0.19171 1 22757000 5465 16285 3636 3723 6441 6441 -0.14482764993681485 DDVSWYCYCK 10 Unmodified _DDVSWYCYCK_ 0 0 0 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.1698608398438 3 427.835341 1280.4842 0.42271 0.00018085 -0.34896 -0.0001493 0.073749 3.1552E-05 427.83505627283716 85.492 1.2779 79.316 78.532 79.81 -6.1757 153 76 3 0 0 0 0.71276 1 56163 56163 0.62683 0 1 36145000 5466 16285 3636 3723 6442 6442 -0.14482764993681485 DDVSWYCYCK 10 Unmodified _DDVSWYCYCK_ 0 0 0 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 nc|ENSG00000155085|Q5TCS8-1|AK9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 427.835341 1280.4842 0.6318 0.00027031 -0.83596 -0.00035765 -0.20416 -8.7345E-05 427.83505923392016 72.773 0.32727 72.297 72.146 72.473 -0.47588 0.060457 0.00037573 NaN 0.69767 42 14 5 NaN NaN NaN NaN 0 NaN NaN 0 2247800 5467 16285 3636 3723 -0.14482764993681485 DDVVIEFIF 9 Unmodified _DDVVIEFIF_ 0 0 0 ENST00000462710.5_1_1:24969817-24973316:+|nuORF;nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 ENST00000462710.5_1_1:24969817-24973316:+|nuORF ENST00000462710.5_1_1:24969817-24973316:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.282958984375 2 548.78169 1095.54883 0.065568 3.5983E-05 -1.9746 -0.0010836 -1.909 -0.0010476 549.2826482088175 69.199 0.43353 68.719 68.465 68.899 -0.48071 50 18 4 0 0 0 0.2001 1 37804 37804 23.148 5.0134 1 2022300 5468 4498 3637 3724 6443 6443 0.004875011462672774 DDVVIEFIF 9 Unmodified _DDVVIEFIF_ 0 0 0 ENST00000462710.5_1_1:24969817-24973316:+|nuORF;nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENSG00000133226|ENST00000323848|SRRM1 ENST00000462710.5_1_1:24969817-24973316:+|nuORF ENST00000462710.5_1_1:24969817-24973316:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.78169 1095.54883 0.6214 0.00034101 -1.3211 -0.000725 -0.69971 -0.00038399 548.780174353527 68.675 0.29936 68.701 68.54 68.84 0.025154 -0.0090145 0.00048602 NaN 23.148 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2238000 5469 4498 3637 3724 0.004875011462672774 DDYDCEEDEE 10 Unmodified _DDYDCEEDEE_ 0 0 0 nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.1880493164062 2 631.187888 1260.36122 NaN NaN NaN NaN NaN NaN NaN 0.18455 1 0.18455 -0.31545 0.68455 0 0 0 0 1.0061 1 90 90 0 0 1 5470 5906 3638 3725 6444 6444 -0.25854394701877936 DDYLIKFPM 9 Unmodified _DDYLIKFPM_ 0 0 0 REV__nc|ENSG00000153707|P23468-2|PTPRD REV__nc|ENSG00000153707|P23468-2|PTPRD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2232055664062 2 571.283543 1140.55253 0.37524 0.00021437 2.5852 0.0014769 2.9605 0.0016913 571.2854733478424 48.132 0.2175 48.132 47.995 48.212 0 13 10 2 0 0 0 0.21798 1 26336 26336 0.6015 0 1 1861400 + 5471 21179 3639 3726 6445 6445 -0.012121523515133958 DEAQREWFV 9 Unmodified _DEAQREWFV_ 0 0 0 REV__nc|ENSG00000171105|P06213-2|INSR REV__nc|ENSG00000171105|P06213-2|INSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2791748046875 2 590.275095 1178.53564 0.093065 5.4934E-05 2.5121 0.0014828 2.6052 0.0015378 590.2778196905647 49.08 0.38285 49.08 48.874 49.256 0 26 18 2 0 0 0 0.25681 1 26958 26958 19.257 10.512 1 2606300 + 5472 22532 3640 3727 6446 6446 -0.04648936913099533 DECSNGDNLC 10 Unmodified _DECSNGDNLC_ 0 0 0 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1233520507812 3 357.123551 1068.34882 0.37534 0.00013404 -0.9953 -0.00035545 -0.61996 -0.0002214 357.12318671889517 53.55 0.33068 53.55 53.439 53.77 0 27 15 2 0 0 0 0.72196 1 29713 29713 0.15932 0 1 3445900 5473 5115 3641 3728 6447 6447 -0.1826166485527665 DECSNGDNLC 10 Unmodified _DECSNGDNLC_ 0 0 0 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.1226806640625 3 357.123551 1068.34882 0.18655 6.6623E-05 -0.42425 -0.00015151 -0.23769 -8.4885E-05 357.1231950453723 54.211 0.19581 53.745 53.626 53.822 -0.46664 18 9 2 0 0 0 0.72196 1 29369 29369 0.15932 0 1 2197200 5474 5115 3641 3728 6448 6448 -0.1826166485527665 DEDDFVHISL 10 Unmodified _DEDDFVHISL_ 0 0 0 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 MSMS AL20221201_MKP_PDAC_01 4 397.185791015625 3 397.183904 1188.52988 NaN NaN NaN NaN NaN NaN NaN 65.388 1 59.212 58.712 59.712 -6.1757 0 0 0 0.7417 1 42438 42438 8.9762 3.1928 1 + 5475 17907 3642 3729 6449 6449 -0.05684080215405629 DEDSCLLPV 9 Unmodified _DEDSCLLPV_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2879028320312 2 495.726058 989.437562 0.22379 0.00011094 0.77794 0.00038565 1.0017 0.00049658 495.726415315406 66.336 0.2341 65.852 65.711 65.946 -0.48323 15 12 2 0 0 0 0.20727 1 36173 36173 7.9102 0 1 2108200 + 5476 17004 3643 3730 6450 6450 -0.05757881553290645 DEEDDEGVY 9 Unmodified _DEEDDEGVY_ 0 0 0 REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF REV__ENST00000453595.1_1_X:36980271-36981156:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.6936645507812 2 535.693466 1069.37238 1.1919 0.00063847 -0.41796 -0.0002239 0.7739 0.00041457 535.6930434120783 90.569 0.59896 84.394 84.156 84.755 -6.1757 77 35 3 0 0 0 0.58466 1 59783 59783 2.3027 0 1 21590000 + 5477 23998 3644 3731 6451 6451 -0.1595320454546254 DEEEALIDEQ 10 Unmodified _DEEEALIDEQ_ 0 0 0 ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2 ENSG00000064270|ENST00000262429|ATP2C2 ENSG00000064270|ENST00000262429|ATP2C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2576293945312 2 595.756598 1189.49864 -0.41124 -0.000245 0.070951 4.227E-05 -0.34029 -0.00020273 595.756812524378 56.132 0.38776 56.132 55.934 56.322 0 43 18 4 0 0 0 0.34249 1 31164 31164 24.991 3.454 1 11220000 5478 871 3645 3732 6452 6452 -0.08852698040163887 DEELSCDHYC 10 Unmodified _DEELSCDHYC_ 0 0 0 nc|ENSG00000127241|P48740-4|MASP1;ENSG00000127241|ENST00000296280|MASP1;ENST00000460839.5_1_3:186974439-187003786:-|nuORF;nc|ENSG00000127241|P48740-3|MASP1;nc|ENSG00000127241|P48740|MASP1 nc|ENSG00000127241|P48740-4|MASP1 nc|ENSG00000127241|P48740-4|MASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.2113037109375 2 607.210446 1212.40634 NaN NaN NaN NaN NaN NaN NaN 2.8203 1 2.8203 2.3203 3.3203 0 0 0 0 1.0024 1 1367 1367 0.40072 0 1 5479 3993 3646 3733 6453 6453 -0.19136822649693386 DEESQLCPRF 10 Unmodified _DEESQLCPRF_ 0 0 0 REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF REV__ENST00000531765.2_1_11:67201468-67201970:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2291870117188 3 408.516889 1222.52884 NaN NaN NaN NaN NaN NaN NaN 98.815 1 92.64 92.14 93.14 -6.1757 0 0 0 0.76313 1 65616 65616 8.4443 3.0416 1 + 5480 22884 3647 3734 6454 6454 -0.07352617855985955 DEETMDIEL 9 Unmodified _DEETMDIEL_ 0 0 0 nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-3|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-3|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.4894714355469 3 365.490117 1093.44852 0.030675 1.1211E-05 -2.8703 -0.0010491 -2.8396 -0.0010378 365.4899614164218 62.584 0.46558 62.584 62.454 62.92 0 46 16 4 0 0 0 0.54213 1 34869 34869 4.897 3.4419 1 3918800 5481 6314;16282 3648 3735 6455 6455 -0.09446523969700138 DEETSYFLSF 10 Unmodified _DEETSYFLSF_ 0 0 0 REV__ENSG00000102452|ENST00000251127|NALCN REV__ENSG00000102452|ENST00000251127|NALCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.267333984375 2 619.266601 1236.51865 1.1501 0.00071219 0.16625 0.00010296 1.3163 0.00081515 619.2665429503395 79.262 0.47569 73.086 72.829 73.304 -6.1757 62 26 3 0 0 0 0.35903 1 51945 51945 24.021 4.7636 1 39776000 + 5482 18238 3649 3736 6456 6456 -0.09014902309559147 DEGAGHFV 8 Unmodified _DEGAGHFV_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD;ENST00000581802.1_1_18:29542651-29543200:+|nuORF ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 831.36181640625 1 831.363158 830.355882 -0.0021062 -1.751E-06 -1.59 -0.0013218 -1.5921 -0.0013236 831.3621234464991 103.56 0.02449 103.56 103.55 103.58 0 12 7 2 0 0 0 0.80992 1 57089 57089 0.69038 0.69038 1 852420 5483 5436 3650 3737 6457 6457 -0.06608196130241595 DEGHPGSVPM 10 Unmodified _DEGHPGSVPM_ 0 0 0 ENST00000227451.3_1_11:58972400-58972907:+|nuORF ENST00000227451.3_1_11:58972400-58972907:+|nuORF ENST00000227451.3_1_11:58972400-58972907:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 513.2225952148438 2 513.221474 1024.42839 NaN NaN NaN NaN NaN NaN NaN 72.934 1 66.758 66.258 67.258 -6.1757 0 0 0 0.66657 1 47706 47706 18.146 1.0335 1 5484 11048 3651 3738 6458 6458 -0.08284230118965752 DEGSDSHFTL 10 Unmodified _DEGSDSHFTL_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1;STON1|p.D199G|1|0.26|ENSG00000243244|chr2:48581229-48581229|A/G|missense_variant nc|ENSG00000243244|Q9Y6Q2-3|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.231201171875 2 554.233093 1106.45163 1.057 0.00058581 -0.39476 -0.00021879 0.66221 0.00036702 554.2323439371384 88.774 0.49129 82.598 82.373 82.865 -6.1757 54 27 3 0 0 0 0.66569 1 58486 58486 6.7232 0.99131 1 18837000 5485 986 3652 3739 6459 6459 -0.09733512800653443 DEGSNFSRCS 10 Unmodified _DEGSNFSRCS_ 0 0 0 nc|ENSG00000153391|Q6PI98-3|INO80C nc|ENSG00000153391|Q6PI98-3|INO80C nc|ENSG00000153391|Q6PI98-3|INO80C MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2161865234375 2 551.21692 1100.41929 0.85292 0.00047015 -1.6568 -0.00091326 -0.80388 -0.00044311 551.2158649121044 39.139 0.30167 34.688 34.523 34.825 -4.4509 36 19 2 0 0 0 0.68209 1 23247 23247 4.897 0.141 1 15386000 5486 16281 3653 3740 6460 6460 -0.12690623475305074 DEGWVPLEI 9 Unmodified _DEGWVPLEI_ 0 0 0 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2615356445312 2 529.263665 1056.51278 -0.21338 -0.00011293 -2.4184 -0.00128 -2.6318 -0.0013929 529.2623372387352 31.892 0.42598 31.892 31.72 32.146 0 43 20 3 0 0 0 0.07087 1 16588 16588 28.487 6.7402 1 8098700 5487 5046 3654 3741 6461 6461 -0.013219560305742561 DEHGGYSFT 9 Unmodified _DEHGGYSFT_ 0 0 0 REV__ENSG00000177181|ENST00000431473|RIMKLA REV__ENSG00000177181|ENST00000431473|RIMKLA MSMS AL20221201_MKP_PDAC_01 4 506.7022094726562 2 506.703971 1011.39339 NaN NaN NaN NaN NaN NaN NaN 43.26 1 38.495 37.995 38.995 -4.7648 0 0 0 0.6306 1 26255 26255 11.64 3.7301 1 + 5488 22968 3655 3742 6462 6462 -0.11185149655273108 DEHGVNMW 8 Unmodified _DEHGVNMW_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-10|MARK2 REV__nc|ENSG00000072518|Q7KZI7-10|MARK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.203857421875 2 494.203084 986.391615 0.30282 0.00014965 0.55078 0.0002722 0.8536 0.00042185 494.20356965800215 51.612 0.51864 51.612 51.412 51.93 0 123 23 8 0 0 0 0.79783 1 28572 28572 7.9102 1.187 1 144280000 + 5489 17518 3656 3743 6463 6463 -0.10212481944881802 DEHGVNMW 8 Unmodified _DEHGVNMW_ 0 0 0 REV__nc|ENSG00000072518|Q7KZI7-10|MARK2 REV__nc|ENSG00000072518|Q7KZI7-10|MARK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.203084 986.391615 0.77526 0.00038314 0.88096 0.00043537 1.6562 0.00081851 494.2034636380025 52.214 0.22192 51.781 51.669 51.891 -0.43367 0.041476 0.00016852 NaN 7.9102 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 693890 + 5490 17518 3656 3743 -0.10212481944881802 DEIIVINELL 10 Unmodified _DEIIVINELL_ 0 0 0 nc|ENSG00000154839|Q96BD8-2|SKA1;ENSG00000154839|ENST00000285116|SKA1 nc|ENSG00000154839|Q96BD8-2|SKA1 nc|ENSG00000154839|Q96BD8-2|SKA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8918151855469 3 390.892062 1169.65436 NaN NaN NaN NaN NaN NaN NaN 56.984 1 56.916 56.416 57.416 -0.068737 0 0 0 0.78298 1 31011 31011 11.518 2.5416 1 5491 6353 3657 3744 6464 6464 0.07631417271909413 DEILKDQV 8 Unmodified _DEILKDQV_ 0 0 0 nc|ENSG00000182732|P49758-12|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-2|RGS6;ENSG00000182732|ENST00000553525|RGS6 nc|ENSG00000182732|P49758-12|RGS6 nc|ENSG00000182732|P49758-12|RGS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2563171386719 2 480.25584 958.497126 0.21359 0.00010258 0.3196 0.00015349 0.5332 0.00025607 480.2558906742682 39.989 0.19476 39.989 39.873 40.068 0 15 9 2 0 0 0 0.72953 1 21447 21447 14.582 1.0738 1 1996800 5492 9080 3658 3745 6465 6465 0.016217574523807343 DEILTMELMI 10 Unmodified _DEILTMELMI_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1;ENST00000574121.1_1_19:30312646-30312790:+|nuORF nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2029724121094 3 403.203142 1206.5876 1.3398 0.00054023 -0.98773 -0.00039826 0.35211 0.00014197 403.2030869953749 37.406 0.4149 33.123 32.891 33.306 -4.2835 81 24 5 0 0 0 0.54684 1 21940 21940 8.4443 0 1 21916000 5493 2282 3659 3746 6466 6466 -0.007432776058521995 DEITVAYEL 9 Unmodified _DEITVAYEL_ 0 0 0 REV__ENST00000497388.5_1_7:129933020-129939280:+|nuORF REV__ENST00000497388.5_1_7:129933020-129939280:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7614135742188 2 526.760955 1051.50736 NaN NaN NaN NaN NaN NaN NaN 69.228 1 69.228 68.728 69.728 0 0 0 0 0.50124 1 38573 38573 15.847 4.2069 1 + 5494 19611 3660 3747 6467 6467 -0.016336796130417497 DEKFRMVY 8 Unmodified _DEKFRMVY_ 0 0 0 nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3 nc|ENSG00000149212|P58005-4|SESN3 nc|ENSG00000149212|P58005-4|SESN3 MSMS AL20221201_MKP_PDAC_01 4 363.1803588867188 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 90.082 1 83.907 83.407 84.407 -6.1757 0 0 0 0.97444 1 59480 59480 1.8442 0 1 5495 5991 3661 3748 6468 6468 -0.022981898084935892 DEKHSIYP 8 Unmodified _DEKHSIYP_ 0 0 0 ENSG00000164187|ENST00000296603|LMBRD2 ENSG00000164187|ENST00000296603|LMBRD2 ENSG00000164187|ENST00000296603|LMBRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7393798828125 2 494.740357 987.46616 -0.77363 -0.00038275 -0.14722 -7.2837E-05 -0.92086 -0.00045558 494.7402472850398 32.861 0.1974 32.861 32.811 33.008 0 14 9 2 0 0 0 0.75262 1 17233 17233 12.532 0 1 2154400 5496 7159 3662 3749 6469 6469 -0.028073958618620054 DEKQKAVF 8 Unmodified _DEKQKAVF_ 0 0 0 REV__ENSG00000072786|ENST00000176763|STK10 REV__ENSG00000072786|ENST00000176763|STK10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7582702636719 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 62.227 1 62.227 61.727 62.727 0 0 0 0 0.93587 1 34704 34704 13.508 0.97634 1 + 5497 17524 3663 3750 6470 6470 0.019334810348595965 DEKSIITY 8 Unmodified _DEKSIITY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant;ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4 nc|ENSG00000178209|Q15149|PLEC;ENSG00000115306|ENST00000356805|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000160460|Q9H254-2|SPTBN4 nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 484.7506408691406 2 484.75039 967.486227 NaN NaN NaN NaN NaN NaN NaN 48.471 1 43.101 42.601 43.601 -5.3704 0 0 0 0.27899 1 30197 30197 65.235 23.14 1 5498 16412;3108;8374;1020;6730 3664 3751 6471 6471 0.0011835507808655166 DELERALH 8 Unmodified _DELERALH_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MSMS AL20221201_MKP_PDAC_01 4 491.7532043457031 2 491.751256 981.487959 NaN NaN NaN NaN NaN NaN NaN 33.089 1 29.232 28.732 29.732 -3.8562 0 0 0 0.92452 1 18945 18945 15.847 0 1 5499 8479 3665 3752 6472 6472 -0.0035259111328969084 DELPQLFQ 8 Unmodified _DELPQLFQ_ 0 0 0 nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6 nc|ENSG00000162591|O75095-2|MEGF6 nc|ENSG00000162591|O75095-2|MEGF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2507629394531 2 495.250557 988.486562 -0.034822 -1.7246E-05 0.76267 0.00037771 0.72785 0.00036047 495.25077488120235 71.745 0.33525 71.745 71.548 71.883 0 29 14 3 0 0 0 0.57045 1 39920 39920 28.487 3.813 1 2002000 5500 6876 3666 3753 6473 6473 -0.008142252020320484 DELRPAPTQVE 11 Unmodified _DELRPAPTQVE_ 0 0 0 REV__ENST00000425673.5_1_19:39903285-39903747:+|nuORF REV__ENST00000425673.5_1_19:39903285-39903747:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.0441589355469 3 418.882337 1253.62518 0.46329 0.00019407 2.3582 0.0009878 2.8215 0.0011819 418.882850759436 23.396 0.16634 20.617 20.572 20.738 -2.7784 11 9 2 0 0 0 0.29597 1 12680 12680 5.5233 5.0688 1 1662500 + 5501 26898 3667 3754 6474 6474 0.0085127297559211 DELYMTKS 8 Unmodified _DELYMTKS_ 0 0 0 REV__nc|ENSG00000175582|P20340-3|RAB6A REV__nc|ENSG00000175582|P20340-3|RAB6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.4475708007812 1 986.449924 985.442648 -0.044812 -4.4205E-05 -1.6775 -0.0016547 -1.7223 -0.0016989 986.448140998865 65.461 0.27644 65.461 65.32 65.597 0 23 10 3 0 0 0 0.80722 1 36581 36581 2.3027 0 1 1870000 + 5502 20866 3668 3755 6475 6475 -0.05065577690686496 DEMDDDDDDDD 11 Unmodified _DEMDDDDDDDD_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.6755981445312 2 657.675341 1313.33613 NaN NaN NaN NaN NaN NaN NaN 2.8731 1 2.8011 2.3011 3.3011 -0.072029 0 0 0 0.9435 1 1419 1419 0 0 1 5503 2616 3669 3756 6476 6476 -0.30800494295158387 DEMGSWARGR 10 Unmodified _DEMGSWARGR_ 0 0 0 ENST00000574857.1_1_17:2276102-2276510:+|nuORF ENST00000574857.1_1_17:2276102-2276510:+|nuORF ENST00000574857.1_1_17:2276102-2276510:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8443603515625 3 388.84534 1163.51419 -0.434 -0.00016876 -2.8378 -0.0011034 -3.2718 -0.0012722 388.84424903532863 24.687 0.089371 24.687 24.65 24.739 0 7 4 2 0 0 0 0.71413 1 12647 12647 0.56317 0.21254 1 339470 5504 15511 3670 3757 6477 6477 -0.061026452134683495 DEMHTLLQL 9 Unmodified _DEMHTLLQL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000556631.1_1_14:56138241-56138388:+|nuORF;ENST00000334975.13_1_14:56137461-56138388:+|nuORF nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2755737304688 2 550.276249 1098.53795 0.36997 0.00020359 -0.23533 -0.0001295 0.13464 7.4091E-05 550.276374963366 84.531 0.34624 84.531 84.357 84.704 0 52 16 4 0 0 0 0.32235 2 46810 46810;46911 23.148 13.801 1 3257000 5505 3967 3671 3758 6478;6479 6478 -0.0073822449962790415 DEMHTLLQL 9 Unmodified _DEMHTLLQL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000556631.1_1_14:56138241-56138388:+|nuORF;ENST00000334975.13_1_14:56137461-56138388:+|nuORF nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.275390625 2 550.276249 1098.53795 0.51879 0.00028548 -1.2837 -0.00070641 -0.76495 -0.00042093 550.2749760237923 85.053 0.20447 84.551 84.409 84.614 -0.5015 16 9 2 0 0 0 0.32235 1 46536 46536 23.148 11.508 1 840230 5506 3967 3671 3758 6480 6480 -0.0073822449962790415 DEMKNLKNV 9 Unmodified _DEMKNLKNV_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7802734375 2 545.781699 1089.54884 NaN NaN NaN NaN NaN NaN NaN 34.07 1 34.07 33.57 34.57 0 0 0 0 0.29524 1 17919 17919 25.399 0 1 5507 9690 3672 3759 6481 6481 0.007651778746094351 DENLLLHRL 9 Unmodified _DENLLLHRL_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8810424804688 3 374.880379 1121.61931 0.14257 5.3447E-05 -0.38834 -0.00014558 -0.24577 -9.2134E-05 374.8803121368346 39.387 0.28401 39.387 39.224 39.508 0 32 13 3 0 0 0 0.16226 1 21066 21066 19.362 0.98885 1 7096400 + 5508 19457 3673 3760 6482 6482 0.06336219254603748 DENLLLHRL 9 Unmodified _DENLLLHRL_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.880379 1121.61931 0.14257 5.3447E-05 -0.38834 -0.00014558 -0.24577 -9.2134E-05 374.8803121368346 39.387 0.28401 39.387 39.224 39.508 0 0.049587 -7.8083E-05 NaN 19.362 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7096400 + 5509 19457 3673 3760 0.06336219254603748 DENLLLHRL 9 Unmodified _DENLLLHRL_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 374.880379 1121.61931 -0.042774 -1.6035E-05 0.93321 0.00034984 0.89044 0.00033381 374.88046926584855 39.585 0.11052 39.288 39.197 39.308 -0.29716 -0.049587 0.0014082 NaN 19.362 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 790930 + 5510 19457 3673 3760 0.06336219254603748 DENLLQMVL 9 Unmodified _DENLLQMVL_ 0 0 0 REV__ENSG00000118507|ENST00000431975|AKAP7 REV__ENSG00000118507|ENST00000431975|AKAP7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.0284729003906 3 358.854842 1073.5427 -0.3332 -0.00011957 -0.88087 -0.0003161 -1.2141 -0.00043567 359.18861689851883 23.893 0.16506 23.893 23.771 23.936 0 9 7 2 0 0 0 0.21834 1 12146 12146 0.96228 0 1 168840 + 5511 19156 3674 3761 6483 6483 0.008866596431289508 DENPEQIYTAV 11 Unmodified _DENPEQIYTAV_ 0 0 0 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.7966918945312 2 639.796057 1277.57756 -0.49606 -0.00031738 1.3339 0.0008534 0.83779 0.00053602 639.7971246461835 33.663 0.50579 33.504 33.27 33.776 -0.15918 41 20 3 0 0 0 0.69316 2 17516 17516;17625 4.897 4.897 1 3159700 + 5512 23818 3675 3762 6484;6485 6484 -0.050124260152415445 DENPEQIYTAV 11 Unmodified _DENPEQIYTAV_ 0 0 0 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 639.796057 1277.57756 0.076199 4.8752E-05 -0.86424 -0.00055294 -0.78804 -0.00050419 639.7951986388438 33.414 0.20858 33.442 33.253 33.461 0.028934 -0.030597 -0.0026145 NaN 4.897 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1467400 + 5513 23818 3675 3762 -0.050124260152415445 DEPHAILY 8 Unmodified _DEPHAILY_ 0 0 0 REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2394104003906 2 479.23745 956.460347 0.85998 0.00041214 0.39525 0.00018942 1.2552 0.00060155 479.2374992465305 45.648 0.30964 40.693 40.613 40.922 -4.9549 30 20 2 0 0 0 0.50586 1 28124 28124 34.187 6.5585 1 8383500 + 5514 24848 3676 3763 6486 6486 -0.019624943735152556 DEPHAILY 8 Unmodified _DEPHAILY_ 0 0 0 REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF REV__ENST00000242848.8_2_13:46619177-46626639:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.6959228515625 2 479.23745 956.460347 0.85998 0.00041214 0.39525 0.00018942 1.2552 0.00060155 479.2374992465305 45.648 0.30964 40.693 40.613 40.922 -4.9549 30 20 2 0 0 0 8.7369 1 28214 28214 19.439 10.846 1 8383500 + 5515 24848 3676 3763 6487 6487 -0.019624943735152556 DEPPPAQV 8 Unmodified _DEPPPAQV_ 0 0 0 REV__nc|ENSG00000013725|P30203-6|CD6 REV__nc|ENSG00000013725|P30203-6|CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4114379882812 1 852.409774 851.402498 0.68375 0.00058284 -0.17263 -0.00014715 0.51112 0.00043568 852.4096413032817 54.306 0.33216 54.306 54.173 54.505 0 20 14 2 0 0 0 0.63229 1 30119 30119 23.148 2.6948 1 946840 + 5516 17078 3677 3764 6488 6488 -0.029147562989578546 DEPQLLKMS 9 Unmodified _DEPQLLKMS_ 0 0 0 ENST00000496769.1_1_1:157670257-157670530:-|nuORF ENST00000496769.1_1_1:157670257-157670530:-|nuORF ENST00000496769.1_1_1:157670257-157670530:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7725219726562 2 530.7708 1059.52705 0.43113 0.00022883 -1.1292 -0.00059935 -0.69808 -0.00037052 530.7702239921774 48.127 0.49685 48.088 47.849 48.346 -0.038643 50 16 4 0 0 0 0.38785 1 26016 26016 13.042 0.51092 1 16062000 5517 14384 3678 3765 6489 6489 -0.00033626873914727184 DEPQLLSSSHL 11 Unmodified _DEPQLLSSSHL_ 0 0 0 REV__ENSG00000186532|ENST00000305513|SMYD4 REV__ENSG00000186532|ENST00000305513|SMYD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2469177246094 3 409.20682 1224.59863 -0.86117 -0.0003524 4.4842 0.001835 3.623 0.0014826 409.2086991907215 30.307 0.10138 30.307 30.222 30.324 0 7 4 2 0 0 0 0.30269 1 15712 15712 6.2344 2.1177 1 607760 + 5518 23580 3679 3766 6490 6490 -0.004684159157022805 DEPSQHCHSVG 11 Unmodified _DEPSQHCHSVG_ 0 0 0 REV__ENST00000555968.1_1_14:24034769-24034943:+|nuORF REV__ENST00000555968.1_1_14:24034769-24034943:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8507385253906 3 399.164738 1194.47238 NaN NaN NaN NaN NaN NaN NaN 57.33 1 57.33 56.83 57.83 0 0 0 0 0.93933 1 31901 31901 1.2148 0.4383 1 + 5519 28778 3680 3767 6491 6491 -0.11707245692673496 DEPWGGER 8 Unmodified _DEPWGGER_ 0 0 0 REV__ENST00000330720.6_1_19:48885855-48886071:-|nuORF REV__ENST00000330720.6_1_19:48885855-48886071:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2077331542969 2 473.206681 944.398809 NaN NaN NaN NaN NaN NaN NaN 50.342 1 49.95 49.45 50.45 -0.3923 0 0 0 0.97444 1 27107 27107 2.5775 0 1 + 5520 25594 3681 3768 6492 6492 -0.07561426072800259 DEQLIPQLGY 10 Unmodified _DEQLIPQLGY_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.299072265625 2 588.300778 1174.587 0.11872 6.9842E-05 0.30435 0.00017905 0.42307 0.00024889 588.3010283420423 58.927 0.19416 58.927 58.809 59.004 0 12 8 2 0 0 0 0.69064 1 32809 32809 3.9444 0 1 1155400 5521 7321 3682 3769 6493 6493 0.006693870609524311 DERALHGVCL 10 Unmodified _DERALHGVCL_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.27880859375 2 556.77949 1111.54443 1.1398 0.0006346 0.15556 8.6614E-05 1.2953 0.00072121 556.779422136712 50.952 0.34525 45.303 45.134 45.479 -5.649 36 20 2 0 0 0 0.23227 1 32055 32055 10.824 1.4765 1 58377000 + 5522 22194 3683 3770 6494 6494 -0.006882865482793932 DEREIKSPY 9 Unmodified _DEREIKSPY_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-6|TTN REV__nc|ENSG00000155657|Q8WZ42-6|TTN MSMS AL20221201_MKP_PDAC_01 4 568.78466796875 2 568.782753 1135.55095 NaN NaN NaN NaN NaN NaN NaN 83.027 1 76.851 76.351 77.351 -6.1757 0 0 0 0.56093 1 54574 54574 13.906 2.2658 1 + 5523 29718 3684 3771 6495 6495 -0.011400701159118398 DERKLFNHL 9 Unmodified _DERKLFNHL_ 0 0 0 nc|ENSG00000127325|Q8N1M1-1|BEST3;ENSG00000127325|ENST00000330891|BEST3;nc|ENSG00000127325|Q8N1M1-5|BEST3;nc|ENSG00000127325|Q8N1M1-6|BEST3 nc|ENSG00000127325|Q8N1M1-1|BEST3 nc|ENSG00000127325|Q8N1M1-1|BEST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5462951660156 3 391.212128 1170.61456 1.4943 0.0005846 -0.75522 -0.00029545 0.73911 0.00028915 391.21178518590426 21.47 0.2848 18.735 18.65 18.935 -2.7348 47 25 3 0 0 0 0.34999 1 11487 11487 10.151 2.2052 1 4988900 5524 3997 3685 3772 6496 6496 0.03607335111860266 DESDYGKW 8 Unmodified _DESDYGKW_ 0 0 0 REV__ENSG00000153046|ENST00000397588|CDYL REV__ENSG00000153046|ENST00000397588|CDYL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7293395996094 2 500.206347 998.39814 0.39431 0.00019724 -2.0747 -0.0010378 -1.6804 -0.00084055 500.20497028806335 39.677 0.52956 39.677 39.263 39.792 0 32 25 2 0 0 0 8.7369 1 21150 21150 5.2307 0 1 2516500 + 5525 21148 3686 3773 6497 6497 -0.10112265512520935 DESEDHDDPD 10 Unmodified _DESEDHDDPD_ 0 0 0 ENSG00000127083|ENST00000375550|OMD ENSG00000127083|ENST00000375550|OMD ENSG00000127083|ENST00000375550|OMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.1942138671875 2 587.194362 1172.37417 NaN NaN NaN NaN NaN NaN NaN 7.1478 1 7.0631 6.5631 7.5631 -0.08463 0 0 0 1.0061 1 3517 3517 0 0 1 5526 3988 3687 3774 6498 6498 -0.20512195527521726 DESYLLQVL 9 Unmodified _DESYLLQVL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7412719726562 2 540.284597 1078.55464 0.23831 0.00012875 1.1746 0.0006346 1.4129 0.00076335 540.2852202263308 76.576 0.24357 76.576 76.419 76.663 0 14 9 2 0 0 0 0.19613 1 42589 42589 12.532 3.9383 1 336230 5527 7311 3688 3775 6499 6499 0.018505996579506245 DETMHWPSK 9 Unmodified _DETMHWPSK_ 0 0 0 REV__ENST00000266069.4_1_20:61578995-61579157:+|nuORF REV__ENST00000266069.4_1_20:61578995-61579157:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5037231445312 3 377.502691 1129.48624 1.6234 0.00061285 0.7415 0.00027992 2.3649 0.00089277 377.50289740868317 55.1 0.3639 49.179 49.003 49.366 -5.9211 55 22 3 0 0 0 0.56345 1 34937 34937 2.086 0 1 43132000 + 5528 25100 3689 3776 6500 6500 -0.07331968193557259 DETPFRQSC 9 Unmodified _DETPFRQSC_ 0 0 0 REV__ENST00000469531.1_1_7:28448994-28553087:+|nuORF REV__ENST00000469531.1_1_7:28448994-28553087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7343139648438 2 541.732206 1081.44986 0.16924 9.1683E-05 0.47074 0.00025502 0.63998 0.0003467 541.7324486980216 62.459 0.38131 62.459 62.274 62.655 0 44 24 2 0 0 0 0.49272 1 34791 34791 7.9102 0 1 22773000 + 5529 20844 3690 3777 6501 6501 -0.08760845090250768 DETSGEDEP 9 Unmodified _DETSGEDEP_ 0 0 0 REV__ENSG00000204065|ENST00000372680|TCEAL5 REV__ENSG00000204065|ENST00000372680|TCEAL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.6802368164062 2 489.680359 977.346164 0.96661 0.00047333 -0.69984 -0.0003427 0.26678 0.00013064 489.67989294136675 49.855 0.32986 49.462 49.277 49.607 -0.3923 41 16 3 0 0 0 0.59218 1 26885 26885 1.8442 0.19162 1 11674000 + 5530 24137 3691 3778 6502 6502 -0.14341473716945075 DETSYRQE 8 Unmodified _DETSYRQE_ 0 0 0 ENSG00000010626|ENST00000443597|LRRC23 ENSG00000010626|ENST00000443597|LRRC23 ENSG00000010626|ENST00000443597|LRRC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7219848632812 2 514.219985 1026.42542 0.26216 0.00013481 -0.43294 -0.00022263 -0.17078 -8.7818E-05 514.2197834785364 17.374 0.49523 17.379 17.036 17.532 0.0050564 100 38 3 0 0 0 0.70294 1 8602 8602 16.942 2.104 1 5559800 5531 425 3692 3779 6503 6503 -0.08673781972129291 DEVGQPGRSQF 11 Unmodified _DEVGQPGRSQF_ 0 0 0 REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.2871704101562 2 610.288734 1218.56291 0.7408 0.0004521 -2.0365 -0.0012428 -1.2957 -0.00079072 610.2873998967568 50.763 0.26791 50.349 50.17 50.438 -0.41351 29 12 3 0 0 0 0.59689 1 27317 27317 11.495 0.67078 1 3189100 + 5532 20408 3693 3780 6504 6504 -0.037624533727239395 DEVLGIWSRH 10 Unmodified _DEVLGIWSRH_ 0 0 0 ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3|EML5 ENSG00000165521|ENST00000554922|EML5 ENSG00000165521|ENST00000554922|EML5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8775329589844 3 404.543767 1210.60947 0.61534 0.00024893 -1.8959 -0.00076698 -1.2806 -0.00051805 404.8771659874733 27.192 0.46477 24.156 23.774 24.239 -3.0365 31 21 2 0 0 0 0.65282 1 15086 15086 4.7159 0 1 72899000 5533 7354 3694 3781 6505 6505 0.012590312492193334 DEVPEAADR 9 Unmodified _DEVPEAADR_ 0 0 0 REV__nc|ENSG00000165752|Q86UX6-2|STK32C REV__nc|ENSG00000165752|Q86UX6-2|STK32C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7706604003906 2 501.230353 1000.44615 0.60362 0.00030255 -1.8906 -0.00094761 -1.287 -0.00064506 501.7305993248075 74.636 0.13234 74.636 74.54 74.672 0 6 5 2 0 0 0 0.21834 1 41488 41488 1.8442 0 1 335270 + 5534 22047 3695 3782 6506 6506 -0.05405191592478786 DEVPVQGVAI 10 Unmodified _DEVPVQGVAI_ 0 0 0 nc|ENSG00000067191|Q02641-2|CACNB1;nc|ENSG00000067191|Q02641-3|CACNB1;ENSG00000067191|ENST00000394303|CACNB1;ENST00000536613.6_1_17:37342683-37349731:-|nuORF nc|ENSG00000067191|Q02641-2|CACNB1 nc|ENSG00000067191|Q02641-2|CACNB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7764892578125 2 513.776939 1025.53933 NaN NaN NaN NaN NaN NaN NaN 93.072 1 93.072 92.572 93.572 0 0 0 0 0.91523 1 51460 51460 7.2892 2.5332 1 5535 953 3696 3783 6507 6507 0.027577328607549134 DEVTDLLLI 9 Unmodified _DEVTDLLLI_ 0 0 0 REV__ENST00000375254.7_1_1:19500035-19500110:-|nuORF REV__ENST00000375254.7_1_1:19500035-19500110:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2650756835938 2 515.786973 1029.55939 0.15262 7.8718E-05 -0.49426 -0.00025493 -0.34164 -0.00017621 515.7862616262742 59.911 0.21218 59.421 59.333 59.545 -0.49079 12 10 2 0 0 0 0.18882 1 32568 32568 15.847 4.2069 1 1314000 + 5536 26199 3697 3784 6508 6508 0.04579483800739581 DEVWREMRWIM 11 Unmodified _DEVWREMRWIM_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.5798950195312 3 517.579606 1549.71699 0.15629 8.0891E-05 1.6494 0.00085368 1.8057 0.00093457 517.5802961029884 34.66 0.15176 34.687 34.561 34.713 0.027401 11 6 2 0 0 0 0.74429 1 18277 18277 0.094841 0.011491 1 2253200 5537 6282 3698 3785 6509 6509 -0.03588083203226233 DEVYNVLHL 9 Unmodified _DEVYNVLHL_ 0 0 0 REV__ENSG00000153487|ENST00000333219|ING1 REV__ENSG00000153487|ENST00000333219|ING1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7600708007812 2 551.282389 1100.55022 0.39194 0.00021607 0.92062 0.00050752 1.3126 0.00072359 551.2828732201151 79.511 0.2409 79.511 79.372 79.613 0 15 9 2 0 0 0 0.20727 1 44201 44201 4.3292 0 1 370110 + 5538 21174 3699 3786 6510 6510 0.003971352350617963 DEWERDLHF 9 Unmodified _DEWERDLHF_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.188232421875 3 416.18776 1245.54145 -0.063858 -2.6577E-05 0.32897 0.00013691 0.26512 0.00011034 416.5220625340568 17.02 0.15744 17.025 16.954 17.112 0.0050564 22 14 2 0 0 0 0.61256 1 8549 8549 0.26902 0.1097 1 655990 5539 7615 3700 3787 6511 6511 -0.07149838401437592 DEWPQDRCL 9 Unmodified _DEWPQDRCL_ 0 0 0 REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF REV__ENST00000380995.5_1_22:47570871-47571156:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.8387145996094 3 387.837962 1160.49206 NaN NaN NaN NaN NaN NaN NaN 63.378 1 57.202 56.702 57.702 -6.1757 0 0 0 0.76439 1 40961 40961 4.5289 0.65253 1 + 5540 26323 3701 3788 6512 6512 -0.0817686968189264 DEWWWDCLE 9 Unmodified _DEWWWDCLE_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8340759277344 3 427.834218 1280.48082 -1.0916 -0.00046703 -0.4594 -0.00019655 -1.551 -0.00066358 427.83406946311976 32.643 0.20123 32.643 32.532 32.733 0 25 10 3 0 0 0 0.49272 1 17045 17045 4.897 0 1 7600200 5541 712 3702 3789 6513 6513 -0.14819691776028776 DEYTDPDIY 9 Unmodified _DEYTDPDIY_ 0 0 0 REV__nc|ENSG00000080224|Q9UF33|EPHA6 REV__nc|ENSG00000080224|Q9UF33|EPHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7307739257812 2 565.729852 1129.44515 0.68254 0.00038613 0.40941 0.00023161 1.092 0.00061775 565.7304181741036 36.801 0.34884 36.801 36.588 36.936 0 34 16 3 0 0 0 0.49272 1 19515 19515 7.9102 0.62092 1 2289200 + 5542 17661 3703 3790 6514 6514 -0.11439450752027369 DEYTNPGTY 9 Unmodified _DEYTNPGTY_ 0 0 0 REV__ENSG00000087258|ENST00000262493|GNAO1 REV__ENSG00000087258|ENST00000262493|GNAO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8275756835938 3 353.8137 1058.41927 0.61385 0.00021719 -0.56179 -0.00019877 0.052061 1.842E-05 353.81445295834055 54.076 0.32378 54.076 53.923 54.246 0 46 14 4 0 0 0 0.21302 1 29977 29977 3.5871 0 1 4609200 + 5543 17781 3704 3791 6515 6515 -0.10760300203651241 DFAAAAFVKSV 11 Unmodified _DFAAAAFVKSV_ 0 0 0 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.758544921875 2 563.300581 1124.58661 0.86777 0.00048881 -0.042125 -2.3729E-05 0.82564 0.00046509 563.300658982961 81.885 0.23441 81.39 81.236 81.471 -0.4952 14 8 2 0 0 0 0.28953 1 44844 44844 8.7454 2.0222 1 408330 + 5544 23050 3705 3792 6516 6516 0.02930012131719195 DFAYCWENF 9 Unmodified _DFAYCWENF_ 0 0 0 ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000243811|ENST00000216099|APOBEC3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7306518554688 2 597.731674 1193.4488 0.42911 0.00025649 -2.4773 -0.0014808 -2.0482 -0.0012243 597.7303468874711 79.028 0.22464 78.542 78.394 78.619 -0.48596 14 9 2 0 0 0 0.58865 1 43304 43304 2.0598 1.2661 1 903810 5545 10717 3706 3793 6517 6517 -0.14019059459178607 DFCAGPAY 8 Unmodified _DFCAGPAY_ 0 0 0 ENST00000483929.1_1_2:158291208-158300532:-|nuORF;ENST00000462109.1_1_2:158290860-158300532:-|nuORF;ENSG00000115165|ENST00000264192|CYTIP ENST00000483929.1_1_2:158291208-158300532:-|nuORF ENST00000483929.1_1_2:158291208-158300532:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.335693359375 1 843.334166 842.32689 -0.062666 -5.2848E-05 -0.14906 -0.00012571 -0.21173 -0.00017855 843.3343273395825 90.417 0.3158 89.922 89.758 90.074 -0.49457 23 14 2 0 0 0 0.80975 1 49390 49390 0.79363 0 1 1017200 5546 3092 3707 3794 6518 6518 -0.10058056750904143 DFCDCIDCF 9 Unmodified _DFCDCIDCF_ 0 0 0 REV__nc|ENSG00000130779|P30622-2|CLIP1 REV__nc|ENSG00000130779|P30622-2|CLIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.6767578125 2 540.677196 1079.33984 NaN NaN NaN NaN NaN NaN NaN 51.475 1 51.061 50.561 51.561 -0.41351 0 0 0 0.84369 1 27755 27755 2.3027 0 1 + 5547 19744 3708 3795 6519 6519 -0.1966572974531573 DFCFLVHI 8 Unmodified _DFCFLVHI_ 0 0 0 nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7060546875 2 497.246763 992.478974 1.2237 0.00060846 0.41181 0.00020477 1.6355 0.00081323 497.2466446856003 55.326 0.27473 49.405 49.285 49.56 -5.9211 25 16 2 0 0 0 8.7369 1 35308 35308 20.871 3.7847 1 12376000 5548 6559 3709 3796 6520 6520 -0.017566560033174028 DFCRGDGRE 9 Unmodified _DFCRGDGRE_ 0 0 0 ENST00000356462.10_1_18:56063506-56063713:+|nuORF ENST00000356462.10_1_18:56063506-56063713:+|nuORF ENST00000356462.10_1_18:56063506-56063713:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.725341796875 2 527.722172 1053.42979 NaN NaN NaN NaN NaN NaN NaN 78.665 1 78.665 78.165 79.165 0 0 0 0 0.83812 1 43711 43711 0 0 1 5549 12091 3710 3797 6521 6521 -0.09478596030203335 DFCSAEFHK 9 Unmodified _DFCSAEFHK_ 0 0 0 REV__ENSG00000173451|ENST00000308086|THAP2 REV__ENSG00000173451|ENST00000308086|THAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2589721679688 2 542.231842 1082.44913 -0.27359 -0.00014835 0.8318 0.00045103 0.55821 0.00030268 542.2321189492891 48.866 0.19872 48.866 48.675 48.874 0 12 8 2 0 0 0 0.209 1 26846 26846 7.2892 0 1 1906700 + 5550 22731 3711 3798 6522 6522 -0.08879639739325285 DFCVLCLCAY 10 Unmodified _DFCVLCLCAY_ 0 0 0 ENSG00000156509|ENST00000428847|FBXO43 ENSG00000156509|ENST00000428847|FBXO43 ENSG00000156509|ENST00000428847|FBXO43 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.76416015625 2 575.242506 1148.47046 0.89582 0.00051532 0.79264 0.00045596 1.6885 0.00097128 575.2433128002516 47.734 0.38781 47.734 47.644 48.032 0 26 18 2 0 0 0 0.22667 1 26141 26141 15.847 5.7733 1 4542000 5551 6462 3712 3799 6523 6523 -0.09783714026457346 DFDARPPWWV 10 Unmodified _DFDARPPWWV_ 0 0 0 REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF REV__ENST00000431582.6_1_X:2527436-2533991:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8097534179688 2 644.809105 1287.60366 NaN NaN NaN NaN NaN NaN NaN 87.54 1 87.54 87.04 88.04 0 0 0 0 1.0019 1 48472 48472 0.45834 0 1 + 5552 26981 3713 3800 6524 6524 -0.02864067262453318 DFDEYAAQI 9 Unmodified _DFDEYAAQI_ 0 0 0 REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2366333007812 2 536.235104 1070.45566 NaN NaN NaN NaN NaN NaN NaN 65.842 1 65.842 65.342 66.342 0 0 0 0 0.7243 1 36723 36723 8.5933 0.68312 1 + 5553 19135 3714 3801 6525 6525 -0.07675423306955054 DFDKYIAY 8 Unmodified _DFDKYIAY_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D ENSG00000186280|ENST00000335080|KDM4D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7446899414062 2 517.745108 1033.47566 NaN NaN NaN NaN NaN NaN NaN 90.881 1 90.386 89.886 90.886 -0.49457 0 0 0 0.92941 1 49678 49678 14.838 0 1 5554 9466 3715 3802 6526 6526 -0.039736275763289086 DFDMTLSRF 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ DFDM(1)TLSRF DFDM(93)TLSRF 0 0 1 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.255126953125 2 574.258056 1146.50156 0.54941 0.00031551 -0.86508 -0.00049678 -0.31567 -0.00018128 574.2576163475293 58.085 0.4729 58.085 57.817 58.29 0 55 18 5 0 0 0 0.0082475 2 32269 32269;32375 92.653 63.572 1 32251000 5555 3651 3716 3803 6527;6528 6527 640 -0.0658310139635887 DFDMTLSRF 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ DFDM(1)TLSRF DFDM(93)TLSRF 0 0 1 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2574462890625 2 574.258056 1146.50156 0.37643 0.00021617 -0.60145 -0.00034539 -0.22502 -0.00012922 574.257897889227 58.757 0.41035 58.757 58.535 58.945 0 55 17 5 0 0 0 0.0082475 1 32661 32661 92.653 69.917 1 29182000 5556 3651 3716 3803 6529 6529 640 -0.0658310139635887 DFDMTLSRF 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ DFDM(1)TLSRF DFDM(76)TLSRF 0 0 1 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2572021484375 2 574.258056 1146.50156 0.42716 0.0002453 -0.92176 -0.00052933 -0.49461 -0.00028403 574.2575641888429 58.654 0.34712 58.163 57.963 58.31 -0.49079 50 16 4 0 0 0 0.011671 2 31836 31836;31934 75.761 58.819 1 28414000 5557 3651 3716 3803 6530;6531 6530 640 -0.0658310139635887 DFDMTLSRF 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ DFDM(1)TLSRF DFDM(76)TLSRF 0 0 1 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2577514648438 2 574.258056 1146.50156 0.46236 0.00026552 0.094847 5.4467E-05 0.55721 0.00031998 574.2583291031369 59.299 0.38289 58.808 58.604 58.987 -0.49079 54 17 5 0 0 0 0.011671 1 32199 32199 75.761 55.307 1 23438000 5558 3651 3716 3803 6532 6532 640 -0.0658310139635887 DFDMTLSRF 9 Oxidation (M) _DFDM(Oxidation (M))TLSRF_ DFDM(1)TLSRF DFDM(73)TLSRF 0 0 1 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2579956054688 2 574.258056 1146.50156 0.5484 0.00031492 -0.58383 -0.00033527 -0.035431 -2.0347E-05 574.2580118562418 65.319 0.47623 59.143 58.868 59.344 -6.1757 65 26 3 0 0 0 0.012668 2 42413 42289;42413 72.968 58.13 1 38369000 5559 3651 3716 3803 6533;6534 6534 640 -0.0658310139635887 DFDMTLSRF 9 Unmodified _DFDMTLSRF_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.6072387695312 2 566.260599 1130.50665 NaN NaN NaN NaN NaN NaN NaN 70.745 1 70.745 70.245 71.245 0 0 0 0 0.32622 1 39413 39413 23.79 15.88 1 5560 3651 3716 3804 6535 6535 -0.05338797533727302 DFDMTLSRF 9 Unmodified _DFDMTLSRF_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2598266601562 2 566.260599 1130.50665 0.65218 0.00036931 -0.063778 -3.6115E-05 0.58841 0.00033319 566.2605387119963 71.303 0.43453 70.826 70.611 71.045 -0.47736 51 18 4 0 0 0 0.0082353 1 38976 38976 96.111 65.886 1 9609600 5561 3651 3716 3804 6536 6536 -0.05338797533727302 DFDMTLSRF 9 Unmodified _DFDMTLSRF_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000393910.5_1_17:39983688-39992209:-|nuORF;ENST00000469698.5_1_17:39981777-39991902:-|nuORF;nc|ENSG00000141698|Q969T7-2|NT5C3B;ENSG00000141698|ENST00000435506|NT5C3B nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.260986328125 2 566.260599 1130.50665 1.4768 0.00083628 0.13123 7.4311E-05 1.6081 0.00091059 566.2608354620113 79.548 0.49477 73.373 73.267 73.762 -6.1757 39 29 2 0 0 0 0.017075 2 52186 52186;52351 66.457 43.308 1 11122000 5562 3651 3716 3804 6537;6538 6537 -0.05338797533727302 DFDQLLEAL 9 Unmodified _DFDQLLEAL_ 0 0 0 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.268798828125 2 532.268947 1062.52334 0.30259 0.00016106 -0.7567 -0.00040277 -0.45412 -0.00024171 532.2686160610479 67.108 0.63445 66.625 66.254 66.888 -0.48308 52 29 2 0 0 0 0.19127 1 36580 36580 24.021 3.1494 1 2419300 5563 2510 3717 3805 6539 6539 -0.005419733761300449 DFDSVSSIM 9 Oxidation (M) _DFDSVSSIM(Oxidation (M))_ DFDSVSSIM(1) DFDSVSSIM(51) 0 0 1 ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.71728515625 2 508.71569 1015.41683 0.94206 0.00047924 0.126 6.4099E-05 1.0681 0.00054334 508.7157475170353 46.093 0.2927 46.093 45.918 46.21 0 26 13 3 0 0 0 0.038285 1 25135 25135 50.855 26.181 1 3548900 5564 8793 3718 3806 6540 6540 1483 -0.09026471932963887 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7523193359375 2 506.752933 1011.49131 0.41567 0.00021064 -1.0318 -0.00052289 -0.61617 -0.00031224 506.7522854860267 90.294 1.3275 90.294 90.054 91.382 0 172 72 4 0 0 0 0.042911 6 50039 49845;49939;50039;50142;50240;50338 48.346 27.475 1 3112900 5565 8296;16388 3719 3807 6541;6542;6543;6544;6545;6546 6543 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1012.500793457031 1 1012.49859 1011.49131 -0.18724 -0.00018958 -1.8215 -0.0018443 -2.0088 -0.0020339 1012.4961135414136 90.363 0.6938 90.363 90.095 90.788 0 63 37 2 0 0 0 0.21052 1 50214 50214 6.7232 4.4204 1 1334000 5566 8296;16388 3719 3807 6547 6547 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7532653808594 2 506.752933 1011.49131 0.07684 3.8939E-05 -1.3069 -0.00066229 -1.2301 -0.00062335 506.75230692744475 90.897 1.2769 90.402 90.139 91.416 -0.49457 167 78 3 0 0 0 0.0083087 5 49799 49703;49799;49901;49999;50128 97.075 66.85 1 6833000 5567 8296;16388 3719 3807 6548;6549;6550;6551;6552 6549 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7518920898438 2 506.752933 1011.49131 0.055853 2.8303E-05 0.31798 0.00016114 0.37383 0.00018944 506.75271964330125 92.437 0.38033 91.956 91.632 92.012 -0.48092 25 16 2 0 0 0 0.23158 2 50409 50409;50539 20.454 11.106 1 347620 5568 8296;16388 3719 3807 6553;6554 6553 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7525329589844 2 506.752933 1011.49131 NaN NaN NaN NaN NaN NaN NaN 92.026 1 91.546 91.046 92.046 -0.48092 0 0 0 0.39043 1 50304 50304 20.454 11.106 1 5569 8296;16388 3719 3807 6555 6555 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7531433105469 2 506.752933 1011.49131 0.73745 0.0003737 -0.35282 -0.00017879 0.38463 0.00019491 506.7527935897913 90.535 0.47142 90.577 90.302 90.773 0.042183 25 16 2 0 0 0 0.042911 1 50308 50308 48.346 18.121 1 4568100 5570 8296;16388 3719 3807 6556 6556 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7530822753906 2 506.752933 1011.49131 0.3391 0.00017184 0.30674 0.00015544 0.64585 0.00032728 506.7529983238813 99.051 0.71754 92.875 92.648 93.365 -6.1757 95 46 4 0 0 0 0.016184 2 65893 65719;65893 67.344 40.46 1 182410000 5571 8296;16388 3719 3807 6557;6558 6558 -0.013973410592939217 DFDVAVVTF 9 Unmodified _DFDVAVVTF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1012.49859 1011.49131 0.3249 0.00032896 -1.3782 -0.0013955 -1.0533 -0.0010665 1012.4970812005896 90.882 0.61575 90.387 90.316 90.932 -0.49457 0.01215 0.00025047 NaN 6.7232 59 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1581200 5572 8296;16388 3719 3807 -0.013973410592939217 DFEAAPTP 8 Unmodified _DFEAAPTP_ 0 0 0 ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF ENST00000472623.1_1_X:69646726-69652182:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 847.38232421875 1 847.383225 846.375948 -0.017122 -1.4509E-05 -0.18686 -0.00015834 -0.20398 -0.00017285 847.3829467277556 69.731 0.28198 69.731 69.557 69.839 0 18 13 2 0 0 0 0.31612 1 38821 38821 53.576 15.424 1 785630 5573 13910 3720 3808 6559 6559 -0.053384451902843466 DFECEEDPF 9 Unmodified _DFECEEDPF_ 0 0 0 nc|ENSG00000165006|Q9NZ09-2|UBAP1;ENSG00000165006|ENST00000297661|UBAP1;nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 nc|ENSG00000165006|Q9NZ09-2|UBAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2730102539062 2 565.70278 1129.39101 0.2107 0.0001192 -0.48286 -0.00027316 -0.27216 -0.00015396 565.7023866199371 69.948 0.29162 69.948 69.775 70.067 0 47 39 2 0 0 0 0.21798 1 38897 38897 2.3027 1.5091 1 4241200 5574 7278 3721 3809 6560 6560 -0.16851366175274052 DFECMFYMT 9 Unmodified _DFECMFYMT_ 0 0 0 REV__nc|ENSG00000118004|Q9BWP8-8|COLEC11 REV__nc|ENSG00000118004|Q9BWP8-8|COLEC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7174072265625 2 593.716321 1185.41809 1.1601 0.0006888 0.72337 0.00042948 1.8835 0.0011183 593.7166796822055 79.467 0.51151 73.292 73.056 73.567 -6.1757 82 29 4 0 0 0 0.55775 1 52091 52091 3.9444 0.66309 1 73202000 + 5575 19131 3722 3810 6561 6561 -0.1672029716007728 DFEEECLEF 9 Unmodified _DFEEECLEF_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7262573242188 2 580.726255 1159.43796 0.28301 0.00016435 -1.983 -0.0011516 -1.7 -0.00098723 580.7259759795975 59.039 0.31579 59.039 58.902 59.217 0 30 13 4 0 0 0 0.41742 1 32872 32872 11.64 0 1 1848000 5576 6083 3723 3811 6562 6562 -0.1353850662410423 DFEFQSQKDER 11 Unmodified _DFEFQSQKDER_ 0 0 0 ENSG00000258405|ENST00000421239|ZNF578 ENSG00000258405|ENST00000421239|ZNF578 ENSG00000258405|ENST00000421239|ZNF578 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.8238525390625 2 714.823138 1427.63172 -0.0094483 -6.7538E-06 0.28811 0.00020595 0.27867 0.0001992 714.8233533280111 92.044 0.32732 92.044 91.905 92.233 0 43 18 3 0 0 0 0.6889 1 50960 50960 5.2969 0 1 839910 5577 10818 3724 3812 6563 6563 -0.06498833863702203 DFELSSNDKL 10 Unmodified _DFELSSNDKL_ 0 0 0 REV__ENST00000568535.1_1_15:73028121-73029372:+|nuORF REV__ENST00000568535.1_1_15:73028121-73029372:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1899108886719 3 389.855787 1166.54553 -0.48725 -0.00018996 0.69455 0.00027077 0.2073 8.0817E-05 389.85560528962014 19.986 0.40842 19.986 19.888 20.296 0 83 41 3 0 0 0 0.6966 1 10059 10059 1.5923 0.39894 1 2920600 + 5578 20473 3725 3813 6564 6564 -0.03107793698382011 DFEPQNHYK 9 Unmodified _DFEPQNHYK_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7645874023438 2 589.26727 1176.51999 0.36198 0.0002133 -3.0563 -0.001801 -2.6943 -0.0015877 589.2652307775103 94.836 0.09848 94.434 94.389 94.487 -0.40263 5 3 2 0 0 0 0.21473 1 51796 51796 4.3292 0.73274 1 218890 + 5579 20929 3726 3814 6565 6565 -0.061212234301592616 DFEQNPDEQDY 11 Unmodified _DFEQNPDEQDY_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.1797485351562 3 467.180999 1398.52117 -0.11281 -5.2705E-05 -2.0608 -0.00096276 -2.1736 -0.0010155 467.1801866383012 26.483 0.27125 26.483 26.343 26.614 0 29 12 3 0 0 0 0.71728 1 13584 13584 2.6312 0.72486 1 2382800 5580 642 3727 3815 6566 6566 -0.16215098642555859 DFETDSDDLI 10 Unmodified _DFETDSDDLI_ 0 0 0 ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2 ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.4989624023438 3 390.499669 1168.47718 1.4922 0.00058271 -3.0156 -0.0011776 -1.5234 -0.0005949 390.4984555408715 101.17 0.12318 94.993 94.923 95.046 -6.1757 12 7 2 0 0 0 0.6606 1 67827 67827 3.8763 1.1411 1 23586000 5581 8341 3728 3816 6567 6567 -0.10032083068881548 DFFDYSKL 8 Unmodified _DFFDYSKL_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7443237304688 2 517.745108 1033.47566 NaN NaN NaN NaN NaN NaN NaN 91.076 1 90.582 90.082 91.082 -0.49457 0 0 0 0.94494 1 49788 49788 11.64 1.4569 1 5582 441 3729 3817 6568 6568 -0.039736275763289086 DFFHDRFCRT 10 Unmodified _DFFHDRFCRT_ 0 0 0 REV__ENST00000411676.6_1_18:55274615-55283204:-|nuORF REV__ENST00000411676.6_1_18:55274615-55283204:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.8917236328125 3 448.536506 1342.58769 NaN NaN NaN NaN NaN NaN NaN 29.185 1 25.884 25.384 26.384 -3.3016 0 0 0 0.88176 1 16362 16362 5.0475 1.2016 1 + 5583 19984 3730 3818 6569 6569 -0.06990096771005483 DFFKERTSF 9 Unmodified _DFFKERTSF_ 0 0 0 ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8611450195312 3 392.860984 1175.56112 0.66159 0.00025991 0.27337 0.0001074 0.93495 0.00036731 392.86111224895956 47.496 0.20169 47.144 47.042 47.244 -0.3526 19 9 3 0 0 0 0.07087 2 25440 25409;25440 37.075 26.924 1 8687600 5584 948 3731 3819 6570;6571 6571 -0.019634623906767956 DFFKERTSF 9 Unmodified _DFFKERTSF_ 0 0 0 ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7886352539062 2 588.787838 1175.56112 0.60559 0.00035656 0.69626 0.00040995 1.3018 0.00076651 588.7878301802447 47.49 0.20169 47.138 47.042 47.244 -0.3526 19 9 3 0 0 0 0.0093064 1 25461 25461 83.429 39.57 1 5814700 5585 948 3731 3819 6572 6572 -0.019634623906767956 DFFKERTSF 9 Unmodified _DFFKERTSF_ 0 0 0 ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8609313964844 3 392.860984 1175.56112 1.064 0.00041802 -0.79155 -0.00031097 0.27249 0.00010705 392.86071543479454 53.032 0.26129 47.228 47.14 47.401 -5.8042 19 14 2 0 0 0 0.024189 1 33465 33465 55.249 41.634 1 24789000 5586 948 3731 3819 6573 6573 -0.019634623906767956 DFFTVPPVF 9 Unmodified _DFFTVPPVF_ 0 0 0 nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 nc|ENSG00000156113|Q12791-5|KCNMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7749633789062 2 534.773668 1067.53278 -0.044546 -2.3822E-05 -1.7199 -0.00091975 -1.7644 -0.00094357 534.7730376250212 51.213 0.23969 51.159 51.026 51.266 -0.053871 18 11 2 0 0 0 0.28047 1 27706 27706 18.135 10.225 1 1627600 5587 6430 3732 3820 6574 6574 0.0017183970003316063 DFFYSRPSF 9 Unmodified _DFFYSRPSF_ 0 0 0 REV__ENSG00000077585|ENST00000366592|GPR137B REV__ENSG00000077585|ENST00000366592|GPR137B MSMS AL20221201_MKP_PDAC_01 4 583.2687377929688 2 583.269281 1164.52401 NaN NaN NaN NaN NaN NaN NaN 101.77 1 95.596 95.096 96.096 -6.1757 0 0 0 0.6032 1 68313 68313 12.532 0 1 + 5588 17615 3733 3821 6575 6575 -0.051671339364247615 DFGAVSWDF 9 Unmodified _DFGAVSWDF_ 0 0 0 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.229248046875 2 522.227082 1042.43961 0.70104 0.0003661 2.3766 0.0012411 3.0776 0.0016072 522.2282716601989 57.6 0.37474 57.6 57.443 57.817 0 29 18 2 0 0 0 0.013323 1 32056 32056 71.134 17.558 1 3678600 5589 8470 3734 3822 6576 6576 -0.0799108475318917 DFGAVSWDF 9 Unmodified _DFGAVSWDF_ 0 0 0 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2294311523438 2 522.227082 1042.43961 0.17261 9.0141E-05 2.0959 0.0010945 2.2685 0.0011847 522.2285248377162 58.28 0.2035 57.789 57.658 57.861 -0.49079 12 9 2 0 0 0 0.031062 1 31703 31703 54.774 10.367 1 1760000 5590 8470 3734 3822 6577 6577 -0.0799108475318917 DFGGIMPEGI 10 Unmodified _DFGGIMPEGI_ 0 0 0 REV__ENSG00000257594|ENST00000529983|GALNT4 REV__ENSG00000257594|ENST00000529983|GALNT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2706909179688 2 518.244418 1034.47428 NaN NaN NaN NaN NaN NaN NaN 74.472 1 73.997 73.497 74.497 -0.47588 0 0 0 0.97302 1 40760 40760 3.5965 1.019 1 + 5591 24565 3735 3823 6578 6578 -0.04157584936751846 DFGIEIYKGF 10 Unmodified _DFGIEIYKGF_ 0 0 0 REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8008422851562 2 594.800414 1187.58628 0.69787 0.00041509 -0.093141 -5.5401E-05 0.60473 0.00035969 594.8004780335384 72.489 0.27059 72.013 71.918 72.189 -0.47609 19 12 2 0 0 0 0.69064 1 39652 39652 3.9444 0.66309 1 1309500 + 5592 23935 3736 3824 6579 6579 -1.4075881153985392E-05 DFGRGYDFTI 10 Unmodified _DFGRGYDFTI_ 0 0 0 nc|ENSG00000164199|Q8WXG9-2|ADGRV1 nc|ENSG00000164199|Q8WXG9-2|ADGRV1 nc|ENSG00000164199|Q8WXG9-2|ADGRV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5215759277344 3 397.520739 1189.54039 0.34011 0.0001352 -0.037845 -1.5044E-05 0.30226 0.00012016 397.52089625147136 23.801 0.17451 20.973 20.898 21.073 -2.8273 15 10 2 0 0 0 0.65282 1 12902 12902 4.7159 0 1 2194100 5593 16335 3737 3825 6580 6580 -0.046800527703453554 DFGSCRSVYSK 11 Unmodified _DFGSCRSVYSK_ 0 0 0 nc|ENSG00000080823|Q9UQ07-5|MOK;nc|ENSG00000080823|Q9UQ07-6|MOK;ENSG00000080823|ENST00000361847|MOK;nc|ENSG00000080823|Q9UQ07-2|MOK;ENST00000518686.5_1_14:102700023-102771389:-|nuORF nc|ENSG00000080823|Q9UQ07-5|MOK nc|ENSG00000080823|Q9UQ07-5|MOK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.86083984375 3 416.860767 1247.56047 -0.6804 -0.00028363 0.69198 0.00028846 0.011585 4.8294E-06 416.8610497881388 15.138 0.37018 15.138 14.933 15.303 0 249 99 3 0 0 0 0.71618 1 7286 7286 1.1098 1.1098 1 2380100 5594 1307 3738 3826 6581 6581 -0.05340625102030572 DFHLRKLNR 9 Unmodified _DFHLRKLNR_ 0 0 0 REV__ENST00000547496.5_1_12:89853476-89885774:-|nuORF REV__ENST00000547496.5_1_12:89853476-89885774:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2326965332031 3 400.231634 1197.67307 NaN NaN NaN NaN NaN NaN NaN 76.229 1 76.229 75.729 76.729 0 0 0 0 0.85359 1 42389 42389 1.0715 0.10919 1 + 5595 20401 3739 3827 6582 6582 0.0821443647698743 DFHWCQHWFPF 11 Unmodified _DFHWCQHWFPF_ 0 0 0 ENST00000563039.2_1_16:29675279-29675321:+|nuORF ENST00000563039.2_1_16:29675279-29675321:+|nuORF ENST00000563039.2_1_16:29675279-29675321:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.88916015625 3 517.220518 1548.63972 -0.38445 -0.00019884 1.5428 0.00079798 1.1584 0.00059914 517.221589139987 56.121 0.21246 56.052 55.942 56.155 -0.068737 31 10 4 0 0 0 0.72981 1 30516 30516 1.4551 0.24029 1 11660000 5596 15351 3740 3828 6583 6583 -0.11264933357233531 DFIKPWIL 8 Unmodified _DFIKPWIL_ 0 0 0 ENST00000479000.1_1_9:6497201-6498088:+|nuORF ENST00000479000.1_1_9:6497201-6498088:+|nuORF ENST00000479000.1_1_9:6497201-6498088:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2687377929688 2 516.299853 1030.58515 0.65722 0.00033932 -2.2354 -0.0011541 -1.5782 -0.00081481 516.2997641656716 52.215 0.12199 52.156 52.067 52.189 -0.058914 10 5 2 0 0 0 8.7369 1 28299 28299 12.532 2.3482 1 987410 5597 14029 3741 3829 6584 6584 0.07108422833653094 DFINWGVQF 9 Unmodified _DFINWGVQF_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A;REV__ENSG00000136546|ENST00000643258|SCN7A REV__nc|ENSG00000169432|Q15858-4|SCN9A MSMS AL20221201_MKP_PDAC_01 4 375.8496704101562 3 375.850308 1124.5291 NaN NaN NaN NaN NaN NaN NaN 16.612 1 14.055 13.555 14.555 -2.557 0 0 0 0.7453 1 8618 8618 4.897 0 1 + 5598 22400;20169 3742 3830 6585 6585 -0.028188300738293037 DFIYRYFC 8 Unmodified _DFIYRYFC_ 0 0 0 REV__nc|ENSG00000101868|P09884|POLA1 REV__nc|ENSG00000101868|P09884|POLA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.5478820800781 3 376.172394 1125.49535 1.5965 0.00060057 2.7329 0.001028 4.3294 0.0016286 376.1741309415511 19.737 0.33713 17.08 16.938 17.275 -2.6564 27 21 2 0 0 0 8.7369 1 10586 10586 3.2813 1.1953 1 4107700 + 5599 18198 3743 3831 6586 6586 -0.062375748372005546 DFKKKDIPV 9 Unmodified _DFKKKDIPV_ 0 0 0 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42;ENST00000578593.1_1_17:61889231-61895755:+|nuORF ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7456665039062 2 545.318774 1088.623 0.28248 0.00015404 -1.5433 -0.00084157 -1.2608 -0.00068753 545.8190585100386 74.46 0.4071 74.506 74.344 74.751 0.045959 21 17 2 0 0 0 0.209 1 41004 41004 3.9444 2.6149 1 2264100 5600 10066 3744 3832 6587 6587 0.08222889028456848 DFKKLESF 8 Unmodified _DFKKLESF_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000511621.1_1_5:74011483-74012499:+|nuORF;ENST00000504459.5_1_5:74009375-74016573:+|nuORF ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7671813964844 2 507.26875 1012.52295 0.066923 3.3948E-05 -1.1618 -0.00058936 -1.0949 -0.00055542 507.2683550992815 93.051 0.44918 92.594 92.436 92.885 -0.4574 38 23 2 0 0 0 0.80676 1 51002 51002 2.5775 1.7838 1 2490900 5601 716 3745 3833 6588 6588 0.017186516946708252 DFKSQKNF 8 Unmodified _DFKSQKNF_ 0 0 0 ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3 ENST00000560910.5_1_15:102186874-102192564:-|nuORF ENST00000560910.5_1_15:102186874-102192564:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2556762695312 2 507.256174 1012.49779 NaN NaN NaN NaN NaN NaN NaN 91.262 1 91.262 90.762 91.762 0 0 0 0 0.97348 1 50473 50473 5.7604 0 1 5602 9239 3746 3834 6589 6589 -0.007954031079066226 DFKSQKNF 8 Unmodified _DFKSQKNF_ 0 0 0 ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3 ENST00000560910.5_1_15:102186874-102192564:-|nuORF ENST00000560910.5_1_15:102186874-102192564:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2554321289062 2 507.256174 1012.49779 NaN NaN NaN NaN NaN NaN NaN 91.953 1 91.472 90.972 91.972 -0.48092 0 0 0 0.97348 1 50264 50264 5.7604 0 1 5603 9239 3746 3834 6590 6590 -0.007954031079066226 DFLEDFLCF 9 Unmodified _DFLEDFLCF_ 0 0 0 ENSG00000237765|ENST00000422728|FAM200B ENSG00000237765|ENST00000422728|FAM200B ENSG00000237765|ENST00000422728|FAM200B MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8382263183594 3 383.503809 1147.4896 0.58812 0.00022554 -0.36342 -0.00013937 0.2247 8.6173E-05 383.50363124988854 12.273 0.4239 9.7914 9.6817 10.106 -2.482 303 160 3 0 0 0 0.58865 1 6156 6156 1.0715 0 1 9891300 5604 10656 3747 3835 6591 6591 -0.07824718139568176 DFLIVHVGN 9 Unmodified _DFLIVHVGN_ 0 0 0 REV__ENSG00000184860|ENST00000328945|SDR42E1 REV__ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7743530273438 2 507.274367 1012.53418 0.27874 0.0001414 -0.49411 -0.00025065 -0.21537 -0.00010925 507.274483962461 64.111 0.42868 63.626 63.458 63.887 -0.48512 60 20 5 0 0 0 0.30562 1 35048 35048 16.942 5.302 1 5335000 + 5605 23448 3748 3836 6592 6592 0.028414737888056152 DFLLHELCMS 10 Unmodified _DFLLHELCMS_ 0 0 0 REV__ENSG00000169247|ENST00000515425|SH3TC2 REV__ENSG00000169247|ENST00000515425|SH3TC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5214233398438 3 403.187715 1206.54132 0.37471 0.00015108 -0.72097 -0.00029068 -0.34625 -0.0001396 403.18769491602666 70.765 0.35196 70.287 70.131 70.483 -0.47735 34 17 3 0 0 0 0.67033 1 38685 38685 3.3196 0.58445 1 2870300 + 5606 22388 3749 3837 6593 6593 -0.05369297717288646 DFLLHELCMS 10 Unmodified _DFLLHELCMS_ 0 0 0 REV__ENSG00000169247|ENST00000515425|SH3TC2 REV__ENSG00000169247|ENST00000515425|SH3TC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.187715 1206.54132 0.28724 0.00011581 0.61908 0.00024961 0.90633 0.00036542 403.187992132462 70.143 0.20355 70.179 70.133 70.336 0.035515 -0.05429 0.00093912 NaN 3.3196 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1822500 + 5607 22388 3749 3837 -0.05369297717288646 DFLLLKFLL 9 Unmodified _DFLLLKFLL_ 0 0 0 REV__nc|ENSG00000171611|Q6ISU1-2|PTCRA REV__nc|ENSG00000171611|Q6ISU1-2|PTCRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.354736328125 2 561.352086 1120.68962 0.96807 0.00054343 3.1181 0.0017503 4.0862 0.0022938 561.3540009134937 100.77 0.082542 100.73 100.68 100.76 -0.04216 4 2 2 0 0 0 0.48152 1 55999 55999 8.5933 0 1 2179100 + 5608 22583 3750 3838 6594 6594 0.1341012459038211 DFLMSEKN 8 Unmodified _DFLMSEKN_ 0 0 0 nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B nc|ENSG00000147724|Q49AJ0-4|FAM135B nc|ENSG00000147724|Q49AJ0-4|FAM135B MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2297058105469 2 492.228768 982.442982 0.92896 0.00045726 0.27452 0.00013512 1.2035 0.00059238 492.2288562807341 101.35 0.10413 95.175 95.107 95.211 -6.1757 10 5 2 0 0 0 0.64853 1 67996 67996 21.747 5.8995 1 20042000 5609 5880 3751 3839 6595 6595 -0.048941579708412064 DFLQLFYF 8 Unmodified _DFLQLFYF_ 0 0 0 REV__ENST00000562299.1_1_16:55612978-55617007:+|nuORF REV__ENST00000562299.1_1_16:55612978-55617007:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.77392578125 2 546.773668 1091.53278 NaN NaN NaN NaN NaN NaN NaN 82.792 1 82.294 81.794 82.794 -0.49751 0 0 0 0.97348 1 45322 45322 5.7604 0 1 + 5610 28855 3752 3840 6596 6596 -0.009321602999762035 DFLQQYNKF 9 Unmodified _DFLQQYNKF_ 0 0 0 REV__ENSG00000112893|ENST00000261483|MAN2A1 REV__ENSG00000112893|ENST00000261483|MAN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.30224609375 2 601.795663 1201.57677 0.28247 0.00016999 0.6244 0.00037576 0.90687 0.00054575 601.7964428288739 66.838 0.60572 66.355 65.984 66.59 -0.48323 70 28 4 0 0 0 0.49272 1 36485 36485 7.9102 0.62092 1 8591800 + 5611 18842 3753 3841 6597 6597 -0.015951758736491684 DFLRAANP 8 Unmodified _DFLRAANP_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 ENSG00000108592|ENST00000427159|FTSJ3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2387390136719 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 52.89 1 52.827 52.327 53.327 -0.063423 0 0 0 0.97444 1 28665 28665 4.756 0 1 5612 2588 3754 3842 6598 6598 0.005883450661713141 DFLRGIRHYF 10 Unmodified _DFLRGIRHYF_ 0 0 0 REV__ENST00000577255.1_1_18:24039580-24056655:-|nuORF REV__ENST00000577255.1_1_18:24039580-24056655:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.9042053222656 3 441.903406 1322.68839 0.27218 0.00012028 0.10519 4.6485E-05 0.37738 0.00016676 441.90355595932846 55.455 0.25844 55.386 55.198 55.456 -0.068741 23 12 3 0 0 0 0.68371 1 30148 30148 4.7159 1.1232 1 1644600 + 5613 29030 3755 3843 6599 6599 0.03995303274155049 DFLRSLPIT 9 Unmodified _DFLRSLPIT_ 0 0 0 REV__nc|ENSG00000259384|P01241-4|GH1 REV__nc|ENSG00000259384|P01241-4|GH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.30322265625 2 531.303124 1060.5917 0.17 9.0322E-05 -0.68132 -0.00036198 -0.51131 -0.00027166 531.302517090716 66.691 0.77699 66.208 65.792 66.569 -0.48323 91 37 4 0 0 0 0.29507 1 36540 36540 24.021 4.7636 1 66128000 + 5614 20164 3756 3844 6600 6600 0.06382315994369492 DFLVEAYF 8 Unmodified _DFLVEAYF_ 0 0 0 REV__ENSG00000108797|ENST00000264638|CNTNAP1 REV__ENSG00000108797|ENST00000264638|CNTNAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2430114746094 2 502.242201 1002.46985 0.083883 4.213E-05 1.2821 0.00064393 1.366 0.00068606 502.24289770761675 52.709 0.29745 52.257 52.102 52.4 -0.45173 25 14 2 0 0 0 0.6895 1 28457 28457 18.135 4.6271 1 3720400 + 5615 18628 3757 3845 6601 6601 -0.03128726088004896 DFMCDEME 8 Unmodified _DFMCDEME_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.1620178222656 2 510.161379 1018.3082 -1.0375 -0.00052927 1.0012 0.00051078 -0.036258 -1.8498E-05 510.161901710691 32.442 0.3766 32.442 32.242 32.618 0 42 22 2 0 0 0 0.80975 1 16911 16911 0.79363 0.79363 1 13491000 5616 3515 3758 3846 6602 6602 -0.20021722499257066 DFMCDEME 8 Unmodified _DFMCDEME_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000546204.1_1_6:160200657-160201127:-|nuORF ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.161379 1018.3082 -1.0375 -0.00052927 1.0012 0.00051078 -0.036258 -1.8498E-05 510.161901710691 32.442 0.3766 32.442 32.242 32.618 0 0 0 NaN 0.79363 42 22 2 NaN NaN NaN NaN 0 NaN NaN 0 13491000 5617 3515 3758 3846 -0.20021722499257066 DFMDTIFYDIF 11 Unmodified _DFMDTIFYDIF_ 0 0 0 REV__nc|ENSG00000284762|O95263-6|PDE8B REV__nc|ENSG00000284762|O95263-6|PDE8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.076904296875 2 713.815404 1425.61626 -0.010117 -7.2218E-06 -0.06506 -4.6441E-05 -0.075177 -5.3663E-05 714.3170029700525 89.882 0.35876 89.882 89.69 90.048 0 56 25 3 0 0 0 0.71036 1 49642 49642 3.2813 1.6287 1 1363400 + 5618 30013 3759 3847 6603 6603 -0.07952836705067057 DFMLLLCASLQ 11 Unmodified _DFMLLLCASLQ_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8814697265625 3 418.547132 1252.61957 0.46307 0.00019382 -0.61352 -0.00025679 -0.15045 -6.297E-05 418.5466591424177 16.182 0.17143 13.625 13.53 13.701 -2.557 50 29 2 0 0 0 0.72981 1 8339 8339 1.4551 0.24029 1 2980100 5619 6354 3760 3848 6604 6604 0.003361348679391085 DFNLYDSAP 9 Unmodified _DFNLYDSAP_ 0 0 0 REV__ENSG00000122965|ENST00000261741|RBM19 REV__ENSG00000122965|ENST00000261741|RBM19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7569580078125 2 521.229822 1040.44509 0.65139 0.00033953 2.3195 0.001209 2.9709 0.0015485 521.2305679789741 57.732 0.188 57.732 57.657 57.845 0 13 8 2 0 0 0 0.19205 1 32154 32154 10.074 0 1 1203100 + 5620 19363 3761 3849 6605 6605 -0.07351405961389901 DFPAGGPP 8 Unmodified _DFPAGGPP_ 0 0 0 ENSG00000113196|ENST00000231121|HAND1 ENSG00000113196|ENST00000231121|HAND1 ENSG00000113196|ENST00000231121|HAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1793518066406 2 379.179404 756.344254 -0.28634 -0.00010857 -0.37647 -0.00014275 -0.66281 -0.00025133 379.1793030584376 35.475 0.21188 35.475 35.342 35.554 0 15 10 2 0 0 0 0.77907 1 18725 18725 10.183 7.2942 1 4276400 5621 2946 3762 3850 6606 6606 -0.04366393153577519 DFPGTILA 8 Unmodified _DFPGTILA_ 0 0 0 REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF REV__ENST00000513342.5_1_17:46990150-47004493:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2235717773438 2 417.223811 832.433069 NaN NaN NaN NaN NaN NaN NaN 19.39 1 19.413 18.913 19.913 0.023106 0 0 0 0.97444 1 9773 9773 0.69038 0 1 + 5622 21466 3763 3851 6607 6607 0.010150220860850823 DFPNIQHT 8 Unmodified _DFPNIQHT_ 0 0 0 ENSG00000261652|ENST00000569691|PIERCE2 ENSG00000261652|ENST00000569691|PIERCE2 ENSG00000261652|ENST00000569691|PIERCE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2311706542969 2 486.232699 970.450845 NaN NaN NaN NaN NaN NaN NaN 68.233 1 68.233 67.733 68.733 0 0 0 0 0.97444 1 38040 38040 2.0598 1.2661 1 5623 10842 3764 3852 6608 6608 -0.03556262659060394 DFPNSDGNAD 10 Unmodified _DFPNSDGNAD_ 0 0 0 REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2 REV__nc|ENSG00000100266|Q9UNF0-2|PACSIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2025756835938 2 526.201793 1050.38903 0.61506 0.00032365 0.44794 0.00023571 1.063 0.00055935 526.2022703472967 59.449 0.35952 59.449 59.217 59.577 0 82 15 7 0 0 0 0.62068 1 33040 33040 10.074 4.3135 1 36246000 + 5624 18036 3765 3853 6609 6609 -0.13414658868850893 DFQCERPRCA 10 Unmodified _DFQCERPRCA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7664794921875 2 612.766057 1223.51756 0.83553 0.00051199 -1.1495 -0.0007044 -0.31401 -0.00019242 612.7654112108557 54.143 0.74697 54.143 53.968 54.715 0 83 33 4 0 0 0 0.52888 1 30007 30007 14.838 3.3436 1 20312000 + 5625 18837 3766 3854 6610 6610 -0.08525718431087626 DFQCERPRCA 10 Unmodified _DFQCERPRCA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7659912109375 2 612.766057 1223.51756 0.1745 0.00010693 -1.4842 -0.00090948 -1.3097 -0.00080255 612.7653075661345 54.737 0.47425 54.271 54.104 54.579 -0.46664 61 23 4 0 0 0 0.52888 1 29624 29624 14.838 14.838 1 21682000 + 5626 18837 3766 3854 6611 6611 -0.08525718431087626 DFQWPHPEE 9 Unmodified _DFQWPHPEE_ 0 0 0 REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.794189453125 2 592.753995 1183.49344 0.80359 0.00047633 -1.3471 -0.00079852 -0.54354 -0.00032219 592.7530176542056 99.358 0.17944 93.182 93.097 93.276 -6.1757 19 11 2 0 0 0 0.1474 1 66145 66145 28.487 11.545 1 74591000 + 5627 18719 3767 3855 6612 6612 -0.0909691232145633 DFRAAAEPET 10 Unmodified _DFRAAAEPET_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MSMS AL20221201_MKP_PDAC_01 4 553.7568969726562 2 553.759278 1105.504 NaN NaN NaN NaN NaN NaN NaN 33.157 1 29.3 28.8 29.8 -3.8562 0 0 0 0.92825 1 18992 18992 6.7232 0.51738 1 + 5628 19788 3768 3856 6613 6613 -0.04452929667058925 DFREWFEFSPY 11 Unmodified _DFREWFEFSPY_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MSMS AL20221201_MKP_PDAC_01 4 762.3350219726562 2 761.835517 1521.65648 0.64808 0.00049373 -0.26342 -0.00020069 0.38466 0.00029304 761.8354378983797 53.247 0.41193 47.443 47.216 47.628 -5.8042 63 25 3 0 0 0 0.59689 1 33548 33548 11.495 2.7493 1 50065000 5629 9627 3769 3857 6614 6614 -0.08348153990277751 DFRFSYKF 8 Unmodified _DFRFSYKF_ 0 0 0 ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1;ENST00000566601.1_1_16:74503836-74506291:-|nuORF;ENST00000562090.5_1_16:74487067-74506519:-|nuORF ENSG00000090863|ENST00000422840|GLG1 ENSG00000090863|ENST00000422840|GLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2758178710938 2 555.274367 1108.53418 0.68054 0.00037789 0.85078 0.00047241 1.5313 0.0008503 555.2748265769912 56.757 0.35535 56.688 56.559 56.915 -0.068737 41 17 3 0 0 0 0.44629 2 30855 30855;30952 39.957 5.7506 1 12120000 5630 1570 3770 3858 6615;6616 6615 -0.015745262111977354 DFRIWQGYN 9 Unmodified _DFRIWQGYN_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.R1802Gfs*50|1|0.1|ENSG00000163625|chr4:84756946-84756946|G/-|frameshift_variant;ENST00000426414.6_1_4:85730999-85781744:-|nuORF nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7836303710938 2 599.78563 1197.55671 -0.38568 -0.00023133 -1.9763 -0.0011854 -2.362 -0.0014167 599.7845879997025 31.748 0.13759 31.748 31.661 31.799 0 11 6 2 0 0 0 0.4887 1 16539 16539 8.1555 0 1 1179800 5631 7032 3771 3859 6617 6617 -0.03416926813565624 DFRVLYVFV 9 Unmodified _DFRVLYVFV_ 0 0 0 nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000572819.6_1_17:1939773-1940251:+|nuORF;ENST00000576129.5_1_17:1936818-1940251:+|nuORF nc|ENSG00000108963|Q9BZG8-2|DPH1 nc|ENSG00000108963|Q9BZG8-2|DPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5501403808594 3 386.54997 1156.62808 -0.15391 -5.9493E-05 0.78928 0.0003051 0.63537 0.0002456 386.55031821472676 35.636 0.25072 35.661 35.494 35.744 0.024971 25 11 3 0 0 0 0.12424 1 18829 18829 22.658 0 1 5124100 5632 2623 3772 3860 6618 6618 0.056031928910670104 DFSEVDAQEQ 10 Unmodified _DFSEVDAQEQ_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123;ENST00000497963.1_1_10:12288111-12291735:+|nuORF;ENST00000498747.1_1_10:12279256-12292333:+|nuORF ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2448120117188 2 584.243657 1166.47276 0.25772 0.00015057 -0.93534 -0.00054646 -0.67761 -0.00039589 584.2434149832474 52.826 0.73092 52.826 52.596 53.327 0 133 33 7 0 0 0 0.60623 3 29151 29151;29251;29361 10.824 2.2306 1 465390000 5633 6115 3773 3861 6619;6620;6621 6619 -0.10381547491806487 DFSLKRDKL 9 Unmodified _DFSLKRDKL_ 0 0 0 REV__ENST00000519259.5_1_5:65465827-65465875:+|nuORF REV__ENST00000519259.5_1_5:65465827-65465875:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.354736328125 2 561.319306 1120.62406 0.87186 0.00048939 0.21975 0.00012335 1.0916 0.00061275 561.8204266855199 100.81 0.15625 100.77 100.71 100.87 -0.04216 6 5 2 0 0 0 0.20528 1 55999 55999 8.5933 0 1 1118400 + 5634 28259 3774 3862 6622 6622 0.06857103397373976 DFSVHGNII 9 Unmodified _DFSVHGNII_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2544860839844 2 501.256174 1000.49779 0.85455 0.00042835 1.6611 0.00083262 2.5156 0.001261 501.2538458242337 51.401 0.39225 51.401 51.229 51.622 0 47 17 4 0 0 0 0.49272 1 28444 28444 7.9102 0 1 3339400 5635 1501 3775 3863 6623 6623 -0.0024340310790194053 DFTCLPLFL 9 Unmodified _DFTCLPLFL_ 0 0 0 ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL ENSG00000120334|ENST00000682279|CENPL ENSG00000120334|ENST00000682279|CENPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7766723632812 2 534.775354 1067.53615 -0.57196 -0.00030587 2.5717 0.0013753 1.9997 0.0010694 534.7767011178687 56.611 0.17583 56.125 56.05 56.226 -0.48554 19 11 2 0 0 0 0.14602 1 30725 30725 28.487 3.0875 1 9481000 5636 3512 3776 3864 6624 6624 0.005087664823804516 DFTDLGEEDDI 11 Unmodified _DFTDLGEEDDI_ 0 0 0 ENSG00000134775|ENST00000590592|FHOD3;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.7596435546875 2 634.76188 1267.50921 -0.92423 -0.00058667 -1.9079 -0.001211 -2.8321 -0.0017977 634.7608772680535 56.543 0.11784 56.057 56.018 56.136 -0.48554 11 8 2 0 0 0 0.48615 1 30716 30716 17.113 3.2068 1 6833200 5637 4638 3777 3865 6625 6625 -0.11384715385747768 DFTELEWH 8 Unmodified _DFTELEWH_ 0 0 0 ENSG00000179292|ENST00000327259|TMEM151A ENSG00000179292|ENST00000327259|TMEM151A ENSG00000179292|ENST00000327259|TMEM151A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7377319335938 2 538.737814 1075.46108 0.20413 0.00010997 -0.48109 -0.00025918 -0.27696 -0.00014921 538.7372078681426 52.545 0.30013 52.545 52.402 52.702 0 32 13 3 0 0 0 0.74163 1 29086 29086 13.508 0.97634 1 10931000 5638 8824 3778 3866 6626 6626 -0.0736369972448756 DFTSRDYYIN 10 Unmodified _DFTSRDYYIN_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000508032.5_1_4:24529549-24538851:-|nuORF;ENST00000510645.5_1_4:24519211-24534570:-|nuORF;ENST00000512903.1_1_4:24529549-24534804:-|nuORF;ENST00000508368.1_1_4:24529637-24534570:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20221201_MKP_PDAC_01 4 647.2881469726562 2 647.290942 1292.56733 NaN NaN NaN NaN NaN NaN NaN 14.829 1 12.302 11.802 12.802 -2.5273 0 0 0 0.99388 1 7559 7559 1.3295 0.25807 1 5639 2658 3779 3867 6627 6627 -0.06724988949804356 DFTVESHAET 10 Unmodified _DFTVESHAET_ 0 0 0 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7281494140625 2 568.248743 1134.48293 0.32785 0.0001863 -4.0316 -0.0022909 -3.7037 -0.0021046 568.748316280702 80.096 0.16671 80.096 80.013 80.18 0 23 9 3 0 0 0 0.23325 1 44509 44509 10.074 0.6908 1 1040000 + 5640 20938 3780 3868 6628 6628 -0.07892939766566087 DFVFEDSLGPY 11 Unmodified _DFVFEDSLGPY_ 0 0 0 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.7909545898438 2 644.790244 1287.56593 0.17741 0.00011439 0.26604 0.00017154 0.44345 0.00028593 644.7904896651205 66.742 0.34856 66.742 66.512 66.86 0 36 15 3 0 0 0 0.30496 1 37288 37288 2.9952 1.151 1 3451500 5641 7751 3781 3869 6629 6629 -0.06634623038576137 DFWGKESLWG 10 Unmodified _DFWGKESLWG_ 0 0 0 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant;ENSG00000249715|ENST00000624922|FER1L5 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8616333007812 3 408.860984 1223.56112 0.58287 0.00023831 2.6166 0.0010698 3.1995 0.0013081 408.8619654837112 28.356 0.16933 28.294 28.199 28.368 -0.062159 14 6 3 0 0 0 0.64628 1 14626 14626 11.518 4.8875 1 5225700 5642 10748 3782 3870 6630 6630 -0.041714623906727866 DFWGKESLWG 10 Unmodified _DFWGKESLWG_ 0 0 0 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant;ENSG00000249715|ENST00000624922|FER1L5 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 408.860984 1223.56112 -0.061197 -2.5021E-05 3.8927 0.0015916 3.8315 0.0015666 408.8626359650209 28.267 0.19118 28.296 28.163 28.354 0.029564 0.0013803 0.00065967 NaN 11.518 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3155200 5643 10748 3782 3870 -0.041714623906727866 DFWPLLFFF 9 Unmodified _DFWPLLFFF_ 0 0 0 ENST00000489888.1_1_6:131948430-131949201:-|nuORF ENST00000489888.1_1_6:131948430-131949201:-|nuORF ENST00000489888.1_1_6:131948430-131949201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.313232421875 2 616.312961 1230.61137 NaN NaN NaN NaN NaN NaN NaN 74.949 1 74.949 74.449 75.449 0 0 0 0 0.82396 1 41698 41698 4.756 0.42677 1 5644 14249 3783 3871 6631 6631 0.005286920051275956 DFWSIDHY 8 Unmodified _DFWSIDHY_ 0 0 0 REV__ENST00000204726.7_3_12:133398839-133405145:-|nuORF REV__ENST00000204726.7_3_12:133398839-133405145:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7979736328125 2 541.732532 1081.45051 0.16924 9.1683E-05 -0.13096 -7.0946E-05 0.038279 2.0737E-05 541.7324486980216 62.459 0.38131 62.459 62.274 62.655 0 44 24 2 0 0 0 8.7369 1 34933 34933 5.7604 0.52976 1 22773000 + 5645 24724 3784 3872 6632 6632 -0.08695682378902347 DFWYCKRCK 9 Unmodified _DFWYCKRCK_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;ENST00000483350.1_1_3:50036895-50096022:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.5275573730469 3 416.859933 1247.55797 -0.68003 -0.00028348 2.3282 0.00097054 1.6482 0.00068706 416.8608382861173 16.079 0.11036 16.079 16.057 16.167 0 33 19 2 0 0 0 0.61381 1 7852 7852 0.23584 0.076522 1 756040 5646 277 3785 3873 6633 6633 -0.0559075204068904 DFYFDENPY 9 Unmodified _DFYFDENPY_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2409057617188 2 605.240386 1208.46622 -0.06282 -3.8021E-05 -0.11558 -6.9955E-05 -0.1784 -0.00010798 605.2403206539293 69.301 0.2671 69.301 69.177 69.444 0 18 11 2 0 0 0 0.39863 1 38615 38615 12.532 7.7755 1 833200 5647 3426 3786 3874 6634 6634 -0.12967440652505502 DFYHVFKKM 9 Unmodified _DFYHVFKKM_ 0 0 0 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5403747558594 3 405.539077 1213.5954 NaN NaN NaN NaN NaN NaN NaN 17.512 1 17.526 17.026 18.026 0.013865 0 0 0 0.85798 1 8714 8714 0.23584 0.076522 1 5648 7741 3787 3875 6635 6635 -0.002853375034419514 DFYPLTFF 8 Unmodified _DFYPLTFF_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7510375976562 2 525.252569 1048.49058 -0.30452 -0.00015995 -3.2184 -0.0016905 -3.5229 -0.0018504 525.2530538121405 61.384 0.18678 60.895 60.756 60.943 -0.48932 10 8 2 0 0 0 8.7369 1 33440 33440 20.871 10.047 1 891860 5649 10070 3788 3876 6636 6636 -0.03172135708359747 DFYSEYLCI 9 Unmodified _DFYSEYLCI_ 0 0 0 REV__ENSG00000174123|ENST00000308973|TLR10 REV__ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.75 2 576.749533 1151.48451 1.0853 0.00062592 -0.58086 -0.00033501 0.50439 0.00029091 576.7492164249059 100.63 0.11938 100.59 100.51 100.63 -0.04216 12 4 4 0 0 0 0.10247 1 55907 55907 36.044 3.7387 1 12088000 + 5650 22768 3789 3877 6637 6637 -0.08517022002160957 DFYSEYLCI 9 Unmodified _DFYSEYLCI_ 0 0 0 REV__ENSG00000174123|ENST00000308973|TLR10 REV__ENSG00000174123|ENST00000308973|TLR10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 576.749533 1151.48451 0.34351 0.00019812 0.21489 0.00012394 0.5584 0.00032206 576.7489278077659 100.62 0.082947 100.62 100.56 100.64 0 0.033726 0.00050643 NaN 36.044 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 673330 + 5651 22768 3789 3877 -0.08517022002160957 DGAPHYVAF 9 Unmodified _DGAPHYVAF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7298889160156 2 488.729792 975.445031 -0.085432 -4.1753E-05 0.52921 0.00025864 0.44378 0.00021689 488.7299997364599 48.899 0.52825 48.899 48.6 49.128 0 62 25 3 0 0 0 0.010877 2 26845 26845;26969 77.984 28.315 1 121160000 5652 4239 3790 3878 6638;6639 6638 -0.04367361170716322 DGAPHYVAF 9 Unmodified _DGAPHYVAF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7307434082031 2 488.729792 975.445031 0.71937 0.00035158 0.25984 0.00012699 0.97921 0.00047857 488.7300641201995 49.284 0.24395 48.913 48.799 49.043 -0.37172 20 11 2 0 0 0 0.016184 1 26502 26502 67.344 17.675 1 7391700 5653 4239 3790 3878 6640 6640 -0.04367361170716322 DGAPHYVAF 9 Unmodified _DGAPHYVAF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7299499511719 2 488.729792 975.445031 1.1058 0.00054042 -0.46332 -0.00022644 0.64246 0.00031399 488.72947930763405 55.118 0.53384 49.197 48.94 49.474 -5.9211 88 33 4 0 0 0 0.010877 3 35056 34911;35056;35203 77.984 28.315 1 188120000 5654 4239 3790 3878 6641;6642;6643 6642 -0.04367361170716322 DGATMGYWEQF 11 Unmodified _DGATMGYWEQF_ 0 0 0 REV__ENSG00000163293|ENST00000295461|NIPAL1 REV__ENSG00000163293|ENST00000295461|NIPAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.7655639648438 2 652.766245 1303.51794 -0.23359 -0.00015248 0.98579 0.00064349 0.7522 0.00049101 653.2686905666419 35.659 0.30017 35.659 35.515 35.816 0 36 14 3 0 0 0 0.65108 1 18838 18838 8.7454 1.1365 1 5702000 + 5655 21744 3791 3879 6644 6644 -0.12168020230274124 DGCRKNRQKW 10 Unmodified _DGCRKNRQKW_ 0 0 0 ENSG00000138735|ENST00000354960|PDE5A;nc|ENSG00000138735|O76074-2|PDE5A ENSG00000138735|ENST00000354960|PDE5A ENSG00000138735|ENST00000354960|PDE5A MSMS AL20221201_MKP_PDAC_01 4 430.8893737792969 3 430.88765 1289.64112 NaN NaN NaN NaN NaN NaN NaN 106.2 1 100.03 99.527 100.53 -6.1757 0 0 0 1.0024 1 71101 71101 0.13989 0 1 5656 5093 3792 3880 6645 6645 0.007887007315275696 DGCSCCCFPC 10 Unmodified _DGCSCCCFPC_ 0 0 0 REV__ENSG00000176723|ENST00000315678|ZNF843 REV__ENSG00000176723|ENST00000315678|ZNF843 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.1369018554688 2 519.136326 1036.2581 NaN NaN NaN NaN NaN NaN NaN 105.22 1 105.13 104.63 105.63 -0.091774 0 0 0 1.0061 1 57250 57250 0 0 1 + 5657 22941 3793 3881 6646 6646 -0.258578717004184 DGCSCCCFPC 10 Unmodified _DGCSCCCFPC_ 0 0 0 REV__ENSG00000176723|ENST00000315678|ZNF843 REV__ENSG00000176723|ENST00000315678|ZNF843 MSMS AL20221201_MKP_PDAC_01 4 519.2623291015625 2 519.136326 1036.2581 NaN NaN NaN NaN NaN NaN NaN 42.716 1 38.032 37.532 38.532 -4.6846 0 0 0 1.0061 1 25838 25838 0 0 1 + 5658 22941 3793 3881 6647 6647 -0.258578717004184 DGDRTEGPGF 10 Unmodified _DGDRTEGPGF_ 0 0 0 ENST00000299871.9_2_19:58144611-58146010:+|nuORF;ENST00000542008.1_1_19:58144599-58145500:+|nuORF ENST00000299871.9_2_19:58144611-58146010:+|nuORF ENST00000299871.9_2_19:58144611-58146010:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7261352539062 2 525.727978 1049.4414 0.42576 0.00022384 -2.1102 -0.0011094 -1.6844 -0.00088554 525.7265919738096 83.203 0.28085 82.705 82.583 82.864 -0.49751 15 10 2 0 0 0 0.69377 1 45568 45568 3.5965 0.70727 1 640170 5659 11546 3794 3882 6648 6648 -0.081340757352109 DGDTTENQMF 10 Unmodified _DGDTTENQMF_ 0 0 0 ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P ENSG00000237988|ENST00000641137|OR2I1P ENSG00000237988|ENST00000641137|OR2I1P MSMS AL20221201_MKP_PDAC_01 4 386.4858703613281 3 386.485366 1156.43427 NaN NaN NaN NaN NaN NaN NaN 47.995 1 42.761 42.261 43.261 -5.2339 0 0 0 0.97592 1 29852 29852 1.5923 0 1 5660 10657 3795 3883 6649 6649 -0.1376917639797739 DGDTYTLVEHS 11 Unmodified _DGDTYTLVEHS_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1;nc|ENSG00000106683|P53667-3|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8513488769531 3 412.850814 1235.53061 0.24846 0.00010258 0.32984 0.00013618 0.5783 0.00023875 412.8511410430955 45.843 0.30915 45.843 45.685 45.994 0 36 15 3 0 0 0 0.58219 1 24996 24996 6.6235 1.9075 1 9267800 5661 2452 3796 3884 6650 6650 -0.07773285566372579 DGDTYTLVEHS 11 Unmodified _DGDTYTLVEHS_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1;nc|ENSG00000106683|P53667-3|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8514709472656 3 412.850814 1235.53061 0.32676 0.0001349 0.46014 0.00018997 0.7869 0.00032487 412.8512706355522 46.105 0.32957 45.768 45.628 45.957 -0.33664 35 16 3 0 0 0 0.56638 1 24639 24639 7.0371 0.40671 1 14286000 5662 2452 3796 3884 6651 6651 -0.07773285566372579 DGDVWSDQDRY 11 Unmodified _DGDVWSDQDRY_ 0 0 0 REV__ENSG00000165973|ENST00000357134|NELL1 REV__ENSG00000165973|ENST00000357134|NELL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.521484375 3 452.521467 1354.54257 -0.045725 -2.0692E-05 -0.10237 -4.6326E-05 -0.1481 -6.7018E-05 452.5214686756221 29.107 0.2392 29.107 29.022 29.262 0 25 11 3 0 0 0 0.73451 1 15076 15076 1.0136 0.50762 1 1771900 + 5663 22071 3797 3885 6652 6652 -0.12051668823187356 DGEDYCTGGNN 11 Unmodified _DGEDYCTGGNN_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.6961059570312 2 572.696017 1143.37748 NaN NaN NaN NaN NaN NaN NaN 3.2985 1 3.2985 2.7985 3.7985 0 0 0 0 0.9435 1 1602 1602 0 0 1 + 5664 18166 3798 3886 6653 6653 -0.1884722395445806 DGEMEDDDHF 10 Unmodified _DGEMEDDDHF_ 0 0 0 REV__ENSG00000149474|ENST00000688188|KAT14 REV__ENSG00000149474|ENST00000688188|KAT14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.8045043945312 3 403.804876 1208.3928 NaN NaN NaN NaN NaN NaN NaN 44.541 1 44.541 44.041 45.041 0 0 0 0 0.9731 1 24237 24237 3.5871 0.5148 1 + 5665 20997 3799 3887 6654 6654 -0.20306357157323873 DGEVAFWKYQR 11 Unmodified _DGEVAFWKYQR_ 0 0 0 ENSG00000144021|ENST00000488633|CIAO1 ENSG00000144021|ENST00000488633|CIAO1 ENSG00000144021|ENST00000488633|CIAO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.8407592773438 2 699.843676 1397.6728 NaN NaN NaN NaN NaN NaN NaN 54.291 1 54.224 53.724 54.724 -0.066936 0 0 0 0.79635 1 29478 29478 12.241 5.1389 1 5666 5574 3800 3888 6655 6655 -0.01013028033548835 DGFDELQGAF 10 Unmodified _DGFDELQGAF_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7387084960938 2 549.740554 1097.46655 0.2794 0.0001536 -0.67803 -0.00037274 -0.39863 -0.00021914 549.7401672721965 64.842 0.4214 64.842 64.65 65.072 0 30 19 2 0 0 0 0.52888 1 36148 36148 14.838 0.93222 1 2737900 5667 6898 3801 3889 6656 6656 -0.0782802093265218 DGFKEQGVTF 10 Unmodified _DGFKEQGVTF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2719116210938 2 564.272021 1126.52949 0.39433 0.00022251 -0.19282 -0.0001088 0.20151 0.00011371 564.2719608084075 48.055 0.41579 48.055 47.897 48.313 0 59 20 4 0 0 0 0.0036758 2 26408 26291;26408 117.76 73.902 1 76569000 5668 7904 3802 3890 6657;6658 6658 -0.02871455144600077 DGFKEQGVTF 10 Unmodified _DGFKEQGVTF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2736206054688 2 564.272021 1126.52949 0.60167 0.00033951 1.9698 0.0011115 2.5715 0.001451 564.2724612083401 48.378 0.19695 48.007 47.905 48.102 -0.37172 16 9 2 0 0 0 0.48629 1 25995 25995 24.991 9.1438 1 1990300 5669 7904 3802 3890 6659 6659 -0.02871455144600077 DGFRQIEH 8 Unmodified _DGFRQIEH_ 0 0 0 REV__ENSG00000255974|ENST00000301141|CYP2A6 REV__ENSG00000255974|ENST00000301141|CYP2A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1001.236694335938 1 1001.47992 1000.47264 0.29381 0.00029425 0.66107 0.00066205 0.95488 0.00095629 1001.4812096554805 73.578 0.48262 73.578 73.44 73.922 0 34 21 2 0 0 0 8.7369 1 41125 41125 2.5775 0 1 959660 + 5670 24547 3803 3891 6660 6660 -0.027574579104680197 DGFSQFLE 8 Unmodified _DGFSQFLE_ 0 0 0 REV__ENSG00000220948|ENST00000534741|TRIM51G REV__ENSG00000220948|ENST00000534741|TRIM51G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.4205932617188 1 942.420339 941.413062 -0.065933 -6.2137E-05 1.6495 0.0015545 1.5836 0.0014924 942.4213369441296 69.439 0.23043 69.439 69.326 69.557 0 17 9 2 0 0 0 0.71527 1 38674 38674 15.847 1.0089 1 779130 + 5671 24357 3804 3892 6661 6661 -0.05998773644500943 DGFWDIQTF 9 Unmodified _DGFWDIQTF_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7539672851562 2 564.753464 1127.49238 0.54395 0.0003072 -0.19184 -0.00010834 0.35211 0.00019886 564.7531624533628 96.206 0.18948 95.902 95.803 95.993 -0.30472 16 10 2 0 0 0 0.55144 1 52554 52554 4.3292 2.2695 1 389880 5672 755 3805 3893 6662 6662 -0.06627126690409568 DGGQDLPAETA 11 Unmodified _DGGQDLPAETA_ 0 0 0 ENST00000247295.4_1_9:134133967-134134456:-|nuORF ENST00000247295.4_1_9:134133967-134134456:-|nuORF ENST00000247295.4_1_9:134133967-134134456:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7770385742188 2 537.240918 1072.46728 0.1049 5.6359E-05 -0.88538 -0.00047566 -0.78047 -0.0004193 537.2403113285764 78.858 0.4073 78.372 78.189 78.596 -0.48596 59 16 5 0 0 0 0.29031 1 43288 43288 13.615 5.7047 1 3064200 5673 11126 3806 3894 6663 6663 -0.06605226283613774 DGGSPHFQES 10 Unmodified _DGGSPHFQES_ 0 0 0 ENST00000547791.2_2_12:56415181-56418838:+|nuORF ENST00000547791.2_2_12:56415181-56418838:+|nuORF ENST00000547791.2_2_12:56415181-56418838:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.718994140625 2 530.720153 1059.42575 0.096875 5.1413E-05 -1.2653 -0.0006715 -1.1684 -0.00062009 530.7193449004523 66.421 0.3931 65.937 65.757 66.15 -0.48323 67 19 4 0 0 0 0.6785 1 36212 36212 5.2969 0.066215 1 27286000 5674 15128 3807 3895 6664 6664 -0.10158362252286679 DGHLFQVEY 9 Unmodified _DGHLFQVEY_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2587280273438 2 554.258914 1106.50327 0.83503 0.00046282 0.70555 0.00039106 1.5406 0.00085388 554.259237372108 57.357 0.35447 57.357 57.177 57.532 0 57 15 5 0 0 0 0.094149 2 31870 31870;31973 34.402 19.563 1 35532000 5675 1924;6336 3808 3896 6665;6666 6665 -0.04571724316087966 DGHLFQVEY 9 Unmodified _DGHLFQVEY_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2590942382812 2 554.258914 1106.50327 0.5398 0.00029919 0.9316 0.00051635 1.4714 0.00081553 554.2591155384808 57.983 0.32935 57.493 57.31 57.639 -0.48974 42 15 4 0 0 0 0.06294 1 31503 31503 41.84 25.992 1 9993100 5676 1924;6336 3808 3896 6667 6667 -0.04571724316087966 DGHLFQVEY 9 Unmodified _DGHLFQVEY_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2593994140625 2 554.258914 1106.50327 1.1581 0.00064188 0.7917 0.00043881 1.9498 0.0010807 554.2592713576516 64.714 0.66935 58.538 58.298 58.968 -6.1757 67 37 2 0 0 0 0.039985 2 41870 41870;41999 49.933 28.186 1 89743000 5677 1924;6336 3808 3896 6668;6669 6668 -0.04571724316087966 DGHPCGYG 8 Unmodified _DGHPCGYG_ 0 0 0 REV__ENST00000559713.1_1_15:78506166-78526843:-|nuORF REV__ENST00000559713.1_1_15:78506166-78526843:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.1510925292969 2 403.15032 804.286088 0.80544 0.00032471 1.0229 0.00041237 1.8283 0.00073708 403.15058989457657 43.418 0.39755 38.653 38.477 38.874 -4.7648 52 26 3 0 0 0 0.80975 1 26336 26336 0.79363 0 1 34075000 + 5678 18323 3809 3897 6670 6670 -0.12388398070493167 DGHSLACTDSL 11 Unmodified _DGHSLACTDSL_ 0 0 0 REV__ENSG00000173124|ENST00000394005|ACSM6 REV__ENSG00000173124|ENST00000394005|ACSM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7451171875 2 559.74277 1117.47099 NaN NaN NaN NaN NaN NaN NaN 18.945 1 18.968 18.468 19.468 0.023106 0 0 0 0.94165 1 9531 9531 1.3295 0.63916 1 + 5679 22704 3810 3898 6671 6671 -0.08304879781394447 DGIVSLPFS 9 Unmodified _DGIVSLPFS_ 0 0 0 REV__ENST00000498731.5_1_3:181459494-181459650:+|nuORF REV__ENST00000498731.5_1_3:181459494-181459650:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.487548828125 1 934.488024 933.480748 0.38542 0.00036017 0.27348 0.00025556 0.65889 0.00061573 934.4879425363199 70.962 0.17815 70.484 70.411 70.589 -0.47736 9 7 2 0 0 0 0.070838 1 38851 38851 39.957 0 1 769830 + 5680 27998 3811 3899 6672 6672 0.011346762862899595 DGKFFRQYQT 10 Unmodified _DGKFFRQYQT_ 0 0 0 REV__ENSG00000177932|ENST00000315475|ZNF354C REV__ENSG00000177932|ENST00000315475|ZNF354C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.715087890625 3 430.547288 1288.62004 0.16198 6.9741E-05 -0.22171 -9.5457E-05 -0.059729 -2.5716E-05 430.54595288177046 16.921 0.19608 16.926 16.805 17.001 0.0050564 60 21 4 0 0 0 0.23973 1 8545 8545 1.4551 0 1 9018100 + 5681 23009 3812 3900 6673 6673 -0.012729860963190731 DGKISFDEFV 10 Unmodified _DGKISFDEFV_ 0 0 0 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3 nc|ENSG00000102024|P13797-2|PLS3 nc|ENSG00000102024|P13797-2|PLS3 MSMS AL20221201_MKP_PDAC_01 4 578.7798461914062 2 578.779679 1155.5448 NaN NaN NaN NaN NaN NaN NaN 25.038 1 22.155 21.655 22.655 -2.8831 0 0 0 0.78298 1 13673 13673 13.042 0 1 5682 2010 3813 3901 6674 6674 -0.026745883474404764 DGKSLKLHSF 10 Unmodified _DGKSLKLHSF_ 0 0 0 nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8770446777344 3 377.876746 1130.60841 NaN NaN NaN NaN NaN NaN NaN 61.149 1 60.659 60.159 61.159 -0.48932 0 0 0 0.94014 1 33304 33304 3.3196 1.5774 1 5683 9085 3814 3902 6675 6675 0.04832816880320934 DGKSLKLHSF 10 Unmodified _DGKSLKLHSF_ 0 0 0 nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7728271484375 2 566.31148 1130.60841 1.8838 0.0010668 2.1439 0.0012141 4.0277 0.0022809 566.3126874971961 82.077 0.31623 82.139 81.954 82.27 0.061996 23 12 2 0 0 0 0.20255 1 45423 45423 24.991 4.5373 1 5596100 5684 9085 3814 3902 6676 6676 0.04832816880320934 DGNERLMF 8 Unmodified _DGNERLMF_ 0 0 0 REV__ENST00000398632.3_1_21:42775383-42780157:+|nuORF REV__ENST00000398632.3_1_21:42775383-42780157:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2262878417969 2 491.226559 980.438566 -0.26849 -0.00013189 0.036195 1.778E-05 -0.23229 -0.00011411 491.22670356176855 21.703 0.2551 21.703 21.551 21.806 0 51 39 2 0 0 0 0.75262 1 10955 10955 12.532 0.29089 1 1624200 + 5685 23351 3815 3903 6677 6677 -0.05243622393743408 DGNSLIVGY 9 Unmodified _DGNSLIVGY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.4637451171875 1 937.462538 936.455261 0.51317 0.00048108 -2.9509 -0.0027664 -2.4378 -0.0022853 937.4594592340351 57.268 0.37558 57.268 57.135 57.51 0 44 16 3 0 0 0 0.05447 2 31826 31826;31933 43.858 15.371 1 4856800 5686 1437 3816 3904 6678;6679 6678 -0.015507982361327777 DGNSLIVGY 9 Unmodified _DGNSLIVGY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2359924316406 2 469.234907 936.455261 0.79549 0.00037327 0.16642 7.809E-05 0.96191 0.00045136 469.2348842927277 57.298 0.33461 57.298 57.156 57.49 0 24 14 2 0 0 0 0.024882 1 31860 31860 58.679 3.9053 1 2669300 5687 1437 3816 3904 6680 6680 -0.015507982361327777 DGRIDYDEF 9 Unmodified _DGRIDYDEF_ 0 0 0 ENSG00000114854|ENST00000232975|TNNC1 ENSG00000114854|ENST00000232975|TNNC1 ENSG00000114854|ENST00000232975|TNNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.24169921875 2 565.24346 1128.47237 0.83037 0.00046936 -3.1696 -0.0017916 -2.3392 -0.0013222 565.240853970376 46.401 0.41323 46.401 46.131 46.544 0 41 19 3 0 0 0 0.27545 1 25395 25395 18.373 3.5348 1 4229300 5688 3068 3817 3905 6681 6681 -0.08672922420987561 DGRLDIVKY 9 Unmodified _DGRLDIVKY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2005004882812 3 360.201229 1077.58186 -0.36962 -0.00013314 0.52388 0.0001887 0.15426 5.5563E-05 360.2013310843674 41.679 0.28721 41.679 41.538 41.825 0 35 14 3 0 0 0 0.024507 1 22460 22460 59.052 30.558 1 19666000 5689 7825 3818 3906 6682 6682 0.0461712798901317 DGRLDIVKY 9 Unmodified _DGRLDIVKY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.798095703125 2 539.798206 1077.58186 -0.21504 -0.00011608 -0.64687 -0.00034918 -0.86191 -0.00046526 539.7976543092221 41.679 0.19606 41.679 41.573 41.769 0 15 9 2 0 0 0 0.26811 1 22515 22515 24.991 3.454 1 4086200 5690 7825 3818 3906 6683 6683 0.0461712798901317 DGRLDIVKY 9 Unmodified _DGRLDIVKY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MSMS AL20221201_MKP_PDAC_01 4 360.535888671875 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 46.785 1 41.705 41.205 42.205 -5.0805 0 0 0 0.1417 1 28963 28963 37.771 15.113 1 5691 7825 3818 3906 6684 6684 0.0461712798901317 DGRWGARWQW 10 Unmodified _DGRWGARWQW_ 0 0 0 REV__ENST00000407327.8_1_19:10754607-10754775:+|nuORF REV__ENST00000407327.8_1_19:10754607-10754775:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8767700195312 3 439.879372 1316.61629 NaN NaN NaN NaN NaN NaN NaN 19.102 1 19.11 18.61 19.61 0.0078487 0 0 0 1.0019 1 9706 9706 0.15932 0 1 + 5692 26667 3819 3907 6685 6685 -0.029356110795333734 DGSLVFLEHVF 11 Unmodified _DGSLVFLEHVF_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MSMS AL20221201_MKP_PDAC_01 4 631.8240356445312 2 631.824421 1261.63429 NaN NaN NaN NaN NaN NaN NaN 45.862 1 40.907 40.407 41.407 -4.9549 0 0 0 0.67092 1 28233 28233 18.146 3.741 1 5693 5701 3820 3908 6686 6686 0.013936663319327636 DGTFEIDVF 9 Unmodified _DGTFEIDVF_ 0 0 0 REV__ENSG00000110344|ENST00000252108|UBE4A REV__ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7435302734375 2 521.740022 1041.46549 0.7513 0.00039198 2.5435 0.0013271 3.2948 0.001719 521.7414988953199 60.91 0.86973 60.91 60.225 61.095 0 96 37 3 0 0 0 0.2001 1 33770 33770 23.148 1.4018 1 3840400 + 5694 18705 3821 3909 6687 6687 -0.05358235301559944 DGTIIHLKC 9 Unmodified _DGTIIHLKC_ 0 0 0 PTPN6|p.Y98C|1|0.12|ENSG00000111679|chr12:6952144-6952144|A/G|missense_variant PTPN6|p.Y98C|1|0.12|ENSG00000111679|chr12:6952144-6952144|A/G|missense_variant PTPN6|p.Y98C|1|0.12|ENSG00000111679|chr12:6952144-6952144|A/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7667541503906 2 500.268227 998.521901 1.2867 0.00064367 -4.0823 -0.0020422 -2.7956 -0.0013986 500.76643912916666 37.752 0.55768 33.383 33.128 33.686 -4.3689 121 33 5 0 0 0 0.23158 1 22207 22207 20.454 4.6064 1 47487000 5695 16695 3822 3910 6688 6688 0.02258114054120597 DGVHLEYTG 9 Unmodified _DGVHLEYTG_ 0 0 0 REV__ENSG00000120337|ENST00000404377|TNFSF18 REV__ENSG00000120337|ENST00000404377|TNFSF18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7306213378906 2 495.729989 989.445425 NaN NaN NaN NaN NaN NaN NaN 31.243 1 31.14 30.64 31.64 -0.10269 0 0 0 0.82396 1 16235 16235 4.756 0 1 + 5696 19241 3823 3911 6689 6689 -0.04971986241525883 DGVVVQVM 8 Oxidation (M) _DGVVVQVM(Oxidation (M))_ DGVVVQVM(1) DGVVVQVM(44) 0 0 1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENST00000507947.5_1_4:76580183-76582836:-|nuORF;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.7205810546875 2 431.720578 861.426604 0.24474 0.00010566 -0.095254 -4.1123E-05 0.14948 6.4535E-05 431.72049927771974 39.478 0.71758 39.478 39.135 39.853 0 55 34 3 0 0 0 0.40035 2 21020 21020;21254 44.407 15.92 1 6247100 5697 5098;5738 3824 3912 6690;6691 6690 937 -0.009652391369058932 DGVVVQVM 8 Oxidation (M) _DGVVVQVM(Oxidation (M))_ DGVVVQVM(1) DGVVVQVM(42) 0 0 1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENST00000507947.5_1_4:76580183-76582836:-|nuORF;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS AL20221201_MKP_PDAC_01 4 431.720703125 2 431.720578 861.426604 NaN NaN NaN NaN NaN NaN NaN 47.291 1 42.211 41.711 42.711 -5.0805 0 0 0 0.47897 1 29338 29338 42.095 9.7891 1 5698 5098;5738 3824 3912 6692 6692 937 -0.009652391369058932 DGVVVQVM 8 Oxidation (M) _DGVVVQVM(Oxidation (M))_ DGVVVQVM(1) DGVVVQVM(42) 0 0 1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;nc|ENSG00000145907|Q13283-2|G3BP1;ENST00000519832.1_1_5:151166169-151170647:+|nuORF;ENST00000507947.5_1_4:76580183-76582836:-|nuORF;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MSMS AL20221201_MKP_PDAC_01 4 431.7207641601562 2 431.720578 861.426604 NaN NaN NaN NaN NaN NaN NaN 47.496 1 42.262 41.762 42.762 -5.2339 0 0 0 0.47897 1 29484 29484 42.095 13.608 1 5699 5098;5738 3824 3912 6693 6693 937 -0.009652391369058932 DGYDRYRSS 9 Unmodified _DGYDRYRSS_ 0 0 0 ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.248046875 2 559.746702 1117.47885 0.46563 0.00026063 -0.50803 -0.00028437 -0.042405 -2.3736E-05 559.7463390231859 19.055 0.15114 19.062 18.971 19.122 0.0078487 12 7 2 0 0 0 0.5029 1 9675 9675 7.2892 1.0834 1 478000 5700 15651 3825 3913 6694 6694 -0.07518984469606949 DGYDRYRSS 9 Unmodified _DGYDRYRSS_ 0 0 0 ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.746702 1117.47885 -0.35089 -0.00019641 -1.1145 -0.00062381 -1.4654 -0.00082022 559.7461319390233 19.055 0.18571 19.078 18.977 19.163 0.023106 0.0075941 -0.00038242 NaN 7.2892 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1230000 5701 15651 3825 3913 -0.07518984469606949 DGYIDYAEF 9 Unmodified _DGYIDYAEF_ 0 0 0 nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;nc|ENSG00000180398|Q8NI22-2|MCFD2;ENST00000493804.1_1_2:47132604-47142912:-|nuORF;ENST00000470873.1_1_2:47132604-47168896:-|nuORF nc|ENSG00000180398|Q8NI22-3|MCFD2 nc|ENSG00000180398|Q8NI22-3|MCFD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7293701171875 2 546.729655 1091.44476 0.17572 9.6071E-05 -1.0577 -0.00057829 -0.88202 -0.00048222 546.7289752495356 69.986 0.58649 69.986 69.598 70.185 0 166 61 4 0 0 0 0.23158 1 38992 38992 20.454 4.6064 1 34430000 5702 8899 3826 3914 6695 6695 -0.09730825681253918 DGYIDYYEF 9 Unmodified _DGYIDYYEF_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000497964.1_1_1:39924789-39929409:+|nuORF;nc|ENSG00000127603|O94854|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7432250976562 2 592.742762 1183.47097 0.076688 4.5456E-05 0.85439 0.00050643 0.93108 0.00055189 592.743332340924 75.873 0.30924 75.873 75.672 75.981 0 34 13 3 0 0 0 0.5029 1 42139 42139 7.2892 1.9923 1 1846900 5703 6155;16276;4022;16177 3827 3915 6696 6696 -0.11342556509771384 DGYLEVIGF 9 Unmodified _DGYLEVIGF_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7532043457031 2 506.752933 1011.49131 0.4212 0.00021345 0.76278 0.00038654 1.184 0.00059999 506.7532122243004 94.359 0.38132 94.359 94.178 94.56 0 74 32 3 0 0 0 0.30562 1 52202 52202 16.942 0 1 1313200 5704 5982;14851 3828 3916 6697 6697 -0.01397341059282553 DGYLEVIGF 9 Unmodified _DGYLEVIGF_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7530822753906 2 506.752933 1011.49131 NaN NaN NaN NaN NaN NaN NaN 94.86 1 94.492 93.992 94.992 -0.36814 0 0 0 0.6306 1 51819 51819 11.64 0 1 5705 5982;14851 3828 3916 6698 6698 -0.01397341059282553 DGYLEVIGF 9 Unmodified _DGYLEVIGF_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7530517578125 2 506.752933 1011.49131 NaN NaN NaN NaN NaN NaN NaN 95.032 1 94.664 94.164 95.164 -0.36814 0 0 0 0.7453 1 51911 51911 7.9102 0 1 5706 5982;14851 3828 3916 6699 6699 -0.01397341059282553 DGYLEVIGF 9 Unmodified _DGYLEVIGF_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7525939941406 2 506.752933 1011.49131 1.061 0.00053766 1.6917 0.00085728 2.7527 0.0013949 506.7525757804573 100.42 0.24183 94.243 94.088 94.33 -6.1757 24 14 3 0 0 0 0.095405 1 67152 67152 34.102 0 1 27428000 5707 5982;14851 3828 3916 6700 6700 -0.01397341059282553 DHAKKCRRF 9 Unmodified _DHAKKCRRF_ 0 0 0 ENST00000503362.1_1_4:177241184-177243347:+|nuORF ENST00000503362.1_1_4:177241184-177243347:+|nuORF ENST00000503362.1_1_4:177241184-177243347:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5415649414062 3 387.541703 1159.60328 1.1756 0.00045559 -0.21354 -8.2754E-05 0.96206 0.00037284 387.54170846665465 49.9 0.36317 44.361 44.167 44.531 -5.5391 34 22 2 0 0 0 0.41742 1 31219 31219 11.495 2.2509 1 17136000 5708 14468 3829 3917 6701 6701 0.029862345367064336 DHCDQFSF 8 Unmodified _DHCDQFSF_ 0 0 0 REV__ENSG00000002726|ENST00000360937|AOC1 REV__ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.6870422363281 2 499.687267 997.359981 0.32115 0.00016047 0.077444 3.8698E-05 0.39859 0.00019917 499.6870495960167 45.607 0.27505 45.607 45.512 45.787 0 19 13 2 0 0 0 0.79669 1 24885 24885 8.5933 1.304 1 4465200 + 5709 16935 3830 3918 6702 6702 -0.13880474698817125 DHCGALPYF 9 Carbamidomethyl (C) _DHC(Carbamidomethyl (C))GALPYF_ DHC(1)GALPYF DHC(55)GALPYF 0 1 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000496353.1_1_1:1254237-1254918:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2340087890625 2 540.234384 1078.45422 0.64359 0.00034769 -1.1382 -0.00061492 -0.49466 -0.00026723 540.2341674180066 67.197 0.409 61.021 60.808 61.217 -6.1757 48 22 3 0 0 0 0.031062 1 43685 43685 54.774 34.32 1 28756000 5710 3985 3831 3919 6703 6703 403 -0.08187335876709767 DHDRRFTQVG 10 Unmodified _DHDRRFTQVG_ 0 0 0 REV__ENSG00000122218|ENST00000241704|COPA REV__ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.870849609375 3 410.870654 1229.59013 0.03294 1.3534E-05 0.31472 0.00012931 0.34766 0.00014284 410.8709187604983 39.056 0.40246 39.068 38.9 39.303 0.011452 50 18 4 0 0 0 0.65023 1 20875 20875 8.4443 0 1 3485100 + 5711 19334 3832 3920 6704 6704 -0.015479250416774448 DHEELSGSSTN 11 Unmodified _DHEELSGSSTN_ 0 0 0 ENSG00000134138|ENST00000561208|MEIS2;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;nc|ENSG00000134138|O14770-6|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-5|MEIS2 ENSG00000134138|ENST00000561208|MEIS2 ENSG00000134138|ENST00000561208|MEIS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2442626953125 2 588.244189 1174.47382 NaN NaN NaN NaN NaN NaN NaN 5.1968 1 5.1193 4.6193 5.6193 -0.07749 0 0 0 0.9435 1 2565 2565 0 0 1 5712 4561 3833 3921 6705 6705 -0.10643333122857257 DHEGVHYSHL 10 Unmodified _DHEGVHYSHL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.8497314453125 3 398.515988 1192.52613 -0.14053 -5.6003E-05 -0.36444 -0.00014523 -0.50496 -0.00020124 398.51586139420033 51.372 0.26649 50.958 50.798 51.064 -0.41351 14 13 2 0 0 0 0.6192 1 27691 27691 10.151 5.8213 1 6434300 5713 3740 3834 3922 6706 6706 -0.062427051986333026 DHFQGQAVLLY 11 Unmodified _DHFQGQAVLLY_ 0 0 0 REV__CGRRF1|p.L217V|1|0.29|ENSG00000100532|chr14:54537800-54537800|T/G|missense_variant REV__CGRRF1|p.L217V|1|0.29|ENSG00000100532|chr14:54537800-54537800|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880920410156 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 25.34 1 25.34 24.84 25.84 0 0 0 0 0.93893 1 12987 12987 1.3296 0 1 + 5714 16763 3835 3923 6707 6707 0.007201845634881465 DHGKHVSP 8 Unmodified _DHGKHVSP_ 0 0 0 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 MSMS AL20221201_MKP_PDAC_01 4 438.719970703125 2 438.719759 875.424964 NaN NaN NaN NaN NaN NaN NaN 15.166 1 12.639 12.139 13.139 -2.5273 0 0 0 0.97444 1 7758 7758 5.2307 0.90143 1 5715 7362 3836 3924 6708 6708 -0.017731121106635328 DHGSDGMVKV 10 Unmodified _DHGSDGMVKV_ 0 0 0 REV__nc|ENSG00000089177|Q96L93-2|KIF16B REV__nc|ENSG00000089177|Q96L93-2|KIF16B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7403564453125 2 522.742573 1043.47059 NaN NaN NaN NaN NaN NaN NaN 3.7607 1 3.7483 3.2483 4.2483 -0.012334 0 0 0 1.0024 1 1911 1911 0.40072 0.40072 1 + 5716 29523 3837 3925 6709 6709 -0.04940254710595582 DHIAAAFLA 9 Unmodified _DHIAAAFLA_ 0 0 0 REV__ENST00000589073.1_1_19:10571682-10572428:+|nuORF REV__ENST00000589073.1_1_19:10571682-10572428:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.269775390625 2 464.747985 927.481417 0.1003 4.6614E-05 0.66562 0.00030935 0.76592 0.00035596 464.7485993854571 29.256 0.13906 29.286 29.18 29.319 0.030104 6 5 2 0 0 0 0.21242 1 15217 15217 2.3027 0 1 827790 + 5717 17392 3838 3926 6710 6710 0.014775157259805383 DHIDYTRCF 9 Unmodified _DHIDYTRCF_ 0 0 0 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5066223144531 3 390.506324 1168.49714 -0.37571 -0.00014672 2.0683 0.00080768 1.6926 0.00066096 390.50710895878734 23.785 0.17849 23.785 23.694 23.873 0 11 8 2 0 0 0 0.58466 1 12142 12142 1.1933 0 1 479720 + 5718 21368 3839 3927 6711 6711 -0.08036565819293173 DHILKWEL 8 Unmodified _DHILKWEL_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8628540039062 3 351.862437 1052.56548 2.288 0.00080507 -0.19642 -6.9115E-05 2.0916 0.00073596 351.86224925481474 47.677 0.53128 42.443 42.197 42.728 -5.2339 71 31 3 0 0 0 0.70294 1 29520 29520 13.042 7.3106 1 30848000 5719 6145 3840 3928 6712 6712 0.04130046822888289 DHISEEVF 8 Unmodified _DHISEEVF_ 0 0 0 REV__ENSG00000136010|ENST00000258494|ALDH1L2 REV__ENSG00000136010|ENST00000258494|ALDH1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2247924804688 2 488.224539 974.434526 -0.62554 -0.00030541 0.65901 0.00032174 0.033464 1.6338E-05 488.2253715780728 55.53 0.13562 55.53 55.437 55.573 0 8 5 2 0 0 0 0.67481 1 30867 30867 19.439 4.8573 1 744890 + 5720 20127 3841 3929 6713 6713 -0.05371388615799333 DHKQPEYI 8 Unmodified _DHKQPEYI_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENST00000468661.1_1_2:84744950-84771368:+|nuORF;ENST00000476689.5_1_2:84744950-84775489:+|nuORF ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2537841796875 2 515.253631 1028.49271 0.071232 3.6702E-05 1.1075 0.00057062 1.1787 0.00060732 515.2542322547811 52.363 0.17975 52.363 52.264 52.443 0 11 7 2 0 0 0 0.79783 1 29000 29000 7.9102 0 1 1184900 5721 3124 3842 3930 6714 6714 -0.020397069705268223 DHLIHVCWGL 10 Unmodified _DHLIHVCWGL_ 0 0 0 REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2050170898438 3 398.202576 1191.5859 0.67625 0.00026928 1.47 0.00058536 2.1462 0.00085464 398.2037151376961 22.473 0.2542 19.694 19.519 19.773 -2.7784 24 13 3 0 0 0 0.66229 1 12050 12050 7.1017 1.3699 1 11586000 + 5722 27536 3843 3931 6715 6715 -0.002231057889503063 DHLNLLKQF 9 Unmodified _DHLNLLKQF_ 0 0 0 ENSG00000104805|ENST00000405315|NUCB1 ENSG00000104805|ENST00000405315|NUCB1 ENSG00000104805|ENST00000405315|NUCB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7719116210938 2 564.314023 1126.61349 0.95555 0.00053923 0.57711 0.00032567 1.5327 0.0008649 564.3141386964165 64.837 0.21783 64.837 64.76 64.978 1.5259E-05 22 10 3 0 0 0 0.20554 1 35529 35529 5.7319 0 1 2747800 5723 2235 3844 3932 6716 6716 0.055251207429591886 DHLPEQAFY 9 Unmodified _DHLPEQAFY_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2596435546875 2 560.258914 1118.50327 0.72584 0.00040666 1.0053 0.00056324 1.7312 0.0009699 560.2585714077211 71.774 0.45226 71.298 71.047 71.499 -0.47609 25 17 2 0 0 0 0.32871 1 39318 39318 15.847 6.4997 1 591910 5724 2756 3845 3933 6717 6717 -0.051237243160812795 DHLPISTGSKL 11 Unmodified _DHLPISTGSKL_ 0 0 0 REV__ENSG00000181915|ENST00000373783|ADO REV__ENSG00000181915|ENST00000373783|ADO MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.1929626464844 3 389.883789 1166.62954 1.0145 0.00039553 3.1917 0.0012444 4.2062 0.0016399 390.2178308556536 28.506 0.24583 25.358 25.212 25.458 -3.1482 16 12 2 0 0 0 0.30139 1 15918 15918 2.6312 0 1 5329800 + 5725 23231 3846 3934 6718 6718 0.05288782189199992 DHLSLVCDFS 10 Unmodified _DHLSLVCDFS_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8056030273438 2 568.258056 1134.50156 1.0732 0.00060987 -1.1039 -0.0006273 -0.030667 -1.7427E-05 568.258549980279 71.432 0.57453 71.471 71.068 71.642 0.039024 46 25 3 0 0 0 0.22327 1 39151 39151 19.257 7.6167 1 2423100 5726 6086 3847 3935 6719 6719 -0.06031101396365557 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.775146484375 2 542.774731 1083.53491 0.20184 0.00010955 0.59969 0.0003255 0.80152 0.00043505 542.7748884018623 37.915 0.36508 37.915 37.743 38.108 0 39 17 3 0 0 0 0.18465 1 20217 20217 24.674 1.5255 1 6358100 5727 2180 3848 3936 6720 6720 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1861877441406 3 362.185579 1083.53491 0.41297 0.00014957 0.33514 0.00012138 0.74811 0.00027096 362.1856359072503 38.911 0.39215 38.911 38.703 39.096 0 50 17 4 0 0 0 0.37804 1 20769 20769 8.7454 3.0136 1 15386000 5728 2180 3848 3936 6721 6721 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.775146484375 2 542.774731 1083.53491 0.54897 0.00029797 -0.11645 -6.3205E-05 0.43253 0.00023476 542.7747611855092 38.906 0.26585 38.906 38.77 39.036 0 31 11 5 0 0 0 0.18465 1 20797 20797 24.674 2.9272 1 7784900 5729 2180 3848 3936 6722 6722 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5193481445312 3 362.185579 1083.53491 -0.039425 -1.4279E-05 -0.35304 -0.00012787 -0.39247 -0.00014215 362.18545669861317 39.106 0.26236 38.819 38.719 38.981 -0.28687 22 11 3 0 0 0 0.37804 1 20629 20629 13.042 0.80181 1 5065200 5730 2180 3848 3936 6723 6723 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.774731 1083.53491 0.54897 0.00029797 -0.11645 -6.3205E-05 0.43253 0.00023476 542.7747611855092 38.906 0.26585 38.906 38.77 39.036 0 0.028652 -6.6427E-05 NaN 24.674 31 11 5 NaN NaN NaN NaN 0 NaN NaN 0 7784900 5731 2180 3848 3936 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 362.185579 1083.53491 0.41297 0.00014957 0.33514 0.00012138 0.74811 0.00027096 362.1856359072503 38.911 0.39215 38.911 38.703 39.096 0 0.046152 0.00025554 NaN 8.7454 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 15386000 5732 2180 3848 3936 -0.0035173156215932977 DHLSSHLYL 9 Unmodified _DHLSSHLYL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.774731 1083.53491 -0.22373 -0.00012144 0.37556 0.00020385 0.15183 8.241E-05 542.7751468275976 39.136 0.22022 38.849 38.741 38.961 -0.28687 -0.028652 0.00046768 NaN 24.674 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3612400 5733 2180 3848 3936 -0.0035173156215932977 DHLYLFPF 8 Unmodified _DHLYLFPF_ 0 0 0 ENST00000497188.1_1_1:155234069-155238352:-|nuORF ENST00000497188.1_1_1:155234069-155238352:-|nuORF ENST00000497188.1_1_1:155234069-155238352:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.18017578125 3 351.179766 1050.51747 NaN NaN NaN NaN NaN NaN NaN 77.405 1 71.229 70.729 71.729 -6.1757 0 0 0 0.97444 1 50630 50630 1.6526 0.17072 1 5734 14393 3849 3937 6724 6724 -0.005770270971424907 DHMLTDPLEL 10 Unmodified _DHMLTDPLEL_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.283447265625 2 592.286814 1182.55907 0.14718 8.7173E-05 -2.1774 -0.0012897 -2.0302 -0.0012025 592.2848159017267 52.706 0.34965 52.706 52.53 52.88 0 35 15 3 0 0 0 0.33553 1 29180 29180 25.399 1.3787 1 3591500 5735 7970 3850 3938 6725 6725 -0.024902591907675742 DHMLTDPLEL 10 Unmodified _DHMLTDPLEL_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2847900390625 2 592.286814 1182.55907 NaN NaN NaN NaN NaN NaN NaN 54.467 1 54.467 53.967 54.967 0 0 0 0 0.94014 1 30241 30241 6.2058 0.47393 1 5736 7970 3850 3938 6726 6726 -0.024902591907675742 DHMTVLQSST 10 Unmodified _DHMTVLQSST_ 0 0 0 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2604370117188 2 559.760963 1117.50737 0.47194 0.00026417 -0.27745 -0.00015531 0.19448 0.00010886 559.7616338220603 58.77 0.36066 58.279 58.153 58.514 -0.49079 24 17 2 0 0 0 0.54083 1 31950 31950 16.149 6.766 1 2964600 + 5737 20938 3851 3939 6727 6727 -0.04668002884704947 DHNRDEYF 8 Unmodified _DHNRDEYF_ 0 0 0 REV__ENSG00000076053|ENST00000375490|RBM7 REV__ENSG00000076053|ENST00000375490|RBM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8225402832031 3 365.821189 1094.44174 NaN NaN NaN NaN NaN NaN NaN 79.788 1 79.299 78.799 79.799 -0.48932 0 0 0 0.97444 1 43703 43703 0.45834 0 1 + 5738 17582 3852 3940 6728 6728 -0.10170656015384338 DHPLVLVI 8 Unmodified _DHPLVLVI_ 0 0 0 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2587585449219 2 453.276378 904.538203 0.73441 0.00033289 2.0051 0.00090887 2.7395 0.0012418 453.2777382815871 50.054 0.18433 49.662 49.588 49.772 -0.3923 14 8 2 0 0 0 8.7369 1 26967 26967 5.2307 2.3415 1 856720 + 5739 22554 3853 3941 6729 6729 0.08211563282520729 DHPPWGSSC 9 Unmodified _DHPPWGSSC_ 0 0 0 nc|ENSG00000116774|Q9NRN5-3|OLFML3 nc|ENSG00000116774|Q9NRN5-3|OLFML3 nc|ENSG00000116774|Q9NRN5-3|OLFML3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.1967468261719 2 493.195259 984.375965 -0.36117 -0.00017813 1.1998 0.00059174 0.83863 0.00041361 493.1960114765272 41.56 0.28432 41.56 41.404 41.689 0 25 14 2 0 0 0 0.5029 1 22414 22414 7.2892 2.5332 1 6644000 5740 16145 3854 3942 6730 6730 -0.11684768461918793 DHQAPTEQQT 10 Unmodified _DHQAPTEQQT_ 0 0 0 REV__ENSG00000079435|ENST00000244289|LIPE REV__ENSG00000079435|ENST00000244289|LIPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5089721679688 3 385.50727 1153.49998 1.368 0.00052738 1.1608 0.00044751 2.5288 0.00097488 385.5076461841942 99.389 0.44162 93.213 92.957 93.399 -6.1757 46 27 2 0 0 0 0.63399 1 66290 66290 8.4443 8.4443 1 29701000 + 5741 17650 3855 3943 6731 6731 -0.07063019160796102 DHQVTHVFWI 10 Unmodified _DHQVTHVFWI_ 0 0 0 ENST00000342992.10_3_2:179437654-179437981:-|nuORF ENST00000342992.10_3_2:179437654-179437981:-|nuORF ENST00000342992.10_3_2:179437654-179437981:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.8838500976562 3 427.884012 1280.63021 NaN NaN NaN NaN NaN NaN NaN 17.875 1 17.88 17.38 18.38 0.0050564 0 0 0 0.99897 1 9036 9036 0.77653 0 1 5742 11990 3856 3944 6732 6732 0.0011162162888922467 DHRHRDHS 8 Unmodified _DHRHRDHS_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.5797729492188 2 530.244995 1058.47544 NaN NaN NaN NaN NaN NaN NaN 6.0971 1 6.1061 5.6061 6.6061 0.0089307 0 0 0 0.97444 1 3064 3064 0 0 1 5743 2960 3857 3945 6733 6733 -0.05146189732977291 DHRQRRALAEL 11 Unmodified _DHRQRRALAEL_ 0 0 0 REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.3839111328125 2 682.878916 1363.74328 1.5473 0.0010566 1.4962 0.0010217 3.0434 0.0020783 682.8801039145001 55.499 0.32785 49.578 49.393 49.721 -5.9211 33 19 2 0 0 0 0.5942 1 35287 35287 19.362 3.2128 1 31520000 + 5744 28270 3858 3946 6734 6734 0.0759569007477694 DHRQRRALAEL 11 Unmodified _DHRQRRALAEL_ 0 0 0 REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF REV__ENST00000519973.5_1_8:23423709-23423784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 455.5893249511719 3 455.588369 1363.74328 NaN NaN NaN NaN NaN NaN NaN 74.741 1 68.565 68.065 69.065 -6.1757 0 0 0 0.92939 1 48866 48866 5.8681 0.46543 1 + 5745 28270 3858 3946 6735 6735 0.0759569007477694 DHRTSEMES 9 Unmodified _DHRTSEMES_ 0 0 0 REV__ENST00000451540.1_1_13:75812162-75812900:-|nuORF REV__ENST00000451540.1_1_13:75812162-75812900:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.4854431152344 3 364.485589 1090.43494 -0.59816 -0.00021802 -1.9475 -0.00070983 -2.5456 -0.00092784 364.48504010330225 34.505 0.29262 34.505 34.402 34.695 0 26 14 2 0 0 0 0.57331 1 18205 18205 2.9952 1.151 1 1365500 + 5746 27209 3859 3947 6736 6736 -0.10666336958274769 DHRYDHEGY 9 Unmodified _DHRYDHEGY_ 0 0 0 REV__ENSG00000003756|ENST00000347869|RBM5 REV__ENSG00000003756|ENST00000347869|RBM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8316650390625 3 397.831976 1190.4741 -0.37537 -0.00014933 -1.0249 -0.00040773 -1.4002 -0.00055706 397.83179295438094 23.618 0.36275 23.618 23.489 23.852 0 43 18 4 0 0 0 0.49272 1 12005 12005 4.897 0.36815 1 3531600 + 5747 16939 3860 3948 6737 6737 -0.11351868612382532 DHSGAFHNKY 10 Unmodified _DHSGAFHNKY_ 0 0 0 ENSG00000162736|ENST00000294785|NCSTN;nc|ENSG00000162736|Q92542-2|NCSTN ENSG00000162736|ENST00000294785|NCSTN ENSG00000162736|ENST00000294785|NCSTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5142517089844 3 392.512467 1174.51557 NaN NaN NaN NaN NaN NaN NaN 29.248 1 29.279 28.779 29.779 0.030106 0 0 0 0.96981 1 15254 15254 1.9064 0 1 5748 6904 3861 3949 6738 6738 -0.06470687853038726 DHSGVALY 8 Unmodified _DHSGVALY_ 0 0 0 REV__ENSG00000125746|ENST00000245925|EML2 REV__ENSG00000125746|ENST00000245925|EML2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880920410156 2 431.208692 860.402832 -0.3563 -0.00015364 -0.0052782 -2.276E-06 -0.36158 -0.00015592 431.20842742563934 25.341 0.16385 25.341 25.202 25.366 0 10 7 2 0 0 0 8.7369 1 12987 12987 13.508 8.2772 1 735230 + 5749 19512 3862 3950 6739 6739 -0.03295336579117247 DHTPLHLHHCF 11 Unmodified _DHTPLHLHHCF_ 0 0 0 REV__ENSG00000176994|ENST00000406438|SMCR8 REV__ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8804931640625 3 452.880384 1355.61932 0.016577 7.5075E-06 -0.27457 -0.00012435 -0.258 -0.00011684 452.88042153770164 22.685 0.16421 22.685 22.57 22.734 0 14 7 3 0 0 0 0.72952 1 11538 11538 0.50596 0.051438 1 633980 + 5750 22957 3863 3951 6740 6740 -0.04426104017034049 DHYDYGYYD 9 Unmodified _DHYDYGYYD_ 0 0 0 REV__nc|ENSG00000125944|O43390-4|HNRNPR REV__nc|ENSG00000125944|O43390-4|HNRNPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1498718261719 3 404.148971 1209.42508 NaN NaN NaN NaN NaN NaN NaN 1.0821 1 1.0821 0.58207 1.5821 0 0 0 0 0.85798 1 524 524 0.23584 0 1 + 5751 19530 3864 3952 6741 6741 -0.17125201691987968 DHYDYGYYD 9 Unmodified _DHYDYGYYD_ 0 0 0 REV__nc|ENSG00000125944|O43390-4|HNRNPR REV__nc|ENSG00000125944|O43390-4|HNRNPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1505432128906 3 404.148971 1209.42508 NaN NaN NaN NaN NaN NaN NaN 1.7788 1 1.7788 1.2788 2.2788 0 0 0 0 0.85798 1 868 868 0.23584 0 1 + 5752 19530 3864 3952 6742 6742 -0.17125201691987968 DHYDYGYYD 9 Unmodified _DHYDYGYYD_ 0 0 0 REV__nc|ENSG00000125944|O43390-4|HNRNPR REV__nc|ENSG00000125944|O43390-4|HNRNPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1485900878906 3 404.148971 1209.42508 NaN NaN NaN NaN NaN NaN NaN 9.8393 1 9.8393 9.3393 10.339 0 0 0 0 0.85798 1 4678 4678 0.23584 0 1 + 5753 19530 3864 3952 6743 6743 -0.17125201691987968 DHYDYGYYD 9 Unmodified _DHYDYGYYD_ 0 0 0 REV__nc|ENSG00000125944|O43390-4|HNRNPR REV__nc|ENSG00000125944|O43390-4|HNRNPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1488647460938 3 404.148971 1209.42508 NaN NaN NaN NaN NaN NaN NaN 1.3119 1 1.2386 0.73863 1.7386 -0.07329 0 0 0 0.85798 1 657 657 0.23584 0 1 + 5754 19530 3864 3952 6744 6744 -0.17125201691987968 DHYTSWIY 8 Unmodified _DHYTSWIY_ 0 0 0 REV__nc|ENSG00000131725|Q5JSH3-3|WDR44 REV__nc|ENSG00000131725|Q5JSH3-3|WDR44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.740234375 2 542.740357 1083.46616 -0.85186 -0.00046234 -0.04288 -2.3273E-05 -0.89474 -0.00048561 542.7402924908736 77.513 0.34158 77.03 76.848 77.189 -0.4826 29 16 2 0 0 0 0.80143 1 42385 42385 5.7604 1.4312 1 3100300 + 5755 19807 3865 3953 6745 6745 -0.07223395861842619 DIAFYGKYSFV 11 Unmodified _DIAFYGKYSFV_ 0 0 0 REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.3260498046875 2 655.326796 1308.63904 -0.34319 -0.0002249 -0.81321 -0.00053292 -1.1564 -0.00075782 655.326655654378 41.87 0.26141 41.87 41.731 41.992 0 41 13 4 0 0 0 0.39949 1 22589 22589 21.537 7.6309 1 12291000 + 5756 27294 3866 3954 6746 6746 -0.0029344952531573654 DIAFYGKYSFV 11 Unmodified _DIAFYGKYSFV_ 0 0 0 REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 655.326796 1308.63904 -0.34319 -0.0002249 -0.81321 -0.00053292 -1.1564 -0.00075782 655.326655654378 41.87 0.26141 41.87 41.731 41.992 0 -0.16029 -0.00012197 NaN 21.537 41 13 4 NaN NaN NaN NaN 0 NaN NaN 0 12291000 + 5757 27294 3866 3954 -0.0029344952531573654 DIAFYGKYSFV 11 Unmodified _DIAFYGKYSFV_ 0 0 0 REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF REV__ENST00000460265.5_1_5:126112743-126113319:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 655.326796 1308.63904 1.1706 0.00076714 -0.45805 -0.00030018 0.71256 0.00046696 655.3267963613667 47.424 0.41981 42.19 42 42.42 -5.2339 0.16029 0.00034352 NaN 21.537 49 24 3 NaN NaN NaN NaN 0 NaN NaN 0 20454000 + 5758 27294 3866 3954 -0.0029344952531573654 DIAMKDEICY 10 Unmodified _DIAMKDEICY_ 0 0 0 REV__ENSG00000175467|ENST00000312397|SART1 REV__ENSG00000175467|ENST00000312397|SART1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7680053710938 2 600.7674 1199.52025 NaN NaN NaN NaN NaN NaN NaN 59.301 1 59.301 58.801 59.801 0 0 0 0 0.85122 1 33037 33037 10.074 0.6908 1 + 5759 22872 3867 3955 6747 6747 -0.07153307816793131 DIAPPLIAF 9 Unmodified _DIAPPLIAF_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5484008789062 1 956.545145 955.537869 0.26023 0.00024892 1.7098 0.0016355 1.97 0.0018844 956.5463409332577 98.662 0.21291 98.469 98.332 98.545 -0.19321 10 6 2 0 0 0 0.2143 1 53894 53894 21.747 3.6117 1 799960 5760 5275 3868 3956 6748 6748 0.058321435626680795 DIAPPLIAF 9 Unmodified _DIAPPLIAF_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.5455932617188 1 956.545145 955.537869 1.3372 0.0012791 -0.20186 -0.00019309 1.1353 0.001086 956.5446607152476 100.98 0.13567 94.801 94.734 94.869 -6.1757 13 7 2 0 0 0 0.0077963 1 67644 67644 109.63 45.393 1 43069000 5761 5275 3868 3956 6749 6749 0.058321435626680795 DIAQIPAT 8 Unmodified _DIAQIPAT_ 0 0 0 MFSD2B|p.A78T|1|0.12|ENSG00000205639|chr2:24016165-24016165|G/A|missense_variant MFSD2B|p.A78T|1|0.12|ENSG00000205639|chr2:24016165-24016165|G/A|missense_variant MFSD2B|p.A78T|1|0.12|ENSG00000205639|chr2:24016165-24016165|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 828.4464721679688 1 828.44616 827.438883 0.23128 0.0001916 -0.86904 -0.00071995 -0.63776 -0.00052835 828.4450957480215 73.294 0.23709 72.818 72.695 72.932 -0.47588 17 10 2 0 0 0 0.64853 1 40108 40108 21.747 1.293 1 867130 5762 15994 3869 3957 6750 6750 0.018261205977637474 DIAWTHTHTR 10 Unmodified _DIAWTHTHTR_ 0 0 0 ENST00000398484.6_1_4:1019594-1019900:+|nuORF ENST00000398484.6_1_4:1019594-1019900:+|nuORF ENST00000398484.6_1_4:1019594-1019900:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.3059692382812 2 619.307261 1236.59997 -0.62948 -0.00038984 -0.25173 -0.0001559 -0.88122 -0.00054574 619.3071324265305 32.15 0.29594 32.15 31.983 32.278 0 45 14 4 0 0 0 0.48505 1 16823 16823 17.113 0 1 14493000 5763 12851 3870 3958 6751 6751 -0.008867370363304872 DIAYTYDRSK 10 Unmodified _DIAYTYDRSK_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3025512695312 2 616.30131 1230.58807 0.2099 0.00012936 2.0014 0.0012334 2.2113 0.0013628 616.302925511371 53.352 0.20715 53.289 53.136 53.344 -0.063423 19 9 3 0 0 0 0.63399 1 28933 28933 9.3831 1.2276 1 2457900 5764 7710 3871 3959 6752 6752 -0.018003985701625425 DICTFKTEERY 11 Unmodified _DICTFKTEERY_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.22265625 3 468.886982 1403.63912 0.081193 3.807E-05 0.39675 0.00018603 0.47794 0.0002241 468.8871167995188 45.781 0.28297 45.457 45.337 45.62 -0.32425 37 16 3 0 0 0 0.56863 1 24450 24450 12.929 0.70111 1 47850000 + 5765 18948 3872 3960 6753 6753 -0.046558175876043606 DICTFKTEERY 11 Unmodified _DICTFKTEERY_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 468.886982 1403.63912 0.29384 0.00013778 -0.048336 -2.2664E-05 0.24551 0.00011511 468.88693817761384 45.482 0.24064 45.482 45.345 45.586 0 0.012502 -0.00026668 NaN 12.929 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 25052000 + 5766 18948 3872 3960 -0.046558175876043606 DIDDEEVWLYW 11 Unmodified _DIDDEEVWLYW_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.8295288085938 2 741.824815 1481.63508 -0.4073 -0.00030215 -1.67 -0.0012389 -2.0773 -0.001541 741.8226530736335 41.526 0.47194 41.223 40.964 41.436 -0.30304 73 21 6 0 0 0 0.71036 1 21937 21937 3.2813 0 1 58187000 5767 3680 3873 3961 6754 6754 -0.08647583809647585 DIDECNDGNN 10 Unmodified _DIDECNDGNN_ 0 0 0 ENST00000496332.5_1_1:155170600-155172038:-|nuORF;nc|ENSG00000169231|P49746-2|THBS3;ENSG00000169231|ENST00000368378|THBS3 ENST00000496332.5_1_1:155170600-155172038:-|nuORF ENST00000496332.5_1_1:155170600-155172038:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2598876953125 2 554.696017 1107.37748 0.83139 0.00046117 -2.6653 -0.0014784 -1.8339 -0.0010173 554.6945952612218 57.381 0.22974 57.381 57.281 57.51 0 21 9 4 0 0 0 0.23896 1 31973 31973 3.5965 1.5367 1 1650600 5768 7854 3874 3962 6755 6755 -0.1719122395447812 DIDEKKEW 8 Unmodified _DIDEKKEW_ 0 0 0 REV__nc|ENSG00000164946|Q5H8C1-4|FREM1 REV__nc|ENSG00000164946|Q5H8C1-4|FREM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.8006591796875 2 531.758746 1061.50294 0.52152 0.00027732 -0.40114 -0.00021331 0.12037 6.401E-05 531.7580739611656 41.23 0.14183 36.622 36.513 36.655 -4.6079 11 8 2 0 0 0 8.7369 1 24708 24708 28.487 0 1 6934000 + 5769 29754 3875 3963 6756 6756 -0.02535144035960002 DIEEYRDQL 9 Unmodified _DIEEYRDQL_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1878967285156 3 394.187537 1179.54078 -0.71035 -0.00028001 0.30335 0.00011958 -0.407 -0.00016043 394.18757141391956 30.047 0.16939 30.047 29.931 30.1 0 11 7 2 0 0 0 0.53557 1 15603 15603 5.2969 2.5617 1 2297800 + 5770 17605 3876 3964 6757 6757 -0.041806778411455525 DIEQDTYRY 9 Unmodified _DIEQDTYRY_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000594221.5_1_19:7706941-7707474:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7697143554688 2 601.769842 1201.52513 NaN NaN NaN NaN NaN NaN NaN 70.593 1 70.593 70.093 71.093 0 0 0 0 0.84369 1 39330 39330 2.3027 0 1 5771 1199 3877 3965 6758 6758 -0.06756964358191908 DIESKVTQTL 10 Unmodified _DIESKVTQTL_ 0 0 0 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5398559570312 3 378.539799 1132.59757 1.2237 0.0004632 -0.47915 -0.00018138 0.7445 0.00028182 378.53969976977174 45.67 0.4271 40.715 40.524 40.951 -4.9549 59 28 3 0 0 0 0.66569 1 28188 28188 3.5871 0.74377 1 20733000 5772 5092 3878 3966 6759 6759 0.03657369715392633 DIETRFAHTF 10 Unmodified _DIETRFAHTF_ 0 0 0 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8052368164062 2 618.80402 1235.59349 NaN NaN NaN NaN NaN NaN NaN 77.476 1 76.994 76.494 77.494 -0.4826 0 0 0 0.8671 1 42415 42415 9.3831 2.66 1 + 5773 22265 3879 3967 6760 6760 -0.014886749876723115 DIFAKFSAY 9 Unmodified _DIFAKFSAY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2692260742188 2 531.26875 1060.52295 0.46751 0.00024837 0.22338 0.00011868 0.69089 0.00036705 531.268781305422 68.295 0.35033 67.815 67.616 67.967 -0.48071 36 15 3 0 0 0 0.047788 1 37297 37297 45.7 27.565 1 6199100 5774 10454;7879 3880 3968 6761 6761 -0.004893483053365344 DIFAKFSAY 9 Unmodified _DIFAKFSAY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2695922851562 2 531.26875 1060.52295 0.33875 0.00017997 0.89627 0.00047616 1.235 0.00065613 531.2693956954311 67.801 0.34958 67.819 67.647 67.997 0.018028 47 16 4 0 0 0 0.047788 2 37196 37196;37294 45.7 27.565 1 13162000 5775 10454;7879 3880 3968 6762;6763 6762 -0.004893483053365344 DIFAKFSAY 9 Unmodified _DIFAKFSAY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2676391601562 2 531.26875 1060.52295 0.80487 0.0004276 -1.2225 -0.00064945 -0.41758 -0.00022185 531.2680799902331 77.893 0.57914 71.717 71.376 71.955 -6.1757 50 32 2 0 0 0 0.2324 1 51003 51003 20.415 4.5674 1 14815000 5776 10454;7879 3880 3968 6764 6764 -0.004893483053365344 DIFDGIRHL 9 Unmodified _DIFDGIRHL_ 0 0 0 REV__ENSG00000154719|ENST00000352957|MRPL39 REV__ENSG00000154719|ENST00000352957|MRPL39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.529541015625 3 362.529458 1084.56654 -0.74191 -0.00026896 0.25136 9.1125E-05 -0.49055 -0.00017784 362.52945078596366 28.04 0.18456 28.04 27.985 28.169 0 23 12 2 0 0 0 0.14602 1 14457 14457 20.415 12.469 1 3685400 + 5777 21241 3881 3969 6765 6765 0.027642611918054172 DIFDGIRHL 9 Unmodified _DIFDGIRHL_ 0 0 0 REV__ENSG00000154719|ENST00000352957|MRPL39 REV__ENSG00000154719|ENST00000352957|MRPL39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5301818847656 3 362.529458 1084.56654 0.5285 0.0001916 0.58484 0.00021202 1.1133 0.00040362 362.52947989035937 28.001 0.19165 27.954 27.846 28.038 -0.04641 10 6 2 0 0 0 0.16226 1 14458 14458 24.991 13.473 1 3770400 + 5778 21241 3881 3969 6766 6766 0.027642611918054172 DIFDGIRHL 9 Unmodified _DIFDGIRHL_ 0 0 0 REV__ENSG00000154719|ENST00000352957|MRPL39 REV__ENSG00000154719|ENST00000352957|MRPL39 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 362.529458 1084.56654 -0.74191 -0.00026896 0.25136 9.1125E-05 -0.49055 -0.00017784 362.52945078596366 28.04 0.18456 28.04 27.985 28.169 0 0.043074 -7.8348E-05 NaN 20.415 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3685400 + 5779 21241 3881 3969 0.027642611918054172 DIFDGIRHL 9 Unmodified _DIFDGIRHL_ 0 0 0 REV__ENSG00000154719|ENST00000352957|MRPL39 REV__ENSG00000154719|ENST00000352957|MRPL39 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 362.529458 1084.56654 0.5285 0.0001916 0.58484 0.00021202 1.1133 0.00040362 362.52947989035937 28.001 0.19165 27.954 27.846 28.038 -0.04641 -0.043074 0.00028435 NaN 20.415 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3770400 + 5780 21241 3881 3969 0.027642611918054172 DIFPDTEDYGF 11 Unmodified _DIFPDTEDYGF_ 0 0 0 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.3483276367188 2 659.777333 1317.54011 0.68595 0.00045258 -0.3882 -0.00025612 0.29776 0.00019645 659.7772697034559 64.424 0.17074 63.939 63.8 63.971 -0.48512 11 7 2 0 0 0 0.67922 1 35088 35088 6.2058 0 1 661950 + 5781 21399 3882 3970 6767 6767 -0.10595517280876265 DIFPDTEDYGF 11 Unmodified _DIFPDTEDYGF_ 0 0 0 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.3483276367188 2 659.777333 1317.54011 0.68595 0.00045258 -0.3882 -0.00025612 0.29776 0.00019645 659.7772697034559 64.424 0.17074 63.939 63.8 63.971 -0.48512 11 7 2 0 0 0 0.30049 1 35088 35088 6.2058 0 1 661950 + 5782 21399 3882 3970 6768 6768 -0.10595517280876265 DIFPEPVAF 9 Unmodified _DIFPEPVAF_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7633666992188 2 517.7633 1033.51205 0.72724 0.00037654 -2.7416 -0.0014195 -2.0144 -0.001043 517.762097084293 99.897 0.35056 93.722 93.588 93.938 -6.1757 41 25 2 0 0 0 0.14602 1 66742 66742 28.487 8.0332 1 27713000 5783 2442 3883 3971 6769 6769 -0.0033675067961667082 DIFSRFLCL 9 Unmodified _DIFSRFLCL_ 0 0 0 REV__ENST00000532983.1_1_16:30291089-30291266:-|nuORF REV__ENST00000532983.1_1_16:30291089-30291266:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2918701171875 2 557.291702 1112.56885 0.82376 0.00045907 -1.1778 -0.00065638 -0.35405 -0.00019731 557.2909552181095 67.496 0.49218 61.32 61.091 61.583 -6.1757 54 27 3 0 0 0 0.20428 1 44021 44021 22.736 1.1993 1 22503000 + 5784 28472 3884 3972 6770 6770 0.01706973605246276 DIFSYLVEY 9 Unmodified _DIFSYLVEY_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7809448242188 2 574.779148 1147.54374 1.072 0.00061616 2.2572 0.0012974 3.3292 0.0019135 574.7798520252893 101.28 0.099037 95.109 95.064 95.163 -6.1757 10 5 2 0 0 0 0.070838 1 67952 67952 39.957 18.211 1 19803000 5785 1876 3885 3973 6771 6771 -0.024128027163214938 DIGMKAVNEVF 11 Unmodified _DIGMKAVNEVF_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.264404296875 2 611.810456 1221.60636 -0.40464 -0.00024756 0.12163 7.4417E-05 -0.28301 -0.00017315 611.8108399060931 41.129 0.32065 41.129 41.005 41.325 0 50 15 4 0 0 0 0.29817 1 22243 22243 8.1555 1.4324 1 25421000 5786 5735 3886 3974 6772 6772 0.004420200801860119 DIGNLQGFIAD 11 Unmodified _DIGNLQGFIAD_ 0 0 0 REV__ENSG00000164296|ENST00000296736|TIGD6 REV__ENSG00000164296|ENST00000296736|TIGD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.7839050292969 3 388.196144 1161.5666 NaN NaN NaN NaN NaN NaN NaN 49.109 1 49.109 48.609 49.609 0 0 0 0 0.88164 1 26997 26997 4.1166 0 1 + 5787 21899 3887 3975 6773 6773 -0.007717835988387378 DIGRQDWPMFY 11 Unmodified _DIGRQDWPMFY_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 714.324951171875 2 714.324262 1426.63397 0.68735 0.00049099 2.0974 0.0014982 2.7847 0.0019892 714.3252455909867 49.923 0.23743 49.53 49.412 49.65 -0.3923 23 11 3 0 0 0 0.65846 1 26867 26867 8.1555 0.54658 1 3075900 5788 7843 3888 3976 6774 6774 -0.06228076659567705 DIHFPAWCIAF 11 Unmodified _DIHFPAWCIAF_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3164672851562 2 660.315709 1318.61686 NaN NaN NaN NaN NaN NaN NaN 53.611 1 53.611 53.111 54.111 0 0 0 0 0.76159 1 29728 29728 13.906 4.5229 1 + 5789 19890 3889 3977 6775 6775 -0.029699524747002215 DIHFPAWCIAF 11 Unmodified _DIHFPAWCIAF_ 0 0 0 REV__ENSG00000132911|ENST00000255262|NMUR2 REV__ENSG00000132911|ENST00000255262|NMUR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.5470886230469 3 440.546231 1318.61686 0.21209 9.3433E-05 2.2444 0.00098876 2.4565 0.0010822 440.54686044083707 54.14 0.23648 53.673 53.547 53.784 -0.46664 26 11 3 0 0 0 0.67922 1 29325 29325 7.9454 1.7536 1 3351200 + 5790 19890 3889 3977 6776 6776 -0.029699524747002215 DIHHLLQSV 9 Unmodified _DIHHLLQSV_ 0 0 0 ENST00000505136.1_1_5:137676887-137677028:+|nuORF ENST00000505136.1_1_5:137676887-137677028:+|nuORF ENST00000505136.1_1_5:137676887-137677028:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.2003784179688 2 531.290548 1060.56654 0.85489 0.00045419 -0.094741 -5.0335E-05 0.76014 0.00040386 531.2902769602549 40.636 0.35197 36.106 35.971 36.323 -4.5294 25 21 2 0 0 0 0.17718 1 24451 24451 14.838 0 1 6791100 5791 14509 3890 3978 6777 6777 0.03868261191792044 DIHQLSFLL 9 Unmodified _DIHQLSFLL_ 0 0 0 nc|ENSG00000162600|Q96E52-2|OMA1;ENSG00000162600|ENST00000371226|OMA1 nc|ENSG00000162600|Q96E52-2|OMA1 nc|ENSG00000162600|Q96E52-2|OMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3040161132812 2 543.303124 1084.5917 1.2498 0.00067903 0.73488 0.00039926 1.9847 0.0010783 543.3036649672313 95.801 0.54193 89.626 89.351 89.893 -6.1757 75 33 3 0 0 0 0.018301 1 63428 63428 65.235 2.6623 1 38914000 5792 6879 3891 3979 6778 6778 0.05278315994382865 DIIARAAEHL 10 Unmodified _DIIARAAEHL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2088317871094 3 370.208495 1107.60366 1.6407 0.00060739 -0.4819 -0.00017841 1.1588 0.00042898 370.2081282974118 30.738 0.32139 27.241 27.132 27.453 -3.497 24 14 2 0 0 0 0.30673 1 17343 17343 27.088 1.0677 1 42516000 5793 8678 3892 3980 6779 6779 0.0541593273756007 DIIEAINTF 9 Unmodified _DIIEAINTF_ 0 0 0 ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 MSMS AL20221201_MKP_PDAC_01 4 518.2723999023438 2 518.27149 1034.52843 NaN NaN NaN NaN NaN NaN NaN 38.601 1 34.232 33.732 34.732 -4.3689 0 0 0 0.16996 1 22792 22792 34.402 1.616 1 5794 2828 3893 3981 6780 6780 0.012543304864720994 DIIEKEIKV 9 Unmodified _DIIEKEIKV_ 0 0 0 REV__nc|ENSG00000173068|Q6ZN30-2|BNC2 REV__nc|ENSG00000173068|Q6ZN30-2|BNC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.8237915039062 2 543.823889 1085.63323 NaN NaN NaN NaN NaN NaN NaN 49.425 1 49.425 48.925 49.925 0 0 0 0 0.71962 1 27196 27196 8.7454 2.0222 1 + 5795 22701 3894 3982 6781 6781 0.09383451963026346 DIIRFLQP 8 Unmodified _DIIRFLQP_ 0 0 0 LRRK2|p.Q1324P|1|0.19|ENSG00000188906|chr12:40308478-40308478|A/C|missense_variant LRRK2|p.Q1324P|1|0.19|ENSG00000188906|chr12:40308478-40308478|A/C|missense_variant LRRK2|p.Q1324P|1|0.19|ENSG00000188906|chr12:40308478-40308478|A/C|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.7538146972656 2 501.292559 1000.57057 0.93097 0.00046669 -2.0179 -0.0010116 -1.0869 -0.00054487 501.29090234850634 61.811 0.60277 55.636 55.331 55.934 -6.1757 65 32 3 0 0 0 8.7369 1 39640 39640 10.824 0 1 61835000 5796 15981 3895 3983 6782 6782 0.07030350685522535 DIISMILFI 9 Unmodified _DIISMILFI_ 0 0 0 REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|189|1|anti-sense REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|189|1|anti-sense MSMS AL20221201_MKP_PDAC_01 4 532.8074340820312 2 532.806654 1063.59875 NaN NaN NaN NaN NaN NaN NaN 102.38 1 96.204 95.704 96.704 -6.1757 0 0 0 0.50124 1 68705 68705 15.847 4.2069 1 + 5797 29433 3896 3984 6783 6783 0.06949912550589943 DIISVFVLFG 10 Unmodified _DIISVFVLFG_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.544921875 3 370.546226 1108.61685 NaN NaN NaN NaN NaN NaN NaN 43.084 1 43.068 42.568 43.568 -0.015667 0 0 0 0.84946 1 23085 23085 10.151 0.6066 1 + 5798 18047 3897 3985 6784 6784 0.06688370796928211 DIISYVGVGF 10 Unmodified _DIISYVGVGF_ 0 0 0 nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 nc|ENSG00000069122|Q8IZF2-3|ADGRF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2833251953125 2 535.281857 1068.54916 0.27876 0.00014922 0.073181 3.9172E-05 0.35194 0.00018839 535.2818442422326 82.432 0.58565 82.432 82.225 82.811 0 55 24 3 0 0 0 0.68719 1 45889 45889 4.3292 0.38484 1 2682400 5799 997 3898 3986 6785 6785 0.017629208661446683 DIKDLGGI 8 Unmodified _DIKDLGGI_ 0 0 0 REV__ENSG00000198742|ENST00000361368|SMURF1 REV__ENSG00000198742|ENST00000361368|SMURF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4622802734375 1 830.46181 829.454533 0.093386 7.7553E-05 0.071596 5.9458E-05 0.16498 0.00013701 830.4617358290895 47.203 0.27747 47.203 47.062 47.339 0 20 12 2 0 0 0 0.11159 1 25813 25813 96.285 10.928 1 2492800 + 5800 24050 3899 3987 6786 6786 0.03298407114823476 DIKDLGGI 8 Unmodified _DIKDLGGI_ 0 0 0 REV__ENSG00000198742|ENST00000361368|SMURF1 REV__ENSG00000198742|ENST00000361368|SMURF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 830.46181 829.454533 0.093386 7.7553E-05 0.071596 5.9458E-05 0.16498 0.00013701 830.4617358290895 47.203 0.27747 47.203 47.062 47.339 0 0 0 NaN 96.285 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2492800 + 5801 24050 3899 3987 0.03298407114823476 DIKWTIERI 9 Unmodified _DIKWTIERI_ 0 0 0 REV__ENSG00000197943|ENST00000564138|PLCG2 REV__ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.3355102539062 2 587.334956 1172.65536 0.47464 0.00027877 0.87196 0.00051213 1.3466 0.0007909 587.3354764290339 71.803 0.29341 71.327 71.147 71.441 -0.47609 29 11 3 0 0 0 0.29507 1 39311 39311 24.021 24.021 1 2649500 + 5802 23971 3900 3988 6787 6787 0.07593676431474705 DILAKTRRY 9 Unmodified _DILAKTRRY_ 0 0 0 REV__ENSG00000089006|ENST00000377759|SNX5 REV__ENSG00000089006|ENST00000377759|SNX5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.82958984375 2 568.332747 1134.65094 0.86921 0.000494 -2.4298 -0.0013809 -1.5606 -0.00088691 568.3315563249713 100.68 0.082504 94.509 94.459 94.541 -6.1757 7 5 2 0 0 0 0.17331 1 67404 67404 12.241 3.4953 1 29870000 + 5803 17822 3901 3989 6788 6788 0.08900212008575181 DILDMQLME 9 Unmodified _DILDMQLME_ 0 0 0 REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF REV__ENST00000574657.1_1_17:44321001-44321457:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.17431640625 3 369.840204 1106.49878 1.3543 0.00050088 -1.9555 -0.00072323 -0.60119 -0.00022235 369.839439013918 91.191 0.42049 85.015 84.787 85.207 -6.1757 36 23 2 0 0 0 0.30202 1 60227 60227 12.175 2.7916 1 9702500 + 5804 19301 3902 3990 6789 6789 -0.05020692845505437 DILDNFNLL 9 Unmodified _DILDNFNLL_ 0 0 0 nc|ENSG00000187258|Q6W5P4-2|NPSR1;nc|ENSG00000187258|Q6W5P4-5|NPSR1;ENSG00000187258|ENST00000360581|NPSR1;nc|ENSG00000187258|Q6W5P4-4|NPSR1;nc|ENSG00000187258|Q6W5P4-3|NPSR1 nc|ENSG00000187258|Q6W5P4-2|NPSR1 nc|ENSG00000187258|Q6W5P4-2|NPSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.784912109375 2 538.784764 1075.55498 0.53178 0.00028651 2.6824 0.0014452 3.2142 0.0017318 538.7849160539183 66.987 0.55421 60.811 60.537 61.091 -6.1757 59 30 3 0 0 0 0.03568 1 43540 43540 52.268 4.5197 1 21285000 5805 9550 3903 3991 6790 6790 0.020220193778186513 DILFAVDMY 9 Unmodified _DILFAVDMY_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.76416015625 2 543.762443 1085.51033 0.29822 0.00016216 2.384 0.0012963 2.6822 0.0014585 543.7637252782562 36.02 0.13774 36.02 35.937 36.074 0 9 6 2 0 0 0 0.39863 1 19104 19104 12.532 0.89125 1 2758400 + 5806 22671 3904 3992 6791 6791 -0.029001277598808883 DILIWGHF 8 Unmodified _DILIWGHF_ 0 0 0 REV__ENST00000541077.1_1_12:109895986-109915086:-|nuORF REV__ENST00000541077.1_1_12:109895986-109915086:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7647399902344 2 500.766178 999.517802 0.38254 0.00019156 -1.8977 -0.00095031 -1.5152 -0.00075875 500.7652610638153 78.56 0.50529 78.612 78.327 78.832 0.052452 33 20 3 0 0 0 0.65867 1 43391 43391 20.871 6.2895 1 4644600 + 5807 28591 3905 3993 6792 6792 0.018023926227101583 DIMDINEI 8 Unmodified _DIMDINEI_ 0 0 0 nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7 nc|ENSG00000079950|O15400-2|STX7 nc|ENSG00000079950|O15400-2|STX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7289428710938 2 481.7286 961.442648 0.63158 0.00030425 0.26603 0.00012815 0.89761 0.0004324 481.72889578342455 49.461 0.23027 49.461 49.352 49.582 0 15 9 2 0 0 0 0.67481 1 27267 27267 19.439 2.4967 1 2061900 5808 1287 3906 3994 6793 6793 -0.039615776906771316 DIMDINEI 8 Unmodified _DIMDINEI_ 0 0 0 nc|ENSG00000079950|O15400-2|STX7;ENSG00000079950|ENST00000367941|STX7 nc|ENSG00000079950|O15400-2|STX7 nc|ENSG00000079950|O15400-2|STX7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 481.7286 961.442648 0.63158 0.00030425 0.26603 0.00012815 0.89761 0.0004324 481.72889578342455 49.461 0.23027 49.461 49.352 49.582 0 0 0 NaN 19.439 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2061900 5809 1287 3906 3994 -0.039615776906771316 DIMYSCTMY 9 Unmodified _DIMYSCTMY_ 0 0 0 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1471862792969 3 376.14664 1125.41809 0.075313 2.8329E-05 1.5165 0.00057041 1.5918 0.00059874 376.14725443638537 39.682 0.2174 39.682 39.575 39.792 0 24 10 3 0 0 0 0.58865 1 21307 21307 1.0715 0 1 4207500 + 5810 20904 3907 3995 6794 6794 -0.13960297160087975 DINGYILVY 9 Unmodified _DINGYILVY_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2811279296875 2 535.281857 1068.54916 0.27876 0.00014922 0.073181 3.9172E-05 0.35194 0.00018839 535.2818442422326 82.432 0.58565 82.432 82.225 82.811 0 55 24 3 0 0 0 0.12424 2 45669 45669;45771 30.637 6.616 1 2682400 5811 2444 3908 3996 6795;6796 6795 0.017629208661446683 DINGYILVY 9 Unmodified _DINGYILVY_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2816772460938 2 535.281857 1068.54916 0.47544 0.0002545 -0.56086 -0.00030022 -0.085417 -4.5722E-05 535.281579716982 82.913 0.90495 82.416 82.102 83.007 -0.49751 101 37 4 0 0 0 0.039985 2 45462 45462;45650 49.933 8.0934 1 6180900 5812 2444 3908 3996 6797;6798 6797 0.017629208661446683 DINGYILVY 9 Unmodified _DINGYILVY_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2841186523438 2 535.281857 1068.54916 NaN NaN NaN NaN NaN NaN NaN 82.637 1 82.699 82.199 83.199 0.062004 0 0 0 0.25233 1 45717 45717 27.629 6.0918 1 5813 2444 3908 3996 6799 6799 0.017629208661446683 DINGYILVY 9 Unmodified _DINGYILVY_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.281494140625 2 535.281857 1068.54916 0.71012 0.00038011 0.25152 0.00013463 0.96164 0.00051475 535.281901805103 91.162 0.68086 84.987 84.67 85.351 -6.1757 127 38 4 0 0 0 0.013041 4 60461 60082;60210;60337;60461 71.922 9.3496 1 317430000 5814 2444 3908 3996 6800;6801;6802;6803 6803 0.017629208661446683 DINKALYV 8 Unmodified _DINKALYV_ 0 0 0 nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1;ENST00000467370.5_1_3:125824416-125834086:-|nuORF nc|ENSG00000144908|O75891-2|ALDH1L1;ENST00000467370.5_1_3:125824416-125834086:-|nuORF nc|ENSG00000144908|O75891-2|ALDH1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5245971679688 1 935.519659 934.512382 1.3238 0.0012384 0.0017335 1.6217E-06 1.3255 0.00124 935.5186613202616 63.96 0.26539 57.785 57.634 57.899 -6.1757 21 14 2 0 0 0 0.6895 1 41345 41345 18.135 4.2289 1 8392800 5815 5658;13778 3909 3997 6804 6804 0.04250669040231969 DINNKKIRY 9 Unmodified _DINNKKIRY_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.285400390625 2 582.330205 1162.64586 1.0802 0.00062901 -1.3047 -0.00075974 -0.22451 -0.00013074 582.8293412445844 80.046 1.8144 73.87 72.422 74.236 -6.1757 198 107 2 0 0 0 0.19205 1 51655 51655 14.838 4.0143 1 24680000 5816 5100 3910 3998 6805 6805 0.07103908145927562 DIPELHFLFF 10 Unmodified _DIPELHFLFF_ 0 0 0 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.8905029296875 3 426.557013 1276.64921 0.10255 4.3742E-05 -2.3772 -0.001014 -2.2747 -0.00097029 426.89016875981144 55.319 0.1999 55.25 55.138 55.338 -0.068741 13 9 2 0 0 0 0.69385 1 30080 30080 3.5871 0.5148 1 1742100 5817 10319 3911 3999 6806 6806 0.021951581999246628 DIPNLRRLDF 10 Unmodified _DIPNLRRLDF_ 0 0 0 ENSG00000106809|ENST00000375561|OGN ENSG00000106809|ENST00000375561|OGN ENSG00000106809|ENST00000375561|OGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2348327636719 3 420.234933 1257.68297 -0.054087 -2.2729E-05 0.38133 0.00016025 0.32724 0.00013752 420.2348179846562 47.008 0.18122 47.008 46.922 47.103 0 11 8 2 0 0 0 0.69917 1 25733 25733 3.0723 0 1 1891400 5818 2462 3912 4000 6807 6807 0.06443579691699597 DIPSCHMPG 9 Unmodified _DIPSCHMPG_ 0 0 0 nc|ENSG00000131650|Q8NCW0-6|KREMEN2;nc|ENSG00000131650|Q8NCW0-4|KREMEN2;nc|ENSG00000131650|Q8NCW0-3|KREMEN2;nc|ENSG00000131650|Q8NCW0-5|KREMEN2;nc|ENSG00000131650|Q8NCW0-2|KREMEN2;ENSG00000131650|ENST00000303746|KREMEN2 nc|ENSG00000131650|Q8NCW0-6|KREMEN2 nc|ENSG00000131650|Q8NCW0-6|KREMEN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7024536132812 2 478.701863 955.389172 0.84522 0.00040461 -0.73431 -0.00035152 0.11091 5.3091E-05 478.70155145302 46.328 0.27072 46.328 46.21 46.481 0 30 12 3 0 0 0 0.39863 1 25342 25342 12.532 2.4576 1 3691100 5819 4339 3913 4001 6808 6808 -0.09030653674187761 DIPVQQITY 9 Unmodified _DIPVQQITY_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2872924804688 2 538.784764 1075.55498 0.21499 0.00011583 -0.74461 -0.00040118 -0.52962 -0.00028535 538.7844824074573 57.102 0.38987 56.617 56.43 56.82 -0.48554 58 17 4 0 0 0 0.39863 1 30988 30988 12.532 3.9383 1 34154000 5820 6148 3914 4002 6809 6809 0.020220193778186513 DIQAPNHVY 9 Unmodified _DIQAPNHVY_ 0 0 0 REV__ENSG00000186340|ENST00000617924|THBS2 REV__ENSG00000186340|ENST00000617924|THBS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2621459960938 2 528.759081 1055.50361 0.70069 0.0003705 1.6647 0.00088023 2.3654 0.0012507 529.2620765124609 57.11 0.29262 57.11 56.947 57.239 0 16 12 2 0 0 0 0.39863 1 31739 31739 12.532 3.9383 1 2267500 + 5821 23569 3915 4003 6810 6810 -0.021923045962239485 DIQHLQECL 9 Unmodified _DIQHLQECL_ 0 0 0 nc|ENSG00000154099|Q8NEP3-3|DNAAF1;ENSG00000154099|ENST00000378553|DNAAF1 nc|ENSG00000154099|Q8NEP3-3|DNAAF1 nc|ENSG00000154099|Q8NEP3-3|DNAAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2670288085938 2 549.766049 1097.51754 -0.11131 -6.1196E-05 -0.87476 -0.00048091 -0.98607 -0.00054211 549.7651093986979 55.907 0.55352 55.429 55.005 55.559 -0.47798 35 26 2 0 0 0 0.16785 1 30122 30122 23.148 3.7094 1 2240100 5822 6295 3916 4004 6811 6811 -0.02731395159457861 DIQMKQIPF 9 Unmodified _DIQMKQIPF_ 0 0 0 REV__ENSG00000076650|ENST00000170564|GPATCH1 REV__ENSG00000076650|ENST00000170564|GPATCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2982788085938 2 560.296985 1118.57942 1.0341 0.00057943 -0.095532 -5.3526E-05 0.93861 0.0005259 560.2970574911437 80.785 0.36267 80.293 80.102 80.465 -0.49247 35 15 3 0 0 0 0.41742 1 44307 44307 11.64 1.5664 1 3392500 + 5823 17593 3917 4005 6812 6812 0.024869562596677497 DIRCGEETRVI 11 Unmodified _DIRCGEETRVI_ 0 0 0 ENSG00000169902|ENST00000304842|TPST1 ENSG00000169902|ENST00000304842|TPST1 ENSG00000169902|ENST00000304842|TPST1 MSMS AL20221201_MKP_PDAC_01 4 430.887451171875 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 86.801 1 80.626 80.126 81.126 -6.1757 0 0 0 0.92234 1 57225 57225 2.8433 0 1 5824 7925 3918 4006 6813 6813 0.006550218520942508 DIRKRGPV 8 Unmodified _DIRKRGPV_ 0 0 0 ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 ENSG00000006071|ENST00000389817|ABCC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7891235351562 2 470.787976 939.561398 NaN NaN NaN NaN NaN NaN NaN 76.417 1 75.937 75.437 76.437 -0.47945 0 0 0 0.97348 1 41830 41830 5.7604 1.0044 1 5825 326 3919 4007 6814 6814 0.08920002119862147 DIRTGEELGF 10 Unmodified _DIRTGEELGF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7838745117188 2 568.782753 1135.55095 NaN NaN NaN NaN NaN NaN NaN 93.995 1 93.574 93.074 94.074 -0.42044 0 0 0 0.97302 1 51355 51355 3.5965 0 1 5826 10274 3920 4008 6815 6815 -0.011400701159118398 DIRTIFSY 8 Unmodified _DIRTIFSY_ 0 0 0 ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41;ENST00000512027.1_1_5:176940338-176940763:-|nuORF;ENST00000504807.5_1_5:176939673-176941736:-|nuORF;ENST00000505081.5_1_5:176940412-176942272:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.766357421875 2 507.766374 1013.5182 0.95214 0.00048346 0.93519 0.00047486 1.8873 0.00095832 507.7669519519716 49.742 0.34283 44.203 43.956 44.299 -5.5391 37 21 2 0 0 0 0.48669 1 31130 31130 36.044 1.9418 1 27528000 5827 9129 3921 4009 6816 6816 0.01197767551900597 DISAMEEEK 9 Unmodified _DISAMEEEK_ 0 0 0 ENSG00000122970|ENST00000242591|IFT81;nc|ENSG00000122970|Q8WYA0-3|IFT81 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2369384765625 2 526.234247 1050.45394 0.95325 0.00050163 4.0071 0.0021087 4.9604 0.0026103 526.2347417554083 42.956 0.30926 42.956 42.737 43.046 0 34 15 3 0 0 0 0.1773 1 23278 23278 25.399 1.3787 1 15252000 5828 3673 3922 4010 6817 6817 -0.06926800387213916 DISASEKK 8 Unmodified _DISASEKK_ 0 0 0 ENSG00000176177|ENST00000325157|ENTHD1 ENSG00000176177|ENST00000325157|ENTHD1 ENSG00000176177|ENST00000325157|ENTHD1 MSMS AL20221201_MKP_PDAC_01 4 439.2347717285156 2 439.234907 876.455261 NaN NaN NaN NaN NaN NaN NaN 83.509 1 77.334 76.834 77.834 -6.1757 0 0 0 0.93587 1 54917 54917 13.508 1.8676 1 5829 8573 3923 4011 6818 6818 0.012092017638678954 DISDWTYLEGQ 11 Unmodified _DISDWTYLEGQ_ 0 0 0 REV__PLCG2|p.M483T|1|0.31|ENSG00000197943|chr16:81905488-81905488|T/C|missense_variant REV__PLCG2|p.M483T|1|0.31|ENSG00000197943|chr16:81905488-81905488|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.8656005859375 3 442.866464 1325.57756 -0.51631 -0.00022866 -0.049324 -2.1844E-05 -0.56564 -0.0002505 442.8664894383331 28.03 0.30508 28.03 27.884 28.189 0 46 18 3 0 0 0 0.68427 1 14423 14423 2.6312 0.19645 1 15488000 + 5830 30074 3924 4012 6819 6819 -0.07220426015260273 DISFCFHHS 9 Unmodified _DISFCFHHS_ 0 0 0 REV__nc|ENSG00000168944|Q8N960-2|CEP120 REV__nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7333374023438 2 546.732009 1091.44946 0.74487 0.00040724 1.2206 0.00066732 1.9654 0.0010746 546.7326429896151 91.351 0.59575 85.175 84.873 85.469 -6.1757 96 33 4 0 0 0 0.45045 1 60451 60451 10.074 2.1638 1 20435000 + 5831 22363 3925 4013 6820 6820 -0.09260220019450571 DISKILNSV 9 Unmodified _DISKILNSV_ 0 0 0 REV__ENST00000245046.6_1_3:10004387-10004693:-|nuORF REV__ENST00000245046.6_1_3:10004387-10004693:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7875671386719 2 494.787307 987.560061 0.61302 0.00030332 -0.012195 -6.0341E-06 0.60083 0.00029728 494.78720541522404 49.16 0.20607 48.789 48.654 48.86 -0.37172 15 9 2 0 0 0 0.32871 1 26434 26434 15.847 0.5987 1 1610100 + 5832 24856 3926 4014 6821 6821 0.06578323240444206 DISPRSLSGRI 11 Unmodified _DISPRSLSGRI_ 0 0 0 nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000152578|ENST00000282499|GRIA4 nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000152578|ENST00000282499|GRIA4 nc|ENSG00000120251|P42262-4|GRIA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.89501953125 3 400.894688 1199.66223 1.2393 0.00049683 -1.142 -0.00045782 0.097294 3.9005E-05 400.8947150248464 20.27 0.47042 17.577 17.35 17.82 -2.693 104 30 5 0 0 0 0.53952 1 10809 10809 8.2864 0 1 38698000 5833 3501;6198 3927 4015 6822 6822 0.0703898931205913 DISQVALY 8 Unmodified _DISQVALY_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|356|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|356|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|356|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 908.4708862304688 1 908.472374 907.465098 0.40172 0.00036495 0.094081 8.547E-05 0.4958 0.00045042 908.4724390496003 50.255 0.1992 49.863 49.753 49.952 -0.3923 17 9 2 0 0 0 0.32798 1 27021 27021 52.268 1.4133 1 3633000 5834 15922 3928 4016 6823 6823 0.007663897692282262 DISYSVSFL 9 Unmodified _DISYSVSFL_ 0 0 0 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7581176757812 2 515.758215 1029.50188 0.26298 0.00013563 0.48153 0.00024835 0.74451 0.00038398 515.7584642995193 82.677 0.34872 82.677 82.48 82.828 0 32 14 3 0 0 0 0.28047 1 45850 45850 18.135 0 1 1673800 5835 16156 3929 4017 6824 6824 -0.011693584048316552 DISYSVSFL 9 Unmodified _DISYSVSFL_ 0 0 0 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7581787109375 2 515.758215 1029.50188 0.45244 0.00023335 0.32229 0.00016622 0.77473 0.00039957 515.7581961244666 83.208 0.49467 82.71 82.467 82.962 -0.49751 69 19 6 0 0 0 0.078417 2 45602 45507;45602 38.151 0 1 13034000 5836 16156 3929 4017 6825;6826 6826 -0.011693584048316552 DISYSVSFL 9 Unmodified _DISYSVSFL_ 0 0 0 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7586059570312 2 515.758215 1029.50188 0.85479 0.00044087 0.28418 0.00014657 1.139 0.00058743 515.758169284766 91.078 0.59519 84.903 84.593 85.188 -6.1757 92 34 3 0 0 0 0.2143 1 60011 60011 21.747 0 1 80225000 5837 16156 3929 4017 6827 6827 -0.011693584048316552 DITLDIDNY 9 Unmodified _DITLDIDNY_ 0 0 0 REV__ENSG00000001084|ENST00000650454|GCLC REV__ENSG00000001084|ENST00000650454|GCLC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2561645507812 2 541.256037 1080.49752 NaN NaN NaN NaN NaN NaN NaN 68.379 1 67.898 67.398 68.398 -0.48071 0 0 0 0.43505 1 37371 37371 18.135 0 1 + 5838 16925 3930 4018 6828 6828 -0.039508676184368596 DIVRCVPPF 9 Unmodified _DIVRCVPPF_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000505571.5_1_5:78915459-78919324:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7792358398438 2 523.278595 1044.54264 0.79731 0.00041721 0.82738 0.00043295 1.6247 0.00085016 523.7797846007556 57.467 0.22974 57.467 57.281 57.51 0 20 9 3 0 0 0 0.18118 1 31968 31968 18.135 1.1927 1 1994800 5839 7182 3931 4019 6829 6829 0.02214704433777115 DIVYKDMVT 9 Unmodified _DIVYKDMVT_ 0 0 0 ENSG00000050393|ENST00000379170|MCUR1 ENSG00000050393|ENST00000379170|MCUR1 ENSG00000050393|ENST00000379170|MCUR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7740478515625 2 542.273175 1082.5318 0.21514 0.00011667 1.2929 0.00070113 1.5081 0.0008178 542.2738058259258 92.908 0.71649 92.45 92.169 92.885 -0.4574 94 35 4 0 0 0 0.20139 1 50863 50863 10.824 3.5347 1 10194000 5840 722 3932 4020 6830 6830 -0.006167427311766005 DIWDIWVVCAF 11 Unmodified _DIWDIWVVCAF_ 0 0 0 L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|42|2|anti-sense L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|42|2|anti-sense L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|42|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8274536132812 2 683.828649 1365.64274 0.090626 6.1973E-05 -0.69793 -0.00047726 -0.6073 -0.00041529 683.8279014305054 35.913 1.4232 35.913 35.694 37.117 0 104 70 3 0 0 0 0.63851 1 19691 19691 9.3831 0 1 6435800 5841 15946 3933 4021 6831 6831 -0.02545103023089723 DIWEEKHIAF 10 Unmodified _DIWEEKHIAF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.8831481933594 3 429.883789 1286.62954 0.15245 6.5538E-05 -0.81911 -0.00035212 -0.66666 -0.00028659 429.8831781688904 58.877 0.26614 58.877 58.699 58.965 0 23 11 3 0 0 0 0.56348 1 32775 32775 11.518 5.6497 1 3086700 5842 16693 3934 4022 6832 6832 -0.0023121781080135406 DIWEEKHIAF 10 Unmodified _DIWEEKHIAF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.3221435546875 2 644.322045 1286.62954 -0.027411 -1.7662E-05 0.56583 0.00036458 0.53842 0.00034692 644.3225563802037 58.849 0.19667 58.849 58.748 58.945 0 16 8 3 0 0 0 0.095786 1 32776 32776 47.594 31.445 1 2123800 5843 16693 3934 4022 6833 6833 -0.0023121781080135406 DIWEEKHIAF 10 Unmodified _DIWEEKHIAF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8233032226562 2 644.322045 1286.62954 0.14481 9.3302E-05 -0.54344 -0.00035015 -0.39863 -0.00025685 644.3213749042056 59.451 0.25585 58.96 58.792 59.048 -0.49079 26 11 3 0 0 0 0.13297 1 32306 32306 41.956 23.809 1 3775300 5844 16693 3934 4022 6834 6834 -0.0023121781080135406 DIWEEKHIAF 10 Unmodified _DIWEEKHIAF_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.8834838867188 3 429.883789 1286.62954 0.29819 0.00012819 -0.072032 -3.0966E-05 0.22615 9.722E-05 430.21833716865535 59.434 0.25585 58.943 58.792 59.048 -0.49079 29 11 3 0 0 0 0.66569 1 32358 32358 3.5871 0.95582 1 4685900 5845 16693 3934 4022 6835 6835 -0.0023121781080135406 DIWSMGVVLY 10 Unmodified _DIWSMGVVLY_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7984008789062 2 591.796817 1181.57908 0.59348 0.00035122 2.5403 0.0015033 3.1338 0.0018545 591.7982401739392 47.951 0.25916 47.598 47.431 47.69 -0.3526 22 12 3 0 0 0 0.2178 1 25742 25742 32.305 9.1571 1 6016500 5846 7952 3935 4023 6836 6836 -0.00444463460166844 DIYCLKAWYRF 11 Unmodified _DIYCLKAWYRF_ 0 0 0 REV__ENSG00000134744|ENST00000257177|TUT4 REV__ENSG00000134744|ENST00000257177|TUT4 MSMS AL20221201_MKP_PDAC_01 4 739.3656616210938 2 739.368472 1476.72239 NaN NaN NaN NaN NaN NaN NaN 92.46 1 86.284 85.784 86.784 -6.1757 0 0 0 0.85601 1 61146 61146 9.3831 1.2276 1 + 5847 20004 3936 4024 6837 6837 0.00309963650897771 DIYGPLILF 9 Unmodified _DIYGPLILF_ 0 0 0 REV__ENSG00000178035|ENST00000326739|IMPDH2 REV__ENSG00000178035|ENST00000326739|IMPDH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7967529296875 2 525.797143 1049.57973 NaN NaN NaN NaN NaN NaN NaN 88.929 1 88.977 88.477 89.477 0.047852 0 0 0 0.071041 1 49475 49475 50.855 0 1 + 5848 23019 3937 4025 6838 6838 0.056926992511762364 DIYGPLILF 9 Unmodified _DIYGPLILF_ 0 0 0 REV__ENSG00000178035|ENST00000326739|IMPDH2 REV__ENSG00000178035|ENST00000326739|IMPDH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7976684570312 2 525.797143 1049.57973 0.73565 0.0003868 0.14507 7.6279E-05 0.88072 0.00046308 525.7971673458081 99.139 0.28941 92.963 92.807 93.097 -6.1757 48 16 4 0 0 0 0.038285 1 65895 65895 50.855 0 1 80721000 + 5849 23019 3937 4025 6839 6839 0.056926992511762364 DIYKQESTRPE 11 Unmodified _DIYKQESTRPE_ 0 0 0 nc|ENSG00000147573|Q9BYV6-4|TRIM55;nc|ENSG00000147573|Q9BYV6-2|TRIM55;nc|ENSG00000147573|Q9BYV6-3|TRIM55;ENSG00000147573|ENST00000315962|TRIM55 nc|ENSG00000147573|Q9BYV6-4|TRIM55 nc|ENSG00000147573|Q9BYV6-4|TRIM55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3368530273438 2 683.335881 1364.65721 -0.63899 -0.00043664 0.71542 0.00048887 0.076429 5.2226E-05 683.3365446682423 31.867 0.32612 31.867 31.758 32.084 0 26 15 2 0 0 0 0.62338 1 16594 16594 10.151 2.5416 1 2374100 5850 5862 3938 4026 6840 6840 -0.010533593412446862 DIYLNAGP 8 Unmodified _DIYLNAGP_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF ENSG00000065883|ENST00000181839|CDK13 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.4329833984375 1 862.430509 861.423233 0.069681 6.0095E-05 0.45974 0.0003965 0.52942 0.00045659 862.4309394656971 69.792 0.25104 69.792 69.636 69.887 0 26 11 3 0 0 0 0.78849 1 38823 38823 9.3474 3.587 1 1532900 5851 918 3939 4027 6841 6841 -0.013021659192872903 DKADRVYHQL 10 Unmodified _DKADRVYHQL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-6|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8215942382812 2 622.822744 1243.63093 0.53525 0.00033337 -0.00020148 -1.2549E-07 0.53505 0.00033324 622.822621609848 46.529 0.19624 46.193 46.112 46.309 -0.33664 15 9 2 0 0 0 0.32072 1 24920 24920 26.268 0.24744 1 5322800 5852 4011 3940 4028 6842 6842 0.01886416277943681 DKAEPSKE 8 Unmodified _DKAEPSKE_ 0 0 0 REV__ENSG00000233670|ENST00000580256|PIRT REV__ENSG00000233670|ENST00000580256|PIRT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2235107421875 2 452.224539 902.434526 NaN NaN NaN NaN NaN NaN NaN 33.86 1 33.889 33.389 34.389 0.028934 0 0 0 0.97444 1 17829 17829 2.3027 0.4585 1 + 5853 24414 3941 4029 6843 6843 -0.020593886158053465 DKASNNAKSSF 11 Unmodified _DKASNNAKSSF_ 0 0 0 REV__nc|ENSG00000180347|Q6ZRS4-4|ITPRID1 REV__nc|ENSG00000180347|Q6ZRS4-4|ITPRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7833862304688 2 584.783284 1167.55202 0.17186 0.0001005 0.80482 0.00047065 0.97668 0.00057115 584.7835937823854 31.228 0.59058 31.125 30.984 31.575 -0.10269 50 23 4 0 0 0 0.26767 1 16285 16285 28.495 0.86571 1 16885000 + 5854 29822 3942 4030 6844 6844 -0.025058557469947118 DKDKRLNSGT 10 Unmodified _DKDKRLNSGT_ 0 0 0 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.229248046875 3 378.53516 1132.58365 0.059188 2.2405E-05 -2.0094 -0.00076062 -1.9502 -0.00073821 378.5345319759363 18.021 0.19467 18.027 17.921 18.115 0.0060463 31 12 3 0 0 0 0.71535 1 9061 9061 0.50596 0.17668 1 2274400 + 5855 23579 3943 4031 6845 6845 0.022661370069499753 DKDLLINDL 9 Unmodified _DKDLLINDL_ 0 0 0 REV__nc|ENSG00000065675|Q04759-2|PRKCQ REV__nc|ENSG00000065675|Q04759-2|PRKCQ MSMS AL20221201_MKP_PDAC_01 4 529.7864379882812 2 529.790047 1057.56554 NaN NaN NaN NaN NaN NaN NaN 55.934 1 50.013 49.513 50.513 -5.9211 0 0 0 0.56093 1 35646 35646 13.906 3.8321 1 + 5856 17385 3944 4032 6846 6846 0.039060020322040145 DKDLLYRLL 9 Unmodified _DKDLLYRLL_ 0 0 0 REV__ENSG00000140396|ENST00000452400|NCOA2 REV__ENSG00000140396|ENST00000452400|NCOA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1978759765625 3 383.560646 1147.66011 0.16922 6.4907E-05 0.1333 5.1128E-05 0.30252 0.00011604 383.56078225931736 43.091 0.12065 42.78 42.678 42.799 -0.31039 8 5 2 0 0 0 0.21352 1 22921 22921 6.1918 0.40842 1 2281600 + 5857 20467 3945 4033 6847 6847 0.09218560574208823 DKEQRAQEL 9 Unmodified _DKEQRAQEL_ 0 0 0 REV__ENSG00000114166|ENST00000263754|KAT2B REV__ENSG00000114166|ENST00000263754|KAT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.783447265625 2 558.785827 1115.5571 0.43809 0.0002448 -2.7704 -0.0015481 -2.3323 -0.0013033 558.7843327062124 51.118 0.24468 51.064 50.921 51.166 -0.053871 16 11 2 0 0 0 0.49272 1 27682 27682 7.9102 0.62092 1 2268900 + 5858 18905 3946 4034 6848 6848 0.003944481156167967 DKEYYWNTL 9 Unmodified _DKEYYWNTL_ 0 0 0 REV__nc|ENSG00000182541|P53671-3|LIMK2 REV__nc|ENSG00000182541|P53671-3|LIMK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.19140625 3 411.192511 1230.5557 0.30889 0.00012701 0.65945 0.00027116 0.96833 0.00039817 411.19258797812824 23.188 0.8246 20.409 19.857 20.681 -2.7784 213 65 6 0 0 0 0.49272 1 12683 12683 4.897 0.70751 1 131750000 + 5859 29836 3947 4035 6849 6849 -0.05035185973156331 DKFDKSVQTKK 11 Unmodified _DKFDKSVQTKK_ 0 0 0 ENSG00000155621|ENST00000334731|C9orf85;nc|nan|Q96MD7|C9orf85 ENSG00000155621|ENST00000334731|C9orf85 ENSG00000155621|ENST00000334731|C9orf85 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7703552246094 3 441.913748 1322.71942 1.0276 0.00045413 -3.8215 -0.0016888 -2.7939 -0.0012347 441.912063738102 63.603 0.22851 63.593 63.49 63.719 -0.010529 18 10 2 0 0 0 0.30482 1 34783 34783 2.2527 0 1 3145000 5860 6397 3948 4036 6850 6850 0.07096411797738256 DKFEFQFLNN 10 Unmodified _DKFEFQFLNN_ 0 0 0 REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF REV__ENST00000479606.5_1_22:21333956-21351634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.5438232421875 3 434.543544 1300.6088 NaN NaN NaN NaN NaN NaN NaN 44.26 1 44.26 43.76 44.76 0 0 0 0 0.97592 1 24079 24079 1.5923 0.26264 1 + 5861 17993 3949 4037 6851 6851 -0.029478081904471765 DKFYMCQFL 9 Unmodified _DKFYMCQFL_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-4|DIS3L REV__nc|ENSG00000166938|Q8TF46-4|DIS3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.848876953125 3 398.848922 1193.52494 0.077511 3.0915E-05 0.76419 0.0003048 0.8417 0.00033571 398.8491347053178 48.979 0.24255 48.935 48.828 49.07 -0.04369 19 11 2 0 0 0 0.58466 1 26494 26494 1.1933 0 1 1385000 + 5862 22167 3950 4038 6852 6852 -0.0640837888340684 DKFYMCQFL 9 Unmodified _DKFYMCQFL_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-4|DIS3L REV__nc|ENSG00000166938|Q8TF46-4|DIS3L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 398.848922 1193.52494 0.6309 0.00025163 0.40329 0.00016085 1.0342 0.00041249 398.84902047262284 49.336 0.17849 48.965 48.882 49.06 -0.37172 0.01464 -0.00024239 NaN 1.1933 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1384700 + 5863 22167 3950 4038 -0.0640837888340684 DKGKYPIE 8 Unmodified _DKGKYPIE_ 0 0 0 REV__ENSG00000206073|ENST00000341074|SERPINB4 REV__ENSG00000206073|ENST00000341074|SERPINB4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2141723632812 2 475.2531 948.491647 0.25686 0.00012207 -2.017 -0.00095859 -1.7601 -0.00083651 475.25279427841497 63.233 0.19841 63.233 63.073 63.272 0 15 7 3 0 0 0 8.7369 1 35273 35273 18.135 8.7875 1 523890 + 5864 24249 3951 4039 6853 6853 0.015340786605634094 DKGVRAMP 8 Unmodified _DKGVRAMP_ 0 0 0 ENSG00000179057|ENST00000513874|IGSF22;nc|ENSG00000179057|Q8N9C0|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2327270507812 2 437.234187 872.453822 0.33974 0.00014855 -1.7722 -0.00077485 -1.4324 -0.0006263 437.23309933194815 49.164 0.30795 49.164 48.969 49.277 0 23 14 2 0 0 0 0.80975 1 26999 26999 0.79363 0 1 2209100 5865 8805 3952 4040 6854 6854 0.012492891941064954 DKGVRAMP 8 Unmodified _DKGVRAMP_ 0 0 0 ENSG00000179057|ENST00000513874|IGSF22;nc|ENSG00000179057|Q8N9C0|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 437.234187 872.453822 0.55302 0.0002418 -1.7922 -0.00078363 -1.2392 -0.00054183 437.23338752707184 49.097 0.4446 49.053 48.791 49.235 -0.04369 -0.055479 -3.0573E-06 NaN 0.79363 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 7525900 5866 8805 3952 4040 0.012492891941064954 DKHRQVGN 8 Unmodified _DKHRQVGN_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2677001953125 2 477.249215 952.483876 NaN NaN NaN NaN NaN NaN NaN 103.41 1 103.36 102.86 103.86 -0.047928 0 0 0 0.97444 1 57426 57426 2.3027 0 1 5867 4267 3953 4041 6855 6855 0.005733641836627612 DKIIPVEKL 9 Unmodified _DKIIPVEKL_ 0 0 0 nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.2208862304688 3 352.221742 1053.6434 NaN NaN NaN NaN NaN NaN NaN 21.079 1 21.079 20.579 21.579 0 0 0 0 0.82579 1 10643 10643 4.5289 0.65253 1 5868 1398 3954 4042 6856 6856 0.11872059688289482 DKIIYKLI 8 Unmodified _DKIIYKLI_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.800537109375 2 503.320786 1004.62702 0.71858 0.00036168 1.0415 0.00052419 1.76 0.00088587 503.8222090752921 70.376 0.14458 70.412 70.358 70.503 0.035507 10 6 2 0 0 0 8.7369 1 38762 38762 6.7232 0.51738 1 626510 5869 4107 3955 4043 6857 6857 0.12488978522173966 DKKELEPLGK 10 Unmodified _DKKELEPLGK_ 0 0 0 REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.189453125 3 386.223923 1155.64994 0.59265 0.0002289 0.76449 0.00029527 1.3571 0.00052416 386.22426210250615 23.805 0.36821 20.977 20.809 21.178 -2.8273 61 22 3 0 0 0 0.23609 1 12924 12924 8.4443 0.49891 1 40417000 + 5870 27973 3956 4044 6858 6858 0.07833952848977788 DKKELEPLGK 10 Unmodified _DKKELEPLGK_ 0 0 0 REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 386.223923 1155.64994 0.063781 2.4634E-05 0.89838 0.00034697 0.96216 0.00037161 386.2242474568023 20.863 0.16695 20.873 20.776 20.943 0.010551 -0.052037 7.6486E-05 NaN 8.4443 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4635000 + 5871 27973 3956 4044 0.07833952848977788 DKKETVWHL 9 Unmodified _DKKETVWHL_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MSMS AL20221201_MKP_PDAC_01 4 385.8788452148438 3 385.876746 1154.60841 NaN NaN NaN NaN NaN NaN NaN 23.27 1 20.492 19.992 20.992 -2.7784 0 0 0 0.46232 1 12587 12587 12.175 5.073 1 5872 10618 3957 4045 6859 6859 0.037288168803115695 DKKKMKLKVKK 11 Unmodified _DKKKMKLKVKK_ 0 0 0 ENST00000482655.2_1_13:28008892-28009731:+|nuORF;ENST00000470606.5_1_13:28000472-28009731:+|nuORF;nc|ENSG00000122034|Q92664-2|GTF3A;ENSG00000122034|ENST00000381140|GTF3A ENST00000482655.2_1_13:28008892-28009731:+|nuORF ENST00000482655.2_1_13:28008892-28009731:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 687.4563598632812 2 687.454882 1372.89521 NaN NaN NaN NaN NaN NaN NaN 104.04 1 103.99 103.49 104.49 -0.048737 0 0 0 0.94301 1 57767 57767 0.35063 0.081612 1 5873 3619 3958 4046 6860 6860 0.22367954778133026 DKKNGCLII 9 Unmodified _DKKNGCLII_ 0 0 0 REV__ENSG00000168118|ENST00000366690|RAB4A REV__ENSG00000168118|ENST00000366690|RAB4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2852783203125 2 502.283877 1002.5532 NaN NaN NaN NaN NaN NaN NaN 45.861 1 45.537 45.037 46.037 -0.32425 0 0 0 0.46757 1 24522 24522 16.942 1.1741 1 + 5874 22292 3959 4047 6861 6861 0.05202687088217317 DKKSFKLYISY 11 Unmodified _DKKSFKLYISY_ 0 0 0 REV__ENSG00000135298|ENST00000370598|ADGRB3 REV__ENSG00000135298|ENST00000370598|ADGRB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 696.3803100585938 2 696.382103 1390.74965 0.80808 0.00056273 -2.6764 -0.0018638 -1.8684 -0.0013011 696.3801225036157 97.816 0.22588 91.64 91.523 91.749 -6.1757 29 15 3 0 0 0 0.046614 1 64804 64804 51.63 5.9302 1 48437000 + 5875 20049 3960 4048 6862 6862 0.06990770462971341 DKKTWEHML 9 Unmodified _DKKTWEHML_ 0 0 0 ENST00000443361.1_1_9:108283251-108284913:+|nuORF ENST00000443361.1_1_9:108283251-108284913:+|nuORF ENST00000443361.1_1_9:108283251-108284913:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5183410644531 3 396.534103 1186.58048 -0.73765 -0.0002925 -4.1762 -0.001656 -4.9139 -0.0019485 396.53248003192533 33.091 0.27593 33.091 32.927 33.203 0 38 13 4 0 0 0 0.20883 1 17280 17280 8.1555 4.5685 1 5139900 5876 13421 3961 4049 6863 6863 -0.005348293713950625 DKKVSSAAMKL 11 Unmodified _DKKVSSAAMKL_ 0 0 0 REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2260131835938 3 393.225158 1176.65364 1.079 0.00042428 1.05 0.0004129 2.129 0.00083718 393.2254618206809 50.382 0.30454 50.333 50.21 50.515 -0.048824 25 14 2 0 0 0 0.69316 1 27232 27232 2.2527 0.34635 1 1352700 + 5877 19848 3962 4050 6864 6864 0.07238299351206479 DKLDYLYHY 9 Unmodified _DKLDYLYHY_ 0 0 0 ENSG00000137473|ENST00000325106|TTC29;nc|ENSG00000137473|Q8NA56-2|TTC29 ENSG00000137473|ENST00000325106|TTC29 ENSG00000137473|ENST00000325106|TTC29 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 615.8248901367188 2 615.295496 1228.57644 0.77403 0.00047626 -1.2978 -0.00079852 -0.52376 -0.00032226 615.2937675618308 99.512 0.19797 93.336 93.201 93.399 -6.1757 19 12 3 0 0 0 0.17275 1 66244 66244 21.747 7.8406 1 25979000 5878 4934 3963 4051 6865 6865 -0.028705955934810845 DKLHMLVKF 9 Unmodified _DKLHMLVKF_ 0 0 0 REV__nc|ENSG00000121964|Q4AE62-6|GTDC1 REV__nc|ENSG00000121964|Q4AE62-6|GTDC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2898559570312 2 565.823169 1129.63179 1.0117 0.00057244 -0.89256 -0.00050503 0.11913 6.7406E-05 565.8227959084055 52.615 0.20269 52.556 52.466 52.669 -0.058918 19 9 3 0 0 0 0.21052 1 28488 28488 6.7232 0.96273 1 3305900 + 5879 19321 3964 4052 6866 6866 0.07215539393291692 DKLKEYLKF 9 Unmodified _DKLKEYLKF_ 0 0 0 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2869262695312 2 592.339707 1182.66486 0.39741 0.0002354 -0.43599 -0.00025826 -0.038581 -2.2853E-05 592.3390117110611 63.229 0.21877 62.742 62.622 62.841 -0.48617 16 9 2 0 0 0 0.20358 1 34455 34455 10.074 1.9184 1 657620 5880 4775 3965 4053 6867 6867 0.08083444716976373 DKLLRGELTWL 11 Unmodified _DKLLRGELTWL_ 0 0 0 REV__ENSG00000162843|ENST00000437684|WDR64 REV__ENSG00000162843|ENST00000437684|WDR64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.3883666992188 2 672.387719 1342.76089 0.40617 0.0002731 0.086593 5.8224E-05 0.49276 0.00033133 672.3878534571368 79.064 0.35926 78.578 78.394 78.754 -0.48596 50 15 4 0 0 0 0.66428 1 43351 43351 7.609 2.7119 1 8804600 + 5881 21696 3966 4054 6868 6868 0.10321592557079384 DKLNNNKFSL 10 Unmodified _DKLNNNKFSL_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1974487304688 3 398.215539 1191.62479 -0.58037 -0.00023111 -0.10208 -4.0651E-05 -0.68245 -0.00027176 398.21542053560086 18.175 0.13905 18.175 18.077 18.216 0 26 15 2 0 0 0 0.23946 1 9038 9038 3.5871 1.0886 1 608910 5882 4983;12784 3967 4055 6869 6869 0.036638980464203996 DKLQTKMSKI 10 Unmodified _DKLQTKMSKI_ 0 0 0 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3432006835938 2 596.341923 1190.66929 0.86047 0.00051314 1.1262 0.00067162 1.9867 0.0011848 596.3424466925276 81.065 0.4533 81.125 80.917 81.371 0.059929 51 17 4 0 0 0 0.1942 1 44872 44872 34.402 3.1334 1 10184000 5883 6149 3968 4056 6870 6870 0.08158585868250157 DKLSSKYFST 10 Unmodified _DKLSSKYFST_ 0 0 0 REV__ENSG00000138079|ENST00000260649|SLC3A1 REV__ENSG00000138079|ENST00000260649|SLC3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.537109375 3 392.536278 1174.587 0.48525 0.00019048 1.3303 0.00052218 1.8155 0.00071266 392.5366986415881 30.735 0.26849 30.633 30.474 30.743 -0.10269 19 10 3 0 0 0 0.71123 1 15937 15937 0.69767 0 1 2362900 + 5884 20299 3969 4057 6871 6871 0.006693870609524311 DKLVYINGF 9 Unmodified _DKLVYINGF_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MSMS AL20221201_MKP_PDAC_01 4 356.8622741699219 3 356.862325 1067.56515 NaN NaN NaN NaN NaN NaN NaN 41.108 1 36.5 36 37 -4.6079 0 0 0 0.82739 1 24639 24639 2.4985 0.21571 1 + 5885 21382 3970 4058 6872 6872 0.03406627103026949 DKMLINCHF 9 Unmodified _DKMLINCHF_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS AL20221201_MKP_PDAC_01 4 374.178955078125 3 374.180783 1119.52052 NaN NaN NaN NaN NaN NaN NaN 16.455 1 13.898 13.398 14.398 -2.557 0 0 0 0.83812 1 8525 8525 2.9952 0 1 + 5886 17911 3971 4059 6873 6873 -0.034458433063036864 DKMYKDESE 9 Unmodified _DKMYKDESE_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MSMS AL20221201_MKP_PDAC_01 4 382.1653137207031 3 382.165745 1143.4754 NaN NaN NaN NaN NaN NaN NaN 46.722 1 41.642 41.142 42.142 -5.0805 0 0 0 0.76439 1 28914 28914 4.5289 0 1 + 5887 19938 3972 4060 6874 6874 -0.0905941535850161 DKNYHLPIY 9 Unmodified _DKNYHLPIY_ 0 0 0 REV__ENSG00000118804|ENST00000237642|STBD1 REV__ENSG00000118804|ENST00000237642|STBD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7577514648438 2 581.798206 1161.58186 0.045927 2.672E-05 1.6126 0.00093822 1.6585 0.00096494 581.799159504474 42.049 0.20368 42.049 41.957 42.161 0 17 10 2 0 0 0 0.18811 1 22695 22695 8.1555 1.9497 1 4996600 + 5888 19169 3973 4061 6875 6875 0.007531279890145015 DKPLGLFYL 9 Unmodified _DKPLGLFYL_ 0 0 0 ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3025512695312 2 533.302593 1064.59063 0.31227 0.00016653 0.13921 7.424E-05 0.45148 0.00024078 533.3025953729027 68.612 0.58847 68.131 67.877 68.465 -0.48071 82 26 4 0 0 0 0.1685 1 37513 37513 26.268 2.2476 1 22091000 5889 11394 3974 4062 6876 6876 0.060921016254724236 DKPLGLFYL 9 Unmodified _DKPLGLFYL_ 0 0 0 ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3025512695312 2 533.302593 1064.59063 0.44204 0.00023574 -0.40501 -0.00021599 0.037029 1.9748E-05 533.3023480574016 68.113 0.60139 68.138 67.877 68.479 0.025146 76 29 3 0 0 0 0.14 1 37435 37435 29.082 2.1979 1 18699000 5890 11394 3974 4062 6877 6877 0.060921016254724236 DKPLGLFYL 9 Unmodified _DKPLGLFYL_ 0 0 0 ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3029174804688 2 533.302593 1064.59063 0.21579 0.00011508 2.397 0.0012783 2.6128 0.0013934 533.3037463877537 76.854 0.19811 70.679 70.521 70.719 -6.1757 12 9 2 0 0 0 0.1685 1 50282 50282 26.268 2.2476 1 8775100 5891 11394 3974 4062 6878 6878 0.060921016254724236 DKPLGLFYL 9 Unmodified _DKPLGLFYL_ 0 0 0 ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF ENST00000276416.10_1_8:22478638-22478791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3026123046875 2 533.302593 1064.59063 0.61682 0.00032895 0.14161 7.5519E-05 0.75842 0.00040447 533.3025638373273 78.143 1.3391 71.967 70.899 72.238 -6.1757 138 77 2 0 0 0 0.10247 1 50649 50649 32.786 11.039 1 22981000 5892 11394 3974 4062 6879 6879 0.060921016254724236 DKPQNSKQGW 10 Unmodified _DKPQNSKQGW_ 0 0 0 REV__ENST00000258412.7_1_2:219138982-219139078:-|nuORF REV__ENST00000258412.7_1_2:219138982-219139078:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5326232910156 3 396.531638 1186.57309 -0.22489 -8.9176E-05 1.4913 0.00059135 1.2664 0.00050217 396.53261017906965 33.185 0.25598 33.026 32.888 33.144 -0.15918 21 10 3 0 0 0 0.66569 1 17302 17302 3.5871 0 1 2147300 + 5893 24941 3975 4063 6880 6880 -0.012738456474835402 DKQIRMED 8 Unmodified _DKQIRMED_ 0 0 0 REV__nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1 REV__nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.277587890625 2 517.750398 1033.48624 1.0487 0.00054296 1.2703 0.00065772 2.319 0.0012007 517.7509915344909 49.727 0.23717 49.678 49.568 49.805 -0.048828 13 11 2 0 0 0 8.7369 1 26949 26949 28.487 3.813 1 785990 + 5894 20293 3976 4064 6881 6881 -0.02915968193565277 DKQLLVFECLF 11 Unmodified _DKQLLVFECLF_ 0 0 0 REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF REV__ENST00000326047.8_1_3:44815907-44819655:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8571166992188 2 677.857406 1353.70026 NaN NaN NaN NaN NaN NaN NaN 73.861 1 73.385 72.885 73.885 -0.47588 0 0 0 0.93669 1 40424 40424 4.897 0.95262 1 + 5895 25555 3977 4065 6882 6882 0.03755739182497564 DKQMVQYIYKY 11 Unmodified _DKQMVQYIYKY_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.5836486816406 3 493.583122 1477.72754 0.51868 0.00025601 0.55888 0.00027586 1.0776 0.00053187 493.58337298905786 38.475 0.21622 34.106 33.964 34.18 -4.3689 19 13 2 0 0 0 0.6889 1 22679 22679 7.0371 2.6309 1 11078000 5896 3602 3978 4066 6883 6883 0.007782227228744887 DKQWCNGW 8 Unmodified _DKQWCNGW_ 0 0 0 REV__RP1L1|p.A2303S|1|0.18|ENSG00000183638|chr8:10607191-10607191|C/A|missense_variant REV__RP1L1|p.A2303S|1|0.18|ENSG00000183638|chr8:10607191-10607191|C/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2774047851562 2 518.718901 1035.42325 1.0001 0.00051876 -1.2204 -0.00063307 -0.22038 -0.00011431 518.7181923483831 55.722 0.39635 49.801 49.573 49.969 -5.9211 30 23 2 0 0 0 8.7369 1 35556 35556 7.9102 7.9102 1 10669000 + 5897 23362 3979 4067 6884 6884 -0.09304489190935783 DKRFFLKH 8 Unmodified _DKRFFLKH_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2095947265625 3 364.210059 1089.60835 -0.37583 -0.00013688 -1.0791 -0.00039303 -1.4549 -0.00052991 364.2097322770716 36.778 0.21727 36.529 36.427 36.644 -0.2497 21 9 3 0 0 0 0.79982 1 19332 19332 6.7232 0.09279 1 4202600 5898 7247 3980 4068 6885 6885 0.06712861670962411 DKRFRLKGILK 11 Unmodified _DKRFRLKGILK_ 0 0 0 nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 687.4423828125 2 687.440621 1372.86669 NaN NaN NaN NaN NaN NaN NaN 104.01 1 103.96 103.46 104.46 -0.048737 0 0 0 0.94301 1 57753 57753 0.35063 0 1 5899 9944 3981 4069 6886 6886 0.19516973193208287 DKRIYLVSKRK 11 Unmodified _DKRIYLVSKRK_ 0 0 0 REV__ENST00000334270.2_1_9:135278078-135282195:-|nuORF REV__ENST00000334270.2_1_9:135278078-135282195:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.4337768554688 2 703.435535 1404.85652 NaN NaN NaN NaN NaN NaN NaN 103.67 1 103.62 103.12 104.12 -0.047928 0 0 0 0.94301 1 57573 57573 0.35063 0.081612 1 + 5900 25627 3982 4070 6887 6887 0.1702836546794515 DKSASKEKS 9 Unmodified _DKSASKEKS_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-4|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2571105957031 2 490.256371 978.498189 0.81278 0.00039847 2.0504 0.0010052 2.8632 0.0014037 490.2576148114995 18.94 0.23439 16.319 16.205 16.439 -2.6215 23 14 2 0 0 0 0.30202 1 9971 9971 17.113 1.2657 1 2362300 5901 3407 3983 4071 6888 6888 0.008079718212911757 DKSEYLFKF 9 Unmodified _DKSEYLFKF_ 0 0 0 ENSG00000183434|ENST00000310125|TFDP3 ENSG00000183434|ENST00000310125|TFDP3 ENSG00000183434|ENST00000310125|TFDP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8007202148438 2 588.800414 1175.58628 0.14242 8.3859E-05 0.52811 0.00031095 0.67054 0.00039481 588.8006824609964 58.499 0.46541 58.499 58.233 58.699 0 65 18 5 0 0 0 0.30562 1 32616 32616 16.942 2.104 1 39161000 5902 9150 3984 4072 6889 6889 0.005505924119006522 DKSLRHVPPL 10 Unmodified _DKSLRHVPPL_ 0 0 0 REV__ENSG00000101220|ENST00000379772|ADISSP REV__ENSG00000101220|ENST00000379772|ADISSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3403930664062 2 581.340572 1160.66659 1.0488 0.0006097 -3.721 -0.0021632 -2.6722 -0.0015534 581.3400034296468 94 0.76096 87.824 87.303 88.064 -6.1757 60 44 3 0 0 0 0.48505 1 61959 61959 17.113 0.1706 1 25461000 + 5903 18148 3985 4073 6890 6890 0.09268498525625546 DKSYTFDKL 9 Unmodified _DKSYTFDKL_ 0 0 0 REV__nc|ENSG00000131408|P55055-2|NR1H2 REV__nc|ENSG00000131408|P55055-2|NR1H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7844848632812 2 558.782222 1115.54989 0.78204 0.00043699 1.6508 0.00092245 2.4329 0.0013594 558.7834223618879 50.948 0.22736 50.948 50.804 51.032 0 34 13 4 0 0 0 0.34999 1 28112 28112 14.838 3.198 1 11165000 + 5904 19790 3986 4074 6891 6891 -0.0032628448479954386 DKSYTFDKL 9 Unmodified _DKSYTFDKL_ 0 0 0 REV__nc|ENSG00000131408|P55055-2|NR1H2 REV__nc|ENSG00000131408|P55055-2|NR1H2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 558.782222 1115.54989 0.43809 0.0002448 3.6817 0.0020572 4.1197 0.002302 558.7843327062124 51.118 0.24468 51.064 50.921 51.166 -0.053871 0.057855 0.0010969 NaN 14.838 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2268900 + 5905 19790 3986 4074 -0.0032628448479954386 DKTENSISI 9 Unmodified _DKTENSISI_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7576904296875 2 503.756204 1005.49785 0.53059 0.00026729 2.1309 0.0010735 2.6615 0.0013408 503.7572567311159 69.46 0.32956 69.46 69.269 69.598 0 22 14 2 0 0 0 0.54444 1 38751 38751 4.756 0 1 896680 + 5906 19165 3987 4075 6892 6892 -0.004674478985634778 DKTFDESDFDD 11 Unmodified _DKTFDESDFDD_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.2578125 2 667.256962 1332.49937 -0.0059087 -3.9427E-06 0.7383 0.00049264 0.73239 0.00048869 667.2575140441777 37.221 0.23287 37.221 37.117 37.35 0 25 11 3 0 0 0 0.71341 1 19804 19804 2.9952 0.49676 1 3866900 5907 16367 3988 4076 6893 6893 -0.15357903391145555 DKTLWRWWAQY 11 Unmodified _DKTLWRWWAQY_ 0 0 0 ENSG00000187535|ENST00000426508|IFT140;ENST00000565298.5_1_16:1574507-1576156:-|nuORF;nc|ENSG00000187535|Q96RY7-2|IFT140 ENSG00000187535|ENST00000426508|IFT140 ENSG00000187535|ENST00000426508|IFT140 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8191528320312 3 518.261371 1551.76228 0.55784 0.00028911 0.85434 0.00044277 1.4122 0.00073188 518.2611881659263 46.049 0.069969 46.021 45.973 46.043 -0.028011 4 2 2 0 0 0 0.3053 1 24772 24772 3.5927 0.74939 1 393960 5908 9562 3989 4077 6894 6894 0.008472266458738886 DKVDLNLI 8 Unmodified _DKVDLNLI_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.540283203125 1 929.530224 928.522947 0.35085 0.00032613 -0.40914 -0.0003803 -0.058286 -5.4178E-05 929.5298228699025 61.634 0.34527 61.634 61.476 61.821 0 43 15 4 0 0 0 0.80383 1 34372 34372 4.3292 0 1 9912400 5909 8474 3990 4078 6895 6895 0.055826516946467564 DKVEVDSGPEL 11 Unmodified _DKVEVDSGPEL_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5319213867188 3 396.531192 1186.57175 -0.73765 -0.0002925 3.1632 0.0012543 2.4255 0.0009618 396.53248003192533 33.091 0.27593 33.091 32.927 33.203 0 38 13 4 0 0 0 0.65846 1 17355 17355 4.1166 0.52957 1 5139900 + 5910 19212 3991 4079 6896 6896 -0.014075245268941217 DKVVEELLVY 10 Unmodified _DKVVEELLVY_ 0 0 0 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 REV__nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.8344116210938 2 603.834454 1205.65436 0.20612 0.00012446 -0.23405 -0.00014133 -0.027932 -1.6866E-05 603.8343368896329 49.336 0.25001 49.336 49.215 49.465 0 25 11 3 0 0 0 0.078742 1 27115 27115 51.415 9.1028 1 8329400 + 5911 20315 3992 4080 6897 6897 0.059754172719067356 DKVVQFFIAL 10 Unmodified _DKVVQFFIAL_ 0 0 0 REV__ENST00000407257.5_1_2:38231358-38244379:+|nuORF REV__ENST00000407257.5_1_2:38231358-38244379:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.3424072265625 2 590.342249 1178.66995 0.29027 0.00017136 0.14153 8.3554E-05 0.43181 0.00025491 590.3423578600851 63.509 0.30689 63.023 62.864 63.171 -0.48617 35 13 3 0 0 0 0.69377 1 34705 34705 3.5965 0 1 7463800 + 5912 26666 3993 4081 6898 6898 0.08775748579637366 DKYNLNIVL 9 Unmodified _DKYNLNIVL_ 0 0 0 REV__nc|ENSG00000124783|P43307-2|SSR1 REV__nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.5419311523438 3 364.541363 1090.60226 0.15705 5.725E-05 0.037484 1.3665E-05 0.19453 7.0915E-05 364.5413713163413 24.865 0.20892 24.864 24.735 24.944 -0.0016766 17 8 3 0 0 0 0.19361 1 12706 12706 23.79 5.4167 1 15950000 + 5913 19469 3994 4082 6899 6899 0.060582986487816015 DKYRVLRLS 9 Unmodified _DKYRVLRLS_ 0 0 0 REV__nc|ENSG00000102858|O60291-4|MGRN1 REV__nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8940124511719 3 383.89614 1148.66659 0.23322 8.9532E-05 -4.0043 -0.0015372 -3.7711 -0.0014477 383.89477854171855 61.584 0.31632 61.551 61.374 61.691 -0.032787 31 15 3 0 0 0 0.40615 1 33610 33610 12.175 1.2758 1 6948300 + 5914 18259 3995 4083 6900 6900 0.09820498525596122 DLAATPPNQWI 11 Unmodified _DLAATPPNQWI_ 0 0 0 REV__ENST00000351193.6_1_3:160939179-160942746:+|nuORF REV__ENST00000351193.6_1_3:160939179-160942746:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.3140258789062 2 613.31422 1224.61389 0.94786 0.00058134 0.060461 3.7082E-05 1.0083 0.00061842 613.3145914393763 42.84 0.26483 42.84 42.682 42.947 0 29 13 3 0 0 0 0.4178 1 23232 23232 20.581 0.1664 1 4995500 + 5915 25782 3996 4084 6901 6901 0.010564956721282215 DLAPSLYIL 9 Unmodified _DLAPSLYIL_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7866516113281 2 502.786776 1003.559 0.45474 0.00022864 0.021797 1.0959E-05 0.47653 0.00023959 502.7867110448282 85.069 0.96288 85.069 84.668 85.631 0 168 46 5 0 0 0 0.052168 1 47197 47197 44.407 8.3628 1 120050000 + 5916 21991 3997 4085 6902 6902 0.057361088715197184 DLAPSLYIL 9 Unmodified _DLAPSLYIL_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7866516113281 2 502.786776 1003.559 NaN NaN NaN NaN NaN NaN NaN 85.124 1 85.187 84.687 85.687 0.063171 0 0 0 0.096036 1 47121 47121 44.407 0 1 + 5917 21991 3997 4085 6903 6903 0.057361088715197184 DLAPSLYIL 9 Unmodified _DLAPSLYIL_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7868347167969 2 502.786776 1003.559 0.22793 0.0001146 -0.18462 -9.2822E-05 0.043319 2.178E-05 502.7863847172685 93.234 2.4612 87.058 86.56 89.021 -6.1757 468 152 5 0 0 0 0.078417 4 61929 61929;62065;62200;62346 38.151 9.4286 1 3891199999.9999995 + 5918 21991 3997 4085 6904;6905;6906;6907 6904 0.057361088715197184 DLAQCFFCF 9 Unmodified _DLAQCFFCF_ 0 0 0 nc|ENSG00000089685|O15392-7|BIRC5;nc|ENSG00000089685|O15392-6|BIRC5;nc|ENSG00000089685|O15392-5|BIRC5;nc|ENSG00000089685|O15392-4|BIRC5;nc|ENSG00000089685|O15392-3|BIRC5;nc|ENSG00000089685|O15392|BIRC5;ENSG00000089685|ENST00000350051|BIRC5;nc|ENSG00000089685|O15392-2|BIRC5 nc|ENSG00000089685|O15392-7|BIRC5 nc|ENSG00000089685|O15392-7|BIRC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3109741210938 2 547.227713 1092.44087 0.26522 0.00014514 -0.042012 -2.299E-05 0.22321 0.00012214 547.2277359193969 62.907 0.3216 62.907 62.8 63.122 0 20 13 2 0 0 0 0.209 1 35209 35209 7.2892 3.6927 1 1152100 5919 1534 3998 4086 6908 6908 -0.10164909980312586 DLAREYENLVT 11 Unmodified _DLAREYENLVT_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1 REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.8314819335938 2 661.832974 1321.6514 -0.59524 -0.00039395 -0.96995 -0.00064194 -1.5652 -0.0010359 661.8324647455586 35.106 0.23171 35.106 34.958 35.19 0 19 11 2 0 0 0 0.61059 1 18550 18550 10.8 0 1 3690400 + 5920 17027 3999 4087 6909 6909 0.0034354214706127095 DLATKNLEL 9 Unmodified _DLATKNLEL_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7854614257812 2 508.784764 1015.55498 0.76256 0.00038798 -0.34641 -0.00017625 0.41614 0.00021173 508.7845758342036 49.762 0.43921 49.762 49.487 49.926 0 60 19 4 0 0 0 0.36964 1 27486 27486 13.906 1.6654 1 76091000 + 5921 17022 4000 4088 6910 6910 0.04782019377796587 DLCDDDEDCR 10 Unmodified _DLCDDDEDCR_ 0 0 0 REV__nc|ENSG00000157193|Q14114-2|LRP8 REV__nc|ENSG00000157193|Q14114-2|LRP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1198 1 1198.39869 1197.39142 2.0845 0.002498 -1.8214 -0.0021827 0.26313 0.00031534 1199.3958886721364 92.925 0.061607 92.948 92.897 92.959 0.022987 4 2 2 0 0 0 0.71123 1 51645 51645 1.6526 0 1 1858300 + 5922 21370 4001 4089 6911 6911 -0.1993831451773076 DLCFPWIHF 9 Unmodified _DLCFPWIHF_ 0 0 0 REV__ENST00000474645.6_1_6:86215687-86217871:-|nuORF REV__ENST00000474645.6_1_6:86215687-86217871:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.18798828125 3 393.188155 1176.54264 0.63725 0.00025056 -2.5561 -0.001005 -1.9188 -0.00075446 393.18730641440277 17.329 0.066658 14.742 14.708 14.775 -2.5866 14 8 2 0 0 0 0.53666 1 9051 9051 2.9952 0.71247 1 1850000 + 5923 27566 4002 4090 6912 6912 -0.03857295566240282 DLCLVVYFTLL 11 Unmodified _DLCLVVYFTLL_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.861083984375 2 649.856875 1297.6992 1.3441 0.00087347 4.2081 0.0027346 5.5522 0.0036081 649.8599955224512 100.53 0.10924 100.49 100.43 100.53 -0.04216 8 3 3 0 0 0 0.65846 1 55864 55864 8.1555 2.8586 1 15241000 + 5924 24118 4003 4091 6913 6913 0.062255248135898 DLCTHVETF 9 Unmodified _DLCTHVETF_ 0 0 0 ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX ENST00000558958.1_1_15:65449172-65477491:-|nuORF ENST00000558958.1_1_15:65449172-65477491:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2887573242188 2 532.739499 1063.46445 -0.091456 -4.8722E-05 0.23462 0.00012499 0.14316 7.6269E-05 532.7395806988043 39.428 0.259 39.131 39.049 39.308 -0.29716 18 11 2 0 0 0 0.17275 1 20790 20790 21.747 2.3076 1 1202400 5925 7540 4004 4092 6914 6914 -0.06474772942146956 DLCTQCYMH 9 Unmodified _DLCTQCYMH_ 0 0 0 nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;ENST00000508455.1_1_1:1558985-1559326:+|nuORF nc|ENSG00000197530|Q96AX9-4|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1114.264404296875 1 1113.4162 1112.40892 0.57886 0.00064452 1.7289 0.0019249 2.3077 0.0025695 1113.414036182446 56.577 0.086243 50.6 50.529 50.615 -5.9769 6 4 2 0 0 0 0.54816 1 36115 36115 7.2892 3.3448 1 14187000 5926 9964 4005 4093 6915 6915 -0.14278645725744354 DLDCKWNKKF 10 Unmodified _DLDCKWNKKF_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8852233886719 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 37.153 1 37.153 36.653 37.653 0 0 0 0 0.98857 1 19743 19743 1.9064 0 1 + 5927 22747 4006 4094 6916 6916 -0.0027487130862482445 DLDDLAILY 9 Unmodified _DLDDLAILY_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000485720.1_1_1:60125899-60125998:+|nuORF;ENST00000476939.5_1_1:60125899-60232874:+|nuORF;ENST00000493891.5_1_1:60103921-60223658:+|nuORF;ENST00000466791.5_1_1:60103921-60146476:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.850341796875 3 350.849974 1049.52809 0.06242 2.19E-05 1.4048 0.00049289 1.4673 0.00051479 350.8506670150994 37.76 0.46652 37.76 37.662 38.129 0 38 22 2 0 0 0 0.2324 1 20114 20114 20.415 8.9198 1 2532100 5928 8218 4007 4095 6917 6917 0.005309107666107593 DLDEVHYGS 9 Unmodified _DLDEVHYGS_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7236328125 2 517.724904 1033.43525 NaN NaN NaN NaN NaN NaN NaN 21.276 1 21.276 20.776 21.776 0 0 0 0 0.76439 1 10753 10753 7.2892 0.93513 1 + 5929 24007 4008 4096 6918 6918 -0.08012593966759596 DLDFYENPNL 10 Unmodified _DLDFYENPNL_ 0 0 0 REV__nc|ENSG00000204965|Q9Y5H7-2|PCDHA5 REV__nc|ENSG00000204965|Q9Y5H7-2|PCDHA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.2819213867188 2 620.280043 1238.54553 NaN NaN NaN NaN NaN NaN NaN 79.283 1 79.283 78.783 79.783 0 0 0 0 0.97302 1 44043 44043 3.5965 0 1 + 5930 24208 4009 4097 6919 6919 -0.06419793698387366 DLDLCVPIF 9 Unmodified _DLDLCVPIF_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.76611328125 2 517.764986 1033.51542 0.31555 0.00016338 -0.86656 -0.00044867 -0.55101 -0.00028529 517.7646412261843 92.377 0.50455 92.377 92.129 92.633 0 123 37 4 0 0 0 0.54444 1 50971 50971 4.756 0 1 9892000 5931 646 4010 4098 6920 6920 1.7610273062018678E-06 DLDLCVPIF 9 Unmodified _DLDLCVPIF_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1034.520141601562 1 1034.5227 1033.51542 -0.37699 -0.00039 -1.6715 -0.0017292 -2.0485 -0.0021192 1034.520640610645 92.374 0.36674 92.374 92.174 92.541 0 44 27 2 0 0 0 0.2143 1 51020 51020 21.747 4.8044 1 1157600 5932 646 4010 4098 6921 6921 1.7610273062018678E-06 DLDRRSNYMNW 11 Unmodified _DLDRRSNYMNW_ 0 0 0 REV__ENST00000561681.5_1_16:58540839-58541769:+|nuORF REV__ENST00000561681.5_1_16:58540839-58541769:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 735.3320922851562 2 735.33315 1468.65175 NaN NaN NaN NaN NaN NaN NaN 71.631 1 71.631 71.131 72.131 0 0 0 0 0.94301 1 39897 39897 0.35063 0 1 + 5933 18276 4011 4099 6922 6922 -0.06383361404687093 DLEAGSAGHRA 11 Unmodified _DLEAGSAGHRA_ 0 0 0 ENST00000308064.6_1_11:45673544-45686758:-|nuORF;ENST00000531322.1_1_11:45673541-45686758:-|nuORF ENST00000308064.6_1_11:45673544-45686758:-|nuORF ENST00000308064.6_1_11:45673544-45686758:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2642822265625 2 542.262519 1082.51048 0.23367 0.00012671 4.058 0.0022005 4.2916 0.0023272 542.2635211596584 63.607 0.23318 63.607 63.499 63.732 0 19 9 3 0 0 0 0.65108 1 35509 35509 8.7454 0.15213 1 790420 5934 11649 4012 4100 6923 6923 -0.027469917156622614 DLEALFQDFKD 11 Unmodified _DLEALFQDFKD_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MSMS AL20221201_MKP_PDAC_01 4 670.8197631835938 2 670.822075 1339.6296 NaN NaN NaN NaN NaN NaN NaN 93.763 1 87.587 87.087 88.087 -6.1757 0 0 0 0.76766 1 62082 62082 13.615 1.3742 1 5935 2805 4013 4101 6924 6924 -0.026632626014816196 DLEEDEDSDP 10 Unmodified _DLEEDEDSDP_ 0 0 0 REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2147827148438 2 582.214763 1162.41497 -0.0072647 -4.2296E-06 1.5233 0.0008869 1.5161 0.00088267 582.2159363235145 56.488 0.2483 56.488 56.361 56.609 0 21 10 3 0 0 0 0.63399 1 31424 31424 9.3831 2.66 1 1241900 + 5936 20429 4014 4102 6925 6925 -0.15973854207891236 DLEFNHDD 8 Unmodified _DLEFNHDD_ 0 0 0 REV__nc|ENSG00000119787|Q8NHH9-5|ATL2 REV__nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1004.565063476562 1 1004.39558 1003.3883 0.35447 0.00035603 -0.8609 -0.00086468 -0.50643 -0.00050866 1004.3968598910592 33.328 0.25363 33.357 33.208 33.461 0.028931 8 5 2 0 0 0 0.80975 1 17511 17511 0.79363 0 1 1135600 + 5937 19213 4015 4103 6926 6926 -0.11325453517895312 DLEFVYEMK 9 Unmodified _DLEFVYEMK_ 0 0 0 REV__ENSG00000035681|ENST00000038176|NSMAF REV__ENSG00000035681|ENST00000038176|NSMAF MSMS AL20221201_MKP_PDAC_01 4 587.2762451171875 2 587.278457 1172.54236 NaN NaN NaN NaN NaN NaN NaN 52.118 1 46.383 45.883 46.883 -5.7345 0 0 0 0.32177 1 32879 32879 24.021 3.5669 1 + 5938 17163 4016 4104 6927 6927 -0.03700760076753795 DLEIFEVWS 9 Unmodified _DLEIFEVWS_ 0 0 0 REV__nc|ENSG00000112964|P10912-4|GHR REV__nc|ENSG00000112964|P10912-4|GHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2796630859375 2 569.276772 1136.53899 1.2854 0.00073173 2.0754 0.0011815 3.3608 0.0019132 569.2785709933568 100.35 0.15318 94.172 94.088 94.241 -6.1757 21 9 3 0 0 0 0.095405 1 67077 67077 34.102 6.4736 1 61031000 + 5939 18844 4017 4105 6928 6928 -0.023816868590984086 DLEIFPAENF 10 Unmodified _DLEIFPAENF_ 0 0 0 ENSG00000081014|ENST00000261842|AP4E1;nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENST00000561397.1_1_15:51289960-51293240:+|nuORF ENSG00000081014|ENST00000261842|AP4E1 ENSG00000081014|ENST00000261842|AP4E1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8638305664062 2 597.787504 1193.56045 3.2736 0.0019569 3.4888 0.0020855 6.7624 0.0040425 597.7899640694643 97.903 0.65771 97.885 97.705 98.363 -0.018188 37 23 3 0 0 0 0.23922 1 54510 54510 3.9444 0.66309 1 2447600 5940 1312 4018 4106 6929 6929 -0.02858301830383425 DLEIKDQEI 9 Unmodified _DLEIKDQEI_ 0 0 0 nc|ENSG00000054282|Q86SQ7-3|SDCCAG8;nc|ENSG00000054282|Q86SQ7-4|SDCCAG8;ENSG00000054282|ENST00000366541|SDCCAG8 nc|ENSG00000054282|Q86SQ7-3|SDCCAG8 nc|ENSG00000054282|Q86SQ7-3|SDCCAG8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8299560546875 2 551.784961 1101.55537 0.5707 0.0003149 -1.3557 -0.00074807 -0.78504 -0.00043317 551.7837595020741 53.676 0.21207 53.225 53.109 53.321 -0.45173 17 10 2 0 0 0 0.19205 1 29094 29094 14.838 0 1 1506000 5941 758 4019 4107 6930 6930 0.008653943069930392 DLEIPPPGTPH 11 Unmodified _DLEIPPPGTPH_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.8006591796875 2 586.800946 1171.58734 NaN NaN NaN NaN NaN NaN NaN 56.189 1 56.189 55.689 56.689 0 0 0 0 0.84805 1 31243 31243 12.241 2.1667 1 5942 1608 4020 4108 6931 6931 0.008408067808204578 DLEKEFVDFWE 11 Unmodified _DLEKEFVDFWE_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2250366210938 3 486.22588 1455.65581 0.15564 7.5677E-05 -1.4768 -0.00071805 -1.3212 -0.00064238 486.2251990769094 38.163 0.22941 37.891 37.739 37.969 -0.27133 18 10 2 0 0 0 0.7326 1 20102 20102 0.40827 0 1 1587000 5943 9754 4021 4109 6932 6932 -0.05378993429985712 DLELALEGAL 10 Unmodified _DLELALEGAL_ 0 0 0 ENSG00000167914|ENST00000301659|GSDMA ENSG00000167914|ENST00000301659|GSDMA ENSG00000167914|ENST00000301659|GSDMA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2557983398438 2 522.284597 1042.55464 0.63594 0.00033214 -2.392 -0.0012493 -1.7561 -0.00091719 522.2836648306452 62.309 0.29997 61.821 61.615 61.915 -0.48764 20 13 2 0 0 0 0.23227 1 33913 33913 10.824 8.7642 1 1521000 5944 7683 4022 4110 6933 6933 0.03506599657953302 DLELLADW 8 Unmodified _DLELLADW_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4827880859375 1 974.482939 973.475663 0.30414 0.00029638 -0.37127 -0.00036179 -0.067129 -6.5416E-05 974.4827966988621 52.849 0.25367 52.849 52.728 52.982 0 27 11 3 0 0 0 0.80722 1 29338 29338 2.3027 0 1 5279000 + 5945 17944 4023 4111 6934 6934 -0.012136275763396043 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3386840820312 2 699.338424 1396.66229 0.042094 2.9438E-05 0.37151 0.00025981 0.41361 0.00028925 699.3384661022186 50.267 0.40217 50.267 50.009 50.411 0 52 18 4 0 0 0 0.59689 1 27749 27749 11.495 3.3392 1 14402000 5946 4794 4024 4112 6935 6935 -0.020170554786318462 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3386840820312 2 699.338424 1396.66229 0.49241 0.00034436 0.50728 0.00035476 0.99969 0.00069912 699.3386088643483 50.792 0.49148 50.378 50.17 50.661 -0.41351 88 23 5 0 0 0 0.66428 1 27403 27403 7.609 0.97858 1 26175000 5947 4794 4024 4112 6936 6936 -0.020170554786318462 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3388061523438 2 699.338424 1396.66229 -0.30018 -0.00020993 -1.1364 -0.00079474 -1.4366 -0.0010047 699.3378048262059 51.412 1.1286 50.999 50.661 51.79 -0.41351 197 58 7 0 0 0 0.66428 1 28099 28099 7.609 0.88579 1 6733799999.999999 5948 4794 4024 4112 6937 6937 -0.020170554786318462 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3386840820312 2 699.338424 1396.66229 0.32288 0.0002258 0.36825 0.00025753 0.69113 0.00048333 699.338597424985 53.856 0.35918 53.389 53.208 53.567 -0.46664 68 17 5 0 0 0 0.66428 1 29149 29149 7.609 0.97858 1 67521000 5949 4794 4024 4112 6938 6938 -0.020170554786318462 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.3388061523438 2 699.338424 1396.66229 0.2436 0.00017036 -0.30023 -0.00020996 -0.056632 -3.9605E-05 699.3381692325448 51.11 0.42316 51.057 50.823 51.246 -0.053871 87 20 6 0 0 0 0.66428 2 27569 27569;27665 7.609 0.88579 1 303140000 5950 4794 4024 4112 6939;6940 6939 -0.020170554786318462 DLENDDFFVRK 11 Unmodified _DLENDDFFVRK_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 699.338424 1396.66229 1.2973 0.00090725 0.19799 0.00013846 1.4953 0.0010457 699.3385374771184 50.38 0.42262 50.331 50.191 50.613 -0.048824 0.0057713 -0.00021659 NaN 11.495 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 10032000 5951 4794 4024 4112 -0.020170554786318462 DLEPLEDGQE 10 Unmodified _DLEPLEDGQE_ 0 0 0 REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7527465820312 2 572.753858 1143.49316 0.68258 0.00039095 -1.5223 -0.00087189 -0.8397 -0.00048094 572.7524689621505 83.128 0.36488 82.631 82.425 82.789 -0.49751 39 14 4 0 0 0 0.56348 1 45539 45539 13.042 1.4022 1 3466400 + 5952 22310 4025 4113 6941 6941 -0.07284376831989903 DLEREVDEL 9 Unmodified _DLEREVDEL_ 0 0 0 REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2981567382812 2 559.272218 1116.52988 -0.24715 -0.00013823 -2.9922 -0.0016735 -3.2394 -0.0018117 559.2713728876683 34.791 0.17107 34.791 34.675 34.846 0 10 8 2 0 0 0 0.15117 1 18379 18379 29.082 14.676 1 1251900 + 5953 23577 4026 4114 6942 6942 -0.023720802154230114 DLETPQKNFF 10 Unmodified _DLETPQKNFF_ 0 0 0 REV__nc|ENSG00000128654|O75431-2|MTX2 REV__nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8057861328125 2 619.806228 1237.5979 0.77706 0.00048163 -0.8698 -0.00053911 -0.09274 -5.7481E-05 619.8059301047175 75.375 0.51653 74.898 74.696 75.212 -0.47714 61 27 3 0 0 0 0.56348 1 41312 41312 13.042 0 1 4679000 + 5954 19627 4027 4115 6943 6943 -0.011392105647928474 DLFDDKELMR 10 Unmodified _DLFDDKELMR_ 0 0 0 REV__ENSG00000168495|ENST00000306433|POLR3D REV__ENSG00000168495|ENST00000306433|POLR3D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.8749084472656 3 427.876306 1280.60709 NaN NaN NaN NaN NaN NaN NaN 80.194 1 80.251 79.751 80.751 0.057587 0 0 0 0.8634 1 44319 44319 9.544 0.56773 1 + 5955 22317 4028 4116 6944 6944 -0.021991852707515136 DLFEQKVVF 9 Unmodified _DLFEQKVVF_ 0 0 0 ENSG00000275023|ENST00000621332|MLLT6 ENSG00000275023|ENST00000621332|MLLT6 ENSG00000275023|ENST00000621332|MLLT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8043212890625 2 562.802957 1123.59136 0.83795 0.0004716 1.1937 0.00067182 2.0317 0.0011434 562.803726919858 72.921 0.35704 72.445 72.273 72.63 -0.47588 32 15 3 0 0 0 0.08691 1 39883 39883 36.127 16.87 1 1323300 5956 10903 4029 4117 6945 6945 0.03450896274512161 DLFHEPHFRFP 11 Unmodified _DLFHEPHFRFP_ 0 0 0 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2402954101562 3 481.238566 1440.69387 -0.44365 -0.0002135 1.0805 0.00051999 0.63687 0.00030648 481.2390572044647 18.195 0.14973 18.209 18.131 18.281 0.013866 55 27 3 0 0 0 0.7326 1 9073 9073 0.40827 0.041592 1 2348100 + 5957 18024 4030 4118 6946 6946 -0.008850179340242903 DLFKDIQSL 9 Unmodified _DLFKDIQSL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.79345703125 2 539.792589 1077.57063 0.24169 0.00013046 0.66721 0.00036016 0.9089 0.00049062 539.7929753333132 79.44 0.382 79.44 79.256 79.638 0 39 15 4 0 0 0 0.078314 2 44090 44090;44191 38.176 14.155 1 2745200 5958 2694 4031 4119 6947;6948 6947 0.03494305894855643 DLFKDIQSL 9 Unmodified _DLFKDIQSL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.79248046875 2 539.792589 1077.57063 0.8053 0.0004347 -1.1236 -0.00060652 -0.31832 -0.00017183 539.792734744453 79.991 0.40117 79.502 79.333 79.734 -0.48932 60 15 5 0 0 0 0.0093064 2 43772 43772;43868 83.429 31.799 1 12828000 5959 2694 4031 4119 6949;6950 6949 0.03494305894855643 DLFKDIQSL 9 Unmodified _DLFKDIQSL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7940063476562 2 539.792589 1077.57063 1.1178 0.00060338 -1.2596 -0.00067994 -0.14182 -7.6556E-05 539.792226297816 94.318 0.65403 88.142 87.718 88.372 -6.1757 54 37 2 0 0 0 0.013609 3 62392 62267;62392;62527 70.332 14.155 1 36750000 5960 2694 4031 4119 6951;6952;6953 6952 0.03494305894855643 DLFKDIQSL 9 Unmodified _DLFKDIQSL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.792589 1077.57063 0.25111 0.00013555 0.48338 0.00026093 0.73449 0.00039647 539.7928300319205 79.441 0.21093 79.496 79.391 79.602 0.05497 0.016473 -1.2879E-05 NaN 83.429 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1527900 5961 2694 4031 4119 0.03494305894855643 DLFLDGVPL 9 Unmodified _DLFLDGVPL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.5352783203125 1 988.534975 987.527698 0.025119 2.4831E-05 0.56875 0.00056223 0.59387 0.00058706 988.535378415608 99.607 0.17096 99.607 99.503 99.674 0 13 5 3 0 0 0 0.026094 1 54988 54988 57.471 21.427 1 2418500 5962 8367 4032 4120 6954 6954 0.03343535837439049 DLFLDGVPL 9 Unmodified _DLFLDGVPL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 988.5380859375 1 988.534975 987.527698 0.23444 0.00023175 1.1618 0.0011485 1.3962 0.0013802 988.536061909777 99.735 0.14478 99.577 99.496 99.641 -0.1575 8 4 2 0 0 0 0.095405 1 54445 54445 34.102 15.967 1 1457200 5963 8367 4032 4120 6955 6955 0.03343535837439049 DLFLDGVPL 9 Unmodified _DLFLDGVPL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 988.5348510742188 1 988.534975 987.527698 1.0628 0.0010506 -0.75193 -0.00074331 0.31087 0.00030731 988.5341394077633 101.21 0.11633 95.039 94.99 95.107 -6.1757 12 7 2 0 0 0 0.042911 1 67875 67875 48.346 12.302 1 49814000 5964 8367 4032 4120 6956 6956 0.03343535837439049 DLFLDICHWIY 11 Unmodified _DLFLDICHWIY_ 0 0 0 REV__ENST00000550040.1_1_12:50153009-50155568:+|nuORF REV__ENST00000550040.1_1_12:50153009-50155568:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 719.3453979492188 2 719.347206 1436.67986 NaN NaN NaN NaN NaN NaN NaN 35.273 1 35.273 34.773 35.773 0 0 0 0 0.93613 1 18641 18641 5.2969 0.39987 1 + 5965 20425 4033 4121 6957 6957 -0.021014314773083242 DLFMRVTYYTM 11 Unmodified _DLFMRVTYYTM_ 0 0 0 REV__ENSG00000223601|ENST00000422359|EBLN1 REV__ENSG00000223601|ENST00000422359|EBLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 720.8423461914062 2 720.338523 1438.66249 -0.028105 -2.0245E-05 1.3798 0.00099393 1.3517 0.00097369 720.3391484552475 76.955 0.27456 70.779 70.68 70.955 -6.1757 22 14 2 0 0 0 0.5229 1 50355 50355 15.248 3.0078 1 9902200 + 5966 24373 4034 4122 6958 6958 -0.03929095074613542 DLFQDLSHF 9 Unmodified _DLFQDLSHF_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4;ENST00000590236.5_1_17:41621304-41622768:-|nuORF;ENST00000587151.5_1_17:41613788-41622985:-|nuORF nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.267333984375 2 561.266739 1120.51892 0.62548 0.00035106 1.67 0.00093731 2.2955 0.0012884 561.2678540867655 90.299 0.22267 89.798 89.661 89.884 -0.50171 19 9 3 0 0 0 0.25681 1 49383 49383 19.257 9.1831 1 685370 5967 8545 4035 4123 6959 6959 -0.03651437799044288 DLFRAFGHY 9 Unmodified _DLFRAFGHY_ 0 0 0 ENST00000359359.6_3_6:36891403-36891601:+|nuORF ENST00000359359.6_3_6:36891403-36891601:+|nuORF ENST00000359359.6_3_6:36891403-36891601:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.8545532226562 3 375.854053 1124.54033 NaN NaN NaN NaN NaN NaN NaN 18.23 1 15.608 15.108 16.108 -2.6215 0 0 0 0.82396 1 9591 9591 2.7352 0 1 5968 12144 4036 4124 6960 6960 -0.01696007979649039 DLFRDIQSL 9 Unmodified _DLFRDIQSL_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.796875 2 553.795663 1105.57677 1.1621 0.00064359 0.41585 0.0002303 1.578 0.00087389 553.795915206225 79.594 0.4436 79.105 78.889 79.333 -0.48933 52 19 4 0 0 0 0.011291 2 43532 43532;43640 76.825 14.252 1 13701000 5969 2167 4037 4125 6961;6962 6961 0.028208241263882883 DLFRDIQSL 9 Unmodified _DLFRDIQSL_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.795663 1105.57677 0.47837 0.00026492 1.6128 0.00089314 2.0911 0.0011581 553.7966196620793 79.07 0.22318 79.125 78.962 79.185 0.054977 0.010174 0.0010383 NaN 76.825 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1944600 5970 2167 4037 4125 0.028208241263882883 DLFRDITFY 9 Unmodified _DLFRDITFY_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2984008789062 2 595.298039 1188.58152 0.57096 0.00033989 0.054689 3.2557E-05 0.62565 0.00037245 595.2980803093036 86.292 0.43214 85.789 85.544 85.976 -0.50319 53 17 4 0 0 0 0.040683 2 47251 47145;47251 49.554 15.153 1 4258500 5971 2112 4038 4126 6963;6964 6964 -0.005222917308628894 DLFRDITFY 9 Unmodified _DLFRDITFY_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MSMS AL20221201_MKP_PDAC_01 4 595.3002319335938 2 595.298039 1188.58152 NaN NaN NaN NaN NaN NaN NaN 98.789 1 92.613 92.113 93.113 -6.1757 0 0 0 0.13463 1 65588 65588 38.615 10.986 1 5972 2112 4038 4126 6965 6965 -0.005222917308628894 DLFRKALEL 9 Unmodified _DLFRKALEL_ 0 0 0 ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF ENSG00000169189|ENST00000361439|NSMCE1 ENSG00000169189|ENST00000361439|NSMCE1 MSMS AL20221201_MKP_PDAC_01 4 552.8242797851562 2 552.824224 1103.63389 NaN NaN NaN NaN NaN NaN NaN 90.449 1 84.273 83.773 84.773 -6.1757 0 0 0 0.13831 1 59745 59745 38.176 1.6694 1 5973 7845 4039 4127 6966 6966 0.08622291402753035 DLFTESWDTQ 10 Unmodified _DLFTESWDTQ_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.516357421875 3 414.515542 1240.5248 0.48505 0.00020106 -0.3628 -0.00015039 0.12225 5.0676E-05 414.5157262979663 71.226 0.50398 70.749 70.568 71.072 -0.47736 55 21 4 0 0 0 0.67459 1 39040 39040 3.0723 0 1 8032700 5974 6065 4040 4128 6967 6967 -0.08584384078039875 DLFTESWDTQ 10 Unmodified _DLFTESWDTQ_ 0 0 0 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 ENSG00000150637|ENST00000582621|CD226 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5164489746094 3 414.515542 1240.5248 0.83891 0.00034774 0.63085 0.0002615 1.4698 0.00060924 414.51572234508774 70.688 0.30223 70.724 70.592 70.894 0.035515 22 13 2 0 0 0 0.67459 1 38899 38899 3.0723 0 1 3790000 5975 6065 4040 4128 6968 6968 -0.08584384078039875 DLFTVQQELC 10 Unmodified _DLFTVQQELC_ 0 0 0 ENST00000603821.1_1_4:153244231-153244309:-|nuORF;ENST00000296555.9_1_4:153244231-153245355:-|nuORF ENST00000603821.1_1_4:153244231-153244309:-|nuORF ENST00000603821.1_1_4:153244231-153244309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.2885131835938 2 598.286814 1194.55907 1.9786 0.0011838 0.023505 1.4063E-05 2.0021 0.0011978 598.2866331469071 95.211 0.29871 95.215 95.081 95.379 0.0041504 17 10 2 0 0 0 0.63399 1 52946 52946 9.3831 0.63772 1 831850 5976 11511 4041 4129 6969 6969 -0.030422591907608876 DLFYERKKYGF 11 Unmodified _DLFYERKKYGF_ 0 0 0 ENSG00000100410|ENST00000216252|PHF5A ENSG00000100410|ENST00000216252|PHF5A ENSG00000100410|ENST00000216252|PHF5A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.8591613769531 4 367.192314 1464.74015 1.7834 0.00065485 -0.51771 -0.0001901 1.2657 0.00046475 367.1921765544412 20.666 0.37259 17.973 17.762 18.134 -2.693 61 23 3 0 0 0 0.30584 1 11107 11107 1.3296 0 1 7209500 5977 1818 4042 4130 6970 6970 0.02637002177402792 DLGFLSRFSF 10 Unmodified _DLGFLSRFSF_ 0 0 0 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 REV__nc|ENSG00000160183|P57727-4|TMPRSS3 MSMS AL20221201_MKP_PDAC_01 4 594.8069458007812 2 594.806031 1187.59751 NaN NaN NaN NaN NaN NaN NaN 70.298 1 64.122 63.622 64.622 -6.1757 0 0 0 0.31648 1 45934 45934 36.127 3.3413 1 + 5978 21517 4043 4131 6971 6971 0.011214145060421288 DLGHCSGPGHK 11 Unmodified _DLGHCSGPGHK_ 0 0 0 REV__CON__Q148H6 REV__CON__Q148H6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2529296875 2 554.25364 1106.49273 NaN NaN NaN NaN NaN NaN NaN 82.444 1 82.444 81.944 82.944 0 0 0 0 0.93969 1 45738 45738 2.7352 0.43246 1 + + 5979 16860 4044 4132 6972 6972 -0.05626030242160596 DLGKLAFKY 9 Unmodified _DLGKLAFKY_ 0 0 0 REV__ENST00000465729.1_1_10:23235084-23235225:+|nuORF REV__ENST00000465729.1_1_10:23235084-23235225:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2671508789062 2 527.800217 1053.58588 1.015 0.00053574 -3.6476 -0.0019252 -2.6325 -0.0013895 527.7978366500879 60.334 0.28673 54.219 54.158 54.445 -6.1147 19 14 2 0 0 0 0.18882 1 38891 38891 15.847 1.9411 1 10952000 + 5980 27395 4045 4133 6973 6973 0.06123217482695509 DLGLSLDKRPA 11 Unmodified _DLGLSLDKRPA_ 0 0 0 REV__nc|ENSG00000065883|Q14004-2|CDK13 REV__nc|ENSG00000065883|Q14004-2|CDK13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3155517578125 2 592.83532 1183.65609 3.2951 0.0019535 1.653 0.00097998 4.9481 0.0029334 592.8362252681723 97.942 0.17165 97.924 97.873 98.045 -0.018188 6 5 2 0 0 0 0.27931 1 54424 54424 14.405 8.1996 1 173140 + 5981 17390 4046 4134 6974 6974 0.07160471080510433 DLGPPSSDQM 10 Unmodified _DLGPPSSDQM_ 0 0 0 REV__ENSG00000162068|ENST00000293973|NTN3 REV__ENSG00000162068|ENST00000293973|NTN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2532348632812 2 523.726589 1045.43863 0.10143 5.3121E-05 -0.55571 -0.00029104 -0.45429 -0.00023792 523.7251959635125 31.746 0.15894 31.746 31.64 31.799 0 11 7 2 0 0 0 0.22811 1 16508 16508 10.074 4.8433 1 659380 + 5982 21623 4047 4135 6975 6975 -0.08227667184405618 DLGQNAEFY 9 Unmodified _DLGQNAEFY_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7322387695312 2 528.735271 1055.45599 NaN NaN NaN NaN NaN NaN NaN 82.816 1 82.816 82.316 83.316 0 0 0 0 0.83049 1 45937 45937 3.9444 0.94915 1 5983 1438 4048 4136 6976 6976 -0.06952003587093714 DLGREPPLP 9 Unmodified _DLGREPPLP_ 0 0 0 REV__ENST00000306875.8_2_16:69362927-69364884:-|nuORF REV__ENST00000306875.8_2_16:69362927-69364884:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2721862792969 2 497.271824 992.529095 -0.12046 -5.9901E-05 -2.651 -0.0013183 -2.7715 -0.0013782 497.2707980809923 35.401 0.19575 35.401 35.265 35.46 0 13 9 2 0 0 0 0.20428 1 18737 18737 22.736 3.4793 1 2912800 + 5984 25383 4049 4137 6977 6977 0.032531699261767244 DLGRHGGAAL 10 Unmodified _DLGRHGGAAL_ 0 0 0 REV__ENSG00000163520|ENST00000404922|FBLN2 REV__ENSG00000163520|ENST00000404922|FBLN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7595520019531 2 483.759415 965.504277 0.25023 0.00012105 -0.67633 -0.00032718 -0.4261 -0.00020613 483.75930609310177 23.692 0.29817 20.864 20.726 21.024 -2.8273 28 18 2 0 0 0 0.32072 1 12816 12816 26.268 5.8145 1 4026100 + 5985 21777 4050 4138 6978 6978 0.020145348434766674 DLGRHGGAAL 10 Unmodified _DLGRHGGAAL_ 0 0 0 REV__ENSG00000163520|ENST00000404922|FBLN2 REV__ENSG00000163520|ENST00000404922|FBLN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 483.759415 965.504277 -0.19591 -9.4774E-05 -0.026245 -1.2696E-05 -0.22216 -0.00010747 483.7595149619905 21.25 0.18533 21.25 21.138 21.323 0 0.19263 0.00020407 NaN 26.268 47 28 2 NaN NaN NaN NaN 0 NaN NaN 0 1282100 + 5986 21777 4050 4138 0.020145348434766674 DLGTEYVHQYV 11 Unmodified _DLGTEYVHQYV_ 0 0 0 GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.3141479492188 2 662.314417 1322.61428 0.20185 0.00013369 0.051315 3.3986E-05 0.25317 0.00016768 662.3144451640853 54.258 0.3153 53.791 53.606 53.921 -0.46664 45 15 4 0 0 0 0.42108 1 29446 29446 20.415 3.3016 1 19425000 5987 15903 4051 4139 6979 6979 -0.03412129398680008 DLGTEYVHQYV 11 Unmodified _DLGTEYVHQYV_ 0 0 0 GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.8165283203125 2 662.314417 1322.61428 0.062375 4.1312E-05 -0.21309 -0.00014113 -0.15071 -9.9819E-05 662.3141706276325 54.709 0.37112 54.242 53.989 54.36 -0.46664 44 18 3 0 0 0 0.5229 1 29574 29574 15.248 3.0078 1 10417000 5988 15903 4051 4139 6980 6980 -0.03412129398680008 DLGTEYVHQYV 11 Unmodified _DLGTEYVHQYV_ 0 0 0 GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.3148803710938 2 662.314417 1322.61428 0.37193 0.00024634 0.47947 0.00031756 0.8514 0.00056389 662.3146125978 55.274 0.43818 54.796 54.567 55.006 -0.47798 49 20 4 0 0 0 0.5229 1 29930 29930 15.248 2.206 1 6872600 5989 15903 4051 4139 6981 6981 -0.03412129398680008 DLGTEYVHQYV 11 Unmodified _DLGTEYVHQYV_ 0 0 0 GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.31494140625 2 662.314417 1322.61428 1.3262 0.00087839 -1.5905 -0.0010534 -0.26421 -0.00017499 662.8140239526989 50.544 0.26432 50.49 50.285 50.55 -0.053871 18 12 2 0 0 0 0.66968 1 27357 27357 7.1017 0 1 1876400 5990 15903 4051 4139 6982 6982 -0.03412129398680008 DLGTEYVHQYV 11 Unmodified _DLGTEYVHQYV_ 0 0 0 GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant GLS|p.R307Q|1|0.18|ENSG00000115419|chr2:190905108-190905108|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3140869140625 2 662.314417 1322.61428 0.66949 0.00044341 -0.48052 -0.00031825 0.18898 0.00012516 662.3139255067285 54.997 0.17709 54.929 54.803 54.98 -0.068737 14 8 2 0 0 0 0.5229 1 29866 29866 15.248 2.206 1 2402500 5991 15903 4051 4139 6983 6983 -0.03412129398680008 DLGTFTSPNFP 11 Unmodified _DLGTFTSPNFP_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2857666015625 2 598.285128 1194.5557 -0.13875 -8.3015E-05 0.75446 0.00045138 0.6157 0.00036837 598.285543630785 43.42 0.19957 43.42 43.262 43.461 0 24 9 3 0 0 0 0.39949 1 23546 23546 21.537 5.6898 1 8900600 5992 2505 4052 4140 6984 6984 -0.03379185973130916 DLGTKTHNL 9 Unmodified _DLGTKTHNL_ 0 0 0 ENSG00000007001|ENST00000005756|UPP2;nc|ENSG00000007001|O95045-2|UPP2 ENSG00000007001|ENST00000005756|UPP2 ENSG00000007001|ENST00000005756|UPP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.2265319824219 2 499.766906 997.519259 0.91379 0.00045668 2.857 0.0014278 3.7707 0.0018845 499.769084161836 66.039 0.58691 59.863 59.643 60.23 -6.1757 72 33 3 0 0 0 0.18521 1 43187 43187 16.942 7.5949 1 29249000 5993 354 4053 4141 6985 6985 0.020399819208023473 DLGWHEHAWFK 11 Unmodified _DLGWHEHAWFK_ 0 0 0 REV__ENSG00000183044|ENST00000268251|ABAT REV__ENSG00000183044|ENST00000268251|ABAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 713.3363037109375 2 713.338561 1424.66257 NaN NaN NaN NaN NaN NaN NaN 57.742 1 57.252 56.752 57.752 -0.48974 0 0 0 0.90364 1 31384 31384 7.1017 1.3699 1 + 5994 23314 4054 4142 6986 6986 -0.03277590968127697 DLHCNTTITGQ 11 Unmodified _DLHCNTTITGQ_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7789306640625 2 601.777145 1201.53974 -0.11739 -7.0646E-05 0.65627 0.00039493 0.53888 0.00032428 601.7780326559964 55.001 0.20465 55.001 54.944 55.149 0 14 8 2 0 0 0 0.66968 1 30565 30565 7.1017 2.2047 1 1341000 5995 5874 4055 4143 6987 6987 -0.05297215481709827 DLHIDQLCI 9 Unmodified _DLHIDQLCI_ 0 0 0 REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.2681274414062 2 535.270967 1068.52738 NaN NaN NaN NaN NaN NaN NaN 81.571 1 75.396 74.896 75.896 -6.1757 0 0 0 0.46757 1 53549 53549 16.942 1.0951 1 + 5996 26817 4056 4144 6988 6988 -0.004142071540854886 DLHKYLEAL 9 Unmodified _DLHKYLEAL_ 0 0 0 REV__nc|ENSG00000076685|P49902-2|NT5C2 REV__nc|ENSG00000076685|P49902-2|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8699951171875 3 367.86948 1100.58661 1.6621 0.00061144 -0.47971 -0.00017647 1.1824 0.00043497 367.86931742706173 50.856 0.34442 45.207 45.071 45.415 -5.649 35 20 2 0 0 0 0.30562 1 32033 32033 11.495 1.9507 1 37801000 + 5997 17594 4057 4145 6989 6989 0.04034012131751297 DLHLEAWPA 9 Unmodified _DLHLEAWPA_ 0 0 0 ENSG00000099721|ENST00000651267|AMELY;nc|ENSG00000099721|Q99218|AMELY ENSG00000099721|ENST00000651267|AMELY ENSG00000099721|ENST00000651267|AMELY MSMS AL20221201_MKP_PDAC_01 4 351.1804809570312 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 72.042 1 65.867 65.367 66.367 -6.1757 0 0 0 0.6557 1 47139 47139 7.1017 0 1 5998 1703 4058 4146 6990 6990 -0.0097911659086094 DLHNLDWWY 9 Unmodified _DLHNLDWWY_ 0 0 0 REV__ENSG00000140006|ENST00000620954|WDR89 REV__ENSG00000140006|ENST00000620954|WDR89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1926574707031 3 421.192734 1260.55637 -0.6376 -0.00026855 -0.56431 -0.00023768 -1.2019 -0.00050624 421.19264379693306 16.299 0.22681 16.299 16.19 16.417 0 192 61 4 0 0 0 0.58466 1 7881 7881 2.9952 1.0889 1 6463200 + 5999 20445 4059 4147 6991 6991 -0.06348346533422955 DLHPISGYL 9 Unmodified _DLHPISGYL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7670288085938 2 507.766374 1013.5182 0.83511 0.00042404 -0.44026 -0.00022355 0.39485 0.00020049 507.76702206802656 52.636 0.14313 46.902 46.817 46.96 -5.7345 12 7 2 0 0 0 0.16226 1 33243 33243 26.884 0.54238 1 27489000 6000 7163 4060 4148 6992 6992 0.01197767551900597 DLHSHRLGF 9 Unmodified _DLHSHRLGF_ 0 0 0 REV__ENST00000266682.9_1_12:85306306-85306633:-|nuORF REV__ENST00000266682.9_1_12:85306306-85306633:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.3060913085938 2 541.280515 1080.54648 0.65745 0.00035587 0.082546 4.4681E-05 0.74 0.00040055 541.2809074728845 90.202 0.090103 84.026 83.951 84.041 -6.1757 6 4 2 0 0 0 0.18118 1 59513 59513 18.135 10.225 1 3546000 + 6001 25105 4061 4149 6993 6993 0.009425102518662243 DLHTLYVVFFF 11 Unmodified _DLHTLYVVFFF_ 0 0 0 REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF REV__ENST00000428210.5_1_2:61705957-61719950:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 700.8667602539062 2 700.866089 1399.71762 0.31792 0.00022282 -1.0942 -0.00076686 -0.77624 -0.00054404 700.8657184070108 93.426 0.23468 92.969 92.812 93.047 -0.4574 15 9 2 0 0 0 0.71036 1 51039 51039 3.2813 0.28607 1 461670 + 6002 26934 4062 4150 6994 6994 0.033754027797840536 DLHTPSDYEF 10 Unmodified _DLHTPSDYEF_ 0 0 0 REV__nc|ENSG00000157168|Q02297-10|NRG1 REV__nc|ENSG00000157168|Q02297-10|NRG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7034606933594 3 408.512021 1222.51423 0.0040775 1.6657E-06 3.4824 0.0014226 3.4865 0.0014243 408.5135985209115 46.848 0.16161 46.848 46.74 46.901 0 12 7 2 0 0 0 0.23227 1 25615 25615 9.544 4.647 1 2955100 + 6003 29724 4063 4151 6995 6995 -0.08812366732468035 DLIEWPIWF 9 Unmodified _DLIEWPIWF_ 0 0 0 ENST00000262160.10_3_18:45352555-45352669:-|nuORF ENST00000262160.10_3_18:45352555-45352669:-|nuORF ENST00000262160.10_3_18:45352555-45352669:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8141479492188 2 609.813325 1217.6121 0.62091 0.00037864 -1.9671 -0.0011996 -1.3462 -0.00082095 609.8120900812215 67.729 0.31602 67.247 67.075 67.391 -0.48218 37 13 4 0 0 0 0.46577 1 37073 37073 9.3474 5.403 1 4206700 6004 11262 4064 4152 6996 6996 0.011994866541726878 DLIIRLSHV 9 Unmodified _DLIIRLSHV_ 0 0 0 REV__ENSG00000102763|ENST00000379310|VWA8 REV__ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8851623535156 3 355.885353 1064.63423 -0.070784 -2.5191E-05 -0.49552 -0.00017635 -0.56631 -0.00020154 356.2196239662232 29.469 0.17417 29.499 29.415 29.589 0.030104 20 8 3 0 0 0 0.098164 1 15362 15362 33.445 6.2217 1 9042800 + 6005 18253 4065 4153 6997 6997 0.10449711122601002 DLILDSIEEI 10 Unmodified _DLILDSIEEI_ 0 0 0 REV__nc|ENSG00000050438|Q2Y0W8-6|SLC4A8 REV__nc|ENSG00000050438|Q2Y0W8-6|SLC4A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.3072509765625 2 580.308269 1158.60199 0.49096 0.00028491 -0.75365 -0.00043735 -0.26269 -0.00015244 580.30756046069 59.689 0.21885 59.689 59.555 59.773 0 12 9 2 0 0 0 0.35903 1 33273 33273 24.021 0 1 1625700 + 6006 17260 4066 4154 6998 6998 0.02902834138308208 DLIPSEEGIVL 11 Unmodified _DLIPSEEGIVL_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8235473632812 2 592.824086 1183.63362 0.19494 0.00011556 -0.35528 -0.00021062 -0.16034 -9.5055E-05 592.8237060335824 75.086 0.32678 75.086 74.948 75.275 0 53 20 3 0 0 0 0.28407 1 41741 41741 27.629 6.0918 1 2152400 6007 3812 4067 4155 6999 6999 0.04914826892240853 DLIVYDWV 8 Unmodified _DLIVYDWV_ 0 0 0 REV__ERCC6L|p.L361Pfs*6|1|0.23|ENSG00000186871|chrX:72207685-72207686|-/G|frameshift_variant REV__ERCC6L|p.L361Pfs*6|1|0.23|ENSG00000186871|chrX:72207685-72207686|-/G|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.27978515625 2 511.7633 1021.51205 0.2176 0.00011136 -2.6344 -0.0013482 -2.4168 -0.0012369 511.76244658253137 63.193 0.34339 62.707 62.542 62.885 -0.48617 25 15 2 0 0 0 8.7369 1 34426 34426 9.3474 0 1 3882400 + 6008 23606 4068 4156 7000 7000 0.002152493203652739 DLKDLFQV 8 Unmodified _DLKDLFQV_ 0 0 0 nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;ENST00000512525.5_1_5:39385512-39390599:-|nuORF;nc|ENSG00000153071|P98082-2|DAB2 nc|ENSG00000153071|P98082-3|DAB2 nc|ENSG00000153071|P98082-3|DAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2699279785156 2 489.26875 976.522947 0.48855 0.00023903 1.938 0.0009482 2.4265 0.0011872 489.26964350605124 52.951 0.25003 52.5 52.381 52.631 -0.45173 20 12 2 0 0 0 0.63229 1 28660 28660 23.148 5.0021 1 2332700 6009 6235 4069 4157 7001 7001 0.03374651694673503 DLKELEAAI 9 Unmodified _DLKELEAAI_ 0 0 0 ENSG00000244005|ENST00000374092|NFS1;nc|ENSG00000244005|Q9Y697-2|NFS1 ENSG00000244005|ENST00000374092|NFS1 ENSG00000244005|ENST00000374092|NFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2790832519531 2 501.279315 1000.54408 0.39544 0.00019823 -1.1337 -0.0005683 -0.73826 -0.00037008 501.27876160245506 77.547 0.31182 77.547 77.4 77.712 0 51 27 2 0 0 0 0.07087 1 43063 43063 39.95 1.9757 1 5656100 6010 10722 4070 4158 7002 7002 0.043826170035117684 DLKKYHFYYWF 11 Unmodified _DLKKYHFYYWF_ 0 0 0 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7 nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.3983154296875 2 805.395544 1608.77654 NaN NaN NaN NaN NaN NaN NaN 97.366 1 97.348 96.848 97.848 -0.018188 0 0 0 0.94301 1 54083 54083 0.35063 0 1 6011 9966 4071 4159 7003 7003 -0.003501209258729432 DLKQLGTL 8 Unmodified _DLKQLGTL_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20221201_MKP_PDAC_01 4 444.2642211914062 2 444.263468 886.512382 NaN NaN NaN NaN NaN NaN NaN 104.65 1 98.478 97.978 98.978 -6.1757 0 0 0 0.97444 1 70071 70071 0.69038 0 1 + 6012 21434 4072 4160 7004 7004 0.06458669040262066 DLKQSFKG 8 Unmodified _DLKQSFKG_ 0 0 0 REV__ENST00000514430.5_1_4:103578843-103578930:-|nuORF REV__ENST00000514430.5_1_4:103578843-103578930:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 461.7534790039062 2 461.753267 921.491981 NaN NaN NaN NaN NaN NaN NaN 47.813 1 42.579 42.079 43.079 -5.2339 0 0 0 0.60022 1 29718 29718 34.102 0 1 + 6013 28194 4073 4161 7005 7005 0.028094983804408002 DLKRPMQAP 9 Unmodified _DLKRPMQAP_ 0 0 0 nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1055.572265625 1 1055.56663 1054.55935 0.0029379 3.1012E-06 0.014712 1.5529E-05 0.01765 1.8631E-05 1056.5678804035422 60.117 0.14291 59.627 59.566 59.708 -0.49079 9 6 2 0 0 0 0.54444 1 32745 32745 4.756 2.4533 1 3051200 6014 694 4074 4162 7006 7006 0.03425205319717861 DLKWNQQQLDD 11 Unmodified _DLKWNQQQLDD_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS;ENST00000529149.1_1_11:126207958-126215505:+|nuORF ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.225341796875 3 468.224762 1401.65246 0.55347 0.00025915 0.24001 0.00011238 0.79348 0.00037153 468.22497101391156 67.023 0.2832 67.041 66.895 67.178 0.018028 37 13 4 0 0 0 0.70435 1 36763 36763 3.8459 0.52627 1 13677000 6015 2698 4075 4163 7007 7007 -0.03230243484017592 DLKWNQQQLDD 11 Unmodified _DLKWNQQQLDD_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS;ENST00000529149.1_1_11:126207958-126215505:+|nuORF ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 468.224762 1401.65246 0.50456 0.00023625 -0.13422 -6.2843E-05 0.37035 0.00017341 468.22435214521056 67.603 0.20402 67.121 66.985 67.189 -0.48218 0.039789 -0.00044205 NaN 3.8459 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 593480 6016 2698 4075 4163 -0.03230243484017592 DLLCRLRCIF 10 Unmodified _DLLCRLRCIF_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MSMS AL20221201_MKP_PDAC_01 4 417.9000549316406 3 417.894866 1250.66277 NaN NaN NaN NaN NaN NaN NaN 22.112 1 19.377 18.877 19.877 -2.7348 0 0 0 0.96627 1 11881 11881 2.086 0 1 + 6017 18514 4076 4164 7008 7008 0.04746369435883935 DLLDIRSEY 9 Unmodified _DLLDIRSEY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.284912109375 2 562.285128 1122.5557 0.60594 0.00034071 -0.63449 -0.00035677 -0.02855 -1.6053E-05 562.2847302949124 60.854 0.42072 60.854 60.625 61.045 0 49 17 4 0 0 0 0.20389 1 33938 33938 29.841 2.2118 1 10238000 6018 3631 4077 4165 7009 7009 -0.0006718597312556085 DLLFTGHGSCQ 11 Unmodified _DLLFTGHGSCQ_ 0 0 0 REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000009694|ENST00000371130|TENM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2677612304688 2 589.268955 1176.52336 0.80691 0.00047549 -3.606 -0.0021249 -2.7991 -0.0016494 589.2662955287585 57.336 0.27872 57.27 57.119 57.397 -0.066032 28 13 3 0 0 0 0.39949 1 31191 31191 21.537 3.3906 1 4201000 + 6019 17034 4078 4166 7010 7010 -0.05784296647766496 DLLILCIDL 9 Unmodified _DLLILCIDL_ 0 0 0 REV__nc|ENSG00000198959|P21980-2|TGM2 REV__nc|ENSG00000198959|P21980-2|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7945556640625 2 515.796286 1029.57802 0.3383 0.00017449 -2.7932 -0.0014407 -2.4549 -0.0012662 515.7944852190035 93.333 0.31898 92.876 92.75 93.069 -0.4574 32 13 3 0 0 0 0.49272 1 51083 51083 7.9102 0.62092 1 480400 + 6020 24108 4079 4167 7011 7011 0.06441322170917374 DLLKVTEMY 9 Unmodified _DLLKVTEMY_ 0 0 0 REV__ENSG00000100749|ENST00000216639|VRK1 REV__ENSG00000100749|ENST00000216639|VRK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2901000976562 2 556.288825 1110.5631 NaN NaN NaN NaN NaN NaN NaN 77.213 1 76.73 76.23 77.23 -0.4826 0 0 0 0.82739 1 42269 42269 4.3292 0 1 + 6021 18106 4080 4168 7012 7012 0.01223830302933493 DLLPRNDEY 9 Unmodified _DLLPRNDEY_ 0 0 0 REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2012939453125 3 378.852377 1133.5353 -0.49416 -0.00018721 3.3036 0.0012516 2.8094 0.0010643 378.8536899983594 25.807 0.14473 25.807 25.717 25.862 0 9 6 2 0 0 0 0.20727 1 13235 13235 2.4985 0.65425 1 567810 + 6022 17501 4081 4169 7013 7013 -0.026123566329715686 DLLQIEVKLNL 11 Unmodified _DLLQIEVKLNL_ 0 0 0 REV__ENSG00000121446|ENST00000294854|RGSL1 REV__ENSG00000121446|ENST00000294854|RGSL1 MSMS AL20221201_MKP_PDAC_01 4 433.2649230957031 3 433.262377 1296.7653 NaN NaN NaN NaN NaN NaN NaN 65.065 1 58.889 58.389 59.389 -6.1757 0 0 0 0.79663 1 42208 42208 12.228 0.59622 1 + 6023 19294 4082 4170 7014 7014 0.12879056980000314 DLLRNRLLI 9 Unmodified _DLLRNRLLI_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8936767578125 3 375.908269 1124.70298 0.49679 0.00018675 -0.10469 -3.9353E-05 0.3921 0.00014739 375.90812513156874 52.822 0.25518 52.759 52.645 52.901 -0.063423 21 12 2 0 0 0 0.20728 1 28615 28615 9.544 1.3884 1 2009000 + 6024 21791 4083 4171 7015 7015 0.14561375422317724 DLLSFPSSAL 10 Unmodified _DLLSFPSSAL_ 0 0 0 ENST00000493195.5_1_1:159897137-159898861:-|nuORF ENST00000493195.5_1_1:159897137-159898861:-|nuORF ENST00000493195.5_1_1:159897137-159898861:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.27490234375 2 525.279315 1048.54408 0.22168 0.00011645 -3.8969 -0.002047 -3.6752 -0.0019305 525.2769978554545 26.171 0.51794 23.22 22.941 23.459 -2.9511 62 30 3 0 0 0 0.1028 1 14237 14237 46.021 8.047 1 43162000 6025 14308 4084 4172 7016 7016 0.02174617003538515 DLLTLRDWT 9 Unmodified _DLLTLRDWT_ 0 0 0 REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2044982910156 3 378.204751 1131.59242 NaN NaN NaN NaN NaN NaN NaN 42.12 1 42.111 41.611 42.611 -0.0088196 0 0 0 0.82283 1 22541 22541 4.897 0.36815 1 + 6026 28044 4085 4173 7017 7017 0.031891106434159155 DLLTWEEPTFD 11 Unmodified _DLLTWEEPTFD_ 0 0 0 REV__ENSG00000174652|ENST00000592904|ZNF266 REV__ENSG00000174652|ENST00000592904|ZNF266 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3095092773438 2 683.314083 1364.61361 -0.058598 -4.0041E-05 -2.1653 -0.0014796 -2.2239 -0.0015196 683.3116615048514 62.517 0.66403 62.517 62.432 63.096 0 43 30 2 0 0 0 0.71341 1 34845 34845 2.9952 0.26005 1 1775800 + 6027 22806 4086 4174 7018 7018 -0.054109688383732646 DLLWDDLF 8 Unmodified _DLLWDDLF_ 0 0 0 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7513427734375 2 518.752933 1035.49131 NaN NaN NaN NaN NaN NaN NaN 48.108 1 48.108 47.608 48.608 0 0 0 0 0.85111 1 26374 26374 20.871 2.7362 1 6028 8391 4087 4175 7019 7019 -0.025013410592919172 DLLYLRGNN 9 Unmodified _DLLYLRGNN_ 0 0 0 REV__ENST00000358935.2_1_10:94100478-94109119:+|nuORF REV__ENST00000358935.2_1_10:94100478-94109119:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8136596679688 2 539.288005 1076.56146 0.27823 0.00015005 2.5382 0.0013688 2.8164 0.0015188 539.2902018094176 61.61 0.23468 61.577 61.476 61.711 -0.032787 17 11 2 0 0 0 0.209 1 33636 33636 7.2892 0 1 2453400 + 6029 25882 4088 4176 7020 7020 0.026239573292059504 DLMSHRWY 8 Unmodified _DLMSHRWY_ 0 0 0 REV__ENST00000549713.1_1_12:105198932-105227907:-|nuORF REV__ENST00000549713.1_1_12:105198932-105227907:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2551879882812 2 554.255651 1106.49675 0.82285 0.00045607 -0.74502 -0.00041293 0.077827 4.3136E-05 554.2551949907463 91.187 0.54893 85.012 84.703 85.252 -6.1757 48 31 2 0 0 0 0.58902 1 60233 60233 26.884 2.8631 1 13996000 + 6030 28698 4089 4177 7021 7021 -0.05223940748464884 DLNPPLCKEF 10 Unmodified _DLNPPLCKEF_ 0 0 0 REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF REV__ENST00000493756.1_1_1:40997452-41013129:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 588.7656860351562 2 588.291899 1174.56925 0.31009 0.00018242 1.2578 0.00073996 1.5679 0.00092238 588.2928452768176 65.776 0.64841 59.6 59.304 59.952 -6.1757 53 37 3 0 0 0 0.22489 1 42906 42906 8.7454 0 1 26996000 + 6031 19080 4090 4178 7022 7022 -0.011056514655820138 DLNVVEHKVF 10 Unmodified _DLNVVEHKVF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7980346679688 2 600.324588 1198.63462 0.083825 5.0322E-05 1.153 0.00069215 1.2368 0.00074247 600.3254079692915 37.086 0.18242 37.086 36.997 37.18 0 13 8 2 0 0 0 0.23279 1 19750 19750 9.3831 5.7866 1 744530 6032 9805 4091 4179 7023 7023 0.043250860517900946 DLPAWAVG 8 Unmodified _DLPAWAVG_ 0 0 0 REV__ENSG00000100473|ENST00000396618|COCH REV__ENSG00000100473|ENST00000396618|COCH MSMS AL20221201_MKP_PDAC_01 4 414.7172546386719 2 414.716153 827.417754 NaN NaN NaN NaN NaN NaN NaN 41.703 1 37.095 36.595 37.595 -4.6079 0 0 0 0.88073 1 25083 25083 19.439 5.9311 1 + 6033 18072 4092 4180 7024 7024 -0.002858447110952511 DLPEFRYRSCL 11 Unmodified _DLPEFRYRSCL_ 0 0 0 nc|ENSG00000100271|O95922-2|TTLL1 nc|ENSG00000100271|O95922-2|TTLL1 nc|ENSG00000100271|O95922-2|TTLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.8494262695312 2 699.845361 1397.67617 0.61724 0.00043197 3.1676 0.0022168 3.7848 0.0026488 699.8468585677148 54.677 0.46003 54.677 54.352 54.812 0 37 19 3 0 0 0 0.61059 1 30338 30338 10.8 2.0541 1 3419300 6034 16083 4093 4181 7025 7025 -0.006761012511560693 DLPIPDCLLI 10 Unmodified _DLPIPDCLLI_ 0 0 0 REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3070068359375 2 556.307018 1110.59948 0.81078 0.00045104 0.68618 0.00038173 1.497 0.00083277 556.3074927196026 68.131 0.44675 67.649 67.453 67.899 -0.48219 66 20 4 0 0 0 0.2178 1 37169 37169 32.305 1.6689 1 36189000 + 6035 17420 4094 4182 7026 7026 0.048607071996229934 DLPIPDCLLI 10 Unmodified _DLPIPDCLLI_ 0 0 0 REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF REV__ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.307018 1110.59948 0.61603 0.0003427 0.40499 0.0002253 1.021 0.000568 556.3072388149691 67.715 0.29186 67.715 67.604 67.896 0 0.037653 -0.00047071 NaN 32.305 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1811400 + 6036 17420 4094 4182 0.048607071996229934 DLPLGREQHCK 11 Unmodified _DLPLGREQHCK_ 0 0 0 ENSG00000154655|ENST00000317931|L3MBTL4;nc|ENSG00000154655|Q8NA19|L3MBTL4 ENSG00000154655|ENST00000317931|L3MBTL4 ENSG00000154655|ENST00000317931|L3MBTL4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.7293395996094 3 432.555678 1294.6452 0.96065 0.00041554 -1.0349 -0.00044763 -0.0742 -3.2096E-05 432.5563615246121 91.408 0.55087 85.232 84.939 85.49 -6.1757 40 30 2 0 0 0 0.28503 1 60415 60415 9.7643 0 1 10576000 6037 6342 4095 4183 7027 7027 0.009667454345844817 DLPMKRQPA 9 Unmodified _DLPMKRQPA_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1056.566284179688 1 1055.56663 1054.55935 0.39261 0.00041442 0.012682 1.3386E-05 0.40529 0.00042781 1055.567049055469 45.296 0.11351 45.268 45.169 45.283 -0.028015 8 5 2 0 0 0 0.58466 1 24322 24322 2.3027 0 1 14593000 + 6038 22382 4096 4184 7028 7028 0.034252053197405985 DLPNFPFFKEI 11 Unmodified _DLPNFPFFKEI_ 0 0 0 REV__ENST00000519287.1_1_5:159849240-159855685:+|nuORF REV__ENST00000519287.1_1_5:159849240-159855685:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8532104492188 2 683.855721 1365.69689 NaN NaN NaN NaN NaN NaN NaN 59.364 1 59.364 58.864 59.864 0 0 0 0 0.9372 1 33072 33072 4.5289 1.2476 1 + 6039 21931 4097 4185 7029 7029 0.028668124001569595 DLPQELIII 9 Unmodified _DLPQELIII_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.312255859375 2 527.313158 1052.61176 1.2761 0.00067291 -0.059936 -3.1605E-05 1.2162 0.00064131 527.3121698110098 101.12 0.085381 94.943 94.889 94.974 -6.1757 10 4 3 0 0 0 0.037253 1 67797 67797 65.235 0.9987 1 23801000 + 6040 22004 4098 4186 7030 7030 0.08756066934347473 DLPQTEFMWCK 11 Unmodified _DLPQTEFMWCK_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.3154907226562 2 699.315048 1396.61554 0.45129 0.00031559 0.46469 0.00032496 0.91598 0.00064056 699.3154730083651 51.987 0.15035 51.928 51.854 52.005 -0.058918 10 6 2 0 0 0 0.7326 1 28175 28175 1.1933 0 1 1351700 + 6041 21725 4099 4187 7031 7031 -0.06689954625744576 DLPVCQGHVCK 11 Unmodified _DLPVCQGHVCK_ 0 0 0 REV__ENSG00000187122|ENST00000266058|SLIT1 REV__ENSG00000187122|ENST00000266058|SLIT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.2887573242188 2 599.789001 1197.56345 0.33601 0.00020153 -2.3157 -0.0013889 -1.9796 -0.0011874 599.7883452672106 79.047 0.13155 72.872 72.762 72.894 -6.1757 9 6 2 0 0 0 0.27103 1 51710 51710 13.615 0 1 6634900 + 6042 23623 4100 4188 7032 7032 -0.02743073248871042 DLPWRRQLY 9 Unmodified _DLPWRRQLY_ 0 0 0 DPP6|p.R510W|1|0.19|ENSG00000130226|chr7:154804945-154804945|C/T|missense_variant DPP6|p.R510W|1|0.19|ENSG00000130226|chr7:154804945-154804945|C/T|missense_variant DPP6|p.R510W|1|0.19|ENSG00000130226|chr7:154804945-154804945|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 416.229248046875 3 416.22789 1245.66184 NaN NaN NaN NaN NaN NaN NaN 34.627 1 30.532 30.032 31.032 -4.0951 0 0 0 0.67641 1 19989 19989 10.151 7.0166 1 6043 241 4101 4189 7033 7033 0.04883614382856649 DLQKFSEKL 9 Unmodified _DLQKFSEKL_ 0 0 0 REV__nc|ENSG00000160293|P52735-3|VAV2 REV__nc|ENSG00000160293|P52735-3|VAV2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.5416564941406 3 369.873001 1106.59717 0.91864 0.00033978 1.052 0.00038912 1.9707 0.0007289 369.8736130584925 22.718 0.35764 19.94 19.828 20.186 -2.7784 36 26 2 0 0 0 0.19891 1 12331 12331 7.609 2.893 1 4630500 + 6044 21531 4102 4190 7034 7034 0.04813994786195508 DLQLWTHR 8 Unmodified _DLQLWTHR_ 0 0 0 ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73489877-73495164:+|nuORF ENSG00000177728|ENST00000314256|TMEM94 ENSG00000177728|ENST00000314256|TMEM94 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1068.556884765625 1 1068.5585 1067.55123 -0.42507 -0.00045422 0.075339 8.0504E-05 -0.34973 -0.00037371 1068.5576783506187 87.499 0.28188 87.499 87.358 87.64 0 19 12 2 0 0 0 0.79887 1 48443 48443 7.2892 0.56607 1 593220 6045 8705 4103 4191 7035 7035 0.02015394394584291 DLQMPLGKL 9 Unmodified _DLQMPLGKL_ 0 0 0 ENST00000413631.1_1_13:111590971-111591304:+|nuORF ENST00000413631.1_1_13:111590971-111591304:+|nuORF ENST00000413631.1_1_13:111590971-111591304:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2869262695312 2 507.786253 1013.55795 0.33788 0.00017157 -2.0646 -0.0010484 -1.7267 -0.00087682 508.2875504873767 38.525 0.29327 34.156 33.98 34.273 -4.3689 24 18 2 0 0 0 0.32871 1 22785 22785 15.847 3.3156 1 20786000 6046 13000 4104 4192 7036 7036 0.05171571230982863 DLQPKRDHV 9 Unmodified _DLQPKRDHV_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8691101074219 3 369.868362 1106.58326 -0.028507 -1.0544E-05 2.0648 0.00076372 2.0363 0.00075317 369.86940163048564 60.441 0.10241 59.95 59.886 59.988 -0.49079 6 4 2 0 0 0 0.49272 1 32926 32926 4.897 0 1 993700 6047 5265 4105 4193 7037 7037 0.0342276207775285 DLQSPPAPVSF 11 Unmodified _DLQSPPAPVSF_ 0 0 0 REV__PPP1R1B|p.R32Sfs*43|1|0.18|ENSG00000131771|chr17:39629183-39629198|GACCAACGCCTGCCAT/-|frameshift_variant REV__PPP1R1B|p.R32Sfs*43|1|0.18|ENSG00000131771|chr17:39629183-39629198|GACCAACGCCTGCCAT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2975463867188 2 579.295496 1156.57644 2.7133 0.0015718 1.6519 0.00095692 4.3651 0.0025287 579.2963725563028 96.617 0.41066 96.61 96.388 96.799 -0.007019 33 14 3 0 0 0 0.35681 1 53628 53628 23.79 3.3362 1 8032400 + 6048 19810 4106 4194 7038 7038 0.004414044065242706 DLRASERFLHF 11 Unmodified _DLRASERFLHF_ 0 0 0 ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT ENSG00000115850|ENST00000264162|LCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2456970214844 3 464.245721 1389.71533 0.1261 5.8542E-05 -0.39109 -0.00018156 -0.26499 -0.00012302 464.24560788849305 34.671 0.25745 34.699 34.561 34.818 0.027405 35 11 4 0 0 0 0.71728 1 18282 18282 2.6312 0 1 16668000 6049 3170 4107 4195 7039 7039 0.03606367094698726 DLREERVSF 9 Unmodified _DLREERVSF_ 0 0 0 ENSG00000176715|ENST00000614302|ACSF3 ENSG00000176715|ENST00000614302|ACSF3 ENSG00000176715|ENST00000614302|ACSF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1997680664062 3 384.199889 1149.57784 0.055583 2.1355E-05 0.21967 8.4396E-05 0.27525 0.00010575 384.20006431758 39.704 0.32022 39.704 39.553 39.873 0 33 15 3 0 0 0 0.056071 1 21284 21284 43.477 24.115 1 5396500 6050 8617 4108 4196 7040 7040 0.009030384952893655 DLREQLEEL 9 Unmodified _DLREQLEEL_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1995239257812 3 382.199666 1143.57717 1.4024 0.00053598 -2.7568 -0.0010536 -1.3544 -0.00051767 382.19861698496914 35.632 0.21687 31.439 31.367 31.584 -4.1928 23 13 2 0 0 0 0.43463 1 20717 20717 7.1017 2.3858 1 6317200 + 6051 22699 4109 4197 7041 7041 0.011121990555693628 DLRILLIILLN 11 Unmodified _DLRILLIILLN_ 0 0 0 REV__ENSG00000239590|ENST00000340750|OR1J4 REV__ENSG00000239590|ENST00000340750|OR1J4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1308.972900390625 1 1308.86133 1307.85406 1.8469 0.0024174 3.269 0.0042787 5.1159 0.006696 1308.8684672361085 82.229 0.29981 82.291 82.175 82.474 0.062004 13 11 2 0 0 0 0.73115 1 45564 45564 1.3295 0 1 13963000 + 6052 24440 4110 4198 7042 7042 0.21244517010359232 DLRKEDVAM 9 Oxidation (M) _DLRKEDVAM(Oxidation (M))_ DLRKEDVAM(1) DLRKEDVAM(44) 0 0 1 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4;nc|ENSG00000129071|O95243-3|MBD4;ENST00000505883.1_1_3:129156140-129158676:-|nuORF;ENST00000509587.1_1_3:129152915-129158676:-|nuORF nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.77099609375 2 546.771331 1091.52811 0.84333 0.00046111 -0.33944 -0.0001856 0.50389 0.00027551 546.7711137124162 19.182 0.28742 16.525 16.373 16.66 -2.6564 32 19 2 0 0 0 0.05483 1 10099 10099 43.772 17.504 1 11193000 6053 4112 4111 4199 7043 7043 731 -0.013994125050430739 DLRKEDVAM 9 Unmodified _DLRKEDVAM_ 0 0 0 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4;nc|ENSG00000129071|O95243-3|MBD4;ENST00000505883.1_1_3:129156140-129158676:-|nuORF;ENST00000509587.1_1_3:129152915-129158676:-|nuORF nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.276123046875 2 538.773874 1075.53319 0.93089 0.00050154 3.1598 0.0017024 4.0907 0.002204 539.2772493385654 30.772 0.27787 27.275 27.113 27.391 -3.497 30 12 4 0 0 0 0.16019 1 17382 17382 34.932 13.185 1 43246000 6054 4112 4111 4200 7044 7044 -0.0015510864241150557 DLRKEDVAM 9 Unmodified _DLRKEDVAM_ 0 0 0 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4;nc|ENSG00000129071|O95243-3|MBD4;ENST00000505883.1_1_3:129156140-129158676:-|nuORF;ENST00000509587.1_1_3:129152915-129158676:-|nuORF nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.518798828125 3 359.518341 1075.53319 1.7181 0.00061768 -0.088376 -3.1773E-05 1.6297 0.00058591 359.5181585611804 30.797 0.15559 27.3 27.211 27.366 -3.497 11 6 2 0 0 0 0.073961 1 17397 17397 39.213 19.851 1 36584000 6055 4112 4111 4200 7045 7045 -0.0015510864241150557 DLRQELLAF 9 Unmodified _DLRQELLAF_ 0 0 0 nc|ENSG00000143393|Q9UBF8-2|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8069458007812 2 552.806031 1103.59751 0.63909 0.00035329 -0.65267 -0.0003608 -0.013585 -7.5101E-06 552.805948483419 85.049 0.31821 84.548 84.342 84.661 -0.5015 31 15 3 0 0 0 0.40615 1 46487 46487 17.113 1.8644 1 1972700 6056 16244 4112 4201 7046 7046 0.04985414506040797 DLRRFGGL 8 Unmodified _DLRRFGGL_ 0 0 0 ENST00000466398.5_1_2:180409590-180440874:-|nuORF ENST00000466398.5_1_2:180409590-180440874:-|nuORF ENST00000466398.5_1_2:180409590-180440874:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2676086425781 2 467.266876 932.519199 -0.6108 -0.00028541 -0.10104 -4.7213E-05 -0.71184 -0.00033262 467.26690352589947 18.931 0.12017 18.954 18.888 19.008 0.023106 11 7 2 0 0 0 0.74163 1 9520 9520 13.508 4.1604 1 826720 6057 13755 4113 4202 7047 7047 0.05024026711487295 DLRWRFWWEYV 11 Unmodified _DLRWRFWWEYV_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.4070434570312 2 828.409518 1654.80448 NaN NaN NaN NaN NaN NaN NaN 23.906 1 23.906 23.406 24.406 0 0 0 0 0.94301 1 12199 12199 0.35063 0.35063 1 + 6058 19597 4114 4203 7048 7048 0.003272020542226528 DLRYQWML 8 Unmodified _DLRYQWML_ 0 0 0 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7817993164062 2 562.781502 1123.54845 0.72977 0.0004107 -0.84964 -0.00047816 -0.11987 -6.7462E-05 562.7814078068328 64.611 0.32417 64.126 63.949 64.273 -0.48512 35 14 3 0 0 0 0.70294 1 35236 35236 16.942 1.0951 1 4554000 6059 8593 4115 4204 7049 7049 -0.008381970545542572 DLSEWPRTF 9 Unmodified _DLSEWPRTF_ 0 0 0 REV__ENST00000515433.1_1_5:135382017-135382110:+|nuORF REV__ENST00000515433.1_1_5:135382017-135382110:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.3111572265625 2 575.780013 1149.54547 1.1421 0.00065759 1.5128 0.00087107 2.6549 0.0015287 575.7810559903086 71.788 0.31873 65.612 65.462 65.781 -6.1757 32 17 3 0 0 0 0.18118 1 46835 46835 18.135 2.2878 1 40577000 + 6060 28216 4116 4205 7050 7050 -0.023317489077271603 DLSGSSFYD 9 Unmodified _DLSGSSFYD_ 0 0 0 REV__ENST00000395850.7_1_11:33731319-33731376:-|nuORF REV__ENST00000395850.7_1_11:33731319-33731376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.4083862304688 1 990.405083 989.397806 0.073419 7.2715E-05 3.6356 0.0036007 3.709 0.0036734 990.4094598353017 61.393 0.26199 61.393 61.235 61.497 0 15 11 2 0 0 0 0.30562 1 34212 34212 16.942 5.302 1 549350 + 6061 26489 4117 4206 7051 7051 -0.09731685232372911 DLSGVVYLA 9 Unmodified _DLSGVVYLA_ 0 0 0 REV__nc|ENSG00000160305|Q14689-6|DIP2A REV__nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7562255859375 2 468.755475 935.496398 0.63189 0.0002962 0.31676 0.00014848 0.94865 0.00044468 468.75555767179344 67.008 0.34771 67.008 66.878 67.226 0 31 15 3 0 0 0 0.2001 1 37361 37361 23.148 5.0134 1 2518500 + 6062 21535 4118 4207 7052 7052 0.02606962803326951 DLSGVVYLA 9 Unmodified _DLSGVVYLA_ 0 0 0 REV__nc|ENSG00000160305|Q14689-6|DIP2A REV__nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.5043334960938 1 936.503674 935.496398 0.38857 0.0003639 0.30291 0.00028368 0.69148 0.00064757 936.5041577109779 67.068 0.27904 67.068 66.896 67.175 0 26 12 3 0 0 0 0.052168 1 37372 37372 44.407 8.3628 1 2536900 + 6063 21535 4118 4207 7053 7053 0.02606962803326951 DLSGVVYLA 9 Unmodified _DLSGVVYLA_ 0 0 0 REV__nc|ENSG00000160305|Q14689-6|DIP2A REV__nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 936.503674 935.496398 0.38857 0.0003639 0.30291 0.00028368 0.69148 0.00064757 936.5041577109779 67.068 0.27904 67.068 66.896 67.175 0 0 0 NaN 44.407 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2536900 + 6064 21535 4118 4207 0.02606962803326951 DLSGVVYLA 9 Unmodified _DLSGVVYLA_ 0 0 0 REV__nc|ENSG00000160305|Q14689-6|DIP2A REV__nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 468.755475 935.496398 0.63189 0.0002962 0.31676 0.00014848 0.94865 0.00044468 468.75555767179344 67.008 0.34771 67.008 66.878 67.226 0 0 0 NaN 23.148 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2518500 + 6065 21535 4118 4207 0.02606962803326951 DLSLADLYL 9 Unmodified _DLSLADLYL_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1022.53955078125 1 1022.54045 1021.53318 -0.27399 -0.00028017 1.098 0.0011227 0.82398 0.00084255 1022.5415062056826 77.638 0.28332 77.638 77.511 77.794 0 29 18 3 0 0 0 0.023164 1 43142 43142 60.39 2.9182 1 1690100 + 6066 22318 4119 4208 7054 7054 0.02327214629235641 DLSLADLYL 9 Unmodified _DLSLADLYL_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1022.178649902344 1 1022.54045 1021.53318 -0.73735 -0.00075397 2.9336 0.0029997 2.1962 0.0022458 1022.5428996865145 78.137 0.16035 77.655 77.575 77.735 -0.4826 9 6 2 0 0 0 0.14602 1 42789 42789 28.487 6.7402 1 909570 + 6067 22318 4119 4208 7055 7055 0.02327214629235641 DLSLADLYL 9 Unmodified _DLSLADLYL_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1022.54045 1021.53318 -0.27399 -0.00028017 1.098 0.0011227 0.82398 0.00084255 1022.5415062056826 77.638 0.28332 77.638 77.511 77.794 0 -0.0085119 -0.00061064 NaN 60.39 29 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1690100 + 6068 22318 4119 4208 0.02327214629235641 DLSLADLYL 9 Unmodified _DLSLADLYL_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1022.54045 1021.53318 -0.73735 -0.00075397 2.9336 0.0029997 2.1962 0.0022458 1022.5428996865145 78.137 0.16035 77.655 77.575 77.735 -0.4826 0.0085119 0.0012664 NaN 60.39 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 909570 + 6069 22318 4119 4208 0.02327214629235641 DLSLARAREVA 11 Unmodified _DLSLARAREVA_ 0 0 0 REV__nc|ENSG00000126217|O15068-8|MCF2L REV__nc|ENSG00000126217|O15068-8|MCF2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2279052734375 3 400.894688 1199.66223 1.2393 0.00049683 -1.142 -0.00045782 0.097294 3.9005E-05 400.8947150248464 20.27 0.47042 17.577 17.35 17.82 -2.693 104 30 5 0 0 0 0.44182 1 10697 10697 15.538 3.9071 1 38698000 + 6070 29620 4120 4209 7056 7056 0.07038989312036392 DLSLDLFPDF 10 Unmodified _DLSLDLFPDF_ 0 0 0 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 REV__nc|ENSG00000140455|Q9Y6I4-2|USP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2337036132812 2 591.289879 1180.56521 NaN NaN NaN NaN NaN NaN NaN 73.926 1 73.45 72.95 73.95 -0.47588 0 0 0 0.97302 1 40461 40461 3.5965 0 1 + 6071 20472 4121 4210 7057 7057 -0.017854176876198835 DLSLECREFH 10 Unmodified _DLSLECREFH_ 0 0 0 ENST00000428046.7_1_15:43622876-43623026:+|nuORF ENST00000428046.7_1_15:43622876-43623026:+|nuORF ENST00000428046.7_1_15:43622876-43623026:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.787109375 2 624.787512 1247.56047 -0.075845 -4.7387E-05 -0.94076 -0.00058777 -1.0166 -0.00063516 624.7871047381583 38.266 0.18417 37.985 37.915 38.099 -0.28051 12 7 2 0 0 0 0.63399 1 20167 20167 9.3831 1.2276 1 770510 6072 13205 4122 4211 7058 7058 -0.053406251020078344 DLSRFRGFLE 10 Unmodified _DLSRFRGFLE_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 619.8277587890625 2 620.327662 1238.64077 -0.1238 -7.6797E-05 0.83862 0.00052022 0.71482 0.00044342 620.3289649653087 85.076 0.086166 78.9 78.837 78.924 -6.1757 6 4 2 0 0 0 0.22941 1 56005 56005 13.906 0 1 7870600 6073 5680 4123 4212 7059 7059 0.030996042833521642 DLSRGHAV 8 Unmodified _DLSRGHAV_ 0 0 0 nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL nc|ENSG00000005844|P20701-3|ITGAL nc|ENSG00000005844|P20701-3|ITGAL MSMS AL20221201_MKP_PDAC_01 4 427.7268676757812 2 427.727584 853.440614 NaN NaN NaN NaN NaN NaN NaN 25.877 1 22.926 22.426 23.426 -2.9511 0 0 0 0.69365 1 14202 14202 28.487 0 1 6074 317 4124 4213 7060 7060 0.008031744063828228 DLSRGHAV 8 Unmodified _DLSRGHAV_ 0 0 0 nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL nc|ENSG00000005844|P20701-3|ITGAL nc|ENSG00000005844|P20701-3|ITGAL MSMS AL20221201_MKP_PDAC_01 4 427.7284851074219 2 427.727584 853.440614 NaN NaN NaN NaN NaN NaN NaN 26.062 1 23.111 22.611 23.611 -2.9511 0 0 0 0.83301 1 14321 14321 21.747 0 1 6075 317 4124 4213 7061 7061 0.008031744063828228 DLTDLAVAI 9 Unmodified _DLTDLAVAI_ 0 0 0 REV__ENST00000481851.1_1_1:201465194-201465431:-|nuORF REV__ENST00000481851.1_1_1:201465194-201465431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.515869140625 1 930.514239 929.506963 0.60226 0.00056041 0.71404 0.00066442 1.3163 0.0012248 930.514886149327 82.135 0.35201 81.639 81.415 81.767 -0.4952 24 13 2 0 0 0 0.095405 1 45018 45018 34.102 5.6156 1 2190900 + 6076 27706 4125 4214 7062 7062 0.039389454577644756 DLTDSFGW 8 Unmodified _DLTDSFGW_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.4046630859375 1 940.404689 939.397412 -0.1477 -0.0001389 -1.7809 -0.0016748 -1.9286 -0.0018137 940.4029692863886 70.163 0.087975 70.163 70.139 70.227 0 6 4 2 0 0 0 0.78849 1 39126 39126 9.3474 2.0582 1 553430 6077 1425 4126 4215 7063 7063 -0.07471060161560672 DLTSIPKQF 9 Unmodified _DLTSIPKQF_ 0 0 0 REV__nc|ENSG00000086061|P31689-2|DNAJA1 REV__nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7874755859375 2 524.787307 1047.56006 0.26717 0.00014021 -0.19836 -0.0001041 0.068809 3.611E-05 524.7871883001794 53.201 0.40942 52.749 52.554 52.963 -0.45173 88 20 6 0 0 0 0.14594 1 28726 28726 18.146 0 1 178690000 + 6078 17763 4127 4216 7064 7064 0.038183232404207956 DLTSSDNTMPD 11 Unmodified _DLTSSDNTMPD_ 0 0 0 REV__ENSG00000198785|ENST00000361820|GRIN3A REV__ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2454833984375 2 598.2428 1194.47105 0.16313 9.759E-05 1.2534 0.00074982 1.4165 0.00084741 598.2451325745366 52.85 0.6104 52.85 52.489 53.099 0 49 28 3 0 0 0 0.56638 1 29290 29290 13.042 2.2185 1 4222400 + 6079 24056 4128 4217 7065 7065 -0.1184092457206134 DLTYRILRF 9 Unmodified _DLTYRILRF_ 0 0 0 ENSG00000099953|ENST00000215743|MMP11 ENSG00000099953|ENST00000215743|MMP11 ENSG00000099953|ENST00000215743|MMP11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.3649291992188 2 598.842948 1195.67134 0.1539 9.2161E-05 1.845 0.0011049 1.9989 0.001197 598.8435299875833 93.674 0.25766 87.498 87.364 87.622 -6.1757 22 14 2 0 0 0 0.19613 1 62105 62105 12.532 0.89125 1 11382000 6080 1725 4129 4218 7066 7066 0.08133382668370359 DLVCVNAW 8 Unmodified _DLVCVNAW_ 0 0 0 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.22119140625 2 460.220746 918.426938 0.45433 0.00020909 -0.02864 -1.3181E-05 0.42569 0.00019591 460.2206392566277 72.209 0.24179 71.733 71.572 71.813 -0.47609 16 10 2 0 0 0 0.80143 1 39518 39518 5.7604 0 1 926790 6081 5784 4130 4219 7067 7067 -0.03553819417084014 DLVCVNAW 8 Unmodified _DLVCVNAW_ 0 0 0 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2211303710938 2 460.220746 918.426938 0.48336 0.00022245 -0.00036586 -1.6838E-07 0.483 0.00022228 460.22065863801396 72.438 0.26811 71.962 71.834 72.102 -0.47609 17 12 2 0 0 0 0.72953 1 39650 39650 14.582 0 1 687280 6082 5784 4130 4219 7068 7068 -0.03553819417084014 DLVDFEDNYQF 11 Unmodified _DLVDFEDNYQF_ 0 0 0 nc|ENSG00000160339|Q15485-2|FCN2;ENSG00000160339|ENST00000291744|FCN2 nc|ENSG00000160339|Q15485-2|FCN2 nc|ENSG00000160339|Q15485-2|FCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.904052734375 4 351.904308 1403.58813 -0.4492 -0.00015808 -0.10233 -3.6011E-05 -0.55154 -0.00019409 351.9042862486757 33.467 0.7174 33.467 33.327 34.044 0 151 50 4 0 0 0 0.71938 1 17522 17522 2.4348 0 1 96506000 6083 6721 4131 4220 7069 7069 -0.09752443360821417 DLVDQLMF 8 Unmodified _DLVDQLMF_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7405090332031 2 490.741511 979.468469 0.18793 9.2223E-05 0.29684 0.00014567 0.48476 0.00023789 490.74139261125384 77.128 0.1571 77.128 77.085 77.242 0 10 6 2 0 0 0 0.80722 1 42901 42901 2.3027 0 1 228550 + 6084 18939 4132 4221 7070 7070 -0.02208683448395732 DLVDQLMF 8 Unmodified _DLVDQLMF_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 490.741511 979.468469 0.18793 9.2223E-05 0.29684 0.00014567 0.48476 0.00023789 490.74139261125384 77.128 0.1571 77.128 77.085 77.242 0 0 0 NaN 2.3027 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 228550 + 6085 18939 4132 4221 -0.02208683448395732 DLVEKPHKF 9 Unmodified _DLVEKPHKF_ 0 0 0 REV__nc|ENSG00000171931|Q5XX13-4|FBXW10;REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3060302734375 2 556.808574 1111.60259 0.92323 0.00051406 0.14563 8.109E-05 1.0689 0.00059515 556.8086834394467 80.555 2.5373 74.379 73.642 76.179 -6.1757 287 135 3 0 0 0 0.29507 3 53758 52466;53758;53890 24.021 6.9077 1 96955000 + 6086 24447;22611 4133 4222 7071;7072;7073 7072 0.051257183686630015 DLVKIALTL 9 Unmodified _DLVKIALTL_ 0 0 0 REV__ENSG00000150275|ENST00000644397|PCDH15 REV__ENSG00000150275|ENST00000644397|PCDH15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3185424804688 2 493.318243 984.621933 0.77901 0.0003843 -0.61544 -0.00030361 0.16358 8.0695E-05 493.3179613092477 75.742 0.24564 75.265 75.126 75.372 -0.47714 20 10 2 0 0 0 0.13231 1 41446 41446 29.841 0.759 1 1624400 + 6087 21021 4134 4223 7074 7074 0.12900674659545075 DLVKIALTL 9 Unmodified _DLVKIALTL_ 0 0 0 REV__ENSG00000150275|ENST00000644397|PCDH15 REV__ENSG00000150275|ENST00000644397|PCDH15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3182067871094 2 493.318243 984.621933 1.3189 0.00065064 -1.4444 -0.00071253 -0.12546 -6.1891E-05 493.31777365609037 97.709 0.12043 91.533 91.493 91.614 -6.1757 13 8 2 0 0 0 0.017075 1 64756 64756 66.457 0 1 15210000 + 6088 21021 4134 4223 7075 7075 0.12900674659545075 DLVLEPAP 8 Unmodified _DLVLEPAP_ 0 0 0 ENSG00000184814|ENST00000329447|PRR23B ENSG00000184814|ENST00000329447|PRR23B ENSG00000184814|ENST00000329447|PRR23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4664916992188 1 853.466561 852.459284 0.045912 3.9184E-05 0.12805 0.00010929 0.17396 0.00014847 853.4665298199778 80.023 0.47746 80.023 79.797 80.275 0 62 24 3 0 0 0 0.18881 1 44459 44459 74.396 14.007 1 9222800 6089 9291 4135 4224 7076 7076 0.02715291257561603 DLVLEPAP 8 Unmodified _DLVLEPAP_ 0 0 0 ENSG00000184814|ENST00000329447|PRR23B ENSG00000184814|ENST00000329447|PRR23B ENSG00000184814|ENST00000329447|PRR23B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 853.466561 852.459284 0.33368 0.00028479 1.0106 0.00086251 1.3443 0.0011473 853.4672977046442 80.621 0.32204 80.128 79.929 80.251 -0.49248 0.05258 0.00061542 NaN 74.396 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 835060 6090 9291 4135 4224 0.02715291257561603 DLVLIIAASF 10 Unmodified _DLVLIIAASF_ 0 0 0 ENSG00000147606|ENST00000276609|SLC26A7;nc|ENSG00000147606|Q8TE54-2|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3172607421875 2 531.3157 1060.61685 NaN NaN NaN NaN NaN NaN NaN 84.514 1 84.577 84.077 85.077 0.063171 0 0 0 0.94014 1 46767 46767 6.2058 0.47393 1 6091 5869 4136 4225 7077 7077 0.08896370796924202 DLVNPVPV 8 Unmodified _DLVNPVPV_ 0 0 0 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4846801757812 1 852.482545 851.475269 0.03876 3.3042E-05 -0.61859 -0.00052734 -0.57983 -0.0004943 852.4818853525752 76.971 0.55704 76.971 76.708 77.265 0 102 33 4 0 0 0 0.5284 1 42679 42679 32.117 1.8922 1 47981000 + 6092 18744 4137 4226 7078 7078 0.0435899749447799 DLVNPVPV 8 Unmodified _DLVNPVPV_ 0 0 0 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.484375 1 852.482545 851.475269 -1.1797 -0.0010056 0.79675 0.00067922 -0.38292 -0.00032643 852.4831722286257 77.487 0.48504 77.005 76.784 77.269 -0.4826 58 22 3 0 0 0 0.63229 1 42546 42546 23.148 1.4018 1 28113000 + 6093 18744 4137 4226 7079 7079 0.0435899749447799 DLVNPVPV 8 Unmodified _DLVNPVPV_ 0 0 0 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 852.4835205078125 1 852.482545 851.475269 0.48067 0.00040976 0.16006 0.00013644 0.64072 0.00054621 852.482628101438 85.698 0.67925 79.522 79.21 79.889 -6.1757 102 38 4 0 0 0 0.21098 1 56286 56286 68.081 9.4019 1 222790000 + 6094 18744 4137 4226 7080 7080 0.0435899749447799 DLVPGDSDY 9 Unmodified _DLVPGDSDY_ 0 0 0 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7138061523438 2 490.714005 979.413456 0.37689 0.00018495 0.096674 4.7439E-05 0.47357 0.00023239 490.7139014875651 27.759 0.34085 24.723 24.541 24.882 -3.0365 26 17 2 0 0 0 0.41742 1 15489 15489 11.64 0 1 12534000 6095 10250 4138 4227 7081 7081 -0.07707398715319869 DLVPPLPVTR 10 Unmodified _DLVPPLPVTR_ 0 0 0 ENSG00000129595|ENST00000261486|EPB41L4A;ENST00000507810.5_1_5:111479536-111545647:-|nuORF ENSG00000129595|ENST00000261486|EPB41L4A;ENST00000507810.5_1_5:111479536-111545647:-|nuORF ENSG00000129595|ENST00000261486|EPB41L4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5581359863281 3 369.557125 1105.64954 0.41788 0.00015443 2.0461 0.00075615 2.464 0.00091058 369.55767767640003 47.921 0.46302 47.882 47.62 48.083 -0.038643 42 22 3 0 0 0 0.36296 1 25808 25808 16.275 0 1 7919200 6096 4152;14546 4139 4228 7082 7082 0.10094577919812764 DLVQHLNLI 9 Unmodified _DLVQHLNLI_ 0 0 0 ENST00000435844.3_2_20:18548090-18550131:+|nuORF ENST00000435844.3_2_20:18548090-18550131:+|nuORF ENST00000435844.3_2_20:18548090-18550131:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.808349609375 2 532.808574 1063.60259 -0.34035 -0.00018134 0.54792 0.00029194 0.20757 0.00011059 533.3102937564173 61.253 0.4531 60.763 60.598 61.051 -0.48932 65 21 4 0 0 0 0.1773 1 33457 33457 25.399 6.1423 1 13770000 6097 13321 4140 4229 7083 7083 0.07333718368658992 DLVSYVYKYF 10 Unmodified _DLVSYVYKYF_ 0 0 0 REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.93017578125 3 432.88854 1295.64379 0.78232 0.00033866 -4.3046 -0.0018634 -3.5223 -0.0015248 433.2223475636932 66.344 0.32306 60.168 59.992 60.315 -6.1757 23 17 2 0 0 0 0.2399 1 43085 43085 0.69767 0.1345 1 6100800 + 6098 17381 4141 4230 7084 7084 0.007794346174705424 DLVTELPVLQG 11 Unmodified _DLVTELPVLQG_ 0 0 0 REV__ENSG00000106992|ENST00000644144|AK1 REV__ENSG00000106992|ENST00000644144|AK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.7510986328125 2 592.332079 1182.6496 1.8745 0.0011103 -0.30781 -0.00018232 1.5667 0.00092799 592.3319278326458 62.624 0.66218 56.448 56.174 56.836 -6.1757 98 33 4 0 0 0 0.28953 1 40539 40539 8.7454 0 1 101550000 + 6099 18545 4142 4231 7085 7085 0.06558533129145871 DLWGPFAKMR 10 Unmodified _DLWGPFAKMR_ 0 0 0 REV__ENST00000541008.5_1_14:22869535-22901673:-|nuORF REV__ENST00000541008.5_1_14:22869535-22901673:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.8158569335938 2 610.815876 1219.6172 NaN NaN NaN NaN NaN NaN NaN 18.843 1 18.843 18.343 19.343 0 0 0 0 0.99248 1 9394 9394 1.4819 0.41044 1 + 6100 28526 4143 4232 7086 7086 0.01617467245159787 DLWKQLWELSV 11 Unmodified _DLWKQLWELSV_ 0 0 0 REV__nc|ENSG00000090686|Q86UV5-3|USP48 REV__nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 708.8809204101562 2 708.879727 1415.7449 0.94086 0.00066696 0.45231 0.00032063 1.3932 0.00098759 708.8799714202122 96.073 0.824 89.898 89.446 90.27 -6.1757 125 50 3 0 0 0 0.44182 1 63669 63669 19.362 0.98885 1 33683000 + 6101 17869 4144 4233 7087 7087 0.053658863201917484 DLWLEREVF 9 Unmodified _DLWLEREVF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.811767578125 2 603.811313 1205.60807 -0.11554 -6.9763E-05 1.1329 0.00068407 1.0174 0.00061431 603.8120101458371 83.401 0.39072 83.401 83.202 83.593 0 53 18 4 0 0 0 0.096584 2 46207 46207;46300 42.312 22.951 1 3383100 6102 5461 4145 4234 7088;7089 7088 0.013493971604702892 DLWLEREVF 9 Unmodified _DLWLEREVF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.811767578125 2 603.811313 1205.60807 0.49976 0.00030176 0.043408 2.6211E-05 0.54316 0.00032797 603.8112578494932 83.908 0.33044 83.409 83.241 83.572 -0.49962 43 13 4 0 0 0 0.046359 2 45884 45884;45984 57.249 37.992 1 5539000 6103 5461 4145 4234 7090;7091 7090 0.013493971604702892 DLWRRGSY 8 Unmodified _DLWRRGSY_ 0 0 0 REV__ENSG00000198746|ENST00000361720|GPATCH3 REV__ENSG00000198746|ENST00000361720|GPATCH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7691040039062 2 526.76724 1051.51993 0.073989 3.8975E-05 1.2148 0.00063994 1.2888 0.00067891 526.7676085470271 45.153 0.19399 45.153 45.036 45.23 0 14 9 2 0 0 0 0.74163 1 24604 24604 13.508 0.46542 1 3657200 + 6104 24051 4146 4235 7092 7092 -0.0037717863947364094 DLYCKYCF 8 Unmodified _DLYCKYCF_ 0 0 0 ENST00000477683.5_1_17:19250580-19265912:-|nuORF;nc|ENSG00000108641|Q9UPM9-2|B9D1;ENSG00000108641|ENST00000261499|B9D1 ENST00000477683.5_1_17:19250580-19265912:-|nuORF ENST00000477683.5_1_17:19250580-19265912:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7247924804688 2 527.722264 1053.42997 NaN NaN NaN NaN NaN NaN NaN 79.288 1 78.802 78.302 79.302 -0.48596 0 0 0 0.97444 1 43428 43428 0.79363 0.19213 1 6105 2593 4147 4236 7093 7093 -0.0946031235459941 DLYESVDKQKW 11 Unmodified _DLYESVDKQKW_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3;ENST00000515207.1_1_5:94872443-94877598:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.8507080078125 2 705.848624 1409.6827 0.31475 0.00022217 0.009828 6.9371E-06 0.32458 0.0002291 705.8487279232364 92.406 0.19646 91.925 91.836 92.032 -0.48092 13 8 2 0 0 0 0.70069 1 50517 50517 4.1895 1.1943 1 462640 6106 10120 4148 4237 7094 7094 -0.005758848188406773 DLYFRSKLF 9 Unmodified _DLYFRSKLF_ 0 0 0 REV__ENST00000491263.1_1_1:163043981-163044347:+|nuORF REV__ENST00000491263.1_1_1:163043981-163044347:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2223815917969 3 396.885241 1187.63389 1.5554 0.00061733 0.73542 0.00029188 2.2909 0.00090921 396.8848426086142 95.711 0.18648 89.535 89.431 89.618 -6.1757 18 11 2 0 0 0 0.23158 1 63390 63390 14.405 5.9611 1 13955000 + 6107 19088 4149 4238 7095 7095 0.04758291402731629 DLYLWLSYR 9 Unmodified _DLYLWLSYR_ 0 0 0 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.2180786132812 3 410.21688 1227.62881 0.54467 0.00022343 0.041019 1.6827E-05 0.58569 0.00024026 410.2167958031865 46.056 0.3494 46.056 45.882 46.232 0 50 16 4 0 0 0 0.46501 2 25107 25107;25220 6.1918 1.7547 1 16113000 6108 6459 4150 4239 7096;7097 7096 0.024099875401361714 DLYLWLSYR 9 Unmodified _DLYLWLSYR_ 0 0 0 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.217041015625 3 410.21688 1227.62881 0.52674 0.00021608 -0.15639 -6.4154E-05 0.37035 0.00015193 410.2167325409572 46.356 0.30885 46.02 45.86 46.169 -0.33664 50 15 4 0 0 0 0.45045 2 24870 24769;24870 6.6304 2.2242 1 111100000 6109 6459 4150 4239 7098;7099 7099 0.024099875401361714 DLYQKFMAYL 10 Unmodified _DLYQKFMAYL_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3217163085938 2 646.323199 1290.63185 NaN NaN NaN NaN NaN NaN NaN 54.423 1 53.957 53.457 54.457 -0.46664 0 0 0 0.94014 1 29491 29491 6.2058 0 1 6110 6643 4151 4240 7100 7100 -0.0018450539735113125 DLYTPNIW 8 Unmodified _DLYTPNIW_ 0 0 0 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.3189086914062 2 511.2531 1020.49165 0.13619 6.963E-05 0.97907 0.00050055 1.1153 0.00057018 511.25363135192976 99.755 0.20338 93.579 93.474 93.677 -6.1757 21 13 3 0 0 0 8.7369 1 66495 66495 12.532 0 1 35963000 + 6111 17782 4152 4241 7101 7101 -0.017779213394533144 DMAEPYSPF 9 Unmodified _DMAEPYSPF_ 0 0 0 REV__nc|ENSG00000183287|Q6UXH8-2|CCBE1 REV__nc|ENSG00000183287|Q6UXH8-2|CCBE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7545166015625 2 528.720775 1055.427 0.82786 0.00043771 -1.3617 -0.00071994 -0.53381 -0.00028224 528.7194996644034 60.424 0.2945 60.424 60.199 60.494 0 21 12 2 0 0 0 0.21367 1 33613 33613 4.756 0 1 1341000 + 6112 23334 4153 4242 7102 7102 -0.09849864207740211 DMAKVFVEY 9 Oxidation (M) _DM(Oxidation (M))AKVFVEY_ DM(1)AKVFVEY DM(57)AKVFVEY 0 0 1 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2662353515625 2 559.26535 1116.51615 0.84318 0.00047156 -0.13956 -7.8049E-05 0.70363 0.00039352 559.2654254784342 47.84 0.39048 47.84 47.623 48.014 0 64 18 5 0 0 0 0.026499 1 26144 26144 57.249 35.502 1 25890000 6113 2714 4154 4243 7103 7103 468 -0.037450292482162695 DMAKVFVEY 9 Oxidation (M) _DM(Oxidation (M))AKVFVEY_ DM(1)AKVFVEY DM(46)AKVFVEY 0 0 1 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2658081054688 2 559.26535 1116.51615 1.3266 0.00074194 0.050049 2.7991E-05 1.3767 0.00076993 559.2654131293145 54.376 0.46722 48.511 48.23 48.698 -5.8653 69 28 3 0 0 0 0.047714 1 34334 34334 45.74 18.856 1 42791000 6114 2714 4154 4243 7104 7104 468 -0.037450292482162695 DMAKVFVEY 9 Oxidation (M) _DM(Oxidation (M))AKVFVEY_ 0 0 1 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.26535 1116.51615 0.71308 0.0003988 0.551 0.00030816 1.2641 0.00070696 559.2656795473657 48.168 0.29063 47.815 47.634 47.924 -0.3526 0.0045827 0.00035488 NaN 57.249 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3725600 6115 2714 4154 4243 468 -0.037450292482162695 DMAKVFVEY 9 Oxidation (M) _DM(Oxidation (M))AKVFVEY_ 0 0 1 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.26535 1116.51615 0.83398 0.00046642 1.2318 0.00068889 2.0658 0.0011553 559.2657899329771 47.815 0.22408 47.777 47.7 47.924 -0.038643 -0.034114 0.0011163 NaN 57.249 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 730730 6116 2714 4154 4243 468 -0.037450292482162695 DMAKVFVEY 9 Unmodified _DMAKVFVEY_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS AL20221201_MKP_PDAC_01 4 551.2718505859375 2 551.267893 1100.52123 NaN NaN NaN NaN NaN NaN NaN 66.626 1 60.45 59.95 60.95 -6.1757 0 0 0 0.26013 1 43344 43344 27.223 10.281 1 6117 2714 4154 4244 7105 7105 -0.02500725385584701 DMASIAYLNS 10 Unmodified _DMASIAYLNS_ 0 0 0 REV__ENSG00000196814|ENST00000361171|MVB12B REV__ENSG00000196814|ENST00000361171|MVB12B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2646484375 2 542.752607 1083.49066 -0.24918 -0.00013525 -1.2334 -0.00066941 -1.4825 -0.00080466 542.7502128378546 55.233 0.35991 55.233 55.077 55.437 0 24 15 2 0 0 0 0.22811 1 30652 30652 14.838 4.0143 1 8009600 + 6118 23871 4155 4245 7106 7106 -0.047745037706590665 DMATVFPA 8 Unmodified _DMATVFPA_ 0 0 0 nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000594549.1_1_19:49971616-49973721:+|nuORF;ENST00000599652.5_1_19:49969097-49972327:+|nuORF nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENST00000599652.5_1_19:49969097-49972327:+|nuORF nc|ENSG00000161618|Q8IZ83-3|ALDH16A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2020263671875 2 426.202021 850.38949 0.22809 9.7211E-05 -0.32572 -0.00013882 -0.097635 -4.1612E-05 426.20175555618954 75.06 0.1887 75.06 74.948 75.137 0 14 10 2 0 0 0 0.6895 1 41762 41762 18.135 8.7875 1 514990 6119 6797;15792 4156 4246 7107 7107 -0.04168910682699334 DMCRKEHWLHF 11 Unmodified _DMCRKEHWLHF_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.2578735351562 3 501.232429 1500.67546 1.1384 0.0005706 2.6213 0.0013139 3.7597 0.0018845 501.2341052890911 48.408 0.3308 43.174 42.988 43.318 -5.2339 28 19 3 0 0 0 0.30073 1 30232 30232 7.4771 2.7611 1 17716000 + 6120 20888 4157 4247 7108 7108 -0.05485219171873723 DMEIAYPITC 10 Unmodified _DMEIAYPITC_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2545776367188 2 578.256668 1154.49878 0.40513 0.00023427 2.0746 0.0011996 2.4797 0.0014339 578.7614262398446 55.975 0.33385 50.054 49.861 50.195 -5.9211 31 19 2 0 0 0 0.52888 1 35609 35609 14.838 0.93222 1 21369000 6121 6858 4158 4248 7109 7109 -0.07228692845524165 DMHCVSNLI 9 Unmodified _DMHCVSNLI_ 0 0 0 ENST00000455587.3_1_X:70757749-70757863:+|nuORF ENST00000455587.3_1_X:70757749-70757863:+|nuORF ENST00000455587.3_1_X:70757749-70757863:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2352905273438 2 516.23607 1030.45759 0.46026 0.00023761 -4.1258 -0.0021299 -3.6656 -0.0018923 516.2330031238216 83.024 0.36171 82.527 82.357 82.719 -0.49751 23 14 2 0 0 0 0.53666 1 45411 45411 5.2307 2.3415 1 993490 6122 13589 4159 4249 7110 7110 -0.05642409094343748 DMHMDVDV 8 Unmodified _DMHMDVDV_ 0 0 0 REV__ENSG00000135697|ENST00000258168|BCO1 REV__ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.1896362304688 2 481.191328 960.368103 -0.13965 -6.7196E-05 -0.10165 -4.8913E-05 -0.2413 -0.00011611 481.19086746707114 23.668 0.62894 23.668 23.326 23.955 0 38 31 2 0 0 0 0.80624 1 12045 12045 2.8892 0 1 525400 + 6123 20090 4160 4250 7111 7111 -0.11366663773719665 DMIKEFISM 9 2 Oxidation (M) _DM(Oxidation (M))IKEFISM(Oxidation (M))_ DM(1)IKEFISM(1) DM(66)IKEFISM(66) 0 0 2 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000496420.5_1_7:92131189-92135604:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.26611328125 2 573.264493 1144.51443 0.3608 0.00020683 3.8879 0.0022288 4.2487 0.0024356 573.2668302242822 45.549 0.29107 45.549 45.512 45.803 0 20 14 2 0 0 0 0.017075 1 24882 24882 66.457 32.055 1 4246600 6124 4039 4161 4251 7112 7112 723;724 -0.05204406328471123 DMKEAIGRLF 10 Unmodified _DMKEAIGRLF_ 0 0 0 ENSG00000180433|ENST00000641861|OR6K6;nc|ENSG00000180433|Q8NGW6|OR6K6 ENSG00000180433|ENST00000641861|OR6K6 ENSG00000180433|ENST00000641861|OR6K6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2111206054688 3 393.877869 1178.61178 0.38943 0.00015339 0.038848 1.5301E-05 0.42828 0.00016869 394.21093275127765 15.493 0.11697 12.965 12.893 13.01 -2.5273 40 27 2 0 0 0 0.69917 1 7932 7932 1.4551 0 1 1813100 6125 8902 4162 4252 7113 7113 0.029617436626722338 DMKEALDLEE 10 Unmodified _DMKEALDLEE_ 0 0 0 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1834716796875 3 398.184916 1191.53292 -0.12581 -5.0094E-05 -2.0478 -0.00081542 -2.1737 -0.00086552 398.1839465197826 40.225 0.24168 40.225 40.11 40.352 0 18 11 2 0 0 0 0.68539 1 21603 21603 2.4348 0 1 2444800 + 6126 18846 4163 4253 7114 7114 -0.055185731529036275 DMLKDFAEMS 10 Unmodified _DMLKDFAEMS_ 0 0 0 REV__CAP2|p.V46M|1|0.17|ENSG00000112186|chr6:17426604-17426604|G/A|missense_variant REV__CAP2|p.V46M|1|0.17|ENSG00000112186|chr6:17426604-17426604|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7600708007812 2 593.759575 1185.5046 -0.62886 -0.00037339 -1.008 -0.00059848 -1.6368 -0.00097187 593.7589830847412 27.174 0.2183 27.174 27.055 27.273 0 26 10 4 0 0 0 0.38092 1 13974 13974 22.736 4.6013 1 5433500 + 6127 16754 4164 4254 7115 7115 -0.08073594333859546 DMLMEPDEQF 10 Unmodified _DMLMEPDEQF_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.5041809082031 3 418.838752 1253.49443 NaN NaN NaN NaN NaN NaN NaN 40.813 1 40.813 40.313 41.313 0 0 0 0 0.81803 1 21963 21963 11.518 1.9739 1 + 6128 29555 4165 4255 7116 7116 -0.12218202059102623 DMLMPLYPLL 10 Unmodified _DMLMPLYPLL_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.321044921875 2 603.319071 1204.62359 NaN NaN NaN NaN NaN NaN NaN 80.906 1 80.965 80.465 81.465 0.058823 0 0 0 0.38297 1 44735 44735 32.305 0.18852 1 + 6129 23822 4166 4256 7117 7117 0.02946224361653549 DMLTSEPVKF 10 Unmodified _DMLTSEPVKF_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7893676757812 2 583.791732 1165.56891 -0.44115 -0.00025754 -2.7014 -0.0015771 -3.1425 -0.0018346 583.7900052099732 77.099 0.3092 76.616 76.434 76.743 -0.4826 32 13 3 0 0 0 0.69377 1 42166 42166 3.5965 1.5367 1 1232100 + 6130 19281 4167 4257 7118 7118 -0.007250711854112524 DMLTSEPVKF 10 Unmodified _DMLTSEPVKF_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.791732 1165.56891 -0.44115 -0.00025754 -2.7014 -0.0015771 -3.1425 -0.0018346 583.7900052099732 77.099 0.3092 76.616 76.434 76.743 -0.4826 0.0073926 0.00026567 NaN 3.5965 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1232100 + 6131 19281 4167 4257 -0.007250711854112524 DMMDKKDF 8 Unmodified _DMMDKKDF_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2242431640625 2 515.222628 1028.4307 NaN NaN NaN NaN NaN NaN NaN 83.491 1 83.491 82.991 83.991 0 0 0 0 0.97444 1 46303 46303 2.5775 0.27475 1 + 6132 23975 4168 4258 7119 7119 -0.08237517705515529 DMPVLMVP 8 Unmodified _DMPVLMVP_ 0 0 0 ENST00000560634.1_1_15:84858634-84860056:+|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2308654785156 2 451.229725 900.444896 1.2157 0.00054854 1.1862 0.00053523 2.4018 0.0010838 451.23019827824635 57.92 0.41644 57.854 57.554 57.97 -0.066036 43 20 3 0 0 0 0.80676 1 31542 31542 2.5775 2.5775 1 8809500 6133 15312 4169 4259 7120 7120 -0.009308204865760672 DMPYLPKWT 9 Unmodified _DMPYLPKWT_ 0 0 0 REV__ENST00000309993.2_1_3:135870719-135870887:-|nuORF REV__ENST00000309993.2_1_3:135870719-135870887:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7862548828125 2 575.78371 1149.55287 NaN NaN NaN NaN NaN NaN NaN 75.683 1 75.683 75.183 76.183 0 0 0 0 0.84564 1 42094 42094 2.0598 0.21551 1 + 6134 25411 4170 4260 7121 7121 -0.015927326316841572 DMRNVESNK 9 Unmodified _DMRNVESNK_ 0 0 0 REV__nc|ENSG00000164691|Q8N103-4|TAGAP REV__nc|ENSG00000164691|Q8N103-4|TAGAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2991943359375 2 546.758755 1091.50296 0.57124 0.00031233 -2.7975 -0.0015295 -2.2262 -0.0012172 546.7572861312533 38.537 0.31113 38.537 38.414 38.725 0 34 15 4 0 0 0 0.17331 1 20610 20610 22.736 4.6013 1 8461700 + 6135 21940 4171 4261 7122 7122 -0.039134673075977844 DMRVEKRRKRF 11 Unmodified _DMRVEKRRKRF_ 0 0 0 REV__ENST00000478345.1_1_6:117862091-117866721:+|nuORF REV__ENST00000478345.1_1_6:117862091-117866721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.6252136230469 3 507.624538 1519.85178 1.1648 0.00059127 -0.78354 -0.00039774 0.38124 0.00019353 507.62419877701836 50.535 0.36345 50.481 50.305 50.669 -0.053871 30 17 2 0 0 0 0.73237 1 27390 27390 1.2148 0.20126 1 8578800 + 6136 27631 4172 4262 7123 7123 0.11265158053538471 DMRYVWGGF 9 Unmodified _DMRYVWGGF_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.D677Vfs*2|1|0.25|ENSG00000165029|chr9:104828985-104829001|CCAGAGGATGCTGTTGT/-|frameshift_variant ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3065795898438 2 565.758027 1129.5015 3.6288 0.002053 1.9211 0.0010869 5.5499 0.0031399 566.2609650838689 99.592 0.16086 99.555 99.452 99.613 -0.036301 13 5 3 0 0 0 0.21367 1 55286 55286 4.756 1.1595 1 1642900 6137 7281 4173 4263 7124 7124 -0.05807056605681282 DMSSSCHHL 9 Unmodified _DMSSSCHHL_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.6988220214844 2 508.699851 1015.38515 0.56131 0.00028554 -2.1768 -0.0011073 -1.6155 -0.0008218 508.69870679432347 67.088 0.18192 67.088 66.971 67.153 0 11 7 2 0 0 0 0.54444 1 37442 37442 4.756 1.8668 1 887300 + 6138 29555 4174 4264 7125 7125 -0.12192743167906883 DMTHYYLHF 9 Unmodified _DMTHYYLHF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.51513671875 3 409.51482 1225.52263 -0.07472 -3.0599E-05 1.0971 0.00044926 1.0223 0.00041867 409.5151869520767 37.583 0.21908 37.311 37.181 37.4 -0.27133 15 8 3 0 0 0 0.58466 1 19762 19762 1.1933 0 1 1110400 6139 2101 4175 4265 7126 7126 -0.0811109129685974 DMVVEPPAL 9 Unmodified _DMVVEPPAL_ 0 0 0 REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF REV__ENST00000455094.1_1_6:30454046-30454364:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.749755859375 2 485.749336 969.484119 0.28764 0.00013972 -0.12412 -6.0289E-05 0.16353 7.9434E-05 485.74927072068374 49.073 0.36625 49.073 48.91 49.277 0 31 17 2 0 0 0 0.39863 1 27089 27089 12.532 2.3482 1 15058000 + 6140 19844 4176 4266 7127 7127 -0.0018439693135405832 DMYIQITDF 9 Unmodified _DMYIQITDF_ 0 0 0 nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000205918|Q6A1A2|PDPK2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5106811523438 3 382.510964 1144.51106 NaN NaN NaN NaN NaN NaN NaN 13.755 1 13.755 13.255 14.255 0 0 0 0 0.85798 1 6508 6508 0.23584 0 1 6141 16515 4177 4267 7128 7128 -0.055413331108638886 DMYLMGCF 8 Unmodified _DMYLMGCF_ 0 0 0 nc|ENSG00000145864|P47870-3|GABRB2;nc|ENSG00000145864|P47870-4|GABRB2;nc|ENSG00000166206|P28472-4|GABRB3;nc|ENSG00000166206|P28472-3|GABRB3;nc|ENSG00000166206|P28472-2|GABRB3;ENSG00000166206|ENST00000311550|GABRB3;nc|ENSG00000145864|P47870-1|GABRB2;ENSG00000145864|ENST00000393959|GABRB2 nc|ENSG00000145864|P47870-3|GABRB2 nc|ENSG00000145864|P47870-3|GABRB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.2094421386719 2 490.189742 978.364932 1.11 0.00054413 0.087082 4.2687E-05 1.1971 0.00058681 490.1899110092146 88.442 0.41515 82.266 82.043 82.459 -6.1757 44 22 3 0 0 0 8.7369 1 58217 58217 2.5775 0 1 8329600 6142 5734 4178 4268 7129 7129 -0.12511630152084763 DNAERESV 8 Unmodified _DNAERESV_ 0 0 0 REV__ENST00000481797.5_1_1:153701080-153719633:+|nuORF REV__ENST00000481797.5_1_1:153701080-153719633:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.21044921875 2 460.209421 918.404288 NaN NaN NaN NaN NaN NaN NaN 17.823 1 15.236 14.736 15.736 -2.5866 0 0 0 0.92941 1 9351 9351 14.838 2.3067 1 + 6143 20656 4179 4269 7130 7130 -0.058177472809802566 DNCLNATLSF 10 Unmodified _DNCLNATLSF_ 0 0 0 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2494506835938 2 549.250231 1096.48591 1.3654 0.00074994 1.4496 0.00079617 2.8149 0.0015461 549.2507933861148 47.429 0.49282 42.195 42.057 42.55 -5.2339 37 28 2 0 0 0 0.16361 1 29547 29547 38.176 1.6694 1 22356000 6144 8797 4180 4270 7131 7131 -0.05847387913399871 DNDDQDGI 8 Unmodified _DNDDQDGI_ 0 0 0 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1699523925781 2 446.169961 890.325369 0.75874 0.00033853 -0.39958 -0.00017828 0.35916 0.00016025 446.1696776191177 68.032 0.67159 61.856 61.499 62.17 -6.1757 92 39 3 0 0 0 0.80975 1 44494 44494 0.79363 0.79363 1 107470000 + 6145 21129 4181 4271 7132 7132 -0.12418019305926009 DNEAWCTVN 9 Unmodified _DNEAWCTVN_ 0 0 0 REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.1434020996094 3 351.143163 1050.40766 NaN NaN NaN NaN NaN NaN NaN 46.418 1 41.338 40.838 41.838 -5.0805 0 0 0 0.83329 1 28664 28664 2.086 0 1 + 6146 24018 4182 4272 7133 7133 -0.11552820498650362 DNEFYFRYPSF 11 Unmodified _DNEFYFRYPSF_ 0 0 0 ENSG00000132677|ENST00000537040|RHBG ENSG00000132677|ENST00000537040|RHBG ENSG00000132677|ENST00000537040|RHBG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.5547180175781 3 495.55422 1483.64083 NaN NaN NaN NaN NaN NaN NaN 51.093 1 51.093 50.593 51.593 0 0 0 0 0.93893 1 28198 28198 1.3296 0.82369 1 6147 4436 4183 4273 7134 7134 -0.0816444050735754 DNEGERNML 9 Unmodified _DNEGERNML_ 0 0 0 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 MSMS AL20221201_MKP_PDAC_01 4 359.8271789550781 3 359.825834 1076.45567 NaN NaN NaN NaN NaN NaN NaN 45.231 1 40.276 39.776 40.776 -4.9549 0 0 0 0.7243 1 27729 27729 5.2969 1.3525 1 6148 6965 4184 4274 7135 7135 -0.07949746578583472 DNFLFLYV 8 Unmodified _DNFLFLYV_ 0 0 0 REV__ENSG00000187510|ENST00000344636|PLEKHG7 REV__ENSG00000187510|ENST00000344636|PLEKHG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1030.223388671875 1 1030.52441 1029.51713 0.31465 0.00032426 -1.4331 -0.0014769 -1.1185 -0.0011526 1030.521871941647 91.376 0.22767 90.882 90.756 90.984 -0.49458 17 10 2 0 0 0 0.80505 1 50001 50001 3.5965 0.31518 1 693080 + 6149 23637 4185 4275 7136 7136 0.003555531829761094 DNFLFLYV 8 Unmodified _DNFLFLYV_ 0 0 0 REV__ENSG00000187510|ENST00000344636|PLEKHG7 REV__ENSG00000187510|ENST00000344636|PLEKHG7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1030.52441 1029.51713 0.31465 0.00032426 -1.4331 -0.0014769 -1.1185 -0.0011526 1030.521871941647 91.376 0.22767 90.882 90.756 90.984 -0.49458 0 0 NaN 3.5965 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 693080 + 6150 23637 4185 4275 0.003555531829761094 DNFWQKQRTNF 11 Unmodified _DNFWQKQRTNF_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.356201171875 2 742.357482 1482.70041 0.10167 7.5474E-05 -1.8211 -0.0013519 -1.7194 -0.0012764 742.356021341729 70.66 0.28533 70.183 70.083 70.368 -0.47735 35 20 3 0 0 0 0.68427 1 38639 38639 5.7319 2.1354 1 2853900 6151 636 4186 4276 7137 7137 -0.02163124773301206 DNFWQKQRTNF 11 Unmodified _DNFWQKQRTNF_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.35595703125 2 742.357482 1482.70041 NaN NaN NaN NaN NaN NaN NaN 70.813 1 70.336 69.836 70.836 -0.47735 0 0 0 0.94184 1 38747 38747 1.1933 0.735 1 6152 636 4186 4276 7138 7138 -0.02163124773301206 DNFWQKQRTNF 11 Unmodified _DNFWQKQRTNF_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20221201_MKP_PDAC_01 4 742.8588256835938 2 742.357482 1482.70041 0.49203 0.00036526 0.24752 0.00018375 0.73955 0.00054901 742.8591334101533 78.793 0.34149 72.618 72.468 72.809 -6.1757 47 19 3 0 0 0 0.65846 2 51553 51553;51698 8.1555 3.6267 1 13629000 6153 636 4186 4276 7139;7140 7139 -0.02163124773301206 DNFWQKQRTNF 11 Unmodified _DNFWQKQRTNF_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 742.357482 1482.70041 0.6204 0.00046056 -1.0434 -0.00077457 -0.423 -0.00031402 742.3566301377505 70.159 0.13841 70.195 70.133 70.271 0.035507 0.0061358 0.0010338 NaN 5.7319 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1732600 6154 636 4186 4276 -0.02163124773301206 DNGKMVCSI 9 Unmodified _DNGKMVCSI_ 0 0 0 nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000120328|ENST00000239450|PCDHB12 nc|ENSG00000120328|Q9Y5F1-2|PCDHB12 nc|ENSG00000120328|Q9Y5F1-2|PCDHB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7253112792969 2 483.722795 965.431037 -0.26215 -0.00012681 3.0663 0.0014832 2.8041 0.0013564 483.72414348131076 25.664 0.25123 25.664 25.507 25.758 0 16 11 2 0 0 0 0.5029 1 13142 13142 7.2892 1.5288 1 611410 6155 3510 4187 4277 7141 7141 -0.05306097985669567 DNGNDDDNDDD 11 Unmodified _DNGNDDDNDDD_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.1819458007812 2 612.181982 1222.34941 NaN NaN NaN NaN NaN NaN NaN 6.0273 1 6.0362 5.5362 6.5362 0.0089307 0 0 0 0.9435 1 3029 3029 0 0 1 + 6156 20874 4188 4278 7142 7142 -0.25286875400888675 DNGNDDDNDDD 11 Unmodified _DNGNDDDNDDD_ 0 0 0 REV__ENSG00000147174|ENST00000373696|GCNA REV__ENSG00000147174|ENST00000373696|GCNA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.180908203125 2 612.181982 1222.34941 NaN NaN NaN NaN NaN NaN NaN 9.4215 1 9.4391 8.9391 9.9391 0.017581 0 0 0 0.9435 1 4673 4673 0 0 1 + 6157 20874 4188 4278 7143 7143 -0.25286875400888675 DNGRLMKP 8 Unmodified _DNGRLMKP_ 0 0 0 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.4839477539062 1 930.482562 929.475285 0.39876 0.00037103 1.0318 0.00096005 1.4305 0.0013311 930.4834890236132 97.293 0.55611 97.293 96.972 97.528 0 67 27 3 0 0 0 0.81007 1 53824 53824 0.6015 0.6015 1 5511500 + 6158 17904 4189 4279 7144 7144 0.007726742228328476 DNGRLMKP 8 Unmodified _DNGRLMKP_ 0 0 0 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.483642578125 1 930.482562 929.475285 0.3039 0.00028277 0.39044 0.0003633 0.69434 0.00064607 930.4827464862807 97.713 0.7915 97.471 97.099 97.89 -0.24277 92 35 3 0 0 0 0.81007 1 53300 53300 0.6015 0.6015 1 34081000 + 6159 17904 4189 4279 7145 7145 0.007726742228328476 DNHPNWDSDF 10 Unmodified _DNHPNWDSDF_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.7424926757812 2 623.741616 1245.46868 0.2834 0.00017677 -1.3317 -0.00083062 -1.0483 -0.00065385 623.7418492215999 63.255 0.22149 63.255 63.073 63.295 0 12 8 2 0 0 0 0.69917 1 35244 35244 2.9952 0 1 579820 + 6160 29773 4190 4280 7146 7146 -0.14423592194862067 DNHPNWDSDF 10 Unmodified _DNHPNWDSDF_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1634521484375 3 416.163503 1245.46868 0.0083901 3.4916E-06 0.20052 8.345E-05 0.20891 8.6942E-05 416.1636062477276 63.249 0.39701 63.249 63.008 63.405 0 38 16 3 0 0 0 0.71276 1 35315 35315 0.62683 0 1 3583800 + 6161 29773 4190 4280 7147 7147 -0.14423592194862067 DNHQEDEF 8 Unmodified _DNHQEDEF_ 0 0 0 ENSG00000159708|ENST00000329956|LRRC36;nc|ENSG00000159708|Q1X8D7-3|LRRC36;nc|ENSG00000159708|Q1X8D7-2|LRRC36 ENSG00000159708|ENST00000329956|LRRC36 ENSG00000159708|ENST00000329956|LRRC36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1966552734375 2 517.19651 1032.37847 0.10769 5.5698E-05 -0.29126 -0.00015064 -0.18357 -9.494E-05 517.1963470603279 76.346 0.37326 75.866 75.617 75.99 -0.47945 43 15 4 0 0 0 0.80624 1 41735 41735 2.8892 0 1 2123200 6162 6669 4191 4281 7148 7148 -0.1364264152330179 DNNRSLDLD 9 Unmodified _DNNRSLDLD_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2472534179688 2 531.246535 1060.47852 NaN NaN NaN NaN NaN NaN NaN 29.032 1 28.97 28.47 29.47 -0.062159 0 0 0 0.32622 1 15004 15004 23.79 3.3362 1 + 6163 7667 4192 4282 7149 7149 -0.049304041894629336 DNPACPCLLL 10 Unmodified _DNPACPCLLL_ 0 0 0 REV__nc|ENSG00000146013|O60609-2|GFRA3 REV__nc|ENSG00000146013|O60609-2|GFRA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2189331054688 2 529.754095 1057.49364 0.45192 0.00023941 4.302 0.002279 4.754 0.0025184 529.7566653062779 66.072 0.3017 66.072 65.959 66.26 0 18 14 2 0 0 0 0.23162 1 36921 36921 4.897 0 1 1630800 + 6164 20805 4193 4283 7150 7150 -0.03280951917463426 DNQEYFERH 9 Unmodified _DNQEYFERH_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1795043945312 3 413.179265 1236.51596 -0.6271 -0.0002591 0.6129 0.00025324 -0.014202 -5.8679E-06 413.17950463295057 17.623 0.26854 17.623 17.455 17.724 0 95 44 3 0 0 0 0.60664 1 8717 8717 0.96228 0.18574 1 1848400 6165 1083 4194 4284 7151 7151 -0.09283312923867015 DNQILSEIVE 10 Unmodified _DNQILSEIVE_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA;ENST00000482611.5_1_10:103552686-103559078:-|nuORF nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2965087890625 2 580.295693 1158.57683 NaN NaN NaN NaN NaN NaN NaN 16.477 1 16.482 15.982 16.982 0.0050564 0 0 0 0.97855 1 8264 8264 2.9952 0 1 6166 10088 4195 4285 7152 7152 0.003887793357080227 DNQKRKMNEF 10 Unmodified _DNQKRKMNEF_ 0 0 0 REV__ENSG00000203879|ENST00000447750|GDI1 REV__ENSG00000203879|ENST00000447750|GDI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2155151367188 3 437.215433 1308.62447 -0.3309 -0.00014468 -0.46557 -0.00020356 -0.79648 -0.00034823 437.2154320122795 19.101 0.15496 19.101 19.018 19.173 0 27 9 4 0 0 0 0.67046 1 9517 9517 6.1918 1.4759 1 4298400 + 6167 24126 4196 4286 7153 7153 -0.017498449450613407 DNQKRKMNEF 10 Unmodified _DNQKRKMNEF_ 0 0 0 REV__ENSG00000203879|ENST00000447750|GDI1 REV__ENSG00000203879|ENST00000447750|GDI1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 437.215433 1308.62447 -0.3309 -0.00014468 -0.46557 -0.00020356 -0.79648 -0.00034823 437.2154320122795 19.101 0.15496 19.101 19.018 19.173 0 0 0 NaN 6.1918 27 9 4 NaN NaN NaN NaN 0 NaN NaN 0 4298400 + 6168 24126 4196 4286 -0.017498449450613407 DNRDQEGFY 9 Unmodified _DNRDQEGFY_ 0 0 0 ENSG00000137634|ENST00000375478|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8289184570312 3 381.828232 1142.46287 1.5264 0.00058283 0.47818 0.00018258 2.0046 0.00076541 381.828538208448 32.339 0.36947 28.483 28.301 28.67 -3.8562 53 21 3 0 0 0 0.55144 1 18381 18381 2.4985 0 1 33748000 6169 4952 4197 4287 7154 7154 -0.10266690706498593 DNVFWGEHF 9 Unmodified _DNVFWGEHF_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1707763671875 3 384.169929 1149.48796 NaN NaN NaN NaN NaN NaN NaN 24.236 1 24.234 23.734 24.734 -0.0016766 0 0 0 0.82396 1 12381 12381 2.7352 0 1 6170 4867 4198 4288 7155 7155 -0.08080591113298397 DNVHLEYGVVY 11 Unmodified _DNVHLEYGVVY_ 0 0 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MSMS AL20221201_MKP_PDAC_01 4 436.548828125 3 436.547065 1306.61937 NaN NaN NaN NaN NaN NaN NaN 17.304 1 14.717 14.217 15.217 -2.5866 0 0 0 0.94144 1 9036 9036 1.4551 1.0469 1 6171 677 4199 4289 7156 7156 -0.0216782553604844 DNWMSKQEAF 10 Unmodified _DNWMSKQEAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.1852722167969 3 419.185251 1254.53392 0.36546 0.0001532 0.18552 7.7767E-05 0.55098 0.00023096 419.1854209791557 26.016 0.28611 23.065 22.913 23.199 -2.9511 26 17 2 0 0 0 0.67459 1 14269 14269 5.4027 1.5264 1 12713000 6172 9990 4200 4290 7157 7157 -0.08316313993373114 DNYSEEEYESF 11 Unmodified _DNYSEEEYESF_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;ENST00000552138.5_1_14:105821400-105836438:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.1769714355469 3 471.177255 1410.50994 -0.13186 -6.2127E-05 0.48878 0.0002303 0.35692 0.00016817 471.17738257860424 56.784 0.29237 56.298 56.186 56.479 -0.48554 25 13 2 0 0 0 0.73115 1 30844 30844 0.45452 0 1 4154800 6173 8832 4201 4291 7158 7158 -0.17889920736683962 DNYSLCFQL 9 Unmodified _DNYSLCFQL_ 0 0 0 REV__nc|ENSG00000204176|Q9BQS2-4|SYT15 REV__nc|ENSG00000204176|Q9BQS2-4|SYT15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1229858398438 3 368.167308 1101.4801 NaN NaN NaN NaN NaN NaN NaN 61.809 1 61.809 61.309 62.309 0 0 0 0 0.82739 1 34461 34461 2.4985 1.3051 1 + 6174 24143 4202 4292 7159 7159 -0.06658486425067167 DPADIIHDF 9 Unmodified _DPADIIHDF_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7466430664062 2 521.745639 1041.47673 0.56487 0.00029472 1.7096 0.00089198 2.2745 0.0011867 521.7469226057003 67.998 0.74334 67.998 67.719 68.463 0 92 35 4 0 0 0 0.010611 3 37990 37800;37894;37990 78.728 47.46 1 13407000 6175 4756 4203 4293 7160;7161;7162 7162 -0.04235413207447891 DPAFYHVFY 9 Unmodified _DPAFYHVFY_ 0 0 0 REV__CON__Q3T052 REV__CON__Q3T052 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7640380859375 2 579.766374 1157.5182 NaN NaN NaN NaN NaN NaN NaN 38.015 1 38.015 37.515 38.515 0 0 0 0 0.6032 1 20273 20273 12.532 4.6214 1 + + 6176 16878 4204 4294 7163 7163 -0.054262324480987445 DPAHAFEAF 9 Unmodified _DPAHAFEAF_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7288208007812 2 502.727249 1003.43995 0.68558 0.00034466 0.50977 0.00025627 1.1953 0.00060093 502.7273294645219 57.014 0.38848 57.014 56.813 57.201 0 41 16 3 0 0 0 0.16226 1 31674 31674 26.884 16.06 1 3830900 6177 7952 4205 4295 7164 7164 -0.06163665033329835 DPAHAFEAF 9 Unmodified _DPAHAFEAF_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.8116455078125 2 502.727249 1003.43995 1.5067 0.00075747 -0.55371 -0.00027836 0.95302 0.00047911 502.72715313849255 64.264 0.30622 58.088 57.935 58.241 -6.1757 29 15 2 0 0 0 0.1325 1 41593 41593 25.399 7.2643 1 8670600 6178 7952 4205 4295 7165 7165 -0.06163665033329835 DPAKQLYEE 9 Unmodified _DPAKQLYEE_ 0 0 0 ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7670288085938 2 546.764029 1091.5135 -0.26839 -0.00014675 2.8433 0.0015546 2.5749 0.0014079 546.7657992957988 25.66 0.27144 25.66 25.486 25.758 0 34 12 4 0 0 0 0.23158 1 13125 13125 20.454 6.5476 1 4539000 6179 9723 4206 4296 7166 7166 -0.028591613815024175 DPAKQLYEE 9 Unmodified _DPAKQLYEE_ 0 0 0 ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B MSMS AL20221201_MKP_PDAC_01 4 546.7667236328125 2 546.764029 1091.5135 NaN NaN NaN NaN NaN NaN NaN 30.309 1 26.812 26.312 27.312 -3.497 0 0 0 0.50124 1 17099 17099 15.847 0 1 6180 9723 4206 4296 7167 7167 -0.028591613815024175 DPALSLKEN 9 Unmodified _DPALSLKEN_ 0 0 0 nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74 nc|ENSG00000185252|Q16587-3|ZNF74 nc|ENSG00000185252|Q16587-3|ZNF74 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7625122070312 2 493.761289 985.508025 NaN NaN NaN NaN NaN NaN NaN 85.256 1 84.754 84.254 85.254 -0.5015 0 0 0 0.36554 1 46648 46648 21.747 1.293 1 6181 9352 4207 4297 7168 7168 0.014691598266722394 DPALWEKVT 9 Unmodified _DPALWEKVT_ 0 0 0 ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENST00000471323.1_1_19:36502301-36502343:-|nuORF;ENST00000486389.5_1_19:36501913-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5504455566406 3 353.52208 1057.54441 0.90794 0.00032098 3.9261 0.001388 4.8341 0.001709 353.52315135472975 49.757 0.21822 49.708 49.609 49.827 -0.048828 16 10 2 0 0 0 0.21473 1 26936 26936 2.4985 0.75621 1 1877500 6182 14257 4208 4298 7169 7169 0.017940367233904908 DPANIVHDF 9 Unmodified _DPANIVHDF_ 0 0 0 ENSG00000136156|ENST00000647800|ITM2B ENSG00000136156|ENST00000647800|ITM2B ENSG00000136156|ENST00000647800|ITM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2461547851562 2 514.245806 1026.47706 0.46997 0.00024168 -0.209 -0.00010748 0.26097 0.0001342 514.245616023286 53.152 0.45972 53.152 52.92 53.38 0 66 20 4 0 0 0 0.0085366 2 29409 29409;29518 90.135 50.185 1 46655000 6183 4796 4209 4299 7170;7171 7170 -0.03511993487563814 DPANIVHDF 9 Unmodified _DPANIVHDF_ 0 0 0 ENSG00000136156|ENST00000647800|ITM2B ENSG00000136156|ENST00000647800|ITM2B ENSG00000136156|ENST00000647800|ITM2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2464599609375 2 514.245806 1026.47706 0.90684 0.00046634 -0.16571 -8.5214E-05 0.74113 0.00038112 514.2457236547093 60.392 0.49518 54.278 54 54.495 -6.1147 61 25 3 0 0 0 0.0088231 2 38890 38760;38890 103.82 67.697 1 94795000 6184 4796 4209 4299 7172;7173 7173 -0.03511993487563814 DPAPGPDPF 9 Unmodified _DPAPGPDPF_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-16|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7087707519531 2 456.708525 911.402498 1.0291 0.00046998 -1.7817 -0.00081372 -0.75263 -0.00034373 456.70781960746626 51.111 0.16281 51.111 51.067 51.229 0 10 7 2 0 0 0 0.095405 1 28222 28222 34.102 17.16 1 2285200 6185 3295 4210 4300 7174 7174 -0.05674756298947159 DPAPLQHQM 9 Oxidation (M) _DPAPLQHQM(Oxidation (M))_ DPAPLQHQM(1) DPAPLQHQM(71) 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7454223632812 2 526.745116 1051.47568 0.75714 0.00039882 1.7258 0.00090906 2.4829 0.0013079 526.7451888556496 22.185 0.49126 19.45 19.274 19.765 -2.7348 42 26 2 0 0 0 0.013323 1 12043 12043 71.134 39.017 1 2505000 6186 7097 4211 4301 7175 7175 1220 -0.04799950847996115 DPAQVSVTF 9 Unmodified _DPAQVSVTF_ 0 0 0 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2424926757812 2 482.242732 962.470912 0.45394 0.00021891 -0.25355 -0.00012227 0.20039 9.6634E-05 482.2425406650085 57.998 0.41729 57.998 57.845 58.262 0 21 16 2 0 0 0 0.21643 1 32294 32294 21.537 3.3906 1 1111700 6187 10297 4212 4302 7176 7176 -0.011825117190710444 DPAQVSVTF 9 Unmodified _DPAQVSVTF_ 0 0 0 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 482.242732 962.470912 0.83741 0.00040384 3.6716 0.0017706 4.509 0.0021744 482.24529364822894 58.129 0.13931 58.068 58.016 58.156 -0.060719 0.035194 0.0033873 NaN 21.537 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 905130 6188 10297 4212 4302 -0.011825117190710444 DPARIQLIF 9 Unmodified _DPARIQLIF_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.811279296875 2 536.811116 1071.60768 0.39575 0.00021244 0.5667 0.00030421 0.96245 0.00051665 536.811362622218 79.126 0.36286 78.64 78.461 78.824 -0.48596 22 15 2 0 0 0 0.4887 1 43387 43387 8.1555 1.4324 1 1121700 6189 1171 4213 4303 7177 7177 0.07474022231281197 DPARIQLIF 9 Unmodified _DPARIQLIF_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8106689453125 2 536.811116 1071.60768 0.39019 0.00020946 0.046445 2.4932E-05 0.43664 0.00023439 536.811167832269 78.56 0.28705 78.612 78.49 78.777 0.052452 19 11 2 0 0 0 0.078314 1 43412 43412 38.176 20.029 1 1971300 6190 1171 4213 4303 7178 7178 0.07474022231281197 DPARIQLIF 9 Unmodified _DPARIQLIF_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.811116 1071.60768 0.39575 0.00021244 0.5667 0.00030421 0.96245 0.00051665 536.811362622218 79.126 0.36286 78.64 78.461 78.824 -0.48596 0.014081 0.00019024 NaN 38.176 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1121700 6191 1171 4213 4303 0.07474022231281197 DPARSCRHL 9 Unmodified _DPARSCRHL_ 0 0 0 REV__ENST00000482818.1_1_22:29725562-29725973:-|nuORF REV__ENST00000482818.1_1_22:29725562-29725973:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7405395507812 2 527.764175 1053.5138 0.49574 0.00026163 -0.75901 -0.00040058 -0.26327 -0.00013895 527.7638176479068 66.12 0.16094 66.12 66.014 66.175 0 10 7 2 0 0 0 0.19205 1 36912 36912 10.074 0 1 852820 + 6192 27729 4214 4304 7179 7179 -0.01082020142644069 DPASPGLF 8 Unmodified _DPASPGLF_ 0 0 0 ENST00000549685.5_1_12:69753653-69755108:+|nuORF;ENST00000552949.1_1_12:69753653-69756720:+|nuORF ENST00000549685.5_1_12:69753653-69755108:+|nuORF ENST00000549685.5_1_12:69753653-69755108:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.3990478515625 1 803.393396 802.386119 -0.025425 -2.0426E-05 0.051461 4.1344E-05 0.026036 2.0918E-05 803.3940951502866 62.907 0.41782 62.907 62.655 63.073 0 36 17 3 0 0 0 0.80676 1 35097 35097 2.5775 0 1 2804600 6193 15152 4215 4305 7180 7180 -0.022978374650278965 DPASRGHLCV 10 Unmodified _DPASRGHLCV_ 0 0 0 ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.1749877929688 3 352.174797 1053.50256 -0.4139 -0.00014576 1.4659 0.00051626 1.052 0.0003705 352.175197986403 35.386 0.54834 35.163 34.762 35.31 -0.2224 66 24 5 0 0 0 0.54684 1 18584 18584 8.4443 0.53415 1 57342000 6194 14866 4216 4306 7181 7181 -0.02204842236778859 DPASRGHLCV 10 Unmodified _DPASRGHLCV_ 0 0 0 ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.17529296875 3 352.174797 1053.50256 -0.1196 -4.212E-05 1.0289 0.00036236 0.90933 0.00032024 352.1750585992586 35.13 0.23495 35.157 35.018 35.253 0.027401 34 10 4 0 0 0 0.54684 1 18523 18523 8.4443 0 1 10098000 6195 14866 4216 4306 7182 7182 -0.02204842236778859 DPASRGHLCV 10 Unmodified _DPASRGHLCV_ 0 0 0 ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1754455566406 3 352.174797 1053.50256 1.4401 0.00050717 0.70661 0.00024885 2.1467 0.00075602 352.17497859206674 39.599 0.638 35.148 34.782 35.42 -4.4509 90 39 4 0 0 0 0.54684 1 23553 23553 8.4443 0.28878 1 64182000 6196 14866 4216 4306 7183 7183 -0.02204842236778859 DPAWLCCYYF 10 Unmodified _DPAWLCCYYF_ 0 0 0 REV__ENST00000463101.1_1_22:24579934-24582448:+|nuORF REV__ENST00000463101.1_1_22:24579934-24582448:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.76123046875 2 640.759378 1279.5042 NaN NaN NaN NaN NaN NaN NaN 78.389 1 78.389 77.889 78.889 0 0 0 0 0.9997 1 43563 43563 1.6526 1.0511 1 + 6197 17998 4217 4307 7184 7184 -0.12436969263080755 DPCYDWEV 8 Unmodified _DPCYDWEV_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-4|HEPH REV__nc|ENSG00000089472|Q9BQS7-4|HEPH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2474365234375 2 513.6973 1025.38005 0.45992 0.00023626 0.74271 0.00038153 1.2026 0.00061778 513.6977967780552 82.955 0.34941 82.458 82.263 82.613 -0.49751 27 14 2 0 0 0 8.7369 1 45449 45449 5.2307 0.47466 1 1116000 + 6198 17841 4218 4308 7185 7185 -0.13162723758887296 DPDAANYNDI 10 Unmodified _DPDAANYNDI_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.7900390625 2 554.233093 1106.45163 1.2708 0.0007043 -0.54703 -0.00030318 0.72373 0.00040112 554.2328458308082 37.566 0.47948 33.283 32.908 33.387 -4.2835 40 28 2 0 0 0 0.22941 1 22092 22092 5.7319 1.4026 1 4903200 6199 8926 4219 4309 7186 7186 -0.0973351280067618 DPDATSLKY 9 Unmodified _DPDATSLKY_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L ADAM15-CHD1L|1|fusion;nc|ENSG00000131778|Q86WJ1-3|CHD1L ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2455444335938 2 505.245472 1008.47639 -0.19428 -9.8157E-05 0.7722 0.00039015 0.57793 0.000292 505.24610125499265 33.125 0.51562 33.125 32.87 33.386 0 34 25 2 0 0 0 0.029718 1 17440 17440 55.503 32.354 1 2727000 6200 9;4349 4220 4310 7187 7187 -0.027508329272677656 DPDDDEFHGQ 10 Unmodified _DPDDDEFHGQ_ 0 0 0 REV__ENSG00000141858|ENST00000533683|SAMD1 REV__ENSG00000141858|ENST00000533683|SAMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1470642089844 3 392.14763 1173.42106 0.27708 0.00010866 -3.7776 -0.0014814 -3.5005 -0.0013727 392.1470807707395 59.685 0.39537 59.685 59.443 59.839 0 65 17 5 0 0 0 0.69377 1 33215 33215 1.7423 0 1 9319600 + 6201 20552 4221 4311 7188 7188 -0.1587129118570374 DPDDLDFSNL 10 Unmodified _DPDDLDFSNL_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7489624023438 2 575.748576 1149.4826 0.33393 0.00019226 0.26159 0.00015061 0.59552 0.00034287 575.7492202250407 62.677 0.56718 62.677 62.529 63.096 0 61 24 4 0 0 0 0.67046 1 35029 35029 10.824 0 1 5367600 6202 7929 4222 4312 7189 7189 -0.0861635948640469 DPDEPSESTL 10 Unmodified _DPDEPSESTL_ 0 0 0 ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629|ENST00000265742|ANKIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.233642578125 2 545.232758 1088.45096 0.40632 0.00022154 0.34684 0.00018911 0.75316 0.00041065 545.2331387601233 50.087 0.39944 50.087 49.883 50.282 0 55 18 4 0 0 0 0.50944 1 27643 27643 15.847 1.0089 1 27981000 6203 258 4223 4313 7190 7190 -0.08972352240357395 DPDFMMDFI 9 Unmodified _DPDFMMDFI_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.48974609375 3 377.489283 1129.44602 0.42868 0.00016182 -0.10792 -4.074E-05 0.32075 0.00012108 377.48943298029764 36.81 0.39116 36.81 36.566 36.958 0 43 18 3 0 0 0 0.55144 1 19511 19511 2.4985 0.41248 1 3747700 6204 5656 4224 4314 7191 7191 -0.11352650908315809 DPDSGQAPPRS 11 Unmodified _DPDSGQAPPRS_ 0 0 0 ENST00000514734.5_1_5:74026495-74034184:-|nuORF ENST00000514734.5_1_5:74026495-74034184:-|nuORF ENST00000514734.5_1_5:74026495-74034184:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1127.68798828125 1 1126.51234 1125.50507 0.55373 0.00062378 -2.8479 -0.0032082 -2.2941 -0.0025844 1126.5083775497453 81.818 0.33189 81.323 81.139 81.471 -0.4952 29 12 3 0 0 0 0.73389 1 44716 44716 1.0715 0.38109 1 1229400 6205 14658 4225 4315 7192 7192 -0.05266715298148483 DPDSVPPID 9 Unmodified _DPDSVPPID_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4390258789062 1 954.441468 953.434192 -0.072592 -6.9285E-05 -0.53017 -0.00050602 -0.60276 -0.0005753 954.4402888096133 49.168 0.11105 49.168 49.083 49.194 0 5 4 2 0 0 0 0.55144 1 27033 27033 4.3292 0.38484 1 690950 6206 10885 4226 4316 7193 7193 -0.044388083356579955 DPDTASPIPF 10 Unmodified _DPDTASPIPF_ 0 0 0 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7169799804688 2 530.253297 1058.49204 -0.027487 -1.4575E-05 -0.58312 -0.0003092 -0.6106 -0.00032377 530.2528986965336 41.74 0.075779 41.74 41.709 41.785 0 5 3 2 0 0 0 0.23412 1 22535 22535 9.3831 7.5389 1 2681400 + 6207 23408 4227 4317 7194 7194 -0.03486546410226765 DPDVTNNSI 9 Unmodified _DPDVTNNSI_ 0 0 0 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 ENSG00000101542|ENST00000262717|CDH20 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.7438659667969 2 487.724904 973.435254 1.4047 0.00068509 3.4771 0.0016959 4.8818 0.002381 487.72657526321274 64.427 0.321 58.251 58.11 58.431 -6.1757 28 17 2 0 0 0 0.18521 1 41782 41782 11.64 6.4096 1 7307700 6208 1974 4228 4318 7195 7195 -0.052525939667361854 DPEATQFITF 10 Unmodified _DPEATQFITF_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2852172851562 2 584.779679 1167.5448 0.38056 0.00022254 0.54571 0.00031912 0.92627 0.00054166 584.7800293035529 86.484 0.34634 85.981 85.769 86.115 -0.50318 32 14 3 0 0 0 0.23227 1 47245 47245 10.824 2.2306 1 1599300 6209 9361 4229 4319 7196 7196 -0.03226588347456527 DPECVSSGYF 10 Unmodified _DPECVSSGYF_ 0 0 0 REV__ENSG00000183337|ENST00000378444|BCOR REV__ENSG00000183337|ENST00000378444|BCOR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7721557617188 2 552.221139 1102.42773 0.7 0.00038655 2.8034 0.0015481 3.5034 0.0019347 552.2233824227079 72.192 0.20059 71.716 71.572 71.772 -0.47609 15 8 3 0 0 0 0.23634 1 39464 39464 6.7232 2.7788 1 528210 + 6210 23340 4230 4320 7197 7197 -0.11939069558684423 DPEDVIRNAF 10 Unmodified _DPEDVIRNAF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2888793945312 2 588.288202 1174.56185 0.098965 5.822E-05 1.2238 0.00071997 1.3228 0.00077819 588.2887628079567 63.711 0.40982 63.711 63.52 63.93 0 28 16 2 0 0 0 0.077785 1 35537 35537 51.63 27.609 1 773040 6211 3386 4231 4321 7198 7198 -0.018446677416022794 DPEEALCWLSY 11 Carbamidomethyl (C) _DPEEALC(Carbamidomethyl (C))WLSY_ DPEEALC(1)WLSY DPEEALC(110)WLSY 0 1 0 ENST00000538962.7_1_9:114359649-114359685:-|nuORF ENST00000538962.7_1_9:114359649-114359685:-|nuORF ENST00000538962.7_1_9:114359649-114359685:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.801513671875 2 691.800285 1381.58602 0.49163 0.00034011 0.095628 6.6156E-05 0.58726 0.00040626 691.8008453726687 99.512 0.20467 93.337 93.243 93.448 -6.1757 26 12 3 0 0 0 9.0947E-09 1 66316 66316 110.67 91.418 1 33402000 6212 15013 4232 4322 7199 7199 992 -0.08951195370264031 DPEGGCCWNP 10 Unmodified _DPEGGCCWNP_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.1919555664062 2 539.191859 1076.36917 0.17065 9.2012E-05 0.2364 0.00012746 0.40705 0.00021948 539.1919144534415 64.923 0.47466 64.923 64.719 65.194 0 40 21 2 0 0 0 0.69377 1 36324 36324 3.5965 3.5965 1 2347700 6213 4425 4233 4323 7200 7200 -0.16596449404823943 DPEGKITGEAF 11 Unmodified _DPEGKITGEAF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.33642578125 2 582.282586 1162.55062 -0.23891 -0.00013911 1.288 0.00074996 1.0491 0.00061085 582.2829232574301 40.78 0.11543 40.78 40.675 40.79 0 10 6 2 0 0 0 0.21929 1 21925 21925 55.249 24.612 1 5181800 6214 7918 4234 4324 7201 7201 -0.02415489835743756 DPEHTITIWRW 11 Unmodified _DPEHTITIWRW_ 0 0 0 ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF ENSG00000165521|ENST00000554922|EML5 ENSG00000165521|ENST00000554922|EML5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.5790405273438 3 485.245609 1452.715 0.23048 0.00011184 -3.1902 -0.001548 -2.9597 -0.0014362 485.2436166315778 23.739 0.30253 20.912 20.755 21.058 -2.8273 41 18 3 0 0 0 0.67892 1 12931 12931 6.2344 2.3884 1 7121100 6215 7354 4235 4325 7202 7202 0.006749473748186574 DPEIQVPYE 9 Unmodified _DPEIQVPYE_ 0 0 0 REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3 REV__nc|ENSG00000132640|Q9Y2F9-2|BTBD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3135986328125 2 545.258579 1088.50261 0.61698 0.00033641 4.3906 0.002394 5.0076 0.0027304 545.2602885680365 53.85 0.36635 53.85 53.685 54.051 0 34 16 3 0 0 0 0.19496 1 29832 29832 9.3831 5.4387 1 3813800 + 6216 19869 4236 4326 7203 7203 -0.03810563755791918 DPELRDWRRNY 11 Unmodified _DPELRDWRRNY_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.6892700195312 4 380.69047 1518.73277 0.011495 4.376E-06 -2.0953 -0.00079768 -2.0838 -0.0007933 380.9399752632938 29.409 0.43939 29.439 29.319 29.759 0.030106 41 21 3 0 0 0 0.73114 1 15383 15383 1.3296 0 1 13146000 6217 9332 4237 4327 7204 7204 -0.005843373702873578 DPEPFHSADR 10 Unmodified _DPEPFHSADR_ 0 0 0 REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7640380859375 2 585.762352 1169.51015 NaN NaN NaN NaN NaN NaN NaN 19.887 1 19.887 19.387 20.387 0 0 0 0 0.99388 1 9976 9976 1.3295 0.72803 1 + 6218 20733 4238 4328 7205 7205 -0.06782411435528957 DPERKLLRP 9 Unmodified _DPERKLLRP_ 0 0 0 REV__ENSG00000221869|ENST00000408965|CEBPD REV__ENSG00000221869|ENST00000408965|CEBPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2245178222656 3 375.224257 1122.65094 -0.056213 -2.1092E-05 0.80766 0.00030305 0.75145 0.00028196 375.2245360897258 33.004 0.29476 33.034 32.914 33.208 0.029747 28 12 3 0 0 0 0.39143 1 17350 17350 12.873 3.1084 1 3400600 + 6219 24363 4239 4329 7206 7206 0.09452212008568495 DPERKLLRP 9 Unmodified _DPERKLLRP_ 0 0 0 REV__ENSG00000221869|ENST00000408965|CEBPD REV__ENSG00000221869|ENST00000408965|CEBPD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.224257 1122.65094 -0.60083 -0.00022544 0.1089 4.0863E-05 -0.49192 -0.00018458 375.22442635796983 33.197 0.11432 33.197 33.109 33.223 0 0.098472 -0.00072026 NaN 12.873 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 982750 + 6220 24363 4239 4329 0.09452212008568495 DPERKLLRP 9 Unmodified _DPERKLLRP_ 0 0 0 REV__ENSG00000221869|ENST00000408965|CEBPD REV__ENSG00000221869|ENST00000408965|CEBPD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 375.224257 1122.65094 -0.25285 -9.4875E-05 0.99289 0.00037255 0.74004 0.00027768 375.2248107488724 33.225 0.23433 33.066 32.936 33.171 -0.15918 -0.032987 0.00027482 NaN 12.873 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2352200 + 6221 24363 4239 4329 0.09452212008568495 DPESTVAVAF 10 Unmodified _DPESTVAVAF_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2525634765625 2 518.253297 1034.49204 0.27715 0.00014364 -3.264 -0.0016916 -2.9868 -0.0015479 518.250878907217 62.544 0.5852 62.544 62.4 62.985 0 45 28 3 0 0 0 0.04925 2 34935 34821;34935 58.679 26.373 1 6581300 6222 7513 4240 4330 7207;7208 7208 -0.023825464102628757 DPESTVAVAF 10 Unmodified _DPESTVAVAF_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 518.2542724609375 2 518.253297 1034.49204 NaN NaN NaN NaN NaN NaN NaN 71.429 1 65.253 64.753 65.753 -6.1757 0 0 0 0.01817 1 46685 46685 78.149 49.663 1 6223 7513 4240 4330 7209 7209 -0.023825464102628757 DPESVKIIF 9 Unmodified _DPESVKIIF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2901611328125 2 524.289682 1046.56481 0.67041 0.00035149 -0.21369 -0.00011203 0.45673 0.00023946 524.2893985171123 66.994 0.25395 66.994 66.878 67.132 0 15 11 2 0 0 0 0.095405 1 37363 37363 34.102 17.16 1 1121500 6224 2945 4241 4331 7210 7210 0.04339207383191024 DPESVKIIF 9 Unmodified _DPESVKIIF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.289682 1046.56481 0.38791 0.00020338 -0.68167 -0.00035739 -0.29376 -0.00015401 524.2893805388879 67.465 0.20822 66.982 66.866 67.075 -0.48218 -0.0058045 -0.00031751 NaN 34.102 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 721010 6225 2945 4241 4331 0.04339207383191024 DPFARVFFI 9 Unmodified _DPFARVFFI_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2701416015625 2 556.300384 1110.58622 0.16381 9.1129E-05 -1.4176 -0.00078859 -1.2538 -0.00069747 556.8026222198364 69.925 0.10926 69.446 69.363 69.472 -0.47903 6 4 2 0 0 0 0.19613 1 38192 38192 12.532 0.89125 1 797500 6226 3090 4242 4332 7211 7211 0.03534637202551494 DPFFDMHMM 9 3 Oxidation (M) _DPFFDM(Oxidation (M))HM(Oxidation (M))M(Oxidation (M))_ DPFFDM(1)HM(1)M(1) DPFFDM(78)HM(78)M(78) 0 0 3 nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE nc|ENSG00000197713|Q96AT9-4|RPE nc|ENSG00000197713|Q96AT9-4|RPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7161254882812 2 609.716852 1217.41915 0.0052618 3.2082E-06 -1.144 -0.00069754 -1.1388 -0.00069433 609.716687967935 42.097 0.6828 42.097 41.785 42.468 0 122 34 4 0 0 0 0.010877 3 22864 22633;22747;22864 77.984 68.601 1 31819000 6227 9992 4243 4333 7212;7213;7214 7214 1617;1618;1619 -0.1808608279118289 DPFFDMHMM 9 3 Oxidation (M) _DPFFDM(Oxidation (M))HM(Oxidation (M))M(Oxidation (M))_ DPFFDM(1)HM(1)M(1) DPFFDM(51)HM(51)M(51) 0 0 3 nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE nc|ENSG00000197713|Q96AT9-4|RPE nc|ENSG00000197713|Q96AT9-4|RPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.7177124023438 2 609.716852 1217.41915 0.87058 0.00053081 0.40471 0.00024676 1.2753 0.00077757 609.7170491089205 47.939 0.58633 42.705 42.386 42.973 -5.2339 49 35 2 0 0 0 0.038285 2 29911 29768;29911 50.855 45.123 1 13653000 6228 9992 4243 4333 7215;7216 7216 1617;1618;1619 -0.1808608279118289 DPFFDMHMM 9 Unmodified _DPFFDMHMM_ 0 0 0 nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE nc|ENSG00000197713|Q96AT9-4|RPE nc|ENSG00000197713|Q96AT9-4|RPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2259521484375 2 585.724481 1169.43441 0.48391 0.00028344 0.021943 1.2853E-05 0.50586 0.00029629 586.2258264057133 92.774 0.082458 86.599 86.56 86.642 -6.1757 6 4 2 0 0 0 0.047196 1 61370 61370 46.021 33.78 1 23867000 6229 9992 4243 4334 7217 7217 -0.1435317120333366 DPFFDMHMM 9 2 Oxidation (M) _DPFFDM(Oxidation (M))HM(Oxidation (M))M_ DPFFDM(0.985)HM(0.507)M(0.507) DPFFDM(15)HM(0)M(0) 0 0 2 nc|ENSG00000197713|Q96AT9-4|RPE;ENSG00000235376|ENST00000441178|RPEL1;ENSG00000197713|ENST00000359429|RPE nc|ENSG00000197713|Q96AT9-4|RPE nc|ENSG00000197713|Q96AT9-4|RPE MSMS AL20221201_MKP_PDAC_01 4 601.7203369140625 2 601.719395 1201.42424 NaN NaN NaN NaN NaN NaN NaN 59.458 1 53.344 52.844 53.844 -6.1147 0 0 0 0.10545 1 38180 38180 42.095 29.854 3 6230 9992 4243 4335 7218 7218 1617;1618;1619 -0.1684177892855132 DPFGHSPTM 9 Oxidation (M) _DPFGHSPTM(Oxidation (M))_ DPFGHSPTM(1) DPFGHSPTM(92) 0 0 1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7106323242188 2 502.710742 1003.40693 -0.1038 -5.2183E-05 -0.20385 -0.00010248 -0.30766 -0.00015466 502.7105709672712 25.841 0.26878 25.841 25.717 25.986 0 26 12 3 0 0 0 0.0082661 1 13260 13260 92.491 67.818 1 2072600 6231 2929 4244 4336 7219 7219 506 -0.09463615147694782 DPFGHSPTM 9 Unmodified _DPFGHSPTM_ 0 0 0 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MSMS AL20221201_MKP_PDAC_01 4 494.7129821777344 2 494.713285 987.412016 NaN NaN NaN NaN NaN NaN NaN 43.365 1 38.6 38.1 39.1 -4.7648 0 0 0 0.022863 1 26331 26331 74.929 55.49 1 6232 2929 4244 4337 7220 7220 -0.0821931128508595 DPFGRPTSF 9 Unmodified _DPFGRPTSF_ 0 0 0 nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS nc|ENSG00000156860|Q9HAH7|FBRS nc|ENSG00000156860|Q9HAH7|FBRS MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.249267578125 2 512.248349 1022.48214 1.1055 0.0005663 1.629 0.00083446 2.7345 0.0014008 512.2492256580817 54.288 0.34444 48.423 48.211 48.556 -5.8653 30 20 2 0 0 0 0.024189 1 34395 34395 59.368 15.51 1 12433000 6233 6485 4245 4338 7221 7221 -0.02819689624948296 DPFGTSVNY 9 Unmodified _DPFGTSVNY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2250671386719 2 500.224539 998.434526 0.92897 0.0004647 0.43257 0.00021638 1.3615 0.00068108 500.22470177514657 51.34 0.35015 51.34 51.15 51.5 0 38 15 3 0 0 0 0.012148 1 28319 28319 74.423 36.449 1 17273000 6234 3586 4246 4339 7222 7222 -0.06475388615808697 DPFGTSVNY 9 Unmodified _DPFGTSVNY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.4413452148438 1 999.441802 998.434526 0.49416 0.00049388 0.61023 0.00060989 1.1044 0.0011038 999.442223628847 51.344 0.24611 51.344 51.208 51.454 0 18 10 2 0 0 0 0.008678 1 28324 28324 88.904 47.064 1 1970400 6235 3586 4246 4339 7223 7223 -0.06475388615808697 DPFGTSVNY 9 Unmodified _DPFGTSVNY_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 500.224539 998.434526 0.17921 8.9643E-05 0.58974 0.000295 0.76895 0.00038465 500.2248732245277 52.001 0.17523 51.568 51.494 51.669 -0.43367 0.11381 0.00013772 NaN 74.423 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1480600 6236 3586 4246 4339 -0.06475388615808697 DPFIDLNYM 9 Oxidation (M) _DPFIDLNYM(Oxidation (M))_ DPFIDLNYM(1) DPFIDLNYM(55) 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2560424804688 2 572.254982 1142.49541 0.50234 0.00028747 -0.67585 -0.00038676 -0.17351 -9.9292E-05 572.2548433119598 72.62 0.68982 72.62 72.362 73.052 0 93 31 5 0 0 0 0.031062 2 40358 40358;40461 54.774 43.133 1 46335000 6237 2801 4247 4340 7224;7225 7224 485 -0.0701361962790088 DPFIDLNYM 9 Oxidation (M) _DPFIDLNYM(Oxidation (M))_ DPFIDLNYM(1) DPFIDLNYM(71) 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2557983398438 2 572.254982 1142.49541 0.84225 0.00048198 -0.69662 -0.00039864 0.14563 8.3339E-05 572.2547210498144 73.229 0.54561 72.753 72.473 73.018 -0.47588 79 24 4 0 0 0 0.013323 2 40036 40036;40134 71.134 59.493 1 19892000 6238 2801 4247 4340 7226;7227 7226 485 -0.0701361962790088 DPFIDLNYM 9 Oxidation (M) _DPFIDLNYM(Oxidation (M))_ DPFIDLNYM(1) DPFIDLNYM(85) 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2554321289062 2 572.254982 1142.49541 1.2459 0.00071298 -0.14594 -8.3514E-05 1.1 0.00062946 572.2549268143723 81.536 0.55908 75.361 75.078 75.637 -6.1757 96 31 4 0 0 0 0.0090948 3 53669 53411;53533;53669 85.272 70.434 1 101620000 6239 2801 4247 4340 7228;7229;7230 7230 485 -0.0701361962790088 DPFIDLNYM 9 Oxidation (M) _DPFIDLNYM(Oxidation (M))_ DPFIDLNYM(1) DPFIDLNYM(210) 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 1143.642700195312 1 1143.50269 1142.49541 1.0793 0.0012342 0.021495 2.4579E-05 1.1008 0.0012588 1143.5021915392233 81.493 0.25223 75.317 75.21 75.462 -6.1757 15 13 2 0 0 0 1.9533E-28 1 53562 53562 206.75 178.26 1 6904400 6240 2801 4247 4340 7231 7231 485 -0.0701361962790088 DPFIDLNYM 9 Unmodified _DPFIDLNYM_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.25830078125 2 564.257525 1126.5005 0.29927 0.00016887 1.5588 0.00087955 1.858 0.0010484 564.2583336853108 88.684 0.39001 88.684 88.484 88.874 0 33 20 2 0 0 0 0.32871 1 49032 49032 15.847 5.0233 1 871380 6241 2801 4247 4341 7232 7232 -0.05769315765269312 DPFIDLNYM 9 Unmodified _DPFIDLNYM_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.7743530273438 2 564.257525 1126.5005 1.5503 0.00087475 0.27361 0.00015439 1.8239 0.0010291 564.2577318518491 98.067 0.58136 91.891 91.64 92.221 -6.1757 103 37 4 0 0 0 0.15672 1 65201 65201 20.454 5.6154 1 92823000 6242 2801 4247 4341 7233 7233 -0.05769315765269312 DPFKDIILY 9 Unmodified _DPFKDIILY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.305419921875 2 562.305332 1122.59611 0.33253 0.00018698 0.62139 0.00034941 0.95392 0.00053639 562.3055973199375 79.216 0.73103 79.216 79.021 79.752 0 105 31 5 0 0 0 0.014417 4 44038 43935;43940;44038;44140 69.105 31.131 1 59723000 6243 1340 4248 4342 7234;7235;7236;7237 7236 0.03971780417282389 DPFKDIILY 9 Unmodified _DPFKDIILY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3057250976562 2 562.305332 1122.59611 0.77266 0.00043447 -0.30299 -0.00017037 0.46967 0.0002641 562.3050913105179 79.215 0.53285 79.27 78.962 79.495 0.05497 61 20 4 0 0 0 0.010611 2 43785 43673;43785 78.728 40.754 1 61647000 6244 1340 4248 4342 7238;7239 7239 0.03971780417282389 DPFKDIILY 9 Unmodified _DPFKDIILY_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.30615234375 2 562.305332 1122.59611 0.47485 0.00026701 0.32917 0.00018509 0.80401 0.0004521 562.305467124128 93.013 1.2801 86.837 86.115 87.395 -6.1757 311 85 5 0 0 0 0.023481 5 61268 61268;61388;61521;61651;61781 60.074 22.1 1 1041899999.9999999 6245 1340 4248 4342 7240;7241;7242;7243;7244 7240 0.03971780417282389 DPFKHFVGM 9 Oxidation (M) _DPFKHFVGM(Oxidation (M))_ DPFKHFVGM(1) DPFKHFVGM(69) 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2610473632812 2 547.260402 1092.50625 0.31436 0.00017204 0.58072 0.00031781 0.89508 0.00048984 547.2607808713994 40.273 0.35027 39.976 39.804 40.154 -0.29716 57 16 5 0 0 0 0.014417 1 21261 21261 69.105 45.956 1 21567000 6246 3901 4249 4343 7245 7245 697 -0.03630172462931114 DPFKHFVGM 9 Oxidation (M) _DPFKHFVGM(Oxidation (M))_ DPFKHFVGM(1) DPFKHFVGM(110) 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.260009765625 2 547.260402 1092.50625 0.3677 0.00020123 0.014717 8.0541E-06 0.38242 0.00020928 547.2604623360704 39.959 0.37965 39.964 39.748 40.128 0.0050583 50 17 4 0 0 0 0.0074135 2 21330 21222;21330 110.67 80.45 1 17993000 6247 3901 4249 4343 7246;7247 7247 697 -0.03630172462931114 DPFKHFVGM 9 Oxidation (M) _DPFKHFVGM(Oxidation (M))_ DPFKHFVGM(1) DPFKHFVGM(89) 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2603149414062 2 547.260402 1092.50625 0.36686 0.00020077 0.33523 0.00018346 0.70209 0.00038422 547.2606213347864 45.397 0.42849 40.442 40.269 40.698 -4.9549 66 29 3 0 0 0 0.0086209 2 28020 27853;28020 89.401 66.252 1 51471000 6248 3901 4249 4343 7248;7249 7249 697 -0.03630172462931114 DPFKHFVGM 9 Unmodified _DPFKHFVGM_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2627563476562 2 539.262945 1076.51134 0.31976 0.00017244 0.50756 0.00027371 0.82733 0.00044615 539.2633256901006 51.987 0.31575 51.928 51.751 52.067 -0.058918 36 14 3 0 0 0 0.0087224 1 28115 28115 107.19 89.052 1 12729000 6249 3901 4249 4344 7250 7250 -0.02385868600322283 DPFKHFVGM 9 Unmodified _DPFKHFVGM_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.26318359375 2 539.262945 1076.51134 0.12246 6.6038E-05 -0.84788 -0.00045723 -0.72542 -0.00039119 539.2628715501112 58.088 0.49149 52.061 51.835 52.327 -6.0275 70 26 4 0 0 0 0.0082981 1 37174 37174 85.642 62.493 1 100910000 6250 3901 4249 4344 7251 7251 -0.02385868600322283 DPFKHFVGM 9 Unmodified _DPFKHFVGM_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN nc|ENSG00000125868|P60981-2|DSTN nc|ENSG00000125868|P60981-2|DSTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8451843261719 3 359.844389 1076.51134 0.9382 0.00033761 0.32914 0.00011844 1.2673 0.00045604 359.8445559847413 58.06 0.47061 52.032 51.835 52.306 -6.0275 43 25 3 0 0 0 0.2546 1 37192 37192 19.362 11.206 1 39841000 6251 3901 4249 4344 7252 7252 -0.02385868600322283 DPFKNTCIY 9 Unmodified _DPFKNTCIY_ 0 0 0 ENST00000511393.4_1_4:186321154-186321376:+|nuORF ENST00000511393.4_1_4:186321154-186321376:+|nuORF ENST00000511393.4_1_4:186321154-186321376:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2599487304688 2 550.757692 1099.50083 0.47708 0.00026275 -0.47088 -0.00025934 0.0061914 3.41E-06 551.2593322105066 92.884 0.47076 92.427 92.189 92.66 -0.4574 88 24 5 0 0 0 0.48152 1 50754 50754 8.5933 0 1 8127600 6252 14608 4250 4345 7253 7253 -0.04493896045414658 DPFLSEKSVSM 11 Oxidation (M) _DPFLSEKSVSM(Oxidation (M))_ DPFLSEKSVSM(1) DPFLSEKSVSM(41) 0 0 1 nc|ENSG00000182158|Q70SY1-3|CREB3L2;nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.297607421875 2 628.297378 1254.5802 NaN NaN NaN NaN NaN NaN NaN 40.245 1 40.245 39.745 40.745 0 0 0 0 0.17693 1 21619 21619 40.725 26.819 1 6253 9024 4251 4346 7254 7254 1513 -0.03690293881936668 DPFNNLVL 8 Unmodified _DPFNNLVL_ 0 0 0 REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 931.4915771484375 1 931.488359 930.481082 0.64934 0.00060485 0.52977 0.00049348 1.1791 0.0010983 931.4890627304796 74.058 0.22772 73.582 73.487 73.714 -0.47588 14 9 2 0 0 0 0.56356 2 40526 40526;40563 29.082 1.4528 1 465760 + 6254 25210 4252 4347 7255;7256 7255 0.013060960061352489 DPFPAAIIL 9 Unmodified _DPFPAAIIL_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 956.551513671875 1 956.545145 955.537869 3.464 0.0033135 -2.8635 -0.0027391 0.60048 0.00057438 956.5427001712269 99.675 0.11213 99.639 99.554 99.666 -0.036301 6 3 2 0 0 0 0.031062 1 55356 55356 54.774 10.367 1 3994000 6255 16367 4253 4348 7257 7257 0.058321435626680795 DPFPAAIIL 9 Unmodified _DPFPAAIIL_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7766723632812 2 478.776211 955.537869 1.1358 0.00054377 0.55245 0.0002645 1.6882 0.00080827 478.7762257963065 101.26 0.20628 95.087 94.956 95.163 -6.1757 32 12 4 0 0 0 0.07916 1 67868 67868 37.974 18.535 1 117440000 6256 16367 4253 4348 7258 7258 0.058321435626680795 DPFPAAIIL 9 Unmodified _DPFPAAIIL_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.5449829101562 1 956.545145 955.537869 0.91017 0.00087062 -0.62247 -0.00059543 0.28769 0.00027519 956.5440305889323 101.25 0.18861 95.077 94.974 95.163 -6.1757 34 11 4 0 0 0 0.019303 1 67873 67873 64.236 28.192 1 109020000 6257 16367 4253 4348 7259 7259 0.058321435626680795 DPFPDHVVF 9 Unmodified _DPFPDHVVF_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7576293945312 2 536.758549 1071.50255 -0.11449 -6.1453E-05 -0.13211 -7.0909E-05 -0.24659 -0.00013236 536.7582876042188 71.363 0.55788 71.363 71.041 71.599 0 72 26 4 0 0 0 0.0090851 3 39805 39656;39705;39805 85.357 53.051 1 7958600 6258 6002 4254 4349 7260;7261;7262 7262 -0.030345189651598048 DPFPDHVVF 9 Unmodified _DPFPDHVVF_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.260498046875 2 536.758549 1071.50255 0.45845 0.00024607 0.69785 0.00037457 1.1563 0.00062065 536.7588751402824 71.858 0.53847 71.381 71.192 71.73 -0.47609 40 21 3 0 0 0 0.042911 1 39300 39300 48.346 27.892 1 3897100 6259 6002 4254 4349 7263 7263 -0.030345189651598048 DPFPDHVVF 9 Unmodified _DPFPDHVVF_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7581176757812 2 536.758549 1071.50255 0.69425 0.00037264 -0.49116 -0.00026364 0.20309 0.00010901 536.7580088613145 78.888 0.54223 72.712 72.484 73.026 -6.1757 69 30 3 0 0 0 0.042911 1 51679 51679 48.346 29.089 1 22394000 6260 6002 4254 4349 7264 7264 -0.030345189651598048 DPFRDAVTL 9 Unmodified _DPFRDAVTL_ 0 0 0 nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.27001953125 2 517.269281 1032.52401 0.48945 0.00025318 0.24914 0.00012887 0.73859 0.00038205 517.2696419815015 57.979 0.50798 57.979 57.754 58.262 0 51 20 4 0 0 0 0.044296 1 32249 32249 47.594 11.467 1 14636000 6261 2188 4255 4350 7265 7265 0.00904866063569898 DPFRDAVTL 9 Unmodified _DPFRDAVTL_ 0 0 0 nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2697143554688 2 517.269281 1032.52401 0.19075 9.8671E-05 -0.36249 -0.00018751 -0.17174 -8.8836E-05 517.2694905169634 58.494 0.35312 58.003 57.839 58.193 -0.49079 42 16 4 0 0 0 0.029718 1 31796 31796 55.503 19.376 1 7065800 6262 2188 4255 4350 7266 7266 0.00904866063569898 DPFRDAVTL 9 Unmodified _DPFRDAVTL_ 0 0 0 nc|ENSG00000104228|Q9UPQ4-2|TRIM35;ENSG00000104228|ENST00000305364|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2679443359375 2 517.269281 1032.52401 0.25066 0.00012966 0.44922 0.00023237 0.69989 0.00036203 517.2693611965574 65.487 0.52219 59.312 59.072 59.594 -6.1757 46 29 2 0 0 0 0.044296 1 42471 42471 47.594 11.467 1 40690000 6263 2188 4255 4350 7267 7267 0.00904866063569898 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1888732910156 3 367.189212 1098.54581 0.23538 8.643E-05 -0.037748 -1.3861E-05 0.19763 7.2569E-05 367.18916247116425 51.614 0.52177 51.614 51.302 51.823 0 62 23 4 0 0 0 0.036857 2 28450 28450;28576 40.725 14.704 1 35715000 6264 4869 4256 4351 7268;7269 7268 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7492065429688 2 550.28018 1098.54581 0.50255 0.00027654 -1.0869 -0.00059808 -0.58431 -0.00032153 550.2790576068177 51.621 0.36553 51.621 51.412 51.777 0 30 16 3 0 0 0 0.20207 1 28589 28589 11.495 1.3441 1 11766000 6265 4869 4256 4351 7270 7270 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.1890869140625 3 367.189212 1098.54581 0.48068 0.0001765 -0.066715 -2.4497E-05 0.41396 0.000152 367.1891609274073 52.101 0.45042 51.667 51.474 51.925 -0.43367 82 22 5 0 0 0 0.05483 2 28059 28059;28160 34.222 18.323 1 45415000 6266 4869 4256 4351 7271;7272 7271 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.280029296875 2 550.28018 1098.54581 0.52269 0.00028763 -0.75585 -0.00041593 -0.23315 -0.0001283 550.2795866777566 52.081 0.37753 51.647 51.494 51.871 -0.43367 54 18 4 0 0 0 0.0099157 2 28172 28061;28172 80.676 47.89 1 17988000 6267 4869 4256 4351 7273;7274 7274 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1895751953125 3 367.189212 1098.54581 1.5725 0.00057739 -0.41899 -0.00015385 1.1535 0.00042354 367.18897093813393 57.68 0.44624 51.652 51.372 51.819 -6.0275 65 24 4 0 0 0 0.010301 2 36920 36793;36920 64.927 32.889 1 148730000 6268 4869 4256 4351 7275;7276 7276 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2808837890625 2 550.28018 1098.54581 0.90095 0.00049578 -0.01538 -8.4631E-06 0.88557 0.00048731 550.2801754865019 57.673 0.36105 51.646 51.443 51.804 -6.0275 48 19 3 0 0 0 2.6516E-06 2 36959 36831;36959 155.95 95.303 1 77925000 6269 4869 4256 4351 7277;7278 7278 0.0004767081213685742 DPFRDLHSL 9 Unmodified _DPFRDLHSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 367.189212 1098.54581 0.071425 2.6227E-05 -0.47955 -0.00017608 -0.40812 -0.00014986 367.1888139070488 51.78 0.28297 51.722 51.592 51.875 -0.058914 0.057709 -0.00030567 NaN 64.927 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1292800 6270 4869 4256 4351 0.0004767081213685742 DPFRDWYPH 9 Unmodified _DPFRDWYPH_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5196228027344 3 411.520962 1231.54106 0.55715 0.00022928 -3.2963 -0.0013565 -2.7391 -0.0011272 411.5195286345161 27.965 0.21712 27.919 27.821 28.038 -0.04641 10 7 2 0 0 0 0.54816 1 14444 14444 4.5289 0.65253 1 2854100 6271 2406 4257 4352 7279 7279 -0.0654521333062803 DPFRFTTFY 9 Unmodified _DPFRFTTFY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2867431640625 2 597.284931 1192.55531 -0.073805 -4.4083E-05 1.4869 0.00088811 1.4131 0.00084403 597.2858645088235 78.558 0.19893 78.072 77.99 78.189 -0.48596 13 7 2 0 0 0 0.32871 1 43053 43053 15.847 4.2069 1 914150 6272 2613 4258 4353 7280 7280 -0.033265609023374054 DPFRFTTFY 9 Unmodified _DPFRFTTFY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2863159179688 2 597.284931 1192.55531 0.11711 6.9949E-05 0.63682 0.00038036 0.75393 0.00045031 597.2854505418285 78.004 0.35965 78.056 77.89 78.249 0.052452 44 14 4 0 0 0 0.033587 2 43024 43024;43132 53.404 26.52 1 29895000 6273 2613 4258 4353 7281;7282 7281 -0.033265609023374054 DPFRFTTFY 9 Unmodified _DPFRFTTFY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2849731445312 2 597.284931 1192.55531 0.48109 0.00028735 1.7792 0.0010627 2.2603 0.00135 597.2851676704421 90.253 1.0697 84.077 83.67 84.74 -6.1757 107 62 2 0 0 0 0.040683 1 59601 59601 49.554 15.452 1 18003000 6274 2613 4258 4353 7283 7283 -0.033265609023374054 DPFSEGIMF 9 Oxidation (M) _DPFSEGIM(Oxidation (M))F_ DPFSEGIM(1)F DPFSEGIM(93)F 0 0 1 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7293090820312 2 529.7286 1057.44265 1.1788 0.00062445 -0.47191 -0.00024999 0.7069 0.00037446 529.7285315493663 86.28 0.41376 80.104 79.889 80.303 -6.1757 40 22 2 0 0 0 0.0082281 1 56804 56804 92.822 73.383 1 20866000 6275 3003 4259 4354 7284 7284 518 -0.08377577690680482 DPFSEGIMF 9 Unmodified _DPFSEGIMF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.73095703125 2 521.731143 1041.44773 1.3506 0.00070466 -0.19164 -9.9983E-05 1.159 0.00060467 521.7309426977679 98.049 0.2708 91.873 91.668 91.939 -6.1757 29 16 2 0 0 0 0.042911 1 64978 64978 48.346 31.404 1 16547000 6276 3003 4259 4355 7285 7285 -0.07133273828048914 DPFSTGIGF 9 Unmodified _DPFSTGIGF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.4383544921875 1 940.441074 939.433798 -0.7697 -0.00072386 0.63597 0.00059809 -0.13373 -0.00012577 940.4413382351016 77.594 0.24651 77.111 76.998 77.244 -0.4826 17 11 2 0 0 0 0.06187 1 42443 42443 42.095 11.87 1 1381900 6277 6085 4260 4356 7286 7286 -0.03834183264859803 DPFSTGIGF 9 Unmodified _DPFSTGIGF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MSMS AL20221201_MKP_PDAC_01 4 470.7248840332031 2 470.724175 939.433798 NaN NaN NaN NaN NaN NaN NaN 86.283 1 80.107 79.607 80.607 -6.1757 0 0 0 0.023279 1 56879 56879 74.423 38.379 1 6278 6085 4260 4356 7287 7287 -0.03834183264859803 DPFTGNSAY 9 Unmodified _DPFTGNSAY_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2101745605469 2 486.208889 970.403226 0.12149 5.9067E-05 0.5393 0.00026221 0.66078 0.00032128 486.20924663324115 43.4 0.24403 43.4 43.242 43.486 0 16 11 2 0 0 0 0.19127 1 23583 23583 24.021 4.5816 1 2080100 6279 4894 4261 4357 7288 7288 -0.08315961649907422 DPFTQPDQSTP 11 Unmodified _DPFTQPDQSTP_ 0 0 0 nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2 nc|ENSG00000153071|P98082-3|DAB2 nc|ENSG00000153071|P98082-3|DAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5198669433594 3 411.519175 1231.5357 -0.80456 -0.00033109 0.65846 0.00027097 -0.14609 -6.012E-05 411.51955852895804 27.961 0.59243 27.961 27.659 28.251 0 76 32 3 0 0 0 0.71618 1 14553 14553 2.4348 1.3633 1 5519500 6280 6235 4262 4358 7289 7289 -0.07080981703779798 DPFVDRIGY 9 Unmodified _DPFVDRIGY_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2697143554688 2 541.269281 1080.52401 0.96927 0.00052463 -0.12003 -6.4968E-05 0.84924 0.00045967 541.269125362262 54.507 0.38016 54.507 54.309 54.689 0 63 16 5 0 0 0 0.01958 2 30297 30198;30297 63.961 25.987 1 59659000 6281 1648 4263 4359 7290;7291 7291 -0.01303133936426093 DPFVDRIGY 9 Unmodified _DPFVDRIGY_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2686157226562 2 541.269281 1080.52401 0.10583 5.7284E-05 -0.21812 -0.00011806 -0.11229 -6.0779E-05 541.2690577825417 55.116 0.28741 54.638 54.509 54.796 -0.47798 35 13 3 0 0 0 0.011671 1 29882 29882 75.761 41.658 1 10024000 6282 1648 4263 4359 7292 7292 -0.01303133936426093 DPFVDRIGY 9 Unmodified _DPFVDRIGY_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7777709960938 2 541.269281 1080.52401 0.34352 0.00018594 1.9184 0.0010384 2.262 0.0012243 541.2701954057994 54.815 0.18052 54.748 54.644 54.824 -0.066936 11 8 2 0 0 0 0.19994 1 29815 29815 12.241 6.0349 1 1651000 6283 1648 4263 4359 7293 7293 -0.01303133936426093 DPFVDRIGY 9 Unmodified _DPFVDRIGY_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2689819335938 2 541.269281 1080.52401 0.42494 0.00023001 -1.3268 -0.00071813 -0.90181 -0.00048812 541.268248935542 61.987 0.4636 55.811 55.557 56.021 -6.1757 62 25 3 0 0 0 0.029718 1 40028 40028 55.503 24.866 1 144200000 6284 1648 4263 4359 7294 7294 -0.01303133936426093 DPFVDRIGYF 10 Unmodified _DPFVDRIGYF_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.8033447265625 2 614.803488 1227.59242 NaN NaN NaN NaN NaN NaN NaN 75.797 1 75.797 75.297 76.297 0 0 0 0 0.92103 1 42155 42155 11.495 2.7493 1 6285 1648 4264 4360 7295 7295 -0.012268893565760663 DPFVDRIGYF 10 Unmodified _DPFVDRIGYF_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.804443359375 2 614.803488 1227.59242 0.33649 0.00020688 1.6198 0.00099589 1.9563 0.0012028 614.8043933915051 76.261 0.27007 75.781 75.639 75.909 -0.47945 29 10 4 0 0 0 0.1989 2 41741 41688;41741 45.74 23.004 1 1696500 6286 1648 4264 4360 7296;7297 7297 -0.012268893565760663 DPFVGSDPF 9 Unmodified _DPFVGSDPF_ 0 0 0 ENSG00000085832|ENST00000371733|EPS15;nc|ENSG00000085832|P42566-2|EPS15 ENSG00000085832|ENST00000371733|EPS15 ENSG00000085832|ENST00000371733|EPS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7227478027344 2 490.721633 979.428712 0.20109 9.8681E-05 0.81928 0.00040204 1.0204 0.00050072 490.72197753803505 69.542 0.37522 69.542 69.4 69.775 0 36 17 3 0 0 0 0.095405 1 38724 38724 34.102 5.6156 1 1409400 6287 1420 4265 4361 7298 7298 -0.06182487127466629 DPGHWDRYHY 10 Unmodified _DPGHWDRYHY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.5303344726562 3 449.195138 1344.56358 0.58247 0.00026164 0.88866 0.00039918 1.4711 0.00066082 449.1954217972507 30.187 0.1775 30.106 30.027 30.205 -0.080429 12 6 2 0 0 0 0.35999 1 15673 15673 23.964 19.248 1 2876000 6288 5929 4266 4362 7299 7299 -0.09491613933005283 DPGHWDRYHY 10 Unmodified _DPGHWDRYHY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.1958923339844 3 449.195138 1344.56358 0.98754 0.0004436 -0.32315 -0.00014516 0.66439 0.00029844 449.1950019228938 33.317 0.19703 29.332 29.205 29.402 -3.9853 15 10 2 0 0 0 0.35999 1 19093 19093 23.964 16.118 1 9135400 6289 5929 4266 4362 7300 7300 -0.09491613933005283 DPGLSKMREYL 11 Unmodified _DPGLSKMREYL_ 0 0 0 REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8916320800781 3 436.892067 1307.65437 0.49376 0.00021572 -1.6106 -0.00070364 -1.1168 -0.00048792 437.2254377378315 57.05 0.23331 57.05 56.922 57.156 0 17 9 3 0 0 0 0.71503 1 31781 31781 2.8433 1.7335 1 884640 + 6290 29117 4267 4363 7301 7301 0.01285094000263598 DPGNIMCPF 9 Unmodified _DPGNIMCPF_ 0 0 0 ENST00000465076.5_1_10:75531037-75531319:+|nuORF ENST00000465076.5_1_10:75531037-75531319:+|nuORF ENST00000465076.5_1_10:75531037-75531319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2120666503906 2 497.212063 992.409574 0.23887 0.00011877 -0.99505 -0.00049475 -0.75618 -0.00037598 497.2114145592671 37.32 0.29179 37.32 37.117 37.409 0 24 14 2 0 0 0 0.30562 1 19774 19774 16.942 2.3606 1 2413300 6291 13728 4268 4364 7302 7302 -0.08693483014394587 DPGNSTSLRCP 11 Unmodified _DPGNSTSLRCP_ 0 0 0 REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF REV__ENST00000320623.9_1_16:69752155-69760649:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.7899169921875 2 573.764037 1145.51352 0.4422 0.00025372 1.1933 0.00068466 1.6355 0.00093838 573.764553598254 56.01 0.73488 50.088 49.525 50.26 -5.9211 68 43 2 0 0 0 0.28456 1 35559 35559 11.495 11.495 1 55429000 + 6292 25502 4269 4365 7303 7303 -0.05341484653149564 DPGPPSHAF 9 Unmodified _DPGPPSHAF_ 0 0 0 ENST00000528752.1_1_11:66241221-66243635:+|nuORF;nc|ENSG00000174516|Q8N2H9-3|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3 ENST00000528752.1_1_11:66241221-66243635:+|nuORF ENST00000528752.1_1_11:66241221-66243635:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7138671875 2 462.714142 923.413731 0.21427 9.9145E-05 0.39366 0.00018215 0.60793 0.0002813 462.7143292359979 31.775 0.43741 31.775 31.503 31.94 0 47 21 3 0 0 0 0.012148 2 16520 16520;16622 74.423 34.465 1 4025900 6293 8430 4270 4366 7304;7305 7304 -0.051039342048056824 DPGPPSHAF 9 Unmodified _DPGPPSHAF_ 0 0 0 ENST00000528752.1_1_11:66241221-66243635:+|nuORF;nc|ENSG00000174516|Q8N2H9-3|PELI3;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3 ENST00000528752.1_1_11:66241221-66243635:+|nuORF ENST00000528752.1_1_11:66241221-66243635:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7147521972656 2 462.714142 923.413731 1.0635 0.0004921 0.16491 7.6304E-05 1.2284 0.0005684 462.7143067124148 36.097 0.37458 31.904 31.678 32.053 -4.1928 45 22 3 0 0 0 0.0082281 1 21055 21055 92.822 52.865 1 7947200 6294 8430 4270 4366 7306 7306 -0.051039342048056824 DPGSSYLLQ 9 Unmodified _DPGSSYLLQ_ 0 0 0 ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR MSMS AL20221201_MKP_PDAC_01 4 490.240966796875 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 44.938 1 40.086 39.586 40.586 -4.852 0 0 0 0.34649 1 27498 27498 22.736 4.5899 1 6295 8682 4271 4367 7307 7307 -0.024268155817139814 DPGSVIVAF 9 Unmodified _DPGSVIVAF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7431640625 2 452.742368 903.470183 0.43167 0.00019543 1.0491 0.00047497 1.4808 0.00067041 452.7428410102233 75.763 0.37368 75.763 75.5 75.874 0 23 15 2 0 0 0 0.087258 1 42099 42099 36.044 23.513 1 628040 6296 3922;464 4272 4368 7308 7308 0.014586936318551125 DPGSVIVAF 9 Unmodified _DPGSVIVAF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 904.4802856445312 1 904.47746 903.470183 -0.28066 -0.00025385 2.8376 0.0025666 2.5569 0.0023127 904.4803042246923 76.287 0.33618 75.807 75.549 75.885 -0.47945 24 13 2 0 0 0 0.047196 1 41756 41756 46.021 20.622 1 969120 6297 3922;464 4272 4368 7309 7309 0.014586936318551125 DPGSVIVAF 9 Unmodified _DPGSVIVAF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 904.4779663085938 1 904.47746 903.470183 0.29481 0.00026665 -0.068108 -6.1602E-05 0.2267 0.00020504 904.4771574745254 84.501 0.28957 78.325 78.155 78.445 -6.1757 20 16 2 0 0 0 0.012148 2 55529 55529;55655 74.423 32.328 1 11431000 6298 3922;464 4272 4368 7310;7311 7310 0.014586936318551125 DPGSVIVAF 9 Unmodified _DPGSVIVAF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2465209960938 2 452.742368 903.470183 0.5255 0.00023792 2.0316 0.00091981 2.5571 0.0011577 452.74249276463274 84.501 0.32101 78.325 78.124 78.445 -6.1757 23 18 2 0 0 0 0.047196 1 55605 55605 46.021 13.715 1 9670200 6299 3922;464 4272 4368 7312 7312 0.014586936318551125 DPGSVIVAF 9 Unmodified _DPGSVIVAF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 904.47746 903.470183 0.066354 6.0016E-05 1.5192 0.0013741 1.5856 0.0014341 904.4786909166862 75.703 0.43578 75.703 75.5 75.936 0 -0.052066 -0.00010835 NaN 46.021 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2406900 6300 3922;464 4272 4368 0.014586936318551125 DPHAMFAEF 9 Unmodified _DPHAMFAEF_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7276000976562 2 532.728935 1063.44332 0.1131 6.0251E-05 -3.3118 -0.0017643 -3.1987 -0.001704 532.7281696501897 66.44 0.36441 65.956 65.807 66.171 -0.48323 36 17 3 0 0 0 0.23158 1 36262 36262 20.454 11.071 1 4033100 6301 4364 4273 4369 7313 7313 -0.08586738250983217 DPHAMFAEF 9 Unmodified _DPHAMFAEF_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7300415039062 2 532.728935 1063.44332 1.1076 0.00059004 -0.22471 -0.00011971 0.88287 0.00047033 532.7287652008614 71.552 0.50854 65.377 65.111 65.619 -6.1757 66 26 3 0 0 0 0.019303 4 46781 46669;46781;46911;46936 64.236 30.049 1 107380000 6302 4364 4273 4369 7314;7315;7316;7317 7315 -0.08586738250983217 DPHAMFAEF 9 Unmodified _DPHAMFAEF_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 532.728935 1063.44332 0.35507 0.00018916 -2.4181 -0.0012882 -2.063 -0.001099 532.7275482305039 65.908 0.31528 65.908 65.776 66.091 0 -0.024184 0.0003145 NaN 20.454 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2159000 6303 4364 4273 4369 -0.08586738250983217 DPHCLGEQEY 10 Unmodified _DPHCLGEQEY_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7428588867188 2 595.74277 1189.47099 -0.39406 -0.00023476 -0.59631 -0.00035525 -0.99037 -0.00059001 595.7423751110492 21.544 0.37307 21.544 21.381 21.754 0 71 51 2 0 0 0 0.69917 1 10949 10949 2.9952 0.69251 1 1243600 6304 6514 4274 4370 7318 7318 -0.11616879781399803 DPHQQIYTF 9 Unmodified _DPHQQIYTF_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7726440429688 2 574.772188 1147.52982 -0.3157 -0.00018146 1.2439 0.00071496 0.9282 0.00053351 574.7728982465367 48.584 0.41895 48.584 48.433 48.852 0 46 19 3 0 0 0 0.1685 1 26645 26645 26.268 18.358 1 8562700 6305 4609 4275 4371 7319 7319 -0.03804035424786889 DPHQQIYTF 9 Unmodified _DPHQQIYTF_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7723388671875 2 574.772188 1147.52982 0.60461 0.00034751 -1.5397 -0.00088501 -0.93514 -0.00053749 574.7721220126004 49.131 0.59638 48.759 48.446 49.043 -0.37172 102 29 5 0 0 0 0.21643 1 26272 26272 21.537 9.0054 1 60892000 6306 4609 4275 4371 7320 7320 -0.03804035424786889 DPHSLVYAL 9 Unmodified _DPHSLVYAL_ 0 0 0 REV__ENSG00000146233|ENST00000275016|CYP39A1 REV__ENSG00000146233|ENST00000275016|CYP39A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7671508789062 2 507.766374 1013.5182 -0.54579 -0.00027713 1.0623 0.00053941 0.51654 0.00026228 507.7671076698434 76.873 0.35108 76.393 76.276 76.627 -0.47945 18 15 2 0 0 0 0.5029 1 42090 42090 7.2892 0 1 395120 + 6307 20819 4276 4372 7321 7321 0.011977675518778597 DPHTVLVEF 9 Unmodified _DPHTVLVEF_ 0 0 0 ENSG00000167967|ENST00000301727|E4F1;ENST00000567111.1_1_16:2284613-2285107:+|nuORF;ENST00000569796.1_1_16:2284558-2285107:+|nuORF ENSG00000167967|ENST00000301727|E4F1 ENSG00000167967|ENST00000301727|E4F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7720336914062 2 528.771657 1055.52876 0.3073 0.00016249 1.8677 0.00098758 2.175 0.0011501 528.7719389957933 65.452 0.55438 65.452 65.117 65.671 0 57 21 4 0 0 0 0.0090851 1 36545 36545 85.357 43.262 1 25408000 6308 7687 4277 4373 7322 7322 0.00321750206330762 DPHTVLVEF 9 Unmodified _DPHTVLVEF_ 0 0 0 ENSG00000167967|ENST00000301727|E4F1;ENST00000567111.1_1_16:2284613-2285107:+|nuORF;ENST00000569796.1_1_16:2284558-2285107:+|nuORF ENSG00000167967|ENST00000301727|E4F1 ENSG00000167967|ENST00000301727|E4F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7711791992188 2 528.771657 1055.52876 -0.042907 -2.2688E-05 1.4051 0.00074298 1.3622 0.00072029 528.7715489420996 65.872 0.41602 65.388 65.169 65.585 -0.48428 37 17 3 0 0 0 0.012148 2 35956 35956;36053 74.423 47.539 1 5749000 6309 7687 4277 4373 7323;7324 7323 0.00321750206330762 DPHTVLVEF 9 Unmodified _DPHTVLVEF_ 0 0 0 ENSG00000167967|ENST00000301727|E4F1;ENST00000567111.1_1_16:2284613-2285107:+|nuORF;ENST00000569796.1_1_16:2284558-2285107:+|nuORF ENSG00000167967|ENST00000301727|E4F1 ENSG00000167967|ENST00000301727|E4F1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7722778320312 2 528.771657 1055.52876 1.1506 0.00060838 -0.4512 -0.00023858 0.69936 0.0003698 528.7714585519258 71.245 0.4977 65.07 64.826 65.324 -6.1757 40 24 2 0 0 0 0.0082281 2 46493 46493;46612 92.822 50.728 1 51503000 6310 7687 4277 4373 7325;7326 7325 0.00321750206330762 DPHTVTVSM 9 Oxidation (M) _DPHTVTVSM(Oxidation (M))_ DPHTVTVSM(1) DPHTVTVSM(67) 0 0 1 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7316284179688 2 501.731674 1001.4488 -0.089039 -4.4674E-05 -0.73959 -0.00037107 -0.82863 -0.00041575 501.7315983224964 20.485 0.45724 20.485 20.255 20.712 0 123 51 3 0 0 0 0.016184 1 10320 10320 67.344 6.9543 1 4984700 6311 2934;16128 4278 4374 7327 7327 507 -0.05187059459149168 DPHTVTVSM 9 Unmodified _DPHTVTVSM_ 0 0 0 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7354736328125 2 493.734217 985.453881 1.6457 0.00081252 0.28626 0.00014134 1.9319 0.00095386 493.73428188956944 41.742 0.4707 37.134 36.923 37.394 -4.6079 80 29 4 0 0 0 0.0083087 1 25033 25033 97.075 39.603 1 75431000 6312 2934;16128 4278 4375 7328 7328 -0.039427555965289685 DPHWKLALKR 10 Unmodified _DPHWKLALKR_ 0 0 0 REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF;REV__ENSG00000168724|ENST00000648817|DNAJC21 REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.9175415039062 3 421.915535 1262.72478 0.45196 0.00019069 1.7791 0.00075063 2.2311 0.00094132 421.91596877176994 11.958 0.055788 9.476 9.4271 9.4829 -2.482 6 5 2 0 0 0 0.71981 1 6025 6025 0.69767 0 1 791070 + 6313 28380;22335 4279 4376 7329 7329 0.10392180170856591 DPHYSFCYTF 10 Unmodified _DPHYSFCYTF_ 0 0 0 REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF REV__ENST00000370629.6_1_X:135730352-135730547:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.1752014160156 3 427.174463 1278.50156 0.24925 0.00010647 2.5374 0.0010839 2.7866 0.0011904 427.17545249056917 24.389 0.13918 24.41 24.32 24.459 0.021185 11 5 3 0 0 0 0.63089 1 12596 12596 9.544 5.6676 1 3813400 + 6314 26062 4280 4377 7330 7330 -0.12655101396376267 DPHYSFNHPF 10 Unmodified _DPHYSFNHPF_ 0 0 0 nc|ENSG00000129514|P55317-2|FOXA1;ENSG00000129514|ENST00000250448|FOXA1 nc|ENSG00000129514|P55317-2|FOXA1 nc|ENSG00000129514|P55317-2|FOXA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.7752075195312 2 630.775262 1259.53597 0.14389 9.0764E-05 0.35603 0.00022458 0.49993 0.00031534 630.7756400622261 93.506 0.26869 93.048 92.885 93.154 -0.4574 19 11 2 0 0 0 0.71123 1 51074 51074 1.6526 0.17072 1 194320 6315 4144 4281 4378 7331 7331 -0.08341517193252912 DPIDITQQ 8 Unmodified _DPIDITQQ_ 0 0 0 REV__ENST00000465232.5_1_10:124742932-124749886:+|nuORF REV__ENST00000465232.5_1_10:124742932-124749886:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2322082519531 2 465.232364 928.450176 NaN NaN NaN NaN NaN NaN NaN 27.723 1 27.753 27.253 28.253 0.029564 0 0 0 0.93587 1 14415 14415 13.508 4.1604 1 + 6316 23133 4282 4379 7332 7332 -0.016911020987663505 DPIDRIIEF 9 Unmodified _DPIDRIIEF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2986450195312 2 559.298039 1116.58152 0.39129 0.00021885 1.6236 0.00090806 2.0149 0.0011269 559.2987456917524 76.685 0.43036 76.685 76.443 76.874 0 44 17 3 0 0 0 0.091305 2 42668 42572;42668 37.075 13.054 1 3242900 6317 10934 4283 4380 7333;7334 7334 0.027897082691424657 DPIDRIIEF 9 Unmodified _DPIDRIIEF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2662963867188 2 559.298039 1116.58152 -0.22867 -0.0001279 0.34506 0.00019299 0.11638 6.5093E-05 559.2981453290582 77.159 0.33128 76.676 76.517 76.848 -0.4826 21 14 2 0 0 0 0.17716 1 42261 42261 22.658 22.658 1 884820 6318 10934 4283 4380 7335 7335 0.027897082691424657 DPIDSTYQY 9 Unmodified _DPIDSTYQY_ 0 0 0 ENSG00000151689|ENST00000392329|INPP1 ENSG00000151689|ENST00000392329|INPP1 ENSG00000151689|ENST00000392329|INPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2390747070312 2 551.240386 1100.46622 0.61379 0.00033835 -0.32098 -0.00017694 0.29281 0.00016141 551.2397625400112 43.165 0.29489 43.165 43.006 43.3 0 34 14 3 0 0 0 0.016184 1 23385 23385 67.344 46.89 1 19362000 6319 6136 4284 4381 7336 7336 -0.07999440652520207 DPIERLVSY 9 Unmodified _DPIERLVSY_ 0 0 0 ENSG00000153936|ENST00000370550|HS2ST1;nc|ENSG00000153936|Q7LGA3-2|HS2ST1;nc|ENSG00000153936|Q7LGA3-3|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2906494140625 2 546.290214 1090.56587 0.81056 0.0004428 -0.57048 -0.00031165 0.24008 0.00013115 546.289957362978 63.39 0.41208 57.215 57.094 57.506 -6.1757 37 23 2 0 0 0 0.033747 2 41080 40938;41080 53.317 23.476 1 36970000 6320 6284 4285 4382 7337;7338 7338 0.02421421752092101 DPIGAGALY 9 Unmodified _DPIGAGALY_ 0 0 0 ENSG00000198695|ENST00000361681|MT-ND6;ENST00000604233.1_1_5:99382524-99382602:+|nuORF ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7266540527344 2 438.726718 875.438883 NaN NaN NaN NaN NaN NaN NaN 54.883 1 54.883 54.383 55.383 0 0 0 0 0.53226 1 30479 30479 14.838 1.3304 1 6321 10125 4286 4383 7339 7339 -0.0038187940224361228 DPIGAGALYDY 11 Unmodified _DPIGAGALYDY_ 0 0 0 ENSG00000198695|ENST00000361681|MT-ND6;ENST00000604233.1_1_5:99382524-99382602:+|nuORF ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2734375 2 577.771854 1153.52915 0.26995 0.00015597 -0.19611 -0.00011331 0.07384 4.2663E-05 577.7717033584166 64.484 0.22159 64.484 64.365 64.587 0 18 10 2 0 0 0 0.42108 1 35975 35975 20.415 11.067 1 2125000 6322 10125 4287 4384 7340 7340 -0.04146874864477468 DPIGGHINNY 10 Unmodified _DPIGGHINNY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.261474609375 2 550.261988 1098.50942 -0.32937 -0.00018124 -0.6507 -0.00035805 -0.98007 -0.0005393 550.26135223291 34.41 0.29104 34.41 34.269 34.56 0 33 14 3 0 0 0 3.6552E-05 1 18099 18099 122.18 64.708 1 12301000 6323 8612 4288 4385 7341 7341 -0.035892060845753804 DPIHGHIEL 9 Unmodified _DPIHGHIEL_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7693481445312 2 515.769448 1029.52434 0.21471 0.00011074 0.41251 0.00021276 0.62722 0.0003235 515.7695784840868 43.334 0.32418 43.334 43.162 43.486 0 48 15 4 0 0 0 0.0082353 2 23474 23474;23591 96.111 65.474 1 32196000 6324 1951 4289 4386 7342;7343 7342 0.010762857834379247 DPIHGHIEL 9 Unmodified _DPIHGHIEL_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7656860351562 2 515.769448 1029.52434 0.73627 0.00037974 -3.0381 -0.001567 -2.3018 -0.0011872 515.7672455384223 48.255 0.42312 43.021 42.793 43.216 -5.2339 49 25 3 0 0 0 0.013041 1 29991 29991 71.922 37.82 1 41344000 6325 1951 4289 4386 7344 7344 0.010762857834379247 DPIHQWLSC 9 Unmodified _DPIHQWLSC_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000589953.1_1_19:36562547-36565998:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7557373046875 2 549.755484 1097.49641 0.4086 0.00022463 0.39658 0.00021802 0.80518 0.00044265 549.7555803785118 92.885 0.60205 92.428 92.169 92.771 -0.4574 55 30 2 0 0 0 0.49766 1 50795 50795 3.9444 0 1 18434000 6326 1167 4290 4387 7345 7345 -0.048433604683168596 DPIHTFDLY 9 Unmodified _DPIHTFDLY_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7692260742188 2 560.769114 1119.52368 0.56793 0.00031848 -0.012146 -6.8113E-06 0.55579 0.00031167 560.7688769799288 66.828 0.44658 66.828 66.594 67.04 0 58 20 4 0 0 0 0.016184 2 37339 37238;37339 67.344 44.195 1 14746000 6327 7661 4291 4388 7346;7347 7347 -0.0313055365627406 DPIHTFDLY 9 Unmodified _DPIHTFDLY_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.76904296875 2 560.769114 1119.52368 0.64794 0.00036334 0.67007 0.00037575 1.318 0.0007391 560.7694105855071 67.368 0.40337 66.886 66.716 67.119 -0.48218 43 17 4 0 0 0 0.016184 2 36866 36759;36866 67.344 44.195 1 4120700 6328 7661 4291 4388 7348;7349 7349 -0.0313055365627406 DPIHTFDLY 9 Unmodified _DPIHTFDLY_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;ENST00000464528.5_1_17:1639209-1640976:+|nuORF ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.82275390625 2 560.769114 1119.52368 1.0362 0.00058105 -0.041572 -2.3312E-05 0.99459 0.00055773 560.769538046393 73.38 0.51553 67.204 66.833 67.348 -6.1757 43 24 2 0 0 0 0.19384 1 48003 48003 21.747 21.747 1 12465000 6329 7661 4291 4388 7350 7350 -0.0313055365627406 DPIISLPNNLL 11 Unmodified _DPIISLPNNLL_ 0 0 0 REV__ENSG00000010322|ENST00000345716|NISCH REV__ENSG00000010322|ENST00000345716|NISCH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.2247009277344 3 403.567689 1207.68124 1.2456 0.00050269 0.36102 0.00014569 1.6066 0.00064838 403.56804148132227 20.235 0.26686 17.542 17.418 17.685 -2.693 26 19 2 0 0 0 0.29891 1 10713 10713 6.2344 5.4578 1 4184400 + 6330 17046 4292 4389 7351 7351 0.08570525883101254 DPILLVVGPP 10 Unmodified _DPILLVVGPP_ 0 0 0 REV__ENST00000487380.5_1_2:220074662-220075642:-|nuORF REV__ENST00000487380.5_1_2:220074662-220075642:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7759704589844 2 510.310418 1018.60628 0.32311 0.00016489 -0.040265 -2.0548E-05 0.28285 0.00014434 510.3099503991675 76.439 0.2704 76.439 76.271 76.541 0 17 10 2 0 0 0 0.22667 1 42432 42432 10.824 0 1 638870 + 6331 27824 4293 4390 7352 7352 0.09772388142528143 DPILYQHLF 9 Unmodified _DPILYQHLF_ 0 0 0 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2021179199219 3 382.537842 1144.5917 1.0306 0.00039423 2.6524 0.0010147 3.683 0.0014089 382.53880817568785 39.652 0.32725 35.201 35.058 35.385 -4.4509 35 20 2 0 0 0 0.39863 1 23611 23611 12.241 6.0488 1 16883000 6332 10157 4294 4391 7353 7353 0.025183159943708233 DPINERRVF 9 Unmodified _DPINERRVF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5402221679688 3 382.540245 1144.59891 -0.50438 -0.00019295 0.60946 0.00023314 0.10508 4.0198E-05 382.5404709402323 35.107 0.211 35.107 34.998 35.209 0 22 10 3 0 0 0 0.37578 1 18545 18545 13.615 6.1378 1 3485100 6333 10186 4295 4392 7354 7354 0.03239048594787164 DPINERRVF 9 Unmodified _DPINERRVF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.540245 1144.59891 -0.35813 -0.000137 0.33923 0.00012977 -0.0189 -7.2298E-06 382.54026574618103 35.249 0.21366 35.027 34.938 35.151 -0.2224 -0.039797 -0.00022184 NaN 13.615 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1324200 6334 10186 4295 4392 0.03239048594787164 DPINMEYTI 9 Unmodified _DPINMEYTI_ 0 0 0 ENSG00000163285|ENST00000295452|GABRG1 ENSG00000163285|ENST00000295452|GABRG1 ENSG00000163285|ENST00000295452|GABRG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2528686523438 2 548.254982 1094.49541 NaN NaN NaN NaN NaN NaN NaN 83.139 1 83.139 82.639 83.639 0 0 0 0 0.7453 1 46113 46113 7.9102 1.187 1 6335 6972 4296 4393 7355 7355 -0.04805619627882152 DPIPIVVKY 9 Unmodified _DPIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.3102416992188 2 522.310418 1042.60628 0.4053 0.00021169 0.21852 0.00011413 0.62382 0.00032583 522.3103888462584 64.073 0.28432 64.073 63.93 64.214 0 26 11 3 0 0 0 0.10734 1 35715 35715 32.305 14.171 1 2160700 6336 9484 4297 4394 7356 7356 0.08668388142518779 DPIPIVVKY 9 Unmodified _DPIPIVVKY_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.310791015625 2 522.310418 1042.60628 0.4456 0.00023274 -0.045153 -2.3584E-05 0.40045 0.00020916 522.3103414049413 64.664 0.36677 64.179 63.949 64.316 -0.48512 37 16 3 0 0 0 0.10734 1 35230 35230 32.305 10.559 1 5054500 6337 9484 4297 4394 7357 7357 0.08668388142518779 DPISIEMTL 9 Unmodified _DPISIEMTL_ 0 0 0 REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.760498046875 2 509.759901 1017.50525 0.33454 0.00017054 -0.22735 -0.0001159 0.10719 5.4641E-05 509.75996514634267 82.807 0.4325 82.807 82.585 83.018 0 69 19 5 0 0 0 0.2143 1 45857 45857 21.747 5.8995 1 11017000 + 6338 28314 4298 4395 7358 7358 -0.002804316225024195 DPISIEMTL 9 Unmodified _DPISIEMTL_ 0 0 0 REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7605590820312 2 509.759901 1017.50525 0.28485 0.00014521 0.49094 0.00025026 0.77579 0.00039547 509.7603116654299 83.296 0.40193 82.798 82.583 82.985 -0.49751 49 15 4 0 0 0 0.2143 2 45562 45562;45654 21.747 5.8995 1 5695100 + 6339 28314 4298 4395 7359;7360 7359 -0.002804316225024195 DPISIEMTL 9 Unmodified _DPISIEMTL_ 0 0 0 REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF REV__ENST00000523483.5_2_8:59483452-59484811:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.760498046875 2 509.759901 1017.50525 0.68166 0.00034748 -0.10226 -5.2126E-05 0.5794 0.00029536 509.76003598794705 91.081 0.72943 84.906 84.56 85.29 -6.1757 122 42 4 0 0 0 0.14602 1 60349 60349 28.487 6.7402 1 193280000 + 6340 28314 4298 4395 7361 7361 -0.002804316225024195 DPISQIFKC 9 Unmodified _DPISQIFKC_ 0 0 0 REV__ENSG00000147459|ENST00000276440|DOCK5 REV__ENSG00000147459|ENST00000276440|DOCK5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.2919921875 2 525.76806 1049.52157 0.40805 0.00021454 -0.72266 -0.00037995 -0.31462 -0.00016542 525.7684108932652 65.685 0.57384 59.509 59.344 59.918 -6.1757 64 33 3 0 0 0 0.19205 1 42802 42802 14.838 6.245 1 31572000 + 6341 20890 4299 4396 7362 7362 -0.0012130566574342083 DPISYHISFD 10 Unmodified _DPISYHISFD_ 0 0 0 ENSG00000148600|ENST00000623527|CDHR1;nc|ENSG00000148600|Q96JP9-2|CDHR1 ENSG00000148600|ENST00000623527|CDHR1 ENSG00000148600|ENST00000623527|CDHR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2771606445312 2 597.277303 1192.54005 0.20842 0.00012449 0.91743 0.00054796 1.1259 0.00067245 597.2779186121668 67.426 0.18895 67.426 67.294 67.483 0 11 7 2 0 0 0 0.71276 1 37595 37595 1.4819 0 1 451430 6342 5946 4300 4397 7363 7363 -0.04851472490190645 DPITAVYNF 9 Unmodified _DPITAVYNF_ 0 0 0 REV__ENSG00000103888|ENST00000394685|CEMIP REV__ENSG00000103888|ENST00000394685|CEMIP MSMS AL20221201_MKP_PDAC_01 4 520.26220703125 2 520.258382 1038.50221 NaN NaN NaN NaN NaN NaN NaN 74.51 1 68.335 67.835 68.835 -6.1757 0 0 0 0.53226 1 48711 48711 14.838 1.3304 1 + 6343 18327 4301 4398 7364 7364 -0.015499386850024166 DPKNTHILV 9 Unmodified _DPKNTHILV_ 0 0 0 ENST00000497974.1_1_9:31254459-31254564:+|nuORF ENST00000497974.1_1_9:31254459-31254564:+|nuORF ENST00000497974.1_1_9:31254459-31254564:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7566528320312 2 518.792924 1035.57129 0.30916 0.00016039 -0.448 -0.00023242 -0.13884 -7.203E-05 518.7927279834767 39.883 0.12057 39.883 39.812 39.932 0 8 5 2 0 0 0 0.20528 1 21406 21406 4.756 0 1 556720 6344 14409 4302 4399 7365 7365 0.05493145334571636 DPKWLGRYL 9 Unmodified _DPKWLGRYL_ 0 0 0 ENSG00000236543|ENST00000430816|unknown ENSG00000236543|ENST00000430816|unknown ENSG00000236543|ENST00000430816|unknown MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.7899169921875 2 574.316566 1146.61858 0.91268 0.00052417 -0.068358 -3.9259E-05 0.84432 0.00048491 574.3167982281408 55.688 0.41424 49.767 49.573 49.987 -5.9211 45 24 2 0 0 0 0.18118 1 35559 35559 12.532 2.4576 1 44938000 6345 10648 4303 4400 7366 7366 0.051134246055880794 DPKWLGRYL 9 Unmodified _DPKWLGRYL_ 0 0 0 ENSG00000236543|ENST00000430816|unknown ENSG00000236543|ENST00000430816|unknown ENSG00000236543|ENST00000430816|unknown MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.316566 1146.61858 1.4013 0.00080479 -1.2271 -0.00070476 0.17417 0.00010003 574.3156306782861 50.064 0.3039 50.015 49.865 50.169 -0.048824 0.12389 -0.00048008 NaN 7.9102 39 14 3 NaN NaN NaN NaN 0 NaN NaN 0 10357000 6346 10648 4303 4400 0.051134246055880794 DPLARARSGRI 11 Unmodified _DPLARARSGRI_ 0 0 0 REV__ENSG00000178896|ENST00000316052|EXOSC4 REV__ENSG00000178896|ENST00000316052|EXOSC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 404.5333251953125 3 404.570427 1210.68945 1.2507 0.00050599 0.59596 0.00024111 1.8466 0.0007471 404.57066280736666 20.262 0.29688 17.569 17.445 17.742 -2.693 33 20 2 0 0 0 0.28456 1 10738 10738 6.2344 0 1 4381600 + 6347 23070 4304 4401 7367 7367 0.09253517643082887 DPLCVPHIY 9 Unmodified _DPLCVPHIY_ 0 0 0 REV__ENSG00000180210|ENST00000311907|F2 REV__ENSG00000180210|ENST00000311907|F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.764892578125 2 528.762778 1055.511 0.78969 0.00041756 1.2884 0.00068125 2.0781 0.0010988 528.7641673095675 80.605 0.34251 80.112 79.929 80.271 -0.49247 18 13 2 0 0 0 0.14602 1 44158 44158 28.487 10.352 1 950720 + + 6348 16834 4305 4402 7368 7368 -0.014532883201809454 DPLDAAIFY 9 Unmodified _DPLDAAIFY_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7530517578125 2 512.752933 1023.49131 0.25426 0.00013037 1.0818 0.00055469 1.336 0.00068506 512.7533758600949 84.728 0.34335 84.728 84.567 84.91 0 36 16 3 0 0 0 0.23158 2 47018 46924;47018 20.454 8.8133 1 1152400 6349 8264 4306 4403 7369;7370 7370 -0.019493410592986038 DPLDIDLE 8 Unmodified _DPLDIDLE_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MSMS AL20221201_MKP_PDAC_01 4 465.2281494140625 2 465.226748 928.438943 NaN NaN NaN NaN NaN NaN NaN 52.175 1 46.441 45.941 46.941 -5.7345 0 0 0 0.9192 1 32921 32921 16.942 2.3606 1 6350 3160 4307 4404 7371 7371 -0.028139241929011405 DPLEAFPVF 9 Unmodified _DPLEAFPVF_ 0 0 0 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;ENST00000544138.5_1_11:63714317-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7642822265625 2 517.7633 1033.51205 0.27238 0.00014103 1.7035 0.00088203 1.9759 0.0010231 517.7642216745729 98.632 0.24001 98.439 98.332 98.572 -0.19321 12 7 2 0 0 0 0.55144 1 53879 53879 4.3292 1.7518 1 663540 6351 2726 4308 4405 7372 7372 -0.0033675067961667082 DPLEAFPVF 9 Unmodified _DPLEAFPVF_ 0 0 0 ENST00000536939.1_1_11:63706535-63720038:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF;ENST00000544138.5_1_11:63714317-63721948:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF ENST00000536939.1_1_11:63706535-63720038:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.7633 1033.51205 0.31339 0.00016226 0.34814 0.00018026 0.66153 0.00034252 517.7639065204714 98.406 0.17084 98.406 98.294 98.465 0 -0.016509 -0.0011212 NaN 4.3292 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 275080 6352 2726 4308 4405 -0.0033675067961667082 DPLEQDELHTF 11 Unmodified _DPLEQDELHTF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.3110961914062 2 672.309332 1342.60411 -0.34048 -0.00022891 0.32661 0.00021958 -0.013877 -9.3297E-06 672.30947653011 55.167 0.38266 55.167 54.944 55.327 0 51 16 4 0 0 0 2.0699E-29 2 30579 30579;30679 166.77 128.15 1 14134000 6353 1444 4309 4406 7373;7374 7373 -0.05348737123927094 DPLEQDELHTF 11 Unmodified _DPLEQDELHTF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8129272460938 2 672.309332 1342.60411 1.8863 0.0012682 -0.46789 -0.00031457 1.4184 0.00095361 672.3083288761404 62.819 0.43754 56.643 56.398 56.836 -6.1757 50 21 3 0 0 0 2.0128E-43 2 40490 40490;40627 185.27 135.72 1 28851000 6354 1444 4309 4406 7375;7376 7375 -0.05348737123927094 DPLERSFLY 9 Unmodified _DPLERSFLY_ 0 0 0 nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1 nc|ENSG00000258436|Q7Z5J4-4|RAI1 nc|ENSG00000258436|Q7Z5J4-4|RAI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2916259765625 2 570.290214 1138.56587 0.4467 0.00025475 -0.40452 -0.00023069 0.042187 2.4059E-05 570.2906674830124 61.309 0.36524 61.309 61.045 61.411 0 41 15 3 0 0 0 0.020316 1 34187 34187 63.227 34.741 1 5600100 6355 2581 4310 4407 7377 7377 0.002134217521188475 DPLERSFLY 9 Unmodified _DPLERSFLY_ 0 0 0 nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1 nc|ENSG00000258436|Q7Z5J4-4|RAI1 nc|ENSG00000258436|Q7Z5J4-4|RAI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.290771484375 2 570.290214 1138.56587 0.50234 0.00028648 2.0672 0.0011789 2.5695 0.0014654 570.2901077981176 61.877 0.24657 61.389 61.222 61.469 -0.48764 29 11 4 0 0 0 0.082934 1 33667 33667 37.075 10.191 1 4488700 6356 2581 4310 4407 7378 7378 0.002134217521188475 DPLHQEVSF 9 Unmodified _DPLHQEVSF_ 0 0 0 nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2587890625 2 536.258914 1070.50327 NaN NaN NaN NaN NaN NaN NaN 50.009 1 50.009 49.509 50.509 0 0 0 0 0.02218 1 27550 27550 75.761 35.811 1 6357 4897 4311 4408 7379 7379 -0.029157243160852886 DPLKDLVSL 9 Unmodified _DPLKDLVSL_ 0 0 0 nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC nc|ENSG00000141905|P08651-4|NFIC nc|ENSG00000141905|P08651-4|NFIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2904052734375 2 500.289682 998.564812 0.5706 0.00028547 -0.44638 -0.00022332 0.12423 6.215E-05 500.2895871380921 74.647 0.35527 74.647 74.448 74.803 0 25 15 3 0 0 0 0.41742 1 41527 41527 11.64 1.5664 1 603890 6358 5379 4312 4409 7380 7380 0.06547207383187015 DPLKDLVSL 9 Unmodified _DPLKDLVSL_ 0 0 0 nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC nc|ENSG00000141905|P08651-4|NFIC nc|ENSG00000141905|P08651-4|NFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2910766601562 2 500.289682 998.564812 NaN NaN NaN NaN NaN NaN NaN 75.121 1 74.644 74.144 75.144 -0.47714 0 0 0 0.39118 1 41116 41116 20.415 6.5085 1 6359 5379 4312 4409 7381 7381 0.06547207383187015 DPLKDYEADSS 11 Unmodified _DPLKDYEADSS_ 0 0 0 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8514099121094 3 413.850702 1238.53028 -0.63349 -0.00026217 1.6546 0.00068474 1.0211 0.00042258 413.851325565692 26.682 0.42121 26.682 26.488 26.909 0 47 19 3 0 0 0 0.6889 1 13692 13692 2.4348 0.69251 1 1486400 + 6360 18779 4313 4410 7382 7382 -0.07944705286217868 DPLKFYATSY 10 Unmodified _DPLKFYATSY_ 0 0 0 nc|ENSG00000162148|Q7Z5V6-2|SAXO4;ENSG00000162148|ENST00000338608|PPP1R32 nc|ENSG00000162148|Q7Z5V6-2|SAXO4 nc|ENSG00000162148|Q7Z5V6-2|SAXO4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7100830078125 2 602.797872 1203.58119 0.29148 0.0001757 -0.20278 -0.00012224 0.088691 5.3463E-05 603.2978565760076 50.951 0.17072 50.951 50.843 51.014 0 20 8 3 0 0 0 0.23325 1 28053 28053 6.2058 2.9245 1 1844800 6361 6839 4314 4411 7383 7383 -0.012457114507014921 DPLKLVATF 9 Unmodified _DPLKLVATF_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.295166015625 2 502.294768 1002.57498 0.2862 0.00014375 0.45519 0.00022864 0.74138 0.00037239 502.2950681054357 75.672 0.37506 75.194 74.997 75.372 -0.47714 39 17 3 0 0 0 0.078314 2 41379 41379;41477 38.176 23.337 1 3678000 6362 7545 4315 4412 7384;7385 7384 0.07379815108424737 DPLKLVATF 9 Unmodified _DPLKLVATF_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2957458496094 2 502.294768 1002.57498 NaN NaN NaN NaN NaN NaN NaN 75.115 1 75.161 74.661 75.661 0.045959 0 0 0 0.076083 1 41418 41418 49.554 32.441 1 6363 7545 4315 4412 7386 7386 0.07379815108424737 DPLKVYPPL 9 Unmodified _DPLKVYPPL_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74 nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.3011474609375 2 521.302593 1040.59063 0.29721 0.00015493 -0.60794 -0.00031692 -0.31074 -0.00016199 521.3018751100085 65.057 0.60081 64.573 64.148 64.749 -0.48428 64 27 3 0 0 0 0.07087 1 35417 35417 39.95 18.203 1 2524900 6364 517 4316 4413 7387 7387 0.07196101625481788 DPLLDEQAF 9 Unmodified _DPLLDEQAF_ 0 0 0 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2531127929688 2 524.253297 1046.49204 0.68113 0.00035709 -0.19033 -9.9782E-05 0.4908 0.00025731 524.2528463105965 66.723 0.28204 66.723 66.557 66.839 0 22 12 2 0 0 0 0.12424 1 37191 37191 30.637 20.563 1 1639500 6365 8847 4317 4414 7388 7388 -0.029345464102334518 DPLLRPSPL 9 Unmodified _DPLLRPSPL_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2972106933594 2 504.297842 1006.58113 -0.36996 -0.00018657 0.20545 0.00010361 -0.1645 -8.2959E-05 504.2979378444148 60.211 0.53658 59.721 59.411 59.948 -0.49079 89 26 4 0 0 0 0.032796 1 32641 32641 53.833 8.1332 1 92982000 6366 9828 4318 4415 7389 7389 0.0781033333993264 DPLLWRFLY 9 Unmodified _DPLLWRFLY_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32889009-32894514:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.834716796875 2 611.834591 1221.65463 3.4357 0.0021021 -0.69008 -0.00042221 2.7457 0.0016799 611.8328807724757 99.651 0.21866 99.615 99.477 99.695 -0.036301 17 7 5 0 0 0 0.062454 1 55375 55375 46.021 8.047 1 5776800 6367 1772 4319 4416 7390 7390 0.052668817824269354 DPLPLGSSSF 10 Unmodified _DPLPLGSSSF_ 0 0 0 ENST00000513423.1_1_5:176524254-176524674:+|nuORF;nc|ENSG00000160867|P22455-2|FGFR4;ENSG00000160867|ENST00000292408|FGFR4 ENST00000513423.1_1_5:176524254-176524674:+|nuORF ENST00000513423.1_1_5:176524254-176524674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2608642578125 2 510.25584 1018.49713 -0.04559 -2.3263E-05 1.2133 0.00061907 1.1677 0.00059581 510.25623228493936 71.019 0.40529 71.019 70.831 71.237 0 67 25 4 0 0 0 0.52888 1 39499 39499 14.838 4.0143 1 8159800 6368 6761 4320 4417 7391 7391 -0.0113824254760857 DPLRFHAHY 9 Unmodified _DPLRFHAHY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8612060546875 3 385.861319 1154.56213 0.28238 0.00010896 0.24997 9.6455E-05 0.53236 0.00020542 385.8613548849552 31.25 0.20759 31.147 31.053 31.26 -0.10269 16 7 3 0 0 0 0.14602 1 16243 16243 26.268 14.75 1 4105100 6369 8039 4321 4418 7392 7392 -0.008972032311021394 DPLRFHAHY 9 Unmodified _DPLRFHAHY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8621215820312 3 385.861319 1154.56213 1.3272 0.00051211 0.32061 0.00012371 1.6478 0.00063582 385.8615040160049 34.794 0.33797 30.698 30.518 30.856 -4.0951 44 19 3 0 0 0 0.34999 1 20090 20090 14.405 5.9611 1 18194000 6370 8039 4321 4418 7393 7393 -0.008972032311021394 DPLRFHAHY 9 Unmodified _DPLRFHAHY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 385.861319 1154.56213 0.030567 1.1795E-05 -0.030862 -1.1909E-05 -0.00029501 -1.1383E-07 386.1954364092125 31.223 0.14458 31.223 31.194 31.339 0 0.038027 -0.00026668 NaN 26.268 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 717440 6371 8039 4321 4418 -0.008972032311021394 DPLRVQIRC 9 Unmodified _DPLRVQIRC_ 0 0 0 REV__ENSG00000162191|ENST00000301935|UBXN1 REV__ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5411987304688 3 367.206209 1098.5968 0.01731 6.3562E-06 1.6986 0.00062375 1.7159 0.00063011 367.5413245413161 18.049 0.18203 18.055 17.952 18.134 0.0060482 28 11 3 0 0 0 0.55775 1 9112 9112 2.2828 0 1 1181200 + 6372 21629 4322 4419 7394 7394 0.05144296585331176 DPLSRGLRRR 10 Unmodified _DPLSRGLRRR_ 0 0 0 ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-3|SMOX;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX ENSG00000088826|ENST00000305958|SMOX ENSG00000088826|ENST00000305958|SMOX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.3680419921875 2 613.365444 1224.71634 NaN NaN NaN NaN NaN NaN NaN 77.562 1 77.562 77.062 78.062 0 0 0 0 0.94014 1 43120 43120 6.2058 1.4498 1 6373 1497 4323 4420 7395 7395 0.11296626254261355 DPLTLFRYI 9 Unmodified _DPLTLFRYI_ 0 0 0 REV__ENSG00000179562|ENST00000321407|GCC1 REV__ENSG00000179562|ENST00000321407|GCC1 MSMS AL20221201_MKP_PDAC_01 4 379.8822326660156 3 379.881608 1136.623 NaN NaN NaN NaN NaN NaN NaN 20.622 1 17.929 17.429 18.429 -2.693 0 0 0 0.73776 1 10992 10992 8.1555 4.5685 1 + 6374 23103 4324 4421 7396 7396 0.06014889028483594 DPLVEALLICH 11 Unmodified _DPLVEALLICH_ 0 0 0 ENSG00000158169|ENST00000289081|FANCC ENSG00000158169|ENST00000289081|FANCC ENSG00000158169|ENST00000289081|FANCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8284301757812 2 611.828649 1221.64274 -0.35273 -0.00021581 -0.87119 -0.00053302 -1.2239 -0.00074883 611.8280440422212 77.154 0.19997 76.671 76.603 76.803 -0.4826 12 8 2 0 0 0 0.65108 1 42253 42253 8.7454 2.115 1 410680 6375 6570 4325 4422 7397 7397 0.040788969769437244 DPLVLGPLS 9 Unmodified _DPLVLGPLS_ 0 0 0 REV__ENSG00000180043|ENST00000424985|GARIN5B REV__ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.52490234375 1 910.52441 909.517133 0.058946 5.3672E-05 0.71074 0.00064715 0.76969 0.00070082 910.5251128473433 88.578 0.31862 88.578 88.398 88.717 0 31 15 3 0 0 0 0.43463 1 48971 48971 10.824 3.5347 1 921860 + 6376 23135 4326 4423 7398 7398 0.05875553183000193 DPLYSPVDI 9 Unmodified _DPLYSPVDI_ 0 0 0 REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7601928710938 2 509.758215 1017.50188 0.36104 0.00018404 -3.4351 -0.0017511 -3.0741 -0.0015671 509.7565707983064 63.344 0.37344 63.344 63.146 63.52 0 27 19 2 0 0 0 0.41742 1 35406 35406 11.64 3.7301 1 4283600 + 6377 23272 4327 4424 7399 7399 -0.006173584048610792 DPLYTRLLL 9 Unmodified _DPLYTRLLL_ 0 0 0 REV__ENSG00000166189|ENST00000299238|HPS6 REV__ENSG00000166189|ENST00000299238|HPS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3269653320312 2 552.326599 1102.63865 1.337 0.00073847 -0.97946 -0.00054098 0.35756 0.00019749 552.3256949132979 96.547 0.55187 90.371 90.104 90.656 -6.1757 131 32 5 0 0 0 0.07916 1 64090 64090 37.974 0 1 3304899999.9999995 + 6378 22093 4328 4425 7400 7400 0.09143175545523263 DPMAMTQKY 9 Oxidation (M) _DPMAM(Oxidation (M))TQKY_ DPMAM(1)TQKY DPM(-37)AM(37)TQKY 0 0 1 ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7413940429688 2 550.741185 1099.46782 0.4941 0.00027212 0.36304 0.00019994 0.85714 0.00047206 550.7415178861385 28.247 0.36729 25.099 24.826 25.193 -3.1482 40 19 3 0 0 0 0.011291 1 15684 15684 76.825 55.288 2 8545100 6379 1469 4329 4426 7401 7401 252;253 -0.07793846159779605 DPMAMTQKY 9 Oxidation (M) _DPM(Oxidation (M))AMTQKY_ DPM(1)AMTQKY DPM(56)AM(-56)TQKY 0 0 1 ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7424926757812 2 550.741185 1099.46782 0.73624 0.00040548 1.0304 0.00056747 1.7666 0.00097295 550.7420252814416 28.695 0.23571 25.547 25.421 25.656 -3.1482 21 11 3 0 0 0 0.0082548 1 16022 16022 96.367 54.527 2 10352000 6380 1469 4329 4426 7402 7402 252;253 -0.07793846159779605 DPMAMTQKY 9 Unmodified _DPMAMTQKY_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7440795898438 2 542.743728 1083.4729 0.96241 0.00052234 -0.9624 -0.00052234 1.3261E-05 7.1971E-09 542.7435875418419 40.747 0.50901 36.217 35.971 36.48 -4.5294 50 23 3 0 0 0 0.0061223 1 24347 24347 114.2 74.252 1 20806000 6381 1469 4329 4427 7403 7403 -0.06549542297148037 DPMAMTQKY 9 2 Oxidation (M) _DPM(Oxidation (M))AM(Oxidation (M))TQKY_ DPM(1)AM(1)TQKY DPM(56)AM(56)TQKY 0 0 2 ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS AL20221201_MKP_PDAC_01 4 558.7378540039062 2 558.738642 1115.46273 NaN NaN NaN NaN NaN NaN NaN 18.804 1 16.183 15.683 16.683 -2.6215 0 0 0 0.054801 1 9925 9925 55.503 39.354 1 6382 1469 4329 4428 7404 7404 252;253 -0.09038150022388436 DPMKARVVL 9 Unmodified _DPMKARVVL_ 0 0 0 nc|ENSG00000143742|P49458-2|SRP9;ENSG00000143742|ENST00000304786|SRP9 nc|ENSG00000143742|P49458-2|SRP9 nc|ENSG00000143742|P49458-2|SRP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.800537109375 2 514.799694 1027.58484 0.52465 0.00027009 -0.12052 -6.2042E-05 0.40413 0.00020805 514.7998540572518 43.899 0.35436 39.134 38.919 39.273 -4.7648 39 22 2 0 0 0 0.039985 1 26729 26729 49.933 34.086 1 21319000 6383 5545 4330 4429 7405 7405 0.07214679842149962 DPMKDILIL 9 Unmodified _DPMKDILIL_ 0 0 0 ENSG00000137959|ENST00000370751|IFI44L;ENST00000486882.5_1_1:79094613-79107491:+|nuORF ENSG00000137959|ENST00000370751|IFI44L ENSG00000137959|ENST00000370751|IFI44L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.30224609375 2 529.301736 1056.58892 0.43926 0.0002325 -0.15622 -8.269E-05 0.28304 0.00014981 529.3017132302824 83.873 0.33469 83.374 83.172 83.507 -0.49961 33 13 3 0 0 0 0.30202 1 45859 45859 17.113 1.2657 1 1640200 6384 4993 4331 4430 7406 7406 0.06288724545220248 DPMKDILIL 9 Unmodified _DPMKDILIL_ 0 0 0 ENSG00000137959|ENST00000370751|IFI44L;ENST00000486882.5_1_1:79094613-79107491:+|nuORF ENSG00000137959|ENST00000370751|IFI44L ENSG00000137959|ENST00000370751|IFI44L MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3021850585938 2 529.301736 1056.58892 1.3663 0.0007232 -0.10537 -5.5773E-05 1.261 0.00066742 529.3017123253888 98.381 0.23729 92.206 92.087 92.324 -6.1757 41 15 3 0 0 0 0.010611 1 65215 65215 78.728 27.873 1 59158000 6385 4993 4331 4430 7407 7407 0.06288724545220248 DPMRLQKIRF 10 Unmodified _DPMRLQKIRF_ 0 0 0 nc|ENSG00000173928|Q6NVH7|SWSAP1;ENSG00000173928|ENST00000674460|SWSAP1 nc|ENSG00000173928|Q6NVH7|SWSAP1 nc|ENSG00000173928|Q6NVH7|SWSAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2493286132812 3 435.248297 1302.72306 1.3094 0.00056993 2.3616 0.0010279 3.671 0.0015978 435.24991596401344 97.946 0.16034 91.77 91.687 91.847 -6.1757 21 9 3 0 0 0 0.52659 1 64910 64910 14.957 6.5129 1 27554000 6386 8378 4332 4431 7408 7408 0.08380803090585687 DPMYRREGSY 10 Oxidation (M) _DPM(Oxidation (M))YRREGSY_ DPM(1)YRREGSY DPM(46)YRREGSY 0 0 1 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.2828369140625 2 645.282594 1288.55064 1.0727 0.00069223 -0.55884 -0.00036061 0.51391 0.00033162 645.2826884168616 37.73 0.42035 33.361 33.11 33.531 -4.3689 57 25 3 0 0 0 0.10424 1 22081 22081 45.7 19.431 1 14548000 6387 3753 4333 4432 7409 7409 657 -0.08209813107418995 DPNAVMYPTY 10 Oxidation (M) _DPNAVM(Oxidation (M))YPTY_ DPNAVM(1)YPTY DPNAVM(120)YPTY 0 0 1 ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7573852539062 2 593.757889 1185.50123 -0.013653 -8.1067E-06 -0.098497 -5.8484E-05 -0.11215 -6.659E-05 593.7578835619489 45.529 0.25587 45.529 45.429 45.685 0 33 13 3 0 0 0 0.00013919 1 24804 24804 118.07 97.615 1 12357000 6388 4956 4334 4433 7410 7410 905 -0.08410521116206837 DPNAVMYPTY 10 Unmodified _DPNAVMYPTY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.76123046875 2 585.760432 1169.50631 2.2087 0.0012938 1.2289 0.00071983 3.4376 0.0020136 585.7603711773019 62.663 0.30144 56.487 56.322 56.623 -6.1757 32 14 3 0 0 0 0.30444 1 40475 40475 27.223 14.983 1 15742000 6389 4956 4334 4434 7411 7411 -0.07166217253575269 DPNDQVAMGRQ 11 Unmodified _DPNDQVAMGRQ_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MSMS AL20221201_MKP_PDAC_01 4 410.8578186035156 3 410.855905 1229.54588 NaN NaN NaN NaN NaN NaN NaN 15.23 1 12.703 12.203 13.203 -2.5273 0 0 0 0.93933 1 7795 7795 1.2148 0.25256 1 6390 10908 4335 4435 7412 7412 -0.05970697250154444 DPNEIKVVY 9 Unmodified _DPNEIKVVY_ 0 0 0 nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12 nc|ENSG00000197958|P30050-2|RPL12 nc|ENSG00000197958|P30050-2|RPL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7852783203125 2 538.784764 1075.55498 0.91885 0.00049506 -1.5268 -0.00082262 -0.60797 -0.00032756 538.7843873309969 46.227 0.46658 46.227 45.994 46.461 0 82 21 5 0 0 0 0.0020017 2 25193 25193;25303 132.38 70.778 1 93693000 6391 10029 4336 4436 7413;7414 7413 0.020220193778186513 DPNEIKVVY 9 Unmodified _DPNEIKVVY_ 0 0 0 nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12 nc|ENSG00000197958|P30050-2|RPL12 nc|ENSG00000197958|P30050-2|RPL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.286865234375 2 538.784764 1075.55498 0.89764 0.00048363 0.55534 0.00029921 1.453 0.00078284 538.7850286482574 52.753 0.43198 47.018 46.817 47.249 -5.7345 62 23 3 0 0 0 0.00085914 2 33211 33211;33330 140.63 87.229 1 171070000 6392 10029 4336 4436 7415;7416 7415 0.020220193778186513 DPNFLALRLLY 11 Unmodified _DPNFLALRLLY_ 0 0 0 REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.8782348632812 2 667.876988 1333.73942 0.71435 0.0004771 1.8073 0.001207 2.5216 0.0016841 667.8780614639057 92.23 0.32974 86.054 85.872 86.202 -6.1757 31 19 2 0 0 0 0.59689 1 60920 60920 11.495 5.7629 1 17307000 + 6393 23753 4337 4437 7417 7417 0.0859020752836841 DPNIFAYAC 9 Unmodified _DPNIFAYAC_ 0 0 0 nc|ENSG00000206562|Q8TCB7-2|METTL6;ENSG00000206562|ENST00000383790|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 nc|ENSG00000206562|Q8TCB7-2|METTL6 MSMS AL20221201_MKP_PDAC_01 4 506.8429870605469 2 507.223485 1012.43242 NaN NaN NaN NaN NaN NaN NaN 95.684 1 89.508 89.008 90.008 -6.1757 0 0 0 0.71962 1 63382 63382 8.7454 2.3913 1 6394 10404 4338 4438 7418 7418 -0.07330140625276726 DPNKPLTY 8 Unmodified _DPNKPLTY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7468566894531 2 474.245275 946.475997 -0.26367 -0.00012505 -0.26333 -0.00012488 -0.527 -0.00024993 474.2451087617775 29.557 0.2328 29.557 29.489 29.722 0 25 15 2 0 0 0 0.21098 1 15316 15316 68.081 25.986 1 4894800 6395 4309 4339 4439 7419 7419 0.0006179214350368056 DPNKPLTY 8 Unmodified _DPNKPLTY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2468872070312 2 474.245275 946.475997 1.3438 0.00063731 1.1768 0.00055808 2.5206 0.0011954 474.2461602127316 33.794 0.39355 29.809 29.572 29.965 -3.9853 43 21 3 0 0 0 0.071044 2 19449 19318;19449 122.18 80.085 1 12877000 6396 4309 4339 4439 7420;7421 7421 0.0006179214350368056 DPNLEFVAM 9 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ DPNLEFVAM(1) DPNLEFVAM(100) 0 0 1 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2469482421875 2 526.241875 1050.4692 0.52774 0.00027772 0.034569 1.8192E-05 0.56231 0.00029591 526.2419943998285 58.426 0.68988 58.426 58.058 58.748 0 119 27 6 0 0 0 0.0088174 3 32365 32365;32464;32564 103.75 71.631 1 67607000 6397 4395 4340 4440 7422;7423;7424 7422 796 -0.05401888799360677 DPNLEFVAM 9 Oxidation (M) _DPNLEFVAM(Oxidation (M))_ DPNLEFVAM(1) DPNLEFVAM(63) 0 0 1 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2421875 2 526.241875 1050.4692 0.81786 0.00043039 -0.024047 -1.2654E-05 0.79381 0.00041774 526.2420643261432 67.326 0.58081 61.15 60.857 61.438 -6.1757 77 32 3 0 0 0 0.020973 2 43894 43769;43894 62.573 39.424 1 47323000 6398 4395 4340 4440 7425;7426 7426 796 -0.05401888799360677 DPNLEFVAM 9 Unmodified _DPNLEFVAM_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2442626953125 2 518.244418 1034.47428 0.32548 0.00016868 -0.7712 -0.00039967 -0.44572 -0.00023099 518.2440400562447 77.338 0.41515 77.338 77.085 77.5 0 41 25 3 0 0 0 0.078314 2 42960 42960;43057 38.176 21.233 1 2061200 6399 4395 4340 4441 7427;7428 7427 -0.04157584936751846 DPNLEFVAM 9 Unmodified _DPNLEFVAM_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2451782226562 2 518.244418 1034.47428 1.1454 0.0005936 -1.7086 -0.00088547 -0.56319 -0.00029187 518.2442254716674 86.075 0.75274 79.899 79.513 80.266 -6.1757 115 41 4 0 0 0 0.047788 2 56718 56718;56847 45.7 18.816 1 68025000 6400 4395 4340 4441 7429;7430 7429 -0.04157584936751846 DPNQHLTI 8 Unmodified _DPNQHLTI_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.24072265625 2 469.240524 936.466495 0.3385 0.00015884 0.62845 0.00029489 0.96695 0.00045373 469.2409276362492 41.53 0.21269 36.922 36.817 37.03 -4.6079 17 14 2 0 0 0 0.42423 1 24906 24906 42.095 0.25493 1 10776000 6401 6893 4341 4442 7431 7431 -0.004279761419979877 DPNQILIGY 9 Unmodified _DPNQILIGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7723388671875 2 516.771657 1031.52876 0.3784 0.00019554 1.2331 0.00063725 1.6115 0.0008328 516.7723038645313 66.13 0.46238 66.13 65.959 66.421 0 52 21 3 0 0 0 0.047196 1 36954 36954 46.021 16.939 1 8800600 6402 1104 4342 4443 7432 7432 0.014257502063401262 DPNQILIGY 9 Unmodified _DPNQILIGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7706298828125 2 516.771657 1031.52876 0.18455 9.5372E-05 -0.036041 -1.8625E-05 0.14851 7.6747E-05 516.7715027275912 66.788 0.28772 66.305 66.171 66.459 -0.48323 25 13 2 0 0 0 0.08691 1 36461 36461 36.127 10.728 1 3281600 6403 1104 4342 4443 7433 7433 0.014257502063401262 DPNQILIGY 9 Unmodified _DPNQILIGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7715454101562 2 516.771657 1031.52876 0.97993 0.0005064 1.2925 0.00066791 2.2724 0.0011743 516.7715935929921 74.859 0.59978 68.684 68.396 68.995 -6.1757 46 31 2 0 0 0 0.047788 2 48995 48865;48995 45.7 17.213 1 13935000 6404 1104 4342 4443 7434;7435 7435 0.014257502063401262 DPNRSCFLSY 10 Unmodified _DPNRSCFLSY_ 0 0 0 REV__nc|ENSG00000100523|Q8NEL9-3|DDHD1 REV__nc|ENSG00000100523|Q8NEL9-3|DDHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2697143554688 2 601.268955 1200.52336 0.31951 0.00019211 1.7242 0.0010367 2.0437 0.0012288 601.2680143803161 47.963 0.38614 42.729 42.435 42.821 -5.2339 35 23 2 0 0 0 0.32072 1 29859 29859 26.268 0.86883 1 9318500 + 6405 18078 4343 4444 7436 7436 -0.06888296647798597 DPPEEEIPF 9 Unmodified _DPPEEEIPF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2494506835938 2 536.745305 1071.47606 0.43657 0.00023433 -0.2324 -0.00012474 0.20418 0.00010959 536.7444502213951 67.613 0.37367 67.613 67.414 67.788 0 39 17 3 0 0 0 0.2143 1 37666 37666 21.747 9.2151 1 1743100 6406 601 4344 4445 7437 7437 -0.05682252647147834 DPPNRAKQKL 10 Unmodified _DPPNRAKQKL_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-3|CEP120;ENST00000503049.1_1_5:122726767-122729128:-|nuORF nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8933715820312 3 389.559528 1165.65676 -0.044938 -1.7506E-05 -4.3975 -0.0017131 -4.4424 -0.0017306 389.5563124505772 15.925 0.10678 15.93 15.858 15.964 0.0050564 17 8 3 0 0 0 0.69126 1 7948 7948 3.8763 0.88109 1 464230 6407 7819 4345 4446 7438 7438 0.08055310520217063 DPPWVHFHI 9 Unmodified _DPPWVHFHI_ 0 0 0 ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENST00000570116.6_1_16:89971082-89977643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2894897460938 2 574.287808 1146.56106 0.38594 0.00022164 2.0989 0.0012054 2.4849 0.001427 574.288990384505 90.482 0.44736 90.482 90.437 90.884 0 35 20 2 0 0 0 0.54444 1 50176 50176 4.756 2.1785 1 515250 6408 15469 4346 4447 7439 7439 -0.006354176000058942 DPQATWVR 8 Unmodified _DPQATWVR_ 0 0 0 ENSG00000143185|ENST00000367819|XCL2;ENSG00000143184|ENST00000367818|XCL1 ENSG00000143185|ENST00000367819|XCL2 ENSG00000143185|ENST00000367819|XCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.74951171875 2 486.748516 971.482479 0.88834 0.0004324 -0.51106 -0.00024876 0.37728 0.00018364 486.74864872141416 30.311 0.23667 26.814 26.678 26.915 -3.497 17 11 2 0 0 0 0.58902 1 17114 17114 26.884 0 1 9749300 6409 5473 4347 4448 7440 7440 -0.004402699051070158 DPQCPPDGRY 10 Unmodified _DPQCPPDGRY_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2489013671875 2 574.24548 1146.47641 0.4771 0.00027397 1.4659 0.00084181 1.943 0.0011158 574.245892892199 47.201 0.42865 47.201 46.999 47.427 0 53 19 5 0 0 0 0.54684 1 25794 25794 13.906 0 1 18179000 6410 2880 4348 4449 7441 7441 -0.09097156198936318 DPQCPPDGRY 10 Unmodified _DPQCPPDGRY_ 0 0 0 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1666259765625 3 383.166079 1146.47641 0.14155 5.4237E-05 0.82488 0.00031607 0.96643 0.0003703 383.166454512279 47.203 0.3407 47.203 47.044 47.384 0 28 15 2 0 0 0 0.68209 1 25821 25821 2.6312 0 1 9347300 6411 2880 4348 4449 7442 7442 -0.09097156198936318 DPQFSLWAI 9 Unmodified _DPQFSLWAI_ 0 0 0 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.77392578125 2 538.7742 1075.53385 0.34395 0.00018531 -0.19176 -0.00010332 0.15219 8.1994E-05 538.7740574417724 87.474 0.48668 86.97 86.708 87.195 -0.50423 72 21 4 0 0 0 0.47359 1 47766 47766 13.042 5.1323 1 12679000 6412 8239 4349 4450 7443 7443 -0.0008994593106308457 DPQFSLWAI 9 Unmodified _DPQFSLWAI_ 0 0 0 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7747192382812 2 538.7742 1075.53385 1.1872 0.00063964 -0.48535 -0.0002615 0.70187 0.00037815 538.7737731775148 95.565 1.3581 89.39 88.912 90.27 -6.1757 216 81 4 0 0 0 0.14594 1 63316 63316 37.974 17.52 1 170050000 6413 8239 4349 4450 7444 7444 -0.0008994593106308457 DPQHVVVLY 9 Unmodified _DPQHVVVLY_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000549498.5_1_12:53442984-53449630:+|nuORF nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2877197265625 2 535.287474 1068.5604 0.43997 0.00023551 0.38512 0.00020615 0.82509 0.00044166 535.2878135373752 52.866 0.30145 52.866 52.702 53.003 0 30 13 3 0 0 0 0.30202 1 29287 29287 17.113 7.7298 1 5386300 6414 2760 4350 4451 7445 7445 0.028857429603021956 DPQKVARFQ 9 Unmodified _DPQKVARFQ_ 0 0 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.2666625976562 2 544.795998 1087.57744 0.84429 0.00045997 -1.593 -0.00086785 -0.7487 -0.00040789 544.7953871605963 69.054 1.1602 62.878 62.455 63.615 -6.1757 116 63 3 0 0 0 0.18482 1 45337 45337 13.042 7.8118 1 54803000 6415 3974 4351 4452 7446 7446 0.03715663566094918 DPQKVQYDLK 10 Unmodified _DPQKVQYDLK_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-2|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7832641601562 2 617.327328 1232.6401 0.80622 0.0004977 -0.030259 -1.868E-05 0.77596 0.00047902 617.3273072717326 36.709 0.18652 36.709 36.61 36.796 0 12 8 2 0 0 0 0.23693 1 19513 19513 6.2058 0 1 1106300 6416 8860 4352 4453 7447 7447 0.03308764843609424 DPRAEDEVL 9 Unmodified _DPRAEDEVL_ 0 0 0 ENST00000526460.1_1_16:87990354-87990582:+|nuORF ENST00000526460.1_1_16:87990354-87990582:+|nuORF ENST00000526460.1_1_16:87990354-87990582:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.252685546875 2 522.253828 1042.4931 NaN NaN NaN NaN NaN NaN NaN 67.769 1 67.769 67.269 68.269 0 0 0 0 0.7243 1 37788 37788 8.5933 0 1 6417 14819 4353 4454 7448 7448 -0.026443320413363836 DPRLAKMQFR 10 Unmodified _DPRLAKMQFR_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1262.187866210938 1 1261.68339 1260.67611 1.4301 0.0018044 1.3059 0.0016476 2.736 0.003452 1261.6866602049909 66.36 0.11633 66.37 66.301 66.417 0.0095596 6 5 2 0 0 0 0.23986 1 36373 36373 1.6526 0 1 1912500 6418 293 4354 4455 7449 7449 0.0561994353947739 DPRLDHFR 8 Unmodified _DPRLDHFR_ 0 0 0 REV__ENSG00000189283|ENST00000492590|FHIT REV__ENSG00000189283|ENST00000492590|FHIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2739868164062 2 528.27269 1054.53083 -0.72684 -0.00038397 0.81955 0.00043294 0.092704 4.8973E-05 528.2728334607798 77.493 0.54751 77.01 76.743 77.29 -0.4826 67 25 3 0 0 0 0.80311 1 42551 42551 4.756 0 1 33605000 + 6419 23774 4355 4456 7450 7450 0.005742237347931223 DPRNITLLY 9 Unmodified _DPRNITLLY_ 0 0 0 ENST00000523988.5_1_13:45969507-45969588:-|nuORF ENST00000523988.5_1_13:45969507-45969588:-|nuORF ENST00000523988.5_1_13:45969507-45969588:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.80859375 2 552.806031 1103.59751 1.2744 0.00070449 1.1916 0.00065875 2.466 0.0013632 553.3078416706218 96.795 0.50713 90.619 90.37 90.877 -6.1757 115 29 5 0 0 0 0.08907 1 64124 64124 38.176 5.3899 1 601530000 6420 14770 4356 4457 7451 7451 0.04985414506040797 DPRPLAQTPA 10 Unmodified _DPRPLAQTPA_ 0 0 0 REV__ENST00000567216.5_1_16:587439-587742:+|nuORF REV__ENST00000567216.5_1_16:587439-587742:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1065.393798828125 1 1065.56873 1064.56146 0.29567 0.00031505 -0.16367 -0.0001744 0.132 0.00014065 1065.5710605717184 48.435 0.21814 48.063 47.905 48.123 -0.37172 14 10 2 0 0 0 0.23862 1 25960 25960 3.9444 0.66309 1 1901200 + 6421 28926 4357 4458 7452 7452 0.03175957329199264 DPRPRTFQ 8 Unmodified _DPRPRTFQ_ 0 0 0 ENST00000360315.7_1_19:19616958-19617048:+|nuORF ENST00000360315.7_1_19:19616958-19617048:+|nuORF ENST00000360315.7_1_19:19616958-19617048:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584228515625 2 508.76724 1015.51993 0.36537 0.00018589 0.74417 0.00037861 1.1095 0.0005645 508.7682801009885 80.065 0.22171 80.065 79.958 80.18 0 22 13 2 0 0 0 8.7369 1 44420 44420 8.5933 1.304 1 1587100 6422 12164 4358 4459 7453 7453 0.01278821360517668 DPRPWTQSL 9 Unmodified _DPRPWTQSL_ 0 0 0 ENSG00000171695|ENST00000302096|LKAAEAR1;nc|ENSG00000171695|Q8TD35-2|LKAAEAR1 ENSG00000171695|ENST00000302096|LKAAEAR1 ENSG00000171695|ENST00000302096|LKAAEAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1889038085938 3 367.189212 1098.54581 0.071425 2.6227E-05 -0.47955 -0.00017608 -0.40812 -0.00014986 367.1888139070488 51.78 0.28297 51.722 51.592 51.875 -0.058914 26 13 3 0 0 0 0.54444 1 28042 28042 8.7454 0 1 1292800 6423 8127 4359 4460 7454 7454 0.0004767081213685742 DPRYRHIL 8 Unmodified _DPRYRHIL_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2012329101562 3 357.201564 1068.58286 -0.021467 -7.6679E-06 0.12786 4.5673E-05 0.1064 3.8005E-05 357.2016616411627 18.009 0.21294 18.015 17.921 18.134 0.0060463 32 13 3 0 0 0 0.78849 1 9097 9097 6.7232 0 1 3509500 + 6424 19587 4360 4461 7455 7455 0.051313871485717755 DPRYWYGKTQ 10 Unmodified _DPRYWYGKTQ_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2149963378906 3 438.547288 1312.62004 -0.33565 -0.0001472 -2.3637 -0.0010366 -2.6994 -0.0011838 438.54636541520324 18.66 0.080236 18.66 18.611 18.692 0 13 9 2 0 0 0 0.72044 1 9283 9283 0.62683 0.35781 1 514850 6425 970 4361 4462 7456 7456 -0.023769860963511746 DPSDLYCDSF 10 Unmodified _DPSDLYCDSF_ 0 0 0 REV__nc|ENSG00000079482|O60890-2|OPHN1 REV__nc|ENSG00000079482|O60890-2|OPHN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.728515625 2 581.223879 1160.43321 -0.54657 -0.00031768 2.3175 0.001347 1.7709 0.0010293 581.2247733446023 55.65 0.439 55.65 55.414 55.853 0 48 34 2 0 0 0 0.69064 1 30865 30865 3.9444 0.3479 1 7022700 + 6426 17652 4362 4463 7457 7457 -0.14059390766897195 DPSDRPRF 8 Unmodified _DPSDRPRF_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2431335449219 2 495.243598 988.472643 NaN NaN NaN NaN NaN NaN NaN 83.22 1 82.722 82.222 83.222 -0.49751 0 0 0 0.97444 1 45556 45556 2.5775 0 1 6427 3552 4363 4464 7458 7458 -0.022054579104747063 DPSDYVRAM 9 Oxidation (M) _DPSDYVRAM(Oxidation (M))_ DPSDYVRAM(1) DPSDYVRAM(85) 0 0 1 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2348022460938 2 535.234581 1068.45461 -0.44107 -0.00023608 -0.77578 -0.00041523 -1.2169 -0.0006513 535.2340919127687 27.315 0.39218 27.315 27.096 27.488 0 30 19 2 0 0 0 0.0090948 2 14121 14025;14121 85.272 42.624 1 4423000 6428 3939 4364 4465 7459;7460 7460 704 -0.07687960947509964 DPSDYVRAM 9 Oxidation (M) _DPSDYVRAM(Oxidation (M))_ DPSDYVRAM(1) DPSDYVRAM(76) 0 0 1 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.234375 2 535.234581 1068.45461 0.7214 0.00038612 -0.5751 -0.00030781 0.1463 7.8306E-05 535.2342379487791 32.026 0.25586 28.33 28.138 28.394 -3.6958 22 13 2 0 0 0 0.011671 1 18152 18152 75.761 45.124 1 12029000 6429 3939 4364 4465 7461 7461 704 -0.07687960947509964 DPSEKYLGF 9 Unmodified _DPSEKYLGF_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.254150390625 2 528.25584 1054.49713 0.74544 0.00039378 -2.086 -0.001102 -1.3406 -0.00070818 528.2569326313011 73.879 0.3567 73.879 73.688 74.045 0 29 14 3 0 0 0 0.2001 1 41202 41202 23.148 3.8914 1 721750 6430 1695 4365 4466 7462 7462 -0.027942425476112476 DPSEVVITL 9 Unmodified _DPSEVVITL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.76611328125 2 486.76604 971.517527 0.53079 0.00025837 0.080996 3.9426E-05 0.61179 0.0002978 486.7659234366805 74.129 0.71249 74.129 73.807 74.52 0 114 32 5 0 0 0 0.0090851 3 41295 41195;41295;41391 85.357 49.313 1 11848000 6431 3760 4366 4467 7463;7464;7465 7464 0.030629281121946406 DPSEVVITL 9 Unmodified _DPSEVVITL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.5254516601562 1 972.524804 971.517527 0.44289 0.00043072 0.039663 3.8573E-05 0.48255 0.0004693 972.5247246382152 74.154 0.53065 74.154 73.879 74.41 0 63 24 3 0 0 0 0.0088975 2 41248 41248;41351 104.8 30.376 1 7791600 6432 3760 4366 4467 7466;7467 7466 0.030629281121946406 DPSEVVITL 9 Unmodified _DPSEVVITL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5280151367188 1 972.524804 971.517527 0.48919 0.00047575 0.53336 0.00051871 1.0226 0.00099446 972.5246614985961 82.939 0.49777 76.763 76.507 77.005 -6.1757 69 27 3 0 0 0 0.0082281 3 54379 54379;54505;54638 92.822 25.478 1 29667000 6433 3760 4366 4467 7468;7469;7470 7468 0.030629281121946406 DPSEVVITL 9 Unmodified _DPSEVVITL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7664489746094 2 486.76604 971.517527 0.79887 0.00038886 -0.2863 -0.00013936 0.51258 0.0002495 486.7658525947308 82.976 0.57124 76.8 76.474 77.045 -6.1757 97 31 4 0 0 0 0.012148 2 54483 54483;54615 74.423 47.539 1 76970000 6434 3760 4366 4467 7471;7472 7471 0.030629281121946406 DPSEVVITL 9 Unmodified _DPSEVVITL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.76604 971.517527 0.85651 0.00041692 1.2115 0.0005897 2.068 0.0010066 486.7658268752384 74.685 0.30681 74.209 74.042 74.349 -0.47588 0.040395 0.00099045 NaN 85.357 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 462470 6435 3760 4366 4467 0.030629281121946406 DPSFSLINI 9 Unmodified _DPSFSLINI_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7866516113281 2 503.266207 1004.51786 0.46785 0.00023545 0.95677 0.00048151 1.4246 0.00071697 503.2668144407108 85.229 0.29743 85.229 85.138 85.435 0 21 12 2 0 0 0 0.12183 1 47197 47197 34.102 5.6156 1 956750 6436 3124 4367 4468 7473 7473 0.01578347832048621 DPSGPPTFRL 10 Unmodified _DPSGPPTFRL_ 0 0 0 ENSG00000198844|ENST00000361926|ARHGEF15 ENSG00000198844|ENST00000361926|ARHGEF15 ENSG00000198844|ENST00000361926|ARHGEF15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2425537109375 2 543.782556 1085.55056 0.27003 0.00014684 1.4094 0.00076639 1.6794 0.00091323 543.7831459795219 52.717 0.24659 52.717 52.573 52.82 0 18 10 2 0 0 0 0.23325 1 29160 29160 6.2058 1.4498 1 4818400 6437 10172 4368 4469 7474 7474 0.01120554954900399 DPSLSALIY 9 Unmodified _DPSLSALIY_ 0 0 0 ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2 ENST00000560837.5_1_15:64982571-64983740:-|nuORF ENST00000560837.5_1_15:64982571-64983740:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.5150756835938 1 978.514239 977.506963 -0.29 -0.00028377 0.17292 0.00016921 -0.11708 -0.00011456 978.5141240044433 71.285 0.52641 71.285 70.997 71.523 0 42 25 2 0 0 0 0.026094 3 39694 39598;39694;39801 57.471 11.87 1 2133000 6438 8893 4369 4470 7475;7476;7477 7476 0.017309454577457473 DPSLSALIY 9 Unmodified _DPSLSALIY_ 0 0 0 ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2 ENST00000560837.5_1_15:64982571-64983740:-|nuORF ENST00000560837.5_1_15:64982571-64983740:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.513916015625 1 978.514239 977.506963 0.43719 0.00042779 0.25053 0.00024515 0.68772 0.00067294 978.5147551253378 71.754 0.34273 71.278 71.098 71.441 -0.47609 21 13 2 0 0 0 0.095405 2 39229 39229;39324 34.102 12.356 1 688430 6439 8893 4369 4470 7478;7479 7478 0.017309454577457473 DPSLSALIY 9 Unmodified _DPSLSALIY_ 0 0 0 ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2 ENST00000560837.5_1_15:64982571-64983740:-|nuORF ENST00000560837.5_1_15:64982571-64983740:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.5159912109375 1 978.514239 977.506963 1.2794 0.0012519 0.63862 0.0006249 1.918 0.0018768 978.5149141843715 79.354 0.43969 73.179 72.93 73.37 -6.1757 34 24 2 0 0 0 0.0090851 1 51919 51919 85.357 21.12 1 9380000 6440 8893 4369 4470 7480 7480 0.017309454577457473 DPSLSALIY 9 Unmodified _DPSLSALIY_ 0 0 0 ENST00000560837.5_1_15:64982571-64983740:-|nuORF;ENSG00000180304|ENST00000326005|OAZ2 ENST00000560837.5_1_15:64982571-64983740:-|nuORF ENST00000560837.5_1_15:64982571-64983740:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 489.7619018554688 2 489.760758 977.506963 NaN NaN NaN NaN NaN NaN NaN 79.327 1 73.151 72.651 73.651 -6.1757 0 0 0 0.071041 1 51973 51973 50.855 18.55 1 6441 8893 4369 4470 7481 7481 0.017309454577457473 DPSLSPDMPI 10 Unmodified _DPSLSPDMPI_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2549438476562 2 536.254982 1070.49541 0.26928 0.0001444 -0.38013 -0.00020384 -0.11084 -5.9441E-05 536.2549592913141 76.985 0.69876 76.985 76.663 77.362 0 159 39 6 0 0 0 0.67033 1 42708 42708 6.2058 0.47393 1 49801000 6442 3989 4370 4471 7482 7482 -0.03701619627895525 DPSLVGSI 8 Unmodified _DPSLVGSI_ 0 0 0 REV__ENSG00000145241|ENST00000273853|CENPC REV__ENSG00000145241|ENST00000273853|CENPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2142028808594 2 394.213443 786.412334 0.014683 5.7882E-06 2.8276 0.0011147 2.8423 0.0011205 394.2143694806809 38.864 0.25745 38.578 38.415 38.673 -0.28687 24 11 3 0 0 0 0.80232 1 20471 20471 5.2307 0 1 2000700 + 6443 20761 4371 4472 7483 7483 0.010584317064399329 DPSNSHDSTN 10 Unmodified _DPSNSHDSTN_ 0 0 0 REV__nc|ENSG00000073803|O43283-5|MAP3K13 REV__nc|ENSG00000073803|O43283-5|MAP3K13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2103881835938 2 537.210149 1072.40575 0.38338 0.00020595 -0.15268 -8.2021E-05 0.2307 0.00012393 537.2100032050104 58.209 0.31223 58.209 58.078 58.39 0 37 11 4 0 0 0 0.6785 1 32435 32435 5.2969 0.54088 1 3784500 + 6444 17542 4372 4473 7484 7484 -0.12756157982880723 DPSPHPLLAF 10 Unmodified _DPSPHPLLAF_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.287109375 2 547.287474 1092.5604 0.12176 6.6638E-05 0.34832 0.00019063 0.47009 0.00025727 547.2874567905982 70.241 0.26854 70.241 70.109 70.377 0 24 12 3 0 0 0 0.35903 1 39164 39164 24.021 6.9077 1 1532300 6445 7712 4373 4474 7485 7485 0.01781742960270094 DPSPHPLLAF 10 Unmodified _DPSPHPLLAF_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2877807617188 2 547.287474 1092.5604 0.19995 0.00010943 -0.56415 -0.00030875 -0.3642 -0.00019932 547.2870409527526 70.667 0.43373 70.19 70.049 70.483 -0.47735 75 29 4 0 0 0 0.0057604 2 38703 38598;38703 96.285 67.798 1 12789000 6446 7712 4373 4474 7486;7487 7487 0.01781742960270094 DPSSIYLLL 9 Unmodified _DPSSIYLLL_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7856140136719 2 510.784233 1019.55391 0.30957 0.00015812 0.83194 0.00042494 1.1415 0.00058307 510.7847370652921 78.413 0.39504 78.413 78.222 78.617 0 34 18 2 0 0 0 0.2001 1 43526 43526 23.148 5.0134 1 1192100 6447 16016 4374 4475 7488 7488 0.04491805008899519 DPSTGVLYT 9 Unmodified _DPSTGVLYT_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4614868164062 1 952.462204 951.454927 -0.20801 -0.00019812 -0.1793 -0.00017078 -0.38731 -0.0003689 952.4619307682773 39.497 0.47589 39.497 39.282 39.758 0 32 22 2 0 0 0 0.06187 1 21108 21108 42.095 2.1372 1 3220600 6448 7326 4375 4476 7489 7489 -0.022742179560054865 DPSTGVLYT 9 Unmodified _DPSTGVLYT_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 476.2686767578125 2 476.73474 951.454927 0.53079 0.00025304 -0.98083 -0.0004676 -0.45005 -0.00021455 476.73397496753927 46.337 0.35044 41.257 41.009 41.359 -5.0805 37 23 2 0 0 0 0.17718 1 28507 28507 20.454 11.86 1 13507000 6449 7326 4375 4476 7490 7490 -0.022742179560054865 DPSVDFSAF 9 Unmodified _DPSVDFSAF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 984.4317016601562 1 984.430903 983.423627 -0.18814 -0.00018521 0.17556 0.00017282 -0.012582 -1.2387E-05 984.4309246719116 71.711 0.37434 71.711 71.466 71.84 0 28 16 2 0 0 0 0.026094 2 39962 39865;39962 57.471 40.529 1 1118200 6450 8367 4376 4477 7491;7492 7492 -0.06874790990093516 DPSVDFSAF 9 Unmodified _DPSVDFSAF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7186584472656 2 492.71909 983.423627 -0.10295 -5.0723E-05 2.0253 0.00099788 1.9223 0.00094716 492.7193716405475 71.686 0.37586 71.686 71.421 71.796 0 26 16 2 0 0 0 0.12841 1 39954 39954 30.225 15.643 1 881970 6451 8367 4376 4477 7493 7493 -0.06874790990093516 DPSVDFSAF 9 Unmodified _DPSVDFSAF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7188720703125 2 492.71909 983.423627 0.64144 0.00031605 2.1734 0.0010709 2.8148 0.0013869 492.71972408785774 80.581 0.093102 74.405 74.35 74.443 -6.1757 6 4 2 0 0 0 0.026094 1 52838 52838 57.471 34.323 1 5632700 6452 8367 4376 4477 7494 7494 -0.06874790990093516 DPTAVGPVL 9 Unmodified _DPTAVGPVL_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.477294921875 1 868.47746 867.470183 0.23819 0.00020687 0.24213 0.00021029 0.48033 0.00041716 868.4779721434045 56.826 0.33528 56.826 56.662 56.998 0 28 14 3 0 0 0 0.0083087 1 31600 31600 97.075 29.731 1 3512000 6453 5968 4377 4478 7495 7495 0.031146936318691587 DPTAVGPVL 9 Unmodified _DPTAVGPVL_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7422180175781 2 434.742368 867.470183 0.28984 0.000126 0.3284 0.00014277 0.61824 0.00026877 434.7424983408217 56.836 0.38672 56.836 56.635 57.022 0 34 16 3 0 0 0 0.031062 1 31603 31603 54.774 27.89 1 5407800 6454 5968 4377 4478 7496 7496 0.031146936318691587 DPTAVGPVL 9 Unmodified _DPTAVGPVL_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7432556152344 2 434.742368 867.470183 0.92641 0.00040275 -0.81788 -0.00035557 0.10853 4.7184E-05 434.74234824889334 66.084 0.33123 59.908 59.805 60.137 -6.1757 30 18 2 0 0 0 0.012148 2 42964 42964;43109 74.423 24.279 1 11594000 6455 5968 4377 4478 7497;7498 7497 0.031146936318691587 DPTKILIGY 9 Unmodified _DPTKILIGY_ 0 0 0 ENSG00000131899|ENST00000316843|LLGL1;ENST00000479155.1_1_17:18137242-18138852:+|nuORF ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7931518554688 2 510.292225 1018.5699 -0.451 -0.00023014 0.75506 0.0003853 0.30406 0.00015516 510.29269817265134 60.908 0.34832 60.419 60.249 60.598 -0.48932 29 16 2 0 0 0 0.0086209 2 33144 33113;33144 89.401 41.055 1 11125000 6456 4358 4378 4479 7499;7500 7500 0.061355112458159056 DPTKILIGY 9 Unmodified _DPTKILIGY_ 0 0 0 ENSG00000131899|ENST00000316843|LLGL1;ENST00000479155.1_1_17:18137242-18138852:+|nuORF ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2929077148438 2 510.292225 1018.5699 0.50786 0.00025916 1.191 0.00060776 1.6989 0.00086692 510.2931202269088 67.517 0.52708 61.342 61.091 61.618 -6.1757 69 29 3 0 0 0 0.033587 2 43911 43911;44054 53.404 13.454 1 35335000 6457 4358 4378 4479 7501;7502 7501 0.061355112458159056 DPTKLELLY 9 Unmodified _DPTKLELLY_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3040161132812 2 546.30279 1090.59103 0.22372 0.00012222 -1.6359 -0.00089368 -1.4122 -0.00077146 546.301583473749 65.664 0.66655 65.664 65.143 65.81 0 73 27 4 0 0 0 0.023481 1 36562 36562 60.074 16.216 1 20496000 6458 7213 4379 4480 7503 7503 0.04935476554669549 DPTKLELLY 9 Unmodified _DPTKLELLY_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.30279 1090.59103 -0.061862 -3.3795E-05 -2.9257 -0.0015983 -2.9876 -0.0016321 546.30052906114 66.146 0.31377 65.663 65.478 65.792 -0.48323 -0.00054713 -0.0010996 NaN 60.074 45 16 4 NaN NaN NaN NaN 0 NaN NaN 0 19750000 6459 7213 4379 4480 0.04935476554669549 DPTTAYNLL 9 Unmodified _DPTTAYNLL_ 0 0 0 REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7411804199219 2 504.25584 1006.49713 0.48229 0.0002432 -2.7452 -0.0013843 -2.2629 -0.0011411 504.7552727792206 63.88 0.24197 63.88 63.732 63.974 0 15 9 2 0 0 0 0.19891 1 35675 35675 7.2892 1.0834 1 595550 + 6460 22057 4380 4481 7504 7504 -0.005862425476038879 DPTTVTKTF 9 Unmodified _DPTTVTKTF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2636108398438 2 505.263665 1008.51278 -0.013162 -6.6504E-06 -0.4488 -0.00022676 -0.46196 -0.00023341 505.26342815149417 35.238 0.24995 35.238 35.11 35.36 0 19 12 2 0 0 0 0.040683 1 18596 18596 49.554 11.379 1 4406800 6461 1249 4381 4482 7505 7505 0.008860439694444722 DPTTVTKTF 9 Unmodified _DPTTVTKTF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.2934265136719 2 505.263665 1008.51278 1.2562 0.00063469 2.0406 0.001031 3.2968 0.0016657 505.26460016619376 40.944 0.36725 36.337 36.1 36.467 -4.6079 36 22 2 0 0 0 0.060214 1 24507 24507 45.74 10.808 1 10304000 6462 1249 4381 4482 7506 7506 0.008860439694444722 DPTVGVDFF 9 Unmodified _DPTVGVDFF_ 0 0 0 ENSG00000179331|ENST00000320578|RAB39A;ENSG00000155961|ENST00000369454|RAB39B ENSG00000179331|ENST00000320578|RAB39A ENSG00000179331|ENST00000320578|RAB39A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.2389831542969 2 498.737283 995.460012 1.0701 0.00053371 0.088909 4.4342E-05 1.159 0.00057805 498.7379520727549 51.171 0.063705 45.522 45.479 45.543 -5.649 5 3 2 0 0 0 0.19891 1 32153 32153 7.2892 3.3448 1 12831000 6463 8828 4382 4483 7507 7507 -0.03789914093374591 DPVALQPYL 9 Unmodified _DPVALQPYL_ 0 0 0 REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2763366699219 2 508.276575 1014.5386 NaN NaN NaN NaN NaN NaN NaN 66.201 1 66.201 65.701 66.701 0 0 0 0 0.82739 1 36926 36926 4.3292 0 1 + 6464 20013 4383 4484 7508 7508 0.03190938211685079 DPVAYPKVQM 10 Unmodified _DPVAYPKVQM_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2003173828125 3 383.19872 1146.57433 NaN NaN NaN NaN NaN NaN NaN 18.739 1 18.739 18.239 19.239 0 0 0 0 0.99248 1 9337 9337 0.62683 0 1 6465 10472 4384 4485 7509 7509 0.00690652397042868 DPVCAPDELL 10 Unmodified _DPVCAPDELL_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.83984375 3 357.83908 1070.49541 1.3323 0.00047675 0.72722 0.00026023 2.0595 0.00073698 357.8392762753093 85.692 0.53665 79.517 79.292 79.829 -6.1757 53 30 2 0 0 0 0.62068 2 56390 56390;56524 5.7834 2.1964 1 31019000 + 6466 19145 4385 4486 7510;7511 7510 -0.03701619627895525 DPVCYISLL 9 Unmodified _DPVCYISLL_ 0 0 0 REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7624206542969 2 511.764986 1021.51542 0.66352 0.00033957 2.3496 0.0012024 3.0131 0.001542 511.7632422408078 46.486 0.38588 46.486 46.332 46.718 0 34 17 3 0 0 0 0.2001 1 25382 25382 23.148 2.2772 1 6337900 + 6467 29205 4386 4487 7512 7512 0.0055217610274667095 DPVCYISLL 9 Unmodified _DPVCYISLL_ 0 0 0 REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF REV__ENST00000594950.5_1_19:58865471-58865783:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.764986 1021.51542 0.66352 0.00033957 2.3496 0.0012024 3.0131 0.001542 511.7632422408078 46.486 0.38588 46.486 46.332 46.718 0 0 0 NaN 23.148 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6337900 + 6468 29205 4386 4487 0.0055217610274667095 DPVDQCQDSE 10 Unmodified _DPVDQCQDSE_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1 ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4903869628906 3 379.145121 1134.41353 -0.38293 -0.00014519 0.26237 9.9475E-05 -0.12057 -4.5712E-05 379.14502531345727 56.186 0.39664 56.186 56.028 56.424 0 26 18 3 0 0 0 0.23926 1 31348 31348 1.5923 0 1 2141000 6469 3120 4387 4488 7513 7513 -0.14829766777643272 DPVELRTEP 9 Unmodified _DPVELRTEP_ 0 0 0 REV__nc|ENSG00000112242|O00716-2|E2F3 REV__nc|ENSG00000112242|O00716-2|E2F3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2716674804688 2 528.272021 1054.52949 0.61077 0.00032265 0.81332 0.00042966 1.4241 0.00075231 528.2724386055222 85.729 0.55342 79.554 79.241 79.794 -6.1757 71 31 3 0 0 0 0.34134 1 56333 56333 15.248 1.7406 1 113880000 + 6470 18799 4388 4489 7514 7514 0.0044054485538254085 DPVEPHGEM 9 Oxidation (M) _DPVEPHGEM(Oxidation (M))_ DPVEPHGEM(1) DPVEPHGEM(120) 0 0 1 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.713134765625 2 513.713482 1025.41241 -0.44588 -0.00022905 -0.32964 -0.00016934 -0.77552 -0.0003984 513.713429554672 16.538 0.681 16.538 16.029 16.71 0 450 173 3 0 0 0 0.0055767 3 8101 7898;8001;8101 115.69 69.671 1 5075800 6471 4249 4389 4490 7515;7516;7517 7517 752 -0.0992793635587077 DPVEPHGEM 9 Oxidation (M) _DPVEPHGEM(Oxidation (M))_ DPVEPHGEM(1) DPVEPHGEM(130) 0 0 1 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7140502929688 2 513.713482 1025.41241 0.45766 0.00023511 -0.028395 -1.4587E-05 0.42927 0.00022052 513.7136857183715 17.895 0.4025 15.309 15.136 15.539 -2.5866 80 32 3 0 0 0 0.0018186 3 9409 9300;9409;9519 133.7 89.844 1 13433000 6472 4249 4389 4490 7518;7519;7520 7519 752 -0.0992793635587077 DPVEPHGEM 9 Unmodified _DPVEPHGEM_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7166748046875 2 505.716024 1009.4175 -0.0090218 -4.5625E-06 0.071234 3.6024E-05 0.062212 3.1462E-05 505.71602486933506 24.448 0.25872 24.448 24.293 24.551 0 29 13 3 0 0 0 0.042911 1 12462 12462 48.346 22.947 1 2611900 6473 4249 4389 4491 7521 7521 -0.0868363249325057 DPVEPHGEM 9 Unmodified _DPVEPHGEM_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7166748046875 2 505.716024 1009.4175 0.55371 0.00028002 -0.20732 -0.00010485 0.34639 0.00017517 505.71597311818596 28.293 0.40471 25.145 24.935 25.34 -3.1482 56 21 3 0 0 0 0.0095811 2 15676 15676;15797 81.613 45.486 1 51315000 6474 4249 4389 4491 7522;7523 7522 -0.0868363249325057 DPVEYSHTYL 10 Unmodified _DPVEYSHTYL_ 0 0 0 REV__nc|ENSG00000115425|Q9BY49-2|PECR REV__nc|ENSG00000115425|Q9BY49-2|PECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2828369140625 2 612.282586 1222.55062 0.57528 0.00035223 0.11029 6.7527E-05 0.68556 0.00041976 612.2821777356946 57.205 0.32756 57.205 57.043 57.371 0 21 14 2 0 0 0 0.6606 1 31778 31778 7.2892 0.56607 1 2619400 + 6475 18982 4390 4492 7524 7524 -0.05175489835755798 DPVFPTTGY 9 Unmodified _DPVFPTTGY_ 0 0 0 nc|ENSG00000106565|Q3YBM2-2|TMEM176B;ENSG00000106565|ENST00000326442|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B nc|ENSG00000106565|Q3YBM2-2|TMEM176B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7363586425781 2 498.737283 995.460012 0.48884 0.0002438 0.228 0.00011371 0.71684 0.00035751 498.73720541360257 58.011 0.2337 58.011 57.869 58.103 0 13 9 2 0 0 0 0.30562 1 32313 32313 16.942 6.7589 1 1065700 6476 2439 4391 4493 7525 7525 -0.03789914093374591 DPVGDIVSF 9 Unmodified _DPVGDIVSF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.4684448242188 1 948.467289 947.460012 -0.0092598 -8.7826E-06 1.539 0.0014597 1.5297 0.0014509 948.468667034443 73.648 0.45554 73.648 73.4 73.856 0 64 20 4 0 0 0 0.0082281 3 41003 40905;41003;41107 92.822 40.558 1 18373000 6477 2945 4392 4494 7526;7527;7528 7527 -0.015819140933786002 DPVGDIVSF 9 Unmodified _DPVGDIVSF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7383117675781 2 474.737283 947.460012 0.63217 0.00030011 0.51069 0.00024244 1.1429 0.00054256 474.73765413622493 73.672 0.37591 73.672 73.454 73.83 0 44 16 3 0 0 0 0.031062 2 41020 40922;41020 54.774 26.287 1 4674200 6478 2945 4392 4494 7529;7530 7530 -0.015819140933786002 DPVGDIVSF 9 Unmodified _DPVGDIVSF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 948.4691162109375 1 948.467289 947.460012 0.63083 0.00059832 0.98922 0.00093824 1.6201 0.0015366 948.4685307771543 74.192 0.26955 73.716 73.57 73.84 -0.47588 18 10 2 0 0 0 0.07916 2 40574 40574;40668 37.974 16.227 1 896290 6479 2945 4392 4494 7531;7532 7531 -0.015819140933786002 DPVGDIVSF 9 Unmodified _DPVGDIVSF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.4683837890625 1 948.467289 947.460012 0.38088 0.00036125 0.15848 0.00015031 0.53935 0.00051156 948.4673315300125 83.003 0.57513 76.827 76.521 77.096 -6.1757 76 31 3 0 0 0 0.0082281 3 54669 54393;54521;54669 92.822 41.967 1 56661000 6480 2945 4392 4494 7533;7534;7535 7535 -0.015819140933786002 DPVGDIVSF 9 Unmodified _DPVGDIVSF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7380676269531 2 474.737283 947.460012 0.805 0.00038216 -0.8841 -0.00041972 -0.079104 -3.7554E-05 474.73721662481717 82.965 0.50293 76.789 76.521 77.024 -6.1757 58 27 3 0 0 0 0.019303 2 54441 54441;54570 64.236 35.749 1 42830000 6481 2945 4392 4494 7536;7537 7536 -0.015819140933786002 DPVGYGIPY 9 Unmodified _DPVGYGIPY_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.473388671875 1 980.472374 979.465098 -0.0022645 -2.2203E-06 1.2417 0.0012174 1.2394 0.0012152 980.4742653381444 62.056 0.19258 62.056 61.929 62.122 0 10 7 2 0 0 0 0.070838 1 34592 34592 39.957 26.449 1 697490 6482 7676 4393 4495 7538 7538 -0.025456102307657602 DPVGYGIPY 9 Unmodified _DPVGYGIPY_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7407531738281 2 490.739825 979.465098 0.097075 4.7638E-05 0.30401 0.00014919 0.40108 0.00019683 490.7400243056824 62.058 0.23737 62.058 61.929 62.167 0 16 9 2 0 0 0 0.16226 1 34599 34599 26.884 6.0124 1 1948200 6483 7676 4393 4495 7539 7539 -0.025456102307657602 DPVHAVVY 8 Unmodified _DPVHAVVY_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2351684570312 2 450.23471 898.454868 0.65022 0.00029275 -0.21376 -9.6243E-05 0.43646 0.00019651 450.2345666651852 39.02 0.3678 39.02 38.834 39.202 0 47 16 4 0 0 0 0.31612 2 20840 20840;20948 53.576 21.459 1 13491000 6484 801 4394 4496 7540;7541 7540 0.001578268346634104 DPVHCLLPY 9 Unmodified _DPVHCLLPY_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7645263671875 2 528.762778 1055.511 0.39638 0.00020959 2.168 0.0011464 2.5644 0.001356 528.7646045433327 80.022 0.4973 80.022 79.819 80.316 0 64 25 3 0 0 0 0.12841 2 44474 44378;44474 30.225 1.4018 1 10432000 6485 16109 4395 4497 7542;7543 7543 -0.014532883201809454 DPVHCLLPY 9 Unmodified _DPVHCLLPY_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2982788085938 2 528.762778 1055.511 0.78969 0.00041756 1.2884 0.00068125 2.0781 0.0010988 528.7641673095675 80.605 0.34251 80.112 79.929 80.271 -0.49247 18 13 2 0 0 0 0.21242 1 44201 44201 5.2307 0.90143 1 950720 6486 16109 4395 4497 7544 7544 -0.014532883201809454 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.3001098632812 2 523.30005 1044.58555 0.45348 0.00023731 -0.64556 -0.00033782 -0.19207 -0.00010051 523.299612012345 92.343 0.83173 92.343 92.056 92.888 0 194 58 5 0 0 0 0.013323 5 51136 50940;51038;51136;51241;51344 71.134 37.031 1 83926000 6487 2314 4396 4498 7545;7546;7547;7548;7549 7547 0.06503797762843533 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2993774414062 2 523.30005 1044.58555 0.31535 0.00016503 -1.0885 -0.00056962 -0.77316 -0.0004046 523.2992905619575 92.885 0.73271 92.427 92.129 92.862 -0.45741 147 36 5 0 0 0 0.022193 4 50743 50646;50743;50842;50936 61.357 27.255 1 327210000 6488 2314 4396 4498 7550;7551;7552;7553 7551 0.06503797762843533 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.3005981445312 2 523.30005 1044.58555 0.30853 0.00016146 1.3167 0.000689 1.6252 0.00085046 523.300726480685 93.49 0.65234 93.033 92.836 93.489 -0.4574 67 28 3 0 0 0 0.46501 1 51221 51221 9.3831 3.1773 1 2345800 6489 2314 4396 4498 7554 7554 0.06503797762843533 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.300048828125 2 523.30005 1044.58555 NaN NaN NaN NaN NaN NaN NaN 93.93 1 93.51 93.01 94.01 -0.42044 0 0 0 0.67877 1 51321 51321 10.074 6.4774 1 6490 2314 4396 4498 7555 7555 0.06503797762843533 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.30078125 2 523.30005 1044.58555 1.4164 0.00074122 -0.4722 -0.0002471 0.94422 0.00049411 523.2997032300234 92.415 0.51524 92.445 92.184 92.7 0.030197 64 19 4 0 0 0 0.0082281 2 51314 51314;51411 92.822 22.107 1 49155000 6491 2314 4396 4498 7556;7557 7556 0.06503797762843533 DPVILNVLY 9 Unmodified _DPVILNVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.301025390625 2 523.30005 1044.58555 0.58104 0.00030406 0.1287 6.7347E-05 0.70974 0.00037141 523.3000157904082 99.896 0.58176 93.72 93.432 94.014 -6.1757 93 39 3 0 0 0 0.013323 1 66553 66553 71.134 37.031 1 2548200000 6492 2314 4396 4498 7558 7558 0.06503797762843533 DPVKGFAEY 9 Unmodified _DPVKGFAEY_ 0 0 0 nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.253662109375 2 513.250557 1024.48656 0.15979 8.2011E-05 2.0775 0.0010663 2.2373 0.0011483 513.2518401558408 42.109 0.24905 42.109 42.011 42.26 0 30 12 3 0 0 0 0.033587 1 22757 22757 53.404 28.73 1 19264000 6493 8527 4397 4499 7559 7559 -0.024702252020460946 DPVKGFAEY 9 Unmodified _DPVKGFAEY_ 0 0 0 nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2496948242188 2 513.250557 1024.48656 0.7104 0.00036461 0.62691 0.00032176 1.3373 0.00068637 513.2508007014724 48.298 0.29097 43.064 42.851 43.142 -5.2339 35 16 3 0 0 0 0.015688 1 29996 29996 67.838 46.301 1 20843000 6494 8527 4397 4499 7560 7560 -0.024702252020460946 DPVKPPGSSL 10 Unmodified _DPVKPPGSSL_ 0 0 0 ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1 ENSG00000109458|ENST00000262994|GAB1 ENSG00000109458|ENST00000262994|GAB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7712097167969 2 498.771657 995.528761 0.58847 0.00029351 -0.94078 -0.00046923 -0.35231 -0.00017572 498.77113927745467 38.794 0.26852 34.343 34.237 34.506 -4.4509 29 16 2 0 0 0 0.010233 1 22952 22952 87.258 47.301 1 12984000 6495 2650 4398 4500 7561 7561 0.030817502063428037 DPVLREIPE 9 Unmodified _DPVLREIPE_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2908935546875 2 534.290214 1066.56587 0.2916 0.0001558 1.1785 0.00062967 1.4701 0.00078547 534.2907033354647 92.373 0.40664 92.373 92.163 92.569 0 80 30 3 0 0 0 0.18144 1 51084 51084 24.991 2.2547 1 4088700 6496 8268 4399 4501 7562 7562 0.03525421752078728 DPVLREIPE 9 Unmodified _DPVLREIPE_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2908325195312 2 534.290214 1066.56587 0.36417 0.00019457 0.97893 0.00052304 1.3431 0.00071761 534.2905588480152 92.892 0.49564 92.434 92.211 92.707 -0.4574 69 25 4 0 0 0 0.18144 1 50710 50710 24.991 2.2547 1 16475000 6497 8268 4399 4501 7563 7563 0.03525421752078728 DPVNLQKFSY 10 Unmodified _DPVNLQKFSY_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8089599609375 2 605.808771 1209.60299 0.21844 0.00013233 -0.93096 -0.00056398 -0.71252 -0.00043165 605.8080249906571 55.065 0.18007 54.587 54.491 54.671 -0.47798 16 8 2 0 0 0 0.1028 1 29873 29873 46.022 33.782 1 1568200 6498 6563 4400 4502 7564 7564 0.006570932978547717 DPVPKPKP 8 Unmodified _DPVPKPKP_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MSMS AL20221201_MKP_PDAC_01 4 439.2599182128906 2 439.260728 876.506903 NaN NaN NaN NaN NaN NaN NaN 26.139 1 23.188 22.688 23.688 -2.9511 0 0 0 0.88073 1 14370 14370 19.439 0 1 6499 2333 4401 4503 7565 7565 0.06370990248422004 DPVRLTQLY 9 Unmodified _DPVRLTQLY_ 0 0 0 ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF;ENSG00000149781|ENST00000345728|FERMT3;nc|ENSG00000149781|Q86UX7|FERMT3 ENST00000546255.1_1_11:63979177-63987262:+|nuORF ENST00000546255.1_1_11:63979177-63987262:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3092041015625 2 552.806031 1103.59751 1.2744 0.00070449 1.1916 0.00065875 2.466 0.0013632 553.3078416706218 96.795 0.50713 90.619 90.37 90.877 -6.1757 115 29 5 0 0 0 0.11005 1 64246 64246 27.629 0 1 601530000 6500 6035 4402 4504 7566 7566 0.04985414506040797 DPVSIIQKY 9 Unmodified _DPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7952880859375 2 531.795132 1061.57571 0.075002 3.9886E-05 0.90643 0.00048204 0.98143 0.00052192 531.7960451201874 52.252 0.33726 52.252 52.039 52.376 0 26 14 2 0 0 0 0.020973 1 28942 28942 62.573 43.316 1 3077400 6501 9795 4403 4505 7567 7567 0.04738609757487211 DPVSIIQKY 9 Unmodified _DPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2963256835938 2 531.795132 1061.57571 0.32687 0.00017383 0.80081 0.00042586 1.1277 0.00059969 531.7955580727576 52.807 0.27782 52.355 52.198 52.476 -0.45173 30 13 3 0 0 0 0.0086904 1 28526 28526 107.19 67.23 1 3929800 6502 9795 4403 4505 7568 7568 0.04738609757487211 DPVSIIQKY 9 Unmodified _DPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7957763671875 2 531.795132 1061.57571 1.1106 0.00059064 0.14137 7.5178E-05 1.252 0.00066581 531.7947909286247 59.239 0.34147 53.164 52.953 53.295 -6.0745 39 18 3 0 0 0 0.00035873 1 37973 37973 147.06 94.791 1 21108000 6503 9795 4403 4505 7569 7569 0.04738609757487211 DPVSTELIY 9 Unmodified _DPVSTELIY_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7649536132812 2 518.763497 1035.51244 0.30436 0.00015789 2.462 0.0012772 2.7663 0.0014351 518.7651147114284 62.738 0.48344 62.738 62.569 63.053 0 38 20 2 0 0 0 0.038285 1 35000 35000 50.855 20.63 1 18586000 6504 7937 4404 4506 7570 7570 -0.003893757504329187 DPVTALPFPD 10 Unmodified _DPVTALPFPD_ 0 0 0 ENST00000604760.1_1_15:67834762-67834924:-|nuORF ENST00000604760.1_1_15:67834762-67834924:-|nuORF ENST00000604760.1_1_15:67834762-67834924:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.271240234375 2 536.27149 1070.52843 0.047879 2.5676E-05 -1.2558 -0.00067344 -1.2079 -0.00064777 536.2701212371443 70.271 0.26022 69.792 69.653 69.914 -0.47903 16 11 2 0 0 0 0.63399 1 38431 38431 9.3831 1.7742 1 705560 6505 15842 4405 4507 7571 7571 -0.0040166951350784075 DPVTIDCGHVF 11 Carbamidomethyl (C) _DPVTIDC(Carbamidomethyl (C))GHVF_ DPVTIDC(1)GHVF DPVTIDC(82)GHVF 0 1 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.2891235351562 2 630.289888 1258.56522 0.91373 0.00057592 -0.29364 -0.00018508 0.62009 0.00039084 630.2898415705959 54.561 0.34018 54.561 54.375 54.715 0 45 14 4 0 0 0 0.0011251 2 30242 30242;30347 81.89 55.622 1 12427000 6506 10632 4406 4508 7572;7573 7572 945 -0.053717409592991316 DPVTIDCGHVF 11 Carbamidomethyl (C) _DPVTIDC(Carbamidomethyl (C))GHVF_ DPVTIDC(1)GHVF DPVTIDC(63)GHVF 0 1 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.2915649414062 2 630.289888 1258.56522 0.052172 3.2884E-05 1.0699 0.00067438 1.1221 0.00070726 630.2908481607067 55.151 0.2722 54.673 54.548 54.82 -0.47798 22 12 2 0 0 0 0.014934 1 29909 29909 62.573 36.305 1 3418400 6507 10632 4406 4508 7574 7574 945 -0.053717409592991316 DPVTIDCGHVF 11 Carbamidomethyl (C) _DPVTIDC(Carbamidomethyl (C))GHVF_ DPVTIDC(1)GHVF DPVTIDC(170)GHVF 0 1 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.2913818359375 2 630.289888 1258.56522 0.48999 0.00030884 -0.1654 -0.00010425 0.32459 0.00020459 630.2899101755494 61.938 0.41245 55.762 55.537 55.95 -6.1757 46 22 3 0 0 0 1.8016E-36 2 39875 39875;40004 174.73 148.46 1 46201000 6508 10632 4406 4508 7575;7576 7575 945 -0.053717409592991316 DPVTIECGHN 10 Unmodified _DPVTIECGHN_ 0 0 0 ENSG00000250374|ENST00000503032|TRIM75 ENSG00000250374|ENST00000503032|TRIM75 ENSG00000250374|ENST00000503032|TRIM75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.739501953125 2 542.740031 1083.46551 0.21832 0.00011849 -0.86199 -0.00046784 -0.64366 -0.00034934 542.7394716140291 76.966 0.45287 76.966 76.708 77.161 0 54 29 2 0 0 0 0.69377 1 42810 42810 3.5965 0.31518 1 5698300 6509 10751 4407 4509 7577 7577 -0.07288558573213777 DPVTLDVLY 9 Unmodified _DPVTLDVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41720208-41729184|39|18.69|0.61|4.94|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7742309570312 2 517.773865 1033.53318 0.31329 0.00016221 -0.40649 -0.00021047 -0.093201 -4.8257E-05 517.773542530639 80.022 1.0538 80.022 79.566 80.62 0 159 51 5 0 0 0 0.010877 4 44373 44373;44469;44570;44746 77.984 41.94 1 130260000 6510 2314 4408 4510 7578;7579;7580;7581 7578 0.017752146292423276 DPVTLDVLY 9 Unmodified _DPVTLDVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41720208-41729184|39|18.69|0.61|4.94|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7750244140625 2 517.773865 1033.53318 0.78872 0.00040838 0.17287 8.9507E-05 0.96159 0.00049789 517.7736809621406 80.619 0.72833 80.126 79.853 80.582 -0.49247 81 30 4 0 0 0 0.016184 2 44069 44069;44169 67.344 37.119 1 11543000 6511 2314 4408 4510 7582;7583 7582 0.017752146292423276 DPVTLDVLY 9 Unmodified _DPVTLDVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41720208-41729184|39|18.69|0.61|4.94|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7740478515625 2 517.773865 1033.53318 0.15108 7.8225E-05 -0.068979 -3.5716E-05 0.082101 4.2509E-05 517.7733396210712 80.084 0.22737 80.142 79.957 80.185 0.057587 18 9 3 0 0 0 0.016184 1 44218 44218 67.344 37.119 1 5924100 6512 2314 4408 4510 7584 7584 0.017752146292423276 DPVTLDVLY 9 Unmodified _DPVTLDVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41720208-41729184|39|18.69|0.61|4.94|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7733764648438 2 517.773865 1033.53318 1.1232 0.00058156 -1.0054 -0.00052057 0.11779 6.0989E-05 517.7732503931003 88.992 0.96096 82.816 82.221 83.182 -6.1757 175 53 4 0 0 0 0.010877 3 58603 58603;58724;58846 77.984 47.76 1 303400000 6513 2314 4408 4510 7585;7586;7587 7585 0.017752146292423276 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2817993164062 2 517.281857 1032.54916 0.30191 0.00015617 -2.2102 -0.0011433 -1.9083 -0.00098711 517.2819446281919 77.591 0.70563 77.591 77.538 78.244 0 55 35 3 0 0 0 0.52067 1 43212 43212 6.2058 1.8765 1 1057700 6514 1437;3789;10337 4409 4511 7588 7588 0.03418920866147346 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2807006835938 2 517.281857 1032.54916 -0.72063 -0.00037277 -0.30329 -0.00015689 -1.0239 -0.00052966 517.2815374113034 77.491 0.71118 77.008 76.721 77.432 -0.4826 131 34 6 0 0 0 0.008678 4 42413 42310;42413;42518;42623 88.904 40.558 1 522290000 6515 1437;3789;10337 4409 4511 7589;7590;7591;7592 7590 0.03418920866147346 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.281494140625 2 517.281857 1032.54916 -0.67008 -0.00034662 -2.972 -0.0015373 -3.642 -0.001884 517.7811219602529 78.133 0.35641 77.65 77.535 77.891 -0.4826 40 16 4 0 0 0 0.28023 1 42761 42761 18.146 7.3224 1 1919400 6516 1437;3789;10337 4409 4511 7593 7593 0.03418920866147346 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2819213867188 2 517.281857 1032.54916 0.1984 0.00010263 0.24592 0.00012721 0.44432 0.00022984 517.2819427559151 77.013 0.52234 77.064 76.824 77.346 0.050102 76 21 5 0 0 0 0.010818 2 42520 42413;42520 78.149 29.804 1 50316000 6517 1437;3789;10337 4409 4511 7594;7595 7595 0.03418920866147346 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2818603515625 2 517.281857 1032.54916 0.62602 0.00032383 -0.58701 -0.00030365 0.039014 2.0181E-05 517.2813637516053 85.698 1.1297 79.522 79.153 80.283 -6.1757 218 64 5 0 0 0 0.010818 5 56245 56245;56372;56498;56629;56763 78.149 38.192 1 3032399999.9999995 6518 1437;3789;10337 4409 4511 7596;7597;7598;7599;7600 7596 0.03418920866147346 DPVTLNVLY 9 Unmodified _DPVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.281857 1032.54916 0.30191 0.00015617 -2.2102 -0.0011433 -1.9083 -0.00098711 517.2819446281919 77.591 0.70563 77.591 77.538 78.244 0 -0.029771 0.00023009 NaN 18.146 55 35 3 NaN NaN NaN NaN 0 NaN NaN 0 1057700 6519 1437;3789;10337 4409 4511 0.03418920866147346 DPVTLNVTYG 10 Unmodified _DPVTLNVTYG_ 0 0 0 nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7745361328125 2 539.774396 1077.53424 0.24502 0.00013226 -0.14718 -7.9444E-05 0.097842 5.2813E-05 539.7742616909768 93.528 0.37534 93.528 93.336 93.711 0 50 20 3 0 0 0 0.024115 2 51722 51628;51722 71.922 43.435 1 3040900 6520 1275 4410 4512 7601;7602 7602 -0.001425710018565951 DPVTLNVTYG 10 Unmodified _DPVTLNVTYG_ 0 0 0 nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7739868164062 2 539.774396 1077.53424 0.25168 0.00013585 -0.6774 -0.00036564 -0.42572 -0.00022979 539.7738807334772 94.056 0.53859 93.635 93.37 93.908 -0.42044 90 28 4 0 0 0 0.024115 2 51385 51285;51385 71.922 43.435 1 15803000 6521 1275 4410 4512 7603;7604 7604 -0.001425710018565951 DPVTLNVTYG 10 Unmodified _DPVTLNVTYG_ 0 0 0 nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 nc|ENSG00000079385|P13688-3|CEACAM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.8191528320312 2 539.774396 1077.53424 1.1742 0.00063382 0.38216 0.00020628 1.5564 0.0008401 539.7748693250626 100.15 0.278 93.973 93.78 94.058 -6.1757 32 17 3 0 0 0 0.10417 1 66861 66861 45.7 20.3 1 33776000 6522 1275 4410 4512 7605 7605 -0.001425710018565951 DPVTVSFPVA 10 Unmodified _DPVTVSFPVA_ 0 0 0 REV__ENST00000587974.1_1_18:43487913-43547205:-|nuORF REV__ENST00000587974.1_1_18:43487913-43547205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2742919921875 2 516.274032 1030.53351 0.27447 0.0001417 0.61578 0.00031791 0.89026 0.00045962 516.2743702412766 87.592 0.34288 87.592 87.419 87.762 0 24 15 2 0 0 0 0.69377 1 48468 48468 3.5965 1.019 1 640860 + 6523 21108 4411 4513 7606 7606 0.01946634349087617 DPVVARSVY 9 Unmodified _DPVVARSVY_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2720336914062 2 503.271824 1004.5291 -0.18785 -9.4541E-05 0.32882 0.00016549 0.14097 7.0947E-05 503.2720647483148 34.685 0.27017 34.685 34.54 34.81 0 39 13 4 0 0 0 0.2324 1 18354 18354 20.415 1.0526 1 17396000 6524 6277 4412 4514 7607 7607 0.02701169926183411 DPVVVGAEGQI 11 Unmodified _DPVVVGAEGQI_ 0 0 0 REV__nc|ENSG00000065154|P04181-2|OAT REV__nc|ENSG00000065154|P04181-2|OAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2870483398438 2 542.287671 1082.56079 0.2805 0.00015211 1.0167 0.00055134 1.2972 0.00070345 542.2878581066584 87.355 0.23804 86.851 86.708 86.946 -0.50423 16 9 2 0 0 0 0.66428 1 47765 47765 7.609 0.31972 1 502530 + 6525 17371 4413 4515 7608 7608 0.022811178894926343 DPVYFMER 8 Unmodified _DPVYFMER_ 0 0 0 nc|ENSG00000173805|P54257-3|HAP1;nc|ENSG00000173805|P54257-4|HAP1;ENSG00000173805|ENST00000347901|HAP1;nc|ENSG00000173805|P54257|HAP1 nc|ENSG00000173805|P54257-3|HAP1 nc|ENSG00000173805|P54257-3|HAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7433471679688 2 528.744585 1055.47462 -0.018531 -9.7982E-06 -4.2539 -0.0022492 -4.2725 -0.002259 528.7426437163753 22.526 0.16765 22.526 22.402 22.57 0 14 7 3 0 0 0 0.80722 1 11438 11438 2.3027 0 1 624350 6526 8364 4414 4516 7609 7609 -0.05090165216893183 DPVYIITEL 9 Unmodified _DPVYIITEL_ 0 0 0 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2908325195312 2 531.789515 1061.56448 0.34065 0.00018116 -0.82877 -0.00044073 -0.48811 -0.00025957 531.7892203527425 90.199 0.40789 90.199 89.967 90.375 0 39 27 2 0 0 0 0.49766 2 49942 49838;49942 11.64 6.0679 1 1685800 6527 1934 4415 4517 7610;7611 7611 0.03615787663306946 DPWFNKYEF 9 Unmodified _DPWFNKYEF_ 0 0 0 ENST00000472152.5_1_1:79120733-79120823:+|nuORF ENST00000472152.5_1_1:79120733-79120823:+|nuORF ENST00000472152.5_1_1:79120733-79120823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.2830810546875 2 623.282389 1244.55022 0.57982 0.00036139 -1.2245 -0.00076322 -0.6447 -0.00040183 623.2807479029461 72.68 0.21582 72.204 72.102 72.318 -0.47588 19 9 3 0 0 0 0.033587 1 39778 39778 53.404 37.255 1 1449500 6528 13896 4416 4518 7612 7612 -0.06226864764971651 DPWGYYIDY 9 Unmodified _DPWGYYIDY_ 0 0 0 ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2538452148438 2 596.253297 1190.49204 0.052543 3.1329E-05 1.6892 0.0010072 1.7417 0.0010385 596.254061052952 79.65 0.13972 79.65 79.546 79.686 0 8 5 2 0 0 0 0.55144 1 44222 44222 4.3292 1.44 1 334120 6529 4719 4417 4519 7613 7613 -0.09558546410221425 DPWGYYIDY 9 Unmodified _DPWGYYIDY_ 0 0 0 ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2539672851562 2 596.253297 1190.49204 0.99348 0.00059237 0.80948 0.00048265 1.803 0.001075 596.2537680592029 80.251 0.31669 79.762 79.64 79.957 -0.48933 26 12 3 0 0 0 0.43463 1 43941 43941 10.824 4.6181 1 807380 6530 4719 4417 4519 7614 7614 -0.09558546410221425 DPWGYYIDY 9 Unmodified _DPWGYYIDY_ 0 0 0 ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2529296875 2 596.253297 1190.49204 0.87353 0.00052084 0.50359 0.00030027 1.3771 0.00082111 596.2532431930246 88.24 0.2795 82.065 81.889 82.168 -6.1757 23 15 2 0 0 0 0.031062 1 58172 58172 54.774 36.627 1 11411000 6531 4719 4417 4519 7615 7615 -0.09558546410221425 DPWIGKLLY 9 Unmodified _DPWIGKLLY_ 0 0 0 ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.80859375 2 552.808042 1103.60153 0.7852 0.00043406 0.092721 5.1257E-05 0.87792 0.00048532 552.8080218881129 82.225 0.44316 81.73 81.498 81.941 -0.4952 61 17 5 0 0 0 0.012668 2 45046 44948;45046 72.968 40.635 1 18124000 6532 4178 4418 4520 7616;7617 7617 0.05387503999759247 DPWIGKLLY 9 Unmodified _DPWIGKLLY_ 0 0 0 ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8086547851562 2 552.808042 1103.60153 1.6499 0.00091207 0.22982 0.00012705 1.8797 0.0010391 552.8079872355158 81.538 0.84151 81.598 81.138 81.979 0.059929 76 32 4 0 0 0 0.0094097 2 45121 45019;45121 82.529 54.042 1 99942000 6533 4178 4418 4520 7618;7619 7619 0.05387503999759247 DPYEIIESF 9 Unmodified _DPYEIIESF_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7630004882812 2 556.760955 1111.50736 NaN NaN NaN NaN NaN NaN NaN 87.583 1 87.583 87.083 88.083 0 0 0 0 0.82739 1 48495 48495 4.3292 1.7518 1 6534 5007 4419 4521 7620 7620 -0.04393679613031054 DPYGWYSI 8 Unmodified _DPYGWYSI_ 0 0 0 REV__ENSG00000204022|ENST00000371939|LIPJ REV__ENSG00000204022|ENST00000371939|LIPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7230834960938 2 500.724175 999.433798 -0.15371 -7.6965E-05 -0.3265 -0.00016348 -0.4802 -0.00024045 500.72390733826046 25.586 0.35199 25.586 25.427 25.779 0 45 16 4 0 0 0 0.80143 1 13220 13220 5.7604 0.52976 1 4091700 + 6535 24136 4420 4522 7621 7621 -0.06594183264860476 DPYIWQSF 8 Unmodified _DPYIWQSF_ 0 0 0 ENST00000558403.1_1_5:50674766-50675482:-|nuORF;ENST00000559112.2_1_5:50674766-50679009:-|nuORF ENST00000558403.1_1_5:50674766-50675482:-|nuORF ENST00000558403.1_1_5:50674766-50675482:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2431640625 2 528.245275 1054.476 -0.20146 -0.00010642 -2.1557 -0.0011387 -2.3572 -0.0012452 528.2442320537605 26.446 0.37627 26.446 26.343 26.719 0 23 17 3 0 0 0 0.79669 1 13712 13712 8.5933 1.304 1 884460 6536 15277 4421 4523 7622 7622 -0.049062078564929834 DPYLDDIDDE 10 Unmodified _DPYLDDIDDE_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8427734375 2 605.243323 1208.47209 0.3539 0.00021419 -0.65625 -0.00039719 -0.30235 -0.00018299 605.7441812142221 72.035 0.19426 72.074 71.954 72.149 0.039032 15 9 2 0 0 0 0.23986 1 39689 39689 1.6526 0 1 2151400 6537 8194 4422 4524 7623 7623 -0.1238038693152248 DPYLLRECAL 10 Unmodified _DPYLLRECAL_ 0 0 0 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 REV__nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.205810546875 3 398.205875 1191.59579 -0.47199 -0.00018795 0.99158 0.00039485 0.51959 0.0002069 398.54064387626494 25.018 0.18841 25.018 24.979 25.168 0 31 16 3 0 0 0 0.69064 1 12839 12839 1.9064 0 1 1564100 + 6538 21948 4423 4525 7624 7624 0.007660374257739022 DPYQLELPA 9 Unmodified _DPYQLELPA_ 0 0 0 ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3 ENST00000486056.1_1_9:35733177-35736720:+|nuORF ENST00000486056.1_1_9:35733177-35736720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2636108398438 2 523.263665 1044.51278 0.40488 0.00021186 -0.18272 -9.5608E-05 0.22216 0.00011625 523.2634888748998 37.33 0.14989 37.33 37.259 37.409 0 10 7 2 0 0 0 0.36964 1 19864 19864 13.906 0.86358 1 1870400 6539 2479 4424 4526 7625 7625 -0.0076995603058094275 DPYQRIMINF 10 Unmodified _DPYQRIMINF_ 0 0 0 nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1;ENST00000374875.5_1_10:33552797-33623406:-|nuORF nc|ENSG00000099250|O14786-3|NRP1 nc|ENSG00000099250|O14786-3|NRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8840026855469 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 56.073 1 55.587 55.087 56.087 -0.48554 0 0 0 0.9997 1 30436 30436 0.69767 0 1 6540 1689 4425 4527 7626 7626 -0.002748713086020871 DPYRLGHDAY 10 Unmodified _DPYRLGHDAY_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON nc|ENSG00000159140|P18583-7|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.8558654785156 3 402.856122 1205.54654 -0.64833 -0.00026118 0.77596 0.0003126 0.12763 5.1418E-05 402.85640289820066 30.654 0.26822 30.654 30.503 30.771 0 26 12 3 0 0 0 0.63089 1 15927 15927 9.544 6.4717 1 2029100 6541 6628 4426 4528 7627 7627 -0.04801534538796659 DPYRLGHDAY 10 Unmodified _DPYRLGHDAY_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON nc|ENSG00000159140|P18583-7|SON nc|ENSG00000159140|P18583-7|SON MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 402.856122 1205.54654 0.95129 0.00038323 0.49936 0.00020117 1.4506 0.0005844 402.85632223235814 34.651 0.21236 30.556 30.419 30.632 -4.0951 -0.049188 -0.00017396 NaN 9.544 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 9138000 6542 6628 4426 4528 -0.04801534538796659 DQAHTLKYC 9 Unmodified _DQAHTLKYC_ 0 0 0 ENSG00000188425|ENST00000341294|NANOS2 ENSG00000188425|ENST00000341294|NANOS2 ENSG00000188425|ENST00000341294|NANOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.756591796875 2 539.752941 1077.49133 0.22445 0.00012115 1.0305 0.00055619 1.2549 0.00067734 539.7561707166471 42.148 0.48093 42.148 41.901 42.382 0 36 24 3 0 0 0 0.34999 1 22712 22712 14.838 0 1 11737000 6543 9658 4427 4529 7628 7628 -0.04431664330923013 DQAVDREQPA 10 Unmodified _DQAVDREQPA_ 0 0 0 REV__ENSG00000110427|ENST00000658780|KIAA1549L REV__ENSG00000110427|ENST00000658780|KIAA1549L MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.767822265625 2 564.767634 1127.52072 0.015235 8.604E-06 1.2963 0.00073208 1.3115 0.00074068 565.270362772068 25.58 0.23277 22.697 22.549 22.782 -2.8831 20 12 2 0 0 0 0.14688 1 14021 14021 40.239 10.014 1 3508200 + 6544 18708 4428 4530 7629 7629 -0.03794428781111492 DQCNDLATDW 10 Unmodified _DQCNDLATDW_ 0 0 0 REV__ENSG00000142528|ENST00000270617|ZNF473 REV__ENSG00000142528|ENST00000270617|ZNF473 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.7348022460938 2 590.732403 1179.45025 NaN NaN NaN NaN NaN NaN NaN 5.1822 1 5.1833 4.6833 5.6833 0.0010915 0 0 0 1.0047 1 2612 2612 0 0 1 + 6545 20577 4429 4531 7630 7630 -0.13229470161081736 DQCREILKY 9 Carbamidomethyl (C) _DQC(Carbamidomethyl (C))REILKY_ DQC(1)REILKY DQC(51)REILKY 0 1 0 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11 ENST00000487682.5_1_1:156909888-156915005:-|nuORF;ENSG00000132694|ENST00000368194|ARHGEF11 ENSG00000132694|ENST00000368194|ARHGEF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3072509765625 2 612.805705 1223.59686 1.1516 0.00070568 0.48405 0.00029663 1.6356 0.0010023 612.806596704297 37.482 0.47617 33.198 32.974 33.45 -4.2835 37 28 2 0 0 0 0.037253 1 21978 21978 51.415 20.147 1 6245400 6546 14208;4441 4430 4532 7631 7631 459 -0.005997482053089698 DQDAADADA 9 Unmodified _DQDAADADA_ 0 0 0 REV__nc|ENSG00000146926|Q8WXI3-2|ASB10 REV__nc|ENSG00000146926|Q8WXI3-2|ASB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.1697998046875 2 446.169961 890.325369 0.39792 0.00017754 -0.69754 -0.00031122 -0.29962 -0.00013368 446.16950968328376 38.265 1.2439 38.282 37.46 38.703 0.01704 166 59 4 0 0 0 0.62242 3 20053 20053;20289;20389 0 0 1 83812000 + 6547 20855 4431 4533 7632;7633;7634 7632 -0.12418019305960115 DQDELALFYFQ 11 Unmodified _DQDELALFYFQ_ 0 0 0 ENST00000379887.8_2_15:72877639-72878143:+|nuORF ENST00000379887.8_2_15:72877639-72878143:+|nuORF ENST00000379887.8_2_15:72877639-72878143:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.1746826171875 2 694.822075 1387.6296 0.32672 0.00022701 -1.0092 -0.00070123 -0.6825 -0.00047422 695.323157601826 94.151 0.19397 93.731 93.616 93.81 -0.42044 13 11 2 0 0 0 0.7187 1 51426 51426 2.4985 0.84587 1 714350 6548 12580 4432 4534 7635 7635 -0.04871262601500348 DQDKARVEV 9 Unmodified _DQDKARVEV_ 0 0 0 REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2745971679688 2 530.275095 1058.53564 -0.46487 -0.00024651 -0.94392 -0.00050054 -1.4088 -0.00074704 530.7757922864374 55.572 0.22138 55.572 55.389 55.611 0 18 9 2 0 0 0 0.25681 1 30828 30828 19.257 2.1441 1 1409000 + 6549 24551 4433 4535 7636 7636 0.008710630869018132 DQESCYKE 8 Unmodified _DQESCYKE_ 0 0 0 ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENST00000537175.1_1_12:16552211-16552709:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.775146484375 2 501.197664 1000.38078 0.53819 0.00026974 1.6133 0.00080857 2.1515 0.0010783 501.19838800341387 42.224 0.23941 42.224 42.161 42.401 0 15 11 2 0 0 0 8.7369 1 22902 22902 18.135 3.5533 1 2580200 6550 14989 4434 4536 7637 7637 -0.11939929109826153 DQESLTHDEA 10 Unmodified _DQESLTHDEA_ 0 0 0 REV__ENSG00000085274|ENST00000349841|MYNN REV__ENSG00000085274|ENST00000349841|MYNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2581176757812 2 572.741282 1143.46801 0.3691 0.0002114 -1.611 -0.0009227 -1.2419 -0.0007113 572.7403681531001 79.431 0.24073 79.431 79.326 79.566 0 11 9 2 0 0 0 0.71413 1 44120 44120 1.3295 0 1 246850 + 6551 17746 4435 4537 7638 7638 -0.09798431634544613 DQESLTHDEA 10 Unmodified _DQESLTHDEA_ 0 0 0 REV__ENSG00000085274|ENST00000349841|MYNN REV__ENSG00000085274|ENST00000349841|MYNN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2581176757812 2 572.741282 1143.46801 0.3691 0.0002114 -1.611 -0.0009227 -1.2419 -0.0007113 572.7403681531001 79.431 0.24073 79.431 79.326 79.566 0 11 9 2 0 0 0 0.23994 1 44120 44120 1.3295 0 1 246850 + 6552 17746 4435 4537 7639 7639 -0.09798431634544613 DQETKRWL 8 Unmodified _DQETKRWL_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7755737304688 2 538.28018 1074.54581 -0.44301 -0.00023847 -2.8533 -0.0015359 -3.2963 -0.0017744 538.278446836656 29.973 0.12655 29.973 29.888 30.015 0 9 5 2 0 0 0 8.7369 1 15536 15536 7.9102 0.62092 1 1328900 6553 6281 4436 4538 7640 7640 0.011516708121462216 DQFGIKDVF 9 Unmodified _DQFGIKDVF_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7716674804688 2 534.771657 1067.52876 0.79804 0.00042677 -1.2986 -0.00069445 -0.50055 -0.00026768 534.7707916770048 51.123 0.60269 51.123 50.897 51.5 0 57 28 4 0 0 0 0.53666 1 28172 28172 5.2307 0.47466 1 28370000 6554 1083 4437 4539 7641 7641 -0.0023024979368528875 DQFSYYLR 8 Unmodified _DQFSYYLR_ 0 0 0 REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2830200195312 2 546.261456 1090.50836 -0.42157 -0.00023029 0.092317 5.0429E-05 -0.32925 -0.00017986 546.2615673551736 55.94 0.58605 55.872 55.569 56.155 -0.068741 73 30 3 0 0 0 8.7369 1 30548 30548 12.532 12.532 1 33769000 + 6555 28624 4438 4540 7642 7642 -0.03327420453479135 DQGGPALVRVS 11 Unmodified _DQGGPALVRVS_ 0 0 0 REV__ENST00000395675.4_1_17:18575624-18576137:-|nuORF REV__ENST00000395675.4_1_17:18575624-18576137:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1098.707641601562 1 1098.5902 1097.58292 0.56687 0.00062276 -3.2236 -0.0035415 -2.6568 -0.0029187 1098.5875508997206 74.058 0.22772 73.582 73.487 73.714 -0.47588 19 9 3 0 0 0 0.30177 1 40484 40484 6.1918 0.89496 1 1622900 + 6556 24443 4439 4541 7643 7643 0.03803342357878137 DQGGPALVRVS 11 Unmodified _DQGGPALVRVS_ 0 0 0 REV__ENST00000395675.4_1_17:18575624-18576137:-|nuORF REV__ENST00000395675.4_1_17:18575624-18576137:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1098.5902 1097.58292 0.6332 0.00069563 -5.6135 -0.0061669 -4.9802 -0.0054712 1098.5835837116388 73.59 0.30451 73.634 73.451 73.755 0.043983 0.025758 -0.00091494 NaN 6.1918 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3925300 + 6557 24443 4439 4541 0.03803342357878137 DQGSLSGLVY 10 Unmodified _DQGSLSGLVY_ 0 0 0 ENST00000358758.11_1_16:29825955-29826759:+|nuORF ENST00000358758.11_1_16:29825955-29826759:+|nuORF ENST00000358758.11_1_16:29825955-29826759:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7581176757812 2 519.758746 1037.50294 -0.31585 -0.00016417 -0.31483 -0.00016364 -0.63068 -0.0003278 519.758220926053 55.317 0.24574 55.317 55.241 55.487 0 23 10 3 0 0 0 0.57893 1 30745 30745 12.241 2.1667 1 3083200 6558 12134 4440 4542 7644 7644 -0.014311440359733751 DQGWLAPG 8 Unmodified _DQGWLAPG_ 0 0 0 nc|ENSG00000100593|Q6H9L7-5|ISM2;nc|ENSG00000100593|Q6H9L7-3|ISM2;ENSG00000100593|ENST00000342219|ISM2 nc|ENSG00000100593|Q6H9L7-5|ISM2 nc|ENSG00000100593|Q6H9L7-5|ISM2 MSMS AL20221201_MKP_PDAC_01 4 422.2615966796875 2 422.20341 842.392267 NaN NaN NaN NaN NaN NaN NaN 14.966 1 12.438 11.938 12.938 -2.5273 0 0 0 0.97444 1 7640 7640 2.8892 0 1 6559 1847 4441 4543 7645 7645 -0.03523319233534039 DQHEERNF 8 Unmodified _DQHEERNF_ 0 0 0 REV__ENST00000459993.5_1_3:56658637-56658914:-|nuORF REV__ENST00000459993.5_1_3:56658637-56658914:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7357177734375 2 537.733594 1073.45264 1.3037 0.00070105 1.6365 0.00088 2.9402 0.0015811 537.7349585690915 33.875 0.59481 29.89 29.589 30.184 -3.9853 94 32 4 0 0 0 0.64853 2 19455 19455;19587 21.747 5.9784 1 74243000 + 6560 27288 4442 4544 7646;7647 7646 -0.08115253641085474 DQHLGPHLAL 10 Unmodified _DQHLGPHLAL_ 0 0 0 REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7968139648438 2 550.795998 1099.57744 0.82158 0.00045252 0.27636 0.00015222 1.0979 0.00060474 550.7959605727311 39.457 0.44426 35.006 34.75 35.194 -4.4509 51 26 2 0 0 0 0.060508 2 23309 23309;23432 55.503 5.5697 1 55659000 + 6561 25307 4443 4545 7648;7649 7648 0.031636635660561296 DQIRHWFI 8 Unmodified _DQIRHWFI_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7943725585938 2 557.793258 1113.57196 0.68515 0.00038217 0.5807 0.00032391 1.2658 0.00070608 557.7930852043797 82.589 0.59061 76.413 76.086 76.677 -6.1757 83 33 3 0 0 0 0.67686 2 54394 54261;54394 19.257 5.7491 1 96112000 6562 4389 4444 4546 7650;7651 7651 0.019719847742635466 DQLLQSNNLHS 11 Unmodified _DQLLQSNNLHS_ 0 0 0 REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8143920898438 2 634.815116 1267.61568 0.099555 6.3199E-05 0.28143 0.00017865 0.38098 0.00024185 634.8152632457986 92.03 0.40008 92.03 91.792 92.192 0 56 25 3 0 0 0 0.66428 2 50901 50807;50901 7.609 2.7119 1 1096000 + 6563 25589 4445 4547 7652;7653 7653 -0.007424953098961851 DQLLQSNNLHS 11 Unmodified _DQLLQSNNLHS_ 0 0 0 REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.3165893554688 2 634.815116 1267.61568 0.099555 6.3199E-05 0.28143 0.00017865 0.38098 0.00024185 634.8152632457986 92.03 0.40008 92.03 91.792 92.192 0 56 25 3 0 0 0 0.30582 1 50807 50807 1.0715 0 1 1096000 + 6564 25589 4445 4547 7654 7654 -0.007424953098961851 DQLQQMLDLVM 11 Unmodified _DQLQQMLDLVM_ 0 0 0 REV__ENSG00000162735|ENST00000368072|PEX19 REV__ENSG00000162735|ENST00000368072|PEX19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 666.7948608398438 2 667.328156 1332.64176 0.76261 0.00050891 -1.5823 -0.0010559 -0.81971 -0.00054701 667.3271004542889 70.146 0.19753 70.182 70.114 70.312 0.035507 14 9 2 0 0 0 0.29134 1 38630 38630 8.1555 0 1 1370000 + 6565 21683 4446 4548 7655 7655 -0.011256854543262307 DQMLRDMIE 9 Unmodified _DQMLRDMIE_ 0 0 0 ENST00000479007.5_1_7:1474234-1478659:-|nuORF;nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;ENST00000470807.5_1_7:1474234-1477130:-|nuORF ENST00000479007.5_1_7:1474234-1478659:-|nuORF ENST00000479007.5_1_7:1474234-1478659:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7661743164062 2 575.765191 1149.51583 1.4965 0.00086162 0.20042 0.00011539 1.6969 0.00097701 575.7655428513665 58.925 0.48199 52.85 52.618 53.1 -6.0745 73 26 4 0 0 0 0.14 1 37933 37933 29.082 8.2104 1 57857000 6566 7255 4447 4549 7656 7656 -0.05294772239722079 DQNCAPDENDF 11 Unmodified _DQNCAPDENDF_ 0 0 0 REV__ENSG00000169418|ENST00000368680|NPR1 REV__ENSG00000169418|ENST00000368680|NPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.22998046875 2 634.230224 1266.4459 NaN NaN NaN NaN NaN NaN NaN 48.567 1 48.567 48.067 49.067 0 0 0 0 0.93669 1 26654 26654 4.897 2.3985 1 + 6567 22399 4448 4550 7657 7657 -0.1766697937466688 DQNFSKGCEY 10 Unmodified _DQNFSKGCEY_ 0 0 0 REV__nc|ENSG00000196268|Q6ZR52|ZNF493 REV__nc|ENSG00000196268|Q6ZR52|ZNF493 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7432861328125 2 595.74277 1189.47099 -0.39406 -0.00023476 -0.59631 -0.00035525 -0.99037 -0.00059001 595.7423751110492 21.544 0.37307 21.544 21.381 21.754 0 71 51 2 0 0 0 0.6966 1 10846 10846 3.2813 0.97858 1 1243600 + 6568 23810 4449 4551 7658 7658 -0.11616879781399803 DQNHITVTGAF 11 Unmodified _DQNHITVTGAF_ 0 0 0 REV__ENSG00000198205|ENST00000358697|ZXDA REV__ENSG00000198205|ENST00000358697|ZXDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7933959960938 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.61059 2 51038 51038;51287 10.8 2.0541 1 114760000 + 6569 24001 4450 4552 7659;7660 7659 -0.019972653673448804 DQNRRYDQ 8 Unmodified _DQNRRYDQ_ 0 0 0 nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2;nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2;nc|ENSG00000176406|Q9UQ26-3|RIMS2;nc|ENSG00000176406|Q9UQ26-1|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2 nc|ENSG00000176406|Q9UQ26-4|RIMS2 nc|ENSG00000176406|Q9UQ26-4|RIMS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.751953125 2 547.752318 1093.49008 -0.15563 -8.5246E-05 1.2481 0.00068363 1.0924 0.00059838 547.7529989195709 21.734 0.30822 21.734 21.574 21.882 0 77 47 2 0 0 0 0.79669 1 10952 10952 8.5933 1.304 1 2284600 6570 8591 4451 4553 7661 7661 -0.05292162375485532 DQNRVLEY 8 Unmodified _DQNRVLEY_ 0 0 0 REV__TBC1D32|p.P812H|1|0.11|ENSG00000146350|chr6:121223282-121223282|G/T|missense_variant REV__TBC1D32|p.P812H|1|0.11|ENSG00000146350|chr6:121223282-121223282|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 518.7559204101562 2 518.756538 1035.49852 NaN NaN NaN NaN NaN NaN NaN 69.464 1 63.288 62.788 63.788 -6.1757 0 0 0 0.91837 1 45370 45370 17.113 3.605 1 + 6571 20827 4452 4554 7662 7662 -0.017806084588528392 DQNSCFAHF 9 Unmodified _DQNSCFAHF_ 0 0 0 nc|ENSG00000132837|Q9UI17-2|DMGDH;ENST00000518477.5_1_5:78317432-78365396:-|nuORF nc|ENSG00000132837|Q9UI17-2|DMGDH nc|ENSG00000132837|Q9UI17-2|DMGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7140502929688 2 534.713816 1067.41308 0.48631 0.00026004 0.67226 0.00035947 1.1586 0.0006195 534.7142162639047 64.633 0.32251 64.148 63.993 64.316 -0.48512 47 14 4 0 0 0 0.55144 1 35240 35240 4.3292 1.44 1 6232300 6572 14691 4453 4555 7663 7663 -0.11793096916176182 DQNSINEDTF 10 Unmodified _DQNSINEDTF_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.7485961914062 2 591.749107 1181.48366 -0.15344 -9.08E-05 -0.51007 -0.00030183 -0.66351 -0.00039263 591.7488338786682 30.149 0.23157 30.179 30.091 30.323 0.030106 16 9 2 0 0 0 0.69064 1 15777 15777 3.9444 0.66309 1 518070 + 6573 21792 4454 4556 7664 7664 -0.09982145117533037 DQNTQVNSSF 10 Unmodified _DQNTQVNSSF_ 0 0 0 nc|ENSG00000140873|Q8TE60-2|ADAMTS18;ENSG00000140873|ENST00000282849|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.248291015625 2 570.251817 1138.48908 -0.38363 -0.00021876 -3.113 -0.0017752 -3.4966 -0.0019939 570.2500104767786 48.582 0.24456 48.582 48.491 48.736 0 19 11 2 0 0 0 0.44373 1 26680 26680 19.257 0 1 2348800 6574 5278 4455 4557 7665 7665 -0.07462421535046815 DQPCMWSRQ 9 Unmodified _DQPCMWSRQ_ 0 0 0 REV__ENST00000263116.6_1_22:23503758-23504220:+|nuORF REV__ENST00000263116.6_1_22:23503758-23504220:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7406616210938 2 575.742051 1149.46955 0.46484 0.00026763 -1.5406 -0.00088698 -1.0758 -0.00061936 575.7413103742622 42.231 0.21445 42.231 42.125 42.339 0 12 10 2 0 0 0 0.52067 1 22872 22872 6.2058 0.97511 1 2368600 + 6575 25040 4456 4558 7666 7666 -0.09920792351158525 DQPEKWGL 8 Unmodified _DQPEKWGL_ 0 0 0 REV__ENSG00000178226|ENST00000268281|PRSS36 REV__ENSG00000178226|ENST00000268281|PRSS36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7409362792969 2 486.742899 971.471246 0.55117 0.00026828 -4.4478 -0.002165 -3.8967 -0.0018967 486.7399224287928 38.517 0.4226 38.517 38.389 38.811 0 33 21 2 0 0 0 0.50673 1 20590 20590 34.102 1.3168 1 2136900 + 6576 23030 4457 4559 7667 7667 -0.01563091999230437 DQPIELIII 9 Unmodified _DQPIELIII_ 0 0 0 REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3135986328125 2 527.313158 1052.61176 0.24489 0.00012913 0.41195 0.00021723 0.65685 0.00034636 527.313363371125 100.15 0.10893 99.995 99.926 100.03 -0.1575 6 3 2 0 0 0 0.5636 1 54689 54689 5.7319 2.8426 1 1011200 + 6577 26442 4458 4560 7668 7668 0.08756066934347473 DQPVQELNE 9 Unmodified _DQPVQELNE_ 0 0 0 REV__ENSG00000132952|ENST00000255304|USPL1 REV__ENSG00000132952|ENST00000255304|USPL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7880249023438 2 536.251286 1070.48802 0.83051 0.00044536 0.68496 0.00036731 1.5155 0.00081268 536.7531240042542 51.346 0.26775 51.346 51.208 51.475 0 20 11 2 0 0 0 0.21302 1 28390 28390 5.7319 5.7319 1 4705500 + 6578 19893 4459 4561 7669 7669 -0.04440635903961265 DQQDTVVF 8 Unmodified _DQQDTVVF_ 0 0 0 ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1 ENSG00000172352|ENST00000382407|CDY1B ENSG00000172352|ENST00000382407|CDY1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2255249023438 2 476.224539 950.434526 -0.24476 -0.00011656 1.4694 0.00069977 1.2247 0.00058321 476.2252873659252 41.568 0.23143 41.568 41.499 41.731 0 21 11 2 0 0 0 0.6895 1 22475 22475 18.135 4.2289 1 6737500 6579 4164 4460 4562 7670 7670 -0.042673886158013374 DQQDTVVF 8 Unmodified _DQQDTVVF_ 0 0 0 ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1 ENSG00000172352|ENST00000382407|CDY1B ENSG00000172352|ENST00000382407|CDY1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2252807617188 2 476.224539 950.434526 -0.086254 -4.1076E-05 0.95131 0.00045304 0.86506 0.00041196 476.225122073587 41.539 0.19688 41.235 41.09 41.287 -0.30304 14 8 2 0 0 0 0.57045 1 22004 22004 28.487 3.813 1 5083600 6580 4164 4460 4562 7671 7671 -0.042673886158013374 DQQDTVVF 8 Unmodified _DQQDTVVF_ 0 0 0 ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1 ENSG00000172352|ENST00000382407|CDY1B ENSG00000172352|ENST00000382407|CDY1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2249450683594 2 476.224539 950.434526 0.030683 1.4612E-05 0.72845 0.00034691 0.75913 0.00036152 476.2251019443118 41.207 0.24383 41.206 41.075 41.319 -0.0017929 24 11 3 0 0 0 0.6895 1 22009 22009 18.135 2.2878 1 3110400 6581 4164 4460 4562 7672 7672 -0.042673886158013374 DQQDTVVF 8 Unmodified _DQQDTVVF_ 0 0 0 ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1 ENSG00000172352|ENST00000382407|CDY1B ENSG00000172352|ENST00000382407|CDY1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2248840332031 2 476.224539 950.434526 NaN NaN NaN NaN NaN NaN NaN 41.62 1 41.618 41.118 42.118 -0.0017929 0 0 0 0.90769 1 22252 22252 18.135 2.2878 1 6582 4164 4460 4562 7673 7673 -0.042673886158013374 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.5499267578125 3 447.54958 1339.62691 0.36118 0.00016165 0.22726 0.00010171 0.58843 0.00026335 447.54968007958985 63.785 0.2704 63.785 63.659 63.93 0 31 10 4 0 0 0 0.71036 1 35568 35568 1.3296 0 1 4755100 6583 10023 4461 4563 7674 7674 -0.029316732157894876 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.5498352050781 3 447.54958 1339.62691 0.44287 0.00019821 -0.3623 -0.00016215 0.080564 3.6056E-05 447.549500255006 69.335 0.53215 69.335 69.046 69.578 0 89 23 5 0 0 0 0.71036 2 38557 38557;38662 1.3296 0.21989 1 23755000 6584 10023 4461 4563 7675;7676 7675 -0.029316732157894876 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.8836669921875 3 447.54958 1339.62691 0.35943 0.00016086 -0.21522 -9.6321E-05 0.14421 6.454E-05 447.549526020344 77.318 0.3372 77.318 77.105 77.442 0 45 15 4 0 0 0 0.71036 1 42991 42991 1.3296 0.4847 1 4142000 6585 10023 4461 4563 7677 7677 -0.029316732157894876 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.5494384765625 3 447.54958 1339.62691 -0.17998 -8.055E-05 0.97145 0.00043477 0.79147 0.00035422 447.5500258188492 69.631 0.54757 69.152 68.925 69.472 -0.47903 86 23 5 0 0 0 0.71036 2 38028 38028;38126 1.3296 0.11481 1 9893900 6586 10023 4461 4563 7678;7679 7678 -0.029316732157894876 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 447.54958 1339.62691 0.44287 0.00019821 -0.3623 -0.00016215 0.080564 3.6056E-05 447.549500255006 69.335 0.53215 69.335 69.046 69.578 0 0.091624 -0.00092657 NaN 1.3296 89 23 5 NaN NaN NaN NaN 0 NaN NaN 0 23755000 6587 10023 4461 4563 -0.029316732157894876 DQQHNKSSIHF 11 Unmodified _DQQHNKSSIHF_ 0 0 0 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 ENSG00000197928|ENST00000598513|ZNF677 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 447.54958 1339.62691 -0.17998 -8.055E-05 0.97145 0.00043477 0.79147 0.00035422 447.5500258188492 69.631 0.54757 69.152 68.925 69.472 -0.47903 -0.091624 0.00086419 NaN 1.3296 86 23 5 NaN NaN NaN NaN 0 NaN NaN 0 9893900 6588 10023 4461 4563 -0.029316732157894876 DQRQYFLVYA 10 Unmodified _DQRQYFLVYA_ 0 0 0 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15;REV__nc|ENSG00000102226|P51784|USP11 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1303.096923828125 1 1302.64771 1301.64044 2.2424 0.0029211 -4.2114 -0.005486 -1.969 -0.0025649 1303.6446493872988 81.849 0.12691 81.909 81.803 81.93 0.059929 7 4 2 0 0 0 0.23952 1 45240 45240 2.9952 0 1 3117500 + 6589 20086;18229 4462 4564 7680 7680 0.0016818456347209576 DQRVMEHF 8 Unmodified _DQRVMEHF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MSMS AL20221201_MKP_PDAC_01 4 531.3101196289062 2 531.245283 1060.47601 NaN NaN NaN NaN NaN NaN NaN 46.995 1 41.915 41.415 42.415 -5.0805 0 0 0 0.92452 1 29119 29119 15.847 1.2655 1 6590 673 4463 4565 7681 7681 -0.05180531128121402 DQSYDFCQF 9 Unmodified _DQSYDFCQF_ 0 0 0 REV__ENSG00000196132|ENST00000328439|MYT1 REV__ENSG00000196132|ENST00000328439|MYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7178344726562 2 576.718764 1151.42298 -0.18123 -0.00010452 0.2062 0.00011892 0.024965 1.4398E-05 576.7184269006418 55.269 0.31065 55.269 55.126 55.437 0 29 13 3 0 0 0 0.23158 1 30693 30693 20.454 3.3407 1 5735900 + 6591 23793 4464 4566 7682 7682 -0.1466795370147338 DQTIGLALTFQ 11 Unmodified _DQTIGLALTFQ_ 0 0 0 REV__ENST00000438378.2_1_2:132275414-132277996:+|nuORF REV__ENST00000438378.2_1_2:132275414-132277996:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8222045898438 2 603.821878 1205.6292 0.093047 5.6184E-05 -0.34461 -0.00020808 -0.25157 -0.0001519 603.8212498549866 93.591 0.83276 87.416 87.1 87.932 -6.1757 126 52 3 0 0 0 0.53099 1 61891 61891 23.79 10.747 1 43424000 + 6592 27050 4465 4567 7683 7683 0.0346136246930655 DQTLTWSLT 9 Unmodified _DQTLTWSLT_ 0 0 0 REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2914428710938 2 532.766571 1063.51859 0.16496 8.7885E-05 -3.0832 -0.0016426 -2.9183 -0.0015548 532.7624034268575 46.011 0.076775 45.687 45.64 45.717 -0.32425 5 3 2 0 0 0 0.19205 1 24624 24624 14.838 1.3304 1 2783600 + 6593 24722 4466 4568 7684 7684 -0.010628575189002731 DQTWITTRQYT 11 Unmodified _DQTWITTRQYT_ 0 0 0 REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF REV__ENST00000572017.1_1_16:10958826-10982354:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 706.8474731445312 2 706.843873 1411.67319 NaN NaN NaN NaN NaN NaN NaN 79.292 1 73.116 72.616 73.616 -6.1757 0 0 0 0.52067 1 51948 51948 23.79 6.6769 1 + 6594 28983 4467 4569 7685 7685 -0.016176531043583964 DQVREISF 8 Unmodified _DQVREISF_ 0 0 0 REV__ENST00000457976.1_1_9:93881489-93881789:-|nuORF REV__ENST00000457976.1_1_9:93881489-93881789:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2532348632812 2 497.253631 992.49271 0.34663 0.00017236 0.18246 9.073E-05 0.52909 0.00026309 497.2535252786449 42.222 0.25656 42.222 42.105 42.362 0 14 12 2 0 0 0 0.54555 1 22893 22893 30.637 1.555 1 3406800 + 6595 27271 4468 4570 7686 7686 -0.0038370697051277602 DQVSGQCWCS 10 Unmodified _DQVSGQCWCS_ 0 0 0 REV__ENSG00000237452|ENST00000457052|MEIOSIN REV__ENSG00000237452|ENST00000457052|MEIOSIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.709716796875 2 556.710416 1111.40628 NaN NaN NaN NaN NaN NaN NaN 70.541 1 70.064 69.564 70.564 -0.47735 0 0 0 0.95103 1 38589 38589 5.7319 0.97584 1 + 6596 24433 4469 4571 7687 7687 -0.14496777859062604 DQYHWGGAY 9 Unmodified _DQYHWGGAY_ 0 0 0 REV__ENSG00000103184|ENST00000251170|SEC14L5 REV__ENSG00000103184|ENST00000251170|SEC14L5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.4877014160156 3 366.154279 1095.44101 -0.83421 -0.00030545 -1.6051 -0.00058772 -2.4393 -0.00089316 366.1548231617168 77.961 0.51961 77.478 77.215 77.735 -0.4826 150 36 5 0 0 0 0.60285 1 42774 42774 1.1933 0.41681 1 18877000 + 6597 18289 4470 4572 7688 7688 -0.10289450664436117 DQYKEMYLF 9 Unmodified _DQYKEMYLF_ 0 0 0 nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2 nc|ENSG00000167968|Q92874-2|DNASE1L2 nc|ENSG00000167968|Q92874-2|DNASE1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8589172363281 3 412.858363 1235.55326 NaN NaN NaN NaN NaN NaN NaN 23.777 1 23.777 23.277 24.277 0 0 0 0 0.84369 1 12129 12129 1.1933 0.41681 1 6598 7688 4471 4573 7689 7689 -0.05509357702453599 DRCFSNYS 8 Unmodified _DRCFSNYS_ 0 0 0 ENSG00000157103|ENST00000287766|SLC6A1 ENSG00000157103|ENST00000287766|SLC6A1 ENSG00000157103|ENST00000287766|SLC6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2021484375 2 496.200541 990.38653 0.44781 0.0002222 -0.67624 -0.00033555 -0.22843 -0.00011335 496.2000932282409 59.589 0.30833 59.589 59.465 59.773 0 28 13 3 0 0 0 0.75262 1 33190 33190 12.532 0.89125 1 5624000 6599 6499 4472 4574 7690 7690 -0.10904785807497319 DRCPCRHFRL 10 Unmodified _DRCPCRHFRL_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8819580078125 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 14.974 1 14.974 14.474 15.474 0 0 0 0 1.0024 1 7170 7170 0.13989 0 1 + 6600 26318 4473 4575 7691 7691 -0.015383377949774513 DRCPCRHFRL 10 Unmodified _DRCPCRHFRL_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826904296875 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 38.137 1 37.865 37.365 38.365 -0.27133 0 0 0 1.0024 1 20069 20069 0.13989 0 1 + 6601 26318 4473 4575 7692 7692 -0.015383377949774513 DRCPCRHFRL 10 Unmodified _DRCPCRHFRL_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8818969726562 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 104.29 1 104.19 103.69 104.69 -0.096809 0 0 0 1.0024 1 56826 56826 0.13989 0 1 + 6602 26318 4473 4575 7693 7693 -0.015383377949774513 DRCPCRHFRL 10 Unmodified _DRCPCRHFRL_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8820495605469 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 31.409 1 31.439 30.939 31.939 0.030106 0 0 0 1.0024 1 16455 16455 0.13989 0 1 + 6603 26318 4473 4575 7694 7694 -0.015383377949774513 DRCPCRHFRL 10 Unmodified _DRCPCRHFRL_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8824768066406 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 37.733 1 37.751 37.251 38.251 0.01704 0 0 0 1.0024 1 20045 20045 0.13989 0 1 + 6604 26318 4473 4575 7695 7695 -0.015383377949774513 DRDGQHSWVPR 11 Unmodified _DRDGQHSWVPR_ 0 0 0 nc|ENSG00000185340|Q99501|GAS2L1;ENSG00000185340|ENST00000616432|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.826904296875 2 676.826349 1351.63815 0.46479 0.00031459 1.74 0.0011777 2.2048 0.0014923 676.8276325214915 68.545 0.83269 68.064 67.348 68.18 -0.48071 90 38 3 0 0 0 0.71341 1 37146 37146 2.9952 0.26005 1 4348700 6605 9364 4474 4576 7696 7696 -0.02360851121648011 DRDGQHSWVPR 11 Unmodified _DRDGQHSWVPR_ 0 0 0 nc|ENSG00000185340|Q99501|GAS2L1;ENSG00000185340|ENST00000616432|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.8287963867188 2 676.826349 1351.63815 0.23452 0.00015873 0.5266 0.00035642 0.76113 0.00051515 676.826467965677 68.84 0.44292 68.359 68.161 68.604 -0.48071 34 19 2 0 0 0 0.71341 1 37699 37699 2.9952 0 1 2373100 6606 9364 4474 4576 7697 7697 -0.02360851121648011 DRDLDHKDF 9 Unmodified _DRDLDHKDF_ 0 0 0 REV__nc|ENSG00000126858|Q8IXI2-4|RHOT1 REV__nc|ENSG00000126858|Q8IXI2-4|RHOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5174255371094 3 387.515877 1159.5258 NaN NaN NaN NaN NaN NaN NaN 28.599 1 28.537 28.037 29.037 -0.062159 0 0 0 0.83329 1 14767 14767 2.086 0.63089 1 + 6607 19563 4475 4577 7698 7698 -0.047581249184759145 DRDVYLVI 8 Unmodified _DRDVYLVI_ 0 0 0 ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1 ENST00000591098.1_1_18:43684359-43698283:+|nuORF ENST00000591098.1_1_18:43684359-43698283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5398559570312 1 992.541123 991.533846 -0.31366 -0.00031132 0.26709 0.0002651 -0.046562 -4.6215E-05 992.5409536308699 51.922 0.23835 51.922 51.777 52.016 0 23 10 3 0 0 0 0.44629 1 28669 28669 39.957 1.9833 1 5904100 6608 6172 4476 4578 7699 7699 0.037740540689469526 DRDVYLVI 8 Unmodified _DRDVYLVI_ 0 0 0 ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1 ENST00000591098.1_1_18:43684359-43698283:+|nuORF ENST00000591098.1_1_18:43684359-43698283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.778076171875 2 496.7742 991.533846 0.54078 0.00026865 1.4348 0.00071279 1.9756 0.00098144 496.77520690346114 52.429 0.30956 51.995 51.83 52.139 -0.43367 46 15 4 0 0 0 0.36356 1 28280 28280 48.346 6.2513 1 23128000 6609 6172 4476 4578 7700 7700 0.037740540689469526 DRDVYLVI 8 Unmodified _DRDVYLVI_ 0 0 0 ENST00000591098.1_1_18:43684359-43698283:+|nuORF;ENSG00000152240|ENST00000282058|HAUS1 ENST00000591098.1_1_18:43684359-43698283:+|nuORF ENST00000591098.1_1_18:43684359-43698283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5436401367188 1 992.541123 991.533846 0.42769 0.0004245 0.18681 0.00018542 0.6145 0.00060992 992.54107435149 52.438 0.2679 52.005 51.871 52.139 -0.43367 25 13 3 0 0 0 0.19688 1 28297 28297 71.134 6.8973 1 4206000 6610 6172 4476 4578 7701 7701 0.037740540689469526 DREGTWQSEE 10 Unmodified _DREGTWQSEE_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.7594604492188 2 618.760006 1235.50546 1.0676 0.0006606 -0.047609 -2.9458E-05 1.02 0.00063114 618.7600772133018 58.416 0.40234 52.342 52.145 52.547 -6.0745 31 21 2 0 0 0 0.65282 1 37399 37399 8.1555 3.2585 1 12469000 + 6611 21592 4477 4579 7702 7702 -0.10287340368950026 DRFCKPDSDRF 11 Unmodified _DRFCKPDSDRF_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MSMS AL20221201_MKP_PDAC_01 4 462.54638671875 3 462.547071 1384.61938 NaN NaN NaN NaN NaN NaN NaN 96.208 1 90.033 89.533 90.533 -6.1757 0 0 0 0.88164 1 63746 63746 4.1166 2.6615 1 6612 3755 4478 4580 7703 7703 -0.05754148807704951 DRFFMWIFF 9 Unmodified _DRFFMWIFF_ 0 0 0 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789978027344 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 88.934 1 88.934 88.434 89.434 0 0 0 0 0.86004 1 49217 49217 0.26902 0.062163 1 6613 8412 4479 4581 7704 7704 -0.025367471237814243 DRFPQELAPSP 11 Unmodified _DRFPQELAPSP_ 0 0 0 REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5477905273438 3 419.547177 1255.6197 0.007088 2.9737E-06 0.94327 0.00039575 0.95036 0.00039872 419.5475322030856 17.971 0.14414 17.977 17.886 18.03 0.0060482 24 10 3 0 0 0 0.73631 1 9064 9064 0.84494 0.21812 1 1880900 + 6614 24647 4480 4582 7705 7705 0.002115941838155777 DRFWDQWYLWY 11 Unmodified _DRFWDQWYLWY_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENST00000488825.5_1_3:123813684-123881061:+|nuORF nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MSMS AL20221201_MKP_PDAC_01 4 559.9188232421875 3 559.921014 1676.74121 NaN NaN NaN NaN NaN NaN NaN 45.777 1 40.822 40.322 41.322 -4.9549 0 0 0 0.94293 1 28166 28166 0.40827 0.31342 1 6615 16313 4481 4583 7706 7706 -0.0700878345367073 DRFWVVSF 8 Unmodified _DRFWVVSF_ 0 0 0 REV__ENST00000265801.6_2_8:20105580-20105898:-|nuORF REV__ENST00000265801.6_2_8:20105580-20105898:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1804809570312 3 352.515148 1054.52362 NaN NaN NaN NaN NaN NaN NaN 17.757 1 17.757 17.257 18.257 0 0 0 0 0.97444 1 8776 8776 0.40072 0.1317 1 + 6616 25096 4482 4584 7707 7707 -0.001465088656232183 DRGDEEDSF 9 Unmodified _DRGDEEDSF_ 0 0 0 REV__PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant REV__PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2077026367188 2 535.207075 1068.3996 0.54058 0.00028932 0.13876 7.4263E-05 0.67933 0.00036358 535.2072581592714 79.153 0.52731 78.667 78.506 79.033 -0.48596 32 22 2 0 0 0 0.58466 1 43353 43353 2.3027 0 1 620310 + 6617 24173 4483 4585 7708 7708 -0.13186676214422732 DRGKYPQIHF 10 Unmodified _DRGKYPQIHF_ 0 0 0 REV__nc|ENSG00000185090|Q5VSG8-3|MANEAL REV__nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.8880310058594 3 420.887645 1259.64111 -0.10282 -4.3275E-05 -0.29956 -0.00012608 -0.40238 -0.00016936 420.88756160278575 22.614 0.3061 22.637 22.513 22.819 0.022896 30 12 3 0 0 0 0.71123 1 11597 11597 0.69767 0.07084 1 3630900 + 6618 23470 4484 4586 7709 7709 0.02167024003165352 DRGPSRFHF 9 Unmodified _DRGPSRFHF_ 0 0 0 REV__ENSG00000185313|ENST00000449082|SCN10A REV__ENSG00000185313|ENST00000449082|SCN10A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7780151367188 2 559.778139 1117.54173 NaN NaN NaN NaN NaN NaN NaN 46.687 1 46.654 46.154 47.154 -0.033417 0 0 0 0.6557 1 25127 25127 10.824 0.75 1 + 6619 23493 4485 4587 7710 7710 -0.012343738909294188 DRGTSLTAE 9 Unmodified _DRGTSLTAE_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MSMS AL20221201_MKP_PDAC_01 4 475.2342529296875 2 475.232896 948.451239 NaN NaN NaN NaN NaN NaN NaN 92.232 1 86.056 85.556 86.556 -6.1757 0 0 0 0.56093 1 60987 60987 13.906 0 1 6620 5094 4486 4588 7711 7711 -0.025048877298672778 DRIRWRRWRLE 11 Unmodified _DRIRWRRWRLE_ 0 0 0 ENST00000256858.10_2_18:59854532-59854781:+|nuORF ENST00000256858.10_2_18:59854532-59854781:+|nuORF ENST00000256858.10_2_18:59854532-59854781:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2356872558594 4 411.235379 1640.91241 -0.061136 -2.5141E-05 -0.70508 -0.00028995 -0.76621 -0.00031509 411.23516224150984 21.307 0.20041 21.32 21.202 21.402 0.013796 74 35 3 0 0 0 0.74429 1 10874 10874 0.094841 0.094841 1 5447500 6621 11186 4487 4589 7712 7712 0.11759011428148369 DRKELLPRHN 10 Unmodified _DRKELLPRHN_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MSMS AL20221201_MKP_PDAC_01 4 426.5752258300781 3 426.573949 1276.70002 NaN NaN NaN NaN NaN NaN NaN 19.182 1 16.526 16.026 17.026 -2.6564 0 0 0 0.98857 1 10140 10140 1.9064 0.57673 1 + 6622 20268 4488 4590 7713 7713 0.07273500297515056 DRKGGNAHMI 10 Unmodified _DRKGGNAHMI_ 0 0 0 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 nc|ENSG00000095637|Q9BX66-12|SORBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7776489257812 2 549.777282 1097.54001 0.10765 5.9183E-05 0.89993 0.00049476 1.0076 0.00055395 550.2793152147059 38.367 0.75536 38.384 38.09 38.846 0.01704 82 35 4 0 0 0 0.14923 1 20380 20380 39.95 1.7741 1 19098000 6623 16076 4489 4591 7714 7714 -0.0048575097118828126 DRLNFTVEL 9 Unmodified _DRLNFTVEL_ 0 0 0 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7951049804688 2 553.795663 1105.57677 0.48446 0.00026829 -1.2462 -0.00069016 -0.76178 -0.00042187 553.7949062852161 63.405 0.32382 63.405 63.219 63.543 0 30 17 2 0 0 0 0.21643 2 35317 35317;35419 21.537 6.6987 1 4371500 + 6624 22753 4490 4592 7715;7716 7715 0.028208241263882883 DRLWSHYR 8 Unmodified _DRLWSHYR_ 0 0 0 REV__nc|ENSG00000167011|Q8N8M0-2|NAT16 REV__nc|ENSG00000167011|Q8N8M0-2|NAT16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1916198730469 3 378.193068 1131.55738 NaN NaN NaN NaN NaN NaN NaN 18.265 1 18.279 17.779 18.779 0.013865 0 0 0 0.95254 1 9145 9145 10.074 0.6908 1 + 6625 22174 4491 4593 7717 7717 -0.0031408737386300345 DRLYQLFAYAQ 11 Unmodified _DRLYQLFAYAQ_ 0 0 0 REV__ENSG00000163527|ENST00000295770|STT3B REV__ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2382507324219 3 463.238343 1386.6932 0.88791 0.00041131 -0.7049 -0.00032654 0.18301 8.4777E-05 463.237973941292 57.977 0.21463 57.911 57.775 57.99 -0.066036 25 10 3 0 0 0 0.65096 1 31549 31549 8.7518 4.6352 1 6495000 + 6626 21778 4492 4594 7718 7718 0.015321426262971727 DRNHLCLQRQP 11 Unmodified _DRNHLCLQRQP_ 0 0 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MSMS AL20221201_MKP_PDAC_01 4 460.5715637207031 3 460.57021 1378.6888 NaN NaN NaN NaN NaN NaN NaN 14.391 1 11.888 11.388 12.388 -2.5029 0 0 0 0.93969 1 7307 7307 1.1098 0 1 6627 8666 4493 4595 7719 7719 0.014603549316916542 DRNQEWSDFW 10 Unmodified _DRNQEWSDFW_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.5285034179688 3 461.530186 1381.56873 0.19417 8.9617E-05 -2.4317 -0.0011223 -2.2375 -0.0010327 461.52877049093587 17.729 0.12473 17.734 17.665 17.79 0.0050564 13 8 3 0 0 0 0.72044 1 8970 8970 0.62683 0 1 706060 + 6628 22523 4494 4596 7720 7720 -0.1067935486105398 DRNTFSTTF 9 Unmodified _DRNTFSTTF_ 0 0 0 REV__ENST00000083182.7_1_17:58577775-58603168:-|nuORF REV__ENST00000083182.7_1_17:58577775-58603168:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.1733093261719 3 363.505089 1087.49344 NaN NaN NaN NaN NaN NaN NaN 46.755 1 41.674 41.174 42.174 -5.0805 0 0 0 0.50124 1 28943 28943 10.8 0 1 + 6629 24707 4495 4597 7721 7721 -0.046809123215098225 DRPAKDQLPCL 11 Unmodified _DRPAKDQLPCL_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MSMS AL20221201_MKP_PDAC_01 4 628.3275756835938 2 628.326805 1254.63906 NaN NaN NaN NaN NaN NaN NaN 17.983 1 15.396 14.896 15.896 -2.5866 0 0 0 0.90364 1 9447 9447 7.1017 1.3699 1 + 6630 24605 4496 4598 7722 7722 0.02192227203067887 DRPFSVPLF 9 Unmodified _DRPFSVPLF_ 0 0 0 ENST00000361361.6_1_1:155224944-155224989:-|nuORF ENST00000361361.6_1_1:155224944-155224989:-|nuORF ENST00000361361.6_1_1:155224944-155224989:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.8614807128906 3 359.862437 1076.56548 NaN NaN NaN NaN NaN NaN NaN 14.857 1 12.33 11.83 12.83 -2.5273 0 0 0 0.50124 1 7576 7576 10.8 3.7624 1 6631 12183 4497 4599 7723 7723 0.030260468229016624 DRPHQKSVGF 10 Unmodified _DRPHQKSVGF_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5189514160156 3 390.871995 1169.59415 -0.35711 -0.00013958 1.5762 0.00061608 1.2191 0.00047649 390.8724510599228 29.301 0.24989 29.301 29.182 29.432 0 20 11 2 0 0 0 0.23946 1 15163 15163 3.5871 0.59182 1 1070000 6632 9567 4498 4600 7724 7724 0.016141644520530463 DRQRRWQQREF 11 Unmodified _DRQRRWQQREF_ 0 0 0 REV__ENSG00000128408|ENST00000614167|RIBC2 REV__ENSG00000128408|ENST00000614167|RIBC2 MSMS AL20221201_MKP_PDAC_01 4 802.9144287109375 2 802.911279 1603.808 NaN NaN NaN NaN NaN NaN NaN 100.59 1 94.409 93.909 94.909 -6.1757 0 0 0 0.93669 1 67294 67294 4.897 1.3005 1 + 6633 19610 4499 4601 7725 7725 0.030252648807845617 DRRDVRFSF 9 Unmodified _DRRDVRFSF_ 0 0 0 REV__ENSG00000135862|ENST00000258341|LAMC1 REV__ENSG00000135862|ENST00000258341|LAMC1 MSMS AL20221201_MKP_PDAC_01 4 400.1880493164062 3 399.875628 1196.60505 NaN NaN NaN NaN NaN NaN NaN 17.159 1 14.573 14.073 15.073 -2.5866 0 0 0 0.82396 1 8948 8948 2.7352 0.23671 1 + 6634 20103 4500 4602 7726 7726 0.014615668263104453 DRREMGYV 8 Unmodified _DRREMGYV_ 0 0 0 REV__nc|ENSG00000125520|Q9NR83-4|SLC2A4RG REV__nc|ENSG00000125520|Q9NR83-4|SLC2A4RG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2452392578125 2 513.245283 1024.47601 NaN NaN NaN NaN NaN NaN NaN 19.411 1 19.434 18.934 19.934 0.023106 0 0 0 0.97444 1 9785 9785 0.79363 0 1 + 6635 19499 4501 4603 7727 7727 -0.03524531128118724 DRRLDPIIT 9 Unmodified _DRRLDPIIT_ 0 0 0 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.8168334960938 2 549.81693 1097.61931 -0.20427 -0.00011231 -0.60825 -0.00033442 -0.81251 -0.00044673 549.8165043209773 19.317 0.16913 19.317 19.248 19.417 0 15 10 2 0 0 0 0.56345 1 9657 9657 3.5965 0.31518 1 625290 6636 6260 4502 4604 7728 7728 0.07440219254613112 DRRLDPIIT 9 Unmodified _DRRLDPIIT_ 0 0 0 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.81693 1097.61931 -0.20427 -0.00011231 -0.60825 -0.00033442 -0.81251 -0.00044673 549.8165043209773 19.317 0.16913 19.317 19.248 19.417 0 0 0 NaN 3.5965 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 625290 6637 6260 4502 4604 0.07440219254613112 DRRLRLRRRM 10 Unmodified _DRRLRLRRRM_ 0 0 0 REV__ENSG00000237172|ENST00000449549|B3GNT9 REV__ENSG00000237172|ENST00000449549|B3GNT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.6243896484375 3 476.624872 1426.85279 NaN NaN NaN NaN NaN NaN NaN 102.28 1 102.23 101.73 102.73 -0.045853 0 0 0 1.005 1 56812 56812 0.12286 0.049601 1 + 6638 24429 4503 4605 7729 7729 0.15643417213118482 DRRRWNFRQKL 11 Unmodified _DRRRWNFRQKL_ 0 0 0 ENST00000448841.5_1_10:104575113-104575296:+|nuORF ENST00000448841.5_1_10:104575113-104575296:+|nuORF ENST00000448841.5_1_10:104575113-104575296:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.4757995605469 4 394.474829 1573.87021 0.93387 0.00036839 -0.23985 -9.4615E-05 0.69402 0.00027377 394.4748591477469 18.434 0.35763 15.812 15.672 16.03 -2.6215 71 34 3 0 0 0 0.73237 1 9798 9798 1.2148 0.80657 1 2555400 6639 13496 4504 4606 7730 7730 0.1062303601977419 DRRSPLPERR 10 Unmodified _DRRSPLPERR_ 0 0 0 REV__nc|ENSG00000147274|P38159-2|RBMX REV__nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.9120178222656 3 427.909331 1280.70617 0.50096 0.00021437 4.4605 0.0019087 4.9615 0.0021231 428.245217166591 40.485 0.23377 40.49 40.337 40.571 0.0050545 14 10 2 0 0 0 0.70244 1 21628 21628 2.6312 0.19645 1 1027400 + 6640 20882 4505 4607 7731 7731 0.07704018529011591 DRRVLFMQF 9 Unmodified _DRRVLFMQF_ 0 0 0 REV__ENST00000555891.1_1_14:93043680-93052850:+|nuORF REV__ENST00000555891.1_1_14:93043680-93052850:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5491333007812 3 404.549976 1210.6281 NaN NaN NaN NaN NaN NaN NaN 33.519 1 33.519 33.019 34.019 0 0 0 0 0.6557 1 17587 17587 7.1017 1.2336 1 + 6641 28777 4506 4608 7732 7732 0.03120869619442601 DRSLPLQWEF 10 Unmodified _DRSLPLQWEF_ 0 0 0 REV__DLGAP1|p.R109W|1|0.19|ENSG00000170579|chr18:3879744-3879744|G/A|missense_variant REV__DLGAP1|p.R109W|1|0.19|ENSG00000170579|chr18:3879744-3879744|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 52.654 1 52.654 52.154 53.154 0 0 0 0 0.96981 1 29148 29148 1.9064 0.71303 1 + 6642 16908 4507 4609 7733 7733 0.007201845634881465 DRSMPHQEILA 11 Unmodified _DRSMPHQEILA_ 0 0 0 ENSG00000163848|ENST00000360647|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8859252929688 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 66.385 1 66.394 65.894 66.894 0.0095596 0 0 0 0.94209 1 36420 36420 1.0136 0.088041 1 6643 7083 4508 4610 7734 7734 -0.006769608022977991 DRSQWLDVKF 10 Unmodified _DRSQWLDVKF_ 0 0 0 ENST00000488824.1_1_1:110279695-110282569:-|nuORF;ENSG00000134202|ENST00000361066|GSTM3 ENST00000488824.1_1_1:110279695-110282569:-|nuORF ENST00000488824.1_1_1:110279695-110282569:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.8919677734375 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 81.563 1 81.563 81.063 82.063 0 0 0 0 1.0024 1 45265 45265 0.13989 0.04505 1 6644 4567 4509 4611 7735 7735 0.016715869377549097 DRSRMSIF 8 Unmodified _DRSRMSIF_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2567138671875 2 506.255651 1010.49675 2.1564 0.0010917 0.25398 0.00012858 2.4104 0.0012203 506.2562169119187 94.573 0.60535 94.588 94.293 94.899 0.014244 43 22 3 0 0 0 0.80624 1 52530 52530 2.8892 0 1 3967600 6645 4457;16195 4510 4612 7736 7736 -0.008079407484501644 DRVRWQWRHWS 11 Unmodified _DRVRWQWRHWS_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.40576171875 2 806.405632 1610.79671 NaN NaN NaN NaN NaN NaN NaN 91.148 1 91.148 90.648 91.648 0 0 0 0 0.9435 1 50411 50411 0 0 1 + 6646 19145 4511 4613 7737 7737 0.015744875772952582 DRWQHFTQTAQ 11 Unmodified _DRWQHFTQTAQ_ 0 0 0 REV__nc|ENSG00000154380|Q8N8S7-3|ENAH REV__nc|ENSG00000154380|Q8N8S7-3|ENAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 709.3340454101562 2 709.334007 1416.65346 -0.028814 -2.0439E-05 0.20564 0.00014587 0.17682 0.00012543 709.3340768543443 39.837 0.27067 39.837 39.681 39.952 0 43 13 4 0 0 0 0.61059 1 21340 21340 10.8 0 1 7557400 + 6647 21228 4512 4614 7738 7738 -0.03819984324422876 DRYDSLGLL 9 Unmodified _DRYDSLGLL_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000489375.5_1_19:40739781-40741265:-|nuORF;ENST00000496089.6_1_19:40739781-40742062:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2757568359375 2 526.274564 1050.53457 0.79556 0.00041868 -4.0654 -0.0021395 -3.2698 -0.0017208 526.2726804570319 73.825 0.2597 73.825 73.663 73.922 0 20 10 2 0 0 0 0.36964 1 41144 41144 13.906 0 1 957440 6648 2289 4513 4615 7739 7739 0.011328487179980584 DSALPMLI 8 Unmodified _DSALPMLI_ 0 0 0 REV__ENST00000219281.7_1_16:58054788-58055016:+|nuORF REV__ENST00000219281.7_1_16:58054788-58055016:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2325439453125 2 430.233322 858.45209 1.125 0.00048402 -1.4389 -0.00061904 -0.31383 -0.00013502 430.23240818846716 99.422 0.2057 93.246 93.174 93.38 -6.1757 22 13 2 0 0 0 0.5953 1 66236 66236 26.341 6.9023 1 21912000 + 6649 24753 4514 4616 7740 7740 0.017202353854941066 DSCDWHHLASS 11 Unmodified _DSCDWHHLASS_ 0 0 0 REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.8370666503906 3 419.836621 1256.48803 0.13444 5.6441E-05 1.2078 0.00050709 1.3423 0.00056353 419.83701246457633 41.037 0.22429 41.035 40.912 41.136 -0.0017929 25 10 4 0 0 0 0.73115 1 21906 21906 0.45452 0.046251 1 4179200 + 6650 29265 4515 4617 7741 7741 -0.12994959175580334 DSCDWHHLASS 11 Unmodified _DSCDWHHLASS_ 0 0 0 REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF REV__ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 419.836621 1256.48803 0.13444 5.6441E-05 1.2078 0.00050709 1.3423 0.00056353 419.83701246457633 41.037 0.22429 41.035 40.912 41.136 -0.0017929 0 0 NaN 0.45452 25 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4179200 + 6651 29265 4515 4617 -0.12994959175580334 DSCINLLMQVF 11 Unmodified _DSCINLLMQVF_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8114624023438 2 641.812141 1281.60973 0.34971 0.00022445 -1.3303 -0.00085382 -0.98061 -0.00062937 642.3133044864823 74.762 0.43976 74.808 74.481 74.92 0.045967 35 15 3 0 0 0 0.67922 1 41141 41141 6.2058 0.47393 1 2853300 + 6652 19635 4516 4618 7742 7742 -0.019810531374560014 DSDCVDTS 8 Unmodified _DSDCVDTS_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6;REV__PPP6R3-LRP5|1|fusion REV__PPP6R3-LRP5|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.8099365234375 2 421.14764 840.280727 NaN NaN NaN NaN NaN NaN NaN 74.659 1 74.659 74.159 75.159 0 0 0 0 0.97444 1 41541 41541 0.69038 0.69038 1 + 6653 30078;17460 4517 4619 7743 7743 -0.14580166443636244 DSDRGKYHCAV 11 Unmodified _DSDRGKYHCAV_ 0 0 0 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 ENSG00000134256|ENST00000682167|CD101 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.7842407226562 2 625.782761 1249.55097 0.80623 0.00050452 1.9959 0.001249 2.8021 0.0017535 625.783712837374 34.24 0.2257 30.255 30.115 30.34 -3.9853 23 12 2 0 0 0 0.35681 1 19710 19710 23.79 2.0431 1 9436300 6654 4579 4518 4620 7744 7744 -0.06382393387548291 DSDYGGHG 8 Unmodified _DSDYGGHG_ 0 0 0 REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1 REV__nc|ENSG00000148690|Q70Z53-2|FRA10AC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1490478515625 2 404.148832 806.283111 NaN NaN NaN NaN NaN NaN NaN 10.97 1 10.891 10.391 11.391 -0.07938 0 0 0 0.97444 1 5341 5341 0 0 1 + 6655 20962 4519 4621 7745 7745 -0.1277794992363397 DSEEHGSDKLS 11 Unmodified _DSEEHGSDKLS_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2589111328125 2 602.259839 1202.50512 -0.25217 -0.00015187 -1.5079 -0.00090815 -1.7601 -0.00106 602.2589599108787 33.941 0.27524 33.75 33.589 33.865 -0.19132 22 10 3 0 0 0 0.66428 1 17698 17698 7.609 1.4032 1 1430400 + 6656 21991 4520 4622 7746 7746 -0.08802760088792638 DSETTFKCY 9 Unmodified _DSETTFKCY_ 0 0 0 REV__NTRK1|p.R702C|1|0.1|ENSG00000198400|chr1:156880056-156880056|C/T|missense_variant REV__NTRK1|p.R702C|1|0.1|ENSG00000198400|chr1:156880056-156880056|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1553344726562 3 365.155069 1092.44338 -0.81719 -0.0002984 0.53311 0.00019467 -0.28408 -0.00010373 365.15593881416135 77.981 0.39687 77.498 77.312 77.709 -0.4826 48 31 2 0 0 0 0.20727 1 42660 42660 2.4985 0 1 7058200 + 6657 30061 4521 4623 7747 7747 -0.09914783041631381 DSEVSWIPPV 10 Unmodified _DSEVSWIPPV_ 0 0 0 REV__ENST00000497453.1_1_1:154524878-154531400:-|nuORF REV__ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2572021484375 2 564.782222 1127.54989 0.26877 0.0001518 -0.012819 -7.24E-06 0.25596 0.00014456 564.7823259886201 62.836 0.25913 62.836 62.704 62.963 0 16 10 2 0 0 0 0.23325 1 35070 35070 10.074 1.4806 1 945650 + 6658 21560 4522 4624 7748 7748 -0.008782844848155946 DSFLSTDRKM 10 Unmodified _DSFLSTDRKM_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5294189453125 3 400.529017 1198.56522 0.62906 0.00025196 0.8294 0.0003322 1.4585 0.00058416 400.529292921253 49.552 0.33223 49.503 49.371 49.703 -0.048824 48 16 5 0 0 0 0.6966 1 26742 26742 1.5923 0.37745 1 15683000 + 6659 20275 4523 4625 7749 7749 -0.026117409592643526 DSFLSTDRKM 10 Unmodified _DSFLSTDRKM_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2329406738281 3 400.529017 1198.56522 0.62906 0.00025196 0.8294 0.0003322 1.4585 0.00058416 400.529292921253 49.552 0.33223 49.503 49.371 49.703 -0.048824 48 16 5 0 0 0 0.23966 1 26858 26858 3.3196 0.68841 1 15683000 + 6660 20275 4523 4625 7750 7750 -0.026117409592643526 DSFVLVTAY 9 Unmodified _DSFVLVTAY_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20221201_MKP_PDAC_01 4 507.7608337402344 2 507.760758 1013.50696 NaN NaN NaN NaN NaN NaN NaN 85.503 1 79.327 78.827 79.827 -6.1757 0 0 0 0.18753 1 56317 56317 32.305 3.8186 1 6661 1880 4524 4626 7751 7751 0.0007494545775443839 DSFWLWVFGPE 11 Unmodified _DSFWLWVFGPE_ 0 0 0 REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.8251342773438 2 691.824421 1381.63429 -0.25266 -0.0001748 2.4729 0.0017108 2.2202 0.001536 691.8260542988602 31.022 0.22022 31.022 30.932 31.152 0 16 10 2 0 0 0 0.56638 1 16159 16159 13.042 5.4335 1 2057300 + 6662 26253 4525 4627 7752 7752 -0.04126333668045845 DSGDDDSDEDD 11 Unmodified _DSGDDDSDEDD_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.6710205078125 2 592.670916 1183.32728 NaN NaN NaN NaN NaN NaN NaN 22.557 1 22.575 22.075 23.075 0.01749 0 0 0 0.9435 1 11588 11588 0 0 1 + 6663 21189 4526 4628 7753 7753 -0.2570509986931029 DSGLPVGV 8 Unmodified _DSGLPVGV_ 0 0 0 REV__ENST00000336798.11_2_1:31350222-31350498:-|nuORF REV__ENST00000336798.11_2_1:31350222-31350498:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2204284667969 2 372.200336 742.386119 0.0834 3.1041E-05 1.8908 0.00070374 1.9742 0.00073479 372.1997262947539 41.192 0.48702 41.19 40.851 41.338 -0.0017929 35 23 3 0 0 0 8.7369 1 22004 22004 0.79363 0.79363 1 3301900 + 6664 25652 4527 4629 7754 7754 0.004621625349614078 DSHDFNLVNMA 11 Unmodified _DSHDFNLVNMA_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.5213317871094 3 421.520522 1261.53974 NaN NaN NaN NaN NaN NaN NaN 16.755 1 16.755 16.255 17.255 0 0 0 0 0.94165 1 8199 8199 1.3296 0.55311 1 + 6665 20929 4528 4630 7755 7755 -0.08057215481699131 DSHLHSIYI 9 Unmodified _DSHLHSIYI_ 0 0 0 REV__nc|ENSG00000168405|Q9Y471-4|CMAHP REV__nc|ENSG00000168405|Q9Y471-4|CMAHP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1855163574219 3 362.185579 1083.53491 0.06371 2.3075E-05 0.89507 0.00032418 0.95878 0.00034726 362.1858361962862 37.896 0.42782 37.896 37.68 38.108 0 50 20 4 0 0 0 0.30562 1 20185 20185 11.495 2.7493 1 8427500 + 6666 29769 4529 4631 7756 7756 -0.0035173156215932977 DSHLHSIYI 9 Unmodified _DSHLHSIYI_ 0 0 0 REV__nc|ENSG00000168405|Q9Y471-4|CMAHP REV__nc|ENSG00000168405|Q9Y471-4|CMAHP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 362.185579 1083.53491 0.06371 2.3075E-05 0.89507 0.00032418 0.95878 0.00034726 362.1858361962862 37.896 0.42782 37.896 37.68 38.108 0 0.015546 -0.00010977 NaN 11.495 50 20 4 NaN NaN NaN NaN 0 NaN NaN 0 8427500 + 6667 29769 4529 4631 -0.0035173156215932977 DSIHILNEEY 10 Unmodified _DSIHILNEEY_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.792724609375 2 616.793318 1231.57208 1.0563 0.0006515 -0.084171 -5.1916E-05 0.97209 0.00059958 616.793034259082 54.379 0.23775 54.379 54.246 54.484 0 22 10 3 0 0 0 0.61603 1 30186 30186 16.149 9.4259 1 2554200 6668 5632 4530 4632 7757 7757 -0.03444104807022086 DSKRVPRDKL 10 Unmodified _DSKRVPRDKL_ 0 0 0 ENST00000461017.1_1_7:66262359-66272860:+|nuORF;ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1 ENST00000461017.1_1_7:66262359-66272860:+|nuORF ENST00000461017.1_1_7:66262359-66272860:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2391662597656 3 405.238566 1212.69387 1.2473 0.00050546 -0.73109 -0.00029627 0.51623 0.00020919 405.2382024262252 20.175 0.56289 17.519 17.275 17.838 -2.6564 141 35 5 0 0 0 0.50362 1 10863 10863 10.315 0.77126 1 419900000 6669 6344 4531 4633 7758 7758 0.09602982065985088 DSKRYRYVY 9 Unmodified _DSKRYRYVY_ 0 0 0 nc|ENSG00000122145|Q9Y458-2|TBX22;ENSG00000122145|ENST00000373296|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2157287597656 3 417.21565 1248.62512 0.79217 0.0003305 -0.38179 -0.00015929 0.41038 0.00017122 417.21561958556185 26.988 0.20532 23.951 23.854 24.059 -3.0365 13 10 2 0 0 0 0.43515 1 14942 14942 10.8 2.3552 1 9559200 6670 3625 4532 4634 7759 7759 0.010753177662763846 DSKSLTLEDL 10 Unmodified _DSKSLTLEDL_ 0 0 0 REV__CON__P02535-1 REV__CON__P02535-1 MSMS AL20221201_MKP_PDAC_01 4 374.1943054199219 3 374.195921 1119.56593 NaN NaN NaN NaN NaN NaN NaN 19.895 1 17.238 16.738 17.738 -2.6564 0 0 0 0.91092 1 10570 10570 7.4771 2.0744 1 + + 6671 16838 4533 4635 7760 7760 0.010933769614211997 DSLASLPEWQE 11 Unmodified _DSLASLPEWQE_ 0 0 0 ENSG00000283528|ENST00000636941|TCAF2C;nc|ENSG00000170379|A6NFQ2-3|TCAF2;ENSG00000170379|ENST00000684770|TCAF2 ENSG00000283528|ENST00000636941|TCAF2C ENSG00000283528|ENST00000636941|TCAF2C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3211059570312 2 637.7986 1273.58265 0.36738 0.00023431 -1.0132 -0.00064624 -0.64586 -0.00041193 638.2990432087554 47.906 0.20422 47.906 47.81 48.014 0 16 9 2 0 0 0 0.30139 1 26231 26231 5.7319 1.4026 1 1464800 6672 7977 4534 4636 7761 7761 -0.043201221526032896 DSLDGYHSF 9 Unmodified _DSLDGYHSF_ 0 0 0 nc|ENSG00000165071|Q6P5X7-3|TMEM71;nc|ENSG00000165071|Q6P5X7-2|TMEM71;ENSG00000165071|ENST00000677595|TMEM71 nc|ENSG00000165071|Q6P5X7-3|TMEM71 nc|ENSG00000165071|Q6P5X7-3|TMEM71 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7201538085938 2 520.719621 1039.42469 0.79498 0.00041396 -0.076597 -3.9886E-05 0.71839 0.00037408 520.7196526968813 43.518 0.37219 38.753 38.595 38.967 -4.7648 50 23 3 0 0 0 0.14602 1 26367 26367 28.487 5.3384 1 18349000 6673 7285 4535 4637 7762 7762 -0.09344576621174383 DSLWQRPS 8 Unmodified _DSLWQRPS_ 0 0 0 ENST00000513169.1_1_5:176737530-176738842:-|nuORF ENST00000513169.1_1_5:176737530-176738842:-|nuORF ENST00000513169.1_1_5:176737530-176738842:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 988.5697021484375 1 988.48467 987.477394 2.3449 0.0023179 2.8719 0.0028388 5.2168 0.0051567 988.4879328607988 94.643 0.12731 94.658 94.568 94.695 0.014244 6 4 2 0 0 0 8.7369 1 52603 52603 11.64 0.81637 1 1929200 6674 14633 4536 4638 7763 7763 -0.016845737677158468 DSNGAILVY 9 Unmodified _DSNGAILVY_ 0 0 0 ENST00000547246.1_1_12:72164401-72167858:+|nuORF;ENSG00000080371|ENST00000261263|RAB21 ENST00000547246.1_1_12:72164401-72167858:+|nuORF ENST00000547246.1_1_12:72164401-72167858:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.4794311523438 1 951.478188 950.470912 -0.00018893 -1.7976E-07 -0.7389 -0.00070304 -0.73908 -0.00070322 951.4774015760307 57.632 0.44975 57.632 57.395 57.845 0 58 21 3 0 0 0 0.024882 2 31987 31987;32096 58.679 18.721 1 42664000 6675 1296 4537 4639 7764;7765 7764 -0.006305117190890996 DSNGAILVY 9 Unmodified _DSNGAILVY_ 0 0 0 ENST00000547246.1_1_12:72164401-72167858:+|nuORF;ENSG00000080371|ENST00000261263|RAB21 ENST00000547246.1_1_12:72164401-72167858:+|nuORF ENST00000547246.1_1_12:72164401-72167858:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2432861328125 2 476.242732 950.470912 0.53646 0.00025548 -0.95836 -0.00045641 -0.4219 -0.00020093 476.2422419327015 57.623 0.47416 57.623 57.371 57.845 0 57 22 3 0 0 0 0.039985 2 32006 32006;32111 49.933 23.049 1 34911000 6676 1296 4537 4639 7766;7767 7766 -0.006305117190890996 DSNGAILVY 9 Unmodified _DSNGAILVY_ 0 0 0 ENST00000547246.1_1_12:72164401-72167858:+|nuORF;ENSG00000080371|ENST00000261263|RAB21 ENST00000547246.1_1_12:72164401-72167858:+|nuORF ENST00000547246.1_1_12:72164401-72167858:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4789428710938 1 951.478188 950.470912 0.38534 0.00036664 0.23656 0.00022508 0.6219 0.00059172 951.4783907144483 66.989 0.4353 60.813 60.599 61.035 -6.1757 54 24 3 0 0 0 0.009483 3 43610 43481;43532;43610 81.89 9.0024 1 48792000 6677 1296 4537 4639 7768;7769;7770 7770 -0.006305117190890996 DSNGAILVY 9 Unmodified _DSNGAILVY_ 0 0 0 ENST00000547246.1_1_12:72164401-72167858:+|nuORF;ENSG00000080371|ENST00000261263|RAB21 ENST00000547246.1_1_12:72164401-72167858:+|nuORF ENST00000547246.1_1_12:72164401-72167858:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2428283691406 2 476.242732 950.470912 0.6775 0.00032266 0.4375 0.00020836 1.115 0.00053101 476.2425075660813 66.983 0.8069 60.807 60.245 61.052 -6.1757 86 45 3 0 0 0 0.024882 1 43616 43616 58.679 26.562 1 58840000 6678 1296 4537 4639 7771 7771 -0.006305117190890996 DSNQKERMW 9 Unmodified _DSNQKERMW_ 0 0 0 REV__nc|ENSG00000130939|O95155-3|UBE4B REV__nc|ENSG00000130939|O95155-3|UBE4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5176696777344 3 398.517112 1192.52951 1.0964 0.00043693 0.99132 0.00039506 2.0877 0.00083198 398.51743699286703 21.899 0.35864 19.164 18.995 19.354 -2.7348 43 20 3 0 0 0 0.54213 1 11741 11741 4.897 0.70751 1 4061900 + 6679 19753 4538 4640 7772 7772 -0.05905778416263274 DSPDSDEEEM 10 Unmodified _DSPDSDEEEM_ 0 0 0 ENSG00000105072|ENST00000221671|C19orf44;nc|nan|Q9H6X5-2|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.1931762695312 2 577.195516 1152.37648 0.35115 0.00020268 -1.8177 -0.0010492 -1.4666 -0.00084649 577.1944641492787 58.902 0.27728 58.902 58.768 59.045 0 19 12 2 0 0 0 0.67033 1 32778 32778 6.2058 2.6093 1 1323500 6680 2274 4539 4641 7773 7773 -0.1936148311406214 DSPPECLS 8 Unmodified _DSPPECLS_ 0 0 0 ENSG00000117707|ENST00000366958|PROX1 ENSG00000117707|ENST00000366958|PROX1 ENSG00000117707|ENST00000366958|PROX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.1788330078125 2 424.178743 846.342934 NaN NaN NaN NaN NaN NaN NaN 16.973 1 16.973 16.473 17.473 0 0 0 0 0.97444 1 8327 8327 2.3027 0 1 6681 3334 4540 4642 7774 7774 -0.08638395304649293 DSPSCEYSRF 10 Unmodified _DSPSCEYSRF_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.4982299804688 3 397.497606 1189.47099 1.1214 0.00044574 1.2803 0.00050893 2.4017 0.00095466 397.8324012486961 32.159 0.34463 28.37 28.201 28.546 -3.7881 32 20 2 0 0 0 0.66569 1 18275 18275 3.5871 0 1 16316000 6682 3800 4541 4643 7775 7775 -0.1161687978142254 DSQSLYIVY 9 Unmodified _DSQSLYIVY_ 0 0 0 ENST00000229340.9_1_12:120534221-120535049:-|nuORF ENST00000229340.9_1_12:120534221-120535049:-|nuORF ENST00000229340.9_1_12:120534221-120535049:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7955932617188 2 544.268947 1086.52334 -0.38642 -0.00021032 -0.81028 -0.00044101 -1.1967 -0.00065132 544.7687568626534 41.302 0.18964 41.302 41.174 41.364 0 10 8 2 0 0 0 0.20727 1 22296 22296 7.9102 0 1 3176500 6683 11061 4542 4644 7776 7776 -0.016459733761621465 DSRNAMNQDM 10 Unmodified _DSRNAMNQDM_ 0 0 0 ENSG00000120457|ENST00000529694|KCNJ5 ENSG00000120457|ENST00000529694|KCNJ5 ENSG00000120457|ENST00000529694|KCNJ5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.4938354492188 3 394.493978 1180.46011 NaN NaN NaN NaN NaN NaN NaN 74.807 1 74.807 74.307 75.307 0 0 0 0 0.99008 1 41620 41620 1.7423 0.67081 1 6684 3517 4543 4645 7777 7777 -0.12290605427347145 DSSDRALVDA 10 Unmodified _DSSDRALVDA_ 0 0 0 REV__nc|ENSG00000188522|A6ND36-2|FAM83G REV__nc|ENSG00000188522|A6ND36-2|FAM83G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1676940917969 3 350.168366 1047.48327 NaN NaN NaN NaN NaN NaN NaN 59.103 1 59.103 58.603 59.603 0 0 0 0 0.97302 1 32923 32923 1.7423 0 1 + 6685 23714 4544 4646 7778 7778 -0.03857520046722129 DSSPGEPF 8 Unmodified _DSSPGEPF_ 0 0 0 ENSG00000081913|ENST00000262719|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 835.3480834960938 1 835.346839 834.339563 0.40976 0.00034229 0.28743 0.0002401 0.69719 0.0005824 835.3469475106433 45.174 0.41266 40.322 40.115 40.528 -4.852 44 27 2 0 0 0 0.5284 1 27719 27719 32.117 3.6301 1 18595000 6686 1334 4545 4647 7779 7779 -0.08423322086991902 DSTKYLYYF 9 Unmodified _DSTKYLYYF_ 0 0 0 ENST00000502271.5_1_5:53181920-53182097:-|nuORF ENST00000502271.5_1_5:53181920-53182097:-|nuORF ENST00000502271.5_1_5:53181920-53182097:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2849731445312 2 600.284597 1198.55464 0.50855 0.00030527 0.1785 0.00010715 0.68705 0.00041242 600.2846114906481 86.835 0.95689 86.332 85.699 86.656 -0.50318 85 39 3 0 0 0 0.58466 1 47633 47633 2.3027 0 1 2808000 6687 14451 4546 4648 7780 7780 -0.036694003420507215 DSVLAVGF 8 Unmodified _DSVLAVGF_ 0 0 0 ENSG00000149499|ENST00000394773|EML3;nc|ENSG00000149499|Q32P44-2|EML3 ENSG00000149499|ENST00000394773|EML3 ENSG00000149499|ENST00000394773|EML3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2164306640625 2 404.215986 806.417419 0.87905 0.00035532 0.28513 0.00011525 1.1642 0.00047058 404.2160300947697 65.03 0.42775 58.855 58.644 59.072 -6.1757 41 23 2 0 0 0 0.72953 2 42137 42137;42269 14.582 1.0738 1 23853000 6688 6014 4547 4649 7781;7782 7781 0.00646735569057455 DSVQGKSTVSE 11 Unmodified _DSVQGKSTVSE_ 0 0 0 ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2 ENSG00000163535|ENST00000357799|SGO2 ENSG00000163535|ENST00000357799|SGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7756958007812 2 568.775125 1135.5357 0.30429 0.00017307 0.84405 0.00048007 1.1483 0.00065314 568.7755743515198 85.471 0.41989 79.295 79.075 79.495 -6.1757 45 25 2 0 0 0 0.47965 1 56299 56299 17.443 0.87677 1 26002000 6689 7014 4548 4650 7783 7783 -0.026649817037423418 DSVRFLLQCK 10 Unmodified _DSVRFLLQCK_ 0 0 0 REV__ENSG00000176971|ENST00000318627|FIBIN REV__ENSG00000176971|ENST00000318627|FIBIN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.4819030761719 3 403.553386 1207.63833 0.33725 0.0001361 0.51368 0.0002073 0.85092 0.00034339 403.5537161800348 24.054 0.32845 21.227 20.995 21.323 -2.8273 25 18 2 0 0 0 0.23552 1 13094 13094 5.7834 0 1 2242600 + 6690 22954 4549 4651 7784 7784 0.042814325540348364 DSWTELLKTF 10 Unmodified _DSWTELLKTF_ 0 0 0 ENST00000530004.5_2_1:51753565-51753826:-|nuORF ENST00000530004.5_2_1:51753565-51753826:-|nuORF ENST00000530004.5_2_1:51753565-51753826:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.317138671875 2 620.316428 1238.6183 0.44968 0.00027894 0.33118 0.00020544 0.78086 0.00048438 620.3166289163909 75.436 0.31942 75.482 75.346 75.665 0.045959 27 14 3 0 0 0 0.1942 1 41601 41601 34.402 17.289 1 4199100 6691 14885 4550 4652 7785 7785 0.008539600950371096 DSWVHLHQG 9 Unmodified _DSWVHLHQG_ 0 0 0 ENST00000538035.5_3_6:24850137-24850882:-|nuORF ENST00000538035.5_3_6:24850137-24850882:-|nuORF ENST00000538035.5_3_6:24850137-24850882:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7560424804688 2 539.756872 1077.49919 -0.30686 -0.00016563 -1.2254 -0.00066139 -1.5322 -0.00082702 539.7561740513046 19.445 0.25879 19.445 19.299 19.558 0 65 24 3 0 0 0 0.5029 1 9772 9772 7.2892 2.96 1 5229400 6692 15000 4551 4653 7786 7786 -0.036457690191582515 DSYAIYKWH 9 Unmodified _DSYAIYKWH_ 0 0 0 REV__ENSG00000164291|ENST00000380009|ARSK REV__ENSG00000164291|ENST00000380009|ARSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.857666015625 3 394.857463 1181.55056 0.16861 6.6576E-05 0.82282 0.0003249 0.99143 0.00039147 394.8577715559133 48.639 0.21901 48.595 48.455 48.674 -0.04369 22 10 3 0 0 0 0.54444 1 26248 26248 2.7352 0.82882 1 2472200 + 6693 21897 4552 4654 7787 7787 -0.03295445045091583 DSYCADPRAF 10 Unmodified _DSYCADPRAF_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.4973449707031 3 382.162446 1143.46551 0.98437 0.00037619 1.81 0.0006917 2.7943 0.0010679 382.16326995417916 31.632 0.25776 27.936 27.864 28.122 -3.6958 23 13 2 0 0 0 0.6966 1 17944 17944 1.5923 0 1 42797000 6694 10627 4553 4655 7788 7788 -0.10048558573225819 DSYLILDEY 9 Unmodified _DSYLILDEY_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7657470703125 2 565.766237 1129.51792 NaN NaN NaN NaN NaN NaN NaN 77.523 1 77.523 77.023 78.023 0 0 0 0 0.36554 1 43096 43096 21.747 11.673 1 6695 4592 4554 4656 7789 7789 -0.041656969586028936 DSYLKYVGWT 10 Unmodified _DSYLKYVGWT_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.304931640625 2 616.303321 1230.59209 0.62507 0.00038523 0.57458 0.00035412 1.1997 0.00073935 616.3036203650024 53.686 0.23323 53.234 53.109 53.342 -0.45173 25 11 3 0 0 0 0.48505 1 29057 29057 17.113 0.96379 1 4686000 6696 2002;3346 4555 4657 7790 7790 -0.01398309076444093 DTAAITVNY 9 Unmodified _DTAAITVNY_ 0 0 0 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2378234863281 2 484.24019 966.465826 -0.082553 -3.9975E-05 0.85648 0.00041474 0.77393 0.00037477 484.242212122875 48.346 0.48855 48.346 48.149 48.638 0 64 23 4 0 0 0 0.30562 1 26611 26611 16.942 1.0951 1 27646000 + 6697 24518 4556 4658 7791 7791 -0.01874815581720668 DTAFDLDVF 9 Unmodified _DTAFDLDVF_ 0 0 0 nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH nc|ENSG00000105953|Q02218-2|OGDH nc|ENSG00000105953|Q02218-2|OGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.74365234375 2 521.740022 1041.46549 0.7513 0.00039198 2.5435 0.0013271 3.2948 0.001719 521.7414988953199 60.91 0.86973 60.91 60.225 61.095 0 96 37 3 0 0 0 0.30562 1 33870 33870 16.942 0 1 3840400 6698 2381 4557 4659 7792 7792 -0.05358235301559944 DTAGLTALF 9 Unmodified _DTAGLTALF_ 0 0 0 REV__nc|ENSG00000205494|A6NMU1|OR52A4P REV__nc|ENSG00000205494|A6NMU1|OR52A4P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4737548828125 1 908.472374 907.465098 0.17483 0.00015883 1.0774 0.00097876 1.2522 0.0011376 908.4732960399759 61.265 0.45802 61.265 60.975 61.433 0 48 19 3 0 0 0 0.30562 1 34050 34050 16.942 4.4107 1 4118700 + 6699 29915 4558 4660 7793 7793 0.007663897692282262 DTAHGRFGNL 10 Unmodified _DTAHGRFGNL_ 0 0 0 REV__ENSG00000143157|ENST00000367876|POGK REV__ENSG00000143157|ENST00000367876|POGK MSMS AL20221201_MKP_PDAC_01 4 363.1803283691406 3 363.180828 1086.52066 NaN NaN NaN NaN NaN NaN NaN 89.813 1 83.637 83.137 84.137 -6.1757 0 0 0 0.97302 1 59295 59295 1.7423 0.089654 1 + 6700 20609 4559 4661 7794 7794 -0.01914383990447277 DTALVLEYY 9 Unmodified _DTALVLEYY_ 0 0 0 ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7735595703125 2 543.771322 1085.52809 0.33811 0.00018385 1.3738 0.00074705 1.7119 0.00093091 543.7719072877103 68.544 0.3904 68.544 68.35 68.74 0 55 17 4 0 0 0 0.12841 1 38160 38160 30.225 8.4782 1 4168200 6701 5243 4560 4662 7795 7795 -0.011250892333919182 DTASCNQSHI 10 Unmodified _DTASCNQSHI_ 0 0 0 REV__ENSG00000173064|ENST00000682272|HECTD4 REV__ENSG00000173064|ENST00000682272|HECTD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7271118164062 2 538.227288 1074.44002 -0.045233 -2.4346E-05 -3.6439 -0.0019612 -3.6891 -0.0019856 538.226808300122 56.333 0.16587 56.333 56.284 56.45 0 11 7 2 0 0 0 0.23227 1 31302 31302 6.7232 2.3939 1 1441300 + 6702 22700 4561 4663 7796 7796 -0.09422033095643201 DTCDDDAY 8 Unmodified _DTCDDDAY_ 0 0 0 REV__ENSG00000182752|ENST00000328252|PAPPA REV__ENSG00000182752|ENST00000328252|PAPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.1450500488281 2 459.145098 916.275642 -0.41273 -0.0001895 -0.44771 -0.00020556 -0.86044 -0.00039507 459.1450815148919 107.51 1.0893 107.46 107.01 108.1 -0.047607 75 35 3 0 0 0 0.81107 3 59497 59497;59593;59695 0 0 1 1453500 + 6703 23293 4562 4664 7797;7798;7799 7797 -0.18584470306268486 DTCRLALVY 9 Carbamidomethyl (C) _DTC(Carbamidomethyl (C))RLALVY_ DTC(1)RLALVY DTC(44)RLALVY 0 1 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7842407226562 2 555.784241 1109.55393 1.081 0.0006008 -1.2661 -0.00070369 -0.18513 -0.00010289 555.7835968473391 63.052 0.58896 56.876 56.526 57.115 -6.1757 124 30 6 0 0 0 0.05483 1 40547 40547 43.772 18.373 1 861490000 6704 1623 4563 4665 7800 7800 154 0.0035348173723832588 DTDSNACNPL 10 Unmodified _DTDSNACNPL_ 0 0 0 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2119140625 2 525.213846 1048.41314 NaN NaN NaN NaN NaN NaN NaN 90.699 1 90.204 89.704 90.704 -0.49457 0 0 0 0.97302 1 49575 49575 3.5965 0.31518 1 + 6705 18805 4564 4666 7801 7801 -0.10913141706828355 DTESDQAAVL 10 Unmodified _DTESDQAAVL_ 0 0 0 REV__nc|ENSG00000115310|Q9NQC3-4|RTN4 REV__nc|ENSG00000115310|Q9NQC3-4|RTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7435302734375 2 524.743293 1047.47203 0.47616 0.00024986 1.3933 0.0007311 1.8694 0.00098097 524.7449879713747 58.786 0.53385 58.786 58.535 59.068 0 40 23 3 0 0 0 0.27276 1 32687 32687 29.082 5.9332 1 3746800 + 6706 18971 4565 4667 7802 7802 -0.04980342140856919 DTFFDPGLLLC 11 Unmodified _DTFFDPGLLLC_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2543334960938 2 620.799557 1239.58456 1.064 0.00066053 -3.6686 -0.0022775 -2.6046 -0.0016169 620.7969873227303 54.494 0.22166 54.494 54.419 54.641 0 11 9 2 0 0 0 0.27972 1 30311 30311 18.146 9.4009 1 536890 + 6707 17073 4566 4668 7803 7803 -0.025647846683341413 DTFFVRAPVL 10 Unmodified _DTFFVRAPVL_ 0 0 0 REV__ENSG00000189339|ENST00000617444|SLC35E2B REV__ENSG00000189339|ENST00000617444|SLC35E2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8851928710938 3 388.885241 1163.63389 -0.10787 -4.1951E-05 -0.079311 -3.0843E-05 -0.18719 -7.2794E-05 388.88552977489775 33.055 0.24956 33.085 32.937 33.186 0.029743 19 10 3 0 0 0 0.69385 1 17385 17385 3.5871 1.0886 1 915740 + 6708 23778 4567 4669 7804 7804 0.05862291402763731 DTFLEYVKL 9 Unmodified _DTFLEYVKL_ 0 0 0 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MSMS AL20221201_MKP_PDAC_01 4 376.5397033691406 3 376.537619 1126.59103 NaN NaN NaN NaN NaN NaN NaN 79.294 1 73.118 72.618 73.618 -6.1757 0 0 0 0.6306 1 51949 51949 7.609 0.97858 1 + 6709 19358 4568 4670 7805 7805 0.032794765546668714 DTFRRRRWRRK 11 Unmodified _DTFRRRRWRRK_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 816.97607421875 2 816.974548 1631.93454 NaN NaN NaN NaN NaN NaN NaN 77.57 1 77.087 76.587 77.587 -0.4826 0 0 0 0.9435 1 42467 42467 0 0 1 6710 5021 4569 4671 7806 7806 0.14385235896565973 DTGPIIYASL 10 Unmodified _DTGPIIYASL_ 0 0 0 REV__ENSG00000122121|ENST00000371106|XPNPEP2 REV__ENSG00000122121|ENST00000371106|XPNPEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2792358398438 2 525.279315 1048.54408 0.27938 0.00014675 0.041047 2.1561E-05 0.32043 0.00016832 525.2792971965184 96.054 0.57699 95.749 95.501 96.078 -0.30472 83 32 3 0 0 0 0.42068 2 52462 52366;52462 20.454 3.3407 1 5927400 + 6711 19328 4570 4672 7807;7808 7808 0.02174617003538515 DTGTLPDVIH 10 Unmodified _DTGTLPDVIH_ 0 0 0 REV__ENST00000376896.7_1_9:77112303-77112348:+|nuORF REV__ENST00000376896.7_1_9:77112303-77112348:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8113403320312 2 534.272021 1066.52949 0.56558 0.00030217 -0.18518 -9.8935E-05 0.3804 0.00020324 534.2717748235881 67.822 0.13589 67.34 67.255 67.391 -0.48218 7 5 2 0 0 0 0.21571 1 37046 37046 25.399 1.3787 1 273280 + 6712 26235 4571 4673 7809 7809 -0.0011145514463350992 DTGYDWFEQL 10 Unmodified _DTGYDWFEQL_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.185546875 3 425.183904 1272.52988 1.3733 0.00058388 0.37902 0.00016115 1.7523 0.00074504 425.1840339567246 20.687 0.51994 17.995 17.666 18.186 -2.693 54 31 2 0 0 0 0.71276 1 10934 10934 0.62683 0.17231 1 2884000 6713 7161 4572 4674 7810 7810 -0.09548080215427035 DTHHIDLVEL 10 Unmodified _DTHHIDLVEL_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.3045654296875 2 596.303852 1190.59315 -0.19306 -0.00011512 -1.1029 -0.00065767 -1.296 -0.0007728 596.303669514436 55.118 0.25486 55.118 54.986 55.241 0 23 10 3 0 0 0 0.44373 1 30606 30606 19.257 2.1441 1 1384700 + 6714 21413 4573 4675 7811 7811 0.005479052925011274 DTHTNTYY 8 Unmodified _DTHTNTYY_ 0 0 0 nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7591247558594 2 507.711796 1013.40904 0.74486 0.00037818 -2.0333 -0.0010323 -1.2885 -0.00065417 508.2107129478745 47.514 0.21941 47.514 47.339 47.558 0 11 9 2 0 0 0 8.7369 1 26040 26040 5.7604 0 1 538540 6715 880 4574 4676 7812 7812 -0.09712863138236116 DTIFKNAEFL 10 Unmodified _DTIFKNAEFL_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3644409179688 2 599.311146 1196.60774 0.27034 0.00016201 -0.53332 -0.00031962 -0.26298 -0.00015761 599.3103094424116 78.893 0.33992 78.407 78.213 78.553 -0.48596 22 13 2 0 0 0 0.23566 1 43151 43151 7.2892 0.56607 1 1225100 6716 8543 4575 4677 7813 7813 0.01729977440595576 DTIYFFFYYHQ 11 Unmodified _DTIYFFFYYHQ_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2351684570312 3 515.234599 1542.68197 0.60844 0.00031349 0.87711 0.00045192 1.4856 0.00076541 515.569278186201 50.877 0.17415 50.877 50.821 50.996 0 15 9 2 0 0 0 0.71341 1 28083 28083 1.2148 0.20126 1 3328900 + 6717 28142 4576 4678 7814 7814 -0.06766679467841641 DTIYFFFYYHQ 11 Unmodified _DTIYFFFYYHQ_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 515.234599 1542.68197 0.60844 0.00031349 0.87711 0.00045192 1.4856 0.00076541 515.569278186201 50.877 0.17415 50.877 50.821 50.996 0 -0.1343 4.3419E-06 NaN 1.2148 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3328900 + 6718 28142 4576 4678 -0.06766679467841641 DTIYFFFYYHQ 11 Unmodified _DTIYFFFYYHQ_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 515.234599 1542.68197 -0.18098 -9.3245E-05 0.8718 0.00044918 0.69082 0.00035594 515.2348715226135 51.559 0.18393 51.146 51.046 51.23 -0.41351 0.1343 -3.8668E-06 NaN 1.2148 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3632200 + 6719 28142 4576 4678 -0.06766679467841641 DTLDKVFTY 9 Unmodified _DTLDKVFTY_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2772216796875 2 551.276772 1100.53899 0.3998 0.0002204 -0.47201 -0.00026021 -0.072214 -3.981E-05 551.276484550157 58.84 0.34741 58.84 58.677 59.024 0 29 15 2 0 0 0 0.021948 2 32728 32728;32847 61.602 32.52 1 20765000 6720 3739 4577 4679 7815;7816 7815 -0.007256868590729937 DTLDKVFTY 9 Unmodified _DTLDKVFTY_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.27392578125 2 551.276772 1100.53899 0.3859 0.00021274 -0.31006 -0.00017093 0.075842 4.181E-05 551.276876956123 59.458 0.50043 58.967 58.792 59.293 -0.49079 51 23 3 0 0 0 0.010301 2 32287 32287;32391 79.596 33.897 1 20124000 6721 3739 4577 4679 7817;7818 7817 -0.007256868590729937 DTLDKVFTY 9 Unmodified _DTLDKVFTY_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.276772 1100.53899 0.42747 0.00023565 0.27739 0.00015292 0.70486 0.00038857 551.2770014880002 59.107 0.14261 59.046 58.943 59.085 -0.060719 0.095196 0.00071691 NaN 79.596 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1146700 6722 3739 4577 4679 -0.007256868590729937 DTLFHWYL 8 Unmodified _DTLFHWYL_ 0 0 0 REV__nc|ENSG00000134779|Q68CL5-3|TPGS2 REV__nc|ENSG00000134779|Q68CL5-3|TPGS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2704467773438 2 547.768917 1093.52328 0.57066 0.00031259 -1.0343 -0.00056657 -0.46366 -0.00025398 548.2697270546353 99.607 0.16644 93.431 93.324 93.49 -6.1757 12 10 2 0 0 0 0.65867 1 66417 66417 20.871 2.7362 1 31540000 + 6723 20010 4578 4680 7819 7819 -0.019739285854939226 DTLKLPPTFF 10 Unmodified _DTLKLPPTFF_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8280029296875 2 589.826432 1177.63831 NaN NaN NaN NaN NaN NaN NaN 100.99 1 100.95 100.45 101.45 -0.04216 0 0 0 0.97302 1 56104 56104 3.5965 0.31518 1 6724 6246 4579 4681 7820 7820 0.05659755825627144 DTLLIDRLL 9 Unmodified _DTLLIDRLL_ 0 0 0 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2;nc|ENSG00000178460|Q4G0Z9-2|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.326904296875 2 536.324057 1070.63356 0.017599 9.4389E-06 3.7663 0.00202 3.7839 0.0020294 536.3246210094435 37.952 0.25073 37.969 37.859 38.11 0.01704 15 11 2 0 0 0 0.25681 1 20213 20213 19.257 2.1441 1 2488500 6725 8754 4580 4682 7821 7821 0.10106871682887686 DTLLSNAKHL 10 Unmodified _DTLLSNAKHL_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MSMS AL20221201_MKP_PDAC_01 4 556.308349609375 2 556.308938 1110.60332 NaN NaN NaN NaN NaN NaN NaN 100.04 1 93.867 93.367 94.367 -6.1757 0 0 0 0.71851 1 66807 66807 15.847 1.9411 1 6726 4529 4581 4683 7822 7822 0.0524451301771478 DTLRHENDDWR 11 Unmodified _DTLRHENDDWR_ 0 0 0 REV__nc|ENSG00000075651|Q13393-4|PLD1 REV__nc|ENSG00000075651|Q13393-4|PLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2243347167969 3 486.223644 1455.6491 0.58042 0.00028221 1.6236 0.00078943 2.204 0.0010716 486.22458460421007 52.661 0.64517 52.228 51.83 52.475 -0.43367 52 32 2 0 0 0 0.71618 1 28378 28378 2.4348 1.9288 1 6883900 + 6727 17573 4582 4684 7823 7823 -0.06049493538034767 DTLWRPMPKL 10 Unmodified _DTLWRPMPKL_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8435668945312 2 628.844633 1255.67471 NaN NaN NaN NaN NaN NaN NaN 37.577 1 37.594 37.094 38.094 0.01704 0 0 0 0.97302 1 19954 19954 3.5965 0 1 6728 8400 4583 4685 7824 7824 0.05710309450728346 DTMSEFSSLRW 11 Unmodified _DTMSEFSSLRW_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.1337280273438 2 679.805902 1357.59725 NaN NaN NaN NaN NaN NaN NaN 69.432 1 69.463 68.963 69.963 0.030914 0 0 0 0.94032 1 38165 38165 2.2828 0.22302 1 + 6729 20661 4584 4686 7825 7825 -0.06724373276119877 DTQKPHFF 8 Unmodified _DTQKPHFF_ 0 0 0 nc|ENSG00000144130|Q86YG4|NT5DC4;ENSG00000144130|ENST00000688554|NT5DC4 nc|ENSG00000144130|Q86YG4|NT5DC4 nc|ENSG00000144130|Q86YG4|NT5DC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2499389648438 2 510.250892 1018.48723 NaN NaN NaN NaN NaN NaN NaN 17.998 1 18.012 17.512 18.512 0.013865 0 0 0 0.97444 1 8992 8992 0.79363 0.10326 1 6730 5586 4585 4687 7826 7826 -0.021273857623327785 DTQQTQAMAK 10 Unmodified _DTQQTQAMAK_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-6|PKD1L2;nc|ENSG00000166473|Q7Z442-4|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7660522460938 2 561.266413 1120.51827 0.77192 0.00043326 2.3809 0.0013363 3.1528 0.0017696 561.2676807322874 30.324 0.56585 30.244 30.027 30.593 -0.080429 28 21 2 0 0 0 0.23896 1 15635 15635 3.5965 0 1 1257400 6731 16354 4586 4688 7827 7827 -0.037166005104154465 DTRRAPVF 8 Unmodified _DTRRAPVF_ 0 0 0 REV__ENSG00000086015|ENST00000361297|MAST2 REV__ENSG00000086015|ENST00000361297|MAST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.26416015625 2 481.264333 960.514114 NaN NaN NaN NaN NaN NaN NaN 64.329 1 64.329 63.829 64.829 0 0 0 0 0.97444 1 35874 35874 2.5775 0.51773 1 + 6732 17762 4587 4689 7828 7828 0.032277228488510445 DTRRISLRF 9 Unmodified _DTRRISLRF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5560913085938 3 388.55964 1162.65709 0.30158 0.00011718 1.864 0.00072428 2.1656 0.00084146 388.5602242450175 41.021 0.44338 40.718 40.543 40.986 -0.30304 67 21 5 0 0 0 0.40615 1 21827 21827 12.175 3.1985 1 69445000 6733 2128 4588 4690 7829 7829 0.08226730240107827 DTSTHFHQTF 10 Unmodified _DTSTHFHQTF_ 0 0 0 ENSG00000157851|ENST00000288699|DPYSL5 ENSG00000157851|ENST00000288699|DPYSL5 ENSG00000157851|ENST00000288699|DPYSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.77099609375 2 610.770177 1219.5258 0.26178 0.00015989 -0.59706 -0.00036466 -0.33528 -0.00020478 610.7704198454688 68.949 0.25181 68.469 68.352 68.604 -0.48071 27 10 3 0 0 0 0.44373 1 37677 37677 19.257 7.6167 1 3571500 6734 6545 4589 4691 7830 7830 -0.07518124918487956 DTSWALLYF 9 Unmodified _DTSWALLYF_ 0 0 0 nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;ENST00000472429.1_1_21:30971125-31311818:-|nuORF nc|ENSG00000171189|P39086-2|GRIK1 nc|ENSG00000171189|P39086-2|GRIK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2711181640625 2 558.274032 1114.53351 1.1379 0.00063526 -2.4896 -0.0013899 -1.3517 -0.00075459 558.2730016441242 54.429 0.22417 54.429 54.352 54.576 0 22 9 3 0 0 0 0.2001 1 30215 30215 23.148 1.4018 1 7544400 6735 8075 4590 4692 7831 7831 -0.019173656509110515 DTTFGLAAGVF 11 Unmodified _DTTFGLAAGVF_ 0 0 0 nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1 nc|ENSG00000143149|P49189-2|ALDH9A1 nc|ENSG00000143149|P49189-2|ALDH9A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.779052734375 2 549.776939 1097.53933 0.34872 0.00019172 0.7723 0.00042459 1.121 0.00061631 549.7774455203946 53.086 0.74923 52.635 52.338 53.087 -0.45173 85 37 4 0 0 0 0.46578 1 28816 28816 18.146 3.3081 1 39743000 6736 5466 4591 4693 7832 7832 -0.005542671392504417 DTTKVPVYLV 10 Unmodified _DTTKVPVYLV_ 0 0 0 REV__nc|ENSG00000101746|O94818-2|NOL4 REV__nc|ENSG00000101746|O94818-2|NOL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7857055664062 2 567.823889 1133.63323 0.71186 0.00040421 -3.6697 -0.0020838 -2.9579 -0.0016795 567.8214380289692 48.051 0.17678 47.698 47.634 47.81 -0.3526 14 7 2 0 0 0 0.22811 1 25816 25816 10.074 0 1 4968800 + 6737 18192 4592 4694 7833 7833 0.07175451963030355 DTVDAHTNAY 10 Unmodified _DTVDAHTNAY_ 0 0 0 REV__ENST00000314393.5_1_8:123793760-123875761:+|nuORF REV__ENST00000314393.5_1_8:123793760-123875761:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7411499023438 2 553.741085 1105.46762 NaN NaN NaN NaN NaN NaN NaN 44.451 1 44.451 43.951 44.951 0 0 0 0 0.83398 1 24185 24185 10.824 2.2306 1 + 6738 25445 4593 4695 7834 7834 -0.08089806563771162 DTVHILETY 9 Unmodified _DTVHILETY_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7744140625 2 545.774396 1089.53424 0.87188 0.00047585 -1.0828 -0.00059096 -0.21092 -0.00011511 545.7740933795008 54.296 0.22525 54.296 54.173 54.398 0 25 9 3 0 0 0 0.06187 1 30125 30125 42.095 20.348 1 3302500 6739 6072 4594 4696 7835 7835 -0.006945710018499085 DTVQLDQLEY 10 Unmodified _DTVQLDQLEY_ 0 0 0 REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2928466796875 2 612.29315 1222.57175 0.61357 0.00037569 1.5376 0.00094146 2.1512 0.0013171 612.2939225282613 36.352 0.39967 36.352 36.167 36.566 0 49 19 3 0 0 0 0.35903 1 19318 19318 24.021 1.2843 1 7352300 + 6740 22352 4595 4697 7836 7836 -0.030635245268967992 DTVRFVHVY 9 Unmodified _DTVRFVHVY_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.29931640625 2 568.298373 1134.58219 NaN NaN NaN NaN NaN NaN NaN 44.646 1 44.33 43.83 44.83 -0.31585 0 0 0 0.074615 1 23826 23826 49.933 34.086 1 6741 3197 4596 4698 7837 7837 0.02028547708869155 DTVRFVHVY 9 Unmodified _DTVRFVHVY_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2003173828125 3 379.201341 1134.58219 -0.21061 -7.9865E-05 0.40707 0.00015436 0.19645 7.4495E-05 379.5360057914574 44.616 0.16154 44.3 44.204 44.366 -0.31585 9 7 2 0 0 0 0.069627 1 23815 23815 34.932 28.302 1 10774000 6742 3197 4596 4698 7838 7838 0.02028547708869155 DTVSEKSK 8 Unmodified _DTVSEKSK_ 0 0 0 REV__nc|ENSG00000117226|Q9H0R5-4|GBP3 REV__nc|ENSG00000117226|Q9H0R5-4|GBP3 MSMS AL20221201_MKP_PDAC_01 4 447.2297668457031 2 447.232364 892.450176 NaN NaN NaN NaN NaN NaN NaN 53.578 1 47.774 47.274 48.274 -5.8042 0 0 0 0.4392 1 33882 33882 48.346 0 1 + 6743 19092 4597 4699 7839 7839 -0.000351020987523043 DTWFYITYEKD 11 Unmodified _DTWFYITYEKD_ 0 0 0 ENSG00000186767|ENST00000374884|SPIN4 ENSG00000186767|ENST00000374884|SPIN4 ENSG00000186767|ENST00000374884|SPIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 740.8338623046875 2 740.835182 1479.65581 0.13208 9.785E-05 -1.5968 -0.001183 -1.4647 -0.0010851 740.8338223952825 68.255 0.33843 68.255 68.124 68.463 0 39 15 3 0 0 0 0.7326 2 38026 38026;38123 1.1933 0 1 2041600 6744 9503 4598 4700 7840;7841 7840 -0.06482993430017814 DTWPLNLTF 9 Unmodified _DTWPLNLTF_ 0 0 0 REV__nc|ENSG00000103546|P23975-3|SLC6A2 REV__nc|ENSG00000103546|P23975-3|SLC6A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7799682617188 2 553.779482 1105.54441 0.28264 0.00015652 0.33963 0.00018808 0.62227 0.0003446 553.7799627255016 71.806 0.54651 71.806 71.548 72.095 0 58 24 3 0 0 0 0.45045 1 40006 40006 10.074 1.4806 1 2491300 + 6745 18315 4599 4701 7842 7842 -0.004139632766509749 DTYAVSPTR 9 Unmodified _DTYAVSPTR_ 0 0 0 REV__nc|ENSG00000125813|P15863-3|PAX1 REV__nc|ENSG00000125813|P15863-3|PAX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2525939941406 2 505.251089 1008.48762 -0.24038 -0.00012145 3.4506 0.0017434 3.2102 0.001622 505.2527149505596 43.233 0.32483 42.923 42.72 43.045 -0.31039 23 15 2 0 0 0 0.14602 1 22976 22976 28.487 3.0875 1 7389800 + 6746 29617 4600 4702 7843 7843 -0.016280108331329757 DTYKIDRGF 9 Unmodified _DTYKIDRGF_ 0 0 0 ENST00000483099.5_1_1:203831312-203832827:+|nuORF ENST00000483099.5_1_1:203831312-203832827:+|nuORF ENST00000483099.5_1_1:203831312-203832827:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3009643554688 2 557.780013 1113.54547 0.49634 0.00027685 -0.70289 -0.00039206 -0.20654 -0.00011521 557.7798500211089 59.1 0.3177 58.609 58.432 58.75 -0.49079 29 14 3 0 0 0 0.19613 1 32076 32076 12.532 5.8084 1 5623000 6747 14121 4601 4703 7844 7844 -0.006757489077244827 DTYLTGILI 9 Unmodified _DTYLTGILI_ 0 0 0 nc|ENSG00000221977|Q8NGC2|OR4E2;ENSG00000221977|ENST00000641524|OR4E2 nc|ENSG00000221977|Q8NGC2|OR4E2 nc|ENSG00000221977|Q8NGC2|OR4E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.784423828125 2 504.784233 1007.55391 0.099526 5.0239E-05 0.80828 0.00040801 0.90781 0.00045825 504.7845820984053 75.815 0.70415 75.338 75.062 75.766 -0.47714 87 30 5 0 0 0 0.2001 1 41611 41611 23.148 3.7094 1 47863000 6748 10566 4602 4704 7845 7845 0.050438050089155695 DTYRYETT 8 Unmodified _DTYRYETT_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000594221.5_1_19:7706941-7707474:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MSMS AL20221201_MKP_PDAC_01 4 350.19482421875 3 350.157578 1047.4509 NaN NaN NaN NaN NaN NaN NaN 19.022 1 16.401 15.901 16.901 -2.6215 0 0 0 0.97348 1 10049 10049 3.9444 0.94915 1 6749 1199 4603 4705 7846 7846 -0.07092307449715918 DVAAGHDLLF 10 Unmodified _DVAAGHDLLF_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2686157226562 2 529.269281 1056.52401 0.4059 0.00021483 0.29728 0.00015734 0.70319 0.00037218 529.268916138878 50.473 0.34364 50.473 50.259 50.603 0 42 15 4 0 0 0 0.20195 1 27779 27779 39.957 0.0076237 1 5177900 + 6750 21573 4604 4706 7847 7847 -0.0019913393641672883 DVAAIHCGHTF 11 Unmodified _DVAAIHCGHTF_ 0 0 0 ENST00000473863.1_1_3:49881439-49893910:-|nuORF;ENST00000489948.5_1_3:49881200-49893910:-|nuORF;ENST00000477546.5_1_3:49881200-49893910:-|nuORF;ENSG00000183763|ENST00000331456|TRAIP ENST00000473863.1_1_3:49881439-49893910:-|nuORF ENST00000473863.1_1_3:49881439-49893910:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 585.7725830078125 2 585.771665 1169.52878 NaN NaN NaN NaN NaN NaN NaN 31.526 1 27.83 27.33 28.33 -3.6958 0 0 0 0.15837 1 17862 17862 41.84 3.6641 1 6751 9191 4605 4707 7848 7848 -0.04920573065328426 DVAEAGYVF 9 Unmodified _DVAEAGYVF_ 0 0 0 ENSG00000227124|ENST00000652011|ZNF717 ENSG00000227124|ENST00000652011|ZNF717 ENSG00000227124|ENST00000652011|ZNF717 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7286071777344 2 485.729458 969.444362 0.63721 0.00030951 -1.5079 -0.00073244 -0.87071 -0.00042293 485.72839905370626 73.627 0.34416 73.627 73.485 73.83 0 35 14 3 0 0 0 0.12841 1 40979 40979 30.225 1.738 1 2841100 6752 10597 4606 4708 7849 7849 -0.04158200610413587 DVAFSWSN 8 Unmodified _DVAFSWSN_ 0 0 0 ENST00000407426.7_1_2:29135491-29136993:+|nuORF ENST00000407426.7_1_2:29135491-29136993:+|nuORF ENST00000407426.7_1_2:29135491-29136993:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2063293457031 2 463.20615 924.397747 0.58792 0.00027233 -0.53951 -0.00024991 0.048404 2.2421E-05 463.2059228168241 74.969 0.39495 74.492 74.301 74.696 -0.47714 30 16 3 0 0 0 0.78849 1 41105 41105 9.3474 0.75416 1 2616300 6753 12944 4607 4709 7850 7850 -0.067476404417107 DVAPTHILY 9 Unmodified _DVAPTHILY_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7747802734375 2 514.7742 1027.53385 -0.060996 -3.1399E-05 0.61171 0.00031489 0.55072 0.0002835 514.77451470158 52.195 0.33726 52.195 52.039 52.376 0 26 14 2 0 0 0 0.026094 1 28877 28877 57.471 32.797 1 4589400 6754 6855 4608 4710 7851 7851 0.021180540689556437 DVAPVILAAH 10 Unmodified _DVAPVILAAH_ 0 0 0 nc|ENSG00000144935|P48995-2|TRPC1;ENSG00000144935|ENST00000476941|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 nc|ENSG00000144935|P48995-2|TRPC1 MSMS AL20221201_MKP_PDAC_01 4 503.2944946289062 2 503.290017 1004.56548 NaN NaN NaN NaN NaN NaN NaN 79.428 1 73.253 72.753 73.753 -6.1757 0 0 0 0.7417 1 52049 52049 14.838 0.93222 1 6755 5660 4609 4711 7852 7852 0.06338046822895649 DVASFAKKY 9 Unmodified _DVASFAKKY_ 0 0 0 REV__ENSG00000178372|ENST00000380332|CALML5 REV__ENSG00000178372|ENST00000380332|CALML5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7742919921875 2 514.7742 1027.53385 NaN NaN NaN NaN NaN NaN NaN 52.713 1 52.262 51.762 52.762 -0.45173 0 0 0 0.6557 1 28490 28490 10.824 0 1 + 6756 23039 4610 4712 7853 7853 0.021180540689329064 DVATFTQGA 9 Unmodified _DVATFTQGA_ 0 0 0 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.4363403320312 1 909.431238 908.423961 -0.66866 -0.0006081 -0.19846 -0.00018049 -0.86712 -0.00078859 909.4309333913264 34.131 0.34293 34.131 33.926 34.269 0 51 17 4 0 0 0 0.51218 1 17965 17965 6.7232 0.96273 1 69998000 6757 7655 4611 4713 7854 7854 -0.03391371270220134 DVATSYEKAGL 11 Unmodified _DVATSYEKAGL_ 0 0 0 REV__ENSG00000248333|ENST00000341832|CDK11B REV__ENSG00000248333|ENST00000341832|CDK11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2918701171875 2 577.290411 1152.56627 0.4863 0.00028073 -0.061561 -3.5538E-05 0.42474 0.0002452 577.2900036953197 66.461 0.35851 66.461 66.175 66.533 0 21 15 2 0 0 0 0.63851 1 37045 37045 9.3831 1.473 1 1005900 + 6758 24487 4612 4714 7855 7855 -0.0039120331871345115 DVAWQDYD 8 Unmodified _DVAWQDYD_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1010.9072265625 1 1011.40542 1010.39814 0.38569 0.00039009 -0.24071 -0.00024345 0.14498 0.00014663 1011.4072928620701 14.021 0.26024 14.029 13.839 14.099 0.0073986 8 6 2 0 0 0 8.7369 1 6864 6864 2.5775 0 1 10330000 + 6759 23757 4613 4715 7856 7856 -0.10664265512525617 DVCDIVYRY 9 Carbamidomethyl (C) _DVC(Carbamidomethyl (C))DIVYRY_ DVC(1)DIVYRY DVC(54)DIVYRY 0 1 0 ENSG00000066248|ENST00000264051|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF ENSG00000066248|ENST00000264051|NGEF ENSG00000066248|ENST00000264051|NGEF MSMS AL20221201_MKP_PDAC_01 4 601.7794189453125 2 601.779156 1201.54376 NaN NaN NaN NaN NaN NaN NaN 60.809 1 54.662 54.162 55.162 -6.1478 0 0 0 0.059498 1 39136 39136 53.833 30.032 1 6760 931 4614 4716 7857 7857 82 -0.048951259879686404 DVDFDEKMF 9 Unmodified _DVDFDEKMF_ 0 0 0 REV__nc|ENSG00000135775|Q14746-2|COG2 REV__nc|ENSG00000135775|Q14746-2|COG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8322143554688 3 382.498835 1144.47468 NaN NaN NaN NaN NaN NaN NaN 51.084 1 51.084 50.584 51.584 0 0 0 0 0.84369 1 28193 28193 1.1933 0.23107 1 + 6761 20099 4615 4717 7858 7858 -0.09178210007553389 DVDFYCATTFH 11 Unmodified _DVDFYCATTFH_ 0 0 0 ENST00000461652.2_1_13:31835091-31857210:+|nuORF;ENSG00000187676|ENST00000343307|B3GLCT ENST00000461652.2_1_13:31835091-31857210:+|nuORF ENST00000461652.2_1_13:31835091-31857210:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.7755737304688 2 659.774071 1317.53359 0.61347 0.00040475 -0.26683 -0.00017605 0.34663 0.0002287 659.7739157363266 54.32 0.20128 54.32 54.197 54.398 0 14 8 2 0 0 0 0.71341 1 30190 30190 2.9952 1.6657 1 836630 6762 9577 4616 4718 7859 7859 -0.11247733713253183 DVEMETEANL 10 Unmodified _DVEMETEANL_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1 nc|ENSG00000147601|P54274-2|TERF1 nc|ENSG00000147601|P54274-2|TERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7496337890625 2 575.750261 1149.48597 0.46584 0.00026821 -1.4061 -0.00080955 -0.94023 -0.00054134 575.7493748989209 63.291 0.41279 62.804 62.603 63.016 -0.48617 55 18 4 0 0 0 0.6606 1 34461 34461 7.2892 0.56607 1 10509000 6763 5867 4617 4719 7860 7860 -0.08279432704057399 DVEPRPPFD 9 Unmodified _DVEPRPPFD_ 0 0 0 REV__ENSG00000117245|ENST00000400463|KIF17 REV__ENSG00000117245|ENST00000400463|KIF17 MSMS AL20221201_MKP_PDAC_01 4 536.2608032226562 2 536.258914 1070.50327 NaN NaN NaN NaN NaN NaN NaN 27.419 1 24.382 23.882 24.882 -3.0365 0 0 0 0.61214 1 15193 15193 12.241 0.74595 1 + 6764 19094 4618 4720 7861 7861 -0.029157243160852886 DVFCKHPCL 9 Unmodified _DVFCKHPCL_ 0 0 0 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.249267578125 2 531.24898 1060.48341 NaN NaN NaN NaN NaN NaN NaN 76.34 1 75.861 75.361 76.361 -0.47945 0 0 0 0.6032 1 41788 41788 12.532 3.9383 1 6765 10039 4619 4721 7862 7862 -0.04441514852055661 DVFNEKGWNY 10 Unmodified _DVFNEKGWNY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.2890625 2 636.288202 1270.56185 -0.35128 -0.00022351 -1.1272 -0.00071725 -1.4785 -0.00094076 636.2875718024557 56.201 0.25227 56.201 56.049 56.301 0 16 11 2 0 0 0 0.1899 1 31228 31228 34.932 26.187 1 3484100 6766 2369 4620 4722 7863 7863 -0.06260667741616999 DVFNEKGWNY 10 Unmodified _DVFNEKGWNY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.2877807617188 2 636.288202 1270.56185 -0.42615 -0.00027116 0.95683 0.00060882 0.53068 0.00033766 636.2886102081228 56.811 0.24728 56.326 56.205 56.453 -0.48554 31 11 4 0 0 0 0.11322 1 30849 30849 44.392 29.143 1 4126400 6767 2369 4620 4722 7864 7864 -0.06260667741616999 DVFNEKGWNY 10 Unmodified _DVFNEKGWNY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.78955078125 2 636.288202 1270.56185 0.67643 0.0004304 -1.7232 -0.0010964 -1.0468 -0.00066605 636.2873257719626 63.322 0.43096 57.147 57.019 57.45 -6.1757 40 24 2 0 0 0 0.0052757 1 40920 40920 97.741 70.518 1 24679000 6768 2369 4620 4722 7865 7865 -0.06260667741616999 DVFSEPRAVFY 11 Unmodified _DVFSEPRAVFY_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.3275146484375 2 665.327328 1328.6401 0.21509 0.00014311 -0.3678 -0.00024471 -0.15271 -0.0001016 665.3269769798185 68.902 0.20458 68.422 68.376 68.58 -0.48071 12 8 2 0 0 0 0.39848 1 37712 37712 21.59 10.095 1 1173500 6769 895 4621 4723 7866 7866 -0.011072351563825578 DVFSIIQEY 9 Unmodified _DVFSIIQEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7769165039062 2 557.276772 1112.53899 0.43462 0.0002422 0.26099 0.00014545 0.69561 0.00038765 557.2768248541053 92.162 0.30566 92.162 92.03 92.335 0 45 21 3 0 0 0 0.39863 3 51016 50921;50932;51016 12.532 8.5872 1 1115000 6770 7704 4622 4724 7867;7868;7869 7869 -0.012776868590890444 DVFSIIQEY 9 Unmodified _DVFSIIQEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2770385742188 2 557.276772 1112.53899 0.61687 0.00034377 0.23482 0.00013086 0.85169 0.00047463 557.2772008385354 92.805 0.28233 92.348 92.169 92.451 -0.4574 30 12 3 0 0 0 0.30562 1 50675 50675 16.942 4.4107 1 2813500 6771 7704 4622 4724 7870 7870 -0.012776868590890444 DVFSIIQEY 9 Unmodified _DVFSIIQEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.338134765625 2 557.276772 1112.53899 0.45839 0.00025545 0.39223 0.00021858 0.85062 0.00047403 557.2766316057824 99.74 0.21617 93.565 93.448 93.664 -6.1757 36 14 4 0 0 0 0.094631 1 66602 66602 39.957 19.504 1 53981000 6772 7704 4622 4724 7871 7871 -0.012776868590890444 DVFSLHSLFF 10 Unmodified _DVFSLHSLFF_ 0 0 0 REV__ENSG00000174937|ENST00000641993|OR5M3 REV__ENSG00000174937|ENST00000641993|OR5M3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.308349609375 2 606.308406 1210.60226 0.45371 0.00027509 -0.57596 -0.00034921 -0.12225 -7.4119E-05 606.3081759866961 87.439 0.20518 86.934 86.833 87.038 -0.50423 13 8 2 0 0 0 0.69064 1 47822 47822 3.9444 0.068064 1 588130 + 6773 22826 4623 4725 7872 7872 0.005382986487802555 DVFTVVISY 9 Unmodified _DVFTVVISY_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7760009765625 2 521.776408 1041.53826 0.95099 0.0004962 -1.0935 -0.00057056 -0.14252 -7.4361E-05 521.775866822681 99.2 0.27995 93.024 92.894 93.174 -6.1757 35 16 3 0 0 0 0.026094 1 65976 65976 57.471 27.247 1 65146000 6774 5337 4624 4726 7873 7873 0.019155184918645318 DVFYYIEFFT 10 Unmodified _DVFYYIEFFT_ 0 0 0 REV__nc|ENSG00000286135|A0A494C103|SPADH REV__nc|ENSG00000286135|A0A494C103|SPADH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.3107299804688 2 672.313354 1342.61216 -0.021199 -1.4252E-05 -2.0283 -0.0013636 -2.0495 -0.0013779 672.3122163193649 94.409 0.23517 94.409 94.288 94.523 0 34 20 2 0 0 0 0.67033 1 52144 52144 6.2058 2.9245 1 505340 + 6775 30020 4625 4727 7874 7874 -0.045445581364901955 DVGVFHSAP 9 Unmodified _DVGVFHSAP_ 0 0 0 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7282104492188 2 464.729792 927.445031 0.9234 0.00042913 -3.1698 -0.0014731 -2.2464 -0.001044 464.72842187659387 59.973 0.47438 53.858 53.701 54.175 -6.1147 33 25 2 0 0 0 0.038285 1 38693 38693 50.855 3.9342 1 31102000 + 6776 24511;24593 4626 4728 7875 7875 -0.02159361170708962 DVHGPDWHL 9 Unmodified _DVHGPDWHL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1706848144531 3 359.170041 1074.48829 0.33567 0.00012056 0.8179 0.00029377 1.1536 0.00041433 359.1702873043244 47.374 0.23988 47.374 47.231 47.471 0 19 10 3 0 0 0 0.60285 1 25954 25954 1.1933 1.1933 1 1531500 6777 3826 4627 4729 7876 7876 -0.04597171393447752 DVHHRQVVSY 10 Unmodified _DVHHRQVVSY_ 0 0 0 REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2 REV__nc|ENSG00000165506|Q9NVR5-2|DNAAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3151245117188 2 620.315086 1238.61562 -0.052984 -3.2867E-05 -0.32739 -0.00020308 -0.38037 -0.00023595 620.3149528128279 23.317 0.28515 23.317 23.163 23.448 0 41 13 4 0 0 0 0.67033 1 11937 11937 6.2058 0.47393 1 7429100 + 6778 22015 4628 4730 7877 7877 0.00585549480751979 DVHLHNSESY 10 Unmodified _DVHLHNSESY_ 0 0 0 REV__ENSG00000181027|ENST00000318584|FKRP REV__ENSG00000181027|ENST00000318584|FKRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7688598632812 2 600.767634 1199.52072 -0.60482 -0.00036336 0.41162 0.00024729 -0.19321 -0.00011607 600.7681353393513 19.203 0.17218 19.203 19.11 19.282 0 16 10 2 0 0 0 0.56348 1 9573 9573 13.042 0.80181 1 948890 + 6779 23184 4629 4731 7878 7878 -0.07106428781071372 DVHNVAANFY 10 Unmodified _DVHNVAANFY_ 0 0 0 REV__ENSG00000163536|ENST00000446050|SERPINI1 REV__ENSG00000163536|ENST00000446050|SERPINI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2669067382812 2 575.269813 1148.52507 NaN NaN NaN NaN NaN NaN NaN 15.893 1 15.879 15.379 16.379 -0.014067 0 0 0 0.96981 1 7820 7820 3.9444 0.66309 1 + 6780 21782 4630 4732 7879 7879 -0.0432491956753438 DVHNVAANFY 10 Unmodified _DVHNVAANFY_ 0 0 0 REV__ENSG00000163536|ENST00000446050|SERPINI1 REV__ENSG00000163536|ENST00000446050|SERPINI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.26611328125 2 575.269813 1148.52507 NaN NaN NaN NaN NaN NaN NaN 16.362 1 16.363 15.863 16.863 0.0010548 0 0 0 0.96981 1 8064 8064 3.9444 0.66309 1 + 6781 21782 4630 4732 7880 7880 -0.0432491956753438 DVHNVAANFY 10 Unmodified _DVHNVAANFY_ 0 0 0 REV__ENSG00000163536|ENST00000446050|SERPINI1 REV__ENSG00000163536|ENST00000446050|SERPINI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2662963867188 2 575.269813 1148.52507 NaN NaN NaN NaN NaN NaN NaN 16.796 1 16.797 16.297 17.297 0.0010548 0 0 0 0.96981 1 8307 8307 3.9444 0.66309 1 + 6782 21782 4630 4732 7881 7881 -0.0432491956753438 DVHPTLLDNA 10 Unmodified _DVHPTLLDNA_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1856994628906 3 365.520739 1093.54039 -0.86709 -0.00031694 -1.0416 -0.00038074 -1.9087 -0.00069768 365.52028757176265 32.147 0.34083 32.147 31.92 32.261 0 32 16 3 0 0 0 0.23325 1 16784 16784 3.3196 0 1 1516800 6783 1160 4631 4733 7882 7882 -0.0026405277033063612 DVHQLVDRVF 10 Unmodified _DVHQLVDRVF_ 0 0 0 REV__nc|ENSG00000074416|Q99685-2|MGLL REV__nc|ENSG00000074416|Q99685-2|MGLL MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2214965820312 3 409.887533 1226.64077 1.0449 0.00042831 -0.24199 -9.9189E-05 0.80295 0.00032912 409.88768748521034 19.108 0.17663 16.475 16.37 16.546 -2.6333 21 11 2 0 0 0 0.66569 1 10123 10123 6.1918 0.78914 1 2035600 + 6784 17553 4632 4734 7883 7883 0.0365160428332274 DVICGTVSVY 10 Unmodified _DVICGTVSVY_ 0 0 0 REV__nc|ENSG00000185942|Q8N8D7|NKAIN3 REV__nc|ENSG00000185942|Q8N8D7|NKAIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.25634765625 2 528.257525 1054.5005 NaN NaN NaN NaN NaN NaN NaN 33.686 1 33.686 33.186 34.186 0 0 0 0 0.7417 1 17689 17689 14.838 0.93222 1 + 6785 23536 4633 4735 7884 7884 -0.024573157652412192 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(89)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8155517578125 2 583.815541 1165.61653 0.12688 7.4075E-05 1.3474 0.00078663 1.4743 0.0008607 583.815524454166 68.951 0.60181 68.47 68.161 68.763 -0.48071 81 26 4 0 0 0 0.0086209 2 37671 37671;37773 89.401 41.055 1 29693000 6786 3655 4634 4736 7885;7886 7885 641 0.040346278054357754 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(80)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8153686523438 2 583.815541 1165.61653 -0.0064413 -3.7606E-06 -0.24106 -0.00014073 -0.2475 -0.00014449 583.8155010236376 70.184 0.36045 69.705 69.553 69.914 -0.47903 63 19 4 0 0 0 0.010301 1 38381 38381 79.596 39.639 1 35820000 6787 3655 4634 4736 7887 7887 641 0.040346278054357754 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(89)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8168334960938 2 583.815541 1165.61653 0.94038 0.00054901 -0.31402 -0.00018333 0.62636 0.00036568 583.8153817909898 68.477 0.52494 68.502 68.223 68.748 0.025146 90 25 5 0 0 0 0.0086209 2 37561 37561;37658 89.401 41.055 1 78609000 6788 3655 4634 4736 7888;7889 7888 641 0.040346278054357754 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(80)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8159790039062 2 583.815541 1165.61653 0.73926 0.00043159 -1.0771 -0.00062886 -0.33788 -0.00019726 583.8150933644206 69.606 0.52056 69.637 69.476 69.997 0.030914 76 26 5 0 0 0 0.010301 2 38218 38218;38321 79.596 39.639 1 134940000 6789 3655 4634 4736 7890;7891 7890 641 0.040346278054357754 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(62)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.815673828125 2 583.815541 1165.61653 0.20513 0.00011976 0.42634 0.00024891 0.63147 0.00036866 583.8157827044031 77.156 0.50334 70.98 70.562 71.065 -6.1757 35 27 2 0 0 0 0.021948 1 50453 50453 61.602 30.965 1 14697000 6790 3655 4634 4736 7892 7892 641 0.040346278054357754 DVIRLIMQY 9 Oxidation (M) _DVIRLIM(Oxidation (M))QY_ DVIRLIM(1)QY DVIRLIM(70)QY 0 0 1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8164672851562 2 583.815541 1165.61653 1.2333 0.00072 -0.45832 -0.00026758 0.77494 0.00045242 583.8152148327973 79.386 1.1745 73.21 72.468 73.642 -6.1757 172 68 3 0 0 0 0.013609 3 51835 51835;51958;52095 70.332 38.027 1 50701000 6791 3655 4634 4736 7893;7894;7895 7893 641 0.040346278054357754 DVIRLIMQY 9 Unmodified _DVIRLIMQY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8186645507812 2 575.818084 1149.62162 -0.0062669 -3.6086E-06 -0.0586 -3.3743E-05 -0.064867 -3.7352E-05 575.8181260465847 84.36 0.42071 84.423 84.28 84.701 0.063171 30 18 2 0 0 0 0.0083595 2 46788 46664;46788 118.07 60.597 1 41423000 6792 3655 4634 4737 7896;7897 7897 0.05278931668067344 DVIRLIMQY 9 Unmodified _DVIRLIMQY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8190307617188 2 575.818084 1149.62162 1.056 0.00060805 -0.10323 -5.944E-05 0.95275 0.00054861 575.8180248590751 98.493 0.32773 92.317 92.087 92.414 -6.1757 69 22 5 0 0 0 0.0083595 1 65303 65303 118.07 60.597 1 1142500000 6793 3655 4634 4737 7898 7898 0.05278931668067344 DVKHFSPED 9 Unmodified _DVKHFSPED_ 0 0 0 ENSG00000160202|ENST00000291554|CRYAA ENSG00000160202|ENST00000291554|CRYAA ENSG00000160202|ENST00000291554|CRYAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.24853515625 2 537.248546 1072.48254 0.24365 0.0001309 -0.38149 -0.00020496 -0.13784 -7.4056E-05 537.2480699837433 26.716 0.41133 26.745 26.59 27.002 0.028664 34 17 3 0 0 0 0.36964 1 13848 13848 13.906 3.0821 1 17734000 6794 6698 4635 4738 7899 7899 -0.050803146957377976 DVKPNYLKGL 10 Unmodified _DVKPNYLKGL_ 0 0 0 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8879699707031 3 382.888763 1145.64446 1.1541 0.0004419 -2.2154 -0.00084827 -1.0613 -0.00040636 382.888029668949 18.498 0.20689 15.877 15.755 15.962 -2.6215 47 23 3 0 0 0 0.69126 1 9697 9697 3.8763 0.030424 1 2463900 6795 6374 4636 4739 7900 7900 0.07746274057171831 DVKRSRTY 8 Unmodified _DVKRSRTY_ 0 0 0 REV__ENSG00000175538|ENST00000310128|KCNE3 REV__ENSG00000175538|ENST00000310128|KCNE3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7821044921875 2 512.780348 1023.54614 NaN NaN NaN NaN NaN NaN NaN 88.224 1 88.224 87.724 88.724 0 0 0 0 0.97444 1 48837 48837 2.8892 0.31174 1 + 6796 22879 4637 4740 7901 7901 0.035310905319988706 DVLDAQWLY 9 Unmodified _DVLDAQWLY_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7805786132812 2 561.776939 1121.53933 0.34535 0.00019401 2.5645 0.0014407 2.9099 0.0016347 561.7787084736216 86.846 0.29881 86.846 86.676 86.975 0 33 17 3 0 0 0 0.39863 1 48068 48068 12.532 3.9383 1 776330 6797 4270 4638 4741 7902 7902 -0.016582671392370685 DVLFVIYVL 9 Unmodified _DVLFVIYVL_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8225708007812 2 540.820618 1079.62668 0.66144 0.00035772 -0.064939 -3.512E-05 0.5965 0.0003226 541.3219351063929 102.04 0.10416 95.865 95.814 95.918 -6.1757 12 4 4 0 0 0 0.06187 1 68502 68502 42.095 1.646 1 9318900 + 6798 18566 4639 4742 7903 7903 0.09005558802346059 DVLFVTLRL 9 Unmodified _DVLFVTLRL_ 0 0 0 ENST00000511647.5_1_4:129784042-129784372:+|nuORF ENST00000511647.5_1_4:129784042-129784372:+|nuORF ENST00000511647.5_1_4:129784042-129784372:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2222290039062 3 359.221853 1074.64373 0.94018 0.00033773 -0.25431 -9.1353E-05 0.68587 0.00024638 359.2218367468564 24.348 0.34975 21.521 21.392 21.742 -2.8273 48 19 3 0 0 0 0.19361 1 13245 13245 23.79 2.1996 1 18044000 6799 14609 4640 4743 7904 7904 0.10939479408125408 DVLIESIAF 9 Unmodified _DVLIESIAF_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7760620117188 2 503.776408 1005.53826 0.48726 0.00024547 0.51281 0.00025834 1.0001 0.00050381 503.77651012572716 93.14 0.4115 93.14 92.959 93.371 0 46 26 2 0 0 0 0.30562 2 51473 51473;51580 16.942 9.0321 1 704660 6800 1361 4641 4744 7905;7906 7905 0.03571518491855841 DVLIESIAF 9 Unmodified _DVLIESIAF_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7772521972656 2 503.776408 1005.53826 -0.042268 -2.1294E-05 1.9836 0.00099927 1.9413 0.00097797 503.7773723785855 93.69 0.53107 93.233 92.98 93.511 -0.4574 39 23 2 0 0 0 0.30562 2 51163 51163;51254 16.942 8.349 1 740230 6801 1361 4641 4744 7907;7908 7907 0.03571518491855841 DVLIESIAF 9 Unmodified _DVLIESIAF_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7760009765625 2 503.776408 1005.53826 1.3533 0.00068176 1.3882 0.00069934 2.7415 0.0013811 503.77675191071313 100.15 0.22548 93.971 93.819 94.044 -6.1757 23 13 2 0 0 0 0.095405 1 66878 66878 34.102 0 1 29802000 6802 1361 4641 4744 7909 7909 0.03571518491855841 DVLLETKRLAK 11 Unmodified _DVLLETKRLAK_ 0 0 0 REV__ENSG00000027001|ENST00000382172|MIPEP REV__ENSG00000027001|ENST00000382172|MIPEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3961791992188 2 643.395544 1284.77654 1.4163 0.00091125 -1.6501 -0.0010617 -0.23383 -0.00015044 643.3942417161678 105.05 0.1375 98.877 98.803 98.941 -6.1757 32 15 3 0 0 0 0.71618 1 70325 70325 2.7352 1.4057 1 118620000 + 6803 17131 4642 4745 7910 7910 0.14553879074128417 DVLPRDIYCR 10 Unmodified _DVLPRDIYCR_ 0 0 0 ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A ENSG00000186854|ENST00000409520|TRABD2A ENSG00000186854|ENST00000409520|TRABD2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2164611816406 3 417.216774 1248.62849 0.53218 0.00022203 -1.4145 -0.00059014 -0.88228 -0.0003681 417.55035874130226 24.301 0.27984 21.473 21.374 21.653 -2.8273 17 15 2 0 0 0 0.67459 1 13207 13207 3.0723 0.81953 1 4203400 6804 9512 4643 4746 7911 7911 0.014122445486009383 DVLRVHVT 8 Unmodified _DVLRVHVT_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7742919921875 2 469.774534 937.534515 -0.18114 -8.5096E-05 0.49222 0.00023123 0.31108 0.00014614 469.7748719165717 37.282 0.30911 37.01 36.872 37.181 -0.27133 24 12 2 0 0 0 0.6895 1 19572 19572 18.135 0 1 3892300 + 6805 17022 4644 4747 7912 7912 0.06324893508667628 DVMERADPLFL 11 Unmodified _DVMERADPLFL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MSMS AL20221201_MKP_PDAC_01 4 436.2225036621094 3 435.888434 1304.64347 NaN NaN NaN NaN NaN NaN NaN 40.021 1 35.492 34.992 35.992 -4.5294 0 0 0 0.93224 1 23840 23840 2.6312 0 1 6806 10045 4645 4748 7913 7913 0.003336916259740974 DVMETPAF 8 Unmodified _DVMETPAF_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2041931152344 2 455.204761 908.394969 NaN NaN NaN NaN NaN NaN NaN 68.552 1 68.552 68.052 69.052 0 0 0 0 0.97444 1 38210 38210 2.5775 0 1 6807 7937 4646 4749 7914 7914 -0.06289231890889369 DVMNWIIQFH 10 Unmodified _DVMNWIIQFH_ 0 0 0 REV__ENSG00000102452|ENST00000251127|NALCN REV__ENSG00000102452|ENST00000251127|NALCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8818969726562 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 16.474 1 16.474 15.974 16.974 0 0 0 0 0.99091 1 8036 8036 0.69767 0 1 + 6808 18238 4647 4750 7915 7915 -0.016068539630396117 DVNFPIDNLC 10 Unmodified _DVNFPIDNLC_ 0 0 0 nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.26611328125 2 575.265881 1148.51721 NaN NaN NaN NaN NaN NaN NaN 15.261 1 15.247 14.747 15.747 -0.014067 0 0 0 0.97592 1 7482 7482 3.2813 0 1 6809 6989 4648 4751 7916 7916 -0.051108148792991415 DVNFPIDNLC 10 Unmodified _DVNFPIDNLC_ 0 0 0 nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2676391601562 2 575.265881 1148.51721 NaN NaN NaN NaN NaN NaN NaN 15.687 1 15.673 15.173 16.173 -0.014067 0 0 0 0.97592 1 7712 7712 3.2813 0 1 6810 6989 4648 4751 7917 7917 -0.051108148792991415 DVNQSEEQSL 10 Unmodified _DVNQSEEQSL_ 0 0 0 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7584228515625 2 574.756932 1147.49931 NaN NaN NaN NaN NaN NaN NaN 17.032 1 17.034 16.534 17.534 0.0010548 0 0 0 0.97592 1 8439 8439 3.2813 0 1 + 6811 21129 4649 4752 7918 7918 -0.0685385860047063 DVNTLTRF 8 Unmodified _DVNTLTRF_ 0 0 0 ENSG00000165140|ENST00000375326|FBP1 ENSG00000165140|ENST00000375326|FBP1 ENSG00000165140|ENST00000375326|FBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2557373046875 2 483.256174 964.497795 -0.33547 -0.00016212 0.39749 0.00019209 0.062027 2.9975E-05 483.25622217456174 31.916 0.48394 31.916 31.6 32.084 0 52 23 3 0 0 0 0.76266 1 16560 16560 11.64 2.2929 1 8720000 6812 7299 4650 4753 7919 7919 0.01412596892100737 DVNTSEITFQ 10 Unmodified _DVNTSEITFQ_ 0 0 0 nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001-13|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2709350585938 2 577.272218 1152.52988 NaN NaN NaN NaN NaN NaN NaN 43.829 1 43.813 43.313 44.313 -0.015667 0 0 0 0.80141 1 23497 23497 12.241 0.60036 1 6813 14741 4651 4754 7920 7920 -0.04028080215448426 DVPAILDAL 9 Unmodified _DVPAILDAL_ 0 0 0 nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENSG00000163075|ENST00000413369|CFAP221 nc|ENSG00000163075|Q4G0U5-2|CFAP221 nc|ENSG00000163075|Q4G0U5-2|CFAP221 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7622375488281 2 463.7633 925.512048 NaN NaN NaN NaN NaN NaN NaN 77.635 1 77.635 77.135 78.135 0 0 0 0 0.6306 1 43160 43160 11.64 0 1 6814 6948 4652 4755 7921 7921 0.04631249320357256 DVPDSSPML 9 Unmodified _DVPDSSPML_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7216796875 2 480.720775 959.426998 -0.32058 -0.00015411 1.714 0.00082394 1.3934 0.00066983 480.72135750203506 33.246 0.25634 33.246 33.13 33.386 0 23 12 2 0 0 0 0.49272 1 17450 17450 7.9102 1.187 1 2092200 6815 10510 4653 4756 7922 7922 -0.054338642077368604 DVPILDVTR 9 Unmodified _DVPILDVTR_ 0 0 0 REV__nc|ENSG00000131951|Q6ZRR7|LRRC9 REV__nc|ENSG00000131951|Q6ZRR7|LRRC9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7960205078125 2 514.292756 1026.57096 0.22527 0.00011585 2.3063 0.0011861 2.5316 0.001302 514.2947874183338 92.363 0.28516 92.363 92.233 92.518 0 30 22 2 0 0 0 0.21564 1 51030 51030 3.9444 0.3479 1 847650 + 6816 19821 4654 4757 7923 7923 0.05873725614696923 DVPLKRRGC 9 Unmodified _DVPLKRRGC_ 0 0 0 REV__ENSG00000105707|ENST00000672452|HPN REV__ENSG00000105707|ENST00000672452|HPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2930297851562 2 522.292568 1042.57058 0.23206 0.0001212 -0.10728 -5.603E-05 0.12478 6.5171E-05 522.2929207509228 100.75 0.098183 100.61 100.56 100.66 -0.13293 6 3 2 0 0 0 0.59218 1 55011 55011 1.8442 0 1 1069600 + 6817 18451 4655 4758 7924 7924 0.05100027413868702 DVPPPAPDLY 10 Unmodified _DVPPPAPDLY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MSMS AL20221201_MKP_PDAC_01 4 361.8520202636719 3 361.850085 1082.52843 NaN NaN NaN NaN NaN NaN NaN 99.92 1 93.744 93.244 94.244 -6.1757 0 0 0 0.8671 1 66694 66694 5.4027 0.35519 1 6818 728 4656 4759 7925 7925 -0.009536695135238915 DVPTEEDRQ 9 Unmodified _DVPTEEDRQ_ 0 0 0 REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF REV__ENST00000226094.9_1_17:66537075-66550928:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7461547851562 2 544.746367 1087.47818 0.12428 6.7703E-05 -0.72677 -0.0003959 -0.60248 -0.0003282 544.7459787105036 65.297 0.55212 65.297 65.072 65.624 0 96 21 8 0 0 0 0.55775 1 36500 36500 3.9444 3.9444 1 12105000 + 6819 18638 4657 4760 7926 7926 -0.06205823909317587 DVQITQFGLNQ 11 Unmodified _DVQITQFGLNQ_ 0 0 0 REV__ENSG00000158428|ENST00000289388|CATIP REV__ENSG00000158428|ENST00000289388|CATIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.8211669921875 2 631.822409 1261.63027 0.39715 0.00025093 -0.59324 -0.00037482 -0.19609 -0.00012389 631.8218399487204 39.02 0.25092 39.02 38.903 39.154 0 41 11 4 0 0 0 0.66968 1 20869 20869 7.1017 0.89594 1 4996400 + 6820 21430 4658 4761 7927 7927 0.00991576838259789 DVQLIEYF 8 Unmodified _DVQLIEYF_ 0 0 0 REV__nc|ENSG00000139364|Q14DG7|TMEM132B REV__nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.26416015625 2 513.760758 1025.50696 0.29132 0.00014967 1.997 0.001026 2.2883 0.0011757 514.2640119978681 38.118 0.1405 38.118 38.007 38.148 0 10 6 2 0 0 0 0.79669 1 20327 20327 8.5933 0.68312 1 1938700 + 6821 20407 4659 4762 7928 7928 -0.00477054542238875 DVQLIEYF 8 Unmodified _DVQLIEYF_ 0 0 0 REV__nc|ENSG00000139364|Q14DG7|TMEM132B REV__nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.760758 1025.50696 0.29132 0.00014967 1.997 0.001026 2.2883 0.0011757 514.2640119978681 38.118 0.1405 38.118 38.007 38.148 0 0 0 NaN 8.5933 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1938700 + 6822 20407 4659 4762 -0.00477054542238875 DVQQNLTR 8 Unmodified _DVQQNLTR_ 0 0 0 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 REV__nc|ENSG00000160401|Q5JU67-2|CFAP157 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.25634765625 2 487.256705 972.498858 -0.42706 -0.00020809 -1.6522 -0.00080504 -2.0792 -0.0010131 487.2561180633422 16.929 0.18285 16.929 16.775 16.958 0 60 47 2 0 0 0 8.7369 1 8249 8249 3.9444 0 1 1013700 + 6823 21542 4660 4763 7929 7929 0.011508112609817545 DVREEGKENAF 11 Unmodified _DVREEGKENAF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.874267578125 3 431.873841 1292.59969 -0.24029 -0.00010378 0.63323 0.00027348 0.39294 0.0001697 431.8741736268062 22.684 0.32912 22.684 22.486 22.816 0 40 15 3 0 0 0 0.064626 2 11480 11480;11577 47.724 38.973 1 20925000 6824 2632 4661 4764 7930;7931 7930 -0.0349020154678783 DVREEGKENAF 11 Unmodified _DVREEGKENAF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.3076782226562 2 647.307123 1292.59969 -0.43977 -0.00028467 0.97738 0.00063267 0.53761 0.000348 647.3078715515986 22.674 0.28863 22.674 22.486 22.775 0 30 13 3 0 0 0 0.25276 1 11493 11493 18.373 12.641 1 2886800 6825 2632 4661 4764 7932 7932 -0.0349020154678783 DVREEGKENAF 11 Unmodified _DVREEGKENAF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8740234375 3 431.873841 1292.59969 -0.04251 -1.8359E-05 0.38261 0.00016524 0.3401 0.00014688 431.87409176823195 25.54 0.39514 22.657 22.444 22.84 -2.8831 58 21 3 0 0 0 0.019688 2 14042 13933;14042 57.477 45.249 1 47670000 6826 2632 4661 4764 7933;7934 7934 -0.0349020154678783 DVREEGKENAF 11 Unmodified _DVREEGKENAF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.80908203125 2 647.307123 1292.59969 -0.24347 -0.0001576 0.66924 0.00043321 0.42577 0.0002756 647.3077692492914 25.567 0.32356 22.684 22.498 22.822 -2.8831 39 17 3 0 0 0 0.00080161 2 13952 13952;14068 109.15 80.652 1 8026000 6827 2632 4661 4764 7935;7936 7935 -0.0349020154678783 DVRQLFELF 9 Unmodified _DVRQLFELF_ 0 0 0 REV__SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant REV__SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.81640625 2 583.813856 1165.61316 0.72974 0.00042603 1.2705 0.00074172 2.0002 0.0011678 583.8155029641937 77.967 1.0607 71.791 71.065 72.126 -6.1757 130 60 4 0 0 0 0.41742 1 50896 50896 11.64 0.81637 1 40865000 + 6828 20280 4662 4765 7937 7937 0.036977010230884844 DVRSAQAIHKF 11 Unmodified _DVRSAQAIHKF_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.9010009765625 3 424.566683 1270.67822 0.93421 0.00039663 -0.93451 -0.00039676 -0.00029618 -1.2575E-07 424.56703463174557 43.051 0.20304 38.286 38.161 38.364 -4.7648 16 12 2 0 0 0 0.58219 1 26060 26060 6.6235 0.75532 1 5374600 6829 5664 4663 4766 7938 7938 0.05370695548913318 DVRWRRLF 8 Unmodified _DVRWRRLF_ 0 0 0 ENSG00000070388|ENST00000215530|FGF22;ENST00000591390.1_1_19:639949-640279:+|nuORF ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2221984863281 3 383.220958 1146.64105 NaN NaN NaN NaN NaN NaN NaN 19.903 1 19.911 19.411 20.411 0.0078487 0 0 0 0.97444 1 10137 10137 1.8442 0.77278 1 6830 1027 4664 4767 7939 7939 0.07359068793834922 DVSDDDHQ 8 Unmodified _DVSDDDHQ_ 0 0 0 REV__ENSG00000070159|ENST00000374541|PTPN3 REV__ENSG00000070159|ENST00000374541|PTPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.6755676269531 2 465.675411 929.336269 0.66295 0.00030872 -1.5794 -0.0007355 -0.91648 -0.00042678 465.67450353909703 50.584 0.2514 50.584 50.433 50.685 0 20 11 2 0 0 0 0.80676 1 27868 27868 2.5775 0 1 2919200 + 6831 17464 4665 4768 7940 7940 -0.13122616931661923 DVSGGMWPV 9 Unmodified _DVSGGMWPV_ 0 0 0 ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4 ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4 ENSG00000173064|ENST00000682272|HECTD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.437255859375 1 947.429129 946.421853 -0.26255 -0.00024875 0.3612 0.00034221 0.098647 9.3461E-05 947.4299429979095 68.8 0.32182 68.8 68.656 68.978 0 28 13 3 0 0 0 0.58865 1 38334 38334 2.0598 0.21551 1 1845200 6832 8283;16387 4666 4769 7941 7941 -0.053501232796861586 DVSHMLQV 8 Unmodified _DVSHMLQV_ 0 0 0 ENST00000498571.1_1_3:49459509-49459862:-|nuORF ENST00000498571.1_1_3:49459509-49459862:-|nuORF ENST00000498571.1_1_3:49459509-49459862:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4561767578125 1 928.455678 927.448402 0.99368 0.00092259 -2.9024 -0.0026948 -1.9088 -0.0017722 928.4529067600562 63.453 0.78197 57.277 57 57.782 -6.1757 51 44 2 0 0 0 0.50673 1 41092 41092 34.102 7.2188 1 10131000 6833 14425 4667 4770 7942 7942 -0.01822434388361671 DVSIPLFSK 9 Unmodified _DVSIPLFSK_ 0 0 0 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.8747863769531 2 503.2844 1004.55425 0.18048 9.0832E-05 1.4852 0.00074749 1.6657 0.00083833 503.28470775445743 52.247 0.18227 51.813 51.709 51.891 -0.43367 13 8 2 0 0 0 0.209 1 28257 28257 3.9444 2.1002 1 892820 6834 9030 4668 4771 7943 7943 0.052152247287722275 DVSLQLPSR 9 Unmodified _DVSLQLPSR_ 0 0 0 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MSMS AL20221201_MKP_PDAC_01 4 507.7824401855469 2 507.782556 1013.55056 NaN NaN NaN NaN NaN NaN NaN 59.913 1 53.798 53.298 54.298 -6.1147 0 0 0 0.29524 1 38520 38520 25.399 0 1 6835 3873 4669 4772 7944 7944 0.044325549548943854 DVSMGHSSFIS 11 Unmodified _DVSMGHSSFIS_ 0 0 0 nc|ENSG00000141568|Q01167-2|FOXK2;ENSG00000141568|ENST00000335255|FOXK2;ENST00000527313.6_1_17:80477872-80529633:+|nuORF;nc|ENSG00000141568|Q01167-3|FOXK2 nc|ENSG00000141568|Q01167-2|FOXK2 nc|ENSG00000141568|Q01167-2|FOXK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2950439453125 2 583.760963 1165.50737 0.77676 0.00045344 -1.7537 -0.0010237 -0.97695 -0.0005703 583.758124422914 42.564 0.11947 42.564 42.524 42.644 0 7 5 2 0 0 0 0.28226 1 23076 23076 12.241 0 1 948410 6836 5354 4670 4773 7945 7945 -0.068760028846782 DVSPLYNFSLF 11 Unmodified _DVSPLYNFSLF_ 0 0 0 nc|ENSG00000183560|A6ND01-2|IZUMO1R;ENSG00000183560|ENST00000687084|IZUMO1R nc|ENSG00000183560|A6ND01-2|IZUMO1R nc|ENSG00000183560|A6ND01-2|IZUMO1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.3237915039062 2 651.324254 1300.63395 2.5219 0.0016426 -0.30554 -0.00019901 2.2163 0.0014435 651.3238392972365 95.96 0.35137 95.964 95.764 96.115 0.0041504 41 12 4 0 0 0 0.67037 1 53364 53364 13.042 7.7456 1 16949000 6837 9159 4671 4774 7946 7946 -0.0043375338791520335 DVSRKCWMF 9 Unmodified _DVSRKCWMF_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2716674804688 2 586.272986 1170.53142 NaN NaN NaN NaN NaN NaN NaN 93.798 1 93.378 92.878 93.878 -0.42044 0 0 0 0.84737 1 51251 51251 1.8442 1.0506 1 6838 6950 4672 4775 7947 7947 -0.04702440932010177 DVTDEEMYY 9 Unmodified _DVTDEEMYY_ 0 0 0 PNISR|p.I354M|1|0.16|ENSG00000132424|chr6:99404643-99404643|A/C|missense_variant PNISR|p.I354M|1|0.16|ENSG00000132424|chr6:99404643-99404643|A/C|missense_variant PNISR|p.I354M|1|0.16|ENSG00000132424|chr6:99404643-99404643|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7249755859375 2 582.723712 1163.43287 0.26981 0.00015722 1.7206 0.0010026 1.9904 0.0011599 582.7248232569762 69.146 0.72543 69.146 68.764 69.489 0 49 31 2 0 0 0 0.54444 1 38438 38438 4.756 2.6963 1 1090100 6839 16688 4673 4776 7948 7948 -0.14230810486719747 DVTETALALY 10 Unmodified _DVTETALALY_ 0 0 0 REV__nc|ENSG00000130939|O95155-3|UBE4B REV__nc|ENSG00000130939|O95155-3|UBE4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2843017578125 2 548.282054 1094.54956 0.39678 0.00021755 0.81712 0.00044801 1.2139 0.00066556 548.2826151362896 88.738 0.37079 88.234 88.024 88.394 -0.50423 42 15 4 0 0 0 0.62068 1 48485 48485 10.074 0.72649 1 1451800 + 6840 19753 4674 4777 7949 7949 0.006062957953190562 DVTLGAKL 8 Unmodified _DVTLGAKL_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA REV__ENSG00000241973|ENST00000255882|PI4KA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7444152832031 2 408.744911 815.475269 NaN NaN NaN NaN NaN NaN NaN 40.446 1 40.446 39.946 40.946 0 0 0 0 0.57076 1 21737 21737 36.044 0 1 + 6841 24456 4675 4778 7950 7950 0.060149974944692985 DVTMKWLY 8 Unmodified _DVTMKWLY_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.578857421875 2 528.265153 1054.51575 -0.15069 -7.9605E-05 2.5199 0.0013312 2.3692 0.0012516 528.766995146588 69.865 0.10972 69.386 69.314 69.424 -0.47903 6 4 2 0 0 0 8.7369 1 38204 38204 9.3474 1.4373 1 863900 + 6842 28032 4676 4779 7951 7951 -0.009324041774107172 DVTNSFVQARL 11 Unmodified _DVTNSFVQARL_ 0 0 0 REV__ENST00000458108.1_1_3:32300804-32301218:+|nuORF REV__ENST00000458108.1_1_3:32300804-32301218:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8740234375 3 417.222693 1248.64625 -0.41465 -0.000173 0.9387 0.00039165 0.52405 0.00021865 417.22282952908506 22.637 0.18541 22.637 22.528 22.714 0 12 8 2 0 0 0 0.73451 1 11496 11496 1.0136 0.6843 1 600610 + 6843 27274 4677 4780 7952 7952 0.031872830751581205 DVTQVSSAY 9 Unmodified _DVTQVSSAY_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2295837402344 2 485.229822 968.445091 -0.44806 -0.00021741 -2.4237 -0.001176 -2.8717 -0.0013934 485.2298987499674 34.368 0.32798 34.368 34.19 34.518 0 55 16 5 0 0 0 0.024882 1 18067 18067 58.679 16.839 1 6028800 6844 1415 4678 4781 7953 7953 -0.04039405961373177 DVTQVSSAY 9 Unmodified _DVTQVSSAY_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 969.45263671875 1 969.452367 968.445091 1.5001 0.0014542 -1.5077 -0.0014616 -0.007613 -7.3804E-06 969.4515145279532 41.734 0.22083 37.127 36.999 37.22 -4.6079 19 13 2 0 0 0 0.018301 1 25067 25067 65.235 29.108 1 3151200 6845 1415 4678 4781 7954 7954 -0.04039405961373177 DVTQVSSAY 9 Unmodified _DVTQVSSAY_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2308044433594 2 485.229822 968.445091 1.6772 0.00081381 -0.18021 -8.7445E-05 1.4969 0.00072636 485.2298204555709 41.729 0.32499 37.121 36.952 37.277 -4.6079 46 20 3 0 0 0 0.047196 1 25133 25133 46.021 24.274 1 12615000 6846 1415 4678 4781 7955 7955 -0.04039405961373177 DVTSILLTY 9 Unmodified _DVTSILLTY_ 0 0 0 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 MSMS AL20221201_MKP_PDAC_01 4 512.7826538085938 2 512.78169 1023.54883 NaN NaN NaN NaN NaN NaN NaN 97.784 1 91.608 91.108 92.108 -6.1757 0 0 0 0.23581 1 64810 64810 28.487 11.545 1 6847 10139 4679 4782 7956 7956 0.03799501146284001 DVTWRYSCKH 10 Unmodified _DVTWRYSCKH_ 0 0 0 nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;ENST00000496726.5_1_3:25760953-25775482:-|nuORF nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.3023071289062 2 647.803497 1293.59244 0.17451 0.00011305 -2.2559 -0.0014614 -2.0813 -0.0013483 647.8018554731816 58.928 0.22735 58.437 58.329 58.556 -0.49079 22 10 3 0 0 0 0.65282 1 32041 32041 8.1555 2.8586 1 1475700 6848 6089 4680 4783 7957 7957 -0.04261212628239264 DVTYTSHLEWE 11 Unmodified _DVTYTSHLEWE_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.3084716796875 2 690.309332 1378.60411 NaN NaN NaN NaN NaN NaN NaN 61.584 1 61.584 61.084 62.084 0 0 0 0 0.93613 1 34335 34335 5.2969 0.39987 1 + 6849 18201 4681 4784 7958 7958 -0.07004737123907034 DVVRLPHS 8 Unmodified _DVVRLPHS_ 0 0 0 REV__ENST00000492873.1_1_X:48462612-48463417:+|nuORF REV__ENST00000492873.1_1_X:48462612-48463417:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7592163085938 2 461.758884 921.503215 0.15655 7.229E-05 1.0156 0.00046896 1.1721 0.00054125 461.7592963119218 23.396 0.33429 20.618 20.44 20.774 -2.7784 48 23 3 0 0 0 0.63229 1 12604 12604 23.148 0.41214 1 9378200 + 6850 27912 4682 4785 7959 7959 0.0393232047457559 DVWCWKMDL 9 Unmodified _DVWCWKMDL_ 0 0 0 REV__ENSG00000198825|ENST00000650623|INPP5F REV__ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2667846679688 2 598.26737 1194.52019 -0.12276 -7.3441E-05 -1.7477 -0.0010456 -1.8705 -0.001119 598.2662522962796 71.97 0.42552 71.97 71.734 72.16 0 51 19 4 0 0 0 0.32871 1 40143 40143 15.847 0.5987 1 5284400 + 6851 24069 4683 4786 7960 7960 -0.06929263026154331 DVWSMGILLYV 11 Unmodified _DVWSMGILLYV_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-6|MELK nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.839599609375 2 648.338849 1294.66315 0.26601 0.00017246 -1.9261 -0.0012488 -1.6601 -0.0010763 648.8394670672758 73.1 0.20079 73.1 72.925 73.126 0 13 8 2 0 0 0 0.71618 1 40637 40637 2.7352 1.2533 1 272130 6852 7323 4684 4787 7961 7961 0.02760067636745589 DVWSMGILLYV 11 Unmodified _DVWSMGILLYV_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-6|MELK nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.8392944335938 2 648.338849 1294.66315 0.58484 0.00037917 -2.7781 -0.0018012 -2.1933 -0.001422 648.3366653657586 73.497 0.25236 73.021 72.913 73.166 -0.47588 17 10 2 0 0 0 0.6889 1 40222 40222 5.2969 1.7004 1 865780 6853 7323 4684 4787 7962 7962 0.02760067636745589 DVYDDGKHVY 10 Unmodified _DVYDDGKHVY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1842956542969 3 404.184016 1209.53022 -0.6122 -0.00024744 0.47172 0.00019066 -0.14049 -5.6783E-05 404.1844790915329 26.65 0.25257 26.65 26.508 26.761 0 23 11 3 0 0 0 0.48505 1 13691 13691 24.882 22.975 1 1639700 6854 3330 4685 4788 7963 7963 -0.06616660495569704 DVYIGNILY 9 Unmodified _DVYIGNILY_ 0 0 0 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.282958984375 2 535.281857 1068.54916 0.44643 0.00023897 -0.23063 -0.00012345 0.2158 0.00011551 535.2816130861904 66.446 0.26868 66.446 66.325 66.594 0 17 11 2 0 0 0 0.45045 1 37046 37046 10.074 0 1 1244300 + 6855 18741 4686 4789 7964 7964 0.017629208661446683 DVYIGNILY 9 Unmodified _DVYIGNILY_ 0 0 0 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.282470703125 2 535.281857 1068.54916 0.25824 0.00013823 0.30912 0.00016547 0.56736 0.00030369 535.2818718560486 66.961 0.21445 66.478 66.355 66.569 -0.48323 17 9 2 0 0 0 0.34999 1 36578 36578 14.838 0 1 1506100 + 6856 18741 4686 4789 7965 7965 0.017629208661446683 DVYIGNILY 9 Unmodified _DVYIGNILY_ 0 0 0 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.281857 1068.54916 0.44643 0.00023897 -0.23063 -0.00012345 0.2158 0.00011551 535.2816130861904 66.446 0.26868 66.446 66.325 66.594 0 -0.015853 -0.00035715 NaN 14.838 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1244300 + 6857 18741 4686 4789 0.017629208661446683 DVYIGNILY 9 Unmodified _DVYIGNILY_ 0 0 0 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 REV__nc|ENSG00000111261|Q9H8J5-2|MANSC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.281857 1068.54916 0.25824 0.00013823 0.30912 0.00016547 0.56736 0.00030369 535.2818718560486 66.961 0.21445 66.478 66.355 66.569 -0.48323 0.015853 0.00022069 NaN 14.838 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1506100 + 6858 18741 4686 4789 0.017629208661446683 DVYKGCKNSTL 11 Unmodified _DVYKGCKNSTL_ 0 0 0 REV__nc|ENSG00000143748|O15381-5|NVL REV__nc|ENSG00000143748|O15381-5|NVL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.3055419921875 2 614.305538 1226.59652 0.55909 0.00034345 -1.891 -0.0011616 -1.3319 -0.00081818 614.3042243602645 61.131 0.49387 61.088 60.745 61.239 -0.04351 69 24 4 0 0 0 0.557 1 33370 33370 17.113 4.0704 1 30097000 + 6859 20664 4687 4790 7966 7966 -0.007711679251769965 DVYNHFLLY 9 Unmodified _DVYNHFLLY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H;ENST00000577939.1_1_17:27008175-27009006:+|nuORF ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2929077148438 2 592.292756 1182.57096 0.70219 0.0004159 2.0187 0.0011957 2.7209 0.0016116 592.2950135893287 75.516 0.49963 75.039 74.98 75.479 -0.47714 36 23 3 0 0 0 0.20428 1 41387 41387 22.736 9.6938 1 934400 6860 2632 4688 4791 7967 7967 -0.013022743852843632 DVYRIEVEN 9 Unmodified _DVYRIEVEN_ 0 0 0 REV__ENSG00000121057|ENST00000337714|AKAP1 REV__ENSG00000121057|ENST00000337714|AKAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8846740722656 3 379.524261 1135.55095 1.1433 0.00043393 -1.0151 -0.00038527 0.12822 4.8661E-05 379.52377866030145 38.965 0.2999 34.515 34.316 34.616 -4.4509 33 18 2 0 0 0 0.21404 1 22941 22941 5.2969 1.7098 1 11704000 + 6861 19274 4689 4792 7968 7968 -0.011400701159118398 DWAKLIKRL 9 Unmodified _DWAKLIKRL_ 0 0 0 REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1 REV__nc|ENSG00000267080|Q495Z4|ASB16-AS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2234802246094 3 381.572998 1141.69716 0.44741 0.00017072 0.9723 0.000371 1.4197 0.00054172 381.574140263458 25.187 0.29677 22.304 22.201 22.498 -2.8831 53 25 3 0 0 0 0.49766 1 13731 13731 7.609 2.3121 1 12607000 + 6862 29094 4690 4793 7969 7969 0.13198276910679851 DWDRRMRKQ 9 Unmodified _DWDRRMRKQ_ 0 0 0 REV__nc|ENSG00000087087|Q9BXP5-5|SRRT REV__nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880004882812 3 430.88765 1289.64112 NaN NaN NaN NaN NaN NaN NaN 103.94 1 103.94 103.44 104.44 0 0 0 0 0.85798 1 57260 57260 0.23584 0.076522 1 + 6863 17776 4691 4794 7970 7970 0.007887007315275696 DWDWGWLP 8 Unmodified _DWDWGWLP_ 0 0 0 REV__ENSG00000130487|ENST00000648057|KLHDC7B REV__ENSG00000130487|ENST00000648057|KLHDC7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2877807617188 2 537.737617 1073.46068 0.34717 0.00018669 1.5377 0.00082687 1.8849 0.0010136 537.7379380252551 89.205 0.22626 88.701 88.614 88.841 -0.50423 11 9 2 0 0 0 8.7369 1 48767 48767 0.79363 0 1 242640 + 6864 19722 4692 4795 7971 7971 -0.07311074653671312 DWFEAKLVS 9 Unmodified _DWFEAKLVS_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2819213867188 2 547.779482 1093.54441 0.28487 0.00015605 2.6121 0.0014309 2.897 0.0015869 547.7801487793694 95.698 0.15511 95.329 95.2 95.355 -0.36815 11 9 2 0 0 0 0.21834 1 52221 52221 1.8442 1.1539 1 349100 6865 816 4693 4796 7972 7972 0.0013803672336507589 DWFSKKVF 8 Unmodified _DWFSKKVF_ 0 0 0 ENST00000460309.1_2_12:9840531-9840597:+|nuORF ENST00000460309.1_2_12:9840531-9840597:+|nuORF ENST00000460309.1_2_12:9840531-9840597:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5274963378906 3 352.855282 1055.54402 0.91085 0.0003214 3.0345 0.0010707 3.9453 0.0013921 352.85733334102184 49.754 0.27609 49.705 49.589 49.865 -0.048828 20 13 2 0 0 0 8.7369 1 26862 26862 7.2892 2.96 1 10589000 6866 13638 4694 4797 7973 7973 0.018466617941840013 DWFVWGHPG 9 Unmodified _DWFVWGHPG_ 0 0 0 REV__ENST00000578865.5_1_17:73623166-73623316:-|nuORF REV__ENST00000578865.5_1_17:73623166-73623316:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.503173828125 3 367.503131 1099.48756 0.50054 0.00018395 -1.4412 -0.00052965 -0.94068 -0.0003457 367.50244144333243 83.939 0.17501 83.44 83.288 83.463 -0.49961 10 6 2 0 0 0 0.61256 1 45919 45919 0.26902 0 1 390350 + 6867 29048 4695 4798 7974 7974 -0.05819966042486158 DWGQFKLKKL 10 Unmodified _DWGQFKLKKL_ 0 0 0 REV__ENSG00000106278|ENST00000393386|PTPRZ1 REV__ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.580322265625 3 421.580041 1261.71829 0.27888 0.00011757 0.64241 0.00027083 0.92129 0.0003884 421.5803454997172 73.92 0.29418 73.964 73.843 74.137 0.043983 44 13 4 0 0 0 0.25982 1 40719 40719 25.997 7.6577 1 7116000 + 6868 18496 4696 4799 7975 7975 0.09790242219514766 DWGRSCSI 8 Unmodified _DWGRSCSI_ 0 0 0 REV__ENST00000566339.5_1_16:1826884-1827097:-|nuORF REV__ENST00000566339.5_1_16:1826884-1827097:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2054138183594 2 462.205627 922.396701 0.59517 0.00027509 0.52347 0.00024195 1.1186 0.00051704 462.2056893784103 50.386 0.22047 50.386 50.236 50.456 0 17 9 2 0 0 0 0.80232 1 27757 27757 5.2307 0 1 2470100 + 6869 28920 4697 4800 7976 7976 -0.06760178082254242 DWPPQASS 8 Unmodified _DWPPQASS_ 0 0 0 nc|ENSG00000139890|Q8IYK8-2|REM2;ENSG00000139890|ENST00000267396|REM2 nc|ENSG00000139890|Q8IYK8-2|REM2 nc|ENSG00000139890|Q8IYK8-2|REM2 MSMS AL20221201_MKP_PDAC_01 4 444.2006530761719 2 444.198325 886.382096 NaN NaN NaN NaN NaN NaN NaN 59.091 1 53.016 52.516 53.516 -6.0745 0 0 0 0.88073 1 37906 37906 19.439 0 1 6870 16231 4698 4801 7977 7977 -0.06563926958756383 DWQKMMKF 8 Unmodified _DWQKMMKF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2655029296875 2 557.26463 1112.51471 0.43124 0.00024031 0.080909 4.5087E-05 0.51215 0.0002854 557.2650203707767 78.716 0.27632 78.716 78.553 78.829 0 30 12 3 0 0 0 0.80722 1 43688 43688 2.3027 0 1 1070200 6871 4746 4699 4802 7978 7978 -0.03704941817954932 DWQMPPPYV 9 Unmodified _DWQMPPPYV_ 0 0 0 nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211895|P01876|IGHA1 nc|ENSG00000211890|P01877|IGHA2 nc|ENSG00000211890|P01877|IGHA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1770629882812 3 378.175915 1131.50592 NaN NaN NaN NaN NaN NaN NaN 15.175 1 15.175 14.675 15.675 0 0 0 0 0.85737 1 7288 7288 0.26902 0 1 6872 16535 4700 4803 7979 7979 -0.05457592182801818 DWQWQVIELHL 11 Unmodified _DWQWQVIELHL_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.8772583007812 2 733.874976 1465.7354 2.0804 0.0015268 -0.8304 -0.00060941 1.25 0.00091737 733.8746712374939 93.993 0.54195 94.007 93.811 94.352 0.014252 52 20 3 0 0 0 0.69316 1 52219 52219 4.897 1.6157 1 5427800 + 6873 23079 4701 4804 7980 7980 0.02116118034655301 DWRERRAQAD 10 Unmodified _DWRERRAQAD_ 0 0 0 nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 MSMS AL20221201_MKP_PDAC_01 4 434.8821105957031 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 107.47 1 101.29 100.79 101.79 -6.1757 0 0 0 0.99248 1 71876 71876 0.62683 0.17231 1 6874 498 4702 4805 7981 7981 -0.01625137638666274 DWRERRAQAD 10 Unmodified _DWRERRAQAD_ 0 0 0 nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 MSMS AL20221201_MKP_PDAC_01 4 434.883544921875 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 108.89 1 102.71 102.21 103.21 -6.1757 0 0 0 0.99248 1 72750 72750 0.62683 0 1 6875 498 4702 4805 7982 7982 -0.01625137638666274 DWRERRAQAD 10 Unmodified _DWRERRAQAD_ 0 0 0 nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 nc|ENSG00000015592|Q9H169-4|STMN4 MSMS AL20221201_MKP_PDAC_01 4 434.8822631835938 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 109.8 1 103.62 103.12 104.12 -6.1757 0 0 0 0.99248 1 73308 73308 0.62683 0 1 6876 498 4702 4805 7983 7983 -0.01625137638666274 DWSLRYDTWE 10 Unmodified _DWSLRYDTWE_ 0 0 0 REV__ENSG00000170175|ENST00000306071|CHRNB1 REV__ENSG00000170175|ENST00000306071|CHRNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.5393371582031 3 457.53857 1369.59388 -0.34297 -0.00015692 0.92128 0.00042152 0.57831 0.0002646 457.53915157169826 37.184 0.34103 36.912 36.751 37.092 -0.27133 25 13 3 0 0 0 0.71042 1 19528 19528 1.7423 0 1 2337300 + 6877 22451 4703 4806 7984 7984 -0.07613300058483219 DWVFLNYTY 9 Unmodified _DWVFLNYTY_ 0 0 0 nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L;STK38L|p.K444T|1|0.19|ENSG00000211455|chr12:27322391-27322391|A/C|missense_variant;ENST00000536093.5_3_12:27468169-27475385:+|nuORF nc|ENSG00000211455|Q9Y2H1-2|STK38L nc|ENSG00000211455|Q9Y2H1-2|STK38L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7854614257812 2 610.784764 1219.55498 0.14621 8.9305E-05 0.093098 5.6863E-05 0.23931 0.00014617 610.7847517223263 89.236 0.27924 89.236 89.063 89.342 0 27 12 3 0 0 0 0.58865 1 49304 49304 2.0598 0 1 881710 6878 10408 4704 4807 7985 7985 -0.04601980622192059 DWVRHHYT 8 Unmodified _DWVRHHYT_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.266845703125 2 557.264865 1112.51518 NaN NaN NaN NaN NaN NaN NaN 86.567 1 86.567 86.067 87.067 0 0 0 0 0.97444 1 47948 47948 0.69038 0.088878 1 6879 2420 4705 4808 7986 7986 -0.03658062782255911 DWYVDENF 8 Unmodified _DWYVDENF_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2208251953125 2 544.221997 1086.42944 0.17839 9.7085E-05 -1.3118 -0.00071393 -1.1334 -0.00061685 544.2207788542721 92.894 0.36631 92.437 92.233 92.599 -0.4574 35 19 2 0 0 0 0.80676 1 50825 50825 2.5775 0.27475 1 1777600 6880 10364 4706 4809 7987 7987 -0.11031692478422883 DYAAIRDNYF 10 Unmodified _DYAAIRDNYF_ 0 0 0 ENSG00000006451|ENST00000005257|RALA;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB ENSG00000006451|ENST00000005257|RALA ENSG00000006451|ENST00000005257|RALA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2905883789062 2 624.288202 1246.56185 -0.10489 -6.548E-05 4.0244 0.0025124 3.9195 0.0024469 624.2906589713153 55.238 0.30072 55.238 55.005 55.305 0 30 12 3 0 0 0 0.035244 1 30668 30668 65.474 45.059 1 5339600 6881 335 4707 4810 7988 7988 -0.05156667741630372 DYAAIRDNYF 10 Unmodified _DYAAIRDNYF_ 0 0 0 ENSG00000006451|ENST00000005257|RALA;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB ENSG00000006451|ENST00000005257|RALA ENSG00000006451|ENST00000005257|RALA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.286865234375 2 624.288202 1246.56185 -0.22819 -0.00014246 -0.36767 -0.00022953 -0.59586 -0.00037199 624.2876924588764 55.881 0.30053 55.403 55.238 55.538 -0.47798 32 14 3 0 0 0 0.024351 1 30301 30301 71.708 44.079 1 4670400 6882 335 4707 4810 7989 7989 -0.05156667741630372 DYAAIRDNYF 10 Unmodified _DYAAIRDNYF_ 0 0 0 ENSG00000006451|ENST00000005257|RALA;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB ENSG00000006451|ENST00000005257|RALA ENSG00000006451|ENST00000005257|RALA MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2876586914062 2 624.288202 1246.56185 1.8054 0.0011271 -1.0694 -0.00066763 0.73599 0.00045947 624.2872224954991 62.643 0.58477 56.468 56.174 56.759 -6.1757 58 26 3 0 0 0 0.017375 1 40506 40506 78.06 54.04 1 20632000 6883 335 4707 4810 7990 7990 -0.05156667741630372 DYADNMSLNL 10 Unmodified _DYADNMSLNL_ 0 0 0 REV__nc|ENSG00000139318|Q16828-2|DUSP6 REV__nc|ENSG00000139318|Q16828-2|DUSP6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7897338867188 2 578.252971 1154.49139 0.74059 0.00042825 -0.46503 -0.00026891 0.27556 0.00015934 578.252754547409 53.947 0.32106 53.947 53.77 54.091 0 42 14 4 0 0 0 0.23412 1 29990 29990 9.3831 3.1773 1 9988600 + 6884 20400 4708 4811 7991 7991 -0.07967709121567168 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2748413085938 2 568.274564 1134.53457 0.32636 0.00018546 0.052086 2.9599E-05 0.37845 0.00021506 568.2744785148652 76.186 0.34914 76.186 76.021 76.37 0 39 14 4 0 0 0 0.018301 2 42407 42313;42407 65.235 39.836 1 7504200 6885 2096 4709 4812 7992;7993 7993 -0.0273115128200061 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2745971679688 2 568.274564 1134.53457 0.076205 4.3305E-05 0.39427 0.00022405 0.47047 0.00026736 568.2748242488785 76.711 0.41724 76.232 76.061 76.479 -0.47945 68 21 5 0 0 0 0.0090948 2 41942 41942;42046 85.272 49.53 1 22693000 6886 2096 4709 4812 7994;7995 7994 -0.0273115128200061 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2736206054688 2 568.274564 1134.53457 NaN NaN NaN NaN NaN NaN NaN 76.287 1 76.335 75.835 76.835 0.047943 0 0 0 0.074615 1 42092 42092 49.933 30.676 1 6887 2096 4709 4812 7996 7996 -0.0273115128200061 DYAELLQHF 9 Unmodified _DYAELLQHF_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14;ENST00000571759.1_1_16:70721833-70722010:-|nuORF;nc|ENSG00000103043|Q08AM6-2|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2745361328125 2 568.274564 1134.53457 0.23797 0.00013523 -1.1104 -0.00063104 -0.87248 -0.00049581 568.2737204947665 84.931 0.65806 78.756 78.463 79.121 -6.1757 90 39 3 0 0 0 0.018301 2 56034 56034;56157 65.235 41.214 1 30823000 6888 2096 4709 4812 7997;7998 7997 -0.0273115128200061 DYAEVSNTF 9 Unmodified _DYAEVSNTF_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2272338867188 2 523.227279 1044.44001 -0.069295 -3.6257E-05 -0.12125 -6.3443E-05 -0.19055 -9.97E-05 523.2273279607125 48.453 0.3861 48.453 48.272 48.658 0 60 18 4 0 0 0 0.06187 2 26546 26546;26663 42.095 19.264 1 34143000 6889 9456 4710 4813 7999;8000 7999 -0.08043709823982681 DYAIWNTKF 9 Unmodified _DYAIWNTKF_ 0 0 0 ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2877807617188 2 579.284931 1156.55531 0.12921 7.4849E-05 1.4043 0.00081347 1.5335 0.00088832 579.2860181544996 70.194 0.22834 69.715 69.615 69.844 -0.47903 25 11 3 0 0 0 0.13231 1 38378 38378 29.841 11.706 1 1985400 6890 8978 4711 4814 8001 8001 -0.01670560902334728 DYAIWNTKF 9 Unmodified _DYAIWNTKF_ 0 0 0 ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2860717773438 2 579.284931 1156.55531 0.69377 0.00040189 2.0237 0.0011723 2.7174 0.0015742 579.2861457547594 69.611 0.23061 69.642 69.554 69.784 0.030914 23 11 3 0 0 0 0.091924 1 38299 38299 34.932 24.108 1 3854600 6891 8978 4711 4814 8002 8002 -0.01670560902334728 DYAIWNTKF 9 Unmodified _DYAIWNTKF_ 0 0 0 ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.8112182617188 2 579.284931 1156.55531 0.42239 0.00024468 0.49406 0.0002862 0.91645 0.00053089 579.2853008694858 77.248 0.38762 71.072 70.938 71.325 -6.1757 35 22 2 0 0 0 0.098534 1 50564 50564 41.956 31.882 1 15367000 6892 8978 4711 4814 8003 8003 -0.01670560902334728 DYAKVLLLI 9 Unmodified _DYAKVLLLI_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.325927734375 2 524.326068 1046.63758 0.30417 0.00015949 0.87403 0.00045828 1.1782 0.00061776 524.3263945109898 93.609 0.26588 93.152 93.001 93.267 -0.45741 21 11 2 0 0 0 0.45045 1 51161 51161 10.074 2.7847 1 470440 6893 4010 4712 4815 8004 8004 0.11612961176638237 DYAKVLLLI 9 Unmodified _DYAKVLLLI_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3270263671875 2 524.326068 1046.63758 1.7046 0.00089379 -0.071204 -3.7334E-05 1.6334 0.00085645 524.3259454945165 93.024 0.45294 93.047 92.847 93.3 0.022987 45 17 3 0 0 0 0.025842 2 51687 51687;51782 57.722 21.595 1 6929300 6894 4010 4712 4815 8005;8006 8005 0.11612961176638237 DYAKVLLLI 9 Unmodified _DYAKVLLLI_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3267822265625 2 524.326068 1046.63758 1.4234 0.00074635 -0.58014 -0.00030418 0.8433 0.00044216 524.3257921304145 100.08 0.17379 93.909 93.804 93.978 -6.1757 25 10 3 0 0 0 0.10247 1 66834 66834 32.786 9.6373 1 67778000 6895 4010 4712 4815 8007 8007 0.11612961176638237 DYAQTIHQL 9 Unmodified _DYAQTIHQL_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.77099609375 2 544.772188 1087.52982 0.032383 1.7642E-05 0.52057 0.00028359 0.55295 0.00030123 544.7721508823669 44.116 0.18643 44.116 44.023 44.209 0 17 9 2 0 0 0 0.009483 1 23986 23986 81.89 41.94 1 21210000 6896 8374 4713 4816 8008 8008 -0.0104403542475211 DYAQTIHQL 9 Unmodified _DYAQTIHQL_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7737426757812 2 544.772188 1087.52982 0.9836 0.00053584 -0.14432 -7.8622E-05 0.83928 0.00045722 544.7726084858506 50.475 0.35999 44.936 44.725 45.085 -5.5391 32 22 2 0 0 0 0.0082661 1 31677 31677 92.491 61.855 1 27518000 6897 8374 4713 4816 8009 8009 -0.0104403542475211 DYARLVNEL 9 Unmodified _DYARLVNEL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.78955078125 2 546.787838 1091.56112 0.25547 0.00013969 0.11775 6.4386E-05 0.37322 0.00020407 546.7878646449336 58.76 0.24716 58.76 58.63 58.877 0 18 10 2 0 0 0 0.02676 1 32711 32711 61.602 12.048 1 4484000 6898 3967 4714 4817 8010 8010 0.01900537609321873 DYARLVNEL 9 Unmodified _DYARLVNEL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.787838 1091.56112 0.17379 9.5024E-05 3.5486 0.0019404 3.7224 0.0020354 546.7901063456684 59.432 0.1087 58.941 58.898 59.007 -0.49079 0.090379 0.0031208 NaN 61.602 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 514920 6899 3967 4714 4817 0.01900537609321873 DYATIFNNL 9 Unmodified _DYATIFNNL_ 0 0 0 nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF nc|ENSG00000114770|O15440-5|ABCC5 nc|ENSG00000114770|O15440-5|ABCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7616577148438 2 535.761289 1069.50803 0.27624 0.000148 0.26727 0.0001432 0.54352 0.00029119 535.7612594028985 83.915 0.27119 83.915 83.773 84.044 0 21 13 2 0 0 0 0.30562 1 46543 46543 16.942 11.182 1 843220 6900 3060 4715 4818 8011 8011 -0.023948401733377978 DYATIFNNL 9 Unmodified _DYATIFNNL_ 0 0 0 nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF nc|ENSG00000114770|O15440-5|ABCC5 nc|ENSG00000114770|O15440-5|ABCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.761962890625 2 535.761289 1069.50803 0.43642 0.00023382 -0.098299 -5.2665E-05 0.33812 0.00018115 535.7610052682337 84.488 0.33874 83.989 83.797 84.136 -0.49961 38 15 4 0 0 0 0.2143 1 46190 46190 21.747 13.836 1 2719800 6901 3060 4715 4818 8012 8012 -0.023948401733377978 DYAVVLNQL 9 Unmodified _DYAVVLNQL_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7789306640625 2 517.779482 1033.54441 0.55193 0.00028578 -0.52049 -0.0002695 0.031438 1.6278E-05 517.779243438057 74.439 0.33378 74.439 74.271 74.604 0 28 14 3 0 0 0 0.031062 1 41402 41402 54.774 26.287 1 1907400 6902 670 4716 4819 8013 8013 0.028980367233771176 DYAVVLNQL 9 Unmodified _DYAVVLNQL_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7801513671875 2 517.779482 1033.54441 0.65399 0.00033862 -0.29894 -0.00015479 0.35504 0.00018383 517.7793199442764 75.016 0.25488 74.539 74.375 74.63 -0.47714 18 10 2 0 0 0 0.16226 1 41024 41024 26.884 9.9414 1 1840400 6903 670 4716 4819 8014 8014 0.028980367233771176 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1921691894531 3 405.192734 1212.55637 0.097126 3.9355E-05 0.15555 6.3029E-05 0.25268 0.00010238 405.19276671551796 49.135 0.30795 49.135 48.969 49.277 0 49 14 5 0 0 0 0.018301 2 26962 26962;27073 51.415 29.825 1 32345000 6904 7685 4717 4820 8015;8016 8015 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.286376953125 2 607.285463 1212.55637 0.037918 2.3027E-05 0.692 0.00042024 0.72992 0.00044327 607.2855357690247 49.131 0.24959 49.131 48.986 49.236 0 27 11 3 0 0 0 0.015688 1 26973 26973 67.838 37.202 1 12545000 6905 7685 4717 4820 8017 8017 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1923828125 3 405.192734 1212.55637 0.7217 0.00029243 -0.42877 -0.00017373 0.29293 0.00011869 405.1925052984172 49.493 0.31596 49.101 48.922 49.238 -0.3923 51 15 4 0 0 0 0.039985 2 26561 26561;26676 45.74 24.15 1 64087000 6906 7685 4717 4820 8018;8019 8018 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.786865234375 2 607.285463 1212.55637 0.70227 0.00042648 -0.59015 -0.00035839 0.11212 6.809E-05 607.2849743416614 49.48 0.29493 49.087 48.964 49.258 -0.3923 46 14 4 0 0 0 0.0088231 2 26576 26576;26691 103.82 67.697 1 47390000 6907 7685 4717 4820 8020;8021 8020 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.28515625 2 607.285463 1212.55637 0.4351 0.00026423 0.76316 0.00046345 1.1983 0.00072769 607.2859976032354 49.125 0.17168 49.082 49.004 49.175 -0.04369 13 7 2 0 0 0 0.13231 1 26565 26565 29.841 16.798 1 1176300 6908 7685 4717 4820 8022 8022 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5693969726562 3 405.192734 1212.55637 0.15726 6.3721E-05 0.82319 0.00033355 0.98045 0.00039727 405.19305132857187 49.129 0.25114 49.085 48.964 49.215 -0.04369 26 11 3 0 0 0 0.21052 1 26584 26584 7.1017 3.5147 1 3016800 6909 7685 4717 4820 8023 8023 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.1925354003906 3 405.192734 1212.55637 0.98533 0.00039925 -0.063617 -2.5777E-05 0.92172 0.00037347 405.19259532221866 54.507 1.3201 48.641 48.339 49.659 -5.8653 164 82 4 0 0 0 0.018301 4 34742 34460;34601;34742;34899 59.368 42.803 1 169300000 6910 7685 4717 4820 8024;8025;8026;8027 8026 -0.041403465334497014 DYAYLREHF 9 Unmodified _DYAYLREHF_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2858276367188 2 607.285463 1212.55637 0.5433 0.00032994 0.60986 0.00037036 1.1532 0.0007003 607.2854328478688 54.525 0.65785 48.66 48.401 49.058 -5.8653 79 40 4 0 0 0 0.0061279 3 34500 34500;34639;34805 114.19 70.328 1 140810000 6911 7685 4717 4820 8028;8029;8030 8028 -0.041403465334497014 DYCEMSYLC 9 Unmodified _DYCEMSYLC_ 0 0 0 REV__ENSG00000130487|ENST00000648057|KLHDC7B REV__ENSG00000130487|ENST00000648057|KLHDC7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.29443359375 2 563.698128 1125.3817 0.31928 0.00017998 1.56 0.0008794 1.8793 0.0010594 563.6987211618098 63.203 0.19348 63.203 63.122 63.315 0 10 7 2 0 0 0 0.21367 1 35275 35275 4.756 1.8668 1 1137900 + 6912 19722 4718 4821 8031 8031 -0.17597174056777476 DYCSRMQLFFS 11 Unmodified _DYCSRMQLFFS_ 0 0 0 ENST00000540714.1_1_9:5919686-5933837:-|nuORF ENST00000540714.1_1_9:5919686-5933837:-|nuORF ENST00000540714.1_1_9:5919686-5933837:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2895812988281 3 466.205657 1395.59514 -0.16028 -7.4725E-05 -2.6873 -0.0012528 -2.8475 -0.0013275 466.20441100510294 51.472 0.098415 51.418 51.381 51.479 -0.053871 8 4 3 0 0 0 0.30542 1 27898 27898 1.3296 0 1 1457300 6913 15035 4719 4822 8032 8032 -0.08683125285574533 DYDFASPSL 9 Unmodified _DYDFASPSL_ 0 0 0 REV__ENSG00000163539|ENST00000682230|CLASP2 REV__ENSG00000163539|ENST00000682230|CLASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7247924804688 2 507.724372 1013.43419 0.48325 0.00024536 0.8438 0.00042842 1.3271 0.00067378 507.7247471968506 50.214 0.33733 50.214 50.032 50.369 0 32 15 3 0 0 0 0.14602 1 27635 27635 28.487 28.487 1 5148100 + 6914 21783 4720 4823 8033 8033 -0.07198808335658669 DYDKLIVRF 9 Unmodified _DYDKLIVRF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000554084.5_1_14:100819360-100828234:-|nuORF;ENST00000555063.5_1_14:100820782-100842614:-|nuORF;ENST00000553808.5_1_14:100820782-100835522:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2169189453125 3 390.21688 1167.62881 0.2581 0.00010071 0.41852 0.00016331 0.67662 0.00026403 390.21678978680086 61.744 0.2483 61.257 61.139 61.387 -0.48764 28 11 4 0 0 0 0.32871 1 33612 33612 10.8 6.2706 1 2014700 6915 5208 4721 4824 8034 8034 0.05169987540148213 DYDKLIVRF 9 Unmodified _DYDKLIVRF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000554084.5_1_14:100819360-100828234:-|nuORF;ENST00000555063.5_1_14:100820782-100842614:-|nuORF;ENST00000553808.5_1_14:100820782-100835522:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8215942382812 2 584.821681 1167.62881 0.13291 7.773E-05 -0.30659 -0.0001793 -0.17367 -0.00010157 584.8214946821041 61.744 0.2483 61.256 61.139 61.387 -0.48764 28 11 3 0 0 0 0.040683 1 33633 33633 49.554 31.408 1 5569900 6916 5208 4721 4824 8035 8035 0.05169987540148213 DYDPLVVKL 9 Unmodified _DYDPLVVKL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2978515625 2 531.297507 1060.58046 0.050642 2.6906E-05 0.50285 0.00026716 0.55349 0.00029407 531.2976761626905 71.558 0.57738 71.558 71.346 71.923 0 73 26 5 0 0 0 0.011671 3 39888 39772;39781;39888 75.761 45.536 1 20991000 6917 4336 4722 4825 8036;8037;8038 8038 0.05259493900234702 DYDPLVVKL 9 Unmodified _DYDPLVVKL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2986450195312 2 531.297507 1060.58046 0.49933 0.00026529 0.1704 9.0531E-05 0.66973 0.00035583 531.2976945431302 72 0.49459 71.524 71.319 71.813 -0.47609 44 20 4 0 0 0 0.020973 2 39356 39356;39459 62.573 44.438 1 11349000 6918 4336 4722 4825 8039;8040 8039 0.05259493900234702 DYDPLVVKL 9 Unmodified _DYDPLVVKL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2979736328125 2 531.297507 1060.58046 0.87823 0.0004666 0.98321 0.00052238 1.8614 0.00098898 531.2980257006777 71.448 0.25518 71.487 71.365 71.62 0.039024 18 11 2 0 0 0 0.14 1 39350 39350 29.082 16.55 1 1029500 6919 4336 4722 4825 8041 8041 0.05259493900234702 DYDPLVVKL 9 Unmodified _DYDPLVVKL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000484397.5_1_7:133682345-133692589:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2980346679688 2 531.297507 1060.58046 1.2678 0.00067358 -0.20685 -0.0001099 1.061 0.00056369 531.2977010711184 79.267 1.2619 73.091 72.5 73.762 -6.1757 130 61 3 0 0 0 0.0085164 2 51832 51832;51956 99.799 70.717 1 46706000 6920 4336 4722 4825 8042;8043 8042 0.05259493900234702 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1 ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1732177734375 3 378.173451 1131.49852 0.43275 0.00016366 0.26441 9.9992E-05 0.69716 0.00026365 378.1736389338546 50.941 0.3037 50.941 50.782 51.085 0 44 18 4 0 0 0 0.25297 2 28044 28044;28150 24.021 21.285 1 17271000 6921 3524 4723 4826 8044;8045 8044 -0.06196608458844821 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1 ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7576293945312 2 566.756538 1131.49852 NaN NaN NaN NaN NaN NaN NaN 50.975 1 50.975 50.475 51.475 0 0 0 0 0.026323 1 28127 28127 70.716 52.581 1 6922 3524 4723 4826 8046 8046 -0.06196608458844821 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1 ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.173583984375 3 378.173451 1131.49852 -0.21788 -8.2397E-05 0.15811 5.9792E-05 -0.059776 -2.2606E-05 378.17353896195584 51.436 0.28243 51.022 50.912 51.194 -0.41351 27 14 3 0 0 0 0.052168 1 27726 27726 32.786 25.177 1 15632000 6923 3524 4723 4826 8047 8047 -0.06196608458844821 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1 ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7550048828125 2 566.756538 1131.49852 -0.062013 -3.5146E-05 -0.63467 -0.0003597 -0.69668 -0.00039485 566.7560162343495 51.452 0.18711 51.038 50.969 51.156 -0.41351 16 9 2 0 0 0 0.016184 1 27748 27748 67.344 50.402 1 5961500 6924 3524 4723 4826 8048 8048 -0.06196608458844821 DYDSVFHHL 9 Unmodified _DYDSVFHHL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1 ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.1734313964844 3 378.173451 1131.49852 1.2079 0.0004568 0.26843 0.00010151 1.4763 0.00055831 378.1734388948962 56.988 0.35418 51.011 50.827 51.181 -5.9769 45 21 3 0 0 0 0.078417 1 36436 36436 27.629 22.732 1 31279000 6925 3524 4723 4826 8049 8049 -0.06196608458844821 DYEAGTLSFY 10 Unmodified _DYEAGTLSFY_ 0 0 0 ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39 ENSG00000204599|ENST00000396551|TRIM39 ENSG00000204599|ENST00000396551|TRIM39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1741027832031 3 389.173117 1164.49752 NaN NaN NaN NaN NaN NaN NaN 49.086 1 49.086 48.586 49.586 0 0 0 0 0.64375 1 26985 26985 12.175 0.68004 1 6926 10307 4724 4827 8050 8050 -0.07814867618412791 DYEDSQSH 8 Unmodified _DYEDSQSH_ 0 0 0 REV__ENSG00000134516|ENST00000520908|DOCK2 REV__ENSG00000134516|ENST00000520908|DOCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.6825256347656 2 490.683236 979.351919 0.42709 0.00020956 -1.3212 -0.00064831 -0.89415 -0.00043874 490.6825170550386 53.146 0.42738 53.146 52.9 53.327 0 53 19 4 0 0 0 0.80676 1 29417 29417 2.5775 0.27475 1 4197700 + 6927 19989 4725 4828 8051 8051 -0.13858330414598186 DYEFIYISF 9 Unmodified _DYEFIYISF_ 0 0 0 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 REV__ENSG00000150456|ENST00000382758|EEF1AKMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7769165039062 2 598.779148 1195.54374 NaN NaN NaN NaN NaN NaN NaN 65.64 1 65.156 64.656 65.656 -0.48428 0 0 0 0.46757 1 35832 35832 16.942 3.8998 1 + 6928 21024 4726 4829 8052 8052 -0.04620802716340222 DYENEQYGEYE 11 Unmodified _DYENEQYGEYE_ 0 0 0 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.180908203125 3 480.180888 1437.52083 NaN NaN NaN NaN NaN NaN NaN 14.055 1 14.062 13.562 14.562 0.0073986 0 0 0 0.9435 1 6953 6953 0 0 1 6929 4253 4727 4830 8053 8053 -0.18042518362381088 DYEYERFDVYF 11 Unmodified _DYEYERFDVYF_ 0 0 0 REV__nc|ENSG00000122025|P36888-2|FLT3 REV__nc|ENSG00000122025|P36888-2|FLT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 773.332763671875 2 773.330264 1544.64598 NaN NaN NaN NaN NaN NaN NaN 16.721 1 16.726 16.226 17.226 0.0050564 0 0 0 0.94307 1 8398 8398 0.30703 0.30703 1 + 6930 19324 4728 4831 8054 8054 -0.10456181435392864 DYFAFRNF 8 Unmodified _DYFAFRNF_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS AL20221201_MKP_PDAC_01 4 360.5037536621094 3 360.50302 1078.48723 NaN NaN NaN NaN NaN NaN NaN 29.768 1 26.467 25.967 26.967 -3.3016 0 0 0 0.97348 1 16763 16763 3.9444 0.3479 1 6931 1298 4729 4832 8055 8055 -0.0488738576234482 DYFDYCPEL 9 Unmodified _DYFDYCPEL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF;ENST00000578830.5_1_17:73221901-73228130:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8254089355469 3 388.823319 1163.44813 0.1976 7.683E-05 2.7317 0.0010621 2.9293 0.001139 388.8252811618057 67.882 0.2888 67.882 67.719 68.008 0 40 13 4 0 0 0 0.58865 1 37848 37848 1.0715 0.10919 1 2210900 6932 3852 4730 4833 8056 8056 -0.12705898898866508 DYFFKPVLF 9 Unmodified _DYFFKPVLF_ 0 0 0 ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3092651367188 2 588.310418 1174.60628 0.33632 0.00019786 0.69455 0.00040861 1.0309 0.00060648 588.812285582922 95.586 0.2656 95.218 95.089 95.355 -0.36815 26 14 2 0 0 0 0.39863 1 52179 52179 12.532 10.472 1 657260 6933 12306 4731 4834 8057 8057 0.025963881425013824 DYFFKPVLF 9 Unmodified _DYFFKPVLF_ 0 0 0 ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3109130859375 2 588.310418 1174.60628 2.2162 0.0013038 -0.1465 -8.6185E-05 2.0697 0.0012176 588.3102469507788 95.14 0.43724 95.145 94.942 95.379 0.004158 57 15 5 0 0 0 0.039985 2 52813 52813;52910 49.933 34.086 1 37185000 6934 12306 4731 4834 8058;8059 8058 0.025963881425013824 DYFFKPVLF 9 Unmodified _DYFFKPVLF_ 0 0 0 ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF ENST00000369452.8_1_10:112723943-112724024:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.30859375 2 588.310418 1174.60628 1.2615 0.00074217 -0.86938 -0.00051146 0.39216 0.00023071 588.3098024224543 100.08 0.23805 93.906 93.792 94.03 -6.1757 43 14 5 0 0 0 0.06294 1 66809 66809 41.84 25.992 1 264770000 6935 12306 4731 4834 8060 8060 0.025963881425013824 DYFSCPPKF 9 Carbamidomethyl (C) _DYFSC(Carbamidomethyl (C))PPKF_ DYFSC(1)PPKF DYFSC(48)PPKF 0 1 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2 ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2590942382812 2 580.757692 1159.50083 1.4377 0.00083496 -1.0713 -0.00062216 0.36642 0.0002128 580.7572122111033 64.182 0.3271 58.006 57.935 58.262 -6.1757 28 16 2 0 0 0 0.044011 1 41682 41682 47.749 25.012 1 13626000 6936 10689;12171 4732 4835 8061 8061 948 -0.072538960454267 DYFTEQHTF 9 Unmodified _DYFTEQHTF_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2548828125 2 594.253828 1186.4931 -0.16782 -9.973E-05 2.9386 0.0017463 2.7708 0.0016466 594.2559501410489 56.117 0.18503 50.14 50.002 50.187 -5.9769 12 10 2 0 0 0 0.018301 1 35773 35773 65.235 38.967 1 13656000 6937 598 4733 4836 8062 8062 -0.09268332041324356 DYGGDCHYEC 10 Unmodified _DYGGDCHYEC_ 0 0 0 REV__ENSG00000102359|ENST00000373004|SRPX2 REV__ENSG00000102359|ENST00000373004|SRPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.18310546875 2 581.184231 1160.35391 0.44629 0.00025938 -3.1116 -0.0018084 -2.6653 -0.001549 581.1824688529751 49.997 0.23153 49.997 49.883 50.114 0 18 10 2 0 0 0 0.71123 1 27541 27541 1.6526 1.1943 1 4406200 + 6938 18235 4734 4837 8063 8063 -0.21985360992653113 DYGKDYTLI 9 Unmodified _DYGKDYTLI_ 0 0 0 nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1 nc|ENSG00000197057|Q6ZMT9-2|DTHD1 nc|ENSG00000197057|Q6ZMT9-2|DTHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.26904296875 2 544.268947 1086.52334 0.23507 0.00012794 0.23561 0.00012824 0.47069 0.00025618 544.269100039718 87.868 0.33019 87.364 87.177 87.507 -0.50423 26 15 2 0 0 0 0.43515 1 48031 48031 15.847 6.4997 1 1161300 6939 9903 4735 4838 8064 8064 -0.01645973376139409 DYGPGVRFVRF 11 Unmodified _DYGPGVRFVRF_ 0 0 0 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.565673828125 3 438.231412 1311.67241 0.59341 0.00026005 -0.38539 -0.00016889 0.20802 9.116E-05 438.2313625694038 59.243 0.26289 59.19 59.03 59.293 -0.053062 32 12 4 0 0 0 0.15252 1 32242 32242 36.395 10.398 1 10810000 6940 3234 4736 4839 8065 8065 0.029035970372660813 DYHAAVHL 8 Unmodified _DYHAAVHL_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2;REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2380981445312 2 463.229959 924.445365 NaN NaN NaN NaN NaN NaN NaN 103.37 1 103.32 102.82 103.82 -0.047928 0 0 0 0.97444 1 57403 57403 0.79363 0 1 + 6941 21053;20769 4737 4840 8066 8066 -0.01987941450852304 DYHCNWCL 8 Unmodified _DYHCNWCL_ 0 0 0 REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF REV__ENST00000340700.9_1_14:88693854-88707099:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.1997680664062 2 527.199487 1052.38442 NaN NaN NaN NaN NaN NaN NaN 64.94 1 64.94 64.44 65.44 0 0 0 0 0.97444 1 36222 36222 2.5775 0 1 + 6942 25696 4738 4841 8067 8067 -0.1396753781696134 DYHRSIRH 8 Unmodified _DYHRSIRH_ 0 0 0 nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4;ENST00000493114.1_1_6:406896-407595:+|nuORF nc|ENSG00000137265|Q15306-2|IRF4 nc|ENSG00000137265|Q15306-2|IRF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8514099121094 3 361.852935 1082.53697 NaN NaN NaN NaN NaN NaN NaN 92.438 1 92.438 91.938 92.938 0 0 0 0 0.97444 1 51115 51115 1.8442 0.97986 1 6943 4918 4739 4842 8068 8068 -0.0009925803367423214 DYHRYLAEF 9 Unmodified _DYHRYLAEF_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000453697.1_1_7:63894611-63894797:+|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.2845458984375 2 607.285463 1212.55637 0.27034 0.00016417 -3.2907 -0.0019984 -3.0203 -0.0018342 607.784473383535 53.7 0.21391 53.7 53.606 53.82 0 23 9 3 0 0 0 0.033587 1 29763 29763 53.404 40.362 1 3518600 6944 2621 4740 4843 8069 8069 -0.041403465334497014 DYHRYLAEF 9 Unmodified _DYHRYLAEF_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000453697.1_1_7:63894611-63894797:+|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2857666015625 2 607.285463 1212.55637 0.17035 0.00010345 0.58405 0.00035468 0.75439 0.00045813 607.2851465808895 54.306 0.35641 53.84 53.547 53.904 -0.46664 33 17 3 0 0 0 0.0032147 1 29401 29401 125.53 81.671 1 8211400 6945 2621 4740 4843 8070 8070 -0.041403465334497014 DYHRYLAEF 9 Unmodified _DYHRYLAEF_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000453697.1_1_7:63894611-63894797:+|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5271301269531 3 405.192734 1212.55637 0.18516 7.5026E-05 -0.38851 -0.00015742 -0.20335 -8.2394E-05 405.19264465634495 54.303 0.21633 53.837 53.687 53.904 -0.46664 22 10 3 0 0 0 0.21643 1 29405 29405 15.739 12.152 1 5066800 6946 2621 4740 4843 8071 8071 -0.041403465334497014 DYHTKLFLI 9 Unmodified _DYHTKLFLI_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8816528320312 3 383.881608 1148.623 -0.050585 -1.9419E-05 0.9635 0.00036987 0.91291 0.00035045 383.88192391357285 69.489 0.3735 69.01 68.829 69.203 -0.47903 41 15 3 0 0 0 0.14 2 37964 37964;38067 27.223 19.746 1 4952700 6947 8499 4741 4844 8072;8073 8072 0.054628890284675435 DYHTKLFLI 9 Unmodified _DYHTKLFLI_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3201293945312 2 575.318774 1148.623 NaN NaN NaN NaN NaN NaN NaN 69.494 1 69.015 68.515 69.515 -0.47903 0 0 0 0.026638 1 37990 37990 70.332 39.064 1 6948 8499 4741 4844 8074 8074 0.054628890284675435 DYHTKLFLI 9 Unmodified _DYHTKLFLI_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8818359375 3 383.881608 1148.623 0.53741 0.0002063 0.098206 3.7699E-05 0.63561 0.000244 383.88161450564013 68.996 0.38336 69.027 68.823 69.207 0.030914 43 18 3 0 0 0 0.05447 1 37866 37866 40.239 29.34 1 9752400 6949 8499 4741 4844 8075 8075 0.054628890284675435 DYHTKLFLI 9 Unmodified _DYHTKLFLI_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3201293945312 2 575.318774 1148.623 0.70501 0.0004056 0.9756 0.00056128 1.6806 0.00096689 575.3194215703833 69.009 0.44969 69.04 68.823 69.273 0.030914 49 21 3 0 0 0 0.010301 1 37910 37910 79.596 41.622 1 11583000 6950 8499 4741 4844 8076 8076 0.054628890284675435 DYHTKLFLI 9 Unmodified _DYHTKLFLI_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8822021484375 3 383.881608 1148.623 1.3129 0.000504 1.1257 0.00043212 2.4386 0.00093613 383.88156189067996 92.403 0.54836 86.227 85.952 86.5 -6.1757 76 32 3 0 0 0 0.14 2 61121 60999;61121 21.59 11.743 1 32351000 6951 8499 4741 4844 8077;8078 8078 0.054628890284675435 DYIDTIWKI 9 Unmodified _DYIDTIWKI_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8082885742188 2 583.808239 1165.60193 0.40072 0.00023394 0.33417 0.00019509 0.73489 0.00042904 583.8084076678774 86.698 0.34752 86.195 85.996 86.344 -0.50318 35 13 3 0 0 0 0.014417 1 47393 47393 69.105 46.369 1 4019400 6952 6424 4742 4845 8079 8079 0.025748789289536944 DYIDTIWKI 9 Unmodified _DYIDTIWKI_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8089599609375 2 583.808239 1165.60193 1.0915 0.00063722 -1.4548 -0.0008493 -0.36328 -0.00021208 583.8070505456797 98.459 0.18911 92.284 92.176 92.365 -6.1757 29 12 3 0 0 0 0.014417 1 65292 65292 69.105 36.799 1 113920000 6953 6424 4742 4845 8080 8080 0.025748789289536944 DYIFVAMLL 9 Unmodified _DYIFVAMLL_ 0 0 0 ENSG00000131374|ENST00000696125|TBC1D5;nc|ENSG00000131374|Q92609|TBC1D5;ENST00000414318.2_1_3:17349484-18486265:-|nuORF ENSG00000131374|ENST00000696125|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 MSMS AL20221201_MKP_PDAC_01 4 543.2689819335938 2 542.791004 1083.56745 NaN NaN NaN NaN NaN NaN NaN 99.736 1 93.561 93.061 94.061 -6.1757 0 0 0 0.40995 1 66508 66508 19.439 1.304 1 6954 4318 4743 4846 8081 8081 0.02901339516506596 DYIIAPARHS 10 Unmodified _DYIIAPARHS_ 0 0 0 REV__ENSG00000064763|ENST00000536681|FAR2 REV__ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8004760742188 2 571.80128 1141.58801 0.65164 0.00037261 -0.48195 -0.00027558 0.16968 9.7025E-05 571.8008939022027 85.878 0.3652 85.377 85.207 85.572 -0.5015 43 14 4 0 0 0 0.6067 1 46963 46963 10.8 0 1 1708500 + 6955 17361 4744 4847 8082 8082 0.022876462204976633 DYIIRTNRL 9 Unmodified _DYIIRTNRL_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5567626953125 3 388.555895 1162.64586 1.0408 0.00040442 2.0777 0.00080732 3.1186 0.0012117 388.5567068216946 45.921 0.39389 40.966 40.832 41.226 -4.9549 50 25 3 0 0 0 0.18144 1 28257 28257 18.721 2.9826 1 26575000 6956 676 4745 4848 8083 8083 0.071039081459503 DYIKFLRSI 9 Unmodified _DYIKFLRSI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF ENSG00000116478|ENST00000373548|HDAC1 ENSG00000116478|ENST00000373548|HDAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8915405273438 3 385.557125 1153.64954 0.50134 0.0001933 -0.16319 -6.292E-05 0.33815 0.00013038 385.5572475865741 71.347 0.24927 70.869 70.726 70.975 -0.47735 23 10 3 0 0 0 0.48396 1 39096 39096 8.4443 3.5473 1 867750 6957 3221 4746 4849 8084 8084 0.07886577919794036 DYIKFLRSI 9 Unmodified _DYIKFLRSI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF ENSG00000116478|ENST00000373548|HDAC1 ENSG00000116478|ENST00000373548|HDAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.557373046875 3 385.557125 1153.64954 1.0514 0.00040539 -0.668 -0.00025755 0.38343 0.00014783 385.55682847558995 70.848 0.66178 70.883 70.636 71.298 0.035515 90 29 5 0 0 0 0.2289 2 39026 38917;39026 20.581 9.0862 1 172300000 6958 3221 4746 4849 8085;8086 8086 0.07886577919794036 DYIKFLRSI 9 Unmodified _DYIKFLRSI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF ENSG00000116478|ENST00000373548|HDAC1 ENSG00000116478|ENST00000373548|HDAC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5574645996094 3 385.557125 1153.64954 1.3875 0.00053497 -0.17025 -6.5639E-05 1.2173 0.00046933 385.55701984977725 92.242 0.52476 86.067 85.806 86.331 -6.1757 83 31 4 0 0 0 0.094905 2 60899 60899;61025 34.222 23.422 1 191490000 6959 3221 4746 4849 8087;8088 8087 0.07886577919794036 DYIKFLRSI 9 Unmodified _DYIKFLRSI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF ENSG00000116478|ENST00000373548|HDAC1 ENSG00000116478|ENST00000373548|HDAC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8319091796875 2 577.832049 1153.64954 1.0196 0.00058917 -0.062692 -3.6226E-05 0.95694 0.00055295 577.8310110923433 92.247 0.38177 86.071 85.853 86.235 -6.1757 35 22 2 0 0 0 0.065007 1 60994 60994 37.075 16.621 1 81458000 6960 3221 4746 4849 8089 8089 0.07886577919794036 DYIKRVPSI 9 Unmodified _DYIKRVPSI_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2119140625 3 364.213358 1089.61824 -0.17972 -6.5456E-05 -1.1524 -0.00041973 -1.3321 -0.00048518 364.2127243708261 41.502 0.32251 41.199 40.964 41.287 -0.30304 33 14 3 0 0 0 0.13231 1 21985 21985 34.222 18.073 1 8558800 6961 3869 4747 4850 8090 8090 0.07702004885709357 DYIKRVPSI 9 Unmodified _DYIKRVPSI_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2138671875 3 364.213358 1089.61824 1.1032 0.0004018 0.33853 0.0001233 1.4417 0.0005251 364.213456283183 46.491 0.2857 41.41 41.189 41.475 -5.0805 50 26 3 0 0 0 0.1685 1 28691 28691 24.882 9.6331 1 52293000 6962 3869 4747 4850 8091 8091 0.07702004885709357 DYIKRVPSI 9 Unmodified _DYIKRVPSI_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MSMS AL20221201_MKP_PDAC_01 4 546.2748413085938 2 545.816399 1089.61824 NaN NaN NaN NaN NaN NaN NaN 46.584 1 41.503 41.003 42.003 -5.0805 0 0 0 0.51965 1 28813 28813 15.248 0.41021 1 6963 3869 4747 4850 8092 8092 0.07702004885709357 DYIKRVPSI 9 Unmodified _DYIKRVPSI_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 364.213358 1089.61824 -0.53377 -0.00019441 -0.90492 -0.00032958 -1.4387 -0.00052399 364.2131060199817 41.169 0.32065 41.169 41.005 41.325 0 -0.078301 -0.00059662 NaN 34.222 38 15 4 NaN NaN NaN NaN 0 NaN NaN 0 3579300 6964 3869 4747 4850 0.07702004885709357 DYIKRVPSI 9 Unmodified _DYIKRVPSI_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 364.213358 1089.61824 -0.0083414 -3.038E-06 -0.21385 -7.7887E-05 -0.22219 -8.0925E-05 364.2134121398337 41.214 0.28438 41.212 41.075 41.359 -0.0017891 -0.035498 0.00015847 NaN 34.222 23 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1570300 6965 3869 4747 4850 0.07702004885709357 DYILNVMKF 9 Oxidation (M) _DYILNVM(Oxidation (M))KF_ DYILNVM(1)KF DYILNVM(59)KF 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7979125976562 2 579.796817 1157.57908 0.17888 0.00010371 -0.95659 -0.00055463 -0.77771 -0.00045091 579.7967426742642 66.406 0.4902 65.923 65.744 66.235 -0.48323 83 24 5 0 0 0 0.024882 2 36194 36194;36305 58.679 39.422 1 43560000 6966 1444 4748 4851 8093;8094 8093 246 0.006595365398197828 DYILNVMKF 9 Oxidation (M) _DYILNVM(Oxidation (M))KF_ DYILNVM(1)KF DYILNVM(56)KF 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7962646484375 2 579.796817 1157.57908 1.0198 0.00059129 0.061394 3.5596E-05 1.0812 0.00062689 580.2983808356234 72.064 0.50328 65.888 65.676 66.179 -6.1757 43 26 2 0 0 0 0.028475 2 47125 47125;47259 56.177 39.064 1 34066000 6967 1444 4748 4851 8095;8096 8095 246 0.006595365398197828 DYILNVMKF 9 Unmodified _DYILNVMKF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8002319335938 2 571.79936 1141.58417 -0.26346 -0.00015065 2.3559 0.0013471 2.0925 0.0011965 571.7996202714487 85.317 0.25346 85.378 85.26 85.514 0.061638 23 9 3 0 0 0 0.014182 1 47228 47228 85.642 49.135 1 22692000 6968 1444 4748 4852 8097 8097 0.01903840402451351 DYILNVMKF 9 Unmodified _DYILNVMKF_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.799560546875 2 571.79936 1141.58417 1.572 0.00089884 0.70162 0.00040119 2.2736 0.0013 571.79997043638 98.331 0.25105 92.155 92.042 92.293 -6.1757 50 16 4 0 0 0 0.053952 1 65191 65191 56.177 39.235 1 389340000 6969 1444 4748 4852 8098 8098 0.01903840402451351 DYIPQLAKF 9 Unmodified _DYIPQLAKF_ 0 0 0 ENST00000469774.1_1_2:191760380-191769916:+|nuORF;nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS ENST00000469774.1_1_2:191760380-191769916:+|nuORF ENST00000469774.1_1_2:191760380-191769916:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7994995117188 2 547.797675 1093.5808 0.034857 1.9095E-05 1.4224 0.00077919 1.4573 0.00079828 547.7981660049032 69.129 0.32307 68.648 68.485 68.808 -0.48071 31 13 3 0 0 0 0.047196 1 37762 37762 46.021 29.079 1 3456300 6970 3122 4749 4853 8099 8099 0.03774913620077314 DYIPQLAKF 9 Unmodified _DYIPQLAKF_ 0 0 0 ENST00000469774.1_1_2:191760380-191769916:+|nuORF;nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS ENST00000469774.1_1_2:191760380-191769916:+|nuORF ENST00000469774.1_1_2:191760380-191769916:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 547.7980346679688 2 547.797675 1093.5808 NaN NaN NaN NaN NaN NaN NaN 76.308 1 70.132 69.632 70.632 -6.1757 0 0 0 0.14 1 49915 49915 37.974 14.826 1 6971 3122 4749 4853 8100 8100 0.03774913620077314 DYIPQLAKF 9 Unmodified _DYIPQLAKF_ 0 0 0 ENST00000469774.1_1_2:191760380-191769916:+|nuORF;nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS ENST00000469774.1_1_2:191760380-191769916:+|nuORF ENST00000469774.1_1_2:191760380-191769916:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 547.799072265625 2 547.797675 1093.5808 NaN NaN NaN NaN NaN NaN NaN 76.608 1 70.432 69.932 70.932 -6.1757 0 0 0 0.32177 1 50111 50111 24.021 5.8742 1 6972 3122 4749 4853 8101 8101 0.03774913620077314 DYIQKHPEL 9 Unmodified _DYIQKHPEL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8675231933594 3 381.532868 1141.57677 -1.2421 -0.00047392 1.8888 0.00072065 0.64668 0.00024673 381.53297912501654 32.553 0.18688 32.553 32.472 32.658 0 26 10 3 0 0 0 0.032796 1 17026 17026 49.527 25.737 1 3789900 6973 2558 4750 4854 8102 8102 0.011648241263856107 DYIQKHPEL 9 Unmodified _DYIQKHPEL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 381.532868 1141.57677 1.646 0.00062802 0.5796 0.00022113 2.2256 0.00084915 381.53269091365956 37.134 0.44033 32.851 32.632 33.072 -4.2835 0.14913 -0.00034699 NaN 49.527 40 26 2 NaN NaN NaN NaN 0 NaN NaN 0 9296900 6974 2558 4750 4854 0.011648241263856107 DYISAIQSI 9 Unmodified _DYISAIQSI_ 0 0 0 BANK1|p.V149A|1|0.21|ENSG00000153064|chr4:101830183-101830183|T/C|missense_variant BANK1|p.V149A|1|0.21|ENSG00000153064|chr4:101830183-101830183|T/C|missense_variant BANK1|p.V149A|1|0.21|ENSG00000153064|chr4:101830183-101830183|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2639465332031 2 505.263665 1008.51278 NaN NaN NaN NaN NaN NaN NaN 39.162 1 39.162 38.662 39.662 0 0 0 0 0.17247 1 20969 20969 34.102 0 1 6975 42 4751 4855 8103 8103 0.008860439694331035 DYITGALQI 9 Unmodified _DYITGALQI_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2676391601562 2 497.266207 992.517862 0.25481 0.00012671 0.62009 0.00030835 0.8749 0.00043506 497.26662999664285 76.785 0.16714 76.785 76.685 76.852 0 9 6 2 0 0 0 0.49272 1 42699 42699 7.9102 0.62092 1 830550 6976 4760 4752 4856 8104 8104 0.02130347832053303 DYKESFNTI 9 Unmodified _DYKESFNTI_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;ENSG00000134317|ENST00000324907|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7644653320312 2 558.764029 1115.5135 0.083827 4.684E-05 1.0232 0.00057172 1.107 0.00061856 558.764414252511 44.445 0.28595 44.445 44.305 44.591 0 29 14 3 0 0 0 0.0024112 1 24147 24147 129.77 71.094 1 44180000 6977 1363;4590 4753 4857 8105 8105 -0.03963161381511782 DYKESFNTI 9 Unmodified _DYKESFNTI_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;ENSG00000134317|ENST00000324907|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7642822265625 2 558.764029 1115.5135 1.1628 0.00064971 0.061198 3.4195E-05 1.224 0.0006839 558.7640609264105 51.056 0.37134 45.406 45.2 45.572 -5.649 47 22 3 0 0 0 0.0024112 2 32146 32018;32146 129.77 71.094 1 74451000 6978 1363;4590 4753 4857 8106;8107 8107 -0.03963161381511782 DYKKLQEEF 9 Unmodified _DYKKLQEEF_ 0 0 0 REV__ENSG00000076201|ENST00000265562|PTPN23 REV__ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.301513671875 2 600.300778 1198.587 0.19671 0.00011809 0.69652 0.00041812 0.89324 0.00053621 600.3011187281878 46.64 0.37143 46.64 46.391 46.762 0 34 16 3 0 0 0 0.25681 1 25479 25479 19.257 1.1106 1 3792100 + 6979 17584 4754 4858 8108 8108 -0.004346129390569331 DYKLVVSI 8 Unmodified _DYKLVVSI_ 0 0 0 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 937.1146240234375 1 936.54006 935.532783 0.41934 0.00039273 0.10868 0.00010179 0.52802 0.00049451 936.5407879584441 86.707 0.25491 86.203 86.115 86.37 -0.50318 14 9 2 0 0 0 0.80232 1 47418 47418 5.2307 0.90143 1 725380 + 6980 17445 4755 4859 8109 8109 0.06243839700061926 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8008422851562 2 599.798206 1197.58186 0.82648 0.00049572 1.206 0.00072338 2.0325 0.0012191 599.7988898454539 49.697 0.21626 49.305 49.178 49.395 -0.3923 17 10 2 0 0 0 0.044296 1 26740 26740 47.594 31.747 1 2754800 6981 7969 4756 4860 8110 8110 -0.00902872010988176 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2017211914062 3 400.201229 1197.58186 0.82026 0.00032827 -0.050892 -2.0367E-05 0.76937 0.0003079 400.20130265629973 49.697 0.2938 49.305 49.119 49.412 -0.3923 41 14 4 0 0 0 0.06294 1 26782 26782 32.037 24.092 1 8450000 6982 7969 4756 4860 8111 8111 -0.00902872010988176 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2013549804688 3 400.201229 1197.58186 0.42023 0.00016818 0.22225 8.8945E-05 0.64248 0.00025712 400.20132359074347 49.368 0.363 49.324 49.134 49.497 -0.04369 47 17 4 0 0 0 0.024882 1 26651 26651 45.74 35.425 1 16269000 6983 7969 4756 4860 8112 8112 -0.00902872010988176 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7979736328125 2 599.798206 1197.58186 0.46447 0.00027859 0.2323 0.00013933 0.69677 0.00041792 599.7982724656964 49.37 0.28044 49.326 49.155 49.436 -0.04369 33 13 3 0 0 0 0.0085366 1 26653 26653 90.135 70.773 1 5393600 6984 7969 4756 4860 8113 8113 -0.00902872010988176 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7991943359375 2 599.798206 1197.58186 0.52386 0.00031421 0.21851 0.00013106 0.74236 0.00044527 599.7981730586016 54.341 0.41627 48.476 48.266 48.682 -5.8653 45 25 2 0 0 0 0.0085526 2 34359 34359;34509 107.56 74.778 1 69985000 6985 7969 4756 4860 8114;8115 8114 -0.00902872010988176 DYKNTFPKW 9 Unmodified _DYKNTFPKW_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2017822265625 3 400.201229 1197.58186 1.2407 0.00049651 0.93404 0.00037381 2.1747 0.00087032 400.2014577650917 54.352 0.80241 48.487 48.175 48.977 -5.8653 63 48 2 0 0 0 0.070838 2 34360 34360;34517 29.841 23.217 1 80368000 6986 7969 4756 4860 8116;8117 8116 -0.00902872010988176 DYKPSFPKW 9 Unmodified _DYKPSFPKW_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2 ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2000427246094 3 389.865958 1166.57605 NaN NaN NaN NaN NaN NaN NaN 54.554 1 54.487 53.987 54.987 -0.066936 0 0 0 0.29524 1 29628 29628 29.841 19.041 1 6987 3704 4757 4861 8118 8118 -0.0005797052267553227 DYKQERYF 8 Unmodified _DYKQERYF_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7722778320312 2 574.772188 1147.52982 1.0819 0.00062182 0.017898 1.0287E-05 1.0998 0.00063211 574.7727103926688 42.742 0.72747 38.057 37.858 38.585 -4.6846 116 47 4 0 0 0 0.64853 1 26198 26198 21.747 5.5975 1 136790000 6988 385 4758 4862 8119 8119 -0.03804035424764152 DYKRLFFRF 9 Unmodified _DYKRLFFRF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.2366943359375 3 431.236385 1290.68733 0.4287 0.00018487 0.057241 2.4684E-05 0.48594 0.00020956 431.23629019587503 62.727 0.30907 62.706 62.542 62.851 -0.021614 53 15 5 0 0 0 0.07916 2 34248 34248;34363 28.495 23.966 1 30837000 6989 7704 4759 4863 8120;8121 8120 0.05361088905260658 DYKRLFFRF 9 Unmodified _DYKRLFFRF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2364501953125 3 431.236385 1290.68733 0.38988 0.00016813 0.69712 0.00030063 1.087 0.00046876 431.23636390578656 92.991 0.24885 86.815 86.683 86.932 -6.1757 37 15 4 0 0 0 0.013041 1 61523 61523 57.249 45.022 1 26059000 6990 7704 4759 4863 8122 8122 0.05361088905260658 DYKTVNNLL 9 Unmodified _DYKTVNNLL_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2901000976562 2 540.290214 1078.56587 -0.12283 -6.6362E-05 0.52803 0.00028529 0.4052 0.00021893 540.290520125679 52.068 0.29238 52.068 51.93 52.223 0 29 12 3 0 0 0 0.024882 1 28833 28833 58.679 26.373 1 19914000 6991 1567 4760 4864 8123 8123 0.029734217520854145 DYKTVNNLL 9 Unmodified _DYKTVNNLL_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2911987304688 2 540.290214 1078.56587 0.3258 0.00017602 0.87426 0.00047236 1.2001 0.00064838 540.2911012804092 52.516 0.21324 52.083 52.003 52.216 -0.43367 23 10 3 0 0 0 0.06294 1 28405 28405 41.84 5.7954 1 3902200 6992 1567 4760 4864 8124 8124 0.029734217520854145 DYKTVNNLL 9 Unmodified _DYKTVNNLL_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MSMS AL20221201_MKP_PDAC_01 4 540.2915649414062 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 59.158 1 53.083 52.583 53.583 -6.0745 0 0 0 0.0084204 1 37954 37954 96.111 43.843 1 6993 1567 4760 4864 8125 8125 0.029734217520854145 DYLDIYAIGVG 11 Unmodified _DYLDIYAIGVG_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8030395507812 2 599.803154 1197.59175 -0.024459 -1.4671E-05 0.30223 0.00018128 0.27777 0.00016661 599.8033458907769 82.375 0.25456 82.375 82.225 82.48 0 13 10 2 0 0 0 0.68427 1 45706 45706 5.7319 1.4026 1 521270 6994 7465 4761 4865 8126 8126 0.0008627120369055774 DYLDSIYFNRF 11 Unmodified _DYLDSIYFNRF_ 0 0 0 nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6 nc|ENSG00000198055|P43250-3|GRK6 nc|ENSG00000198055|P43250-3|GRK6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.8438720703125 2 726.843342 1451.67213 NaN NaN NaN NaN NaN NaN NaN 83.37 1 82.873 82.373 83.373 -0.49751 0 0 0 0.90364 1 45636 45636 7.1017 4.3665 1 6995 10043 4762 4866 8127 8127 -0.03563867473258142 DYLDSKRNAFP 11 Unmodified _DYLDSKRNAFP_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.3279418945312 2 663.327859 1324.64116 0.76793 0.00050939 2.1907 0.0014531 2.9586 0.0019625 663.3296460059661 71.905 0.20181 71.944 71.871 72.073 0.039024 16 9 2 0 0 0 0.48742 1 39610 39610 16.149 0 1 1930100 6996 9988 4763 4867 8128 8128 -0.008170207874627522 DYLEHITSI 9 Unmodified _DYLEHITSI_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF;ENST00000214893.9_1_9:5823966-5832826:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7748413085938 2 545.774396 1089.53424 0.38294 0.000209 0.78989 0.0004311 1.1728 0.0006401 545.7746434008777 61.194 0.39077 61.194 60.975 61.366 0 56 16 4 0 0 0 0.0082661 2 34174 34079;34174 92.491 50.397 1 32655000 6997 1687 4764 4868 8129;8130 8130 -0.006945710018499085 DYLEHITSI 9 Unmodified _DYLEHITSI_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF;ENST00000214893.9_1_9:5823966-5832826:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.774658203125 2 545.774396 1089.53424 0.049979 2.7277E-05 0.83732 0.00045699 0.8873 0.00048426 545.7745904727033 61.754 0.32962 61.266 61.097 61.426 -0.48764 49 15 4 0 0 0 0.0083938 2 33687 33587;33687 108 57.142 1 28697000 6998 1687 4764 4868 8131;8132 8132 -0.006945710018499085 DYLEHITSI 9 Unmodified _DYLEHITSI_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF;ENST00000214893.9_1_9:5823966-5832826:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7744140625 2 545.774396 1089.53424 0.70049 0.00038231 0.29417 0.00016055 0.99465 0.00054286 545.7745122857283 68.42 0.80468 62.244 61.957 62.762 -6.1757 86 46 2 0 0 0 0.022193 1 44730 44730 61.357 25.23 1 103700000 6999 1687 4764 4868 8133 8133 -0.006945710018499085 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.861083984375 3 374.525713 1120.55531 0.28933 0.00010836 -0.082183 -3.078E-05 0.20715 7.7583E-05 374.5256215363826 50.733 0.41997 50.733 50.518 50.938 0 77 23 4 0 0 0 0.08691 2 27905 27905;28008 33.445 21.204 1 155650000 7000 4055 4765 4869 8134;8135 8134 -0.00014560902332050318 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2852783203125 2 561.284931 1120.55531 0.58616 0.000329 -0.61133 -0.00034313 -0.025169 -1.4127E-05 561.2846674328018 50.737 0.35718 50.737 50.518 50.875 0 64 20 4 0 0 0 0.028475 2 27925 27925;28034 56.177 36.92 1 89135000 7001 4055 4765 4869 8136;8137 8136 -0.00014560902332050318 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.5257873535156 3 374.525713 1120.55531 -0.10271 -3.8467E-05 0.18882 7.0718E-05 0.086111 3.2251E-05 374.5257353118851 51.303 0.3657 50.89 50.698 51.064 -0.41351 75 18 5 0 0 0 0.05447 2 27696 27585;27696 33.445 21.95 1 221340000 7002 4055 4765 4869 8138;8139 8139 -0.00014560902332050318 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2850341796875 2 561.284931 1120.55531 0.082569 4.6345E-05 -0.82869 -0.00046513 -0.74612 -0.00041879 561.2842837281189 51.317 0.48962 50.903 50.538 51.028 -0.41351 56 24 4 0 0 0 0.044011 2 27607 27607;27720 47.749 31.902 1 124400000 7003 4055 4765 4869 8140;8141 8140 -0.00014560902332050318 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5264587402344 3 374.525713 1120.55531 0.34319 0.00012853 0.13518 5.0628E-05 0.47837 0.00017916 374.5256660913164 50.93 0.29853 50.876 50.728 51.026 -0.053871 43 14 4 0 0 0 0.05447 2 27513 27513;27612 33.445 25.289 1 11770000 7004 4055 4765 4869 8142;8143 8142 -0.00014560902332050318 DYLEVAKHF 9 Unmodified _DYLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5262145996094 3 374.525713 1120.55531 1.166 0.0004367 0.04931 1.8468E-05 1.2153 0.00045517 374.52566873396444 56.91 0.75766 50.933 50.649 51.407 -5.9769 123 43 4 0 0 0 0.05447 4 36472 36215;36335;36472;36622 33.445 25.836 1 583740000 7005 4055 4765 4869 8144;8145;8146;8147 8146 -0.00014560902332050318 DYLEWPEYF 9 Unmodified _DYLEWPEYF_ 0 0 0 ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD ENSG00000129187|ENST00000438320|DCTD ENSG00000129187|ENST00000438320|DCTD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.2754516601562 2 631.274229 1260.53391 0.15806 9.978E-05 2.2973 0.0014502 2.4553 0.00155 631.2756771257838 98.453 0.25794 98.453 98.294 98.552 0 21 8 3 0 0 0 0.2546 1 54364 54364 26.884 21.587 1 1149500 7006 4119 4766 4870 8148 8148 -0.08593990721715272 DYLEWPEYF 9 Unmodified _DYLEWPEYF_ 0 0 0 ENSG00000129187|ENST00000438320|DCTD;nc|ENSG00000129187|P32321-2|DCTD ENSG00000129187|ENST00000438320|DCTD ENSG00000129187|ENST00000438320|DCTD MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.775146484375 2 631.274229 1260.53391 0.92304 0.00058269 0.043503 2.7462E-05 0.96654 0.00061015 631.274226988679 100.74 0.17882 94.566 94.472 94.651 -6.1757 41 12 4 0 0 0 0.044296 1 67403 67403 61.357 51.284 1 460890000 7007 4119 4766 4870 8149 8149 -0.08593990721715272 DYLFFYKL 8 Unmodified _DYLFFYKL_ 0 0 0 REV__ENST00000494765.1_1_1:63894353-63894473:+|nuORF REV__ENST00000494765.1_1_1:63894353-63894473:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7904663085938 2 554.789318 1107.56408 0.4825 0.00026768 -0.56498 -0.00031345 -0.082487 -4.5763E-05 554.7893330387728 79.412 0.26212 79.412 79.326 79.588 0 18 10 2 0 0 0 0.80624 1 44105 44105 2.8892 0 1 445420 + 7008 27942 4767 4871 8150 8150 0.014604127341499407 DYLHMVHRL 9 Unmodified _DYLHMVHRL_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2057495117188 3 395.206209 1182.5968 1.1005 0.00043493 -0.31348 -0.00012389 0.78704 0.00031104 395.2059666179971 48.304 0.34546 43.07 42.87 43.216 -5.2339 32 20 2 0 0 0 0.12424 1 30043 30043 22.658 17.761 1 19265000 7009 7161 4768 4872 8151 8151 0.012802965853325077 DYLKGLASF 9 Unmodified _DYLKGLASF_ 0 0 0 ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2685852050781 2 507.26875 1012.52295 0.29597 0.00015014 -0.74979 -0.00038035 -0.45383 -0.00023021 507.26817490751114 68.064 0.1613 67.582 67.475 67.637 -0.48219 12 7 2 0 0 0 0.15471 1 37203 37203 27.629 13.723 1 1547100 7010 5543 4769 4873 8152 8152 0.017186516946708252 DYLKHQPEI 9 Unmodified _DYLKHQPEI_ 0 0 0 ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP ENST00000512908.2_1_5:70398727-70422449:-|nuORF ENST00000512908.2_1_5:70398727-70422449:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8478698730469 3 381.532868 1141.57677 -1.2421 -0.00047392 1.8888 0.00072065 0.64668 0.00024673 381.53297912501654 32.553 0.18688 32.553 32.472 32.658 0 26 10 3 0 0 0 0.39863 1 16967 16967 8.1555 0 1 3789900 7011 10746 4770 4874 8153 8153 0.011648241263856107 DYLKNTYRL 9 Unmodified _DYLKNTYRL_ 0 0 0 ENST00000461836.5_1_2:162903409-162929972:-|nuORF;ENSG00000197635|ENST00000360534|DPP4 ENST00000461836.5_1_2:162903409-162929972:-|nuORF ENST00000461836.5_1_2:162903409-162929972:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.8802795410156 3 395.880267 1184.61897 0.078366 3.1024E-05 -0.76821 -0.00030412 -0.68984 -0.00027309 395.8797311533145 42.197 0.30873 42.197 42.03 42.339 0 31 15 3 0 0 0 0.078314 2 22890 22775;22890 42.312 22.951 1 7548600 7012 9985 4771 4875 8154;8155 8155 0.034047995347464166 DYLKNTYRL 9 Unmodified _DYLKNTYRL_ 0 0 0 ENST00000461836.5_1_2:162903409-162929972:-|nuORF;ENSG00000197635|ENST00000360534|DPP4 ENST00000461836.5_1_2:162903409-162929972:-|nuORF ENST00000461836.5_1_2:162903409-162929972:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.88037109375 3 395.880267 1184.61897 NaN NaN NaN NaN NaN NaN NaN 42.539 1 42.232 41.732 42.732 -0.30682 0 0 0 0.076083 1 22600 22600 39.213 18.632 1 7013 9985 4771 4875 8156 8156 0.034047995347464166 DYLKNTYRL 9 Unmodified _DYLKNTYRL_ 0 0 0 ENST00000461836.5_1_2:162903409-162929972:-|nuORF;ENSG00000197635|ENST00000360534|DPP4 ENST00000461836.5_1_2:162903409-162929972:-|nuORF ENST00000461836.5_1_2:162903409-162929972:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3171997070312 2 593.316763 1184.61897 1.3265 0.00078704 -1.1334 -0.00067249 0.19308 0.00011456 593.3161920978974 47.572 0.34977 42.338 42.165 42.515 -5.2339 50 20 3 0 0 0 0.036857 1 29608 29608 51.63 7.8574 1 23512000 7014 9985 4771 4875 8157 8157 0.034047995347464166 DYLKRFYLY 9 Unmodified _DYLKRFYLY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.8373413085938 2 640.837331 1279.66011 0.28682 0.0001838 -1.1281 -0.0007229 -0.84124 -0.0005391 640.8368011486955 62.857 0.31507 62.371 62.207 62.522 -0.48617 37 15 3 0 0 0 0.0090524 1 34232 34232 85.642 35.709 1 29555000 7015 4956 4772 4876 8158 8158 0.03146560574236901 DYLKRFYLY 9 Unmodified _DYLKRFYLY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.3385620117188 2 640.837331 1279.66011 0.36556 0.00023427 -0.75132 -0.00048147 -0.38576 -0.00024721 640.8368048532849 62.382 0.59996 62.349 62.16 62.76 -0.032787 104 31 5 0 0 0 0.012668 2 34010 34010;34120 72.968 25.219 1 833290000 7016 4956 4772 4876 8159;8160 8159 0.03146560574236901 DYLKRFYLY 9 Unmodified _DYLKRFYLY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5604553222656 3 427.560646 1279.66011 0.35895 0.00015347 -0.61184 -0.0002616 -0.25288 -0.00010812 427.5603405520467 62.373 0.68052 62.341 62.14 62.82 -0.032787 123 35 5 0 0 0 0.45045 2 34019 34019;34274 6.6304 3.8952 1 1045899999.9999999 7017 4956 4772 4876 8161;8162 8161 0.03146560574236901 DYLKRFYLY 9 Unmodified _DYLKRFYLY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8388671875 2 640.837331 1279.66011 0.15794 0.00010122 0.039706 2.5445E-05 0.19765 0.00012666 640.8373110347549 84.663 1.229 78.488 77.68 78.909 -6.1757 258 69 5 0 0 0 0.0082475 6 55228 55228;55351;55472;55596;55732;55862 92.653 27.418 1 495690000 7018 4956 4772 4876 8163;8164;8165;8166;8167;8168 8163 0.03146560574236901 DYLKRFYLY 9 Unmodified _DYLKRFYLY_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5616149902344 3 427.560646 1279.66011 0.52101 0.00022276 0.14344 6.1331E-05 0.66445 0.00028409 427.5606602810418 84.624 1.4011 78.448 77.508 78.909 -6.1757 298 78 5 0 0 0 0.094149 7 55242 55242;55364;55494;55620;55755;55876;56006 45.74 19.472 1 623180000 7019 4956 4772 4876 8169;8170;8171;8172;8173;8174;8175 8169 0.03146560574236901 DYLNEWGNRF 10 Unmodified _DYLNEWGNRF_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;ENST00000562118.1_1_16:68857288-68867399:+|nuORF nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.2982177734375 2 657.299101 1312.58365 0.5273 0.00034659 1.1582 0.0007613 1.6855 0.0011079 657.298499251968 64.766 0.34312 64.28 64.147 64.49 -0.48512 29 15 3 0 0 0 0.018732 1 35315 35315 76.825 58.452 1 2092400 7020 639 4773 4877 8176 8176 -0.06013862993040675 DYLNVVNEL 9 Unmodified _DYLNVVNEL_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;ENST00000511724.1_1_5:102509577-102524329:+|nuORF nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7728881835938 2 539.774396 1077.53424 0.24223 0.00013075 1.9714 0.0010641 2.2136 0.0011949 539.7749736023733 78.347 0.2525 78.347 78.197 78.449 0 17 11 2 0 0 0 0.5029 1 43514 43514 7.2892 0 1 507480 7021 5717 4774 4878 8177 8177 -0.0014257100183385774 DYLPGHFHL 9 Unmodified _DYLPGHFHL_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8505859375 3 366.85042 1097.52943 0.28326 0.00010392 0.50486 0.00018521 0.78813 0.00028913 366.8505065980329 59.091 0.33974 58.601 58.453 58.792 -0.49079 30 15 3 0 0 0 0.22317 1 32146 32146 19.257 11.101 1 1547100 7022 339 4775 4879 8178 8178 -0.015434103539519128 DYLQEVPIL 9 Unmodified _DYLQEVPIL_ 0 0 0 ENSG00000156136|ENST00000286648|DCK;ENST00000509764.1_1_4:71891631-71892511:+|nuORF ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7982177734375 2 545.294965 1088.57538 0.82834 0.00045169 -0.43895 -0.00023936 0.38939 0.00021234 545.2946299819401 99.235 0.17086 93.059 92.957 93.128 -6.1757 18 9 3 0 0 0 0.013323 1 66030 66030 71.134 22.788 1 31008000 7023 6432 4776 4880 8179 8179 0.034631900376325575 DYLQQVSEL 9 Unmodified _DYLQQVSEL_ 0 0 0 ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2 ENST00000490579.1_1_3:183995094-184008674:+|nuORF ENST00000490579.1_1_3:183995094-184008674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.77587890625 2 547.771854 1093.52915 0.75445 0.00041327 3.3813 0.0018522 4.1357 0.0022654 547.774135138185 71.647 0.32027 71.686 71.447 71.768 0.039024 19 14 2 0 0 0 0.32871 1 39456 39456 15.847 1.0089 1 1917900 7024 5672 4777 4881 8180 8180 -0.01386874864465426 DYLRDPVTI 9 Unmodified _DYLRDPVTI_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2908935546875 2 546.290214 1090.56587 0.45039 0.00024604 -0.39101 -0.0002136 0.059379 3.2438E-05 546.2898479258528 57.976 0.54615 57.976 57.716 58.262 0 75 22 5 0 0 0 0.015688 2 32205 32205;32317 67.838 24.066 1 104490000 7025 10632 4778 4882 8181;8182 8181 0.02421421752092101 DYLRDPVTI 9 Unmodified _DYLRDPVTI_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.288818359375 2 546.290214 1090.56587 0.14355 7.8418E-05 -1.5117 -0.00082585 -1.3682 -0.00074743 546.289714474843 65.6 0.97878 59.424 58.884 59.862 -6.1757 130 56 4 0 0 0 0.037253 3 42489 42489;42616;42753 51.415 20.779 1 186240000 7026 10632 4778 4882 8183;8184;8185 8183 0.02421421752092101 DYLRLTPHQ 9 Unmodified _DYLRLTPHQ_ 0 0 0 REV__ENSG00000101138|ENST00000217109|CSTF1 REV__ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8014526367188 2 571.80128 1141.58801 0.65164 0.00037261 -0.48195 -0.00027558 0.16968 9.7025E-05 571.8008939022027 85.878 0.3652 85.377 85.207 85.572 -0.5015 43 14 4 0 0 0 0.51218 1 47056 47056 6.7232 0 1 1708500 + 7027 18133 4779 4883 8186 8186 0.022876462204976633 DYLSAFANSI 10 Unmodified _DYLSAFANSI_ 0 0 0 ENST00000455429.3_1_10:81800601-81800799:-|nuORF ENST00000455429.3_1_10:81800601-81800799:-|nuORF ENST00000455429.3_1_10:81800601-81800799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2684326171875 2 550.766571 1099.51859 0.41703 0.00022969 0.36233 0.00019956 0.77936 0.00042924 550.767235071018 58.55 0.40833 58.55 58.29 58.699 0 31 16 3 0 0 0 0.57893 1 32599 32599 12.241 0.60036 1 1418500 7028 13585 4780 4884 8187 8187 -0.027188575189029507 DYLSRVQGF 9 Unmodified _DYLSRVQGF_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7728881835938 2 542.774731 1083.53491 -0.076376 -4.1455E-05 -0.7427 -0.00040312 -0.81908 -0.00044457 542.7741326596378 54.36 0.3422 53.893 53.626 53.968 -0.46664 30 17 2 0 0 0 0.10247 1 29484 29484 32.786 7.3864 1 9461900 7029 3763 4781 4885 8188 8188 -0.003517315621365924 DYLTRYEHF 9 Unmodified _DYLTRYEHF_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.1963806152344 3 415.196256 1242.56694 0.21876 9.0828E-05 -0.2492 -0.00010346 -0.030436 -1.2637E-05 415.19588300943224 50.021 0.22861 50.021 49.905 50.134 0 15 10 2 0 0 0 0.2546 1 27561 27561 19.362 5.7471 1 5411000 7030 7005 4782 4886 8189 8189 -0.04464363879014854 DYLTRYEHF 9 Unmodified _DYLTRYEHF_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.196044921875 3 415.196256 1242.56694 0.86955 0.00036103 -0.14762 -6.129E-05 0.72193 0.00029974 415.1959570279844 50.593 0.24657 50.18 50.051 50.298 -0.41351 22 11 3 0 0 0 0.44883 1 27244 27244 10.151 3.9587 1 2763000 7031 7005 4782 4886 8190 8190 -0.04464363879014854 DYLYFRKLY 9 Unmodified _DYLYFRKLY_ 0 0 0 REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.5599670410156 3 427.560646 1279.66011 0.49847 0.00021313 -0.88101 -0.00037669 -0.38255 -0.00016356 427.5602175942458 62.858 0.33467 62.372 62.207 62.542 -0.48617 43 16 3 0 0 0 0.41742 2 34229 34229;34341 7.609 0 1 29209000 + 7032 20258 4783 4887 8191;8192 8191 0.03146560574236901 DYLYFRKLY 9 Unmodified _DYLYFRKLY_ 0 0 0 REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5604553222656 3 427.560646 1279.66011 0.35895 0.00015347 -0.61184 -0.0002616 -0.25288 -0.00010812 427.5603405520467 62.373 0.68052 62.341 62.14 62.82 -0.032787 123 35 5 0 0 0 0.5029 1 34132 34132 4.5289 0 1 1045899999.9999999 + 7033 20258 4783 4887 8193 8193 0.03146560574236901 DYLYFRKLY 9 Unmodified _DYLYFRKLY_ 0 0 0 REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF REV__ENST00000531200.1_1_11:102398162-102401431:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 427.560646 1279.66011 0.49847 0.00021313 -0.88101 -0.00037669 -0.38255 -0.00016356 427.5602175942458 62.858 0.33467 62.372 62.207 62.542 -0.48617 0.015513 -0.00027257 NaN 7.609 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 29209000 + 7034 20258 4783 4887 0.03146560574236901 DYLYNSRYG 9 Unmodified _DYLYNSRYG_ 0 0 0 REV__ENSG00000205649|ENST00000673563|HTN3 REV__ENSG00000205649|ENST00000673563|HTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7621459960938 2 575.76182 1149.50909 1.113 0.00064082 0.37658 0.00021682 1.4896 0.00085764 575.7617799761586 70.683 0.32478 70.719 70.549 70.874 0.035507 26 14 3 0 0 0 0.51218 1 38920 38920 6.7232 1.4263 1 2536300 + 7035 24234 4784 4888 8194 8194 -0.05968625804416661 DYLYVFKEWKY 11 Unmodified _DYLYVFKEWKY_ 0 0 0 REV__ENSG00000125675|ENST00000620443|GRIA3 REV__ENSG00000125675|ENST00000620443|GRIA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 777.388427734375 2 777.387385 1552.76022 NaN NaN NaN NaN NaN NaN NaN 51.94 1 51.94 51.44 52.44 0 0 0 0 0.94301 1 28719 28719 0.35063 0 1 + 7036 19507 4785 4889 8195 8195 0.00594753117388791 DYMAQEDDW 9 Unmodified _DYMAQEDDW_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20221201_MKP_PDAC_01 4 586.7141723632812 2 586.713679 1171.4128 NaN NaN NaN NaN NaN NaN NaN 15.951 1 13.394 12.894 13.894 -2.557 0 0 0 0.84737 1 8229 8229 1.8442 0.19162 1 7037 4211 4786 4890 8196 8196 -0.1660456142667499 DYMKTTSNF 9 Oxidation (M) _DYM(Oxidation (M))KTTSNF_ DYM(1)KTTSNF DYM(74)KTTSNF 0 0 1 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7420654296875 2 561.742239 1121.46993 -0.18304 -0.00010282 0.10655 5.9851E-05 -0.076491 -4.2968E-05 561.742212450671 25.494 0.47424 25.494 25.221 25.695 0 73 21 5 0 0 0 0.012228 2 13008 13008;13110 74.2 59.361 1 60784000 7038 7355 4787 4891 8197;8198 8197 1268 -0.08595094150291516 DYMKTTSNF 9 Unmodified _DYMKTTSNF_ 0 0 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7446899414062 2 553.744782 1105.47501 0.53766 0.00029773 -0.48647 -0.00026938 0.051188 2.8345E-05 553.7446357506124 36.018 0.23528 36.018 35.878 36.113 0 25 11 3 0 0 0 0.039985 1 19095 19095 49.933 29.062 1 12170000 7039 7355 4787 4892 8199 8199 -0.07350790287682685 DYMKTTSNF 9 Unmodified _DYMKTTSNF_ 0 0 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.746826171875 2 553.744782 1105.47501 1.1965 0.00066258 -0.55909 -0.00030959 0.63745 0.00035299 553.7445239091637 41.959 0.52094 37.274 37 37.521 -4.6846 126 32 5 0 0 0 0.0048194 3 25118 25118;25255;25389 117.76 90.877 1 366120000 7040 7355 4787 4892 8200;8201;8202 8200 -0.07350790287682685 DYMNLLGMIF 10 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ DYM(1)NLLGM(1)IF DYM(64)NLLGM(64)IF 0 0 2 ENSG00000105583|ENST00000596731|WDR83OS ENSG00000105583|ENST00000596731|WDR83OS ENSG00000105583|ENST00000596731|WDR83OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.78759765625 2 624.785592 1247.55663 2.685 0.0016775 2.5028 0.0015637 5.1878 0.0032413 624.7871087055736 99.941 0.21829 99.905 99.799 100.02 -0.036301 24 7 4 0 0 0 0.038363 1 55507 55507 63.961 37.692 1 6033000 7041 2338 4788 4893 8203 8203 404;405 -0.05724430920076884 DYMNLLGMIF 10 2 Oxidation (M) _DYM(Oxidation (M))NLLGM(Oxidation (M))IF_ 0 0 2 ENSG00000105583|ENST00000596731|WDR83OS ENSG00000105583|ENST00000596731|WDR83OS ENSG00000105583|ENST00000596731|WDR83OS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 624.785592 1247.55663 0.23704 0.0001481 0.92578 0.00057841 1.1628 0.00072651 625.2882707658516 99.988 0.14465 99.83 99.757 99.901 -0.1575 -0.037304 -0.0016403 NaN 63.961 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 449850 7042 2338 4788 4893 404;405 -0.05724430920076884 DYMQCAEDHQ 10 Unmodified _DYMQCAEDHQ_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8176574707031 3 413.818351 1238.43322 -0.51639 -0.00021369 -0.3537 -0.00014637 -0.87009 -0.00036006 413.8178518364314 56.048 0.22769 56.048 55.934 56.162 0 23 10 3 0 0 0 0.71123 1 31154 31154 0.69767 0 1 3938800 7043 7643 4789 4894 8204 8204 -0.17645714038530969 DYNFVFTSF 9 Unmodified _DYNFVFTSF_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2559814453125 2 570.25584 1138.49713 0.34943 0.00019927 0.30282 0.00017269 0.65225 0.00037195 570.2559545496066 96.349 0.32154 96.349 96.22 96.542 0 67 26 3 0 0 0 0.36964 2 53294 53200;53294 13.906 8.6092 1 1396600 7044 3715 4790 4895 8205;8206 8206 -0.06658242547609916 DYNFVFTSF 9 Unmodified _DYNFVFTSF_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2562255859375 2 570.25584 1138.49713 0.53026 0.00030238 -0.040827 -2.3282E-05 0.48943 0.0002791 570.2557254850004 96.849 0.50854 96.544 96.316 96.824 -0.30473 107 29 5 0 0 0 0.018301 2 52836 52836;52940 65.235 42.499 1 21938000 7045 3715 4790 4895 8207;8208 8207 -0.06658242547609916 DYNFVFTSF 9 Unmodified _DYNFVFTSF_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2566528320312 2 570.25584 1138.49713 1.0227 0.00058323 -0.26253 -0.00014971 0.76022 0.00043352 570.2555765236909 100.5 0.20242 94.326 94.215 94.418 -6.1757 44 12 5 0 0 0 0.06294 1 67194 67194 41.84 23.693 1 625570000 7046 3715 4790 4895 8209 8209 -0.06658242547609916 DYNNLWRTI 9 Unmodified _DYNNLWRTI_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7996826171875 2 597.798737 1193.58292 -0.034997 -2.0921E-05 -0.77831 -0.00046527 -0.81331 -0.00048619 597.7985552842987 69.555 0.18433 69.076 68.997 69.182 -0.47903 13 7 2 0 0 0 0.2546 1 38035 38035 19.362 9.9788 1 1115900 7047 9736 4791 4896 8210 8210 -0.0061265764209110785 DYNPKERVLY 10 Unmodified _DYNPKERVLY_ 0 0 0 nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.8346557617188 2 648.832777 1295.651 0.54562 0.00035402 2.5145 0.0016315 3.0601 0.0019855 648.8339222006363 60.458 0.18596 60.415 60.29 60.476 -0.04351 13 8 2 0 0 0 0.29752 1 32977 32977 27.629 0 1 4138900 7048 9385 4792 4897 8211 8211 0.015001672179096204 DYNWDWTL 8 Unmodified _DYNWDWTL_ 0 0 0 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7369995117188 2 556.737814 1111.46108 NaN NaN NaN NaN NaN NaN NaN 61.276 1 61.276 60.776 61.776 0 0 0 0 0.97444 1 34167 34167 2.8892 0 1 7049 7741 4793 4898 8212 8212 -0.090196997244675 DYNWYYDF 8 Unmodified _DYNWYYDF_ 0 0 0 ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.2296142578125 2 593.229822 1184.44509 -0.47125 -0.00027956 0.51798 0.00030728 0.046733 2.7724E-05 593.2302492538934 53.641 0.44226 53.577 53.463 53.905 -0.063423 91 28 4 0 0 0 0.80311 1 29079 29079 4.756 0.81161 1 62607000 7050 13195 4794 4899 8213 8213 -0.1397540596140061 DYNWYYDF 8 Unmodified _DYNWYYDF_ 0 0 0 ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2312622070312 2 593.229822 1184.44509 0.67238 0.00039888 0.82959 0.00049214 1.502 0.00089102 593.2304094244431 59.776 0.88915 53.662 53.452 54.341 -6.1147 135 48 4 0 0 0 0.80676 1 38438 38438 2.5775 2.5775 1 201050000 7051 13195 4794 4899 8214 8214 -0.1397540596140061 DYNWYYDF 8 Unmodified _DYNWYYDF_ 0 0 0 ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF ENST00000427574.6_1_11:76157982-76207767:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2308959960938 2 593.229822 1184.44509 0.80493 0.00047751 1.0263 0.00060885 1.8313 0.0010864 593.2302591822498 63.58 0.95471 57.404 56.98 57.935 -6.1757 101 53 3 0 0 0 0.77907 3 41153 40868;41153;41284 10.183 4.4515 1 38593000 7052 13195 4794 4899 8215;8216;8217 8216 -0.1397540596140061 DYNYKHKL 8 Unmodified _DYNYKHKL_ 0 0 0 REV__nc|ENSG00000096080|Q9NVS2-3|MRPS18A REV__nc|ENSG00000096080|Q9NVS2-3|MRPS18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8539428710938 3 360.853941 1079.53999 1.5425 0.00055661 0.099099 3.576E-05 1.6416 0.00059237 360.8538452142846 32.601 0.29825 28.745 28.516 28.814 -3.8562 22 15 2 0 0 0 0.80232 1 18623 18623 3.5965 1.098 1 5658000 + 7053 17957 4795 4900 8218 8218 0.003405723004561878 DYPNIQHLL 9 Unmodified _DYPNIQHLL_ 0 0 0 nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF nc|ENSG00000185920|Q13635-4|PTCH1 nc|ENSG00000185920|Q13635-4|PTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7922973632812 2 556.790381 1111.56621 0.29607 0.00016485 1.5709 0.00087464 1.8669 0.0010395 556.7914160473241 69.179 0.55296 68.699 68.465 69.018 -0.48071 50 23 3 0 0 0 0.37804 1 37886 37886 13.508 4.1604 1 3215200 7054 9429 4796 4901 8219 8219 0.01488841471973501 DYPNIQHLL 9 Unmodified _DYPNIQHLL_ 0 0 0 nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;ENST00000375290.6_3_9:98215758-98232201:-|nuORF nc|ENSG00000185920|Q13635-4|PTCH1 nc|ENSG00000185920|Q13635-4|PTCH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.790381 1111.56621 0.56213 0.00031299 1.2678 0.00070588 1.8299 0.0010189 556.7911861130386 68.767 0.20393 68.767 68.634 68.838 0 0.033997 -0.00026253 NaN 13.508 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 420340 7055 9429 4796 4901 0.01488841471973501 DYPPDRVTLF 10 Unmodified _DYPPDRVTLF_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8081665039062 2 611.808771 1221.60299 0.349 0.00021352 -0.76244 -0.00046647 -0.41344 -0.00025295 611.8082320031921 58.707 0.23903 58.217 58.09 58.329 -0.49079 19 11 2 0 0 0 0.67459 1 31909 31909 5.7319 0.50118 1 3517600 7056 2424 4797 4902 8220 8220 0.0010509329786145827 DYPRYLFEI 9 Unmodified _DYPRYLFEI_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.3077392578125 2 608.305864 1214.59717 0.0041172 2.5045E-06 0.95591 0.00058149 0.96003 0.00058399 608.3062082871566 84.548 0.29168 84.548 84.395 84.687 0 30 13 3 0 0 0 0.27545 2 46829 46829;46921 18.373 9.7798 1 1294200 7057 359 4798 4903 8221;8222 8221 -0.0015400521381252474 DYPRYLFEI 9 Unmodified _DYPRYLFEI_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3054809570312 2 608.305864 1214.59717 0.51719 0.00031461 -0.89358 -0.00054357 -0.37639 -0.00022896 608.3053037808545 85.026 0.42406 84.525 84.276 84.7 -0.5015 63 20 4 0 0 0 0.053952 2 46522 46428;46522 43.982 23.567 1 15250000 7058 359 4798 4903 8223;8224 8224 -0.0015400521381252474 DYPRYLFEI 9 Unmodified _DYPRYLFEI_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3065185546875 2 608.305864 1214.59717 1.1986 0.00072909 0.65041 0.00039565 1.849 0.0011247 608.3060868341423 98.144 0.31949 91.968 91.8 92.12 -6.1757 53 20 4 0 0 0 0.11005 1 64985 64985 32.037 15.888 1 108710000 7059 359 4798 4903 8225 8225 -0.0015400521381252474 DYPSKMEYF 9 Unmodified _DYPSKMEYF_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2554931640625 2 590.254982 1178.49541 0.98185 0.00057954 -0.056103 -3.3115E-05 0.92575 0.00054643 590.2549135603523 59.31 0.32784 53.235 53.03 53.358 -6.0745 30 18 2 0 0 0 0.06294 2 38129 37993;38129 41.84 21.386 1 27149000 7060 1361 4799 4904 8226;8227 8227 -0.0866961962788082 DYPSRWTAI 9 Unmodified _DYPSRWTAI_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.775390625 2 554.774731 1107.53491 0.75214 0.00041727 0.15647 8.6807E-05 0.90861 0.00050408 554.7749002991558 53.442 0.30298 53.442 53.263 53.566 0 28 13 3 0 0 0 0.062454 1 29609 29609 41.956 17.935 1 7219300 7061 10362 4800 4905 8228 8228 -0.014557315621459566 DYPSRWTAI 9 Unmodified _DYPSRWTAI_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.775390625 2 554.774731 1107.53491 0.50407 0.00027964 0.058931 3.2693E-05 0.563 0.00031234 554.7744374187783 54.081 0.41572 53.614 53.368 53.784 -0.46664 49 20 3 0 0 0 0.040683 2 29227 29227;29342 49.554 21.067 1 30649000 7062 10362 4800 4905 8229;8230 8229 -0.014557315621459566 DYPSRWTAI 9 Unmodified _DYPSRWTAI_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7747802734375 2 554.774731 1107.53491 1.0313 0.00057213 2.0152 0.001118 3.0465 0.0016901 554.7749053842368 60.326 0.53445 54.211 53.943 54.478 -6.1147 66 27 3 0 0 0 0.040683 2 38724 38724;38851 49.554 25.534 1 157440000 7063 10362 4800 4905 8231;8232 8231 -0.014557315621459566 DYPWPRQCCF 10 Unmodified _DYPWPRQCCF_ 0 0 0 UPK1B|p.V192F|1|0.16|ENSG00000114638|chr3:119194324-119194324|G/T|missense_variant UPK1B|p.V192F|1|0.16|ENSG00000114638|chr3:119194324-119194324|G/T|missense_variant UPK1B|p.V192F|1|0.16|ENSG00000114638|chr3:119194324-119194324|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.2771606445312 2 657.773351 1313.53215 0.92128 0.00060599 0.65641 0.00043177 1.5777 0.0010378 658.2755617341176 80.567 0.21941 80.074 79.906 80.126 -0.49247 14 8 2 0 0 0 0.71123 1 44126 44126 1.6526 0 1 333260 7064 30207 4801 4906 8233 8233 -0.11207646282946371 DYPYERILR 9 Unmodified _DYPYERILR_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF;ENST00000505192.5_1_3:128598473-128627108:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MSMS AL20221201_MKP_PDAC_01 4 612.8263549804688 2 612.822212 1223.62987 NaN NaN NaN NaN NaN NaN NaN 100.11 1 93.939 93.439 94.439 -6.1757 0 0 0 0.67877 1 66877 66877 10.074 0 1 7065 8697 4802 4907 8234 8234 0.027002019090332396 DYQRFQLC 8 Unmodified _DYQRFQLC_ 0 0 0 REV__ENST00000514372.5_3_4:42412314-42412431:-|nuORF REV__ENST00000514372.5_3_4:42412314-42412431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.1672058105469 3 358.167531 1071.48076 0.086673 3.1043E-05 -0.51712 -0.00018521 -0.43044 -0.00015417 358.1672959074175 80.034 0.38647 80.034 79.864 80.251 0 42 20 3 0 0 0 0.80383 1 44424 44424 2.9952 0 1 2292500 + 7066 28193 4803 4908 8235 8235 -0.05211646985344487 DYRAEYPNL 9 Unmodified _DYRAEYPNL_ 0 0 0 REV__ENST00000447467.6_1_7:95726813-95727326:+|nuORF REV__ENST00000447467.6_1_7:95726813-95727326:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7688598632812 2 570.769645 1139.52474 0.055961 3.1941E-05 -0.39433 -0.00022507 -0.33837 -0.00019313 570.7689921828845 48.321 0.22033 48.321 48.193 48.413 0 15 10 2 0 0 0 0.1773 1 26520 26520 25.399 1.3787 1 3355800 + 7067 27163 4804 4909 8236 8236 -0.03944339287386356 DYRGEERPAF 10 Unmodified _DYRGEERPAF_ 0 0 0 REV__nc|ENSG00000188807|Q5SNT2-2|TMEM201 REV__nc|ENSG00000188807|Q5SNT2-2|TMEM201 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8626403808594 3 413.863276 1238.568 -0.498 -0.0002061 0.62923 0.00026041 0.13123 5.4311E-05 413.86305909798597 20.566 0.14148 20.566 20.504 20.646 0 15 10 2 0 0 0 0.71276 1 10347 10347 0.62683 0.12087 1 457520 + 7068 23732 4805 4910 8237 8237 -0.04174149510095049 DYRIPKAML 9 Unmodified _DYRIPKAML_ 0 0 0 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.2999267578125 2 553.804977 1105.5954 0.6764 0.00037459 1.5932 0.00088232 2.2696 0.0012569 554.3079802578724 58.635 0.46564 58.574 58.394 58.86 -0.060719 45 23 3 0 0 0 0.43463 1 32086 32086 10.824 3.5347 1 2826900 7069 10343 4806 4911 8238 8238 0.046826624965888186 DYRKQILK 8 Unmodified _DYRKQILK_ 0 0 0 REV__ENSG00000236699|ENST00000420470|ARHGEF38 REV__ENSG00000236699|ENST00000420470|ARHGEF38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3165283203125 2 532.316566 1062.61858 NaN NaN NaN NaN NaN NaN NaN 103.53 1 103.48 102.98 103.98 -0.047928 0 0 0 0.97444 1 57498 57498 0.69038 0 1 + 7070 24426 4807 4912 8239 8239 0.0897742460556401 DYRWNNDRKE 10 Unmodified _DYRWNNDRKE_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.323486328125 2 698.323639 1394.63273 NaN NaN NaN NaN NaN NaN NaN 93.051 1 92.594 92.094 93.094 -0.4574 0 0 0 1.0019 1 50855 50855 0.45834 0 1 + 7071 20948 4808 4913 8240 8240 -0.04880574704134233 DYRYASVWS 9 Unmodified _DYRYASVWS_ 0 0 0 ENST00000396655.6_1_12:4758292-4777674:+|nuORF ENST00000396655.6_1_12:4758292-4777674:+|nuORF ENST00000396655.6_1_12:4758292-4777674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7633056640625 2 573.764363 1145.51417 0.18411 0.00010563 0.23312 0.00013376 0.41723 0.00023939 573.7644268227676 76.673 0.32565 76.723 76.544 76.869 0.05011 34 13 3 0 0 0 0.094149 1 42275 42275 34.402 11.665 1 6229700 7072 12802 4809 4914 8241 8241 -0.052763219418238805 DYSDIVTTL 9 Unmodified _DYSDIVTTL_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7532348632812 2 513.75313 1025.49171 0.2882 0.00014806 0.13408 6.8886E-05 0.42228 0.00021695 513.7531559725124 69.419 0.33036 69.419 69.226 69.557 0 26 14 2 0 0 0 0.012148 1 38664 38664 74.423 58.576 1 3608800 7073 7241;13013 4810 4915 8242 8242 -0.020019661300921143 DYSDIVTTL 9 Unmodified _DYSDIVTTL_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENSG00000164754|ENST00000297338|RAD21;ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENSG00000164754|ENST00000297338|RAD21 MSMS AL20221201_MKP_PDAC_01 4 513.7542724609375 2 513.75313 1025.49171 NaN NaN NaN NaN NaN NaN NaN 79.529 1 73.353 72.853 73.853 -6.1757 0 0 0 0.17247 1 52120 52120 34.102 21.571 1 7074 7241;13013 4810 4915 8243 8243 -0.020019661300921143 DYSGTAGDSLL 11 Unmodified _DYSGTAGDSLL_ 0 0 0 ENSG00000130720|ENST00000372338|FIBCD1 ENSG00000130720|ENST00000372338|FIBCD1 ENSG00000130720|ENST00000372338|FIBCD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7511596679688 2 549.751118 1097.48768 NaN NaN NaN NaN NaN NaN NaN 69.087 1 68.606 68.106 69.106 -0.48071 0 0 0 0.86932 1 37766 37766 8.7454 0.15213 1 7075 4246 4811 4916 8244 8244 -0.057160556237931814 DYSHYYTTI 9 Unmodified _DYSHYYTTI_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7571411132812 2 581.756204 1161.49785 NaN NaN NaN NaN NaN NaN NaN 47.671 1 47.671 47.171 48.171 0 0 0 0 0.23581 1 26110 26110 28.487 20.577 1 + 7076 167 4812 4917 8245 8245 -0.07643447898567501 DYSKKYQL 8 Unmodified _DYSKKYQL_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7724609375 2 522.771657 1043.52876 0.33688 0.00017611 0.83103 0.00043444 1.1679 0.00061055 522.7720775603215 91.168 0.33346 90.673 90.51 90.843 -0.49457 32 14 3 0 0 0 0.79669 1 49889 49889 8.5933 0 1 1134600 + 7077 17601 4813 4918 8246 8246 0.008737502063468128 DYSKLKEMI 9 Unmodified _DYSKLKEMI_ 0 0 0 REV__ZNF470|p.R124K|1|0.2|ENSG00000197016|chr19:56576800-56576800|G/A|missense_variant REV__ZNF470|p.R124K|1|0.2|ENSG00000197016|chr19:56576800-56576800|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7968139648438 2 563.794275 1125.574 1.3281 0.00074879 1.8876 0.0010642 3.2157 0.001813 563.7955127414754 20.472 0.25558 17.779 17.646 17.901 -2.693 21 12 2 0 0 0 0.2324 1 10969 10969 15.847 0 1 1945900 + 7078 30142 4814 4919 8247 8247 0.0162323267722968 DYSPYFKTI 9 Unmodified _DYSPYFKTI_ 0 0 0 ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8 ENSG00000186847|ENST00000167586|KRT14 ENSG00000186847|ENST00000167586|KRT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.279052734375 2 567.279315 1132.54408 0.43077 0.00024436 -0.0294 -1.6678E-05 0.40137 0.00022769 567.2790315153983 58.506 0.4947 58.015 57.679 58.173 -0.49079 67 23 5 0 0 0 0.022461 2 31784 31784;31890 75.761 51.971 1 15988000 + 7079 157 4815 4920 8248;8249 8248 -0.016893829964601537 DYSRIIERL 9 Unmodified _DYSRIIERL_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8843078613281 3 388.8839 1163.62987 0.21399 8.3216E-05 0.25291 9.8352E-05 0.46689 0.00018157 388.88402589722597 54.237 0.21472 53.771 53.626 53.841 -0.46664 22 10 3 0 0 0 0.43515 1 29392 29392 10.899 4.2755 1 2203800 7080 9314 4816 4921 8250 8250 0.05460201909068019 DYSSECTH 8 Unmodified _DYSSECTH_ 0 0 0 ENSG00000039600|ENST00000265007|SOX30 ENSG00000039600|ENST00000265007|SOX30 ENSG00000039600|ENST00000265007|SOX30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.1693420410156 2 471.168907 940.323261 NaN NaN NaN NaN NaN NaN NaN 27.202 1 27.202 26.702 27.702 0 0 0 0 0.97444 1 14008 14008 2.3027 0 1 7081 645 4817 4922 8251 8251 -0.14928771315385347 DYSYLRQLF 9 Unmodified _DYSYLRQLF_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E;ENST00000442216.1_2_22:38693892-38696026:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000431611.5_2_22:38689311-38696738:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8034057617188 2 602.803488 1203.59242 0.32197 0.00019408 -2.4635 -0.001485 -2.1415 -0.0012909 603.3031909661686 80.639 0.32375 80.696 80.54 80.864 0.057587 29 12 4 0 0 0 0.024882 2 44577 44563;44577 58.679 41.566 1 4946100 7082 5349;13263 4818 4923 8252;8253 8253 -0.0012288935658943956 DYTFMGIDPNF 11 Unmodified _DYTFMGIDPNF_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.28515625 2 660.284271 1318.55399 NaN NaN NaN NaN NaN NaN NaN 79.068 1 78.582 78.082 79.082 -0.48596 0 0 0 0.94165 1 43308 43308 1.3295 0 1 + 7083 18902 4819 4924 8254 8254 -0.09254563053400489 DYTFYYMAF 9 Unmodified _DYTFYYMAF_ 0 0 0 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5029296875 3 407.503809 1219.4896 -0.60704 -0.00024737 -2.9905 -0.0012186 -3.5975 -0.001466 407.8371440545164 34.95 0.20627 34.95 34.827 35.034 0 14 10 2 0 0 0 0.58466 1 18468 18468 1.1933 0 1 2667600 + 7084 23443 4820 4925 8255 8255 -0.11136718139573532 DYTGALAVF 9 Unmodified _DYTGALAVF_ 0 0 0 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.4733276367188 1 956.472374 955.465098 -0.10566 -0.00010106 0.6735 0.00064418 0.56784 0.00054312 956.4730572531528 79.098 0.43366 79.098 78.892 79.326 0 49 19 3 0 0 0 0.0083087 2 43961 43961;44061 97.075 29.731 1 4787600 7085 10919 4821 4926 8256;8257 8256 -0.014416102307677647 DYTGALAVF 9 Unmodified _DYTGALAVF_ 0 0 0 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.4722290039062 1 956.472374 955.465098 0.91014 0.00087052 -0.98463 -0.00094177 -0.074492 -7.125E-05 956.471319148597 79.706 0.41373 79.217 78.989 79.403 -0.48932 45 18 3 0 0 0 0.010877 2 43676 43574;43676 77.984 27.129 1 7386900 7086 10919 4821 4926 8258;8259 8259 -0.014416102307677647 DYTGALAVF 9 Unmodified _DYTGALAVF_ 0 0 0 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.471923828125 1 956.472374 955.465098 1.0826 0.0010355 -0.2772 -0.00026514 0.80541 0.00077035 956.4719362083285 88.29 0.53761 82.114 81.869 82.407 -6.1757 68 29 3 0 0 0 0.0083087 3 58274 58152;58274;58403 97.075 39.603 1 43155000 7087 10919 4821 4926 8260;8261;8262 8261 -0.014416102307677647 DYTGALAVF 9 Unmodified _DYTGALAVF_ 0 0 0 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 ENSG00000277150|ENST00000622749|F8A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7406616210938 2 478.739825 955.465098 1.3101 0.0006272 0.13295 6.3649E-05 1.443 0.00069084 478.73967988293134 88.311 0.40382 82.135 81.907 82.311 -6.1757 34 22 2 0 0 0 0.016184 1 58307 58307 67.344 25.249 1 15134000 7088 10919 4821 4926 8263 8263 -0.014416102307677647 DYTIGFGKF 9 Unmodified _DYTIGFGKF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2613525390625 2 524.260925 1046.5073 0.61441 0.00032211 -0.014873 -7.7976E-06 0.59953 0.00031431 524.2610199979188 68.201 0.34714 68.201 68.024 68.371 0 38 16 3 0 0 0 0.039985 2 38053 37960;38053 49.933 30.676 1 3660800 7089 4412 4822 4927 8264;8265 8265 -0.01409634822357475 DYTIGFGKF 9 Unmodified _DYTIGFGKF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2607421875 2 524.260925 1046.5073 0.21477 0.0001126 0.22406 0.00011747 0.43884 0.00023007 524.2609927947702 68.713 0.45461 68.232 68.031 68.485 -0.48071 67 20 4 0 0 0 0.015445 2 37502 37502;37608 68.081 42.681 1 102980000 7090 4412 4822 4927 8266;8267 8266 -0.01409634822357475 DYTIGFGKF 9 Unmodified _DYTIGFGKF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.26123046875 2 524.260925 1046.5073 0.42192 0.0002212 0.39859 0.00020896 0.8205 0.00043016 524.2610597731424 68.264 0.33078 68.289 68.127 68.458 0.025154 52 16 4 0 0 0 0.039985 2 37458 37458;37568 49.933 30.494 1 34400000 7091 4412 4822 4927 8268;8269 8268 -0.01409634822357475 DYTIGFGKF 9 Unmodified _DYTIGFGKF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2608642578125 2 524.260925 1046.5073 0.86493 0.00045345 -0.1259 -6.6005E-05 0.73903 0.00038745 524.2609234594764 75.643 0.99694 69.467 69.044 70.041 -6.1757 140 53 4 0 0 0 0.024882 4 49278 49278;49397;49522;49647 58.679 34.576 1 79417000 7092 4412 4822 4927 8270;8271;8272;8273 8270 -0.01409634822357475 DYTILLHNI 9 Unmodified _DYTILLHNI_ 0 0 0 ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2999267578125 2 551.300581 1100.58661 0.39339 0.00021688 0.086841 4.7876E-05 0.48023 0.00026475 551.3003692230418 76.757 0.40539 76.757 76.468 76.874 0 32 16 2 0 0 0 0.094149 1 42698 42698 34.402 27.112 1 1071900 7093 1267 4823 4928 8274 8274 0.04034012131751297 DYTILLHNI 9 Unmodified _DYTILLHNI_ 0 0 0 ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3005981445312 2 551.300581 1100.58661 -0.41736 -0.00023009 0.7791 0.00042952 0.36175 0.00019943 551.3009534838528 77.279 0.4811 76.797 76.517 76.998 -0.4826 68 21 4 0 0 0 0.010818 1 42296 42296 78.149 44.047 1 11555000 7094 1267 4823 4928 8275 8275 0.04034012131751297 DYTILLHNI 9 Unmodified _DYTILLHNI_ 0 0 0 ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN ENSG00000079257|ENST00000264265|LXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3004760742188 2 551.300581 1100.58661 0.14798 8.1582E-05 -0.81474 -0.00044916 -0.66676 -0.00036758 551.3002002284483 76.797 0.43153 76.847 76.676 77.108 0.05011 29 17 2 0 0 0 0.024882 1 42379 42379 58.679 36.932 1 2646000 7095 1267 4823 4928 8276 8276 0.04034012131751297 DYTRFLSEF 9 Unmodified _DYTRFLSEF_ 0 0 0 REV__nc|ENSG00000159200|P53805-3|RCAN1 REV__nc|ENSG00000159200|P53805-3|RCAN1 MSMS AL20221201_MKP_PDAC_01 4 393.1899719238281 3 393.188989 1176.54514 NaN NaN NaN NaN NaN NaN NaN 81.691 1 75.515 75.015 76.015 -6.1757 0 0 0 0.82283 1 53635 53635 4.897 2.813 1 + 7096 21465 4824 4929 8277 8277 -0.03607168627604551 DYTTCLYFI 9 Carbamidomethyl (C) _DYTTC(Carbamidomethyl (C))LYFI_ DYTTC(1)LYFI DYTTC(60)LYFI 0 1 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.26708984375 2 598.270632 1194.52671 0.2303 0.00013778 0.62574 0.00037436 0.85604 0.00051215 598.270920450542 99.547 0.18362 93.372 93.29 93.474 -6.1757 34 11 4 0 0 0 0.023164 1 66303 66303 60.39 42.255 1 78560000 7097 1731 4825 4930 8278 8278 165 -0.06277046593800151 DYTTWTALL 9 Unmodified _DYTTWTALL_ 0 0 0 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2723388671875 2 542.27149 1082.52843 0.16712 9.0626E-05 -0.044562 -2.4165E-05 0.12256 6.6461E-05 542.2715427308882 97.299 0.37263 97.056 96.796 97.169 -0.24277 39 16 3 0 0 0 0.48152 1 53163 53163 8.5933 2.8329 1 2287000 7098 1187 4826 4931 8279 8279 -0.009536695135238915 DYTVKLWDIP 10 Unmodified _DYTVKLWDIP_ 0 0 0 ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15 ENSG00000164338|ENST00000296792|UTP15 ENSG00000164338|ENST00000296792|UTP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.220458984375 3 417.22029 1248.63904 0.014943 6.2346E-06 1.6777 0.00069998 1.6927 0.00070622 417.22096368672766 20.244 0.2963 20.255 20.111 20.407 0.010553 31 16 4 0 0 0 0.72101 1 10372 10372 0.56317 0 1 1366600 7099 7183 4827 4932 8280 8280 0.02466550474696305 DYTYLRINF 9 Unmodified _DYTYLRINF_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8067016601562 2 602.803488 1203.59242 0.17993 0.00010846 -0.17362 -0.00010466 0.0063086 3.8028E-06 602.8034942324807 62.266 0.49517 62.233 61.926 62.421 -0.032787 68 25 4 0 0 0 0.28023 1 33912 33912 18.146 4.2403 1 32261000 7100 1611 4828 4933 8281 8281 -0.0012288935658943956 DYVDMNKHF 9 Unmodified _DYVDMNKHF_ 0 0 0 ENST00000422436.5_1_2:163027491-163054158:-|nuORF ENST00000422436.5_1_2:163027491-163054158:-|nuORF ENST00000422436.5_1_2:163027491-163054158:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1744995117188 3 390.174574 1167.50189 NaN NaN NaN NaN NaN NaN NaN 24.28 1 24.28 23.78 24.78 0 0 0 0 0.82739 1 12402 12402 4.897 2.1618 1 7101 13117 4829 4934 8282 8282 -0.07515681676500208 DYVDMNKHF 9 Unmodified _DYVDMNKHF_ 0 0 0 ENST00000422436.5_1_2:163027491-163054158:-|nuORF ENST00000422436.5_1_2:163027491-163054158:-|nuORF ENST00000422436.5_1_2:163027491-163054158:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1751403808594 3 390.174574 1167.50189 -0.28767 -0.00011224 0.089908 3.508E-05 -0.19776 -7.7163E-05 390.1746357920951 20.925 0.84016 20.954 20.582 21.422 0.028357 57 40 2 0 0 0 0.58466 1 10566 10566 1.1933 0 1 1447700 7102 13117 4829 4934 8283 8283 -0.07515681676500208 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2852783203125 2 549.284931 1096.55531 0.48705 0.00026753 0.22537 0.00012379 0.71242 0.00039132 549.2850980332669 68.138 0.52489 68.138 67.914 68.439 0 69 25 5 0 0 0 0.013041 2 37919 37919;38021 71.922 45.039 1 51216000 7103 43 4830 4935 8284;8285 8284 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.284423828125 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 68.725 1 68.725 68.225 69.225 0 0 0 0 0.82739 1 38303 38303 4.3292 2.0265 1 7104 43 4830 4935 8286 8286 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.287109375 2 549.284931 1096.55531 0.33418 0.00018356 -0.40422 -0.00022203 -0.070035 -3.8469E-05 549.2846518679203 68.642 0.54214 68.161 67.943 68.485 -0.48071 68 24 5 0 0 0 0.032796 2 37444 37444;37548 53.833 33.379 1 173370000 7105 43 4830 4935 8287;8288 8287 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2847900390625 2 549.284931 1096.55531 0.46283 0.00025423 -0.45525 -0.00025006 0.0075858 4.1668E-06 549.2847129961384 68.164 0.4342 68.189 67.963 68.397 0.025154 44 21 3 0 0 0 0.013041 1 37432 37432 71.922 47.902 1 9575600 7106 43 4830 4935 8289 8289 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2865600585938 2 549.284931 1096.55531 0.82521 0.00045328 0.08263 4.5387E-05 0.90784 0.00049866 549.2850313586808 75.104 1.0317 68.928 68.416 69.448 -6.1757 135 55 3 0 0 0 0.011671 4 48926 48926;49043;49162;49288 75.761 50.176 1 103760000 7107 43 4830 4935 8290;8291;8292;8293 8290 0.010894390976773138 DYVEGLRVF 9 Unmodified _DYVEGLRVF_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.285400390625 2 549.284931 1096.55531 0.70414 0.00038677 -0.31306 -0.00017196 0.39108 0.00021482 549.2844809835256 76.138 0.91948 69.962 69.413 70.333 -6.1757 132 50 3 0 0 0 0.013041 4 49781 49533;49660;49781;49897 71.922 46.523 1 168140000 7108 43 4830 4935 8294;8295;8296;8297 8296 0.010894390976773138 DYVPPELITLF 11 Unmodified _DYVPPELITLF_ 0 0 0 ENSG00000119718|ENST00000266126|EIF2B2;ENST00000556668.1_1_14:75473249-75475888:+|nuORF ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.8497924804688 2 653.850104 1305.68566 0.602 0.00039362 -0.59252 -0.00038742 0.009475 6.1952E-06 653.8497286837144 101.9 0.15112 95.725 95.662 95.814 -6.1757 23 7 4 0 0 0 0.088819 1 68395 68395 43.772 19.752 1 53896000 7109 3463 4831 4936 8298 8298 0.045039903059887365 DYVPQVCHL 9 Carbamidomethyl (C) _DYVPQVC(Carbamidomethyl (C))HL_ DYVPQVC(1)HL DYVPQVC(48)HL 0 1 0 nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7685546875 2 565.768591 1129.52263 0.44565 0.00025214 -2.3206 -0.0013129 -1.875 -0.0010608 565.7667247850983 56.268 0.48174 50.291 49.913 50.395 -5.9769 34 27 2 0 0 0 0.042911 1 35820 35820 48.346 10.17 1 34605000 7110 6559 4832 4937 8299 8299 645 -0.03695091296845021 DYVSHLWLLY 10 Unmodified _DYVSHLWLLY_ 0 0 0 REV__ENSG00000099338|ENST00000409235|CATSPERG REV__ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8350219726562 2 654.834788 1307.65502 0.68534 0.00044879 -0.61515 -0.00040282 0.070195 4.5966E-05 654.8345699500181 78.284 0.46947 78.337 78.156 78.625 0.052452 48 19 4 0 0 0 0.38225 1 43181 43181 20.454 6.5476 1 18550000 + 7111 17975 4833 4938 8300 8300 0.013502567116347564 DYVSHLWLLY 10 Unmodified _DYVSHLWLLY_ 0 0 0 REV__ENSG00000099338|ENST00000409235|CATSPERG REV__ENSG00000099338|ENST00000409235|CATSPERG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 654.834788 1307.65502 0.24088 0.00015773 0.19981 0.00013084 0.44068 0.00028857 654.8349747093655 78.911 0.13607 78.425 78.349 78.485 -0.48596 0.043892 0.00097095 NaN 20.454 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 369710 + 7112 17975 4833 4938 0.013502567116347564 DYVTGLQTL 9 Unmodified _DYVTGLQTL_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2645263671875 2 505.263665 1008.51278 0.84645 0.00042768 1.2671 0.00064022 2.1135 0.0010679 505.26384095804053 73.748 0.40002 67.573 67.445 67.845 -6.1757 33 19 2 0 0 0 0.03568 1 48256 48256 52.268 19.963 1 15041000 7113 2777 4834 4939 8301 8301 0.008860439694331035 DYVVPIVPG 9 Unmodified _DYVVPIVPG_ 0 0 0 REV__ENSG00000179914|ENST00000326245|ITLN1 REV__ENSG00000179914|ENST00000326245|ITLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2654113769531 2 479.765843 957.517133 0.64118 0.00030762 -0.27789 -0.00013332 0.36329 0.0001743 479.7657519229186 84.367 1.0082 78.192 77.777 78.785 -6.1757 160 57 4 0 0 0 0.2001 1 55830 55830 23.148 23.148 1 458400000 + 7114 23126 4835 4940 8302 8302 0.03667553183004202 DYVYTDSLF 9 Unmodified _DYVYTDSLF_ 0 0 0 nc|ENSG00000254685|O14772|FPGT;ENSG00000254685|ENST00000370898|FPGT nc|ENSG00000254685|O14772|FPGT nc|ENSG00000254685|O14772|FPGT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7526245117188 2 561.75313 1121.49171 NaN NaN NaN NaN NaN NaN NaN 96.862 1 96.557 96.057 97.057 -0.30472 0 0 0 0.82396 1 52895 52895 4.756 0.81161 1 7115 10780 4836 4941 8303 8303 -0.06417966130084096 DYWEDVWAF 9 Unmodified _DYWEDVWAF_ 0 0 0 REV__ENSG00000154217|ENST00000581322|PITPNC1;REV__nc|ENSG00000154217|Q9UKF7-2|PITPNC1 REV__ENSG00000154217|ENST00000581322|PITPNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.757568359375 2 615.758746 1229.50294 0.68315 0.00042066 -0.15066 -9.2773E-05 0.53249 0.00032789 616.2601709203199 57.606 0.28577 57.606 57.532 57.817 0 20 14 2 0 0 0 0.54444 1 32140 32140 4.756 1.1595 1 2844600 + 7116 21213;29715 4837 4942 8304 8304 -0.10263144035957339 DYYCSALDSS 10 Unmodified _DYYCSALDSS_ 0 0 0 nc|ENSG00000211642|A0A075B6I4|IGLV10-54 nc|ENSG00000211642|A0A075B6I4|IGLV10-54 nc|ENSG00000211642|A0A075B6I4|IGLV10-54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2169189453125 2 562.216054 1122.41756 -0.20312 -0.0001142 1.2275 0.00069015 1.0244 0.00057595 562.2168957562802 41.5 0.34558 41.5 41.364 41.709 0 88 17 7 0 0 0 0.66569 1 22352 22352 6.7232 0 1 150130000 7117 16521 4838 4943 8305 8305 -0.13875677283908772 DYYDPLQDL 9 Unmodified _DYYDPLQDL_ 0 0 0 REV__nc|ENSG00000081913|O60346-2|PHLPP1 REV__nc|ENSG00000081913|O60346-2|PHLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1727600097656 3 381.173117 1140.49752 0.048489 1.8483E-05 -1.3076 -0.00049843 -1.2591 -0.00047994 381.1732026184433 63.076 0.25049 63.076 62.92 63.17 0 22 10 3 0 0 0 0.54444 1 35186 35186 2.7352 0.82882 1 1165800 + 7118 17698 4839 4944 8306 8306 -0.06710867618426164 DYYLGGLRPD 10 Unmodified _DYYLGGLRPD_ 0 0 0 nc|ENSG00000183718|Q96A61-2|TRIM52;ENST00000514805.1_1_5:180686895-180687847:-|nuORF;ENSG00000183718|ENST00000688015|TRIM52;nc|ENSG00000183718|Q96A61|TRIM52 nc|ENSG00000183718|Q96A61-2|TRIM52 nc|ENSG00000183718|Q96A61-2|TRIM52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.78515625 2 584.785296 1167.55604 0.055636 3.2535E-05 -0.13266 -7.7575E-05 -0.07702 -4.504E-05 584.785154544367 65.496 0.54338 65.012 64.77 65.314 -0.48428 94 24 5 0 0 0 0.54684 1 35762 35762 13.906 0 1 219700000 7119 9181 4840 4945 8307 8307 -0.02103766253253525 DYYPEYKLLF 10 Unmodified _DYYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.833984375 2 675.834454 1349.65436 -0.022063 -1.4911E-05 0.65946 0.00044569 0.6374 0.00043078 675.8347204599197 84.183 0.25205 84.183 84.044 84.296 0 32 12 3 0 0 0 0.67033 1 46645 46645 6.2058 3.2105 1 1137100 7120 6670 4841 4946 8308 8308 -0.006485827281039747 DYYPEYKLLF 10 Unmodified _DYYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.83447265625 2 675.834454 1349.65436 0.48645 0.00032876 -0.12081 -8.1649E-05 0.36564 0.00024711 675.8342626825394 84.667 0.45613 84.168 83.955 84.411 -0.49961 75 20 6 0 0 0 0.11824 2 46358 46261;46358 43.772 35.027 1 28107000 7121 6670 4841 4946 8309;8310 8310 -0.006485827281039747 DYYPEYKLLF 10 Unmodified _DYYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.833984375 2 675.834454 1349.65436 0.091456 6.1809E-05 -0.046112 -3.1164E-05 0.045345 3.0645E-05 675.8342675696866 84.124 0.18745 84.187 84.047 84.235 0.063171 9 7 2 0 0 0 0.06987 1 46543 46543 53.404 38.999 1 19549000 7122 6670 4841 4946 8311 8311 -0.006485827281039747 DYYPEYKLLF 10 Unmodified _DYYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8352661132812 2 675.834454 1349.65436 1.1774 0.00079571 0.16533 0.00011173 1.3427 0.00090744 675.8345265727381 96.992 0.62709 90.817 90.472 91.099 -6.1757 127 36 4 0 0 0 0.061704 3 64116 64116;64235;64361 55.235 37.1 1 195900000 7123 6670 4841 4946 8312;8313;8314 8312 -0.006485827281039747 DYYYMMSTNLE 11 Unmodified _DYYYMMSTNLE_ 0 0 0 REV__nc|ENSG00000138709|Q659C4-3|LARP1B REV__nc|ENSG00000138709|Q659C4-3|LARP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.2852172851562 2 715.286153 1428.55775 0.57918 0.00041428 -1.5987 -0.0011435 -1.0195 -0.00072927 715.2852490524002 66.215 0.31316 60.039 59.824 60.137 -6.1757 21 17 2 0 0 0 0.65108 1 43054 43054 8.7454 0 1 11145000 + 7124 20356 4842 4947 8315 8315 -0.13938261341832003 EAAAAAIGY 9 Unmodified _EAAAAAIGY_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4166259765625 1 836.414859 835.407583 0.33643 0.00028139 1.609 0.0013458 1.9455 0.0016272 836.4162665191743 38.665 0.25301 38.665 38.494 38.747 0 18 11 2 0 0 0 0.06187 1 20621 20621 42.095 7.9072 1 1533600 7125 16078 4843 4948 8316 8316 -0.01670452436337655 EAAAKVLEEY 10 Unmodified _EAAAKVLEEY_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7880859375 2 561.787504 1121.56045 NaN NaN NaN NaN NaN NaN NaN 41.326 1 41.326 40.826 41.826 0 0 0 0 0.1448 1 22276 22276 47.594 26.004 1 7126 1848 4844 4949 8317 8317 0.004536981696446674 EAAALLVNY 9 Unmodified _EAAALLVNY_ 0 0 0 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2600402832031 2 482.260925 962.507297 0.21665 0.00010448 -2.2229 -0.001072 -2.0062 -0.00096752 482.25970297238666 62.469 0.25504 62.469 62.4 62.655 0 20 14 2 0 0 0 0.06187 1 34891 34891 42.095 18.946 1 2198900 7127 2610 4845 4950 8318 8318 0.02454365177618456 EAAAVFKTL 9 Unmodified _EAAAVFKTL_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENST00000502444.1_1_4:122782546-122791468:-|nuORF ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2713012695312 2 475.271293 948.528032 0.37884 0.00018005 0.17754 8.4379E-05 0.55638 0.00026443 475.2713810325911 50.136 0.25063 50.136 50.032 50.282 0 25 11 3 0 0 0 0.0087873 1 27616 27616 103.35 76.47 1 4681100 7128 5088 4846 4951 8319 8319 0.051709555572983845 EAAAVFKTL 9 Unmodified _EAAAVFKTL_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENST00000502444.1_1_4:122782546-122791468:-|nuORF ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.270263671875 2 475.271293 948.528032 0.98414 0.00046773 -0.86658 -0.00041186 0.11755 5.5869E-05 475.27090622439414 50.511 0.24466 50.098 49.992 50.236 -0.41351 21 11 3 0 0 0 0.0094097 1 27209 27209 82.529 55.646 1 4116600 7129 5088 4846 4951 8320 8320 0.051709555572983845 EAAAVFKTL 9 Unmodified _EAAAVFKTL_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENST00000502444.1_1_4:122782546-122791468:-|nuORF ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2723693847656 2 475.271293 948.528032 0.38444 0.00018272 0.021442 1.0191E-05 0.40589 0.00019291 475.27123561620124 55.977 0.35465 50.056 49.84 50.195 -5.9211 28 20 2 0 0 0 0.0087807 1 35629 35629 106.94 74.635 1 15904000 7130 5088 4846 4951 8321 8321 0.051709555572983845 EAAAVVLQL 9 Unmodified _EAAAVVLQL_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2715759277344 2 457.271293 912.528032 0.91139 0.00041675 -1.0437 -0.00047725 -0.13229 -6.0494E-05 457.2708869344595 73.309 0.46698 73.309 73.101 73.568 0 48 24 3 0 0 0 0.010877 2 40848 40748;40848 77.984 0 1 2630400 7131 7828 4847 4952 8322;8323 8323 0.06826955557301062 EAAAVVLQL 9 Unmodified _EAAAVVLQL_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2710876464844 2 457.271293 912.528032 0.72588 0.00033192 0.090178 4.1236E-05 0.81605 0.00037316 457.27132805189086 80.603 0.4557 74.428 74.186 74.642 -6.1757 38 24 2 0 0 0 0.0090851 1 52889 52889 85.357 0 1 13392000 7132 7828 4847 4952 8324 8324 0.06826955557301062 EAADIVESL 9 Unmodified _EAADIVESL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.47314453125 1 946.472768 945.465492 -0.11141 -0.00010545 -0.17539 -0.000166 -0.2868 -0.00027145 946.4726457964844 59.576 0.2495 59.576 59.443 59.693 0 19 10 2 0 0 0 0.0090851 2 33157 33157;33264 85.357 30.583 1 4520200 7133 601 4848 4953 8325;8326 8325 -0.009422353015565932 EAADIVESL 9 Unmodified _EAADIVESL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7391662597656 2 473.740022 945.465492 0.47122 0.00022323 -1.7826 -0.00084448 -1.3114 -0.00062124 473.7392021617841 59.589 0.29275 59.589 59.423 59.716 0 30 12 3 0 0 0 0.016184 1 33194 33194 67.344 16.489 1 9887500 7134 601 4848 4953 8327 8327 -0.009422353015565932 EAADIVESL 9 Unmodified _EAADIVESL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MSMS AL20221201_MKP_PDAC_01 4 473.7389221191406 2 473.740022 945.465492 NaN NaN NaN NaN NaN NaN NaN 68.046 1 61.87 61.37 62.37 -6.1757 0 0 0 0.18753 1 44383 44383 32.305 3.8186 1 7135 601 4848 4953 8328 8328 -0.009422353015565932 EAADTVTQF 9 Unmodified _EAADTVTQF_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2301025390625 2 491.229822 980.445091 0.87376 0.00042922 -0.53658 -0.00026358 0.33718 0.00016563 491.22937267224825 48.689 0.54834 43.293 42.842 43.391 -5.3961 48 32 2 0 0 0 0.026094 1 30303 30303 57.471 23.369 1 26693000 7136 5168 4849 4954 8329 8329 -0.04591405961377859 EAAENVVTY 9 Unmodified _EAAENVVTY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2375793457031 2 498.237647 994.460741 NaN NaN NaN NaN NaN NaN NaN 37.364 1 37.364 36.864 37.864 0 0 0 0 0.01764 1 19870 19870 81.613 47.211 1 7137 5401 4850 4955 8330 8330 -0.03671119444322812 EAAENVVTY 9 Unmodified _EAAENVVTY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2361450195312 2 498.237647 994.460741 0.61231 0.00030508 -1.1996 -0.00059768 -0.58727 -0.0002926 498.23659747950904 44.139 0.33573 39.287 39.117 39.452 -4.852 33 23 2 0 0 0 0.039985 1 26832 26832 49.933 11.757 1 15279000 7138 5401 4850 4955 8331 8331 -0.03671119444322812 EAAGEVRAM 9 Unmodified _EAAGEVRAM_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2256469726562 2 467.226559 932.438566 NaN NaN NaN NaN NaN NaN NaN 21.579 1 21.579 21.079 22.079 0 0 0 0 0.36957 1 10930 10930 21.537 5.6898 1 7139 11176 4851 4956 8332 8332 -0.030356223937360483 EAAGEVRAM 9 Unmodified _EAAGEVRAM_ 0 0 0 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2265319824219 2 467.226559 932.438566 0.16936 7.9129E-05 -0.36072 -0.00016854 -0.19136 -8.9409E-05 467.2264948781785 24.688 0.36081 21.805 21.617 21.978 -2.8831 39 20 3 0 0 0 0.020973 3 13496 13356;13390;13496 62.573 14.963 1 11721000 7140 11176 4851 4956 8333;8334;8335 8335 -0.030356223937360483 EAAGEVRAM 9 Oxidation (M) _EAAGEVRAM(Oxidation (M))_ EAAGEVRAM(1) EAAGEVRAM(42) 0 0 1 ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF ENST00000256015.4_1_12:92539535-92539610:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.2257690429688 2 475.224017 948.43348 NaN NaN NaN NaN NaN NaN NaN 15.253 1 12.726 12.226 13.226 -2.5273 0 0 0 0.10759 1 7810 7810 41.84 13.353 1 7141 11176 4851 4957 8336 8336 1743 -0.04279926256356248 EAAGIPVSF 9 Unmodified _EAAGIPVSF_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 890.4600830078125 1 890.46181 889.454533 0.22578 0.00020105 -0.56235 -0.00050075 -0.33657 -0.0002997 890.4612144859439 67.648 0.2833 67.648 67.505 67.788 0 24 13 2 0 0 0 0.047196 1 37681 37681 46.021 15.796 1 4012400 7142 970 4852 4958 8337 8337 0.005384071148114344 EAAGPHEAF 9 Unmodified _EAAGPHEAF_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449;nc|ENSG00000173275|Q6P9G9-2|ZNF449;nc|ENSG00000173275|Q6P9G9-3|ZNF449 ENSG00000173275|ENST00000339249|ZNF449;nc|ENSG00000173275|Q6P9G9-3|ZNF449 nc|ENSG00000173275|Q6P9G9-3|ZNF449 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7119140625 2 464.711599 927.408646 0.039978 1.8578E-05 0.033051 1.5359E-05 0.073028 3.3937E-05 464.71164299627327 25.684 0.29054 25.684 25.528 25.819 0 27 13 3 0 0 0 0.042911 1 13148 13148 48.346 26.599 1 2359600 7143 8310;16390 4853 4959 8338 8338 -0.057962380674212 EAAHIINAM 9 Oxidation (M) _EAAHIINAM(Oxidation (M))_ EAAHIINAM(1) EAAHIINAM(74) 0 0 1 nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2417602539062 2 493.242209 984.469866 -0.3253 -0.00016045 0.5907 0.00029136 0.2654 0.00013091 493.2421381334379 24.766 0.21467 24.766 24.65 24.864 0 23 10 3 0 0 0 0.012148 1 12664 12664 74.423 40.32 1 1216400 7144 3056 4854 4960 8339 8339 529 -0.022990493596466877 EAAHIINAM 9 Unmodified _EAAHIINAM_ 0 0 0 nc|ENSG00000114670|Q8NG66-2|NEK11;nc|ENSG00000114670|Q8NG66-3|NEK11;nc|ENSG00000114670|Q8NG66-4|NEK11;ENSG00000114670|ENST00000383366|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 nc|ENSG00000114670|Q8NG66-2|NEK11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2453002929688 2 485.244752 968.474951 0.72972 0.00035409 0.40898 0.00019845 1.1387 0.00055255 485.2449032961904 43.486 0.3401 38.721 38.595 38.935 -4.7648 37 21 2 0 0 0 0.0095811 2 26518 26391;26518 81.613 29.052 1 13595000 7145 3056 4854 4961 8340;8341 8341 -0.01054745497026488 EAAHLLNDAL 10 Unmodified _EAAHLLNDAL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7807006835938 2 533.780013 1065.54547 0.6776 0.00036169 0.58371 0.00031158 1.2613 0.00067327 533.7800213122802 49.52 0.27729 49.52 49.393 49.671 0 28 11 4 0 0 0 0.027759 1 27247 27247 69.105 32.978 1 7561900 7146 4907 4855 4962 8342 8342 0.015322510922715082 EAAHLLNDAL 10 Unmodified _EAAHLLNDAL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7784423828125 2 533.780013 1065.54547 0.083229 4.4426E-05 -0.98111 -0.0005237 -0.89788 -0.00047927 533.7794617097069 56.107 0.23611 50.13 49.985 50.221 -5.9769 17 13 2 0 0 0 0.11824 1 35822 35822 43.772 16.144 1 22500000 7147 4907 4855 4962 8343 8343 0.015322510922715082 EAAIAVEKY 9 Unmodified _EAAIAVEKY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3084716796875 2 497.266207 992.517862 -0.46113 -0.0002293 1.0814 0.00053773 0.62024 0.00030842 497.26657189177786 34.236 0.19055 34.236 34.175 34.365 0 14 9 3 0 0 0 0.04771 1 18020 18020 41.956 11.319 1 5984200 7148 7704 4856 4963 8344 8344 0.02130347832053303 EAAIYYHRV 9 Unmodified _EAAIYYHRV_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2922973632812 2 561.290548 1120.56654 1.1941 0.00067023 -0.14461 -8.1169E-05 1.0495 0.00058907 561.2905186614747 60.357 0.49443 54.242 53.983 54.478 -6.1147 63 25 3 0 0 0 0.41742 1 38863 38863 11.64 0.81637 1 58930000 + 7149 17227 4857 4964 8345 8345 0.011082611918027396 EAAKGTLTY 9 Unmodified _EAAKGTLTY_ 0 0 0 nc|ENSG00000118515|O00141|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000367857.9_1_6:134495759-134495951:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF nc|ENSG00000118515|O00141|SGK1 nc|ENSG00000118515|O00141|SGK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2511901855469 2 477.250557 952.486562 -0.29328 -0.00013997 -0.19633 -9.3697E-05 -0.48961 -0.00023367 477.2503777538043 25.783 0.24984 25.783 25.654 25.904 0 21 11 2 0 0 0 0.08691 1 13208 13208 36.127 9.2434 1 2448100 7150 16151 4858 4965 8346 8346 0.008417747979365231 EAAKVGEVY 9 Unmodified _EAAKVGEVY_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2503662109375 2 483.250557 964.486562 -0.35545 -0.00017177 0.032576 1.5742E-05 -0.32288 -0.00015603 483.25047668530306 26.648 0.35522 26.648 26.448 26.803 0 57 16 5 0 0 0 0.07087 2 13652 13652;13753 39.95 13.948 1 38241000 7151 4360 4859 4966 8347;8348 8347 0.0028977479796594707 EAAKVGEVY 9 Unmodified _EAAKVGEVY_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2502746582031 2 483.250557 964.486562 NaN NaN NaN NaN NaN NaN NaN 26.527 1 26.554 26.054 27.054 0.026951 0 0 0 0.22437 1 13761 13761 29.082 8.628 1 7152 4360 4859 4966 8349 8349 0.0028977479796594707 EAAKVGEVY 9 Unmodified _EAAKVGEVY_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1 nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2498779296875 2 483.250557 964.486562 0.90586 0.00043776 -0.27006 -0.00013051 0.6358 0.00030725 483.25036337616916 30.288 0.43692 26.791 26.572 27.009 -3.497 66 21 5 0 0 0 0.010301 2 17022 17022;17136 79.596 31.711 1 86055000 7153 4360 4859 4966 8350;8351 8350 0.0028977479796594707 EAANTMVNY 9 Oxidation (M) _EAANTM(Oxidation (M))VNY_ EAANTM(1)VNY EAANTM(48)VNY 0 0 1 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7212524414062 2 514.721307 1027.42806 -0.36247 -0.00018657 -0.47712 -0.00024558 -0.83959 -0.00043215 514.72116600192 26.456 0.40771 26.456 26.228 26.636 0 55 19 4 0 0 0 0.042911 1 13625 13625 48.346 31.404 1 5900000 7154 443 4860 4967 8352 8352 58 -0.08455649838833779 EAANTMVNY 9 Oxidation (M) _EAANTM(Oxidation (M))VNY_ EAANTM(1)VNY EAANTM(52)VNY 0 0 1 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7222290039062 2 514.721307 1027.42806 0.89944 0.00046296 1.6151 0.00083132 2.5145 0.0012943 514.7219030637345 30.894 0.15419 27.398 27.321 27.475 -3.497 10 6 2 0 0 0 0.03568 1 17477 17477 52.268 24.095 1 18339000 7155 443 4860 4967 8353 8353 58 -0.08455649838833779 EAANTMVNY 9 Unmodified _EAANTMVNY_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.72412109375 2 506.723849 1011.43315 0.94603 0.00047938 0.39934 0.00020235 1.3454 0.00068173 506.72419597895464 42.787 0.38798 38.103 37.902 38.29 -4.6846 57 24 3 0 0 0 0.022193 1 25844 25844 61.357 38.209 1 39802000 7156 443 4860 4968 8354 8354 -0.07211345976213579 EAAPHDIGY 9 Unmodified _EAAPHDIGY_ 0 0 0 ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK;ENST00000472519.5_1_2:71300598-71303116:+|nuORF ENSG00000124357|ENST00000244204|NAGK ENSG00000124357|ENST00000244204|NAGK MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7252502441406 2 486.724707 971.43486 0.93689 0.00045601 -0.17037 -8.2921E-05 0.76652 0.00037309 486.72477731766406 32.121 0.33163 28.425 28.246 28.578 -3.6958 35 18 2 0 0 0 0.023164 2 18215 18215;18346 60.39 22.416 1 33065000 7157 3780 4861 4969 8355;8356 8355 -0.051999688959540435 EAAPPGELY 9 Unmodified _EAAPPGELY_ 0 0 0 nc|ENSG00000149929|Q9BW71-2|HIRIP3;ENSG00000149929|ENST00000279392|HIRIP3 nc|ENSG00000149929|Q9BW71-2|HIRIP3 nc|ENSG00000149929|Q9BW71-2|HIRIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4526977539062 1 946.451639 945.444362 -0.60687 -0.00057437 1.5494 0.0014664 0.94254 0.00089207 946.453450203305 41.955 0.5352 41.955 41.626 42.161 0 42 27 2 0 0 0 0.07916 1 22543 22543 37.974 12.575 1 2503900 7158 6044 4862 4970 8357 8357 -0.030542006104269603 EAAPPGELY 9 Unmodified _EAAPPGELY_ 0 0 0 nc|ENSG00000149929|Q9BW71-2|HIRIP3;ENSG00000149929|ENST00000279392|HIRIP3 nc|ENSG00000149929|Q9BW71-2|HIRIP3 nc|ENSG00000149929|Q9BW71-2|HIRIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7295227050781 2 473.729458 945.444362 -0.016434 -7.7854E-06 1.1678 0.00055321 1.1514 0.00054543 473.7298699159585 41.897 0.51798 41.897 41.607 42.125 0 43 26 2 0 0 0 0.16226 1 22584 22584 26.884 9.9414 1 4721300 7159 6044 4862 4970 8358 8358 -0.030542006104269603 EAAQQRPR 8 Unmodified _EAAQQRPR_ 0 0 0 ENSG00000006638|ENST00000375190|TBXA2R;nc|ENSG00000006638|P21731-2|TBXA2R ENSG00000006638|ENST00000375190|TBXA2R ENSG00000006638|ENST00000375190|TBXA2R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2582702636719 2 478.25704 954.499526 NaN NaN NaN NaN NaN NaN NaN 34.321 1 34.349 33.849 34.849 0.027401 0 0 0 0.90769 1 18090 18090 18.135 4.6271 1 7160 343 4863 4971 8359 8359 0.020456507007111213 EAARLEYDAY 10 Unmodified _EAARLEYDAY_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7804565429688 2 600.78021 1199.54587 -0.094043 -5.6499E-05 -0.3511 -0.00021093 -0.44514 -0.00026743 600.7800378465995 37.532 0.50995 37.532 37.296 37.806 0 81 26 4 0 0 0 0.010233 2 20034 19919;20034 87.258 49.083 1 107490000 7161 4380 4864 4972 8360;8361 8361 -0.045923739784939244 EAARLEYDAY 10 Unmodified _EAARLEYDAY_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7807006835938 2 600.78021 1199.54587 0.16639 9.9963E-05 0.45573 0.00027379 0.62212 0.00037376 600.7805255482134 42.91 0.48974 38.225 38.009 38.499 -4.6846 97 31 4 0 0 0 0.035244 2 26032 25891;26032 65.474 34.205 1 133600000 7162 4380 4864 4972 8362;8363 8363 -0.045923739784939244 EAARLIEMY 9 Oxidation (M) _EAARLIEM(Oxidation (M))Y_ EAARLIEM(1)Y EAARLIEM(46)Y 0 0 1 ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-3|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX ENSG00000088826|ENST00000305958|SMOX ENSG00000088826|ENST00000305958|SMOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2758178710938 2 556.276249 1110.53795 0.35265 0.00019617 -0.76189 -0.00042382 -0.40924 -0.00022765 556.27555080882 40.115 0.2259 40.115 40.01 40.236 0 23 10 3 0 0 0 0.047714 1 21540 21540 45.74 30.902 1 5075500 7163 1497 4865 4973 8364 8364 256 -0.012902244996212175 EAARLIEMY 9 Unmodified _EAARLIEMY_ 0 0 0 ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-3|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX;nc|ENSG00000088826|Q9NWM0-2|SMOX;nc|ENSG00000088826|Q9NWM0-4|SMOX ENSG00000088826|ENST00000305958|SMOX ENSG00000088826|ENST00000305958|SMOX MSMS AL20221201_MKP_PDAC_01 4 548.279052734375 2 548.278792 1094.54303 NaN NaN NaN NaN NaN NaN NaN 58.402 1 52.327 51.827 52.827 -6.0745 0 0 0 0.026638 1 37416 37416 70.332 44.933 1 7164 1497 4865 4974 8365 8365 -0.0004592063701238658 EAARPLLAL 9 Unmodified _EAARPLLAL_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2920532226562 2 477.292559 952.570566 NaN NaN NaN NaN NaN NaN NaN 60.537 1 60.048 59.548 60.548 -0.48932 0 0 0 0.074615 1 32967 32967 49.933 9.9757 1 7165 9344 4866 4975 8366 8366 0.09238350685518526 EAARSPAVL 9 Unmodified _EAARSPAVL_ 0 0 0 ENST00000263401.9_1_11:36295935-36296034:-|nuORF ENST00000263401.9_1_11:36295935-36296034:-|nuORF ENST00000263401.9_1_11:36295935-36296034:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2588500976562 2 457.258717 912.50288 0.2955 0.00013512 -0.70532 -0.00032251 -0.40982 -0.00018739 457.2583122147601 31.075 0.28262 31.075 30.912 31.194 0 21 13 2 0 0 0 0.044011 1 16162 16162 47.749 0 1 2082800 7166 11291 4867 4976 8367 8367 0.04312900754723614 EAARVMHR 8 Unmodified _EAARVMHR_ 0 0 0 ENST00000588712.5_1_18:56055929-56056193:+|nuORF ENST00000588712.5_1_18:56055929-56056193:+|nuORF ENST00000588712.5_1_18:56055929-56056193:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.7618103027344 2 485.255985 968.497418 1.092 0.00052992 3.9665 0.0019248 5.0586 0.0024547 485.2593532255466 32.384 0.15322 28.528 28.447 28.601 -3.8562 9 8 2 0 0 0 8.7369 1 18459 18459 21.747 0 1 6590700 7167 15654 4868 4977 8368 8368 0.011908986912544606 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4920043945312 1 934.488024 933.480748 0.43983 0.00041102 -0.35306 -0.00032993 0.086772 8.1087E-05 934.4874460444892 51.612 0.452 51.612 51.412 51.864 0 78 20 5 0 0 0 8.5836E-05 2 28437 28437;28555 153.26 89.699 1 280740000 7168 7904 4869 4978 8369;8370 8369 0.011346762862899595 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7472839355469 2 467.74765 933.480748 0.65586 0.00030678 -3.5604 -0.0016654 -2.9045 -0.0013586 467.7458692687629 51.612 0.66991 51.612 51.326 51.996 0 90 30 4 0 0 0 0.038285 1 28515 28515 50.855 27.707 1 145980000 7169 7904 4869 4978 8371 8371 0.011346762862899595 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.4883422851562 1 934.488024 933.480748 0.53148 0.00049666 1.17 0.0010933 1.7014 0.00159 934.4890114248718 52.236 0.2023 51.802 51.669 51.871 -0.43367 18 9 3 0 0 0 0.038285 1 28182 28182 50.855 26.181 1 1841900 7170 7904 4869 4978 8372 8372 0.011346762862899595 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 934.48828125 1 934.488024 933.480748 0.48103 0.00044951 0.54017 0.00050478 1.0212 0.00095429 934.4886174286636 51.884 0.24445 51.825 51.651 51.896 -0.058918 20 11 2 0 0 0 0.038285 1 28051 28051 50.855 26.181 1 2488000 7171 7904 4869 4978 8373 8373 0.011346762862899595 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 934.488525390625 1 934.488024 933.480748 0.94953 0.00088733 -0.45981 -0.00042969 0.48972 0.00045764 934.4873947860533 59.762 0.56408 53.647 53.357 53.921 -6.1147 104 31 4 0 0 0 0.0086629 4 38361 38237;38326;38361;38499 101.72 57.315 1 509380000 7172 7904 4869 4978 8374;8375;8376;8377 8376 0.011346762862899595 EAASVPVVY 9 Unmodified _EAASVPVVY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7477416992188 2 467.74765 933.480748 0.86063 0.00040256 -0.37835 -0.00017697 0.48227 0.00022558 467.7473801202568 59.753 0.52723 53.638 53.394 53.921 -6.1147 76 29 3 0 0 0 0.013472 2 38473 38325;38473 70.716 40.491 1 257190000 7173 7904 4869 4978 8378;8379 8379 0.011346762862899595 EAAVAIKAM 9 Oxidation (M) _EAAVAIKAM(Oxidation (M))_ EAAVAIKAM(1) EAAVAIKAM(71) 0 0 1 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2496643066406 2 460.249503 918.484453 0.1318 6.0659E-05 -0.36531 -0.00016813 -0.23352 -0.00010748 460.249460809654 24.098 0.34569 24.098 23.893 24.239 0 61 17 5 0 0 0 0.013323 2 12329 12237;12329 71.134 16.36 1 18935000 7174 4415 4870 4979 8380;8381 8381 808 0.021950227884985907 EAAVAIKAM 9 Oxidation (M) _EAAVAIKAM(Oxidation (M))_ EAAVAIKAM(1) EAAVAIKAM(55) 0 0 1 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2495422363281 2 460.249503 918.484453 0.11297 5.1992E-05 -0.24032 -0.00011061 -0.12735 -5.8614E-05 460.24950679819557 24.379 0.31263 24.379 24.239 24.551 0 61 18 4 0 0 0 0.031062 1 12439 12439 54.774 14.816 1 21494000 7175 4415 4870 4979 8382 8382 808 0.021950227884985907 EAAVAIKAM 9 Oxidation (M) _EAAVAIKAM(Oxidation (M))_ EAAVAIKAM(1) EAAVAIKAM(71) 0 0 1 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2506408691406 2 460.249503 918.484453 0.46543 0.00021421 0.19156 8.8164E-05 0.65699 0.00030238 460.24970999725855 27.534 0.40034 24.498 24.28 24.68 -3.0365 45 19 3 0 0 0 0.013323 2 15200 15200;15312 71.134 16.36 1 78865000 7176 4415 4870 4979 8383;8384 8383 808 0.021950227884985907 EAAVAIKAM 9 Oxidation (M) _EAAVAIKAM(Oxidation (M))_ EAAVAIKAM(1) EAAVAIKAM(71) 0 0 1 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2498168945312 2 460.249503 918.484453 0.42996 0.00019789 -0.12392 -5.7032E-05 0.30604 0.00014086 460.249523151573 27.884 0.40519 24.735 24.547 24.952 -3.1482 50 21 3 0 0 0 0.013323 2 15549 15427;15549 71.134 16.36 1 76736000 7177 4415 4870 4979 8385;8386 8386 808 0.021950227884985907 EAAVAIKAM 9 Unmodified _EAAVAIKAM_ 0 0 0 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2523498535156 2 452.252046 902.489538 0.72309 0.00032702 -0.41722 -0.00018869 0.30588 0.00013833 452.25190607438435 36.888 0.28737 36.888 36.71 36.997 0 32 13 3 0 0 0 0.047196 2 19538 19538;19640 46.021 6.0636 1 11174000 7178 4415 4870 4980 8387;8388 8387 0.034393266511074216 EAAVAIKAM 9 Unmodified _EAAVAIKAM_ 0 0 0 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2525329589844 2 452.252046 902.489538 1.6759 0.00075794 -0.75926 -0.00034338 0.91666 0.00041456 452.2517764612598 41.836 0.60656 37.228 36.894 37.5 -4.6079 139 38 5 0 0 0 0.008678 3 25268 25006;25138;25268 88.904 17.77 1 338790000 7179 4415 4870 4980 8389;8390;8391 8391 0.034393266511074216 EAAVAIKAM 9 Unmodified _EAAVAIKAM_ 0 0 0 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 903.50048828125 1 903.496815 902.489538 1.5422 0.0013934 0.30043 0.00027144 1.8427 0.0016648 903.4971290429805 41.837 0.36414 37.229 37.03 37.394 -4.6079 35 22 2 0 0 0 0.0082475 2 25113 25113;25254 92.653 23.548 1 6235900 7180 4415 4870 4980 8392;8393 8392 0.034393266511074216 EAAVSASDIL 10 Unmodified _EAAVSASDIL_ 0 0 0 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2545166015625 2 488.253297 974.492041 NaN NaN NaN NaN NaN NaN NaN 21.268 1 21.282 20.782 21.782 0.013796 0 0 0 0.94014 1 10881 10881 6.2058 0.44535 1 7181 6549 4871 4981 8394 8394 0.0037745358977190335 EACAVECRPF 10 Unmodified _EACAVECRPF_ 0 0 0 ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.201416015625 3 375.500293 1123.47905 0.0734 2.7562E-05 4.042 0.0015178 4.1154 0.0015453 375.83531494359636 37.997 0.12306 37.997 37.905 38.028 0 7 5 2 0 0 0 0.23634 1 20248 20248 3.5871 2.5156 1 436030 7182 11805 4872 4982 8395 8395 -0.07775024065631442 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.0863037109375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 3.9223 1 3.9223 3.4223 4.4223 0 0 0 0 0.97444 1 1898 1898 0 0 1 7183 16206 4873 4983 8396 8396 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.0860290527344 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 7.9946 1 7.9946 7.4946 8.4946 0 0 0 0 0.97444 1 3820 3820 0 0 1 7184 16206 4873 4983 8397 8397 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.0874633789062 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 14.157 1 14.157 13.657 14.657 0 0 0 0 0.97444 1 6712 6712 0 0 1 7185 16206 4873 4983 8398 8398 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5361938476562 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 23.859 1 23.859 23.359 24.359 0 0 0 0 0.97444 1 12174 12174 0 0 1 7186 16206 4873 4983 8399 8399 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.7058715820312 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 71.547 1 71.547 71.047 72.047 0 0 0 0 0.97444 1 39851 39851 0 0 1 7187 16206 4873 4983 8400 8400 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.8275146484375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 74.879 1 74.879 74.379 75.379 0 0 0 0 0.97444 1 41660 41660 0 0 1 7188 16206 4873 4983 8401 8401 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.0868835449219 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 12.582 1 12.517 12.017 13.017 -0.064889 0 0 0 0.97444 1 6114 6114 0 0 1 7189 16206 4873 4983 8402 8402 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.0863647460938 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 14.715 1 14.684 14.184 15.184 -0.030868 0 0 0 0.97444 1 7178 7178 0 0 1 7190 16206 4873 4983 8403 8403 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.189453125 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 16.386 1 16.387 15.887 16.887 0.0010548 0 0 0 0.97444 1 8078 8078 0 0 1 7191 16206 4873 4983 8404 8404 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.0868835449219 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 17.435 1 17.449 16.949 17.949 0.013865 0 0 0 0.97444 1 8668 8668 0 0 1 7192 16206 4873 4983 8405 8405 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5013427734375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 18.259 1 18.273 17.773 18.773 0.013865 0 0 0 0.97444 1 9141 9141 0 0 1 7193 16206 4873 4983 8406 8406 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5269470214844 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 19.292 1 19.315 18.815 19.815 0.023106 0 0 0 0.97444 1 9718 9718 0 0 1 7194 16206 4873 4983 8407 8407 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.0863037109375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 86.983 1 86.48 85.98 86.98 -0.50318 0 0 0 0.97444 1 47587 47587 0 0 1 7195 16206 4873 4983 8408 8408 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0872802734375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 2.9881 1 2.9758 2.4758 3.4758 -0.012334 0 0 0 0.97444 1 1516 1516 0 0 1 7196 16206 4873 4983 8409 8409 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0865173339844 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 5.5883 1 5.5894 5.0894 6.0894 0.0010915 0 0 0 0.97444 1 2813 2813 0 0 1 7197 16206 4873 4983 8410 8410 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0860290527344 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 7.3307 1 7.3459 6.8459 7.8459 0.015238 0 0 0 0.97444 1 3658 3658 0 0 1 7198 16206 4873 4983 8411 8411 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0858459472656 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 10.874 1 10.89 10.39 11.39 0.015327 0 0 0 0.97444 1 5368 5368 0 0 1 7199 16206 4873 4983 8412 8412 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0872192382812 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 13.69 1 13.697 13.197 14.197 0.0073986 0 0 0 0.97444 1 6754 6754 0 0 1 7200 16206 4873 4983 8413 8413 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0858459472656 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 16.999 1 17.004 16.504 17.504 0.0050564 0 0 0 0.97444 1 8553 8553 0 0 1 7201 16206 4873 4983 8414 8414 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.9071044921875 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 17.411 1 17.416 16.916 17.916 0.0050564 0 0 0 0.97444 1 8781 8781 0 0 1 7202 16206 4873 4983 8415 8415 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0868835449219 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 19.28 1 19.288 18.788 19.788 0.0078487 0 0 0 0.97444 1 9802 9802 0 0 1 7203 16206 4873 4983 8416 8416 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8746032714844 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 19.5 1 19.508 19.008 20.008 0.0078487 0 0 0 0.97444 1 9920 9920 0 0 1 7204 16206 4873 4983 8417 8417 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.0880432128906 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 0.38597 1 -2.096 -2.596 -1.596 -2.482 0 0 0 0.97444 1 204 204 0 0 1 7205 16206 4873 4983 8418 8418 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.08740234375 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 0.68045 1 -1.8015 -2.3015 -1.3015 -2.482 0 0 0 0.97444 1 358 358 0 0 1 7206 16206 4873 4983 8419 8419 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.0868835449219 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 1.5128 1 -0.96921 -1.4692 -0.4692 -2.482 0 0 0 0.97444 1 782 782 0.79363 0.79363 1 7207 16206 4873 4983 8420 8420 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.0868835449219 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 11.612 1 9.1302 8.6302 9.6302 -2.482 0 0 0 0.97444 1 5845 5845 0 0 1 7208 16206 4873 4983 8421 8421 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.0868225097656 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 13.115 1 10.633 10.133 11.133 -2.482 0 0 0 0.97444 1 6643 6643 0 0 1 7209 16206 4873 4983 8422 8422 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.0873718261719 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 13.734 1 11.231 10.731 11.731 -2.5029 0 0 0 0.97444 1 6960 6960 0 0 1 7210 16206 4873 4983 8423 8423 -0.24581483963413575 EACCCCCG 8 Unmodified _EACCCCCG_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC;ENST00000431629.5_2_7:114654517-114655986:+|nuORF;ENSG00000135272|ENST00000393486|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 396.087158203125 2 396.086105 790.157658 NaN NaN NaN NaN NaN NaN NaN 14.162 1 11.659 11.159 12.159 -2.5029 0 0 0 0.97444 1 7177 7177 0 0 1 7211 16206 4873 4983 8424 8424 -0.24581483963413575 EACGAASL 8 Unmodified _EACGAASL_ 0 0 0 ENST00000484749.5_1_1:228360905-228363211:+|nuORF;ENST00000546123.2_1_1:228362303-228363211:+|nuORF;ENSG00000181873|ENST00000366711|IBA57 ENST00000484749.5_1_1:228360905-228363211:+|nuORF ENST00000484749.5_1_1:228360905-228363211:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.8695678710938 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 38.723 1 34.272 33.772 34.772 -4.4509 0 0 0 0.97444 1 22888 22888 5.2307 2.3415 1 7212 14157 4874 4984 8425 8425 -0.060103432679397883 EACGRQYTL 9 Carbamidomethyl (C) _EAC(Carbamidomethyl (C))GRQYTL_ EAC(1)GRQYTL EAC(130)GRQYTL 0 1 0 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2568359375 2 549.255848 1096.49714 0.53854 0.00029579 -0.17866 -9.8131E-05 0.35987 0.00019766 549.2557662625283 31.751 0.36267 28.056 27.908 28.271 -3.6958 35 19 2 0 0 0 0.0025703 2 17974 17974;18109 128.93 85.074 1 47940000 7213 8363 4875 4985 8426;8427 8426 803 -0.04724565819265081 EACGVIVEL 9 Carbamidomethyl (C) _EAC(Carbamidomethyl (C))GVIVEL_ EAC(1)GVIVEL EAC(46)GVIVEL 0 1 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 989.4979858398438 1 989.497209 988.489932 0.84202 0.00083317 0.30353 0.00030034 1.1455 0.0011335 989.4973356832392 73.885 0.53413 67.71 67.53 68.064 -6.1757 54 26 3 0 0 0 0.047196 1 48274 48274 46.021 9.9768 1 14195000 7214 8541 4876 4986 8428 8428 819 -0.004772984196733887 EACGVIVEL 9 Carbamidomethyl (C) _EAC(Carbamidomethyl (C))GVIVEL_ EAC(1)GVIVEL EAC(67)GVIVEL 0 1 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2527465820312 2 495.252243 988.489932 0.93853 0.00046481 0.17208 8.5224E-05 1.1106 0.00055003 495.2524336650227 73.889 0.80717 67.714 67.445 68.252 -6.1757 60 40 2 0 0 0 0.016184 2 48305 48305;48424 67.344 22.937 1 31207000 7215 8541 4876 4986 8429;8430 8429 819 -0.004772984196733887 EACKLAAAF 9 Carbamidomethyl (C) _EAC(Carbamidomethyl (C))KLAAAF_ EAC(1)KLAAAF EAC(60)KLAAAF 0 1 0 ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1 ENST00000504745.1_1_4:113347516-113362363:+|nuORF ENST00000504745.1_1_4:113347516-113362363:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7476806640625 2 490.747127 979.479702 0.96689 0.0004745 -0.30402 -0.0001492 0.66287 0.0003253 490.74712685394536 48.43 0.4957 43.196 42.907 43.403 -5.2339 73 29 3 0 0 0 0.023481 1 30169 30169 60.074 33.19 1 84955000 7216 1103 4877 4987 8431 8431 96 -0.010858613542836792 EACRILLQY 9 Carbamidomethyl (C) _EAC(Carbamidomethyl (C))RILLQY_ EAC(1)RILLQY EAC(89)RILLQY 0 1 0 nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1 nc|ENSG00000079387|Q9P0U3-2|SENP1 nc|ENSG00000079387|Q9P0U3-2|SENP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.80859375 2 583.305341 1164.59613 1.0751 0.00062709 -0.72282 -0.00042163 0.35223 0.00020546 583.3047706392414 59.244 0.48095 53.169 52.953 53.434 -6.0745 41 26 2 0 0 0 0.0086209 2 37966 37966;38115 89.401 51.225 1 58856000 7217 1276 4878 4988 8432;8433 8432 114 0.020414571456285557 EADADRVFVY 10 Unmodified _EADADRVFVY_ 0 0 0 REV__nc|ENSG00000101605|P52179-2|MYOM1 REV__nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7839965820312 2 592.782753 1183.55095 0.50846 0.00030141 3.7683 0.0022338 4.2768 0.0025352 592.7847049263855 87.997 0.22714 87.493 87.421 87.649 -0.50423 18 9 2 0 0 0 0.60623 1 48166 48166 10.824 2.9138 1 794020 + 7218 18187 4879 4989 8434 8434 -0.03348070115907831 EADKREKAANN 11 Unmodified _EADKREKAANN_ 0 0 0 nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.8135375976562 2 623.31274 1244.61093 0.4233 0.00026385 -1.4733 -0.00091831 -1.05 -0.00065446 623.3118079250104 75.579 0.32272 75.627 75.474 75.797 0.047943 38 14 3 0 0 0 0.65846 1 41750 41750 8.1555 0 1 7015000 7219 5303 4880 4990 8435 8435 -0.0015937945265704911 EADKTIKVY 9 Unmodified _EADKTIKVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7926635742188 2 533.792589 1065.57063 -0.2218 -0.00011839 -0.37845 -0.00020201 -0.60025 -0.00032041 533.7922940771723 25.38 0.26523 25.38 25.221 25.486 0 29 12 3 0 0 0 0.0089732 1 12978 12978 86.332 48.156 1 5311900 7220 8116 4881 4991 8436 8436 0.040463058948716935 EADKTIKVY 9 Unmodified _EADKTIKVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.1972961425781 3 356.197485 1065.57063 -0.43094 -0.0001535 0.17441 6.2125E-05 -0.25653 -9.1375E-05 356.1975311063944 25.373 0.34422 25.373 25.184 25.528 0 51 16 5 0 0 0 0.43463 1 12986 12986 15.248 8.1468 1 18479000 7221 8116 4881 4991 8437 8437 0.040463058948716935 EADKTIKVY 9 Unmodified _EADKTIKVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1975708007812 3 356.197485 1065.57063 1.2893 0.00045925 -0.26862 -9.5682E-05 1.0207 0.00036357 356.19729400921585 28.313 0.44932 25.164 24.952 25.401 -3.1482 66 23 4 0 0 0 0.43463 1 15698 15698 7.1017 1.8048 1 68733000 7222 8116 4881 4991 8438 8438 0.040463058948716935 EADKTIKVY 9 Unmodified _EADKTIKVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7930908203125 2 533.792589 1065.57063 0.55412 0.00029579 -0.30327 -0.00016188 0.25085 0.0001339 533.7923277877426 28.315 0.41277 25.167 24.967 25.38 -3.1482 51 21 3 0 0 0 0.0085366 2 15724 15724;15845 90.135 51.959 1 37919000 7223 8116 4881 4991 8439;8440 8439 0.040463058948716935 EADQIIEYL 9 Unmodified _EADQIIEYL_ 0 0 0 ENSG00000164022|ENST00000672341|AIMP1;nc|ENSG00000164022|Q12904-2|AIMP1 ENSG00000164022|ENST00000672341|AIMP1 ENSG00000164022|ENST00000672341|AIMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2745971679688 2 547.274229 1092.53391 -1.0565 -0.00057821 0.9746 0.00053338 -0.081924 -4.4835E-05 547.2748870155502 32.503 0.49156 32.503 32.204 32.695 0 75 28 4 0 0 0 0.35911 1 17100 17100 10.074 3.8681 1 33412000 7224 7113 4882 4992 8441 8441 -0.008659907216951979 EADVSLPSM 9 Oxidation (M) _EADVSLPSM(Oxidation (M))_ EADVSLPSM(1) EADVSLPSM(48) 0 0 1 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7182922363281 2 482.718233 963.421912 0.7306 0.00035268 -0.14531 -7.0145E-05 0.58529 0.00028253 482.71816721442167 36.663 0.29062 36.663 36.527 36.818 0 32 13 3 0 0 0 0.042911 1 19442 19442 48.346 19.859 1 4588800 7225 9384 4883 4993 8442 8442 1544 -0.06126168070341009 EADYLLHQSYH 11 Unmodified _EADYLLHQSYH_ 0 0 0 ENST00000393085.3_1_7:135613607-135613700:-|nuORF ENST00000393085.3_1_7:135613607-135613700:-|nuORF ENST00000393085.3_1_7:135613607-135613700:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7231750488281 3 459.214086 1374.62043 0.42988 0.00019741 -3.1372 -0.0014406 -2.7073 -0.0012432 459.21235659746765 30.465 0.29046 30.384 30.255 30.546 -0.080431 14 10 2 0 0 0 0.30551 1 15883 15883 2.6312 0.19645 1 522030 7226 12693 4884 4994 8443 8443 -0.051896111671339895 EADYLLHQSYH 11 Unmodified _EADYLLHQSYH_ 0 0 0 ENST00000393085.3_1_7:135613607-135613700:-|nuORF ENST00000393085.3_1_7:135613607-135613700:-|nuORF ENST00000393085.3_1_7:135613607-135613700:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 459.214086 1374.62043 0.12352 5.6724E-05 -3.7546 -0.0017242 -3.6311 -0.0016674 459.212139607573 30.341 0.34215 30.371 30.114 30.456 0.030104 -0.0065812 -0.00055842 NaN 2.6312 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 949780 7227 12693 4884 4994 -0.051896111671339895 EAEAVVNDVLF 11 Unmodified _EAEAVVNDVLF_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3076782226562 2 603.306061 1204.59757 -0.10147 -6.122E-05 1.6553 0.00099866 1.5538 0.00093744 603.3069967226917 78.307 0.30467 78.307 78.127 78.432 0 26 13 2 0 0 0 0.30985 1 43498 43498 26.268 14.773 1 1080700 7228 1871 4885 4995 8444 8444 0.003453697153872781 EAECLDPDCE 10 Unmodified _EAECLDPDCE_ 0 0 0 REV__nc|ENSG00000188162|Q6ZRI0|OTOG REV__nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.1360778808594 3 375.135457 1122.38454 0.083529 3.1335E-05 1.9723 0.00073987 2.0558 0.0007712 375.1360904560333 63.429 0.27202 63.429 63.295 63.567 0 22 15 2 0 0 0 0.72247 1 35379 35379 0.13989 0 1 2683000 + 7229 23694 4886 4996 8445 8445 -0.17175627398296456 EAEDGIIAY 9 Unmodified _EAEDGIIAY_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.4683227539062 1 980.457118 979.449842 0.23269 0.00022814 0.54562 0.00053496 0.77831 0.0007631 980.4567666099377 50.64 0.16632 50.64 50.518 50.685 0 13 7 2 0 0 0 0.5029 1 27885 27885 7.2892 2.96 1 1446100 7230 401 4887 4997 8446 8446 -0.04070521818596262 EAEELYQKRVL 11 Unmodified _EAEELYQKRVL_ 0 0 0 nc|ENSG00000157168|Q02297-11|NRG1;nc|ENSG00000158458|O14511-7|NRG2;nc|ENSG00000157168|Q02297-6|NRG1;nc|ENSG00000157168|Q02297-2|NRG1;ATP1B1-NRG1|9|fusion;nc|ENSG00000158458|O14511-4|NRG2;nc|ENSG00000158458|O14511-3|NRG2 nc|ENSG00000157168|Q02297-11|NRG1 nc|ENSG00000157168|Q02297-11|NRG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.5842590332031 3 459.91727 1376.72998 0.36445 0.00016762 -2.9304 -0.0013478 -2.566 -0.0011801 460.24869210436634 24.286 0.24322 24.307 24.216 24.459 0.021185 13 9 2 0 0 0 0.30565 1 12546 12546 1.0136 0 1 3390300 7231 40 4888 4998 8447 8447 0.05668394452186476 EAEKLVMF 8 Unmodified _EAEKLVMF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7521667480469 2 483.751879 965.489204 NaN NaN NaN NaN NaN NaN NaN 46.337 1 46.337 45.837 46.837 0 0 0 0 0.85975 1 25323 25323 20.454 2.3186 1 7232 1685 4889 4999 8448 8448 0.005079069312500906 EAEKPVSR 8 Unmodified _EAEKPVSR_ 0 0 0 REV__ENSG00000196872|ENST00000397899|CRACDL REV__ENSG00000196872|ENST00000397899|CRACDL MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2646789550781 2 458.248349 914.482145 0.95528 0.00043776 1.3873 0.00063574 2.3426 0.0010735 458.248593958089 102.21 0.073959 96.03 95.978 96.052 -6.1757 4 2 2 0 0 0 0.79783 1 68563 68563 7.9102 0 1 4513500 + 7233 23878 4890 5000 8449 8449 0.02148310375048368 EAEKPVSR 8 Unmodified _EAEKPVSR_ 0 0 0 REV__ENSG00000196872|ENST00000397899|CRACDL REV__ENSG00000196872|ENST00000397899|CRACDL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 458.2646789550781 2 458.248349 914.482145 1.0493 0.00048084 4.046 0.0018541 5.0953 0.0023349 458.24872084996423 102.34 0.31281 96.166 95.918 96.23 -6.1757 23 17 3 0 0 0 8.7369 1 68563 68563 7.9102 0 1 10133000 + 7234 23878 4890 5000 8450 8450 0.02148310375048368 EAEKSQLIM 9 Oxidation (M) _EAEKSQLIM(Oxidation (M))_ EAEKSQLIM(1) EAEKSQLIM(100) 0 0 1 nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7691040039062 2 532.768257 1063.52196 -0.067424 -3.5921E-05 0.59178 0.00031528 0.52436 0.00027936 532.7686447826229 23.37 0.63338 23.37 22.955 23.588 0 88 31 4 0 0 0 0.0087873 2 11850 11850;11948 103.35 31.431 1 7874500 7235 4923 4891 5001 8451;8452 8451 897 -0.007259307365529821 EAEKSQLIM 9 Oxidation (M) _EAEKSQLIM(Oxidation (M))_ EAEKSQLIM(1) EAEKSQLIM(86) 0 0 1 nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7680053710938 2 532.768257 1063.52196 0.38802 0.00020673 -0.17478 -9.3118E-05 0.21324 0.00011361 532.768324376824 26.481 0.54193 23.53 23.281 23.823 -2.9511 63 28 3 0 0 0 0.0090524 2 14510 14510;14630 85.642 13.719 1 34393000 7236 4923 4891 5001 8453;8454 8453 897 -0.007259307365529821 EAEKSQLIM 9 Unmodified _EAEKSQLIM_ 0 0 0 nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 nc|ENSG00000137312|O75955-2|FLOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7713012695312 2 524.7708 1047.52705 0.9389 0.00049271 -0.3076 -0.00016142 0.6313 0.00033129 524.7707640837635 40.653 0.50097 36.123 35.889 36.39 -4.5294 81 30 3 0 0 0 0.039985 1 24342 24342 49.933 17.628 1 76658000 7237 4923 4891 5002 8455 8455 0.005183731260558488 EAELDYLMD 9 Unmodified _EAELDYLMD_ 0 0 0 ENSG00000197019|ENST00000357949|SERTAD1 ENSG00000197019|ENST00000357949|SERTAD1 ENSG00000197019|ENST00000357949|SERTAD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7898559570312 2 549.736622 1097.45869 0.35027 0.00019255 3.7721 0.0020736 4.1223 0.0022662 549.7377194693613 82.412 0.24036 82.412 82.293 82.533 0 15 9 2 0 0 0 0.21052 1 45742 45742 6.7232 1.4925 1 518020 7238 9896 4892 5003 8456 8456 -0.08613916244439679 EAELFVASVVF 11 Unmodified _EAELFVASVVF_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2162475585938 3 404.216657 1209.62814 -0.23157 -9.3606E-05 -1.0658 -0.00043083 -1.2974 -0.00052444 404.2161537992518 33.564 0.33001 33.405 33.223 33.553 -0.15918 44 13 4 0 0 0 0.54936 1 17477 17477 7.4771 0 1 11079000 7239 9668 4893 5004 8457 8457 0.03171148100409482 EAELFVASVVF 11 Unmodified _EAELFVASVVF_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2156066894531 3 404.216657 1209.62814 1.0775 0.00043555 -2.2394 -0.00090521 -1.1619 -0.00046966 404.2150947161108 36.863 0.51856 32.58 32.324 32.843 -4.2835 70 31 3 0 0 0 0.54936 1 21687 21687 10.899 0 1 50153000 7240 9668 4893 5004 8458 8458 0.03171148100409482 EAELITSFFL 10 Unmodified _EAELITSFFL_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.307861328125 2 585.308072 1168.60159 0.36348 0.00021275 2.576 0.0015078 2.9395 0.0017205 585.3090593257035 87.836 0.30969 87.332 87.101 87.411 -0.50423 19 14 2 0 0 0 0.71123 1 48056 48056 1.6526 0.85899 1 525830 + 7241 29677 4894 5005 8459 8459 0.02403459209108405 EAELITSFFL 10 Unmodified _EAELITSFFL_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 585.308072 1168.60159 0.10519 6.1569E-05 1.9336 0.0011317 2.0388 0.0011933 585.3091972484683 87.285 0.18803 87.285 87.147 87.335 0 -0.023454 -0.00023305 NaN 1.6526 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 210340 + 7242 29677 4894 5005 0.02403459209108405 EAELITSFFL 10 Unmodified _EAELITSFFL_ 0 0 0 REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-2|SETDB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.308072 1168.60159 0.36348 0.00021275 2.576 0.0015078 2.9395 0.0017205 585.3090593257035 87.836 0.30969 87.332 87.101 87.411 -0.50423 0.023454 0.00051899 NaN 1.6526 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 525830 + 7243 29677 4894 5005 0.02403459209108405 EAEPELEESE 10 Unmodified _EAEPELEESE_ 0 0 0 ENST00000483685.5_1_2:219487553-219498591:+|nuORF;ENST00000459791.5_1_2:219494200-219498591:+|nuORF;ENST00000473443.5_1_2:219483577-219498591:+|nuORF;ENSG00000115556|ENST00000450993|PLCD4 ENST00000483685.5_1_2:219487553-219498591:+|nuORF ENST00000483685.5_1_2:219487553-219498591:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8331298828125 3 387.831308 1160.47209 1.4483 0.00056171 1.2285 0.00047645 2.6768 0.0010382 387.83201736884655 32.324 0.38627 28.468 28.284 28.67 -3.8562 78 22 4 0 0 0 0.63399 1 18328 18328 8.4443 8.4443 1 104250000 7244 3137 4895 5006 8460 8460 -0.10172386931481014 EAEPETIQV 9 Unmodified _EAEPETIQV_ 0 0 0 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2783203125 2 508.250754 1014.48696 0.14277 7.2561E-05 1.3727 0.00069767 1.5154 0.00077023 508.25095754950115 70.499 0.2354 70.499 70.402 70.637 0 17 9 2 0 0 0 0.19891 1 39271 39271 11.64 3.047 1 659060 + 7245 21340 4896 5007 8461 8461 -0.019708502728462918 EAEQILATAVY 11 Unmodified _EAEQILATAVY_ 0 0 0 nc|ENSG00000136146|Q9NPJ6-2|MED4;ENSG00000136146|ENST00000258648|MED4 nc|ENSG00000136146|Q9NPJ6-2|MED4 nc|ENSG00000136146|Q9NPJ6-2|MED4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3148803710938 2 604.313886 1206.61322 -0.12879 -7.7832E-05 0.69534 0.0004202 0.56655 0.00034237 604.3143232342961 63.82 0.31497 63.82 63.659 63.974 0 29 12 3 0 0 0 0.2736 1 35569 35569 41.956 21.541 1 3310600 7246 4792 4897 5008 8462 8462 0.01817656232447007 EAEQSVVEG 9 Unmodified _EAEQSVVEG_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.4276733398438 1 947.431632 946.424355 -0.26255 -0.00024875 -2.2801 -0.0021602 -2.5426 -0.002409 947.4299429979095 68.8 0.32182 68.8 68.656 68.978 0 28 13 3 0 0 0 0.51218 1 38307 38307 6.7232 0.51738 1 1845200 + 7247 19147 4898 5009 8463 8463 -0.050999963410276905 EAEVSAFSF 9 Unmodified _EAEVSAFSF_ 0 0 0 REV__ENSG00000178233|ENST00000451188|TMEM151B REV__ENSG00000178233|ENST00000451188|TMEM151B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.3009033203125 2 493.726915 985.439277 0.50435 0.00024901 -1.2718 -0.00062794 -0.76748 -0.00037893 493.72645359524046 60.614 0.26913 60.614 60.474 60.743 0 21 11 2 0 0 0 0.18882 1 33849 33849 15.847 2.3393 1 1429100 + 7248 23031 4899 5010 8464 8464 -0.054025044730451555 EAEWRIGDR 9 Unmodified _EAEWRIGDR_ 0 0 0 REV__ENSG00000186523|ENST00000448228|FAM86B1 REV__ENSG00000186523|ENST00000448228|FAM86B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2803955078125 2 566.280712 1130.54687 NaN NaN NaN NaN NaN NaN NaN 18.748 1 18.754 18.254 19.254 0.0060463 0 0 0 0.84737 1 9513 9513 1.8442 0 1 + 7249 20749 4900 5011 8465 8465 -0.01318114818968752 EAEYYGDRC 9 Unmodified _EAEYYGDRC_ 0 0 0 REV__ENSG00000162924|ENST00000394479|REL REV__ENSG00000162924|ENST00000394479|REL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2166748046875 2 553.216388 1104.41822 0.35285 0.0001952 1.2362 0.00068389 1.5891 0.00087909 553.2169983778967 46.947 0.31929 46.947 46.762 47.081 0 38 15 4 0 0 0 0.49272 1 25641 25641 7.9102 0.62092 1 13122000 + 7250 21705 4901 5012 8466 8466 -0.12980837844202142 EAFAEAVKTVF 11 Unmodified _EAFAEAVKTVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3192138671875 2 606.318971 1210.62339 0.41583 0.00025212 0.44516 0.00026991 0.86099 0.00052203 606.3192589091136 68.501 0.29318 68.021 67.825 68.118 -0.48071 31 12 4 0 0 0 5.2027E-06 1 37413 37413 94.909 65.827 1 3839200 7251 8296;16388 4902 5013 8467 8467 0.02650263957639254 EAFAEFQQF 9 Unmodified _EAFAEFQQF_ 0 0 0 ENSG00000036448|ENST00000262113|MYOM2;ENST00000520779.1_1_8:2088796-2113099:+|nuORF ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7518310546875 2 558.753464 1115.49238 0.093602 5.23E-05 -0.63903 -0.00035706 -0.54542 -0.00030476 558.7527427339326 70.824 0.31726 70.824 70.637 70.954 0 75 38 2 0 0 0 0.052168 1 39498 39498 44.407 27.465 1 3155900 7252 622 4903 5014 8468 8468 -0.0607512669037078 EAFAEFQQF 9 Unmodified _EAFAEFQQF_ 0 0 0 ENSG00000036448|ENST00000262113|MYOM2;ENST00000520779.1_1_8:2088796-2113099:+|nuORF ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7553100585938 2 558.753464 1115.49238 0.68748 0.00038413 0.42801 0.00023915 1.1155 0.00062328 558.753776361845 71.359 0.35 70.881 70.747 71.097 -0.47735 30 14 4 0 0 0 0.087258 1 39049 39049 36.044 17.909 1 832210 7253 622 4903 5014 8469 8469 -0.0607512669037078 EAFDELLASKY 11 Unmodified _EAFDELLASKY_ 0 0 0 ENST00000464302.1_1_1:192779521-192780331:+|nuORF;nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2 ENST00000464302.1_1_1:192779521-192780331:+|nuORF ENST00000464302.1_1_1:192779521-192780331:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.3214721679688 2 643.319168 1284.62378 -0.074418 -4.7874E-05 0.60433 0.00038878 0.52991 0.0003409 643.319562657308 65.652 0.3287 65.652 65.447 65.776 0 35 13 4 0 0 0 0.0062377 2 36576 36576;36674 73.196 60.154 1 4619800 7254 3248 4904 5015 8470;8471 8470 -0.007143611131368743 EAFDELLASKY 11 Unmodified _EAFDELLASKY_ 0 0 0 ENST00000464302.1_1_1:192779521-192780331:+|nuORF;nc|ENSG00000116741|P41220-4|RGS2;nc|ENSG00000116741|P41220-3|RGS2;nc|ENSG00000116741|P41220-2|RGS2;ENSG00000116741|ENST00000235382|RGS2 ENST00000464302.1_1_1:192779521-192780331:+|nuORF ENST00000464302.1_1_1:192779521-192780331:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.3207397460938 2 643.319168 1284.62378 -0.092038 -5.921E-05 -0.77236 -0.00049687 -0.8644 -0.00055608 643.3183710113452 66.169 0.22372 65.685 65.521 65.744 -0.48323 19 11 2 0 0 0 0.27261 1 36078 36078 28.234 16.593 1 4329900 7255 3248 4904 5015 8472 8472 -0.007143611131368743 EAFDGARDM 9 Oxidation (M) _EAFDGARDM(Oxidation (M))_ EAFDGARDM(1) EAFDGARDM(46) 0 0 1 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.712890625 2 514.211106 1026.40766 1.0756 0.00055307 -0.4676 -0.00024045 0.60797 0.00031262 514.2106988480438 20.679 0.36416 17.986 17.841 18.205 -2.693 41 23 2 0 0 0 0.047788 1 11028 11028 45.7 32.192 1 2223800 7256 4598 4905 5016 8473 8473 837 -0.10448820498640998 EAFDGARDM 9 Unmodified _EAFDGARDM_ 0 0 0 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.000244140625 2 506.213649 1010.41274 1.3566 0.00068674 -1.7955 -0.00090893 -0.43892 -0.00022219 506.2124977587775 33.856 0.34078 29.871 29.643 29.984 -3.9853 27 18 2 0 0 0 0.098534 1 19434 19434 34.932 2.8151 1 6435000 7257 4598 4905 5017 8474 8474 -0.09204516636020799 EAFDSTSRF 9 Unmodified _EAFDSTSRF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.240234375 2 530.240721 1058.46689 0.60547 0.00032104 -1.2874 -0.00068263 -0.68192 -0.00036158 530.2398141537388 36.192 0.25848 36.192 36.032 36.29 0 28 12 3 0 0 0 0.029718 1 19174 19174 55.503 30.829 1 10678000 7258 2944 4906 5018 8475 8475 -0.06000601212804213 EAFDSTSRF 9 Unmodified _EAFDSTSRF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.7742919921875 2 530.240721 1058.46689 0.28349 0.00015032 1.5883 0.00084219 1.8718 0.00099251 530.2418064368323 41.309 0.21807 36.701 36.583 36.801 -4.6079 22 13 2 0 0 0 0.16954 1 24826 24826 14.405 7.6822 1 9748500 7259 2944 4906 5018 8476 8476 -0.06000601212804213 EAFEHENKF 9 Unmodified _EAFEHENKF_ 0 0 0 ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENST00000548259.1_1_12:110930799-110939856:-|nuORF ENSG00000111237|ENST00000549578|VPS29 ENSG00000111237|ENST00000549578|VPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5104064941406 3 384.176972 1149.50909 -0.44806 -0.00017214 -1.8227 -0.00070024 -2.2708 -0.00087238 384.1759996585208 24.998 0.071636 24.998 24.979 25.051 0 17 10 2 0 0 0 0.51218 1 12798 12798 10.8 5.5026 1 1142600 7260 2770 4907 5019 8477 8477 -0.05968625804439398 EAFFSHVL 8 Unmodified _EAFFSHVL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2427368164062 2 475.242535 948.470518 0.16346 7.7685E-05 1.2826 0.00060954 1.4461 0.00068723 475.2426050327195 65.108 0.23912 65.108 64.955 65.194 0 23 10 3 0 0 0 0.35156 1 36289 36289 49.669 21.496 1 2328100 7261 4372 4908 5020 8478 8478 -0.005778866482842204 EAFFSHVL 8 Unmodified _EAFFSHVL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.242431640625 2 475.242535 948.470518 0.26593 0.00012638 -0.030996 -1.4731E-05 0.23493 0.00011165 475.24242997532207 65.5 0.34126 65.015 64.854 65.195 -0.48428 41 15 4 0 0 0 0.2655 2 35710 35710;35826 59.795 31.622 1 9955900 7262 4372 4908 5020 8479;8480 8479 -0.005778866482842204 EAFFSPPSTY 10 Unmodified _EAFFSPPSTY_ 0 0 0 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 REV__nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2586059570312 2 573.261122 1144.50769 -0.21152 -0.00012126 -2.6366 -0.0015115 -2.8481 -0.0016327 573.2597806745912 26.332 0.22051 26.332 26.208 26.428 0 22 10 3 0 0 0 0.52888 1 13527 13527 14.838 0.93222 1 2009300 + 7263 22648 4909 5021 8481 8481 -0.05878259893165705 EAFGNAKTVY 10 Unmodified _EAFGNAKTVY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2755126953125 2 550.274564 1098.53457 -0.27784 -0.00015289 1.9669 0.0010823 1.6891 0.00092945 550.2761008286097 33.801 0.21982 33.801 33.728 33.947 0 16 10 2 0 0 0 0.34249 1 17774 17774 24.991 14.167 1 1772600 7264 5706 4910 5022 8482 8482 -0.010751512820206699 EAFGTDICSR 10 Unmodified _EAFGTDICSR_ 0 0 0 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.74755859375 2 549.747856 1097.48116 -0.32689 -0.00017971 0.01928 1.0599E-05 -0.30761 -0.00016911 549.747991805292 15.9 0.40415 15.9 15.618 16.022 0 142 96 2 0 0 0 0.70363 1 7735 7735 2.4985 1.169 1 1011000 + 7265 29850 4911 5023 8483 8483 -0.06368272056170099 EAFKAIGTAY 10 Unmodified _EAFKAIGTAY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7799682617188 2 535.779482 1069.54441 0.81351 0.00043586 -0.39403 -0.00021111 0.41948 0.00022475 535.779310885097 42.937 0.30977 42.937 42.756 43.065 0 56 15 5 0 0 0 0.10424 1 23229 23229 45.7 26.443 1 178150000 7266 5958 4912 5024 8484 8484 0.0124203672337444 EAFKAIGTAY 10 Unmodified _EAFKAIGTAY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.779541015625 2 535.779482 1069.54441 0.10822 5.7983E-05 -0.086008 -4.6081E-05 0.022213 1.1901E-05 535.7793662948246 43.199 0.30775 42.889 42.699 43.007 -0.31039 42 14 4 0 0 0 0.0055438 1 22932 22932 96.936 53.077 1 69316000 7267 5958 4912 5024 8485 8485 0.0124203672337444 EAFKAIGTAY 10 Unmodified _EAFKAIGTAY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7798461914062 2 535.779482 1069.54441 0.63409 0.00033973 0.15261 8.1763E-05 0.7867 0.0004215 535.7797433264687 42.849 0.21822 42.84 42.725 42.943 -0.0088196 17 9 2 0 0 0 0.021614 1 22954 22954 74.2 41.414 1 5991500 7268 5958 4912 5024 8486 8486 0.0124203672337444 EAFKAIGTAY 10 Unmodified _EAFKAIGTAY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.780029296875 2 535.779482 1069.54441 0.7139 0.00038249 -0.18715 -0.00010027 0.52675 0.00028222 535.7795011002336 48.727 0.48802 43.331 43.084 43.572 -5.3961 74 28 3 0 0 0 0.00089362 2 30403 30274;30403 114.19 58.684 1 433450000 7269 5958 4912 5024 8487;8488 8488 0.0124203672337444 EAFKDSEGY 9 Unmodified _EAFKDSEGY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.270751953125 2 523.227279 1044.44001 -0.036105 -1.8891E-05 1.3071 0.0006839 1.271 0.00066501 523.2274925332983 24.906 0.28601 24.906 24.66 24.946 0 30 16 3 0 0 0 0.19205 1 12685 12685 10.074 4.3135 1 1996900 7270 10721 4913 5025 8489 8489 -0.08043709823982681 EAFKDSEGYIY 11 Unmodified _EAFKDSEGYIY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.8009033203125 2 661.300975 1320.5874 -0.5079 -0.00033587 0.77009 0.00050926 0.26219 0.00017339 661.3011610282828 44.722 0.21786 44.722 44.629 44.847 0 30 11 3 0 0 0 0.0086238 1 24321 24321 69.338 48.885 1 37361000 7271 10721 4914 5026 8490 8490 -0.06007238009829052 EAFKDSEGYIY 11 Unmodified _EAFKDSEGYIY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.300537109375 2 661.300975 1320.5874 0.68821 0.00045511 -0.017171 -1.1355E-05 0.67104 0.00044376 661.3009016853833 51.032 0.32781 45.383 45.184 45.511 -5.649 46 19 3 0 0 0 4.5211E-07 2 32126 31995;32126 105.35 68.839 1 45677000 7272 10721 4914 5026 8491;8492 8492 -0.06007238009829052 EAFLDVGEY 9 Unmodified _EAFLDVGEY_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7400512695312 2 521.740022 1041.46549 0.5213 0.00027199 0.54283 0.00028322 1.0641 0.0005552 521.7398009446049 68.97 0.50513 68.97 68.764 69.269 0 61 21 4 0 0 0 0.087258 2 38471 38377;38471 36.044 17.909 1 9103400 7273 3410 4915 5027 8493;8494 8494 -0.05358235301559944 EAFLNNQEY 9 Unmodified _EAFLNNQEY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2544555664062 2 564.253828 1126.4931 0.84033 0.00047416 -0.0050705 -2.861E-06 0.83526 0.0004713 564.2537019097571 47.734 0.39911 47.734 47.537 47.936 0 74 18 5 0 0 0 0.06187 2 26091 26091;26200 42.095 27.256 1 134550000 7274 3108 4916 5028 8495;8496 8495 -0.06508332041335052 EAFLNNQEY 9 Unmodified _EAFLNNQEY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2542114257812 2 564.253828 1126.4931 1.3223 0.00074613 -0.79626 -0.00044929 0.52607 0.00029684 564.2536142601309 55.343 0.60696 49.422 49.193 49.8 -5.9211 91 37 3 0 0 0 0.015445 3 35095 35095;35235;35375 68.081 44.932 1 134850000 7275 3108 4916 5028 8497;8498;8499 8497 -0.06508332041335052 EAFLVPAY 8 Unmodified _EAFLVPAY_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 909.4713134765625 1 909.471646 908.46437 0.080339 7.3066E-05 2.1847 0.0019869 2.265 0.00206 909.4733915995391 72.356 0.31334 72.356 72.198 72.511 0 28 12 3 0 0 0 0.50586 2 40244 40244;40341 34.187 11.735 1 1404600 7276 10350 4917 5029 8500;8501 8500 0.006475951201764474 EAFLVPAY 8 Unmodified _EAFLVPAY_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2409057617188 2 455.239461 908.46437 0.48952 0.00022285 2.4645 0.0011219 2.954 0.0013448 455.24088777510775 72.349 0.17491 72.349 72.258 72.433 0 9 6 2 0 0 0 0.78849 1 40309 40309 9.3474 2.9933 1 272800 7277 10350 4917 5029 8502 8502 0.006475951201764474 EAFLVPAY 8 Unmodified _EAFLVPAY_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 909.473388671875 1 909.471646 908.46437 0.22763 0.00020702 0.31952 0.00029059 0.54714 0.00049761 909.4715481006016 72.807 0.24536 72.331 72.251 72.497 -0.47588 18 10 2 0 0 0 0.50586 1 39831 39831 34.187 17.245 1 1025600 7278 10350 4917 5029 8503 8503 0.006475951201764474 EAFLVPAY 8 Unmodified _EAFLVPAY_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4694213867188 1 909.471646 908.46437 0.51811 0.00047121 -0.10974 -9.9808E-05 0.40837 0.0003714 909.4715052453555 80.281 0.35835 74.105 73.975 74.334 -6.1757 32 20 2 0 0 0 0.19755 1 52623 52623 70.865 44.523 1 13263000 7279 10350 4917 5029 8504 8504 0.006475951201764474 EAFLVPAY 8 Unmodified _EAFLVPAY_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4744262695312 1 909.471646 908.46437 0.70472 0.00064092 0.41753 0.00037974 1.1223 0.0010207 909.4718584517245 81.192 0.38321 75.017 74.827 75.21 -6.1757 32 22 2 0 0 0 0.2655 1 53216 53216 59.795 25.608 1 11847000 7280 10350 4917 5029 8505 8505 0.006475951201764474 EAFPGRAEM 9 Unmodified _EAFPGRAEM_ 0 0 0 ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2359619140625 2 504.234384 1006.45422 0.90588 0.00045677 1.8733 0.00094457 2.7792 0.0014013 504.2353800528089 39.247 0.38239 34.796 34.645 35.028 -4.4509 38 23 2 0 0 0 0.091924 1 23296 23296 34.932 7.3033 1 8554300 7281 10038 4918 5030 8506 8506 -0.04875335876693043 EAFPHDSQL 9 Unmodified _EAFPHDSQL_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2445678710938 2 522.243264 1042.47197 0.48275 0.00025211 1.0887 0.00056858 1.5715 0.00082069 522.243867937085 35.996 0.33246 35.996 35.816 36.148 0 27 16 2 0 0 0 0.19127 1 19123 19123 24.021 9.1823 1 5223900 7282 1064 4919 5031 8507 8507 -0.04756297350195382 EAFPHDSQL 9 Unmodified _EAFPHDSQL_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7957153320312 2 522.243264 1042.47197 1.3977 0.00072997 -0.77107 -0.00040269 0.62668 0.00032728 522.2428806977076 40.953 0.23783 36.345 36.211 36.449 -4.6079 23 14 2 0 0 0 0.091436 1 24489 24489 27.629 18.246 1 9301300 7283 1064 4919 5031 8508 8508 -0.04756297350195382 EAFQGTKVF 9 Unmodified _EAFQGTKVF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7667236328125 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 44.88 1 44.88 44.38 45.38 0 0 0 0 0.017438 1 24438 24438 81.89 20.533 1 7284 4327 4920 5032 8509 8509 0.0064576755189591495 EAFQGTKVF 9 Unmodified _EAFQGTKVF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.766845703125 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 45.045 1 44.721 44.221 45.221 -0.32425 0 0 0 0.011986 1 24045 24045 89.401 28.043 1 7285 4327 4920 5032 8510 8510 0.0064576755189591495 EAFQGTKVF 9 Unmodified _EAFQGTKVF_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MSMS AL20221201_MKP_PDAC_01 4 513.77001953125 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 50.586 1 45.047 44.547 45.547 -5.5391 0 0 0 0.083082 1 31756 31756 47.749 9.7747 1 7286 4327 4920 5032 8511 8511 0.0064576755189591495 EAFQKHIQAL 10 Unmodified _EAFQKHIQAL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MSMS AL20221201_MKP_PDAC_01 4 592.8239135742188 2 592.824755 1183.63496 NaN NaN NaN NaN NaN NaN NaN 99.31 1 93.135 92.635 93.635 -6.1757 0 0 0 0.44191 1 66094 66094 29.082 0 1 7287 3478 4921 5033 8512 8512 0.05048505771674172 EAFREELLGA 10 Unmodified _EAFREELLGA_ 0 0 0 REV__ENSG00000188613|ENST00000425699|NANOS1 REV__ENSG00000188613|ENST00000425699|NANOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8673706054688 3 378.864506 1133.57169 1.491 0.0005649 -0.17861 -6.767E-05 1.3124 0.00049723 378.8643299900765 19.493 0.53681 16.837 16.612 17.149 -2.6564 187 45 5 0 0 0 0.44171 2 10222 10222;10438 17.049 6.1496 1 922020000 + 7288 23720 4922 5034 8513;8514 8513 0.010245202637634065 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2777099609375 2 604.278169 1206.54179 -0.71861 -0.00043424 -0.44312 -0.00026777 -1.1617 -0.00070201 604.2778262019681 18.471 0.20964 18.471 18.361 18.571 0 89 25 4 0 0 0 0.11784 2 9138 9138;9242 31.268 21.194 1 19428000 7289 16196 4923 5035 8515;8516 8515 -0.05322418681566887 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.1880187988281 3 403.187871 1206.54179 -0.11819 -4.7654E-05 2.0692 0.00083426 1.951 0.00078661 403.1883145555233 18.453 0.14475 18.459 18.386 18.531 0.0060463 17 6 4 0 0 0 0.25681 1 9352 9352 13.615 7.7467 1 4403500 7290 16196 4923 5035 8517 8517 -0.05322418681566887 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.1879577636719 3 403.187871 1206.54179 1.1944 0.00048156 0.39606 0.00015969 1.5904 0.00064124 403.18785963062805 19.742 0.47921 17.086 16.89 17.369 -2.6564 118 30 5 0 0 0 0.1773 2 10400 10400;10505 18.373 12.181 1 194400000 7291 16196 4923 5035 8518;8519 8518 -0.05322418681566887 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.2778930664062 2 604.278169 1206.54179 0.59909 0.00036202 -0.12232 -7.3915E-05 0.47677 0.0002881 604.2780154767258 19.748 0.34045 17.092 16.898 17.239 -2.6564 71 22 4 0 0 0 0.0093064 2 10405 10405;10514 83.429 49.027 1 44414000 7292 16196 4923 5035 8520;8521 8520 -0.05322418681566887 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 403.187871 1206.54179 -0.56681 -0.00022853 0.36808 0.00014841 -0.19873 -8.0127E-05 403.1877938882457 18.633 0.080236 18.633 18.611 18.692 0 0.14223 -0.0016937 NaN 13.615 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 506440 7293 16196 4923 5035 -0.05322418681566887 EAFREHQQY 9 Unmodified _EAFREHQQY_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1;ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 403.187871 1206.54179 -0.53343 -0.00021507 1.9443 0.00078393 1.4109 0.00056886 403.1885720677273 18.357 0.1326 18.38 18.326 18.459 0.023106 -0.11045 0.00021292 NaN 13.615 68 25 4 NaN NaN NaN NaN 0 NaN NaN 0 1219200 7294 16196 4923 5035 -0.05322418681566887 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8651123046875 3 378.864952 1133.57303 -0.54135 -0.0002051 -0.098536 -3.7332E-05 -0.63988 -0.00024243 378.8648927341578 18.383 0.20072 18.383 18.301 18.501 0 106 30 5 0 0 0 0.033587 1 9106 9106 53.404 35.258 1 67086000 7295 10454 4924 5036 8522 8522 0.011581991431967253 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8643798828125 3 378.864952 1133.57303 -0.55479 -0.00021019 0.16255 6.1584E-05 -0.39224 -0.00014861 378.86499042261204 18.255 0.2674 18.269 18.163 18.43 0.013865 195 51 5 0 0 0 0.047714 2 9097 9097;9197 45.74 32.697 1 154660000 7296 10454 4924 5036 8523;8524 8523 0.011581991431967253 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7939453125 2 567.793789 1133.57303 -0.39175 -0.00022243 0.77647 0.00044088 0.38472 0.00021844 567.7940818359021 18.25 0.091141 18.264 18.221 18.312 0.013865 32 21 2 0 0 0 0.46162 1 9133 9133 5.7319 1.7875 1 1347500 7297 10454 4924 5036 8525 8525 0.011581991431967253 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8648071289062 3 378.864952 1133.57303 0.067214 2.5465E-05 0.05579 2.1137E-05 0.123 4.6602E-05 378.8649841372547 18.391 0.19313 18.397 18.3 18.493 0.0060463 27 9 4 0 0 0 0.047714 1 9297 9297 45.74 28.691 1 24171000 7298 10454 4924 5036 8526 8526 0.011581991431967253 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.794677734375 2 567.793789 1133.57303 1.1515 0.00065383 -0.80587 -0.00045757 0.34567 0.00019627 567.793362354684 19.498 0.32741 16.842 16.675 17.003 -2.6564 92 30 4 0 0 0 0.0084276 2 10273 10273;10384 99.755 53.734 1 37844000 7299 10454 4924 5036 8527;8528 8527 0.011581991431967253 EAFRGVHRY 9 Unmodified _EAFRGVHRY_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 567.793789 1133.57303 -0.27474 -0.000156 -0.051978 -2.9513E-05 -0.32672 -0.00018551 567.7934861925745 18.386 0.04525 18.386 18.354 18.4 0 0.061106 -0.00056009 NaN 5.7319 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 523960 7300 10454 4924 5036 0.011581991431967253 EAFRTREEY 9 Unmodified _EAFRTREEY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7860107421875 2 600.785827 1199.5571 -0.4712 -0.00028309 0.88308 0.00053054 0.41188 0.00024745 600.7866499055041 23.919 0.2828 21.092 20.931 21.213 -2.8273 27 16 2 0 0 0 0.094149 1 12935 12935 34.402 18.555 1 3645400 7301 410 4925 5037 8529 8529 -0.03469551884381872 EAFRTREEY 9 Unmodified _EAFRTREEY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8603515625 3 400.859643 1199.5571 0.31847 0.00012766 2.2092 0.00088559 2.5277 0.0010132 400.8599487049799 23.935 0.35023 21.107 20.915 21.265 -2.8273 51 20 4 0 0 0 0.25681 1 13009 13009 23.79 19.261 1 17652000 7302 410 4925 5037 8530 8530 -0.03469551884381872 EAFSNDIR 8 Unmodified _EAFSNDIR_ 0 0 0 REV__nc|ENSG00000166037|Q86XR8-4|CEP57 REV__nc|ENSG00000166037|Q86XR8-4|CEP57 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2310791015625 2 476.230156 950.445759 NaN NaN NaN NaN NaN NaN NaN 20.378 1 20.406 19.906 20.906 0.028357 0 0 0 0.97444 1 10312 10312 4.3292 0 1 + 7303 29759 4926 5038 8531 8531 -0.03144566521677916 EAFSPVYKY 9 Unmodified _EAFSPVYKY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2724609375 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 46.142 1 45.805 45.305 46.305 -0.33664 0 0 0 0.074615 1 24685 24685 49.933 29.479 1 7304 6962 4927 5039 8532 8532 -0.013653656509177381 EAFSPVYKY 9 Unmodified _EAFSPVYKY_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2742309570312 2 552.274032 1102.53351 0.63172 0.00034888 -0.088923 -4.911E-05 0.5428 0.00029977 552.2737123683847 51.628 0.21909 45.979 45.833 46.052 -5.649 21 13 2 0 0 0 0.0090524 1 32469 32469 85.642 45.684 1 48149000 7305 6962 4927 5039 8533 8533 -0.013653656509177381 EAFSQRVGF 9 Unmodified _EAFSQRVGF_ 0 0 0 ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7628173828125 2 520.761623 1039.50869 0.026606 1.3855E-05 2.5463 0.001326 2.5729 0.0013399 520.7626528467438 45.134 0.27306 45.134 44.996 45.269 0 18 13 2 0 0 0 0.024882 1 24588 24588 58.679 16.839 1 4005200 7306 7231 4928 5040 8534 8534 -0.009480007336151175 EAFSQRVGF 9 Unmodified _EAFSQRVGF_ 0 0 0 ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7604370117188 2 520.761623 1039.50869 -0.094772 -4.9354E-05 -0.92266 -0.00048048 -1.0174 -0.00052984 520.7607500738764 45.385 0.19867 45.061 44.996 45.195 -0.32425 20 12 2 0 0 0 0.0021556 1 24239 24239 131.27 81.335 1 22964000 7307 7231 4928 5040 8535 8535 -0.009480007336151175 EAFSQRVGF 9 Unmodified _EAFSQRVGF_ 0 0 0 ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C ENSG00000164695|ENST00000297265|CHMP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7600708007812 2 520.761623 1039.50869 1.1449 0.00059623 -0.88415 -0.00046043 0.26077 0.0001358 520.7609352638152 50.933 0.34687 45.284 45.117 45.463 -5.649 33 20 2 0 0 0 0.0044708 1 31968 31968 118.89 68.962 1 41363000 7308 7231 4928 5040 8536 8536 -0.009480007336151175 EAFVERDSLHF 11 Unmodified _EAFVERDSLHF_ 0 0 0 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 ENSG00000137975|ENST00000370565|CLCA2 MSMS AL20221201_MKP_PDAC_01 4 675.3248901367188 2 675.327859 1348.64116 NaN NaN NaN NaN NaN NaN NaN 100.74 1 94.56 94.06 95.06 -6.1757 0 0 0 0.76159 1 67441 67441 13.906 1.3745 1 7309 4997 4929 5041 8537 8537 -0.019210207874948537 EAFVHVVTL 9 Unmodified _EAFVHVVTL_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7839050292969 2 507.784567 1013.55458 0.38713 0.00019658 0.15906 8.0768E-05 0.54619 0.00027735 507.78444129415965 63.072 0.25049 63.072 62.92 63.17 0 23 10 3 0 0 0 0.012148 1 35182 35182 74.423 45.936 1 2447700 7310 10730 4930 5042 8538 8538 0.048346444486242035 EAFVHVVTL 9 Unmodified _EAFVHVVTL_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7846069335938 2 507.784567 1013.55458 -0.026281 -1.3345E-05 0.11819 6.0017E-05 0.091913 4.6672E-05 507.78467571587595 63.486 0.30839 62.999 62.841 63.149 -0.48617 32 13 3 0 0 0 0.0088975 1 34617 34617 104.8 68.755 1 3931300 7311 10730 4930 5042 8539 8539 0.048346444486242035 EAGNELML 8 Unmodified _EAGNELML_ 0 0 0 ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7105712890625 2 438.710211 875.405868 NaN NaN NaN NaN NaN NaN NaN 22.151 1 22.151 21.651 22.651 0 0 0 0 0.97444 1 11257 11257 3.9444 1.0552 1 7312 9707 4931 5043 8540 8540 -0.036818295165971904 EAGQEDYMY 9 Unmodified _EAGQEDYMY_ 0 0 0 REV__ENST00000493197.5_1_5:177656705-177658704:-|nuORF REV__ENST00000493197.5_1_5:177656705-177658704:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2122192382812 2 553.210772 1104.40699 0.42156 0.00023321 2.617 0.0014477 3.0385 0.0016809 553.2122505913892 62.817 0.2646 62.817 62.655 62.92 0 18 10 2 0 0 0 0.54444 1 35034 35034 4.756 0 1 1178300 + 7313 22863 4932 5044 8541 8541 -0.1410365993835967 EAGQLDLVWP 10 Unmodified _EAGQLDLVWP_ 0 0 0 REV__nc|ENSG00000147789|P17097-3|ZNF7 REV__nc|ENSG00000147789|P17097-3|ZNF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2909545898438 2 564.290214 1126.56587 0.62625 0.00035339 0.6169 0.00034811 1.2432 0.0007015 564.2905783409607 47.461 0.47355 47.461 47.171 47.644 0 66 21 5 0 0 0 0.54684 1 26075 26075 13.906 3.0821 1 108870000 + 7314 20911 4933 5045 8542 8542 0.007654217520894235 EAGRRRSEY 9 Unmodified _EAGRRRSEY_ 0 0 0 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 ENSG00000123405|ENST00000435572|NFE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.287109375 2 562.283786 1122.55302 1.0181 0.00057243 3.0605 0.0017209 4.0786 0.0022933 562.2856630738994 31.173 0.20228 27.477 27.322 27.524 -3.6958 11 9 2 0 0 0 0.14 1 17640 17640 29.082 4.0906 1 32566000 7315 3707 4934 5046 8543 8543 -0.0033559658741069143 EAGSLVYVHR 10 Unmodified _EAGSLVYVHR_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.5499572753906 3 377.536612 1129.58801 0.54646 0.00020631 -0.20306 -7.6661E-05 0.3434 0.00012965 377.53644231419 25.068 0.23812 22.184 22.05 22.289 -2.8831 48 27 2 0 0 0 0.23806 1 13739 13739 3.3196 3.1128 1 13660000 7316 8336 4935 5047 8544 8544 0.02839646220513714 EAHLELNAF 9 Unmodified _EAHLELNAF_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2620849609375 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 56.874 1 56.874 56.374 57.374 0 0 0 0 0.04157 1 31642 31642 61.357 34.474 1 7317 765;7479 4936 5048 8545 8545 -0.011194204534831442 EAHLELNAF 9 Unmodified _EAHLELNAF_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.261962890625 2 522.261456 1042.50836 0.38472 0.00020092 -0.77562 -0.00040508 -0.3909 -0.00020415 522.261171531667 57.414 0.27303 56.925 56.773 57.046 -0.48974 20 12 2 0 0 0 0.022193 1 31190 31190 61.357 29.052 1 1989400 7318 765;7479 4936 5048 8546 8546 -0.011194204534831442 EAHLELNAF 9 Unmodified _EAHLELNAF_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2625122070312 2 522.261456 1042.50836 0.86917 0.00045393 1.7708 0.00092484 2.64 0.0013788 522.2612331525183 63.137 0.56599 56.962 56.676 57.242 -6.1757 62 30 3 0 0 0 0.015445 2 40921 40783;40921 68.081 40.452 1 48031000 7319 765;7479 4936 5048 8547;8548 8548 -0.011194204534831442 EAHMLEMRF 9 Unmodified _EAHMLEMRF_ 0 0 0 REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2675170898438 2 582.270444 1162.52633 0.4865 0.00028328 -2.321 -0.0013515 -1.8345 -0.0010682 582.2688964301328 57.606 0.40172 57.606 57.371 57.772 0 26 19 2 0 0 0 0.43463 1 32148 32148 10.824 2.9138 1 7778100 + 7320 18624 4937 5049 8549 8549 -0.048427447946096436 EAHMYASQWF 10 Unmodified _EAHMYASQWF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000152061|Q5R372-4|RABGAP1L ENSG00000011454|ENST00000373647|RABGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.2727661132812 2 635.271498 1268.52844 0.12664 8.0453E-05 1.3336 0.0008472 1.4602 0.00092765 635.2726507431604 47.16 0.31539 47.16 46.999 47.314 0 22 14 3 0 0 0 0.46514 1 25795 25795 18.146 3.3081 1 3102700 7321 449;6160 4938 5050 8550 8550 -0.09507992785188435 EAHPYPDS 8 Unmodified _EAHPYPDS_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.1961059570312 2 458.195782 914.377011 0.48103 0.0002204 0.30144 0.00013812 0.78247 0.00035852 458.1957064884753 39.95 0.31416 39.95 39.775 40.089 0 26 15 2 0 0 0 0.80232 1 21469 21469 5.2307 5.2307 1 2361600 + 7322 19112 4939 5051 8551 8551 -0.08360230821369896 EAHQAVAF 8 Unmodified _EAHQAVAF_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7174072265625 2 436.716685 871.418816 0.89378 0.00039033 -0.09806 -4.2824E-05 0.79572 0.0003475 436.71684139083385 42.996 0.37879 38.311 38.107 38.485 -4.6846 53 24 3 0 0 0 0.48669 2 26103 25973;26103 36.044 5.8194 1 24519000 7323 2701;10371 4940 5052 8552;8553 8553 -0.02203630342194174 EAHQAVAF 8 Unmodified _EAHQAVAF_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B;nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000205560|Q92523-2|CPT1B;nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.716685 871.418816 0.59863 0.00026143 0.45685 0.00019951 1.0555 0.00046095 436.71685893324224 38.7 0.34303 38.7 38.515 38.858 0 0.19435 0.00019927 NaN 36.044 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 11160000 7324 2701;10371 4940 5052 -0.02203630342194174 EAHSAGDF 8 Unmodified _EAHSAGDF_ 0 0 0 nc|ENSG00000112293|P80108-2|GPLD1;ENST00000378243.8_1_6:24473808-24489784:-|nuORF;ENSG00000112293|ENST00000230036|GPLD1 nc|ENSG00000112293|P80108-2|GPLD1 nc|ENSG00000112293|P80108-2|GPLD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.1724243164062 2 417.17485 832.335146 NaN NaN NaN NaN NaN NaN NaN 63.597 1 63.597 63.097 64.097 0 0 0 0 0.97444 1 35475 35475 2.8892 0 1 7325 2878 4941 5053 8554 8554 -0.08772786509905472 EAHSILESY 9 Unmodified _EAHSILESY_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38;nc|ENSG00000236699|Q9NXL2-1|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7496948242188 2 524.750921 1047.48729 0.39906 0.00020941 -1.8334 -0.0009621 -1.4344 -0.00075269 524.7497028561842 42.127 0.2275 42.127 42.011 42.238 0 18 11 2 0 0 0 0.0090851 1 22761 22761 85.357 27.885 1 11463000 7326 10649 4942 5054 8555 8555 -0.0345543055300368 EAHSMALSM 9 2 Oxidation (M) _EAHSM(Oxidation (M))ALSM(Oxidation (M))_ EAHSM(1)ALSM(1) EAHSM(85)ALSM(85) 0 0 2 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.709716796875 2 504.709885 1007.40522 0.16615 8.3856E-05 0.19557 9.8707E-05 0.36172 0.00018256 504.70999807909544 15.868 0.3933 13.311 13.033 13.426 -2.557 159 94 2 0 0 0 0.0090851 2 8166 8065;8166 85.357 54.72 1 4975800 7327 5078 4943 5055 8556;8557 8557 931;932 -0.0981899222795164 EAHSMALSM 9 2 Oxidation (M) _EAHSM(Oxidation (M))ALSM(Oxidation (M))_ EAHSM(1)ALSM(1) EAHSM(64)ALSM(64) 0 0 2 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MSMS AL20221201_MKP_PDAC_01 4 504.7106323242188 2 504.709885 1007.40522 NaN NaN NaN NaN NaN NaN NaN 16.03 1 13.473 12.973 13.973 -2.557 0 0 0 0.035065 1 8274 8274 64.236 23.788 1 7328 5078 4943 5055 8558 8558 931;932 -0.0981899222795164 EAHSMALSM 9 Oxidation (M) _EAHSMALSM(Oxidation (M))_ EAHSMALSM(1) EAHSM(-92)ALSM(92) 0 0 1 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7129821777344 2 496.712427 991.410302 -0.056881 -2.8254E-05 0.16603 8.2471E-05 0.10915 5.4217E-05 496.71276724901577 25.476 0.37791 22.592 22.425 22.803 -2.8831 56 20 4 0 0 0 0.0088975 2 13998 13887;13998 104.8 44.908 2 15444000 7329 5078 4943 5056 8559;8560 8560 931;932 -0.0857468836533144 EAHSMALSM 9 Oxidation (M) _EAHSM(Oxidation (M))ALSM_ EAHSM(1)ALSM EAHSM(73)ALSM(-73) 0 0 1 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7124938964844 2 496.712427 991.410302 1.0412 0.00051718 1.6017 0.00079559 2.6429 0.0013128 496.7128432880669 30.406 0.45809 26.909 26.655 27.113 -3.497 35 22 2 0 0 0 0.0090851 1 17083 17083 85.357 50.955 2 9996100 7330 5078 4943 5056 8561 8561 931;932 -0.0857468836533144 EAHSMALSM 9 Unmodified _EAHSMALSM_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7150268554688 2 488.71497 975.415387 0.59208 0.00028936 0.018048 8.8203E-06 0.61013 0.00029818 488.7151521451112 43.844 0.51196 39.079 38.791 39.302 -4.7648 88 32 4 0 0 0 0.0090851 2 26564 26564;26703 85.357 44.908 1 40633000 7331 5078 4943 5057 8562;8563 8562 -0.07330384502722609 EAIALAEKY 9 Unmodified _EAIALAEKY_ 0 0 0 ENSG00000069974|ENST00000336787|RAB27A ENSG00000069974|ENST00000336787|RAB27A ENSG00000069974|ENST00000336787|RAB27A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2797241210938 2 504.274032 1006.53351 0.26234 0.00013229 2.4123 0.0012165 2.6746 0.0013487 504.2758082970787 41.977 0.30094 41.977 41.804 42.105 0 26 15 2 0 0 0 0.013609 2 22677 22677;22724 70.332 32.156 1 16340000 7332 1012 4944 5058 8564;8565 8564 0.030506343490856125 EAIALAEKY 9 Unmodified _EAIALAEKY_ 0 0 0 ENSG00000069974|ENST00000336787|RAB27A ENSG00000069974|ENST00000336787|RAB27A ENSG00000069974|ENST00000336787|RAB27A MSMS AL20221201_MKP_PDAC_01 4 504.2774963378906 2 504.274032 1006.53351 NaN NaN NaN NaN NaN NaN NaN 47.355 1 42.275 41.775 42.775 -5.0805 0 0 0 0.068038 1 29384 29384 51.63 15.503 1 7333 1012 4944 5058 8566 8566 0.030506343490856125 EAIALINSL 9 Unmodified _EAIALINSL_ 0 0 0 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2771606445312 2 472.276575 942.538597 0.30665 0.00014482 0.58964 0.00027847 0.8963 0.0004233 472.2768334889183 79.607 0.3788 79.607 79.418 79.797 0 34 15 3 0 0 0 0.026094 2 44183 44183;44276 57.471 21.427 1 1685800 7334 1929 4945 5059 8567;8568 8567 0.06502938211713172 EAIALINSL 9 Unmodified _EAIALINSL_ 0 0 0 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2765502929688 2 472.276575 942.538597 1.0099 0.00047695 -0.36637 -0.00017303 0.64351 0.00030392 472.2754785695757 80.086 0.53046 79.597 79.454 79.984 -0.48932 38 20 3 0 0 0 0.023164 1 43847 43847 60.39 15.983 1 1331100 7335 1929 4945 5059 8569 8569 0.06502938211713172 EAIALINSL 9 Unmodified _EAIALINSL_ 0 0 0 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 ENSG00000101193|ENST00000266069|GID8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 943.5490112304688 1 943.545874 942.538597 0.86865 0.00081961 -0.27108 -0.00025577 0.59757 0.00056384 943.5456678611887 80.081 0.28046 79.592 79.454 79.734 -0.48932 16 10 2 0 0 0 0.10734 1 43869 43869 32.305 3.8186 1 475490 7336 1929 4945 5059 8570 8570 0.06502938211713172 EAIALVEKA 9 Unmodified _EAIALVEKA_ 0 0 0 ENSG00000053371|ENST00000235835|AKR7A2 ENSG00000053371|ENST00000235835|AKR7A2 ENSG00000053371|ENST00000235835|AKR7A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.5469970703125 1 943.545874 942.538597 -0.1699 -0.00016031 1.3196 0.0012451 1.1497 0.0010848 943.547265954476 79.626 0.25481 79.626 79.475 79.729 0 19 10 2 0 0 0 0.32871 1 44190 44190 15.847 0 1 881420 7337 744 4946 5060 8571 8571 0.06502938211713172 EAIAVFMEH 9 Oxidation (M) _EAIAVFM(Oxidation (M))EH_ EAIAVFM(1)EH EAIAVFM(130)EH 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7492065429688 2 531.749867 1061.48518 -0.13928 -7.4064E-05 -0.0079773 -4.2419E-06 -0.14726 -7.8306E-05 531.7500063706966 44.973 0.38136 44.973 44.788 45.17 0 65 19 5 0 0 0 0.0031966 2 24430 24430;24536 125.62 87.651 1 155900000 7338 6889 4947 5061 8572;8573 8572 1193 -0.04310182562448972 EAIAVFMEH 9 Oxidation (M) _EAIAVFM(Oxidation (M))EH_ EAIAVFM(1)EH EAIAVFM(89)EH 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MSMS AL20221201_MKP_PDAC_01 4 531.7503051757812 2 531.749867 1061.48518 NaN NaN NaN NaN NaN NaN NaN 50.765 1 45.116 44.616 45.616 -5.649 0 0 0 0.012347 1 31888 31888 88.904 50.728 1 7339 6889 4947 5061 8574 8574 1193 -0.04310182562448972 EAIAVFMEH 9 Unmodified _EAIAVFMEH_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7513427734375 2 523.75241 1045.49027 -0.048755 -2.5536E-05 -0.42494 -0.00022256 -0.47369 -0.0002481 523.7522345171407 56.053 0.26846 56.053 55.916 56.184 0 35 12 4 0 0 0 0.019303 2 31136 31136;31238 64.236 42.49 1 12222000 7340 6889 4947 5062 8575;8576 8575 -0.03065878699840141 EAIAVFMEH 9 Unmodified _EAIAVFMEH_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7528686523438 2 523.75241 1045.49027 NaN NaN NaN NaN NaN NaN NaN 56.608 1 56.122 55.622 56.622 -0.48554 0 0 0 0.012347 1 30747 30747 88.904 48.946 1 7341 6889 4947 5062 8577 8577 -0.03065878699840141 EAIAVFMEH 9 Unmodified _EAIAVFMEH_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7531127929688 2 523.75241 1045.49027 1.5574 0.00081567 -0.21583 -0.00011304 1.3415 0.00070263 523.7523142499382 62.443 0.56494 56.267 56.021 56.586 -6.1757 87 29 4 0 0 0 0.00856 2 40339 40212;40339 100.37 60.414 1 142370000 7342 6889 4947 5062 8578;8579 8579 -0.03065878699840141 EAIDEYQIL 9 Unmodified _EAIDEYQIL_ 0 0 0 ENSG00000186063|ENST00000340020|AIDA;nc|ENSG00000186063|Q96BJ3-3|AIDA ENSG00000186063|ENST00000340020|AIDA ENSG00000186063|ENST00000340020|AIDA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2981567382812 2 547.274229 1092.53391 0.45399 0.00024846 -0.71623 -0.00039197 -0.26224 -0.00014351 547.2739073196644 67.57 0.31415 67.57 67.342 67.656 0 23 14 2 0 0 0 0.16229 1 37637 37637 12.532 4.6214 1 2633700 7343 9446 4948 5063 8580 8580 -0.008659907217179352 EAIDQLHLEY 10 Unmodified _EAIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8054809570312 2 615.803685 1229.59282 0.39327 0.00024218 -0.50452 -0.00031068 -0.11125 -6.8506E-05 615.803340224009 58.757 0.65765 58.757 58.535 59.192 0 65 28 3 0 0 0 0.0058437 2 32645 32645;32748 121.53 81.584 1 157100000 7344 4211 4949 5064 8581;8582 8581 -0.012795144273695769 EAIDQLHLEY 10 Unmodified _EAIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8032836914062 2 615.803685 1229.59282 0.71179 0.00043832 0.38857 0.00023928 1.1004 0.0006776 615.8036642369525 58.948 0.20193 58.887 58.762 58.964 -0.060719 15 9 2 0 0 0 0.30673 1 32129 32129 38.176 23.77 1 1833000 7345 4211 4949 5064 8583 8583 -0.012795144273695769 EAIDQLHLEY 10 Unmodified _EAIDQLHLEY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8040771484375 2 615.803685 1229.59282 0.20619 0.00012697 0.3605 0.000222 0.56668 0.00034897 615.8039349963476 65.391 0.7618 59.215 58.897 59.659 -6.1757 108 43 3 0 0 0 0.012868 3 42465 42340;42465;42592 103.82 87.674 1 257660000 7346 4211 4949 5064 8584;8585;8586 8585 -0.012795144273695769 EAIDSPVSF 9 Unmodified _EAIDSPVSF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.462646484375 1 964.462204 963.454927 0.52194 0.00050339 0.41658 0.00040178 0.93852 0.00090517 964.4623521707603 60.606 0.38335 60.606 60.427 60.811 0 43 16 4 0 0 0 0.0082281 2 33828 33732;33828 92.822 46.801 1 4441200 7347 293 4950 5065 8587;8588 8588 -0.028262179559874312 EAIDSPVSF 9 Unmodified _EAIDSPVSF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7353515625 2 482.73474 963.454927 0.62808 0.0003032 0.43575 0.00021035 1.0638 0.00051355 482.734744034313 60.614 0.40352 60.614 60.407 60.811 0 51 17 4 0 0 0 0.016184 2 33847 33739;33847 67.344 18.998 1 10108000 7348 293 4950 5065 8589;8590 8590 -0.028262179559874312 EAIDSPVSF 9 Unmodified _EAIDSPVSF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.4619140625 1 964.462204 963.454927 0.91133 0.00087894 -1.0744 -0.0010362 -0.16309 -0.00015729 964.460719247668 69.044 0.32842 62.869 62.633 62.962 -6.1757 24 17 2 0 0 0 0.00022959 2 45099 44980;45099 149.99 71.845 1 18339000 7349 293 4950 5065 8591;8592 8592 -0.028262179559874312 EAIDSPVSF 9 Unmodified _EAIDSPVSF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2361755371094 2 482.73474 963.454927 1.1087 0.00053521 0.13324 6.4322E-05 1.2419 0.00059953 482.7345500637952 68.997 0.35023 62.822 62.612 62.962 -6.1757 23 18 2 0 0 0 0.0090851 1 45013 45013 85.357 30.583 1 15586000 7350 293 4950 5065 8593 8593 -0.028262179559874312 EAIEQILKY 9 Unmodified _EAIEQILKY_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.80859375 2 553.808239 1105.60193 0.89284 0.00049446 -0.29906 -0.00016562 0.59377 0.00032884 553.8079383037059 60.417 0.35904 60.417 60.199 60.559 0 53 15 4 0 0 0 0.0013034 2 33627 33627;33733 137.42 26.137 1 42217000 7351 5638 4951 5066 8594;8595 8594 0.05334878928965736 EAIEQILKY 9 Unmodified _EAIEQILKY_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8077392578125 2 553.808239 1105.60193 -0.058783 -3.2555E-05 0.048171 2.6677E-05 -0.010612 -5.8772E-06 553.8081001295034 60.939 0.26662 60.45 60.291 60.558 -0.48932 29 12 3 0 0 0 0.00023314 1 33145 33145 149.91 26.463 1 26483000 7352 5638 4951 5066 8596 8596 0.05334878928965736 EAIEQILKY 9 Unmodified _EAIEQILKY_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.80810546875 2 553.808239 1105.60193 0.55663 0.00030827 1.1649 0.00064512 1.7215 0.00095339 553.8083016001292 66.488 0.48266 60.312 60.117 60.599 -6.1757 74 26 3 0 0 0 0.0082475 2 43322 43199;43322 92.653 27.418 1 74058000 7353 5638 4951 5066 8597;8598 8598 0.05334878928965736 EAIESSFIY 9 Unmodified _EAIESSFIY_ 0 0 0 REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.755126953125 2 529.755672 1057.49679 0.34597 0.00018328 -2.3767 -0.0012591 -2.0307 -0.0010758 529.7553342959634 62.716 0.30654 62.716 62.589 62.895 0 20 12 2 0 0 0 0.14602 1 34995 34995 28.487 0 1 1698300 + 7354 23935 4952 5067 8599 8599 -0.02965662267456537 EAIESYVL 8 Unmodified _EAIESYVL_ 0 0 0 ENST00000486363.1_1_21:33641984-33642827:-|nuORF;ENSG00000159055|ENST00000290130|MIS18A ENST00000486363.1_1_21:33641984-33642827:-|nuORF ENST00000486363.1_1_21:33641984-33642827:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 923.4725952148438 1 923.47204 922.464763 0.22777 0.00021034 0.29382 0.00027133 0.52159 0.00048167 923.4723401734599 63.05 0.30071 63.05 62.846 63.146 0 26 12 3 0 0 0 0.21786 1 35117 35117 67.035 26.587 1 2116300 7355 6621 4953 5068 8600 8600 0.00042970049389623455 EAIETDIVAY 10 Unmodified _EAIETDIVAY_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.279296875 2 562.279512 1122.54447 0.51894 0.00029179 -0.55449 -0.00031178 -0.035551 -1.999E-05 562.2793775240841 59.447 0.38596 59.447 59.307 59.693 0 39 16 3 0 0 0 0.043729 1 33160 33160 61.357 15.337 1 7550100 7356 8374 4954 5069 8601 8601 -0.011900080672830882 EAIETIVAAM 10 Unmodified _EAIETIVAAM_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2741088867188 2 524.273175 1046.5318 NaN NaN NaN NaN NaN NaN NaN 77.746 1 77.746 77.246 78.246 0 0 0 0 0.71851 1 43220 43220 15.847 3.3156 1 7357 16063;14003 4955 5070 8602 8602 0.01039257268826077 EAIETIVAAM 10 Unmodified _EAIETIVAAM_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2767333984375 2 524.273175 1046.5318 1.1603 0.00060834 -1.6538 -0.00086706 -0.4935 -0.00025873 524.2740945194013 85.958 0.30332 79.782 79.694 79.997 -6.1757 33 16 3 0 0 0 0.27276 1 56668 56668 29.082 2.1979 1 12728000 7358 16063;14003 4955 5070 8603 8603 0.01039257268826077 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7620544433594 2 486.761092 971.507631 0.46755 0.00022758 0.13109 6.3811E-05 0.59864 0.0002914 486.76104677599346 49.204 0.4446 49.204 49.042 49.487 0 60 20 5 0 0 0 0.034897 2 27020 27020;27140 52.693 29.545 1 167990000 7359 520 4956 5071 8604;8605 8604 0.020737848974818007 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.515625 1 972.514908 971.507631 0.37811 0.00036772 -1.9905 -0.0019358 -1.6124 -0.001568 972.5125656356032 49.204 0.14883 49.204 49.128 49.277 0 10 6 2 0 0 0 0.0083087 2 27057 27025;27057 97.075 51.054 1 1424900 7360 520 4956 5071 8606;8607 8607 0.020737848974818007 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7613525390625 2 486.761092 971.507631 0.89621 0.00043624 -0.03678 -1.7903E-05 0.85943 0.00041834 486.76082611748956 49.575 0.27378 49.183 49.04 49.313 -0.3923 29 13 3 0 0 0 0.058206 1 26641 26641 42.968 19.82 1 6311900 7361 520 4956 5071 8608 8608 0.020737848974818007 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7609252929688 2 486.761092 971.507631 0.65172 0.00031723 0.44154 0.00021492 1.0933 0.00053216 486.7611664676421 49.208 0.20522 49.164 49.07 49.275 -0.04369 19 9 3 0 0 0 0.058206 1 26595 26595 42.968 19.82 1 1828400 7362 520 4956 5071 8609 8609 0.020737848974818007 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7595520019531 2 486.761092 971.507631 1.1583 0.0005638 -0.28148 -0.00013701 0.87679 0.00042679 486.7609236726489 55.421 0.6203 49.5 49.241 49.861 -5.9211 97 37 4 0 0 0 0.034897 3 35129 35129;35269;35398 52.693 29.545 1 222480000 7363 520 4956 5071 8610;8611;8612 8610 0.020737848974818007 EAIGAVIHY 9 Unmodified _EAIGAVIHY_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5122680664062 1 972.514908 971.507631 0.85534 0.00083183 -1.5305 -0.0014885 -0.67521 -0.00065665 972.5123519876353 55.392 0.17952 49.471 49.393 49.573 -5.9211 16 10 2 0 0 0 0.0077963 1 35246 35246 109.63 65.222 1 5497700 7364 520 4956 5071 8613 8613 0.020737848974818007 EAIGIISKM 9 Unmodified _EAIGIISKM_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2742309570312 2 481.272978 960.531403 0.59618 0.00028693 0.14023 6.7487E-05 0.73641 0.00035441 481.2730824307236 53.75 0.19414 53.298 53.148 53.342 -0.45173 16 9 2 0 0 0 0.19361 1 29073 29073 23.79 7.9426 1 1840900 7365 418 4957 5072 8614 8614 0.04955882339629625 EAIGIISKM 9 Unmodified _EAIGIISKM_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2737121582031 2 481.272978 960.531403 0.95886 0.00046147 0.29184 0.00014046 1.2507 0.00060193 481.2732876509458 59.562 0.39444 53.448 53.271 53.665 -6.1147 43 21 3 0 0 0 0.017075 2 38227 38227;38367 66.457 24.362 1 43061000 7366 418 4957 5072 8615;8616 8615 0.04955882339629625 EAIGIISKM 9 Oxidation (M) _EAIGIISKM(Oxidation (M))_ EAIGIISKM(1) EAIGIISKM(66) 0 0 1 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2708129882812 2 489.270435 976.526318 0.70886 0.00034682 -0.11248 -5.5034E-05 0.59638 0.00029179 489.2708097691295 42.112 0.4919 37.427 37.186 37.678 -4.6846 51 30 2 0 0 0 0.017075 1 25479 25479 66.457 30.33 1 16990000 7367 418 4957 5073 8617 8617 50 0.03711578477020794 EAIKEELLY 9 Unmodified _EAIKEELLY_ 0 0 0 nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER nc|ENSG00000165983|Q96BW5-2|PTER nc|ENSG00000165983|Q96BW5-2|PTER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3009643554688 2 554.300247 1106.58594 0.49198 0.0002727 -0.1192 -6.6072E-05 0.37278 0.00020663 554.3000632188002 50.344 0.40658 50.344 50.134 50.54 0 55 18 4 0 0 0 0.0082548 2 27690 27690;27797 96.367 21.438 1 23447000 7368 7416 4958 5074 8618;8619 8618 0.03691172692060718 EAIKEELLY 9 Unmodified _EAIKEELLY_ 0 0 0 nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER nc|ENSG00000165983|Q96BW5-2|PTER nc|ENSG00000165983|Q96BW5-2|PTER MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3009033203125 2 554.300247 1106.58594 0.62711 0.0003476 0.28633 0.00015872 0.91344 0.00050632 554.3010136856035 56.645 0.41248 50.668 50.466 50.879 -5.9769 45 23 3 0 0 0 0.05483 1 36145 36145 43.772 1.9328 1 36184000 7369 7416 4958 5074 8620 8620 0.03691172692060718 EAIKIFNSL 9 Unmodified _EAIKIFNSL_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7996215820312 2 517.797675 1033.5808 0.08641 4.4743E-05 1.0425 0.00053981 1.1289 0.00058456 517.7985346376443 66.428 0.38599 65.945 65.744 66.13 -0.48323 46 19 3 0 0 0 0.070838 1 36258 36258 39.957 11.47 1 7941100 7370 5706 4959 5075 8621 8621 0.06534913620112093 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5605773925781 3 388.560535 1162.65977 -0.32167 -0.00012499 0.22353 8.6856E-05 -0.098141 -3.8134E-05 388.560567917226 40.619 0.32277 40.619 40.451 40.774 0 59 17 4 0 0 0 0.20771 2 21781 21781;21890 32.898 19.379 1 65667000 7371 1284 4960 5076 8622;8623 8622 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3367919921875 2 582.337164 1162.65977 -0.18333 -0.00010676 -0.74637 -0.00043464 -0.92969 -0.00054139 582.3367718401639 40.639 0.31939 40.639 40.471 40.79 0 48 17 4 0 0 0 3.1517E-05 2 21811 21811;21925 128.58 76.949 1 20188000 7372 1284 4960 5076 8624;8625 8624 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5604248046875 3 388.560535 1162.65977 0.30158 0.00011718 -0.43966 -0.00017084 -0.13808 -5.3653E-05 388.5602242450175 41.021 0.44338 40.718 40.543 40.986 -0.30304 67 21 5 0 0 0 0.38026 2 21661 21661;21765 22.775 13.231 1 69445000 7373 1284 4960 5076 8626;8627 8626 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3372802734375 2 582.337164 1162.65977 0.23723 0.00013815 -0.8577 -0.00049947 -0.62046 -0.00036132 582.3366367892211 41.04 0.40192 40.737 40.563 40.964 -0.30304 51 19 4 0 0 0 0.011983 1 21683 21683 68.76 40.265 1 17696000 7374 1284 4960 5076 8628 8628 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5605773925781 3 388.560535 1162.65977 0.34751 0.00013503 -0.40202 -0.00015621 -0.054507 -2.1179E-05 388.5606459794881 40.715 0.28711 40.72 40.571 40.858 0.0050545 32 13 3 0 0 0 0.56707 1 21707 21707 12.856 6.2256 1 7545400 7375 1284 4960 5076 8629 8629 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5609741210938 3 388.560535 1162.65977 0.96286 0.00037413 -0.0080129 -3.1135E-06 0.95485 0.00037102 388.56057846287035 45.535 0.53115 40.58 40.332 40.863 -4.9549 116 35 4 0 0 0 0.47059 3 28136 27844;27992;28136 17.863 10.386 1 332400000 7376 1284 4960 5076 8630;8631;8632 8632 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.337646484375 2 582.337164 1162.65977 0.59199 0.00034474 -0.23139 -0.00013475 0.3606 0.00020999 582.3368409497032 45.545 0.72865 40.59 40.363 41.091 -4.9549 138 48 4 0 0 0 0.01077 2 28004 27865;28004 70.929 41.088 1 170910000 7377 1284 4960 5076 8633;8634 8634 0.08495140854392957 EAIKILKGEY 10 Unmodified _EAIKILKGEY_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1;ENST00000470674.1_1_2:15763561-15768670:+|nuORF nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.337164 1162.65977 0.92671 0.00053966 -1.9686 -0.0011464 -1.0418 -0.00060671 582.3360296188646 40.702 0.20445 40.707 40.633 40.837 0.0050583 0.038523 -0.0014613 NaN 128.58 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2939000 7378 1284 4960 5076 0.08495140854392957 EAILSHPA 8 Unmodified _EAILSHPA_ 0 0 0 nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2266845703125 2 419.226885 836.439217 0.93202 0.00039073 -0.61769 -0.00025895 0.31432 0.00013177 419.2265065608177 79.53 0.46133 79.041 78.796 79.257 -0.48933 34 19 2 0 0 0 0.5284 1 43616 43616 32.117 0 1 1684600 7379 4955 4961 5077 8635 8635 0.014455403176043546 EAINVEQAF 9 Unmodified _EAINVEQAF_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7543334960938 2 510.753464 1019.49238 0.42192 0.0002155 0.97919 0.00050013 1.4011 0.00071562 510.7541814845267 58.219 0.77754 58.219 57.99 58.768 0 70 31 4 0 0 0 0.010818 2 32378 32378;32477 78.149 40.175 1 29970000 7380 1169 4962 5078 8636;8637 8636 -0.016591266903787982 EAIQLIINY 9 Unmodified _EAIQLIINY_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8043823242188 2 538.802957 1075.59136 0.95236 0.00051314 0.7866 0.00042382 1.739 0.00093696 538.8033857939075 88.858 0.61929 82.682 82.477 83.096 -6.1757 59 34 2 0 0 0 0.0090948 2 58676 58547;58676 85.272 20.332 1 28669000 7381 6854 4963 5079 8638;8639 8639 0.05658896274530889 EAIQQKIEY 9 Unmodified _EAIQQKIEY_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2955932617188 2 561.295496 1120.57644 -0.29249 -0.00016417 -0.49843 -0.00027977 -0.79092 -0.00044394 561.2952037796017 34.762 0.30508 34.762 34.614 34.919 0 42 15 4 0 0 0 0.0081887 1 18317 18317 93.166 17.405 1 18203000 7382 9284 4964 5080 8640 8640 0.02097404406526948 EAIQQKIEY 9 Unmodified _EAIQQKIEY_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 561.295496 1120.57644 0.91616 0.00051423 -1.6042 -0.00090045 -0.68807 -0.00038621 561.2947316322982 39.6 0.36345 35.149 34.946 35.31 -4.4509 0.19353 -0.00036493 NaN 93.166 55 22 3 NaN NaN NaN NaN 0 NaN NaN 0 48679000 7383 9284 4964 5080 0.02097404406526948 EAIQRTEAY 9 Unmodified _EAIQRTEAY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7702026367188 2 540.769645 1079.52474 -0.19334 -0.00010455 0.10034 5.4259E-05 -0.093004 -5.0294E-05 540.7696100875818 22.211 0.24305 22.211 22.102 22.345 0 16 11 2 0 0 0 0.033587 1 11287 11287 53.404 35.258 1 777870 7384 5929 4965 5081 8641 8641 -0.011843392873743142 EAIRDMVRY 9 Unmodified _EAIRDMVRY_ 0 0 0 ENSG00000143499|ENST00000366957|SMYD2;ENST00000491455.5_1_1:214454597-214505536:+|nuORF;ENST00000471645.5_1_1:214454597-214504559:+|nuORF ENSG00000143499|ENST00000366957|SMYD2 ENSG00000143499|ENST00000366957|SMYD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8654479980469 3 384.865852 1151.57573 1.2511 0.0004815 -0.36544 -0.00014064 0.88564 0.00034085 384.86569702695374 42.917 0.34294 38.233 38.055 38.398 -4.6846 53 21 3 0 0 0 0.19349 1 25942 25942 23.801 12.283 1 23523000 7385 5521 4966 5082 8642 8642 0.006002864858373869 EAIREAVVY 9 Unmodified _EAIREAVVY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2848510742188 2 525.284931 1048.55531 0.73946 0.00038843 -0.43499 -0.0002285 0.30447 0.00015993 525.284656884553 38.503 0.32979 38.503 38.352 38.682 0 37 19 2 0 0 0 0.012586 1 20563 20563 79.596 47.291 1 75090000 7386 1302 4967 5083 8643 8643 0.03297439097673305 EAIREAVVY 9 Unmodified _EAIREAVVY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.285400390625 2 525.284931 1048.55531 0.61019 0.00032052 -0.15854 -8.3276E-05 0.45165 0.00023725 525.2851884300982 43.987 0.49495 39.222 38.935 39.43 -4.7648 102 31 4 0 0 0 0.014182 2 26817 26683;26817 75.761 46.679 1 135470000 7387 1302 4967 5083 8644;8645 8645 0.03297439097673305 EAIRELNEY 9 Unmodified _EAIRELNEY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.782958984375 2 568.782753 1135.55095 0.73514 0.00041813 -0.58793 -0.00033441 0.1472 8.3726E-05 568.7825422375862 36.375 0.23825 36.375 36.249 36.487 0 23 11 3 0 0 0 0.0087807 1 19286 19286 106.94 55.31 1 7311800 7388 2204 4968 5084 8646 8646 -0.011400701159118398 EAIRISPTF 9 Unmodified _EAIRISPTF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2870483398438 2 517.287474 1032.5604 -0.19492 -0.00010083 0.12153 6.2865E-05 -0.073395 -3.7966E-05 517.2874981527272 55.272 0.4275 55.272 54.986 55.414 0 43 18 3 0 0 0 0.008513 2 30741 30639;30741 99.755 67.45 1 14373000 7389 5828 4969 5085 8647;8648 8648 0.04541742960282136 EAIRISPTF 9 Unmodified _EAIRISPTF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2883911132812 2 517.287474 1032.5604 -0.091258 -4.7207E-05 0.3589 0.00018565 0.26764 0.00013845 517.2875196759046 55.827 0.36834 55.349 55.132 55.5 -0.47798 72 17 5 0 0 0 0.0061223 2 30229 30229;30332 114.2 79.8 1 90525000 7390 5828 4969 5085 8649;8650 8649 0.04541742960282136 EAIRISPTF 9 Unmodified _EAIRISPTF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.288818359375 2 517.287474 1032.5604 0.021331 1.1034E-05 0.11712 6.0586E-05 0.13845 7.162E-05 517.2875820937572 55.454 0.21822 55.385 55.278 55.497 -0.068737 21 10 3 0 0 0 0.0086209 1 30137 30137 89.401 57.095 1 6862100 7391 5828 4969 5085 8651 8651 0.04541742960282136 EAIRISPTF 9 Unmodified _EAIRISPTF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2880249023438 2 517.287474 1032.5604 0.97655 0.00050516 0.17344 8.9717E-05 1.15 0.00059487 517.2874885728671 61.798 0.51449 55.622 55.309 55.823 -6.1757 68 26 3 0 0 0 0.0081887 3 39831 39699;39831;39967 99.755 67.45 1 328400000 7392 5828 4969 5085 8652;8653;8654 8653 0.04541742960282136 EAISEERLREM 11 Unmodified _EAISEERLREM_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8942260742188 3 454.894248 1361.66091 0.41771 0.00019001 -1.1378 -0.00051757 -0.72007 -0.00032755 454.89375396678344 20.142 0.16426 20.152 20.024 20.189 0.010553 24 7 4 0 0 0 0.70147 1 10230 10230 4.1166 0.52395 1 2378500 7393 6208 4970 5086 8655 8655 -0.005450128390293685 EAISRAIEEY 10 Unmodified _EAISRAIEEY_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7955322265625 2 590.79586 1179.57717 -0.49687 -0.00029355 0.66759 0.00039441 0.17072 0.00010086 590.7962346504266 41.324 0.2882 41.324 41.174 41.462 0 40 13 4 0 0 0 0.0062542 1 22238 22238 117.84 72.138 1 33185000 7394 8890 4971 5087 8656 8656 -0.005438009444333147 EAISRAIEEY 10 Unmodified _EAISRAIEEY_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2979125976562 2 590.79586 1179.57717 0.65354 0.00038611 -1.012 -0.00059789 -0.35846 -0.00021178 590.7951329168791 47.091 0.3396 42.011 41.886 42.225 -5.0805 47 27 2 0 0 0 0.0062542 2 29142 29142;29270 117.84 68.283 1 41074000 7395 8890 4971 5087 8657;8658 8657 -0.005438009444333147 EAISYYSKY 9 Unmodified _EAISYYSKY_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2731323242188 2 562.268947 1122.52334 0.60055 0.00033767 1.4943 0.00084022 2.0949 0.0011779 562.270497766746 36.907 0.2803 36.907 36.796 37.076 0 26 13 2 0 0 0 0.011671 1 19584 19584 75.761 43.455 1 4223900 7396 7643 4972 5088 8659 8659 -0.033019733761420866 EAKDGIGRNF 10 Unmodified _EAKDGIGRNF_ 0 0 0 ENST00000256079.8_1_12:30782134-30782350:-|nuORF ENST00000256079.8_1_12:30782134-30782350:-|nuORF ENST00000256079.8_1_12:30782134-30782350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7857055664062 2 553.783087 1105.55162 0.49443 0.00027381 0.1859 0.00010295 0.68033 0.00037676 553.7830370997575 35.931 0.33744 35.931 35.776 36.113 0 60 16 5 0 0 0 0.56348 1 19110 19110 13.042 2.2185 1 51752000 7397 11177 4973 5089 8660 8660 0.0030676932381084043 EAKFNPRATF 10 Unmodified _EAKFNPRATF_ 0 0 0 ENSG00000113649|ENST00000679501|TCERG1;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENST00000506524.5_1_5:145862104-145889630:+|nuORF ENSG00000113649|ENST00000679501|TCERG1 ENSG00000113649|ENST00000679501|TCERG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8109130859375 2 590.809105 1179.60366 0.97501 0.00057604 -0.039743 -2.3481E-05 0.93526 0.00055256 590.808992074963 19.791 0.33874 17.134 16.955 17.294 -2.6564 38 21 2 0 0 0 0.64628 1 10574 10574 8.7454 0 1 4134000 7398 2988 4974 5090 8661 8661 0.021039327375319772 EAKHAVSFM 9 Unmodified _EAKHAVSFM_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7716369628906 2 510.252577 1018.4906 0.36648 0.000187 3.2504 0.0016585 3.6169 0.0018455 510.7561726975833 66.847 0.098923 60.671 60.599 60.698 -6.1757 7 5 2 0 0 0 0.19891 1 43471 43471 11.64 9.3376 1 5194500 7399 5718 4975 5091 8662 8662 -0.017904589799854875 EAKIMEYK 8 Unmodified _EAKIMEYK_ 0 0 0 REV__EDRF1|p.T383A|1|0.19|ENSG00000107938|chr10:125733422-125733422|A/G|missense_variant REV__EDRF1|p.T383A|1|0.19|ENSG00000107938|chr10:125733422-125733422|A/G|missense_variant MSMS AL20221201_MKP_PDAC_01 4 506.2628479003906 2 506.26261 1010.51067 NaN NaN NaN NaN NaN NaN NaN 30.828 1 27.331 26.831 27.831 -3.497 0 0 0 0.88449 1 17425 17425 19.257 3.4098 1 + 7400 16915 4976 5092 8663 8663 0.0058329195995838745 EAKKIIFRK 9 Unmodified _EAKKIIFRK_ 0 0 0 ENST00000466974.5_1_20:5922633-5923195:-|nuORF ENST00000466974.5_1_20:5922633-5923195:-|nuORF ENST00000466974.5_1_20:5922633-5923195:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.864013671875 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 107.86 1 101.68 101.18 102.18 -6.1757 0 0 0 0.85737 1 72114 72114 0.6015 0 1 7401 13765 4977 5093 8664 8664 0.1522256342768742 EAKLRDNEAKL 11 Unmodified _EAKLRDNEAKL_ 0 0 0 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8598022460938 2 643.856783 1285.69901 0.34987 0.00022527 2.7277 0.0017563 3.0776 0.0019815 643.8588954685526 88.983 0.20855 89.031 88.864 89.073 0.047859 10 7 2 0 0 0 0.21511 1 49505 49505 31.268 2.7738 1 9841500 + 7402 17425 4978 5094 8665 8665 0.06759241137933714 EAKRHFLF 8 Unmodified _EAKRHFLF_ 0 0 0 REV__ENST00000589953.1_1_19:36562547-36565998:+|nuORF REV__ENST00000589953.1_1_19:36562547-36565998:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.290771484375 2 524.290351 1046.56615 NaN NaN NaN NaN NaN NaN NaN 59.096 1 59.096 58.596 59.596 0 0 0 0 0.9706 1 32919 32919 6.3541 0.59368 1 + 7403 17575 4979 5095 8666 8666 0.04472886262601605 EAKRYKIY 8 Unmodified _EAKRYKIY_ 0 0 0 nc|ENSG00000080200|Q68DQ2-1|CRYBG3;ENSG00000080200|ENST00000389622|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5379943847656 3 357.537953 1069.59203 -0.27062 -9.6757E-05 0.77684 0.00027775 0.50622 0.00018099 357.53814635398123 41.887 0.6469 41.878 41.395 42.042 -0.0088196 44 30 2 0 0 0 0.80763 1 22337 22337 1.3295 0.36726 1 15109000 7404 1294 4980 5096 8667 8667 0.06001735714221468 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7632141113281 2 475.7633 949.512048 -0.096621 -4.5969E-05 -0.2358 -0.00011219 -0.33242 -0.00015815 475.7625108368452 71.412 0.48325 71.412 71.251 71.734 0 39 23 3 0 0 0 0.026094 1 39780 39780 57.471 21.427 1 2195500 7405 5085 4981 5097 8668 8668 0.03527249320370629 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.5184326171875 1 950.519325 949.512048 -0.67865 -0.00064507 -0.11911 -0.00011321 -0.79775 -0.00075828 950.5190197101574 71.433 0.44771 71.433 71.251 71.699 0 51 21 3 0 0 0 0.047196 1 39814 39814 46.021 11.919 1 4012800 7406 5085 4981 5097 8669 8669 0.03527249320370629 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 950.5220336914062 1 950.519325 949.512048 0.47161 0.00044827 0.71458 0.00067922 1.1862 0.0011275 950.5196613042931 71.888 0.30035 71.412 71.293 71.594 -0.47609 23 11 3 0 0 0 0.10734 1 39322 39322 32.305 10.559 1 1122500 7407 5085 4981 5097 8670 8670 0.03527249320370629 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7620544433594 2 475.7633 949.512048 0.6658 0.00031676 -0.80757 -0.00038421 -0.14177 -6.7447E-05 475.76219105415555 71.931 0.36966 71.455 71.266 71.636 -0.47609 23 14 3 0 0 0 0.038285 1 39364 39364 50.855 22.368 1 989370 7408 5085 4981 5097 8671 8671 0.03527249320370629 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.5184936523438 1 950.519325 949.512048 1.1512 0.0010942 0.66577 0.00063283 1.817 0.0017271 950.518971223203 79.482 0.23978 73.307 73.095 73.335 -6.1757 19 13 2 0 0 0 0.047196 1 52029 52029 46.021 3.9264 1 11380000 7409 5085 4981 5097 8672 8672 0.03527249320370629 EALAAVLTY 9 Unmodified _EALAAVLTY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MSMS AL20221201_MKP_PDAC_01 4 475.7638549804688 2 475.7633 949.512048 NaN NaN NaN NaN NaN NaN NaN 79.414 1 73.239 72.739 73.739 -6.1757 0 0 0 0.071041 1 52037 52037 50.855 22.368 1 7410 5085 4981 5097 8673 8673 0.03527249320370629 EALAGDVAF 9 Unmodified _EALAGDVAF_ 0 0 0 ENSG00000101493|ENST00000443185|ZNF516 ENSG00000101493|ENST00000443185|ZNF516 ENSG00000101493|ENST00000443185|ZNF516 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 892.4393920898438 1 892.441074 891.433798 0.1336 0.00011923 -0.5822 -0.00051958 -0.4486 -0.00040035 892.4408118693075 59.092 0.2335 59.092 58.984 59.217 0 16 9 2 0 0 0 0.06187 1 32912 32912 42.095 18.946 1 788700 7411 1973 4982 5098 8674 8674 -0.016261832648524432 EALAGLLVTY 10 Unmodified _EALAGLLVTY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.298828125 2 525.297507 1048.58046 1.0903 0.00057271 0.83247 0.0004373 1.9227 0.00101 525.2978026852228 95.133 0.49623 88.957 88.592 89.089 -6.1757 36 27 2 0 0 0 0.18021 2 62833 62833;62997 36.127 5.4905 1 6780000 7412 4022 4983 5099 8675;8676 8675 0.058114939002507526 EALALFLMF 9 Unmodified _EALALFLMF_ 0 0 0 REV__ENST00000534751.2_1_11:45235120-45235297:+|nuORF REV__ENST00000534751.2_1_11:45235120-45235297:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.7887573242188 2 527.785721 1053.55689 NaN NaN NaN NaN NaN NaN NaN 81.159 1 74.983 74.483 75.483 -6.1757 0 0 0 0.46757 1 53259 53259 16.942 0.79319 1 + 7413 28507 4984 5100 8677 8677 0.03225356862071749 EALALQASL 9 Unmodified _EALALQASL_ 0 0 0 ENSG00000013810|ENST00000313288|TACC3;ENST00000484264.1_1_4:1746256-1746676:+|nuORF ENSG00000013810|ENST00000313288|TACC3 ENSG00000013810|ENST00000313288|TACC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2608032226562 2 458.260925 914.507297 0.53281 0.00024417 -0.025994 -1.1912E-05 0.50682 0.00023225 458.26093463671765 63.657 0.66874 63.657 63.499 64.168 0 41 27 3 0 0 0 0.013323 2 35471 35471;35570 71.134 26.727 1 2302000 7414 482 4985 5101 8678;8679 8678 0.04662365177614447 EALALTQTW 9 Unmodified _EALALTQTW_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7716064453125 2 516.771657 1031.52876 0.38921 0.00020113 0.046554 2.4058E-05 0.43576 0.00022519 516.771438533883 69.154 0.43861 69.154 68.888 69.326 0 46 19 3 0 0 0 0.038285 2 38555 38452;38555 50.855 27.707 1 5057600 7415 10306 4986 5102 8680;8681 8681 0.014257502063173888 EALALTQTW 9 Unmodified _EALALTQTW_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.771240234375 2 516.771657 1031.52876 -0.18031 -9.3181E-05 1.4008 0.00072389 1.2205 0.00063071 516.7722583442371 69.619 0.48468 69.14 68.829 69.314 -0.47903 46 20 3 0 0 0 0.031062 2 38018 38018;38127 54.774 31.625 1 4739900 7416 10306 4986 5102 8682;8683 8682 0.014257502063173888 EALALTQTW 9 Unmodified _EALALTQTW_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.772705078125 2 516.771657 1031.52876 0.40634 0.00020998 2.0944 0.0010823 2.5007 0.0012923 516.7717719676516 76.629 0.68365 70.453 70.076 70.759 -6.1757 74 36 3 0 0 0 0.016184 2 50055 50055;50175 67.344 37.119 1 40534000 7417 10306 4986 5102 8684;8685 8684 0.014257502063173888 EALAVLTSF 9 Unmodified _EALAVLTSF_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 950.518310546875 1 950.519325 949.512048 0.41944 0.00039868 -1.2553 -0.0011932 -0.83584 -0.00079448 950.5183189566561 85.105 0.22176 84.604 84.46 84.682 -0.5015 24 11 3 0 0 0 0.07916 1 46521 46521 37.974 5.6685 1 1812500 7418 5174 4987 5103 8686 8686 0.03527249320370629 EALAVLTSF 9 Unmodified _EALAVLTSF_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7633666992188 2 475.7633 949.512048 0.61299 0.00029164 -0.23812 -0.00011329 0.37487 0.00017835 475.76290472349353 85.115 0.29863 84.614 84.434 84.732 -0.5015 23 15 2 0 0 0 0.038285 1 46532 46532 50.855 14.811 1 1394600 7419 5174 4987 5103 8687 8687 0.03527249320370629 EALAVLTSF 9 Unmodified _EALAVLTSF_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MSMS AL20221201_MKP_PDAC_01 4 475.7640075683594 2 475.7633 949.512048 NaN NaN NaN NaN NaN NaN NaN 93.78 1 87.605 87.105 88.105 -6.1757 0 0 0 0.080768 1 62093 62093 48.346 14.243 1 7420 5174 4987 5103 8688 8688 0.03527249320370629 EALCQPSEY 9 Carbamidomethyl (C) _EALC(Carbamidomethyl (C))QPSEY_ EALC(1)QPSEY EALC(46)QPSEY 0 1 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7294921875 2 548.734414 1095.45428 -0.34059 -0.00018689 -2.3491 -0.001289 -2.6897 -0.0014759 548.7316179954092 34.614 0.13462 34.614 34.56 34.695 0 15 6 3 0 0 0 0.047196 1 18264 18264 46.021 25.567 1 1835300 7421 357 4988 5104 8689 8689 17 -0.08963380667364618 EALDAAIEY 9 Unmodified _EALDAAIEY_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.471435546875 1 994.472768 993.465492 0.24603 0.00024467 -0.17053 -0.00016958 0.075503 7.5086E-05 994.472404596035 54.828 0.20262 54.828 54.741 54.944 0 10 8 2 0 0 0 0.042911 1 30469 30469 48.346 21.462 1 1317500 7422 7533 4989 5105 8690 8690 -0.0315023530158669 EALDELTP 8 Unmodified _EALDELTP_ 0 0 0 REV__nc|ENSG00000163565|Q16666-3|IFI16 REV__nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2196044921875 2 444.221465 886.428378 0.23263 0.00010334 0.85207 0.00037851 1.0847 0.00048185 444.22180546660246 46.912 0.75314 46.912 46.718 47.471 0 100 35 4 0 0 0 0.75262 1 25943 25943 12.532 0 1 218850000 + 7423 21786 4990 5106 8691 8691 -0.019379068473313055 EALDHMVEY 9 Oxidation (M) _EALDHM(Oxidation (M))VEY_ EALDHM(1)VEY EALDHM(93)VEY 0 0 1 nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7423706054688 2 561.742239 1121.46993 -0.83629 -0.00046978 -0.061827 -3.4731E-05 -0.89812 -0.00050451 561.7424924812658 32.26 0.34784 32.26 32.084 32.432 0 80 17 6 0 0 0 0.0082281 2 16780 16780;16892 92.822 60.705 1 97282000 7424 2307 4991 5107 8692;8693 8692 397 -0.08595094150291516 EALDHMVEY 9 Oxidation (M) _EALDHM(Oxidation (M))VEY_ EALDHM(1)VEY EALDHM(74)VEY 0 0 1 nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7430419921875 2 561.742239 1121.46993 1.4151 0.00079492 -0.83365 -0.0004683 0.58144 0.00032662 561.7421016498344 37.25 0.74857 32.966 32.557 33.306 -4.2835 141 45 4 0 0 0 0.012148 3 21813 21685;21813;21938 74.423 58.576 1 113700000 7425 2307 4991 5107 8694;8695;8696 8695 397 -0.08595094150291516 EALDHMVEY 9 Unmodified _EALDHMVEY_ 0 0 0 nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7450561523438 2 553.744782 1105.47501 NaN NaN NaN NaN NaN NaN NaN 45.52 1 45.52 45.02 46.02 0 0 0 0 0.043758 1 24821 24821 60.39 37.241 1 7426 2307 4991 5108 8697 8697 -0.07350790287682685 EALDHMVEY 9 Unmodified _EALDHMVEY_ 0 0 0 nc|ENSG00000105355|O60664-2|PLIN3;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 nc|ENSG00000105355|O60664-2|PLIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7447509765625 2 553.744782 1105.47501 0.60868 0.00033705 -0.77363 -0.00042839 -0.16495 -9.1338E-05 553.7447473281773 52.186 0.45706 46.452 46.234 46.691 -5.7345 49 28 2 0 0 0 0.023164 2 32840 32840;32972 60.39 32.216 1 194040000 7427 2307 4991 5108 8698;8699 8698 -0.07350790287682685 EALDVIVSL 9 Unmodified _EALDVIVSL_ 0 0 0 nc|ENSG00000136193|Q12765-2|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-3|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7763977050781 2 479.776408 957.538263 1.3383 0.00064208 0.62728 0.00030095 1.9656 0.00094304 479.77646250263774 96.022 0.6527 89.846 89.416 90.069 -6.1757 50 40 2 0 0 0 0.042911 2 63618 63483;63618 48.346 14.243 1 10539000 7428 4797 4992 5109 8700;8701 8701 0.057795184918632 EALEDLVGF 9 Unmodified _EALEDLVGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4937744140625 1 992.493504 991.486227 -0.011668 -1.158E-05 0.21527 0.00021366 0.20361 0.00020208 992.4937187569711 84.265 0.28843 84.265 84.134 84.422 0 27 15 2 0 0 0 0.16226 2 46684 46684;46783 26.884 11.036 1 950070 7429 5963 4993 5110 8702;8703 8702 -0.009856449218887064 EALEDLVGF 9 Unmodified _EALEDLVGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7505798339844 2 496.75039 991.486227 0.24449 0.00012145 0.67254 0.00033409 0.91703 0.00045554 496.75067579834285 84.306 0.42468 84.306 84.089 84.514 0 63 21 4 0 0 0 0.013472 1 46755 46755 70.716 47.567 1 4122000 7430 5963 4993 5110 8704 8704 -0.009856449218887064 EALEHLCTY 9 Carbamidomethyl (C) _EALEHLC(Carbamidomethyl (C))TY_ EALEHLC(1)TY EALEHLC(100)TY 0 1 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2572631835938 2 568.258056 1134.50156 0.68873 0.00039138 -1.3423 -0.00076279 -0.6536 -0.00037141 568.2575980669726 44.868 0.41545 40.016 39.801 40.216 -4.852 97 29 5 0 0 0 0.00856 2 27322 27322;27455 100.37 69.735 1 90069000 7431 7146 4994 5111 8705;8706 8705 698 -0.060311013963428195 EALEKEFER 9 Unmodified _EALEKEFER_ 0 0 0 nc|ENSG00000007372|P26367|PAX6;ENSG00000007372|ENST00000640368|PAX6;chr11:31811015-31817809|126|10.42|0.6|4.11|-|ENST00000638914|PAX6,PAX6 nc|ENSG00000007372|P26367|PAX6 nc|ENSG00000007372|P26367|PAX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1973266601562 3 384.196144 1149.5666 0.58041 0.00022299 2.0026 0.0007694 2.583 0.00099239 384.19727879362665 14.494 0.046095 11.991 11.959 12.005 -2.5029 9 6 2 0 0 0 0.55144 1 7371 7371 2.4985 0 1 1507300 7432 70 4995 5112 8707 8707 -0.002197835988681618 EALELINGY 9 Unmodified _EALELINGY_ 0 0 0 ENSG00000127445|ENST00000247970|PIN1;ENST00000380889.6_1_19:9947469-9960242:+|nuORF ENSG00000127445|ENST00000247970|PIN1 ENSG00000127445|ENST00000247970|PIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.263427734375 2 511.263665 1020.51278 0.49312 0.00025212 0.62012 0.00031704 1.1132 0.00056916 511.2629442595439 66.576 0.28201 66.576 66.397 66.679 0 17 12 2 0 0 0 0.2001 1 37179 37179 23.148 10.617 1 1216800 7433 4008 4996 5113 8708 8708 0.003340439694397901 EALESLVY 8 Unmodified _EALESLVY_ 0 0 0 REV__ENST00000468491.1_1_X:153073542-153095123:-|nuORF REV__ENST00000468491.1_1_X:153073542-153095123:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 923.47216796875 1 923.47204 922.464763 0.22777 0.00021034 0.29382 0.00027133 0.52159 0.00048167 923.4723401734599 63.05 0.30071 63.05 62.846 63.146 0 26 12 3 0 0 0 0.79669 1 35219 35219 8.5933 0 1 2116300 + 7434 27454 4997 5114 8709 8709 0.00042970049389623455 EALESSHLE 9 Unmodified _EALESSHLE_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7412719726562 2 507.740554 1013.46655 0.39518 0.00020065 1.3043 0.00066225 1.6995 0.0008629 507.7413095260923 84.276 0.27297 84.276 84.149 84.422 0 18 14 2 0 0 0 0.5029 1 46705 46705 7.2892 2.3922 1 374870 7435 3920 4998 5115 8710 8710 -0.039640209326535114 EALFHLFSLTH 11 Unmodified _EALFHLFSLTH_ 0 0 0 ENSG00000162378|ENST00000294353|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.84375 2 657.845687 1313.67682 -0.026972 -1.7743E-05 0.38815 0.00025534 0.36118 0.0002376 657.8456778657402 85.68 0.20876 85.68 85.559 85.768 0 16 8 2 0 0 0 0.7326 1 47456 47456 1.1933 0 1 331620 7436 6851 4999 5116 8711 8711 0.0325306146019102 EALGPLQSF 9 Unmodified _EALGPLQSF_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2538757324219 2 481.2531 960.491647 -0.12324 -5.9308E-05 1.399 0.00067325 1.2757 0.00061394 481.25363512180144 71.085 0.4817 71.085 70.882 71.363 0 52 23 3 0 0 0 0.008678 2 39639 39545;39639 88.904 38.049 1 3480900 7437 9829;10450;9920 5000 5117 8712;8713 8713 0.00982078660570096 EALGPLQSF 9 Unmodified _EALGPLQSF_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2536315917969 2 481.2531 960.491647 0.63411 0.00030517 0.89836 0.00043234 1.5325 0.00073751 481.2534350662401 71.653 0.47755 71.177 70.886 71.363 -0.4761 47 19 3 0 0 0 0.10734 1 39234 39234 32.305 0.18852 1 1966100 7438 9829;10450;9920 5000 5117 8714 8714 0.00982078660570096 EALHEALLEY 10 Unmodified _EALHEALLEY_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.3028564453125 2 594.300778 1186.587 -0.38518 -0.00022892 -0.90375 -0.0005371 -1.2889 -0.00076601 594.3001389683267 55.259 0.3848 55.259 55.005 55.389 0 47 16 4 0 0 0 0.052718 2 30644 30644;30760 78.149 47.513 1 6255800 7439 8291 5001 5118 8715;8716 8715 0.001173870609363803 EALKEELLF 9 Unmodified _EALKEELLF_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.302734375 2 546.30279 1090.59103 0.45786 0.00025013 -0.30631 -0.00016734 0.15155 8.2793E-05 546.3025228458532 66.906 0.78004 66.906 66.679 67.459 0 117 34 5 0 0 0 0.010611 2 37252 37252;37359 78.728 28.795 1 122670000 7440 2759;14947 5002 5119 8717;8718 8717 0.04935476554669549 EALKEELLF 9 Unmodified _EALKEELLF_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3026123046875 2 546.30279 1090.59103 NaN NaN NaN NaN NaN NaN NaN 67.298 1 66.816 66.316 67.316 -0.48218 0 0 0 0.10759 1 36764 36764 41.84 0 1 7441 2759;14947 5002 5119 8719 8719 0.04935476554669549 EALKEELLF 9 Unmodified _EALKEELLF_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3037109375 2 546.30279 1090.59103 1.061 0.00057961 -0.42443 -0.00023187 0.63653 0.00034774 546.3027243670618 71.512 0.79581 65.336 64.985 65.781 -6.1757 116 41 4 0 0 0 0.094149 2 46664 46664;46780 34.402 0 1 163970000 7442 2759;14947 5002 5119 8720;8721 8720 0.04935476554669549 EALKEELLF 9 Unmodified _EALKEELLF_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.30224609375 2 546.30279 1090.59103 0.20343 0.00011114 -0.35442 -0.00019362 -0.15099 -8.2486E-05 546.3027446962496 76.743 0.83559 70.567 70.316 71.152 -6.1757 68 45 2 0 0 0 0.01958 2 50206 50206;50329 63.961 11.692 1 20773000 7443 2759;14947 5002 5119 8722;8723 8722 0.04935476554669549 EALKEFSMM 9 2 Oxidation (M) _EALKEFSM(Oxidation (M))M(Oxidation (M))_ EALKEFSM(1)M(1) EALKEFSM(63)M(63) 0 0 2 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2487182617188 2 559.248843 1116.48313 -0.040819 -2.2828E-05 -1.087 -0.00060792 -1.1278 -0.00063075 559.2483965050442 30.838 0.42387 30.838 30.607 31.031 0 32 20 3 0 0 0 0.020973 1 16058 16058 62.573 38.552 1 2660800 7444 9990 5003 5120 8724 8724 1614;1615 -0.07044979362558479 EALKEFSMMF 10 Unmodified _EALKEFSMMF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7900390625 2 616.788135 1231.56172 1.1185 0.00068989 1.011 0.00062354 2.1295 0.0013134 616.7885406341891 96.789 0.16946 90.614 90.523 90.693 -6.1757 17 9 2 0 0 0 0.038363 1 64132 64132 63.961 39.94 1 13446000 7445 9990 5004 5121 8725 8725 -0.0448012705749079 EALKEKLEHQY 11 Unmodified _EALKEKLEHQY_ 0 0 0 nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.24658203125 3 463.245386 1386.71433 0.14036 6.5022E-05 0.01402 6.4946E-06 0.15438 7.1516E-05 463.57955303031673 24.806 0.22534 24.806 24.678 24.904 0 22 10 3 0 0 0 0.29431 1 12687 12687 27.088 22.041 1 1617900 7446 7512 5005 5122 8726 8726 0.03644107935133434 EALKEKLEHQY 11 Unmodified _EALKEKLEHQY_ 0 0 0 nc|ENSG00000166579|Q9GZM8-3|NDEL1;ENSG00000166579|ENST00000334527|NDEL1;nc|ENSG00000166579|Q9GZM8-2|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 nc|ENSG00000166579|Q9GZM8-3|NDEL1 MSMS AL20221201_MKP_PDAC_01 4 463.245361328125 3 463.245386 1386.71433 NaN NaN NaN NaN NaN NaN NaN 27.812 1 24.671 24.171 25.171 -3.1416 0 0 0 0.090825 1 15447 15447 52.193 40.018 1 7447 7512 5005 5122 8727 8727 0.03644107935133434 EALKKLDI 8 Unmodified _EALKKLDI_ 0 0 0 REV__ENST00000465368.5_1_3:100064894-100074109:+|nuORF REV__ENST00000465368.5_1_3:100064894-100074109:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2865905761719 2 465.286943 928.559333 1.027 0.00047785 -0.40401 -0.00018798 0.62298 0.00028987 465.28667174117265 47.583 0.23575 47.583 47.45 47.686 0 17 10 2 0 0 0 0.76266 1 26046 26046 11.64 0 1 2054300 + 7448 18901 5006 5123 8728 8728 0.09219528591370363 EALKMALSF 9 Oxidation (M) _EALKM(Oxidation (M))ALSF_ EALKM(1)ALSF EALKM(48)ALSF 0 0 1 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80010993-80011926:+|nuORF ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2704467773438 2 513.270435 1024.52632 0.26073 0.00013382 0.22901 0.00011754 0.48974 0.00025137 513.2705040326081 52.88 0.33146 52.429 52.299 52.631 -0.45173 23 16 2 0 0 0 0.044011 1 28583 28583 47.749 15.443 1 2595300 7449 7907 5007 5124 8729 8729 1345 0.015035784770361715 EALKSHIM 8 Oxidation (M) _EALKSHIM(Oxidation (M))_ EALKSHIM(1) EALKSHIM(96) 0 0 1 ENSG00000150753|ENST00000280326|CCT5;ENST00000510326.5_1_5:10250452-10254343:+|nuORF;ENST00000508451.1_1_5:10250422-10254994:+|nuORF ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.746826171875 2 472.747127 943.479702 -0.38487 -0.00018195 -0.34023 -0.00016084 -0.7251 -0.00034279 472.74709192440474 16.591 0.46856 16.591 16.351 16.819 0 278 123 3 0 0 0 0.11214 2 8175 8076;8175 96.111 42.535 1 5387400 7450 6071 5008 5125 8730;8731 8731 1077 0.0057013864575310436 EALKSHIM 8 Oxidation (M) _EALKSHIM(Oxidation (M))_ EALKSHIM(1) EALKSHIM(85) 0 0 1 ENSG00000150753|ENST00000280326|CCT5;ENST00000510326.5_1_5:10250452-10254343:+|nuORF;ENST00000508451.1_1_5:10250422-10254994:+|nuORF ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7474060058594 2 472.747127 943.479702 0.47035 0.00022236 0.11216 5.3025E-05 0.58251 0.00027538 472.74723489899986 17.749 0.53117 15.162 14.961 15.492 -2.5866 149 59 3 0 0 0 0.15594 3 9302 9197;9302;9410 85.272 33.004 1 16523000 7451 6071 5008 5125 8732;8733;8734 8733 1077 0.0057013864575310436 EALKSHIM 8 Unmodified _EALKSHIM_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;ENST00000510326.5_1_5:10250452-10254343:+|nuORF;ENST00000508451.1_1_5:10250422-10254994:+|nuORF ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7498779296875 2 464.74967 927.484787 0.47789 0.0002221 -1.2299 -0.00057161 -0.75204 -0.00034951 464.7491358616249 27.105 0.38651 24.069 23.893 24.28 -3.0365 50 19 3 0 0 0 0.22167 1 15000 15000 66.457 32.055 1 73644000 7452 6071 5008 5126 8735 8735 0.018144425083619353 EALKSHRV 8 Unmodified _EALKSHRV_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2725830078125 2 470.272158 938.529764 0.35839 0.00016854 0.74778 0.00035166 1.1062 0.0005202 470.2726064429892 37.949 0.24271 37.949 37.786 38.028 0 27 11 3 0 0 0 0.66338 1 20186 20186 20.454 0 1 4786900 + 7453 17908 5009 5127 8736 8736 0.05804009365908769 EALKSHRV 8 Unmodified _EALKSHRV_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2720336914062 2 470.272158 938.529764 0.047023 2.2114E-05 0.50704 0.00023845 0.55406 0.00026056 470.2725235951686 38.108 0.20774 37.836 37.761 37.969 -0.27133 20 9 3 0 0 0 0.66338 1 20059 20059 20.454 0 1 2119600 + 7454 17908 5009 5127 8737 8737 0.05804009365908769 EALKSHRV 8 Unmodified _EALKSHRV_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.272158 938.529764 0.35839 0.00016854 0.74778 0.00035166 1.1062 0.0005202 470.2726064429892 37.949 0.24271 37.949 37.786 38.028 0 0.056384 6.1614E-05 NaN 20.454 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4786900 + 7455 17908 5009 5127 0.05804009365908769 EALKSVIDY 9 Unmodified _EALKSVIDY_ 0 0 0 nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF nc|ENSG00000243414|Q86XR7-2|TICAM2 nc|ENSG00000243414|Q86XR7-2|TICAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2798461914062 2 519.279315 1036.54408 0.67799 0.00035207 -0.11389 -5.9141E-05 0.5641 0.00029293 519.2792521970994 47.463 0.35059 47.463 47.25 47.601 0 46 15 4 0 0 0 0.0082981 1 25947 25947 96.936 37.567 1 25103000 7456 16574 5010 5128 8738 8738 0.027266170035318282 EALKSVIDY 9 Unmodified _EALKSVIDY_ 0 0 0 nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7;ENST00000514548.1_1_5:114952016-114952166:-|nuORF;ENST00000503010.1_1_5:114951908-114961566:-|nuORF nc|ENSG00000243414|Q86XR7-2|TICAM2 nc|ENSG00000243414|Q86XR7-2|TICAM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2561645507812 2 519.279315 1036.54408 1.2921 0.00067096 -1.1285 -0.000586 0.1636 8.4955E-05 519.2783743869309 53.705 0.29355 47.901 47.772 48.066 -5.8042 32 18 2 0 0 0 0.18882 1 33936 33936 10.824 1.4765 1 33456000 7457 16574 5010 5128 8739 8739 0.027266170035318282 EALLELQAY 9 Unmodified _EALLELQAY_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2798461914062 2 525.279315 1048.54408 0.66209 0.00034778 -0.30722 -0.00016138 0.35487 0.00018641 525.2792616336416 72.789 0.4413 72.789 72.564 73.005 0 39 21 2 0 0 0 0.013472 2 40553 40454;40553 70.716 32.742 1 6340500 7458 289 5011 5129 8740;8741 8741 0.02174617003538515 EALMYHTHF 9 Unmodified _EALMYHTHF_ 0 0 0 nc|ENSG00000182158|Q70SY1-3|CREB3L2;nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.76416015625 2 574.763309 1147.51206 0.88752 0.00051012 0.40326 0.00023178 1.2908 0.0007419 574.7631264339863 47.636 0.48835 47.636 47.427 47.916 0 79 22 4 0 0 0 0.2143 1 26141 26141 21.747 2.3076 1 18270000 7459 9024 5012 5130 8742 8742 -0.05579073951275859 EALMYHTHF 9 Unmodified _EALMYHTHF_ 0 0 0 nc|ENSG00000182158|Q70SY1-3|CREB3L2;nc|ENSG00000182158|Q70SY1-2|CREB3L2;ENSG00000182158|ENST00000330387|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 nc|ENSG00000182158|Q70SY1-3|CREB3L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.763309 1147.51206 0.7072 0.00040647 -0.69811 -0.00040125 0.0090883 5.2236E-06 574.7629785604465 48.014 0.55762 47.661 47.347 47.905 -0.3526 0.017569 -0.0005318 NaN 21.747 96 27 4 NaN NaN NaN NaN 0 NaN NaN 0 61831000 7460 9024 5012 5130 -0.05579073951275859 EALNAAQIF 9 Unmodified _EALNAAQIF_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7582702636719 2 488.758549 975.502546 0.37297 0.00018229 -0.68365 -0.00033414 -0.31067 -0.00015184 488.7583006597631 67.822 0.35167 67.822 67.656 68.008 0 43 16 4 0 0 0 0.06294 1 37779 37779 41.84 5.7126 1 4226500 7461 10109 5013 5131 8743 8743 0.013814810348549145 EALNAAQIF 9 Unmodified _EALNAAQIF_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.758549 975.502546 0.65342 0.00031937 1.8786 0.00091819 2.532 0.0012376 488.75882851579934 68.308 0.2217 67.827 67.745 67.967 -0.48071 0.0026315 0.0020479 NaN 41.84 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 901640 7462 10109 5013 5131 0.013814810348549145 EALNLATEF 9 Unmodified _EALNLATEF_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2564086914062 2 504.25584 1006.49713 0.1649 8.3153E-05 0.66103 0.00033333 0.82594 0.00041648 504.2563086355227 70.884 0.75887 70.884 70.707 71.466 0 103 60 2 0 0 0 0.0090948 1 39538 39538 85.272 23.915 1 10002000 7463 4022;16177 5014 5132 8744 8744 -0.005862425476038879 EALNLPEVARY 11 Unmodified _EALNLPEVARY_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.8405151367188 2 637.840602 1273.66665 NaN NaN NaN NaN NaN NaN NaN 59.679 1 59.679 59.179 60.179 0 0 0 0 0.023333 1 33261 33261 70.929 30.689 1 7464 2677 5015 5133 8745 8745 0.04076453734955976 EALNLPEVARY 11 Unmodified _EALNLPEVARY_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.84130859375 2 637.840602 1273.66665 NaN NaN NaN NaN NaN NaN NaN 60.407 1 59.916 59.416 60.416 -0.49079 0 0 0 0.57923 1 32895 32895 21.59 6.7519 1 7465 2677 5015 5133 8746 8746 0.04076453734955976 EALNLPEVARY 11 Unmodified _EALNLPEVARY_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.3137817382812 2 637.840602 1273.66665 -0.24158 -0.00015409 0.57224 0.000365 0.33066 0.00021091 637.8406039484429 60.318 0.17919 59.827 59.726 59.906 -0.49079 14 8 2 0 0 0 0.29807 1 32810 32810 8.9762 3.2444 1 2006200 7466 2677 5015 5133 8747 8747 0.04076453734955976 EALNLPEVARY 11 Unmodified _EALNLPEVARY_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MSMS AL20221201_MKP_PDAC_01 4 637.840087890625 2 637.840602 1273.66665 NaN NaN NaN NaN NaN NaN NaN 66.176 1 60 59.5 60.5 -6.1757 0 0 0 0.00049278 1 43028 43028 84.522 42.21 1 7467 2677 5015 5133 8748 8748 0.04076453734955976 EALPGDNVGF 10 Unmodified _EALPGDNVGF_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7456970214844 2 509.745639 1017.47673 -0.15046 -7.6697E-05 0.25782 0.00013142 0.10736 5.4726E-05 509.74563547255696 56.111 0.25056 56.111 55.953 56.204 0 24 11 3 0 0 0 0.27276 1 31213 31213 29.082 7.3349 1 3351900 7468 1933;6461 5016 5134 8749 8749 -0.0313141320741579 EALPRAAVY 9 Unmodified _EALPRAAVY_ 0 0 0 nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 nc|ENSG00000003400|Q92851-5|CASP10 MSMS AL20221201_MKP_PDAC_01 4 495.2743225097656 2 495.274367 988.53418 NaN NaN NaN NaN NaN NaN NaN 44.04 1 39.275 38.775 39.775 -4.7648 0 0 0 0.028486 1 26833 26833 68.081 32.037 1 7469 16007 5017 5135 8750 8750 0.03945473788792242 EALPSRVSF 9 Unmodified _EALPSRVSF_ 0 0 0 ENST00000455773.7_1_10:12238257-12240732:+|nuORF ENST00000455773.7_1_10:12238257-12240732:+|nuORF ENST00000455773.7_1_10:12238257-12240732:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2702941894531 2 503.271824 1004.5291 0.21447 0.00010793 -0.41404 -0.00020838 -0.19958 -0.00010044 503.27158620734764 48.304 0.39953 48.304 48.092 48.491 0 36 19 2 0 0 0 0.12424 1 26369 26369 30.637 3.7529 1 61592000 7470 13590 5018 5136 8751 8751 0.027011699261947797 EALPSRVSF 9 Unmodified _EALPSRVSF_ 0 0 0 ENST00000455773.7_1_10:12238257-12240732:+|nuORF ENST00000455773.7_1_10:12238257-12240732:+|nuORF ENST00000455773.7_1_10:12238257-12240732:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2726135253906 2 503.271824 1004.5291 1.2305 0.00061928 1.1274 0.00056741 2.358 0.0011867 503.2717239342043 54.343 0.89066 48.478 47.838 48.729 -5.8653 138 54 4 0 0 0 0.036857 1 34203 34203 51.63 9.5352 1 326760000 7471 13590 5018 5136 8752 8752 0.027011699261947797 EALQKENESF 10 Unmodified _EALQKENESF_ 0 0 0 REV__nc|ENSG00000174197|Q8IWI9-3|MGA REV__nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.5408935546875 3 398.85942 1193.55643 1.3715 0.00054705 -2.081 -0.00083003 -0.70947 -0.00028298 398.8584455651114 34.074 0.092224 30.089 30.022 30.115 -3.9853 6 4 2 0 0 0 0.23634 1 19581 19581 3.5871 0 1 2204800 + 7472 22773 5019 5137 8753 8753 -0.032603913241018745 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2589111328125 2 490.258382 978.502212 0.32861 0.00016111 0.89395 0.00043827 1.2226 0.00059937 490.25881868384874 68.381 0.65365 68.381 68.184 68.838 0 60 29 3 0 0 0 0.0082661 2 38146 38046;38146 92.491 40.223 1 12682000 7473 1569 5020 5138 8754;8755 8755 0.012100613149982564 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.509521484375 1 979.509488 978.502212 0.23435 0.00022955 0.80041 0.00078401 1.0348 0.0010136 979.5101042919779 68.379 0.35988 68.379 68.204 68.564 0 40 16 3 0 0 0 0.0086722 2 38170 38068;38170 88.954 20.873 1 2229300 7474 1569 5020 5138 8756;8757 8757 0.012100613149982564 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2599182128906 2 490.258382 978.502212 0.38082 0.0001867 -0.15296 -7.4992E-05 0.22786 0.00011171 490.25838281006924 68.891 0.54407 68.411 68.264 68.808 -0.48071 49 23 3 0 0 0 0.010818 2 37624 37624;37734 78.149 34.291 1 6731600 7475 1569 5020 5138 8758;8759 8758 0.012100613149982564 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5120239257812 1 979.509488 978.502212 0.12384 0.0001213 -0.60145 -0.00058913 -0.47762 -0.00046783 979.5089236064488 68.934 0.31818 68.454 68.309 68.627 -0.48071 21 13 2 0 0 0 0.07916 1 37632 37632 37.974 7.3375 1 1423000 7476 1569 5020 5138 8760 8760 0.012100613149982564 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2590942382812 2 490.258382 978.502212 0.74854 0.00036698 0.56787 0.00027841 1.3164 0.00064538 490.2586917476869 76.015 0.61118 69.839 69.465 70.076 -6.1757 82 32 3 0 0 0 0.0082661 3 49698 49575;49698;49822 92.491 44.146 1 40524000 7477 1569 5020 5138 8761;8762;8763 8762 0.012100613149982564 EALQLATSF 9 Unmodified _EALQLATSF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.5100708007812 1 979.509488 978.502212 0.64937 0.00063607 -0.044501 -4.3589E-05 0.60487 0.00059248 979.5094774911929 76.064 0.36723 69.888 69.601 69.968 -6.1757 29 19 2 0 0 0 0.0082548 2 49729 49608;49729 96.367 14.476 1 7462900 7478 1569 5020 5138 8764;8765 8765 0.012100613149982564 EALQPEVKY 9 Unmodified _EALQPEVKY_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7930908203125 2 538.784764 1075.55498 0.74119 0.00039934 2.2713 0.0012237 3.0125 0.0016231 538.7857712426627 47.823 0.33016 47.823 47.665 47.995 0 36 15 3 0 0 0 0.2001 1 26289 26289 23.148 1.4018 1 22399000 + 7479 19587 5021 5139 8766 8766 0.020220193778186513 EALRDVLSY 9 Unmodified _EALRDVLSY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2826538085938 2 533.282389 1064.55022 0.54415 0.00029019 0.084986 4.5322E-05 0.62914 0.00033551 533.2823462721644 53.13 0.40398 53.13 52.9 53.304 0 62 18 4 0 0 0 0.011291 2 29478 29364;29478 76.825 34.985 1 115810000 7480 840 5022 5140 8767;8768 8768 0.020531352350417365 EALRDVLSY 9 Unmodified _EALRDVLSY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2832641601562 2 533.282389 1064.55022 0.4285 0.00022851 0.51984 0.00027722 0.94834 0.00050574 533.2825973463385 53.653 0.27532 53.201 53.046 53.321 -0.45173 26 13 2 0 0 0 0.0094097 1 28991 28991 82.529 40.69 1 23149000 7481 840 5022 5140 8769 8769 0.020531352350417365 EALRDVLSY 9 Unmodified _EALRDVLSY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1;ENST00000492058.1_1_2:183799470-183800113:-|nuORF nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2835083007812 2 533.282389 1064.55022 0.015127 8.0672E-06 1.5518 0.00082754 1.5669 0.00083561 533.2833468708692 53.3 0.18943 53.236 53.136 53.326 -0.063423 15 8 2 0 0 0 0.078314 1 28930 28930 38.176 3.7738 1 1718700 7482 840 5022 5140 8770 8770 0.020531352350417365 EALRENLYF 9 Unmodified _EALRENLYF_ 0 0 0 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7957763671875 2 577.795663 1153.57677 -0.11881 -6.8646E-05 -0.53443 -0.00030879 -0.65323 -0.00037743 577.795436056595 56.214 0.29414 56.214 56.028 56.322 0 31 13 3 0 0 0 0.028475 1 31208 31208 56.177 30.778 1 8765400 7483 3424 5023 5141 8771 8771 0.006128241263922973 EALRENLYF 9 Unmodified _EALRENLYF_ 0 0 0 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 MSMS AL20221201_MKP_PDAC_01 4 577.796875 2 577.795663 1153.57677 NaN NaN NaN NaN NaN NaN NaN 62.444 1 56.268 55.768 56.768 -6.1757 0 0 0 0.16551 1 40291 40291 34.932 7.3033 1 7484 3424 5023 5141 8772 8772 0.006128241263922973 EALRENLYF 9 Unmodified _EALRENLYF_ 0 0 0 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.795663 1153.57677 -0.32201 -0.00018606 0.49497 0.00028599 0.17295 9.9931E-05 577.7969466791816 56.648 0.12923 56.163 56.136 56.265 -0.48554 -0.02539 0.0011535 NaN 56.177 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1830100 7485 3424 5023 5141 0.006128241263922973 EALRLVQAF 9 Unmodified _EALRLVQAF_ 0 0 0 ENSG00000167815|ENST00000301522|PRDX2;ENST00000498785.1_1_19:12910655-12911052:-|nuORF;ENST00000466174.5_1_19:12907897-12910877:-|nuORF ENSG00000167815|ENST00000301522|PRDX2 ENSG00000167815|ENST00000301522|PRDX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8037719726562 2 523.803291 1045.59203 0.35151 0.00018412 -0.78159 -0.0004094 -0.43008 -0.00022528 523.8028364511457 63.778 0.26498 63.292 63.193 63.458 -0.4858 21 14 2 0 0 0 0.010611 1 34779 34779 78.728 38.771 1 4225200 7486 7673 5024 5142 8773 8773 0.07105735714230832 EALSERELF 9 Unmodified _EALSERELF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2806396484375 2 547.279846 1092.54514 0.68986 0.00037755 -3.1858 -0.0017435 -2.496 -0.001366 547.2780328425689 51.514 0.32848 51.514 51.254 51.583 0 26 14 2 0 0 0 0.047714 1 28442 28442 45.74 15.515 1 5593000 7487 1990 5025 5143 8774 8774 0.002568313724395921 EALSHPLA 8 Unmodified _EALSHPLA_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000531016.1_1_11:47836976-47837554:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.9122619628906 2 419.226885 836.439217 1.4717 0.00061696 -0.051181 -2.1456E-05 1.4205 0.00059551 419.2268238911777 86.185 0.47337 80.01 79.81 80.283 -6.1757 40 25 2 0 0 0 8.7369 1 56864 56864 26.341 1.6674 1 10638000 7488 583 5026 5144 8775 8775 0.014455403176043546 EALSILTPYW 10 Unmodified _EALSILTPYW_ 0 0 0 REV__ENSG00000180801|ENST00000315366|ARSJ REV__ENSG00000180801|ENST00000315366|ARSJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3171997070312 2 596.816064 1191.61758 0.042144 2.5152E-05 -0.63865 -0.00038116 -0.59651 -0.00035601 596.8160785101237 95.959 0.17999 95.959 95.819 95.999 0 15 11 2 0 0 0 0.69377 1 53014 53014 3.5965 0 1 275670 + 7489 23170 5027 5145 8776 8776 0.029431654459813217 EALSLAHTY 9 Unmodified _EALSLAHTY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7559814453125 2 502.756007 1003.49746 -0.085985 -4.3229E-05 -0.21711 -0.00010915 -0.30309 -0.00015238 502.75586668599374 41.509 0.31982 41.509 41.325 41.645 0 40 16 3 0 0 0 0.012148 1 22420 22420 74.423 43.786 1 63104000 7490 6146 5028 5146 8777 8777 -0.004148228277699673 EALSLAHTY 9 Unmodified _EALSLAHTY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7550048828125 2 502.756007 1003.49746 0.59888 0.00030109 2.5604 0.0012873 3.1593 0.0015884 503.26052968997254 46.897 0.79354 41.817 41.464 42.257 -5.0805 165 113 2 0 0 0 0.012148 2 29116 28986;29116 74.423 38.296 1 74581000 7491 6146 5028 5146 8778;8779 8779 -0.004148228277699673 EALSLGEVAY 10 Unmodified _EALSLGEVAY_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2691650390625 2 526.268947 1050.52334 0.40462 0.00021294 -0.1721 -9.0569E-05 0.23252 0.00012237 526.2687581691274 64.375 0.32522 64.375 64.214 64.539 0 45 14 4 0 0 0 0.024981 1 35926 35926 71.134 45.734 1 11855000 7492 1464 5029 5147 8780 8780 0.00010026623863268469 EALSTETLQ 9 Unmodified _EALSTETLQ_ 0 0 0 REV__ENSG00000170925|ENST00000302917|TEX13B REV__ENSG00000170925|ENST00000302917|TEX13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2527160644531 2 496.250754 990.486955 0.40663 0.00020179 1.8564 0.00092123 2.263 0.001123 496.25161276517326 53.131 0.18825 52.679 52.574 52.762 -0.45173 14 9 2 0 0 0 0.15471 1 28752 28752 27.629 3.6082 1 1703400 + 7493 22522 5030 5148 8781 8781 -0.008668502728369276 EALVNWDP 8 Unmodified _EALVNWDP_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2304992675781 2 472.229625 942.444697 -0.45865 -0.00021659 0.67058 0.00031667 0.21193 0.00010008 472.23025507592246 55.38 0.311 55.38 55.262 55.573 0 23 13 3 0 0 0 0.63706 1 30781 30781 22.736 0.98964 1 2464500 7494 444 5031 5149 8782 8782 -0.028827808905703023 EALVNWDP 8 Unmodified _EALVNWDP_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.229625 942.444697 -0.45865 -0.00021659 0.67058 0.00031667 0.21193 0.00010008 472.23025507592246 55.38 0.311 55.38 55.262 55.573 0 0 0 NaN 22.736 23 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2464500 7495 444 5031 5149 -0.028827808905703023 EALWELKLD 9 Unmodified _EALWELKLD_ 0 0 0 ENSG00000160233|ENST00000291592|LRRC3 ENSG00000160233|ENST00000291592|LRRC3 ENSG00000160233|ENST00000291592|LRRC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8012084960938 2 558.800414 1115.58628 NaN NaN NaN NaN NaN NaN NaN 40.922 1 40.922 40.422 41.422 0 0 0 0 0.39118 1 22030 22030 20.415 1.1575 1 7496 6707 5032 5150 8783 8783 0.033105924118899566 EALYFGSDY 9 Unmodified _EALYFGSDY_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7294921875 2 532.732197 1063.44984 0.429 0.00022854 -2.7349 -0.0014569 -2.3059 -0.0012284 532.7305408002991 68.98 0.26479 68.98 68.838 69.103 0 20 11 2 0 0 0 0.41742 1 38418 38418 11.64 1.5664 1 1161400 7497 2684 5033 5151 8784 8784 -0.079345218186063 EALYNLSLF 9 Unmodified _EALYNLSLF_ 0 0 0 REV__nc|ENSG00000069702|Q03167-2|TGFBR3 REV__nc|ENSG00000069702|Q03167-2|TGFBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2813110351562 2 535.281857 1068.54916 0.39604 0.00021199 0.69465 0.00037183 1.0907 0.00058382 535.2822937398921 68.761 0.22977 68.761 68.634 68.864 0 19 9 3 0 0 0 0.32871 1 38312 38312 15.847 1.0089 1 830610 + 7498 17454 5034 5152 8785 8785 0.01762920866121931 EALYTVLNF 9 Unmodified _EALYTVLNF_ 0 0 0 REV__ENSG00000075539|ENST00000358350|FRYL REV__ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2822265625 2 535.281857 1068.54916 0.39867 0.0002134 0.61775 0.00033067 1.0164 0.00054407 535.2821619729424 88.842 0.36122 88.338 88.134 88.496 -0.50423 20 15 2 0 0 0 0.55144 1 48574 48574 4.3292 0 1 469520 + 7499 17572 5035 5153 8786 8786 0.01762920866121931 EAMADLHTL 9 Oxidation (M) _EAM(Oxidation (M))ADLHTL_ EAM(1)ADLHTL EAM(93)ADLHTL 0 0 1 nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN nc|ENSG00000175793|P31947-2|SFN nc|ENSG00000175793|P31947-2|SFN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2396850585938 2 508.739499 1015.46445 -0.34966 -0.00017789 -0.4591 -0.00023356 -0.80876 -0.00041145 508.73908163664504 34.087 0.2427 34.087 33.947 34.19 0 20 12 2 0 0 0 0.0082281 1 17903 17903 92.822 64.335 1 6548300 7500 8542 5036 5154 8787 8787 1449 -0.042667729421282274 EAMEHPYFY 9 Oxidation (M) _EAM(Oxidation (M))EHPYFY_ EAM(1)EHPYFY EAM(89)EHPYFY 0 0 1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7447509765625 2 601.744782 1201.47501 -0.33332 -0.00020057 -0.013638 -8.2068E-06 -0.34696 -0.00020878 601.7444733710495 41.957 0.24512 41.957 41.785 42.03 0 21 12 2 0 0 0 0.0086179 1 22672 22672 89.427 53.3 1 4416200 7501 1039;1938 5037 5155 8788 8788 172 -0.11766790287697404 EAMEILELY 9 Oxidation (M) _EAM(Oxidation (M))EILELY_ EAM(1)EILELY EAM(57)EILELY 0 0 1 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7714233398438 2 563.770465 1125.52638 0.42587 0.00024009 -0.27175 -0.00015321 0.15411 8.6885E-05 563.7705464055869 72.601 0.59048 72.601 72.334 72.925 0 90 26 5 0 0 0 0.026094 2 40346 40346;40450 57.471 30.211 1 30497000 7502 9022;15094 5038 5156 8789;8790 8789 1511 -0.03136466313640085 EAMEILELY 9 Oxidation (M) _EAM(Oxidation (M))EILELY_ EAM(1)EILELY EAM(44)EILELY 0 0 1 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7694702148438 2 563.770465 1125.52638 0.84709 0.00047756 -0.34137 -0.00019245 0.50572 0.00028511 563.77038111112 73.067 0.26536 72.591 72.429 72.695 -0.47588 39 11 4 0 0 0 0.052168 1 39959 39959 44.407 26.272 1 1384800 7503 9022;15094 5038 5156 8791 8791 1511 -0.03136466313640085 EAMEILELY 9 Oxidation (M) _EAM(Oxidation (M))EILELY_ 0 0 1 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 563.770465 1125.52638 1.1814 0.00066603 -0.087668 -4.9424E-05 1.0937 0.0006166 563.7699067679076 79.038 0.14044 72.863 72.809 72.95 -6.1757 0.17766 0.00021434 NaN 57.471 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 5162500 7504 9022;15094 5038 5156 1511 -0.03136466313640085 EAMEILELY 9 Unmodified _EAMEILELY_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7732543945312 2 555.773008 1109.53146 0.46254 0.00025707 0.17636 9.8019E-05 0.63891 0.00035509 555.7732454287182 87.853 0.35733 87.853 87.696 88.053 0 44 19 3 0 0 0 0.11784 1 48614 48614 42.095 33.501 1 1446800 7505 9022;15094 5038 5157 8792 8792 -0.01892162451031254 EAMEILELY 9 Unmodified _EAMEILELY_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.773008 1109.53146 0.67345 0.00037429 0.33004 0.00018343 1.0035 0.00055771 555.7733541464173 88.42 0.21053 87.916 87.79 88 -0.50423 0.031217 0.00014291 NaN 42.095 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 433340 7506 9022;15094 5038 5157 -0.01892162451031254 EAMELIVKL 9 Unmodified _EAMELIVKL_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2;nc|ENSG00000058729|Q9BVS4-2|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3014526367188 2 523.301736 1044.58892 1.0992 0.00057519 2.8371 0.0014847 3.9362 0.0020598 523.8036587062119 88.664 0.46806 82.488 82.168 82.636 -6.1757 51 25 3 0 0 0 0.2324 2 58548 58548;58591 20.415 4.5813 1 11481000 7507 807 5039 5158 8793;8794 8793 0.06840724545213561 EAMHEYGEAF 10 Unmodified _EAMHEYGEAF_ 0 0 0 REV__ENSG00000169184|ENST00000302326|MN1 REV__ENSG00000169184|ENST00000302326|MN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.283447265625 2 592.239864 1182.46517 0.17882 0.0001059 1.8701 0.0011075 2.0489 0.0012134 592.2413194712402 52.781 0.26243 52.781 52.617 52.88 0 24 11 3 0 0 0 0.23566 1 29180 29180 7.2892 0.56607 1 1893000 + 7508 22383 5040 5159 8795 8795 -0.11875978293073786 EAMKSLPAL 9 Oxidation (M) _EAM(Oxidation (M))KSLPAL_ EAM(1)KSLPAL EAM(60)KSLPAL 0 0 1 ENSG00000117697|ENST00000366977|NSL1 ENSG00000117697|ENST00000366977|NSL1 ENSG00000117697|ENST00000366977|NSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2630004882812 2 488.26261 974.510668 -0.061152 -2.9858E-05 1.8492 0.00090288 1.788 0.00087303 488.2637587066304 40.468 0.4818 40.468 40.276 40.758 0 52 25 3 0 0 0 0.023481 2 21797 21685;21797 60.074 25.887 1 13392000 7509 3333 5041 5160 8796;8797 8797 595 0.02239291959961065 EAMNARGMVF 10 2 Oxidation (M) _EAM(Oxidation (M))NARGM(Oxidation (M))VF_ EAM(1)NARGM(1)VF EAM(44)NARGM(44)VF 0 0 2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2572631835938 2 579.257533 1156.50051 -0.47402 -0.00027458 0.81884 0.00047432 0.34482 0.00019974 579.2580100041848 27.48 0.18564 27.48 27.41 27.596 0 14 8 2 0 0 0 0.11755 1 14168 14168 43.858 24.601 1 1233000 7510 5448 5042 5161 8798 8798 1002;1003 -0.07147639036907094 EAMNTQLEL 9 Oxidation (M) _EAM(Oxidation (M))NTQLEL_ EAM(1)NTQLEL EAM(52)NTQLEL 0 0 1 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.74951171875 2 532.750064 1063.48558 0.25359 0.0001351 -0.11422 -6.0853E-05 0.13936 7.4246E-05 532.7493606939936 46.873 0.44714 46.873 46.656 47.103 0 64 21 4 0 0 0 0.03568 1 25704 25704 52.268 14.117 1 22567000 7511 4768 5043 5162 8799 8799 867 -0.0436280763326522 EAMRIGAEVY 10 Oxidation (M) _EAM(Oxidation (M))RIGAEVY_ EAM(1)RIGAEVY EAM(58)RIGAEVY 0 0 1 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000108515|ENST00000519602|ENO3;nc|ENSG00000108515|P13929-2|ENO3 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7793579101562 2 577.779156 1153.54376 -0.21213 -0.00012257 -0.94722 -0.00054728 -1.1594 -0.00066985 577.7786915477136 33.452 0.45987 33.452 33.109 33.569 0 99 34 5 0 0 0 0.051223 2 17498 17498;17606 57.722 24.936 1 206170000 7512 1135 5044 5163 8800;8801 8800 189 -0.026871259879726495 EAMRIGAEVY 10 Oxidation (M) _EAM(Oxidation (M))RIGAEVY_ EAM(1)RIGAEVY EAM(78)RIGAEVY 0 0 1 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000108515|ENST00000519602|ENO3;nc|ENSG00000108515|P13929-2|ENO3 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7806396484375 2 577.779156 1153.54376 0.97764 0.00056486 -0.88419 -0.00051086 0.093455 5.3996E-05 577.7786800272481 38.142 0.67018 33.773 33.456 34.126 -4.3689 118 40 4 0 0 0 0.017375 3 22296 22296;22421;22549 78.06 45.275 1 137160000 7513 1135 5044 5163 8802;8803;8804 8802 189 -0.026871259879726495 EAMRIGAEVY 10 Unmodified _EAMRIGAEVY_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000108515|ENST00000519602|ENO3;nc|ENSG00000108515|P13929-2|ENO3 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7819213867188 2 569.781699 1137.54884 -0.18024 -0.0001027 0.029894 1.7033E-05 -0.15035 -8.5665E-05 569.7816735269438 44.834 0.26764 44.834 44.691 44.959 0 23 13 3 0 0 0 0.0081376 1 24412 24412 91.085 64.201 1 25695000 7514 1135 5044 5164 8805 8805 -0.014428221253638185 EAMRIGAEVY 10 Unmodified _EAMRIGAEVY_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000108515|ENST00000519602|ENO3;nc|ENSG00000108515|P13929-2|ENO3 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7822265625 2 569.781699 1137.54884 1.1672 0.00066506 0.1266 7.2136E-05 1.2938 0.0007372 569.7815798020848 50.836 0.66458 45.187 44.907 45.572 -5.649 99 40 4 0 0 0 0.0042881 3 31908 31772;31908;32041 100.71 67.923 1 288110000 7515 1135 5044 5164 8806;8807;8808 8807 -0.014428221253638185 EAMRKMEYEK 10 Unmodified _EAMRKMEYEK_ 0 0 0 REV__ENSG00000135392|ENST00000678005|DNAJC14 REV__ENSG00000135392|ENST00000678005|DNAJC14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.8772277832031 3 438.877541 1313.61079 NaN NaN NaN NaN NaN NaN NaN 104.7 1 104.7 104.2 105.2 0 0 0 0 0.99248 1 57610 57610 0.62683 0 1 + 7516 20061 5045 5165 8809 8809 -0.033468387685388734 EAMVGHEM 8 Unmodified _EAMVGHEM_ 0 0 0 nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MSMS AL20221201_MKP_PDAC_01 4 452.1890258789062 2 452.188588 902.362623 NaN NaN NaN NaN NaN NaN NaN 28.047 1 24.899 24.399 25.399 -3.1482 0 0 0 0.65904 1 15604 15604 30.225 16.717 1 7517 5645 5046 5166 8810 8810 -0.09246342565518262 EANAIALKY 9 Unmodified _EANAIALKY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7744445800781 2 496.7742 991.533846 0.97066 0.0004822 0.073222 3.6375E-05 1.0439 0.00051857 496.77421982154544 42.661 0.36605 42.661 42.468 42.834 0 59 18 4 0 0 0 0.0082353 2 23038 23038;23142 96.111 62.008 1 84922000 7518 3712 5047 5167 8811;8812 8811 0.037740540689469526 EANAIALKY 9 Unmodified _EANAIALKY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7749633789062 2 496.7742 991.533846 1.5511 0.00077055 -0.018684 -9.2816E-06 1.5324 0.00076127 496.77417704258727 47.761 0.54951 42.527 42.243 42.793 -5.2339 99 32 4 0 0 0 0.0086722 3 29652 29521;29652;29786 88.954 54.851 1 145240000 7519 3712 5047 5167 8813;8814;8815 8814 0.037740540689469526 EANAIALKY 9 Unmodified _EANAIALKY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.544921875 1 992.541123 991.533846 1.4788 0.0014678 0.47666 0.0004731 1.9555 0.0019409 992.5406230661484 47.753 0.21295 42.519 42.403 42.616 -5.2339 16 12 2 0 0 0 0.0032147 1 29649 29649 125.53 47.38 1 4861800 7520 3712 5047 5167 8816 8816 0.037740540689469526 EANAISVEL 9 Unmodified _EANAISVEL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000130294|Q12756|KIF1A nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.4852294921875 1 945.488753 944.481476 -0.11018 -0.00010418 -1.0985 -0.0010386 -1.2087 -0.0011428 945.4885999842936 59.414 0.27002 59.414 59.262 59.532 0 18 11 2 0 0 0 0.07916 1 33049 33049 37.974 12.575 1 3081900 7521 760;4197 5048 5168 8817 8817 0.00701470935348425 EANAISVEL 9 Unmodified _EANAISVEL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000130294|Q12756|KIF1A nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.247802734375 2 473.248015 944.481476 0.71822 0.0003399 0.67508 0.00031948 1.3933 0.00065938 473.24785653090777 67.418 0.32658 61.242 61.091 61.418 -6.1757 29 18 2 0 0 0 0.028475 1 43872 43872 56.177 6.244 1 13868000 7522 760;4197 5048 5168 8818 8818 0.00701470935348425 EANAVFDIL 9 Unmodified _EANAVFDIL_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2580871582031 2 496.258382 990.502212 0.22197 0.00011016 -0.12528 -6.2174E-05 0.096686 4.7981E-05 496.2582353230481 87.522 0.3642 87.522 87.398 87.762 0 29 16 2 0 0 0 0.36964 2 48441 48441;48534 13.906 5.9959 1 1241600 7523 9308 5049 5169 8819;8820 8819 0.006580613150163117 EANAVFDIL 9 Unmodified _EANAVFDIL_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.5127563476562 1 991.509488 990.502212 -0.002435 -2.4143E-06 1.0887 0.0010794 1.0863 0.001077 991.5101489826703 87.564 0.19685 87.564 87.443 87.64 0 11 8 2 0 0 0 0.36964 1 48462 48462 13.906 5.9959 1 429220 7524 9308 5049 5169 8821 8821 0.006580613150163117 EANAVFDIL 9 Unmodified _EANAVFDIL_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 496.258382 990.502212 0.51856 0.00025734 -1.0501 -0.0005211 -0.53151 -0.00026376 496.2576320971302 87.999 0.23785 87.494 87.411 87.649 -0.50423 -0.013721 -0.00073712 NaN 13.906 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 250090 7525 9308 5049 5169 0.006580613150163117 EANDLALRL 9 Unmodified _EANDLALRL_ 0 0 0 ENST00000493197.5_1_5:177638946-177656967:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL;ENST00000481436.5_1_5:177642388-177652501:-|nuORF;ENST00000494126.6_1_5:177641847-177659033:-|nuORF;nc|ENSG00000164089|Q8TBG4-3|ETNPPL;nc|ENSG00000164089|Q8TBG4-2|ETNPPL;ENSG00000164089|ENST00000296486|ETNPPL ENST00000493197.5_1_5:177638946-177656967:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.281005859375 2 507.782556 1013.55056 -0.34192 -0.00017362 0.44832 0.00022765 0.10641 5.4032E-05 508.28323647542464 55.713 0.016167 55.713 55.703 55.719 0 5 3 2 0 0 0 0.18482 1 30961 30961 18.146 4.6385 1 2928500 7526 8507 5050 5170 8822 8822 0.04432554954883017 EANGPGGGYDL 11 Unmodified _EANGPGGGYDL_ 0 0 0 ENST00000473452.1_1_3:36527678-36547327:+|nuORF;ENSG00000144681|ENST00000273183|STAC ENST00000473452.1_1_3:36527678-36547327:+|nuORF ENST00000473452.1_1_3:36527678-36547327:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.229736328125 2 525.230353 1048.44615 0.963 0.00050579 -2.8677 -0.0015062 -1.9047 -0.0010004 525.2291502393515 45.994 0.32562 45.994 45.86 46.186 0 23 15 2 0 0 0 0.63851 1 25152 25152 9.3831 0.78985 1 6647300 7527 5633 5051 5171 8823 8823 -0.07613191592463409 EANKEKNLEQY 11 Unmodified _EANKEKNLEQY_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3344116210938 2 683.335881 1364.65721 0.73111 0.00049959 -4.1876 -0.0028615 -3.4565 -0.0023619 683.3354081088039 42.761 0.34223 42.761 42.586 42.928 0 33 17 3 0 0 0 0.11933 1 23184 23184 40.239 17.503 1 3416400 7528 2543 5052 5172 8824 8824 -0.010533593412446862 EANMPLPGY 9 Oxidation (M) _EANM(Oxidation (M))PLPGY_ EANM(1)PLPGY EANM(42)PLPGY 0 0 1 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3 nc|ENSG00000102024|P13797-2|PLS3 nc|ENSG00000102024|P13797-2|PLS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2274475097656 2 504.228768 1006.44298 0.32992 0.00016636 0.64951 0.0003275 0.97943 0.00049386 504.22910266696965 40.238 0.30202 40.238 40.068 40.37 0 30 14 3 0 0 0 0.06294 1 21601 21601 41.84 27.001 1 5364000 7529 2010 5053 5173 8825 8825 344 -0.05998157970839202 EANPLLEAF 9 Unmodified _EANPLLEAF_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2588500976562 2 502.258382 1002.50221 0.43601 0.00021899 0.31969 0.00016057 0.7557 0.00037956 502.25853476917825 81.716 0.59957 81.716 81.37 81.969 0 92 32 4 0 0 0 0.0082661 3 45318 45226;45318;45412 92.491 0 1 10844000 7530 9845 5054 5174 8826;8827;8828 8827 0.0010606131500026095 EANPLLEAF 9 Unmodified _EANPLLEAF_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.259521484375 2 502.258382 1002.50221 0.29098 0.00014615 1.0548 0.00052979 1.3458 0.00067594 502.2587913256187 82.188 0.47556 81.693 81.443 81.919 -0.4952 38 18 3 0 0 0 0.031062 1 45048 45048 54.774 0 1 1454700 7531 9845 5054 5174 8829 8829 0.0010606131500026095 EANPLLEAF 9 Unmodified _EANPLLEAF_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2587280273438 2 502.258382 1002.50221 1.268 0.00063685 1.1947 0.00060005 2.4627 0.0012369 502.2582074638244 89.329 0.58807 83.153 82.846 83.434 -6.1757 74 32 3 0 0 0 0.0085164 3 58974 58839;58974;59124 103.35 0 1 20735000 7532 9845 5054 5174 8830;8831;8832 8831 0.0010606131500026095 EANPSADLYY 10 Unmodified _EANPSADLYY_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7539672851562 2 571.753661 1141.49277 0.75438 0.00043132 0.65429 0.00037409 1.4087 0.00080541 571.753808694331 47.521 0.30265 47.521 47.405 47.707 0 20 13 2 0 0 0 0.18021 1 26021 26021 36.127 16.765 1 3134100 7533 10689 5055 5175 8833 8833 -0.07231751761196392 EANQHELLY 9 Unmodified _EANQHELLY_ 0 0 0 nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1 nc|ENSG00000153029|Q95460-2|MR1 nc|ENSG00000153029|Q95460-2|MR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.76953125 2 558.769645 1115.52474 0.3601 0.00020122 -0.4945 -0.00027631 -0.13439 -7.5096E-05 558.769339464771 37.395 0.41098 37.395 37.138 37.549 0 63 21 4 0 0 0 0.015445 2 19848 19848;19964 68.081 45.344 1 56908000 7534 6230 5056 5176 8834;8835 8834 -0.028403392873769917 EANQHELLY 9 Unmodified _EANQHELLY_ 0 0 0 nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1;ENST00000367578.1_1_1:181003164-181019478:+|nuORF;nc|ENSG00000153029|Q95460-5|MR1;nc|ENSG00000153029|Q95460-4|MR1 nc|ENSG00000153029|Q95460-2|MR1 nc|ENSG00000153029|Q95460-2|MR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7705078125 2 558.769645 1115.52474 1.7436 0.00097427 -1.0086 -0.00056357 0.735 0.0004107 558.7693241998403 41.787 0.46825 37.179 36.985 37.453 -4.6079 94 29 4 0 0 0 0.015445 3 25197 25060;25197;25335 68.081 41.057 1 66621000 7535 6230 5056 5176 8836;8837;8838 8837 -0.028403392873769917 EANQWEVAY 9 Unmodified _EANQWEVAY_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2477416992188 2 555.248546 1108.48254 0.70587 0.00039193 -0.38468 -0.00021359 0.32119 0.00017834 555.2484520004157 53.072 0.34404 53.072 52.9 53.244 0 29 15 2 0 0 0 0.024189 2 29355 29355;29464 65.235 47.089 1 25034000 7536 1157 5057 5177 8839;8840 8839 -0.06736314695763213 EANQWEVAY 9 Unmodified _EANQWEVAY_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.249267578125 2 555.248546 1108.48254 1.1772 0.00065365 -0.65776 -0.00036522 0.51946 0.00028843 555.2481371871559 60.989 0.40756 54.842 54.647 55.055 -6.1478 42 21 3 0 0 0 0.033587 2 39218 39218;39359 58.679 34.706 1 55124000 7537 1157 5057 5177 8841;8842 8841 -0.06736314695763213 EANSPAHEEF 10 Unmodified _EANSPAHEEF_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7424926757812 2 565.741085 1129.46762 0.39428 0.00022306 2.6587 0.0015042 3.053 0.0017272 565.7425186255737 51.637 0.21648 51.637 51.561 51.777 0 18 9 2 0 0 0 0.67033 1 28566 28566 6.2058 0.97511 1 2513300 7538 5001 5058 5178 8843 8843 -0.09193806563757789 EANSSYFHL 9 Unmodified _EANSSYFHL_ 0 0 0 ENSG00000111432|ENST00000229030|FZD10 ENSG00000111432|ENST00000229030|FZD10 ENSG00000111432|ENST00000229030|FZD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2431030273438 2 534.243264 1066.47197 -0.27313 -0.00014592 0.68241 0.00036457 0.40928 0.00021866 534.2434339818268 28.929 0.24178 28.929 28.801 29.043 0 26 11 3 0 0 0 0.30562 1 14942 14942 16.942 2.104 1 3399100 7539 2789 5059 5179 8844 8844 -0.05860297350182009 EANVPTGLATY 11 Unmodified _EANVPTGLATY_ 0 0 0 REV__ENSG00000185823|ENST00000329468|NPAP1 REV__ENSG00000185823|ENST00000329468|NPAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2874755859375 2 568.285128 1134.5557 NaN NaN NaN NaN NaN NaN NaN 52.44 1 52.44 51.94 52.94 0 0 0 0 0.61053 1 29020 29020 20.415 1.1575 1 + 7540 23526 5060 5180 8845 8845 -0.006191859731416116 EANWDLFYYRF 11 Unmodified _EANWDLFYYRF_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.9043884277344 3 508.569981 1522.68811 0.3477 0.00017683 0.89396 0.00045464 1.2417 0.00063147 508.9045548535054 21.363 0.18627 21.377 21.295 21.481 0.013796 84 30 3 0 0 0 0.73992 1 10905 10905 0.50596 0.051438 1 8644100 7541 5034 5061 5181 8846 8846 -0.05232161236358479 EAPEAYPVF 9 Unmodified _EAPEAYPVF_ 0 0 0 ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C ENSG00000099385|ENST00000215115|BCL7C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7461853027344 2 511.745108 1021.47566 0.25596 0.00013098 1.2222 0.00062543 1.4781 0.00075641 511.7449260077399 62.785 0.46341 62.785 62.633 63.096 0 39 19 3 0 0 0 0.41742 1 35017 35017 11.64 1.4569 1 1247000 7542 1700 5062 5182 8847 8847 -0.034216275763242265 EAPGLRELSY 10 Unmodified _EAPGLRELSY_ 0 0 0 ENST00000229769.2_1_6:35434224-35434398:+|nuORF ENST00000229769.2_1_6:35434224-35434398:+|nuORF ENST00000229769.2_1_6:35434224-35434398:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8648071289062 3 378.864506 1133.57169 1.491 0.0005649 -0.17861 -6.767E-05 1.3124 0.00049723 378.8643299900765 19.493 0.53681 16.837 16.612 17.149 -2.6564 187 45 5 0 0 0 0.50362 1 10328 10328 14.218 3.3192 1 922020000 7543 11065 5063 5183 8848 8848 0.010245202637634065 EAPKDPFSI 9 Unmodified _EAPKDPFSI_ 0 0 0 nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1;ENSG00000214575|ENST00000684509|CPEB1 nc|ENSG00000214575|Q9BZB8-4|CPEB1 nc|ENSG00000214575|Q9BZB8-4|CPEB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2591857910156 2 502.258382 1002.50221 0.72156 0.00036241 0.35428 0.00017794 1.0758 0.00054035 502.2585094546393 74.164 0.41975 74.164 73.945 74.365 0 45 19 3 0 0 0 0.39863 1 41320 41320 12.532 0.89125 1 1686700 7544 10498 5064 5184 8849 8849 0.0010606131498889226 EAPKDPFSI 9 Unmodified _EAPKDPFSI_ 0 0 0 nc|ENSG00000214575|Q9BZB8-4|CPEB1;nc|ENSG00000214575|Q9BZB8-2|CPEB1;nc|ENSG00000214575|Q9BZB8-3|CPEB1;nc|ENSG00000214575|Q9BZB8|CPEB1;ENSG00000214575|ENST00000684509|CPEB1 nc|ENSG00000214575|Q9BZB8-4|CPEB1 nc|ENSG00000214575|Q9BZB8-4|CPEB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2582092285156 2 502.258382 1002.50221 0.89185 0.00044794 1.6049 0.00080609 2.4968 0.001254 502.25928234671545 77.881 0.68115 71.705 71.392 72.073 -6.1757 72 38 2 0 0 0 0.32871 1 50822 50822 15.847 0 1 50215000 7545 10498 5064 5184 8850 8850 0.0010606131498889226 EAPKNPRK 8 Unmodified _EAPKNPRK_ 0 0 0 REV__nc|ENSG00000158290|Q13620-3|CUL4B REV__nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7114868164062 2 470.272158 938.529764 0.047023 2.2114E-05 0.50704 0.00023845 0.55406 0.00026056 470.2725235951686 38.108 0.20774 37.836 37.761 37.969 -0.27133 20 9 3 0 0 0 8.7369 1 20035 20035 5.2307 0.47466 1 2119600 + 7546 21424 5065 5185 8851 8851 0.058040093658974 EAPPQEFVV 9 Unmodified _EAPPQEFVV_ 0 0 0 nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1 nc|ENSG00000153303|Q8N878-2|FRMD1 nc|ENSG00000153303|Q8N878-2|FRMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2599792480469 2 508.258382 1014.50221 0.48072 0.00024433 -0.20056 -0.00010193 0.28017 0.0001424 508.25825233276714 59.195 0.47708 59.195 58.902 59.379 0 48 20 3 0 0 0 0.32871 2 32889 32889;32995 15.847 4.2069 1 14650000 7547 6257 5066 5186 8852;8853 8852 -0.0044593868499305245 EAPSNPHF 8 Unmodified _EAPSNPHF_ 0 0 0 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7070007324219 2 449.706317 897.398081 1.2534 0.00056368 0.90944 0.00040898 2.1629 0.00097267 449.7064428459186 19.874 0.28199 17.218 17.105 17.387 -2.6564 26 16 2 0 0 0 0.57045 1 10526 10526 28.487 9.0478 1 2809000 7548 6030 5067 5187 8854 8854 -0.05472220721856047 EAPTAKSSE 9 Unmodified _EAPTAKSSE_ 0 0 0 REV__ENSG00000170734|ENST00000372236|POLH REV__ENSG00000170734|ENST00000372236|POLH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 919.4375610351562 1 919.436717 918.429441 -0.71131 -0.00065401 2.0728 0.0019058 1.3615 0.0012518 919.4384494468146 28.266 0.16328 28.266 28.128 28.292 0 12 7 2 0 0 0 0.55144 1 14568 14568 4.3292 0 1 624440 + 7549 22506 5068 5188 8855 8855 -0.03303692478425546 EAQDLQGKDTY 11 Unmodified _EAQDLQGKDTY_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.2927856445312 2 634.293682 1266.57281 NaN NaN NaN NaN NaN NaN NaN 21.658 1 21.658 21.158 22.158 0 0 0 0 0.94011 1 10975 10975 5.2969 3.6443 1 7550 3341 5069 5189 8856 8856 -0.04981310157995722 EAQEFVEKY 9 Unmodified _EAQEFVEKY_ 0 0 0 ENSG00000149488|ENST00000358864|TMC2;nc|ENSG00000149488|Q8TDI7-3|TMC2 ENSG00000149488|ENST00000358864|TMC2 ENSG00000149488|ENST00000358864|TMC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.1546630859375 3 381.516995 1141.52915 0.93715 0.00035754 -1.1044 -0.00042136 -0.16728 -6.3819E-05 381.85057427263973 27.208 0.4075 24.171 23.949 24.356 -3.0365 55 20 4 0 0 0 0.20358 1 15111 15111 6.6304 1.9145 1 53443000 7551 6012 5070 5190 8857 8857 -0.03594874864461417 EAQETHRESL 10 Unmodified _EAQETHRESL_ 0 0 0 REV__ENSG00000283039|ENST00000634670|KLF18 REV__ENSG00000283039|ENST00000634670|KLF18 MSMS AL20221201_MKP_PDAC_01 4 600.2847900390625 2 600.286191 1198.55783 NaN NaN NaN NaN NaN NaN NaN 95.506 1 89.33 88.83 89.83 -6.1757 0 0 0 0.81856 1 63260 63260 11.495 0.67078 1 + 7552 24688 5071 5191 8858 8858 -0.03350757235330093 EAQGNSSHLD 10 Unmodified _EAQGNSSHLD_ 0 0 0 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2305908203125 2 529.230884 1056.44722 -0.01051 -5.5622E-06 -1.3968 -0.00073924 -1.4073 -0.0007448 529.2311772041104 29.38 0.27037 29.38 29.161 29.432 0 18 12 2 0 0 0 0.6966 1 15232 15232 3.2813 0.28607 1 901090 7553 422 5072 5192 8859 8859 -0.07874977223559654 EAQHVQRI 8 Unmodified _EAQHVQRI_ 0 0 0 nc|ENSG00000111879|Q8NB25-4|FAM184A;nc|ENSG00000111879|Q8NB25-2|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A nc|ENSG00000111879|Q8NB25-4|FAM184A nc|ENSG00000111879|Q8NB25-4|FAM184A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7675170898438 2 490.76724 979.519927 NaN NaN NaN NaN NaN NaN NaN 89.93 1 89.93 89.43 90.43 0 0 0 0 0.97348 1 49755 49755 5.7604 0 1 7554 2842 5073 5193 8860 8860 0.029348213605089768 EAQKLLEQY 9 Unmodified _EAQKLLEQY_ 0 0 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2950439453125 2 561.295496 1120.57644 NaN NaN NaN NaN NaN NaN NaN 38.294 1 38.294 37.794 38.794 0 0 0 0 0.016974 1 20443 20443 82.529 48.128 1 7555 6245 5074 5194 8861 8861 0.02097404406526948 EAQKLLEQY 9 Unmodified _EAQKLLEQY_ 0 0 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2971801757812 2 561.295496 1120.57644 0.88067 0.00049432 -1.0269 -0.00057638 -0.1462 -8.2063E-05 561.2949560353599 43.575 0.53531 38.81 38.618 39.153 -4.7648 70 33 3 0 0 0 0.0089732 2 26407 26407;26543 86.332 51.93 1 30955000 7556 6245 5074 5194 8862;8863 8862 0.02097404406526948 EAQLLLERY 9 Unmodified _EAQLLLERY_ 0 0 0 ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2 ENSG00000178078|ENST00000594605|STAP2 ENSG00000178078|ENST00000594605|STAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8114624023438 2 567.811313 1133.60807 0.83258 0.00047275 -0.8685 -0.00049314 -0.035922 -2.0397E-05 567.8110289471488 54.062 0.27662 54.062 53.945 54.222 0 21 12 2 0 0 0 0.013118 1 30001 30001 71.708 26.008 1 3728000 7557 8729 5075 5195 8864 8864 0.04661397160475644 EAQLSHVY 8 Unmodified _EAQLSHVY_ 0 0 0 REV__ENSG00000134323|ENST00000281043|MYCN REV__ENSG00000134323|ENST00000281043|MYCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7345581054688 2 473.735074 945.455596 -0.28841 -0.00013663 -0.74823 -0.00035446 -1.0366 -0.00049109 473.7351116101998 25.756 0.29199 25.756 25.591 25.883 0 25 13 2 0 0 0 0.67481 1 13203 13203 19.439 1.304 1 1506100 + 7558 19975 5076 5196 8865 8865 -0.019313785162921704 EAQPIVTKY 9 Unmodified _EAQPIVTKY_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1937866210938 3 350.193963 1047.56006 -0.42209 -0.00014781 0.073451 2.5722E-05 -0.34864 -0.00012209 350.1939516395353 25.35 0.3267 25.35 25.202 25.528 0 36 15 3 0 0 0 0.4887 1 12972 12972 8.1555 3.108 1 6665200 7559 10507 5077 5197 8866 8866 0.038183232404207956 EAQPIVTKY 9 Unmodified _EAQPIVTKY_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.787353515625 2 524.787307 1047.56006 -0.86973 -0.00045642 -0.15806 -8.2949E-05 -1.0278 -0.00053937 524.7871762712026 32.366 0.30992 32.366 32.204 32.513 0 41 18 3 0 0 0 0.094905 1 16880 16880 43.772 23.319 1 57316000 7560 10507 5077 5197 8867 8867 0.038183232404207956 EAQPIVTKY 9 Unmodified _EAQPIVTKY_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7872314453125 2 524.787307 1047.56006 0.77943 0.00040904 -0.31716 -0.00016644 0.46227 0.00024259 524.7871723117712 36.704 0.49232 32.421 32.173 32.665 -4.2835 83 30 3 0 0 0 0.067618 2 21400 21400;21523 43.772 30.265 1 103320000 7561 10507 5077 5197 8868;8869 8868 0.038183232404207956 EAQPVHQAY 9 Unmodified _EAQPVHQAY_ 0 0 0 ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;nc|ENSG00000163848|Q9UQR1-2|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7515258789062 2 521.751256 1041.48796 -0.14385 -7.5052E-05 1.3538 0.00070632 1.2099 0.00063127 521.7519829336276 19.289 0.29261 19.289 19.173 19.466 0 39 18 3 0 0 0 0.39863 1 9608 9608 12.532 2.4576 1 1676000 7562 7083 5078 5198 8870 8870 -0.03112591113290364 EAQPVHQAY 9 Unmodified _EAQPVHQAY_ 0 0 0 ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF;nc|ENSG00000163848|Q9UQR1-2|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 MSMS AL20221201_MKP_PDAC_01 4 521.7501831054688 2 521.751256 1041.48796 NaN NaN NaN NaN NaN NaN NaN 21.449 1 18.714 18.214 19.214 -2.7348 0 0 0 0.39043 1 11489 11489 20.454 5.6154 1 7563 7083 5078 5198 8871 8871 -0.03112591113290364 EAQQHFHVK 9 Unmodified _EAQQHFHVK_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2864990234375 2 562.285797 1122.55704 0.67805 0.00038126 0.98029 0.0005512 1.6583 0.00093246 562.2858487756504 27.468 0.14319 27.421 27.351 27.495 -0.046408 10 6 2 0 0 0 0.27545 1 14176 14176 25.399 7.253 1 4797800 7564 1438 5079 5199 8872 8872 0.0006649290628502058 EAQRRPYY 8 Unmodified _EAQRRPYY_ 0 0 0 ENSG00000196557|ENST00000348261|CACNA1H ENSG00000196557|ENST00000348261|CACNA1H ENSG00000196557|ENST00000348261|CACNA1H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3120727539062 2 541.772522 1081.53049 0.68408 0.00037062 -3.5571 -0.0019271 -2.873 -0.0015565 541.7687554405618 56.96 0.33675 56.891 56.638 56.975 -0.068737 22 16 2 0 0 0 8.7369 1 30932 30932 19.439 3.5918 1 2626000 7565 9840 5080 5200 8873 8873 -0.007011959850387939 EAQRSYIL 8 Unmodified _EAQRSYIL_ 0 0 0 nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000175354|ENST00000309660|PTPN2;ENSG00000196396|ENST00000371621|PTPN1 nc|ENSG00000175354|P17706-3|PTPN2;ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.262451171875 2 490.263999 978.513445 0.27348 0.00013408 -1.6899 -0.00082852 -1.4165 -0.00069444 490.2624402608031 39.38 0.16743 39.38 39.302 39.469 0 21 7 4 0 0 0 0.24723 1 21116 21116 62.573 10.304 1 2407500 7566 9810;8514 5081 5201 8874 8874 0.023328834091330464 EAQRVQPRTVF 11 Unmodified _EAQRVQPRTVF_ 0 0 0 ENST00000445029.5_3_22:24999197-25003944:+|nuORF ENST00000445029.5_3_22:24999197-25003944:+|nuORF ENST00000445029.5_3_22:24999197-25003944:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.244873046875 3 444.245721 1329.71533 0.52742 0.00023431 0.089463 3.9743E-05 0.61689 0.00027405 444.2455906614726 28.043 0.23209 28.073 27.956 28.188 0.029564 20 8 3 0 0 0 0.67477 1 14583 14583 6.6235 0.3891 1 8668600 7567 13446 5082 5202 8875 8875 0.0636636709468803 EAQVAFEAF 9 Unmodified _EAQVAFEAF_ 0 0 0 REV__ENSG00000075539|ENST00000358350|FRYL REV__ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2431945800781 2 506.242732 1010.47091 0.80194 0.00040597 -0.17334 -8.7752E-05 0.6286 0.00031822 506.2425237903728 53.739 0.84341 53.739 53.486 54.33 0 95 39 3 0 0 0 0.022193 1 29922 29922 61.357 34.474 1 14427000 + 7568 17572 5083 5203 8876 8876 -0.033905117191011414 EAQVQELQ 8 Unmodified _EAQVQELQ_ 0 0 0 nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000133392|P35749-4|MYH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7392578125 2 472.737814 943.461075 NaN NaN NaN NaN NaN NaN NaN 14.684 1 14.653 14.153 15.153 -0.030868 0 0 0 0.97444 1 7161 7161 2.3027 0 1 7569 4510 5084 5204 8877 8877 -0.01291699724481532 EARALPGKEAF 11 Unmodified _EARALPGKEAF_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3 ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8842163085938 3 396.8839 1187.62987 -0.78924 -0.00031324 0.71841 0.00028512 -0.070838 -2.8114E-05 397.21824008986175 30.152 0.20658 30.152 30.078 30.285 0 13 9 2 0 0 0 0.60536 1 15707 15707 11.065 2.3135 1 1024900 7570 4671 5085 5205 8878 8878 0.0435620190901318 EARCDASSF 9 Unmodified _EARCDASSF_ 0 0 0 ENSG00000159579|ENST00000394420|RSPRY1;ENST00000564530.5_1_16:57254621-57272884:+|nuORF ENSG00000159579|ENST00000394420|RSPRY1 ENSG00000159579|ENST00000394420|RSPRY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2037048339844 2 493.205824 984.397095 0.72049 0.00035535 -0.60092 -0.00029638 0.11957 5.8971E-05 493.2053211908131 46.366 0.25034 46.366 46.21 46.461 0 21 11 2 0 0 0 0.39863 1 25308 25308 12.532 0 1 5831600 7571 6661 5086 5206 8879 8879 -0.09572803153071163 EARCLVETF 9 Carbamidomethyl (C) _EARC(Carbamidomethyl (C))LVETF_ EARC(1)LVETF EARC(70)LVETF 0 1 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7742309570312 2 562.773874 1123.53319 0.55601 0.00031291 0.91203 0.00051327 1.468 0.00082617 562.774251762349 47.36 0.25925 47.36 47.212 47.471 0 22 11 2 0 0 0 0.013609 1 25925 25925 70.332 39.695 1 5690600 7572 7633 5087 5207 8880 8880 740 -0.02363108642430234 EARCLVETF 9 Carbamidomethyl (C) _EARC(Carbamidomethyl (C))LVETF_ EARC(1)LVETF EARC(80)LVETF 0 1 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MSMS AL20221201_MKP_PDAC_01 4 562.7752075195312 2 562.773874 1123.53319 NaN NaN NaN NaN NaN NaN NaN 53.209 1 47.405 46.905 47.905 -5.8042 0 0 0 0.019104 1 33605 33605 79.596 23.055 1 7573 7633 5087 5207 8881 8881 740 -0.02363108642430234 EARCQLRTI 9 Unmodified _EARCQLRTI_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC;REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8951721191406 3 363.865964 1088.57606 -0.54056 -0.00019669 1.0522 0.00038286 0.51164 0.00018617 364.2004765489307 19.215 0.24181 19.238 19.088 19.33 0.023106 21 13 2 0 0 0 0.21847 1 9645 9645 0.86438 0.40604 1 383500 + 7574 29474;24335 5088 5208 8882 8882 0.035317062056719806 EARCQLRTI 9 Unmodified _EARCQLRTI_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC;REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.865964 1088.57606 0.02859 1.0403E-05 1.2522 0.00045564 1.2808 0.00046604 363.8663841625799 19.313 0.3054 19.321 19.176 19.481 0.0078487 0.041198 9.5883E-05 NaN 0.86438 35 19 3 NaN NaN NaN NaN 0 NaN NaN 0 615270 + 7575 29474;24335 5088 5208 0.035317062056719806 EARDELTEIF 10 Unmodified _EARDELTEIF_ 0 0 0 ENST00000465873.5_1_9:138834060-138837107:-|nuORF;ENST00000471163.1_1_9:138834060-138839712:-|nuORF;ENSG00000130560|ENST00000371756|UBAC1 ENST00000465873.5_1_9:138834060-138837107:-|nuORF ENST00000465873.5_1_9:138834060-138837107:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2017517089844 3 408.203187 1221.58773 NaN NaN NaN NaN NaN NaN NaN 17.029 1 14.443 13.943 14.943 -2.5866 0 0 0 0.96981 1 8869 8869 1.9064 0 1 7576 4225 5089 5209 8883 8883 -0.014198182900372558 EAREEKVVY 9 Unmodified _EAREEKVVY_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7902221679688 2 561.793121 1121.57169 -0.17924 -0.0001007 -0.045225 -2.5407E-05 -0.22447 -0.0001261 561.7930946832148 19.992 0.19365 19.992 19.912 20.106 0 37 24 2 0 0 0 0.43463 1 10010 10010 10.824 1.4408 1 997460 7577 10760 5090 5210 8884 8884 0.0157652026375672 EAREEKVVY 9 Unmodified _EAREEKVVY_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8646545410156 3 374.864506 1121.57169 -0.46425 -0.00017403 0.12069 4.5241E-05 -0.34356 -0.00012879 374.8644865969383 19.995 0.28393 19.995 19.874 20.158 0 100 33 4 0 0 0 0.49272 1 10090 10090 12.241 8.648 1 10230000 7578 10760 5090 5210 8885 8885 0.0157652026375672 EAREEKVVY 9 Unmodified _EAREEKVVY_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7937622070312 2 561.793121 1121.57169 1.195 0.00067135 -4.0451 -0.0022725 -2.8501 -0.0016012 561.7908328301504 21.876 0.4383 19.142 18.955 19.394 -2.7348 56 24 3 0 0 0 0.036857 1 11702 11702 51.63 22.548 1 6903600 7579 10760 5090 5210 8886 8886 0.0157652026375672 EAREEKVVY 9 Unmodified _EAREEKVVY_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 374.864506 1121.57169 0.080789 3.0285E-05 0.82756 0.00031022 0.90835 0.00034051 374.864947381163 19.922 0.14486 19.93 19.84 19.985 0.0078487 -0.032943 0.00072922 NaN 12.241 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 396750 7580 10760 5090 5210 0.0157652026375672 EARKQVEVF 9 Unmodified _EARKQVEVF_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000558931.5_1_14:24615401-24615790:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.205078125 3 369.204862 1104.59276 -0.75891 -0.00028019 0.41058 0.00015159 -0.34833 -0.00012861 369.2050087811514 28.332 0.49259 28.332 28.128 28.621 0 70 26 4 0 0 0 0.14 2 14580 14580;14687 40.239 20.877 1 38169000 7581 1890 5091 5211 8887;8888 8887 0.04464530363270569 EARKQVEVF 9 Unmodified _EARKQVEVF_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000558931.5_1_14:24615401-24615790:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3043212890625 2 553.303655 1104.59276 -0.37538 -0.0002077 -0.40096 -0.00022185 -0.77635 -0.00042956 553.3033685182376 28.334 0.38953 28.334 28.189 28.579 0 51 21 3 0 0 0 0.014417 1 14592 14592 69.105 31.131 1 9548900 7582 1890 5091 5211 8889 8889 0.04464530363270569 EARKQVEVF 9 Unmodified _EARKQVEVF_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000558931.5_1_14:24615401-24615790:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.205322265625 3 369.204862 1104.59276 1.5316 0.00056548 0.17849 6.5901E-05 1.7101 0.00063138 369.2047884185087 31.031 0.36567 27.534 27.277 27.643 -3.497 35 16 3 0 0 0 0.028475 2 17548 17438;17548 51.415 21.575 1 112640000 7583 1890 5091 5211 8890;8891 8891 0.04464530363270569 EARKQVEVF 9 Unmodified _EARKQVEVF_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF;ENST00000558931.5_1_14:24615401-24615790:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3057250976562 2 553.303655 1104.59276 0.94225 0.00052135 0.13503 7.4713E-05 1.0773 0.00059606 553.3034756891554 30.992 0.38846 27.495 27.277 27.666 -3.497 33 17 3 0 0 0 0.017075 2 17483 17483;17607 66.457 30.33 1 69036000 7584 1890 5091 5211 8892;8893 8892 0.04464530363270569 EARLSELEF 9 Unmodified _EARLSELEF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2802124023438 2 547.279846 1092.54514 0.54378 0.0002976 0.24143 0.00013213 0.78521 0.00042973 547.2795533193921 57.724 0.23032 57.724 57.614 57.845 0 32 10 4 0 0 0 0.017075 1 32103 32103 66.457 10.28 1 10238000 7585 3399 5092 5212 8894 8894 0.002568313724395921 EARMRGTR 8 Unmodified _EARMRGTR_ 0 0 0 REV__ENST00000240100.6_1_8:29194463-29194535:-|nuORF REV__ENST00000240100.6_1_8:29194463-29194535:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.759765625 2 488.758892 975.503231 -0.29883 -0.00014606 -0.5528 -0.00027018 -0.85163 -0.00041624 488.75865782292726 20.254 0.18409 20.254 20.158 20.342 0 16 11 2 0 0 0 0.80722 1 10185 10185 2.3027 0 1 276720 + 7586 24839 5093 5213 8895 8895 0.014499972029284436 EARPEEPIAF 10 Unmodified _EARPEEPIAF_ 0 0 0 ENST00000588278.1_1_19:507506-508034:+|nuORF;nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1 ENST00000588278.1_1_19:507506-508034:+|nuORF ENST00000588278.1_1_19:507506-508034:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2517700195312 2 579.793121 1157.57169 0.64713 0.0003752 0.65267 0.00037841 1.2998 0.00075362 580.2946060517751 49.572 0.18397 49.572 49.487 49.671 0 9 7 2 0 0 0 0.22316 1 27329 27329 20.415 6.5085 1 1167800 7587 5380 5094 5214 8896 8896 -0.0007947973624595761 EARPLEEL 8 Unmodified _EARPLEEL_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.755859375 2 478.756007 955.497461 0.67331 0.00032235 -0.016567 -7.9314E-06 0.65674 0.00031442 478.7562564426684 60.478 0.39931 60.478 60.225 60.625 0 33 17 3 0 0 0 0.80143 1 33788 33788 5.7604 0 1 1894000 + 7588 23085 5095 5215 8897 8897 0.01793177172248761 EARQDLEAM 9 Oxidation (M) _EARQDLEAM(Oxidation (M))_ EARQDLEAM(1) EARQDLEAM(44) 0 0 1 nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 MSMS AL20221201_MKP_PDAC_01 4 539.7452392578125 2 539.745313 1077.47607 NaN NaN NaN NaN NaN NaN NaN 18.719 1 16.098 15.598 16.598 -2.6215 0 0 0 0.098163 1 9877 9877 43.858 7.7313 1 7589 5757 5096 5216 8898 8898 1041 -0.0595657591879899 EARQGFNF 8 Unmodified _EARQGFNF_ 0 0 0 REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7320556640625 2 484.732866 967.451179 0.54849 0.00026587 -2.7121 -0.0013146 -2.1636 -0.0010488 484.7318940543254 60.821 0.21133 60.821 60.695 60.907 0 10 8 2 0 0 0 0.80676 1 33933 33933 2.5775 0.51773 1 413470 + 7590 18416 5097 5217 8899 8899 -0.03384842939192367 EARSREPTGEW 11 Unmodified _EARSREPTGEW_ 0 0 0 ENST00000593586.1_1_19:40723001-40723700:-|nuORF ENST00000593586.1_1_19:40723001-40723700:-|nuORF ENST00000593586.1_1_19:40723001-40723700:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2139282226562 3 439.877586 1316.61093 NaN NaN NaN NaN NaN NaN NaN 19.202 1 19.202 18.702 19.702 0 0 0 0 0.94144 1 9590 9590 0.50596 0 1 7591 15737 5098 5218 8900 8900 -0.03471379452662404 EARSTQVNF 9 Unmodified _EARSTQVNF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7636108398438 2 526.261988 1050.50942 0.87729 0.00046169 0.073971 3.8928E-05 0.95126 0.00050061 526.2634753506289 73.349 1.2287 67.173 66.542 67.77 -6.1757 145 60 3 0 0 0 0.07087 4 48077 47843;47964;48077;48191 39.95 15.929 1 48808000 7592 6500 5099 5219 8901;8902;8903;8904 8903 -0.013812060845793894 EARVQYEGF 9 Unmodified _EARVQYEGF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;BMS1|p.R881Q|1|0.19|ENSG00000165733|chr10:42820297-42820297|G/A|missense_variant;ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENSG00000165733|ENST00000374518|BMS1;BMS1|p.R881Q|1|0.19|ENSG00000165733|chr10:42820297-42820297|G/A|missense_variant;ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENSG00000165733|ENST00000374518|BMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.765380859375 2 549.764363 1097.51417 NaN NaN NaN NaN NaN NaN NaN 38.659 1 38.659 38.159 39.159 0 0 0 0 0.068588 1 20664 20664 63.961 33.324 1 7593 7384;13430;44 5100 5220 8905 8905 -0.030683219418278895 EASAGEILQY 10 Unmodified _EASAGEILQY_ 0 0 0 REV__ENSG00000157483|ENST00000288235|MYO1E REV__ENSG00000157483|ENST00000288235|MYO1E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.8004150390625 2 540.764029 1079.5135 -0.44591 -0.00024113 0.63072 0.00034107 0.18481 9.994E-05 540.7627212611827 34.539 0.11893 34.539 34.46 34.579 0 8 5 2 0 0 0 0.22941 1 18166 18166 13.906 2.2658 1 2188700 + 7594 21384 5101 5221 8906 8906 -0.02307161381509104 EASAIVEYAY 10 Unmodified _EASAIVEYAY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2670288085938 2 558.266404 1114.51826 0.961 0.00053649 -0.21834 -0.00012189 0.74266 0.0004146 558.2659401984747 54.723 0.3245 54.723 54.528 54.852 0 30 13 3 0 0 0 0.063761 1 30366 30366 54.774 25.692 1 5666600 7595 1302 5102 5222 8907 8907 -0.03442277238787028 EASAVTVRF 9 Unmodified _EASAVTVRF_ 0 0 0 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2;ENST00000477849.1_1_1:16056358-16058475:+|nuORF nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.264404296875 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 44.825 1 44.825 44.325 45.325 0 0 0 0 0.035688 1 24407 24407 63.961 24.003 1 7596 3256 5103 5223 8908 8908 0.02332883409144415 EASAVTVRF 9 Unmodified _EASAVTVRF_ 0 0 0 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2;ENST00000477849.1_1_1:16056358-16058475:+|nuORF nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2640075683594 2 490.263999 978.513445 0.86522 0.00042419 -0.19731 -9.6733E-05 0.66791 0.00032745 490.2639073937469 50.027 0.44428 44.488 44.236 44.68 -5.5391 50 28 2 0 0 0 0.010301 2 31205 31205;31346 79.596 41.421 1 19937000 7597 3256 5103 5223 8909;8910 8909 0.02332883409144415 EASFDLFWTDH 11 Unmodified _EASFDLFWTDH_ 0 0 0 REV__ENST00000393145.5_1_16:89219466-89219556:+|nuORF REV__ENST00000393145.5_1_16:89219466-89219556:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8273315429688 2 684.298767 1366.58298 0.14842 0.00010156 1.5337 0.0010495 1.6821 0.0011511 684.2992575913623 36.095 0.15649 36.095 36.01 36.167 0 11 7 2 0 0 0 0.29564 1 19125 19125 5.7319 0 1 2162800 + 7598 26415 5104 5224 8911 8911 -0.08564702432749982 EASFVWNV 8 Unmodified _EASFVWNV_ 0 0 0 ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2307739257812 2 476.232168 950.449782 NaN NaN NaN NaN NaN NaN NaN 21.068 1 21.097 20.597 21.597 0.028357 0 0 0 0.94061 1 10680 10680 12.532 0 1 7599 8410 5105 5225 8912 8912 -0.02742477027948098 EASGHIEFNL 10 Unmodified _EASGHIEFNL_ 0 0 0 REV__ENSG00000143278|ENST00000367412|F13B REV__ENSG00000143278|ENST00000367412|F13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7689819335938 2 558.769645 1115.52474 -0.051328 -2.8681E-05 -0.25757 -0.00014392 -0.3089 -0.0001726 558.7691136894489 30.821 0.22317 30.821 30.73 30.953 0 15 10 2 0 0 0 0.66569 1 16041 16041 6.7232 0.99131 1 1903900 + 7600 20618 5106 5226 8913 8913 -0.028403392873769917 EASGLSLHY 9 Unmodified _EASGLSLHY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7405090332031 2 488.740357 975.46616 0.65234 0.00031882 -0.54724 -0.00026746 0.1051 5.1367E-05 488.7402057908871 42.982 0.24927 42.982 42.853 43.102 0 30 12 3 0 0 0 0.06187 1 23323 23323 42.095 20.348 1 24646000 7601 1980 5107 5227 8914 8914 -0.02255395861868692 EASGLSLHY 9 Unmodified _EASGLSLHY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7398681640625 2 488.740357 975.46616 0.8209 0.0004012 -1.1342 -0.00055435 -0.31335 -0.00015315 488.73947963680916 48.288 0.36106 43.054 42.87 43.231 -5.2339 47 21 3 0 0 0 0.0086179 2 30135 30002;30135 89.427 38.572 1 35069000 7602 1980 5107 5227 8915;8916 8916 -0.02255395861868692 EASGRIYVY 9 Unmodified _EASGRIYVY_ 0 0 0 ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2750244140625 2 529.269281 1056.52401 0.3496 0.00018503 0.62033 0.00032832 0.96992 0.00051335 529.2715453079039 37.32 0.66598 37.32 37.18 37.846 0 53 34 3 0 0 0 0.037118 1 19813 19813 63.961 14.292 1 21290000 7603 4801 5108 5228 8917 8917 -0.0019913393641672883 EASIFRNNWKC 11 Unmodified _EASIFRNNWKC_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8272705078125 2 684.329879 1366.6452 0.33284 0.00022777 -1.4191 -0.00097116 -1.0863 -0.00074339 684.3290251203283 36.244 0.4336 36.244 36.113 36.547 0 32 21 2 0 0 0 0.27972 1 19236 19236 18.146 5.1039 1 3711700 7604 7647 5109 5229 8918 8918 -0.023452545654208734 EASIFVRYDEH 11 Unmodified _EASIFVRYDEH_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8276977539062 2 683.325316 1364.63608 -0.049247 -3.3652E-05 -0.7379 -0.00050423 -0.78715 -0.00053788 683.8274966705629 37.525 1.031 37.525 37.117 38.148 0 110 52 3 0 0 0 0.63851 2 20212 19806;20212 9.3831 3.1773 1 4311000 + 7605 23661 5110 5230 8919;8920 8920 -0.03165324650103685 EASKLLLTY 9 Unmodified _EASKLLLTY_ 0 0 0 ENST00000463611.1_1_3:25824608-25824881:-|nuORF;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.297119140625 2 519.297507 1036.58046 0.63186 0.00032812 -0.93588 -0.000486 -0.30402 -0.00015788 519.29698443059 53.537 0.37807 53.537 53.327 53.705 0 53 17 4 0 0 0 0.044011 1 29670 29670 47.749 17.112 1 39921000 7606 6089;13699 5111 5231 8921 8921 0.06363493900244066 EASKLLLTY 9 Unmodified _EASKLLLTY_ 0 0 0 ENST00000463611.1_1_3:25824608-25824881:-|nuORF;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2974853515625 2 519.297507 1036.58046 0.24082 0.00012506 -0.24241 -0.00012588 -0.0015896 -8.2549E-07 519.2973515783001 54.018 0.39884 53.551 53.347 53.746 -0.46664 64 19 4 0 0 0 0.05447 2 29293 29187;29293 43.858 13.222 1 76720000 7607 6089;13699 5111 5231 8922;8923 8923 0.06363493900244066 EASKLLLTY 9 Unmodified _EASKLLLTY_ 0 0 0 ENST00000463611.1_1_3:25824608-25824881:-|nuORF;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2978515625 2 519.297507 1036.58046 -0.33203 -0.00017242 0.60152 0.00031237 0.26949 0.00013995 519.2978637021026 53.666 0.22892 53.603 53.463 53.692 -0.063423 23 17 2 0 0 0 0.010611 1 29104 29104 78.728 48.092 1 6862500 7608 6089;13699 5111 5231 8924 8924 0.06363493900244066 EASKLLLTY 9 Unmodified _EASKLLLTY_ 0 0 0 ENST00000463611.1_1_3:25824608-25824881:-|nuORF;ENST00000478991.1_1_3:25819998-25824881:-|nuORF;ENST00000474611.1_1_3:25819310-25824959:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2977294921875 2 519.297507 1036.58046 1.0065 0.00052269 0.040084 2.0815E-05 1.0466 0.0005435 519.2973292893661 59.887 0.54453 53.772 53.496 54.041 -6.1147 86 30 4 0 0 0 0.028475 3 38500 38352;38500;38631 56.177 25.541 1 299830000 7609 6089;13699 5111 5231 8925;8926;8927 8926 0.06363493900244066 EASKLVMSY 9 Unmodified _EASKLVMSY_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MSMS AL20221201_MKP_PDAC_01 4 514.2595825195312 2 514.260068 1026.50558 NaN NaN NaN NaN NaN NaN NaN 45.717 1 40.762 40.262 41.262 -4.9549 0 0 0 0.6557 1 28117 28117 10.824 0 1 7610 4081;7542 5112 5232 8928 8928 -0.006610119026163375 EASKYIMQY 9 Oxidation (M) _EASKYIM(Oxidation (M))QY_ EASKYIM(1)QY EASKYIM(59)QY 0 0 1 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7689208984375 2 574.768257 1147.52196 -0.25664 -0.00014751 -0.56601 -0.00032533 -0.82266 -0.00047284 574.768226089457 29.821 0.48083 29.821 29.597 30.078 0 51 25 4 0 0 0 0.024882 1 15549 15549 58.679 41.737 1 42264000 7611 8612 5113 5233 8929 8929 1456 -0.04589930736574388 EASKYIMQY 9 Oxidation (M) _EASKYIM(Oxidation (M))QY_ EASKYIM(1)QY EASKYIM(150)QY 0 0 1 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7683715820312 2 574.768257 1147.52196 1.3871 0.00079726 0.67567 0.00038836 2.0628 0.0011856 574.7683001299309 34.091 0.73438 30.106 29.589 30.323 -3.9853 104 40 4 0 0 0 0.00044362 3 19395 19395;19520;19646 145.13 105.17 1 49230000 7612 8612 5113 5233 8930;8931;8932 8930 1456 -0.04589930736574388 EASKYIMQY 9 Unmodified _EASKYIMQY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.76806640625 2 566.7708 1131.52705 0.060725 3.4417E-05 -2.3333 -0.0013225 -2.2726 -0.001288 566.7691571629181 40.421 0.23146 40.421 40.314 40.545 0 17 11 2 0 0 0 0.01958 1 21716 21716 63.961 34.879 1 6267100 7613 8612 5113 5234 8933 8933 -0.0334562687394282 EASKYIMQY 9 Unmodified _EASKYIMQY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7715454101562 2 566.7708 1131.52705 0.91444 0.00051828 1.4008 0.00079392 2.3152 0.0013122 566.771175077583 45.841 0.53676 40.887 40.598 41.135 -4.9549 102 35 4 0 0 0 0.0090524 2 28192 28192;28341 85.642 62.493 1 142640000 7614 8612 5113 5234 8934;8935 8934 -0.0334562687394282 EASPARPQY 9 Unmodified _EASPARPQY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.5927734375 2 509.751256 1017.48796 -0.055124 -2.81E-05 0.39225 0.00019995 0.33712 0.00017185 509.75126926160084 23.477 0.49391 23.477 23.182 23.676 0 61 24 4 0 0 0 0.59532 1 11888 11888 1.6526 0.32309 1 25547000 + + 7615 16827 5114 5235 8936 8936 -0.020085911132923684 EASQALIEAY 10 Unmodified _EASQALIEAY_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7706298828125 2 547.771854 1093.52915 -0.03889 -2.1303E-05 -3.2247 -0.0017664 -3.2636 -0.0017877 547.7708490336087 52.01 0.73672 52.01 51.73 52.467 0 52 32 2 0 0 0 0.1942 1 28805 28805 34.402 10.381 1 4832600 7616 2229 5115 5236 8937 8937 -0.01386874864465426 EASQLQLRI 9 Unmodified _EASQLQLRI_ 0 0 0 REV__ENST00000465155.5_1_1:212791475-212791580:+|nuORF REV__ENST00000465155.5_1_1:212791475-212791580:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.3036499023438 2 529.303655 1056.59276 NaN NaN NaN NaN NaN NaN NaN 18.88 1 18.88 18.38 19.38 0 0 0 0 0.83329 1 9414 9414 3.5965 0 1 + 7617 27388 5116 5237 8938 8938 0.0667253036326656 EASRLTVEL 9 Unmodified _EASRLTVEL_ 0 0 0 nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000431225.5_1_10:75551812-75554405:+|nuORF nc|ENSG00000214655|A7E2V4-5|ZSWIM8 nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.281982421875 2 509.282389 1016.55022 0.3557 0.00018115 -0.036343 -1.8509E-05 0.31936 0.00016264 509.28229559528813 49.073 0.30339 49.073 48.932 49.236 0 26 14 2 0 0 0 0.0094097 1 26948 26948 82.529 22.455 1 12961000 7618 10501 5117 5238 8939 8939 0.04261135235049096 EASSIELSQCP 11 Unmodified _EASSIELSQCP_ 0 0 0 ENST00000478631.6_2_1:53460811-53461279:+|nuORF ENST00000478631.6_2_1:53460811-53461279:+|nuORF ENST00000478631.6_2_1:53460811-53461279:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7628173828125 2 582.266078 1162.5176 0.58196 0.00033886 -0.43611 -0.00025393 0.14585 8.4924E-05 582.767815001675 41.18 0.96858 41.179 40.626 41.594 -0.0017929 125 46 4 0 0 0 0.29564 1 21737 21737 2.9952 0 1 18539000 7619 14022 5118 5239 8940 8940 -0.057154399500859654 EASYPDCLFS 10 Unmodified _EASYPDCLFS_ 0 0 0 REV__nc|ENSG00000135636|O75923-15|DYSF REV__nc|ENSG00000135636|O75923-15|DYSF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2400512695312 2 566.23679 1130.45903 0.53598 0.00030349 3.2428 0.0018362 3.7788 0.0021397 566.2392075680024 53.072 0.33684 53.072 52.858 53.195 0 20 15 2 0 0 0 0.35903 1 29391 29391 24.021 4.7636 1 1918800 + 7620 20084 5119 5240 8941 8941 -0.10098496524619804 EASYYWVY 8 Unmodified _EASYYWVY_ 0 0 0 ENSG00000103353|ENST00000395878|UBFD1;ENST00000563366.5_1_16:23573052-23581908:+|nuORF ENSG00000103353|ENST00000395878|UBFD1 ENSG00000103353|ENST00000395878|UBFD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2630004882812 2 540.737283 1079.46001 0.5251 0.00028394 -0.64331 -0.00034786 -0.11821 -6.392E-05 541.2381887048754 42.342 0.269 42.342 42.238 42.507 0 22 12 2 0 0 0 8.7369 1 22938 22938 2.5775 0 1 2263100 7621 2131 5120 5241 8942 8942 -0.07653914093384628 EATAAIHSF 9 Unmodified _EATAAIHSF_ 0 0 0 ENSG00000137513|ENST00000281038|NARS2 ENSG00000137513|ENST00000281038|NARS2 ENSG00000137513|ENST00000281038|NARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7348022460938 2 473.735074 945.455596 -0.24968 -0.00011828 -0.21163 -0.00010026 -0.46132 -0.00021854 473.73500615589296 35.207 0.25304 35.207 35.053 35.306 0 28 12 3 0 0 0 0.0090851 1 18567 18567 85.357 53.24 1 9314500 7622 4945 5121 5242 8943 8943 -0.019313785162808017 EATAAIHSF 9 Unmodified _EATAAIHSF_ 0 0 0 ENSG00000137513|ENST00000281038|NARS2 ENSG00000137513|ENST00000281038|NARS2 ENSG00000137513|ENST00000281038|NARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7360229492188 2 473.735074 945.455596 0.32119 0.00015216 -0.51195 -0.00024253 -0.19076 -9.0372E-05 473.7347588470572 39.83 0.3197 35.3 35.096 35.416 -4.5294 35 20 2 0 0 0 0.0095811 2 23627 23627;23762 81.613 54.729 1 24652000 7623 4945 5121 5242 8944;8945 8944 -0.019313785162808017 EATDIALLL 9 Unmodified _EATDIALLL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7764892578125 2 479.776408 957.538263 0.26531 0.00012729 0.03843 1.8438E-05 0.30374 0.00014573 479.77637789492746 89.918 0.41666 89.918 89.746 90.163 0 79 30 3 0 0 0 0.0086179 1 49804 49804 89.427 29.037 1 2931300 7624 10331 5122 5243 8946 8946 0.057795184918632 EATDIALLL 9 Unmodified _EATDIALLL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5458984375 1 958.545539 957.538263 -0.02729 -2.6159E-05 -0.32991 -0.00031624 -0.3572 -0.00034239 958.5454141827927 89.973 0.32375 89.973 89.804 90.127 0 52 24 3 0 0 0 0.038285 1 49813 49813 50.855 8.7605 1 1606900 7625 10331 5122 5243 8947 8947 0.057795184918632 EATDIALLL 9 Unmodified _EATDIALLL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.777099609375 2 479.776408 957.538263 0.74975 0.00035971 -0.22667 -0.00010875 0.52308 0.00025096 479.77631664215033 98.596 0.2549 92.421 92.28 92.535 -6.1757 25 18 2 0 0 0 0.023164 1 65376 65376 60.39 2.9182 1 21774000 7626 10331 5122 5243 8948 8948 0.057795184918632 EATDIALLL 9 Unmodified _EATDIALLL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.776408 957.538263 0.55286 0.00026525 0.173 8.3001E-05 0.72586 0.00034825 479.77641234496343 90.479 0.27036 89.985 89.848 90.118 -0.49457 0.068431 -2.6059E-05 NaN 89.427 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 643420 7627 10331 5122 5243 0.057795184918632 EATDVKSTL 9 Unmodified _EATDVKSTL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2541809082031 2 482.253297 962.492041 -0.18906 -9.1172E-05 0.56347 0.00027174 0.37442 0.00018056 482.2534442237151 24.547 0.25934 24.547 24.312 24.572 0 22 12 2 0 0 0 0.46501 1 12495 12495 9.3831 2.0939 1 1522100 7628 5021 5123 5244 8949 8949 0.009294535897652167 EATGQFHVY 9 Unmodified _EATGQFHVY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-7|CEACAM1;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|47|235.7|0.0|24.49|+|2|CEACAM6,None|1;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2456665039062 2 526.245806 1050.47706 0.40002 0.00021051 -0.79135 -0.00041645 -0.39133 -0.00020594 526.2454010837287 37.823 0.64133 37.823 37.428 38.069 0 106 32 6 0 0 0 0.023164 2 20095 20095;20203 60.39 36.369 1 585720000 7629 1437;1275 5124 5245 8950;8951 8950 -0.04615993487573178 EATGQFHVY 9 Unmodified _EATGQFHVY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-7|CEACAM1;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|47|235.7|0.0|24.49|+|2|CEACAM6,None|1;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2462768554688 2 526.245806 1050.47706 -0.067294 -3.5413E-05 1.3759 0.00072404 1.3086 0.00068863 526.2465564047213 38.158 0.27895 37.887 37.739 38.018 -0.27133 41 12 4 0 0 0 0.023164 1 20055 20055 60.39 29.753 1 9887500 7630 1437;1275 5124 5245 8952 8952 -0.04615993487573178 EATGQFHVY 9 Unmodified _EATGQFHVY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-7|CEACAM1;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|47|235.7|0.0|24.49|+|2|CEACAM6,None|1;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.244873046875 2 526.245806 1050.47706 -0.069642 -3.6649E-05 0.60334 0.00031751 0.5337 0.00028086 526.2458770980044 37.789 0.25166 37.806 37.691 37.942 0.01704 26 11 3 0 0 0 0.023164 1 20055 20055 60.39 29.753 1 6075700 7631 1437;1275 5124 5245 8953 8953 -0.04615993487573178 EATGQFHVY 9 Unmodified _EATGQFHVY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-7|CEACAM1;ENSG00000170956|ENST00000357396|CEACAM3;nc|ENSG00000170956|P40198-3|CEACAM3;nc|ENSG00000170956|P40198-2|CEACAM3;chr19:41756959-41758061|47|235.7|0.0|24.49|+|2|CEACAM6,None|1;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2460327148438 2 526.245806 1050.47706 1.0856 0.00057129 -0.65122 -0.0003427 0.43438 0.00022859 526.2454788877593 42.747 0.60416 38.062 37.764 38.369 -4.6846 127 39 4 0 0 0 0.019303 3 25983 25717;25841;25983 64.236 29.835 1 821950000 7632 1437;1275 5124 5245 8954;8955;8956 8956 -0.04615993487573178 EATGQFRVY 9 Unmodified _EATGQFRVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41710039-41717458|115|20.48|0.86|4.58|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.765625 2 535.766906 1069.51926 NaN NaN NaN NaN NaN NaN NaN 38.406 1 38.406 37.906 38.906 0 0 0 0 0.14 1 20512 20512 37.974 13.953 1 7633 2314 5125 5246 8957 8957 -0.012720180792030078 EATHMCMVM 9 Carbamidomethyl (C),2 Oxidation (M) _EATHMC(Carbamidomethyl (C))M(Oxidation (M))VM(Oxidation (M))_ EATHMC(1)MVM EATHM(0.001)CM(0.999)VM(1) EATHMC(57)MVM EATHM(-29)CM(29)VM(53) 0 1 2 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2125854492188 2 571.21088 1140.40721 1.2528 0.00071561 0.39685 0.00022669 1.6497 0.0009423 571.2113387248224 20.538 0.46953 17.845 17.507 17.977 -2.693 39 27 3 0 0 0 0.026094 1 10941 10941 57.471 46.647 3 1725600 7634 4362 5126 5247 8958 8958 441 791;792;793 -0.15738022805999208 EATHMCMVM 9 Carbamidomethyl (C),2 Oxidation (M) _EATHM(Oxidation (M))C(Carbamidomethyl (C))MVM(Oxidation (M))_ EATHMC(1)MVM EATHM(0.999)CM(0.001)VM(1) EATHMC(71)MVM EATHM(33)CM(-33)VM(48) 0 1 2 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MSMS AL20221201_MKP_PDAC_01 4 571.2108764648438 2 571.21088 1140.40721 NaN NaN NaN NaN NaN NaN NaN 19.809 1 17.152 16.652 17.652 -2.6564 0 0 0 0.026323 1 10520 10520 70.716 43.832 3 7635 4362 5126 5247 8959 8959 441 791;792;793 -0.15738022805999208 EATKAVTEM 9 Unmodified _EATKAVTEM_ 0 0 0 ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;ENST00000490798.5_1_20:43550276-43564067:+|nuORF;ENST00000476056.5_1_20:43550276-43561823:+|nuORF;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4 ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3;nc|ENSG00000090621|Q13310-2|PABPC4 ENSG00000151846|ENST00000281589|PABPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2423095703125 2 490.241875 978.469197 -0.15555 -7.6258E-05 0.78093 0.00038284 0.62538 0.00030659 490.2425013106478 25.476 0.39335 22.593 22.371 22.764 -2.8831 54 21 4 0 0 0 0.0087923 2 13990 13883;13990 103.42 28.997 1 14921000 7636 1037;6150;1564 5127 5248 8960;8961 8961 -0.02089888799343953 EATPQLWNEPS 11 Unmodified _EATPQLWNEPS_ 0 0 0 REV__ENSG00000175287|ENST00000372592|PHYHD1 REV__ENSG00000175287|ENST00000372592|PHYHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.7972412109375 2 636.298767 1270.58298 0.07508 4.7773E-05 1.7071 0.0010862 1.7822 0.001134 636.3007886324788 87.818 0.31287 87.818 87.64 87.953 0 35 14 3 0 0 0 0.66428 2 48559 48559;48659 7.609 2.3121 1 1902500 + 7637 22860 5128 5249 8962;8963 8962 -0.04148702432758 EATPQLWNEPS 11 Unmodified _EATPQLWNEPS_ 0 0 0 REV__ENSG00000175287|ENST00000372592|PHYHD1 REV__ENSG00000175287|ENST00000372592|PHYHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.7972412109375 2 636.298767 1270.58298 0.07508 4.7773E-05 1.7071 0.0010862 1.7822 0.001134 636.3007886324788 87.818 0.31287 87.818 87.64 87.953 0 35 14 3 0 0 0 0.29923 1 48559 48559 7.609 2.3121 1 1902500 + 7638 22860 5128 5249 8964 8964 -0.04148702432758 EATRWPLF 8 Unmodified _EATRWPLF_ 0 0 0 REV__nc|ENSG00000148019|Q5JTW2|CEP78 REV__nc|ENSG00000148019|Q5JTW2|CEP78 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2708740234375 2 510.269084 1018.52362 0.77956 0.00039778 1.2862 0.00065632 2.0658 0.0010541 510.2695706693616 42.497 0.51159 37.812 37.544 38.055 -4.6846 61 33 2 0 0 0 0.61462 1 25755 25755 24.674 2.2213 1 43719000 + 7639 20922 5129 5250 8965 8965 0.015094911343680906 EATSHPQVSP 10 Unmodified _EATSHPQVSP_ 0 0 0 REV__ENSG00000117475|ENST00000367808|BLZF1 REV__ENSG00000117475|ENST00000367808|BLZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.752685546875 2 526.753995 1051.49344 -0.017505 -9.221E-06 -0.49482 -0.00026065 -0.51232 -0.00026987 526.7537961989436 24.333 0.23886 24.333 24.251 24.49 0 26 14 3 0 0 0 0.67459 1 12428 12428 5.7319 1.4026 1 548760 + 7640 19107 5130 5251 8966 8966 -0.030249123214616702 EATTLTIVF 9 Unmodified _EATTLTIVF_ 0 0 0 nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566833.1_1_15:43477651-43481519:+|nuORF nc|ENSG00000166946|O95273-2|CCNDBP1 nc|ENSG00000166946|O95273-2|CCNDBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.5552368164062 1 994.545539 993.538263 0.7769 0.00077266 -2.9742 -0.002958 -2.1973 -0.0021853 994.5425544130329 92.364 0.26301 86.188 86.101 86.364 -6.1757 20 15 2 0 0 0 0.070838 1 61036 61036 39.957 24.11 1 9522700 7641 7553 5131 5252 8967 8967 0.04123518491860523 EATYFAGGE 9 Unmodified _EATYFAGGE_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.70263671875 2 472.70344 943.392327 -0.5403 -0.0002554 -1.3513 -0.00063875 -1.8916 -0.00089415 472.70302650430455 55.493 0.26728 55.493 55.305 55.573 0 28 11 4 0 0 0 0.5029 1 30838 30838 7.2892 2.0586 1 2270700 + 7642 19669 5132 5253 8968 8968 -0.0816336402417619 EAVAEINAVM 10 Oxidation (M) _EAVAEINAVM(Oxidation (M))_ EAVAEINAVM(1) EAVAEINAVM(52) 0 0 1 nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000371478.2_1_5:132097291-132101152:-|nuORF nc|ENSG00000164402|Q92599-3|SEPTIN8 nc|ENSG00000164402|Q92599-3|SEPTIN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7600708007812 2 531.760432 1061.50631 0.069763 3.7097E-05 -1.1849 -0.00063011 -1.1152 -0.00059301 531.7600538803276 40.444 0.23252 40.444 40.333 40.565 0 36 11 4 0 0 0 0.074936 1 21786 21786 52.268 30.731 1 12424000 7643 7190 5133 5254 8969 8969 1247 -0.02198217253612711 EAVAGAAVL 9 Unmodified _EAVAGAAVL_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.451171875 1 800.451245 799.443968 0.4031 0.00032266 0.40938 0.00032769 0.81248 0.00065035 800.4516271880005 47.541 0.30177 47.541 47.384 47.686 0 24 13 2 0 0 0 0.0090851 1 26001 26001 85.357 27.885 1 2354300 7644 8873 5134 5255 8970 8970 0.03622424460365892 EAVARAEQL 9 Unmodified _EAVARAEQL_ 0 0 0 ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7657165527344 2 493.766906 985.519259 -0.61025 -0.00030132 -0.12221 -6.0344E-05 -0.73246 -0.00036166 493.7669400707776 28.513 0.374 28.513 28.349 28.723 0 79 20 5 0 0 0 0.0082475 2 14677 14677;14777 92.653 0 1 106130000 7645 14507 5135 5256 8971;8972 8971 0.025919819208070294 EAVARAEQL 9 Unmodified _EAVARAEQL_ 0 0 0 ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7676391601562 2 493.766906 985.519259 NaN NaN NaN NaN NaN NaN NaN 28.327 1 28.357 27.857 28.857 0.029564 0 0 0 0.027645 1 14745 14745 69.105 3.8699 1 7646 14507 5135 5256 8973 8973 0.025919819208070294 EAVARAEQL 9 Unmodified _EAVARAEQL_ 0 0 0 ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF ENST00000505073.5_1_4:91048743-91048815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7671813964844 2 493.766906 985.519259 1.0612 0.000524 0.067829 3.3492E-05 1.1291 0.00055749 493.76691663630936 32.38 0.46896 28.524 28.284 28.753 -3.8562 91 26 4 0 0 0 0.0086209 3 18463 18334;18463;18590 89.401 14.472 1 441740000 7647 14507 5135 5256 8974;8975;8976 8975 0.025919819208070294 EAVAVVRAL 9 Unmodified _EAVAVVRAL_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394;nc|ENSG00000160908|Q53GI3-3|ZNF394;ENST00000481881.1_1_7:99096270-99097704:-|nuORF ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2841491699219 2 464.284734 926.554916 0.72008 0.00033432 -1.2529 -0.00058169 -0.53279 -0.00024737 464.2839979895783 47.214 0.23616 47.214 47.103 47.339 0 17 10 2 0 0 0 0.07916 1 25850 25850 37.974 11.09 1 1888000 7648 6767 5136 5257 8977 8977 0.08870064168456793 EAVAWGQEY 9 Unmodified _EAVAWGQEY_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7371215820312 2 526.737814 1051.46108 0.79758 0.00042011 -1.605 -0.00084541 -0.80742 -0.0004253 526.7374047254726 49.475 0.28916 49.475 49.316 49.606 0 21 12 2 0 0 0 0.06187 1 27250 27250 42.095 18.946 1 3720500 7649 4784 5137 5258 8978 8978 -0.06259699724478196 EAVDIRQIY 9 Unmodified _EAVDIRQIY_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.79541015625 2 553.795663 1105.57677 0.35269 0.00019532 -0.40626 -0.00022498 -0.053568 -2.9666E-05 553.7953235223223 49.008 0.26149 49.008 48.89 49.152 0 32 12 3 0 0 0 0.0082475 1 26944 26944 92.653 58.252 1 16185000 7650 10021 5138 5259 8979 8979 0.028208241263882883 EAVDIRQIY 9 Unmodified _EAVDIRQIY_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7973022460938 2 553.795663 1105.57677 0.97774 0.00054147 0.64763 0.00035865 1.6254 0.00090012 553.7959747632519 55.665 0.36457 49.743 49.573 49.937 -5.9211 47 21 3 0 0 0 0.0087807 1 35430 35430 106.94 53.536 1 37713000 7651 10021 5138 5259 8980 8980 0.028208241263882883 EAVDIRQIY 9 Unmodified _EAVDIRQIY_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 553.795663 1105.57677 0.81152 0.00044942 0.33565 0.00018588 1.1472 0.0006353 553.7956211665684 49.376 0.17478 48.983 48.902 49.077 -0.3923 -0.012413 0.00072971 NaN 92.653 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1390200 7652 10021 5138 5259 0.028208241263882883 EAVDLVSEY 9 Unmodified _EAVDLVSEY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7449951171875 2 512.745305 1023.47606 0.93464 0.00047923 0.31265 0.00016031 1.2473 0.00063954 512.745287534026 54.401 0.26235 54.401 54.222 54.484 0 20 11 2 0 0 0 0.095405 1 30199 30199 34.102 10.954 1 1667400 7653 583 5139 5260 8981 8981 -0.034742526471404744 EAVDNLSAF 9 Unmodified _EAVDNLSAF_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2330322265625 2 483.232364 964.450176 -0.0062491 -3.0198E-06 0.61157 0.00029553 0.60532 0.00029251 483.23258469063325 56.371 0.31609 56.371 56.227 56.543 0 36 14 3 0 0 0 0.14602 2 31322 31322;31432 28.487 15.955 1 15482000 7654 4898 5140 5261 8982;8983 8982 -0.03347102098769028 EAVDNLSAF 9 Unmodified _EAVDNLSAF_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.458251953125 1 965.457453 964.450176 -0.11669 -0.00011266 0.71713 0.00069236 0.60044 0.0005797 965.4580229201738 56.373 0.24781 56.373 56.247 56.495 0 17 11 2 0 0 0 0.010818 1 31341 31341 78.149 40.175 1 2128900 7655 4898 5140 5261 8984 8984 -0.03347102098769028 EAVDNLSAF 9 Unmodified _EAVDNLSAF_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2330322265625 2 483.232364 964.450176 1.2246 0.00059178 -0.76966 -0.00037193 0.45496 0.00021985 483.23204337440006 64.7 0.32152 58.524 58.363 58.684 -6.1757 31 17 2 0 0 0 0.022193 1 41932 41932 61.357 29.052 1 14521000 7656 4898 5140 5261 8985 8985 -0.03347102098769028 EAVDSIFSY 9 Unmodified _EAVDSIFSY_ 0 0 0 nc|ENSG00000185917|Q9NVD3-4|SETD4;nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4 nc|ENSG00000185917|Q9NVD3-4|SETD4 nc|ENSG00000185917|Q9NVD3-4|SETD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7403564453125 2 515.740022 1029.46549 0.088847 4.5822E-05 0.62868 0.00032424 0.71753 0.00037006 515.7402562299866 70.269 0.37328 70.269 70.122 70.496 0 49 16 4 0 0 0 0.023164 2 39211 39114;39211 60.39 37.241 1 8956600 7657 9428 5141 5262 8986;8987 8987 -0.048062353015666304 EAVDSIFSY 9 Unmodified _EAVDSIFSY_ 0 0 0 nc|ENSG00000185917|Q9NVD3-4|SETD4;nc|ENSG00000185917|Q9NVD3-3|SETD4;ENSG00000185917|ENST00000332131|SETD4 nc|ENSG00000185917|Q9NVD3-4|SETD4 nc|ENSG00000185917|Q9NVD3-4|SETD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.740478515625 2 515.740022 1029.46549 0.30698 0.00015832 0.64259 0.00033141 0.94958 0.00048973 515.7405149078788 78.376 0.42848 72.2 72.008 72.437 -6.1757 34 26 2 0 0 0 0.30562 1 51396 51396 16.942 3.4344 1 24066000 7658 9428 5141 5262 8988 8988 -0.048062353015666304 EAVEKSPVF 9 Unmodified _EAVEKSPVF_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2671508789062 2 503.266207 1004.51786 0.56853 0.00028612 -0.53588 -0.00026969 0.032651 1.6432E-05 503.2659368711494 37.127 0.30007 37.127 36.977 37.277 0 33 14 3 0 0 0 0.036857 1 19719 19719 51.63 20.993 1 3593200 7659 325 5142 5263 8989 8989 0.01578347832048621 EAVFLRGVDIY 11 Unmodified _EAVFLRGVDIY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.3457641601562 2 641.34552 1280.67649 0.34146 0.000219 0.12458 7.9896E-05 0.46604 0.00029889 641.345518618075 71.96 0.25266 71.484 71.341 71.594 -0.47609 21 9 3 0 0 0 0.018218 1 39384 39384 59.052 24.651 1 1941800 7660 10721 5143 5264 8990 8990 0.04737641740325671 EAVGNIVKF 9 Unmodified _EAVGNIVKF_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7770690917969 2 488.776742 975.538931 0.44435 0.00021719 0.023842 1.1653E-05 0.46819 0.00022884 488.776988472024 53.072 0.22793 53.072 52.938 53.166 0 20 10 2 0 0 0 0.015445 1 29414 29414 68.081 44.932 1 3832000 7661 8996 5144 5265 8991 8991 0.05018357931567152 EAVGNIVKF 9 Unmodified _EAVGNIVKF_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7776489257812 2 488.776742 975.538931 0.61712 0.00030163 0.085703 4.189E-05 0.70282 0.00034352 488.77664016277805 53.579 0.25795 53.127 52.984 53.242 -0.45173 28 12 3 0 0 0 0.022193 1 28981 28981 61.357 38.209 1 3342200 7662 8996 5144 5265 8992 8992 0.05018357931567152 EAVIEKHVF 9 Unmodified _EAVIEKHVF_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8665161132812 3 357.865958 1070.57605 -0.63568 -0.00022749 1.6249 0.0005815 0.98924 0.00035402 357.86619400337906 34.228 0.18639 34.228 34.14 34.326 0 17 9 2 0 0 0 0.34999 1 18042 18042 10.151 3.5202 1 2499600 7663 2284 5145 5266 8993 8993 0.043580294773164496 EAVISAQYF 9 Unmodified _EAVISAQYF_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2568359375 2 514.258382 1026.50221 NaN NaN NaN NaN NaN NaN NaN 75.039 1 75.039 74.539 75.539 0 0 0 0 0.7818 1 41747 41747 6.7232 1.4925 1 + 7664 18338 5146 5267 8994 8994 -0.009979386850091032 EAVKDTGDMVF 11 Oxidation (M) _EAVKDTGDM(Oxidation (M))VF_ EAVKDTGDM(1)VF EAVKDTGDM(59)VF 0 0 1 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2811279296875 2 614.281728 1226.5489 -0.23545 -0.00014463 -0.77681 -0.00047718 -1.0123 -0.00062182 614.281154547236 35.086 0.28956 35.086 34.919 35.209 0 38 14 3 0 0 0 0.017923 1 18494 18494 59.368 8.5134 1 6671300 7665 3825 5147 5268 8995 8995 674 -0.055308669160467616 EAVKHIGY 8 Unmodified _EAVKHIGY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A;ENST00000469221.5_1_2:85766338-85768508:+|nuORF ENSG00000168906|ENST00000306434|MAT2A;ENST00000469221.5_1_2:85766338-85768508:+|nuORF ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7475891113281 2 458.747985 915.481417 -0.005895 -2.7043E-06 0.69863 0.0003205 0.69274 0.00031779 458.7478939282002 19.677 0.12956 19.677 19.616 19.746 0 27 24 2 0 0 0 0.72953 1 9857 9857 14.582 6.6715 1 851720 7666 7813;13829 5148 5269 8996 8996 0.020295157259852203 EAVKIIHDF 9 Unmodified _EAVKIIHDF_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8660583496094 3 357.865958 1070.57605 0.85147 0.00030471 -0.87129 -0.0003118 -0.019814 -7.0907E-06 357.86560991513784 42.763 0.3232 42.763 42.586 42.909 0 43 16 3 0 0 0 0.25681 1 23144 23144 13.615 4.8695 1 22573000 7667 2425 5149 5270 8997 8997 0.043580294773164496 EAVKIIHDF 9 Unmodified _EAVKIIHDF_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2958374023438 2 536.295299 1070.57605 1.0567 0.00056671 0.19384 0.00010395 1.2506 0.00067067 536.2954724698862 42.758 0.2289 42.758 42.605 42.834 0 29 11 3 0 0 0 0.01958 1 23145 23145 63.961 37.692 1 12647000 7668 2425 5149 5270 8998 8998 0.043580294773164496 EAVKIIHDF 9 Unmodified _EAVKIIHDF_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8661193847656 3 357.865958 1070.57605 0.1176 4.2085E-05 0.40176 0.00014377 0.51936 0.00018586 357.8660785499053 42.955 0.15305 42.645 42.546 42.699 -0.31039 13 6 3 0 0 0 0.32871 1 22853 22853 20.415 11.669 1 5219600 7669 2425 5149 5270 8999 8999 0.043580294773164496 EAVKIIHDF 9 Unmodified _EAVKIIHDF_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7972412109375 2 536.295299 1070.57605 1.53 0.00082054 -0.51174 -0.00027444 1.0183 0.00054609 536.2952087381137 47.708 0.44891 42.474 42.243 42.692 -5.2339 60 26 3 0 0 0 0.0026383 2 29543 29543;29686 128.57 74.74 1 22280000 7670 2425 5149 5270 9000;9001 9000 0.043580294773164496 EAVKIIHDF 9 Unmodified _EAVKIIHDF_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 357.865958 1070.57605 2.2616 0.00080936 0.37545 0.00013436 2.6371 0.00094372 357.8659401730755 47.717 0.51548 42.483 42.212 42.728 -5.2339 -0.14722 0.00056586 NaN 13.615 85 30 4 NaN NaN NaN NaN 0 NaN NaN 0 38695000 7671 2425 5149 5270 0.043580294773164496 EAVKLCDSY 9 Carbamidomethyl (C) _EAVKLC(Carbamidomethyl (C))DSY_ EAVKLC(1)DSY EAVKLC(63)DSY 0 1 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7518310546875 2 542.752607 1083.49066 -0.43027 -0.00023353 -0.455 -0.00024695 -0.88527 -0.00048048 542.7518941498414 33.886 0.4316 33.886 33.633 34.065 0 43 21 3 0 0 0 0.020973 1 17821 17821 62.573 22.623 1 7333900 7672 3910 5150 5271 9002 9002 392 -0.047745037706590665 EAVKLCDSY 9 Carbamidomethyl (C) _EAVKLC(Carbamidomethyl (C))DSY_ EAVKLC(1)DSY EAVKLC(52)DSY 0 1 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7531127929688 2 542.752607 1083.49066 0.27336 0.00014837 -0.028711 -1.5583E-05 0.24465 0.00013278 542.7527030377422 38.751 0.49468 34.3 34.028 34.523 -4.4509 74 31 3 0 0 0 0.036857 1 22940 22940 51.63 25.362 1 73033000 7673 3910 5150 5271 9003 9003 392 -0.047745037706590665 EAVKPTVGM 9 Oxidation (M) _EAVKPTVGM(Oxidation (M))_ EAVKPTVGM(1) EAVKPTVGM(72) 0 0 1 ENSG00000164323|ENST00000458385|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2478637695312 2 474.24696 946.479368 1.047 0.00049652 0.69524 0.00032971 1.7422 0.00082623 474.24745827596615 21.817 0.42017 19.082 18.9 19.32 -2.7348 54 23 3 0 0 0 0.013041 2 11749 11646;11749 71.922 35.795 1 16476000 7674 7180 5151 5272 9004;9005 9005 1244 0.003987189258964463 EAVKPTVGM 9 Unmodified _EAVKPTVGM_ 0 0 0 ENSG00000164323|ENST00000458385|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.249755859375 2 466.249503 930.484453 0.91692 0.00042751 -0.15297 -7.1324E-05 0.76395 0.00035619 466.2494657373186 34.303 0.44613 30.317 30.065 30.511 -3.9853 61 25 3 0 0 0 0.008513 1 19753 19753 99.755 53.734 1 46943000 7675 7180 5151 5273 9006 9006 0.016430227885052773 EAVKQYSSY 9 Unmodified _EAVKQYSSY_ 0 0 0 nc|ENSG00000170525|Q16875-4|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.75927734375 2 537.758746 1073.50294 -0.15372 -8.2665E-05 0.74583 0.00040108 0.59211 0.00031841 537.7591452642191 22.592 0.27113 22.592 22.423 22.694 0 31 12 3 0 0 0 0.026499 1 11466 11466 71.922 23.576 1 3842900 7676 16378 5152 5274 9007 9007 -0.03087144035930578 EAVKQYSSY 9 Unmodified _EAVKQYSSY_ 0 0 0 nc|ENSG00000170525|Q16875-4|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 537.758746 1073.50294 -0.26211 -0.00014095 1.0974 0.00059014 0.83529 0.00044918 537.7591275472013 25.537 0.25112 22.654 22.531 22.782 -2.8831 0.031057 0.00027454 NaN 71.922 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 4797000 7677 16378 5152 5274 -0.03087144035930578 EAVLIQTVY 9 Unmodified _EAVLIQTVY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2898559570312 2 518.289682 1034.56481 0.22802 0.00011818 0.66183 0.00034302 0.88985 0.0004612 518.2899433891872 65.285 0.61504 65.285 65.033 65.648 0 85 24 5 0 0 0 0.013323 2 36446 36343;36446 71.134 31.176 1 88860000 7678 5448 5153 5275 9008;9009 9009 0.04891207383184337 EAVLIQTVY 9 Unmodified _EAVLIQTVY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2896728515625 2 518.289682 1034.56481 -0.051195 -2.6534E-05 -1.0001 -0.00051833 -1.0513 -0.00054486 518.2890656869729 65.817 0.4144 65.332 65.148 65.562 -0.48428 49 17 4 0 0 0 0.013323 3 35994 35884;35892;35994 71.134 38.828 1 24417000 7679 5448 5153 5275 9010;9011;9012 9012 0.04891207383184337 EAVLIQTVY 9 Unmodified _EAVLIQTVY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2904663085938 2 518.289682 1034.56481 1.0305 0.00053411 -0.13037 -6.7571E-05 0.90014 0.00046653 518.2896357429097 72.064 0.68509 65.888 65.745 66.43 -6.1757 90 35 3 0 0 0 0.013323 3 47107 47107;47240;47352 71.134 38.828 1 175610000 7680 5448 5153 5275 9013;9014;9015 9013 0.04891207383184337 EAVLIQTVY 9 Unmodified _EAVLIQTVY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1035.567260742188 1 1035.57209 1034.56481 0.79008 0.00081819 0.5139 0.00053218 1.304 0.0013504 1035.572583300152 72.057 0.46278 65.881 65.796 66.259 -6.1757 43 23 2 0 0 0 0.0086722 2 47382 47126;47382 88.954 16.837 1 26644000 7681 5448 5153 5275 9016;9017 9017 0.04891207383184337 EAVLRLILLLI 11 Unmodified _EAVLRLILLLI_ 0 0 0 REV__ENST00000479054.5_1_3:52526660-52527062:+|nuORF REV__ENST00000479054.5_1_3:52526660-52527062:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.4321899414062 2 633.431399 1264.84824 NaN NaN NaN NaN NaN NaN NaN 103.79 1 97.611 97.111 98.111 -6.1757 0 0 0 0.94184 1 69557 69557 1.1933 0.79263 1 + 7682 27647 5154 5276 9018 9018 0.2264141849866519 EAVNGVREM 9 Unmodified _EAVNGVREM_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7454528808594 2 502.745116 1003.47568 0.58562 0.00029442 -0.24778 -0.00012457 0.33783 0.00016984 502.7452980215456 28.157 0.31574 25.009 24.861 25.177 -3.1482 34 16 3 0 0 0 0.012668 1 15653 15653 72.968 25.219 1 10169000 7683 2711 5155 5277 9019 9019 -0.025919508479887554 EAVNKLFSY 9 Unmodified _EAVNKLFSY_ 0 0 0 REV__ENST00000485067.1_1_21:30426080-30426505:+|nuORF REV__ENST00000485067.1_1_21:30426080-30426505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7799072265625 2 535.779482 1069.54441 0.81351 0.00043586 -0.39403 -0.00021111 0.41948 0.00022475 535.779310885097 42.937 0.30977 42.937 42.756 43.065 0 56 15 5 0 0 0 0.43463 1 23349 23349 10.824 0.75 1 178150000 + 7684 27769 5156 5278 9020 9020 0.0124203672337444 EAVNLFKEL 9 Unmodified _EAVNLFKEL_ 0 0 0 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7947998046875 2 531.795132 1061.57571 0.34017 0.0001809 0.52233 0.00027777 0.8625 0.00045867 531.7953231621676 69.611 0.26694 69.611 69.467 69.734 0 20 12 2 0 0 0 0.19127 1 38767 38767 24.021 12.38 1 818550 7685 10514 5157 5279 9021 9021 0.04738609757464474 EAVNLQQDAF 10 Unmodified _EAVNLQQDAF_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2874755859375 2 567.774928 1133.5353 0.25119 0.00014262 0.52674 0.00029907 0.77793 0.00044169 568.2768382573154 52.508 0.26401 52.508 52.332 52.596 0 16 11 2 0 0 0 0.13552 1 29020 29020 29.082 13.833 1 4953600 7686 473 5158 5280 9022 9022 -0.026123566329715686 EAVNNIITF 9 Unmodified _EAVNNIITF_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7712707519531 2 510.771657 1019.52876 0.42392 0.00021652 0.0060186 3.0741E-06 0.42993 0.0002196 510.77155687624935 72.58 0.34782 72.58 72.387 72.734 0 38 14 3 0 0 0 0.03568 2 40462 40360;40462 52.268 31.815 1 4715600 7687 6600 5159 5281 9023;9024 9024 0.019777502063334396 EAVNNIITF 9 Unmodified _EAVNNIITF_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7723693847656 2 510.771657 1019.52876 0.47856 0.00024443 0.91142 0.00046553 1.39 0.00070996 510.77192886488086 73.083 0.37563 72.607 72.363 72.739 -0.47588 37 16 3 0 0 0 0.1773 2 39922 39922;40027 25.399 10.561 1 2001600 7688 6600 5159 5281 9025;9026 9025 0.019777502063334396 EAVNNIITF 9 Unmodified _EAVNNIITF_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7719116210938 2 510.771657 1019.52876 0.53882 0.00027521 0.63113 0.00032236 1.1699 0.00059758 510.7717554042773 80.446 0.39444 74.27 74.085 74.479 -6.1757 29 21 2 0 0 0 0.044011 2 52746 52746;52901 47.749 20.12 1 13492000 7689 6600 5159 5281 9027;9028 9027 0.019777502063334396 EAVNSIVAL 9 Unmodified _EAVNSIVAL_ 0 0 0 nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2 nc|ENSG00000108506|Q9H0H0|INTS2 nc|ENSG00000108506|Q9H0H0|INTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2607421875 2 458.260925 914.507297 0.46252 0.00021196 -1.4034 -0.00064311 -0.94084 -0.00043115 458.2600384046153 64.786 0.4157 64.786 64.539 64.955 0 27 20 2 0 0 0 0.070838 1 36114 36114 39.957 18.211 1 1407200 7690 2576 5160 5282 9029 9029 0.04662365177614447 EAVQAISMF 9 Oxidation (M) _EAVQAISM(Oxidation (M))F_ EAVQAISM(1)F EAVQAISM(42)F 0 0 1 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000557868.1_1_15:48449979-48451083:-|nuORF;ENST00000561301.5_1_15:48444377-48451083:-|nuORF;ENST00000561351.5_1_15:48445959-48458174:-|nuORF;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000104177|Q9P2K5-2|MYEF2 ENSG00000099783|ENST00000325495|HNRNPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.244384765625 2 506.244418 1010.47428 NaN NaN NaN NaN NaN NaN NaN 54.129 1 54.129 53.629 54.629 0 0 0 0 0.10545 1 30036 30036 42.095 18.946 1 7691 1704;2183 5161 5283 9030 9030 293 -0.030535849367424817 EAVQEITEY 9 Unmodified _EAVQEITEY_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2559814453125 2 541.256037 1080.49752 0.051889 2.8085E-05 -0.32542 -0.00017613 -0.27353 -0.00014805 541.2558639766955 44.086 0.29808 44.086 43.93 44.228 0 42 16 4 0 0 0 0.0086904 2 23932 23932;24032 107.19 52.413 1 72923000 7692 4375 5162 5284 9031;9032 9031 -0.039508676184368596 EAVQEITEY 9 Unmodified _EAVQEITEY_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2556762695312 2 541.256037 1080.49752 0.55256 0.00029908 -0.40297 -0.00021811 0.14959 8.0968E-05 541.2557654342934 51.526 0.39682 45.877 45.707 46.104 -5.649 51 24 3 0 0 0 0.094149 2 32410 32410;32543 34.402 16.267 1 107380000 7693 4375 5162 5284 9033;9034 9033 -0.039508676184368596 EAVQNMVSH 9 Unmodified _EAVQNMVSH_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MSMS AL20221201_MKP_PDAC_01 4 507.7379150390625 2 507.737291 1013.46003 NaN NaN NaN NaN NaN NaN NaN 28.248 1 25.099 24.599 25.599 -3.1482 0 0 0 0.0084204 1 15740 15740 96.111 52.253 1 7694 4131 5163 5285 9035 9035 -0.0461623736501906 EAVRSIPEY 9 Unmodified _EAVRSIPEY_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3108520507812 2 532.274564 1062.53457 -0.044002 -2.3421E-05 -1.9103 -0.0010168 -1.9543 -0.0010402 532.2735463694119 35.446 0.32568 35.446 35.209 35.534 0 22 16 2 0 0 0 0.04079 1 18704 18704 43.772 13.136 1 3849900 7695 6643 5164 5286 9036 9036 0.0058084871798200766 EAVRSIPEY 9 Unmodified _EAVRSIPEY_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MSMS AL20221201_MKP_PDAC_01 4 532.2745971679688 2 532.274564 1062.53457 NaN NaN NaN NaN NaN NaN NaN 40.06 1 35.53 35.03 36.03 -4.5294 0 0 0 0.15231 1 23872 23872 36.506 5.8697 1 7696 6643 5164 5286 9037 9037 0.0058084871798200766 EAVSEQKRNI 10 Unmodified _EAVSEQKRNI_ 0 0 0 nc|ENSG00000118557|Q8TBY8-3|PMFBP1;nc|ENSG00000118557|Q8TBY8-4|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 nc|ENSG00000118557|Q8TBY8-3|PMFBP1 MSMS AL20221201_MKP_PDAC_01 4 587.25341796875 2 587.314751 1172.61495 NaN NaN NaN NaN NaN NaN NaN 22.988 1 20.21 19.71 20.71 -2.7784 0 0 0 0.8671 1 12407 12407 9.3831 1.2276 1 7697 3380 5165 5287 9038 9038 0.03554710041044018 EAVSRIKMA 9 Unmodified _EAVSRIKMA_ 0 0 0 ENSG00000107282|ENST00000265381|APBA1 ENSG00000107282|ENST00000265381|APBA1 ENSG00000107282|ENST00000265381|APBA1 MSMS AL20221201_MKP_PDAC_01 4 502.7822875976562 2 502.781502 1003.54845 NaN NaN NaN NaN NaN NaN NaN 20.78 1 18.087 17.587 18.587 -2.693 0 0 0 0.25233 1 11085 11085 27.629 6.0918 1 7698 2487 5166 5288 9039 9039 0.0468180294543572 EAVTLGTLAV 10 Unmodified _EAVTLGTLAV_ 0 0 0 REV__ENSG00000110955|ENST00000262030|ATP5F1B REV__ENSG00000110955|ENST00000262030|ATP5F1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.281982421875 2 487.281857 972.549162 0.24844 0.00012106 0.47473 0.00023133 0.72317 0.00035239 487.2821178635583 63.56 0.26361 63.56 63.445 63.709 0 31 13 3 0 0 0 0.22149 1 35534 35534 10.074 0 1 4361100 + 7699 18731 5167 5289 9040 9040 0.06178920866148019 EAVTPSPSF 9 Unmodified _EAVTPSPSF_ 0 0 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7293701171875 2 467.729458 933.444362 0.49453 0.0002313 -0.20853 -9.7534E-05 0.286 0.00013377 467.7291722780867 45.673 0.20127 45.673 45.567 45.768 0 16 9 2 0 0 0 0.019303 1 24910 24910 64.236 23.788 1 2721500 7700 6524 5168 5290 9041 9041 -0.02502200610433647 EAVVNDVLF 9 Unmodified _EAVVNDVLF_ 0 0 0 ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP ENSG00000100744|ENST00000555181|GSKIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2667236328125 2 503.266207 1004.51786 0.61704 0.00031054 -0.87786 -0.0004418 -0.26082 -0.00013126 503.26572925685923 74.948 0.4231 74.948 74.763 75.186 0 78 26 4 0 0 0 0.038285 2 41664 41664;41770 50.855 23.971 1 6053700 7701 1871 5169 5291 9042;9043 9042 0.015783478320372524 EAVWAVTNY 9 Unmodified _EAVWAVTNY_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000415694.1_1_9:109932192-109932378:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7568969726562 2 526.756007 1051.49746 0.40617 0.00021395 0.49076 0.00025851 0.89693 0.00047246 526.756331587525 62.784 0.48438 62.784 62.589 63.073 0 57 20 4 0 0 0 0.013323 2 34991 34991;35094 71.134 55.286 1 9051000 7702 9058 5170 5292 9044;9045 9044 -0.026228228277886956 EAVWAVTNY 9 Unmodified _EAVWAVTNY_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000415694.1_1_9:109932192-109932378:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7562255859375 2 526.756007 1051.49746 0.20634 0.00010869 1.3514 0.00071187 1.5578 0.00082056 526.7564559242013 63.429 0.37727 62.943 62.75 63.127 -0.48617 39 16 3 0 0 0 0.019303 1 34568 34568 64.236 46.101 1 3470700 7703 9058 5170 5292 9046 9046 -0.026228228277886956 EAVWAVTNY 9 Unmodified _EAVWAVTNY_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2;ENST00000415694.1_1_9:109932192-109932378:-|nuORF ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7570190429688 2 526.756007 1051.49746 0.94076 0.00049555 -1.0963 -0.00057747 -0.15552 -8.1921E-05 526.7559892411623 70.306 0.33416 64.13 63.928 64.262 -6.1757 29 18 2 0 0 0 0.022193 1 45881 45881 61.357 37.337 1 44138000 7704 9058 5170 5292 9047 9047 -0.026228228277886956 EAVYLNDSTY 10 Unmodified _EAVYLNDSTY_ 0 0 0 ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1 ENSG00000204580|ENST00000376568|DDR1 ENSG00000204580|ENST00000376568|DDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7676391601562 2 587.766768 1173.51898 0.39345 0.00023126 3.0555 0.0017959 3.4489 0.0020272 587.7686582239928 46.577 0.19522 46.577 46.461 46.656 0 21 8 3 0 0 0 0.2178 1 25434 25434 32.305 16.458 1 1968400 7705 10304 5171 5293 9048 9048 -0.06083482589701816 EAWADDVERF 10 Unmodified _EAWADDVERF_ 0 0 0 nc|ENSG00000154889|Q53F39-4|MPPE1;ENSG00000154889|ENST00000588072|MPPE1;ENST00000592894.5_1_18:11886654-11897104:-|nuORF;nc|ENSG00000154889|Q53F39-5|MPPE1;ENST00000592447.5_1_18:11886825-11897263:-|nuORF;ENST00000589731.5_1_18:11886458-11897263:-|nuORF;nc|ENSG00000154889|Q53F39-2|MPPE1;nc|ENSG00000154889|Q53F39-3|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2781372070312 2 619.277835 1236.54112 -0.22653 -0.00014029 -0.76917 -0.00047633 -0.99571 -0.00061662 619.2776366975581 55.321 0.33506 55.321 55.126 55.461 0 40 14 4 0 0 0 0.017375 2 30685 30685;30798 78.06 54.04 1 8855400 7706 6355 5172 5294 9049;9050 9049 -0.06769258121289567 EAWADDVERF 10 Unmodified _EAWADDVERF_ 0 0 0 nc|ENSG00000154889|Q53F39-4|MPPE1;ENSG00000154889|ENST00000588072|MPPE1;ENST00000592894.5_1_18:11886654-11897104:-|nuORF;nc|ENSG00000154889|Q53F39-5|MPPE1;ENST00000592447.5_1_18:11886825-11897263:-|nuORF;ENST00000589731.5_1_18:11886458-11897263:-|nuORF;nc|ENSG00000154889|Q53F39-2|MPPE1;nc|ENSG00000154889|Q53F39-3|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2760009765625 2 619.277835 1236.54112 1.1996 0.00074291 -0.82879 -0.00051325 0.37085 0.00022966 619.276951096766 62.425 0.40878 56.249 56.073 56.482 -6.1757 35 21 2 0 0 0 0.00089362 2 40254 40254;40386 114.19 85.105 1 20188000 7707 6355 5172 5294 9051;9052 9051 -0.06769258121289567 EAWAGRISY 9 Unmodified _EAWAGRISY_ 0 0 0 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2606811523438 2 526.761623 1051.50869 0.23049 0.00012141 -0.40268 -0.00021212 -0.17219 -9.0705E-05 526.7613751502564 45.389 0.19073 45.389 45.269 45.46 0 16 10 2 0 0 0 0.010301 1 24699 24699 79.596 31.25 1 24585000 7708 9152 5173 5295 9053 9053 -0.015000007336084309 EAWAGRISY 9 Unmodified _EAWAGRISY_ 0 0 0 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.76171875 2 526.761623 1051.50869 -0.026185 -1.3793E-05 -0.5474 -0.00028835 -0.57359 -0.00030214 526.7614294995816 45.685 0.21172 45.36 45.235 45.447 -0.32425 17 11 2 0 0 0 0.012668 1 24387 24387 72.968 8.7316 1 51463000 7709 9152 5173 5295 9054 9054 -0.015000007336084309 EAWAGRISY 9 Unmodified _EAWAGRISY_ 0 0 0 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7628784179688 2 526.761623 1051.50869 1.0512 0.00055376 -0.17563 -9.2514E-05 0.87562 0.00046124 526.7614997631617 51.031 0.43245 45.382 45.154 45.586 -5.649 71 26 4 0 0 0 0.0086209 2 31979 31979;32111 89.401 22.096 1 270840000 7710 9152 5173 5295 9055;9056 9055 -0.015000007336084309 EAWASKDATY 10 Unmodified _EAWASKDATY_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2617797851562 2 571.261653 1140.50875 -0.34498 -0.00019707 0.44627 0.00025493 0.10129 5.7862E-05 571.2617900654647 30.625 0.34819 30.625 30.443 30.791 0 61 16 5 0 0 0 6.7445E-07 2 15862 15862;15961 133.05 84.706 1 52990000 7711 7502 5174 5296 9057;9058 9057 -0.05588045524268637 EAWASKDATY 10 Unmodified _EAWASKDATY_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.26220703125 2 571.261653 1140.50875 1.0775 0.00061551 -0.080123 -4.5771E-05 0.99734 0.00056974 571.2615684716056 34.89 0.602 30.795 30.518 31.12 -4.0951 65 35 2 0 0 0 0.00013919 2 20208 20078;20208 118.07 81.941 1 165730000 7712 7502 5174 5296 9059;9060 9060 -0.05588045524268637 EAWAVPVVL 9 Unmodified _EAWAVPVVL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2823486328125 2 492.28166 982.548768 0.5683 0.00027976 -0.1663 -8.1866E-05 0.402 0.0001979 492.2816558048003 94.98 0.32275 94.612 94.473 94.795 -0.36815 25 16 2 0 0 0 0.30562 1 51881 51881 16.942 9.0321 1 327960 7713 8065 5175 5297 9061 9061 0.056795459369595847 EAWDEVGAKP 10 Unmodified _EAWDEVGAKP_ 0 0 0 REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2684326171875 2 551.264196 1100.51384 0.66071 0.00036423 2.7403 0.0015107 3.4011 0.0018749 551.2655038161099 59.777 0.54728 59.777 59.355 59.902 0 90 24 5 0 0 0 0.54684 1 33184 33184 13.906 4.5586 1 31480000 + 7714 24706 5176 5298 9062 9062 -0.03239741661673179 EAWDEVGAKP 10 Unmodified _EAWDEVGAKP_ 0 0 0 REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF REV__ENST00000064778.8_1_11:73116189-73116408:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.264196 1100.51384 0.21656 0.00011938 5.3937 0.0029733 5.6102 0.0030927 551.7674021080878 60.097 0.16282 59.606 59.49 59.652 -0.49079 -0.085143 0.0022033 NaN 13.906 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3095800 + 7715 24706 5176 5298 -0.03239741661673179 EAWHELAELY 10 Unmodified _EAWHELAELY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.79931640625 2 630.798403 1259.58225 0.35264 0.00022244 1.8018 0.0011366 2.1545 0.001359 630.8002636414674 67.13 0.27805 67.13 67.016 67.294 0 26 11 3 0 0 0 0.063761 1 37429 37429 54.774 38.926 1 1568200 7716 2204 5177 5299 9063 9063 -0.03715497081793728 EAWHELAELY 10 Unmodified _EAWHELAELY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3005981445312 2 630.798403 1259.58225 0.3031 0.00019119 0.082152 5.1821E-05 0.38525 0.00024302 630.7986396118504 67.677 0.2951 67.194 67.075 67.37 -0.48219 30 12 3 0 0 0 0.02987 1 36964 36964 68.081 55.84 1 3265200 7717 2204 5177 5299 9064 9064 -0.03715497081793728 EAWHELAELY 10 Unmodified _EAWHELAELY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.301513671875 2 630.798403 1259.58225 0.96555 0.00060907 0.074632 4.7078E-05 1.0402 0.00065614 630.7982829849923 79.849 0.55508 73.673 73.387 73.942 -6.1757 51 33 2 0 0 0 0.02987 2 52296 52296;52445 68.081 52.832 1 21689000 7718 2204 5177 5299 9065;9066 9065 -0.03715497081793728 EAWKFLLGY 9 Unmodified _EAWKFLLGY_ 0 0 0 nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF nc|ENSG00000104946|Q9HA65-3|TBC1D17 nc|ENSG00000104946|Q9HA65-3|TBC1D17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.8013305664062 2 563.800217 1125.58588 0.97737 0.00055104 -0.81344 -0.00045862 0.16393 9.2426E-05 563.7995305902056 98.555 0.11687 92.38 92.324 92.441 -6.1757 13 8 2 0 0 0 0.0086722 1 65372 65372 88.954 61.325 1 38862000 7719 2261 5178 5300 9067 9067 0.02811217482712891 EAWNEEGKAVW 11 Unmodified _EAWNEEGKAVW_ 0 0 0 nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS;ENST00000545511.5_1_12:125609137-125626756:+|nuORF;nc|ENSG00000081760|Q86V21-3|AACS nc|ENSG00000081760|Q86V21-2|AACS nc|ENSG00000081760|Q86V21-2|AACS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8065795898438 2 659.806759 1317.59897 0.05248 3.4627E-05 0.24641 0.00016259 0.29889 0.00019721 659.806654702692 50.247 0.19371 50.247 50.114 50.308 0 18 8 3 0 0 0 0.29923 1 27716 27716 7.609 5.1105 1 1900000 7720 1329 5179 5301 9068 9068 -0.047129961958717104 EAWNGFVAA 9 Unmodified _EAWNGFVAA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4510498046875 1 964.452308 963.445031 0.10563 0.00010188 -1.2834 -0.0012377 -1.1777 -0.0011359 964.4509343727311 62.433 0.42522 62.433 62.23 62.655 0 68 27 3 0 0 0 0.0036082 2 34849 34744;34849 123.45 75.105 1 25027000 7721 1799;4064 5180 5302 9069;9070 9070 -0.0381536117071164 EAWNGFVAA 9 Unmodified _EAWNGFVAA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 964.4526977539062 1 964.452308 963.445031 0.36444 0.00035149 -0.48767 -0.00047033 -0.12322 -0.00011884 964.4519005208828 63.014 0.3638 62.528 62.346 62.709 -0.48617 47 17 3 0 0 0 0.0085164 2 34385 34283;34385 99.799 59.842 1 22569000 7722 1799;4064 5180 5302 9071;9072 9072 -0.0381536117071164 EAWNGFVAA 9 Unmodified _EAWNGFVAA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.451904296875 1 964.452308 963.445031 0.64626 0.00062329 -0.086669 -8.3588E-05 0.5596 0.0005397 964.4520028660353 69.915 0.58054 63.739 63.467 64.048 -6.1757 83 32 3 0 0 0 0.0085164 3 45766 45531;45649;45766 107.19 63.672 1 231940000 7723 1799;4064 5180 5302 9073;9074;9075 9075 -0.0381536117071164 EAWNGFVAA 9 Unmodified _EAWNGFVAA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000128335|ENST00000358502|APOL2 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7308654785156 2 482.729792 963.445031 0.83734 0.00040421 0.62264 0.00030057 1.46 0.00070478 482.72949499253207 69.946 0.4332 63.77 63.525 63.958 -6.1757 49 24 3 0 0 0 0.013323 2 45600 45600;45726 71.134 33.029 1 39312000 7724 1799;4064 5180 5302 9076;9077 9076 -0.0381536117071164 EAWQTGFF 8 Unmodified _EAWQTGFF_ 0 0 0 REV__nc|ENSG00000211454|Q8NHP1|AKR7L REV__nc|ENSG00000211454|Q8NHP1|AKR7L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7537231445312 2 493.224342 984.434132 0.33694 0.00016619 1.4108 0.00069582 1.7477 0.00086201 493.22489554947106 67.33 0.35207 67.33 67.153 67.505 0 34 14 3 0 0 0 8.7369 1 37479 37479 8.5933 2.8329 1 4510500 + 7725 29921 5181 5303 9078 9078 -0.05870763544987767 EAWRLLSTY 9 Unmodified _EAWRLLSTY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7987060546875 2 569.798206 1137.58186 0.28513 0.00016247 0.344 0.00019601 0.62914 0.00035848 569.7984524967085 65.549 0.21578 65.064 64.979 65.195 -0.48428 15 9 2 0 0 0 0.022461 1 35779 35779 75.761 29.74 1 1744700 7726 583 5182 5304 9079 9079 0.018571279890011283 EAWRLLSTY 9 Unmodified _EAWRLLSTY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7992553710938 2 569.798206 1137.58186 0.6493 0.00036997 0.77351 0.00044075 1.4228 0.00081071 569.798528719642 65.088 0.24223 65.088 64.978 65.22 7.6294E-06 21 11 2 0 0 0 0.022461 1 35666 35666 75.761 37.787 1 4371300 7727 583 5182 5304 9080 9080 0.018571279890011283 EAWRNVTI 8 Unmodified _EAWRNVTI_ 0 0 0 ENST00000367079.3_1_1:207252363-207252585:+|nuORF ENST00000367079.3_1_1:207252363-207252585:+|nuORF ENST00000367079.3_1_1:207252363-207252585:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.7664489746094 2 494.764166 987.513779 NaN NaN NaN NaN NaN NaN NaN 31.797 1 28.101 27.601 28.601 -3.6958 0 0 0 0.59568 1 18041 18041 34.402 2.0962 1 7728 12220 5183 5305 9081 9081 0.019523031289850223 EAWVSSSLF 9 Unmodified _EAWVSSSLF_ 0 0 0 ENST00000511309.5_1_5:176730986-176733129:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1 ENST00000511309.5_1_5:176730986-176733129:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.250732421875 2 513.250557 1024.48656 0.24355 0.000125 -1.4901 -0.00076478 -1.2465 -0.00063978 513.2497811979782 81.684 0.32616 81.684 81.515 81.841 0 32 17 2 0 0 0 0.55144 1 45274 45274 4.3292 0.38484 1 976640 7729 7853 5184 5306 9082 9082 -0.024702252020460946 EAWVSVLQNS 10 Unmodified _EAWVSVLQNS_ 0 0 0 nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 nc|ENSG00000088280|Q8TDY4-3|ASAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1932983398438 3 378.192623 1131.55604 -0.55565 -0.00021014 1.8422 0.00069672 1.2866 0.00048658 378.19328969737586 17.557 0.082344 17.571 17.533 17.615 0.013865 27 17 2 0 0 0 0.69626 1 8732 8732 3.3196 0.24738 1 772650 7730 1482 5185 5307 9083 9083 -0.004477662532735849 EAYANIAEL 9 Unmodified _EAYANIAEL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2474975585938 2 497.248015 992.481476 0.46595 0.00023169 -0.45794 -0.00022771 0.0080123 3.9841E-06 497.2472725566121 49.188 0.34744 49.188 48.986 49.333 0 30 16 3 0 0 0 0.23158 1 27048 27048 20.454 1.1966 1 5530900 7731 8844 5186 5308 9084 9084 -0.015065290646703033 EAYEAPLLF 9 Unmodified _EAYEAPLLF_ 0 0 0 REV__ENSG00000119685|ENST00000298832|TTLL5 REV__ENSG00000119685|ENST00000298832|TTLL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.768310546875 2 526.768583 1051.52261 0.19107 0.00010065 -1.5808 -0.00083272 -1.3897 -0.00073207 526.767970349492 71.726 0.35638 71.726 71.505 71.861 0 18 13 2 0 0 0 0.49272 1 39918 39918 7.9102 0 1 949840 + 7732 19202 5187 5309 9085 9085 -0.0010876802521124773 EAYFMVTAF 9 Unmodified _EAYFMVTAF_ 0 0 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7515258789062 2 539.749336 1077.48412 NaN NaN NaN NaN NaN NaN NaN 60.348 1 60.348 59.848 60.848 0 0 0 0 0.49196 1 33653 33653 16.942 7.5592 1 + 7733 23418 5188 5310 9086 9086 -0.05152396931362091 EAYGKPVKY 9 Unmodified _EAYGKPVKY_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.782470703125 2 527.782025 1053.5495 -0.098854 -5.2173E-05 0.46927 0.00024767 0.37041 0.0001955 527.7824013111459 20.271 0.15159 20.271 20.175 20.326 0 20 9 3 0 0 0 0.32871 1 10169 10169 15.847 7.937 1 699430 7734 10275 5189 5311 9087 9087 0.024863405860060084 EAYGKPVKY 9 Unmodified _EAYGKPVKY_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1904907226562 3 352.190442 1053.5495 -0.41855 -0.00014741 -1.3109 -0.0004617 -1.7295 -0.00060911 352.18974257103207 20.271 0.2507 20.271 20.106 20.357 0 40 16 3 0 0 0 0.070838 1 10179 10179 29.841 22.232 1 3075900 7735 10275 5189 5311 9088 9088 0.024863405860060084 EAYGKPVKY 9 Unmodified _EAYGKPVKY_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7822265625 2 527.782025 1053.5495 0.51194 0.00027019 -1.3349 -0.00070455 -0.82299 -0.00043436 527.7813627452922 22.534 0.21189 19.756 19.632 19.844 -2.7784 19 11 2 0 0 0 0.013041 1 12105 12105 71.922 39.617 1 3319700 7736 10275 5189 5311 9089 9089 0.024863405860060084 EAYGLDKIEF 10 Unmodified _EAYGLDKIEF_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.79541015625 2 592.795329 1183.5761 0.012562 7.4465E-06 0.11524 6.8315E-05 0.1278 7.5762E-05 592.7953536784833 64.733 0.27177 64.733 64.63 64.901 0 26 11 3 0 0 0 0.13008 1 36099 36099 42.312 14.684 1 4316000 7737 3014;9881 5190 5312 9090 9090 -0.008340153133531203 EAYGLDKIEF 10 Unmodified _EAYGLDKIEF_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7958374023438 2 592.795329 1183.5761 0.2726 0.00016159 1.1549 0.00068463 1.4275 0.00084622 592.7960445548255 65.31 0.39751 64.826 64.684 65.081 -0.48428 28 18 2 0 0 0 0.28276 1 35627 35627 28.495 5.7582 1 3109600 7738 3014;9881 5190 5312 9091 9091 -0.008340153133531203 EAYHSVIKY 9 Unmodified _EAYHSVIKY_ 0 0 0 ENST00000489032.5_1_2:3464059-3481567:+|nuORF;ENST00000479897.5_1_2:3447569-3469487:+|nuORF;ENST00000469147.5_1_2:3428415-3471239:+|nuORF;ENSG00000171853|ENST00000324266|TRAPPC12 ENST00000489032.5_1_2:3464059-3481567:+|nuORF ENST00000489032.5_1_2:3464059-3481567:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.1861267089844 3 370.525713 1108.55531 1.6019 0.00059354 -2.3112 -0.00085636 -0.70931 -0.00026282 370.5246631137502 34.254 0.2257 30.269 30.115 30.34 -3.9853 20 12 2 0 0 0 0.20399 1 19659 19659 10.8 6.2706 1 6923500 7739 8151 5191 5313 9092 9092 0.0053743909768400044 EAYIPLTKSN 10 Unmodified _EAYIPLTKSN_ 0 0 0 REV__ENSG00000178222|ENST00000433731|RNF212 REV__ENSG00000178222|ENST00000433731|RNF212 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.3042602539062 2 568.303321 1134.59209 0.4166 0.00023676 -0.34101 -0.0001938 0.07559 4.2958E-05 568.3030488097119 69.294 0.31999 69.294 69.103 69.423 0 24 13 2 0 0 0 0.63399 1 38546 38546 9.3831 0.40688 1 1956200 + 7740 23029 5192 5314 9093 9093 0.030176909235706262 EAYKEQDL 8 Unmodified _EAYKEQDL_ 0 0 0 REV__ENST00000458516.5_1_6:30296744-30297088:+|nuORF REV__ENST00000458516.5_1_6:30296744-30297088:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7423706054688 2 498.237647 994.460741 0.25506 0.00012708 3.2035 0.0015961 3.4586 0.0017232 498.23889900810974 69.756 0.31168 69.756 69.598 69.91 0 22 14 2 0 0 0 0.75262 1 38829 38829 12.532 0 1 744680 + 7741 27277 5193 5315 9094 9094 -0.03671119444334181 EAYMNKVEL 9 Oxidation (M) _EAYM(Oxidation (M))NKVEL_ EAYM(1)NKVEL EAYM(68)NKVEL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.767822265625 2 556.768257 1111.52196 NaN NaN NaN NaN NaN NaN NaN 35.393 1 35.393 34.893 35.893 0 0 0 0 0.028685 1 18710 18710 67.838 17.905 1 + 7742 165;150 5194 5316 9095 9095 11 -0.02933930736548973 EAYNAVVRY 9 Unmodified _EAYNAVVRY_ 0 0 0 nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF nc|ENSG00000161791|Q8IVF7-2|FMNL3 nc|ENSG00000161791|Q8IVF7-2|FMNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7728271484375 2 542.774731 1083.53491 0.17244 9.3596E-05 -1.3968 -0.00075814 -1.2243 -0.00066454 542.7735721866436 37.603 0.21351 37.603 37.51 37.724 0 27 10 3 0 0 0 0.0095811 1 20015 20015 81.613 7.1903 1 4879400 7743 6808 5195 5317 9096 9096 -0.003517315621365924 EAYNAVVRY 9 Unmodified _EAYNAVVRY_ 0 0 0 nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF nc|ENSG00000161791|Q8IVF7-2|FMNL3 nc|ENSG00000161791|Q8IVF7-2|FMNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7762451171875 2 542.774731 1083.53491 0.71357 0.00038731 0.1865 0.00010123 0.90007 0.00048854 542.7750004338429 42.89 0.39892 38.205 38.072 38.47 -4.6846 31 25 2 0 0 0 0.019303 1 25965 25965 64.236 6.765 1 9830900 7744 6808 5195 5317 9097 9097 -0.003517315621365924 EAYNAVVRY 9 Unmodified _EAYNAVVRY_ 0 0 0 nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF nc|ENSG00000161791|Q8IVF7-2|FMNL3 nc|ENSG00000161791|Q8IVF7-2|FMNL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.774731 1083.53491 0.20184 0.00010955 0.59969 0.0003255 0.80152 0.00043505 542.7748884018623 37.915 0.36508 37.915 37.743 38.108 0 -0.081917 -0.00026572 NaN 64.236 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6358100 7745 6808 5195 5317 -0.003517315621365924 EAYNAVVRY 9 Unmodified _EAYNAVVRY_ 0 0 0 nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF nc|ENSG00000161791|Q8IVF7-2|FMNL3 nc|ENSG00000161791|Q8IVF7-2|FMNL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.774731 1083.53491 -0.18071 -9.8083E-05 1.9876 0.0010788 1.8069 0.00098075 542.7756457046427 38.142 0.23152 37.871 37.761 37.992 -0.27133 -0.12627 0.001241 NaN 64.236 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1501500 7746 6808 5195 5317 -0.003517315621365924 EAYPDHTQF 9 Unmodified _EAYPDHTQF_ 0 0 0 nc|ENSG00000151500|Q9P016-2|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2381591796875 2 554.240721 1106.46689 -0.54096 -0.00029982 0.7326 0.00040604 0.19164 0.00010622 554.2410891493131 32.168 0.41471 32.168 31.94 32.355 0 62 20 5 0 0 0 0.015688 3 16728 16720;16728;16836 65.235 40.244 1 61559000 7747 6121 5196 5318 9098;9099;9100 9099 -0.08208601212800204 EAYPDHTQF 9 Unmodified _EAYPDHTQF_ 0 0 0 nc|ENSG00000151500|Q9P016-2|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2410888671875 2 554.240721 1106.46689 0.73285 0.00040618 0.38255 0.00021203 1.1154 0.0006182 554.2408284895213 36.61 0.47698 32.327 32.173 32.65 -4.2835 86 29 4 0 0 0 0.014182 3 21333 21333;21455;21585 75.761 35.804 1 86485000 7748 6121 5196 5318 9101;9102;9103 9101 -0.08208601212800204 EAYPDHTQF 9 Unmodified _EAYPDHTQF_ 0 0 0 nc|ENSG00000151500|Q9P016-2|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 554.240721 1106.46689 0.14761 8.1809E-05 0.14782 8.1927E-05 0.29542 0.00016374 554.241011073498 32.155 0.17997 32.026 31.94 32.12 -0.12915 -0.1094 -0.00044784 NaN 75.761 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 687610 7749 6121 5196 5318 -0.08208601212800204 EAYPDHTQF 9 Unmodified _EAYPDHTQF_ 0 0 0 nc|ENSG00000151500|Q9P016-2|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.240721 1106.46689 -0.071006 -3.9355E-05 1.0689 0.00059244 0.99791 0.00055308 554.2409154472848 31.991 0.15944 32.021 31.925 32.084 0.030106 -0.11441 0.00057318 NaN 75.761 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 818980 7750 6121 5196 5318 -0.08208601212800204 EAYTDHATY 9 Unmodified _EAYTDHATY_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7254028320312 2 535.724904 1069.43525 -0.12003 -6.4301E-05 0.5305 0.0002842 0.41047 0.0002199 535.7251500349802 22.965 0.36666 22.965 22.796 23.163 0 64 20 4 0 0 0 0.0083087 2 11739 11645;11739 97.075 77.984 1 16967000 7751 9843 5197 5319 9104;9105 9105 -0.09668593966739536 EAYTDHATY 9 Unmodified _EAYTDHATY_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7249755859375 2 535.724904 1069.43525 0.24237 0.00012985 0.69317 0.00037135 0.93555 0.0005012 535.7250569937858 26.331 0.29749 23.38 23.244 23.542 -2.9511 37 15 3 0 0 0 0.00856 1 14468 14468 100.37 66.269 1 13481000 7752 9843 5197 5319 9106 9106 -0.09668593966739536 EAYVHVNQY 9 Unmodified _EAYVHVNQY_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7636108398438 2 561.764363 1121.51417 -0.68741 -0.00038616 0.66032 0.00037094 -0.027095 -1.5221E-05 561.7647743007421 32.8 0.3108 32.8 32.677 32.988 0 37 15 3 0 0 0 0.010877 1 17135 17135 77.984 56.238 1 17663000 7753 4113 5198 5320 9107 9107 -0.04172321941791779 EAYVHVNQY 9 Unmodified _EAYVHVNQY_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7658081054688 2 561.764363 1121.51417 1.4296 0.00080312 1.127 0.00063313 2.5567 0.0014363 561.7650341693603 37.503 0.53044 33.22 32.955 33.486 -4.2835 77 31 3 0 0 0 0.06187 1 22020 22020 42.095 29.563 1 42853000 7754 4113 5198 5320 9108 9108 -0.04172321941791779 ECARAIYAY 9 Carbamidomethyl (C) _EC(Carbamidomethyl (C))ARAIYAY_ EC(1)ARAIYAY EC(54)ARAIYAY 0 1 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7604370117188 2 558.760766 1115.50698 0.40939 0.00022875 -0.24235 -0.00013542 0.16704 9.3337E-05 558.7604798810764 39.883 0.45369 35.354 35.128 35.582 -4.5294 79 35 3 0 0 0 0.032796 1 23769 23769 53.833 29.812 1 92087000 7755 1923 5199 5321 9109 9109 191 -0.04615377813888699 ECASCCRDSW 10 Unmodified _ECASCCRDSW_ 0 0 0 ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENST00000561573.1_1_15:90801417-90806222:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2500610351562 2 580.201901 1158.38925 0.69292 0.00040203 -3.4476 -0.0020003 -2.7547 -0.0015983 580.1995289959658 51.047 0.45662 51.047 50.821 51.278 0 55 23 3 0 0 0 0.23634 1 28130 28130 6.7232 0.96273 1 10522000 7756 15328 5200 5322 9110 9110 -0.18361021736495786 ECEGQCERTN 10 Unmodified _ECEGQCERTN_ 0 0 0 REV__ENSG00000101282|ENST00000217260|RSPO4 REV__ENSG00000101282|ENST00000217260|RSPO4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.148193359375 3 390.1501 1167.42847 NaN NaN NaN NaN NaN NaN NaN 14.173 1 14.143 13.643 14.643 -0.030868 0 0 0 1.005 1 6875 6875 0.12286 0 1 + 7757 18155 5201 5323 9111 9111 -0.14854598181273104 ECEGQCERTN 10 Unmodified _ECEGQCERTN_ 0 0 0 REV__ENSG00000101282|ENST00000217260|RSPO4 REV__ENSG00000101282|ENST00000217260|RSPO4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1492614746094 3 390.1501 1167.42847 NaN NaN NaN NaN NaN NaN NaN 16.543 1 16.544 16.044 17.044 0.0010548 0 0 0 1.005 1 8163 8163 0.12286 0 1 + 7758 18155 5201 5323 9112 9112 -0.14854598181273104 ECEGQCERTN 10 Unmodified _ECEGQCERTN_ 0 0 0 REV__ENSG00000101282|ENST00000217260|RSPO4 REV__ENSG00000101282|ENST00000217260|RSPO4 MSMS AL20221201_MKP_PDAC_01 4 390.1488952636719 3 390.1501 1167.42847 NaN NaN NaN NaN NaN NaN NaN 5.6084 1 3.1264 2.6264 3.6264 -2.482 0 0 0 1.005 1 2846 2846 0.12286 0 1 + 7759 18155 5201 5323 9113 9113 -0.14854598181273104 ECHGQMILF 9 Unmodified _ECHGQMILF_ 0 0 0 REV__nc|ENSG00000165521|Q05BV3|EML5 REV__nc|ENSG00000165521|Q05BV3|EML5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.247802734375 2 539.246437 1076.47832 NaN NaN NaN NaN NaN NaN NaN 72.179 1 72.179 71.679 72.679 0 0 0 0 0.82396 1 40193 40193 4.756 0 1 + 7760 22017 5202 5324 9114 9114 -0.0568581871468723 ECIWSHPIDSY 11 Unmodified _ECIWSHPIDSY_ 0 0 0 REV__ENSG00000171988|ENST00000399262|JMJD1C REV__ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.29248046875 2 675.29517 1348.57579 0.027148 1.8333E-05 -0.50374 -0.00034018 -0.4766 -0.00032184 675.2948683620627 65.869 0.54868 65.384 65.101 65.65 -0.48428 58 23 3 0 0 0 0.71036 1 35898 35898 3.2813 0 1 4294600 + 7761 22618 5203 5325 9115 9115 -0.08455758304830852 ECIWSHPIDSY 11 Unmodified _ECIWSHPIDSY_ 0 0 0 REV__ENSG00000171988|ENST00000399262|JMJD1C REV__ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.2958984375 2 675.29517 1348.57579 0.93653 0.00063243 -0.057814 -3.9041E-05 0.87871 0.00059339 675.2952986950077 72.064 0.83171 65.888 65.637 66.468 -6.1757 112 43 3 0 0 0 0.35243 2 47221 47221;47342 24.021 8.7721 1 58715000 + 7762 22618 5203 5325 9116;9117 9116 -0.08455758304830852 ECIWSHPIDSY 11 Unmodified _ECIWSHPIDSY_ 0 0 0 REV__ENSG00000171988|ENST00000399262|JMJD1C REV__ENSG00000171988|ENST00000399262|JMJD1C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 675.7977294921875 2 675.29517 1348.57579 0.93653 0.00063243 -0.057814 -3.9041E-05 0.87871 0.00059339 675.2952986950077 72.064 0.83171 65.888 65.637 66.468 -6.1757 112 43 3 0 0 0 0.27972 1 47085 47085 18.146 0 1 58715000 + 7763 22618 5203 5325 9118 9118 -0.08455758304830852 ECLEDLVSF 9 Carbamidomethyl (C) _EC(Carbamidomethyl (C))LEDLVSF_ EC(1)LEDLVSF EC(42)LEDLVSF 0 1 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2530517578125 2 556.25244 1110.49033 1.1637 0.00064731 -0.82607 -0.0004595 0.33762 0.0001878 556.2518539429341 91.726 0.32256 85.55 85.29 85.612 -6.1757 21 17 2 0 0 0 0.06187 1 60644 60644 42.095 25.152 1 9673700 7764 16693 5204 5326 9119 9119 1029 -0.06049923490490983 ECLNQLPDI 9 Unmodified _ECLNQLPDI_ 0 0 0 REV__ENST00000590010.1_1_17:66131241-66131388:-|nuORF REV__ENST00000590010.1_1_17:66131241-66131388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7561645507812 2 522.755149 1043.49575 0.43711 0.0002285 0.28769 0.00015039 0.7248 0.00037889 522.7559463693303 75.996 0.33439 75.996 75.791 76.126 0 35 15 3 0 0 0 0.46501 1 42195 42195 9.3831 2.0939 1 5293100 + 7765 20558 5205 5327 9120 9120 -0.02426199908018134 ECLPDTCPPY 10 Unmodified _ECLPDTCPPY_ 0 0 0 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2333984375 2 569.233193 1136.45183 0.49232 0.00028024 0.37123 0.00021131 0.86354 0.00049156 569.233471270904 67.925 0.50755 67.925 67.639 68.146 0 46 24 2 0 0 0 0.69064 1 37910 37910 3.9444 0.3479 1 1757100 7766 9751 5206 5328 9121 9121 -0.11093552396664563 ECLRGYHHFR 10 Unmodified _ECLRGYHHFR_ 0 0 0 ENST00000409020.5_1_2:201768463-201768559:+|nuORF ENST00000409020.5_1_2:201768463-201768559:+|nuORF ENST00000409020.5_1_2:201768463-201768559:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8800659179688 3 439.880496 1316.61966 0.34134 0.00015015 -0.48991 -0.0002155 -0.14857 -6.5354E-05 439.8803751491438 18.547 0.14833 18.553 18.493 18.641 0.0060482 16 8 3 0 0 0 0.6785 1 9406 9406 2.8433 0 1 781250 7767 12951 5207 5329 9122 9122 -0.025986842972088198 ECLSRPWR 8 Unmodified _ECLSRPWR_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.29736328125 2 523.763643 1045.51273 0.20623 0.00010802 -0.56357 -0.00029517 -0.35733 -0.00018716 523.7628124996888 55.169 0.31256 54.691 54.528 54.841 -0.47798 29 14 3 0 0 0 8.7369 1 29874 29874 12.532 0 1 1545700 7768 4535 5208 5330 9123 9123 -0.008202345115705612 ECMLRNVSV 9 Unmodified _ECMLRNVSV_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.759521484375 2 525.757169 1049.49979 -0.35992 -0.00018923 1.4677 0.00077167 1.1078 0.00058244 525.7577869652806 60.961 0.22339 60.472 60.374 60.598 -0.48932 25 10 3 0 0 0 0.41742 1 33189 33189 11.64 0 1 9881700 7769 3790 5209 5331 9124 9124 -0.022984336859735777 ECPPDTYLSI 10 Unmodified _ECPPDTYLSI_ 0 0 0 ENST00000470853.1_1_7:86541162-86542454:-|nuORF;nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2;ENSG00000164659|ENST00000450689|ELAPOR2 ENST00000470853.1_1_7:86541162-86542454:-|nuORF ENST00000470853.1_1_7:86541162-86542454:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.26025390625 2 569.260265 1136.50598 0.47287 0.00026918 -0.59043 -0.00033611 -0.11756 -6.6925E-05 569.2599811947898 68.37 0.69867 68.37 68.165 68.864 0 75 31 4 0 0 0 0.52888 1 38147 38147 14.838 8.1151 1 4721800 7770 7224 5210 5332 9125 9125 -0.056816369734633554 ECQFTNKST 9 Unmodified _ECQFTNKST_ 0 0 0 ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM ENSG00000187790|ENST00000267430|FANCM ENSG00000187790|ENST00000267430|FANCM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1578674316406 3 353.158813 1056.45461 NaN NaN NaN NaN NaN NaN NaN 79.957 1 79.957 79.457 80.457 0 0 0 0 0.85447 1 44402 44402 0.96228 0 1 7771 9595 5211 5333 9126 9126 -0.07135960947516651 ECQYQFRHRRW 11 Unmodified _ECQYQFRHRRW_ 0 0 0 ENST00000497817.1_1_3:55513315-55514913:-|nuORF;nc|ENSG00000114251|P41221-2|WNT5A;ENSG00000114251|ENST00000264634|WNT5A ENST00000497817.1_1_3:55513315-55514913:-|nuORF ENST00000497817.1_1_3:55513315-55514913:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2593383789062 3 536.924876 1607.7528 0.13807 7.4136E-05 0.35674 0.00019154 0.49481 0.00026568 536.924975738066 76.782 0.35655 76.832 76.676 77.033 0.05011 37 14 4 0 0 0 0.74429 1 42352 42352 0.094841 0 1 7273100 7772 3026 5212 5334 9127 9127 -0.02676864911359189 ECTHGGKRKWT 11 Unmodified _ECTHGGKRKWT_ 0 0 0 ENSG00000177888|ENST00000367405|ZBTB41;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF ENSG00000177888|ENST00000367405|ZBTB41 ENSG00000177888|ENST00000367405|ZBTB41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.572021484375 3 434.883906 1301.62989 NaN NaN NaN NaN NaN NaN NaN 20.049 1 20.078 19.578 20.578 0.028357 0 0 0 0.94181 1 10137 10137 1.2148 0.14337 1 7773 8715 5213 5335 9128 9128 -0.008861213626005338 ECTWDSKLIL 10 Unmodified _ECTWDSKLIL_ 0 0 0 nc|nan|A0A1B0GVB3-2|C7orf78;ENSG00000226690|ENST00000636804|unknown nc|nan|A0A1B0GVB3-2|C7orf78 nc|nan|A0A1B0GVB3-2|C7orf78 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3029174804688 2 604.305007 1206.59546 NaN NaN NaN NaN NaN NaN NaN 16.202 1 16.207 15.707 16.707 0.0050564 0 0 0 1.0024 1 8113 8113 0.40072 0.40072 1 7774 10592 5214 5336 9129 9129 0.00042617705935299455 ECVRKVYQTNG 11 Unmodified _ECVRKVYQTNG_ 0 0 0 SLC25A36|p.D171N|1|0.28|ENSG00000114120|chr3:140973774-140973774|G/A|missense_variant SLC25A36|p.D171N|1|0.28|ENSG00000114120|chr3:140973774-140973774|G/A|missense_variant SLC25A36|p.D171N|1|0.28|ENSG00000114120|chr3:140973774-140973774|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8851013183594 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 54.568 1 54.501 54.001 55.001 -0.066936 0 0 0 0.84279 1 29636 29636 10.016 3.3928 1 7775 30162 5215 5337 9130 9130 -0.006769608023205365 ECWDGWNGNAC 11 Unmodified _ECWDGWNGNAC_ 0 0 0 nc|ENSG00000198542|O95965-2|ITGBL1;nc|ENSG00000198542|O95965-3|ITGBL1;ENSG00000198542|ENST00000376180|ITGBL1 nc|ENSG00000198542|O95965-2|ITGBL1 nc|ENSG00000198542|O95965-2|ITGBL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7188110351562 2 627.718772 1253.42299 NaN NaN NaN NaN NaN NaN NaN 4.4863 1 4.4863 3.9863 4.9863 0 0 0 0 0.9435 1 2160 2160 0 0 1 7776 10104 5216 5338 9131 9131 -0.19358276973071042 EDAILIIQG 9 Unmodified _EDAILIIQG_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.5441284179688 1 971.540788 970.533512 0.42741 0.00041525 0.11039 0.00010725 0.5378 0.00052249 971.5414826565128 60.862 0.16626 60.862 60.718 60.885 0 10 6 2 0 0 0 0.23158 1 33914 33914 20.454 1.1966 1 560530 7777 16391 5217 5339 9132 9132 0.04706634349099659 EDAVRVRQ 8 Unmodified _EDAVRVRQ_ 0 0 0 REV__nc|ENSG00000103855|Q5ZPR3-3|CD276 REV__nc|ENSG00000103855|Q5ZPR3-3|CD276 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.5595092773438 1 972.522118 971.514842 0.14878 0.00014469 0.84755 0.00082426 0.99632 0.00096895 972.5213546286602 63.79 0.43537 63.79 63.636 64.071 0 33 17 4 0 0 0 0.80722 1 35557 35557 2.3027 0.4585 1 2188500 + 7778 18326 5218 5340 9133 9133 0.0279451749790951 EDCGCDFP 8 Unmodified _EDCGCDFP_ 0 0 0 REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2 REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.140869140625 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 8.4726 1 8.4726 7.9726 8.9726 0 0 0 0 0.97444 1 4041 4041 0.69038 0.69038 1 + 7779 18534 5219 5341 9134 9134 -0.17870901107528425 EDCKPRHIEW 10 Unmodified _EDCKPRHIEW_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;CTNND1|p.R919Hfs*5|1|0.11|ENSG00000198561|chr11:57815448-57815448|G/-|frameshift_variant;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;ENST00000527599.1_1_11:57569484-57571277:+|nuORF ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.8099365234375 2 656.808779 1311.60301 1.3991 0.00091891 0.34148 0.00022429 1.7405 0.0011432 656.8085920859539 91.52 0.61157 91.557 91.165 91.777 0.036507 56 22 4 0 0 0 0.32072 1 50887 50887 26.268 5.8145 1 13585000 7780 222 5220 5342 9135 9135 -0.04033229973811103 EDCNCDSNCY 10 Unmodified _EDCNCDSNCY_ 0 0 0 REV__ENSG00000134538|ENST00000256958|SLCO1B1 REV__ENSG00000134538|ENST00000256958|SLCO1B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7266235351562 2 583.165181 1164.31581 NaN NaN NaN NaN NaN NaN NaN 66.518 1 66.518 66.018 67.018 0 0 0 0 1.0047 1 37099 37099 0.45834 0.45834 1 + 7781 19991 5221 5343 9136 9136 -0.2597761496963358 EDDEDDDC 8 Unmodified _EDDEDDDC_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.1277160644531 2 478.127102 954.239651 0.26115 0.00012486 0.88451 0.00042291 1.1457 0.00054777 478.1272808921165 102.44 0.047577 102.44 102.42 102.47 0 4 2 2 0 0 0 0.81107 1 56505 56505 0 0 1 272600 7782 16039 5222 5344 9137 9137 -0.23929972273765543 EDDEDDDCQ 9 Unmodified _EDDEDDDCQ_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20221201_MKP_PDAC_01 4 542.3618774414062 2 542.15639 1082.29823 NaN NaN NaN NaN NaN NaN NaN 109.23 1 103.05 102.55 103.55 -6.1757 0 0 0 0.85798 1 72959 72959 0.52476 0.12405 1 7783 16039 5223 5345 9138 9138 -0.23962915699303267 EDDEEDESCCA 11 Unmodified _EDDEEDESCCA_ 0 0 0 REV__ENSG00000139977|ENST00000556492|NAA30 REV__ENSG00000139977|ENST00000556492|NAA30 MSMS AL20221201_MKP_PDAC_01 4 415.4581604003906 3 415.457036 1243.34928 NaN NaN NaN NaN NaN NaN NaN 33.453 1 29.467 28.967 29.967 -3.9853 0 0 0 0.9435 1 19185 19185 0 0 1 + 7784 20443 5224 5346 9139 9139 -0.26266334716706297 EDDEGYQAY 9 Unmodified _EDDEGYQAY_ 0 0 0 REV__ENSG00000108819|ENST00000612501|PPP1R9B REV__ENSG00000108819|ENST00000612501|PPP1R9B MSMS AL20221201_MKP_PDAC_01 4 545.2034912109375 2 545.204001 1088.39345 NaN NaN NaN NaN NaN NaN NaN 43.377 1 38.612 38.112 39.112 -4.7648 0 0 0 0.7453 1 26342 26342 7.9102 2.1497 1 + 7785 18629 5225 5347 9140 9140 -0.14721194445928631 EDDGLFIG 8 Unmodified _EDDGLFIG_ 0 0 0 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.392578125 1 865.39379 864.386513 0.3462 0.0002996 -0.043627 -3.7754E-05 0.30257 0.00026184 865.3938462097385 52.988 0.1596 52.988 52.88 53.039 0 10 7 2 0 0 0 0.5284 1 29340 29340 32.117 7.4431 1 660950 + 7786 17290 5226 5348 9141 9141 -0.05110462535833449 EDDLQRWYRTM 11 Unmodified _EDDLQRWYRTM_ 0 0 0 REV__ENST00000514589.5_1_4:76407750-76415940:-|nuORF REV__ENST00000514589.5_1_4:76407750-76415940:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.8515625 2 756.848632 1511.68271 NaN NaN NaN NaN NaN NaN NaN 50.609 1 50.609 50.109 51.109 0 0 0 0 0.94002 1 27906 27906 2.4985 1.169 1 + 7787 21810 5227 5349 9142 9142 -0.05266208090483815 EDDRMSVNSGS 11 Unmodified _EDDRMSVNSGS_ 0 0 0 ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1;ENST00000465961.1_1_3:136067979-136076626:-|nuORF ENSG00000118007|ENST00000383202|STAG1 ENSG00000118007|ENST00000383202|STAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.4994201660156 3 399.499786 1195.47753 0.33762 0.00013488 0.99706 0.00039833 1.3347 0.00053321 399.50013805446764 93.077 0.30982 86.901 86.671 86.981 -6.1757 31 19 2 0 0 0 0.68427 1 61471 61471 2.6312 0.19645 1 11857000 7788 3346 5228 5350 9143 9143 -0.11238986620674041 EDEDEADKNP 10 Unmodified _EDEDEADKNP_ 0 0 0 REV__ENSG00000162494|ENST00000376085|LRRC38 REV__ENSG00000162494|ENST00000376085|LRRC38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2297973632812 2 581.230747 1160.44694 0.36657 0.00021306 -1.434 -0.00083351 -1.0675 -0.00062045 581.2297697357969 67.867 0.40101 67.867 67.675 68.076 0 70 19 5 0 0 0 0.69377 2 37795 37795;37895 3.5965 0.70727 1 10770000 + 7789 21651 5229 5351 9144;9145 9144 -0.126864417340812 EDEDEDYAEL 10 Unmodified _EDEDEDYAEL_ 0 0 0 REV__nc|ENSG00000183718|Q96A61-2|TRIM52 REV__nc|ENSG00000183718|Q96A61-2|TRIM52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2311401367188 2 614.230413 1226.44627 0.67328 0.00041355 0.45998 0.00028253 1.1333 0.00069608 614.2307659203176 53.769 0.21149 53.769 53.665 53.876 0 15 9 2 0 0 0 0.69064 1 29857 29857 3.9444 0 1 1876300 + 7790 23370 5230 5352 9146 9146 -0.1578928117378382 EDEDEEDYDD 10 Unmodified _EDEDEEDYDD_ 0 0 0 REV__ENSG00000277494|ENST00000622500|GPIHBP1 REV__ENSG00000277494|ENST00000622500|GPIHBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.4712829589844 3 425.133603 1272.37898 NaN NaN NaN NaN NaN NaN NaN 57.617 1 57.617 57.117 58.117 0 0 0 0 1.0019 1 32066 32066 0.15932 0 1 + 7791 24665 5231 5353 9147 9147 -0.24631356175405017 EDEEEEDADCY 11 Unmodified _EDEEEEDADCY_ 0 0 0 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 ENSG00000107341|ENST00000263228|UBE2R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.714599609375 2 673.71427 1345.41399 NaN NaN NaN NaN NaN NaN NaN 93.228 1 93.228 92.728 93.728 0 0 0 0 0.9435 1 51544 51544 0 0 1 7792 2492 5232 5354 9148 9148 -0.24490436639075597 EDEENQVLVKF 11 Unmodified _EDEENQVLVKF_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.3323364257812 2 675.332807 1348.65106 NaN NaN NaN NaN NaN NaN NaN 21.371 1 21.385 20.885 21.885 0.013796 0 0 0 0.9434 1 10940 10940 0.26902 0.26902 1 + 7793 20108 5233 5355 9149 9149 -0.009318775727933826 EDEFSDEEDF 10 Unmodified _EDEFSDEEDF_ 0 0 0 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.22412109375 2 631.222588 1260.43062 0.43363 0.00027372 0.61261 0.0003867 1.0462 0.00066041 631.2231558186526 57.626 0.47207 57.626 57.419 57.891 0 83 22 5 0 0 0 0.69064 2 32019 32019;32120 3.9444 0 1 26025000 7794 956 5234 5356 9150;9151 9150 -0.18917567690846226 EDENQHRVCF 10 Unmodified _EDENQHRVCF_ 0 0 0 ENSG00000119714|ENST00000650645|GPR68 ENSG00000119714|ENST00000650645|GPR68 ENSG00000119714|ENST00000650645|GPR68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.7728881835938 2 638.772394 1275.53023 0.037738 2.4106E-05 0.79308 0.0005066 0.83082 0.00053071 638.7730487353966 79.6 0.25251 79.6 79.523 79.775 0 12 10 2 0 0 0 0.71123 1 44235 44235 1.6526 0.32309 1 294780 7795 3462 5235 5357 9152 9152 -0.09650983767210164 EDENTDNWI 9 Unmodified _EDENTDNWI_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2301635742188 2 568.23055 1134.44655 0.33268 0.00018904 -1.0328 -0.00058689 -0.70015 -0.00039785 568.2299759683664 92.595 0.38467 92.595 92.395 92.78 0 109 24 6 0 0 0 0.59218 1 51125 51125 1.8442 0 1 3004600 + 7796 22194 5236 5358 9153 9153 -0.11529816663278325 EDERFKDHEWR 11 Unmodified _EDERFKDHEWR_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 773.8551635742188 2 773.855303 1545.69605 0.57912 0.00044816 -0.62478 -0.00048349 -0.04566 -3.5334E-05 773.8548438795151 82.266 0.65985 76.09 75.712 76.372 -6.1757 71 36 3 0 0 0 0.46131 3 53982 53857;53982;54119 18.373 14.184 1 20479000 + 7797 18599 5237 5359 9154;9155;9156 9155 -0.05496633986854249 EDEVCTQTAY 10 Unmodified _EDEVCTQTAY_ 0 0 0 nc|ENSG00000103404|Q70CQ4-2|USP31;ENSG00000103404|ENST00000219689|USP31 nc|ENSG00000103404|Q70CQ4-2|USP31 nc|ENSG00000103404|Q70CQ4-2|USP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7346801757812 2 579.734611 1157.45467 -0.34813 -0.00020182 1.2562 0.00072829 0.90811 0.00052646 579.7350336126046 55.308 0.22052 55.308 55.193 55.414 0 15 9 2 0 0 0 0.67033 1 30736 30736 6.2058 1.4498 1 1284100 7798 2137 5238 5360 9157 9157 -0.1177600573817017 EDEVFFFFF 9 Unmodified _EDEVFFFFF_ 0 0 0 ENST00000316626.5_2_3:119812374-119812428:-|nuORF ENST00000316626.5_2_3:119812374-119812428:-|nuORF ENST00000316626.5_2_3:119812374-119812428:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3110961914062 2 613.773865 1225.53318 0.54247 0.00033295 2.6783 0.0016439 3.2208 0.0019769 613.7740696234653 53.126 0.1151 53.126 53.08 53.195 0 5 4 2 0 0 0 0.21367 1 29442 29442 2.0598 0.21551 1 574560 7799 11739 5239 5361 9158 9158 -0.07056785370764374 EDEWQSTSL 9 Unmodified _EDEWQSTSL_ 0 0 0 REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7366943359375 2 547.735468 1093.45638 -0.63244 -0.00034641 0.63376 0.00034713 0.0013103 7.1769E-07 547.7370770993255 32.934 0.47013 32.934 32.639 33.109 0 60 23 4 0 0 0 0.14602 1 17246 17246 28.487 3.0875 1 3861700 + 7800 17633 5240 5362 9159 9159 -0.08660628657889902 EDFAASLPAF 10 Unmodified _EDFAASLPAF_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2604370117188 2 534.25584 1066.49713 NaN NaN NaN NaN NaN NaN NaN 69.702 1 69.702 69.202 70.202 0 0 0 0 0.76313 1 38830 38830 13.906 2.2658 1 + 7801 20128 5241 5363 9160 9160 -0.03346242547627298 EDFCPFASRA 10 Unmodified _EDFCPFASRA_ 0 0 0 REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP REV__nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5039978027344 3 381.502691 1141.48624 0.89585 0.00034177 1.1209 0.00042764 2.0168 0.00076941 381.5031291084184 17.496 0.30267 14.909 14.775 15.077 -2.5866 104 59 2 0 0 0 0.69917 1 9220 9220 1.4551 0 1 7741300 + 7802 18867 5242 5364 9161 9161 -0.07883968193550572 EDFLGFMNEF 10 Unmodified _EDFLGFMNEF_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.76806640625 2 624.765714 1247.51688 -0.3573 -0.00022323 1.8322 0.0011447 1.4749 0.00092149 624.7678849859454 76.948 0.39941 76.468 76.276 76.676 -0.47945 50 17 4 0 0 0 0.52888 1 42085 42085 14.838 4.7643 1 5625300 7803 9937 5243 5365 9162 9162 -0.09698234599181887 EDFRFPPE 8 Unmodified _EDFRFPPE_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7405395507812 2 518.740357 1035.46616 0.63338 0.00032856 -0.77971 -0.00040447 -0.14633 -7.5907E-05 518.7399116727162 57.606 0.49596 57.606 57.395 57.891 0 60 23 3 0 0 0 0.71527 1 32004 32004 15.847 15.847 1 57762000 7804 9200 5244 5366 9163 9163 -0.05015395861846628 EDFSQNWKAL 10 Unmodified _EDFSQNWKAL_ 0 0 0 ENST00000494045.5_1_9:136278026-136283036:-|nuORF;nc|ENSG00000148300|Q9GZR2-2|REXO4;ENSG00000148300|ENST00000371942|REXO4 ENST00000494045.5_1_9:136278026-136283036:-|nuORF ENST00000494045.5_1_9:136278026-136283036:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7545776367188 2 619.296027 1236.5775 0.34852 0.00021584 -2.7889 -0.0017272 -2.4404 -0.0015113 619.2944679146761 80.955 0.4419 80.955 80.84 81.281 0 22 20 2 0 0 0 0.23634 1 44989 44989 6.7232 0.51738 1 343830 7805 5913 5245 5367 9164 9164 -0.0313238122457733 EDFSTEYSLF 10 Unmodified _EDFSTEYSLF_ 0 0 0 ENSG00000227051|ENST00000555004|C14orf132 ENSG00000227051|ENST00000555004|C14orf132 ENSG00000227051|ENST00000555004|C14orf132 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2686157226562 2 619.266601 1236.51865 1.1501 0.00071219 0.16625 0.00010296 1.3163 0.00081515 619.2665429503395 79.262 0.47569 73.086 72.829 73.304 -6.1757 62 26 3 0 0 0 0.44373 1 51823 51823 19.257 4.4187 1 39776000 7806 10594 5246 5368 9165 9165 -0.09014902309559147 EDFVEDVSKS 10 Unmodified _EDFVEDVSKS_ 0 0 0 REV__ENSG00000162368|ENST00000371873|CMPK1;REV__ENST00000371871.8_1_1:47838675-47842417:+|nuORF REV__ENSG00000162368|ENST00000371873|CMPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7631225585938 2 577.764226 1153.5139 0.3171 0.00018321 -1.8723 -0.0010817 -1.5552 -0.00089853 577.7632343920907 85.102 0.21899 85.102 85.05 85.269 0 20 11 2 0 0 0 0.67033 1 47173 47173 6.2058 0.47393 1 592090 + 7807 21635;26099 5247 5369 9166 9166 -0.05671786452330707 EDGQDDSDDDD 11 Unmodified _EDGQDDSDDDD_ 0 0 0 REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.1840209960938 2 613.184191 1224.35383 NaN NaN NaN NaN NaN NaN NaN 12.8 1 12.8 12.3 13.3 0 0 0 0 0.9435 1 6058 6058 0 0 1 + 7808 19399 5248 5370 9167 9167 -0.24937410977963737 EDGRFFERT 9 Unmodified _EDGRFFERT_ 0 0 0 ENST00000593466.5_1_19:17420363-17424875:+|nuORF ENST00000593466.5_1_19:17420363-17424875:+|nuORF ENST00000593466.5_1_19:17420363-17424875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1837158203125 3 386.184238 1155.53089 0.10779 4.1627E-05 -2.1153 -0.00081691 -2.0076 -0.00077529 386.1830549947161 61.379 0.31425 61.379 61.215 61.529 0 19 14 2 0 0 0 0.55775 1 34245 34245 2.2828 0.5405 1 1149700 7809 15736 5249 5371 9168 9168 -0.04065821055860397 EDGVQHQF 8 Unmodified _EDGVQHQF_ 0 0 0 ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2148132324219 2 480.214506 958.414459 -0.17947 -8.6184E-05 0.014722 7.0698E-06 -0.16475 -7.9114E-05 480.214402837041 24.274 0.49526 24.274 23.995 24.49 0 85 28 4 0 0 0 0.80624 1 12512 12512 2.8892 0.31174 1 10657000 7810 2742 5250 5372 9169 9169 -0.06641139555756581 EDGWVLTPDF 10 Unmodified _EDGWVLTPDF_ 0 0 0 ENST00000449870.5_2_19:10801619-10802189:+|nuORF ENST00000449870.5_2_19:10801619-10802189:+|nuORF ENST00000449870.5_2_19:10801619-10802189:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.517333984375 3 393.516995 1177.52915 0.61358 0.00024145 0.67906 0.00026722 1.2926 0.00050868 393.5171095483346 47.824 0.18782 47.471 47.347 47.535 -0.3526 13 8 2 0 0 0 0.69377 1 25652 25652 1.7423 0.54893 1 1551800 7811 13507 5251 5373 9170 9170 -0.05250874864486832 EDHEDDNAF 9 Unmodified _EDHEDDNAF_ 0 0 0 REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.4687805175781 3 364.468592 1090.38395 -0.35207 -0.00012832 1.0075 0.0003672 0.65542 0.00023888 364.4690652150828 56.234 0.43394 56.234 55.969 56.403 0 33 20 3 0 0 0 0.61381 1 31310 31310 0.23584 0 1 3789200 + 7812 27054 5252 5374 9171 9171 -0.15762962731469088 EDHTKREEI 9 Unmodified _EDHTKREEI_ 0 0 0 ENST00000471507.5_1_1:16693778-16719770:+|nuORF ENST00000471507.5_1_1:16693778-16719770:+|nuORF ENST00000471507.5_1_1:16693778-16719770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7846069335938 2 578.783284 1155.55202 -0.29741 -0.00017213 -0.016667 -9.6468E-06 -0.31408 -0.00018178 578.7834367258745 26.273 0.21947 26.273 26.187 26.407 0 19 10 2 0 0 0 0.031062 1 13495 13495 54.774 8.7526 1 2774400 7813 13875 5253 5375 9172 9172 -0.01953855746978661 EDHTLHYY 8 Unmodified _EDHTLHYY_ 0 0 0 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.235107421875 2 539.235439 1076.45632 -0.24077 -0.00012983 1.3406 0.00072287 1.0998 0.00059304 539.2361304953166 29.089 0.15961 29.089 29.002 29.161 0 13 7 3 0 0 0 8.7369 1 15075 15075 4.756 0.42677 1 1553700 7814 20083 5254 5376 9173 9173 -0.07884583867257788 EDIGPFSPD 9 Unmodified _EDIGPFSPD_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.3037414550781 2 488.716547 975.418542 1.4338 0.00070072 -0.31245 -0.0001527 1.1214 0.00054802 488.7164856230791 41.838 0.37632 37.23 37.077 37.453 -4.6079 34 23 2 0 0 0 0.19891 1 25261 25261 11.64 0 1 5462800 7815 7178 5255 5377 9174 9174 -0.0701509485271572 EDIYRRSHYDK 11 Unmodified _EDIYRRSHYDK_ 0 0 0 REV__ENSG00000013441|ENST00000321356|CLK1 REV__ENSG00000013441|ENST00000321356|CLK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.57568359375 3 494.575907 1480.70589 -0.41416 -0.00020483 0.11616 5.7448E-05 -0.298 -0.00014738 494.57594797767365 18.755 0.14729 18.755 18.678 18.825 0 38 11 4 0 0 0 0.72131 1 9321 9321 2.2527 0.92309 1 3417400 + 7816 17075 5256 5378 9175 9175 -0.015234459815019363 EDIYTSSCS 9 Unmodified _EDIYTSSCS_ 0 0 0 REV__ENSG00000181518|ENST00000641687|OR8D4 REV__ENSG00000181518|ENST00000641687|OR8D4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.6988830566406 2 502.697497 1003.38044 0.74298 0.00037349 0.53128 0.00026707 1.2743 0.00064056 502.6979903130878 57.614 0.42247 57.614 57.395 57.817 0 81 20 6 0 0 0 0.5029 1 32018 32018 7.2892 2.96 1 25445000 + 7817 23208 5257 5379 9176 9176 -0.12111348829671442 EDKPSYCFSP 10 Unmodified _EDKPSYCFSP_ 0 0 0 REV__nc|ENSG00000105825|P48307-2|TFPI2 REV__nc|ENSG00000105825|P48307-2|TFPI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7515258789062 2 586.750064 1171.48558 0.20807 0.00012209 3.2434 0.0019031 3.4515 0.0020252 586.752476015325 36.056 0.25234 36.056 35.914 36.167 0 26 12 3 0 0 0 0.50362 1 19074 19074 16.149 1.5674 1 7895400 + 7818 18464 5258 5380 9177 9177 -0.09330807633273253 EDKRIMLDI 9 Unmodified _EDKRIMLDI_ 0 0 0 nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6;nc|ENSG00000063015|Q53EL9-2|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 MSMS AL20221201_MKP_PDAC_01 4 378.2075805664062 3 378.205875 1131.59579 NaN NaN NaN NaN NaN NaN NaN 25.02 1 22.137 21.637 22.637 -2.8831 0 0 0 0.63508 1 13660 13660 11.495 2.5185 1 7819 854 5259 5381 9178 9178 0.03526037425785944 EDKYERLI 8 Unmodified _EDKYERLI_ 0 0 0 REV__ENSG00000254585|ENST00000650528|MAGEL2 REV__ENSG00000254585|ENST00000650528|MAGEL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2868041992188 2 533.282389 1064.55022 0.23002 0.00012267 1.2981 0.00069224 1.5281 0.00081491 533.2836340016095 56.602 0.40283 56.602 56.361 56.763 0 50 17 4 0 0 0 0.55032 1 31469 31469 30.225 0 1 10530000 + 7820 24524 5260 5382 9179 9179 0.020531352350417365 EDLIMSCRQAP 11 Unmodified _EDLIMSCRQAP_ 0 0 0 REV__ENSG00000100065|ENST00000251973|CARD10 REV__ENSG00000100065|ENST00000251973|CARD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.7991943359375 2 631.797023 1261.57949 -0.38352 -0.00024231 0.51814 0.00032736 0.13461 8.5048E-05 631.7973069221738 33.424 0.7057 33.424 33.285 33.991 0 98 49 3 0 0 0 0.35681 1 17491 17491 23.79 1.1317 1 55655000 + 7821 18008 5261 5383 9180 9180 -0.04083411802616865 EDLIMSCRQAP 11 Unmodified _EDLIMSCRQAP_ 0 0 0 REV__ENSG00000100065|ENST00000251973|CARD10 REV__ENSG00000100065|ENST00000251973|CARD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7990112304688 2 631.797023 1261.57949 0.49398 0.00031209 1.4505 0.00091645 1.9445 0.0012285 631.7980651982989 38.332 0.44719 33.963 33.733 34.18 -4.3689 81 27 4 0 0 0 0.24216 1 22511 22511 29.841 4.8496 1 71733000 + 7822 18008 5261 5383 9181 9181 -0.04083411802616865 EDLKGNPLNL 10 Unmodified _EDLKGNPLNL_ 0 0 0 ENST00000481894.1_1_1:115138166-115167938:-|nuORF ENST00000481894.1_1_1:115138166-115167938:-|nuORF ENST00000481894.1_1_1:115138166-115167938:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.29833984375 2 556.800946 1111.58734 0.87658 0.00048808 -1.8078 -0.0010066 -0.93123 -0.00051851 557.2995068862197 66.095 0.7046 59.919 59.525 60.23 -6.1757 63 40 2 0 0 0 0.56348 1 43046 43046 13.042 1.4022 1 31138000 7823 14091 5262 5384 9182 9182 0.03600806780787025 EDLMNFFPL 9 Unmodified _EDLMNFFPL_ 0 0 0 REV__ENSG00000105229|ENST00000262971|PIAS4 REV__ENSG00000105229|ENST00000262971|PIAS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8478698730469 3 375.847687 1124.52123 0.35438 0.00013319 -1.064 -0.0003999 -0.70962 -0.00026671 375.84716425626056 25.576 0.32356 22.693 22.498 22.822 -2.8831 41 17 3 0 0 0 0.49272 1 13971 13971 4.897 2.1618 1 8990400 + 7824 18409 5263 5385 9183 9183 -0.03604725385594065 EDLNFPFLPEE 11 Unmodified _EDLNFPFLPEE_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MSMS AL20221201_MKP_PDAC_01 4 450.5491943359375 3 450.546842 1348.6187 NaN NaN NaN NaN NaN NaN NaN 18.584 1 15.963 15.463 16.463 -2.6215 0 0 0 0.94032 1 9799 9799 2.084 0.15646 1 + 7825 17566 5264 5386 9184 9184 -0.041666649757644336 EDLSLAQYL 9 Unmodified _EDLSLAQYL_ 0 0 0 nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 MSMS AL20221201_MKP_PDAC_01 4 526.270263671875 2 526.268947 1050.52334 NaN NaN NaN NaN NaN NaN NaN 81.139 1 74.963 74.463 75.463 -6.1757 0 0 0 0.080768 1 53247 53247 48.346 2.3249 1 7826 16469 5265 5387 9185 9185 0.00010026623863268469 EDLYMHYWF 9 Unmodified _EDLYMHYWF_ 0 0 0 REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9 REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.2766723632812 2 652.276249 1302.53795 NaN NaN NaN NaN NaN NaN NaN 21.32 1 21.32 20.82 21.82 0 0 0 0 0.85737 1 10778 10778 0.6015 0.076735 1 + 7827 21884 5266 5388 9186 9186 -0.10122224499650656 EDMDLYSINY 10 Unmodified _EDMDLYSINY_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000127663|O94953|KDM4B;ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7684936523438 2 631.765911 1261.51727 -0.21431 -0.00013539 2.0256 0.0012797 1.8113 0.0011443 631.7671396811558 70.15 0.18115 69.671 69.615 69.797 -0.47903 16 9 2 0 0 0 0.71123 1 38339 38339 1.6526 0.17072 1 1414100 7828 929;4024;10796;9466 5267 5389 9187 9187 -0.10302859669968711 EDMGLFEAF 9 Unmodified _EDMGLFEAF_ 0 0 0 PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant;ENSG00000172572|ENST00000359062|PDE3A;ENST00000544307.1_1_12:20725060-20833202:+|nuORF PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.4874572753906 3 353.488159 1057.44265 0.20863 7.375E-05 -2.7382 -0.00096791 -2.5295 -0.00089416 353.4874877254334 58.245 0.38291 58.245 58.058 58.441 0 26 14 3 0 0 0 0.52844 1 32426 32426 5.7319 2.1354 1 1000200 7829 8233 5268 5390 9188 9188 -0.0837757769070322 EDNEDDDENR 10 Unmodified _EDNEDDDENR_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.7094421386719 3 417.48497 1249.43308 -0.16243 -6.7811E-05 -0.12376 -5.1667E-05 -0.28618 -0.00011948 417.4847766681366 22.1 0.17524 22.123 22.029 22.204 0.022896 11 7 2 0 0 0 0.24008 1 11230 11230 0.62683 0.41997 1 517340 7830 3129 5269 5391 9189 9189 -0.18165719233184063 EDPFEVWLP 9 Unmodified _EDPFEVWLP_ 0 0 0 REV__ENSG00000214013|ENST00000318010|GANC REV__ENSG00000214013|ENST00000318010|GANC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.888916015625 3 377.850085 1130.52843 -0.013664 -5.1628E-06 0.35919 0.00013572 0.34552 0.00013056 377.85018955932827 38.999 0.25167 38.713 38.585 38.836 -0.28687 18 10 2 0 0 0 0.21834 1 20513 20513 0.96228 0 1 4802000 + 7831 24303 5270 5392 9190 9190 -0.0316166951354262 EDPFEYVF 8 Unmodified _EDPFEYVF_ 0 0 0 nc|ENSG00000293135|Q8WWF6|DNAJB3 nc|ENSG00000293135|Q8WWF6|DNAJB3 nc|ENSG00000293135|Q8WWF6|DNAJB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2291870117188 2 523.22929 1044.44403 -0.87556 -0.00045812 -0.37111 -0.00019418 -1.2467 -0.0006523 523.229522199758 32.494 0.30241 32.494 32.393 32.695 0 48 18 3 0 0 0 0.5953 1 16960 16960 26.341 4.5946 1 11997000 7832 16651 5271 5393 9191 9191 -0.07641620330286969 EDPKHPGWPR 10 Unmodified _EDPKHPGWPR_ 0 0 0 ENST00000474436.1_1_9:35089091-35089349:-|nuORF ENST00000474436.1_1_9:35089091-35089349:-|nuORF ENST00000474436.1_1_9:35089091-35089349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8037719726562 2 609.804354 1217.59415 -0.47503 -0.00028968 -0.8955 -0.00054608 -1.3705 -0.00083576 609.8039503107138 26.075 0.26674 26.075 25.904 26.17 0 30 13 3 0 0 0 0.6785 1 13352 13352 5.2969 2.0156 1 2788200 7833 13937 5272 5394 9192 9192 -0.0059383554796568205 EDPLQLQFA 9 Unmodified _EDPLQLQFA_ 0 0 0 REV__ENST00000314728.9_1_17:19237570-19238089:+|nuORF REV__ENST00000314728.9_1_17:19237570-19238089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2736206054688 2 530.769114 1059.52368 0.33967 0.00018029 -0.050327 -2.6712E-05 0.28934 0.00015357 530.7691588265163 48.119 0.92764 48.119 47.767 48.695 0 118 34 4 0 0 0 0.10734 1 26251 26251 32.305 8.2849 1 944940000 + 7834 25449 5273 5395 9193 9193 -0.0037055365628475556 EDPSLPGH 8 Unmodified _EDPSLPGH_ 0 0 0 ENSG00000105428|ENST00000222033|ZNRF4 ENSG00000105428|ENST00000222033|ZNRF4 ENSG00000105428|ENST00000222033|ZNRF4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.7747192382812 2 426.198325 850.382096 -0.53368 -0.00022745 0.51916 0.00022127 -0.01452 -6.1883E-06 426.1986114538688 34.86 0.26437 34.86 34.733 34.998 0 20 13 2 0 0 0 8.7369 1 18432 18432 5.2307 0 1 2166700 7835 2320 5274 5396 9194 9194 -0.049079269587537055 EDPSLTALRM 10 Unmodified _EDPSLTALRM_ 0 0 0 ENSG00000099260|ENST00000263174|PALMD;nc|ENSG00000099260|Q9NP74-2|PALMD;nc|ENSG00000099260|Q9NP74-3|PALMD ENSG00000099260|ENST00000263174|PALMD ENSG00000099260|ENST00000263174|PALMD MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7817993164062 2 566.786981 1131.55941 1.41 0.00079916 -0.26885 -0.00015238 1.1411 0.00064678 566.7868394598414 96.358 0.90768 90.182 89.767 90.674 -6.1757 95 54 2 0 0 0 0.59286 1 63576 63576 13.042 0 1 41028000 7836 1690 5275 5397 9195 9195 -0.0011083947094903124 EDQGVHPQAAL 11 Unmodified _EDQGVHPQAAL_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2;nc|ENSG00000197410|Q6V1P9-5|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7853393554688 2 582.785827 1163.5571 NaN NaN NaN NaN NaN NaN NaN 71.878 1 71.401 70.901 71.901 -0.47609 0 0 0 0.93613 1 39336 39336 5.2969 0.066215 1 7837 9951 5276 5398 9196 9196 -0.018135518843791942 EDQIVIKNSSN 11 Unmodified _EDQIVIKNSSN_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8168334960938 2 623.817324 1245.62009 0.84137 0.00052486 -2.5605 -0.0015973 -1.7191 -0.0010724 623.8164973569452 102.41 0.079994 96.23 96.193 96.273 -6.1757 11 6 2 0 0 0 0.5551 1 68728 68728 13.615 6.5131 1 6380400 + 7838 20685 5277 5399 9197 9197 0.007109691130153806 EDQTEYLEERW 11 Unmodified _EDQTEYLEERW_ 0 0 0 nc|ENSG00000282100|Q58FF6|HSP90AB4P nc|ENSG00000282100|Q58FF6|HSP90AB4P nc|ENSG00000282100|Q58FF6|HSP90AB4P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 749.328857421875 2 749.328253 1496.64195 0.56845 0.00042596 -0.30196 -0.00022627 0.26649 0.00019969 749.3291361382123 49.739 0.25242 49.346 49.178 49.431 -0.3923 31 12 3 0 0 0 0.69316 1 26739 26739 4.897 1.9018 1 2715500 7839 16612 5278 5400 9198 9198 -0.08650270929115322 EDRDQWPF 8 Unmodified _EDRDQWPF_ 0 0 0 REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF REV__ENST00000489593.1_1_9:134321978-134323403:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3095092773438 2 546.740888 1091.46722 -0.59266 -0.00032403 0.16643 9.0996E-05 -0.42622 -0.00023303 547.2416446210557 101.26 0.082092 101.22 101.16 101.24 -0.042152 4 2 2 0 0 0 8.7369 1 56238 56238 2.3027 0.4585 1 1040500 + 7840 27864 5279 5401 9199 9199 -0.07485181492961601 EDRNFYIT 8 Unmodified _EDRNFYIT_ 0 0 0 ENSG00000182168|ENST00000453304|UNC5C;nc|ENSG00000182168|O95185-2|UNC5C ENSG00000182168|ENST00000453304|UNC5C ENSG00000182168|ENST00000453304|UNC5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2503051757812 2 529.251089 1056.48762 NaN NaN NaN NaN NaN NaN NaN 31.628 1 31.658 31.158 32.158 0.030106 0 0 0 0.97444 1 16580 16580 0.69038 0 1 7841 9025 5280 5402 9200 9200 -0.03836010833151704 EDRTDDFWCHM 11 Unmodified _EDRTDDFWCHM_ 0 0 0 nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1 nc|ENSG00000011258|Q05BQ5-3|MBTD1 nc|ENSG00000011258|Q05BQ5-3|MBTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.5184936523438 3 485.520305 1453.53908 0.25755 0.00012504 -3.1198 -0.0015147 -2.8622 -0.0013897 485.8530935927441 78.575 0.26599 78.575 78.413 78.679 0 21 12 2 0 0 0 0.74157 1 43622 43622 0.094841 0 1 674120 7842 439 5281 5403 9201 9201 -0.16954378193054254 EDSDNDDDTHV 11 Unmodified _EDSDNDDDTHV_ 0 0 0 ENSG00000133124|ENST00000372129|IRS4;nc|ENSG00000133124|O14654|IRS4 ENSG00000133124|ENST00000372129|IRS4 ENSG00000133124|ENST00000372129|IRS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1517028808594 3 421.153221 1260.43783 0.3196 0.0001346 -2.736 -0.0011523 -2.4164 -0.0010177 421.4866681116419 57.613 0.37762 57.613 57.467 57.845 0 31 18 2 0 0 0 0.7187 1 32062 32062 1.0136 0.31591 1 6232100 7843 4493 5282 5404 9202 9202 -0.18196835090429886 EDSEDESDEFF 11 Unmodified _EDSEDESDEFF_ 0 0 0 REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF REV__ENST00000472077.1_1_2:27604468-27607956:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.7377319335938 2 674.738602 1347.46265 0.43318 0.00029228 0.97676 0.00065905 1.4099 0.00095134 674.7387973984382 89.789 0.1753 89.287 89.149 89.324 -0.50172 10 8 2 0 0 0 0.72952 1 49069 49069 1.4819 1.0236 1 448520 + 7844 18962 5283 5405 9203 9203 -0.19718200007719133 EDSFLQSF 8 Unmodified _EDSFLQSF_ 0 0 0 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1;ENSG00000139597|ENST00000380130|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.4327392578125 1 972.430903 971.423627 -0.11504 -0.00011187 -0.057424 -5.5841E-05 -0.17247 -0.00016771 972.4308490730045 70.642 0.24875 70.642 70.496 70.744 0 25 12 3 0 0 0 0.71527 1 39310 39310 15.847 4.2069 1 1133900 7845 16229 5284 5406 9204 9204 -0.06322790990088833 EDSFRQLAF 9 Unmodified _EDSFRQLAF_ 0 0 0 nc|ENSG00000197177|Q86SQ6-1|ADGRA1 nc|ENSG00000197177|Q86SQ6-1|ADGRA1 nc|ENSG00000197177|Q86SQ6-1|ADGRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.277099609375 2 556.772188 1111.52982 0.31886 0.00017753 2.6603 0.0014812 2.9792 0.0016587 557.2753072851676 71.993 0.48196 71.993 71.776 72.258 0 47 22 3 0 0 0 0.48152 1 40021 40021 8.5933 2.8329 1 2034700 7846 16484 5285 5407 9205 9205 -0.02148035424761474 EDSSLLEVDG 10 Unmodified _EDSSLLEVDG_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-7|CFLAR;nc|ENSG00000003402|O15519-3|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2452392578125 2 532.243126 1062.4717 NaN NaN NaN NaN NaN NaN NaN 19.608 1 19.608 19.108 20.108 0 0 0 0 0.99248 1 9817 9817 1.4819 0 1 7847 270 5286 5408 9206 9206 -0.05703761860695522 EDSSLQGESI 10 Unmodified _EDSSLQGESI_ 0 0 0 REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2709350585938 2 532.740751 1063.46695 0.81484 0.0004341 -3.6015 -0.0019187 -2.7867 -0.0014846 532.7392725310222 36.477 0.19986 36.477 36.388 36.588 0 14 9 2 0 0 0 0.23325 1 19301 19301 3.2813 1.2216 1 3562200 + 7848 21334 5287 5409 9207 9207 -0.06224646003443013 EDSVIVWEE 9 Unmodified _EDSVIVWEE_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2561645507812 2 553.256037 1104.49752 0.44901 0.00024842 0.16979 9.3935E-05 0.6188 0.00034235 553.256317894638 87.73 0.50973 87.73 87.443 87.953 0 39 23 2 0 0 0 0.54444 1 48624 48624 4.756 0.42677 1 1095200 + 7849 20769 5288 5410 9208 9208 -0.05054867618446224 EDSWALLQF 9 Unmodified _EDSWALLQF_ 0 0 0 ENST00000366862.9_1_1:224341006-224345077:+|nuORF ENST00000366862.9_1_1:224341006-224345077:+|nuORF ENST00000366862.9_1_1:224341006-224345077:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7691650390625 2 554.769114 1107.52368 0.48145 0.0002671 1.6944 0.00093998 2.1758 0.0012071 554.7701192682074 81.635 0.31042 81.635 81.491 81.801 0 35 16 3 0 0 0 0.55144 1 45370 45370 4.3292 2.0265 1 1129300 7850 12213 5289 5411 9209 9209 -0.02578553656303484 EDSWALLQF 9 Unmodified _EDSWALLQF_ 0 0 0 ENST00000366862.9_1_1:224341006-224345077:+|nuORF ENST00000366862.9_1_1:224341006-224345077:+|nuORF ENST00000366862.9_1_1:224341006-224345077:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.769775390625 2 554.769114 1107.52368 1.0658 0.0005913 -1.5567 -0.0008636 -0.49084 -0.0002723 554.7689279097939 89.935 1.0285 83.759 83.127 84.156 -6.1757 139 57 4 0 0 0 0.042911 2 59496 59371;59496 48.346 3.9434 1 74262000 7851 12213 5289 5411 9210;9211 9211 -0.02578553656303484 EDTEEHHLR 9 Unmodified _EDTEEHHLR_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000523612.1_1_8:142469282-142469963:+|nuORF;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000491091.1_1_3:122036542-122036854:+|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000122566|P22626|HNRNPA2B1 ENSG00000135486|ENST00000340913|HNRNPA1 MSMS AL20221201_MKP_PDAC_01 4 389.1803588867188 3 389.179265 1164.51596 NaN NaN NaN NaN NaN NaN NaN 11.973 1 9.4907 8.9907 9.9907 -2.482 0 0 0 0.67877 1 6032 6032 14.405 9.1085 1 7852 74;16163 5290 5412 9212 9212 -0.0597131292386166 EDTFLLFWL 9 Unmodified _EDTFLLFWL_ 0 0 0 ENST00000482466.5_1_3:37190494-37216062:-|nuORF ENST00000482466.5_1_3:37190494-37216062:-|nuORF ENST00000482466.5_1_3:37190494-37216062:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2232360839844 3 395.20598 1182.59611 -0.35416 -0.00013997 -0.47802 -0.00018891 -0.83217 -0.00032888 395.20598132055335 36.459 0.43509 36.48 36.184 36.619 0.021545 33 19 3 0 0 0 0.21367 1 19245 19245 1.0715 0 1 4364100 7853 14104 5291 5413 9213 9213 0.01211780417315822 EDVISHKGDL 10 Unmodified _EDVISHKGDL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000151914|Q03001-10|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS AL20221201_MKP_PDAC_01 4 556.7806396484375 2 556.782753 1111.55095 NaN NaN NaN NaN NaN NaN NaN 98.026 1 91.85 91.35 92.35 -6.1757 0 0 0 0.47175 1 64980 64980 27.629 1.3607 1 7854 6155;16276;4022 5292 5414 9214 9214 -0.00036070115902475663 EDVKEGNIIGQ 11 Unmodified _EDVKEGNIIGQ_ 0 0 0 CDH9|p.S400N|1|0.07|ENSG00000113100|chr5:26902530-26902530|C/T|missense_variant CDH9|p.S400N|1|0.07|ENSG00000113100|chr5:26902530-26902530|C/T|missense_variant CDH9|p.S400N|1|0.07|ENSG00000113100|chr5:26902530-26902530|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8098754882812 2 601.306592 1200.59863 0.19621 0.00011798 0.20641 0.00012411 0.40262 0.0002421 601.3067491106023 56.678 0.20144 56.609 56.497 56.699 -0.068737 14 9 2 0 0 0 0.71341 1 30822 30822 2.9952 0 1 4595600 7855 56 5293 5415 9215 9215 0.006355840842843463 EDVMEHRKMK 10 Unmodified _EDVMEHRKMK_ 0 0 0 REV__ENSG00000197013|ENST00000358491|ZNF429 REV__ENSG00000197013|ENST00000358491|ZNF429 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821411132812 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 31.313 1 31.313 30.813 31.813 0 0 0 0 0.99091 1 16305 16305 0.69767 0.07084 1 + 7856 23887 5294 5416 9216 9216 -0.0167201667441077 EDVNHAAI 8 Unmodified _EDVNHAAI_ 0 0 0 ENSG00000204851|ENST00000599531|PNMA8B;nc|ENSG00000204851|Q9ULN7-1|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B MSMS AL20221201_MKP_PDAC_01 4 434.7100524902344 2 434.711599 867.408646 NaN NaN NaN NaN NaN NaN NaN 65.165 1 58.989 58.489 59.489 -6.1757 0 0 0 0.97444 1 42285 42285 5.2307 0 1 7857 10332 5295 5417 9217 9217 -0.030362380674318956 EDYATAHEDF 10 Unmodified _EDYATAHEDF_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1197.813232421875 1 1197.46947 1196.4622 0.99292 0.001189 4.1956 0.0050241 5.1885 0.0062131 1198.47515903482 71.804 0.052269 65.629 65.604 65.656 -6.1757 4 2 2 0 0 0 0.23634 1 46948 46948 6.7232 0.51738 1 22670000 7858 5541 5296 5418 9218 9218 -0.12817530146230638 EDYRLYKCSSF 11 Unmodified _EDYRLYKCSSF_ 0 0 0 REV__ENST00000509787.1_1_5:145882841-145883656:+|nuORF REV__ENST00000509787.1_1_5:145882841-145883656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.3245239257812 2 705.821552 1409.62855 0.37806 0.00026684 -0.89254 -0.00062997 -0.51448 -0.00036313 706.3225355615072 86.717 0.32762 86.213 86.115 86.443 -0.50318 16 12 2 0 0 0 0.71036 1 47470 47470 3.2813 0 1 552850 + 7859 28132 5297 5419 9219 9219 -0.05987800242019148 EDYRTKETF 9 Unmodified _EDYRTKETF_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20221201_MKP_PDAC_01 4 396.854736328125 3 396.855899 1187.54587 NaN NaN NaN NaN NaN NaN NaN 23.539 1 20.712 20.212 21.212 -2.8273 0 0 0 0.83812 1 12746 12746 2.9952 1.253 1 7860 8104 5298 5420 9220 9220 -0.04040373978523348 EDYTIHVQL 9 Unmodified _EDYTIHVQL_ 0 0 0 nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155100369-155106166:+|nuORF nc|ENSG00000169242|P20827-2|EFNA1 nc|ENSG00000169242|P20827-2|EFNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.1892395019531 3 373.188989 1116.54514 NaN NaN NaN NaN NaN NaN NaN 22.237 1 22.237 21.737 22.737 0 0 0 0 0.6306 1 11303 11303 7.609 0 1 7861 7855 5299 5421 9221 9221 -0.00847168627569772 EDYYSYRF 8 Unmodified _EDYYSYRF_ 0 0 0 REV__nc|ENSG00000162959|Q9Y316-2|MEMO1 REV__nc|ENSG00000162959|Q9Y316-2|MEMO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.242919921875 2 571.743096 1141.47164 -0.0085076 -4.8642E-06 1.3336 0.00076245 1.3251 0.00075759 571.7440056214597 71.029 0.31435 71.029 70.873 71.187 0 43 14 4 0 0 0 8.7369 1 39525 39525 5.2307 0.90143 1 5718600 + 7862 21711 5300 5422 9222 9222 -0.09343717070032653 EEAAAAQED 9 Unmodified _EEAAAAQED_ 0 0 0 ENST00000280527.6_1_2:36583212-36583554:+|nuORF ENST00000280527.6_1_2:36583212-36583554:+|nuORF ENST00000280527.6_1_2:36583212-36583554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.1927185058594 2 467.193436 932.37232 0.7549 0.00035269 -0.84126 -0.00039303 -0.086356 -4.0345E-05 467.1929339759259 53.306 0.68751 53.306 52.958 53.645 0 50 31 2 0 0 0 0.5029 1 29691 29691 7.2892 0 1 3105700 7863 11406 5301 5423 9223 9223 -0.09657159754817712 EEADHSRVLF 10 Unmodified _EEADHSRVLF_ 0 0 0 REV__ENST00000502555.5_1_17:48244836-48246708:+|nuORF REV__ENST00000502555.5_1_17:48244836-48246708:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7937622070312 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.54684 1 51417 51417 13.906 5.1606 1 114760000 + 7864 18630 5302 5424 9224 9224 -0.019972653673448804 EEAEEEEGMD 10 Unmodified _EEAEEEEGMD_ 0 0 0 ENST00000301057.7_2_17:27898942-27899002:+|nuORF ENST00000301057.7_2_17:27898942-27899002:+|nuORF ENST00000301057.7_2_17:27898942-27899002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.80322265625 3 389.804653 1166.39213 -0.4854 -0.00018921 -2.0794 -0.00081057 -2.5648 -0.00099978 389.80385498276183 55.256 0.28754 55.256 55.126 55.414 0 22 12 2 0 0 0 0.69377 1 30692 30692 1.7423 0 1 4031600 7865 11564 5303 5425 9225 9225 -0.18441196596995724 EEAISTAVF 9 Unmodified _EEAISTAVF_ 0 0 0 REV__nc|ENSG00000072133|Q9UK32-2|RPS6KA6 REV__nc|ENSG00000072133|Q9UK32-2|RPS6KA6 MSMS AL20221201_MKP_PDAC_01 4 483.7435913085938 2 483.742565 965.470577 NaN NaN NaN NaN NaN NaN NaN 78.384 1 72.209 71.709 72.709 -6.1757 0 0 0 0.46757 1 51305 51305 16.942 0.79319 1 + 7866 17509 5304 5426 9226 9226 -0.013539314389504398 EEAMNTTSL 9 Unmodified _EEAMNTTSL_ 0 0 0 ENSG00000132297|ENST00000414222|HHLA1;nc|ENSG00000132297|C9JL84-2|HHLA1 ENSG00000132297|ENST00000414222|HHLA1 ENSG00000132297|ENST00000414222|HHLA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2221069335938 2 498.221139 994.427726 -0.155 -7.7225E-05 -0.31447 -0.00015668 -0.46947 -0.0002339 498.221060529698 24.291 0.57683 24.291 23.995 24.572 0 80 32 3 0 0 0 0.49272 1 12552 12552 7.9102 0 1 2858300 7867 4385 5305 5427 9227 9227 -0.06971069558687759 EEAPGAWDE 9 Unmodified _EEAPGAWDE_ 0 0 0 ENST00000393094.6_1_11:107879842-107880085:+|nuORF ENST00000393094.6_1_11:107879842-107880085:+|nuORF ENST00000393094.6_1_11:107879842-107880085:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7616882324219 2 502.203804 1002.39306 0.45376 0.00022788 -0.76402 -0.00038369 -0.31026 -0.00015581 502.20379485196554 52.637 0.17722 52.637 52.573 52.75 0 11 7 2 0 0 0 0.209 1 29164 29164 7.2892 0 1 709880 7868 12695 5306 5428 9228 9228 -0.10804569375147821 EEAPLAVQCC 10 Unmodified _EEAPLAVQCC_ 0 0 0 REV__ENST00000502953.1_1_5:54623411-54635894:+|nuORF REV__ENST00000502953.1_1_5:54623411-54635894:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7327880859375 2 531.73336 1061.45217 0.13958 7.422E-05 0.34688 0.00018445 0.48646 0.00025867 531.7332774898553 23.566 0.36591 20.739 20.444 20.809 -2.8273 33 21 2 0 0 0 0.62068 1 12616 12616 10.074 1.4806 1 2723000 + 7869 28033 5307 5429 9229 9229 -0.07610132676813919 EEAQALLFLV 10 Unmodified _EEAQALLFLV_ 0 0 0 ENST00000575734.5_2_17:53800001-53805168:-|nuORF;ENST00000424486.2_2_17:53800001-53800097:-|nuORF;ENST00000575685.1_1_17:53800001-53800347:-|nuORF ENST00000575734.5_2_17:53800001-53805168:-|nuORF ENST00000575734.5_2_17:53800001-53805168:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2130737304688 3 378.213135 1131.61758 NaN NaN NaN NaN NaN NaN NaN 21.888 1 21.902 21.402 22.402 0.013796 0 0 0 0.98914 1 11228 11228 0.77653 0.078866 1 7870 13150 5308 5430 9230 9230 0.05703165445970626 EEAQRRRMDEI 11 Unmodified _EEAQRRRMDEI_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.8521728515625 2 716.851706 1431.68886 -0.0079965 -5.7323E-06 1.0388 0.0007447 1.0308 0.00073897 716.8522832033456 97.048 0.22675 97.048 96.931 97.158 0 24 9 3 0 0 0 0.61059 1 53612 53612 10.8 2.644 1 1778100 7871 1863 5309 5431 9231 9231 -0.009716898589431366 EEASPVVHY 9 Unmodified _EEASPVVHY_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7440185546875 2 515.745639 1029.47673 0.23601 0.00012172 -0.77999 -0.00040228 -0.54398 -0.00028055 515.7445376475323 72.257 0.29202 72.257 72.095 72.387 0 29 12 3 0 0 0 0.54444 1 40217 40217 4.756 0.42677 1 1817600 + 7872 23322 5310 5432 9232 9232 -0.03683413207409103 EECCCCCCCD 10 Unmodified _EECCCCCCCD_ 0 0 0 REV__ENSG00000170075|ENST00000367282|GPR37L1 REV__ENSG00000170075|ENST00000367282|GPR37L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.0984497070312 2 557.100769 1112.18699 NaN NaN NaN NaN NaN NaN NaN 102.21 1 102.09 101.59 102.59 -0.11613 0 0 0 1.0061 1 55767 55767 0 0 1 + 7873 22444 5311 5433 9233 9233 -0.36462075791769166 EECDCGTPKEC 11 Unmodified _EECDCGTPKEC_ 0 0 0 nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2109985351562 2 607.212131 1212.40971 NaN NaN NaN NaN NaN NaN NaN 4.082 1 4.0757 3.5757 4.5757 -0.0062971 0 0 0 0.94307 1 2069 2069 0.30703 0.30703 1 7874 7785 5312 5434 9234 9234 -0.18799895867346095 EECLKRRWDLL 11 Unmodified _EECLKRRWDLL_ 0 0 0 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2620544433594 3 487.594133 1459.76057 0.44563 0.00021728 2.6145 0.0012748 3.0601 0.0014921 487.5956901949434 59.242 0.10719 58.751 58.707 58.814 -0.49079 6 4 2 0 0 0 0.30565 1 32238 32238 2.2527 0.16876 1 580260 + 7875 17198 5313 5435 9235 9235 0.049078495655749066 EECLKRRWDLL 11 Unmodified _EECLKRRWDLL_ 0 0 0 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 487.594133 1459.76057 0.7155 0.00034887 2.1687 0.0010574 2.8842 0.0014063 487.5953241223867 58.871 0.18082 58.81 58.7 58.88 -0.060719 0.029748 -0.00019015 NaN 2.2527 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1275600 + 7876 17198 5313 5435 0.049078495655749066 EECSTLFGEY 10 Unmodified _EECSTLFGEY_ 0 0 0 nc|ENSG00000163743|Q96PM5-8|RCHY1;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-2|RCHY1;ENSG00000163743|ENST00000324439|RCHY1;ENST00000514589.5_1_4:76416932-76439505:-|nuORF;nc|ENSG00000163743|Q96PM5-3|RCHY1;nc|ENSG00000163743|Q96PM5-4|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1 nc|ENSG00000163743|Q96PM5-8|RCHY1 nc|ENSG00000163743|Q96PM5-8|RCHY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.239013671875 2 589.239529 1176.46451 0.40038 0.00023592 -0.97852 -0.00057658 -0.57814 -0.00034067 589.2391805671004 38.93 0.22441 38.93 38.811 39.036 0 16 9 2 0 0 0 0.69064 1 20829 20829 3.9444 0.3479 1 3140500 7877 7061 5314 5436 9236 9236 -0.11666817732771051 EEDDADEEAP 10 Unmodified _EEDDADEEAP_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000487486.5_1_22:30185004-30189497:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.201416015625 2 560.201655 1118.38876 -0.26989 -0.00015119 -1.3765 -0.00077114 -1.6464 -0.00092233 560.2007807239347 34.849 0.82124 34.849 34.308 35.129 0 142 42 4 0 0 0 0.69377 1 18546 18546 3.5965 0 1 15960000 7878 1795 5315 5437 9237 9237 -0.16570123379392498 EEDDEEDEY 9 Unmodified _EEDDEEDEY_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.6912231445312 2 586.69112 1171.36769 1.0634 0.00062389 -0.75245 -0.00044145 0.31096 0.00018244 586.6905930945757 55.173 0.56857 49.252 48.956 49.525 -5.9211 92 35 4 0 0 0 0.54444 1 35112 35112 4.756 2.6963 1 63075000 + 7879 21733 5316 5438 9238 9238 -0.21114133478886288 EEDDMAFF 8 Unmodified _EEDDMAFF_ 0 0 0 nc|ENSG00000188732|A4D161-3|FAM221A;nc|ENSG00000188732|A4D161-2|FAM221A;ENSG00000188732|ENST00000344962|FAM221A nc|ENSG00000188732|A4D161-3|FAM221A nc|ENSG00000188732|A4D161-3|FAM221A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.1893615722656 2 502.189308 1002.36406 0.60427 0.00030346 -0.47106 -0.00023656 0.13322 6.6899E-05 502.1890752836921 58.047 0.83555 58.047 57.699 58.535 0 153 34 6 0 0 0 0.80676 1 32377 32377 2.5775 0 1 14095000 7880 9688 5317 5439 9239 9239 -0.1370242999578295 EEDDYPSEEL 10 Unmodified _EEDDYPSEEL_ 0 0 0 nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF nc|ENSG00000154305|Q5JRA6-2|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2417602539062 2 613.24078 1224.46701 0.44448 0.00027257 0.46297 0.00028391 0.90745 0.00055648 613.241301450791 56.902 0.40947 56.902 56.746 57.156 0 73 17 7 0 0 0 0.6606 1 31720 31720 7.2892 1.0834 1 66673000 7881 6317 5318 5440 9240 9240 -0.1362469079413131 EEDEDTEWD 9 Unmodified _EEDEDTEWD_ 0 0 0 REV__ENSG00000234127|ENST00000454678|TRIM26 REV__ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2056884765625 2 584.201655 1166.38876 -0.38565 -0.0002253 -1.0693 -0.00062471 -1.455 -0.00085001 584.201167429875 55.273 0.49321 55.273 54.968 55.461 0 97 21 7 0 0 0 0.59218 1 30646 30646 1.8442 0 1 27916000 + 7882 24415 5319 5441 9241 9241 -0.1877812337938849 EEDEEEDSCI 10 Unmodified _EEDEEEDSCI_ 0 0 0 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 REV__nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2090454101562 2 599.208623 1196.40269 0.59445 0.0003562 -0.22967 -0.00013762 0.36478 0.00021858 599.2085801676011 51.266 0.28141 51.266 51.15 51.431 0 33 12 4 0 0 0 0.71123 1 28308 28308 1.6526 1.0511 1 5317700 + 7883 19172 5320 5442 9242 9242 -0.18765213942560877 EEDEEWEDI 9 Unmodified _EEDEEWEDI_ 0 0 0 ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|179|57.35|0.0|22.45|+|ENST00000643617|CCDC9,CCDC9 ENSG00000105321|ENST00000221922|CCDC9 ENSG00000105321|ENST00000221922|CCDC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2284545898438 2 597.227673 1192.44079 0.041123 2.456E-05 0.67646 0.000404 0.71759 0.00042856 597.2283702424348 69.563 0.40755 69.563 69.326 69.734 0 50 18 4 0 0 0 0.58466 1 38814 38814 2.3027 0.24298 1 2641500 7884 98 5321 5443 9243 9243 -0.1477295996560315 EEDEKPPF 8 Unmodified _EEDEKPPF_ 0 0 0 REV__ENSG00000102221|ENST00000614628|JADE3 REV__ENSG00000102221|ENST00000614628|JADE3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.723876953125 2 495.724372 989.434192 NaN NaN NaN NaN NaN NaN NaN 69.937 1 69.937 69.437 70.437 0 0 0 0 0.97348 1 38963 38963 5.7604 1.0044 1 + 7885 18227 5322 5444 9244 9244 -0.06094808335660673 EEDFLVEF 8 Unmodified _EEDFLVEF_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2368774414062 2 514.234573 1026.45459 0.27405 0.00014092 3.2093 0.0016504 3.4834 0.0017913 514.737554627057 50.309 0.29319 50.309 50.096 50.389 0 21 13 2 0 0 0 0.74163 1 27720 27720 13.508 1.8676 1 2131900 + 7886 18904 5323 5445 9245 9245 -0.05757637675856131 EEDFLVEF 8 Unmodified _EEDFLVEF_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.234573 1026.45459 0.27405 0.00014092 3.2093 0.0016504 3.4834 0.0017913 514.737554627057 50.309 0.29319 50.309 50.096 50.389 0 -0.01339 -0.00088546 NaN 13.508 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2131900 + 7887 18904 5323 5445 -0.05757637675856131 EEDFLVEF 8 Unmodified _EEDFLVEF_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.234573 1026.45459 0.64504 0.0003317 5.0575 0.0026008 5.7026 0.0029325 514.2373814495453 50.751 0.2235 50.337 50.214 50.438 -0.41351 0.01508 0.0010154 NaN 13.508 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1207400 + 7888 18904 5323 5445 -0.05757637675856131 EEDFLVEF 8 Unmodified _EEDFLVEF_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.234573 1026.45459 1.4632 0.00075243 3.8086 0.0019585 5.2718 0.002711 514.2363202135664 50.369 0.24241 50.321 50.191 50.433 -0.048824 -0.0016899 -0.00026913 NaN 13.508 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1554900 + 7889 18904 5323 5445 -0.05757637675856131 EEDKLAWI 8 Unmodified _EEDKLAWI_ 0 0 0 REV__ENST00000391998.3_1_19:53982744-53982942:+|nuORF REV__ENST00000391998.3_1_19:53982744-53982942:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2583312988281 2 502.258382 1002.50221 NaN NaN NaN NaN NaN NaN NaN 74.725 1 74.725 74.225 75.225 0 0 0 0 0.97444 1 41577 41577 0.79363 0 1 + 7890 26380 5324 5446 9246 9246 0.0010606131498889226 EEDNLYELI 9 Unmodified _EEDNLYELI_ 0 0 0 REV__ENST00000519338.1_1_8:82614932-82615299:-|nuORF REV__ENST00000519338.1_1_8:82614932-82615299:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2704467773438 2 569.269144 1136.52373 NaN NaN NaN NaN NaN NaN NaN 14.607 1 14.614 14.114 15.114 0.0073986 0 0 0 0.85852 1 7247 7247 0.45834 0 1 + 7891 18345 5325 5447 9247 9247 -0.039065984469289106 EEDSYDSF 8 Unmodified _EEDSYDSF_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;ENSG00000143801|ENST00000366783|PSEN2 nc|ENSG00000288674|P49810-2|PSEN2 nc|ENSG00000288674|P49810-2|PSEN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.1808166503906 2 496.179995 990.345436 NaN NaN NaN NaN NaN NaN NaN 56.388 1 56.388 55.888 56.888 0 0 0 0 0.95607 1 31362 31362 9.3474 6.4582 1 7892 5554 5326 5448 9248 9248 -0.15012268365990167 EEDTKILVTG 10 Unmodified _EEDTKILVTG_ 0 0 0 REV__ENST00000413611.2_1_1:146675680-146675794:-|nuORF REV__ENST00000413611.2_1_1:146675680-146675794:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2896728515625 2 552.792786 1103.57102 1.0411 0.00057549 -2.3797 -0.0013155 -1.3386 -0.00073999 552.7952545280042 54.435 0.63281 48.57 48.266 48.899 -5.8653 129 38 5 0 0 0 0.52097 1 34590 34590 15.248 1.3424 1 167170000 + 7893 26734 5327 5449 9249 9249 0.02337680824052768 EEDVRENVVTY 11 Unmodified _EEDVRENVVTY_ 0 0 0 ENSG00000145526|ENST00000382275|CDH18 ENSG00000145526|ENST00000382275|CDH18 ENSG00000145526|ENST00000382275|CDH18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.8853149414062 3 451.549135 1351.62557 -0.43835 -0.00019794 1.5089 0.00068134 1.0705 0.0004834 451.88408136637184 28.336 0.29395 28.336 28.074 28.368 0 29 14 4 0 0 0 0.69509 1 14615 14615 4.7159 0.83959 1 2572500 7894 5703 5328 5450 9250 9250 -0.036173520951933824 EEEAIIMKD 9 Unmodified _EEEAIIMKD_ 0 0 0 ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF ENSG00000186010|ENST00000507754|NDUFA13 ENSG00000186010|ENST00000507754|NDUFA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2593383789062 2 539.260265 1076.50598 0.50595 0.00027284 0.73212 0.0003948 1.2381 0.00066764 539.2604339888696 72.993 0.26611 72.993 72.762 73.028 0 19 12 2 0 0 0 0.5029 1 40597 40597 7.2892 1.5288 1 899690 7895 9441 5329 5451 9251 9251 -0.029216369734513137 EEECGILIDNP 11 Unmodified _EEECGILIDNP_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.279052734375 2 616.279186 1230.54382 0.65643 0.00040454 -0.077254 -4.761E-05 0.57918 0.00035693 616.2794258377497 83.419 0.35651 82.921 82.719 83.075 -0.49751 42 14 4 0 0 0 0.56638 1 45716 45716 13.042 2.9685 1 3509700 + 7896 19024 5330 5452 9252 9252 -0.062231707786168045 EEECGILIDNP 11 Unmodified _EEECGILIDNP_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 616.279186 1230.54382 0.65643 0.00040454 -0.077254 -4.761E-05 0.57918 0.00035693 616.2794258377497 83.419 0.35651 82.921 82.719 83.075 -0.49751 0.030701 -0.00022743 NaN 13.042 42 14 4 NaN NaN NaN NaN 0 NaN NaN 0 3509700 + 7897 19024 5330 5452 -0.062231707786168045 EEECGILIDNP 11 Unmodified _EEECGILIDNP_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 616.279186 1230.54382 1.1633 0.00071692 2.8213 0.0017387 3.9846 0.0024556 616.281295103126 82.798 0.25337 82.86 82.664 82.917 0.062004 -0.030701 0.0033452 NaN 13.042 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1756600 + 7898 19024 5330 5452 -0.062231707786168045 EEEDDNPDWV 10 Unmodified _EEEDDNPDWV_ 0 0 0 nc|ENSG00000136098|P51956-2|NEK3;ENSG00000136098|ENST00000610828|NEK3;ENST00000550331.1_1_13:52707280-52707970:-|nuORF nc|ENSG00000136098|P51956-2|NEK3 nc|ENSG00000136098|P51956-2|NEK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.23828125 2 624.238572 1246.46259 NaN NaN NaN NaN NaN NaN NaN 6.2228 1 6.1381 5.6381 6.6381 -0.08463 0 0 0 1.0061 1 3072 3072 0 0 1 7899 4785 5331 5453 9253 9253 -0.15078155217065614 EEEDFEEQTL 10 Unmodified _EEEDFEEQTL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5112609863281 3 423.510345 1267.50921 -0.31017 -0.00013136 1.2431 0.00052647 0.93296 0.00039512 423.5109462617868 56.263 0.19073 56.194 56.075 56.266 -0.068741 12 9 2 0 0 0 0.71123 1 30564 30564 0.69767 0.19171 1 2707200 7900 7163;16335 5332 5454 9254 9254 -0.11384715385770505 EEEDRHDGF 9 Unmodified _EEEDRHDGF_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2294921875 2 567.228342 1132.44213 NaN NaN NaN NaN NaN NaN NaN 60.077 1 60.077 59.577 60.577 0 0 0 0 0.82739 1 33497 33497 4.3292 0 1 + 7901 18888 5333 5455 9255 9255 -0.11879281086203264 EEEECFEAL 9 Unmodified _EEEECFEAL_ 0 0 0 REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8150329589844 3 366.814712 1097.42231 0.073617 2.7004E-05 -2.0777 -0.00076215 -2.0041 -0.00073514 366.8147197170382 81.884 0.36245 81.884 81.694 82.057 0 56 20 4 0 0 0 0.60485 1 45415 45415 1.0715 0.61312 1 1538600 + 7902 17287 5334 5456 9256 9256 -0.12250793141174654 EEEECFEAL 9 Unmodified _EEEECFEAL_ 0 0 0 REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 366.814712 1097.42231 0.073617 2.7004E-05 -2.0777 -0.00076215 -2.0041 -0.00073514 366.8147197170382 81.884 0.36245 81.884 81.694 82.057 0 0.0070218 -0.0010784 NaN 1.0715 56 20 4 NaN NaN NaN NaN 0 NaN NaN 0 1538600 + 7903 17287 5334 5456 -0.12250793141174654 EEEECFEAL 9 Unmodified _EEEECFEAL_ 0 0 0 REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF REV__ENST00000518735.1_1_5:153405944-153406840:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.814712 1097.42231 0.60924 0.00022348 -0.34219 -0.00012552 0.26705 9.7957E-05 366.81455381609504 82.365 0.2682 81.87 81.742 82.01 -0.4952 -0.0070218 0.00083149 NaN 1.0715 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 307230 + 7904 17287 5334 5456 -0.12250793141174654 EEEEDYTHEPI 11 Unmodified _EEEEDYTHEPI_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.5267639160156 3 464.193016 1389.55722 -0.043497 -2.0191E-05 -1.6482 -0.00076507 -1.6917 -0.00078526 464.5264670116922 37.481 0.17646 37.5 37.418 37.594 0.019119 13 8 2 0 0 0 0.71728 1 19921 19921 2.6312 1.9336 1 2460100 7905 5064 5335 5457 9257 9257 -0.12197641465718334 EEEEEDDDY 9 Unmodified _EEEEEDDDY_ 0 0 0 nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;nc|ENSG00000187912|Q6ZS10-2|CLEC17A;nc|ENSG00000187912|Q6ZS10-3|CLEC17A;nc|ENSG00000100722|Q6PJT7-10|ZC3H14;nc|ENSG00000100722|Q6PJT7-4|ZC3H14;nc|ENSG00000100722|Q6PJT7-3|ZC3H14;nc|ENSG00000100722|Q6PJT7-11|ZC3H14;ENSG00000187912|ENST00000417570|CLEC17A nc|ENSG00000100722|Q6PJT7-5|ZC3H14;ENSG00000187912|ENST00000417570|CLEC17A nc|ENSG00000100722|Q6PJT7-5|ZC3H14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.6908569335938 2 586.69112 1171.36769 0.1523 8.9355E-05 -0.90148 -0.00052889 -0.74918 -0.00043954 586.6906679590734 48.095 0.54261 48.095 47.831 48.373 0 115 26 7 0 0 0 0.61256 1 26497 26497 0.6015 0 1 40732000 7906 1867;9608 5336 5458 9258 9258 -0.21114133478886288 EEEEEDYF 8 Unmodified _EEEEEDYF_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;ENST00000433596.1_1_2:43908485-43908692:-|nuORF nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7513427734375 2 545.198384 1088.38222 0.22073 0.00012034 -0.074598 -4.0671E-05 0.14613 7.967E-05 545.1982694715497 76.715 0.35922 76.715 76.514 76.874 0 26 14 2 0 0 0 8.7369 1 42551 42551 0.79363 0 1 3490400 7907 2169 5337 5459 9259 9259 -0.1584401654008616 EEEEEDYF 8 Unmodified _EEEEEDYF_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;ENST00000433596.1_1_2:43908485-43908692:-|nuORF nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.198486328125 2 545.198384 1088.38222 -0.64099 -0.00034947 0.17287 9.4247E-05 -0.46812 -0.00025522 545.198626247638 77.198 0.39806 76.715 76.517 76.915 -0.4826 65 17 6 0 0 0 0.80975 1 42344 42344 0.79363 0 1 4941000 7908 2169 5337 5459 9260 9260 -0.1584401654008616 EEEEEEDSL 9 Unmodified _EEEEEEDSL_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2523803710938 2 554.711856 1107.40916 1.2125 0.00067259 -0.5153 -0.00028584 0.69721 0.00038675 554.7113063845069 79.685 0.32446 79.196 79.008 79.333 -0.48932 24 14 2 0 0 0 0.21367 1 43590 43590 4.756 0 1 1731300 + 7909 22602 5338 5460 9261 9261 -0.14024952719569228 EEEEEFREY 9 Unmodified _EEEEEFREY_ 0 0 0 ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2 ENSG00000136478|ENST00000584379|TEX2 ENSG00000136478|ENST00000584379|TEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.2577514648438 2 630.256765 1258.49898 0.07532 4.7471E-05 0.91475 0.00057653 0.99007 0.000624 630.2575001575486 65.412 0.40691 65.412 65.143 65.55 0 37 15 3 0 0 0 0.55144 1 36520 36520 4.3292 0.38484 1 1322800 7910 4824 5339 5461 9262 9262 -0.11993278320301215 EEEEGPKDKQK 11 Unmodified _EEEEGPKDKQK_ 0 0 0 REV__ENSG00000121297|ENST00000240587|TSHZ3 REV__ENSG00000121297|ENST00000240587|TSHZ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.82080078125 2 658.820064 1315.62557 0.49502 0.00032613 -0.69112 -0.00045533 -0.1961 -0.0001292 658.8196761454958 36.555 0.28031 36.555 36.409 36.69 0 42 13 4 0 0 0 0.59689 1 19363 19363 11.495 3.3392 1 22301000 + 7911 19286 5340 5462 9263 9263 -0.01961352095190705 EEEEKDREI 9 Unmodified _EEEEKDREI_ 0 0 0 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8182983398438 2 588.772582 1175.53061 -0.86175 -0.00050738 -3.3104 -0.001949 -4.1721 -0.0024564 588.7707881668584 32.125 0.16097 32.125 32.023 32.184 0 12 7 2 0 0 0 0.1474 1 16793 16793 28.487 10.352 1 835800 7912 2033 5341 5463 9264 9264 -0.05013285566360537 EEEEYDEP 8 Unmodified _EEEEYDEP_ 0 0 0 REV__ENST00000464761.1_1_2:204276063-204301494:+|nuORF REV__ENST00000464761.1_1_2:204276063-204301494:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.7611694335938 2 520.190559 1038.36657 1.0955 0.00056986 -0.63806 -0.00033191 0.45742 0.00023794 520.1901690426323 83.637 0.37685 77.462 77.323 77.7 -6.1757 36 19 2 0 0 0 8.7369 1 55124 55124 0.69038 0.69038 1 11323000 + 7913 20335 5342 5464 9265 9265 -0.15108303057149897 EEEGDNEECE 10 Unmodified _EEEGDNEECE_ 0 0 0 REV__nc|ENSG00000150867|P48426-2|PIP4K2A REV__nc|ENSG00000150867|P48426-2|PIP4K2A MSMS AL20221201_MKP_PDAC_01 4 394.7962951660156 3 394.796157 1181.36664 NaN NaN NaN NaN NaN NaN NaN 4.6141 1 2.1322 1.6322 2.6322 -2.482 0 0 0 1.0061 1 2343 2343 0 0 1 + 7914 21040 5343 5465 9266 9266 -0.21678671119411774 EEEHHKKL 8 Unmodified _EEEHHKKL_ 0 0 0 REV__ENST00000497986.5_1_1:28562878-28564486:+|nuORF REV__ENST00000497986.5_1_1:28562878-28564486:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2711181640625 2 525.272355 1048.53016 NaN NaN NaN NaN NaN NaN NaN 94.553 1 94.133 93.633 94.633 -0.42044 0 0 0 0.97444 1 51657 51657 0.69038 0 1 + 7915 19742 5344 5466 9267 9267 0.00783384295095857 EEEIYWGCFY 10 Unmodified _EEEIYWGCFY_ 0 0 0 ENSG00000187186|ENST00000421828|unknown ENSG00000187186|ENST00000421828|unknown ENSG00000187186|ENST00000421828|unknown MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 669.7703247070312 2 669.770997 1337.52744 -0.44451 -0.00029772 -0.085877 -5.7518E-05 -0.53039 -0.00035524 669.7713672132799 23.886 0.34367 23.886 23.714 24.058 0 27 16 2 0 0 0 0.71123 1 12163 12163 1.6526 0 1 628640 7916 9543 5345 5467 9268 9268 -0.12782251944713607 EEEKEKMEQQF 11 Unmodified _EEEKEKMEQQF_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 727.8262939453125 2 727.827031 1453.63951 -0.069169 -5.0343E-05 -1.9023 -0.0013846 -1.9715 -0.0014349 727.825781494828 51.719 0.30538 51.719 51.603 51.908 0 22 13 2 0 0 0 0.6889 1 28582 28582 5.2969 0.39987 1 8265600 + 7917 24466 5346 5468 9269 9269 -0.069164426584166 EEEKQRNTSW 10 Unmodified _EEEKQRNTSW_ 0 0 0 ENST00000538077.2_1_13:111521866-111521998:-|nuORF ENST00000538077.2_1_13:111521866-111521998:-|nuORF ENST00000538077.2_1_13:111521866-111521998:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.8038330078125 2 653.804748 1305.59494 0.68082 0.00044513 1.3554 0.00088614 2.0362 0.0013313 654.3072161140724 50.762 0.46551 50.349 50.092 50.557 -0.41351 77 22 5 0 0 0 0.56348 1 27369 27369 13.042 4.2971 1 7753400 7918 15003 5347 5469 9270 9270 -0.04563085689574109 EEEKYVREL 9 Unmodified _EEEKYVREL_ 0 0 0 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8031616210938 2 597.803685 1193.59282 0.17985 0.00010752 -0.53473 -0.00031966 -0.35488 -0.00021215 597.8032627176664 67.76 0.27517 67.76 67.621 67.896 0 30 12 3 0 0 0 0.10734 2 37748 37748;37847 32.305 7.3145 1 2436400 7919 3850 5348 5470 9271;9272 9271 0.0037648557263310067 EEELEIELM 9 Unmodified _EEELEIELM_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.765380859375 2 567.76538 1133.51621 -0.3101 -0.00017606 0.1317 7.4773E-05 -0.1784 -0.00010129 567.7656604441481 29.822 0.38536 29.822 29.608 29.994 0 58 21 4 0 0 0 0.54444 1 15550 15550 4.756 0 1 28197000 7920 9827 5349 5471 9273 9273 -0.045210740388938575 EEELTFWGI 9 Unmodified _EEELTFWGI_ 0 0 0 nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;KCNC4|p.T559Lfs*39|1|0.2|ENSG00000116396|chr1:110226026-110226042|CTGGCCTCACCCAACCC/-|frameshift_variant;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4 nc|ENSG00000116396|Q03721-2|KCNC4 nc|ENSG00000116396|Q03721-2|KCNC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.1806945800781 3 375.181723 1122.52334 0.057168 2.1448E-05 -0.10492 -3.9364E-05 -0.047751 -1.7915E-05 375.1815678792388 63.065 0.35163 63.065 62.92 63.272 0 29 14 3 0 0 0 0.58466 1 35254 35254 1.1933 0.12188 1 3489500 7921 3217 5350 5472 9274 9274 -0.033019733761420866 EEENEGEEF 9 Unmodified _EEENEGEEF_ 0 0 0 ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8 ENSG00000183785|ENST00000330423|TUBA8 ENSG00000183785|ENST00000330423|TUBA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2059936523438 2 556.206741 1110.39893 0.58559 0.00032571 -1.6941 -0.00094226 -1.1085 -0.00061655 556.7073696697698 96.036 0.34108 95.731 95.597 95.938 -0.30472 21 17 2 0 0 0 0.58865 1 52457 52457 2.0598 0 1 352410 7922 9198 5351 5473 9275 9275 -0.15185515654115989 EEEPFKIV 8 Unmodified _EEEPFKIV_ 0 0 0 REV__nc|ENSG00000118705|P04844-2|RPN2 REV__nc|ENSG00000118705|P04844-2|RPN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2439270019531 2 495.760758 989.506963 0.24904 0.00012346 2.7434 0.0013601 2.9924 0.0014835 495.7631389768077 78.845 0.24728 78.359 78.238 78.485 -0.48596 13 9 2 0 0 0 8.7369 1 43182 43182 8.5933 0.68312 1 480290 + 7923 19165 5352 5474 9276 9276 0.011789454577751712 EEEPKYNLKF 10 Unmodified _EEEPKYNLKF_ 0 0 0 REV__ENSG00000104879|ENST00000221476|CKM REV__ENSG00000104879|ENST00000221476|CKM MSMS AL20221201_MKP_PDAC_01 4 432.8858947753906 3 432.887199 1295.63977 NaN NaN NaN NaN NaN NaN NaN 5.9903 1 3.5083 3.0083 4.0083 -2.482 0 0 0 1.0048 1 3036 3036 0.13989 0 1 + 7924 18380 5353 5475 9277 9277 0.003773451237293557 EEERDEEEEEK 11 Unmodified _EEERDEEEEEK_ 0 0 0 REV__ENSG00000164600|ENST00000297142|NEUROD6 REV__ENSG00000164600|ENST00000297142|NEUROD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 725.79638671875 2 725.79444 1449.57433 -0.046419 -3.369E-05 -0.58479 -0.00042444 -0.63121 -0.00045813 726.2951293783592 54.356 0.33804 53.889 53.746 54.084 -0.46664 58 17 4 0 0 0 0.74096 1 29415 29415 1.1933 0.79263 1 33477000 + 7925 21927 5354 5476 9278 9278 -0.1324776565056709 EEERYVDIR 9 Unmodified _EEERYVDIR_ 0 0 0 REV__nc|ENSG00000183718|Q96A61-2|TRIM52 REV__nc|ENSG00000183718|Q96A61-2|TRIM52 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5356140136719 3 403.535048 1207.58332 NaN NaN NaN NaN NaN NaN NaN 17.554 1 17.554 17.054 18.054 0 0 0 0 0.84737 1 8659 8659 0.96228 0 1 + 7926 23370 5355 5477 9279 9279 -0.012172827129234065 EEEVPRIF 8 Unmodified _EEEVPRIF_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2921447753906 2 509.763832 1017.51311 0.45796 0.00023345 -0.56571 -0.00028838 -0.10775 -5.4927E-05 509.76335471552665 59.229 0.39684 59.229 59.004 59.4 0 23 16 2 0 0 0 8.7369 1 32925 32925 15.847 1.9411 1 9800000 7927 1311 5356 5478 9280 9280 0.005054636892964481 EEFDLRQF 8 Unmodified _EEFDLRQF_ 0 0 0 REV__ENSG00000157502|ENST00000357175|PWWP3B REV__ENSG00000157502|ENST00000357175|PWWP3B MSMS AL20221201_MKP_PDAC_01 4 542.257568359375 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 26.17 1 23.218 22.718 23.718 -2.9511 0 0 0 0.39735 1 14391 14391 54.774 18.729 1 + 7928 21386 5357 5479 9281 9281 -0.03467724316078602 EEFEHKEEVLQ 11 Unmodified _EEFEHKEEVLQ_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000489691.1_1_X:54558969-54570464:+|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.8323364257812 2 708.835714 1415.65687 -0.80183 -0.00056837 -2.6726 -0.0018944 -3.4744 -0.0024628 708.8335756070442 27.814 0.16334 27.814 27.721 27.884 0 10 7 2 0 0 0 0.65108 1 14359 14359 8.7454 0 1 1369500 7929 4179 5358 5480 9282 9282 -0.034327790610859665 EEFELRPQVLL 11 Unmodified _EEFELRPQVLL_ 0 0 0 ENST00000480011.5_1_7:156447331-156451185:+|nuORF;nc|ENSG00000105982|Q9H0A6-5|RNF32;nc|ENSG00000105982|Q9H0A6-4|RNF32;ENSG00000105982|ENST00000317955|RNF32 ENST00000480011.5_1_7:156447331-156451185:+|nuORF ENST00000480011.5_1_7:156447331-156451185:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 687.3839111328125 2 686.877185 1371.73982 4.4642 0.0030664 3.6444 0.0025033 8.1087 0.0055697 687.3804561274104 99.19 0.16835 99.162 99.077 99.246 -0.028282 8 5 2 0 0 0 0.65846 1 55111 55111 8.1555 6.5029 1 1453000 7930 14051 5359 5481 9283 9283 0.06881582457549484 EEFELRPQVLL 11 Unmodified _EEFELRPQVLL_ 0 0 0 ENST00000480011.5_1_7:156447331-156451185:+|nuORF;nc|ENSG00000105982|Q9H0A6-5|RNF32;nc|ENSG00000105982|Q9H0A6-4|RNF32;ENSG00000105982|ENST00000317955|RNF32 ENST00000480011.5_1_7:156447331-156451185:+|nuORF ENST00000480011.5_1_7:156447331-156451185:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 686.877185 1371.73982 0.29129 0.00020008 0.77557 0.00053272 1.0669 0.00073281 686.8776548537113 99.351 0.11394 99.193 99.094 99.208 -0.1575 0.015784 -0.00011544 NaN 8.1555 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 641000 7931 14051 5359 5481 0.06881582457549484 EEFEQDTWYF 10 Unmodified _EEFEQDTWYF_ 0 0 0 REV__nc|ENSG00000289758|Q92902-2|HPS1 REV__nc|ENSG00000289758|Q92902-2|HPS1 MSMS AL20221201_MKP_PDAC_01 4 697.2817993164062 2 697.282783 1392.55101 NaN NaN NaN NaN NaN NaN NaN 93.193 1 87.017 86.517 87.517 -6.1757 0 0 0 0.83398 1 61670 61670 10.824 3.5347 1 + 7932 18562 5360 5482 9284 9284 -0.12956114906569383 EEFGRQRKW 9 Unmodified _EEFGRQRKW_ 0 0 0 ENSG00000269113|ENST00000606738|TRABD2B ENSG00000269113|ENST00000606738|TRABD2B ENSG00000269113|ENST00000606738|TRABD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.3197021484375 2 618.317628 1234.6207 -0.20178 -0.00012477 -2.5285 -0.0015634 -2.7302 -0.0016882 618.8154299577326 19.14 0.15722 19.14 19.06 19.217 0 14 9 2 0 0 0 0.59812 1 9581 9581 1.4819 0 1 981950 7933 10876 5361 5483 9285 9285 0.012778533433674966 EEFIQWLL 8 Unmodified _EEFIQWLL_ 0 0 0 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7295532226562 2 539.2844 1076.55425 -0.31032 -0.00016735 -0.9234 -0.00049798 -1.2337 -0.00066533 539.7851261253345 25.924 0.18663 25.924 25.819 26.006 0 10 8 2 0 0 0 8.7369 1 13276 13276 7.2892 2.0586 1 652590 7934 5061 5362 5484 9286 9286 0.019032247287668724 EEFQPERF 8 Unmodified _EEFQPERF_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2498168945312 2 541.251089 1080.48762 0.23436 0.00012685 -0.3151 -0.00017055 -0.080737 -4.3699E-05 541.2505611970398 56.729 0.29037 56.729 56.564 56.855 0 22 12 2 0 0 0 0.36898 1 31552 31552 57.471 9.1255 1 3353400 7935 5700 5363 5485 9287 9287 -0.04940010833138331 EEFRPERF 8 Unmodified _EEFRPERF_ 0 0 0 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2713623046875 2 555.272355 1108.53016 1.0911 0.00060586 -0.18162 -0.00010085 0.90948 0.00050501 555.271552088478 34.223 0.29876 30.238 30.097 30.396 -3.9853 39 16 3 0 0 0 0.36356 1 19694 19694 48.346 0 1 14338000 7936 2408 5364 5486 9288 9288 -0.019766157048934474 EEFSGLLLL 9 Unmodified _EEFSGLLLL_ 0 0 0 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7857666015625 2 510.784233 1019.55391 0.99162 0.0005065 0.027839 1.422E-05 1.0195 0.00052072 510.78432423402194 86.318 0.60288 80.142 79.794 80.397 -6.1757 46 32 2 0 0 0 0.087258 1 56776 56776 36.044 1.9418 1 11947000 7937 973 5365 5487 9289 9289 0.04491805008922256 EEFSYDYF 8 Unmodified _EEFSYDYF_ 0 0 0 nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENST00000481328.7_1_11:76905078-76923312:+|nuORF nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000137474|Q13402-8|MYO7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.4811401367188 2 550.21638 1098.41821 NaN NaN NaN NaN NaN NaN NaN 19.144 1 19.167 18.667 19.667 0.023106 0 0 0 0.97444 1 9639 9639 0.79363 0 1 7938 4935 5366 5488 9290 9290 -0.12706514572573724 EEFVWKQD 8 Unmodified _EEFVWKQD_ 0 0 0 nc|ENSG00000071994|Q16342-3|PDCD2;ENSG00000071994|ENST00000541970|PDCD2 nc|ENSG00000071994|Q16342-3|PDCD2 nc|ENSG00000071994|Q16342-3|PDCD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7554931640625 2 540.753464 1079.49238 NaN NaN NaN NaN NaN NaN NaN 60.967 1 60.967 60.467 61.467 0 0 0 0 0.90769 1 34001 34001 18.135 3.2967 1 7939 1067 5367 5489 9291 9291 -0.044191266903681026 EEGLFDTDHYF 11 Unmodified _EEGLFDTDHYF_ 0 0 0 REV__nc|ENSG00000088926|P03951-2|F11 REV__nc|ENSG00000088926|P03951-2|F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.1950073242188 3 458.19458 1371.56191 0.72198 0.00033081 -1.8197 -0.0008338 -1.0978 -0.00050299 458.1940299142348 50.186 0.19929 49.794 49.692 49.891 -0.3923 19 9 3 0 0 0 0.73114 1 27056 27056 1.3296 0.55311 1 2086300 + 7940 17819 5368 5490 9292 9292 -0.10900712532293255 EEGSLLEENF 10 Unmodified _EEGSLLEENF_ 0 0 0 nc|ENSG00000112029|Q9UKT4-2|FBXO5;ENSG00000112029|ENST00000229758|FBXO5 nc|ENSG00000112029|Q9UKT4-2|FBXO5 nc|ENSG00000112029|Q9UKT4-2|FBXO5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.316162109375 2 583.764226 1165.5139 0.47044 0.00027462 0.0047465 2.7708E-06 0.47518 0.0002774 583.7641172659844 52.223 0.33994 51.789 51.569 51.909 -0.43367 41 16 3 0 0 0 0.23325 1 28242 28242 10.074 2.1638 1 2869600 7941 2849 5369 5491 9293 9293 -0.062237864523240205 EEGWPSPP 8 Unmodified _EEGWPSPP_ 0 0 0 REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.3919067382812 1 898.394124 897.386848 0.21022 0.00018886 -0.030575 -2.7468E-05 0.17965 0.00016139 898.3937817891078 58.088 0.3451 58.088 57.917 58.262 0 24 13 2 0 0 0 0.50673 2 32304 32304;32418 34.102 20.454 1 3178000 + 7942 28495 5370 5492 9294;9295 9294 -0.06595042815990837 EEGWPSPP 8 Unmodified _EEGWPSPP_ 0 0 0 REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 898.3936767578125 1 898.394124 897.386848 0.51422 0.00046198 0.83134 0.00074687 1.3456 0.0012088 898.3944361604636 66.2 0.3736 60.024 59.824 60.197 -6.1757 26 20 2 0 0 0 0.50673 1 43106 43106 34.102 10.082 1 13700000 + 7943 28495 5370 5492 9296 9296 -0.06595042815990837 EEGWPSPP 8 Unmodified _EEGWPSPP_ 0 0 0 REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 898.4988403320312 1 898.394124 897.386848 0.51422 0.00046198 0.83134 0.00074687 1.3456 0.0012088 898.3944361604636 66.2 0.3736 60.024 59.824 60.197 -6.1757 26 20 2 0 0 0 8.7369 1 42982 42982 34.102 9.4286 1 13700000 + 7944 28495 5370 5492 9297 9297 -0.06595042815990837 EEGWPSPP 8 Unmodified _EEGWPSPP_ 0 0 0 REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 898.394124 897.386848 0.21022 0.00018886 -0.030575 -2.7468E-05 0.17965 0.00016139 898.3937817891078 58.088 0.3451 58.088 57.917 58.262 0 0 0 NaN 34.102 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3178000 + 7945 28495 5370 5492 -0.06595042815990837 EEHEKLKLM 9 Unmodified _EEHEKLKLM_ 0 0 0 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2 ENSG00000047617|ENST00000682330|ANO2 ENSG00000047617|ENST00000682330|ANO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.542724609375 3 386.205875 1155.59579 1.2742 0.00049212 0.90209 0.00034839 2.1763 0.00084052 386.20570500032784 84.066 0.68291 77.89 77.472 78.155 -6.1757 55 36 2 0 0 0 0.41742 1 55347 55347 7.609 2.3121 1 10960000 7946 687 5371 5493 9298 9298 0.024220374257538424 EEHGAPEL 8 Unmodified _EEHGAPEL_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2037048339844 2 441.203607 880.392661 -0.12071 -5.3256E-05 1.1788 0.00052009 1.0581 0.00046683 441.2043270712485 22.727 1.1651 22.727 22.324 23.489 0 123 59 3 0 0 0 0.44122 1 11566 11566 40.449 8.3316 1 3567600 7947 628 5372 5494 9299 9299 -0.052319443043188585 EEHGAPEL 8 Unmodified _EEHGAPEL_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 881.3994750976562 1 881.399938 880.392661 -0.62662 -0.0005523 -1.0947 -0.00096487 -1.7213 -0.0015172 881.3995938984123 34.121 0.26054 34.121 34.009 34.269 0 18 13 2 0 0 0 0.19792 1 17956 17956 70.716 19.86 1 5683500 7948 628 5372 5494 9300 9300 -0.052319443043188585 EEHGAPEL 8 Unmodified _EEHGAPEL_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 881.4000854492188 1 881.399938 880.392661 0.02487 2.192E-05 0.39677 0.00034972 0.42164 0.00037164 881.400408725539 38.645 0.35113 34.276 34.11 34.461 -4.3689 27 22 2 0 0 0 0.18881 2 22789 22789;22936 74.396 20.821 1 11581000 7949 628 5372 5494 9301;9302 9301 -0.052319443043188585 EEHKEHLAF 9 Unmodified _EEHKEHLAF_ 0 0 0 ENST00000490008.1_1_3:149469904-149470237:-|nuORF;ENST00000469896.1_1_3:149468461-149470237:-|nuORF;nc|ENSG00000114744|Q86X83-2|COMMD2;ENSG00000114744|ENST00000473414|COMMD2 ENST00000490008.1_1_3:149469904-149470237:-|nuORF ENST00000490008.1_1_3:149469904-149470237:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8547668457031 3 380.520851 1138.54072 0.72605 0.00027628 -0.0010982 -4.1788E-07 0.72495 0.00027586 380.5210672678331 24.367 0.26437 21.539 21.428 21.693 -2.8273 21 14 2 0 0 0 0.49272 1 13287 13287 8.1555 0.54658 1 4006500 7950 3057 5373 5495 9303 9303 -0.023006330504813377 EEHLHLDDE 9 Unmodified _EEHLHLDDE_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 569.2694702148438 2 568.746367 1135.47818 0.02621 1.4907E-05 -2.3654 -0.0013453 -2.3391 -0.0013304 569.2466148126715 25.502 0.32199 22.619 22.371 22.693 -2.8831 23 17 2 0 0 0 0.20727 1 13845 13845 7.9102 0 1 3879000 7951 9065 5374 5496 9304 9304 -0.08413823909336315 EEHNKRLY 8 Unmodified _EEHNKRLY_ 0 0 0 REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF REV__ENST00000414673.5_1_17:16734454-16736059:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7793579101562 2 544.777805 1087.54106 NaN NaN NaN NaN NaN NaN NaN 95.108 1 95.108 94.608 95.608 0 0 0 0 0.97444 1 52574 52574 2.5775 1.0956 1 + + 7952 16846 5375 5497 9305 9305 0.0007878666938267997 EEHRLCEGI 9 Unmodified _EEHRLCEGI_ 0 0 0 ENSG00000161850|ENST00000257974|KRT82;CON__Q9NSB4 ENSG00000161850|ENST00000257974|KRT82 ENSG00000161850|ENST00000257974|KRT82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2576293945312 2 543.255848 1084.49714 0.08085 4.3922E-05 0.79908 0.0004341 0.87992 0.00047802 543.2558741832289 59.057 0.27425 58.566 58.432 58.707 -0.49079 21 12 2 0 0 0 0.5029 1 32148 32148 7.2892 1.5288 1 1509800 + 7953 212 5376 5498 9306 9306 -0.041725658192717674 EEHWKRRIFIW 11 Unmodified _EEHWKRRIFIW_ 0 0 0 REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF REV__ENST00000473481.1_1_10:27066118-27112155:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4281616210938 2 800.430784 1598.84702 NaN NaN NaN NaN NaN NaN NaN 93.322 1 93.345 92.845 93.845 0.022987 0 0 0 0.94301 1 51887 51887 0.35063 0.081612 1 + 7954 27541 5377 5499 9307 9307 0.07154597182466205 EEIEQLTEEL 10 Unmodified _EEIEQLTEEL_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.799072265625 2 616.798266 1231.58198 0.55557 0.00034268 1.1228 0.00069256 1.6784 0.0010352 616.7981953287083 68.279 1.3839 62.103 61.517 62.901 -6.1757 118 80 2 0 0 0 0.095786 1 44590 44590 47.594 11.088 1 61715000 7955 10186 5378 5500 9308 9308 -0.024549615923206147 EEIILKEEEPL 11 Unmodified _EEIILKEEEPL_ 0 0 0 REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 REV__nc|ENSG00000129675|Q15052-2|ARHGEF6 MSMS AL20221201_MKP_PDAC_01 4 671.3604125976562 2 671.361033 1340.70751 NaN NaN NaN NaN NaN NaN NaN 56.044 1 50.123 49.623 50.623 -5.9211 0 0 0 0.71476 1 35729 35729 16.149 3.1066 1 + 7956 19680 5379 5501 9309 9309 0.050787502639195736 EEIILVSF 8 Unmodified _EEIILVSF_ 0 0 0 ENSG00000103023|ENST00000567164|PRSS54 ENSG00000103023|ENST00000567164|PRSS54 ENSG00000103023|ENST00000567164|PRSS54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2681579589844 2 475.265676 948.516799 NaN NaN NaN NaN NaN NaN NaN 84.632 1 84.632 84.132 85.132 0 0 0 0 0.97444 1 46915 46915 5.2307 2.6532 1 7957 2093 5380 5502 9310 9310 0.04048133463152226 EEILYASTY 9 Unmodified _EEILYASTY_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.1915283203125 2 544.760955 1087.50736 0.31257 0.00017028 0.9606 0.0005233 1.2732 0.00069358 544.7615269066941 69.125 0.20419 69.125 68.998 69.203 0 13 8 2 0 0 0 0.20727 1 38550 38550 7.9102 2.6795 1 338830 + 7958 21005 5381 5503 9311 9311 -0.03289679613044427 EEILYASTY 9 Unmodified _EEILYASTY_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.760955 1087.50736 -0.34758 -0.00018935 0.83102 0.00045271 0.48344 0.00026336 544.7614322430275 69.631 0.22517 69.152 69.02 69.245 -0.47903 0.013672 -1.6706E-05 NaN 7.9102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 626400 + 7959 21005 5381 5503 -0.03289679613044427 EEIPAKFK 8 Unmodified _EEIPAKFK_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2714538574219 2 481.271293 960.528032 0.26822 0.00012909 0.36201 0.00017422 0.63023 0.00030331 481.27151955183257 35.904 0.25563 35.904 35.776 36.032 0 27 12 3 0 0 0 0.55032 1 18997 18997 30.225 7.4885 1 11230000 + 7960 18175 5382 5504 9312 9312 0.04618955557282334 EEKAPVKKG 9 Unmodified _EEKAPVKKG_ 0 0 0 nc|ENSG00000181163|P06748-2|NPM1 nc|ENSG00000181163|P06748-2|NPM1 nc|ENSG00000181163|P06748-2|NPM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2630004882812 2 493.287474 984.560395 -0.65714 -0.00032416 -1.9765 -0.00097501 -2.6337 -0.0012992 493.28660225360795 27.99 0.1805 27.99 27.884 28.065 0 17 11 2 0 0 0 0.19496 1 14470 14470 13.906 3.0821 1 4254900 7961 16426 5383 5505 9313 9313 0.06749742960289495 EEKDREESR 9 Unmodified _EEKDREESR_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.880859375 3 393.186308 1176.53709 1.545 0.00060748 1.5211 0.00059808 3.0661 0.0012056 393.18809828256246 41.623 0.12693 37.015 36.985 37.112 -4.6079 10 7 2 0 0 0 0.21572 1 25092 25092 4.5289 0 1 3202900 + 7962 19593 5384 5506 9314 9314 -0.04411347614995975 EEKENKWLK 9 Unmodified _EEKENKWLK_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7962036132812 2 602.322045 1202.62954 0.074119 4.4643E-05 -2.5394 -0.0015295 -2.4653 -0.0014849 602.320960789008 66.418 0.20798 66.418 66.304 66.512 0 14 8 3 0 0 0 0.21564 1 36995 36995 3.9444 0.66309 1 1040700 + 7963 19045 5385 5507 9315 9315 0.03632782189174577 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 728.8336791992188 2 728.833605 1455.65266 0.41527 0.00030267 -0.21694 -0.00015811 0.19834 0.00014455 728.8333904707305 45.955 0.31184 45.955 45.819 46.131 0 44 14 4 0 0 0 0.66968 1 25169 25169 7.1017 1.8048 1 22518000 7964 16307 5386 5508 9316 9316 -0.056942830799926014 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2275085449219 3 486.224829 1455.65266 0.21399 0.00010405 -1.0429 -0.00050708 -0.8289 -0.00040303 486.22430048238675 52.552 0.96964 52.552 51.93 52.9 0 146 43 6 0 0 0 0.69316 2 29009 29009;29121 2.2527 0 1 511340000 7965 16307 5386 5508 9317;9318 9317 -0.056942830799926014 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2241821289062 3 486.224829 1455.65266 0.60243 0.00029292 -0.30029 -0.00014601 0.30215 0.00014691 486.224665058601 52.135 0.50981 51.702 51.4 51.909 -0.43367 59 25 3 0 0 0 0.7187 1 28163 28163 1.0136 0.50762 1 3140800 7966 16307 5386 5508 9319 9319 -0.056942830799926014 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.5599060058594 3 486.224829 1455.65266 0.50724 0.00024663 -1.2446 -0.00060516 -0.73736 -0.00035852 486.22419006032885 53.222 0.98064 52.771 52.261 53.242 -0.45173 168 49 6 0 0 0 0.65846 3 28593 28593;28702;28814 6.6235 3.7802 1 469120000 7967 16307 5386 5508 9320;9321;9322 9320 -0.056942830799926014 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 728.8328857421875 2 728.833605 1455.65266 0.20538 0.00014969 -1.091 -0.00079516 -0.88562 -0.00064547 728.8327252114061 53.204 0.78771 52.752 52.36 53.148 -0.45173 145 39 6 0 0 0 0.61059 3 28826 28606;28715;28826 10.8 3.1906 1 493800000 7968 16307 5386 5508 9323;9324;9325 9325 -0.056942830799926014 EEKFQMMSLQW 11 Unmodified _EEKFQMMSLQW_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2226257324219 3 486.224829 1455.65266 0.66097 0.00032138 -0.8664 -0.00042127 -0.20544 -9.9889E-05 486.22425461275685 52.836 0.41836 52.773 52.563 52.981 -0.063423 72 20 5 0 0 0 0.69316 2 28605 28605;28704 2.2527 1.0379 1 46379000 7969 16307 5386 5508 9326;9327 9326 -0.056942830799926014 EEKIDDCIGH 10 Unmodified _EEKIDDCIGH_ 0 0 0 REV__ENST00000500626.2_1_1:155619824-155629984:-|nuORF REV__ENST00000500626.2_1_1:155619824-155629984:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8765258789062 3 386.841372 1157.50229 0.30309 0.00011725 2.5822 0.0009989 2.8853 0.0011161 386.84225644557347 36.923 0.2389 36.923 36.818 37.056 0 36 11 6 0 0 0 0.2379 1 19629 19629 2.8433 0.3448 1 3481700 + 7970 28008 5387 5509 9328 9328 -0.07016306747323142 EEKISIFSLF 10 Unmodified _EEKISIFSLF_ 0 0 0 nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 nc|ENSG00000182771|Q9ULK0-2|GRID1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.8005981445312 2 606.829172 1211.64379 0.62995 0.00038227 -2.2352 -0.0013564 -1.6053 -0.00097413 606.8262678086207 72.368 0.1941 66.192 66.064 66.259 -6.1757 11 9 2 0 0 0 0.20941 1 47294 47294 26.884 13.376 1 9269400 7971 9085 5388 5510 9329 9329 0.04643434617469211 EEKKECHQ 8 Unmodified _EEKKECHQ_ 0 0 0 ENST00000266746.10_1_12:100561203-100566904:-|nuORF;GOLGA2|p.W514Lfs*38|1|0.09|ENSG00000167110|chr9:128260601-128260602|-/A|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2 ENST00000266746.10_1_12:100561203-100566904:-|nuORF ENST00000266746.10_1_12:100561203-100566904:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7357177734375 2 515.734748 1029.45494 NaN NaN NaN NaN NaN NaN NaN 15.296 1 15.296 14.796 15.796 0 0 0 0 0.97444 1 7356 7356 2.3027 0.24298 1 7972 7573 5389 5511 9330 9330 -0.05860541227661997 EEKKRYLWFYR 11 Unmodified _EEKKRYLWFYR_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MSMS AL20221201_MKP_PDAC_01 4 809.4301147460938 2 809.43045 1616.84635 NaN NaN NaN NaN NaN NaN NaN 91.145 1 84.97 84.47 85.47 -6.1757 0 0 0 0.94313 1 60244 60244 0.26902 0 1 7973 5127 5390 5512 9331 9331 0.06259757742736838 EEKLDRANA 9 Unmodified _EEKLDRANA_ 0 0 0 ENST00000465600.1_1_10:124008150-124013568:+|nuORF;nc|ENSG00000138162|O95359-2|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2;nc|ENSG00000138162|O95359-3|TACC2;ENSG00000138162|ENST00000369005|TACC2 ENST00000465600.1_1_10:124008150-124013568:+|nuORF ENST00000465600.1_1_10:124008150-124013568:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2678833007812 2 523.26727 1044.51999 1.2509 0.00065454 2.9526 0.001545 4.2034 0.0021995 523.2686825712618 41.672 0.33997 37.064 36.846 37.186 -4.6079 42 22 2 0 0 0 0.040683 1 24969 24969 49.554 5.696 1 14173000 7974 5028 5391 5513 9332 9332 -0.0004922343014186481 EEKMREQEEKM 11 Unmodified _EEKMREQEEKM_ 0 0 0 ENSG00000174450|ENST00000567107|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.8336791992188 2 733.834333 1465.65411 NaN NaN NaN NaN NaN NaN NaN 49.527 1 49.479 48.979 49.979 -0.048824 0 0 0 0.93669 1 26760 26760 4.897 0 1 7975 8422 5392 5514 9333 9333 -0.06008693781927832 EEKPPRARNR 10 Unmodified _EEKPPRARNR_ 0 0 0 ENST00000380094.9_1_10:5931461-5931704:-|nuORF ENST00000380094.9_1_10:5931461-5931704:-|nuORF ENST00000380094.9_1_10:5931461-5931704:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2336730957031 3 418.233815 1251.67962 -0.28751 -0.00012025 -0.28369 -0.00011865 -0.5712 -0.00023889 418.23356575738484 31.35 0.16062 31.38 31.272 31.432 0.030106 11 6 2 0 0 0 0.67459 1 16437 16437 3.0723 0.22898 1 2891800 7976 12587 5393 5515 9334 9334 0.06384329637694464 EEKPSNPSCPL 11 Unmodified _EEKPSNPSCPL_ 0 0 0 REV__nc|ENSG00000078487|Q9H0M4-2|ZCWPW1 REV__nc|ENSG00000078487|Q9H0M4-2|ZCWPW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.1913757324219 3 400.857023 1199.54924 -0.38765 -0.00015539 1.5224 0.00061026 1.1347 0.00045487 400.85773449133706 23.778 0.34472 23.778 23.548 23.893 0 32 17 2 0 0 0 0.6889 1 12150 12150 2.4348 0 1 1386000 + 7977 17628 5394 5516 9335 9335 -0.04255447196169371 EEKQEWWWLY 10 Unmodified _EEKQEWWWLY_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.56640625 3 499.566348 1495.67722 NaN NaN NaN NaN NaN NaN NaN 15.726 1 15.726 15.226 16.226 0 0 0 0 1.0019 1 7602 7602 0.15932 0 1 7978 559 5395 5517 9336 9336 -0.05079563610615878 EEKQKARF 8 Unmodified _EEKQKARF_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2806396484375 2 518.282723 1034.55089 NaN NaN NaN NaN NaN NaN NaN 51.953 1 51.953 51.453 52.453 0 0 0 0 0.73801 1 28728 28728 26.341 3.1929 1 + 7979 22046 5396 5518 9337 9337 0.03499974674764417 EEKRHEYF 8 Unmodified _EEKRHEYF_ 0 0 0 REV__nc|ENSG00000198682|O95340|PAPSS2 REV__nc|ENSG00000198682|O95340|PAPSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8496398925781 3 379.848967 1136.52507 0.41722 0.00015848 0.33126 0.00012583 0.74848 0.00028431 379.84927647380215 25.318 0.34754 22.435 22.278 22.625 -2.8831 49 22 4 0 0 0 0.74687 1 13911 13911 10.151 3.9587 1 23311000 + 7980 24040 5397 5519 9338 9338 -0.03772919567518329 EEKSKQLIELE 11 Unmodified _EEKSKQLIELE_ 0 0 0 REV__ENSG00000183323|ENST00000396496|CCDC125 REV__ENSG00000183323|ENST00000396496|CCDC125 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.3626708984375 2 673.364107 1344.71366 NaN NaN NaN NaN NaN NaN NaN 89.289 1 88.787 88.287 89.287 -0.50185 0 0 0 0.93933 1 48820 48820 2.9952 1.3426 1 + 7981 23338 5398 5520 9339 9339 0.05509268495438846 EEKTETNED 9 Unmodified _EEKTETNED_ 0 0 0 ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL ENSG00000178177|ENST00000635767|LCORL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1556701660156 3 365.487652 1093.44113 0.030675 1.1211E-05 3.8728 0.0014155 3.9035 0.0014267 365.4899614164218 62.584 0.46558 62.584 62.454 62.92 0 46 16 4 0 0 0 0.5029 1 34894 34894 4.5289 0 1 3918800 7982 8733 5399 5521 9340 9340 -0.10185540245743141 EEKTGWGVIE 10 Unmodified _EEKTGWGVIE_ 0 0 0 REV__ENSG00000174776|ENST00000682715|WDR49 REV__ENSG00000174776|ENST00000682715|WDR49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1927490234375 3 383.192511 1146.5557 -0.38849 -0.00014887 0.29336 0.00011241 -0.095135 -3.6455E-05 383.19266399061144 24.14 0.26785 24.14 23.995 24.263 0 48 14 5 0 0 0 0.44373 1 12289 12289 12.175 0.68004 1 20611000 + 7983 22816 5400 5522 9341 9341 -0.01171185973134925 EEKTYYIEL 9 Unmodified _EEKTYYIEL_ 0 0 0 ENSG00000144840|ENST00000273375|RABL3 ENSG00000144840|ENST00000273375|RABL3 ENSG00000144840|ENST00000273375|RABL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.56103515625 3 396.532533 1186.57577 -0.18124 -7.1868E-05 1.0559 0.00041868 0.87462 0.00034681 396.533090061733 32.959 0.13031 32.989 32.937 33.067 0.029743 8 5 2 0 0 0 0.209 1 17313 17313 7.609 0 1 771460 7984 5651 5401 5523 9342 9342 -0.010054350331756723 EEKTYYIEL 9 Unmodified _EEKTYYIEL_ 0 0 0 ENSG00000144840|ENST00000273375|RABL3 ENSG00000144840|ENST00000273375|RABL3 ENSG00000144840|ENST00000273375|RABL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 396.532533 1186.57577 -0.22489 -8.9176E-05 -0.76605 -0.00030376 -0.99094 -0.00039294 396.53261017906965 33.185 0.25598 33.026 32.888 33.144 -0.15918 -0.0091668 -0.00077931 NaN 7.609 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2147300 7985 5651 5401 5523 -0.010054350331756723 EEKVGLKY 8 Unmodified _EEKVGLKY_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-3|FMN1 ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7056274414062 2 483.26875 964.522947 -1.0221 -0.00049395 0.23442 0.00011329 -0.78768 -0.00038066 483.26858605235316 32.557 0.15758 32.557 32.481 32.639 0 12 8 2 0 0 0 8.7369 1 16975 16975 10.183 0.83596 1 1943000 7986 10745 5402 5524 9343 9343 0.03926651694678185 EEKVYLIID 9 Unmodified _EEKVYLIID_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.307861328125 2 561.308072 1120.60159 1.201 0.00067414 -0.44716 -0.000251 0.75385 0.00042314 561.3078457473274 81.598 1.4446 75.422 74.679 76.124 -6.1757 187 81 3 0 0 0 0.028475 2 53199 53199;53362 56.177 12.321 1 46098000 + 7987 17703 5403 5525 9344;9345 9344 0.04611459209104396 EELELPNQKK 10 Unmodified _EELELPNQKK_ 0 0 0 REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF REV__ENST00000398117.1_1_18:60794470-60795067:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3323364257812 2 614.33261 1226.65067 NaN NaN NaN NaN NaN NaN NaN 93.564 1 93.564 93.064 94.064 0 0 0 0 0.99388 1 51727 51727 1.3295 0.25807 1 + 7988 26559 5404 5526 9346 9346 0.04640747498046949 EELKKEEFRKF 11 Unmodified _EELKKEEFRKF_ 0 0 0 ENSG00000160505|ENST00000301295|NLRP4 ENSG00000160505|ENST00000301295|NLRP4 ENSG00000160505|ENST00000301295|NLRP4 MSMS AL20221201_MKP_PDAC_01 4 494.9374084472656 3 494.936553 1481.78783 NaN NaN NaN NaN NaN NaN NaN 77.878 1 71.703 71.203 72.203 -6.1757 0 0 0 0.90499 1 50955 50955 7.0371 4.1938 1 7989 6732 5405 5527 9347 9347 0.06620656377572232 EELKLFNE 8 Unmodified _EELKLFNE_ 0 0 0 ENST00000560220.5_1_15:40676698-40685795:+|nuORF;nc|ENSG00000128944|Q9Y448-2|KNSTRN;ENSG00000128944|ENST00000249776|KNSTRN ENST00000560220.5_1_15:40676698-40685795:+|nuORF ENST00000560220.5_1_15:40676698-40685795:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2634582519531 2 511.263665 1020.51278 0.37572 0.00019209 -0.48305 -0.00024696 -0.10733 -5.4873E-05 511.26355367025144 31.42 0.32382 31.42 31.276 31.6 0 52 15 5 0 0 0 0.17811 1 16342 16342 78.728 0 1 14078000 7990 4102 5406 5528 9348 9348 0.0033404396941705272 EELKNENALL 10 Unmodified _EELKNENALL_ 0 0 0 ENST00000594064.5_1_19:35769874-35770156:+|nuORF;ENST00000600898.1_1_19:35769575-35770156:+|nuORF;ENST00000594264.1_1_19:35769575-35770156:+|nuORF;nc|ENSG00000105698|Q15853-4|USF2;ENST00000607959.5_1_19:35761286-35770156:+|nuORF;nc|ENSG00000105698|Q15853-3|USF2;nc|ENSG00000105698|Q15853-2|USF2;ENSG00000105698|ENST00000222305|USF2 ENST00000594064.5_1_19:35769874-35770156:+|nuORF ENST00000594064.5_1_19:35769874-35770156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8168334960938 2 586.81151 1171.60847 2.0101 0.0011796 -2.1932 -0.001287 -0.18306 -0.00010742 587.8147325565099 81.869 0.46722 81.929 81.61 82.078 0.059929 60 18 6 0 0 0 0.46514 1 45262 45262 18.146 3.3081 1 9881400 7991 2354 5407 5529 9349 9349 0.02952772089656719 EELNVNPGQLY 11 Unmodified _EELNVNPGQLY_ 0 0 0 REV__nc|ENSG00000136689|P18510-3|IL1RN REV__nc|ENSG00000136689|P18510-3|IL1RN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8154907226562 2 638.314417 1274.61428 -0.36749 -0.00023458 0.34659 0.00022123 -0.020908 -1.3346E-05 638.3146100866944 23.715 0.65092 23.715 23.448 24.099 0 127 32 5 0 0 0 0.71341 1 11986 11986 2.9952 0.49676 1 43598000 + 7992 29649 5408 5530 9350 9350 -0.0120412939866128 EELNVNPGQLY 11 Unmodified _EELNVNPGQLY_ 0 0 0 REV__nc|ENSG00000136689|P18510-3|IL1RN REV__nc|ENSG00000136689|P18510-3|IL1RN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.313720703125 2 638.314417 1274.61428 NaN NaN NaN NaN NaN NaN NaN 23.851 1 23.853 23.353 24.353 0.0020161 0 0 0 0.93933 1 12174 12174 2.9952 0 1 + 7993 29649 5408 5530 9351 9351 -0.0120412939866128 EELNVNPGQLY 11 Unmodified _EELNVNPGQLY_ 0 0 0 REV__nc|ENSG00000136689|P18510-3|IL1RN REV__nc|ENSG00000136689|P18510-3|IL1RN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.3151245117188 2 638.314417 1274.61428 0.19259 0.00012293 0.33375 0.00021304 0.52634 0.00033597 638.314845056287 23.604 0.31159 23.626 23.526 23.838 0.021185 17 13 2 0 0 0 0.71341 1 12163 12163 2.9952 0 1 2815900 + 7994 29649 5408 5530 9352 9352 -0.0120412939866128 EELNVNPGQLY 11 Unmodified _EELNVNPGQLY_ 0 0 0 REV__nc|ENSG00000136689|P18510-3|IL1RN REV__nc|ENSG00000136689|P18510-3|IL1RN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.3131103515625 2 638.314417 1274.61428 0.19259 0.00012293 0.33375 0.00021304 0.52634 0.00033597 638.314845056287 23.604 0.31159 23.626 23.526 23.838 0.021185 17 13 2 0 0 0 0.30577 1 12264 12264 1.1933 0 1 2815900 + 7995 29649 5408 5530 9353 9353 -0.0120412939866128 EELPTFAF 8 Unmodified _EELPTFAF_ 0 0 0 ENST00000510007.5_1_17:48452566-48456187:+|nuORF;ENSG00000154920|ENST00000338165|EME1;nc|ENSG00000154920|Q96AY2-2|EME1 ENST00000510007.5_1_17:48452566-48456187:+|nuORF ENST00000510007.5_1_17:48452566-48456187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2328186035156 2 477.234376 952.454199 0.9141 0.00043624 1.2866 0.00061401 2.2007 0.0010503 477.2322954595094 48.335 0.6539 43.101 42.711 43.365 -5.2339 97 39 4 0 0 0 0.67481 1 30099 30099 19.439 1.304 1 34711000 7996 6356 5409 5531 9354 9354 -0.023930126050458966 EELQVIADLC 10 Unmodified _EELQVIADLC_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1132.552734375 1 1132.55545 1131.54818 0.22328 0.00025288 1.5811 0.0017907 1.8044 0.0020435 1132.5567230193424 96.621 0.13078 96.317 96.25 96.381 -0.30473 10 7 2 0 0 0 0.57893 1 52760 52760 12.241 3.4953 1 241130 7997 4990 5410 5532 9355 9355 -0.012336615650838212 EELRNFEDF 9 Unmodified _EELRNFEDF_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1;REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2562255859375 2 599.772385 1197.53022 NaN NaN NaN NaN NaN NaN NaN 59.222 1 59.222 58.722 59.722 0 0 0 0 0.6032 1 32989 32989 12.532 4.6214 1 + 7998 23893;23629 5411 5533 9356 9356 -0.060646604955763905 EELTFHLL 8 Unmodified _EELTFHLL_ 0 0 0 nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2684631347656 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 59.226 1 59.226 58.726 59.726 0 0 0 0 0.93587 1 32991 32991 13.508 1.8676 1 7999 4680 5412 5534 9357 9357 0.022706516946755073 EELVHAGF 8 Unmodified _EELVHAGF_ 0 0 0 ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2313232421875 2 451.224342 900.434132 1.1472 0.00051766 0.71591 0.00032304 1.8632 0.0008407 451.2250284238041 32.235 0.68119 28.378 28.133 28.814 -3.8562 72 38 3 0 0 0 0.50586 1 18574 18574 34.187 7.3037 1 39654000 8000 9723 5413 5535 9358 9358 -0.020067635450004673 EELVKTMDL 9 Unmodified _EELVKTMDL_ 0 0 0 nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3 nc|ENSG00000071655|O95983-2|MBD3 nc|ENSG00000071655|O95983-2|MBD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2784423828125 2 539.278457 1076.54236 NaN NaN NaN NaN NaN NaN NaN 40.295 1 40.295 39.795 40.795 0 0 0 0 0.7243 1 21649 21649 8.5933 0 1 8001 1061 5414 5536 9359 9359 0.0071523992323818675 EELYQFPQL 9 Unmodified _EELYQFPQL_ 0 0 0 REV__nc|ENSG00000176946|Q8WY91-2|THAP4 REV__nc|ENSG00000176946|Q8WY91-2|THAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2702026367188 2 583.790047 1165.56554 0.094082 5.4924E-05 0.039146 2.2853E-05 0.13323 7.7777E-05 583.7889582354633 39.962 1.0122 39.962 39.302 40.314 0 98 49 3 0 0 0 0.30562 1 21178 21178 16.942 4.4107 1 25251000 + 8002 22953 5415 5537 9360 9360 -0.010619979677585434 EELYQRRLA 9 Unmodified _EELYQRRLA_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.62646484375 2 589.319837 1176.62512 -0.33502 -0.00019744 0.34461 0.00020309 0.0095862 5.6494E-06 589.8213755429433 34.88 0.20937 34.689 34.584 34.793 -0.19131 13 8 2 0 0 0 0.18118 1 18289 18289 18.135 5.6034 1 1596900 + 8003 19900 5416 5538 9361 9361 0.04387317766304477 EEMEMDPKPD 10 Unmodified _EEMEMDPKPD_ 0 0 0 ENSG00000119638|ENST00000238616|NEK9;ENST00000555405.5_1_14:75551269-75558248:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF ENSG00000119638|ENST00000238616|NEK9 ENSG00000119638|ENST00000238616|NEK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.4992980957031 3 407.498506 1219.47369 1.4418 0.00058753 0.31516 0.00012843 1.757 0.00071596 407.4986551263866 64.527 0.43921 58.351 58.167 58.606 -6.1757 44 24 2 0 0 0 0.69377 1 41965 41965 1.7423 0 1 15386000 8004 3448 5417 5539 9362 9362 -0.12726792438752454 EEMFLKWPIT 10 Unmodified _EEMFLKWPIT_ 0 0 0 REV__ENST00000597186.5_1_19:58640446-58640650:-|nuORF REV__ENST00000597186.5_1_19:58640446-58640650:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.8916320800781 3 431.889775 1292.6475 NaN NaN NaN NaN NaN NaN NaN 72.659 1 72.659 72.159 73.159 0 0 0 0 0.99091 1 40456 40456 0.69767 0.24315 1 + 8005 29223 5418 5540 9363 9363 0.012877811196858602 EEMGDAAG 8 Unmodified _EEMGDAAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MSMS AL20221201_MKP_PDAC_01 4 390.1481018066406 2 390.147443 778.280334 NaN NaN NaN NaN NaN NaN NaN 5.0715 1 2.5895 2.0895 3.0895 -2.482 0 0 0 0.97444 1 2577 2577 0.69038 0 1 + 8006 20435 5419 5541 9364 9364 -0.11767541372819323 EEMGDAAG 8 Unmodified _EEMGDAAG_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MSMS AL20221201_MKP_PDAC_01 4 390.1483154296875 2 390.147443 778.280334 NaN NaN NaN NaN NaN NaN NaN 13.801 1 11.298 10.798 11.798 -2.5029 0 0 0 0.97444 1 6996 6996 0.69038 0 1 + 8007 20435 5419 5541 9365 9365 -0.11767541372819323 EEMLLKHLQRM 11 Unmodified _EEMLLKHLQRM_ 0 0 0 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.3796997070312 2 714.378514 1426.74248 0.31145 0.0002225 0.46341 0.00033105 0.77486 0.00055354 714.3788212014006 46.574 0.30772 46.574 46.391 46.698 0 45 13 4 0 0 0 0.65846 1 25517 25517 8.1555 4.559 1 18919000 8008 869 5420 5542 9366 9366 0.04617391319220587 EEMYHSFY 8 Unmodified _EEMYHSFY_ 0 0 0 REV__ENSG00000145632|ENST00000274289|PLK2 REV__ENSG00000145632|ENST00000274289|PLK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1943054199219 3 369.148025 1104.42225 -0.54542 -0.00020134 -0.49114 -0.0001813 -1.0366 -0.00038264 369.48184540783495 33.769 0.24692 33.769 33.617 33.864 0 32 12 4 0 0 0 8.7369 1 17676 17676 3.9444 2.2918 1 3158400 + 8009 20783 5421 5543 9367 9367 -0.12578748350483693 EEMYWKYE 8 Unmodified _EEMYWKYE_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2469482421875 2 589.247157 1176.47976 0.59024 0.0003478 1.277 0.00075246 1.8672 0.0011003 589.2482086919288 43.382 1.2928 38.618 38.026 39.319 -4.7648 210 85 3 0 0 0 0.58902 4 26267 26115;26267;26402;26526 26.884 2.2572 1 41084000 8010 7301 5422 5544 9368;9369;9370;9371 9369 -0.10141906144917812 EENHTNQPF 9 Unmodified _EENHTNQPF_ 0 0 0 ENSG00000139517|ENST00000316334|LNX2 ENSG00000139517|ENST00000316334|LNX2 ENSG00000139517|ENST00000316334|LNX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.279296875 2 558.241252 1114.46795 0.62075 0.00034653 -0.10904 -6.0871E-05 0.51171 0.00028566 558.2414557336868 60.966 0.26457 60.966 60.885 61.149 0 25 10 3 0 0 0 0.39863 1 33972 33972 12.532 3.9383 1 775230 8011 5163 5423 5545 9372 9372 -0.08470386843919187 EENRVWHLV 9 Unmodified _EENRVWHLV_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.8062133789062 2 591.306729 1180.59891 -0.26673 -0.00015772 -0.56809 -0.00033592 -0.83482 -0.00049363 591.3064567374275 56.292 0.26257 56.292 56.162 56.424 0 21 12 2 0 0 0 0.48152 1 31281 31281 8.5933 0.68312 1 5777700 8012 9843 5424 5546 9373 9373 0.015830485948072237 EENWKWEDLF 10 Unmodified _EENWKWEDLF_ 0 0 0 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 698.8175048828125 2 698.314417 1394.61428 0.15916 0.00011114 0.52899 0.0003694 0.68814 0.00048054 698.3148700889049 66.509 0.37682 66.509 66.281 66.658 0 42 16 3 0 0 0 0.60623 2 37019 37019;37115 10.824 1.4408 1 7169400 8013 9790 5425 5547 9374;9375 9374 -0.06724129398685363 EENWKWEDLF 10 Unmodified _EENWKWEDLF_ 0 0 0 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.3150024414062 2 698.314417 1394.61428 0.25187 0.00017588 0.14313 9.9951E-05 0.395 0.00027584 698.314566612739 67.048 0.46305 66.564 66.294 66.757 -0.48323 81 21 5 0 0 0 0.63399 1 36621 36621 9.3831 1.2276 1 39928000 8014 9790 5425 5547 9376 9376 -0.06724129398685363 EENWKWEDLF 10 Unmodified _EENWKWEDLF_ 0 0 0 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.315673828125 2 698.314417 1394.61428 1.0866 0.00075878 -0.14614 -0.00010205 0.94044 0.00065672 698.3140506320791 66.506 0.38351 66.515 66.301 66.684 0.0095596 43 18 3 0 0 0 0.63399 1 36444 36444 9.3831 1.2276 1 10662000 8015 9790 5425 5547 9377 9377 -0.06724129398685363 EENWKWEDLF 10 Unmodified _EENWKWEDLF_ 0 0 0 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 ENSG00000196263|ENST00000308031|ZNF471 MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.3133544921875 2 698.314417 1394.61428 0.030726 2.1456E-05 0.51359 0.00035865 0.54431 0.0003801 698.3146679853829 77.177 1.9476 71.001 69.951 71.898 -6.1757 207 109 2 0 0 0 0.56348 4 49904 49904;50143;50384;51058 13.042 9.3831 1 45703000 8016 9790 5425 5547 9378;9379;9380;9381 9378 -0.06724129398685363 EEPADKDFWSK 11 Unmodified _EEPADKDFWSK_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.311767578125 2 676.311874 1350.6092 0.19991 0.0001352 0.1603 0.00010842 0.36022 0.00024362 676.3119804330735 54.182 0.39688 53.716 53.507 53.904 -0.46664 65 19 4 0 0 0 0.59689 2 29286 29286;29399 11.495 2.7493 1 47109000 + 8017 19463 5426 5548 9382;9383 9382 -0.0520843326130489 EEPHYCVCQF 10 Unmodified _EEPHYCVCQF_ 0 0 0 REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52 REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7493896484375 2 627.749541 1253.48453 0.38469 0.00024149 -0.72845 -0.00045728 -0.34376 -0.00021579 627.7493760360825 51.61 0.3214 51.61 51.431 51.753 0 48 14 5 0 0 0 0.66569 1 28474 28474 6.7232 0.09279 1 21801000 + 8018 22136 5427 5549 9384 9384 -0.1320734527384957 EEPPPGAGA 9 Unmodified _EEPPPGAGA_ 0 0 0 REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.692138671875 2 412.692875 823.371197 -0.41567 -0.00017155 0.18922 7.8089E-05 -0.22646 -9.3457E-05 412.6928728517076 48.354 0.30373 48.354 48.251 48.555 0 29 14 3 0 0 0 0.39863 1 26515 26515 12.532 0 1 4828700 + 8019 25466 5428 5550 9385 9385 -0.04755329333045211 EEPPPGAGA 9 Unmodified _EEPPPGAGA_ 0 0 0 REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF REV__ENST00000315930.10_3_X:137793281-137793449:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 412.692875 823.371197 -0.41567 -0.00017155 0.18922 7.8089E-05 -0.22646 -9.3457E-05 412.6928728517076 48.354 0.30373 48.354 48.251 48.555 0 0 0 NaN 12.532 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4828700 + 8020 25466 5428 5550 -0.04755329333045211 EEPSAFGLY 9 Unmodified _EEPSAFGLY_ 0 0 0 REV__ENSG00000001629|ENST00000265742|ANKIB1 REV__ENSG00000001629|ENST00000265742|ANKIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7356567382812 2 506.73474 1011.45493 0.42198 0.00021383 1.1972 0.00060666 1.6192 0.00082049 506.73498705935435 82.638 0.35466 82.638 82.456 82.811 0 22 14 2 0 0 0 0.54444 1 45820 45820 4.756 0 1 335720 + 8021 16930 5429 5551 9386 9386 -0.05034217955994791 EEPYRDTYL 9 Unmodified _EEPYRDTYL_ 0 0 0 REV__ENSG00000125482|ENST00000334270|TTF1 REV__ENSG00000125482|ENST00000334270|TTF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8528442382812 3 395.852266 1184.53497 NaN NaN NaN NaN NaN NaN NaN 18.345 1 18.368 17.868 18.868 0.023106 0 0 0 0.84564 1 9192 9192 1.0715 0 1 + 8022 19494 5430 5552 9387 9387 -0.049917763527901116 EEQELLQL 8 Unmodified _EEQELLQL_ 0 0 0 REV__ENSG00000184108|ENST00000332517|TRIML1 REV__ENSG00000184108|ENST00000332517|TRIML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2627258300781 2 501.261122 1000.50769 0.40111 0.00020106 1.543 0.00077347 1.9442 0.00097453 501.26191154667765 85.537 0.47315 85.537 85.295 85.768 0 41 19 3 0 0 0 0.80624 1 47444 47444 2.8892 0 1 493040 + 8023 23395 5431 5553 9388 9388 0.007457401068336367 EEQGIPLEY 9 Unmodified _EEQGIPLEY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2584228515625 2 539.258579 1076.50261 0.64658 0.00034867 0.37672 0.00020315 1.0233 0.00055182 539.2589297628307 46.476 0.38412 46.476 46.294 46.678 0 31 17 3 0 0 0 0.23158 1 25416 25416 20.454 10.38 1 2849700 8024 6432 5432 5554 9389 9389 -0.03258563755821342 EEQKRRAL 8 Unmodified _EEQKRRAL_ 0 0 0 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2945556640625 2 515.293622 1028.57269 0.25233 0.00013002 2.3938 0.0012335 2.6461 0.0013635 515.2949941622388 96.932 0.16878 96.932 96.826 96.995 0 12 9 2 0 0 0 0.80232 1 53566 53566 5.2307 0.90143 1 310300 + 8025 24140 5433 5555 9390 9390 0.05954779423313994 EEQLKEKFPE 10 Unmodified _EEQLKEKFPE_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8245239257812 2 638.824618 1275.63468 0.53285 0.00034039 -2.1606 -0.0013803 -1.6278 -0.0010399 638.8235893933775 99.131 0.13345 92.955 92.894 93.028 -6.1757 11 7 2 0 0 0 0.17714 1 65944 65944 36.506 3.0613 1 50398000 8026 5007 5434 5556 9391 9391 0.007890412611232023 EEQLQQIRAE 10 Unmodified _EEQLQQIRAE_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.3156127929688 2 622.317491 1242.62043 NaN NaN NaN NaN NaN NaN NaN 29.504 1 29.504 29.004 30.004 0 0 0 0 0.016026 1 15285 15285 121.35 53.508 1 + 8027 169;158 5435 5557 9392 9392 0.0088238883286067 EEQLQQLR 8 Unmodified _EEQLQQLR_ 0 0 0 REV__ENSG00000023892|ENST00000316637|DEF6 REV__ENSG00000023892|ENST00000316637|DEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2785034179688 2 522.277638 1042.54072 0.11899 6.2148E-05 0.72903 0.00038076 0.84803 0.00044291 522.277806891532 25.153 0.11715 25.136 25.07 25.187 -0.017006 6 4 2 0 0 0 0.15558 1 12900 12900 85.357 0 1 4146400 + 8028 17123 5436 5558 9393 9393 0.021153669495106442 EEQRWMEEQE 10 Unmodified _EEQRWMEEQE_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 697.286865234375 2 697.288073 1392.56159 NaN NaN NaN NaN NaN NaN NaN 18.482 1 18.482 17.982 18.982 0 0 0 0 0.99248 1 9192 9192 1.4819 0.28856 1 + 8029 24638 5437 5559 9394 9394 -0.11898455523760276 EEQSGVAAVTA 11 Unmodified _EEQSGVAAVTA_ 0 0 0 ENSG00000226372|ENST00000441525|DCAF8L1 ENSG00000226372|ENST00000441525|DCAF8L1 ENSG00000226372|ENST00000441525|DCAF8L1 MSMS AL20221201_MKP_PDAC_01 4 531.259033203125 2 531.259111 1060.50367 NaN NaN NaN NaN NaN NaN NaN 103.22 1 97.045 96.545 97.545 -6.1757 0 0 0 0.93224 1 69221 69221 5.7319 1.4026 1 8030 10590 5438 5560 9395 9395 -0.024163493868854857 EERAMRQF 8 Oxidation (M) _EERAM(Oxidation (M))RQF_ EERAM(1)RQF EERAM(52)RQF 0 0 1 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MSMS AL20221201_MKP_PDAC_01 4 542.2400512695312 2 541.756015 1081.49748 NaN NaN NaN NaN NaN NaN NaN 26.065 1 23.114 22.614 23.614 -2.9511 0 0 0 0.41481 1 14323 14323 52.268 22.044 1 8031 3013 5439 5561 9396 9396 519 -0.04001146099403741 EERERRYRERE 11 Unmodified _EERERRYRERE_ 0 0 0 ENST00000471767.1_1_5:176893910-176894598:-|nuORF;ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000471767.1_1_5:176893910-176894598:-|nuORF ENST00000471767.1_1_5:176893910-176894598:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.4081420898438 2 804.403483 1606.79241 NaN NaN NaN NaN NaN NaN NaN 95.035 1 95.035 94.535 95.535 0 0 0 0 0.94307 1 52535 52535 0.30703 0.30703 1 8032 2998 5440 5562 9397 9397 0.013289335730632956 EERERRYRERE 11 Unmodified _EERERRYRERE_ 0 0 0 ENST00000471767.1_1_5:176893910-176894598:-|nuORF;ENST00000472831.5_1_5:176884436-176895158:-|nuORF;nc|ENSG00000113758|Q16643|DBN1;nc|ENSG00000113758|Q16643-2|DBN1;ENSG00000113758|ENST00000393565|DBN1 ENST00000471767.1_1_5:176893910-176894598:-|nuORF ENST00000471767.1_1_5:176893910-176894598:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 804.4059448242188 2 804.403483 1606.79241 NaN NaN NaN NaN NaN NaN NaN 91.574 1 85.398 84.898 85.898 -6.1757 0 0 0 0.94301 1 60535 60535 0.35063 0.043601 1 8033 2998 5440 5562 9398 9398 0.013289335730632956 EERFHPQWS 9 Unmodified _EERFHPQWS_ 0 0 0 RNF213|p.R5153H|1|0.04|ENSG00000173821|chr17:80390184-80390184|G/A|missense_variant RNF213|p.R5153H|1|0.04|ENSG00000173821|chr17:80390184-80390184|G/A|missense_variant RNF213|p.R5153H|1|0.04|ENSG00000173821|chr17:80390184-80390184|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.2813720703125 2 608.280712 1214.54687 0.28929 0.00017597 -0.0068995 -4.1968E-06 0.28239 0.00017177 608.2805051321332 41.041 0.2877 41.039 40.871 41.159 -0.0017929 30 13 3 0 0 0 0.047196 1 21897 21897 46.021 6.0713 1 4971700 8034 30149 5441 5563 9399 9399 -0.05182114818944683 EERFYTKW 8 Unmodified _EERFYTKW_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2657470703125 2 579.782556 1157.55056 NaN NaN NaN NaN NaN NaN NaN 22.45 1 22.45 21.95 22.95 0 0 0 0 0.97444 1 11417 11417 2.3027 0.24298 1 8035 6893 5442 5564 9400 9400 -0.021914450451276934 EERFYTKW 8 Unmodified _EERFYTKW_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7798461914062 2 579.782556 1157.55056 NaN NaN NaN NaN NaN NaN NaN 22.493 1 22.493 21.993 22.993 0 0 0 0 0.97444 1 11441 11441 2.3027 0.4585 1 8036 6893 5442 5564 9401 9401 -0.021914450451276934 EERLEREHFW 10 Unmodified _EERLEREHFW_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 715.8455810546875 2 715.844207 1429.67386 -0.19854 -0.00014212 1.0959 0.00078451 0.89738 0.00064239 715.8452942611685 53.632 0.3267 53.569 53.463 53.789 -0.063423 61 22 3 0 0 0 0.66569 1 29077 29077 6.7232 0.99131 1 42150000 8037 6424 5443 5565 9402 9402 -0.02378813664631707 EERLEREHFWK 11 Unmodified _EERLEREHFWK_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 780.3970336914062 2 779.891689 1557.76882 -0.0047691 -3.7194E-06 3.2245 0.0025148 3.2198 0.0025111 779.8943224959074 94.97 0.13338 94.97 94.911 95.044 0 13 9 2 0 0 0 0.74203 1 52505 52505 0.30703 0.30703 1 194310 8038 6424 5444 5566 9403 9403 0.012251198065314384 EERLEREHFWK 11 Unmodified _EERLEREHFWK_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 779.891689 1557.76882 0.071985 5.6141E-05 1.4994 0.0011693 1.5714 0.0012255 780.3946138248162 95.449 0.14406 95.081 94.968 95.112 -0.36814 0.055221 -0.0011817 NaN 0.30703 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 357250 8039 6424 5444 5566 0.012251198065314384 EERLFHTLF 9 Unmodified _EERLFHTLF_ 0 0 0 REV__nc|ENSG00000070269|Q9NX78-2|TMEM260 REV__nc|ENSG00000070269|Q9NX78-2|TMEM260 MSMS AL20221201_MKP_PDAC_01 4 596.3099975585938 2 596.31148 1190.60841 NaN NaN NaN NaN NaN NaN NaN 98.895 1 92.719 92.219 93.219 -6.1757 0 0 0 0.6306 1 65700 65700 11.64 2.2572 1 + 8040 17467 5445 5567 9404 9404 0.020728168803316294 EERLLLLLLLL 11 Unmodified _EERLLLLLLLL_ 0 0 0 ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF ENST00000344924.7_1_7:134331590-134346213:+|nuORF ENST00000344924.7_1_7:134331590-134346213:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.4422607421875 2 669.441963 1336.86937 NaN NaN NaN NaN NaN NaN NaN 103.86 1 103.81 103.31 104.31 -0.048737 0 0 0 0.9435 1 57672 57672 0 0 1 8041 12023 5446 5568 9405 9405 0.2144138380754157 EERMSRCCFWR 11 Unmodified _EERMSRCCFWR_ 0 0 0 ENST00000437318.5_1_15:20588586-20648641:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000428453.5_1_15:20588586-20667676:-|nuORF ENST00000437318.5_1_15:20588586-20648641:-|nuORF ENST00000437318.5_1_15:20588586-20648641:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 751.8245849609375 2 751.826123 1501.63769 0.29433 0.00022129 -1.6656 -0.0012523 -1.3713 -0.001031 751.8247336182385 71.67 0.27219 71.194 71.047 71.319 -0.47609 19 10 2 0 0 0 0.7326 1 39227 39227 1.1933 0.88631 1 751990 8042 13212 5447 5569 9406 9406 -0.09306053429008898 EERPEKDF 8 Unmodified _EERPEKDF_ 0 0 0 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1;ENSG00000124831|ENST00000308482|LRRFIP1 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2462158203125 2 525.248546 1048.48254 0.84703 0.0004449 -2.813 -0.0014775 -1.966 -0.0010326 525.2475328543738 35.177 0.45066 31.082 30.882 31.333 -4.0951 34 26 2 0 0 0 0.27285 1 20377 20377 58.679 2.1375 1 17219000 8043 16170 5448 5570 9407 9407 -0.03976314695773908 EERSLSIPSSE 11 Unmodified _EERSLSIPSSE_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3;ENST00000461362.5_1_3:48675640-48681145:-|nuORF;ENST00000498057.1_1_3:48678700-48679554:-|nuORF nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48678700-48679554:-|nuORF nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8013916015625 2 617.301507 1232.58846 -0.019198 -1.1851E-05 1.9238 0.0011876 1.9046 0.0011757 617.3026528460929 60.684 0.32231 60.194 60.03 60.353 -0.48932 43 15 4 0 0 0 0.29134 1 33074 33074 12.241 1.4167 1 32535000 8044 385;14412 5449 5571 9408 9408 -0.018530236409105783 EERSLSIPSSE 11 Unmodified _EERSLSIPSSE_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3;ENST00000461362.5_1_3:48675640-48681145:-|nuORF;ENST00000498057.1_1_3:48678700-48679554:-|nuORF nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENST00000498057.1_1_3:48678700-48679554:-|nuORF nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 617.301507 1232.58846 0.46198 0.00028518 4.637 0.0028624 5.099 0.0031476 617.3035760247591 66.352 0.36189 60.176 60.079 60.441 -6.1757 -0.0089335 0.0030657 NaN 12.241 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 21190000 8045 385;14412 5449 5571 -0.018530236409105783 EERTYPGHL 9 Unmodified _EERTYPGHL_ 0 0 0 ENST00000591998.5_1_19:9408151-9413133:-|nuORF ENST00000591998.5_1_19:9408151-9413133:-|nuORF ENST00000591998.5_1_19:9408151-9413133:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8488159179688 3 367.848967 1100.52507 0.69487 0.00025561 -0.76906 -0.0002829 -0.074194 -2.7292E-05 367.84867715986667 25.009 0.3044 22.126 21.945 22.249 -2.8831 41 28 2 0 0 0 0.51218 1 13703 13703 4.1895 0.86986 1 19304000 8046 15714 5450 5572 9409 9409 -0.021169195675156516 EERWVPAGLS 10 Unmodified _EERWVPAGLS_ 0 0 0 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.786865234375 2 572.293288 1142.57202 0.26737 0.00015301 3.5067 0.0020069 3.7741 0.0021599 572.2945597808363 74.139 0.37912 74.183 73.985 74.364 0.043983 35 16 4 0 0 0 0.23325 1 40767 40767 10.074 0.6908 1 2755000 + 8047 21340 5451 5573 9410 9410 0.006439399836153825 EESESEQSLSE 11 Unmodified _EESESEQSLSE_ 0 0 0 REV__ENSG00000005175|ENST00000005386|RPAP3 REV__ENSG00000005175|ENST00000005386|RPAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.5064697265625 3 418.505372 1252.49429 0.0043147 1.8057E-06 1.7375 0.00072714 1.7418 0.00072895 418.5062062952745 87.398 0.32728 87.398 87.204 87.531 0 34 14 3 0 0 0 0.74203 2 48359 48359;48460 0.08335 0 1 933210 + 8048 16963 5452 5574 9411;9412 9411 -0.1218620725371693 EESFLSSFLL 10 Unmodified _EESFLSSFLL_ 0 0 0 REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.8007202148438 2 586.297704 1170.58086 0.099511 5.8343E-05 2.6255 0.0015393 2.725 0.0015977 586.2992778695166 78.196 0.28371 78.196 78.03 78.313 0 22 11 3 0 0 0 0.68719 1 43441 43441 4.3292 0 1 492380 + 8049 20528 5453 5575 9413 9413 0.0023886882945589605 EESGAPSPSPQ 11 Unmodified _EESGAPSPSPQ_ 0 0 0 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2407836914062 2 543.240918 1084.46728 NaN NaN NaN NaN NaN NaN NaN 22.781 1 22.781 22.281 23.281 0 0 0 0 0.63856 1 11594 11594 19.362 2.249 1 8050 6045 5454 5576 9414 9414 -0.07157226283607088 EESLRAKSEHE 11 Unmodified _EESLRAKSEHE_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8187866210938 2 657.817855 1313.62116 0.73108 0.00048092 -1.1831 -0.00077829 -0.45206 -0.00029738 657.8169367950082 34.822 0.29903 30.727 30.599 30.898 -4.0951 33 17 3 0 0 0 0.66428 1 20096 20096 7.609 0.31972 1 9335400 8051 7148 5455 5577 9415 9415 -0.023108165180929063 EESLRAKSEHE 11 Unmodified _EESLRAKSEHE_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 657.817855 1313.62116 0.24659 0.00016221 -1.8515 -0.0012179 -1.6049 -0.0010557 657.8167217622807 30.562 0.28043 30.592 30.456 30.737 0.030106 -0.067312 -0.00018597 NaN 7.609 41 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6050200 8052 7148 5455 5577 -0.023108165180929063 EESNYELEGK 10 Unmodified _EESNYELEGK_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2671508789062 2 599.267133 1196.51971 -0.12588 -7.5435E-05 0.7299 0.00043741 0.60402 0.00036197 599.2675024798366 22.105 0.41688 22.128 21.918 22.335 0.022896 57 18 4 0 0 0 0.012329 2 11273 11173;11273 83.429 54.942 1 10149000 + 8053 169;158 5456 5578 9416;9417 9417 -0.07068687940659402 EESQRYYW 8 Unmodified _EESQRYYW_ 0 0 0 ENST00000530104.2_1_11:111946298-111951307:+|nuORF;nc|ENSG00000150776|Q6ZUT1-3|NKAPD1;nc|ENSG00000150776|Q6ZUT1|NKAPD1;ENSG00000150776|ENST00000393047|NKAPD1 ENST00000530104.2_1_11:111946298-111951307:+|nuORF ENST00000530104.2_1_11:111946298-111951307:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.099365234375 2 580.753995 1159.49344 NaN NaN NaN NaN NaN NaN NaN 80.631 1 80.631 80.131 81.131 0 0 0 0 0.97444 1 44767 44767 0.79363 0.10326 1 8054 6074 5457 5579 9418 9418 -0.07992912321469703 EESVGLLLYY 10 Unmodified _EESVGLLLYY_ 0 0 0 REV__ENSG00000099331|ENST00000682292|MYO9B REV__ENSG00000099331|ENST00000682292|MYO9B MSMS AL20221201_MKP_PDAC_01 4 593.3048706054688 2 593.305529 1184.59651 NaN NaN NaN NaN NaN NaN NaN 101.75 1 95.577 95.077 96.077 -6.1757 0 0 0 0.92825 1 68298 68298 6.7232 0 1 + 8055 17974 5458 5580 9419 9419 0.011591553464768367 EESVVRESKSF 11 Unmodified _EESVVRESKSF_ 0 0 0 ENSG00000197405|ENST00000355085|C5AR1 ENSG00000197405|ENST00000355085|C5AR1 ENSG00000197405|ENST00000355085|C5AR1 MSMS AL20221201_MKP_PDAC_01 4 432.885986328125 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 16.89 1 14.333 13.833 14.833 -2.557 0 0 0 0.94148 1 8786 8786 1.4551 0.12547 1 8056 9948 5459 5581 9420 9420 -0.0002474436994361895 EETELETEQ 9 Unmodified _EETELETEQ_ 0 0 0 REV__ENSG00000021776|ENST00000156471|AQR REV__ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8294067382812 3 369.827786 1106.46153 0.14789 5.4694E-05 1.388 0.00051333 1.5359 0.00056803 369.82864181316114 39.395 0.30646 39.395 39.224 39.53 0 32 14 3 0 0 0 0.57757 1 21086 21086 2.7352 0.45242 1 3012700 + 8057 17111 5460 5582 9421 9421 -0.08744369585951972 EETETDQLEE 10 Unmodified _EETETDQLEE_ 0 0 0 nc|ENSG00000125740|P53539-6|FOSB;nc|ENSG00000125740|P53539-5|FOSB;nc|ENSG00000125740|P53539-2|FOSB nc|ENSG00000125740|P53539-6|FOSB nc|ENSG00000125740|P53539-6|FOSB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2471618652344 3 408.1701 1221.48847 0.16947 6.9174E-05 0.28097 0.00011468 0.45045 0.00018386 408.50528279770157 38.239 0.50777 38.239 38.049 38.556 0 185 36 7 0 0 0 0.23489 1 20565 20565 6.1918 2.8722 1 98387000 8058 16173 5461 5583 9422 9422 -0.11341305765427023 EETGHWQSMF 10 Unmodified _EETGHWQSMF_ 0 0 0 ENSG00000143375|ENST00000271636|CGN;nc|ENSG00000143375|Q9P2M7-2|CGN ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8418579101562 3 417.841484 1250.50262 0.1759 7.3497E-05 0.029317 1.225E-05 0.20521 8.5747E-05 417.84144685418926 50.99 0.37984 50.936 50.747 51.127 -0.053871 42 18 3 0 0 0 0.6966 1 27556 27556 1.5923 0 1 5737100 8059 5501 5462 5584 9423 9423 -0.11260887027469835 EETHWLSNL 9 Unmodified _EETHWLSNL_ 0 0 0 nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2 nc|ENSG00000087053|Q13614-2|MTMR2 nc|ENSG00000087053|Q13614-2|MTMR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.769287109375 2 564.769645 1127.52474 0.42289 0.00023883 -0.69596 -0.00039306 -0.27307 -0.00015422 564.7693209110163 49.17 0.23352 49.17 49.023 49.256 0 24 10 3 0 0 0 0.042911 1 27029 27029 48.346 16.229 1 4588900 8060 1448 5463 5585 9424 9424 -0.03392339287370305 EETLPKQT 8 Unmodified _EETLPKQT_ 0 0 0 REV__ENSG00000007908|ENST00000333360|SELE REV__ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7557678222656 2 473.248015 944.481476 0.49115 0.00023244 -2.3361 -0.0011055 -1.8449 -0.00087311 473.24646845515826 32.972 0.57663 29.116 28.776 29.352 -3.8562 64 35 3 0 0 0 0.75262 1 18715 18715 12.532 0 1 92898000 + 8061 17015 5464 5586 9425 9425 0.007014709353256876 EETSEIIIY 9 Unmodified _EETSEIIIY_ 0 0 0 REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7753295898438 2 548.774062 1095.53357 0.35941 0.00019724 0.31811 0.00017457 0.67752 0.0003718 548.7744120001892 56.761 0.38772 56.761 56.586 56.974 0 30 16 2 0 0 0 0.39863 1 31561 31561 12.532 0 1 18808000 + 8062 20945 5465 5587 9426 9426 -0.010374104415404872 EETYQQFLDF 10 Unmodified _EETYQQFLDF_ 0 0 0 nc|ENSG00000212643|Q15695|ZRSR2P1;ENSG00000169249|ENST00000307771|ZRSR2 nc|ENSG00000212643|Q15695|ZRSR2P1 nc|ENSG00000212643|Q15695|ZRSR2P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.2925415039062 2 660.29315 1318.57175 0.46007 0.00030378 -0.024926 -1.6458E-05 0.43514 0.00028732 660.2930530684763 90.948 0.42023 90.454 90.336 90.756 -0.49458 51 25 3 0 0 0 0.71123 1 49654 49654 1.6526 0 1 1695100 8063 7857 5466 5588 9427 9427 -0.07479524526911518 EEVDCIRLK 9 Unmodified _EEVDCIRLK_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1;ENSG00000101292|ENST00000678254|PROKR2 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.9019775390625 3 368.862108 1103.56449 1.6217 0.00059818 -3.8008 -0.001402 -2.1791 -0.00080378 368.8604487891428 21.847 0.32523 19.112 18.995 19.32 -2.7348 29 18 2 0 0 0 0.19384 1 11700 11700 7.1017 0 1 4880900 8064 7892 5467 5589 9428 9428 0.01685464391653113 EEVLPFAE 8 Unmodified _EEVLPFAE_ 0 0 0 nc|ENSG00000169247|Q8TF17-4|SH3TC2;ENST00000504517.5_1_5:148386573-148411207:-|nuORF;ENST00000510779.1_1_5:148384276-148408226:-|nuORF;nc|ENSG00000169247|Q8TF17-5|SH3TC2;ENSG00000169247|ENST00000515425|SH3TC2 nc|ENSG00000169247|Q8TF17-4|SH3TC2 nc|ENSG00000169247|Q8TF17-4|SH3TC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4559936523438 1 933.45639 932.449113 0.35957 0.00033564 0.2263 0.00021124 0.58587 0.00054688 933.4563113898907 81.792 0.23434 81.792 81.674 81.908 0 16 12 2 0 0 0 0.37649 1 45399 45399 46.921 0 1 795210 8065 7856 5468 5590 9429 9429 -0.019813164676634187 EEVTCRGRIL 10 Unmodified _EEVTCRGRIL_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5449829101562 3 392.54489 1174.61284 0.34082 0.00013379 0.61897 0.00024298 0.95979 0.00037676 392.8794316565334 47.955 0.21944 47.917 47.827 48.047 -0.038643 16 10 2 0 0 0 0.23895 1 25899 25899 2.086 0 1 2308300 8066 1064 5469 5591 9430 9430 0.03251958031592039 EEVTPKYELF 10 Unmodified _EEVTPKYELF_ 0 0 0 REV__nc|ENSG00000042813|Q9BS86-2|ZPBP REV__nc|ENSG00000042813|Q9BS86-2|ZPBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8807067871094 3 418.879933 1253.61797 0.36458 0.00015271 1.5715 0.00065827 1.9361 0.00081098 418.88070814344024 58.994 0.26627 58.934 58.819 59.085 -0.060719 23 12 3 0 0 0 0.67413 1 32157 32157 5.7834 1.0675 1 2157100 + 8067 17208 5470 5592 9431 9431 0.0013054037517576944 EEVVCNIQ 8 Unmodified _EEVVCNIQ_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2195434570312 2 467.220943 932.427332 NaN NaN NaN NaN NaN NaN NaN 61.079 1 61.079 60.579 61.579 0 0 0 0 0.95607 1 34061 34061 9.3474 0 1 8068 6858 5471 5593 9432 9432 -0.04158444487882207 EEVVTVLRGPL 11 Unmodified _EEVVTVLRGPL_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5728454589844 3 404.571322 1210.69214 1.6877 0.00068279 0.22299 9.0213E-05 1.9107 0.000773 404.571576085039 104.6 0.080513 98.426 98.376 98.457 -6.1757 5 3 2 0 0 0 0.72952 1 70050 70050 0.50596 0 1 7190200 + 8069 17670 5472 5594 9433 9433 0.09521928257390755 EEVYMAAG 8 Unmodified _EEVYMAAG_ 0 0 0 ENSG00000166897|ENST00000402918|ELFN2 ENSG00000166897|ENST00000402918|ELFN2 ENSG00000166897|ENST00000402918|ELFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 869.36767578125 1 869.370946 868.363669 0.50716 0.00044091 -4.1037 -0.0035677 -3.5966 -0.0031267 869.3673909088889 53.783 0.19376 53.783 53.705 53.899 0 13 8 2 0 0 0 0.5953 1 29833 29833 26.341 3.1929 1 1006900 8070 7547 5473 5595 9434 9434 -0.07577804924972042 EEVYNAPF 8 Unmodified _EEVYNAPF_ 0 0 0 REV__nc|ENSG00000141968|P15498-2|VAV1 REV__nc|ENSG00000141968|P15498-2|VAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 968.436767578125 1 968.435989 967.428712 0.51266 0.00049648 0.45551 0.00044114 0.96817 0.00093762 968.4365260300469 53.783 0.25791 53.783 53.665 53.923 0 19 11 2 0 0 0 0.63229 1 29819 29819 23.148 1.4018 1 3183100 + 8071 20557 5474 5596 9435 9435 -0.05630487127473316 EEWDELDGYN 10 Unmodified _EEWDELDGYN_ 0 0 0 REV__ENSG00000278803|ENST00000458091|PWWP4 REV__ENSG00000278803|ENST00000458091|PWWP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.2479858398438 2 635.24894 1268.48333 -0.13669 -8.6831E-05 -1.2063 -0.0007663 -1.343 -0.00085313 635.2482283525874 25.946 0.27509 22.995 22.894 23.169 -2.9511 27 17 2 0 0 0 0.69126 1 14324 14324 1.6526 0 1 9146300 + 8072 24675 5475 5597 9436 9436 -0.14017564837354257 EEWLILLY 8 Unmodified _EEWLILLY_ 0 0 0 REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44 REV__nc|ENSG00000155275|Q8IYL2-2|TRMT44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.79541015625 2 539.794601 1077.57465 0.17907 9.6663E-05 0.77209 0.00041677 0.95116 0.00051343 539.7949593657619 100.58 0.1489 100.45 100.37 100.52 -0.13293 11 5 3 0 0 0 0.5953 1 54905 54905 26.341 9.399 1 2100100 + 8073 21265 5476 5598 9437 9437 0.03896395388574092 EEWPERIWAL 10 Unmodified _EEWPERIWAL_ 0 0 0 REV__ENSG00000144589|ENST00000456909|STK11IP REV__ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.5594787597656 3 443.559305 1327.65609 0.51265 0.00022739 0.28338 0.0001257 0.79603 0.00035309 443.5595039408034 22.639 0.21966 19.861 19.773 19.993 -2.7784 27 16 2 0 0 0 0.63399 1 12185 12185 5.4027 0 1 5381800 + 8074 20718 5477 5599 9438 9438 0.005364710805224604 EEWTGNVKT 9 Unmodified _EEWTGNVKT_ 0 0 0 nc|ENSG00000120053|P17174-2|GOT1;ENSG00000120053|ENST00000370508|GOT1 nc|ENSG00000120053|P17174-2|GOT1 nc|ENSG00000120053|P17174-2|GOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1063.505737304688 1 1063.50547 1062.49819 0.96801 0.0010295 -0.0082754 -8.8009E-06 0.95974 0.0010207 1064.5073960677344 79.143 0.26443 72.967 72.809 73.073 -6.1757 25 14 2 0 0 0 0.32871 1 51829 51829 15.847 2.8047 1 7992800 8075 3491 5478 5600 9439 9439 -0.030560281787074928 EEYDNIIKL 9 Unmodified _EEYDNIIKL_ 0 0 0 REV__nc|ENSG00000064012|Q14790-9|CASP8 REV__nc|ENSG00000064012|Q14790-9|CASP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2965087890625 2 568.795329 1135.5761 0.44962 0.00025574 0.58403 0.0003322 1.0337 0.00058794 568.7952869828271 75.082 0.35661 75.082 74.94 75.297 0 55 22 3 0 0 0 0.1773 2 41777 41737;41777 25.399 7.253 1 1934400 + 8076 29499 5479 5601 9440;9441 9441 0.013739846866428707 EEYFNQYL 8 Unmodified _EEYFNQYL_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1;REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.1657104492188 3 369.166073 1104.47639 -0.27329 -0.00010089 1.1538 0.00042596 0.88055 0.00032507 369.1664135506429 34.488 0.19309 34.296 34.2 34.393 -0.19131 21 8 4 0 0 0 0.80722 1 18009 18009 1.4819 0.41044 1 7963500 + 8077 22790;27111 5480 5602 9442 9442 -0.07166832927282485 EEYGWHVGSL 10 Unmodified _EEYGWHVGSL_ 0 0 0 REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF REV__ENST00000569150.1_1_16:25251139-25264321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.271484375 2 588.769645 1175.52474 -0.86176 -0.00050738 1.6773 0.00098757 0.81559 0.00048019 588.7707881668584 32.125 0.16097 32.125 32.023 32.184 0 12 7 2 0 0 0 0.66569 1 16761 16761 6.7232 0 1 835800 + 8078 21276 5481 5603 9443 9443 -0.056003392873890334 EEYIHYDLF 9 Unmodified _EEYIHYDLF_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.78076171875 2 614.779679 1227.5448 NaN NaN NaN NaN NaN NaN NaN 95.985 1 95.68 95.18 96.18 -0.30472 0 0 0 0.85737 1 52423 52423 0.6015 0 1 + 8079 22458 5482 5604 9444 9444 -0.059865883474458315 EEYKKDRYFER 11 Unmodified _EEYKKDRYFER_ 0 0 0 REV__ENST00000549063.1_1_17:3579619-3585278:-|nuORF REV__ENST00000549063.1_1_17:3579619-3585278:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 521.5925903320312 3 521.591445 1561.75251 NaN NaN NaN NaN NaN NaN NaN 18.125 1 15.503 15.003 16.003 -2.6215 0 0 0 0.93767 1 9528 9528 1.9275 0.71267 1 + 8080 17718 5483 5605 9445 9445 -0.005900061502416065 EEYLQQVERHH 11 Unmodified _EEYLQQVERHH_ 0 0 0 REV__ENSG00000255587|ENST00000612677|RAB44 REV__ENSG00000255587|ENST00000612677|RAB44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.9031372070312 3 489.904023 1466.69024 -0.50499 -0.0002474 -0.3495 -0.00017122 -0.85449 -0.00041862 489.9036268357734 34.363 0.2309 34.363 34.247 34.478 0 37 11 4 0 0 0 0.71341 1 18072 18072 1.2148 0.76031 1 14778000 + 8081 24541 5484 5606 9446 9446 -0.02443732498522877 EEYRLRLRVKE 11 Unmodified _EEYRLRLRVKE_ 0 0 0 REV__nc|ENSG00000113645|Q8IX03-2|WWC1 REV__nc|ENSG00000113645|Q8IX03-2|WWC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 745.9254760742188 2 745.925532 1489.83651 NaN NaN NaN NaN NaN NaN NaN 15.916 1 15.921 15.421 16.421 0.0050564 0 0 0 0.9435 1 7955 7955 0 0 1 + 8082 18884 5485 5607 9447 9447 0.11118569737323014 EEYYPQKELNT 11 Unmodified _EEYYPQKELNT_ 0 0 0 REV__nc|ENSG00000134532|P35711-4|SOX5 REV__nc|ENSG00000134532|P35711-4|SOX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.3291015625 2 707.330264 1412.64598 -0.24471 -0.00017309 -1.7234 -0.001219 -1.9681 -0.0013921 707.8305073670266 31.648 0.17826 31.648 31.561 31.739 0 20 8 3 0 0 0 0.70069 1 16487 16487 4.1895 1.691 1 2425900 + 8083 19990 5486 5608 9448 9448 -0.04384181435375467 EEYYSHYYHYY 11 Unmodified _EEYYSHYYHYY_ 0 0 0 nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 808.8197021484375 2 808.820064 1615.62557 NaN NaN NaN NaN NaN NaN NaN 101.45 1 101.41 100.91 101.91 -0.04216 0 0 0 0.9435 1 56363 56363 0 0 1 8084 820 5487 5609 9449 9449 -0.15761352095159964 EFAAHLFRTL 10 Unmodified _EFAAHLFRTL_ 0 0 0 ENST00000483992.5_1_2:27994849-27995155:+|nuORF ENST00000483992.5_1_2:27994849-27995155:+|nuORF ENST00000483992.5_1_2:27994849-27995155:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.828125 2 602.827298 1203.64004 0.28871 0.00017404 -0.53511 -0.00032258 -0.2464 -0.00014854 602.82745159544 72.055 0.3812 72.094 71.809 72.19 0.039024 40 18 4 0 0 0 0.30444 1 39609 39609 27.223 14.181 1 4171100 8085 14143 5488 5610 9450 9450 0.04636809634257588 EFACNVDETF 10 Unmodified _EFACNVDETF_ 0 0 0 REV__nc|ENSG00000008838|O75448-2|MED24 REV__nc|ENSG00000008838|O75448-2|MED24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7391967773438 2 587.739696 1173.46484 NaN NaN NaN NaN NaN NaN NaN 72.257 1 71.781 71.281 72.281 -0.47609 0 0 0 0.97302 1 39544 39544 3.5965 1.2938 1 + 8086 17029 5489 5611 9451 9451 -0.11495398012948499 EFAEPPLSLLR 11 Unmodified _EFAEPPLSLLR_ 0 0 0 REV__ENSG00000079435|ENST00000244289|LIPE REV__ENSG00000079435|ENST00000244289|LIPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3553466796875 2 636.353345 1270.69214 0.038873 2.4737E-05 -0.18317 -0.00011656 -0.1443 -9.1823E-05 636.3533020337351 99.901 0.66164 99.743 99.153 99.815 -0.1575 60 22 3 0 0 0 0.71341 1 54341 54341 2.9952 0 1 9686700 + 8087 17650 5490 5612 9452 9452 0.06761928257355976 EFANTNKD 8 Unmodified _EFANTNKD_ 0 0 0 REV__ENST00000430423.5_1_3:48960216-48965004:+|nuORF REV__ENST00000430423.5_1_3:48960216-48965004:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 938.4246826171875 1 938.421401 937.414125 0.24961 0.00023424 3.1681 0.0029731 3.4178 0.0032073 938.4249206853863 59.722 0.24458 59.231 59.069 59.313 -0.49079 17 11 2 0 0 0 0.5284 1 32471 32471 32.117 1.4804 1 2098100 + 8088 26965 5491 5613 9453 9453 -0.05708559275615244 EFAPLMPIL 9 Unmodified _EFAPLMPIL_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2;REV__ENST00000549311.7_1_12:53443879-53456445:+|nuORF REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.787109375 2 515.785721 1029.55689 0.15262 7.8718E-05 1.9316 0.00099628 2.0842 0.001075 515.7862616262742 59.911 0.21218 59.421 59.333 59.545 -0.49079 12 10 2 0 0 0 0.28047 1 32629 32629 18.135 3.2967 1 1314000 + 8089 18734;28694 5492 5614 9454 9454 0.043293568620583756 EFAQLLQGP 9 Unmodified _EFAQLLQGP_ 0 0 0 REV__nc|ENSG00000147133|P21675-23|TAF1 REV__nc|ENSG00000147133|P21675-23|TAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7667846679688 2 501.766374 1001.5182 0.54882 0.00027538 0.6527 0.0003275 1.2015 0.00060288 501.7666944212375 61.218 0.45802 61.218 60.975 61.433 0 63 19 4 0 0 0 0.30562 1 34056 34056 16.942 3.0362 1 8202600 + 8090 20868 5493 5615 9455 9455 0.017497675519166478 EFAQPTLSPY 10 Unmodified _EFAQPTLSPY_ 0 0 0 REV__nc|ENSG00000147257|P51654-2|GPC3 REV__nc|ENSG00000147257|P51654-2|GPC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7838134765625 2 576.782222 1151.54989 NaN NaN NaN NaN NaN NaN NaN 95.776 1 95.408 94.908 95.908 -0.36814 0 0 0 0.99091 1 52312 52312 1.6526 0 1 + 8091 20880 5494 5616 9456 9456 -0.019822844848022214 EFARRMMPY 9 Unmodified _EFARRMMPY_ 0 0 0 REV__ENSG00000138622|ENST00000261917|HCN4 REV__ENSG00000138622|ENST00000261917|HCN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8587036132812 3 400.859933 1199.55797 -0.45049 -0.00018058 -0.51395 -0.00020602 -0.96444 -0.00038661 400.85971724082833 21.244 0.18044 21.244 21.143 21.323 0 86 26 4 0 0 0 0.58865 1 10685 10685 1.0715 0.29493 1 12952000 + 8092 20347 5495 5617 9457 9457 -0.033827520406703115 EFASEYEAF 9 Unmodified _EFASEYEAF_ 0 0 0 ENSG00000150394|ENST00000577390|CDH8 ENSG00000150394|ENST00000577390|CDH8 ENSG00000150394|ENST00000577390|CDH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7312622070312 2 546.729655 1091.44476 1.3776 0.00075317 0.47158 0.00025783 1.8492 0.001011 546.729922929175 79.382 0.53698 73.206 72.911 73.448 -6.1757 75 30 3 0 0 0 0.30562 2 51888 51888;52162 16.942 1.0951 1 78255000 8093 6053 5496 5618 9458;9459 9458 -0.09730825681253918 EFATEGTDHK 10 Unmodified _EFATEGTDHK_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF ENST00000418303.1_1_7:43958366-43959461:+|nuORF ENST00000418303.1_1_7:43958366-43959461:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8394470214844 3 378.840249 1133.49892 -0.36789 -0.00013937 -1.0021 -0.00037963 -1.37 -0.000519 378.83966106196425 23.934 0.28763 23.934 23.811 24.099 0 20 13 2 0 0 0 0.6966 1 12234 12234 1.5923 0 1 880560 8094 13067 5497 5619 9460 9460 -0.06249233529661069 EFATSQLSF 9 Unmodified _EFATSQLSF_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2490844726562 2 515.248015 1028.48148 0.58705 0.00030248 -0.28868 -0.00014874 0.29837 0.00015374 515.2480149595434 49.361 0.52092 49.361 49.174 49.695 0 62 22 4 0 0 0 0.10734 1 27129 27129 32.305 3.2239 1 24519000 8095 16555 5498 5620 9461 9461 -0.03162529064661612 EFCLPETEL 9 Unmodified _EFCLPETEL_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.8353576660156 3 360.835447 1079.48451 0.67682 0.00024422 0.09677 3.4918E-05 0.77359 0.00027914 360.8353100566189 73.797 0.26122 73.321 73.208 73.469 -0.47588 21 12 2 0 0 0 0.49272 1 40388 40388 4.897 0 1 1617900 8096 2191 5499 5621 9462 9462 -0.052050220021556015 EFDAVLADF 9 Unmodified _EFDAVLADF_ 0 0 0 nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.742919921875 2 513.742565 1025.47058 0.23123 0.00011879 -0.33303 -0.00017109 -0.10179 -5.2295E-05 513.7422615129917 87.064 0.34996 87.064 86.894 87.244 0 43 22 3 0 0 0 0.30562 2 48267 48168;48267 16.942 9.0321 1 661140 8097 2062 5500 5622 9463;9464 9464 -0.0411393143897385 EFDCMCVVCL 10 Unmodified _EFDCMCVVCL_ 0 0 0 REV__nc|ENSG00000137075|Q9H0F5-5|RNF38 REV__nc|ENSG00000137075|Q9H0F5-5|RNF38 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 580.8203735351562 2 581.225999 1160.43744 0.94392 0.00054863 -2.3357 -0.0013576 -1.3918 -0.00080895 581.2249053027836 63.467 0.38663 57.292 57.177 57.564 -6.1757 37 21 2 0 0 0 0.23862 1 40968 40968 3.9444 3.9444 1 13574000 + 8098 20209 5501 5623 9465 9465 -0.13635664140815607 EFDKLFEDL 9 Unmodified _EFDKLFEDL_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2821044921875 2 578.282054 1154.54956 1.3267 0.00076719 -0.96538 -0.00055826 0.3613 0.00020893 578.2813130090316 87.976 0.72832 81.8 81.512 82.24 -6.1757 104 40 3 0 0 0 0.12424 1 58144 58144 30.637 3.7529 1 69381000 8099 1062 5502 5624 9466 9466 -0.021537042046475108 EFDKNIALL 9 Unmodified _EFDKNIALL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7951049804688 2 531.795132 1061.57571 0.26544 0.00014116 -1.3021 -0.00069244 -1.0366 -0.00055128 531.7940093383016 62.305 0.36362 62.305 62.143 62.506 0 48 25 3 0 0 0 0.024882 1 34740 34740 58.679 22.552 1 12898000 8100 8890 5503 5625 9467 9467 0.04738609757464474 EFDLLDVRF 9 Unmodified _EFDLLDVRF_ 0 0 0 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2979125976562 2 577.298039 1152.58152 0.33199 0.00019166 0.89177 0.00051481 1.2238 0.00070647 577.2988697539565 94 0.15094 94 93.941 94.091 0 11 8 2 0 0 0 0.40476 1 51986 51986 12.241 6.9438 1 261470 8101 4054 5504 5626 9468 9468 0.011337082691397882 EFDLLDVRF 9 Unmodified _EFDLLDVRF_ 0 0 0 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2989501953125 2 577.298039 1152.58152 0.48066 0.00027749 0.91098 0.00052591 1.3916 0.00080339 577.2984780063167 94.492 0.36319 94.071 93.89 94.253 -0.42043 47 19 3 0 0 0 0.2324 2 51661 51568;51661 20.415 10.341 1 1810000 8102 4054 5504 5626 9469;9470 9470 0.011337082691397882 EFDLLDVRF 9 Unmodified _EFDLLDVRF_ 0 0 0 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2991333007812 2 577.298039 1152.58152 0.37299 0.00021533 3.0302 0.0017493 3.4032 0.0019646 577.3000874172781 99.724 0.14919 93.549 93.474 93.623 -6.1757 16 9 2 0 0 0 0.01958 1 66527 66527 63.961 33.324 1 42775000 8103 4054 5504 5626 9471 9471 0.011337082691397882 EFDLRGIPLDF 11 Unmodified _EFDLRGIPLDF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;nc|ENSG00000138119|Q9NZM1-4|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.342041015625 2 661.342978 1320.6714 NaN NaN NaN NaN NaN NaN NaN 88.864 1 88.864 88.364 89.364 0 0 0 0 0.93933 1 49179 49179 2.9952 1.3426 1 8104 5021 5505 5627 9472 9472 0.02389337877707476 EFDQLQKYSEY 11 Unmodified _EFDQLQKYSEY_ 0 0 0 ENST00000466466.1_1_3:186024671-186038248:-|nuORF;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG ENST00000466466.1_1_3:186024671-186038248:-|nuORF ENST00000466466.1_1_3:186024671-186038248:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.5547790527344 3 483.889268 1448.64598 NaN NaN NaN NaN NaN NaN NaN 16.142 1 16.147 15.647 16.647 0.0050564 0 0 0 0.94337 1 8079 8079 0.094841 0 1 8105 810 5506 5628 9473 9473 -0.06040181435355407 EFDRFIVHG 9 Unmodified _EFDRFIVHG_ 0 0 0 REV__EFCAB11|p.S148I|1|0.06|ENSG00000140025|chr14:89797292-89797292|C/A|missense_variant REV__EFCAB11|p.S148I|1|0.06|ENSG00000140025|chr14:89797292-89797292|C/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.3123779296875 2 560.282723 1118.55089 1.2041 0.00067466 0.42595 0.00023865 1.6301 0.00091331 560.2834415504277 48.563 0.16182 43.167 43.024 43.186 -5.3961 13 9 2 0 0 0 0.20139 1 30226 30226 10.824 2.2306 1 8766400 + 8106 16917 5507 5629 9474 9474 -0.003640253252342518 EFDSDDELEE 10 Unmodified _EFDSDDELEE_ 0 0 0 REV__nc|ENSG00000066032|P26232-4|CTNNA2 REV__nc|ENSG00000066032|P26232-4|CTNNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2308959960938 2 614.230413 1226.44627 0.72116 0.00044296 0.53634 0.00032943 1.2575 0.00077239 614.2308482665235 49.522 0.298 49.522 49.373 49.671 0 32 12 4 0 0 0 0.66569 1 27251 27251 6.7232 0 1 7547000 + 8107 17393 5508 5630 9475 9475 -0.1578928117378382 EFDSDNFGYI 10 Unmodified _EFDSDNFGYI_ 0 0 0 REV__ENSG00000183914|ENST00000572933|DNAH2 REV__ENSG00000183914|ENST00000572933|DNAH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.5049743652344 3 402.836504 1205.48768 NaN NaN NaN NaN NaN NaN NaN 78.379 1 77.893 77.393 78.393 -0.48596 0 0 0 0.99091 1 42928 42928 0.69767 0 1 + 8108 23387 5509 5631 9476 9476 -0.10684055623778477 EFDYMCQY 8 Unmodified _EFDYMCQY_ 0 0 0 ENST00000534803.1_1_11:35474916-35547133:-|nuORF;ENSG00000149090|ENST00000619888|PAMR1;nc|ENSG00000149090|Q6UXH9-2|PAMR1 ENST00000534803.1_1_11:35474916-35547133:-|nuORF ENST00000534803.1_1_11:35474916-35547133:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.8004760742188 3 366.801749 1097.38342 NaN NaN NaN NaN NaN NaN NaN 4.3977 1 1.9158 1.4158 2.4158 -2.482 0 0 0 0.97444 1 2232 2232 0.40072 0.1317 1 8109 5981 5510 5632 9477 9477 -0.16137796976522623 EFEDGFDCFL 10 Unmodified _EFEDGFDCFL_ 0 0 0 REV__ENSG00000033178|ENST00000322244|UBA6 REV__ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.16552734375 3 407.830473 1220.46959 1.2175 0.00049652 -0.49407 -0.0002015 0.7234 0.00029503 407.83019306894664 71.766 0.28318 65.59 65.462 65.745 -6.1757 30 15 3 0 0 0 0.69377 1 47004 47004 1.7423 0 1 31295000 + 8110 17155 5511 5633 9478 9478 -0.13182513870151524 EFEDIQHF 8 Unmodified _EFEDIQHF_ 0 0 0 ENST00000481894.1_1_1:115165698-115167864:-|nuORF;nc|ENSG00000175984|Q68D51-2|DENND2C;nc|ENSG00000175984|Q68D51-3|DENND2C;ENSG00000175984|ENST00000393274|DENND2C ENST00000481894.1_1_1:115165698-115167864:-|nuORF ENST00000481894.1_1_1:115165698-115167864:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7374877929688 2 532.737814 1063.46108 NaN NaN NaN NaN NaN NaN NaN 24.485 1 24.484 23.984 24.984 -0.0016766 0 0 0 0.85111 1 12514 12514 20.871 10.688 1 8111 8555 5512 5634 9479 9479 -0.0681169972447151 EFEEVEAAIK 10 Unmodified _EFEEVEAAIK_ 0 0 0 ENSG00000166173|ENST00000299213|LARP6 ENSG00000166173|ENST00000299213|LARP6 ENSG00000166173|ENST00000299213|LARP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7931518554688 2 582.792786 1163.57102 0.17276 0.00010068 0.75297 0.00043883 0.92573 0.00053951 582.7930375985698 93.292 0.34157 93.292 93.132 93.473 0 39 21 2 0 0 0 0.71981 1 51535 51535 0.40072 0 1 564730 8112 7445 5513 5635 9480 9480 -0.004223191759592737 EFEFTTLDF 9 Unmodified _EFEFTTLDF_ 0 0 0 ENSG00000187742|ENST00000375807|SECISBP2;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7608642578125 2 574.760955 1147.50736 NaN NaN NaN NaN NaN NaN NaN 84.74 1 84.74 84.24 85.24 0 0 0 0 0.84564 1 46973 46973 2.0598 0 1 8113 9591 5514 5636 9481 9481 -0.06049679613056469 EFEIFPWQR 9 Unmodified _EFEIFPWQR_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.811279296875 2 626.31148 1250.60841 -0.20581 -0.0001289 -1.1838 -0.00074142 -1.3896 -0.00087032 626.3109884907735 21.895 0.29045 21.895 21.811 22.102 0 62 33 2 0 0 0 0.61381 1 11082 11082 0.52476 0.066424 1 1606400 + 8114 22951 5515 5637 9482 9482 -0.0068718311968041235 EFEKQLRCI 9 Unmodified _EFEKQLRCI_ 0 0 0 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.205810546875 3 389.205986 1164.59613 -0.67602 -0.00026311 -1.5823 -0.00061585 -2.2583 -0.00087896 389.20608943636483 27.285 0.23848 27.285 27.139 27.377 0 28 11 4 0 0 0 0.41742 1 14023 14023 7.609 0 1 5616800 + 8115 23050 5516 5638 9483 9483 0.020414571456285557 EFELLQGMF 9 Unmodified _EFELLQGMF_ 0 0 0 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 REV__nc|ENSG00000143507|Q9Y6W6-2|DUSP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2786865234375 2 557.267893 1112.52123 0.43244 0.00024099 0.50393 0.00028082 0.93637 0.00052181 557.268181014661 86.338 0.44043 86.338 86.098 86.538 0 63 21 4 0 0 0 0.58865 1 47735 47735 2.0598 0 1 2516500 + 8116 20645 5517 5639 9484 9484 -0.030527253855780145 EFEPRHYR 8 Unmodified _EFEPRHYR_ 0 0 0 REV__nc|ENSG00000170185|Q8NB14-2|USP38 REV__nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2151489257812 3 378.521074 1132.54139 0.25903 9.805E-05 0.43532 0.00016478 0.69435 0.00026283 378.5213704526759 31.323 0.25664 31.221 31.053 31.309 -0.10269 16 9 2 0 0 0 8.7369 1 16264 16264 6.2058 4.5532 1 1339700 + 8117 22453 5518 5640 9485 9485 -0.01957793610790759 EFERAGFP 8 Unmodified _EFERAGFP_ 0 0 0 ENST00000452194.5_1_6:122720857-122720953:+|nuORF ENST00000452194.5_1_6:122720857-122720953:+|nuORF ENST00000452194.5_1_6:122720857-122720953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7294616699219 2 476.729792 951.445031 0.29616 0.00014119 -0.53339 -0.00025428 -0.23723 -0.00011309 476.72975523061535 56.754 0.29155 56.754 56.609 56.9 0 21 12 2 0 0 0 0.48669 1 31592 31592 36.044 12.896 1 1830200 8118 13540 5519 5641 9486 9486 -0.032633611707069576 EFFFPFYFF 9 Unmodified _EFFFPFYFF_ 0 0 0 ENST00000357214.5_1_1:35649661-35649919:-|nuORF ENST00000357214.5_1_1:35649661-35649919:-|nuORF ENST00000357214.5_1_1:35649661-35649919:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.799560546875 2 645.797143 1289.57973 NaN NaN NaN NaN NaN NaN NaN 90.888 1 90.888 90.388 91.388 0 0 0 0 0.84564 1 50273 50273 2.0598 0.73022 1 8119 12110 5520 5642 9487 9487 -0.05347300748826456 EFFFPFYFF 9 Unmodified _EFFFPFYFF_ 0 0 0 ENST00000357214.5_1_1:35649661-35649919:-|nuORF ENST00000357214.5_1_1:35649661-35649919:-|nuORF ENST00000357214.5_1_1:35649661-35649919:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.7970581054688 2 645.797143 1289.57973 NaN NaN NaN NaN NaN NaN NaN 91.171 1 91.171 90.671 91.671 0 0 0 0 0.84564 1 50424 50424 2.0598 0.57785 1 8120 12110 5520 5642 9488 9488 -0.05347300748826456 EFFFWSYKL 9 Unmodified _EFFFWSYKL_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MSMS AL20221201_MKP_PDAC_01 4 422.8766784667969 3 422.877975 1265.6121 NaN NaN NaN NaN NaN NaN NaN 56.468 1 50.491 49.991 50.991 -5.9769 0 0 0 0.54558 1 36032 36032 14.405 0.88672 1 + 8121 20877 5521 5643 9489 9489 -0.010085133458233031 EFFGPCRTI 9 Unmodified _EFFGPCRTI_ 0 0 0 REV__nc|ENSG00000121057|Q92667-2|AKAP1 REV__nc|ENSG00000121057|Q92667-2|AKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2647705078125 2 535.260402 1068.50625 0.65849 0.00035247 4.2202 0.0022589 4.8787 0.0026114 535.2632289973936 60.13 0.34278 60.13 60.003 60.345 0 23 14 3 0 0 0 0.51218 1 33548 33548 6.7232 0.36906 1 1435100 + 8122 29606 5522 5644 9490 9490 -0.02526172462944487 EFFGPCRTI 9 Unmodified _EFFGPCRTI_ 0 0 0 REV__nc|ENSG00000121057|Q92667-2|AKAP1 REV__nc|ENSG00000121057|Q92667-2|AKAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.260402 1068.50625 0.65849 0.00035247 4.2202 0.0022589 4.8787 0.0026114 535.2632289973936 60.13 0.34278 60.13 60.003 60.345 0 0 0 NaN 6.7232 23 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1435100 + 8123 29606 5522 5644 -0.02526172462944487 EFFYEKAILKF 11 Unmodified _EFFYEKAILKF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.9270324707031 3 478.927106 1433.75949 0.23313 0.00011165 0.90237 0.00043217 1.1355 0.00054382 478.9272395314128 75.573 0.29582 75.621 75.454 75.75 0.047951 36 13 4 0 0 0 0.21145 1 41657 41657 31.462 29.027 1 3042300 8124 2534 5523 5645 9491 9491 0.05995958468315621 EFFYEKAILKF 11 Unmodified _EFFYEKAILKF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2624816894531 3 478.927106 1433.75949 1.274 0.00061013 1.2892 0.00061743 2.5631 0.0012276 479.2622559491155 95.318 0.2081 89.142 89.056 89.264 -6.1757 15 11 2 0 0 0 0.40509 1 63134 63134 21.241 18.61 1 13277000 8125 2534 5523 5645 9492 9492 0.05995958468315621 EFGEWCEFS 9 Unmodified _EFGEWCEFS_ 0 0 0 nc|ENSG00000243708|P0C869-4|PLA2G4B;ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B nc|ENSG00000243708|P0C869-4|PLA2G4B nc|ENSG00000243708|P0C869-4|PLA2G4B MSMS AL20221201_MKP_PDAC_01 4 567.2176513671875 2 567.215857 1132.41716 NaN NaN NaN NaN NaN NaN NaN 77.612 1 71.436 70.936 71.936 -6.1757 0 0 0 0.6306 1 50772 50772 11.64 3.047 1 8126 10712 5524 5646 9493 9493 -0.14375052213131312 EFGPDWNTGPA 11 Unmodified _EFGPDWNTGPA_ 0 0 0 REV__ENST00000567489.5_1_16:2510159-2510671:+|nuORF REV__ENST00000567489.5_1_16:2510159-2510671:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.7592163085938 2 595.759278 1189.504 -0.33205 -0.00019782 0.0043705 2.6038E-06 -0.32768 -0.00019522 595.7593406343626 31.274 0.21692 31.304 31.174 31.391 0.030106 19 8 3 0 0 0 0.66428 1 16364 16364 7.609 2.3121 1 3401400 + 8127 28930 5525 5647 9494 9494 -0.08316929667034856 EFGPDWNTGPA 11 Unmodified _EFGPDWNTGPA_ 0 0 0 REV__ENST00000567489.5_1_16:2510159-2510671:+|nuORF REV__ENST00000567489.5_1_16:2510159-2510671:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 595.759278 1189.504 -0.33205 -0.00019782 0.0043705 2.6038E-06 -0.32768 -0.00019522 595.7593406343626 31.274 0.21692 31.304 31.174 31.391 0.030106 0 0 NaN 7.609 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3401400 + 8128 28930 5525 5647 -0.08316929667034856 EFHALTENSS 10 Unmodified _EFHALTENSS_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8390197753906 3 378.840249 1133.49892 NaN NaN NaN NaN NaN NaN NaN 26.359 1 26.328 25.828 26.828 -0.031708 0 0 0 0.8671 1 13552 13552 5.4027 0.99656 1 + 8129 20652 5526 5648 9495 9495 -0.06249233529661069 EFHALTENSS 10 Unmodified _EFHALTENSS_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8393859863281 3 378.840249 1133.49892 NaN NaN NaN NaN NaN NaN NaN 27.901 1 27.854 27.354 28.354 -0.046408 0 0 0 0.95103 1 14390 14390 3.0723 0 1 + 8130 20652 5526 5648 9496 9496 -0.06249233529661069 EFHDPLIYI 9 Unmodified _EFHDPLIYI_ 0 0 0 nc|ENSG00000008083|Q92833-2|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;ENSG00000008083|ENST00000341776|JARID2 nc|ENSG00000008083|Q92833-2|JARID2 nc|ENSG00000008083|Q92833-2|JARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8038940429688 2 573.795132 1145.57571 0.47988 0.00027535 2.855 0.0016382 3.3349 0.0019135 573.795380419641 65.132 0.34306 64.648 64.448 64.791 -0.48428 42 15 4 0 0 0 0.28047 1 35524 35524 18.135 2.2878 1 3102500 8131 376 5527 5649 9497 9497 0.008746097574885425 EFHKWSTII 9 Unmodified _EFHKWSTII_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5415954589844 3 387.541475 1159.60259 0.25172 9.7553E-05 0.85155 0.00033001 1.1033 0.00042757 387.54181073015553 51.992 0.21282 51.933 51.814 52.027 -0.058918 21 9 3 0 0 0 0.54444 1 28172 28172 2.7352 0 1 1710200 8132 6530 5528 5650 9498 9498 0.029177183686670105 EFHNRVIFF 9 Unmodified _EFHNRVIFF_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.813720703125 2 604.81419 1207.61383 -0.13247 -8.0118E-05 0.12216 7.3883E-05 -0.010309 -6.2351E-06 604.8142173473125 95.552 0.2067 95.552 95.467 95.674 0 23 13 2 0 0 0 0.58865 1 52805 52805 2.0598 0.40713 1 565460 8133 4537 5529 5651 9499 9499 0.01832540462783072 EFHQCLKN 8 Unmodified _EFHQCLKN_ 0 0 0 REV__nc|ENSG00000165698|Q96E40-2|SPACA9 REV__nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7405700683594 2 509.742376 1017.4702 0.58576 0.00029859 -3.1875 -0.0016248 -2.6017 -0.0013262 509.74078880986775 50.054 0.22183 49.662 49.55 49.772 -0.3923 17 10 2 0 0 0 0.67481 1 26958 26958 19.439 3.5918 1 3105000 + 8134 22041 5530 5652 9500 9500 -0.03783629639792707 EFHQCLKN 8 Unmodified _EFHQCLKN_ 0 0 0 REV__nc|ENSG00000165698|Q96E40-2|SPACA9 REV__nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.742376 1017.4702 0.58576 0.00029859 -3.1875 -0.0016248 -2.6017 -0.0013262 509.74078880986775 50.054 0.22183 49.662 49.55 49.772 -0.3923 0.040986 0.00039934 NaN 19.439 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3105000 + 8135 22041 5530 5652 -0.03783629639792707 EFHSFYLKGKM 11 Unmodified _EFHSFYLKGKM_ 0 0 0 REV__ENST00000466199.1_1_7:2406190-2411546:+|nuORF REV__ENST00000466199.1_1_7:2406190-2411546:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.899658203125 3 462.900674 1385.68019 NaN NaN NaN NaN NaN NaN NaN 26.162 1 26.131 25.631 26.631 -0.031708 0 0 0 0.94165 1 13444 13444 1.3296 0.82369 1 + 8136 27404 5531 5653 9501 9501 0.0027798824248748133 EFHVDGKELI 10 Unmodified _EFHVDGKELI_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8094482421875 2 593.808771 1185.60299 1.1973 0.00071095 -1.4445 -0.00085774 -0.24721 -0.00014679 593.8081311370347 97.459 0.19893 91.283 91.186 91.384 -6.1757 17 10 2 0 0 0 0.36296 1 64592 64592 23.79 2.9186 1 11823000 8137 2488 5532 5654 9502 9502 0.017610932978641358 EFHVRGGL 8 Unmodified _EFHVRGGL_ 0 0 0 REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7458801269531 2 457.745776 913.477 0.31867 0.00014587 1.5583 0.0007133 1.877 0.00085917 457.74637046600657 70.914 0.30479 70.437 70.331 70.636 -0.47736 23 13 2 0 0 0 0.80676 1 38783 38783 2.5775 0 1 1481600 + 8138 25773 5533 5655 9503 9503 0.016800513030943875 EFHVRGGL 8 Unmodified _EFHVRGGL_ 0 0 0 REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 457.745776 913.477 0.26042 0.00011921 2.0169 0.00092324 2.2774 0.0010424 457.74649293591654 70.624 0.29836 70.624 70.449 70.747 0 0.13741 0.00029481 NaN 2.5775 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1792900 + 8139 25773 5533 5655 0.016800513030943875 EFHVRGGL 8 Unmodified _EFHVRGGL_ 0 0 0 REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF REV__ENST00000349124.2_1_8:142431921-142431969:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 457.745776 913.477 0.8934 0.00040895 1.5683 0.00071789 2.4617 0.0011268 457.7463440870404 70.363 0.36483 70.398 70.271 70.636 0.035515 -0.087958 -0.0001159 NaN 2.5775 52 16 4 NaN NaN NaN NaN 0 NaN NaN 0 15223000 + 8140 25773 5533 5655 0.016800513030943875 EFIAHCKSNF 10 Unmodified _EFIAHCKSNF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57569146-57569728:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.28271484375 2 598.281866 1194.54918 NaN NaN NaN NaN NaN NaN NaN 68.17 1 68.17 67.67 68.67 0 0 0 0 0.99091 1 38007 38007 1.6526 0 1 8141 1921 5534 5656 9504 9504 -0.040314024055078335 EFILERRMT 9 Unmodified _EFILERRMT_ 0 0 0 nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1 nc|ENSG00000288640|O00458-2|IFRD1 nc|ENSG00000288640|O00458-2|IFRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3228149414062 2 597.818615 1193.62268 0.65676 0.00039262 -0.46905 -0.00028041 0.18771 0.00011222 598.3191059316807 96.227 0.20543 90.051 89.96 90.166 -6.1757 17 12 2 0 0 0 0.14 1 63732 63732 29.082 2.8134 1 8379700 8142 344 5535 5657 9505 9505 0.03361146036968421 EFILIDFF 8 Unmodified _EFILIDFF_ 0 0 0 ENST00000252699.6_1_19:39220957-39221242:+|nuORF ENST00000252699.6_1_19:39220957-39221242:+|nuORF ENST00000252699.6_1_19:39220957-39221242:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7583618164062 2 522.276044 1042.53753 0.67267 0.00035132 0.81275 0.00042448 1.4854 0.0007758 522.7771150305799 74.385 0.28732 74.385 74.252 74.54 0 20 12 2 0 0 0 8.7369 1 41365 41365 5.2307 0 1 576300 8143 11153 5536 5658 9506 9506 0.01796723842812753 EFIRGSTLRF 10 Unmodified _EFIRGSTLRF_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2291564941406 3 409.227779 1224.66151 1.1543 0.00047235 -3.6843 -0.0015077 -2.53 -0.0010353 409.2260432926333 50.237 0.44875 50.188 50.046 50.495 -0.048824 43 21 3 0 0 0 0.2125 1 27145 27145 32.616 24.461 1 3051200 8144 4113 5537 5659 9507 9507 0.05816194662975249 EFIRKMDL 8 Unmodified _EFIRKMDL_ 0 0 0 REV__ENSG00000134201|ENST00000256593|GSTM5;REV__ENST00000492718.1_1_1:110257466-110258024:+|nuORF REV__ENSG00000134201|ENST00000256593|GSTM5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.5485534667969 3 351.191677 1050.5532 0.89711 0.00031506 -3.562 -0.0012509 -2.6649 -0.00093588 351.5249265085149 23.723 0.13808 20.896 20.809 20.948 -2.8273 11 8 2 0 0 0 8.7369 1 12878 12878 6.7232 0.99131 1 1670200 + 8145 19959;27911 5538 5660 9508 9508 0.029946870881985888 EFITVHSML 9 Oxidation (M) _EFITVHSM(Oxidation (M))L_ EFITVHSM(1)L EFITVHSM(57)L 0 0 1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7733764648438 2 546.773342 1091.53213 NaN NaN NaN NaN NaN NaN NaN 51.371 1 51.371 50.871 51.871 0 0 0 0 0.050352 1 28366 28366 57.471 21.427 1 8146 4767 5539 5661 9509 9509 866 -0.009973230113246245 EFIWLHDSF 9 Unmodified _EFIWLHDSF_ 0 0 0 ENSG00000129515|ENST00000362031|SNX6;ENST00000556303.1_1_14:35074800-35099358:-|nuORF ENSG00000129515|ENST00000362031|SNX6 ENSG00000129515|ENST00000362031|SNX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2855224609375 2 597.284931 1192.55531 0.76476 0.00045678 -0.76632 -0.00045771 -0.0015622 -9.3309E-07 597.2849374733903 81.819 0.30716 81.324 81.163 81.471 -0.4952 22 11 3 0 0 0 0.2143 1 44770 44770 21.747 5.8995 1 523880 8147 4145 5540 5662 9510 9510 -0.033265609023374054 EFIWLHDSF 9 Unmodified _EFIWLHDSF_ 0 0 0 ENSG00000129515|ENST00000362031|SNX6;ENST00000556303.1_1_14:35074800-35099358:-|nuORF ENSG00000129515|ENST00000362031|SNX6 ENSG00000129515|ENST00000362031|SNX6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 597.284931 1192.55531 0.74518 0.00044509 1.0905 0.00065131 1.8356 0.0010964 597.2865237315432 81.006 0.1217 81.066 80.992 81.114 0.059929 -0.12901 0.0020462 NaN 21.747 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 549380 8148 4145 5540 5662 -0.033265609023374054 EFKEAFSLF 9 Unmodified _EFKEAFSLF_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF;ENSG00000198336|ENST00000393450|MYL4 ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2823486328125 2 559.281857 1116.54916 0.99986 0.0005592 0.55983 0.0003131 1.5597 0.0008723 559.2822663800359 79.408 0.30251 78.918 78.75 79.053 -0.48933 28 12 3 0 0 0 0.070838 1 43474 43474 39.957 16.809 1 1810600 8149 5567 5541 5663 9511 9511 -0.004450791338740601 EFKQKYDY 8 Unmodified _EFKQKYDY_ 0 0 0 nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L nc|ENSG00000049759|Q96PU5-9|NEDD4L nc|ENSG00000049759|Q96PU5-9|NEDD4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7706298828125 2 560.769114 1119.52368 0.36529 0.00020484 3.9126 0.0021941 4.2779 0.0023989 560.7702282523832 81.144 0.31818 81.144 80.963 81.281 0 19 15 2 0 0 0 0.80143 1 45032 45032 5.7604 1.0044 1 252570 8150 714 5542 5664 9512 9512 -0.0313055365627406 EFKSALLLC 9 Unmodified _EFKSALLLC_ 0 0 0 REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ;REV__ENSG00000135083|ENST00000257536|CCNJL REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.279296875 2 512.280803 1022.54705 0.38478 0.00019712 -2.0662 -0.0010585 -1.6814 -0.00086137 512.2791881516108 83.206 0.254 82.709 82.583 82.837 -0.49751 16 9 2 0 0 0 0.41742 1 45554 45554 11.64 0.81637 1 927090 + 8151 18561;20037 5543 5665 9513 9513 0.036681688566886805 EFKSALLLC 9 Unmodified _EFKSALLLC_ 0 0 0 REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ;REV__ENSG00000135083|ENST00000257536|CCNJL REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.280803 1022.54705 0.38478 0.00019712 -2.0662 -0.0010585 -1.6814 -0.00086137 512.2791881516108 83.206 0.254 82.709 82.583 82.837 -0.49751 0 0 NaN 11.64 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 927090 + 8152 18561;20037 5543 5665 0.036681688566886805 EFLCVLIF 8 Unmodified _EFLCVLIF_ 0 0 0 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2693481445312 2 492.267164 982.519776 NaN NaN NaN NaN NaN NaN NaN 57.123 1 57.123 56.623 57.623 0 0 0 0 0.93587 1 31782 31782 13.508 0 1 + 8153 29586 5544 5666 9514 9514 0.027816853163017186 EFLFHYCGSY 10 Unmodified _EFLFHYCGSY_ 0 0 0 ENSG00000062096|ENST00000381127|ARSF ENSG00000062096|ENST00000381127|ARSF ENSG00000062096|ENST00000381127|ARSF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5147399902344 3 422.514708 1264.5223 0.48049 0.00020302 -1.1406 -0.00048191 -0.66007 -0.00027889 422.5141690168913 26.208 0.27705 23.257 23.112 23.39 -2.9511 44 15 4 0 0 0 0.69377 1 14485 14485 1.7423 0.28716 1 23089000 8154 847 5545 5667 9515 9515 -0.0993851101668497 EFLGKEMKLYF 11 Unmodified _EFLGKEMKLYF_ 0 0 0 nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1 nc|ENSG00000159200|P53805-3|RCAN1 nc|ENSG00000159200|P53805-3|RCAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.9129943847656 3 468.91258 1403.71591 1.1802 0.00055342 -1.8568 -0.00087067 -0.67656 -0.00031725 468.9125180515672 94.219 0.45345 88.043 87.862 88.315 -6.1757 44 26 3 0 0 0 0.46197 1 62405 62405 18.34 10.394 1 19182000 8155 6633 5546 5668 9516 9516 0.030200256995385644 EFLGKEMKLYF 11 Unmodified _EFLGKEMKLYF_ 0 0 0 nc|ENSG00000159200|P53805-3|RCAN1;nc|ENSG00000159200|P53805-2|RCAN1;ENSG00000159200|ENST00000313806|RCAN1 nc|ENSG00000159200|P53805-3|RCAN1 nc|ENSG00000159200|P53805-3|RCAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 703.3702392578125 2 702.865231 1403.71591 0.88351 0.00062099 1.9091 0.0013419 2.7926 0.0019628 703.3674624460285 94.213 0.1419 88.037 87.993 88.135 -6.1757 14 7 3 0 0 0 0.016248 1 62420 62420 64.927 32.141 1 7151000 8156 6633 5546 5668 9517 9517 0.030200256995385644 EFLKFRKSF 9 Unmodified _EFLKFRKSF_ 0 0 0 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 MSMS AL20221201_MKP_PDAC_01 4 401.2304992675781 3 401.229119 1200.66553 NaN NaN NaN NaN NaN NaN NaN 38.607 1 34.238 33.738 34.738 -4.3689 0 0 0 0.6557 1 22796 22796 7.1017 0 1 8157 16503 5547 5669 9518 9518 0.07322284156703063 EFLKSDLIQF 10 Unmodified _EFLKSDLIQF_ 0 0 0 REV__ENSG00000064763|ENST00000536681|FAR2 REV__ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.3353881835938 2 620.334621 1238.65469 2.4424 0.0015151 -1.3388 -0.00083053 1.1036 0.00068458 620.3339252159581 95.781 0.21294 95.785 95.679 95.892 0.004158 12 7 2 0 0 0 0.56348 1 53245 53245 13.042 7.3106 1 1145400 + 8158 17361 5548 5670 9519 9519 0.044908369917493474 EFLKYFGTF 9 Unmodified _EFLKYFGTF_ 0 0 0 ENSG00000107020|ENST00000223864|PLGRKT ENSG00000107020|ENST00000223864|PLGRKT ENSG00000107020|ENST00000223864|PLGRKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2913818359375 2 576.292225 1150.5699 0.5988 0.00034508 0.36766 0.00021188 0.96646 0.00055697 576.2912121385386 78.875 0.45082 78.93 78.707 79.158 0.054977 39 17 3 0 0 0 0.028475 1 43549 43549 56.177 20.133 1 4174100 8159 2470 5549 5671 9520 9520 0.0006351124579850875 EFLLTHPVL 9 Unmodified _EFLLTHPVL_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8087768554688 2 534.808042 1067.60153 0.65848 0.00035216 -0.22027 -0.0001178 0.43822 0.00023436 534.8079666524726 74.268 0.27371 73.792 73.613 73.887 -0.47588 23 10 3 0 0 0 0.087258 1 40631 40631 36.044 24.404 1 963460 8160 635 5550 5672 9521 9521 0.07043503999739187 EFLNCLVKI 9 Unmodified _EFLNCLVKI_ 0 0 0 REV__MOGAT2|p.E311V|1|0.2|ENSG00000166391|chr11:75731213-75731213|A/T|missense_variant REV__MOGAT2|p.E311V|1|0.2|ENSG00000166391|chr11:75731213-75731213|A/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8050537109375 2 539.801903 1077.58925 -0.042728 -2.3065E-05 -1.9031 -0.0010273 -1.9458 -0.0010504 539.8006430307246 54.164 0.32214 54.097 53.921 54.243 -0.066936 40 15 4 0 0 0 0.23158 1 29373 29373 20.454 4.6064 1 4460800 + 8161 29472 5551 5673 9522 9522 0.05356144265056173 EFLPDLQAML 10 Unmodified _EFLPDLQAML_ 0 0 0 REV__ENST00000421582.2_2_9:35660480-35660645:+|nuORF REV__ENST00000421582.2_2_9:35660480-35660645:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5375061035156 3 392.870492 1175.58965 -0.38944 -0.000153 3.1796 0.0012492 2.7902 0.0010962 392.87234069330816 23.952 0.32768 23.952 23.791 24.119 0 50 15 5 0 0 0 0.70734 1 12288 12288 2.086 1.0145 1 3889200 + 8162 21504 5552 5674 9523 9523 0.008875191942479432 EFLPFHFLL 9 Unmodified _EFLPFHFLL_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8181762695312 2 581.81841 1161.62227 1.3243 0.0007705 -1.1782 -0.00068549 0.14612 8.5016E-05 581.8173390801703 100.65 0.091675 100.6 100.53 100.63 -0.04216 12 3 5 0 0 0 0.12424 1 55921 55921 34.187 13.734 1 17811000 8163 10595 5553 5675 9524 9524 0.04792094379422451 EFLPFHFLL 9 Unmodified _EFLPFHFLL_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8189697265625 2 581.81841 1161.62227 0.83146 0.00048376 1.0635 0.00061876 1.895 0.0011025 581.8187640828789 101.5 0.1209 95.32 95.252 95.373 -6.1757 13 5 3 0 0 0 0.08691 1 68107 68107 40.449 25.61 1 45083000 8164 10595 5553 5675 9525 9525 0.04792094379422451 EFLQQSPVPVK 11 Unmodified _EFLQQSPVPVK_ 0 0 0 REV__nc|ENSG00000100330|Q13615-3|MTMR3 REV__nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3531494140625 2 636.353345 1270.69214 3.2092 0.0020422 -1.3686 -0.00087091 1.8407 0.0011713 636.3525607666372 99.821 1.4853 99.784 98.369 99.855 -0.036301 125 54 3 0 0 0 0.48615 1 55462 55462 17.113 4.8722 1 56253000 + 8165 18044 5554 5676 9526 9526 0.06761928257355976 EFLRDQPQF 9 Unmodified _EFLRDQPQF_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A nc|ENSG00000179262|P54725-2|RAD23A nc|ENSG00000179262|P54725-2|RAD23A MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2941284179688 2 590.293288 1178.57202 0.63495 0.00037481 -0.67686 -0.00039955 -0.04191 -2.4739E-05 590.2928485544332 56.485 0.39896 50.508 50.25 50.649 -5.9769 40 22 3 0 0 0 0.0086209 1 36014 36014 89.401 61.772 1 30163000 8166 8821 5555 5677 9527 9527 -0.010120600164100324 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8065185546875 2 542.8055 1083.59645 -0.21161 -0.00011487 1.2831 0.00069645 1.0715 0.00058159 542.80600904099 38.766 0.24804 38.479 38.382 38.63 -0.28687 31 11 4 0 0 0 0.082934 1 20399 20399 26.268 10.421 1 6771400 8167 1876;10904 5556 5678 9528 9528 0.05799200137130356 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2061767578125 3 362.206092 1083.59645 -0.023768 -8.609E-06 0.6197 0.00022446 0.59593 0.00021585 362.20627223700836 38.793 0.23181 38.506 38.398 38.63 -0.28687 34 10 4 0 0 0 0.082934 1 20403 20403 37.075 20.509 1 18328000 8168 1876;10904 5556 5678 9529 9529 0.05799200137130356 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.20654296875 3 362.206092 1083.59645 0.016818 6.0915E-06 0.26975 9.7705E-05 0.28657 0.0001038 362.20612078271546 38.347 0.26471 38.364 38.239 38.503 0.01704 21 11 2 0 0 0 0.053952 1 20376 20376 43.982 32.487 1 8520700 8169 1876;10904 5556 5678 9530 9530 0.05799200137130356 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8056640625 2 542.8055 1083.59645 0.093506 5.0756E-05 -0.39631 -0.00021512 -0.30281 -0.00016437 542.8052077534934 38.341 0.1951 38.358 38.265 38.46 0.01704 21 8 3 0 0 0 0.0083595 1 20383 20383 76.825 34.73 1 5013700 8170 1876;10904 5556 5678 9531 9531 0.05799200137130356 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8057250976562 2 542.8055 1083.59645 0.56724 0.0003079 -0.30142 -0.00016361 0.26581 0.00014429 542.8050027010544 43.118 0.33261 38.353 38.18 38.513 -4.7648 48 22 3 0 0 0 0.0039769 2 26217 26075;26217 121.53 65.357 1 56752000 8171 1876;10904 5556 5678 9532;9533 9533 0.05799200137130356 EFLTKTAKF 9 Unmodified _EFLTKTAKF_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;ENST00000554574.1_1_14:91942052-91948315:-|nuORF;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2067565917969 3 362.206092 1083.59645 1.3566 0.00049136 0.18823 6.8178E-05 1.5448 0.00055953 362.2061356602543 43.139 0.41427 38.374 38.111 38.525 -4.7648 83 27 4 0 0 0 0.12357 1 26091 26091 30.703 30.703 1 99377000 8172 1876;10904 5556 5678 9534 9534 0.05799200137130356 EFMFLKKY 8 Unmodified _EFMFLKKY_ 0 0 0 REV__ENSG00000154309|ENST00000675850|DISP1 REV__ENSG00000154309|ENST00000675850|DISP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7960815429688 2 553.291171 1104.56779 0.40841 0.00022597 -1.8844 -0.0010426 -1.476 -0.00081667 553.2902951713114 48.62 0.49175 48.576 48.261 48.753 -0.04369 84 24 5 0 0 0 0.72953 1 26089 26089 14.582 2.9414 1 29415000 + 8173 21223 5557 5679 9535 9535 0.019687592363652584 EFMQHSETF 9 Unmodified _EFMQHSETF_ 0 0 0 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.243408203125 2 578.242406 1154.47026 0.57176 0.00033062 3.546 0.0020504 4.1177 0.0023811 578.2445277744047 84.2 0.2692 83.701 83.572 83.841 -0.49961 23 11 3 0 0 0 0.54444 1 46062 46062 4.756 0.42677 1 722020 8174 1147 5558 5680 9536 9536 -0.10079674430448904 EFMTPRKLSF 10 Unmodified _EFMTPRKLSF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2232055664062 3 419.221636 1254.64308 NaN NaN NaN NaN NaN NaN NaN 52.306 1 52.247 51.747 52.747 -0.058918 0 0 0 0.66657 1 28334 28334 15.739 11.023 1 8175 5208 5559 5681 9537 9537 0.02594316696763599 EFMTPRKLSF 10 Oxidation (M) _EFM(Oxidation (M))TPRKLSF_ EFM(1)TPRKLSF EFM(43)TPRKLSF 0 0 1 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MSMS AL20221201_MKP_PDAC_01 4 424.5542907714844 3 424.553274 1270.63799 NaN NaN NaN NaN NaN NaN NaN 51.405 1 45.756 45.256 46.256 -5.649 0 0 0 0.20306 1 32345 32345 42.835 32.52 1 8176 5208 5559 5682 9538 9538 955 0.01350012834154768 EFNCQSPQITF 11 Unmodified _EFNCQSPQITF_ 0 0 0 PXDNL|p.R235Q|2|0.1|ENSG00000147485|chr8:51472295-51472295|C/T|missense_variant PXDNL|p.R235Q|2|0.1|ENSG00000147485|chr8:51472295-51472295|C/T|missense_variant PXDNL|p.R235Q|2|0.1|ENSG00000147485|chr8:51472295-51472295|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.797607421875 2 657.29517 1312.57579 0.68501 0.00045025 0.079488 5.2247E-05 0.7645 0.0005025 657.2951760157151 72.797 0.30795 72.321 72.189 72.497 -0.47588 26 13 2 0 0 0 0.65846 1 39814 39814 8.1555 1.9497 1 1347400 8177 16697 5560 5683 9539 9539 -0.06799758304850911 EFNYFLYF 8 Unmodified _EFNYFLYF_ 0 0 0 REV__ENSG00000102805|ENST00000377453|CLN5 REV__ENSG00000102805|ENST00000377453|CLN5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7622680664062 2 571.7633 1141.51205 NaN NaN NaN NaN NaN NaN NaN 81.692 1 81.692 81.192 82.192 0 0 0 0 0.97444 1 45336 45336 2.5775 0.51773 1 + 8178 18258 5561 5684 9540 9540 -0.053047506796247035 EFPAACGA 8 Unmodified _EFPAACGA_ 0 0 0 ENST00000395900.1_1_11:32457375-32459526:+|nuORF ENST00000395900.1_1_11:32457375-32459526:+|nuORF ENST00000395900.1_1_11:32457375-32459526:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.164794921875 2 383.165439 764.316325 NaN NaN NaN NaN NaN NaN NaN 20.605 1 20.605 20.105 21.105 0 0 0 0 0.97444 1 10377 10377 2.5775 0 1 8179 12781 5562 5685 9541 9541 -0.07526039405320262 EFPDKGFFFAF 11 Unmodified _EFPDKGFFFAF_ 0 0 0 ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A;ENST00000460991.1_1_2:85066267-85069119:-|nuORF ENSG00000186854|ENST00000409520|TRABD2A ENSG00000186854|ENST00000409520|TRABD2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 676.3240356445312 2 676.321514 1350.62847 4.5307 0.0030642 -1.4794 -0.0010006 3.0513 0.0020637 676.3205453139757 99.053 0.24574 99.025 98.891 99.137 -0.028282 17 8 3 0 0 0 0.42951 1 55020 55020 31.268 23.659 1 2365700 8180 9512 5563 5686 9542 9542 -0.03281432179710464 EFPDKVFAEKW 11 Unmodified _EFPDKVFAEKW_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000483608.1_1_2:148705613-148710070:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.903076171875 3 465.902961 1394.68705 -0.25482 -0.00011872 0.30116 0.00014031 0.046334 2.1587E-05 465.90284770307386 60.773 0.32488 60.284 60.11 60.435 -0.48932 31 15 3 0 0 0 0.45445 1 33072 33072 15.467 14.011 1 5348100 8181 3178 5564 5687 9543 9543 0.005496243947391122 EFPEIGAKGF 10 Unmodified _EFPEIGAKGF_ 0 0 0 ENST00000545315.1_1_15:83331329-83331932:-|nuORF ENST00000545315.1_1_15:83331329-83331932:-|nuORF ENST00000545315.1_1_15:83331329-83331932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7813110351562 2 547.779482 1093.54441 0.4375 0.00023965 3.6658 0.002008 4.1033 0.0022477 547.7797464751982 83.725 0.50629 83.228 82.914 83.421 -0.49751 58 20 4 0 0 0 0.69064 1 45927 45927 3.9444 0.3479 1 2970000 8182 15089 5565 5688 9544 9544 0.0013803672338781325 EFPHREFL 8 Unmodified _EFPHREFL_ 0 0 0 REV__ENST00000463554.5_1_2:233635855-233636008:+|nuORF REV__ENST00000463554.5_1_2:233635855-233636008:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7716674804688 2 537.771991 1073.52943 0.25846 0.00013899 -0.76235 -0.00040997 -0.50388 -0.00027097 537.7716446732746 79.581 0.40347 79.581 79.372 79.775 0 39 16 3 0 0 0 0.80221 1 44256 44256 7.2892 4.4 1 1339300 + 8183 27353 5566 5689 9545 9545 -0.004394103539425487 EFPPGTPRF 9 Unmodified _EFPPGTPRF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2666015625 2 524.266542 1046.51853 0.30691 0.0001609 -0.2889 -0.00015146 0.018012 9.4431E-06 524.2663677371787 53.674 1.9136 53.222 52.005 53.918 -0.45173 150 96 3 0 0 0 0.011968 6 29104 28503;28883;28989;29104;29210;29323 74.929 36.778 1 3375500 8184 10766 5567 5690 9546;9547;9548;9549;9550;9551 9549 -0.0028681272824542248 EFPPGTPRF 9 Unmodified _EFPPGTPRF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.267333984375 2 524.266542 1046.51853 0.41352 0.00021679 -0.27438 -0.00014385 0.13914 7.2949E-05 524.2667073336772 53.071 0.97943 53.007 52.305 53.284 -0.063423 62 48 2 0 0 0 0.1685 2 28736 28736;28907 26.268 14.628 1 1511400 8185 10766 5567 5690 9552;9553 9552 -0.0028681272824542248 EFPPGTPRF 9 Unmodified _EFPPGTPRF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.26513671875 2 524.266542 1046.51853 1.0355 0.00054286 0.34499 0.00018087 1.3804 0.00072372 524.2661431229249 60.173 0.63075 54.058 53.814 54.445 -6.1147 43 32 2 0 0 0 0.07087 1 38655 38655 39.95 15.929 1 18473000 8186 10766 5567 5690 9554 9554 -0.0028681272824542248 EFPPGTPRF 9 Unmodified _EFPPGTPRF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 524.264892578125 2 524.266542 1046.51853 NaN NaN NaN NaN NaN NaN NaN 58.958 1 52.884 52.384 53.384 -6.0745 0 0 0 0.098163 1 37810 37810 43.858 5.7071 1 8187 10766 5567 5690 9555 9555 -0.0028681272824542248 EFPPGTPRF 9 Unmodified _EFPPGTPRF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.2862548828125 2 524.266542 1046.51853 0.95675 0.00050159 -2.1775 -0.0011416 -1.2207 -0.00063999 524.2653541844437 59.465 0.62616 53.35 53.17 53.796 -6.1147 58 35 4 0 0 0 0.17331 1 38344 38344 22.736 4.6013 1 36261000 8188 10766 5567 5690 9556 9556 -0.0028681272824542248 EFQGFSQFLL 10 Unmodified _EFQGFSQFLL_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3059692382812 2 608.305864 1214.59717 0.42894 0.00026093 -0.22262 -0.00013542 0.20632 0.00012551 608.3056325182056 92.9 0.91484 92.443 92.109 93.023 -0.4574 140 44 4 0 0 0 0.18021 4 50834 50637;50731;50834;50937 36.127 29.082 1 9893600 8189 4794 5568 5691 9557;9558;9559;9560 9559 -0.0015400521381252474 EFQGFSQFLL 10 Unmodified _EFQGFSQFLL_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3064575195312 2 608.305864 1214.59717 1.5329 0.00093248 -0.46773 -0.00028452 1.0652 0.00064795 608.3053618713849 92.34 0.76141 92.37 91.993 92.755 0.03019 72 28 3 0 0 0 0.27276 1 51371 51371 29.082 4.0906 1 8872700 8190 4794 5568 5691 9561 9561 -0.0015400521381252474 EFQKEFYKL 9 Unmodified _EFQKEFYKL_ 0 0 0 REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF REV__ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.218017578125 3 411.216768 1230.62847 NaN NaN NaN NaN NaN NaN NaN 68.74 1 62.565 62.065 63.065 -6.1757 0 0 0 0.6306 1 44883 44883 7.609 0 1 + 8191 20909 5569 5692 9562 9562 0.02238567820290882 EFQLWQLLLWE 11 Unmodified _EFQLWQLLLWE_ 0 0 0 ENST00000297632.7_2_8:125334358-125339602:-|nuORF ENST00000297632.7_2_8:125334358-125339602:-|nuORF ENST00000297632.7_2_8:125334358-125339602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2660827636719 3 502.26601 1503.7762 0.015754 7.9129E-06 0.47284 0.00023749 0.48859 0.0002454 502.2661667449155 37.968 0.41916 37.985 37.731 38.151 0.01704 29 19 3 0 0 0 0.72131 1 20191 20191 2.2527 0.92309 1 2501900 8192 11526 5570 5693 9563 9563 0.044464593542898 EFQPGDVMF 9 Unmodified _EFQPGDVMF_ 0 0 0 ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2366943359375 2 535.236593 1068.45863 1.0887 0.00058273 -0.59619 -0.0003191 0.49256 0.00026363 535.2358838862725 89.117 0.42739 82.941 82.669 83.096 -6.1757 43 23 2 0 0 0 0.19127 1 58718 58718 24.021 1.2843 1 19158000 8193 1456 5571 5694 9564 9564 -0.07285871453791515 EFRGQFYHF 9 Unmodified _EFRGQFYHF_ 0 0 0 REV__ENSG00000223601|ENST00000422359|EBLN1 REV__ENSG00000223601|ENST00000422359|EBLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7882080078125 2 615.788173 1229.56179 0.4007 0.00024675 1.2392 0.0007631 1.6399 0.0010098 615.788504809523 85.516 0.4062 85.516 85.317 85.723 0 40 16 3 0 0 0 0.59532 1 47431 47431 1.6526 0 1 959720 + 8194 24373 5572 5695 9565 9565 -0.04380622950975521 EFRIKYVGAIE 11 Unmodified _EFRIKYVGAIE_ 0 0 0 ENST00000497031.5_1_2:9546965-9563520:-|nuORF;nc|ENSG00000119185|O14713-2|ITGB1BP1;ENST00000490426.5_1_2:9546965-9563580:-|nuORF;ENSG00000119185|ENST00000355346|ITGB1BP1 ENST00000497031.5_1_2:9546965-9563520:-|nuORF ENST00000497031.5_1_2:9546965-9563520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2459716796875 3 442.246839 1323.71869 0.17429 7.708E-05 0.83935 0.0003712 1.0136 0.00044828 442.2472538678949 44.771 0.16101 44.749 44.637 44.798 -0.022064 13 7 2 0 0 0 0.53952 1 24012 24012 8.2864 1.663 1 13626000 8195 3416 5573 5696 9566 9566 0.06977617148731952 EFRQYKRTYYM 11 Unmodified _EFRQYKRTYYM_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.9251708984375 3 528.925771 1583.75548 NaN NaN NaN NaN NaN NaN NaN 35.816 1 35.816 35.316 36.316 0 0 0 0 0.94002 1 18956 18956 1.0136 0.55906 1 8196 3021 5574 5697 9567 9567 -0.01304454297041957 EFRQYKRTYYM 11 Unmodified _EFRQYKRTYYM_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.9259643554688 3 528.925771 1583.75548 -0.58121 -0.00030742 0.56776 0.0003003 -0.013447 -7.1127E-06 528.92611216328 36.249 0.36841 35.999 35.825 36.193 -0.2497 48 16 5 0 0 0 0.7326 1 19096 19096 1.2148 1.1416 1 7581500 8197 3021 5574 5697 9568 9568 -0.01304454297041957 EFRRIHFQNYR 11 Unmodified _EFRRIHFQNYR_ 0 0 0 REV__ENSG00000198001|ENST00000613694|IRAK4 REV__ENSG00000198001|ENST00000613694|IRAK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.4099731445312 2 783.40784 1564.80113 NaN NaN NaN NaN NaN NaN NaN 99.22 1 99.192 98.692 99.692 -0.028282 0 0 0 0.94011 1 55107 55107 5.2969 4.1035 1 + 8198 23978 5575 5698 9569 9569 0.04131952000216188 EFRRIHFQNYR 11 Unmodified _EFRRIHFQNYR_ 0 0 0 REV__ENSG00000198001|ENST00000613694|IRAK4 REV__ENSG00000198001|ENST00000613694|IRAK4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.4099731445312 2 783.40784 1564.80113 4.5029 0.0035276 -0.94726 -0.00074209 3.5557 0.0027855 783.4081966975252 99.189 0.1389 99.161 99.077 99.216 -0.028282 10 4 3 0 0 0 0.30217 1 55107 55107 5.2969 4.1035 1 1768900 + 8199 23978 5575 5698 9570 9570 0.04131952000216188 EFRRWRQRRRR 11 Unmodified _EFRRWRQRRRR_ 0 0 0 REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4876708984375 2 851.490896 1700.96724 NaN NaN NaN NaN NaN NaN NaN 88.107 1 88.107 87.607 88.607 0 0 0 0 0.9435 1 48775 48775 0 0 1 + 8200 28338 5576 5699 9571 9571 0.14479443019399696 EFRRWRQRRRR 11 Unmodified _EFRRWRQRRRR_ 0 0 0 REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 851.4896240234375 2 851.490896 1700.96724 NaN NaN NaN NaN NaN NaN NaN 87.975 1 88.028 87.528 88.528 0.053352 0 0 0 0.9435 1 48933 48933 0 0 1 + 8201 28338 5576 5699 9572 9572 0.14479443019399696 EFRRWRQRRRR 11 Unmodified _EFRRWRQRRRR_ 0 0 0 REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 851.6304321289062 2 851.490896 1700.96724 NaN NaN NaN NaN NaN NaN NaN 92.771 1 92.801 92.301 93.301 0.030197 0 0 0 0.9435 1 51587 51587 0 0 1 + 8202 28338 5576 5699 9573 9573 0.14479443019399696 EFRRWRQRRRR 11 Unmodified _EFRRWRQRRRR_ 0 0 0 REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF REV__ENST00000525786.1_1_11:96120692-96123066:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 851.4891967773438 2 851.490896 1700.96724 NaN NaN NaN NaN NaN NaN NaN 60.814 1 54.666 54.166 55.166 -6.1478 0 0 0 0.9435 1 39139 39139 0 0 1 + 8203 28338 5576 5699 9574 9574 0.14479443019399696 EFRTEQCPLF 10 Unmodified _EFRTEQCPLF_ 0 0 0 ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL;ENSG00000132478|ENST00000589666|UNK ENST00000503648.1_1_16:1451355-1464692:-|nuORF ENST00000503648.1_1_16:1451355-1464692:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.300048828125 2 635.300255 1268.58596 0.96271 0.00061161 0.31401 0.00019949 1.2767 0.0008111 635.3009780658011 95.273 0.308 89.097 88.872 89.18 -6.1757 23 16 2 0 0 0 0.46514 1 63092 63092 18.146 1.0335 1 5808800 8204 812 5577 5700 9575 9575 -0.03759150579617199 EFSDKKLHV 9 Unmodified _EFSDKKLHV_ 0 0 0 ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1 ENST00000579014.5_1_18:6942080-7042306:-|nuORF ENST00000579014.5_1_18:6942080-7042306:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2002868652344 3 368.201229 1101.58186 NaN NaN NaN NaN NaN NaN NaN 15.947 1 15.933 15.433 16.433 -0.014067 0 0 0 0.85737 1 7849 7849 0.26902 0 1 8205 1986 5578 5701 9576 9576 0.035131279889810685 EFSEIKETW 9 Unmodified _EFSEIKETW_ 0 0 0 ENSG00000147100|ENST00000587091|SLC16A2 ENSG00000147100|ENST00000587091|SLC16A2 ENSG00000147100|ENST00000587091|SLC16A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.2909545898438 2 584.779679 1167.5448 1.1083 0.00064813 3.5094 0.0020522 4.6177 0.0027004 584.7813632088616 81.616 0.17383 75.441 75.288 75.462 -6.1757 13 9 2 0 0 0 0.18521 1 53526 53526 11.64 4.9171 1 17454000 8206 5819 5579 5702 9577 9577 -0.0322658834743379 EFSENVMVL 9 Unmodified _EFSENVMVL_ 0 0 0 REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.755615234375 2 534.257525 1066.5005 0.38331 0.00020479 -2.0201 -0.0010793 -1.6368 -0.00087448 534.2573842301423 49.09 0.58578 49.09 48.808 49.393 0 76 28 3 0 0 0 0.25681 1 26895 26895 19.257 4.4187 1 45194000 + 8207 23689 5580 5703 9578 9578 -0.0300931576525727 EFSFNPDL 8 Unmodified _EFSFNPDL_ 0 0 0 REV__ENSG00000103257|ENST00000261622|SLC7A5 REV__ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7219543457031 2 484.721633 967.428712 0.064821 3.142E-05 0.77283 0.00037461 0.83765 0.00040603 484.72187469651305 70.388 0.31501 70.388 70.227 70.542 0 22 12 2 0 0 0 0.80143 1 39205 39205 5.7604 0.52976 1 918570 + 8208 18296 5581 5704 9579 9579 -0.05630487127473316 EFSFNPDL 8 Unmodified _EFSFNPDL_ 0 0 0 REV__ENSG00000103257|ENST00000261622|SLC7A5 REV__ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 484.721633 967.428712 0.064821 3.142E-05 0.77283 0.00037461 0.83765 0.00040603 484.72187469651305 70.388 0.31501 70.388 70.227 70.542 0 0 0 NaN 5.7604 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 918570 + 8209 18296 5581 5704 -0.05630487127473316 EFSIANVFN 9 Unmodified _EFSIANVFN_ 0 0 0 REV__ENSG00000171492|ENST00000337338|LRRC8D REV__ENSG00000171492|ENST00000337338|LRRC8D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7561645507812 2 520.756007 1039.49746 -0.12479 -6.4987E-05 1.7097 0.00089033 1.5849 0.00082534 520.7564181972117 87.48 0.22812 87.533 87.492 87.72 0.053352 15 10 2 0 0 0 0.2143 1 48666 48666 21.747 0.87544 1 16315000 + 8210 22566 5582 5705 9580 9580 -0.020708228277499074 EFSKKDAGIY 10 Unmodified _EFSKKDAGIY_ 0 0 0 nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.296630859375 2 579.295496 1156.57644 0.28616 0.00016577 -0.52065 -0.00030161 -0.23449 -0.00013584 579.2949815577269 42.167 0.27125 42.167 42.068 42.339 0 22 13 2 0 0 0 0.44373 1 22823 22823 19.257 2.3147 1 5894100 8211 1981 5583 5706 9581 9581 0.004414044065242706 EFSQFLSEF 9 Unmodified _EFSQFLSEF_ 0 0 0 REV__nc|ENSG00000204977|O60858-3|TRIM13 REV__nc|ENSG00000204977|O60858-3|TRIM13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2614135742188 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 89.478 1 88.976 88.476 89.476 -0.50171 0 0 0 0.7243 1 48921 48921 8.5933 0.68312 1 + 8212 24209 5584 5707 9582 9582 -0.053262598931723915 EFSSALFEL 9 Unmodified _EFSSALFEL_ 0 0 0 REV__ENSG00000241945|ENST00000291576|PWP2 REV__ENSG00000241945|ENST00000291576|PWP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7610473632812 2 521.758215 1041.50188 0.41283 0.0002154 0.0036155 1.8864E-06 0.41645 0.00021728 521.7581658493875 81.879 0.44996 81.879 81.66 82.11 0 82 24 4 0 0 0 0.49272 1 45342 45342 7.9102 2.1497 1 14992000 + 8213 24455 5585 5708 9583 9583 -0.01721358404847706 EFSSFHLEF 9 Unmodified _EFSSFHLEF_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7625732421875 2 571.761289 1141.50803 0.80099 0.00045797 0.39038 0.0002232 1.1914 0.00068118 571.7613983917629 82.256 0.51851 81.761 81.471 81.989 -0.4952 35 20 2 0 0 0 0.54444 1 44991 44991 4.756 0 1 535310 + 8214 19319 5586 5709 9584 9584 -0.057068401733204155 EFSSFHLEF 9 Unmodified _EFSSFHLEF_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.761289 1141.50803 0.80099 0.00045797 0.39038 0.0002232 1.1914 0.00068118 571.7613983917629 82.256 0.51851 81.761 81.471 81.989 -0.4952 0 0 NaN 4.756 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 535310 + 8215 19319 5586 5709 -0.057068401733204155 EFSSGIVY 8 Unmodified _EFSSGIVY_ 0 0 0 CATSPERB-ATXN3|2|fusion;CATSPERB-ATXN3|5|fusion;CATSPERB-ATXN3|4|fusion;CATSPERB-ATXN3|1|fusion;CATSPERB-ATXN3|3|fusion;CATSPERB-ATXN3|6|fusion;ENSG00000133962|ENST00000256343|CATSPERB CATSPERB-ATXN3|2|fusion;ENSG00000133962|ENST00000256343|CATSPERB CATSPERB-ATXN3|2|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.886474609375 2 451.218726 900.422899 NaN NaN NaN NaN NaN NaN NaN 53.257 1 53.193 52.693 53.693 -0.063423 0 0 0 0.97444 1 28879 28879 2.8892 0 1 8216 50;4545 5587 5710 9585 9585 -0.031295856391238885 EFSSWGGNDEE 11 Unmodified _EFSSWGGNDEE_ 0 0 0 REV__ENST00000519594.5_1_5:169697651-169724717:-|nuORF REV__ENST00000519594.5_1_5:169697651-169724717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.4950256347656 3 419.494918 1255.46293 -0.65574 -0.00027508 0.30227 0.0001268 -0.35346 -0.00014828 419.4951443298292 33.16 0.23774 33.16 33.068 33.306 0 21 11 3 0 0 0 0.71938 1 17374 17374 2.4348 0.52841 1 1952500 + 8217 17213 5588 5711 9586 9586 -0.15458735497145426 EFSWMFSY 8 Unmodified _EFSWMFSY_ 0 0 0 REV__ENSG00000180921|ENST00000388913|FAM83H REV__ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1546020507812 3 366.152999 1095.43717 -0.83421 -0.00030545 1.8905 0.00069223 1.0563 0.00038678 366.1548231617168 77.961 0.51961 77.478 77.215 77.735 -0.4826 150 36 5 0 0 0 0.80447 1 42722 42722 3.9444 0 1 18877000 + 8218 23176 5589 5712 9587 9587 -0.10673256482505167 EFSYSEEDTF 10 Unmodified _EFSYSEEDTF_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2472534179688 2 627.245866 1252.47718 0.57842 0.00036281 1.6135 0.0010121 2.192 0.0013749 627.2472624310368 73.762 0.33164 73.762 73.591 73.922 0 36 13 4 0 0 0 0.69377 1 41025 41025 3.5965 0.31518 1 1239800 + 8219 22789 5590 5713 9588 9588 -0.13896083068902954 EFSYSEEDTF 10 Unmodified _EFSYSEEDTF_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 627.245866 1252.47718 0.57842 0.00036281 1.6135 0.0010121 2.192 0.0013749 627.2472624310368 73.762 0.33164 73.762 73.591 73.922 0 -0.017231 0.00025527 NaN 3.5965 36 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1239800 + 8220 22789 5590 5713 -0.13896083068902954 EFSYSEEDTF 10 Unmodified _EFSYSEEDTF_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.245866 1252.47718 0.54782 0.00034362 0.34315 0.00021524 0.89096 0.00055885 627.2459551242259 74.273 0.24306 73.797 73.667 73.91 -0.47588 0.017231 -0.0013384 NaN 3.5965 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 582860 + 8221 22789 5590 5713 -0.13896083068902954 EFTDAKHESLF 11 Unmodified _EFTDAKHESLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.3157958984375 2 662.314417 1322.61428 0.53151 0.00035203 2.7245 0.0018045 3.256 0.0021565 662.3162794297042 84.083 0.2442 83.583 83.485 83.729 -0.49961 16 10 2 0 0 0 0.71036 1 46013 46013 3.2813 0 1 925840 8222 3322 5591 5714 9589 9589 -0.03412129398680008 EFTDPTYDMF 10 Unmodified _EFTDPTYDMF_ 0 0 0 ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2 ENSG00000173068|ENST00000380672|BNC2 ENSG00000173068|ENST00000380672|BNC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.8387451171875 3 422.505878 1264.49581 NaN NaN NaN NaN NaN NaN NaN 40.818 1 40.818 40.318 41.318 0 0 0 0 0.92825 1 21967 21967 3.5871 0 1 8223 8284 5592 5715 9590 9590 -0.12586244698695737 EFTKKFSEW 9 Unmodified _EFTKKFSEW_ 0 0 0 ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2979125976562 2 601.298039 1200.58152 0.014565 8.7578E-06 0.013144 7.9032E-06 0.027708 1.6661E-05 601.2981831735838 67.516 0.45513 61.341 61.091 61.546 -6.1757 56 25 3 0 0 0 0.10734 1 44044 44044 32.305 3.2239 1 30339000 8224 3023 5593 5716 9591 9591 -0.010742917308789401 EFTKRMISP 9 Unmodified _EFTKRMISP_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.7691650390625 2 554.794609 1107.57467 0.83301 0.00046215 -2.1725 -0.0012053 -1.3395 -0.00074315 554.7933522900059 67.319 0.42323 61.144 60.962 61.385 -6.1757 37 23 2 0 0 0 0.17331 1 43747 43747 12.241 4.3305 1 18090000 + 8225 18580 5594 5717 9592 9592 0.025180721169363096 EFTLYSGPY 9 Unmodified _EFTLYSGPY_ 0 0 0 REV__ENSG00000122121|ENST00000371106|XPNPEP2 REV__ENSG00000122121|ENST00000371106|XPNPEP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7508544921875 2 538.75039 1075.48623 NaN NaN NaN NaN NaN NaN NaN 59.491 1 59.491 58.991 59.991 0 0 0 0 0.33856 1 33149 33149 23.148 6.2061 1 + 8226 19328 5595 5718 9593 9593 -0.04849644921910112 EFTSKPWHWP 10 Unmodified _EFTSKPWHWP_ 0 0 0 ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2 ENST00000452340.7_1_14:77746025-77787024:-|nuORF ENST00000452340.7_1_14:77746025-77787024:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2163696289062 3 438.880379 1313.61931 NaN NaN NaN NaN NaN NaN NaN 0.047234 1 0.025169 -0.47483 0.52517 -0.022065 0 0 0 1.0019 1 24 24 0.15932 0 1 8227 407 5596 5719 9594 9594 -0.024957807454029535 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2854614257812 2 524.284734 1046.55492 0.29264 0.00015343 -0.75654 -0.00039664 -0.4639 -0.00024322 524.2841803697517 44.101 0.20987 44.101 44.036 44.246 0 15 10 2 0 0 0 0.019303 1 24000 24000 64.236 41.088 1 6598500 8228 4258 5597 5720 9595 9595 0.03350064168466815 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2853393554688 2 524.284734 1046.55492 -0.24597 -0.00012896 0.1433 7.513E-05 -0.10267 -5.3828E-05 524.2848222968761 44.291 0.20706 43.975 43.88 44.087 -0.31585 35 15 3 0 0 0 0.0082661 1 23596 23596 92.491 48.084 1 87331000 8229 4258 5597 5720 9596 9596 0.03350064168466815 EFVAKGHLF 9 Unmodified _EFVAKGHLF_ 0 0 0 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 ENSG00000130772|ENST00000373842|MED18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2846069335938 2 524.284734 1046.55492 0.7087 0.00037156 0.26675 0.00013985 0.97545 0.00051141 524.2850138333387 49.112 0.42836 43.716 43.49 43.918 -5.3961 72 28 3 0 0 0 0.0082661 2 30714 30574;30714 92.491 48.084 1 202520000 8230 4258 5597 5720 9597;9598 9598 0.03350064168466815 EFVFQPESL 9 Unmodified _EFVFQPESL_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2705688476562 2 548.27149 1094.52843 0.3819 0.00020939 0.47777 0.00026195 0.85967 0.00047133 548.2715619789566 89.63 0.36795 89.128 88.889 89.257 -0.50171 38 15 3 0 0 0 0.5029 1 49034 49034 7.2892 0.56607 1 1051100 8231 7454 5598 5721 9599 9599 -0.015056695135172049 EFVGEIKDLE 10 Unmodified _EFVGEIKDLE_ 0 0 0 REV__nc|ENSG00000100605|Q13572-2|ITPK1 REV__nc|ENSG00000100605|Q13572-2|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5374450683594 3 393.536166 1177.58667 0.79406 0.00031249 1.2517 0.0004926 2.0458 0.00080509 393.5367888180872 17.965 0.30274 15.378 15.136 15.439 -2.5866 34 26 2 0 0 0 0.69377 1 9379 9379 1.7423 0 1 2075600 + 8232 18091 5599 5722 9600 9600 0.004979673411071417 EFVMKQAL 8 Unmodified _EFVMKQAL_ 0 0 0 ENSG00000168993|ENST00000304062|CPLX1 ENSG00000168993|ENST00000304062|CPLX1 ENSG00000168993|ENST00000304062|CPLX1 MSMS AL20221201_MKP_PDAC_01 4 483.2619323730469 2 483.259871 964.505189 NaN NaN NaN NaN NaN NaN NaN 32.159 1 28.364 27.864 28.864 -3.7957 0 0 0 0.9249 1 18291 18291 15.768 1.1865 1 8233 7823 5600 5723 9601 9601 0.021516131681551087 EFVYAYIYFF 10 Unmodified _EFVYAYIYFF_ 0 0 0 REV__ENSG00000147606|ENST00000276609|SLC26A7 REV__ENSG00000147606|ENST00000276609|SLC26A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.5531921386719 3 454.553269 1360.63798 NaN NaN NaN NaN NaN NaN NaN 84.326 1 83.827 83.327 84.327 -0.49961 0 0 0 1.0024 1 46147 46147 0.13989 0 1 + 8234 20903 5601 5724 9602 9602 -0.027916638942087957 EFWECTWKL 9 Unmodified _EFWECTWKL_ 0 0 0 nc|ENSG00000002016|P43351-2|RAD52;ENST00000488642.6_1_12:1034631-1036165:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF nc|ENSG00000002016|P43351-2|RAD52 nc|ENSG00000002016|P43351-2|RAD52 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.29150390625 2 621.286617 1240.55868 NaN NaN NaN NaN NaN NaN NaN 79.17 1 79.17 78.67 79.67 0 0 0 0 0.84564 1 43981 43981 2.0598 0.21551 1 8235 16005 5602 5725 9603 9603 -0.051976341199861054 EFWHYSFF 8 Unmodified _EFWHYSFF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7527465820312 2 581.753267 1161.49198 0.44231 0.00025732 0.47857 0.00027841 0.92088 0.00053572 581.7535723971057 87.672 0.34107 87.168 86.992 87.334 -0.50423 33 15 3 0 0 0 0.80676 1 47949 47949 2.5775 0.27475 1 975780 8236 9082 5603 5726 9604 9604 -0.0823050161957326 EFWHYSFF 8 Unmodified _EFWHYSFF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 581.753267 1161.49198 0.44231 0.00025732 0.47857 0.00027841 0.92088 0.00053572 581.7535723971057 87.672 0.34107 87.168 86.992 87.334 -0.50423 0 0 NaN 2.5775 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 975780 8237 9082 5603 5726 -0.0823050161957326 EFWLSWVF 8 Unmodified _EFWLSWVF_ 0 0 0 ENST00000390627.3_3_14:107049081-107049150:-|nuORF;nc|ENSG00000211967|P01767|IGHV3-53 ENST00000390627.3_3_14:107049081-107049150:-|nuORF ENST00000390627.3_3_14:107049081-107049150:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.275146484375 2 557.273835 1112.53312 0.62174 0.00034648 2.179 0.0012143 2.8007 0.0015608 557.2751892154233 65.746 0.55093 59.571 59.414 59.965 -6.1757 54 32 2 0 0 0 0.5953 1 42709 42709 26.341 3.1929 1 17335000 8238 12650 5604 5727 9605 9605 -0.018647405800948036 EFYLHIHF 8 Unmodified _EFYLHIHF_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENST00000482392.1_1_2:232070951-232079819:+|nuORF ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.278564453125 2 553.276909 1104.53927 NaN NaN NaN NaN NaN NaN NaN 61.157 1 61.157 60.657 61.657 0 0 0 0 0.95201 1 34103 34103 10.183 1.5901 1 8239 4763 5605 5728 9606 9606 -0.008822223485822178 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825073242188 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 65.506 1 65.506 65.006 66.006 0 0 0 0 0.85798 1 36537 36537 0.23584 0.028987 1 + 8240 20313 5606 5729 9607 9607 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8816528320312 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 103.03 1 103.03 102.53 103.53 0 0 0 0 0.85798 1 56807 56807 0.23584 0.11298 1 + 8241 20313 5606 5729 9608 9608 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8821411132812 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 19.402 1 19.425 18.925 19.925 0.023106 0 0 0 0.85798 1 9780 9780 0.23584 0.11298 1 + 8242 20313 5606 5729 9609 9609 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.882080078125 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 51.959 1 51.525 51.025 52.025 -0.43367 0 0 0 0.85798 1 28045 28045 0.23584 0.15249 1 + 8243 20313 5606 5729 9610 9610 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.88232421875 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 102.28 1 102.17 101.67 102.67 -0.11613 0 0 0 0.85798 1 55806 55806 0.23584 0.15249 1 + 8244 20313 5606 5729 9611 9611 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.88232421875 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 102.63 1 102.53 102.03 103.03 -0.10458 0 0 0 0.85798 1 55992 55992 0.23584 0.15249 1 + 8245 20313 5606 5729 9612 9612 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822631835938 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 103.41 1 103.31 102.81 103.81 -0.10458 0 0 0 0.85798 1 56404 56404 0.23584 0.15249 1 + 8246 20313 5606 5729 9613 9613 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8822937011719 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 19.087 1 19.095 18.595 19.595 0.0078487 0 0 0 0.85798 1 9698 9698 0.23584 0 1 + 8247 20313 5606 5729 9614 9614 -0.019437807453869027 EFYNKWYPR 9 Unmodified _EFYNKWYPR_ 0 0 0 REV__ENSG00000138175|ENST00000260746|ARL3 REV__ENSG00000138175|ENST00000260746|ARL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8841247558594 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 99.176 1 99.148 98.648 99.648 -0.028282 0 0 0 0.85798 1 55084 55084 0.23584 0.141 1 + 8248 20313 5606 5729 9615 9615 -0.019437807453869027 EFYYDVTF 8 Unmodified _EFYYDVTF_ 0 0 0 REV__ENSG00000178773|ENST00000319518|CPNE7 REV__ENSG00000178773|ENST00000319518|CPNE7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.7681884765625 2 542.237116 1082.45968 0.91898 0.00049831 1.2674 0.00068721 2.1863 0.0011855 542.2371304488875 52.811 0.29533 47.051 46.966 47.261 -5.7592 24 15 2 0 0 0 8.7369 1 33300 33300 18.135 8.7519 1 17683000 + 8249 23065 5607 5730 9616 9616 -0.07825333813252655 EGAESSKQHSL 11 Unmodified _EGAESSKQHSL_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.8079833984375 2 586.780741 1171.54693 -0.0056454 -3.3126E-06 1.7809 0.001045 1.7753 0.0010417 586.7813317319133 61.619 0.25708 61.131 60.965 61.222 -0.48764 21 11 3 0 0 0 0.27972 1 33554 33554 13.042 4.2971 1 1199600 + 8250 22894 5608 5731 9617 9617 -0.031981596096102294 EGAGATGLEVL 11 Unmodified _EGAGATGLEVL_ 0 0 0 REV__nc|ENSG00000127564|Q99640-2|PKMYT1 REV__nc|ENSG00000127564|Q99640-2|PKMYT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7717590332031 2 508.766571 1015.51859 0.6223 0.0003166 3.1781 0.0016169 3.8004 0.0019335 508.76813095800304 45.796 0.52131 40.841 40.582 41.104 -4.9549 61 34 2 0 0 0 0.064513 1 28033 28033 47.749 2.0491 1 54945000 + 8251 29623 5609 5732 9618 9618 0.011451424810957178 EGARLTGADF 10 Unmodified _EGARLTGADF_ 0 0 0 REV__ENSG00000243708|ENST00000458483|PLA2G4B REV__ENSG00000243708|ENST00000458483|PLA2G4B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.7010498046875 2 518.756538 1035.49852 0.68269 0.00035415 0.23445 0.00012162 0.91714 0.00047577 518.7564705188624 45.544 0.45713 40.589 40.375 40.832 -4.9549 74 30 3 0 0 0 0.15393 1 27864 27864 34.932 1.4872 1 34958000 + 8252 24475 5610 5733 9619 9619 -0.017806084588755766 EGATEWSDCFH 11 Unmodified _EGATEWSDCFH_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8341064453125 3 427.832877 1280.4768 NaN NaN NaN NaN NaN NaN NaN 40.869 1 40.869 40.369 41.369 0 0 0 0 0.93224 1 21998 21998 2.6312 0.54727 1 8253 4556 5611 5734 9620 9620 -0.15221781269724488 EGCCPSHF 8 Unmodified _EGCCPSHF_ 0 0 0 ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF ENST00000478069.1_1_4:95290987-95291311:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.4081115722656 2 440.159831 878.305109 NaN NaN NaN NaN NaN NaN NaN 98.091 1 91.915 91.415 92.415 -6.1757 0 0 0 0.97444 1 65026 65026 2.8892 0.31174 1 8254 14009 5612 5735 9621 9621 -0.13891184771091503 EGCKVHVVF 9 Carbamidomethyl (C) _EGC(Carbamidomethyl (C))KVHVVF_ EGC(1)KVHVVF EGC(89)KVHVVF 0 1 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7734375 2 537.773677 1073.5328 0.16901 9.0891E-05 -0.21368 -0.00011491 -0.04467 -2.4022E-05 537.7735680186686 41.463 0.71185 36.855 36.599 37.311 -4.6079 139 46 4 0 0 0 0.0086209 3 24749 24749;24882;25020 89.401 61.227 1 225340000 8255 3395 5613 5736 9622;9623;9624 9622 344 -0.0010248357159525767 EGCRACRGF 9 Unmodified _EGCRACRGF_ 0 0 0 REV__ENSG00000145012|ENST00000617246|LPP REV__ENSG00000145012|ENST00000617246|LPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7187805175781 2 499.718378 997.422204 0.19666 9.8274E-05 0.90811 0.0004538 1.1048 0.00055207 499.71875421908527 78.951 0.95311 78.465 78.059 79.012 -0.48596 72 39 2 0 0 0 0.54444 1 43388 43388 4.756 0 1 1197500 + 8256 20750 5614 5737 9625 9625 -0.07661026831476647 EGCVEDQGVT 10 Unmodified _EGCVEDQGVT_ 0 0 0 ENST00000301318.7_1_19:57059230-57060426:+|nuORF ENST00000301318.7_1_19:57059230-57060426:+|nuORF ENST00000301318.7_1_19:57059230-57060426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.71728515625 2 518.716221 1035.41789 0.54802 0.00028426 2.1417 0.001111 2.6898 0.0013952 518.7171394171427 36.333 0.41421 32.14 31.914 32.328 -4.1928 34 24 2 0 0 0 0.48505 1 21134 21134 17.113 3.2068 1 26404000 8257 11567 5615 5738 9626 9626 -0.09840257564064814 EGDCGDILRM 10 Unmodified _EGDCGDILRM_ 0 0 0 SAT2|p.L20M|1|0.17|ENSG00000141504|chr17:7627578-7627578|G/T|missense_variant SAT2|p.L20M|1|0.17|ENSG00000141504|chr17:7627578-7627578|G/T|missense_variant SAT2|p.L20M|1|0.17|ENSG00000141504|chr17:7627578-7627578|G/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.743408203125 2 554.741716 1107.46888 NaN NaN NaN NaN NaN NaN NaN 83.343 1 82.845 82.345 83.345 -0.49751 0 0 0 0.97855 1 45622 45622 2.9952 0.10602 1 8258 30156 5616 5739 9627 9627 -0.08055631790853113 EGDCMESCDD 10 Unmodified _EGDCMESCDD_ 0 0 0 REV__nc|ENSG00000079263|Q13342-6|SP140 REV__nc|ENSG00000079263|Q13342-6|SP140 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.4371643066406 3 368.436918 1102.28893 NaN NaN NaN NaN NaN NaN NaN 1.3653 1 1.3653 0.86526 1.8653 0 0 0 0 1.0061 1 665 665 0 0 1 + 8259 17643 5617 5740 9628 9628 -0.25812723580816055 EGDCMESCDD 10 Unmodified _EGDCMESCDD_ 0 0 0 REV__nc|ENSG00000079263|Q13342-6|SP140 REV__nc|ENSG00000079263|Q13342-6|SP140 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.437255859375 3 368.436918 1102.28893 NaN NaN NaN NaN NaN NaN NaN 1.5872 1 1.5872 1.0872 2.0872 0 0 0 0 1.0061 1 779 779 0 0 1 + 8260 17643 5617 5740 9629 9629 -0.25812723580816055 EGDCMESCDD 10 Unmodified _EGDCMESCDD_ 0 0 0 REV__nc|ENSG00000079263|Q13342-6|SP140 REV__nc|ENSG00000079263|Q13342-6|SP140 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.1998901367188 3 368.436918 1102.28893 NaN NaN NaN NaN NaN NaN NaN 14.214 1 14.184 13.684 14.684 -0.030868 0 0 0 1.0061 1 6896 6896 0 0 1 + 8261 17643 5617 5740 9630 9630 -0.25812723580816055 EGDDRPFFWLF 11 Unmodified _EGDDRPFFWLF_ 0 0 0 ENSG00000119772|ENST00000321117|DNMT3A;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENST00000474887.5_1_2:25458684-25467188:-|nuORF ENSG00000119772|ENST00000321117|DNMT3A ENSG00000119772|ENST00000321117|DNMT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 714.8321533203125 2 714.832777 1427.651 0.28233 0.00020182 -0.93032 -0.00066503 -0.64799 -0.00046321 714.8327773305431 99.623 0.17521 93.447 93.365 93.541 -6.1757 27 10 4 0 0 0 0.28407 1 66407 66407 27.629 1.3607 1 56359000 8262 3467 5618 5741 9631 9631 -0.045718327821077764 EGDEYEYDDME 11 Unmodified _EGDEYEYDDME_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.4923706054688 3 465.490734 1393.45037 NaN NaN NaN NaN NaN NaN NaN 28.117 1 28.117 27.617 28.617 0 0 0 0 0.94287 1 14511 14511 0.45452 0.29519 1 8263 7662 5619 5742 9632 9632 -0.23061559742382087 EGDLEGTSGS 10 Unmodified _EGDLEGTSGS_ 0 0 0 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.1982116699219 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 12.142 1 12.142 11.642 12.642 0 0 0 0 1.0061 1 5751 5751 0 0 1 8264 4343 5620 5743 9633 9633 -0.09429177100344077 EGDLEGTSGS 10 Unmodified _EGDLEGTSGS_ 0 0 0 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.198486328125 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 2.805 1 2.7926 2.2926 3.2926 -0.012334 0 0 0 1.0061 1 1424 1424 0 0 1 8265 4343 5620 5743 9634 9634 -0.09429177100344077 EGDLEGTSGS 10 Unmodified _EGDLEGTSGS_ 0 0 0 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 ENSG00000131721|ENST00000371388|RHOXF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1984558105469 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 7.7275 1 7.7428 7.2428 8.2428 0.015238 0 0 0 1.0061 1 3854 3854 0 0 1 8266 4343 5620 5743 9635 9635 -0.09429177100344077 EGEAYMWHHWK 11 Unmodified _EGEAYMWHHWK_ 0 0 0 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 737.3226318359375 2 737.322054 1472.62955 0.54615 0.00040269 1.2491 0.00092098 1.7952 0.0013237 737.3227850364977 51.357 0.45142 51.357 51.109 51.561 0 50 20 4 0 0 0 0.71341 1 28404 28404 2.9952 0.49676 1 6382400 8267 16286 5621 5744 9636 9636 -0.08785541082488635 EGEAYMWHHWK 11 Unmodified _EGEAYMWHHWK_ 0 0 0 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 nc|ENSG00000155307|Q9NSI8-3|SAMSN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 737.322054 1472.62955 0.15153 0.00011172 1.1796 0.00086974 1.3311 0.00098147 737.3230424675307 51.968 0.38889 51.535 51.381 51.77 -0.43367 0.088687 -6.0312E-05 NaN 2.9952 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3571400 8268 16286 5621 5744 -0.08785541082488635 EGECCPVCEDP 11 Unmodified _EGECCPVCEDP_ 0 0 0 ENSG00000150938|ENST00000280527|CRIM1 ENSG00000150938|ENST00000280527|CRIM1 ENSG00000150938|ENST00000280527|CRIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7003173828125 2 590.701399 1179.38825 -0.40733 -0.00024061 -1.4601 -0.00086249 -1.8674 -0.0011031 590.7005640743304 29.548 0.31194 29.548 29.391 29.702 0 33 19 2 0 0 0 0.65108 1 15281 15281 8.7454 2.0222 1 4385800 8269 6079 5622 5745 9637 9637 -0.19427280896070442 EGEEKVFVL 9 Unmodified _EGEEKVFVL_ 0 0 0 ENST00000464676.5_1_3:133669982-133717557:-|nuORF ENST00000464676.5_1_3:133669982-133717557:-|nuORF ENST00000464676.5_1_3:133669982-133717557:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.5218811035156 3 350.521969 1048.54408 -0.59125 -0.00020725 0.17002 5.9595E-05 -0.42123 -0.00014765 350.52199136945995 18.475 0.11012 18.498 18.439 18.55 0.023106 34 23 2 0 0 0 0.58865 1 9260 9260 1.0715 0.61312 1 519430 8270 13721 5623 5746 9638 9638 0.02174617003538515 EGEEVKALHQY 11 Unmodified _EGEEVKALHQY_ 0 0 0 REV__nc|ENSG00000122203|Q96A73-2|KIAA1191 REV__nc|ENSG00000122203|Q96A73-2|KIAA1191 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8835144042969 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 33.935 1 33.743 33.243 34.243 -0.19131 0 0 0 0.93737 1 17710 17710 4.4062 3.0765 1 + 8271 19333 5624 5747 9639 9639 -0.013567270243584062 EGELLQLAL 9 Unmodified _EGELLQLAL_ 0 0 0 ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1 ENST00000506360.5_1_4:8220037-8234255:+|nuORF ENST00000506360.5_1_4:8220037-8234255:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2818603515625 2 493.281857 984.549162 0.18922 9.3337E-05 0.6291 0.00031032 0.81831 0.00040366 493.28213669956295 99.002 0.30172 92.827 92.689 92.99 -6.1757 32 19 2 0 0 0 0.047196 1 65935 65935 46.021 0.32134 1 60161000 8272 3828 5625 5748 9640 9640 0.05626920866131968 EGELSWYNIF 10 Unmodified _EGELSWYNIF_ 0 0 0 nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB nc|ENSG00000127329|P23467|PTPRB nc|ENSG00000127329|P23467|PTPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2930908203125 2 629.292953 1256.57135 0.16181 0.00010182 0.54185 0.00034098 0.70366 0.00044281 629.293260287504 95.443 0.48326 95.075 94.735 95.218 -0.36815 53 22 3 0 0 0 0.62068 1 52107 52107 10.074 0.6908 1 1433000 8273 3998 5626 5749 9641 9641 -0.04666899456105966 EGELSWYNIF 10 Unmodified _EGELSWYNIF_ 0 0 0 nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB nc|ENSG00000127329|P23467|PTPRB nc|ENSG00000127329|P23467|PTPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.2918090820312 2 629.292953 1256.57135 2.1684 0.0013646 -1.0393 -0.00065404 1.1291 0.00071055 629.2922383333031 94.946 0.5801 94.961 94.695 95.275 0.014252 55 21 3 0 0 0 0.46514 1 52753 52753 18.146 0.011366 1 5001500 8274 3998 5626 5749 9642 9642 -0.04666899456105966 EGELVSFTTL 10 Unmodified _EGELVSFTTL_ 0 0 0 REV__nc|ENSG00000057252|P35610-3|SOAT1 REV__nc|ENSG00000057252|P35610-3|SOAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1799011230469 3 365.857128 1094.54956 -0.58923 -0.00021558 2.7131 0.00099262 2.1239 0.00077704 366.19234964129737 26.992 0.3138 26.992 26.719 27.033 0 22 14 2 0 0 0 0.23693 1 13795 13795 3.3196 0.58445 1 444250 + 8275 17302 5627 5750 9643 9643 0.006062957953417936 EGERRHRKPRE 11 Unmodified _EGERRHRKPRE_ 0 0 0 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.7184448242188 4 363.199999 1448.77089 0.82666 0.00030024 -3.3849 -0.0012294 -2.5582 -0.00092915 363.19927570468104 14.618 0.045464 12.115 12.101 12.147 -2.5029 10 9 2 0 0 0 0.30558 1 7455 7455 0.36667 0 1 1431600 8276 3979 5628 5751 9644 9644 0.06445593335024569 EGEWAPAA 8 Unmodified _EGEWAPAA_ 0 0 0 ENST00000532896.5_1_19:18304624-18307257:+|nuORF ENST00000532896.5_1_19:18304624-18307257:+|nuORF ENST00000532896.5_1_19:18304624-18307257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.370361328125 1 830.367909 829.360633 0.20771 0.00017248 0.27403 0.00022755 0.48174 0.00040002 830.3683335266347 50.026 0.20792 50.026 49.926 50.134 0 15 9 2 0 0 0 0.67481 1 27533 27533 19.439 5.9311 1 3083000 8277 14931 5629 5752 9645 9645 -0.06087311987482735 EGFEEKKGASG 11 Unmodified _EGFEEKKGASG_ 0 0 0 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2671508789062 2 569.772385 1137.53022 0.34401 0.00019601 -2.3312 -0.0013283 -1.9872 -0.0011323 569.7747894053598 90.328 0.61754 90.328 89.916 90.533 0 79 41 3 0 0 0 0.6889 2 49892 49793;49892 5.2969 0.26005 1 2635200 8278 428 5630 5753 9646;9647 9647 -0.03304660495564349 EGFENCHY 8 Unmodified _EGFENCHY_ 0 0 0 REV__ENSG00000197608|ENST00000594440|ZNF841 REV__ENSG00000197608|ENST00000594440|ZNF841 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.224853515625 2 499.687267 997.359981 0.32115 0.00016047 0.077444 3.8698E-05 0.39859 0.00019917 499.6870495960167 45.607 0.27505 45.607 45.512 45.787 0 19 13 2 0 0 0 8.7369 1 24950 24950 10.183 0.83596 1 4465200 + 8279 23946 5631 5754 9648 9648 -0.13880474698828493 EGFGEGVSF 9 Unmodified _EGFGEGVSF_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4080810546875 1 928.404689 927.397412 0.491 0.00045585 0.68757 0.00063834 1.1786 0.0010942 928.405470721222 61.191 0.31913 61.191 61.024 61.343 0 21 13 2 0 0 0 0.32871 1 34080 34080 15.847 4.2069 1 416920 8280 10510 5632 5755 9649 9649 -0.0691906016155599 EGFHGDSTPF 10 Unmodified _EGFHGDSTPF_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2325439453125 2 547.232896 1092.45124 -0.30665 -0.00016781 0.094432 5.1676E-05 -0.21222 -0.00011613 547.2326626399833 41.071 0.34351 41.071 40.961 41.304 0 35 17 3 0 0 0 0.22237 2 22116 22105;22116 46.021 33.489 1 10618000 8281 6508 5633 5756 9650;9651 9651 -0.0912888772986662 EGFKEAVQY 9 Unmodified _EGFKEAVQY_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000115904|Q07889-2|SOS1 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7610473632812 2 535.761289 1069.50803 0.44593 0.00023891 -0.84267 -0.00045147 -0.39674 -0.00021256 535.7602653228305 36.113 0.19346 36.113 35.993 36.186 0 24 9 4 0 0 0 0.044011 1 19146 19146 47.749 23.728 1 6181100 8282 3173 5634 5757 9652 9652 -0.023948401733377978 EGFKEAVQY 9 Unmodified _EGFKEAVQY_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000115904|Q07889-2|SOS1 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.761289 1069.50803 -0.57071 -0.00030576 2.2764 0.0012196 1.7057 0.00091385 535.7620133592314 36.196 0.16006 35.946 35.906 36.066 -0.2497 -0.083638 0.0018247 NaN 47.749 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1356700 8283 3173 5634 5757 -0.023948401733377978 EGFKIDTMGTY 11 Unmodified _EGFKIDTMGTY_ 0 0 0 ENSG00000134371|ENST00000367435|CDC73 ENSG00000134371|ENST00000367435|CDC73 ENSG00000134371|ENST00000367435|CDC73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.2853393554688 2 631.292096 1260.56964 0.47061 0.00029709 3.6137 0.0022813 4.0843 0.0025784 631.295943578002 46.552 0.26583 46.552 46.412 46.678 0 26 11 3 0 0 0 0.67922 1 25385 25385 6.2058 0 1 3113600 8284 4602 5635 5758 9653 9653 -0.050222765363514554 EGFSCYSPGL 10 Unmodified _EGFSCYSPGL_ 0 0 0 REV__ENSG00000131808|ENST00000533718|FSHB REV__ENSG00000131808|ENST00000533718|FSHB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.2275695800781 3 353.819909 1058.4379 2.0441 0.00072324 -0.70418 -0.00024915 1.3399 0.00047408 353.81943000279307 35.901 0.31487 31.708 31.555 31.87 -4.1928 29 19 2 0 0 0 0.23862 1 20988 20988 0.69767 0 1 3348800 + 8285 19813 5636 5759 9654 9654 -0.0889846183345071 EGGASDWAEEN 11 Unmodified _EGGASDWAEEN_ 0 0 0 REV__ENST00000504270.2_1_12:6557114-6557195:-|nuORF REV__ENST00000504270.2_1_12:6557114-6557195:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8198547363281 3 388.819513 1163.43671 0.25389 9.8715E-05 -0.57502 -0.00022358 -0.32114 -0.00012486 388.8192430519447 52.978 0.34233 52.978 52.798 53.141 0 57 16 5 0 0 0 0.71341 1 29416 29416 1.2148 0.14337 1 5039600 + 8286 28051 5637 5760 9655 9655 -0.13847004668650698 EGGIIKCY 8 Unmodified _EGGIIKCY_ 0 0 0 nc|ENSG00000204179|Q4JDL3-6|PTPN20;nc|ENSG00000204179|Q4JDL3-4|PTPN20;nc|ENSG00000204179|Q4JDL3-3|PTPN20;nc|ENSG00000204179|Q4JDL3-2|PTPN20;ENSG00000204179|ENST00000374339|PTPN20 nc|ENSG00000204179|Q4JDL3-6|PTPN20 nc|ENSG00000204179|Q4JDL3-6|PTPN20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.492919921875 2 441.723121 881.431689 -0.36468 -0.00016109 0.46114 0.0002037 0.096458 4.2608E-05 441.72328641182025 33.819 0.20456 33.819 33.765 33.97 0 15 9 2 0 0 0 8.7369 1 17834 17834 5.7604 0.52976 1 1167000 8287 10249 5638 5761 9656 9656 -0.013769352743224772 EGGPNPEHNSN 11 Unmodified _EGGPNPEHNSN_ 0 0 0 ENST00000581120.1_1_17:61678442-61683801:+|nuORF;ENSG00000136463|ENST00000258975|TACO1 ENST00000581120.1_1_17:61678442-61683801:+|nuORF ENST00000581120.1_1_17:61678442-61683801:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.830322265625 3 384.495253 1150.46393 1.5895 0.00061117 1.3742 0.00052837 2.9637 0.0011395 384.4957562479233 21.035 0.30473 18.342 18.148 18.453 -2.693 40 16 4 0 0 0 0.69708 1 11185 11185 2.084 0.75432 1 6225900 8288 4823 5639 5762 9657 9657 -0.10528476337617576 EGGRLRCFGV 10 Unmodified _EGGRLRCFGV_ 0 0 0 ENST00000264554.10_1_19:416804-417233:-|nuORF ENST00000264554.10_1_19:416804-417233:-|nuORF ENST00000264554.10_1_19:416804-417233:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2798461914062 2 547.2822 1092.54985 -0.37603 -0.00020579 -4.0512 -0.0022171 -4.4272 -0.0024229 547.2796781611362 26.882 0.25263 26.882 26.719 26.972 0 17 11 2 0 0 0 0.6606 1 13782 13782 7.2892 1.0834 1 1057100 8289 11316 5640 5763 9658 9658 0.007274370341974645 EGHAYGVSY 9 Unmodified _EGHAYGVSY_ 0 0 0 nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224588736-224599215:-|nuORF nc|ENSG00000162923|Q9H7D7-2|WDR26 nc|ENSG00000162923|Q9H7D7-2|WDR26 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.267333984375 2 491.716882 981.41921 -0.22373 -0.00011001 1.6573 0.00081493 1.4336 0.00070492 491.7179747395537 29.379 0.14693 29.379 29.285 29.432 0 11 6 2 0 0 0 0.17275 1 15211 15211 21.747 11.563 1 587040 8290 6929 5641 5764 9659 9659 -0.07224255412995717 EGHFISLH 8 Unmodified _EGHFISLH_ 0 0 0 ENST00000509635.5_1_4:83351811-83369104:+|nuORF ENST00000509635.5_1_4:83351811-83369104:+|nuORF ENST00000509635.5_1_4:83351811-83369104:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.9731140136719 2 470.237784 938.461016 NaN NaN NaN NaN NaN NaN NaN 103.74 1 97.568 97.068 98.068 -6.1757 0 0 0 0.97444 1 69530 69530 2.5775 0 1 8291 14578 5642 5765 9660 9660 -0.010676549337972574 EGHHIQQYYQ 10 Unmodified _EGHHIQQYYQ_ 0 0 0 REV__ENSG00000008197|ENST00000008391|TFAP2D REV__ENSG00000008197|ENST00000008391|TFAP2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.7938842773438 2 651.796726 1301.5789 NaN NaN NaN NaN NaN NaN NaN 45.937 1 45.937 45.437 46.437 0 0 0 0 0.92825 1 25077 25077 6.7232 0.51738 1 + 8292 17020 5643 5766 9661 9661 -0.0598274713581759 EGHLHFGY 8 Unmodified _EGHLHFGY_ 0 0 0 REV__nc|ENSG00000065054|Q15599-2|NHERF2 REV__nc|ENSG00000065054|Q15599-2|NHERF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2259216308594 2 480.222134 958.429715 0.62124 0.00029833 3.0765 0.0014774 3.6977 0.0017757 480.2240886104769 57.345 0.26896 57.345 57.221 57.49 0 18 11 2 0 0 0 0.72953 1 31926 31926 14.582 1.0738 1 759480 + 8293 17369 5644 5767 9662 9662 -0.05116227967903342 EGHQSSVVS 9 Unmodified _EGHQSSVVS_ 0 0 0 nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2208862304688 2 465.219788 928.425024 -0.25699 -0.00011956 0.23321 0.00010849 -0.023782 -1.1064E-05 465.2204276481837 55.46 0.22512 55.46 55.327 55.552 0 15 9 3 0 0 0 0.56345 1 30818 30818 3.5965 0 1 897670 8294 8626 5645 5768 9663 9663 -0.04205156901309692 EGHRRCLGALF 11 Unmodified _EGHRRCLGALF_ 0 0 0 REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8287353515625 2 629.827306 1257.64006 0.12318 7.7584E-05 1.4707 0.00092629 1.5939 0.0010039 629.8283507948134 72.434 0.28263 72.476 72.358 72.64 0.041733 35 12 4 0 0 0 0.10976 1 39880 39880 51.63 15.503 1 4990500 + 8295 27108 5646 5769 9664 9664 0.02154486362633179 EGHRRCLGALF 11 Unmodified _EGHRRCLGALF_ 0 0 0 REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 629.827306 1257.64006 0.433 0.00027271 0.26691 0.00016811 0.69991 0.00044082 629.8272405200314 73.017 0.28823 72.541 72.363 72.651 -0.47588 0.032556 -0.0009578 NaN 51.63 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1407000 + 8296 27108 5646 5769 0.02154486362633179 EGISEMWDKMK 11 Unmodified _EGISEMWDKMK_ 0 0 0 ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3119506835938 2 677.312506 1352.61046 -0.66028 -0.00044722 -0.48842 -0.00033081 -1.1487 -0.00077803 677.3127361774485 33.788 0.31434 33.788 33.633 33.947 0 34 15 3 0 0 0 0.35681 1 17758 17758 23.79 8.5413 1 6472000 8297 6126 5647 5770 9665 9665 -0.05174258488409578 EGISEMWDKMK 11 Unmodified _EGISEMWDKMK_ 0 0 0 ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3123168945312 2 677.312506 1352.61046 -0.28142 -0.00019061 1.3641 0.00092394 1.0827 0.00073333 677.3130071958868 34.04 0.35485 33.848 33.643 33.998 -0.19131 46 13 5 0 0 0 0.24216 1 17731 17731 29.841 12.728 1 6273100 8298 6126 5647 5770 9666 9666 -0.05174258488409578 EGIYLILDLC 10 Unmodified _EGIYLILDLC_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3020629882812 2 576.304475 1150.5944 NaN NaN NaN NaN NaN NaN NaN 92.788 1 92.788 92.288 93.288 0 0 0 0 0.88176 1 51305 51305 8.7454 0.58988 1 8299 4738 5648 5771 9667 9667 0.025124033370275356 EGKAETFWHHR 11 Unmodified _EGKAETFWHHR_ 0 0 0 REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5614929199219 3 466.56182 1396.66363 -0.28008 -0.00013068 -0.92576 -0.00043193 -1.2058 -0.0005626 466.5613095053988 51.412 0.29981 50.998 50.856 51.156 -0.41351 42 15 3 0 0 0 0.69316 1 27686 27686 2.2527 0.92309 1 24346000 + 8300 22734 5649 5772 9668 9668 -0.018833765992212648 EGKAETFWHHR 11 Unmodified _EGKAETFWHHR_ 0 0 0 REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.5611572265625 3 466.56182 1396.66363 0.10398 4.8515E-05 -0.80174 -0.00037406 -0.69775 -0.00032555 466.56137874010136 51.07 0.20481 51.016 50.942 51.147 -0.053871 16 9 2 0 0 0 0.71341 1 27646 27646 1.2148 0 1 2458300 + 8301 22734 5649 5772 9669 9669 -0.018833765992212648 EGKAETFWHHR 11 Unmodified _EGKAETFWHHR_ 0 0 0 REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF REV__ENST00000559791.1_1_15:77470364-77471415:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.337890625 2 699.339092 1396.66363 -0.10067 -7.0403E-05 -0.55105 -0.00038537 -0.65172 -0.00045577 699.3383341140403 53.508 0.2556 53.444 53.262 53.517 -0.063423 27 12 4 0 0 0 0.58219 1 29009 29009 12.241 0 1 9168900 + 8302 22734 5649 5772 9670 9670 -0.018833765992212648 EGKKISRK 8 Unmodified _EGKKISRK_ 0 0 0 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 MSMS AL20221201_MKP_PDAC_01 4 473.2941284179688 2 473.295633 944.576714 NaN NaN NaN NaN NaN NaN NaN 55.153 1 49.232 48.732 49.732 -5.9211 0 0 0 0.7268 1 35075 35075 26.884 0 1 + 8303 20899 5650 5773 9671 9671 0.1022086891704248 EGKTPLAP 8 Unmodified _EGKTPLAP_ 0 0 0 REV__ENSG00000163207|ENST00000368764|IVL REV__ENSG00000163207|ENST00000368764|IVL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7288818359375 2 406.729261 811.443968 0.41985 0.00017076 0.39087 0.00015898 0.81071 0.00032974 406.72927879258805 53.861 0.3232 53.861 53.728 54.051 0 23 14 2 0 0 0 0.74163 1 29868 29868 13.508 0 1 1864300 + 8304 21735 5651 5774 9672 9672 0.030704244603725783 EGLEEESTFA 10 Unmodified _EGLEEESTFA_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.242919921875 2 556.243126 1110.4717 0.10865 6.0434E-05 0.16218 9.021E-05 0.27082 0.00015064 556.2428684187765 60.582 0.19919 60.093 60.05 60.249 -0.48932 13 9 2 0 0 0 0.60623 1 33005 33005 10.824 1.4408 1 2829700 + 8305 19656;22513 5652 5775 9673 9673 -0.07911761860691513 EGLLSHYL 8 Unmodified _EGLLSHYL_ 0 0 0 ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000563160.5_1_15:45879945-45897659:+|nuORF ENST00000563160.5_1_15:45879945-45897659:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2485656738281 2 466.247818 930.481082 1.1266 0.00052529 -0.13852 -6.4583E-05 0.98813 0.00046071 466.2477934735953 54.336 0.53179 48.471 48.247 48.779 -5.8653 98 32 4 0 0 0 0.46494 1 34641 34641 38.151 0 1 227140000 8306 2182 5653 5776 9674 9674 0.013060960061352489 EGLLSLSFV 9 Unmodified _EGLLSLSFV_ 0 0 0 REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 964.539306640625 1 964.534975 963.527698 0.39445 0.00038046 0.33954 0.00032749 0.73399 0.00070796 964.5351656106685 86.103 0.32347 85.6 85.468 85.791 -0.50318 19 12 2 0 0 0 0.43463 1 47081 47081 10.824 0 1 542820 + 8307 27660 5654 5777 9675 9675 0.04447535837425676 EGLLSLSFV 9 Unmodified _EGLLSLSFV_ 0 0 0 REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF REV__ENST00000479638.5_1_6:160211006-160211772:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 964.534975 963.527698 0.16781 0.00016186 0.82039 0.00079129 0.9882 0.00095315 964.5355872127442 85.548 0.31217 85.548 85.411 85.723 0 -0.025919 0.00022232 NaN 10.824 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 323060 + 8308 27660 5654 5777 0.04447535837425676 EGLPEGIPF 9 Unmodified _EGLPEGIPF_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF;ENST00000473333.1_1_7:74159164-74160345:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4893188476562 1 958.488024 957.480748 -0.03944 -3.7802E-05 1.5838 0.0015181 1.5444 0.0014803 958.4895854038062 81.008 0.32227 81.008 80.799 81.121 0 24 14 2 0 0 0 0.25681 1 44928 44928 19.257 4.4187 1 539100 8309 10851 5655 5778 9676 9676 0.0003067628629196406 EGLPENIPF 9 Unmodified _EGLPENIPF_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF;ENST00000441415.1_1_7:64552288-64560584:+|nuORF;ENST00000414608.1_1_7:65246370-65266901:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.258544921875 2 508.258382 1014.50221 0.37685 0.00019153 0.55034 0.00027972 0.92719 0.00047125 508.2584837405881 76.683 0.38387 76.683 76.468 76.852 0 37 15 3 0 0 0 0.026094 1 42653 42653 57.471 17.514 1 2774300 8310 10851 5656 5779 9677 9677 -0.0044593868499305245 EGLSLAVLAV 10 Unmodified _EGLSLAVLAV_ 0 0 0 nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141 nc|ENSG00000163492|Q6ZP82-1|CCDC141 nc|ENSG00000163492|Q6ZP82-1|CCDC141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2923583984375 2 486.292225 970.569897 0.8769 0.00042643 0.22251 0.00010821 1.0994 0.00053464 486.2922216719021 54.677 0.2845 54.677 54.505 54.79 0 15 11 2 0 0 0 0.44373 1 30383 30383 19.257 2.1441 1 1168700 8311 7002 5657 5780 9678 9678 0.08343511245811897 EGLSSFGLLL 10 Unmodified _EGLSSFGLLL_ 0 0 0 REV__ENSG00000198965|ENST00000641067|OR10R2 REV__ENSG00000198965|ENST00000641067|OR10R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2903442382812 2 518.289682 1034.56481 NaN NaN NaN NaN NaN NaN NaN 72.676 1 72.676 72.176 73.176 0 0 0 0 0.48706 1 40465 40465 26.884 0 1 + 8312 24112 5658 5781 9679 9679 0.048912073832070746 EGLVALPRR 9 Unmodified _EGLVALPRR_ 0 0 0 REV__ENST00000342179.9_1_19:32897083-32897170:+|nuORF REV__ENST00000342179.9_1_19:32897083-32897170:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2821044921875 2 505.808908 1009.60326 -0.60233 -0.00030466 1.2967 0.0006559 0.69441 0.00035124 505.8097457410097 37.274 0.28981 37.003 36.846 37.136 -0.27133 13 11 2 0 0 0 0.21473 1 19639 19639 4.3292 1.7518 1 1389700 + 8313 25716 5659 5782 9680 9680 0.098845578083683 EGLVGSQEPY 10 Unmodified _EGLVGSQEPY_ 0 0 0 REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7568969726562 2 539.756204 1077.49785 1.0739 0.00057967 -0.35751 -0.00019297 0.71643 0.0003867 539.7558823806611 21.524 0.27969 18.789 18.676 18.955 -2.7348 38 20 2 0 0 0 0.60623 1 11601 11601 10.824 0 1 6376900 + 8314 27809 5660 5783 9681 9681 -0.03779447898568833 EGNCFVAFRLF 11 Unmodified _EGNCFVAFRLF_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8827209472656 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 49.83 1 49.781 49.281 50.281 -0.048824 0 0 0 0.93933 1 26938 26938 1.2148 0 1 + 8315 24033 5661 5784 9682 9682 -0.016068539630396117 EGNEAQVCYF 10 Unmodified _EGNEAQVCYF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1622009277344 3 387.162335 1158.46517 0.07062 2.7341E-05 -0.92757 -0.00035912 -0.85695 -0.00033178 387.1621333727092 35.947 0.19579 35.947 35.836 36.032 0 15 9 2 0 0 0 0.68719 1 19040 19040 2.086 0.17963 1 3568300 8316 2877 5662 5785 9683 9683 -0.10771978293064421 EGNEAQVCYF 10 Unmodified _EGNEAQVCYF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 387.162335 1158.46517 1.162 0.0004499 -0.61976 -0.00023995 0.54228 0.00020995 387.1622423160522 40.592 0.24256 36.063 35.952 36.195 -4.5294 0.057976 0.00019347 NaN 2.086 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 7511400 8317 2877 5662 5785 -0.10771978293064421 EGNIKLPLLR 10 Unmodified _EGNIKLPLLR_ 0 0 0 ENST00000305454.7_1_8:67428410-67428662:+|nuORF ENST00000305454.7_1_8:67428410-67428662:+|nuORF ENST00000305454.7_1_8:67428410-67428662:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.8775024414062 3 384.908157 1151.70264 1.0966 0.00042208 -1.9615 -0.00075501 -0.86494 -0.00033292 385.2415609456508 42.243 0.083942 37.559 37.508 37.592 -4.6846 7 5 2 0 0 0 0.23966 1 25476 25476 3.3196 0.24738 1 4520100 8318 11617 5663 5786 9684 9684 0.1328595570246307 EGNIPLEDF 9 Unmodified _EGNIPLEDF_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2449951171875 2 517.245472 1032.47639 0.30127 0.00015583 -0.3346 -0.00017307 -0.033333 -1.7241E-05 517.245322732991 39.758 0.36214 39.758 39.53 39.892 0 41 17 3 0 0 0 0.12424 1 21293 21293 30.637 3.7529 1 5485100 + 8319 18801 5664 5787 9685 9685 -0.0385483292727713 EGNIPLEDF 9 Unmodified _EGNIPLEDF_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.245472 1032.47639 0.30127 0.00015583 -0.3346 -0.00017307 -0.033333 -1.7241E-05 517.245322732991 39.758 0.36214 39.758 39.53 39.892 0 0 0 NaN 30.637 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5485100 + 8320 18801 5664 5787 -0.0385483292727713 EGNMPSAMAF 10 Unmodified _EGNMPSAMAF_ 0 0 0 REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.1506042480469 3 352.14926 1053.42595 NaN NaN NaN NaN NaN NaN NaN 101.41 1 95.237 94.737 95.737 -6.1757 0 0 0 0.91523 1 68039 68039 3.8763 0.28927 1 + 8321 28966 5665 5788 9686 9686 -0.09862401848295121 EGNNQVSPSS 10 Unmodified _EGNNQVSPSS_ 0 0 0 ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4 ENSG00000215041|ENST00000399464|NEURL4 ENSG00000215041|ENST00000399464|NEURL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7250671386719 2 509.725435 1017.43632 0.19302 9.8387E-05 -0.76091 -0.00038786 -0.56789 -0.00028947 509.72513120939874 52.708 0.37288 52.256 52.065 52.438 -0.45173 56 18 4 0 0 0 0.67033 1 28441 28441 6.2058 0.47393 1 14859000 8322 10518 5666 5789 9687 9687 -0.07170379597835108 EGPCRRRV 8 Unmodified _EGPCRRRV_ 0 0 0 REV__ENST00000463765.1_1_9:139887895-139888254:+|nuORF REV__ENST00000463765.1_1_9:139887895-139888254:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2250366210938 2 486.761435 971.508317 0.15575 7.5815E-05 1.8118 0.00088192 1.9676 0.00095773 486.76201107534865 38.186 0.24152 37.915 37.822 38.064 -0.27133 14 10 2 0 0 0 8.7369 1 20102 20102 2.5775 0 1 282410 + 8323 20946 5667 5790 9688 9688 0.02142301065543961 EGPCRRRV 8 Unmodified _EGPCRRRV_ 0 0 0 REV__ENST00000463765.1_1_9:139887895-139888254:+|nuORF REV__ENST00000463765.1_1_9:139887895-139888254:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 486.761435 971.508317 1.073 0.00052229 -1.2788 -0.00062248 -0.20584 -0.00010019 486.7606432817251 42.544 0.27605 37.859 37.779 38.055 -4.6846 -0.027858 -0.00051783 NaN 2.5775 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 14081000 + 8324 20946 5667 5790 0.02142301065543961 EGPCWCVDAQG 11 Unmodified _EGPCWCVDAQG_ 0 0 0 nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG nc|ENSG00000042832|P01266-2|TG nc|ENSG00000042832|P01266-2|TG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8192749023438 3 388.819803 1163.43758 0.25388 9.8715E-05 -1.3195 -0.00051305 -1.0656 -0.00041433 388.8192430519447 52.978 0.34233 52.978 52.798 53.141 0 57 16 5 0 0 0 0.71341 1 29302 29302 1.2148 0.14337 1 5039600 8325 666 5668 5791 9689 9689 -0.13760204824984612 EGPDLPNID 9 Unmodified _EGPDLPNID_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2296447753906 2 485.229822 968.445091 NaN NaN NaN NaN NaN NaN NaN 70.625 1 70.148 69.648 70.648 -0.47735 0 0 0 0.82739 1 38640 38640 4.3292 0 1 + 8326 29885 5669 5792 9690 9690 -0.04039405961395914 EGPEGLKLI 9 Unmodified _EGPEGLKLI_ 0 0 0 ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L ENSG00000152642|ENST00000282541|GPD1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2789611816406 2 478.276575 954.538597 0.37264 0.00017822 1.1309 0.0005409 1.5036 0.00071912 478.277363584872 48.071 0.18988 48.071 47.959 48.149 0 20 9 3 0 0 0 0.015445 1 26349 26349 68.081 22.06 1 5231800 8327 6204 5670 5793 9691 9691 0.0595093821170849 EGPELNHAF 9 Unmodified _EGPELNHAF_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2376708984375 2 507.237981 1012.46141 -0.26795 -0.00013592 0.57284 0.00029057 0.30489 0.00015465 507.2380967372459 15.947 0.23379 15.947 15.76 15.994 0 83 55 2 0 0 0 0.43463 1 7699 7699 10.824 2.9138 1 964640 8328 3705 5671 5794 9692 9692 -0.044322800046188604 EGPELNHAF 9 Unmodified _EGPELNHAF_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2382202148438 2 507.237981 1012.46141 -0.070504 -3.5762E-05 0.23576 0.00011959 0.16526 8.3825E-05 507.2381107685363 24.778 0.28008 24.778 24.624 24.904 0 23 15 2 0 0 0 0.25681 1 12642 12642 19.257 8.4331 1 1948900 8329 3705 5671 5794 9693 9693 -0.044322800046188604 EGPLAGLGR 9 Unmodified _EGPLAGLGR_ 0 0 0 nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2451477050781 2 435.245609 868.476666 0.80836 0.00035183 -0.9908 -0.00043124 -0.18244 -7.9408E-05 435.2451263405433 43.263 0.4203 38.498 38.288 38.709 -4.7648 47 29 2 0 0 0 0.070838 1 26293 26293 39.957 1.8061 1 21715000 8330 16368 5672 5795 9694 9694 0.03716631583245089 EGPLAPIFT 9 Unmodified _EGPLAPIFT_ 0 0 0 REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5048217773438 1 944.50876 943.501483 0.40573 0.00038322 4.0643 0.0038388 4.4701 0.004222 944.5126738419658 87.033 0.16606 86.529 86.443 86.609 -0.50318 10 6 2 0 0 0 0.21564 1 47577 47577 3.9444 1.6417 1 237370 + 8331 27422 5673 5796 9695 9695 0.027472666659718925 EGPNRSCFF 9 Unmodified _EGPNRSCFF_ 0 0 0 REV__ENST00000548760.2_1_12:98908801-98908960:-|nuORF REV__ENST00000548760.2_1_12:98908801-98908960:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.57861328125 2 528.732009 1055.44946 0.39956 0.00021126 0.50679 0.00026796 0.90635 0.00047922 528.7324567507416 71.209 0.51509 70.731 70.483 70.998 -0.47736 89 22 5 0 0 0 0.18882 1 38938 38938 15.847 4.2069 1 11452000 + 8332 28688 5674 5797 9696 9696 -0.07604220019447894 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2567138671875 2 562.256371 1122.49819 0.70558 0.00039672 -0.054042 -3.0386E-05 0.65154 0.00036633 562.2563945613412 50.841 0.4263 50.427 50.214 50.64 -0.41351 76 20 5 0 0 0 0.074936 1 27437 27437 52.268 6.5687 1 72104000 + 8333 23447 5675 5798 9697 9697 -0.058160281787195345 EGPTHSTFTF 10 Unmodified _EGPTHSTFTF_ 0 0 0 REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.25732421875 2 562.256371 1122.49819 1.5092 0.00084855 -0.25251 -0.00014198 1.2567 0.00070658 562.2563067797549 50.501 0.30403 50.45 50.268 50.573 -0.050949 34 14 3 0 0 0 0.11755 1 27286 27286 43.858 5.6827 1 4483300 + 8334 23447 5675 5798 9698 9698 -0.058160281787195345 EGQEQFTVIVF 11 Unmodified _EGQEQFTVIVF_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S;REV__nc|ENSG00000157388|Q01668-3|CACNA1D;REV__nc|ENSG00000151067|Q13936-2|CACNA1C REV__ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8276977539062 2 648.82716 1295.63977 1.005 0.00065206 0.3263 0.00021171 1.3313 0.00086377 648.8269073074296 93.934 1.1268 87.758 87.318 88.445 -6.1757 214 65 4 0 0 0 0.557 1 62222 62222 17.113 7.039 1 101800000 + 8335 17689;21379;29702 5676 5799 9699 9699 0.003773451237293557 EGQFNEDGSF 10 Unmodified _EGQFNEDGSF_ 0 0 0 ENST00000495396.5_1_1:204956439-204985664:+|nuORF;nc|ENSG00000163531|O94856-4|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-7|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856|NFASC ENST00000495396.5_1_1:204956439-204985664:+|nuORF ENST00000495396.5_1_1:204956439-204985664:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2271728515625 2 565.225268 1128.43598 NaN NaN NaN NaN NaN NaN NaN 73.385 1 73.385 72.885 73.885 0 0 0 0 0.7417 1 40854 40854 14.838 3.198 1 8336 7012 5677 5800 9700 9700 -0.12309799317722536 EGQFVDSYD 9 Unmodified _EGQFVDSYD_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2183227539062 2 530.216911 1058.41927 -0.3469 -0.00018393 2.7283 0.0014466 2.3814 0.0012626 530.2179603786174 34.068 0.22712 34.068 33.947 34.175 0 19 11 2 0 0 0 0.41742 1 17905 17905 11.64 3.047 1 5993500 8337 2444 5678 5801 9701 9701 -0.10760300203651241 EGQPAAPLAL 10 Unmodified _EGQPAAPLAL_ 0 0 0 REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2328491210938 2 483.766374 965.518196 0.0081875 3.9608E-06 -0.25125 -0.00012154 -0.24306 -0.00011758 483.7661177179697 56.373 0.32119 56.373 56.265 56.586 0 31 14 3 0 0 0 0.1579 1 31432 31432 39.95 10.868 1 5955600 + 8338 25345 5679 5802 9702 9702 0.03405767551885219 EGQYCSQLRE 10 Unmodified _EGQYCSQLRE_ 0 0 0 REV__ENSG00000076356|ENST00000367033|PLXNA2;REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF REV__ENSG00000076356|ENST00000367033|PLXNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8496398925781 3 404.848638 1211.52409 -0.5289 -0.00021413 1.1398 0.00046147 0.61094 0.00024734 404.8489985964498 19.576 0.12022 19.576 19.508 19.628 0 34 16 3 0 0 0 0.6966 1 9776 9776 1.5923 0 1 961910 + 8339 17589;27309 5680 5803 9703 9703 -0.07321501998740132 EGRAHRIYH 9 Unmodified _EGRAHRIYH_ 0 0 0 REV__ENSG00000124444|ENST00000336564|ZNF576 REV__ENSG00000124444|ENST00000336564|ZNF576 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.19677734375 3 380.200334 1137.57917 0.76838 0.00029214 -3.5406 -0.0013461 -2.7722 -0.001054 380.1964248877127 22.745 0.69185 19.966 19.613 20.305 -2.7784 177 45 6 0 0 0 0.43515 1 12357 12357 10.8 5.752 1 317640000 + 8340 19445 5681 5804 9704 9704 0.015887173746932604 EGRLRAAYNL 10 Unmodified _EGRLRAAYNL_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000546964.5_1_12:48513149-48528944:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8191528320312 2 581.820004 1161.62546 0.54247 0.00031562 -1.0893 -0.00063379 -0.54686 -0.00031817 581.819104874371 46.903 0.34469 41.822 41.645 41.99 -5.0805 89 48 2 0 0 0 0.27276 1 29079 29079 29.082 2.8134 1 51400000 8341 6196 5682 5805 9705 9705 0.051107374861203425 EGRQQDLLI 9 Unmodified _EGRQQDLLI_ 0 0 0 nc|ENSG00000128656|P15882-2|CHN1 nc|ENSG00000128656|P15882-2|CHN1 nc|ENSG00000128656|P15882-2|CHN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2928466796875 2 536.293288 1070.57202 0.48984 0.0002627 -0.72352 -0.00038802 -0.23367 -0.00012532 536.2926815709907 66.397 0.65331 60.221 60.045 60.698 -6.1757 80 36 3 0 0 0 0.07916 1 43171 43171 37.974 1.847 1 75613000 8342 16180 5683 5806 9706 9706 0.039559399836207376 EGRWHEDM 8 Unmodified _EGRWHEDM_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7196655273438 2 530.219266 1058.42398 -0.26282 -0.00013935 -1.5435 -0.00081839 -1.8063 -0.00095774 530.2183657065395 33.207 0.29656 33.207 33.068 33.365 0 24 14 2 0 0 0 0.80311 1 17364 17364 4.756 0.42677 1 3007700 + 8343 19188 5684 5807 9707 9707 -0.10289694541870631 EGSPIKVTL 9 Unmodified _EGSPIKVTL_ 0 0 0 nc|ENSG00000181163|P06748-2|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;ENSG00000181163|ENST00000296930|NPM1 nc|ENSG00000181163|P06748-2|NPM1 nc|ENSG00000181163|P06748-2|NPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2781066894531 2 472.276575 942.538597 0.88996 0.00042031 0.3859 0.00018225 1.2759 0.00060256 472.2766874244088 51.206 0.27625 51.206 51.05 51.326 0 28 12 3 0 0 0 0.020973 1 28242 28242 62.573 26.446 1 8013900 8344 16426 5685 5808 9708 9708 0.06502938211713172 EGSPIKVTL 9 Unmodified _EGSPIKVTL_ 0 0 0 nc|ENSG00000181163|P06748-2|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;ENSG00000181163|ENST00000296930|NPM1 nc|ENSG00000181163|P06748-2|NPM1 nc|ENSG00000181163|P06748-2|NPM1 MSMS AL20221201_MKP_PDAC_01 4 472.2764587402344 2 472.276575 942.538597 NaN NaN NaN NaN NaN NaN NaN 57.35 1 51.322 50.822 51.822 -6.0275 0 0 0 0.035688 1 36676 36676 63.961 33.324 1 8345 16426 5685 5808 9709 9709 0.06502938211713172 EGSPSIYFSL 10 Unmodified _EGSPSIYFSL_ 0 0 0 REV__ENSG00000151490|ENST00000281171|PTPRO REV__ENSG00000151490|ENST00000281171|PTPRO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7492065429688 2 550.268947 1098.52334 0.0051885 2.8551E-06 -2.0366 -0.0011207 -2.0314 -0.0011178 550.2672889141489 69.416 0.12347 68.937 68.851 68.974 -0.47903 7 4 2 0 0 0 0.23227 1 37932 37932 10.824 4.6181 1 875480 + 8346 21070 5686 5809 9710 9710 -0.021979733761327225 EGSRSIEEF 9 Unmodified _EGSRSIEEF_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.1665649414062 3 351.833094 1052.47745 NaN NaN NaN NaN NaN NaN NaN 85.51 1 85.008 84.508 85.508 -0.5015 0 0 0 0.7453 1 46797 46797 4.897 0 1 + 8347 17517 5687 5810 9711 9711 -0.04668618558389426 EGSSENLYSI 10 Unmodified _EGSSENLYSI_ 0 0 0 REV__ENSG00000163257|ENST00000382247|DCAF16 REV__ENSG00000163257|ENST00000382247|DCAF16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7492065429688 2 549.751118 1097.48768 NaN NaN NaN NaN NaN NaN NaN 69.389 1 68.91 68.41 69.41 -0.47903 0 0 0 0.76313 1 37932 37932 13.906 1.3745 1 + 8348 21740 5688 5811 9712 9712 -0.05716055623815919 EGTARGIVVY 10 Unmodified _EGTARGIVVY_ 0 0 0 nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MSMS AL20221201_MKP_PDAC_01 4 532.7919311523438 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 50.118 1 44.579 44.079 45.079 -5.5391 0 0 0 0.41201 1 31393 31393 30.637 4.3684 1 8349 6989 5689 5812 9713 9713 0.03696841471969492 EGTFPPAGTL 10 Unmodified _EGTFPPAGTL_ 0 0 0 REV__ENST00000472940.5_1_17:58008327-58013674:+|nuORF REV__ENST00000472940.5_1_17:58008327-58013674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.4932250976562 1 989.493838 988.486562 0.014562 1.4409E-05 0.2054 0.00020325 0.21997 0.00021765 989.4943409179695 90.555 0.32758 90.555 90.437 90.764 0 32 15 3 0 0 0 0.67033 2 50072 50072;50167 6.2058 2.2614 1 805730 + 8350 18606 5690 5813 9714;9715 9714 -0.00814225202043417 EGTHIRMPRVF 11 Unmodified _EGTHIRMPRVF_ 0 0 0 REV__ENSG00000174255|ENST00000482457|ZNF80 REV__ENSG00000174255|ENST00000482457|ZNF80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.8565673828125 2 671.856064 1341.69757 0.49979 0.00033579 -0.28292 -0.00019008 0.21687 0.0001457 671.8558949847662 84.517 0.6992 84.018 83.645 84.344 -0.49961 55 31 2 0 0 0 0.71618 2 46122 46122;46243 2.7352 1.0826 1 747020 + 8351 22780 5691 5814 9716;9717 9716 0.04039328568160272 EGTHIRRHVY 10 Unmodified _EGTHIRRHVY_ 0 0 0 REV__nc|ENSG00000182903|Q8TF20|ZNF721 REV__nc|ENSG00000182903|Q8TF20|ZNF721 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.8035278320312 2 634.336353 1266.65815 0.042256 2.6805E-05 -3.2203 -0.0020428 -3.1781 -0.002016 634.3338102700069 55.012 0.10888 55.012 54.968 55.077 0 5 4 2 0 0 0 0.23634 1 30568 30568 3.5965 0 1 443610 + 8352 23306 5692 5815 9718 9718 0.03548944608974125 EGTHNQSDE 9 Unmodified _EGTHNQSDE_ 0 0 0 REV__ENSG00000174749|ENST00000309733|FAM241A REV__ENSG00000174749|ENST00000309733|FAM241A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2644958496094 2 508.699417 1015.38428 0.34028 0.0001731 -3.5579 -0.0018099 -3.2176 -0.0016368 509.19824218529004 37.312 0.14983 37.312 37.219 37.369 0 10 7 2 0 0 0 0.19891 1 19855 19855 11.64 0 1 875470 + 8353 22815 5693 5816 9719 9719 -0.12279543011607075 EGTTPNYIF 9 Unmodified _EGTTPNYIF_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2479248046875 2 521.248015 1040.48148 0.98444 0.00051314 -0.79397 -0.00041386 0.19047 9.9284E-05 521.2475593489463 51.198 0.26241 51.198 51.085 51.348 0 22 11 2 0 0 0 0.10734 1 28240 28240 32.305 12.866 1 13103000 + 8354 17455 5694 5817 9720 9720 -0.03714529064677663 EGTTPNYIF 9 Unmodified _EGTTPNYIF_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2485961914062 2 521.248015 1040.48148 1.0428 0.00054356 -1.0395 -0.00054182 0.0033377 1.7398E-06 521.2478954355297 59.381 0.47561 53.266 53.06 53.536 -6.1147 67 25 3 0 0 0 0.23158 1 38198 38198 20.454 3.5113 1 77041000 + 8355 17455 5694 5817 9721 9721 -0.03714529064677663 EGTTPNYIF 9 Unmodified _EGTTPNYIF_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 521.248015 1040.48148 0.98444 0.00051314 -0.79397 -0.00041386 0.19047 9.9284E-05 521.2475593489463 51.198 0.26241 51.198 51.085 51.348 0 -0.093881 -0.00014886 NaN 32.305 22 11 2 NaN NaN NaN NaN 0 NaN NaN 0 13103000 + 8356 17455 5694 5817 -0.03714529064677663 EGTTPNYIFL 10 Unmodified _EGTTPNYIFL_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7900390625 2 577.790047 1153.56554 0.41411 0.00023927 -0.45409 -0.00026237 -0.039975 -2.3097E-05 577.7898331217327 68.661 0.34508 68.18 68.031 68.376 -0.48071 43 15 3 0 0 0 0.46514 1 37514 37514 18.146 1.2041 1 8592700 + 8357 17455 5695 5818 9722 9722 -0.0050999796776523 EGTTPNYIFL 10 Unmodified _EGTTPNYIFL_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7903442382812 2 577.790047 1153.56554 0.8035 0.00046426 -0.13124 -7.5831E-05 0.67226 0.00038843 577.7898043495851 76.08 0.53035 69.904 69.634 70.164 -6.1757 48 28 2 0 0 0 0.035736 1 49700 49700 65.235 31.133 1 34261000 + 8358 17455 5695 5818 9723 9723 -0.0050999796776523 EGTTPNYIFL 10 Unmodified _EGTTPNYIFL_ 0 0 0 REV__ENSG00000069849|ENST00000286371|ATP1B3 REV__ENSG00000069849|ENST00000286371|ATP1B3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.7608032226562 2 577.790047 1153.56554 0.8035 0.00046426 -0.13124 -7.5831E-05 0.67226 0.00038843 577.7898043495851 76.08 0.53035 69.904 69.634 70.164 -6.1757 48 28 2 0 0 0 0.18175 1 49900 49900 27.629 0 1 34261000 + 8359 17455 5695 5818 9724 9724 -0.0050999796776523 EGTVDQFQFWM 11 Unmodified _EGTVDQFQFWM_ 0 0 0 REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.3043823242188 2 694.302995 1386.59144 0.25322 0.00017581 1.819 0.001263 2.0723 0.0014388 694.3041382319626 49.957 0.24186 49.957 49.812 50.053 0 26 10 4 0 0 0 0.44182 1 27490 27490 19.362 7.1213 1 5643500 + 8360 16910 5696 5819 9725 9725 -0.08639471787796538 EGTVDQFQFWM 11 Unmodified _EGTVDQFQFWM_ 0 0 0 REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 694.302995 1386.59144 0.25322 0.00017581 1.819 0.001263 2.0723 0.0014388 694.3041382319626 49.957 0.24186 49.957 49.812 50.053 0 -0.052725 0.00013178 NaN 19.362 26 10 4 NaN NaN NaN NaN 0 NaN NaN 0 5643500 + 8361 16910 5696 5819 -0.08639471787796538 EGTVDQFQFWM 11 Unmodified _EGTVDQFQFWM_ 0 0 0 REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant REV__DOCK4|p.R905W|1|0.15|ENSG00000128512|chr7:111844786-111844786|G/A|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 694.302995 1386.59144 0.79805 0.00055409 1.4586 0.0010127 2.2567 0.0015668 694.3033281777608 50.476 0.2003 50.062 49.992 50.192 -0.41351 0.052725 -0.00036869 NaN 19.362 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2357100 + 8362 16910 5696 5819 -0.08639471787796538 EGTWNSTSF 9 Unmodified _EGTWNSTSF_ 0 0 0 ENST00000483658.1_1_3:123881162-123881255:+|nuORF ENST00000483658.1_1_3:123881162-123881255:+|nuORF ENST00000483658.1_1_3:123881162-123881255:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7186889648438 2 514.719621 1027.42469 NaN NaN NaN NaN NaN NaN NaN 73.873 1 73.397 72.897 73.897 -0.47588 0 0 0 0.7453 1 40431 40431 7.9102 2.1497 1 8363 14135 5697 5820 9726 9726 -0.08792576621203807 EGTYGIVY 8 Unmodified _EGTYGIVY_ 0 0 0 ENST00000505733.5_1_16:89753118-89759778:+|nuORF;ENSG00000185324|ENST00000353379|CDK10 ENST00000505733.5_1_16:89753118-89759778:+|nuORF ENST00000505733.5_1_16:89753118-89759778:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2184753417969 2 451.218726 900.422899 NaN NaN NaN NaN NaN NaN NaN 78.725 1 78.725 78.225 79.225 0 0 0 0 0.97444 1 43742 43742 2.5775 0 1 8364 9362 5698 5821 9727 9727 -0.03129585639146626 EGTYRNLIF 9 Unmodified _EGTYRNLIF_ 0 0 0 REV__ENSG00000175065|ENST00000308128|DSG4 REV__ENSG00000175065|ENST00000308128|DSG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7896728515625 2 556.790381 1111.56621 0.76563 0.00042629 -4.4707 -0.0024893 -3.7051 -0.002063 556.7881072337464 53.705 0.27251 53.705 53.627 53.899 0 21 12 2 0 0 0 0.047196 1 29793 29793 46.021 6.0636 1 5915800 + 8365 22835 5699 5822 9728 9728 0.014888414719507637 EGTYWYLF 8 Unmodified _EGTYWYLF_ 0 0 0 REV__ENST00000447235.1_1_9:21811679-21811823:-|nuORF REV__ENST00000447235.1_1_9:21811679-21811823:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.744873046875 2 539.74765 1077.48075 NaN NaN NaN NaN NaN NaN NaN 57.341 1 51.313 50.813 51.813 -6.0275 0 0 0 0.59893 1 36671 36671 34.187 3.5508 1 + 8366 27157 5700 5823 9729 9729 -0.054893237137321194 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.8220825195312 2 705.320665 1408.62678 0.73165 0.00051605 -0.52149 -0.00036782 0.21017 0.00014824 705.8219968550708 54.479 0.26583 54.479 54.375 54.641 0 21 11 3 0 0 0 0.71618 1 30276 30276 2.7352 1.5419 1 1357700 8367 3344 5701 5824 9730 9730 -0.06119132531625837 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.3206787109375 2 705.320665 1408.62678 0.16853 0.00011887 -0.29271 -0.00020645 -0.12417 -8.7581E-05 705.3201365993953 67.33 0.30624 67.33 67.153 67.459 0 36 12 4 0 0 0 0.7326 1 37602 37602 1.1933 0 1 3685600 8368 3344 5701 5824 9731 9731 -0.06119132531625837 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.3203125 2 705.320665 1408.62678 0.47814 0.00033725 0.46257 0.00032626 0.94072 0.00066351 705.3208507671155 52.21 0.27848 51.777 51.631 51.909 -0.43367 40 13 4 0 0 0 0.65846 1 28167 28167 8.1555 5.1603 1 5065500 8369 3344 5701 5824 9732 9732 -0.06119132531625837 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.3218383789062 2 705.320665 1408.62678 0.55275 0.00038987 -1.8517 -0.001306 -1.2989 -0.00091618 705.3196284240113 67.997 0.33777 67.514 67.299 67.637 -0.48219 45 15 4 0 0 0 0.6889 1 37099 37099 5.2969 2.3016 1 7143500 8370 3344 5701 5824 9733 9733 -0.06119132531625837 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.31884765625 2 705.320665 1408.62678 NaN NaN NaN NaN NaN NaN NaN 56.607 1 56.121 55.621 56.621 -0.48554 0 0 0 0.86932 1 30746 30746 8.7454 0.58988 1 8371 3344 5701 5824 9734 9734 -0.06119132531625837 EGVFKMCYNYR 11 Unmodified _EGVFKMCYNYR_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 705.320665 1408.62678 0.30422 0.00021457 0.53597 0.00037803 0.84019 0.0005926 705.3208215506512 51.505 0.27391 51.505 51.348 51.622 0 -0.13576 8.8197E-05 NaN 8.1555 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2501700 8372 3344 5701 5824 -0.06119132531625837 EGVIEFVSY 9 Unmodified _EGVIEFVSY_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7583618164062 2 521.758215 1041.50188 0.65885 0.00034376 -1.2669 -0.00066099 -0.60801 -0.00031724 521.7581787891121 74.394 0.41777 74.394 74.102 74.52 0 28 19 2 0 0 0 0.095405 1 41365 41365 34.102 24.755 1 1539200 8373 3215 5702 5825 9735 9735 -0.01721358404847706 EGVIEFVSY 9 Unmodified _EGVIEFVSY_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MSMS AL20221201_MKP_PDAC_01 4 521.7588500976562 2 521.758215 1041.50188 NaN NaN NaN NaN NaN NaN NaN 82.663 1 76.487 75.987 76.987 -6.1757 0 0 0 0.080768 1 54310 54310 48.346 18.121 1 8374 3215 5702 5825 9736 9736 -0.01721358404847706 EGVKKRQGL 9 Unmodified _EGVKKRQGL_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.806640625 2 507.806365 1013.59818 -0.57077 -0.00028984 0.71382 0.00036248 0.14306 7.2644E-05 507.8067953065978 33.235 0.23692 33.075 32.959 33.196 -0.15919 15 9 2 0 0 0 0.48152 1 17331 17331 8.5933 0 1 1976800 8375 7381 5703 5826 9737 9737 0.09192253945752782 EGVLASFFNS 10 Unmodified _EGVLASFFNS_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;nc|ENSG00000135720|O43237-2|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2821044921875 2 535.761289 1069.50803 0.66714 0.00035743 -1.1424 -0.00061207 -0.47529 -0.00025464 535.7606631966523 92.566 0.40692 86.39 86.235 86.642 -6.1757 42 24 2 0 0 0 0.19561 1 61142 61142 30.637 16.73 1 10803000 8376 4734 5704 5827 9738 9738 -0.023948401733377978 EGVTATVSL 9 Unmodified _EGVTATVSL_ 0 0 0 REV__ENSG00000069020|ENST00000403625|MAST4 REV__ENSG00000069020|ENST00000403625|MAST4 MSMS AL20221201_MKP_PDAC_01 4 438.7377014160156 2 438.737283 875.460012 NaN NaN NaN NaN NaN NaN NaN 59.708 1 53.593 53.093 54.093 -6.1147 0 0 0 0.08978 1 38358 38358 46.021 1.6139 1 + 8377 17446 5705 5828 9739 9739 0.01730085906626755 EGVTMNEFSVK 11 Unmodified _EGVTMNEFSVK_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2539672851562 2 620.797546 1239.58054 0.33045 0.00020514 -2.2543 -0.0013994 -1.9238 -0.0011943 620.7959281176602 55.201 0.2722 54.723 54.548 54.82 -0.47798 21 12 2 0 0 0 0.27103 1 29965 29965 18.373 2.224 1 2267900 + 8378 19593 5706 5829 9740 9740 -0.02966874162075328 EGVWWGYRNYE 11 Unmodified _EGVWWGYRNYE_ 0 0 0 REV__ENSG00000005020|ENST00000345317|SKAP2 REV__ENSG00000005020|ENST00000345317|SKAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 729.8275146484375 2 729.825483 1457.63641 NaN NaN NaN NaN NaN NaN NaN 56.107 1 55.621 55.121 56.121 -0.48554 0 0 0 0.73356 1 30454 30454 15.248 10.351 1 + 8379 16960 5707 5830 9741 9741 -0.07409904930250377 EGWARKPTGGI 11 Unmodified _EGWARKPTGGI_ 0 0 0 ENST00000420833.5_1_7:12255389-12258117:+|nuORF ENST00000420833.5_1_7:12255389-12258117:+|nuORF ENST00000420833.5_1_7:12255389-12258117:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.2114562988281 3 391.212128 1170.61456 NaN NaN NaN NaN NaN NaN NaN 80.733 1 74.558 74.058 75.058 -6.1757 0 0 0 0.93669 1 52970 52970 2.2527 0.51045 1 8380 13104 5708 5831 9742 9742 0.03607335111860266 EGWKDAGYEY 10 Unmodified _EGWKDAGYEY_ 0 0 0 ENST00000480513.5_1_X:100653884-100662798:-|nuORF;ENST00000486121.5_1_X:100655741-100662798:-|nuORF;ENST00000479445.1_1_X:100656533-100662864:-|nuORF;ENSG00000102393|ENST00000218516|GLA ENST00000480513.5_1_X:100653884-100662798:-|nuORF ENST00000480513.5_1_X:100653884-100662798:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2599487304688 2 609.259111 1216.50367 0.46366 0.00028249 0.13477 8.2107E-05 0.59843 0.0003646 609.2591338090965 44.486 0.31805 39.634 39.471 39.789 -4.852 27 23 2 0 0 0 0.084474 1 27216 27216 65.474 36.392 1 11904000 8381 2043 5709 5832 9743 9743 -0.0959234938688951 EGWNEKFGEAY 11 Unmodified _EGWNEKFGEAY_ 0 0 0 ENSG00000163945|ENST00000389851|UVSSA ENSG00000163945|ENST00000389851|UVSSA ENSG00000163945|ENST00000389851|UVSSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.2921752929688 2 665.290942 1328.56733 0.90879 0.00060461 -0.56398 -0.00037521 0.3448 0.0002294 665.2900935713706 54.022 0.24568 48.157 48.02 48.266 -5.8653 21 13 2 0 0 0 3.8575E-11 1 34192 34192 124.95 86.777 1 11219000 8382 7102 5710 5833 9744 9744 -0.08380988949784296 EGWNEKFGEAY 11 Unmodified _EGWNEKFGEAY_ 0 0 0 ENSG00000163945|ENST00000389851|UVSSA ENSG00000163945|ENST00000389851|UVSSA ENSG00000163945|ENST00000389851|UVSSA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 665.290942 1328.56733 0.29841 0.00019853 0.45286 0.00030128 0.75127 0.00049981 665.2910202727048 47.911 0.24108 47.911 47.81 48.051 0 -0.12262 0.00075914 NaN 124.95 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2087700 8383 7102 5710 5833 -0.08380988949784296 EGWPEVVEM 9 Unmodified _EGWPEVVEM_ 0 0 0 ENSG00000196937|ENST00000359943|FAM3C;ENST00000474082.1_1_7:120990517-120991352:-|nuORF ENSG00000196937|ENST00000359943|FAM3C ENSG00000196937|ENST00000359943|FAM3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2405395507812 2 538.241875 1074.4692 0.74033 0.00039848 -2.1105 -0.001136 -1.3702 -0.00073751 538.2402772124004 83.025 0.44041 76.85 76.624 77.065 -6.1757 47 23 3 0 0 0 0.095405 1 54618 54618 34.102 14.663 1 25220000 8384 9886 5711 5834 9745 9745 -0.06505888799347304 EGWSTGVIY 9 Unmodified _EGWSTGVIY_ 0 0 0 ENST00000586136.5_1_19:30097284-30104129:+|nuORF ENST00000586136.5_1_19:30097284-30104129:+|nuORF ENST00000586136.5_1_19:30097284-30104129:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2422180175781 2 506.242732 1010.47091 0.85865 0.00043469 -0.82718 -0.00041876 0.031467 1.593E-05 506.2419725126901 60.309 0.35731 60.309 60.137 60.494 0 33 15 3 0 0 0 0.41742 1 33618 33618 11.64 2.2929 1 2379500 8385 15617 5712 5835 9746 9746 -0.03390511719078404 EGWWHRRTHFW 11 Unmodified _EGWWHRRTHFW_ 0 0 0 ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF ENST00000322893.11_1_14:63483627-63512140:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 799.380126953125 2 799.381626 1596.7487 -0.458 -0.00036611 -0.014626 -1.1692E-05 -0.47262 -0.0003778 799.3814953613505 69.567 0.43951 69.088 68.874 69.314 -0.47903 39 18 3 0 0 0 0.30605 1 38146 38146 0 0 1 1507600 8386 11791 5713 5836 9747 9747 -0.025805863427649456 EGYHRSNHF 9 Unmodified _EGYHRSNHF_ 0 0 0 nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.756103515625 2 573.757404 1145.50025 0.63349 0.00036347 -2.5381 -0.0014563 -1.9046 -0.0010928 573.7554582301044 53.613 0.23557 53.161 53.026 53.261 -0.45173 27 11 3 0 0 0 0.30562 1 29004 29004 16.942 9.0321 1 3799200 8387 16036 5714 5837 9748 9748 -0.06667554650243801 EGYKDLAALL 10 Unmodified _EGYKDLAALL_ 0 0 0 nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1;nc|ENSG00000120868|O14727-6|APAF1 nc|ENSG00000120868|O14727-5|APAF1 nc|ENSG00000120868|O14727-5|APAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8001708984375 2 546.800414 1091.58628 0.23071 0.00012615 -0.47068 -0.00025737 -0.23997 -0.00013122 546.7998722040118 69.745 0.26479 69.745 69.598 69.863 0 17 12 2 0 0 0 0.54684 1 38871 38871 13.906 4.5229 1 1092000 8388 3547 5715 5838 9749 9749 0.04414592411899321 EGYKHYEYSRH 11 Unmodified _EGYKHYEYSRH_ 0 0 0 REV__ENSG00000242852|ENST00000397732|ZNF709 REV__ENSG00000242852|ENST00000397732|ZNF709 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 734.83203125 2 734.83384 1467.65313 0.36999 0.00027188 -0.64658 -0.00047513 -0.27659 -0.00020325 734.8332993963695 52.335 1.2678 51.901 51.285 52.553 -0.43367 191 64 6 0 0 0 0.71341 1 28058 28058 2.9952 0.26005 1 241270000 + 8389 24468 5716 5839 9750 9750 -0.06199404044309631 EGYYDRFY 8 Unmodified _EGYYDRFY_ 0 0 0 REV__ENST00000280969.9_1_5:162930152-162930257:+|nuORF REV__ENST00000280969.9_1_5:162930152-162930257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2393798828125 2 556.737814 1111.46108 0.40386 0.00022485 -0.98952 -0.0005509 -0.58565 -0.00032606 556.737556953641 64.309 0.6735 64.309 64.071 64.745 0 119 31 7 0 0 0 0.78849 1 35781 35781 9.3474 0.60203 1 61494000 + 8390 25192 5717 5840 9751 9751 -0.090196997244675 EHADQGEAPRW 11 Unmodified _EHADQGEAPRW_ 0 0 0 REV__ENSG00000196878|ENST00000356082|LAMB3 REV__ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.53369140625 3 432.530297 1294.56906 0.86457 0.00037395 -0.28954 -0.00012524 0.57502 0.00024871 432.8640577958093 28.619 0.25084 25.471 25.323 25.573 -3.1482 33 12 3 0 0 0 0.61059 1 15986 15986 5.8681 0 1 8797300 + 8391 23879 5718 5841 9752 9752 -0.06643935141210022 EHATPAGL 8 Unmodified _EHATPAGL_ 0 0 0 ENST00000301765.9_1_11:60899010-60899583:-|nuORF ENST00000301765.9_1_11:60899010-60899583:-|nuORF ENST00000301765.9_1_11:60899010-60899583:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2046813964844 2 398.20341 794.392267 NaN NaN NaN NaN NaN NaN NaN 21.022 1 21.022 20.522 21.522 0 0 0 0 0.9706 1 10610 10610 6.3541 0.59368 1 8392 11574 5719 5842 9753 9753 -0.013153192335153108 EHCKGKSDHY 10 Unmodified _EHCKGKSDHY_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8456726074219 3 401.845228 1202.51386 0.86714 0.00034846 0.79212 0.00031831 1.6593 0.00066677 401.8454145897871 49.79 0.31763 49.742 49.589 49.907 -0.048828 25 15 3 0 0 0 0.71123 1 26950 26950 0.69767 0.2894 1 1415800 8393 10105 5720 5843 9754 9754 -0.07930064933293579 EHDENETV 8 Unmodified _EHDENETV_ 0 0 0 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 972.5621948242188 1 972.390495 971.383219 0.51953 0.00050519 -2.1125 -0.0020542 -1.593 -0.001549 972.3880520780092 25.172 0.1101 25.196 25.13 25.241 0.024429 7 5 2 0 0 0 8.7369 1 13023 13023 5.7604 0 1 28211000 + 8394 29887 5721 5844 9755 9755 -0.10361757380508152 EHDLVQGSGQ 10 Unmodified _EHDLVQGSGQ_ 0 0 0 ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5;nc|ENSG00000105609|O75023-2|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20221201_MKP_PDAC_01 4 535.2740478515625 2 535.249077 1068.4836 NaN NaN NaN NaN NaN NaN NaN 76.702 1 70.526 70.026 71.026 -6.1757 0 0 0 0.49971 1 50170 50170 26.268 0.86883 1 8395 2339 5722 5845 9756 9756 -0.047901003268407294 EHDLVQGSGQ 10 Unmodified _EHDLVQGSGQ_ 0 0 0 ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5;nc|ENSG00000105609|O75023-2|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20221201_MKP_PDAC_01 4 535.2525024414062 2 535.249077 1068.4836 NaN NaN NaN NaN NaN NaN NaN 76.744 1 70.569 70.069 71.069 -6.1757 0 0 0 0.49971 1 50198 50198 26.268 3.1197 1 8396 2339 5722 5845 9757 9757 -0.047901003268407294 EHDPPHHCSR 10 Unmodified _EHDPPHHCSR_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.7597045898438 2 607.75962 1213.50469 -0.12722 -7.7317E-05 -0.14902 -9.0566E-05 -0.27623 -0.00016788 607.7595490003741 72.097 0.33617 72.097 71.883 72.219 0 26 15 2 0 0 0 0.62068 1 40097 40097 10.074 3.8681 1 1373000 8397 9628 5723 5846 9758 9758 -0.09352413499004797 EHEAHCAY 8 Unmodified _EHEAHCAY_ 0 0 0 REV__ENSG00000205339|ENST00000379719|IPO7 REV__ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.1890869140625 2 480.187434 958.360315 1.1573 0.00055571 0.32748 0.00015725 1.4848 0.00071296 480.1876645829819 50.709 0.57165 45.06 44.744 45.316 -5.649 149 35 7 0 0 0 0.80624 1 31692 31692 2.8892 0.31174 1 312790000 + 8398 24223 5724 5847 9759 9759 -0.12053054978991895 EHEAMDHPRA 10 Unmodified _EHEAMDHPRA_ 0 0 0 nc|ENSG00000159884|Q8WV48-2|CCDC107 nc|ENSG00000159884|Q8WV48-2|CCDC107 nc|ENSG00000159884|Q8WV48-2|CCDC107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.763671875 2 596.761829 1191.5091 0.43096 0.00025718 1.2258 0.00073151 1.6568 0.00098869 596.7628976171372 97.378 0.19298 97.135 97.001 97.194 -0.24277 9 8 2 0 0 0 0.66569 1 53181 53181 6.7232 2.1943 1 722920 8399 16312 5725 5848 9760 9760 -0.07898949076070494 EHEGEEEDDL 10 Unmodified _EHEGEEEDDL_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2269287109375 3 401.154562 1200.44186 1.0724 0.00043019 -0.0092108 -3.695E-06 1.0632 0.0004265 401.1544735171146 46.777 0.44389 46.744 46.572 47.016 -0.033417 29 21 2 0 0 0 0.23946 1 25143 25143 1.7423 0 1 2469200 + 8400 29974 5726 5849 9761 9761 -0.15034745596699395 EHELKLTLS 9 Unmodified _EHELKLTLS_ 0 0 0 REV__ENSG00000100888|ENST00000646647|CHD8 REV__ENSG00000100888|ENST00000646647|CHD8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.75537109375 2 535.298039 1068.58152 0.66315 0.00035498 -1.44 -0.00077085 -0.77688 -0.00041586 535.2968797047857 46.46 0.28629 46.46 46.369 46.656 0 18 12 2 0 0 0 0.19891 1 25390 25390 11.64 6.8843 1 1277900 + 8401 18112 5727 5850 9762 9762 0.04997708269138457 EHEMQNEKC 9 Unmodified _EHEMQNEKC_ 0 0 0 REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.1928405761719 3 383.155074 1146.44339 0.9388 0.00035971 -0.43711 -0.00016748 0.50169 0.00019222 383.15507075090574 27.035 0.26753 23.998 23.893 24.161 -3.0365 27 13 3 0 0 0 0.20883 1 15026 15026 2.4985 0 1 11556000 + 8402 26558 5728 5851 9763 9763 -0.12397106313278528 EHERSPLDII 10 Unmodified _EHERSPLDII_ 0 0 0 REV__nc|ENSG00000138346|P51530-3|DNA2 REV__nc|ENSG00000138346|P51530-3|DNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5469055175781 3 403.547177 1207.6197 -0.51986 -0.00020979 0.18075 7.2939E-05 -0.33911 -0.00013685 403.5472212795027 19.745 0.23242 19.745 19.616 19.849 0 54 32 2 0 0 0 0.70951 1 9944 9944 0.77653 0 1 2427800 + 8403 20322 5729 5852 9764 9764 0.024195941838115687 EHEVMPHYR 9 Unmodified _EHEVMPHYR_ 0 0 0 ENSG00000134508|ENST00000256925|CABLES1;nc|ENSG00000134508|Q8TDN4-3|CABLES1;nc|ENSG00000134508|Q8TDN4-4|CABLES1;nc|ENSG00000134508|Q8TDN4-2|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2740478515625 2 599.277115 1196.53968 0.47857 0.0002868 -3.9376 -0.0023597 -3.459 -0.0020729 599.2732464903511 36.63 0.20514 36.63 36.527 36.732 0 15 9 2 0 0 0 0.51218 1 19429 19429 6.7232 0.51738 1 2287000 8404 4615 5730 5853 9765 9765 -0.0507317069104829 EHEVMPHYR 9 Unmodified _EHEVMPHYR_ 0 0 0 ENSG00000134508|ENST00000256925|CABLES1;nc|ENSG00000134508|Q8TDN4-3|CABLES1;nc|ENSG00000134508|Q8TDN4-4|CABLES1;nc|ENSG00000134508|Q8TDN4-2|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 599.277115 1196.53968 -0.27788 -0.00016653 -5.4014 -0.0032369 -5.6793 -0.0034034 599.273627220309 36.895 0.28652 36.645 36.51 36.796 -0.2497 0.0076921 -0.00038861 NaN 6.7232 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1515900 8405 4615 5730 5853 -0.0507317069104829 EHFGIAWFTF 10 Unmodified _EHFGIAWFTF_ 0 0 0 ENSG00000156486|ENST00000287042|KCNS2 ENSG00000156486|ENST00000287042|KCNS2 ENSG00000156486|ENST00000287042|KCNS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.80126953125 2 627.800749 1253.58694 NaN NaN NaN NaN NaN NaN NaN 52.501 1 52.442 51.942 52.942 -0.058918 0 0 0 0.66657 1 28445 28445 18.146 1.0335 1 8406 6458 5731 5854 9766 9766 -0.029705681483847002 EHFHKSSMI 9 Unmodified _EHFHKSSMI_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.267333984375 2 558.268758 1114.52296 NaN NaN NaN NaN NaN NaN NaN 89.152 1 89.152 88.652 89.652 0 0 0 0 0.83049 1 49334 49334 3.9444 0 1 + 8407 29555 5732 5855 9767 9767 -0.02971671576983681 EHFNQFFIE 9 Unmodified _EHFNQFFIE_ 0 0 0 REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.1893615722656 3 404.189101 1209.54547 0.49156 0.00019868 -1.2809 -0.00051772 -0.78933 -0.00031904 404.188485295852 26.388 0.31906 23.437 23.319 23.638 -2.9511 35 16 3 0 0 0 0.5029 1 14506 14506 7.609 1.8255 1 12306000 + 8408 24495 5733 5856 9768 9768 -0.050917489077164646 EHGDPLKVKFK 11 Unmodified _EHGDPLKVKFK_ 0 0 0 REV__ENSG00000100079|ENST00000215886|LGALS2 REV__ENSG00000100079|ENST00000215886|LGALS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.3677978515625 2 649.366787 1296.71902 NaN NaN NaN NaN NaN NaN NaN 103.53 1 103.42 102.92 103.92 -0.10458 0 0 0 0.94307 1 56469 56469 0.30703 0.03801 1 + 8409 18009 5734 5857 9769 9769 0.0825303686854113 EHGDQDYIW 9 Unmodified _EHGDQDYIW_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7433471679688 2 581.743628 1161.4727 -0.13121 -7.6329E-05 -0.32905 -0.00019142 -0.46026 -0.00026775 581.7434764422952 48.327 0.42304 48.327 48.132 48.555 0 67 20 6 0 0 0 0.009483 2 26557 26449;26557 81.89 81.89 1 43350000 8410 5175 5735 5858 9770;9771 9771 -0.10157502701144949 EHGDQDYIW 9 Unmodified _EHGDQDYIW_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000550040.1_1_12:50153009-50155568:+|nuORF ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7437133789062 2 581.743628 1161.4727 1.2228 0.00071138 -0.11318 -6.5843E-05 1.1097 0.00064554 581.7436037331635 54.009 0.60184 48.143 47.883 48.485 -5.8653 97 35 4 0 0 0 0.0082353 2 34329 34198;34329 96.111 83.579 1 111900000 8411 5175 5735 5858 9772;9773 9773 -0.10157502701144949 EHGQPVESVL 10 Unmodified _EHGQPVESVL_ 0 0 0 ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;nc|ENSG00000164338|Q8TED0-2|UTP15 ENSG00000164338|ENST00000296792|UTP15 ENSG00000164338|ENST00000296792|UTP15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2525024414062 2 547.77747 1093.54039 -0.47365 -0.00025945 -1.2943 -0.00070899 -1.7679 -0.00096844 548.2782248426604 30.566 0.10471 30.566 30.503 30.607 0 5 4 2 0 0 0 0.2362 1 15893 15893 7.609 4.0125 1 480120 8412 7183 5736 5859 9774 9774 -0.0026405277033063612 EHGVALLAY 9 Unmodified _EHGVALLAY_ 0 0 0 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7614440917969 2 486.761092 971.507631 0.60246 0.00029326 1.3552 0.00065967 1.9577 0.00095293 486.7611280808339 60.571 0.65217 60.571 60.301 60.953 0 78 28 4 0 0 0 0.23158 1 33700 33700 20.454 0 1 43120000 8413 4161 5737 5860 9775 9775 0.02073784897470432 EHGVALLAY 9 Unmodified _EHGVALLAY_ 0 0 0 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.5167846679688 1 972.514908 971.507631 0.5219 0.00050755 0.95052 0.00092439 1.4724 0.0014319 972.5136448682467 60.57 0.17184 60.57 60.474 60.646 0 12 7 2 0 0 0 0.45045 1 33780 33780 10.074 0 1 450510 8414 4161 5737 5860 9776 9776 0.02073784897470432 EHGVALLAY 9 Unmodified _EHGVALLAY_ 0 0 0 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7611389160156 2 486.761092 971.507631 -0.18444 -8.9777E-05 0.16507 8.0349E-05 -0.019368 -9.4278E-06 486.7611551065579 61.097 0.34243 60.608 60.435 60.777 -0.48932 47 16 4 0 0 0 0.095405 2 33319 33224;33319 34.102 1.797 1 29928000 8415 4161 5737 5860 9777;9778 9778 0.02073784897470432 EHGVALLAY 9 Unmodified _EHGVALLAY_ 0 0 0 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 ENSG00000129744|ENST00000250693|ART1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7613525390625 2 486.761092 971.507631 0.6294 0.00030637 0.86852 0.00042276 1.4979 0.00072913 486.7612516155987 67.684 0.58139 61.509 61.255 61.837 -6.1757 94 33 4 0 0 0 0.095405 1 44256 44256 34.102 1.797 1 137440000 8416 4161 5737 5860 9779 9779 0.02073784897470432 EHHEWYLRKFE 11 Unmodified _EHHEWYLRKFE_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MSMS AL20221201_MKP_PDAC_01 4 787.380859375 2 787.380957 1572.74736 NaN NaN NaN NaN NaN NaN NaN 36.486 1 32.293 31.793 32.793 -4.1928 0 0 0 0.93893 1 21312 21312 3.2813 0.28607 1 8417 5705 5738 5861 9780 9780 -0.016102652221889002 EHHKANYQTL 10 Unmodified _EHHKANYQTL_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83;nc|ENSG00000173588|Q9Y592-2|CEP83;ENST00000551596.1_1_12:94796783-94806266:-|nuORF ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2081298828125 3 414.207155 1239.59963 -0.023615 -9.7815E-06 3.4232 0.0014179 3.3996 0.0014081 414.20826320757 39.347 0.20421 39.06 38.981 39.185 -0.28687 14 9 2 0 0 0 0.67033 1 20778 20778 3.3196 1.4133 1 1873200 8418 8344 5739 5862 9781 9781 -0.010581567561530392 EHHKGDEKTM 10 Unmodified _EHHKGDEKTM_ 0 0 0 REV__ENSG00000112893|ENST00000261483|MAN2A1 REV__ENSG00000112893|ENST00000261483|MAN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5214233398438 3 404.520633 1210.54007 -0.36416 -0.00014731 0.83184 0.0003365 0.46767 0.00018918 404.5210539074072 40.73 0.19271 40.73 40.565 40.758 0 18 10 2 0 0 0 0.60623 1 21859 21859 6.1918 0 1 3429000 + 8419 18842 5740 5863 9782 9782 -0.05677795761857851 EHHKLLLQL 9 Unmodified _EHHKLLLQL_ 0 0 0 REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 377.5167541503906 3 377.560869 1129.66078 NaN NaN NaN NaN NaN NaN NaN 17.898 1 15.312 14.812 15.812 -2.5866 0 0 0 0.84564 1 9396 9396 1.0715 0 1 + 8420 26067 5741 5864 9783 9783 0.1011340001393819 EHHRQKHF 8 Unmodified _EHHRQKHF_ 0 0 0 KCNQ3|p.Q362H|1|0.39|ENSG00000184156|chr8:132172652-132172652|T/A|missense_variant KCNQ3|p.Q362H|1|0.39|ENSG00000184156|chr8:132172652-132172652|T/A|missense_variant KCNQ3|p.Q362H|1|0.39|ENSG00000184156|chr8:132172652-132172652|T/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2572631835938 2 559.783756 1117.55296 NaN NaN NaN NaN NaN NaN NaN 88.599 1 88.094 87.594 88.594 -0.50423 0 0 0 0.97444 1 48455 48455 2.3027 0.4585 1 8421 15936 5742 5865 9784 9784 -0.0011155179677189153 EHHSAVNALF 10 Unmodified _EHHSAVNALF_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7767333984375 2 562.777805 1123.54106 -0.32825 -0.00018473 -4.1651 -0.002344 -4.4934 -0.0025288 562.7759571472225 31.922 0.20266 31.922 31.82 32.023 0 15 9 2 0 0 0 0.63399 1 16645 16645 9.3831 0.78985 1 1382800 + 8422 17146 5743 5866 9785 9785 -0.01577213330642735 EHIDPAMTEH 10 Unmodified _EHIDPAMTEH_ 0 0 0 REV__nc|ENSG00000085276|Q03112-8|MECOM REV__nc|ENSG00000085276|Q03112-8|MECOM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8412780761719 3 393.841484 1178.50262 NaN NaN NaN NaN NaN NaN NaN 18.12 1 18.12 17.62 18.62 0 0 0 0 0.98914 1 8985 8985 0.77653 0 1 + 8423 17747 5744 5867 9786 9786 -0.0794888702746448 EHKEEEPV 8 Unmodified _EHKEEEPV_ 0 0 0 REV__nc|ENSG00000106443|O94880-2|PHF14 REV__nc|ENSG00000106443|O94880-2|PHF14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7718505859375 2 498.735271 995.45599 0.96454 0.00048105 2.495 0.0012444 3.4596 0.0017254 498.7361665683097 46.119 0.12059 46.119 46.044 46.164 0 8 5 2 0 0 0 8.7369 1 25205 25205 10.824 2.9138 1 1607700 + 8424 18507 5745 5868 9787 9787 -0.041920035870930406 EHKEEIENL 9 Unmodified _EHKEEIENL_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1 ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.780517578125 2 570.78021 1139.54587 -0.20563 -0.00011737 -0.27658 -0.00015787 -0.4822 -0.00027523 570.7798162724331 25.894 0.4079 25.894 25.737 26.145 0 37 19 3 0 0 0 0.54444 1 13349 13349 4.756 0 1 5428700 8425 10745 5746 5869 9788 9788 -0.018323739785273574 EHKFVAEIF 9 Unmodified _EHKFVAEIF_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.8896484375 3 373.865958 1118.57605 1.49 0.00055705 -0.93373 -0.00034909 0.55624 0.00020796 374.1995626223712 41.073 0.25293 36.465 36.371 36.624 -4.6079 22 15 2 0 0 0 0.20883 1 24570 24570 8.1555 6.9622 1 12845000 + 8426 22770 5747 5870 9789 9789 0.021500294773204587 EHKIEENE 8 Unmodified _EHKIEENE_ 0 0 0 REV__ENSG00000177994|ENST00000398634|C2orf73 REV__ENSG00000177994|ENST00000398634|C2orf73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2368774414062 2 514.238178 1026.4618 1.4632 0.00075243 -3.2024 -0.0016468 -1.7392 -0.00089437 514.2363202135664 50.369 0.24241 50.321 50.191 50.433 -0.048824 18 11 2 0 0 0 0.75262 1 27234 27234 12.532 3.1841 1 1554900 + 8427 23015 5748 5871 9790 9790 -0.050369050754397904 EHLALQVLCL 10 Unmodified _EHLALQVLCL_ 0 0 0 ENST00000465807.1_1_10:102827465-102827807:+|nuORF;nc|ENSG00000107821|Q96I82-2|KAZALD1 ENST00000465807.1_1_10:102827465-102827807:+|nuORF ENST00000465807.1_1_10:102827465-102827807:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2156677246094 3 380.214482 1137.62162 NaN NaN NaN NaN NaN NaN NaN 18.903 1 18.909 18.409 19.409 0.0060463 0 0 0 0.99091 1 9596 9596 0.69767 0.24315 1 8428 13740 5749 5872 9791 9791 0.05830931668060657 EHLFMITE 8 Unmodified _EHLFMITE_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7725830078125 2 510.24696 1018.47937 1.0422 0.00053177 -2.2041 -0.0011246 -1.1619 -0.00059287 510.2452050730914 97.121 0.39513 90.945 90.722 91.117 -6.1757 46 22 3 0 0 0 8.7369 1 64349 64349 19.439 0 1 18430000 + 8429 18862 5750 5873 9792 9792 -0.02913281074143015 EHLIREQKP 9 Unmodified _EHLIREQKP_ 0 0 0 REV__ENST00000332624.7_1_2:202285189-202285387:-|nuORF REV__ENST00000332624.7_1_2:202285189-202285387:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.7925415039062 2 575.32238 1148.63021 1.4628 0.00084159 1.4545 0.00083679 2.9173 0.0016784 575.3236989225372 97.284 0.22983 91.108 90.992 91.221 -6.1757 23 12 3 0 0 0 0.19891 1 64451 64451 11.64 0.81637 1 106310000 + 8430 25614 5751 5874 9793 9793 0.061836216289066215 EHLIRHML 8 Unmodified _EHLIRHML_ 0 0 0 nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3 nc|ENSG00000160584|Q9Y2K2-7|SIK3 nc|ENSG00000160584|Q9Y2K2-7|SIK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.25048828125 2 524.789661 1047.56477 1.6635 0.00087298 3.8723 0.0020322 5.5358 0.0029051 524.7897277931327 47.612 0.47659 42.378 42.104 42.58 -5.2339 84 27 4 0 0 0 8.7369 1 29395 29395 14.582 2.9414 1 32900000 8431 6735 5752 5875 9794 9794 0.042889289022014054 EHLLASTAGRR 11 Unmodified _EHLLASTAGRR_ 0 0 0 REV__ENST00000474988.5_1_6:36410818-36454949:+|nuORF REV__ENST00000474988.5_1_6:36410818-36454949:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.22802734375 3 404.226549 1209.65782 NaN NaN NaN NaN NaN NaN NaN 32.054 1 31.925 31.425 32.425 -0.12915 0 0 0 0.94165 1 16681 16681 0.45452 0 1 + 8432 27568 5753 5876 9795 9795 0.061375248890954026 EHLLGAGF 8 Unmodified _EHLLGAGF_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENST00000460695.1_1_3:153998366-154000997:-|nuORF nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2206115722656 2 422.221603 842.428653 NaN NaN NaN NaN NaN NaN NaN 45.286 1 45.258 44.758 45.758 -0.028011 0 0 0 0.95201 1 24321 24321 10.183 0.83596 1 8433 8474 5754 5877 9796 9796 0.001135576631895674 EHLLQKPNEH 10 Unmodified _EHLLQKPNEH_ 0 0 0 nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.5511169433594 3 415.550921 1243.63093 0.57804 0.0002402 -0.10791 -4.484E-05 0.47013 0.00019536 415.55085335022693 46.545 0.23708 46.209 46.053 46.29 -0.33664 20 11 2 0 0 0 0.38092 1 24888 24888 14.957 3.3258 1 11992000 8434 6123 5755 5878 9797 9797 0.01886416277943681 EHLLQKPNEH 10 Unmodified _EHLLQKPNEH_ 0 0 0 nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A nc|ENSG00000151553|Q5W0V3-2|FHIP2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 415.550921 1243.63093 0.57277 0.00023801 -0.68737 -0.00028564 -0.1146 -4.7623E-05 415.5505173823596 46.352 0.095551 46.352 46.274 46.369 0 0.071711 -0.00067835 NaN 14.957 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 949020 8435 6123 5755 5878 0.01886416277943681 EHLPMLLSL 9 Unmodified _EHLPMLLSL_ 0 0 0 ENST00000471816.1_1_1:160783380-160783455:+|nuORF ENST00000471816.1_1_1:160783380-160783455:+|nuORF ENST00000471816.1_1_1:160783380-160783455:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7943725585938 2 526.794078 1051.5736 1.3973 0.00073611 -1.7783 -0.0009368 -0.38098 -0.0002007 526.7930948420681 95.628 0.25285 89.452 89.316 89.569 -6.1757 25 15 2 0 0 0 0.12424 1 63308 63308 30.637 2.1497 1 14557000 8436 13886 5756 5879 9798 9798 0.04987857748028546 EHLQLDFWR 9 Unmodified _EHLQLDFWR_ 0 0 0 ENSG00000091704|ENST00000011292|CPA1 ENSG00000091704|ENST00000011292|CPA1 ENSG00000091704|ENST00000011292|CPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8146362304688 2 622.314554 1242.61456 -0.58395 -0.0003634 -0.26473 -0.00016474 -0.84868 -0.00052815 622.8159142071144 17.738 0.12336 17.752 17.704 17.827 0.013866 50 31 2 0 0 0 0.61381 1 8836 8836 0.52476 0 1 352550 8437 1597 5757 5880 9799 9799 0.0029533511180943606 EHLQLDFWR 9 Unmodified _EHLQLDFWR_ 0 0 0 ENSG00000091704|ENST00000011292|CPA1 ENSG00000091704|ENST00000011292|CPA1 ENSG00000091704|ENST00000011292|CPA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.314554 1242.61456 -0.58395 -0.0003634 -0.26473 -0.00016474 -0.84868 -0.00052815 622.8159142071144 17.738 0.12336 17.752 17.704 17.827 0.013866 0.076084 -0.0001995 NaN 0.52476 50 31 2 NaN NaN NaN NaN 0 NaN NaN 0 352550 8438 1597 5757 5880 0.0029533511180943606 EHLSGQCRQC 10 Unmodified _EHLSGQCRQC_ 0 0 0 REV__ENST00000596221.1_1_19:50920282-50921201:+|nuORF REV__ENST00000596221.1_1_19:50920282-50921201:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.2003784179688 3 387.502697 1159.48626 1.2561 0.00048674 0.92505 0.00035846 2.1811 0.0008452 387.5031568849912 42.917 0.18341 38.233 38.107 38.29 -4.6846 14 11 2 0 0 0 0.23634 1 25950 25950 3.5871 0 1 4062300 + 8439 17342 5758 5881 9800 9800 -0.08710291465195041 EHLSLQRL 8 Unmodified _EHLSLQRL_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|291|2|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|291|2|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|291|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2852783203125 2 498.285266 994.555979 0.35157 0.00017518 -0.72081 -0.00035917 -0.36924 -0.00018399 498.28489082020945 39.498 0.72832 39.498 39.282 40.01 0 98 35 5 0 0 0 0.67481 1 21321 21321 19.439 1.2926 1 289240000 8440 15961 5759 5882 9801 9801 0.058482785373598745 EHPEMDKYRRH 11 Unmodified _EHPEMDKYRRH_ 0 0 0 REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF REV__ENST00000399196.1_1_6:30781990-30782203:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 749.3552856445312 2 749.354416 1496.69428 0.40189 0.00030116 0.56704 0.00042491 0.96893 0.00072607 749.3547767565002 64.163 0.37133 63.678 63.473 63.844 -0.48512 46 17 3 0 0 0 0.71618 1 35060 35060 2.7352 0.23671 1 3730800 + 8441 26579 5760 5883 9802 9802 -0.03419966276487685 EHPKKLTHI 9 Unmodified _EHPKKLTHI_ 0 0 0 REV__ENSG00000187792|ENST00000341976|ZNF70 REV__ENSG00000187792|ENST00000341976|ZNF70 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2825927734375 2 551.822015 1101.62948 -0.063307 -3.4934E-05 -0.86545 -0.00047758 -0.92876 -0.00051251 551.8213791430053 61.391 0.21307 60.902 60.818 61.031 -0.48932 14 9 2 0 0 0 0.18118 1 33426 33426 18.135 9.5417 1 1307800 + 8442 23663 5761 5884 9803 9803 0.08272826979850834 EHQPLNLF 8 Unmodified _EHQPLNLF_ 0 0 0 REV__nc|ENSG00000119042|Q9UPW6-2|SATB2 REV__nc|ENSG00000119042|Q9UPW6-2|SATB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7695007324219 2 499.258717 996.50288 -0.056323 -2.812E-05 1.4408 0.00071931 1.3844 0.00069119 499.2594768936004 51.161 0.33854 50.748 50.557 50.896 -0.41351 29 16 3 0 0 0 8.7369 1 27641 27641 13.508 4.9146 1 5373200 + 8443 19179 5762 5885 9804 9804 0.0044890075471357704 EHQQDSEDLF 10 Unmodified _EHQQDSEDLF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2;ENST00000469086.5_1_22:39136824-39138467:-|nuORF;ENST00000477262.5_1_22:39135390-39138407:-|nuORF nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5111083984375 3 416.51068 1246.51021 -0.030167 -1.2565E-05 0.93497 0.00038943 0.90481 0.00037686 416.51106711907346 39.435 0.15023 39.138 39.07 39.22 -0.29716 8 6 2 0 0 0 0.7191 1 20823 20823 0.77653 0 1 1081400 8444 1777 5763 5886 9805 9805 -0.10318456226195849 EHQVMFSMLE 10 Unmodified _EHQVMFSMLE_ 0 0 0 nc|ENSG00000223519|B7ZC32|KIF28P nc|ENSG00000223519|B7ZC32|KIF28P nc|ENSG00000223519|B7ZC32|KIF28P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.7815551757812 2 625.780841 1249.54713 NaN NaN NaN NaN NaN NaN NaN 14.51 1 14.517 14.017 15.017 0.0073986 0 0 0 0.99248 1 7196 7196 1.4819 0.95714 1 8445 16551 5764 5887 9806 9806 -0.06766199205594603 EHRCTPCR 8 Unmodified _EHRCTPCR_ 0 0 0 REV__nc|ENSG00000158022|Q969Q1-2|TRIM63 REV__nc|ENSG00000158022|Q969Q1-2|TRIM63 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.747802734375 2 501.223828 1000.4331 0.061312 3.0731E-05 1.6587 0.00083136 1.72 0.00086209 501.7273547485711 35.43 0.11637 35.43 35.38 35.496 0 6 5 2 0 0 0 8.7369 1 18745 18745 20.454 9.6297 1 2491100 + 8446 21412 5765 5888 9807 9807 -0.06709624457209884 EHRFNGSAWKH 11 Unmodified _EHRFNGSAWKH_ 0 0 0 REV__ENSG00000162595|ENST00000646789|DIRAS3 REV__ENSG00000162595|ENST00000646789|DIRAS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.8330688476562 2 684.831434 1367.64832 NaN NaN NaN NaN NaN NaN NaN 96.546 1 96.546 96.046 97.046 0 0 0 0 0.94201 1 53355 53355 1.0715 0.67075 1 + 8447 21660 5766 5889 9808 9808 -0.020802433964036027 EHRKAEYTEQ 10 Unmodified _EHRKAEYTEQ_ 0 0 0 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8086547851562 2 645.807291 1289.60003 -0.64851 -0.00041881 0.90625 0.00058526 0.25775 0.00016646 645.8078921638714 19.36 0.13743 19.384 19.32 19.458 0.023106 22 12 3 0 0 0 0.67033 1 9754 9754 6.2058 0.47393 1 871610 + 8448 23579 5767 5890 9809 9809 -0.03318781826965278 EHRKAEYTEQ 10 Unmodified _EHRKAEYTEQ_ 0 0 0 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8736877441406 3 430.873953 1289.60003 -0.5216 -0.00022474 -0.17006 -7.3273E-05 -0.69166 -0.00029802 430.87372884428856 19.368 0.20667 19.392 19.305 19.512 0.023106 48 19 4 0 0 0 0.62068 1 9767 9767 5.7834 3.1522 1 3728800 + 8449 23579 5767 5890 9810 9810 -0.03318781826965278 EHRKAEYTEQ 10 Unmodified _EHRKAEYTEQ_ 0 0 0 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 645.807291 1289.60003 -0.64851 -0.00041881 0.90625 0.00058526 0.25775 0.00016646 645.8078921638714 19.36 0.13743 19.384 19.32 19.458 0.023106 -0.037593 0.00013137 NaN 6.2058 22 12 3 NaN NaN NaN NaN 0 NaN NaN 0 871610 + 8450 23579 5767 5890 -0.03318781826965278 EHRKAEYTEQ 10 Unmodified _EHRKAEYTEQ_ 0 0 0 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 430.873953 1289.60003 -0.5216 -0.00022474 -0.17006 -7.3273E-05 -0.69166 -0.00029802 430.87372884428856 19.368 0.20667 19.392 19.305 19.512 0.023106 0 0 NaN 5.7834 48 19 4 NaN NaN NaN NaN 0 NaN NaN 0 3728800 + 8451 23579 5767 5890 -0.03318781826965278 EHRMYSHPL 9 Unmodified _EHRMYSHPL_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5221862792969 3 390.522197 1168.54476 -0.46189 -0.00018038 0.24334 9.5029E-05 -0.21855 -8.535E-05 390.85647497555425 25.051 0.13725 25.051 25.01 25.147 0 9 7 2 0 0 0 0.21874 1 12861 12861 1.1933 0 1 817120 8452 640 5768 5891 9811 9811 -0.03276866828423408 EHRVHGAMEL 10 Unmodified _EHRVHGAMEL_ 0 0 0 ENSG00000107738|ENST00000394957|VSIR;ENST00000481568.2_1_10:73520406-73521697:-|nuORF ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7904052734375 2 589.790389 1177.56623 0.31412 0.00018526 0.21717 0.00012809 0.53129 0.00031335 589.790264525055 100.34 0.14095 100.18 100.08 100.22 -0.1575 8 4 3 0 0 0 0.57893 1 54771 54771 12.241 0.60036 1 1952800 8453 2513 5769 5892 9812 9812 -0.015454817996896963 EHRVHGAMEL 10 Unmodified _EHRVHGAMEL_ 0 0 0 ENSG00000107738|ENST00000394957|VSIR;ENST00000481568.2_1_10:73520406-73521697:-|nuORF ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 589.790389 1177.56623 0.09086 5.3588E-05 0.09208 5.4308E-05 0.18294 0.0001079 589.7908518803551 100.25 0.1069 100.25 100.17 100.28 0 0.035693 -6.4545E-05 NaN 12.241 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 579130 8454 2513 5769 5892 -0.015454817996896963 EHSGNIYPPY 10 Unmodified _EHSGNIYPPY_ 0 0 0 ENST00000464425.1_1_6:33236878-33239476:-|nuORF ENST00000464425.1_1_6:33236878-33239476:-|nuORF ENST00000464425.1_1_6:33236878-33239476:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.859619140625 3 392.848856 1175.52474 -0.45342 -0.00017812 -0.64546 -0.00025357 -1.0989 -0.00043169 392.84860909228445 29.073 0.46791 29.073 28.943 29.411 0 58 22 5 0 0 0 0.63399 1 14997 14997 5.4027 2.0831 1 35100000 8455 13717 5770 5893 9813 9813 -0.056003392873890334 EHSGNIYPPY 10 Unmodified _EHSGNIYPPY_ 0 0 0 ENST00000464425.1_1_6:33236878-33239476:-|nuORF ENST00000464425.1_1_6:33236878-33239476:-|nuORF ENST00000464425.1_1_6:33236878-33239476:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.1831665039062 3 392.848856 1175.52474 -0.28791 -0.00011311 -0.18831 -7.3976E-05 -0.47622 -0.00018708 392.84875123349815 31.022 0.85669 31.022 30.503 31.359 0 56 41 3 0 0 0 0.44373 1 16129 16129 12.175 6.3913 1 4604600 8456 13717 5770 5893 9814 9814 -0.056003392873890334 EHSKLLFTF 9 Unmodified _EHSKLLFTF_ 0 0 0 REV__ENSG00000109805|ENST00000251496|NCAPG REV__ENSG00000109805|ENST00000251496|NCAPG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.758056640625 2 561.303124 1120.5917 0.35282 0.00019804 -0.97807 -0.000549 -0.62526 -0.00035096 561.3020128308658 50.367 0.25953 50.367 50.236 50.495 0 17 11 2 0 0 0 0.19994 1 27708 27708 18.135 9.5417 1 1714000 + 8457 18672 5771 5894 9815 9815 0.036223159943801875 EHSRWRPYTA 10 Unmodified _EHSRWRPYTA_ 0 0 0 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824462890625 3 434.882782 1301.62652 NaN NaN NaN NaN NaN NaN NaN 32.363 1 32.363 31.863 32.863 0 0 0 0 0.94046 1 16902 16902 6.1918 0 1 8458 4675 5772 5895 9816 9816 -0.012230481449478248 EHTAKENMLR 10 Unmodified _EHTAKENMLR_ 0 0 0 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.5428771972656 3 410.208278 1227.60301 -0.45629 -0.00018718 0.9188 0.0003769 0.4625 0.00018972 410.20865712477257 19.636 0.14098 19.665 19.602 19.743 0.028357 26 11 3 0 0 0 0.71042 1 9911 9911 1.7423 0.14999 1 958600 + 8459 19252 5773 5896 9817 9817 -0.001692299737896974 EHTAKENMLR 10 Unmodified _EHTAKENMLR_ 0 0 0 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 410.208278 1227.60301 -0.45629 -0.00018718 0.9188 0.0003769 0.4625 0.00018972 410.20865712477257 19.636 0.14098 19.665 19.602 19.743 0.028357 -0.054523 -0.00026067 NaN 1.7423 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 958600 + 8460 19252 5773 5896 -0.001692299737896974 EHTAKENMLR 10 Unmodified _EHTAKENMLR_ 0 0 0 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 410.208278 1227.60301 -0.10806 -4.4326E-05 1.73 0.00070968 1.622 0.00066535 410.20892912796637 19.747 0.086437 19.755 19.692 19.779 0.0078506 0.035576 0.00073766 NaN 1.7423 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 252570 + 8461 19252 5773 5896 -0.001692299737896974 EHTAKENMLR 10 Unmodified _EHTAKENMLR_ 0 0 0 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 REV__nc|ENSG00000120658|Q8TC92-2|ENOX1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 410.208278 1227.60301 0.65104 0.00026706 -1.583 -0.00064936 -0.93197 -0.0003823 410.5427320614977 22.517 0.10217 19.738 19.69 19.792 -2.7784 0.018947 -0.0033395 NaN 1.7423 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1813100 + 8462 19252 5773 5896 -0.001692299737896974 EHTCDHWIYY 10 Unmodified _EHTCDHWIYY_ 0 0 0 REV__ENSG00000138079|ENST00000260649|SLC3A1 REV__ENSG00000138079|ENST00000260649|SLC3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.1895141601562 3 456.188884 1365.54482 0.23807 0.0001086 0.43075 0.0001965 0.66881 0.00030511 456.18905839777364 14.745 0.15938 12.242 12.163 12.322 -2.5029 43 27 2 0 0 0 0.71981 1 7502 7502 0.69767 0.19171 1 2840100 + 8463 20299 5774 5897 9818 9818 -0.12332911619046172 EHTYFDWGF 9 Unmodified _EHTYFDWGF_ 0 0 0 ENST00000454495.6_1_3:183353505-183368101:+|nuORF;ENST00000468001.1_1_3:183354395-183368101:+|nuORF;ENST00000468101.5_1_3:183353437-183368104:+|nuORF ENST00000454495.6_1_3:183353505-183368101:+|nuORF ENST00000454495.6_1_3:183353505-183368101:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2515869140625 2 601.251089 1200.48762 NaN NaN NaN NaN NaN NaN NaN 78.404 1 77.918 77.418 78.418 -0.48596 0 0 0 0.84369 1 42942 42942 2.3027 0 1 8464 13572 5775 5898 9819 9819 -0.10460010833139677 EHVHTAATIR 10 Unmodified _EHVHTAATIR_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8724060058594 3 378.871995 1133.59415 1.2185 0.00046166 -0.0085803 -3.2508E-06 1.2099 0.00045841 378.87200792831754 46.917 0.384 46.883 46.572 46.956 -0.033417 28 18 2 0 0 0 0.6785 1 25239 25239 2.8433 0 1 3219400 + 8465 21482 5776 5899 9820 9820 0.032701644520329864 EHVKHFVI 8 Unmodified _EHVKHFVI_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1008.562805175781 1 1008.56253 1007.55525 0.53129 0.00053584 1.5647 0.001578 2.0959 0.0021139 1008.5646865189951 29.585 0.13537 29.504 29.44 29.575 -0.080431 7 5 2 0 0 0 0.80143 1 15317 15317 5.7604 0 1 7719900 8466 1392 5777 5900 9821 9821 0.051774838883375196 EHWCSISYN 9 Unmodified _EHWCSISYN_ 0 0 0 REV__ENST00000486313.1_1_7:91731925-91739478:+|nuORF REV__ENST00000486313.1_1_7:91731925-91739478:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2603759765625 2 569.734748 1137.45494 0.48091 0.00027399 0.84771 0.00048297 1.3286 0.00075696 569.7354571802217 68.301 0.26826 68.301 68.146 68.415 0 26 12 3 0 0 0 0.20727 1 38045 38045 7.9102 3.1541 1 736500 + 8467 27800 5778 5901 9822 9822 -0.10828541227647293 EHYDILCAI 9 Unmodified _EHYDILCAI_ 0 0 0 ENSG00000172780|ENST00000315150|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF ENSG00000172780|ENST00000315150|RAB43 ENSG00000172780|ENST00000315150|RAB43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.75830078125 2 538.757692 1075.50083 0.25032 0.00013486 1.1887 0.00064044 1.4391 0.0007753 538.7581695613277 80.22 0.40034 80.22 80.03 80.43 0 48 21 3 0 0 0 0.48152 2 44581 44491;44581 8.5933 2.8329 1 2150900 8468 8254 5779 5902 9823;9824 9824 -0.033898960454280314 EHYPVEEFTL 10 Unmodified _EHYPVEEFTL_ 0 0 0 REV__ENSG00000125966|ENST00000246186|MMP24 REV__ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.29931640625 2 632.298236 1262.58192 -0.29166 -0.00018442 2.0831 0.0013171 1.7914 0.0011327 632.2993101305143 38.362 0.26543 38.075 37.93 38.196 -0.28687 26 11 3 0 0 0 0.33553 1 20194 20194 25.399 7.253 1 2349600 + 8469 19532 5780 5903 9825 9825 -0.038869168016844924 EHYYIEPSF 9 Unmodified _EHYYIEPSF_ 0 0 0 nc|ENSG00000171208|Q8NC67-3|NETO2;ENSG00000171208|ENST00000562435|NETO2 nc|ENSG00000171208|Q8NC67-3|NETO2 nc|ENSG00000171208|Q8NC67-3|NETO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5149841308594 3 395.513473 1183.51859 -0.81124 -0.00032086 3.4911 0.0013808 2.6798 0.0010599 395.51438822433374 28.179 0.20174 28.179 28.09 28.292 0 23 9 3 0 0 0 0.32235 1 14540 14540 16.149 1.9309 1 2657400 8470 8078 5781 5904 9826 9826 -0.06582857518924357 EIACIAWFTG 10 Unmodified _EIACIAWFTG_ 0 0 0 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2667236328125 2 555.76806 1109.52157 1.0237 0.00056891 -0.69487 -0.00038619 0.32878 0.00018273 556.2713714854955 49.89 0.49533 49.498 49.296 49.791 -0.3923 41 24 2 0 0 0 0.23057 1 26778 26778 13.042 5.1323 1 4683200 8471 8018 5782 5905 9827 9827 -0.028813056657554625 EIAHPAID 8 Unmodified _EIAHPAID_ 0 0 0 REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF REV__ENST00000459739.5_1_10:79553706-79569486:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2229614257812 2 433.224342 864.434132 NaN NaN NaN NaN NaN NaN NaN 86.518 1 80.342 79.842 80.842 -6.1757 0 0 0 0.93066 1 57038 57038 14.582 5.2343 1 + 8472 21055 5783 5906 9828 9828 -0.0035076354499778972 EIALRGPYLF 10 Unmodified _EIALRGPYLF_ 0 0 0 ENST00000425953.5_1_2:95880296-95880386:+|nuORF ENST00000425953.5_1_2:95880296-95880386:+|nuORF ENST00000425953.5_1_2:95880296-95880386:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5573425292969 3 393.557125 1177.64954 -0.22432 -8.8281E-05 -0.34869 -0.00013723 -0.57301 -0.00022551 393.55678496261106 35.714 0.2207 35.739 35.624 35.845 0.024967 13 10 2 0 0 0 0.66569 1 18906 18906 3.5871 0.95582 1 3248700 8473 13172 5784 5907 9829 9829 0.06782577919784671 EIAMCEPEFG 10 Unmodified _EIAMCEPEFG_ 0 0 0 ENSG00000103375|ENST00000219660|AQP8 ENSG00000103375|ENST00000219660|AQP8 ENSG00000103375|ENST00000219660|AQP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2340087890625 2 563.233193 1124.45183 0.32004 0.00018026 0.91036 0.00051275 1.2304 0.000693 563.2335355618221 89.893 0.29169 89.893 89.746 90.038 0 32 19 2 0 0 0 0.71123 1 49710 49710 1.6526 0 1 688090 8474 2135 5785 5908 9830 9830 -0.1054155239667125 EIAQRCHELDM 11 Unmodified _EIAQRCHELDM_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.3070068359375 2 672.805379 1343.59621 1.3104 0.00088168 -1.1813 -0.00079476 0.12919 8.692E-05 672.8045000537684 82.657 0.54671 82.719 82.394 82.941 0.062004 64 20 4 0 0 0 0.53952 1 45735 45735 14.405 2.1647 1 16701000 8475 7726 5786 5909 9831 9831 -0.06184910916681474 EIATIGLSWL 10 Unmodified _EIATIGLSWL_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-6|TNIK REV__nc|ENSG00000154310|Q9UKE5-6|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.810546875 2 551.810782 1101.60701 0.40908 0.00022573 -0.95501 -0.00052699 -0.54593 -0.00030125 551.8103382516387 79.982 0.31686 79.982 79.841 80.158 0 27 17 2 0 0 0 0.67033 1 44428 44428 6.2058 0 1 569580 + 8476 21224 5787 5910 9832 9832 0.06027182791581254 EICCEQDPF 9 Unmodified _EICCEQDPF_ 0 0 0 REV__ENST00000560042.1_1_15:69706723-69714099:+|nuORF REV__ENST00000560042.1_1_15:69706723-69714099:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2100219726562 2 542.209718 1082.40488 1.2417 0.00067325 1.0986 0.00059569 2.3403 0.0012689 542.2101702524653 41.897 0.30068 37.289 37.127 37.428 -4.6079 27 18 2 0 0 0 0.5029 1 25235 25235 7.2892 2.0586 1 7053000 + 8477 20267 5788 5911 9833 9833 -0.13302411947802284 EICELSLVI 9 Unmodified _EICELSLVI_ 0 0 0 REV__ENST00000487216.1_1_19:21416232-21416373:+|nuORF REV__ENST00000487216.1_1_19:21416232-21416373:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 509.779296875 2 509.778093 1017.54163 NaN NaN NaN NaN NaN NaN NaN 81.913 1 75.737 75.237 76.237 -6.1757 0 0 0 0.20498 1 53787 53787 30.225 0 1 + 8478 27823 5789 5912 9834 9834 0.03356445274221187 EIDHQHSHL 9 Unmodified _EIDHQHSHL_ 0 0 0 REV__ENSG00000172932|ENST00000511455|ANKRD13D REV__ENSG00000172932|ENST00000511455|ANKRD13D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2659912109375 2 558.265062 1114.51557 NaN NaN NaN NaN NaN NaN NaN 84.379 1 84.379 83.879 84.879 0 0 0 0 0.84737 1 46779 46779 1.8442 0 1 + 8479 22688 5790 5913 9835 9835 -0.037106878530494214 EIDLHAHYLI 10 Unmodified _EIDLHAHYLI_ 0 0 0 REV__ENST00000372386.6_1_9:133355254-133376405:+|nuORF REV__ENST00000372386.6_1_9:133355254-133376405:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5533752441406 3 408.552151 1222.63462 NaN NaN NaN NaN NaN NaN NaN 18.516 1 18.522 18.022 19.022 0.0060463 0 0 0 0.99897 1 9387 9387 0.77653 0 1 + 8480 19737 5791 5914 9836 9836 0.03221086051803468 EIDSYKSDCVI 11 Unmodified _EIDSYKSDCVI_ 0 0 0 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.5328369140625 3 424.532316 1270.57512 NaN NaN NaN NaN NaN NaN NaN 28.884 1 28.821 28.321 29.321 -0.062159 0 0 0 0.94165 1 14923 14923 0.45452 0 1 + 8481 17881 5792 5915 9837 9837 -0.04934597744545499 EIDYLPSVI 9 Unmodified _EIDYLPSVI_ 0 0 0 REV__ENSG00000170802|ENST00000340553|FOXN2 REV__ENSG00000170802|ENST00000340553|FOXN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2886962890625 2 524.78169 1047.54883 0.47369 0.00024858 -1.6821 -0.00088272 -1.2084 -0.00063414 524.7806042437553 76.019 0.33439 76.019 75.791 76.126 0 26 15 2 0 0 0 0.16785 1 42271 42271 23.148 1.4018 1 3237400 + 8482 22511 5793 5916 9838 9838 0.026955011462860057 EIDYLPSVI 9 Unmodified _EIDYLPSVI_ 0 0 0 REV__ENSG00000170802|ENST00000340553|FOXN2 REV__ENSG00000170802|ENST00000340553|FOXN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2896728515625 2 524.78169 1047.54883 -0.059588 -3.1271E-05 -0.10072 -5.2857E-05 -0.16031 -8.4128E-05 524.7812956557482 76.503 0.38077 76.024 75.835 76.216 -0.47945 44 24 3 0 0 0 0.13712 1 41823 41823 23.148 6.2061 1 6413800 + 8483 22511 5793 5916 9839 9839 0.026955011462860057 EIEEDGCPRPQ 11 Unmodified _EIEEDGCPRPQ_ 0 0 0 REV__ENST00000482513.5_1_2:61293116-61296033:+|nuORF REV__ENST00000482513.5_1_2:61293116-61296033:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.7777099609375 2 636.779884 1271.54522 NaN NaN NaN NaN NaN NaN NaN 18.053 1 18.059 17.559 18.559 0.0060463 0 0 0 0.94184 1 9133 9133 1.1933 0.66858 1 + 8484 27722 5794 5917 9840 9840 -0.07969536689893175 EIEGLQNSVWQ 11 Unmodified _EIEGLQNSVWQ_ 0 0 0 nc|ENSG00000177414|Q5VVX9-2|UBE2U;ENSG00000177414|ENST00000371077|UBE2U;nc|ENSG00000177414|Q5VVX9|UBE2U nc|ENSG00000177414|Q5VVX9-2|UBE2U nc|ENSG00000177414|Q5VVX9-2|UBE2U MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827514648438 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 28.781 1 28.781 28.281 29.281 0 0 0 0 0.94196 1 14882 14882 1.1098 0.096179 1 8485 8681 5795 5918 9841 9841 -0.013567270243584062 EIEKWLQL 8 Unmodified _EIEKWLQL_ 0 0 0 REV__nc|ENSG00000164172|O96033|MOCS2 REV__nc|ENSG00000164172|O96033|MOCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7977905273438 2 529.797675 1057.5808 0.4084 0.00021637 -0.097782 -5.1805E-05 0.31061 0.00016456 529.7976312183243 86.835 0.27751 86.332 86.165 86.443 -0.50318 16 10 2 0 0 0 0.80311 1 47501 47501 4.756 0.42677 1 471140 + 8486 29747 5796 5919 9842 9842 0.054309136201027286 EIEKYLKCI 9 Unmodified _EIEKYLKCI_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8110961914062 2 569.812467 1137.61038 NaN NaN NaN NaN NaN NaN NaN 66.988 1 66.505 66.005 67.005 -0.48323 0 0 0 0.83049 1 36591 36591 3.9444 0.3479 1 + 8487 29720 5797 5920 9843 9843 0.04708109573925867 EIEVKPEV 8 Unmodified _EIEVKPEV_ 0 0 0 REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.5142822265625 1 942.514239 941.506963 -0.028762 -2.7108E-05 -0.15832 -0.00014922 -0.18708 -0.00017633 942.5139965158006 69.233 0.37887 69.233 68.998 69.377 0 42 16 3 0 0 0 0.28079 1 38493 38493 57.471 2.6978 1 7721500 + 8488 29087 5798 5921 9844 9844 0.03386945457771162 EIEVKPEV 8 Unmodified _EIEVKPEV_ 0 0 0 REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.5137939453125 1 942.514239 941.506963 -0.30057 -0.00028329 -2.5353 -0.0023895 -2.8359 -0.0026728 942.5118958868061 77.052 0.39469 70.876 70.739 71.134 -6.1757 38 22 2 0 0 0 0.36356 1 50377 50377 48.346 8.3885 1 25865000 + 8489 29087 5798 5921 9845 9845 0.03386945457771162 EIFDSYIMKEL 11 Unmodified _EIFDSYIMKEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.844970703125 2 694.344329 1386.6741 -0.014651 -1.0173E-05 -1.5575 -0.0010814 -1.5721 -0.0010916 694.3432054809075 95.574 0.40324 95.574 95.397 95.8 0 76 26 4 0 0 0 0.69708 1 52758 52758 4.5289 1.5336 1 3114700 8490 8280 5799 5922 9846 9846 -0.003765747796251162 EIFDSYIMKEL 11 Unmodified _EIFDSYIMKEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.3422241210938 2 694.344329 1386.6741 NaN NaN NaN NaN NaN NaN NaN 87.602 1 87.602 87.102 88.102 0 0 0 0 0.94032 1 48505 48505 2.2828 0.19677 1 8491 8280 5799 5922 9847 9847 -0.003765747796251162 EIFKIFDKQE 10 Unmodified _EIFKIFDKQE_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8458251953125 2 648.845353 1295.67615 NaN NaN NaN NaN NaN NaN NaN 88.423 1 88.423 87.923 88.923 0 0 0 0 0.99388 1 48944 48944 1.3295 0.80477 1 + 8492 17283 5800 5923 9848 9848 0.04014222020487068 EIFLHPGE 8 Unmodified _EIFLHPGE_ 0 0 0 ENSG00000174992|ENST00000400752|ZG16 ENSG00000174992|ENST00000400752|ZG16 ENSG00000174992|ENST00000400752|ZG16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7417297363281 2 471.239993 940.465432 0.039145 1.8447E-05 1.1411 0.00053771 1.1802 0.00055616 471.2403348016757 99.001 0.1373 92.826 92.74 92.878 -6.1757 11 8 2 0 0 0 0.40035 1 65813 65813 44.407 3.9584 1 19912000 8493 8477 5801 5924 9849 9849 -0.007181905109064246 EIFLKLEYD 9 Unmodified _EIFLKLEYD_ 0 0 0 REV__ENSG00000119669|ENST00000238647|IRF2BPL REV__ENSG00000119669|ENST00000238647|IRF2BPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8760070800781 3 390.54114 1168.60159 -0.16415 -6.4109E-05 0.88016 0.00034374 0.716 0.00027963 390.5415107046503 37.648 0.28707 37.666 37.552 37.839 0.01704 33 13 3 0 0 0 0.45045 1 19968 19968 6.6304 0.84694 1 11831000 + 8494 19199 5802 5925 9850 9850 0.024034592090856677 EIFQGFSDLKL 11 Unmodified _EIFQGFSDLKL_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8446655273438 2 648.845353 1295.67615 -0.028961 -1.8792E-05 0.081985 5.3196E-05 0.053024 3.4404E-05 649.3473619569234 88.705 0.16187 88.705 88.576 88.738 0 10 8 2 0 0 0 0.73389 1 49105 49105 1.0715 0.5467 1 254610 + 8495 20798 5803 5926 9851 9851 0.04014222020464331 EIFQHLMAY 9 Oxidation (M) _EIFQHLM(Oxidation (M))AY_ EIFQHLM(1)AY EIFQHLM(82)AY 0 0 1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2797241210938 2 584.278792 1166.54303 0.37224 0.00021749 0.50951 0.0002977 0.88175 0.00051519 584.2788086395295 52.61 0.25645 52.176 52.023 52.279 -0.43367 19 12 2 0 0 0 0.0095811 1 28420 28420 81.613 53.126 1 5289500 8496 6530 5804 5927 9852 9852 1142 -0.03357920637017742 EIFRASAVI 9 Unmodified _EIFRASAVI_ 0 0 0 nc|ENSG00000123243|Q86UX2-2|ITIH5;nc|ENSG00000123243|Q86UX2|ITIH5;ENSG00000123243|ENST00000397146|ITIH5 nc|ENSG00000123243|Q86UX2-2|ITIH5 nc|ENSG00000123243|Q86UX2-2|ITIH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2906494140625 2 503.290017 1004.56548 -0.099497 -5.0076E-05 -2.6245 -0.0013209 -2.724 -0.0013709 503.2895981761781 63.349 0.4776 62.863 62.562 63.04 -0.48617 32 21 2 0 0 0 0.23158 1 34557 34557 20.454 2.3073 1 1961300 8497 3694 5805 5928 9853 9853 0.06338046822895649 EIGAWVINVF 10 Unmodified _EIGAWVINVF_ 0 0 0 REV__ENST00000466630.5_1_7:55980329-55991094:+|nuORF REV__ENST00000466630.5_1_7:55980329-55991094:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.8115234375 2 574.310949 1146.60735 0.72829 0.00041826 -0.69026 -0.00039643 0.038021 2.1836E-05 574.8114359830614 56.637 0.53871 50.66 50.304 50.843 -5.9769 94 30 4 0 0 0 0.22941 1 36211 36211 13.906 1.6654 1 114450000 + 8498 27412 5806 5929 9854 9854 0.03990602511407815 EIGKELAKQF 10 Unmodified _EIGKELAKQF_ 0 0 0 REV__nc|ENSG00000115484|P50991-2|CCT4 REV__nc|ENSG00000115484|P50991-2|CCT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2965087890625 2 581.826963 1161.63937 0.45917 0.00026716 -0.95763 -0.00055718 -0.49847 -0.00029002 581.8268026132546 60.874 0.32965 60.874 60.67 60.999 0 23 13 2 0 0 0 0.23162 1 33916 33916 12.241 2.1667 1 1750600 + 8499 18984 5807 5930 9855 9855 0.06501970194563 EIGWDSEAL 9 Unmodified _EIGWDSEAL_ 0 0 0 nc|ENSG00000164556|Q6ZVS7|CFAP144P1 nc|ENSG00000164556|Q6ZVS7|CFAP144P1 nc|ENSG00000164556|Q6ZVS7|CFAP144P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2397766113281 2 510.237647 1018.46074 0.32796 0.00016734 -1.5289 -0.00078011 -1.201 -0.00061277 510.2389180300993 46.832 0.2702 46.832 46.631 46.901 0 25 12 3 0 0 0 0.2001 1 25592 25592 23.148 1.4018 1 3057100 8500 16345 5808 5931 9856 9856 -0.047751194443321765 EIGWENDEH 9 Unmodified _EIGWENDEH_ 0 0 0 REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5 REV__nc|ENSG00000081307|Q9GZZ9-2|UBA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8178100585938 2 564.73326 1127.45197 0.39715 0.00022429 -0.81748 -0.00046166 -0.42033 -0.00023737 564.7327559571556 46.735 0.27428 46.735 46.565 46.839 0 20 12 2 0 0 0 0.209 1 25528 25528 7.2892 1.5288 1 3628900 + 8501 17690 5809 5932 9857 9857 -0.1066609308079478 EIHPPKLVL 9 Unmodified _EIHPPKLVL_ 0 0 0 ENSG00000163848|ENST00000360647|ZNF148;ENST00000497929.1_1_3:124951187-125011317:-|nuORF ENSG00000163848|ENST00000360647|ZNF148 ENSG00000163848|ENST00000360647|ZNF148 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.324951171875 2 523.32386 1044.63317 0.89531 0.00046854 -0.24108 -0.00012616 0.65423 0.00034237 523.3237833106263 66.5 0.30332 66.509 66.361 66.665 0.0095596 37 14 3 0 0 0 0.03568 1 36448 36448 52.268 7.8613 1 21758000 8502 7083 5810 5933 9858 9858 0.1126349675369056 EIIAVRIEI 9 Unmodified _EIIAVRIEI_ 0 0 0 nc|ENSG00000156026|Q8NE86-2|MCU nc|ENSG00000156026|Q8NE86-2|MCU nc|ENSG00000156026|Q8NE86-2|MCU MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2926635742188 2 528.326599 1054.63865 0.48761 0.00025762 -0.25745 -0.00013602 0.23016 0.0001216 528.3265278556048 72.037 0.28955 71.561 71.441 71.73 -0.47609 17 11 2 0 0 0 0.20728 1 39490 39490 8.7454 2.0222 1 1224800 8503 16290 5811 5934 9859 9859 0.11351175545519254 EIISLSFNTS 10 Unmodified _EIISLSFNTS_ 0 0 0 nc|ENSG00000123977|Q8N136-2|DAW1;ENSG00000123977|ENST00000309931|DAW1 nc|ENSG00000123977|Q8N136-2|DAW1 nc|ENSG00000123977|Q8N136-2|DAW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.788818359375 2 555.787504 1109.56045 0.61852 0.00034377 1.2832 0.00071321 1.9018 0.001057 555.7882389495794 93.238 0.95133 92.78 92.56 93.511 -0.4574 124 43 6 0 0 0 0.63399 1 51149 51149 9.3831 2.66 1 14699000 8504 3738 5812 5935 9860 9860 0.010056981696152434 EIKAAGHVLL 10 Unmodified _EIKAAGHVLL_ 0 0 0 ENST00000589947.7_1_19:19459550-19465349:+|nuORF ENST00000589947.7_1_19:19459550-19465349:+|nuORF ENST00000589947.7_1_19:19459550-19465349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.818359375 2 525.818941 1049.62333 0.73608 0.00038705 -0.78734 -0.000414 -0.051255 -2.6951E-05 525.8185490595129 53.488 0.24439 53.488 53.401 53.645 0 18 11 2 0 0 0 0.085354 1 29662 29662 49.933 1.5872 1 3702100 8505 15680 5813 5936 9861 9861 0.10050308748327552 EIKDYSPYF 9 Unmodified _EIKDYSPYF_ 0 0 0 ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;CON__Q9Z2K1;CON__Q3ZAW8 ENSG00000186847|ENST00000167586|KRT14 ENSG00000186847|ENST00000167586|KRT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2710571289062 2 581.276772 1160.53899 -0.0057847 -3.3625E-06 -2.062 -0.0011986 -2.0678 -0.001202 581.2723812877302 38.408 0.39228 38.121 37.847 38.239 -0.28687 46 17 4 0 0 0 0.076472 1 20211 20211 34.402 9.0024 1 3346100 + 8506 157 5814 5937 9862 9862 -0.034856868590850354 EIKKETAAEI 10 Unmodified _EIKKETAAEI_ 0 0 0 nc|ENSG00000138496|Q8IXQ6|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2151489257812 3 377.880044 1130.6183 0.23316 8.8105E-05 1.433 0.00054152 1.6662 0.00062963 377.8805960955327 31.364 0.52215 31.261 31.053 31.575 -0.10269 40 20 3 0 0 0 0.59286 1 16264 16264 11.518 11.518 1 2817900 8507 5062 5815 5938 9863 9863 0.05821960095045142 EIKKETAAEI 10 Unmodified _EIKKETAAEI_ 0 0 0 nc|ENSG00000138496|Q8IXQ6|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8805541992188 3 377.880044 1130.6183 1.2776 0.00048278 1.396 0.00052752 2.6736 0.0010103 377.880569816336 35.488 0.74694 31.295 30.977 31.724 -4.1928 82 46 2 0 0 0 0.48629 1 20495 20495 17.049 2.8304 1 18083000 8508 5062 5815 5938 9864 9864 0.05821960095045142 EIKMNQEVF 9 Unmodified _EIKMNQEVF_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8572082519531 3 379.858475 1136.5536 -0.33435 -0.000127 -2.9824 -0.0011329 -3.3167 -0.0012599 379.8573830325337 40.693 0.1375 40.693 40.62 40.758 0 10 7 2 0 0 0 0.5029 1 21905 21905 4.5289 1.4566 1 1447600 + 8509 22709 5816 5939 9865 9865 -0.009219379825935903 EIKMNQEVF 9 Unmodified _EIKMNQEVF_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 379.858475 1136.5536 -0.33435 -0.000127 -2.9824 -0.0011329 -3.3167 -0.0012599 379.8573830325337 40.693 0.1375 40.693 40.62 40.758 0 -0.036465 -0.00048441 NaN 4.5289 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1447600 + 8510 22709 5816 5939 -0.009219379825935903 EIKMNQEVF 9 Unmodified _EIKMNQEVF_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.858475 1136.5536 0.24169 9.1806E-05 -2.3354 -0.00088714 -2.0938 -0.00079533 380.1920145434915 41.069 0.18567 40.766 40.678 40.863 -0.30304 0.036465 0.0002528 NaN 4.5289 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1689600 + 8511 22709 5816 5939 -0.009219379825935903 EIKPLPEWE 9 Unmodified _EIKPLPEWE_ 0 0 0 ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1 ENSG00000109458|ENST00000262994|GAB1 ENSG00000109458|ENST00000262994|GAB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7244873046875 2 570.800414 1139.58628 0.3857 0.00022016 -0.020736 -1.1836E-05 0.36496 0.00020832 571.302039219574 66.679 0.30865 66.196 66.046 66.355 -0.48323 31 14 3 0 0 0 0.209 1 36498 36498 7.2892 1.0834 1 1475700 8512 2650 5817 5940 9866 9866 0.022065924119033298 EIKPSREQL 9 Unmodified _EIKPSREQL_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.2081298828125 3 367.208384 1098.60332 -0.50935 -0.00018704 0.73853 0.0002712 0.22918 8.4158E-05 367.2084906585363 26.258 0.30295 26.258 26.125 26.428 0 34 16 3 0 0 0 0.171 1 13483 13483 26.021 4.4306 1 2950500 + 8513 17460 5818 5941 9867 9867 0.05796513017708094 EIKPSREQL 9 Unmodified _EIKPSREQL_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.3088989257812 2 550.308938 1098.60332 -0.21652 -0.00011915 -0.22573 -0.00012422 -0.44225 -0.00024337 550.3088998159881 26.253 0.17789 26.253 26.208 26.386 0 14 8 2 0 0 0 0.047714 1 13505 13505 34.402 1.616 1 1931100 + 8514 17460 5818 5941 9868 9868 0.05796513017708094 EIKPSREQL 9 Unmodified _EIKPSREQL_ 0 0 0 REV__ENSG00000070018|ENST00000261349|LRP6 REV__ENSG00000070018|ENST00000261349|LRP6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 367.208384 1098.60332 -0.50935 -0.00018704 0.73853 0.0002712 0.22918 8.4158E-05 367.2084906585363 26.258 0.30295 26.258 26.125 26.428 0 0 0 NaN 26.021 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2950500 + 8515 17460 5818 5941 0.05796513017708094 EIKQMQEIKL 10 Unmodified _EIKQMQEIKL_ 0 0 0 REV__ENST00000460072.5_1_2:39996735-39997113:-|nuORF REV__ENST00000460072.5_1_2:39996735-39997113:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 630.3568725585938 2 630.355031 1258.69551 NaN NaN NaN NaN NaN NaN NaN 101.58 1 95.403 94.903 95.903 -6.1757 0 0 0 0.94014 1 68163 68163 6.2058 1.3088 1 + 8516 20295 5819 5942 9869 9869 0.07650855039719318 EIKSSVSSRSI 11 Unmodified _EIKSSVSSRSI_ 0 0 0 ENSG00000256223|ENST00000248211|ZNF10 ENSG00000256223|ENST00000248211|ZNF10 ENSG00000256223|ENST00000248211|ZNF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2230834960938 3 398.222582 1191.64592 0.81851 0.00032595 -0.81538 -0.0003247 0.0031286 1.2459E-06 398.22238031070617 18.352 0.52279 15.731 15.574 16.097 -2.6215 101 48 4 0 0 0 0.53952 1 9720 9720 8.2864 0 1 5701400 8517 10799 5820 5943 9870 9870 0.057758633553021355 EIKTISLLL 9 Unmodified _EIKTISLLL_ 0 0 0 REV__ENST00000491277.1_1_1:214706690-214706735:-|nuORF REV__ENST00000491277.1_1_1:214706690-214706735:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7079467773438 2 515.33135 1028.64815 NaN NaN NaN NaN NaN NaN NaN 64.258 1 64.258 63.758 64.758 0 0 0 0 0.83049 1 35835 35835 3.9444 1.0552 1 + 8518 27892 5821 5944 9871 9871 0.13496943831046337 EILDYYQKL 9 Unmodified _EILDYYQKL_ 0 0 0 nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8140869140625 2 592.813522 1183.61249 -0.054249 -3.216E-05 1.461 0.00086612 1.4068 0.00083396 592.8144886547265 78.591 0.22328 78.105 77.99 78.213 -0.48596 20 8 3 0 0 0 0.49272 1 43061 43061 7.9102 1.187 1 674480 8519 9997 5822 5945 9872 9872 0.02802861583381855 EILGFISYF 9 Unmodified _EILGFISYF_ 0 0 0 REV__ENSG00000124786|ENST00000644923|SLC35B3 REV__ENSG00000124786|ENST00000644923|SLC35B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.787109375 2 544.786776 1087.559 0.67493 0.00036769 -0.37631 -0.00020501 0.29862 0.00016268 544.7865901788033 80.436 0.32451 79.944 79.731 80.055 -0.49248 34 12 4 0 0 0 0.12841 1 44039 44039 30.225 7.0764 1 1531600 + 8520 19471 5823 5946 9873 9873 0.0187210887152105 EILGQPPA 8 Unmodified _EILGQPPA_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.4511108398438 1 824.451245 823.443968 -0.006851 -5.6483E-06 -0.52334 -0.00043147 -0.53019 -0.00043712 824.4508680324938 76.044 0.33342 76.044 75.914 76.248 0 30 14 3 0 0 0 0.55032 1 42368 42368 30.225 0 1 2394400 8521 8655 5824 5947 9874 9874 0.02518424460379265 EILGYWVEY 9 Unmodified _EILGYWVEY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7910766601562 2 586.28714 1170.55973 0.10178 5.9671E-05 1.3699 0.00080313 1.4716 0.00086281 586.2881896026472 91.01 0.33684 91.01 90.788 91.125 0 35 15 3 0 0 0 0.58865 1 50287 50287 2.0598 0 1 576230 8522 6400 5825 5948 9875 9875 -0.018730964794258398 EILHDATIF 9 Unmodified _EILHDATIF_ 0 0 0 REV__ENSG00000111911|ENST00000229633|HINT3 REV__ENSG00000111911|ENST00000229633|HINT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7770385742188 2 529.779482 1057.54441 0.78602 0.00041642 -2.9693 -0.0015731 -2.1833 -0.0011567 529.7782762683984 57.707 0.3973 57.641 57.378 57.775 -0.066036 43 19 3 0 0 0 0.25681 1 31397 31397 19.257 6.7254 1 5844600 + 8523 18778 5826 5949 9876 9876 0.017940367233904908 EILHDATIF 9 Unmodified _EILHDATIF_ 0 0 0 REV__ENSG00000111911|ENST00000229633|HINT3 REV__ENSG00000111911|ENST00000229633|HINT3 MSMS AL20221201_MKP_PDAC_01 4 529.7760009765625 2 529.779482 1057.54441 NaN NaN NaN NaN NaN NaN NaN 91.235 1 85.059 84.559 85.559 -6.1757 0 0 0 0.41346 1 60307 60307 19.257 1.1106 1 + 8524 18778 5826 5949 9877 9877 0.017940367233904908 EILKAPPGFLG 11 Unmodified _EILKAPPGFLG_ 0 0 0 ENSG00000124608|ENST00000244571|AARS2 ENSG00000124608|ENST00000244571|AARS2 ENSG00000124608|ENST00000244571|AARS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2257690429688 3 381.225375 1140.6543 NaN NaN NaN NaN NaN NaN NaN 71.856 1 71.856 71.356 72.356 0 0 0 0 0.93893 1 40018 40018 1.3296 0 1 8525 3806 5827 5950 9878 9878 0.08959462062557577 EILTKMRYFSN 11 Unmodified _EILTKMRYFSN_ 0 0 0 ENSG00000100209|ENST00000216027|HSCB ENSG00000100209|ENST00000216027|HSCB ENSG00000100209|ENST00000216027|HSCB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 701.8467407226562 2 701.363387 1400.71222 NaN NaN NaN NaN NaN NaN NaN 65.782 1 65.782 65.282 66.282 0 0 0 0 0.93613 1 36688 36688 5.2969 1.7098 1 8526 1769 5828 5951 9879 9879 0.027893559256881417 EIMALAEAML 10 Unmodified _EIMALAEAML_ 0 0 0 REV__nc|ENSG00000065675|Q04759-2|PRKCQ REV__nc|ENSG00000065675|Q04759-2|PRKCQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2807006835938 2 546.277403 1090.54025 0.34853 0.00019039 3.3941 0.0018541 3.7427 0.0020445 546.2790027073695 84.403 0.26697 83.904 83.753 84.02 -0.49961 24 11 3 0 0 0 0.69377 1 46164 46164 3.5965 0.60125 1 1019800 + 8527 17385 5829 5952 9880 9880 -0.0013951208618436794 EIMDWWPWYRT 11 Unmodified _EIMDWWPWYRT_ 0 0 0 ENST00000435844.3_2_20:18550009-18550057:+|nuORF ENST00000435844.3_2_20:18550009-18550057:+|nuORF ENST00000435844.3_2_20:18550009-18550057:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2442626953125 3 528.2431 1581.70747 0.29842 0.00015764 0.52645 0.00027809 0.82487 0.00043573 528.2432882467557 70.024 0.97346 70.024 69.713 70.686 0 253 76 5 0 0 0 0.73992 1 39185 39185 0.50596 0.051438 1 76399000 8528 13322 5830 5953 9881 9881 -0.06011528217095474 EIMPLGLL 8 Unmodified _EIMPLGLL_ 0 0 0 ENST00000470902.5_1_9:130911720-130912803:+|nuORF ENST00000470902.5_1_9:130911720-130912803:+|nuORF ENST00000470902.5_1_9:130911720-130912803:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.25927734375 2 443.259339 884.504126 1.3973 0.00061937 -0.94527 -0.000419 0.45203 0.00020036 443.25902062936177 97.12 0.16708 90.944 90.877 91.044 -6.1757 17 9 2 0 0 0 0.78849 1 64377 64377 9.3474 6.77 1 15653000 8529 13863 5831 5954 9882 9882 0.05725398799256709 EIMRRSPL 8 Unmodified _EIMRRSPL_ 0 0 0 REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.2778625488281 2 501.281669 1000.54878 NaN NaN NaN NaN NaN NaN NaN 26.079 1 23.128 22.628 23.628 -2.9511 0 0 0 0.59568 1 14332 14332 34.402 5.9149 1 + 8530 24971 5832 5955 9883 9883 0.04853222665303747 EINAADMENL 10 Unmodified _EINAADMENL_ 0 0 0 REV__nc|ENSG00000085982|Q9NVE5|USP40 REV__nc|ENSG00000085982|Q9NVE5|USP40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7981567382812 2 560.252971 1118.49139 0.65444 0.00036665 0.87809 0.00049195 1.5325 0.0008586 560.7553562090418 88.107 0.24336 87.602 87.482 87.725 -0.50423 23 9 3 0 0 0 0.22489 1 48224 48224 18.146 3.5647 1 615670 + 8531 17759 5833 5956 9884 9884 -0.06311709121587228 EINASRCYEEF 11 Unmodified _EINASRCYEEF_ 0 0 0 REV__nc|ENSG00000054267|Q4LE39-4|ARID4B REV__nc|ENSG00000054267|Q4LE39-4|ARID4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.1992797851562 3 454.199448 1359.57652 1.2941 0.00058776 -0.13699 -6.2221E-05 1.1571 0.00052554 454.1993938539414 49.489 0.34783 44.093 43.936 44.284 -5.3961 35 21 2 0 0 0 0.65706 2 31026 30899;31026 8.2864 0.80937 1 58617000 + 8532 17281 5834 5957 9885;9886 9886 -0.08888963655795123 EINHKHWF 8 Unmodified _EINHKHWF_ 0 0 0 REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3 REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2579345703125 2 555.777608 1109.54066 0.68977 0.00038336 -0.91766 -0.00051002 -0.22789 -0.00012666 555.7772272083015 86.912 0.41473 86.409 86.217 86.632 -0.50318 41 16 3 0 0 0 0.80143 1 47460 47460 5.7604 1.0044 1 2554600 + 8533 17849 5835 5958 9887 9887 -0.009725882598331737 EINHKHWF 8 Unmodified _EINHKHWF_ 0 0 0 REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3 REV__nc|ENSG00000117625|Q9P2K3-2|RCOR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2579345703125 2 555.777608 1109.54066 0.68977 0.00038336 -0.91766 -0.00051002 -0.22789 -0.00012666 555.7772272083015 86.912 0.41473 86.409 86.217 86.632 -0.50318 41 16 3 0 0 0 8.7369 1 47460 47460 5.7604 1.0044 1 2554600 + 8534 17849 5835 5958 9888 9888 -0.009725882598331737 EINNQTSKCI 10 Unmodified _EINNQTSKCI_ 0 0 0 ENSG00000205784|ENST00000650722|ARRDC5;nc|ENSG00000205784|A6NEK1|ARRDC5 ENSG00000205784|ENST00000650722|ARRDC5 ENSG00000205784|ENST00000650722|ARRDC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2802124023438 2 575.282063 1148.54957 NaN NaN NaN NaN NaN NaN NaN 60.632 1 60.142 59.642 60.642 -0.48932 0 0 0 0.96981 1 33020 33020 3.9444 0 1 8535 10383 5836 5959 9889 9889 -0.01876027476305353 EINNRPYEL 9 Unmodified _EINNRPYEL_ 0 0 0 REV__nc|ENSG00000030304|O15146-3|MUSK REV__nc|ENSG00000030304|O15146-3|MUSK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2893676757812 2 574.290745 1146.56694 NaN NaN NaN NaN NaN NaN NaN 91.381 1 90.886 90.386 91.386 -0.49457 0 0 0 0.83049 1 49949 49949 3.9444 1.3669 1 + 8536 17143 5837 5960 9890 9890 -0.00048363879000135057 EINRFHHTP 9 Unmodified _EINRFHHTP_ 0 0 0 REV__ENSG00000163812|ENST00000424952|ZDHHC3 REV__ENSG00000163812|ENST00000424952|ZDHHC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1965637207031 3 384.19659 1149.56794 0.57999 0.00022283 0.57762 0.00022192 1.1576 0.00044475 384.53085306148114 15.961 0.16516 13.404 13.305 13.47 -2.557 50 35 2 0 0 0 0.51218 1 8226 8226 4.1895 0.86986 1 5573000 + 8537 21818 5838 5961 9891 9891 -0.0008610471943484299 EINRGNRPRF 10 Unmodified _EINRGNRPRF_ 0 0 0 REV__ENSG00000204640|ENST00000376865|NMS REV__ENSG00000204640|ENST00000376865|NMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8419189453125 2 629.841802 1257.66905 0.68984 0.00043449 -0.61723 -0.00038876 0.072615 4.5736E-05 629.8417886500963 100.74 0.11418 100.7 100.63 100.74 -0.04216 5 3 2 0 0 0 0.70951 1 55984 55984 1.8442 0 1 2491000 + 8538 24193 5839 5962 9892 9892 0.050523469832796764 EINSYLEIK 9 Unmodified _EINSYLEIK_ 0 0 0 REV__ENSG00000069206|ENST00000175238|ADAM7 REV__ENSG00000069206|ENST00000175238|ADAM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.79833984375 2 554.797872 1107.58119 NaN NaN NaN NaN NaN NaN NaN 60.164 1 59.673 59.173 60.173 -0.49079 0 0 0 0.46232 1 32753 32753 17.113 1.2657 1 + 8539 17448 5840 5963 9893 9893 0.031702885492677524 EIPEQLVP 8 Unmodified _EIPEQLVP_ 0 0 0 nc|ENSG00000122435|Q9NUP7-2|TRMT13;ENSG00000122435|ENST00000370141|TRMT13 nc|ENSG00000122435|Q9NUP7-2|TRMT13 nc|ENSG00000122435|Q9NUP7-2|TRMT13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.5042114257812 1 924.503674 923.496398 0.34795 0.00032169 -0.46023 -0.00042549 -0.11228 -0.0001038 924.5030774723845 69.272 0.31999 69.272 69.103 69.423 0 28 13 3 0 0 0 0.15558 2 38556 38556;38661 85.357 18.013 1 2642600 8540 3638 5841 5964 9894;9895 9894 0.03158962803331633 EIPLCTVSY 9 Unmodified _EIPLCTVSY_ 0 0 0 ENST00000380050.7_1_7:90837844-90837937:+|nuORF ENST00000380050.7_1_7:90837844-90837937:+|nuORF ENST00000380050.7_1_7:90837844-90837937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.754638671875 2 512.754618 1023.49468 0.51893 0.00026608 -0.52784 -0.00027065 -0.0089103 -4.5688E-06 512.754556124297 72.782 0.55087 72.306 71.878 72.429 -0.47588 42 25 2 0 0 0 0.49272 1 39884 39884 7.9102 1.5561 1 2825100 8541 12586 5842 5965 9896 9896 -0.016124142769172067 EIPLRTRL 8 Unmodified _EIPLRTRL_ 0 0 0 ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;nc|ENSG00000142185|O94759-3|TRPM2 ENSG00000142185|ENST00000397928|TRPM2 ENSG00000142185|ENST00000397928|TRPM2 MSMS AL20221201_MKP_PDAC_01 4 499.3104248046875 2 499.311284 996.608014 NaN NaN NaN NaN NaN NaN NaN 103.43 1 97.253 96.753 97.753 -6.1757 0 0 0 0.97444 1 69346 69346 2.3027 0 1 8542 5397 5843 5966 9897 9897 0.10957441951120472 EIPPPSVPKE 10 Unmodified _EIPPPSVPKE_ 0 0 0 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.802734375 2 546.800414 1091.58628 0.74147 0.00040544 -0.5748 -0.0003143 0.16667 9.1136E-05 546.8000037965985 80.935 1.0705 74.759 73.942 75.013 -6.1757 103 60 3 0 0 0 0.48505 1 52751 52751 17.113 2.2746 1 86841000 + 8543 23835 5844 5967 9898 9898 0.04414592411899321 EIPRKKKG 8 Unmodified _EIPRKKKG_ 0 0 0 REV__nc|ENSG00000165521|Q05BV3|EML5 REV__nc|ENSG00000165521|Q05BV3|EML5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.3079528808594 2 478.306001 954.597449 -0.58835 -0.00028141 2.3138 0.0011067 1.7254 0.00082529 478.3068284768684 101.92 0.53452 101.88 101.64 102.17 -0.045853 40 17 3 0 0 0 0.80992 1 56609 56609 0.69038 0 1 1699400 + 8544 22017 5845 5968 9899 9899 0.11833459296713045 EIPTDTSLEK 10 Unmodified _EIPTDTSLEK_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7865600585938 2 566.790244 1131.56593 0.31253 0.00017714 -3.3471 -0.0018971 -3.0346 -0.00172 566.7877165815114 79.873 0.3152 79.873 79.662 79.977 0 33 13 3 0 0 0 0.40136 1 44387 44387 21.537 6.2885 1 3497500 8545 8860 5846 5969 9900 9900 0.005413769614506236 EIPTNIPG 8 Unmodified _EIPTNIPG_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.4484252929688 1 840.44616 839.438883 0.51737 0.00043482 -0.49639 -0.00041719 0.020982 1.7635E-05 840.4457665484722 54.082 0.41007 54.082 53.899 54.309 0 55 18 4 0 0 0 0.14054 1 29948 29948 88.904 3.5469 1 45378000 8546 8957 5847 5970 9901 9901 0.012741205977818026 EIPTNIPG 8 Unmodified _EIPTNIPG_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.44677734375 1 840.44616 839.438883 0.84979 0.0007142 0.27506 0.00023117 1.1249 0.00094538 840.4461690068824 62.286 0.47758 56.111 55.921 56.398 -6.1757 58 26 3 0 0 0 0.17954 1 40220 40220 78.149 0.16506 1 83165000 8547 8957 5847 5970 9902 9902 0.012741205977818026 EIQQQLLHYQT 11 Unmodified _EIQQQLLHYQT_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;ENST00000464333.5_1_22:32012607-32014401:+|nuORF nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.5779418945312 3 467.577136 1399.70958 0.61323 0.00028673 0.89582 0.00041886 1.509 0.00070559 467.5776668777793 48.956 0.31012 43.56 43.407 43.717 -5.3961 31 19 2 0 0 0 0.44182 1 30539 30539 15.538 10.491 1 65293000 8548 10049 5848 5971 9903 9903 0.025712237923926295 EIQQQQWPAL 10 Unmodified _EIQQQQWPAL_ 0 0 0 REV__ENSG00000111860|ENST00000368491|CEP85L REV__ENSG00000111860|ENST00000368491|CEP85L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 414.685546875 3 414.215539 1239.62479 1.4048 0.0005819 1.9662 0.00081443 3.371 0.0013963 414.21594369198124 37.119 0.39119 32.835 32.632 33.023 -4.2835 36 23 2 0 0 0 0.23723 1 21634 21634 1.9064 0 1 7774600 + 8549 18773 5849 5972 9904 9904 0.01455898046447146 EIQSFIYS 8 Unmodified _EIQSFIYS_ 0 0 0 ENSG00000105255|ENST00000221856|FSD1 ENSG00000105255|ENST00000221856|FSD1 ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7447814941406 2 493.745108 985.475663 0.24744 0.00012217 0.89695 0.00044286 1.1444 0.00056504 493.74541306013145 65.984 0.22233 65.5 65.385 65.607 -0.48428 13 9 2 0 0 0 0.58902 1 36031 36031 26.884 2.2098 1 1577600 8550 2295 5850 5973 9905 9905 -0.017656275763329177 EIQYKFSTMV 10 Unmodified _EIQYKFSTMV_ 0 0 0 REV__ENSG00000188315|ENST00000343010|C3orf62 REV__ENSG00000188315|ENST00000343010|C3orf62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3120727539062 2 623.312832 1244.61111 0.51717 0.00032236 -1.1453 -0.00071391 -0.62818 -0.00039155 623.3120641170525 61.106 0.29581 61.063 60.866 61.162 -0.04351 48 14 5 0 0 0 0.11824 1 33282 33282 43.772 25.626 1 44801000 + 8551 23704 5851 5974 9906 9906 -0.0014109577703038667 EIQYKFSTMV 10 Unmodified _EIQYKFSTMV_ 0 0 0 REV__ENSG00000188315|ENST00000343010|C3orf62 REV__ENSG00000188315|ENST00000343010|C3orf62 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 623.312832 1244.61111 0.53186 0.00033152 -3.0446 -0.0018977 -2.5128 -0.0015662 623.3111254044821 60.862 0.28082 60.862 60.743 61.024 0 -0.11942 -0.0014569 NaN 43.772 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1985900 + 8552 23704 5851 5974 -0.0014109577703038667 EIQYKFSTMV 10 Unmodified _EIQYKFSTMV_ 0 0 0 REV__ENSG00000188315|ENST00000343010|C3orf62 REV__ENSG00000188315|ENST00000343010|C3orf62 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 623.312832 1244.61111 -0.10756 -6.7041E-05 -1.8539 -0.0011556 -1.9615 -0.0012226 623.3116278418219 61.509 0.40285 61.02 60.818 61.221 -0.48932 0.038125 2.7453E-05 NaN 43.772 66 18 5 NaN NaN NaN NaN 0 NaN NaN 0 53691000 + 8553 23704 5851 5974 -0.0014109577703038667 EIQYKFSTMV 10 Unmodified _EIQYKFSTMV_ 0 0 0 REV__ENSG00000188315|ENST00000343010|C3orf62 REV__ENSG00000188315|ENST00000343010|C3orf62 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 623.312832 1244.61111 0.51717 0.00032236 -1.1453 -0.00071391 -0.62818 -0.00039155 623.3120641170525 61.106 0.29581 61.063 60.866 61.162 -0.04351 0.081296 0.00091076 NaN 43.772 48 14 5 NaN NaN NaN NaN 0 NaN NaN 0 44801000 + 8554 23704 5851 5974 -0.0014109577703038667 EIREELEQY 9 Unmodified _EIREELEQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A;ENST00000486964.5_1_2:86305209-86332944:-|nuORF;ENST00000424089.5_1_2:86315699-86317049:-|nuORF ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS AL20221201_MKP_PDAC_01 4 604.7943725585938 2 604.793318 1207.57208 NaN NaN NaN NaN NaN NaN NaN 44.259 1 39.407 38.907 39.907 -4.852 0 0 0 0.044471 1 26997 26997 60.074 18.234 1 8555 983 5852 5975 9907 9907 -0.02340104807035459 EIRGCIEK 8 Unmodified _EIRGCIEK_ 0 0 0 nc|ENSG00000099365|P61266-2|STX1B;ENSG00000099365|ENST00000215095|STX1B nc|ENSG00000099365|P61266-2|STX1B nc|ENSG00000099365|P61266-2|STX1B MSMS AL20221201_MKP_PDAC_01 4 474.2516174316406 2 474.252577 946.490601 NaN NaN NaN NaN NaN NaN NaN 21.323 1 18.588 18.088 19.088 -2.7348 0 0 0 0.7268 1 11408 11408 26.884 1.4843 1 8556 1697 5853 5976 9908 9908 0.015215410200198676 EIRPGGNYTIT 11 Unmodified _EIRPGGNYTIT_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8179321289062 2 610.817127 1219.6197 1.0951 0.00066891 -0.73568 -0.00044937 0.35942 0.00021954 610.8168488582819 20.697 0.50042 18.004 17.685 18.186 -2.693 53 30 2 0 0 0 0.72309 1 10911 10911 2.086 0.24177 1 2997800 8557 6400 5854 5977 9909 9909 0.018675941838182553 EIRRLRGQL 9 Unmodified _EIRRLRGQL_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MSMS AL20221201_MKP_PDAC_01 4 380.9032592773438 3 380.903518 1139.68872 NaN NaN NaN NaN NaN NaN NaN 23.526 1 20.698 20.198 21.198 -2.8273 0 0 0 0.84021 1 12737 12737 2.7352 0 1 8558 6082 5855 5978 9910 9910 0.124467229940592 EIRVNHEPE 9 Unmodified _EIRVNHEPE_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;BIN1|p.T468Wfs*18|1|0.08|ENSG00000136717|chr2:127051217-127051218|-/CCCG|frameshift_variant nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3045654296875 2 561.780544 1121.54654 0.7424 0.00041706 1.3769 0.00077354 2.1193 0.0011906 561.7813151247408 52.133 0.33274 51.7 51.631 51.964 -0.43367 30 16 2 0 0 0 0.19758 1 28281 28281 13.042 1.4022 1 2212600 8559 4848 5856 5979 9911 9911 -0.009375345387979905 EISEVQLVY 9 Unmodified _EISEVQLVY_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2860107421875 2 540.284597 1078.55464 0.16786 9.0694E-05 1.6441 0.0008883 1.812 0.000979 540.2857773320209 64.831 0.34145 64.831 64.672 65.013 0 42 15 4 0 0 0 0.06187 1 36144 36144 42.095 15.211 1 5675400 8560 6489 5857 5980 9912 9912 0.01850599657973362 EISEVQLVY 9 Unmodified _EISEVQLVY_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2855224609375 2 540.284597 1078.55464 0.89081 0.00048129 0.53424 0.00028864 1.425 0.00076993 540.2848533585146 71.991 0.34742 65.815 65.676 66.024 -6.1757 25 18 2 0 0 0 0.0095811 1 47089 47089 81.613 26.84 1 23109000 8561 6489 5857 5980 9913 9913 0.01850599657973362 EISFLKKV 8 Unmodified _EISFLKKV_ 0 0 0 ENSG00000277586|ENST00000610854|NEFL ENSG00000277586|ENST00000610854|NEFL ENSG00000277586|ENST00000610854|NEFL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2612609863281 2 482.29731 962.580068 0.58367 0.0002815 -0.4781 -0.00023059 0.10557 5.0918E-05 482.2970460439026 87.738 0.55891 87.234 86.923 87.482 -0.50423 39 26 2 0 0 0 8.7369 1 47832 47832 5.7604 0 1 499080 8562 10926 5858 5981 9914 9914 0.09728118971042932 EISKHECFF 9 Unmodified _EISKHECFF_ 0 0 0 REV__ENSG00000257315|ENST00000550078|ZBED6 REV__ENSG00000257315|ENST00000550078|ZBED6 MSMS AL20221201_MKP_PDAC_01 4 569.7976684570312 2 570.263142 1138.51173 NaN NaN NaN NaN NaN NaN NaN 86.139 1 79.963 79.463 80.463 -6.1757 0 0 0 0.7243 1 56779 56779 8.5933 0.68312 1 + 8563 24563 5859 5982 9915 9915 -0.05198493671127835 EISLSKGEK 9 Unmodified _EISLSKGEK_ 0 0 0 ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.5482177734375 1 990.546602 989.539325 0.0019962 1.9773E-06 -3.6968 -0.0036619 -3.6948 -0.0036599 990.5434824314573 79.293 0.30353 79.293 79.142 79.446 0 23 12 3 0 0 0 0.41742 1 44017 44017 11.64 0.81637 1 1200200 8564 6805 5860 5983 9916 9916 0.0441373286076896 EISPELQKRL 10 Unmodified _EISPELQKRL_ 0 0 0 ENSG00000128602|ENST00000249373|SMO ENSG00000128602|ENST00000249373|SMO ENSG00000128602|ENST00000249373|SMO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.859375 3 404.903072 1211.68739 0.24536 9.9347E-05 3.1022 0.0012561 3.3475 0.0013554 404.9045489724528 47.967 0.18316 47.928 47.805 47.988 -0.038647 12 8 2 0 0 0 0.2384 1 25870 25870 5.4027 1.8157 1 1702400 8565 4077 5861 5984 9917 9917 0.09001044114620527 EISSSTSIM 9 Unmodified _EISSSTSIM_ 0 0 0 ENST00000469327.5_1_17:17924942-17928629:-|nuORF;ENST00000488753.1_1_17:17924276-17929760:-|nuORF;ENSG00000171953|ENST00000474627|ATPAF2 ENST00000469327.5_1_17:17924942-17928629:-|nuORF ENST00000469327.5_1_17:17924942-17928629:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 477.7263488769531 2 477.726058 953.437562 NaN NaN NaN NaN NaN NaN NaN 49.729 1 44.19 43.69 44.69 -5.5391 0 0 0 0.20498 1 31101 31101 30.225 1.738 1 8566 8166 5862 5985 9918 9918 -0.04101881553287967 EITFRQSF 8 Unmodified _EITFRQSF_ 0 0 0 ENST00000472823.5_1_6:29576484-29596894:-|nuORF;nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 ENST00000472823.5_1_6:29576484-29596894:-|nuORF ENST00000472823.5_1_6:29576484-29596894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2657470703125 2 514.263999 1026.51345 NaN NaN NaN NaN NaN NaN NaN 52.974 1 52.522 52.022 53.022 -0.45173 0 0 0 0.95607 1 28642 28642 9.3474 0.75416 1 8567 10317 5863 5986 9919 9919 0.0012488340912568674 EITHVSQALL 10 Unmodified _EITHVSQALL_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2745361328125 2 555.811313 1109.60807 0.3355 0.00018648 3.6434 0.002025 3.9789 0.0022115 556.314881879493 66.296 0.25941 65.813 65.686 65.946 -0.48323 19 14 2 0 0 0 0.21783 1 36251 36251 24.021 5.8742 1 3498300 8568 10207 5864 5987 9920 9920 0.057653971604850085 EITLILPEL 9 Unmodified _EITLILPEL_ 0 0 0 REV__ENSG00000138356|ENST00000374700|AOX1 REV__ENSG00000138356|ENST00000374700|AOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.8157348632812 2 520.815533 1039.61651 0.27546 0.00014346 -0.75066 -0.00039096 -0.4752 -0.00024749 520.8151846425022 97.325 0.35797 97.082 96.886 97.244 -0.24277 36 15 3 0 0 0 0.016184 1 53109 53109 67.344 13.768 1 2580300 + 8569 20324 5865 5988 9921 9921 0.09828951077088277 EITLILPEL 9 Unmodified _EITLILPEL_ 0 0 0 REV__ENSG00000138356|ENST00000374700|AOX1 REV__ENSG00000138356|ENST00000374700|AOX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.815533 1039.61651 0.39199 0.00020416 -0.33317 -0.00017352 0.058827 3.0638E-05 520.8153761876725 96.94 0.25073 96.94 96.79 97.041 0 -0.071065 0.00024601 NaN 67.344 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 573330 + 8570 20324 5865 5988 0.09828951077088277 EITLILPEL 9 Unmodified _EITLILPEL_ 0 0 0 REV__ENSG00000138356|ENST00000374700|AOX1 REV__ENSG00000138356|ENST00000374700|AOX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.815533 1039.61651 0.27546 0.00014346 -0.75066 -0.00039096 -0.4752 -0.00024749 520.8151846425022 97.325 0.35797 97.082 96.886 97.244 -0.24277 0.071065 -0.00018887 NaN 67.344 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2580300 + 8571 20324 5865 5988 0.09828951077088277 EITLYLIIA 9 Unmodified _EITLYLIIA_ 0 0 0 ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 ENSG00000243232|ENST00000289269|PCDHAC2 ENSG00000243232|ENST00000289269|PCDHAC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.790771484375 2 524.818076 1047.6216 0.5978 0.00031374 -1.9465 -0.0010216 -1.3487 -0.00070783 524.8169760860055 46.174 0.26395 41.219 41.091 41.355 -4.9549 24 17 2 0 0 0 0.19613 1 28556 28556 1.8442 0 1 9828800 8572 10706 5866 5989 9922 9922 0.09969254939710481 EITPFLMFII 10 Unmodified _EITPFLMFII_ 0 0 0 ENSG00000132681|ENST00000368081|ATP1A4;ENST00000418334.5_1_1:160144048-160152563:+|nuORF ENSG00000132681|ENST00000368081|ATP1A4 ENSG00000132681|ENST00000368081|ATP1A4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 611.8224487304688 2 612.340861 1222.66717 1.5978 0.00097837 3.4338 0.0021026 5.0315 0.003081 612.3435271532812 100.88 0.097038 94.708 94.651 94.748 -6.1757 11 5 3 0 0 0 0.21571 1 67533 67533 9.3831 0 1 39117000 8573 4438 5867 5990 9923 9923 0.06474157130446656 EITYGPTFCL 10 Unmodified _EITYGPTFCL_ 0 0 0 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 MSMS AL20221201_MKP_PDAC_01 4 572.2718505859375 2 572.273175 1142.5318 NaN NaN NaN NaN NaN NaN NaN 72.525 1 66.349 65.849 66.849 -6.1757 0 0 0 0.7417 1 47450 47450 14.838 3.198 1 + 8574 20046 5868 5991 9924 9924 -0.033767427311431675 EITYSVYM 8 Unmodified _EITYSVYM_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2359619140625 2 503.233519 1004.45248 0.38772 0.00019511 -0.17085 -8.5979E-05 0.21686 0.00010913 503.2343161600214 64.937 0.41042 64.937 64.809 65.219 0 35 18 2 0 0 0 0.72953 1 36220 36220 14.582 2.0501 1 2356000 8575 9593 5869 5992 9925 9925 -0.049563896852987455 EITYSVYM 8 Unmodified _EITYSVYM_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.233519 1004.45248 -0.30659 -0.00015429 -1.3383 -0.00067349 -1.6449 -0.00082778 503.23320580824145 65.638 0.33055 65.154 64.959 65.289 -0.48428 0.10838 -0.00058911 NaN 14.582 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 852560 8576 9593 5869 5992 -0.049563896852987455 EIVKEVSTY 9 Unmodified _EIVKEVSTY_ 0 0 0 ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENST00000547505.2_1_12:44053979-44054081:+|nuORF ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2864379882812 2 534.284597 1066.55464 -0.26463 -0.00014139 2.8055 0.0014989 2.5409 0.0013576 534.2870214070979 33.539 0.13315 33.539 33.515 33.648 0 23 15 2 0 0 0 0.07087 1 17611 17611 39.95 19.496 1 17170000 8577 6461 5870 5993 9926 9926 0.024025996579666753 EIVTEELEE 9 Unmodified _EIVTEELEE_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1090.684814453125 1 1090.51503 1089.50775 -0.42652 -0.00046513 -4.3027 -0.0046922 -4.7292 -0.0051573 1090.5084143513257 79.813 0.3482 79.813 79.588 79.936 0 22 14 2 0 0 0 0.21564 1 44362 44362 3.9444 1.3669 1 571180 8578 7991 5871 5994 9927 9927 -0.03342304683860675 EIWHPVSLF 9 Unmodified _EIWHPVSLF_ 0 0 0 REV__nc|ENSG00000172780|Q86YS6-2|RAB43 REV__nc|ENSG00000172780|Q86YS6-2|RAB43 MSMS AL20221201_MKP_PDAC_01 4 564.2998046875 2 564.297842 1126.58113 NaN NaN NaN NaN NaN NaN NaN 98.817 1 92.641 92.141 93.141 -6.1757 0 0 0 0.46757 1 65618 65618 16.942 3.4344 1 + 8579 22675 5872 5995 9928 9928 0.02290333339942663 EIWLRAKLF 9 Unmodified _EIWLRAKLF_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3492431640625 2 588.350409 1174.68626 NaN NaN NaN NaN NaN NaN NaN 103.28 1 103.23 102.73 103.73 -0.047928 0 0 0 0.85798 1 57354 57354 0.52476 0 1 + 8580 17456 5873 5996 9929 9929 0.10590874536364936 EIWREEIW 8 Unmodified _EIWREEIW_ 0 0 0 ENST00000477545.1_1_13:19255671-19255737:+|nuORF ENST00000477545.1_1_13:19255671-19255737:+|nuORF ENST00000477545.1_1_13:19255671-19255737:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.289794921875 2 580.790381 1159.56621 0.4235 0.00024596 1.0292 0.00059773 1.4527 0.00084369 580.7911629346856 92.062 0.050232 91.581 91.558 91.608 -0.48092 4 2 2 0 0 0 8.7369 1 50313 50313 0.69038 0 1 266670 8581 13997 5874 5997 9930 9930 -0.0071915852806796465 EIWSFNLRM 9 Unmodified _EIWSFNLRM_ 0 0 0 REV__ENST00000607166.1_1_10:31607359-31607734:-|nuORF REV__ENST00000607166.1_1_10:31607359-31607734:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2976684570312 2 598.300059 1194.58556 0.55808 0.0003339 -2.718 -0.0016262 -2.1599 -0.0012923 598.2987364143715 21.777 0.25783 19.042 18.9 19.158 -2.7348 20 13 2 0 0 0 0.53557 1 11658 11658 2.0598 0 1 2108600 + 8582 29308 5875 5998 9931 9931 -0.003945255087955957 EIYAFLYI 8 Unmodified _EIYAFLYI_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|21 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2966918945312 2 516.276044 1030.53753 0.4032 0.00020816 -2.1564 -0.0011133 -1.7532 -0.00090515 516.7766476423809 87.462 0.24966 86.958 86.788 87.038 -0.50423 13 10 2 0 0 0 0.80232 2 47823 47823;47842 5.2307 1.2863 1 270770 + 8583 16804 5876 5999 9932;9933 9932 0.02348723842783329 EIYAFLYI 8 Unmodified _EIYAFLYI_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|21 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|21 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.276044 1030.53753 0.4032 0.00020816 -2.1564 -0.0011133 -1.7532 -0.00090515 516.7766476423809 87.462 0.24966 86.958 86.788 87.038 -0.50423 0 0 NaN 5.2307 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 270770 + 8584 16804 5876 5999 0.02348723842783329 EIYCHYCNQ 9 Unmodified _EIYCHYCNQ_ 0 0 0 nc|ENSG00000132530|Q6GPH4-2|XAF1;nc|ENSG00000132530|Q6GPH4-7|XAF1;ENSG00000132530|ENST00000361842|XAF1;nc|ENSG00000132530|Q6GPH4-6|XAF1;ENST00000575369.5_1_17:6662992-6674357:+|nuORF nc|ENSG00000132530|Q6GPH4-2|XAF1 nc|ENSG00000132530|Q6GPH4-2|XAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7288818359375 2 586.728609 1171.44266 NaN NaN NaN NaN NaN NaN NaN 95.577 1 95.209 94.709 95.709 -0.36814 0 0 0 0.85737 1 52203 52203 0.6015 0 1 8585 4419 5877 6000 9934 9934 -0.1361990096233967 EIYGKAAA 8 Unmodified _EIYGKAAA_ 0 0 0 REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7218017578125 2 411.721436 821.428318 1.4892 0.00061313 -0.89838 -0.00036988 0.59081 0.00024325 411.72132109576836 35.814 0.41282 31.621 31.44 31.853 -4.1928 40 25 2 0 0 0 0.6895 2 20812 20812;20945 18.135 1.1927 1 17962000 + 8586 19497 5878 6001 9935;9936 9935 0.010461379433195361 EIYGKAAA 8 Unmodified _EIYGKAAA_ 0 0 0 REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C REV__nc|ENSG00000125503|Q9BZL4-5|PPP1R12C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.8899841308594 2 411.721436 821.428318 1.4892 0.00061313 -0.89838 -0.00036988 0.59081 0.00024325 411.72132109576836 35.814 0.41282 31.621 31.44 31.853 -4.1928 40 25 2 0 0 0 8.7369 1 20762 20762 18.135 1.1927 1 17962000 + 8587 19497 5878 6001 9937 9937 0.010461379433195361 EIYIKEIKS 9 Unmodified _EIYIKEIKS_ 0 0 0 ENSG00000053524|ENST00000328913|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.4906921386719 3 374.885018 1121.63323 -0.31102 -0.0001166 -0.29326 -0.00010994 -0.60428 -0.00022654 374.8850018178451 40.685 0.19138 40.685 40.529 40.72 0 13 10 2 0 0 0 0.21641 1 21855 21855 2.086 0 1 2162600 8588 747 5879 6002 9938 9938 0.07727451963046406 EIYLDAGYF 9 Unmodified _EIYLDAGYF_ 0 0 0 REV__nc|ENSG00000100320|O43251-7|RBFOX2 REV__nc|ENSG00000100320|O43251-7|RBFOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7575073242188 2 545.758215 1089.50188 1.2327 0.00067275 -0.93748 -0.00051164 0.29521 0.00016112 545.7577644752104 88.043 0.43965 81.867 81.673 82.113 -6.1757 42 24 2 0 0 0 0.30562 1 58202 58202 16.942 1.1741 1 17732000 + 8589 29533 5880 6003 9939 9939 -0.03929358404866434 EIYNEQVRD 9 Unmodified _EIYNEQVRD_ 0 0 0 nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12 nc|ENSG00000136883|Q96FN5|KIF12 nc|ENSG00000136883|Q96FN5|KIF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1866455078125 3 389.187649 1164.54112 NaN NaN NaN NaN NaN NaN NaN 73.224 1 72.748 72.248 73.248 -0.47588 0 0 0 0.84892 1 40069 40069 0.86438 0.23755 1 8590 4876 5881 6004 9940 9940 -0.034572581212842124 EKADPNLNSK 10 Unmodified _EKADPNLNSK_ 0 0 0 REV__ENSG00000124374|ENST00000244221|PAIP2B REV__ENSG00000124374|ENST00000244221|PAIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2883911132812 2 558.288202 1114.56185 0.60823 0.00033957 -0.96333 -0.00053782 -0.3551 -0.00019825 558.2877609600953 38.343 0.22288 38.343 38.235 38.458 0 34 21 2 0 0 0 0.32493 1 20450 20450 26.021 4.2741 1 9731900 + 8591 19441 5882 6005 9941 9941 0.009153322583642876 EKAELIAQL 9 Unmodified _EKAELIAQL_ 0 0 0 REV__nc|ENSG00000130810|Q9NQ55-2|PPAN REV__nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7952575683594 2 507.795132 1013.57571 0.575 0.00029198 -0.12129 -6.1591E-05 0.4537 0.00023039 507.79506851611626 74.748 0.56286 74.748 74.497 75.06 0 79 27 5 0 0 0 0.020973 1 41532 41532 62.573 7.7991 1 27058000 + 8592 19745 5883 6006 9942 9942 0.06946609757460465 EKAELIAQL 9 Unmodified _EKAELIAQL_ 0 0 0 REV__nc|ENSG00000130810|Q9NQ55-2|PPAN REV__nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7952270507812 2 507.795132 1013.57571 0.88008 0.0004469 -0.13192 -6.6986E-05 0.74816 0.00037991 507.79506127616867 83.602 1.8176 77.426 76.747 78.564 -6.1757 281 99 5 0 0 0 0.025842 1 54722 54722 57.722 3.8892 1 286790000 + 8593 19745 5883 6006 9943 9943 0.06946609757460465 EKAFSMVEMWR 11 Unmodified _EKAFSMVEMWR_ 0 0 0 ENST00000395472.2_1_14:55513776-55513842:+|nuORF ENST00000395472.2_1_14:55513776-55513842:+|nuORF ENST00000395472.2_1_14:55513776-55513842:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.3367309570312 2 707.336315 1412.65808 0.23234 0.00016434 0.38579 0.00027288 0.61813 0.00043722 707.3365895428863 50.997 0.36445 50.584 50.394 50.758 -0.41351 55 17 4 0 0 0 0.39452 1 27434 27434 21.537 9.2963 1 19384000 8594 12769 5884 6007 9944 9944 -0.03174559497551854 EKAFSMVEMWR 11 Unmodified _EKAFSMVEMWR_ 0 0 0 ENST00000395472.2_1_14:55513776-55513842:+|nuORF ENST00000395472.2_1_14:55513776-55513842:+|nuORF ENST00000395472.2_1_14:55513776-55513842:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 707.336315 1412.65808 0.94846 0.00067088 -1.0693 -0.00075634 -0.12082 -8.5458E-05 707.3358160863573 50.644 0.15838 50.59 50.49 50.648 -0.053871 0.087232 -0.0016825 NaN 21.537 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1247400 8595 12769 5884 6007 -0.03174559497551854 EKAGMDMTY 9 Unmodified _EKAGMDMTY_ 0 0 0 ENSG00000162723|ENST00000368093|SLAMF9 ENSG00000162723|ENST00000368093|SLAMF9 ENSG00000162723|ENST00000368093|SLAMF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2225952148438 2 523.220085 1044.42562 NaN NaN NaN NaN NaN NaN NaN 53.942 1 53.475 52.975 53.975 -0.46664 0 0 0 0.67877 1 29205 29205 10.074 0.72649 1 8596 6900 5885 6008 9945 9945 -0.09481821568147097 EKAHKGSV 8 Unmodified _EKAHKGSV_ 0 0 0 REV__ENST00000300119.7_1_12:57424032-57430744:-|nuORF REV__ENST00000300119.7_1_12:57424032-57430744:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2374877929688 2 428.237784 854.461016 NaN NaN NaN NaN NaN NaN NaN 25.163 1 25.163 24.663 25.663 0 0 0 0 0.83301 1 12890 12890 21.747 2.3847 1 + 8597 25303 5886 6009 9946 9946 0.027963450661900424 EKAMDKSKKI 10 Unmodified _EKAMDKSKKI_ 0 0 0 REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3 REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3 MSMS AL20221201_MKP_PDAC_01 4 393.2263793945312 3 393.225158 1176.65364 NaN NaN NaN NaN NaN NaN NaN 78.338 1 72.162 71.662 72.662 -6.1757 0 0 0 0.94014 1 51272 51272 3.3196 0.68841 1 + 8598 19681 5887 6010 9947 9947 0.07238299351206479 EKCEFPKYG 9 Unmodified _EKCEFPKYG_ 0 0 0 REV__nc|ENSG00000198182|Q96SK3-2|ZNF607 REV__nc|ENSG00000198182|Q96SK3-2|ZNF607 MSMS AL20221201_MKP_PDAC_01 4 367.507080078125 3 367.507554 1099.50083 NaN NaN NaN NaN NaN NaN NaN 10.745 1 8.2628 7.7628 8.7628 -2.482 0 0 0 0.85798 1 5413 5413 0.23584 0.095952 1 + 8599 23999 5888 6011 9948 9948 -0.04493896045414658 EKCEFPKYG 9 Unmodified _EKCEFPKYG_ 0 0 0 REV__nc|ENSG00000198182|Q96SK3-2|ZNF607 REV__nc|ENSG00000198182|Q96SK3-2|ZNF607 MSMS AL20221201_MKP_PDAC_01 4 367.5073547363281 3 367.507554 1099.50083 NaN NaN NaN NaN NaN NaN NaN 11.013 1 8.5314 8.0314 9.0314 -2.482 0 0 0 0.85798 1 5544 5544 0.23584 0.095952 1 + 8600 23999 5888 6011 9949 9949 -0.04493896045414658 EKDADPQMNPN 11 Unmodified _EKDADPQMNPN_ 0 0 0 nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3;ENST00000481285.5_1_X:118146936-118151650:+|nuORF nc|ENSG00000175556|Q496Y0-2|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.7711181640625 2 629.772059 1257.52957 NaN NaN NaN NaN NaN NaN NaN 50.806 1 50.806 50.306 51.306 0 0 0 0 0.63856 1 28025 28025 19.362 1.2156 1 8601 8527 5889 6012 9950 9950 -0.08889823206914116 EKDMWLMRSFS 11 Unmodified _EKDMWLMRSFS_ 0 0 0 REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 715.3352661132812 2 715.333772 1428.65299 0.48295 0.00034547 0.29414 0.00021041 0.77709 0.00055588 715.3339736564737 51.411 0.24594 51.411 51.254 51.5 0 28 10 3 0 0 0 0.58219 1 28383 28383 12.241 0 1 4267700 + 8602 21376 5890 6013 9951 9951 -0.04418863360160685 EKDMWLMRSFS 11 Unmodified _EKDMWLMRSFS_ 0 0 0 REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 715.333772 1428.65299 0.48295 0.00034547 0.29414 0.00021041 0.77709 0.00055588 715.3339736564737 51.411 0.24594 51.411 51.254 51.5 0 -0.12212 0.00029558 NaN 12.241 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4267700 + 8603 21376 5890 6013 -0.04418863360160685 EKDMWLMRSFS 11 Unmodified _EKDMWLMRSFS_ 0 0 0 REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 715.333772 1428.65299 0.3474 0.00024851 -0.14274 -0.00010211 0.20466 0.0001464 715.3337500812805 52.089 0.29688 51.655 51.512 51.809 -0.43367 0.12212 -0.00032945 NaN 12.241 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5079400 + 8604 21376 5890 6013 -0.04418863360160685 EKDSVGLQ 8 Unmodified _EKDSVGLQ_ 0 0 0 REV__ENSG00000082438|ENST00000652658|COBLL1 REV__ENSG00000082438|ENST00000652658|COBLL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2281188964844 2 438.227082 874.439611 NaN NaN NaN NaN NaN NaN NaN 19.347 1 19.37 18.87 19.87 0.023106 0 0 0 0.97444 1 9749 9749 4.756 0.42677 1 + 8605 17706 5891 6014 9952 9952 -0.0026308475319183344 EKDTLRFDNPY 11 Unmodified _EKDTLRFDNPY_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.33935546875 2 699.338424 1396.66229 0.37714 0.00026375 0.78076 0.00054601 1.1579 0.00080976 699.33884417947 53.567 0.28019 53.115 52.943 53.223 -0.45173 42 13 4 0 0 0 0.66968 1 29047 29047 7.1017 2.2047 1 11410000 + 8606 24231 5892 6015 9953 9953 -0.02017055478609109 EKDTLRFDNPY 11 Unmodified _EKDTLRFDNPY_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 699.338424 1396.66229 0.23837 0.0001667 1.185 0.00082874 1.4234 0.00099544 699.3395493249448 53.189 0.2172 53.126 53.024 53.241 -0.063423 0.0054875 0.00050083 NaN 7.1017 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1954100 + 8607 24231 5892 6015 -0.02017055478609109 EKEASYDETY 10 Unmodified _EKEASYDETY_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.1753540039062 3 412.175186 1233.50373 -0.55214 -0.00022758 0.87675 0.00036137 0.32461 0.0001338 412.1755637912586 25.905 0.12576 25.905 25.84 25.965 0 9 5 2 0 0 0 0.71123 1 13306 13306 0.69767 0.24315 1 547760 8608 6655 5893 6016 9954 9954 -0.1036839417754436 EKEEDDKYWSL 11 Unmodified _EKEEDDKYWSL_ 0 0 0 REV__nc|ENSG00000106976|Q05193-5|DNM1 REV__nc|ENSG00000106976|Q05193-5|DNM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.827880859375 2 721.327721 1440.64089 0.28376 0.00020469 -1.5426 -0.0011127 -1.2588 -0.00090803 721.3268736892312 53.64 0.2641 53.64 53.506 53.77 0 30 12 3 0 0 0 0.46131 1 29716 29716 18.373 1.2602 1 5523200 + 8609 18543 5894 6017 9955 9955 -0.061804852979776115 EKEEDMIHFW 10 Unmodified _EKEEDMIHFW_ 0 0 0 ENST00000371482.5_2_9:140343848-140347544:-|nuORF;nc|ENSG00000165802|Q6X4W1-4|NSMF;nc|ENSG00000165802|Q6X4W1-6|NSMF;nc|ENSG00000165802|Q6X4W1-3|NSMF;nc|ENSG00000165802|Q6X4W1-2|NSMF;ENSG00000165802|ENST00000371475|NSMF ENST00000371482.5_2_9:140343848-140347544:-|nuORF ENST00000371482.5_2_9:140343848-140347544:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.3037109375 2 682.302995 1362.59144 0.11762 8.0255E-05 1.7871 0.0012193 1.9047 0.0012996 682.3041655647359 35.515 0.22606 35.54 35.456 35.682 0.024971 14 10 2 0 0 0 0.67033 1 18804 18804 6.2058 0.9089 1 1386200 8610 7389 5895 6018 9956 9956 -0.07535471787787174 EKEEEEKQRDM 11 Unmodified _EKEEEEKQRDM_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-8|RIMS1 REV__nc|ENSG00000079841|Q86UR5-8|RIMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 725.8280639648438 2 725.827563 1449.64057 0.11491 8.3405E-05 -0.008654 -6.2813E-06 0.10626 7.7124E-05 725.8274535663131 59.245 0.49834 59.245 58.924 59.423 0 69 21 5 0 0 0 0.61059 1 32983 32983 10.8 0 1 30746000 + 8611 17656 5896 6019 9957 9957 -0.06626228289519531 EKEEEMNREKE 11 Unmodified _EKEEEMNREKE_ 0 0 0 ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 ENST00000511906.5_1_5:37379391-37721408:+|nuORF ENST00000511906.5_1_5:37379391-37721408:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 726.330078125 2 725.827563 1449.64057 0.11491 8.3405E-05 -0.008654 -6.2813E-06 0.10626 7.7124E-05 725.8274535663131 59.245 0.49834 59.245 58.924 59.423 0 69 21 5 0 0 0 0.7187 1 32884 32884 2.4985 0 1 30746000 8612 1337 5897 6020 9958 9958 -0.06626228289542269 EKEELGFFQYY 11 Unmodified _EKEELGFFQYY_ 0 0 0 nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;ENST00000446144.2_1_15:20773467-20778061:+|nuORF;nc|ENSG00000181984|A6NN73|GOLGA8CP nc|ENSG00000290359|Q0D2H9|GOLGA8DP nc|ENSG00000290359|Q0D2H9|GOLGA8DP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 726.8361206054688 2 726.837725 1451.6609 -0.24413 -0.00017744 -0.11972 -8.7018E-05 -0.36385 -0.00026446 727.3395961922301 52.248 0.2039 52.248 52.129 52.332 0 12 8 2 0 0 0 0.7187 1 28950 28950 2.4985 0 1 1555900 8613 6270 5898 6021 9959 9959 -0.04686689567370195 EKEFEKFKF 9 Unmodified _EKEFEKFKF_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5772399902344 3 411.216768 1230.62847 -0.43808 -0.00018015 -0.11231 -4.6182E-05 -0.55038 -0.00022633 411.2161413407786 31.672 0.12677 31.702 31.648 31.775 0.030106 8 5 2 0 0 0 0.21822 1 16611 16611 2.4985 0.41248 1 546660 8614 9567 5899 6022 9960 9960 0.022385678202681447 EKEIEEEELL 10 Unmodified _EKEIEEEELL_ 0 0 0 REV__ENST00000605039.5_1_12:51675285-51695971:-|nuORF REV__ENST00000605039.5_1_12:51675285-51695971:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8124389648438 2 630.813916 1259.61328 0.31654 0.00019968 -2.0872 -0.0013167 -1.7707 -0.001117 630.8126256231361 72.121 0.32944 71.645 71.525 71.854 -0.47609 23 14 2 0 0 0 0.63399 1 39472 39472 9.3831 1.2276 1 877500 + 8615 18730 5900 6023 9961 9961 -0.006143885582105213 EKELCVKYF 9 Unmodified _EKELCVKYF_ 0 0 0 nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000166167|Q9Y297-2|BTRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.8719482421875 3 386.86697 1157.57908 0.62823 0.00024304 0.2025 7.8342E-05 0.83073 0.00032138 386.8677203961645 46.772 0.21454 46.435 46.347 46.562 -0.33664 19 10 3 0 0 0 0.55144 1 25045 25045 2.4985 0 1 5785800 8616 7444 5901 6024 9962 9962 0.006595365398197828 EKELLKVMK 9 Unmodified _EKELLKVMK_ 0 0 0 ENSG00000166069|ENST00000319669|TMCO5A;nc|ENSG00000166069|Q8N6Q1-2|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.7291870117188 3 373.226499 1116.65767 1.5319 0.00057173 3.0409 0.0011349 4.5727 0.0017067 373.5608991109586 34.942 0.39098 30.847 30.65 31.041 -4.0951 67 22 4 0 0 0 0.1986 1 20211 20211 9.544 1.3884 1 16501000 8617 7430 5902 6025 9963 9963 0.1040038884493697 EKEMEADERD 10 Unmodified _EKEMEADERD_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.26171875 2 626.261524 1250.5085 0.4399 0.00027549 0.30027 0.00018805 0.74018 0.00046354 626.2617371233349 66.828 0.42188 66.828 66.594 67.016 0 61 19 4 0 0 0 0.46077 1 37287 37287 18.373 2.224 1 15078000 8618 3461 5903 6026 9964 9964 -0.10673833306464076 EKEMEADERD 10 Unmodified _EKEMEADERD_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2613525390625 2 626.261524 1250.5085 0.40846 0.0002558 -0.29886 -0.00018716 0.10961 6.8643E-05 626.2613365430645 67.495 0.40382 67.495 67.271 67.675 0 59 18 4 0 0 0 0.36296 1 37649 37649 23.79 0 1 17985000 8619 3461 5903 6026 9965 9965 -0.10673833306464076 EKEMEADERD 10 Unmodified _EKEMEADERD_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.2636108398438 2 626.261524 1250.5085 0.33685 0.00021096 1.2166 0.0007619 1.5534 0.00097286 626.2623012635762 67.414 0.44664 66.932 66.695 67.142 -0.48219 66 19 5 0 0 0 0.46077 1 36756 36756 18.373 6.8784 1 19977000 8620 3461 5903 6026 9966 9966 -0.10673833306464076 EKEMEADERD 10 Unmodified _EKEMEADERD_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.2611083984375 2 626.261524 1250.5085 0.47557 0.00029783 -1.1029 -0.0006907 -0.62733 -0.00039287 626.2608025580049 68.12 0.48796 67.637 67.411 67.899 -0.48218 68 22 4 0 0 0 0.46077 2 37246 37137;37246 18.373 6.5031 1 36398000 8621 3461 5903 6026 9967;9968 9968 -0.10673833306464076 EKEMNKWREMS 11 Unmodified _EKEMNKWREMS_ 0 0 0 REV__ENSG00000108055|ENST00000361804|SMC3 REV__ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.8967590332031 3 489.895483 1466.66462 0.17557 8.6011E-05 1.839 0.00090094 2.0146 0.00098695 489.8963417084878 38.357 0.45663 38.07 37.847 38.303 -0.28687 62 20 4 0 0 0 0.68282 1 20220 20220 5.8681 1.7515 1 17363000 + 8622 18593 5904 6027 9969 9969 -0.050046663368220834 EKEMNKWREMS 11 Unmodified _EKEMNKWREMS_ 0 0 0 REV__ENSG00000108055|ENST00000361804|SMC3 REV__ENSG00000108055|ENST00000361804|SMC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 489.895483 1466.66462 0.16082 7.8785E-05 2.7857 0.0013647 2.9465 0.0014435 489.89684911790874 37.88 0.44453 37.88 37.625 38.069 0 -0.094932 0.00028732 NaN 5.8681 83 21 5 NaN NaN NaN NaN 0 NaN NaN 0 45112000 + 8623 18593 5904 6027 -0.050046663368220834 EKEMYESFYFL 11 Unmodified _EKEMYESFYFL_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.3311767578125 2 743.333961 1484.65337 NaN NaN NaN NaN NaN NaN NaN 45.953 1 45.629 45.129 46.129 -0.32425 0 0 0 0.90364 1 24576 24576 7.1017 0 1 + 8624 18621 5905 6028 9970 9970 -0.06957165159292344 EKEPEDDSQLW 11 Unmodified _EKEPEDDSQLW_ 0 0 0 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.3035888671875 2 688.304246 1374.59394 -0.59094 -0.00040675 0.42466 0.0002923 -0.16628 -0.00011445 688.3045429604107 35.094 0.32703 35.094 34.9 35.227 0 39 16 3 0 0 0 0.39848 1 18509 18509 21.59 0.053175 1 6186200 + 8625 19379 5906 6029 9971 9971 -0.07837344849144756 EKEPEDDSQLW 11 Unmodified _EKEPEDDSQLW_ 0 0 0 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 688.3046875 2 688.304246 1374.59394 -0.41839 -0.00028798 0.59165 0.00040723 0.17326 0.00011925 688.3046654252098 35.278 0.41512 35.056 34.83 35.245 -0.2224 63 18 4 0 0 0 0.33612 2 18492 18390;18492 24.882 7.4389 1 18464000 + 8626 19379 5906 6029 9972;9973 9973 -0.07837344849144756 EKEPPLWYAEF 11 Unmodified _EKEPPLWYAEF_ 0 0 0 ENSG00000153165|ENST00000409886|RGPD3 ENSG00000153165|ENST00000409886|RGPD3 ENSG00000153165|ENST00000409886|RGPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 704.8419189453125 2 704.84281 1407.67107 0.88733 0.00062543 -3.2365 -0.0022812 -2.3492 -0.0016558 704.840635225197 58.096 0.20006 58.029 57.93 58.13 -0.066036 13 9 2 0 0 0 0.61059 1 31639 31639 10.8 1.4164 1 2614400 8627 6244 5907 6030 9974 9974 -0.016460818421592194 EKEQKEKDK 9 Unmodified _EKEQKEKDK_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2262573242188 3 387.875182 1160.60372 -0.19722 -7.6496E-05 -0.33501 -0.00012994 -0.53223 -0.00020644 388.2104832549465 32.499 0.12207 32.529 32.44 32.562 0.029743 7 4 2 0 0 0 0.21254 1 17068 17068 6.6304 1.3335 1 713580 8628 654 5908 6031 9975 9975 0.029838879469025414 EKEQYDIFVTH 11 Unmodified _EKEQYDIFVTH_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.8416137695312 2 704.840799 1407.66705 0.16422 0.00011575 0.19232 0.00013555 0.35654 0.0002513 704.8409070314922 58.494 0.29068 58.003 57.883 58.173 -0.49079 35 13 4 0 0 0 0.70705 1 31783 31783 7.1017 7.1017 1 5549100 + 8629 20268 5909 6032 9976 9976 -0.02048171335900406 EKERDPHSWFH 11 Unmodified _EKERDPHSWFH_ 0 0 0 REV__ENSG00000130528|ENST00000252825|HRC REV__ENSG00000130528|ENST00000252825|HRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.8965148925781 3 489.89698 1466.66911 0.16082 7.8785E-05 -0.27061 -0.00013257 -0.10979 -5.3785E-05 489.89684911790874 37.88 0.44453 37.88 37.625 38.069 0 83 21 5 0 0 0 0.69316 1 20124 20124 2.2527 0 1 45112000 + 8630 19725 5910 6033 9977 9977 -0.045556978073818755 EKERDPHSWFH 11 Unmodified _EKERDPHSWFH_ 0 0 0 REV__ENSG00000130528|ENST00000252825|HRC REV__ENSG00000130528|ENST00000252825|HRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.34130859375 2 734.341832 1466.66911 -0.046893 -3.4435E-05 -0.11897 -8.7365E-05 -0.16586 -0.0001218 734.3416549399504 37.866 0.34848 37.866 37.68 38.028 0 37 16 3 0 0 0 0.5229 1 20174 20174 15.248 0 1 3855700 + 8631 19725 5910 6033 9978 9978 -0.045556978073818755 EKERDPHSWFH 11 Unmodified _EKERDPHSWFH_ 0 0 0 REV__ENSG00000130528|ENST00000252825|HRC REV__ENSG00000130528|ENST00000252825|HRC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 734.341832 1466.66911 -0.16773 -0.00012317 1.0862 0.00079762 0.91843 0.00067444 734.3425160978212 38.372 0.18127 38.085 37.953 38.134 -0.28687 0.10947 0.0016676 NaN 15.248 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 959260 + 8632 19725 5910 6033 -0.045556978073818755 EKESIWQE 8 Unmodified _EKESIWQE_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1707763671875 3 350.169706 1047.48729 1.8994 0.00066511 1.5256 0.00053421 3.425 0.0011993 350.17034401793785 53.649 0.46806 47.845 47.659 48.127 -5.8042 42 29 2 0 0 0 0.78849 1 33862 33862 6.7232 0 1 20508000 + 8633 17465 5911 6034 9979 9979 -0.034554305529809426 EKESSDDDTPF 11 Unmodified _EKESSDDDTPF_ 0 0 0 nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000174485|Q7Z401|DENND4A MSMS AL20221201_MKP_PDAC_01 4 423.8445739746094 3 423.842095 1268.50446 NaN NaN NaN NaN NaN NaN NaN 100.4 1 94.222 93.722 94.722 -6.1757 0 0 0 0.92234 1 67122 67122 2.8433 0 1 8634 8426 5912 6035 9980 9980 -0.11905599528517996 EKETAVTAHF 10 Unmodified _EKETAVTAHF_ 0 0 0 REV__ENSG00000163568|ENST00000368130|AIM2 REV__ENSG00000163568|ENST00000368130|AIM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.2158813476562 3 378.192623 1131.55604 1.2211 0.00046183 0.93605 0.00035401 2.1572 0.00081583 378.19273223742766 18.513 0.33929 15.892 15.69 16.03 -2.6215 68 33 3 0 0 0 0.23609 1 9722 9722 8.4443 4.2548 1 6411400 + 8635 21787 5913 6036 9981 9981 -0.004477662532735849 EKEWHFFCFRF 11 Unmodified _EKEWHFFCFRF_ 0 0 0 ENST00000268607.9_1_16:87437433-87437484:+|nuORF ENST00000268607.9_1_16:87437433-87437484:+|nuORF ENST00000268607.9_1_16:87437433-87437484:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 788.3636474609375 2 788.363721 1574.71289 NaN NaN NaN NaN NaN NaN NaN 29.054 1 29.084 28.584 29.584 0.030106 0 0 0 0.9435 1 15146 15146 0 0 1 8636 11357 5914 6037 9982 9982 -0.05147804634634667 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 740.8330078125 2 740.833171 1479.65179 -0.28832 -0.0002136 -0.043068 -3.1906E-05 -0.33139 -0.00024551 740.8327606634424 60.553 0.38205 60.064 59.887 60.269 -0.48932 44 18 3 0 0 0 0.70705 2 33069 32968;33069 6.1918 3.1966 1 6594100 8637 9872 5915 6038 9983;9984 9984 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 740.8328247070312 2 740.833171 1479.65179 0.51842 0.00038406 0.1011 7.4896E-05 0.61952 0.00045896 740.8330956584404 62.199 0.32391 61.711 61.57 61.894 -0.48764 34 14 3 0 0 0 0.68995 2 33861 33861;33962 9.544 6.2627 1 6097100 8638 9872 5915 6038 9985;9986 9985 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 740.833251953125 2 740.833171 1479.65179 0.010506 7.7828E-06 0.24191 0.00017922 0.25242 0.000187 740.8333519263041 68.943 0.3873 68.463 68.264 68.652 -0.48071 58 16 4 0 0 0 0.71193 1 37732 37732 6.1918 3.1966 1 13952000 8639 9872 5915 6038 9987 9987 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 740.833171 1479.65179 0.30868 0.00022868 -0.38186 -0.0002829 -0.073181 -5.4215E-05 740.8327398464255 59.867 0.27251 59.867 59.796 60.068 0 -0.098049 -0.00033036 NaN 4.1895 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1716900 8640 9872 5915 6038 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 740.833171 1479.65179 -0.021555 -1.5968E-05 0.075542 5.5964E-05 0.053987 3.9995E-05 741.3349509623856 61.611 0.29646 61.611 61.455 61.751 0 -0.050069 -2.3833E-05 NaN 9.544 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1542700 8641 9872 5915 6038 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 740.833171 1479.65179 -0.28832 -0.0002136 -0.043068 -3.1906E-05 -0.33139 -0.00024551 740.8327606634424 60.553 0.38205 60.064 59.887 60.269 -0.48932 0.098049 0.00017162 NaN 4.1895 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6594100 8642 9872 5915 6038 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 740.833171 1479.65179 0.51842 0.00038406 0.1011 7.4896E-05 0.61952 0.00045896 740.8330956584404 62.199 0.32391 61.711 61.57 61.894 -0.48764 0.050069 1.4032E-05 NaN 9.544 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 6097100 8643 9872 5915 6038 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 740.833171 1479.65179 0.010506 7.7828E-06 0.24191 0.00017922 0.25242 0.000187 740.8333519263041 68.943 0.3873 68.463 68.264 68.652 -0.48071 0.067811 -0.0007302 NaN 6.1918 58 16 4 NaN NaN NaN NaN 0 NaN NaN 0 13952000 8644 9872 5915 6038 -0.06885082923713526 EKEYEYSFRTE 11 Unmodified _EKEYEYSFRTE_ 0 0 0 ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B ENSG00000196814|ENST00000361171|MVB12B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 740.833171 1479.65179 0.69189 0.00051258 1.4335 0.001062 2.1254 0.0015746 741.3363461757604 68.442 0.20438 68.467 68.378 68.582 0.025154 0.07239 0.0010354 NaN 6.1918 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1027700 8645 9872 5915 6038 -0.06885082923713526 EKEYFYIYRNL 11 Unmodified _EKEYFYIYRNL_ 0 0 0 REV__ENSG00000069329|ENST00000299138|VPS35 REV__ENSG00000069329|ENST00000299138|VPS35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 769.3886108398438 2 769.387916 1536.76128 NaN NaN NaN NaN NaN NaN NaN 69.564 1 69.595 69.095 70.095 0.030914 0 0 0 0.94002 1 38244 38244 2.4985 1.169 1 + 8646 17449 5916 6039 9988 9988 0.014369674862791726 EKFQGAWWY 9 Unmodified _EKFQGAWWY_ 0 0 0 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 ENSG00000085265|ENST00000371806|FCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5257568359375 3 405.525825 1213.55564 0.61326 0.00024869 -0.89677 -0.00036367 -0.28351 -0.00011497 405.52557074802337 17.674 0.57936 15.087 14.913 15.492 -2.5866 234 70 5 0 0 0 0.46501 1 9402 9402 6.1918 0 1 178710000 8647 1404 5917 6040 9989 9989 -0.04259141182478743 EKFSKHYNI 9 Unmodified _EKFSKHYNI_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF;nc|ENSG00000186976|Q5THR3-2|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.205322265625 3 389.204862 1164.59276 1.3975 0.00054393 -0.038372 -1.4935E-05 1.3592 0.00052899 389.20490537344995 32.365 0.45649 28.509 28.319 28.776 -3.8562 43 25 2 0 0 0 0.40476 1 18517 18517 12.241 2.0901 1 17773000 8648 9528 5918 6041 9990 9990 0.01704530363304002 EKFWPNKLEE 10 Unmodified _EKFWPNKLEE_ 0 0 0 nc|ENSG00000057149|P29508-2|SERPINB3 nc|ENSG00000057149|P29508-2|SERPINB3 nc|ENSG00000057149|P29508-2|SERPINB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.837158203125 2 660.335153 1318.65575 -0.6641 -0.00043853 0.34097 0.00022516 -0.32313 -0.00021338 660.3354079240954 77.524 0.70595 77.042 76.647 77.353 -0.4826 69 32 3 0 0 0 0.71276 1 42290 42290 1.4819 0.15237 1 2277900 8649 16034 5919 6042 9991 9991 0.009170513606704844 EKGEIQNIL 9 Unmodified _EKGEIQNIL_ 0 0 0 ENSG00000164344|ENST00000264690|KLKB1 ENSG00000164344|ENST00000264690|KLKB1 ENSG00000164344|ENST00000264690|KLKB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2898559570312 2 522.290214 1042.56587 1.3226 0.0006908 -0.76065 -0.00039728 0.56198 0.00029352 522.289802397512 53.936 0.66692 48.071 47.77 48.437 -5.8653 125 39 4 0 0 0 0.16226 1 34010 34010 26.884 1.4843 1 230310000 8650 7185 5920 6043 9992 9992 0.04629421752088092 EKGGVEVL 8 Unmodified _EKGGVEVL_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.7349548339844 2 415.734543 829.454533 1.0217 0.00042474 0.28278 0.00011756 1.3044 0.0005423 415.73455810612916 63.159 0.63919 56.983 56.653 57.292 -6.1757 81 34 3 0 0 0 0.28079 1 40825 40825 57.471 3.8958 1 160080000 8651 4026 5921 6044 9993 9993 0.03298407114800739 EKGIFWVEWP 10 Unmodified _EKGIFWVEWP_ 0 0 0 REV__ENSG00000109881|ENST00000328697|CCDC34 REV__ENSG00000109881|ENST00000328697|CCDC34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8882141113281 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 103.48 1 103.48 102.98 103.98 0 0 0 0 1.0024 1 57042 57042 0.13989 0.056541 1 + 8652 18676 5922 6045 9994 9994 0.011222740571838585 EKGSLSAMRF 10 Unmodified _EKGSLSAMRF_ 0 0 0 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2904052734375 2 563.289691 1124.56483 1.7866 0.0010064 -0.53078 -0.00029898 1.2558 0.0007074 563.7897283936343 100.92 0.14452 94.745 94.67 94.815 -6.1757 20 8 3 0 0 0 0.54684 1 67604 67604 13.906 0.39817 1 39083000 8653 9957 5923 6046 9995 9995 0.007528841115345131 EKGSTQAEQQF 11 Unmodified _EKGSTQAEQQF_ 0 0 0 REV__nc|ENSG00000133063|Q13231-2|CHIT1 REV__nc|ENSG00000133063|Q13231-2|CHIT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.8277587890625 2 626.793849 1251.57314 0.22842 0.00014317 -1.0794 -0.00067657 -0.851 -0.0005334 626.7924287521955 98.743 0.22768 98.743 98.612 98.84 0 14 7 3 0 0 0 0.29134 1 54548 54548 12.241 4.0851 1 693620 + 8654 19904 5924 6047 9996 9996 -0.04257890438157119 EKGYRPAANWI 11 Unmodified _EKGYRPAANWI_ 0 0 0 ENST00000423427.1_2_3:173114403-173322094:+|nuORF ENST00000423427.1_2_3:173114403-173322094:+|nuORF ENST00000423427.1_2_3:173114403-173322094:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5635375976562 3 435.56305 1303.66732 0.66274 0.00028867 1.0372 0.00045176 1.6999 0.00074043 435.89778051648153 40.447 0.22314 35.918 35.84 36.064 -4.5294 31 13 3 0 0 0 0.64473 1 24136 24136 9.0676 2.0334 1 8815500 8655 13132 5925 6048 9997 9997 0.027632931746666145 EKILDSTF 8 Unmodified _EKILDSTF_ 0 0 0 ENST00000238112.7_1_2:9613154-9613199:+|nuORF ENST00000238112.7_1_2:9613154-9613199:+|nuORF ENST00000238112.7_1_2:9613154-9613199:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2218017578125 2 476.752933 951.491313 0.19201 9.1541E-05 -0.6845 -0.00032634 -0.49249 -0.00023479 476.7526621572281 64.738 0.28083 64.738 64.573 64.853 0 20 13 2 0 0 0 8.7369 1 36110 36110 4.756 0.42677 1 1025400 8656 11095 5926 6049 9998 9998 0.013626589407067513 EKIQLEVRP 9 Unmodified _EKIQLEVRP_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2280578613281 3 371.220513 1110.63971 0.11562 4.292E-05 -0.53672 -0.00019924 -0.4211 -0.00015632 371.2199890967304 37.216 0.29793 37.216 37.018 37.316 0 33 14 3 0 0 0 0.21874 1 19668 19668 1.1933 0 1 6239700 + 8657 21279 5927 6050 9999 9999 0.08881389914427018 EKIWLRLR 8 Unmodified _EKIWLRLR_ 0 0 0 nc|ENSG00000154678|Q14123-2|PDE1C;ENSG00000154678|ENST00000396191|PDE1C nc|ENSG00000154678|Q14123-2|PDE1C nc|ENSG00000154678|Q14123-2|PDE1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3472900390625 2 557.3482 1112.68185 NaN NaN NaN NaN NaN NaN NaN 104.59 1 104.54 104.04 105.04 -0.048737 0 0 0 0.97444 1 58071 58071 0.69038 0 1 8658 6343 5928 6051 10000 10000 0.1300141011345204 EKIYPIHQF 9 Unmodified _EKIYPIHQF_ 0 0 0 REV__ENST00000467924.1_1_1:220313569-220316509:+|nuORF REV__ENST00000467924.1_1_1:220313569-220316509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.215087890625 3 392.213358 1173.61824 0.21547 8.4509E-05 0.40298 0.00015806 0.61845 0.00024257 392.2135116795319 39.76 0.39283 39.765 39.543 39.936 0.0050545 45 18 3 0 0 0 0.58865 1 21120 21120 1.0715 0 1 2292100 + 8659 17423 5929 6052 10001 10001 0.038380048857106885 EKKKKKKKKVI 11 Unmodified _EKKKKKKKKVI_ 0 0 0 REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF REV__ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.9871215820312 2 692.989946 1383.96534 NaN NaN NaN NaN NaN NaN NaN 83.302 1 83.302 82.802 83.802 0 0 0 0 0.9435 1 46201 46201 0 0 1 + 8660 26416 5930 6053 10002 10002 0.2887157643824594 EKKNFPFERLY 11 Unmodified _EKKNFPFERLY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9316101074219 3 490.92951 1469.7667 0.88557 0.00043475 0.59639 0.00029279 1.482 0.00072754 491.2642868033773 81.726 0.73831 75.551 75.247 75.986 -6.1757 142 41 4 0 0 0 0.67477 1 53523 53523 6.6235 1.425 1 65807000 8661 5575 5931 6054 10003 10003 0.05060691068752021 EKKNFPFERLY 11 Unmodified _EKKNFPFERLY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 736.392578125 2 735.890626 1469.7667 0.83736 0.00061621 -0.44175 -0.00032508 0.39561 0.00029113 736.3916632221232 81.865 0.48711 75.69 75.343 75.83 -6.1757 41 27 2 0 0 0 0.53099 2 53601 53601;53749 23.79 9.3844 1 12523000 8662 5575 5931 6054 10004;10005 10004 0.05060691068752021 EKKRYLWFYRF 11 Unmodified _EKKRYLWFYRF_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4408569335938 2 818.44336 1634.87217 NaN NaN NaN NaN NaN NaN NaN 47.443 1 47.443 46.943 47.943 0 0 0 0 0.94216 1 25972 25972 0.96228 0.96228 1 8663 5127 5932 6055 10006 10006 0.08012651985018238 EKKTKKNKKKK 11 Unmodified _EKKTKKNKKKK_ 0 0 0 REV__ENSG00000189134|ENST00000343684|NKAPL REV__ENSG00000189134|ENST00000343684|NKAPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.4600830078125 2 694.45901 1386.90347 NaN NaN NaN NaN NaN NaN NaN 86.556 1 86.556 86.056 87.056 0 0 0 0 0.9435 1 47942 47942 0 0 1 + 8664 23765 5933 6056 10007 10007 0.22549225019088226 EKLFHQNMD 9 Unmodified _EKLFHQNMD_ 0 0 0 REV__ENST00000484461.1_1_1:47150073-47162261:-|nuORF REV__ENST00000484461.1_1_1:47150073-47162261:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8493041992188 3 387.850091 1160.52844 NaN NaN NaN NaN NaN NaN NaN 88.819 1 88.819 88.319 89.319 0 0 0 0 0.85852 1 49155 49155 0.20686 0 1 + 8665 21494 5934 6057 10008 10008 -0.04539992785180402 EKLFHQNMD 9 Unmodified _EKLFHQNMD_ 0 0 0 REV__ENST00000484461.1_1_1:47150073-47162261:-|nuORF REV__ENST00000484461.1_1_1:47150073-47162261:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8493957519531 3 387.850091 1160.52844 NaN NaN NaN NaN NaN NaN NaN 89.333 1 88.832 88.332 89.332 -0.50171 0 0 0 0.85852 1 48844 48844 0.20686 0.066965 1 + 8666 21494 5934 6057 10009 10009 -0.04539992785180402 EKLHRLRIL 9 Unmodified _EKLHRLRIL_ 0 0 0 nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 MSMS AL20221201_MKP_PDAC_01 4 589.3793334960938 2 589.380032 1176.74551 NaN NaN NaN NaN NaN NaN NaN 104.17 1 97.99 97.49 98.49 -6.1757 0 0 0 0.84737 1 69778 69778 1.8442 0.19162 1 8667 6046 5935 6058 10010 10010 0.16420770550530506 EKLKNQILCLT 11 Unmodified _EKLKNQILCLT_ 0 0 0 REV__ENSG00000103351|ENST00000576634|CLUAP1 REV__ENSG00000103351|ENST00000576634|CLUAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8745727539062 2 651.87613 1301.73771 NaN NaN NaN NaN NaN NaN NaN 80.077 1 80.134 79.634 80.634 0.057587 0 0 0 0.66488 1 44253 44253 18.373 2.224 1 + 8668 18303 5936 6059 10011 10011 0.09890830448125598 EKLQMNGQTI 10 Unmodified _EKLQMNGQTI_ 0 0 0 REV__ENSG00000083099|ENST00000523377|LYRM2 REV__ENSG00000083099|ENST00000523377|LYRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3040161132812 2 581.300255 1160.58596 1.3816 0.00080314 -0.082544 -4.7983E-05 1.2991 0.00075516 581.3005692024099 64.213 0.35936 64.202 64.037 64.396 -0.010536 62 17 5 0 0 0 0.46514 1 35125 35125 18.146 1.2041 1 23404000 + 8669 17713 5937 6060 10012 10012 0.012088494204135714 EKLRKEEE 8 Unmodified _EKLRKEEE_ 0 0 0 REV__nc|ENSG00000101928|Q9UJG1-2|MOSPD1 REV__nc|ENSG00000101928|Q9UJG1-2|MOSPD1 MSMS AL20221201_MKP_PDAC_01 4 354.1921997070312 3 354.192623 1059.55604 NaN NaN NaN NaN NaN NaN NaN 16.905 1 14.348 13.848 14.848 -2.557 0 0 0 0.96881 1 8795 8795 6.7232 0 1 + 8670 18204 5938 6061 10013 10013 0.02864233746709033 EKLRLGRLP 9 Unmodified _EKLRLGRLP_ 0 0 0 REV__ENST00000479016.2_1_12:56618280-56618448:+|nuORF REV__ENST00000479016.2_1_12:56618280-56618448:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.2336730957031 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 16.781 1 14.224 13.724 14.724 -2.557 0 0 0 0.43047 1 8719 8719 18.373 3.1246 1 + 8671 27646 5939 6062 10014 10014 0.139651062508392 EKLSNNNESAA 11 Unmodified _EKLSNNNESAA_ 0 0 0 DNAL4|p.F46L|1|0.2|ENSG00000100246|chr22:38780941-38780941|G/T|missense_variant DNAL4|p.F46L|1|0.2|ENSG00000100246|chr22:38780941-38780941|G/T|missense_variant DNAL4|p.F46L|1|0.2|ENSG00000100246|chr22:38780941-38780941|G/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.5222473144531 3 392.854558 1175.54184 0.78605 0.0003088 3.6189 0.0014217 4.405 0.0017305 392.8566752467037 38.425 0.23225 34.056 33.932 34.164 -4.3689 18 14 2 0 0 0 0.30018 1 22661 22661 3.5927 0 1 6909800 8672 238 5940 6063 10015 10015 -0.03890463472225747 EKLWLIRY 8 Unmodified _EKLWLIRY_ 0 0 0 REV__ENST00000496055.5_1_1:76251925-76253282:+|nuORF REV__ENST00000496055.5_1_1:76251925-76253282:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.2386779785156 3 374.221965 1119.64407 1.1691 0.00043752 -1.3432 -0.00050267 -0.17409 -6.5149E-05 374.2211170578582 68.156 0.15625 61.981 61.89 62.046 -6.1757 13 8 2 0 0 0 8.7369 1 44462 44462 18.146 3.741 1 9490700 + 8673 27539 5941 6064 10016 10016 0.08902899127997443 EKMRHLLHVL 10 Unmodified _EKMRHLLHVL_ 0 0 0 nc|ENSG00000042317|Q9P0W8-3|SPATA7;ENST00000556666.5_1_14:88883017-88904763:+|nuORF;nc|ENSG00000042317|Q9P0W8-2|SPATA7;ENSG00000042317|ENST00000393545|SPATA7 nc|ENSG00000042317|Q9P0W8-3|SPATA7 nc|ENSG00000042317|Q9P0W8-3|SPATA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.9160461425781 3 425.916658 1274.72815 1.4252 0.000607 -0.24212 -0.00010312 1.183 0.00050388 426.2509135099911 97.974 0.34677 91.798 91.577 91.924 -6.1757 50 22 3 0 0 0 0.40046 1 65001 65001 21.59 3.727 1 22777000 8674 661 5942 6065 10017 10017 0.10177106953233306 EKMTSFDMP 9 Unmodified _EKMTSFDMP_ 0 0 0 REV__ENSG00000166164|ENST00000394688|BRD7 REV__ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.4922180175781 3 362.492916 1084.45692 0.2899 0.00010509 -1.784 -0.0006467 -1.4941 -0.00054161 362.4922593358286 68.713 0.21495 68.233 68.161 68.376 -0.48071 18 9 3 0 0 0 0.58865 1 37590 37590 1.0715 0 1 583690 + 8675 22089 5943 6066 10018 10018 -0.08193248534053055 EKMYQRVMEMT 11 Unmodified _EKMYQRVMEMT_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 723.3310546875 2 723.332915 1444.65128 0.45766 0.00033104 -2.1883 -0.0015829 -1.7306 -0.0012518 723.3311876630307 40.529 0.21046 40.226 40.108 40.318 -0.30304 19 9 3 0 0 0 0.70069 1 21431 21431 4.1895 0.90819 1 2167300 + 8676 20101 5944 6067 10019 10019 -0.05326240440422225 EKMYQRVMEMT 11 Unmodified _EKMYQRVMEMT_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 723.332915 1444.65128 -0.090773 -6.5659E-05 -0.98615 -0.00071331 -1.0769 -0.00077897 723.3324343933701 40.091 0.17741 40.091 39.993 40.17 0 -0.067365 0.00085442 NaN 4.1895 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1459100 + 8677 20101 5944 6067 -0.05326240440422225 EKMYQRVMEMT 11 Unmodified _EKMYQRVMEMT_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 723.332915 1444.65128 0.45766 0.00033104 -2.1883 -0.0015829 -1.7306 -0.0012518 723.3311876630307 40.529 0.21046 40.226 40.108 40.318 -0.30304 0.067365 -0.00088469 NaN 4.1895 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2167300 + 8678 20101 5944 6067 -0.05326240440422225 EKNKHLHIFF 10 Unmodified _EKNKHLHIFF_ 0 0 0 ENST00000544547.5_1_2:109302332-109302491:+|nuORF ENST00000544547.5_1_2:109302332-109302491:+|nuORF ENST00000544547.5_1_2:109302332-109302491:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2441101074219 3 438.24354 1311.70879 0.5353 0.00023459 0.29338 0.00012857 0.82868 0.00036317 438.24372804880005 53.035 0.27205 52.972 52.826 53.098 -0.063423 34 13 3 0 0 0 0.52097 1 28718 28718 9.7643 1.9182 1 7424400 8679 15081 5945 6068 10020 10020 0.06540473933955582 EKNLATHS 8 Unmodified _EKNLATHS_ 0 0 0 REV__nc|ENSG00000186431|P24071-7|FCAR REV__nc|ENSG00000186431|P24071-7|FCAR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2340087890625 2 450.232699 898.450845 NaN NaN NaN NaN NaN NaN NaN 88.259 1 88.259 87.759 88.759 0 0 0 0 0.97444 1 48856 48856 2.5775 0 1 + 8680 23573 5946 6069 10021 10021 -0.002442626590436703 EKPSEAKAMT 10 Unmodified _EKPSEAKAMT_ 0 0 0 REV__ENST00000592818.5_1_19:35629760-35632121:+|nuORF REV__ENST00000592818.5_1_19:35629760-35632121:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7662963867188 2 546.273706 1090.53286 0.97794 0.00053422 -0.82031 -0.00044811 0.15763 8.6108E-05 546.2732523814909 50.582 0.34348 45.043 44.854 45.198 -5.5391 29 21 2 0 0 0 0.21809 1 31627 31627 24.991 4.5373 1 85639000 + 8681 24610 5947 6070 10022 10022 -0.008785283622728457 EKPYRCPW 8 Unmodified _EKPYRCPW_ 0 0 0 ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2134704589844 3 360.176138 1077.50659 -0.038112 -1.3727E-05 -0.86097 -0.0003101 -0.89909 -0.00032383 360.1758623869372 39.046 0.27596 38.759 38.585 38.861 -0.28687 14 11 2 0 0 0 8.7369 1 20531 20531 3.5965 3.3275 1 2161000 8682 10530 5948 6071 10023 10023 -0.02906752743092511 EKQTSLFFF 9 Unmodified _EKQTSLFFF_ 0 0 0 REV__ENST00000377102.5_1_13:80913192-80913657:-|nuORF REV__ENST00000377102.5_1_13:80913192-80913657:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7954711914062 2 573.795132 1145.57571 NaN NaN NaN NaN NaN NaN NaN 60.984 1 60.984 60.484 61.484 0 0 0 0 0.82739 1 34010 34010 4.3292 1.8308 1 + 8683 26239 5949 6072 10024 10024 0.008746097574658052 EKRRKKKKGT 10 Unmodified _EKRRKKKKGT_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000471341.5_1_1:155785942-155827007:-|nuORF nc|ENSG00000116580|Q3T8J9-3|GON4L nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2743225097656 3 420.273722 1257.79934 1.5951 0.00067037 -0.40768 -0.00017134 1.1874 0.00049903 420.27351696079484 101.1 0.10672 94.924 94.85 94.956 -6.1757 12 5 3 0 0 0 0.72464 1 67783 67783 0.15932 0.01943 1 17596000 8684 3229 5950 6073 10025 10025 0.1807494298225265 EKRYMMVKAHS 11 Unmodified _EKRYMMVKAHS_ 0 0 0 REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF REV__ENST00000607532.5_1_6:13307806-13327130:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.3510131835938 2 690.349757 1378.68496 -0.034922 -2.4109E-05 0.79113 0.00054615 0.75621 0.00052205 690.3506890898731 38.151 0.19031 37.879 37.802 37.992 -0.27133 21 8 3 0 0 0 0.66968 1 20066 20066 7.1017 1.3699 1 2135700 + 8685 20802 5951 6074 10026 10026 0.01076549113645342 EKSENRASATL 11 Unmodified _EKSENRASATL_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3115234375 2 603.309666 1204.60478 NaN NaN NaN NaN NaN NaN NaN 24.991 1 24.991 24.491 25.491 0 0 0 0 0.85892 1 12795 12795 7.609 0 1 8686 10134 5952 6075 10027 10027 0.010661023158036187 EKSHLCDVNSF 11 Unmodified _EKSHLCDVNSF_ 0 0 0 nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENST00000543152.5_1_16:19590306-19619547:+|nuORF nc|ENSG00000103544|Q7Z3J2-2|VPS35L nc|ENSG00000103544|Q7Z3J2-2|VPS35L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.7927856445312 2 639.792795 1277.57104 -0.22138 -0.00014163 -0.19598 -0.00012538 -0.41735 -0.00026702 639.7925424376965 38.24 0.22403 37.968 37.862 38.086 -0.27133 22 9 3 0 0 0 0.33405 1 20126 20126 24.991 0 1 2403400 8687 16098 5953 6076 10028 10028 -0.05664642447595725 EKSHLCDVNSF 11 Unmodified _EKSHLCDVNSF_ 0 0 0 nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENST00000543152.5_1_16:19590306-19619547:+|nuORF nc|ENSG00000103544|Q7Z3J2-2|VPS35L nc|ENSG00000103544|Q7Z3J2-2|VPS35L MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.789306640625 2 639.792795 1277.57104 0.51103 0.00032695 -2.0548 -0.0013146 -1.5438 -0.0009877 639.7914221380342 43.505 0.38494 38.74 38.55 38.935 -4.7648 37 24 2 0 0 0 0.10451 1 26349 26349 41.956 15.687 1 19244000 8688 16098 5953 6076 10029 10029 -0.05664642447595725 EKSTYILKL 9 Unmodified _EKSTYILKL_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.5533447265625 3 365.55338 1093.63831 0.58082 0.00021232 0.16567 6.0561E-05 0.74648 0.00027288 365.55328715068157 40.509 0.2487 40.206 40.088 40.337 -0.30304 24 11 3 0 0 0 0.32871 1 21420 21420 10.8 0.64894 1 2526600 + 8689 21791 5954 6077 10030 10030 0.0952375582564855 EKSVGNYYRL 10 Unmodified _EKSVGNYYRL_ 0 0 0 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.82177734375 2 614.81967 1227.62479 0.5363 0.00032973 1.7118 0.0010524 2.2481 0.0013822 614.8211890855163 61.562 0.1934 61.529 61.415 61.608 -0.032787 17 9 2 0 0 0 0.42143 1 33612 33612 20.415 1.0526 1 3772100 8690 10767 5955 6078 10031 10031 0.02007898046417722 EKSVGNYYRL 10 Unmodified _EKSVGNYYRL_ 0 0 0 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6 nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 614.81967 1227.62479 0.42731 0.00026272 2.8342 0.0017425 3.2616 0.0020053 614.8220185208826 61.422 0.17915 61.422 61.297 61.476 0 -0.060667 0.00053118 NaN 20.415 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 688280 8691 10767 5955 6078 0.02007898046417722 EKTWELVL 8 Unmodified _EKTWELVL_ 0 0 0 TBC1D9|p.R509W|1|0.09|ENSG00000109436|chr4:140668980-140668980|G/A|missense_variant TBC1D9|p.R509W|1|0.09|ENSG00000109436|chr4:140668980-140668980|G/A|missense_variant TBC1D9|p.R509W|1|0.09|ENSG00000109436|chr4:140668980-140668980|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2843627929688 2 509.2844 1016.55425 NaN NaN NaN NaN NaN NaN NaN 80.814 1 80.814 80.314 81.314 0 0 0 0 0.94494 1 44867 44867 11.64 0.52583 1 8692 30183 5956 6079 10032 10032 0.04663224728756177 EKVELTPLK 9 Unmodified _EKVELTPLK_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8780517578125 3 352.881497 1055.62266 0.0051663 1.8231E-06 -0.3597 -0.00012693 -0.35453 -0.00012511 352.88233884645575 33.797 0.51285 33.826 33.672 34.185 0.028934 39 22 3 0 0 0 0.55775 1 17975 17975 2.2828 0 1 2969600 8693 6400 5957 6080 10033 10033 0.09707469308591499 EKWERLQY 8 Unmodified _EKWERLQY_ 0 0 0 REV__ENSG00000143850|ENST00000272203|PLEKHA6 REV__ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2965698242188 2 576.29583 1150.57711 0.98991 0.00057048 0.020584 1.1862E-05 1.0105 0.00058234 576.2958307539074 52.653 0.39243 46.918 46.707 47.099 -5.7345 37 21 2 0 0 0 0.38465 2 33165 33165;33276 46.021 13.715 1 87229000 + 8694 20675 5958 6081 10034;10035 10034 0.007842438462375867 EKWRQRIRKWR 11 Unmodified _EKWRQRIRKWR_ 0 0 0 REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.4816284179688 2 821.481674 1640.9488 NaN NaN NaN NaN NaN NaN NaN 86.286 1 86.348 85.848 86.848 0.061638 0 0 0 0.9435 1 47887 47887 0 0 1 + 8695 24614 5959 6082 10036 10036 0.1539588832483787 EKWSKILEL 9 Unmodified _EKWSKILEL_ 0 0 0 ENSG00000132300|ENST00000254630|PTCD3;ENST00000484203.5_1_2:86348636-86354493:+|nuORF ENSG00000132300|ENST00000254630|PTCD3 ENSG00000132300|ENST00000254630|PTCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3312377929688 2 573.331882 1144.64921 0.31289 0.00017939 -0.77466 -0.00044413 -0.46177 -0.00026474 573.3313519930701 78.175 0.35687 78.227 78.037 78.394 0.052452 31 14 3 0 0 0 0.37578 1 43156 43156 19.257 0 1 4150600 8696 4386 5960 6083 10037 10037 0.08267158199964797 EKYYHEWLNRY 11 Unmodified _EKYYHEWLNRY_ 0 0 0 REV__ENSG00000113966|ENST00000463745|ARL6 REV__ENSG00000113966|ENST00000463745|ARL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 801.385009765625 2 800.88079 1599.74703 -0.028047 -2.2462E-05 2.5971 0.0020799 2.569 0.0020575 800.8827567142571 98.929 0.18224 98.736 98.63 98.812 -0.19321 15 5 4 0 0 0 0.74096 1 54020 54020 1.1933 0.88631 1 3868400 + 8697 18898 5961 6084 10038 10038 -0.02885684941998079 ELAAQLALS 9 Unmodified _ELAAQLALS_ 0 0 0 ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 915.5158081054688 1 915.514573 914.507297 0.067379 6.1686E-05 1.5681 0.0014357 1.6355 0.0014973 915.5162782937134 63.698 0.25823 63.698 63.543 63.801 0 17 10 2 0 0 0 0.5029 1 35579 35579 7.2892 0 1 983240 8698 7079 5962 6085 10039 10039 0.04662365177614447 ELACALCL 8 Unmodified _ELACALCL_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2067565917969 2 418.20625 834.397946 NaN NaN NaN NaN NaN NaN NaN 20.995 1 20.995 20.495 21.495 0 0 0 0 0.97444 1 10595 10595 2.5775 0 1 + 8699 22177 5963 6086 10040 10040 -0.02587680037743212 ELAHQLCNY 9 Unmodified _ELAHQLCNY_ 0 0 0 REV__nc|ENSG00000162623|Q6IPR3-2|TYW3 REV__nc|ENSG00000162623|Q6IPR3-2|TYW3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3021240234375 2 545.752941 1089.49133 0.073568 4.015E-05 1.2119 0.00066139 1.2855 0.00070154 545.7535581090658 59.843 0.25702 59.352 59.214 59.471 -0.49079 24 12 3 0 0 0 0.20727 1 32520 32520 7.9102 2.1497 1 2233900 + 8700 21668 5964 6087 10041 10041 -0.04983664330939064 ELAIIHADLK 10 Unmodified _ELAIIHADLK_ 0 0 0 ENSG00000160396|ENST00000291823|HIPK4 ENSG00000160396|ENST00000291823|HIPK4 ENSG00000160396|ENST00000291823|HIPK4 MSMS AL20221201_MKP_PDAC_01 4 374.8885192871094 3 374.888763 1121.64446 NaN NaN NaN NaN NaN NaN NaN 94.409 1 88.233 87.733 88.733 -6.1757 0 0 0 0.90015 1 62531 62531 7.9454 3.7559 1 8701 6724 5965 6088 10042 10042 0.08850274057158458 ELALLQKSF 9 Unmodified _ELALLQKSF_ 0 0 0 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7415771484375 2 524.8055 1047.59645 0.62531 0.00032817 1.1975 0.00062845 1.8228 0.00095661 524.8061233614625 47.231 0.16828 47.231 47.171 47.339 0 9 7 2 0 0 0 0.16895 1 25877 25877 18.146 9.4009 1 861360 8702 7571 5966 6089 10043 10043 0.07455200137133033 ELALLQKSF 9 Unmodified _ELALLQKSF_ 0 0 0 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.806640625 2 524.8055 1047.59645 0.54255 0.00028473 0.5618 0.00029484 1.1043 0.00057957 524.8057650752347 47.506 0.3894 47.153 46.938 47.328 -0.3526 45 18 3 0 0 0 0.10734 2 25426 25426;25526 32.305 9.5692 1 20714000 8703 7571 5966 6089 10044;10045 10044 0.07455200137133033 ELALLQKSF 9 Unmodified _ELALLQKSF_ 0 0 0 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8060302734375 2 524.8055 1047.59645 1.0911 0.00057264 0.80914 0.00042464 1.9003 0.00099728 524.8056772517338 52.855 0.51162 47.05 46.822 47.334 -5.8042 80 28 4 0 0 0 0.25681 1 33297 33297 19.257 0 1 165010000 8704 7571 5966 6089 10046 10046 0.07455200137133033 ELANLYWFCDE 11 Unmodified _ELANLYWFCDE_ 0 0 0 REV__GUCY2C|p.E869Kfs*23|1|0.08|ENSG00000070019|chr12:14621213-14621213|C/-|frameshift_variant REV__GUCY2C|p.E869Kfs*23|1|0.08|ENSG00000070019|chr12:14621213-14621213|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 701.8038330078125 2 701.802828 1401.5911 -0.080958 -5.6816E-05 1.3218 0.00092766 1.2409 0.00087084 701.8030325624818 62.392 0.28767 62.392 62.219 62.506 0 33 21 2 0 0 0 0.6889 1 34749 34749 5.2969 0 1 4654500 + 8705 17461 5967 6090 10047 10047 -0.09362891507657878 ELAQGRHF 8 Unmodified _ELAQGRHF_ 0 0 0 REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2504272460938 2 479.248683 956.482814 NaN NaN NaN NaN NaN NaN NaN 79.593 1 79.104 78.604 79.604 -0.48932 0 0 0 0.95607 1 43597 43597 9.3474 1.4373 1 + 8706 21225 5968 6091 10048 10048 0.00283149814765693 ELAQGRHF 8 Unmodified _ELAQGRHF_ 0 0 0 REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2505493164062 2 479.248683 956.482814 NaN NaN NaN NaN NaN NaN NaN 94.15 1 93.73 93.23 94.23 -0.42044 0 0 0 0.95607 1 51442 51442 9.3474 3.587 1 + 8707 21225 5968 6091 10049 10049 0.00283149814765693 ELARLEEFS 9 Unmodified _ELARLEEFS_ 0 0 0 REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.280517578125 2 547.279846 1092.54514 0.53595 0.00029332 1.8136 0.00099257 2.3496 0.0012859 547.2811361112283 53.209 0.35948 53.209 53.08 53.439 0 32 15 3 0 0 0 0.03568 1 29484 29484 52.268 3.9225 1 5084400 + 8708 17068 5969 6092 10050 10050 0.002568313724395921 ELARQYWLF 9 Unmodified _ELARQYWLF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3217163085938 2 613.321848 1224.62914 0.63031 0.00038658 -1.3722 -0.00084162 -0.74193 -0.00045504 613.3211018424286 79.062 0.24454 79.117 78.913 79.158 0.05497 20 9 3 0 0 0 0.010611 1 43649 43649 78.728 48.092 1 2362400 8709 2773 5970 6093 10051 10051 0.025814072599814608 ELARQYWLF 9 Unmodified _ELARQYWLF_ 0 0 0 ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 ENSG00000111252|ENST00000341259|SH2B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3236694335938 2 613.321848 1224.62914 1.0705 0.00065654 -0.64644 -0.00039647 0.42403 0.00026007 613.322380105332 96.971 0.23934 90.795 90.622 90.861 -6.1757 22 13 3 0 0 0 0.0086904 1 64250 64250 107.19 62.78 1 12825000 8710 2773 5970 6093 10052 10052 0.025814072599814608 ELASGRKFSL 10 Unmodified _ELASGRKFSL_ 0 0 0 REV__nc|ENSG00000102524|Q9Y275-2|TNFSF13B REV__nc|ENSG00000102524|Q9Y275-2|TNFSF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8766784667969 3 369.876746 1106.60841 -0.40097 -0.00014831 0.010677 3.9492E-06 -0.39029 -0.00014436 369.8766968836339 21.245 0.15528 21.245 21.189 21.345 0 28 20 2 0 0 0 0.67033 1 10746 10746 3.3196 0 1 1581200 + 8711 18240 5971 6094 10053 10053 0.05936816880330298 ELASLEHHI 9 Unmodified _ELASLEHHI_ 0 0 0 REV__ENSG00000140961|ENST00000393306|OSGIN1 REV__ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5200805664062 3 350.185579 1047.53491 0.09886 3.4619E-05 0.55234 0.00019342 0.6512 0.00022804 350.52002246793717 43.283 0.27503 43.283 43.143 43.418 0 24 13 3 0 0 0 0.28047 1 23528 23528 12.241 2.0901 1 2506700 + 8712 20505 5972 6095 10054 10054 0.013042684378433478 ELASPHHP 8 Unmodified _ELASPHHP_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2226257324219 2 444.222134 886.429715 0.60665 0.00026949 0.089675 3.9836E-05 0.69633 0.00030932 444.22208236381897 52.026 0.62489 46.291 46.082 46.707 -5.7345 87 40 3 0 0 0 0.6895 1 32950 32950 18.135 0 1 204030000 8713 3759 5973 6096 10055 10055 -0.018042279679093554 ELATNELEKKL 11 Unmodified _ELATNELEKKL_ 0 0 0 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 MSMS AL20221201_MKP_PDAC_01 4 429.9111022949219 3 429.910004 1286.70818 NaN NaN NaN NaN NaN NaN NaN 95.724 1 89.549 89.049 90.049 -6.1757 0 0 0 0.8881 1 63408 63408 7.846 1.6542 1 + 8714 20725 5974 6097 10056 10056 0.0762958970362888 ELATWSDELH 10 Unmodified _ELATWSDELH_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7787475585938 2 600.78021 1199.54587 -0.094043 -5.6499E-05 -0.3511 -0.00021093 -0.44514 -0.00026743 600.7800378465995 37.532 0.50995 37.532 37.296 37.806 0 81 26 4 0 0 0 0.60623 1 19877 19877 10.824 3.5347 1 107490000 + 8715 18635 5975 6098 10057 10057 -0.04592373978516662 ELAVDGVF 8 Unmodified _ELAVDGVF_ 0 0 0 REV__nc|ENSG00000130167|Q9UKR8-3|TSPAN16 REV__nc|ENSG00000130167|Q9UKR8-3|TSPAN16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2223510742188 2 425.221268 848.427984 0.19957 8.4861E-05 1.0625 0.00045179 1.2621 0.00053665 425.22158223965477 76.079 0.4707 76.127 75.927 76.397 0.047943 43 19 3 0 0 0 0.80143 1 41923 41923 5.7604 0 1 19184000 + 8716 29629 5976 6099 10058 10058 -0.0022928177651238 ELCMLLYSL 9 Unmodified _ELCMLLYSL_ 0 0 0 REV__ENSG00000090863|ENST00000422840|GLG1 REV__ENSG00000090863|ENST00000422840|GLG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1851501464844 3 362.185423 1083.53444 NaN NaN NaN NaN NaN NaN NaN 40.664 1 40.664 40.164 41.164 0 0 0 0 0.82739 1 21871 21871 2.4985 0.90621 1 + 8717 17872 5977 6100 10059 10059 -0.00398610597858351 ELCMLLYSL 9 Unmodified _ELCMLLYSL_ 0 0 0 REV__ENSG00000090863|ENST00000422840|GLG1 REV__ENSG00000090863|ENST00000422840|GLG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.1856079101562 3 362.185423 1083.53444 1.5154 0.00054884 -1.703 -0.0006168 -0.18763 -6.7956E-05 362.1847310205541 40.642 0.40531 36.112 35.934 36.339 -4.5294 37 24 2 0 0 0 0.30562 1 24291 24291 11.495 3.3392 1 9431800 + 8718 17872 5977 6100 10060 10060 -0.00398610597858351 ELCPSLWRW 9 Unmodified _ELCPSLWRW_ 0 0 0 REV__ENST00000372991.8_1_6:41902761-41902899:-|nuORF REV__ENST00000372991.8_1_6:41902761-41902899:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1992797851562 3 397.198943 1188.575 NaN NaN NaN NaN NaN NaN NaN 20.52 1 20.548 20.048 21.048 0.028357 0 0 0 0.85798 1 10389 10389 0.23584 0.095952 1 + 8719 26133 5978 6101 10061 10061 -0.011745081632170695 ELCSTTAY 8 Carbamidomethyl (C) _ELC(Carbamidomethyl (C))STTAY_ ELC(1)STTAY ELC(40)STTAY 0 1 0 ENSG00000237353|ENST00000457514|PATE4 ENSG00000237353|ENST00000457514|PATE4 ENSG00000237353|ENST00000457514|PATE4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7056274414062 2 472.705125 943.395698 1.0179 0.00048119 1.0088 0.00047688 2.0268 0.00095807 472.70557224539704 50.731 0.48906 45.082 44.79 45.28 -5.649 47 30 2 0 0 0 0.44122 1 31928 31928 40.449 6.2612 1 45970000 8720 10652 5979 6102 10062 10062 946 -0.07826437241828899 ELCWRVSHSH 10 Unmodified _ELCWRVSHSH_ 0 0 0 ENST00000569028.2_1_16:34712445-34712784:-|nuORF ENST00000569028.2_1_16:34712445-34712784:-|nuORF ENST00000569028.2_1_16:34712445-34712784:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2954711914062 2 627.295839 1252.57712 0.22861 0.00014341 -0.11185 -7.016E-05 0.11677 7.3247E-05 627.2957208353153 94.106 1.7774 93.686 93.348 95.126 -0.42044 168 91 2 0 0 0 0.67459 1 51927 51927 5.7319 2.4505 1 516830 8721 15455 5980 6103 10063 10063 -0.03906079425428288 ELDDLEYI 8 Unmodified _ELDDLEYI_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7454223632812 2 505.239855 1008.46516 0.75668 0.0003823 0.13495 6.8184E-05 0.89163 0.00045049 505.7426230206085 49.333 0.56595 49.333 49.105 49.671 0 42 25 3 0 0 0 0.77907 1 27083 27083 10.183 0.83596 1 3438000 8722 1425 5981 6104 10064 10064 -0.03873655021413924 ELDETELYM 9 Unmodified _ELDETELYM_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7513427734375 2 571.74973 1141.48491 1.2206 0.00069786 -1.4071 -0.00080452 -0.18655 -0.00010666 571.7486904240574 60.702 0.56908 54.554 54.24 54.809 -6.1478 49 30 2 0 0 0 0.23158 1 39182 39182 20.454 2.3186 1 19637000 8723 5236 5982 6105 10065 10065 -0.08017647072961154 ELDIDLKDI 9 Unmodified _ELDIDLKDI_ 0 0 0 ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820|ENST00000238831|YIPF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2900390625 2 537.289879 1072.56521 NaN NaN NaN NaN NaN NaN NaN 84.116 1 84.179 83.679 84.679 0.063171 0 0 0 0.26667 1 46539 46539 26.884 0 1 8724 3473 5983 6106 10066 10066 0.03182582312388149 ELDLFFGPAE 10 Unmodified _ELDLFFGPAE_ 0 0 0 REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF REV__ENST00000583655.5_1_17:73127274-73127514:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2791137695312 2 569.276772 1136.53899 0.5256 0.00029921 1.463 0.00083287 1.9886 0.0011321 569.2791489683606 97.437 0.21907 97.194 97.001 97.22 -0.24277 13 9 2 0 0 0 0.52888 1 53183 53183 14.838 0 1 782320 + 8725 19493 5984 6107 10067 10067 -0.023816868590984086 ELDNTYIVY 9 Unmodified _ELDNTYIVY_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.273681640625 2 565.274229 1128.53391 0.34924 0.00019742 -0.062877 -3.5542E-05 0.28637 0.00016188 565.2738341652864 61.438 0.23231 61.438 61.297 61.529 0 15 10 2 0 0 0 0.41742 1 34253 34253 11.64 4.3511 1 1041800 8726 9841 5985 6108 10068 10068 -0.025219907217206128 ELDSFPRQSWV 11 Unmodified _ELDSFPRQSWV_ 0 0 0 REV__ENSG00000183463|ENST00000332715|URAD REV__ENSG00000183463|ENST00000332715|URAD MSMS AL20221201_MKP_PDAC_01 4 455.2276611328125 3 455.226215 1362.65681 NaN NaN NaN NaN NaN NaN NaN 101.67 1 95.491 94.991 95.991 -6.1757 0 0 0 0.93933 1 68233 68233 1.2148 0.70888 1 + 8727 23349 5986 6109 10069 10069 -0.010007342704284383 ELDSLTIIFYV 11 Unmodified _ELDSLTIIFYV_ 0 0 0 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.8564453125 2 656.855386 1311.69622 -0.024893 -1.6351E-05 1.4163 0.0009303 1.3914 0.00091395 656.8564396217507 98.027 0.24979 98.027 97.868 98.118 0 24 8 4 0 0 0 0.71036 1 54121 54121 3.2813 0.78282 1 1391100 + 8728 20666 5987 6110 10070 10070 0.05283972960432948 ELDSLTIIFYV 11 Unmodified _ELDSLTIIFYV_ 0 0 0 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 656.855386 1311.69622 -0.024893 -1.6351E-05 1.4163 0.0009303 1.3914 0.00091395 656.8564396217507 98.027 0.24979 98.027 97.868 98.118 0 -0.0022553 -0.00032003 NaN 3.2813 24 8 4 NaN NaN NaN NaN 0 NaN NaN 0 1391100 + 8729 20666 5987 6110 0.05283972960432948 ELDSLTIIFYV 11 Unmodified _ELDSLTIIFYV_ 0 0 0 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 REV__nc|ENSG00000143771|Q9P003-2|CNIH4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 656.855386 1311.69622 0.38464 0.00025266 3.6685 0.0024096 4.0531 0.0026623 656.8583379556181 98.224 0.13058 98.031 97.969 98.099 -0.19321 0.0022553 0.0026387 NaN 3.2813 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 303020 + 8730 20666 5987 6110 0.05283972960432948 ELEAATHNRPL 11 Unmodified _ELEAATHNRPL_ 0 0 0 ENST00000485596.5_1_15:85634092-85681131:+|nuORF;nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A ENST00000485596.5_1_15:85634092-85681131:+|nuORF ENST00000485596.5_1_15:85634092-85681131:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.5552062988281 3 417.554443 1249.6415 NaN NaN NaN NaN NaN NaN NaN 21.169 1 21.169 20.669 21.669 0 0 0 0 0.93613 1 10695 10695 4.4062 0 1 8731 1105 5988 6111 10071 10071 0.026663989323878923 ELEAHTRL 8 Unmodified _ELEAHTRL_ 0 0 0 REV__nc|ENSG00000075651|Q13393-4|PLD1 REV__nc|ENSG00000075651|Q13393-4|PLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7605285644531 2 484.761623 967.508694 -0.025243 -1.2237E-05 0.44197 0.00021425 0.41673 0.00020201 484.76162086350666 44.418 0.24763 44.418 44.284 44.532 0 20 12 2 0 0 0 0.40035 1 24136 24136 44.407 8.3628 1 9658500 + 8732 17573 5989 6112 10072 10072 0.023639992663675002 ELEAIMYAL 9 Unmodified _ELEAIMYAL_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;ENST00000512029.1_1_5:118832263-118835290:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7696533203125 2 526.770268 1051.52598 NaN NaN NaN NaN NaN NaN NaN 78.206 1 78.259 77.759 78.759 0.052452 0 0 0 0.57317 1 43183 43183 13.508 2.3934 1 8733 4536 5990 6113 10073 10073 0.0022815875715878065 ELEDLRFPL 9 Unmodified _ELEDLRFPL_ 0 0 0 ENSG00000155367|ENST00000309276|PPM1J;nc|ENSG00000155367|Q5JR12-2|PPM1J;ENST00000471106.5_1_1:113252636-113254039:-|nuORF ENSG00000155367|ENST00000309276|PPM1J ENSG00000155367|ENST00000309276|PPM1J MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.3077392578125 2 566.305864 1130.59717 0.4314 0.0002443 0.48901 0.00027693 0.92041 0.00052123 566.3057804571807 59.251 0.28384 59.251 59.095 59.379 0 28 11 3 0 0 0 0.076472 1 32976 32976 49.933 0 1 4693000 8734 6384 5991 6114 10074 10074 0.03709994786186144 ELEEEPAQGD 10 Unmodified _ELEEEPAQGD_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.738525390625 2 558.738208 1115.46186 -0.22569 -0.0001261 0.73229 0.00040916 0.5066 0.00028306 558.7388762641796 17.715 0.4436 17.715 17.366 17.81 0 161 73 3 0 0 0 0.71276 1 8573 8573 1.4819 0.15237 1 1608000 8735 9912 5992 6115 10075 10075 -0.09124949866077259 ELEEEQESME 10 Unmodified _ELEEEQESME_ 0 0 0 REV__ENSG00000130349|ENST00000311381|MTRES1 REV__ENSG00000130349|ENST00000311381|MTRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1253.278076171875 1 1252.48855 1251.48128 0.78396 0.0009819 -1.8157 -0.0022741 -1.0317 -0.0012922 1252.4869561671762 80.994 0.075226 74.818 74.77 74.845 -6.1757 5 3 2 0 0 0 0.71413 1 53140 53140 1.3295 0 1 9568300 + 8736 19717 5993 6116 10076 10076 -0.13440361637481146 ELEEKKKKILQ 11 Unmodified _ELEEKKKKILQ_ 0 0 0 REV__nc|ENSG00000168309|O95990-2|FAM107A REV__nc|ENSG00000168309|O95990-2|FAM107A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.4224853515625 2 693.421759 1384.82897 NaN NaN NaN NaN NaN NaN NaN 96.931 1 96.931 96.431 97.431 0 0 0 0 0.94184 1 53563 53563 1.1933 0 1 + 8737 22304 5994 6117 10077 10077 0.15194417417114892 ELEKLDQF 8 Unmodified _ELEKLDQF_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.7494506835938 2 511.263665 1020.51278 0.44597 0.00022801 0.17527 8.9612E-05 0.62125 0.00031762 511.2634679203458 35.334 0.37526 31.239 31.041 31.416 -4.0951 39 22 2 0 0 0 8.7369 1 20388 20388 26.884 0 1 39003000 + 8738 20755 5995 6118 10078 10078 0.003340439694397901 ELEKQHKREKE 11 Unmodified _ELEKQHKREKE_ 0 0 0 REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1;REV__ENSG00000188026|ENST00000376874|RILPL1 REV__ENSG00000188026|ENST00000376874|RILPL1 MSMS AL20221201_MKP_PDAC_01 4 727.393798828125 2 727.391522 1452.76849 NaN NaN NaN NaN NaN NaN NaN 82.69 1 76.514 76.014 77.014 -6.1757 0 0 0 0.93737 1 54328 54328 5.2969 1.7004 1 + 8739 29861;23681 5996 6119 10079 10079 0.06021700086671444 ELEKRMLEL 9 Oxidation (M) _ELEKRM(Oxidation (M))LEL_ ELEKRM(1)LEL ELEKRM(63)LEL 0 0 1 REV__ENSG00000162722|ENST00000366481|TRIM58 REV__ENSG00000162722|ENST00000366481|TRIM58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8175048828125 2 588.818281 1175.62201 -1.0669 -0.00062819 0.29109 0.0001714 -0.77577 -0.00045679 588.8186901094144 32.247 0.29039 32.247 32.084 32.374 0 43 14 4 0 0 0 0.020973 1 16908 16908 62.573 10.943 1 6686100 + 8740 21681 5997 6120 10080 10080 1845 0.041223065972872064 ELEKTEADNA 10 Unmodified _ELEKTEADNA_ 0 0 0 ENSG00000183072|ENST00000329198|NKX2-5 ENSG00000183072|ENST00000329198|NKX2-5 ENSG00000183072|ENST00000329198|NKX2-5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5088806152344 3 373.843659 1118.50915 0.54889 0.0002052 0.75322 0.00028159 1.3021 0.00048679 373.8426159197975 28.07 0.18532 28.023 27.956 28.142 -0.046408 14 6 3 0 0 0 0.62068 1 14522 14522 5.7834 0 1 2266800 8741 9112 5998 6121 10081 10081 -0.045366705950755204 ELEKVQQFYGF 11 Unmodified _ELEKVQQFYGF_ 0 0 0 REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF REV__ENST00000563240.1_1_15:34653546-34654988:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2353210449219 3 463.234599 1386.68197 1.0779 0.0004993 -0.13063 -6.0512E-05 0.94723 0.00043879 463.23397508477876 87.117 0.91832 80.942 80.303 81.221 -6.1757 78 49 3 0 0 0 0.67477 1 57448 57448 6.6235 1.5759 1 26290000 + 8742 28868 5999 6122 10082 10082 0.004093205321396454 ELELMKKLK 9 Unmodified _ELELMKKLK_ 0 0 0 nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8987426757812 3 377.898382 1130.67332 -0.15159 -5.7285E-05 1.093 0.00041306 0.94146 0.00035577 377.89859179404453 32.402 0.33266 32.431 32.258 32.591 0.029743 34 13 3 0 0 0 0.59218 1 16974 16974 0.96228 0.3991 1 4696800 8743 7428 6000 6123 10083 10083 0.1132067536195791 ELELQEQSL 9 Unmodified _ELELQEQSL_ 0 0 0 ENST00000571861.5_1_17:78162196-78169468:+|nuORF;nc|ENSG00000141527|Q9BXL6-3|CARD14;nc|ENSG00000141527|Q9BXL6-2|CARD14;ENSG00000141527|ENST00000648509|CARD14 ENST00000571861.5_1_17:78162196-78169468:+|nuORF ENST00000571861.5_1_17:78162196-78169468:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7794799804688 2 544.777136 1087.53972 1.4042 0.00076497 2.311 0.001259 3.7152 0.0020239 544.7786794370552 101 0.18741 94.821 94.701 94.889 -6.1757 25 10 3 0 0 0 0.16226 1 67688 67688 26.884 3.7352 1 41516000 8744 5346 6001 6124 10084 10084 -0.0005489221005063882 ELENDELFLF 10 Unmodified _ELENDELFLF_ 0 0 0 REV__ENSG00000139330|ENST00000266719|KERA REV__ENSG00000139330|ENST00000266719|KERA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8074340820312 2 634.805894 1267.59723 0.18441 0.00011707 0.59958 0.00038062 0.78399 0.00049768 634.8060821053067 84.435 0.68343 83.935 83.594 84.278 -0.49961 45 30 2 0 0 0 0.67033 1 46205 46205 6.2058 0.9089 1 725480 + 8745 20404 6002 6125 10085 10085 -0.025860500044927903 ELEQLKKDL 9 Unmodified _ELEQLKKDL_ 0 0 0 nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5489196777344 3 372.548406 1114.62339 1.3563 0.00050531 -0.0077478 -2.8864E-06 1.3486 0.00050242 372.5483260062008 58.252 0.9781 52.218 51.982 52.96 -6.0344 112 53 4 0 0 0 0.15882 1 37330 37330 27.223 1.2025 1 130320000 8746 7585 6003 6126 10086 10086 0.0706626395767671 ELEQMEDFF 9 Unmodified _ELEQMEDFF_ 0 0 0 ENSG00000169136|ENST00000423777|ATF5 ENSG00000169136|ENST00000423777|ATF5 ENSG00000169136|ENST00000423777|ATF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2434692382812 2 594.249897 1186.48524 0.02894 1.7198E-05 -1.8902 -0.0011232 -1.8613 -0.001106 594.2484568647749 72.113 0.64071 72.113 71.944 72.585 0 65 27 3 0 0 0 0.54444 1 40303 40303 4.756 0.81161 1 4855600 8747 7839 6004 6127 10087 10087 -0.10054227353111855 ELEQNLGEL 9 Unmodified _ELEQNLGEL_ 0 0 0 REV__ENSG00000121104|ENST00000240364|FAM117A REV__ENSG00000121104|ENST00000240364|FAM117A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7646484375 2 522.764029 1043.5135 -0.015885 -8.304E-06 1.073 0.00056092 1.0571 0.00055261 522.7651368098822 55.796 0.16768 55.318 55.192 55.36 -0.47798 11 7 2 0 0 0 0.34999 1 30282 30282 14.838 0.25658 1 1206700 + 8748 19279 6005 6128 10088 10088 -0.0065116138150642655 ELEQNLGEL 9 Unmodified _ELEQNLGEL_ 0 0 0 REV__ENSG00000121104|ENST00000240364|FAM117A REV__ENSG00000121104|ENST00000240364|FAM117A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 522.764029 1043.5135 0.3667 0.0001917 -2.58 -0.0013487 -2.2133 -0.001157 522.7616908410392 55.017 0.13279 55.017 54.968 55.101 0 -0.15046 -0.0014868 NaN 14.838 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 343410 + 8749 19279 6005 6128 -0.0065116138150642655 ELEQNLGEL 9 Unmodified _ELEQNLGEL_ 0 0 0 REV__ENSG00000121104|ENST00000240364|FAM117A REV__ENSG00000121104|ENST00000240364|FAM117A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.764029 1043.5135 -0.015885 -8.304E-06 1.073 0.00056092 1.0571 0.00055261 522.7651368098822 55.796 0.16768 55.318 55.192 55.36 -0.47798 0.15046 0.0023326 NaN 14.838 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1206700 + 8750 19279 6005 6128 -0.0065116138150642655 ELEQPLVP 8 Unmodified _ELEQPLVP_ 0 0 0 REV__ENST00000522899.1_1_8:144461534-144462449:+|nuORF REV__ENST00000522899.1_1_8:144461534-144462449:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7562866210938 2 462.755475 923.496398 0.70314 0.00032538 -0.24597 -0.00011383 0.45716 0.00021155 462.7552743195499 69.271 0.38265 69.271 69.084 69.467 0 40 16 4 0 0 0 0.40035 1 38667 38667 44.407 0 1 2290500 + 8751 21417 6006 6129 10089 10089 0.03158962803331633 ELEQRPAL 8 Unmodified _ELEQRPAL_ 0 0 0 ENST00000567209.2_1_16:28985574-28985997:-|nuORF ENST00000567209.2_1_16:28985574-28985997:-|nuORF ENST00000567209.2_1_16:28985574-28985997:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2629699707031 2 478.263999 954.513445 0.56921 0.00027223 1.0668 0.00051023 1.6361 0.00078247 478.2646687882711 36.301 0.36443 32.108 31.914 32.278 -4.1928 34 21 2 0 0 0 0.26159 1 21251 21251 60.39 2.6676 1 19166000 8752 15431 6007 6130 10090 10090 0.03436883409131042 ELERAPGD 8 Unmodified _ELERAPGD_ 0 0 0 ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2507019042969 2 443.716882 885.41921 -0.2345 -0.00010405 -1.8656 -0.00082778 -2.1001 -0.00093183 443.71577270891436 19.49 0.23452 19.49 19.372 19.607 0 65 28 3 0 0 0 8.7369 1 9788 9788 19.257 11.968 1 4694600 8753 7850 6008 6131 10091 10091 -0.028082554129923665 ELERLRRLAA 10 Unmodified _ELERLRRLAA_ 0 0 0 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.58447265625 3 409.582444 1225.7255 -0.092701 -3.7969E-05 2.0762 0.00085039 1.9835 0.00081242 409.58330991379137 28.568 0.47245 28.597 28.444 28.917 0.029564 34 18 2 0 0 0 0.67755 1 14947 14947 5.4027 0.99656 1 10401000 + 8754 23611 6009 6132 10092 10092 0.1216697481997926 ELESSQEEIQ 10 Unmodified _ELESSQEEIQ_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8522338867188 3 397.850702 1190.53028 NaN NaN NaN NaN NaN NaN NaN 38.232 1 38.232 37.732 38.732 0 0 0 0 0.71157 1 20406 20406 14.218 6.2728 1 8755 3067 6010 6133 10093 10093 -0.05736705286221877 ELETGFHRF 9 Unmodified _ELETGFHRF_ 0 0 0 ENST00000589453.5_1_19:9866257-9869416:-|nuORF ENST00000589453.5_1_19:9866257-9869416:-|nuORF ENST00000589453.5_1_19:9866257-9869416:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2808837890625 2 568.28018 1134.54581 NaN NaN NaN NaN NaN NaN NaN 64.886 1 64.886 64.386 65.386 0 0 0 0 0.7453 1 36191 36191 7.9102 0 1 8756 15670 6011 6134 10094 10094 -0.0160832918786582 ELETLWHMI 9 Unmodified _ELETLWHMI_ 0 0 0 REV__nc|ENSG00000115252|P54750-3|PDE1A REV__nc|ENSG00000115252|P54750-3|PDE1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.29541015625 2 586.294442 1170.57433 NaN NaN NaN NaN NaN NaN NaN 17.391 1 17.396 16.896 17.896 0.0050564 0 0 0 0.85737 1 8770 8770 0.6015 0 1 + 8757 18963 6012 6135 10095 10095 -0.004133476029210215 ELEVFNGY 8 Unmodified _ELEVFNGY_ 0 0 0 ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1 ENSG00000151655|ENST00000358415|ITIH2;CON__Q9TRI1 ENSG00000151655|ENST00000358415|ITIH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7290954589844 2 485.729458 969.444362 0.61651 0.00029945 -0.67803 -0.00032934 -0.061528 -2.9886E-05 485.7291261373014 60.047 0.23724 60.047 59.962 60.199 0 16 10 2 0 0 0 0.80232 1 33470 33470 5.2307 0.47466 1 776460 + 8758 6132;213 6013 6136 10096 10096 -0.04158200610413587 ELEYFLESYEL 11 Unmodified _ELEYFLESYEL_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 717.842529296875 2 717.837391 1433.66023 -0.0035815 -2.571E-06 4.4472 0.0031924 4.4437 0.0031898 717.8401795771573 61.585 0.23031 61.585 61.411 61.641 0 16 10 2 0 0 0 0.6889 1 34299 34299 5.2969 0.39987 1 1562500 + 8759 21509 6014 6137 10097 10097 -0.03925529007096884 ELFCLWPSR 9 Unmodified _ELFCLWPSR_ 0 0 0 REV__ENST00000546889.1_1_12:53895138-53896156:+|nuORF REV__ENST00000546889.1_1_12:53895138-53896156:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.791015625 2 575.789327 1149.5641 NaN NaN NaN NaN NaN NaN NaN 25.053 1 22.17 21.67 22.67 -2.8831 0 0 0 0.54558 1 13682 13682 10.074 0 1 + 8760 28666 6015 6138 10098 10098 -0.0046991053750389256 ELFEFVTDPSI 11 Unmodified _ELFEFVTDPSI_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8849182128906 3 432.883455 1295.62853 NaN NaN NaN NaN NaN NaN NaN 76.064 1 76.064 75.564 76.564 0 0 0 0 0.93694 1 42299 42299 4.7159 0.30977 1 8761 3817 6016 6139 10099 10099 -0.007454769703599595 ELFFKDAANN 10 Unmodified _ELFFKDAANN_ 0 0 0 ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1923522949219 3 390.192623 1167.55604 -0.47967 -0.00018716 -0.077313 -3.0167E-05 -0.55698 -0.00021733 390.1925732703975 25.316 0.33917 25.316 25.147 25.486 0 44 16 3 0 0 0 0.67459 1 13019 13019 3.0723 0.78949 1 7849300 8762 14678 6017 6140 10100 10100 -0.021037662532762624 ELFFKDAANN 10 Unmodified _ELFFKDAANN_ 0 0 0 ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.1925659179688 3 390.192623 1167.55604 0.96935 0.00037823 0.32268 0.00012591 1.292 0.00050414 390.19265033993327 28.4 0.41739 25.252 25.059 25.476 -3.1482 58 21 4 0 0 0 0.67459 1 15799 15799 3.0723 0.44103 1 29600000 8763 14678 6017 6140 10101 10101 -0.021037662532762624 ELFFKDAANN 10 Unmodified _ELFFKDAANN_ 0 0 0 ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 390.192623 1167.55604 0.96935 0.00037823 0.32268 0.00012591 1.292 0.00050414 390.19265033993327 28.4 0.41739 25.252 25.059 25.476 -3.1482 -0.031895 0.00024369 NaN 3.0723 58 21 4 NaN NaN NaN NaN 0 NaN NaN 0 29600000 8764 14678 6017 6140 -0.021037662532762624 ELFGELNHF 9 Unmodified _ELFGELNHF_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2685546875 2 553.269281 1104.52401 0.66463 0.00036772 -2.2796 -0.0012612 -1.615 -0.00089352 553.268103354098 84.162 0.31205 83.662 83.485 83.797 -0.49961 22 13 2 0 0 0 0.30562 1 46038 46038 16.942 1.0951 1 1081000 + 8765 18759 6018 6141 10102 10102 -0.02407133936435457 ELFIETYRA 9 Unmodified _ELFIETYRA_ 0 0 0 REV__ENST00000466084.1_1_3:44959495-44960555:-|nuORF REV__ENST00000466084.1_1_3:44959495-44960555:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2991333007812 2 571.298039 1140.58152 0.3265 0.00018653 -2.0082 -0.0011473 -1.6817 -0.00096076 571.2974066615072 64.229 0.21899 64.229 64.126 64.345 0 18 9 3 0 0 0 0.43463 1 35810 35810 10.824 0 1 1363600 + 8766 27402 6019 6142 10103 10103 0.01685708269155839 ELFIFCWKL 9 Unmodified _ELFIFCWKL_ 0 0 0 ENST00000393599.2_1_19:10677177-10677294:-|nuORF ENST00000393599.2_1_19:10677177-10677294:-|nuORF ENST00000393599.2_1_19:10677177-10677294:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.217529296875 3 400.215822 1197.62564 NaN NaN NaN NaN NaN NaN NaN 50.044 1 44.504 44.004 45.004 -5.5391 0 0 0 0.7453 1 31337 31337 4.897 0 1 8767 12708 6020 6143 10104 10104 0.03473021161767065 ELFRLSLDY 9 Unmodified _ELFRLSLDY_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3079223632812 2 578.305864 1154.59717 NaN NaN NaN NaN NaN NaN NaN 28.523 1 28.552 28.052 29.052 0.029564 0 0 0 0.84892 1 14853 14853 1.6526 0 1 + 8768 19846 6021 6144 10105 10105 0.026059947862222543 ELFVSTQNTM 10 Unmodified _ELFVSTQNTM_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5216064453125 3 390.521751 1168.54342 -0.016493 -6.4407E-06 -0.6651 -0.00025974 -0.6816 -0.00026618 390.5213855430891 18.433 0.13784 18.439 18.355 18.493 0.0060463 13 6 3 0 0 0 0.69064 1 9350 9350 1.9064 0 1 1417400 8769 6567 6022 6145 10106 10106 -0.034105457078339896 ELFWHCCFL 9 Unmodified _ELFWHCCFL_ 0 0 0 ENST00000372068.6_1_X:109352327-109352363:+|nuORF ENST00000372068.6_1_X:109352327-109352363:+|nuORF ENST00000372068.6_1_X:109352327-109352363:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2635498046875 2 599.26463 1196.51471 NaN NaN NaN NaN NaN NaN NaN 77.587 1 77.104 76.604 77.604 -0.4826 0 0 0 0.84564 1 42476 42476 2.0598 0 1 8770 12372 6023 6146 10107 10107 -0.075689418179536 ELGELQPPLF 10 Unmodified _ELGELQPPLF_ 0 0 0 nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8093872070312 2 571.808239 1141.60193 0.51016 0.00029172 -1.3666 -0.00078145 -0.85647 -0.00048973 571.8085126470045 63.226 0.49951 62.74 62.562 63.061 -0.48617 60 22 4 0 0 0 0.52888 1 34435 34435 14.838 0.93222 1 6596600 8771 7714 6024 6147 10108 10108 0.03678878928940321 ELGELQPPLF 10 Unmodified _ELGELQPPLF_ 0 0 0 nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8087768554688 2 571.808239 1141.60193 0.52922 0.00030261 -0.24046 -0.0001375 0.28876 0.00016512 572.3093140609122 64.997 0.51747 64.513 64.209 64.727 -0.48428 32 23 2 0 0 0 0.67033 1 35459 35459 6.2058 0.44535 1 977770 8772 7714 6024 6147 10109 10109 0.03678878928940321 ELGETIAII 9 Unmodified _ELGETIAII_ 0 0 0 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 ENSG00000167625|ENST00000301215|ZNF526 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5479125976562 1 958.545539 957.538263 -0.1295 -0.00012413 0.56404 0.00054066 0.43454 0.00041653 958.5462699519503 65.234 0.20284 65.234 65.093 65.296 0 11 7 2 0 0 0 0.30562 1 36405 36405 16.942 4.4107 1 480720 8773 7642 6025 6148 10110 10110 0.057795184918632 ELGHVLSMP 9 Unmodified _ELGHVLSMP_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2608337402344 2 491.754953 981.495352 0.60867 0.00029932 -1.962 -0.00096483 -1.3533 -0.00066551 491.75364206906585 68.146 0.38852 61.97 61.754 62.143 -6.1757 35 22 2 0 0 0 0.081537 1 44463 44463 34.102 5.9292 1 19498000 8774 4655 6026 6149 10111 10111 0.0038642516277604955 ELGLLEASYQA 11 Unmodified _ELGLLEASYQA_ 0 0 0 ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3058471679688 2 597.306061 1192.59757 -0.51891 -0.00030995 0.30646 0.00018305 -0.21245 -0.0001269 597.3063212514655 41.063 0.78241 41.063 40.639 41.422 0 214 58 5 0 0 0 0.5229 1 22111 22111 15.248 1.3424 1 393470000 8775 14966 6027 6150 10112 10112 0.008973697153805915 ELGLLEASYQA 11 Unmodified _ELGLLEASYQA_ 0 0 0 ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3064575195312 2 597.306061 1192.59757 -0.039706 -2.3717E-05 0.29369 0.00017542 0.25399 0.00015171 597.3061757176437 41.401 0.35817 41.098 40.929 41.287 -0.30304 41 16 3 0 0 0 0.5229 1 21909 21909 15.248 0.41021 1 5315300 8776 14966 6027 6150 10113 10113 0.008973697153805915 ELGLLEASYQA 11 Unmodified _ELGLLEASYQA_ 0 0 0 ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF ENST00000535092.1_1_12:118454694-118455813:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3073120117188 2 597.306061 1192.59757 0.0028038 1.6748E-06 0.50364 0.00030083 0.50644 0.0003025 597.3065065461271 41.053 0.40759 41.051 40.891 41.298 -0.0017929 32 19 2 0 0 0 0.53952 1 21912 21912 14.405 2.1647 1 2688000 8777 14966 6027 6150 10114 10114 0.008973697153805915 ELGMCRISF 9 Unmodified _ELGMCRISF_ 0 0 0 ENST00000505526.1_1_5:271863-311637:+|nuORF ENST00000505526.1_1_5:271863-311637:+|nuORF ENST00000505526.1_1_5:271863-311637:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.254150390625 2 528.254262 1054.49397 1.0623 0.00056115 0.37425 0.0001977 1.4365 0.00075885 528.2543968616892 79.961 0.48608 73.786 73.567 74.054 -6.1757 48 29 2 0 0 0 0.2143 1 52417 52417 21.747 3.6003 1 30109000 8778 14514 6028 6151 10115 10115 -0.03109532197640874 ELGNIKTMF 9 Unmodified _ELGNIKTMF_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.77490234375 2 526.775885 1051.53722 0.18618 9.8074E-05 -0.2321 -0.00012227 -0.045923 -2.4191E-05 526.774872702451 70.554 0.17019 70.076 70.055 70.225 -0.47736 23 16 2 0 0 0 0.14 1 38603 38603 29.082 5.9332 1 3103400 + 8779 19463 6029 6152 10116 10116 0.013509808512935706 ELGNIKTMF 9 Unmodified _ELGNIKTMF_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.775885 1051.53722 0.18618 9.8074E-05 -0.2321 -0.00012227 -0.045923 -2.4191E-05 526.774872702451 70.554 0.17019 70.076 70.055 70.225 -0.47736 0 0 NaN 29.082 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3103400 + 8780 19463 6029 6152 0.013509808512935706 ELGPLLLTYL 10 Unmodified _ELGPLLLTYL_ 0 0 0 REV__ENSG00000187492|ENST00000412678|CDHR4 REV__ENSG00000187492|ENST00000412678|CDHR4 MSMS AL20221201_MKP_PDAC_01 4 377.5590209960938 3 377.893514 1130.65871 NaN NaN NaN NaN NaN NaN NaN 92.68 1 86.504 86.004 87.004 -6.1757 0 0 0 0.87645 1 61297 61297 8.9762 0 1 + 8781 23635 6030 6153 10117 10117 0.0986092648547583 ELGRRQWWWRR 11 Unmodified _ELGRRQWWWRR_ 0 0 0 ENST00000296754.7_2_5:96139638-96143632:-|nuORF ENST00000296754.7_2_5:96139638-96143632:-|nuORF ENST00000296754.7_2_5:96139638-96143632:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 814.9374389648438 2 814.937099 1627.85965 NaN NaN NaN NaN NaN NaN NaN 62.781 1 62.295 61.795 62.795 -0.48617 0 0 0 0.94307 1 34224 34224 0.30703 0 1 8782 11514 6031 6154 10118 10118 0.07083053365340675 ELGTLEYLL 9 Unmodified _ELGTLEYLL_ 0 0 0 PLEKHA4|p.R462_L465del|1|0.07|ENSG00000105559|chr19:48852262-48852273|GTCTCTCTTAAG/-|inframe_deletion PLEKHA4|p.R462_L465del|1|0.07|ENSG00000105559|chr19:48852262-48852273|GTCTCTCTTAAG/-|inframe_deletion PLEKHA4|p.R462_L465del|1|0.07|ENSG00000105559|chr19:48852262-48852273|GTCTCTCTTAAG/-|inframe_deletion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7892456054688 2 525.789515 1049.56448 NaN NaN NaN NaN NaN NaN NaN 85 1 84.498 83.998 84.998 -0.5015 0 0 0 0.39118 1 46510 46510 28.487 11.545 1 8783 16687 6032 6155 10119 10119 0.041677876633457345 ELGYIFEGSH 10 Unmodified _ELGYIFEGSH_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-2|VPS13C REV__nc|ENSG00000129003|Q709C8-2|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2726440429688 2 576.272021 1150.52949 0.58402 0.00033655 0.20088 0.00011576 0.7849 0.00045232 576.2720578585527 87.553 0.88803 87.049 86.42 87.308 -0.50423 94 38 4 0 0 0 0.62068 1 47858 47858 10.074 3.3508 1 5597400 + 8784 19645 6033 6156 10120 10120 -0.03975455144609441 ELHACGNHHVI 11 Unmodified _ELHACGNHHVI_ 0 0 0 REV__ENSG00000131899|ENST00000316843|LLGL1 REV__ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3001098632812 2 615.295839 1228.57712 0.55515 0.00034158 -0.19961 -0.00012282 0.35555 0.00021877 615.2953272473362 92.29 0.6624 91.809 91.525 92.187 -0.48092 73 31 4 0 0 0 0.7326 1 50635 50635 1.1933 0.59184 1 2235900 + 8785 19817 6034 6157 10121 10121 -0.02802079425418924 ELHASIHDNKM 11 Unmodified _ELHASIHDNKM_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.81396484375 2 647.814061 1293.61357 0.97273 0.00063015 0.75174 0.00048699 1.7245 0.0011171 647.8142285075195 80.034 0.41812 73.858 73.586 74.004 -6.1757 37 25 2 0 0 0 0.26767 1 52551 52551 28.495 2.2264 1 17588000 + 8786 21279 6035 6158 10122 10122 -0.021492473193802653 ELHCDAHY 8 Unmodified _ELHCDAHY_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2897338867188 2 494.203084 986.391615 0.30282 0.00014965 0.55078 0.0002722 0.8536 0.00042185 494.20356965800215 51.612 0.51864 51.612 51.412 51.93 0 123 23 8 0 0 0 8.7369 1 28670 28670 6.3541 0 1 144280000 + 8787 16987 6036 6159 10123 10123 -0.1021248194489317 ELHFCWLIL 9 Unmodified _ELHFCWLIL_ 0 0 0 REV__ENSG00000106993|ENST00000381854|CDC37L1 REV__ENSG00000106993|ENST00000381854|CDC37L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.3110961914062 2 587.309895 1172.60524 NaN NaN NaN NaN NaN NaN NaN 77.112 1 77.112 76.612 77.612 0 0 0 0 0.84564 1 42870 42870 2.0598 0 1 + 8788 18546 6037 6160 10124 10124 0.025838505019692093 ELHFRYTFSP 10 Unmodified _ELHFRYTFSP_ 0 0 0 REV__ENST00000522009.1_1_8:57083687-57083816:-|nuORF REV__ENST00000522009.1_1_8:57083687-57083816:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8858947753906 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 57.897 1 57.831 57.331 58.331 -0.066036 0 0 0 0.99008 1 31522 31522 1.7423 0.41263 1 + 8789 28293 6038 6161 10125 10125 -0.006117980909493781 ELHHGEFCS 9 Unmodified _ELHHGEFCS_ 0 0 0 ENST00000534280.5_1_19:50180503-50183151:+|nuORF ENST00000534280.5_1_19:50180503-50183151:+|nuORF ENST00000534280.5_1_19:50180503-50183151:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7230834960938 2 529.721641 1057.42873 -0.057396 -3.0404E-05 0.72357 0.00038329 0.66618 0.00035289 529.721882294798 76.554 0.53122 76.074 75.812 76.343 -0.47945 61 31 2 0 0 0 0.53557 1 41819 41819 2.0598 0 1 15596000 8790 14949 6039 6162 10126 10126 -0.09768810399100403 ELHMIHNWV 9 Unmodified _ELHMIHNWV_ 0 0 0 REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5310974121094 3 393.530693 1177.57025 -0.34511 -0.00013581 -0.19966 -7.8572E-05 -0.54476 -0.00021438 393.5307996312161 36.433 0.21347 36.455 36.323 36.536 0.021545 14 9 2 0 0 0 0.41742 1 19301 19301 7.609 0 1 2580100 + 8791 24482 6040 6163 10127 10127 -0.011433923059939843 ELHNHHFL 8 Unmodified _ELHNHHFL_ 0 0 0 REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2657470703125 2 523.761958 1045.50936 0.45968 0.00024076 1.0743 0.00056267 1.534 0.00080343 523.7624432028219 76.652 0.21678 76.652 76.491 76.708 0 12 8 2 0 0 0 0.80624 1 42625 42625 2.8892 0 1 333440 + 8792 25948 6041 6164 10128 10128 -0.011571612938951148 ELHSDVIEY 9 Unmodified _ELHSDVIEY_ 0 0 0 nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.27734375 2 552.764029 1103.5135 0.52181 0.00028844 -0.70551 -0.00038998 -0.1837 -0.00010154 553.2650472422694 46.288 0.11486 41.333 41.241 41.355 -4.9549 12 7 2 0 0 0 0.25681 1 28492 28492 19.257 7.7623 1 7910500 8793 10231 6042 6165 10129 10129 -0.03411161381518468 ELHSLWEQL 9 Unmodified _ELHSLWEQL_ 0 0 0 REV__ENSG00000110756|ENST00000349215|HPS5 REV__ENSG00000110756|ENST00000349215|HPS5 MSMS AL20221201_MKP_PDAC_01 4 385.5342407226562 3 385.532868 1153.57677 NaN NaN NaN NaN NaN NaN NaN 39.546 1 35.095 34.595 35.595 -4.4509 0 0 0 0.50124 1 23486 23486 10.8 2.3552 1 + 8794 18720 6043 6166 10130 10130 0.006128241263922973 ELHTACLRENA 11 Unmodified _ELHTACLRENA_ 0 0 0 ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;ENST00000470191.5_1_9:15845666-15971831:+|nuORF;ENST00000486641.2_1_9:15874547-16020617:+|nuORF ENSG00000164989|ENST00000380701|CCDC171 ENSG00000164989|ENST00000380701|CCDC171 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.8073120117188 2 628.806236 1255.59792 0.19806 0.00012454 3.0705 0.0019307 3.2685 0.0020553 628.8080448460412 87.18 0.21111 87.18 87.147 87.358 0 13 10 2 0 0 0 0.71618 1 48282 48282 2.7352 1.2533 1 377640 8795 7277 6044 6167 10131 10131 -0.019655338363918418 ELHYLEVY 8 Unmodified _ELHYLEVY_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2666625976562 2 533.266207 1064.51786 0.61027 0.00032543 0.70674 0.00037688 1.317 0.00070232 533.2663558952538 72.929 0.48563 72.453 72.209 72.695 -0.47588 71 21 4 0 0 0 0.67481 1 40013 40013 19.439 0.18201 1 9604200 8796 1001 6045 6168 10132 10132 -0.01181652167952052 ELHYLEVYL 9 Unmodified _ELHYLEVYL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.7329711914062 3 393.541252 1177.60193 1.3669 0.00053795 -1.8139 -0.00071386 -0.447 -0.00017591 393.5405154923232 20.254 0.57338 17.561 17.368 17.941 -2.693 70 36 3 0 0 0 0.18811 1 10779 10779 12.241 0.72278 1 5938800 8797 1001 6046 6169 10133 10133 0.02022878928960381 ELHYLEVYL 9 Unmodified _ELHYLEVYL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 393.541252 1177.60193 -0.063849 -2.5127E-05 -0.91511 -0.00036013 -0.97896 -0.00038526 393.54074804389495 17.179 0.08419 17.184 17.132 17.216 0.0050564 -0.18833 0.00094645 NaN 12.241 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 724330 8798 1001 6046 6169 0.02022878928960381 ELIEEYDHE 9 Unmodified _ELIEEYDHE_ 0 0 0 REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MSMS AL20221201_MKP_PDAC_01 4 392.8394165039062 3 392.840026 1175.49825 NaN NaN NaN NaN NaN NaN NaN 43.214 1 38.449 37.949 38.949 -4.7648 0 0 0 0.82739 1 26221 26221 2.4985 0 1 + 8799 19743 6047 6170 10134 10134 -0.08248072969354325 ELIEVHSL 8 Unmodified _ELIEVHSL_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;ENST00000595897.5_1_19:42402462-42407822:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2799682617188 2 470.260925 938.507297 0.34932 0.00016427 -0.42777 -0.00020116 -0.078446 -3.689E-05 470.26064748150856 69.774 0.3091 69.774 69.578 69.887 0 21 14 2 0 0 0 8.7369 1 38935 38935 19.439 0 1 1121200 8800 1198 6048 6171 10135 10135 0.035583651776164515 ELIEYQSN 8 Unmodified _ELIEYQSN_ 0 0 0 nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2588195800781 2 498.237647 994.460741 0.25506 0.00012708 3.2035 0.0015961 3.4586 0.0017232 498.23889900810974 69.756 0.31168 69.756 69.598 69.91 0 22 14 2 0 0 0 8.7369 1 38940 38940 24.021 0 1 744680 8801 6496 6049 6172 10136 10136 -0.03671119444322812 ELIFPIRLI 9 Unmodified _ELIFPIRLI_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 MSMS AL20221201_MKP_PDAC_01 4 557.3546752929688 2 557.35516 1112.69577 NaN NaN NaN NaN NaN NaN NaN 102.93 1 96.752 96.252 97.252 -6.1757 0 0 0 0.82739 1 69045 69045 4.3292 0.73274 1 + 8802 21677 6050 6173 10137 10137 0.14392642821894697 ELIFQRIY 8 Unmodified _ELIFQRIY_ 0 0 0 REV__nc|ENSG00000231205|Q6ZT77|ZNF826P REV__nc|ENSG00000231205|Q6ZT77|ZNF826P MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.2723388671875 2 541.305667 1080.59678 0.78256 0.0004236 0.45816 0.00024801 1.2407 0.00067161 541.3057092375132 32.495 0.26252 28.639 28.533 28.796 -3.8562 18 13 2 0 0 0 8.7369 1 18614 18614 26.884 1.4843 1 6460300 + 8803 28027 6051 6174 10138 10138 0.059706198569983826 ELINFKSFF 9 Unmodified _ELINFKSFF_ 0 0 0 REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9 REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.28271484375 2 572.8055 1143.59645 1.2477 0.00071467 1.9767 0.0011322 3.2243 0.0018469 572.8068845809212 100.35 0.1247 94.173 94.103 94.228 -6.1757 12 7 2 0 0 0 0.19298 1 67061 67061 13.508 0.97634 1 30476000 + 8804 29806 6052 6175 10139 10139 0.030392001371410515 ELIPHPNTLF 10 Unmodified _ELIPHPNTLF_ 0 0 0 REV__nc|ENSG00000115970|Q6YHU6-2|THADA REV__nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.816650390625 2 590.821681 1179.62881 1.0258 0.00060606 -1.337 -0.00078993 -0.31122 -0.00018387 590.8209333925438 94.039 0.92574 87.863 87.555 88.481 -6.1757 164 53 4 0 0 0 0.35903 1 62493 62493 24.021 7.0783 1 342760000 + 8805 19017 6053 6176 10140 10140 0.046179875401321624 ELISLFNKE 9 Unmodified _ELISLFNKE_ 0 0 0 ENSG00000126947|ENST00000372829|ARMCX1 ENSG00000126947|ENST00000372829|ARMCX1 ENSG00000126947|ENST00000372829|ARMCX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8016967773438 2 546.800414 1091.58628 0.74147 0.00040544 -0.5748 -0.0003143 0.16667 9.1136E-05 546.8000037965985 80.935 1.0705 74.759 73.942 75.013 -6.1757 103 60 3 0 0 0 0.25681 1 52879 52879 19.257 1.1106 1 86841000 8806 3982 6054 6177 10141 10141 0.04414592411899321 ELIYYWYQ 8 Unmodified _ELIYYWYQ_ 0 0 0 REV__ENSG00000154227|ENST00000679737|CERS3 REV__ENSG00000154227|ENST00000679737|CERS3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.5388488769531 3 393.19033 1176.54916 1.1837 0.00046541 -0.10312 -4.0547E-05 1.0806 0.00042486 393.1902428293236 80.304 2.0794 74.129 72.437 74.516 -6.1757 150 121 2 0 0 0 8.7369 1 52860 52860 3.5965 0 1 21484000 + 8807 21215 6055 6178 10142 10142 -0.03205079133840627 ELKERRLREYE 11 Unmodified _ELKERRLREYE_ 0 0 0 REV__ENSG00000137494|ENST00000533342|ANKRD42 REV__ENSG00000137494|ENST00000533342|ANKRD42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.6108703613281 3 507.61084 1519.81069 0.38156 0.00019368 -0.20852 -0.00010585 0.17304 8.7837E-05 507.9449985656477 38.837 0.26302 38.849 38.718 38.981 0.011452 42 12 5 0 0 0 0.74046 1 20741 20741 0.45452 0.35968 1 22251000 + 8808 20244 6056 6179 10143 10143 0.07157675495091098 ELKFPLNRP 9 Unmodified _ELKFPLNRP_ 0 0 0 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.5379028320312 3 371.885353 1112.63423 0.47083 0.00017509 1.2108 0.00045028 1.6816 0.00062538 371.88605203000344 49.217 0.63942 48.845 48.519 49.159 -0.37172 39 31 2 0 0 0 0.21493 1 26277 26277 4.897 1.9018 1 5092700 + 8809 24511 6057 6180 10144 10144 0.08241711122627748 ELKGYNLL 8 Unmodified _ELKGYNLL_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20221201_MKP_PDAC_01 4 475.2702026367188 2 475.271293 948.528032 NaN NaN NaN NaN NaN NaN NaN 94.746 1 88.57 88.07 89.07 -6.1757 0 0 0 0.93587 1 62760 62760 13.508 0.97634 1 8810 6592 6058 6181 10145 10145 0.051709555572983845 ELKKKLKEK 9 Unmodified _ELKKKLKEK_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3735961914062 2 572.376623 1142.73869 NaN NaN NaN NaN NaN NaN NaN 104.19 1 104.14 103.64 104.64 -0.048737 0 0 0 0.85852 1 57849 57849 0.45834 0 1 8811 410 6059 6182 10146 10146 0.17303412879300595 ELKKLKTL 8 Unmodified _ELKKLKTL_ 0 0 0 nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000491074.5_1_2:183605037-183619453:+|nuORF;ENST00000418559.5_1_2:183605037-183617329:+|nuORF nc|ENSG00000077232|Q8IXB1-2|DNAJC10 nc|ENSG00000077232|Q8IXB1-2|DNAJC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.8258056640625 2 486.826235 971.637917 1.5832 0.00077074 0.019631 9.557E-06 1.6028 0.0007803 486.8261271111984 105.23 0.20614 99.053 98.949 99.156 -6.1757 153 46 4 0 0 0 0.80722 1 70423 70423 2.3027 0 1 1741599999.9999998 8812 1208 6060 6183 10147 10147 0.1509638089648888 ELKLKKLGYK 10 Unmodified _ELKLKKLGYK_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.3911743164062 2 610.392273 1218.76999 -0.41827 -0.00025531 0.32825 0.00020036 -0.090018 -5.4946E-05 610.3924218310536 105.06 0.050652 105.01 104.98 105.03 -0.048737 35 17 3 0 0 0 0.72292 1 58304 58304 0.35063 0.043601 1 4495000 + 8813 22858 6061 6184 10148 10148 0.16935985913414697 ELKLKKLGYK 10 Unmodified _ELKLKKLGYK_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 610.392273 1218.76999 -0.41827 -0.00025531 0.32825 0.00020036 -0.090018 -5.4946E-05 610.3924218310536 105.06 0.050652 105.01 104.98 105.03 -0.048737 0 0 NaN 0.35063 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4495000 + 8814 22858 6061 6184 0.16935985913414697 ELKLTFADNP 10 Unmodified _ELKLTFADNP_ 0 0 0 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 MSMS AL20221201_MKP_PDAC_01 4 383.2064208984375 3 383.20464 1146.59209 NaN NaN NaN NaN NaN NaN NaN 89.384 1 83.208 82.708 83.708 -6.1757 0 0 0 0.81803 1 59002 59002 11.518 3.0736 1 + 8815 20046 6062 6185 10149 10149 0.024656909235773128 ELKMWTGAF 9 Unmodified _ELKMWTGAF_ 0 0 0 REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.286865234375 2 541.770603 1081.52665 0.44712 0.00024224 -1.8791 -0.001018 -1.432 -0.00077579 541.769123201349 51.6 0.16793 51.6 51.454 51.622 0 11 7 2 0 0 0 0.18118 1 28467 28467 18.135 8.7875 1 7439500 + 8816 25822 6063 6186 10150 10150 -0.010850018031305808 ELKNETEEKRQ 11 Unmodified _ELKNETEEKRQ_ 0 0 0 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.9097290039062 3 468.575684 1402.70522 -0.0020217 -9.4731E-07 -0.065778 -3.0822E-05 -0.0678 -3.1769E-05 468.5755732020661 17.219 0.1089 17.224 17.16 17.269 0.0050564 13 7 2 0 0 0 0.69708 1 8672 8672 2.084 0 1 1138700 + 8817 24098 6064 6187 10151 10151 0.019977145788061534 ELKQNLSRS 9 Unmodified _ELKQNLSRS_ 0 0 0 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8694458007812 3 358.86825 1073.58292 1.3548 0.00048618 1.045 0.00037503 2.3998 0.00086121 358.86875103272496 22.324 0.35949 19.589 19.374 19.733 -2.7348 32 18 2 0 0 0 0.46501 1 11963 11963 6.1918 0 1 3909900 8818 1919;16089 6065 6188 10152 10152 0.04907342357910238 ELKRLEEV 8 Unmodified _ELKRLEEV_ 0 0 0 REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.293212890625 2 508.292756 1014.57096 0.74269 0.0003775 -0.98342 -0.00049987 -0.24073 -0.00012236 508.2922388902759 43.044 0.33286 43.044 42.889 43.222 0 49 16 4 0 0 0 0.19688 1 23301 23301 71.134 2.0287 1 64794000 + 8819 28004 6066 6189 10153 10153 0.06425725614724342 ELKRLEEV 8 Unmodified _ELKRLEEV_ 0 0 0 REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF REV__ENST00000499988.2_1_15:40986710-40986842:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.292724609375 2 508.292756 1014.57096 0.5244 0.00026655 0.1006 5.1133E-05 0.62499 0.00031768 508.2927222070533 49.112 0.42819 43.716 43.424 43.853 -5.3961 52 28 2 0 0 0 0.1875 1 30642 30642 74.929 13.572 1 70099000 + 8820 28004 6066 6189 10154 10154 0.06425725614724342 ELLAFLTSSGA 11 Unmodified _ELLAFLTSSGA_ 0 0 0 ENST00000528167.1_1_4:8442537-8448315:+|nuORF;ENSG00000155275|ENST00000389737|TRMT44 ENST00000528167.1_1_4:8442537-8448315:+|nuORF ENST00000528167.1_1_4:8442537-8448315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7988891601562 2 554.797872 1107.58119 0.099144 5.5005E-05 -0.28609 -0.00015872 -0.18694 -0.00010372 554.7975984147109 56.24 0.62835 56.24 56.007 56.635 0 106 28 5 0 0 0 0.37677 1 31408 31408 22.736 8.8302 1 684650000 8821 6379 6067 6190 10155 10155 0.0317028854929049 ELLAQMSG 8 Unmodified _ELLAQMSG_ 0 0 0 ENSG00000112992|ENST00000344920|NNT;ENST00000513390.1_1_5:43651911-43653344:+|nuORF ENSG00000112992|ENST00000344920|NNT ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7120361328125 2 424.712753 847.410954 -0.46542 -0.00019767 -0.73087 -0.00031041 -1.1963 -0.00050808 424.7125473451999 33.533 0.82154 33.533 33.203 34.025 0 124 55 3 0 0 0 0.48669 1 17563 17563 36.044 9.7029 1 51896000 8822 2936 6068 6191 10156 10156 -0.0188552565396094 ELLDKYFDK 9 Unmodified _ELLDKYFDK_ 0 0 0 REV__ENSG00000086288|ENST00000199447|NME8 REV__ENSG00000086288|ENST00000199447|NME8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8062744140625 2 585.805697 1169.59684 0.36124 0.00021162 0.0053964 3.1613E-06 0.36664 0.00021478 585.8057372204669 55.561 0.28683 55.083 54.926 55.213 -0.47798 34 13 3 0 0 0 0.36964 1 30113 30113 13.906 1.6654 1 4765500 + 8823 17767 6069 6192 10157 10157 0.01882575066338177 ELLEEACRQ 9 Unmodified _ELLEEACRQ_ 0 0 0 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3 nc|ENSG00000177380|O75145-2|PPFIA3 nc|ENSG00000177380|O75145-2|PPFIA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1778869628906 3 364.178096 1089.51246 -0.63031 -0.00022955 1.0765 0.00039202 0.44614 0.00016247 364.1784254338771 34.317 0.19538 34.317 34.226 34.422 0 17 9 2 0 0 0 0.5029 1 18089 18089 4.5289 0.93237 1 2529600 8824 8677 6070 6193 10158 10158 -0.028716990220800653 ELLEQQKTY 9 Unmodified _ELLEQQKTY_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3004760742188 2 576.300778 1150.587 0.36524 0.00021049 0.67222 0.0003874 1.0375 0.00059789 576.3010616915888 50.32 0.22398 50.32 50.209 50.433 0 15 9 2 0 0 0 0.39863 1 27746 27746 12.532 0 1 2639600 8825 763;12747 6071 6194 10159 10159 0.017733870609617952 ELLHLVPVE 9 Unmodified _ELLHLVPVE_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8057250976562 2 524.8055 1047.59645 0.22791 0.00011961 0.10011 5.254E-05 0.32802 0.00017215 524.8055940949637 85.288 1.622 79.113 78.172 79.794 -6.1757 193 96 3 0 0 0 0.095405 1 55868 55868 34.102 0 1 78829000 8826 3541 6072 6195 10160 10160 0.07455200137133033 ELLKEIQAM 9 Oxidation (M) _ELLKEIQAM(Oxidation (M))_ ELLKEIQAM(1) ELLKEIQAM(66) 0 0 1 nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000172939|ENST00000311806|OXSR1;ENSG00000198648|ENST00000355999|STK39 nc|ENSG00000198648|Q9UEW8-2|STK39 nc|ENSG00000198648|Q9UEW8-2|STK39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7935180664062 2 545.794275 1089.574 -0.0078629 -4.2915E-06 -1.3067 -0.00071318 -1.3145 -0.00071747 545.7941120952486 40.437 0.32928 40.437 40.236 40.565 0 45 16 3 0 0 0 0.017075 1 21680 21680 66.457 22.05 1 17725000 8827 8272 6073 6196 10161 10161 1396 0.03279232677186883 ELLKEIQAM 9 Unmodified _ELLKEIQAM_ 0 0 0 nc|ENSG00000198648|Q9UEW8-2|STK39;ENSG00000172939|ENST00000311806|OXSR1;ENSG00000198648|ENST00000355999|STK39 nc|ENSG00000198648|Q9UEW8-2|STK39 nc|ENSG00000198648|Q9UEW8-2|STK39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7978515625 2 537.796817 1073.57908 1.1238 0.0006044 -0.28047 -0.00015084 0.84337 0.00045356 537.796381916032 62.997 0.39466 56.822 56.586 56.98 -6.1757 33 20 2 0 0 0 0.023481 1 40609 40609 60.074 20.124 1 28371000 8828 8272 6073 6197 10162 10162 0.04523536539818451 ELLKSHEI 8 Unmodified _ELLKSHEI_ 0 0 0 REV__ENSG00000162972|ENST00000392290|MAIP1 REV__ENSG00000162972|ENST00000392290|MAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7749938964844 2 484.7742 967.533846 1.4989 0.00072662 -0.006859 -3.3251E-06 1.492 0.0007233 484.7739918885202 50.304 0.20398 50.255 50.148 50.352 -0.048824 15 9 2 0 0 0 0.80383 1 27212 27212 4.3292 0 1 1269400 + 8829 21713 6074 6198 10163 10163 0.04878054068944948 ELLLEHFSGL 10 Unmodified _ELLLEHFSGL_ 0 0 0 REV__PPP6R3-LRP5|1|fusion REV__PPP6R3-LRP5|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.315185546875 2 579.313689 1156.61282 2.4041 0.0013928 -0.85301 -0.00049416 1.5511 0.0008986 579.3130118565363 94.863 0.41821 94.878 94.594 95.012 0.014244 27 15 2 0 0 0 0.46514 1 52667 52667 18.146 0 1 3255700 + 8830 30078 6075 6199 10164 10164 0.04078281303259246 ELLNWLLAY 9 Unmodified _ELLNWLLAY_ 0 0 0 REV__ENSG00000050555|ENST00000361069|LAMC3 REV__ENSG00000050555|ENST00000361069|LAMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2977905273438 2 567.813325 1133.6121 0.47066 0.00026725 -2.1055 -0.0011955 -1.6349 -0.00092829 567.8123081667011 68.066 0.29446 68.066 67.971 68.266 0 36 14 4 0 0 0 0.54444 1 37903 37903 4.756 0.42677 1 3071000 + 8831 17261 6076 6200 10165 10165 0.050634866541713563 ELLPSRFREFL 11 Unmodified _ELLPSRFREFL_ 0 0 0 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 ENSG00000179058|ENST00000372478|C9orf50 MSMS AL20221201_MKP_PDAC_01 4 469.5975646972656 3 469.597871 1405.77178 NaN NaN NaN NaN NaN NaN NaN 86.883 1 80.707 80.207 81.207 -6.1757 0 0 0 0.92174 1 57278 57278 6.2344 0 1 8832 8806 6077 6201 10166 10166 0.08512994931356843 ELLSAMMRL 9 Unmodified _ELLSAMMRL_ 0 0 0 nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000087258|ENST00000262493|GNAO1 nc|ENSG00000087258|P09471-2|GNAO1 nc|ENSG00000087258|P09471-2|GNAO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7276000976562 2 532.285563 1062.55657 0.10974 5.8413E-05 0.64871 0.0003453 0.75845 0.00040371 532.285579359805 66.396 0.18839 65.913 65.88 66.068 -0.48323 14 8 2 0 0 0 0.18521 1 36262 36262 11.64 4.3511 1 1306800 8833 16062 6078 6202 10167 10167 0.027796138705525664 ELLSDVAYF 9 Unmodified _ELLSDVAYF_ 0 0 0 ENSG00000157911|ENST00000447513|PEX10;nc|ENSG00000157911|O60683-2|PEX10 ENSG00000157911|ENST00000447513|PEX10 ENSG00000157911|ENST00000447513|PEX10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8478698730469 3 352.846452 1055.51753 1.8989 0.00067001 -0.66394 -0.00023427 1.2349 0.00043575 352.84609753995863 21.335 0.89268 18.6 18.297 19.19 -2.7348 225 63 5 0 0 0 0.49272 1 11589 11589 4.897 0 1 1204100000 8834 6550 6079 6203 10168 10168 -0.008010718878267653 ELLSILFSEDM 11 Unmodified _ELLSILFSEDM_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8847961425781 3 432.884578 1295.63191 NaN NaN NaN NaN NaN NaN NaN 76.552 1 76.072 75.572 76.572 -0.47945 0 0 0 0.84805 1 41908 41908 9.7643 0.788 1 + 8835 21892 6080 6204 10169 10169 -0.004085501880354059 ELLSPFQLY 9 Unmodified _ELLSPFQLY_ 0 0 0 ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3;ENST00000290730.11_1_22:24179058-24180975:-|nuORF ENST00000464110.1_1_22:24179249-24180975:-|nuORF ENST00000464110.1_1_22:24179249-24180975:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2985229492188 2 555.297507 1108.58046 1.122 0.00062305 0.70885 0.00039362 1.8309 0.0010167 555.8008089356906 99.426 0.24415 93.25 93.097 93.341 -6.1757 36 15 4 0 0 0 0.12841 1 66119 66119 30.225 0 1 116570000 8836 1728 6081 6205 10170 10170 0.030514939002614483 ELLTKHSF 8 Unmodified _ELLTKHSF_ 0 0 0 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.2462768554688 2 487.768917 973.523281 0.32538 0.00015871 1.0096 0.00049245 1.335 0.00065117 487.7689406121794 56.24 0.37582 50.263 50.052 50.428 -5.9769 36 21 2 0 0 0 8.7369 1 35766 35766 7.9102 0 1 28042000 + 8837 23219 6082 6206 10171 10171 0.03546071414530161 ELLVKESSGGP 11 Unmodified _ELLVKESSGGP_ 0 0 0 ENSG00000167618|ENST00000301202|LAIR2;nc|ENSG00000167613|Q6GTX8-4|LAIR1;ENSG00000167613|ENST00000391742|LAIR1 ENSG00000167618|ENST00000301202|LAIR2 ENSG00000167618|ENST00000301202|LAIR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.304443359375 2 558.300778 1114.587 1.7125 0.00095606 1.8661 0.0010418 3.5786 0.0019979 558.3015585631283 103.31 0.03862 97.134 97.112 97.15 -6.1757 19 11 2 0 0 0 0.6889 1 69278 69278 5.2969 0.066215 1 6821900 8838 7638 6083 6207 10172 10172 0.03429387060964473 ELLVSPHVGL 10 Unmodified _ELLVSPHVGL_ 0 0 0 REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3101196289062 2 532.310949 1062.60735 NaN NaN NaN NaN NaN NaN NaN 76.605 1 76.126 75.626 76.626 -0.47945 0 0 0 0.19054 1 41941 41941 43.858 1.7637 1 + 8839 22800 6084 6208 10173 10173 0.0785460251142922 ELLWWWGM 8 Unmodified _ELLWWWGM_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.225830078125 3 374.181001 1119.52117 0.40036 0.00014981 -2.1701 -0.000812 -1.7697 -0.00066219 374.1803179463452 38.601 0.18876 38.601 38.515 38.703 0 10 8 2 0 0 0 8.7369 1 20583 20583 1.6526 1.6526 1 490490 8840 4555 6085 6209 10174 10174 -0.03380680594932528 ELLYKEIEI 9 Unmodified _ELLYKEIEI_ 0 0 0 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3240966796875 2 575.323722 1148.63289 0.57417 0.00033033 0.39592 0.00022778 0.97008 0.00055811 575.3240096631665 70.955 0.3277 70.477 70.308 70.636 -0.47736 35 14 3 0 0 0 0.047788 1 38801 38801 45.7 1.9272 1 7431600 8841 6446 6086 6210 10175 10175 0.0645203224321449 ELLYKEIEI 9 Unmodified _ELLYKEIEI_ 0 0 0 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 575.323722 1148.63289 0.15602 8.9759E-05 1.5185 0.00087364 1.6745 0.0009634 575.3245343965588 70.496 0.3037 70.496 70.333 70.637 0 0.0096059 0.00056915 NaN 45.7 41 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6349800 8842 6446 6086 6210 0.0645203224321449 ELMAKDLHF 9 Unmodified _ELMAKDLHF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5223388671875 3 368.523315 1102.54812 NaN NaN NaN NaN NaN NaN NaN 50.732 1 50.732 50.232 51.232 0 0 0 0 0.46757 1 27980 27980 11.495 2.5185 1 8843 3827 6087 6211 10176 10176 0.0009438322556434287 ELMAKDLHF 9 Unmodified _ELMAKDLHF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5225524902344 3 368.523315 1102.54812 -0.091553 -3.3739E-05 -3.3204 -0.0012236 -3.4119 -0.0012574 368.52221904918684 51.316 0.19023 50.903 50.778 50.969 -0.41351 17 9 3 0 0 0 0.41742 1 27633 27633 7.609 1.8255 1 3176800 8844 3827 6087 6211 10177 10177 0.0009438322556434287 ELMAKDLHF 9 Unmodified _ELMAKDLHF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 368.523315 1102.54812 0.25975 9.5723E-05 -2.9106 -0.0010726 -2.6508 -0.0009769 368.5223012606826 50.695 0.10152 50.695 50.622 50.724 0 -0.104 5.7787E-05 NaN 7.609 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2239200 8845 3827 6087 6211 0.0009438322556434287 ELMAVTGRGSF 11 Unmodified _ELMAVTGRGSF_ 0 0 0 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8663024902344 3 389.865741 1166.57539 0.36046 0.00014053 0.89492 0.0003489 1.2554 0.00048943 389.86599792916877 53.104 0.26644 52.653 52.496 52.762 -0.45173 35 13 3 0 0 0 0.46578 1 28681 28681 14.218 0 1 6751400 + 8846 22223 6088 6212 10178 10178 -0.001231332340012159 ELMDYTYYAVW 11 Unmodified _ELMDYTYYAVW_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2162475585938 3 485.216328 1452.62715 0.94593 0.00045898 -0.77481 -0.00037595 0.17112 8.303E-05 485.21598820414465 50.013 0.22096 49.621 49.532 49.753 -0.3923 26 10 3 0 0 0 0.73992 1 26925 26925 0.50596 0 1 3838200 8847 6148 6089 6213 10179 10179 -0.08105434330809658 ELMKLKKKLV 10 Unmodified _ELMKLKKKLV_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-4|NIN REV__nc|ENSG00000100503|Q8N4C6-4|NIN MSMS AL20221201_MKP_PDAC_01 4 615.4056396484375 2 615.404327 1228.7941 NaN NaN NaN NaN NaN NaN NaN 105.91 1 99.731 99.231 100.23 -6.1757 0 0 0 1.0029 1 70927 70927 0.35063 0.35063 1 + 8848 18075 6090 6214 10180 10180 0.1888550307544392 ELMKLSPEEL 10 Unmodified _ELMKLSPEEL_ 0 0 0 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3;ENSG00000120756|ENST00000457734|PLS1 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000120756|ENST00000457734|PLS1 nc|ENSG00000102024|P13797-2|PLS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8772583007812 3 396.877535 1187.61078 0.31893 0.00012658 -0.74791 -0.00029683 -0.42898 -0.00017025 396.87725849065913 3.6428 0.16409 1.1609 1.0495 1.2136 -2.482 108 69 2 0 0 0 0.68074 1 1867 1867 5.0475 5.0475 1 5160700 8849 2010;3539 6091 6215 10181 10181 0.024474845031363657 ELMQMLRFL 9 Unmodified _ELMQMLRFL_ 0 0 0 MRPS33|p.T64M|1|0.17|ENSG00000090263|chr7:141010443-141010443|G/A|missense_variant MRPS33|p.T64M|1|0.17|ENSG00000090263|chr7:141010443-141010443|G/A|missense_variant MRPS33|p.T64M|1|0.17|ENSG00000090263|chr7:141010443-141010443|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8146362304688 2 590.814487 1179.61442 0.50162 0.00029637 0.394 0.00023278 0.89562 0.00052915 590.8147844234192 85.429 0.41077 84.927 84.732 85.143 -0.5015 111 39 4 0 0 0 0.2001 1 46678 46678 23.148 6.2061 1 18710000 8850 15998 6092 6216 10182 10182 0.03179875796013221 ELMRDIYSM 9 2 Oxidation (M) _ELM(Oxidation (M))RDIYSM(Oxidation (M))_ ELM(1)RDIYSM(1) ELM(73)RDIYSM(73) 0 0 2 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.26416015625 2 595.265024 1188.5155 -0.61411 -0.00036556 -0.80839 -0.00048121 -1.4225 -0.00084677 595.2649569276842 28.704 0.33385 28.704 28.467 28.801 0 29 16 4 0 0 0 0.012668 1 14837 14837 72.968 36.841 1 3632900 8851 10598 6093 6217 10183 10183 1701;1702 -0.07122191959570046 ELMRDIYSM 9 2 Oxidation (M) _ELM(Oxidation (M))RDIYSM(Oxidation (M))_ ELM(1)RDIYSM(1) ELM(73)RDIYSM(73) 0 0 2 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2645874023438 2 595.265024 1188.5155 NaN NaN NaN NaN NaN NaN NaN 28.525 1 28.525 28.025 29.025 0 0 0 0 0.024473 1 14740 14740 72.968 34.792 1 8852 10598 6093 6217 10184 10184 1701;1702 -0.07122191959570046 ELMSPLAP 8 Unmodified _ELMSPLAP_ 0 0 0 CON__Q3T052 CON__Q3T052 CON__Q3T052 MULTI-MSMS AL20221201_MKP_PDAC_01 4 857.4450073242188 1 857.443717 856.43644 1.3277 0.0011384 -0.68491 -0.00058727 0.6428 0.00055116 857.4435474552128 79.413 0.32934 73.238 73.04 73.37 -6.1757 31 18 2 0 0 0 0.46494 1 51933 51933 38.151 6.0342 1 13259000 + 8853 203 6094 6218 10185 10185 0.002479488684457465 ELNDRSEDL 9 Unmodified _ELNDRSEDL_ 0 0 0 ENSG00000143603|ENST00000271915|KCNN3;nc|ENSG00000143603|Q9UGI6-3|KCNN3;nc|ENSG00000143603|Q9UGI6-2|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7533569335938 2 545.754192 1089.49383 0.50464 0.00027541 -1.5257 -0.00083265 -1.021 -0.00055724 545.753176035648 77.499 0.40135 71.323 71.117 71.518 -6.1757 28 22 2 0 0 0 0.34999 1 50651 50651 14.838 4.6549 1 11071000 8854 5532 6095 6219 10186 10186 -0.04733537392280596 ELNEEIYF 8 Unmodified _ELNEEIYF_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.749267578125 2 528.747847 1055.48114 0.60498 0.00031988 3.5007 0.001851 4.1056 0.0021708 528.7480449107959 73.197 0.48417 72.721 72.429 72.913 -0.47588 49 21 4 0 0 0 0.76266 1 40017 40017 11.64 0.81637 1 2302700 8855 1240 6096 6220 10187 10187 -0.04437948784516266 ELNEINQF 8 Unmodified _ELNEINQF_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000515429.1_1_3:128598503-128612413:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7460021972656 2 503.745639 1005.47673 0.095205 4.7959E-05 1.3854 0.00069789 1.4806 0.00074585 503.74567199920995 82.911 0.41813 82.413 82.224 82.642 -0.49751 46 17 3 0 0 0 0.75262 2 45343 45343;45451 12.532 5.2423 1 3861200 8856 8697 6097 6221 10188;10189 10188 -0.025794132074224763 ELNEINQF 8 Unmodified _ELNEINQF_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000515429.1_1_3:128598503-128612413:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 503.745639 1005.47673 0.48338 0.0002435 0.98541 0.0004964 1.4688 0.0007399 503.74650963533423 82.437 0.37209 82.437 82.188 82.56 0 0.011723 -0.00016053 NaN 12.532 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 831880 8857 8697 6097 6221 -0.025794132074224763 ELNERTIF 8 Unmodified _ELNERTIF_ 0 0 0 REV__ENSG00000125901|ENST00000380325|MRPS26 REV__ENSG00000125901|ENST00000380325|MRPS26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2673034667969 2 511.269281 1020.52401 0.76092 0.00038903 -1.9955 -0.0010202 -1.2345 -0.00063118 511.2682273699588 38.141 0.51124 33.772 33.581 34.092 -4.3689 48 30 2 0 0 0 0.60622 1 22377 22377 25.399 4.9457 1 33396000 + 8858 19527 6098 6222 10190 10190 0.014568660635859487 ELNGANNG 8 Unmodified _ELNGANNG_ 0 0 0 REV__nc|ENSG00000176236|Q8N326|RPP38-DT REV__nc|ENSG00000176236|Q8N326|RPP38-DT MSMS AL20221201_MKP_PDAC_01 4 394.6790161132812 2 394.680299 787.346045 NaN NaN NaN NaN NaN NaN NaN 63.346 1 57.17 56.67 57.67 -6.1757 0 0 0 0.97444 1 40940 40940 2.3027 1.5091 1 + 8859 29800 6099 6223 10191 10191 -0.05613384135608612 ELNGRPMQL 9 Unmodified _ELNGRPMQL_ 0 0 0 REV__ENSG00000070061|ENST00000374647|ELP1 REV__ENSG00000070061|ENST00000374647|ELP1 MSMS AL20221201_MKP_PDAC_01 4 529.276123046875 2 529.276583 1056.53861 NaN NaN NaN NaN NaN NaN NaN 46.832 1 41.752 41.252 42.252 -5.0805 0 0 0 0.19623 1 28997 28997 31.268 0.5649 1 + 8860 17463 6100 6224 10192 10192 0.012606149400653521 ELNILDIY 8 Unmodified _ELNILDIY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.5359497070312 1 992.529889 991.522613 0.38096 0.00037811 -0.13611 -0.00013509 0.24485 0.00024302 992.5292371578277 57.415 0.2303 56.925 56.773 57.003 -0.48974 23 10 3 0 0 0 0.80068 1 31184 31184 6.2058 1.8765 1 2451500 + 8861 24338 6101 6225 10193 10193 0.026512319748121627 ELNILDIY 8 Unmodified _ELNILDIY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7681884765625 2 496.768583 991.522613 0.49762 0.0002472 -0.21194 -0.00010528 0.28568 0.00014192 496.76847113949776 57.374 0.35627 56.884 56.69 57.046 -0.48974 43 16 3 0 0 0 0.58902 1 31256 31256 26.884 5.137 1 10492000 + 8862 24338 6101 6225 10194 10194 0.026512319748121627 ELNKLLEEI 9 Unmodified _ELNKLLEEI_ 0 0 0 nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;ENST00000540597.5_1_19:55501708-55512263:+|nuORF nc|ENSG00000022556|Q9NX02-4|NLRP2 nc|ENSG00000022556|Q9NX02-4|NLRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.8137817382812 2 550.813522 1099.61249 0.15297 8.4256E-05 -0.32956 -0.00018153 -0.17659 -9.727E-05 550.81332586498 71.735 0.29204 71.735 71.548 71.84 0 34 12 3 0 0 0 0.091924 2 39906 39906;40007 34.932 9.9411 1 4047100 8863 534 6102 6226 10195;10196 10195 0.06666861583403261 ELNKLLEEI 9 Unmodified _ELNKLLEEI_ 0 0 0 nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;ENST00000540597.5_1_19:55501708-55512263:+|nuORF nc|ENSG00000022556|Q9NX02-4|NLRP2 nc|ENSG00000022556|Q9NX02-4|NLRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8140258789062 2 550.813522 1099.61249 1.1253 0.00061984 0.71837 0.00039569 1.8437 0.0010155 550.8141328492106 94.089 0.52063 87.914 87.684 88.204 -6.1757 38 29 2 0 0 0 0.040683 1 62273 62273 49.554 3.8547 1 14712000 8864 534 6102 6226 10197 10197 0.06666861583403261 ELNLPLPN 8 Unmodified _ELNLPLPN_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2549743652344 2 455.255643 908.496732 NaN NaN NaN NaN NaN NaN NaN 58.637 1 58.637 58.137 59.137 0 0 0 0 0.80403 1 32651 32651 23.148 5.0134 1 + 8865 24247 6103 6227 10198 10198 0.038823825231816045 ELNNHHWGL 9 Unmodified _ELNNHHWGL_ 0 0 0 REV__ENSG00000115020|ENST00000264380|PIKFYVE REV__ENSG00000115020|ENST00000264380|PIKFYVE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.252197265625 2 560.270147 1118.52574 0.51498 0.00028853 0.56339 0.00031565 1.0784 0.00060418 560.2712883449864 68.352 0.4269 68.352 68.099 68.526 0 28 19 2 0 0 0 0.55775 1 37986 37986 3.9444 0.3479 1 1521100 + 8866 18948 6104 6228 10199 10199 -0.028780801278116996 ELNNYSLDL 9 Unmodified _ELNNYSLDL_ 0 0 0 REV__ENSG00000165379|ENST00000298119|LRFN5 REV__ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7646484375 2 540.764029 1079.5135 0.23356 0.0001263 -0.16469 -8.906E-05 0.068864 3.7239E-05 540.7640784056363 76.331 0.29082 76.331 76.2 76.491 0 26 11 3 0 0 0 0.32871 1 42434 42434 15.847 3.3156 1 1097300 + 8867 22007 6105 6229 10200 10200 -0.023071613815318415 ELNNYSLDL 9 Unmodified _ELNNYSLDL_ 0 0 0 REV__ENSG00000165379|ENST00000298119|LRFN5 REV__ENSG00000165379|ENST00000298119|LRFN5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.764029 1079.5135 0.23356 0.0001263 -0.16469 -8.906E-05 0.068864 3.7239E-05 540.7640784056363 76.331 0.29082 76.331 76.2 76.491 0 0 0 NaN 15.847 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1097300 + 8868 22007 6105 6229 -0.023071613815318415 ELNRVKRTLRY 11 Unmodified _ELNRVKRTLRY_ 0 0 0 REV__ENST00000537878.5_1_12:16500588-16507345:+|nuORF REV__ENST00000537878.5_1_12:16500588-16507345:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.7185974121094 4 362.717759 1446.84193 0.82824 0.00030042 1.2536 0.00045471 2.0819 0.00075513 362.71816378111504 14.814 0.17267 12.286 12.221 12.394 -2.5273 94 31 4 0 0 0 0.73992 1 7554 7554 0.50596 0.50596 1 11857000 + 8869 28553 6106 6230 10201 10201 0.1363829331985471 ELPEEKNQW 9 Unmodified _ELPEEKNQW_ 0 0 0 ENST00000455503.1_1_1:151319457-151320161:+|nuORF ENST00000455503.1_1_1:151319457-151320161:+|nuORF ENST00000455503.1_1_1:151319457-151320161:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7835083007812 2 586.782753 1171.55095 NaN NaN NaN NaN NaN NaN NaN 95.169 1 94.801 94.301 95.301 -0.36814 0 0 0 0.81228 1 51985 51985 5.7319 0.43497 1 8870 13587 6107 6231 10202 10202 -0.0279607011589178 ELPEKWNNIKK 11 Unmodified _ELPEKWNNIKK_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.4486694335938 4 350.448951 1397.7667 0.87244 0.00030575 -1.7766 -0.00062262 -0.90419 -0.00031687 350.44829061005413 14.934 0.085405 12.407 12.343 12.428 -2.5273 20 15 2 0 0 0 0.72131 1 7621 7621 2.2527 0.32522 1 1451900 8871 358 6108 6232 10203 10203 0.08372691068734639 ELPENLKALF 10 Unmodified _ELPENLKALF_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;ENSG00000105877|ENST00000409508|DNAH11 ENSG00000187775|ENST00000389840|DNAH17;ENSG00000105877|ENST00000409508|DNAH11 ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20221201_MKP_PDAC_01 4 587.3269653320312 2 587.329339 1172.64412 NaN NaN NaN NaN NaN NaN NaN 100.12 1 93.941 93.441 94.441 -6.1757 0 0 0 0.83398 1 66879 66879 10.824 0.75 1 8872 9593;2375 6109 6233 10204 10204 0.06470854337317178 ELPEPEKVF 9 Unmodified _ELPEPEKVF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2864990234375 2 544.28714 1086.55973 NaN NaN NaN NaN NaN NaN NaN 48.604 1 48.56 48.06 49.06 -0.04369 0 0 0 0.82739 1 26229 26229 4.3292 0 1 + 8873 21279 6110 6234 10205 10205 0.019909035205728287 ELPEPLLTF 9 Unmodified _ELPEPLLTF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7908935546875 2 529.792058 1057.56956 0.2984 0.00015809 -0.061557 -3.2613E-05 0.23685 0.00012548 529.7915330250069 96.65 0.22385 96.345 96.209 96.433 -0.30472 21 12 2 0 0 0 0.54444 1 52758 52758 4.756 2.1785 1 355530 8874 8498 6111 6235 10206 10206 0.04308091525945201 ELPEPVIPY 9 Unmodified _ELPEPVIPY_ 0 0 0 nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-4|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7852783203125 2 528.784233 1055.55391 NaN NaN NaN NaN NaN NaN NaN 68.249 1 68.249 67.749 68.749 0 0 0 0 0.7453 1 38049 38049 7.9102 2.6795 1 8875 5075 6112 6236 10207 10207 0.028358050089309472 ELPEPVIPY 9 Unmodified _ELPEPVIPY_ 0 0 0 nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24;nc|ENSG00000138639|Q8N264-4|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7847900390625 2 528.784233 1055.55391 NaN NaN NaN NaN NaN NaN NaN 68.514 1 68.514 68.014 69.014 0 0 0 0 0.76439 1 38190 38190 7.2892 1.5288 1 8876 5075 6112 6236 10208 10208 0.028358050089309472 ELPEQFFQL 9 Unmodified _ELPEQFFQL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7941284179688 2 575.792589 1149.57063 NaN NaN NaN NaN NaN NaN NaN 94.638 1 94.652 94.152 95.152 0.014244 0 0 0 0.36554 1 52590 52590 21.747 4.8044 1 8877 4921 6113 6237 10209 10209 0.0018230589485028759 ELPEQFFQL 9 Unmodified _ELPEQFFQL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7935791015625 2 575.792589 1149.57063 1.2124 0.00069807 1.4394 0.00082879 2.6518 0.0015269 575.7935549609649 100.04 0.28742 93.862 93.727 94.014 -6.1757 34 18 2 0 0 0 0.06294 1 66885 66885 41.84 13.353 1 171240000 8878 4921 6113 6237 10210 10210 0.0018230589485028759 ELPFQALEF 9 Unmodified _ELPFQALEF_ 0 0 0 nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 nc|ENSG00000156414|Q8NDG6-2|TDRD9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.25244140625 2 547.281857 1092.54916 1.3562 0.0007422 -3.4005 -0.001861 -2.0443 -0.0011188 547.2797925671128 64.046 0.28419 57.871 57.752 58.036 -6.1757 22 14 2 0 0 0 0.16895 1 41538 41538 18.146 3.3081 1 14477000 8879 6452 6114 6238 10211 10211 0.006589208661580415 ELPKHYFSF 9 Unmodified _ELPKHYFSF_ 0 0 0 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2005310058594 3 389.865958 1166.57605 0.52225 0.00020361 -0.11095 -4.3256E-05 0.4113 0.00016035 389.8658497431899 52.749 0.30361 52.686 52.522 52.826 -0.063419 37 14 3 0 0 0 0.41742 1 28553 28553 7.609 0 1 18069000 8880 10016 6115 6239 10212 10212 -0.0005797052267553227 ELPKHYFSF 9 Unmodified _ELPKHYFSF_ 0 0 0 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.293701171875 2 584.295299 1166.57605 0.98732 0.00057689 -1.2576 -0.00073482 -0.27029 -0.00015793 584.2942483870917 52.755 0.21938 52.692 52.563 52.782 -0.063423 18 10 2 0 0 0 0.039985 1 28563 28563 49.933 24.534 1 5619900 8881 10016 6115 6239 10213 10213 -0.0005797052267553227 ELPKHYFSF 9 Unmodified _ELPKHYFSF_ 0 0 0 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.214599609375 3 389.865958 1166.57605 0.46023 0.00017943 0.18478 7.204E-05 0.64501 0.00025147 389.8660789256971 58.023 0.30717 51.996 51.905 52.212 -6.0275 23 16 2 0 0 0 0.18882 1 37272 37272 7.1017 0 1 23951000 8882 10016 6115 6239 10214 10214 -0.0005797052267553227 ELPKHYFSF 9 Unmodified _ELPKHYFSF_ 0 0 0 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.295299 1166.57605 0.25446 0.00014868 -1.4894 -0.00087022 -1.2349 -0.00072154 584.2941424430245 53.106 0.10817 52.655 52.574 52.682 -0.45173 -0.018523 -0.00025239 NaN 49.933 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2249900 8883 10016 6115 6239 -0.0005797052267553227 ELPKLGAF 8 Unmodified _ELPKLGAF_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MSMS AL20221201_MKP_PDAC_01 4 438.0075073242188 2 437.755278 873.496004 NaN NaN NaN NaN NaN NaN NaN 19.699 1 17.042 16.542 17.542 -2.6564 0 0 0 0.97444 1 10456 10456 4.756 0 1 + 8884 24317 6116 6240 10215 10215 0.05419587874143872 ELPLAIKFL 9 Unmodified _ELPLAIKFL_ 0 0 0 ENST00000406671.1_1_6:127683994-127684144:+|nuORF ENST00000406671.1_1_6:127683994-127684144:+|nuORF ENST00000406671.1_1_6:127683994-127684144:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.33056640625 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 101.9 1 101.85 101.35 102.35 -0.045853 0 0 0 0.84564 1 56604 56604 2.0598 0 1 8885 12935 6117 6241 10216 10216 0.12305265039231017 ELPNKRPSSL 10 Unmodified _ELPNKRPSSL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7879638671875 2 570.822212 1139.62987 0.35579 0.00020309 -2.4382 -0.0013918 -2.0824 -0.0011887 571.3225099435368 43.415 0.21653 43.104 42.969 43.185 -0.31039 12 10 2 0 0 0 0.22154 1 23142 23142 21.537 0 1 7540100 + 8886 17370 6118 6242 10217 10217 0.06564201909031908 ELPVPTGWKL 10 Unmodified _ELPVPTGWKL_ 0 0 0 REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF REV__ENST00000447721.6_1_12:57881873-57905922:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5716552734375 3 380.553492 1138.63865 1.4839 0.00056469 -0.037129 -1.413E-05 1.4467 0.00055056 380.55348013866166 30.802 0.38863 27.305 27.132 27.52 -3.497 44 17 3 0 0 0 0.40136 1 17323 17323 14.218 3.4187 1 109180000 + 8887 22171 6119 6243 10218 10218 0.07487175545543323 ELPVTILK 8 Unmodified _ELPVTILK_ 0 0 0 REV__nc|ENSG00000032742|Q13099-3|IFT88 REV__nc|ENSG00000032742|Q13099-3|IFT88 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7911987304688 2 456.791861 911.569169 1.6276 0.00074346 0.0015171 6.9302E-07 1.6291 0.00074415 456.79051983960505 103.12 0.072632 96.944 96.901 96.974 -6.1757 30 17 2 0 0 0 0.80722 1 69134 69134 2.3027 0 1 3194700 + 8888 17150 6120 6244 10219 10219 0.1098471659677216 ELQAAFEE 8 Unmodified _ELQAAFEE_ 0 0 0 ENST00000545777.1_1_11:67223622-67225073:+|nuORF;nc|ENSG00000175544|P57796-2|CABP4;ENSG00000175544|ENST00000325656|CABP4 ENST00000545777.1_1_11:67223622-67225073:+|nuORF ENST00000545777.1_1_11:67223622-67225073:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.4308471679688 1 936.430903 935.423627 0.25996 0.00024343 -0.10545 -9.875E-05 0.1545 0.00014468 936.4308776445314 38.118 0.35494 38.118 37.865 38.22 0 39 17 3 0 0 0 8.7369 1 20335 20335 16.942 0 1 8600700 8889 8525 6121 6245 10220 10220 -0.04666790990086156 ELQAKAGY 8 Unmodified _ELQAKAGY_ 0 0 0 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 REV__nc|ENSG00000164122|Q8WWX0-2|ASB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2311096191406 2 440.232168 878.449782 NaN NaN NaN NaN NaN NaN NaN 36.801 1 36.823 36.323 37.323 0.021545 0 0 0 0.97348 1 19511 19511 5.7604 0.52976 1 + 8890 21874 6122 6246 10221 10221 0.005695229720458883 ELQEHFQA 8 Unmodified _ELQEHFQA_ 0 0 0 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 ENSG00000226742|ENST00000451882|HSBP1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.9386901855469 2 501.237981 1000.46141 0.36281 0.00018186 0.66464 0.00033314 1.0275 0.000515 501.23842047642137 41.433 0.54845 36.825 36.513 37.062 -4.6079 56 35 2 0 0 0 0.66338 1 25029 25029 20.454 2.3073 1 36436000 8891 10593 6123 6247 10222 10222 -0.03880280004614178 ELQENQDEI 9 Unmodified _ELQENQDEI_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2525024414062 2 559.254025 1116.4935 0.39692 0.00022198 -0.60545 -0.0003386 -0.20853 -0.00011662 559.2537130239642 92.106 0.25384 92.106 92.012 92.266 0 28 16 2 0 0 0 0.58865 1 50922 50922 2.0598 0 1 548980 8892 2002;3346 6124 6248 10223 10223 -0.06008957112135249 ELQENQDEI 9 Unmodified _ELQENQDEI_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 559.254025 1116.4935 0.39692 0.00022198 -0.60545 -0.0003386 -0.20853 -0.00011662 559.2537130239642 92.106 0.25384 92.106 92.012 92.266 0 -0.045638 0.00018717 NaN 2.0598 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 548980 8893 2002;3346 6124 6248 -0.06008957112135249 ELQENQDEI 9 Unmodified _ELQENQDEI_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENST00000462818.1_1_3:136219063-136323180:-|nuORF;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.254025 1116.4935 0.60852 0.00034032 -0.80407 -0.00044968 -0.19555 -0.00010936 559.2536786823181 92.655 0.27853 92.198 92.056 92.334 -0.4574 0.045638 -3.499E-05 NaN 2.0598 32 12 4 NaN NaN NaN NaN 0 NaN NaN 0 1339000 8894 2002;3346 6124 6248 -0.06008957112135249 ELQETEHL 8 Unmodified _ELQETEHL_ 0 0 0 ENST00000321235.10_1_11:113582627-113582798:+|nuORF ENST00000321235.10_1_11:113582627-113582798:+|nuORF ENST00000321235.10_1_11:113582627-113582798:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7453002929688 2 499.743096 997.47164 NaN NaN NaN NaN NaN NaN NaN 74.109 1 74.109 73.609 74.609 0 0 0 0 0.97444 1 41245 41245 2.5775 0.27475 1 8895 11770 6125 6249 10224 10224 -0.027197170700446804 ELQHAQEL 8 Unmodified _ELQHAQEL_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2451782226562 2 484.245806 966.47706 -0.44622 -0.00021608 -0.3641 -0.00017631 -0.81033 -0.0003924 484.24549247513505 27.31 0.27408 27.31 27.174 27.449 0 25 13 2 0 0 0 0.42686 1 14027 14027 41.84 7.7372 1 9716600 8896 2378 6126 6250 10225 10225 -0.007519934875631407 ELQHQIRH 8 Unmodified _ELQHQIRH_ 0 0 0 REV__ENST00000537064.5_1_12:133235217-133253139:-|nuORF REV__ENST00000537064.5_1_12:133235217-133253139:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1930236816406 3 354.193068 1059.55738 -0.58416 -0.00020691 0.71221 0.00025226 0.12804 4.5352E-05 354.1934222842846 15.235 0.028063 15.235 15.22 15.248 0 10 6 2 0 0 0 0.81049 1 7325 7325 0.35063 0 1 258060 + 8897 22962 6127 6251 10226 10226 0.02997912626165089 ELQKLEQQL 9 Unmodified _ELQKLEQQL_ 0 0 0 ENSG00000120051|ENST00000369704|CFAP58 ENSG00000120051|ENST00000369704|CFAP58 ENSG00000120051|ENST00000369704|CFAP58 MSMS AL20221201_MKP_PDAC_01 4 376.8817138671875 3 376.880156 1127.61864 NaN NaN NaN NaN NaN NaN NaN 18.813 1 16.192 15.692 16.692 -2.6215 0 0 0 0.41144 1 9930 9930 19.362 0 1 8898 3490 6128 6252 10227 10227 0.059933798148904316 ELQKMMMKRSY 11 Unmodified _ELQKMMMKRSY_ 0 0 0 REV__ENSG00000120329|ENST00000239451|SLC25A2 REV__ENSG00000120329|ENST00000239451|SLC25A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.3726196289062 2 722.8591 1443.70365 0.84109 0.00060799 0.60669 0.00043855 1.4478 0.0010465 722.8590450701448 90.942 1.211 84.766 84.041 85.252 -6.1757 202 71 5 0 0 0 0.50515 1 59878 59878 16.149 3.9084 1 180020000 + 8899 19238 6129 6253 10228 10228 -0.00045657306804969267 ELQLLMIDNS 10 Unmodified _ELQLLMIDNS_ 0 0 0 REV__ENSG00000100450|ENST00000216338|GZMH REV__ENSG00000100450|ENST00000216338|GZMH MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5381469726562 3 392.537401 1174.59037 0.69298 0.00027202 1.3655 0.00053603 2.0585 0.00080805 392.53801168258315 27.934 0.50891 24.786 24.568 25.077 -3.1482 61 27 3 0 0 0 0.64628 1 15600 15600 5.0475 0 1 15960000 + 8900 18069 6130 6254 10229 10229 0.010063138433224594 ELQLRYNGVGR 11 Unmodified _ELQLRYNGVGR_ 0 0 0 ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6;nc|ENSG00000183087|Q14393-5|GAS6;nc|ENSG00000183087|Q14393-4|GAS6;ENST00000480426.5_1_13:114523839-114535869:-|nuORF;ENST00000610073.1_1_13:114523839-114538639:-|nuORF;nc|ENSG00000183087|Q14393-3|GAS6 ENSG00000183087|ENST00000327773|GAS6 ENSG00000183087|ENST00000327773|GAS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.5741882324219 3 435.573837 1303.69968 0.36187 0.00015762 0.43901 0.00019122 0.80087 0.00034884 435.5740469018867 28.29 0.23568 28.32 28.188 28.424 0.029564 14 9 2 0 0 0 0.59689 1 14721 14721 6.2344 1.1868 1 1800900 8901 9113 6131 6255 10230 10230 0.059980805776376656 ELQPRRQEL 9 Unmodified _ELQPRRQEL_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD REV__ENSG00000198947|ENST00000357033|DMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2203979492188 3 390.219283 1167.63602 -0.91815 -0.00035828 1.3056 0.00050948 0.38747 0.0001512 390.2199794986085 32.155 0.2012 32.155 32.002 32.204 0 15 9 2 0 0 0 0.45045 1 16776 16776 6.6304 0 1 2219800 + 8902 24105 6132 6256 10231 10231 0.05890720140587291 ELQQMMVEC 9 Unmodified _ELQQMMVEC_ 0 0 0 ENSG00000157184|ENST00000371486|CPT2 ENSG00000157184|ENST00000371486|CPT2 ENSG00000157184|ENST00000371486|CPT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.8267211914062 3 370.825789 1109.45554 NaN NaN NaN NaN NaN NaN NaN 81.287 1 80.794 80.294 81.294 -0.49247 0 0 0 0.85852 1 44514 44514 0.20686 0 1 8903 6505 6133 6257 10232 10232 -0.09481205894439881 ELQQQEQQH 9 Unmodified _ELQQQEQQH_ 0 0 0 ENSG00000110200|ENST00000227618|ANAPC15;nc|ENSG00000110200|P60006-2|ANAPC15 ENSG00000110200|ENST00000227618|ANAPC15 ENSG00000110200|ENST00000227618|ANAPC15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.3245849609375 2 584.273084 1166.53161 1.1682 0.00068257 2.4233 0.0014158 3.5915 0.0020984 584.2743076545456 86.797 0.37648 80.621 80.338 80.715 -6.1757 25 19 2 0 0 0 0.20139 1 57281 57281 10.824 2.9138 1 7417900 8904 2707 6134 6258 10233 10233 -0.044990264068019314 ELQREMHEMAQ 11 Unmodified _ELQREMHEMAQ_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 701.3172607421875 2 701.316111 1400.61767 0.357 0.00025037 1.4486 0.0010159 1.8056 0.0012663 701.3172227121743 79.095 0.4082 78.609 78.416 78.824 -0.48596 63 17 5 0 0 0 0.69708 1 43363 43363 4.5289 1.2476 1 7944200 8905 3335 6135 6259 10234 10234 -0.06661525887943753 ELQRRIEQI 9 Unmodified _ELQRRIEQI_ 0 0 0 REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5632019042969 3 395.56305 1183.66732 -0.57286 -0.0002266 -0.52757 -0.00020869 -1.1004 -0.00043529 395.5627680789956 29.769 0.18531 29.769 29.662 29.847 0 15 11 2 0 0 0 0.12424 1 15421 15421 22.658 6.0922 1 5776000 + 8906 17833 6136 6260 10235 10235 0.0828329317466796 ELQRRIEQI 9 Unmodified _ELQRRIEQI_ 0 0 0 REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF REV__ENST00000549820.1_1_12:113344820-113354315:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 395.56305 1183.66732 -0.57286 -0.0002266 -0.52757 -0.00020869 -1.1004 -0.00043529 395.5627680789956 29.769 0.18531 29.769 29.662 29.847 0 0 0 NaN 22.658 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5776000 + 8907 17833 6136 6260 0.0828329317466796 ELQTFISE 8 Unmodified _ELQTFISE_ 0 0 0 ENST00000493787.5_1_10:75056784-75072389:-|nuORF;nc|ENSG00000156042|Q5T0N1-2|CFAP70;nc|ENSG00000156042|Q5T0N1|CFAP70;ENSG00000156042|ENST00000355577|CFAP70 ENST00000493787.5_1_10:75056784-75072389:-|nuORF ENST00000493787.5_1_10:75056784-75072389:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4751586914062 1 966.477854 965.470577 0.089779 8.6769E-05 -0.95535 -0.00092333 -0.86557 -0.00083656 966.4759982232509 64.917 0.22818 64.917 64.765 64.994 0 17 10 2 0 0 0 0.70294 1 36170 36170 16.942 0 1 1107600 8908 6426 6137 6261 10236 10236 -0.013539314389504398 ELQVASMTSPL 11 Unmodified _ELQVASMTSPL_ 0 0 0 REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5382995605469 3 392.537401 1174.59037 0.091455 3.59E-05 0.81964 0.00032174 0.9111 0.00035764 392.5380033733862 25.04 0.34199 25.065 24.825 25.167 0.024427 31 15 3 0 0 0 0.50515 1 12990 12990 12.856 0 1 15411000 + 8909 18894 6138 6262 10237 10237 0.010063138433224594 ELQVASMTSPL 11 Unmodified _ELQVASMTSPL_ 0 0 0 REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF REV__ENST00000482844.5_1_3:3196419-3214524:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8720703125 3 392.537401 1174.59037 0.69298 0.00027202 1.3655 0.00053603 2.0585 0.00080805 392.53801168258315 27.934 0.50891 24.786 24.568 25.077 -3.1482 61 27 3 0 0 0 0.44182 1 15459 15459 11.631 0 1 15960000 + 8910 18894 6138 6262 10238 10238 0.010063138433224594 ELQVTYAL 8 Unmodified _ELQVTYAL_ 0 0 0 REV__ENST00000522111.2_2_1:27326543-27326606:+|nuORF REV__ENST00000522111.2_2_1:27326543-27326606:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7558288574219 2 468.755475 935.496398 0.63189 0.0002962 0.31676 0.00014848 0.94865 0.00044468 468.75555767179344 67.008 0.34771 67.008 66.878 67.226 0 31 15 3 0 0 0 0.80232 1 37481 37481 5.2307 0 1 2518500 + 8911 28296 6139 6263 10239 10239 0.026069628033383196 ELRAHQGMVWT 11 Unmodified _ELRAHQGMVWT_ 0 0 0 ENST00000374155.7_1_2:218937581-218938631:+|nuORF;ENST00000344321.8_1_2:218937581-218939838:+|nuORF ENST00000374155.7_1_2:218937581-218938631:+|nuORF ENST00000374155.7_1_2:218937581-218938631:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.8343505859375 2 664.332421 1326.65029 0.42839 0.00028459 -0.12014 -7.9813E-05 0.30825 0.00020478 664.3326058678704 100.69 0.20982 94.51 94.374 94.584 -6.1757 36 14 4 0 0 0 0.65846 1 67388 67388 8.1555 3.2585 1 200040000 8912 12013 6140 6264 10240 10240 3.049297197321721E-05 ELRDHRKY 8 Unmodified _ELRDHRKY_ 0 0 0 nc|ENSG00000161649|Q6UXG3-3|CD300LG;nc|ENSG00000161649|Q6UXG3-2|CD300LG;nc|ENSG00000161649|Q6UXG3-5|CD300LG;nc|ENSG00000161649|Q6UXG3-4|CD300LG;ENSG00000161649|ENST00000317310|CD300LG nc|ENSG00000161649|Q6UXG3-3|CD300LG nc|ENSG00000161649|Q6UXG3-3|CD300LG MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3005981445312 2 558.799072 1115.58359 1.3191 0.0007371 0.69169 0.00038652 2.0108 0.0011236 558.8003680443702 89.17 1.4737 82.995 82.494 83.968 -6.1757 145 82 3 0 0 0 0.79669 1 59356 59356 8.5933 0.68312 1 22758000 8913 6799 6141 6265 10241 10241 0.03042181797604826 ELREIEKEL 9 Unmodified _ELREIEKEL_ 0 0 0 REV__ENST00000577772.5_1_18:66504000-66564823:+|nuORF REV__ENST00000577772.5_1_18:66504000-66564823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2187194824219 3 386.883677 1157.6292 -0.049076 -1.8987E-05 1.9421 0.00075137 1.893 0.00073238 387.2187379381956 32.158 0.2084 32.029 31.94 32.149 -0.12915 12 7 2 0 0 0 0.34999 1 16760 16760 10.151 0 1 1593400 + 8914 21031 6142 6266 10242 10242 0.05669362469348016 ELREKFWEFYK 11 Unmodified _ELREKFWEFYK_ 0 0 0 ENST00000533807.3_1_19:18304624-18306862:+|nuORF;ENSG00000254858|ENST00000599612|MPV17L2 ENST00000533807.3_1_19:18304624-18306862:+|nuORF ENST00000533807.3_1_19:18304624-18306862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.9403686523438 3 525.604915 1573.79291 0.091923 4.8315E-05 0.84287 0.00044301 0.93479 0.00049133 525.6052029964451 25.097 0.27151 22.214 22.083 22.355 -2.8831 58 30 2 0 0 0 0.69838 1 13668 13668 4.4062 0.81348 1 31670000 8915 10782 6143 6267 10243 10243 0.028969602402185046 ELREMAWST 9 Unmodified _ELREMAWST_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7666015625 2 561.766049 1121.51754 0.53735 0.00030186 -1.4077 -0.00079079 -0.87035 -0.00048893 561.7650147372464 65.059 0.25968 64.575 64.403 64.663 -0.48428 27 11 3 0 0 0 0.32871 1 35477 35477 15.847 0 1 2744900 8916 563 6144 6268 10244 10244 -0.03835395159467225 ELREYFKKQI 10 Unmodified _ELREYFKKQI_ 0 0 0 nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9221496582031 3 451.922355 1352.74524 0.49323 0.0002229 -0.25194 -0.00011386 0.24129 0.00010904 451.9222136691411 19.654 0.082371 19.661 19.61 19.692 0.0078487 5 3 2 0 0 0 0.69626 1 10007 10007 3.3196 1.5774 1 762990 8917 16343 6145 6269 10245 10245 0.0829730604004908 ELRKAFEL 8 Unmodified _ELRKAFEL_ 0 0 0 REV__ENST00000472710.2_1_1:46744539-46744996:-|nuORF REV__ENST00000472710.2_1_1:46744539-46744996:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2904357910156 2 503.290017 1004.56548 NaN NaN NaN NaN NaN NaN NaN 65.855 1 65.371 64.871 65.871 -0.48428 0 0 0 0.93813 1 35951 35951 13.042 1.4022 1 + 8918 19829 6146 6270 10246 10246 0.06338046822895649 ELRKSPVF 8 Unmodified _ELRKSPVF_ 0 0 0 ENST00000565598.2_1_16:53404185-53404910:-|nuORF;ENST00000565421.1_1_16:53404024-53404910:-|nuORF ENST00000565598.2_1_16:53404185-53404910:-|nuORF ENST00000565598.2_1_16:53404185-53404910:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2849731445312 2 488.284734 974.554916 0.49374 0.00024109 -0.22848 -0.00011157 0.26526 0.00012952 488.28464618605904 46.331 0.37882 41.251 40.994 41.372 -5.0805 48 25 2 0 0 0 0.58902 1 28635 28635 26.884 0.54238 1 40216000 8919 15406 6147 6271 10247 10247 0.06662064168483539 ELRLLRLKLKV 11 Unmodified _ELRLLRLKLKV_ 0 0 0 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 MSMS AL20221201_MKP_PDAC_01 4 690.971923828125 2 690.974296 1379.93404 NaN NaN NaN NaN NaN NaN NaN 92.821 1 86.646 86.146 87.146 -6.1757 0 0 0 0.94301 1 61395 61395 0.35063 0 1 8920 2305 6148 6272 10248 10248 0.2592700340414922 ELRLRCAL 8 Unmodified _ELRLRCAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2824096679688 2 487.284211 972.55387 0.56085 0.00027329 -2.7691 -0.0013494 -2.2083 -0.0010761 487.28277991122326 49.084 0.20455 48.712 48.616 48.82 -0.37172 15 9 2 0 0 0 0.74163 1 26377 26377 13.508 0.97634 1 2099800 8921 4011 6149 6273 10249 10249 0.06649526527905891 ELRNDICAKV 10 Unmodified _ELRNDICAKV_ 0 0 0 REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF REV__ENST00000487593.1_1_20:52779237-52781081:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8759765625 3 387.541257 1159.60194 0.92901 0.00036003 -0.35582 -0.0001379 0.57319 0.00022213 387.5410661834616 47.101 0.26572 47.067 46.956 47.222 -0.033417 24 13 2 0 0 0 0.62068 1 25359 25359 5.7834 0 1 10595000 + 8922 17100 6150 6274 10250 10250 0.028525556572731148 ELRQLLDCDTP 11 Unmodified _ELRQLLDCDTP_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825073242188 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 13.596 1 13.596 13.096 14.096 0 0 0 0 0.94337 1 6433 6433 0.094841 0 1 8923 5710 6151 6275 10251 10251 -0.010198002420338526 ELRQLLDCDTP 11 Unmodified _ELRQLLDCDTP_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8827514648438 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 14.587 1 14.556 14.056 15.056 -0.030868 0 0 0 0.94337 1 7107 7107 0.094841 0 1 8924 5710 6151 6275 10252 10252 -0.010198002420338526 ELRQLLDCDTP 11 Unmodified _ELRQLLDCDTP_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822631835938 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 15.795 1 15.781 15.281 16.281 -0.014067 0 0 0 0.94337 1 7769 7769 0.094841 0 1 8925 5710 6151 6275 10253 10253 -0.010198002420338526 ELRQLLDCDTP 11 Unmodified _ELRQLLDCDTP_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8816833496094 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 5.7405 1 5.7416 5.2416 6.2416 0.0010915 0 0 0 0.94337 1 2891 2891 0.094841 0 1 8926 5710 6151 6275 10254 10254 -0.010198002420338526 ELRQLLDCDTP 11 Unmodified _ELRQLLDCDTP_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8819885253906 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 15.308 1 15.314 14.814 15.814 0.0057774 0 0 0 0.94337 1 7624 7624 0.094841 0 1 8927 5710 6151 6275 10255 10255 -0.010198002420338526 ELRQPQQRLQL 11 Unmodified _ELRQPQQRLQL_ 0 0 0 ENST00000583517.1_1_17:26368772-26370155:+|nuORF ENST00000583517.1_1_17:26368772-26370155:+|nuORF ENST00000583517.1_1_17:26368772-26370155:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.9560546875 4 352.955938 1407.79465 0.85044 0.00030017 0.42735 0.00015084 1.2778 0.000451 352.95617906481317 23.363 0.23314 20.585 20.467 20.7 -2.7784 22 14 2 0 0 0 0.7187 1 12624 12624 1.0136 0 1 5721200 8928 15587 6152 6276 10256 10256 0.1070601404885565 ELRRELEEL 9 Unmodified _ELRRELEEL_ 0 0 0 ENSG00000076604|ENST00000262395|TRAF4 ENSG00000076604|ENST00000262395|TRAF4 ENSG00000076604|ENST00000262395|TRAF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2187805175781 3 396.21906 1185.63535 0.41117 0.00016291 0.073323 2.9052E-05 0.48449 0.00019197 396.21904735356435 36.771 0.2499 36.771 36.628 36.878 0 29 11 3 0 0 0 0.15471 1 19507 19507 20.581 4.0151 1 3899700 8929 1189 6153 6277 10257 10257 0.04995880700857924 ELRRRRPKLKK 11 Unmodified _ELRRRRPKLKK_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS AL20221201_MKP_PDAC_01 4 493.9973754882812 3 493.995071 1478.96338 NaN NaN NaN NaN NaN NaN NaN 54.973 1 49.107 48.607 49.607 -5.8653 0 0 0 0.9434 1 34935 34935 0.073264 0.073264 1 8930 4890 6154 6278 10258 10258 0.24305960472997867 ELRRRWHRWRL 11 Unmodified _ELRRRWHRWRL_ 0 0 0 ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.4821166992188 2 832.479466 1662.94438 NaN NaN NaN NaN NaN NaN NaN 88.91 1 88.958 88.458 89.458 0.047852 0 0 0 0.9435 1 49464 49464 0 0 1 8931 10535 6155 6279 10259 10259 0.1394242390197178 ELRRRWHRWRL 11 Unmodified _ELRRRWHRWRL_ 0 0 0 ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.5667724609375 2 832.479466 1662.94438 NaN NaN NaN NaN NaN NaN NaN 93.363 1 93.386 92.886 93.886 0.022987 0 0 0 0.9435 1 51908 51908 0 0 1 8932 10535 6155 6279 10260 10260 0.1394242390197178 ELRWHDHYYRR 11 Unmodified _ELRWHDHYYRR_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 815.422607421875 2 815.902922 1629.79129 1.8257 0.0014896 0.67197 0.00054826 2.4977 0.0020379 816.4050007717566 81.572 0.24593 81.632 81.507 81.752 0.059929 13 9 2 0 0 0 0.74429 1 45096 45096 0.35063 0.35063 1 1669200 + 8933 23687 6156 6280 10261 10261 0.0015876399481840053 ELRWHDHYYRR 11 Unmodified _ELRWHDHYYRR_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 815.902922 1629.79129 0.23426 0.00019114 0.2038 0.00016628 0.43807 0.00035742 816.4041022549185 82.155 0.15965 81.66 81.582 81.742 -0.4952 0.013733 -0.00054548 NaN 0.35063 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 505040 + 8934 23687 6156 6280 0.0015876399481840053 ELRWHDHYYRR 11 Unmodified _ELRWHDHYYRR_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 815.902922 1629.79129 1.8257 0.0014896 0.67197 0.00054826 2.4977 0.0020379 816.4050007717566 81.572 0.24593 81.632 81.507 81.752 0.059929 -0.013733 0.00021847 NaN 0.35063 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1669200 + 8935 23687 6156 6280 0.0015876399481840053 ELSAHRPQL 9 Unmodified _ELSAHRPQL_ 0 0 0 ENST00000547221.1_3_6:31106167-31107440:+|nuORF ENST00000547221.1_3_6:31106167-31107440:+|nuORF ENST00000547221.1_3_6:31106167-31107440:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7906494140625 2 525.788173 1049.56179 0.45439 0.00023891 2.2917 0.0012049 2.746 0.0014438 525.7892464107748 84.546 0.30971 84.546 84.409 84.719 0 33 14 3 0 0 0 0.55144 1 46942 46942 4.3292 0 1 1596300 8936 15119 6157 6281 10262 10262 0.03899377049060604 ELSCERKVWF 10 Unmodified _ELSCERKVWF_ 0 0 0 ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A ENSG00000166963|ENST00000300231|MAP1A ENSG00000166963|ENST00000300231|MAP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.88525390625 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 67.533 1 67.051 66.551 67.551 -0.48218 0 0 0 0.98857 1 36896 36896 1.9064 0 1 8937 7558 6158 6282 10263 10263 -0.0027487130862482445 ELSCERKVWF 10 Unmodified _ELSCERKVWF_ 0 0 0 ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A ENSG00000166963|ENST00000300231|MAP1A ENSG00000166963|ENST00000300231|MAP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8848876953125 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 103.32 1 103.22 102.72 103.72 -0.10458 0 0 0 0.9997 1 56358 56358 0.69767 0 1 8938 7558 6158 6282 10264 10264 -0.0027487130862482445 ELSEDETHNK 10 Unmodified _ELSEDETHNK_ 0 0 0 REV__ENSG00000154274|ENST00000381980|C4orf19 REV__ENSG00000154274|ENST00000381980|C4orf19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.1823120117188 3 401.182563 1200.52586 -0.85893 -0.00034459 1.4647 0.00058762 0.60578 0.00024303 401.18333947637836 32.086 0.20289 32.086 31.961 32.164 0 21 9 3 0 0 0 0.66569 1 16741 16741 3.5871 0.95582 1 1109800 + 8939 21221 6159 6283 10265 10265 -0.06638169709140129 ELSELAKAL 9 Unmodified _ELSELAKAL_ 0 0 0 REV__ENSG00000126001|ENST00000397527|CEP250 REV__ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20221201_MKP_PDAC_01 4 973.5582885742188 1 973.556438 972.549162 -0.013599 -1.3239E-05 0.26124 0.00025433 0.24764 0.00024109 973.5567718443558 58.147 0.30808 52.12 51.957 52.265 -6.0275 29 16 2 0 0 0 0.008678 1 37291 37291 88.904 6.3743 1 24019000 + 8940 19536 6160 6284 10266 10266 0.061789208661252815 ELSHYTFYF 9 Unmodified _ELSHYTFYF_ 0 0 0 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 402.9197692871094 3 402.853718 1205.53933 0.98409 0.00039644 -1.2493 -0.0005033 -0.26525 -0.00010686 402.85337512123533 39.476 0.27994 35.025 34.811 35.091 -4.4509 22 16 2 0 0 0 0.21806 1 23321 23321 1.0715 0 1 7563800 8941 8041 6161 6285 10267 10267 -0.05522267139235737 ELSIDKFGL 9 Unmodified _ELSIDKFGL_ 0 0 0 REV__nc|ENSG00000152578|P48058-2|GRIA4 REV__nc|ENSG00000152578|P48058-2|GRIA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.283203125 2 511.281857 1020.54916 0.21178 0.00010828 0.60035 0.00030695 0.81213 0.00041523 511.2821132110692 75.994 0.36352 75.515 75.346 75.71 -0.47939 23 15 2 0 0 0 0.39863 1 41584 41584 12.532 3.1484 1 1027100 + 8942 29710 6162 6286 10268 10268 0.03970920866152028 ELSIDKFGL 9 Unmodified _ELSIDKFGL_ 0 0 0 REV__nc|ENSG00000152578|P48058-2|GRIA4 REV__nc|ENSG00000152578|P48058-2|GRIA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.281857 1020.54916 0.33876 0.0001732 -0.11363 -5.8095E-05 0.22513 0.00011511 511.7831831813872 75.534 0.1427 75.534 75.453 75.595 0 0.0098722 -0.00064968 NaN 12.532 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 401960 + 8943 29710 6162 6286 0.03970920866152028 ELSLFQQRAAL 11 Unmodified _ELSLFQQRAAL_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.9072570800781 3 425.906705 1274.69829 0.99792 0.00042502 0.14403 6.1345E-05 1.142 0.00048637 425.906819328886 39.522 0.44083 35.071 34.84 35.281 -4.4509 77 26 4 0 0 0 0.28407 1 23494 23494 17.049 0 1 85774000 + 8944 17984 6163 6287 10269 10269 0.07192446488920723 ELSLLLQNTH 10 Unmodified _ELSLLLQNTH_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;ENST00000560342.5_1_14:24616937-24618114:+|nuORF ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.2900390625 2 584.322045 1166.62954 0.47107 0.00027526 -0.85433 -0.00049921 -0.38326 -0.00022395 584.3219470634576 82.535 0.20155 76.359 76.288 76.49 -6.1757 15 11 2 0 0 0 0.23162 1 54296 54296 12.241 3.6474 1 19112000 8945 1605 6164 6288 10270 10270 0.05288782189199992 ELSLPVVK 8 Unmodified _ELSLPVVK_ 0 0 0 REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7773742675781 2 442.776211 883.537869 NaN NaN NaN NaN NaN NaN NaN 31.347 1 31.377 30.877 31.877 0.030106 0 0 0 0.97444 1 16418 16418 2.3027 0 1 + 8946 22391 6165 6289 10271 10271 0.09144143562673435 ELSPALCPE 9 Unmodified _ELSPALCPE_ 0 0 0 REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7314147949219 2 479.731143 957.447733 0.74426 0.00035704 0.042014 2.0156E-05 0.78627 0.0003772 479.7315896284337 50.716 0.21593 50.662 50.55 50.766 -0.053871 21 10 3 0 0 0 0.43463 1 27424 27424 10.824 0.64053 1 2876100 + 8947 21570 6166 6290 10272 10272 -0.032692738280843514 ELSPPFRR 8 Unmodified _ELSPPFRR_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;ENST00000470139.1_2_1:43891781-43893406:+|nuORF nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2793579101562 2 501.279983 1000.54541 -0.33145 -0.00016615 -0.50206 -0.00025167 -0.83351 -0.00041782 501.27964600455294 23.084 0.228 23.097 22.957 23.185 0.012396 15 10 2 0 0 0 0.72664 1 11729 11729 14.838 1.7958 1 3829200 8948 10061 6167 6291 10273 10273 0.04516295882956456 ELSRYHSLL 9 Unmodified _ELSRYHSLL_ 0 0 0 REV__nc|ENSG00000272395|K9M1U5-4|IFNL4 REV__nc|ENSG00000272395|K9M1U5-4|IFNL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.758544921875 2 559.303655 1116.59276 0.74685 0.00041772 0.59506 0.00033282 1.3419 0.00075054 559.8047677041616 38.688 0.27575 38.688 38.515 38.79 0 30 12 3 0 0 0 0.20139 1 20613 20613 3.5965 1.5367 1 2632400 + 8949 29999 6168 6292 10274 10274 0.03912530363299993 ELSSAPHLEL 10 Unmodified _ELSSAPHLEL_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20221201_MKP_PDAC_01 4 365.8619079589844 3 365.860873 1094.56079 NaN NaN NaN NaN NaN NaN NaN 20.919 1 18.226 17.726 18.726 -2.693 0 0 0 0.94014 1 11166 11166 8.9762 2.2531 1 + 8950 24045 6169 6293 10275 10275 0.017291178894765835 ELSTGSHCPVL 11 Unmodified _ELSTGSHCPVL_ 0 0 0 REV__ENST00000233596.7_3_19:1497206-1497893:+|nuORF REV__ENST00000233596.7_3_19:1497206-1497893:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.2949829101562 2 571.779156 1141.54376 0.7027 0.00040179 -0.62686 -0.00035842 0.075845 4.3367E-05 571.7781376475406 66.425 0.31236 60.249 60.079 60.392 -6.1757 24 16 2 0 0 0 0.27089 1 43296 43296 22.736 10.205 1 14120000 + 8951 24822 6170 6294 10276 10276 -0.02135125987979336 ELSWQGLPKG 10 Unmodified _ELSWQGLPKG_ 0 0 0 REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF REV__ENST00000417565.5_1_1:84315685-84326616:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2017517089844 3 372.201229 1113.58186 1.4116 0.00052541 -0.32572 -0.00012123 1.0859 0.00040418 372.20115505548046 41.543 0.63909 36.936 36.772 37.412 -4.6079 47 41 2 0 0 0 0.69377 1 24987 24987 1.7423 0.67081 1 31481000 + 8952 26788 6171 6295 10277 10277 0.02961127988987755 ELTELILLQ 9 Unmodified _ELTELILLQ_ 0 0 0 REV__ENST00000484352.5_1_2:74758074-74758502:+|nuORF REV__ENST00000484352.5_1_2:74758074-74758502:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.29638671875 2 536.31844 1070.62233 0.15376 8.2467E-05 3.0015 0.0016097 3.1552 0.0016922 536.3192364239833 76.268 0.15058 75.789 75.661 75.812 -0.47945 8 5 2 0 0 0 0.21564 1 41734 41734 3.9444 0 1 258020 + 8953 24936 6172 6296 10278 10278 0.08984049588775633 ELTKATIDQPP 11 Unmodified _ELTKATIDQPP_ 0 0 0 REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.8255004882812 2 606.82716 1211.63977 0.1195 7.2517E-05 -1.6604 -0.0010076 -1.5409 -0.00093505 606.8266045801433 67.072 0.33012 67.072 66.896 67.226 0 33 14 3 0 0 0 0.53952 1 37365 37365 14.405 1.8738 1 2332800 + 8954 17742 6173 6297 10279 10279 0.042413451237507616 ELTKKNQEC 9 Unmodified _ELTKKNQEC_ 0 0 0 REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7728881835938 2 546.771331 1091.52811 0.30232 0.0001653 1.0142 0.00055454 1.3165 0.00071984 546.771830607523 58.546 0.31041 58.546 58.366 58.677 0 22 12 2 0 0 0 0.23158 1 32566 32566 20.454 3.3407 1 8251200 + 8955 21836 6174 6298 10280 10280 -0.013994125050203365 ELTKQLESL 9 Unmodified _ELTKQLESL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L;ENST00000585905.1_1_19:45898523-45909561:-|nuORF ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2974853515625 2 530.797872 1059.58119 0.4637 0.00024613 2.1305 0.0011308 2.5942 0.001377 530.8005793555918 78.311 0.15147 72.135 71.99 72.142 -6.1757 12 8 2 0 0 0 0.23158 1 51226 51226 20.454 2.3073 1 14386000 8956 2248 6175 6299 10281 10281 0.05378288549286481 ELTLDTPYY 9 Unmodified _ELTLDTPYY_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7687377929688 2 557.76878 1113.52301 1.1526 0.00064286 -1.4271 -0.00079599 -0.27454 -0.00015313 557.7675760644714 94.733 0.49899 88.557 88.392 88.891 -6.1757 44 28 2 0 0 0 0.30562 1 62900 62900 16.942 4.7016 1 5634800 8957 949 6176 6300 10282 10282 -0.029213930960168 ELTLSFSSFH 10 Unmodified _ELTLSFSSFH_ 0 0 0 REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF REV__ENST00000367334.9_1_1:201104596-201104782:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2862548828125 2 584.287671 1166.56079 0.35839 0.0002094 -0.084911 -4.9612E-05 0.27348 0.00015979 584.2868515254177 65.668 0.95482 59.492 59.162 60.117 -6.1757 145 55 3 0 0 0 0.52888 1 42865 42865 14.838 0.93222 1 117840000 + 8958 25983 6177 6301 10283 10283 -0.015828821105060342 ELTPCSLL 8 Unmodified _ELTPCSLL_ 0 0 0 REV__ENST00000546645.1_1_12:56212243-56212363:+|nuORF REV__ENST00000546645.1_1_12:56212243-56212363:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2308959960938 2 438.230779 874.447005 -0.51914 -0.0002275 0.55206 0.00024193 0.03292 1.4427E-05 438.23116080209854 27.642 0.43459 27.642 27.469 27.903 0 56 20 4 0 0 0 0.28922 1 14287 14287 56.541 2.9657 1 21596000 + 8959 28662 6178 6302 10284 10284 0.004759315228966443 ELTRQRNQL 9 Unmodified _ELTRQRNQL_ 0 0 0 nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3 nc|ENSG00000018189|Q7L099-4|RUFY3 nc|ENSG00000018189|Q7L099-4|RUFY3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.5512084960938 3 386.551033 1156.63127 NaN NaN NaN NaN NaN NaN NaN 24.375 1 24.375 23.875 24.875 0 0 0 0 0.71962 1 12456 12456 8.7454 0.58988 1 8960 506 6179 6303 10285 10285 0.05921835997787639 ELTVLDYDK 9 Unmodified _ELTVLDYDK_ 0 0 0 nc|ENSG00000129990|O00445-2|SYT5;ENSG00000129990|ENST00000354308|SYT5 nc|ENSG00000129990|O00445-2|SYT5 nc|ENSG00000129990|O00445-2|SYT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2828369140625 2 548.282054 1094.54956 0.61588 0.00033768 0.036719 2.0132E-05 0.6526 0.00035781 548.2820855491012 73.227 0.73534 72.751 72.451 73.187 -0.47588 81 32 3 0 0 0 0.14602 1 40048 40048 28.487 9.2299 1 7636700 8961 4170 6180 6304 10286 10286 0.006062957953190562 ELTVLDYDK 9 Unmodified _ELTVLDYDK_ 0 0 0 nc|ENSG00000129990|O00445-2|SYT5;ENSG00000129990|ENST00000354308|SYT5 nc|ENSG00000129990|O00445-2|SYT5 nc|ENSG00000129990|O00445-2|SYT5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.282054 1094.54956 0.61588 0.00033768 0.036719 2.0132E-05 0.6526 0.00035781 548.2820855491012 73.227 0.73534 72.751 72.451 73.187 -0.47588 0.024771 8.9529E-05 NaN 28.487 81 32 3 NaN NaN NaN NaN 0 NaN NaN 0 7636700 8962 4170 6180 6304 0.006062957953190562 ELTVPVKEAL 10 Unmodified _ELTVPVKEAL_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8841247558594 3 366.885018 1097.63323 NaN NaN NaN NaN NaN NaN NaN 24.147 1 24.147 23.647 24.647 0 0 0 0 0.91954 1 12327 12327 7.1017 0.90987 1 8963 1857 6181 6305 10287 10287 0.08831451963033032 ELTWDYNY 8 Unmodified _ELTWDYNY_ 0 0 0 nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.23876953125 2 552.237647 1102.46074 0.68866 0.0003803 -1.2413 -0.00068547 -0.55261 -0.00030517 552.2379193238617 43.249 0.61385 38.484 38.243 38.857 -4.7648 136 41 5 0 0 0 0.80232 1 26324 26324 5.2307 0 1 101900000 8964 5503 6182 6306 10288 10288 -0.08639119444342214 ELTWDYNY 8 Unmodified _ELTWDYNY_ 0 0 0 nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.4949035644531 3 368.49419 1102.46074 1.2955 0.00047737 0.13035 4.8034E-05 1.4258 0.0005254 368.49489454034097 43.217 0.46577 38.452 38.258 38.724 -4.7648 65 32 3 0 0 0 0.77907 1 26356 26356 11.64 6.7433 1 24061000 8965 5503 6182 6306 10289 10289 -0.08639119444342214 ELVCPRTFWRI 11 Unmodified _ELVCPRTFWRI_ 0 0 0 ENST00000446488.7_1_11:129758641-129762683:-|nuORF ENST00000446488.7_1_11:129758641-129762683:-|nuORF ENST00000446488.7_1_11:129758641-129762683:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.258056640625 3 473.923702 1418.74928 0.19563 9.2713E-05 -0.8721 -0.00041331 -0.67647 -0.0003206 474.2577411339795 55.116 0.23788 55.047 54.859 55.097 -0.068737 17 11 2 0 0 0 0.70147 1 29919 29919 4.1166 1.4854 1 3488200 8966 13464 6183 6307 10290 10290 0.056650722621043315 ELVDAVELLDK 11 Unmodified _ELVDAVELLDK_ 0 0 0 REV__ENST00000509696.5_1_4:7062591-7066009:-|nuORF REV__ENST00000509696.5_1_4:7062591-7066009:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 622.34375 2 622.342643 1242.67073 NaN NaN NaN NaN NaN NaN NaN 17.562 1 14.975 14.475 15.475 -2.5866 0 0 0 0.94165 1 9195 9195 0.30703 0 1 + 8967 18661 6184 6308 10291 10291 0.05910498437992828 ELVFVNPEQQV 11 Unmodified _ELVFVNPEQQV_ 0 0 0 REV__ENSG00000261587|ENST00000696146|TMEM249 REV__ENSG00000261587|ENST00000696146|TMEM249 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.341064453125 2 651.340435 1300.66632 NaN NaN NaN NaN NaN NaN NaN 68.079 1 68.079 67.579 68.579 0 0 0 0 0.94201 1 37959 37959 1.0715 0 1 + 8968 24585 6185 6309 10292 10292 0.02801034015078585 ELVGATFEYLE 11 Unmodified _ELVGATFEYLE_ 0 0 0 REV__nc|ENSG00000173809|Q587J7|TDRD12 REV__nc|ENSG00000173809|Q587J7|TDRD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8145751953125 2 635.813719 1269.61288 NaN NaN NaN NaN NaN NaN NaN 79.267 1 79.267 78.767 79.767 0 0 0 0 0.94184 1 44034 44034 1.1933 0 1 + 8969 22750 6186 6310 10293 10293 -0.011137634874103242 ELVKMVWY 8 Unmodified _ELVKMVWY_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.283935546875 2 534.283346 1066.55214 0.73851 0.00039457 -0.38253 -0.00020438 0.35597 0.00019019 534.2829456653114 39.009 0.58524 34.558 34.361 34.946 -4.4509 55 36 2 0 0 0 0.48669 1 23024 23024 36.044 8.4154 1 33740000 8970 8195 6187 6311 10294 10294 0.02152472719308207 ELVNLLEY 8 Unmodified _ELVNLLEY_ 0 0 0 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7691650390625 2 496.768583 991.522613 1.0296 0.00051149 -0.083519 -4.149E-05 0.94612 0.00047 496.7685837130236 64.855 0.61913 58.679 58.47 59.089 -6.1757 97 34 4 0 0 0 0.62219 1 42223 42223 24.021 2.2739 1 138180000 + 8971 19443 6188 6312 10295 10295 0.026512319748235313 ELVQLVSPF 9 Unmodified _ELVQLVSPF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.296142578125 2 516.292225 1030.5699 0.51429 0.00026552 4.4162 0.00228 4.9305 0.0025456 516.2938989524289 72.131 0.71358 71.655 71.389 72.102 -0.47609 46 31 2 0 0 0 0.23158 1 39440 39440 20.454 3.5113 1 1890100 8972 7870 6189 6313 10296 10296 0.05583511245822592 ELVQMKHLY 9 Unmodified _ELVQMKHLY_ 0 0 0 REV__ENSG00000100557|ENST00000216445|CCDC198 REV__ENSG00000100557|ENST00000216445|CCDC198 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5424499511719 3 387.542598 1159.60597 1.4596 0.00056567 0.60933 0.00023614 2.069 0.00080181 387.543066577022 42.676 0.49451 37.992 37.747 38.241 -4.6846 84 32 4 0 0 0 0.23158 1 25674 25674 14.405 0.79051 1 81679000 + 8973 18079 6190 6314 10297 10297 0.03254645151037039 ELVQMKHLY 9 Unmodified _ELVQMKHLY_ 0 0 0 REV__ENSG00000100557|ENST00000216445|CCDC198 REV__ENSG00000100557|ENST00000216445|CCDC198 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 387.542598 1159.60597 0.039833 1.5437E-05 0.32578 0.00012625 0.36561 0.00014169 387.54266189978034 38.114 0.22689 37.843 37.719 37.946 -0.27133 -0.015981 -0.00027833 NaN 14.405 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1038600 + 8974 18079 6190 6314 0.03254645151037039 ELVRTYPTYN 10 Unmodified _ELVRTYPTYN_ 0 0 0 REV__ENST00000484300.1_1_15:57972974-57976693:+|nuORF REV__ENST00000484300.1_1_15:57972974-57976693:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.8822937011719 3 419.215427 1254.62445 1.423 0.00059654 2.6254 0.0011006 4.0484 0.0016972 419.21673130880816 93.981 0.18008 87.805 87.718 87.898 -6.1757 14 9 2 0 0 0 0.23609 1 62242 62242 5.4027 0.99656 1 8560400 + 8975 24596 6191 6315 10298 10298 0.007324783265858059 ELVTNIDLY 9 Unmodified _ELVTNIDLY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.28662109375 2 540.284597 1078.55464 0.16786 9.0694E-05 1.6441 0.0008883 1.812 0.000979 540.2857773320209 64.831 0.34145 64.831 64.672 65.013 0 42 15 4 0 0 0 0.34999 1 36255 36255 14.838 0 1 5675400 + 8976 22751 6192 6316 10299 10299 0.01850599657973362 ELVWMPSS 8 Unmodified _ELVWMPSS_ 0 0 0 ENSG00000160539|ENST00000372264|PLPP7 ENSG00000160539|ENST00000372264|PLPP7 ENSG00000160539|ENST00000372264|PLPP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7282104492188 2 474.728403 947.442254 0.594 0.00028199 0.52637 0.00024988 1.1204 0.00053187 474.72831173717947 86.829 0.35391 86.326 86.089 86.443 -0.50318 22 13 2 0 0 0 0.6895 1 47465 47465 18.135 4.6271 1 504780 8977 6733 6193 6317 10300 10300 -0.0335695261986757 ELWHRWCKQER 11 Unmodified _ELWHRWCKQER_ 0 0 0 REV__ENST00000439313.5_1_2:165693974-165697706:-|nuORF REV__ENST00000439313.5_1_2:165693974-165697706:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.5953369140625 3 524.261376 1569.7623 0.022813 1.196E-05 1.3067 0.00068506 1.3295 0.00069702 524.262496623612 18.22 0.24598 18.226 18.183 18.429 0.0060463 39 21 3 0 0 0 0.72131 1 9228 9228 2.2527 1.0379 1 3213800 + 8978 27061 6194 6318 10301 10301 0.00020903374183944834 ELWKKSKLF 9 Unmodified _ELWKKSKLF_ 0 0 0 ENST00000256544.7_2_15:34434362-34434515:-|nuORF ENST00000256544.7_2_15:34434362-34434515:-|nuORF ENST00000256544.7_2_15:34434362-34434515:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5693664550781 3 393.569253 1177.68593 0.5338 0.00021009 -0.8645 -0.00034024 -0.3307 -0.00013015 393.9031182350254 50.767 0.21479 50.713 50.57 50.784 -0.053871 18 10 2 0 0 0 0.49766 1 27447 27447 7.609 0.97858 1 1392000 8979 11181 6195 6319 10302 10302 0.10419454816496909 ELWKNPTAF 9 Unmodified _ELWKNPTAF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-4|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.28857421875 2 553.287474 1104.5604 0.51284 0.00028375 0.092331 5.1085E-05 0.60517 0.00033483 553.2873900467413 57.908 0.47185 57.418 57.288 57.76 -0.48974 57 22 5 0 0 0 0.044011 1 31539 31539 47.749 25.012 1 11821000 8980 8480 6196 6320 10303 10303 0.012297429602767807 ELWKNPTAF 9 Unmodified _ELWKNPTAF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-4|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2882690429688 2 553.287474 1104.5604 0.87444 0.00048382 0.71114 0.00039347 1.5856 0.00087728 553.2878122192299 57.551 0.33564 57.485 57.319 57.655 -0.066036 46 16 4 0 0 0 0.023481 1 31341 31341 60.074 27.288 1 12699000 8981 8480 6196 6320 10304 10304 0.012297429602767807 ELWKNPTAF 9 Unmodified _ELWKNPTAF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C;nc|ENSG00000175063|O00762-4|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2874755859375 2 553.287474 1104.5604 1.4067 0.00077833 -1.8913 -0.0010464 -0.48455 -0.00026809 553.2859664068548 63.999 0.60674 57.824 57.579 58.186 -6.1757 57 32 2 0 0 0 0.011671 1 41399 41399 75.761 48.877 1 109190000 8982 8480 6196 6320 10305 10305 0.012297429602767807 ELWLEREVF 9 Unmodified _ELWLEREVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.8193359375 2 610.819138 1219.62372 NaN NaN NaN NaN NaN NaN NaN 78.339 1 78.339 77.839 78.839 0 0 0 0 0.51965 1 43536 43536 15.248 8.5253 1 8983 4070 6197 6321 10306 10306 0.022696836775139673 ELWLEREVF 9 Unmodified _ELWLEREVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MSMS AL20221201_MKP_PDAC_01 4 610.820068359375 2 610.819138 1219.62372 NaN NaN NaN NaN NaN NaN NaN 95.46 1 89.284 88.784 89.784 -6.1757 0 0 0 0.014214 1 63230 63230 86.332 44.492 1 8984 4070 6197 6321 10307 10307 0.022696836775139673 ELYCGLQAF 9 Unmodified _ELYCGLQAF_ 0 0 0 REV__ENSG00000165983|ENST00000535784|PTER REV__ENSG00000165983|ENST00000535784|PTER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2470092773438 2 522.24696 1042.47937 0.43457 0.00022695 0.55134 0.00028794 0.98591 0.00051489 522.2470016169864 52.422 0.23266 51.989 51.851 52.083 -0.43367 20 11 2 0 0 0 0.2143 1 28323 28323 21.747 0 1 6207700 + 8985 22072 6198 6322 10308 10308 -0.040172810741296416 ELYDHDLF 8 Unmodified _ELYDHDLF_ 0 0 0 REV__ENST00000422197.2_1_1:51837944-51838202:+|nuORF REV__ENST00000422197.2_1_1:51837944-51838202:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2613525390625 2 526.24019 1050.46583 0.44604 0.00023472 -2.1502 -0.0011315 -1.7042 -0.00089682 526.2388461359178 77.992 0.29441 77.992 77.833 78.127 0 15 12 2 0 0 0 8.7369 1 43341 43341 9.3474 0.75416 1 695370 + 8986 18277 6199 6323 10309 10309 -0.05738815581730705 ELYDPEVNL 9 Unmodified _ELYDPEVNL_ 0 0 0 REV__nc|ENSG00000165300|O94991-2|SLITRK5 REV__nc|ENSG00000165300|O94991-2|SLITRK5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7650146484375 2 546.266404 1090.51826 0.34077 0.00018615 3.3214 0.0018143 3.6621 0.0020005 546.2673346366765 84.647 0.39272 84.147 84.092 84.485 -0.49961 21 16 2 0 0 0 0.20727 1 46423 46423 7.9102 3.1541 1 851810 + 8987 22003 6200 6324 10310 10310 -0.023382772387549267 ELYDYMFF 8 Unmodified _ELYDYMFF_ 0 0 0 ENST00000265085.9_1_5:173386035-173386122:+|nuORF ENST00000265085.9_1_5:173386035-173386122:+|nuORF ENST00000265085.9_1_5:173386035-173386122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2417602539062 2 564.241344 1126.46813 0.22343 0.00012607 -0.74052 -0.00041783 -0.51709 -0.00029176 564.2412620630843 72.134 0.41787 72.134 71.944 72.362 0 32 18 3 0 0 0 0.79982 1 40170 40170 9.3474 4.5914 1 1311600 8988 11325 6201 6325 10311 10311 -0.090041031682631 ELYESNKHF 9 Unmodified _ELYESNKHF_ 0 0 0 nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF nc|ENSG00000184313|Q68CQ1-2|MROH7 nc|ENSG00000184313|Q68CQ1-2|MROH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5202941894531 3 389.520739 1165.54039 -0.070997 -2.7655E-05 -0.21163 -8.2434E-05 -0.28263 -0.00011009 389.52064570988966 60.593 0.23915 60.104 60.01 60.249 -0.48932 21 11 3 0 0 0 0.39863 1 32980 32980 8.1555 5.1603 1 3056200 8989 9245 6202 6326 10312 10312 -0.03576052770335991 ELYEVQLHL 9 Unmodified _ELYEVQLHL_ 0 0 0 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3057861328125 2 572.305864 1142.59717 0.3812 0.00021816 1.4368 0.00082231 1.818 0.0010405 572.3067237076165 63.302 0.35946 63.302 63.096 63.456 0 32 16 3 0 0 0 0.2143 1 35256 35256 21.747 1.293 1 1932800 8990 10698 6203 6327 10313 10313 0.031579947861928304 ELYKARMQE 9 Unmodified _ELYKARMQE_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8662719726562 3 389.865741 1166.57539 0.46023 0.00017943 0.74218 0.00028935 1.2024 0.00046878 389.8660789256971 58.023 0.30717 51.996 51.905 52.212 -6.0275 23 16 2 0 0 0 0.23158 1 37196 37196 14.405 6.2499 1 23951000 + 8991 21382 6204 6328 10314 10314 -0.0012313323404669063 ELYKYRRI 8 Unmodified _ELYKYRRI_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1;REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5318603515625 3 380.888986 1139.64513 NaN NaN NaN NaN NaN NaN NaN 19.146 1 19.169 18.669 19.669 0.023106 0 0 0 0.97444 1 9640 9640 0.45834 0.31845 1 + 8992 17703;20152 6205 6329 10315 10315 0.08089113496885147 ELYKYRRI 8 Unmodified _ELYKYRRI_ 0 0 0 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1;REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8876342773438 3 380.888986 1139.64513 NaN NaN NaN NaN NaN NaN NaN 19.238 1 19.246 18.746 19.746 0.0078487 0 0 0 0.97444 1 9780 9780 1.8442 1.3383 1 + 8993 17703;20152 6205 6329 10316 10316 0.08089113496885147 ELYNEVKVE 9 Unmodified _ELYNEVKVE_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8607177734375 3 374.860761 1121.56045 NaN NaN NaN NaN NaN NaN NaN 20.486 1 20.486 19.986 20.986 0 0 0 0 0.85029 1 10311 10311 0.77653 0 1 8994 1552 6206 6330 10317 10317 0.004536981696446674 ELYNLMRLC 9 Unmodified _ELYNLMRLC_ 0 0 0 nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK nc|ENSG00000030304|O15146-3|MUSK nc|ENSG00000030304|O15146-3|MUSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7896118164062 2 577.788469 1153.56239 2.9252 0.0016902 -0.7065 -0.00040821 2.2187 0.001282 577.7877528860013 96.988 0.37854 96.981 96.772 97.151 -0.007019 42 14 4 0 0 0 0.1773 1 53810 53810 25.399 25.399 1 25181000 8995 585 6207 6331 10318 10318 -0.008252876177493818 ELYNNVLL 8 Unmodified _ELYNNVLL_ 0 0 0 ENST00000549922.1_1_12:72962420-73015055:+|nuORF ENST00000549922.1_1_12:72962420-73015055:+|nuORF ENST00000549922.1_1_12:72962420-73015055:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7442626953125 2 489.26875 976.522947 0.31275 0.00015302 -0.99045 -0.0004846 -0.67771 -0.00033158 489.2686481422431 69.036 0.28969 69.036 68.888 69.177 0 21 12 2 0 0 0 8.7369 1 38531 38531 8.5933 1.304 1 788030 8996 15156 6208 6332 10319 10319 0.03374651694673503 ELYNSQGV 8 Unmodified _ELYNSQGV_ 0 0 0 REV__nc|nan|Q53FE4-2|C4orf17 REV__nc|nan|Q53FE4-2|C4orf17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4381713867188 1 909.431238 908.423961 0.85776 0.00078007 2.5375 0.0023077 3.3953 0.0030878 909.4352781395457 100.34 0.079926 94.163 94.122 94.202 -6.1757 6 4 2 0 0 0 0.15594 1 67074 67074 85.272 20.037 1 12264000 + 8997 20373 6209 6333 10320 10320 -0.03391371270220134 ELYPAEPV 8 Unmodified _ELYPAEPV_ 0 0 0 nc|ENSG00000130052|Q92502|STARD8;ENSG00000130052|ENST00000374599|STARD8 nc|ENSG00000130052|Q92502|STARD8 nc|ENSG00000130052|Q92502|STARD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 917.4611206054688 1 917.461475 916.454199 0.058369 5.3551E-05 0.59321 0.00054425 0.65158 0.0005978 917.4623135912259 64.272 0.28519 64.272 64.1 64.386 0 20 12 2 0 0 0 0.48669 1 35817 35817 36.044 3.9272 1 1010400 8998 4175 6210 6334 10321 10321 -0.007370126050432191 ELYQLLLP 8 Unmodified _ELYQLLLP_ 0 0 0 REV__ENSG00000004777|ENST00000007510|ARHGAP33 REV__ENSG00000004777|ENST00000007510|ARHGAP33 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2782592773438 2 494.789318 987.564084 0.72054 0.00035652 0.096559 4.7776E-05 0.8171 0.00040429 494.78914610038476 101.9 0.094482 95.719 95.662 95.757 -6.1757 7 4 2 0 0 0 8.7369 1 68364 68364 28.487 10.352 1 9770600 + 8999 16949 6211 6335 10322 10322 0.06980412734139918 ELYSGKLTL 9 Unmodified _ELYSGKLTL_ 0 0 0 REV__ENST00000467359.5_1_10:54074467-54074503:+|nuORF REV__ENST00000467359.5_1_10:54074467-54074503:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.289306640625 2 512.289682 1022.56481 0.66052 0.00033838 0.082074 4.2046E-05 0.74259 0.00038042 512.2895909899277 60.504 0.30037 60.504 60.345 60.646 0 29 13 3 0 0 0 0.15471 1 33714 33714 27.629 2.6378 1 2227500 + 9000 27431 6212 6336 10323 10323 0.05443207383189019 ELYWFYYEQH 10 Unmodified _ELYWFYYEQH_ 0 0 0 REV__ENST00000519969.5_2_8:93966716-93977788:-|nuORF REV__ENST00000519969.5_2_8:93966716-93977788:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 739.3228149414062 2 739.324785 1476.63502 NaN NaN NaN NaN NaN NaN NaN 14.89 1 14.896 14.396 15.396 0.0057774 0 0 0 1.0024 1 7401 7401 0.40072 0.093686 1 + 9001 28269 6213 6337 10324 10324 -0.08423539019008786 EMAIVSDTIH 10 Unmodified _EMAIVSDTIH_ 0 0 0 ENST00000496790.1_1_7:102389906-102395456:+|nuORF;nc|ENSG00000222011|Q8N0U4-2|FAM185A;ENSG00000222011|ENST00000413034|FAM185A ENST00000496790.1_1_7:102389906-102395456:+|nuORF ENST00000496790.1_1_7:102389906-102395456:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2637939453125 2 558.273706 1114.53286 NaN NaN NaN NaN NaN NaN NaN 86.023 1 86.023 85.523 86.523 0 0 0 0 0.99248 1 47657 47657 1.4819 0 1 9002 10569 6214 6338 10325 10325 -0.0198252836228221 EMALSNIRPDY 11 Unmodified _EMALSNIRPDY_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 nc|ENSG00000134215|Q9UKW4-2|VAV3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8787841796875 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 60.033 1 60.033 59.533 60.533 0 0 0 0 0.91362 1 33472 33472 6.6235 3.9922 1 9003 4569 6215 6339 10326 10326 -0.02351782896471377 EMARRSGPAL 10 Unmodified _EMARRSGPAL_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.1941833496094 3 363.19408 1086.56041 0.25327 9.1988E-05 0.82552 0.00029982 1.0788 0.00039181 363.19432458219154 48.52 0.31031 48.476 48.32 48.631 -0.04369 37 15 3 0 0 0 0.62068 1 26165 26165 8.9762 0.23084 1 7688500 9004 7970 6216 6340 10327 10327 0.02059419688634989 EMCFDCMHGD 10 Unmodified _EMCFDCMHGD_ 0 0 0 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.1841430664062 2 594.184862 1186.35517 0.071464 4.2463E-05 -1.573 -0.00093464 -1.5015 -0.00089217 594.1845744430619 80.414 0.47362 80.414 80.118 80.592 0 57 22 3 0 0 0 0.72196 2 44546 44546;44645 0.45834 0.093686 1 1152900 9005 5796 6217 6341 10328;10329 10328 -0.23055186219767165 EMCSFPRV 8 Unmodified _EMCSFPRV_ 0 0 0 ENST00000508797.1_1_5:179035408-179036813:+|nuORF ENST00000508797.1_1_5:179035408-179036813:+|nuORF ENST00000508797.1_1_5:179035408-179036813:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.1988220214844 2 484.720055 967.425558 0.61904 0.00030006 2.8319 0.0013727 3.4509 0.0016727 484.721655869339 53.799 0.21149 53.799 53.665 53.876 0 13 9 2 0 0 0 8.7369 1 29804 29804 8.5933 0.68312 1 955150 9006 14567 6218 6342 10330 10330 -0.05945776777480205 EMDDKRRKQTF 11 Unmodified _EMDDKRRKQTF_ 0 0 0 REV__ENSG00000090857|ENST00000288050|PDPR REV__ENSG00000090857|ENST00000288050|PDPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2454223632812 3 485.245392 1452.71435 -0.35756 -0.0001735 1.0316 0.0005006 0.67409 0.0003271 485.58031555570784 17.883 0.048357 17.883 17.849 17.898 0 7 5 2 0 0 0 0.73992 1 8850 8850 0.50596 0 1 727350 + 9007 17870 6219 6343 10331 10331 0.006097846634702364 EMDNHFNC 8 Unmodified _EMDNHFNC_ 0 0 0 ENST00000581230.5_1_17:62496972-62497050:-|nuORF ENST00000581230.5_1_17:62496972-62497050:-|nuORF ENST00000581230.5_1_17:62496972-62497050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.1793518066406 2 505.178752 1008.34295 0.77565 0.00039184 -0.35496 -0.00017932 0.42069 0.00021252 505.17860684817634 54.821 0.34054 54.821 54.664 55.005 0 44 14 4 0 0 0 0.80383 1 30440 30440 4.3292 1.44 1 12112000 9008 15562 6220 6344 10332 10332 -0.16088718576293104 EMDQKWSNLN 10 Unmodified _EMDQKWSNLN_ 0 0 0 REV__ENSG00000196189|ENST00000368285|SEMA4A REV__ENSG00000196189|ENST00000368285|SEMA4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.7890014648438 2 632.78497 1263.55539 NaN NaN NaN NaN NaN NaN NaN 75.72 1 75.243 74.743 75.743 -0.47714 0 0 0 0.97855 1 41451 41451 2.9952 0 1 + 9009 23803 6221 6345 10333 10333 -0.06584928964616665 EMDTLNEEVV 10 Unmodified _EMDTLNEEVV_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7659912109375 2 589.765911 1177.51727 NaN NaN NaN NaN NaN NaN NaN 51.529 1 51.529 51.029 52.029 0 0 0 0 0.80141 1 28462 28462 12.241 1.4167 1 9010 4239 6222 6346 10334 10334 -0.0643885966999278 EMDYFHVFF 9 Unmodified _EMDYFHVFF_ 0 0 0 REV__nc|ENSG00000110321|P78344-2|EIF4G2 REV__nc|ENSG00000110321|P78344-2|EIF4G2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.1805725097656 3 412.179437 1233.51648 NaN NaN NaN NaN NaN NaN NaN 18.389 1 18.395 17.895 18.895 0.0060463 0 0 0 0.85261 1 9318 9318 1.1933 0.41681 1 + 9011 18702 6223 6347 10335 10335 -0.09093609528372326 EMEDCMFD 8 Unmodified _EMEDCMFD_ 0 0 0 REV__ENSG00000120438|ENST00000321394|TCP1 REV__ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.1619262695312 2 510.161379 1018.3082 -1.0375 -0.00052927 1.0012 0.00051078 -0.036258 -1.8498E-05 510.161901710691 32.442 0.3766 32.442 32.242 32.618 0 42 22 2 0 0 0 0.80992 1 17019 17019 0.69038 0.69038 1 13491000 + 9012 19242 6224 6348 10336 10336 -0.20021722499257066 EMEDDYDY 8 Unmodified _EMEDDYDY_ 0 0 0 nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.1852416992188 2 540.179137 1078.34372 NaN NaN NaN NaN NaN NaN NaN 53.662 1 53.662 53.162 54.162 0 0 0 0 0.97444 1 29758 29758 2.8892 0.31174 1 9013 8991 6225 6349 10337 10337 -0.19231645446257062 EMEEKYYRF 9 Unmodified _EMEEKYYRF_ 0 0 0 nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.1990661621094 3 432.197268 1293.56997 1.72 0.00074339 0.91919 0.00039727 2.6392 0.0011407 432.1977490164021 41.832 0.25011 37.224 37.095 37.345 -4.6079 34 15 3 0 0 0 0.044011 1 25167 25167 43.982 36.945 1 8507900 9014 7938 6226 6350 10338 10338 -0.06506856816531581 EMEKEYEVIR 10 Unmodified _EMEKEYEVIR_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.8874206542969 3 442.551711 1324.6333 0.75006 0.00033194 0.75621 0.00033466 1.5063 0.0006666 442.55207391618757 81.125 0.41989 80.632 80.465 80.884 -0.49247 120 25 6 0 0 0 0.64183 3 44376 44376;44428;44475 8.9762 1.9392 1 20691000 + 9015 22258 6227 6351 10339;10340;10341 10339 -0.016029160992729885 EMEKEYEVIR 10 Unmodified _EMEKEYEVIR_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.5524291992188 3 442.551711 1324.6333 0.75006 0.00033194 0.75621 0.00033466 1.5063 0.0006666 442.55207391618757 81.125 0.41989 80.632 80.465 80.884 -0.49247 120 25 6 0 0 0 0.23966 1 44475 44475 3.3196 0.88486 1 20691000 + 9016 22258 6227 6351 10342 10342 -0.016029160992729885 EMEKEYEVIR 10 Unmodified _EMEKEYEVIR_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.552734375 3 442.551711 1324.6333 0.39062 0.00017287 1.1313 0.00050068 1.522 0.00067355 442.55215145271137 80.198 0.93542 80.256 79.98 80.915 0.057587 195 42 6 0 0 0 0.67413 4 44227 44227;44325;44540;44652 5.7834 1.3773 1 187570000 + 9017 22258 6227 6351 10343;10344;10345;10346 10343 -0.016029160992729885 EMEKEYEVIR 10 Unmodified _EMEKEYEVIR_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 442.551711 1324.6333 0.39062 0.00017287 1.1313 0.00050068 1.522 0.00067355 442.55215145271137 80.198 0.93542 80.256 79.98 80.915 0.057587 -0.18824 0.00026547 NaN 8.9762 195 42 6 NaN NaN NaN NaN 0 NaN NaN 0 187570000 + 9018 22258 6227 6351 -0.016029160992729885 EMELEPEEDF 10 Unmodified _EMELEPEEDF_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.2560424804688 2 634.255376 1266.4962 0.030261 1.9193E-05 2.6588 0.0016864 2.6891 0.0017056 634.2577523260912 70.757 0.45764 70.28 70.131 70.589 -0.47735 50 22 3 0 0 0 0.66569 1 38777 38777 6.7232 0.99131 1 4086400 + 9019 23576 6228 6352 10347 10347 -0.12638869769489247 EMEPTEYEF 9 Unmodified _EMEPTEYEF_ 0 0 0 REV__nc|ENSG00000163565|Q16666-3|IFI16 REV__nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.6835327148438 2 587.73408 1173.45361 0.72494 0.00042607 1.5951 0.00093751 2.3201 0.0013636 588.2361741849703 81.179 0.47207 80.686 80.619 81.091 -0.49247 41 27 2 0 0 0 0.58865 1 44621 44621 2.0598 1.2661 1 3754400 + 9020 21786 6229 6353 10348 10348 -0.1261822010708329 EMESLSYAM 9 Unmodified _EMESLSYAM_ 0 0 0 REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7194213867188 2 530.719918 1059.42528 0.096875 5.1413E-05 -0.82341 -0.000437 -0.72654 -0.00038559 530.7193449004523 66.421 0.3931 65.937 65.757 66.15 -0.48323 67 19 4 0 0 0 0.48152 1 36317 36317 8.5933 1.304 1 27286000 + 9021 20114 6230 6354 10349 10349 -0.10205241288008438 EMFAAHLRC 9 Unmodified _EMFAAHLRC_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2;ENST00000480971.5_1_13:113839853-113862948:-|nuORF;ENST00000491548.5_1_13:113845184-113862948:-|nuORF;ENST00000475433.5_1_13:113838773-113862921:-|nuORF nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MSMS AL20221201_MKP_PDAC_01 4 539.2523803710938 2 539.252054 1076.48956 NaN NaN NaN NaN NaN NaN NaN 100.37 1 94.193 93.693 94.693 -6.1757 0 0 0 0.46757 1 67097 67097 16.942 0.79319 1 9022 3934 6231 6355 10350 10350 -0.04562996620529702 EMFATHVP 8 Unmodified _EMFATHVP_ 0 0 0 REV__ENSG00000108786|ENST00000585807|HSD17B1 REV__ENSG00000108786|ENST00000585807|HSD17B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2196655273438 2 466.220746 930.426938 NaN NaN NaN NaN NaN NaN NaN 66.096 1 65.613 65.113 66.113 -0.48323 0 0 0 0.88073 1 36082 36082 19.439 1.304 1 + 9023 18627 6232 6356 10351 10351 -0.04105819417065959 EMFDHAYGNY 10 Unmodified _EMFDHAYGNY_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2905883789062 2 623.745313 1245.47607 0.064278 4.0093E-05 -2.458 -0.0015331 -2.3937 -0.0014931 623.7447503125643 55.188 0.42971 55.188 54.876 55.305 0 44 18 4 0 0 0 0.23634 1 30668 30668 6.7232 3.1267 1 2019900 9024 3218 6233 6357 10352 10352 -0.1368457591877359 EMFMDMAMF 9 Unmodified _EMFMDMAMF_ 0 0 0 ENST00000540889.1_1_12:131283048-131285998:-|nuORF;nc|ENSG00000111450|P32856-3|STX2;nc|ENSG00000111450|P32856-2|STX2;ENSG00000111450|ENST00000392373|STX2 ENST00000540889.1_1_12:131283048-131285998:-|nuORF ENST00000540889.1_1_12:131283048-131285998:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.716796875 2 576.715267 1151.41598 0.49574 0.0002859 0.62853 0.00036248 1.1243 0.00064838 576.7157081317549 67.823 0.50338 67.823 67.621 68.124 0 81 24 4 0 0 0 0.58865 1 37947 37947 2.0598 0 1 4857100 9025 2791 6234 6358 10353 10353 -0.1536704916952658 EMFTHMNSL 9 Unmodified _EMFTHMNSL_ 0 0 0 nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A;ENST00000395894.6_1_17:15619323-15620601:+|nuORF;nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000187607|Q9HBT8-2|ZNF286A;nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000187607|Q9HBT8-2|ZNF286A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2425537109375 2 555.241352 1108.46815 0.56645 0.00031452 0.58678 0.0003258 1.1532 0.00064032 555.2416419080608 98.202 0.24654 98.009 97.853 98.099 -0.19321 14 8 2 0 0 0 0.58865 1 53639 53639 2.0598 0.21551 1 790250 9026 9570;16637 6235 6359 10354 10354 -0.08174426439904892 EMGEQFYHSC 10 Unmodified _EMGEQFYHSC_ 0 0 0 ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENST00000445194.2_1_20:29873705-29874359:-|nuORF ENST00000445194.2_1_20:29873705-29874359:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8233032226562 3 410.823324 1229.44814 0.68008 0.00027939 -0.36973 -0.00015189 0.31035 0.0001275 410.82300713277573 32.826 0.30058 28.969 28.814 29.115 -3.8562 38 16 3 0 0 0 0.67459 1 18787 18787 5.4027 3.15 1 16861000 9027 13453 6236 6360 10355 10355 -0.15740222170506968 EMHQSVLLFP 10 Unmodified _EMHQSVLLFP_ 0 0 0 REV__ENST00000369014.9_1_1:150595073-150595295:-|nuORF REV__ENST00000369014.9_1_1:150595073-150595295:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8084106445312 2 600.807716 1199.60088 0.08298 4.9855E-05 0.72873 0.00043782 0.81171 0.00048768 601.3095461834209 80.952 0.67951 74.776 74.35 75.029 -6.1757 89 37 3 0 0 0 0.27276 1 53036 53036 29.082 2.1979 1 38699000 + 9028 26026 6237 6361 10356 10356 0.009063412883961064 EMIDWSYEWWT 11 Unmodified _EMIDWSYEWWT_ 0 0 0 REV__nc|ENSG00000156026|Q8NE86-2|MCU REV__nc|ENSG00000156026|Q8NE86-2|MCU MSMS AL20221201_MKP_PDAC_01 4 773.3219604492188 2 773.321385 1544.62822 NaN NaN NaN NaN NaN NaN NaN 58.202 1 52.174 51.674 52.674 -6.0275 0 0 0 0.79635 1 37283 37283 12.241 8.9593 1 + 9029 29719 6238 6362 10357 10357 -0.12231219961881834 EMIHRFWYNYR 11 Unmodified _EMIHRFWYNYR_ 0 0 0 nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.794921875 3 538.925994 1613.75615 1.0114 0.00054509 -2.403 -0.001295 -1.3915 -0.00074994 538.9247428250858 66.438 0.21919 66.447 66.342 66.561 0.0095596 15 10 2 0 0 0 0.30558 1 36487 36487 2.4348 1.9288 1 2466900 9030 8113 6239 6363 10358 10358 -0.02617614857308581 EMIPELYL 8 Unmodified _EMIPELYL_ 0 0 0 ENST00000493521.5_1_3:181457683-181457800:+|nuORF ENST00000493521.5_1_3:181457683-181457800:+|nuORF ENST00000493521.5_1_3:181457683-181457800:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2568054199219 2 504.259536 1006.50452 -0.62735 -0.00031635 -3.854 -0.0019434 -4.4813 -0.0022598 504.25794846207447 22.113 0.10643 22.136 22.097 22.204 0.022896 5 4 2 0 0 0 0.80232 1 11258 11258 5.2307 2.6532 1 317980 9031 14314 6240 6364 10359 10359 0.0015277372845048376 EMKATESGAQS 11 Unmodified _EMKATESGAQS_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1741638183594 3 380.173011 1137.4972 NaN NaN NaN NaN NaN NaN NaN 63.32 1 63.32 62.82 63.82 0 0 0 0 0.94216 1 35319 35319 0.32927 0 1 9032 275 6241 6365 10360 10360 -0.06604610609929296 EMKHHEMAL 9 Unmodified _EMKHHEMAL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8440856933594 3 375.844171 1124.51068 1.0407 0.00039115 -1.5328 -0.00057608 -0.49205 -0.00018493 375.8439083939638 22.5 0.3021 19.722 19.554 19.857 -2.7784 38 16 3 0 0 0 0.55144 1 12178 12178 2.4985 0 1 3606700 + 9033 22306 6242 6366 10361 10361 -0.04659031311689432 EMKIKEEGY 9 Unmodified _EMKIKEEGY_ 0 0 0 ENSG00000198865|ENST00000361970|CCDC152 ENSG00000198865|ENST00000361970|CCDC152 ENSG00000198865|ENST00000361970|CCDC152 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2327880859375 2 563.776082 1125.53761 0.30663 0.00017287 1.3037 0.00073498 1.6103 0.00090785 563.7768858809194 78.42 0.24709 78.42 78.222 78.469 0 14 11 2 0 0 0 0.21819 1 43566 43566 2.0598 0 1 368620 9034 10179 6243 6367 10362 10362 -0.020136442194825577 EMKRHATKR 9 Unmodified _EMKRHATKR_ 0 0 0 REV__ENST00000518895.1_1_8:621944-623322:-|nuORF REV__ENST00000518895.1_1_8:621944-623322:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2176208496094 3 386.217108 1155.62949 0.63519 0.00024532 0.24063 9.2935E-05 0.87581 0.00033825 386.2171410547782 49.466 0.65777 49.417 49.065 49.723 -0.048828 77 32 3 0 0 0 0.58145 1 26609 26609 2.4985 0.063701 1 5267000 + 9035 28254 6244 6368 10363 10363 0.05790503708203687 EMLDWDEVI 9 Unmodified _EMLDWDEVI_ 0 0 0 REV__ENSG00000115091|ENST00000263238|ACTR3 REV__ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8440856933594 3 383.842602 1148.50598 1.3368 0.00051312 0.70588 0.00027095 2.0427 0.00078407 383.84300379029025 69.086 1.7348 62.91 62.028 63.763 -6.1757 121 97 2 0 0 0 0.49272 3 44936 44936;45354;45597 4.897 1.5774 1 39528000 + 9036 18951 6245 6369 10364;10365;10366 10364 -0.06233636973456669 EMLDWDEVI 9 Unmodified _EMLDWDEVI_ 0 0 0 REV__ENSG00000115091|ENST00000263238|ACTR3 REV__ENSG00000115091|ENST00000263238|ACTR3 MSMS AL20221201_MKP_PDAC_01 4 383.8429565429688 3 383.842602 1148.50598 NaN NaN NaN NaN NaN NaN NaN 70.091 1 63.915 63.415 64.415 -6.1757 0 0 0 0.7453 1 45785 45785 4.897 1.31 1 + 9037 18951 6245 6369 10367 10367 -0.06233636973456669 EMLRYKEVCYY 11 Unmodified _EMLRYKEVCYY_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20221201_MKP_PDAC_01 4 748.8497314453125 2 748.849255 1495.68396 0.89793 0.00067241 -0.45874 -0.00034353 0.43919 0.00032889 748.8488714829076 68.724 0.59956 62.548 62.223 62.822 -6.1757 115 33 5 0 0 0 0.6889 1 44859 44859 5.2969 3.815 1 190960000 9038 4640 6246 6370 10368 10368 -0.04405710045898559 EMMKVVQVY 9 2 Oxidation (M) _EM(Oxidation (M))M(Oxidation (M))KVVQVY_ EM(1)M(1)KVVQVY EM(44)M(44)KVVQVY 0 0 2 ENSG00000197323|ENST00000358465|TRIM33;ENST00000478032.1_1_1:114940480-114942198:-|nuORF ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7805786132812 2 579.78031 1157.54607 0.014123 8.1883E-06 0.010483 6.078E-06 0.024606 1.4266E-05 579.7803595896892 31.61 0.41814 31.61 31.482 31.9 0 36 20 2 0 0 0 0.05447 1 16458 16458 43.858 28.011 1 4587700 9039 9940 6247 6371 10369 10369 1608;1609 -0.026404135744996893 EMMLKFYSF 9 2 Oxidation (M) _EM(Oxidation (M))M(Oxidation (M))LKFYSF_ EM(1)M(1)LKFYSF EM(46)M(46)LKFYSF 0 0 2 nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2748413085938 2 614.27486 1226.53517 0.42411 0.00026052 0.011666 7.1664E-06 0.43578 0.00026769 614.2748184276915 63.431 0.52897 62.945 62.642 63.171 -0.48617 54 23 3 0 0 0 0.047788 1 34632 34632 45.7 30.451 1 2520900 9040 2529 6248 6372 10370 10370 433;434 -0.06903815948817282 EMMLKFYSF 9 2 Oxidation (M) _EM(Oxidation (M))M(Oxidation (M))LKFYSF_ 0 0 2 nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 614.27486 1226.53517 0.57813 0.00035513 0.49912 0.0003066 1.0772 0.00066173 614.2750877605606 62.995 0.41081 62.973 62.771 63.182 -0.021614 0.01421 0.00034081 NaN 45.7 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1856200 9041 2529 6248 6372 433;434 -0.06903815948817282 EMMLQNLM 8 Unmodified _EMMLQNLM_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2516479492188 2 505.229399 1008.44424 1.1807 0.00059654 1.5516 0.00078393 2.7324 0.0013805 505.2294416199014 46.198 0.10306 46.198 46.149 46.252 0 6 4 2 0 0 0 8.7369 1 25269 25269 9.3474 0.75416 1 779510 9042 4971 6249 6373 10371 10371 -0.05963983197932521 EMNSYKQFAMN 11 Unmodified _EMNSYKQFAMN_ 0 0 0 REV__ENSG00000021776|ENST00000156471|AQR REV__ENSG00000021776|ENST00000156471|AQR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 681.2957763671875 2 681.79448 1361.57441 -0.43758 -0.00029834 2.7837 0.0018979 2.3461 0.0015996 681.7967980263312 23.832 0.30212 23.832 23.714 24.016 0 37 14 4 0 0 0 0.30582 1 12247 12247 1.0715 0.10919 1 1504800 + 9043 17111 6250 6374 10372 10372 -0.09191715665247102 EMPLEDCKEAC 11 Unmodified _EMPLEDCKEAC_ 0 0 0 ENSG00000185219|ENST00000396077|ZNF445 ENSG00000185219|ENST00000396077|ZNF445 ENSG00000185219|ENST00000396077|ZNF445 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.2535400390625 2 634.253799 1266.49305 0.3088 0.00019586 -1.7058 -0.0010819 -1.397 -0.00088604 634.2527173489447 61.015 0.3082 61.015 60.885 61.193 0 21 12 2 0 0 0 0.71036 1 34032 34032 3.2813 0.28607 1 766380 9044 9345 6251 6375 10373 10373 -0.129541594194734 EMRGAKSN 8 Oxidation (M) _EM(Oxidation (M))RGAKSN_ EM(1)RGAKSN EM(42)RGAKSN 0 0 1 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7182006835938 2 454.716359 907.418164 NaN NaN NaN NaN NaN NaN NaN 38.269 1 38.269 37.769 38.769 0 0 0 0 0.47897 1 20428 20428 42.095 6.0504 1 + 9045 19419 6252 6376 10374 10374 1838 -0.03924793053533904 EMRGAKSN 8 Unmodified _EMRGAKSN_ 0 0 0 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MSMS AL20221201_MKP_PDAC_01 4 446.7210693359375 2 446.718901 891.42325 NaN NaN NaN NaN NaN NaN NaN 57.887 1 51.86 51.36 52.36 -6.0275 0 0 0 0.45366 1 37055 37055 46.021 8.047 1 + 9046 19419 6252 6377 10375 10375 -0.026804891909250728 EMRLLSQDFH 10 Unmodified _EMRLLSQDFH_ 0 0 0 ENST00000563394.1_1_17:42299806-42300223:+|nuORF ENST00000563394.1_1_17:42299806-42300223:+|nuORF ENST00000563394.1_1_17:42299806-42300223:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.18798828125 3 425.876529 1274.60776 -0.052466 -2.2344E-05 2.21 0.0009412 2.1576 0.00091886 426.2118519131595 37.573 0.13643 37.59 37.498 37.634 0.01704 9 6 2 0 0 0 0.69377 1 19953 19953 1.7423 0 1 1320000 9047 15364 6253 6378 10376 10376 -0.0185634583101546 EMRVMHALTF 10 Unmodified _EMRVMHALTF_ 0 0 0 REV__ENST00000510531.5_1_5:6645338-6652038:+|nuORF REV__ENST00000510531.5_1_5:6645338-6652038:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.3115234375 2 617.807193 1233.59983 0.54586 0.00033723 1.8636 0.0011514 2.4095 0.0014886 617.8082673948172 89.789 0.26791 89.287 89.196 89.464 -0.50171 23 13 2 0 0 0 0.69917 1 49090 49090 2.9952 0.93549 1 808050 + 9048 28148 6254 6379 10377 10377 -0.00762196352184219 EMSKEWFLF 9 Oxidation (M) _EM(Oxidation (M))SKEWFLF_ EM(1)SKEWFLF EM(42)SKEWFLF 0 0 1 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.787353515625 2 616.78645 1231.55835 0.67322 0.00041524 -0.0089346 -5.5107E-06 0.66429 0.00040972 616.786460292824 83.231 0.22989 83.294 83.182 83.412 0.063171 14 8 2 0 0 0 0.06294 1 46049 46049 41.84 11.203 1 4592200 9049 7956 6255 6380 10378 10378 1356 -0.04817053839838081 EMSKEWFLF 9 Oxidation (M) _EM(Oxidation (M))SKEWFLF_ EM(1)SKEWFLF EM(42)SKEWFLF 0 0 1 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7882690429688 2 616.78645 1231.55835 1.3585 0.00083791 -0.12279 -7.5736E-05 1.2357 0.00076218 616.7864685485155 98.218 0.21143 92.042 91.908 92.12 -6.1757 31 13 3 0 0 0 0.06294 1 65092 65092 41.84 11.203 1 41048000 9050 7956 6255 6380 10379 10379 1356 -0.04817053839838081 EMSKEWFLF 9 Unmodified _EMSKEWFLF_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7869262695312 2 608.788992 1215.56343 0.79056 0.00048129 -1.1859 -0.00072198 -0.39536 -0.00024069 608.7880539294451 99.321 0.10851 93.146 93.066 93.174 -6.1757 14 6 3 0 0 0 0.044011 1 66101 66101 47.749 19.262 1 47979000 9051 7956 6255 6381 10380 10380 -0.035727499772292504 EMTESTDYLY 10 Unmodified _EMTESTDYLY_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2545166015625 2 626.257919 1250.50128 0.40267 0.00025218 -3.1071 -0.0019459 -2.7045 -0.0016937 626.2558819184339 49.18 0.25424 49.18 49.042 49.296 0 23 11 3 0 0 0 0.5905 1 27046 27046 11.64 0.81637 1 2979800 9052 5044 6256 6382 10381 10381 -0.11394565906880416 EMTRIIWQF 9 Oxidation (M) _EM(Oxidation (M))TRIIWQF_ EM(1)TRIIWQF EM(50)TRIIWQF 0 0 1 nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 nc|ENSG00000182054|P48735-2|IDH2 nc|ENSG00000182054|P48735-2|IDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.31591796875 2 620.313166 1238.61178 0.816 0.00050617 -1.0662 -0.00066137 -0.25018 -0.00015519 620.312933609855 71.804 0.31052 71.843 71.664 71.974 0.039024 35 14 4 0 0 0 0.040683 1 39518 39518 49.554 25.534 1 2735800 9053 9012 6257 6383 10382 10382 1509 0.0020174366268292943 EMVQKIVNSV 10 Unmodified _EMVQKIVNSV_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.8107299804688 2 573.812999 1145.61144 NaN NaN NaN NaN NaN NaN NaN 56.221 1 55.736 55.236 56.236 -0.48554 0 0 0 0.6416 1 30520 30520 19.362 1.9193 1 9054 9690 6258 6384 10383 10383 0.04446323942829622 EMVRGGFP 8 Unmodified _EMVRGGFP_ 0 0 0 ENST00000483652.5_1_22:50319209-50319452:+|nuORF ENST00000483652.5_1_22:50319209-50319452:+|nuORF ENST00000483652.5_1_22:50319209-50319452:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 892.4361572265625 1 892.434549 891.427273 -0.21586 -0.00019264 0.729 0.00065058 0.51314 0.00045794 892.4353230226295 57.966 0.51068 51.939 51.681 52.192 -6.0275 48 28 2 0 0 0 0.67481 2 37001 37001;37134 19.439 0 1 34906000 9055 14134 6259 6385 10384;10385 10384 -0.022783996972066234 EMVVMTDCLL 10 Unmodified _EMVVMTDCLL_ 0 0 0 ENSG00000204510|ENST00000697200|PRAMEF7;ENSG00000182330|ENST00000357367|PRAMEF8 ENSG00000204510|ENST00000697200|PRAMEF7 ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2677001953125 2 577.268721 1152.52289 0.32533 0.0001878 -1.989 -0.0011482 -1.6637 -0.00096039 577.2669220374065 83.811 0.33648 83.811 83.633 83.97 0 45 18 3 0 0 0 0.66569 1 46418 46418 6.7232 2.7788 1 2024600 9056 9047 6260 6386 10386 10386 -0.047271756835016276 EMYFILEAI 9 Unmodified _EMYFILEAI_ 0 0 0 REV__ENSG00000061676|ENST00000361354|NCKAP1 REV__ENSG00000061676|ENST00000361354|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7860107421875 2 564.785918 1127.55728 0.92351 0.00052158 -0.82485 -0.00046586 0.098654 5.5718E-05 564.7845915449519 81.414 0.22482 80.922 80.815 81.04 -0.49247 22 9 3 0 0 0 0.52844 1 44600 44600 0.6015 0 1 1031600 + 9057 17333 6261 6387 10387 10387 -0.0013926820874985424 EMYLKKQW 8 Unmodified _EMYLKKQW_ 0 0 0 ENST00000263239.6_1_2:118575052-118575118:+|nuORF ENST00000263239.6_1_2:118575052-118575118:+|nuORF ENST00000263239.6_1_2:118575052-118575118:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.319091796875 2 563.291702 1124.56885 0.73601 0.00041459 1.6979 0.00095643 2.4339 0.001371 563.2929010361763 40.467 0.37937 40.17 39.963 40.343 -0.29716 37 17 3 0 0 0 8.7369 1 21465 21465 38.151 24.643 1 5338000 9058 11283 6262 6388 10388 10388 0.011549736052529624 ENAFMLIVY 9 Unmodified _ENAFMLIVY_ 0 0 0 ENST00000464458.1_1_2:95770271-95772347:-|nuORF ENST00000464458.1_1_2:95770271-95772347:-|nuORF ENST00000464458.1_1_2:95770271-95772347:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2783203125 2 550.27826 1098.54197 0.4846 0.00026666 -3.7202 -0.0020471 -3.2356 -0.0017805 550.2765763446268 68.801 0.30046 68.801 68.634 68.934 0 24 12 3 0 0 0 0.46501 1 38325 38325 9.3831 0.035688 1 1252500 9059 13719 6263 6389 10389 10389 -0.0033613500593219214 ENAIEWSVK 9 Unmodified _ENAIEWSVK_ 0 0 0 nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1 nc|ENSG00000214517|Q9Y570-2|PPME1 nc|ENSG00000214517|Q9Y570-2|PPME1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7943725585938 2 538.274564 1074.53457 0.20726 0.00011156 -2.5018 -0.0013466 -2.2945 -0.0012351 538.7744851263675 62.594 0.23622 62.594 62.468 62.704 0 20 10 3 0 0 0 0.16895 1 34852 34852 24.021 1.2843 1 1334100 9060 10496 6264 6390 10390 10390 0.0002884871801143163 ENALKAASGT 10 Unmodified _ENALKAASGT_ 0 0 0 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 ENSG00000112936|ENST00000313164|C7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2537841796875 2 481.251089 960.487624 NaN NaN NaN NaN NaN NaN NaN 62.349 1 62.349 61.849 62.849 0 0 0 0 0.47175 1 34774 34774 27.629 0.74515 1 9061 2930 6265 6391 10391 10391 0.005799891668516466 ENARATDSVS 10 Unmodified _ENARATDSVS_ 0 0 0 ENST00000532085.1_1_11:118896547-118896784:-|nuORF ENST00000532085.1_1_11:118896547-118896784:-|nuORF ENST00000532085.1_1_11:118896547-118896784:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7423095703125 2 525.246535 1048.47852 -0.15879 -8.3403E-05 -0.1408 -7.3952E-05 -0.29958 -0.00015736 525.2467680434765 29.798 0.60165 29.798 29.662 30.263 0 103 31 4 0 0 0 0.57893 1 15576 15576 12.241 12.241 1 154610000 9062 14921 6266 6392 10392 10392 -0.0437840418946962 ENDALYEYLRQ 11 Unmodified _ENDALYEYLRQ_ 0 0 0 ENST00000481405.1_1_3:45038716-45077413:+|nuORF;ENSG00000163815|ENST00000296130|CLEC3B;CON__Q2KIS7 ENST00000481405.1_1_3:45038716-45077413:+|nuORF ENST00000481405.1_1_3:45038716-45077413:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.335693359375 2 707.335881 1412.65721 -0.15964 -0.00011292 0.82159 0.00058114 0.66195 0.00046822 707.3365512696645 43.403 0.24479 43.403 43.262 43.507 0 38 11 4 0 0 0 0.6704 1 23535 23535 12.175 12.175 1 27752000 + 9063 192 6267 6393 10393 10393 -0.032613593412634145 ENDDASTEFY 10 Unmodified _ENDDASTEFY_ 0 0 0 REV__nc|ENSG00000084234|Q06481-5|APLP2 REV__nc|ENSG00000084234|Q06481-5|APLP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7283325195312 2 595.72784 1189.44113 0.2574 0.00015334 0.12066 7.1882E-05 0.37806 0.00022522 595.7280591787369 51.593 0.29876 51.593 51.431 51.73 0 31 13 3 0 0 0 0.52097 1 28480 28480 15.248 3.6082 1 6433500 + 9064 17733 6268 6394 10394 10394 -0.14601540245735123 ENDTEEEVF 9 Unmodified _ENDTEEEVF_ 0 0 0 REV__ENSG00000114446|ENST00000264538|IFT57 REV__ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7255859375 2 556.224933 1110.43531 0.45483 0.00025299 -2.4857 -0.0013826 -2.0309 -0.0011296 556.223228643455 79.741 0.27271 79.741 79.638 79.911 0 17 11 2 0 0 0 0.51218 1 44284 44284 6.7232 0.99131 1 448250 + 9065 18914 6269 6395 10395 10395 -0.11548638757403751 ENDVIETKK 9 Unmodified _ENDVIETKK_ 0 0 0 ENSG00000188729|ENST00000682035|OSTN ENSG00000188729|ENST00000682035|OSTN ENSG00000188729|ENST00000682035|OSTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.0286560058594 3 359.192511 1074.5557 -0.35375 -0.00012706 2.1647 0.00077753 1.8109 0.00065047 359.19314335195196 24.207 0.21408 24.207 24.037 24.251 0 13 11 2 0 0 0 0.21822 1 12333 12333 2.4985 0 1 810700 9066 9687 6270 6396 10396 10396 0.0214081402687043 ENDVVNLLY 9 Unmodified _ENDVVNLLY_ 0 0 0 REV__nc|ENSG00000119771|Q96CT2-2|KLHL29 REV__nc|ENSG00000119771|Q96CT2-2|KLHL29 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7981567382812 2 539.774396 1077.53424 0.84338 0.00045523 1.813 0.00097858 2.6563 0.0014338 539.7745361529555 60.292 0.65894 54.177 53.852 54.511 -6.1147 95 34 4 0 0 0 0.16785 1 38902 38902 23.148 1.4018 1 66872000 + 9067 19210 6271 6397 10397 10397 -0.0014257100183385774 ENEDMVPDAL 10 Unmodified _ENEDMVPDAL_ 0 0 0 nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1;ENST00000422386.5_1_7:75045260-75045695:+|nuORF nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2591552734375 2 566.744979 1131.4754 0.056509 3.2026E-05 -0.6595 -0.00037377 -0.603 -0.00034174 566.7438393711988 69.609 0.36578 69.13 68.997 69.363 -0.47903 20 15 2 0 0 0 0.23634 1 38172 38172 6.7232 0 1 928460 9068 16644 6272 6398 10398 10398 -0.0850741535848556 ENEEYWDF 8 Unmodified _ENEEYWDF_ 0 0 0 ENST00000485596.5_1_15:85634092-85681131:+|nuORF;nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A;ENST00000561374.1_1_15:85658495-85659351:+|nuORF ENST00000485596.5_1_15:85634092-85681131:+|nuORF ENST00000485596.5_1_15:85634092-85681131:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2154541015625 2 566.216911 1130.41927 NaN NaN NaN NaN NaN NaN NaN 59.431 1 59.431 58.931 59.931 0 0 0 0 0.97444 1 33113 33113 2.5775 0.51773 1 9069 1105 6273 6399 10399 10399 -0.14072300203656596 ENEGRSEGF 9 Unmodified _ENEGRSEGF_ 0 0 0 REV__ENSG00000196569|ENST00000421865|LAMA2 REV__ENSG00000196569|ENST00000421865|LAMA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2470703125 2 512.720153 1023.42575 0.91733 0.00047033 -1.3236 -0.00067863 -0.40626 -0.0002083 512.719299978099 50.872 0.27694 45.223 45.103 45.38 -5.649 22 16 2 0 0 0 0.19891 1 31904 31904 7.2892 4.0079 1 18690000 + 9070 23847 6274 6400 10400 10400 -0.08502362252261264 ENEHHIRFF 9 Unmodified _ENEHHIRFF_ 0 0 0 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 ENSG00000206026|ENST00000579022|SMIM21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7962646484375 2 614.796529 1227.5785 0.27976 0.000172 -2.2573 -0.0013878 -1.9776 -0.0012158 614.7946700853623 62.112 0.21499 62.112 61.974 62.189 0 16 8 3 0 0 0 0.36964 1 34641 34641 13.906 1.6654 1 3050800 9071 10389 6275 6401 10401 10401 -0.026181220650187242 ENELFLGMY 9 Unmodified _ENELFLGMY_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5076599121094 3 372.507442 1114.5005 0.76127 0.00028358 -0.2906 -0.00010825 0.47068 0.00017533 372.5073277170871 41.459 0.45641 36.851 36.639 37.095 -4.6079 62 29 3 0 0 0 0.58466 1 24871 24871 1.1933 0.12188 1 28990000 9072 463 6276 6402 10402 10402 -0.05217315765253261 ENENHQVF 8 Unmodified _ENENHQVF_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MSMS AL20221201_MKP_PDAC_01 4 508.3042602539062 2 508.725238 1015.43592 NaN NaN NaN NaN NaN NaN NaN 59.392 1 53.278 52.778 53.778 -6.1147 0 0 0 0.95607 1 38132 38132 9.3474 0 1 9073 4494 6277 6403 10403 10403 -0.07117754527030229 ENEPYPAEY 9 Unmodified _ENEPYPAEY_ 0 0 0 ENSG00000135956|ENST00000258439|TMEM127 ENSG00000135956|ENST00000258439|TMEM127 ENSG00000135956|ENST00000258439|TMEM127 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.23388671875 2 556.232561 1110.45057 1.0063 0.00055972 0.56332 0.00031334 1.5696 0.00087306 556.2329661330781 51.338 0.67911 51.338 50.843 51.522 0 89 32 5 0 0 0 0.36964 1 28348 28348 13.906 0.39817 1 41147000 9074 4766 6278 6404 10404 10404 -0.10023727169550511 ENERKYVF 8 Unmodified _ENERKYVF_ 0 0 0 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.79345703125 2 542.774731 1083.53491 0.72917 0.00039577 -2.3204 -0.0012595 -1.5912 -0.00086368 542.7731209139512 36.599 0.37006 36.599 36.487 36.857 0 26 17 3 0 0 0 8.7369 1 19533 19533 26.884 12.302 1 6251500 + 9075 29477 6279 6405 10405 10405 -0.0035173156215932977 ENFEEVPLN 9 Unmodified _ENFEEVPLN_ 0 0 0 REV__nc|ENSG00000082641|Q14494-2|NFE2L1 REV__nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2776489257812 2 545.756204 1089.49785 -0.0044428 -2.4247E-06 -2.85 -0.0015554 -2.8544 -0.0015578 545.7551227848933 70.541 0.14021 70.541 70.474 70.614 0 8 5 2 0 0 0 0.15117 1 39298 39298 29.082 10.947 1 182950 + 9076 17709 6280 6406 10406 10406 -0.04331447898562146 ENFENMCLI 9 Unmodified _ENFENMCLI_ 0 0 0 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 ENSG00000198108|ENST00000305031|CHSY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.78466796875 2 556.741185 1111.46782 0.36838 0.00020509 -1.0509 -0.00058507 -0.6825 -0.00037998 556.7404321961093 54.846 0.2383 54.379 54.321 54.559 -0.46664 17 11 2 0 0 0 0.21052 1 29734 29734 6.7232 1.9672 1 763770 9077 10051 6281 6407 10407 10407 -0.08345846159750181 ENFREIYHLM 10 Unmodified _ENFREIYHLM_ 0 0 0 REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1 REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.3291625976562 2 676.326805 1350.63906 NaN NaN NaN NaN NaN NaN NaN 96.096 1 95.792 95.292 96.292 -0.30472 0 0 0 1.0019 1 52483 52483 0.45834 0.057624 1 + 9078 21715 6282 6408 10408 10408 -0.022237727969468324 ENFRRLFL 8 Unmodified _ENFRRLFL_ 0 0 0 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7373657226562 2 547.808908 1093.60326 0.77115 0.00042245 -1.3673 -0.00074901 -0.59612 -0.00032656 547.8081942440022 39.094 0.30724 34.643 34.459 34.766 -4.4509 35 19 2 0 0 0 8.7369 1 23246 23246 8.5933 0 1 12861000 + 9079 17889 6283 6409 10409 10409 0.06020557808369631 ENFRRMFR 8 Unmodified _ENFRRMFR_ 0 0 0 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7611694335938 2 578.295642 1154.57673 0.60346 0.00034898 2.5365 0.0014668 3.1399 0.0018158 578.2976707232973 48.629 0.19825 48.585 48.455 48.654 -0.04369 13 9 2 0 0 0 8.7369 1 26272 26272 10.824 0 1 832060 + 9080 17647 6284 6410 10410 10410 0.005625456453799416 ENFRSQGVTM 10 Unmodified _ENFRSQGVTM_ 0 0 0 DNAH17|p.L3352M|1|0.19|ENSG00000187775|chr17:78455760-78455760|G/T|missense_variant DNAH17|p.L3352M|1|0.19|ENSG00000187775|chr17:78455760-78455760|G/T|missense_variant DNAH17|p.L3352M|1|0.19|ENSG00000187775|chr17:78455760-78455760|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2822875976562 2 584.774405 1167.53426 0.70809 0.00041407 1.2775 0.00074705 1.9856 0.0011611 584.7748154757738 54.575 0.49631 48.709 48.516 49.012 -5.8653 61 30 3 0 0 0 0.56348 1 34842 34842 13.042 2.9685 1 53440000 9081 236 6285 6411 10411 10411 -0.04280894273506419 ENFYLEPYL 9 Unmodified _ENFYLEPYL_ 0 0 0 ENSG00000156467|ENST00000287022|UQCRB;ENST00000518876.1_1_8:97243285-97244208:-|nuORF;ENST00000521036.5_1_8:97243285-97243480:-|nuORF ENSG00000156467|ENST00000287022|UQCRB ENSG00000156467|ENST00000287022|UQCRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2864990234375 2 594.284597 1186.55464 -0.53843 -0.00031998 -1.4028 -0.00083366 -1.9412 -0.0011536 594.2837579256042 33.247 0.25766 33.247 33.088 33.345 0 47 12 5 0 0 0 0.25681 1 17475 17475 19.257 2.1441 1 32010000 9082 6455 6286 6412 10412 10412 -0.03117400342057408 ENGFNIFV 8 Unmodified _ENGFNIFV_ 0 0 0 nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 939.4570922851562 1 939.457059 938.449782 0.046128 4.3336E-05 0.20861 0.00019598 0.25474 0.00023931 939.4566466905192 77.585 0.26013 77.585 77.511 77.771 0 26 17 2 0 0 0 0.67686 1 43209 43209 19.257 0 1 2315100 9083 8423 6287 6413 10413 10413 -0.02190477027943416 ENGNRSWFYF 10 Unmodified _ENGNRSWFYF_ 0 0 0 nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF nc|ENSG00000084693|Q8NDL9-3|AGBL5 nc|ENSG00000084693|Q8NDL9-3|AGBL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.2942504882812 2 660.293819 1318.57309 0.027572 1.8205E-05 -0.28853 -0.00019052 -0.26096 -0.00017231 660.2937462756248 37.864 0.21472 37.593 37.485 37.699 -0.27133 23 10 3 0 0 0 0.38092 1 19909 19909 22.736 3.4793 1 5128500 9084 1394 6288 6414 10414 10414 -0.073458456474782 ENGNRSWFYF 10 Unmodified _ENGNRSWFYF_ 0 0 0 nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27275826-27278122:+|nuORF;ENST00000489683.5_1_2:27275826-27279072:+|nuORF nc|ENSG00000084693|Q8NDL9-3|AGBL5 nc|ENSG00000084693|Q8NDL9-3|AGBL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.2938842773438 2 660.293819 1318.57309 0.68905 0.00045497 -0.3953 -0.00026101 0.29375 0.00019396 660.2936932372374 41.989 0.39941 37.305 37.109 37.508 -4.6846 55 24 3 0 0 0 0.11755 2 25237 25237;25376 43.858 18.459 1 21619000 9085 1394 6288 6414 10415;10416 10415 -0.073458456474782 ENGPDPELGNG 11 Unmodified _ENGPDPELGNG_ 0 0 0 ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF ENSG00000133401|ENST00000438447|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7408447265625 2 549.738542 1097.46253 NaN NaN NaN NaN NaN NaN NaN 69.237 1 69.237 68.737 69.737 0 0 0 0 0.93893 1 38578 38578 3.2813 0.39209 1 9086 4513 6289 6415 10417 10417 -0.08230110426393367 ENGRNPGS 8 Unmodified _ENGRNPGS_ 0 0 0 MAGI2|p.S875N|1|0.2|ENSG00000187391|chr7:78160246-78160246|C/T|missense_variant MAGI2|p.S875N|1|0.2|ENSG00000187391|chr7:78160246-78160246|C/T|missense_variant MAGI2|p.S875N|1|0.2|ENSG00000187391|chr7:78160246-78160246|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 415.6934814453125 2 415.691198 829.367843 NaN NaN NaN NaN NaN NaN NaN 25.003 1 22.12 21.62 22.62 -2.8831 0 0 0 0.81255 1 13650 13650 22.736 6.5872 1 9087 15983 6290 6416 10418 10418 -0.053665793870322887 ENHTAYSDYSD 11 Unmodified _ENHTAYSDYSD_ 0 0 0 REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF REV__ENST00000591055.5_1_19:1271297-1272439:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.5010070800781 3 434.502073 1300.48439 NaN NaN NaN NaN NaN NaN NaN 35.093 1 30.997 30.497 31.497 -4.0951 0 0 0 0.94184 1 20307 20307 0.40827 0 1 + 9088 29156 6291 6417 10419 10419 -0.15383350468459867 ENHVVVSY 8 Unmodified _ENHVVVSY_ 0 0 0 ENSG00000113594|ENST00000453190|LIFR ENSG00000113594|ENST00000453190|LIFR ENSG00000113594|ENST00000453190|LIFR MSMS AL20221201_MKP_PDAC_01 4 473.7349243164062 2 473.735074 945.455596 NaN NaN NaN NaN NaN NaN NaN 24.844 1 21.961 21.461 22.461 -2.8831 0 0 0 0.29029 1 13553 13553 64.236 3.8468 1 9089 2979 6292 6418 10420 10420 -0.019313785162808017 ENINMLPGLY 10 Unmodified _ENINMLPGLY_ 0 0 0 ENST00000270861.9_1_4:128812821-128813567:+|nuORF ENST00000270861.9_1_4:128812821-128813567:+|nuORF ENST00000270861.9_1_4:128812821-128813567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2910766601562 2 582.291899 1162.56925 -0.82368 -0.00047962 0.45179 0.00026308 -0.37189 -0.00021655 582.2921361426766 32.839 0.41021 32.839 32.639 33.049 0 47 20 3 0 0 0 0.44373 1 17243 17243 19.257 2.3147 1 9513900 9090 11365 6293 6419 10421 10421 -0.005536514655432256 ENIQPGQEY 9 Unmodified _ENIQPGQEY_ 0 0 0 nc|ENSG00000038295|O43897-2|TLL1;ENST00000518913.5_1_8:22034120-22058713:+|nuORF;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;nc|ENSG00000168487|P13497-6|BMP1;ENST00000520982.5_1_8:22034120-22069238:+|nuORF;ENSG00000168487|ENST00000306385|BMP1;TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant;ENSG00000038295|ENST00000061240|TLL1;ENSG00000095587|ENST00000357947|TLL2 nc|ENSG00000038295|O43897-2|TLL1 nc|ENSG00000038295|O43897-2|TLL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7447509765625 2 539.246003 1076.47745 -0.30423 -0.00016406 -0.67998 -0.00036668 -0.98421 -0.00053073 539.2457946454604 30.761 0.26544 30.761 30.587 30.852 0 22 12 2 0 0 0 0.20139 1 16043 16043 10.824 2.9138 1 20932000 9091 634 6294 6420 10422 10422 -0.057726185583760525 ENIRQAASSL 10 Unmodified _ENIRQAASSL_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7890014648438 2 544.78837 1087.56219 0.83058 0.00045249 0.12428 6.7708E-05 0.95486 0.0005202 544.7885328347311 35.072 0.3678 30.977 30.752 31.12 -4.0951 38 21 2 0 0 0 0.13297 1 20225 20225 41.956 2.0059 1 27776000 9092 2938 6295 6421 10423 10423 0.021907519782416784 ENITANGI 8 Unmodified _ENITANGI_ 0 0 0 ENSG00000152591|ENST00000651931|DSPP ENSG00000152591|ENST00000651931|DSPP ENSG00000152591|ENST00000651931|DSPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.2138061523438 2 416.213975 830.413397 -0.71665 -0.00029828 0.2607 0.00010851 -0.45594 -0.00018977 416.21396582933687 34.324 0.20947 34.324 34.156 34.365 0 15 10 2 0 0 0 0.61462 1 18068 18068 24.674 0 1 1749500 9093 6201 6296 6422 10424 10424 -0.008593539246589899 ENIYGLMEGK 10 Unmodified _ENIYGLMEGK_ 0 0 0 ENSG00000179636|ENST00000321760|TPPP2 ENSG00000179636|ENST00000321760|TPPP2 ENSG00000179636|ENST00000321760|TPPP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.7454223632812 2 577.281531 1152.54851 1.2327 0.0007116 -3.4559 -0.0019951 -2.2233 -0.0012834 577.280009228575 35.736 0.50159 31.544 31.301 31.802 -4.1928 50 31 2 0 0 0 0.22636 1 20623 20623 17.113 0 1 15737000 9094 8851 6297 6423 10425 10425 -0.021662418452251586 ENIYSHPAPP 10 Unmodified _ENIYSHPAPP_ 0 0 0 REV__nc|ENSG00000099250|O14786-3|NRP1 REV__nc|ENSG00000099250|O14786-3|NRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5181579589844 3 375.517218 1123.52982 1.4056 0.00052784 1.0952 0.00041125 2.5008 0.00093909 375.51778583965535 77.774 0.33244 71.598 71.498 71.83 -6.1757 25 18 2 0 0 0 0.48505 1 50885 50885 10.899 0.74838 1 9957600 + 9095 17969 6298 6424 10426 10426 -0.027000354247547875 ENKERPSSL 9 Unmodified _ENKERPSSL_ 0 0 0 REV__ENSG00000177181|ENST00000431473|RIMKLA REV__ENSG00000177181|ENST00000431473|RIMKLA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2406616210938 2 530.275095 1058.53564 0.14732 7.8121E-05 0.73398 0.00038921 0.8813 0.00046733 530.2756503491444 31.051 0.22065 31.051 30.953 31.174 0 17 10 2 0 0 0 0.15117 1 16126 16126 29.082 29.082 1 1609100 + 9096 22968 6299 6425 10427 10427 0.008710630869245506 ENKICDVNH 9 Unmodified _ENKICDVNH_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.3064575195312 2 536.248023 1070.48149 0.51231 0.00027472 -1.0716 -0.00057465 -0.5593 -0.00029992 536.2476014488668 43.893 0.35949 39.128 38.888 39.248 -4.7648 32 22 2 0 0 0 0.16418 1 26634 26634 25.399 11.493 1 9666000 9097 9138 6300 6426 10428 10428 -0.050928523363154454 ENKNSGPYLF 10 Unmodified _ENKNSGPYLF_ 0 0 0 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1;ENST00000497873.1_1_21:34107263-34123563:-|nuORF nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7860107421875 2 584.785296 1167.55604 0.90179 0.00052735 -0.27168 -0.00015888 0.6301 0.00036848 584.785049728783 65.066 0.40446 65.066 64.836 65.241 1.5259E-05 79 19 6 0 0 0 0.54684 1 35677 35677 13.906 0 1 78612000 9098 6625 6301 6427 10429 10429 -0.021037662532989998 ENKVTPLHFL 10 Unmodified _ENKVTPLHFL_ 0 0 0 ENSG00000170209|ENST00000303941|ANKK1 ENSG00000170209|ENST00000303941|ANKK1 ENSG00000170209|ENST00000303941|ANKK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3383178710938 2 599.334956 1196.65536 2.1239 0.0012729 0.93115 0.00055807 3.0551 0.001831 599.3354076481708 96.096 0.81897 96.1 95.865 96.684 0.004158 98 28 6 0 0 0 0.33553 1 53308 53308 25.399 2.663 1 549860000 9099 7958 6302 6428 10430 10430 0.06489676431465341 ENLANLVY 8 Unmodified _ENLANLVY_ 0 0 0 REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2414855957031 2 468.245275 934.475997 0.59552 0.00027885 -3.6797 -0.001723 -3.0841 -0.0014441 468.24353924731605 49.171 0.31237 49.171 49.004 49.316 0 24 14 2 0 0 0 0.37649 1 27013 27013 46.921 4.8263 1 5874100 + 9100 27028 6303 6429 10431 10431 0.006137921435083626 ENLANLVY 8 Unmodified _ENLANLVY_ 0 0 0 REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF REV__ENST00000436137.2_1_11:124530361-124543691:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 468.245275 934.475997 0.59552 0.00027885 -3.6797 -0.001723 -3.0841 -0.0014441 468.24353924731605 49.171 0.31237 49.171 49.004 49.316 0 0 0 NaN 46.921 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 5874100 + 9101 27028 6303 6429 0.006137921435083626 ENLDIPYIY 9 Unmodified _ENLDIPYIY_ 0 0 0 REV__ENSG00000198382|ENST00000356136|UVRAG REV__ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2847900390625 2 570.284597 1138.55464 0.499 0.00028457 -0.035838 -2.0438E-05 0.46316 0.00026413 570.2844757268927 72.656 0.49189 72.656 72.433 72.925 0 72 22 4 0 0 0 0.1773 2 40488 40379;40488 25.399 6.1423 1 14841000 + 9102 24015 6304 6430 10432;10433 10433 -0.009094003420614172 ENLDIPYIY 9 Unmodified _ENLDIPYIY_ 0 0 0 REV__ENSG00000198382|ENST00000356136|UVRAG REV__ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2847290039062 2 570.284597 1138.55464 0.84068 0.00047943 0.25488 0.00014536 1.0956 0.00062478 570.2844953552403 73.116 0.79024 72.64 72.251 73.042 -0.47588 87 35 4 0 0 0 0.1773 1 40061 40061 25.399 4.9457 1 4526200 + 9103 24015 6304 6430 10434 10434 -0.009094003420614172 ENLDIPYIY 9 Unmodified _ENLDIPYIY_ 0 0 0 REV__ENSG00000198382|ENST00000356136|UVRAG REV__ENSG00000198382|ENST00000356136|UVRAG MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2838745117188 2 570.284597 1138.55464 0.84054 0.00047935 -0.14294 -8.1514E-05 0.6976 0.00039783 570.2846325330627 80.785 0.7 74.61 74.296 74.996 -6.1757 81 38 3 0 0 0 0.08691 1 52952 52952 36.127 7.0454 1 69023000 + 9104 24015 6304 6430 10435 10435 -0.009094003420614172 ENLEVFRQKEI 11 Unmodified _ENLEVFRQKEI_ 0 0 0 TRIM42|p.S404F|1|0.28|ENSG00000155890|chr3:140687893-140687893|C/T|missense_variant TRIM42|p.S404F|1|0.28|ENSG00000155890|chr3:140687893-140687893|C/T|missense_variant TRIM42|p.S404F|1|0.28|ENSG00000155890|chr3:140687893-140687893|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 702.8796997070312 2 702.877716 1403.74088 NaN NaN NaN NaN NaN NaN NaN 68.58 1 62.404 61.904 62.904 -6.1757 0 0 0 0.79635 1 44769 44769 12.241 1.4411 1 9105 30199 6305 6431 10436 10436 0.05515796826443875 ENLGEYFIF 9 Unmodified _ENLGEYFIF_ 0 0 0 nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2720336914062 2 566.27149 1130.52843 NaN NaN NaN NaN NaN NaN NaN 72.636 1 72.16 71.66 72.66 -0.47605 0 0 0 0.6032 1 39751 39751 12.532 0 1 9106 5834 6306 6432 10437 10437 -0.0316166951354262 ENLNPNTIY 9 Unmodified _ENLNPNTIY_ 0 0 0 ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7447509765625 2 539.264196 1076.51384 -0.21429 -0.00011556 3.0984 0.0016708 2.8841 0.0015553 539.2651480388346 30.859 0.18196 30.859 30.75 30.932 0 18 8 3 0 0 0 0.18811 1 16043 16043 17.113 1.2657 1 6465400 9107 2828 6307 6433 10438 10438 -0.021357416616410774 ENLNYISF 8 Unmodified _ENLNYISF_ 0 0 0 REV__nc|ENSG00000173166|Q70E73-5|RAPH1 REV__nc|ENSG00000173166|Q70E73-5|RAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.4773559570312 1 999.478188 998.470912 -0.11869 -0.00011863 0.16297 0.00016289 0.04428 4.4257E-05 999.4784120852704 51.742 0.22068 51.742 51.622 51.842 0 13 9 2 0 0 0 0.60622 1 28584 28584 25.399 2.663 1 1315100 + 9108 22708 6308 6434 10439 10439 -0.028385117190964593 ENLSPQSSQI 10 Unmodified _ENLSPQSSQI_ 0 0 0 REV__ENSG00000149124|ENST00000344743|GLYAT REV__ENSG00000149124|ENST00000344743|GLYAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2722778320312 2 551.772385 1101.53022 0.5356 0.00029553 -0.61521 -0.00033946 -0.079611 -4.3927E-05 552.2725666413232 66.563 0.74164 60.388 60.027 60.769 -6.1757 111 41 4 0 0 0 0.48505 1 43343 43343 17.113 0.1706 1 82512000 + 9109 20980 6309 6435 10440 10440 -0.016486604955616713 ENMPSHFKF 9 Unmodified _ENMPSHFKF_ 0 0 0 ENST00000432610.1_1_10:22896825-22898637:-|nuORF;ENST00000422321.5_1_10:22856588-22898637:-|nuORF;nc|ENSG00000150867|P48426-2|PIP4K2A;ENSG00000150867|ENST00000376573|PIP4K2A ENST00000432610.1_1_10:22896825-22898637:-|nuORF ENST00000432610.1_1_10:22896825-22898637:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8770141601562 3 379.511298 1135.51206 -0.64844 -0.00024609 0.053968 2.0481E-05 -0.59447 -0.00022561 379.5112771319488 27.372 0.9999 27.372 26.53 27.53 0 135 48 3 0 0 0 0.21493 1 13649 13649 4.897 4.897 1 13859000 9110 6076 6310 6436 10441 10441 -0.05027073951282546 ENMPVITHF 9 Unmodified _ENMPVITHF_ 0 0 0 ENST00000251047.5_1_18:56996763-56996880:-|nuORF ENST00000251047.5_1_18:56996763-56996880:-|nuORF ENST00000251047.5_1_18:56996763-56996880:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.1745300292969 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 47.076 1 41.995 41.495 42.495 -5.0805 0 0 0 0.7243 1 29179 29179 5.2969 0 1 9111 11143 6311 6437 10442 10442 -0.022981898085163266 ENMYNLTFH 9 Unmodified _ENMYNLTFH_ 0 0 0 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1747131347656 3 390.174574 1167.50189 -0.28767 -0.00011224 0.089908 3.508E-05 -0.19776 -7.7163E-05 390.1746357920951 20.925 0.84016 20.954 20.582 21.422 0.028357 57 40 2 0 0 0 0.58865 1 10791 10791 1.0715 0.56551 1 1447700 9112 7932 6312 6438 10443 10443 -0.07515681676522945 ENNFRQILFLI 11 Unmodified _ENNFRQILFLI_ 0 0 0 nc|ENSG00000164744|Q8TAQ9-2|SUN3;nc|ENSG00000164744|Q8TAQ9-3|SUN3;ENSG00000164744|ENST00000297325|SUN3 nc|ENSG00000164744|Q8TAQ9-2|SUN3 nc|ENSG00000164744|Q8TAQ9-2|SUN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.597900390625 3 469.597871 1405.77178 0.54162 0.00025434 0.20754 9.746E-05 0.74916 0.0003518 469.59797230181584 45.524 0.32525 40.569 40.464 40.789 -4.9549 26 21 2 0 0 0 0.60536 1 27984 27984 11.065 1.301 1 10791000 9113 7238 6313 6439 10444 10444 0.0851299493137958 ENNLPKGYSF 10 Unmodified _ENNLPKGYSF_ 0 0 0 REV__ENSG00000180917|ENST00000434935|CMTR2 REV__ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2914428710938 2 584.785296 1167.55604 0.61017 0.00035682 -2.2504 -0.001316 -1.6403 -0.00095921 584.783073795064 35.294 0.51842 31.199 30.973 31.491 -4.0951 83 31 4 0 0 0 0.50362 1 20423 20423 16.149 2.6412 1 18799000 + 9114 23175 6314 6440 10445 10445 -0.021037662532762624 ENPGGCRR 8 Unmodified _ENPGGCRR_ 0 0 0 nc|ENSG00000139890|Q8IYK8-2|REM2 nc|ENSG00000139890|Q8IYK8-2|REM2 nc|ENSG00000139890|Q8IYK8-2|REM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.419189453125 1 888.41046 887.403183 0.030215 2.6844E-05 -0.17599 -0.00015635 -0.14577 -0.00012951 888.410191996376 37.876 0.36497 37.876 37.724 38.089 0 47 17 4 0 0 0 0.80992 1 20190 20190 0.69038 0 1 22672000 9115 16231 6315 6441 10446 10446 -0.04502240130887003 ENPIDLYIY 9 Unmodified _ENPIDLYIY_ 0 0 0 nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4 nc|ENSG00000179242|P55283-2|CDH4 nc|ENSG00000179242|P55283-2|CDH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.28515625 2 570.284597 1138.55464 0.84054 0.00047935 -0.14294 -8.1514E-05 0.6976 0.00039783 570.2846325330627 80.785 0.7 74.61 74.296 74.996 -6.1757 81 38 3 0 0 0 0.10734 1 53072 53072 32.305 3.8186 1 69023000 9116 8820 6316 6442 10447 10447 -0.009094003420614172 ENPMVQLFYGT 11 Unmodified _ENPMVQLFYGT_ 0 0 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MSMS AL20221201_MKP_PDAC_01 4 649.8090209960938 2 649.807913 1297.60127 NaN NaN NaN NaN NaN NaN NaN 38.366 1 33.997 33.497 34.497 -4.3689 0 0 0 0.71476 1 22624 22624 16.149 3.9084 1 9117 696 6317 6443 10448 10448 -0.03562283782434861 ENQFDPPIV 9 Unmodified _ENQFDPPIV_ 0 0 0 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7615966796875 2 529.761289 1057.50803 0.51602 0.00027337 0.31047 0.00016448 0.8265 0.00043785 529.7613733211388 58.144 0.32542 58.144 57.99 58.316 0 36 12 4 0 0 0 0.28047 1 32451 32451 18.135 18.135 1 8185400 9118 10136 6318 6444 10449 10449 -0.018428401733444844 ENQLAEELYL 10 Unmodified _ENQLAEELYL_ 0 0 0 REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2041015625 3 407.871438 1220.59248 -0.66607 -0.00027167 -3.7435 -0.0015269 -4.4096 -0.0017986 408.204272984134 14.82 0.021685 14.82 14.813 14.835 0 5 4 2 0 0 0 0.7191 1 7077 7077 0.77653 0.27058 1 580530 + 9119 17924 6319 6445 10450 10450 -0.008989341472215528 ENQLAEELYL 10 Unmodified _ENQLAEELYL_ 0 0 0 REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.871438 1220.59248 -0.66607 -0.00027167 -3.7435 -0.0015269 -4.4096 -0.0017986 408.204272984134 14.82 0.021685 14.82 14.813 14.835 0 0 0 NaN 0.77653 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 580530 + 9120 17924 6319 6445 -0.008989341472215528 ENQYIYAGDI 10 Unmodified _ENQYIYAGDI_ 0 0 0 REV__nc|ENSG00000122787|P51857-3|AKR1D1 REV__nc|ENSG00000122787|P51857-3|AKR1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2750244140625 2 593.274761 1184.53497 0.074941 4.4461E-05 0.44034 0.00026124 0.51528 0.00030571 593.2751201258382 80.326 0.31311 80.326 80.138 80.452 0 37 15 3 0 0 0 0.62068 1 44561 44561 10.074 1.3285 1 1971100 + 9121 19360 6320 6446 10451 10451 -0.049917763527901116 ENQYIYAGDI 10 Unmodified _ENQYIYAGDI_ 0 0 0 REV__nc|ENSG00000122787|P51857-3|AKR1D1 REV__nc|ENSG00000122787|P51857-3|AKR1D1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 593.274761 1184.53497 0.074941 4.4461E-05 0.44034 0.00026124 0.51528 0.00030571 593.2751201258382 80.326 0.31311 80.326 80.138 80.452 0 -0.035543 0.00012956 NaN 10.074 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1971100 + 9122 19360 6320 6446 -0.049917763527901116 ENRDNHID 8 Unmodified _ENRDNHID_ 0 0 0 ENSG00000170832|ENST00000300896|USP32;nc|ENSG00000170832|Q8NFA0-2|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2290649414062 2 506.725769 1011.43699 1.0383 0.00052614 -1.2077 -0.00061196 -0.16935 -8.5816E-05 506.72387022766964 36.062 0.79603 31.869 31.286 32.082 -4.1928 92 49 3 0 0 0 0.64853 1 20893 20893 21.747 2.3076 1 24412000 9123 8028 6321 6447 10452 10452 -0.06827540158155898 ENRILHWQR 9 Unmodified _ENRILHWQR_ 0 0 0 nc|ENSG00000088756|Q9P2N2-3|ARHGAP28;nc|ENSG00000088756|Q9P2N2-2|ARHGAP28 nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.337158203125 2 626.338895 1250.66324 NaN NaN NaN NaN NaN NaN NaN 84.812 1 84.812 84.312 85.312 0 0 0 0 0.85798 1 47011 47011 0.52476 0.066424 1 9124 16066 6322 6448 10453 10453 0.04793248471605693 ENRKCAGNHII 11 Unmodified _ENRKCAGNHII_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8852844238281 3 418.883906 1253.62989 0.93035 0.00038971 1.1983 0.00050196 2.1287 0.00089167 418.8847512597042 33.126 0.57533 29.27 28.904 29.48 -3.8562 91 35 4 0 0 0 0.63851 1 18892 18892 4.7159 0 1 68725000 9125 3181 6323 6449 10454 10454 0.013218786374181946 ENRQVSQDL 9 Unmodified _ENRQVSQDL_ 0 0 0 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.768798828125 2 544.770177 1087.5258 0.4489 0.00024455 -2.352 -0.0012813 -1.9031 -0.0010368 544.7690436835329 47.379 0.23831 47.379 47.212 47.45 0 21 10 3 0 0 0 0.11784 1 25938 25938 31.268 3.6395 1 2140000 9126 10526 6324 6450 10455 10455 -0.014461249184705594 ENSMKMWEY 9 Unmodified _ENSMKMWEY_ 0 0 0 ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK ENSG00000274588|ENST00000611977|DGKK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.2520141601562 2 609.251917 1216.48928 0.46899 0.00028573 -0.6592 -0.00040162 -0.19022 -0.00011589 609.2514537587991 63.04 0.26664 62.554 62.423 62.689 -0.48617 20 12 2 0 0 0 0.55144 1 34394 34394 4.3292 0.38484 1 2868300 9127 10901 6325 6451 10456 10456 -0.11030461131031188 ENSVFYLY 8 Unmodified _ENSVFYLY_ 0 0 0 ENST00000239231.6_1_5:167978076-167978319:-|nuORF ENST00000239231.6_1_5:167978076-167978319:-|nuORF ENST00000239231.6_1_5:167978076-167978319:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2789916992188 2 517.745108 1033.47566 -0.05009 -2.5934E-05 -0.020693 -1.0714E-05 -0.070783 -3.6647E-05 518.2458939457823 32.496 0.17753 32.526 32.466 32.643 0.029743 9 6 2 0 0 0 8.7369 1 17031 17031 12.532 1.7076 1 816560 9128 11100 6326 6452 10457 10457 -0.03973627576306171 ENTKNRSEL 9 Unmodified _ENTKNRSEL_ 0 0 0 REV__ENSG00000174799|ENST00000257287|CEP135 REV__ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.779052734375 2 545.778002 1089.54145 0.35625 0.00019443 2.5998 0.0014189 2.956 0.0016133 545.7793747407834 68.713 0.22977 68.713 68.634 68.864 0 18 9 2 0 0 0 0.40476 1 38308 38308 12.241 4.0851 1 600880 + 9129 22818 6327 6453 10458 10458 0.00026161598589169444 ENTPLVPSG 9 Unmodified _ENTPLVPSG_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 915.4681396484375 1 913.462538 912.455261 0.47683 0.00043557 -1.0726 -0.00097974 -0.59572 -0.00054417 913.4612874400497 35.062 0.50504 30.967 30.718 31.223 -4.0951 62 29 3 0 0 0 0.30562 1 20348 20348 16.942 5.302 1 31362000 9130 10288 6328 6454 10459 10459 -0.004467982361234135 ENTRFIPG 8 Unmodified _ENTRFIPG_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2452697753906 2 467.243067 932.47158 0.80162 0.00037455 -0.87351 -0.00040814 -0.071886 -3.3588E-05 467.2425614094293 45.879 0.41951 45.879 45.745 46.164 0 37 20 3 0 0 0 0.18875 1 25020 25020 74.423 23.568 1 17218000 + 9131 17408 6329 6455 10460 10460 0.0026432772062889853 ENTRFIPG 8 Unmodified _ENTRFIPG_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2432861328125 2 467.243067 932.47158 0.27792 0.00012986 0.28814 0.00013463 0.56607 0.00026449 467.243083552978 46.127 0.23396 45.791 45.705 45.939 -0.33664 17 11 2 0 0 0 0.27285 1 24701 24701 58.679 24.576 1 5155400 + 9132 17408 6329 6455 10461 10461 0.0026432772062889853 ENTRFIPG 8 Unmodified _ENTRFIPG_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 467.243067 932.47158 0.80162 0.00037455 -0.87351 -0.00040814 -0.071886 -3.3588E-05 467.2425614094293 45.879 0.41951 45.879 45.745 46.164 0 0.044113 -0.0005968 NaN 74.423 37 20 3 NaN NaN NaN NaN 0 NaN NaN 0 17218000 + 9133 17408 6329 6455 0.0026432772062889853 ENTRFIPG 8 Unmodified _ENTRFIPG_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 467.243067 932.47158 0.27792 0.00012986 0.28814 0.00013463 0.56607 0.00026449 467.243083552978 46.127 0.23396 45.791 45.705 45.939 -0.33664 -0.044113 0.00048875 NaN 74.423 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5155400 + 9134 17408 6329 6455 0.0026432772062889853 ENTVALRM 8 Unmodified _ENTVALRM_ 0 0 0 REV__nc|ENSG00000104059|O60320-2|ENTREP2 REV__nc|ENSG00000104059|O60320-2|ENTREP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4789428710938 1 933.482227 932.474951 0.68072 0.00063544 -3.2999 -0.0030804 -2.6192 -0.0024449 933.4786506216317 45.849 0.30112 45.849 45.787 46.088 0 22 14 2 0 0 0 0.25522 1 25025 25025 61.357 15.337 1 4447200 + 9135 18335 6330 6456 10462 10462 0.006012545029761895 ENTVALRM 8 Unmodified _ENTVALRM_ 0 0 0 REV__nc|ENSG00000104059|O60320-2|ENTREP2 REV__nc|ENSG00000104059|O60320-2|ENTREP2 MSMS AL20221201_MKP_PDAC_01 4 467.2433471679688 2 467.244752 932.474951 NaN NaN NaN NaN NaN NaN NaN 51.799 1 46.065 45.565 46.565 -5.7345 0 0 0 0.095191 1 32624 32624 96.285 18.135 1 + 9136 18335 6330 6456 10463 10463 0.006012545029761895 ENVLAIISL 9 Unmodified _ENVLAIISL_ 0 0 0 ENSG00000079134|ENST00000261600|THOC1;ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1 ENSG00000079134|ENST00000261600|THOC1 ENSG00000079134|ENST00000261600|THOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 971.5771484375 1 971.577174 970.569897 0.7333 0.00071245 -0.56762 -0.00055149 0.16568 0.00016097 971.5764395396535 79.447 0.36887 78.958 78.727 79.096 -0.48932 33 15 3 0 0 0 0.047788 1 43550 43550 45.7 9.5726 1 3540400 9137 1263 6331 6457 10464 10464 0.08343511245811897 ENVLAIISL 9 Unmodified _ENVLAIISL_ 0 0 0 ENSG00000079134|ENST00000261600|THOC1;ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1 ENSG00000079134|ENST00000261600|THOC1 ENSG00000079134|ENST00000261600|THOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2921752929688 2 486.292225 970.569897 0.59578 0.00028972 -0.034529 -1.6791E-05 0.56125 0.00027293 486.2921485942898 78.858 0.37544 78.913 78.754 79.13 0.054977 33 14 3 0 0 0 0.032796 1 43541 43541 53.833 5.4869 1 8465000 9138 1263 6331 6457 10465 10465 0.08343511245811897 ENVLAIISL 9 Unmodified _ENVLAIISL_ 0 0 0 ENSG00000079134|ENST00000261600|THOC1;ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1 ENSG00000079134|ENST00000261600|THOC1 ENSG00000079134|ENST00000261600|THOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.292236328125 2 486.292225 970.569897 1.0208 0.00049639 0.22435 0.0001091 1.2451 0.00060549 486.29218332755147 87.411 0.7771 81.235 80.858 81.636 -6.1757 129 42 4 0 0 0 0.013609 1 57441 57441 70.332 5.097 1 291050000 9139 1263 6331 6457 10466 10466 0.08343511245811897 ENVLAIISL 9 Unmodified _ENVLAIISL_ 0 0 0 ENSG00000079134|ENST00000261600|THOC1;ENST00000582313.5_1_18:245829-268019:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1 ENSG00000079134|ENST00000261600|THOC1 ENSG00000079134|ENST00000261600|THOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 971.58154296875 1 971.577174 970.569897 0.71327 0.00069299 0.67014 0.0006511 1.3834 0.0013441 971.5775006681489 87.418 0.51326 81.243 80.963 81.476 -6.1757 55 27 3 0 0 0 0.010301 2 57753 57496;57753 79.596 14.361 1 40326000 9140 1263 6331 6457 10467;10468 10468 0.08343511245811897 ENVWLWITF 9 Unmodified _ENVWLWITF_ 0 0 0 ENSG00000141349|ENST00000269097|G6PC3 ENSG00000141349|ENST00000269097|G6PC3 ENSG00000141349|ENST00000269097|G6PC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3106079101562 2 604.310949 1206.60735 -0.25913 -0.0001566 -1.1028 -0.00066644 -1.3619 -0.00082304 604.3104596533226 32.718 0.23479 32.589 32.481 32.716 -0.12915 14 9 2 0 0 0 0.5029 1 17072 17072 7.2892 2.3922 1 1223800 9141 5317 6332 6458 10469 10469 0.012306025114185104 ENWLQAVSD 9 Unmodified _ENWLQAVSD_ 0 0 0 REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2489013671875 2 531.248546 1060.48254 0.031206 1.6578E-05 -0.46674 -0.00024795 -0.43553 -0.00023138 531.2482999594229 29.543 0.30755 29.574 29.451 29.759 0.030104 34 14 3 0 0 0 0.46501 1 15507 15507 9.3831 3.1773 1 44070000 + 9142 28492 6333 6459 10470 10470 -0.04528314695744484 ENWLQAVSD 9 Unmodified _ENWLQAVSD_ 0 0 0 REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.749755859375 2 531.248546 1060.48254 0.77693 0.00041274 -0.2585 -0.00013733 0.51843 0.00027541 531.2484095852261 34.43 0.31041 30.335 30.128 30.438 -4.0951 30 17 2 0 0 0 0.2324 1 19838 19838 20.415 3.3016 1 12156000 + 9143 28492 6333 6459 10471 10471 -0.04528314695744484 ENWLQAVSD 9 Unmodified _ENWLQAVSD_ 0 0 0 REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF REV__ENST00000534225.1_1_11:112024082-112024223:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3089599609375 2 531.248546 1060.48254 0.77693 0.00041274 -0.2585 -0.00013733 0.51843 0.00027541 531.2484095852261 34.43 0.31041 30.335 30.128 30.438 -4.0951 30 17 2 0 0 0 0.19496 1 19903 19903 13.906 3.0821 1 12156000 + 9144 28492 6333 6459 10472 10472 -0.04528314695744484 ENYNEAKCVTF 11 Unmodified _ENYNEAKCVTF_ 0 0 0 nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.2932739257812 2 659.292627 1316.5707 -0.0042754 -2.8187E-06 -0.27724 -0.00018278 -0.28151 -0.0001856 659.2925402170475 38.018 0.42009 38.018 37.764 38.184 0 82 20 5 0 0 0 0.50515 1 20183 20183 16.149 0 1 22680000 9145 8352 6334 6460 10473 10473 -0.07492062167489166 ENYNEAKCVTF 11 Unmodified _ENYNEAKCVTF_ 0 0 0 nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.293701171875 2 659.292627 1316.5707 0.060044 3.9587E-05 -0.66787 -0.00044032 -0.60783 -0.00040074 659.2923905989508 39.438 0.47976 39.438 39.115 39.595 0 50 22 3 0 0 0 0.65108 1 21054 21054 8.7454 0 1 3297100 9146 8352 6334 6460 10474 10474 -0.07492062167489166 ENYNEAKCVTF 11 Unmodified _ENYNEAKCVTF_ 0 0 0 nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.2933349609375 2 659.292627 1316.5707 0.4069 0.00026827 -0.26394 -0.00017401 0.14297 9.4258E-05 659.2923152943032 43.509 0.57278 38.745 38.581 39.153 -4.7648 83 36 3 0 0 0 0.26767 2 26494 26494;26625 28.495 3.5035 1 19357000 9147 8352 6334 6460 10475;10476 10475 -0.07492062167489166 ENYNEAKCVTF 11 Unmodified _ENYNEAKCVTF_ 0 0 0 nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 659.292627 1316.5707 0.28842 0.00019015 -0.23294 -0.00015358 0.055478 3.6576E-05 659.7940346600692 38.901 0.31069 38.901 38.725 39.036 0 0.078338 3.1641E-05 NaN 28.495 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1051000 9148 8352 6334 6460 -0.07492062167489166 ENYNEAKCVTF 11 Unmodified _ENYNEAKCVTF_ 0 0 0 nc|ENSG00000173662|Q7RTX1-2|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 nc|ENSG00000173662|Q7RTX1-2|TAS1R1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 659.292627 1316.5707 0.044833 2.9558E-05 0.11258 7.4221E-05 0.15741 0.00010378 659.2926271997476 38.428 0.39568 38.141 37.866 38.262 -0.28687 0.061814 0.00023846 NaN 16.149 63 17 4 NaN NaN NaN NaN 0 NaN NaN 0 11007000 9149 8352 6334 6460 -0.07492062167489166 EPAAFQALY 9 Unmodified _EPAAFQALY_ 0 0 0 nc|ENSG00000215845|Q8NFU3-2|TSTD1;nc|ENSG00000215845|Q8NFU3-3|TSTD1;ENSG00000215845|ENST00000423014|TSTD1;nc|ENSG00000215845|Q8NFU3-4|TSTD1 nc|ENSG00000215845|Q8NFU3-2|TSTD1 nc|ENSG00000215845|Q8NFU3-2|TSTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.254150390625 2 505.2531 1008.49165 1.1276 0.00056974 3.079 0.0015557 4.2067 0.0021254 505.75727374914624 71.623 0.38454 65.448 65.189 65.573 -6.1757 25 19 2 0 0 0 0.028475 1 46746 46746 56.177 11.77 1 48809000 9150 10538 6335 6461 10477 10477 -0.012259213394372637 EPADYQQNNE 10 Unmodified _EPADYQQNNE_ 0 0 0 REV__nc|ENSG00000132694|O15085|ARHGEF11 REV__nc|ENSG00000132694|O15085|ARHGEF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.1668701171875 3 403.166913 1206.47891 -0.34952 -0.00014092 0.32086 0.00012936 -0.028667 -1.1558E-05 403.1671021865483 52.05 0.27005 52.05 51.953 52.223 0 16 11 2 0 0 0 0.69377 1 28793 28793 1.7423 0 1 3728500 + 9151 19875 6336 6462 10478 10478 -0.11607029260244417 EPAFIIQHF 9 Unmodified _EPAFIIQHF_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.25 2 551.290017 1100.56548 0.29605 0.00016321 -1.7538 -0.00096687 -1.4578 -0.00080366 551.2879831153017 68.869 0.17599 68.388 68.33 68.506 -0.48071 13 7 2 0 0 0 0.15672 1 37646 37646 26.884 18.29 1 1931800 9152 1694 6337 6463 10479 10479 0.019220468228922982 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7531433105469 2 485.753267 969.491981 0.86888 0.00042206 -0.65292 -0.00031716 0.21596 0.0001049 485.752797870627 46.317 0.61002 46.317 46.068 46.678 0 95 28 5 0 0 0 0.016184 2 25327 25219;25327 67.344 20.423 1 219890000 9153 1555 6338 6464 10480;10481 10481 0.006014983804220719 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.5001220703125 1 970.499258 969.491981 0.7906 0.00076727 -1.6485 -0.0015998 -0.85786 -0.00083255 970.4975694452565 46.278 0.16505 46.278 46.186 46.351 0 11 7 2 0 0 0 0.070838 1 25302 25302 39.957 19.504 1 1327000 9154 1555 6338 6464 10482 10482 0.006014983804220719 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7536315917969 2 485.753267 969.491981 0.70376 0.00034186 -0.61996 -0.00030115 0.083799 4.0706E-05 485.75296943070913 46.566 0.31228 46.229 46.073 46.385 -0.33664 36 15 3 0 0 0 0.0090851 2 24877 24877;24984 85.357 22.784 1 26419000 9155 1555 6338 6464 10483;10484 10483 0.006014983804220719 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7532043457031 2 485.753267 969.491981 0.94972 0.00046133 0.61511 0.00029879 1.5648 0.00076012 485.7529281576711 46.24 0.22815 46.207 46.101 46.329 -0.033417 13 10 2 0 0 0 0.038285 1 24893 24893 50.855 23.971 1 2427700 9156 1555 6338 6464 10485 10485 0.006014983804220719 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7510070800781 2 485.753267 969.491981 0.55677 0.00027046 -0.78601 -0.00038181 -0.22923 -0.00011135 485.7528230686767 52.107 0.48602 46.373 46.166 46.652 -5.7345 64 31 3 0 0 0 0.010877 2 33017 32892;33017 77.984 38.027 1 304670000 9157 1555 6338 6464 10486;10487 10487 0.006014983804220719 EPAHIVASF 9 Unmodified _EPAHIVASF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MSMS AL20221201_MKP_PDAC_01 4 485.7537231445312 2 485.753267 969.491981 NaN NaN NaN NaN NaN NaN NaN 51.953 1 46.218 45.718 46.718 -5.7345 0 0 0 0.050352 1 32749 32749 57.471 23.369 1 9158 1555 6338 6464 10488 10488 0.006014983804220719 EPAITFGLL 9 Unmodified _EPAITFGLL_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7741394042969 2 480.773668 959.532783 0.47927 0.00023042 0.30609 0.00014716 0.78535 0.00037758 480.7737420576348 97.072 0.22171 96.829 96.685 96.907 -0.24277 12 9 2 0 0 0 0.58865 1 53029 53029 2.0598 0 1 378310 + 9159 21247 6339 6465 10489 10489 0.051398397000639306 EPALPSTSY 9 Unmodified _EPALPSTSY_ 0 0 0 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;nc|ENSG00000185049|Q9H3P2-7|NELFA ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MSMS AL20221201_MKP_PDAC_01 4 482.7348937988281 2 482.73474 963.454927 NaN NaN NaN NaN NaN NaN NaN 50.904 1 45.255 44.755 45.755 -5.649 0 0 0 0.18753 1 31987 31987 32.305 12.866 1 9160 9325 6340 6466 10490 10490 -0.028262179559874312 EPAPKITF 8 Unmodified _EPAPKITF_ 0 0 0 REV__C3|p.V1365F|1|0.18|ENSG00000125730|chr19:6684587-6684587|C/A|missense_variant REV__C3|p.V1365F|1|0.18|ENSG00000125730|chr19:6684587-6684587|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7524108886719 2 451.752736 901.490919 NaN NaN NaN NaN NaN NaN NaN 72.587 1 72.111 71.611 72.611 -0.47609 0 0 0 0.97444 1 39724 39724 5.2307 2.6532 1 + 9161 16751 6341 6467 10491 10491 0.0362328401151899 EPAPNQVTF 9 Unmodified _EPAPNQVTF_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7486572265625 2 501.748182 1001.48181 1.0101 0.00050682 -0.13006 -6.5256E-05 0.88006 0.00044157 501.7480685392022 46.287 0.52077 46.287 46.044 46.565 0 63 24 3 0 0 0 0.07916 1 25340 25340 37.974 8.8924 1 7260900 9162 5601 6342 6468 10492 10492 -0.018871093448069587 EPAPNQVTF 9 Unmodified _EPAPNQVTF_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7517395019531 2 501.748182 1001.48181 0.76459 0.00038363 2.2746 0.0011413 3.0391 0.0015249 501.7494246951843 53.331 0.37664 47.527 47.334 47.711 -5.8042 31 23 2 0 0 0 0.23158 1 33698 33698 20.454 3.5113 1 15551000 9163 5601 6342 6468 10493 10493 -0.018871093448069587 EPAPVQSLRVY 11 Unmodified _EPAPVQSLRVY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.2891845703125 2 629.843145 1257.67174 0.61104 0.00038486 -0.87192 -0.00054918 -0.26088 -0.00016431 629.8430986170861 50.263 0.1411 49.871 49.811 49.952 -0.3923 8 6 2 0 0 0 0.6704 1 27108 27108 8.4443 4.1151 1 1250900 9164 9331 6343 6469 10494 10494 0.05320757597587544 EPARPDITY 9 Unmodified _EPARPDITY_ 0 0 0 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2 ENST00000473095.1_1_7:56170554-56174106:-|nuORF ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2665405273438 2 531.266739 1060.51892 -0.3099 -0.00016464 0.16458 8.7436E-05 -0.14532 -7.7202E-05 531.2667386829926 34.684 0.50144 34.684 34.496 34.998 0 66 25 5 0 0 0 0.040683 2 18229 18229;18339 49.554 18.918 1 62948000 9165 2404 6344 6470 10495;10496 10495 -0.008914377990549838 EPARPDITY 9 Unmodified _EPARPDITY_ 0 0 0 ENST00000473095.1_1_7:56170554-56174106:-|nuORF;ENSG00000106153|ENST00000395422|CHCHD2 ENST00000473095.1_1_7:56170554-56174106:-|nuORF ENST00000473095.1_1_7:56170554-56174106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2670288085938 2 531.266739 1060.51892 0.85481 0.00045413 1.138 0.00060456 1.9928 0.0010587 531.2666978549894 39.363 0.51919 34.912 34.675 35.194 -4.4509 87 31 4 0 0 0 0.094149 1 23419 23419 34.402 0.29928 1 105930000 9166 2404 6344 6470 10497 10497 -0.008914377990549838 EPARRRRL 8 Unmodified _EPARRRRL_ 0 0 0 ENSG00000176022|ENST00000379198|B3GALT6 ENSG00000176022|ENST00000379198|B3GALT6 ENSG00000176022|ENST00000379198|B3GALT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.88330078125 3 351.884458 1052.63154 1.637 0.00057603 -1.7917 -0.00063047 -0.15471 -5.4439E-05 351.8841949493801 21.904 0.55009 19.17 18.955 19.505 -2.7348 82 30 3 0 0 0 0.78849 2 11703 11703;11810 10.824 5.9269 1 7615100 9167 8558 6345 6471 10498;10499 10498 0.10733300508309185 EPASAVASF 9 Unmodified _EPASAVASF_ 0 0 0 ENST00000309862.10_1_17:37830244-37844267:-|nuORF;nc|ENSG00000161395|Q96FM1-3|PGAP3;ENSG00000161395|ENST00000300658|PGAP3 ENST00000309862.10_1_17:37830244-37844267:-|nuORF ENST00000309862.10_1_17:37830244-37844267:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.7171020507812 2 439.71635 877.418148 NaN NaN NaN NaN NaN NaN NaN 45 1 45 44.5 45.5 0 0 0 0 0.23581 1 24508 24508 28.487 5.3384 1 9168 6791 6346 6472 10500 10500 -0.0254646978190749 EPATLLADTPV 11 Unmodified _EPATLLADTPV_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2772216796875 2 563.803154 1125.59175 0.65661 0.0003702 0.20186 0.00011381 0.85847 0.00048401 563.8034609169343 74.487 0.59487 74.533 74.281 74.876 0.045959 48 26 2 0 0 0 0.28953 1 41247 41247 13.042 9.446 1 2118700 9169 8867 6347 6473 10501 10501 0.0339827120371865 EPATWKIPF 9 Unmodified _EPATWKIPF_ 0 0 0 REV__nc|ENSG00000182866|P06239-3|LCK;REV__nc|ENSG00000143322|P42684-10|ABL2;REV__nc|ENSG00000010810|P06241-3|FYN;REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF REV__nc|ENSG00000143322|P42684-10|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8005981445312 2 544.792392 1087.57023 0.0093318 5.0839E-06 0.069301 3.7755E-05 0.078633 4.2839E-05 544.7923529701842 66.708 0.62346 66.225 65.946 66.569 -0.48323 114 29 6 0 0 0 0.48152 1 36345 36345 8.5933 0.68312 1 87160000 + 9170 29676;23302;17050;23896 6348 6474 10502 10502 0.029949309656331025 EPAVESPFSPP 11 Unmodified _EPAVESPFSPP_ 0 0 0 REV__ENST00000522060.1_1_8:144090549-144099792:-|nuORF REV__ENST00000522060.1_1_8:144090549-144099792:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1890869140625 3 386.188878 1155.5448 -0.44283 -0.00017102 0.00021264 8.212E-08 -0.44262 -0.00017094 386.1888445865426 20.857 1.3489 20.857 20.241 21.59 0 577 187 4 0 0 0 0.71341 1 10203 10203 1.2148 0.14337 1 55780000 + 9171 28231 6349 6475 10503 10503 -0.02674588347417739 EPAYSDYA 8 Unmodified _EPAYSDYA_ 0 0 0 REV__ENSG00000112232|ENST00000281156|KHDRBS2 REV__ENSG00000112232|ENST00000281156|KHDRBS2 MSMS AL20221201_MKP_PDAC_01 4 458.1919555664062 2 458.190165 914.365778 NaN NaN NaN NaN NaN NaN NaN 50.779 1 45.13 44.63 45.63 -5.649 0 0 0 0.93587 1 31898 31898 13.508 3.3245 1 + 9172 18796 6350 6476 10504 10504 -0.09483052915516055 EPCAEPERSL 10 Unmodified _EPCAEPERSL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10;nc|ENSG00000100065|Q9BWT7-2|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF ENSG00000100065|ENST00000251973|CARD10;ENST00000488141.5_1_22:37887199-37892645:-|nuORF ENSG00000100065|ENST00000251973|CARD10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7616577148438 2 565.760963 1129.50737 NaN NaN NaN NaN NaN NaN NaN 99.659 1 99.623 99.123 100.12 -0.036301 0 0 0 0.94014 1 55349 55349 6.2058 0.44535 1 9173 1747;14216 6351 6477 10505 10505 -0.05220002884675523 EPCEDGGGGP 10 Unmodified _EPCEDGGGGP_ 0 0 0 ENSG00000229544|ENST00000451024|NKX1-2 ENSG00000229544|ENST00000451024|NKX1-2 ENSG00000229544|ENST00000451024|NKX1-2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.1700439453125 2 459.168907 916.323261 NaN NaN NaN NaN NaN NaN NaN 103.13 1 103.02 102.52 103.52 -0.10458 0 0 0 1.0024 1 56253 56253 0.40072 0.40072 1 9174 10606 6352 6478 10506 10506 -0.13824771315375983 EPCGLRGAL 9 Carbamidomethyl (C) _EPC(Carbamidomethyl (C))GLRGAL_ EPC(1)GLRGAL EPC(42)GLRGAL 0 1 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7511291503906 2 486.750201 971.48585 1.2247 0.00059613 -1.6048 -0.00078113 -0.38007 -0.000185 486.74975811931273 40.883 0.63883 36.275 35.81 36.449 -4.6079 115 39 4 0 0 0 0.06187 1 24447 24447 42.095 20.348 1 103540000 9175 7728 6353 6479 10507 10507 752 -0.0010334312273698743 EPCKNVHVL 9 Carbamidomethyl (C) _EPC(Carbamidomethyl (C))KNVHVL_ EPC(1)KNVHVL EPC(61)KNVHVL 0 1 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.28662109375 2 548.284408 1094.55426 0.36173 0.00019833 0.65605 0.0003597 1.0178 0.00055803 548.2850696053547 27.747 0.24836 24.71 24.519 24.768 -3.0365 22 12 2 0 0 0 0.022193 1 15348 15348 61.357 32.276 1 6803100 9176 3361 6354 6480 10508 10508 341 0.01076901457099666 EPCPPYPQQSF 11 Carbamidomethyl (C) _EPC(Carbamidomethyl (C))PPYPQQSF_ EPC(1)PPYPQQSF EPC(97)PPYPQQSF 0 1 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.2957153320312 2 675.29517 1348.57579 0.69611 0.00047008 -0.67385 -0.00045505 0.022254 1.5028E-05 675.2949868875197 56.511 0.31139 50.534 50.375 50.687 -5.9769 23 17 2 0 0 0 4.2801E-06 1 36078 36078 96.936 78.562 1 12648000 9177 8545 6355 6481 10509 10509 820 -0.08455758304853589 EPCRPLHQL 9 Carbamidomethyl (C) _EPC(Carbamidomethyl (C))RPLHQL_ EPC(1)RPLHQL EPC(100)RPLHQL 0 1 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.29541015625 2 575.295307 1148.57606 0.46876 0.00026968 -0.44862 -0.00025809 0.020149 1.1592E-05 575.294758175505 27.908 0.33157 24.76 24.547 24.878 -3.1482 32 17 2 0 0 0 0.008513 1 15463 15463 99.755 42.506 1 19812000 9178 4249 6356 6482 10510 10510 425 0.007717062056826762 EPDARGLS 8 Unmodified _EPDARGLS_ 0 0 0 REV__ENSG00000166340|ENST00000299427|TPP1 REV__ENSG00000166340|ENST00000299427|TPP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.1951904296875 2 422.711599 843.408646 0.80418 0.00033993 0.60292 0.00025486 1.4071 0.00059479 422.71148860211383 26.604 0.24266 23.652 23.56 23.803 -2.9511 19 12 2 0 0 0 8.7369 1 14628 14628 9.3474 0 1 2666800 + 9179 22105 6357 6483 10511 10511 -0.019322380674111628 EPDCAGLGPIE 11 Unmodified _EPDCAGLGPIE_ 0 0 0 REV__ENSG00000174306|ENST00000683867|ZHX3 REV__ENSG00000174306|ENST00000683867|ZHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7506103515625 2 550.750064 1099.48558 0.54024 0.00029754 -2.235 -0.0012309 -1.6947 -0.00093337 550.7505382895504 66.415 0.2901 66.415 66.304 66.594 0 18 12 2 0 0 0 0.58219 1 37044 37044 12.241 1.4167 1 964760 + 9180 22783 6358 6484 10512 10512 -0.060188076332678975 EPDEEEFQE 9 Unmodified _EPDEEEFQE_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.22216796875 2 576.222391 1150.43023 0.44663 0.00025736 -1.0234 -0.00058971 -0.57678 -0.00033236 576.2221077154189 39.799 0.32636 35.269 35.044 35.371 -4.5294 57 20 4 0 0 0 0.5029 1 23736 23736 7.2892 1.0834 1 30547000 9181 5187 6359 6485 10513 10513 -0.13896942620021946 EPDFVAKFY 9 Unmodified _EPDFVAKFY_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2737426757812 2 558.274032 1114.53351 0.43299 0.00024172 -0.5469 -0.00030532 -0.11391 -6.3593E-05 558.2734409547603 63.328 0.42033 63.328 63.146 63.567 0 47 21 3 0 0 0 0.41742 1 35279 35279 11.64 0.81637 1 6812600 9182 8869 6360 6486 10514 10514 -0.019173656509110515 EPDFVAKFY 9 Unmodified _EPDFVAKFY_ 0 0 0 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2732543945312 2 558.274032 1114.53351 0.68341 0.00038153 -0.52845 -0.00029502 0.15496 8.6511E-05 558.2733046276629 63.871 0.41922 63.385 63.193 63.613 -0.48512 56 22 3 0 0 0 0.25681 1 34786 34786 19.257 7.6167 1 12231000 9183 8869 6360 6486 10515 10515 -0.019173656509110515 EPDGWRLY 8 Unmodified _EPDGWRLY_ 0 0 0 REV__nc|ENSG00000168959|P41594-3|GRM5 REV__nc|ENSG00000168959|P41594-3|GRM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.247802734375 2 518.248349 1034.48214 -0.34977 -0.00018127 -0.01634 -8.4684E-06 -0.36611 -0.00018974 518.2483660863073 33.158 0.37672 33.158 32.988 33.365 0 62 18 5 0 0 0 0.64853 1 17478 17478 21.747 8.7042 1 83618000 + 9184 22364 6361 6487 10516 10516 -0.033716896249416095 EPDHGPLGAPE 11 Unmodified _EPDHGPLGAPE_ 0 0 0 nc|ENSG00000119866|Q9H165-8|BCL11A;nc|ENSG00000119866|Q9H165-3|BCL11A;nc|ENSG00000119866|Q9H165-2|BCL11A;nc|ENSG00000119866|Q9H165-6|BCL11A;ENSG00000119866|ENST00000642384|BCL11A nc|ENSG00000119866|Q9H165-8|BCL11A nc|ENSG00000119866|Q9H165-8|BCL11A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8575439453125 3 373.508611 1117.504 -0.77327 -0.00028882 -0.96736 -0.00036132 -1.7406 -0.00065014 373.50817810493004 28.166 0.14069 28.166 28.09 28.231 0 10 6 2 0 0 0 0.3021 1 14569 14569 6.6235 2.434 1 817890 9185 3474 6362 6488 10517 10517 -0.05004929667029501 EPDIGLVLVP 10 Unmodified _EPDIGLVLVP_ 0 0 0 ENST00000451352.3_1_17:76160326-76160446:+|nuORF ENST00000451352.3_1_17:76160326-76160446:+|nuORF ENST00000451352.3_1_17:76160326-76160446:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7780151367188 2 526.305332 1050.59611 0.91673 0.00048248 -1.9104 -0.0010055 -0.99369 -0.00052298 526.304384901815 22.051 0.27684 19.316 19.175 19.452 -2.7348 26 15 2 0 0 0 0.23693 1 11909 11909 6.2058 0.97511 1 3128600 9186 13518 6363 6489 10518 10518 0.07283780417265007 EPDKDHLKF 9 Unmodified _EPDKDHLKF_ 0 0 0 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2373657226562 2 564.787838 1127.56112 0.6844 0.00038654 0.99881 0.00056412 1.6832 0.00095066 564.7885446576797 42.425 0.24526 42.425 42.279 42.524 0 16 11 2 0 0 0 0.16418 1 23003 23003 19.257 0 1 2033000 + 9187 24672 6364 6490 10519 10519 0.0024453760931919533 EPDKVDAYYIF 11 Unmodified _EPDKVDAYYIF_ 0 0 0 REV__ENSG00000123570|ENST00000243298|RAB9B REV__ENSG00000123570|ENST00000243298|RAB9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.8870849609375 3 453.887088 1358.63943 0.26812 0.00012169 -1.0451 -0.00047438 -0.77703 -0.00035268 453.88652103965427 15.862 0.041822 13.305 13.291 13.333 -2.557 11 8 2 0 0 0 0.71938 1 8181 8181 2.4348 0.18206 1 1829900 + 9188 19394 6365 6491 10520 10520 -0.02554074596105238 EPDQQLCLQ 9 Unmodified _EPDQQLCLQ_ 0 0 0 REV__nc|ENSG00000082146|Q9C0K7-3|STRADB REV__nc|ENSG00000082146|Q9C0K7-3|STRADB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2869873046875 2 537.250231 1072.48591 -0.34716 -0.00018651 -0.56819 -0.00030526 -0.91535 -0.00049177 537.2492491882844 28.799 0.40151 28.799 28.641 29.043 0 42 19 3 0 0 0 0.19496 1 14813 14813 13.906 1.6654 1 3740000 + 9189 17702 6366 6492 10521 10521 -0.04743387913413244 EPDRCCHGFS 10 Unmodified _EPDRCCHGFS_ 0 0 0 REV__ENST00000435683.6_1_19:1042703-1043196:+|nuORF REV__ENST00000435683.6_1_19:1042703-1043196:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7942504882812 2 575.723858 1149.43316 -0.1117 -6.4306E-05 1.8615 0.0010717 1.7498 0.0010074 575.7243320933317 41.623 0.19246 41.623 41.538 41.731 0 23 9 3 0 0 0 0.23227 1 22520 22520 10.824 8.5212 1 7409300 + 9190 27021 6367 6493 10522 10522 -0.13557669247870763 EPDSQKYRMIY 11 Unmodified _EPDSQKYRMIY_ 0 0 0 REV__nc|ENSG00000007350|P51854-4|TKTL1 REV__nc|ENSG00000007350|P51854-4|TKTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.34326171875 2 715.342652 1428.67075 0.38644 0.00027644 -0.12507 -8.9466E-05 0.26137 0.00018697 715.3425540968732 56.345 0.51341 50.368 50.118 50.632 -5.9769 82 29 4 0 0 0 0.5229 1 35971 35971 15.248 4.449 1 79357000 + 9191 17010 6368 6494 10523 10523 -0.026438248336262404 EPDTRSHRPH 10 Unmodified _EPDTRSHRPH_ 0 0 0 ENST00000361906.7_1_22:38616834-38616918:-|nuORF ENST00000361906.7_1_22:38616834-38616918:-|nuORF ENST00000361906.7_1_22:38616834-38616918:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.24169921875 2 616.299967 1230.58538 0.37933 0.00023378 -0.76636 -0.00047231 -0.38703 -0.00023853 616.3008071218578 54.971 0.15743 54.971 54.92 55.077 0 8 6 2 0 0 0 0.23634 1 30558 30558 6.7232 0 1 717950 9192 12196 6369 6495 10524 10524 -0.020688091844249357 EPDVSPLF 8 Unmodified _EPDVSPLF_ 0 0 0 REV__ENSG00000187231|ENST00000428443|SESTD1 REV__ENSG00000187231|ENST00000428443|SESTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4434204101562 1 903.445825 902.438549 -0.026387 -2.384E-05 -0.68738 -0.00062101 -0.71377 -0.00064485 903.4449977660116 62.246 1.0942 62.246 61.728 62.823 0 75 57 2 0 0 0 0.55032 1 34873 34873 30.225 3.8835 1 3251200 + 9193 23628 6370 6496 10525 10525 -0.016572991220982658 EPDWFIFEL 9 Unmodified _EPDWFIFEL_ 0 0 0 REV__ENST00000436148.1_1_13:100235248-100235293:+|nuORF REV__ENST00000436148.1_1_13:100235248-100235293:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2871704101562 2 598.28714 1194.55973 0.0061858 3.7009E-06 -2.258 -0.0013509 -2.2518 -0.0013472 598.2859275562101 85.821 0.25671 85.821 85.677 85.934 0 20 10 3 0 0 0 0.5029 1 47530 47530 7.2892 1.9923 1 972460 + 9194 27029 6371 6497 10526 10526 -0.02977096479435204 EPEAFVTIK 9 Unmodified _EPEAFVTIK_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7489013671875 2 517.281857 1032.54916 0.30644 0.00015851 -1.1177 -0.00057818 -0.8113 -0.00041967 517.2817041372293 65.816 0.44862 65.816 65.528 65.976 0 47 21 3 0 0 0 0.18521 1 36786 36786 16.942 2.104 1 8863500 9195 3129 6372 6498 10527 10527 0.034189208661246084 EPECEQVQME 10 Unmodified _EPECEQVQME_ 0 0 0 REV__ENST00000354485.5_1_9:732324-732786:+|nuORF REV__ENST00000354485.5_1_9:732324-732786:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8306274414062 3 407.830256 1220.46894 1.2175 0.00049652 0.038775 1.5814E-05 1.2562 0.00051233 407.83019306894664 71.766 0.28318 65.59 65.462 65.745 -6.1757 30 15 3 0 0 0 0.64628 1 46899 46899 5.0475 0.93089 1 31295000 + 9196 18550 6373 6499 10528 10528 -0.13247676581522683 EPEDFPNLY 9 Unmodified _EPEDFPNLY_ 0 0 0 REV__ENSG00000115504|ENST00000431489|EHBP1 REV__ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.1702880859375 3 375.169595 1122.48696 0.48414 0.00018163 3.052 0.001145 3.5362 0.0013267 375.17029773713614 71.324 0.24417 70.846 70.705 70.949 -0.47736 13 10 2 0 0 0 0.58466 1 39025 39025 1.1933 0.12188 1 776990 + 9197 18987 6374 6500 10529 10529 -0.06938850272854324 EPEEAAALY 9 Unmodified _EPEEAAALY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7322998046875 2 496.732197 991.449842 0.88516 0.00043969 0.70302 0.00034921 1.5882 0.0007889 496.7323529943504 42.852 0.3055 42.852 42.7 43.006 0 33 15 3 0 0 0 0.038285 1 23216 23216 50.855 22.368 1 8093200 9198 7128 6375 6501 10530 10530 -0.0462252181863505 EPEEAAALY 9 Unmodified _EPEEAAALY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4564208984375 1 992.457118 991.449842 0.61519 0.00061055 0.3184 0.000316 0.93359 0.00092655 992.4564940515885 42.88 0.12988 42.88 42.798 42.928 0 10 6 2 0 0 0 0.0090851 1 23251 23251 85.357 51.254 1 1818100 9199 7128 6375 6501 10531 10531 -0.0462252181863505 EPEEAAALY 9 Unmodified _EPEEAAALY_ 0 0 0 ENSG00000164062|ENST00000296456|APEH;ENST00000463616.1_1_3:49711921-49713416:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.73193359375 2 496.732197 991.449842 0.98929 0.00049141 1.7621 0.00087528 2.7514 0.0013667 496.7328750094907 50.029 0.26624 44.49 44.299 44.565 -5.5391 25 16 2 0 0 0 0.026094 1 31368 31368 57.471 17.514 1 12607000 9200 7128 6375 6501 10532 10532 -0.0462252181863505 EPEELYQTF 9 Unmodified _EPEELYQTF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2642822265625 2 578.263862 1154.51317 0.38529 0.0002228 -1.911 -0.0011051 -1.5257 -0.00088226 578.2618641149073 59.088 0.29589 59.088 58.945 59.241 0 22 12 3 0 0 0 0.2001 1 32986 32986 23.148 6.2061 1 2297000 9201 7651 6376 6502 10533 10533 -0.05790581101382486 EPEEVLKY 8 Unmodified _EPEEVLKY_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7587585449219 2 503.758215 1005.50188 0.13019 6.5586E-05 1.3102 0.00066002 1.4404 0.00072561 503.75882084021083 41.781 0.34856 41.781 41.626 41.975 0 52 17 5 0 0 0 0.44629 1 22548 22548 39.957 3.8303 1 63903000 9202 1256 6377 6503 10534 10534 -0.0006535840486776578 EPEEVLKY 8 Unmodified _EPEEVLKY_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.758215 1005.50188 -0.61479 -0.0003097 1.818 0.00091581 1.2032 0.00060611 503.759089551434 42.046 0.28257 41.739 41.597 41.879 -0.30682 -0.020818 0.00025616 NaN 39.957 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 52401000 9203 1256 6377 6503 -0.0006535840486776578 EPEGRPRPL 9 Unmodified _EPEGRPRPL_ 0 0 0 ENST00000258149.9_1_12:69201984-69202068:+|nuORF ENST00000258149.9_1_12:69201984-69202068:+|nuORF ENST00000258149.9_1_12:69201984-69202068:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8612060546875 3 350.861207 1049.56179 -0.48073 -0.00016867 -0.12214 -4.2855E-05 -0.60287 -0.00021153 350.861500973366 18.769 0.17541 18.769 18.703 18.879 0 15 12 2 0 0 0 0.51218 1 9377 9377 7.1017 1.3699 1 238470 9204 11198 6378 6504 10535 10535 0.038993770490378665 EPEGRPRPL 9 Unmodified _EPEGRPRPL_ 0 0 0 ENST00000258149.9_1_12:69201984-69202068:+|nuORF ENST00000258149.9_1_12:69201984-69202068:+|nuORF ENST00000258149.9_1_12:69201984-69202068:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1842956542969 3 350.861207 1049.56179 1.8339 0.00064344 -2.2104 -0.00077553 -0.37648 -0.00013209 350.8599668087004 20.148 0.084259 17.492 17.42 17.505 -2.6564 6 5 2 0 0 0 0.20399 1 10677 10677 7.1017 4.3665 1 1522400 9205 11198 6378 6504 10536 10536 0.038993770490378665 EPEHEPNPD 9 Unmodified _EPEHEPNPD_ 0 0 0 REV__ENSG00000132793|ENST00000373257|LPIN3 REV__ENSG00000132793|ENST00000373257|LPIN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.26904296875 2 532.219985 1062.42542 0.26199 0.00013944 -1.4092 -0.00075 -1.1472 -0.00061056 532.2189174647087 64.733 0.97076 64.733 64.301 65.272 0 102 45 3 0 0 0 0.18118 1 36320 36320 19.257 6.7254 1 6574700 + 9206 19881 6379 6505 10537 10537 -0.10329781972131968 EPEHEPNPD 9 Unmodified _EPEHEPNPD_ 0 0 0 REV__ENSG00000132793|ENST00000373257|LPIN3 REV__ENSG00000132793|ENST00000373257|LPIN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.2697143554688 2 532.219985 1062.42542 1.0165 0.00054101 -1.1549 -0.00061465 -0.13837 -7.3645E-05 532.2191338275878 71.938 0.41353 65.762 65.589 66.002 -6.1757 69 22 4 0 0 0 0.20554 1 47026 47026 9.3831 9.3831 1 59355000 + 9207 19881 6379 6505 10538 10538 -0.10329781972131968 EPEHLILEY 9 Unmodified _EPEHLILEY_ 0 0 0 nc|ENSG00000180488|Q8NAN2-2|MIGA1;ENSG00000180488|ENST00000370791|MIGA1;nc|ENSG00000180488|Q8NAN2|MIGA1 nc|ENSG00000180488|Q8NAN2-2|MIGA1 nc|ENSG00000180488|Q8NAN2-2|MIGA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7887573242188 2 571.790047 1141.56554 0.37828 0.0002163 -0.45613 -0.00026081 -0.077847 -4.4512E-05 571.7901662773703 56.744 0.5176 56.744 56.383 56.9 0 30 22 2 0 0 0 0.087258 1 31575 31575 36.044 18.931 1 3107400 9208 8907 6380 6506 10539 10539 0.0004200203222808341 EPEICRFIKI 10 Unmodified _EPEICRFIKI_ 0 0 0 REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.2281799316406 3 416.565403 1246.67438 -1.1569 -0.00048193 1.0667 0.00044435 -0.090211 -3.7579E-05 416.56590376386623 32.252 0.29039 32.252 32.084 32.374 0 25 14 2 0 0 0 0.23946 1 16786 16786 3.5871 0.74377 1 10007000 + 9209 17876 6381 6507 10540 10540 0.0609088973087637 EPEICRFIKI 10 Unmodified _EPEICRFIKI_ 0 0 0 REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF REV__ENST00000511971.5_1_4:56749994-56766742:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 416.565403 1246.67438 -0.080555 -3.3556E-05 1.2162 0.00050662 1.1356 0.00047307 416.56596105278066 32.243 0.25888 32.114 31.986 32.245 -0.12915 -0.068991 0.0001323 NaN 3.5871 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1394200 + 9210 17876 6381 6507 0.0609088973087637 EPEKELYV 8 Unmodified _EPEKELYV_ 0 0 0 REV__nc|ENSG00000282100|Q58FF6|HSP90AB4P REV__nc|ENSG00000282100|Q58FF6|HSP90AB4P MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7595825195312 2 503.758215 1005.50188 0.73303 0.00036927 0.60239 0.00030346 1.3354 0.00067273 503.75874477442255 47.032 0.58628 41.951 41.71 42.296 -5.0805 121 57 3 0 0 0 0.42423 1 29252 29252 42.095 2.1372 1 138690000 + 9211 30007 6382 6508 10541 10541 -0.0006535840486776578 EPEKLIDF 8 Unmodified _EPEKLIDF_ 0 0 0 ENST00000508446.1_1_8:15531285-15601080:+|nuORF ENST00000508446.1_1_8:15531285-15601080:+|nuORF ENST00000508446.1_1_8:15531285-15601080:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2625732421875 2 495.760758 989.506963 0.55003 0.00027268 0.43696 0.00021663 0.98698 0.00048931 495.7608479664482 87.34 0.33727 86.836 86.655 86.992 -0.50423 34 13 4 0 0 0 0.80676 1 47848 47848 2.5775 0 1 1354600 9212 14559 6383 6509 10542 10542 0.011789454577751712 EPELEEEGSL 10 Unmodified _EPELEEEGSL_ 0 0 0 REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF REV__ENST00000301781.10_1_11:62457841-62462085:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.80859375 2 566.256234 1130.49791 0.59774 0.00033848 -2.4542 -0.0013897 -1.8565 -0.0010513 566.2552811695411 91.357 0.38277 90.863 90.528 90.911 -0.49457 27 16 2 0 0 0 0.23896 1 49880 49880 3.5965 1.2938 1 353270 + 9213 22275 6384 6510 10543 10543 -0.06211492689226361 EPELVFAVNL 10 Unmodified _EPELVFAVNL_ 0 0 0 ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.8089599609375 2 565.808239 1129.60193 0.30477 0.00017244 1.1084 0.00062713 1.4132 0.00079957 565.8087450264386 90.842 0.34584 90.842 90.648 90.994 0 30 14 3 0 0 0 0.65471 1 50204 50204 13.042 3.6593 1 984790 9214 10757 6385 6511 10544 10544 0.042308789289336346 EPELVFAVNL 10 Unmodified _EPELVFAVNL_ 0 0 0 ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8094482421875 2 565.808239 1129.60193 0.59709 0.00033784 0.78659 0.00044506 1.3837 0.0007829 565.8085690077861 91.321 0.34265 90.827 90.663 91.006 -0.49457 38 15 3 0 0 0 0.60478 1 49980 49980 17.113 7.7298 1 2236000 9215 10757 6385 6511 10545 10545 0.042308789289336346 EPEPEEVCSK 10 Unmodified _EPEPEEVCSK_ 0 0 0 REV__ENST00000482651.5_1_1:156713243-156717241:-|nuORF REV__ENST00000482651.5_1_1:156713243-156717241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8385314941406 3 382.837628 1145.49105 0.24759 9.4785E-05 1.1173 0.00042775 1.3649 0.00052254 382.8382491302821 38.338 0.48315 38.338 38.22 38.703 0 150 34 6 0 0 0 0.67033 1 20543 20543 3.3196 0.58445 1 62666000 + 9216 20623 6386 6512 10546 10546 -0.07587128841441881 EPEPHILLF 9 Unmodified _EPEPHILLF_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7979125976562 2 547.797675 1093.5808 0.29866 0.00016361 0.38694 0.00021196 0.6856 0.00037557 547.7978167944322 78.84 0.71968 78.84 78.509 79.229 0 129 33 5 0 0 0 0.078417 2 43896 43693;43896 38.151 15.003 1 44881000 9217 3737 6387 6513 10547;10548 10548 0.03774913620077314 EPEPHILLF 9 Unmodified _EPEPHILLF_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7982788085938 2 547.797675 1093.5808 0.57996 0.0003177 0.40535 0.00022205 0.9853 0.00053975 547.7978046261601 79.268 0.70557 78.782 78.461 79.167 -0.48596 125 30 6 0 0 0 0.045537 2 43398 43398;43501 46.921 12.818 1 25914000 9218 3737 6387 6513 10549;10550 10549 0.03774913620077314 EPEPHILLF 9 Unmodified _EPEPHILLF_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2;ENST00000449661.1_1_9:80834204-80834270:+|nuORF;ENST00000477676.6_1_1:154947554-154951250:+|nuORF;ENSG00000173207|ENST00000308987|CKS1B ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7974243164062 2 547.797675 1093.5808 1.0121 0.00055443 -1.1664 -0.00063897 -0.15432 -8.4539E-05 547.7970594799676 95.042 1.874 88.867 87.622 89.496 -6.1757 211 108 3 0 0 0 0.038285 3 63307 63061;63176;63307 50.855 9.0154 1 131530000 9219 3737 6387 6513 10551;10552;10553 10553 0.03774913620077314 EPEPIVEPP 9 Unmodified _EPEPIVEPP_ 0 0 0 REV__nc|ENSG00000138162|O95359-3|TACC2 REV__nc|ENSG00000138162|O95359-3|TACC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7596740722656 2 503.758215 1005.50188 0.73303 0.00036927 0.60239 0.00030346 1.3354 0.00067273 503.75874477442255 47.032 0.58628 41.951 41.71 42.296 -5.0805 121 57 3 0 0 0 0.087258 1 29115 29115 36.044 1.9418 1 138690000 + 9220 20310 6388 6514 10554 10554 -0.0006535840486776578 EPEQFVVVM 9 Oxidation (M) _EPEQFVVVM(Oxidation (M))_ EPEQFVVVM(1) EPEQFVVVM(59) 0 0 1 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2645263671875 2 547.26535 1092.51615 0.56582 0.00030965 -2.3504 -0.0012863 -1.7845 -0.00097662 547.2638896315675 53.554 0.32576 53.554 53.38 53.705 0 38 15 3 0 0 0 0.024882 2 29755 29649;29755 58.679 30.192 1 13898000 9221 5186 6389 6515 10555;10556 10556 953 -0.026410292482069053 EPEQQDQN 8 Unmodified _EPEQQDQN_ 0 0 0 REV__nc|ENSG00000081377|O60729-2|CDC14B REV__nc|ENSG00000081377|O60729-2|CDC14B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2038269042969 2 494.204335 986.394118 NaN NaN NaN NaN NaN NaN NaN 69.785 1 69.785 69.285 70.285 0 0 0 0 0.97444 1 38877 38877 2.3027 0 1 + 9222 17691 6390 6516 10557 10557 -0.09962355006234702 EPESLGVVY 9 Unmodified _EPESLGVVY_ 0 0 0 ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7510986328125 2 496.75039 991.486227 0.89613 0.00044515 -0.054303 -2.6975E-05 0.84182 0.00041818 496.75052946683405 54.344 0.60907 54.344 54.132 54.741 0 52 26 3 0 0 0 0.052168 2 30208 30063;30208 44.407 15.92 1 18467000 9223 3840 6391 6517 10558;10559 10559 -0.009856449219000751 EPESLGVVY 9 Unmodified _EPESLGVVY_ 0 0 0 ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4933471679688 1 992.493504 991.486227 0.64265 0.00063783 0.27163 0.0002696 0.91429 0.00090742 992.49339823305 54.354 0.41683 54.354 54.111 54.528 0 44 18 3 0 0 0 0.0083087 1 30180 30180 97.075 54.98 1 6132500 9224 3840 6391 6517 10560 10560 -0.009856449219000751 EPESLGVVY 9 Unmodified _EPESLGVVY_ 0 0 0 ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A ENSG00000125352|ENST00000371442|RNF113A MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7510986328125 2 496.75039 991.486227 2.1678 0.0010769 -0.17722 -8.8032E-05 1.9906 0.00098884 496.75021270733765 62.627 0.50908 56.451 56.191 56.7 -6.1757 54 25 3 0 0 0 0.023164 2 40500 40362;40500 60.39 24.345 1 39051000 9225 3840 6391 6517 10561;10562 10562 -0.009856449219000751 EPESMVNLAF 10 Oxidation (M) _EPESM(Oxidation (M))VNLAF_ EPESM(1)VNLAF EPESM(50)VNLAF 0 0 1 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19;nc|ENSG00000172046|O94966-2|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.8101806640625 2 576.765714 1151.51688 NaN NaN NaN NaN NaN NaN NaN 62.424 1 62.424 61.924 62.924 0 0 0 0 0.11618 1 34817 34817 49.933 31.798 1 9226 8176 6392 6518 10563 10563 1386 -0.05282234599167168 EPETAYQF 8 Unmodified _EPETAYQF_ 0 0 0 nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B nc|ENSG00000080854|Q9UPX0|IGSF9B nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2630310058594 2 492.71909 983.423627 -0.63581 -0.00031328 -3.6579 -0.0018023 -4.2937 -0.0021156 492.71676902291944 27.9 0.18249 27.9 27.783 27.965 0 11 8 2 0 0 0 8.7369 1 14366 14366 9.3474 0.75416 1 833580 9227 1310 6393 6519 10564 10564 -0.06874790990093516 EPETTTSFITY 11 Unmodified _EPETTTSFITY_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.801513671875 2 644.800808 1287.58706 0.31287 0.00020174 0.047297 3.0497E-05 0.36017 0.00023224 644.8008436613009 60.052 0.33901 60.052 59.839 60.178 0 35 15 3 0 0 0 0.25654 2 33424 33424;33537 29.082 17.587 1 3540500 9228 8954 6394 6520 10565;10566 10565 -0.04522657729717139 EPEVHWFSI 9 Unmodified _EPEVHWFSI_ 0 0 0 ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2789916992188 2 572.277106 1142.53966 0.43686 0.00025 2.0445 0.00117 2.4813 0.00142 572.2788728805573 58.745 0.32013 58.254 58.049 58.369 -0.49079 21 15 2 0 0 0 0.32871 1 31946 31946 15.847 1.9411 1 5041800 9229 11204 6395 6521 10567 10567 -0.02590847419378406 EPEVHWFSI 9 Unmodified _EPEVHWFSI_ 0 0 0 ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 572.277106 1142.53966 0.50358 0.00028819 1.1676 0.00066822 1.6712 0.0009564 572.2787490138571 58.181 0.34956 58.181 57.99 58.34 0 -0.036806 -0.00073546 NaN 15.847 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1158500 9230 11204 6395 6521 -0.02590847419378406 EPEVLFSGP 9 Unmodified _EPEVLFSGP_ 0 0 0 ENSG00000116745|ENST00000262340|RPE65 ENSG00000116745|ENST00000262340|RPE65 ENSG00000116745|ENST00000262340|RPE65 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.4862060546875 1 974.482939 973.475663 0.30414 0.00029638 -0.37127 -0.00036179 -0.067129 -6.5416E-05 974.4827966988621 52.849 0.25367 52.849 52.728 52.982 0 27 11 3 0 0 0 0.55144 1 29264 29264 4.3292 1.7518 1 5279000 9231 3249 6396 6522 10568 10568 -0.012136275763168669 EPEVSVDESLM 11 Unmodified _EPEVSVDESLM_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.1878662109375 3 412.188438 1233.54348 -0.40636 -0.0001675 -0.81183 -0.00033463 -1.2182 -0.00050213 412.1880731159722 22.627 0.31025 22.627 22.444 22.754 0 46 14 4 0 0 0 0.67477 1 11478 11478 6.6235 1.9075 1 10873000 + 9232 29496 6397 6523 10569 10569 -0.06394590498484831 EPEYMDYY 8 Unmodified _EPEYMDYY_ 0 0 0 REV__ENSG00000091138|ENST00000340010|SLC26A3 REV__ENSG00000091138|ENST00000340010|SLC26A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2784423828125 2 555.21024 1108.40593 1.6135 0.00089582 1.4264 0.00079194 3.0399 0.0016878 555.2111214110544 62.368 0.70306 56.192 55.95 56.653 -6.1757 72 37 3 0 0 0 0.80143 1 40162 40162 5.7604 3.0252 1 17950000 + 9233 17883 6398 6524 10570 10570 -0.14393874307256738 EPFCPLLDKL 10 Unmodified _EPFCPLLDKL_ 0 0 0 REV__ENST00000479317.1_1_10:99147891-99148113:-|nuORF REV__ENST00000479317.1_1_10:99147891-99148113:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.3182373046875 2 587.812467 1173.61038 1.1502 0.00067609 1.0606 0.00062343 2.2108 0.0012995 587.8131272648981 90.677 0.81149 84.501 84.127 84.939 -6.1757 87 48 3 0 0 0 0.21977 1 59719 59719 8.1555 0 1 18375000 + 9234 17271 6399 6525 10571 10571 0.030521095739231896 EPFELSHHF 9 Unmodified _EPFELSHHF_ 0 0 0 ENSG00000147316|ENST00000344683|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 ENSG00000147316|ENST00000344683|MCPH1 MSMS AL20221201_MKP_PDAC_01 4 381.5053100585938 3 381.513696 1141.51926 NaN NaN NaN NaN NaN NaN NaN 36.416 1 32.223 31.723 32.723 -4.1928 0 0 0 0.6032 1 21264 21264 8.1555 0 1 9235 5839 6400 6526 10572 10572 -0.045840180791856255 EPFEYYMYK 9 Unmodified _EPFEYYMYK_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1894226074219 3 423.85473 1268.54236 0.34229 0.00014508 -0.57967 -0.0002457 -0.23738 -0.00010061 423.85445748531987 68.669 0.18849 68.188 68.076 68.264 -0.48071 13 8 2 0 0 0 0.61801 1 37522 37522 0.26902 0 1 1159100 + 9236 23527 6401 6527 10573 10573 -0.08116760076745777 EPFEYYMYK 9 Unmodified _EPFEYYMYK_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 423.85473 1268.54236 0.34229 0.00014508 -0.57967 -0.0002457 -0.23738 -0.00010061 423.85445748531987 68.669 0.18849 68.188 68.076 68.264 -0.48071 0.014995 0.0013166 NaN 0.26902 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1159100 + 9237 23527 6401 6527 -0.08116760076745777 EPFFEYEASF 10 Unmodified _EPFFEYEASF_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7743530273438 2 633.271687 1264.52882 0.12389 7.8455E-05 0.3764 0.00023837 0.50029 0.00031682 633.2719238487398 89.047 0.36024 88.543 88.347 88.707 -0.50423 39 15 3 0 0 0 0.69064 2 48648 48648;48756 3.9444 0.66309 1 1803400 + 9238 23288 6402 6528 10574;10575 10574 -0.0928629458433079 EPFFEYEASF 10 Unmodified _EPFFEYEASF_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3 REV__nc|ENSG00000182670|P53804-3|TTC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7743530273438 2 633.271687 1264.52882 0.12389 7.8455E-05 0.3764 0.00023837 0.50029 0.00031682 633.2719238487398 89.047 0.36024 88.543 88.347 88.707 -0.50423 39 15 3 0 0 0 0.23862 1 48648 48648 3.9444 0.3479 1 1803400 + 9239 23288 6402 6528 10576 10576 -0.0928629458433079 EPFFHGHDNY 10 Unmodified _EPFFHGHDNY_ 0 0 0 ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.79931640625 2 631.764894 1261.51524 -0.48401 -0.00030578 1.606 0.0010146 1.122 0.00070883 631.7661476263431 33.823 0.22128 33.823 33.667 33.888 0 15 10 2 0 0 0 0.23609 1 17731 17731 13.906 9.9617 1 1968800 9240 1938 6403 6529 10577 10577 -0.10506107572905421 EPFFHGHDNY 10 Unmodified _EPFFHGHDNY_ 0 0 0 ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.76611328125 2 631.764894 1261.51524 0.91136 0.00057577 -0.62175 -0.0003928 0.28961 0.00018296 631.7646813694439 37.939 0.21587 33.57 33.456 33.671 -4.3689 15 12 2 0 0 0 0.35999 1 22360 22360 27.223 18.478 1 4132200 9241 1938 6403 6529 10578 10578 -0.10506107572905421 EPFGEISSRY 10 Unmodified _EPFGEISSRY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7830200195312 2 592.782753 1183.55095 0.5034 0.00029841 -0.50842 -0.00030138 -0.0050259 -2.9793E-06 592.7826067465097 45.969 0.60338 45.969 45.787 46.391 0 65 29 4 0 0 0 0.014503 2 25166 25054;25166 80.676 49.408 1 59586000 9242 8367 6404 6530 10579;10580 10580 -0.03348070115907831 EPFGEISSRY 10 Unmodified _EPFGEISSRY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.78271484375 2 592.782753 1183.55095 0.54031 0.00032029 -0.78776 -0.00046697 -0.24745 -0.00014668 592.7820616261488 46.34 0.23094 46.003 45.881 46.112 -0.33664 28 11 3 0 0 0 2.0345E-07 1 24772 24772 140.63 102.46 1 11026000 9243 8367 6404 6530 10581 10581 -0.03348070115907831 EPFKNAWNY 9 Unmodified _EPFKNAWNY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7750854492188 2 584.774731 1167.53491 0.70809 0.00041407 0.72008 0.00042109 1.4282 0.00083516 584.7748154757738 54.575 0.49631 48.709 48.516 49.012 -5.8653 61 30 3 0 0 0 0.2143 1 34675 34675 21.747 0 1 53440000 9244 741 6405 6531 10582 10582 -0.04215731562157998 EPFKSNLLF 9 Unmodified _EPFKSNLLF_ 0 0 0 REV__ENSG00000126603|ENST00000433375|GLIS2 REV__ENSG00000126603|ENST00000433375|GLIS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.798095703125 2 547.797675 1093.5808 0.29866 0.00016361 0.38694 0.00021196 0.6856 0.00037557 547.7978167944322 78.84 0.71968 78.84 78.509 79.229 0 129 33 5 0 0 0 0.37804 1 43793 43793 13.508 0 1 44881000 + 9245 19553 6406 6532 10583 10583 0.03774913620077314 EPFLQDRGEY 10 Unmodified _EPFLQDRGEY_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2935791015625 2 627.293485 1252.57242 0.9574 0.00060057 -0.88167 -0.00055306 0.075734 4.7507E-05 627.293094932478 42.674 0.30885 42.674 42.507 42.816 0 42 15 4 0 0 0 0.043225 1 23085 23085 61.602 30.334 1 25862000 9246 4592;14245 6407 6533 10584 10584 -0.04376685087186161 EPFLQDRGEY 10 Unmodified _EPFLQDRGEY_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.2899780273438 2 627.293485 1252.57242 0.75885 0.00047602 -2.1261 -0.0013337 -1.3672 -0.00085766 627.2914646032693 48.596 0.2795 43.199 43.039 43.318 -5.3961 26 16 2 0 0 0 2.5634E-07 1 30253 30253 139.78 64.021 1 28365000 9247 4592;14245 6407 6533 10585 10585 -0.04376685087186161 EPFNFQMVY 9 Oxidation (M) _EPFNFQM(Oxidation (M))VY_ EPFNFQM(1)VY EPFNFQM(48)VY 0 0 1 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.763671875 2 595.762975 1189.5114 0.51409 0.00030627 -0.23305 -0.00013884 0.28103 0.00016743 595.7630651844748 70.944 0.47771 70.466 70.248 70.726 -0.47736 71 21 4 0 0 0 0.042911 1 38889 38889 48.346 36.105 1 9261600 + 9248 3178;197 6408 6534 10586 10586 15 -0.07577913390969115 EPFNFQMVY 9 Unmodified _EPFNFQMVY_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7669067382812 2 587.765517 1173.51648 0.44564 0.00026193 -0.020702 -1.2168E-05 0.42493 0.00024976 587.7654321314207 84.74 0.38613 84.241 84.076 84.462 -0.49961 27 16 2 0 0 0 0.1773 1 46375 46375 25.399 18.11 1 1283500 + 9249 3178;197 6408 6535 10587 10587 -0.06333609528360284 EPFNFQMVY 9 Unmodified _EPFNFQMVY_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7655639648438 2 587.765517 1173.51648 0.71717 0.00042153 -0.20031 -0.00011773 0.51686 0.00030379 587.7654957858357 92.481 0.74992 86.305 86.02 86.77 -6.1757 70 46 2 0 0 0 0.014417 2 61156 61156;61281 69.105 45.084 1 30498000 + 9250 3178;197 6408 6535 10588;10589 10588 -0.06333609528360284 EPFQDGYSL 9 Unmodified _EPFQDGYSL_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2384643554688 2 528.237647 1054.46074 0.75814 0.00040048 0.017029 8.9956E-06 0.77516 0.00040947 528.2376851022765 57.387 0.33067 57.387 57.201 57.532 0 41 14 4 0 0 0 0.08691 2 31975 31874;31975 36.127 9.1571 1 13168000 9251 7205 6409 6536 10590;10591 10591 -0.06431119444323485 EPFRLGIRF 9 Unmodified _EPFRLGIRF_ 0 0 0 ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.885498046875 3 378.885464 1133.63456 0.77874 0.00029505 0.34086 0.00012915 1.1196 0.0004242 378.88553180724 64.453 0.39001 64.442 64.276 64.666 -0.010529 61 19 4 0 0 0 0.19127 2 35249 35249;35362 22.658 17.761 1 43327000 9252 7128 6410 6537 10592;10593 10592 0.07309130842463674 EPFRLGIRF 9 Unmodified _EPFRLGIRF_ 0 0 0 ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8253173828125 2 567.824558 1133.63456 NaN NaN NaN NaN NaN NaN NaN 64.457 1 64.446 63.946 64.946 -0.010529 0 0 0 0.053277 1 35295 35295 56.177 20.05 1 9253 7128 6410 6537 10594 10594 0.07309130842463674 EPFRLGIRF 9 Unmodified _EPFRLGIRF_ 0 0 0 ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8858032226562 3 378.885464 1133.63456 1.2373 0.00046879 2.6861 0.0010177 3.9234 0.0014865 378.88520842851415 90.298 0.54704 84.122 83.808 84.355 -6.1757 106 31 5 0 0 0 0.07916 2 59669 59587;59669 34.932 27.83 1 114070000 9254 7128 6410 6537 10595;10596 10596 0.07309130842463674 EPFSEEATLF 10 Unmodified _EPFSEEATLF_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.271728515625 2 585.271687 1168.52882 0.10294 6.0251E-05 0.18177 0.00010638 0.28471 0.00016663 585.2717214599429 76.245 0.33325 76.245 76.086 76.419 0 35 13 3 0 0 0 0.1028 2 42348 42348;42444 46.021 30.174 1 4757500 9255 9918 6411 6538 10597;10598 10597 -0.04870294584338808 EPFSEEATLF 10 Unmodified _EPFSEEATLF_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2715454101562 2 585.271687 1168.52882 0.33878 0.00019828 1.2055 0.00070552 1.5442 0.0009038 585.2713695527269 84.538 0.33083 78.362 78.172 78.503 -6.1757 29 18 2 0 0 0 0.33553 1 55626 55626 25.399 12.868 1 11225000 9256 9918 6411 6538 10599 10599 -0.04870294584338808 EPFSGTKSDVY 11 Unmodified _EPFSGTKSDVY_ 0 0 0 ENSG00000159792|ENST00000291041|PSKH1 ENSG00000159792|ENST00000291041|PSKH1 ENSG00000159792|ENST00000291041|PSKH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.2868041992188 2 615.287868 1228.56118 -0.31314 -0.00019267 -0.14851 -9.1379E-05 -0.46166 -0.00028405 615.2877425797143 34.325 0.21547 34.325 34.226 34.442 0 18 10 2 0 0 0 0.43683 1 18080 18080 29.437 14.599 1 3115100 9257 6676 6412 6539 10600 10600 -0.043955071813115865 EPFSSPPEL 9 Unmodified _EPFSSPPEL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB;ENST00000447693.1_1_13:25939939-25940071:-|nuORF nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7423706054688 2 501.742565 1001.47058 0.77292 0.00038781 -0.91134 -0.00045726 -0.13842 -6.945E-05 501.7424811043661 60.043 0.42144 60.043 59.879 60.301 0 44 18 3 0 0 0 0.038285 2 33436 33436;33543 50.855 14.811 1 6632400 9258 2133 6413 6540 10601;10602 10601 -0.030099314389417486 EPFSSPPEL 9 Unmodified _EPFSSPPEL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB;ENST00000447693.1_1_13:25939939-25940071:-|nuORF nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.742919921875 2 501.742565 1001.47058 0.70319 0.00035282 0.2347 0.00011776 0.93789 0.00047058 501.7426554673115 67.918 0.42374 61.743 61.517 61.94 -6.1757 31 24 2 0 0 0 0.042911 1 44251 44251 48.346 8.3885 1 17722000 9259 2133 6413 6540 10603 10603 -0.030099314389417486 EPFTDTHYL 9 Unmodified _EPFTDTHYL_ 0 0 0 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7576293945312 2 561.758746 1121.50294 NaN NaN NaN NaN NaN NaN NaN 50.094 1 50.094 49.594 50.594 0 0 0 0 0.020354 1 27599 27599 77.984 53.964 1 9260 5219 6414 6541 10604 10604 -0.052951440359720436 EPFTDTHYL 9 Unmodified _EPFTDTHYL_ 0 0 0 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.758056640625 2 561.758746 1121.50294 NaN NaN NaN NaN NaN NaN NaN 50.273 1 50.273 49.773 50.773 0 0 0 0 0.071041 1 27708 27708 50.855 27.707 1 9261 5219 6414 6541 10605 10605 -0.052951440359720436 EPFTGSSKILY 11 Unmodified _EPFTGSSKILY_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3251342773438 2 621.324254 1240.63395 0.47617 0.00029586 -0.12104 -7.5208E-05 0.35513 0.00022065 621.3242687374175 52.573 0.27402 52.139 51.985 52.259 -0.43367 43 13 4 0 0 0 0.0018376 2 28364 28364;28476 80.676 53.047 1 27341000 9262 1262 6415 6542 10606;10607 10606 0.023262466120968384 EPFTGSSKILY 11 Unmodified _EPFTGSSKILY_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.324951171875 2 621.324254 1240.63395 1.1946 0.00074222 0.41272 0.00025644 1.6073 0.00099866 621.324609575795 58.652 0.65111 52.578 52.184 52.835 -6.0745 82 35 3 0 0 0 0.010729 2 37668 37532;37668 67.081 28.905 1 84639000 9263 1262 6415 6542 10608;10609 10609 0.023262466120968384 EPFTGSSKILY 11 Unmodified _EPFTGSSKILY_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 621.324254 1240.63395 0.79595 0.00049454 -0.47464 -0.0002949 0.32131 0.00019964 621.3239994681647 52.233 0.22055 52.174 52.047 52.267 -0.058918 0.01728 -0.0003292 NaN 80.676 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2162300 9264 1262 6415 6542 0.023262466120968384 EPFVDEHIQM 10 Unmodified _EPFVDEHIQM_ 0 0 0 REV__ENSG00000160447|ENST00000291906|PKN3 REV__ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2850952148438 2 622.784438 1243.55432 0.83289 0.00051871 -0.35681 -0.00022222 0.47608 0.00029649 622.784402256896 50.747 0.52547 45.098 44.79 45.316 -5.649 74 30 3 0 0 0 0.50362 1 31747 31747 16.149 0.90062 1 184190000 + 9265 21545 6416 6543 10610 10610 -0.057711433335725815 EPFYAVLES 9 Unmodified _EPFYAVLES_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1744689941406 3 352.174569 1053.50188 1.4401 0.00050717 1.3554 0.00047734 2.7955 0.00098451 352.17497859206674 39.599 0.638 35.148 34.782 35.42 -4.4509 90 39 4 0 0 0 0.41742 1 23424 23424 7.609 2.7119 1 64182000 9266 2328 6417 6544 10611 10611 -0.022733584048637567 EPGAYDWT 8 Unmodified _EPGAYDWT_ 0 0 0 nc|ENSG00000241644|O95050-2|INMT;ENSG00000241644|ENST00000013222|INMT nc|ENSG00000241644|O95050-2|INMT nc|ENSG00000241644|O95050-2|INMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.3866577148438 1 938.389039 937.381762 0.1568 0.00014714 -0.37659 -0.00035339 -0.21979 -0.00020625 938.3888203153836 48.067 0.3355 48.067 47.936 48.272 0 34 16 3 0 0 0 0.5284 1 26407 26407 32.117 32.117 1 4894400 9267 10685 6418 6545 10612 10612 -0.08943346678620401 EPGAYDWT 8 Unmodified _EPGAYDWT_ 0 0 0 nc|ENSG00000241644|O95050-2|INMT;ENSG00000241644|ENST00000013222|INMT nc|ENSG00000241644|O95050-2|INMT nc|ENSG00000241644|O95050-2|INMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 938.3900146484375 1 938.389039 937.381762 0.91547 0.00085906 -0.38754 -0.00036367 0.52792 0.0004954 938.388829202518 55.216 0.42617 49.294 49.064 49.49 -5.9211 33 26 2 0 0 0 0.46494 1 35013 35013 38.151 2.0242 1 18525000 9268 10685 6418 6545 10613 10613 -0.08943346678620401 EPGEHILVW 9 Unmodified _EPGEHILVW_ 0 0 0 ENST00000396478.3_1_1:46179937-46180075:-|nuORF ENST00000396478.3_1_1:46179937-46180075:-|nuORF ENST00000396478.3_1_1:46179937-46180075:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.5233154296875 3 360.522192 1078.54475 NaN NaN NaN NaN NaN NaN NaN 46.402 1 41.322 40.822 41.822 -5.0805 0 0 0 0.57317 1 28652 28652 13.042 5.4335 1 9269 12795 6419 6546 10614 10614 0.00861456443226416 EPGGGRSNKR 10 Unmodified _EPGGGRSNKR_ 0 0 0 nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7807006835938 2 529.278503 1056.54245 0.57931 0.00030662 1.4624 0.00077403 2.0417 0.0010806 529.2789880153875 46.153 0.3751 41.198 40.951 41.327 -4.9549 53 24 3 0 0 0 0.22316 1 28325 28325 20.415 8.1739 1 90250000 9270 5834 6420 6547 10615 10615 0.016444207581344017 EPGHSIKITF 10 Unmodified _EPGHSIKITF_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MSMS AL20221201_MKP_PDAC_01 4 564.80615234375 2 564.806031 1127.59751 NaN NaN NaN NaN NaN NaN NaN 79.055 1 72.88 72.38 73.38 -6.1757 0 0 0 0.49971 1 51789 51789 26.268 4.5215 1 9271 7246 6421 6548 10616 10616 0.03881414506031433 EPGLRHTDII 10 Unmodified _EPGLRHTDII_ 0 0 0 REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF REV__ENST00000553678.1_1_14:85995020-85995465:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8173217773438 2 575.814387 1149.61422 NaN NaN NaN NaN NaN NaN NaN 62.322 1 61.834 61.334 62.334 -0.48764 0 0 0 0.80141 1 33954 33954 12.241 1.4167 1 + 9272 28738 6422 6549 10617 10617 0.04539915392001603 EPGLTAMFKEW 11 Unmodified _EPGLTAMFKEW_ 0 0 0 REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF REV__ENST00000473880.5_1_7:102106264-102108393:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8797302246094 3 436.88128 1307.62201 NaN NaN NaN NaN NaN NaN NaN 70.59 1 70.59 70.09 71.09 0 0 0 0 0.94196 1 39328 39328 1.1098 0.41209 1 + 9273 21582 6423 6550 10618 10618 -0.019496934027529278 EPGPAGSKGE 10 Unmodified _EPGPAGSKGE_ 0 0 0 ENSG00000164692|ENST00000297268|COL1A2 ENSG00000164692|ENST00000297268|COL1A2 ENSG00000164692|ENST00000297268|COL1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7230224609375 2 464.722164 927.429775 0.39153 0.00018195 1.2042 0.00055962 1.5957 0.00074157 464.7225648520693 43.636 0.3057 43.636 43.438 43.743 0 35 14 3 0 0 0 0.40136 1 23677 23677 21.537 1.0834 1 71094000 9274 7229 6424 6551 10619 10619 -0.03684272758550833 EPGPAGSKGE 10 Unmodified _EPGPAGSKGE_ 0 0 0 ENSG00000164692|ENST00000297268|COL1A2 ENSG00000164692|ENST00000297268|COL1A2 ENSG00000164692|ENST00000297268|COL1A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7228393554688 2 464.722164 927.429775 1.0342 0.00048062 1.4779 0.00068683 2.5121 0.0011674 464.7227547560802 50.676 0.46038 45.027 44.819 45.28 -5.649 50 28 2 0 0 0 0.38092 1 31850 31850 22.736 0 1 78736000 9275 7229 6424 6551 10620 10620 -0.03684272758550833 EPGPEWQCI 9 Unmodified _EPGPEWQCI_ 0 0 0 REV__ENST00000464365.2_1_1:36934562-36941005:-|nuORF REV__ENST00000464365.2_1_1:36934562-36941005:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2489013671875 2 529.734217 1057.45388 NaN NaN NaN NaN NaN NaN NaN 54.14 1 54.14 53.64 54.64 0 0 0 0 0.6306 1 30042 30042 11.64 0.52583 1 + 9276 19194 6425 6552 10621 10621 -0.07254755596545692 EPGPYMDVVV 10 Unmodified _EPGPYMDVVV_ 0 0 0 nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF nc|ENSG00000183506|A4QPH2|PI4KAP2 nc|ENSG00000183506|A4QPH2|PI4KAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.2118835449219 3 369.179326 1104.51615 0.47775 0.00017638 0.21896 8.0836E-05 0.69671 0.00025721 369.1791282889636 71.316 0.31615 70.839 70.682 70.998 -0.47735 30 13 3 0 0 0 0.23896 1 38994 38994 1.7423 0.14999 1 1593900 9277 12171 6426 6553 10622 10622 -0.03193029248200219 EPGQAIPL 8 Unmodified _EPGQAIPL_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.4564208984375 1 824.451245 823.443968 0.045538 3.7544E-05 0.59062 0.00048694 0.63616 0.00052448 824.451769568818 86.322 0.42474 85.819 85.595 86.02 -0.50318 42 17 3 0 0 0 0.80383 1 47190 47190 4.3292 0 1 2013700 9278 8336 6427 6554 10623 10623 0.025184244603906336 EPGSGARWPQ 10 Unmodified _EPGSGARWPQ_ 0 0 0 ENST00000359236.9_1_12:118541400-118541646:-|nuORF ENST00000359236.9_1_12:118541400-118541646:-|nuORF ENST00000359236.9_1_12:118541400-118541646:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7627563476562 2 542.762155 1083.50976 NaN NaN NaN NaN NaN NaN NaN 61.101 1 61.101 60.601 61.601 0 0 0 0 0.85122 1 34073 34073 10.074 0 1 9279 12141 6428 6555 10624 10624 -0.028657863647140402 EPGSLYIL 8 Unmodified _EPGSLYIL_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.483154296875 1 891.482211 890.474934 0.051252 4.569E-05 1.075 0.00095836 1.1263 0.001004 891.4831365017203 76.556 0.41834 76.556 76.341 76.759 0 24 16 2 0 0 0 0.55032 1 42616 42616 30.225 0 1 447720 9280 3868 6429 6556 10625 10625 0.025315777746413914 EPGSLYIL 8 Unmodified _EPGSLYIL_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 891.4823608398438 1 891.482211 890.474934 -0.98349 -0.00087677 1.4003 0.0012483 0.41677 0.00037154 891.483361725715 77.095 0.48759 76.612 76.297 76.784 -0.48244 26 21 2 0 0 0 0.61462 2 42249 42186;42249 24.674 0 1 462120 9281 3868 6429 6556 10626;10627 10627 0.025315777746413914 EPGSSCCG 8 Unmodified _EPGSSCCG_ 0 0 0 ENST00000541550.5_1_10:75936529-75936631:+|nuORF ENST00000541550.5_1_10:75936529-75936631:+|nuORF ENST00000541550.5_1_10:75936529-75936631:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.884521484375 2 370.122914 738.231275 NaN NaN NaN NaN NaN NaN NaN 15.396 1 15.401 14.901 15.901 0.0057774 0 0 0 0.97444 1 7671 7671 0.79363 0 1 9282 15049 6430 6557 10628 10628 -0.14831152933413705 EPGVEQDKIFQ 11 Unmodified _EPGVEQDKIFQ_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.32080078125 2 645.322242 1288.62993 NaN NaN NaN NaN NaN NaN NaN 89.964 1 89.463 88.963 89.963 -0.50171 0 0 0 0.94184 1 49180 49180 1.1933 0 1 9283 789 6431 6558 10629 10629 -0.0028384288161760196 EPGVVYFVL 9 Unmodified _EPGVVYFVL_ 0 0 0 ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1024.026000976562 1 1022.55571 1021.54843 -0.27118 -0.0002773 1.2943 0.0013235 1.0231 0.0010462 1022.5560021721107 89.352 0.26868 89.352 89.234 89.502 0 20 13 2 0 0 0 0.55775 1 49506 49506 3.9444 3.1508 1 560010 9284 7230 6432 6559 10630 10630 0.03852126217100249 EPGVVYFVL 9 Unmodified _EPGVVYFVL_ 0 0 0 ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2816772460938 2 511.781493 1021.54843 0.29191 0.0001494 -0.21557 -0.00011032 0.076343 3.9071E-05 511.78131461103885 89.891 0.48969 89.389 89.149 89.639 -0.50172 66 25 3 0 0 0 0.55775 1 49254 49254 3.9444 1.6417 1 5813600 9285 7230 6432 6559 10631 10631 0.03852126217100249 EPGVVYFVL 9 Unmodified _EPGVVYFVL_ 0 0 0 ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1022.55571 1021.54843 0.33392 0.00034145 -1.1254 -0.0011508 -0.7915 -0.00080935 1022.5547635583484 89.847 0.45966 89.345 89.127 89.586 -0.50172 -0.0034164 -0.00021131 NaN 3.9444 58 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3045600 9286 7230 6432 6559 0.03852126217100249 EPGYNRIVL 9 Unmodified _EPGYNRIVL_ 0 0 0 REV__nc|ENSG00000061918|Q02153-2|GUCY1B1 REV__nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1978454589844 3 354.197708 1059.57129 -0.34102 -0.00012079 1.5335 0.00054317 1.1925 0.00042238 354.19817818536353 22.107 0.16472 22.107 22.019 22.183 0 14 8 2 0 0 0 0.5029 1 11237 11237 4.5289 1.7937 1 691620 + 9287 17335 6433 6560 10632 10632 0.04389145334562272 EPGYSFVFE 9 Unmodified _EPGYSFVFE_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-2|TNS1;REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2666015625 2 537.742565 1073.47058 0.21538 0.00011582 -2.6117 -0.0014044 -2.3963 -0.0012886 537.7410423394678 37.373 0.14811 37.373 37.296 37.444 0 13 7 2 0 0 0 0.209 1 19868 19868 7.2892 1.0834 1 1895300 + 9288 27649;17644 6434 6561 10633 10633 -0.06321931438947104 EPHADWAKCF 10 Unmodified _EPHADWAKCF_ 0 0 0 nc|ENSG00000157152|Q92777-2|SYN2;ENSG00000157152|ENST00000621198|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 nc|ENSG00000157152|Q92777-2|SYN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2724609375 2 602.266216 1202.51788 -0.028873 -1.7389E-05 1.5589 0.00093885 1.53 0.00092147 602.2670698136942 58.462 0.31573 58.462 58.29 58.606 0 39 12 5 0 0 0 0.60623 1 32530 32530 10.824 2.9138 1 5052500 9289 6503 6435 6562 10634 10634 -0.07527975439620604 EPHDISVAL 9 Unmodified _EPHDISVAL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7571411132812 2 490.756007 979.497461 0.60901 0.00029887 0.33768 0.00016572 0.94669 0.00046459 490.75632143831416 47.554 0.45478 47.554 47.29 47.745 0 50 20 3 0 0 0 0.023164 1 25993 25993 60.39 15.983 1 8615300 9290 7270 6436 6563 10635 10635 0.006891771722393969 EPHDISVAL 9 Unmodified _EPHDISVAL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MSMS AL20221201_MKP_PDAC_01 4 490.7566528320312 2 490.756007 979.497461 NaN NaN NaN NaN NaN NaN NaN 53.511 1 47.707 47.207 48.207 -5.8042 0 0 0 0.15618 1 33830 33830 36.044 1.9418 1 9291 7270 6436 6563 10636 10636 0.006891771722393969 EPHLLDTYA 9 Unmodified _EPHLLDTYA_ 0 0 0 ENSG00000204764|ENST00000523189|RANBP17;ENST00000522380.2_1_5:170346486-170397534:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17 ENSG00000204764|ENST00000523189|RANBP17 ENSG00000204764|ENST00000523189|RANBP17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7625732421875 2 529.761289 1057.50803 NaN NaN NaN NaN NaN NaN NaN 64.588 1 64.102 63.602 64.602 -0.48512 0 0 0 0.46757 1 35239 35239 16.942 5.302 1 9292 10325 6437 6564 10637 10637 -0.018428401733444844 EPHLMVEY 8 Oxidation (M) _EPHLM(Oxidation (M))VEY_ EPHLM(1)VEY EPHLM(57)VEY 0 0 1 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2368774414062 2 517.236593 1032.45863 0.71582 0.00037025 -0.85886 -0.00044423 -0.14305 -7.3989E-05 517.2364041856572 42.493 0.42609 42.493 42.218 42.644 0 61 20 4 0 0 0 0.28922 2 22903 22903;23014 56.541 33.393 1 18074000 9293 4471 6438 6565 10638;10639 10638 816 -0.05629871453788837 EPHLMVEY 8 Unmodified _EPHLMVEY_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2391967773438 2 509.239135 1016.46372 0.94241 0.00047991 -1.7579 -0.00089517 -0.81545 -0.00041526 509.23870129352133 55.58 0.40695 49.659 49.393 49.8 -5.9211 52 24 3 0 0 0 0.24071 1 35310 35310 63.563 41.816 1 19457000 9294 4471 6438 6566 10640 10640 -0.04385567591180006 EPHPVLHEM 9 Unmodified _EPHPVLHEM_ 0 0 0 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.4518737792969 3 363.511298 1087.51206 1.3569 0.00049323 2.8779 0.0010461 4.2347 0.0015394 363.51234367655223 18.404 0.18059 15.782 15.655 15.836 -2.6215 16 13 2 0 0 0 0.20727 1 9680 9680 4.897 2.1618 1 1045000 + 9295 29563 6439 6567 10641 10641 -0.028190739512638174 EPHSKPIKF 9 Unmodified _EPHSKPIKF_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5383911132812 3 361.537953 1081.59203 1.5508 0.00056068 0.019166 6.9293E-06 1.57 0.00056761 361.5381300451815 22.066 0.4354 19.331 19.086 19.522 -2.7348 89 24 5 0 0 0 0.10247 2 11781 11781;11887 24.882 15.498 1 14188000 9296 8176 6440 6568 10642;10643 10642 0.054497357142281544 EPHVVTVTM 9 Oxidation (M) _EPHVVTVTM(Oxidation (M))_ EPHVVTVTM(1) EPHVVTVTM(67) 0 0 1 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7577514648438 2 514.757692 1027.50083 -0.565 -0.00029084 -0.004397 -2.2634E-06 -0.56939 -0.0002931 514.7577125777448 28.448 0.32785 28.448 28.251 28.579 0 34 18 2 0 0 0 0.016184 2 14636 14636;14743 67.344 41.003 1 8939400 9297 10252 6441 6569 10644;10645 10644 1663 -0.011818960453865657 EPHVVTVTM 9 Oxidation (M) _EPHVVTVTM(Oxidation (M))_ EPHVVTVTM(1) EPHVVTVTM(85) 0 0 1 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7586059570312 2 514.757692 1027.50083 0.63848 0.00032866 -0.24899 -0.00012817 0.3895 0.0002005 514.7575578003139 32.721 0.40893 28.865 28.601 29.01 -3.8562 45 21 3 0 0 0 0.0090851 2 18586 18586;18711 85.357 38.436 1 21555000 9298 10252 6441 6569 10646;10647 10646 1663 -0.011818960453865657 EPHVVTVTM 9 Unmodified _EPHVVTVTM_ 0 0 0 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 MSMS AL20221201_MKP_PDAC_01 4 506.7601928710938 2 506.760235 1011.50592 NaN NaN NaN NaN NaN NaN NaN 49.13 1 43.734 43.234 44.234 -5.3961 0 0 0 0.01764 1 30669 30669 81.613 25.072 1 9299 10252 6441 6570 10648 10648 0.0006240781721089661 EPHYMVLEY 9 Oxidation (M) _EPHYM(Oxidation (M))VLEY_ EPHYM(1)VLEY EPHYM(67)VLEY 0 0 1 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43112822-43113530:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7682495117188 2 598.768257 1195.52196 0.42962 0.00025724 -0.46001 -0.00027544 -0.03039 -1.8197E-05 598.7682935449996 47.576 0.34119 47.576 47.384 47.725 0 46 15 4 0 0 0 0.016184 1 26017 26017 67.344 46.89 1 7250300 9300 2906 6442 6571 10649 10649 503 -0.06797930736570379 EPHYMVLEY 9 Oxidation (M) _EPHYM(Oxidation (M))VLEY_ 0 0 1 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF;ENST00000493339.1_1_6:43112822-43113530:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 598.768257 1195.52196 0.51676 0.00030942 -3.5606 -0.002132 -3.0439 -0.0018226 598.7665337933713 47.491 0.19941 47.452 47.34 47.54 -0.038643 -0.061933 -0.0035554 NaN 67.344 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 618410 9301 2906 6442 6571 503 -0.06797930736570379 EPHYQPWSY 9 Unmodified _EPHYQPWSY_ 0 0 0 nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.7649536132812 2 603.764363 1205.51417 0.66606 0.00040214 0.15708 9.4838E-05 0.82314 0.00049698 603.7643920959281 47.287 0.22253 46.934 46.798 47.02 -0.3526 15 10 2 0 0 0 0.05447 1 25348 25348 43.858 29.02 1 2458300 9302 10178 6443 6572 10650 10650 -0.08036321941813185 EPIDLLNVAF 10 Unmodified _EPIDLLNVAF_ 0 0 0 ENSG00000138381|ENST00000260952|ASNSD1 ENSG00000138381|ENST00000260952|ASNSD1 ENSG00000138381|ENST00000260952|ASNSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.80859375 2 565.808239 1129.60193 0.59709 0.00033784 0.78659 0.00044506 1.3837 0.0007829 565.8085690077861 91.321 0.34265 90.827 90.663 91.006 -0.49457 38 15 3 0 0 0 0.65023 1 49880 49880 13.906 0 1 2236000 9303 5045 6444 6573 10651 10651 0.04230878928956372 EPIEILPNVCY 11 Carbamidomethyl (C) _EPIEILPNVC(Carbamidomethyl (C))Y_ EPIEILPNVC(1)Y EPIEILPNVC(86)Y 0 1 0 ENSG00000064726|ENST00000261721|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.8363037109375 2 673.836671 1345.65879 0.9985 0.00067282 -1.2396 -0.00083527 -0.24108 -0.00016245 673.8363002286129 89.626 0.44796 83.451 83.273 83.721 -6.1757 53 24 3 0 0 0 0.00071774 2 59230 59108;59230 86.332 66.97 1 21678000 9304 884 6445 6574 10652;10653 10653 77 -0.00021441576836878085 EPIELSFC 8 Unmodified _EPIELSFC_ 0 0 0 REV__ENST00000264832.7_1_19:10381526-10381682:+|nuORF REV__ENST00000264832.7_1_19:10381526-10381682:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2548522949219 2 469.220411 936.426269 0.69663 0.00032687 -2.6477 -0.0012423 -1.951 -0.00091546 469.2192597438421 60.851 0.2569 60.851 60.718 60.975 0 12 10 2 0 0 0 8.7369 1 33920 33920 4.756 0 1 728160 + 9305 25080 6446 6575 10654 10654 -0.04448658856790644 EPILERPYG 9 Unmodified _EPILERPYG_ 0 0 0 ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 MSMS AL20221201_MKP_PDAC_01 4 358.5256652832031 3 358.525713 1072.55531 NaN NaN NaN NaN NaN NaN NaN 35.268 1 31.173 30.673 31.673 -4.0951 0 0 0 0.6557 1 20433 20433 7.1017 0.47135 1 9306 4664 6447 6576 10655 10655 0.021934390976412033 EPILWIVSY 9 Unmodified _EPILWIVSY_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000463674.5_1_21:42613685-42647548:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3094482421875 2 560.307875 1118.6012 3.3493 0.0018766 -0.95542 -0.00053533 2.3939 0.0013413 560.307429216811 99.746 0.1321 99.709 99.639 99.771 -0.036301 9 4 3 0 0 0 0.078314 1 55420 55420 50.855 31.416 1 7366900 9307 9034 6448 6577 10656 10656 0.04664084279920644 EPILWIVSY 9 Unmodified _EPILWIVSY_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000463674.5_1_21:42613685-42647548:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.308837890625 2 560.307875 1118.6012 1.6052 0.00089941 1.3046 0.00073097 2.9098 0.0016304 560.3081216314621 101.02 0.14256 94.848 94.764 94.907 -6.1757 17 7 3 0 0 0 0.05483 1 67701 67701 57.471 32.797 1 93896000 9308 9034 6448 6577 10657 10657 0.04664084279920644 EPIMIAVI 8 Unmodified _EPIMIAVI_ 0 0 0 REV__nc|ENSG00000170153|Q9ULK6-2|RNF150 REV__nc|ENSG00000170153|Q9ULK6-2|RNF150 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.259765625 2 443.259339 884.504126 1.0712 0.00047481 -0.19737 -8.7487E-05 0.8738 0.00038732 443.25925821987494 99.502 0.21055 93.326 93.188 93.399 -6.1757 22 13 2 0 0 0 0.79669 1 66243 66243 8.5933 3.3626 1 76852000 + 9309 22449 6449 6578 10658 10658 0.05725398799256709 EPIPAGGCTF 10 Carbamidomethyl (C) _EPIPAGGC(Carbamidomethyl (C))TF_ EPIPAGGC(1)TF EPIPAGGC(42)TF 0 1 0 ENSG00000138771|ENST00000296043|SHROOM3 ENSG00000138771|ENST00000296043|SHROOM3 ENSG00000138771|ENST00000296043|SHROOM3 MSMS AL20221201_MKP_PDAC_01 4 524.7404174804688 2 524.742042 1047.46953 NaN NaN NaN NaN NaN NaN NaN 56.319 1 50.342 49.842 50.842 -5.9769 0 0 0 0.21708 1 35926 35926 41.84 9.7227 1 9310 5103 6450 6579 10659 10659 521 -0.0523046907949265 EPIPDIRNQY 10 Unmodified _EPIPDIRNQY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.8173217773438 2 622.817127 1243.6197 0.088023 5.4822E-05 -0.25241 -0.00015721 -0.16439 -0.00010239 622.8169360134185 44.247 0.34554 44.247 44.051 44.397 0 35 17 3 0 0 0 0.011118 2 24114 24005;24114 85.642 59.373 1 21568000 9311 3760 6451 6580 10660;10661 10661 0.007635941838316285 EPIPDIRNQY 10 Unmodified _EPIPDIRNQY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8175659179688 2 622.817127 1243.6197 0.86217 0.00053698 -0.20151 -0.0001255 0.66067 0.00041147 622.8169938218103 50.502 0.40707 44.963 44.71 45.117 -5.5391 67 25 3 0 0 0 0.0093042 2 31573 31573;31718 88.954 49.493 1 55464000 9312 3760 6451 6580 10662;10663 10662 0.007635941838316285 EPIPFSSSM 9 Unmodified _EPIPFSSSM_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;ENSG00000109180|ENST00000264312|OCIAD1 ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7316589355469 2 497.731143 993.447733 0.83842 0.00041731 0.44502 0.0002215 1.2834 0.00063881 497.73119633918856 69.862 0.36613 63.687 63.562 63.928 -6.1757 27 20 2 0 0 0 0.013323 1 45618 45618 71.134 13.662 1 20886000 9313 2637 6452 6581 10664 10664 -0.04925273828052923 EPIQRDPSR 9 Unmodified _EPIQRDPSR_ 0 0 0 REV__ENST00000448276.6_1_17:61919994-61920252:-|nuORF REV__ENST00000448276.6_1_17:61919994-61920252:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2844848632812 2 549.288537 1096.56252 -0.21796 -0.00011972 1.0134 0.00055665 0.79545 0.00043693 549.2881552375502 41.404 0.40451 41.404 41.241 41.645 0 34 20 3 0 0 0 0.07087 1 22438 22438 39.95 1.9757 1 9517200 + 9314 27174 6453 6582 10665 10665 0.018101716980936544 EPIRLFGETDY 11 Unmodified _EPIRLFGETDY_ 0 0 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.330078125 2 670.330067 1338.64558 -0.075167 -5.0386E-05 -0.57644 -0.0003864 -0.6516 -0.00043679 670.3295589375272 62.52 0.22324 62.52 62.432 62.655 0 17 11 2 0 0 0 0.33405 1 34865 34865 24.991 8.8419 1 1646100 9315 7364 6454 6583 10666 10666 -0.010195563645538641 EPIRLFGETDY 11 Unmodified _EPIRLFGETDY_ 0 0 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3297119140625 2 670.330067 1338.64558 NaN NaN NaN NaN NaN NaN NaN 63.07 1 62.584 62.084 63.084 -0.48617 0 0 0 0.61053 1 34391 34391 20.415 4.2654 1 9316 7364 6454 6583 10667 10667 -0.010195563645538641 EPIRMLEIE 9 Unmodified _EPIRMLEIE_ 0 0 0 nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8 nc|ENSG00000100918|O95072-2|REC8 nc|ENSG00000100918|O95072-2|REC8 MSMS AL20221201_MKP_PDAC_01 4 565.3006591796875 2 565.299724 1128.5849 NaN NaN NaN NaN NaN NaN NaN 102.48 1 96.308 95.808 96.808 -6.1757 0 0 0 0.82739 1 68771 68771 4.3292 0 1 9317 1891 6455 6584 10668 10668 0.025746350514964433 EPISPDFYLPV 11 Unmodified _EPISPDFYLPV_ 0 0 0 ENST00000300403.10_1_20:30388876-30389098:+|nuORF ENST00000300403.10_1_20:30388876-30389098:+|nuORF ENST00000300403.10_1_20:30388876-30389098:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8228149414062 2 638.826629 1275.63871 -0.22023 -0.00014069 -3.3888 -0.0021649 -3.6091 -0.0023056 638.8243452885368 56.385 0.17292 56.385 56.322 56.495 0 13 7 2 0 0 0 0.63851 1 31385 31385 9.3831 1.2276 1 1493200 9318 11550 6456 6585 10669 10669 0.011911307548416517 EPIYIITEY 9 Unmodified _EPIYIITEY_ 0 0 0 nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF nc|ENSG00000254087|P07948-2|LYN;ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7951049804688 2 570.794798 1139.57504 0.35119 0.00020046 1.1575 0.00066067 1.5087 0.00086113 570.7949439337156 76.258 0.53259 76.258 75.936 76.468 0 63 22 4 0 0 0 0.019303 2 42358 42358;42460 64.236 46.101 1 12586000 9319 9095;10771 6457 6586 10670;10671 10670 0.010837703177458025 EPIYIITEY 9 Unmodified _EPIYIITEY_ 0 0 0 nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF nc|ENSG00000254087|P07948-2|LYN;ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7965698242188 2 570.794798 1139.57504 0.0084208 4.8066E-06 1.0803 0.00061665 1.0888 0.00062146 570.7957330523934 76.793 0.35639 76.313 76.163 76.52 -0.47945 44 16 4 0 0 0 0.14602 1 42021 42021 28.487 10.352 1 2741100 9320 9095;10771 6457 6586 10672 10672 0.010837703177458025 EPIYIITEY 9 Unmodified _EPIYIITEY_ 0 0 0 nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF nc|ENSG00000254087|P07948-2|LYN;ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7962646484375 2 570.794798 1139.57504 0.91219 0.00052068 0.65682 0.00037491 1.569 0.00089559 570.795174262585 84.17 0.46582 77.994 77.758 78.224 -6.1757 62 25 3 0 0 0 0.0095811 2 55424 55299;55424 81.613 45.569 1 27779000 9321 9095;10771 6457 6586 10673;10674 10674 0.010837703177458025 EPIYIVTEY 9 Unmodified _EPIYIVTEY_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:112015889-112017729:-|nuORF;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000136573|ENST00000259089|BLK;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000010810|P06241-3|FYN;ENSG00000197122|ENST00000373578|SRC nc|ENSG00000010810|P06241-3|FYN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7870483398438 2 563.786973 1125.55939 0.40769 0.00022985 -1.1262 -0.00063493 -0.7185 -0.00040508 563.7869796739471 69.039 0.65124 69.039 68.838 69.489 0 67 28 4 0 0 0 0.1685 2 38527 38425;38527 36.044 17.909 1 14379000 9322 427;9911 6458 6587 10675;10676 10676 0.001634838007248618 EPIYIVTEY 9 Unmodified _EPIYIVTEY_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:112015889-112017729:-|nuORF;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000136573|ENST00000259089|BLK;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000010810|P06241-3|FYN;ENSG00000197122|ENST00000373578|SRC nc|ENSG00000010810|P06241-3|FYN MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.78857421875 2 563.786973 1125.55939 0.43917 0.0002476 1.6709 0.00094202 2.11 0.0011896 563.7881602922629 76.785 0.48798 70.609 70.431 70.919 -6.1757 58 25 3 0 0 0 0.18144 2 50168 50168;50279 34.102 10.352 1 35797000 9323 427;9911 6458 6587 10677;10678 10677 0.001634838007248618 EPIYIVTEY 9 Unmodified _EPIYIVTEY_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:112015889-112017729:-|nuORF;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;ENSG00000136573|ENST00000259089|BLK;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC nc|ENSG00000010810|P06241-3|FYN;ENSG00000197122|ENST00000373578|SRC nc|ENSG00000010810|P06241-3|FYN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.786973 1125.55939 0.91685 0.00051691 0.70603 0.00039805 1.6229 0.00091495 563.7874254599271 69.106 0.19691 69.137 69.03 69.227 0.030914 0.038101 2.377E-05 NaN 36.044 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 680580 9324 427;9911 6458 6587 0.001634838007248618 EPIYPEVVHMF 11 Oxidation (M) _EPIYPEVVHM(Oxidation (M))F_ EPIYPEVVHM(1)F EPIYPEVVHM(42)F 0 0 1 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000553730.5_1_14:102276279-102348623:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.8303833007812 2 688.831388 1375.64822 -0.00089686 -6.1778E-07 -0.80194 -0.0005524 -0.80284 -0.00055302 689.3325259063486 63.373 0.29906 63.373 63.146 63.445 0 29 13 3 0 0 0 0.10551 1 35284 35284 41.84 32.457 1 2217500 9325 1242 6459 6588 10679 10679 207 -0.02457424231283767 EPIYPEVVHMF 11 Oxidation (M) _EPIYPEVVHM(Oxidation (M))F_ EPIYPEVVHM(1)F EPIYPEVVHM(59)F 0 0 1 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000553730.5_1_14:102276279-102348623:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.3309936523438 2 688.831388 1375.64822 0.42991 0.00029613 -0.94308 -0.00064963 -0.51318 -0.00035349 688.8309868969145 63.884 0.31908 63.399 63.213 63.532 -0.48512 28 17 2 0 0 0 0.018566 1 34828 34828 58.679 44.773 1 3596800 9326 1242 6459 6588 10680 10680 207 -0.02457424231283767 EPIYPEVVHMF 11 Unmodified _EPIYPEVVHMF_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000553730.5_1_14:102276279-102348623:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.8353881835938 2 680.833931 1359.65331 0.841 0.00057258 0.88014 0.00059923 1.7211 0.0011718 680.8346473318459 80.621 0.29784 80.128 79.929 80.227 -0.49247 27 11 3 0 0 0 0.35243 1 44122 44122 24.021 18.289 1 733940 9327 1242 6459 6589 10681 10681 -0.012131203686749359 EPIYPEVVHMF 11 Unmodified _EPIYPEVVHMF_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000553730.5_1_14:102276279-102348623:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.3369140625 2 680.833931 1359.65331 1.4769 0.0010055 1.1613 0.00079064 2.6382 0.0017962 680.8353161053584 94.171 0.32749 87.995 87.823 88.151 -6.1757 40 18 3 0 0 0 2.6672E-15 2 62304 62304;62345 139.14 112.87 1 26960000 9328 1242 6459 6589 10682;10683 10682 -0.012131203686749359 EPKEAPAPE 9 Unmodified _EPKEAPAPE_ 0 0 0 nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-3|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2392272949219 2 484.24019 966.465826 NaN NaN NaN NaN NaN NaN NaN 85.485 1 84.984 84.484 85.484 -0.5015 0 0 0 0.41346 1 46782 46782 19.257 0 1 9329 1035 6460 6590 10684 10684 -0.01874815581720668 EPKFPQNYN 9 Unmodified _EPKFPQNYN_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7720336914062 2 568.772188 1135.52982 1.2586 0.00071585 -0.59411 -0.00033791 0.66448 0.00037794 568.7717698846882 55.117 0.90459 49.196 48.956 49.861 -5.9211 124 55 4 0 0 0 0.16226 1 34993 34993 26.884 11.635 1 297270000 9330 2714 6461 6591 10685 10685 -0.03252035424748101 EPKFYLIY 8 Unmodified _EPKFYLIY_ 0 0 0 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2718505859375 2 536.789318 1071.56408 0.25374 0.00013621 1.141 0.00061248 1.3947 0.00074868 537.2915663294445 51.727 0.087753 51.727 51.665 51.753 0 8 3 3 0 0 0 8.7369 1 28602 28602 2.5775 0 1 1138800 + 9331 21410 6462 6592 10686 10686 0.031164127341526182 EPKVLEDMVCC 11 Unmodified _EPKVLEDMVCC_ 0 0 0 REV__nc|ENSG00000005189|Q96IC2-2|REXO5 REV__nc|ENSG00000005189|Q96IC2-2|REXO5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.2850341796875 2 633.28236 1264.55017 NaN NaN NaN NaN NaN NaN NaN 15.724 1 15.724 15.224 16.224 0 0 0 0 0.94338 1 7600 7600 0.30703 0.30703 1 + 9332 16964 6463 6593 10687 10687 -0.07152692143108652 EPLAIVEGY 9 Unmodified _EPLAIVEGY_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2;ENST00000471758.1_1_X:55026837-55029420:+|nuORF ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.51513671875 1 990.514239 989.506963 -0.079278 -7.8526E-05 0.4371 0.00043295 0.35782 0.00035443 990.5147703531321 65.029 0.31619 65.029 64.878 65.194 0 44 14 4 0 0 0 0.0088975 2 36226 36226;36334 104.8 68.755 1 6750900 9333 7844 6464 6594 10688;10689 10688 0.011789454577638026 EPLAIVEGY 9 Unmodified _EPLAIVEGY_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2;ENST00000471758.1_1_X:55026837-55029420:+|nuORF ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7594299316406 2 495.760758 989.506963 0.1277 6.3311E-05 0.0058168 2.8838E-06 0.13352 6.6194E-05 495.76097586104447 65.022 0.23922 65.022 64.878 65.117 0 31 11 4 0 0 0 0.052168 1 36243 36243 44.407 14.182 1 5285700 9334 7844 6464 6594 10690 10690 0.011789454577638026 EPLDNFESL 9 Unmodified _EPLDNFESL_ 0 0 0 ENSG00000112312|ENST00000230056|GMNN ENSG00000112312|ENST00000230056|GMNN ENSG00000112312|ENST00000230056|GMNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2503051757812 2 532.250754 1062.48696 0.39694 0.00021127 -1.4006 -0.00074548 -1.0037 -0.00053421 532.2503418879977 66.092 0.37154 66.092 65.845 66.216 0 37 18 3 0 0 0 0.070838 1 36876 36876 39.957 18.211 1 3340900 9335 2883 6465 6595 10691 10691 -0.0417885027286502 EPLEGDHVF 9 Unmodified _EPLEGDHVF_ 0 0 0 ENSG00000071575|ENST00000155926|TRIB2 ENSG00000071575|ENST00000155926|TRIB2 ENSG00000071575|ENST00000155926|TRIB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7451782226562 2 521.745639 1041.47673 -0.033407 -1.743E-05 -1.4525 -0.00075784 -1.4859 -0.00077527 521.7456283992151 44.701 0.2761 44.701 44.532 44.808 0 35 14 3 0 0 0 0.03327 1 24299 24299 53.576 30.427 1 24404000 9336 1060 6466 6596 10692 10692 -0.04235413207425154 EPLEGLETM 9 Oxidation (M) _EPLEGLETM(Oxidation (M))_ EPLEGLETM(1) EPLEGLETM(44) 0 0 1 nc|ENSG00000103152|P29372-5|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG;nc|ENSG00000103152|P29372-2|MPG nc|ENSG00000103152|P29372-5|MPG nc|ENSG00000103152|P29372-5|MPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.739501953125 2 517.739165 1033.46378 0.15332 7.938E-05 -0.004537 -2.349E-06 0.14878 7.7031E-05 517.7399142034811 43.424 0.30264 43.424 43.262 43.565 0 33 14 3 0 0 0 0.052168 1 23554 23554 44.407 21.259 1 10050000 9337 2106 6467 6597 10693 10693 362 -0.051616123818121196 EPLEGLETMRQ 11 Unmodified _EPLEGLETMRQ_ 0 0 0 nc|ENSG00000103152|P29372-5|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG nc|ENSG00000103152|P29372-5|MPG nc|ENSG00000103152|P29372-5|MPG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.88346 1301.62855 NaN NaN NaN NaN NaN NaN NaN 30.525 1 30.525 30.025 31.025 0 0 0 0 0.94181 1 15863 15863 1.2148 0.80657 1 9338 2106 6468 6598 10694 10694 -0.010198002420111152 EPLEPQQP 8 Unmodified _EPLEPQQP_ 0 0 0 ENSG00000219607|ENST00000405617|PPP1R3G ENSG00000219607|ENST00000405617|PPP1R3G ENSG00000219607|ENST00000405617|PPP1R3G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2343139648438 2 469.234907 936.455261 0.79549 0.00037327 0.16642 7.809E-05 0.96191 0.00045136 469.2348842927277 57.298 0.33461 57.298 57.156 57.49 0 24 14 2 0 0 0 0.80232 1 31979 31979 5.2307 0.90143 1 2669300 9339 10548 6469 6599 10695 10695 -0.015507982361327777 EPLFIQRRD 9 Unmodified _EPLFIQRRD_ 0 0 0 REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8854675292969 3 391.884012 1172.63021 NaN NaN NaN NaN NaN NaN NaN 55.561 1 55.083 54.583 55.583 -0.47798 0 0 0 0.83049 1 30142 30142 2.2828 0 1 + 9340 16977 6470 6600 10696 10696 0.05079621628897257 EPLFLYLCK 9 Unmodified _EPLFLYLCK_ 0 0 0 ENST00000445921.5_1_2:11312097-11317951:+|nuORF ENST00000445921.5_1_2:11312097-11317951:+|nuORF ENST00000445921.5_1_2:11312097-11317951:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5386352539062 3 375.871944 1124.594 -0.15591 -5.8601E-05 2.503 0.00094081 2.3471 0.00088221 375.8731721486633 32.322 0.29131 32.352 32.299 32.591 0.029743 17 11 2 0 0 0 0.21493 1 16937 16937 4.897 2.1618 1 1089400 9341 13460 6471 6601 10697 10697 0.03669028407807673 EPLGATLML 9 Unmodified _EPLGATLML_ 0 0 0 REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5147094726562 1 944.512131 943.504854 0.40573 0.00038322 0.49549 0.00046799 0.90122 0.00085121 944.5126738419658 87.033 0.16606 86.529 86.443 86.609 -0.50318 10 6 2 0 0 0 0.5029 1 47615 47615 7.2892 0 1 237370 + 9342 17267 6472 6602 10698 10698 0.03084193448307815 EPLGEEDDL 9 Unmodified _EPLGEEDDL_ 0 0 0 REV__ENST00000471419.6_1_X:70511819-70517312:+|nuORF REV__ENST00000471419.6_1_X:70511819-70517312:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7265625 2 508.724569 1015.43459 -0.10431 -5.3067E-05 0.62157 0.00031621 0.51725 0.00026314 508.72524562760793 66.451 0.20548 65.967 65.925 66.13 -0.48323 13 9 2 0 0 0 0.49272 1 36313 36313 7.9102 0 1 781080 + 9343 20869 6473 6603 10699 10699 -0.07251433406463548 EPLGGKLLEEY 11 Unmodified _EPLGGKLLEEY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161088576-161089334:+|nuORF;ENST00000491497.1_1_1:161088534-161089257:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.329833984375 2 624.329536 1246.64452 0.47191 0.00029463 -0.05357 -3.3445E-05 0.41834 0.00026118 624.3295251502012 57.931 0.30428 57.931 57.754 58.058 0 38 12 4 0 0 0 0.11933 2 32194 32194;32305 40.239 15.248 1 8930700 9344 16306 6474 6604 10700;10701 10700 0.031062292665410496 EPLGGKLLEEY 11 Unmodified _EPLGGKLLEEY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161088576-161089334:+|nuORF;ENST00000491497.1_1_1:161088534-161089257:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 624.329536 1246.64452 0.17964 0.00011215 0.83894 0.00052377 1.0186 0.00063593 624.3298380583655 58.444 0.10687 57.953 57.921 58.028 -0.49079 0.011061 0.0010476 NaN 40.239 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1281500 9345 16306 6474 6604 0.031062292665410496 EPLGLHCTFI 10 Unmodified _EPLGLHCTFI_ 0 0 0 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8159790039062 2 565.289159 1128.56377 0.44642 0.00025236 -0.68526 -0.00038737 -0.23884 -0.00013501 565.2894185182556 76.188 0.24096 75.709 75.594 75.835 -0.47945 16 9 2 0 0 0 0.23896 1 41753 41753 3.5965 0 1 491310 9346 5432 6475 6605 10702 10702 0.004626697426374449 EPLGRVSFELF 11 Unmodified _EPLGRVSFELF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3453979492188 2 647.34552 1292.67649 0.31312 0.0002027 -1.6564 -0.0010723 -1.3433 -0.00086956 647.3444756113098 83.531 0.21437 83.594 83.491 83.706 0.063171 11 7 2 0 0 0 0.08701 1 46223 46223 43.982 7.4756 1 3913100 9347 9789 6476 6606 10703 10703 0.041856417403323576 EPLGRVSFELF 11 Unmodified _EPLGRVSFELF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3451538085938 2 647.34552 1292.67649 1.4727 0.00095333 -0.66578 -0.00043099 0.8069 0.00052234 647.3451685004455 98.24 0.19412 92.064 91.968 92.163 -6.1757 28 12 3 0 0 0 0.014324 1 65132 65132 63.227 17.528 1 68390000 9348 9789 6476 6606 10704 10704 0.041856417403323576 EPLHNVQVL 9 Unmodified _EPLHNVQVL_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.792236328125 2 524.792924 1047.57129 0.36542 0.00019177 -0.53679 -0.0002817 -0.17137 -8.9936E-05 524.7926422495274 45.517 0.47402 45.517 45.345 45.819 0 80 25 5 0 0 0 0.047714 1 24750 24750 49.933 13.806 1 270500000 9349 7898 6477 6607 10705 10705 0.049411453345555856 EPLHNVQVL 9 Unmodified _EPLHNVQVL_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7930297851562 2 524.792924 1047.57129 0.71598 0.00037574 -0.9866 -0.00051776 -0.27062 -0.00014202 524.7923907936228 51.596 0.53635 45.947 45.656 46.192 -5.649 89 33 3 0 0 0 0.021948 2 32484 32361;32484 68.081 14.505 1 436920000 9350 7898 6477 6607 10706;10707 10707 0.049411453345555856 EPLHSPDS 8 Unmodified _EPLHSPDS_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;THUMPD2-RALGAPA1|1|fusion;THUMPD2-RALGAPA1|2|fusion;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1 nc|ENSG00000174373|Q6GYQ0|RALGAPA1 nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2063598632812 2 441.203607 880.392661 -0.12071 -5.3256E-05 1.1788 0.00052009 1.0581 0.00046683 441.2043270712485 22.727 1.1651 22.727 22.324 23.489 0 123 59 3 0 0 0 0.79669 1 11467 11467 8.5933 0 1 3567600 9351 8416 6478 6608 10708 10708 -0.052319443043188585 EPLINVTAF 9 Unmodified _EPLINVTAF_ 0 0 0 REV__nc|ENSG00000034677|Q9NV58-3|RNF19A REV__nc|ENSG00000034677|Q9NV58-3|RNF19A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2774963378906 2 502.276575 1002.5386 0.55494 0.00027873 0.45513 0.0002286 1.0101 0.00050734 502.2768408135838 68.715 0.3768 68.715 68.487 68.864 0 36 16 3 0 0 0 0.28023 1 38242 38242 18.146 3.3081 1 2416000 + 9352 17161 6479 6609 10709 10709 0.03742938211712499 EPLINVTAF 9 Unmodified _EPLINVTAF_ 0 0 0 REV__nc|ENSG00000034677|Q9NV58-3|RNF19A REV__nc|ENSG00000034677|Q9NV58-3|RNF19A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2783813476562 2 502.276575 1002.5386 -0.21168 -0.00010632 0.22223 0.00011162 0.010551 5.2994E-06 502.2773569880153 69.069 0.30268 68.588 68.485 68.788 -0.48071 17 12 2 0 0 0 0.34999 1 37765 37765 14.838 1.3304 1 819830 + 9353 17161 6479 6609 10710 10710 0.03742938211712499 EPLINVTAF 9 Unmodified _EPLINVTAF_ 0 0 0 REV__nc|ENSG00000034677|Q9NV58-3|RNF19A REV__nc|ENSG00000034677|Q9NV58-3|RNF19A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.276575 1002.5386 -0.21168 -0.00010632 0.22223 0.00011162 0.010551 5.2994E-06 502.2773569880153 69.069 0.30268 68.588 68.485 68.788 -0.48071 -0.063419 -0.0002108 NaN 18.146 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 819830 + 9354 17161 6479 6609 0.03742938211712499 EPLKELMKL 9 Unmodified _EPLKELMKL_ 0 0 0 REV__ENST00000468892.5_1_3:183907488-183910505:+|nuORF REV__ENST00000468892.5_1_3:183907488-183910505:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5514526367188 3 367.550982 1099.63112 1.7436 0.00064086 0.6699 0.00024622 2.4135 0.00088708 367.55113596742893 55.109 0.42471 49.188 48.956 49.381 -5.9211 44 26 3 0 0 0 0.20428 1 35015 35015 16.566 0 1 27040000 + 9355 21588 6480 6610 10711 10711 0.08528699953603791 EPLKMTCPIL 10 Unmodified _EPLKMTCPIL_ 0 0 0 REV__nc|ENSG00000168944|Q8N960-2|CEP120 REV__nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2099304199219 3 382.208339 1143.60319 1.2152 0.00046448 2.152 0.00082253 3.3673 0.001287 382.2095706009709 18.685 0.17707 16.064 15.962 16.139 -2.6215 28 16 3 0 0 0 0.65023 1 9831 9831 8.4443 3.9154 1 1716000 + 9356 22363 6481 6611 10712 10712 0.037130537018356335 EPLLIDEDYY 10 Unmodified _EPLLIDEDYY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.2974853515625 2 635.297901 1268.58125 0.29571 0.00018786 0.32801 0.00020839 0.62372 0.00039625 635.2979036436894 72.818 0.2689 72.818 72.676 72.945 0 17 13 2 0 0 0 0.66569 1 40536 40536 6.7232 3.4419 1 718900 9357 3132 6482 6612 10713 10713 -0.04229756241352334 EPLLQGNPL 9 Unmodified _EPLLQGNPL_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7752990722656 2 490.7742 979.533846 NaN NaN NaN NaN NaN NaN NaN 96.523 1 96.219 95.719 96.719 -0.30472 0 0 0 0.84737 1 52713 52713 1.8442 0 1 + 9358 22400 6483 6613 10714 10714 0.04326054068940266 EPLLVVAAF 9 Unmodified _EPLLVVAAF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 958.5630493164062 1 958.560795 957.553519 0.28179 0.00027011 -0.023507 -2.2532E-05 0.25828 0.00024758 958.5603744941488 96.496 0.32073 96.192 96.045 96.366 -0.30472 33 20 2 0 0 0 0.095405 2 52647 52647;52746 34.102 12.356 1 663580 9359 7093 6484 6614 10715;10716 10715 0.07304430079705071 EPLLVVAAF 9 Unmodified _EPLLVVAAF_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7839660644531 2 479.784036 957.553519 0.7044 0.00033796 -0.54463 -0.00026131 0.15977 7.6653E-05 479.78400787965745 100.59 0.11533 94.412 94.33 94.445 -6.1757 13 7 2 0 0 0 0.019303 1 67293 67293 64.236 6.765 1 17084000 9360 7093 6484 6614 10717 10717 0.07304430079705071 EPLNATSKR 9 Unmodified _EPLNATSKR_ 0 0 0 REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP REV__nc|ENSG00000175513|Q3SY00-2|TSGA10IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2802124023438 2 508.28018 1014.54581 0.14425 7.3319E-05 0.23998 0.00012198 0.38423 0.0001953 508.28015720033204 90.223 0.43414 89.721 89.492 89.926 -0.50171 50 20 4 0 0 0 0.59218 1 49273 49273 1.8442 1.8442 1 2809600 + 9361 22876 6485 6615 10718 10718 0.03911670812135526 EPLNIKDAY 9 Unmodified _EPLNIKDAY_ 0 0 0 ENSG00000138735|ENST00000354960|PDE5A;nc|ENSG00000138735|O76074-2|PDE5A ENSG00000138735|ENST00000354960|PDE5A ENSG00000138735|ENST00000354960|PDE5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7772827148438 2 531.776939 1061.53933 0.020759 1.1039E-05 0.26482 0.00014082 0.28558 0.00015186 531.777171097929 41.868 0.28259 41.868 41.709 41.992 0 35 14 3 0 0 0 0.05483 1 22620 22620 43.772 17.504 1 9003600 9362 5093 6486 6616 10719 10719 0.011017328607522359 EPLPDEWSL 9 Unmodified _EPLPDEWSL_ 0 0 0 REV__ENST00000414563.6_1_6:157802226-157802931:+|nuORF REV__ENST00000414563.6_1_6:157802226-157802931:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2608032226562 2 543.261122 1084.50769 0.40922 0.00022231 -0.54249 -0.00029471 -0.13327 -7.2402E-05 543.2608129770318 66.639 0.70058 66.639 66.195 66.896 0 58 31 2 0 0 0 0.49272 1 36983 36983 7.9102 1.187 1 5503700 + 9363 26748 6487 6617 10720 10720 -0.03118259893199138 EPLPENVKF 9 Unmodified _EPLPENVKF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7880249023438 2 536.787307 1071.56006 0.73088 0.00039233 0.90711 0.00048692 1.638 0.00087925 536.7878083315977 51.41 0.37314 51.41 51.167 51.54 0 63 16 5 0 0 0 0.094149 1 28390 28390 34.402 19.563 1 18243000 9364 10191 6488 6618 10721 10721 0.027143232404114315 EPLPENVKF 9 Unmodified _EPLPENVKF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7875366210938 2 536.787307 1071.56006 0.83842 0.00045005 0.47786 0.00025651 1.3163 0.00070656 536.7874621031651 57.691 0.35919 51.664 51.428 51.787 -6.0275 52 19 4 0 0 0 0.013041 1 36922 36922 71.922 35.795 1 53517000 9365 10191 6488 6618 10722 10722 0.027143232404114315 EPLPENVKF 9 Unmodified _EPLPENVKF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.787307 1071.56006 0.11348 6.0914E-05 -1.1229 -0.00060277 -1.0094 -0.00054185 536.7872787410471 51.8 0.36072 51.742 51.494 51.854 -0.058918 0.13631 -0.0017123 NaN 71.922 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 4468100 9366 10191 6488 6618 0.027143232404114315 EPLPENVKFYY 11 Unmodified _EPLPENVKFYY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.8511962890625 2 699.850635 1397.68672 -0.035647 -2.4947E-05 -0.15002 -0.00010499 -0.18567 -0.00012994 699.8502959886208 62.867 0.39392 62.867 62.679 63.073 0 25 16 2 0 0 0 0.65108 1 35056 35056 8.7454 1.1365 1 734850 9367 10191 6489 6619 10723 10723 0.003782046749165602 EPLPENVKFYY 11 Unmodified _EPLPENVKFYY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.8500366210938 2 699.850635 1397.68672 0.21616 0.00015128 0.010284 7.197E-06 0.22644 0.00015847 699.85066013103 63.489 0.54892 63.003 62.622 63.171 -0.48617 47 24 3 0 0 0 0.39949 2 34584 34584;34694 21.537 16.24 1 2006300 9368 10191 6489 6619 10724;10725 10724 0.003782046749165602 EPLPENVKFYY 11 Unmodified _EPLPENVKFYY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MSMS AL20221201_MKP_PDAC_01 4 699.849365234375 2 699.850635 1397.68672 NaN NaN NaN NaN NaN NaN NaN 69.994 1 63.818 63.318 64.318 -6.1757 0 0 0 2.9283E-09 1 45718 45718 107.1 51.597 1 9369 10191 6489 6619 10726 10726 0.003782046749165602 EPLPEYPPAF 10 Unmodified _EPLPEYPPAF_ 0 0 0 REV__ENSG00000198900|ENST00000361337|TOP1 REV__ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2871704101562 2 580.28714 1158.55973 -0.16985 -9.8561E-05 -0.13685 -7.9414E-05 -0.3067 -0.00017797 580.2870618918827 71.243 0.32185 71.243 71.041 71.363 0 29 15 3 0 0 0 0.5905 1 39645 39645 11.64 0.81637 1 737240 + 9370 24096 6490 6620 10727 10727 -0.013210964794325264 EPLPEYPPAF 10 Unmodified _EPLPEYPPAF_ 0 0 0 REV__ENSG00000198900|ENST00000361337|TOP1 REV__ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2881469726562 2 580.28714 1158.55973 0.52974 0.0003074 0.23679 0.00013741 0.76654 0.00044481 580.2876544186238 71.632 0.7328 71.155 70.792 71.525 -0.47609 94 29 5 0 0 0 0.5905 1 39343 39343 11.64 0.81637 1 12098000 + 9371 24096 6490 6620 10728 10728 -0.013210964794325264 EPLPEYPPAF 10 Unmodified _EPLPEYPPAF_ 0 0 0 REV__ENSG00000198900|ENST00000361337|TOP1 REV__ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2882080078125 2 580.28714 1158.55973 0.59257 0.00034386 -1.0123 -0.0005874 -0.41969 -0.00024354 580.2858522932835 72.146 0.55082 71.67 71.469 72.02 -0.4761 47 24 3 0 0 0 0.60623 1 39441 39441 10.824 0.75 1 2561600 + 9372 24096 6490 6620 10729 10729 -0.013210964794325264 EPLPFRDIS 9 Unmodified _EPLPFRDIS_ 0 0 0 REV__ENSG00000185522|ENST00000329451|LMNTD2 REV__ENSG00000185522|ENST00000329451|LMNTD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7982788085938 2 537.284931 1072.55531 -0.43107 -0.00023161 0.70316 0.00037779 0.27208 0.00014619 537.2867450736196 28.635 0.16421 28.635 28.558 28.723 0 17 7 3 0 0 0 0.17275 1 14782 14782 21.747 10.923 1 2559800 + 9373 23507 6491 6621 10730 10730 0.021934390976639406 EPLPITGPEY 10 Unmodified _EPLPITGPEY_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2860717773438 2 558.284597 1114.55464 0.38341 0.00021405 2.3273 0.0012993 2.7107 0.0015134 558.2854404454432 61.64 0.84688 61.64 61.275 62.122 0 85 37 3 0 0 0 0.0045909 2 34304 34304;34414 99.799 72.915 1 5511100 9374 789 6492 6622 10731;10732 10731 0.0019459965797068435 EPLPPLQFGL 10 Unmodified _EPLPPLQFGL_ 0 0 0 REV__ENSG00000107159|ENST00000378357|CA9 REV__ENSG00000107159|ENST00000378357|CA9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.2852783203125 2 555.813325 1109.6121 0.71928 0.00039979 -0.035761 -1.9876E-05 0.68352 0.00037991 555.813265923135 67.635 0.45121 61.459 61.255 61.707 -6.1757 43 25 2 0 0 0 0.23412 1 44149 44149 9.3831 2.0939 1 24285000 + 9375 18552 6493 6623 10733 10733 0.06167486654203458 EPLPTHPVTY 10 Unmodified _EPLPTHPVTY_ 0 0 0 ENST00000405015.7_1_2:62934058-62934148:+|nuORF ENST00000405015.7_1_2:62934058-62934148:+|nuORF ENST00000405015.7_1_2:62934058-62934148:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.29443359375 2 577.298039 1152.58152 0.0011778 6.7997E-07 -2.6539 -0.0015321 -2.6527 -0.0015314 577.2961754221869 40.571 0.20768 40.571 40.451 40.659 0 18 10 2 0 0 0 0.16524 1 21804 21804 37.974 7.3375 1 3127800 9376 12918 6494 6624 10734 10734 0.011337082691625255 EPLPTHPVTY 10 Unmodified _EPLPTHPVTY_ 0 0 0 ENST00000405015.7_1_2:62934058-62934148:+|nuORF ENST00000405015.7_1_2:62934058-62934148:+|nuORF ENST00000405015.7_1_2:62934058-62934148:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2979736328125 2 577.298039 1152.58152 0.5077 0.00029309 -0.86854 -0.00050141 -0.36085 -0.00020832 577.2980301713335 46.419 0.19739 41.338 41.175 41.372 -5.0805 17 13 2 0 0 0 0.04925 1 28619 28619 58.679 22.552 1 17156000 9377 12918 6494 6624 10735 10735 0.011337082691625255 EPLPYQPTF 9 Unmodified _EPLPYQPTF_ 0 0 0 nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2730712890625 2 546.274032 1090.53351 0.25208 0.0001377 0.3563 0.00019464 0.60838 0.00033234 546.2741841998609 80.522 0.45993 80.522 80.38 80.84 0 35 22 2 0 0 0 0.55144 1 44809 44809 4.3292 2.0265 1 1665700 9378 10144 6495 6625 10736 10736 -0.008133656509016873 EPLQQVIQF 9 Unmodified _EPLQQVIQF_ 0 0 0 ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13;ENST00000492626.5_1_7:17929984-17937021:-|nuORF;ENST00000482558.5_1_7:17908017-17937021:-|nuORF ENSG00000071189|ENST00000428135|SNX13 ENSG00000071189|ENST00000428135|SNX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.3013305664062 2 551.300581 1100.58661 0.39339 0.00021688 0.086841 4.7876E-05 0.48023 0.00026475 551.3003692230418 76.757 0.40539 76.757 76.468 76.874 0 32 16 2 0 0 0 0.51218 1 42592 42592 6.7232 1.8262 1 1071900 9379 1053 6496 6626 10737 10737 0.04034012131751297 EPLQQVIQF 9 Unmodified _EPLQQVIQF_ 0 0 0 ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13;ENST00000492626.5_1_7:17929984-17937021:-|nuORF;ENST00000482558.5_1_7:17908017-17937021:-|nuORF ENSG00000071189|ENST00000428135|SNX13 ENSG00000071189|ENST00000428135|SNX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2996215820312 2 551.300581 1100.58661 -0.41736 -0.00023009 0.7791 0.00042952 0.36175 0.00019943 551.3009534838528 77.279 0.4811 76.797 76.517 76.998 -0.4826 68 21 4 0 0 0 0.43463 1 42198 42198 10.824 2.6684 1 11555000 9380 1053 6496 6626 10738 10738 0.04034012131751297 EPLQVVEMY 9 Oxidation (M) _EPLQVVEM(Oxidation (M))Y_ EPLQVVEM(1)Y EPLQVVEM(42)Y 0 0 1 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2694091796875 2 562.270632 1122.52671 -0.3987 -0.00022418 0.27772 0.00015616 -0.12098 -6.8025E-05 562.2709527747872 55.684 0.36179 55.684 55.531 55.892 0 46 32 2 0 0 0 0.06294 1 30899 30899 41.84 25.992 1 6922200 9381 1161 6497 6627 10739 10739 194 -0.029650465937720583 EPLRDFSAM 9 Oxidation (M) _EPLRDFSAM(Oxidation (M))_ EPLRDFSAM(1) EPLRDFSAM(72) 0 0 1 nc|ENSG00000163950|Q14493-2|SLBP;ENSG00000163950|ENST00000489418|SLBP nc|ENSG00000163950|Q14493-2|SLBP nc|ENSG00000163950|Q14493-2|SLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2492065429688 2 541.252774 1080.491 -0.34965 -0.00018925 -1.2361 -0.00066905 -1.5858 -0.0008583 541.2522349011109 33.631 0.39455 33.631 33.494 33.888 0 81 31 4 0 0 0 0.013118 1 17595 17595 71.708 7.7474 1 96721000 9382 7105 6498 6628 10740 10740 1223 -0.0460308405079104 EPLRDFSAM 9 Oxidation (M) _EPLRDFSAM(Oxidation (M))_ EPLRDFSAM(1) EPLRDFSAM(74) 0 0 1 nc|ENSG00000163950|Q14493-2|SLBP;ENSG00000163950|ENST00000489418|SLBP nc|ENSG00000163950|Q14493-2|SLBP nc|ENSG00000163950|Q14493-2|SLBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.252197265625 2 541.252774 1080.491 0.21273 0.00011514 -0.60278 -0.00032626 -0.39005 -0.00021111 541.2527422852737 38.677 0.44963 34.248 34.079 34.528 -4.4283 48 28 2 0 0 0 0.012228 1 22806 22806 74.2 7.743 1 116630000 9383 7105 6498 6628 10741 10741 1223 -0.0460308405079104 EPLRDFSAM 9 Unmodified _EPLRDFSAM_ 0 0 0 nc|ENSG00000163950|Q14493-2|SLBP;ENSG00000163950|ENST00000489418|SLBP nc|ENSG00000163950|Q14493-2|SLBP nc|ENSG00000163950|Q14493-2|SLBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2556762695312 2 533.255317 1064.49608 0.55287 0.00029482 0.9773 0.00052115 1.5302 0.00081597 533.2552306094168 53.246 0.4967 47.442 47.179 47.676 -5.8042 125 30 5 0 0 0 0.018061 3 33533 33479;33533;33657 65.474 7.7517 1 188310000 9384 7105 6498 6629 10742;10743;10744 10743 -0.033587801881594714 EPLRELLKRQ 10 Unmodified _EPLRELLKRQ_ 0 0 0 REV__ENSG00000009413|ENST00000368802|REV3L REV__ENSG00000009413|ENST00000368802|REV3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.3865966796875 2 641.385511 1280.75647 2.2604 0.0014498 -1.5564 -0.00099826 0.70394 0.0004515 641.3844393713968 95.601 0.62479 95.605 95.379 96.004 0.004158 44 23 3 0 0 0 0.71042 1 53082 53082 3.5965 2.267 1 2448500 + 9385 17033 6499 6630 10745 10745 0.12732128134189225 EPLRPGPAL 9 Unmodified _EPLRPGPAL_ 0 0 0 ENSG00000213999|ENST00000424583|MEF2B;ENST00000409224.5_1_19:19256608-19257444:-|nuORF ENSG00000213999|ENST00000424583|MEF2B ENSG00000213999|ENST00000424583|MEF2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2765502929688 2 475.276909 948.539266 0.31484 0.00014964 -1.2937 -0.00061487 -0.97886 -0.00046523 475.2763010670303 39.465 0.18897 39.465 39.341 39.53 0 15 8 2 0 0 0 0.28047 1 21179 21179 18.135 4.6271 1 1824100 9386 10473 6500 6631 10746 10746 0.06293777651421806 EPLSEQVQN 9 Unmodified _EPLSEQVQN_ 0 0 0 REV__ENSG00000055957|ENST00000273283|ITIH1 REV__ENSG00000055957|ENST00000273283|ITIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.25537109375 2 522.253828 1042.4931 0.94698 0.00049457 0.76476 0.0003994 1.7117 0.00089397 522.2539379578873 54.143 0.47542 54.143 53.876 54.352 0 54 21 3 0 0 0 0.094149 1 29943 29943 34.402 5.9072 1 75363000 + 9387 17293 6501 6632 10747 10747 -0.026443320413136462 EPLSLPTF 8 Unmodified _EPLSLPTF_ 0 0 0 ENST00000494222.5_1_10:124157443-124172478:+|nuORF;ENST00000368990.7_2_10:124152762-124159877:+|nuORF ENST00000494222.5_1_10:124157443-124172478:+|nuORF ENST00000494222.5_1_10:124157443-124172478:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2459411621094 2 452.244744 902.474934 1.1004 0.00049765 1.3306 0.00060175 2.431 0.0010994 452.2453369581914 83.83 0.51006 77.655 77.287 77.798 -6.1757 35 26 2 0 0 0 0.44122 1 55152 55152 40.449 8.3316 1 7954800 9388 12289 6502 6633 10748 10748 0.019795777746253407 EPLSQITAY 9 Unmodified _EPLSQITAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2635498046875 2 511.263665 1020.51278 -0.11279 -5.7664E-05 -0.22123 -0.00011311 -0.33402 -0.00017077 511.2634933581978 54.725 0.4149 54.258 54.025 54.44 -0.46664 58 20 4 0 0 0 0.070838 1 29709 29709 39.957 1.7818 1 66455000 9389 8367 6503 6634 10749 10749 0.003340439694284214 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.81298828125 2 531.813325 1061.6121 -0.26935 -0.00014325 -0.072457 -3.8533E-05 -0.34181 -0.00018178 531.813340505567 33.245 0.25766 33.245 33.088 33.345 0 30 12 3 0 0 0 0.10247 1 17393 17393 32.786 13.529 1 4050300 9390 10331 6504 6635 10750 10750 0.08375486654176711 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.8779907226562 3 354.877975 1061.6121 -0.5175 -0.00018365 0.56836 0.0002017 0.050855 1.8047E-05 354.8781563811524 33.254 0.27687 33.254 33.088 33.365 0 40 13 4 0 0 0 0.30202 1 17428 17428 12.175 7.9852 1 8656800 9391 10331 6504 6635 10751 10751 0.08375486654176711 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8131713867188 2 531.813325 1061.6121 -0.31232 -0.0001661 1.1575 0.00061556 0.84514 0.00044946 531.8139006138719 33.342 0.24467 33.183 33.052 33.297 -0.15918 14 9 3 0 0 0 0.51218 1 17397 17397 6.7232 1.9672 1 1735800 9392 10331 6504 6635 10752 10752 0.08375486654176711 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8782348632812 3 354.877975 1061.6121 1.9212 0.0006818 -0.69093 -0.0002452 1.2303 0.0004366 354.87768030069105 37.528 0.45934 33.245 32.991 33.45 -4.2835 69 27 3 0 0 0 0.1685 2 22074 21949;22074 19.626 12.524 1 47359000 9393 10331 6504 6635 10753;10754 10754 0.08375486654176711 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8151245117188 2 531.813325 1061.6121 1.2054 0.00064106 -0.78152 -0.00041562 0.4239 0.00022543 531.8126994989996 37.53 0.31539 33.246 33.072 33.387 -4.2835 46 18 3 0 0 0 0.029718 2 21985 21985;22110 55.503 13.663 1 29584000 9394 10331 6504 6635 10755;10756 10755 0.08375486654176711 EPLTKAIKY 9 Unmodified _EPLTKAIKY_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74593906-74595252:-|nuORF nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 354.877975 1061.6121 -0.28045 -9.9525E-05 1.1114 0.0003944 0.83092 0.00029488 354.87831551452064 33.348 0.24467 33.189 33.052 33.297 -0.15918 -0.04013 0.00091223 NaN 19.626 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3659900 9395 10331 6504 6635 0.08375486654176711 EPLWQILL 8 Unmodified _EPLWQILL_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2991638183594 2 506.29731 1010.58007 1.0724 0.00054295 1.4104 0.00071406 2.4828 0.001257 506.2984816626866 94.593 1.3326 88.417 87.898 89.23 -6.1757 230 76 4 0 0 0 0.50673 1 62893 62893 34.102 1.797 1 133550000 + 9396 20707 6505 6636 10757 10757 0.0752011897105831 EPLWYTEPI 9 Unmodified _EPLWYTEPI_ 0 0 0 ENSG00000170871|ENST00000307659|KIAA0232 ENSG00000170871|ENST00000307659|KIAA0232 ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2860717773438 2 574.28714 1146.55973 0.38484 0.00022101 -2.9327 -0.0016842 -2.5479 -0.0014632 574.2852892653316 63.812 0.24643 63.812 63.659 63.906 0 16 9 2 0 0 0 0.2143 1 35572 35572 21.747 10.106 1 1159900 9397 8035 6506 6637 10758 10758 -0.007690964794164756 EPLYVFRHFKP 11 Unmodified _EPLYVFRHFKP_ 0 0 0 REV__ENSG00000255690|ENST00000539664|TRIL REV__ENSG00000255690|ENST00000539664|TRIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.9490661621094 4 358.948853 1431.76631 1.3353 0.00047931 -0.054325 -1.95E-05 1.281 0.00045981 358.9488381738488 18.229 0.71243 15.607 15.301 16.014 -2.6215 190 62 4 0 0 0 0.71728 3 9459 9459;9560;9662 2.6312 0.19645 1 19042000 + 9398 24542 6507 6638 10759;10760;10761 10759 0.0676931613954821 EPMDIRSAY 9 Unmodified _EPMDIRSAY_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2548828125 2 541.252774 1080.491 0.27644 0.00014962 -0.92281 -0.00049947 -0.64637 -0.00034985 541.2520346199813 38.119 0.31886 38.119 37.846 38.165 0 37 15 3 0 0 0 0.2324 1 20261 20261 20.415 6.5085 1 3390300 9399 3522 6508 6639 10762 10762 -0.0460308405079104 EPMDIRSAY 9 Oxidation (M) _EPM(Oxidation (M))DIRSAY_ EPM(1)DIRSAY EPM(69)DIRSAY 0 0 1 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MSMS AL20221201_MKP_PDAC_01 4 549.2508544921875 2 549.250231 1096.48591 NaN NaN NaN NaN NaN NaN NaN 31.225 1 27.529 27.029 28.029 -3.6958 0 0 0 0.027645 1 17667 17667 69.105 38.468 1 9400 3522 6508 6640 10763 10763 625 -0.05847387913399871 EPMDTSEAAAT 11 Unmodified _EPMDTSEAAAT_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8272399902344 3 374.825499 1121.45467 NaN NaN NaN NaN NaN NaN NaN 61.973 1 61.973 61.473 62.473 0 0 0 0 0.77961 1 34556 34556 7.0371 0 1 9401 8230 6509 6641 10764 10764 -0.10120005738167492 EPMDTSEAAAT 11 Unmodified _EPMDTSEAAAT_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8268127441406 3 374.825499 1121.45467 NaN NaN NaN NaN NaN NaN NaN 62.16 1 62.16 61.66 62.66 0 0 0 0 0.77961 1 34664 34664 7.0371 3.45 1 9402 8230 6509 6641 10765 10765 -0.10120005738167492 EPMDTSEAAAT 11 Unmodified _EPMDTSEAAAT_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8268432617188 3 374.825499 1121.45467 NaN NaN NaN NaN NaN NaN NaN 62.343 1 62.343 61.843 62.843 0 0 0 0 0.77961 1 34771 34771 7.0371 1.6344 1 9403 8230 6509 6641 10766 10766 -0.10120005738167492 EPMNTNEMF 9 Unmodified _EPMNTNEMF_ 0 0 0 REV__ENST00000570311.1_1_17:45126763-45127807:+|nuORF;REV__ENSG00000176809|ENST00000584306|LRRC37A3 REV__ENSG00000176809|ENST00000584306|LRRC37A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3095092773438 2 556.722992 1111.43143 0.48198 0.00026833 1.1406 0.00063497 1.6225 0.0009033 557.2251343188825 66.849 0.1855 66.366 66.273 66.459 -0.48323 17 8 3 0 0 0 0.20528 1 36484 36484 4.756 0 1 929890 + 9404 28969;22939 6510 6642 10767 10767 -0.11982723056485156 EPMSIDCGHSF 11 Carbamidomethyl (C),Oxidation (M) _EPM(Oxidation (M))SIDC(Carbamidomethyl (C))GHSF_ EPMSIDC(1)GHSF EPM(1)SIDCGHSF EPMSIDC(46)GHSF EPM(46)SIDCGHSF 0 1 1 ENSG00000167333|ENST00000300747|TRIM68;ENST00000532108.1_1_11:4623360-4626734:-|nuORF ENSG00000167333|ENST00000300747|TRIM68 ENSG00000167333|ENST00000300747|TRIM68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.2553100585938 2 648.255188 1294.49582 1.1425 0.00074064 -0.61435 -0.00039826 0.52816 0.00034238 648.2546963559972 37.248 0.22908 32.964 32.843 33.072 -4.2835 20 13 2 0 0 0 0.073964 1 21844 21844 45.7 30.451 1 4318000 9405 7601 6511 6643 10768 10768 734 1299 -0.1396456797033352 EPNFEPDQLY 10 Unmodified _EPNFEPDQLY_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2805786132812 2 626.280043 1250.54553 0.30129 0.00018869 0.13733 8.601E-05 0.43863 0.0002747 626.2801053075381 54.951 0.35869 54.951 54.79 55.149 0 45 15 4 0 0 0 0.24625 2 30487 30487;30590 30.637 15.798 1 8474500 + 9406 17004 6512 6644 10769;10770 10769 -0.0697179369838068 EPNFSQMHI 9 Unmodified _EPNFSQMHI_ 0 0 0 ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF ENST00000373045.10_1_1:38266560-38266674:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.7059936523438 3 368.171053 1101.49133 NaN NaN NaN NaN NaN NaN NaN 18.641 1 16.02 15.52 16.52 -2.6215 0 0 0 0.7243 1 9832 9832 5.2969 1.3525 1 9407 12397 6513 6645 10771 10771 -0.05535664330932377 EPNGLLLHY 9 Unmodified _EPNGLLLHY_ 0 0 0 nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2390747070312 2 528.279649 1054.54475 -0.43743 -0.00023108 0.65951 0.00034841 0.22208 0.00011732 528.2804301920447 55.555 0.225 55.555 55.367 55.592 0 16 9 3 0 0 0 0.15246 1 30813 30813 13.508 0 1 1709500 9408 5896 6514 6646 10772 10772 0.019654564432585175 EPNLSQIIEY 10 Unmodified _EPNLSQIIEY_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.30615234375 2 603.306061 1204.59757 -0.040754 -2.4587E-05 0.0047676 2.8763E-06 -0.035986 -2.1711E-05 603.3056867594836 66.06 0.17672 66.06 65.959 66.135 0 13 8 2 0 0 0 0.67459 1 36826 36826 5.7319 0.43497 1 716690 + 9409 20059 6515 6647 10773 10773 0.003453697154100155 EPNNFISTY 9 Unmodified _EPNNFISTY_ 0 0 0 nc|ENSG00000124787|O75818-2|RPP40;ENSG00000124787|ENST00000380051|RPP40 nc|ENSG00000124787|O75818-2|RPP40 nc|ENSG00000124787|O75818-2|RPP40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.748779296875 2 542.750921 1083.48729 NaN NaN NaN NaN NaN NaN NaN 51.848 1 51.848 51.348 52.348 0 0 0 0 0.14 1 28664 28664 37.974 16.227 1 9410 3818 6516 6648 10774 10774 -0.051114305530063575 EPNNLREEF 9 Unmodified _EPNNLREEF_ 0 0 0 nc|ENSG00000095203|Q9H329-2|EPB41L4B;ENSG00000095203|ENST00000374566|EPB41L4B nc|ENSG00000095203|Q9H329-2|EPB41L4B nc|ENSG00000095203|Q9H329-2|EPB41L4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.270263671875 2 574.272552 1146.53055 0.90443 0.00051939 -1.2117 -0.00069585 -0.30729 -0.00017647 574.2716239173726 36.579 0.2592 36.579 36.43 36.69 0 25 12 3 0 0 0 0.024189 1 19405 19405 56.177 20.05 1 4196000 9411 1646 6517 6649 10775 10775 -0.03685240775712373 EPNPDDPLM 9 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ EPNPDDPLM(1) EPNPDDPLM(83) 0 0 1 ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T ENST00000487227.5_1_1:202302298-202304891:-|nuORF ENST00000487227.5_1_1:202302298-202304891:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2216186523438 2 522.221139 1042.42773 0.84089 0.00043913 -0.62729 -0.00032759 0.2136 0.00011154 522.2209303294647 36.617 0.81105 36.617 36.369 37.18 0 138 39 5 0 0 0 0.0094097 2 19569 19357;19569 82.529 63.09 1 59296000 9412 1207 6518 6650 10776;10777 10777 203 -0.09179069558695119 EPNPDDPLM 9 Oxidation (M) _EPNPDDPLM(Oxidation (M))_ EPNPDDPLM(1) EPNPDDPLM(75) 0 0 1 ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T ENST00000487227.5_1_1:202302298-202304891:-|nuORF ENST00000487227.5_1_1:202302298-202304891:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.22119140625 2 522.221139 1042.42773 0.71399 0.00037286 -0.38192 -0.00019945 0.33207 0.00017341 522.221126262601 43.878 0.85882 39.113 38.539 39.398 -4.7648 165 55 4 0 0 0 0.011968 2 26383 26383;26516 74.929 42.624 1 105020000 9413 1207 6518 6650 10778;10779 10778 203 -0.09179069558695119 EPNPDDPLM 9 Unmodified _EPNPDDPLM_ 0 0 0 ENST00000487227.5_1_1:202302298-202304891:-|nuORF;ENSG00000077152|ENST00000646651|UBE2T ENST00000487227.5_1_1:202302298-202304891:-|nuORF ENST00000487227.5_1_1:202302298-202304891:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 514.2239379882812 2 514.223682 1026.43281 NaN NaN NaN NaN NaN NaN NaN 55.032 1 49.111 48.611 49.611 -5.9211 0 0 0 0.091025 1 34980 34980 45.7 23.953 1 9414 1207 6518 6651 10780 10780 -0.0793476569606355 EPNPESLEL 9 Unmodified _EPNPESLEL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2511596679688 2 514.250754 1026.48696 0.33982 0.00017475 -0.50492 -0.00025966 -0.16511 -8.4907E-05 514.2507192163837 56.87 0.59209 56.87 56.609 57.201 0 78 25 5 0 0 0 0.010611 2 31678 31574;31678 78.728 30.267 1 32749000 9415 1860 6519 6652 10781;10782 10782 -0.025228502728623425 EPNPESLEL 9 Unmodified _EPNPESLEL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2509765625 2 514.250754 1026.48696 0.89714 0.00046136 -0.36821 -0.00018935 0.52894 0.00027201 514.2508271110298 64.844 0.43156 58.668 58.509 58.941 -6.1757 62 23 3 0 0 0 0.011671 2 42104 41976;42104 75.761 31.903 1 47243000 9416 1860 6519 6652 10783;10784 10784 -0.025228502728623425 EPNPHTKYQY 10 Unmodified _EPNPHTKYQY_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2034912109375 3 426.20341 1275.5884 -0.44765 -0.00019079 0.48643 0.00020732 0.038774 1.6526E-05 426.2036042005286 19.474 0.22757 19.474 19.357 19.585 0 77 25 4 0 0 0 0.51153 1 9714 9714 15.739 12.419 1 5032200 9417 901 6520 6653 10785 10785 -0.03836978850290507 EPNPHTKYQY 10 Unmodified _EPNPHTKYQY_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2030944824219 3 426.20341 1275.5884 1.3891 0.00059204 -1.2349 -0.00052632 0.15421 6.5725E-05 426.2028742630983 21.27 0.21566 18.577 18.489 18.704 -2.693 23 17 2 0 0 0 0.60478 1 11377 11377 10.899 3.7972 1 4726700 9418 901 6520 6653 10786 10786 -0.03836978850290507 EPNPPDVE 8 Unmodified _EPNPPDVE_ 0 0 0 REV__nc|ENSG00000236362|Q13070|GAGE6 REV__nc|ENSG00000236362|Q13070|GAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.3993530273438 1 896.399603 895.392327 0.15326 0.00013738 -0.36742 -0.00032935 -0.21415 -0.00019197 896.4000816032938 56.879 0.29372 56.879 56.728 57.022 0 21 12 2 0 0 0 0.50673 2 31585 31585;31695 34.102 0 1 1173600 + 9419 29959 6521 6654 10787;10788 10787 -0.059553640241801986 EPNSELSRDY 10 Unmodified _EPNSELSRDY_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.271728515625 2 605.272749 1208.53095 0.68532 0.00041481 -2.0702 -0.0012531 -1.3849 -0.00083826 605.2714185843197 42.602 0.16459 37.918 37.845 38.009 -4.6846 15 10 2 0 0 0 0.50362 1 25759 25759 16.149 2.2431 1 9346600 + 9420 27458 6522 6655 10789 10789 -0.06497865846495188 EPNSLLYNV 9 Unmodified _EPNSLLYNV_ 0 0 0 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7687377929688 2 524.769114 1047.52368 1.0539 0.00055303 1.7614 0.00092432 2.8153 0.0014774 524.7690138915192 51.292 0.39014 51.292 51.15 51.54 0 42 17 4 0 0 0 0.06294 1 28416 28416 41.84 1.8823 1 10189000 + 9421 21062 6523 6656 10790 10790 0.0018144634370855783 EPNSNVVKVAF 11 Unmodified _EPNSNVVKVAF_ 0 0 0 nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1;ENST00000469797.5_1_14:75137455-75152321:-|nuORF nc|ENSG00000119682|O15033-2|AREL1 nc|ENSG00000119682|O15033-2|AREL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.323486328125 2 602.322045 1202.62954 -0.001095 -6.5953E-07 0.43114 0.00025969 0.43005 0.00025903 602.3222022008463 50.534 0.23138 50.534 50.411 50.643 0 17 10 2 0 0 0 0.63851 1 27881 27881 9.3831 3.1773 1 1714100 9422 3453 6524 6657 10791 10791 0.036327821891973144 EPNSSHCSDRF 11 Unmodified _EPNSSHCSDRF_ 0 0 0 REV__ENST00000469852.5_1_20:61463352-61467329:+|nuORF REV__ENST00000469852.5_1_20:61463352-61467329:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.7601928710938 2 639.762026 1277.5095 NaN NaN NaN NaN NaN NaN NaN 89.835 1 89.333 88.833 89.833 -0.50171 0 0 0 0.94144 1 49111 49111 1.4819 0.68827 1 + 9423 27403 6525 6658 10792 10792 -0.11815574146908148 EPNSTKFVF 9 Unmodified _EPNSTKFVF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7715454101562 2 534.771657 1067.52876 -0.14314 -7.6548E-05 0.11941 6.3856E-05 -0.023734 -1.2692E-05 534.7715886019688 51.596 0.35625 51.163 50.968 51.325 -0.43367 53 18 4 0 0 0 0.19127 1 27877 27877 24.021 7.0783 1 35254000 9424 6242 6526 6659 10793 10793 -0.002302497936625514 EPNSTKFVF 9 Unmodified _EPNSTKFVF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7713012695312 2 534.771657 1067.52876 0.42911 0.00022948 -0.29518 -0.00015785 0.13393 7.1624E-05 534.77163053637 56.304 0.50007 50.327 50.081 50.581 -5.9769 51 28 2 0 0 0 0.28023 1 36010 36010 18.146 5.6148 1 176000000 9425 6242 6526 6659 10794 10794 -0.002302497936625514 EPNSYAISF 9 Unmodified _EPNSYAISF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000465571.2_1_20:39794900-39795514:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2402954101562 2 514.24019 1026.46583 0.18767 9.6506E-05 -0.22812 -0.00011731 -0.040456 -2.0804E-05 514.239963539292 61.673 0.5403 61.673 61.411 61.951 0 79 24 4 0 0 0 0.07916 1 34386 34386 37.974 9.4872 1 17493000 9426 3756 6527 6660 10795 10795 -0.04634815581721341 EPNSYAISF 9 Unmodified _EPNSYAISF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000465571.2_1_20:39794900-39795514:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2406005859375 2 514.24019 1026.46583 0.64524 0.00033181 0.90953 0.00046771 1.5548 0.00079952 514.2404797865884 62.178 0.42699 61.69 61.57 61.997 -0.48764 41 19 3 0 0 0 0.23158 1 33912 33912 20.454 4.6064 1 2487000 9427 3756 6527 6660 10796 10796 -0.04634815581721341 EPNSYAISF 9 Unmodified _EPNSYAISF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000465571.2_1_20:39794900-39795514:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2407836914062 2 514.24019 1026.46583 0.85306 0.00043868 0.43185 0.00022207 1.2849 0.00066075 514.2405152155113 69.245 0.45911 63.07 62.822 63.281 -6.1757 43 25 2 0 0 0 0.028475 1 45110 45110 56.177 23.872 1 42665000 9428 3756 6527 6660 10797 10797 -0.04634815581721341 EPNTIFYPK 9 Unmodified _EPNTIFYPK_ 0 0 0 REV__ENSG00000161048|ENST00000465647|NAPEPLD REV__ENSG00000161048|ENST00000465647|NAPEPLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7875366210938 2 554.787307 1107.56006 0.75473 0.00041872 -0.80241 -0.00044516 -0.047674 -2.6449E-05 554.7867384307777 82.947 0.38833 82.449 82.224 82.613 -0.49751 30 16 2 0 0 0 0.20428 1 45468 45468 22.736 8.8302 1 3508700 + 9429 21584 6528 6661 10798 10798 0.010583232404314913 EPPAIWVNCLA 11 Unmodified _EPPAIWVNCLA_ 0 0 0 ENST00000492955.1_1_2:160759503-160759584:-|nuORF ENST00000492955.1_1_2:160759503-160759584:-|nuORF ENST00000492955.1_1_2:160759503-160759584:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8108520507812 2 606.807716 1211.60088 1.8753 0.0011379 -0.26675 -0.00016187 1.6085 0.00097607 606.8079853035856 62.744 0.43699 56.569 56.322 56.759 -6.1757 55 21 3 0 0 0 0.56638 1 40449 40449 13.042 1.4022 1 47933000 9430 14302 6529 6662 10799 10799 0.00354341288402793 EPPEPPLQI 9 Unmodified _EPPEPPLQI_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A;ENST00000461701.5_1_11:64680365-64680938:-|nuORF nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2732849121094 2 510.274032 1018.53351 0.35687 0.0001821 -0.29871 -0.00015242 0.058157 2.9676E-05 510.2738357307638 64.053 0.25956 63.568 63.458 63.718 -0.48512 22 12 2 0 0 0 0.41742 1 34971 34971 11.64 0 1 1576500 9431 2693 6530 6663 10800 10800 0.02498634349092299 EPPGRRRGR 9 Unmodified _EPPGRRRGR_ 0 0 0 ENSG00000152990|ENST00000334304|ADGRA3;ADGRA3|p.K480Rfs*4|1|0.32|ENSG00000152990|chr4:22435314-22435315|TT/-|frameshift_variant;nc|ENSG00000152990|Q8IWK6-2|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 MSMS AL20221201_MKP_PDAC_01 4 360.8757629394531 3 360.875962 1079.60606 NaN NaN NaN NaN NaN NaN NaN 15.571 1 13.044 12.544 13.544 -2.5273 0 0 0 0.82396 1 8001 8001 2.7352 0 1 9432 6226 6531 6664 10801 10801 0.06943825985877083 EPPGSFSYAY 10 Unmodified _EPPGSFSYAY_ 0 0 0 REV__nc|ENSG00000100934|Q15436-2|SEC23A REV__nc|ENSG00000100934|Q15436-2|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2456665039062 2 559.245472 1116.47639 0.68247 0.00038167 0.68294 0.00038193 1.3654 0.0007636 559.2456624363507 45.871 0.31322 45.871 45.704 46.018 0 38 15 4 0 0 0 0.60623 1 24993 24993 10.824 0.75 1 33459000 + 9433 18118 6532 6665 10802 10802 -0.07718832927298536 EPPIFNEII 9 Unmodified _EPPIFNEII_ 0 0 0 REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2899169921875 2 536.289682 1070.56481 0.39617 0.00021246 1.8316 0.00098229 2.2278 0.0011947 536.2901051342412 87.204 0.67976 86.7 86.266 86.946 -0.50423 52 27 3 0 0 0 0.45045 1 47721 47721 10.074 2.7847 1 623040 + 9434 17739 6533 6666 10803 10803 0.0323520738318166 EPPIFNEII 9 Unmodified _EPPIFNEII_ 0 0 0 REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF REV__ENST00000488341.5_1_2:26174656-26179274:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.289682 1070.56481 0.27242 0.0001461 0.50623 0.00027149 0.77865 0.00041758 536.2899851188232 86.632 0.50517 86.632 86.358 86.863 0 -0.034169 -0.00079969 NaN 10.074 34 25 2 NaN NaN NaN NaN 0 NaN NaN 0 507630 + 9435 17739 6533 6666 0.0323520738318166 EPPLFIPDNI 10 Unmodified _EPPLFIPDNI_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5418395996094 3 385.541252 1153.60193 1.5565 0.0006001 0.16993 6.5516E-05 1.7264 0.00066562 385.54142300750453 20.664 0.50203 17.971 17.762 18.264 -2.693 86 30 4 0 0 0 0.67459 1 11042 11042 3.0723 0 1 30503000 9436 3374 6534 6667 10804 10804 0.03126878928969745 EPPLLHWRPF 10 Unmodified _EPPLLHWRPF_ 0 0 0 REV__ENST00000560419.1_1_14:75893609-75893885:-|nuORF REV__ENST00000560419.1_1_14:75893609-75893885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3497314453125 2 646.35094 1290.68733 0.11043 7.1374E-05 -0.35309 -0.00022822 -0.24267 -0.00015685 646.3507357774897 66.737 0.79379 66.253 65.88 66.674 -0.48323 125 37 4 0 0 0 0.6606 1 36666 36666 7.2892 0.56607 1 10328000 + 9437 28827 6535 6668 10805 10805 0.05361088905260658 EPPPAPRIVY 10 Unmodified _EPPPAPRIVY_ 0 0 0 REV__ENSG00000100335|ENST00000325301|MIEF1 REV__ENSG00000100335|ENST00000325301|MIEF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7827758789062 2 569.816399 1137.61824 0.78611 0.00044794 -3.756 -0.0021402 -2.9699 -0.0016923 569.8143855393602 63.58 0.34923 63.57 63.413 63.762 -0.010532 20 16 2 0 0 0 0.22769 1 34827 34827 16.149 2.2431 1 4032200 + 9438 18045 6536 6669 10806 10806 0.05494004885713366 EPPPVSTVVHF 11 Unmodified _EPPPVSTVVHF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.8195190429688 2 604.819138 1207.62372 -0.092055 -5.5677E-05 -0.063657 -3.8501E-05 -0.15571 -9.4178E-05 604.8193586088069 61.455 0.3447 61.455 61.275 61.62 0 37 15 3 0 0 0 0.0069872 2 34238 34238;34347 71.922 42.082 1 5988400 9439 4799 6537 6670 10807;10808 10807 0.02821683677530018 EPPPVSTVVHF 11 Unmodified _EPPPVSTVVHF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8192749023438 2 604.819138 1207.62372 0.48411 0.0002928 -0.94214 -0.00056983 -0.45803 -0.00027703 604.8184683391191 62.013 0.42121 61.526 61.305 61.726 -0.48764 58 19 4 0 0 0 0.0069872 2 33715 33715;33813 71.922 48.132 1 16639000 9440 4799 6537 6670 10809;10810 10809 0.02821683677530018 EPPPVSTVVHF 11 Unmodified _EPPPVSTVVHF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8214111328125 2 604.819138 1207.62372 0.27368 0.00016553 1.8302 0.0011069 2.1039 0.0012725 604.8205255848206 67.429 0.42763 61.253 61.071 61.499 -6.1757 61 23 3 0 0 0 0.00047726 1 43981 43981 88.954 61.731 1 52390000 9441 4799 6537 6670 10811 10811 0.02821683677530018 EPPRDRKRQRD 11 Unmodified _EPPRDRKRQRD_ 0 0 0 REV__ENST00000373034.8_1_X:99664827-99665028:-|nuORF REV__ENST00000373034.8_1_X:99664827-99665028:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.9321594238281 3 484.930795 1451.77056 NaN NaN NaN NaN NaN NaN NaN 11.94 1 9.4582 8.9582 9.9582 -2.482 0 0 0 0.94165 1 6014 6014 0.45452 0 1 + 9442 26134 6538 6671 10812 10812 0.06274173615156542 EPPRLIYFK 9 Unmodified _EPPRLIYFK_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.8617858886719 3 388.225486 1161.65463 1.5808 0.0006137 -1.6114 -0.00062557 -0.030581 -1.1872E-05 388.22470541326885 37.213 0.19601 32.93 32.827 33.023 -4.2835 19 11 2 0 0 0 0.2188 1 21803 21803 1.0715 0 1 6288300 9443 10141 6539 6672 10813 10813 0.08026881782393502 EPPRYLLKF 9 Unmodified _EPPRYLLKF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8600158691406 3 388.225486 1161.65463 -0.23453 -9.1049E-05 -0.12704 -4.9321E-05 -0.36157 -0.00014037 388.2252913507425 33.061 0.15047 32.902 32.833 32.984 -0.15918 10 5 2 0 0 0 0.21806 1 17206 17206 2.7352 1.5419 1 2055800 9444 681 6540 6673 10814 10814 0.0802688178241624 EPPSAPEAPG 10 Unmodified _EPPSAPEAPG_ 0 0 0 REV__ENSG00000135413|ENST00000257867|LACRT REV__ENSG00000135413|ENST00000257867|LACRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.441650390625 1 951.441802 950.434526 -0.30244 -0.00028776 -0.062259 -5.9235E-05 -0.3647 -0.00034699 951.4416837224425 58.801 0.248 58.801 58.654 58.902 0 20 10 2 0 0 0 0.39779 1 32800 32800 21.747 0 1 2802000 + 9445 20063 6541 6674 10815 10815 -0.04267388615812706 EPQDWPQQY 9 Unmodified _EPQDWPQQY_ 0 0 0 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7603759765625 2 595.759278 1189.504 0.070614 4.2069E-05 1.3164 0.00078423 1.387 0.0008263 595.7602775856524 63.698 0.23642 63.698 63.543 63.779 0 13 9 2 0 0 0 0.54444 1 35548 35548 4.756 0 1 686390 9446 10204 6542 6675 10816 10816 -0.08316929667034856 EPQGLEIPCL 10 Unmodified _EPQGLEIPCL_ 0 0 0 ENST00000371471.6_1_20:52199656-52210357:-|nuORF ENST00000371471.6_1_20:52199656-52210357:-|nuORF ENST00000371471.6_1_20:52199656-52210357:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7772216796875 2 549.778625 1097.5427 0.43094 0.00023692 -0.87317 -0.00048005 -0.44223 -0.00024313 549.7781856773164 90.837 0.32007 90.343 90.208 90.528 -0.49458 47 25 2 0 0 0 0.46514 1 49628 49628 18.146 0.011366 1 2633600 9447 12360 6543 6676 10817 10817 -0.0021734035690315068 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.5486755371094 3 385.548741 1153.62439 0.49325 0.00019017 0.081993 3.1612E-05 0.57524 0.00022178 385.5487617911133 36.679 0.27053 36.679 36.547 36.818 0 39 12 4 0 0 0 0.2546 1 19450 19450 19.362 9.2114 1 13391000 9448 293 6544 6677 10818 10818 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.8197631835938 2 577.819473 1153.62439 0.75804 0.00043801 -0.95744 -0.00055323 -0.1994 -0.00011522 577.8194910532429 36.679 0.18719 36.679 36.588 36.775 0 20 8 3 0 0 0 0.08691 1 19483 19483 36.127 21.289 1 2997900 9449 293 6544 6677 10819 10819 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5485534667969 3 385.548741 1153.62439 -0.30065 -0.00011591 0.79396 0.00030611 0.49331 0.0001902 385.548951045142 36.908 0.31201 36.659 36.531 36.843 -0.2497 50 13 5 0 0 0 0.085319 2 19356 19356;19454 36.506 16.092 1 36312000 9450 293 6544 6677 10820;10821 10820 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8199462890625 2 577.819473 1153.62439 -0.23864 -0.00013789 0.70641 0.00040817 0.46777 0.00027028 577.8200087698505 36.922 0.24237 36.672 36.554 36.796 -0.2497 27 10 3 0 0 0 0.021948 1 19370 19370 68.081 37.444 1 7183400 9451 293 6544 6677 10822 10822 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5484924316406 3 385.548741 1153.62439 -0.31112 -0.00011995 0.46844 0.00018061 0.15732 6.0654E-05 385.54872528362034 36.613 0.14692 36.634 36.559 36.706 0.021545 11 6 3 0 0 0 0.44883 1 19399 19399 10.151 5.6217 1 2116700 9452 293 6544 6677 10823 10823 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5493469238281 3 385.548741 1153.62439 1.2027 0.0004637 0.38273 0.00014756 1.5854 0.00061127 385.54888798755206 40.598 0.53254 36.068 35.824 36.356 -4.5294 110 32 4 0 0 0 0.19361 2 24284 24162;24284 23.79 15.634 1 109130000 9453 293 6544 6677 10824;10825 10825 0.05372523117216588 EPQHVLLRY 9 Unmodified _EPQHVLLRY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8204956054688 2 577.819473 1153.62439 0.82859 0.00047878 0.56909 0.00032883 1.3977 0.00080761 577.8195961325522 40.607 0.4346 36.077 35.84 36.275 -4.5294 68 26 3 0 0 0 0.0081 2 24308 24180;24308 103.35 72.717 1 38838000 9454 293 6544 6677 10826;10827 10827 0.05372523117216588 EPQHWPVQY 9 Unmodified _EPQHWPVQY_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2799682617188 2 592.28018 1182.54581 0.72564 0.00042978 -0.87545 -0.00051851 -0.14981 -8.8728E-05 592.2795837784711 46.287 0.392 46.287 46.044 46.436 0 31 18 2 0 0 0 0.06294 2 25341 25228;25341 41.84 21.386 1 9834900 9455 8678 6545 6678 10828;10829 10829 -0.03816329187861811 EPQHWPVQY 9 Unmodified _EPQHWPVQY_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2794799804688 2 592.28018 1182.54581 0.62096 0.00036778 -0.31552 -0.00018688 0.30544 0.00018091 592.2801738815301 46.63 0.45039 46.293 46.053 46.503 -0.33664 51 22 3 0 0 0 0.06294 2 24900 24900;25004 41.84 14.956 1 12733000 9456 8678 6545 6678 10830;10831 10830 -0.03816329187861811 EPQRAAVV 8 Unmodified _EPQRAAVV_ 0 0 0 nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.486572265625 1 869.483942 868.476666 0.56821 0.00049405 -0.90316 -0.00078528 -0.33494 -0.00029123 869.4832458444099 43.302 0.38963 38.537 38.304 38.693 -4.7648 45 27 2 0 0 0 0.58902 1 26173 26173 26.884 5.137 1 20109000 9457 6662 6546 6679 10832 10832 0.037166315832337204 EPQVATIYL 9 Unmodified _EPQVATIYL_ 0 0 0 REV__nc|ENSG00000211781|A0A075B6U4|TRAV7 REV__nc|ENSG00000211781|A0A075B6U4|TRAV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2816772460938 2 517.281857 1032.54916 -0.012316 -6.3709E-06 0.10098 5.2236E-05 0.088665 4.5865E-05 517.2818065240521 66 0.28201 65.516 65.385 65.667 -0.48394 20 12 2 0 0 0 0.41742 1 36103 36103 11.64 0.81637 1 3680200 + 9458 29929 6547 6680 10833 10833 0.034189208661246084 EPRAWPLHL 9 Unmodified _EPRAWPLHL_ 0 0 0 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2876586914062 2 559.808908 1117.60326 0.7289 0.00040804 1.5901 0.00089017 2.319 0.0012982 559.8097992066251 45.869 0.32305 45.869 45.745 46.068 0 23 15 3 0 0 0 0.21564 1 25052 25052 3.9444 1.3669 1 8513400 9459 6775 6548 6681 10834 10834 0.04916557808383004 EPRFVLRAL 9 Unmodified _EPRFVLRAL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5574340820312 3 367.557348 1099.65021 0.14156 5.2032E-05 0.77564 0.00028509 0.9172 0.00033712 367.557510533362 54.576 0.3045 54.51 54.359 54.663 -0.066936 26 14 2 0 0 0 0.21643 1 29703 29703 21.537 10.713 1 9546300 9460 2559 6549 6682 10835 10835 0.10437417359503343 EPRGERNIAF 10 Unmodified _EPRGERNIAF_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8751831054688 3 396.875516 1187.60472 -0.36671 -0.00014554 0.78991 0.0003135 0.4232 0.00016796 396.8757994862745 29.317 0.32808 29.317 29.142 29.47 0 45 15 4 0 0 0 0.20962 1 15140 15140 28.234 14.015 1 6356000 9461 10906 6550 6683 10836 10836 0.018421471064584694 EPRGERNIAF 10 Unmodified _EPRGERNIAF_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.87646484375 3 396.875516 1187.60472 1.0676 0.00042372 -0.93989 -0.00037302 0.12775 5.0702E-05 396.8751300651405 32.115 0.43707 28.419 28.156 28.593 -3.6958 28 24 2 0 0 0 0.095786 1 18232 18232 35.08 15.454 1 21060000 9462 10906 6550 6683 10837 10837 0.018421471064584694 EPRLLRLRYRL 11 Unmodified _EPRLLRLRYRL_ 0 0 0 REV__ENST00000554717.1_1_14:64108067-64108556:-|nuORF REV__ENST00000554717.1_1_14:64108067-64108556:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 742.9629516601562 2 742.962252 1483.90995 NaN NaN NaN NaN NaN NaN NaN 97.248 1 97.248 96.748 97.748 0 0 0 0 0.94307 1 53736 53736 0.30703 0.30703 1 + 9463 28757 6551 6684 10838 10838 0.18735162970483543 EPRLWQRCLE 10 Unmodified _EPRLWQRCLE_ 0 0 0 REV__ZSCAN16|p.C266*|1|0.85|ENSG00000196812|chr6:28129698-28129702|ATGTG/-|frameshift_variant REV__ZSCAN16|p.C266*|1|0.85|ENSG00000196812|chr6:28129698-28129702|ATGTG/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.3412475585938 2 665.340246 1328.66594 NaN NaN NaN NaN NaN NaN NaN 90.953 1 90.458 89.958 90.958 -0.49457 0 0 0 0.97302 1 49722 49722 3.5965 0.60125 1 + 9464 17973 6552 6685 10839 10839 0.014753358142570505 EPRNRHSP 8 Unmodified _EPRNRHSP_ 0 0 0 ENSG00000176771|ENST00000409261|NCKAP5 ENSG00000176771|ENST00000409261|NCKAP5 ENSG00000176771|ENST00000409261|NCKAP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7558898925781 2 496.754664 991.494775 NaN NaN NaN NaN NaN NaN NaN 21.066 1 21.066 20.566 21.566 0 0 0 0 0.97444 1 10635 10635 2.3027 0.4585 1 9465 8621 6553 6686 10840 10840 -0.0013123344205041576 EPRPFDPQY 9 Unmodified _EPRPFDPQY_ 0 0 0 ENSG00000166477|ENST00000299601|LEO1 ENSG00000166477|ENST00000299601|LEO1 ENSG00000166477|ENST00000299601|LEO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7725830078125 2 574.772188 1147.52982 0.56495 0.00032472 -0.40516 -0.00023287 0.15979 9.1845E-05 574.7719323671043 45.014 0.50969 40.162 39.905 40.414 -4.852 72 33 3 0 0 0 0.040683 2 27553 27553;27705 49.554 14.622 1 32011000 9466 7494 6554 6687 10841;10842 10841 -0.03804035424764152 EPRPGAGSL 9 Unmodified _EPRPGAGSL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.235595703125 2 442.235242 882.45593 0.67295 0.0002976 1.6002 0.00070767 2.2732 0.0010053 442.2358585424117 26.637 0.29905 23.686 23.542 23.841 -2.9511 31 15 3 0 0 0 0.029718 1 14690 14690 55.503 9.4818 1 5226600 9467 5293;16515;15470 6555 6688 10843 10843 0.010000412035765294 EPRPGGYPVY 10 Unmodified _EPRPGGYPVY_ 0 0 0 REV__ENSG00000118094|ENST00000264029|TREH REV__ENSG00000118094|ENST00000264029|TREH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7827758789062 2 567.782556 1133.55056 0.26165 0.00014856 -2.5761 -0.0014627 -2.3144 -0.0013141 567.780562019489 40.024 0.33885 40.024 39.853 40.192 0 40 16 3 0 0 0 0.18021 1 21441 21441 36.127 13.391 1 10881000 + 9468 19134 6556 6689 10844 10844 -0.01087445045095592 EPRPGGYPVY 10 Unmodified _EPRPGGYPVY_ 0 0 0 REV__ENSG00000118094|ENST00000264029|TREH REV__ENSG00000118094|ENST00000264029|TREH MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7844848632812 2 567.782556 1133.55056 0.5689 0.00032301 0.045423 2.579E-05 0.61432 0.0003488 567.782810653565 45.397 0.32995 40.442 40.311 40.641 -4.9549 50 22 3 0 0 0 0.095098 2 27949 27809;27949 47.749 18.667 1 30130000 + 9469 19134 6556 6689 10845;10846 10846 -0.01087445045095592 EPRPGGYPVY 10 Unmodified _EPRPGGYPVY_ 0 0 0 REV__ENSG00000118094|ENST00000264029|TREH REV__ENSG00000118094|ENST00000264029|TREH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 567.782556 1133.55056 0.65468 0.00037172 -0.23373 -0.00013271 0.42096 0.00023901 567.7828002630566 40.373 0.25678 40.076 39.942 40.199 -0.29716 -0.10485 6.1048E-05 NaN 47.749 28 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6227400 + 9470 19134 6556 6689 -0.01087445045095592 EPRPGGYPVY 10 Unmodified _EPRPGGYPVY_ 0 0 0 REV__ENSG00000118094|ENST00000264029|TREH REV__ENSG00000118094|ENST00000264029|TREH MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 567.782556 1133.55056 0.5689 0.00032301 0.045423 2.579E-05 0.61432 0.0003488 567.782810653565 45.397 0.32995 40.442 40.311 40.641 -4.9549 0.26125 0.00037804 NaN 47.749 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 30130000 + 9471 19134 6556 6689 -0.01087445045095592 EPRPPHGELQY 11 Unmodified _EPRPPHGELQY_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.5546875 3 441.554443 1321.6415 -0.31871 -0.00014073 1.2626 0.00055749 0.94386 0.00041676 441.55483240281444 28.807 0.42253 28.807 28.6 29.022 0 39 20 4 0 0 0 0.631 1 14914 14914 9.7643 1.3199 1 2058700 9472 8629 6557 6690 10847 10847 -0.006456010676174628 EPRPPHGELQY 11 Unmodified _EPRPPHGELQY_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MSMS AL20221201_MKP_PDAC_01 4 441.553955078125 3 441.554443 1321.6415 NaN NaN NaN NaN NaN NaN NaN 32.359 1 28.503 28.003 29.003 -3.8562 0 0 0 0.48959 1 18434 18434 24.957 12.101 1 9473 8629 6557 6690 10848 10848 -0.006456010676174628 EPRQRERF 8 Unmodified _EPRQRERF_ 0 0 0 ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENST00000469080.5_1_X:47092634-47106681:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2977294921875 2 559.296696 1116.57884 NaN NaN NaN NaN NaN NaN NaN 69.029 1 69.029 68.529 69.529 0 0 0 0 0.97444 1 38465 38465 2.5775 0 1 9474 13824 6558 6691 10849 10849 0.025212976548345978 EPRRLWHCVVR 11 Unmodified _EPRRLWHCVVR_ 0 0 0 ENST00000522965.1_1_8:90770176-90802641:+|nuORF ENST00000522965.1_1_8:90770176-90802641:+|nuORF ENST00000522965.1_1_8:90770176-90802641:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.6001281738281 3 484.266462 1449.77756 0.70786 0.00034279 -0.25964 -0.00012573 0.44822 0.00021706 484.2666397119773 18.284 0.56591 15.663 15.372 15.938 -2.6215 113 49 3 0 0 0 0.67477 1 9710 9710 6.6235 0.3891 1 8030000 9475 14761 6559 6692 10850 10850 0.0706581496203853 EPRSESECL 9 Unmodified _EPRSESECL_ 0 0 0 nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7;ENST00000491775.5_1_13:111806017-111861644:+|nuORF nc|ENSG00000102606|Q14155-5|ARHGEF7 nc|ENSG00000102606|Q14155-5|ARHGEF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.73486328125 2 525.232039 1048.44952 0.41577 0.00021837 1.2275 0.0006447 1.6432 0.00086307 525.2323361278267 61.66 0.52911 61.66 61.514 62.044 0 53 23 3 0 0 0 0.32871 1 34452 34452 15.847 4.2069 1 3236900 9476 2057 6560 6693 10851 10851 -0.07276264810116118 EPRSRKLRSV 10 Unmodified _EPRSRKLRSV_ 0 0 0 ENST00000335154.9_1_12:50100981-50101167:-|nuORF ENST00000335154.9_1_12:50100981-50101167:-|nuORF ENST00000335154.9_1_12:50100981-50101167:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.6634216308594 3 409.914194 1226.72075 NaN NaN NaN NaN NaN NaN NaN 70.786 1 70.309 69.809 70.809 -0.47735 0 0 0 0.9997 1 38731 38731 0.69767 0 1 9477 11895 6561 6694 10852 10852 0.11646090677163556 EPRYILPSPS 10 Unmodified _EPRYILPSPS_ 0 0 0 REV__ENSG00000255833|ENST00000537858|TIFAB REV__ENSG00000255833|ENST00000537858|TIFAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8765258789062 3 386.876634 1157.60807 0.32503 0.00012575 0.99952 0.00038669 1.3245 0.00051244 386.87683190983245 36.921 0.59274 36.921 36.566 37.159 0 69 28 3 0 0 0 0.54083 1 19629 19629 14.218 2.7003 1 3369000 + 9478 24544 6562 6695 10853 10853 0.035573971604890176 EPSAVALEL 9 Unmodified _EPSAVALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4978637695312 1 928.498589 927.491313 0.53218 0.00049412 -0.051215 -4.7553E-05 0.48096 0.00044657 928.498248377141 66.505 0.44046 66.505 66.26 66.701 0 46 19 3 0 0 0 0.012148 1 37114 37114 74.423 13.065 1 5659000 9479 6628;16309;16310 6563 6696 10854 10854 0.02466658940693378 EPSAVALEL 9 Unmodified _EPSAVALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4993286132812 1 928.498589 927.491313 0.67734 0.00062891 0.17793 0.0001652 0.85527 0.00079411 928.4987549108417 73.912 0.32384 73.912 73.738 74.062 0 21 13 2 0 0 0 0.32871 1 41109 41109 15.847 1.0089 1 830360 9480 6628;16309;16310 6563 6696 10855 10855 0.02466658940693378 EPSAVALEL 9 Unmodified _EPSAVALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4995727539062 1 928.498589 927.491313 0.88819 0.00082468 -1.4571 -0.001353 -0.56896 -0.00052828 928.4976472913401 72.707 0.076164 66.532 66.486 66.562 -6.1757 5 3 2 0 0 0 0.042911 1 47568 47568 48.346 3.9388 1 10711000 9481 6628;16309;16310 6563 6696 10856 10856 0.02466658940693378 EPSAVPTDY 9 Unmodified _EPSAVPTDY_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7240905761719 2 489.724372 977.434192 NaN NaN NaN NaN NaN NaN NaN 37.415 1 37.415 36.915 37.915 0 0 0 0 0.10545 1 19901 19901 42.095 13.608 1 9482 6628;16309 6564 6697 10857 10857 -0.05542808335678728 EPSDPSQCD 9 Unmodified _EPSDPSQCD_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7377624511719 2 489.179472 976.34439 0.34807 0.00017027 2.813 0.001376 3.161 0.0015463 489.18111122219545 58.138 0.27982 58.138 58.036 58.316 0 15 10 2 0 0 0 0.20727 1 32466 32466 7.9102 5.0209 1 605740 9483 6407 6565 6698 10858 10858 -0.14472806006540395 EPSDVVNSL 9 Unmodified _EPSDVVNSL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2377014160156 2 480.237647 958.460741 0.58128 0.00027915 1.3603 0.00065328 1.9416 0.00093243 480.23800815122166 46.549 0.306 46.549 46.412 46.718 0 28 13 3 0 0 0 0.070838 1 25430 25430 39.957 18.211 1 3273900 9484 7155 6566 6699 10859 10859 -0.020151194443315035 EPSEQIVTY 9 Unmodified _EPSEQIVTY_ 0 0 0 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7574462890625 2 533.258579 1064.50261 0.21843 0.00011648 -1.6625 -0.00088653 -1.444 -0.00077005 533.7587705465813 62.225 0.54354 62.225 61.821 62.365 0 59 26 3 0 0 0 0.39863 1 34748 34748 12.532 1.7076 1 7905900 + 9485 23346 6567 6700 10860 10860 -0.02706563755782554 EPSFAAGQGI 10 Unmodified _EPSFAAGQGI_ 0 0 0 REV__nc|ENSG00000188013|A8K0S8|MEIS3P2 REV__nc|ENSG00000188013|A8K0S8|MEIS3P2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2173767089844 2 488.740357 975.46616 0.59339 0.00029001 3.1654 0.0015471 3.7588 0.0018371 488.74162695630264 49.49 0.42085 49.49 49.333 49.754 0 27 18 2 0 0 0 0.22811 1 27313 27313 14.838 6.245 1 1655400 + 9486 29860 6568 6701 10861 10861 -0.022553958618573233 EPSFITESY 9 Unmodified _EPSFITESY_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7456665039062 2 536.745305 1071.47606 0.32924 0.00017672 -0.22313 -0.00011976 0.10611 5.6952E-05 536.7452261859892 56.79 0.72641 56.79 56.495 57.221 0 100 31 4 0 0 0 0.06187 3 31485 31485;31599;31707 42.095 15.955 1 64276000 9487 4656 6569 6702 10862;10863;10864 10862 -0.05682252647147834 EPSFITESY 9 Unmodified _EPSFITESY_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1073.91748046875 1 1072.48333 1071.47606 0.61995 0.00066489 1.239 0.0013288 1.8589 0.0019937 1072.484693734624 65.011 0.39188 58.835 58.644 59.036 -6.1757 36 21 2 0 0 0 0.011968 1 42087 42087 74.929 33.089 1 16062000 9488 4656 6569 6702 10865 10865 -0.05682252647147834 EPSFITESY 9 Unmodified _EPSFITESY_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MSMS AL20221201_MKP_PDAC_01 4 536.7459716796875 2 536.745305 1071.47606 NaN NaN NaN NaN NaN NaN NaN 64.877 1 58.702 58.202 59.202 -6.1757 0 0 0 0.33856 1 42071 42071 23.148 6.2061 1 9489 4656 6569 6702 10866 10866 -0.05682252647147834 EPSFITESY 9 Unmodified _EPSFITESY_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.745305 1071.47606 0.38632 0.00020736 -0.91049 -0.0004887 -0.52417 -0.00028134 536.7459448368547 57.459 0.20805 56.969 56.816 57.024 -0.48974 0.089464 -0.00071796 NaN 42.095 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1902400 9490 4656 6569 6702 -0.05682252647147834 EPSFIVVHY 9 Unmodified _EPSFIVVHY_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7814331054688 2 545.782025 1089.5495 0.20415 0.00011142 0.37144 0.00020273 0.57559 0.00031415 545.7826754672166 61.703 0.30169 61.703 61.497 61.798 0 29 13 3 0 0 0 0.095049 1 34353 34353 34.187 24.84 1 5107500 9491 10932 6570 6703 10867 10867 0.008303405860033308 EPSFIVVHY 9 Unmodified _EPSFIVVHY_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7822265625 2 545.782025 1089.5495 0.53063 0.00028961 0.4406 0.00024047 0.97124 0.00053008 545.7824911935941 62.208 0.3212 61.72 61.529 61.851 -0.48764 37 14 3 0 0 0 0.16776 2 33854 33854;33960 26.341 16.158 1 12092000 9492 10932 6570 6703 10868;10869 10868 0.008303405860033308 EPSGIIEAI 9 Unmodified _EPSGIIEAI_ 0 0 0 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7537231445312 2 464.752933 927.491313 0.91221 0.00042395 1.0309 0.0004791 1.9431 0.00090305 464.7530257654704 73.906 0.30655 73.906 73.738 74.045 0 30 12 3 0 0 0 0.2143 1 41122 41122 21.747 0 1 1420300 9493 8066 6571 6704 10870 10870 0.024666589407161155 EPSGIIEAI 9 Unmodified _EPSGIIEAI_ 0 0 0 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.5018310546875 1 928.498589 927.491313 0.67734 0.00062891 0.17793 0.0001652 0.85527 0.00079411 928.4987549108417 73.912 0.32384 73.912 73.738 74.062 0 21 13 2 0 0 0 0.55775 1 41209 41209 3.9444 0 1 830360 9494 8066 6571 6704 10871 10871 0.024666589407161155 EPSHLNRN 8 Unmodified _EPSHLNRN_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7424011230469 2 483.741222 965.467892 NaN NaN NaN NaN NaN NaN NaN 74.411 1 74.411 73.911 74.911 0 0 0 0 0.97444 1 41406 41406 5.2307 0 1 + 9495 18902 6572 6705 10872 10872 -0.016223420532355703 EPSIAEYTV 9 Unmodified _EPSIAEYTV_ 0 0 0 ENSG00000102580|ENST00000602402|DNAJC3 ENSG00000102580|ENST00000602402|DNAJC3 ENSG00000102580|ENST00000602402|DNAJC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7401733398438 2 504.747847 1007.48114 1.2282 0.00061994 -4.0706 -0.0020546 -2.8424 -0.0014347 504.7458047875041 64.628 0.3996 58.453 58.315 58.715 -6.1757 35 22 2 0 0 0 0.07916 1 41821 41821 37.974 0 1 11340000 9496 2055 6573 6706 10873 10873 -0.02229948784508906 EPSIQTYGSE 10 Unmodified _EPSIQTYGSE_ 0 0 0 REV__ENSG00000083168|ENST00000265713|KAT6A REV__ENSG00000083168|ENST00000265713|KAT6A MSMS AL20221201_MKP_PDAC_01 4 555.748779296875 2 555.751118 1109.48768 NaN NaN NaN NaN NaN NaN NaN 21.149 1 18.456 17.956 18.956 -2.693 0 0 0 0.8671 1 11298 11298 9.3831 3.1773 1 + 9497 17714 6574 6707 10874 10874 -0.06268055623809232 EPSLSLKATY 10 Unmodified _EPSLSLKATY_ 0 0 0 REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.888671875 2 554.797872 1107.58119 1.0031 0.00055653 -0.87637 -0.00048621 0.12674 7.0317E-05 554.7971275603713 51.352 0.22118 51.352 51.254 51.475 0 16 9 2 0 0 0 0.22667 1 28307 28307 15.847 5.7733 1 1486700 + 9498 27652 6575 6708 10875 10875 0.031702885492677524 EPSNLVFVSF 10 Unmodified _EPSNLVFVSF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2940063476562 2 569.792589 1137.57063 0.6098 0.00034746 0.15539 8.8537E-05 0.76518 0.000436 569.7925108087891 89.789 0.43231 89.288 89.102 89.534 -0.50172 49 21 3 0 0 0 0.56348 1 49135 49135 13.042 6.3193 1 1949600 9499 4951 6576 6709 10876 10876 0.0073430589486633835 EPSNLVFVSF 10 Unmodified _EPSNLVFVSF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.792589 1137.57063 0.36177 0.00020613 -0.39091 -0.00022274 -0.029138 -1.6603E-05 569.7925020975881 89.28 0.2424 89.327 89.24 89.482 0.047852 0.019966 -0.00059619 NaN 13.042 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5268600 9500 4951 6576 6709 0.0073430589486633835 EPSNSIFP 8 Unmodified _EPSNSIFP_ 0 0 0 ENSG00000113805|ENST00000263665|CNTN3 ENSG00000113805|ENST00000263665|CNTN3 ENSG00000113805|ENST00000263665|CNTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 890.4241943359375 1 890.425424 889.418148 -0.30224 -0.00026912 1.0135 0.00090243 0.71124 0.00063331 890.4256197196362 51.954 0.23683 51.954 51.842 52.079 0 25 10 3 0 0 0 0.38465 1 28694 28694 46.021 8.047 1 3800100 9501 3002 6577 6710 10877 10877 -0.030984697819008034 EPSPDEEQILD 11 Unmodified _EPSPDEEQILD_ 0 0 0 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 REV__nc|ENSG00000023902|Q53GL0-2|PLEKHO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.2861938476562 2 636.285522 1270.55649 0.22449 0.00014284 0.89439 0.00056909 1.1189 0.00071193 636.285963810447 52.823 0.22923 52.823 52.728 52.958 0 13 10 2 0 0 0 0.59689 1 29258 29258 11.495 4.2055 1 1968300 + 9502 17124 6578 6711 10878 10878 -0.0679643611474603 EPSPDFPAL 9 Unmodified _EPSPDFPAL_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7388000488281 2 486.737283 971.460012 NaN NaN NaN NaN NaN NaN NaN 67.594 1 67.594 67.094 68.094 0 0 0 0 0.6032 1 37693 37693 12.532 3.1841 1 9503 2346 6579 6712 10879 10879 -0.026859140933765957 EPSPDWVEI 9 Unmodified _EPSPDWVEI_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7528076171875 2 536.253297 1070.49204 0.8675 0.0004652 -1.2159 -0.00065201 -0.34836 -0.00018681 536.2531360453892 60.149 0.71396 54.035 53.814 54.528 -6.1147 101 37 4 0 0 0 0.30562 1 38841 38841 16.942 4.4107 1 147930000 + 9504 19896 6580 6713 10880 10880 -0.04038546410242816 EPSPGWNQW 9 Unmodified _EPSPGWNQW_ 0 0 0 REV__ENST00000475875.1_1_6:31633906-31634962:+|nuORF REV__ENST00000475875.1_1_6:31633906-31634962:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2706298828125 2 550.743431 1099.47231 -0.13164 -7.2498E-05 -3.554 -0.0019573 -3.6856 -0.0020298 550.7413232808317 25.216 0.19745 25.216 25.108 25.305 0 12 9 2 0 0 0 0.209 1 12873 12873 7.2892 2.5332 1 551340 + 9505 27583 6581 6714 10881 10881 -0.07344877630339397 EPSPPTPSF 9 Unmodified _EPSPPTPSF_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2;ENST00000549412.5_2_12:49906680-49920035:+|nuORF ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7297668457031 2 479.729458 957.444362 0.44305 0.00021254 -0.90317 -0.00043328 -0.46012 -0.00022073 479.7292714072147 49.198 0.43029 49.198 48.986 49.416 0 43 20 3 0 0 0 0.016184 1 27014 27014 67.344 31.3 1 4467600 9506 3700 6582 6715 10882 10882 -0.036062006104316424 EPSPSGLITL 10 Unmodified _EPSPSGLITL_ 0 0 0 REV__ENSG00000135736|ENST00000258214|CCDC102A REV__ENSG00000135736|ENST00000258214|CCDC102A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2790832519531 2 507.279315 1012.54408 0.54514 0.00027654 0.40893 0.00020744 0.95407 0.00048398 507.2795563715354 68.264 0.49998 68.264 68.043 68.543 0 46 23 3 0 0 0 0.63399 1 38090 38090 9.3831 2.66 1 740680 + 9507 20094 6583 6716 10883 10883 0.03830617003529824 EPSPYKFTF 9 Unmodified _EPSPYKFTF_ 0 0 0 ENSG00000125304|ENST00000376387|TM9SF2 ENSG00000125304|ENST00000376387|TM9SF2 ENSG00000125304|ENST00000376387|TM9SF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2752685546875 2 558.274032 1114.53351 NaN NaN NaN NaN NaN NaN NaN 60.993 1 60.504 60.004 61.004 -0.48932 0 0 0 0.18351 1 33220 33220 32.786 15.843 1 9508 3838 6584 6717 10884 10884 -0.019173656509110515 EPSQIIFQF 9 Unmodified _EPSQIIFQF_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.78759765625 2 554.787307 1107.56006 0.48382 0.00026841 -0.11447 -6.3506E-05 0.36935 0.00020491 554.7871343934645 87.546 0.28303 87.546 87.379 87.662 0 21 12 2 0 0 0 0.51218 1 48452 48452 6.7232 2.3939 1 405860 9509 1262 6585 6718 10885 10885 0.010583232404542287 EPSQIIFQF 9 Unmodified _EPSQIIFQF_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7879638671875 2 554.787307 1107.56006 0.68108 0.00037785 0.45948 0.00025492 1.1406 0.00063277 554.7874315390048 88.072 0.42963 87.568 87.36 87.79 -0.50423 55 19 4 0 0 0 0.06294 2 48211 48113;48211 41.84 21.425 1 7189900 9510 1262 6585 6718 10886;10887 10887 0.010583232404542287 EPSQIIFQF 9 Unmodified _EPSQIIFQF_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7896728515625 2 554.787307 1107.56006 1.4145 0.00078475 -0.13731 -7.6177E-05 1.2772 0.00070857 554.7874151360085 95.711 0.6971 89.536 89.12 89.817 -6.1757 64 41 2 0 0 0 0.01958 2 63286 63286;63407 63.961 30.992 1 25422000 9511 1262 6585 6718 10888;10889 10888 0.010583232404542287 EPSQLEVP 8 Unmodified _EPSQLEVP_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4531860351562 1 898.451639 897.444362 -0.030498 -2.7401E-05 0.3195 0.00028706 0.28901 0.00025966 898.4514131362731 65.047 0.27515 65.047 64.919 65.194 0 22 12 2 0 0 0 0.67686 1 36348 36348 19.257 0 1 1656400 9512 10851 6586 6719 10890 10890 -0.008462006104196007 EPSRETTWSI 10 Unmodified _EPSRETTWSI_ 0 0 0 ENST00000514023.5_1_3:125743683-125802950:-|nuORF;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3 ENST00000514023.5_1_3:125743683-125802950:-|nuORF ENST00000514023.5_1_3:125743683-125802950:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3001708984375 2 603.293485 1204.57242 0.416 0.00025097 -2.5416 -0.0015333 -2.1256 -0.0012824 603.2898134497086 59.912 1.1113 53.797 53.496 54.607 -6.1147 255 60 6 0 0 0 0.32072 1 38341 38341 26.268 4.7312 1 1095700000 9513 3046 6587 6720 10891 10891 -0.021686850871901697 EPSRMLTPGF 10 Unmodified _EPSRMLTPGF_ 0 0 0 REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7831420898438 2 567.784241 1133.55393 0.76482 0.00043425 -1.132 -0.00064274 -0.3672 -0.00020849 567.784940234082 82.619 1.8045 76.444 75.637 77.442 -6.1757 229 99 3 0 0 0 0.56348 1 54011 54011 13.042 2.2185 1 40995000 + 9514 19629 6588 6721 10892 10892 -0.0075051826272556355 EPSRPLFSL 9 Unmodified _EPSRPLFSL_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2451171875 2 523.287474 1044.5604 0.42097 0.00022029 -0.55292 -0.00028934 -0.13195 -6.9047E-05 523.2874782565218 56.776 0.42712 56.776 56.45 56.877 0 25 18 2 0 0 0 0.18521 1 31496 31496 11.64 0 1 1102300 9515 9344 6589 6722 10893 10893 0.03989742960266085 EPSRSDRLY 9 Unmodified _EPSRSDRLY_ 0 0 0 REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF REV__ENST00000445099.2_1_9:90431423-90431870:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.781494140625 2 561.780544 1121.54654 NaN NaN NaN NaN NaN NaN NaN 92.842 1 92.385 91.885 92.885 -0.4574 0 0 0 0.82396 1 50740 50740 4.756 0 1 + 9516 27130 6590 6723 10894 10894 -0.009375345387979905 EPSSLLQEL 9 Unmodified _EPSSLLQEL_ 0 0 0 REV__ENST00000498522.5_1_9:35605559-35607650:+|nuORF REV__ENST00000498522.5_1_9:35605559-35607650:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.2675476074219 2 508.268947 1014.52334 NaN NaN NaN NaN NaN NaN NaN 80.033 1 73.857 73.357 74.357 -6.1757 0 0 0 0.098163 1 52488 52488 43.858 7.7313 1 + 9517 18551 6591 6724 10895 10895 0.01666026623865946 EPSSNGVEPL 10 Unmodified _EPSSNGVEPL_ 0 0 0 REV__ENSG00000181418|ENST00000421952|DDN REV__ENSG00000181418|ENST00000421952|DDN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7476806640625 2 514.748379 1027.4822 NaN NaN NaN NaN NaN NaN NaN 32.847 1 32.847 32.347 33.347 0 0 0 0 0.54588 1 17188 17188 24.021 2.2739 1 + 9518 23204 6592 6725 10896 10896 -0.030437344156098334 EPSTIPPCRR 10 Unmodified _EPSTIPPCRR_ 0 0 0 ENST00000537165.5_1_12:109907385-109907427:-|nuORF ENST00000537165.5_1_12:109907385-109907427:-|nuORF ENST00000537165.5_1_12:109907385-109907427:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3021850585938 2 578.30059 1154.58663 0.29698 0.00017174 1.1357 0.0006568 1.4327 0.00082855 578.3011490165856 78.33 0.3418 78.33 78.127 78.469 0 38 15 3 0 0 0 0.64183 1 43497 43497 14.838 3.198 1 2025000 9519 14987 6593 6726 10897 10897 0.0155168886010415 EPSVDADGES 10 Unmodified _EPSVDADGES_ 0 0 0 REV__ENST00000528764.1_1_11:86736467-86736701:+|nuORF REV__ENST00000528764.1_1_11:86736467-86736701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2046508789062 2 503.204001 1004.39345 0.73849 0.00037161 1.2006 0.00060413 1.9391 0.00097574 503.20457515682523 39.022 0.30068 39.022 38.834 39.135 0 30 13 3 0 0 0 0.66569 1 20906 20906 6.7232 0 1 4831000 + 9520 28411 6594 6727 10898 10898 -0.10857194445941332 EPSVILSKS 9 Unmodified _EPSVILSKS_ 0 0 0 ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5413818359375 1 959.540788 958.533512 0.44284 0.00042492 -0.17538 -0.00016829 0.26745 0.00025663 959.5409286976743 71.771 0.59221 71.294 70.907 71.499 -0.47609 44 23 3 0 0 0 0.30562 1 39179 39179 16.942 9.0321 1 1856100 9521 5871 6595 6728 10899 10899 0.05258634349104341 EPSVNSLLLTC 11 Unmodified _EPSVNSLLLTC_ 0 0 0 REV__nc|ENSG00000105695|P20916-2|MAG REV__nc|ENSG00000105695|P20916-2|MAG MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5376586914062 3 392.537401 1174.59037 1.5657 0.00061458 -1.2071 -0.00047382 0.35859 0.00014076 392.5368511586792 34.053 0.41396 30.068 29.824 30.238 -3.9853 57 22 3 0 0 0 0.62338 1 19637 19637 5.5233 0 1 19045000 + 9522 18448 6596 6729 10900 10900 0.010063138433224594 EPSVSIPFL 9 Unmodified _EPSVSIPFL_ 0 0 0 ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119401524-119435218:+|nuORF ENSG00000143702|ENST00000366542|CEP170 ENSG00000143702|ENST00000366542|CEP170 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7709655761719 2 494.771126 987.527698 0.65233 0.00032275 -0.45852 -0.00022686 0.19381 9.5891E-05 494.77079302781885 84.412 0.51294 83.912 83.666 84.179 -0.49961 58 23 3 0 0 0 0.12841 2 46097 46097;46307 30.225 16.717 1 3746900 9523 5544 6597 6730 10901;10902 10901 0.033435358374163116 EPSVSIPFL 9 Unmodified _EPSVSIPFL_ 0 0 0 ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119401524-119435218:+|nuORF ENSG00000143702|ENST00000366542|CEP170 ENSG00000143702|ENST00000366542|CEP170 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7710266113281 2 494.771126 987.527698 1.1725 0.00058012 0.18689 9.247E-05 1.3594 0.00067259 494.77107238958814 91.967 0.66771 85.791 85.416 86.083 -6.1757 63 38 2 0 0 0 0.03327 1 60825 60825 53.576 11.481 1 17149000 9524 5544 6597 6730 10903 10903 0.033435358374163116 EPSVVNELP 9 Unmodified _EPSVVNELP_ 0 0 0 REV__ENST00000315366.7_1_4:114823136-114823262:-|nuORF REV__ENST00000315366.7_1_4:114823136-114823262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 983.5076293945312 1 983.504403 982.497126 0.71783 0.00070599 0.28398 0.00027929 1.0018 0.00098529 983.5049626740163 54.306 0.31102 54.306 54.173 54.484 0 29 13 3 0 0 0 0.14602 1 30232 30232 28.487 1.6032 1 1720500 + 9525 25460 6598 6731 10904 10904 0.005177574523941075 EPSYIFPSEL 10 Unmodified _EPSYIFPSEL_ 0 0 0 REV__ENSG00000158315|ENST00000372990|RHBDL2 REV__ENSG00000158315|ENST00000372990|RHBDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2960815429688 2 591.289879 1180.56521 0.8925 0.00052773 -0.01043 -6.1673E-06 0.88207 0.00052156 591.2902420685723 94.858 1.1795 88.683 87.96 89.14 -6.1757 236 67 5 0 0 0 0.52888 1 63044 63044 14.838 0 1 333300000 + 9526 21427 6599 6732 10905 10905 -0.017854176876198835 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4566040039062 1 906.456724 905.449448 -0.13539 -0.00012273 -0.23419 -0.00021228 -0.36958 -0.00033501 906.4564060042128 43.637 0.4459 43.637 43.399 43.844 0 75 22 5 0 0 0 0.0083087 3 23713 23607;23713;23820 104.8 0 1 812370000 9527 2938;13274 6600 6733 10906;10907;10908 10907 -0.007058967478201339 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7322998046875 2 453.732 905.449448 0.24897 0.00011296 -0.40425 -0.00018342 -0.15528 -7.0457E-05 453.73178125541097 43.633 0.40197 43.633 43.418 43.82 0 60 19 4 0 0 0 0.03327 1 23632 23632 53.576 0 1 319250000 9528 2938;13274 6600 6733 10909 10909 -0.007058967478201339 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 907.460205078125 1 906.456724 905.449448 0.11807 0.00010703 0.44298 0.00040154 0.56105 0.00050857 906.4571925810158 45.694 0.21753 45.694 45.586 45.803 0 14 10 2 0 0 0 0.30562 1 24926 24926 16.942 0 1 1417900 9529 2938;13274 6600 6733 10910 10910 -0.007058967478201339 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 906.4561767578125 1 906.456724 905.449448 0.58455 0.00052987 -0.82455 -0.00074742 -0.24 -0.00021755 906.4557281311519 43.644 0.17018 43.628 43.528 43.698 -0.015671 11 7 2 0 0 0 0.0083087 1 23382 23382 97.075 0 1 10550000 9530 2938;13274 6600 6733 10911 10911 -0.007058967478201339 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.4573364257812 1 906.456724 905.449448 0.86579 0.0007848 -0.34228 -0.00031027 0.5235 0.00047453 906.4563034133464 50.704 0.71708 45.055 44.698 45.415 -5.649 143 44 4 0 0 0 0.0077963 4 31765 31624;31765;31895;32024 109.63 0 1 1283300000 9531 2938;13274 6600 6733 10912;10913;10914;10915 10913 -0.007058967478201339 EPTAAALAY 9 Unmodified _EPTAAALAY_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000113013|ENST00000297185|HSPA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7322692871094 2 453.732 905.449448 1.1619 0.0005272 -0.2019 -9.161E-05 0.96002 0.00043559 453.7318465646864 50.698 0.81195 45.049 44.585 45.397 -5.649 145 50 4 0 0 0 0.013472 4 31652 31652;31791;31920;32061 70.716 0 1 1035899999.9999999 9532 2938;13274 6600 6733 10916;10917;10918;10919 10916 -0.007058967478201339 EPTEDSGISL 10 Unmodified _EPTEDSGISL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.247314453125 2 524.245669 1046.47678 0.91221 0.00047822 0.93366 0.00048947 1.8459 0.00096769 524.2458952955138 47.594 0.3452 47.594 47.362 47.707 0 25 15 2 0 0 0 0.42068 1 26070 26070 20.454 1.1966 1 1734000 9533 10851 6601 6734 10920 10920 -0.04459457998086691 EPTELYNIL 9 Unmodified _EPTELYNIL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1;nc|ENSG00000127952|Q9Y6J8-4|STYXL1;nc|ENSG00000127952|Q9Y6J8-5|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2849731445312 2 546.284597 1090.55464 0.25348 0.00013847 0.36669 0.00020032 0.62017 0.00033879 546.2851580389174 79.493 0.42706 79.493 79.282 79.709 0 33 17 3 0 0 0 0.036857 1 44142 44142 67.344 37.119 1 2818100 9534 4037 6602 6735 10921 10921 0.012985996579573111 EPTGSMVTY 9 Unmodified _EPTGSMVTY_ 0 0 0 REV__nc|ENSG00000079337|O95398-3|RAPGEF3;REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7217102050781 2 492.720775 983.426998 -0.43723 -0.00021543 2.1795 0.0010739 1.7423 0.00085846 492.72211051090596 33.214 0.33411 33.214 33.068 33.402 0 29 16 2 0 0 0 0.14602 1 17445 17445 28.487 1.6032 1 1674200 + 9535 17647;17889 6603 6736 10922 10922 -0.06537864207723487 EPTGYSAEL 9 Unmodified _EPTGYSAEL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4443969726562 1 966.441468 965.434192 -0.45136 -0.00043621 1.2653 0.0012228 0.81392 0.0007866 966.4418919195745 41.142 0.26036 41.142 41.065 41.325 0 19 12 2 0 0 0 0.019303 1 22157 22157 64.236 28.109 1 1632700 9536 1622 6604 6737 10923 10923 -0.049908083356626776 EPTIHASLHE 10 Unmodified _EPTIHASLHE_ 0 0 0 REV__nc|ENSG00000143324|Q9UBH6-2|XPR1 REV__nc|ENSG00000143324|Q9UBH6-2|XPR1 MSMS AL20221201_MKP_PDAC_01 4 378.5246887207031 3 378.524372 1132.55129 NaN NaN NaN NaN NaN NaN NaN 14.945 1 12.418 11.918 12.918 -2.5273 0 0 0 0.8671 1 7627 7627 8.4443 4.2548 1 + 9537 20624 6605 6738 10924 10924 -0.009686503960665505 EPTLPTLSF 9 Unmodified _EPTLPTLSF_ 0 0 0 nc|ENSG00000163462|Q7Z4K8-4|TRIM46;nc|ENSG00000163462|Q7Z4K8-3|TRIM46;nc|ENSG00000163462|Q7Z4K8-2|TRIM46;ENST00000468878.1_1_1:155147264-155152278:+|nuORF;nc|ENSG00000163462|Q7Z4K8-5|TRIM46;ENSG00000163462|ENST00000334634|TRIM46 nc|ENSG00000163462|Q7Z4K8-4|TRIM46 nc|ENSG00000163462|Q7Z4K8-4|TRIM46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7694702148438 2 502.768583 1003.52261 -1.2183 -0.00061254 1.4969 0.00075259 0.27856 0.00014005 502.76949136780087 77.762 0.23097 77.28 77.143 77.374 -0.4826 15 9 2 0 0 0 0.023164 1 42588 42588 60.39 9.5345 1 1578500 9538 6995 6606 6739 10925 10925 0.020992319748074806 EPTLRLEY 8 Unmodified _EPTLRLEY_ 0 0 0 nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1 nc|ENSG00000115866|P14868-2|DARS1 nc|ENSG00000115866|P14868-2|DARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.771240234375 2 510.771657 1019.52876 0.55753 0.00028477 2.8182 0.0014395 3.3757 0.0017242 510.7726997328 53.292 0.66674 53.292 52.82 53.486 0 86 30 4 0 0 0 0.75262 1 29635 29635 12.532 0.89125 1 36169000 9539 3171 6607 6740 10926 10926 0.01977750206322071 EPTNDNQDL 9 Unmodified _EPTNDNQDL_ 0 0 0 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5 REV__nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2451171875 2 523.225268 1044.43598 0.51275 0.00026828 -1.2181 -0.00063732 -0.70531 -0.00036903 523.2256575249971 56.802 0.33784 56.802 56.609 56.947 0 36 13 4 0 0 0 0.18521 1 31496 31496 11.64 1.5664 1 7354500 + 9540 24511 6608 6741 10927 10927 -0.08445799317723868 EPTPEPVEEK 10 Unmodified _EPTPEPVEEK_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2811279296875 2 577.782418 1153.55028 -0.177 -0.00010227 -3.4154 -0.0019733 -3.5924 -0.0020756 577.7809342232841 33.575 0.31328 33.416 33.171 33.484 -0.15918 19 12 2 0 0 0 0.23693 1 17395 17395 6.2058 0 1 934160 + 9541 23805 6609 6742 10928 10928 -0.020349095556412067 EPTPEPVEEK 10 Unmodified _EPTPEPVEEK_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 577.782418 1153.55028 0.28535 0.00016487 -5.9736 -0.0034515 -5.6883 -0.0032866 577.7791934411013 33.28 0.24821 33.309 33.163 33.411 0.028934 -0.053263 -0.00074138 NaN 6.2058 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1138900 + 9542 23805 6609 6742 -0.020349095556412067 EPTPGGVKY 9 Unmodified _EPTPGGVKY_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2449951171875 2 474.245275 946.475997 -0.45172 -0.00021423 0.046978 2.2279E-05 -0.40474 -0.00019195 474.2452983193264 27.157 0.21921 27.157 27.033 27.253 0 18 10 2 0 0 0 0.25681 1 13962 13962 19.257 4.4187 1 2650600 9543 7617 6610 6743 10929 10929 0.0006179214352641793 EPTPRPLAL 9 Unmodified _EPTPRPLAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2893981933594 2 497.290017 992.565481 0.79244 0.00039407 -0.62469 -0.00031065 0.16775 8.3419E-05 497.28960028359717 47.687 0.31549 47.687 47.494 47.81 0 34 14 3 0 0 0 0.2143 1 26073 26073 21.747 6.9084 1 6873900 9544 5356 6611 6744 10930 10930 0.06890046822900331 EPTPRPLAL 9 Unmodified _EPTPRPLAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2905578613281 2 497.290017 992.565481 0.56183 0.00027939 0.24567 0.00012217 0.8075 0.00040156 497.29021723663425 47.877 0.2247 47.524 47.409 47.634 -0.3526 16 10 2 0 0 0 0.2143 1 25682 25682 21.747 3.6117 1 3469100 9545 5356 6611 6744 10931 10931 0.06890046822900331 EPTPRPLAL 9 Unmodified _EPTPRPLAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2908935546875 2 497.290017 992.565481 0.93329 0.00046412 0.10971 5.4558E-05 1.043 0.00051868 497.29025560623563 53.022 0.29818 47.218 47.085 47.383 -5.8042 27 16 2 0 0 0 0.039985 1 33467 33467 49.933 18.665 1 20832000 9546 5356 6611 6744 10932 10932 0.06890046822900331 EPTPWDIL 8 Unmodified _EPTPWDIL_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 970.4883422851562 1 970.488024 969.480748 0.16194 0.00015716 -0.31252 -0.0003033 -0.15058 -0.00014613 970.4872937738662 54.124 0.296 53.657 53.507 53.803 -0.46664 21 14 2 0 0 0 0.19792 1 29304 29304 70.716 7.1527 1 1846500 + 9547 17700 6612 6745 10933 10933 -0.00521323713712718 EPTQPLIAI 9 Unmodified _EPTQPLIAI_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2847900390625 2 491.2844 980.554247 NaN NaN NaN NaN NaN NaN NaN 72.216 1 71.74 71.24 72.24 -0.47609 0 0 0 0.6306 1 39521 39521 11.64 0 1 + 9548 20360 6613 6746 10934 10934 0.06319224728747486 EPTRRFFY 8 Unmodified _EPTRRFFY_ 0 0 0 REV__ENSG00000198842|ENST00000361200|STYXL2 REV__ENSG00000198842|ENST00000361200|STYXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.285400390625 2 558.285266 1114.55598 0.38341 0.00021405 1.1296 0.00063061 1.513 0.00084466 558.2854404454432 61.64 0.84688 61.64 61.275 62.122 0 85 37 3 0 0 0 0.80676 1 34208 34208 2.5775 0.27475 1 5511100 + 9549 24076 6614 6747 10935 10935 0.0032827853738126578 EPTSETQDELQ 11 Unmodified _EPTSETQDELQ_ 0 0 0 nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-4|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL nc|ENSG00000143748|O15381-3|NVL nc|ENSG00000143748|O15381-3|NVL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.781005859375 2 638.780604 1275.54666 NaN NaN NaN NaN NaN NaN NaN 38.99 1 38.99 38.49 39.49 0 0 0 0 0.86932 1 20866 20866 8.7454 1.1365 1 9550 5546 6615 6748 10936 10936 -0.08009624120109038 EPTVPVETF 9 Unmodified _EPTVPVETF_ 0 0 0 REV__nc|ENSG00000143514|Q13625|TP53BP2;REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7562255859375 2 509.758215 1017.50188 NaN NaN NaN NaN NaN NaN NaN 19.664 1 19.664 19.164 20.164 0 0 0 0 0.50124 1 9849 9849 15.847 0 1 + 9551 30124;20647 6616 6749 10937 10937 -0.006173584048497105 EPTVVTAAL 9 Unmodified _EPTVVTAAL_ 0 0 0 ENSG00000117360|ENST00000324862|PRPF3;ENST00000496202.5_1_1:150297400-150300075:+|nuORF ENSG00000117360|ENST00000324862|PRPF3 ENSG00000117360|ENST00000324862|PRPF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7552490234375 2 450.755475 899.496398 NaN NaN NaN NaN NaN NaN NaN 56.025 1 56.025 55.525 56.525 0 0 0 0 0.026323 1 31149 31149 70.716 19.86 1 9552 3296 6617 6750 10938 10938 0.04262962803340997 EPTWIIMEL 9 Unmodified _EPTWIIMEL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8634033203125 3 377.863337 1130.56818 0.65639 0.00024802 -0.29589 -0.00011181 0.36049 0.00013622 378.19814990518734 15.002 0.22898 12.475 12.343 12.572 -2.5273 75 40 2 0 0 0 0.41742 1 7620 7620 7.609 2.7119 1 3295400 9553 3552 6618 6751 10939 10939 0.008121341655396463 EPTWIIMEL 9 Unmodified _EPTWIIMEL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7910766601562 2 566.291368 1130.56818 1.1314 0.00064069 -2.7891 -0.0015794 -1.6577 -0.00093875 566.790389670614 101.31 0.10113 95.134 95.091 95.192 -6.1757 12 5 3 0 0 0 0.14602 1 67967 67967 28.487 17.372 1 36362000 9554 3552 6618 6751 10940 10940 0.008121341655396463 EPTWLAAPPR 10 Unmodified _EPTWLAAPPR_ 0 0 0 nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS;ENSG00000156860|ENST00000356166|FBRS;ENST00000494101.1_1_16:30680055-30680963:+|nuORF nc|ENSG00000156860|Q9HAH7|FBRS nc|ENSG00000156860|Q9HAH7|FBRS MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1537170410156 3 379.873224 1136.59784 1.1872 0.00045097 -0.20223 -7.6821E-05 0.98492 0.00037415 379.8731081075106 47.074 0.58601 41.993 41.751 42.337 -5.0805 160 53 4 0 0 0 0.44373 1 29134 29134 12.175 6.3913 1 234300000 9555 6485 6619 6752 10941 10941 0.03500834225883409 EPVAQVFVH 9 Unmodified _EPVAQVFVH_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2747192382812 2 513.274367 1024.53418 NaN NaN NaN NaN NaN NaN NaN 45.413 1 45.413 44.913 45.913 0 0 0 0 0.060495 1 24753 24753 53.576 34.214 1 9556 6143 6620 6753 10942 10942 0.022894737888236705 EPVARTWI 8 Unmodified _EPVARTWI_ 0 0 0 REV__ENST00000331289.4_1_11:2289798-2289960:-|nuORF REV__ENST00000331289.4_1_11:2289798-2289960:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.2690734863281 2 486.269084 970.523616 NaN NaN NaN NaN NaN NaN NaN 86.319 1 80.144 79.644 80.644 -6.1757 0 0 0 0.88073 1 56906 56906 19.439 0 1 + 9557 25602 6621 6754 10943 10943 0.0371749113437545 EPVDHGKIEY 10 Unmodified _EPVDHGKIEY_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1961975097656 3 396.196144 1185.5666 -0.48863 -0.00019359 -0.012208 -4.8368E-06 -0.50084 -0.00019843 396.1961031822523 25.316 0.40047 25.316 25.128 25.528 0 53 19 4 0 0 0 0.5012 2 12930 12930;13031 16.275 7.5228 1 13208000 9558 5730 6622 6755 10944;10945 10944 -0.018757835988708393 EPVDHGKIEY 10 Unmodified _EPVDHGKIEY_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7904663085938 2 593.790578 1185.5666 -0.44372 -0.00026348 -0.17637 -0.00010473 -0.62009 -0.0003682 593.7902850869536 25.321 0.28191 25.321 25.184 25.466 0 29 13 3 0 0 0 0.036856 1 12966 12966 49.527 30.27 1 3949300 9559 5730 6622 6755 10946 10946 -0.018757835988708393 EPVDHGKIEY 10 Unmodified _EPVDHGKIEY_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.1963806152344 3 396.196144 1185.5666 0.82908 0.00032848 -0.79553 -0.00031518 0.033557 1.3295E-05 396.19617354116656 28.413 0.49263 25.265 25.041 25.534 -3.1482 64 25 4 0 0 0 0.5012 2 15882 15764;15882 16.275 4.3615 1 45901000 9560 5730 6622 6755 10947;10948 10948 -0.018757835988708393 EPVDHGKIEY 10 Unmodified _EPVDHGKIEY_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.79150390625 2 593.790578 1185.5666 0.37197 0.00022087 -0.085269 -5.0632E-05 0.2867 0.00017024 593.7905530987772 28.407 0.39869 25.259 25.077 25.476 -3.1482 41 20 3 0 0 0 0.0082036 2 15922 15804;15922 100.71 58.753 1 13725000 9561 5730 6622 6755 10949;10950 10950 -0.018757835988708393 EPVDISTAM 9 Oxidation (M) _EPVDISTAM(Oxidation (M))_ EPVDISTAM(1) EPVDISTAM(140) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.4443969726562 1 978.444839 977.437562 -0.49494 -0.00048427 0.40583 0.00039708 -0.089105 -8.7184E-05 978.4454937583022 33.26 0.31778 33.26 33.068 33.386 0 29 15 2 0 0 0 0.0010099 1 17448 17448 139.54 101.57 1 2046500 9562 6628;16309 6623 6756 10951 10951 1156 -0.052058815533087 EPVDISTAM 9 Unmodified _EPVDISTAM_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.4484252929688 1 962.449924 961.442648 0.46785 0.00045028 -0.016396 -1.578E-05 0.45145 0.0004345 962.449550472102 49.454 0.20221 49.454 49.333 49.536 0 14 8 2 0 0 0 0.052168 1 27203 27203 44.407 21.259 1 1593700 9563 6628;16309 6623 6757 10952 10952 -0.03961577690699869 EPVEGEAAEEL 11 Unmodified _EPVEGEAAEEL_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.3057861328125 2 586.769508 1171.52446 -0.072478 -4.2528E-05 1.0006 0.00058711 0.92811 0.00054458 586.7702697929581 70.325 0.28628 70.325 70.139 70.425 0 22 12 3 0 0 0 0.30139 1 39178 39178 5.7319 1.4026 1 978920 9564 8100 6624 6758 10953 10953 -0.054438037979025466 EPVELAQEF 9 Unmodified _EPVELAQEF_ 0 0 0 ENSG00000213619|ENST00000263774|NDUFS3;ENST00000533507.5_1_11:47602194-47606030:+|nuORF ENSG00000213619|ENST00000263774|NDUFS3 ENSG00000213619|ENST00000263774|NDUFS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2618408203125 2 531.261122 1060.50769 0.28655 0.00015223 -0.45938 -0.00024405 -0.17283 -9.1819E-05 531.2608344171952 61.727 0.35941 61.727 61.548 61.907 0 33 15 3 0 0 0 0.070838 1 34381 34381 39.957 27.426 1 3460500 9565 10447 6625 6759 10954 10954 -0.020142598931897737 EPVEQFSKL 9 Unmodified _EPVEQFSKL_ 0 0 0 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7854614257812 2 538.784764 1075.55498 -0.15375 -8.2837E-05 1.1587 0.00062429 1.005 0.00054145 538.7855662684921 45.061 0.23299 45.061 44.976 45.209 0 27 11 3 0 0 0 0.01958 1 24533 24533 63.961 31.655 1 8187800 9566 6260 6626 6760 10955 10955 0.020220193778186513 EPVEVLPNVNY 11 Unmodified _EPVEVLPNVNY_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;nc|ENSG00000133243|Q9BX70-2|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 ENSG00000133243|ENST00000255608|BTBD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.8271484375 2 636.82716 1271.63977 0.11433 7.2807E-05 0.7651 0.00048724 0.87943 0.00056004 636.8279458660479 65.953 0.29059 65.953 65.845 66.135 0 36 14 3 0 0 0 0.073964 2 36758 36758;36858 45.7 22.963 1 2720500 9567 4499 6627 6761 10956;10957 10956 0.014813451237841946 EPVGLSIDY 9 Unmodified _EPVGLSIDY_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7504577636719 2 496.75039 991.486227 0.89613 0.00044515 -0.054303 -2.6975E-05 0.84182 0.00041818 496.75052946683405 54.344 0.60907 54.344 54.132 54.741 0 52 26 3 0 0 0 0.042911 1 30089 30089 48.346 10.195 1 18467000 9568 7792 6628 6762 10958 10958 -0.009856449219114438 EPVGWIAVY 9 Unmodified _EPVGWIAVY_ 0 0 0 nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3-1|C11orf68 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2717895507812 2 517.271293 1032.52803 NaN NaN NaN NaN NaN NaN NaN 80.4 1 80.4 79.9 80.9 0 0 0 0 0.33856 1 44644 44644 23.148 5.0134 1 9569 8528 6629 6763 10959 10959 0.013069555572883473 EPVGWIAVY 9 Unmodified _EPVGWIAVY_ 0 0 0 nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3-1|C11orf68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2688598632812 2 517.271293 1032.52803 0.85535 0.00044245 -3.1327 -0.0016204 -2.2773 -0.001178 517.2699182862978 80.215 0.45301 79.726 79.479 79.932 -0.48932 34 17 3 0 0 0 0.37804 1 43878 43878 13.508 0.46542 1 2460900 9570 8528 6629 6763 10960 10960 0.013069555572883473 EPVGWIAVY 9 Unmodified _EPVGWIAVY_ 0 0 0 nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3-1|C11orf68 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2711791992188 2 517.271293 1032.52803 NaN NaN NaN NaN NaN NaN NaN 81.024 1 80.531 80.031 81.031 -0.49247 0 0 0 0.096036 1 44368 44368 44.407 26.272 1 9571 8528 6629 6763 10961 10961 0.013069555572883473 EPVGWIAVY 9 Unmodified _EPVGWIAVY_ 0 0 0 nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3-1|C11orf68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2713012695312 2 517.271293 1032.52803 1.2889 0.00066671 -1.2472 -0.00064515 0.041673 2.1556E-05 517.2704228482826 88.256 0.49901 82.081 81.83 82.329 -6.1757 74 27 4 0 0 0 0.023164 2 58225 58100;58225 60.39 37.241 1 34779000 9572 8528 6629 6763 10962;10963 10963 0.013069555572883473 EPVGWIAVY 9 Unmodified _EPVGWIAVY_ 0 0 0 nc|nan|Q9H3H3-1|C11orf68;nc|nan|Q9H3H3|C11orf68;ENSG00000175573|ENST00000438576|C11orf68 nc|nan|Q9H3H3-1|C11orf68 nc|nan|Q9H3H3-1|C11orf68 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.271293 1032.52803 0.2891 0.00014954 -2.0151 -0.0010424 -1.726 -0.00089282 517.2704080814207 79.634 0.24496 79.689 79.55 79.795 0.05497 -0.018449 0.00041514 NaN 13.508 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1342400 9573 8528 6629 6763 0.013069555572883473 EPVHWVGWTRQ 11 Unmodified _EPVHWVGWTRQ_ 0 0 0 REV__ENSG00000187994|ENST00000591812|RINL REV__ENSG00000187994|ENST00000591812|RINL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 697.8517456054688 2 697.851835 1393.68912 0.37262 0.00026003 0.24806 0.00017311 0.62068 0.00043315 697.8519242398523 60.173 0.34278 60.173 60.003 60.345 0 42 14 4 0 0 0 0.42108 2 33512 33512;33626 20.415 0 1 7340700 + 9574 23679 6630 6764 10964;10965 10964 0.008020979232242098 EPVKAPPAV 9 Unmodified _EPVKAPPAV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 454.2686462402344 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 14.713 1 12.21 11.71 12.71 -2.5029 0 0 0 0.7818 1 7492 7492 6.7232 1.4925 1 + 9575 21279 6631 6765 10966 10966 0.06046972902845482 EPVKDHNWRY 10 Unmodified _EPVKDHNWRY_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.5544738769531 3 448.554554 1342.64183 -0.035114 -1.575E-05 0.41916 0.00018802 0.38405 0.00017227 448.55471797493715 22.693 0.24559 22.693 22.57 22.816 0 43 11 6 0 0 0 0.047829 1 11521 11521 44.945 41.625 1 31100000 9576 10560 6632 6766 10967 10967 -0.015781813477588003 EPVKDHNWRY 10 Unmodified _EPVKDHNWRY_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.5542602539062 3 448.554554 1342.64183 -0.16434 -7.3717E-05 -0.45468 -0.00020395 -0.61903 -0.00027767 448.55417002823566 22.712 0.21701 22.735 22.602 22.819 0.022896 25 8 4 0 0 0 0.52097 1 11536 11536 17.863 15.61 1 5418500 9577 10560 6632 6766 10968 10968 -0.015781813477588003 EPVKDHNWRY 10 Unmodified _EPVKDHNWRY_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.554443359375 3 448.554554 1342.64183 0.21745 9.7536E-05 -0.22923 -0.00010282 -0.011783 -5.2852E-06 448.55441211590096 25.024 0.43413 22.141 21.888 22.322 -2.8831 133 41 4 0 0 0 0.078742 2 13541 13541;13647 41.347 35.479 1 221060000 9578 10560 6632 6766 10969;10970 10969 -0.015781813477588003 EPVLINPVL 9 Unmodified _EPVLINPVL_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3029174804688 2 497.302593 992.590633 0.26089 0.00012974 0.48411 0.00024075 0.745 0.00037049 497.30279208511064 81.546 0.34525 81.546 81.37 81.715 0 43 17 3 0 0 0 0.2143 1 45214 45214 21.747 4.8044 1 1539500 9579 5968 6633 6767 10971 10971 0.09404101625477779 EPVLPQLLL 9 Unmodified _EPVLPQLLL_ 0 0 0 REV__ENSG00000013523|ENST00000251089|ANGEL1 REV__ENSG00000013523|ENST00000251089|ANGEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.3174438476562 2 511.318243 1020.62193 0.25409 0.00012992 0.11133 5.6923E-05 0.36542 0.00018684 511.31825251407975 91.245 0.3027 90.75 90.586 90.889 -0.49457 21 12 2 0 0 0 0.36964 1 49848 49848 13.906 0.39817 1 523220 + 9580 17076 6634 6768 10972 10972 0.11244674659576503 EPVLPQLLL 9 Unmodified _EPVLPQLLL_ 0 0 0 REV__ENSG00000013523|ENST00000251089|ANGEL1 REV__ENSG00000013523|ENST00000251089|ANGEL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 511.318243 1020.62193 0.25409 0.00012992 0.11133 5.6923E-05 0.36542 0.00018684 511.31825251407975 91.245 0.3027 90.75 90.586 90.889 -0.49457 0 0 NaN 13.906 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 523220 + 9581 17076 6634 6768 0.11244674659576503 EPVLTYQYL 9 Unmodified _EPVLTYQYL_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2949829101562 2 563.294965 1124.57538 0.41615 0.00023442 0.6798 0.00038293 1.096 0.00061735 563.2945863493406 61.356 0.62265 61.356 60.907 61.529 0 61 27 3 0 0 0 0.32871 1 34133 34133 15.847 2.8047 1 1602900 9582 7661 6635 6769 10973 10973 0.018071900376071426 EPVPASIPNYY 11 Unmodified _EPVPASIPNYY_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3079223632812 2 625.308603 1248.60265 0.57958 0.00036242 -1.2324 -0.00077063 -0.65283 -0.00040822 625.3079587322427 59.973 0.3204 59.973 59.796 60.116 0 35 14 3 0 0 0 0.18636 2 33394 33394;33505 32.786 20.545 1 7211300 9583 9940 6636 6770 10974;10975 10974 -0.011703264219931953 EPVPASIPNYY 11 Unmodified _EPVPASIPNYY_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.3074951171875 2 625.308603 1248.60265 -0.25548 -0.00015975 0.42133 0.00026346 0.16585 0.00010371 625.3087554299185 60.718 0.24394 60.229 60.089 60.332 -0.48932 26 11 3 0 0 0 0.48615 1 33034 33034 17.113 10.907 1 4965100 9584 9940 6636 6770 10976 10976 -0.011703264219931953 EPVPASIPNYY 11 Unmodified _EPVPASIPNYY_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3086547851562 2 625.308603 1248.60265 0.39338 0.00024599 0.4548 0.00028439 0.84818 0.00053038 625.3085055442016 67.87 0.39429 61.694 61.546 61.94 -6.1757 49 22 3 0 0 0 0.017265 2 44359 44206;44359 60.074 42.961 1 30221000 9585 9940 6636 6770 10977;10978 10978 -0.011703264219931953 EPVPGLEL 8 Unmodified _EPVPGLEL_ 0 0 0 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.466552734375 1 853.466561 852.459284 0.79391 0.00067757 -0.93995 -0.00080221 -0.14604 -0.00012464 853.4652771048983 101.35 0.086937 95.177 95.144 95.231 -6.1757 6 4 2 0 0 0 0.37649 1 68016 68016 46.921 0 1 9584000 9586 10384 6637 6771 10979 10979 0.027152912575729715 EPVPRRRHCIW 11 Unmodified _EPVPRRRHCIW_ 0 0 0 ENST00000302824.6_1_15:81614791-81616363:-|nuORF ENST00000302824.6_1_15:81614791-81616363:-|nuORF ENST00000302824.6_1_15:81614791-81616363:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.9475708007812 4 362.947753 1447.76191 0.82743 0.00030031 -0.30717 -0.00011149 0.52026 0.00018883 362.94766327691815 14.538 0.26025 12.036 11.903 12.163 -2.5029 109 47 3 0 0 0 0.73114 1 7340 7340 1.3296 0 1 5457800 9587 11588 6638 6772 10980 10980 0.05593528445024276 EPVPVVQACGV 11 Unmodified _EPVPVVQACGV_ 0 0 0 REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2 REV__nc|ENSG00000134326|Q5EBM0-2|CMPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2850341796875 2 549.286617 1096.55868 0.47047 0.00025842 -1.0783 -0.0005923 -0.60784 -0.00033388 549.2858270035318 58.211 0.33154 58.211 58.058 58.39 0 35 12 4 0 0 0 0.088819 1 32370 32370 43.772 3.8151 1 7652800 + 9588 19977 6639 6773 10981 10981 0.014263658800018675 EPVPWDEKH 9 Unmodified _EPVPWDEKH_ 0 0 0 REV__ENST00000529652.1_1_17:80558017-80559372:+|nuORF REV__ENST00000529652.1_1_17:80558017-80559372:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7732543945312 2 568.772188 1135.52982 0.34753 0.00019766 -0.92176 -0.00052427 -0.57423 -0.00032661 568.7716223168394 48.934 0.86494 48.891 48.591 49.456 -0.04369 146 42 6 0 0 0 0.34999 1 26676 26676 14.838 4.0143 1 794550000 + 9589 28425 6640 6774 10982 10982 -0.03252035424770838 EPVQDTKKWTY 11 Unmodified _EPVQDTKKWTY_ 0 0 0 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.8504638671875 2 697.851167 1393.68778 -0.30683 -0.00021412 -0.26701 -0.00018633 -0.57384 -0.00040045 697.8509323274367 60.893 0.34778 60.404 60.23 60.578 -0.48932 50 16 4 0 0 0 0.30985 2 33222 33121;33222 26.268 0 1 37108000 + 9590 20006 6641 6775 10983;10984 10984 0.006684190438136284 EPVQDTKKWTY 11 Unmodified _EPVQDTKKWTY_ 0 0 0 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 697.851167 1393.68778 0.44595 0.0003112 -1.709 -0.0011926 -1.263 -0.00088139 697.8504321008776 60.566 0.13747 60.522 60.415 60.553 -0.04351 0.059183 -0.0018648 NaN 26.268 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4209200 + 9591 20006 6641 6775 0.006684190438136284 EPVQHHFL 8 Unmodified _EPVQHHFL_ 0 0 0 REV__ENST00000361757.7_1_19:1109529-1111037:-|nuORF REV__ENST00000361757.7_1_19:1109529-1111037:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7586059570312 2 503.758884 1005.50321 -0.61479 -0.0003097 0.49054 0.00024711 -0.12425 -6.2592E-05 503.759089551434 42.046 0.28257 41.739 41.597 41.879 -0.30682 33 13 3 0 0 0 0.50586 1 22286 22286 34.187 34.187 1 52401000 + 9592 25937 6642 6776 10985 10985 0.000683204745769217 EPVQLTFAL 9 Unmodified _EPVQLTFAL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2846984863281 2 509.2844 1016.55425 0.21435 0.00010916 0.0025341 1.2906E-06 0.21688 0.00011045 509.28403797038254 87.782 0.28536 87.278 87.136 87.421 -0.50423 30 13 3 0 0 0 0.25681 1 48068 48068 19.257 8.4331 1 1894800 9593 4431 6643 6777 10986 10986 0.04663224728756177 EPVQLTFAL 9 Unmodified _EPVQLTFAL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2835083007812 2 509.2844 1016.55425 1.1846 0.00060331 -0.79788 -0.00040635 0.38673 0.00019696 509.2838506963078 95.561 0.41342 89.385 89.23 89.644 -6.1757 32 25 2 0 0 0 0.044011 2 63252 63252;63383 47.749 17.112 1 9955100 9594 4431 6643 6777 10987;10988 10987 0.04663224728756177 EPVQLTFALRY 11 Unmodified _EPVQLTFALRY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 668.8668823242188 2 668.86662 1335.71869 0.49958 0.00033415 0.645 0.00043142 1.1446 0.00076557 668.8668951364197 75.356 0.24719 75.402 75.288 75.535 0.045967 19 11 2 0 0 0 0.029988 1 41548 41548 55.235 43.74 1 2337500 9595 4431 6644 6778 10989 10989 0.06425617148693163 EPVQLTFALRY 11 Unmodified _EPVQLTFALRY_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MSMS AL20221201_MKP_PDAC_01 4 668.8680419921875 2 668.86662 1335.71869 NaN NaN NaN NaN NaN NaN NaN 87.367 1 81.192 80.692 81.692 -6.1757 0 0 0 1.3857E-17 1 57608 57608 128.57 95.787 1 9596 4431 6644 6778 10990 10990 0.06425617148693163 EPVREPVRPC 10 Unmodified _EPVREPVRPC_ 0 0 0 REV__ENST00000392562.5_1_17:73389792-73400993:-|nuORF REV__ENST00000392562.5_1_17:73389792-73400993:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 591.3089599609375 2 591.308415 1180.60228 NaN NaN NaN NaN NaN NaN NaN 16.97 1 14.383 13.883 14.883 -2.5866 0 0 0 0.96981 1 8833 8833 3.9444 0.3479 1 + 9597 26395 6645 6779 10991 10991 0.019199753771545147 EPVRLAPEREF 11 Unmodified _EPVRLAPEREF_ 0 0 0 nc|ENSG00000143393|Q9UBF8-2|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2623596191406 3 448.241976 1341.7041 0.46916 0.0002103 0.36979 0.00016576 0.83895 0.00037605 448.2420885841756 48.076 0.19709 47.724 47.634 47.831 -0.3526 21 9 3 0 0 0 0.30515 1 25762 25762 3.8459 1.0026 1 3372200 9598 16244 6646 6780 10992 10992 0.04691545000559927 EPVRTLAEHSY 11 Unmodified _EPVRTLAEHSY_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.T551Nfs*9|1|0.14|ENSG00000177311|chr3:141444032-141444033|-/A|frameshift_variant ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.3272094726562 2 651.327859 1300.64116 -0.76665 -0.00049934 0.13619 8.8702E-05 -0.63047 -0.00041064 651.3282891148253 27.438 0.076345 27.438 27.392 27.469 0 6 3 2 0 0 0 0.5551 1 14143 14143 13.615 2.8154 1 1491000 9599 8675 6647 6781 10993 10993 0.002869792125238746 EPVTPANINLY 11 Unmodified _EPVTPANINLY_ 0 0 0 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8226928710938 2 615.821878 1229.6292 0.38902 0.00023956 -0.7324 -0.00045103 -0.34339 -0.00021147 615.8214043155084 63.976 0.30205 63.976 63.824 64.126 0 17 11 2 0 0 0 0.59689 1 35683 35683 11.495 1.4208 1 765570 9600 469 6648 6782 10994 10994 0.02357362469342661 EPVTYFITF 9 Unmodified _EPVTYFITF_ 0 0 0 ENST00000494604.1_1_4:110605598-110605826:+|nuORF;ENSG00000005059|ENST00000394650|MCUB ENST00000494604.1_1_4:110605598-110605826:+|nuORF ENST00000494604.1_1_4:110605598-110605826:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7850952148438 2 558.784233 1115.55391 0.57323 0.00032031 -0.15304 -8.5517E-05 0.42019 0.00023479 558.7839496676071 96.045 0.27606 95.741 95.639 95.915 -0.30473 27 14 2 0 0 0 0.30562 1 52443 52443 16.942 9.0321 1 1262100 9601 296 6649 6783 10995 10995 0.0007580500889616815 EPVTYFITF 9 Unmodified _EPVTYFITF_ 0 0 0 ENST00000494604.1_1_4:110605598-110605826:+|nuORF;ENSG00000005059|ENST00000394650|MCUB ENST00000494604.1_1_4:110605598-110605826:+|nuORF ENST00000494604.1_1_4:110605598-110605826:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7854614257812 2 558.784233 1115.55391 1.3085 0.00073118 0.50415 0.00028171 1.8127 0.0010129 558.7842585111229 100.36 0.16703 94.188 94.103 94.27 -6.1757 17 10 2 0 0 0 0.070838 1 67096 67096 39.957 13.074 1 29820000 9602 296 6649 6783 10996 10996 0.0007580500889616815 EPVWKVLIY 9 Unmodified _EPVWKVLIY_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;ENST00000556413.1_1_14:31097419-31099772:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8314208984375 2 573.831517 1145.64848 0.78063 0.00044795 0.16636 9.546E-05 0.94698 0.00054341 573.8316031131444 80.862 0.34956 80.92 80.762 81.111 0.057587 36 13 3 0 0 0 0.2143 1 44664 44664 21.747 8.2388 1 11926000 9603 1606 6650 6784 10997 10997 0.08148363550913018 EPVWKVLIY 9 Unmodified _EPVWKVLIY_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;ENST00000556413.1_1_14:31097419-31099772:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8316040039062 2 573.831517 1145.64848 1.3966 0.00080139 -0.58704 -0.00033686 0.80952 0.00046453 573.8313262353097 97.728 0.34692 91.552 91.384 91.731 -6.1757 41 22 3 0 0 0 0.10734 1 64701 64701 32.305 12.866 1 45402000 9604 1606 6650 6784 10998 10998 0.08148363550913018 EPWALCWSMT 10 Unmodified _EPWALCWSMT_ 0 0 0 ENST00000559927.1_1_15:63536987-63548731:+|nuORF ENST00000559927.1_1_15:63536987-63548731:+|nuORF ENST00000559927.1_1_15:63536987-63548731:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2640991210938 2 612.264827 1222.5151 -0.57659 -0.00035303 -0.71044 -0.00043498 -1.287 -0.000788 612.2643946669575 30.13 0.3891 30.13 29.994 30.383 0 48 18 4 0 0 0 0.69377 1 15725 15725 3.5965 1.5367 1 11977000 9605 15304 6651 6785 10999 10999 -0.08725566888779213 EPWALCWSMT 10 Unmodified _EPWALCWSMT_ 0 0 0 ENST00000559927.1_1_15:63536987-63548731:+|nuORF ENST00000559927.1_1_15:63536987-63548731:+|nuORF ENST00000559927.1_1_15:63536987-63548731:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.7891845703125 2 612.264827 1222.5151 -0.9661 -0.00059151 -1.1387 -0.00069717 -2.1048 -0.0012887 612.2635771671896 32.662 0.3093 32.662 32.481 32.79 0 35 16 3 0 0 0 0.23227 1 16977 16977 10.824 0 1 6622800 9606 15304 6651 6785 11000 11000 -0.08725566888779213 EPWEFGDII 9 Unmodified _EPWEFGDII_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2651977539062 2 553.263665 1104.51278 0.45023 0.00024909 1.182 0.00065395 1.6322 0.00090304 553.2641836310435 78.381 0.46806 78.381 78.172 78.64 0 45 21 3 0 0 0 0.39863 1 43508 43508 12.532 1.7076 1 1330400 + 9607 16943 6652 6786 11001 11001 -0.03529956030570247 EPWFSTFEH 9 Unmodified _EPWFSTFEH_ 0 0 0 ENSG00000131374|ENST00000696125|TBC1D5;nc|ENSG00000131374|Q92609|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8416748046875 3 393.841701 1178.50327 NaN NaN NaN NaN NaN NaN NaN 17.93 1 17.93 17.43 18.43 0 0 0 0 0.84564 1 8878 8878 1.0715 0.29493 1 9608 4318 6653 6787 11002 11002 -0.07883724316093321 EPWHLDIFEF 10 Unmodified _EPWHLDIFEF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.81689453125 2 666.816596 1331.61864 1.3434 0.00089582 -0.42409 -0.00028279 0.91933 0.00061302 667.3173745744967 100.83 0.089928 94.652 94.611 94.701 -6.1757 12 5 3 0 0 0 0.020813 1 67536 67536 74.929 36.753 1 30121000 9609 7600 6654 6788 11003 11003 -0.03390620185109583 EPWNNLPKY 9 Unmodified _EPWNNLPKY_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7896118164062 2 580.790381 1159.56621 0.36504 0.00021201 0.5934 0.00034464 0.95844 0.00055665 580.7904587289216 53.185 0.28422 52.733 52.594 52.878 -0.45173 25 14 2 0 0 0 0.042911 1 28773 28773 48.346 33.508 1 4961200 9610 10663 6655 6789 11004 11004 -0.0071915852806796465 EPWPENATL 9 Unmodified _EPWPENATL_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7545166015625 2 528.753464 1055.49238 0.71937 0.00038037 4.1138 0.0021752 4.8332 0.0025556 528.756060562391 59.886 0.74128 59.886 59.627 60.368 0 70 33 3 0 0 0 0.07916 1 33613 33613 37.974 14.826 1 10303000 9611 4082 6656 6790 11005 11005 -0.03315126690381476 EPWPENATLY 10 Unmodified _EPWPENATLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.2850952148438 2 610.285128 1218.5557 0.10972 6.696E-05 -0.081078 -4.948E-05 0.028642 1.748E-05 610.2851837055333 65.787 0.58328 65.787 65.447 66.03 0 72 27 3 0 0 0 0.095172 2 36648 36648;36749 65.235 43.488 1 10897000 9612 4082 6657 6791 11006;11007 11006 -0.0448318597314028 EPWPENATLY 10 Unmodified _EPWPENATLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.2870483398438 2 610.285128 1218.5557 0.19941 0.0001217 1.918 0.0011706 2.1175 0.0012923 610.2860477771306 66.42 0.58475 65.937 65.586 66.171 -0.48323 45 30 3 0 0 0 0.2667 1 36237 36237 34.402 11.253 1 3091500 9613 4082 6657 6791 11008 11008 -0.0448318597314028 EPWPENATLY 10 Unmodified _EPWPENATLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.2847900390625 2 610.285128 1218.5557 0.74647 0.00045556 -0.80737 -0.00049272 -0.060894 -3.7163E-05 610.2852422050706 73.173 0.52735 66.997 66.716 67.243 -6.1757 62 25 3 0 0 0 0.022716 3 47965 47729;47842;47965 75.761 51.74 1 43721000 9614 4082 6657 6791 11009;11010;11011 11011 -0.0448318597314028 EPWPENATLY 10 Unmodified _EPWPENATLY_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 610.285128 1218.5557 0.86448 0.00052758 -0.48558 -0.00029634 0.3789 0.00023124 610.2845506273085 66.868 0.27523 66.886 66.772 67.047 0.018028 -0.055636 0.00029113 NaN 75.761 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1795900 9615 4082 6657 6791 -0.0448318597314028 EPWPGQYQF 9 Unmodified _EPWPGQYQF_ 0 0 0 nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1 nc|ENSG00000170266|P16278-3|GLB1 nc|ENSG00000170266|P16278-3|GLB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2637329101562 2 576.261456 1150.50836 0.8505 0.00049011 1.3121 0.00075613 2.1626 0.0012462 576.2623098398419 75.545 0.55078 69.369 69.102 69.652 -6.1757 76 29 3 0 0 0 0.010818 1 49447 49447 78.149 42.105 1 30128000 9616 7965 6658 6792 11012 11012 -0.06087420453491177 EPWPGVIRF 9 Unmodified _EPWPGVIRF_ 0 0 0 ENSG00000212916|ENST00000418460|MAP10 ENSG00000212916|ENST00000418460|MAP10 ENSG00000212916|ENST00000418460|MAP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7982177734375 2 550.798009 1099.58147 NaN NaN NaN NaN NaN NaN NaN 77.04 1 77.09 76.59 77.59 0.05011 0 0 0 0.18753 1 42514 42514 32.305 21.482 1 9617 10416 6659 6793 11013 11013 0.03565753059820054 EPWPNSDPPF 10 Unmodified _EPWPNSDPPF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2634887695312 2 593.264196 1184.51384 0.22684 0.00013458 -0.14495 -8.5992E-05 0.081894 4.8585E-05 593.2638687917045 68.04 0.63675 68.04 67.675 68.312 0 64 30 3 0 0 0 0.60623 3 37937 37750;37833;37937 10.824 4.1008 1 1877700 9618 4412 6660 6794 11014;11015;11016 11016 -0.07103741661671847 EPWPNSDPPF 10 Unmodified _EPWPNSDPPF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2633666992188 2 593.264196 1184.51384 0.56356 0.00033434 -0.74298 -0.00044078 -0.17942 -0.00010645 593.2636161777347 75.479 0.58441 69.303 68.995 69.58 -6.1757 40 31 2 0 0 0 0.38092 1 49514 49514 22.736 13.353 1 11566000 9619 4412 6660 6794 11017 11017 -0.07103741661671847 EPWRTETFC 9 Unmodified _EPWRTETFC_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7241821289062 2 584.758223 1167.50189 -0.43844 -0.00025638 -3.3963 -0.001986 -3.8348 -0.0022424 584.7572088823928 25.851 0.083012 25.851 25.779 25.862 0 5 3 2 0 0 0 0.21185 1 13250 13250 6.2058 0.97511 1 589600 9620 16604 6661 6795 11018 11018 -0.07515681676500208 EPWVHLHYY 9 Unmodified _EPWVHLHYY_ 0 0 0 nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E nc|ENSG00000058600|Q9NVU0-3|POLR3E nc|ENSG00000058600|Q9NVU0-3|POLR3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2019653320312 3 415.201341 1242.58219 0.60177 0.00024986 0.2268 9.4169E-05 0.82858 0.00034403 415.2014935503465 52.222 0.20262 51.788 51.688 51.891 -0.43367 21 9 3 0 0 0 0.25681 1 28201 28201 19.257 15.67 1 2682300 9621 804 6662 6796 11019 11019 -0.029394522911388776 EPYEPISPPQ 10 Unmodified _EPYEPISPPQ_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1875305175781 3 386.188878 1155.5448 -0.44283 -0.00017102 0.00021264 8.212E-08 -0.44262 -0.00017094 386.1888445865426 20.857 1.3489 20.857 20.241 21.59 0 577 187 4 0 0 0 0.66569 1 10903 10903 3.5871 0.74377 1 55780000 9622 5298 6663 6797 11020 11020 -0.02674588347417739 EPYFGSLSAF 10 Unmodified _EPYFGSLSAF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2611083984375 2 559.263665 1116.51278 0.71215 0.00039828 3.0308 0.001695 3.743 0.0020933 559.2680928176372 83.424 0.40652 82.926 82.719 83.125 -0.49751 42 16 4 0 0 0 0.42068 1 45615 45615 20.454 1.1966 1 3617500 9623 4346 6664 6798 11021 11021 -0.040819560305635605 EPYFGSLSAF 10 Unmodified _EPYFGSLSAF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2655639648438 2 559.263665 1116.51278 1.2045 0.00067362 1.0416 0.00058251 2.246 0.0012561 559.2641633752784 90.875 0.49882 84.7 84.56 85.059 -6.1757 55 29 2 0 0 0 0.0020965 2 60189 60052;60189 108 65.755 1 12896000 9624 4346 6664 6798 11022;11023 11023 -0.040819560305635605 EPYFGSLSAF 10 Unmodified _EPYFGSLSAF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 559.263665 1116.51278 0.39379 0.00022023 1.0151 0.00056771 1.4089 0.00078794 559.7657688103483 82.827 0.21627 82.827 82.768 82.984 0 -0.049861 -0.00048836 NaN 20.454 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 423950 9625 4346 6664 6798 -0.040819560305635605 EPYGKIKNY 9 Unmodified _EPYGKIKNY_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000415279.1_1_1:106435599-106436040:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2930908203125 2 556.292756 1110.57096 0.032216 1.7921E-05 2.7404 0.0015245 2.7726 0.0015424 556.2946999601603 22.455 0.28376 22.455 22.245 22.528 0 27 13 3 0 0 0 0.070838 1 11434 11434 39.957 21.811 1 1337500 9626 496 6665 6799 11024 11024 0.02009725614720992 EPYGSQRDIAY 11 Unmodified _EPYGSQRDIAY_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.8040771484375 2 649.804217 1297.59388 1.1724 0.00076184 -0.22873 -0.00014863 0.94369 0.00061321 649.8038943224506 37.376 0.23554 33.093 33.007 33.242 -4.2835 19 13 2 0 0 0 0.051143 1 21944 21944 61.09 28.304 1 4799100 9627 2577 6666 6800 11025 11025 -0.043013000584551264 EPYHERVWG 9 Unmodified _EPYHERVWG_ 0 0 0 REV__ZSCAN9|p.C116Y|1|0.16|ENSG00000137185|chr6:28227431-28227431|G/A|missense_variant REV__ZSCAN9|p.C116Y|1|0.16|ENSG00000137185|chr6:28227431-28227431|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5203857421875 3 391.520962 1171.54106 NaN NaN NaN NaN NaN NaN NaN 16.301 1 16.301 15.801 16.801 0 0 0 0 0.84369 1 7936 7936 1.1933 0.41681 1 + 9628 30145 6667 6801 11026 11026 -0.037852133306159885 EPYINIDNR 9 Unmodified _EPYINIDNR_ 0 0 0 REV__ENSG00000196455|ENST00000356763|PIK3R4 REV__ENSG00000196455|ENST00000356763|PIK3R4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2816772460938 2 567.28292 1132.55129 NaN NaN NaN NaN NaN NaN NaN 84.996 1 84.996 84.496 85.496 0 0 0 0 0.83049 1 47110 47110 3.9444 0.3479 1 + 9629 23831 6668 6802 11027 11027 -0.009686503960438131 EPYIYDYP 8 Unmodified _EPYIYDYP_ 0 0 0 REV__ENSG00000104884|ENST00000391945|ERCC2 REV__ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8275756835938 3 353.827169 1058.45968 0.6143 0.00021736 3.9591 0.0014008 4.5734 0.0016182 354.16442170466723 54.101 0.36849 54.101 53.923 54.291 0 41 16 3 0 0 0 0.6895 1 29977 29977 13.906 3.8321 1 13375000 + 9630 18382 6669 6803 11028 11028 -0.06721333813243291 EPYKVCPIS 9 Unmodified _EPYKVCPIS_ 0 0 0 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 ENSG00000154783|ENST00000285046|FGD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2616577148438 2 518.26261 1034.51067 NaN NaN NaN NaN NaN NaN NaN 85.222 1 84.721 84.221 85.221 -0.5015 0 0 0 0.67877 1 46630 46630 10.074 1.4806 1 9631 6349 6670 6804 11029 11029 -0.0052070804001687065 EPYKYEKV 8 Unmodified _EPYKYEKV_ 0 0 0 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2754516601562 2 528.274032 1054.53351 0.37951 0.00020048 1.5223 0.00080417 1.9018 0.0010047 528.274837643618 88.65 0.63029 88.145 87.825 88.455 -0.50423 43 27 2 0 0 0 0.80143 1 48443 48443 5.7604 0.52976 1 635160 + 9632 20780 6671 6805 11030 11030 0.008426343491009902 EPYLDVCI 8 Unmodified _EPYLDVCI_ 0 0 0 ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF MSMS AL20221201_MKP_PDAC_01 4 476.2306518554688 2 476.228236 950.44192 NaN NaN NaN NaN NaN NaN NaN 99.543 1 93.368 92.868 93.868 -6.1757 0 0 0 0.93587 1 66330 66330 13.508 3.3245 1 9633 2742 6672 6806 11031 11031 -0.03528372339746966 EPYMIPEGVL 10 Unmodified _EPYMIPEGVL_ 0 0 0 REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.788330078125 2 574.288825 1146.5631 0.5878 0.00033756 -0.36247 -0.00020816 0.22533 0.0001294 574.2885334762523 91.094 0.43575 90.6 90.429 90.865 -0.49458 45 20 3 0 0 0 0.66569 1 49743 49743 6.7232 1.9672 1 942200 + 9634 24086 6673 6807 11032 11032 -0.004321696970691846 EPYMPYEF 8 Unmodified _EPYMPYEF_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7955322265625 2 538.225694 1074.43683 0.047619 2.563E-05 -1.8518 -0.00099668 -1.8042 -0.00097105 538.2247241511596 52.288 0.26792 52.288 52.175 52.443 0 19 11 2 0 0 0 8.7369 1 28967 28967 5.7604 0.52976 1 1169700 9635 6165 6674 6808 11033 11033 -0.0974067620236383 EPYPTPVP 8 Unmodified _EPYPTPVP_ 0 0 0 ENSG00000233050|ENST00000437818|DEFB130B;ENSG00000232948|ENST00000400079|DEFB130A ENSG00000233050|ENST00000437818|DEFB130B ENSG00000233050|ENST00000437818|DEFB130B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.45166015625 1 899.450911 898.443634 0.32266 0.00029021 -0.85785 -0.00077159 -0.53519 -0.00048138 899.4498802578552 53.475 0.2657 53.475 53.281 53.547 0 16 11 2 0 0 0 0.21786 1 29617 29617 67.035 3.6416 1 1452700 9636 10629 6675 6809 11034 11034 -0.009649952594713795 EQAEAFTLAY 10 Unmodified _EQAEAFTLAY_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8518371582031 3 381.516995 1141.52915 0.93715 0.00035754 -1.1044 -0.00042136 -0.16728 -6.3819E-05 381.85057427263973 27.208 0.4075 24.171 23.949 24.356 -3.0365 55 20 4 0 0 0 0.40136 1 14995 14995 14.218 0.69951 1 53443000 + 9637 19711 6676 6810 11035 11035 -0.035948748644841544 EQAGPWAWEL 10 Unmodified _EQAGPWAWEL_ 0 0 0 REV__nc|ENSG00000037280|P35916-3|FLT4 REV__nc|ENSG00000037280|P35916-3|FLT4 MSMS AL20221201_MKP_PDAC_01 4 593.7821655273438 2 593.780013 1185.54547 NaN NaN NaN NaN NaN NaN NaN 61.643 1 55.467 54.967 55.967 -6.1757 0 0 0 0.61997 1 39718 39718 20.415 2.2796 1 + 9638 17172 6677 6811 11036 11036 -0.039877489077071004 EQALLWLHVL 10 Unmodified _EQALLWLHVL_ 0 0 0 nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3526611328125 2 611.353148 1220.69174 NaN NaN NaN NaN NaN NaN NaN 55.811 1 55.742 55.242 56.242 -0.068737 0 0 0 0.83398 1 30338 30338 10.824 2.6684 1 9639 4543 6678 6812 11037 11037 0.09022553328168215 EQATREYTLQ 10 Unmodified _EQATREYTLQ_ 0 0 0 nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5383911132812 3 413.53857 1237.59388 -0.067116 -2.7755E-05 0.59111 0.00024445 0.52399 0.00021669 413.53895032377926 19.083 0.13356 19.091 19.031 19.164 0.0078487 11 6 2 0 0 0 0.71042 1 9690 9690 1.7423 0 1 1056100 9640 3922 6679 6813 11038 11038 -0.015413000584885594 EQCHQYMGF 9 Unmodified _EQCHQYMGF_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7225341796875 2 571.723326 1141.4321 NaN NaN NaN NaN NaN NaN NaN 85.204 1 84.702 84.202 85.202 -0.5015 0 0 0 0.84369 1 46620 46620 2.3027 0.24298 1 9641 9778 6680 6814 11039 11039 -0.13295883616774518 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1203002929688 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 108.66 1 102.49 101.99 102.99 -6.1757 0 0 0 0.8622 1 72612 72612 0 0 1 9642 7926 6681 6815 11040 11040 -0.26431996587677986 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1205139160156 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 108.89 1 102.71 102.21 103.21 -6.1757 0 0 0 0.8622 1 72751 72751 0 0 1 9643 7926 6681 6815 11041 11041 -0.26431996587677986 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1197814941406 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 109.33 1 103.16 102.66 103.66 -6.1757 0 0 0 0.8622 1 73021 73021 0 0 1 9644 7926 6681 6815 11042 11042 -0.26431996587677986 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1197204589844 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 109.51 1 103.33 102.83 103.83 -6.1757 0 0 0 0.85852 1 73130 73130 0.45834 0.45834 1 9645 7926 6681 6815 11043 11043 -0.26431996587677986 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1191101074219 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 109.7 1 103.52 103.02 104.02 -6.1757 0 0 0 0.85852 1 73248 73248 0.45834 0.45834 1 9646 7926 6681 6815 11044 11044 -0.26431996587677986 EQDDCCGCC 9 Unmodified _EQDDCCGCC_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MSMS AL20221201_MKP_PDAC_01 4 488.1195068359375 2 488.119188 974.223823 NaN NaN NaN NaN NaN NaN NaN 109.93 1 103.76 103.26 104.26 -6.1757 0 0 0 0.8622 1 73392 73392 0 0 1 9647 7926 6681 6815 11045 11045 -0.26431996587677986 EQDLDKDKF 9 Unmodified _EQDLDKDKF_ 0 0 0 REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1 REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2755126953125 2 569.274761 1136.53497 NaN NaN NaN NaN NaN NaN NaN 60.747 1 60.747 60.247 61.247 0 0 0 0 0.6557 1 33877 33877 10.824 0.75 1 + 9648 24043 6682 6816 11046 11046 -0.02783776352816858 EQDQYFEF 8 Unmodified _EQDQYFEF_ 0 0 0 ENSG00000174684|ENST00000311181|B4GAT1 ENSG00000174684|ENST00000311181|B4GAT1 ENSG00000174684|ENST00000311181|B4GAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2301025390625 2 553.227279 1104.44001 0.45599 0.00025226 -0.99009 -0.00054775 -0.53411 -0.00029548 553.2279139963262 63.785 0.46551 63.785 63.464 63.93 0 32 20 3 0 0 0 0.73714 1 35536 35536 18.135 0 1 2055100 9649 8448 6683 6817 11047 11047 -0.10803709823994723 EQECMLDLES 10 Unmodified _EQECMLDLES_ 0 0 0 ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD MSMS AL20221201_MKP_PDAC_01 4 399.4994812011719 3 399.498506 1195.47369 NaN NaN NaN NaN NaN NaN NaN 93.305 1 87.129 86.629 87.629 -6.1757 0 0 0 0.8671 1 61749 61749 5.4027 0.35519 1 9650 9587 6684 6818 11048 11048 -0.11622792438765828 EQEHISNFL 9 Unmodified _EQEHISNFL_ 0 0 0 REV__nc|ENSG00000136237|Q92565|RAPGEF5 REV__nc|ENSG00000136237|Q92565|RAPGEF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2464599609375 2 558.769645 1115.52474 1.0183 0.000569 -3.0146 -0.0016845 -1.9963 -0.0011155 558.7672811421988 54.243 0.28733 54.243 54.111 54.398 0 19 12 2 0 0 0 0.18882 1 30146 30146 15.847 0 1 2521500 + 9651 20148 6685 6819 11049 11049 -0.028403392873769917 EQEKKVFHLE 10 Unmodified _EQEKKVFHLE_ 0 0 0 REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF REV__ENST00000560493.5_1_15:100105658-100138700:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.843017578125 2 643.840602 1285.66665 NaN NaN NaN NaN NaN NaN NaN 14.631 1 14.639 14.139 15.139 0.0073986 0 0 0 0.99514 1 7260 7260 1.1933 0.735 1 + 9652 25794 6686 6820 11050 11050 0.035244537349626626 EQELIYFTF 9 Unmodified _EQELIYFTF_ 0 0 0 ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2924194335938 2 595.292422 1188.57029 0.40706 0.00024232 -1.7356 -0.0010332 -1.3285 -0.00079086 595.2913180635812 100.54 0.14751 94.362 94.27 94.418 -6.1757 13 8 2 0 0 0 0.023481 1 67272 67272 60.074 38.537 1 39034000 9653 4801 6687 6821 11051 11051 -0.016451138250204167 EQELTYELQ 9 Unmodified _EQELTYELQ_ 0 0 0 ENSG00000183354|ENST00000399933|KIAA2026;KIAA2026|p.G82C|1|0.15|ENSG00000183354|chr9:6007544-6007544|C/A|missense_variant ENSG00000183354|ENST00000399933|KIAA2026 ENSG00000183354|ENST00000399933|KIAA2026 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7752685546875 2 576.774593 1151.53463 0.62917 0.00036289 3.1198 0.0017994 3.7489 0.0021623 576.7765662212146 57.599 0.57389 57.599 57.371 57.944 0 44 26 2 0 0 0 0.23158 1 32125 32125 20.454 1.1966 1 4542400 9654 9142 6688 6822 11052 11052 -0.03507196072678198 EQENDTSGWF 10 Unmodified _EQENDTSGWF_ 0 0 0 ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.3157348632812 2 606.743825 1211.4731 0.37029 0.00022467 -0.33206 -0.00020148 0.038225 2.3193E-05 606.7432993157598 82.803 0.37006 76.627 76.438 76.808 -6.1757 27 20 2 0 0 0 0.23227 1 54312 54312 3.5965 0 1 10537000 9655 9947 6689 6823 11053 11053 -0.12418127771957188 EQEQEQVLY 9 Unmodified _EQEQEQVLY_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;SYNE1|p.S6327I|1|0.07|ENSG00000131018|chr6:152256758-152256758|C/A|missense_variant nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8087158203125 2 583.272218 1164.52988 -0.032157 -1.8756E-05 3.5032 0.0020433 3.4711 0.0020246 583.2736155709473 52.322 0.20053 52.322 52.243 52.443 0 10 8 2 0 0 0 0.19496 1 29003 29003 13.906 0.86358 1 844880 9656 4286 6690 6824 11054 11054 -0.04580080215419002 EQEQEQVLY 9 Unmodified _EQEQEQVLY_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;SYNE1|p.S6327I|1|0.07|ENSG00000131018|chr6:152256758-152256758|C/A|missense_variant nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.272218 1164.52988 0.30243 0.0001764 1.0692 0.00062363 1.3716 0.00080002 583.7742792007504 52.857 0.15758 52.406 52.338 52.496 -0.45173 0.041797 -0.0011987 NaN 13.906 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 860150 9657 4286 6690 6824 -0.04580080215419002 EQERIQAKT 9 Unmodified _EQERIQAKT_ 0 0 0 nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3 nc|ENSG00000148498|Q8TEW0-3|PARD3 nc|ENSG00000148498|Q8TEW0-3|PARD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2002868652344 3 368.199889 1101.57784 -0.56862 -0.00020936 1.2423 0.00045741 0.67368 0.00024805 368.20032798172747 14.621 0.23687 14.59 14.394 14.631 -0.030867 92 60 2 0 0 0 0.42049 1 7098 7098 7.9454 0.90831 1 911760 9658 5941 6691 6825 11055 11055 0.031110384952853565 EQEVNYNII 9 Unmodified _EQEVNYNII_ 0 0 0 REV__ENSG00000164961|ENST00000318410|WASHC5 REV__ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.276611328125 2 561.277303 1120.54005 0.76293 0.00042821 -0.5238 -0.000294 0.23912 0.00013421 561.2768690905432 72.157 0.28846 71.681 71.525 71.813 -0.47609 31 12 3 0 0 0 0.49272 1 39548 39548 7.9102 2.1783 1 6766500 + 9659 21968 6692 6826 11056 11056 -0.015394724901852896 EQEYILLI 8 Unmodified _EQEYILLI_ 0 0 0 REV__ENST00000553274.1_1_14:50175880-50192429:+|nuORF REV__ENST00000553274.1_1_14:50175880-50192429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7845153808594 2 510.784233 1019.55391 0.016992 8.679E-06 0.87169 0.00044524 0.88868 0.00045392 510.7845513519968 78.833 0.5743 78.347 78.111 78.686 -0.48596 75 23 4 0 0 0 0.48669 1 43214 43214 36.044 5.8194 1 11686000 + 9660 28734 6693 6827 11057 11057 0.04491805008922256 EQFCKLSIF 9 Unmodified _EQFCKLSIF_ 0 0 0 ENSG00000214700|ENST00000429849|C12orf71 ENSG00000214700|ENST00000429849|C12orf71 ENSG00000214700|ENST00000429849|C12orf71 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.78564453125 2 557.78371 1113.55287 0.63377 0.00035351 1.196 0.00066708 1.8297 0.0010206 557.7843530195981 69.607 0.35097 69.638 69.495 69.846 0.030914 59 17 5 0 0 0 0.08691 1 38234 38234 36.127 0 1 35377000 9661 10503 6694 6828 11058 11058 0.0006326736834125768 EQFKAIPVEF 10 Unmodified _EQFKAIPVEF_ 0 0 0 REV__ENST00000513286.1_1_4:54441909-54442551:+|nuORF REV__ENST00000513286.1_1_4:54441909-54442551:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3239135742188 2 604.321514 1206.62847 NaN NaN NaN NaN NaN NaN NaN 78.15 1 78.15 77.65 78.65 0 0 0 0 0.96981 1 43436 43436 3.9444 0.66309 1 + 9662 28178 6695 6829 11059 11059 0.03342567820277509 EQFPINEHY 9 Unmodified _EQFPINEHY_ 0 0 0 ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46 ENST00000514536.5_1_4:53464769-53497293:-|nuORF ENST00000514536.5_1_4:53464769-53497293:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8493957519531 3 392.848856 1175.52474 -0.45342 -0.00017812 -0.64546 -0.00025357 -1.0989 -0.00043169 392.84860909228445 29.073 0.46791 29.073 28.943 29.411 0 58 22 5 0 0 0 0.48152 1 15117 15117 5.2969 2.7984 1 35100000 9663 2640 6696 6830 11060 11060 -0.056003392873890334 EQFPSEGQQ 9 Unmodified _EQFPSEGQQ_ 0 0 0 chr2:69815055-69816101|37|115.11|0.43|8.08|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|3 chr2:69815055-69816101|37|115.11|0.43|8.08|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|3 chr2:69815055-69816101|37|115.11|0.43|8.08|+|2|TE_info:MLT2B4,MLT2B4_dup449,ERVL,LTR,donor,-,69814795,69815055|None,ANXA4|3 MSMS AL20221201_MKP_PDAC_01 4 350.4886779785156 3 350.489328 1048.44615 NaN NaN NaN NaN NaN NaN NaN 85.272 1 79.097 78.597 79.597 -6.1757 0 0 0 0.76439 1 56147 56147 4.5289 0 1 9664 108 6697 6831 11061 11061 -0.07613191592463409 EQGAGAWSGE 10 Unmodified _EQGAGAWSGE_ 0 0 0 REV__ENST00000278968.10_3_11:117070126-117070369:+|nuORF REV__ENST00000278968.10_3_11:117070126-117070369:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.20703125 2 496.209421 990.404288 -0.34155 -0.00016948 -1.4729 -0.00073086 -1.8144 -0.00090034 496.2083698546537 25.989 0.32631 25.989 25.799 26.125 0 27 15 2 0 0 0 0.46514 1 13297 13297 18.146 3.5647 1 2199900 + 9665 25185 6698 6832 11062 11062 -0.09129747280985612 EQHEQCQEE 9 Unmodified _EQHEQCQEE_ 0 0 0 REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4 REV__nc|ENSG00000147081|Q5JQC9-2|AKAP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.216796875 2 580.219659 1158.42477 NaN NaN NaN NaN NaN NaN NaN 80.83 1 80.338 79.838 80.838 -0.49247 0 0 0 0.83812 1 44263 44263 0 0 1 + 9666 20862 6699 6833 11063 11063 -0.1481094468349511 EQIIEHFAF 9 Unmodified _EQIIEHFAF_ 0 0 0 REV__nc|ENSG00000136250|P28039-2|AOAH REV__nc|ENSG00000136250|P28039-2|AOAH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8119506835938 2 567.284931 1132.55531 0.58986 0.00033462 0.064052 3.6336E-05 0.65391 0.00037095 567.285732714892 49.099 0.3684 48.728 48.616 48.984 -0.37172 18 17 2 0 0 0 0.18118 1 26450 26450 19.257 7.6167 1 1544400 + 9667 20151 6700 6834 11064 11064 -0.005665609023481011 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5399780273438 3 399.540134 1195.59857 -0.56415 -0.0002254 0.41023 0.0001639 -0.15392 -6.1497E-05 399.5402442773163 18.586 0.2234 18.586 18.492 18.716 0 72 22 4 0 0 0 0.12841 1 9217 9217 27.629 20.152 1 58458000 9668 8367 6701 6835 11065 11065 0.008596288749458836 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.8072509765625 2 598.806562 1195.59857 -0.59301 -0.0003551 0.18032 0.00010798 -0.41269 -0.00024712 598.8066372286844 18.586 0.09234 18.586 18.519 18.611 0 13 6 3 0 0 0 0.15471 1 9245 9245 27.629 15.388 1 854740 9669 8367 6701 6835 11066 11066 0.008596288749458836 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5398254394531 3 399.540134 1195.59857 -0.086909 -3.4724E-05 -0.4314 -0.00017236 -0.51831 -0.00020709 399.5400452088878 18.548 0.17383 18.554 18.45 18.624 0.0060463 14 9 2 0 0 0 0.095405 1 9396 9396 24.991 19.208 1 3343500 9670 8367 6701 6835 11067 11067 0.008596288749458836 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5411682128906 3 399.540134 1195.59857 1.2074 0.00048241 0.11781 4.7069E-05 1.3252 0.00052947 399.5400892356403 19.838 0.48136 17.181 16.955 17.436 -2.6564 107 29 5 0 0 0 0.095405 2 10473 10473;10577 31.268 19.774 1 270100000 9671 8367 6701 6835 11068;11069 11068 0.008596288749458836 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8069458007812 2 598.806562 1195.59857 0.52923 0.00031691 0.35833 0.00021457 0.88757 0.00053148 598.8068985552173 19.831 0.30283 17.175 17.03 17.333 -2.6564 46 18 3 0 0 0 0.011671 2 10491 10491;10600 75.761 37.585 1 9840900 9672 8367 6701 6835 11070;11071 11070 0.008596288749458836 EQIKEYHHL 9 Unmodified _EQIKEYHHL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.540134 1195.59857 -0.52765 -0.00021082 0.19489 7.7865E-05 -0.33277 -0.00013295 399.5403062896311 17.411 0.0081196 17.425 17.42 17.428 0.013865 0.12961 0.00018859 NaN 24.991 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 344790 9673 8367 6701 6835 0.008596288749458836 EQILFQTQHF 10 Unmodified _EQILFQTQHF_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8885192871094 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 27.364 1 27.393 26.893 27.893 0.028664 0 0 0 0.97592 1 14219 14219 1.5923 0.81575 1 + 9674 19478;29616 6702 6836 11072 11072 0.0072018456346540916 EQILPDSP 8 Unmodified _EQILPDSP_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1;nc|ENSG00000106683|P53667-3|LIMK1;ENST00000483414.1_1_7:73511493-73523492:+|nuORF nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7285461425781 2 449.729458 897.444362 0.3307 0.00014872 -0.98427 -0.00044265 -0.65357 -0.00029393 449.72900298238244 62.476 0.21038 62.476 62.4 62.611 0 20 12 2 0 0 0 0.28079 1 34836 34836 57.471 9.1255 1 2897700 9675 2452 6703 6837 11073 11073 -0.008462006104309694 EQIPKKLDQPN 11 Unmodified _EQIPKKLDQPN_ 0 0 0 REV__nc|ENSG00000172955|P28332|ADH6 REV__nc|ENSG00000172955|P28332|ADH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2421569824219 3 437.241865 1308.70376 0.39995 0.00017488 0.49675 0.0002172 0.8967 0.00039208 437.2420867488495 28.219 0.79435 28.249 27.775 28.569 0.029566 82 32 4 0 0 0 0.73237 1 14526 14526 1.2148 0.20126 1 31735000 + 9676 22693 6704 6838 11074 11074 0.06176125280694578 EQIRLLLH 8 Unmodified _EQIRLLLH_ 0 0 0 REV__nc|ENSG00000187098|O75030-2|MITF REV__nc|ENSG00000187098|O75030-2|MITF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.3119506835938 2 511.311284 1020.60801 0.13225 6.7623E-05 0.14031 7.1743E-05 0.27257 0.00013937 511.3114079328053 55.201 0.23232 54.723 54.588 54.82 -0.47798 16 10 2 0 0 0 0.77186 1 29925 29925 10.824 0.75 1 1192300 + 9677 23619 6705 6839 11075 11075 0.09853441951145214 EQIVEHFPF 9 Unmodified _EQIVEHFPF_ 0 0 0 REV__ENSG00000178295|ENST00000381254|GEN1 REV__ENSG00000178295|ENST00000381254|GEN1 MSMS AL20221201_MKP_PDAC_01 4 573.315673828125 2 573.284931 1144.55531 NaN NaN NaN NaN NaN NaN NaN 78.794 1 72.618 72.118 73.118 -6.1757 0 0 0 0.41346 1 51601 51601 19.257 2.3147 1 + 9678 23033 6706 6840 11076 11076 -0.011185609023414145 EQIVHDDSTI 10 Unmodified _EQIVHDDSTI_ 0 0 0 REV__nc|ENSG00000284762|O95263-6|PDE8B REV__nc|ENSG00000284762|O95263-6|PDE8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.780517578125 2 578.777667 1155.54078 0.20486 0.00011857 -0.27748 -0.0001606 -0.072622 -4.2032E-05 578.777853194081 62.195 0.32868 62.195 61.996 62.324 0 40 16 3 0 0 0 0.54684 1 34629 34629 13.906 1.3745 1 6942400 + 9679 30013 6707 6841 11077 11077 -0.030766778411361884 EQKHREERRRR 11 Unmodified _EQKHREERRRR_ 0 0 0 ENST00000584979.1_1_18:14361435-14361894:-|nuORF;ENST00000479127.5_1_21:46378257-46396715:+|nuORF;nc|ENSG00000160256|Q9NSI2-2|SLX9;ENSG00000160256|ENST00000291634|SLX9 ENST00000584979.1_1_18:14361435-14361894:-|nuORF ENST00000584979.1_1_18:14361435-14361894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 790.4349975585938 2 790.435452 1578.85635 NaN NaN NaN NaN NaN NaN NaN 81.696 1 81.696 81.196 82.196 0 0 0 0 0.9435 1 45338 45338 0 0 1 9680 6709 6708 6842 11078 11078 0.09007758520647258 EQKVEVPQMF 10 Unmodified _EQKVEVPQMF_ 0 0 0 SLC9C2|p.R398Q|1|0.24|ENSG00000162753|chr1:173557362-173557362|C/T|missense_variant SLC9C2|p.R398Q|1|0.24|ENSG00000162753|chr1:173557362-173557362|C/T|missense_variant SLC9C2|p.R398Q|1|0.24|ENSG00000162753|chr1:173557362-173557362|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2093811035156 3 412.209396 1233.60636 NaN NaN NaN NaN NaN NaN NaN 44.721 1 44.699 44.199 45.199 -0.022064 0 0 0 0.97855 1 24003 24003 1.4551 0 1 9681 30168 6709 6843 11079 11079 -0.0010997991980730148 EQLDRESMHS 10 Unmodified _EQLDRESMHS_ 0 0 0 REV__ENSG00000100319|ENST00000344318|ZMAT5 REV__ENSG00000100319|ENST00000344318|ZMAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2716674804688 2 616.272226 1230.5299 0.95018 0.00058557 -2.117 -0.0013047 -1.1669 -0.0007191 616.2710656341948 42.671 0.37687 37.987 37.832 38.209 -4.6846 38 24 2 0 0 0 0.65282 1 25761 25761 8.1555 1.0538 1 17874000 + 9682 18042 6710 6844 11080 11080 -0.076144034870822 EQLEHLDF 8 Unmodified _EQLEHLDF_ 0 0 0 nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4 nc|ENSG00000136869|O00206-3|TLR4 nc|ENSG00000136869|O00206-3|TLR4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2822875976562 2 515.745639 1029.47673 0.24691 0.00012734 -1.0542 -0.00054369 -0.80727 -0.00041634 515.7454943219732 39.866 0.41394 39.866 39.616 40.03 0 31 20 2 0 0 0 8.7369 1 21407 21407 11.64 1.4569 1 1023200 9683 4873 6711 6845 11081 11081 -0.036834132074318404 EQLHYVTEL 9 Unmodified _EQLHYVTEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.289794921875 2 566.287671 1130.56079 0.68934 0.00039036 2.5131 0.0014232 3.2025 0.0018135 566.2885358956472 49.522 0.21241 49.522 49.416 49.629 0 19 8 3 0 0 0 0.171 1 27284 27284 34.402 9.0024 1 3789600 9684 6889;9141;10440 6712 6846 11082 11082 0.0007311788947390596 EQLLPGVL 8 Unmodified _EQLLPGVL_ 0 0 0 REV__ENST00000556772.5_1_14:73753841-73753928:-|nuORF REV__ENST00000556772.5_1_14:73753841-73753928:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.761962890625 2 434.760561 867.506569 NaN NaN NaN NaN NaN NaN NaN 76.705 1 70.53 70.03 71.03 -6.1757 0 0 0 0.90769 1 50172 50172 18.135 5.6034 1 + 9685 28782 6713 6847 11083 11083 0.06751570528570028 EQLNASLSF 9 Unmodified _EQLNASLSF_ 0 0 0 REV__ENSG00000147873|ENST00000610521|IFNA5 REV__ENSG00000147873|ENST00000610521|IFNA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2576293945312 2 504.753464 1007.49238 0.7042 0.00035545 0.13015 6.5694E-05 0.83436 0.00042114 504.7539676944783 50.005 0.42439 50.005 49.812 50.236 0 30 19 3 0 0 0 0.18521 1 27676 27676 16.942 0 1 7007000 + 9686 20918 6714 6848 11084 11084 -0.011071266903627475 EQLNIRYP 8 Unmodified _EQLNIRYP_ 0 0 0 ENST00000315677.7_2_18:4151261-4455243:-|nuORF ENST00000315677.7_2_18:4151261-4455243:-|nuORF ENST00000315677.7_2_18:4151261-4455243:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3059692382812 2 516.777274 1031.53999 0.48139 0.00024877 -1.3734 -0.00070975 -0.89202 -0.00046097 517.2780909506431 71.942 0.34232 71.466 71.293 71.636 -0.4761 22 13 2 0 0 0 8.7369 1 39325 39325 24.674 11.166 1 1229300 9687 11733 6715 6849 11085 11085 0.02548572300474916 EQLNIRYP 8 Unmodified _EQLNIRYP_ 0 0 0 ENST00000315677.7_2_18:4151261-4455243:-|nuORF ENST00000315677.7_2_18:4151261-4455243:-|nuORF ENST00000315677.7_2_18:4151261-4455243:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.777274 1031.53999 1.0369 0.00053584 -3.2134 -0.0016606 -2.1765 -0.0011248 517.2766334139443 71.361 0.4854 71.4 71.157 71.642 0.039024 -0.032624 -0.00069089 NaN 24.674 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2348900 9688 11733 6715 6849 0.02548572300474916 EQLQFLQDF 9 Unmodified _EQLQFLQDF_ 0 0 0 REV__ENSG00000126861|ENST00000247271|OMG REV__ENSG00000126861|ENST00000247271|OMG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3243408203125 2 584.287671 1166.56079 -0.15734 -9.1933E-05 2.8204 0.0016479 2.663 0.001556 584.2890724946795 69.555 0.18392 69.076 68.925 69.109 -0.47903 13 7 2 0 0 0 0.18482 1 38005 38005 18.146 2.2992 1 1025600 + 9689 19564 6716 6850 11086 11086 -0.015828821105287716 EQLRIMDSDL 10 Unmodified _EQLRIMDSDL_ 0 0 0 nc|ENSG00000140416|P09493-2|TPM1 nc|ENSG00000140416|P09493-2|TPM1 nc|ENSG00000140416|P09493-2|TPM1 MSMS AL20221201_MKP_PDAC_01 4 407.2057495117188 3 407.204422 1218.59144 NaN NaN NaN NaN NaN NaN NaN 84.095 1 77.919 77.419 78.419 -6.1757 0 0 0 0.8671 1 55309 55309 5.4027 0.99656 1 9690 16233 6717 6851 11087 11087 -0.009114717877764633 EQLRLQEL 8 Unmodified _EQLRLQEL_ 0 0 0 nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF nc|ENSG00000135083|Q8IV13-2|CCNJL nc|ENSG00000135083|Q8IV13-2|CCNJL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7907104492188 2 514.790381 1027.56621 -0.59574 -0.00030668 0.65633 0.00033787 0.060592 3.1192E-05 514.7908048787298 55.499 0.34556 55.499 55.305 55.651 0 51 16 5 0 0 0 0.22971 2 30871 30770;30871 65.235 3.8939 1 32035000 9691 12521 6718 6852 11088;11089 11089 0.05352841471949432 EQLRLQEL 8 Unmodified _EQLRLQEL_ 0 0 0 nc|ENSG00000135083|Q8IV13-2|CCNJL;ENST00000377503.6_1_5:159686777-159766528:-|nuORF nc|ENSG00000135083|Q8IV13-2|CCNJL nc|ENSG00000135083|Q8IV13-2|CCNJL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.789306640625 2 514.790381 1027.56621 -0.34249 -0.00017631 -0.45982 -0.00023671 -0.80231 -0.00041302 514.7901373159483 55.97 0.19941 55.492 55.36 55.559 -0.47798 16 9 2 0 0 0 0.19493 1 30378 30378 71.922 3.8416 1 4166000 9692 12521 6718 6852 11090 11090 0.05352841471949432 EQLYLCYFIN 10 Unmodified _EQLYLCYFIN_ 0 0 0 REV__ENSG00000134452|ENST00000362091|FBH1 REV__ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.3131103515625 2 653.312832 1304.61111 0.03289 2.1487E-05 1.3722 0.00089649 1.4051 0.00091798 653.3136367641027 39.473 0.37209 39.473 39.244 39.616 0 55 17 4 0 0 0 0.54684 1 21231 21231 13.906 1.6654 1 30445000 + 9693 19985 6719 6853 11091 11091 -0.029010957770424284 EQLYLCYFIN 10 Unmodified _EQLYLCYFIN_ 0 0 0 REV__ENSG00000134452|ENST00000362091|FBH1 REV__ENSG00000134452|ENST00000362091|FBH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 653.312832 1304.61111 0.03289 2.1487E-05 1.3722 0.00089649 1.4051 0.00091798 653.3136367641027 39.473 0.37209 39.473 39.244 39.616 0 -0.068083 0.00011088 NaN 13.906 55 17 4 NaN NaN NaN NaN 0 NaN NaN 0 30445000 + 9694 19985 6719 6853 -0.029010957770424284 EQMLQRLC 8 Unmodified _EQMLQRLC_ 0 0 0 nc|ENSG00000186648|Q8ND23-3|CARMIL3;ENST00000559694.5_1_14:24526437-24530034:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3 nc|ENSG00000186648|Q8ND23-3|CARMIL3 nc|ENSG00000186648|Q8ND23-3|CARMIL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7511901855469 2 510.751887 1019.48922 0.32311 0.00016503 -3.357 -0.0017146 -3.0339 -0.0015495 510.7505851125877 52.428 0.21018 51.994 51.891 52.101 -0.43367 16 10 2 0 0 0 0.19792 1 28334 28334 70.716 15.942 1 4584300 9695 9493 6720 6854 11092 11092 -0.01974416340397056 EQMMGPHA 8 Unmodified _EQMMGPHA_ 0 0 0 REV__nc|ENSG00000184730|Q0VD83-2|APOBR REV__nc|ENSG00000184730|Q0VD83-2|APOBR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.689453125 2 450.688755 899.362958 NaN NaN NaN NaN NaN NaN NaN 68.664 1 68.664 68.164 69.164 0 0 0 0 0.97444 1 38270 38270 0.79363 0 1 + 9696 23440 6721 6855 11093 11093 -0.09074922845661604 EQMQLDLSW 9 Unmodified _EQMQLDLSW_ 0 0 0 REV__ENSG00000166664|ENST00000299847|CHRFAM7A REV__ENSG00000166664|ENST00000299847|CHRFAM7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7719116210938 2 575.265881 1148.51721 0.90879 0.0005228 -0.010182 -5.8575E-06 0.89861 0.00051694 575.2653817577151 34.614 0.53171 30.519 30.366 30.898 -4.0951 57 31 3 0 0 0 0.28023 1 20189 20189 18.146 4.2403 1 22518000 + 9697 22138 6722 6856 11094 11094 -0.051108148792991415 EQMRIQSLEKT 11 Unmodified _EQMRIQSLEKT_ 0 0 0 ENSG00000013810|ENST00000313288|TACC3;ENST00000484264.1_1_4:1746256-1746676:+|nuORF ENSG00000013810|ENST00000313288|TACC3 ENSG00000013810|ENST00000313288|TACC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 455.2254333496094 3 454.906376 1361.6973 0.89175 0.00040566 2.7967 0.0012722 3.6885 0.0016779 454.90748872151255 22.169 0.21417 19.435 19.291 19.505 -2.7348 17 11 2 0 0 0 0.30321 1 11879 11879 5.8681 0.82062 1 1443500 9698 482 6723 6857 11095 11095 0.030918640577056067 EQNRPTLLF 9 Unmodified _EQNRPTLLF_ 0 0 0 REV__nc|ENSG00000204444|O95445-2|APOM REV__nc|ENSG00000204444|O95445-2|APOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3063354492188 2 559.303655 1116.59276 0.8645 0.00048352 2.3924 0.0013381 3.2569 0.0018216 559.3051503227879 71.923 0.49096 71.962 71.62 72.111 0.039024 50 23 3 0 0 0 0.14602 1 39562 39562 28.487 1.6032 1 5526000 + 9699 24171 6724 6858 11096 11096 0.03912530363277256 EQNRPTLLF 9 Unmodified _EQNRPTLLF_ 0 0 0 REV__nc|ENSG00000204444|O95445-2|APOM REV__nc|ENSG00000204444|O95445-2|APOM MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.303655 1116.59276 0.8645 0.00048352 2.3924 0.0013381 3.2569 0.0018216 559.3051503227879 71.923 0.49096 71.962 71.62 72.111 0.039024 -0.011701 -0.0004783 NaN 28.487 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5526000 + 9700 24171 6724 6858 0.03912530363277256 EQPETYYKW 9 Unmodified _EQPETYYKW_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7860717773438 2 622.285128 1242.5557 0.16415 0.00010215 -1.5084 -0.00093865 -1.3442 -0.0008365 622.7855115469556 45.504 0.20669 45.504 45.379 45.586 0 27 11 3 0 0 0 0.047788 1 24785 24785 45.7 20.709 1 15600000 9701 7256 6725 6859 11097 11097 -0.05587185973149644 EQPRDFLKL 9 Unmodified _EQPRDFLKL_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.548828125 3 382.548629 1144.62406 -0.0047281 -1.8087E-06 -0.068532 -2.6217E-05 -0.07326 -2.8026E-05 382.54854857157045 39.743 0.30528 39.446 39.264 39.569 -0.29716 34 14 3 0 0 0 0.044011 1 20932 20932 43.982 10.537 1 8940200 + 9702 20217 6726 6860 11098 11098 0.05753103397364612 EQPRDFLKL 9 Unmodified _EQPRDFLKL_ 0 0 0 REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.548629 1144.62406 -0.0047281 -1.8087E-06 -0.068532 -2.6217E-05 -0.07326 -2.8026E-05 382.54854857157045 39.743 0.30528 39.446 39.264 39.569 -0.29716 0.024415 4.8033E-05 NaN 43.982 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 8940200 + 9703 20217 6726 6860 0.05753103397364612 EQPTVPTHY 9 Unmodified _EQPTVPTHY_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7606811523438 2 536.258914 1070.50327 0.1545 8.2854E-05 -0.89237 -0.00047854 -0.73787 -0.00039569 536.2586677354452 45.5 0.28467 45.5 45.379 45.664 0 54 15 5 0 0 0 0.25681 1 24884 24884 19.257 5.3509 1 61963000 + 9704 18791 6727 6861 11099 11099 -0.029157243160852886 EQPVEGLAPP 10 Unmodified _EQPVEGLAPP_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2734375 2 518.769114 1035.52368 0.34645 0.00017973 1.1921 0.00061841 1.5385 0.00079813 518.7695570821622 69.617 0.42971 69.617 69.304 69.734 0 36 19 3 0 0 0 0.22941 1 38650 38650 13.906 5.1606 1 1968200 + 9705 17772 6728 6862 11100 11100 0.007334463437018712 EQPYKWEKF 9 Unmodified _EQPYKWEKF_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8767700195312 3 418.876634 1253.60807 0.82843 0.00034701 -0.38657 -0.00016192 0.44186 0.00018508 418.8769140095925 45.018 0.24133 40.166 39.975 40.216 -4.852 27 15 2 0 0 0 0.11784 1 27537 27537 23.801 8.5526 1 11706000 9706 10421 6729 6863 11101 11101 -0.00858602839548439 EQQERFFMP 9 Unmodified _EQQERFFMP_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ENST00000591857.5_1_17:73953534-73975166:-|nuORF nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2791137695312 2 606.279323 1210.54409 NaN NaN NaN NaN NaN NaN NaN 40.173 1 40.173 39.673 40.673 0 0 0 0 0.50124 1 21578 21578 15.847 3.6065 1 9707 6793 6730 6864 11102 11102 -0.052757062681166644 EQQKDEDDM 9 Unmodified _EQQKDEDDM_ 0 0 0 REV__ENSG00000169891|ENST00000357277|REPS2 REV__ENSG00000169891|ENST00000357277|REPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8161010742188 3 379.817004 1136.42918 -0.040915 -1.554E-05 0.50555 0.00019202 0.46463 0.00017648 379.8168832578892 62.104 0.47578 62.104 61.798 62.274 0 39 22 3 0 0 0 0.58865 1 34627 34627 1.0715 0 1 1098400 + 9708 22432 6731 6865 11103 11103 -0.1335748026060628 EQQKFFERPND 11 Unmodified _EQQKFFERPND_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.896484375 3 479.896757 1436.66844 -0.19436 -9.3271E-05 0.84042 0.00040331 0.64606 0.00031004 479.8973627464757 45.004 0.17093 45.004 44.925 45.095 0 26 8 4 0 0 0 0.70705 1 24494 24494 3.5927 0.96144 1 13108000 + 9709 18888 6732 6866 11104 11104 -0.03242537247092514 EQQKFFERPND 11 Unmodified _EQQKFFERPND_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.8965759277344 3 479.896757 1436.66844 0.087075 4.1787E-05 -0.55573 -0.00026669 -0.46865 -0.0002249 479.89678527058743 45.329 0.11119 45.005 44.948 45.059 -0.32425 11 8 2 0 0 0 0.68282 1 24207 24207 5.8681 1.462 1 22658000 + 9710 18888 6732 6866 11105 11105 -0.03242537247092514 EQQKFFERPND 11 Unmodified _EQQKFFERPND_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 479.896757 1436.66844 -0.19436 -9.3271E-05 0.84042 0.00040331 0.64606 0.00031004 479.8973627464757 45.004 0.17093 45.004 44.925 45.095 0 -0.00044934 0.00050493 NaN 5.8681 26 8 4 NaN NaN NaN NaN 0 NaN NaN 0 13108000 + 9711 18888 6732 6866 -0.03242537247092514 EQQKFFERPND 11 Unmodified _EQQKFFERPND_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 479.896757 1436.66844 0.087075 4.1787E-05 -0.55573 -0.00026669 -0.46865 -0.0002249 479.89678527058743 45.329 0.11119 45.005 44.948 45.059 -0.32425 0.00044934 -0.0015051 NaN 5.8681 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 22658000 + 9712 18888 6732 6866 -0.03242537247092514 EQQLQALF 8 Unmodified _EQQLQALF_ 0 0 0 REV__CATSPERB-ATXN3|4|fusion REV__CATSPERB-ATXN3|4|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7578430175781 2 488.758549 975.502546 0.37297 0.00018229 -0.68365 -0.00033414 -0.31067 -0.00015184 488.7583006597631 67.822 0.35167 67.822 67.656 68.008 0 43 16 4 0 0 0 0.78849 1 37886 37886 9.3474 1.4373 1 4226500 + 9713 16757 6733 6867 11106 11106 0.013814810348549145 EQQQKALEMQ 10 Unmodified _EQQQKALEMQ_ 0 0 0 REV__nc|ENSG00000134532|P35711-4|SOX5 REV__nc|ENSG00000134532|P35711-4|SOX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7990112304688 2 616.80062 1231.58669 -0.18462 -0.00011388 -1.9788 -0.0012205 -2.1634 -0.0013344 616.8000726242046 30.733 0.24454 30.733 30.607 30.852 0 25 11 3 0 0 0 0.5933 1 15969 15969 11.495 1.4208 1 1967900 + 9714 19990 6734 6868 11107 11107 -0.01984355930540005 EQQQWLHAHH 10 Unmodified _EQQQWLHAHH_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1;ENST00000537488.1_1_12:7048306-7050940:+|nuORF ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5421752929688 3 438.542649 1312.60612 0.049392 2.166E-05 -1.7794 -0.00078033 -1.73 -0.00075867 438.54232834503944 54.761 0.29614 54.294 54.124 54.42 -0.46664 55 14 5 0 0 0 0.63399 1 29634 29634 5.4027 1.2132 1 26825000 9715 2813 6735 6869 11108 11108 -0.03768218804748358 EQQRFFVL 8 Unmodified _EQQRFFVL_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1066.4033203125 1 1066.56801 1065.56073 0.50719 0.00054095 0.75674 0.00080711 1.2639 0.0013481 1066.5684442914433 46.898 0.18007 46.561 46.424 46.604 -0.33664 14 8 3 0 0 0 8.7369 1 25131 25131 0.79363 0 1 2651000 + 9716 17379 6736 6870 11109 11109 0.03057162680147485 EQQRIIAIL 9 Unmodified _EQQRIIAIL_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.30810546875 2 542.329673 1082.64479 -0.60228 -0.00032663 -4.1395 -0.002245 -4.7418 -0.0025716 542.3267137340378 101.3 0.085709 101.26 101.22 101.3 -0.04216 4 2 2 0 0 0 0.21798 1 56272 56272 2.3027 0.82083 1 493500 9717 2788 6737 6871 11110 11110 0.10677693777029162 EQQRLAAN 8 Unmodified _EQQRLAAN_ 0 0 0 ENSG00000152990|ENST00000334304|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 MSMS AL20221201_MKP_PDAC_01 4 465.2453002929688 2 465.243598 928.472643 NaN NaN NaN NaN NaN NaN NaN 23.192 1 20.413 19.913 20.913 -2.7784 0 0 0 0.51139 1 12535 12535 39.957 7.1716 1 9718 6226 6738 6872 11111 11111 0.005545420895032294 EQQRQLSSS 9 Unmodified _EQQRQLSSS_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113730719-113733878:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.76318359375 2 531.762352 1061.51015 NaN NaN NaN NaN NaN NaN NaN 16.164 1 16.164 15.664 16.664 0 0 0 0 0.79771 1 7859 7859 6.2058 0 1 9719 9509 6739 6873 11112 11112 -0.01814411435520924 EQRCHECQ 8 Unmodified _EQRCHECQ_ 0 0 0 REV__ENST00000489332.1_1_X:70467340-70473105:-|nuORF REV__ENST00000489332.1_1_X:70467340-70473105:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1032.73193359375 1 1032.39857 1031.3913 0.52932 0.00054646 -1.7416 -0.0017981 -1.2123 -0.0012516 1032.3940854403697 56.561 0.10281 50.584 50.529 50.632 -5.9769 6 5 2 0 0 0 8.7369 1 36087 36087 13.508 0 1 15649000 + 9720 20867 6740 6874 11113 11113 -0.12314224936380924 EQRFRVLWWRR 11 Unmodified _EQRFRVLWWRR_ 0 0 0 ENST00000307340.7_1_1:215963551-215972328:-|nuORF ENST00000307340.7_1_1:215963551-215972328:-|nuORF ENST00000307340.7_1_1:215963551-215972328:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.4571533203125 2 816.455125 1630.8957 NaN NaN NaN NaN NaN NaN NaN 67.192 1 67.21 66.71 67.71 0.018028 0 0 0 0.94184 1 36881 36881 1.1933 0.88631 1 9721 11637 6741 6875 11114 11114 0.10548510542207623 EQRIYAERRGD 11 Unmodified _EQRIYAERRGD_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2320251464844 3 464.904135 1391.69057 0.03953 1.8377E-05 1.6262 0.00075605 1.6658 0.00077442 465.2386077094928 35.086 0.17159 35.113 35.039 35.211 0.027405 9 7 2 0 0 0 0.30485 1 18567 18567 1.6479 0.95022 1 1172700 9722 5932 6742 6876 11115 11115 0.010396872213050301 EQRLWKRKKKK 11 Unmodified _EQRLWKRKKKK_ 0 0 0 REV__ENSG00000187862|ENST00000368236|TTC24 REV__ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 764.9861450195312 2 764.483351 1526.95215 1.65 0.0012614 -0.33421 -0.0002555 1.3158 0.0010059 764.4827875596305 104.22 0.11383 98.044 97.974 98.088 -6.1757 12 7 3 0 0 0 0.7453 1 69813 69813 0 0 1 22120000 + 9723 23670 6743 6877 11116 11116 0.20975138378821612 EQRLWKRKKKK 11 Unmodified _EQRLWKRKKKK_ 0 0 0 REV__ENSG00000187862|ENST00000368236|TTC24 REV__ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.9917907714844 3 509.991326 1526.95215 1.3956 0.00071177 -0.19485 -9.9373E-05 1.2008 0.00061239 509.99112538486 104.93 0.16647 98.756 98.662 98.828 -6.1757 42 12 5 0 0 0 0.7453 1 70210 70210 0 0 1 173330000 + 9724 23670 6743 6877 11117 11117 0.20975138378821612 EQRLWKRKKKK 11 Unmodified _EQRLWKRKKKK_ 0 0 0 REV__ENSG00000187862|ENST00000368236|TTC24 REV__ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.99267578125 3 509.991326 1526.95215 1.3985 0.00071322 -0.46843 -0.0002389 0.93006 0.00047432 510.3251622545728 109.95 1.2079 103.78 102.61 103.82 -6.1757 403 252 2 0 0 0 0.7453 6 72774 72774;72891;73000;73124;73232;73342 0 0 1 6183100 + 9725 23670 6743 6877 11118;11119;11120;11121;11122;11123 11118 0.20975138378821612 EQRLWKRKKKK 11 Unmodified _EQRLWKRKKKK_ 0 0 0 REV__ENSG00000187862|ENST00000368236|TTC24 REV__ENSG00000187862|ENST00000368236|TTC24 MSMS AL20221201_MKP_PDAC_01 4 509.9915771484375 3 509.991326 1526.95215 NaN NaN NaN NaN NaN NaN NaN 108.72 1 102.55 102.05 103.05 -6.1757 0 0 0 0.9435 1 72648 72648 0 0 1 + 9726 23670 6743 6877 11124 11124 0.20975138378821612 EQRMIAHF 8 Unmodified _EQRMIAHF_ 0 0 0 REV__ENSG00000085563|ENST00000622132|ABCB1 REV__ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2533569335938 2 516.258194 1030.50183 1.0834 0.00055929 -1.2065 -0.00062287 -0.12316 -6.3581E-05 516.2568647827135 35.676 0.50153 31.484 31.318 31.82 -4.1928 45 31 2 0 0 0 0.48669 1 20682 20682 36.044 12.896 1 13869000 + 9727 17754 6744 6878 11125 11125 -0.01219636885844011 EQRQNYNPE 9 Unmodified _EQRQNYNPE_ 0 0 0 REV__ENSG00000197168|ENST00000684899|NEK5 REV__ENSG00000197168|ENST00000684899|NEK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.267333984375 2 589.265259 1176.51596 NaN NaN NaN NaN NaN NaN NaN 32.522 1 32.522 32.022 33.022 0 0 0 0 0.46232 1 16995 16995 17.113 1.2657 1 + 9728 23903 6745 6879 11126 11126 -0.06523312923877711 EQRRLWRW 8 Unmodified _EQRRLWRW_ 0 0 0 ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF ENST00000494373.1_1_2:54014190-54014463:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1229.862426757812 1 1229.66503 1228.65776 0.22358 0.00027493 -1.4252 -0.0017526 -1.2017 -0.0014776 1230.6633449251663 48.553 0.076618 48.181 48.123 48.2 -0.37172 6 3 2 0 0 0 0.81007 1 26052 26052 0.6015 0.14316 1 2417300 9729 14331 6746 6880 11127 11127 0.052575696797930505 EQSIYYNL 8 Unmodified _EQSIYYNL_ 0 0 0 REV__ENSG00000111863|ENST00000414691|ADTRP REV__ENSG00000111863|ENST00000414691|ADTRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2484130859375 2 515.248015 1028.48148 0.58705 0.00030248 -0.28868 -0.00014874 0.29837 0.00015374 515.2480149595434 49.361 0.52092 49.361 49.174 49.695 0 62 22 4 0 0 0 0.63229 1 27245 27245 23.148 0 1 24519000 + 9730 18774 6747 6881 11128 11128 -0.03162529064661612 EQSKEIKDVCL 11 Unmodified _EQSKEIKDVCL_ 0 0 0 REV__ENSG00000126351|ENST00000450525|THRA REV__ENSG00000126351|ENST00000450525|THRA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 646.8191528320312 2 646.331753 1290.64895 1.1184 0.00072285 1.9471 0.0012585 3.0655 0.0019813 646.3326589768708 96.007 0.19368 89.831 89.714 89.907 -6.1757 25 11 3 0 0 0 0.28226 1 63549 63549 8.1555 0 1 33948000 + 9731 19544 6748 6882 11129 11129 0.015253704178121552 EQSLLRRE 8 Unmodified _EQSLLRRE_ 0 0 0 REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1 REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.248779296875 2 515.78563 1029.55671 0.92263 0.00047588 3.3183 0.0017115 4.2409 0.0021874 515.7872646194337 57.264 0.26197 51.236 51.181 51.443 -6.0275 18 13 2 0 0 0 8.7369 1 36620 36620 10.824 0 1 18073000 + 9732 23914 6749 6883 11130 11130 0.04311073186431713 EQSSGMPRE 9 Unmodified _EQSSGMPRE_ 0 0 0 REV__ENSG00000162571|ENST00000379289|TTLL10 REV__ENSG00000162571|ENST00000379289|TTLL10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3153381347656 2 510.724381 1019.43421 0.52325 0.00026724 -2.5307 -0.0012925 -2.0075 -0.0010253 510.72292441945694 75.566 0.18913 75.089 74.98 75.169 -0.47714 17 9 3 0 0 0 0.21858 1 41313 41313 1.4819 0.68827 1 535340 + 9733 21658 6750 6884 11131 11131 -0.07473131607309824 EQTPFYHLF 9 Unmodified _EQTPFYHLF_ 0 0 0 nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3 nc|ENSG00000156219|Q13508-2|ART3 nc|ENSG00000156219|Q13508-2|ART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2847900390625 2 591.284931 1180.55531 0.72107 0.00042636 0.20367 0.00012043 0.92475 0.00054679 591.2846863035361 74.214 0.40506 73.738 73.549 73.954 -0.47588 23 16 2 0 0 0 0.078417 1 40607 40607 38.151 21.209 1 1255200 9734 6439 6751 6885 11132 11132 -0.02774560902344092 EQTPFYHLF 9 Unmodified _EQTPFYHLF_ 0 0 0 nc|ENSG00000156219|Q13508-2|ART3;ENST00000513494.5_1_4:76997042-77020397:+|nuORF;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3 nc|ENSG00000156219|Q13508-2|ART3 nc|ENSG00000156219|Q13508-2|ART3 MSMS AL20221201_MKP_PDAC_01 4 591.2847290039062 2 591.284931 1180.55531 NaN NaN NaN NaN NaN NaN NaN 84.711 1 78.535 78.035 79.035 -6.1757 0 0 0 0.70111 1 55750 55750 9.3474 0 1 9735 6439 6751 6885 11133 11133 -0.02774560902344092 EQVIFVQRS 9 Unmodified _EQVIFVQRS_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.801513671875 2 553.303655 1104.59276 1.4228 0.00078723 -0.33724 -0.0001866 1.0855 0.00060063 553.3036558973278 64.353 0.76009 58.178 57.955 58.715 -6.1757 59 41 2 0 0 0 0.094631 1 41699 41699 32.305 0 1 29232000 + 9736 18686 6752 6886 11134 11134 0.04464530363270569 EQVVVRSF 8 Unmodified _EQVVVRSF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.2262268066406 2 482.266542 962.51853 0.82311 0.00039696 -3.4994 -0.0016876 -2.6763 -0.0012907 482.26452694683826 42.255 0.26156 37.571 37.46 37.721 -4.6846 25 16 2 0 0 0 8.7369 1 25547 25547 26.884 2.2098 1 8130800 9737 1776 6753 6887 11135 11135 0.03577187271764615 EQWEDFCS 8 Unmodified _EQWEDFCS_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1043.879638671875 1 1043.37749 1042.37021 0.75004 0.00078257 0.075273 7.8538E-05 0.82531 0.00086111 1043.3805321252187 50.523 0.11995 50.109 50.012 50.132 -0.41351 6 5 2 0 0 0 8.7369 1 27156 27156 5.2307 0 1 2457500 9738 8106 6754 6888 11136 11136 -0.14927911764266355 EQWKELKATY 10 Unmodified _EQWKELKATY_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5594177246094 3 432.559194 1294.65575 1.2059 0.00052164 -0.74902 -0.000324 0.45691 0.00019764 432.5592310606881 40.787 0.33436 36.258 36.097 36.432 -4.5294 27 20 2 0 0 0 0.55245 1 24369 24369 8.7518 2.5599 1 8959900 9739 3669 6755 6889 11137 11137 0.020210513606571112 EQWLEEDEDKY 11 Unmodified _EQWLEEDEDKY_ 0 0 0 REV__nc|ENSG00000133704|O15397-2|IPO8 REV__nc|ENSG00000133704|O15397-2|IPO8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.8173217773438 2 742.314811 1482.61507 0.47719 0.00035423 2.5948 0.0019261 3.072 0.0022804 742.317488153777 73.298 0.36829 72.822 72.583 72.952 -0.47588 22 16 2 0 0 0 0.30586 1 40140 40140 0.96228 0 1 587390 + 9740 19931 6756 6890 11138 11138 -0.1069337954029379 EQYNIDGFT 9 Unmodified _EQYNIDGFT_ 0 0 0 REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.740478515625 2 543.740554 1085.46655 NaN NaN NaN NaN NaN NaN NaN 58.538 1 52.463 51.963 52.963 -6.0745 0 0 0 0.065563 1 37513 37513 52.268 0.63854 1 + 9741 18636 6757 6891 11139 11139 -0.07276020932658867 EQYNRYQQY 9 Unmodified _EQYNRYQQY_ 0 0 0 nc|ENSG00000185345|O60260-4|PRKN;nc|ENSG00000185345|O60260-6|PRKN;nc|ENSG00000185345|O60260-5|PRKN;nc|ENSG00000185345|O60260-2|PRKN;ENSG00000185345|ENST00000366898|PRKN nc|ENSG00000185345|O60260-4|PRKN nc|ENSG00000185345|O60260-4|PRKN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.351318359375 2 646.288734 1290.56291 0.010321 6.6701E-06 -0.99634 -0.00064393 -0.98602 -0.00063726 646.2885799136182 65.94 0.24634 65.94 65.845 66.091 0 19 12 2 0 0 0 0.209 1 36825 36825 7.2892 0.56607 1 1320800 9742 9365 6758 6892 11140 11140 -0.07074453372706557 ERCSDGWGF 9 Unmodified _ERCSDGWGF_ 0 0 0 CON__Q3SZV7 CON__Q3SZV7 CON__Q3SZV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7144165039062 2 528.713816 1055.41308 0.36852 0.00019484 1.1321 0.00059854 1.5006 0.00079339 528.7142763718141 64.205 0.37085 64.205 63.974 64.345 0 41 15 4 0 0 0 0.55144 1 35770 35770 4.3292 1.44 1 3419900 + 9743 202 6759 6893 11141 11141 -0.11241096916182869 ERCWQYARRE 10 Unmodified _ERCWQYARRE_ 0 0 0 REV__ENST00000481673.5_1_22:51020665-51021234:-|nuORF REV__ENST00000481673.5_1_22:51020665-51021234:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2215881347656 3 466.22281 1395.6466 0.5828 0.00027172 -0.02039 -9.5064E-06 0.56241 0.00026221 466.2227243863119 72.897 0.31161 72.421 72.295 72.606 -0.47588 31 13 3 0 0 0 0.72464 1 39971 39971 0.15932 0 1 1106400 + 9744 18037 6760 6894 11142 11142 -0.03539620476703931 ERDFIRITI 9 Unmodified _ERDFIRITI_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8324584960938 2 581.83258 1161.65061 0.5478 0.00031873 -0.8551 -0.00049752 -0.3073 -0.0001788 581.8323404203217 46.536 0.29425 46.199 46.073 46.367 -0.33665 25 14 2 0 0 0 0.51218 1 24918 24918 6.7232 0.99131 1 4324300 + 9745 29841 6761 6895 11143 11143 0.0762479228869779 ERDIILQC 8 Unmodified _ERDIILQC_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MSMS AL20221201_MKP_PDAC_01 4 495.2582702636719 2 495.257859 988.501166 NaN NaN NaN NaN NaN NaN NaN 72.626 1 66.45 65.95 66.95 -6.1757 0 0 0 0.85975 1 47510 47510 20.454 2.3073 1 9746 4794 6762 6896 11144 11144 0.006455236744500326 ERDIISAF 8 Unmodified _ERDIISAF_ 0 0 0 ENST00000485726.1_1_7:103844615-103848288:-|nuORF ENST00000485726.1_1_7:103844615-103848288:-|nuORF ENST00000485726.1_1_7:103844615-103848288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7507629394531 2 475.750724 949.486896 0.68083 0.00032391 0.33553 0.00015963 1.0164 0.00048354 475.75094773624954 77.512 0.58477 71.336 71.1 71.684 -6.1757 44 33 2 0 0 0 0.40035 1 50816 50816 44.407 0.54872 1 10995000 9747 14171 6763 6897 11145 11145 0.010131945178045498 ERDLFSSMTC 10 Unmodified _ERDLFSSMTC_ 0 0 0 REV__ENSG00000175065|ENST00000308128|DSG4 REV__ENSG00000175065|ENST00000308128|DSG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7570190429688 2 594.754824 1187.49509 0.54108 0.00032181 0.84929 0.00050512 1.3904 0.00082693 594.755775495319 46.004 0.24868 46.004 45.882 46.131 0 14 11 2 0 0 0 0.65773 1 25145 25145 7.609 0 1 2646000 + 9748 22835 6764 6898 11146 11146 -0.09115362619377265 ERDLTDIYLL 10 Unmodified _ERDLTDIYLL_ 0 0 0 ENSG00000010626|ENST00000443597|LRRC23;nc|ENSG00000010626|Q53EV4-2|LRRC23 ENSG00000010626|ENST00000443597|LRRC23 ENSG00000010626|ENST00000443597|LRRC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.8932189941406 3 417.559082 1249.65542 -0.0045751 -1.9104E-06 -0.24774 -0.00010344 -0.25231 -0.00010535 417.5592670842174 38.859 0.17554 38.572 38.454 38.63 -0.28687 19 7 3 0 0 0 0.68371 1 20460 20460 4.7159 0 1 1409900 9749 425 6765 6899 11147 11147 0.040576316407850754 ERDNCQYVYNV 11 Unmodified _ERDNCQYVYNV_ 0 0 0 CON__Q28194;ENSG00000137801|ENST00000260356|THBS1;nc|ENSG00000137801|P07996-2|THBS1 CON__Q28194 CON__Q28194 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2075805664062 3 468.206714 1401.59831 0.13594 6.3649E-05 0.19527 9.1425E-05 0.33121 0.00015507 468.2065786092415 16.575 0.248 14.018 13.963 14.211 -2.557 51 38 2 0 0 0 0.73115 1 8585 8585 0.45452 0 1 4029300 + 9750 189 6766 6900 11148 11148 -0.086421589072188 ERDPFAPPAAE 11 Unmodified _ERDPFAPPAAE_ 0 0 0 REV__ENST00000404801.1_1_19:35454807-35454945:-|nuORF REV__ENST00000404801.1_1_19:35454807-35454945:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5299682617188 3 400.527894 1198.56185 1.0445 0.00041836 -0.96887 -0.00038806 0.075646 3.0298E-05 400.52804096491354 54.431 0.65688 48.566 48.32 48.977 -5.8653 100 40 4 0 0 0 0.65108 1 34712 34712 4.4062 1.5629 1 75631000 + 9751 26641 6767 6901 11149 11149 -0.029486677416116436 ERDQELEAL 9 Unmodified _ERDQELEAL_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2757568359375 2 551.772385 1101.53022 0.61822 0.00034111 3.4757 0.0019178 4.0939 0.0022589 551.7738858304141 74.603 0.22108 74.603 74.472 74.693 0 15 9 2 0 0 0 0.36964 1 41505 41505 13.906 3.0821 1 726960 9752 3920 6768 6902 11150 11150 -0.016486604955616713 ERDWFPDQGYR 11 Unmodified _ERDWFPDQGYR_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.8334350585938 2 734.83384 1467.65313 -0.52668 -0.00038702 -0.74936 -0.00055065 -1.276 -0.00093768 734.8332293036764 41.557 0.48153 41.557 41.344 41.825 0 91 24 5 0 0 0 0.66968 1 22350 22350 7.1017 1.8048 1 144500000 9753 3315 6769 6903 11151 11151 -0.06199404044309631 EREAALND 8 Unmodified _EREAALND_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-2|FMN1 ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MSMS AL20221201_MKP_PDAC_01 4 459.2206115722656 2 459.219788 916.425024 NaN NaN NaN NaN NaN NaN NaN 47.266 1 42.185 41.685 42.685 -5.0805 0 0 0 0.9489 1 29319 29319 10.824 1.4408 1 9754 10745 6770 6904 11152 11152 -0.03653156901339116 EREHLLLYLTF 11 Unmodified _EREHLLLYLTF_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.934326171875 3 478.59776 1432.77145 1.3635 0.00065258 3.2754 0.0015676 4.639 0.0022202 478.599372186366 88.003 0.13971 81.827 81.71 81.85 -6.1757 10 7 2 0 0 0 0.62603 1 58017 58017 10.016 2.9792 1 12503000 + 9755 23020 6771 6905 11153 11153 0.07237575211524927 EREIERLSV 9 Unmodified _EREIERLSV_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135;ENST00000515081.1_1_4:56820464-56832049:+|nuORF ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.8787841796875 3 377.543655 1129.60914 0.67525 0.00025494 0.088015 3.323E-05 0.76326 0.00028816 377.5430595774102 16.576 0.35274 14.019 13.802 14.155 -2.557 78 51 3 0 0 0 0.20572 1 8636 8636 1.9064 0 1 3353700 9756 8459 6772 6906 11154 11154 0.049516115293727125 EREISTMRH 9 Unmodified _EREISTMRH_ 0 0 0 REV__nc|ENSG00000171634|Q12830-4|BPTF REV__nc|ENSG00000171634|Q12830-4|BPTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7871704101562 2 579.787847 1157.56114 0.68315 0.00039608 -1.5267 -0.00088518 -0.84358 -0.0004891 579.7868682433128 53.931 0.23481 53.931 53.797 54.032 0 26 10 3 0 0 0 0.34134 1 29901 29901 15.248 5.8654 1 3632600 + 9757 22585 6773 6907 11155 11155 -0.011337856623185871 EREISTMRH 9 Unmodified _EREISTMRH_ 0 0 0 REV__nc|ENSG00000171634|Q12830-4|BPTF REV__nc|ENSG00000171634|Q12830-4|BPTF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 579.787847 1157.56114 0.68315 0.00039608 -1.5267 -0.00088518 -0.84358 -0.0004891 579.7868682433128 53.931 0.23481 53.931 53.797 54.032 0 0 0 NaN 15.248 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3632600 + 9758 22585 6773 6907 -0.011337856623185871 ERENLRIAL 9 Unmodified _ERENLRIAL_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H nc|ENSG00000206341|P01893|HLA-H nc|ENSG00000206341|P01893|HLA-H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3223266601562 2 557.32238 1112.63021 0.66756 0.00037205 -0.019175 -1.0687E-05 0.64838 0.00036136 557.3225480147794 49.246 0.21309 49.246 49.083 49.296 0 14 9 2 0 0 0 0.43463 1 27102 27102 10.824 0 1 1965100 9759 16517 6774 6908 11156 11156 0.07839621628863824 EREREHEREND 11 Unmodified _EREREHEREND_ 0 0 0 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 REV__nc|ENSG00000198300|Q9GZU2-2|PEG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 749.5134887695312 2 749.835099 1497.65565 NaN NaN NaN NaN NaN NaN NaN 104.47 1 104.42 103.92 104.92 -0.048737 0 0 0 0.9435 1 58003 58003 0 0 1 + 9760 24011 6775 6909 11157 11157 -0.07327600377266208 ERERERWRWA 10 Unmodified _ERERERWRWA_ 0 0 0 ENST00000465139.6_1_15:69113062-69113137:-|nuORF ENST00000465139.6_1_15:69113062-69113137:-|nuORF ENST00000465139.6_1_15:69113062-69113137:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 737.3777465820312 2 737.37654 1472.73853 NaN NaN NaN NaN NaN NaN NaN 39.546 1 39.558 39.058 40.058 0.011452 0 0 0 1.0024 1 21066 21066 0.40072 0.050084 1 9761 13731 6776 6910 11158 11158 0.021068059320441535 ERERYRREREE 11 Unmodified _ERERYRREREE_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.3812866210938 2 804.403483 1606.79241 NaN NaN NaN NaN NaN NaN NaN 73.45 1 73.45 72.95 73.95 0 0 0 0 0.94184 1 40891 40891 1.1933 0.88631 1 + 9762 18888 6777 6911 11159 11159 0.013289335730632956 ERFALKILLDR 11 Unmodified _ERFALKILLDR_ 0 0 0 ENST00000546394.1_1_12:112280306-112308075:+|nuORF;ENSG00000089022|ENST00000550735|MAPKAPK5;nc|ENSG00000089022|Q8IW41|MAPKAPK5 ENST00000546394.1_1_12:112280306-112308075:+|nuORF ENST00000546394.1_1_12:112280306-112308075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.6154479980469 3 458.613633 1372.81907 0.76985 0.00035306 2.3641 0.0010842 3.134 0.0014373 458.61498604428783 70.265 0.34974 70.3 70.153 70.503 0.035515 35 16 3 0 0 0 0.70711 1 38687 38687 1.6479 0 1 4925700 9763 1508 6778 6912 11160 11160 0.14757274202338522 ERFCLRHRSS 10 Unmodified _ERFCLRHRSS_ 0 0 0 ENST00000483911.1_1_2:219748908-219754805:+|nuORF ENST00000483911.1_1_2:219748908-219754805:+|nuORF ENST00000483911.1_1_2:219748908-219754805:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8883666992188 3 430.88765 1289.64112 NaN NaN NaN NaN NaN NaN NaN 109.01 1 102.83 102.33 103.33 -6.1757 0 0 0 0.99248 1 72826 72826 0.62683 0 1 9764 14142 6779 6913 11161 11161 0.007887007315275696 ERFLTEILYF 10 Unmodified _ERFLTEILYF_ 0 0 0 ENST00000478414.1_1_7:107543952-107546123:+|nuORF ENST00000478414.1_1_7:107543952-107546123:+|nuORF ENST00000478414.1_1_7:107543952-107546123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2414245605469 3 444.239573 1329.69689 1.1078 0.00049214 -3.3566 -0.0014911 -2.2487 -0.00099897 444.2393967394541 57.69 0.61479 57.624 57.14 57.755 -0.066036 51 30 3 0 0 0 0.69917 1 31288 31288 1.4551 0 1 6781800 9765 14018 6780 6914 11162 11162 0.045228124001369 ERFPNFQNV 9 Unmodified _ERFPNFQNV_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5270690917969 3 384.192845 1149.55671 0.9075 0.00034865 -0.62789 -0.00024123 0.27961 0.00010742 384.1925095788366 17.659 0.23705 15.072 14.971 15.208 -2.5866 84 34 3 0 0 0 0.30202 1 9226 9226 16.566 11.669 1 7465200 9766 7434 6781 6915 11163 11163 -0.01208926813569633 ERFRKFQF 8 Unmodified _ERFRKFQF_ 0 0 0 REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5451049804688 3 386.545331 1156.61416 1.9945 0.00077096 -2.2602 -0.00087368 -0.26572 -0.00010271 386.54435657935767 94.904 0.42309 94.919 94.643 95.066 0.014244 24 15 2 0 0 0 0.80992 1 52776 52776 0.40072 0.16487 1 2591300 + 9767 27111 6782 6916 11164 11164 0.04211960182669827 ERFRTTMLQD 10 Unmodified _ERFRTTMLQD_ 0 0 0 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 MSMS AL20221201_MKP_PDAC_01 4 432.88525390625 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 25.954 1 23.003 22.503 23.503 -2.9511 0 0 0 0.90015 1 14248 14248 7.9454 0.46833 1 9768 3175 6783 6917 11165 11165 -0.006769608023205365 ERFVHCPARF 10 Unmodified _ERFVHCPARF_ 0 0 0 ENST00000319540.8_1_4:83551356-83551434:-|nuORF ENST00000319540.8_1_4:83551356-83551434:-|nuORF ENST00000319540.8_1_4:83551356-83551434:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2140197753906 3 421.213475 1260.6186 0.15073 6.3491E-05 0.1631 6.8701E-05 0.31384 0.00013219 421.21364066242023 75.878 0.21765 75.926 75.773 75.99 0.047943 14 9 2 0 0 0 0.46514 1 41861 41861 26.021 17.044 1 3391500 9769 11758 6784 6918 11166 11166 -0.0012889866609384626 ERGESTYQWCI 11 Unmodified _ERGESTYQWCI_ 0 0 0 REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1 REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.87158203125 3 457.871443 1370.5925 0.52228 0.00023914 -0.50919 -0.00023314 0.013087 5.9924E-06 457.87126210937635 27.343 0.41364 24.306 24.082 24.496 -3.0365 46 20 3 0 0 0 0.65846 1 15076 15076 4.1166 0 1 62809000 + 9770 19191 6785 6919 11167 11167 -0.07797257418860681 ERGGSDHERR 10 Unmodified _ERGGSDHERR_ 0 0 0 REV__ENSG00000074855|ENST00000159087|ANO8 REV__ENSG00000074855|ENST00000159087|ANO8 MSMS AL20221201_MKP_PDAC_01 4 399.7578125 3 400.193908 1197.55989 NaN NaN NaN NaN NaN NaN NaN 12.059 1 9.5772 9.0772 10.077 -2.482 0 0 0 0.97592 1 6082 6082 1.5923 0.48253 1 + 9771 17560 6786 6920 11168 11168 -0.030982837068677327 ERGLRGCF 8 Unmodified _ERGLRGCF_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.236328125 2 469.237261 936.45997 0.77452 0.00036344 -0.74589 -0.00035 0.028631 1.3435E-05 469.2366977723119 35.163 0.32597 31.068 30.882 31.208 -4.0951 33 18 2 0 0 0 0.40035 1 20300 20300 44.407 12.29 1 25666000 9772 4655 6787 6921 11169 11169 -0.010801925743635366 ERGSAYVD 8 Unmodified _ERGSAYVD_ 0 0 0 REV__L1MB8_dup13307|chr15:58862252-58862776:+|1.077679791469789|0.2197036870405345|2.29|176.0|13|2|sense REV__L1MB8_dup13307|chr15:58862252-58862776:+|1.077679791469789|0.2197036870405345|2.29|176.0|13|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.4136352539062 1 896.410837 895.40356 1.2167 0.0010907 0.96111 0.00086155 2.1778 0.0019522 896.4114115180879 103.77 0.063141 97.596 97.553 97.617 -6.1757 20 10 3 0 0 0 0.80311 1 69532 69532 4.756 1.4747 1 28036000 + 9773 29401 6788 6922 11170 11170 -0.04832541930056777 ERGVGKAALCR 11 Unmodified _ERGVGKAALCR_ 0 0 0 REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5519714355469 3 387.216997 1158.62916 0.51446 0.00019921 -0.075932 -2.9402E-05 0.43853 0.0001698 387.55153089404666 23.237 0.57149 20.459 20.203 20.774 -2.7784 152 44 4 0 0 0 0.63534 1 12452 12452 5.1984 0 1 190200000 + 9774 24992 6789 6923 11171 11171 0.0561908398833566 ERGWLAQHY 9 Unmodified _ERGWLAQHY_ 0 0 0 REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2872314453125 2 580.285797 1158.55704 0.14946 8.6731E-05 2.1749 0.001262 2.3243 0.0013488 580.2869760085829 65.178 0.19492 65.178 65.052 65.247 0 13 7 3 0 0 0 0.59218 1 36382 36382 1.8442 0 1 537950 + 9775 27016 6790 6924 11172 11172 -0.01589507093717657 ERGWLAQHY 9 Unmodified _ERGWLAQHY_ 0 0 0 REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 580.285797 1158.55704 0.14946 8.6731E-05 2.1749 0.001262 2.3243 0.0013488 580.2869760085829 65.178 0.19492 65.178 65.052 65.247 0 0 0 NaN 1.8442 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 537950 + 9776 27016 6790 6924 -0.01589507093717657 ERHEWSPFMN 10 Unmodified _ERHEWSPFMN_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.8653259277344 3 444.864511 1331.5717 1.3367 0.00059465 0.73439 0.0003267 2.0711 0.00092135 444.8649952560145 21.307 0.24604 18.572 18.43 18.676 -2.7348 45 21 3 0 0 0 0.66229 1 11381 11381 4.1166 0 1 13542000 + 9777 29885 6791 6925 11173 11173 -0.0808180300789445 ERHLAPSL 8 Unmodified _ERHLAPSL_ 0 0 0 REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7588195800781 2 461.758884 921.503215 -0.21376 -9.8707E-05 -0.39607 -0.00018289 -0.60983 -0.0002816 461.75875673119873 27.964 0.22996 27.964 27.804 28.034 0 23 12 3 0 0 0 0.3408 1 14409 14409 50.855 0 1 5012400 + 9778 28965 6792 6926 11174 11174 0.03932320474552853 ERHLAPSL 8 Unmodified _ERHLAPSL_ 0 0 0 REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF REV__ENST00000570196.1_1_16:81957101-81962369:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.758544921875 2 461.758884 921.503215 0.89792 0.00041462 -0.10957 -5.0593E-05 0.78835 0.00036403 461.7586779477656 31.014 0.27331 27.517 27.413 27.686 -3.497 13 12 2 0 0 0 0.26159 1 17553 17553 60.39 0 1 21412000 + 9779 28965 6792 6926 11175 11175 0.03932320474552853 ERIHLRRLLLL 11 Unmodified _ERIHLRRLLLL_ 0 0 0 ENST00000481816.5_3_3:119298332-119299463:+|nuORF ENST00000481816.5_3_3:119298332-119299463:+|nuORF ENST00000481816.5_3_3:119298332-119299463:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 477.7771301269531 3 477.980539 1430.91979 NaN NaN NaN NaN NaN NaN NaN 18.865 1 16.244 15.744 16.744 -2.6215 0 0 0 0.94337 1 9961 9961 0.094841 0 1 9780 14090 6793 6927 11176 11176 0.22156350975910755 ERINSLLLTW 10 Unmodified _ERINSLLLTW_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8533325195312 2 622.853512 1243.69247 0.15338 9.5532E-05 -0.49028 -0.00030537 -0.3369 -0.00020984 622.8533027587462 65.409 0.33456 64.925 64.727 65.061 -0.48428 47 15 4 0 0 0 0.48629 1 35679 35679 24.991 0 1 16094000 9781 16394 6794 6928 11177 11177 0.08037347977233367 ERINSLLLTW 10 Unmodified _ERINSLLLTW_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.853515625 2 622.853512 1243.69247 0.47719 0.00029722 -0.71363 -0.00044449 -0.23644 -0.00014727 622.8533964959953 67.532 0.65311 67.05 66.758 67.411 -0.48218 83 28 4 0 0 0 0.62665 1 36810 36810 10.8 1.2555 1 6283000 9782 16394 6794 6928 11178 11178 0.08037347977233367 ERINSLLLTW 10 Unmodified _ERINSLLLTW_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.85546875 2 622.853512 1243.69247 1.1047 0.00068807 0.36363 0.00022649 1.4683 0.00091456 622.853569331729 71.418 0.55969 71.457 71.208 71.768 0.039024 57 25 3 0 0 0 0.66658 1 39224 39224 10.8 1.2555 1 5290400 9783 16394 6794 6928 11179 11179 0.08037347977233367 ERINSLLLTW 10 Unmodified _ERINSLLLTW_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.79052734375 2 622.853512 1243.69247 0.83443 0.00051973 -1.1943 -0.00074387 -0.35986 -0.00022414 622.8526347639994 64.87 0.35851 64.87 64.677 65.035 7.6294E-06 43 17 3 0 0 0 0.22316 1 35524 35524 20.415 2.0414 1 8890000 9784 16394 6794 6928 11180 11180 0.08037347977233367 ERINSLLLTW 10 Unmodified _ERINSLLLTW_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.853512 1243.69247 0.15338 9.5532E-05 -0.49028 -0.00030537 -0.3369 -0.00020984 622.8533027587462 65.409 0.33456 64.925 64.727 65.061 -0.48428 0.027248 0.0004098 NaN 20.415 47 15 4 NaN NaN NaN NaN 0 NaN NaN 0 16094000 9785 16394 6794 6928 0.08037347977233367 ERKEVVYHH 9 Unmodified _ERKEVVYHH_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5437622070312 3 399.543878 1195.60981 0.66215 0.00026456 0.62709 0.00025055 1.2892 0.00051511 399.54411521826603 30.251 0.7046 30.171 29.841 30.546 -0.080429 84 26 5 0 0 0 0.52844 1 15610 15610 3.5871 3.5871 1 22897000 + 9786 21279 6795 6929 11181 11181 0.019824509690806735 ERKHRSRSRDR 11 Unmodified _ERKHRSRSRDR_ 0 0 0 ENSG00000108848|ENST00000505658|LUC7L3;ENST00000508482.5_1_17:48797176-48828101:+|nuORF ENSG00000108848|ENST00000505658|LUC7L3 ENSG00000108848|ENST00000505658|LUC7L3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.9422302246094 3 494.941806 1481.80359 0.34804 0.00017226 0.95097 0.00047068 1.299 0.00064294 495.276459422957 22.56 0.30334 22.578 22.346 22.65 0.01749 19 14 2 0 0 0 0.30565 1 11543 11543 2.2527 0.92309 1 12794000 9787 2614 6796 6930 11182 11182 0.08195800457860969 ERKPPLVNE 9 Unmodified _ERKPPLVNE_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1754455566406 3 361.204862 1080.59276 NaN NaN NaN NaN NaN NaN NaN 15.707 1 15.707 15.207 16.207 0 0 0 0 0.84737 1 7591 7591 0.96228 0 1 + 9788 19112 6797 6931 11183 11183 0.055685303633026706 ERLADHFMQR 10 Unmodified _ERLADHFMQR_ 0 0 0 REV__ENSG00000170604|ENST00000302165|IRF2BP1 REV__ENSG00000170604|ENST00000302165|IRF2BP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8818359375 3 434.883906 1301.62989 NaN NaN NaN NaN NaN NaN NaN 73.495 1 73.495 72.995 73.995 0 0 0 0 0.99897 1 40918 40918 0.77653 0.63664 1 + 9789 22495 6798 6932 11184 11184 -0.008861213626232711 ERLGLPVA 8 Unmodified _ERLGLPVA_ 0 0 0 REV__ENST00000397054.7_1_1:43232626-43232671:-|nuORF REV__ENST00000397054.7_1_1:43232626-43232671:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.7584533691406 2 427.758352 853.502152 -0.26334 -0.00011265 0.65007 0.00027807 0.38673 0.00016543 427.75863839163935 33.203 0.23015 33.043 32.913 33.144 -0.15918 15 9 3 0 0 0 0.5284 1 17318 17318 32.117 0 1 1230200 + 9790 26525 6799 6933 11185 11185 0.06954106105649771 ERLLLNPGNQ 10 Unmodified _ERLLLNPGNQ_ 0 0 0 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7994995117188 2 577.319837 1152.62512 3.7941 0.0021904 1.6925 0.00097712 5.4866 0.0031675 577.3211125918698 99.474 0.26006 99.438 99.352 99.613 -0.036301 14 9 2 0 0 0 0.22811 1 55332 55332 14.838 2.3067 1 623430 9791 8566 6800 6934 11186 11186 0.05491317766291104 ERLQFFML 8 Unmodified _ERLQFFML_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|213|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|213|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|213|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2852172851562 2 542.28642 1082.55829 0.51325 0.00027833 1.9961 0.0010825 2.5093 0.0013608 542.7889526956976 46.975 1.1802 41.895 41.393 42.573 -5.0805 286 140 5 0 0 0 0.44122 1 28740 28740 40.449 6.2612 1 171840000 9792 15919 6801 6935 11187 11187 0.020309909508114288 ERLQSAAHAA 10 Unmodified _ERLQSAAHAA_ 0 0 0 SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2736206054688 2 527.275429 1052.53631 NaN NaN NaN NaN NaN NaN NaN 17.812 1 17.812 17.312 18.312 0 0 0 0 0.97855 1 8808 8808 2.9952 0 1 9793 30165 6802 6936 11188 11188 0.01213902526592392 ERLRDNICI 9 Unmodified _ERLRDNICI_ 0 0 0 REV__ENST00000494734.1_1_1:144864924-144866670:-|nuORF REV__ENST00000494734.1_1_1:144864924-144866670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8697814941406 3 377.869485 1130.58663 0.58882 0.0002225 0.55789 0.00021081 1.1467 0.00043331 377.8696658803216 52.279 0.28083 52.22 52.047 52.328 -0.058918 19 13 2 0 0 0 0.40476 1 28337 28337 8.4443 2.2525 1 1663600 + 9794 23022 6803 6937 11189 11189 0.02655688860090777 ERMIVGKK 8 Unmodified _ERMIVGKK_ 0 0 0 ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7858581542969 2 480.786587 959.558621 1.252 0.00060195 1.7862 0.00085876 3.0382 0.0014607 480.78595562976034 90.913 0.17941 84.737 84.659 84.839 -6.1757 24 10 3 0 0 0 0.71527 1 60068 60068 15.847 6.4997 1 10248000 9795 3776 6804 6938 11190 11190 0.0772241067069217 ERMKLEQERQR 11 Unmodified _ERMKLEQERQR_ 0 0 0 ENSG00000134884|ENST00000400198|ARGLU1 ENSG00000134884|ENST00000400198|ARGLU1 ENSG00000134884|ENST00000400198|ARGLU1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.6002807617188 3 501.600058 1501.77834 NaN NaN NaN NaN NaN NaN NaN 32.191 1 32.22 31.72 32.72 0.029743 0 0 0 0.94287 1 16892 16892 0.45452 0.046251 1 9796 4649 6805 6939 11191 11191 0.047525648204100435 ERMLSFQKI 9 Unmodified _ERMLSFQKI_ 0 0 0 REV__ENSG00000164309|ENST00000446378|CMYA5 REV__ENSG00000164309|ENST00000446378|CMYA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2125854492188 3 384.546231 1150.61686 0.98659 0.00037939 -1.143 -0.00043952 -0.15637 -6.0131E-05 384.5462394287019 32.815 0.65652 28.959 28.516 29.172 -3.8562 147 36 6 0 0 0 0.41742 1 18546 18546 7.609 3.0801 1 217890000 + 9797 21904 6806 6940 11192 11192 0.04758047525319853 ERNASITADQ 10 Unmodified _ERNASITADQ_ 0 0 0 REV__ENST00000505573.2_1_5:19233806-19234037:+|nuORF REV__ENST00000505573.2_1_5:19233806-19234037:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8485717773438 3 368.847515 1103.52072 1.1264 0.00041547 -0.27068 -9.9839E-05 0.85571 0.00031563 368.8475289745727 46.663 4.5088 41.583 41.23 45.739 -5.0805 1495 352 6 0 0 0 0.65282 1 31141 31141 4.7159 0 1 23053000000 + 9798 28070 6807 6941 11193 11193 -0.02690428781124865 ERNGIITKY 9 Unmodified _ERNGIITKY_ 0 0 0 nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-2|PTPRD nc|ENSG00000153707|P23468-2|PTPRD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2057800292969 3 365.204862 1092.59276 -0.7449 -0.00027204 1.6605 0.00060642 0.9156 0.00033438 365.20585082348094 28.365 0.28955 28.365 28.231 28.52 0 33 16 3 0 0 0 0.28023 1 14646 14646 12.873 2.722 1 6367200 9799 6271 6808 6942 11194 11194 0.050165303632638825 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2705688476562 2 582.769319 1163.52409 -0.072043 -4.1985E-05 0.28372 0.00016534 0.21168 0.00012336 582.769637905991 39.096 0.20821 38.809 38.696 38.904 -0.28687 20 8 3 0 0 0 0.38092 1 20601 20601 22.736 2.3217 1 5804600 + 9800 24003 6809 6943 11195 11195 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7701416015625 2 582.769319 1163.52409 0.59726 0.00034806 0.39465 0.00022999 0.99191 0.00057805 582.7696048656197 47.454 0.42852 47.102 46.879 47.308 -0.3526 61 20 5 0 0 0 0.38092 1 25470 25470 22.736 1.1993 1 126400000 + 9801 24003 6809 6943 11196 11196 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.769775390625 2 582.769319 1163.52409 0.43276 0.0002522 0.43926 0.00025599 0.87202 0.00050819 582.7694747901651 37.794 0.53299 37.811 37.515 38.048 0.01704 63 25 4 0 0 0 0.38092 1 20065 20065 22.736 2.3217 1 49098000 + 9802 24003 6809 6943 11197 11197 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7683715820312 2 582.769319 1163.52409 0.63145 0.00036799 -0.28895 -0.00016839 0.3425 0.0001996 582.7691167780146 38.677 0.30177 38.688 38.538 38.84 0.011452 45 14 4 0 0 0 0.38092 2 20534 20534;20636 22.736 2.3217 1 40613000 + 9803 24003 6809 6943 11198;11199 11198 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7705688476562 2 582.769319 1163.52409 0.92621 0.00053976 -0.11947 -6.9621E-05 0.80674 0.00047014 582.7691830781138 43.284 0.29683 43.268 43.124 43.421 -0.015671 32 13 3 0 0 0 0.38092 1 23162 23162 22.736 2.3217 1 13583000 + 9804 24003 6809 6943 11200 11200 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7703247070312 2 582.769319 1163.52409 0.56949 0.00033188 1.1385 0.00066348 1.708 0.00099536 582.770022820617 43.884 0.54692 39.119 38.772 39.319 -4.7648 91 34 4 0 0 0 0.38092 2 26669 26534;26669 22.736 2.3217 1 105270000 + 9805 24003 6809 6943 11201;11202 11202 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7692260742188 2 582.769319 1163.52409 0.57339 0.00033415 0.56631 0.00033003 1.1397 0.00066418 582.7695390957474 44.624 0.71405 39.772 39.461 40.175 -4.852 126 53 3 0 0 0 0.38092 2 27271 27271;27400 22.736 2.3217 1 66083000 + 9806 24003 6809 6943 11203;11204 11203 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.767578125 2 582.769319 1163.52409 0.61063 0.00035586 0.64479 0.00037576 1.2554 0.00073162 582.7695463658931 53.279 1.0731 47.475 47.199 48.272 -5.8042 199 66 5 0 0 0 0.48505 1 33531 33531 17.113 0.96379 1 1761099999.9999998 + 9807 24003 6809 6943 11205 11205 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.2669677734375 2 582.769319 1163.52409 0.57339 0.00033415 0.56631 0.00033003 1.1397 0.00066418 582.7695390957474 44.624 0.71405 39.772 39.461 40.175 -4.852 126 53 3 0 0 0 0.22316 1 27143 27143 15.248 6.5031 1 66083000 + 9808 24003 6809 6943 11206 11206 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.3062744140625 2 582.769319 1163.52409 0.56949 0.00033188 1.1385 0.00066348 1.708 0.00099536 582.770022820617 43.884 0.54692 39.119 38.772 39.319 -4.7648 91 34 4 0 0 0 0.22636 1 26771 26771 17.113 0 1 105270000 + 9809 24003 6809 6943 11207 11207 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 582.769319 1163.52409 -0.072043 -4.1985E-05 0.28372 0.00016534 0.21168 0.00012336 582.769637905991 39.096 0.20821 38.809 38.696 38.904 -0.28687 -0.062901 -2.7129E-05 NaN 22.736 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 5804600 + 9810 24003 6809 6943 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 582.769319 1163.52409 -0.030538 -1.7797E-05 1.3078 0.00076213 1.2772 0.00074434 582.7705751256009 38.188 0.25727 37.916 37.761 38.018 -0.27133 0.052459 0.00090311 NaN 22.736 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2910400 + 9811 24003 6809 6943 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.769319 1163.52409 0.63145 0.00036799 -0.28895 -0.00016839 0.3425 0.0001996 582.7691167780146 38.677 0.30177 38.688 38.538 38.84 0.011452 -0.18424 -0.0006946 NaN 22.736 45 14 4 NaN NaN NaN NaN 0 NaN NaN 0 40613000 + 9812 24003 6809 6943 -0.05113501998744141 ERNLAEQSSM 10 Unmodified _ERNLAEQSSM_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.769319 1163.52409 0.43276 0.0002522 0.43926 0.00025599 0.87202 0.00050819 582.7694747901651 37.794 0.53299 37.811 37.515 38.048 0.01704 -0.052459 -0.00010918 NaN 22.736 63 25 4 NaN NaN NaN NaN 0 NaN NaN 0 49098000 + 9813 24003 6809 6943 -0.05113501998744141 ERNQRRQKIQI 11 Unmodified _ERNQRRQKIQI_ 0 0 0 ENST00000342992.10_3_2:179484830-179485015:-|nuORF ENST00000342992.10_3_2:179484830-179485015:-|nuORF ENST00000342992.10_3_2:179484830-179485015:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2879943847656 3 490.28669 1467.83824 1.0522 0.00051587 1.8427 0.00090344 2.8949 0.0014193 490.2874486819923 36.97 0.22512 32.687 32.585 32.81 -4.2835 20 13 3 0 0 0 0.65846 1 21642 21642 6.6235 0 1 7279600 9814 11992 6810 6944 11208 11208 0.12303623545994924 ERPIRLPDRYP 11 Unmodified _ERPIRLPDRYP_ 0 0 0 REV__ENSG00000136213|ENST00000618655|CHST12 REV__ENSG00000136213|ENST00000618655|CHST12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9306335449219 3 471.265004 1410.77318 0.24652 0.00011618 -0.12249 -5.7727E-05 0.12403 5.845E-05 471.265095707533 39.912 0.25632 39.918 39.77 40.026 0.0050583 21 11 3 0 0 0 0.30565 1 21253 21253 2.2527 0.32522 1 2611200 + 9815 20146 6811 6945 11209 11209 0.08422629020105887 ERPSQRHQMLY 11 Unmodified _ERPSQRHQMLY_ 0 0 0 nc|ENSG00000288591|Q9Y2I9|TBC1D30;ENST00000456757.6_1_12:65175002-65212320:+|nuORF nc|ENSG00000288591|Q9Y2I9|TBC1D30 nc|ENSG00000288591|Q9Y2I9|TBC1D30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.8599853515625 2 722.859335 1443.70412 0.84109 0.00060799 0.28228 0.00020405 1.1234 0.00081204 722.8590450701448 90.942 1.211 84.766 84.041 85.252 -6.1757 202 71 5 0 0 0 0.50515 4 60351 59969;60099;60232;60351 16.149 1.2276 1 180020000 9816 16625 6812 6946 11210;11211;11212;11213 11213 1.2217289167892886E-05 ERQKMLRDF 9 Unmodified _ERQKMLRDF_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2190551757812 3 408.216885 1221.62883 -0.19224 -7.8475E-05 -0.79447 -0.00032432 -0.98671 -0.00040279 408.21661543738645 16.674 0.093048 16.679 16.648 16.741 0.0050545 7 5 2 0 0 0 0.59218 1 8380 8380 0.96228 0.18574 1 326180 9817 9023 6813 6947 11214 11214 0.026876642684783292 ERQLTMEWF 9 Unmodified _ERQLTMEWF_ 0 0 0 ENST00000519323.1_1_8:74964868-75011842:+|nuORF ENST00000519323.1_1_8:74964868-75011842:+|nuORF ENST00000519323.1_1_8:74964868-75011842:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8663330078125 3 413.865741 1238.57539 0.56201 0.0002326 0.8239 0.00034098 1.3859 0.00057358 413.86590136227653 40.448 0.3349 40.15 40.008 40.343 -0.29716 22 15 2 0 0 0 0.59218 1 21388 21388 0.96228 0.26461 1 1432500 9818 14703 6814 6948 11215 11215 -0.03435133234052046 ERQPIGRLL 9 Unmodified _ERQPIGRLL_ 0 0 0 nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6 nc|ENSG00000198055|P43250-3|GRK6 nc|ENSG00000198055|P43250-3|GRK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.32861328125 2 541.327465 1080.64038 0.2484 0.00013447 -3.1271 -0.0016928 -2.8787 -0.0015583 541.3257413455467 48.856 0.62611 48.812 48.609 49.235 -0.04369 83 30 4 0 0 0 0.08691 1 26430 26430 36.127 3.3413 1 54642000 9819 10043 6815 6949 11216 11216 0.10328229354149698 ERQTRQLMQ 9 Unmodified _ERQTRQLMQ_ 0 0 0 REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF REV__ENST00000531587.5_1_11:86126125-86133754:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2086181640625 3 397.20839 1188.60334 0.82467 0.00032756 0.35737 0.00014195 1.182 0.00046951 397.20849338034344 42.136 0.43107 37.451 37.217 37.648 -4.6846 74 26 4 0 0 0 0.34999 1 25510 25510 10.151 0 1 55124000 + 9820 20985 6816 6950 11217 11217 0.016581897460582695 ERQTYQHWYSF 11 Unmodified _ERQTYQHWYSF_ 0 0 0 REV__nc|ENSG00000163803|Q6P1J6-5|PLB1 REV__nc|ENSG00000163803|Q6P1J6-5|PLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.5692138671875 3 515.568752 1543.68443 0.54825 0.00028266 -0.24079 -0.00012415 0.30745 0.00015851 515.5685179528929 62.132 0.21621 61.644 61.51 61.726 -0.48764 21 9 3 0 0 0 0.73115 1 33843 33843 0.45452 0 1 2121900 + 9821 21814 6817 6951 11218 11218 -0.06566831010195529 ERRCAKKLQYI 11 Unmodified _ERRCAKKLQYI_ 0 0 0 REV__ENSG00000112599|ENST00000230361|GUCA1B REV__ENSG00000112599|ENST00000230361|GUCA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.9003295898438 2 704.398096 1406.78164 -0.012116 -8.5344E-06 0.34427 0.0002425 0.33215 0.00023397 704.3983496917787 93.734 0.90093 93.734 93.344 94.245 0 137 56 3 0 0 0 0.74203 1 52033 52033 0.30703 0.03801 1 926800 + 9822 18825 6818 6952 11219 11219 0.0945185966511417 ERREQEELER 10 Unmodified _ERREQEELER_ 0 0 0 nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-4|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.5628051757812 3 458.563778 1372.6695 1.1979 0.00054933 -1.4769 -0.00067726 -0.27898 -0.00012793 458.5626953016799 20.638 0.062187 17.945 17.901 17.964 -2.693 6 4 2 0 0 0 0.69626 1 11004 11004 3.3196 0 1 1133600 9823 4716 6819 6953 11220 11220 -0.0019232287820614147 ERRNRRKAIAL 11 Unmodified _ERRNRRKAIAL_ 0 0 0 ENST00000395648.7_2_11:44955194-44955650:-|nuORF ENST00000395648.7_2_11:44955194-44955650:-|nuORF ENST00000395648.7_2_11:44955194-44955650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.62109375 3 461.619892 1381.83785 0.63728 0.00029418 1.6434 0.00075864 2.2807 0.0010528 461.9548295260821 47.697 0.28772 47.658 47.54 47.827 -0.038643 29 13 3 0 0 0 0.70705 1 25708 25708 3.5927 1.8504 1 6460000 9824 12775 6820 6954 11221 11221 0.1622024861680984 ERRNRRKAIAL 11 Unmodified _ERRNRRKAIAL_ 0 0 0 ENST00000395648.7_2_11:44955194-44955650:-|nuORF ENST00000395648.7_2_11:44955194-44955650:-|nuORF ENST00000395648.7_2_11:44955194-44955650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.6212768554688 3 461.619892 1381.83785 1.376 0.0006352 1.9376 0.00089443 3.3136 0.0015296 461.6211126480399 90.656 0.18813 84.48 84.389 84.577 -6.1757 18 10 3 0 0 0 0.50268 1 59915 59915 16.275 6.7306 1 13938000 9825 12775 6820 6954 11222 11222 0.1622024861680984 ERRRARWHWRH 11 Unmodified _ERRRARWHWRH_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.63232421875 3 549.298035 1644.87228 -0.1597 -8.7721E-05 0.43987 0.00024162 0.28017 0.0001539 549.2980246916097 31.129 0.18854 31.159 31.059 31.247 0.030104 12 7 2 0 0 0 0.7453 1 16298 16298 0 0 1 1096400 9826 15861 6821 6955 11223 11223 0.07563509548253933 ERRRARWHWRH 11 Unmodified _ERRRARWHWRH_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5827026367188 4 412.225346 1644.87228 -0.3566 -0.000147 1.639 0.00067564 1.2824 0.00052864 412.4766070696617 31.158 0.16453 31.188 31.059 31.223 0.030106 9 6 2 0 0 0 0.30601 1 16266 16266 0.40827 0.32491 1 1282600 9827 15861 6821 6955 11224 11224 0.07563509548253933 ERRRQEDYWRE 11 Unmodified _ERRRQEDYWRE_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD;chr4:56216273-56272321|149|13.27|0.41|5.02|+|ENST00000504228|CRACD,CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MSMS AL20221201_MKP_PDAC_01 4 811.8911743164062 2 811.892752 1621.77095 NaN NaN NaN NaN NaN NaN NaN 84.514 1 78.338 77.838 78.838 -6.1757 0 0 0 0.94216 1 55604 55604 0.96228 0.65524 1 9828 113 6822 6956 11225 11225 -0.015064514556343056 ERRRQPLMPF 10 Unmodified _ERRRQPLMPF_ 0 0 0 REV__nc|ENSG00000163554|P02549-2|SPTA1 REV__nc|ENSG00000163554|P02549-2|SPTA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.9119262695312 3 443.911796 1328.71356 NaN NaN NaN NaN NaN NaN NaN 29.131 1 29.161 28.661 29.661 0.030106 0 0 0 0.99897 1 15188 15188 0.77653 0.078866 1 + 9829 21785 6823 6957 11226 11226 0.06235034805081341 ERRRRRRRKDE 11 Unmodified _ERRRRRRRKDE_ 0 0 0 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.96826171875 2 806.969994 1611.92543 NaN NaN NaN NaN NaN NaN NaN 109.51 1 109.47 108.97 109.97 -0.047607 0 0 0 0.9435 1 60625 60625 0 0 1 + 9830 19880 6824 6958 11227 11227 0.1439484254024137 ERRRRRRRRRP 11 Unmodified _ERRRRRRRRRP_ 0 0 0 REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF REV__ENST00000372324.5_1_1:44444922-44446927:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.5166625976562 2 825.515237 1649.01592 NaN NaN NaN NaN NaN NaN NaN 53.407 1 52.955 52.455 53.455 -0.45173 0 0 0 0.9435 1 28893 28893 0 0 1 + 9831 26107 6825 6959 11228 11228 0.21737356379185258 ERRRRRRRRRR 11 Unmodified _ERRRRRRRRRR_ 0 0 0 REV__ENST00000377044.8_2_9:74383426-74383705:-|nuORF REV__ENST00000377044.8_2_9:74383426-74383705:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3617553710938 3 570.362032 1708.06427 NaN NaN NaN NaN NaN NaN NaN 13.808 1 13.815 13.315 14.315 0.0073986 0 0 0 0.9435 1 6820 6820 0 0 1 + 9832 24708 6826 6960 11229 11229 0.23855850019072022 ERRRRRRWHWH 11 Unmodified _ERRRRRRWHWH_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.6505737304688 3 577.652701 1729.93627 NaN NaN NaN NaN NaN NaN NaN 27.415 1 27.443 26.943 27.943 0.028664 0 0 0 0.94337 1 14247 14247 0.094841 0.094841 1 9833 11772 6827 6961 11230 11230 0.100502897052138 ERRVGRIVF 9 Unmodified _ERRVGRIVF_ 0 0 0 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8925476074219 3 377.896363 1130.66726 -0.24656 -9.3175E-05 0.73791 0.00027885 0.49135 0.00018568 377.8963053782991 53.9 0.43861 53.833 53.563 54.001 -0.066936 71 27 4 0 0 0 0.14594 1 29152 29152 28.495 9.1326 1 29729000 9834 3444 6828 6962 11231 11231 0.10715337965325489 ERSNPRDIL 9 Unmodified _ERSNPRDIL_ 0 0 0 ENST00000598457.5_1_19:48593521-48593623:-|nuORF ENST00000598457.5_1_19:48593521-48593623:-|nuORF ENST00000598457.5_1_19:48593521-48593623:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2955932617188 2 550.296362 1098.57817 NaN NaN NaN NaN NaN NaN NaN 70.636 1 70.636 70.136 71.136 0 0 0 0 0.7453 1 39352 39352 7.9102 0.62092 1 9835 15784 6829 6963 11232 11232 0.03282458215130646 ERSSFSSFDF 10 Unmodified _ERSSFSSFDF_ 0 0 0 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MSMS AL20221201_MKP_PDAC_01 4 604.7662963867188 2 604.76456 1207.51457 NaN NaN NaN NaN NaN NaN NaN 64.476 1 58.3 57.8 58.8 -6.1757 0 0 0 0.48286 1 41775 41775 38.176 15.027 1 9836 1618 6830 6964 11233 11233 -0.08088947012606695 ERSTIMSHLF 10 Unmodified _ERSTIMSHLF_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3109130859375 2 610.808248 1219.60194 0.56488 0.00034503 1.134 0.00069267 1.6989 0.0010377 610.8091600399042 89.63 0.40959 89.672 89.504 89.913 0.042175 31 14 3 0 0 0 0.41822 1 49860 49860 30.637 10.222 1 12949000 9837 7256 6831 6965 11234 11234 0.000925556573065478 ERTAVILRR 9 Unmodified _ERTAVILRR_ 0 0 0 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 REV__ENSG00000178567|ENST00000322716|EPM2AIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.346923828125 2 557.346189 1112.67783 1.6893 0.00094155 1.6834 0.00093825 3.3728 0.0018798 557.3470449369929 104.58 0.078186 98.408 98.36 98.438 -6.1757 6 3 2 0 0 0 0.59532 1 70046 70046 1.6526 0 1 5619000 + 9838 23050 6832 6966 11235 11235 0.12599320619756327 ERTEIKLHF 9 Unmodified _ERTEIKLHF_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.7619323730469 3 391.552262 1171.63496 0.70425 0.00027575 2.776 0.001087 3.4803 0.0013627 391.5535859693371 57.915 0.37671 57.849 57.593 57.97 -0.066036 25 18 2 0 0 0 0.21822 1 31444 31444 0.96228 0 1 1513200 + + 9839 16861 6833 6967 11236 11236 0.05600505771644748 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 742.8307495117188 2 742.830971 1483.64739 0.61278 0.00045519 -0.82313 -0.00061145 -0.21035 -0.00015626 742.8302906719708 46.319 0.5004 46.319 46.044 46.544 0 108 23 6 0 0 0 0.67477 1 25209 25209 4.897 0 1 148690000 9840 11413 6834 6968 11237 11237 -0.07508870618244146 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.830810546875 2 742.830971 1483.64739 0.3897 0.00028948 -0.47915 -0.00035593 -0.089454 -6.6449E-05 742.8306165729642 46.702 0.60867 46.365 46.073 46.681 -0.33664 110 30 5 0 0 0 0.67477 1 24982 24982 4.897 0 1 192600000 9841 11413 6834 6968 11238 11238 -0.07508870618244146 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.332275390625 2 742.830971 1483.64739 0.45918 0.00034109 -0.35426 -0.00026315 0.10493 7.7942E-05 742.8306805691383 47.343 0.82122 46.99 46.588 47.409 -0.3526 129 40 5 0 0 0 0.70147 2 25300 25300;25402 4.897 2.1618 1 123960000 9842 11413 6834 6968 11239;11240 11239 -0.07508870618244146 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.8309936523438 2 742.830971 1483.64739 0.5781 0.00042943 -0.27649 -0.00020539 0.30161 0.00022405 742.8307548779015 50.673 0.54516 50.259 50.012 50.557 -0.41351 83 26 4 0 0 0 0.72131 1 27446 27446 2.4985 1.169 1 13046000 9843 11413 6834 6968 11241 11241 -0.07508870618244146 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.8290405273438 2 742.830971 1483.64739 NaN NaN NaN NaN NaN NaN NaN 53.141 1 52.689 52.189 53.189 -0.45173 0 0 0 0.94037 1 28745 28745 2.4985 1.169 1 9844 11413 6834 6968 11242 11242 -0.07508870618244146 ERTERREDQYC 11 Unmodified _ERTERREDQYC_ 0 0 0 ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF ENST00000281182.8_1_11:134130942-134131259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 742.8319091796875 2 742.830971 1483.64739 1.1351 0.00084317 -0.54504 -0.00040487 0.59004 0.0004383 742.8305653688572 46.391 0.45199 46.357 46.12 46.572 -0.033417 50 21 3 0 0 0 0.557 1 25019 25019 8.1555 0 1 13929000 9845 11413 6834 6968 11243 11243 -0.07508870618244146 ERTGSCIPLHS 11 Unmodified _ERTGSCIPLHS_ 0 0 0 ENSG00000183631|ENST00000371125|PRR32 ENSG00000183631|ENST00000371125|PRR32 ENSG00000183631|ENST00000371125|PRR32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5332946777344 3 400.532762 1198.57646 0.58982 0.00023624 0.31094 0.00012454 0.90077 0.00036079 400.53290409151646 68.247 0.25478 67.767 67.595 67.85 -0.48071 16 11 2 0 0 0 0.73237 1 37278 37278 1.2148 0.021489 1 1027100 9846 9171 6835 6969 11244 11244 -0.014889188651295626 ERTQTVSI 8 Unmodified _ERTQTVSI_ 0 0 0 nc|ENSG00000127946|O00291-3|HIP1;ENSG00000127946|ENST00000336926|HIP1 nc|ENSG00000127946|O00291-3|HIP1 nc|ENSG00000127946|O00291-3|HIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2546691894531 2 467.253631 932.49271 -0.1429 -6.6772E-05 -0.064568 -3.017E-05 -0.20747 -9.6942E-05 467.25342021178125 26.66 0.25216 26.66 26.551 26.803 0 20 11 2 0 0 0 0.50673 1 13705 13705 34.102 0 1 1307500 9847 4033 6836 6970 11245 11245 0.023762930294765283 ERTRRRQVAF 10 Unmodified _ERTRRRQVAF_ 0 0 0 ENST00000320081.9_1_2:29338399-29344251:+|nuORF ENST00000320081.9_1_2:29338399-29344251:+|nuORF ENST00000320081.9_1_2:29338399-29344251:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.8748779296875 2 659.876176 1317.7378 1.3131 0.00086647 -1.9359 -0.0012774 -0.62281 -0.00041098 659.8746806898996 91.229 0.41989 91.265 91.139 91.559 0.036499 26 15 2 0 0 0 0.54684 1 50802 50802 13.906 5.7505 1 5422600 9848 11761 6837 6971 11246 11246 0.09164011282973661 ERTSSSTI 8 Unmodified _ERTSSSTI_ 0 0 0 REV__nc|ENSG00000116962|P14543-2|NID1 REV__nc|ENSG00000116962|P14543-2|NID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 880.4354248046875 1 880.437051 879.429775 0.49959 0.00043986 -2.2575 -0.0019876 -1.7579 -0.0015477 880.4345999121857 72.173 0.32291 72.212 72.073 72.396 0.039024 24 15 2 0 0 0 0.63229 2 39712 39712;39817 23.148 0 1 3704900 + 9849 19075 6838 6972 11247;11248 11247 -0.014762727585548419 ERTSSSTI 8 Unmodified _ERTSSSTI_ 0 0 0 REV__nc|ENSG00000116962|P14543-2|NID1 REV__nc|ENSG00000116962|P14543-2|NID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 880.4354858398438 1 880.437051 879.429775 0.54128 0.00047657 -1.6937 -0.0014912 -1.1524 -0.0010146 880.4351146114602 63.239 0.29714 57.063 56.916 57.213 -6.1757 30 16 2 0 0 0 0.63229 2 40809 40809;40939 23.148 0 1 22843000 + 9850 19075 6838 6972 11249;11250 11249 -0.014762727585548419 ERVFFARES 9 Unmodified _ERVFFARES_ 0 0 0 REV__ENSG00000162378|ENST00000294353|ZYG11B REV__ENSG00000162378|ENST00000294353|ZYG11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7928466796875 2 570.793455 1139.57236 0.67692 0.00038638 -0.2429 -0.00013865 0.43401 0.00024773 570.7932981575459 58.346 0.33625 58.285 58.116 58.452 -0.060722 64 16 5 0 0 0 0.05447 1 31725 31725 43.858 9.4566 1 56442000 + 9851 21637 6839 6973 11251 11251 0.008153597034834092 ERVFGFPVHY 10 Unmodified _ERVFGFPVHY_ 0 0 0 ENSG00000119772|ENST00000321117|DNMT3A;nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;ENST00000380756.7_1_2:25457150-25462270:-|nuORF ENSG00000119772|ENST00000321117|DNMT3A ENSG00000119772|ENST00000321117|DNMT3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.55029296875 3 417.548741 1249.62439 NaN NaN NaN NaN NaN NaN NaN 24.216 1 24.216 23.716 24.716 0 0 0 0 0.98914 1 12367 12367 0.77653 0 1 9852 3467 6840 6974 11252 11252 0.009565231172473432 ERVIILLKI 9 Unmodified _ERVIILLKI_ 0 0 0 REV__ENSG00000249853|ENST00000312719|HS3ST5 REV__ENSG00000249853|ENST00000312719|HS3ST5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8763427734375 2 548.876259 1095.73797 1.8892 0.0010369 0.41018 0.00022514 2.2993 0.0012621 548.8763515623109 93.695 0.34529 93.718 93.546 93.892 0.022987 29 13 3 0 0 0 0.062454 1 52068 52068 41.956 0 1 2406700 + 9853 24496 6841 6975 11253 11253 0.19392618230290282 ERVIILLKI 9 Unmodified _ERVIILLKI_ 0 0 0 REV__ENSG00000249853|ENST00000312719|HS3ST5 REV__ENSG00000249853|ENST00000312719|HS3ST5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.876259 1095.73797 1.8892 0.0010369 0.41018 0.00022514 2.2993 0.0012621 548.8763515623109 93.695 0.34529 93.718 93.546 93.892 0.022987 0 0 NaN 41.956 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2406700 + 9854 24496 6841 6975 0.19392618230290282 ERVKYSYYSAS 11 Unmodified _ERVKYSYYSAS_ 0 0 0 REV__ENST00000585805.5_1_17:40986231-40986351:+|nuORF REV__ENST00000585805.5_1_17:40986231-40986351:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 676.8287353515625 2 676.827692 1351.64083 0.13584 9.194E-05 -0.011428 -7.7349E-06 0.12441 8.4205E-05 676.8276661429483 67.656 1.0997 67.656 67.271 68.371 0 89 52 2 0 0 0 0.73389 1 37568 37568 1.0715 0.67075 1 1684700 + 9855 29102 6842 6976 11254 11254 -0.020924405073174057 ERVLFGGC 8 Unmodified _ERVLFGGC_ 0 0 0 REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7217407226562 2 440.720913 879.427273 0.92774 0.00040887 0.99797 0.00043983 1.9257 0.0008487 440.72126946184164 63.236 0.87181 57.06 56.78 57.652 -6.1757 122 48 3 0 0 0 0.78849 1 41154 41154 9.3474 0 1 483770000 + 9856 18068 6843 6977 11255 11255 -0.017263996972019413 ERVLQLLHYLL 11 Unmodified _ERVLQLLHYLL_ 0 0 0 ENST00000510413.5_2_4:151837871-151842384:-|nuORF ENST00000510413.5_2_4:151837871-151842384:-|nuORF ENST00000510413.5_2_4:151837871-151842384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2821655273438 3 466.281883 1395.82382 0.43566 0.00020314 -0.69875 -0.00032582 -0.26309 -0.00012267 466.2814254317048 68.123 0.2572 68.149 68.004 68.261 0.025154 28 12 3 0 0 0 0.60536 1 37431 37431 11.065 3.1199 1 6102600 9857 14589 6844 6978 11256 11256 0.14174158345167598 ERVLQLLHYLL 11 Unmodified _ERVLQLLHYLL_ 0 0 0 ENST00000510413.5_2_4:151837871-151842384:-|nuORF ENST00000510413.5_2_4:151837871-151842384:-|nuORF ENST00000510413.5_2_4:151837871-151842384:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2821960449219 3 466.281883 1395.82382 0.70799 0.00033012 0.25857 0.00012057 0.96657 0.00045069 466.2819052358464 90.321 0.31504 84.145 84.025 84.34 -6.1757 44 18 3 0 0 0 0.6704 1 59651 59651 7.0341 2.9175 1 16982000 9858 14589 6844 6978 11257 11257 0.14174158345167598 ERVNCVQY 8 Unmodified _ERVNCVQY_ 0 0 0 REV__ENSG00000182580|ENST00000330394|EPHB3 REV__ENSG00000182580|ENST00000330394|EPHB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2422485351562 2 505.739834 1009.46511 0.33533 0.00016959 -0.81262 -0.00041097 -0.47729 -0.00024138 505.73958498711363 70.018 0.83905 70.018 69.775 70.614 0 385 70 7 0 0 0 0.79669 1 38974 38974 8.5933 0 1 175880000 + 9859 23281 6845 6979 11258 11258 -0.03923933502414911 ERVRVQVLA 9 Unmodified _ERVRVQVLA_ 0 0 0 REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1 REV__nc|ENSG00000119946|Q9NRU3-2|CNNM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2218933105469 3 357.220735 1068.64038 NaN NaN NaN NaN NaN NaN NaN 28.106 1 28.136 27.636 28.636 0.029564 0 0 0 0.41346 1 14623 14623 13.615 0 1 + 9860 19222 6846 6980 11259 11259 0.10880229354143012 ERWSDELRL 9 Unmodified _ERWSDELRL_ 0 0 0 REV__nc|ENSG00000171680|O94827-4|PLEKHG5 REV__nc|ENSG00000171680|O94827-4|PLEKHG5 MSMS AL20221201_MKP_PDAC_01 4 401.7142944335938 3 401.875405 1202.60439 NaN NaN NaN NaN NaN NaN NaN 23.054 1 20.275 19.775 20.775 -2.7784 0 0 0 0.7453 1 12448 12448 4.897 1.0207 1 + 9861 22588 6847 6981 11260 11260 0.011187273866198666 ERWWEWLLHSS 11 Unmodified _ERWWEWLLHSS_ 0 0 0 ENST00000451442.5_3_20:24944228-24944435:-|nuORF ENST00000451442.5_3_20:24944228-24944435:-|nuORF ENST00000451442.5_3_20:24944228-24944435:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.5849304199219 3 510.249242 1527.7259 0.34361 0.00017532 0.49131 0.00025069 0.83492 0.00042602 510.249379862927 18.3 0.17068 18.306 18.216 18.386 0.0060482 31 13 4 0 0 0 0.73349 1 9244 9244 1.1098 0.096179 1 3626500 9862 13523 6848 6982 11261 11261 -0.016856502508517224 ERWWEWLLHSS 11 Unmodified _ERWWEWLLHSS_ 0 0 0 ENST00000451442.5_3_20:24944228-24944435:-|nuORF ENST00000451442.5_3_20:24944228-24944435:-|nuORF ENST00000451442.5_3_20:24944228-24944435:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2505187988281 3 510.249242 1527.7259 0.92434 0.00047164 2.2878 0.0011673 3.2121 0.001639 510.2506580960622 19.872 0.23572 17.216 17.058 17.294 -2.6564 26 14 2 0 0 0 0.72311 1 10517 10517 2.084 0.97421 1 2843100 9863 13523 6848 6982 11262 11262 -0.016856502508517224 ERYESGSS 8 Unmodified _ERYESGSS_ 0 0 0 REV__ENSG00000214694|ENST00000409978|ARHGEF33 REV__ENSG00000214694|ENST00000409978|ARHGEF33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.6976318359375 2 457.696146 913.377739 1.0642 0.00048707 1.2534 0.00057366 2.3175 0.0010607 457.6967865719151 42.521 0.31607 37.836 37.693 38.009 -4.6846 34 21 2 0 0 0 0.75262 2 25766 25641;25766 12.532 3.587 1 15752000 + 9864 24319 6849 6983 11263;11264 11264 -0.08241436172318117 ERYGGTES 8 Unmodified _ERYGGTES_ 0 0 0 REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF REV__ENST00000355196.6_1_4:83821322-83821651:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.6997985839844 2 449.698689 897.382825 0.59162 0.00026605 1.3166 0.00059206 1.9082 0.00085811 449.69940943585794 56.267 0.43368 50.29 50.081 50.515 -5.9769 47 24 3 0 0 0 0.71527 2 35959 35835;35959 15.847 6.4997 1 37374000 + 9865 25803 6850 6984 11265;11266 11266 -0.06997132309709286 ERYHDCQFSEH 11 Unmodified _ERYHDCQFSEH_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 725.7940673828125 2 725.793857 1449.57316 0.28673 0.00020811 -0.30729 -0.00022303 -0.020559 -1.4922E-05 725.7938957389026 53.66 0.31391 53.66 53.506 53.82 0 72 14 7 0 0 0 0.72981 1 29825 29825 0 0 1 30031000 9866 1010 6851 6985 11267 11267 -0.133642137097695 ERYYKGSTF 9 Unmodified _ERYYKGSTF_ 0 0 0 REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7813720703125 2 575.780013 1149.54547 0.28552 0.0001644 0.12449 7.1678E-05 0.41001 0.00023608 575.7802037353343 65.499 0.33449 65.015 64.835 65.169 -0.48428 39 15 4 0 0 0 0.094149 2 35692 35692;35800 34.402 5.3201 1 9630900 + 9867 30127 6852 6986 11268;11269 11268 -0.023317489077271603 ERYYKGSTF 9 Unmodified _ERYYKGSTF_ 0 0 0 REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 575.780013 1149.54547 0.28552 0.0001644 0.12449 7.1678E-05 0.41001 0.00023608 575.7802037353343 65.499 0.33449 65.015 64.835 65.169 -0.48428 -0.026213 -3.767E-05 NaN 34.402 39 15 4 NaN NaN NaN NaN 0 NaN NaN 0 9630900 + 9868 30127 6852 6986 -0.023317489077271603 ERYYKGSTF 9 Unmodified _ERYYKGSTF_ 0 0 0 REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant REV__TRIM51|p.W343R|1|0.17|ENSG00000124900|chr11:55891300-55891300|T/C|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 575.780013 1149.54547 0.72795 0.00041914 0.2491 0.00014343 0.97705 0.00056257 575.7808054743609 65.067 0.30556 65.067 64.854 65.16 7.6294E-06 0.026213 0.00010583 NaN 34.402 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3893500 + 9869 30127 6852 6986 -0.023317489077271603 ESAFPLKVF 9 Unmodified _ESAFPLKVF_ 0 0 0 ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2867431640625 2 519.286943 1036.55933 0.10215 5.3043E-05 -1.0359 -0.00053795 -0.93379 -0.0004849 519.286855267322 68.973 0.38686 68.492 68.376 68.763 -0.48071 39 16 3 0 0 0 0.10734 1 37696 37696 32.305 6.9062 1 3742500 9870 5382 6853 6987 11270 11270 0.042515285913850676 ESAFPLKVF 9 Unmodified _ESAFPLKVF_ 0 0 0 ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.286943 1036.55933 0.55457 0.00028798 0.22637 0.00011755 0.78094 0.00040553 519.2873365576457 68.496 0.22438 68.521 68.397 68.621 0.025146 0.014319 0.00055127 NaN 32.305 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1307300 9871 5382 6853 6987 0.042515285913850676 ESAKWHCYL 9 Unmodified _ESAKWHCYL_ 0 0 0 nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL nc|ENSG00000136603|P12757-4|SKIL nc|ENSG00000136603|P12757-4|SKIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5121765136719 3 379.511298 1135.51206 -0.54381 -0.00020638 0.93496 0.00035483 0.39115 0.00014845 379.51182024545705 26.417 0.24675 26.417 26.283 26.53 0 22 11 3 0 0 0 0.50598 1 13582 13582 7.1017 0 1 2013500 9872 4837 6854 6988 11271 11271 -0.05027073951282546 ESAKWHCYL 9 Unmodified _ESAKWHCYL_ 0 0 0 nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL;nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL nc|ENSG00000136603|P12757-4|SKIL nc|ENSG00000136603|P12757-4|SKIL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.511298 1135.51206 0.36879 0.00013996 0.57791 0.00021932 0.9467 0.00035928 379.510948917982 26.417 0.10515 26.386 26.303 26.408 -0.031708 -0.015499 -0.00034095 NaN 7.1017 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4037900 9873 4837 6854 6988 -0.05027073951282546 ESALETVSDL 10 Unmodified _ESALETVSDL_ 0 0 0 REV__nc|ENSG00000100815|Q15643-2|TRIP11 REV__nc|ENSG00000100815|Q15643-2|TRIP11 MSMS AL20221201_MKP_PDAC_01 4 532.2620849609375 2 532.261319 1062.50808 NaN NaN NaN NaN NaN NaN NaN 47.132 1 42.052 41.552 42.552 -5.0805 0 0 0 0.21708 1 29221 29221 41.84 5.7126 1 + 9874 18110 6855 6989 11272 11272 -0.020668849640060216 ESAPPSPQY 9 Unmodified _ESAPPSPQY_ 0 0 0 ENSG00000006625|ENST00000275428|GGCT ENSG00000006625|ENST00000275428|GGCT ENSG00000006625|ENST00000275428|GGCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.22509765625 2 488.224539 974.434526 -0.43248 -0.00021115 0.59278 0.00028941 0.1603 7.826E-05 488.22510552857204 28.704 0.61519 28.704 28.467 29.082 0 58 30 2 0 0 0 0.2143 3 14862 14757;14862;14976 21.747 10.106 1 2364100 9875 341 6856 6990 11273;11274;11275 11274 -0.053713886158107016 ESARIEYDAY 10 Unmodified _ESARIEYDAY_ 0 0 0 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7821044921875 2 608.777667 1215.54078 -0.21662 -0.00013187 3.6176 0.0022023 3.401 0.0020705 608.7805994043385 35.573 0.15829 35.573 35.515 35.674 0 14 7 2 0 0 0 0.095786 1 18830 18830 47.594 25.848 1 3691200 9876 7147 6857 6991 11276 11276 -0.05836677841125493 ESAVDLFSY 9 Unmodified _ESAVDLFSY_ 0 0 0 ENST00000467753.1_1_6:127838909-127839799:-|nuORF;ENST00000481848.6_2_6:127837845-127839799:-|nuORF;ENST00000525778.5_2_6:127839703-127839799:-|nuORF ENST00000467753.1_1_6:127838909-127839799:-|nuORF ENST00000467753.1_1_6:127838909-127839799:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7393798828125 2 515.740022 1029.46549 0.30698 0.00015832 0.64259 0.00033141 0.94958 0.00048973 515.7405149078788 78.376 0.42848 72.2 72.008 72.437 -6.1757 34 26 2 0 0 0 0.30562 1 51246 51246 16.942 1.0951 1 24066000 9877 13787 6858 6992 11277 11277 -0.048062353015666304 ESAVLHDSHI 10 Unmodified _ESAVLHDSHI_ 0 0 0 REV__ENST00000244777.6_2_6:8015884-8027440:-|nuORF REV__ENST00000244777.6_2_6:8015884-8027440:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2771606445312 2 554.275095 1106.53564 NaN NaN NaN NaN NaN NaN NaN 62.242 1 61.754 61.254 62.254 -0.48764 0 0 0 0.83398 1 33909 33909 10.824 0 1 + 9878 23711 6859 6993 11278 11278 -0.013369369130941777 ESCEEDEDFE 10 Unmodified _ESCEEDEDFE_ 0 0 0 REV__ENSG00000166233|ENST00000379887|ARIH1 REV__ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.13671875 3 411.136291 1230.38704 0.4069 0.00016729 0.18756 7.7114E-05 0.59447 0.00024441 411.1364751302212 54.794 0.25581 54.794 54.641 54.897 0 24 10 3 0 0 0 0.7191 1 30411 30411 0.77653 0.50751 1 4339300 + 9879 22096 6860 6994 11279 11279 -0.21893500459623283 ESCENGPHPL 10 Unmodified _ESCENGPHPL_ 0 0 0 REV__ENST00000493395.1_1_1:110202524-110203873:+|nuORF REV__ENST00000493395.1_1_1:110202524-110203873:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7326049804688 2 541.732206 1081.44986 0.16924 9.1683E-05 0.47074 0.00025502 0.63998 0.0003467 541.7324486980216 62.459 0.38131 62.459 62.274 62.655 0 44 24 2 0 0 0 0.6606 1 34900 34900 7.2892 0.93513 1 22773000 + 9880 27918 6861 6995 11280 11280 -0.08760845090250768 ESDLERYY 8 Unmodified _ESDLERYY_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.74169921875 2 537.740554 1073.46655 0.73229 0.00039378 0.55353 0.00029765 1.2858 0.00069143 537.7407374576209 66.056 0.28693 59.88 59.758 60.045 -6.1757 24 16 2 0 0 0 0.63229 1 42938 42938 23.148 6.2061 1 14802000 9881 6592 6862 6996 11281 11281 -0.06724020932665553 ESDLHPQKY 9 Unmodified _ESDLHPQKY_ 0 0 0 ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENST00000497973.5_1_1:46032543-46034819:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2487182617188 2 558.769645 1115.52474 -0.051328 -2.8681E-05 -0.25757 -0.00014392 -0.3089 -0.0001726 558.7691136894489 30.821 0.22317 30.821 30.73 30.953 0 15 10 2 0 0 0 0.20727 1 16058 16058 4.3292 0 1 1903900 9882 14408 6863 6997 11282 11282 -0.028403392873769917 ESDRFLHIMQ 10 Unmodified _ESDRFLHIMQ_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.3120727539062 2 638.311155 1274.60776 0.26431 0.00016872 1.1827 0.00075491 1.447 0.00092363 638.3119072598118 79.426 0.43352 79.481 79.31 79.744 0.05497 53 16 4 0 0 0 0.18021 2 43867 43867;43967 36.127 0 1 38010000 9883 4191 6864 6998 11283;11284 11283 -0.0185634583101546 ESDVVDALY 9 Unmodified _ESDVVDALY_ 0 0 0 REV__nc|ENSG00000115677|Q00341-2|HDLBP REV__nc|ENSG00000115677|Q00341-2|HDLBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7371520996094 2 505.73748 1009.46041 NaN NaN NaN NaN NaN NaN NaN 73.34 1 73.34 72.84 73.84 0 0 0 0 0.46757 1 40828 40828 16.942 5.302 1 + 9884 19002 6865 6999 11285 11285 -0.04394539164195521 ESEALALLL 9 Unmodified _ESEALALLL_ 0 0 0 REV__nc|ENSG00000171444|P23508|MCC REV__nc|ENSG00000171444|P23508|MCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5459594726562 1 958.545539 957.538263 -0.02729 -2.6159E-05 -0.32991 -0.00031624 -0.3572 -0.00034239 958.5454141827927 89.973 0.32375 89.973 89.804 90.127 0 52 24 3 0 0 0 0.06187 1 49719 49719 42.095 0 1 1606900 + 9885 22560 6866 7000 11286 11286 0.057795184918632 ESEECNDPHI 10 Unmodified _ESEECNDPHI_ 0 0 0 REV__ENSG00000135842|ENST00000367511|NIBAN1 REV__ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.4895324707031 3 391.488999 1171.44517 -0.40259 -0.00015761 1.1964 0.00046837 0.7938 0.00031076 391.4893099176105 21.968 0.24245 21.968 21.901 22.143 0 37 21 2 0 0 0 0.70951 1 11178 11178 0.77653 0.27058 1 1534400 + 9886 20102 6867 7001 11287 11287 -0.13369774023681202 ESEECNDPHI 10 Unmodified _ESEECNDPHI_ 0 0 0 REV__ENSG00000135842|ENST00000367511|NIBAN1 REV__ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.488999 1171.44517 -0.40259 -0.00015761 1.1964 0.00046837 0.7938 0.00031076 391.4893099176105 21.968 0.24245 21.968 21.901 22.143 0 -0.086642 -0.00047148 NaN 0.77653 37 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1534400 + 9887 20102 6867 7001 -0.13369774023681202 ESEECNDPHI 10 Unmodified _ESEECNDPHI_ 0 0 0 REV__ENSG00000135842|ENST00000367511|NIBAN1 REV__ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 391.488999 1171.44517 0.35795 0.00014013 1.7671 0.00069181 2.1251 0.00083195 391.4897165970965 25.024 0.41183 22.141 21.888 22.3 -2.8831 0.086642 0.00019885 NaN 0.77653 73 39 2 NaN NaN NaN NaN 0 NaN NaN 0 27376000 + 9888 20102 6867 7001 -0.13369774023681202 ESEENDQEEMP 11 Unmodified _ESEENDQEEMP_ 0 0 0 REV__nc|ENSG00000116580|Q3T8J9-3|GON4L REV__nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.1664123535156 3 446.166361 1335.47726 0.58416 0.00026063 -0.56787 -0.00025336 0.016297 7.2713E-06 446.1663169986709 43.138 0.47045 43.138 42.909 43.379 0 60 23 3 0 0 0 0.74157 1 23450 23450 0.094841 0 1 17391000 + 9889 19048 6868 7002 11288 11288 -0.17706451131198264 ESEERHFLL 9 Unmodified _ESEERHFLL_ 0 0 0 REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF REV__ENST00000358731.8_2_5:70754407-70754644:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2890014648438 2 580.290745 1158.56694 0.33517 0.0001945 -2.7647 -0.0016043 -2.4295 -0.0014098 580.2890453231714 100.7 0.14104 100.57 100.46 100.6 -0.13293 11 5 3 0 0 0 0.58145 1 54981 54981 0.45834 0.057624 1 1898600 + 9890 16746 6869 7003 11289 11289 -0.0060036387899344845 ESEHLKESL 9 Unmodified _ESEHLKESL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2726440429688 2 536.269478 1070.5244 0.4494 0.000241 2.2679 0.0012162 2.7173 0.0014572 536.2717177786524 51.612 0.452 51.612 51.412 51.864 0 61 20 5 0 0 0 0.015445 1 28465 28465 68.081 9.4019 1 100080000 9891 5608 6870 7004 11290 11290 -0.008037590072262901 ESEHLKESL 9 Unmodified _ESEHLKESL_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.269478 1070.5244 0.41773 0.00022402 2.2286 0.0011951 2.6463 0.0014191 536.271222346579 52.091 0.27936 51.657 51.55 51.83 -0.43367 -0.07611 -0.0012721 NaN 68.081 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 9343100 9892 5608 6870 7004 -0.008037590072262901 ESEKHDEAWAL 11 Unmodified _ESEKHDEAWAL_ 0 0 0 REV__nc|ENSG00000111405|P21128-2|ENDOU REV__nc|ENSG00000111405|P21128-2|ENDOU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.8026123046875 2 657.801674 1313.58879 -0.80374 -0.0005287 1.6095 0.0010587 0.80575 0.00053003 657.8028694853929 28.461 0.21071 28.461 28.368 28.579 0 18 12 2 0 0 0 0.64126 1 14712 14712 11.495 2.7493 1 2121000 + 9893 29569 6871 7005 11291 11291 -0.05545603921086695 ESEWIINT 8 Unmodified _ESEWIINT_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2399597167969 2 496.24019 990.465826 0.99977 0.00049612 -0.37096 -0.00018409 0.6288 0.00031204 496.24000304344196 21.951 0.2321 19.217 19.122 19.354 -2.7348 22 13 2 0 0 0 0.58902 1 11783 11783 26.884 2.2098 1 1962400 9894 8362 6872 7006 11292 11292 -0.029788155817072948 ESFGRISF 8 Unmodified _ESFGRISF_ 0 0 0 REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF REV__ENST00000543397.1_1_12:64488769-64491083:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.6976318359375 2 471.737617 941.460681 0.63031 0.00029734 1.6921 0.00079821 2.3224 0.0010956 471.73803681085167 38.568 0.082813 38.568 38.494 38.577 0 5 3 2 0 0 0 8.7369 1 20602 20602 24.674 3.8027 1 404670 + 9895 28633 6873 7007 11293 11293 -0.012390746536652841 ESFKWETY 8 Unmodified _ESFKWETY_ 0 0 0 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.248779296875 2 545.248015 1088.48148 0.87185 0.00047537 -0.61547 -0.00033558 0.25638 0.00013979 545.2482661440373 54.319 0.39574 54.319 54.132 54.528 0 37 17 3 0 0 0 0.67481 2 30155 30080;30155 19.439 2.3482 1 2990700 + 9896 17907 6874 7008 11294;11295 11295 -0.059225290646509166 ESFKWETY 8 Unmodified _ESFKWETY_ 0 0 0 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 REV__nc|ENSG00000092200|Q96KN7-3|RPGRIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7169799804688 2 545.248015 1088.48148 0.87185 0.00047537 -0.61547 -0.00033558 0.25638 0.00013979 545.2482661440373 54.319 0.39574 54.319 54.132 54.528 0 37 17 3 0 0 0 8.7369 1 30080 30080 12.532 2.3482 1 2990700 + 9897 17907 6874 7008 11296 11296 -0.059225290646509166 ESFMRTDD 8 Unmodified _ESFMRTDD_ 0 0 0 ENSG00000009724|ENST00000400897|MASP2 ENSG00000009724|ENST00000400897|MASP2 ENSG00000009724|ENST00000400897|MASP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7058410644531 2 500.705657 999.39676 NaN NaN NaN NaN NaN NaN NaN 85.522 1 85.02 84.52 85.52 -0.5015 0 0 0 0.96305 1 46803 46803 7.9102 3.5809 1 9898 406 6875 7009 11297 11297 -0.10296222872921135 ESGEADCKEW 10 Unmodified _ESGEADCKEW_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MSMS AL20221201_MKP_PDAC_01 4 385.1539611816406 3 385.153728 1152.43935 NaN NaN NaN NaN NaN NaN NaN 4.7209 1 2.239 1.739 2.739 -2.482 0 0 0 1.0047 1 2397 2397 0.15932 0 1 + + 9899 16866 6876 7010 11298 11298 -0.13076872535361872 ESGEADCKEW 10 Unmodified _ESGEADCKEW_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MSMS AL20221201_MKP_PDAC_01 4 385.1538696289062 3 385.153728 1152.43935 NaN NaN NaN NaN NaN NaN NaN 5.8257 1 3.3437 2.8437 3.8437 -2.482 0 0 0 1.0047 1 2951 2951 0.15932 0 1 + + 9900 16866 6876 7010 11299 11299 -0.13076872535361872 ESGEADCKEW 10 Unmodified _ESGEADCKEW_ 0 0 0 REV__CON__Q29RQ1 REV__CON__Q29RQ1 MSMS AL20221201_MKP_PDAC_01 4 385.1534118652344 3 385.153728 1152.43935 NaN NaN NaN NaN NaN NaN NaN 7.2679 1 4.7859 4.2859 5.2859 -2.482 0 0 0 1.0047 1 3669 3669 0.15932 0 1 + + 9901 16866 6876 7010 11300 11300 -0.13076872535361872 ESHESEGESF 10 Unmodified _ESHESEGESF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-6|TTN REV__nc|ENSG00000155657|Q8WZ42-6|TTN MSMS AL20221201_MKP_PDAC_01 4 569.2195434570312 2 569.220182 1136.42581 NaN NaN NaN NaN NaN NaN NaN 70.42 1 64.244 63.744 64.744 -6.1757 0 0 0 0.92825 1 46018 46018 6.7232 1.4925 1 + 9902 29718 6877 7011 11301 11301 -0.13694407042930834 ESILASVNY 9 Unmodified _ESILASVNY_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2568664550781 2 498.25584 994.497126 0.907 0.00045192 0.84176 0.00041941 1.7488 0.00087133 498.25612294800106 35.563 0.39311 31.37 31.177 31.57 -4.1928 59 24 3 0 0 0 0.34999 1 20723 20723 14.838 0.93222 1 35950000 + 9903 17700 6878 7012 11302 11302 -0.0003424254762194323 ESILGSIPLL 10 Unmodified _ESILGSIPLL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.777099609375 2 521.313158 1040.61176 0.38695 0.00020172 0.57213 0.00029826 0.95909 0.00049999 521.3133997893133 87.19 0.22659 86.686 86.585 86.812 -0.50423 13 8 2 0 0 0 0.23227 1 47737 47737 10.824 0 1 377160 9904 5560 6879 7013 11303 11303 0.09308066934340786 ESKVQPLQTL 10 Unmodified _ESKVQPLQTL_ 0 0 0 ENST00000564690.1_1_16:71322735-71323314:-|nuORF ENST00000564690.1_1_16:71322735-71323314:-|nuORF ENST00000564690.1_1_16:71322735-71323314:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5511474609375 3 381.552039 1141.63429 NaN NaN NaN NaN NaN NaN NaN 21.857 1 19.123 18.623 19.623 -2.7348 0 0 0 0.81803 1 11732 11732 11.518 0 1 9905 15392 6880 7014 11304 11304 0.06913666331956847 ESLAYNTFSI 10 Unmodified _ESLAYNTFSI_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.3120727539062 2 572.779679 1143.5448 0.38359 0.00021971 0.61594 0.0003528 0.99953 0.00057251 572.7810796439237 50.347 0.32249 50.347 50.134 50.456 0 33 14 3 0 0 0 0.22327 1 27703 27703 19.257 0 1 2866200 9906 5491 6881 7015 11305 11305 -0.021225883474244256 ESLEQYFY 8 Unmodified _ESLEQYFY_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7406616210938 2 539.740022 1077.46549 0.24166 0.00013043 0.93772 0.00050612 1.1794 0.00063656 539.740386849314 76.703 0.40028 76.703 76.491 76.892 0 46 16 4 0 0 0 0.55032 1 42696 42696 30.225 7.0764 1 5637100 9907 3755 6882 7016 11306 11306 -0.07014235301562621 ESLIMDWW 8 Unmodified _ESLIMDWW_ 0 0 0 ENST00000432242.5_1_2:98833411-98885811:+|nuORF;ENST00000448638.5_1_2:98797652-98853199:+|nuORF;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B ENST00000432242.5_1_2:98833411-98885811:+|nuORF ENST00000432242.5_1_2:98833411-98885811:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2469482421875 2 540.24696 1078.47937 NaN NaN NaN NaN NaN NaN NaN 13.092 1 13.101 12.601 13.601 0.0096512 0 0 0 0.97444 1 6452 6452 0.69038 0 1 9908 7788 6883 7017 11307 11307 -0.05673281074132319 ESLLFQISFF 10 Unmodified _ESLLFQISFF_ 0 0 0 ENST00000392845.7_1_3:155560378-155571161:-|nuORF ENST00000392845.7_1_3:155560378-155571161:-|nuORF ENST00000392845.7_1_3:155560378-155571161:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 616.3525390625 2 615.823889 1229.63323 0.33982 0.00020927 0.070909 4.3667E-05 0.41073 0.00025294 616.325043653464 98.69 0.042603 92.514 92.478 92.52 -6.1757 4 2 2 0 0 0 0.22489 1 65495 65495 13.042 0 1 8318300 9909 12683 6884 7018 11308 11308 0.02759451963038373 ESLRRPFD 8 Unmodified _ESLRRPFD_ 0 0 0 REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18 REV__nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2671508789062 2 510.267073 1018.51959 -0.3647 -0.0001861 0.7474 0.00038138 0.3827 0.00019528 510.2674039912308 34.477 0.24895 34.477 34.365 34.614 0 32 12 4 0 0 0 0.52622 1 18147 18147 32.305 8.2849 1 14365000 + 9910 18381 6885 7019 11309 11309 0.011074016406610099 ESLVKSSS 8 Unmodified _ESLVKSSS_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.7218627929688 2 418.721633 835.428712 NaN NaN NaN NaN NaN NaN NaN 21.621 1 21.649 21.149 22.149 0.028357 0 0 0 0.97444 1 10978 10978 1.8442 0 1 + 9911 21434 6886 7020 11310 11310 0.004415128725327122 ESMWRFSF 8 Unmodified _ESMWRFSF_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2470092773438 2 545.244752 1088.47495 NaN NaN NaN NaN NaN NaN NaN 32.625 1 32.655 32.155 33.155 0.029743 0 0 0 0.93587 1 17135 17135 13.508 1.8676 1 9912 8198 6887 7021 11311 11311 -0.06574745497027834 ESNDLDPGF 9 Unmodified _ESNDLDPGF_ 0 0 0 nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1 nc|ENSG00000165671|Q96L73-2|NSD1 nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2120971679688 2 497.211629 992.408705 0.23887 0.00011877 -0.12178 -6.0552E-05 0.11709 5.8216E-05 497.2114145592671 37.32 0.29179 37.32 37.117 37.409 0 24 14 2 0 0 0 0.54444 1 19889 19889 4.756 0 1 2413300 9913 7372 6888 7022 11312 11312 -0.08780282858094779 ESNLHLQWM 9 Unmodified _ESNLHLQWM_ 0 0 0 REV__ENST00000423021.2_1_9:5112501-5112846:+|nuORF REV__ENST00000423021.2_1_9:5112501-5112846:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5183715820312 3 386.518453 1156.53353 1.5148 0.0005855 -0.49831 -0.00019261 1.0165 0.00039289 386.5182507908144 37.875 0.63615 33.507 33.144 33.78 -4.3689 79 38 3 0 0 0 0.49272 1 22136 22136 4.897 0 1 10013000 + 9914 26865 6889 7023 11313 11313 -0.03847688922564885 ESNLHLQWM 9 Unmodified _ESNLHLQWM_ 0 0 0 REV__ENST00000423021.2_1_9:5112501-5112846:+|nuORF REV__ENST00000423021.2_1_9:5112501-5112846:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.8806457519531 3 386.518453 1156.53353 1.5148 0.0005855 -0.49831 -0.00019261 1.0165 0.00039289 386.5182507908144 37.875 0.63615 33.507 33.144 33.78 -4.3689 79 38 3 0 0 0 0.20883 1 22448 22448 8.1555 7.0841 1 10013000 + 9915 26865 6889 7023 11314 11314 -0.03847688922564885 ESNPSVREF 9 Unmodified _ESNPSVREF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.8073120117188 2 532.753995 1063.49344 1.3283 0.00070766 0.44897 0.00023919 1.7773 0.00094685 532.753916332954 33.786 0.37376 29.801 29.572 29.946 -3.9853 46 20 3 0 0 0 0.1318 1 19275 19275 34.932 14.478 1 12985000 9916 4309 6890 7024 11315 11315 -0.03576912321477721 ESNSLALVY 9 Unmodified _ESNSLALVY_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 995.5050048828125 1 995.504403 994.497126 0.24185 0.00024076 -0.17776 -0.00017696 0.064089 6.3801E-05 995.505172549469 60.78 0.37489 60.78 60.625 60.999 0 37 15 3 0 0 0 0.08691 2 33961 33856;33961 36.127 10.728 1 3391500 9917 1462 6891 7025 11316;11317 11317 -0.00034242547633311915 ESNSLALVY 9 Unmodified _ESNSLALVY_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2561645507812 2 498.25584 994.497126 0.57938 0.00028868 1.5262 0.00076043 2.1056 0.0010491 498.25637370774905 60.828 0.48878 60.828 60.581 61.069 0 38 20 3 0 0 0 0.32871 1 33966 33966 15.847 6.4997 1 6209800 9918 1462 6891 7025 11318 11318 -0.00034242547633311915 ESPAPGCSF 9 Carbamidomethyl (C) _ESPAPGC(Carbamidomethyl (C))SF_ ESPAPGC(1)SF ESPAPGC(55)SF 0 1 0 ENST00000524517.5_1_10:77098119-77118447:+|nuORF ENST00000524517.5_1_10:77098119-77118447:+|nuORF ENST00000524517.5_1_10:77098119-77118447:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.3887329101562 1 951.387658 950.380382 -0.29266 -0.00027844 0.17619 0.00016762 -0.11648 -0.00011081 951.3879755301115 45.668 0.24043 45.668 45.527 45.768 0 22 11 3 0 0 0 0.031062 1 24877 24877 54.774 14.816 1 6192600 9919 14778 6892 7026 11319 11319 988 -0.09679304039013914 ESPASFLNF 9 Unmodified _ESPASFLNF_ 0 0 0 nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000175354|ENST00000309660|PTPN2;ENSG00000196396|ENST00000371621|PTPN1 nc|ENSG00000175354|P17706-3|PTPN2;ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2431335449219 2 506.242732 1010.47091 0.52372 0.00026513 0.1671 8.4591E-05 0.69081 0.00034972 506.242716790268 75.272 0.41646 75.272 75.06 75.476 0 62 23 4 0 0 0 0.49272 1 41806 41806 7.9102 0.62092 1 3942000 9920 9810;8514 6893 7027 11320 11320 -0.03390511719089773 ESPMERNS 8 Unmodified _ESPMERNS_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2063903808594 2 475.205824 948.397095 -0.27335 -0.0001299 0.92192 0.0004381 0.64857 0.0003082 475.20640736786726 55.272 0.3129 55.272 55.101 55.414 0 22 13 2 0 0 0 0.64853 1 30697 30697 21.747 0 1 3862200 + 9921 17911 6894 7028 11321 11321 -0.07916803153068486 ESPPGFVN 8 Unmodified _ESPPGFVN_ 0 0 0 ENST00000335793.3_1_17:71280809-71281388:-|nuORF ENST00000335793.3_1_17:71280809-71281388:-|nuORF ENST00000335793.3_1_17:71280809-71281388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 846.3998413085938 1 846.399209 845.391933 0.062646 5.3023E-05 0.3713 0.00031427 0.43394 0.00036729 846.3994533009628 75.748 0.35294 75.271 75.104 75.457 -0.47714 27 15 2 0 0 0 0.75262 1 41417 41417 12.532 3.1841 1 2449900 9922 11903 6895 7029 11322 11322 -0.036947389533793284 ESPPVYSGYY 10 Unmodified _ESPPVYSGYY_ 0 0 0 ENSG00000225968|ENST00000424383|ELFN1 ENSG00000225968|ENST00000424383|ELFN1 ENSG00000225968|ENST00000424383|ELFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2606201171875 2 581.258579 1160.50261 0.3779 0.00021966 -0.77157 -0.00044848 -0.39368 -0.00022883 581.2591539364527 51.621 0.21387 51.621 51.475 51.689 0 11 9 2 0 0 0 0.52888 1 28523 28523 14.838 2.3067 1 1758700 9923 10587 6896 7030 11323 11323 -0.07122563755797273 ESPVLPEYNVQ 11 Unmodified _ESPVLPEYNVQ_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.318359375 2 637.816793 1273.61903 -0.046124 -2.9418E-05 0.80361 0.00051256 0.75749 0.00048314 637.8168129007432 65.341 0.35765 65.341 65.117 65.475 0 21 13 2 0 0 0 0.69838 1 36427 36427 8.7454 0.58988 1 588960 + 9924 21279 6897 7031 11324 11324 -0.0068324525591378915 ESPYVLGRLL 10 Unmodified _ESPYVLGRLL_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.28173828125 2 573.829506 1145.64446 0.87778 0.00050369 1.9705 0.0011307 2.8482 0.0016344 573.8319221823455 81.667 0.25151 81.172 81.062 81.313 -0.4952 22 9 3 0 0 0 0.23693 1 44733 44733 6.2058 0.9089 1 928980 + 9925 22177 6898 7032 11325 11325 0.07746274057194569 ESQFLLSL 8 Unmodified _ESQFLLSL_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61439047-61463244:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7554626464844 2 468.755475 935.496398 1.1364 0.00053267 0.87774 0.00041144 2.0141 0.00094412 468.7553381623739 100.25 0.16019 94.079 93.996 94.157 -6.1757 23 9 3 0 0 0 0.36356 1 66978 66978 48.346 3.9388 1 61977000 9926 3126 6899 7033 11326 11326 0.026069628033383196 ESQTAEPF 8 Unmodified _ESQTAEPF_ 0 0 0 REV__FBXO38|p.R1070Q|1|0.17|ENSG00000145868|chr5:148440462-148440462|G/A|missense_variant REV__FBXO38|p.R1070Q|1|0.17|ENSG00000145868|chr5:148440462-148440462|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4053344726562 1 908.399603 907.392327 -0.10219 -9.2827E-05 -0.29747 -0.00027022 -0.39966 -0.00036305 908.399507047724 48.202 0.32325 48.202 48.071 48.394 0 34 15 3 0 0 0 0.57045 1 26423 26423 28.487 5.3384 1 8430000 + 9927 29346 6900 7034 11327 11327 -0.06507364024173512 ESRGSARLDSD 11 Unmodified _ESRGSARLDSD_ 0 0 0 REV__ENSG00000214842|ENST00000399080|RAD51AP2 REV__ENSG00000214842|ENST00000399080|RAD51AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2889404296875 2 596.781273 1191.54799 0.8855 0.00052845 -2.9168 -0.0017407 -2.0313 -0.0012122 596.7764417345662 50.473 0.57819 50.424 50.23 50.808 -0.048828 96 28 5 0 0 0 0.65846 1 27408 27408 8.1555 0 1 15282000 + 9928 24325 6901 7035 11328 11328 -0.04011945240722525 ESRKLEKSEDE 11 Unmodified _ESRKLEKSEDE_ 0 0 0 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.5554809570312 3 450.556289 1348.64704 0.59513 0.00026814 -1.4295 -0.00064408 -0.83439 -0.00037594 450.5557260649692 28.29 0.18945 28.32 28.212 28.401 0.029564 19 7 3 0 0 0 0.67937 1 14718 14718 3.134 0.50272 1 5420400 9929 3819 6902 7036 11329 11329 -0.013339670664436198 ESRLKPPAYTF 11 Unmodified _ESRLKPPAYTF_ 0 0 0 REV__ENSG00000080608|ENST00000397885|PUM3 REV__ENSG00000080608|ENST00000397885|PUM3 MSMS AL20221201_MKP_PDAC_01 4 654.846435546875 2 654.85097 1307.68739 NaN NaN NaN NaN NaN NaN NaN 75.299 1 69.123 68.623 69.623 -6.1757 0 0 0 0.39541 1 49245 49245 28.495 8.08 1 + 9930 17671 6903 7037 11330 11330 0.045850441146058074 ESRNQHQYQ 9 Unmodified _ESRNQHQYQ_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.1836853027344 3 397.183009 1188.5272 -0.069607 -2.7647E-05 3.3586 0.001334 3.289 0.0013063 397.18392583254735 18.441 0.1277 18.447 18.386 18.514 0.0060482 11 5 3 0 0 0 0.52844 1 9357 9357 6.1918 1.7857 1 991810 + 9931 21725 6904 7038 11331 11331 -0.05952490829713497 ESRNQHQYQ 9 Unmodified _ESRNQHQYQ_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 397.183009 1188.5272 -0.069607 -2.7647E-05 3.3586 0.001334 3.289 0.0013063 397.18392583254735 18.441 0.1277 18.447 18.386 18.514 0.0060482 -0.0094187 0.00012757 NaN 6.1918 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 991810 + 9932 21725 6904 7038 -0.05952490829713497 ESRQEGSEGDE 11 Unmodified _ESRQEGSEGDE_ 0 0 0 REV__EPB41L1|p.G463E|1|0.22|ENSG00000088367|chr20:36194299-36194299|G/A|missense_variant REV__EPB41L1|p.G463E|1|0.22|ENSG00000088367|chr20:36194299-36194299|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 408.1665649414062 3 408.165461 1221.47455 NaN NaN NaN NaN NaN NaN NaN 62.271 1 56.095 55.595 56.595 -6.1757 0 0 0 0.92939 1 40166 40166 5.8681 0.13629 1 + 9933 29339 6905 7039 11332 11332 -0.1273253847380147 ESRSRGNVQ 9 Unmodified _ESRSRGNVQ_ 0 0 0 ENSG00000137825|ENST00000260386|ITPKA ENSG00000137825|ENST00000260386|ITPKA ENSG00000137825|ENST00000260386|ITPKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2589111328125 2 516.762686 1031.51082 1.1277 0.00058276 -0.24046 -0.00012426 0.88725 0.0004585 516.7629016168298 50.141 0.60517 44.602 44.393 44.998 -5.5391 163 39 5 0 0 0 0.46501 1 31666 31666 9.3831 0.035688 1 746240000 9934 4977 6906 7040 11333 11333 -0.003675719958209811 ESSGKLNIPTD 11 Unmodified _ESSGKLNIPTD_ 0 0 0 nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2 nc|ENSG00000164308|Q6P179-3|ERAP2 nc|ENSG00000164308|Q6P179-3|ERAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.793701171875 2 580.793318 1159.57208 -0.43527 -0.0002528 0.7734 0.00044918 0.33813 0.00019638 580.7937032446607 26.901 0.39743 26.901 26.614 27.012 0 29 18 3 0 0 0 0.30985 1 13836 13836 26.268 5.8145 1 2655900 9935 7177 6907 7041 11334 11334 -0.001321048070622055 ESSILCCDEF 10 Unmodified _ESSILCCDEF_ 0 0 0 REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.4871520996094 3 382.48783 1144.44166 NaN NaN NaN NaN NaN NaN NaN 86.722 1 86.219 85.719 86.719 -0.50318 0 0 0 0.98914 1 47448 47448 0.77653 0 1 + 9936 27497 6908 7042 11335 11335 -0.12478160121918336 ESSPMKEVYN 10 Unmodified _ESSPMKEVYN_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.0628967285156 3 395.181506 1182.52269 NaN NaN NaN NaN NaN NaN NaN 16.862 1 16.862 16.362 17.362 0 0 0 0 1.0024 1 8263 8263 0.13989 0 1 + 9937 24017 6909 7043 11336 11336 -0.06127136087479812 ESSSFLLNSL 10 Unmodified _ESSSFLLNSL_ 0 0 0 ENST00000522413.5_2_8:27468084-27471779:-|nuORF ENST00000522413.5_2_8:27468084-27471779:-|nuORF ENST00000522413.5_2_8:27468084-27471779:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.7511596679688 2 548.779679 1095.5448 0.82597 0.00045327 -0.2138 -0.00011733 0.61217 0.00033594 548.7796297713271 39.113 0.37015 34.662 34.488 34.858 -4.4509 61 23 3 0 0 0 0.23057 1 23164 23164 13.042 2.2185 1 53844000 9938 14754 6910 7044 11337 11337 0.0008541165257156536 ESSSLSDTTTY 11 Unmodified _ESSSLSDTTTY_ 0 0 0 nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B nc|ENSG00000114541|Q9Y2L6-2|FRMD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7564086914062 2 595.756598 1189.49864 -0.41124 -0.000245 0.070951 4.227E-05 -0.34029 -0.00020273 595.756812524378 56.132 0.38776 56.132 55.934 56.322 0 43 18 4 0 0 0 0.63851 1 31276 31276 9.3831 1.7742 1 11220000 9939 3045 6911 7045 11338 11338 -0.08852698040163887 ESSSSRTETST 11 Unmodified _ESSSSRTETST_ 0 0 0 REV__nc|ENSG00000100784|O75582-3|RPS6KA5 REV__nc|ENSG00000100784|O75582-3|RPS6KA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.2574462890625 2 586.257296 1170.50004 NaN NaN NaN NaN NaN NaN NaN 16.88 1 16.885 16.385 17.385 0.0050564 0 0 0 0.9435 1 8485 8485 0 0 1 + 9940 18108 6912 7046 11339 11339 -0.07839063951405478 ESSTQNYSSVI 11 Unmodified _ESSTQNYSSVI_ 0 0 0 REV__nc|ENSG00000204406|Q9P267-2|MBD5 REV__nc|ENSG00000204406|Q9P267-2|MBD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5216064453125 3 405.522697 1213.54626 NaN NaN NaN NaN NaN NaN NaN 30.942 1 30.942 30.442 31.442 0 0 0 0 0.93933 1 16096 16096 1.2148 0.021489 1 + 9941 24166 6913 7047 11340 11340 -0.05196999049326223 ESSYDEDSDEE 11 Unmodified _ESSYDEDSDEE_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.7174682617188 2 652.717866 1303.42118 0.5826 0.00038028 -1.1181 -0.00072982 -0.53552 -0.00034954 652.7171956597526 68.122 0.26444 67.64 67.498 67.763 -0.48219 21 12 3 0 0 0 0.68427 1 37224 37224 5.7319 1.7875 1 2857000 + 9942 17908 6914 7048 11341 11341 -0.21839380767005423 ESSYDEDSDEE 11 Unmodified _ESSYDEDSDEE_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.481201171875 3 435.481003 1303.42118 0.58298 0.00025388 -0.46644 -0.00020313 0.11654 5.0752E-05 435.4805704041077 68.126 0.26463 67.644 67.518 67.783 -0.48218 17 12 2 0 0 0 0.73115 1 37254 37254 0.45452 0 1 2044300 + 9943 17908 6914 7048 11342 11342 -0.21839380767005423 ESSYDEDSDEE 11 Unmodified _ESSYDEDSDEE_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 652.717866 1303.42118 0.5826 0.00038028 -1.1181 -0.00072982 -0.53552 -0.00034954 652.7171956597526 68.122 0.26444 67.64 67.498 67.763 -0.48219 0.065283 -0.0001827 NaN 5.7319 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2857000 + 9944 17908 6914 7048 -0.21839380767005423 ESTEESVEVF 10 Unmodified _ESTEESVEVF_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2567749023438 2 578.256234 1154.49791 -0.015372 -8.8889E-06 2.1466 0.0012413 2.1312 0.0012324 578.257697873001 30.984 0.23865 30.984 30.852 31.091 0 25 11 3 0 0 0 0.31022 1 16112 16112 26.884 15.243 1 3328600 9945 8231 6915 7049 11343 11343 -0.07315492689212988 ESVIRPENNQV 11 Unmodified _ESVIRPENNQV_ 0 0 0 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8915100097656 3 428.889603 1283.64698 NaN NaN NaN NaN NaN NaN NaN 64.769 1 64.769 64.269 65.269 7.6294E-06 0 0 0 0.94201 1 35476 35476 0.36667 0 1 9946 7641 6916 7050 11344 11344 0.016500777241844844 ESVSHLISY 9 Unmodified _ESVSHLISY_ 0 0 0 nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 nc|ENSG00000160691|P29353-5|SHC1 nc|ENSG00000160691|P29353-5|SHC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7617797851562 2 517.761289 1033.50803 NaN NaN NaN NaN NaN NaN NaN 45.96 1 45.96 45.46 46.46 0 0 0 0 0.096036 1 25093 25093 44.407 8.3628 1 9947 6743 6917 7051 11345 11345 -0.007388401733123828 ESVSWLCHF 9 Unmodified _ESVSWLCHF_ 0 0 0 ENST00000474490.1_1_3:139236319-139236406:-|nuORF ENST00000474490.1_1_3:139236319-139236406:-|nuORF ENST00000474490.1_1_3:139236319-139236406:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2525024414062 2 554.250034 1106.48552 NaN NaN NaN NaN NaN NaN NaN 82.812 1 82.314 81.814 82.814 -0.49751 0 0 0 0.7453 1 45333 45333 7.9102 1.187 1 9948 13940 6918 7052 11346 11346 -0.06346762842599674 ESVVLIPKS 9 Unmodified _ESVVLIPKS_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2243041992188 2 486.292225 970.569897 0.53258 0.00025899 1.3602 0.00066143 1.8927 0.00092042 486.2918667913088 53.33 0.40529 52.878 52.682 53.087 -0.45173 63 19 4 0 0 0 0.18882 1 28814 28814 10.824 0.75 1 26084000 9949 10553 6919 7053 11347 11347 0.08343511245823265 ESVYEHKY 8 Unmodified _ESVYEHKY_ 0 0 0 REV__ENSG00000164123|ENST00000434826|C4orf45 REV__ENSG00000164123|ENST00000434826|C4orf45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1653442382812 3 352.166185 1053.47673 -0.34808 -0.00012258 -0.1759 -6.1945E-05 -0.52398 -0.00018453 352.1660221245843 24.24 0.26859 24.24 24.099 24.368 0 57 17 4 0 0 0 0.76266 1 12341 12341 13.042 0 1 17877000 + 9950 21875 6920 7054 11348 11348 -0.04787413207418467 ESYEPHAP 8 Unmodified _ESYEPHAP_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2036743164062 2 465.203607 928.392661 0.51489 0.00023953 -0.35383 -0.0001646 0.16106 7.4924E-05 465.2037512640177 52.523 0.32581 52.523 52.376 52.702 0 29 14 3 0 0 0 0.61462 1 29060 29060 24.674 2.9272 1 4360500 9951 10747 6921 7055 11349 11349 -0.07439944304337587 ESYNVYSF 8 Unmodified _ESYNVYSF_ 0 0 0 L1ME2_dup8015|chr10:47985816-47986226:-|1.261955737104434|0.2483043414678888|2.35|169.0|17|1|anti-sense L1ME2_dup8015|chr10:47985816-47986226:-|1.261955737104434|0.2483043414678888|2.35|169.0|17|1|anti-sense L1ME2_dup8015|chr10:47985816-47986226:-|1.261955737104434|0.2483043414678888|2.35|169.0|17|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7203369140625 2 504.71909 1007.42363 0.17073 8.6172E-05 0.63257 0.00031927 0.8033 0.00040544 504.71939333037966 70.806 0.37012 70.806 70.565 70.935 0 65 40 2 0 0 0 0.72953 1 39378 39378 14.582 2.0501 1 3734100 9952 15956 6922 7056 11350 11350 -0.07978790990091511 ESYRTGDPIAF 11 Unmodified _ESYRTGDPIAF_ 0 0 0 ENST00000490483.5_3_19:36501916-36503966:-|nuORF ENST00000490483.5_3_19:36501916-36503966:-|nuORF ENST00000490483.5_3_19:36501916-36503966:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.3001708984375 2 628.30131 1254.58807 -0.41091 -0.00025818 -0.52466 -0.00032964 -0.93557 -0.00058782 628.3008847309522 26.548 0.22965 26.548 26.428 26.658 0 18 10 2 0 0 0 0.71618 1 13629 13629 2.7352 0.67545 1 1658600 9953 14258 6923 7057 11351 11351 -0.029043985701491692 ESYYEEDES 9 Unmodified _ESYYEEDES_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.70654296875 2 575.706573 1149.39859 NaN NaN NaN NaN NaN NaN NaN 1.438 1 1.438 0.93795 1.938 0 0 0 0 0.8622 1 702 702 0 0 1 + 9954 24466 6924 7058 11352 11352 -0.17012935373986693 ETALFRHAALL 11 Unmodified _ETALFRHAALL_ 0 0 0 REV__ENSG00000158158|ENST00000377075|CNNM4 REV__ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.5710754394531 3 414.571545 1240.69281 0.36922 0.00015307 -0.35173 -0.00014582 0.017491 7.2512E-06 414.57129793994426 36.324 0.18161 36.324 36.249 36.43 0 13 8 3 0 0 0 0.69155 1 19268 19268 5.0475 1.1712 1 1772700 + 9955 21420 6925 7059 11353 11353 0.08208767697078656 ETAPEETEGPD 11 Unmodified _ETAPEETEGPD_ 0 0 0 ENSG00000156299|ENST00000541036|TIAM1;nc|ENSG00000156299|Q13009-2|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7428588867188 2 587.740948 1173.46734 0.055665 3.2717E-05 0.1204 7.0765E-05 0.17607 0.00010348 587.7409732339116 39.926 0.20045 39.926 39.792 39.993 0 22 9 3 0 0 0 0.65846 1 21435 21435 8.1555 0.24537 1 2378300 9956 6446 6926 7060 11354 11354 -0.11245271074267293 ETAVKELSY 9 Unmodified _ETAVKELSY_ 0 0 0 CON__Q1A7A4;C5|p.P343Tfs*34|1|0.53|ENSG00000106804|chr9:121023493-121023494|-/T|frameshift_variant;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.27001953125 2 520.268947 1038.52334 0.47577 0.00024753 0.23171 0.00012055 0.70748 0.00036808 520.2692854185983 38.157 0.53901 38.157 37.724 38.263 0 47 27 3 0 0 0 0.06294 1 20344 20344 41.84 5.7126 1 51627000 + 9957 186;2461 6927 7061 11355 11355 0.005620266238793192 ETAVKELSY 9 Unmodified _ETAVKELSY_ 0 0 0 CON__Q1A7A4;C5|p.P343Tfs*34|1|0.53|ENSG00000106804|chr9:121023493-121023494|-/T|frameshift_variant;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4;ENSG00000106804|ENST00000223642|C5 CON__Q1A7A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2691650390625 2 520.268947 1038.52334 0.69733 0.0003628 1.1863 0.00061718 1.8836 0.00097998 520.2696305316368 43.891 0.50072 39.127 38.772 39.273 -4.7648 77 31 3 0 0 0 0.047788 1 26624 26624 45.7 15.063 1 69408000 + 9958 186;2461 6927 7061 11356 11356 0.005620266238793192 ETDEDDEAF 9 Unmodified _ETDEDDEAF_ 0 0 0 ENSG00000204815|ENST00000377540|ODAD4 ENSG00000204815|ENST00000377540|ODAD4 ENSG00000204815|ENST00000377540|ODAD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.6937255859375 2 535.693466 1069.37238 1.1919 0.00063847 -0.41796 -0.0002239 0.7739 0.00041457 535.6930434120783 90.569 0.59896 84.394 84.156 84.755 -6.1757 77 35 3 0 0 0 0.49272 1 59913 59913 7.9102 0 1 21590000 9959 10327 6928 7062 11357 11357 -0.15953204545485278 ETDESRYNL 9 Unmodified _ETDESRYNL_ 0 0 0 REV__nc|ENSG00000108176|Q9UKB3-2|DNAJC12 REV__nc|ENSG00000108176|Q9UKB3-2|DNAJC12 MSMS AL20221201_MKP_PDAC_01 4 563.7529907226562 2 563.754192 1125.49383 NaN NaN NaN NaN NaN NaN NaN 69.975 1 63.799 63.299 64.299 -6.1757 0 0 0 0.54558 1 45704 45704 20.454 6.9457 1 + 9960 18596 6929 7063 11358 11358 -0.06389537392283273 ETDGFTHSF 9 Unmodified _ETDGFTHSF_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7203369140625 2 520.719621 1039.42469 0.79498 0.00041396 -0.076597 -3.9886E-05 0.71839 0.00037408 520.7196526968813 43.518 0.37219 38.753 38.595 38.967 -4.7648 50 23 3 0 0 0 0.16226 1 26507 26507 26.884 0.54238 1 18349000 + 9961 21226 6930 7064 11359 11359 -0.0934457662119712 ETDPAYQNI 9 Unmodified _ETDPAYQNI_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7437744140625 2 525.740554 1049.46655 0.37362 0.00019643 2.334 0.0012271 2.7076 0.0014235 525.7421813453592 87.895 0.40729 87.39 87.195 87.602 -0.50423 42 18 3 0 0 0 0.30562 1 48024 48024 16.942 1.0951 1 3078200 9962 9420 6931 7065 11360 11360 -0.05620020932656189 ETEECYSFNLK 11 Unmodified _ETEECYSFNLK_ 0 0 0 REV__ENSG00000214102|ENST00000397541|WEE2 REV__ENSG00000214102|ENST00000397541|WEE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8677673339844 3 454.867587 1361.58093 NaN NaN NaN NaN NaN NaN NaN 4.2968 1 4.2905 3.7905 4.7905 -0.0062971 0 0 0 0.94313 1 2176 2176 0.073264 0 1 + 9963 24307 6932 7066 11361 11361 -0.08539499232870185 ETELKKRK 8 Unmodified _ETELKKRK_ 0 0 0 ENSG00000136819|ENST00000372447|C9orf78;ENST00000461762.5_1_9:132591268-132595829:-|nuORF ENSG00000136819|ENST00000372447|C9orf78 ENSG00000136819|ENST00000372447|C9orf78 MSMS AL20221201_MKP_PDAC_01 4 516.31689453125 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 108.16 1 101.99 101.49 102.49 -6.1757 0 0 0 0.97444 1 72302 72302 0.69038 0 1 9964 4860 6933 7067 11362 11362 0.09941120742928433 ETENEDNTNR 10 Unmodified _ETENEDNTNR_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8384399414062 3 407.837456 1220.49054 -0.033617 -1.371E-05 1.9618 0.00080008 1.9281 0.00078637 407.83808376749016 37.409 0.19716 37.409 37.277 37.475 0 19 10 3 0 0 0 0.69377 1 19902 19902 1.7423 0.14999 1 3637700 9965 6155;16276 6934 7068 11363 11363 -0.11088832236941926 ETETALAEII 10 Unmodified _ETETALAEII_ 0 0 0 nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;KMT2E|p.R802Kfs*8|1|0.15|ENSG00000005483|chr7:105105640-105105641|-/A|frameshift_variant;nc|ENSG00000005483|Q8IZD2-4|KMT2E;nc|ENSG00000005483|Q8IZD2-8|KMT2E nc|ENSG00000005483|Q8IZD2-6|KMT2E nc|ENSG00000005483|Q8IZD2-6|KMT2E MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.7575073242188 2 545.287337 1088.56012 1.1931 0.00065057 -3.8266 -0.0020866 -2.6336 -0.001436 545.285756514353 88.228 0.35145 82.052 81.889 82.24 -6.1757 26 19 2 0 0 0 0.22327 1 58202 58202 13.906 2.2658 1 12704000 9966 311 6935 7069 11364 11364 0.019382784497793182 ETFGHLLSI 9 Unmodified _ETFGHLLSI_ 0 0 0 ENSG00000278129|ENST00000621650|ZNF8 ENSG00000278129|ENST00000621650|ZNF8 ENSG00000278129|ENST00000621650|ZNF8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2456970214844 2 508.7742 1015.53385 0.5373 0.00027337 -1.7769 -0.00090402 -1.2396 -0.00063066 508.7720277087358 28.463 0.45671 25.315 25.077 25.534 -3.1482 52 23 3 0 0 0 0.1474 1 15850 15850 15.847 1.9411 1 7987100 9967 10930 6936 7070 11365 11365 0.026700540689716945 ETFKEQGNAY 10 Unmodified _ETFKEQGNAY_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7718505859375 2 593.772385 1185.53022 -0.33621 -0.00019963 -0.52376 -0.00031099 -0.85997 -0.00051063 593.7720471105575 23.74 0.17295 23.74 23.659 23.832 0 13 8 2 0 0 0 0.68719 1 12110 12110 4.3292 0.73274 1 513260 9968 7736 6937 7071 11366 11366 -0.0551266049556034 ETFKLAQTY 9 Unmodified _ETFKLAQTY_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7843017578125 2 550.784764 1099.55498 NaN NaN NaN NaN NaN NaN NaN 45.295 1 45.295 44.795 45.795 0 0 0 0 0.54558 1 24681 24681 20.454 11.071 1 9969 852 6938 7072 11367 11367 0.009180193778320245 ETFLYTFSPHF 11 Unmodified _ETFLYTFSPHF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MSMS AL20221201_MKP_PDAC_01 4 463.5573120117188 3 463.555561 1387.64485 NaN NaN NaN NaN NaN NaN NaN 48.601 1 43.205 42.705 43.705 -5.3961 0 0 0 0.73964 1 30290 30290 14.957 5.1929 1 9970 16120 6939 7073 11368 11368 -0.033463510136471086 ETFRRMWKWLQ 11 Unmodified _ETFRRMWKWLQ_ 0 0 0 ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000119547|ENST00000491143|ONECUT2 ENSG00000169856|ENST00000305901|ONECUT1 ENSG00000169856|ENST00000305901|ONECUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.9446411132812 3 527.610006 1579.80819 0.93497 0.0004933 0.95969 0.00050634 1.8947 0.00099964 527.9444991162179 42.494 0.26174 42.494 42.382 42.644 0 25 12 3 0 0 0 0.73114 1 23030 23030 1.3296 0.11481 1 3937400 9971 3446 6940 7074 11369 11369 0.04147548556420588 ETGHPSWSLM 10 Unmodified _ETGHPSWSLM_ 0 0 0 ENST00000416649.6_1_3:48711345-48711510:-|nuORF ENST00000416649.6_1_3:48711345-48711510:-|nuORF ENST00000416649.6_1_3:48711345-48711510:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7571411132812 2 572.758223 1143.50189 -0.20645 -0.00011825 -1.6025 -0.00091786 -1.809 -0.0010361 572.7572459027925 31.224 0.25965 31.254 31.109 31.368 0.030104 18 10 2 0 0 0 0.67033 1 16361 16361 6.2058 0.97511 1 2223200 9972 13050 6941 7075 11370 11370 -0.06411681676490844 ETGHPSWSLM 10 Unmodified _ETGHPSWSLM_ 0 0 0 ENST00000416649.6_1_3:48711345-48711510:-|nuORF ENST00000416649.6_1_3:48711345-48711510:-|nuORF ENST00000416649.6_1_3:48711345-48711510:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7581176757812 2 572.758223 1143.50189 1.4835 0.00084971 -1.3943 -0.00079861 0.089214 5.1098E-05 572.757376489293 33.912 0.66002 29.927 29.507 30.167 -3.9853 77 36 4 0 0 0 0.44373 1 19408 19408 19.257 5.7491 1 39111000 9973 13050 6941 7075 11371 11371 -0.06411681676490844 ETGNSNENI 9 Unmodified _ETGNSNENI_ 0 0 0 nc|ENSG00000172340|Q96I99-2|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2115173339844 2 489.21216 976.409768 0.80302 0.00039285 -2.0735 -0.0010144 -1.2705 -0.00062152 489.21102414939446 67.959 0.36012 67.477 67.255 67.615 -0.48218 29 16 3 0 0 0 0.56345 1 37088 37088 3.5965 0.70727 1 2534900 9974 16383 6942 7076 11372 11372 -0.07938068489193029 ETGNSNENI 9 Unmodified _ETGNSNENI_ 0 0 0 nc|ENSG00000172340|Q96I99-2|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 489.21216 976.409768 0.38608 0.00018888 -1.6166 -0.00079086 -1.2305 -0.00060198 489.21144982973516 67.426 0.29282 67.426 67.248 67.541 0 -0.025088 0.00016297 NaN 3.5965 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2195800 9975 16383 6942 7076 -0.07938068489193029 ETGQFFHC 8 Unmodified _ETGQFFHC_ 0 0 0 REV__ENST00000261918.8_1_15:74702847-74702892:-|nuORF REV__ENST00000261918.8_1_15:74702847-74702892:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.701416015625 2 484.700177 967.385802 0.26827 0.00013003 1.4667 0.00071092 1.735 0.00084096 484.7007801897011 76.689 0.55784 76.689 76.294 76.852 0 35 22 2 0 0 0 0.80676 1 42591 42591 2.5775 0.73324 1 666080 + 9976 25008 6943 7077 11373 11373 -0.09919580456551103 ETGRAHAFL 9 Unmodified _ETGRAHAFL_ 0 0 0 ENST00000581677.1_1_18:268240-268348:+|nuORF ENST00000581677.1_1_18:268240-268348:+|nuORF ENST00000581677.1_1_18:268240-268348:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7648010253906 2 501.261791 1000.50903 0.40111 0.00020106 0.20901 0.00010477 0.61011 0.00030583 501.26191154667765 85.537 0.47315 85.537 85.295 85.768 0 41 19 3 0 0 0 0.54444 1 47352 47352 4.756 0 1 493040 9977 15564 6944 7078 11374 11374 0.008794189862214807 ETGWNCHI 8 Unmodified _ETGWNCHI_ 0 0 0 ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000585105.5_1_17:73489877-73495164:+|nuORF ENSG00000177728|ENST00000314256|TMEM94 ENSG00000177728|ENST00000314256|TMEM94 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2060852050781 2 480.205627 958.396701 1.0399 0.00049935 2.0648 0.00099153 3.1047 0.0014909 480.2065476791771 80.194 0.39934 79.705 79.533 79.932 -0.48932 27 15 2 0 0 0 0.80143 1 43889 43889 5.7604 0 1 700290 9978 8705 6945 7079 11375 11375 -0.0841617808225692 ETGWTYILY 9 Unmodified _ETGWTYILY_ 0 0 0 REV__ENST00000498309.1_1_5:132203154-132203271:+|nuORF REV__ENST00000498309.1_1_5:132203154-132203271:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8087768554688 2 573.279315 1144.54408 -0.51721 -0.0002965 -2.3749 -0.0013615 -2.8922 -0.001658 573.2779043770303 30.333 0.18024 30.333 30.222 30.402 0 14 8 2 0 0 0 0.19613 1 15779 15779 12.532 0 1 1952600 + 9979 21915 6946 7080 11376 11376 -0.022413829964762044 ETHILQHQ 8 Unmodified _ETHILQHQ_ 0 0 0 REV__ZNF517|p.R222Q|1|0.17|ENSG00000197363|chr8:144807581-144807581|G/A|missense_variant REV__ZNF517|p.R222Q|1|0.17|ENSG00000197363|chr8:144807581-144807581|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2594299316406 2 503.259248 1004.50394 NaN NaN NaN NaN NaN NaN NaN 27.614 1 27.614 27.114 28.114 0 0 0 0 0.97444 1 14232 14232 2.3027 0 1 + 9980 30143 6947 7081 11377 11377 0.0018711512361733185 ETHLKMEYEK 10 Unmodified _ETHLKMEYEK_ 0 0 0 REV__ENSG00000175899|ENST00000318602|A2M REV__ENSG00000175899|ENST00000318602|A2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 654.3197631835938 2 654.318645 1306.62274 -0.48089 -0.00031466 1.561 0.0010214 1.0801 0.00070672 654.3197943913025 21.689 0.23221 21.689 21.551 21.784 0 81 34 3 0 0 0 0.54684 1 11030 11030 13.906 1.6654 1 3871500 + 9981 22898 6948 7082 11378 11378 -0.018308987537238863 ETHLRQVF 8 Unmodified _ETHLRQVF_ 0 0 0 ENSG00000188993|ENST00000682860|LRRC66 ENSG00000188993|ENST00000682860|LRRC66 ENSG00000188993|ENST00000682860|LRRC66 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3001098632812 2 515.277441 1028.54033 -0.02307 -1.1887E-05 -1.9695 -0.0010149 -1.9926 -0.0010268 515.2761999587336 56.364 0.38779 56.364 56.247 56.635 0 25 17 2 0 0 0 8.7369 1 31308 31308 5.7604 0 1 2212900 9982 9716 6949 7083 11379 11379 0.027199920203202055 ETIAREFYN 9 Unmodified _ETIAREFYN_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MSMS AL20221201_MKP_PDAC_01 4 571.7779541015625 2 571.77747 1141.54039 NaN NaN NaN NaN NaN NaN NaN 86.913 1 80.737 80.237 81.237 -6.1757 0 0 0 0.36554 1 57299 57299 21.747 4.6338 1 9983 9547 6950 7084 11380 11380 -0.02472052770326627 ETISNLPSL 9 Unmodified _ETISNLPSL_ 0 0 0 ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;SLC26A8|p.N842Kfs*44|1|0.18|ENSG00000112053|chr6:35944287-35944288|-/T|frameshift_variant;ENSG00000112053|ENST00000490799|SLC26A8;nc|ENSG00000112053|Q96RN1-3|SLC26A8 ENST00000486155.1_1_6:35928714-35992326:-|nuORF ENST00000486155.1_1_6:35928714-35992326:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7372436523438 2 487.263665 972.512776 0.64995 0.0003167 -0.10578 -5.1542E-05 0.54417 0.00026515 487.2635967730415 66.954 0.63597 60.778 60.455 61.091 -6.1757 120 35 4 0 0 0 0.20428 1 43450 43450 22.736 3.4793 1 382620000 9984 2853 6951 7085 11381 11381 0.025420439694244124 ETIVPPIP 8 Unmodified _ETIVPPIP_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 865.5042114257812 1 865.502946 864.49567 -0.31742 -0.00027473 0.99146 0.00085811 0.67404 0.00058339 865.503873248836 58.383 0.25028 57.892 57.778 58.028 -0.49079 18 11 2 0 0 0 0.41521 1 31736 31736 42.968 0 1 1898600 + 9985 21053 6952 7086 11382 11382 0.058001681542691585 ETIWEIEYRCN 11 Unmodified _ETIWEIEYRCN_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MSMS AL20221201_MKP_PDAC_01 4 728.3320922851562 2 728.332284 1454.65001 NaN NaN NaN NaN NaN NaN NaN 92.273 1 86.098 85.598 86.598 -6.1757 0 0 0 0.93224 1 61017 61017 5.7319 0 1 + 9986 23892 6953 7087 11383 11383 -0.05912415213310851 ETIYFNLN 8 Unmodified _ETIYFNLN_ 0 0 0 ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF ENST00000477892.5_1_3:122128896-122129013:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2503967285156 2 507.250557 1012.48656 NaN NaN NaN NaN NaN NaN NaN 20.722 1 20.75 20.25 21.25 0.028357 0 0 0 0.97444 1 10495 10495 2.3027 0.24298 1 9987 14001 6954 7088 11384 11384 -0.0191822520206415 ETKPSTQHF 9 Unmodified _ETKPSTQHF_ 0 0 0 REV__ENSG00000119938|ENST00000238994|PPP1R3C REV__ENSG00000119938|ENST00000238994|PPP1R3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7658081054688 2 537.764363 1073.51417 -0.23365 -0.00012565 -0.58475 -0.00031446 -0.8184 -0.00044011 537.763894529169 24.956 0.24323 24.956 24.823 25.067 0 59 28 3 0 0 0 0.06294 1 12741 12741 41.84 11.615 1 5906100 + 9988 19221 6955 7089 11385 11385 -0.019643219418185254 ETKQPRQYF 9 Unmodified _ETKQPRQYF_ 0 0 0 ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 MSMS AL20221201_MKP_PDAC_01 4 399.8744506835938 3 399.540134 1195.59857 NaN NaN NaN NaN NaN NaN NaN 17.376 1 14.79 14.29 15.29 -2.5866 0 0 0 0.82739 1 9079 9079 2.4985 0 1 9989 1602 6956 7090 11386 11386 0.008596288749458836 ETKSLWWERR 10 Unmodified _ETKSLWWERR_ 0 0 0 nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L nc|ENSG00000144445|A0AUZ9-2|KANSL1L nc|ENSG00000144445|A0AUZ9-2|KANSL1L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.7107238769531 3 464.245721 1389.71533 0.86791 0.00040293 0.21546 0.00010003 1.0834 0.00050295 464.24579699347606 39.27 0.32263 34.819 34.675 34.997 -4.4509 45 19 3 0 0 0 0.23661 1 23239 23239 7.9454 0 1 23013000 9990 5609 6957 7091 11387 11387 0.036063670946759885 ETLAYLIEP 9 Unmodified _ETLAYLIEP_ 0 0 0 nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-6|ARMC8;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;ENST00000486832.1_1_3:137958292-137964088:+|nuORF nc|ENSG00000114098|Q8IUR7-3|ARMC8 nc|ENSG00000114098|Q8IUR7-3|ARMC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.783447265625 2 524.78169 1047.54883 1.1149 0.00058508 1.222 0.00064127 2.3369 0.0012264 524.78240276234 21.823 0.41776 19.088 18.917 19.335 -2.7348 50 23 3 0 0 0 0.4887 1 11793 11793 1.8442 0 1 3462000 9991 3017 6958 7092 11388 11388 0.02695501146308743 ETLDLKQVP 9 Unmodified _ETLDLKQVP_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.2218017578125 2 521.792589 1041.57063 0.72411 0.00037784 3.4329 0.0017913 4.157 0.0021691 521.7947345336592 43.75 0.34526 38.985 38.843 39.188 -4.7648 33 21 2 0 0 0 0.19613 1 26645 26645 12.532 0 1 9344400 + 9992 20968 6959 7093 11389 11389 0.0515030589485832 ETLISSWNFA 10 Unmodified _ETLISSWNFA_ 0 0 0 REV__nc|ENSG00000197124|O95780-2|ZNF682 REV__nc|ENSG00000197124|O95780-2|ZNF682 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.28857421875 2 584.287671 1166.56079 0.61986 0.00036218 -0.70769 -0.0004135 -0.087834 -5.132E-05 584.2871436824404 67.07 1.8442 60.894 60.096 61.94 -6.1757 394 104 5 0 0 0 0.54684 1 43188 43188 13.906 13.906 1 557220000 + 9993 23897 6960 7094 11390 11390 -0.015828821105287716 ETLKLYFLF 9 Unmodified _ETLKLYFLF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;ENST00000510590.1_1_4:169298892-169300981:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3329467773438 2 587.33135 1172.64815 4.2634 0.002504 -1.4148 -0.00083098 2.8486 0.0016731 587.3305435803944 98.79 0.13828 98.761 98.666 98.804 -0.028282 12 4 3 0 0 0 0.047714 1 54871 54871 58.679 35.53 1 5262300 9994 8967 6961 7095 11391 11391 0.06872943831035627 ETLLASTI 8 Unmodified _ETLLASTI_ 0 0 0 REV__nc|ENSG00000130779|P30622-2|CLIP1 REV__nc|ENSG00000130779|P30622-2|CLIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2432556152344 2 424.242201 846.469849 1.3228 0.00056119 1.521 0.00064527 2.8438 0.0012065 424.2428198932367 42.668 0.39383 37.984 37.832 38.226 -4.6846 45 25 2 0 0 0 0.46494 2 25865 25735;25865 38.151 0 1 34079000 + 9995 19744 6962 7096 11392;11393 11393 0.04047273912010496 ETLLASTI 8 Unmodified _ETLLASTI_ 0 0 0 REV__nc|ENSG00000130779|P30622-2|CLIP1 REV__nc|ENSG00000130779|P30622-2|CLIP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 424.242201 846.469849 0.021195 8.9918E-06 1.6765 0.00071125 1.6977 0.00072025 424.2429516866525 38.048 0.30728 37.777 37.638 37.946 -0.27133 -0.10352 6.4362E-05 NaN 38.151 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4777500 + 9996 19744 6962 7096 0.04047273912010496 ETLLASTI 8 Unmodified _ETLLASTI_ 0 0 0 REV__nc|ENSG00000130779|P30622-2|CLIP1 REV__nc|ENSG00000130779|P30622-2|CLIP1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 424.242201 846.469849 1.3228 0.00056119 1.521 0.00064527 2.8438 0.0012065 424.2428198932367 42.668 0.39383 37.984 37.832 38.226 -4.6846 0.10352 -6.7615E-05 NaN 38.151 45 25 2 NaN NaN NaN NaN 0 NaN NaN 0 34079000 + 9997 19744 6962 7096 0.04047273912010496 ETLTRTYF 8 Unmodified _ETLTRTYF_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7400512695312 2 515.763832 1029.51311 0.27908 0.00014394 1.3398 0.00069104 1.6189 0.00083498 516.2674612554746 63.545 0.17682 63.545 63.482 63.659 0 9 7 2 0 0 0 8.7369 1 35441 35441 14.582 0 1 319220 9998 9905 6963 7097 11394 11394 -0.00046536310719602625 ETLVNVASPH 10 Unmodified _ETLVNVASPH_ 0 0 0 REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF REV__ENST00000483189.1_1_13:111893629-111928079:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.256103515625 2 533.780013 1065.54547 -0.17763 -9.4815E-05 1.7975 0.00095944 1.6198 0.00086463 533.7810576714745 29.119 0.32195 29.119 28.963 29.285 0 29 14 3 0 0 0 0.22489 1 15147 15147 18.146 6.5061 1 1943500 + 9999 18246 6964 7098 11395 11395 0.015322510922715082 ETLYIIDF 8 Unmodified _ETLYIIDF_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2616577148438 2 507.263133 1012.51171 1.2163 0.00061699 0.063778 3.2352E-05 1.2801 0.00064934 507.2637101527781 34.067 0.54089 30.082 29.765 30.306 -3.9853 76 29 3 0 0 0 0.70294 1 19532 19532 16.942 2.104 1 35611000 10000 5680 6965 7099 11396 11396 0.005958296005132979 ETLYIIDF 8 Unmodified _ETLYIIDF_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 507.263133 1012.51171 0.24769 0.00012564 0.27212 0.00013804 0.51981 0.00026368 507.26282218949865 30.404 0.15504 30.324 30.232 30.387 -0.080431 0.12087 0.00014329 NaN 16.942 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 724370 10001 5680 6965 7099 0.005958296005132979 ETMMKQPQRGP 11 Unmodified _ETMMKQPQRGP_ 0 0 0 CON__Q2KJ83 CON__Q2KJ83 CON__Q2KJ83 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8824157714844 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 47.096 1 46.759 46.259 47.259 -0.33664 0 0 0 0.93893 1 25237 25237 1.3296 0 1 + 10002 193 6966 7100 11397 11397 -0.016720166743880327 ETMRKIEQ 8 Unmodified _ETMRKIEQ_ 0 0 0 nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7677001953125 2 517.768591 1033.52263 0.24879 0.00012881 -1.1382 -0.00058933 -0.88942 -0.00046051 517.7684677128602 31.21 0.16426 31.21 31.132 31.296 0 11 7 2 0 0 0 0.66338 1 16257 16257 20.454 1.0146 1 1300600 10003 6182 6967 7101 11398 11398 0.007209087031469608 ETNNEITHDY 10 Unmodified _ETNNEITHDY_ 0 0 0 REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F REV__nc|ENSG00000158786|Q9BZM2|PLA2G2F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5108337402344 3 412.51068 1234.51021 0.13806 5.695E-05 0.34036 0.0001404 0.47842 0.00019735 412.8452646110014 37.083 0.24333 37.083 36.936 37.18 0 23 11 3 0 0 0 0.69064 1 19723 19723 1.9064 0.1641 1 1850000 + 10004 21442 6968 7102 11399 11399 -0.09766456226179798 ETNPGAVLRH 10 Unmodified _ETNPGAVLRH_ 0 0 0 ENST00000376510.7_1_10:23393112-23399193:+|nuORF ENST00000376510.7_1_10:23393112-23399193:+|nuORF ENST00000376510.7_1_10:23393112-23399193:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.1962585449219 3 365.196478 1092.56761 NaN NaN NaN NaN NaN NaN NaN 79.585 1 73.409 72.909 73.909 -6.1757 0 0 0 0.97592 1 52163 52163 1.5923 0.37745 1 10005 12497 6969 7103 11400 11400 0.025024755606864346 ETNRKYNETI 10 Unmodified _ETNRKYNETI_ 0 0 0 REV__ENSG00000139618|ENST00000380152|BRCA2 REV__ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3182373046875 2 634.317491 1266.62043 0.11455 7.2662E-05 0.79889 0.00050675 0.91344 0.00057941 634.3180778087443 31.289 0.18584 31.289 31.174 31.359 0 17 8 3 0 0 0 0.19566 1 16286 16286 47.749 18.667 1 2048300 + 10006 20418 6970 7104 11401 11401 -0.0022161116712595685 ETNRYWRITF 10 Unmodified _ETNRYWRITF_ 0 0 0 REV__ENSG00000177103|ENST00000651296|DSCAML1 REV__ENSG00000177103|ENST00000651296|DSCAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.3517456054688 2 693.351668 1384.68878 0.21831 0.00015137 -1.1316 -0.00078459 -0.91328 -0.00063323 693.3512508684205 61.792 0.16471 61.305 61.222 61.387 -0.48764 11 7 2 0 0 0 0.6966 1 33673 33673 3.2813 0.28607 1 860500 + 10007 22964 6971 7105 11402 11402 0.011826782033494965 ETPEGEEHHP 10 Unmodified _ETPEGEEHHP_ 0 0 0 ENST00000510079.2_1_4:79102321-79102666:-|nuORF;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;MAST2-SERBP1|1|fusion;MAST2-SERBP1|2|fusion;MAST2-SERBP1|3|fusion;MAST2-SERBP1|4|fusion ENST00000510079.2_1_4:79102321-79102666:-|nuORF ENST00000510079.2_1_4:79102321-79102666:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.83056640625 3 387.831753 1160.47343 0.73629 0.00028555 -1.0607 -0.00041137 -0.3244 -0.00012581 387.8313199841298 42.695 0.54591 42.695 42.382 42.928 0 62 27 4 0 0 0 0.7191 1 23197 23197 0.77653 0.77653 1 3435200 10008 5449 6972 7106 11403 11403 -0.1003870805209317 ETPLTREDRPA 11 Unmodified _ETPLTREDRPA_ 0 0 0 ENST00000601134.5_1_19:14805840-14818739:+|nuORF;nc|ENSG00000160961|Q96JL9-2|ZNF333;ENST00000392987.7_1_19:14804303-14817025:+|nuORF;ENST00000597301.5_1_19:14804303-14827921:+|nuORF;nc|ENSG00000160961|Q96JL9-3|ZNF333;ENSG00000160961|ENST00000292530|ZNF333 ENST00000601134.5_1_19:14805840-14818739:+|nuORF ENST00000601134.5_1_19:14805840-14818739:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.8917846679688 3 428.889603 1283.64698 NaN NaN NaN NaN NaN NaN NaN 40.494 1 40.195 39.695 40.695 -0.29953 0 0 0 0.94184 1 21409 21409 0.40827 0 1 10009 6774 6973 7107 11404 11404 0.016500777242072218 ETPPKSKLA 9 Unmodified _ETPPKSKLA_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENST00000487117.1_1_1:21103088-21106933:-|nuORF;nc|ENSG00000127483|Q5SSJ5-5|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7396545410156 2 485.782025 969.549496 0.51621 0.00025077 2.9298 0.0014233 3.446 0.001674 485.7868156748645 53.385 0.56537 53.385 53.099 53.665 0 59 25 4 0 0 0 0.17718 1 29590 29590 20.454 7.9221 1 12786000 10010 4012 6974 7108 11405 11405 0.06350340585993308 ETPSAWSS 8 Unmodified _ETPSAWSS_ 0 0 0 REV__ENSG00000181408|ENST00000313135|UTS2R REV__ENSG00000181408|ENST00000313135|UTS2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.3751220703125 1 864.373389 863.366112 0.3691 0.00031904 0.33426 0.00028893 0.70336 0.00060797 864.3735346522557 53.24 0.28025 53.24 53.099 53.38 0 21 11 3 0 0 0 0.3408 1 29463 29463 50.855 6.448 1 2085500 + 10011 23203 6975 7109 11406 11406 -0.07103633195652037 ETQAAKEACSW 11 Unmodified _ETQAAKEACSW_ 0 0 0 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3171997070312 2 612.271695 1222.52884 -0.3011 -0.00018436 -0.98888 -0.00060546 -1.29 -0.00078982 612.2703163176861 28.956 0.2817 28.956 28.82 29.102 0 39 13 4 0 0 0 0.28456 1 15061 15061 16.149 0 1 3466800 + 10012 23611 6976 7110 11407 11407 -0.07352617855985955 ETQIFVEKL 9 Unmodified _ETQIFVEKL_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-6|RBM26;ENST00000472143.2_1_13:79951480-79979915:-|nuORF nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MSMS AL20221201_MKP_PDAC_01 4 369.5413513183594 3 369.541252 1105.60193 NaN NaN NaN NaN NaN NaN NaN 22.667 1 19.889 19.389 20.389 -2.7784 0 0 0 0.53226 1 12204 12204 10.151 2.6735 1 10013 5187 6977 7111 11408 11408 0.05334878928965736 ETRVPLKKLK 10 Unmodified _ETRVPLKKLK_ 0 0 0 ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B ENSG00000272636|ENST00000613549|DOC2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.397216796875 2 606.395348 1210.77614 NaN NaN NaN NaN NaN NaN NaN 104.31 1 104.27 103.77 104.77 -0.048737 0 0 0 1.0029 1 57916 57916 0.35063 0.043601 1 10014 10890 6978 7112 11409 11409 0.17918504144927283 ETSASALLV 9 Unmodified _ETSASALLV_ 0 0 0 REV__ENSG00000218823|ENST00000404991|PAPOLB REV__ENSG00000218823|ENST00000404991|PAPOLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 890.48388671875 1 890.482939 889.475663 0.048147 4.2874E-05 0.31518 0.00028067 0.36333 0.00032354 890.4836698290599 50.385 0.21314 50.385 50.282 50.495 0 13 9 2 0 0 0 0.14602 1 27772 27772 28.487 1.6032 1 1246500 + 10015 24354 6979 7113 11410 11410 0.02650372423670433 ETSELCGGARI 11 Unmodified _ETSELCGGARI_ 0 0 0 nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L nc|ENSG00000087470|O00429-7|DNM1L nc|ENSG00000087470|O00429-7|DNM1L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.7116088867188 3 379.185251 1134.53392 1.5713 0.00059583 1.9203 0.00072814 3.4916 0.001324 379.1872201413508 35.732 0.34162 31.539 31.367 31.709 -4.1928 41 21 3 0 0 0 0.28226 1 20748 20748 9.7643 0.38113 1 12695000 10016 1471 6980 7114 11411 11411 -0.02796313993349031 ETSIEELYI 9 Unmodified _ETSIEELYI_ 0 0 0 REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7752075195312 2 548.774062 1095.53357 0.44913 0.00024647 0.38347 0.00021044 0.8326 0.00045691 548.7745752872956 57.225 0.27777 56.736 56.558 56.836 -0.48974 24 12 3 0 0 0 0.2001 1 31092 31092 23.148 0 1 5705000 + 10017 26250 6981 7115 11412 11412 -0.010374104415632246 ETSIEELYI 9 Unmodified _ETSIEELYI_ 0 0 0 REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.774062 1095.53357 0.35941 0.00019724 0.31811 0.00017457 0.67752 0.0003718 548.7744120001892 56.761 0.38772 56.761 56.586 56.974 0 0.012838 -1.9196E-05 NaN 23.148 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 18808000 + 10018 26250 6981 7115 -0.010374104415632246 ETSIEELYI 9 Unmodified _ETSIEELYI_ 0 0 0 REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF REV__ENST00000377482.9_1_1:8072006-8072207:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.774062 1095.53357 0.44913 0.00024647 0.38347 0.00021044 0.8326 0.00045691 548.7745752872956 57.225 0.27777 56.736 56.558 56.836 -0.48974 -0.012838 5.2544E-05 NaN 23.148 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5705000 + 10019 26250 6981 7115 -0.010374104415632246 ETSLKSSPV 9 Unmodified _ETSLKSSPV_ 0 0 0 ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L ENSG00000104885|ENST00000398665|DOT1L ENSG00000104885|ENST00000398665|DOT1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.74755859375 2 474.25584 946.497126 0.50123 0.00023771 -3.4415 -0.0016321 -2.9403 -0.0013944 474.2548354331329 53.306 0.17924 53.306 53.221 53.401 0 12 7 2 0 0 0 0.097209 1 29491 29491 30.225 8.4782 1 4180800 10020 2251 6982 7116 11413 11413 0.021737574523854164 ETSRPPRA 8 Unmodified _ETSRPPRA_ 0 0 0 ENST00000466258.1_1_1:231155611-231164468:-|nuORF ENST00000466258.1_1_1:231155611-231164468:-|nuORF ENST00000466258.1_1_1:231155611-231164468:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.2460021972656 2 457.246141 912.477728 NaN NaN NaN NaN NaN NaN NaN 17.18 1 14.593 14.093 15.093 -2.5866 0 0 0 0.95973 1 8960 8960 8.5933 0.98433 1 10021 13751 6983 7117 11414 11414 0.017988459521347977 ETTELLESY 9 Unmodified _ETTELLESY_ 0 0 0 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7560424804688 2 542.755869 1083.49719 NaN NaN NaN NaN NaN NaN NaN 46.872 1 46.872 46.372 47.372 0 0 0 0 0.15618 1 25636 25636 36.044 12.024 1 + 10022 18846 6984 7118 11415 11415 -0.041222873382594116 ETTETQIDPPF 11 Unmodified _ETTETQIDPPF_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2114868164062 3 426.534714 1276.58231 -0.56809 -0.00024231 -1.5198 -0.00064825 -2.0879 -0.00089057 426.53419801999974 18.118 0.079268 18.131 18.083 18.163 0.013865 29 12 3 0 0 0 0.72952 1 9049 9049 0.50596 0.051438 1 1894700 + 10023 17421 6985 7119 11416 11416 -0.04491541872494054 ETTETQIDPPF 11 Unmodified _ETTETQIDPPF_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 426.534714 1276.58231 -0.49347 -0.00021048 -2.6226 -0.0011186 -3.116 -0.0013291 426.533443278171 18.377 0.098007 18.377 18.319 18.417 0 0.12295 -0.0011998 NaN 0.50596 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1077300 + 10024 17421 6985 7119 -0.04491541872494054 ETTKDRSI 8 Unmodified _ETTKDRSI_ 0 0 0 ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.74755859375 2 475.251089 948.487624 0.49593 0.00023569 -2.0732 -0.00098527 -1.5772 -0.00074958 475.2502656294663 53.209 0.20454 53.209 53.099 53.304 0 11 8 2 0 0 0 8.7369 1 29491 29491 26.341 0 1 975350 10025 4620 6986 7120 11417 11417 0.011319891668563287 ETTRRRRK 8 Unmodified _ETTRRRRK_ 0 0 0 ENST00000258169.8_1_16:82197731-82203796:-|nuORF;ENST00000566748.1_1_16:82197734-82203804:-|nuORF ENST00000258169.8_1_16:82197731-82203796:-|nuORF ENST00000258169.8_1_16:82197731-82203796:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2220458984375 3 368.22325 1101.64792 NaN NaN NaN NaN NaN NaN NaN 20.762 1 20.762 20.262 21.262 0 0 0 0 0.97444 1 10463 10463 0.40072 0.1317 1 10026 11199 6987 7121 11418 11418 0.10116381674424701 ETVEILRLD 9 Unmodified _ETVEILRLD_ 0 0 0 REV__ENSG00000137161|ENST00000372836|CNPY3 REV__ENSG00000137161|ENST00000372836|CNPY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2055358886719 3 363.20464 1086.59209 1.6657 0.00060498 0.14837 5.3889E-05 1.814 0.00065887 363.2047054349946 19.435 0.27965 16.779 16.675 16.955 -2.6564 62 27 3 0 0 0 0.52067 1 10263 10263 3.8763 0.55669 1 12185000 + 10027 20218 6988 7122 11419 11419 0.05225690923566617 ETVFYYFH 8 Unmodified _ETVFYYFH_ 0 0 0 REV__ENSG00000120162|ENST00000262244|MOB3B REV__ENSG00000120162|ENST00000262244|MOB3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.171875 3 369.171159 1104.49165 0.63875 0.00023581 2.0286 0.00074889 2.6673 0.0009847 369.17190035862814 29.748 0.34287 29.667 29.525 29.868 -0.080431 27 15 2 0 0 0 0.80975 1 15397 15397 0.45834 0.18932 1 18483000 + 10028 19231 6989 7123 11420 11420 -0.056419213394292456 ETVGEDNDYCI 11 Unmodified _ETVGEDNDYCI_ 0 0 0 ENST00000229854.11_1_6:52129078-52129231:-|nuORF ENST00000229854.11_1_6:52129078-52129231:-|nuORF ENST00000229854.11_1_6:52129078-52129231:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.1715393066406 3 419.836176 1256.4867 -0.46046 -0.00019332 0.87312 0.00036657 0.41266 0.00017325 419.83687091576627 40.857 0.64573 40.857 40.659 41.304 0 380 51 9 0 0 0 0.65846 1 22028 22028 6.6235 3.9922 1 304700000 10029 11067 6990 7124 11421 11421 -0.13128638054990915 ETVKLMDML 9 Unmodified _ETVKLMDML_ 0 0 0 REV__CNNM4|p.E343D|1|0.24|ENSG00000158158|chr2:96762028-96762028|G/T|missense_variant REV__CNNM4|p.E343D|1|0.24|ENSG00000158158|chr2:96762028-96762028|G/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.8142700195312 2 540.277403 1078.54025 0.46027 0.00024867 -2.0003 -0.0010807 -1.54 -0.00083203 540.2767060941379 67.749 0.36879 61.574 61.385 61.754 -6.1757 33 20 2 0 0 0 0.17718 1 44266 44266 20.454 3.5113 1 27738000 + 10030 16823 6991 7125 11422 11422 0.0041248791380894545 ETVRELLEN 9 Unmodified _ETVRELLEN_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8182983398438 2 551.790578 1101.5666 -0.16436 -9.0691E-05 -2.4585 -0.0013566 -2.6228 -0.0014473 551.7894217494318 33.667 0.35228 33.507 33.323 33.675 -0.15918 20 14 2 0 0 0 0.20727 1 17586 17586 7.9102 0 1 1201800 10031 4898 6992 7126 11423 11423 0.01988216401127829 ETVYQDDFEYW 11 Unmodified _ETVYQDDFEYW_ 0 0 0 REV__ENSG00000136878|ENST00000372429|USP20 REV__ENSG00000136878|ENST00000372429|USP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.8745422363281 3 498.873507 1493.59869 0.24726 0.00012335 -0.19644 -9.7998E-05 0.050817 2.5351E-05 498.8733357862828 53.215 0.32998 52.763 52.613 52.943 -0.45173 47 16 4 0 0 0 0.72981 1 28861 28861 1.4551 0.94916 1 8811600 + 10032 20193 6993 7127 11424 11424 -0.12836460706375874 ETWNRRLL 8 Unmodified _ETWNRRLL_ 0 0 0 REV__ENSG00000015413|ENST00000690203|DPEP1 REV__ENSG00000015413|ENST00000690203|DPEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2049865722656 3 363.205085 1086.59343 1.6657 0.00060498 -1.079 -0.00039191 0.58662 0.00021306 363.2047054349946 19.435 0.27965 16.779 16.675 16.955 -2.6564 62 27 3 0 0 0 0.79669 1 10379 10379 6.2058 0 1 12185000 + 10033 17086 6994 7128 11425 11425 0.05359369802999936 ETYEEAKYSHS 11 Unmodified _ETYEEAKYSHS_ 0 0 0 REV__ENSG00000054118|ENST00000354618|THRAP3 REV__ENSG00000054118|ENST00000354618|THRAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.1994934082031 3 448.529851 1342.56773 -0.1564 -7.0148E-05 -3.6167 -0.0016222 -3.7731 -0.0016924 448.5275703589211 25.547 0.43305 25.547 25.346 25.779 0 80 20 6 0 0 0 0.65846 1 13145 13145 4.1166 0 1 11534000 + 10034 17279 6995 7129 11426 11426 -0.08985614020593857 ETYHLCGI 8 Unmodified _ETYHLCGI_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2176513671875 2 468.218203 934.421853 NaN NaN NaN NaN NaN NaN NaN 22.783 1 22.783 22.283 23.283 0 0 0 0 0.97444 1 11595 11595 5.2307 0 1 + 10035 23757 6996 7130 11427 11427 -0.047981232796814766 ETYLIRPLP 9 Unmodified _ETYLIRPLP_ 0 0 0 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5484008789062 3 367.881608 1100.623 NaN NaN NaN NaN NaN NaN NaN 21.118 1 21.129 20.629 21.629 0.010553 0 0 0 0.85525 1 10795 10795 0.86438 0.16671 1 + 10036 18783 6997 7131 11428 11428 0.07670889028463534 ETYSDNRRREG 11 Unmodified _ETYSDNRRREG_ 0 0 0 REV__ENSG00000184708|ENST00000330125|EIF4ENIF1 REV__ENSG00000184708|ENST00000330125|EIF4ENIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.823974609375 2 691.824003 1381.63345 NaN NaN NaN NaN NaN NaN NaN 16.872 1 16.878 16.378 17.378 0.0050564 0 0 0 0.9435 1 8481 8481 0 0 1 + 10037 23438 6998 7132 11429 11429 -0.04209780055089141 EVAACCHACS 10 Unmodified _EVAACCHACS_ 0 0 0 REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A REV__nc|ENSG00000110077|Q9H2W1-3|MS4A6A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7690124511719 2 497.18298 992.351407 0.90369 0.0004493 -2.449 -0.0012176 -1.5453 -0.00076829 497.1814501672565 82.983 0.4211 76.807 76.624 77.045 -6.1757 29 22 2 0 0 0 0.23693 1 54522 54522 3.2813 0 1 6410700 + 10038 29565 6999 7133 11430 11430 -0.14507487931325613 EVAEELDW 8 Unmodified _EVAEELDW_ 0 0 0 REV__ENST00000440326.1_1_2:208104660-208104789:+|nuORF REV__ENST00000440326.1_1_2:208104660-208104789:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.6913146972656 2 495.724372 989.434192 0.58009 0.00028757 -0.15742 -7.8035E-05 0.42267 0.00020953 495.7241939595885 57.312 0.26323 57.312 57.156 57.419 0 15 11 2 0 0 0 8.7369 1 31914 31914 9.3474 0 1 1394100 + 10039 27076 7000 7134 11431 11431 -0.06094808335660673 EVAFDAQEKTQ 11 Unmodified _EVAFDAQEKTQ_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3031616210938 2 633.304049 1264.59355 -0.77753 -0.00049241 0.29554 0.00018716 -0.482 -0.00030525 633.3043051351509 32.958 0.27707 32.958 32.811 33.088 0 43 13 4 0 0 0 0.13384 1 17216 17216 47.594 14.809 1 16426000 + 10040 19898 7001 7135 11432 11432 -0.02816719778343213 EVAGAGAASVM 11 Oxidation (M) _EVAGAGAASVM(Oxidation (M))_ EVAGAGAASVM(1) EVAGAGAASVM(96) 0 0 1 ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7315063476562 2 489.731674 977.448796 0.41329 0.0002024 -0.78736 -0.00038559 -0.37407 -0.00018319 489.73172646433284 27.545 0.24269 24.508 24.416 24.658 -3.0365 13 11 2 0 0 0 4.6554E-06 1 15295 15295 96.111 57.935 1 7774500 10041 8599 7002 7136 11433 11433 1455 -0.040830594591511726 EVAGAGAASVM 11 Unmodified _EVAGAGAASVM_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7349548339844 2 481.734217 961.453881 0.68741 0.00033115 0.70295 0.00033864 1.3904 0.00066979 481.73422049462863 44.347 0.32112 39.495 39.311 39.632 -4.852 34 23 2 0 0 0 0.025642 1 27010 27010 56.177 28.548 1 18130000 10042 8599 7002 7137 11434 11434 -0.028387555965423417 EVAGAGAASVM 11 Unmodified _EVAGAGAASVM_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MSMS AL20221201_MKP_PDAC_01 4 481.7350463867188 2 481.734217 961.453881 NaN NaN NaN NaN NaN NaN NaN 44.47 1 39.618 39.118 40.118 -4.852 0 0 0 1.9697E-07 1 27156 27156 99.799 59.849 1 10043 8599 7002 7137 11435 11435 -0.028387555965423417 EVAHHPAL 8 Unmodified _EVAHHPAL_ 0 0 0 REV__nc|ENSG00000073614|P29375-2|KDM5A REV__nc|ENSG00000073614|P29375-2|KDM5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2332458496094 2 437.232502 872.450451 NaN NaN NaN NaN NaN NaN NaN 47.63 1 47.63 47.13 48.13 0 0 0 0 0.97444 1 26083 26083 2.8892 0 1 + 10044 17538 7003 7138 11436 11436 0.009123624117478357 EVAHQWFWLY 10 Unmodified _EVAHQWFWLY_ 0 0 0 nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000433366.6_1_10:75557251-75561274:+|nuORF nc|ENSG00000214655|A7E2V4-5|ZSWIM8 nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.8272094726562 2 689.83258 1377.65061 -0.67962 -0.00046883 -4.0593 -0.0028002 -4.7389 -0.0032691 689.8282031698712 34.651 0.233 34.651 34.54 34.773 0 29 11 3 0 0 0 0.63399 1 18312 18312 9.3831 0 1 2090600 10045 10501 7004 7139 11437 11437 -0.023112077112728002 EVAIHRIRIT 10 Unmodified _EVAIHRIRIT_ 0 0 0 ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20;ENST00000521289.5_1_8:56986544-56986942:-|nuORF ENSG00000008988|ENST00000009589|RPS20 ENSG00000008988|ENST00000009589|RPS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2469177246094 3 403.247173 1206.71969 1.3755 0.00055467 -0.77439 -0.00031227 0.60112 0.0002424 403.24673133648463 101.11 0.17337 94.931 94.831 95.004 -6.1757 21 9 3 0 0 0 0.71276 1 67754 67754 0.62683 0.063655 1 100360000 10046 400 7005 7140 11438 11438 0.12459876308253115 EVAKMEPLNN 10 Unmodified _EVAKMEPLNN_ 0 0 0 nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF;nc|ENSG00000121940|Q96S66-3|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.75341796875 2 572.786981 1143.55941 0.87093 0.00049886 2.8881 0.0016543 3.759 0.0021531 572.7881502244682 51.404 0.19848 51.404 51.302 51.5 0 13 8 2 0 0 0 0.23325 1 28349 28349 10.074 0 1 1194300 10047 3611 7006 7141 11439 11439 -0.006628394709196073 EVAKVIVSM 9 Oxidation (M) _EVAKVIVSM(Oxidation (M))_ EVAKVIVSM(1) EVAKVIVSM(120) 0 0 1 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF nc|ENSG00000127914|Q99996-5|AKAP9 nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2788391113281 2 496.27826 990.541968 -0.65323 -0.00032418 0.485 0.00024069 -0.16823 -8.349E-05 496.2787375563245 30.317 0.28315 30.317 30.139 30.422 0 41 13 4 0 0 0 0.0047067 1 15704 15704 118.07 72.047 1 9915900 10048 4032 7007 7142 11440 11440 722 0.04631864994087209 EVAKVIVSM 9 Oxidation (M) _EVAKVIVSM(Oxidation (M))_ EVAKVIVSM(1) EVAKVIVSM(58) 0 0 1 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF nc|ENSG00000127914|Q99996-5|AKAP9 nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2796325683594 2 496.27826 990.541968 0.64945 0.00032231 0.83738 0.00041557 1.4868 0.00073788 496.2787613785081 30.347 0.25416 30.266 30.105 30.359 -0.080429 20 9 3 0 0 0 0.025842 1 15742 15742 57.722 30.838 1 2465200 10049 4032 7007 7142 11441 11441 722 0.04631864994087209 EVAKVIVSM 9 Oxidation (M) _EVAKVIVSM(Oxidation (M))_ EVAKVIVSM(1) EVAKVIVSM(80) 0 0 1 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF nc|ENSG00000127914|Q99996-5|AKAP9 nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2784423828125 2 496.27826 990.541968 0.983 0.00048784 -0.52284 -0.00025947 0.46016 0.00022837 496.27794968344085 35.043 0.47461 30.948 30.7 31.174 -4.0951 43 27 2 0 0 0 0.010301 1 20217 20217 79.596 41.622 1 24526000 10050 4032 7007 7142 11442 11442 722 0.04631864994087209 EVAKVIVSM 9 Unmodified _EVAKVIVSM_ 0 0 0 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF nc|ENSG00000127914|Q99996-5|AKAP9 nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.2632141113281 2 488.280803 974.547053 1.2071 0.0005894 1.1161 0.00054495 2.3232 0.0011344 488.2815506808724 53.835 0.716 48.03 47.628 48.344 -5.8042 81 43 3 0 0 0 0.18118 1 34156 34156 19.257 7.6167 1 34922000 10051 4032 7007 7143 11443 11443 0.0587616885669604 EVAPAGASY 9 Unmodified _EVAPAGASY_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000565166.2_1_15:95399162-95399906:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4112548828125 1 864.409774 863.402498 -0.51454 -0.00044478 0.26553 0.00022953 -0.24901 -0.00021525 864.4099870545078 28.766 0.26165 28.766 28.641 28.903 0 30 12 3 0 0 0 0.015445 2 14833 14833;14935 68.081 25.986 1 6044300 10052 2311 7008 7144 11444;11445 11444 -0.03466756298951168 EVAPAGASY 9 Unmodified _EVAPAGASY_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000565166.2_1_15:95399162-95399906:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 864.4111938476562 1 864.409774 863.402498 1.2239 0.0010579 0.7515 0.0006496 1.9754 0.0017075 864.4100726546478 33.908 0.36807 29.923 29.765 30.133 -3.9853 34 19 2 0 0 0 0.00856 2 19566 19443;19566 100.37 45.598 1 10618000 10053 2311 7008 7144 11446;11447 11447 -0.03466756298951168 EVAPAGASY 9 Unmodified _EVAPAGASY_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000565166.2_1_15:95399162-95399906:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7095336914062 2 432.708525 863.402498 1.5113 0.00065396 1.0552 0.00045659 2.5665 0.0011105 432.70855137566105 33.961 0.52361 29.976 29.714 30.238 -3.9853 61 28 3 0 0 0 0.019303 2 19464 19464;19589 64.236 31.931 1 16473000 10054 2311 7008 7144 11448;11449 11448 -0.03466756298951168 EVASVYQSY 9 Unmodified _EVASVYQSY_ 0 0 0 nc|ENSG00000088888|Q7Z434-5|MAVS;nc|ENSG00000088888|Q7Z434-2|MAVS;ENSG00000088888|ENST00000428216|MAVS nc|ENSG00000088888|Q7Z434-5|MAVS nc|ENSG00000088888|Q7Z434-5|MAVS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.244873046875 2 523.245472 1044.47639 NaN NaN NaN NaN NaN NaN NaN 39.618 1 39.618 39.118 40.118 0 0 0 0 0.096036 1 21245 21245 44.407 21.259 1 10055 1502 7009 7145 11450 11450 -0.04406832927270443 EVAVRTDPETY 11 Unmodified _EVAVRTDPETY_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.3124389648438 2 640.311874 1278.6092 -0.63534 -0.00040681 0.83963 0.00053763 0.20429 0.00013081 640.3124450410877 33.85 0.23892 33.85 33.709 33.947 0 19 11 2 0 0 0 0.61059 1 17812 17812 10.8 0 1 2049600 10056 7099 7010 7146 11451 11451 -0.018964332612767976 EVAWETLQEEF 11 Unmodified _EVAWETLQEEF_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8185424804688 2 690.819532 1379.62451 NaN NaN NaN NaN NaN NaN NaN 39.922 1 39.922 39.422 40.422 0 0 0 0 0.93933 1 21425 21425 2.9952 0 1 10057 10167 7011 7147 11452 11452 -0.050115664640770774 EVCAPASQ 8 Unmodified _EVCAPASQ_ 0 0 0 REV__ENST00000461456.5_1_2:162565258-162730321:+|nuORF REV__ENST00000461456.5_1_2:162565258-162730321:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.6822814941406 2 402.681453 803.348354 NaN NaN NaN NaN NaN NaN NaN 87.264 1 81.088 80.588 81.588 -6.1757 0 0 0 0.9489 1 57539 57539 10.824 1.4765 1 + 10058 20699 7012 7148 11453 11453 -0.0611867172217444 EVCSAFHDTL 10 Unmodified _EVCSAFHDTL_ 0 0 0 REV__nc|ENSG00000143322|P42684-10|ABL2 REV__nc|ENSG00000143322|P42684-10|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2509765625 2 561.250231 1120.48591 0.63496 0.00035637 0.71013 0.00039856 1.3451 0.00075494 561.2503462761011 68.476 0.41565 67.995 67.725 68.141 -0.48071 48 18 3 0 0 0 0.52888 1 37382 37382 14.838 0 1 3271100 + 10059 29676 7013 7149 11454 11454 -0.06951387913409235 EVDEYRRHWWR 11 Unmodified _EVDEYRRHWWR_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN;nc|ENSG00000010072|Q9H040-3|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.391845703125 2 816.39493 1630.77531 NaN NaN NaN NaN NaN NaN NaN 50.207 1 50.207 49.707 50.707 0 0 0 0 0.94301 1 27670 27670 0.35063 0.35063 1 10060 412 7014 7150 11455 11455 -0.014849422420638803 EVDHTLLGQYT 11 Unmodified _EVDHTLLGQYT_ 0 0 0 MEP1A|p.C308Y|1|0.19|ENSG00000112818|chr6:46826498-46826498|G/A|missense_variant MEP1A|p.C308Y|1|0.19|ENSG00000112818|chr6:46826498-46826498|G/A|missense_variant MEP1A|p.C308Y|1|0.19|ENSG00000112818|chr6:46826498-46826498|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.3148803710938 2 638.314417 1274.61428 -0.36749 -0.00023458 0.34659 0.00022123 -0.020908 -1.3346E-05 638.3146100866944 23.715 0.65092 23.715 23.448 24.099 0 127 32 5 0 0 0 0.63851 1 12177 12177 9.3831 0 1 43598000 10061 15989 7015 7151 11456 11456 -0.0120412939866128 EVDIDECDPDP 11 Unmodified _EVDIDECDPDP_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1635437011719 3 416.164181 1245.47071 0.00839 3.4916E-06 -1.4282 -0.00059435 -1.4198 -0.00059086 416.1636062477276 63.249 0.39701 63.249 63.008 63.405 0 38 16 3 0 0 0 0.71341 1 35211 35211 1.2148 0 1 3583800 10062 5930 7016 7152 11457 11457 -0.14220344291925358 EVDREFWK 8 Unmodified _EVDREFWK_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS AL20221201_MKP_PDAC_01 4 370.1861267089844 3 370.185579 1107.53491 NaN NaN NaN NaN NaN NaN NaN 17.232 1 14.646 14.146 15.146 -2.5866 0 0 0 0.97444 1 8992 8992 3.5965 0 1 10063 6002 7017 7153 11458 11458 -0.014557315621459566 EVDTSMLHF 9 Unmodified _EVDTSMLHF_ 0 0 0 ENSG00000126010|ENST00000380289|GRPR ENSG00000126010|ENST00000380289|GRPR ENSG00000126010|ENST00000380289|GRPR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.2821044921875 2 539.747324 1077.4801 1.1018 0.00059469 -2.5625 -0.0013831 -1.4607 -0.00078843 540.249351121306 54.032 0.35582 48.166 47.964 48.32 -5.8653 36 20 3 0 0 0 0.18521 1 34293 34293 11.64 0 1 12085000 10064 3921 7018 7154 11459 11459 -0.055544864250805404 EVDVRSAYCAA 11 Unmodified _EVDVRSAYCAA_ 0 0 0 nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB nc|ENSG00000257365|P49356-2|FNTB nc|ENSG00000257365|P49356-2|FNTB MSMS AL20221201_MKP_PDAC_01 4 395.1850280761719 3 395.185251 1182.53392 NaN NaN NaN NaN NaN NaN NaN 25.239 1 22.356 21.856 22.856 -2.8831 0 0 0 0.93613 1 13804 13804 2.4348 0.35082 1 10065 10811 7019 7155 11460 11460 -0.05004313993345022 EVDWLQQY 8 Unmodified _EVDWLQQY_ 0 0 0 ENSG00000135913|ENST00000258399|USP37;nc|ENSG00000135913|Q86T82-2|USP37 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7562255859375 2 540.753464 1079.49238 NaN NaN NaN NaN NaN NaN NaN 62.658 1 62.658 62.158 63.158 0 0 0 0 0.93587 1 34952 34952 13.508 1.8676 1 10066 4755 7020 7156 11461 11461 -0.044191266903681026 EVEAGPPGS 9 Unmodified _EVEAGPPGS_ 0 0 0 REV__ENST00000300087.6_1_16:23652742-23652823:+|nuORF REV__ENST00000300087.6_1_16:23652742-23652823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.39111328125 1 842.389039 841.381762 -0.013802 -1.1627E-05 1.2067 0.0010165 1.1929 0.0010049 842.3898263656924 50.4 0.23614 50.4 50.259 50.495 0 13 10 2 0 0 0 0.07916 1 27785 27785 37.974 1.9298 1 1557700 + 10067 25301 7021 7157 11462 11462 -0.045273466786056815 EVEDEMGP 8 Unmodified _EVEDEMGP_ 0 0 0 nc|ENSG00000292357|P15509-2|CSF2RA nc|ENSG00000292357|P15509-2|CSF2RA nc|ENSG00000292357|P15509-2|CSF2RA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.5076599121094 2 453.181483 904.348413 NaN NaN NaN NaN NaN NaN NaN 33.46 1 33.46 32.96 33.96 0 0 0 0 0.97348 1 17553 17553 5.7604 0 1 10068 16647 7022 7158 11463 11463 -0.1075871651281659 EVEEECDYFKE 11 Unmodified _EVEEECDYFKE_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 355.8964538574219 4 355.645971 1418.55478 -0.45394 -0.00016144 -0.86208 -0.00030659 -1.316 -0.00046804 355.64573066612786 33.469 0.64299 33.469 33.327 33.97 0 112 46 3 0 0 0 0.73115 2 17533 17533;17664 0.45452 0 1 53725000 + 10069 22752 7023 7159 11464;11465 11464 -0.13775813195024966 EVEEECDYFKE 11 Unmodified _EVEEECDYFKE_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.8582458496094 3 473.858869 1418.55478 -0.14502 -6.872E-05 -0.81679 -0.00038704 -0.96181 -0.00045576 473.8587286248691 33.705 0.33041 33.546 33.369 33.7 -0.15918 44 13 6 0 0 0 0.73115 1 17580 17580 0.45452 0 1 5152700 + 10070 22752 7023 7159 11466 11466 -0.13775813195024966 EVEEECDYFKE 11 Unmodified _EVEEECDYFKE_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 710.28369140625 2 710.284665 1418.55478 -0.37057 -0.00026321 -0.50776 -0.00036066 -0.87833 -0.00062387 710.284072067542 33.702 0.21368 33.543 33.436 33.649 -0.15918 15 8 2 0 0 0 0.73115 1 17600 17600 1.3295 0 1 2233400 + 10071 22752 7023 7159 11467 11467 -0.13775813195024966 EVEEECDYFKE 11 Unmodified _EVEEECDYFKE_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.8584289550781 3 473.858869 1418.55478 -0.010017 -4.7465E-06 -1.3759 -0.00065197 -1.3859 -0.00065671 473.85819713346916 33.475 0.28723 33.504 33.338 33.625 0.028934 44 12 5 0 0 0 0.73115 1 17576 17576 0.45452 0 1 13340000 + 10072 22752 7023 7159 11468 11468 -0.13775813195024966 EVEEECDYFKE 11 Unmodified _EVEEECDYFKE_ 0 0 0 REV__ENSG00000173825|ENST00000309880|TIGD3 REV__ENSG00000173825|ENST00000309880|TIGD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 473.858869 1418.55478 -0.010017 -4.7465E-06 -1.3759 -0.00065197 -1.3859 -0.00065671 473.85819713346916 33.475 0.28723 33.504 33.338 33.625 0.028934 -0.021218 -0.00028355 NaN 0.45452 44 12 5 NaN NaN NaN NaN 0 NaN NaN 0 13340000 + 10073 22752 7023 7159 -0.13775813195024966 EVEEFRPI 8 Unmodified _EVEEFRPI_ 0 0 0 REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF REV__ENST00000467329.5_1_1:150300781-150316915:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7635498046875 2 509.763832 1017.51311 0.45796 0.00023345 -0.56571 -0.00028838 -0.10775 -5.4927E-05 509.76335471552665 59.229 0.39684 59.229 59.004 59.4 0 23 16 2 0 0 0 0.23628 1 32999 32999 64.236 9.4628 1 9800000 + 10074 19099 7024 7160 11469 11469 0.0050546368928507945 EVELAAQLY 9 Unmodified _EVELAAQLY_ 0 0 0 REV__ENSG00000275793|ENST00000619918|RIMBP3 REV__ENSG00000275793|ENST00000619918|RIMBP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7752075195312 2 518.27149 1034.52843 0.32202 0.0001669 2.7861 0.001444 3.1081 0.0016109 518.2731447374733 81.301 0.28293 81.301 81.087 81.37 0 20 13 2 0 0 0 0.21473 1 45160 45160 4.3292 0 1 785380 + 10075 23330 7025 7161 11470 11470 0.012543304864948368 EVENLLHF 8 Unmodified _EVENLLHF_ 0 0 0 ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENST00000461680.1_1_3:51673299-51697433:+|nuORF ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080|ENST00000684192|RAD54L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2953491210938 2 500.758549 999.502546 1.0117 0.0005066 1.0767 0.00053917 2.0884 0.0010458 500.75939408375604 54.677 0.26191 54.677 54.528 54.79 0 17 10 2 0 0 0 8.7369 1 30418 30418 23.148 6.2061 1 1746400 10076 7134 7026 7162 11471 11471 0.00277481034856919 EVENPHHCDF 10 Unmodified _EVENPHHCDF_ 0 0 0 ENSG00000180096|ENST00000321367|SEPTIN1 ENSG00000180096|ENST00000321367|SEPTIN1 ENSG00000180096|ENST00000321367|SEPTIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7503051757812 2 613.748387 1225.48222 0.31801 0.00019518 0.6719 0.00041238 0.98991 0.00060756 614.250502469175 66.611 0.25004 66.127 65.984 66.235 -0.48323 19 11 2 0 0 0 0.6606 1 36337 36337 7.2892 0.56607 1 2604000 10077 8881 7027 7163 11472 11472 -0.1215005768726769 EVEPAACLAL 10 Unmodified _EVEPAACLAL_ 0 0 0 nc|ENSG00000188916|Q6ZSG2-2|INSYN2A;ENSG00000188916|ENST00000522781|INSYN2A nc|ENSG00000188916|Q6ZSG2-2|INSYN2A nc|ENSG00000188916|Q6ZSG2-2|INSYN2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7916870117188 2 508.260068 1014.50558 0.83918 0.00042652 -1.4816 -0.00075303 -0.6424 -0.00032651 508.2599694871332 64.889 0.089844 58.713 58.644 58.734 -6.1757 5 4 2 0 0 0 0.21952 1 42039 42039 21.747 0 1 2766700 10078 9708 7028 7164 11473 11473 -0.001090119026684988 EVEPPPKD 8 Unmodified _EVEPPPKD_ 0 0 0 ENST00000483596.5_1_10:23220925-23250957:+|nuORF;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3 ENST00000483596.5_1_10:23220925-23250957:+|nuORF ENST00000483596.5_1_10:23220925-23250957:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4512939453125 1 910.451639 909.444362 -0.56881 -0.00051787 2.0139 0.0018335 1.445 0.0013156 910.4539006061186 48.535 0.12901 48.535 48.47 48.6 0 6 5 2 0 0 0 0.54555 1 26646 26646 30.637 5.2372 1 861830 10079 7324 7029 7165 11474 11474 -0.013982006104242828 EVEQLLYY 8 Unmodified _EVEQLLYY_ 0 0 0 ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7645874023438 2 528.76604 1055.51753 0.51697 0.00027336 -0.90118 -0.00047651 -0.38421 -0.00020316 528.7656340459788 76.515 0.63057 70.339 69.951 70.581 -6.1757 47 34 2 0 0 0 0.63229 1 50056 50056 23.148 2.6948 1 17957000 10080 1175 7030 7166 11475 11475 -0.00801071887804028 EVESLLFNL 9 Unmodified _EVESLLFNL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2858276367188 2 532.28714 1062.55973 NaN NaN NaN NaN NaN NaN NaN 91.029 1 90.534 90.034 91.034 -0.49457 0 0 0 0.23581 1 49762 49762 28.487 5.3384 1 + 10081 23718 7031 7167 11476 11476 0.03094903520582193 EVESLRRAL 9 Unmodified _EVESLRRAL_ 0 0 0 nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 nc|ENSG00000214193|A4FU49|SH3D21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2079467773438 3 358.208495 1071.60366 NaN NaN NaN NaN NaN NaN NaN 31.281 1 31.281 30.781 31.781 0 0 0 0 0.67641 1 16288 16288 10.151 0 1 10082 10484 7032 7168 11477 11477 0.07071932737562747 EVETIEMEK 9 Unmodified _EVETIEMEK_ 0 0 0 REV__ENSG00000166164|ENST00000394688|BRD7 REV__ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8471374511719 3 369.846123 1106.51654 1.2133 0.00044874 0.86863 0.00032126 2.0819 0.00077 369.8465183223218 35.456 0.39776 31.263 31.076 31.474 -4.1928 46 24 3 0 0 0 0.30562 1 20545 20545 11.495 2.5185 1 19833000 + 10083 22089 7033 7169 11478 11478 -0.032456543190164666 EVETKEECEKY 11 Unmodified _EVETKEECEKY_ 0 0 0 ENST00000467080.1_1_10:6155999-6157276:+|nuORF;ENST00000465906.5_1_10:6155352-6157276:+|nuORF;ENST00000476706.5_1_10:6154982-6157516:+|nuORF;ENSG00000134453|ENST00000379888|RBM17 ENST00000467080.1_1_10:6155999-6157276:+|nuORF ENST00000467080.1_1_10:6155999-6157276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.87451171875 3 462.87463 1385.60206 0.56623 0.0002621 1.0452 0.00048379 1.6114 0.00074588 462.87516712822173 22.438 0.5119 19.66 19.408 19.92 -2.7784 68 29 4 0 0 0 0.71036 1 12190 12190 1.3296 0.11481 1 9683200 10084 4610 7034 7170 11479 11479 -0.07531533924043288 EVEVAAIYY 9 Unmodified _EVEVAAIYY_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF;REV__CON__ENSEMBL:ENSBTAP00000031900;REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7662353515625 2 528.76604 1055.51753 0.51697 0.00027336 -0.90118 -0.00047651 -0.38421 -0.00020316 528.7656340459788 76.515 0.63057 70.339 69.951 70.581 -6.1757 47 34 2 0 0 0 0.2001 1 50194 50194 23.148 0 1 17957000 + + 10085 17227;27422;16830 7035 7171 11480 11480 -0.008010718878267653 EVEVFYKNLF 10 Unmodified _EVEVFYKNLF_ 0 0 0 REV__ENST00000296220.5_1_3:125248114-125248261:-|nuORF REV__ENST00000296220.5_1_3:125248114-125248261:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3892822265625 2 644.334621 1286.65469 0.6282 0.00040477 0.96413 0.00062122 1.5923 0.001026 644.3348447633635 101.61 0.13165 95.435 95.351 95.483 -6.1757 21 6 4 0 0 0 0.62068 1 68132 68132 10.074 2.1638 1 107110000 + 10086 25268 7036 7172 11481 11481 0.022828369917760938 EVEWDYCPD 9 Unmodified _EVEWDYCPD_ 0 0 0 nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8160400390625 3 385.814823 1154.42264 NaN NaN NaN NaN NaN NaN NaN 67.973 1 67.973 67.473 68.473 0 0 0 0 0.84564 1 37899 37899 1.0715 0.3738 1 10087 1531 7037 7173 11482 11482 -0.1483937342131867 EVFCEYFKE 9 Unmodified _EVFCEYFKE_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2598266601562 2 597.262807 1192.51106 NaN NaN NaN NaN NaN NaN NaN 44.327 1 44.327 43.827 44.827 0 0 0 0 0.41346 1 24116 24116 19.257 4.4187 1 10088 4133 7038 7174 11483 11483 -0.07749333110837142 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.782470703125 2 588.782222 1175.54989 0.19424 0.00011437 0.062274 3.6666E-05 0.25652 0.00015103 588.7825943160313 50.56 0.33434 50.56 50.389 50.724 0 53 15 4 0 0 0 0.009483 2 27939 27830;27939 81.89 34.142 1 35556000 10089 3796 7039 7175 11484;11485 11485 -0.03086284484834323 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7830810546875 2 588.782222 1175.54989 0.033927 1.9976E-05 2.5373 0.0014939 2.5713 0.0015139 588.7837557117813 51.166 0.45029 50.753 50.538 50.988 -0.41351 69 22 4 0 0 0 0.05447 1 27630 27630 43.858 9.4566 1 21743000 10090 3796 7039 7175 11486 11486 -0.03086284484834323 EVFDKTYQF 9 Unmodified _EVFDKTYQF_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7815551757812 2 588.782222 1175.54989 0.88392 0.00052044 0.11197 6.5927E-05 0.99589 0.00058636 588.7820884727162 57.441 0.44296 51.413 51.149 51.592 -6.0275 60 23 3 0 0 0 0.0017364 2 36623 36623;36744 134.3 79.522 1 119840000 10091 3796 7039 7175 11487;11488 11487 -0.03086284484834323 EVFEHTVLY 9 Unmodified _EVFEHTVLY_ 0 0 0 nc|ENSG00000189007|Q7Z6V5-2|ADAT2;ENSG00000189007|ENST00000237283|ADAT2 nc|ENSG00000189007|Q7Z6V5-2|ADAT2 nc|ENSG00000189007|Q7Z6V5-2|ADAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7853393554688 2 568.784764 1135.55498 0.28093 0.00015979 0.19457 0.00011067 0.4755 0.00027046 568.7850749578575 52.527 0.30134 52.527 52.376 52.678 0 23 13 2 0 0 0 0.47846 1 29139 29139 13.508 4.9146 1 2451200 10092 9720 7040 7176 11489 11489 -0.007379806221706531 EVFELVKVFAD 11 Unmodified _EVFELVKVFAD_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;nc|ENSG00000187775|Q9UFH2-4|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20221201_MKP_PDAC_01 4 648.3471069335938 2 648.347729 1294.6809 NaN NaN NaN NaN NaN NaN NaN 90.191 1 84.015 83.515 84.515 -6.1757 0 0 0 0.82644 1 59557 59557 10.8 0.72558 1 10093 9593 7041 7177 11490 11490 0.04535106163234559 EVFHGSQGAF 10 Unmodified _EVFHGSQGAF_ 0 0 0 REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF REV__ENST00000375911.1_1_6:31628311-31628413:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.75244140625 2 539.751256 1077.48796 0.39091 0.000211 1.0384 0.00056049 1.4293 0.00077149 539.7518823290823 68.066 0.45369 68.066 67.896 68.35 0 58 22 3 0 0 0 0.46514 1 38010 38010 18.146 3.3081 1 11319000 + 10094 26217 7042 7178 11491 11491 -0.04768591113270304 EVFKERIGY 9 Unmodified _EVFKERIGY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8062744140625 2 570.806031 1139.59751 -0.0041118 -2.347E-06 0.22975 0.00013114 0.22564 0.0001288 570.8063663996303 35.419 0.18999 35.419 35.326 35.515 0 19 9 3 0 0 0 0.10247 1 18761 18761 32.786 17.947 1 7341800 10095 6755;5608 7043 7179 11492 11492 0.0332941450603812 EVFKERIGY 9 Unmodified _EVFKERIGY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8733215332031 3 380.873113 1139.59751 NaN NaN NaN NaN NaN NaN NaN 35.345 1 35.345 34.845 35.845 0 0 0 0 0.20153 1 18684 18684 22.658 11.759 1 10096 6755;5608 7043 7179 11493 11493 0.0332941450603812 EVFKRPTKFYR 11 Unmodified _EVFKRPTKFYR_ 0 0 0 REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1 REV__nc|ENSG00000148337|Q9ULV3-5|CIZ1 MSMS AL20221201_MKP_PDAC_01 4 735.91357421875 2 735.914436 1469.81432 NaN NaN NaN NaN NaN NaN NaN 91.618 1 85.443 84.943 85.943 -6.1757 0 0 0 0.89305 1 60568 60568 7.609 0 1 + 10097 20940 7044 7180 11494 11494 0.09820390059599049 EVFMWFFN 8 Unmodified _EVFMWFFN_ 0 0 0 REV__nc|ENSG00000106113|Q13324-3|CRHR2 REV__nc|ENSG00000106113|Q13324-3|CRHR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2537841796875 2 560.252046 1118.48954 NaN NaN NaN NaN NaN NaN NaN 15.682 1 15.688 15.188 16.188 0.0057774 0 0 0 0.97444 1 7826 7826 0.69038 0 1 + 10098 18491 7045 7181 11495 11495 -0.06496673348874538 EVFNNIIQY 9 Unmodified _EVFNNIIQY_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1;ENST00000578002.1_1_17:72950488-72952031:-|nuORF nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2918090820312 2 570.290214 1138.56587 0.32549 0.00018562 -0.36684 -0.0002092 -0.041346 -2.3579E-05 570.2901882398727 69.703 0.26054 69.703 69.578 69.839 0 19 12 2 0 0 0 0.51218 1 38809 38809 6.7232 1.4263 1 748470 10099 7676 7046 7182 11496 11496 0.002134217521188475 EVFPLAMNY 9 Oxidation (M) _EVFPLAM(Oxidation (M))NY_ EVFPLAM(1)NY EVFPLAM(93)NY 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2600708007812 2 550.260068 1098.50558 0.52687 0.00028991 -0.54798 -0.00030153 -0.021113 -1.1617E-05 550.2598812849753 67.824 0.62385 67.824 67.56 68.184 0 131 30 5 0 0 0 0.0082281 3 37817 37716;37817;37918 92.822 39.247 1 63986000 10100 2702;2901 7047 7183 11497;11498;11499 11498 466 -0.0397301190264443 EVFPLAMNY 9 Oxidation (M) _EVFPLAM(Oxidation (M))NY_ EVFPLAM(1)NY EVFPLAM(93)NY 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.260498046875 2 550.260068 1098.50558 0.47237 0.00025992 -0.098069 -5.3964E-05 0.3743 0.00020596 550.2601679726769 68.538 0.62623 68.057 67.66 68.286 -0.48071 117 28 5 0 0 0 0.0082281 3 37392 37296;37392;37489 92.822 48.415 1 76611000 10101 2702;2901 7047 7183 11500;11501;11502 11501 466 -0.0397301190264443 EVFPLAMNY 9 Oxidation (M) _EVFPLAM(Oxidation (M))NY_ EVFPLAM(1)NY EVFPLAM(89)NY 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2614135742188 2 550.260068 1098.50558 0.39526 0.0002175 1.3805 0.00075964 1.7758 0.00097714 550.2603679732226 67.997 0.54787 68.022 67.713 68.261 0.025146 56 26 3 0 0 0 0.008678 1 37241 37241 88.904 46.809 1 11751000 10102 2702;2901 7047 7183 11503 11503 466 -0.0397301190264443 EVFPLAMNY 9 Oxidation (M) _EVFPLAM(Oxidation (M))NY_ EVFPLAM(1)NY EVFPLAM(64)NY 0 0 1 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2610473632812 2 550.260068 1098.50558 0.81197 0.0004468 -0.52833 -0.00029072 0.28364 0.00015608 550.2599445508529 75.268 0.87457 69.092 68.624 69.499 -6.1757 184 47 5 0 0 0 0.019303 3 49151 49034;49151;49274 64.236 34.012 1 205920000 10103 2702;2901 7047 7183 11504;11505;11506 11505 466 -0.0397301190264443 EVFPLAMNY 9 Unmodified _EVFPLAMNY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.26220703125 2 542.26261 1082.51067 0.34799 0.0001887 -1.7862 -0.00096859 -1.4382 -0.00077988 542.2617256396045 82.933 0.3537 82.436 82.203 82.557 -0.49751 39 15 3 0 0 0 0.026094 1 45354 45354 57.471 27.247 1 13145000 10104 2702;2901 7047 7184 11507 11507 -0.02728708040035599 EVFPLAMNY 9 Unmodified _EVFPLAMNY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1;ENST00000505672.5_1_6:41904922-42016364:-|nuORF;nc|ENSG00000118971|P30279-2|CCND2;ENSG00000118971|ENST00000261254|CCND2;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1;ENSG00000112576|ENST00000372991|CCND3 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2620849609375 2 542.26261 1082.51067 0.63137 0.00034237 -2.2913 -0.0012425 -1.6599 -0.00090012 542.2613497338673 90.287 0.55116 84.111 83.756 84.307 -6.1757 101 31 4 0 0 0 0.012148 2 59608 59474;59608 74.423 20.847 1 281620000 10105 2702;2901 7047 7184 11508;11509 11509 -0.02728708040035599 EVFRDTVHM 9 Unmodified _EVFRDTVHM_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.51904296875 3 378.518453 1132.53353 1.697 0.00064234 -0.50525 -0.00019125 1.1917 0.00045109 378.5182978888788 40.838 0.38123 36.308 36.13 36.511 -4.5294 40 23 2 0 0 0 0.2143 2 24382 24382;24508 26.268 15.469 1 17310000 10106 4022;16177 7048 7185 11510;11511 11510 -0.027436889225327832 EVFRDTVHM 9 Unmodified _EVFRDTVHM_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20221201_MKP_PDAC_01 4 567.2752685546875 2 567.274041 1132.53353 NaN NaN NaN NaN NaN NaN NaN 40.841 1 36.312 35.812 36.812 -4.5294 0 0 0 0.068038 1 24442 24442 51.63 33.483 1 10107 4022;16177 7048 7185 11512 11512 -0.027436889225327832 EVFRSYVF 8 Unmodified _EVFRSYVF_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.768310546875 2 523.768917 1045.52328 0.22354 0.00011708 -0.8632 -0.00045212 -0.63966 -0.00033504 523.7685600886412 59.589 0.20612 59.099 58.987 59.193 -0.49079 15 9 2 0 0 0 0.52622 1 32407 32407 32.305 13.049 1 1228200 10108 584 7049 7186 11513 11513 0.0023407141452480573 EVFRSYVFY 9 Unmodified _EVFRSYVFY_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3023071289062 2 605.300581 1208.58661 0.44894 0.00027174 0.1175 7.1122E-05 0.56644 0.00034287 605.3002617213572 64.788 0.29968 64.303 64.125 64.424 -0.48512 23 13 3 0 0 0 0.036857 1 35349 35349 51.63 26.23 1 1648200 10109 584 7050 7187 11514 11514 -0.009339878682339986 EVFRSYVFY 9 Unmodified _EVFRSYVFY_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3010864257812 2 605.300581 1208.58661 0.85639 0.00051837 -0.69026 -0.00041781 0.16613 0.00010056 605.3000961609806 64.3 0.29947 64.29 64.097 64.396 -0.010529 27 14 3 0 0 0 0.025842 1 35202 35202 57.722 32.323 1 4433500 10110 584 7050 7187 11515 11515 -0.009339878682339986 EVFTNINKEDS 11 Unmodified _EVFTNINKEDS_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.308349609375 2 648.309332 1294.60411 -1.3416 -0.00086976 -0.1655 -0.0001073 -1.5071 -0.00097705 648.3093527140384 32.531 0.33982 32.531 32.432 32.772 0 62 20 5 0 0 0 0.30985 1 17075 17075 26.268 5.8145 1 36233000 + 10111 20968 7051 7188 11516 11516 -0.031407371238856285 EVGAHPMT 8 Unmodified _EVGAHPMT_ 0 0 0 REV__nc|ENSG00000170153|Q9ULK6-2|RNF150 REV__nc|ENSG00000170153|Q9ULK6-2|RNF150 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.386962890625 1 841.387264 840.379988 -0.18242 -0.00015349 -2.6657 -0.0022429 -2.8482 -0.0023964 841.3846528239188 44.107 0.12012 44.107 44.051 44.171 0 7 5 2 0 0 0 0.50673 1 23996 23996 34.102 1.9855 1 3190700 + 10112 22449 7052 7189 11517 11517 -0.046586789682237395 EVGAIKLEL 9 Unmodified _EVGAIKLEL_ 0 0 0 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.29248046875 2 486.292225 970.569897 0.25239 0.00012274 0.32698 0.00015901 0.57937 0.00028174 486.29241700486386 58.657 0.23733 58.657 58.511 58.748 0 14 9 2 0 0 0 0.36964 1 32666 32666 13.906 0 1 1209600 10113 3505 7053 7190 11518 11518 0.08343511245789159 EVGCEKALVQ 10 Unmodified _EVGCEKALVQ_ 0 0 0 REV__ENSG00000066926|ENST00000262093|FECH REV__ENSG00000066926|ENST00000262093|FECH MSMS AL20221201_MKP_PDAC_01 4 537.794677734375 2 538.276249 1074.53795 NaN NaN NaN NaN NaN NaN NaN 68.796 1 62.62 62.12 63.12 -6.1757 0 0 0 0.57227 1 44916 44916 22.736 0 1 + 10114 17410 7054 7191 11519 11519 0.0036577550035872264 EVGEGVIKII 10 Unmodified _EVGEGVIKII_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|13|2|sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|13|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2473754882812 2 528.818607 1055.62266 0.96807 0.00051194 -1.0868 -0.00057473 -0.11874 -6.2794E-05 528.8182516168706 46.052 0.33445 46.052 45.918 46.252 0 36 15 3 0 0 0 0.22149 1 25207 25207 20.454 4.6064 1 7310300 + 10115 29402 7055 7192 11520 11520 0.09707469308614236 EVGETLLYY 9 Unmodified _EVGETLLYY_ 0 0 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7721557617188 2 543.771322 1085.52809 0.33811 0.00018385 1.3738 0.00074705 1.7119 0.00093091 543.7719072877103 68.544 0.3904 68.544 68.35 68.74 0 55 17 4 0 0 0 0.37804 1 38262 38262 13.508 4.1604 1 4168200 10116 4035 7056 7193 11521 11521 -0.011250892333919182 EVGFDDDEE 9 Unmodified _EVGFDDDEE_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7821655273438 2 527.696009 1053.37746 0.70038 0.00036959 3.2549 0.0017176 3.9553 0.0020872 527.6982582671236 53.558 0.32713 53.558 53.401 53.728 0 33 15 3 0 0 0 0.209 1 29596 29596 7.2892 2.0586 1 4608800 + 10117 17670 7057 7194 11522 11522 -0.1470890068285371 EVGGKVPYI 9 Unmodified _EVGGKVPYI_ 0 0 0 nc|ENSG00000171121|Q9NPA1-4|KCNMB3;ENSG00000171121|ENST00000392685|KCNMB3;nc|ENSG00000171121|Q9NPA1-2|KCNMB3;nc|ENSG00000171121|Q9NPA1|KCNMB3 nc|ENSG00000171121|Q9NPA1-4|KCNMB3 nc|ENSG00000171121|Q9NPA1-4|KCNMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2712097167969 2 481.271293 960.528032 0.030204 1.4536E-05 -0.052075 -2.5062E-05 -0.021871 -1.0526E-05 481.2710901104262 51.616 0.20317 51.182 51.044 51.247 -0.43367 20 10 3 0 0 0 0.15471 1 27827 27827 27.629 1.3607 1 2597200 10118 8064 7058 7195 11523 11523 0.04618955557270965 EVGGQGAGN 9 Unmodified _EVGGQGAGN_ 0 0 0 ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-3|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.6786804199219 2 394.680299 787.346045 NaN NaN NaN NaN NaN NaN NaN 55.335 1 55.335 54.835 55.835 0 0 0 0 0.82739 1 30738 30738 4.3292 1.7518 1 10119 7738 7059 7196 11524 11524 -0.05613384135608612 EVGHRVFIF 9 Unmodified _EVGHRVFIF_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.75341796875 2 552.303458 1102.59236 NaN NaN NaN NaN NaN NaN NaN 71.842 1 71.842 71.342 72.342 0 0 0 0 0.7453 1 40011 40011 7.9102 0 1 + 10120 18939 7060 7197 11525 11525 0.04517155434086817 EVGIGVVAE 9 Unmodified _EVGIGVVAE_ 0 0 0 ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.4722290039062 1 872.472374 871.465098 0.30056 0.00026223 -0.5001 -0.00043632 -0.19955 -0.0001741 872.471722564734 59.364 0.4287 59.364 59.148 59.577 0 48 18 4 0 0 0 0.024882 1 32994 32994 58.679 1.2075 1 30472000 10121 613 7061 7198 11526 11526 0.024223897692309038 EVGPGRCAVL 10 Unmodified _EVGPGRCAVL_ 0 0 0 ENST00000567216.5_1_16:587439-587742:+|nuORF ENST00000567216.5_1_16:587439-587742:+|nuORF ENST00000567216.5_1_16:587439-587742:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7652282714844 2 500.765852 999.51715 0.41899 0.00020982 0.19365 9.6973E-05 0.61264 0.00030679 500.76603644093063 65.661 0.37733 59.485 59.362 59.74 -6.1757 44 22 3 0 0 0 0.52097 1 42656 42656 15.248 0.66679 1 27780000 10122 15432 7062 7199 11527 11527 0.017372299113503686 EVGPPGEQY 9 Unmodified _EVGPPGEQY_ 0 0 0 REV__nc|ENSG00000055955|Q14624-4|ITIH4 REV__nc|ENSG00000055955|Q14624-4|ITIH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2250671386719 2 488.224539 974.434526 0.20632 0.00010073 3.1406 0.0015333 3.3469 0.0016341 488.2259946566475 66.034 0.15236 65.551 65.434 65.586 -0.48323 10 6 2 0 0 0 0.55144 1 36057 36057 4.3292 0.38484 1 1416300 + 10123 17292 7063 7200 11528 11528 -0.053713886158107016 EVGPPGEQY 9 Unmodified _EVGPPGEQY_ 0 0 0 REV__nc|ENSG00000055955|Q14624-4|ITIH4 REV__nc|ENSG00000055955|Q14624-4|ITIH4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.224539 974.434526 0.15556 7.5947E-05 1.9391 0.00094671 2.0946 0.0010227 488.2261474027463 65.502 0.25204 65.502 65.419 65.671 0 -0.02438 -0.0005115 NaN 4.3292 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 532840 + 10124 17292 7063 7200 -0.053713886158107016 EVGPPGEQY 9 Unmodified _EVGPPGEQY_ 0 0 0 REV__nc|ENSG00000055955|Q14624-4|ITIH4 REV__nc|ENSG00000055955|Q14624-4|ITIH4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.224539 974.434526 0.20632 0.00010073 3.1406 0.0015333 3.3469 0.0016341 488.2259946566475 66.034 0.15236 65.551 65.434 65.586 -0.48323 0.02438 0.00066172 NaN 4.3292 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1416300 + 10125 17292 7063 7200 -0.053713886158107016 EVGTSIETM 9 Unmodified _EVGTSIETM_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4435424804688 1 966.444839 965.437562 0.70235 0.00067878 0.18911 0.00018277 0.89146 0.00086155 966.4442678375322 42.963 0.21693 38.279 38.107 38.323 -4.6846 21 13 2 0 0 0 0.026094 1 25945 25945 57.471 15.377 1 5611900 + 10126 22486 7064 7201 11529 11529 -0.04653881553292649 EVGTSIETM 9 Unmodified _EVGTSIETM_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7266845703125 2 483.726058 965.437562 0.9124 0.00044135 0.10869 5.2575E-05 1.0211 0.00049392 483.72607666842254 42.946 0.31308 38.262 38.055 38.369 -4.6846 33 19 2 0 0 0 0.06187 1 25990 25990 42.095 3.9434 1 13139000 + 10127 22486 7064 7201 11530 11530 -0.04653881553292649 EVHAGGSLHF 10 Unmodified _EVHAGGSLHF_ 0 0 0 ENST00000499953.6_1_11:9804607-9812588:+|nuORF ENST00000499953.6_1_11:9804607-9812588:+|nuORF ENST00000499953.6_1_11:9804607-9812588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2604370117188 2 527.259248 1052.50394 0.95023 0.00050102 1.3968 0.00073648 2.347 0.0012375 527.2598859614269 47.693 0.48579 47.693 47.45 47.936 0 43 22 3 0 0 0 0.52888 1 26202 26202 14.838 3.198 1 7933600 10128 14436 7065 7202 11531 11531 -0.020208848764013965 EVHELLSY 8 Unmodified _EVHELLSY_ 0 0 0 REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2518920898438 2 495.250557 988.486562 0.18706 9.2643E-05 0.73046 0.00036176 0.91752 0.0004544 495.25090453065434 89.606 0.36458 89.606 89.42 89.785 0 42 24 2 0 0 0 0.80676 1 49613 49613 2.5775 0 1 828210 + 10129 21446 7066 7203 11532 11532 -0.008142252020320484 EVHHRPKR 8 Unmodified _EVHHRPKR_ 0 0 0 ENSG00000145526|ENST00000382275|CDH18;nc|ENSG00000145526|Q13634-2|CDH18 ENSG00000145526|ENST00000382275|CDH18 ENSG00000145526|ENST00000382275|CDH18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1059.593627929688 1 1058.59662 1057.58934 0.80832 0.00085569 0.3147 0.00033314 1.123 0.0011888 1059.5963476819288 30.4 0.11854 26.903 26.856 26.975 -3.497 6 5 2 0 0 0 0.80676 1 17193 17193 2.5775 0 1 7984400 10130 5703 7067 7204 11533 11533 0.0628532509992965 EVHLVRFCV 9 Unmodified _EVHLVRFCV_ 0 0 0 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 ENSG00000177992|ENST00000325643|SPATA31E1 MSMS AL20221201_MKP_PDAC_01 4 368.2093811035156 3 367.867305 1100.58008 NaN NaN NaN NaN NaN NaN NaN 16.635 1 14.078 13.578 14.578 -2.557 0 0 0 0.81961 1 8632 8632 5.2969 2.3016 1 10131 8719 7068 7205 11534 11534 0.03381795699374379 EVHQFLTLI 9 Unmodified _EVHQFLTLI_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.3112182617188 2 550.310949 1098.60735 0.40248 0.00022149 1.0029 0.00055189 1.4053 0.00077338 550.3115035101442 75.603 0.33119 75.603 75.415 75.746 0 26 13 3 0 0 0 0.047196 1 42022 42022 46.021 6.0636 1 1749000 10132 9585 7069 7206 11535 11535 0.06198602511426543 EVHQFLTLI 9 Unmodified _EVHQFLTLI_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3110961914062 2 550.310949 1098.60735 0.47602 0.00026196 0.29509 0.00016239 0.7711 0.00042435 550.3110145697409 75.905 0.6027 75.428 75.235 75.837 -0.47714 73 25 4 0 0 0 0.015445 1 41604 41604 68.081 8.0068 1 22051000 10133 9585 7069 7206 11536 11536 0.06198602511426543 EVHQFLTLI 9 Unmodified _EVHQFLTLI_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3108520507812 2 550.310949 1098.60735 0.23837 0.00013118 0.85779 0.00047205 1.0962 0.00060323 550.3114006611213 75.325 0.35613 75.371 75.224 75.58 0.045967 27 14 2 0 0 0 0.024882 1 41537 41537 58.679 6.4105 1 2381500 10134 9585 7069 7206 11537 11537 0.06198602511426543 EVHQFLTLI 9 Unmodified _EVHQFLTLI_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3114624023438 2 550.310949 1098.60735 0.09373 5.1581E-05 2.0612 0.0011343 2.1549 0.0011859 550.3118886105337 93.119 0.72865 86.944 86.74 87.469 -6.1757 95 50 2 0 0 0 0.024882 2 61805 61545;61805 58.679 7.0249 1 59202000 10135 9585 7069 7206 11538;11539 11539 0.06198602511426543 EVHQQRFH 8 Unmodified _EVHQQRFH_ 0 0 0 REV__nc|ENSG00000102445|Q9H714-4|RUBCNL REV__nc|ENSG00000102445|Q9H714-4|RUBCNL MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2725830078125 2 540.770314 1079.52608 0.57641 0.0003117 -1.1377 -0.00061525 -0.56133 -0.00030355 540.7714188452281 66.07 1.4615 59.894 59.382 60.843 -6.1757 329 84 5 0 0 0 0.72953 1 43484 43484 14.582 0 1 517890000 + 10136 29541 7070 7207 11540 11540 -0.010506604079637327 EVHSCSRVHLW 11 Unmodified _EVHSCSRVHLW_ 0 0 0 L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|93|2|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|93|2|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|93|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.83056640625 2 676.830046 1351.64554 1.2215 0.00082674 -0.93552 -0.00063319 0.28597 0.00019355 676.8293309644957 100.28 0.14131 94.104 94.03 94.171 -6.1757 19 8 3 0 0 0 0.53952 1 67062 67062 14.405 2.9107 1 60890000 10137 15955 7071 7208 11541 11541 -0.016218348455595333 EVHWDSII 8 Unmodified _EVHWDSII_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MSMS AL20221201_MKP_PDAC_01 4 499.7817077636719 2 499.750724 997.486896 NaN NaN NaN NaN NaN NaN NaN 100.99 1 94.819 94.319 95.319 -6.1757 0 0 0 0.93066 1 67677 67677 14.582 1.0738 1 10138 7776;16369 7072 7209 11542 11542 -0.011948054821914411 EVIASIHYNL 10 Unmodified _EVIASIHYNL_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8763122558594 3 386.876634 1157.60807 0.32503 0.00012575 0.99952 0.00038669 1.3245 0.00051244 386.87683190983245 36.921 0.59274 36.921 36.566 37.159 0 69 28 3 0 0 0 0.65023 1 19525 19525 8.4443 0 1 3369000 + 10139 20613 7073 7210 11543 11543 0.035573971604890176 EVIKEEVYL 9 Unmodified _EVIKEEVYL_ 0 0 0 REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1 REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3089599609375 2 561.308072 1120.60159 1.201 0.00067414 -0.44716 -0.000251 0.75385 0.00042314 561.3078457473274 81.598 1.4446 75.422 74.679 76.124 -6.1757 187 81 3 0 0 0 0.07087 1 53483 53483 39.95 1.9757 1 46098000 + 10140 20487 7074 7211 11544 11544 0.046114592090816586 EVIKNFIQY 9 Unmodified _EVIKNFIQY_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3173828125 2 577.316232 1152.61791 0.038119 2.2007E-05 1.0641 0.00061434 1.1023 0.00063635 577.3168024177123 56.885 0.29747 56.4 56.226 56.523 -0.48554 32 13 3 0 0 0 0.022193 1 30866 30866 61.357 29.052 1 13232000 10141 1759 7075 7212 11545 11545 0.04770585165852026 EVIKNFIQY 9 Unmodified _EVIKNFIQY_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.265625 2 577.316232 1152.61791 0.92976 0.00053676 -0.94407 -0.00054503 -0.014314 -8.2636E-06 577.3154038105856 63.055 0.54207 56.879 56.7 57.242 -6.1757 41 29 2 0 0 0 0.14017 1 40613 40613 36.127 5.4905 1 31840000 10142 1759 7075 7212 11546 11546 0.04770585165852026 EVIKWTKFF 9 Unmodified _EVIKWTKFF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000332359.5_1_X:149282682-149283381:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8720703125 3 399.893737 1196.65938 0.51316 0.00020521 -2.2747 -0.00090963 -1.7615 -0.00070442 399.8927158111108 66.795 0.58418 66.808 66.708 67.292 0.013046 34 28 2 0 0 0 0.21572 1 36715 36715 2.2828 0.3764 1 2213300 10143 4276 7076 7213 11547 11547 0.0689176592518379 EVIPTHTVY 9 Unmodified _EVIPTHTVY_ 0 0 0 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.779296875 2 529.779482 1057.54441 0.38668 0.00020486 0.12565 6.6564E-05 0.51233 0.00027142 529.7793975939376 39.684 0.25732 39.684 39.575 39.832 0 24 12 3 0 0 0 0.0086179 1 21292 21292 89.427 45.02 1 4329800 10144 6181 7077 7214 11548 11548 0.017940367233904908 EVIPTHTVY 9 Unmodified _EVIPTHTVY_ 0 0 0 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 ENSG00000152382|ENST00000367874|TADA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7803955078125 2 529.779482 1057.54441 0.78047 0.00041348 2.4213 0.0012828 3.2018 0.0016962 529.781629147913 45.683 0.32455 40.728 40.598 40.922 -4.9549 28 21 2 0 0 0 0.042911 1 28142 28142 48.346 19.859 1 7734400 10145 6181 7077 7214 11549 11549 0.017940367233904908 EVIRFHIWW 9 Unmodified _EVIRFHIWW_ 0 0 0 REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29 REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.3435668945312 2 643.345658 1284.67676 NaN NaN NaN NaN NaN NaN NaN 77.167 1 76.684 76.184 77.184 -0.4826 0 0 0 0.85737 1 42245 42245 0.6015 0.14316 1 + 10146 22326 7078 7215 11550 11550 0.04581106250839184 EVISPSPHF 9 Unmodified _EVISPSPHF_ 0 0 0 ENST00000523382.5_1_5:179225178-179228384:-|nuORF;ENST00000520822.5_1_5:179226870-179227569:-|nuORF;nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B ENST00000523382.5_1_5:179225178-179228384:-|nuORF;nc|ENSG00000161013|Q9UQ53-3|MGAT4B nc|ENSG00000161013|Q9UQ53-3|MGAT4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7584228515625 2 506.758549 1011.50255 -0.10996 -5.5722E-05 -0.52608 -0.00026659 -0.63603 -0.00032232 506.75823057775114 76.213 0.21961 75.733 75.639 75.858 -0.47945 12 8 2 0 0 0 0.49272 1 41725 41725 7.9102 2.1497 1 582810 10147 14768;16318 7079 7216 11551 11551 -0.002745189651477631 EVKISILQ 8 Unmodified _EVKISILQ_ 0 0 0 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2876281738281 2 465.286943 928.559333 0.6228 0.00028978 0.5183 0.00024116 1.1411 0.00053094 465.287118154826 74.748 0.43467 74.272 74.02 74.454 -0.47588 53 17 4 0 0 0 0.34916 1 40923 40923 49.933 2.1843 1 13982000 10148 8098 7080 7217 11552 11552 0.09219528591370363 EVKSVVIN 8 Unmodified _EVKSVVIN_ 0 0 0 nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2650451660156 2 444.263468 886.512382 1.7115 0.00076037 1.3601 0.00060424 3.0716 0.0013646 444.2640392749942 106.41 0.37157 100.23 99.914 100.29 -6.1757 73 53 2 0 0 0 0.80763 1 71079 71079 2.0598 0 1 3348200 10149 4955 7081 7218 11553 11553 0.06458669040250697 EVLAVVEQC 9 Unmodified _EVLAVVEQC_ 0 0 0 REV__nc|ENSG00000171606|Q96GC6-2|ZNF274 REV__nc|ENSG00000171606|Q96GC6-2|ZNF274 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.253662109375 2 495.252243 988.489932 NaN NaN NaN NaN NaN NaN NaN 66.078 1 66.078 65.578 66.578 0 0 0 0 0.18753 1 36855 36855 32.305 6.9062 1 + 10150 29777 7082 7219 11554 11554 -0.004772984196847574 EVLCGPGVDL 10 Unmodified _EVLCGPGVDL_ 0 0 0 ENST00000564063.1_1_1:108742725-108743325:+|nuORF ENST00000564063.1_1_1:108742725-108743325:+|nuORF ENST00000564063.1_1_1:108742725-108743325:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2554626464844 2 501.252243 1000.48993 NaN NaN NaN NaN NaN NaN NaN 57.424 1 57.424 56.924 57.924 0 0 0 0 0.92825 1 31955 31955 6.7232 0.36906 1 10151 15374 7083 7220 11555 11555 -0.010292984196894395 EVLFKVHKFW 10 Unmodified _EVLFKVHKFW_ 0 0 0 nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2 nc|ENSG00000172554|Q9NY99-2|SNTG2 nc|ENSG00000172554|Q9NY99-2|SNTG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.9207153320312 3 444.920286 1331.73903 1.111 0.00049433 1.1697 0.0005204 2.2807 0.0010147 445.2556483834726 91.071 1.0615 84.895 84.34 85.401 -6.1757 144 61 3 0 0 0 0.60623 1 60283 60283 6.1918 1.4759 1 21916000 10152 8232 7084 7221 11556 11556 0.0864283259916192 EVLGLILRY 9 Unmodified _EVLGLILRY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3302001953125 2 538.329142 1074.64373 0.73963 0.00039817 -0.3625 -0.00019515 0.37713 0.00020302 538.3290828569 80.687 0.32581 80.195 80.031 80.356 -0.49247 44 13 4 0 0 0 0.14594 1 44130 44130 37.974 11.09 1 5554800 10153 10766 7085 7222 11557 11557 0.10939479408125408 EVLGLILRY 9 Unmodified _EVLGLILRY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3291015625 2 538.329142 1074.64373 0.082531 4.4429E-05 -0.21071 -0.00011343 -0.12818 -6.9003E-05 538.3290667864143 80.066 0.44966 80.123 79.879 80.328 0.057587 62 21 5 0 0 0 0.024189 2 44164 44164;44269 74.929 31.071 1 111030000 10154 10766 7085 7222 11558;11559 11558 0.10939479408125408 EVLGLILRY 9 Unmodified _EVLGLILRY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3301391601562 2 538.329142 1074.64373 1.2585 0.00067746 -1.1208 -0.00060334 0.1377 7.4128E-05 538.3288401524342 97.634 0.46976 91.459 91.17 91.64 -6.1757 71 28 3 0 0 0 0.015688 2 64631 64631;64753 85.272 47.298 1 330420000 10155 10766 7085 7222 11560;11561 11560 0.10939479408125408 EVLGLLSAL 9 Unmodified _EVLGLLSAL_ 0 0 0 REV__ENSG00000183134|ENST00000332539|PTGDR2 REV__ENSG00000183134|ENST00000332539|PTGDR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.55810546875 1 914.55571 913.548434 0.5179 0.00047365 1.5627 0.0014292 2.0806 0.0019029 914.5566347528389 83.997 0.36794 77.822 77.645 78.013 -6.1757 25 19 2 0 0 0 0.019303 1 55209 55209 64.236 13.381 1 6223500 + 10156 23324 7086 7223 11562 11562 0.08820126217085544 EVLHPGDV 8 Unmodified _EVLHPGDV_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8848266601562 2 433.224342 864.434132 -0.2542 -0.00011012 -0.33594 -0.00014554 -0.59014 -0.00025566 433.2242564877486 48.347 0.34644 48.347 48.272 48.618 0 24 16 2 0 0 0 8.7369 1 26511 26511 24.674 0 1 1986100 10157 1809 7087 7224 11563 11563 -0.0035076354499778972 EVLHQWHAI 9 Unmodified _EVLHQWHAI_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7991943359375 2 566.79854 1131.58253 1.0074 0.000571 0.22062 0.00012505 1.228 0.00069605 566.7984102967096 70.511 0.36162 70.547 70.358 70.72 0.035515 26 16 2 0 0 0 0.12424 1 38797 38797 30.637 1.555 1 6033000 + 10158 22295 7088 7225 11564 11564 0.02199967428691707 EVLIMSNIVY 10 Unmodified _EVLIMSNIVY_ 0 0 0 REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2145690917969 3 394.214259 1179.62095 NaN NaN NaN NaN NaN NaN NaN 44.617 1 44.617 44.117 45.117 0 0 0 0 0.96627 1 24282 24282 2.086 0 1 + 10159 28917 7089 7226 11565 11565 0.03832092228367401 EVLISSRSFT 10 Unmodified _EVLISSRSFT_ 0 0 0 REV__ENSG00000173258|ENST00000309235|ZNF483 REV__ENSG00000173258|ENST00000309235|ZNF483 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2086486816406 3 380.208273 1137.60299 -0.50543 -0.00019217 0.26622 0.00010122 -0.23921 -9.095E-05 380.20829272063406 25.924 0.22816 25.924 25.819 26.047 0 26 10 3 0 0 0 0.67046 1 13285 13285 6.1918 0.89496 1 4590400 + 10160 22716 7090 7227 11566 11566 0.03969093297860127 EVLISSRSFT 10 Unmodified _EVLISSRSFT_ 0 0 0 REV__ENSG00000173258|ENST00000309235|ZNF483 REV__ENSG00000173258|ENST00000309235|ZNF483 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.208273 1137.60299 -0.50543 -0.00019217 0.26622 0.00010122 -0.23921 -9.095E-05 380.20829272063406 25.924 0.22816 25.924 25.819 26.047 0 0 0 NaN 6.1918 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4590400 + 10161 22716 7090 7227 0.03969093297860127 EVLKTDDLF 9 Unmodified _EVLKTDDLF_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8109741210938 2 540.284597 1078.55464 0.45082 0.00024357 3.9618 0.0021405 4.4126 0.0023841 540.2855382866818 62.095 0.19392 61.607 61.51 61.704 -0.48764 15 8 2 0 0 0 0.19205 1 33771 33771 14.838 1.7958 1 965270 + 10162 18469 7091 7228 11567 11567 0.018505996579506245 EVLLTFKIF 9 Unmodified _EVLLTFKIF_ 0 0 0 nc|ENSG00000173698|Q8IZP9-10|ADGRG2;nc|ENSG00000173698|Q8IZP9-9|ADGRG2;nc|ENSG00000173698|Q8IZP9-8|ADGRG2;nc|ENSG00000173698|Q8IZP9-7|ADGRG2;nc|ENSG00000173698|Q8IZP9-5|ADGRG2;nc|ENSG00000173698|Q8IZP9-6|ADGRG2;nc|ENSG00000173698|Q8IZP9-3|ADGRG2;nc|ENSG00000173698|Q8IZP9-4|ADGRG2;nc|ENSG00000173698|Q8IZP9-2|ADGRG2;ENSG00000173698|ENST00000379869|ADGRG2 nc|ENSG00000173698|Q8IZP9-10|ADGRG2 nc|ENSG00000173698|Q8IZP9-10|ADGRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3344116210938 2 555.333893 1108.65323 0.64152 0.00035626 0.054099 3.0043E-05 0.69562 0.0003863 555.3337668135567 91.475 0.18761 90.98 90.843 91.031 -0.49458 13 8 2 0 0 0 0.5029 1 50024 50024 7.2892 0.56607 1 367110 10163 8356 7092 7229 11568 11568 0.10325247693640449 EVLNMLMMTAV 11 Unmodified _EVLNMLMMTAV_ 0 0 0 nc|ENSG00000106479|O60290-2|ZNF862;ENSG00000106479|ENST00000223210|ZNF862 nc|ENSG00000106479|O60290-2|ZNF862 nc|ENSG00000106479|O60290-2|ZNF862 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5474243164062 3 417.876372 1250.60729 0.49282 0.00020594 -0.15096 -6.3083E-05 0.34186 0.00014286 417.8766158073352 24.733 0.57886 21.85 21.541 22.12 -2.8831 135 34 7 0 0 0 0.68427 1 13467 13467 2.6312 0 1 66831000 10164 2431 7093 7230 11569 11569 -0.007992248667505919 EVLPINTQY 9 Unmodified _EVLPINTQY_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;nc|ENSG00000164209|Q96AG3-2|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.78466796875 2 538.784764 1075.55498 0.24946 0.0001344 -0.21949 -0.00011826 0.029973 1.6149E-05 538.7845904041114 58.796 0.38137 58.796 58.583 58.965 0 28 15 2 0 0 0 0.026094 1 32729 32729 57.471 5.203 1 8472400 10165 7164 7094 7231 11570 11570 0.020220193778186513 EVLQPIGLTY 10 Unmodified _EVLQPIGLTY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3161010742188 2 566.816064 1131.61758 1.0053 0.00056981 1.0671 0.00060484 2.0724 0.0011746 567.3184762416153 50.199 0.26122 49.806 49.65 49.911 -0.3923 25 12 3 0 0 0 0.23325 1 27041 27041 10.074 3.3508 1 1953000 10166 10367 7095 7232 11571 11571 0.057031654459933634 EVLSRSGPEN 10 Unmodified _EVLSRSGPEN_ 0 0 0 ENST00000497058.5_1_1:95699786-95705364:+|nuORF;ENST00000495272.5_1_1:95699786-95705367:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.272216796875 2 544.272552 1086.53055 0.82207 0.00044743 -1.6922 -0.00092102 -0.87014 -0.00047359 544.2717429169816 35.636 0.44309 31.443 31.235 31.678 -4.1928 46 27 2 0 0 0 0.40136 1 20646 20646 21.537 1.0834 1 10340000 10167 14350 7096 7233 11572 11572 -0.009252407757003311 EVLSRSGPEN 10 Unmodified _EVLSRSGPEN_ 0 0 0 ENST00000497058.5_1_1:95699786-95705364:+|nuORF;ENST00000495272.5_1_1:95699786-95705367:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 544.272552 1086.53055 0.25931 0.00014114 -0.99828 -0.00054333 -0.73896 -0.0004022 544.273479140215 31.442 0.32382 31.442 31.276 31.6 0 0.049042 0.00053021 NaN 21.537 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2552900 10168 14350 7096 7233 -0.009252407757003311 EVLSRSGPEN 10 Unmodified _EVLSRSGPEN_ 0 0 0 ENST00000497058.5_1_1:95699786-95705364:+|nuORF;ENST00000495272.5_1_1:95699786-95705367:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF ENST00000497058.5_1_1:95699786-95705364:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.272552 1086.53055 -0.022293 -1.2133E-05 -1.272 -0.00069232 -1.2943 -0.00070445 544.2716699357322 31.396 0.32272 31.293 31.136 31.459 -0.10269 -0.09961 0.00023225 NaN 21.537 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5648500 10169 14350 7096 7233 -0.009252407757003311 EVLWPLPAY 9 Unmodified _EVLWPLPAY_ 0 0 0 ENSG00000179085|ENST00000368400|DPM3;nc|ENSG00000179085|Q9P2X0-2|DPM3 ENSG00000179085|ENST00000368400|DPM3 ENSG00000179085|ENST00000368400|DPM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2952880859375 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 96.817 1 96.513 96.013 97.013 -0.30472 0 0 0 0.57317 1 52871 52871 13.508 8.2772 1 10170 8808 7097 7234 11573 11573 0.03515815108403331 EVLWPLPAY 9 Unmodified _EVLWPLPAY_ 0 0 0 ENSG00000179085|ENST00000368400|DPM3;nc|ENSG00000179085|Q9P2X0-2|DPM3 ENSG00000179085|ENST00000368400|DPM3 ENSG00000179085|ENST00000368400|DPM3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.3416748046875 2 544.294768 1086.57498 1.0273 0.00055914 -1.4608 -0.00079509 -0.43348 -0.00023594 544.2938837667701 100.42 0.15511 94.243 94.157 94.312 -6.1757 15 9 2 0 0 0 0.16229 1 67163 67163 24.674 6.5389 1 66071000 10171 8808 7097 7234 11574 11574 0.03515815108403331 EVLYRLPTF 9 Unmodified _EVLYRLPTF_ 0 0 0 REV__ENSG00000128594|ENST00000249363|LRRC4 REV__ENSG00000128594|ENST00000249363|LRRC4 MSMS AL20221201_MKP_PDAC_01 4 379.8825378417969 3 379.881608 1136.623 NaN NaN NaN NaN NaN NaN NaN 42.997 1 38.313 37.813 38.813 -4.6846 0 0 0 0.78465 1 26051 26051 6.6304 1.2277 1 + 10172 19620 7098 7235 11575 11575 0.06014889028460857 EVMSSLETP 9 Unmodified _EVMSSLETP_ 0 0 0 ENST00000561309.1_1_15:65677198-65678348:-|nuORF ENST00000561309.1_1_15:65677198-65678348:-|nuORF ENST00000561309.1_1_15:65677198-65678348:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.4702758789062 1 992.460489 991.453213 0.040631 4.0325E-05 1.7719 0.0017585 1.8125 0.0017988 992.4610013356081 50.475 0.37374 50.475 50.331 50.704 0 76 17 6 0 0 0 0.30562 1 27922 27922 16.942 0 1 43238000 10173 15320 7099 7236 11576 11576 -0.042855950362422846 EVNAVVLLY 9 Unmodified _EVNAVVLLY_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2925720214844 2 510.292225 1018.5699 0.32159 0.0001641 0.98051 0.00050035 1.3021 0.00066445 510.29271861103695 80.442 0.4241 80.442 80.225 80.649 0 50 19 3 0 0 0 0.019303 2 44609 44609;44705 64.236 20.705 1 3204300 10174 1679 7100 7237 11577;11578 11577 0.06135511245804537 EVNAVVLLY 9 Unmodified _EVNAVVLLY_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2929992675781 2 510.292225 1018.5699 0.60819 0.00031036 -0.33443 -0.00017066 0.27376 0.0001397 510.29218762058736 80.968 0.35509 80.475 80.227 80.582 -0.49247 37 15 3 0 0 0 0.018301 2 44382 44277;44382 65.235 21.4 1 3869900 10175 1679 7100 7237 11579;11580 11580 0.06135511245804537 EVNAVVLLY 9 Unmodified _EVNAVVLLY_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2935485839844 2 510.292225 1018.5699 1.1225 0.00057281 1.6809 0.00085777 2.8034 0.0014306 510.2935277508654 88.116 0.69484 81.941 81.729 82.424 -6.1757 48 38 2 0 0 0 0.009483 1 58107 58107 81.89 29.622 1 15729000 10176 1679 7100 7237 11581 11581 0.06135511245804537 EVNEPIKEAI 10 Unmodified _EVNEPIKEAI_ 0 0 0 REV__ENST00000449419.5_1_10:97635153-97636355:-|nuORF REV__ENST00000449419.5_1_10:97635153-97636355:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5684814453125 3 381.208161 1140.60265 1.5681 0.00059779 2.3722 0.00090431 3.9403 0.0015021 381.20886966867096 19.964 0.23162 17.308 17.189 17.42 -2.6564 17 12 2 0 0 0 0.23895 1 10661 10661 2.086 0 1 1133200 + 10177 27185 7101 7238 11582 11582 0.037976735780148374 EVNEVTQTKTL 11 Unmodified _EVNEVTQTKTL_ 0 0 0 REV__ENST00000487362.1_1_20:36640605-36642218:-|nuORF REV__ENST00000487362.1_1_20:36640605-36642218:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3385620117188 2 631.33535 1260.65615 1.0589 0.00066853 1.0737 0.00067784 2.1326 0.0013464 631.3363982181602 37.331 0.30508 33.048 32.891 33.196 -4.2835 31 17 2 0 0 0 0.66175 1 21975 21975 6.1918 0.40842 1 17362000 + 10178 18169 7102 7239 11583 11583 0.03624426289843541 EVNKFQMAY 9 Oxidation (M) _EVNKFQM(Oxidation (M))AY_ EVNKFQM(1)AY EVNKFQM(55)AY 0 0 1 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.267578125 2 573.268424 1144.5223 -0.22868 -0.00013109 -0.68908 -0.00039503 -0.91776 -0.00052612 573.2679552202494 29.809 0.35824 29.809 29.572 29.931 0 41 21 2 0 0 0 0.031062 2 15447 15347;15447 54.774 37.831 1 42800000 10179 5221 7103 7240 11584;11585 11585 960 -0.04418511016683624 EVNKFQMAY 9 Oxidation (M) _EVNKFQM(Oxidation (M))AY_ EVNKFQM(1)AY EVNKFQM(42)AY 0 0 1 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.26904296875 2 573.268424 1144.5223 NaN NaN NaN NaN NaN NaN NaN 29.852 1 29.772 29.272 30.272 -0.080429 0 0 0 0.10545 1 15474 15474 42.095 19.358 1 10180 5221 7103 7240 11586 11586 960 -0.04418511016683624 EVNKFQMAY 9 Oxidation (M) _EVNKFQM(Oxidation (M))AY_ EVNKFQM(1)AY EVNKFQM(78)AY 0 0 1 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7719116210938 2 573.268424 1144.5223 1.1467 0.00065738 -0.88774 -0.00050892 0.25897 0.00014846 573.26791702708 33.503 0.56159 29.518 29.223 29.785 -3.9853 79 31 4 0 0 0 0.010818 3 19153 19104;19153;19274 78.149 44.292 1 76157000 10181 5221 7103 7240 11587;11588;11589 11588 960 -0.04418511016683624 EVNKFQMAY 9 Unmodified _EVNKFQMAY_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2720947265625 2 565.270967 1128.52738 1.0336 0.00058428 0.21599 0.00012209 1.2496 0.00070637 565.2707995218813 42.63 0.21209 42.63 42.544 42.756 0 22 10 3 0 0 0 0.16226 1 23102 23102 26.884 14.352 1 2958800 10182 5221 7103 7241 11590 11590 -0.03174207154074793 EVNKFQMAY 9 Unmodified _EVNKFQMAY_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.270967 1128.52738 0.31253 0.00017666 0.99289 0.00056125 1.3054 0.00073792 565.2713254422675 42.986 0.17389 42.676 42.546 42.72 -0.31039 0.022759 0.00027691 NaN 26.884 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2645400 10183 5221 7103 7241 -0.03174207154074793 EVNPNTRVM 9 Oxidation (M) _EVNPNTRVM(Oxidation (M))_ EVNPNTRVM(1) EVNPNTRVM(110) 0 0 1 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.263427734375 2 538.263673 1074.51279 -0.36463 -0.00019627 -0.028336 -1.5252E-05 -0.39296 -0.00021152 538.2638181286557 17.888 0.40312 17.888 17.664 18.067 0 181 67 3 0 0 0 0.0071894 1 8848 8848 111.29 43.206 1 3007900 10184 3701;8178;4086 7104 7242 11591 11591 649 -0.021482793022187252 EVNPNTRVM 9 Oxidation (M) _EVNPNTRVM(Oxidation (M))_ EVNPNTRVM(1) EVNPNTRVM(89) 0 0 1 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2646484375 2 538.263673 1074.51279 0.91603 0.00049307 -1.2676 -0.00068233 -0.35162 -0.00018926 538.2631719329183 19.508 0.42074 16.851 16.743 17.163 -2.6564 53 36 2 0 0 0 0.0086722 2 10423 10307;10423 88.954 30.275 1 9286100 10185 3701;8178;4086 7104 7242 11592;11593 11593 649 -0.021482793022187252 EVNPNTRVM 9 Unmodified _EVNPNTRVM_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2666015625 2 530.266216 1058.51788 -0.19763 -0.0001048 0.046405 2.4607E-05 -0.15122 -8.0188E-05 530.2661558314877 26.068 0.17967 26.068 25.965 26.145 0 11 8 2 0 0 0 0.07087 1 13373 13373 39.95 18.413 1 1319700 10186 3701;8178;4086 7104 7243 11594 11594 -0.009039754396098942 EVNPNTRVM 9 Unmodified _EVNPNTRVM_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2;ENSG00000128699|ENST00000392349|ORMDL1;nc|ENSG00000172057|Q8N138-4|ORMDL3 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.26513671875 2 530.266216 1058.51788 0.53145 0.00028181 -0.32675 -0.00017326 0.20471 0.00010855 530.2659885807725 29.895 0.31649 26.594 26.386 26.703 -3.3016 24 15 2 0 0 0 0.00044362 1 16794 16794 145.13 76.025 1 48907000 10187 3701;8178;4086 7104 7243 11595 11595 -0.009039754396098942 EVPAEFLEVC 10 Unmodified _EVPAEFLEVC_ 0 0 0 REV__nc|ENSG00000077238|P24394-3|IL4R REV__nc|ENSG00000077238|P24394-3|IL4R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7281494140625 2 568.270632 1134.52671 0.32721 0.00018594 0.58558 0.00033277 0.91279 0.00051871 568.2713645784845 80.077 0.38437 80.077 79.841 80.225 0 35 20 3 0 0 0 0.22811 1 44509 44509 10.074 0 1 1801800 + 10188 17606 7105 7244 11596 11596 -0.03517046593765372 EVPAYEDIFR 10 Unmodified _EVPAYEDIFR_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8060913085938 2 619.806228 1237.5979 0.4957 0.00030724 -0.075707 -4.6924E-05 0.42 0.00026032 619.8062587703407 74.876 0.48705 74.876 74.672 75.159 0 71 28 4 0 0 0 0.29752 2 41702 41606;41702 27.629 13.226 1 8801900 10189 1628 7106 7245 11597;11598 11598 -0.011392105647928474 EVPDMFIFL 9 Unmodified _EVPDMFIFL_ 0 0 0 REV__nc|ENSG00000203721|A6NCI5|LINC00862 REV__nc|ENSG00000203721|A6NCI5|LINC00862 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7860107421875 2 555.780636 1109.54672 0.99643 0.0005538 -2.5417 -0.0014126 -1.5452 -0.00085882 555.7789181925135 101.38 0.074272 95.209 95.178 95.252 -6.1757 5 3 2 0 0 0 0.30562 1 68006 68006 16.942 2.104 1 8974300 + 10190 29902 7107 7246 11599 11599 -0.003672508631780147 EVPELYHQRK 10 Unmodified _EVPELYHQRK_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.849365234375 2 649.846219 1297.67788 -0.029157 -1.8947E-05 2.5352 0.0016475 2.506 0.0016285 650.3483828714169 85.9 0.18 85.9 85.792 85.972 0 17 7 3 0 0 0 0.6966 1 47576 47576 3.2813 0.28607 1 827340 10191 10211 7108 7247 11600 11600 0.04095275829081402 EVPHNFRF 8 Unmodified _EVPHNFRF_ 0 0 0 REV__ENSG00000118193|ENST00000367350|KIF14 REV__ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.267822265625 2 523.264333 1044.51411 0.5608 0.00029345 1.3428 0.00070263 1.9036 0.00099607 523.2652397447883 56.899 0.65874 56.899 56.518 57.177 0 76 28 4 0 0 0 0.80232 1 31805 31805 5.2307 0.47466 1 29193000 + 10192 19137 7109 7248 11601 11601 -0.0063627715114762395 EVPLHVEEI 9 Unmodified _EVPLHVEEI_ 0 0 0 REV__ENSG00000185238|ENST00000331079|PRMT3 REV__ENSG00000185238|ENST00000331079|PRMT3 MSMS AL20221201_MKP_PDAC_01 4 532.6942138671875 2 532.784764 1063.55498 NaN NaN NaN NaN NaN NaN NaN 76.012 1 69.837 69.337 70.337 -6.1757 0 0 0 0.50124 1 49723 49723 15.847 0.078963 1 + 10193 23485 7110 7249 11602 11602 0.025740193777892273 EVPMHTLQL 9 Unmodified _EVPMHTLQL_ 0 0 0 REV__ENST00000393909.6_1_2:75879380-75881924:+|nuORF REV__ENST00000393909.6_1_2:75879380-75881924:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2813110351562 2 534.281334 1066.54812 0.31853 0.00017018 -0.075975 -4.0592E-05 0.24255 0.00012959 534.2813105936401 65.346 0.4963 59.17 58.917 59.414 -6.1757 70 27 3 0 0 0 0.05447 1 42569 42569 43.858 5.8843 1 189370000 + 10194 26432 7111 7250 11603 11603 0.017503832255897578 EVPPVSILR 9 Unmodified _EVPPVSILR_ 0 0 0 REV__ENST00000575171.1_1_17:729096-882585:-|nuORF REV__ENST00000575171.1_1_17:729096-882585:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.3059387207031 2 505.305667 1008.59678 0.056281 2.8439E-05 0.50618 0.00025578 0.56246 0.00028421 505.30597742672916 87.335 0.47516 86.83 86.585 87.06 -0.50423 56 19 4 0 0 0 0.41742 1 47809 47809 11.64 0 1 4861900 + 10195 29014 7112 7251 11604 11604 0.09282619857003738 EVQGSALML 9 Unmodified _EVQGSALML_ 0 0 0 nc|ENSG00000106123|O15197-3|EPHB6;nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6 nc|ENSG00000106123|O15197-3|EPHB6 nc|ENSG00000106123|O15197-3|EPHB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.24609375 2 474.24696 946.479368 0.20428 9.6881E-05 -1.8997 -0.00090092 -1.6954 -0.00080404 474.2464348723284 35.867 0.1814 35.867 35.776 35.957 0 16 8 3 0 0 0 0.020973 1 18983 18983 62.573 18.166 1 4488500 10196 2402 7113 7252 11605 11605 0.003987189258737089 EVQHKKSEI 9 Unmodified _EVQHKKSEI_ 0 0 0 REV__ENSG00000204610|ENST00000376694|TRIM15 REV__ENSG00000204610|ENST00000376694|TRIM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.301025390625 2 549.301113 1096.58767 -0.41491 -0.00022791 -0.15146 -8.3198E-05 -0.56638 -0.00031111 549.3008940618554 33.098 0.21508 33.098 32.968 33.183 0 19 10 2 0 0 0 0.06294 1 17311 17311 41.84 3.6641 1 3711800 + 10197 24187 7114 7253 11606 11606 0.04324226500671102 EVQHKKSEI 9 Unmodified _EVQHKKSEI_ 0 0 0 REV__ENSG00000204610|ENST00000376694|TRIM15 REV__ENSG00000204610|ENST00000376694|TRIM15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.301113 1096.58767 -0.41491 -0.00022791 -0.15146 -8.3198E-05 -0.56638 -0.00031111 549.3008940618554 33.098 0.21508 33.098 32.968 33.183 0 -0.0014404 -2.6841E-05 NaN 41.84 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3711800 + 10198 24187 7114 7253 0.04324226500671102 EVQMSFCCGC 10 Unmodified _EVQMSFCCGC_ 0 0 0 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.6913452148438 2 553.692323 1105.37009 NaN NaN NaN NaN NaN NaN NaN 8.7228 1 8.6312 8.1312 9.1312 -0.09156 0 0 0 1.0029 1 4273 4273 0.35063 0.35063 1 10199 86 7115 7254 11607 11607 -0.17837694351760547 EVQQHLVHL 9 Unmodified _EVQQHLVHL_ 0 0 0 nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;nc|ENSG00000141519|Q4G0X9-5|CCDC40;nc|ENSG00000141519|Q4G0X9-4|CCDC40 nc|ENSG00000141519|Q4G0X9-3|CCDC40 nc|ENSG00000141519|Q4G0X9-3|CCDC40 MSMS AL20221201_MKP_PDAC_01 4 368.2075500488281 3 368.204974 1101.59309 NaN NaN NaN NaN NaN NaN NaN 24.416 1 21.588 21.088 22.088 -2.8273 0 0 0 0.6306 1 13292 13292 7.609 2.7119 1 10200 5342 7116 7255 11608 11608 0.046359500831158584 EVQRELQP 8 Unmodified _EVQRELQP_ 0 0 0 REV__nc|ENSG00000079805|P50570-3|DNM2;REV__nc|ENSG00000106976|Q05193-5|DNM1 REV__nc|ENSG00000106976|Q05193-5|DNM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7665100097656 2 499.766906 997.519259 -0.36037 -0.0001801 0.14171 7.082E-05 -0.21866 -0.00010928 499.7668829775144 28.618 0.22001 28.618 28.503 28.723 0 28 10 3 0 0 0 0.50673 1 14758 14758 34.102 2.8341 1 11707000 + 10201 18543;17654 7117 7256 11609 11609 0.020399819208023473 EVRAVPAQ 8 Unmodified _EVRAVPAQ_ 0 0 0 ENST00000606645.1_1_1:2477953-2478280:+|nuORF ENST00000606645.1_1_1:2477953-2478280:+|nuORF ENST00000606645.1_1_1:2477953-2478280:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.245361328125 2 435.245609 868.476666 0.16395 7.1358E-05 -0.40438 -0.00017601 -0.24043 -0.00010465 435.2454801464445 37.461 0.27485 37.461 37.35 37.625 0 24 14 2 0 0 0 0.50364 1 19931 19931 34.402 5.3201 1 8454300 10202 15852 7118 7257 11610 11610 0.037166315832337204 EVRCLYRDY 9 Unmodified _EVRCLYRDY_ 0 0 0 REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF REV__ENST00000483804.5_1_1:161179060-161183980:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7907104492188 2 608.792598 1215.57064 NaN NaN NaN NaN NaN NaN NaN 33.492 1 33.492 32.992 33.992 0 0 0 0 0.41346 1 17571 17571 19.257 3.4098 1 + 10203 21448 7119 7258 11611 11611 -0.028520173767901724 EVRLLKYLF 9 Unmodified _EVRLLKYLF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2415466308594 3 394.241137 1179.70158 1.1763 0.00046374 0.037603 1.4825E-05 1.2139 0.00047856 394.2411146704641 74.35 2.2542 68.175 67.326 69.58 -6.1757 343 118 4 0 0 0 0.27545 2 48968 48844;48968 18.373 10.218 1 119030000 10204 2795 7120 7259 11612;11613 11613 0.11891741333556638 EVRNWQDESKY 11 Unmodified _EVRNWQDESKY_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2296142578125 3 485.228395 1452.66336 0.49582 0.00024059 2.57 0.001247 3.0658 0.0014876 485.2296720381854 69.618 0.23087 69.649 69.534 69.765 0.030914 17 11 2 0 0 0 0.71728 1 38302 38302 2.6312 1.1761 1 2504800 + 10205 24353 7121 7260 11614 11614 -0.04486841109724082 EVRNWQDESKY 11 Unmodified _EVRNWQDESKY_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 485.228395 1452.66336 0.49582 0.00024059 2.57 0.001247 3.0658 0.0014876 485.2296720381854 69.618 0.23087 69.649 69.534 69.765 0.030914 -0.025879 -0.0010678 NaN 2.6312 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2504800 + 10206 24353 7121 7260 -0.04486841109724082 EVRPVETM 8 Unmodified _EVRPVETM_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7419738769531 2 480.744585 959.474617 NaN NaN NaN NaN NaN NaN NaN 57.997 1 57.997 57.497 58.497 0 0 0 0 0.85975 1 32285 32285 20.454 3.3407 1 + 10207 18801 7122 7261 11615 11615 -0.00674165216878464 EVSAILWD 8 Unmodified _EVSAILWD_ 0 0 0 REV__nc|ENSG00000125912|Q969V3-2|NCLN REV__nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4739379882812 1 932.472374 931.465098 1.1821 0.0011023 -0.62013 -0.00057825 0.56195 0.000524 932.4721477835977 86.097 0.32774 79.921 79.709 80.037 -6.1757 26 17 2 0 0 0 0.28079 1 56782 56782 57.471 6.6163 1 9037800 + 10208 19529 7123 7262 11616 11616 -0.0033761023075840058 EVSAKHKA 8 Unmodified _EVSAKHKA_ 0 0 0 REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 869.4832153320312 1 869.483942 868.476666 0.10911 9.4866E-05 -0.49052 -0.0004265 -0.38141 -0.00033163 869.4830768852771 37.495 0.25471 37.495 37.35 37.604 0 24 13 2 0 0 0 0.58902 1 19893 19893 26.884 8.7373 1 6146400 + 10209 22849 7124 7263 11617 11617 0.037166315832337204 EVSAKHKA 8 Unmodified _EVSAKHKA_ 0 0 0 REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.4841918945312 1 869.483942 868.476666 0.56821 0.00049405 -0.90316 -0.00078528 -0.33494 -0.00029123 869.4832458444099 43.302 0.38963 38.537 38.304 38.693 -4.7648 45 27 2 0 0 0 0.40602 1 26314 26314 43.858 13.633 1 20109000 + 10210 22849 7124 7263 11618 11618 0.037166315832337204 EVSAKHKA 8 Unmodified _EVSAKHKA_ 0 0 0 REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF REV__ENST00000550988.5_1_12:57926276-57926769:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 869.483942 868.476666 0.10911 9.4866E-05 -0.49052 -0.0004265 -0.38141 -0.00033163 869.4830768852771 37.495 0.25471 37.495 37.35 37.604 0 0 0 NaN 26.884 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 6146400 + 10211 22849 7124 7263 0.037166315832337204 EVSCLKSV 8 Unmodified _EVSCLKSV_ 0 0 0 ENST00000500741.2_1_12:120929839-120933707:-|nuORF ENST00000500741.2_1_12:120929839-120933707:-|nuORF ENST00000500741.2_1_12:120929839-120933707:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 864.44970703125 1 864.44953 863.442254 0.68603 0.00059304 0.73793 0.0006379 1.424 0.0012309 864.4505556284656 91.462 0.41008 85.286 85.042 85.452 -6.1757 37 22 2 0 0 0 0.72664 1 60371 60371 14.838 0 1 8501500 10212 14441 7125 7264 11619 11619 0.005070473801310982 EVSEEDICNI 10 Unmodified _EVSEEDICNI_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7499389648438 2 575.750261 1149.48597 0.46584 0.00026821 -1.4061 -0.00080955 -0.94023 -0.00054134 575.7493748989209 63.291 0.41279 62.804 62.603 63.016 -0.48617 55 18 4 0 0 0 0.62068 1 34567 34567 10.074 3.3508 1 10509000 10213 770 7126 7265 11620 11620 -0.08279432704080136 EVSEKGVPL 9 Unmodified _EVSEKGVPL_ 0 0 0 REV__ENST00000478009.1_1_1:202935608-202936333:-|nuORF REV__ENST00000478009.1_1_1:202935608-202936333:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7668151855469 2 479.266207 956.517862 1.0857 0.00052032 -3.3885 -0.001624 -2.3029 -0.0011037 479.2683887144502 83.394 0.47401 77.218 76.985 77.459 -6.1757 84 24 5 0 0 0 0.16226 1 54724 54724 26.884 3.7352 1 30254000 + 10214 27622 7127 7266 11621 11621 0.03786347832055981 EVSFELLV 8 Unmodified _EVSFELLV_ 0 0 0 nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L nc|ENSG00000087470|O00429-7|DNM1L nc|ENSG00000087470|O00429-7|DNM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 935.507568359375 1 935.508425 934.501149 0.30682 0.00028703 -0.12543 -0.00011734 0.18139 0.0001697 935.5081113014219 96.878 0.34212 96.574 96.414 96.756 -0.30472 50 20 3 0 0 0 0.28922 1 52868 52868 56.541 9.6204 1 2236600 10215 1471 7128 7267 11622 11622 0.03127846946097179 EVSGEDSEEK 10 Unmodified _EVSGEDSEEK_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2635498046875 2 554.735665 1107.45678 -0.052862 -2.9325E-05 -1.4977 -0.0008308 -1.5505 -0.00086013 554.7347654212981 41.498 0.30125 41.498 41.344 41.645 0 39 15 3 0 0 0 0.23862 1 22336 22336 3.9444 0 1 28949000 10216 8107 7129 7268 11623 11623 -0.092652537287222 EVSGSESFMDY 11 Unmodified _EVSGSESFMDY_ 0 0 0 ENSG00000121577|ENST00000493094|POPDC2 ENSG00000121577|ENST00000493094|POPDC2 ENSG00000121577|ENST00000493094|POPDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.7492065429688 2 625.747718 1249.48088 0.29966 0.00018751 3.2665 0.002044 3.5662 0.0022315 625.7483718101133 68.522 0.21724 68.042 67.901 68.118 -0.48071 16 9 2 0 0 0 0.68427 1 37448 37448 5.7319 1.7875 1 1793600 10217 3587 7130 7269 11624 11624 -0.13387736566664898 EVSHHGGA 8 Unmodified _EVSHHGGA_ 0 0 0 ENST00000527711.5_3_6:125475012-125541239:+|nuORF ENST00000527711.5_3_6:125475012-125541239:+|nuORF ENST00000527711.5_3_6:125475012-125541239:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1830444335938 2 397.183009 792.351465 NaN NaN NaN NaN NaN NaN NaN 97.18 1 96.938 96.438 97.438 -0.24277 0 0 0 0.97444 1 53068 53068 0.79363 0 1 10218 14840 7131 7270 11625 11625 -0.0530166055312975 EVSKIVQTY 9 Unmodified _EVSKIVQTY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7930908203125 2 533.792589 1065.57063 -0.23336 -0.00012456 -0.52069 -0.00027794 -0.75405 -0.0004025 533.7921234014852 33.471 0.22308 33.471 33.345 33.569 0 43 22 3 0 0 0 0.010611 1 17523 17523 78.728 42.601 1 110780000 10219 16049 7132 7271 11626 11626 0.040463058948716935 EVSKIVQTY 9 Unmodified _EVSKIVQTY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.793701171875 2 533.792589 1065.57063 -0.30443 -0.0001625 1.0649 0.00056845 0.76049 0.00040595 533.793108272458 33.631 0.25045 33.472 33.345 33.595 -0.15918 19 10 2 0 0 0 0.010611 1 17552 17552 78.728 30.979 1 3242200 10220 16049 7132 7271 11627 11627 0.040463058948716935 EVSKIVQTY 9 Unmodified _EVSKIVQTY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7927856445312 2 533.792589 1065.57063 0.28157 0.0001503 0.7672 0.00040952 1.0488 0.00055982 533.7929947408777 38.6 0.48195 34.231 33.98 34.461 -4.3689 99 30 4 0 0 0 0.010611 2 22811 22686;22811 78.728 40.754 1 236980000 10221 16049 7132 7271 11628;11629 11629 0.040463058948716935 EVSLQDYAF 9 Unmodified _EVSLQDYAF_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.25244140625 2 536.253297 1070.49204 1.0773 0.00057771 -2.5239 -0.0013534 -1.4466 -0.00077573 536.2518848589359 100.34 0.14324 94.163 94.072 94.215 -6.1757 12 8 2 0 0 0 0.2143 1 67091 67091 21.747 4.8044 1 30389000 10222 2496 7133 7272 11630 11630 -0.04038546410265553 EVSPFTEW 8 Unmodified _EVSPFTEW_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.45068359375 1 994.451639 993.444362 0.89849 0.00089351 0.066349 6.5981E-05 0.96484 0.00095949 994.451484365381 83.568 0.39698 77.392 77.17 77.567 -6.1757 32 20 2 0 0 0 0.61462 1 55021 55021 24.674 7.561 1 8458800 + 10223 21287 7134 7273 11631 11631 -0.05262200610422951 EVSPIHCHEHF 11 Unmodified _EVSPIHCHEHF_ 0 0 0 REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.3040771484375 2 667.800954 1333.58736 -0.023084 -1.5415E-05 0.2547 0.00017009 0.23161 0.00015467 667.80084776699 91.03 0.26093 91.03 90.884 91.145 0 31 12 3 0 0 0 0.71036 1 50318 50318 3.2813 0.28607 1 1448600 + 10224 17413 7135 7274 11632 11632 -0.06609516490857459 EVSPIHCHEHF 11 Unmodified _EVSPIHCHEHF_ 0 0 0 REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.8035888671875 2 667.800954 1333.58736 -0.022983 -1.5348E-05 1.3398 0.00089473 1.3168 0.00087938 667.8015252331384 91.625 0.26541 91.625 91.475 91.74 0 53 22 3 0 0 0 0.63851 1 50645 50645 9.3831 4.4861 1 1295800 + 10225 17413 7135 7274 11633 11633 -0.06609516490857459 EVSPIHCHEHF 11 Unmodified _EVSPIHCHEHF_ 0 0 0 REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.8026123046875 2 667.800954 1333.58736 -0.022029 -1.4711E-05 -0.020942 -1.3985E-05 -0.04297 -2.8696E-05 667.8010192429537 96.66 0.32053 96.66 96.489 96.81 0 53 18 4 0 0 0 0.65108 2 53364 53364;53462 8.7454 3.0136 1 3109900 + 10226 17413 7135 7274 11634;11635 11634 -0.06609516490857459 EVSPIHCHEHF 11 Unmodified _EVSPIHCHEHF_ 0 0 0 REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF REV__ENST00000494901.5_1_2:231375770-231407658:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 667.800954 1333.58736 -0.022983 -1.5348E-05 1.3398 0.00089473 1.3168 0.00087938 667.8015252331384 91.625 0.26541 91.625 91.475 91.74 0 0 0 NaN 9.3831 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1295800 + 10227 17413 7135 7274 -0.06609516490857459 EVSQIQTK 8 Unmodified _EVSQIQTK_ 0 0 0 REV__nc|ENSG00000168610|P40763-3|STAT3 REV__nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.517578125 1 932.504737 931.497461 0.79129 0.00073788 -0.005692 -5.3078E-06 0.7856 0.00073257 932.5047013326374 38.758 0.33091 38.758 38.598 38.929 0 43 14 4 0 0 0 0.80722 1 20725 20725 2.3027 0 1 18717000 + 10228 22327 7136 7275 11636 11636 0.02897177172235388 EVSQPWHQGF 10 Unmodified _EVSQPWHQGF_ 0 0 0 ENST00000547802.1_1_12:113860481-113860643:+|nuORF ENST00000547802.1_1_12:113860481-113860643:+|nuORF ENST00000547802.1_1_12:113860481-113860643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.783935546875 2 607.783087 1213.55162 0.74373 0.00045203 1.9112 0.0011616 2.655 0.0016137 607.7840942283268 75.471 0.40973 74.994 74.759 75.169 -0.47713 39 22 2 0 0 0 0.69064 1 41378 41378 3.9444 1.6417 1 2844500 10229 15130 7137 7276 11637 11637 -0.04661230676197192 EVTESDEYEF 10 Unmodified _EVTESDEYEF_ 0 0 0 REV__ENSG00000198746|ENST00000361720|GPATCH3 REV__ENSG00000198746|ENST00000361720|GPATCH3 MSMS AL20221201_MKP_PDAC_01 4 416.5040588378906 3 416.503191 1246.48774 NaN NaN NaN NaN NaN NaN NaN 82.686 1 76.511 76.011 77.011 -6.1757 0 0 0 0.96981 1 54326 54326 1.9064 0.1641 1 + 10230 24051 7138 7277 11638 11638 -0.1256410041446543 EVTFEGHTMWK 11 Unmodified _EVTFEGHTMWK_ 0 0 0 REV__nc|ENSG00000186471|Q86UN6-3|AKAP14 REV__nc|ENSG00000186471|Q86UN6-3|AKAP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 682.819091796875 2 682.818812 1363.62307 NaN NaN NaN NaN NaN NaN NaN 37.481 1 37.481 36.981 37.981 0 0 0 0 0.81193 1 19949 19949 11.495 0 1 + 10231 23575 7139 7278 11639 11639 -0.04419479033867901 EVTHQEQL 8 Unmodified _EVTHQEQL_ 0 0 0 ENST00000436096.2_1_4:159593593-159602751:+|nuORF ENST00000436096.2_1_4:159593593-159602751:+|nuORF ENST00000436096.2_1_4:159593593-159602751:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7718505859375 2 492.243264 982.471974 -0.2199 -0.00010825 2.6184 0.0012889 2.3985 0.0011807 492.24437832439685 71.086 0.26195 71.086 70.975 71.237 0 14 10 2 0 0 0 8.7369 1 39542 39542 12.532 0 1 428560 10232 13328 7140 7279 11640 11640 -0.019962973501833403 EVTIIPDLTP 10 Unmodified _EVTIIPDLTP_ 0 0 0 REV__ENSG00000149474|ENST00000688188|KAT14 REV__ENSG00000149474|ENST00000688188|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3077392578125 2 549.308072 1096.60159 0.39277 0.00021575 -0.8722 -0.00047911 -0.47943 -0.00026336 549.3080817856421 52.74 0.29775 52.288 52.121 52.419 -0.45173 25 14 2 0 0 0 0.52888 1 28478 28478 14.838 0.93222 1 4025300 + 10233 20997 7141 7280 11641 11641 0.05715459209091023 EVTISVFANV 10 Unmodified _EVTISVFANV_ 0 0 0 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5323486328125 3 360.197485 1077.57063 1.3119 0.00047255 2.509 0.00090372 3.8209 0.0013763 360.5313110406493 44.451 0.16108 39.599 39.486 39.648 -4.852 14 10 2 0 0 0 0.33553 1 27125 27125 27.223 3.2027 1 6153000 + 10234 19930 7142 7281 11642 11642 0.03494305894855643 EVTISVFANV 10 Unmodified _EVTISVFANV_ 0 0 0 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.197485 1077.57063 0.070462 2.538E-05 5.3771 0.0019368 5.4476 0.0019622 360.19960486706503 39.771 0.27237 39.771 39.72 39.993 0 0.085821 0.00026911 NaN 27.223 14 13 2 NaN NaN NaN NaN 0 NaN NaN 0 997020 + 10235 19930 7142 7281 0.03494305894855643 EVTISVFANV 10 Unmodified _EVTISVFANV_ 0 0 0 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 360.197485 1077.57063 1.3119 0.00047255 2.509 0.00090372 3.8209 0.0013763 360.5313110406493 44.451 0.16108 39.599 39.486 39.648 -4.852 -0.085821 -0.0028302 NaN 27.223 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 6153000 + 10236 19930 7142 7281 0.03494305894855643 EVTNFRSLLWY 11 Unmodified _EVTNFRSLLWY_ 0 0 0 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.36962890625 2 714.369527 1426.7245 0.43269 0.0003091 0.12202 8.7165E-05 0.55471 0.00039627 714.3695918320752 79.271 0.58743 79.326 79.015 79.602 0.05497 75 22 5 0 0 0 0.47137 1 43813 43813 22.736 6.5872 1 36394000 10237 16534 7143 7282 11643 11643 0.028207156603912154 EVTRCLQV 8 Unmodified _EVTRCLQV_ 0 0 0 REV__nc|ENSG00000108828|Q99536-2|VAT1 REV__nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2521667480469 2 474.252577 946.490601 0.95209 0.00045153 -1.261 -0.00059805 -0.30895 -0.00014652 474.2519576503074 51.153 0.52459 45.504 45.28 45.804 -5.649 62 31 3 0 0 0 0.52622 1 32218 32218 32.305 0 1 66350000 + 10238 18631 7144 7283 11644 11644 0.015215410200084989 EVTTRWLT 8 Unmodified _EVTTRWLT_ 0 0 0 REV__ENSG00000162896|ENST00000356495|PIGR REV__ENSG00000162896|ENST00000356495|PIGR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.8690490722656 2 503.271824 1004.5291 -0.2075 -0.00010443 1.8524 0.00093228 1.6449 0.00082785 503.27332003405934 33.16 0.19621 33.16 33.068 33.264 0 14 9 2 0 0 0 8.7369 1 17356 17356 8.5933 4.264 1 1675300 + 10239 21703 7145 7284 11645 11645 0.027011699261720423 EVTTYYWF 8 Unmodified _EVTTYYWF_ 0 0 0 REV__ENSG00000249222|ENST00000505920|ATP5MGL REV__ENSG00000249222|ENST00000505920|ATP5MGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7529296875 2 554.752933 1107.49131 NaN NaN NaN NaN NaN NaN NaN 92.367 1 92.367 91.867 92.867 0 0 0 0 0.97444 1 51075 51075 0.79363 0 1 + 10240 24493 7146 7285 11646 11646 -0.05813341059297272 EVTWSRGL 8 Unmodified _EVTWSRGL_ 0 0 0 REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF REV__ENST00000585362.6_3_19:1104424-1105401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2516174316406 2 474.250892 946.48723 0.059773 2.8348E-05 1.3842 0.00065647 1.444 0.00068482 474.25076108024143 45.392 0.2389 45.392 45.288 45.527 0 26 13 3 0 0 0 0.36356 1 24715 24715 48.346 2.3249 1 17756000 + 10241 29093 7147 7286 11647 11647 0.011846142376839452 EVVEEAENGRD 11 Unmodified _EVVEEAENGRD_ 0 0 0 ENST00000607242.1_1_13:82264202-82264532:+|nuORF;ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF;ENST00000466801.5_1_2:232571605-232577558:+|nuORF ENST00000607242.1_1_13:82264202-82264532:+|nuORF ENST00000607242.1_1_13:82264202-82264532:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.780517578125 2 623.780938 1245.54732 0.92992 0.00058007 0.84141 0.00052486 1.7713 0.0011049 623.7808765806102 20.451 0.15684 17.758 17.705 17.862 -2.693 12 7 2 0 0 0 0.43683 1 10903 10903 29.437 16.395 1 887240 10242 9557 7148 7287 11648 11648 -0.06562784680431832 EVVETTQVY 9 Unmodified _EVVETTQVY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2669067382812 2 534.266404 1066.51826 0.59547 0.00031814 -1.3149 -0.00070251 -0.71944 -0.00038437 534.266558695743 38.914 0.51565 38.914 38.62 39.135 0 63 23 4 0 0 0 0.016184 1 20796 20796 67.344 31.3 1 18754000 10243 16412 7149 7288 11649 11649 -0.012342772387455625 EVVETTQVY 9 Unmodified _EVVETTQVY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2665405273438 2 534.266404 1066.51826 0.45366 0.00024237 -4.4167 -0.0023597 -3.9631 -0.0021173 534.2655147931706 46.266 0.2032 41.311 41.226 41.429 -4.9549 19 13 2 0 0 0 0.023164 1 28599 28599 60.39 31.903 1 18289000 10244 16412 7149 7288 11650 11650 -0.012342772387455625 EVVFPQCNEL 10 Unmodified _EVVFPQCNEL_ 0 0 0 REV__ENSG00000128059|ENST00000264220|PPAT REV__ENSG00000128059|ENST00000264220|PPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1908874511719 3 393.190113 1176.54851 1.1837 0.00046541 0.44956 0.00017676 1.6332 0.00064217 393.1902428293236 80.304 2.0794 74.129 72.437 74.516 -6.1757 150 121 2 0 0 0 0.67033 1 52800 52800 5.7834 0.48655 1 21484000 + 10245 19599 7150 7289 11651 11651 -0.032702418452117854 EVVGVRASF 9 Unmodified _EVVGVRASF_ 0 0 0 REV__ENST00000589123.5_2_19:3464463-3465009:+|nuORF REV__ENST00000589123.5_2_19:3464463-3465009:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2666931152344 2 482.266542 962.51853 0.23052 0.00011117 -1.4314 -0.0006903 -1.2008 -0.00057913 482.2659371846145 37.354 0.20861 37.354 37.219 37.428 0 17 10 2 0 0 0 0.14 1 19865 19865 29.082 2.8134 1 3245400 + 10246 29135 7151 7290 11652 11652 0.03577187271753246 EVVGVRASF 9 Unmodified _EVVGVRASF_ 0 0 0 REV__ENST00000589123.5_2_19:3464463-3465009:+|nuORF REV__ENST00000589123.5_2_19:3464463-3465009:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 482.266542 962.51853 0.23052 0.00011117 -1.4314 -0.0006903 -1.2008 -0.00057913 482.2659371846145 37.354 0.20861 37.354 37.219 37.428 0 -0.10846 0.00073968 NaN 29.082 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3245400 + 10247 29135 7151 7290 0.03577187271753246 EVVHLILFY 9 Unmodified _EVVHLILFY_ 0 0 0 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-7|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8251342773438 2 566.823692 1131.63283 NaN NaN NaN NaN NaN NaN NaN 89.31 1 89.358 88.858 89.858 0.047852 0 0 0 0.096036 1 49683 49683 44.407 7.9409 1 10248 6374 7152 7291 11653 11653 0.0722807703386934 EVVLPVLANEK 11 Unmodified _EVVLPVLANEK_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.8546752929688 2 605.855721 1209.69689 -0.1373 -8.3182E-05 -1.6241 -0.00098397 -1.7614 -0.0010672 605.8556081346611 77.894 0.27971 77.894 77.75 78.03 0 22 12 2 0 0 0 0.6889 1 43322 43322 5.2969 1.7004 1 650480 10249 358 7153 7292 11654 11654 0.10042812400138246 EVVMCMTML 9 Unmodified _EVVMCMTML_ 0 0 0 ENST00000368655.4_1_1:153777936-153778125:-|nuORF ENST00000368655.4_1_1:153777936-153778125:-|nuORF ENST00000368655.4_1_1:153777936-153778125:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7329711914062 2 528.73346 1055.45237 0.32563 0.00017217 -1.2724 -0.00067275 -0.94676 -0.00050058 528.7327870436193 78.48 0.65417 72.305 72.058 72.712 -6.1757 78 40 2 0 0 0 0.30562 1 51404 51404 16.942 3.8998 1 31049000 10250 12275 7154 7293 11655 11655 -0.07314172272822361 EVVPLMQLF 9 Unmodified _EVVPLMQLF_ 0 0 0 REV__ENSG00000167487|ENST00000300976|KLHL26 REV__ENSG00000167487|ENST00000300976|KLHL26 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.8272094726562 2 538.296453 1074.57835 1.2954 0.00069729 3.2074 0.0017265 4.5027 0.0024238 538.2981648856885 47.797 0.14762 42.563 42.468 42.616 -5.2339 10 8 2 0 0 0 0.19891 1 29642 29642 7.2892 5.2295 1 6955100 + 10251 22212 7155 7294 11656 11656 0.044047418907666724 EVVRWFFLFWF 11 Unmodified _EVVRWFFLFWF_ 0 0 0 ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 788.412109375 2 788.410998 1574.80744 -0.19733 -0.00015558 0.9334 0.00073591 0.73607 0.00058033 788.411954176848 42.923 0.1937 42.612 42.505 42.699 -0.31039 20 8 3 0 0 0 0.71341 1 22828 22828 2.9952 1.8019 1 6119100 10252 13271 7156 7295 11657 11657 0.04303077179019965 EVVRWFFLFWF 11 Unmodified _EVVRWFFLFWF_ 0 0 0 ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 788.4122924804688 2 788.410998 1574.80744 0.61612 0.00048576 0.6604 0.00052067 1.2765 0.0010064 788.411869398904 42.587 0.22102 42.578 42.444 42.665 -0.0088196 22 9 3 0 0 0 0.71341 1 22793 22793 2.9952 2.6446 1 10227000 10253 13271 7156 7295 11658 11658 0.04303077179019965 EVVTESCNLIR 11 Unmodified _EVVTESCNLIR_ 0 0 0 REV__ENSG00000186795|ENST00000334549|KCNK18 REV__ENSG00000186795|ENST00000334549|KCNK18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.5523071289062 3 421.551822 1261.63364 -0.037604 -1.5852E-05 0.29573 0.00012466 0.25812 0.00010881 421.5518573577734 39.429 0.17356 39.132 39.07 39.243 -0.29716 12 7 2 0 0 0 0.58219 1 20806 20806 6.6235 0.84002 1 1861600 + 10254 23596 7157 7296 11659 11659 0.0132850362060708 EVVYPPPV 8 Unmodified _EVVYPPPV_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2455749511719 2 450.247286 898.48002 NaN NaN NaN NaN NaN NaN NaN 86.641 1 86.641 86.141 87.141 0 0 0 0 0.97348 1 47987 47987 5.7604 2.8712 1 10255 9978 7158 7297 11660 11660 0.026718816372408583 EVWYDIQSY 9 Unmodified _EVWYDIQSY_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7733154296875 2 601.771854 1201.52915 -0.28994 -0.00017448 -0.63821 -0.00038406 -0.92815 -0.00055854 601.7713959361569 70.461 0.28132 70.461 70.308 70.589 0 29 11 3 0 0 0 0.39863 1 39228 39228 12.532 3.1484 1 1533600 10256 16072 7159 7298 11661 11661 -0.06354874864473459 EVWYDIQSY 9 Unmodified _EVWYDIQSY_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 601.7980346679688 2 601.771854 1201.52915 -0.057089 -3.4355E-05 -3.5466 -0.0021342 -3.6037 -0.0021686 602.2707822190193 78.847 0.33345 72.671 72.515 72.849 -6.1757 32 18 2 0 0 0 0.069627 1 51694 51694 46.021 25.606 1 14161000 10257 16072 7159 7298 11662 11662 -0.06354874864473459 EVYAGSHQY 9 Unmodified _EVYAGSHQY_ 0 0 0 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2350463867188 2 527.235439 1052.45632 -0.038352 -2.0221E-05 -0.61597 -0.00032476 -0.65433 -0.00034498 527.2350287249988 21.413 0.29852 21.413 21.253 21.551 0 100 38 3 0 0 0 0.013041 2 10875 10769;10875 71.922 71.922 1 5644100 10258 9090 7160 7299 11663;11664 11664 -0.06780583867225687 EVYAGSHQY 9 Unmodified _EVYAGSHQY_ 0 0 0 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 ENSG00000182827|ENST00000366812|ACBD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2351684570312 2 527.235439 1052.45632 0.28018 0.00014772 -0.62506 -0.00032955 -0.34488 -0.00018183 527.2352140545448 24.229 0.34878 21.401 21.213 21.562 -2.8273 28 19 2 0 0 0 0.013041 1 13156 13156 71.922 71.922 1 11499000 10259 9090 7160 7299 11665 11665 -0.06780583867225687 EVYCIDARY 9 Unmodified _EVYCIDARY_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.2606201171875 2 566.260599 1130.50665 NaN NaN NaN NaN NaN NaN NaN 46.464 1 41.384 40.884 41.884 -5.0805 0 0 0 0.39043 1 28704 28704 20.454 4.6064 1 10260 10274 7161 7300 11666 11666 -0.05338797533750039 EVYDEFDATF 10 Unmodified _EVYDEFDATF_ 0 0 0 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.2608642578125 2 618.258776 1234.503 0.38689 0.0002392 3.1908 0.0019727 3.5777 0.0022119 618.2603172703274 72.978 0.22464 73.019 72.921 73.146 0.041725 14 10 2 0 0 0 0.62068 1 40220 40220 10.074 0 1 2391300 + 10261 29705 7162 7301 11667 11667 -0.10487188826618876 EVYDWKLI 8 Unmodified _EVYDWKLI_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.80615234375 2 533.2844 1064.55425 0.75504 0.00040265 -1.4033 -0.00074837 -0.64829 -0.00034572 533.2829389198695 63.102 0.3775 56.927 56.737 57.115 -6.1757 33 19 3 0 0 0 0.42423 2 40728 40728;40745 42.095 4.1206 1 21394000 + 10262 22314 7163 7302 11668;11669 11668 0.024552247287601858 EVYDWKLI 8 Unmodified _EVYDWKLI_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.80615234375 2 533.2844 1064.55425 0.75504 0.00040265 -1.4033 -0.00074837 -0.64829 -0.00034572 533.2829389198695 63.102 0.3775 56.927 56.737 57.115 -6.1757 33 19 3 0 0 0 8.7369 1 40728 40728 42.095 4.1206 1 21394000 + 10263 22314 7163 7302 11670 11670 0.024552247287601858 EVYDWKLI 8 Unmodified _EVYDWKLI_ 0 0 0 REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.2844 1064.55425 0.23002 0.00012267 -2.4736 -0.0013191 -2.2436 -0.0011965 533.2836340016095 56.602 0.40283 56.602 56.361 56.763 0 -0.1622 -0.00058338 NaN 42.095 50 17 4 NaN NaN NaN NaN 0 NaN NaN 0 10530000 + 10264 22314 7163 7302 0.024552247287601858 EVYEEQISF 9 Unmodified _EVYEEQISF_ 0 0 0 nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2636108398438 2 572.263862 1142.51317 0.79313 0.00045388 1.642 0.00093965 2.4351 0.0013935 572.2649878052358 60.304 0.21037 60.304 60.178 60.388 0 13 8 2 0 0 0 0.1773 1 33628 33628 25.399 1.3787 1 1331700 10265 6094;16271 7164 7303 11671 11671 -0.05238581101366435 EVYFCERPGSF 11 Unmodified _EVYFCERPGSF_ 0 0 0 ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.297607421875 2 667.297713 1332.58087 0.69566 0.00046421 -0.25296 -0.0001688 0.4427 0.00029541 667.2974523992937 83.552 0.90878 77.377 76.91 77.818 -6.1757 127 47 3 0 0 0 0.59689 1 55207 55207 11.495 1.4208 1 49303000 10266 8978 7165 7304 11672 11672 -0.0721145444222202 EVYFSPGHF 9 Unmodified _EVYFSPGHF_ 0 0 0 nc|ENSG00000102886|Q7L5L3-1|GDPD3;ENSG00000102886|ENST00000406256|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7481079101562 2 541.750724 1081.4869 NaN NaN NaN NaN NaN NaN NaN 67.775 1 67.775 67.275 68.275 0 0 0 0 0.50124 1 37791 37791 15.847 0 1 10267 2074 7166 7305 11673 11673 -0.050588054821901096 EVYFSPGHF 9 Unmodified _EVYFSPGHF_ 0 0 0 nc|ENSG00000102886|Q7L5L3-1|GDPD3;ENSG00000102886|ENST00000406256|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2561645507812 2 541.750724 1081.4869 0.29747 0.00016115 0.23704 0.00012842 0.53451 0.00028957 541.751353503783 68.37 0.30833 67.889 67.745 68.053 -0.48071 17 13 2 0 0 0 0.16785 1 37371 37371 23.148 1.4018 1 1482100 10268 2074 7166 7305 11674 11674 -0.050588054821901096 EVYLPNDEIWT 11 Unmodified _EVYLPNDEIWT_ 0 0 0 ENSG00000197776|ENST00000359332|KLHDC1;ENST00000555704.5_1_14:50159830-50218487:+|nuORF ENSG00000197776|ENST00000359332|KLHDC1 ENSG00000197776|ENST00000359332|KLHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.8287963867188 2 689.8299 1377.64525 -0.73212 -0.00050503 -0.92504 -0.00063812 -1.6572 -0.0011432 689.8286191552152 34.314 0.24726 34.314 34.175 34.422 0 30 12 3 0 0 0 0.3535 1 18044 18044 29.841 9.426 1 5908100 10269 10003 7167 7306 11675 11675 -0.028469760844245684 EVYSWLDSF 9 Unmodified _EVYSWLDSF_ 0 0 0 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7138671875 2 573.261122 1144.50769 -0.039088 -2.2407E-05 -1.2258 -0.0007027 -1.2649 -0.00072511 573.2605640177742 71.212 0.24606 71.212 71.117 71.363 0 18 12 2 0 0 0 0.21798 1 39682 39682 2.3027 0 1 449980 10270 3151 7168 7307 11676 11676 -0.05878259893188442 EVYYKLLNTLA 11 Unmodified _EVYYKLLNTLA_ 0 0 0 nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-3|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.9149475097656 3 442.914978 1325.7231 0.3236 0.00014333 -0.73258 -0.00032447 -0.40898 -0.00018114 442.9143221016682 63.475 0.22908 63.475 63.338 63.567 0 19 13 2 0 0 0 0.67037 1 35384 35384 7.0371 1.9896 1 2263900 10271 10418 7169 7308 11677 11677 0.07327081571634153 EWAEMLQDYRQ 11 Unmodified _EWAEMLQDYRQ_ 0 0 0 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2;REV__nc|ENSG00000141027|O75376-2|NCOR1 REV__nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 734.8333740234375 2 734.829908 1467.64526 0.16709 0.00012279 3.4965 0.0025693 3.6636 0.0026921 734.8330286652969 57.879 0.18168 57.389 57.331 57.513 -0.48974 14 8 2 0 0 0 0.721 1 31486 31486 2.2828 0.95324 1 1881000 + 10272 20513;23835 7170 7309 11678 11678 -0.0698529935609713 EWARKPLRF 9 Unmodified _EWARKPLRF_ 0 0 0 nc|ENSG00000103152|P29372-5|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG;nc|ENSG00000103152|P29372-2|MPG nc|ENSG00000103152|P29372-5|MPG nc|ENSG00000103152|P29372-5|MPG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5647888183594 3 401.564614 1201.67201 NaN NaN NaN NaN NaN NaN NaN 34.341 1 34.368 33.868 34.868 0.027401 0 0 0 0.63508 1 18102 18102 11.495 8.4995 1 10273 2106 7171 7310 11679 11679 0.07924222108044887 EWASRFWLW 9 Unmodified _EWASRFWLW_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8154296875 2 640.81419 1279.61383 0.51207 0.00032814 0.5573 0.00035713 1.0694 0.00068527 640.8143587448076 100.56 0.13309 94.38 94.312 94.445 -6.1757 25 8 4 0 0 0 0.011739 1 67258 67258 82.529 50.224 1 175590000 10274 4010 7172 7311 11680 11680 -0.01479459537222283 EWDACRRQ 8 Unmodified _EWDACRRQ_ 0 0 0 REV__ENST00000416860.2_2_1:2487365-2487509:-|nuORF REV__ENST00000416860.2_2_1:2487365-2487509:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2384643554688 2 532.240532 1062.46651 NaN NaN NaN NaN NaN NaN NaN 70.363 1 70.363 69.863 70.863 0 0 0 0 0.97444 1 39206 39206 2.3027 0.24298 1 + 10275 26782 7173 7312 11681 11681 -0.06222299413661858 EWDCELEQL 9 Unmodified _EWDCELEQL_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8350830078125 3 388.834106 1163.48049 0.74263 0.00028876 1.1398 0.00044318 1.8824 0.00073194 388.83422740429313 74.962 0.19139 74.485 74.324 74.516 -0.47714 13 7 2 0 0 0 0.59218 1 41039 41039 0.96228 0 1 900260 + 10276 22259 7174 7313 11682 11682 -0.09471111495895457 EWDDDFSPD 9 Unmodified _EWDDDFSPD_ 0 0 0 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2052001953125 2 563.204001 1124.39345 0.67338 0.00037925 0.56516 0.0003183 1.2385 0.00069755 563.2045193104207 60.592 0.42254 60.592 60.388 60.811 0 64 18 5 0 0 0 0.58865 1 33846 33846 2.0598 2.0598 1 16446000 10277 7234 7175 7314 11683 11683 -0.1637719444593131 EWDDLAQLPF 10 Unmodified _EWDDLAQLPF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENSG00000186526|ENST00000612078|CYP4F8;ENSG00000186204|ENST00000550308|CYP4F12;ENST00000518629.7_2_19:15791179-15807110:+|nuORF;ENST00000550627.5_1_19:15793132-15807110:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8638916015625 3 411.864394 1232.57135 -0.3302 -0.000136 -1.8507 -0.00076224 -2.1809 -0.00089823 411.8640135607753 53.982 0.27491 53.915 53.806 54.081 -0.066936 29 13 3 0 0 0 0.67755 1 29300 29300 5.4027 0.5057 1 3789500 10278 8158;16462 7176 7315 11684 11684 -0.035628994561193394 EWDLQFKNYQ 10 Unmodified _EWDLQFKNYQ_ 0 0 0 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2197875976562 3 457.550698 1369.63027 -0.0050072 -2.291E-06 -0.15007 -6.8665E-05 -0.15508 -7.0956E-05 457.5507619263511 20.164 0.37125 20.164 19.998 20.369 0 116 29 5 0 0 0 0.71042 1 10058 10058 1.7423 0.28716 1 15251000 10279 2929 7177 7316 11685 11685 -0.03976423161748244 EWDQVTVYL 9 Unmodified _EWDQVTVYL_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;nc|ENSG00000001497|Q9Y4W2-4|LAS1L nc|ENSG00000001497|Q9Y4W2-3|LAS1L nc|ENSG00000001497|Q9Y4W2-3|LAS1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7809448242188 2 576.782222 1151.54989 1.2588 0.00072605 2.1862 0.001261 3.445 0.001987 576.7831219488531 90.886 0.58799 84.71 84.406 84.994 -6.1757 62 34 2 0 0 0 0.07916 1 59970 59970 37.974 18.717 1 17090000 10280 256 7178 7317 11686 11686 -0.019822844848022214 EWDVLIAHF 9 Unmodified _EWDVLIAHF_ 0 0 0 ENST00000474436.1_1_9:35093318-35095562:-|nuORF;ENST00000465745.6_1_9:35093896-35094022:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO ENST00000474436.1_1_9:35093318-35095562:-|nuORF;nc|ENSG00000165282|Q8TEQ8-2|PIGO nc|ENSG00000165282|Q8TEQ8-2|PIGO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2870483398438 2 565.287474 1128.5604 NaN NaN NaN NaN NaN NaN NaN 87.72 1 87.216 86.716 87.716 -0.50423 0 0 0 0.40995 1 47982 47982 19.439 11.529 1 10281 13938;7319 7179 7318 11687 11687 0.001257429602674165 EWECLDLEQRD 11 Unmodified _EWECLDLEQRD_ 0 0 0 ENSG00000197863|ENST00000356725|ZNF790 ENSG00000197863|ENST00000356725|ZNF790 ENSG00000197863|ENST00000356725|ZNF790 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2103881835938 3 479.210124 1434.60854 0.55868 0.00026772 -0.24907 -0.00011936 0.30961 0.00014837 479.2100305323141 53.65 0.37766 53.65 53.462 53.839 0 62 17 4 0 0 0 0.71728 1 29697 29697 2.6312 0 1 72340000 10282 10013 7180 7319 11688 11688 -0.09137595972629242 EWECLDLEQRD 11 Unmodified _EWECLDLEQRD_ 0 0 0 ENSG00000197863|ENST00000356725|ZNF790 ENSG00000197863|ENST00000356725|ZNF790 ENSG00000197863|ENST00000356725|ZNF790 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 479.210124 1434.60854 0.22472 0.00010769 0.033882 1.6237E-05 0.2586 0.00012393 479.21016811031694 54.366 0.43522 53.899 53.727 54.162 -0.46664 0.1248 0.00016621 NaN 2.6312 74 22 4 NaN NaN NaN NaN 0 NaN NaN 0 101030000 10283 10013 7180 7319 -0.09137595972629242 EWEEETVTN 9 Unmodified _EWEEETVTN_ 0 0 0 nc|ENSG00000134121|O00533|CHL1;ENSG00000134121|ENST00000256509|CHL1 nc|ENSG00000134121|O00533|CHL1 nc|ENSG00000134121|O00533|CHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7415161132812 2 568.740751 1135.46695 0.88046 0.00050075 0.057085 3.2466E-05 0.93755 0.00053322 568.7409670289512 62.335 0.59076 61.847 61.57 62.161 -0.48764 92 27 5 0 0 0 0.5029 1 34010 34010 7.2892 7.2892 1 52619000 10284 4560 7181 7320 11689 11689 -0.09536646003448368 EWEVGFRSIRD 11 Unmodified _EWEVGFRSIRD_ 0 0 0 ENST00000346798.7_1_21:27484329-27484410:-|nuORF ENST00000346798.7_1_21:27484329-27484410:-|nuORF ENST00000346798.7_1_21:27484329-27484410:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2338256835938 3 465.233481 1392.67861 1.1085 0.00051571 -0.088066 -4.0971E-05 1.0204 0.00047473 465.2334903016376 49.83 0.28096 49.782 49.626 49.907 -0.048824 35 13 4 0 0 0 0.58245 1 26915 26915 12.228 8.6405 1 5624100 10285 12033 7182 7321 11690 11690 -0.0020192952188153868 EWFGDDDQN 9 Unmodified _EWFGDDDQN_ 0 0 0 REV__ENSG00000137478|ENST00000409418|FCHSD2 REV__ENSG00000137478|ENST00000409418|FCHSD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7852172851562 2 563.209618 1124.40468 0.87305 0.00049171 2.0912 0.0011778 2.9642 0.0016695 563.2101445830591 62.407 0.25157 61.92 61.768 62.019 -0.48764 26 11 4 0 0 0 0.21185 1 33976 33976 6.2058 2.9245 1 1899300 + 10286 20242 7183 7322 11691 11691 -0.1525437235179652 EWFVDRAYL 9 Unmodified _EWFVDRAYL_ 0 0 0 ENST00000481205.5_1_14:60072082-60072247:-|nuORF ENST00000481205.5_1_14:60072082-60072247:-|nuORF ENST00000481205.5_1_14:60072082-60072247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.797607421875 2 599.798206 1197.58186 0.18088 0.00010849 -0.33998 -0.00020392 -0.1591 -9.5428E-05 599.7977915219382 62.939 0.25836 62.918 62.791 63.049 -0.021614 29 12 3 0 0 0 0.2143 1 34412 34412 21.747 3.6003 1 6675500 10287 14078 7184 7323 11692 11692 -0.00902872010988176 EWFWWYWQKEK 11 Unmodified _EWFWWYWQKEK_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MSMS AL20221201_MKP_PDAC_01 4 858.40283203125 2 858.403901 1714.79325 NaN NaN NaN NaN NaN NaN NaN 61.316 1 55.168 54.668 55.668 -6.1478 0 0 0 0.9435 1 39488 39488 0 0 1 10288 253 7185 7324 11693 11693 -0.03555620039946916 EWGGCNHDMDF 11 Unmodified _EWGGCNHDMDF_ 0 0 0 ENSG00000169884|ENST00000301061|WNT10B ENSG00000169884|ENST00000301061|WNT10B ENSG00000169884|ENST00000301061|WNT10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.7325439453125 2 655.73188 1309.44921 0.83771 0.00054931 0.9714 0.00063698 1.8091 0.0011863 655.7325056577072 63.571 0.43761 57.395 57.177 57.615 -6.1757 42 24 2 0 0 0 0.71341 1 41187 41187 2.9952 1.151 1 15825000 10289 7923 7186 7325 11694 11694 -0.19314007801631305 EWHHDDDNT 9 Unmodified _EWHHDDDNT_ 0 0 0 ENST00000461803.1_1_6:99729042-99732030:-|nuORF;nc|ENSG00000146267|Q5TGI0-2|FAXC;ENSG00000146267|ENST00000389677|FAXC ENST00000461803.1_1_6:99729042-99732030:-|nuORF ENST00000461803.1_1_6:99729042-99732030:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.9021606445312 3 390.147853 1167.42173 NaN NaN NaN NaN NaN NaN NaN 5.541 1 3.0591 2.5591 3.5591 -2.482 0 0 0 0.8622 1 2811 2811 0 0 1 10290 5767 7187 7326 11695 11695 -0.15528451745990424 EWIKILRWKLS 11 Unmodified _EWIKILRWKLS_ 0 0 0 ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF ENSG00000070190|ENST00000512369|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2997741699219 3 491.297645 1470.87111 0.67902 0.0003336 3.1815 0.0015631 3.8605 0.0018967 491.29914644296224 101.95 0.09919 95.77 95.68 95.78 -6.1757 9 4 3 0 0 0 0.7418 1 68431 68431 0.32927 0.23443 1 5658500 10291 1021 7188 7327 11696 11696 0.15450437616118506 EWIPLAWKW 9 Unmodified _EWIPLAWKW_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8300170898438 2 614.829309 1227.64407 1.1547 0.00070996 0.72931 0.0004484 1.884 0.0011584 614.8293962789268 100.2 0.26842 94.025 93.804 94.072 -6.1757 36 16 3 0 0 0 0.03568 1 66946 66946 52.268 35.155 1 75320000 10292 3095 7189 7328 11697 11697 0.03934899127989411 EWIQWRERQWD 11 Unmodified _EWIQWRERQWD_ 0 0 0 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.388916015625 2 816.389313 1630.76407 NaN NaN NaN NaN NaN NaN NaN 34.436 1 34.436 33.936 34.936 0 0 0 0 0.9435 1 18140 18140 0 0 1 + 10293 17233 7190 7329 11698 11698 -0.02607764336244145 EWIQWRERQWD 11 Unmodified _EWIQWRERQWD_ 0 0 0 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.7238159179688 2 816.389313 1630.76407 NaN NaN NaN NaN NaN NaN NaN 40.104 1 40.109 39.609 40.609 0.0050545 0 0 0 0.94313 1 21378 21378 0.26902 0 1 + 10294 17233 7190 7329 11699 11699 -0.02607764336244145 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.3324584960938 2 690.333141 1378.65173 0.31137 0.00021495 0.46692 0.00032233 0.77829 0.00053728 690.333437313608 49.809 0.95286 49.809 49.629 50.582 0 112 44 5 0 0 0 0.50515 2 27391 27391;27613 16.149 6.0752 1 62336000 10295 929 7191 7330 11700;11701 11700 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.3341674804688 2 690.333141 1378.65173 0.76946 0.00053119 -0.87175 -0.0006018 -0.10229 -7.0612E-05 690.3325242549591 50.382 1.1061 49.99 49.811 50.917 -0.3923 146 54 4 0 0 0 0.61059 1 27074 27074 10.8 5.5026 1 96333000 10296 929 7191 7330 11702 11702 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.333984375 2 690.333141 1378.65173 1.4647 0.0010111 -0.4899 -0.00033819 0.97476 0.00067291 690.3327986886151 50.068 0.44473 50.019 49.846 50.291 -0.048824 70 21 5 0 0 0 0.59689 1 27022 27022 11.495 3.3392 1 23878000 10297 929 7191 7330 11703 11703 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.3341064453125 2 690.333141 1378.65173 0.53364 0.00036839 0.98499 0.00067997 1.5186 0.0010484 690.3333779513093 52.935 0.23894 52.872 52.742 52.981 -0.063423 27 11 3 0 0 0 0.59689 1 28688 28688 11.495 5.2889 1 4091500 10298 929 7191 7330 11704 11704 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 690.333141 1378.65173 -0.0091219 -6.2972E-06 0.1664 0.00011487 0.15727 0.00010857 690.3334725718496 52.627 0.26118 52.627 52.489 52.75 0 -0.1546 -0.00058542 NaN 11.495 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5386000 10299 929 7191 7330 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 690.333141 1378.65173 0.33572 0.00023176 0.90043 0.0006216 1.2362 0.00085336 690.3337998665717 53.297 0.26207 52.845 52.742 53.005 -0.45173 0.063911 0.00042804 NaN 11.495 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3074400 10300 929 7191 7330 -0.022450381330600067 EWKPRASYDDI 11 Unmodified _EWKPRASYDDI_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 690.333141 1378.65173 0.53364 0.00036839 0.98499 0.00067997 1.5186 0.0010484 690.3333779513093 52.935 0.23894 52.872 52.742 52.981 -0.063423 0.090691 0.00054478 NaN 11.495 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4091500 10301 929 7191 7330 -0.022450381330600067 EWKQQQRKWMR 11 Unmodified _EWKQQQRKWMR_ 0 0 0 REV__nc|ENSG00000150687|O95084-2|PRSS23 REV__nc|ENSG00000150687|O95084-2|PRSS23 MSMS AL20221201_MKP_PDAC_01 4 802.416015625 2 802.417351 1602.82015 NaN NaN NaN NaN NaN NaN NaN 100.61 1 94.43 93.93 94.93 -6.1757 0 0 0 0.94184 1 67315 67315 1.1933 0 1 + 10302 29701 7192 7331 11705 11705 0.04285165299597793 EWLISEDWAL 10 Unmodified _EWLISEDWAL_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.2841186523438 2 631.308603 1260.60265 3.9123 0.0024699 2.6399 0.0016666 6.5522 0.0041365 631.3101584739435 98.518 0.1543 98.489 98.377 98.532 -0.02829 7 5 2 0 0 0 0.23634 1 54696 54696 6.7232 3.1267 1 204170 10303 9153 7193 7332 11706 11706 -0.017223264219865086 EWLLLHRRGK 10 Unmodified _EWLLLHRRGK_ 0 0 0 REV__ENST00000471707.5_1_22:20040041-20043513:+|nuORF REV__ENST00000471707.5_1_22:20040041-20043513:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 654.4191284179688 2 654.388388 1306.76222 NaN NaN NaN NaN NaN NaN NaN 105.62 1 99.441 98.941 99.941 -6.1757 0 0 0 0.99388 1 70755 70755 1.3295 0 1 + 10304 27499 7194 7333 11707 11707 0.12111271436469906 EWLLTPTEWL 10 Unmodified _EWLLTPTEWL_ 0 0 0 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8433837890625 2 644.334621 1286.65469 1.1376 0.00073302 0.26047 0.00016783 1.3981 0.00090085 644.3347399289336 97.784 0.59569 91.608 91.221 91.817 -6.1757 104 36 5 0 0 0 0.62068 1 64555 64555 10.074 0.6908 1 1653699999.9999998 + 10305 18034 7195 7334 11708 11708 0.022828369917533564 EWLMVLLLC 9 Unmodified _EWLMVLLLC_ 0 0 0 TRPM2|p.T1025M|1|0.03|ENSG00000142185|chr21:44414002-44414002|C/T|missense_variant TRPM2|p.T1025M|1|0.03|ENSG00000142185|chr21:44414002-44414002|C/T|missense_variant TRPM2|p.T1025M|1|0.03|ENSG00000142185|chr21:44414002-44414002|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3009643554688 2 560.300681 1118.58681 NaN NaN NaN NaN NaN NaN NaN 89.025 1 89.025 88.525 89.525 0 0 0 0 0.85737 1 49265 49265 0.6015 0 1 10306 30200 7196 7335 11709 11709 0.032259725357562274 EWLPLKSQME 10 Unmodified _EWLPLKSQME_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.2841186523438 2 630.818281 1259.62201 3.6317 0.0022909 2.612 0.0016477 6.2437 0.0039387 630.8201034160915 98.024 0.73493 98.005 97.733 98.468 -0.018188 44 26 2 0 0 0 0.23693 1 54696 54696 6.2058 1.8765 1 1008600 + 10307 21287 7197 7336 11710 11710 0.002583065972658005 EWLSFGHKF 9 Unmodified _EWLSFGHKF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.1945190429688 3 384.194186 1149.56073 -0.53857 -0.00020691 1.076 0.00041338 0.5374 0.00020647 384.19450207825025 56.041 0.23446 55.972 55.821 56.055 -0.068741 24 12 3 0 0 0 0.21589 1 30437 30437 21.59 0 1 11286000 10308 4534 7198 7337 11711 11711 -0.00806837319873921 EWLSFGHKF 9 Unmodified _EWLSFGHKF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7880249023438 2 575.787641 1149.56073 -0.34271 -0.00019733 0.62302 0.00035873 0.28031 0.0001614 575.7877741229713 56.035 0.20346 55.967 55.852 56.055 -0.068737 17 10 2 0 0 0 0.033587 1 30443 30443 58.679 0 1 4612100 10309 4534 7198 7337 11712 11712 -0.00806837319873921 EWLSFGHKF 9 Unmodified _EWLSFGHKF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1945190429688 3 384.194186 1149.56073 1.2361 0.0004749 -0.23375 -8.9804E-05 1.0024 0.0003851 384.52841378504814 78.74 0.61642 72.564 72.5 73.117 -6.1757 63 34 2 0 0 0 0.37578 2 51554 51554;51850 13.615 0 1 7075300 10310 4534 7198 7337 11713;11714 11713 -0.00806837319873921 EWLSFGHRF 9 Unmodified _EWLSFGHRF_ 0 0 0 nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2;nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000087053|Q13614-2|MTMR2;nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5290222167969 3 393.529569 1177.56688 0.090411 3.5579E-05 -0.025416 -1.0002E-05 0.064995 2.5578E-05 393.5294628603618 56.595 0.23861 56.526 56.4 56.638 -0.068737 18 11 2 0 0 0 0.03568 1 30778 30778 47.594 0 1 7779000 10311 1776;1448 7199 7338 11715 11715 -0.014803190883412753 EWLTQMESK 9 Oxidation (M) _EWLTQM(Oxidation (M))ESK_ EWLTQM(1)ESK EWLTQM(56)ESK 0 0 1 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-11|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2683715820312 2 584.271164 1166.52777 NaN NaN NaN NaN NaN NaN NaN 56.61 1 56.124 55.624 56.624 -0.48554 0 0 0 0.053277 1 30748 30748 56.177 6.6498 1 10312 4286 7200 7339 11716 11716 766 -0.048828322248937184 EWLVTDEPL 9 Unmodified _EWLVTDEPL_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2808227539062 2 551.276772 1100.53899 0.39483 0.00021766 1.8858 0.0010396 2.2807 0.0012573 551.2779033421818 63.054 0.55916 63.054 62.846 63.405 0 65 23 4 0 0 0 0.43463 1 35306 35306 10.824 1.4408 1 8803400 + 10313 19503 7201 7340 11717 11717 -0.007256868591184684 EWMLCGFL 8 Unmodified _EWMLCGFL_ 0 0 0 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7275390625 2 499.727349 997.440145 0.094387 4.7168E-05 -0.35724 -0.00017852 -0.26286 -0.00013136 499.7272270456698 40.414 0.26914 40.414 40.276 40.545 0 35 13 3 0 0 0 0.80143 1 21715 21715 5.7604 0 1 11060000 10314 7964 7202 7341 11718 11718 -0.05867704629349646 EWMLCGFL 8 Unmodified _EWMLCGFL_ 0 0 0 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.727349 997.440145 0.094387 4.7168E-05 -0.35724 -0.00017852 -0.26286 -0.00013136 499.7272270456698 40.414 0.26914 40.414 40.276 40.545 0 0.0024745 0.00022363 NaN 5.7604 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 11060000 10315 7964 7202 7341 -0.05867704629349646 EWMLCGFL 8 Unmodified _EWMLCGFL_ 0 0 0 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 499.727349 997.440145 0.42346 0.00021162 -2.2247 -0.0011117 -1.8012 -0.00090012 499.7266798326872 40.712 0.14273 40.409 40.318 40.461 -0.30304 -0.0024745 -0.0016428 NaN 5.7604 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 769890 10316 7964 7202 7341 -0.05867704629349646 EWPKHWPTF 9 Unmodified _EWPKHWPTF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8698120117188 3 409.869703 1226.58728 0.085643 3.5103E-05 0.53452 0.00021909 0.62017 0.00025419 409.86988342190125 61.051 0.56709 61.008 60.653 61.22 -0.04351 76 28 4 0 0 0 0.1773 2 33314 33214;33314 18.373 13.326 1 18203000 10317 1354 7203 7342 11719;11720 11720 -0.01695148428552784 EWPKHWPTF 9 Unmodified _EWPKHWPTF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.87060546875 3 409.869703 1226.58728 1.3328 0.00054629 0.0033678 1.3804E-06 1.3362 0.00054767 409.8696596362541 86.538 1.2821 80.362 79.81 81.092 -6.1757 169 69 3 0 0 0 0.047788 5 56854 56854;56985;57111;57234;57351 35.612 28.982 1 27220000 10318 1354 7203 7342 11721;11722;11723;11724;11725 11721 -0.01695148428552784 EWPKHWPTF 9 Unmodified _EWPKHWPTF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8023681640625 2 614.300916 1226.58728 1.0893 0.00066914 -0.84146 -0.00051691 0.24781 0.00015223 614.8010030189826 86.611 0.96201 80.435 80.037 80.999 -6.1757 108 52 3 0 0 0 0.025842 3 57176 57047;57176;57305 57.722 40.609 1 20161000 10319 1354 7203 7342 11726;11727;11728 11727 -0.01695148428552784 EWPKHWPTFI 10 Unmodified _EWPKHWPTFI_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5653991699219 3 447.564391 1339.67134 1.4743 0.00065986 -0.39271 -0.00017576 1.0816 0.0004841 447.56416977761046 95.87 0.29785 89.694 89.535 89.833 -6.1757 27 17 2 0 0 0 0.63089 1 63496 63496 9.544 4.8281 1 9857700 10320 1354 7204 7343 11729 11729 0.01509382668359649 EWQDQKEDHHY 11 Unmodified _EWQDQKEDHHY_ 0 0 0 ENST00000429993.1_1_2:48166891-48167098:-|nuORF ENST00000429993.1_1_2:48166891-48167098:-|nuORF ENST00000429993.1_1_2:48166891-48167098:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 757.8179931640625 2 757.818387 1513.62222 -0.0072699 -5.5093E-06 0.14553 0.00011028 0.13826 0.00010477 757.8183950337676 79.722 0.38789 79.722 79.523 79.911 0 36 16 3 0 0 0 0.74244 1 44244 44244 0.26902 0 1 587480 10321 13230 7205 7344 11730 11730 -0.11404602149195853 EWQTRWFYP 9 Unmodified _EWQTRWFYP_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2;ENST00000471817.2_1_20:60866739-60868940:+|nuORF ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.8112182617188 2 656.809105 1311.60366 0.47891 0.00031455 0.21928 0.00014402 0.69819 0.00045857 656.8092504761097 88.471 0.29855 88.525 88.354 88.652 0.053352 29 12 3 0 0 0 0.16226 1 49193 49193 26.884 6.43 1 25016000 10322 4240 7206 7345 11731 11731 -0.03968067262439945 EWRAQSEYSW 10 Unmodified _EWRAQSEYSW_ 0 0 0 ENSG00000241106|ENST00000438763|HLA-DOB ENSG00000241106|ENST00000438763|HLA-DOB ENSG00000241106|ENST00000438763|HLA-DOB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.365478515625 2 671.296559 1340.57856 NaN NaN NaN NaN NaN NaN NaN 100.77 1 100.73 100.23 101.23 -0.04216 0 0 0 0.99248 1 55982 55982 1.4819 0 1 10323 10679 7207 7346 11732 11732 -0.07810166855665557 EWREARKLWWW 11 Unmodified _EWREARKLWWW_ 0 0 0 ENST00000381989.3_1_13:25072288-25074457:-|nuORF ENST00000381989.3_1_13:25072288-25074457:-|nuORF ENST00000381989.3_1_13:25072288-25074457:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.424072265625 2 823.422959 1644.83137 1.4283 0.0011761 0.12355 0.00010174 1.5518 0.0012778 823.4227892595511 97.787 0.1341 91.612 91.553 91.687 -6.1757 12 9 2 0 0 0 0.74279 1 64806 64806 0.23584 0 1 14613000 10324 12623 7208 7347 11733 11733 0.034743106653877476 EWRLRQAM 8 Unmodified _EWRLRQAM_ 0 0 0 REV__ENST00000551766.5_1_16:22431078-22431231:-|nuORF REV__ENST00000551766.5_1_16:22431078-22431231:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8596801757812 3 363.858921 1088.55493 1.8013 0.00065543 0.10273 3.7379E-05 1.9041 0.00069281 363.8589837421945 20.375 0.36185 17.682 17.559 17.921 -2.693 48 19 3 0 0 0 0.79669 1 10804 10804 10.074 2.465 1 5876800 + 10325 28718 7209 7348 11734 11734 0.014197408968129821 EWRRQLVRL 9 Unmodified _EWRRQLVRL_ 0 0 0 ENSG00000041802|ENST00000265245|LSG1 ENSG00000041802|ENST00000265245|LSG1 ENSG00000041802|ENST00000265245|LSG1 MSMS AL20221201_MKP_PDAC_01 4 628.3744506835938 2 628.372738 1254.73092 NaN NaN NaN NaN NaN NaN NaN 104.5 1 98.32 97.82 98.82 -6.1757 0 0 0 0.85852 1 69976 69976 0.45834 0 1 10326 656 7210 7349 11735 11735 0.11374698402414651 EWSESPLFF 9 Unmodified _EWSESPLFF_ 0 0 0 REV__ENSG00000283297|ENST00000637658|TEX52 REV__ENSG00000283297|ENST00000637658|TEX52 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2667846679688 2 571.263665 1140.51278 NaN NaN NaN NaN NaN NaN NaN 91.799 1 91.799 91.299 92.299 0 0 0 0 0.84564 1 50765 50765 2.0598 0.21551 1 + 10327 24690 7211 7350 11736 11736 -0.051859560305729246 EWSNIESI 8 Unmodified _EWSNIESI_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.23291015625 2 489.232364 976.450176 0.53715 0.00026279 -0.21275 -0.00010408 0.3244 0.00015871 489.23215512424844 57.482 0.31686 57.482 57.281 57.597 0 38 14 4 0 0 0 0.72953 1 31940 31940 14.582 0 1 7716000 10328 6217 7212 7351 11737 11737 -0.0389910209877371 EWSNIESI 8 Unmodified _EWSNIESI_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2321472167969 2 489.232364 976.450176 0.46775 0.00022884 -0.15956 -7.8063E-05 0.30819 0.00015078 489.23237951475943 58.077 0.24973 57.587 57.43 57.68 -0.48974 21 11 2 0 0 0 0.61462 1 31550 31550 24.674 0 1 3918500 10329 6217 7212 7351 11738 11738 -0.0389910209877371 EWSNIESI 8 Unmodified _EWSNIESI_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.232364 976.450176 0.46775 0.00022884 -0.15956 -7.8063E-05 0.30819 0.00015078 489.23237951475943 58.077 0.24973 57.587 57.43 57.68 -0.48974 0.052394 1.9744E-05 NaN 24.674 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3918500 10330 6217 7212 7351 -0.0389910209877371 EWSPYTKIFQF 11 Unmodified _EWSPYTKIFQF_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 723.8621215820312 2 723.358628 1444.7027 0.32208 0.00023298 1.5022 0.0010866 1.8243 0.0013196 723.3598391325307 87.357 0.18874 86.853 86.734 86.923 -0.50423 10 7 2 0 0 0 0.71341 1 47791 47791 2.9952 1.5133 1 462450 10331 3240 7213 7352 11739 11739 -0.0018608908821988734 EWSPYTKIFQF 11 Unmodified _EWSPYTKIFQF_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 723.3572998046875 2 723.358628 1444.7027 -0.14902 -0.00010779 -0.1277 -9.2375E-05 -0.27672 -0.00020017 723.3587435796743 86.463 0.33272 86.521 86.339 86.671 0.05822 34 19 3 0 0 0 4.0010999999999997E-28 3 47942 47942;48068;48090 155.95 135.54 1 57399000 10332 3240 7213 7352 11740;11741;11742 11740 -0.0018608908821988734 EWSPYTKIFQF 11 Unmodified _EWSPYTKIFQF_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.3601684570312 2 723.358628 1444.7027 0.71324 0.00051593 -0.1041 -7.5303E-05 0.60914 0.00044063 723.3584177692613 98.528 0.18747 92.352 92.253 92.441 -6.1757 54 13 5 0 0 0 1.2228E-52 1 65319 65319 200.32 169.68 1 832140000 10333 3240 7213 7352 11743 11743 -0.0018608908821988734 EWTLWRLHF 9 Unmodified _EWTLWRLHF_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8402709960938 2 644.33529 1286.65603 1.1376 0.00073302 -0.77734 -0.00050087 0.36029 0.00023215 644.3347399289336 97.784 0.59569 91.608 91.221 91.817 -6.1757 104 36 5 0 0 0 0.48152 1 64673 64673 8.5933 0.98433 1 1653699999.9999998 + 10334 20095 7214 7353 11744 11744 0.02416515871163938 EWTVDTSKLVF 11 Unmodified _EWTVDTSKLVF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.3448486328125 2 662.84281 1323.67107 -0.83293 -0.0005521 -0.72774 -0.00048237 -1.5607 -0.0010345 662.8422482846173 77.914 0.26291 77.431 77.312 77.575 -0.4826 59 25 3 0 0 0 0.16638 2 42624 42624;42732 49.527 27.937 1 11351000 10335 1675 7215 7354 11745;11746 11745 0.02217918157839449 EWTVDTSKLVF 11 Unmodified _EWTVDTSKLVF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.3450927734375 2 662.84281 1323.67107 0.43755 0.00029003 0.078537 5.2057E-05 0.51609 0.00034208 662.8428051127494 77.384 0.31095 77.434 77.272 77.583 0.050102 39 12 4 0 0 0 0.064626 2 42670 42670;42774 64.927 40.045 1 16439000 10336 1675 7215 7354 11747;11748 11747 0.02217918157839449 EWTVDTSKLVF 11 Unmodified _EWTVDTSKLVF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8432006835938 2 662.84281 1323.67107 0.7696 0.00051013 -0.054941 -3.6417E-05 0.71466 0.00047371 662.8428088511572 89.111 1.1363 82.936 82.24 83.376 -6.1757 154 63 3 0 0 0 0.00022597 5 58590 58465;58590;58715;58848;58972 118.21 81.135 1 39191000 10337 1675 7215 7354 11749;11750;11751;11752;11753 11750 0.02217918157839449 EWVVKLYY 8 Unmodified _EWVVKLYY_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1999816894531 3 367.198937 1098.57498 NaN NaN NaN NaN NaN NaN NaN 48.156 1 48.117 47.617 48.617 -0.038643 0 0 0 0.97444 1 25969 25969 1.6526 0.45928 1 10338 6056 7216 7355 11754 11754 0.029638151084100173 EWWIRSKYE 9 Unmodified _EWWIRSKYE_ 0 0 0 nc|ENSG00000204172|Q5VTM2|AGAP9;ENSG00000204172|ENST00000452145|AGAP9 nc|ENSG00000204172|Q5VTM2|AGAP9 nc|ENSG00000204172|Q5VTM2|AGAP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8838500976562 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 55.364 1 55.295 54.795 55.795 -0.068737 0 0 0 0.84543 1 30086 30086 2.086 0.75636 1 10339 16500 7217 7356 11755 11755 -0.006117980909266407 EWWYLHYIYFS 11 Unmodified _EWWYLHYIYFS_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.8707275390625 2 803.871902 1605.72925 -0.82201 -0.00066079 -0.72498 -0.00058279 -1.547 -0.0012436 803.8713430081589 35.81 0.33788 35.587 35.393 35.731 -0.2224 55 14 5 0 0 0 0.65108 2 18792 18694;18792 8.7454 5.7502 1 34780000 + 10340 19826 7218 7357 11756;11757 11757 -0.049384001968746816 EWWYLHYIYFS 11 Unmodified _EWWYLHYIYFS_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 803.8709716796875 2 803.871902 1605.72925 0.13422 0.0001079 -0.84616 -0.00068021 -0.71194 -0.00057231 803.8712647379137 35.482 0.27317 35.507 35.351 35.624 0.024971 42 12 5 0 0 0 0.68427 1 18729 18729 5.7319 2.7366 1 16389000 + 10341 19826 7218 7357 11758 11758 -0.049384001968746816 EWWYLHYIYFS 11 Unmodified _EWWYLHYIYFS_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 803.871902 1605.72925 -0.82201 -0.00066079 -0.72498 -0.00058279 -1.547 -0.0012436 803.8713430081589 35.81 0.33788 35.587 35.393 35.731 -0.2224 0.039924 6.6072E-05 NaN 8.7454 55 14 5 NaN NaN NaN NaN 0 NaN NaN 0 34780000 + 10342 19826 7218 7357 -0.049384001968746816 EWWYLHYIYFS 11 Unmodified _EWWYLHYIYFS_ 0 0 0 REV__ENSG00000132017|ENST00000254337|DCAF15 REV__ENSG00000132017|ENST00000254337|DCAF15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 803.871902 1605.72925 0.13422 0.0001079 -0.84616 -0.00068021 -0.71194 -0.00057231 803.8712647379137 35.482 0.27317 35.507 35.351 35.624 0.024971 -0.039924 -0.00012877 NaN 8.7454 42 12 5 NaN NaN NaN NaN 0 NaN NaN 0 16389000 + 10343 19826 7218 7357 -0.049384001968746816 EWYHCGTTF 9 Unmodified _EWYHCGTTF_ 0 0 0 REV__ENSG00000164010|ENST00000372517|ERMAP REV__ENSG00000164010|ENST00000372517|ERMAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2322998046875 2 572.231842 1142.44913 NaN NaN NaN NaN NaN NaN NaN 93.152 1 92.695 92.195 93.195 -0.4574 0 0 0 0.84564 1 50911 50911 2.0598 1.2661 1 + 10344 21847 7219 7358 11759 11759 -0.11639639739314589 EWYWTPHSF 9 Unmodified _EWYWTPHSF_ 0 0 0 REV__nc|ENSG00000112038|P35372-15|OPRM1 REV__nc|ENSG00000112038|P35372-15|OPRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.77490234375 2 626.774731 1251.53491 NaN NaN NaN NaN NaN NaN NaN 21.339 1 21.339 20.839 21.839 0 0 0 0 0.84564 1 10790 10790 2.0598 0 1 + 10345 18781 7220 7359 11760 11760 -0.08079731562156667 EWYYQIEI 8 Unmodified _EWYYQIEI_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000491838.5_1_21:42598231-42618026:+|nuORF;ENST00000463674.5_1_21:42613685-42647548:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5431823730469 3 381.850085 1142.52843 NaN NaN NaN NaN NaN NaN NaN 18.43 1 18.43 17.93 18.93 0 0 0 0 0.97444 1 9162 9162 0.45834 0 1 10346 9034 7221 7360 11761 11761 -0.03713669513535933 EYAAINSML 9 Oxidation (M) _EYAAINSM(Oxidation (M))L_ EYAAINSM(1)L EYAAINSM(100)L 0 0 1 chr9:128159621-128163443|45|28.2|0.86|5.03|+|2|None,BBLN|1;ENSG00000171159|ENST00000372994|BBLN chr9:128159621-128163443|45|28.2|0.86|5.03|+|2|None,BBLN|1 chr9:128159621-128163443|45|28.2|0.86|5.03|+|2|None,BBLN|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2418823242188 2 514.241875 1026.4692 0.52085 0.00026784 -0.35223 -0.00018113 0.16862 8.6711E-05 514.2418489736854 47.924 0.36624 47.924 47.725 48.092 0 55 17 4 0 0 0 0.0088174 2 26207 26207;26313 103.75 46.277 1 23369000 10347 125 7222 7361 11762;11763 11762 5 -0.042978887993513126 EYAAQLQNF 9 Unmodified _EYAAQLQNF_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2583618164062 2 542.258914 1082.50327 0.43465 0.00023569 -0.23481 -0.00012733 0.19984 0.00010837 542.2584167566728 52.939 0.28147 52.939 52.798 53.08 0 29 13 3 0 0 0 0.0095811 1 29375 29375 81.613 49.308 1 11253000 10348 4989 7223 7362 11764 11764 -0.03467724316078602 EYAAQLQNF 9 Unmodified _EYAAQLQNF_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2598266601562 2 542.258914 1082.50327 1.0188 0.00055245 0.35314 0.00019149 1.3719 0.00074394 542.2590430526557 60.786 0.31612 54.638 54.462 54.778 -6.1478 23 16 2 0 0 0 0.013041 1 39092 39092 71.922 42.841 1 17911000 10349 4989 7223 7362 11765 11765 -0.03467724316078602 EYAAQLQRF 9 Unmodified _EYAAQLQRF_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.287109375 2 563.288005 1124.56146 0.12172 6.8565E-05 0.17743 9.9947E-05 0.29916 0.00016851 563.2881872618448 43.57 0.25309 43.57 43.418 43.671 0 26 11 3 0 0 0 0.0082548 1 23642 23642 120.45 72.105 1 21862000 10350 3875 7224 7363 11766 11766 0.004159573291872221 EYAAQLQRF 9 Unmodified _EYAAQLQRF_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.289794921875 2 563.288005 1124.56146 0.21991 0.00012387 1.9936 0.001123 2.2135 0.0012469 563.2892764775384 43.805 0.15994 43.495 43.403 43.563 -0.31039 17 7 3 0 0 0 0.044296 1 23312 23312 61.357 35.958 1 30792000 10351 3875 7224 7363 11767 11767 0.004159573291872221 EYAAQLQRF 9 Unmodified _EYAAQLQRF_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2886352539062 2 563.288005 1124.56146 0.82395 0.00046412 -0.095103 -5.357E-05 0.72885 0.00041055 563.2878017421006 49.04 0.32661 43.644 43.458 43.784 -5.3961 32 21 2 0 0 0 0.017075 1 30566 30566 85.357 66.1 1 67112000 10352 3875 7224 7363 11768 11768 0.004159573291872221 EYAEWLRNHF 10 Unmodified _EYAEWLRNHF_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.5504150390625 3 455.550921 1363.63093 1.0607 0.00048318 -0.27193 -0.00012388 0.78873 0.00035931 455.5506582659668 57.533 0.21485 57.467 57.339 57.554 -0.066036 24 10 3 0 0 0 0.40136 1 31287 31287 14.218 11.783 1 3390800 10353 5680 7225 7364 11769 11769 -0.03633583722057665 EYAEWLRNHF 10 Unmodified _EYAEWLRNHF_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 455.550921 1363.63093 0.24764 0.00011281 -1.5586 -0.00071001 -1.3109 -0.0005972 455.88465120775714 57.895 0.12155 57.405 57.35 57.471 -0.48974 -0.030917 -0.0014227 NaN 14.218 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1165300 10354 5680 7225 7364 -0.03633583722057665 EYAHLFEVF 9 Unmodified _EYAHLFEVF_ 0 0 0 nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317 nc|ENSG00000130803|Q96PQ6-3|ZNF317 nc|ENSG00000130803|Q96PQ6-3|ZNF317 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2820434570312 2 577.779482 1153.54441 0.99261 0.00057351 0.92557 0.00053477 1.9182 0.0011083 577.7798740908518 80.264 0.45129 79.774 79.533 79.984 -0.48932 65 17 5 0 0 0 0.023164 1 43934 43934 60.39 9.5345 1 18672000 10355 4263 7226 7365 11770 11770 -0.026219632766242285 EYAHLFEVF 9 Unmodified _EYAHLFEVF_ 0 0 0 nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317 nc|ENSG00000130803|Q96PQ6-3|ZNF317 nc|ENSG00000130803|Q96PQ6-3|ZNF317 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.778076171875 2 577.779482 1153.54441 1.4669 0.00084753 -2.3224 -0.0013419 -0.85557 -0.00049433 577.777817771518 97.342 0.30319 91.166 90.992 91.295 -6.1757 42 16 3 0 0 0 0.03327 1 64488 64488 53.576 9.1686 1 92148000 10356 4263 7226 7365 11771 11771 -0.026219632766242285 EYAKDLHKL 9 Unmodified _EYAKDLHKL_ 0 0 0 REV__ENSG00000121281|ENST00000673801|ADCY7 REV__ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.305908203125 2 558.806031 1115.59751 1.0376 0.00057982 -1.5959 -0.00089181 -0.55831 -0.00031199 559.307433604642 34.679 0.3327 30.584 30.438 30.771 -4.0951 63 19 4 0 0 0 0.45045 1 19957 19957 10.074 2.1638 1 28012000 + 10357 19285 7227 7366 11772 11772 0.04433414506047484 EYAKIEETM 9 Oxidation (M) _EYAKIEETM(Oxidation (M))_ EYAKIEETM(1) EYAKIEETM(140) 0 0 1 nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 nc|ENSG00000081803|Q86UW7-3|CADPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2554321289062 2 565.257722 1128.50089 0.59703 0.00033748 -0.61117 -0.00034547 -0.01414 -7.9925E-06 565.2572811129918 26.492 0.30003 23.541 23.374 23.674 -2.9511 42 15 3 0 0 0 0.0014462 2 14548 14548;14667 136.39 73.819 1 26285000 10358 1331 7228 7367 11773;11774 11773 224 -0.058219408360855596 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2864990234375 2 568.28714 1134.55973 0.49914 0.00028366 0.31048 0.00017644 0.80962 0.0004601 568.2873478509206 53.034 0.3235 52.582 52.419 52.742 -0.45173 43 16 3 0 0 0 0.15882 2 28629 28629;28737 36.127 23.886 1 15026000 10359 1461 7229 7368 11775;11776 11775 -0.0021709647940042487 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2885131835938 2 568.28714 1134.55973 1.439 0.00081775 -0.17503 -9.9466E-05 1.2639 0.00071828 568.2869389879284 59.043 0.39346 52.969 52.798 53.192 -6.0745 39 21 2 0 0 0 0.37578 1 37860 37860 19.257 7.0163 1 41455000 10360 1461 7229 7368 11777 11777 -0.0021709647940042487 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.28714 1134.55973 0.80909 0.0004598 0.58441 0.00033212 1.3935 0.00079191 568.2869896294819 52.688 0.22199 52.627 52.484 52.706 -0.061169 -0.099124 0.00049164 NaN 36.127 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1396600 10361 1461 7229 7368 -0.0021709647940042487 EYAKIFTTY 9 Unmodified _EYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 568.28714 1134.55973 1.439 0.00081775 -0.17503 -9.9466E-05 1.2639 0.00071828 568.2869389879284 59.043 0.39346 52.969 52.798 53.192 -6.0745 0.24282 -0.00037152 NaN 36.127 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 41455000 10362 1461 7229 7368 -0.0021709647940042487 EYAKIHDLL 9 Unmodified _EYAKIHDLL_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8701477050781 3 367.86948 1100.58661 1.6621 0.00061144 -0.47971 -0.00017647 1.1824 0.00043497 367.86931742706173 50.856 0.34442 45.207 45.071 45.415 -5.649 35 20 2 0 0 0 0.30562 1 31901 31901 16.149 7.1729 1 37801000 10363 8104 7230 7369 11778 11778 0.04034012131774034 EYAKTFGYTF 10 Unmodified _EYAKTFGYTF_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7886962890625 2 613.790047 1225.56554 -0.13561 -8.3234E-05 0.56722 0.00034815 0.43161 0.00026492 613.7901585364178 56.754 0.23707 56.268 56.153 56.39 -0.48554 26 11 3 0 0 0 0.16524 1 30812 30812 37.974 18.717 1 4064400 10364 7529 7231 7370 11779 11779 -0.03821997967770585 EYAKTFGYTF 10 Unmodified _EYAKTFGYTF_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.290771484375 2 613.790047 1225.56554 1.5204 0.00093319 -1.0506 -0.00064482 0.46983 0.00028837 613.7894968405159 62.476 0.58742 56.3 56.088 56.676 -6.1757 47 30 2 0 0 0 0.03037 2 40243 40243;40383 67.838 35.052 1 19548000 10365 7529 7231 7370 11780;11781 11780 -0.03821997967770585 EYALLYHTL 9 Unmodified _EYALLYHTL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.796142578125 2 561.795132 1121.57571 0.43943 0.00024687 -0.28165 -0.00015823 0.15778 8.8639E-05 561.7950716514595 65.247 0.42416 64.763 64.555 64.979 -0.48428 78 19 5 0 0 0 0.008513 2 35546 35546;35643 125.62 92.822 1 221690000 10366 263 7232 7371 11782;11783 11782 0.019786097574751693 EYALLYHTL 9 Unmodified _EYALLYHTL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7960205078125 2 561.795132 1121.57571 1.1073 0.00062206 -0.54579 -0.00030662 0.56148 0.00031544 561.7953947032379 64.778 0.37847 64.778 64.578 64.956 1.5259E-05 44 17 4 0 0 0 0.008513 1 35445 35445 125.62 89.58 1 16128000 10367 263 7232 7371 11784 11784 0.019786097574751693 EYALLYHTL 9 Unmodified _EYALLYHTL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.796142578125 2 561.795132 1121.57571 1.0012 0.00056245 -0.044972 -2.5265E-05 0.9562 0.00053719 561.7952667034423 69.978 1.1231 63.802 63.41 64.533 -6.1757 137 62 3 0 0 0 0.012668 5 45547 45524;45547;45664;45793;46096 92.822 69.032 1 251580000 10368 263 7232 7371 11785;11786;11787;11788;11789 11786 0.019786097574751693 EYALLYHTL 9 Unmodified _EYALLYHTL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7965698242188 2 561.795132 1121.57571 1.1806 0.00066323 0.8208 0.00046112 2.0013 0.0011243 561.7958720947044 72.032 1.9811 65.856 65.367 67.348 -6.1757 240 102 3 0 0 0 0.010301 6 47486 46989;47132;47254;47364;47486;47605 100.37 62.397 1 97153000 10369 263 7232 7371 11790;11791;11792;11793;11794;11795 11794 0.019786097574751693 EYALSFTVET 10 Unmodified _EYALSFTVET_ 0 0 0 REV__ENSG00000102313|ENST00000218436|ITIH6 REV__ENSG00000102313|ENST00000218436|ITIH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2772216796875 2 580.279512 1158.54447 0.68598 0.00039806 0.061244 3.5538E-05 0.74722 0.0004336 580.2801975589994 43.139 0.40845 38.374 38.21 38.618 -4.7648 89 28 5 0 0 0 0.35903 1 26093 26093 24.021 1.2843 1 65106000 + 10370 18233 7233 7372 11796 11796 -0.028460080672857657 EYALSVLHSY 10 Unmodified _EYALSVLHSY_ 0 0 0 REV__ENST00000398379.2_1_7:75104068-75113489:-|nuORF REV__ENST00000398379.2_1_7:75104068-75113489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2955932617188 2 591.295496 1180.57644 -0.1604 -9.4845E-05 1.9622 0.0011603 1.8018 0.0010654 591.2960547279932 76.83 0.38399 76.351 76.177 76.561 -0.47945 39 17 3 0 0 0 0.54684 1 42121 42121 13.906 3.8321 1 3250400 + 10371 26474 7234 7373 11797 11797 -0.006625955934623562 EYANGGELFF 10 Unmodified _EYANGGELFF_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000580878.1_1_19:40741997-40745051:-|nuORF;ENST00000483166.5_1_19:40743617-40745051:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2;nc|ENSG00000142208|P31749-2|AKT1;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2860717773438 2 573.758746 1145.50294 0.38767 0.00022243 -0.40609 -0.000233 -0.018421 -1.0569E-05 574.2589874781212 63.685 0.25933 63.685 63.52 63.779 0 15 10 2 0 0 0 0.23745 1 35572 35572 5.7319 1.4026 1 473380 10372 2289;5402;14067 7235 7374 11798 11798 -0.06399144035935933 EYAQALKNSF 10 Unmodified _EYAQALKNSF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7924194335938 2 585.793121 1169.57169 0.0059772 3.5014E-06 -2.0872 -0.0012227 -2.0812 -0.0012192 585.7915298182493 42.123 0.52943 42.123 41.769 42.299 0 69 27 4 0 0 0 8.3247E-06 2 22769 22769;22884 128.93 94.83 1 48576000 10373 10367 7236 7375 11799;11800 11799 -0.00631479736239271 EYAQALKNSF 10 Unmodified _EYAQALKNSF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7926025390625 2 585.793121 1169.57169 -0.060257 -3.5298E-05 -0.83945 -0.00049174 -0.8997 -0.00052704 585.7922224599271 42.441 0.2381 42.134 41.98 42.218 -0.30682 19 11 2 0 0 0 4.0285E-07 1 22527 22527 137.42 97.466 1 39759000 10374 10367 7236 7375 11801 11801 -0.00631479736239271 EYAQLFAAL 9 Unmodified _EYAQLFAAL_ 0 0 0 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2694091796875 2 513.26875 1024.52295 0.36066 0.00018512 -1.9412 -0.00099638 -1.5806 -0.00081126 513.2672822224656 88.671 0.25278 88.167 88.046 88.298 -0.50423 17 10 2 0 0 0 0.2143 1 48475 48475 21.747 10.923 1 507360 10375 6222 7237 7376 11802 11802 0.011666516946434058 EYAQVIKML 9 Oxidation (M) _EYAQVIKM(Oxidation (M))L_ EYAQVIKM(1)L EYAQVIKM(46)L 0 0 1 ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX ENST00000465253.1_1_Y:22737757-22750047:+|nuORF ENST00000465253.1_1_Y:22737757-22750047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7977905273438 2 555.796817 1109.57908 0.74022 0.00041141 -2.516 -0.0013984 -1.7757 -0.00098695 556.2964628080196 49.939 0.22015 49.939 49.812 50.032 0 20 9 3 0 0 0 0.047196 1 27505 27505 46.021 16.939 1 2647900 10376 8353 7238 7377 11803 11803 1408 0.02867536539838511 EYARQLEMI 9 Oxidation (M) _EYARQLEM(Oxidation (M))I_ EYARQLEM(1)I EYARQLEM(62)I 0 0 1 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7897338867188 2 584.786981 1167.55941 0.62115 0.00036324 2.8815 0.001685 3.5026 0.0020483 584.7896322154629 45.638 0.24123 40.683 40.504 40.745 -4.9549 23 15 2 0 0 0 0.021948 1 28000 28000 61.602 21.645 1 14941000 10377 1696 7239 7378 11804 11804 291 -0.017668394709289714 EYARQLEMI 9 Unmodified _EYARQLEMI_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7907104492188 2 576.789524 1151.56449 0.5969 0.00034429 2.4612 0.0014196 3.0581 0.0017639 576.7912590584087 56.879 0.2876 50.902 50.719 51.007 -5.9769 24 16 2 0 0 0 0.023481 1 36372 36372 60.074 1.3951 1 18174000 10378 1696 7239 7379 11805 11805 -0.005225356082974031 EYASGPEFV 9 Unmodified _EYASGPEFV_ 0 0 0 REV__ENST00000396077.7_1_3:44488076-44488133:-|nuORF REV__ENST00000396077.7_1_3:44488076-44488133:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.4479370117188 1 998.446553 997.439277 -0.72751 -0.00072638 1.2831 0.0012811 0.55562 0.00055475 998.4479681938511 48.683 0.48004 48.683 48.452 48.932 0 52 22 3 0 0 0 0.042911 1 26759 26759 48.346 6.5062 1 4095400 + 10379 26498 7240 7380 11806 11806 -0.059545044730271 EYASLIGWKF 10 Unmodified _EYASLIGWKF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3153686523438 2 607.316232 1212.61791 NaN NaN NaN NaN NaN NaN NaN 82.836 1 82.338 81.838 82.838 -0.49751 0 0 0 0.92825 1 45346 45346 6.7232 1.9672 1 10380 5021 7241 7381 11807 11807 0.020105851658399843 EYASLIGWKF 10 Unmodified _EYASLIGWKF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3163452148438 2 607.316232 1212.61791 1.5311 0.00092985 -0.99272 -0.00060289 0.53836 0.00032696 607.8171766503677 82.232 0.34918 82.294 82.125 82.474 0.061996 35 13 4 0 0 0 0.051223 2 45466 45466;45577 57.722 33.701 1 33773000 10381 5021 7241 7381 11808;11809 11808 0.020105851658399843 EYASLIGWKF 10 Unmodified _EYASLIGWKF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3177490234375 2 607.316232 1212.61791 0.88833 0.00053949 0.12996 7.8926E-05 1.0183 0.00061842 607.3162083648879 96.932 0.34131 90.757 90.587 90.929 -6.1757 59 19 4 0 0 0 0.015688 2 64171 64171;64292 79.596 41.622 1 123740000 10382 5021 7241 7381 11810;11811 11810 0.020105851658399843 EYASVLQLL 9 Unmodified _EYASVLQLL_ 0 0 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7901611328125 2 518.289682 1034.56481 0.83599 0.00043329 -2.0237 -0.0010489 -1.1878 -0.0006156 518.7905020683742 100.68 0.20645 94.505 94.445 94.651 -6.1757 26 14 3 0 0 0 0.013472 2 67378 67378;67413 70.716 46.042 1 47275000 10383 4692 7242 7382 11812;11813 11812 0.048912073832070746 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2013549804688 3 372.201229 1113.58186 -0.17362 -6.4621E-05 0.21775 8.1046E-05 0.04413 1.6425E-05 372.2012846355653 31.041 0.26193 31.041 30.912 31.174 0 35 12 3 0 0 0 0.11784 1 16134 16134 29.437 22.335 1 39630000 10384 797 7243 7383 11814 11814 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7986450195312 2 557.798206 1113.58186 0.17893 9.9808E-05 0.47524 0.00026509 0.65417 0.0003649 557.7983678637542 31.043 0.24061 31.043 30.912 31.152 0 25 11 3 0 0 0 0.0061223 1 16142 16142 114.2 65.856 1 6708800 10385 797 7243 7383 11815 11815 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2009887695312 3 372.201229 1113.58186 0.34073 0.00012682 0.018317 6.8176E-06 0.35904 0.00013364 372.2012294777459 31.038 0.31709 30.935 30.792 31.109 -0.10269 31 12 3 0 0 0 0.18144 1 16108 16108 23.801 17.609 1 32825000 10386 797 7243 7383 11816 11816 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7984619140625 2 557.798206 1113.58186 0.54827 0.00030582 0.26149 0.00014586 0.80976 0.00045168 557.7982033677907 31.051 0.23746 30.948 30.815 31.053 -0.10269 23 9 3 0 0 0 0.0081887 1 16109 16109 93.166 31.808 1 5598200 10387 797 7243 7383 11817 11817 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2015380859375 3 372.201229 1113.58186 -0.17547 -6.5308E-05 0.47256 0.00017589 0.2971 0.00011058 372.2014195608049 30.837 0.36602 30.867 30.649 31.015 0.030104 31 15 3 0 0 0 0.1685 1 16152 16152 19.626 7.3853 1 4654000 10388 797 7243 7383 11818 11818 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2015075683594 3 372.201229 1113.58186 1.4391 0.00053564 0.56945 0.00021195 2.0086 0.00074759 372.2011165097098 34.687 0.58751 30.592 30.348 30.935 -4.0951 150 34 6 0 0 0 0.062454 3 19913 19913;20041;20172 32.898 25.796 1 297370000 10389 797 7243 7383 11819;11820;11821 11819 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7987060546875 2 557.798206 1113.58186 1.004 0.00056003 -0.026268 -1.4652E-05 0.97774 0.00054538 557.7981688576975 34.651 0.48994 30.556 30.366 30.856 -4.0951 53 28 2 0 0 0 8.5409E-07 2 19930 19930;20064 163.69 102.33 1 98419000 10390 797 7243 7383 11822;11823 11822 0.029611279890104925 EYATKISRF 9 Unmodified _EYATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 557.798206 1113.58186 0.15129 8.4387E-05 0.84614 0.00047197 0.99742 0.00055636 557.7980868277883 30.83 0.14514 30.86 30.759 30.904 0.030106 0.0081709 0.00070897 NaN 163.69 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 868880 10391 797 7243 7383 0.029611279890104925 EYAVLTSTI 9 Unmodified _EYAVLTSTI_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.5234375 1 996.524804 995.517527 -0.027948 -2.7851E-05 -0.2728 -0.00027185 -0.30075 -0.0002997 996.5244725766888 63.327 0.49084 63.327 63.122 63.612 0 66 24 4 0 0 0 0.0048787 2 35349 35250;35349 117.6 32.242 1 26008000 10392 7748 7244 7384 11824;11825 11825 0.01958928112196645 EYAVLTSTI 9 Unmodified _EYAVLTSTI_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7659606933594 2 498.76604 995.517527 0.3328 0.00016599 0.82471 0.00041134 1.1575 0.00057733 498.7664391404745 63.348 0.56306 63.348 63.096 63.659 0 92 27 5 0 0 0 0.010877 2 35264 35264;35363 77.984 47.76 1 47492000 10393 7748 7244 7384 11826;11827 11826 0.01958928112196645 EYAVLTSTI 9 Unmodified _EYAVLTSTI_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.5248413085938 1 996.524804 995.517527 0.37065 0.00036937 -0.059872 -5.9664E-05 0.31078 0.0003097 996.5250511854623 63.862 0.23867 63.377 63.234 63.473 -0.48512 23 13 2 0 0 0 0.0095811 1 34784 34784 81.613 39.519 1 3617500 10394 7748 7244 7384 11828 11828 0.01958928112196645 EYAVLTSTI 9 Unmodified _EYAVLTSTI_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.5407104492188 1 996.524804 995.517527 0.94877 0.00094548 2.5151 0.0025064 3.4639 0.0034518 996.5280914939713 70.959 0.53 64.783 64.496 65.026 -6.1757 41 26 2 0 0 0 0.012148 2 46388 46325;46388 74.423 32.328 1 70533000 10395 7748 7244 7384 11829;11830 11830 0.01958928112196645 EYCELCKHRF 10 2 Carbamidomethyl (C) _EYC(Carbamidomethyl (C))ELC(Carbamidomethyl (C))KHRF_ EYC(1)ELC(1)KHRF EYC(50)ELC(50)KHRF 0 2 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.216796875 3 481.216556 1440.62784 0.86539 0.00041644 -0.60294 -0.00029015 0.26244 0.00012629 481.2164644823595 28.767 0.32439 25.619 25.439 25.764 -3.1482 44 15 4 0 0 0 0.086206 1 16142 16142 49.742 43.874 1 87770000 10396 5701 7245 7385 11831 11831 583;584 -0.07484918162731447 EYCKWLQIL 9 Carbamidomethyl (C) _EYC(Carbamidomethyl (C))KWLQIL_ EYC(1)KWLQIL EYC(100)KWLQIL 0 1 0 ENST00000273963.9_1_4:88116675-88116732:-|nuORF ENST00000273963.9_1_4:88116675-88116732:-|nuORF ENST00000273963.9_1_4:88116675-88116732:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8237915039062 2 626.823366 1251.63218 1.0406 0.00065228 1.1433 0.00071668 2.184 0.001369 626.8240079566551 97.854 0.16471 91.678 91.6 91.765 -6.1757 21 10 3 0 0 0 0.0085164 1 64851 64851 99.799 51.453 1 22401000 10397 11382 7246 7386 11832 11832 964 0.016429143224740983 EYCLPCFYF 9 Unmodified _EYCLPCFYF_ 0 0 0 ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7440795898438 2 592.743196 1183.47184 0.076687 4.5456E-05 0.12187 7.2235E-05 0.19855 0.00011769 592.743332340924 75.873 0.30924 75.873 75.672 75.981 0 34 13 3 0 0 0 0.58466 1 42240 42240 2.3027 0 1 1846900 10398 14927 7247 7387 11833 11833 -0.11255756666059824 EYCMYYNRF 9 Carbamidomethyl (C),Oxidation (M) _EYC(Carbamidomethyl (C))M(Oxidation (M))YYNRF_ EYC(1)MYYNRF EYCM(1)YYNRF EYC(71)MYYNRF EYCM(71)YYNRF 0 1 1 nc|ENSG00000014164|Q8IXZ2-2|ZC3H3;ENSG00000014164|ENST00000262577|ZC3H3 nc|ENSG00000014164|Q8IXZ2-2|ZC3H3 nc|ENSG00000014164|Q8IXZ2-2|ZC3H3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.2691040039062 2 681.268098 1360.52164 1.8084 0.001232 -0.37839 -0.00025779 1.43 0.00097422 681.2680100405121 47.572 0.36453 42.338 42.104 42.468 -5.2339 29 20 2 0 0 0 0.013323 1 29537 29537 71.134 54.021 1 6892600 10399 485 7248 7388 11834 11834 32 69 -0.14419673728070848 EYCVPSVNSPY 11 Unmodified _EYCVPSVNSPY_ 0 0 0 REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2760620117188 2 629.276446 1256.53834 0.28876 0.00018171 0.27041 0.00017016 0.55916 0.00035187 629.2760907587717 67.515 0.34287 67.033 66.889 67.232 -0.48218 32 14 3 0 0 0 0.63851 1 36874 36874 9.3831 0 1 2143200 + 10400 27067 7249 7389 11835 11835 -0.07966849570425438 EYDALAGK 8 Unmodified _EYDALAGK_ 0 0 0 REV__nc|ENSG00000147394|O15231-2|ZNF185 REV__nc|ENSG00000147394|O15231-2|ZNF185 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7161254882812 2 433.71635 865.418148 -0.57889 -0.00025107 0.53013 0.00022993 -0.048762 -2.1149E-05 433.7165362483391 17.779 0.37298 17.793 17.554 17.927 0.013865 198 71 3 0 0 0 0.3408 2 8851 8751;8851 50.855 8.7605 1 4872200 + 10401 20886 7250 7390 11836;11837 11837 -0.01994469781902808 EYDDHEYIF 9 Unmodified _EYDDHEYIF_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7515258789062 2 615.751118 1229.48768 1.1002 0.00067745 -0.26785 -0.00016493 0.83236 0.00051253 615.7509032361419 54.577 0.2794 54.577 54.462 54.741 0 20 11 2 0 0 0 0.12841 1 30305 30305 30.225 19.401 1 1550800 10402 2960 7251 7391 11838 11838 -0.11788055623810578 EYDEHLTQLE 10 Unmodified _EYDEHLTQLE_ 0 0 0 ENSG00000122728|ENST00000242310|TAF1L;ENST00000468167.5_1_X:70644073-70748398:+|nuORF;nc|ENSG00000147133|P21675-13|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1 ENSG00000122728|ENST00000242310|TAF1L;nc|ENSG00000147133|P21675-15|TAF1 ENSG00000122728|ENST00000242310|TAF1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.8182983398438 2 638.788232 1275.56191 0.65435 0.00041799 -2.202 -0.0014066 -1.5477 -0.00098862 639.288497163344 66.981 0.32106 66.999 66.857 67.178 0.018036 33 15 3 0 0 0 0.23412 1 36692 36692 9.3831 7.7305 1 2104700 10403 3657;16257 7252 7392 11839 11839 -0.06484712532278536 EYDFTRQAF 9 Unmodified _EYDFTRQAF_ 0 0 0 REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5 REV__nc|ENSG00000240764|Q9Y5F6-2|PCDHGC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8485107421875 3 392.848856 1175.52474 -1.0812 -0.00042474 0.57433 0.00022562 -0.50686 -0.00019912 392.84907000073827 32.74 0.27044 32.74 32.618 32.889 0 43 13 4 0 0 0 0.58466 1 17202 17202 1.1933 0 1 33196000 + 10404 24445 7253 7393 11840 11840 -0.056003392873890334 EYDGVVVVV 9 Unmodified _EYDGVVVVV_ 0 0 0 ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.51611328125 1 978.514239 977.506963 0.31498 0.00030821 0.12079 0.00011819 0.43577 0.00042641 978.5145504158119 66.828 0.29171 66.828 66.701 66.992 0 18 13 2 0 0 0 0.2143 1 37241 37241 21.747 14.457 1 1096100 10405 10125 7254 7394 11841 11841 0.017309454577684846 EYDINNKLF 9 Unmodified _EYDINNKLF_ 0 0 0 REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3 REV__nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.289306640625 2 578.287671 1154.56079 1.6038 0.00092748 -0.7003 -0.00040497 0.90355 0.00052251 578.2872756011038 50.039 0.26089 49.99 49.846 50.107 -0.048824 30 12 3 0 0 0 0.2324 1 27031 27031 28.487 3.0875 1 3758200 + 10406 18768 7255 7395 11842 11842 -0.010308821105354582 EYDLEMMTY 9 Unmodified _EYDLEMMTY_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3062744140625 2 597.738308 1193.46206 -0.57309 -0.00034256 1.1499 0.00068736 0.57684 0.0003448 597.7390564948922 41.295 0.36112 41.295 41.119 41.48 0 55 17 4 0 0 0 0.20727 1 22231 22231 7.9102 0 1 42140000 + 10407 17565 7256 7396 11843 11843 -0.12692989462061632 EYDLFRLYIK 10 Unmodified _EYDLFRLYIK_ 0 0 0 REV__nc|ENSG00000166342|Q8TDF5-2|NETO1 REV__nc|ENSG00000166342|Q8TDF5-2|NETO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.9169921875 3 453.915089 1358.72344 NaN NaN NaN NaN NaN NaN NaN 27.81 1 27.839 27.339 28.339 0.029564 0 0 0 0.99008 1 14462 14462 1.7423 0.41263 1 + 10408 22107 7257 7397 11844 11844 0.05842501291499502 EYDLIVHQL 9 Unmodified _EYDLIVHQL_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2980346679688 2 565.298039 1128.58152 0.20116 0.00011372 -0.64715 -0.00036583 -0.44599 -0.00025212 565.2975869415974 61.873 0.45789 61.873 61.641 62.099 0 78 19 5 0 0 0 0.0026776 2 34415 34415;34512 128.37 80.02 1 231700000 10409 3670 7258 7398 11845;11846 11845 0.022377082691491523 EYDLIVHQL 9 Unmodified _EYDLIVHQL_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.29833984375 2 565.298039 1128.58152 0.8879 0.00050193 -0.1597 -9.0276E-05 0.72821 0.00041165 565.2979219477214 62.331 0.40104 61.844 61.66 62.061 -0.48764 70 18 5 0 0 0 0.0082661 2 34009 33900;34009 92.491 44.146 1 83269000 10410 3670 7258 7398 11847;11848 11848 0.022377082691491523 EYDLIVHQL 9 Unmodified _EYDLIVHQL_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3003540039062 2 565.298039 1128.58152 0.81515 0.0004608 0.069636 3.9365E-05 0.88479 0.00050017 565.2981146008913 68.142 0.90026 61.966 61.618 62.518 -6.1757 169 53 4 0 0 0 0.0014543 3 44249 44249;44393;44521 136.33 72.097 1 433600000 10411 3670 7258 7398 11849;11850;11851 11849 0.022377082691491523 EYDMHEEFF 9 Unmodified _EYDMHEEFF_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8005981445312 2 623.739696 1245.46484 0.5552 0.0003463 1.4815 0.00092405 2.0367 0.0012704 623.7409945318096 57.631 0.3345 57.631 57.51 57.845 0 27 16 2 0 0 0 0.58865 1 32169 32169 2.0598 0.21551 1 4435500 + 10412 21218 7259 7399 11852 11852 -0.14807398012931117 EYDNAIITM 9 Oxidation (M) _EYDNAIITM(Oxidation (M))_ EYDNAIITM(1) EYDNAIITM(61) 0 0 1 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.24462890625 2 543.244615 1084.47468 -0.34423 -0.000187 1.4108 0.00076642 1.0666 0.00057942 543.245324541373 41.457 0.45177 41.457 41.174 41.626 0 42 22 3 0 0 0 0.022193 1 22286 22286 61.357 35.958 1 16418000 10413 5318;130 7260 7400 11853 11853 6 -0.06418210007564085 EYDNAIITM 9 Unmodified _EYDNAIITM_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MSMS AL20221201_MKP_PDAC_01 4 535.2483520507812 2 535.247157 1068.47976 NaN NaN NaN NaN NaN NaN NaN 69.225 1 63.049 62.549 63.549 -6.1757 0 0 0 0.26667 1 45206 45206 26.884 7.4447 1 10414 5318;130 7260 7401 11854 11854 -0.05173906144932516 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.77001953125 2 606.769645 1211.52474 -0.0077227 -4.6859E-06 -0.38246 -0.00023206 -0.39018 -0.00023675 606.769011805358 69.36 0.66472 69.36 69.152 69.816 0 62 30 4 0 0 0 0.13231 2 38590 38590;38690 39.957 33.234 1 9600900 10415 1119 7261 7402 11855;11856 11855 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.77001953125 2 606.769645 1211.52474 -0.087251 -5.2941E-05 -0.51657 -0.00031344 -0.60382 -0.00036638 606.7694094749585 69.834 0.73306 69.355 69.086 69.819 -0.47903 82 36 4 0 0 0 0.040683 2 38190 38092;38190 64.236 48.087 1 18256000 10416 1119 7261 7402 11857;11858 11858 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.7701416015625 2 606.769645 1211.52474 NaN NaN NaN NaN NaN NaN NaN 69.309 1 69.34 68.84 69.84 0.030914 0 0 0 0.15231 1 38093 38093 48.346 31.404 1 10417 1119 7261 7402 11859 11859 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.76953125 2 606.769645 1211.52474 0.080145 4.863E-05 -0.82043 -0.00049781 -0.74028 -0.00044918 606.7692126254634 76.609 0.57756 70.433 70.182 70.759 -6.1757 47 30 2 0 0 0 0.010301 3 50180 50049;50180;50306 100.37 73.488 1 21249000 10418 1119 7261 7402 11860;11861;11862 11861 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7681274414062 2 606.769645 1211.52474 -0.0040204 -2.4395E-06 0.030345 1.8413E-05 0.026325 1.5973E-05 606.7694477346699 77.222 0.79482 71.047 70.581 71.376 -6.1757 75 44 2 0 0 0 0.01958 2 50588 50418;50588 81.613 65.766 1 18183000 10419 1119 7261 7402 11863;11864 11864 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MSMS AL20221201_MKP_PDAC_01 4 606.7704467773438 2 606.769645 1211.52474 NaN NaN NaN NaN NaN NaN NaN 76.307 1 70.131 69.631 70.631 -6.1757 0 0 0 0.049786 1 49914 49914 74.423 55.166 1 10420 1119 7261 7402 11865 11865 -0.07256339287368974 EYDNFFQHL 9 Unmodified _EYDNFFQHL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.769645 1211.52474 0.51958 0.00031526 -0.34254 -0.00020784 0.17704 0.00010742 606.769172667108 69.274 0.14712 69.305 69.166 69.314 0.030914 -0.035371 9.1125E-05 NaN 64.236 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3282200 10421 1119 7261 7402 -0.07256339287368974 EYDNFFQHLRL 11 Unmodified _EYDNFFQHLRL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.5752868652344 3 494.577247 1480.70991 0.2849 0.00014091 -3.7557 -0.0018575 -3.4708 -0.0017166 494.5754979826377 18.72 0.10847 18.726 18.658 18.767 0.0060463 9 4 3 0 0 0 0.69509 1 9499 9499 4.7159 0.30977 1 1315600 10422 1119 7262 7403 11866 11866 -0.011213564877607496 EYDNFFQHLRL 11 Unmodified _EYDNFFQHLRL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 494.577247 1480.70991 -0.39631 -0.00019601 -2.7674 -0.0013687 -3.1637 -0.0015647 494.5762326763647 18.604 0.1157 18.627 18.574 18.69 0.023106 -0.075495 -7.6026E-05 NaN 4.7159 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 406070 10423 1119 7262 7403 -0.011213564877607496 EYDPVIILI 9 Unmodified _EYDPVIILI_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.8079223632812 2 537.807708 1073.60086 0.26202 0.00014092 0.7635 0.00041061 1.0255 0.00055153 537.8079889528675 100.24 0.13275 100.24 100.17 100.3 0 9 4 3 0 0 0 0.023164 1 55333 55333 60.39 38.643 1 1592600 10424 8321 7263 7404 11867 11867 0.06700664560048608 EYDPVIILI 9 Unmodified _EYDPVIILI_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.807708 1073.60086 0.21874 0.00011764 -0.10413 -5.6E-05 0.11461 6.1638E-05 537.8074856471801 100.34 0.086296 100.18 100.11 100.19 -0.1575 -0.029786 -0.00080065 NaN 60.39 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 677410 10425 8321 7263 7404 0.06700664560048608 EYDQCFNRW 9 Carbamidomethyl (C) _EYDQC(Carbamidomethyl (C))FNRW_ EYDQC(1)FNRW EYDQC(85)FNRW 0 1 0 ENSG00000170855|ENST00000546954|TRIAP1;ENST00000302432.3_1_12:120883914-120884145:-|nuORF ENSG00000170855|ENST00000546954|TRIAP1 ENSG00000170855|ENST00000546954|TRIAP1 MSMS AL20221201_MKP_PDAC_01 4 659.2705078125 2 659.269487 1316.52442 NaN NaN NaN NaN NaN NaN NaN 51.917 1 46.182 45.682 46.682 -5.7345 0 0 0 0.014983 1 32718 32718 85.272 48.766 1 10426 8033 7264 7405 11868 11868 782 -0.12118082278880138 EYDTDRNSY 9 Unmodified _EYDTDRNSY_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MSMS AL20221201_MKP_PDAC_01 4 581.7362670898438 2 581.736 1161.45745 NaN NaN NaN NaN NaN NaN NaN 88.799 1 82.624 82.124 83.124 -6.1757 0 0 0 0.7453 1 58597 58597 7.9102 2.1497 1 10427 2500 7265 7406 11869 11869 -0.11682414288975451 EYEAWNIQV 9 Unmodified _EYEAWNIQV_ 0 0 0 ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENST00000446618.1_1_22:19245879-19246326:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.5162048339844 3 384.517106 1150.52949 NaN NaN NaN NaN NaN NaN NaN 8.0363 1 5.5544 5.0544 6.0544 -2.482 0 0 0 0.85798 1 4056 4056 0.23584 0.028987 1 10428 13466 7266 7407 11870 11870 -0.039754551446321784 EYEHYEVCTF 10 Unmodified _EYEHYEVCTF_ 0 0 0 ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.5138244628906 3 440.513144 1318.5176 0.64551 0.00028436 2.0883 0.00091994 2.7338 0.0012043 440.51412742449327 45.039 0.2868 40.187 40.007 40.294 -4.852 39 18 3 0 0 0 0.69377 1 27512 27512 1.7423 0.41263 1 15528000 10429 13833 7267 7408 11871 11871 -0.12891439950135464 EYEHYEVCTF 10 Unmodified _EYEHYEVCTF_ 0 0 0 ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 440.513144 1318.5176 0.48006 0.00021147 2.1346 0.00094033 2.6147 0.0011518 440.5138572781642 40.798 0.14619 40.495 40.397 40.543 -0.30304 0.086244 0.00011208 NaN 1.7423 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1672400 10430 13833 7267 7408 -0.12891439950135464 EYEHYEVCTF 10 Unmodified _EYEHYEVCTF_ 0 0 0 ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENST00000469387.1_1_1:100889822-100908582:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 440.513144 1318.5176 0.70385 0.00031006 1.8832 0.00082958 2.5871 0.0011396 440.51432812889834 40.54 0.18951 40.545 40.382 40.571 0.0050583 0.13607 -0.00022018 NaN 1.7423 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1635100 10431 13833 7267 7408 -0.12891439950135464 EYEIQNNY 8 Unmodified _EYEIQNNY_ 0 0 0 REV__ENSG00000168769|ENST00000380013|TET2 REV__ENSG00000168769|ENST00000380013|TET2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7526245117188 2 536.732729 1071.4509 0.50858 0.00027297 -1.0977 -0.00058917 -0.58911 -0.0003162 536.7324871768665 53.147 0.26144 53.147 53.02 53.281 0 17 11 2 0 0 0 8.7369 1 29373 29373 14.582 5.2343 1 3799500 + 10432 22341 7268 7409 11872 11872 -0.08196307449702545 EYEKTEVNSGF 11 Unmodified _EYEKTEVNSGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000482776.1_1_7:56124009-56126486:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.7935791015625 2 651.796057 1301.57756 NaN NaN NaN NaN NaN NaN NaN 48.808 1 48.436 47.936 48.936 -0.37172 0 0 0 0.86932 1 26206 26206 8.7454 1.4562 1 10433 5791 7269 7410 11873 11873 -0.06116426015250909 EYELYMATL 9 Unmodified _EYELYMATL_ 0 0 0 ENSG00000112539|ENST00000230301|C6orf118 ENSG00000112539|ENST00000230301|C6orf118 ENSG00000112539|ENST00000230301|C6orf118 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7634887695312 2 566.765183 1131.51581 0.63136 0.00035783 -1.3487 -0.00076439 -0.71733 -0.00040656 566.7633595646838 88.192 0.42967 87.688 87.46 87.89 -0.50423 48 18 4 0 0 0 0.49272 1 48296 48296 7.9102 2.1497 1 2643200 10434 2898 7270 7411 11874 11874 -0.04468448968054872 EYENLGSSSL 10 Unmodified _EYENLGSSSL_ 0 0 0 REV__ENSG00000173214|ENST00000671876|MFSD4B REV__ENSG00000173214|ENST00000671876|MFSD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7492065429688 2 549.751118 1097.48768 0.30861 0.00016966 1.4416 0.00079252 1.7502 0.00096217 549.7515810427406 64.428 0.24862 64.428 64.324 64.573 0 19 11 2 0 0 0 0.52888 1 35927 35927 14.838 0.25658 1 3614400 + 10435 22711 7271 7412 11875 11875 -0.057160556237931814 EYENLGSSSL 10 Unmodified _EYENLGSSSL_ 0 0 0 REV__ENSG00000173214|ENST00000671876|MFSD4B REV__ENSG00000173214|ENST00000671876|MFSD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.749267578125 2 549.751118 1097.48768 0.35849 0.00019708 -1.6164 -0.00088862 -1.2579 -0.00069154 549.7504339880683 65.091 0.51717 64.607 64.274 64.791 -0.48428 36 23 2 0 0 0 0.52888 1 35396 35396 14.838 0.25658 1 1539700 + 10436 22711 7271 7412 11876 11876 -0.057160556237931814 EYENLGSSSL 10 Unmodified _EYENLGSSSL_ 0 0 0 REV__ENSG00000173214|ENST00000671876|MFSD4B REV__ENSG00000173214|ENST00000671876|MFSD4B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.751118 1097.48768 0.30861 0.00016966 1.4416 0.00079252 1.7502 0.00096217 549.7515810427406 64.428 0.24862 64.428 64.324 64.573 0 -0.089255 0.0026954 NaN 14.838 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3614400 + 10437 22711 7271 7412 -0.057160556237931814 EYENYERSY 9 Unmodified _EYENYERSY_ 0 0 0 REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3 REV__nc|ENSG00000161405|Q9UKT9-14|IKZF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.7578125 2 626.759475 1251.5044 0.19302 0.00012098 -0.14565 -9.129E-05 0.047368 2.9688E-05 626.7591784824266 39.915 0.21776 39.915 39.775 39.993 0 22 10 3 0 0 0 0.5029 1 21400 21400 7.2892 7.2892 1 2570800 + 10438 21596 7272 7413 11877 11877 -0.11129554737840408 EYENYKGF 8 Unmodified _EYENYKGF_ 0 0 0 REV__ENSG00000227124|ENST00000652011|ZNF717 REV__ENSG00000227124|ENST00000652011|ZNF717 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2322387695312 2 525.232364 1048.45018 0.804 0.00042229 -0.029318 -1.5399E-05 0.77468 0.00040689 525.2322151126288 47.907 0.26921 47.907 47.745 48.014 0 18 12 2 0 0 0 0.67481 1 26248 26248 19.439 4.8573 1 2102300 + 10439 24396 7273 7414 11878 11878 -0.07211102098744959 EYEPLFYL 8 Unmodified _EYEPLFYL_ 0 0 0 REV__nc|ENSG00000162894|O60667-2|FCMR REV__nc|ENSG00000162894|O60667-2|FCMR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2640380859375 2 537.263133 1072.51171 0.53647 0.00028822 -0.64246 -0.00034517 -0.106 -5.6948E-05 537.2626744165282 36.888 0.50723 36.888 36.61 37.117 0 45 24 2 0 0 0 0.77907 1 19560 19560 10.183 0.10947 1 4882000 + 10440 29739 7274 7415 11879 11879 -0.021641703994646377 EYEPNYSI 8 Unmodified _EYEPNYSI_ 0 0 0 nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3;nc|ENSG00000157800|Q8NCC5-3|SLC37A3 nc|ENSG00000157800|Q8NCC5-2|SLC37A3 nc|ENSG00000157800|Q8NCC5-2|SLC37A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584533691406 2 507.724372 1013.43419 0.48325 0.00024536 0.8438 0.00042842 1.3271 0.00067378 507.7247471968506 50.214 0.33733 50.214 50.032 50.369 0 32 15 3 0 0 0 8.7369 1 27696 27696 13.508 0.97634 1 5148100 10441 6541 7275 7416 11880 11880 -0.07198808335658669 EYEYDQYDEE 10 Unmodified _EYEYDQYDEE_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000007350 REV__CON__ENSEMBL:ENSBTAP00000007350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.250244140625 2 691.74897 1381.48339 -0.55955 -0.00038707 -0.18827 -0.00013023 -0.74782 -0.0005173 691.7487879955278 55.977 0.22265 55.977 55.916 56.138 0 18 10 2 0 0 0 0.71276 1 31155 31155 1.4819 0.15237 1 2397100 + + 10442 16825 7276 7417 11881 11881 -0.19209609628023827 EYFESPFTI 9 Unmodified _EYFESPFTI_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7640991210938 2 566.763497 1131.51244 0.63136 0.00035783 1.6251 0.00092102 2.2564 0.0012789 566.7633595646838 88.192 0.42967 87.688 87.46 87.89 -0.50423 48 18 4 0 0 0 0.10247 1 48201 48201 44.407 21.259 1 2643200 10443 10205 7277 7418 11882 11882 -0.048053757504249006 EYFESPFTI 9 Unmodified _EYFESPFTI_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7644653320312 2 566.763497 1131.51244 1.5637 0.00088626 -0.045506 -2.5791E-05 1.5182 0.00086047 566.763355412 97.378 0.68242 91.203 90.827 91.509 -6.1757 61 38 2 0 0 0 0.040683 2 64516 64516;64634 64.236 35.749 1 20194000 10444 10205 7277 7418 11883;11884 11883 -0.048053757504249006 EYFFRHGF 8 Unmodified _EYFFRHGF_ 0 0 0 ENST00000250916.5_1_19:1853189-1853714:-|nuORF ENST00000250916.5_1_19:1853189-1853714:-|nuORF ENST00000250916.5_1_19:1853189-1853714:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7611694335938 2 551.758884 1101.50321 1.019 0.00056224 -0.45434 -0.00025069 0.56466 0.00031156 551.7598895884651 80.232 0.99846 79.743 79.296 80.295 -0.48932 112 40 5 0 0 0 0.80044 1 44001 44001 6.3541 0.59368 1 4633400 10445 11141 7278 7419 11885 11885 -0.04347679525426429 EYFGKELTLV 10 Unmodified _EYFGKELTLV_ 0 0 0 REV__ENSG00000120457|ENST00000529694|KCNJ5 REV__ENSG00000120457|ENST00000529694|KCNJ5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2168884277344 3 400.216657 1197.62814 -0.34677 -0.00013878 1.0717 0.00042892 0.72495 0.00029014 400.21704257628966 51.465 0.27169 51.411 51.286 51.558 -0.053871 37 13 3 0 0 0 0.61603 1 27826 27826 10.315 0.55098 1 20905000 + 10446 19245 7279 7420 11886 11886 0.037231481004027955 EYFHCHYLL 9 Unmodified _EYFHCHYLL_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8549194335938 3 408.855065 1223.54336 NaN NaN NaN NaN NaN NaN NaN 15.07 1 15.07 14.57 15.57 0 0 0 0 0.85737 1 7227 7227 0.26902 0 1 + 10447 22919 7280 7421 11887 11887 -0.05946500917184494 EYFIHKRSF 9 Unmodified _EYFIHKRSF_ 0 0 0 REV__ENSG00000214711|ENST00000403897|CAPN14 REV__ENSG00000214711|ENST00000403897|CAPN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5470581054688 3 409.548741 1225.62439 0.68776 0.00028167 -2.1128 -0.00086528 -1.425 -0.00058361 409.5477251796499 17.865 0.1676 15.279 15.208 15.376 -2.5866 22 14 2 0 0 0 0.46162 1 9369 9369 9.544 4.1413 1 1895600 + 10448 24321 7281 7422 11888 11888 0.0206052311723397 EYFILRNIHTF 11 Unmodified _EYFILRNIHTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2598571777344 3 484.925988 1451.75613 0.46514 0.00022556 -0.61824 -0.0002998 -0.1531 -7.4241E-05 484.92554142297 70.016 0.28577 70.047 69.883 70.168 0.030914 33 14 3 0 0 0 0.3535 1 38518 38518 23.964 18.441 1 7205300 10449 4951 7282 7423 11889 11889 0.04832708414323861 EYFILRNIHTF 11 Unmodified _EYFILRNIHTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.9271545410156 3 484.925988 1451.75613 0.169 8.1951E-05 1.0209 0.00049505 1.1899 0.000577 484.9262363515219 93.131 0.15486 86.955 86.84 86.995 -6.1757 12 9 2 0 0 0 0.3535 1 61585 61585 23.964 19.558 1 19409000 10450 4951 7282 7423 11890 11890 0.04832708414323861 EYFKHEYAL 9 Unmodified _EYFKHEYAL_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5289306640625 3 400.529235 1198.56587 0.12101 4.847E-05 1.9084 0.00076438 2.0295 0.00081285 400.529731428089 39.319 0.29407 39.319 39.154 39.448 0 37 13 4 0 0 0 0.2546 1 21028 21028 19.362 10.386 1 12294000 + 10451 18338 7283 7424 11891 11891 -0.025465782479159316 EYFKHEYAL 9 Unmodified _EYFKHEYAL_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5292358398438 3 400.529235 1198.56587 -0.012773 -5.116E-06 0.87248 0.00034945 0.85971 0.00034434 400.52956916042257 39.61 0.25939 39.313 39.112 39.371 -0.29716 21 11 2 0 0 0 0.2546 1 20848 20848 19.362 10.918 1 9576900 + 10452 18338 7283 7424 11892 11892 -0.025465782479159316 EYFKHEYAL 9 Unmodified _EYFKHEYAL_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5295104980469 3 400.529235 1198.56587 0.78492 0.00031438 0.35125 0.00014069 1.1362 0.00045507 400.5292809246041 43.575 0.45454 38.81 38.595 39.05 -4.7648 83 28 4 0 0 0 0.43515 1 26562 26562 10.8 4.1691 1 50270000 + 10453 18338 7283 7424 11893 11893 -0.025465782479159316 EYFKKRDMWEE 11 Unmodified _EYFKKRDMWEE_ 0 0 0 REV__ENSG00000234828|ENST00000636793|IQCM REV__ENSG00000234828|ENST00000636793|IQCM MULTI-MSMS AL20221201_MKP_PDAC_01 4 781.3624877929688 2 780.861209 1559.70786 1.0393 0.00081157 -2.138 -0.0016695 -1.0986 -0.00085789 780.8590455865159 99.204 0.12619 93.028 92.94 93.066 -6.1757 11 6 2 0 0 0 0.63851 1 66008 66008 9.3831 3.6513 1 26437000 + 10454 24418 7284 7425 11894 11894 -0.04960153287856883 EYFKSFNF 8 Unmodified _EYFKSFNF_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.253173828125 2 541.2531 1080.49165 0.20628 0.00011165 0.19923 0.00010784 0.40551 0.00021949 541.2531038914749 63.668 0.25658 63.182 63.061 63.318 -0.48617 37 11 4 0 0 0 0.26159 1 34714 34714 60.39 42.255 1 14115000 10455 6117 7285 7426 11895 11895 -0.045379213394198814 EYFKSFNF 8 Unmodified _EYFKSFNF_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2529907226562 2 541.2531 1080.49165 0.42987 0.00023267 -0.22804 -0.00012343 0.20184 0.00010924 541.2528690908662 63.29 0.26973 63.269 63.109 63.379 -0.021614 36 13 3 0 0 0 0.18875 1 34603 34603 74.423 44.198 1 12411000 10456 6117 7285 7426 11896 11896 -0.045379213394198814 EYFLHELL 8 Unmodified _EYFLHELL_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.275634765625 2 532.276575 1062.5386 NaN NaN NaN NaN NaN NaN NaN 59.775 1 59.775 59.275 60.275 0 0 0 0 0.77249 1 33321 33321 24.674 4.2594 1 + 10457 21218 7286 7427 11897 11897 0.009829382117231944 EYFNQLKDN 9 Unmodified _EYFNQLKDN_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496255-118496735:-|nuORF nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.77685546875 2 585.774928 1169.5353 0.89572 0.00052469 -0.068158 -3.9925E-05 0.82757 0.00048477 585.7748479527422 83.707 1.1505 77.531 77.005 78.155 -6.1757 151 61 3 0 0 0 0.21643 1 55394 55394 21.537 1.1224 1 45951000 10458 3651 7287 7428 11898 11898 -0.042683566329287714 EYFPGTGD 8 Unmodified _EYFPGTGD_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.1866149902344 2 443.184883 884.355213 NaN NaN NaN NaN NaN NaN NaN 44.703 1 44.387 43.887 44.887 -0.31585 0 0 0 0.95973 1 23857 23857 8.5933 3.3626 1 10459 9847;3221 7288 7429 11899 11899 -0.09159035569939533 EYFQQLEY 8 Unmodified _EYFQQLEY_ 0 0 0 REV__ENSG00000280165|ENST00000409204|PCDH20 REV__ENSG00000280165|ENST00000409204|PCDH20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2532348632812 2 560.253297 1118.49204 0.74385 0.00041675 -0.68051 -0.00038126 0.063338 3.5485E-05 560.2533181765455 66.812 0.57601 60.637 60.368 60.944 -6.1757 106 32 4 0 0 0 0.6895 1 43403 43403 18.135 4.2289 1 556770000 + 10460 24681 7289 7430 11900 11900 -0.06246546410238807 EYFRVINIV 9 Unmodified _EYFRVINIV_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8245239257812 2 576.824224 1151.63389 NaN NaN NaN NaN NaN NaN NaN 72.163 1 72.202 71.702 72.702 0.039024 0 0 0 0.50124 1 39735 39735 15.847 1.0089 1 + 10461 17004 7290 7431 11901 11901 0.06414291402734307 EYFRVPDSATF 11 Unmodified _EYFRVPDSATF_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.316650390625 2 666.31696 1330.61937 0.61581 0.00041032 -0.56053 -0.00037349 0.055278 3.6833E-05 666.3165637600439 62.642 0.16603 62.155 62.04 62.206 -0.48764 13 7 2 0 0 0 0.014324 1 34135 34135 63.227 47.078 1 1790000 10462 16193 7291 7432 11902 11902 -0.03271825536057804 EYFSILGP 8 Unmodified _EYFSILGP_ 0 0 0 ENST00000549413.1_1_12:56355068-56359795:-|nuORF ENST00000549413.1_1_12:56355068-56359795:-|nuORF ENST00000549413.1_1_12:56355068-56359795:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2370300292969 2 463.236919 924.459284 0.49432 0.00022899 -1.6054 -0.00074369 -1.1111 -0.0005147 463.23581985492353 100.65 0.15811 94.474 94.345 94.503 -6.1757 15 10 2 0 0 0 0.50586 1 67331 67331 34.187 2.0704 1 37090000 10463 15150 7292 7433 11903 11903 -0.005967087424096462 EYFSYPVSL 9 Unmodified _EYFSYPVSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7674560546875 2 552.76604 1103.51753 0.43886 0.00024258 0.5158 0.00028511 0.95465 0.0005277 552.766303999556 79.276 0.39891 79.276 79.076 79.475 0 34 16 3 0 0 0 0.038285 2 44075 43976;44075 50.855 33.913 1 3532400 10464 2778 7293 7434 11904;11905 11905 -0.03009071887800019 EYFSYPVSL 9 Unmodified _EYFSYPVSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7664794921875 2 552.76604 1103.51753 1.1251 0.00062192 -0.55657 -0.00030765 0.56853 0.00031426 552.7656305109276 79.833 0.4849 79.344 79.075 79.56 -0.48932 69 20 4 0 0 0 0.010877 2 43729 43627;43729 77.984 58.727 1 15965000 10465 2778 7293 7434 11906;11907 11907 -0.03009071887800019 EYFSYPVSL 9 Unmodified _EYFSYPVSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7655639648438 2 552.76604 1103.51753 0.36873 0.00020382 -0.5398 -0.00029838 -0.17107 -9.456E-05 552.7657619483158 79.259 0.2868 79.314 79.158 79.445 0.054977 16 10 2 0 0 0 0.30562 1 43822 43822 16.942 2.3606 1 2809900 10466 2778 7293 7434 11908 11908 -0.03009071887800019 EYFSYPVSL 9 Unmodified _EYFSYPVSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7664794921875 2 552.76604 1103.51753 1.0509 0.00058089 -0.10019 -5.5379E-05 0.9507 0.00052551 552.7660263338386 87.174 0.61325 80.998 80.731 81.344 -6.1757 105 33 4 0 0 0 0.010877 3 57377 57377;57511;57642 77.984 58.727 1 141700000 10467 2778 7293 7434 11909;11910;11911 11909 -0.03009071887800019 EYFVKIQSF 9 Unmodified _EYFVKIQSF_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8045043945312 2 580.802957 1159.59136 0.6669 0.00038733 1.4863 0.00086325 2.1532 0.0012506 580.8034179347418 64.246 0.33624 63.761 63.572 63.908 -0.48512 35 15 3 0 0 0 0.0082353 1 35015 35015 96.111 47.765 1 5481700 10468 2068 7294 7435 11912 11912 0.017948962745094832 EYFVKIQSF 9 Unmodified _EYFVKIQSF_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 580.802957 1159.59136 1.3142 0.00076328 0.14792 8.591E-05 1.4621 0.00084919 580.8034464261525 63.775 0.19581 63.764 63.649 63.845 -0.010532 0.0014816 -0.0013181 NaN 96.111 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2198800 10469 2068 7294 7435 0.017948962745094832 EYFWRIAWRFW 11 Unmodified _EYFWRIAWRFW_ 0 0 0 ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 830.4140625 2 830.414603 1658.81465 NaN NaN NaN NaN NaN NaN NaN 81.045 1 81.105 80.605 81.605 0.059929 0 0 0 0.9435 1 44813 44813 0 0 1 10470 13093 7295 7436 11913 11913 0.011598097794148998 EYFYLAREF 9 Unmodified _EYFYLAREF_ 0 0 0 REV__nc|ENSG00000141030|Q9UNS2-2|COPS3 REV__nc|ENSG00000141030|Q9UNS2-2|COPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.297607421875 2 619.298039 1236.58152 0.95548 0.00059173 -3.2237 -0.0019964 -2.2682 -0.0014047 619.2957674272152 37.149 0.38839 32.865 32.585 32.974 -4.2835 39 23 2 0 0 0 0.098164 2 21782 21632;21782 36.127 11.136 1 10942000 + 10471 20514 7296 7437 11914;11915 11915 -0.027302917308816177 EYGDTVYTI 9 Unmodified _EYGDTVYTI_ 0 0 0 ENST00000488876.5_1_17:37814522-37819158:+|nuORF;nc|ENSG00000131748|Q14849-2|STARD3;nc|ENSG00000131748|Q14849-3|STARD3;ENSG00000131748|ENST00000336308|STARD3 ENST00000488876.5_1_17:37814522-37819158:+|nuORF ENST00000488876.5_1_17:37814522-37819158:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 354.1670227050781 3 354.165962 1059.47606 NaN NaN NaN NaN NaN NaN NaN 27.079 1 24.043 23.543 24.543 -3.0365 0 0 0 0.36957 1 14979 14979 21.537 3.3906 1 10472 4348 7297 7438 11916 11916 -0.05130252647154521 EYGENFPML 9 Oxidation (M) _EYGENFPM(Oxidation (M))L_ EYGENFPM(1)L EYGENFPM(51)L 0 0 1 ENSG00000197961|ENST00000320451|ZNF121 ENSG00000197961|ENST00000320451|ZNF121 ENSG00000197961|ENST00000320451|ZNF121 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2408447265625 2 558.239332 1114.46411 0.35772 0.00019969 0.79302 0.00044269 1.1507 0.00064239 558.239470757807 64.607 0.46927 64.607 64.45 64.919 0 66 22 4 0 0 0 0.038285 1 35993 35993 50.855 25.456 1 8901700 10473 10030 7298 7439 11917 11917 1630 -0.08854192661965499 EYGFISQTL 9 Unmodified _EYGFISQTL_ 0 0 0 ENSG00000057704|ENST00000261226|TMCC3 ENSG00000057704|ENST00000261226|TMCC3 ENSG00000057704|ENST00000261226|TMCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.265380859375 2 529.263665 1056.51278 0.48501 0.0002567 0.16877 8.9323E-05 0.65378 0.00034602 529.2637385357299 69.18 0.28028 69.18 69.046 69.326 0 31 12 3 0 0 0 0.078314 1 38524 38524 50.855 31.416 1 3970700 10474 796 7299 7440 11918 11918 -0.013219560305742561 EYGFISQTL 9 Unmodified _EYGFISQTL_ 0 0 0 ENSG00000057704|ENST00000261226|TMCC3 ENSG00000057704|ENST00000261226|TMCC3 ENSG00000057704|ENST00000261226|TMCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.264892578125 2 529.263665 1056.51278 0.2711 0.00014348 0.4029 0.00021324 0.674 0.00035672 529.263865276702 77.176 0.37766 71.001 70.739 71.117 -6.1757 28 21 2 0 0 0 0.34134 1 50433 50433 21.747 5.5975 1 14814000 10475 796 7299 7440 11919 11919 -0.013219560305742561 EYGFYHDFF 9 Unmodified _EYGFYHDFF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7542114257812 2 612.753464 1223.49238 0.75055 0.0004599 -0.14938 -9.1535E-05 0.60117 0.00036837 612.7532464647413 75.654 0.30463 75.176 74.997 75.301 -0.47714 25 14 2 0 0 0 0.14602 2 41444 41344;41444 28.487 13.649 1 2573900 10476 5500 7300 7441 11920;11921 11921 -0.1104312669040155 EYGFYHDFF 9 Unmodified _EYGFYHDFF_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 612.3203125 2 612.753464 1223.49238 0.69467 0.00042566 0.37324 0.0002287 1.0679 0.00065437 612.7539089616502 91.243 0.50782 85.068 84.823 85.331 -6.1757 43 28 2 0 0 0 0.209 1 60427 60427 7.2892 4.294 1 9310600 10477 5500 7300 7441 11922 11922 -0.1104312669040155 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2928466796875 2 552.292225 1102.5699 0.82752 0.00045703 0.30002 0.0001657 1.1275 0.00062274 552.2923582903486 74.26 0.38191 73.784 73.593 73.974 -0.47588 55 15 4 0 0 0 0.053952 1 40591 40591 56.177 0 1 36103000 10478 5267 7301 7442 11923 11923 0.02271511245817237 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2922973632812 2 552.292225 1102.5699 0.34646 0.00019135 -0.37844 -0.00020901 -0.031983 -1.7664E-05 552.2920204009187 73.725 0.48291 73.769 73.545 74.028 0.043976 72 22 5 0 0 0 0.076472 2 40570 40570;40680 49.933 0 1 113750000 10479 5267 7301 7442 11924;11925 11924 0.02271511245817237 EYGKFFVTL 9 Unmodified _EYGKFFVTL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2936401367188 2 552.292225 1102.5699 1.1055 0.00061055 -0.32237 -0.00017804 0.78312 0.00043251 552.2921183706403 90.929 1.5014 84.753 83.968 85.469 -6.1757 238 87 5 0 0 0 0.012586 5 60402 59891;60017;60147;60280;60402 89.401 0 1 183510000 10480 5267 7301 7442 11926;11927;11928;11929;11930 11930 0.02271511245817237 EYGPIHILW 9 Unmodified _EYGPIHILW_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.298828125 2 564.297842 1126.58113 0.79538 0.00044883 0.19263 0.0001087 0.98801 0.00055753 564.2979619651254 82.329 0.3363 81.833 81.674 82.01 -0.4952 42 13 4 0 0 0 0.068777 2 45027 45027;45127 40.449 15.775 1 8380500 10481 6885 7302 7443 11931;11932 11931 0.022903333399654002 EYGPIHILW 9 Unmodified _EYGPIHILW_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3015747070312 2 564.297842 1126.58113 2.027 0.0011438 0.3399 0.00019181 2.3669 0.0013356 564.2982588646668 81.637 0.43272 81.697 81.452 81.885 0.059929 43 16 4 0 0 0 0.027803 2 45098 45098;45204 56.541 31.867 1 8339700 10482 6885 7302 7443 11933;11934 11933 0.022903333399654002 EYGPIHILW 9 Unmodified _EYGPIHILW_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2982788085938 2 564.297842 1126.58113 1.4531 0.00081998 -0.21745 -0.00012271 1.2356 0.00069727 564.2977062216953 97.792 0.35863 91.616 91.441 91.8 -6.1757 75 23 4 0 0 0 0.016494 1 64860 64860 67.035 42.361 1 262560000 10483 6885 7302 7443 11935 11935 0.022903333399654002 EYGPVYSTW 9 Unmodified _EYGPVYSTW_ 0 0 0 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2488403320312 2 551.248015 1100.48148 0.77322 0.00042623 1.3473 0.00074272 2.1206 0.001169 551.2490034911049 69.44 0.28904 63.264 63.071 63.36 -6.1757 20 14 2 0 0 0 0.14602 1 45383 45383 28.487 7.6156 1 19796000 10484 5898 7303 7444 11936 11936 -0.06474529064666967 EYGQVNHAL 9 Unmodified _EYGQVNHAL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.751220703125 2 515.751256 1029.48796 NaN NaN NaN NaN NaN NaN NaN 28.516 1 28.516 28.016 29.016 0 0 0 0 0.026323 1 14734 14734 70.716 40.491 1 10485 4231 7304 7445 11937 11937 -0.025605911132970505 EYGQVNHAL 9 Unmodified _EYGQVNHAL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7498779296875 2 515.751256 1029.48796 0.97027 0.00050042 -2.9123 -0.001502 -1.9421 -0.0010016 515.7495139688984 32.465 0.37048 28.608 28.383 28.753 -3.8562 54 20 3 0 0 0 0.023164 1 18514 18514 60.39 26.202 1 43526000 10486 4231 7304 7445 11938 11938 -0.025605911132970505 EYGRILTRL 9 Unmodified _EYGRILTRL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3298950195312 2 560.827298 1119.64004 0.15911 8.9236E-05 1.241 0.00069601 1.4001 0.00078524 560.8281822461931 44.003 0.11323 43.687 43.593 43.707 -0.31585 8 6 2 0 0 0 0.0089732 1 23445 23445 86.332 19.875 1 31511000 10487 4037 7305 7446 11939 11939 0.08500809634256257 EYGRILTRL 9 Unmodified _EYGRILTRL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.55517578125 3 374.220624 1119.64004 0.27892 0.00010438 -0.24593 -9.203E-05 0.032991 1.2346E-05 374.22054799874684 43.671 0.23187 43.655 43.505 43.737 -0.015667 23 10 3 0 0 0 0.025842 1 23384 23384 46.022 18.934 1 26082000 10488 4037 7305 7446 11940 11940 0.08500809634256257 EYGRILTRL 9 Unmodified _EYGRILTRL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8270263671875 2 560.827298 1119.64004 0.72918 0.00040894 0.086948 4.8763E-05 0.81613 0.00045771 560.827176590437 43.643 0.20954 43.627 43.528 43.737 -0.015667 14 9 2 0 0 0 0.013609 1 23410 23410 70.332 18.702 1 13916000 10489 4037 7305 7446 11941 11941 0.08500809634256257 EYGRILTRL 9 Unmodified _EYGRILTRL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2217407226562 3 374.220624 1119.64004 1.3815 0.000517 0.48765 0.00018249 1.8692 0.00069948 374.22061988640576 68.489 0.81614 62.313 62.067 62.883 -6.1757 73 47 2 0 0 0 0.05483 1 44869 44869 34.222 22.727 1 14516000 10490 4037 7305 7446 11942 11942 0.08500809634256257 EYGSIIAFF 9 Unmodified _EYGSIIAFF_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7628173828125 2 523.7633 1045.51205 1.13 0.00059187 -1.0765 -0.00056382 0.05356 2.8053E-05 523.7630759444318 101.25 0.10673 95.075 95.018 95.125 -6.1757 15 6 3 0 0 0 0.078417 1 67907 67907 38.151 7.9264 1 71984000 10491 16175 7306 7447 11943 11943 -0.008887506796099842 EYGVHWNFF 9 Unmodified _EYGVHWNFF_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7711181640625 2 599.769448 1197.52434 0.81037 0.00048603 0.84336 0.00050582 1.6537 0.00099185 599.7703980712744 81.254 0.24627 80.762 80.686 80.932 -0.49247 24 14 3 0 0 0 0.18465 1 44499 44499 24.674 11.166 1 1757800 10492 10920 7307 7448 11944 11944 -0.06651714216604887 EYGVHWNFF 9 Unmodified _EYGVHWNFF_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7733764648438 2 599.769448 1197.52434 0.15526 9.3117E-05 0.77704 0.00046605 0.9323 0.00055916 600.2708186169882 80.542 0.34811 80.599 80.384 80.733 0.057587 33 14 3 0 0 0 0.0090851 1 44485 44485 85.357 34.502 1 17555000 10493 10920 7307 7448 11945 11945 -0.06651714216604887 EYGVHWNFF 9 Unmodified _EYGVHWNFF_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2720336914062 2 599.769448 1197.52434 0.53095 0.00031845 0.48454 0.00029061 1.0155 0.00060906 599.7695860852863 96.961 0.3069 90.786 90.622 90.929 -6.1757 55 17 4 0 0 0 0.0095811 2 64192 64192;64318 81.613 53.126 1 114470000 10494 10920 7307 7448 11946;11947 11946 -0.06651714216604887 EYGVIRDVL 9 Unmodified _EYGVIRDVL_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.293212890625 2 532.292756 1062.57096 0.39494 0.00021022 0.129 6.8664E-05 0.52394 0.00027889 532.2928146780521 58.427 0.44718 58.427 58.206 58.654 0 50 17 4 0 0 0 0.020676 2 32575 32472;32575 76.825 38.851 1 59125000 10495 706 7308 7449 11948;11949 11949 0.04217725614716983 EYGVIRDVL 9 Unmodified _EYGVIRDVL_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.291748046875 2 532.292756 1062.57096 0.22646 0.00012054 -0.24214 -0.00012889 -0.015679 -8.3456E-06 532.2924825325057 58.892 0.22321 58.401 58.271 58.494 -0.49079 19 10 2 0 0 0 0.037118 1 32005 32005 63.961 27.833 1 6118100 10496 706 7308 7449 11950 11950 0.04217725614716983 EYGVIRDVL 9 Unmodified _EYGVIRDVL_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MSMS AL20221201_MKP_PDAC_01 4 532.2930908203125 2 532.292756 1062.57096 NaN NaN NaN NaN NaN NaN NaN 65.11 1 58.934 58.434 59.434 -6.1757 0 0 0 0.18257 1 42239 42239 41.956 15.072 1 10497 706 7308 7449 11951 11951 0.04217725614716983 EYGYDCEFD 9 Unmodified _EYGYDCEFD_ 0 0 0 REV__ENSG00000156395|ENST00000369701|SORCS3 REV__ENSG00000156395|ENST00000369701|SORCS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7821655273438 2 570.694955 1139.37536 0.33331 0.00019022 0.61171 0.0003491 0.94502 0.00053932 570.6950991837695 64.048 0.36672 64.048 63.824 64.191 0 31 14 3 0 0 0 0.21473 1 35700 35700 4.3292 2.2695 1 1751400 + 10498 21329 7309 7450 11952 11952 -0.18875652692304357 EYGYIRTVL 9 Unmodified _EYGYIRTVL_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3012084960938 2 557.300581 1112.58661 0.54202 0.00030207 -0.091122 -5.0782E-05 0.4509 0.00025128 557.3007065098539 56.862 0.26988 56.862 56.728 56.998 0 24 11 3 0 0 0 0.07087 1 31645 31645 39.95 16.801 1 4278200 10499 791 7310 7451 11953 11953 0.03482012131757983 EYGYIRTVL 9 Unmodified _EYGYIRTVL_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3013305664062 2 557.300581 1112.58661 0.68636 0.00038251 -1.1099 -0.00061853 -0.42352 -0.00023603 557.3003310361581 57.379 0.37646 56.889 56.729 57.106 -0.48974 47 17 4 0 0 0 0.014417 1 31153 31153 69.105 38.468 1 10132000 10500 791 7310 7451 11954 11954 0.03482012131757983 EYGYIRTVL 9 Unmodified _EYGYIRTVL_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3023681640625 2 557.300581 1112.58661 0.9569 0.00053328 0.80396 0.00044805 1.7609 0.00098133 557.3014589559328 63.309 0.40574 57.134 57 57.405 -6.1757 47 23 3 0 0 0 0.012668 2 40918 40918;41089 72.968 38.566 1 31701000 10501 791 7310 7451 11955;11956 11955 0.03482012131757983 EYGYRSNTFF 10 Unmodified _EYGYRSNTFF_ 0 0 0 ENST00000492580.1_1_17:67008011-67013901:-|nuORF;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENSG00000154258|ENST00000340001|ABCA9 ENST00000492580.1_1_17:67008011-67013901:-|nuORF ENST00000492580.1_1_17:67008011-67013901:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.7905883789062 2 642.288202 1282.56185 0.18186 0.00011681 -0.82398 -0.00052923 -0.64212 -0.00041242 642.2901166088886 43.116 0.5097 43.116 42.928 43.438 0 49 25 3 0 0 0 0.25982 1 23342 23342 29.841 10.479 1 7892100 10502 6312 7311 7452 11957 11957 -0.0681266774163305 EYHCQQEL 8 Unmodified _EYHCQQEL_ 0 0 0 REV__nc|ENSG00000155966|P51816-2|AFF2 REV__nc|ENSG00000155966|P51816-2|AFF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2218017578125 2 525.221474 1048.42839 0.48313 0.00025375 0.34541 0.00018142 0.82855 0.00043517 525.2213173055411 63.337 0.44318 63.337 63.146 63.59 0 68 22 4 0 0 0 0.77907 2 35277 35277;35374 10.183 0.83596 1 16202000 + 10503 21301 7312 7453 11958;11959 11958 -0.09388230118975116 EYHERLQTF 9 Unmodified _EYHERLQTF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.1988220214844 3 408.199889 1221.57784 -0.19478 -7.9509E-05 -0.96229 -0.00039281 -1.1571 -0.00047231 408.1996874704204 31.092 0.22065 31.092 30.953 31.174 0 15 10 2 0 0 0 0.069655 1 16167 16167 40.239 15.358 1 3726700 10504 4087;13617 7313 7454 11960 11960 -0.02408961504738727 EYHFEYGF 8 Unmodified _EYHFEYGF_ 0 0 0 REV__ENSG00000137760|ENST00000428149|ALKBH8 REV__ENSG00000137760|ENST00000428149|ALKBH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2273559570312 2 546.227082 1090.43961 0.21447 0.00011715 0.26508 0.00014479 0.47955 0.00026194 546.2272837473847 62.584 0.36836 62.584 62.454 62.823 0 66 16 7 0 0 0 0.80143 1 34946 34946 5.7604 0 1 20194000 + 10505 20263 7314 7455 11961 11961 -0.10199084753185161 EYHFEYGF 8 Unmodified _EYHFEYGF_ 0 0 0 REV__ENSG00000137760|ENST00000428149|ALKBH8 REV__ENSG00000137760|ENST00000428149|ALKBH8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.227082 1090.43961 0.21447 0.00011715 0.26508 0.00014479 0.47955 0.00026194 546.2272837473847 62.584 0.36836 62.584 62.454 62.823 0 -0.023376 -0.0002011 NaN 5.7604 66 16 7 NaN NaN NaN NaN 0 NaN NaN 0 20194000 + 10506 20263 7314 7455 -0.10199084753185161 EYHFEYGF 8 Unmodified _EYHFEYGF_ 0 0 0 REV__ENSG00000137760|ENST00000428149|ALKBH8 REV__ENSG00000137760|ENST00000428149|ALKBH8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.227082 1090.43961 0.24125 0.00013178 2.2901 0.0012509 2.5313 0.0013827 546.2278192329926 63.117 0.082787 62.631 62.583 62.665 -0.48617 0.023376 0.0020111 NaN 5.7604 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 715050 + 10507 20263 7314 7455 -0.10199084753185161 EYHFHREHF 9 Unmodified _EYHFHREHF_ 0 0 0 REV__nc|ENSG00000102760|Q9H4X1-2|RGCC REV__nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2948608398438 2 651.294153 1300.57375 0.23003 0.00014982 0.13079 8.5181E-05 0.36082 0.000235 651.2946172182917 43.099 0.87322 43.099 42.816 43.689 0 208 43 7 0 0 0 0.2001 4 23255 23255;23372;23481;23590 23.148 8.3102 1 3042699999.9999995 + 10508 18252 7315 7456 11962;11963;11964;11965 11962 -0.0645100620777157 EYHFHREHF 9 Unmodified _EYHFHREHF_ 0 0 0 REV__nc|ENSG00000102760|Q9H4X1-2|RGCC REV__nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2951049804688 2 651.294153 1300.57375 0.026124 1.7014E-05 1.6803 0.0010944 1.7064 0.0011114 651.2952129950535 50.4 0.58851 50.4 50.075 50.664 0 40 27 2 0 0 0 0.55144 1 27918 27918 4.3292 0.73274 1 1792300 + 10509 18252 7315 7456 11966 11966 -0.0645100620777157 EYHFHREHF 9 Unmodified _EYHFHREHF_ 0 0 0 REV__nc|ENSG00000102760|Q9H4X1-2|RGCC REV__nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.7948608398438 2 651.294153 1300.57375 0.38088 0.00024807 -1.0546 -0.00068684 -0.6737 -0.00043878 651.7945453724744 46.343 0.27221 46.006 45.762 46.034 -0.33664 21 13 2 0 0 0 0.2001 1 24798 24798 23.148 8.3102 1 4986500 + 10510 18252 7315 7456 11967 11967 -0.0645100620777157 EYHFHREHF 9 Unmodified _EYHFHREHF_ 0 0 0 REV__nc|ENSG00000102760|Q9H4X1-2|RGCC REV__nc|ENSG00000102760|Q9H4X1-2|RGCC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.291259765625 2 651.294153 1300.57375 NaN NaN NaN NaN NaN NaN NaN 46.742 1 46.406 45.906 46.906 -0.33664 0 0 0 0.82739 1 25031 25031 4.3292 0.73274 1 + 10511 18252 7315 7456 11968 11968 -0.0645100620777157 EYHKWRTYF 9 Unmodified _EYHKWRTYF_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.I787Mfs*30|1|0.12|ENSG00000175727|chr12:122138528-122138528|C/-|frameshift_variant ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.8841857910156 3 443.884012 1328.63021 0.053416 2.371E-05 0.72808 0.00032318 0.78149 0.00034689 443.88419079058525 36.727 0.3853 36.748 36.599 36.984 0.021545 41 17 4 0 0 0 0.14859 1 19446 19446 28.234 19.789 1 9700500 10512 8538 7316 7457 11969 11969 -0.020963783711067663 EYHLSFSEPLC 11 Unmodified _EYHLSFSEPLC_ 0 0 0 REV__ENSG00000196482|ENST00000408911|ESRRG REV__ENSG00000196482|ENST00000408911|ESRRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2009582519531 3 442.200789 1323.58054 0.11418 5.0488E-05 3.0349 0.001342 3.1491 0.0013925 442.20224517425066 44.168 0.20987 44.168 44.036 44.246 0 15 10 2 0 0 0 0.68427 1 24004 24004 2.6312 0 1 7915800 + 10513 23833 7317 7458 11970 11970 -0.06830874162051259 EYHRIQHQL 9 Unmodified _EYHRIQHQL_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5477905273438 3 408.547511 1222.6207 0.79661 0.00032545 1.1234 0.00045894 1.92 0.0007844 408.547843151542 18.294 0.26221 15.672 15.54 15.802 -2.6215 41 20 3 0 0 0 0.32871 1 9596 9596 15.248 7.6395 1 5402400 10514 8655 7318 7459 11971 11971 0.018298533433835473 EYIAIINEI 9 Unmodified _EYIAIINEI_ 0 0 0 REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2 REV__nc|ENSG00000136108|Q8WWK9-4|CKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2953491210938 2 539.294965 1076.57538 0.3105 0.00016745 -1.7408 -0.00093879 -1.4303 -0.00077134 539.2933442852459 89.634 0.66483 89.132 88.937 89.601 -0.50172 58 32 3 0 0 0 0.14602 2 49067 48966;49067 28.487 5.3384 1 2348300 + 10515 20136 7319 7460 11972;11973 11973 0.04015190037625871 EYIAIQACKE 10 Unmodified _EYIAIQACKE_ 0 0 0 nc|ENSG00000138835|P49796-1|RGS3;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;ENST00000490241.1_1_9:116357838-116359230:+|nuORF;nc|ENSG00000138835|P49796-2|RGS3;nc|ENSG00000138835|P49796-7|RGS3;nc|ENSG00000138835|P49796-8|RGS3;nc|ENSG00000138835|P49796-9|RGS3 nc|ENSG00000138835|P49796-1|RGS3 nc|ENSG00000138835|P49796-1|RGS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2883911132812 2 584.289356 1166.56416 -0.25143 -0.00014691 -2.13 -0.0012445 -2.3814 -0.0013915 584.2876162970853 76.815 0.26302 76.335 76.216 76.479 -0.47945 26 11 3 0 0 0 0.29752 1 42027 42027 27.629 1.3607 1 1549100 10516 5116 7320 7461 11974 11974 -0.012459553281814806 EYIDDLFKL 9 Unmodified _EYIDDLFKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2998046875 2 578.300247 1154.58594 0.297 0.00017175 0.55993 0.00032381 0.85693 0.00049556 578.3003636182002 86.453 0.34398 86.453 86.269 86.613 0 42 15 4 0 0 0 0.11005 2 47834 47834;47929 41.84 21.386 1 2924500 10517 2669;16307 7321 7462 11975;11976 11975 0.014831726920419896 EYIDDLFKL 9 Unmodified _EYIDDLFKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3012084960938 2 578.300247 1154.58594 0.53819 0.00031124 1.0633 0.00061491 1.6015 0.00092615 578.3008616659927 86.943 0.44067 86.44 86.242 86.682 -0.50318 50 17 4 0 0 0 0.11005 2 47630 47533;47630 41.84 21.87 1 6687400 10518 2669;16307 7321 7462 11977;11978 11978 0.014831726920419896 EYIDDLFKL 9 Unmodified _EYIDDLFKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.30322265625 2 578.300247 1154.58594 0.71331 0.00041251 0.77892 0.00045045 1.4922 0.00086295 578.3006966155868 98.604 0.14142 92.428 92.352 92.493 -6.1757 24 10 3 0 0 0 0.044042 1 65405 65405 60.074 31.587 1 75250000 10519 2669;16307 7321 7462 11979 11979 0.014831726920419896 EYIDRLFSI 9 Unmodified _EYIDRLFSI_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8057250976562 2 578.305864 1154.59717 1.039 0.00060085 0.48935 0.000283 1.5283 0.00088384 578.3058609534312 79.791 0.5898 79.302 78.889 79.479 -0.48932 40 25 3 0 0 0 0.20728 1 43536 43536 8.7454 4.4162 1 2213300 10520 1504 7322 7463 11980 11980 0.02605994786199517 EYIFRVRAVNK 11 Unmodified _EYIFRVRAVNK_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.6006469726562 3 465.601616 1393.78302 0.50594 0.00023557 0.42817 0.00019935 0.93411 0.00043492 465.60212804253007 47.815 0.22894 47.777 47.64 47.869 -0.038643 29 10 4 0 0 0 0.48742 1 25752 25752 17.049 3.5299 1 6382900 10521 6400 7323 7464 11981 11981 0.10187817025507684 EYIHALTLL 9 Unmodified _EYIHALTLL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8052368164062 2 536.8055 1071.59645 0.45089 0.00024204 0.21293 0.0001143 0.66382 0.00035634 536.8054678554762 74.727 0.30717 74.727 74.582 74.89 0 32 13 3 0 0 0 0.052168 1 41557 41557 44.407 14.182 1 2834500 10522 4336 7324 7465 11982 11982 0.06351200137146407 EYIHALTLL 9 Unmodified _EYIHALTLL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.8052368164062 2 536.8055 1071.59645 0.64277 0.00034504 -1.2317 -0.00066117 -0.58892 -0.00031613 536.8049306268481 75.116 0.36765 74.639 74.453 74.821 -0.47713 51 16 4 0 0 0 0.013472 2 41059 41059;41168 70.716 28.273 1 36947000 10523 4336 7324 7465 11983;11984 11983 0.06351200137146407 EYIHALTLL 9 Unmodified _EYIHALTLL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8065795898438 2 536.8055 1071.59645 0.27771 0.00014907 -1.4657 -0.00078678 -1.188 -0.00063771 536.8054169539454 74.533 0.31461 74.579 74.458 74.773 0.045959 26 13 3 0 0 0 0.023164 1 41083 41083 60.39 15.983 1 3831800 10524 4336 7324 7465 11985 11985 0.06351200137146407 EYIHALTLL 9 Unmodified _EYIHALTLL_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;ENST00000466000.1_1_7:133694942-133749278:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8055419921875 2 536.8055 1071.59645 0.50739 0.00027237 0.11908 6.3924E-05 0.62647 0.00033629 536.8056059350218 92.682 0.72958 86.506 86.252 86.981 -6.1757 115 45 4 0 0 0 0.0090851 3 61447 61191;61318;61447 85.357 40.95 1 82490000 10525 4336 7324 7465 11986;11987;11988 11988 0.06351200137146407 EYIHHLEVI 9 Unmodified _EYIHHLEVI_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8729248046875 3 384.873113 1151.59751 0.19604 7.5452E-05 0.30449 0.00011719 0.50053 0.00019264 384.87331498352637 45.771 0.21857 45.771 45.664 45.882 0 22 10 3 0 0 0 0.038285 1 24955 24955 45.7 5.7499 1 7184200 10526 6716 7325 7466 11989 11989 0.027774145060448063 EYIIEYPHF 9 Unmodified _EYIIEYPHF_ 0 0 0 ENSG00000112992|ENST00000344920|NNT ENSG00000112992|ENST00000344920|NNT ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2949829101562 2 605.792589 1209.57063 -0.48319 -0.00029271 1.2865 0.00077933 0.80327 0.00048662 606.2946685047956 70.905 0.19527 70.905 70.87 71.065 0 18 10 2 0 0 0 0.15471 1 39522 39522 38.151 30.862 1 1775200 10527 2936 7326 7467 11990 11990 -0.02577694105161754 EYIIEYPHF 9 Unmodified _EYIIEYPHF_ 0 0 0 ENSG00000112992|ENST00000344920|NNT ENSG00000112992|ENST00000344920|NNT ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7938232421875 2 605.792589 1209.57063 0.47165 0.00028572 0.86579 0.00052449 1.3374 0.00081021 605.7928873735441 71.432 0.32922 70.955 70.767 71.097 -0.47735 35 13 3 0 0 0 0.07087 2 39043 39043;39143 53.576 43.502 1 2439300 10528 2936 7326 7467 11991;11992 11991 -0.02577694105161754 EYIKFLDLF 9 Unmodified _EYIKFLDLF_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3220825195312 2 594.320983 1186.62741 3.942 0.0023428 -1.7331 -0.00103 2.2089 0.0013128 594.3199625701317 98.76 0.2254 98.731 98.637 98.863 -0.028282 16 7 3 0 0 0 0.0082475 1 54869 54869 92.653 60.348 1 10323000 10529 9979 7327 7468 11993 11993 0.041563534513670675 EYIKFLDLF 9 Unmodified _EYIKFLDLF_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.3220825195312 2 594.320983 1186.62741 0.38911 0.00023126 1.5515 0.00092209 1.9406 0.0011533 594.3220605058417 100.68 0.11143 94.502 94.445 94.556 -6.1757 15 7 3 0 0 0 0.0047067 1 67393 67393 118.07 64.236 1 41607000 10530 9979 7327 7468 11994 11994 0.041563534513670675 EYIKFLRSI 9 Unmodified _EYIKFLRSI_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2295532226562 3 390.229008 1167.66519 0.30986 0.00012092 0.71675 0.0002797 1.0266 0.00040062 390.22934246306403 59.033 0.29548 58.542 58.369 58.665 -0.49079 43 13 4 0 0 0 0.11784 2 32077 32077;32179 29.437 22.335 1 9912300 10531 9847 7328 7469 11995;11996 11995 0.08806864436837714 EYIKFLRSI 9 Unmodified _EYIKFLRSI_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.841552734375 2 584.839874 1167.66519 0.18741 0.00010961 2.4124 0.0014109 2.5998 0.0015205 584.8416837571369 59.029 0.19231 58.538 58.432 58.625 -0.49079 14 8 2 0 0 0 0.11784 1 32112 32112 31.268 14.326 1 1346600 10532 9847 7328 7469 11997 11997 0.08806864436837714 EYIKFLRSI 9 Unmodified _EYIKFLRSI_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2288513183594 3 390.229008 1167.66519 0.48178 0.00018801 0.11169 4.3585E-05 0.59347 0.00023159 390.22900310530594 58.61 0.77374 58.55 58.353 59.127 -0.060722 86 38 3 0 0 0 0.078314 3 31865 31865;31967;32074 29.437 20.461 1 306380000 10533 9847 7328 7469 11998;11999;12000 11998 0.08806864436837714 EYIKFLRSI 9 Unmodified _EYIKFLRSI_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.840576171875 2 584.839874 1167.66519 0.91541 0.00053537 -0.32107 -0.00018777 0.59434 0.0003476 584.8396419369158 58.581 0.3676 58.52 58.394 58.762 -0.060722 47 18 3 0 0 0 0.0015194 2 31884 31884;31993 135.86 75.79 1 46827000 10534 9847 7328 7469 12001;12002 12001 0.08806864436837714 EYIKFLRSI 9 Unmodified _EYIKFLRSI_ 0 0 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2295532226562 3 390.229008 1167.66519 1.3906 0.00054265 -0.095341 -3.7205E-05 1.2953 0.00050545 390.22893309311786 87.133 0.70965 80.957 80.528 81.237 -6.1757 135 38 4 0 0 0 0.047788 4 57325 57212;57325;57445;57574 42.312 33.336 1 229640000 10535 9847 7328 7469 12003;12004;12005;12006 12004 0.08806864436837714 EYIKGFQKL 9 Unmodified _EYIKGFQKL_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8819885253906 3 375.881608 1124.623 -0.095756 -3.5993E-05 -0.089075 -3.3482E-05 -0.18483 -6.9475E-05 375.88165012056925 40.247 0.24168 40.247 40.11 40.352 0 25 11 3 0 0 0 0.14602 1 21589 21589 26.268 14.027 1 5596300 10536 10929 7329 7470 12007 12007 0.06566889028476908 EYIKGFQKL 9 Unmodified _EYIKGFQKL_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8817138671875 3 375.881608 1124.623 0.65087 0.00024465 -0.53924 -0.00020269 0.11163 4.1961E-05 375.8817466795594 40.613 0.35112 40.31 40.088 40.439 -0.30304 48 16 4 0 0 0 0.026094 2 21463 21419;21463 43.772 32.278 1 22791000 10537 10929 7329 7470 12008;12009 12009 0.06566889028476908 EYIKGFQKL 9 Unmodified _EYIKGFQKL_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.319091796875 2 563.318774 1124.623 0.83516 0.00047046 0.12181 6.8619E-05 0.95697 0.00053908 563.319006357933 40.62 0.22506 40.317 40.193 40.418 -0.30304 31 10 4 0 0 0 0.0086904 1 21465 21465 107.19 65.347 1 8206000 10538 10929 7329 7470 12010 12010 0.06566889028476908 EYIKGFQKL 9 Unmodified _EYIKGFQKL_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8820495605469 3 375.881608 1124.623 1.037 0.0003898 0.019165 7.2039E-06 1.0562 0.00039701 375.88194181888935 44.959 0.40528 40.107 39.905 40.31 -4.852 89 26 4 0 0 0 0.042911 2 27590 27446;27590 38.176 20.357 1 97115000 10539 10929 7329 7470 12011;12012 12012 0.06566889028476908 EYIKGFQKL 9 Unmodified _EYIKGFQKL_ 0 0 0 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3214111328125 2 563.318774 1124.623 0.70923 0.00039952 -0.54843 -0.00030894 0.1608 9.058E-05 563.3186101610258 44.957 0.35881 40.105 39.935 40.294 -4.852 61 23 3 0 0 0 0.015445 1 27448 27448 68.081 17.226 1 38013000 10540 10929 7329 7470 12013 12013 0.06566889028476908 EYIKRLEEL 9 Unmodified _EYIKRLEEL_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8320922851562 2 596.832246 1191.64994 0.71155 0.00042468 -0.20605 -0.00012298 0.5055 0.0003017 596.8320472970076 42.628 0.28765 42.628 42.468 42.756 0 40 14 4 0 0 0 0.0087399 2 23039 23039;23157 76.825 22.992 1 14117000 10541 8061 7330 7471 12014;12015 12014 0.061779528489978475 EYIKRSNQL 9 Unmodified _EYIKRSNQL_ 0 0 0 ENST00000432329.6_1_2:208462445-208462559:+|nuORF ENST00000432329.6_1_2:208462445-208462559:+|nuORF ENST00000432329.6_1_2:208462445-208462559:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2122497558594 3 384.212017 1149.61422 -0.072271 -2.7768E-05 0.69729 0.00026791 0.62502 0.00024014 384.21221798538494 37.632 0.19389 37.361 37.206 37.4 -0.27133 13 7 3 0 0 0 0.32871 1 19777 19777 10.8 3.6978 1 3481400 10542 13275 7331 7472 12016 12016 0.04539915392001603 EYIKRSNQL 9 Unmodified _EYIKRSNQL_ 0 0 0 ENST00000432329.6_1_2:208462445-208462559:+|nuORF ENST00000432329.6_1_2:208462445-208462559:+|nuORF ENST00000432329.6_1_2:208462445-208462559:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 384.212017 1149.61422 -0.19829 -7.6187E-05 1.5242 0.00058563 1.3259 0.00050944 384.21252902493416 37.273 0.087036 37.295 37.24 37.327 0.021545 -0.033056 0.00075256 NaN 10.8 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 497480 10543 13275 7331 7472 0.04539915392001603 EYILALNEL 9 Unmodified _EYILALNEL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2952880859375 2 539.294965 1076.57538 0.24778 0.00013362 0.64404 0.00034733 0.89181 0.00048095 539.2952894479274 89.143 0.40504 89.143 88.92 89.325 0 50 19 3 0 0 0 0.019303 1 49349 49349 64.236 9.4628 1 4491400 10544 6274 7332 7473 12017 12017 0.040151900376031335 EYILALNEL 9 Unmodified _EYILALNEL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.294965 1076.57538 0.3105 0.00016745 -1.7408 -0.00093879 -1.4303 -0.00077134 539.2933442852459 89.634 0.66483 89.132 88.937 89.601 -0.50172 -0.0056155 -0.002441 NaN 64.236 58 32 3 NaN NaN NaN NaN 0 NaN NaN 0 2348300 10545 6274 7332 7473 0.040151900376031335 EYINFLENL 9 Unmodified _EYINFLENL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7896728515625 2 577.790047 1153.56554 0.31366 0.00018123 -0.58228 -0.00033644 -0.26862 -0.00015521 577.78961675854 96.973 0.40548 96.973 96.752 97.158 0 69 20 4 0 0 0 0.024882 2 53606 53504;53606 58.679 18.721 1 9807200 10546 8967 7333 7474 12018;12019 12019 -0.0050999796776523 EYINFLENL 9 Unmodified _EYINFLENL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7894897460938 2 577.790047 1153.56554 0.43535 0.00025154 -1.1891 -0.00068705 -0.75376 -0.00043552 577.7892723303196 97.406 0.42717 97.163 96.886 97.313 -0.24277 64 18 5 0 0 0 0.024882 2 53200 53099;53200 58.679 18.721 1 26745000 10547 8967 7333 7474 12020;12021 12021 -0.0050999796776523 EYINFLENL 9 Unmodified _EYINFLENL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.791259765625 2 577.790047 1153.56554 1.1804 0.00068205 -0.24026 -0.00013882 0.94019 0.00054323 577.7897645072463 100.35 0.36007 94.174 94.014 94.374 -6.1757 84 22 5 0 0 0 0.015445 1 67027 67027 68.081 28.123 1 1571799999.9999998 10548 8967 7333 7474 12022 12022 -0.0050999796776523 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.8046264648438 2 655.806228 1309.5979 0.17333 0.00011367 0.2219 0.00014552 0.39524 0.0002592 655.8064537351096 66.915 0.29329 66.915 66.747 67.04 0 31 13 3 0 0 0 0.035736 1 37282 37282 65.235 50.397 1 2417800 10549 449 7334 7475 12023 12023 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.8064575195312 2 655.806228 1309.5979 0.50487 0.00033109 0.060607 3.9746E-05 0.56547 0.00037084 655.8063823156905 67.474 0.31754 66.992 66.802 67.119 -0.48219 41 13 4 0 0 0 0.0093042 2 36894 36791;36894 88.954 70.808 1 8451200 10550 449 7334 7475 12024;12025 12025 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20221201_MKP_PDAC_01 4 655.8064575195312 2 655.806228 1309.5979 NaN NaN NaN NaN NaN NaN NaN 75.047 1 68.872 68.372 69.372 -6.1757 0 0 0 0.028528 1 49072 49072 88.954 70.808 1 10551 449 7334 7475 12026 12026 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20221201_MKP_PDAC_01 4 655.8064575195312 2 655.806228 1309.5979 NaN NaN NaN NaN NaN NaN NaN 75.236 1 69.06 68.56 69.56 -6.1757 0 0 0 0.028528 1 49201 49201 88.954 70.808 1 10552 449 7334 7475 12027 12027 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20221201_MKP_PDAC_01 4 655.8068237304688 2 655.806228 1309.5979 NaN NaN NaN NaN NaN NaN NaN 75.424 1 69.249 68.749 69.749 -6.1757 0 0 0 0.018389 1 49327 49327 78.728 60.582 1 10553 449 7334 7475 12028 12028 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20221201_MKP_PDAC_01 4 655.8075561523438 2 655.806228 1309.5979 NaN NaN NaN NaN NaN NaN NaN 75.63 1 69.454 68.954 69.954 -6.1757 0 0 0 0.010158 1 49467 49467 99.799 75.778 1 10554 449 7334 7475 12029 12029 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20221201_MKP_PDAC_01 4 655.8067626953125 2 655.806228 1309.5979 NaN NaN NaN NaN NaN NaN NaN 75.817 1 69.642 69.142 70.142 -6.1757 0 0 0 0.014758 1 49591 49591 69.105 50.959 1 10555 449 7334 7475 12030 12030 -0.04451210564775465 EYIPDLYNHF 10 Unmodified _EYIPDLYNHF_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;ENST00000474707.1_1_9:125835857-125839047:+|nuORF ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 655.806228 1309.5979 1.0361 0.00067948 0.52605 0.00034499 1.5621 0.0010245 655.806431895552 66.964 0.19039 66.982 66.857 67.047 0.018028 0.018697 0.00048905 NaN 88.954 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1996800 10556 449 7334 7475 -0.04451210564775465 EYIPKGTRF 9 Unmodified _EYIPKGTRF_ 0 0 0 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;ENST00000489365.1_1_6:106536291-106543645:+|nuORF nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.8701477050781 3 370.869591 1109.58694 -0.13837 -5.1319E-05 1.409 0.00052254 1.2706 0.00047123 370.8701328428479 32.392 0.23591 32.263 32.095 32.33 -0.12915 18 9 2 0 0 0 0.57331 1 16864 16864 1.7423 0.63252 1 2117000 10557 794 7335 7476 12031 12031 0.0365343185162601 EYIPNNAYL 9 Unmodified _EYIPNNAYL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7696533203125 2 548.769114 1095.52368 0.68212 0.00037433 0.12117 6.6495E-05 0.80329 0.00044082 548.7691957567833 57.35 0.57578 57.35 57.022 57.597 0 45 26 2 0 0 0 0.010818 3 31920 31815;31920;32026 78.149 45.844 1 42348000 10558 3480 7336 7477 12032;12033;12034 12033 -0.020265536563101705 EYIQFVPLL 9 Unmodified _EYIQFVPLL_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.315185546875 2 561.3157 1120.61685 0.50895 0.00028568 -0.63519 -0.00035654 -0.12624 -7.0862E-05 561.3152631842652 100.7 0.13844 100.57 100.49 100.63 -0.13293 15 5 4 0 0 0 0.0095811 1 54969 54969 81.613 37.206 1 15641000 10559 8835 7337 7478 12035 12035 0.06136370796957635 EYIQFVPLL 9 Unmodified _EYIQFVPLL_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3158569335938 2 561.3157 1120.61685 1.2862 0.00072197 -1.3383 -0.00075122 -0.0521 -2.9245E-05 561.3149364550301 100.64 0.11983 100.6 100.53 100.65 -0.04216 12 4 4 0 0 0 0.022193 1 55915 55915 61.357 25.313 1 17456000 10560 8835 7337 7478 12036 12036 0.06136370796957635 EYIQKNVQL 9 Unmodified _EYIQKNVQL_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8123779296875 2 567.811313 1133.60807 0.70095 0.00039801 0.38424 0.00021818 1.0852 0.00061618 567.8115238648518 38.808 0.24734 38.808 38.682 38.929 0 25 10 3 0 0 0 0.0041763 1 20728 20728 120.45 59.093 1 7204800 10561 3924 7338 7479 12037 12037 0.04661397160475644 EYIRALQRL 9 Unmodified _EYIRALQRL_ 0 0 0 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2295227050781 3 387.89614 1160.66659 NaN NaN NaN NaN NaN NaN NaN 43.876 1 43.56 43.06 44.06 -0.31585 0 0 0 0.023279 1 23359 23359 57.722 27.881 1 10562 9184 7339 7480 12038 12038 0.09268498525602809 EYIRALQRL 9 Unmodified _EYIRALQRL_ 0 0 0 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.89599609375 3 387.89614 1160.66659 1.1608 0.00045028 0.36599 0.00014197 1.5268 0.00059225 387.8962267696464 48.723 0.33715 43.327 43.186 43.523 -5.3961 32 19 2 0 0 0 0.07916 2 30339 30339;30463 28.495 13.537 1 44715000 10563 9184 7339 7480 12039;12040 12039 0.09268498525602809 EYIRALQRL 9 Unmodified _EYIRALQRL_ 0 0 0 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 ENSG00000183734|ENST00000331289|ASCL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 581.2719116210938 2 581.340572 1160.66659 0.77689 0.00045164 0.25915 0.00015066 1.036 0.00060229 581.3406233966712 48.691 0.28913 43.294 43.186 43.475 -5.3961 30 16 2 0 0 0 0.18811 1 30392 30392 17.113 9.2027 1 27345000 10564 9184 7339 7480 12041 12041 0.09268498525602809 EYIRMVAEW 9 Oxidation (M) _EYIRM(Oxidation (M))VAEW_ EYIRM(1)VAEW EYIRM(66)VAEW 0 0 1 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.78857421875 2 606.789524 1211.56449 0.16073 9.7532E-05 -1.1632 -0.00070583 -1.0025 -0.0006083 606.7891040528907 49.976 0.2159 49.976 49.859 50.075 0 16 9 2 0 0 0 0.017075 1 27555 27555 66.457 48.31 1 2549600 10565 1253 7340 7481 12042 12042 208 -0.03282535608309445 EYIRMVAEW 9 Oxidation (M) _EYIRM(Oxidation (M))VAEW_ EYIRM(1)VAEW EYIRM(42)VAEW 0 0 1 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7882690429688 2 606.789524 1211.56449 0.55131 0.00033453 -1.7601 -0.001068 -1.2088 -0.00073347 606.7884469935001 50.848 0.25912 50.435 50.298 50.557 -0.41351 22 12 2 0 0 0 0.06294 1 27385 27385 41.84 24.727 1 2227200 10566 1253 7340 7481 12043 12043 208 -0.03282535608309445 EYIRMVAEW 9 Oxidation (M) _EYIRM(Oxidation (M))VAEW_ EYIRM(1)VAEW EYIRM(86)VAEW 0 0 1 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7910766601562 2 606.789524 1211.56449 0.36479 0.00022135 1.3739 0.00083366 1.7387 0.001055 606.7909243204276 56.446 0.26261 50.469 50.266 50.529 -5.9769 22 14 2 0 0 0 0.0089732 1 35990 35990 86.332 51.93 1 13348000 10567 1253 7340 7481 12044 12044 208 -0.03282535608309445 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.301025390625 2 585.301113 1168.58767 0.39657 0.00023211 0.44994 0.00026335 0.84651 0.00049546 585.3013650304327 49.267 0.35773 49.267 49.083 49.441 0 52 16 5 0 0 0 0.0087807 2 27049 27049;27162 106.94 66.99 1 78877000 10568 5335 7341 7482 12045;12046 12045 0.010122265006657472 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3020629882812 2 585.301113 1168.58767 0.6805 0.0003983 1.1274 0.00065987 1.8079 0.0010582 585.3017101500526 49.619 0.3553 49.227 49.057 49.412 -0.3923 71 17 5 0 0 0 0.0047067 1 26732 26732 118.07 80.094 1 252080000 10569 5335 7341 7482 12047 12047 0.010122265006657472 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3023071289062 2 585.301113 1168.58767 0.83601 0.00048932 2.7871 0.0016313 3.6231 0.0021206 585.3028816513045 49.308 0.32687 49.265 49.07 49.397 -0.04369 42 15 4 0 0 0 0.0039711 1 26598 26598 121.53 53.453 1 11060000 10570 5335 7341 7482 12048 12048 0.010122265006657472 EYIRSLNQF 9 Unmodified _EYIRSLNQF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3018188476562 2 585.301113 1168.58767 1.0836 0.00063421 -0.19174 -0.00011223 0.89181 0.00052198 585.3007244154933 55.481 0.57582 49.56 49.285 49.861 -5.9211 141 34 5 0 0 0 0.0086209 3 35460 35198;35329;35460 106.94 61.241 1 961790000 10571 5335 7341 7482 12049;12050;12051 12051 0.010122265006657472 EYISIALRI 9 Unmodified _EYISIALRI_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.270751953125 2 539.318774 1076.623 0.15034 8.1081E-05 -1.38 -0.00074426 -1.2297 -0.00066318 539.3187217466225 76.562 0.25336 76.611 76.422 76.675 0.048935 20 10 2 0 0 0 0.19758 1 42204 42204 13.042 4.2971 1 1722300 10572 526 7342 7483 12052 12052 0.08774889028450161 EYISKTYKI 9 Unmodified _EYISKTYKI_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2129516601562 3 382.213135 1143.61758 -0.52923 -0.00020228 0.65648 0.00025091 0.12725 4.8636E-05 382.2132943135338 33.276 0.23513 33.276 33.13 33.365 0 34 11 4 0 0 0 0.069655 1 17406 17406 40.239 6.7943 1 7867500 10573 4631 7343 7484 12053 12053 0.0515116544600005 EYISKTYKI 9 Unmodified _EYISKTYKI_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8164672851562 2 572.816064 1143.61758 -0.21439 -0.00012281 -0.41501 -0.00023772 -0.6294 -0.00036053 572.815884900217 33.273 0.17737 33.273 33.15 33.327 0 17 8 3 0 0 0 0.11005 1 17457 17457 27.629 2.2295 1 1770400 10574 4631 7343 7484 12054 12054 0.0515116544600005 EYISKTYKI 9 Unmodified _EYISKTYKI_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2141418457031 3 382.213135 1143.61758 1.6661 0.00063682 -0.74386 -0.00028431 0.92228 0.00035251 382.2127849203803 37.482 0.3643 33.198 32.991 33.355 -4.2835 65 21 4 0 0 0 0.12357 2 21908 21908;22034 30.703 14.138 1 40620000 10575 4631 7343 7484 12055;12056 12055 0.0515116544600005 EYISKTYKI 9 Unmodified _EYISKTYKI_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8154907226562 2 572.816064 1143.61758 1.3147 0.00075305 -2.2074 -0.0012644 -0.89275 -0.00051138 572.8150831506099 37.431 0.33074 33.148 33.007 33.338 -4.2835 37 19 3 0 0 0 0.01861 1 22024 22024 53.404 24.322 1 14062000 10576 4631 7343 7484 12057 12057 0.0515116544600005 EYISKTYKI 9 Unmodified _EYISKTYKI_ 0 0 0 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 ENSG00000134697|ENST00000373062|GNL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.213135 1143.61758 -0.24513 -9.3693E-05 -0.5264 -0.0002012 -0.77154 -0.00029489 382.2127384153523 33.357 0.31301 33.198 32.984 33.297 -0.15919 -0.02596 -0.00051564 NaN 40.239 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1685300 10577 4631 7343 7484 0.0515116544600005 EYISTVKTL 9 Unmodified _EYISTVKTL_ 0 0 0 nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5;ENST00000492488.5_1_2:242641480-242651487:+|nuORF;ENST00000489509.1_1_2:242641480-242659033:+|nuORF;ENST00000482774.5_1_2:242641480-242659534:+|nuORF nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2959594726562 2 527.294965 1052.57538 0.66084 0.00034846 -0.35529 -0.00018734 0.30556 0.00016112 527.2951533655879 49.051 0.27894 43.655 43.505 43.784 -5.3961 31 18 2 0 0 0 0.05483 1 30586 30586 43.772 27.925 1 61505000 10578 7757 7344 7485 12058 12058 0.05119190037635235 EYITAFQSI 9 Unmodified _EYITAFQSI_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MSMS AL20221201_MKP_PDAC_01 4 536.271484375 2 536.27149 1070.52843 NaN NaN NaN NaN NaN NaN NaN 79.855 1 73.679 73.179 74.179 -6.1757 0 0 0 0.17247 1 52361 52361 34.102 10.954 1 10579 402 7345 7486 12059 12059 -0.0040166951350784075 EYITDNIKL 9 Unmodified _EYITDNIKL_ 0 0 0 REV__ENSG00000163312|ENST00000295488|HELQ REV__ENSG00000163312|ENST00000295488|HELQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7977294921875 2 554.797872 1107.58119 0.72989 0.00040494 -0.54249 -0.00030097 0.18739 0.00010397 554.797544704616 59.695 0.33062 59.695 59.489 59.819 0 34 14 3 0 0 0 0.1773 1 33246 33246 25.399 6.1423 1 4944300 + 10580 21745 7346 7487 12060 12060 0.031702885492677524 EYIVSVNTL 9 Unmodified _EYIVSVNTL_ 0 0 0 nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2;nc|ENSG00000029153|Q8WYA1-9|BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2801513671875 2 519.279315 1036.54408 NaN NaN NaN NaN NaN NaN NaN 66.346 1 66.346 65.846 66.846 0 0 0 0 0.096036 1 37006 37006 44.407 18.066 1 10581 576 7347 7488 12061 12061 0.027266170035318282 EYKDADLSCCV 11 Unmodified _EYKDADLSCCV_ 0 0 0 REV__nc|ENSG00000182551|Q9BV57-2|ADI1 REV__nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.5257873535156 3 415.842385 1244.50532 0.47563 0.00019779 -1.7704 -0.00073621 -1.2948 -0.00053842 415.84159204902676 62.977 0.17667 62.49 62.365 62.542 -0.48617 10 8 2 0 0 0 0.30551 1 34360 34360 2.6312 0.54523 1 3299000 + 10582 29837 7348 7489 12062 12062 -0.10714799684819809 EYKDEKQSY 9 Unmodified _EYKDEKQSY_ 0 0 0 REV__nc|ENSG00000143549|P06753-5|TPM3 REV__nc|ENSG00000143549|P06753-5|TPM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.1856384277344 3 397.183904 1188.52988 1.2254 0.00048671 1.0591 0.00042064 2.2845 0.00090735 397.18432423942096 19.74 0.34045 17.084 16.898 17.239 -2.6564 70 22 4 0 0 0 0.5029 1 10412 10412 7.609 2.3121 1 39727000 + 10583 20651 7349 7490 12063 12063 -0.05684080215405629 EYKELYRLYYQ 11 Unmodified _EYKELYRLYYQ_ 0 0 0 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2655639648438 3 523.264558 1566.77184 1.0041 0.00052541 1.9855 0.0010389 2.9896 0.0015644 523.2652832598874 34.295 0.31438 30.31 30.115 30.429 -3.9853 26 17 3 0 0 0 0.73506 1 19756 19756 0.32927 0 1 13357000 + 10584 23760 7350 7491 12064 12064 0.011129501407140197 EYKIAFPYL 9 Unmodified _EYKIAFPYL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.3089599609375 2 572.307875 1142.6012 0.77136 0.00044145 0.58461 0.00033458 1.356 0.00077603 572.3081086925849 82.445 0.30988 81.95 81.794 82.104 -0.4952 29 12 3 0 0 0 0.14602 1 45108 45108 28.487 11.545 1 1979300 10585 8403 7351 7492 12065 12065 0.0356008427991128 EYKIAFPYL 9 Unmodified _EYKIAFPYL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.30810546875 2 572.307875 1142.6012 1.6871 0.00096557 -0.023119 -1.3231E-05 1.664 0.00095234 572.3077635992639 81.663 0.42354 81.723 81.507 81.93 0.059937 38 16 3 0 0 0 0.013041 2 45124 45124;45237 71.922 43.435 1 7395500 10586 8403 7351 7492 12066;12067 12066 0.0356008427991128 EYKIAFPYL 9 Unmodified _EYKIAFPYL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3082885742188 2 572.307875 1142.6012 1.3298 0.00076106 0.057589 3.2958E-05 1.3874 0.00079402 572.307918288454 97.101 0.32919 90.925 90.769 91.099 -6.1757 45 18 3 0 0 0 0.0087873 2 64321 64321;64441 103.35 55.008 1 78962000 10587 8403 7351 7492 12068;12069 12068 0.0356008427991128 EYKKYLWS 8 Unmodified _EYKKYLWS_ 0 0 0 REV__ENST00000558066.1_1_15:51507246-51510841:-|nuORF REV__ENST00000558066.1_1_15:51507246-51510841:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2923583984375 2 558.78985 1115.56515 1.0646 0.00059492 1.258 0.00070297 2.3227 0.0012979 559.291750365505 75.369 2.1683 69.193 67.548 69.717 -6.1757 258 114 3 0 0 0 0.72664 2 48958 48584;48958 10.824 0 1 28915000 + 10588 20279 7352 7493 12070;12071 12071 0.011986271030536955 EYKLQNETL 9 Unmodified _EYKLQNETL_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2933959960938 2 569.292953 1136.57135 0.79466 0.00045239 -1.1934 -0.00067937 -0.39871 -0.00022698 569.2921115904429 43.705 0.46097 38.94 38.618 39.079 -4.7648 54 28 3 0 0 0 0.030212 1 26579 26579 69.105 19.172 1 14098000 10589 5691 7353 7494 12072 12072 0.008531005438953798 EYKLRSYTL 9 Unmodified _EYKLRSYTL_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MSMS AL20221201_MKP_PDAC_01 4 587.2922973632812 2 586.819138 1171.62372 NaN NaN NaN NaN NaN NaN NaN 44.761 1 39.909 39.409 40.409 -4.852 0 0 0 0.083147 1 27362 27362 43.772 9.3707 1 10590 853 7354 7495 12073 12073 0.04477683677509958 EYKNTNEMF 9 Oxidation (M) _EYKNTNEM(Oxidation (M))F_ EYKNTNEM(1)F EYKNTNEM(100)F 0 0 1 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2533569335938 2 596.252971 1190.49139 0.041838 2.4946E-05 0.78811 0.00046991 0.82995 0.00049486 596.2533496858584 26.519 0.54308 23.567 23.358 23.901 -2.9511 39 28 2 0 0 0 0.0085164 2 14710 14567;14710 99.799 59.842 1 7900900 10591 895 7355 7496 12074;12075 12075 139 -0.0962370912161532 EYKNTNEMF 9 Unmodified _EYKNTNEMF_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2557983398438 2 588.255514 1174.49647 0.54766 0.00032217 0.57371 0.00033749 1.1214 0.00065965 588.2562318084939 39.614 0.42208 35.163 34.98 35.402 -4.4509 53 26 3 0 0 0 0.0090524 1 23555 23555 85.642 45.684 1 26715000 10592 895 7355 7497 12076 12076 -0.08379405258983752 EYKRIVAC 8 Unmodified _EYKRIVAC_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2614440917969 2 491.262945 980.511337 0.19986 9.8183E-05 -3.4587 -0.0016991 -3.2588 -0.0016009 491.2620864381957 37.955 0.18048 37.684 37.58 37.761 -0.27133 10 8 2 0 0 0 0.63229 1 20003 20003 23.148 1.4018 1 1198800 + 10593 186 7356 7498 12077 12077 0.02030131399669699 EYKTVHEEL 9 Unmodified _EYKTVHEEL_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2855834960938 2 574.285128 1146.5557 -0.051269 -2.9443E-05 0.18875 0.0001084 0.13748 7.8954E-05 574.2852872056543 24.138 0.22268 24.138 24.016 24.239 0 28 11 3 0 0 0 0.0094097 1 12301 12301 82.529 44.354 1 4554900 10594 1489 7357 7499 12078 12078 -0.01171185973134925 EYKTVHEEL 9 Unmodified _EYKTVHEEL_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2854614257812 2 574.285128 1146.5557 0.57885 0.00033243 -0.26149 -0.00015017 0.31736 0.00018225 574.2848159333578 27.072 0.32677 24.036 23.854 24.18 -3.0365 41 16 3 0 0 0 0.0074582 2 14908 14908;15030 110.55 66.694 1 25230000 10595 1489 7357 7499 12079;12080 12079 -0.01171185973134925 EYKVDPEH 8 Unmodified _EYKVDPEH_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7369689941406 2 508.737814 1015.46108 -0.069591 -3.5404E-05 -0.26486 -0.00013474 -0.33445 -0.00017015 508.7377286933221 24.128 0.15267 24.128 24.037 24.19 0 10 7 2 0 0 0 0.79887 1 12334 12334 7.2892 0.56607 1 837080 10596 313 7358 7500 12081 12081 -0.046036997244755185 EYKVIQTYL 9 Unmodified _EYKVIQTYL_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8164672851562 2 578.816064 1155.61758 0.54526 0.00031561 -0.29799 -0.00017248 0.24727 0.00014312 578.8159297129774 57.329 0.19353 56.839 56.75 56.943 -0.48974 15 8 2 0 0 0 0.32871 1 31167 31167 15.847 2.3393 1 1747200 10597 657 7359 7501 12082 12082 0.045991654460067366 EYKVIQTYL 9 Unmodified _EYKVIQTYL_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.816064 1155.61758 0.36459 0.00021103 -0.77961 -0.00045125 -0.41501 -0.00024022 578.8154298589527 56.835 0.17616 56.835 56.746 56.922 0 -0.0020619 -0.00039011 NaN 15.847 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 854640 10598 657 7359 7501 0.045991654460067366 EYKVLEDKI 9 Unmodified _EYKVLEDKI_ 0 0 0 ENST00000497465.1_1_15:44065316-44067617:-|nuORF;nc|ENSG00000128886|Q9HB65-2|ELL3;ENST00000417761.2_1_15:44065316-44087594:-|nuORF;ENSG00000128886|ENST00000319359|ELL3;ENST00000467869.5_1_15:44065316-44068571:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF ENST00000497465.1_1_15:44065316-44067617:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8140258789062 2 568.813522 1135.61249 NaN NaN NaN NaN NaN NaN NaN 52.179 1 52.179 51.679 52.679 0 0 0 0 0.29524 1 28867 28867 25.399 2.663 1 10599 4097 7360 7502 12083 12083 0.05010861583377846 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7772216796875 2 585.776939 1169.53933 0.33709 0.00019746 0.68982 0.00040408 1.0269 0.00060154 585.7772606708082 72.877 0.41953 72.877 72.657 73.076 0 63 20 4 0 0 0 0.052168 2 40588 40491;40588 44.407 19.008 1 8695400 10600 1752 7361 7503 12084;12085 12085 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7774047851562 2 585.776939 1169.53933 0.59052 0.00034591 -0.40224 -0.00023563 0.18827 0.00011029 585.7766996538129 73.36 0.59038 72.884 72.451 73.042 -0.47588 85 26 4 0 0 0 0.023164 2 40182 40076;40182 60.39 28.56 1 17936000 10601 1752 7361 7503 12086;12087 12087 -0.038662671392330594 EYLADLYHF 9 Unmodified _EYLADLYHF_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.7774658203125 2 585.776939 1169.53933 NaN NaN NaN NaN NaN NaN NaN 72.91 1 72.952 72.452 73.452 0.041725 0 0 0 0.23581 1 40159 40159 28.487 12.64 1 10602 1752 7361 7503 12088 12088 -0.038662671392330594 EYLAHPSTL 9 Unmodified _EYLAHPSTL_ 0 0 0 ENSG00000141378|ENST00000393038|PTRH2 ENSG00000141378|ENST00000393038|PTRH2 ENSG00000141378|ENST00000393038|PTRH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7647094726562 2 515.763832 1029.51311 0.22598 0.00011655 0.65523 0.00033795 0.88122 0.0004545 515.7643164141604 37.883 0.28378 37.883 37.724 38.007 0 25 13 2 0 0 0 0.0082281 1 20175 20175 92.822 65.938 1 6911700 10603 5320 7362 7504 12089 12089 -0.00046536310719602625 EYLARIQGF 9 Unmodified _EYLARIQGF_ 0 0 0 nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2 nc|ENSG00000040341|Q9NUL3-8|STAU2 nc|ENSG00000040341|Q9NUL3-8|STAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.792724609375 2 548.792924 1095.57129 -0.959 -0.00052629 0.7216 0.00039601 -0.23739 -0.00013028 548.7934523500375 56.25 0.17179 55.765 55.672 55.843 -0.48554 11 8 2 0 0 0 0.0090948 1 30550 30550 85.272 51.17 1 2735500 10604 649 7363 7505 12090 12090 0.027331453345595946 EYLARIQGF 9 Unmodified _EYLARIQGF_ 0 0 0 nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;nc|ENSG00000040341|Q9NUL3-4|STAU2;nc|ENSG00000040341|Q9NUL3-6|STAU2 nc|ENSG00000040341|Q9NUL3-8|STAU2 nc|ENSG00000040341|Q9NUL3-8|STAU2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.792924 1095.57129 -0.16253 -8.9197E-05 2.6079 0.0014312 2.4453 0.001342 548.7944029705153 55.604 0.19001 55.536 55.456 55.646 -0.068737 -0.11457 0.00078375 NaN 85.272 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 5285000 10605 649 7363 7505 0.027331453345595946 EYLDDRNTF 9 Unmodified _EYLDDRNTF_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7646484375 2 586.76456 1171.51457 0.083039 4.8724E-05 -0.031096 -1.8246E-05 0.051942 3.0478E-05 586.7644443042591 39.806 0.27067 39.806 39.681 39.952 0 29 13 3 0 0 0 0.044011 1 21332 21332 47.749 31.902 1 4605900 10606 5341;30196 7364 7506 12091 12091 -0.06432947012626755 EYLDRAEKL 9 Unmodified _EYLDRAEKL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5359191894531 3 379.536389 1135.58734 -0.12159 -4.6146E-05 0.05355 2.0324E-05 -0.068036 -2.5822E-05 379.5363668304808 31.612 0.29482 31.612 31.463 31.758 0 53 14 4 0 0 0 0.094149 2 16432 16432;16530 32.037 8.2477 1 56451000 10607 3445 7365 7507 12092;12093 12092 0.02496806780800398 EYLDRAEKL 9 Unmodified _EYLDRAEKL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7996215820312 2 568.800946 1135.58734 0.16149 9.1854E-05 -0.26038 -0.00014811 -0.098895 -5.6252E-05 568.8007531742975 31.606 0.31499 31.606 31.463 31.778 0 43 15 4 0 0 0 0.0085386 1 16434 16434 100.09 43.914 1 13112000 10608 3445 7365 7507 12094 12094 0.02496806780800398 EYLDRAEKL 9 Unmodified _EYLDRAEKL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5369262695312 3 379.536389 1135.58734 1.6314 0.00061917 -0.93 -0.00035297 0.70139 0.0002662 379.53630736034097 36.053 0.54517 31.86 31.555 32.1 -4.1928 110 33 4 0 0 0 0.28023 2 20909 20909;21043 17.443 7.8987 1 183110000 10609 3445 7365 7507 12095;12096 12095 0.02496806780800398 EYLDRAEKL 9 Unmodified _EYLDRAEKL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8023681640625 2 568.800946 1135.58734 1.2472 0.00070942 0.48763 0.00027737 1.7349 0.00098679 568.8015780855932 36.064 0.47 31.871 31.648 32.118 -4.1928 77 28 4 0 0 0 0.0039711 2 20913 20913;21044 121.53 65.357 1 67452000 10610 3445 7365 7507 12097;12098 12097 0.02496806780800398 EYLDRAEKL 9 Unmodified _EYLDRAEKL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.536389 1135.58734 -0.2198 -8.3421E-05 0.12479 4.7361E-05 -0.09501 -3.606E-05 379.87071656992407 31.403 0.10823 31.433 31.391 31.499 0.030106 -0.20223 0.00049074 NaN 32.037 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1037000 10611 3445 7365 7507 0.02496806780800398 EYLDRIGQLF 10 Unmodified _EYLDRIGQLF_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3303833007812 2 627.32987 1252.64519 -0.51706 -0.00032437 -0.28204 -0.00017693 -0.7991 -0.0005013 627.3290938442166 77.074 0.22199 76.595 76.479 76.701 -0.47945 27 9 4 0 0 0 0.17714 1 42176 42176 36.506 18.36 1 1151700 10612 10665 7366 7508 12099 12099 0.02897068706238315 EYLDRIGQLF 10 Unmodified _EYLDRIGQLF_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.33056640625 2 627.32987 1252.64519 1.0785 0.00067658 -0.40279 -0.00025268 0.67571 0.0004239 627.3301236766558 94.346 0.45607 88.17 87.916 88.372 -6.1757 53 26 3 0 0 0 0.0065755 2 62556 62432;62556 93.938 48.239 1 13874000 10613 10665 7366 7508 12100;12101 12101 0.02897068706238315 EYLDRIGQLFF 11 Unmodified _EYLDRIGQLFF_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.8662719726562 2 700.864077 1399.7136 1.8206 0.001276 0.66918 0.00046901 2.4898 0.001745 700.8643053081167 92.876 0.41108 92.899 92.692 93.104 0.022987 57 16 5 0 0 0 3.507E-06 2 51596 51596;51699 107.56 72.631 1 47340000 10614 10665 7367 7509 12102;12103 12102 0.029733132860656042 EYLDRIGQLFF 11 Unmodified _EYLDRIGQLFF_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.8624267578125 2 700.864077 1399.7136 0.19336 0.00013552 -0.66619 -0.00046691 -0.47283 -0.00033139 701.3650549609404 99.917 0.18615 93.741 93.652 93.838 -6.1757 42 13 4 0 0 0 1.764E-06 1 66652 66652 121.5 71.976 1 176820000 10615 10665 7367 7509 12104 12104 0.029733132860656042 EYLDRNNKF 9 Unmodified _EYLDRNNKF_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.1990356445312 3 400.199889 1197.57784 -0.69907 -0.00027977 -0.37952 -0.00015188 -1.0786 -0.00043165 400.19961913197375 27.321 0.23187 27.321 27.196 27.427 0 24 11 4 0 0 0 0.23158 1 14045 14045 14.405 0.79051 1 9303700 10616 6658 7368 7510 12105 12105 -0.013049615047293628 EYLDRNNKF 9 Unmodified _EYLDRNNKF_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2007141113281 3 400.199889 1197.57784 1.2307 0.00049252 -0.00089257 -3.5721E-07 1.2298 0.00049216 400.1997805409552 30.66 0.24866 27.163 27.029 27.277 -3.497 17 11 2 0 0 0 0.05447 1 17307 17307 40.239 18.649 1 24489000 10617 6658 7368 7510 12106 12106 -0.013049615047293628 EYLDSMFFD 9 Unmodified _EYLDSMFFD_ 0 0 0 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2957763671875 2 583.739165 1165.46378 0.41956 0.00024491 -0.27283 -0.00015926 0.14672 8.5649E-05 583.73882383115 57.079 0.36262 57.079 56.877 57.239 0 34 15 3 0 0 0 0.20727 1 31686 31686 7.9102 0.62092 1 1851800 10618 10180 7369 7511 12107 12107 -0.11233612381829516 EYLEAHLKF 9 Unmodified _EYLEAHLKF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8697204589844 3 383.86948 1148.58661 -0.076786 -2.9476E-05 0.22448 8.6172E-05 0.1477 5.6696E-05 383.8695472075753 51.634 0.18446 51.201 51.044 51.228 -0.43367 15 9 2 0 0 0 0.14 1 27824 27824 27.223 13.608 1 3866000 10619 6854 7370 7512 12108 12108 0.018260121317553057 EYLEAHLKF 9 Unmodified _EYLEAHLKF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3001708984375 2 575.300581 1148.58661 0.079026 4.5464E-05 0.13452 7.739E-05 0.21355 0.00012285 575.3004882767607 51.611 0.13178 51.177 51.115 51.247 -0.43367 10 6 2 0 0 0 0.06294 1 27838 27838 41.84 16.44 1 2009600 10620 6854 7370 7512 12109 12109 0.018260121317553057 EYLEAHLKF 9 Unmodified _EYLEAHLKF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 383.86948 1148.58661 0.53114 0.00020389 -2.6962 -0.001035 -2.1651 -0.00083111 383.8690570916391 51.1 0.11844 51.1 51.014 51.132 0 -0.050265 -0.0031382 NaN 27.223 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2606800 10621 6854 7370 7512 0.018260121317553057 EYLEDVKSI 9 Unmodified _EYLEDVKSI_ 0 0 0 REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2 REV__nc|ENSG00000111913|Q9Y4F9-2|RIPOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2839965820312 2 548.282054 1094.54956 0.69399 0.0003805 0.51128 0.00028032 1.2053 0.00066083 548.2822547646593 60.129 0.25627 60.129 60.023 60.279 0 23 10 3 0 0 0 0.2143 1 33538 33538 21.747 0 1 2210500 + 10622 17201 7371 7513 12110 12110 0.006062957953417936 EYLEKVCSI 9 Carbamidomethyl (C) _EYLEKVC(Carbamidomethyl (C))SI_ EYLEKVC(1)SI EYLEKVC(86)SI 0 1 0 nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF nc|ENSG00000143376|Q96L92-3|SNX27 nc|ENSG00000143376|Q96L92-3|SNX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7843627929688 2 570.783907 1139.55326 1.2625 0.00072064 -0.46351 -0.00026457 0.79903 0.00045607 570.7843716877637 50.223 0.30511 44.683 44.518 44.824 -5.5391 45 19 3 0 0 0 0.0089732 1 31409 31409 86.332 51.93 1 18798000 10623 5502 7372 7514 12111 12111 565 -0.01093357702461617 EYLELKAKL 9 Unmodified _EYLELKAKL_ 0 0 0 nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8264770507812 2 553.826432 1105.63831 0.46445 0.00025722 0.010489 5.8093E-06 0.47494 0.00026303 553.8264558680287 68.816 0.36533 68.335 68.141 68.506 -0.48071 38 16 3 0 0 0 0.040733 2 37660 37560;37660 53.833 0 1 3105400 10624 7322 7373 7515 12112;12113 12113 0.08971755825655237 EYLELKAKL 9 Unmodified _EYLELKAKL_ 0 0 0 nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 nc|ENSG00000165300|O94991-2|SLITRK5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.826432 1105.63831 0.6015 0.00033313 0.6872 0.00038059 1.2887 0.00071372 553.826299505207 68.274 0.21004 68.3 68.206 68.416 0.025146 -0.017836 0.0006527 NaN 53.833 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1125200 10625 7322 7373 7515 0.08971755825655237 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8004760742188 2 546.800414 1091.58628 0.18309 0.00010011 0.58956 0.00032237 0.77265 0.00042249 547.3035724461596 65.137 0.38492 65.137 64.936 65.32 0 22 16 2 0 0 0 0.43463 1 36305 36305 10.824 2.9138 1 1000700 10626 6889;9141;10440 7374 7516 12114 12114 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8004150390625 2 546.800414 1091.58628 0.35489 0.00019406 -0.56094 -0.00030672 -0.20605 -0.00011267 546.8001050956184 66.177 0.28673 66.177 65.995 66.281 0 21 13 2 0 0 0 0.08691 1 36862 36862 36.127 7.0454 1 2003500 10627 6889;9141;10440 7374 7516 12115 12115 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7998657226562 2 546.800414 1091.58628 NaN NaN NaN NaN NaN NaN NaN 63.456 1 63.456 62.956 63.956 0 0 0 0 0.20153 1 35396 35396 30.637 10.183 1 10628 6889;9141;10440 7374 7516 12116 12116 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7998046875 2 546.800414 1091.58628 0.38979 0.00021313 -0.90429 -0.00049447 -0.51451 -0.00028133 546.7994039400415 62.818 1.1326 62.332 62.1 63.233 -0.48617 117 53 5 0 0 0 0.015445 3 34296 34191;34296;34545 68.081 15.812 1 1769299999.9999998 10629 6889;9141;10440 7374 7516 12117;12118;12119 12118 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.800537109375 2 546.800414 1091.58628 0.30844 0.00016866 0.62704 0.00034287 0.93548 0.00051152 546.8001597444982 62.424 0.44696 62.392 62.239 62.686 -0.032787 58 23 4 0 0 0 0.032796 1 34176 34176 53.833 8.1332 1 113500000 10630 6889;9141;10440 7374 7516 12120 12120 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8009033203125 2 546.800414 1091.58628 0.70387 0.00038488 0.18125 9.911E-05 0.88512 0.00048399 546.7998396405042 68.407 1.6249 62.231 61.769 63.394 -6.1757 330 92 6 0 0 0 0.0094097 7 44957 44469;44601;44728;44847;44957;45077;45199 82.529 15.745 1 4484300000 10631 6889;9141;10440 7374 7516 12121;12122;12123;12124;12125;12126;12127 12125 0.04414592411899321 EYLENALKL 9 Unmodified _EYLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8007202148438 2 546.800414 1091.58628 0.83403 0.00045605 -0.061037 -3.3375E-05 0.77299 0.00042267 546.8003278363057 70.323 1.6247 64.147 63.36 64.985 -6.1757 333 88 6 0 0 0 0.0094097 7 46014 45512;45638;45755;45890;46014;46140;46263 82.529 22.551 1 1168700000 10632 6889;9141;10440 7374 7516 12128;12129;12130;12131;12132;12133;12134 12132 0.04414592411899321 EYLEQISTL 9 Unmodified _EYLEQISTL_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2822265625 2 548.282054 1094.54956 0.37039 0.00020308 0.27371 0.00015007 0.6441 0.00035315 548.282151073564 66.037 0.33601 66.037 65.88 66.216 0 35 16 3 0 0 0 0.031062 1 36798 36798 54.774 24.549 1 7168500 10633 3293 7375 7517 12135 12135 0.006062957953417936 EYLEQISTL 9 Unmodified _EYLEQISTL_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.282054 1094.54956 0.12741 6.9857E-05 0.14756 8.0906E-05 0.27497 0.00015076 548.2824700864634 66.603 0.14532 66.12 66.005 66.15 -0.48324 0.04155 -0.00013323 NaN 54.774 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 651820 10634 3293 7375 7517 0.006062957953417936 EYLERAPEL 9 Unmodified _EYLERAPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.287841796875 2 560.287671 1118.56079 0.5874 0.00032911 -0.35527 -0.00019905 0.23213 0.00013006 560.2874210654056 45.811 0.46379 45.811 45.625 46.088 0 77 22 5 0 0 0 0.0025703 2 24936 24936;25052 128.93 65.492 1 349770000 10635 3021 7376 7518 12136;12137 12136 0.0062511788946721936 EYLERAPEL 9 Unmodified _EYLERAPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.28759765625 2 560.287671 1118.56079 0.68042 0.00038123 0.31446 0.00017619 0.99488 0.00055742 560.28777278171 52.096 0.53957 46.361 46.095 46.635 -5.7345 103 35 4 0 0 0 0.0087224 3 32702 32702;32849;32984 107.1 41.865 1 345430000 10636 3021 7376 7518 12138;12139;12140 12138 0.0062511788946721936 EYLERAPELF 10 Unmodified _EYLERAPELF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.8209838867188 2 633.821878 1265.6292 0.1361 8.6265E-05 -1.0905 -0.00069121 -0.95444 -0.00060495 633.8208815214842 63.39 0.34781 63.39 63.219 63.567 0 49 18 3 0 0 0 0.017375 2 35418 35316;35418 78.06 33.731 1 10985000 10637 3021 7377 7519 12141;12142 12142 0.00701362469317246 EYLERAPELF 10 Unmodified _EYLERAPELF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8212890625 2 633.821878 1265.6292 0.14841 9.4066E-05 -1.5737 -0.00099747 -1.4253 -0.0009034 633.8203652159378 63.895 0.33937 63.41 63.213 63.553 -0.48512 37 18 3 0 0 0 0.0096273 2 34806 34806;34910 88.364 32.187 1 7531200 10638 3021 7377 7519 12143;12144 12143 0.00701362469317246 EYLERAPELF 10 Unmodified _EYLERAPELF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.8247680664062 2 633.821878 1265.6292 0.97292 0.00061666 1.3298 0.00084284 2.3027 0.0014595 633.8225255342595 71.287 0.46664 65.112 64.9 65.367 -6.1757 30 22 2 0 0 0 0.020109 2 46551 46527;46551 75.571 7.5538 1 14356000 10639 3021 7377 7519 12145;12146 12146 0.00701362469317246 EYLERVQAL 9 Unmodified _EYLERVQAL_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8040771484375 2 560.803488 1119.59242 0.28864 0.00016187 -0.38951 -0.00021844 -0.10086 -5.6565E-05 560.8032657975926 47.013 0.31302 47.013 46.858 47.171 0 37 14 3 0 0 0 0.0060143 2 25691 25691;25803 137.42 69.343 1 20349000 10640 4319 7378 7520 12147;12148 12147 0.03741110643431966 EYLERVQAL 9 Unmodified _EYLERVQAL_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8053588867188 2 560.803488 1119.59242 0.86333 0.00048416 0.62166 0.00034863 1.485 0.00083279 560.8034887916879 47.292 0.18273 46.94 46.817 47 -0.3526 14 8 2 0 0 0 0.0099157 1 25326 25326 99.799 49.866 1 3036900 10641 4319 7378 7520 12149 12149 0.03741110643431966 EYLERVQAL 9 Unmodified _EYLERVQAL_ 0 0 0 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 ENSG00000131375|ENST00000253693|CAPN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8043212890625 2 560.803488 1119.59242 0.87245 0.00048928 0.93525 0.00052449 1.8077 0.0010138 560.8037644484472 53.35 0.34535 47.546 47.365 47.711 -5.8042 36 21 2 0 0 0 0.0091809 1 33727 33727 103.35 53.421 1 36416000 10642 4319 7378 7520 12150 12150 0.03741110643431966 EYLESLQCL 9 Carbamidomethyl (C) _EYLESLQC(Carbamidomethyl (C))L_ EYLESLQC(1)L EYLESLQC(64)L 0 1 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MSMS AL20221201_MKP_PDAC_01 4 577.7742309570312 2 577.773539 1153.53253 NaN NaN NaN NaN NaN NaN NaN 77.153 1 70.977 70.477 71.477 -6.1757 0 0 0 0.035065 1 50458 50458 64.236 37.353 1 10643 6246;6244;9359;9876 7379 7521 12151 12151 620 -0.03809948082130177 EYLEYSLKL 9 Unmodified _EYLEYSLKL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.30859375 2 579.308072 1156.60159 0.46129 0.00026723 0.70902 0.00041074 1.1703 0.00067797 579.3082491361182 67.077 0.47056 67.077 66.896 67.366 0 59 20 4 0 0 0 0.0082548 2 37350 37350;37449 96.367 52.508 1 37837000 10644 3289 7380 7522 12152;12153 12152 0.02955459209078981 EYLEYSLKL 9 Unmodified _EYLEYSLKL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.3084106445312 2 579.308072 1156.60159 NaN NaN NaN NaN NaN NaN NaN 67.368 1 67.368 66.868 67.868 0 0 0 0 0.83049 1 37567 37567 3.9444 0.66309 1 10645 3289 7380 7522 12154 12154 0.02955459209078981 EYLEYSLKL 9 Unmodified _EYLEYSLKL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3087158203125 2 579.308072 1156.60159 0.55393 0.00032089 0.18336 0.00010622 0.73728 0.00042711 579.3080578320177 67.524 0.50333 67.042 66.866 67.37 -0.48218 71 21 4 0 0 0 0.0086722 3 36838 36838;36944;37049 88.954 48.997 1 42441000 10646 3289 7380 7522 12155;12156;12157 12155 0.02955459209078981 EYLEYSLKL 9 Unmodified _EYLEYSLKL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3084716796875 2 579.308072 1156.60159 1.007 0.00058334 -0.49097 -0.00028443 0.51598 0.00029891 580.3109918244616 67.003 0.32106 67.021 66.857 67.178 0.018028 47 15 4 0 0 0 0.023481 1 36784 36784 60.074 22.1 1 9678000 10647 3289 7380 7522 12158 12158 0.02955459209078981 EYLFDTHTL 9 Unmodified _EYLFDTHTL_ 0 0 0 ENSG00000181867|ENST00000321339|FTMT ENSG00000181867|ENST00000321339|FTMT ENSG00000181867|ENST00000321339|FTMT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7752075195312 2 569.774396 1137.53424 NaN NaN NaN NaN NaN NaN NaN 66.162 1 66.162 65.662 66.662 0 0 0 0 0.43505 1 36905 36905 18.135 2.2878 1 10648 9002 7381 7523 12159 12159 -0.029025710018686368 EYLFKKYF 8 Unmodified _EYLFKKYF_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.3036499023438 2 569.302593 1136.59063 NaN NaN NaN NaN NaN NaN NaN 27.492 1 27.492 26.992 27.992 0 0 0 0 0.97444 1 14167 14167 5.2307 0.47466 1 + 10649 18801 7382 7524 12160 12160 0.027801016254670685 EYLFQAEDR 9 Unmodified _EYLFQAEDR_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.7772216796875 2 585.774928 1169.5353 0.89572 0.00052469 -0.068158 -3.9925E-05 0.82757 0.00048477 585.7748479527422 83.707 1.1505 77.531 77.005 78.155 -6.1757 151 61 3 0 0 0 0.044011 2 55265 54899;55265 47.749 11.622 1 45951000 10650 10911 7383 7525 12161;12162 12162 -0.04268356632951509 EYLGKFRRL 9 Unmodified _EYLGKFRRL_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5643005371094 3 394.564502 1180.67168 -0.29014 -0.00011448 0.026761 1.0559E-05 -0.26338 -0.00010392 394.56452365726676 32.258 0.31081 32.288 32.13 32.44 0.029743 37 13 4 0 0 0 0.2324 1 16902 16902 20.415 10.871 1 25430000 10651 6391;16287 7384 7526 12163 12163 0.08856802388208962 EYLGKFRRL 9 Unmodified _EYLGKFRRL_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MSMS AL20221201_MKP_PDAC_01 4 394.5645446777344 3 394.564502 1180.67168 NaN NaN NaN NaN NaN NaN NaN 36.427 1 32.235 31.735 32.735 -4.1928 0 0 0 0.49196 1 21271 21271 16.149 7.9936 1 10652 6391;16287 7384 7526 12164 12164 0.08856802388208962 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5536804199219 3 375.553603 1123.63898 0.34295 0.0001288 -0.71759 -0.00026949 -0.37464 -0.0001407 375.5533636041526 53.545 0.22521 53.545 53.42 53.645 0 15 10 2 0 0 0 0.2324 1 29693 29693 20.415 11.438 1 1681900 10653 4592;14245 7385 7527 12165 12165 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5536193847656 3 375.553603 1123.63898 0.29861 0.00011214 -0.47293 -0.00017761 -0.17432 -6.5467E-05 375.5533875720038 54.043 0.47543 53.577 53.327 53.803 -0.46664 82 23 5 0 0 0 0.085319 2 29202 29202;29317 36.506 25.707 1 239590000 10654 4592;14245 7385 7527 12166;12167 12166 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8267211914062 2 562.826766 1123.63898 0.47816 0.00026912 -0.50491 -0.00028417 -0.026741 -1.5051E-05 562.8264772915732 54.041 0.33966 53.575 53.407 53.746 -0.46664 52 16 4 0 0 0 0.013118 2 29331 29222;29331 88.954 40.827 1 67213000 10655 4592;14245 7385 7527 12168;12169 12169 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5537414550781 3 375.553603 1123.63898 -0.34998 -0.00013144 -0.34998 -0.00013143 -0.69995 -0.00026287 375.5533863605666 53.595 1.1259 53.532 53.381 54.507 -0.063423 200 62 6 0 0 0 0.13231 5 29031 29031;29138;29248;29351;29498 29.841 22.739 1 1654799999.9999998 10656 4592;14245 7385 7527 12170;12171;12172;12173;12174 12170 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8265991210938 2 562.826766 1123.63898 0.10024 5.6419E-05 -0.21879 -0.00012314 -0.11854 -6.672E-05 562.8265769702597 53.629 0.78384 53.566 53.402 54.185 -0.063423 135 45 5 0 0 0 0.0099157 3 29032 29032;29140;29252 92.491 50.397 1 652340000 10657 4592;14245 7385 7527 12175;12176;12177 12175 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5540771484375 3 375.553603 1123.63898 0.27584 0.00010359 0.04775 1.7933E-05 0.32359 0.00012152 375.55365467404454 54.657 0.61478 54.59 54.463 55.078 -0.066936 51 30 2 0 0 0 0.2546 2 29713 29713;29834 19.362 14.465 1 3982000 10658 4592;14245 7385 7527 12178;12179 12178 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.553955078125 3 375.553603 1123.63898 0.60143 0.00022587 0.13031 4.8938E-05 0.73174 0.00027481 375.88809691321103 56.907 0.45578 56.838 56.598 57.054 -0.068737 28 22 2 0 0 0 0.34134 2 30992 30976;30992 15.248 6.2722 1 2781000 10659 4592;14245 7385 7527 12180;12181 12181 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5535278320312 3 375.553603 1123.63898 NaN NaN NaN NaN NaN NaN NaN 55.228 1 55.159 54.659 55.659 -0.068737 0 0 0 0.63508 1 30009 30009 11.495 6.1978 1 10660 4592;14245 7385 7527 12182 12182 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5542602539062 3 375.553603 1123.63898 1.5976 0.0006 -0.20146 -7.5658E-05 1.3962 0.00052434 375.5534072185609 59.289 1.3537 53.215 52.387 53.741 -6.0745 157 75 4 0 0 0 0.085319 3 37900 37900;38031;38171 36.506 26.962 1 398090000 10661 4592;14245 7385 7527 12183;12184;12185 12183 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8270263671875 2 562.826766 1123.63898 1.2605 0.00070947 -0.38285 -0.00021548 0.8777 0.00049399 562.8263925618131 59.274 0.53872 53.2 52.953 53.492 -6.0745 91 29 4 0 0 0 0.0082981 3 37928 37928;38057;38201 118.89 75.036 1 263620000 10662 4592;14245 7385 7527 12186;12187;12188 12186 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5540771484375 3 375.553603 1123.63898 1.4863 0.0005582 -0.46781 -0.00017569 1.0185 0.00038251 375.55334985821656 80.281 1.9695 74.105 72.564 74.534 -6.1757 367 97 5 0 0 0 0.085319 8 52008 52008;52141;52273;52405;52532;52659;52781;52906 36.506 29.404 1 1350300000 10663 4592;14245 7385 7527 12189;12190;12191;12192;12193;12194;12195;12196 12189 0.08210595265359188 EYLGKLVRF 9 Unmodified _EYLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8272705078125 2 562.826766 1123.63898 1.1558 0.00065052 -0.37006 -0.00020828 0.78575 0.00044224 562.8264206612374 80.253 2.2243 74.077 72.255 74.479 -6.1757 352 117 5 0 0 0 0.0081887 6 52320 52189;52320;52450;52579;52708;52831 103.75 61.654 1 750260000 10664 4592;14245 7385 7527 12197;12198;12199;12200;12201;12202 12198 0.08210595265359188 EYLGNPPFY 9 Unmodified _EYLGNPPFY_ 0 0 0 nc|ENSG00000164076|Q8NCB2-2|CAMKV nc|ENSG00000164076|Q8NCB2-2|CAMKV nc|ENSG00000164076|Q8NCB2-2|CAMKV MSMS AL20221201_MKP_PDAC_01 4 550.2582397460938 2 550.258382 1098.50221 NaN NaN NaN NaN NaN NaN NaN 42.481 1 37.797 37.297 38.297 -4.6846 0 0 0 0.17247 1 25671 25671 34.102 7.2188 1 10665 16330 7386 7528 12203 12203 -0.04309938684991721 EYLGSMAKI 9 Unmodified _EYLGSMAKI_ 0 0 0 nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF nc|ENSG00000182473|Q9UPT5-2|EXOC7 nc|ENSG00000182473|Q9UPT5-2|EXOC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2627563476562 2 506.26261 1010.51067 NaN NaN NaN NaN NaN NaN NaN 48.703 1 48.703 48.203 49.203 0 0 0 0 0.32177 1 26745 26745 24.021 2.2739 1 10666 9057 7387 7529 12204 12204 0.005832919599697561 EYLGSMAKI 9 Oxidation (M) _EYLGSM(Oxidation (M))AKI_ EYLGSM(1)AKI EYLGSM(60)AKI 0 0 1 nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF nc|ENSG00000182473|Q9UPT5-2|EXOC7 nc|ENSG00000182473|Q9UPT5-2|EXOC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2600708007812 2 514.260068 1026.50558 0.4994 0.00025682 -0.33925 -0.00017446 0.16015 8.236E-05 514.2599604722676 40.466 0.51646 35.937 35.742 36.258 -4.5294 67 31 3 0 0 0 0.023481 2 24087 24087;24214 60.074 11.728 1 25671000 10667 9057 7387 7530 12205;12206 12205 1520 -0.006610119026390748 EYLHIDQRLVF 11 Unmodified _EYLHIDQRLVF_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2569580078125 3 478.257626 1431.75105 0.76825 0.00036742 -0.68664 -0.00032839 0.081611 3.9031E-05 478.25755183218234 67.956 0.32033 67.474 67.255 67.575 -0.48219 31 14 3 0 0 0 0.67892 1 37178 37178 6.2344 3.3911 1 4034400 10668 1773 7388 7531 12207 12207 0.052444045516722326 EYLHIDQRLVF 11 Unmodified _EYLHIDQRLVF_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.5918273925781 3 478.257626 1431.75105 0.37925 0.00018138 -0.47244 -0.00022595 -0.093191 -4.4569E-05 478.5918560024114 67.381 0.21619 67.399 67.258 67.474 0.018036 22 10 3 0 0 0 0.53099 1 37001 37001 14.838 9.7904 1 5211400 10669 1773 7388 7531 12208 12208 0.052444045516722326 EYLHIDQRLVF 11 Unmodified _EYLHIDQRLVF_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.25830078125 3 478.257626 1431.75105 1.3585 0.00064969 0.04857 2.3229E-05 1.407 0.00067292 478.5917209067341 88.252 0.40678 82.077 81.814 82.221 -6.1757 56 22 4 0 0 0 0.40509 2 58253 58118;58253 21.241 16.525 1 25218000 10670 1773 7388 7531 12209;12210 12210 0.052444045516722326 EYLHIDQRLVF 11 Unmodified _EYLHIDQRLVF_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.884521484375 2 716.882801 1431.75105 1.0724 0.00076878 0.62715 0.00044959 1.6995 0.0012184 717.385017356017 88.182 0.37078 82.006 81.869 82.24 -6.1757 28 20 2 0 0 0 0.0011221 1 58245 58245 88.364 72.215 1 8071700 10671 1773 7388 7531 12211 12211 0.052444045516722326 EYLHNCSYF 9 Carbamidomethyl (C) _EYLHNC(Carbamidomethyl (C))SYF_ EYLHNC(1)SYF EYLHNC(79)SYF 0 1 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7553100585938 2 616.755681 1231.49681 0.89089 0.00054946 -0.12374 -7.632E-05 0.76715 0.00047314 616.7555840905311 50.887 0.40395 45.238 45.026 45.43 -5.649 75 24 4 0 0 0 0.010611 2 31886 31886;32015 78.728 49.646 1 150190000 10672 6247 7389 7532 12212;12213 12212 622 -0.10967985539150504 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8189086914062 2 619.819473 1237.62439 0.40533 0.00025123 -0.46375 -0.00028744 -0.058422 -3.6211E-05 619.8192750136476 57.115 0.28086 56.629 56.453 56.734 -0.48554 37 12 4 0 0 0 0.010818 2 30990 30990;31093 78.149 47.513 1 17592000 10673 4554 7390 7533 12214;12215 12214 0.015085231172179192 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8829040527344 3 413.548741 1237.62439 0.36336 0.00015027 -0.57322 -0.00023706 -0.20986 -8.6788E-05 413.5485181686403 57.099 0.34653 56.613 56.453 56.799 -0.48554 46 15 4 0 0 0 0.16226 1 30999 30999 19.362 8.5624 1 15160000 10674 4554 7390 7533 12216 12216 0.015085231172179192 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8824768066406 3 413.548741 1237.62439 0.33963 0.00014045 0.41699 0.00017245 0.75662 0.0003129 413.54888877949946 56.789 0.26021 56.72 56.578 56.839 -0.068737 32 12 3 0 0 0 0.32871 1 30863 30863 10.8 3.1906 1 9258000 10675 4554 7390 7533 12217 12217 0.015085231172179192 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.8204345703125 2 619.819473 1237.62439 0.73219 0.00045383 0.48737 0.00030208 1.2196 0.00075591 619.8195981764228 56.757 0.24139 56.688 56.578 56.82 -0.068737 27 11 3 0 0 0 0.022193 1 30871 30871 61.357 42.1 1 7859700 10676 4554 7390 7533 12218 12218 0.015085231172179192 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.821044921875 2 619.819473 1237.62439 0.86152 0.00053399 0.46715 0.00028955 1.3287 0.00082353 619.8199098719783 86.062 0.66426 79.887 79.513 80.177 -6.1757 89 36 3 0 0 0 0.0071894 2 56825 56695;56825 111.29 55.11 1 22220000 10677 4554 7390 7533 12219;12220 12220 0.015085231172179192 EYLHQHWIL 9 Unmodified _EYLHQHWIL_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5491638183594 3 413.548741 1237.62439 1.3 0.00053759 0.16625 6.8754E-05 1.4662 0.00060635 413.54875060885394 86.128 0.666 79.952 79.547 80.213 -6.1757 96 36 3 0 0 0 0.2143 2 56750 56750;56876 20.415 7.5419 1 43472000 10678 4554 7390 7533 12221;12222 12221 0.015085231172179192 EYLHVKCL 8 Unmodified _EYLHVKCL_ 0 0 0 REV__ENSG00000106034|ENST00000310396|CPED1 REV__ENSG00000106034|ENST00000310396|CPED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7668151855469 2 502.76532 1003.51609 1.2136 0.00061017 0.22331 0.00011227 1.4369 0.00072244 502.7650568859157 55.38 0.37228 49.459 49.334 49.706 -5.9211 34 22 2 0 0 0 0.44122 1 35359 35359 40.449 8.3316 1 19657000 + 10679 18484 7391 7534 12223 12223 0.014470155424533004 EYLIHRFLF 9 Unmodified _EYLIHRFLF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2287902832031 3 413.229119 1236.66553 0.010901 4.5044E-06 -0.12551 -5.1865E-05 -0.11461 -4.736E-05 413.22908358769314 72.258 0.22694 72.299 72.193 72.42 0.041733 23 10 3 0 0 0 0.41742 1 39777 39777 11.495 8.7595 1 3017900 10680 2101 7392 7535 12224 12224 0.05666284156700385 EYLIVFPKL 9 Unmodified _EYLIVFPKL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3338623046875 2 561.333893 1120.65323 NaN NaN NaN NaN NaN NaN NaN 89.624 1 89.624 89.124 90.124 0 0 0 0 0.85359 1 49587 49587 2.0598 0.57785 1 10681 10045 7393 7536 12225 12225 0.09773247693647136 EYLIVFPKL 9 Unmodified _EYLIVFPKL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3341064453125 2 561.333893 1120.65323 0.62742 0.00035219 -0.10356 -5.8133E-05 0.52386 0.00029406 561.3337751049389 90.106 0.47633 89.605 89.364 89.84 -0.50171 77 23 4 0 0 0 0.047714 2 49271 49170;49271 58.679 50.086 1 14885000 10682 10045 7393 7536 12226;12227 12227 0.09773247693647136 EYLIVFPKL 9 Unmodified _EYLIVFPKL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3346557617188 2 561.333893 1120.65323 0.75585 0.00042429 0.15054 8.4501E-05 0.90639 0.00050879 561.3339408298344 89.397 0.48967 89.445 89.187 89.677 0.047852 61 17 5 0 0 0 0.047714 2 49650 49650;49747 58.679 48.495 1 354080000 10683 10045 7393 7536 12228;12229 12228 0.09773247693647136 EYLIVFPKL 9 Unmodified _EYLIVFPKL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3355102539062 2 561.333893 1120.65323 0.74623 0.00041888 0.4992 0.00028022 1.2454 0.0006991 561.3340973557387 99.098 0.20109 92.923 92.807 93.009 -6.1757 42 11 5 0 0 0 0.069655 1 65863 65863 52.268 42.085 1 1961199999.9999998 10684 10045 7393 7536 12230 12230 0.09773247693647136 EYLIVFPKL 9 Unmodified _EYLIVFPKL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.333893 1120.65323 0.35695 0.00020037 -0.12684 -7.1199E-05 0.23011 0.00012917 561.3338431104703 89.599 0.047592 89.599 89.574 89.622 0 0.049652 -0.00015504 NaN 58.679 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 302190 10685 10045 7393 7536 0.09773247693647136 EYLKDPVTI 9 Unmodified _EYLKDPVTI_ 0 0 0 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7960205078125 2 539.294965 1076.57538 0.24778 0.00013362 0.64404 0.00034733 0.89181 0.00048095 539.2952894479274 89.143 0.40504 89.143 88.92 89.325 0 50 19 3 0 0 0 0.39863 1 49250 49250 12.532 0 1 4491400 10686 8642 7394 7537 12231 12231 0.04015190037625871 EYLKFFDF 8 Unmodified _EYLKFFDF_ 0 0 0 ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3;ENST00000519633.1_1_8:18662024-18666359:-|nuORF;ENST00000518963.5_1_8:18656789-18662365:-|nuORF;ENST00000518303.5_1_8:18658714-18662398:-|nuORF;ENST00000519653.5_1_8:18644335-18666359:-|nuORF;nc|ENSG00000156011|Q9NYI0-3|PSD3 ENSG00000156011|ENST00000327040|PSD3 ENSG00000156011|ENST00000327040|PSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7691650390625 2 554.771126 1107.5277 -0.34172 -0.00018958 -1.5551 -0.00086273 -1.8968 -0.0010523 554.7697383183923 78.192 0.43729 77.708 77.492 77.929 -0.48438 68 23 5 0 0 0 0.72953 1 42947 42947 14.582 2.0501 1 25566000 10687 6423 7395 7538 12232 12232 -0.021764641625850345 EYLKFFVF 8 Unmodified _EYLKFFVF_ 0 0 0 ENSG00000059915|ENST00000020673|PSD;nc|ENSG00000059915|A5PKW4-2|PSD ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.79248046875 2 546.791861 1091.56917 NaN NaN NaN NaN NaN NaN NaN 50.446 1 50.054 49.554 50.554 -0.3923 0 0 0 0.94061 1 27165 27165 12.532 0.89125 1 10688 822 7396 7539 12233 12233 0.027047165967587716 EYLKHHNRI 9 Unmodified _EYLKHHNRI_ 0 0 0 ENSG00000125812|ENST00000338121|GZF1;nc|ENSG00000125812|Q9H116-4|GZF1 ENSG00000125812|ENST00000338121|GZF1 ENSG00000125812|ENST00000338121|GZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2233276367188 3 403.887756 1208.64144 -0.65972 -0.00026645 3.0169 0.0012185 2.3572 0.00095204 403.88795534586757 14.797 0.050934 14.797 14.772 14.823 0 21 13 2 0 0 0 0.51218 1 7067 7067 7.1017 4.2584 1 651080 10689 3884 7397 7540 12234 12234 0.04546443723052107 EYLKHHNRI 9 Unmodified _EYLKHHNRI_ 0 0 0 ENSG00000125812|ENST00000338121|GZF1;nc|ENSG00000125812|Q9H116-4|GZF1 ENSG00000125812|ENST00000338121|GZF1 ENSG00000125812|ENST00000338121|GZF1 MSMS AL20221201_MKP_PDAC_01 4 403.8880004882812 3 403.887756 1208.64144 NaN NaN NaN NaN NaN NaN NaN 15.233 1 12.705 12.205 13.205 -2.5273 0 0 0 0.39043 1 7797 7797 14.405 4.8614 1 10690 3884 7397 7540 12235 12235 0.04546443723052107 EYLKHVVLKF 10 Unmodified _EYLKHVVLKF_ 0 0 0 ENST00000475407.5_2_9:127642811-127683993:-|nuORF;ENSG00000136935|ENST00000373555|GOLGA1 ENST00000475407.5_2_9:127642811-127683993:-|nuORF ENST00000475407.5_2_9:127642811-127683993:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.9201965332031 3 425.920174 1274.73869 0.55481 0.00023631 -0.86741 -0.00036945 -0.31259 -0.00013314 425.91978553244576 47.664 0.16094 47.626 47.561 47.722 -0.038643 14 7 2 0 0 0 0.20962 1 25706 25706 40.725 35.322 1 4761200 10691 4884 7398 7541 12236 12236 0.11231412879305935 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8811950683594 3 383.881608 1148.623 -0.27345 -0.00010497 0.3827 0.00014691 0.10925 4.1937E-05 383.88165150095915 61.014 0.30006 60.525 60.374 60.674 -0.48932 40 14 3 0 0 0 0.03568 2 33190 33190;33287 47.594 33.98 1 36914000 10692 10194 7399 7542 12237;12238 12237 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.318359375 2 575.318774 1148.623 -0.14712 -8.464E-05 0.29399 0.00016914 0.14688 8.4501E-05 575.318901224649 61.025 0.29948 60.536 60.395 60.694 -0.48932 24 14 2 0 0 0 0.0032147 1 33211 33211 125.53 94.893 1 7094400 10693 10194 7399 7542 12239 12239 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3194580078125 2 575.318774 1148.623 NaN NaN NaN NaN NaN NaN NaN 61.169 1 60.679 60.179 61.179 -0.48932 0 0 0 0.7453 1 33315 33315 7.9102 2.6795 1 10694 10194 7399 7542 12240 12240 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.318359375 2 575.318774 1148.623 0.46424 0.00026709 2.037 0.0011719 2.5012 0.001439 575.3188744066898 60.652 0.32778 60.609 60.457 60.784 -0.04351 62 16 5 0 0 0 8.5409E-07 2 33034 33034;33140 163.69 115.94 1 61663000 10695 10194 7399 7542 12241;12242 12241 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8817138671875 3 383.881608 1148.623 0.27775 0.00010662 0.2523 9.6855E-05 0.53005 0.00020348 383.88168155213884 60.646 0.47026 60.603 60.436 60.906 -0.04351 60 23 4 0 0 0 0.05447 2 33036 33036;33137 36.506 28.897 1 171870000 10696 10194 7399 7542 12243;12244 12243 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8822937011719 3 383.881608 1148.623 1.1839 0.00045447 0.23909 9.1781E-05 1.423 0.00054626 383.88167595654346 90.205 0.51389 84.029 83.826 84.34 -6.1757 115 29 5 0 0 0 0.05447 3 59499 59499;59634;59770 36.506 25.011 1 219520000 10697 10194 7399 7542 12245;12246;12247 12245 0.054628890284675435 EYLKLLHSF 9 Unmodified _EYLKLLHSF_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3197021484375 2 575.318774 1148.623 0.82106 0.00047237 0.4495 0.0002586 1.2706 0.00073098 575.3190869685858 90.226 0.51389 84.05 83.826 84.34 -6.1757 85 29 4 0 0 0 0.00065891 2 59646 59523;59646 142.08 105.95 1 130520000 10698 10194 7399 7542 12248;12249 12249 0.054628890284675435 EYLKNIIYRF 10 Unmodified _EYLKNIIYRF_ 0 0 0 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.5872192382812 3 453.587084 1357.73942 0.66281 0.00030064 0.2931 0.00013295 0.95591 0.00043359 453.58699874137454 63.085 0.29358 63.063 62.888 63.182 -0.021614 33 14 3 0 0 0 0.078417 1 34485 34485 51.488 43.044 1 7967200 10699 8843 7400 7543 12250 12250 0.07486207528359046 EYLKNIIYRF 10 Unmodified _EYLKNIIYRF_ 0 0 0 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 453.3437805175781 3 453.587084 1357.73942 1.2427 0.00056369 -0.13221 -5.9968E-05 1.1105 0.00050372 453.5869844451051 91.727 0.23587 85.552 85.469 85.705 -6.1757 21 12 2 0 0 0 0.23806 1 60636 60636 5.7834 2.7112 1 10071000 10700 8843 7400 7543 12251 12251 0.07486207528359046 EYLKNVLLQF 10 Unmodified _EYLKNVLLQF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8580322265625 2 633.858264 1265.70197 0.34935 0.00022144 0.8048 0.00051013 1.1542 0.00073157 633.8589350054428 81.927 0.29178 81.432 81.236 81.528 -0.4952 23 10 3 0 0 0 0.62068 1 44835 44835 10.074 3.8681 1 821820 10701 4768 7401 7544 12252 12252 0.07975116262764459 EYLKNVLLQF 10 Unmodified _EYLKNVLLQF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8585205078125 2 633.858264 1265.70197 0.95394 0.00060466 0.083349 5.2832E-05 1.0373 0.0006575 633.858217923293 81.052 0.45095 81.112 80.892 81.343 0.059929 54 17 4 0 0 0 0.01074 2 44766 44766;44874 86.332 53.588 1 11409000 10702 4768 7401 7544 12253;12254 12253 0.07975116262764459 EYLKNVLLQF 10 Unmodified _EYLKNVLLQF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2;ENST00000477523.1_1_2:110602660-110613470:+|nuORF;ENST00000480863.1_1_2:109113406-109124083:+|nuORF ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.8585205078125 2 633.858264 1265.70197 1.1928 0.00075609 -0.0962 -6.0977E-05 1.0966 0.00069511 633.857967749347 98.094 0.16901 91.919 91.831 92 -6.1757 27 10 3 0 0 0 0.0046054 1 64999 64999 99.755 61.58 1 102250000 10703 4768 7401 7544 12255 12255 0.07975116262764459 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.784423828125 2 556.784764 1111.55498 0.33724 0.00018777 0.69719 0.00038819 1.0344 0.00057596 556.7848586914871 52.454 0.7346 52.454 52.016 52.75 0 76 32 4 0 0 0 0.013041 2 29085 28971;29085 71.922 41.286 1 26962000 10704 4629 7402 7545 12256;12257 12257 0.0036601937779323634 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7855834960938 2 556.784764 1111.55498 0.5411 0.00030128 0.97111 0.0005407 1.5122 0.00084198 556.78517925549 52.991 0.36259 52.539 52.36 52.723 -0.45173 52 18 4 0 0 0 0.013041 2 28602 28602;28719 71.922 51.469 1 9154500 10705 4629 7402 7545 12258;12259 12258 0.0036601937779323634 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7869873046875 2 556.784764 1111.55498 0.97073 0.00054049 0.84022 0.00046782 1.8109 0.0010083 556.7854927233778 52.617 0.30027 52.558 52.446 52.746 -0.058918 25 14 3 0 0 0 0.039985 1 28514 28514 49.933 19.296 1 3182700 10706 4629 7402 7545 12260 12260 0.0036601937779323634 EYLKVDAQF 9 Unmodified _EYLKVDAQF_ 0 0 0 ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1;ENST00000466052.1_1_1:33256818-33263474:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7852172851562 2 556.784764 1111.55498 1.1424 0.00063607 -0.40427 -0.00022509 0.73812 0.00041098 556.7842893150993 59.314 0.79828 53.239 52.756 53.555 -6.0745 111 43 4 0 0 0 0.0082353 2 38123 38123;38267 96.111 63.805 1 347450000 10707 4629 7402 7545 12261;12262 12261 0.0036601937779323634 EYLKVGAKLLF 11 Unmodified _EYLKVGAKLLF_ 0 0 0 ENSG00000172432|ENST00000307126|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;nc|ENSG00000172432|Q9BX10-3|GTPBP2;ENST00000432918.5_1_6:43589353-43589629:-|nuORF ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5921020507812 3 427.591946 1279.75401 1.2023 0.00051408 0.20151 8.6162E-05 1.4038 0.00060024 427.92639316292986 92.19 0.29474 86.014 85.806 86.101 -6.1757 38 17 3 0 0 0 0.62014 1 60982 60982 10.315 3.6918 1 26203000 10708 8217 7403 7546 12263 12263 0.12532279676520375 EYLLCFHEF 9 Unmodified _EYLLCFHEF_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7744140625 2 600.773342 1199.53213 -0.37735 -0.0002267 2.4806 0.0014903 2.1033 0.0012636 600.774237165327 44.472 0.3042 44.472 44.305 44.61 0 22 15 2 0 0 0 0.32871 1 24221 24221 15.847 1.0089 1 6162000 10709 3672 7404 7547 12264 12264 -0.05965323011332657 EYLLCFHEF 9 Carbamidomethyl (C) _EYLLC(Carbamidomethyl (C))FHEF_ EYLLC(1)FHEF EYLLC(55)FHEF 0 1 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MSMS AL20221201_MKP_PDAC_01 4 629.2855224609375 2 629.284074 1256.5536 NaN NaN NaN NaN NaN NaN NaN 90.806 1 84.63 84.13 85.13 -6.1757 0 0 0 0.056448 1 59999 59999 54.774 24.137 1 10710 3672 7404 7548 12265 12265 363 -0.06441937982640411 EYLLKAYVL 9 Unmodified _EYLLKAYVL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.324462890625 2 556.323525 1110.6325 0.77998 0.00043392 0.54058 0.00030074 1.3206 0.00073466 556.3238297988454 72.115 0.3111 71.639 71.441 71.752 -0.4761 32 12 3 0 0 0 0.015445 1 39420 39420 68.081 41.197 1 5894100 10711 3218 7405 7549 12266 12266 0.0816065731398794 EYLLKAYVL 9 Unmodified _EYLLKAYVL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.3248901367188 2 556.323525 1110.6325 1.0317 0.00057395 2.4635 0.0013705 3.4951 0.0019444 556.3244656895804 71.538 0.23665 71.577 71.427 71.664 0.039024 16 10 2 0 0 0 0.095405 1 39377 39377 34.102 13.649 1 1910200 10712 3218 7405 7549 12267 12267 0.0816065731398794 EYLLKAYVL 9 Unmodified _EYLLKAYVL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MSMS AL20221201_MKP_PDAC_01 4 556.3244018554688 2 556.323525 1110.6325 NaN NaN NaN NaN NaN NaN NaN 87.688 1 81.512 81.012 82.012 -6.1757 0 0 0 0.074615 1 57831 57831 49.933 15.531 1 10713 3218 7405 7549 12268 12268 0.0816065731398794 EYLLKQTELF 10 Unmodified _EYLLKQTELF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3499755859375 2 642.347729 1282.6809 -0.21617 -0.00013886 2.2799 0.0014645 2.0638 0.0013257 642.348202513375 69.419 0.27647 68.94 68.81 69.086 -0.47903 20 11 3 0 0 0 0.077785 1 37944 37944 51.63 20.993 1 1875100 10714 6242 7406 7550 12269 12269 0.050871061632278725 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8162231445312 2 560.816064 1119.61758 0.53071 0.00029763 -0.59825 -0.00033551 -0.067535 -3.7875E-05 560.8157202501944 59.389 0.36143 59.389 59.241 59.602 0 57 15 5 0 0 0 0.0085164 2 33156 33048;33156 99.799 0 1 71459000 10715 6139 7407 7551 12270;12271 12271 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8160400390625 2 560.816064 1119.61758 0.68638 0.00038493 -1.0787 -0.00060496 -0.39233 -0.00022003 560.8153620368925 59.952 0.62974 59.952 59.716 60.345 0 94 28 5 0 0 0 0.0090948 2 33475 33366;33475 85.272 0 1 278490000 10716 6139 7407 7551 12272;12273 12273 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.816650390625 2 560.816064 1119.61758 0.39349 0.00022067 -0.27027 -0.00015157 0.12322 6.9102E-05 560.8158504433375 59.955 0.27409 59.464 59.333 59.607 -0.49079 36 13 3 0 0 0 0.010611 1 32609 32609 78.728 0 1 17826000 10717 6139 7407 7551 12274 12274 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8164672851562 2 560.816064 1119.61758 0.16898 9.4764E-05 0.46557 0.0002611 0.63454 0.00035586 560.8163967707974 60.437 0.50251 59.946 59.766 60.268 -0.49079 59 24 4 0 0 0 0.0090948 2 32875 32875;32976 85.272 0 1 86738000 10718 6139 7407 7551 12275;12276 12275 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.817138671875 2 560.816064 1119.61758 0.72006 0.00040382 -0.10411 -5.8386E-05 0.61595 0.00034544 560.8160626723557 60.021 0.2299 59.968 59.856 60.086 -0.053062 19 11 2 0 0 0 0.0090948 1 32731 32731 85.272 0 1 6576600 10719 6139 7407 7551 12277 12277 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8155517578125 2 560.816064 1119.61758 NaN NaN NaN NaN NaN NaN NaN 59.616 1 59.563 59.063 60.063 -0.053062 0 0 0 0.074615 1 32499 32499 49.933 0 1 10720 6139 7407 7551 12278 12278 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.81640625 2 560.816064 1119.61758 0.54193 0.00030392 -0.041243 -2.313E-05 0.50069 0.00028079 560.8159387404747 65.736 0.46895 59.56 59.304 59.773 -6.1757 71 27 3 0 0 0 0.011968 2 42717 42717;42855 74.929 0 1 100160000 10721 6139 7407 7551 12279;12280 12279 0.06255165445986677 EYLLKVNEI 9 Unmodified _EYLLKVNEI_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.816650390625 2 560.816064 1119.61758 0.95841 0.00053749 0.97406 0.00054627 1.9325 0.0010838 560.8164584421824 66.188 0.83475 60.012 59.723 60.558 -6.1757 161 47 4 0 0 0 0.0082548 2 42985 42985;43119 103.35 0 1 330500000 10722 6139 7407 7551 12281;12282 12281 0.06255165445986677 EYLLRLADF 9 Unmodified _EYLLRLADF_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1;nc|ENSG00000128965|Q9BUX1-2|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.308837890625 2 570.308406 1138.60226 0.89095 0.00050812 -1.694 -0.00096612 -0.80308 -0.000458 570.3077708707295 81.615 0.28594 81.12 80.95 81.236 -0.4952 22 11 3 0 0 0 0.1685 1 44723 44723 26.268 10.421 1 992030 10723 4104 7408 7552 12283 12283 0.038502986487856106 EYLLRLEPHT 10 Unmodified _EYLLRLEPHT_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.8458862304688 2 635.843145 1269.67174 2.4314 0.001546 1.3162 0.00083688 3.7475 0.0023828 635.8440336973147 96.775 0.33844 96.768 96.562 96.9 -0.007019 25 11 3 0 0 0 0.50362 1 53750 53750 16.149 0.90062 1 3438700 + 10724 21383 7409 7553 12284 12284 0.04768757597526019 EYLMGKFPFF 10 Unmodified _EYLMGKFPFF_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.81640625 2 639.81501 1277.61547 2.3547 0.0015066 -1.7756 -0.0011361 0.57915 0.00037055 639.8140390102187 96.438 0.31046 96.431 96.251 96.562 -0.007019 26 10 3 0 0 0 0.02987 1 53540 53540 68.081 50.968 1 5989800 10725 7189 7410 7554 12285 12285 -0.012235865634693255 EYLMGKFPFF 10 Unmodified _EYLMGKFPFF_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8165283203125 2 639.81501 1277.61547 1.1682 0.00074744 0.1443 9.2328E-05 1.3125 0.00083977 639.8151449236684 100.07 0.19514 93.892 93.819 94.014 -6.1757 42 11 4 0 0 0 0.020813 1 66811 66811 74.929 57.816 1 185670000 10726 7189 7410 7554 12286 12286 -0.012235865634693255 EYLMGKFPFF 10 Oxidation (M) _EYLM(Oxidation (M))GKFPFF_ EYLM(1)GKFPFF EYLM(42)GKFPFF 0 0 1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.8131103515625 2 647.812467 1293.61038 NaN NaN NaN NaN NaN NaN NaN 86.113 1 86.175 85.675 86.675 0.061638 0 0 0 0.21708 1 47749 47749 41.84 17.819 1 10727 7189 7410 7555 12287 12287 1246 -0.024678904260781565 EYLMGKFPFF 10 Oxidation (M) _EYLM(Oxidation (M))GKFPFF_ EYLM(1)GKFPFF EYLM(75)GKFPFF 0 0 1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8126831054688 2 647.812467 1293.61038 0.82212 0.00053258 -0.50459 -0.00032688 0.31754 0.0002057 647.8122005124474 98.525 0.20355 92.349 92.237 92.441 -6.1757 44 14 4 0 0 0 0.020813 1 65382 65382 74.929 46.442 1 193080000 10728 7189 7410 7555 12288 12288 1246 -0.024678904260781565 EYLPSQITI 9 Unmodified _EYLPSQITI_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2876586914062 2 532.28714 1062.55973 -0.034103 -1.8153E-05 -2.1573 -0.0011483 -2.1914 -0.0011664 532.2855965892531 71.41 0.25742 71.41 71.266 71.523 0 33 13 3 0 0 0 0.047196 1 39746 39746 46.021 24.274 1 4856300 10729 3760 7411 7556 12289 12289 0.030949035205594555 EYLPSQITI 9 Unmodified _EYLPSQITI_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.288818359375 2 532.28714 1062.55973 0.49467 0.00026331 0.80009 0.00042588 1.2948 0.00068919 532.287296142873 71.928 0.28268 71.452 71.266 71.549 -0.47609 26 10 3 0 0 0 0.095405 1 39344 39344 34.102 5.6156 1 3879100 10730 3760 7411 7556 12290 12290 0.030949035205594555 EYLPSQITI 9 Unmodified _EYLPSQITI_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2871704101562 2 532.28714 1062.55973 1.3249 0.00070521 -0.54727 -0.00029131 0.77759 0.0004139 532.2864865123158 79.589 0.37518 73.414 73.251 73.626 -6.1757 49 22 3 0 0 0 0.015445 2 52241 52099;52241 68.081 38.24 1 37855000 10731 3760 7411 7556 12291;12292 12292 0.030949035205594555 EYLQEVARI 9 Unmodified _EYLQEVARI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8036499023438 2 560.803488 1119.59242 0.59015 0.00033096 -0.035372 -1.9837E-05 0.55478 0.00031112 560.8034108157345 53.011 0.33684 53.011 52.858 53.195 0 51 15 4 0 0 0 0.044042 2 29353 29353;29466 60.074 25.672 1 45095000 10732 8367 7412 7557 12293;12294 12293 0.03741110643431966 EYLQEVARI 9 Unmodified _EYLQEVARI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8046264648438 2 560.803488 1119.59242 1.0868 0.00060946 0.42707 0.0002395 1.5138 0.00084897 560.8032841656262 59.676 0.49026 53.561 53.237 53.727 -6.1147 56 27 3 0 0 0 0.037253 3 38283 38218;38283;38424 56.177 24.746 1 88715000 10733 8367 7412 7557 12295;12296;12297 12296 0.03741110643431966 EYLQLLNLL 9 Unmodified _EYLQLLNLL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.82666015625 2 559.826432 1117.63831 0.51622 0.00028899 0.26827 0.00015019 0.7845 0.00043918 559.8266390742257 101.38 0.066101 101.25 101.2 101.26 -0.13293 6 2 3 0 0 0 0.03568 1 55331 55331 52.268 18.166 1 1903000 10734 3102 7413 7558 12298 12298 0.08419755825661923 EYLQLLNLL 9 Unmodified _EYLQLLNLL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8278198242188 2 559.826432 1117.63831 -0.22031 -0.00012334 1.8692 0.0010464 1.6489 0.00092311 559.8275948735173 101.36 0.10487 101.32 101.27 101.38 -0.04216 9 3 4 0 0 0 0.022193 1 56325 56325 61.357 14.437 1 56362000 10735 3102 7413 7558 12299 12299 0.08419755825661923 EYLQLLNLL 9 Unmodified _EYLQLLNLL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8262329101562 2 559.826432 1117.63831 0.82306 0.00046077 -0.35884 -0.00020089 0.46422 0.00025988 559.8261724919147 101.81 0.11729 95.636 95.582 95.7 -6.1757 27 8 4 0 0 0 0.0088174 1 68329 68329 103.75 32.615 1 289460000 10736 3102 7413 7558 12300 12300 0.08419755825661923 EYLQREILG 9 Unmodified _EYLQREILG_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2592163085938 2 560.803488 1119.59242 0.65196 0.00036562 1.8333 0.0010281 2.4853 0.0013938 560.804475344029 53.563 0.33613 53.112 52.963 53.3 -0.45173 36 16 3 0 0 0 0.21439 1 29046 29046 8.7454 0 1 3695200 + 10737 22194 7414 7559 12301 12301 0.03741110643431966 EYLRDQFQI 9 Unmodified _EYLRDQFQI_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.3048095703125 2 606.306395 1210.59824 -0.65677 -0.0003982 -0.75392 -0.00045711 -1.4107 -0.00085531 606.3054449508645 55.977 0.18113 55.977 55.934 56.115 0 14 8 2 0 0 0 0.010611 1 31130 31130 78.728 26.46 1 3323900 10738 2250 7415 7560 12302 12302 0.0013620915508454345 EYLREARR 8 Unmodified _EYLREARR_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.80078125 2 546.799072 1091.58359 0.20768 0.00011356 0.075818 4.1457E-05 0.2835 0.00015502 546.7990548830779 62.358 1.2187 62.358 62.143 63.361 0 209 62 6 0 0 0 0.48669 3 35027 34789;34898;35027 36.044 36.044 1 3887299999.9999995 10739 729 7416 7561 12303;12304;12305 12305 0.0414618179761419 EYLRFAHKL 9 Unmodified _EYLRFAHKL_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8892211914062 3 392.888986 1175.64513 -0.37789 -0.00014847 -0.34195 -0.00013435 -0.71984 -0.00028282 392.8887140137139 35.501 0.26425 35.279 35.128 35.393 -0.2224 29 11 3 0 0 0 0.12424 1 18557 18557 28.495 20.549 1 16776000 10740 2541 7417 7562 12306 12306 0.0643311349688247 EYLRFLQTI 9 Unmodified _EYLRFLQTI_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8285522460938 2 591.829506 1181.64446 1.0077 0.0005964 -2.5195 -0.0014911 -1.5118 -0.00089475 591.8277659266308 96.066 0.2403 89.89 89.785 90.025 -6.1757 22 14 2 0 0 0 0.012668 1 63638 63638 72.968 25.219 1 18706000 10741 3680 7418 7563 12307 12307 0.06090274057191891 EYLRIAEM 8 Oxidation (M) _EYLRIAEM(Oxidation (M))_ EYLRIAEM(1) EYLRIAEM(42) 0 0 1 REV__ENST00000510728.5_1_4:108948819-108949120:+|nuORF REV__ENST00000510728.5_1_4:108948819-108949120:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2535400390625 2 520.757692 1039.50083 1.003 0.00052232 -1.2348 -0.00064301 -0.23176 -0.00012069 520.7575764118125 33.332 0.68303 29.347 29.192 29.875 -3.9853 53 38 2 0 0 0 0.42423 1 19256 19256 42.095 7.9921 1 38406000 + 10742 20369 7419 7564 12308 12308 1842 -0.017338960454026164 EYLRQHDKL 9 Unmodified _EYLRQHDKL_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2149353027344 3 401.21565 1200.62512 -0.54369 -0.00021814 -0.28794 -0.00011553 -0.83163 -0.00033366 401.2155383844323 19.102 0.14003 19.102 19.045 19.185 0 20 8 3 0 0 0 0.38785 1 9530 9530 22.658 10.483 1 4625800 10743 8857 7420 7565 12309 12309 0.032833177662723756 EYLRQIFRL 9 Unmodified _EYLRQIFRL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2404479980469 3 413.239907 1236.69789 0.84055 0.00034735 -0.12069 -4.9873E-05 0.71986 0.00029747 413.2398144429223 63.957 0.51413 63.947 63.762 64.276 -0.010532 86 25 5 0 0 0 0.025842 2 34947 34947;35047 57.722 29.227 1 174340000 10744 4845 7421 7566 12310;12311 12310 0.08901071559716911 EYLRQIFRL 9 Unmodified _EYLRQIFRL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3574829101562 2 619.356222 1236.69789 1.2445 0.00077079 -0.35618 -0.0002206 0.88832 0.00055018 619.3559255919511 63.957 0.29362 63.947 63.803 64.097 -0.010532 45 14 4 0 0 0 0.0085526 2 34969 34969;35074 118.07 50.23 1 29467000 10745 4845 7421 7566 12312;12313 12312 0.08901071559716911 EYLRQIFRL 9 Unmodified _EYLRQIFRL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3568725585938 2 619.356222 1236.69789 0.6725 0.00041652 -0.37903 -0.00023475 0.29347 0.00018176 619.3558991551366 93.72 0.35653 87.544 87.412 87.769 -6.1757 60 20 4 0 0 0 0.0033237 2 61999 61999;62125 149.91 79.582 1 73340000 10746 4845 7421 7566 12314;12315 12314 0.08901071559716911 EYLRQIFRL 9 Unmodified _EYLRQIFRL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-5|SMPD4;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;ENST00000438378.2_1_2:132275414-132277996:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2408447265625 3 413.239907 1236.69789 1.0769 0.00044503 -0.89517 -0.00036992 0.18177 7.5115E-05 413.2392501080664 93.709 0.37328 87.533 87.395 87.769 -6.1757 73 21 4 0 0 0 0.025842 1 62006 62006 57.722 33.932 1 178200000 10747 4845 7421 7566 12316 12316 0.08901071559716911 EYLRSIHYI 9 Unmodified _EYLRSIHYI_ 0 0 0 ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5492858886719 3 398.548629 1192.62406 1.2049 0.0004802 0.12534 4.9954E-05 1.3302 0.00053015 398.54831354512436 50.444 0.3068 44.905 44.71 45.017 -5.5391 47 19 3 0 0 0 0.13231 1 31596 31596 29.841 20.297 1 19244000 10748 1154 7422 7567 12317 12317 0.03545103397391358 EYLRSIHYI 9 Unmodified _EYLRSIHYI_ 0 0 0 ENSG00000075399|ENST00000389386|VPS9D1;nc|ENSG00000075399|Q9Y2B5-2|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 MSMS AL20221201_MKP_PDAC_01 4 597.3201293945312 2 597.319306 1192.62406 NaN NaN NaN NaN NaN NaN NaN 50.453 1 44.913 44.413 45.413 -5.5391 0 0 0 0.097684 1 31655 31655 47.749 19.262 1 10749 1154 7422 7567 12318 12318 0.03545103397391358 EYLSLVARL 9 Unmodified _EYLSLVARL_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3118286132812 2 532.310949 1062.60735 NaN NaN NaN NaN NaN NaN NaN 72.988 1 73.03 72.53 73.53 0.041725 0 0 0 0.22437 1 40207 40207 29.082 3.6823 1 10750 1720 7423 7568 12319 12319 0.07854602511406483 EYLSLVARL 9 Unmodified _EYLSLVARL_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.310546875 2 532.310949 1062.60735 1.0038 0.00053434 -0.32144 -0.00017111 0.68237 0.00036323 532.3107841114039 88.776 0.6611 82.601 82.24 82.901 -6.1757 94 36 3 0 0 0 0.009483 3 58627 58508;58627;58749 81.89 39.796 1 58537000 10751 1720 7423 7568 12320;12321;12322 12321 0.07854602511406483 EYLSNCVQI 9 Unmodified _EYLSNCVQI_ 0 0 0 nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;ENSG00000150471|ENST00000683033|ADGRL3 nc|ENSG00000150471|Q9HAR2|ADGRL3 nc|ENSG00000150471|Q9HAR2|ADGRL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7562866210938 2 534.755149 1067.49575 0.99937 0.00053442 -1.7122 -0.00091563 -0.71288 -0.00038121 534.7541944575298 42.615 0.24821 42.615 42.507 42.756 0 20 12 2 0 0 0 0.1773 1 23079 23079 25.399 0 1 3711900 10752 6058 7424 7569 12323 12323 -0.03530199908027498 EYLSRHWLF 9 Unmodified _EYLSRHWLF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5493469238281 3 417.548741 1249.62439 0.3341 0.0001395 0.05277 2.2034E-05 0.38687 0.00016154 417.5487393028519 63.29 0.41088 63.269 63.049 63.46 -0.021614 63 20 4 0 0 0 0.08691 2 34561 34561;34669 36.506 28.897 1 69846000 10753 3128 7425 7570 12324;12325 12324 0.009565231172246058 EYLSRHWLF 9 Unmodified _EYLSRHWLF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8197631835938 2 625.819473 1249.62439 0.59409 0.00037179 -0.42816 -0.00026795 0.16593 0.00010384 625.8189835109068 63.287 0.26973 63.266 63.109 63.379 -0.021614 36 13 3 0 0 0 0.0082548 1 34600 34600 96.367 65.73 1 11833000 10754 3128 7425 7570 12326 12326 0.009565231172246058 EYLSRHWLF 9 Unmodified _EYLSRHWLF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3217163085938 2 625.819473 1249.62439 0.39096 0.00024467 0.048354 3.0261E-05 0.43932 0.00027493 626.320892674264 92.632 0.57162 86.456 86.331 86.903 -6.1757 51 35 2 0 0 0 0.0061223 2 61359 61228;61359 114.2 79.8 1 14311000 10755 3128 7425 7570 12327;12328 12328 0.009565231172246058 EYLSRHWLF 9 Unmodified _EYLSRHWLF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.5495300292969 3 417.548741 1249.62439 0.81636 0.00034087 0.19669 8.2127E-05 1.013 0.000423 417.5488439965736 92.749 0.60148 86.573 86.346 86.948 -6.1757 85 37 3 0 0 0 0.039985 3 61500 61245;61368;61500 45.74 32.867 1 25778000 10756 3128 7425 7570 12329;12330;12331 12331 0.009565231172246058 EYLSRHWLF 9 Unmodified _EYLSRHWLF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MSMS AL20221201_MKP_PDAC_01 4 625.8199462890625 2 625.819473 1249.62439 NaN NaN NaN NaN NaN NaN NaN 92.969 1 86.793 86.293 87.293 -6.1757 0 0 0 0.0083006 1 61504 61504 96.367 52.508 1 10757 3128 7425 7570 12332 12332 0.009565231172246058 EYLTDWVMGTS 11 Unmodified _EYLTDWVMGTS_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.295654296875 2 651.289553 1300.56455 NaN NaN NaN NaN NaN NaN NaN 52.972 1 52.52 52.02 53.02 -0.45173 0 0 0 0.77961 1 28641 28641 13.042 1.4022 1 10758 16480 7426 7571 12333 12333 -0.0737058039896965 EYLTEGNHTI 10 Unmodified _EYLTEGNHTI_ 0 0 0 REV__ENSG00000197961|ENST00000320451|ZNF121 REV__ENSG00000197961|ENST00000320451|ZNF121 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7808227539062 2 588.78021 1175.54587 0.32864 0.0001935 0.098761 5.8148E-05 0.42741 0.00025165 588.7804265436328 97.399 0.24316 97.156 97.001 97.244 -0.24277 25 10 3 0 0 0 0.67755 1 53134 53134 9.3831 4.6271 1 1416600 + 10759 23974 7427 7572 12334 12334 -0.034883739785072976 EYLTKVDKL 9 Unmodified _EYLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2132873535156 3 370.213135 1107.61758 0.5895 0.00021824 -0.92798 -0.00034355 -0.33848 -0.00012531 370.21275156022176 36.551 0.42742 36.551 36.369 36.796 0 75 20 5 0 0 0 0.040733 2 19329 19329;19436 49.527 20.09 1 391590000 10760 5318 7428 7573 12335;12336 12335 0.06807165446002728 EYLTKVDKL 9 Unmodified _EYLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.8165283203125 2 554.816064 1107.61758 0.99991 0.00055477 0.46254 0.00025663 1.4624 0.00081139 554.8154157440044 36.527 0.42742 36.527 36.369 36.796 0 48 20 5 0 0 0 0.0032805 1 19331 19331 103.82 43.75 1 186330000 10761 5318 7428 7573 12337 12337 0.06807165446002728 EYLTKVDKL 9 Unmodified _EYLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2127990722656 3 370.213135 1107.61758 -0.36749 -0.00013605 0.24318 9.0028E-05 -0.12431 -4.6021E-05 370.2130880042819 36.786 0.21854 36.537 36.405 36.623 -0.2497 20 9 3 0 0 0 0.040733 1 19296 19296 49.527 25.726 1 13221000 10762 5318 7428 7573 12338 12338 0.06807165446002728 EYLTKVDKL 9 Unmodified _EYLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8150024414062 2 554.816064 1107.61758 -0.14403 -7.9909E-05 0.020379 1.1307E-05 -0.12365 -6.8602E-05 554.8155611322084 36.792 0.17686 36.543 36.427 36.604 -0.2497 12 7 2 0 0 0 0.012024 1 19310 19310 80.676 38.836 1 8322000 10763 5318 7428 7573 12339 12339 0.06807165446002728 EYLTKVDKL 9 Unmodified _EYLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8143920898438 2 554.816064 1107.61758 0.21459 0.00011906 1.8391 0.0010203 2.0537 0.0011394 554.8162052372755 41.407 0.61544 36.799 36.528 37.144 -4.6079 131 39 4 0 0 0 1.3752E-06 4 24725 24678;24725;24859;25001 176.43 87.473 1 546780000 10764 5318 7428 7573 12340;12341;12342;12343 12341 0.06807165446002728 EYLTPEEMVTF 11 Oxidation (M) _EYLTPEEM(Oxidation (M))VTF_ EYLTPEEM(1)VTF EYLTPEEM(69)VTF 0 0 1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.8111572265625 2 687.810319 1373.60608 0.1728 0.00011885 1.0569 0.00072697 1.2297 0.00084582 687.8110529273496 67.087 0.41087 67.087 66.931 67.342 0 55 17 4 0 0 0 0.0088414 1 37451 37451 69.105 56.062 1 7692900 10765 8519 7429 7574 12344 12344 1445 -0.06577444430308788 EYLTPEEMVTF 11 Oxidation (M) _EYLTPEEM(Oxidation (M))VTF_ EYLTPEEM(1)VTF EYLTPEEM(82)VTF 0 0 1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MSMS AL20221201_MKP_PDAC_01 4 687.8124389648438 2 687.810319 1373.60608 NaN NaN NaN NaN NaN NaN NaN 75.323 1 69.147 68.647 69.647 -6.1757 0 0 0 0.00069163 1 49258 49258 81.89 67.984 1 10766 8519 7429 7574 12345 12345 1445 -0.06577444430308788 EYLTPEEMVTF 11 Unmodified _EYLTPEEMVTF_ 0 0 0 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.812744140625 2 679.812861 1357.61117 -0.020814 -1.415E-05 0.27677 0.00018815 0.25596 0.000174 679.8134998848121 84.867 0.33572 84.867 84.631 84.967 0 33 16 3 0 0 0 0.65108 1 47060 47060 8.7454 5.1489 1 805330 10767 8519 7429 7575 12346 12346 -0.053331405676999566 EYLTPEEMVTF 11 Unmodified _EYLTPEEMVTF_ 0 0 0 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 ENSG00000175467|ENST00000312397|SART1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.81298828125 2 679.812861 1357.61117 1.2701 0.00086341 -0.50294 -0.00034191 0.76714 0.00052151 679.8126280157209 93.912 0.73608 87.736 87.364 88.1 -6.1757 88 42 3 0 0 0 1.3103E-08 4 62150 62013;62150;62272;62406 107.19 87.93 1 25538000 10768 8519 7429 7575 12347;12348;12349;12350 12348 -0.053331405676999566 EYLTTGSFM 9 Unmodified _EYLTTGSFM_ 0 0 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000556925.5_1_14:50264161-50281481:-|nuORF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.736328125 2 524.736425 1047.4583 1.1051 0.0005799 -0.39868 -0.0002092 0.70644 0.0003707 524.7363154686769 71.999 0.20424 65.823 65.656 65.86 -6.1757 14 11 2 0 0 0 0.32871 1 47121 47121 15.847 0.5987 1 16747000 10769 7355 7430 7576 12351 12351 -0.06353291173650177 EYLTYSLKL 9 Unmodified _EYLTYSLKL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.3118286132812 2 565.310615 1128.60668 0.47325 0.00026753 -0.13245 -7.4874E-05 0.3408 0.00019266 565.3104180841791 67.507 0.29649 67.507 67.342 67.639 0 37 13 4 0 0 0 0.078314 2 37605 37605;37706 38.176 11.829 1 7439500 10770 3290 7431 7577 12352;12353 12352 0.04751763071703863 EYLTYSLKL 9 Unmodified _EYLTYSLKL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.3116455078125 2 565.310615 1128.60668 0.82258 0.00046501 -0.75468 -0.00042663 0.0679 3.8385E-05 565.3101423174083 67.952 0.38193 67.47 67.255 67.637 -0.48218 61 17 4 0 0 0 0.0082475 2 37083 37083;37188 92.653 62.017 1 77845000 10771 3290 7431 7577 12354;12355 12354 0.04751763071703863 EYLTYSLKL 9 Unmodified _EYLTYSLKL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3114013671875 2 565.310615 1128.60668 0.61649 0.00034851 -0.032863 -1.8578E-05 0.58363 0.00032993 565.310370618175 67.43 0.27494 67.448 67.297 67.572 0.018028 35 13 3 0 0 0 0.020973 1 36996 36996 62.573 35.689 1 18271000 10772 3290 7431 7577 12356 12356 0.04751763071703863 EYLTYSLKL 9 Unmodified _EYLTYSLKL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3118896484375 2 565.310615 1128.60668 0.91565 0.00051762 0.07844 4.4343E-05 0.99409 0.00056197 565.3106157128422 76.12 1.7242 69.944 68.78 70.504 -6.1757 231 94 3 0 0 0 0.0085164 9 49437 49074;49198;49315;49437;49562;49685;49805;49919;50045 99.799 70.717 1 107020000 10773 3290 7431 7577 12357;12358;12359;12360;12361;12362;12363;12364;12365 12360 0.04751763071703863 EYLYFFRVL 9 Unmodified _EYLYFFRVL_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3356323242188 2 625.334424 1248.6543 2.4816 0.0015518 -2.1343 -0.0013346 0.34729 0.00021718 625.3328465898144 96.422 0.28319 96.415 96.251 96.534 -0.007019 19 9 3 0 0 0 0.040683 1 53560 53560 64.236 26.085 1 2438600 10774 2203 7432 7578 12366 12366 0.039914620625495445 EYLYQLQEF 9 Unmodified _EYLYQLQEF_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;ENSG00000154845|ENST00000400556|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7955932617188 2 616.795329 1231.5761 NaN NaN NaN NaN NaN NaN NaN 76.947 1 76.947 76.447 77.447 0 0 0 0 0.6032 1 42774 42774 12.532 0 1 10775 16284 7433 7579 12367 12367 -0.030420153133491112 EYMAQHLVF 9 Oxidation (M) _EYM(Oxidation (M))AQHLVF_ EYM(1)AQHLVF EYM(48)AQHLVF 0 0 1 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.271484375 2 577.270967 1152.52738 0.48651 0.00028085 -0.68623 -0.00039614 -0.19971 -0.00011529 577.2706444922845 51.619 0.39203 51.619 51.431 51.823 0 54 17 4 0 0 0 0.042911 1 28574 28574 48.346 30.211 1 34999000 10776 5461 7434 7580 12368 12368 1006 -0.04278207154084157 EYMAQHLVF 9 Oxidation (M) _EYM(Oxidation (M))AQHLVF_ EYM(1)AQHLVF EYM(78)AQHLVF 0 0 1 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2713623046875 2 577.270967 1152.52738 1.0056 0.0005805 0.097191 5.6105E-05 1.1028 0.0006366 577.2711535461399 57.356 0.48968 51.329 51.079 51.569 -6.0275 67 26 3 0 0 0 0.010818 1 36580 36580 78.149 56.403 1 64062000 10777 5461 7434 7580 12369 12369 1006 -0.04278207154084157 EYMAQHLVF 9 Unmodified _EYMAQHLVF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2741088867188 2 569.273509 1136.53247 -0.17979 -0.00010235 0.060248 3.4298E-05 -0.11954 -6.8051E-05 569.273440824035 61.192 0.25983 60.703 60.578 60.838 -0.48932 25 12 3 0 0 0 0.042911 1 33308 33308 48.346 28.907 1 4907300 10778 5461 7434 7581 12370 12370 -0.03033903291475326 EYMAQHLVF 9 Unmodified _EYMAQHLVF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENST00000473429.5_1_1:110591964-110592183:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2742309570312 2 569.273509 1136.53247 0.64409 0.00036666 -0.066956 -3.8116E-05 0.57714 0.00032855 569.2734947662719 66.517 0.54745 60.341 60.117 60.664 -6.1757 63 30 3 0 0 0 0.019303 2 43323 43201;43323 64.236 44.797 1 46972000 10779 5461 7434 7581 12371;12372 12372 -0.03033903291475326 EYMEHTYLI 9 Oxidation (M) _EYM(Oxidation (M))EHTYLI_ EYM(1)EHTYLI EYM(78)EHTYLI 0 0 1 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.7730712890625 2 607.773539 1213.53253 -0.68484 -0.00041623 -0.48971 -0.00029763 -1.1746 -0.00071386 607.7738271987489 48.542 0.49502 48.542 48.313 48.808 0 84 23 5 0 0 0 0.010877 2 26563 26563;26673 77.984 38.027 1 127430000 10780 5332 7435 7582 12373;12374 12373 976 -0.06569948082119481 EYMEHTYLI 9 Oxidation (M) _EYM(Oxidation (M))EHTYLI_ EYM(1)EHTYLI EYM(67)EHTYLI 0 0 1 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.7713623046875 2 607.773539 1213.53253 0.30189 0.00018348 -0.024013 -1.4595E-05 0.27788 0.00016889 607.7734730820798 48.82 0.58187 48.449 48.278 48.86 -0.37172 64 30 3 0 0 0 0.016184 1 26173 26173 67.344 27.387 1 10504000 10781 5332 7435 7582 12375 12375 976 -0.06569948082119481 EYMEHTYLI 9 Oxidation (M) _EYM(Oxidation (M))EHTYLI_ EYM(1)EHTYLI EYM(60)EHTYLI 0 0 1 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.773193359375 2 607.773539 1213.53253 1.0024 0.00060924 -0.84559 -0.00051393 0.15682 9.5311E-05 607.7730548372369 54.224 0.51082 48.359 48.02 48.531 -5.8653 100 29 4 0 0 0 0.023164 2 34227 34227;34354 60.39 33.506 1 164090000 10782 5332 7435 7582 12376;12377 12376 976 -0.06569948082119481 EYMEHTYLI 9 Oxidation (M) _EYM(Oxidation (M))EHTYLI_ 0 0 1 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 607.773539 1213.53253 0.4057 0.00024658 0.28205 0.00017142 0.68776 0.000418 607.7732874372163 48.473 0.25212 48.43 48.32 48.573 -0.04369 -0.01498 0.00088388 NaN 77.984 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1455200 10783 5332 7435 7582 976 -0.06569948082119481 EYMEHTYLI 9 Unmodified _EYMEHTYLI_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7764282226562 2 599.776082 1197.53761 -0.83373 -0.00050005 0.91173 0.00054683 0.078002 4.6784E-05 599.7764310355464 55.46 0.32799 55.46 55.283 55.611 0 30 14 3 0 0 0 0.013472 1 30785 30785 70.716 28.876 1 3894500 10784 5332 7435 7583 12378 12378 -0.0532564421951065 EYMEHTYLI 9 Unmodified _EYMEHTYLI_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7760620117188 2 599.776082 1197.53761 -0.29736 -0.00017835 -0.4461 -0.00026756 -0.74345 -0.00044591 599.7754317799609 55.987 0.26187 55.509 55.36 55.621 -0.47798 27 12 3 0 0 0 0.038285 1 30368 30368 50.855 35.008 1 5415500 10785 5332 7435 7583 12379 12379 -0.0532564421951065 EYMEHTYLI 9 Unmodified _EYMEHTYLI_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.77587890625 2 599.776082 1197.53761 -0.10406 -6.2414E-05 -0.15345 -9.2035E-05 -0.25751 -0.00015445 599.7758485517501 61.987 0.48341 55.811 55.537 56.021 -6.1757 80 26 4 0 0 0 0.010877 2 39977 39846;39977 77.984 51.101 1 120540000 10786 5332 7435 7583 12380;12381 12381 -0.0532564421951065 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.785888671875 2 598.78645 1195.55835 -0.081398 -4.874E-05 -0.5665 -0.00033921 -0.6479 -0.00038795 598.786197073351 64.921 0.60036 64.921 64.672 65.272 0 88 26 5 0 0 0 0.013472 2 36240 36132;36240 70.716 43.277 1 67532000 10787 4240 7436 7584 12382;12383 12383 -0.03161053839835404 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7861328125 2 598.78645 1195.55835 0.25254 0.00015122 -0.74466 -0.00044589 -0.49212 -0.00029468 598.786132872904 65.386 0.39751 64.901 64.684 65.081 -0.48428 73 18 5 0 0 0 0.010877 2 35727 35620;35727 77.984 54.836 1 78799000 10788 4240 7436 7584 12384;12385 12385 -0.03161053839835404 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7869262695312 2 598.78645 1195.55835 0.36763 0.00022013 -0.60316 -0.00036117 -0.23553 -0.00014103 598.7865294933121 70.3 1.1697 64.124 63.795 64.965 -6.1757 191 63 4 0 0 0 0.0086629 6 46288 45780;45914;46039;46167;46288;46403 101.72 77.701 1 504320000 10789 4240 7436 7584 12386;12387;12388;12389;12390;12391 12390 -0.03161053839835404 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7870483398438 2 598.78645 1195.55835 0.31625 0.00018936 -0.0027308 -1.6351E-06 0.31351 0.00018773 598.7865403934712 72.668 1.9176 66.492 65.385 67.302 -6.1757 265 99 4 0 0 0 0.0077963 9 47436 46913;47070;47314;47436;47552;47664;47788;47909;48028 109.63 81.142 1 129540000 10790 4240 7436 7584 12392;12393;12394;12395;12396;12397;12398;12399;12400 12395 -0.03161053839835404 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7874755859375 2 598.78645 1195.55835 0.30771 0.00018425 0.26427 0.00015824 0.57197 0.00034249 598.786793826712 73.782 1.3767 67.606 67.263 68.64 -6.1757 214 70 4 0 0 0 0.0086179 7 48598 48140;48250;48368;48480;48598;48722;48857 89.427 60.94 1 109390000 10791 4240 7436 7584 12401;12402;12403;12404;12405;12406;12407 12405 -0.03161053839835404 EYMEHVYLI 9 Unmodified _EYMEHVYLI_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 598.78645 1195.55835 0.46849 0.00028053 0.078419 4.6956E-05 0.54691 0.00032748 598.7864243385067 64.865 0.31704 64.865 64.718 65.035 1.5259E-05 -0.03093 0.00070305 NaN 77.984 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6676000 10792 4240 7436 7584 -0.03161053839835404 EYMEHVYLI 9 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ EYM(1)EHVYLI EYM(97)EHVYLI 0 0 1 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7819213867188 2 606.783907 1211.55326 -0.35765 -0.00021702 -0.84431 -0.00051232 -1.202 -0.00072933 606.7835702743843 56.702 0.57276 56.216 56.032 56.605 -0.48554 110 30 6 0 0 0 0.0083087 2 30723 30723;30827 97.075 64.769 1 291760000 10793 4240 7436 7585 12408;12409 12408 750 -0.04405357702466972 EYMEHVYLI 9 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ EYM(1)EHVYLI EYM(78)EHVYLI 0 0 1 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.7835083007812 2 606.783907 1211.55326 -0.07673 -4.6559E-05 -0.26014 -0.00015785 -0.33687 -0.00020441 606.7837885262167 56.368 0.30374 56.299 56.134 56.438 -0.068741 40 15 3 0 0 0 0.010877 2 30594 30594;30703 77.984 52.585 1 28825000 10794 4240 7436 7585 12410;12411 12410 750 -0.04405357702466972 EYMEHVYLI 9 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ EYM(1)EHVYLI EYM(97)EHVYLI 0 0 1 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.783935546875 2 606.783907 1211.55326 0.29409 0.00017845 -0.052159 -3.1649E-05 0.24193 0.0001468 606.783949848141 62.206 0.83654 56.031 55.708 56.544 -6.1757 122 45 3 0 0 0 0.0083087 3 39954 39954;40207;40341 97.075 64.769 1 1491699999.9999998 10795 4240 7436 7585 12412;12413;12414 12412 750 -0.04405357702466972 EYMEHVYLI 9 Oxidation (M) _EYM(Oxidation (M))EHVYLI_ 0 0 1 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 606.783907 1211.55326 -0.4496 -0.00027281 -1.4229 -0.00086341 -1.8725 -0.0011362 606.783252728212 56.24 0.55787 56.24 56.007 56.564 0 0.04325 -0.0010844 NaN 97.075 142 25 7 NaN NaN NaN NaN 0 NaN NaN 0 1653699999.9999998 10796 4240 7436 7585 750 -0.04405357702466972 EYMEMIIQF 9 Unmodified _EYMEMIIQF_ 0 0 0 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000131620|Q5XXA6-2|ANO1 ENSG00000047617|ENST00000682330|ANO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.275634765625 2 602.27486 1202.53517 0.82824 0.00049883 -0.78554 -0.00047311 0.042699 2.5717E-05 602.2745301637223 50.024 0.14126 49.632 49.55 49.692 -0.3923 13 6 3 0 0 0 0.23158 1 26941 26941 20.454 0 1 1652300 10797 687;4337 7437 7586 12415 12415 -0.05799815948807918 EYMEVRERI 9 Unmodified _EYMEVRERI_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8731384277344 3 408.872895 1223.59686 -0.70576 -0.00028857 0.68452 0.00027988 -0.021246 -8.6868E-06 408.8731979369346 34.271 0.17497 34.271 34.19 34.365 0 21 8 3 0 0 0 0.19349 1 18045 18045 23.801 10.186 1 3910100 10798 1440 7438 7587 12416 12416 -0.005997482053089698 EYMEVRERI 9 Unmodified _EYMEVRERI_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.87353515625 3 408.872895 1223.59686 0.57343 0.00023446 0.31012 0.0001268 0.88355 0.00036126 408.87314495996964 38.773 0.51195 34.322 34.133 34.645 -4.4509 78 24 4 0 0 0 0.26811 2 22848 22848;22983 18.721 8.406 1 109540000 10799 1440 7438 7587 12417;12418 12417 -0.005997482053089698 EYMEVRERI 9 Unmodified _EYMEVRERI_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8079833984375 2 612.805705 1223.59686 0.36351 0.00022276 0.022634 1.387E-05 0.38614 0.00023663 612.8059567925801 38.788 0.3205 34.337 34.152 34.472 -4.4509 44 20 3 0 0 0 0.0089391 2 22883 22883;23010 114.19 45.082 1 31216000 10800 1440 7438 7587 12419;12420 12419 -0.005997482053089698 EYMEVRERI 9 Oxidation (M) _EYM(Oxidation (M))EVRERI_ EYM(1)EVRERI EYM(46)EVRERI 0 0 1 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2046813964844 3 414.204534 1239.59177 0.97535 0.00040399 0.44343 0.00018367 1.4188 0.00058766 414.20492124922066 28.855 0.43745 25.707 25.358 25.796 -3.1482 32 21 2 0 0 0 0.047194 1 16165 16165 46.022 22.221 1 67305000 10801 1440 7438 7588 12421 12421 242 -0.01844052067940538 EYMHLALYCF 10 Carbamidomethyl (C) _EYMHLALYC(Carbamidomethyl (C))F_ EYMHLALYC(1)F EYMHLALYC(48)F 0 1 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.3014526367188 2 673.799034 1345.58352 1.0534 0.00070979 0.90433 0.00060934 1.9577 0.0013191 673.8000468246059 96.279 0.1619 90.103 90.041 90.203 -6.1757 14 9 2 0 0 0 0.092434 1 63803 63803 48.346 37.546 1 6385900 10802 4399 7439 7589 12422 12422 447 -0.07545322308919822 EYMIFDHEF 9 Oxidation (M) _EYM(Oxidation (M))IFDHEF_ EYM(1)IFDHEF EYM(74)IFDHEF 0 0 1 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.7579345703125 2 623.757889 1245.50123 0.24104 0.00015035 0.097687 6.0933E-05 0.33872 0.00021128 623.7577571749293 64.264 0.44987 64.264 64.046 64.496 0 56 19 3 0 0 0 0.012148 2 35882 35775;35882 74.423 51.686 1 2489700 10803 16226 7440 7590 12423;12424 12424 1810 -0.11170521116218879 EYMIFDHEF 9 Oxidation (M) _EYM(Oxidation (M))IFDHEF_ EYM(1)IFDHEF EYM(64)IFDHEF 0 0 1 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.7579956054688 2 623.757889 1245.50123 0.43632 0.00027216 0.62904 0.00039237 1.0654 0.00066453 623.7585268959963 64.754 0.23459 64.269 64.102 64.337 -0.48512 18 10 2 0 0 0 0.019303 1 35326 35326 64.236 41.5 1 1812500 10804 16226 7440 7590 12425 12425 1810 -0.11170521116218879 EYMIFDHEF 9 Oxidation (M) _EYM(Oxidation (M))IFDHEF_ EYM(1)IFDHEF EYM(48)IFDHEF 0 0 1 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.7586059570312 2 623.757889 1245.50123 0.33326 0.00020787 1.923 0.0011995 2.2562 0.0014073 623.7588945770877 64.949 0.23749 64.465 64.338 64.575 -0.48428 23 10 3 0 0 0 0.042911 1 35430 35430 48.346 35.303 1 2041400 10805 16226 7440 7590 12426 12426 1810 -0.11170521116218879 EYMIQFNRL 9 Oxidation (M) _EYM(Oxidation (M))IQFNRL_ EYM(1)IQFNRL EYM(82)IQFNRL 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.3027954101562 2 615.302798 1228.59104 0.45246 0.0002784 -0.074668 -4.5944E-05 0.37779 0.00023246 615.302739336795 58.982 0.41199 58.982 58.829 59.241 0 30 17 2 0 0 0 0.0095811 2 32846 32846;32955 81.613 68.105 1 13767000 10806 16188 7441 7591 12427;12428 12427 1804 -0.014108467169990035 EYMIQFNRL 9 Oxidation (M) _EYM(Oxidation (M))IQFNRL_ EYM(1)IQFNRL EYM(93)IQFNRL 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.3034057617188 2 615.302798 1228.59104 0.45368 0.00027915 -0.40534 -0.00024941 0.048337 2.9742E-05 615.3027208053355 59.531 0.7076 59.04 58.665 59.372 -0.49079 143 33 6 0 0 0 0.0082281 3 32346 32346;32447;32553 104.8 86.653 1 126040000 10807 16188 7441 7591 12429;12430;12431 12429 1804 -0.014108467169990035 EYMIQFNRL 9 Oxidation (M) _EYM(Oxidation (M))IQFNRL_ EYM(1)IQFNRL EYM(93)IQFNRL 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3031005859375 2 615.302798 1228.59104 0.60895 0.00037469 -1.2725 -0.00078299 -0.66358 -0.0004083 615.3022916369532 59.25 0.42785 59.196 58.971 59.399 -0.053062 65 21 4 0 0 0 0.0082281 2 32302 32205;32302 104.8 89.961 1 20176000 10808 16188 7441 7591 12432;12433 12433 1804 -0.014108467169990035 EYMIQFNRL 9 Oxidation (M) _EYM(Oxidation (M))IQFNRL_ EYM(1)IQFNRL EYM(93)IQFNRL 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.3034057617188 2 615.302798 1228.59104 0.88601 0.00054517 -0.17944 -0.00011041 0.70658 0.00043476 615.3028402455623 64.789 1.0096 58.614 58.241 59.251 -6.1757 142 56 4 0 0 0 0.0082281 4 41940 41809;41940;42079;42211 104.8 86.664 1 170580000 10809 16188 7441 7591 12434;12435;12436;12437 12435 1804 -0.014108467169990035 EYMIQFNRL 9 Unmodified _EYMIQFNRL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3068237304688 2 607.305341 1212.59613 0.60699 0.00036863 0.76919 0.00046713 1.3762 0.00083576 607.3058310807044 67.748 0.47024 67.266 67.189 67.659 -0.48219 44 21 4 0 0 0 0.008678 1 37018 37018 88.904 68.45 1 13147000 10810 16188 7441 7592 12438 12438 -0.0016654285436743521 EYMIQFNRL 9 Unmodified _EYMIQFNRL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3081665039062 2 607.305341 1212.59613 0.50411 0.00030615 1.609 0.00097713 2.1131 0.0012833 607.305994389982 67.229 0.19647 67.247 67.197 67.394 0.018028 23 9 3 0 0 0 0.0067112 1 36915 36915 112.59 80.288 1 5572500 10811 16188 7441 7592 12439 12439 -0.0016654285436743521 EYMIQFNRL 9 Unmodified _EYMIQFNRL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3062133789062 2 607.305341 1212.59613 0.64222 0.00039002 1.0374 0.00062999 1.6796 0.00102 607.3060189439427 75.047 0.92509 68.872 68.328 69.253 -6.1757 126 49 3 0 0 0 0.0067112 5 48822 48822;48940;49068;49186;49317 112.59 92.822 1 50042000 10812 16188 7441 7592 12440;12441;12442;12443;12444 12440 -0.0016654285436743521 EYMIQFNRL 9 Unmodified _EYMIQFNRL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3055419921875 2 607.305341 1212.59613 0.51098 0.00031032 -0.57505 -0.00034923 -0.064067 -3.8908E-05 607.3052113682619 75.78 1.0452 69.605 69.119 70.164 -6.1757 178 56 4 0 0 0 0.0067112 4 49806 49435;49558;49684;49806 112.59 89.961 1 82779000 10813 16188 7441 7592 12445;12446;12447;12448 12448 -0.0016654285436743521 EYMIQFNRL 9 Unmodified _EYMIQFNRL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 607.3038330078125 2 607.305341 1212.59613 NaN NaN NaN NaN NaN NaN NaN 76.318 1 70.142 69.642 70.642 -6.1757 0 0 0 0.025979 1 49921 49921 71.134 35.089 1 10814 16188 7441 7592 12449 12449 -0.0016654285436743521 EYMKHTRLF 9 Oxidation (M) _EYM(Oxidation (M))KHTRLF_ EYM(1)KHTRLF EYM(63)KHTRLF 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8114013671875 2 620.81079 1239.60703 0.22908 0.00014221 0.62373 0.00038722 0.85281 0.00052943 620.8107541186172 25.146 0.23286 25.129 25.021 25.254 -0.017006 16 9 2 0 0 0 0.020973 1 12865 12865 62.573 56.367 1 6083300 10815 8706 7442 7593 12450 12450 1471 -0.003191404800872988 EYMKHTRLF 9 Oxidation (M) _EYM(Oxidation (M))KHTRLF_ EYM(1)KHTRLF EYM(42)KHTRLF 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2093811035156 3 414.209619 1239.60703 0.053651 2.2223E-05 -0.18648 -7.7243E-05 -0.13283 -5.502E-05 414.20966624631825 24.844 0.3777 24.869 24.641 25.019 0.024429 58 16 5 0 0 0 0.060956 1 12754 12754 42.312 33.868 1 77479000 10816 8706 7442 7593 12451 12451 1471 -0.003191404800872988 EYMKHTRLF 9 Oxidation (M) _EYM(Oxidation (M))KHTRLF_ EYM(1)KHTRLF EYM(53)KHTRLF 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.209716796875 3 414.209619 1239.60703 0.67344 0.00027894 -0.57201 -0.00023693 0.10143 4.2012E-05 414.20946201356713 27.519 1.03 24.483 24.14 25.17 -3.0365 164 53 5 0 0 0 0.033747 2 15222 15112;15222 53.317 39.702 1 1087000000 10817 8706 7442 7593 12452;12453 12453 1471 -0.003191404800872988 EYMKHTRLF 9 Oxidation (M) _EYM(Oxidation (M))KHTRLF_ EYM(1)KHTRLF EYM(180)KHTRLF 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8101196289062 2 620.81079 1239.60703 0.22118 0.00013731 -0.29384 -0.00018242 -0.072653 -4.5104E-05 620.8107587643897 27.485 0.56656 24.449 24.219 24.785 -3.0365 67 28 3 0 0 0 1.3386E-11 3 15156 15156;15272;15395 179.17 151.54 1 59637000 10818 8706 7442 7593 12454;12455;12456 12454 1471 -0.003191404800872988 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8782653808594 3 408.877981 1223.61211 0.19688 8.0499E-05 0.46601 0.00019054 0.66288 0.00027104 408.8780455289116 31.511 0.22042 31.408 31.284 31.505 -0.10269 14 8 2 0 0 0 0.094149 1 16378 16378 53.404 38.999 1 11312000 10819 8706 7442 7594 12457 12457 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8779907226562 3 408.877981 1223.61211 -0.43661 -0.00017852 -0.13931 -5.6959E-05 -0.57592 -0.00023548 408.87795119832714 31.349 0.2313 31.379 31.247 31.478 0.030106 30 9 4 0 0 0 0.017075 1 16382 16382 61.09 40.675 1 20119000 10820 8706 7442 7594 12458 12458 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8782043457031 3 408.877981 1223.61211 0.7443 0.00030433 -0.30959 -0.00012658 0.43472 0.00017775 408.87785442998467 35.435 0.65274 31.242 30.96 31.613 -4.1928 152 40 5 0 0 0 0.040683 4 20618 20362;20488;20618;20751 42.312 30.072 1 1139900000 10821 8706 7442 7594 12459;12460;12461;12462 12461 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8125610351562 2 612.813333 1223.61211 0.52914 0.00032426 -0.26714 -0.00016371 0.262 0.00016056 612.813297681313 35.439 0.46444 31.246 30.992 31.457 -4.1928 95 28 4 0 0 0 5.7203999999999994E-21 2 20448 20448;20583 197.81 146.95 1 107810000 10822 8706 7442 7594 12463;12464 12463 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8783569335938 3 408.877981 1223.61211 1.1612 0.00047477 -0.25834 -0.00010563 0.90282 0.00036914 408.87804379110173 64.766 2.6932 58.59 57.13 59.824 -6.1757 377 152 3 0 0 0 0.017075 14 41097 40959;41097;41237;41379;41526;41665;41796;41926;42070;42203;42342;42467;42601;42771 61.09 46.685 1 49587000 10823 8706 7442 7594 12465;12466;12467;12468;12469;12470;12471;12472;12473;12474;12475;12476;12477;12478 12466 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 612.8135986328125 2 612.813333 1223.61211 NaN NaN NaN NaN NaN NaN NaN 64.282 1 58.106 57.606 58.606 -6.1757 0 0 0 0.054801 1 41632 41632 55.503 27.016 1 10824 8706 7442 7594 12479 12479 0.009251633825215322 EYMKHTRLF 9 Unmodified _EYMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-SECPEP AL20221201_MKP_PDAC_01 4 613.2412719726562 2 612.813333 1223.61211 0.87478 0.00053608 1.3431 0.00082306 2.2179 0.0013591 612.8140690884037 64.836 0.29068 58.66 58.557 58.847 -6.1757 24 15 2 0 0 0 0.072954 1 42043 42043 47.594 25.848 1 8540900 10825 8706 7442 7594 12480 12480 0.009251633825215322 EYMKIFLKL 9 Oxidation (M) _EYM(Oxidation (M))KIFLKL_ EYM(1)KIFLKL EYM(44)KIFLKL 0 0 1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8388061523438 2 600.838485 1199.66242 0.63267 0.00038013 -0.28356 -0.00017038 0.3491 0.00020975 600.8385541131853 57.426 0.23611 57.36 57.277 57.513 -0.066036 21 11 2 0 0 0 0.05447 1 31276 31276 43.858 29.952 1 1716900 10826 10130 7443 7595 12481 12481 1649 0.07057272987663055 EYMKIFLKL 9 Unmodified _EYMKIFLKL_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5633850097656 3 395.563111 1183.6675 1.219 0.00048217 0.41793 0.00016532 1.6369 0.00064749 395.56329249738644 95.062 0.22128 88.886 88.748 88.969 -6.1757 18 11 2 0 0 0 0.16226 1 62947 62947 24.991 12.75 1 11004000 10827 10130 7443 7596 12482 12482 0.08301576850271886 EYMKIFLKL 9 Unmodified _EYMKIFLKL_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.2952270507812 2 592.841028 1183.6675 0.80908 0.00047965 0.21878 0.0001297 1.0279 0.00060936 592.8412589364336 95.052 0.14428 88.876 88.787 88.931 -6.1757 11 7 2 0 0 0 0.18054 1 62920 62920 22.736 8.8302 1 4072600 10828 10130 7443 7596 12483 12483 0.08301576850271886 EYMLEKSFYQF 11 Oxidation (M) _EYM(Oxidation (M))LEKSFYQF_ EYM(1)LEKSFYQF EYM(100)LEKSFYQF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 750.8408203125 2 750.83941 1499.66427 0.052177 3.9176E-05 0.83951 0.00063034 0.89168 0.00066951 750.8402046875095 66.867 0.30812 66.383 66.216 66.524 -0.48323 47 14 4 0 0 0 1.1447E-06 1 36573 36573 103.82 87.674 1 16135000 10829 640 7444 7597 12484 12484 97 -0.06557762785041632 EYMLEKSFYQF 11 Oxidation (M) _EYM(Oxidation (M))LEKSFYQF_ EYM(1)LEKSFYQF EYM(110)LEKSFYQF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 750.840087890625 2 750.83941 1499.66427 0.15523 0.00011656 -0.47325 -0.00035533 -0.31801 -0.00023878 750.8393435345056 67.174 0.31909 66.692 66.525 66.844 -0.48218 56 14 5 0 0 0 1.267E-08 1 36672 36672 107.56 88.201 1 18878000 10830 640 7444 7597 12485 12485 97 -0.06557762785041632 EYMLEKSFYQF 11 Oxidation (M) _EYM(Oxidation (M))LEKSFYQF_ EYM(1)LEKSFYQF EYM(120)LEKSFYQF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 751.3421020507812 2 750.83941 1499.66427 1.2092 0.00090795 0.56288 0.00042263 1.7721 0.0013306 750.8399139784352 66.373 0.29745 66.383 66.202 66.5 0.0095596 42 14 4 0 0 0 6.1613E-11 1 36394 36394 121.5 96.512 1 8789000 10831 640 7444 7597 12486 12486 97 -0.06557762785041632 EYMLEKSFYQF 11 Oxidation (M) _EYM(Oxidation (M))LEKSFYQF_ EYM(1)LEKSFYQF EYM(110)LEKSFYQF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 750.838623046875 2 750.83941 1499.66427 1.0106 0.00075883 -1.1919 -0.00089491 -0.18124 -0.00013608 750.8383006889783 66.669 0.24377 66.679 66.54 66.784 0.0095673 28 11 3 0 0 0 5.0591E-09 1 36592 36592 114.19 92.649 1 7748800 10832 640 7444 7597 12487 12487 97 -0.06557762785041632 EYMLEKSFYQF 11 Oxidation (M) _EYM(Oxidation (M))LEKSFYQF_ EYM(1)LEKSFYQF EYM(140)LEKSFYQF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 750.8418579101562 2 750.83941 1499.66427 0.80227 0.00060238 -0.087182 -6.546E-05 0.71509 0.00053692 750.8392401151677 75.531 1.0229 69.355 68.871 69.894 -6.1757 136 55 3 0 0 0 1.4928E-20 5 49385 49137;49267;49385;49511;49644 143.21 121.68 1 23052000 10833 640 7444 7597 12488;12489;12490;12491;12492 12490 97 -0.06557762785041632 EYMLEKSFYQF 11 Unmodified _EYMLEKSFYQF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.8421020507812 2 742.841953 1483.66935 0.48503 0.0003603 1.3054 0.00096967 1.7904 0.00133 742.8439883825121 73.608 0.23443 73.132 72.974 73.208 -0.47588 22 9 3 0 0 0 0.31264 2 40265 40251;40265 38.615 33.318 1 2820200 10834 640 7444 7598 12493;12494 12494 -0.05313458922410064 EYMLEKSFYQF 11 Unmodified _EYMLEKSFYQF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 743.3455200195312 2 742.841953 1483.66935 1.1538 0.0008571 -0.24408 -0.00018131 0.90974 0.00067579 742.8417249191514 86.503 0.85158 80.327 79.829 80.681 -6.1757 138 45 4 0 0 0 2.3798E-11 4 56899 56774;56899;57021;57144 162.31 140.95 1 43922000 10835 640 7444 7598 12495;12496;12497;12498 12496 -0.05313458922410064 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(78)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7725830078125 2 598.773874 1195.53319 0.24041 0.00014395 -0.98366 -0.00058899 -0.74326 -0.00044504 598.7733373329463 47.975 0.26114 47.975 47.831 48.092 0 34 12 4 0 0 0 0.010877 1 26257 26257 77.984 65.453 1 8917100 10836 10362 7445 7599 12499 12499 1687 -0.056751086424128516 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(78)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7735595703125 2 598.773874 1195.53319 -0.24693 -0.00014786 -1.381 -0.00082689 -1.6279 -0.00097475 598.7735896613489 48.312 0.24131 48.312 48.132 48.373 0 27 11 3 0 0 0 0.010877 1 26498 26498 77.984 65.453 1 5937700 10837 10362 7445 7599 12500 12500 1687 -0.056751086424128516 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(89)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2748413085938 2 598.773874 1195.53319 0.52118 0.00031207 -1.3982 -0.00083722 -0.87704 -0.00052515 598.7727514840386 48.238 0.24951 47.886 47.79 48.04 -0.3526 20 12 2 0 0 0 0.0086179 1 25871 25871 89.427 68.973 1 6503800 10838 10362 7445 7599 12501 12501 1687 -0.056751086424128516 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(78)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7733154296875 2 598.773874 1195.53319 0.40392 0.00024186 -2.0694 -0.0012391 -1.6654 -0.00099721 598.773238500899 48.605 0.19644 48.233 48.081 48.278 -0.37172 20 9 3 0 0 0 0.010877 1 26063 26063 77.984 59.849 1 7284300 10839 10362 7445 7599 12502 12502 1687 -0.056751086424128516 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(78)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7694091796875 2 598.773874 1195.53319 0.64612 0.00038688 -0.83504 -0.0005 -0.18892 -0.00011312 598.7727689647926 53.687 0.36373 47.883 47.745 48.109 -5.8042 50 23 3 0 0 0 0.010877 2 33907 33907;34039 77.984 61.042 1 27355000 10840 10362 7445 7599 12503;12504 12503 1687 -0.056751086424128516 EYMLQNHVF 9 Oxidation (M) _EYM(Oxidation (M))LQNHVF_ EYM(1)LQNHVF EYM(78)LQNHVF 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.775634765625 2 598.773874 1195.53319 0.68039 0.0004074 1.1066 0.00066261 1.787 0.00107 598.7749744316983 54.126 0.33489 48.261 48.066 48.401 -5.8653 30 18 2 0 0 0 0.010877 1 34214 34214 77.984 58.727 1 19870000 10841 10362 7445 7599 12505 12505 1687 -0.056751086424128516 EYMLQNHVF 9 Unmodified _EYMLQNHVF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7754516601562 2 590.776416 1179.53828 0.79386 0.00046899 -0.71151 -0.00042034 0.082353 4.8652E-05 590.7760039977316 61.797 0.47588 55.622 55.367 55.843 -6.1757 48 24 3 0 0 0 0.0067112 2 39794 39794;39929 112.59 92.179 1 52743000 10842 10362 7445 7600 12506;12507 12506 -0.04430804779804021 EYMLQNHVF 9 Unmodified _EYMLQNHVF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 590.776416 1179.53828 -0.2346 -0.0001386 1.2152 0.0007179 0.98057 0.0005793 591.2780095654383 55.947 0.1797 55.469 55.34 55.52 -0.47798 -0.076265 0.0021986 NaN 112.59 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1774000 10843 10362 7445 7600 -0.04430804779804021 EYMMHDFP 8 Unmodified _EYMMHDFP_ 0 0 0 REV__ENSG00000088808|ENST00000202556|PPP1R13B REV__ENSG00000088808|ENST00000202556|PPP1R13B MSMS AL20221201_MKP_PDAC_01 4 535.208984375 2 535.209521 1068.40449 NaN NaN NaN NaN NaN NaN NaN 67.723 1 61.547 61.047 62.047 -6.1757 0 0 0 0.95607 1 44139 44139 9.3474 1.4373 1 + 10844 17810 7446 7601 12508 12508 -0.12697786876992723 EYMPIKLKI 9 Unmodified _EYMPIKLKI_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8909912109375 3 378.891227 1133.65185 1.5492 0.00058697 0.10934 4.1428E-05 1.6585 0.00062839 378.89105790064536 81.218 0.61634 75.042 74.827 75.443 -6.1757 83 35 3 0 0 0 0.18144 3 53361 53230;53361;53514 24.991 16.835 1 27831000 10845 5180 7447 7602 12509;12510;12511 12510 0.09037290333230885 EYMQAQLLL 9 Oxidation (M) _EYM(Oxidation (M))QAQLLL_ EYM(1)QAQLLL EYM(61)QAQLLL 0 0 1 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.786865234375 2 562.78645 1123.55835 0.4779 0.00026896 0.057966 3.2623E-05 0.53587 0.00030158 562.7865054772891 67.925 0.56329 67.925 67.621 68.184 0 80 27 4 0 0 0 0.022193 2 37908 37802;37908 61.357 23.405 1 14190000 10846 981 7448 7603 12512;12513 12513 158 0.0015094616016995133 EYMQAQLLL 9 Oxidation (M) _EYM(Oxidation (M))QAQLLL_ EYM(1)QAQLLL EYM(68)QAQLLL 0 0 1 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.786865234375 2 562.78645 1123.55835 0.6438 0.00036232 -0.24767 -0.00013938 0.39613 0.00022294 562.786203741268 68.41 0.33192 67.929 67.764 68.096 -0.48071 45 14 4 0 0 0 0.015445 1 37368 37368 68.081 28.123 1 4841400 10847 981 7448 7603 12514 12514 158 0.0015094616016995133 EYMQAQLLL 9 Oxidation (M) _EYM(Oxidation (M))QAQLLL_ EYM(1)QAQLLL EYM(72)QAQLLL 0 0 1 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7872314453125 2 562.78645 1123.55835 1.1264 0.00063394 2.1282 0.0011977 3.2546 0.0018317 562.7863391985264 73.919 0.9596 67.743 67.589 68.549 -6.1757 86 49 3 0 0 0 0.013041 4 48284 48284;48414;48540;48662 71.922 48.087 1 15518000 10848 981 7448 7603 12515;12516;12517;12518 12515 158 0.0015094616016995133 EYMQAQLLL 9 Unmodified _EYMQAQLLL_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7935180664062 2 554.788992 1107.56343 1.1771 0.00065304 1.8717 0.0010384 3.0488 0.0016914 554.790566415488 79.955 0.25967 79.465 79.354 79.614 -0.48932 24 9 3 0 0 0 0.05447 1 43787 43787 43.858 31.327 1 1730200 10849 981 7448 7604 12519 12519 0.013952500227787823 EYMQAQLLL 9 Unmodified _EYMQAQLLL_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.291259765625 2 554.788992 1107.56343 1.0585 0.00058723 0.20812 0.00011546 1.2666 0.0007027 554.7891171133404 87.325 0.52633 81.149 80.858 81.385 -6.1757 63 28 3 0 0 0 0.0090948 3 57506 57476;57506;57629 85.272 45.322 1 39884000 10850 981 7448 7604 12520;12521;12522 12521 0.013952500227787823 EYMQAQLLL 9 Unmodified _EYMQAQLLL_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 554.788992 1107.56343 0.4825 0.00026768 0.022563 1.2518E-05 0.50506 0.0002802 554.7893330387728 79.412 0.26212 79.412 79.326 79.588 0 -0.026713 -0.00073361 NaN 43.858 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 445420 10851 981 7448 7604 0.013952500227787823 EYMRNFSDL 9 Oxidation (M) _EYM(Oxidation (M))RNFSDL_ EYM(1)RNFSDL EYM(89)RNFSDL 0 0 1 nc|ENSG00000138032|O75688-5|PPM1B;ENST00000409486.6_1_2:44428329-44436483:+|nuORF;nc|ENSG00000138032|O75688-4|PPM1B;nc|ENSG00000138032|O75688-2|PPM1B;ENSG00000138032|ENST00000282412|PPM1B nc|ENSG00000138032|O75688-5|PPM1B nc|ENSG00000138032|O75688-5|PPM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7611694335938 2 595.760963 1189.50737 0.34777 0.00020719 -0.62748 -0.00037383 -0.27971 -0.00016664 595.7607440716536 38.923 0.4067 38.923 38.747 39.154 0 58 18 4 0 0 0 0.0086209 2 20905 20787;20905 89.401 42.572 1 11717000 10852 5006 7449 7605 12523;12524 12524 914 -0.07980002884687565 EYMRNFSDL 9 Unmodified _EYMRNFSDL_ 0 0 0 nc|ENSG00000138032|O75688-5|PPM1B;ENST00000409486.6_1_2:44428329-44436483:+|nuORF;nc|ENSG00000138032|O75688-4|PPM1B;nc|ENSG00000138032|O75688-2|PPM1B;ENSG00000138032|ENST00000282412|PPM1B nc|ENSG00000138032|O75688-5|PPM1B nc|ENSG00000138032|O75688-5|PPM1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.763916015625 2 587.763506 1173.51246 0.090471 5.3175E-05 0.13759 8.0871E-05 0.22806 0.00013405 587.7636586462512 56.107 0.35332 50.13 49.913 50.266 -5.9769 37 20 2 0 0 0 0.02676 1 35720 35720 70.332 41.25 1 44876000 10853 5006 7449 7606 12525 12525 -0.06735699022055996 EYMRYRMLF 9 Unmodified _EYMRYRMLF_ 0 0 0 REV__nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 REV__nc|ENSG00000178202|Q7Z4H8-3|POGLUT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8783264160156 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 3.7132 1 3.6412 3.1412 4.1412 -0.072029 0 0 0 0.86004 1 1830 1830 0.26902 0 1 + 10854 23028 7450 7607 12526 12526 -0.02601909835107108 EYMSFMNQF 9 2 Oxidation (M) _EYM(Oxidation (M))SFM(Oxidation (M))NQF_ EYM(1)SFM(1)NQF EYM(64)SFM(64)NQF 0 0 2 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7362670898438 2 614.736099 1227.45765 0.664 0.00040819 -0.34458 -0.00021183 0.31942 0.00019636 614.735969306351 49.918 0.29913 49.918 49.754 50.053 0 38 13 4 0 0 0 0.019303 1 27460 27460 64.236 55.491 1 8371500 10855 4867 7451 7608 12527 12527 883;884 -0.14698453885011986 EYMSFMNQF 9 2 Oxidation (M) _EYM(Oxidation (M))SFM(Oxidation (M))NQF_ EYM(1)SFM(1)NQF EYM(44)SFM(44)NQF 0 0 2 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.736572265625 2 614.736099 1227.45765 0.99287 0.00061035 -1.639 -0.0010075 -0.64612 -0.00039719 614.7354154148821 50.478 0.2859 50.065 49.95 50.236 -0.41351 31 13 3 0 0 0 0.052168 1 27164 27164 44.407 33.583 1 5346500 10856 4867 7451 7608 12528 12528 883;884 -0.14698453885011986 EYMSFMNQF 9 2 Oxidation (M) _EYM(Oxidation (M))SFM(Oxidation (M))NQF_ 0 0 2 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 614.736099 1227.45765 1.6676 0.0010251 -0.64606 -0.00039716 1.0215 0.00062796 614.7358309703612 50.133 0.18301 50.085 49.986 50.169 -0.048824 0.062125 0.00039531 NaN 64.236 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 798930 10857 4867 7451 7608 883;884 -0.14698453885011986 EYMSFMNQF 9 Oxidation (M) _EYM(Oxidation (M))SFMNQF_ EYM(1)SFMNQF EYM(42)SFM(-42)NQF 0 0 1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.73828125 2 606.738642 1211.46273 0.64881 0.00039366 -1.4851 -0.00090107 -0.8363 -0.00050742 606.737625415561 74.277 0.42198 68.101 67.922 68.344 -6.1757 32 21 2 0 0 0 0.026094 1 48570 48570 57.471 48.088 2 13413000 10858 4867 7451 7609 12529 12529 883;884 -0.13454150022403155 EYMSFMNQF 9 Unmodified _EYMSFMNQF_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.741943359375 2 598.741185 1195.46782 0.43926 0.000263 0.10557 6.3207E-05 0.54483 0.00032621 598.741406449449 88.694 0.57281 82.518 82.292 82.865 -6.1757 77 31 3 0 0 0 0.087258 3 58454 58454;58579;58704 36.044 26.697 1 24111000 10859 4867 7451 7610 12530;12531;12532 12530 -0.12209846159771587 EYNAFFYSL 9 Unmodified _EYNAFFYSL_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000491292.5_1_2:128018779-128018920:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.263916015625 2 577.263665 1152.51278 0.53547 0.0003091 0.46836 0.00027037 1.0038 0.00057947 577.2637935406195 89.554 0.41217 89.052 88.865 89.277 -0.50172 55 17 4 0 0 0 0.037253 1 48996 48996 65.235 50.397 1 5405100 10860 6962 7452 7611 12533 12533 -0.05737956030566238 EYNAFFYSL 9 Unmodified _EYNAFFYSL_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000491292.5_1_2:128018779-128018920:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2644653320312 2 577.263665 1152.51278 0.48863 0.00028207 0.272 0.00015702 0.76064 0.00043909 577.2638379090646 98.714 0.29846 92.538 92.338 92.637 -6.1757 42 22 3 0 0 0 0.098164 1 65505 65505 43.858 28.011 1 36072000 10861 6962 7452 7611 12534 12534 -0.05737956030566238 EYNAFFYSL 9 Unmodified _EYNAFFYSL_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000491292.5_1_2:128018779-128018920:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 577.263665 1152.51278 0.33098 0.00019106 0.70734 0.00040832 1.0383 0.00059939 577.2639636509493 89.027 0.26127 89.027 88.885 89.146 0 -0.012516 0.00016726 NaN 65.235 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 517520 10862 6962 7452 7611 -0.05737956030566238 EYNAQINSNLF 11 Unmodified _EYNAQINSNLF_ 0 0 0 nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.3128051757812 2 656.812042 1311.60953 -0.034668 -2.277E-05 0.54555 0.00035833 0.51089 0.00033556 656.8127848508301 63.063 0.30071 63.063 62.846 63.146 0 18 12 2 0 0 0 0.39949 1 35166 35166 21.537 11.463 1 1063900 10863 971 7453 7612 12535 12535 -0.03381013541434186 EYNEVANLF 9 Unmodified _EYNEVANLF_ 0 0 0 nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11 nc|ENSG00000111224|Q9NR21-5|PARP11 nc|ENSG00000111224|Q9NR21-5|PARP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7589721679688 2 549.758746 1097.50294 0.65088 0.00035783 0.23557 0.00012951 0.88646 0.00048734 549.7588587988628 73.083 0.37262 73.083 72.84 73.213 0 51 16 4 0 0 0 0.013041 2 40705 40601;40705 71.922 0 1 6798900 10864 2767 7454 7613 12536;12537 12537 -0.041911440359626795 EYNEVANLF 9 Unmodified _EYNEVANLF_ 0 0 0 nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11 nc|ENSG00000111224|Q9NR21-5|PARP11 nc|ENSG00000111224|Q9NR21-5|PARP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7606811523438 2 549.758746 1097.50294 0.79069 0.00043469 1.4274 0.00078474 2.2181 0.0012194 549.7593536286332 80.971 0.36067 74.795 74.566 74.927 -6.1757 33 19 2 0 0 0 0.044011 1 53055 53055 47.749 0 1 20233000 10865 2767 7454 7613 12538 12538 -0.041911440359626795 EYNGKIPRF 9 Unmodified _EYNGKIPRF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2018432617188 3 375.201341 1122.58219 0.012976 4.8686E-06 0.98585 0.00036989 0.99883 0.00037476 375.2016868676436 38.357 0.39228 38.07 37.847 38.239 -0.28687 53 17 4 0 0 0 0.042911 2 20150 20150;20258 43.772 32.973 1 5859800 10866 5073 7455 7614 12539;12540 12539 0.025805477088624684 EYNGKIPRF 9 Unmodified _EYNGKIPRF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.201341 1122.58219 0.064869 2.4339E-05 1.0695 0.00040128 1.1344 0.00042562 375.2016853941282 38.009 0.34303 38.009 37.786 38.129 0 -0.024834 0.00046158 NaN 43.772 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1332400 10867 5073 7455 7614 0.025805477088624684 EYNGKIPRF 9 Unmodified _EYNGKIPRF_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 375.201341 1122.58219 -0.026029 -9.7661E-06 -0.1187 -4.4535E-05 -0.14473 -5.4301E-05 375.2010372350581 38.005 0.33706 38.022 37.773 38.11 0.01704 -0.011838 -0.00087585 NaN 43.772 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1178700 10868 5073 7455 7614 0.025805477088624684 EYNILVNFF 9 Unmodified _EYNILVNFF_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7948608398438 2 579.795132 1157.57571 0.28204 0.00016352 -0.094231 -5.4635E-05 0.1878 0.00010889 579.7950663234474 101.03 0.11084 100.99 100.92 101.03 -0.04216 7 3 3 0 0 0 0.024882 1 56146 56146 58.679 34.658 1 32233000 10869 2083 7456 7615 12541 12541 0.0032260975747249176 EYNILVNFF 9 Unmodified _EYNILVNFF_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7960815429688 2 579.795132 1157.57571 0.78066 0.00045262 0.58375 0.00033846 1.3644 0.00079108 579.7953971008443 101.6 0.15222 95.423 95.351 95.503 -6.1757 22 7 4 0 0 0 0.024882 1 68181 68181 58.679 40.532 1 144870000 10870 2083 7456 7615 12542 12542 0.0032260975747249176 EYNKEFAEV 9 Unmodified _EYNKEFAEV_ 0 0 0 CUX1-BRAF|1|fusion;CUX1-BRAF|2|fusion;CUX1-BRAF|4|fusion;CUX1-BRAF|5|fusion;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-2|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-6|CUX1;ENST00000497815.5_1_7:101459310-101755188:+|nuORF;nc|ENSG00000257923|Q13948|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|P39880-3|CUX1 CUX1-BRAF|1|fusion CUX1-BRAF|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.766357421875 2 564.764029 1127.5135 0.77008 0.00043491 2.1035 0.001188 2.8736 0.0016229 564.7655585515745 36.652 0.18506 36.652 36.547 36.732 0 15 8 2 0 0 0 0.20507 1 19478 19478 30.637 6.616 1 2406900 10871 224 7457 7616 12543 12543 -0.0451516138155057 EYNLAVMKDF 10 Unmodified _EYNLAVMKDF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.2958984375 2 615.297181 1228.57981 0.11503 7.0777E-05 -2.9941 -0.0018423 -2.8791 -0.0017715 615.2953620252359 76.597 0.20186 76.118 76.053 76.255 -0.47945 14 12 2 0 0 0 0.67033 1 41946 41946 6.2058 1.8765 1 1041700 10872 8967 7458 7617 12544 12544 -0.025336688111337935 EYNNIFHTF 9 Unmodified _EYNNIFHTF_ 0 0 0 ENST00000545363.6_1_12:9808558-9809281:+|nuORF ENST00000545363.6_1_12:9808558-9809281:+|nuORF ENST00000545363.6_1_12:9808558-9809281:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7730712890625 2 592.772188 1183.52982 0.46356 0.00027478 -0.91845 -0.00054443 -0.45489 -0.00026965 592.7710254072014 63.752 0.2457 63.266 63.127 63.373 -0.48617 27 11 4 0 0 0 0.015445 1 34745 34745 68.081 49.946 1 5524400 10873 15090 7459 7618 12545 12545 -0.05460035424766829 EYNNIFHTF 9 Unmodified _EYNNIFHTF_ 0 0 0 ENST00000545363.6_1_12:9808558-9809281:+|nuORF ENST00000545363.6_1_12:9808558-9809281:+|nuORF ENST00000545363.6_1_12:9808558-9809281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7723388671875 2 592.772188 1183.52982 0.71575 0.00042427 2.309 0.0013687 3.0247 0.001793 592.7733452249893 68.761 0.40251 62.585 62.42 62.822 -6.1757 27 21 2 0 0 0 0.070838 1 44989 44989 39.957 26.915 1 15406000 10874 15090 7459 7618 12546 12546 -0.05460035424766829 EYNNIQHLF 9 Unmodified _EYNNIQHLF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2901000976562 2 589.285463 1176.55637 0.3825 0.0002254 0.44911 0.00026466 0.83162 0.00049006 589.2858869396777 57.099 0.31705 57.099 56.922 57.239 0 39 13 4 0 0 0 0.032796 2 31724 31724;31840 70.716 47.567 1 12638000 10875 7184 7460 7619 12547;12548 12547 -0.024843465334242865 EYNNIQHLF 9 Unmodified _EYNNIQHLF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7876586914062 2 589.285463 1176.55637 0.4019 0.00023684 -0.74329 -0.00043801 -0.34138 -0.00020117 589.2849405905613 57.597 0.32417 57.107 56.964 57.288 -0.48974 51 15 4 0 0 0 0.032796 2 31263 31263;31365 70.716 47.567 1 26679000 10876 7184 7460 7619 12549;12550 12549 -0.024843465334242865 EYNNNFHVL 9 Unmodified _EYNNNFHVL_ 0 0 0 ENST00000425988.1_1_13:23411483-23411888:-|nuORF;ENSG00000151151|ENST00000373935|IPMK ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2697143554688 2 575.269813 1148.52507 0.1653 9.5091E-05 -0.38644 -0.00022231 -0.22114 -0.00012722 575.2695357433992 48.977 0.41359 48.977 48.761 49.174 0 64 19 4 0 0 0 0.03327 1 26881 26881 53.576 30.427 1 94270000 10877 13173 7461 7620 12551 12551 -0.0432491956753438 EYNPQHSLL 9 Unmodified _EYNPQHSLL_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1;nc|ENSG00000170365|Q15797-2|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7723388671875 2 550.772188 1099.52982 -0.21896 -0.00012059 0.10862 5.9825E-05 -0.11033 -6.0769E-05 550.7723165081076 41.237 0.41705 41.237 41.024 41.441 0 78 20 5 0 0 0 0.013323 2 22272 22162;22272 71.134 42.647 1 69860000 10878 7976 7462 7621 12552;12553 12553 -0.015960354247454234 EYNPQHSLL 9 Unmodified _EYNPQHSLL_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1;nc|ENSG00000170365|Q15797-2|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.771484375 2 550.772188 1099.52982 -0.1541 -8.4876E-05 -0.47297 -0.0002605 -0.62708 -0.00034538 550.7721323638416 41.55 0.19688 41.247 41.09 41.287 -0.30304 18 8 3 0 0 0 0.022193 1 22006 22006 61.357 25.313 1 6832300 10879 7976 7462 7621 12554 12554 -0.015960354247454234 EYNPQHSLL 9 Unmodified _EYNPQHSLL_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1;nc|ENSG00000170365|Q15797-2|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.772705078125 2 550.772188 1099.52982 0.40563 0.00022341 -0.69746 -0.00038414 -0.29183 -0.00016073 550.7719488624798 46.487 0.41156 41.407 41.1 41.512 -5.0805 106 40 4 0 0 0 0.010611 1 28719 28719 78.728 38.771 1 139510000 10880 7976 7462 7621 12555 12555 -0.015960354247454234 EYNPYSWNL 9 Unmodified _EYNPYSWNL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2632446289062 2 593.264196 1184.51384 0.50907 0.00030202 -1.7402 -0.0010324 -1.2311 -0.00073038 593.2628131367513 80.839 0.39463 74.663 74.498 74.892 -6.1757 27 21 2 0 0 0 0.19127 1 52987 52987 24.021 12.38 1 16027000 10881 878 7463 7622 12556 12556 -0.07103741661671847 EYNSAHLPQGA 11 Unmodified _EYNSAHLPQGA_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.29248046875 2 593.778002 1185.54145 0.03224 1.9144E-05 -0.9607 -0.00057044 -0.92846 -0.0005513 593.7777682552666 47.06 0.23016 47.06 46.941 47.171 0 34 10 4 0 0 0 0.29297 1 25687 25687 11.495 4.2055 1 12982000 + 10882 17961 7464 7623 12557 12557 -0.04389838401448287 EYNSALPLL 9 Unmodified _EYNSALPLL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2738647460938 2 510.274032 1018.53351 0.32054 0.00016356 0.027757 1.4164E-05 0.3483 0.00017773 510.27392492583283 80.713 0.46548 80.713 80.472 80.937 0 66 21 4 0 0 0 0.010818 2 44774 44774;44878 78.149 35.181 1 4529500 10883 3410 7465 7624 12558;12559 12558 0.02498634349092299 EYNSALPLL 9 Unmodified _EYNSALPLL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2728576660156 2 510.274032 1018.53351 1.0028 0.0005117 -0.84054 -0.00042891 0.16226 8.2796E-05 510.27361060597883 88.449 0.57331 82.274 81.939 82.512 -6.1757 59 31 2 0 0 0 0.015445 2 58226 58226;58354 68.081 33.893 1 28632000 10884 3410 7465 7624 12560;12561 12560 0.02498634349092299 EYNSALPLL 9 Unmodified _EYNSALPLL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 510.274032 1018.53351 0.91116 0.00046494 3.6336 0.0018541 4.5448 0.0023191 510.7763932825928 87.04 0.086555 80.865 80.825 80.911 -6.1757 0.076029 0.0035953 NaN 78.149 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4137100 10885 3410 7465 7624 0.02498634349092299 EYNSDLHQF 9 Unmodified _EYNSDLHQF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7509155273438 2 576.751453 1151.48835 0.60512 0.00034901 -1.0158 -0.00058589 -0.41071 -0.00023688 576.7508417131035 36.238 0.29683 36.238 36.053 36.35 0 46 14 4 0 0 0 0.0082485 2 19153 19153;19260 96.285 62.182 1 82446000 10886 7898 7466 7625 12562;12563 12562 -0.08133216184091907 EYNSDLHQF 9 Unmodified _EYNSDLHQF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.752685546875 2 576.751453 1151.48835 0.70581 0.00040708 1.5455 0.00089139 2.2513 0.0012985 576.7515038480392 41.184 0.53934 36.576 36.278 36.817 -4.6079 111 33 4 0 0 0 0.0085164 3 24825 24546;24682;24825 99.799 72.915 1 136770000 10887 7898 7466 7625 12564;12565;12566 12566 -0.08133216184091907 EYNSDLHQFF 10 Unmodified _EYNSDLHQFF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.787353515625 2 650.28566 1298.55677 0.11581 7.5306E-05 0.4225 0.00027475 0.53831 0.00035006 650.2860285653196 60.014 0.23422 59.523 59.372 59.607 -0.49079 18 11 2 0 0 0 0.69064 1 32624 32624 3.9444 0 1 3344900 10888 7898 7467 7626 12567 12567 -0.08056971604264618 EYNSDLHQFF 10 Unmodified _EYNSDLHQFF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 650.28566 1298.55677 0.13013 8.4619E-05 -1.2266 -0.00079766 -1.0965 -0.00071304 650.2855838637415 59.39 0.15814 59.39 59.307 59.465 0 -0.066563 -0.0017442 NaN 3.9444 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1348000 10889 7898 7467 7626 -0.08056971604264618 EYNSMAAAFF 10 Unmodified _EYNSMAAAFF_ 0 0 0 nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000563642.6_1_16:1500458-1501741:-|nuORF nc|ENSG00000103249|P51798-2|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7477416992188 2 575.747324 1149.4801 1.0599 0.00061021 0.95008 0.00054701 2.0099 0.0011572 575.7475910290057 88.763 0.4078 82.588 82.407 82.815 -6.1757 30 22 2 0 0 0 0.41822 1 58542 58542 24.021 4.7636 1 13119000 10890 2118 7468 7627 12568 12568 -0.08866486425085895 EYNTQFAFFL 10 Unmodified _EYNTQFAFFL_ 0 0 0 REV__ENST00000521628.1_1_8:48962382-48973385:+|nuORF REV__ENST00000521628.1_1_8:48962382-48973385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2049865722656 3 427.20464 1278.59209 0.00028217 1.2055E-07 0.88858 0.00037961 0.88886 0.00037973 427.20497806005216 38.407 0.23639 38.12 38.003 38.239 -0.28687 19 10 2 0 0 0 0.69377 1 20223 20223 3.5871 2.8894 1 1925200 + 10891 28290 7469 7628 12569 12569 -0.03606309076440084 EYNTVASKF 9 Unmodified _EYNTVASKF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7626342773438 2 529.761289 1057.50803 0.33361 0.00017673 -0.6037 -0.00031982 -0.27009 -0.00014308 529.7612433869505 35.869 0.30146 35.869 35.674 35.975 0 46 14 4 0 0 0 0.0094097 2 18926 18926;19037 82.529 56.188 1 204660000 10892 8296;16388 7470 7629 12570;12571 12570 -0.018428401733444844 EYNTVASKF 9 Unmodified _EYNTVASKF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7618408203125 2 529.761289 1057.50803 0.57323 0.00030367 -0.39947 -0.00021162 0.17376 9.2049E-05 529.760927791342 40.484 0.64622 35.955 35.582 36.228 -4.5294 114 44 4 0 0 0 0.0094097 2 24247 24117;24247 82.529 51.893 1 301790000 10893 8296;16388 7470 7629 12572;12573 12573 -0.018428401733444844 EYNVLLETL 9 Unmodified _EYNVLLETL_ 0 0 0 ENST00000515119.5_1_4:3517776-3534065:-|nuORF;LRPAP1|p.E303Gfs*13|1|0.33|ENSG00000163956|chr4:3514849-3514855|AGCTTCT/-|frameshift_variant;ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1 ENST00000515119.5_1_4:3517776-3534065:-|nuORF ENST00000515119.5_1_4:3517776-3534065:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2911987304688 2 547.292422 1092.57029 NaN NaN NaN NaN NaN NaN NaN 86.38 1 86.38 85.88 86.88 0 0 0 0 0.76439 1 47848 47848 7.2892 2.5332 1 10894 7106 7471 7630 12574 12574 0.0277088617501704 EYNWFYTYNIW 11 Unmodified _EYNWFYTYNIW_ 0 0 0 REV__ENSG00000165899|ENST00000547103|OTOGL REV__ENSG00000165899|ENST00000547103|OTOGL MSMS AL20221201_MKP_PDAC_01 4 799.853515625 2 799.851167 1597.68778 NaN NaN NaN NaN NaN NaN NaN 75.741 1 69.565 69.065 70.065 -6.1757 0 0 0 0.94165 1 49540 49540 1.3295 1.0225 1 + 10895 22060 7472 7631 12575 12575 -0.08715580956186386 EYPAWFEQF 9 Unmodified _EYPAWFEQF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7684326171875 2 608.769114 1215.52368 NaN NaN NaN NaN NaN NaN NaN 91.664 1 91.183 90.683 91.683 -0.48092 0 0 0 0.84369 1 50104 50104 2.3027 0 1 10896 10134 7473 7632 12576 12576 -0.07546553656311517 EYPDLFEWF 9 Unmodified _EYPDLFEWF_ 0 0 0 nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-3|CRELD2;nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;ENSG00000184164|ENST00000328268|CRELD2;nc|ENSG00000184164|Q6UXH1-5|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.2755737304688 2 623.276772 1244.53899 0.57093 0.00035585 -0.74676 -0.00046544 -0.17583 -0.00010959 623.2762512471916 102.04 0.08403 95.861 95.814 95.898 -6.1757 8 3 3 0 0 0 0.10247 1 68497 68497 44.407 33.608 1 5090900 10897 14133 7474 7633 12577 12577 -0.07349686859083704 EYPDRIMNTF 10 Oxidation (M) _EYPDRIM(Oxidation (M))NTF_ EYPDRIM(1)NTF EYPDRIM(42)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.6426391601562 2 651.29517 1300.57579 -0.45521 -0.00029648 0.33314 0.00021697 -0.12207 -7.9507E-05 651.2956374356975 44.994 0.36292 44.994 44.906 45.269 0 28 18 2 0 0 0 0.13297 1 24457 24457 41.956 25.013 1 4857200 10898 9643;9783;4920;10820;14685 7475 7634 12578 12578 895 -0.06247758304857598 EYPDRIMNTF 10 Oxidation (M) _EYPDRIM(Oxidation (M))NTF_ EYPDRIM(1)NTF EYPDRIM(86)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.295166015625 2 651.29517 1300.57579 0.13149 8.5636E-05 -0.68667 -0.00044722 -0.55518 -0.00036159 651.2949244820222 43.411 0.51688 43.1 42.842 43.359 -0.31039 104 24 6 0 0 0 0.01074 3 23008 23008;23117;23227 86.332 63.183 1 733770000 10899 9643;9783;4920;10820;14685 7475 7634 12579;12580;12581 12579 895 -0.06247758304857598 EYPDRIMNTF 10 Oxidation (M) _EYPDRIM(Oxidation (M))NTF_ EYPDRIM(1)NTF EYPDRIM(90)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.2959594726562 2 651.29517 1300.57579 0.82907 0.00053997 -1.0355 -0.00067442 -0.20644 -0.00013445 651.2946670274362 43.09 0.42361 43.075 42.843 43.266 -0.015667 65 19 4 0 0 0 0.0086576 2 23014 23014;23113 90.135 62.506 1 65648000 10900 9643;9783;4920;10820;14685 7475 7634 12582;12583 12582 895 -0.06247758304857598 EYPDRIMNTF 10 Oxidation (M) _EYPDRIM(Oxidation (M))NTF_ EYPDRIM(1)NTF EYPDRIM(100)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.294921875 2 651.29517 1300.57579 0.65626 0.00042742 -0.54644 -0.0003559 0.10982 7.1525E-05 651.2949896805553 49.125 1.7634 43.729 43.337 45.1 -5.3961 340 113 5 0 0 0 0.0032515 10 30448 30448;30573;30712;30836;30970;31105;31239;31382;31536;31680 103.82 79.803 1 3498299999.9999995 10901 9643;9783;4920;10820;14685 7475 7634 12584;12585;12586;12587;12588;12589;12590;12591;12592;12593 12584 895 -0.06247758304857598 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.2976684570312 2 643.297713 1284.58087 -0.49201 -0.00031651 -0.73037 -0.00046985 -1.2224 -0.00078636 643.2976696515682 55.241 0.63204 55.241 54.92 55.552 0 94 27 5 0 0 0 0.0044938 3 30650 30553;30650;30753 100.09 67.305 1 175910000 10902 9643;9783;4920;10820;14685 7475 7635 12594;12595;12596 12595 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.298095703125 2 643.297713 1284.58087 -0.28534 -0.00018356 -0.68924 -0.00044339 -0.97458 -0.00062695 643.2974232839232 55.867 0.57264 55.389 55.069 55.642 -0.47798 130 27 6 0 0 0 6.7445E-07 3 30203 30203;30307;30412 133.05 89.28 1 356260000 10903 9643;9783;4920;10820;14685 7475 7635 12597;12598;12599 12597 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.297607421875 2 643.297713 1284.58087 0.029504 1.898E-05 -1.1072 -0.00071227 -1.0777 -0.00069329 643.2970951365779 55.504 0.3483 55.435 55.258 55.607 -0.068741 54 17 4 0 0 0 0.0044938 2 30208 30110;30208 100.09 67.305 1 32026000 10904 9643;9783;4920;10820;14685 7475 7635 12600;12601 12601 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.298828125 2 643.297713 1284.58087 0.39317 0.00025292 -0.77642 -0.00049947 -0.38326 -0.00024655 643.2972462277847 62.134 1.1824 55.958 55.576 56.759 -6.1757 300 63 6 0 0 0 5.8871E-08 6 39840 39840;39963;40097;40221;40355;40486 143.21 102.97 1 7359899999.999999 10905 9643;9783;4920;10820;14685 7475 7635 12602;12603;12604;12605;12606;12607 12602 -0.050034544422260296 EYPDRIMNTF 10 Unmodified _EYPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MSMS AL20221201_MKP_PDAC_01 4 643.2952270507812 2 643.297713 1284.58087 NaN NaN NaN NaN NaN NaN NaN 63.362 1 57.187 56.687 57.687 -6.1757 0 0 0 0.042083 1 40950 40950 59.368 36.632 1 10906 9643;9783;4920;10820;14685 7475 7635 12608 12608 -0.050034544422260296 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2847900390625 2 555.284931 1108.55531 0.37824 0.00021003 -0.91518 -0.00050818 -0.53694 -0.00029815 555.2842270965375 61.861 0.45197 61.861 61.62 62.072 0 37 19 2 0 0 0 0.07916 1 34438 34438 37.974 17.52 1 16384000 10907 12950 7476 7636 12609 12609 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2858276367188 2 555.284931 1108.55531 0.91604 0.00050866 -0.078863 -4.3791E-05 0.83718 0.00046487 555.2846416761189 62.34 0.75362 61.852 61.489 62.243 -0.48764 133 35 6 0 0 0 0.031062 2 33866 33866;33971 54.774 23.136 1 34210000 10908 12950 7476 7636 12610;12611 12610 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2855834960938 2 555.284931 1108.55531 0.84532 0.00046939 0.34369 0.00019085 1.189 0.00066024 555.2851099764262 68.384 0.64153 62.209 61.992 62.633 -6.1757 59 37 2 0 0 0 0.07916 1 44604 44604 37.974 13.3 1 21526000 10909 12950 7476 7636 12612 12612 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.2852783203125 2 555.284931 1108.55531 NaN NaN NaN NaN NaN NaN NaN 67.738 1 61.562 61.062 62.062 -6.1757 0 0 0 0.08978 1 44149 44149 46.021 11.919 1 10910 12950 7476 7636 12613 12613 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.2842407226562 2 555.284931 1108.55531 NaN NaN NaN NaN NaN NaN NaN 67.946 1 61.77 61.27 62.27 -6.1757 0 0 0 0.028486 1 44309 44309 68.081 33.978 1 10911 12950 7476 7636 12614 12614 0.0053743909768400044 EYPELRGVF 9 Unmodified _EYPELRGVF_ 0 0 0 ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF ENST00000409011.5_2_2:39005336-39005417:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.284931 1108.55531 0.45992 0.00025539 0.79796 0.0004431 1.2579 0.00069849 555.2855275750642 61.964 0.27377 61.931 61.808 62.082 -0.032787 -0.032112 0.001144 NaN 54.774 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1858900 10912 12950 7476 7636 0.0053743909768400044 EYPGVYQQF 9 Unmodified _EYPGVYQQF_ 0 0 0 REV__nc|ENSG00000115705|P07202-6|TPO REV__nc|ENSG00000115705|P07202-6|TPO MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7614135742188 2 565.761289 1129.50803 1.1598 0.00065619 -0.96933 -0.00054841 0.19051 0.00010779 565.7607916062557 74.808 0.43576 68.632 68.454 68.89 -6.1757 46 22 3 0 0 0 0.07916 2 48876 48876;49006 37.974 11.633 1 22371000 + 10913 19004 7477 7637 12615;12616 12615 -0.051548401733498395 EYPHEVPQI 9 Unmodified _EYPHEVPQI_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2698364257812 2 556.274564 1110.53457 -0.0029848 -1.6604E-06 -2.5268 -0.0014056 -2.5298 -0.0014072 556.2727764363647 44.994 0.24549 44.994 44.887 45.132 0 26 12 3 0 0 0 0.009483 1 24513 24513 81.89 55.007 1 15406000 10914 6999 7478 7638 12617 12617 -0.01627151281991246 EYPHIVTKL 9 Unmodified _EYPHIVTKL_ 0 0 0 ENSG00000113273|ENST00000264914|ARSB;ENST00000521011.1_1_5:78076222-78079308:-|nuORF ENSG00000113273|ENST00000264914|ARSB ENSG00000113273|ENST00000264914|ARSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.2094116210938 3 367.209725 1098.60735 NaN NaN NaN NaN NaN NaN NaN 44.16 1 44.16 43.66 44.66 0 0 0 0 0.41144 1 24018 24018 14.218 5.4728 1 10915 2953 7479 7639 12618 12618 0.06198602511426543 EYPKFLKRF 9 Unmodified _EYPKFLKRF_ 0 0 0 nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.9026794433594 3 409.901003 1226.68118 0.31684 0.00012987 0.22255 9.1225E-05 0.53939 0.0002211 409.90116990386724 42.726 0.51875 42.717 42.4 42.919 -0.0088196 64 23 4 0 0 0 0.03568 2 22796 22796;22896 55.503 40.254 1 23634000 10916 16129 7480 7640 12619;12620 12619 0.0769057067373069 EYPKFLKRF 9 Unmodified _EYPKFLKRF_ 0 0 0 nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.9017333984375 3 409.901003 1226.68118 1.204 0.00049352 0.13152 5.391E-05 1.3355 0.00054743 409.9009047732366 81.514 1.1325 75.339 74.75 75.883 -6.1757 110 64 2 0 0 0 0.010818 5 53673 53248;53379;53402;53540;53673 70.332 54.183 1 23395000 10917 16129 7480 7640 12621;12622;12623;12624;12625 12625 0.0769057067373069 EYPKLRELI 9 Unmodified _EYPKLRELI_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5606994628906 3 387.560646 1159.66011 0.48027 0.00018613 0.1366 5.2941E-05 0.61687 0.00023907 387.5605549815449 53.58 0.29766 53.129 52.963 53.261 -0.45173 30 14 3 0 0 0 0.31356 1 29015 29015 16.566 10.782 1 2497100 10918 5692 7481 7641 12626 12626 0.08666560574238247 EYPKLRELI 9 Unmodified _EYPKLRELI_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 387.560646 1159.66011 0.27856 0.00010796 0.8384 0.00032493 1.117 0.00043289 387.5610629590383 53.137 0.19154 53.137 53.003 53.195 0 0.0042706 0.00056702 NaN 16.566 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1410700 10919 5692 7481 7641 0.08666560574238247 EYPLSCFALF 10 Carbamidomethyl (C) _EYPLSC(Carbamidomethyl (C))FALF_ EYPLSC(1)FALF EYPLSC(89)FALF 0 1 0 ENSG00000124641|ENST00000265350|MED20;nc|ENSG00000288721|Q9H944-2|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2996826171875 2 623.794275 1245.574 0.84449 0.00052679 0.37733 0.00023537 1.2218 0.00076216 623.7950483083208 101.25 0.10673 95.077 95.018 95.125 -6.1757 18 6 4 0 0 0 0.0093317 1 67898 67898 88.904 64.883 1 49179000 10920 3809 7482 7642 12627 12627 386 -0.03896767322794403 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2977905273438 2 531.297507 1060.58046 0.34592 0.00018379 0.60495 0.00032141 0.95087 0.00050519 531.2978805171044 81.321 0.53019 81.321 81.046 81.576 0 74 24 4 0 0 0 0.0082281 2 45136 45136;45236 92.822 56.778 1 4660400 10921 8370 7483 7643 12628;12629 12628 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2978515625 2 531.297507 1060.58046 0.63073 0.00033511 0.39407 0.00020937 1.0248 0.00054448 531.2977450917604 81.862 0.58784 81.367 81.062 81.65 -0.4952 67 22 4 0 0 0 0.0041763 3 44820 44714;44820;44921 120.45 80.493 1 4590900 10922 8370 7483 7643 12630;12631;12632 12631 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1061.587768554688 1 1061.58774 1060.58046 0.57142 0.00060661 0.14087 0.00014955 0.71229 0.00075616 1061.5876114898676 81.897 0.36453 81.402 81.163 81.528 -0.4952 20 13 2 0 0 0 0.23158 1 44876 44876 20.454 8.8133 1 784440 10923 8370 7483 7643 12633 12633 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MSMS AL20221201_MKP_PDAC_01 4 531.2984619140625 2 531.297507 1060.58046 NaN NaN NaN NaN NaN NaN NaN 89.038 1 82.862 82.362 83.362 -6.1757 0 0 0 0.01764 1 58765 58765 81.613 53.126 1 10924 8370 7483 7643 12634 12634 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MSMS AL20221201_MKP_PDAC_01 4 531.2984008789062 2 531.297507 1060.58046 NaN NaN NaN NaN NaN NaN NaN 89.232 1 83.057 82.557 83.557 -6.1757 0 0 0 0.012652 1 58898 58898 108 68.04 1 10925 8370 7483 7643 12635 12635 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MSMS AL20221201_MKP_PDAC_01 4 531.2979736328125 2 531.297507 1060.58046 NaN NaN NaN NaN NaN NaN NaN 89.433 1 83.257 82.757 83.757 -6.1757 0 0 0 0.01764 1 59036 59036 81.613 49.308 1 10926 8370 7483 7643 12636 12636 0.05259493900257439 EYPLVINTL 9 Unmodified _EYPLVINTL_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1061.58774 1060.58046 -0.4262 -0.00045245 1.5189 0.0016125 1.0927 0.00116 1061.5897594329208 81.385 0.39563 81.385 81.143 81.539 0 -0.0081804 0.00051142 NaN 20.454 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 830390 10927 8370 7483 7643 0.05259493900257439 EYPMQQWRL 9 Unmodified _EYPMQQWRL_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.5390625 3 417.537736 1249.59138 -0.0070078 -2.926E-06 0.67111 0.00028021 0.6641 0.00027729 417.53789349989114 31.559 0.24055 31.559 31.379 31.619 0 17 11 2 0 0 0 0.58865 1 16381 16381 1.0715 0.29493 1 1250700 10928 1447 7484 7644 12637 12637 -0.02343426997140341 EYPPLFLAVS 10 Unmodified _EYPPLFLAVS_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2109680175781 3 379.20598 1134.59611 1.0176 0.00038589 0.87693 0.00033254 1.8945 0.00071842 379.2061637992619 29.949 0.54342 26.647 26.37 26.913 -3.3016 91 26 5 0 0 0 0.42068 1 16740 16740 12.873 0 1 284980000 10929 8429 7485 7645 12638 12638 0.034197804172890756 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2723388671875 2 588.272021 1174.52949 0.79813 0.00046951 0.045711 2.6891E-05 0.84384 0.00049641 588.2722803419176 54.592 0.37051 54.592 54.419 54.79 0 49 15 4 0 0 0 0.014417 2 30360 30261;30360 69.105 42.221 1 10150000 10930 6912 7486 7646 12639;12640 12640 -0.050794551446415426 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2723999023438 2 588.272021 1174.52949 0.27578 0.00016224 0.29874 0.00017574 0.57453 0.00033798 588.2721393028589 55.197 0.33528 54.719 54.548 54.883 -0.47798 41 15 4 0 0 0 0.011968 1 29987 29987 74.929 51.781 1 6128000 10931 6912 7486 7646 12641 12641 -0.050794551446415426 EYPRETFSF 9 Unmodified _EYPRETFSF_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.271728515625 2 588.272021 1174.52949 1.0406 0.00061214 -0.046799 -2.7531E-05 0.99378 0.00058461 588.2721012560582 60.711 0.5219 54.563 54.324 54.846 -6.1478 57 27 3 0 0 0 0.23158 1 39258 39258 20.454 3.5113 1 60649000 10932 6912 7486 7646 12642 12642 -0.050794551446415426 EYPSQFKI 8 Unmodified _EYPSQFKI_ 0 0 0 REV__ENSG00000173905|ENST00000470487|GOLIM4 REV__ENSG00000173905|ENST00000470487|GOLIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2622680664062 2 506.260925 1010.5073 0.72631 0.0003677 -1.5923 -0.00080613 -0.86602 -0.00043843 506.26163543491174 54.721 0.47762 48.856 48.656 49.134 -5.8653 74 29 4 0 0 0 0.48669 1 34739 34739 36.044 7.5574 1 48877000 + 10933 22758 7487 7647 12643 12643 0.0024636517761109644 EYPTERFGFL 10 Unmodified _EYPTERFGFL_ 0 0 0 ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.812255859375 2 629.808771 1257.60299 -0.15047 -9.477E-05 0.41098 0.00025884 0.26051 0.00016407 629.8090238301538 69.192 0.57517 68.712 68.465 69.04 -0.48071 99 24 6 0 0 0 0.24625 1 37752 37752 30.637 11.38 1 188930000 10934 14692 7488 7648 12644 12644 -0.015509067021412193 EYPTERFGFL 10 Unmodified _EYPTERFGFL_ 0 0 0 ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8087158203125 2 629.808771 1257.60299 0.96657 0.00060876 -0.15981 -0.00010065 0.80677 0.00050811 629.8085428387235 64.256 0.338 64.246 64.077 64.415 -0.010529 51 16 4 0 0 0 0.16524 1 35134 35134 37.974 1.847 1 22549000 10935 14692 7488 7648 12645 12645 -0.015509067021412193 EYPTERFGFL 10 Unmodified _EYPTERFGFL_ 0 0 0 ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF ENST00000518547.5_2_8:125740268-125740424:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.80810546875 2 629.808771 1257.60299 0.35329 0.0002225 0.034571 2.1773E-05 0.38786 0.00024428 629.8086938772987 78.359 2.0321 72.183 71.17 73.202 -6.1757 343 118 4 0 0 0 0.24625 6 50692 50692;50950;51206;51333;51466;51859 30.637 6.616 1 130200000 10936 14692 7488 7648 12646;12647;12648;12649;12650;12651 12646 -0.015509067021412193 EYPTLHVVL 9 Unmodified _EYPTLHVVL_ 0 0 0 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7991333007812 2 535.797675 1069.5808 0.14906 7.9866E-05 0.96495 0.00051702 1.114 0.00059689 536.2993601777557 68.942 0.36252 68.461 68.264 68.627 -0.48071 20 15 2 0 0 0 0.37804 1 37667 37667 13.508 4.9146 1 760370 10937 3287 7489 7649 12652 12652 0.04878913620109415 EYPVSIKYN 9 Unmodified _EYPVSIKYN_ 0 0 0 REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34 REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7816772460938 2 556.784764 1111.55498 0.95622 0.00053241 -2.5559 -0.0014231 -1.5997 -0.00089068 556.7804998175145 81.41 0.56918 80.917 80.695 81.264 -0.49247 54 21 4 0 0 0 0.32871 1 44596 44596 15.847 0.5987 1 2440900 + 10938 21378 7490 7650 12653 12653 0.003660193778159737 EYQAREQLR 9 Unmodified _EYQAREQLR_ 0 0 0 ENSG00000125457|ENST00000325102|MIF4GD;nc|ENSG00000125457|A9UHW6-2|MIF4GD;nc|ENSG00000125457|A9UHW6-3|MIF4GD ENSG00000125457|ENST00000325102|MIF4GD ENSG00000125457|ENST00000325102|MIF4GD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3093872070312 2 596.807094 1191.59963 0.34903 0.0002083 -2.0799 -0.0012413 -1.7309 -0.001033 596.8051103591885 58.792 0.3627 58.301 58.111 58.474 -0.49079 28 17 2 0 0 0 0.25681 1 31908 31908 19.257 5.3509 1 3028300 10939 3854 7491 7651 12654 12654 0.011498432438429518 EYQARIPEF 9 Unmodified _EYQARIPEF_ 0 0 0 nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3;ENST00000472734.1_1_1:211433019-211434404:+|nuORF;ENST00000528408.5_1_1:211432902-211444674:+|nuORF nc|ENSG00000117625|Q9P2K3-2|RCOR3 nc|ENSG00000117625|Q9P2K3-2|RCOR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7899780273438 2 576.787838 1151.56112 1.0578 0.00061014 0.7186 0.00041448 1.7764 0.0010246 576.7883622080923 54.58 0.2794 54.58 54.462 54.741 0 35 11 4 0 0 0 0.0086209 1 30309 30309 89.401 39.468 1 3757200 10940 3328 7492 7652 12655 12655 -0.008594623906901688 EYQARIPEF 9 Unmodified _EYQARIPEF_ 0 0 0 nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3;ENST00000472734.1_1_1:211433019-211434404:+|nuORF;ENST00000528408.5_1_1:211432902-211444674:+|nuORF nc|ENSG00000117625|Q9P2K3-2|RCOR3 nc|ENSG00000117625|Q9P2K3-2|RCOR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7898559570312 2 576.787838 1151.56112 0.42593 0.00024567 2.6164 0.0015091 3.0423 0.0017548 576.7890984878923 55.179 0.21202 54.701 54.629 54.841 -0.47798 24 9 3 0 0 0 0.017075 1 29941 29941 66.457 24.617 1 2398900 10941 3328 7492 7652 12656 12656 -0.008594623906901688 EYQEALIAL 9 Unmodified _EYQEALIAL_ 0 0 0 REV__ENSG00000135090|ENST00000392533|TAOK3 REV__ENSG00000135090|ENST00000392533|TAOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.27490234375 2 525.279315 1048.54408 0.22168 0.00011645 -3.8969 -0.002047 -3.6752 -0.0019305 525.2769978554545 26.171 0.51794 23.22 22.941 23.459 -2.9511 62 30 3 0 0 0 0.06294 1 14354 14354 41.84 1.8823 1 43162000 + 10942 20038 7493 7653 12657 12657 0.021746170035157775 EYQEEAYSI 9 Unmodified _EYQEEAYSI_ 0 0 0 ENSG00000243710|ENST00000372492|CFAP57;nc|ENSG00000243710|Q96MR6-2|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2490234375 2 566.245669 1130.47678 NaN NaN NaN NaN NaN NaN NaN 55.25 1 55.25 54.75 55.75 0 0 0 0 0.76439 1 30688 30688 7.2892 1.5288 1 10943 10713 7494 7654 12658 12658 -0.08323457998108097 EYQIKTNQL 9 Unmodified _EYQIKTNQL_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8017578125 2 568.800946 1135.58734 0.71727 0.00040798 1.5432 0.00087779 2.2605 0.0012858 568.8011769155834 36.763 0.26917 36.763 36.628 36.897 0 35 12 4 0 0 0 0.0021556 1 19488 19488 131.27 52.54 1 20051000 10944 5934 7495 7655 12659 12659 0.02496806780800398 EYQIKTNQL 9 Unmodified _EYQIKTNQL_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8013305664062 2 568.800946 1135.58734 1.7025 0.00096837 -1.5445 -0.0008785 0.158 8.9869E-05 568.7995324213088 41.844 0.39177 37.236 37.062 37.453 -4.6079 49 24 3 0 0 0 0.0094097 1 25199 25199 82.529 19.957 1 48927000 10945 5934 7495 7655 12660 12660 0.02496806780800398 EYQKHFLP 8 Unmodified _EYQKHFLP_ 0 0 0 nc|ENSG00000241644|O95050-2|INMT;ENSG00000241644|ENST00000013222|INMT nc|ENSG00000241644|O95050-2|INMT nc|ENSG00000241644|O95050-2|INMT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8291015625 2 531.274367 1060.53418 0.24903 0.0001323 -1.8921 -0.0010052 -1.6431 -0.00087295 531.7746561835775 75.074 0.46759 75.12 74.984 75.452 0.045967 36 22 2 0 0 0 8.7369 1 41400 41400 44.407 0 1 6504000 10946 10685 7496 7656 12661 12661 0.0063347378879825555 EYQKVGQSF 9 Unmodified _EYQKVGQSF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2661743164062 2 543.266739 1084.51892 -0.52023 -0.00028262 -0.30184 -0.00016398 -0.82207 -0.0004466 543.2668439979834 28.569 0.26544 28.569 28.438 28.704 0 33 13 4 0 0 0 0.0090524 1 14726 14726 85.642 47.668 1 28604000 10947 8795 7497 7657 12662 12662 -0.019954377990416106 EYQKVGQSF 9 Unmodified _EYQKVGQSF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.267578125 2 543.266739 1084.51892 0.9494 0.00051578 -0.22542 -0.00012247 0.72398 0.00039331 543.2665373331329 32.339 0.4948 28.482 28.301 28.796 -3.8562 64 27 3 0 0 0 1.5508E-06 2 18359 18359;18489 160.69 102.01 1 66826000 10948 8795 7497 7657 12663;12664 12663 -0.019954377990416106 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.8146362304688 2 613.813856 1225.61316 0.39797 0.00024428 0.53142 0.00032619 0.92939 0.00057047 613.814246963725 75.302 0.26065 75.302 75.154 75.415 0 32 13 3 0 0 0 0.39863 1 41935 41935 12.532 6.3258 1 1613700 10949 814 7498 7658 12665 12665 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.814453125 2 613.813856 1225.61316 0.71877 0.00044119 -0.67645 -0.00041521 0.042317 2.5974E-05 613.8134281942644 75.702 0.57706 75.225 74.997 75.574 -0.47714 103 26 6 0 0 0 0.0090948 3 41554 41353;41453;41554 85.272 61.437 1 246760000 10950 814 7498 7658 12666;12667;12668 12668 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.2926635742188 2 613.813856 1225.61316 0.42752 0.00026242 -0.084183 -5.1672E-05 0.34334 0.00021075 613.8134574544042 76.19 0.48047 76.238 76.037 76.518 0.047943 29 19 2 0 0 0 0.20139 1 41937 41937 10.824 4.6181 1 4195500 10951 814 7498 7658 12669 12669 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1227.136840820312 1 1226.62044 1225.61316 0.6114 0.00074995 -0.66068 -0.0008104 -0.049285 -6.0454E-05 1226.6193248794868 75.071 0.32146 75.117 75.004 75.326 0.045967 23 15 2 0 0 0 0.067365 1 41492 41492 49.554 31.408 1 8003700 10952 814 7498 7658 12670 12670 0.009377010230764427 EYQKVWNLF 9 Unmodified _EYQKVWNLF_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MSMS AL20221201_MKP_PDAC_01 4 613.8148193359375 2 613.813856 1225.61316 NaN NaN NaN NaN NaN NaN NaN 93.359 1 87.184 86.684 87.684 -6.1757 0 0 0 0.022863 1 61788 61788 74.929 40.827 1 10953 814 7498 7658 12671 12671 0.009377010230764427 EYQLIDCAQYF 11 Carbamidomethyl (C) _EYQLIDC(Carbamidomethyl (C))AQYF_ EYQLIDC(1)AQYF EYQLIDC(78)AQYF 0 1 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 725.3218994140625 2 725.321385 1448.62822 0.30334 0.00022002 -0.014133 -1.0251E-05 0.28921 0.00020977 725.32141668712 85.652 0.56423 79.477 79.196 79.76 -6.1757 100 32 4 0 0 0 0.0033762 2 56555 56280;56555 78.06 62.705 1 112750000 10954 16063;14003 7499 7659 12672;12673 12673 984 -0.0781521996191259 EYQQQRTRQPS 11 Unmodified _EYQQQRTRQPS_ 0 0 0 REV__ODAM|p.Q167R|1|0.2|ENSG00000109205|chr4:70200573-70200573|A/G|missense_variant REV__ODAM|p.Q167R|1|0.2|ENSG00000109205|chr4:70200573-70200573|A/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2374877929688 3 474.235773 1419.68549 0.7097 0.00033657 2.1378 0.0010138 2.8475 0.0013504 474.236772833214 28.871 0.13736 28.809 28.697 28.834 -0.062159 10 5 2 0 0 0 0.73115 1 14907 14907 0.45452 0 1 2268400 + 10955 30063 7500 7660 12674 12674 -0.0075661664129711426 EYQTFCLVPDS 11 Unmodified _EYQTFCLVPDS_ 0 0 0 REV__ENST00000480317.1_1_X:47487885-47489273:-|nuORF REV__ENST00000480317.1_1_X:47487885-47489273:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.2947998046875 2 651.289553 1300.56455 NaN NaN NaN NaN NaN NaN NaN 53.758 1 53.306 52.806 53.806 -0.45173 0 0 0 0.93613 1 29097 29097 5.2969 0.96765 1 + 10956 19557 7501 7661 12675 12675 -0.0737058039896965 EYQVHLPPTF 10 Unmodified _EYQVHLPPTF_ 0 0 0 nc|ENSG00000105808|O43374-2|RASA4;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4 nc|ENSG00000105808|O43374-2|RASA4 nc|ENSG00000105808|O43374-2|RASA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8125610351562 2 615.811313 1229.60807 0.78176 0.00048142 2.3016 0.0014174 3.0834 0.0018988 615.8134637867432 83.971 0.83167 77.795 77.323 78.155 -6.1757 108 44 3 0 0 0 0.13391 1 55187 55187 41.84 1.8823 1 27825000 10957 2366 7502 7662 12676 12676 0.002453971604609251 EYQWIQGRL 9 Unmodified _EYQWIQGRL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.8340454101562 3 398.208495 1191.60366 0.49095 0.0001955 1.8396 0.00073256 2.3306 0.00092806 398.20895443056025 22.686 0.33647 19.908 19.722 20.058 -2.7784 69 24 4 0 0 0 0.20207 1 12269 12269 11.495 3.0504 1 21655000 10958 1623 7503 7663 12677 12677 0.015519327375614012 EYRHTDPALF 10 Unmodified _EYRHTDPALF_ 0 0 0 REV__nc|ENSG00000197429|Q9Y573-2|IPP REV__nc|ENSG00000197429|Q9Y573-2|IPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8037719726562 2 624.80402 1247.59349 0.42153 0.00026338 2.6104 0.001631 3.0319 0.0018944 624.8052400329387 75.074 0.57323 75.12 74.899 75.472 0.045967 39 27 2 0 0 0 0.27276 1 41368 41368 29.082 7.3349 1 5112700 + 10959 29888 7504 7664 12678 12678 -0.020406749877110997 EYRHTDPALF 10 Unmodified _EYRHTDPALF_ 0 0 0 REV__nc|ENSG00000197429|Q9Y573-2|IPP REV__nc|ENSG00000197429|Q9Y573-2|IPP MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8008422851562 2 624.80402 1247.59349 0.89439 0.00055882 -0.22799 -0.00014245 0.66639 0.00041637 624.8029525599488 92.071 0.18192 85.896 85.823 86.005 -6.1757 11 10 2 0 0 0 0.10424 1 60864 60864 45.7 9.5726 1 8136800 + 10960 29888 7504 7664 12679 12679 -0.020406749877110997 EYRIQMELNRY 11 Unmodified _EYRIQMELNRY_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.5853271484375 3 505.585526 1513.73475 0.40568 0.00020511 -0.068073 -3.4417E-05 0.33761 0.00017069 505.58535625325374 37.538 0.45731 37.538 37.369 37.826 0 48 23 3 0 0 0 0.72981 2 19967 19967;20102 1.4551 0.10508 1 4465400 10961 943 7505 7665 12680;12681 12680 -0.0015704467668911093 EYRIQMELNRY 11 Unmodified _EYRIQMELNRY_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 505.585526 1513.73475 -0.38039 -0.00019232 0.85471 0.00043213 0.47432 0.00023981 505.9204667661653 38.032 0.47952 37.761 37.562 38.042 -0.27133 0.11151 0.00070921 NaN 1.4551 63 22 4 NaN NaN NaN NaN 0 NaN NaN 0 5332800 10962 943 7505 7665 -0.0015704467668911093 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.77001953125 2 594.769645 1187.52474 0.089122 5.3007E-05 0.24825 0.00014765 0.33737 0.00020066 594.769981774682 50.468 0.33981 50.468 50.282 50.622 0 51 15 5 0 0 0 0.01861 2 27872 27761;27872 79.596 35.189 1 61325000 10963 2059 7506 7666 12682;12683 12683 -0.06152339287382347 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.76953125 2 594.769645 1187.52474 0.33499 0.00019924 0.23688 0.00014089 0.57186 0.00034013 594.7696978765157 51.062 0.33858 50.648 50.459 50.798 -0.41351 51 16 4 0 0 0 0.0094802 2 27470 27470;27574 99.755 46.18 1 27436000 10964 2059 7506 7666 12684;12685 12684 -0.06152339287382347 EYRPEFSNF 9 Unmodified _EYRPEFSNF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19931694-19949148:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 594.769645 1187.52474 0.67073 0.00039893 -0.31369 -0.00018658 0.35704 0.00021235 594.7696452561748 50.66 0.19835 50.606 50.49 50.688 -0.053871 0.032197 -0.00059214 NaN 99.755 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1503600 10965 2059 7506 7666 -0.06152339287382347 EYRREEVYI 9 Unmodified _EYRREEVYI_ 0 0 0 ENSG00000142513|ENST00000270593|ACP4 ENSG00000142513|ENST00000270593|ACP4 ENSG00000142513|ENST00000270593|ACP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.2619018554688 2 628.817127 1255.6197 0.40509 0.00025473 -0.75688 -0.00047594 -0.35179 -0.00022121 628.8171014385239 46.653 0.19517 46.653 46.523 46.718 0 13 8 2 0 0 0 0.20528 1 25509 25509 8.5933 1.8701 1 845440 10966 5420 7507 7667 12686 12686 0.002115941838155777 EYRRYKKL 8 Unmodified _EYRRYKKL_ 0 0 0 REV__ENSG00000146555|ENST00000404826|SDK1;REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF REV__ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8926086425781 3 385.892619 1154.65603 1.0777 0.00041589 0.16496 6.3657E-05 1.2427 0.00047955 385.89239019048836 42.192 0.4798 37.508 37.252 37.732 -4.6846 75 30 3 0 0 0 0.80232 1 25520 25520 3.5965 0 1 51435000 + 10967 20841;27598 7508 7668 12687 12687 0.08488515871181335 EYRVENSMY 9 Unmodified _EYRVENSMY_ 0 0 0 REV__ENSG00000115604|ENST00000233957|IL18R1 REV__ENSG00000115604|ENST00000233957|IL18R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5086975097656 3 397.509734 1189.50737 -0.48311 -0.00019204 -1.7802 -0.00070763 -2.2633 -0.00089967 397.50912473816174 25.224 0.15542 25.224 25.128 25.283 0 11 7 2 0 0 0 0.58865 1 12946 12946 1.0715 0.10919 1 551370 + 10968 18997 7509 7669 12688 12688 -0.07980002884687565 EYSDVLAKL 9 Unmodified _EYSDVLAKL_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.280029296875 2 519.279315 1036.54408 0.49343 0.00025623 -1.0031 -0.00052087 -0.50963 -0.00026464 519.2787963754676 59.319 0.31692 59.319 59.148 59.465 0 27 13 3 0 0 0 0.08691 1 33028 33028 36.127 20.28 1 7041300 10969 3961 7510 7670 12689 12689 0.027266170035318282 EYSDVLAKL 9 Unmodified _EYSDVLAKL_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.279315 1036.54408 0.17482 9.0781E-05 -0.024952 -1.2957E-05 0.14987 7.7824E-05 519.279300622108 59.843 0.21494 59.352 59.214 59.429 -0.49079 0.016875 0.00084456 NaN 36.127 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1265700 10970 3961 7510 7670 0.027266170035318282 EYSFKIFPE 9 Unmodified _EYSFKIFPE_ 0 0 0 nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG nc|ENSG00000106991|P17813-2|ENG nc|ENSG00000106991|P17813-2|ENG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7837524414062 2 580.28714 1158.55973 0.52974 0.0003074 0.23679 0.00013741 0.76654 0.00044481 580.2876544186238 71.632 0.7328 71.155 70.792 71.525 -0.47609 94 29 5 0 0 0 0.54444 1 39046 39046 4.756 0 1 12098000 10971 2468 7511 7671 12690 12690 -0.01321096479409789 EYSFKVPEF 9 Unmodified _EYSFKVPEF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2791137695312 2 573.279315 1144.54408 0.32455 0.00018606 -1.0271 -0.00058881 -0.70254 -0.00040275 573.7799861517013 70.373 0.19662 69.894 69.758 69.954 -0.47903 13 8 2 0 0 0 0.48152 1 38478 38478 8.5933 0 1 1654300 10972 16348 7512 7672 12691 12691 -0.022413829964762044 EYSGHESLFP 10 Unmodified _EYSGHESLFP_ 0 0 0 ENST00000464132.1_1_1:150551076-150551247:-|nuORF ENST00000464132.1_1_1:150551076-150551247:-|nuORF ENST00000464132.1_1_1:150551076-150551247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2626342773438 2 583.261653 1164.50875 0.48485 0.00028279 -0.39656 -0.0002313 0.088286 5.1494E-05 583.2613442420895 43.075 0.17666 43.075 42.985 43.162 0 12 8 2 0 0 0 0.2178 1 23386 23386 32.305 9.5692 1 8064200 10973 13709 7513 7673 12692 12692 -0.06692045524300738 EYSHNEAL 8 Unmodified _EYSHNEAL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7143859863281 2 481.714339 961.414125 NaN NaN NaN NaN NaN NaN NaN 23.876 1 23.876 23.376 24.376 0 0 0 0 0.95607 1 12183 12183 9.3474 4.1168 1 + 10974 19178 7514 7674 12693 12693 -0.06812559275613239 EYSIVIQQL 9 Unmodified _EYSIVIQQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8005981445312 2 546.800414 1091.58628 0.59093 0.00032312 0.10979 6.0036E-05 0.70073 0.00038316 546.8004064509009 73.098 0.38741 73.098 72.883 73.271 0 46 17 4 0 0 0 0.010877 2 40733 40635;40733 77.984 41.94 1 8171700 10975 10723 7515 7675 12694;12695 12695 0.04414592411899321 EYSIVIQQL 9 Unmodified _EYSIVIQQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8004760742188 2 546.800414 1091.58628 0.55796 0.00030509 -0.071459 -3.9074E-05 0.4865 0.00026602 546.8002468545429 73.612 0.39121 73.136 72.932 73.323 -0.47588 42 16 4 0 0 0 0.010877 2 40333 40230;40333 77.984 41.94 1 9483000 10976 10723 7515 7675 12696;12697 12697 0.04414592411899321 EYSIVIQQL 9 Unmodified _EYSIVIQQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8011474609375 2 546.800414 1091.58628 0.74147 0.00040544 -0.5748 -0.0003143 0.16667 9.1136E-05 546.8000037965985 80.935 1.0705 74.759 73.942 75.013 -6.1757 103 60 3 0 0 0 0.010877 2 53005 53005;53122 77.984 41.94 1 86841000 10977 10723 7515 7675 12698;12699 12698 0.04414592411899321 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1974792480469 3 406.197491 1215.57064 -0.37504 -0.00015234 0.098226 3.9899E-05 -0.27681 -0.00011244 406.1976092421141 23.417 0.3048 23.417 23.264 23.569 0 54 14 5 0 0 0 0.019303 2 11916 11916;12013 57.722 42.474 1 35038000 10978 9847;3221 7516 7676 12700;12701 12700 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7953491210938 2 608.792598 1215.57064 -0.35525 -0.00021628 0.020715 1.2611E-05 -0.33454 -0.00020366 608.7928129260731 23.414 0.18376 23.414 23.326 23.51 0 24 8 3 0 0 0 0.023481 1 11922 11922 60.074 30.992 1 2293100 10979 9847;3221 7516 7676 12702 12702 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.1971740722656 3 406.197491 1215.57064 0.027416 1.1136E-05 -0.86375 -0.00035085 -0.83634 -0.00033972 406.19722837342783 23.506 0.27914 23.519 23.412 23.691 0.012394 27 12 3 0 0 0 0.031062 1 11987 11987 57.722 46.922 1 13977000 10980 9847;3221 7516 7676 12703 12703 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.1979064941406 3 406.197491 1215.57064 -0.049789 -2.0224E-05 -0.29555 -0.00012005 -0.34534 -0.00014028 406.1973539000799 23.366 0.16158 23.387 23.305 23.466 0.021185 15 7 3 0 0 0 0.019303 1 12037 12037 57.722 42.474 1 6932100 10981 9847;3221 7516 7676 12704 12704 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.1972045898438 3 406.197491 1215.57064 0.1462 5.9387E-05 -0.67889 -0.00027576 -0.53269 -0.00021638 406.19721868856567 25.977 0.62366 23.026 22.735 23.358 -2.9511 172 38 6 0 0 0 0.010818 3 14232 14125;14232;14352 66.457 51.208 1 1350800000 10982 9847;3221 7516 7676 12705;12706;12707 12706 -0.028520173767901724 EYSKQMQRF 9 Unmodified _EYSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7915649414062 2 608.792598 1215.57064 -0.15855 -9.6524E-05 -0.39363 -0.00023964 -0.55218 -0.00033617 608.7923992565459 25.967 0.48968 23.016 22.772 23.261 -2.9511 118 31 5 0 0 0 9.232E-11 3 14147 14147;14255;14376 176.84 124.57 1 248160000 10983 9847;3221 7516 7676 12708;12709;12710 12708 -0.028520173767901724 EYSKQMQRF 9 Oxidation (M) _EYSKQM(Oxidation (M))QRF_ EYSKQM(1)QRF EYSKQM(79)QRF 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7901000976562 2 616.790055 1231.56556 0.33732 0.00020806 -0.60773 -0.00037484 -0.27041 -0.00016679 616.7898822647834 17.661 0.46365 15.074 14.928 15.392 -2.5866 195 60 5 0 0 0 0.010611 2 9186 9186;9293 78.728 46.423 1 114030000 10984 9847;3221 7516 7677 12711;12712 12711 573 -0.04096321239421741 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8157958984375 2 638.814053 1275.61355 0.53724 0.0003432 1.2747 0.0008143 1.812 0.0011575 638.8146403761514 51.402 0.24594 51.402 51.254 51.5 0 29 10 4 0 0 0 0.040614 1 28365 28365 82.529 54.901 1 6358800 10985 6896 7517 7678 12713 12713 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.8152465820312 2 638.814053 1275.61355 0.10971 7.0085E-05 0.34619 0.00022115 0.4559 0.00029123 638.8142067435252 51.984 0.31137 51.551 51.418 51.73 -0.43367 60 15 5 0 0 0 0.020986 2 28017 28017;28126 96.367 78.22 1 45402000 10986 6896 7517 7678 12714;12715 12714 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.81591796875 2 638.814053 1275.61355 0.047968 3.0643E-05 1.9339 0.0012354 1.9818 0.001266 638.8154824287762 51.685 0.23759 51.626 51.494 51.731 -0.058918 28 11 3 0 0 0 0.093652 1 27966 27966 63.961 43.507 1 5202200 10987 6896 7517 7678 12716 12716 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8143310546875 2 638.814053 1275.61355 0.056041 3.58E-05 0.60811 0.00038847 0.66415 0.00042427 638.8144888098132 58.047 0.55646 52.02 51.77 52.327 -6.0275 59 30 2 0 0 0 2.2019E-05 3 37066 37066;37201;37334 155.95 112.1 1 187930000 10988 6896 7517 7678 12717;12718;12719 12717 -0.013229240477357962 EYSKYLQQAF 10 Unmodified _EYSKYLQQAF_ 0 0 0 nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 nc|ENSG00000162702|Q9Y2X9-2|ZNF281 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8155517578125 2 638.814053 1275.61355 1.2242 0.00078205 -0.34081 -0.00021772 0.88342 0.00056434 638.8138187291163 58.487 0.45461 52.412 52.28 52.734 -6.0745 49 25 2 0 0 0 0.010306 2 37460 37460;37586 110.55 92.406 1 25083000 10989 6896 7517 7678 12720;12721 12720 -0.013229240477357962 EYSLFPGQVVI 11 Unmodified _EYSLFPGQVVI_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3358764648438 2 626.334621 1250.65469 0.24948 0.00015626 0.37408 0.0002343 0.62356 0.00039056 626.3349238941416 94.953 0.35243 94.585 94.402 94.754 -0.36814 43 17 3 0 0 0 0.57006 1 51841 51841 21.537 10.713 1 1246400 10990 484 7518 7679 12722 12722 0.039388369917332966 EYSLFPGQVVI 11 Unmodified _EYSLFPGQVVI_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3380126953125 2 626.334621 1250.65469 0.88522 0.00055444 2.2583 0.0014144 3.1435 0.0019689 626.3361125223574 100.01 0.21171 93.836 93.727 93.938 -6.1757 30 14 3 0 0 0 0.0017085 1 66764 66764 99.755 74.356 1 52771000 10991 484 7518 7679 12723 12723 0.039388369917332966 EYSLPVLTF 9 Unmodified _EYSLPVLTF_ 0 0 0 ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7831420898438 2 534.784233 1067.55391 0.28342 0.00015157 -1.242 -0.00066419 -0.95856 -0.00051262 535.2849951659194 84.144 0.25085 84.144 84.021 84.272 0 20 12 2 0 0 0 0.49272 1 46687 46687 7.9102 0 1 540810 10992 2411 7519 7680 12724 12724 0.022838050088694217 EYSLYQKAL 9 Unmodified _EYSLYQKAL_ 0 0 0 REV__nc|ENSG00000150687|O95084-2|PRSS23 REV__nc|ENSG00000150687|O95084-2|PRSS23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7908935546875 2 557.792589 1113.57063 NaN NaN NaN NaN NaN NaN NaN 73.129 1 73.129 72.629 73.629 0 0 0 0 0.77016 1 40711 40711 10.824 5.0635 1 + 10993 29701 7520 7681 12725 12725 0.01838305894852965 EYSPPCDTPY 10 Unmodified _EYSPPCDTPY_ 0 0 0 REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF REV__ENST00000368366.5_1_1:155217575-155221373:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.238525390625 2 586.234247 1170.45394 0.52546 0.00030804 0.75047 0.00043995 1.2759 0.000748 586.2350915794286 67.809 0.3667 61.633 61.418 61.784 -6.1757 33 20 2 0 0 0 0.42068 1 44137 44137 20.454 5.6154 1 43593000 + 10994 21565 7521 7682 12726 12726 -0.12446800387215262 EYSPRHFWW 9 Unmodified _EYSPRHFWW_ 0 0 0 ENSG00000164023|ENST00000690982|SGMS2 ENSG00000164023|ENST00000690982|SGMS2 ENSG00000164023|ENST00000690982|SGMS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.5369567871094 3 436.536724 1306.58834 0.76777 0.00033516 0.053457 2.3336E-05 0.82123 0.0003585 436.53665413858397 58.636 0.26836 58.575 58.452 58.72 -0.060719 31 13 3 0 0 0 0.10734 1 31950 31950 36.506 28.062 1 4641200 10995 7114 7522 7683 12727 12727 -0.05268934059631647 EYSQMYSYSYN 11 Unmodified _EYSQMYSYSYN_ 0 0 0 nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 717.7806396484375 2 717.77955 1433.54455 0.36172 0.00025963 1.1836 0.0008496 1.5454 0.0011092 717.7802269406395 44.775 0.3401 39.923 39.775 40.115 -4.852 54 26 3 0 0 0 0.53952 1 27426 27426 14.405 2.1647 1 15657000 10996 8882 7523 7684 12728 12728 -0.1548837612956504 EYSRFVNQI 9 Unmodified _EYSRFVNQI_ 0 0 0 ENST00000483237.1_1_1:155891178-155891799:-|nuORF;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4 ENST00000483237.1_1_1:155891178-155891799:-|nuORF ENST00000483237.1_1_1:155891178-155891799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2923583984375 2 578.293288 1154.57202 0.10418 6.0244E-05 -0.14807 -8.5628E-05 -0.043894 -2.5383E-05 578.293195368056 44.232 0.1944 44.232 44.111 44.305 0 16 9 2 0 0 0 0.0047067 1 24034 24034 118.07 68.135 1 10975000 10997 4437 7524 7685 12729 12729 0.0009193998362206912 EYSRFVNQI 9 Unmodified _EYSRFVNQI_ 0 0 0 ENST00000483237.1_1_1:155891178-155891799:-|nuORF;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4;ENSG00000132680|ENST00000368321|KHDC4 ENST00000483237.1_1_1:155891178-155891799:-|nuORF ENST00000483237.1_1_1:155891178-155891799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2933959960938 2 578.293288 1154.57202 -0.15526 -8.9786E-05 0.31975 0.00018491 0.16449 9.5123E-05 578.2936027948468 44.465 0.12991 44.149 44.115 44.245 -0.31585 14 8 2 0 0 0 0.008513 1 23733 23733 99.755 54.056 1 19333000 10998 4437 7524 7685 12730 12730 0.0009193998362206912 EYSRQPTGHKL 11 Unmodified _EYSRQPTGHKL_ 0 0 0 ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.8394775390625 2 658.341301 1314.66805 0.88444 0.00058226 -3.4263 -0.0022557 -2.5418 -0.0016734 658.8400380568022 80.763 0.18057 80.27 80.176 80.356 -0.49247 10 7 2 0 0 0 0.73506 1 44239 44239 0.96228 0.43751 1 380970 10999 10165 7525 7686 12731 12731 0.023300878236796052 EYSSISEKL 9 Unmodified _EYSSISEKL_ 0 0 0 ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76;ENST00000519791.5_1_8:124238797-124251345:-|nuORF ENSG00000189376|ENST00000276704|C8orf76 ENSG00000189376|ENST00000276704|C8orf76 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2669067382812 2 528.266404 1054.51826 0.629 0.00033228 0.023787 1.2566E-05 0.65279 0.00034485 528.2664452133481 36.968 0.30084 36.968 36.837 37.138 0 22 14 2 0 0 0 0.010611 1 19618 19618 78.728 34.87 1 6860600 11000 9748 7526 7687 12732 12732 -0.006822772387522491 EYSSISEKL 9 Unmodified _EYSSISEKL_ 0 0 0 ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76;ENST00000519791.5_1_8:124238797-124251345:-|nuORF ENSG00000189376|ENST00000276704|C8orf76 ENSG00000189376|ENST00000276704|C8orf76 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2666015625 2 528.266404 1054.51826 0.74048 0.00039117 -1.5473 -0.00081738 -0.80681 -0.00042621 528.2652752676913 42.169 0.3788 37.485 37.234 37.613 -4.6846 38 23 2 0 0 0 0.040683 1 25349 25349 49.554 20.473 1 20262000 11001 9748 7526 7687 12733 12733 -0.006822772387522491 EYSSLFNDF 9 Unmodified _EYSSLFNDF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2434692382812 2 561.242929 1120.47131 0.35385 0.00019859 0.72791 0.00040853 1.0818 0.00060713 561.2432492859256 80.345 0.46664 80.345 80.101 80.568 0 85 22 5 0 0 0 0.095405 2 44629 44532;44629 34.102 18.255 1 36079000 11002 4951 7527 7688 12734;12735 12735 -0.08411136789914053 EYSSLFNDF 9 Unmodified _EYSSLFNDF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2432861328125 2 561.242929 1120.47131 1.0166 0.00057056 -0.25324 -0.00014213 0.76336 0.00042843 561.242630046844 80.89 0.47589 80.397 80.126 80.602 -0.49247 71 20 5 0 0 0 0.087258 2 44305 44202;44305 36.044 20.197 1 25369000 11003 4951 7527 7688 12736;12737 12737 -0.08411136789914053 EYSSLFNDF 9 Unmodified _EYSSLFNDF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2443237304688 2 561.242929 1120.47131 1.381 0.00077507 0.31443 0.00017647 1.6954 0.00095154 561.2429559402965 88.374 0.61221 82.198 81.939 82.551 -6.1757 116 33 4 0 0 0 0.019303 3 58173 58173;58301;58436 64.236 48.389 1 226840000 11004 4951 7527 7688 12738;12739;12740 12738 -0.08411136789914053 EYSWVKANL 9 Unmodified _EYSWVKANL_ 0 0 0 ENST00000530683.5_1_11:407853-409994:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR ENST00000530683.5_1_11:407853-409994:-|nuORF ENST00000530683.5_1_11:407853-409994:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2864990234375 2 555.284931 1108.55531 0.24544 0.00013629 3.606 0.0020023 3.8514 0.0021386 555.2868758272259 54.686 0.13784 54.219 54.104 54.242 -0.46664 11 6 2 0 0 0 0.070838 1 29629 29629 39.957 23.015 1 5437900 11005 9342 7528 7689 12741 12741 0.005374390976612631 EYTAKIALL 9 Unmodified _EYTAKIALL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.3000793457031 2 511.30005 1020.58555 0.54334 0.00027781 -0.48027 -0.00024556 0.063073 3.2249E-05 511.29964747527174 60.895 0.74071 60.895 60.67 61.411 0 100 31 5 0 0 0 0.018301 2 33886 33886;33988 65.235 25.278 1 144930000 11006 1622 7529 7690 12742;12743 12742 0.07607797762852897 EYTAKIALL 9 Unmodified _EYTAKIALL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2998352050781 2 511.30005 1020.58555 -0.47473 -0.00024273 0.52743 0.00026967 0.052694 2.6943E-05 511.3002339124143 61.237 0.80672 60.748 60.537 61.343 -0.48932 123 38 5 0 0 0 0.0082661 2 33376 33376;33481 92.491 54.34 1 234240000 11007 1622 7529 7690 12744;12745 12744 0.07607797762852897 EYTAKIALL 9 Unmodified _EYTAKIALL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3003540039062 2 511.30005 1020.58555 0.60438 0.00030902 -0.031463 -1.6087E-05 0.57292 0.00029293 511.30002751811793 60.899 0.39148 60.855 60.672 61.064 -0.04351 50 19 4 0 0 0 0.013041 2 33192 33192;33292 71.922 35.01 1 21208000 11008 1622 7529 7690 12746;12747 12746 0.07607797762852897 EYTAKIALL 9 Unmodified _EYTAKIALL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.3001708984375 2 511.30005 1020.58555 0.32918 0.00016831 0.042118 2.1535E-05 0.3713 0.00018985 511.3000457419892 66.612 1.0321 60.436 60.079 61.111 -6.1757 176 57 4 0 0 0 0.013041 4 43320 43198;43320;43453;43599 71.922 21.067 1 825540000 11009 1622 7529 7690 12748;12749;12750;12751 12749 0.07607797762852897 EYTDDIPLL 9 Unmodified _EYTDDIPLL_ 0 0 0 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7686157226562 2 539.76878 1077.52301 0.24304 0.00013119 3.6821 0.0019875 3.9251 0.0021186 539.7691312389579 81.643 0.41199 81.643 81.37 81.782 0 35 20 2 0 0 0 0.078417 1 45345 45345 38.151 13.477 1 1186500 11010 1861 7530 7691 12752 12752 -0.01265393095991385 EYTDMCALE 9 Unmodified _EYTDMCALE_ 0 0 0 REV__ENSG00000155249|ENST00000641172|OR4K1 REV__ENSG00000155249|ENST00000641172|OR4K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7080688476562 2 537.70955 1073.40455 -0.17552 -9.4376E-05 -0.9318 -0.00050104 -1.1073 -0.00059541 537.7090082599225 44.654 0.2561 44.654 44.532 44.788 0 23 13 2 0 0 0 0.54444 1 24269 24269 4.756 0 1 16587000 + 11011 21263 7531 7692 12753 12753 -0.12921831667676997 EYTDMCALE 9 Unmodified _EYTDMCALE_ 0 0 0 REV__ENSG00000155249|ENST00000641172|OR4K1 REV__ENSG00000155249|ENST00000641172|OR4K1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 537.70955 1073.40455 -0.17552 -9.4376E-05 -0.9318 -0.00050104 -1.1073 -0.00059541 537.7090082599225 44.654 0.2561 44.654 44.532 44.788 0 0 0 NaN 4.756 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 16587000 + 11012 21263 7531 7692 -0.12921831667676997 EYTDVLQKI 9 Unmodified _EYTDVLQKI_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7969360351562 2 554.797872 1107.58119 0.099144 5.5005E-05 -0.28609 -0.00015872 -0.18694 -0.00010372 554.7975984147109 56.24 0.62835 56.24 56.007 56.635 0 106 28 5 0 0 0 0.008678 2 31191 31191;31296 88.904 34.13 1 684650000 11013 4289 7532 7693 12754;12755 12754 0.031702885492677524 EYTDVLQKI 9 Unmodified _EYTDVLQKI_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7975463867188 2 554.797872 1107.58119 0.21127 0.00011721 -3.5927 -0.0019932 -3.3814 -0.001876 554.7960074630031 56.436 0.36841 56.367 56.23 56.598 -0.068741 47 18 3 0 0 0 0.015445 1 30666 30666 68.081 22.06 1 15834000 11014 4289 7532 7693 12756 12756 0.031702885492677524 EYTDVLQKI 9 Unmodified _EYTDVLQKI_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7984008789062 2 554.797872 1107.58119 0.85289 0.00047318 0.44499 0.00024688 1.2979 0.00072006 554.7978842842999 63.232 1.1726 57.056 56.442 57.615 -6.1757 156 63 5 0 0 0 0.0021556 3 40821 40688;40821;40955 131.27 60.134 1 982270000 11015 4289 7532 7693 12757;12758;12759 12758 0.031702885492677524 EYTDVYPEI 9 Unmodified _EYTDVYPEI_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENST00000485420.5_1_X:51636757-51640983:+|nuORF nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.759521484375 2 564.758412 1127.50227 0.71788 0.00040543 -0.041174 -2.3253E-05 0.6767 0.00038217 564.758482023648 60.325 0.49002 60.325 60.068 60.559 0 74 21 4 0 0 0 0.016184 2 33593 33593;33695 67.344 57.16 1 20788000 11016 2036 7533 7694 12760;12761 12760 -0.056379834756626224 EYTEHATVNI 10 Unmodified _EYTEHATVNI_ 0 0 0 ENST00000603993.1_1_13:111535584-111535650:-|nuORF ENST00000603993.1_1_13:111535584-111535650:-|nuORF ENST00000603993.1_1_13:111535584-111535650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7815551757812 2 588.78021 1175.54587 1.0645 0.00062674 -0.40865 -0.0002406 0.65583 0.00038614 588.7803918016552 100.35 0.15318 94.173 94.088 94.241 -6.1757 21 9 3 0 0 0 0.1028 1 67079 67079 62.573 18.591 1 41904000 11017 15835 7534 7695 12762 12762 -0.03488373978530035 EYTEMKALL 9 Oxidation (M) _EYTEM(Oxidation (M))KALL_ EYTEM(1)KALL EYTEM(46)KALL 0 0 1 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2788696289062 2 557.278457 1112.54236 0.4766 0.0002656 -0.67811 -0.0003779 -0.20151 -0.0001123 557.2781757143297 39.556 0.51406 39.556 39.244 39.758 0 89 24 6 0 0 0 0.047788 2 21278 21162;21278 45.7 13.394 1 62926000 11018 3564 7535 7696 12763;12764 12764 631 -0.009407600767417534 EYTEMKALL 9 Unmodified _EYTEMKALL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2805786132812 2 549.281 1096.54745 -0.11704 -6.4285E-05 -0.12663 -6.9557E-05 -0.24367 -0.00013384 549.2808740595043 56.15 0.33457 56.15 55.987 56.322 0 25 15 2 0 0 0 0.024882 1 31188 31188 58.679 12.658 1 10444000 11019 3564 7535 7697 12765 12765 0.003035437858898149 EYTEMKALL 9 Unmodified _EYTEMKALL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.281005859375 2 549.281 1096.54745 NaN NaN NaN NaN NaN NaN NaN 56.624 1 56.138 55.638 56.638 -0.48554 0 0 0 0.18351 1 30756 30756 32.786 8.7651 1 11020 3564 7535 7697 12766 12766 0.003035437858898149 EYTEMKALL 9 Unmodified _EYTEMKALL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.281982421875 2 549.281 1096.54745 1.3539 0.00074366 0.5997 0.0003294 1.9536 0.0010731 549.2810086905281 62.392 0.73532 56.216 56.002 56.737 -6.1757 92 38 4 0 0 0 0.039985 2 40211 40211;40343 49.933 17.628 1 103500000 11021 3564 7535 7697 12767;12768 12767 0.003035437858898149 EYTFERWM 8 Unmodified _EYTFERWM_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1 ENSG00000152767|ENST00000319562|FARP1 ENSG00000152767|ENST00000319562|FARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2553100585938 2 581.255317 1160.49608 -0.17635 -0.0001025 -2.5083 -0.001458 -2.6847 -0.0015605 581.2544978133756 56.244 0.31231 56.244 56.071 56.383 0 32 14 3 0 0 0 0.74163 1 31253 31253 13.508 3.3245 1 11006000 11022 6213 7536 7698 12769 12769 -0.07774780188174191 EYTFYEMLMP 10 Unmodified _EYTFYEMLMP_ 0 0 0 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 REV__nc|ENSG00000118564|Q9UKA1-2|FBXL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.7860717773438 2 662.285425 1322.5563 0.236 0.0001563 0.60166 0.00039847 0.83766 0.00055477 662.2857052997188 43.068 0.35365 43.068 42.947 43.3 0 32 17 2 0 0 0 0.6606 1 23488 23488 7.2892 2.3922 1 8904200 + 11023 19160 7537 7699 12770 12770 -0.09207850639950266 EYTINNLKF 9 Unmodified _EYTINNLKF_ 0 0 0 ENSG00000063854|ENST00000397356|HAGH;nc|ENSG00000063854|Q16775-2|HAGH ENSG00000063854|ENST00000397356|HAGH ENSG00000063854|ENST00000397356|HAGH MSMS AL20221201_MKP_PDAC_01 4 571.2949829101562 2 571.298039 1140.58152 NaN NaN NaN NaN NaN NaN NaN 66.563 1 60.388 59.888 60.888 -6.1757 0 0 0 0.098163 1 43296 43296 43.858 25.712 1 11024 866 7538 7700 12771 12771 0.01685708269155839 EYTKYHERL 9 Unmodified _EYTKYHERL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5444641113281 3 413.543655 1237.60914 -0.58186 -0.00024063 1.39 0.00057484 0.80817 0.00033421 413.54441055665944 18.643 0.071726 18.643 18.62 18.692 0 10 8 2 0 0 0 0.59812 1 9287 9287 2.086 1.8502 1 297300 11025 16480 7539 7701 12772 12772 -0.0001638847061258275 EYTLMRATF 9 Oxidation (M) _EYTLM(Oxidation (M))RATF_ EYTLM(1)RATF EYTLM(66)RATF 0 0 1 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2767944335938 2 574.276249 1146.53795 0.015974 9.1736E-06 2.5998 0.001493 2.6157 0.0015022 574.2773788184707 45.088 0.36396 45.088 44.925 45.288 0 32 18 2 0 0 0 0.017075 2 24517 24517;24626 66.457 24.751 1 10335000 11026 9431 7540 7702 12773;12774 12773 1554 -0.029462244996466325 EYTLMRATF 9 Oxidation (M) _EYTLM(Oxidation (M))RATF_ EYTLM(1)RATF EYTLM(80)RATF 0 0 1 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2772216796875 2 574.276249 1146.53795 0.15819 9.0843E-05 -0.28255 -0.00016226 -0.12436 -7.1417E-05 574.2759524630226 45.417 0.30529 45.093 44.948 45.253 -0.32425 27 19 2 0 0 0 0.010301 2 24224 24224;24330 79.596 52.713 1 17971000 11027 9431 7540 7702 12775;12776 12775 1554 -0.029462244996466325 EYTLMRATF 9 Oxidation (M) _EYTLM(Oxidation (M))RATF_ EYTLM(1)RATF EYTLM(62)RATF 0 0 1 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MSMS AL20221201_MKP_PDAC_01 4 574.2778930664062 2 574.276249 1146.53795 NaN NaN NaN NaN NaN NaN NaN 50.833 1 45.184 44.684 45.684 -5.649 0 0 0 0.041018 1 31937 31937 61.602 41.148 1 11028 9431 7540 7702 12777 12777 1554 -0.029462244996466325 EYTLMRATF 9 Unmodified _EYTLMRATF_ 0 0 0 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2774047851562 2 566.278792 1130.54303 0.45051 0.00025511 -0.098877 -5.5992E-05 0.35163 0.00019912 566.2786462596437 58.834 0.32378 58.343 58.232 58.556 -0.49079 33 15 3 0 0 0 0.010301 1 32003 32003 79.596 45.494 1 5744100 11029 9431 7540 7703 12778 12778 -0.017019206370378015 EYTLMRATF 9 Unmodified _EYTLMRATF_ 0 0 0 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.27734375 2 566.278792 1130.54303 1.2356 0.00069971 -3.247 -0.0018387 -2.0114 -0.001139 566.2768459072105 64.767 0.65129 58.591 58.331 58.982 -6.1757 106 36 4 0 0 0 0.085319 1 41910 41910 36.506 19.564 1 69495000 11030 9431 7540 7703 12779 12779 -0.017019206370378015 EYTPRSWNF 9 Unmodified _EYTPRSWNF_ 0 0 0 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.277587890625 2 600.277638 1198.54072 0.39663 0.00023809 -0.11337 -6.8053E-05 0.28327 0.00017004 600.2775165303192 53.923 0.3612 53.456 53.306 53.667 -0.46664 47 17 4 0 0 0 0.0091809 1 29155 29155 103.35 65.38 1 15273000 11031 6473 7541 7704 12780 12780 -0.050606330504933794 EYTPRSWNF 9 Unmodified _EYTPRSWNF_ 0 0 0 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2774047851562 2 600.277638 1198.54072 0.41523 0.00024925 -0.44563 -0.0002675 -0.030406 -1.8252E-05 600.2775221615217 59.3 0.71899 53.226 52.817 53.536 -6.0745 86 39 3 0 0 0 0.0020356 2 37950 37950;38083 157.8 123.69 1 129180000 11032 6473 7541 7704 12781;12782 12781 -0.050606330504933794 EYTPRSWNF 9 Unmodified _EYTPRSWNF_ 0 0 0 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 600.277638 1198.54072 -0.40701 -0.00024432 0.21712 0.00013033 -0.18988 -0.00011398 600.2771567301194 53.553 0.093933 53.49 53.423 53.517 -0.063423 0.099248 0.00056778 NaN 157.8 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2785500 11033 6473 7541 7704 -0.050606330504933794 EYTPSHWNF 9 Unmodified _EYTPSHWNF_ 0 0 0 REV__ENSG00000100600|ENST00000334869|LGMN REV__ENSG00000100600|ENST00000334869|LGMN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1750793457031 3 394.173451 1179.49852 NaN NaN NaN NaN NaN NaN NaN 81.018 1 80.526 80.026 81.026 -0.49247 0 0 0 0.83049 1 44365 44365 2.2828 1.2692 1 + 11034 18088 7542 7705 12783 12783 -0.0840460845886355 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8194580078125 2 563.318774 1124.623 0.94373 0.00053162 0.23769 0.0001339 1.1814 0.00066552 563.3189890337483 81.32 0.32205 80.828 80.695 81.017 -0.49247 45 16 4 0 0 0 0.023481 2 44493 44493;44597 60.074 20.117 1 5769700 11035 4168 7543 7706 12784;12785 12784 0.06566889028476908 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3192749023438 2 563.318774 1124.623 0.89381 0.0005035 -0.58183 -0.00032776 0.31198 0.00017575 563.3184194983392 80.665 0.61693 80.722 80.518 81.135 0.057587 76 24 5 0 0 0 0.011671 3 44533 44533;44644;44753 75.761 35.804 1 141150000 11036 4168 7543 7706 12786;12787;12788 12786 0.06566889028476908 EYTRALFLL 9 Unmodified _EYTRALFLL_ 0 0 0 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3223876953125 2 563.318774 1124.623 1.4425 0.00081258 0.63861 0.00035974 2.0811 0.0011723 563.319337481473 98.023 0.25226 91.847 91.687 91.939 -6.1757 49 15 4 0 0 0 0.013609 1 64928 64928 70.332 24.311 1 582680000 11037 4168 7543 7706 12789 12789 0.06566889028476908 EYTRYLFAL 9 Unmodified _EYTRYLFAL_ 0 0 0 nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2 nc|ENSG00000006607|O94887-3|FARP2 nc|ENSG00000006607|O94887-3|FARP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3099975585938 2 588.308406 1174.60226 -0.23257 -0.00013682 1.2716 0.0007481 1.039 0.00061128 588.3091661362984 76.852 0.36608 76.372 76.195 76.561 -0.47945 50 16 4 0 0 0 0.017075 2 42028 42028;42130 66.457 42.436 1 5414200 11038 340 7544 7707 12790;12791 12790 0.021942986488056704 EYTRYLFAL 9 Unmodified _EYTRYLFAL_ 0 0 0 nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2 nc|ENSG00000006607|O94887-3|FARP2 nc|ENSG00000006607|O94887-3|FARP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3073120117188 2 588.308406 1174.60226 0.27486 0.00016171 -0.14681 -8.6369E-05 0.12806 7.5336E-05 588.3081516126055 76.294 0.35907 76.342 76.182 76.541 0.047951 46 14 4 0 0 0 0.011291 2 42072 42072;42179 76.825 47.743 1 25732000 11039 340 7544 7707 12792;12793 12792 0.021942986488056704 EYTRYLFAL 9 Unmodified _EYTRYLFAL_ 0 0 0 nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2 nc|ENSG00000006607|O94887-3|FARP2 nc|ENSG00000006607|O94887-3|FARP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3088989257812 2 588.308406 1174.60226 1.0413 0.00061263 -0.25822 -0.00015191 0.78313 0.00046072 588.3079029423744 94.051 0.66431 87.875 87.486 88.151 -6.1757 97 38 3 0 0 0 0.014417 2 62212 62212;62331 69.105 42.221 1 45333000 11040 340 7544 7707 12794;12795 12794 0.021942986488056704 EYTSILHLF 9 Unmodified _EYTSILHLF_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7955322265625 2 561.795132 1121.57571 0.6618 0.0003718 0.72321 0.00040629 1.385 0.00077809 561.7953416826639 86.851 0.27797 86.348 86.191 86.469 -0.50318 25 10 3 0 0 0 0.15471 1 47515 47515 38.151 38.151 1 974750 11041 10156 7545 7708 12796 12796 0.019786097574751693 EYTSLIPNL 9 Unmodified _EYTSLIPNL_ 0 0 0 nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;nc|ENSG00000130164|P01130-2|LDLR nc|ENSG00000130164|P01130-3|LDLR nc|ENSG00000130164|P01130-3|LDLR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.27978515625 2 525.279315 1048.54408 0.46178 0.00024256 1.1042 0.00057999 1.5659 0.00082255 525.2795685000171 82.348 0.33077 82.348 82.149 82.48 0 29 14 3 0 0 0 0.30562 1 45677 45677 16.942 8.349 1 707690 11042 4183 7546 7709 12797 12797 0.02174617003538515 EYTSLIPNL 9 Unmodified _EYTSLIPNL_ 0 0 0 nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;nc|ENSG00000130164|P01130-2|LDLR nc|ENSG00000130164|P01130-3|LDLR nc|ENSG00000130164|P01130-3|LDLR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2791748046875 2 525.279315 1048.54408 0.45743 0.00024028 1.1372 0.00059733 1.5946 0.00083761 525.2793524443008 82.868 0.72595 82.37 81.917 82.642 -0.49751 69 30 4 0 0 0 0.012148 2 45368 45270;45368 74.423 30.564 1 4064300 11043 4183 7546 7709 12798;12799 12799 0.02174617003538515 EYTSLIPNL 9 Unmodified _EYTSLIPNL_ 0 0 0 nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR;ENST00000560173.1_1_19:11221401-11224126:+|nuORF;nc|ENSG00000130164|P01130-2|LDLR nc|ENSG00000130164|P01130-3|LDLR nc|ENSG00000130164|P01130-3|LDLR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.7529907226562 2 525.279315 1048.54408 0.94035 0.00049394 -0.46782 -0.00024574 0.47253 0.00024821 525.2787322458565 90.473 0.6051 84.297 83.9 84.505 -6.1757 62 35 2 0 0 0 0.16785 1 59768 59768 16.942 5.302 1 28316000 11044 4183 7546 7709 12800 12800 0.02174617003538515 EYTSSSDT 8 Unmodified _EYTSSSDT_ 0 0 0 ENSG00000155495|ENST00000285879|MAGEC1 ENSG00000155495|ENST00000285879|MAGEC1 ENSG00000155495|ENST00000285879|MAGEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.3412475585938 1 889.342148 888.334872 -0.080967 -7.2007E-05 -1.0347 -0.00092022 -1.1157 -0.00099223 889.3405915835978 67.817 0.33118 61.641 61.438 61.769 -6.1757 26 18 2 0 0 0 0.17994 2 44267 44132;44267 77.984 17.595 1 13424000 11045 6390 7547 7710 12801;12802 12802 -0.11376251020419659 EYTVQQALF 9 Unmodified _EYTVQQALF_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7785034179688 2 549.776939 1097.53933 0.49309 0.00027109 0.99178 0.00054526 1.4849 0.00081635 549.7773733907092 68.256 0.34209 68.256 68.184 68.526 0 42 15 4 0 0 0 0.095405 1 38065 38065 34.102 13.649 1 9584900 11046 543 7548 7711 12803 12803 -0.005542671392504417 EYTVQQALF 9 Unmodified _EYTVQQALF_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.776611328125 2 549.776939 1097.53933 0.25758 0.00014161 0.41192 0.00022646 0.6695 0.00036807 549.7769662498106 68.818 0.28949 68.337 68.264 68.554 -0.48071 22 12 3 0 0 0 0.031062 1 37633 37633 54.774 37.831 1 6280500 11047 543 7548 7711 12804 12804 -0.005542671392504417 EYTVVGIDKL 10 Unmodified _EYTVVGIDKL_ 0 0 0 REV__nc|ENSG00000127311|Q8NG08-2|HELB REV__nc|ENSG00000127311|Q8NG08-2|HELB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.814208984375 2 568.813522 1135.61249 0.92677 0.00052716 -0.13913 -7.9137E-05 0.78765 0.00044802 568.8134446391726 54.234 0.38431 54.234 53.991 54.375 0 35 17 3 0 0 0 0.095098 1 30122 30122 47.749 0 1 7420800 + 11048 19574 7549 7712 12805 12805 0.05010861583377846 EYVADHCSTY 10 Unmodified _EYVADHCSTY_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2359008789062 2 594.237321 1186.46009 -0.45399 -0.00026978 -2.4352 -0.0014471 -2.8892 -0.0017168 594.2358814225677 25.43 0.2048 25.43 25.346 25.55 0 15 9 2 0 0 0 0.69064 1 13060 13060 3.9444 0 1 909060 + 11049 20011 7550 7713 12806 12806 -0.12568282155689303 EYVANLTEL 9 Unmodified _EYVANLTEL_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2688598632812 2 526.268947 1050.52334 0.43917 0.00023112 -0.4156 -0.00021872 0.023564 1.2401E-05 526.2685334782954 65.783 0.38778 65.783 65.55 65.938 0 45 18 3 0 0 0 0.008678 2 36638 36638;36742 88.904 60.417 1 18816000 11050 4023 7551 7714 12807;12808 12807 0.00010026623840531101 EYVDDTQFL 9 Unmodified _EYVDDTQFL_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2572021484375 2 565.256037 1128.49752 0.2849 0.00016104 -0.079928 -4.518E-05 0.20497 0.00011586 565.2560329186657 62.935 0.54531 62.935 62.749 63.295 0 52 22 4 0 0 0 0.07087 1 35070 35070 53.576 36.633 1 7817600 11051 10315 7552 7715 12809 12809 -0.061588676184328506 EYVDDTQFLRF 11 Unmodified _EYVDDTQFLRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.84033203125 2 716.840799 1431.66705 0.23836 0.00017087 -0.17986 -0.00012893 0.058504 4.1938E-05 716.8406095503339 74.372 0.35149 74.372 74.188 74.54 0 51 15 5 0 0 0 0.036614 2 41435 41331;41435 74.2 56.053 1 6699400 11052 10315 7553 7716 12810;12811 12811 -0.03152171335887033 EYVDDTQFLRF 11 Unmodified _EYVDDTQFLRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 716.8409423828125 2 716.840799 1431.66705 0.59207 0.00042442 -0.20115 -0.0001442 0.39092 0.00028023 716.8406322886099 74.868 0.37614 74.392 74.207 74.584 -0.47591 56 15 5 0 0 0 0.018102 2 41030 40925;41030 80.676 70.602 1 16086000 11053 10315 7553 7716 12812;12813 12813 -0.03152171335887033 EYVDDTQFLRF 11 Unmodified _EYVDDTQFLRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 716.841064453125 2 716.840799 1431.66705 0.42321 0.00030337 0.61953 0.0004441 1.0427 0.00074748 717.3419602210959 74.352 0.2943 74.396 74.205 74.499 0.043983 26 12 3 0 0 0 0.25257 1 40996 40996 42.312 26.163 1 2165100 11054 10315 7553 7716 12814 12814 -0.03152171335887033 EYVDDTQFLRF 11 Unmodified _EYVDDTQFLRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000486194.1_1_6:29691304-29692118:+|nuORF nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.8412475585938 2 716.840799 1431.66705 0.73939 0.00053002 0.32243 0.00023113 1.0618 0.00076115 716.8408132672113 83.79 0.79813 77.614 77.27 78.068 -6.1757 111 42 3 0 0 0 4.6798E-15 4 55211 54955;55086;55211;55346 176.43 142.98 1 32844000 11055 10315 7553 7716 12815;12816;12817;12818 12817 -0.03152171335887033 EYVEAVSFQHF 11 Unmodified _EYVEAVSFQHF_ 0 0 0 ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 678.3177490234375 2 678.31696 1354.61937 0.045728 3.1018E-05 0.71964 0.00048815 0.76537 0.00051916 678.3177891392284 61.365 0.18 61.365 61.275 61.455 0 13 7 2 0 0 0 0.0086238 1 34217 34217 69.338 34.406 1 541010 11056 3267 7554 7717 12819 12819 -0.04375825536044431 EYVEAVSFQHF 11 Unmodified _EYVEAVSFQHF_ 0 0 0 ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.8173828125 2 678.31696 1354.61937 0.46502 0.00031543 -0.30884 -0.00020949 0.15618 0.00010594 678.316954785719 61.973 0.18507 61.485 61.407 61.592 -0.48764 20 8 3 0 0 0 0.13335 1 33750 33750 38.615 23.366 1 2105100 11057 3267 7554 7717 12820 12820 -0.04375825536044431 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.2207946777344 3 416.220401 1245.63937 0.53566 0.00022295 0.13125 5.4629E-05 0.66691 0.00027758 416.2204539557962 46.036 0.36969 46.036 45.882 46.252 0 66 17 5 0 0 0 0.069655 2 25088 25088;25206 40.239 25.834 1 68557000 11058 2972 7555 7718 12821;12822 12821 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8269653320312 2 623.826963 1245.63937 0.83119 0.00051852 0.81475 0.00050826 1.6459 0.0010268 623.826810139439 46.046 0.28571 46.046 45.9 46.186 0 26 13 3 0 0 0 0.018061 1 25223 25223 53.833 23.196 1 11413000 11059 2972 7555 7718 12823 12823 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.2205810546875 3 416.220401 1245.63937 0.51608 0.0002148 -0.3117 -0.00012974 0.20438 8.5066E-05 416.22022278614486 46.361 0.54511 46.025 45.84 46.385 -0.33664 83 27 5 0 0 0 0.069655 2 24857 24750;24857 40.239 20.877 1 466210000 11060 2972 7555 7718 12824;12825 12825 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.8269653320312 2 623.826963 1245.63937 0.44319 0.00027648 -0.10171 -6.345E-05 0.34148 0.00021303 623.826634251585 46.361 0.32906 46.025 45.881 46.21 -0.33664 42 16 4 0 0 0 0.0091809 2 24781 24781;24885 92.653 48.795 1 93045000 11061 2972 7555 7718 12826;12827 12826 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2205810546875 3 416.220401 1245.63937 0.51481 0.00021427 1.436 0.00059769 1.9508 0.00081196 416.22131325255924 46.126 0.65086 46.098 45.926 46.577 -0.028011 66 30 5 0 0 0 0.15882 2 24758 24758;24865 27.223 17.073 1 69099000 11062 2972 7555 7718 12828;12829 12828 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.8290405273438 2 623.826963 1245.63937 0.80993 0.00050525 0.773 0.00048222 1.5829 0.00098747 623.8274384059578 46.131 0.24011 46.103 45.948 46.189 -0.028011 26 10 3 0 0 0 0.0084276 1 24776 24776 99.755 55.897 1 11567000 11063 2972 7555 7718 12830 12830 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8263549804688 2 623.826963 1245.63937 0.54726 0.00034139 1.1915 0.00074328 1.7387 0.0010847 623.8269848338311 51.46 0.48519 45.811 45.586 46.071 -5.649 85 29 4 0 0 0 5.1773E-05 2 32281 32281;32407 181.69 85.58 1 543370000 11064 2972 7555 7718 12831;12832 12831 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.2207641601562 3 416.220401 1245.63937 1.0129 0.00042159 0.0034431 1.4331E-06 1.0163 0.00042302 416.2203534652686 51.46 0.51785 45.811 45.586 46.104 -5.649 114 31 5 0 0 0 0.044296 3 32530 32284;32406;32530 47.594 28.232 1 986480000 11065 2972 7555 7718 12833;12834;12835 12835 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5552368164062 3 416.220401 1245.63937 1.1295 0.0004701 0.2974 0.00012378 1.4269 0.00059388 416.22061925400897 54.509 0.62816 48.643 48.401 49.029 -5.8653 55 38 2 0 0 0 0.098164 1 34557 34557 33.445 23.13 1 20205000 11066 2972 7555 7718 12836 12836 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.2208251953125 3 416.220401 1245.63937 1.2508 0.00052059 -0.027536 -1.1461E-05 1.2232 0.00050913 416.22033423696337 57.43 0.51603 51.402 51.201 51.717 -6.0275 74 27 4 0 0 0 0.069655 2 36782 36663;36782 40.239 25.834 1 88321000 11067 2972 7555 7718 12837;12838 12838 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8276977539062 2 623.826963 1245.63937 0.77733 0.00048492 0.06558 4.0911E-05 0.84291 0.00052583 623.8269595777728 57.452 0.40776 51.424 51.258 51.666 -6.0275 44 21 3 0 0 0 0.0010329 2 36718 36718;36847 165.72 80.079 1 43484000 11068 2972 7555 7718 12839;12840 12839 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 416.2208557128906 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 54.671 1 48.806 48.306 49.306 -5.8653 0 0 0 0.12101 1 34706 34706 40.239 20.877 1 11069 2972 7555 7718 12841 12841 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 623.8272094726562 2 623.826963 1245.63937 NaN NaN NaN NaN NaN NaN NaN 54.692 1 48.827 48.327 49.327 -5.8653 0 0 0 0.019227 1 34720 34720 96.367 37.688 1 11070 2972 7555 7718 12842 12842 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 416.2216796875 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 54.866 1 49.001 48.501 49.501 -5.8653 0 0 0 0.097684 1 34854 34854 43.982 24.356 1 11071 2972 7555 7718 12843 12843 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 416.2215270996094 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 55.068 1 49.147 48.647 49.647 -5.9211 0 0 0 0.26013 1 35010 35010 27.223 9.3601 1 11072 2972 7555 7718 12844 12844 0.02637970194564332 EYVEKFYRI 9 Unmodified _EYVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 416.2205505371094 3 416.220401 1245.63937 NaN NaN NaN NaN NaN NaN NaN 55.728 1 49.807 49.307 50.307 -5.9211 0 0 0 0.26013 1 35503 35503 27.223 14.351 1 11073 2972 7555 7718 12845 12845 0.02637970194564332 EYVEVLQEL 9 Unmodified _EYVEVLQEL_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.290283203125 2 561.289879 1120.56521 0.35491 0.00019921 1.0871 0.00061019 1.442 0.0008094 561.2907231710712 77.921 0.15112 77.921 77.833 77.984 0 12 6 2 0 0 0 0.30562 1 43324 43324 16.942 6.8684 1 533800 11074 10287 7556 7719 12846 12846 0.009745823123921582 EYVFCPDVEF 10 Unmodified _EYVFCPDVEF_ 0 0 0 nc|ENSG00000171885|P55087-2|AQP4;ENSG00000171885|ENST00000383168|AQP4 nc|ENSG00000171885|P55087-2|AQP4 nc|ENSG00000171885|P55087-2|AQP4 MSMS AL20221201_MKP_PDAC_01 4 624.268798828125 2 624.26809 1246.52163 NaN NaN NaN NaN NaN NaN NaN 90.706 1 84.53 84.03 85.03 -6.1757 0 0 0 0.83398 1 59929 59929 10.824 2.9138 1 11075 8157 7557 7720 12847 12847 -0.09177350456411659 EYVKFIGNF 9 Unmodified _EYVKFIGNF_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7898559570312 2 558.78985 1115.56515 0.37506 0.00020958 0.44845 0.00025059 0.82351 0.00046017 558.7898366438269 66.484 0.37712 66 65.838 66.216 -0.48323 49 17 4 0 0 0 0.026499 2 36266 36266;36377 71.922 39.617 1 5728300 11076 4646 7558 7721 12848;12849 12848 0.011986271030536955 EYVKFIGNF 9 Unmodified _EYVKFIGNF_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7902221679688 2 558.78985 1115.56515 1.3155 0.00073511 1.2263 0.00068523 2.5418 0.0014203 558.7902633342768 66.168 0.60265 66.177 65.835 66.438 0.0095596 79 30 3 0 0 0 0.029718 1 36167 36167 71.134 45.734 1 20917000 11077 4646 7558 7721 12850 12850 0.011986271030536955 EYVKFIGNF 9 Unmodified _EYVKFIGNF_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2927856445312 2 558.78985 1115.56515 1.0646 0.00059492 1.258 0.00070297 2.3227 0.0012979 559.291750365505 75.369 2.1683 69.193 67.548 69.717 -6.1757 258 114 3 0 0 0 0.091924 4 49340 49216;49340;49478;49602 46.021 25.442 1 28915000 11078 4646 7558 7721 12851;12852;12853;12854 12852 0.011986271030536955 EYVKFLHKF 9 Unmodified _EYVKFLHKF_ 0 0 0 nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506 nc|ENSG00000081665|Q5JVG8-2|ZNF506 nc|ENSG00000081665|Q5JVG8-2|ZNF506 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5599365234375 3 404.225486 1209.65463 -0.31778 -0.00012845 -0.22783 -9.2094E-05 -0.54561 -0.00022055 404.2253742566091 41.933 0.26891 41.924 41.773 42.042 -0.0088196 26 12 3 0 0 0 0.12424 1 22405 22405 28.495 18.951 1 21152000 11079 1326 7559 7722 12855 12855 0.058188817823975114 EYVKGVPLI 9 Unmodified _EYVKGVPLI_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.3037109375 2 509.302593 1016.59063 0.60712 0.00030921 1.0561 0.00053788 1.6632 0.00084709 509.303382991663 60.895 0.28082 60.895 60.743 61.024 0 18 11 2 0 0 0 0.039985 1 33952 33952 49.933 7.8384 1 2022600 11080 9829;10450;9920 7560 7723 12856 12856 0.08300101625468415 EYVKGVPLI 9 Unmodified _EYVKGVPLI_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7715454101562 2 509.302593 1016.59063 0.43466 0.00022137 1.0557 0.00053767 1.4904 0.00075904 509.3031534311998 66.885 0.39022 60.709 60.519 60.91 -6.1757 26 21 2 0 0 0 0.16895 1 43606 43606 13.042 0 1 7631200 11081 9829;10450;9920 7560 7723 12857 12857 0.08300101625468415 EYVKGVPLI 9 Unmodified _EYVKGVPLI_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;ENST00000567998.5_1_16:28620023-28620143:-|nuORF;ENST00000569409.1_1_16:30212049-30212202:+|nuORF;ENST00000561824.5_1_16:30212049-30214087:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.302593 1016.59063 -0.50445 -0.00025692 0.54882 0.00027951 0.04437 2.2598E-05 509.3028806395072 61.285 0.26902 60.796 60.694 60.963 -0.48932 -0.0043194 -0.00036464 NaN 49.933 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1500800 11082 9829;10450;9920 7560 7723 0.08300101625468415 EYVLTQQGF 9 Unmodified _EYVLTQQGF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7686157226562 2 542.769114 1083.52368 0.40659 0.00022068 -0.13065 -7.0913E-05 0.27594 0.00014977 542.7688999725177 57.979 0.28587 57.979 57.845 58.131 0 26 11 3 0 0 0 0.078417 1 32280 32280 38.151 23.569 1 3313500 11083 10212 7561 7724 12858 12858 -0.014745536562713824 EYVLTQQGF 9 Unmodified _EYVLTQQGF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.769114 1083.52368 0.063633 3.4538E-05 1.9572 0.0010623 2.0209 0.0010969 542.7689532758832 58.558 0.061359 58.067 58.028 58.09 -0.49079 0.044176 0.0022079 NaN 38.151 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 686990 11084 10212 7561 7724 -0.014745536562713824 EYVLULIHG 9 Unmodified _EYVLULIHG_ 0 0 0 REV__nc|ENSG00000211448|Q92813-3|DIO2 REV__nc|ENSG00000211448|Q92813-3|DIO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.742919921875 2 547.742828 1093.4711 NaN NaN NaN NaN NaN NaN NaN 14.279 1 14.248 13.748 14.748 -0.030868 0 0 0 0.8622 1 6933 6933 0 0 0 + 11085 29920 7562 7725 12859 12859 -0.07189335554198806 EYVMKWYFRWR 11 Unmodified _EYVMKWYFRWR_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 832.4147338867188 2 832.413746 1662.81294 NaN NaN NaN NaN NaN NaN NaN 88.129 1 88.129 87.629 88.629 0 0 0 0 0.9435 1 48787 48787 0 0 1 + 11086 24262 7563 7726 12860 12860 0.008044326991694106 EYVMKWYFRWR 11 Unmodified _EYVMKWYFRWR_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.4108276367188 2 832.413746 1662.81294 NaN NaN NaN NaN NaN NaN NaN 85.609 1 85.671 85.171 86.171 0.061638 0 0 0 0.94338 1 47390 47390 0.30703 0.30703 1 + 11087 24262 7563 7726 12861 12861 0.008044326991694106 EYVNDFDLLKF 11 Unmodified _EYVNDFDLLKF_ 0 0 0 ENSG00000204103|ENST00000373313|MAFB ENSG00000204103|ENST00000373313|MAFB ENSG00000204103|ENST00000373313|MAFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 702.3551025390625 2 701.848093 1401.68163 0.36324 0.00025494 -0.065726 -4.6129E-05 0.29751 0.00020881 701.8482605247113 89.069 0.29152 88.564 88.416 88.707 -0.50423 24 12 3 0 0 0 0.72131 1 48684 48684 4.897 3.5675 1 757290 11088 10241 7564 7727 12862 12862 -0.0031409918772169476 EYVNDFDLMKF 11 Unmodified _EYVNDFDLMKF_ 0 0 0 ENSG00000129535|ENST00000561028|NRL;ENSG00000182759|ENST00000333480|MAFA;nc|ENSG00000178573|O75444|MAF;ENSG00000178573|ENST00000326043|MAF ENSG00000129535|ENST00000561028|NRL ENSG00000129535|ENST00000561028|NRL MSMS AL20221201_MKP_PDAC_01 4 710.827392578125 2 710.826303 1419.63805 NaN NaN NaN NaN NaN NaN NaN 94.626 1 88.451 87.951 88.951 -6.1757 0 0 0 0.14006 1 62675 62675 61.09 40.675 1 11089 4149 7565 7728 12863 12863 -0.05498031956540217 EYVNRCLFI 9 Carbamidomethyl (C) _EYVNRC(Carbamidomethyl (C))LFI_ EYVNRC(1)LFI EYVNRC(82)LFI 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.306396484375 2 607.305341 1212.59613 0.34339 0.00020854 1.078 0.00065466 1.4214 0.00086321 607.3063416719921 66.381 0.46331 60.205 59.992 60.455 -6.1757 65 25 3 0 0 0 0.009483 2 43224 43102;43224 81.89 47.788 1 32145000 11090 8367 7566 7729 12864;12865 12865 808 -0.0016654285439017258 EYVPEIVNF 9 Unmodified _EYVPEIVNF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2802734375 2 555.279315 1108.54408 0.47117 0.00026163 0.12636 7.0168E-05 0.59753 0.0003318 555.2796779688737 80.75 0.73795 80.75 80.544 81.281 0 80 35 3 0 0 0 0.047196 2 44877 44778;44877 46.021 24.274 1 7671400 11091 2727 7567 7730 12866;12867 12867 -0.005853829964962642 EYVPEIVNF 9 Unmodified _EYVPEIVNF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.279541015625 2 555.279315 1108.54408 0.98383 0.0005463 -2.1009 -0.0011666 -1.117 -0.00062026 555.2788207735731 81.285 0.73074 80.793 80.641 81.372 -0.49247 53 36 2 0 0 0 0.2001 1 44574 44574 23.148 11.508 1 4979500 11092 2727 7567 7730 12868 12868 -0.005853829964962642 EYVPEIVNF 9 Unmodified _EYVPEIVNF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.280029296875 2 555.279315 1108.54408 1.0955 0.00060828 -1.2496 -0.00069388 -0.15415 -8.5594E-05 555.2792190338508 88.753 0.80109 82.577 82.168 82.969 -6.1757 82 44 3 0 0 0 0.03568 2 58662 58532;58662 52.268 31.815 1 43927000 11093 2727 7567 7730 12869;12870 12870 -0.005853829964962642 EYVPETEKH 9 Unmodified _EYVPETEKH_ 0 0 0 REV__ENSG00000162086|ENST00000669516|ZNF75A REV__ENSG00000162086|ENST00000669516|ZNF75A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2708129882812 2 566.269478 1130.5244 0.30701 0.00017385 1.9503 0.0011044 2.2573 0.0012783 566.2704310857264 80.771 0.27032 80.771 80.592 80.862 0 21 13 2 0 0 0 0.47846 1 44805 44805 8.7454 2.0222 1 440920 + 11094 21624 7568 7731 12871 12871 -0.03563759007238332 EYVPETEKH 9 Unmodified _EYVPETEKH_ 0 0 0 REV__ENSG00000162086|ENST00000669516|ZNF75A REV__ENSG00000162086|ENST00000669516|ZNF75A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 566.269478 1130.5244 0.30701 0.00017385 1.9503 0.0011044 2.2573 0.0012783 566.2704310857264 80.771 0.27032 80.771 80.592 80.862 0 -0.016247 0.00048741 NaN 8.7454 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 440920 + 11095 21624 7568 7731 -0.03563759007238332 EYVPETEKH 9 Unmodified _EYVPETEKH_ 0 0 0 REV__ENSG00000162086|ENST00000669516|ZNF75A REV__ENSG00000162086|ENST00000669516|ZNF75A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 566.269478 1130.5244 0.93797 0.00053115 0.41126 0.00023289 1.3492 0.00076403 566.2699873871428 81.296 0.18266 80.803 80.75 80.932 -0.49247 0.016247 -0.0012556 NaN 8.7454 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 533300 + 11096 21624 7568 7731 -0.03563759007238332 EYVRALFDF 9 Unmodified _EYVRALFDF_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK;CRK|p.A134V|1|0.23|ENSG00000167193|chr17:1436996-1436996|G/A|missense_variant ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2921752929688 2 580.292756 1158.57096 0.86645 0.0005028 -0.55144 -0.00032 0.31502 0.0001828 580.2920860352041 79.429 0.6731 78.94 78.704 79.377 -0.48933 42 29 2 0 0 0 0.07087 1 43455 43455 39.95 15.929 1 1442000 11097 7583 7569 7732 12872 12872 -0.0019827438529773644 EYVRALFDF 9 Unmodified _EYVRALFDF_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK;CRK|p.A134V|1|0.23|ENSG00000167193|chr17:1436996-1436996|G/A|missense_variant ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.29248046875 2 580.292756 1158.57096 1.1579 0.0006719 -0.61339 -0.00035594 0.54447 0.00031595 580.2926407516409 96.979 0.27278 90.804 90.638 90.911 -6.1757 37 15 3 0 0 0 0.0088668 2 64330 64209;64330 87.258 43.4 1 52349000 11098 7583 7569 7732 12873;12874 12874 -0.0019827438529773644 EYVRALFDF 9 Unmodified _EYVRALFDF_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK;CRK|p.A134V|1|0.23|ENSG00000167193|chr17:1436996-1436996|G/A|missense_variant ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 580.292756 1158.57096 0.82455 0.00047848 -0.24868 -0.00014431 0.57587 0.00033417 580.292467179142 78.786 0.30789 78.84 78.707 79.015 0.054977 -0.049597 0.00018043 NaN 39.95 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3645400 11099 7583 7569 7732 -0.0019827438529773644 EYVRAVYRM 9 Unmodified _EYVRAVYRM_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2061767578125 3 396.206098 1185.59646 1.0374 0.00041103 -0.80926 -0.00032063 0.22815 9.0393E-05 396.2058219447356 38.136 0.44777 33.767 33.597 34.045 -4.3689 46 26 2 0 0 0 0.024882 1 22414 22414 45.74 34.841 1 14407000 11100 5700 7570 7733 12875 12875 0.01108876865464481 EYVRAVYRM 9 Unmodified _EYVRAVYRM_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000507209.5_1_4:187118658-187122526:+|nuORF ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 396.206098 1185.59646 -0.23419 -9.2789E-05 0.39264 0.00015556 0.15844 6.2776E-05 396.2063679886035 34.046 0.096542 33.854 33.82 33.917 -0.19131 0.043527 0.001271 NaN 45.74 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 642750 11101 5700 7570 7733 0.01108876865464481 EYVRDHPQF 9 Unmodified _EYVRDHPQF_ 0 0 0 ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;FASTKD1|p.A397Cfs*4|1|0.27|ENSG00000138399|chr2:169555149-169555150|-/A|frameshift_variant ENSG00000138399|ENST00000453153|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5248718261719 3 397.524484 1189.55162 -0.82253 -0.00032698 0.65625 0.00026088 -0.16628 -6.61E-05 397.5247331059564 28.308 0.19736 28.308 28.189 28.387 0 19 9 3 0 0 0 0.2546 1 14607 14607 19.362 4.4048 1 3150000 11102 5049 7571 7734 12876 12876 -0.035572306762105654 EYVRDLPVL 9 Unmodified _EYVRDLPVL_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.30908203125 2 552.308406 1102.60226 0.33088 0.00018275 -0.64008 -0.00035352 -0.3092 -0.00017077 552.3081434332324 62.039 0.32088 62.039 61.885 62.206 0 32 13 3 0 0 0 0.06294 2 34558 34558;34669 41.84 22.583 1 5224400 11103 10134 7572 7735 12877;12878 12877 0.05506298648788288 EYVRDLPVL 9 Unmodified _EYVRDLPVL_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.310302734375 2 552.308406 1102.60226 NaN NaN NaN NaN NaN NaN NaN 62.506 1 62.018 61.518 62.518 -0.48764 0 0 0 0.15549 1 34061 34061 36.127 7.6402 1 11104 10134 7572 7735 12879 12879 0.05506298648788288 EYVRLVTEF 9 Unmodified _EYVRLVTEF_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.306640625 2 578.305864 1154.59717 0.28691 0.00016592 0.30889 0.00017864 0.59581 0.00034456 578.3059405234724 62.964 0.3477 62.964 62.823 63.17 0 27 14 3 0 0 0 0.010301 1 35137 35137 79.596 54.197 1 1259300 11105 5301 7573 7736 12880 12880 0.02605994786199517 EYVRLVTEF 9 Unmodified _EYVRLVTEF_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3063354492188 2 578.305864 1154.59717 0.35247 0.00020384 0.81687 0.0004724 1.1693 0.00067624 578.306361408355 63.489 0.33256 63.003 62.816 63.149 -0.48617 34 14 3 0 0 0 0.015688 2 34582 34582;34692 67.838 42.439 1 4319300 11106 5301 7573 7736 12881;12882 12881 0.02605994786199517 EYVRNQQTI 9 Unmodified _EYVRNQQTI_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7969970703125 2 575.796195 1149.57784 -0.060184 -3.4654E-05 0.39874 0.0002296 0.33856 0.00019494 575.7963581380872 24.03 0.22381 24.03 23.915 24.138 0 23 10 3 0 0 0 0.0087399 1 12253 12253 96.367 42.534 1 3234700 11107 1340 7574 7737 12883 12883 0.009030384952893655 EYVRNQQTI 9 Unmodified _EYVRNQQTI_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;nc|ENSG00000082153|Q7L1Q6-2|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7952880859375 2 575.796195 1149.57784 0.51858 0.0002986 0.072723 4.1874E-05 0.5913 0.00034047 575.7957511177476 27.385 0.25684 24.348 24.239 24.496 -3.0365 16 12 2 0 0 0 0.0047912 1 15189 15189 129.77 47.882 1 12593000 11108 1340 7574 7737 12884 12884 0.009030384952893655 EYVRTLYDF 9 Unmodified _EYVRTLYDF_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.29638671875 2 603.295496 1204.57644 0.13426 8.0997E-05 0.083814 5.0564E-05 0.21807 0.00013156 603.2960276829582 59.645 0.18317 59.645 59.532 59.716 0 11 7 2 0 0 0 0.028475 2 33257 33179;33257 56.177 28.548 1 1002600 11109 1723 7575 7738 12885;12886 12886 -0.017665955934717203 EYVRTLYDF 9 Unmodified _EYVRTLYDF_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.797119140625 2 603.295496 1204.57644 0.081557 4.9203E-05 0.17988 0.00010852 0.26144 0.00015772 603.7968566575844 60.196 0.13334 59.706 59.652 59.786 -0.49079 10 6 2 0 0 0 0.011291 1 32777 32777 76.825 42.423 1 2607700 11110 1723 7575 7738 12887 12887 -0.017665955934717203 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2870483398438 2 583.285463 1164.55637 -0.51119 -0.00029817 0.71749 0.0004185 0.2063 0.00012033 583.2858864441091 34.648 0.31079 34.648 34.442 34.753 0 45 15 4 0 0 0 0.017075 1 18233 18233 66.457 42.436 1 19690000 11111 2379 7576 7739 12888 12888 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1929016113281 3 389.192734 1164.55637 -0.62374 -0.00024275 0.49924 0.0001943 -0.1245 -4.8453E-05 389.1929431664485 34.648 0.31549 34.648 34.478 34.793 0 54 15 5 0 0 0 0.094149 2 18236 18236;18347 32.037 24.092 1 62680000 11112 2379 7576 7739 12889;12890 12889 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1918334960938 3 389.192734 1164.55637 -0.27998 -0.00010897 0.17812 6.9325E-05 -0.10186 -3.9642E-05 389.192735337556 34.807 0.22292 34.615 34.477 34.7 -0.19131 25 9 4 0 0 0 0.06294 1 18194 18194 38.615 30.669 1 6629100 11113 2379 7576 7739 12891 12891 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2861938476562 2 583.285463 1164.55637 -0.35904 -0.00020942 0.82982 0.00048402 0.47078 0.0002746 583.2861676829084 34.81 0.15944 34.619 34.518 34.677 -0.19131 11 6 2 0 0 0 0.025842 1 18214 18214 57.722 27.497 1 2311700 11114 2379 7576 7739 12892 12892 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.1937255859375 3 389.192734 1164.55637 1.2262 0.00047723 -0.16183 -6.2984E-05 1.0644 0.00041424 389.19273733145644 39.168 0.45797 34.718 34.506 34.964 -4.4509 85 28 4 0 0 0 0.15471 2 23100 23100;23234 26.021 18.075 1 119640000 11115 2379 7576 7739 12893;12894 12893 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.286865234375 2 583.285463 1164.55637 0.85976 0.00050149 1.1094 0.0006471 1.9692 0.0011486 583.2862729568893 39.15 0.40783 34.699 34.538 34.946 -4.4509 65 25 3 0 0 0 0.00030554 2 23145 23145;23279 148.27 110.09 1 44472000 11116 2379 7576 7739 12895;12896 12895 -0.01932346533430973 EYVRVSEHF 9 Unmodified _EYVRVSEHF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.192734 1164.55637 0.0027562 1.0727E-06 0.18948 7.3745E-05 0.19224 7.4818E-05 389.1929540970464 34.577 0.16805 34.604 34.5 34.668 0.027401 -0.041963 -9.399E-05 NaN 38.615 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1129700 11117 2379 7576 7739 -0.01932346533430973 EYVSQHLVF 9 Unmodified _EYVSQHLVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2852783203125 2 561.284931 1120.55531 -0.20184 -0.00011329 0.32896 0.00018464 0.12712 7.1351E-05 561.2847688962548 55.973 0.3479 55.973 55.836 56.184 0 47 18 4 0 0 0 0.010611 2 31198 31081;31198 78.728 44.626 1 51227000 11118 4070 7577 7740 12897;12898 12898 -0.00014560902332050318 EYVSQHLVF 9 Unmodified _EYVSQHLVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.285888671875 2 561.284931 1120.55531 -0.5319 -0.00029855 0.0096922 5.4401E-06 -0.52221 -0.00029311 561.2849039150959 56.494 0.526 56.008 55.843 56.369 -0.48554 81 36 3 0 0 0 0.05447 2 30626 30626;30730 43.858 22.112 1 63080000 11119 4070 7577 7740 12899;12900 12899 -0.00014560902332050318 EYVSQHLVF 9 Unmodified _EYVSQHLVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2844848632812 2 561.284931 1120.55531 -0.026674 -1.4971E-05 0.49394 0.00027724 0.46727 0.00026227 561.2851588335361 56.104 0.23225 56.036 55.942 56.174 -0.068737 18 11 2 0 0 0 0.19127 1 30496 30496 24.021 5.8742 1 3495800 11120 4070 7577 7740 12901 12901 -0.00014560902332050318 EYVSQHLVF 9 Unmodified _EYVSQHLVF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2853393554688 2 561.284931 1120.55531 0.66646 0.00037407 -0.41809 -0.00023467 0.24836 0.0001394 561.2846922570427 62.134 0.78328 55.958 55.499 56.283 -6.1757 114 43 3 0 0 0 0.039985 3 40120 39989;40120;40263 49.933 28.186 1 397840000 11121 4070 7577 7740 12902;12903;12904 12903 -0.00014560902332050318 EYVTTLDMSM 10 Unmodified _EYVTTLDMSM_ 0 0 0 REV__ENST00000217515.10_2_18:54283496-54285305:-|nuORF REV__ENST00000217515.10_2_18:54283496-54285305:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2589721679688 2 595.259407 1188.50426 -0.74979 -0.00044632 0.098081 5.8383E-05 -0.65171 -0.00038794 595.2599247015997 55.562 0.41535 55.562 55.327 55.742 0 99 30 5 0 0 0 0.33553 1 30784 30784 25.399 9.5521 1 83355000 + 11122 24749 7578 7741 12905 12905 -0.0824501405375031 EYVTTLDMSM 10 Unmodified _EYVTTLDMSM_ 0 0 0 REV__ENST00000217515.10_2_18:54283496-54285305:-|nuORF REV__ENST00000217515.10_2_18:54283496-54285305:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2587890625 2 595.259407 1188.50426 -0.6429 -0.00038269 -0.099432 -5.9188E-05 -0.74233 -0.00044188 595.2593626456434 56.176 0.23217 55.691 55.573 55.805 -0.48554 17 11 2 0 0 0 0.42068 1 30473 30473 20.454 5.8719 1 6432900 + 11123 24749 7578 7741 12906 12906 -0.0824501405375031 EYVVRTFTL 9 Unmodified _EYVVRTFTL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2720947265625 2 564.308406 1126.60226 0.28899 0.00016308 -1.5005 -0.00084676 -1.2115 -0.00068369 564.3073222892375 63.051 0.22572 63.051 62.87 63.096 0 17 9 2 0 0 0 0.20358 1 35194 35194 10.074 2.1638 1 1470700 11124 6218 7579 7742 12907 12907 0.04402298648801661 EYVVRTFTL 9 Unmodified _EYVVRTFTL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3087768554688 2 564.308406 1126.60226 0.46204 0.00026074 0.91568 0.00051673 1.3777 0.00077746 564.308705158884 63.468 0.52388 62.981 62.771 63.295 -0.48617 63 23 4 0 0 0 0.0074135 2 34653 34546;34653 110.67 62.926 1 29571000 11125 6218 7579 7742 12908;12909 12909 0.04402298648801661 EYVVRTFTL 9 Unmodified _EYVVRTFTL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3088989257812 2 564.308406 1126.60226 0.67169 0.00037904 -1.7914 -0.0010109 -1.1198 -0.00063189 564.3073980619629 63.056 0.22113 63.034 62.888 63.109 -0.021614 23 10 3 0 0 0 0.0090524 1 34470 34470 85.642 49.514 1 5770600 11126 6218 7579 7742 12910 12910 0.04402298648801661 EYVVRTFTL 9 Unmodified _EYVVRTFTL_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3093872070312 2 564.308406 1126.60226 1.0983 0.00061978 -0.1912 -0.0001079 0.90709 0.00051188 564.3082222719326 70.302 0.49839 64.126 63.928 64.427 -6.1757 48 27 2 0 0 0 0.012668 2 45899 45899;46033 72.968 6.5113 1 30116000 11127 6218 7579 7742 12911;12912 12911 0.04402298648801661 EYVVVPSTF 9 Unmodified _EYVVVPSTF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2511596679688 2 520.768583 1039.52261 0.12621 6.5727E-05 -1.6133 -0.00084016 -1.4871 -0.00077443 520.7665396471223 70.65 0.23295 70.65 70.474 70.707 0 12 9 2 0 0 0 0.12183 1 39349 39349 34.102 19.521 1 516300 11128 486 7580 7743 12913 12913 0.00443231974804803 EYVYSGGKHE 10 Unmodified _EYVYSGGKHE_ 0 0 0 REV__nc|ENSG00000090686|Q86UV5-3|USP48 REV__nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.2672729492188 2 584.767103 1167.51965 1.0756 0.00062899 -2.2655 -0.0013248 -1.1899 -0.00069583 585.2673855930796 57.182 0.1833 57.116 57.018 57.201 -0.066036 11 8 2 0 0 0 0.65773 1 31139 31139 7.609 0.31972 1 2417500 + 11129 17869 7581 7744 12914 12914 -0.057406431499885 EYWDEDAP 8 Unmodified _EYWDEDAP_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1024.0400390625 1 1024.38943 1023.38216 -0.80088 -0.00082041 1.2878 0.0013192 0.48693 0.00049881 1025.3925641040018 44.906 0.20765 44.906 44.847 45.055 0 12 10 2 0 0 0 8.7369 1 24511 24511 0.79363 0 1 19963000 11130 1684 7582 7745 12915 12915 -0.12859971749423948 EYWILVSVS 9 Unmodified _EYWILVSVS_ 0 0 0 ENST00000448238.2_2_5:37022478-37024717:+|nuORF ENST00000448238.2_2_5:37022478-37024717:+|nuORF ENST00000448238.2_2_5:37022478-37024717:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8628845214844 3 365.862214 1094.56481 NaN NaN NaN NaN NaN NaN NaN 35.638 1 35.663 35.163 36.163 0.024967 0 0 0 0.82739 1 18852 18852 2.4985 0 1 11131 13490 7583 7746 12916 12916 0.02131207383195033 EYWLYQDLY 9 Unmodified _EYWLYQDLY_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.7930908203125 2 646.795329 1291.5761 -0.11287 -7.3004E-05 -2.0626 -0.0013341 -2.1754 -0.0014071 647.2955394528126 61.811 0.22279 61.811 61.663 61.885 0 17 9 2 0 0 0 0.43463 1 34430 34430 10.824 1.4408 1 1783800 + 11132 22776 7584 7747 12917 12917 -0.05802015313315678 EYWLYQDLY 9 Unmodified _EYWLYQDLY_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 646.795329 1291.5761 -0.11287 -7.3004E-05 -2.0626 -0.0013341 -2.1754 -0.0014071 647.2955394528126 61.811 0.22279 61.811 61.663 61.885 0 0.0024403 -6.0736E-05 NaN 10.824 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1783800 + 11133 22776 7584 7747 -0.05802015313315678 EYWLYQDLY 9 Unmodified _EYWLYQDLY_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 646.795329 1291.5761 0.60853 0.00039359 -1.8783 -0.0012149 -1.2698 -0.00082131 646.7948972705839 62.293 0.23417 61.806 61.681 61.915 -0.48764 -0.0024403 0.00017759 NaN 10.824 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1507200 + 11134 22776 7584 7747 -0.05802015313315678 EYWPEEQVAY 10 Unmodified _EYWPEEQVAY_ 0 0 0 nc|ENSG00000110786|P54829-2|PTPN5;nc|ENSG00000110786|P54829-3|PTPN5;ENSG00000110786|ENST00000358540|PTPN5 nc|ENSG00000110786|P54829-2|PTPN5 nc|ENSG00000110786|P54829-2|PTPN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.8615417480469 3 438.527671 1312.56118 0.054304 2.3814E-05 -2.4611 -0.0010793 -2.4068 -0.0010554 438.5265411339876 42.533 0.19817 42.226 42.162 42.36 -0.30682 19 9 3 0 0 0 0.54684 1 22604 22604 8.4443 0.96724 1 11307000 11135 2741 7585 7748 12918 12918 -0.08259507181310255 EYWRRREEEER 11 Unmodified _EYWRRREEEER_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS AL20221201_MKP_PDAC_01 4 819.3890991210938 2 819.392584 1636.77062 NaN NaN NaN NaN NaN NaN NaN 99.661 1 93.486 92.986 93.986 -6.1757 0 0 0 0.94184 1 66437 66437 1.1933 1.1933 1 11136 783 7586 7749 12919 12919 -0.02229871175450171 EYWYFLNY 8 Unmodified _EYWYFLNY_ 0 0 0 REV__ENSG00000123496|ENST00000243213|IL13RA2 REV__ENSG00000123496|ENST00000243213|IL13RA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2698364257812 2 599.266207 1196.51786 -0.19694 -0.00011802 1.0662 0.00063895 0.86928 0.00052093 599.2676807986446 44.14 0.26174 44.14 44.023 44.284 0 31 13 3 0 0 0 0.67481 1 23981 23981 19.439 0.18201 1 20649000 + 11137 19390 7587 7750 12920 12920 -0.07253652167923974 EYYDHLPEL 9 Unmodified _EYYDHLPEL_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;ENST00000471359.1_1_20:25274602-25277155:+|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7720947265625 2 589.771854 1177.52915 0.36483 0.00021516 -2.295 -0.0013535 -1.9301 -0.0011383 589.7712497758346 60.812 0.50959 60.812 60.514 61.024 0 49 18 4 0 0 0 0.023164 1 33913 33913 60.39 16.617 1 2612300 11138 1900 7588 7751 12921 12921 -0.05250874864486832 EYYDKAFDRI 10 Unmodified _EYYDKAFDRI_ 0 0 0 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.546630859375 3 440.547065 1318.61937 0.074426 3.2788E-05 0.018339 8.0792E-06 0.092765 4.0867E-05 440.54689122980403 44.234 0.17336 44.234 44.111 44.284 0 18 8 3 0 0 0 0.41822 1 24060 24060 14.171 0 1 9014900 11139 1804 7589 7752 12922 12922 -0.027198255360644907 EYYDKAFDRI 10 Unmodified _EYYDKAFDRI_ 0 0 0 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.5481262207031 3 440.547065 1318.61937 1.017 0.00044803 0.23875 0.00010518 1.2557 0.00055322 440.54701070977916 49.802 0.31361 44.263 44.094 44.408 -5.5391 29 19 2 0 0 0 0.06987 1 31097 31097 46.475 34.3 1 24970000 11140 1804 7589 7752 12923 12923 -0.027198255360644907 EYYDKHFTEF 10 Unmodified _EYYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.3040771484375 2 689.801143 1377.58773 -0.19998 -0.00013794 0.43911 0.0003029 0.23913 0.00016495 690.3033738425484 43.961 0.19041 43.961 43.88 44.07 0 18 11 2 0 0 0 0.00089066 1 23909 23909 114.2 76.026 1 29612000 11141 3048 7590 7753 12924 12924 -0.08595818290018542 EYYDKHFTEF 10 Unmodified _EYYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.8016357421875 2 689.801143 1377.58773 NaN NaN NaN NaN NaN NaN NaN 44.257 1 43.942 43.442 44.442 -0.31585 0 0 0 0.00085346 1 23602 23602 110.55 89.016 1 11142 3048 7590 7753 12925 12925 -0.08595818290018542 EYYDKHFTEF 10 Unmodified _EYYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.302490234375 2 689.801143 1377.58773 0.98471 0.00067925 -0.63698 -0.00043939 0.34772 0.00023986 689.8007227029212 49.482 0.40774 44.086 43.918 44.326 -5.3961 67 25 3 0 0 0 0.0021808 2 30864 30864;30991 107.56 79.069 1 141570000 11143 3048 7590 7753 12926;12927 12926 -0.08595818290018542 EYYEILLETF 10 Unmodified _EYYEILLETF_ 0 0 0 REV__ENSG00000241484|ENST00000356099|ARHGAP8 REV__ENSG00000241484|ENST00000356099|ARHGAP8 MSMS AL20221201_MKP_PDAC_01 4 660.323486328125 2 660.323919 1318.63329 NaN NaN NaN NaN NaN NaN NaN 49.678 1 44.138 43.638 44.638 -5.5391 0 0 0 0.54588 1 31061 31061 24.021 5.8742 1 + 11144 24452 7591 7754 12928 12928 -0.013285928276218328 EYYEPHTLPF 10 Unmodified _EYYEPHTLPF_ 0 0 0 REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.5360717773438 3 432.536278 1294.587 -0.045953 -1.9876E-05 -0.90704 -0.00039233 -0.95299 -0.0004122 432.53590512667006 39.271 0.19841 38.984 38.861 39.059 -0.28687 21 9 3 0 0 0 0.70951 1 20704 20704 0.77653 0 1 5467700 + 11145 27013 7592 7755 12929 12929 -0.04850612939048915 EYYEPHTLPF 10 Unmodified _EYYEPHTLPF_ 0 0 0 REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 432.536278 1294.587 -0.045953 -1.9876E-05 -0.90704 -0.00039233 -0.95299 -0.0004122 432.53590512667006 39.271 0.19841 38.984 38.861 39.059 -0.28687 0.059855 5.4127E-05 NaN 0.77653 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 5467700 + 11146 27013 7592 7755 -0.04850612939048915 EYYEPHTLPF 10 Unmodified _EYYEPHTLPF_ 0 0 0 REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF REV__ENST00000434820.1_1_2:17566863-17567166:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 432.536278 1294.587 0.34414 0.00014885 -1.0179 -0.00044028 -0.67378 -0.00029143 432.5359929392985 38.853 0.16099 38.864 38.801 38.962 0.011452 -0.059855 -8.9746E-05 NaN 0.77653 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2892200 + 11147 27013 7592 7755 -0.04850612939048915 EYYGDIFVTI 10 Unmodified _EYYGDIFVTI_ 0 0 0 REV__ENSG00000085998|ENST00000371984|POMGNT1 REV__ENSG00000085998|ENST00000371984|POMGNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7986450195312 2 610.297704 1218.58086 0.10975 6.6978E-05 -0.18747 -0.00011441 -0.07772 -4.7432E-05 610.2976868258572 80.001 0.20332 80.001 79.864 80.067 0 15 10 2 0 0 0 0.69064 1 44403 44403 3.9444 0 1 785010 + 11148 17760 7593 7756 12930 12930 -0.019691311705628323 EYYHNVESER 10 Unmodified _EYYHNVESER_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.53076171875 3 442.530074 1324.56839 -0.3008 -0.00013311 1.4126 0.00062514 1.1118 0.00049203 442.5309166341954 33.889 0.34388 33.697 33.521 33.865 -0.19131 46 13 5 0 0 0 0.46514 1 17659 17659 11.518 1.7536 1 20821000 + 11149 17457 7594 7757 12931 12931 -0.08090774580887228 EYYHNVESER 10 Unmodified _EYYHNVESER_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 442.530074 1324.56839 -0.31909 -0.00014121 0.74255 0.0003286 0.42345 0.00018739 442.86466286515343 33.758 0.11618 33.758 33.688 33.804 0 0.056108 -0.00037827 NaN 11.518 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1562800 + 11150 17457 7594 7757 -0.08090774580887228 EYYHNVESER 10 Unmodified _EYYHNVESER_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 442.530074 1324.56839 -0.3008 -0.00013311 1.4126 0.00062514 1.1118 0.00049203 442.5309166341954 33.889 0.34388 33.697 33.521 33.865 -0.19131 -0.0047826 0.00051135 NaN 11.518 46 13 5 NaN NaN NaN NaN 0 NaN NaN 0 20821000 + 11151 17457 7594 7757 -0.08090774580887228 EYYHNVESER 10 Unmodified _EYYHNVESER_ 0 0 0 REV__ENSG00000069956|ENST00000261845|MAPK6 REV__ENSG00000069956|ENST00000261845|MAPK6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 442.530074 1324.56839 0.37386 0.00016545 0.093516 4.1384E-05 0.46738 0.00020683 442.53033483807235 33.622 0.19751 33.651 33.523 33.72 0.028934 -0.051326 -0.0012399 NaN 11.518 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 4273100 + 11152 17457 7594 7757 -0.08090774580887228 EYYKEYQQRY 10 Unmodified _EYYKEYQQRY_ 0 0 0 REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608 REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.5638427734375 3 490.561375 1468.66229 -0.17289 -8.4813E-05 1.5551 0.00076286 1.3822 0.00067804 490.8959219539282 35.4 0.081638 35.4 35.36 35.442 0 6 3 2 0 0 0 0.70895 1 18696 18696 1.9064 0.45126 1 2359400 + 11153 22359 7595 7758 12932 12932 -0.05329055478614464 EYYLYKFRHSP 11 Unmodified _EYYLYKFRHSP_ 0 0 0 ENSG00000113048|ENST00000261413|MRPS27 ENSG00000113048|ENST00000261413|MRPS27 ENSG00000113048|ENST00000261413|MRPS27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.5858459472656 3 501.585743 1501.7354 -0.16011 -8.0309E-05 -0.64043 -0.00032123 -0.80054 -0.00040154 501.5857284621302 18.953 0.21675 18.953 18.843 19.06 0 69 18 5 0 0 0 0.71341 1 9428 9428 1.2148 0.20126 1 8370900 11154 2939 7596 7759 12933 12933 0.004601180346298861 EYYRGFTLF 9 Unmodified _EYYRGFTLF_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.29443359375 2 598.292756 1194.57096 0.26541 0.00015879 2.0352 0.0012176 2.3006 0.0013764 598.2936692126218 76.276 0.24746 75.797 75.661 75.909 -0.47945 22 9 3 0 0 0 0.094149 1 41739 41739 34.402 13.948 1 870980 11155 16419 7597 7760 12934 12934 -0.018542743852776766 EYYRGFTLF 9 Unmodified _EYYRGFTLF_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.2928466796875 2 598.292756 1194.57096 0.060823 3.639E-05 0.59147 0.00035387 0.6523 0.00039026 598.2930733601142 75.714 0.36442 75.762 75.582 75.946 0.047943 37 16 3 0 0 0 0.011671 2 41728 41728;41831 75.761 43.455 1 9674500 11156 16419 7597 7760 12935;12936 12935 -0.018542743852776766 FAADIISVL 9 Unmodified _FAADIISVL_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7740173339844 2 474.773668 947.532783 0.50483 0.00023968 0.64733 0.00030733 1.1522 0.00054701 474.7739769830717 94.782 0.40388 94.362 94.146 94.55 -0.42044 47 19 3 0 0 0 0.052168 2 51790 51698;51790 44.407 10.305 1 3382000 11157 8488 7598 7761 12937;12938 12938 0.056918397000458754 FAADIISVL 9 Unmodified _FAADIISVL_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7742614746094 2 474.773668 947.532783 1.9297 0.00091615 -0.20299 -9.6372E-05 1.7267 0.00081978 474.77348064050403 94.289 0.33336 94.303 94.158 94.492 0.014244 20 11 3 0 0 0 0.18465 1 52427 52427 24.674 11.166 1 1443900 11158 8488 7598 7761 12939 12939 0.056918397000458754 FAADIISVL 9 Unmodified _FAADIISVL_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;ENST00000435761.5_1_3:184018386-184019655:+|nuORF;ENST00000463602.1_1_3:184018386-184019571:+|nuORF;ENST00000487475.5_1_3:184017042-184019447:+|nuORF;ENST00000459910.5_1_3:184017042-184019571:+|nuORF;ENST00000451892.1_1_1:240307909-240308467:-|nuORF ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2743835449219 2 474.773668 947.532783 1.1798 0.00056016 0.25602 0.00012155 1.4359 0.00068171 474.7738024018404 100.31 0.14131 94.132 94.03 94.171 -6.1757 23 8 3 0 0 0 0.078417 1 67006 67006 38.151 2.107 1 137080000 11159 8488 7598 7761 12940 12940 0.056918397000458754 FAADSFATL 9 Unmodified _FAADSFATL_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.4552612304688 1 942.456724 941.449448 -0.19319 -0.00018207 0.53583 0.000505 0.34264 0.00032293 942.4569447481945 65.103 0.23344 65.103 65.013 65.247 0 16 9 2 0 0 0 0.48152 1 36296 36296 8.5933 3.3626 1 916060 + 11160 23439 7599 7762 12941 12941 -0.02361896747800074 FAADSFATL 9 Unmodified _FAADSFATL_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 942.456787109375 1 942.456724 941.449448 0.012859 1.2119E-05 0.50478 0.00047573 0.51764 0.00048785 942.4571004998018 65.658 0.26806 65.174 65.021 65.289 -0.48428 17 11 2 0 0 0 0.28047 1 35810 35810 18.135 1.1927 1 984410 + 11161 23439 7599 7762 12942 12942 -0.02361896747800074 FAADSFATL 9 Unmodified _FAADSFATL_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 942.456724 941.449448 -0.19319 -0.00018207 0.53583 0.000505 0.34264 0.00032293 942.4569447481945 65.103 0.23344 65.103 65.013 65.247 0 -0.035225 1.6914E-05 NaN 18.135 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 916060 + 11162 23439 7599 7762 -0.02361896747800074 FAADSFATL 9 Unmodified _FAADSFATL_ 0 0 0 REV__ENSG00000184709|ENST00000371542|LRRC26 REV__ENSG00000184709|ENST00000371542|LRRC26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 942.456724 941.449448 0.012859 1.2119E-05 0.50478 0.00047573 0.51764 0.00048785 942.4571004998018 65.658 0.26806 65.174 65.021 65.289 -0.48428 0.035225 -1.2352E-05 NaN 18.135 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 984410 + 11163 23439 7599 7762 -0.02361896747800074 FAAEIMDAF 9 Unmodified _FAAEIMDAF_ 0 0 0 ENSG00000176720|ENST00000318407|BOK ENSG00000176720|ENST00000318407|BOK ENSG00000176720|ENST00000318407|BOK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2780151367188 2 507.733686 1013.45282 1.0897 0.00055326 0.24096 0.00012234 1.3306 0.00067561 507.73360223879143 94.083 0.56303 87.907 87.703 88.266 -6.1757 40 32 2 0 0 0 0.16229 1 62262 62262 18.135 12.375 1 8084300 11164 8618 7600 7763 12943 12943 -0.05336969965458138 FAAGVAEQF 9 Unmodified _FAAGVAEQF_ 0 0 0 ENST00000447882.1_1_1:16361675-16363149:-|nuORF;ENST00000487702.1_1_3:184059912-184060866:+|nuORF;ENSG00000185519|ENST00000375662|FAM131C;nc|ENSG00000175182|Q6UXB0-2|FAM131A;nc|ENSG00000175182|Q6UXB0-1|FAM131A;ENSG00000175182|ENST00000383847|FAM131A ENST00000447882.1_1_1:16361675-16363149:-|nuORF ENST00000447882.1_1_1:16361675-16363149:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2318420410156 2 470.232168 938.449782 0.78804 0.00037056 -0.62637 -0.00029454 0.16167 7.6022E-05 470.2316139173885 53.876 0.19834 53.876 53.77 53.968 0 14 8 2 0 0 0 0.3554 1 29915 29915 14.582 5.2343 1 1189800 11165 8489 7601 7764 12944 12944 -0.021904770279547847 FAAHCLKR 8 Unmodified _FAAHCLKR_ 0 0 0 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.71435546875 2 473.257997 944.501441 0.36071 0.00017071 -0.078539 -3.7169E-05 0.28217 0.00013354 473.2582386325367 61.372 0.24047 61.372 61.193 61.433 0 12 10 2 0 0 0 8.7369 1 34147 34147 0.79363 0.10326 1 404460 + 11166 17710 7602 7765 12945 12945 0.026969881849709054 FAALEKTYY 9 Unmodified _FAALEKTYY_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;ENST00000478047.1_1_10:101997888-102013290:-|nuORF;ENST00000466955.5_1_10:102009871-102027381:-|nuORF;ENST00000482452.5_1_10:102003500-102020776:-|nuORF nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2813110351562 2 553.281857 1104.54916 0.71426 0.00039519 -0.61778 -0.00034181 0.096485 5.3384E-05 553.2812774645178 46.44 0.21533 46.103 45.995 46.21 -0.33664 19 10 2 0 0 0 0.011671 1 24850 24850 75.761 51.74 1 5375500 11167 1655 7603 7766 12946 12946 0.0010692086611925333 FAALYGPRP 9 Unmodified _FAALYGPRP_ 0 0 0 REV__ENST00000380874.3_1_6:1610215-1610488:+|nuORF REV__ENST00000380874.3_1_6:1610215-1610488:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.27197265625 2 496.271627 990.528701 0.67606 0.00033551 -0.93757 -0.00046529 -0.26151 -0.00012978 496.2714249008468 47.66 0.32822 47.621 47.455 47.783 -0.038643 36 15 3 0 0 0 0.51218 1 25770 25770 6.7232 0.99131 1 12723000 + 11168 26320 7604 7767 12947 12947 0.03305794996992972 FAAPYYYGF 9 Unmodified _FAAPYYYGF_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENST00000498649.1_1_22:21350102-21351129:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2935180664062 2 549.750193 1097.48583 0.58595 0.00032213 1.3786 0.00075788 1.9645 0.00108 549.7506653540952 63.953 0.36789 63.468 63.432 63.8 -0.48512 29 18 2 0 0 0 0.18941 1 34912 34912 14.582 10.637 1 1712900 11169 1724 7605 7768 12948 12948 -0.059010198511032286 FAARPVSPF 9 Unmodified _FAARPVSPF_ 0 0 0 REV__nc|ENSG00000100399|Q6NUI6-2|CHADL REV__nc|ENSG00000100399|Q6NUI6-2|CHADL MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2727661132812 2 496.271627 990.528701 1.2367 0.00061374 0.6123 0.00030387 1.849 0.0009176 496.2722215662404 53.668 0.59668 47.864 47.603 48.2 -5.8042 60 37 2 0 0 0 0.20428 1 34007 34007 22.736 0.98964 1 57597000 + 11170 18061 7606 7769 12949 12949 0.03305794996992972 FAARSFYY 8 Unmodified _FAARSFYY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7481689453125 2 512.747985 1023.48142 0.97826 0.0005016 0.45621 0.00023392 1.4345 0.00073552 512.7482465166753 47.418 0.21819 47.379 47.28 47.498 -0.038647 22 9 3 0 0 0 0.50364 1 25543 25543 34.402 12.655 1 1617100 11171 7904 7607 7770 12950 12950 -0.029384842740114436 FAASVAHLY 9 Unmodified _FAASVAHLY_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7552490234375 2 489.75581 977.497067 0.82053 0.00040186 -0.44118 -0.00021607 0.37935 0.00018579 489.7556350981789 49.438 0.2158 49.045 48.922 49.138 -0.3923 18 10 2 0 0 0 0.078417 1 26578 26578 38.151 16.405 1 3343000 11172 2006 7608 7771 12951 12951 0.007418022430442761 FAAVELWR 8 Unmodified _FAAVELWR_ 0 0 0 REV__ENSG00000164976|ENST00000297625|MYORG REV__ENSG00000164976|ENST00000297625|MYORG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2715454101562 2 496.271627 990.528701 0.62127 0.00030832 -0.48766 -0.00024201 0.13361 6.6307E-05 496.27147715295956 47.918 0.29882 47.565 47.452 47.751 -0.3526 24 14 2 0 0 0 0.66338 1 25688 25688 20.454 1.0146 1 10013000 + 11173 21970 7609 7772 12952 12952 0.03305794996992972 FAAVELWR 8 Unmodified _FAAVELWR_ 0 0 0 REV__ENSG00000164976|ENST00000297625|MYORG REV__ENSG00000164976|ENST00000297625|MYORG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2714538574219 2 496.271627 990.528701 0.67606 0.00033551 -0.93757 -0.00046529 -0.26151 -0.00012978 496.2714249008468 47.66 0.32822 47.621 47.455 47.783 -0.038643 36 15 3 0 0 0 0.58902 1 25655 25655 26.884 7.4447 1 12723000 + 11174 21970 7609 7772 12953 12953 0.03305794996992972 FAAVELWR 8 Unmodified _FAAVELWR_ 0 0 0 REV__ENSG00000164976|ENST00000297625|MYORG REV__ENSG00000164976|ENST00000297625|MYORG MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2726135253906 2 496.271627 990.528701 1.2367 0.00061374 0.6123 0.00030387 1.849 0.0009176 496.2722215662404 53.668 0.59668 47.864 47.603 48.2 -5.8042 60 37 2 0 0 0 0.66338 2 33878 33878;34151 20.454 3.3407 1 57597000 + 11175 21970 7609 7772 12954;12955 12954 0.03305794996992972 FAAVELWR 8 Unmodified _FAAVELWR_ 0 0 0 REV__ENSG00000164976|ENST00000297625|MYORG REV__ENSG00000164976|ENST00000297625|MYORG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 496.271627 990.528701 0.62127 0.00030832 -0.48766 -0.00024201 0.13361 6.6307E-05 496.27147715295956 47.918 0.29882 47.565 47.452 47.751 -0.3526 -0.027977 0.00018879 NaN 26.884 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 10013000 + 11176 21970 7609 7772 0.03305794996992972 FAAVELWR 8 Unmodified _FAAVELWR_ 0 0 0 REV__ENSG00000164976|ENST00000297625|MYORG REV__ENSG00000164976|ENST00000297625|MYORG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 496.271627 990.528701 0.67606 0.00033551 -0.93757 -0.00046529 -0.26151 -0.00012978 496.2714249008468 47.66 0.32822 47.621 47.455 47.783 -0.038643 0.027977 -0.00025777 NaN 26.884 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 12723000 + 11177 21970 7609 7772 0.03305794996992972 FACDICGRKF 10 2 Carbamidomethyl (C) _FAC(Carbamidomethyl (C))DIC(Carbamidomethyl (C))GRKF_ FAC(1)DIC(1)GRKF FAC(44)DIC(44)GRKF 0 2 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.1988525390625 3 425.198726 1272.57435 0.93291 0.00039667 0.18682 7.9435E-05 1.1197 0.00047611 425.1987239746442 41.177 0.28507 36.569 36.401 36.686 -4.6079 30 17 2 0 0 0 0.11322 1 24642 24642 44.392 21.617 1 11690000 11178 3538 7610 7773 12956 12956 354;355 -0.051036708745868964 FACEVCGVRF 10 2 Carbamidomethyl (C) _FAC(Carbamidomethyl (C))EVC(Carbamidomethyl (C))GVRF_ FAC(1)EVC(1)GVRF FAC(73)EVC(73)GVRF 0 2 0 ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B MSMS AL20221201_MKP_PDAC_01 4 622.7857666015625 2 622.781176 1243.5478 NaN NaN NaN NaN NaN NaN NaN 62.677 1 56.501 56.001 57.001 -6.1757 0 0 0 0.016215 1 40458 40458 72.968 11.61 1 11179 6741 7611 7774 12957 12957 664;665 -0.06423359765904024 FACHIGNYSL 10 Unmodified _FACHIGNYSL_ 0 0 0 ENST00000464101.2_1_3:132379321-132384968:+|nuORF ENST00000464101.2_1_3:132379321-132384968:+|nuORF ENST00000464101.2_1_3:132379321-132384968:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.28759765625 2 562.763309 1123.51206 0.28119 0.00015824 -2.4911 -0.0014019 -2.2099 -0.0012437 562.7616272471308 37.683 0.13821 37.683 37.604 37.743 0 9 6 2 0 0 0 0.22636 1 20110 20110 17.113 9.2027 1 699050 11180 13707 7612 7775 12958 12958 -0.04475073951266495 FADCPPDLTL 10 Unmodified _FADCPPDLTL_ 0 0 0 STXBP5L|p.I426T|1|0.04|ENSG00000145087|chr3:121239063-121239063|T/C|missense_variant STXBP5L|p.I426T|1|0.04|ENSG00000145087|chr3:121239063-121239063|T/C|missense_variant STXBP5L|p.I426T|1|0.04|ENSG00000145087|chr3:121239063-121239063|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2559814453125 2 546.257525 1090.5005 -0.49023 -0.00026779 -1.3297 -0.00072637 -1.82 -0.00099416 546.2564119653994 48.649 0.37627 48.649 48.452 48.828 0 50 17 4 0 0 0 0.50944 1 26687 26687 15.847 1.0089 1 28835000 11181 30177 7613 7776 12959 12959 -0.04113315765266634 FADELLEA 8 Unmodified _FADELLEA_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 907.4390258789062 1 907.44074 906.433463 0.39019 0.00035407 0.90609 0.00082222 1.2963 0.0011763 907.441512965283 73.912 0.28292 73.912 73.738 74.021 0 20 11 2 0 0 0 0.80143 1 41094 41094 5.7604 0 1 1063500 + 11182 20562 7614 7777 12960 12960 -0.023496029847137834 FADEQTEY 8 Unmodified _FADEQTEY_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7078247070312 2 501.70618 1001.39781 NaN NaN NaN NaN NaN NaN NaN 71.378 1 71.378 70.878 71.878 0 0 0 0 0.90769 1 39759 39759 18.135 1.1927 1 + 11183 22824 7615 7778 12961 12961 -0.10283685232388962 FADEYQQL 8 Unmodified _FADEYQQL_ 0 0 0 nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.232666015625 2 507.232364 1012.45018 0.71565 0.000363 0.20913 0.00010608 0.92477 0.00046907 507.2323967370001 38.569 0.31113 38.569 38.414 38.725 0 42 15 4 0 0 0 0.57045 1 20675 20675 28.487 3.4959 1 13873000 11184 1291 7616 7779 12962 12962 -0.05555102098742282 FADFRGGVI 9 Unmodified _FADFRGGVI_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MSMS AL20221201_MKP_PDAC_01 4 491.2608337402344 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 68.152 1 61.977 61.477 62.477 -6.1757 0 0 0 0.12337 1 44463 44463 39.957 5.5556 1 + 11185 17510 7617 7780 12963 12963 0.016932046173451454 FADILSVEAL 10 Unmodified _FADILSVEAL_ 0 0 0 SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.296630859375 2 539.294965 1076.57538 0.24632 0.00013284 0.94621 0.00051028 1.1925 0.00064312 539.2953129543948 82.302 0.45728 82.302 82.022 82.48 0 54 20 3 0 0 0 0.44373 1 45549 45549 19.257 5.3509 1 1792000 11186 30174 7618 7781 12964 12964 0.040151900376031335 FADKGMYDI 9 Unmodified _FADKGMYDI_ 0 0 0 REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2433471679688 2 530.244418 1058.47428 NaN NaN NaN NaN NaN NaN NaN 64.361 1 63.876 63.376 64.376 -0.48512 0 0 0 0.7243 1 35114 35114 8.5933 0 1 + 11187 17301 7619 7782 12965 12965 -0.052615849367384726 FADLNLAEF 9 Unmodified _FADLNLAEF_ 0 0 0 ENST00000300434.3_1_9:130707799-130712818:-|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2;nc|ENSG00000167106|Q5T9C2-2|EEIG1;ENSG00000167106|ENST00000373095|EEIG1 ENST00000300434.3_1_9:130707799-130712818:-|nuORF ENST00000300434.3_1_9:130707799-130712818:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.257080078125 2 520.258382 1038.50221 NaN NaN NaN NaN NaN NaN NaN 96.473 1 90.297 89.797 90.797 -6.1757 0 0 0 0.46232 1 63931 63931 17.113 0.1706 1 11188 11551 7620 7783 12966 12966 -0.015499386850024166 FADLWEIY 8 Unmodified _FADLWEIY_ 0 0 0 REV__ENSG00000165449|ENST00000395348|SLC16A9 REV__ENSG00000165449|ENST00000395348|SLC16A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.755615234375 2 528.755475 1055.4964 -0.16354 -8.6472E-05 -0.17873 -9.4505E-05 -0.34227 -0.00018098 528.7556132753767 33.277 0.37188 33.277 33.109 33.481 0 57 19 5 0 0 0 0.67481 1 17513 17513 19.439 7.1983 1 18123000 + 11189 22011 7621 7784 12967 12967 -0.029130371966630264 FADMNEPLPK 10 Unmodified _FADMNEPLPK_ 0 0 0 REV__ENST00000540817.1_1_2:44571042-44588692:-|nuORF REV__ENST00000540817.1_1_2:44571042-44588692:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3305053710938 2 581.284074 1160.5536 0.8874 0.00051583 -1.2405 -0.0007211 -0.35314 -0.00020528 581.2833340526964 80.407 0.22977 79.917 79.779 80.009 -0.48933 12 8 2 0 0 0 0.23926 1 44006 44006 3.2813 0.97858 1 363550 + 11190 28586 7622 7785 12968 12968 -0.020259379826029544 FADSVTKY 8 Unmodified _FADSVTKY_ 0 0 0 ENST00000598797.1_1_19:8595070-8595355:-|nuORF;ENSG00000142347|ENST00000644032|MYO1F ENST00000598797.1_1_19:8595070-8595355:-|nuORF ENST00000598797.1_1_19:8595070-8595355:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7315979003906 2 465.732 929.449448 NaN NaN NaN NaN NaN NaN NaN 61.303 1 61.303 60.803 61.803 0 0 0 0 0.97444 1 34182 34182 4.3292 1.44 1 11191 5411 7623 7786 12969 12969 -0.018098967478181294 FADYPCHTV 9 Carbamidomethyl (C) _FADYPC(Carbamidomethyl (C))HTV_ FADYPC(1)HTV FADYPC(71)HTV 0 1 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2401733398438 2 555.239667 1108.46478 0.96163 0.00053394 -0.36115 -0.00020052 0.60048 0.00033341 555.2395126459361 39.246 0.33023 34.795 34.599 34.929 -4.4509 37 20 3 0 0 0 0.013323 1 23232 23232 71.134 29.294 1 13754000 11192 3829;16172 7624 7787 12970 12970 388 -0.08511353222297657 FAEAALRSF 9 Unmodified _FAEAALRSF_ 0 0 0 REV__nc|ENSG00000115163|P49450-2|CENPA REV__nc|ENSG00000115163|P49450-2|CENPA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2826232910156 2 506.266542 1010.51853 NaN NaN NaN NaN NaN NaN NaN 53.102 1 52.65 52.15 53.15 -0.45173 0 0 0 0.7243 1 28720 28720 8.5933 0 1 + 11193 27578 7625 7788 12971 12971 0.01369187271757255 FAEAVKTVF 9 Unmodified _FAEAVKTVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2808227539062 2 506.279118 1010.54368 -0.045872 -2.3224E-05 1.1796 0.0005972 1.1337 0.00057398 506.279784182474 52.977 0.30296 52.525 52.36 52.663 -0.45173 36 15 3 0 0 0 0.029718 1 28603 28603 55.503 21.4 1 11919000 11194 8296;16388 7626 7789 12972 12972 0.03883242074334703 FAEAVKTVF 9 Unmodified _FAEAVKTVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2796325683594 2 506.279118 1010.54368 1.0636 0.00053847 -1.1889 -0.00060194 -0.12537 -6.3473E-05 506.2786184598025 59.274 0.4921 53.2 52.905 53.397 -6.0745 51 27 2 0 0 0 0.010301 2 38116 37969;38116 79.596 45.494 1 60066000 11195 8296;16388 7626 7789 12973;12974 12974 0.03883242074334703 FAEAVKTVF 9 Unmodified _FAEAVKTVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.279118 1010.54368 0.8912 0.00045119 0.14175 7.1765E-05 1.0329 0.00052296 506.2790949523062 52.6 0.26133 52.541 52.407 52.669 -0.058918 0.0077351 -0.00070601 NaN 55.503 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5158600 11196 8296;16388 7626 7789 0.03883242074334703 FAEEDLPHI 9 Unmodified _FAEEDLPHI_ 0 0 0 REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.264404296875 2 535.761289 1069.50803 0.22615 0.00012116 4.1507 0.0022238 4.3769 0.002345 536.2635778420382 54.059 0.39884 53.593 53.347 53.746 -0.46664 52 19 4 0 0 0 0.17666 1 29245 29245 13.508 8.2772 1 5375000 + 11197 18703 7627 7790 12975 12975 -0.023948401733377978 FAEEEHPA 8 Unmodified _FAEEEHPA_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.3980102539062 1 929.399938 928.392661 0.32376 0.0003009 -0.93197 -0.00086617 -0.60821 -0.00056527 929.3988786484003 52.549 0.30013 52.549 52.402 52.702 0 22 13 2 0 0 0 0.46494 1 29044 29044 38.151 6.0342 1 4281400 + 11198 24045 7628 7791 12976 12976 -0.07439944304337587 FAEFTFPYSF 10 Unmodified _FAEFTFPYSF_ 0 0 0 REV__nc|ENSG00000011143|Q9NXB0-2|MKS1 REV__nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2880859375 2 628.28714 1254.55973 0.30072 0.00018894 -0.46807 -0.00029408 -0.16735 -0.00010514 628.2871391593623 72.56 0.24838 72.56 72.408 72.657 0 20 9 3 0 0 0 0.67033 1 40378 40378 6.2058 0 1 1332800 + 11199 17052 7629 7792 12977 12977 -0.05737096479424508 FAEGVGAVY 9 Unmodified _FAEGVGAVY_ 0 0 0 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.4465942382812 1 912.44616 911.438883 0.44678 0.00040767 0.48031 0.00043826 0.9271 0.00084593 912.4466489516145 49.576 0.16416 49.576 49.465 49.629 0 9 6 2 0 0 0 0.2001 1 27287 27287 23.148 6.2061 1 1140500 11200 647 7630 7793 12978 12978 -0.0203787940224629 FAEKQSTDTY 10 Unmodified _FAEKQSTDTY_ 0 0 0 REV__nc|ENSG00000117322|P20023-2|CR2 REV__nc|ENSG00000117322|P20023-2|CR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1836853027344 3 397.183904 1188.52988 -0.56583 -0.00022474 0.99265 0.00039427 0.42682 0.00016953 397.1842640727697 18.466 0.2295 18.466 18.357 18.586 0 99 27 5 0 0 0 0.70951 1 9239 9239 0.77653 0 1 26381000 + 11201 29593 7631 7794 12979 12979 -0.05684080215405629 FAEKVFPTKL 10 Unmodified _FAEKVFPTKL_ 0 0 0 REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2 REV__nc|ENSG00000173253|Q9Y5R5-3|DMRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3430786132812 2 590.342249 1178.66995 0.30749 0.00018153 1.0527 0.00062145 1.3602 0.00080298 590.3428168414598 63.081 0.33321 63.06 62.888 63.222 -0.021614 54 16 4 0 0 0 0.52888 1 34554 34554 14.838 0 1 60782000 + 11202 22715 7632 7795 12980 12980 0.08775748579614628 FAELLKHSLKE 11 Unmodified _FAELLKHSLKE_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.8782348632812 2 657.874445 1313.73434 4.1579 0.0027354 -1.0753 -0.00070739 3.0827 0.002028 657.873821085583 99.401 0.24336 99.365 99.208 99.452 -0.036301 24 8 4 0 0 0 0.13715 1 55194 55194 38.176 0 1 37601000 + 11203 19490 7633 7796 12981 12981 0.09001903665762256 FAELLKHSLKE 11 Unmodified _FAELLKHSLKE_ 0 0 0 REV__ENSG00000125445|ENST00000245539|MRPS7 REV__ENSG00000125445|ENST00000245539|MRPS7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 657.874445 1313.73434 0.37645 0.00024765 1.2533 0.0008245 1.6297 0.0010722 658.3765734728502 99.533 0.10854 99.376 99.298 99.407 -0.15751 0.0053657 0.0014442 NaN 38.176 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 803290 + 11204 19490 7633 7796 0.09001903665762256 FAELRQERERQ 11 Unmodified _FAELRQERERQ_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.9242858886719 3 487.923418 1460.74842 0.98125 0.00047878 1.08 0.00052695 2.0612 0.0010057 488.258214809292 82.945 0.33969 83.007 82.788 83.127 0.062004 49 12 5 0 0 0 0.65846 2 45835 45835;45936 4.1166 1.0379 1 33124000 + 11205 19709 7634 7797 12982;12983 12982 0.036479491467616754 FAELRQERERQ 11 Unmodified _FAELRQERERQ_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 731.381591796875 2 731.381488 1460.74842 0.52915 0.00038701 0.31597 0.0002311 0.84512 0.0006181 731.3816057150085 98.633 0.11469 92.457 92.378 92.493 -6.1757 21 8 3 0 0 0 0.58219 1 65427 65427 12.241 1.4411 1 48931000 + 11206 19709 7634 7797 12984 12984 0.036479491467616754 FAEMIQPEY 9 Oxidation (M) _FAEM(Oxidation (M))IQPEY_ FAEM(1)IQPEY FAEM(55)IQPEY 0 0 1 ENSG00000138646|ENST00000264350|HERC5;ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7562255859375 2 572.254982 1142.49541 0.47816 0.00027363 0.62485 0.00035758 1.103 0.00063121 572.75722580625 56.042 0.47519 50.121 49.737 50.212 -5.9211 48 27 2 0 0 0 0.031062 2 35596 35596;35744 54.774 22.468 1 22018000 11207 5078 7635 7798 12985;12986 12985 933 -0.0701361962790088 FAEMIQPEY 9 Unmodified _FAEMIQPEY_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5;ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.258056640625 2 564.257525 1126.5005 0.81411 0.00045937 -0.025976 -1.4657E-05 0.78814 0.00044471 564.2576695825297 67.633 0.33024 61.457 61.288 61.618 -6.1757 41 18 3 0 0 0 0.012148 2 44048 44048;44183 74.423 34.465 1 22779000 11208 5078 7635 7799 12987;12988 12987 -0.05769315765269312 FAENGTVQY 9 Unmodified _FAENGTVQY_ 0 0 0 ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF ENSG00000100417|ENST00000216259|PMM1 ENSG00000100417|ENST00000216259|PMM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7401733398438 2 514.737814 1027.46108 0.33613 0.00017302 0.84243 0.00043363 1.1786 0.00060665 514.738258417469 37.128 0.30007 37.128 36.977 37.277 0 46 14 4 0 0 0 0.08691 2 19690 19690;19789 36.127 21.289 1 14456000 11209 1821 7636 7800 12989;12990 12989 -0.05155699724468832 FAENGTVQY 9 Unmodified _FAENGTVQY_ 0 0 0 ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF ENSG00000100417|ENST00000216259|PMM1 ENSG00000100417|ENST00000216259|PMM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7384643554688 2 514.737814 1027.46108 0.61288 0.00031547 0.44661 0.00022989 1.0595 0.00054536 514.7381710418122 43.577 0.41662 38.812 38.65 39.066 -4.7648 60 25 3 0 0 0 0.08691 2 26552 26429;26552 36.127 20.28 1 24671000 11210 1821 7636 7800 12991;12992 12992 -0.05155699724468832 FAEQCPEE 8 Unmodified _FAEQCPEE_ 0 0 0 REV__ENSG00000204421|ENST00000375819|LY6G6C REV__ENSG00000204421|ENST00000375819|LY6G6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.6905822753906 2 476.689475 951.364398 0.43395 0.00020686 1.1324 0.00053981 1.5664 0.00074667 476.6896697533899 59.425 0.29526 59.425 59.307 59.602 0 23 12 3 0 0 0 0.79982 1 33122 33122 6.7232 1.4925 1 2428800 + 11211 24167 7637 7801 12993 12993 -0.11323010275930301 FAEQYRAI 8 Unmodified _FAEQYRAI_ 0 0 0 REV__ENSG00000088538|ENST00000266037|DOCK3 REV__ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2591857910156 2 499.258717 996.50288 -0.056323 -2.812E-05 1.4408 0.00071931 1.3844 0.00069119 499.2594768936004 51.161 0.33854 50.748 50.557 50.896 -0.41351 29 16 3 0 0 0 0.6895 1 27556 27556 18.135 1.0221 1 5373200 + 11212 17806 7638 7802 12994 12994 0.004489007547022084 FAEQYRAI 8 Unmodified _FAEQYRAI_ 0 0 0 REV__ENSG00000088538|ENST00000266037|DOCK3 REV__ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2597351074219 2 499.258717 996.50288 0.8919 0.00044529 -0.36253 -0.000181 0.52937 0.00026429 499.25850510810136 55.791 0.38459 49.87 49.621 50.006 -5.9211 39 22 2 0 0 0 0.61462 1 35466 35466 24.674 5.2349 1 20680000 + 11213 17806 7638 7802 12995 12995 0.004489007547022084 FAEVPGSP 8 Unmodified _FAEVPGSP_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3944091796875 1 803.393396 802.386119 -0.0051079 -4.1036E-06 0.5711 0.00045882 0.56599 0.00045471 803.3937435492458 91.134 0.40459 91.134 90.906 91.31 0 51 22 3 0 0 0 0.80676 1 50327 50327 2.5775 0 1 5078600 + 11214 21753 7639 7803 12996 12996 -0.022978374650392652 FAFDPSVNY 9 Unmodified _FAFDPSVNY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2432861328125 2 530.242732 1058.47091 0.51912 0.00027526 0.47469 0.0002517 0.99381 0.00052696 530.242898852233 68 0.45789 68 67.766 68.224 0 62 22 4 0 0 0 0.023164 2 37935 37836;37935 60.39 42.255 1 7375600 11215 4383 7640 7804 12997;12998 12998 -0.055985117190857636 FAFDPSVNY 9 Unmodified _FAFDPSVNY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2440185546875 2 530.242732 1058.47091 0.30936 0.00016403 0.26597 0.00014103 0.57533 0.00030506 530.242830113492 68.61 0.52573 68.129 67.804 68.33 -0.48071 72 23 4 0 0 0 0.024882 2 37431 37431;37536 58.679 40.532 1 52947000 11216 4383 7640 7804 12999;13000 12999 -0.055985117190857636 FAFDPSVNY 9 Unmodified _FAFDPSVNY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2427978515625 2 530.242732 1058.47091 0.78222 0.00041477 -0.073784 -3.9123E-05 0.70844 0.00037564 530.242699385261 75.947 0.7685 69.771 69.396 70.164 -6.1757 121 41 4 0 0 0 0.012148 3 49817 49571;49695;49817 74.423 50.402 1 204040000 11217 4383 7640 7804 13001;13002;13003 13003 -0.055985117190857636 FAFDPSVNY 9 Unmodified _FAFDPSVNY_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.242732 1058.47091 0.43536 0.00023085 -0.30558 -0.00016203 0.12978 6.8814E-05 530.2428304310436 68.128 0.31657 68.153 67.983 68.3 0.025146 0.059007 -0.0006059 NaN 60.39 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4175800 11218 4383 7640 7804 -0.055985117190857636 FAFDTNLSY 9 Unmodified _FAFDTNLSY_ 0 0 0 REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9 REV__nc|ENSG00000170054|Q86WD7-2|SERPINA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2452392578125 2 539.248015 1076.48148 2.7828 0.0015006 -0.20587 -0.00011101 2.577 0.0013896 539.2473077001456 99.85 0.21438 99.814 99.666 99.88 -0.036301 17 7 3 0 0 0 0.05447 1 55455 55455 43.858 3.901 1 5435500 + 11219 22442 7641 7805 13004 13004 -0.053705290646803405 FAFEHSEEY 9 Unmodified _FAFEHSEEY_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7415161132812 2 579.740554 1157.46655 0.62807 0.00036412 0.16852 9.7699E-05 0.7966 0.00046182 579.7398244938755 42.4 0.66993 42.4 42.086 42.756 0 98 33 5 0 0 0 0.0090524 2 22900 22900;23012 97.075 70.191 1 205610000 11220 5296 7642 7806 13005;13006 13005 -0.10588020932664222 FAFEHSEEY 9 Unmodified _FAFEHSEEY_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7410278320312 2 579.740554 1157.46655 0.1312 7.6062E-05 0.37621 0.00021811 0.50741 0.00029417 579.7406759071897 42.698 0.25105 42.391 42.277 42.528 -0.30682 28 10 3 0 0 0 0.012668 1 22669 22669 92.822 75.88 1 36212000 11221 5296 7642 7806 13007 13007 -0.10588020932664222 FAFEHSEEY 9 Unmodified _FAFEHSEEY_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7405395507812 2 579.740554 1157.46655 0.67973 0.00039407 -0.44439 -0.00025763 0.23534 0.00013644 579.7400861969913 42.435 0.19555 42.426 42.296 42.491 -0.0088196 14 8 2 0 0 0 0.017075 1 22728 22728 85.357 52.571 1 5304200 11222 5296 7642 7806 13008 13008 -0.10588020932664222 FAFEHSEEY 9 Unmodified _FAFEHSEEY_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000568870.1_1_16:89958640-89960287:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7415161132812 2 579.740554 1157.46655 0.70246 0.00040725 0.13031 7.5547E-05 0.83277 0.00048279 579.7406079349806 48.034 0.5187 42.8 42.515 43.033 -5.2339 102 31 4 0 0 0 0.0074135 3 29723 29723;29857;29989 139.54 115.52 1 396690000 11223 5296 7642 7806 13009;13010;13011 13009 -0.10588020932664222 FAFNFHLNLW 10 Unmodified _FAFNFHLNLW_ 0 0 0 ENST00000268042.6_1_15:98508862-98509219:+|nuORF ENST00000268042.6_1_15:98508862-98509219:+|nuORF ENST00000268042.6_1_15:98508862-98509219:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 654.8300170898438 2 654.82984 1307.64513 NaN NaN NaN NaN NaN NaN NaN 90.235 1 90.235 89.735 90.735 0 0 0 0 1.0024 1 49923 49923 0.40072 0 1 11224 11355 7643 7807 13012 13012 0.0036111349688781047 FAFPGSTNSL 10 Unmodified _FAFPGSTNSL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7568969726562 2 520.756007 1039.49746 0.53355 0.00027785 0.17006 8.8561E-05 0.70361 0.00036641 520.7561906600287 68.623 0.38136 68.648 68.436 68.818 0.025146 37 17 3 0 0 0 0.085354 2 37640 37640;37740 49.933 17.628 1 7622700 11225 4412 7644 7808 13013;13014 13013 -0.020708228277499074 FAFPGSTNSL 10 Unmodified _FAFPGSTNSL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7574462890625 2 520.756007 1039.49746 0.89948 0.00046841 0.36784 0.00019156 1.2673 0.00065997 520.7566354600693 75.819 0.44586 69.643 69.448 69.894 -6.1757 36 23 2 0 0 0 0.085354 2 49566 49566;49689 49.933 17.628 1 16148000 11226 4412 7644 7808 13015;13016 13015 -0.020708228277499074 FAFPGSTNSL 10 Unmodified _FAFPGSTNSL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.756007 1039.49746 0.057603 2.9997E-05 -1.2579 -0.00065507 -1.2003 -0.00062507 520.7560178592375 69.043 0.27498 68.562 68.465 68.74 -0.48071 -0.042922 -0.0014151 NaN 49.933 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1393500 11227 4412 7644 7808 -0.020708228277499074 FAFQGSFDY 9 Unmodified _FAFQGSFDY_ 0 0 0 REV__ENSG00000135423|ENST00000311966|GLS2;REV__nc|ENSG00000115419|O94925-3|GLS REV__ENSG00000135423|ENST00000311966|GLS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.305908203125 2 541.234907 1080.45526 0.64917 0.00035135 0.30708 0.0001662 0.95625 0.00051756 541.2351394798291 75.954 0.4026 69.778 69.601 70.004 -6.1757 35 21 2 0 0 0 0.18521 1 49796 49796 16.942 4.4107 1 9225200 + 11228 20064;18979 7645 7809 13017 13017 -0.08174798236132119 FAFSSSYAF 9 Unmodified _FAFSSSYAF_ 0 0 0 nc|ENSG00000165646|Q05940-2|SLC18A2;ENSG00000165646|ENST00000644641|SLC18A2 nc|ENSG00000165646|Q05940-2|SLC18A2 nc|ENSG00000165646|Q05940-2|SLC18A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7261962890625 2 513.732 1025.44945 0.53596 0.00027534 -4.2318 -0.002174 -3.6959 -0.0018987 513.730336031813 53.667 0.75062 53.667 53.281 54.032 0 70 34 3 0 0 0 0.30562 1 29613 29613 16.942 4.4107 1 18826000 11229 7367 7646 7810 13018 13018 -0.06225896747810111 FAFTRDEQD 9 Unmodified _FAFTRDEQD_ 0 0 0 REV__ENST00000315367.3_1_8:96146077-96166263:+|nuORF REV__ENST00000315367.3_1_8:96146077-96166263:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7521362304688 2 564.751453 1127.48835 0.90885 0.00051327 0.16997 9.5992E-05 1.0788 0.00060926 564.7518405633488 71.8 0.31052 71.839 71.664 71.974 0.039024 50 14 5 0 0 0 0.1773 1 39501 39501 25.399 0.40835 1 12205000 + 11230 25461 7647 7811 13019 13019 -0.0702921618410528 FAFVTDNTY 9 Unmodified _FAFVTDNTY_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2479248046875 2 539.248015 1076.48148 0.24909 0.00013432 -0.30324 -0.00016352 -0.054155 -2.9203E-05 539.2482266190063 63.76 0.35912 63.76 63.52 63.879 0 29 14 3 0 0 0 0.16776 1 35533 35533 26.341 5.4701 1 3166800 11231 4553 7648 7812 13020 13020 -0.05370529064657603 FAFVTDNTY 9 Unmodified _FAFVTDNTY_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2486572265625 2 539.248015 1076.48148 0.5308 0.00028623 0.68873 0.0003714 1.2195 0.00065763 539.2483597133046 64.345 0.36253 63.859 63.675 64.037 -0.48512 53 16 4 0 0 0 0.16776 2 35054 35054;35151 26.341 9.399 1 10430000 11232 4553 7648 7812 13021;13022 13021 -0.05370529064657603 FAFVTDNTY 9 Unmodified _FAFVTDNTY_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2490844726562 2 539.248015 1076.48148 1.0133 0.00054644 1.0907 0.00058814 2.104 0.0011346 539.24799653484 71.318 0.46487 65.143 64.859 65.324 -6.1757 43 22 3 0 0 0 0.068777 2 46539 46539;46666 40.449 12.82 1 32764000 11233 4553 7648 7812 13023;13024 13023 -0.05370529064657603 FAGLGHSFI 9 Unmodified _FAGLGHSFI_ 0 0 0 REV__ENSG00000158006|ENST00000374282|PAFAH2 REV__ENSG00000158006|ENST00000374282|PAFAH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 475.2818298339844 2 474.750527 947.486502 0.41265 0.0001959 0.4665 0.00022147 0.87915 0.00041738 474.75050444215697 27.806 0.3592 24.702 24.473 24.832 -3.1045 33 18 2 0 0 0 0.16229 1 15314 15314 24.674 13.034 1 10498000 + 11234 21409 7649 7813 13025 13025 0.01065819588609429 FAGPLARALF 10 Unmodified _FAGPLARALF_ 0 0 0 REV__nc|ENSG00000120686|P61960-2|UFM1 REV__nc|ENSG00000120686|P61960-2|UFM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8084106445312 2 531.808377 1061.6022 0.62327 0.00033146 -0.26375 -0.00014026 0.35952 0.0001912 531.8080848435911 68.636 0.2776 68.661 68.562 68.84 0.025154 27 12 3 0 0 0 0.42068 1 37719 37719 20.454 1.1966 1 4540900 + 11235 29603 7650 7814 13026 13026 0.07386343439452503 FAGPLARALF 10 Unmodified _FAGPLARALF_ 0 0 0 REV__nc|ENSG00000120686|P61960-2|UFM1 REV__nc|ENSG00000120686|P61960-2|UFM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.808377 1061.6022 0.62327 0.00033146 -0.26375 -0.00014026 0.35952 0.0001912 531.8080848435911 68.636 0.2776 68.661 68.562 68.84 0.025154 0 0 NaN 20.454 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4540900 + 11236 29603 7650 7814 0.07386343439452503 FAGVGPFA 8 Unmodified _FAGVGPFA_ 0 0 0 ENSG00000126814|ENST00000261249|TRMT5 ENSG00000126814|ENST00000261249|TRMT5 ENSG00000126814|ENST00000261249|TRMT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2010192871094 2 383.200139 764.385725 1.5926 0.00061028 0.20466 7.8426E-05 1.7973 0.00068871 383.2002483376452 54.376 0.39048 48.51 48.266 48.656 -5.8653 45 23 2 0 0 0 0.80044 1 34392 34392 6.3541 0 1 34641000 11237 3973 7651 7815 13027 13027 -0.005892123942317085 FAHASGMQY 9 Oxidation (M) _FAHASGM(Oxidation (M))QY_ FAHASGM(1)QY FAHASGM(42)QY 0 0 1 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2182006835938 2 514.218734 1026.42292 0.89263 0.00045901 -0.067245 -3.4579E-05 0.82538 0.00042443 514.2184927797625 21.895 0.17174 19.16 19.102 19.274 -2.7348 18 9 2 0 0 0 0.06187 1 11791 11791 42.095 32.747 1 2483800 11238 9284 7652 7816 13028 13028 1534 -0.08923908910787759 FAHASGMQY 9 Unmodified _FAHASGMQY_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.7567749023438 2 506.221277 1010.428 0.73354 0.00037134 0.31137 0.00015762 1.0449 0.00052896 506.2214155040941 32.642 0.22044 28.786 28.652 28.872 -3.8562 17 10 2 0 0 0 0.20727 1 18660 18660 7.9102 0.62092 1 5524100 11239 9284 7652 7817 13029 13029 -0.07679605048167559 FAHDDSVMY 9 Oxidation (M) _FAHDDSVM(Oxidation (M))Y_ FAHDDSVM(1)Y FAHDDSVM(71)Y 0 0 1 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7207641601562 2 550.721307 1099.42806 -0.2098 -0.00011554 -0.29873 -0.00016452 -0.50853 -0.00028006 550.721369316241 28.872 0.33999 28.872 28.723 29.063 0 37 16 3 0 0 0 0.013472 1 14904 14904 70.716 45.316 1 16048000 11240 894 7653 7818 13030 13030 138 -0.11767649838839134 FAHDDSVMY 9 Oxidation (M) _FAHDDSVM(Oxidation (M))Y_ FAHDDSVM(1)Y FAHDDSVM(71)Y 0 0 1 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7218017578125 2 550.721307 1099.42806 0.49266 0.00027132 -0.42445 -0.00023376 0.068209 3.7564E-05 550.7209836953658 33.042 0.34253 29.186 29.01 29.352 -3.8562 32 22 2 0 0 0 0.013472 2 18861 18861;19010 70.716 45.316 1 30093000 11241 894 7653 7818 13031;13032 13031 138 -0.11767649838839134 FAHDDSVMY 9 Unmodified _FAHDDSVMY_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.723876953125 2 542.723849 1083.43315 0.26095 0.00014163 -0.24116 -0.00013088 0.019797 1.0744E-05 542.72367440112 41.286 0.36779 36.678 36.449 36.817 -4.6079 50 22 3 0 0 0 0.038285 1 24742 24742 50.855 26.834 1 26589000 11242 894 7653 7819 13033 13033 -0.10523345976207565 FAHLWQVQFTM 11 Unmodified _FAHLWQVQFTM_ 0 0 0 REV__nc|ENSG00000142166|P17181-3|IFNAR1 REV__nc|ENSG00000142166|P17181-3|IFNAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.5877380371094 3 469.900786 1406.68053 -0.24534 -0.00011529 -3.5049 -0.0016469 -3.7502 -0.0017622 469.8991267816988 30.886 0.22854 30.916 30.83 31.059 0.030106 14 9 2 0 0 0 0.3058 1 16201 16201 1.4551 0.12547 1 1028900 + 11243 29669 7654 7820 13034 13034 -0.006545920376538561 FAHRPLVG 8 Unmodified _FAHRPLVG_ 0 0 0 ENST00000356860.7_1_7:81978947-82072764:-|nuORF ENST00000356860.7_1_7:81978947-82072764:-|nuORF ENST00000356860.7_1_7:81978947-82072764:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7593994140625 2 448.758687 895.502821 0.83182 0.00037329 0.41586 0.00018662 1.2477 0.00055991 448.75885551229226 69.414 0.56003 69.445 69.051 69.611 0.030914 56 30 2 0 0 0 0.80676 1 38101 38101 2.5775 0 1 15212000 11244 12101 7655 7821 13035 13035 0.05088945545378465 FAHSAVEM 8 Oxidation (M) _FAHSAVEM(Oxidation (M))_ FAHSAVEM(1) FAHSAVEM(91) 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2018127441406 2 454.202553 906.390553 -0.14713 -6.6829E-05 -0.99643 -0.00045258 -1.1436 -0.00051941 454.2021235982341 18.417 0.33139 18.417 18.197 18.529 0 153 48 4 0 0 0 0.13235 2 9159 9059;9159 90.836 56.648 1 8330900 11245 16188 7656 7822 13036;13037 13037 1805 -0.06638696313780201 FAHSAVEM 8 Oxidation (M) _FAHSAVEM(Oxidation (M))_ FAHSAVEM(1) FAHSAVEM(78) 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.202880859375 2 454.202553 906.390553 1.2304 0.00055885 -0.26697 -0.00012126 0.96343 0.00043759 454.202579921617 20.265 0.53377 17.572 17.368 17.901 -2.693 96 33 4 0 0 0 0.17881 2 10808 10808;10906 78.445 52.103 1 38945000 11246 16188 7656 7822 13038;13039 13038 1805 -0.06638696313780201 FAHSAVEM 8 Unmodified _FAHSAVEM_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.204833984375 2 446.205096 890.395638 1.0804 0.00048207 -0.4619 -0.0002061 0.61847 0.00027596 446.20500330907976 34.826 0.46727 30.731 30.486 30.954 -4.0951 85 27 4 0 0 0 0.35156 2 20003 20003;20123 49.669 35.087 1 84072000 11247 16188 7656 7823 13040;13041 13040 -0.0539439245117137 FAIDPHLLLSV 11 Unmodified _FAIDPHLLLSV_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8533325195312 2 612.852981 1223.69141 1.1306 0.00069289 1.0167 0.00062306 2.1472 0.0013159 612.8533850740156 100.03 0.15533 93.854 93.769 93.924 -6.1757 19 10 3 0 0 0 0.019459 1 66801 66801 57.722 33.701 1 33868000 11248 3605 7657 7824 13042 13042 0.08851133608322925 FAIYICIVKF 10 Unmodified _FAIYICIVKF_ 0 0 0 REV__ENSG00000144227|ENST00000272641|NXPH2 REV__ENSG00000144227|ENST00000272641|NXPH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8444213867188 2 608.843571 1215.67259 NaN NaN NaN NaN NaN NaN NaN 100.94 1 100.9 100.4 101.4 -0.04216 0 0 0 0.98914 1 56076 56076 1.8442 0.19162 1 + 11249 20694 7658 7825 13043 13043 0.07337880712907463 FAKEIDVSY 9 Unmodified _FAKEIDVSY_ 0 0 0 ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4 ENST00000487222.5_1_7:100401085-100421908:-|nuORF ENST00000487222.5_1_7:100401085-100421908:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7730102539062 2 536.27149 1070.52843 0.22973 0.0001232 0.73975 0.00039671 0.96948 0.00051991 536.2721292491791 43.282 0.15655 43.282 43.242 43.399 0 12 7 2 0 0 0 0.07087 1 23515 23515 39.95 25.111 1 3197100 11250 9813 7659 7826 13044 13044 -0.004016695135305781 FAKKTFISY 9 Unmodified _FAKKTFISY_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8746032714844 3 368.874454 1103.60153 -0.30303 -0.00011178 1.4878 0.00054883 1.1848 0.00043705 368.8750042190515 36.832 0.2783 36.853 36.706 36.984 0.021545 19 12 2 0 0 0 0.54444 1 19555 19555 2.7352 1.0826 1 1949400 11251 660 7660 7827 13045 13045 0.05387503999759247 FAKLVEEFRS 10 Unmodified _FAKLVEEFRS_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2238464355469 3 409.224034 1224.65027 0.38473 0.00015744 -0.2366 -9.6822E-05 0.14813 6.062E-05 409.2239048700788 31.008 0.3876 30.906 30.665 31.053 -0.10269 24 15 2 0 0 0 0.67459 1 16105 16105 3.0723 0.63748 1 2216400 11252 2865 7661 7828 13046 13046 0.04693372568840459 FAKMLDHEY 9 Oxidation (M) _FAKM(Oxidation (M))LDHEY_ FAKM(1)LDHEY FAKM(51)LDHEY 0 0 1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5147705078125 3 390.514708 1168.5223 -0.42356 -0.00016541 0.42662 0.0001666 0.0030545 1.1928E-06 390.5148936268164 24.48 0.26229 24.48 24.348 24.61 0 41 12 5 0 0 0 0.037253 1 12492 12492 51.415 33.042 1 15887000 11253 10191 7662 7829 13047 13047 1659 -0.055225110167157254 FAKMLDHEY 9 Unmodified _FAKMLDHEY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.1835632324219 3 385.18307 1152.52738 0.95314 0.00036713 -0.16715 -6.4381E-05 0.786 0.00030275 385.18326454519837 38.438 0.37838 34.069 33.855 34.234 -4.3689 63 23 4 0 0 0 0.16226 1 22630 22630 24.991 20.874 1 43613000 11254 10191 7662 7830 13048 13048 -0.04278207154084157 FAKMLDHEY 9 Unmodified _FAKMLDHEY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MSMS AL20221201_MKP_PDAC_01 4 577.270751953125 2 577.270967 1152.52738 NaN NaN NaN NaN NaN NaN NaN 38.396 1 34.027 33.527 34.527 -4.3689 0 0 0 0.011453 1 22644 22644 90.135 63.251 1 11255 10191 7662 7830 13049 13049 -0.04278207154084157 FAKMLDHEY 9 Unmodified _FAKMLDHEY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 385.18307 1152.52738 -0.24808 -9.5554E-05 1.0948 0.00042168 0.84669 0.00032613 385.18358397838114 34.036 0.1997 33.845 33.744 33.944 -0.19131 -0.11227 0.0010727 NaN 24.991 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1082700 11256 10191 7662 7830 -0.04278207154084157 FAKSYSGDL 9 Unmodified _FAKSYSGDL_ 0 0 0 REV__ENSG00000005175|ENST00000005386|RPAP3 REV__ENSG00000005175|ENST00000005386|RPAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2418518066406 2 494.242732 986.470912 0.499 0.00024663 -2.3504 -0.0011617 -1.8514 -0.00091505 494.24141426702005 57.423 0.24984 57.423 57.26 57.51 0 13 10 2 0 0 0 0.32871 1 31927 31927 15.847 1.0089 1 875330 + 11257 16963 7663 7831 13050 13050 -0.022865117190917772 FALHQAYVDF 10 Unmodified _FALHQAYVDF_ 0 0 0 REV__ENSG00000117411|ENST00000372324|B4GALT2 REV__ENSG00000117411|ENST00000372324|B4GALT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2003784179688 3 404.201229 1209.58186 0.1151 4.6523E-05 0.32656 0.000132 0.44166 0.00017852 404.2012547277358 48.511 0.29 48.467 48.341 48.631 -0.04369 40 14 4 0 0 0 0.54684 1 26158 26158 8.4443 0 1 10390000 + 11258 19103 7664 7832 13051 13051 -0.014548720110269642 FALHQAYVDF 10 Unmodified _FALHQAYVDF_ 0 0 0 REV__ENSG00000117411|ENST00000372324|B4GALT2 REV__ENSG00000117411|ENST00000372324|B4GALT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3008422851562 2 605.798206 1209.58186 0.32414 0.00019636 0.89205 0.0005404 1.2162 0.00073677 606.2998676784493 48.511 0.17751 48.467 48.395 48.573 -0.04369 21 8 3 0 0 0 0.2178 1 26195 26195 32.305 3.2239 1 2595400 + 11259 19103 7664 7832 13052 13052 -0.014548720110269642 FALHSASVF 9 Unmodified _FALHSASVF_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENSG00000127837|ENST00000248450|AAMP;ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2574157714844 2 489.75581 977.497067 -0.19534 -9.567E-05 -0.014423 -7.0638E-06 -0.20977 -0.00010273 489.7558412549553 55.995 0.19786 55.926 55.821 56.019 -0.068737 18 10 2 0 0 0 0.045537 1 30413 30413 46.921 22.247 1 5197700 11260 4029;13667 7665 7833 13053 13053 0.007418022430556448 FALKIVPTY 9 Unmodified _FALKIVPTY_ 0 0 0 ENST00000563229.5_1_15:74281313-74286901:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1 ENST00000563229.5_1_15:74281313-74286901:-|nuORF ENST00000563229.5_1_15:74281313-74286901:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3129272460938 2 526.312961 1050.61137 0.46505 0.00024476 2.0257 0.0010662 2.4908 0.0013109 526.3136883366974 69.204 0.16663 69.235 69.147 69.314 0.030914 23 7 4 0 0 0 0.009483 1 38012 38012 81.89 60.144 1 7884600 11261 15356 7666 7834 13054 13054 0.08808692005163721 FALKSPLIR 9 Unmodified _FALKSPLIR_ 0 0 0 nc|ENSG00000197619|Q8N8J6|ZNF615;nc|ENSG00000197619|Q8N8J6-3|ZNF615;ENSG00000197619|ENST00000598071|ZNF615 nc|ENSG00000197619|Q8N8J6|ZNF615 nc|ENSG00000197619|Q8N8J6|ZNF615 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.1939086914062 2 522.831852 1043.64915 0.76776 0.00040141 0.59464 0.0003109 1.3624 0.00071231 522.8320864444369 43.565 0.25703 38.8 38.693 38.95 -4.7648 27 15 2 0 0 0 0.20554 1 26525 26525 9.3831 0 1 9891700 11262 9981 7667 7835 13055 13055 0.12907202990618316 FALLCCPFAL 10 Unmodified _FALLCCPFAL_ 0 0 0 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7774658203125 2 549.279749 1096.54494 -0.25274 -0.00013883 -1.4615 -0.00080277 -1.7142 -0.00094159 549.279046182082 26.328 0.22209 26.328 26.246 26.468 0 14 10 2 0 0 0 0.23489 1 13511 13511 7.9102 0 1 1039700 11263 7237 7668 7836 13056 13056 0.000534168472086094 FALLKSHVL 9 Unmodified _FALLKSHVL_ 0 0 0 REV__nc|ENSG00000289758|Q92902-2|HPS1 REV__nc|ENSG00000289758|Q92902-2|HPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8164672851562 2 514.318577 1026.6226 1.3035 0.00067043 -2.1445 -0.001103 -0.84099 -0.00043254 514.3182731945778 95.705 0.46467 89.529 89.195 89.66 -6.1757 71 28 3 0 0 0 0.32871 1 63262 63262 15.847 1.9411 1 62803000 + 11264 18562 7669 7837 13057 13057 0.11035514099285137 FALPLTNLF 9 Unmodified _FALPLTNLF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.297119140625 2 518.29731 1034.58007 0.71914 0.00037273 -2.6342 -0.0013653 -1.9151 -0.00099257 518.2965814415912 101.88 0.09111 95.706 95.644 95.735 -6.1757 8 4 3 0 0 0 0.012158 1 68398 68398 74.396 32.302 1 5195800 11265 3762;16168 7670 7838 13058 13058 0.06416118971014839 FALPSELERSY 11 Unmodified _FALPSELERSY_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.3333129882812 2 656.33261 1310.65067 0.69584 0.0004567 2.0402 0.001339 2.736 0.0017957 656.3340163044226 64.24 0.21027 63.755 63.634 63.844 -0.48512 15 9 2 0 0 0 0.52864 1 35067 35067 14.957 7.8554 1 937970 11266 773 7671 7839 13059 13059 0.007767474980710176 FALRKTELY 9 Unmodified _FALRKTELY_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8182067871094 3 380.885241 1139.63389 -0.04534 -1.7269E-05 2.0353 0.0007752 1.9899 0.00075793 380.8857007763375 62.036 0.16475 62.036 61.907 62.072 0 11 6 2 0 0 0 0.21798 1 34583 34583 0.26902 0 1 711170 + 11267 23661 7672 7840 13060 13060 0.06966291402773095 FALSFWIC 8 Unmodified _FALSFWIC_ 0 0 0 ENST00000369393.7_1_6:90513083-90513194:-|nuORF ENST00000369393.7_1_6:90513083-90513194:-|nuORF ENST00000369393.7_1_6:90513083-90513194:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7439270019531 2 493.743857 985.47316 0.84409 0.00041676 -0.2204 -0.00010882 0.62369 0.00030794 493.74388933787907 80.308 0.37175 74.132 73.924 74.296 -6.1757 34 21 2 0 0 0 0.57408 1 52628 52628 28.173 28.173 1 13316000 11268 12304 7673 7841 13061 13061 -0.02015754514980017 FALVSQAY 8 Unmodified _FALVSQAY_ 0 0 0 nc|ENSG00000198612|Q99627-2|COPS8;ENSG00000198612|ENST00000354371|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7361755371094 2 449.737086 897.459619 0.0084869 3.8169E-06 -1.3451 -0.00060495 -1.3366 -0.00060113 449.73653070908944 60.204 0.19973 59.714 59.607 59.806 -0.49079 15 9 2 0 0 0 0.61999 1 32779 32779 24.21 4.771 1 1815600 11269 10114 7674 7842 13062 13062 0.006787109774222699 FALVSQAY 8 Unmodified _FALVSQAY_ 0 0 0 nc|ENSG00000198612|Q99627-2|COPS8;ENSG00000198612|ENST00000354371|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 898.4656372070312 1 898.466895 897.459619 -0.55394 -0.0004977 -0.26795 -0.00024074 -0.82189 -0.00073844 898.4662955538638 60.228 0.23852 59.737 59.607 59.845 -0.49079 15 11 2 0 0 0 0.13832 1 32781 32781 89.427 38.572 1 3376100 11270 10114 7674 7842 13063 13063 0.006787109774222699 FALVSQAY 8 Unmodified _FALVSQAY_ 0 0 0 nc|ENSG00000198612|Q99627-2|COPS8;ENSG00000198612|ENST00000354371|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 898.4654541015625 1 898.466895 897.459619 0.49786 0.00044731 -0.21576 -0.00019386 0.2821 0.00025345 898.4659824217376 67.324 0.31863 61.148 61.02 61.339 -6.1757 22 17 2 0 0 0 0.13832 1 43853 43853 89.427 31.955 1 8772700 11271 10114 7674 7842 13064 13064 0.006787109774222699 FALVSQAY 8 Unmodified _FALVSQAY_ 0 0 0 nc|ENSG00000198612|Q99627-2|COPS8;ENSG00000198612|ENST00000354371|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 nc|ENSG00000198612|Q99627-2|COPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7371520996094 2 449.737086 897.459619 0.91032 0.0004094 -0.35672 -0.00016043 0.5536 0.00024897 449.7367460514202 67.332 0.37169 61.156 60.981 61.352 -6.1757 27 20 2 0 0 0 0.21786 1 43858 43858 67.035 34.918 1 9996600 11272 10114 7674 7842 13065 13065 0.006787109774222699 FAMGGCID 8 Unmodified _FAMGGCID_ 0 0 0 ENST00000443800.5_1_5:141843586-141961439:+|nuORF ENST00000443800.5_1_5:141843586-141961439:+|nuORF ENST00000443800.5_1_5:141843586-141961439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1680908203125 2 407.167124 812.319696 NaN NaN NaN NaN NaN NaN NaN 86.27 1 86.27 85.77 86.77 0 0 0 0 0.97444 1 47789 47789 2.5775 1.7838 1 11273 13431 7675 7843 13066 13066 -0.09397112622957593 FANDDRHVM 9 Unmodified _FANDDRHVM_ 0 0 0 ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8350219726562 3 368.834552 1103.48183 0.76349 0.0002816 0.55757 0.00020565 1.3211 0.00048725 368.8348032237749 23.397 0.29519 20.619 20.509 20.804 -2.7784 35 17 3 0 0 0 0.21643 1 12651 12651 15.739 1.8326 1 4843200 11274 7309 7676 7844 13067 13067 -0.06577432616450096 FANEEGEAQKF 11 Unmodified _FANEEGEAQKF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.2911376953125 2 635.290942 1268.56733 -0.034937 -2.2195E-05 0.31009 0.00019699 0.27515 0.0001748 635.2910705607827 31.152 0.28151 31.152 30.995 31.276 0 39 13 4 0 0 0 0.00036894 1 16181 16181 90.135 68.598 1 11779000 11275 7756 7677 7845 13068 13068 -0.05620988949817729 FANEEGEAQKF 11 Unmodified _FANEEGEAQKF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MSMS AL20221201_MKP_PDAC_01 4 635.2911987304688 2 635.290942 1268.56733 NaN NaN NaN NaN NaN NaN NaN 35.464 1 31.271 30.771 31.771 -4.1928 0 0 0 0.0005868 1 20574 20574 83.278 58.287 1 11276 7756 7677 7845 13069 13069 -0.05620988949817729 FANEEGEAQKF 11 Unmodified _FANEEGEAQKF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 634.8085327148438 2 635.290942 1268.56733 0.55551 0.00035291 -4.0964 -0.0026024 -3.5409 -0.0022495 635.2872085049025 35.54 0.29551 31.347 31.161 31.457 -4.1928 33 18 3 0 0 0 0.18099 1 20667 20667 40.239 26.333 1 17397000 11277 7756 7677 7845 13070 13070 -0.05620988949817729 FANEVSYGSI 10 Unmodified _FANEVSYGSI_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.758544921875 2 543.758746 1085.50294 -0.5433 -0.00029542 1.2629 0.00068672 0.71962 0.0003913 543.7590611500541 27.505 0.25189 27.505 27.427 27.679 0 26 11 3 0 0 0 0.38092 1 14175 14175 22.736 9.6938 1 3455900 + 11278 23834 7678 7846 13071 13071 -0.03639144035946629 FANEVSYGSI 10 Unmodified _FANEVSYGSI_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7583618164062 2 543.758746 1085.50294 -0.47893 -0.00026042 -0.1076 -5.8508E-05 -0.58652 -0.00031893 543.7587958804136 28.631 0.16154 28.631 28.6 28.761 0 12 7 2 0 0 0 0.29752 1 14822 14822 27.629 13.723 1 8248000 + 11279 23834 7678 7846 13072 13072 -0.03639144035946629 FANEVSYGSI 10 Unmodified _FANEVSYGSI_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7589721679688 2 543.758746 1085.50294 -0.25144 -0.00013672 0.89957 0.00048915 0.64813 0.00035242 543.7591977831283 31.791 0.36147 31.791 31.661 32.023 0 40 17 3 0 0 0 0.11755 1 16563 16563 43.858 13.222 1 24995000 + 11280 23834 7678 7846 13073 13073 -0.03639144035946629 FANEVSYGSI 10 Unmodified _FANEVSYGSI_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2496948242188 2 543.758746 1085.50294 -0.25144 -0.00013672 0.89957 0.00048915 0.64813 0.00035242 543.7591977831283 31.791 0.36147 31.791 31.661 32.023 0 40 17 3 0 0 0 0.22941 1 16543 16543 9.3831 0 1 24995000 + 11281 23834 7678 7846 13074 13074 -0.03639144035946629 FANIDQETY 9 Unmodified _FANIDQETY_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288464-27288860:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7516479492188 2 550.748379 1099.4822 0.173 9.5277E-05 0.90105 0.00049625 1.074 0.00059153 550.7486500225167 44.243 0.2109 44.243 44.131 44.342 0 26 10 3 0 0 0 0.07916 1 24036 24036 37.974 23.136 1 21856000 11282 3552 7679 7847 13075 13075 -0.06355734415592451 FANLPNQVY 9 Unmodified _FANLPNQVY_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000475109.5_1_7:35840829-35903188:+|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2722778320312 2 533.271824 1064.5291 0.4305 0.00022957 0.64958 0.0003464 1.0801 0.00057598 533.2722535203217 57.402 0.14787 56.912 56.816 56.964 -0.48974 10 6 2 0 0 0 0.095405 1 31180 31180 34.102 21.571 1 1841000 11283 3644 7680 7848 13076 13076 -0.0005883007379452465 FANLPVPE 8 Unmodified _FANLPVPE_ 0 0 0 ENST00000549111.5_1_12:103248818-103310977:-|nuORF ENST00000549111.5_1_12:103248818-103310977:-|nuORF ENST00000549111.5_1_12:103248818-103310977:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.736572265625 2 443.737086 885.459619 1.2873 0.00057122 -0.97897 -0.0004344 0.30833 0.00013682 443.7361131406054 20.523 0.19764 17.83 17.723 17.921 -2.693 12 9 2 0 0 0 0.79887 1 10925 10925 7.2892 2.0586 1 737660 11284 15146 7681 7849 13077 13077 0.01230710977426952 FANNHDHEFD 10 Unmodified _FANNHDHEFD_ 0 0 0 DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.2506103515625 2 623.249609 1244.48466 0.27346 0.00017043 -0.69316 -0.00043201 -0.4197 -0.00026158 623.24902674082 58.753 0.26913 58.753 58.583 58.853 0 28 11 3 0 0 0 0.67033 1 32690 32690 6.2058 0.47393 1 3489000 11285 239 7682 7850 13078 13078 -0.1277988595795705 FANNHDHEFD 10 Unmodified _FANNHDHEFD_ 0 0 0 DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant DNMT3A|p.Q615H|1|0.32|ENSG00000119772|chr2:25244161-25244161|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.2488403320312 2 623.249609 1244.48466 0.26513 0.00016524 -0.38476 -0.0002398 -0.11963 -7.4558E-05 623.2493060790956 59.486 0.21378 58.995 58.855 59.069 -0.49079 17 9 2 0 0 0 0.67033 1 32363 32363 6.2058 0.47393 1 1234300 11286 239 7682 7850 13079 13079 -0.1277988595795705 FANPEDCVAF 10 Carbamidomethyl (C) _FANPEDC(Carbamidomethyl (C))VAF_ FANPEDC(1)VAF FANPEDC(69)VAF 0 1 0 ENSG00000008394|ENST00000396210|MGST1;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2508544921875 2 585.250231 1168.48591 0.58469 0.00034219 -0.31478 -0.00018423 0.2699 0.00015796 585.2499072980552 68.133 0.43333 61.958 61.754 62.187 -6.1757 62 25 3 0 0 0 0.027759 2 44483 44346;44483 69.105 48.651 1 61781000 11287 389 7683 7851 13080;13081 13081 19 -0.09159387913405226 FANSASRKDY 10 Unmodified _FANSASRKDY_ 0 0 0 REV__nc|ENSG00000072071|O94910|ADGRL1;REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1896667480469 3 386.856122 1157.54654 -0.64723 -0.00025038 0.012189 4.7152E-06 -0.63504 -0.00024567 386.856476028457 29.94 0.2038 29.94 29.833 30.036 0 33 9 5 0 0 0 0.64628 1 15520 15520 7.9454 3.0484 1 4197400 + 11288 17506;21027 7684 7852 13082 13082 -0.025935345388234055 FANSASRKDY 10 Unmodified _FANSASRKDY_ 0 0 0 REV__nc|ENSG00000072071|O94910|ADGRL1;REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 386.856122 1157.54654 -0.64723 -0.00025038 0.012189 4.7152E-06 -0.63504 -0.00024567 386.856476028457 29.94 0.2038 29.94 29.833 30.036 0 0 0 NaN 7.9454 33 9 5 NaN NaN NaN NaN 0 NaN NaN 0 4197400 + 11289 17506;21027 7684 7852 -0.025935345388234055 FANVEEHSF 9 Unmodified _FANVEEHSF_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2672119140625 2 540.243264 1078.47197 0.31247 0.00016881 -0.020048 -1.0831E-05 0.29243 0.00015798 540.2432175960515 38.105 0.21467 38.105 37.969 38.184 0 19 10 2 0 0 0 0.024441 1 20376 20376 58.679 22.173 1 6991800 11290 277 7685 7853 13083 13083 -0.06412297350175322 FANVEEHSF 9 Unmodified _FANVEEHSF_ 0 0 0 ENSG00000004534|ENST00000266022|RBM6;nc|ENSG00000004534|P78332-3|RBM6 ENSG00000004534|ENST00000266022|RBM6 ENSG00000004534|ENST00000266022|RBM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2435913085938 2 540.243264 1078.47197 0.54464 0.00029424 -0.3011 -0.00016267 0.24353 0.00013157 540.2433564431941 43.566 0.35283 38.801 38.65 39.002 -4.7648 34 21 2 0 0 0 0.0036082 1 26455 26455 123.45 54.346 1 9230800 11291 277 7685 7853 13084 13084 -0.06412297350175322 FAPTFQYRV 9 Unmodified _FAPTFQYRV_ 0 0 0 REV__nc|ENSG00000109103|Q13432-2|UNC119 REV__nc|ENSG00000109103|Q13432-2|UNC119 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7939453125 2 564.795466 1127.57638 NaN NaN NaN NaN NaN NaN NaN 33.946 1 33.755 33.255 34.255 -0.19131 0 0 0 0.82396 1 17716 17716 4.756 0.42677 1 + 11292 18645 7686 7854 13085 13085 0.017694491971724347 FAQEEDSAMY 10 Unmodified _FAQEEDSAMY_ 0 0 0 nc|ENSG00000211796|A0A0A6YYK6|TRAV16 nc|ENSG00000211796|A0A0A6YYK6|TRAV16 nc|ENSG00000211796|A0A0A6YYK6|TRAV16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7369995117188 2 595.737154 1189.45975 0.35356 0.00021063 -0.32223 -0.00019197 0.031326 1.8662E-05 595.7370333639655 36.907 0.22256 36.907 36.775 36.997 0 17 10 2 0 0 0 0.68719 1 19600 19600 4.3292 0 1 1618800 11293 16531 7687 7855 13086 13086 -0.1273970187555733 FAQHQARL 8 Unmodified _FAQHQARL_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7650146484375 2 485.764501 969.514448 0.51785 0.00025155 0.71133 0.00034554 1.2292 0.00059709 485.7648944153926 94.787 0.2339 94.367 94.235 94.469 -0.42044 16 10 2 0 0 0 0.78849 1 51737 51737 9.3474 0 1 417500 + 11294 24348 7688 7856 13087 13087 0.02847142568691652 FAQKCRGCKSL 11 Unmodified _FAQKCRGCKSL_ 0 0 0 REV__nc|ENSG00000143499|Q9NRG4-2|SMYD2 REV__nc|ENSG00000143499|Q9NRG4-2|SMYD2 MSMS AL20221201_MKP_PDAC_01 4 414.2177124023438 3 414.214487 1239.62163 NaN NaN NaN NaN NaN NaN NaN 16.964 1 14.377 13.877 14.877 -2.5866 0 0 0 0.82089 1 8829 8829 11.065 0.75005 1 + 11295 20644 7689 7857 13088 13088 0.011406083964175195 FARKAVSKIK 10 Unmodified _FARKAVSKIK_ 0 0 0 REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF REV__ENST00000495037.1_1_3:66430689-66454678:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.368408203125 2 574.369133 1146.72371 NaN NaN NaN NaN NaN NaN NaN 104.19 1 98.011 97.511 98.511 -6.1757 0 0 0 0.99388 1 69790 69790 1.3295 0.80477 1 + 11296 20733 7690 7858 13089 13089 0.15621965801983606 FARKWKVA 8 Unmodified _FARKWKVA_ 0 0 0 REV__ENST00000277141.10_2_9:88967948-88968005:-|nuORF REV__ENST00000277141.10_2_9:88967948-88968005:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.3067321777344 2 503.303262 1004.59197 NaN NaN NaN NaN NaN NaN NaN 109.71 1 103.54 103.04 104.04 -6.1757 0 0 0 0.97444 1 73257 73257 0.69038 0 1 + 11297 25178 7691 7859 13090 13090 0.08985780504883678 FARLPEEEF 9 Unmodified _FARLPEEEF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2838745117188 2 569.282389 1136.55022 NaN NaN NaN NaN NaN NaN NaN 53.433 1 52.982 52.482 53.482 -0.45173 0 0 0 0.18351 1 28908 28908 32.786 17.947 1 11298 8706 7692 7860 13091 13091 -0.012588647649408813 FARPGDVEF 9 Unmodified _FARPGDVEF_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2548828125 2 519.256174 1036.49779 0.48237 0.00025047 -1.5829 -0.00082194 -1.1006 -0.00057147 519.255130881655 47.971 0.2149 47.618 47.516 47.73 -0.3526 25 10 3 0 0 0 0.05483 1 25734 25734 43.772 23.319 1 11424000 11299 3875 7693 7861 13092 13092 -0.01899403107904618 FARPGDVEF 9 Unmodified _FARPGDVEF_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MSMS AL20221201_MKP_PDAC_01 4 519.2561645507812 2 519.256174 1036.49779 NaN NaN NaN NaN NaN NaN NaN 53.649 1 47.844 47.344 48.344 -5.8042 0 0 0 0.39118 1 33936 33936 20.415 6.9067 1 11300 3875 7693 7861 13093 13093 -0.01899403107904618 FARRDFRKGS 10 Unmodified _FARRDFRKGS_ 0 0 0 ENSG00000145861|ENST00000652664|C1QTNF2 ENSG00000145861|ENST00000652664|C1QTNF2 ENSG00000145861|ENST00000652664|C1QTNF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.3386840820312 2 620.338895 1238.66324 NaN NaN NaN NaN NaN NaN NaN 20.442 1 20.452 19.952 20.952 0.010553 0 0 0 0.9997 1 10426 10426 0.40072 0 1 11301 5732 7694 7862 13094 13094 0.05345248471599007 FARVVGTL 8 Unmodified _FARVVGTL_ 0 0 0 ENST00000487433.6_1_13:50070383-50071245:+|nuORF ENST00000487433.6_1_13:50070383-50071245:+|nuORF ENST00000487433.6_1_13:50070383-50071245:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7159118652344 2 431.760895 861.507237 0.69049 0.00029813 -0.013547 -5.8492E-06 0.67695 0.00029228 431.76077263180497 47.601 0.22578 47.562 47.435 47.661 -0.038643 17 10 2 0 0 0 8.7369 1 25603 25603 8.5933 0.68312 1 3223200 11302 14204 7695 7863 13095 13095 0.07094409968294713 FARYDFEDD 9 Unmodified _FARYDFEDD_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508176.1_1_5:147820712-147820817:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1647033691406 3 393.164732 1176.47237 0.33363 0.00013117 0.77458 0.00030454 1.1082 0.00043571 393.16501355185574 63.537 0.20158 63.051 62.969 63.171 -0.48617 13 8 2 0 0 0 0.58466 1 34672 34672 1.1933 0.41681 1 1074000 11303 5735 7696 7864 13096 13096 -0.10880922420983552 FASAAREMELF 11 Unmodified _FASAAREMELF_ 0 0 0 ENST00000524967.5_1_1:169256457-169336948:-|nuORF;nc|ENSG00000143156|Q9Y5B8-2|NME7;ENSG00000143156|ENST00000367811|NME7 ENST00000524967.5_1_1:169256457-169336948:-|nuORF ENST00000524967.5_1_1:169256457-169336948:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3463134765625 2 636.308081 1270.60161 1.2575 0.00080013 -1.7203 -0.0010946 -0.46281 -0.00029449 636.3071077823718 82.424 0.31601 82.486 82.321 82.637 0.062004 24 11 3 0 0 0 0.28953 1 45548 45548 13.042 2.9685 1 4147000 11304 5469 7697 7865 13097 13097 -0.022868640625802072 FASDPILY 8 Unmodified _FASDPILY_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF;ENST00000564276.1_1_15:72502555-72511438:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4676513671875 1 925.466561 924.459284 0.26995 0.00024983 0.53234 0.00049266 0.80229 0.00074249 925.4668974162837 63.836 0.3613 63.836 63.685 64.046 0 21 14 2 0 0 0 0.35156 2 35591 35591;35686 49.669 19.606 1 963820 11305 954 7698 7866 13098;13099 13098 -0.005967087424323836 FASDVQFVL 9 Unmodified _FASDVQFVL_ 0 0 0 nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2693481445312 2 513.26875 1024.52295 0.42463 0.00021795 0.59825 0.00030706 1.0229 0.00052501 513.2689939153363 83.394 0.45335 82.896 82.672 83.125 -0.49751 44 18 3 0 0 0 0.070838 2 45617 45617;45718 39.957 11.47 1 2381500 11306 1714 7699 7867 13100;13101 13100 0.011666516946661432 FASDVQFVL 9 Unmodified _FASDVQFVL_ 0 0 0 nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1025.526977539062 1 1025.53022 1024.52295 1.1809 0.001211 0.49434 0.00050696 1.6752 0.001718 1025.5302440396588 90.724 0.33104 84.548 84.372 84.703 -6.1757 32 19 2 0 0 0 0.0082485 1 59857 59857 96.285 44.016 1 8288700 11307 1714 7699 7867 13102 13102 0.011666516946661432 FASDVQFVL 9 Unmodified _FASDVQFVL_ 0 0 0 nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2681884765625 2 513.26875 1024.52295 1.2302 0.00063141 -0.096728 -4.9647E-05 1.1334 0.00058176 513.2686191316004 90.723 0.65442 84.547 84.219 84.873 -6.1757 113 38 4 0 0 0 0.026094 2 59862 59862;59992 57.471 30.588 1 55468000 11308 1714 7699 7867 13103;13104 13103 0.011666516946661432 FASDVQFVL 9 Unmodified _FASDVQFVL_ 0 0 0 nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.26875 1024.52295 1.1334 0.00058174 0.28459 0.00014607 1.418 0.00072781 513.2688136845338 82.788 0.3031 82.85 82.691 82.994 0.062004 -0.022987 -0.0002454 NaN 39.957 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2199800 11309 1714 7699 7867 0.011666516946661432 FASEAGSVC 9 Unmodified _FASEAGSVC_ 0 0 0 nc|ENSG00000102908|O94916-3|NFAT5;ENST00000393742.6_1_16:69600141-69680463:+|nuORF nc|ENSG00000102908|O94916-3|NFAT5 nc|ENSG00000102908|O94916-3|NFAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.3685913085938 1 870.366195 869.358918 0.84747 0.00073761 0.14202 0.00012361 0.98949 0.00086122 870.3668046117091 101.35 0.12468 95.171 95.107 95.231 -6.1757 11 6 2 0 0 0 0.14602 1 67986 67986 28.487 3.0875 1 37988000 11310 12713 7700 7868 13105 13105 -0.08098689067730902 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4949951171875 1 965.493838 964.486562 0.50986 0.00049226 -0.21294 -0.00020559 0.29692 0.00028667 965.4930766647919 57.404 0.2923 57.404 57.239 57.532 0 25 12 3 0 0 0 0.013323 2 31907 31907;32013 71.134 38.828 1 3045700 11311 4851 7701 7869 13106;13107 13106 0.002897747979545784 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2508239746094 2 483.250557 964.486562 0.61955 0.0002994 -0.17622 -8.516E-05 0.44333 0.00021424 483.25064085328825 57.407 0.2923 57.407 57.239 57.532 0 28 12 3 0 0 0 0.010877 1 31922 31922 77.984 33.577 1 9147100 11312 4851 7701 7869 13108 13108 0.002897747979545784 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2492980957031 2 483.250557 964.486562 0.46042 0.0002225 -0.63838 -0.0003085 -0.17795 -8.5997E-05 483.250065080008 57.928 0.28918 57.438 57.288 57.577 -0.48974 28 13 3 0 0 0 0.023164 1 31468 31468 60.39 26.287 1 4609100 11313 4851 7701 7869 13109 13109 0.002897747979545784 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.4951782226562 1 965.493838 964.486562 0.2525 0.00024379 -0.70465 -0.00068034 -0.45216 -0.00043655 965.4928142450319 57.935 0.24617 57.445 57.31 57.556 -0.48974 14 11 2 0 0 0 0.013323 1 31501 31501 71.134 35.089 1 1132600 11314 4851 7701 7869 13110 13110 0.002897747979545784 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.4938354492188 1 965.493838 964.486562 0.028212 2.7238E-05 1.2182 0.0011762 1.2464 0.0012034 965.4938705483692 65.65 0.29047 59.475 59.285 59.576 -6.1757 25 16 2 0 0 0 0.0082281 2 42529 42529;42700 96.285 52.865 1 11675000 11315 4851 7701 7869 13111;13112 13111 0.002897747979545784 FASEVSNVL 9 Unmodified _FASEVSNVL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2501525878906 2 483.250557 964.486562 0.26707 0.00012906 -0.35604 -0.00017205 -0.08897 -4.2995E-05 483.25025500355747 65.61 0.50201 59.434 59.207 59.709 -6.1757 44 29 2 0 0 0 0.010877 2 42694 42550;42694 77.984 43.882 1 22198000 11316 4851 7701 7869 13113;13114 13114 0.002897747979545784 FASFIDKVRF 10 Unmodified _FASFIDKVRF_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;ENSG00000139648|ENST00000267119|KRT71;nc|ENSG00000186049|Q86Y46-2|KRT73;CON__Q6IME9;CON__Q3SY84;CON__Q9R0H5;CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;CON__Q3TTY5;ENSG00000186049|ENST00000305748|KRT73;CON__P07744;CON__Q7RTS7;ENSG00000170484|ENST00000305620|KRT74;CON__Q32MB2;ENSG00000170423|ENST00000304620|KRT78;CON__Q8N1N4-2;CON__Q7RTT2;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1 ENSG00000167768|ENST00000252244|KRT1;CON__P05787;CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5;nc|ENSG00000170486|Q14CN4-3|KRT72 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.56103515625 3 410.560758 1228.66044 1.1015 0.00045224 0.11177 4.5887E-05 1.2133 0.00049813 410.5607695499764 90.009 0.2672 83.833 83.721 83.988 -6.1757 25 14 2 0 0 0 0.018732 1 59425 59425 74.772 38.776 1 7241500 + 11317 165;199;7667;177;9374;170;9329;211;185 7702 7870 13115 13115 0.05525980294078181 FASHVSPEV 9 Unmodified _FASHVSPEV_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7430419921875 2 486.742899 971.471246 -0.81577 -0.00039707 0.61737 0.0003005 -0.1984 -9.657E-05 486.7431619893708 32.205 0.3115 32.205 32.023 32.334 0 37 15 3 0 0 0 0.0082281 1 16770 16770 92.822 46.801 1 15078000 11318 10694 7703 7871 13116 13116 -0.01563091999230437 FASHVSPEV 9 Unmodified _FASHVSPEV_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MSMS AL20221201_MKP_PDAC_01 4 486.7432556152344 2 486.742899 971.471246 NaN NaN NaN NaN NaN NaN NaN 36.838 1 32.555 32.055 33.055 -4.2835 0 0 0 0.050352 1 21549 21549 57.471 25.166 1 11319 10694 7703 7871 13117 13117 -0.01563091999230437 FASHVSPEV 9 Unmodified _FASHVSPEV_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MSMS AL20221201_MKP_PDAC_01 4 486.7434997558594 2 486.742899 971.471246 NaN NaN NaN NaN NaN NaN NaN 37.02 1 32.736 32.236 33.236 -4.2835 0 0 0 0.035065 1 21675 21675 64.236 26.262 1 11320 10694 7703 7871 13118 13118 -0.01563091999230437 FASKEIAENAL 11 Unmodified _FASKEIAENAL_ 0 0 0 nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;ENST00000469172.5_1_10:70097616-70097877:+|nuORF nc|ENSG00000096746|P31942-3|HNRNPH3 nc|ENSG00000096746|P31942-3|HNRNPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8129272460938 2 596.814053 1191.61355 -0.3451 -0.00020596 0.28522 0.00017022 -0.059878 -3.5736E-05 596.8141560948499 41.777 0.2752 41.777 41.626 41.901 0 38 13 4 0 0 0 5.0677E-15 1 22524 22524 135.72 84.303 1 25955000 11321 1676 7704 7872 13119 13119 0.025410759522856097 FASKEIAENAL 11 Unmodified _FASKEIAENAL_ 0 0 0 nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;ENST00000469172.5_1_10:70097616-70097877:+|nuORF nc|ENSG00000096746|P31942-3|HNRNPH3 nc|ENSG00000096746|P31942-3|HNRNPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.81494140625 2 596.814053 1191.61355 1.1778 0.00070292 -0.084179 -5.0239E-05 1.0936 0.00065269 596.8139344058336 47.682 0.38075 42.448 42.26 42.641 -5.2339 64 22 4 0 0 0 4.3583E-10 2 29667 29538;29667 118.21 74.228 1 40598000 11322 1676 7704 7872 13120;13121 13121 0.025410759522856097 FASKEIAENAL 11 Unmodified _FASKEIAENAL_ 0 0 0 nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;ENST00000469172.5_1_10:70097616-70097877:+|nuORF nc|ENSG00000096746|P31942-3|HNRNPH3 nc|ENSG00000096746|P31942-3|HNRNPH3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 596.814053 1191.61355 -0.10528 -6.2835E-05 -1.7435 -0.0010405 -1.8488 -0.0011034 596.8123687460773 42.039 0.17506 41.732 41.663 41.838 -0.30682 -0.022608 -0.0023224 NaN 135.72 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6442700 11323 1676 7704 7872 0.025410759522856097 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.8694458007812 2 636.869163 1271.72377 0.064569 4.1122E-05 0.45149 0.00028754 0.51606 0.00032866 636.8693804623236 80.681 0.43327 80.681 80.452 80.885 0 64 20 4 0 0 0 0.073778 2 44828 44734;44828 45.74 20.749 1 6502600 + 11324 17002 7705 7873 13122;13123 13123 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.371337890625 2 636.869163 1271.72377 0.064569 4.1122E-05 0.45149 0.00028754 0.51606 0.00032866 636.8693804623236 80.681 0.43327 80.681 80.452 80.885 0 64 20 4 0 0 0 0.26516 1 44734 44734 27.223 13.608 1 6502600 + 11325 17002 7705 7873 13124 13124 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8692016601562 2 636.869163 1271.72377 0.44751 0.000285 -0.42672 -0.00027176 0.020791 1.3241E-05 636.868957316708 75.408 0.60458 74.931 74.63 75.235 -0.47714 70 31 3 0 0 0 0.20054 3 41250 41145;41250;41350 32.037 14.595 1 3223500 + 11326 17002 7705 7873 13125;13126;13127 13126 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8683471679688 2 636.869163 1271.72377 0.11295 7.1936E-05 0.50015 0.00031853 0.6131 0.00039046 636.8693589020855 76.014 0.6027 75.535 75.232 75.835 -0.47945 45 25 2 0 0 0 0.49694 2 41552 41552;41656 16.566 6.5131 1 796040 + 11327 17002 7705 7873 13128;13129 13128 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8695678710938 2 636.869163 1271.72377 0.2441 0.00015546 0.23682 0.00015082 0.48092 0.00030628 636.8693262227025 74.812 0.69182 74.858 74.435 75.127 0.045959 96 31 4 0 0 0 0.047603 2 41214 41108;41214 51.415 28.757 1 13640000 + 11328 17002 7705 7873 13130;13131 13131 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8699340820312 2 636.869163 1271.72377 0.20235 0.00012887 0.40823 0.00025999 0.61058 0.00038886 636.8692305010252 75.457 0.79892 75.503 75.087 75.886 0.045967 116 37 4 0 0 0 0.08701 4 41595 41491;41595;41703;41826 43.982 20.242 1 13764000 + 11329 17002 7705 7873 13132;13133;13134;13135 13133 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2500915527344 3 424.915201 1271.72377 0.053147 2.2583E-05 0.64687 0.00027487 0.70002 0.00029745 425.2500622745287 80.314 0.10538 80.372 80.328 80.434 0.057587 6 4 2 0 0 0 0.26767 1 44406 44406 18.34 8.5755 1 10253000 + 11330 17002 7705 7873 13136 13136 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8709716796875 2 636.869163 1271.72377 0.92682 0.00059026 2.0151 0.0012834 2.9419 0.0018736 636.8708735062761 82.651 0.78038 82.713 82.347 83.127 0.062004 42 29 2 0 0 0 0.39848 2 45703 45703;45852 21.59 6.6749 1 3916000 + 11331 17002 7705 7873 13137;13138 13137 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8695068359375 2 636.869163 1271.72377 0.49945 0.00031809 0.71882 0.0004578 1.2183 0.00077588 636.8696048475922 83.121 0.1762 83.184 83.129 83.305 0.063171 9 6 2 0 0 0 0.39848 1 46029 46029 21.59 10.095 1 2305500 + 11332 17002 7705 7873 13139 13139 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3244018554688 2 636.869163 1271.72377 0.2441 0.00015546 0.23682 0.00015082 0.48092 0.00030628 636.8693262227025 74.812 0.69182 74.858 74.435 75.127 0.045959 96 31 4 0 0 0 0.29031 1 41326 41326 13.615 6.5131 1 13640000 + 11333 17002 7705 7873 13140 13140 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.32373046875 2 636.869163 1271.72377 0.20235 0.00012887 0.40823 0.00025999 0.61058 0.00038886 636.8692305010252 75.457 0.79892 75.503 75.087 75.886 0.045967 116 37 4 0 0 0 0.28583 1 41426 41426 16.566 7.0219 1 13764000 + 11334 17002 7705 7873 13141 13141 0.09877921011320723 FASLIDQIPLR 11 Unmodified _FASLIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 636.869163 1271.72377 0.11295 7.1936E-05 0.50015 0.00031853 0.6131 0.00039046 636.8693589020855 76.014 0.6027 75.535 75.232 75.835 -0.47945 0.015963 8.1874E-05 NaN 43.982 45 25 2 NaN NaN NaN NaN 0 NaN NaN 0 796040 + 11335 17002 7705 7873 0.09877921011320723 FASVIFQTRK 10 Unmodified _FASVIFQTRK_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8441162109375 2 598.842948 1195.67134 2.8381 0.0016996 -1.0285 -0.00061593 1.8095 0.0010836 598.8423041293256 97.389 0.38208 97.371 97.195 97.577 -0.018188 44 13 4 0 0 0 0.45406 2 54166 54054;54166 27.629 7.2143 1 81948000 11336 2490 7706 7874 13142;13143 13143 0.08133382668370359 FASWTIFRF 9 Unmodified _FASWTIFRF_ 0 0 0 ENST00000466324.1_1_11:64444212-64481216:-|nuORF ENST00000466324.1_1_11:64444212-64481216:-|nuORF ENST00000466324.1_1_11:64444212-64481216:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.8736877441406 3 392.206315 1173.59712 NaN NaN NaN NaN NaN NaN NaN 56.949 1 50.973 50.473 51.473 -5.9769 0 0 0 0.46757 1 36385 36385 11.495 1.3441 1 11337 13752 7707 7875 13144 13144 0.0172603957685169 FATAHFVSAL 10 Unmodified _FATAHFVSAL_ 0 0 0 REV__ENSG00000149257|ENST00000358171|SERPINH1 REV__ENSG00000149257|ENST00000358171|SERPINH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2819213867188 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 62.788 1 62.767 62.267 63.267 -0.021614 0 0 0 0.38297 1 34325 34325 32.305 6.0373 1 + 11338 20988 7708 7876 13145 13145 0.021057603058579843 FATDGAGLVIV 11 Unmodified _FATDGAGLVIV_ 0 0 0 REV__ENSG00000188641|ENST00000370192|DPYD REV__ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7952270507812 2 531.795132 1061.57571 0.93362 0.00049649 -0.90731 -0.0004825 0.026313 1.3993E-05 531.794665522866 79.714 0.32458 79.224 79.053 79.377 -0.48932 27 14 2 0 0 0 0.56638 1 43629 43629 13.042 0.51092 1 3973300 + 11339 23721 7709 7877 13146 13146 0.04738609757464474 FATLNSLQGLF 11 Unmodified _FATLNSLQGLF_ 0 0 0 ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1;ENST00000540207.1_1_12:131606534-131623805:+|nuORF;nc|ENSG00000111452|Q6QNK2-3|ADGRD1;nc|ENSG00000111452|Q6QNK2-2|ADGRD1 ENSG00000111452|ENST00000261654|ADGRD1 ENSG00000111452|ENST00000261654|ADGRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.82666015625 2 605.826963 1209.63937 0.2135 0.00012934 0.30011 0.00018181 0.5136 0.00031115 605.8270270739359 75.534 0.40765 75.582 75.389 75.797 0.047951 42 18 3 0 0 0 0.58245 1 41622 41622 15.248 0 1 4967900 11340 2792 7710 7878 13147 13147 0.042939701945670095 FATLVSDRF 9 Unmodified _FATLVSDRF_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;nc|ENSG00000125450|Q9BW27-2|NUP85;ENST00000581104.5_1_17:73208151-73231006:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2792358398438 2 528.279649 1054.54475 0.69774 0.0003686 -0.39673 -0.00020958 0.30101 0.00015902 528.2790602483856 57.005 0.25441 56.937 56.78 57.034 -0.068737 16 12 2 0 0 0 0.069655 1 31030 31030 40.239 11.752 1 2612600 11341 3852 7711 7879 13148 13148 0.0196545644323578 FATPPSSTY 9 Unmodified _FATPPSSTY_ 0 0 0 nc|ENSG00000176623|Q96DB5-3|RMDN1;nc|ENSG00000176623|Q96DB5-2|RMDN1;ENSG00000176623|ENST00000406452|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 nc|ENSG00000176623|Q96DB5-3|RMDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7300720214844 2 485.729458 969.444362 0.60778 0.00029522 -0.0055562 -2.6988E-06 0.60222 0.00029252 485.72958815048014 45.536 0.53115 40.581 40.332 40.863 -4.9549 74 35 3 0 0 0 0.23158 1 28115 28115 20.454 1.0146 1 39877000 11342 8609 7712 7880 13149 13149 -0.04158200610424956 FATPPYQPPYG 11 Unmodified _FATPPYQPPYG_ 0 0 0 REV__ENST00000469266.1_1_3:146246325-146262351:-|nuORF REV__ENST00000469266.1_1_3:146246325-146262351:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.299072265625 2 619.298039 1236.58152 0.49045 0.00030374 -0.0012643 -7.8297E-07 0.48919 0.00030295 619.2978515860034 62.899 1.8068 62.413 61.511 63.318 -0.48617 131 85 3 0 0 0 0.58245 3 34592 34495;34592;34698 10.8 3.6978 1 5367400 + 11343 23703 7713 7881 13150;13151;13152 13151 -0.027302917308816177 FATSLSIVL 9 Unmodified _FATSLSIVL_ 0 0 0 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.55224609375 1 950.55571 949.548434 0.28081 0.00026693 -1.1698 -0.001112 -0.889 -0.00084504 950.5535279899959 99.611 0.094749 93.435 93.365 93.46 -6.1757 7 5 2 0 0 0 0.010877 1 66370 66370 77.984 29.638 1 8392400 11344 2016 7714 7882 13153 13153 0.07164126217105604 FATSTNLFYL 10 Unmodified _FATSTNLFYL_ 0 0 0 ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8008422851562 2 588.800414 1175.58628 NaN NaN NaN NaN NaN NaN NaN 58.692 1 58.632 58.132 59.132 -0.060719 0 0 0 0.91523 1 31976 31976 7.2892 1.5288 1 11345 8099 7715 7883 13154 13154 0.005505924119006522 FATTAVVM 8 Oxidation (M) _FATTAVVM(Oxidation (M))_ FATTAVVM(1) FATTAVVM(63) 0 0 1 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.4281616210938 1 855.428067 854.42079 0.38377 0.00032829 0.61762 0.00052833 1.0014 0.00085662 855.4286964332395 38.916 0.31156 38.916 38.747 39.059 0 23 13 2 0 0 0 0.24182 2 20762 20762;20876 63.394 26.928 1 1712000 11346 2016 7716 7884 13155;13156 13155 347 -0.012243376485798763 FATTAVVM 8 Unmodified _FATTAVVM_ 0 0 0 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-3|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 839.435302734375 1 839.433152 838.425876 0.92129 0.00077336 0.53374 0.00044804 1.455 0.0012214 839.4336132051819 63.03 0.40298 56.854 56.653 57.056 -6.1757 29 20 2 0 0 0 0.2655 2 40663 40663;40822 59.795 16.827 1 12848000 11347 2016 7716 7885 13157;13158 13157 0.0001996621402895471 FATTLKACTL 10 Unmodified _FATTLKACTL_ 0 0 0 REV__ENSG00000126749|ENST00000599672|EMG1 REV__ENSG00000126749|ENST00000599672|EMG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2634887695312 2 534.791535 1067.56852 -0.028092 -1.5023E-05 -3.6105 -0.0019309 -3.6386 -0.0019459 534.7911409330875 61.537 0.10684 61.048 61.009 61.116 -0.48932 7 4 2 0 0 0 0.23227 1 33548 33548 10.824 2.2306 1 553610 + 11348 19556 7717 7886 13159 13159 0.037435538853969774 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5244140625 3 406.524372 1216.55129 0.28747 0.00011686 -0.32828 -0.00013345 -0.040804 -1.6588E-05 406.52418579910375 43.111 0.33305 43.111 42.947 43.28 0 54 16 4 0 0 0 0.024981 2 23353 23353;23470 65.474 55.709 1 119750000 11349 8147 7718 7887 13160;13161 13160 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.28173828125 2 609.28292 1216.55129 0.3327 0.00020271 -0.90676 -0.00055247 -0.57406 -0.00034977 609.2823590106062 43.086 0.23679 43.086 42.985 43.222 0 25 11 3 0 0 0 4.7059E-07 1 23368 23368 136.33 101.93 1 13661000 11350 8147 7718 7887 13162 13162 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5243530273438 3 406.524372 1216.55129 0.22093 8.9812E-05 -0.14366 -5.84E-05 0.07727 3.1412E-05 406.5243204307426 43.355 0.23654 43.045 42.908 43.144 -0.31039 29 11 3 0 0 0 0.017277 1 23039 23039 74.2 56.336 1 55233000 11351 8147 7718 7887 13163 13163 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.2833251953125 2 609.28292 1216.55129 0.23468 0.00014298 0.47191 0.00028753 0.70659 0.00043051 609.2830446182397 43.387 0.13609 43.077 42.969 43.105 -0.31039 11 6 2 0 0 0 0.0073675 1 23091 23091 92.491 73.129 1 7368200 11352 8147 7718 7887 13164 13164 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5249633789062 3 406.524372 1216.55129 1.1493 0.00046721 0.049502 2.0124E-05 1.1988 0.00048733 406.52434538121236 48.42 0.47923 43.186 42.923 43.403 -5.2339 96 28 4 0 0 0 0.017277 3 30165 30038;30165;30302 65.474 51.955 1 345140000 11353 8147 7718 7887 13165;13166;13167 13166 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2837524414062 2 609.28292 1216.55129 0.83354 0.00050786 -0.53598 -0.00032657 0.29756 0.0001813 609.2830559416684 48.406 0.6098 43.172 42.774 43.384 -5.2339 80 36 3 0 0 0 3.1238E-05 2 30189 30062;30189 123.45 93.61 1 108730000 11354 8147 7718 7887 13168;13169 13169 -0.048326503960424816 FAVDLEHHSY 10 Unmodified _FAVDLEHHSY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 406.524372 1216.55129 0.35618 0.00014479 0.051227 2.0825E-05 0.4074 0.00016562 406.5242781976415 42.975 0.17493 42.96 42.888 43.063 -0.015667 -0.11577 0.0001851 NaN 74.2 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2548900 11355 8147 7718 7887 -0.048326503960424816 FAVGVQQVL 9 Unmodified _FAVGVQQVL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7786560058594 2 480.779285 959.544017 0.58856 0.00028297 -0.44137 -0.0002122 0.14719 7.0767E-05 480.77904087139206 71.222 0.293 70.744 70.568 70.861 -0.47736 25 12 3 0 0 0 0.040472 1 38967 38967 49.669 24.995 1 2015700 11356 10362 7719 7888 13170 13170 0.06262661794187352 FAVIAHVGM 9 Oxidation (M) _FAVIAHVGM(Oxidation (M))_ FAVIAHVGM(1) FAVIAHVGM(67) 0 0 1 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.752685546875 2 480.752213 959.489873 NaN NaN NaN NaN NaN NaN NaN 45.592 1 45.268 44.768 45.768 -0.32425 0 0 0 0.029035 1 24364 24364 67.413 24.445 1 11357 9309 7720 7889 13171 13171 1535 0.00850746370986144 FAVIAHVGM 9 Oxidation (M) _FAVIAHVGM(Oxidation (M))_ FAVIAHVGM(1) FAVIAHVGM(80) 0 0 1 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7529907226562 2 480.752213 959.489873 0.070475 3.3881E-05 -0.074027 -3.5588E-05 -0.0035511 -1.7072E-06 480.7521033279297 45.284 0.16901 45.256 45.153 45.322 -0.028011 11 8 2 0 0 0 0.01018 1 24323 24323 79.935 36.967 1 5928800 11358 9309 7720 7889 13172 13172 1535 0.00850746370986144 FAVIAHVGM 9 Unmodified _FAVIAHVGM_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2561645507812 2 472.754756 943.494958 0.89517 0.00042319 -0.56535 -0.00026727 0.32981 0.00015592 472.7545266954756 63.055 0.41504 56.88 56.7 57.115 -6.1757 41 21 3 0 0 0 0.028712 2 40645 40645;40790 56.048 27.875 1 30978000 11359 9309 7720 7890 13173;13174 13173 0.02095050233594975 FAVIAHVGM 9 Unmodified _FAVIAHVGM_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 472.754756 943.494958 0.27384 0.00012946 -0.36142 -0.00017087 -0.087583 -4.1405E-05 472.7544988144691 56.689 0.14032 56.621 56.538 56.678 -0.068737 -0.12952 0.00013565 NaN 56.048 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1312300 11360 9309 7720 7890 0.02095050233594975 FAVLEDHTL 9 Unmodified _FAVLEDHTL_ 0 0 0 ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7250366210938 2 522.771657 1043.52876 -0.1557 -8.1394E-05 -2.6334 -0.0013767 -2.7891 -0.0014581 522.7701646511675 55.317 0.24362 55.317 55.193 55.437 0 16 10 2 0 0 0 0.11012 1 30700 30700 36.044 19.102 1 2207100 11361 6191 7721 7891 13175 13175 0.008737502063240754 FAWHRSPRPEL 11 Unmodified _FAWHRSPRPEL_ 0 0 0 ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A ENSG00000105472|ENST00000250340|CLEC11A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.3682861328125 2 698.367653 1394.72075 NaN NaN NaN NaN NaN NaN NaN 28.728 1 28.758 28.258 29.258 0.029564 0 0 0 0.94307 1 14965 14965 0.30703 0 1 11362 2326 7722 7892 13176 13176 0.039180906771662194 FAWTWARFF 9 Unmodified _FAWTWARFF_ 0 0 0 ENST00000577961.5_1_18:723830-723905:-|nuORF ENST00000577961.5_1_18:723830-723905:-|nuORF ENST00000577961.5_1_18:723830-723905:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.30224609375 2 616.306001 1230.59745 NaN NaN NaN NaN NaN NaN NaN 55.24 1 55.172 54.672 55.672 -0.068737 0 0 0 0.82015 1 30016 30016 5.2307 0.47466 1 11363 15537 7723 7893 13177 13177 -0.008625407033150623 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2550048828125 2 546.25584 1090.49713 0.28583 0.00015614 0.50244 0.00027446 0.78828 0.0004306 546.255982030621 50.469 0.4546 50.469 50.209 50.664 0 73 20 5 0 0 0 0.036857 2 27771 27771;27884 51.63 26.23 1 141750000 11364 10306 7724 7894 13178;13179 13178 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2566528320312 2 546.25584 1090.49713 0.20394 0.0001114 0.87503 0.00047799 1.079 0.0005894 546.2560913223234 49.016 0.29728 48.644 48.48 48.778 -0.37172 35 14 3 0 0 0 0.029718 1 26306 26306 55.503 30.103 1 10192000 11365 10306 7724 7894 13180 13180 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2560424804688 2 546.25584 1090.49713 0.09141 4.9933E-05 0.56282 0.00030745 0.65423 0.00035738 546.2560573790028 51.064 0.39881 50.651 50.438 50.836 -0.41351 55 19 4 0 0 0 0.014417 2 27456 27456;27562 69.105 36.799 1 41644000 11366 10306 7724 7894 13181;13182 13181 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2548828125 2 546.25584 1090.49713 0.79131 0.00043226 -0.26599 -0.0001453 0.52532 0.00028696 546.2554586037686 50.675 0.2575 50.621 50.47 50.728 -0.053871 28 12 3 0 0 0 0.2324 1 27377 27377 20.415 1.1575 1 3354700 11367 10306 7724 7894 13183 13183 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2560424804688 2 546.25584 1090.49713 0.80379 0.00043908 -0.38078 -0.000208 0.42302 0.00023107 546.2555992665356 54.839 0.38672 48.973 48.763 49.15 -5.8653 61 23 3 0 0 0 0.044296 1 34861 34861 47.594 16.958 1 75076000 11368 10306 7724 7894 13184 13184 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2542114257812 2 546.25584 1090.49713 0.52911 0.00028903 0.22484 0.00012282 0.75395 0.00041185 546.2554767306677 56.874 0.51385 50.897 50.668 51.181 -5.9769 88 30 4 0 0 0 0.023481 2 36248 36248;36382 60.074 29.437 1 288180000 11369 10306 7724 7894 13185;13186 13185 -0.04450242547613925 FAYDGKDYL 9 Unmodified _FAYDGKDYL_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.25584 1090.49713 0.29628 0.00016185 0.060793 3.3209E-05 0.35708 0.00019506 546.2554013062712 48.687 0.21701 48.643 48.536 48.753 -0.04369 -0.084285 -0.00068533 NaN 55.503 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1429900 11370 10306 7724 7894 -0.04450242547613925 FAYEEYRKDKI 11 Unmodified _FAYEEYRKDKI_ 0 0 0 nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.9176330566406 3 487.91727 1460.72998 0.99927 0.00048756 -0.43977 -0.00021457 0.5595 0.00027299 487.9172389152339 83.453 0.69571 77.277 77.005 77.7 -6.1757 82 36 3 0 0 0 0.70435 1 54779 54779 3.8459 1.2147 1 23439000 11371 3161 7725 7895 13187 13187 0.018043944521878075 FAYGDAPH 8 Unmodified _FAYGDAPH_ 0 0 0 REV__ENSG00000151491|ENST00000281172|EPS8 REV__ENSG00000151491|ENST00000281172|EPS8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.195556640625 2 439.195585 876.376617 NaN NaN NaN NaN NaN NaN NaN 93.053 1 93.053 92.553 93.553 0 0 0 0 0.97444 1 51450 51450 2.5775 0.27475 1 + 11372 21071 7726 7896 13188 13188 -0.06651605750585077 FAYIWSSV 8 Unmodified _FAYIWSSV_ 0 0 0 REV__ENST00000281471.10_1_12:31862342-31882100:-|nuORF REV__ENST00000281471.10_1_12:31862342-31882100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7477722167969 2 486.744911 971.475269 0.082188 4.0005E-05 1.6751 0.00081534 1.7573 0.00085534 486.7458817851067 32.161 0.28429 32.032 31.891 32.176 -0.12915 23 10 3 0 0 0 0.35156 1 16730 16730 49.669 7.5744 1 2468700 + 11373 25197 7727 7897 13189 13189 -0.011610025055233564 FAYKDYLSF 9 Unmodified _FAYKDYLSF_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2809448242188 2 577.281857 1152.54916 0.52125 0.00030091 -2.191 -0.0012648 -1.6697 -0.0009639 577.2813825716686 69.779 0.25374 69.81 69.629 69.883 0.030922 17 12 2 0 0 0 0.040683 1 38362 38362 49.554 24.155 1 2548600 11374 3197 7728 7898 13190 13190 -0.021010791338767376 FAYSDSRVGF 10 Unmodified _FAYSDSRVGF_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1;nc|ENSG00000128965|Q9BUX1-2|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7727661132812 2 574.772188 1147.52982 -0.3157 -0.00018146 1.2439 0.00071496 0.9282 0.00053351 574.7728982465367 48.584 0.41895 48.584 48.433 48.852 0 46 19 3 0 0 0 0.25982 1 26762 26762 29.841 15.935 1 8562700 11375 4104 7729 7899 13191 13191 -0.03804035424764152 FAYSDSRVGF 10 Unmodified _FAYSDSRVGF_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1;nc|ENSG00000128965|Q9BUX1-2|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7723999023438 2 574.772188 1147.52982 0.60461 0.00034751 -1.5397 -0.00088501 -0.93514 -0.00053749 574.7721220126004 49.131 0.59638 48.759 48.446 49.043 -0.37172 102 29 5 0 0 0 0.025861 1 26384 26384 70.332 34.288 1 60892000 11376 4104 7729 7899 13192 13192 -0.03804035424764152 FAYSDSRVGF 10 Unmodified _FAYSDSRVGF_ 0 0 0 ENSG00000128965|ENST00000617768|CHAC1;nc|ENSG00000128965|Q9BUX1-2|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 ENSG00000128965|ENST00000617768|CHAC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7724609375 2 574.772188 1147.52982 1.1084 0.00063709 -0.84638 -0.00048647 0.26205 0.00015062 574.7717488327717 55.086 2.0448 49.165 48.626 50.671 -5.9211 253 123 4 0 0 0 0.14688 2 35054 34909;35054 40.239 19.825 1 270170000 11377 4104 7729 7899 13193;13194 13194 -0.03804035424764152 FAYTQLSDF 9 Unmodified _FAYTQLSDF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2562866210938 2 546.25584 1090.49713 0.29628 0.00016185 0.060793 3.3209E-05 0.35708 0.00019506 546.2554013062712 48.687 0.21701 48.643 48.536 48.753 -0.04369 14 10 2 0 0 0 0.49272 1 26303 26303 7.9102 1.187 1 1429900 + 11378 17502 7730 7900 13195 13195 -0.044502425476366625 FCAVKILDKI 10 Unmodified _FCAVKILDKI_ 0 0 0 REV__ENSG00000277161|ENST00000614443|PIGW REV__ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3422241210938 2 575.338652 1148.66275 0.4145 0.00023848 -1.6639 -0.00095733 -1.2494 -0.00071886 575.3376626829072 61.611 0.2966 61.578 61.394 61.691 -0.032787 41 14 4 0 0 0 0.24975 1 33577 33577 41.956 13.469 1 22172000 + 11379 24661 7731 7901 13196 13196 0.09436692707527072 FCCCCCFCCGA 11 Unmodified _FCCCCCFCCGA_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.6429443359375 2 581.642407 1161.27026 NaN NaN NaN NaN NaN NaN NaN 14.718 1 14.723 14.223 15.223 0.0057774 0 0 0 0.9435 1 7309 7309 0 0 1 11380 7067 7732 7902 13197 13197 -0.30392294553234933 FCCCGAAC 8 Unmodified _FCCCGAAC_ 0 0 0 REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1121826171875 2 389.11298 776.211408 NaN NaN NaN NaN NaN NaN NaN 11.078 1 11.078 10.578 11.578 0 0 0 0 0.97444 1 5254 5254 0 0 1 + 11381 27446 7733 7903 13198 13198 -0.18564943469402806 FCCCGAAC 8 Unmodified _FCCCGAAC_ 0 0 0 REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1116027832031 2 389.11298 776.211408 NaN NaN NaN NaN NaN NaN NaN 8.8516 1 8.7601 8.2601 9.2601 -0.09156 0 0 0 0.97444 1 4336 4336 0 0 1 + 11382 27446 7733 7903 13199 13199 -0.18564943469402806 FCCCGAAC 8 Unmodified _FCCCGAAC_ 0 0 0 REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF REV__ENST00000468067.5_1_13:99853753-99890777:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1118774414062 2 389.11298 776.211408 NaN NaN NaN NaN NaN NaN NaN 11.908 1 11.843 11.343 12.343 -0.064889 0 0 0 0.97444 1 5788 5788 0 0 1 + 11383 27446 7733 7903 13200 13200 -0.18564943469402806 FCCCPCCYCCS 11 Unmodified _FCCCPCCYCCS_ 0 0 0 ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.318603515625 2 617.652972 1233.29139 NaN NaN NaN NaN NaN NaN NaN 17.586 1 17.586 17.086 18.086 0 0 0 0 0.9435 1 8677 8677 0 0 1 11384 12034 7734 7904 13201 13201 -0.3159232924435855 FCCPECDT 8 Unmodified _FCCPECDT_ 0 0 0 nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1 nc|ENSG00000165973|Q92832-2|NELL1 nc|ENSG00000165973|Q92832-2|NELL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.1453857421875 2 459.145532 916.27651 -0.41391 -0.00019005 -0.3694 -0.00016961 -0.78331 -0.00035966 459.14537113470107 106.88 0.57373 106.83 106.53 107.11 -0.048103 36 18 3 0 0 0 0.81107 1 59270 59270 0 0 1 627250 11385 7415 7735 7905 13202 13202 -0.18497670462568294 FCDHEEEKLF 10 Unmodified _FCDHEEEKLF_ 0 0 0 REV__ENSG00000178035|ENST00000326739|IMPDH2 REV__ENSG00000178035|ENST00000326739|IMPDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8580322265625 3 432.857023 1295.54924 0.76076 0.0003293 0.72153 0.00031232 1.4823 0.00064162 432.85733723712696 68.637 0.29782 68.663 68.562 68.86 0.025146 30 13 3 0 0 0 0.64628 1 37720 37720 5.0475 0 1 5048400 + 11386 23019 7736 7906 13203 13203 -0.0867144719618409 FCDHRIPGG 9 Unmodified _FCDHRIPGG_ 0 0 0 ENST00000493246.5_2_7:7680343-7681136:+|nuORF ENST00000493246.5_2_7:7680343-7681136:+|nuORF ENST00000493246.5_2_7:7680343-7681136:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2348327636719 2 501.234719 1000.45488 1.1094 0.00055605 -0.78991 -0.00039593 0.31945 0.00016012 501.2335007066538 94.754 0.43493 88.578 88.496 88.931 -6.1757 36 24 2 0 0 0 0.36964 1 62761 62761 13.906 1.3745 1 6801000 11387 14312 7737 7907 13204 13204 -0.045324964369683585 FCEDDACPM 9 Unmodified _FCEDDACPM_ 0 0 0 REV__ENSG00000225968|ENST00000424383|ELFN1 REV__ENSG00000225968|ENST00000424383|ELFN1 MSMS AL20221201_MKP_PDAC_01 4 515.6687622070312 2 515.669371 1029.32419 NaN NaN NaN NaN NaN NaN NaN 108.53 1 102.35 101.85 102.85 -6.1757 0 0 0 0.84564 1 72529 72529 2.0598 1.2661 1 + 11388 24389 7738 7908 13205 13205 -0.18930016262379468 FCEDGPKWMKA 11 Unmodified _FCEDGPKWMKA_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.2962646484375 2 656.296659 1310.57876 1.3973 0.00091702 -2.2008 -0.0014444 -0.8035 -0.00052734 656.2964424813109 105.33 0.048264 99.15 99.125 99.174 -6.1757 22 10 3 0 0 0 0.71341 1 70568 70568 2.9952 1.3426 1 36520000 + 11389 17721 7739 7909 13206 13206 -0.06410206451687372 FCERKEEQL 9 Unmodified _FCERKEEQL_ 0 0 0 REV__CLTC-VMP1|9|fusion REV__CLTC-VMP1|9|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2841186523438 2 591.284605 1180.55466 0.49757 0.00029421 -0.34739 -0.0002054 0.15018 8.8802E-05 591.2841307337465 36.415 1.1872 36.415 35.993 37.18 0 101 58 3 0 0 0 0.094149 2 19380 19265;19380 34.402 10.381 1 5180300 + 11390 16822 7740 7910 13207;13208 13208 -0.02839723613692513 FCFVFLDG 8 Unmodified _FCFVFLDG_ 0 0 0 ENST00000416426.6_2_17:55757114-55757225:+|nuORF ENST00000416426.6_2_17:55757114-55757225:+|nuORF ENST00000416426.6_2_17:55757114-55757225:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 947.4326171875 1 947.433152 946.425876 0.93144 0.00088247 -3.8745 -0.0036708 -2.943 -0.0027883 947.4295050821794 68.847 0.15379 68.872 68.77 68.924 0.025146 9 6 2 0 0 0 0.80044 1 37838 37838 6.3541 0.59368 1 597570 11391 13043 7741 7911 13209 13209 -0.04948033785967709 FCHKRHFH 8 Unmodified _FCHKRHFH_ 0 0 0 REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2725830078125 2 556.27197 1110.52939 NaN NaN NaN NaN NaN NaN NaN 24.744 1 24.743 24.243 25.243 -0.0016766 0 0 0 0.97444 1 12653 12653 2.5775 0 1 + 11392 18794 7742 7912 13210 13210 -0.021456888349348446 FCHWCFGFY 9 Unmodified _FCHWCFGFY_ 0 0 0 REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|264|2|anti-sense REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|264|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8265991210938 3 403.826341 1208.45719 0.27917 0.00011274 -0.5127 -0.00020704 -0.23353 -9.4304E-05 403.82614139120955 23.41 0.55799 20.631 20.457 21.015 -2.7784 79 34 3 0 0 0 0.60285 1 12718 12718 1.1933 0 1 4121600 + 11393 29435 7743 7913 13211 13211 -0.13869784023540888 FCKCHCTPCC 10 Unmodified _FCKCHCTPCC_ 0 0 0 REV__ENST00000371191.5_1_1:61330944-61331010:+|nuORF REV__ENST00000371191.5_1_1:61330944-61331010:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.6969604492188 2 572.696886 1143.37922 NaN NaN NaN NaN NaN NaN NaN 2.1394 1 2.1223 1.6223 2.6223 -0.017019 0 0 0 1.0061 1 1093 1093 0 0 1 + 11394 26075 7744 7914 13212 13212 -0.18673624267080413 FCKLVKQRVCS 11 Unmodified _FCKLVKQRVCS_ 0 0 0 REV__ENSG00000117408|ENST00000372343|IPO13 REV__ENSG00000117408|ENST00000372343|IPO13 MSMS AL20221201_MKP_PDAC_01 4 437.5743103027344 3 437.573904 1309.69988 NaN NaN NaN NaN NaN NaN NaN 18.606 1 15.984 15.484 16.484 -2.6215 0 0 0 0.93954 1 9811 9811 2.8433 0 1 + 11395 19102 7745 7915 13213 13213 0.05742040981658647 FCLSPELLHI 10 Unmodified _FCLSPELLHI_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2127380371094 3 391.210849 1170.61072 NaN NaN NaN NaN NaN NaN NaN 19.43 1 19.459 18.959 19.959 0.028357 0 0 0 0.99091 1 9795 9795 0.69767 0.24315 1 11396 4182 7746 7916 13214 13214 0.03223529293768479 FCQCSKQRIIY 11 Unmodified _FCQCSKQRIIY_ 0 0 0 REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.8996887207031 3 463.565297 1387.67406 -0.085355 -3.9568E-05 0.48689 0.00022571 0.40154 0.00018614 463.5654766194707 53.984 0.21545 53.917 53.786 54.001 -0.066936 23 10 3 0 0 0 0.72981 1 29312 29312 1.4551 0.24029 1 2235700 + 11397 27658 7747 7917 13215 13215 -0.004268532606147346 FCQCVCHEF 9 Unmodified _FCQCVCHEF_ 0 0 0 ENSG00000180537|ENST00000488300|RNF182 ENSG00000180537|ENST00000488300|RNF182 ENSG00000180537|ENST00000488300|RNF182 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.9308471679688 2 558.208998 1114.40344 NaN NaN NaN NaN NaN NaN NaN 53.955 1 53.955 53.455 54.455 0 0 0 0 0.84564 1 29932 29932 2.0598 0.21551 1 11398 8910 7748 7918 13216 13216 -0.14918324517566361 FCQHPLHPR 9 Unmodified _FCQHPLHPR_ 0 0 0 REV__ENST00000358164.9_1_16:30515497-30516720:+|nuORF REV__ENST00000358164.9_1_16:30515497-30516720:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.718017578125 3 378.859032 1133.55527 -0.0761 -2.8831E-05 -1.632 -0.00061828 -1.7081 -0.00064712 379.19326925863385 30.236 0.11845 30.267 30.182 30.3 0.030106 7 4 2 0 0 0 0.21834 1 15785 15785 0.96228 0 1 269810 + 11399 25870 7749 7919 13217 13217 -0.006168393833377195 FCQYTYYV 8 Unmodified _FCQYTYYV_ 0 0 0 REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.1580200195312 3 362.824883 1085.45282 -0.32202 -0.00011684 3.131 0.001136 2.809 0.0010192 362.82612552829676 22.847 0.14144 22.847 22.734 22.876 0 10 7 2 0 0 0 0.80975 1 11582 11582 0.45834 0.18932 1 485310 + 11400 19203 7750 7920 13218 13218 -0.08648969965474862 FCRTCQKSY 9 Unmodified _FCRTCQKSY_ 0 0 0 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1726379394531 3 379.172288 1134.49503 0.26667 0.00010111 0.064967 2.4634E-05 0.33164 0.00012575 379.1725569036955 59.539 0.24822 59.539 59.423 59.671 0 17 10 2 0 0 0 0.58865 1 33235 33235 1.0715 0 1 1313300 11401 9033 7751 7921 13219 13219 -0.06683317828719737 FCRYANHDN 9 Unmodified _FCRYANHDN_ 0 0 0 REV__nc|ENSG00000086062|P15291-2|B4GALT1 REV__nc|ENSG00000086062|P15291-2|B4GALT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2388305664062 2 570.23799 1138.46143 NaN NaN NaN NaN NaN NaN NaN 20.858 1 20.858 20.358 21.358 0 0 0 0 0.84737 1 10516 10516 1.8442 1.1539 1 + 11402 17764 7752 7922 13220 13220 -0.10226603276259993 FCSYFMDMS 9 Unmodified _FCSYFMDMS_ 0 0 0 REV__ENSG00000123213|ENST00000380985|NLN REV__ENSG00000123213|ENST00000380985|NLN MSMS AL20221201_MKP_PDAC_01 4 565.703857421875 2 565.703214 1129.39187 NaN NaN NaN NaN NaN NaN NaN 106.54 1 100.36 99.862 100.86 -6.1757 0 0 0 0.84564 1 71309 71309 2.0598 0 1 + 11403 19377 7753 7923 13221 13221 -0.16764566331562492 FCTCCMLT 8 Unmodified _FCTCCMLT_ 0 0 0 REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF REV__ENST00000574285.2_1_16:9197349-9197592:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.1691284179688 2 461.170495 920.326438 NaN NaN NaN NaN NaN NaN NaN 64.682 1 64.197 63.697 64.697 -0.48512 0 0 0 0.97444 1 35291 35291 0.79363 0 1 + 11404 29006 7754 7924 13222 13222 -0.13691259058259675 FCVWGALRCL 10 Unmodified _FCVWGALRCL_ 0 0 0 REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2942504882812 2 584.293722 1166.57289 0.28445 0.0001662 -0.33937 -0.00019829 -0.054921 -3.209E-05 584.2937945463362 38.251 1.3139 38.251 37.988 39.302 0 268 74 6 0 0 0 0.54684 1 20541 20541 13.906 13.906 1 7769099999.999999 + 11405 28527 7755 7925 13223 13223 -0.003732601726824214 FCVWGALRCL 10 Unmodified _FCVWGALRCL_ 0 0 0 REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2955322265625 2 584.293722 1166.57289 0.6429 0.00037564 0.18029 0.00010534 0.82318 0.00048098 584.29376248948 43.315 1.5789 38.55 38.197 39.775 -4.7648 415 107 6 0 0 0 0.44373 2 26750 26227;26750 19.257 19.257 1 6745599999.999999 + 11406 28527 7755 7925 13224;13225 13225 -0.003732601726824214 FCWFCHCCF 9 Unmodified _FCWFCHCCF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.1363525390625 3 399.137533 1194.39077 -0.22051 -8.8014E-05 -1.7592 -0.00070217 -1.9797 -0.00079019 399.13693348948766 41.981 0.31656 41.981 41.769 42.086 0 33 16 3 0 0 0 0.61256 1 22645 22645 0.26902 0 1 5004800 + 11407 16783 7756 7926 13226 13226 -0.1986505918146122 FCWFCHCCF 9 Unmodified _FCWFCHCCF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.202392578125 2 598.202661 1194.39077 0.41339 0.00024729 -0.46584 -0.00027867 -0.052448 -3.1375E-05 598.2016123110154 42.432 0.28357 42.432 42.26 42.544 0 20 13 2 0 0 0 0.58466 1 22980 22980 2.3027 0 1 1898600 + 11408 16783 7756 7926 13227 13227 -0.1986505918146122 FCWSTNRLI 9 Unmodified _FCWSTNRLI_ 0 0 0 REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5270690917969 3 380.52706 1138.55935 NaN NaN NaN NaN NaN NaN NaN 28.439 1 28.377 27.877 28.877 -0.062159 0 0 0 0.85737 1 14682 14682 0.26902 0 1 + 11409 18332 7757 7927 13228 13228 -0.0043879468025807 FCYTKVMFRN 10 Unmodified _FCYTKVMFRN_ 0 0 0 ENST00000553657.5_1_14:58758400-58759848:-|nuORF ENST00000553657.5_1_14:58758400-58759848:-|nuORF ENST00000553657.5_1_14:58758400-58759848:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795471191406 3 436.879104 1307.61548 NaN NaN NaN NaN NaN NaN NaN 19.83 1 19.83 19.33 20.33 0 0 0 0 1.0047 1 9945 9945 0.15932 0 1 11410 15194 7758 7928 13229 13229 -0.02601909835107108 FDADYAEKM 9 Unmodified _FDADYAEKM_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3 ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2782592773438 2 545.231507 1088.44846 0.61833 0.00033713 -1.2606 -0.0006873 -0.64224 -0.00035017 545.2307569824599 28.572 0.32204 25.424 25.193 25.515 -3.1482 31 16 3 0 0 0 0.5029 1 15952 15952 7.2892 2.0586 1 8904600 11411 9829;10450 7759 7929 13230 13230 -0.09222479179038601 FDADYAEKM 9 Unmodified _FDADYAEKM_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3 ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 545.231507 1088.44846 -0.28488 -0.00015533 -2.666 -0.0014536 -2.9509 -0.0016089 545.2296313201541 25.157 0.33478 25.157 25.051 25.386 0 -0.13324 -0.0011602 NaN 7.2892 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1860100 11412 9829;10450 7759 7929 -0.09222479179038601 FDALRAAKW 9 Unmodified _FDALRAAKW_ 0 0 0 REV__ENST00000395762.6_1_16:27375151-27375262:+|nuORF REV__ENST00000395762.6_1_16:27375151-27375262:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2942504882812 2 539.295633 1076.57671 0.24632 0.00013284 -0.29375 -0.00015842 -0.047433 -2.5581E-05 539.2953129543948 82.302 0.45728 82.302 82.022 82.48 0 54 20 3 0 0 0 0.5029 1 45743 45743 7.2892 1.0834 1 1792000 + 11413 26484 7760 7930 13231 13231 0.04148868917013715 FDARKLHKL 9 Unmodified _FDARKLHKL_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MSMS AL20221201_MKP_PDAC_01 4 376.5608825683594 3 376.560981 1126.66111 NaN NaN NaN NaN NaN NaN NaN 16.999 1 14.413 13.913 14.913 -2.5866 0 0 0 0.79814 1 8851 8851 6.1918 1.4759 1 11414 8341;6281 7761 7931 13232 13232 0.10284819733783479 FDAVESSVTY 10 Unmodified _FDAVESSVTY_ 0 0 0 REV__ENSG00000168830|ENST00000305344|HTR1E REV__ENSG00000168830|ENST00000305344|HTR1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2542724609375 2 559.256037 1116.49752 0.78361 0.00043824 -3.023 -0.0016906 -2.2393 -0.0012524 559.2543291350695 46.619 0.27425 46.282 46.149 46.424 -0.33664 22 13 2 0 0 0 0.66569 1 24944 24944 6.7232 0.96273 1 3417400 + 11415 22350 7762 7932 13233 13233 -0.056068676184168 FDAWDAFVDL 10 Unmodified _FDAWDAFVDL_ 0 0 0 ENST00000485596.5_1_15:85634092-85681131:+|nuORF;nc|ENSG00000073417|O60658-6|PDE8A;nc|ENSG00000073417|O60658-2|PDE8A;ENSG00000073417|ENST00000394553|PDE8A ENST00000485596.5_1_15:85634092-85681131:+|nuORF ENST00000485596.5_1_15:85634092-85681131:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.18505859375 3 400.185356 1197.53424 NaN NaN NaN NaN NaN NaN NaN 23.395 1 20.616 20.116 21.116 -2.7784 0 0 0 0.97302 1 12662 12662 1.7423 0.14999 1 11416 1105 7763 7933 13234 13234 -0.05662571001857941 FDCQEHDIET 10 Unmodified _FDCQEHDIET_ 0 0 0 nc|ENSG00000101079|Q9UGV2-3|NDRG3;ENSG00000101079|ENST00000349004|NDRG3 nc|ENSG00000101079|Q9UGV2-3|NDRG3 nc|ENSG00000101079|Q9UGV2-3|NDRG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8350219726562 3 412.832766 1235.47647 NaN NaN NaN NaN NaN NaN NaN 91.88 1 91.399 90.899 91.899 -0.48092 0 0 0 0.97855 1 50224 50224 1.4551 0.44154 1 11417 1909 7764 7934 13235 13235 -0.13185200989596524 FDCVDPLASL 10 Unmodified _FDCVDPLASL_ 0 0 0 nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2;nc|ENSG00000112499|O15244-3|SLC22A2 nc|ENSG00000112499|O15244-2|SLC22A2 nc|ENSG00000112499|O15244-2|SLC22A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2550048828125 2 540.257525 1078.5005 0.42049 0.00022717 -4.321 -0.0023345 -3.9005 -0.0021073 540.2553251113751 36.13 0.19724 36.13 36.01 36.207 0 16 9 3 0 0 0 0.24625 1 19190 19190 30.637 4.3684 1 3157700 11418 2895 7765 7935 13236 13236 -0.03561315765273321 FDDAPGLEHAF 11 Unmodified _FDDAPGLEHAF_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.7757568359375 2 609.774928 1217.5353 0.84879 0.00051757 1.7268 0.001053 2.5756 0.0015705 609.7759286997685 63.566 0.47729 57.391 57.156 57.634 -6.1757 52 26 3 0 0 0 0.16973 1 41167 41167 34.402 3.1334 1 24186000 11419 358 7766 7936 13237 13237 -0.06476356632970237 FDDDHAGIFTF 11 Unmodified _FDDDHAGIFTF_ 0 0 0 nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 nc|ENSG00000183023|P32418-2|SLC8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.78271484375 2 642.78021 1283.54587 NaN NaN NaN NaN NaN NaN NaN 79.891 1 79.891 79.391 80.391 0 0 0 0 0.93893 1 44367 44367 3.2813 0.54611 1 11420 9109 7767 7937 13238 13238 -0.08456373978538068 FDDEAPEELTF 11 Unmodified _FDDEAPEELTF_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7;nc|ENSG00000225921|Q9UMY1-2|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.7831420898438 2 656.782615 1311.55068 1.4946 0.0009816 -0.42343 -0.0002781 1.0711 0.0007035 657.283915726849 100.83 0.10606 94.658 94.611 94.717 -6.1757 14 6 3 0 0 0 0.073964 1 67551 67551 45.7 11.298 1 23392000 11421 10586 7768 7938 13239 13239 -0.09263534626438741 FDDEPDSFPF 10 Unmodified _FDDEPDSFPF_ 0 0 0 REV__ENSG00000188177|ENST00000409871|ZC3H6 REV__ENSG00000188177|ENST00000409871|ZC3H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2453002929688 2 608.245669 1214.47678 0.03567 2.1696E-05 1.3859 0.00084294 1.4215 0.00086464 608.246427257827 63.457 0.31779 63.457 63.295 63.612 0 51 17 4 0 0 0 0.24625 2 35369 35358;35369 30.637 10.994 1 3929900 + 11422 23696 7769 7939 13240;13241 13241 -0.12187457998106765 FDDEPDSFPF 10 Unmodified _FDDEPDSFPF_ 0 0 0 REV__ENSG00000188177|ENST00000409871|ZC3H6 REV__ENSG00000188177|ENST00000409871|ZC3H6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7474975585938 2 608.245669 1214.47678 0.03567 2.1696E-05 1.3859 0.00084294 1.4215 0.00086464 608.246427257827 63.457 0.31779 63.457 63.295 63.612 0 51 17 4 0 0 0 0.21571 1 35358 35358 25.399 11.493 1 3929900 + 11423 23696 7769 7939 13242 13242 -0.12187457998106765 FDDGDCCD 8 Unmodified _FDDGDCCD_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 445.1196899414062 2 445.120568 888.226583 NaN NaN NaN NaN NaN NaN NaN 104.8 1 104.75 104.25 105.25 -0.048737 0 0 0 0.97444 1 58186 58186 0 0 1 11424 3202 7770 7940 13243 13243 -0.2220008186685618 FDDGDCCD 8 Unmodified _FDDGDCCD_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MSMS AL20221201_MKP_PDAC_01 4 444.9046325683594 2 445.120568 888.226583 NaN NaN NaN NaN NaN NaN NaN 88.734 1 82.559 82.059 83.059 -6.1757 0 0 0 0.97444 1 58550 58550 0.79363 0 1 11425 3202 7770 7940 13244 13244 -0.2220008186685618 FDDGDCCD 8 Unmodified _FDDGDCCD_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MSMS AL20221201_MKP_PDAC_01 4 445.1199645996094 2 445.120568 888.226583 NaN NaN NaN NaN NaN NaN NaN 93.751 1 87.576 87.076 88.076 -6.1757 0 0 0 0.97444 1 62074 62074 0 0 1 11426 3202 7770 7940 13245 13245 -0.2220008186685618 FDDNFTFNK 9 Unmodified _FDDNFTFNK_ 0 0 0 REV__nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A REV__nc|ENSG00000158528|Q9ULJ8-2|PPP1R9A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.7798461914062 2 574.256371 1146.49819 0.62239 0.00035741 -0.82963 -0.00047642 -0.20724 -0.00011901 574.2562027502133 65.845 0.45455 59.669 59.51 59.965 -6.1757 43 26 2 0 0 0 0.20554 1 42734 42734 9.3831 1.473 1 23270000 + 11427 29728 7771 7941 13246 13246 -0.06920028178728899 FDDSTVLR 8 Unmodified _FDDSTVLR_ 0 0 0 REV__ENST00000507963.5_1_5:92916493-92916754:-|nuORF REV__ENST00000507963.5_1_5:92916493-92916754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7397155761719 2 476.740357 951.46616 0.30798 0.00014683 -1.1026 -0.00052564 -0.7946 -0.00037882 476.73963312171446 61.452 0.36261 61.452 61.235 61.597 0 27 16 3 0 0 0 0.40602 1 34252 34252 43.858 7.7313 1 1000600 + 11428 28109 7772 7942 13247 13247 -0.011513958618706965 FDDTPGPPG 9 Unmodified _FDDTPGPPG_ 0 0 0 REV__ENSG00000181790|ENST00000517894|ADGRB1 REV__ENSG00000181790|ENST00000517894|ADGRB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.6973266601562 2 451.698158 901.381762 NaN NaN NaN NaN NaN NaN NaN 52.603 1 52.603 52.103 53.103 0 0 0 0 0.43505 1 29116 29116 18.135 1.1927 1 + 11429 23223 7773 7943 13248 13248 -0.07287346678617723 FDDYHRFIE 9 Unmodified _FDDYHRFIE_ 0 0 0 REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.7647705078125 2 621.28292 1240.55129 0.41924 0.00026047 2.7495 0.0017082 3.1687 0.0019687 621.285035801189 61.273 0.21849 61.273 61.171 61.389 0 18 9 3 0 0 0 0.20554 1 34144 34144 9.3831 0 1 543070 + 11430 24031 7774 7944 13249 13249 -0.05936650396074583 FDEEFRILF 9 Unmodified _FDEEFRILF_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3072509765625 2 608.305864 1214.59717 0.42894 0.00026093 -0.22262 -0.00013542 0.20632 0.00012551 608.3056325182056 92.9 0.91484 92.443 92.109 93.023 -0.4574 140 44 4 0 0 0 0.6149 1 51051 51051 0.45834 0.057624 1 9893600 11431 8934 7775 7945 13250 13250 -0.0015400521381252474 FDEEKLLTL 9 Unmodified _FDEEKLLTL_ 0 0 0 REV__ENST00000557366.5_1_14:68270819-68282710:-|nuORF REV__ENST00000557366.5_1_14:68270819-68282710:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3024291992188 2 554.300247 1106.58594 1.222 0.00067736 0.31321 0.00017361 1.5352 0.00085097 554.3003560571811 88.333 0.68074 82.157 81.889 82.569 -6.1757 50 37 2 0 0 0 0.024882 1 58399 58399 58.679 3.9053 1 18439000 + 11432 17508 7776 7946 13251 13251 0.036911726920379806 FDEMTCQHCP 10 Unmodified _FDEMTCQHCP_ 0 0 0 nc|ENSG00000196277|Q14831-5|GRM7;nc|ENSG00000196277|Q14831-3|GRM7;nc|ENSG00000196277|Q14831-4|GRM7;ENSG00000196277|ENST00000357716|GRM7;nc|ENSG00000196277|Q14831-2|GRM7 nc|ENSG00000196277|Q14831-5|GRM7 nc|ENSG00000196277|Q14831-5|GRM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1494445800781 3 404.149043 1209.4253 NaN NaN NaN NaN NaN NaN NaN 7.8992 1 7.8077 7.3077 8.3077 -0.09156 0 0 0 1.0024 1 3880 3880 0.13989 0 1 11433 9793 7777 7947 13252 13252 -0.17103564559647566 FDENIYTF 8 Unmodified _FDENIYTF_ 0 0 0 REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF REV__ENST00000489526.1_1_10:102762295-102762823:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1047.931518554688 1 1048.4622 1047.45493 -0.23365 -0.00024497 -0.0001072 -1.124E-07 -0.23376 -0.00024509 1048.4622363405754 66.57 0.21655 66.57 66.421 66.637 0 12 9 2 0 0 0 8.7369 1 37111 37111 1.8442 1.0506 1 722080 + 11434 18577 7778 7948 13253 13253 -0.06690217955997468 FDEQNLELI 9 Unmodified _FDEQNLELI_ 0 0 0 REV__ENST00000568164.1_1_16:75148422-75149226:-|nuORF REV__ENST00000568164.1_1_16:75148422-75149226:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7807006835938 2 560.779679 1119.5448 0.62511 0.00035055 0.77461 0.00043439 1.3997 0.00078493 560.7800479724536 74.291 0.3475 74.291 74.15 74.497 0 26 15 3 0 0 0 0.51218 1 41329 41329 6.7232 2.3939 1 891830 + 11435 22152 7779 7949 13254 13254 -0.010185883474150614 FDEVRCFV 8 Unmodified _FDEVRCFV_ 0 0 0 REV__ENSG00000004838|ENST00000231749|ZMYND10 REV__ENSG00000004838|ENST00000231749|ZMYND10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2347412109375 2 507.739302 1013.46405 -0.2669 -0.00013552 -3.6203 -0.0018381 -3.8872 -0.0019737 507.7374345487556 26.882 0.1689 26.882 26.803 26.972 0 13 7 2 0 0 0 8.7369 1 13834 13834 8.5933 0.68312 1 1383900 + 11436 16952 7780 7950 13255 13255 -0.042141478713119795 FDFCNFSSRFY 11 Unmodified _FDFCNFSSRFY_ 0 0 0 REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.203857421875 3 478.204534 1431.59177 -0.28 -0.0001339 -1.4862 -0.00071072 -1.7662 -0.00084462 478.2043793957186 19.71 0.31428 19.71 19.574 19.888 0 205 41 7 0 0 0 0.71938 1 9915 9915 2.4348 1.1051 1 33390000 + 11437 20950 7781 7951 13256 13256 -0.10676052067947239 FDFDETIVDE 10 Unmodified _FDFDETIVDE_ 0 0 0 ENSG00000173868|ENST00000310544|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-2|PHOSPHO1;nc|ENSG00000173868|Q8TCT1-3|PHOSPHO1 ENSG00000173868|ENST00000310544|PHOSPHO1 ENSG00000173868|ENST00000310544|PHOSPHO1 MSMS AL20221201_MKP_PDAC_01 4 410.5138549804688 3 410.511798 1228.51356 NaN NaN NaN NaN NaN NaN NaN 16.595 1 14.038 13.538 14.538 -2.557 0 0 0 0.99091 1 8609 8609 0.69767 0.24315 1 11438 8371 7782 7952 13257 13257 -0.09155206172158614 FDFDSDEDF 9 Unmodified _FDFDSDEDF_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.78369140625 2 568.706377 1135.3982 0.84674 0.00048154 -3.1347 -0.0017827 -2.2879 -0.0013012 568.7049382653911 42.495 0.24308 42.495 42.382 42.625 0 21 11 3 0 0 0 0.20727 1 22945 22945 4.3292 2.485 1 4706600 11439 3800 7783 7953 13258 13258 -0.1640831030319987 FDFEPACTYIL 11 Unmodified _FDFEPACTYIL_ 0 0 0 REV__ENSG00000177990|ENST00000324472|DPY19L2 REV__ENSG00000177990|ENST00000324472|DPY19L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8052978515625 2 659.804839 1317.59513 -0.02383 -1.5723E-05 0.91665 0.00060481 0.89282 0.00058909 659.8053012851265 99.325 0.11908 99.325 99.266 99.385 0 12 4 3 0 0 0 0.65108 1 54839 54839 8.7454 1.1365 1 3324000 + 11440 23013 7784 7954 13259 13259 -0.050968020139180226 FDFLKHRF 8 Unmodified _FDFLKHRF_ 0 0 0 nc|ENSG00000067191|Q02641-2|CACNB1;nc|ENSG00000067191|Q02641-3|CACNB1;ENSG00000067191|ENST00000394303|CACNB1;ENST00000550483.5_1_12:49218969-49220098:+|nuORF;nc|ENSG00000165995|Q08289-5|CACNB2;nc|ENSG00000165995|Q08289-9|CACNB2;nc|ENSG00000165995|Q08289-2|CACNB2;nc|ENSG00000165995|Q08289-6|CACNB2;nc|ENSG00000283228|O00305-3|CACNB4;ENSG00000182389|ENST00000539935|CACNB4;ENST00000552480.1_1_12:49218912-49220219:+|nuORF;nc|ENSG00000283228|O00305-2|CACNB4;nc|ENSG00000283228|O00305-4|CACNB4;nc|ENSG00000167535|P54284-5|CACNB3;ENST00000548860.5_1_12:49218876-49221679:+|nuORF;nc|ENSG00000165995|Q08289-4|CACNB2;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2;nc|ENSG00000167535|P54284-2|CACNB3;nc|ENSG00000167535|P54284-3|CACNB3;nc|ENSG00000167535|P54284-4|CACNB3;ENSG00000167535|ENST00000301050|CACNB3 nc|ENSG00000067191|Q02641-2|CACNB1;nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000167535|P54284-2|CACNB3 nc|ENSG00000067191|Q02641-2|CACNB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2015075683594 3 370.534543 1108.5818 -0.45739 -0.00016948 2.333 0.00086445 1.8756 0.00069497 370.5355191084064 25.429 0.20461 25.429 25.366 25.57 0 14 9 3 0 0 0 8.7369 1 13034 13034 6.7232 3.7279 1 1118700 11441 953;7417;7626 7785 7955 13260 13260 0.031851727796492924 FDFSKLLKGVI 11 Unmodified _FDFSKLLKGVI_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8768310546875 2 633.876456 1265.73836 NaN NaN NaN NaN NaN NaN NaN 101.15 1 101.02 100.52 101.52 -0.13293 0 0 0 0.94337 1 55206 55206 0 0 1 11442 5401 7786 7956 13261 13261 0.11611993159476697 FDGIATGYL 9 Unmodified _FDGIATGYL_ 0 0 0 nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B nc|ENSG00000088305|Q9UBC3-5|DNMT3B nc|ENSG00000088305|Q9UBC3-5|DNMT3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.7640686035156 2 478.739825 955.465098 0.70506 0.00033754 1.7732 0.00084888 2.4782 0.0011864 478.7403486500508 68.173 0.32996 61.997 61.784 62.114 -6.1757 24 18 2 0 0 0 0.18118 1 44384 44384 12.532 0 1 17188000 11443 16065 7787 7957 13262 13262 -0.01441610230756396 FDGLGGSWS 9 Unmodified _FDGLGGSWS_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2066650390625 2 463.20615 924.397747 0.85197 0.00039464 -0.85294 -0.00039509 -0.00097517 -4.517E-07 463.205778119392 74.469 0.31065 74.469 74.294 74.604 0 24 13 2 0 0 0 0.23158 1 41442 41442 20.454 5.8719 1 1553200 + 11444 22789 7788 7958 13263 13263 -0.067476404417107 FDGLGGSWS 9 Unmodified _FDGLGGSWS_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2062072753906 2 463.20615 924.397747 0.39807 0.00018439 1.1296 0.00052321 1.5276 0.0007076 463.2068729978543 82.303 0.48932 76.128 75.883 76.372 -6.1757 44 26 2 0 0 0 0.16226 1 54005 54005 26.884 26.884 1 12626000 + 11445 22789 7788 7958 13264 13264 -0.067476404417107 FDGLGGSWS 9 Unmodified _FDGLGGSWS_ 0 0 0 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 REV__nc|ENSG00000174371|Q9UQ84-4|EXO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 463.20615 924.397747 0.58792 0.00027233 -0.53951 -0.00024991 0.048404 2.2421E-05 463.2059228168241 74.969 0.39495 74.492 74.301 74.696 -0.47714 0.011401 0.00013366 NaN 20.454 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2616300 + 11446 22789 7788 7958 -0.067476404417107 FDGSCAFP 8 Unmodified _FDGSCAFP_ 0 0 0 ENST00000035307.6_1_7:150930587-150930716:+|nuORF ENST00000035307.6_1_7:150930587-150930716:+|nuORF ENST00000035307.6_1_7:150930587-150930716:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 843.3326416015625 1 843.334166 842.32689 -0.062666 -5.2848E-05 -0.14906 -0.00012571 -0.21173 -0.00017855 843.3343273395825 90.417 0.3158 89.922 89.758 90.074 -0.49457 23 14 2 0 0 0 0.80143 1 49503 49503 5.7604 5.7604 1 1017200 11447 10970 7789 7959 13265 13265 -0.10058056750892774 FDHAAHGW 8 Unmodified _FDHAAHGW_ 0 0 0 REV__ENST00000485767.1_1_9:124074589-124074895:+|nuORF REV__ENST00000485767.1_1_9:124074589-124074895:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7072448730469 2 470.706651 939.39875 NaN NaN NaN NaN NaN NaN NaN 60.325 1 59.835 59.335 60.335 -0.49079 0 0 0 0.93066 1 32847 32847 14.582 3.7578 1 + 11448 27784 7790 7960 13266 13266 -0.0733738128215009 FDHAVSKF 8 Unmodified _FDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.24169921875 2 475.74016 949.465767 -0.10797 -5.1364E-05 -0.8218 -0.00039096 -0.92976 -0.00044233 475.73980506110723 41.394 0.14574 41.392 41.298 41.444 -0.0017929 11 6 2 0 0 0 0.077427 1 22124 22124 118.07 73.661 1 4315800 11449 977 7791 7961 13267 13267 -0.010987707910544486 FDHAVSKF 8 Unmodified _FDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 475.74016 949.465767 -0.23949 -0.00011393 0.1233 5.8657E-05 -0.11619 -5.5277E-05 475.7403273287661 41.709 0.099796 41.403 41.333 41.433 -0.30682 0.005204 0.00067424 NaN 118.07 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2147900 11450 977 7791 7961 -0.010987707910544486 FDHPNVVHL 9 Unmodified _FDHPNVVHL_ 0 0 0 nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7 nc|ENSG00000135333|Q15375-2|EPHA7 nc|ENSG00000135333|Q15375-2|EPHA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8544616699219 3 359.854053 1076.54033 1.1019 0.00039651 3.1643 0.0011387 4.2661 0.0015352 359.8547315740845 27.69 0.25423 24.653 24.496 24.75 -3.0365 18 12 2 0 0 0 0.45045 1 15379 15379 6.6304 1.3335 1 10099000 11451 4690 7792 7962 13268 13268 0.005119920203242145 FDIASADYK 9 Unmodified _FDIASADYK_ 0 0 0 REV__ENST00000490203.5_1_1:201979803-201981353:+|nuORF REV__ENST00000490203.5_1_1:201979803-201981353:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1029.724853515625 1 1029.48875 1028.48148 0.0079489 8.1833E-06 -0.45605 -0.00046949 -0.4481 -0.00046131 1029.4886342800478 49.374 0.27472 49.374 49.236 49.51 0 18 12 2 0 0 0 0.21819 1 27105 27105 2.0598 0.21551 1 1787000 + 11452 16920 7793 7963 13269 13269 -0.03162529064661612 FDIPQIAY 8 Unmodified _FDIPQIAY_ 0 0 0 nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1;ENSG00000152822|ENST00000282753|GRM1;ENST00000507005.1_1_6:146350692-146480734:+|nuORF nc|ENSG00000152822|Q13255-2|GRM1 nc|ENSG00000152822|Q13255-2|GRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7501220703125 2 483.750193 965.485833 NaN NaN NaN NaN NaN NaN NaN 78.316 1 77.83 77.33 78.33 -0.48596 0 0 0 0.97444 1 42893 42893 0.69038 0 1 11453 6217 7794 7964 13270 13270 0.0017098014888006219 FDIRYQEL 8 Unmodified _FDIRYQEL_ 0 0 0 REV__ENSG00000109436|ENST00000442267|TBC1D9 REV__ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2787475585938 2 542.277106 1082.53966 1.0351 0.00056132 0.38783 0.00021031 1.4229 0.00077163 542.2777069279751 63.677 1.4321 57.501 56.964 58.396 -6.1757 222 79 6 0 0 0 0.71527 1 40933 40933 15.847 1.9411 1 87514000 + 11454 18656 7795 7965 13271 13271 0.0016915258061089844 FDISFSGTPR 10 Unmodified _FDISFSGTPR_ 0 0 0 REV__ENSG00000099219|ENST00000339450|ERMP1 REV__ENSG00000099219|ENST00000339450|ERMP1 MSMS AL20221201_MKP_PDAC_01 4 376.1899719238281 3 376.189101 1125.54547 NaN NaN NaN NaN NaN NaN NaN 17.141 1 14.554 14.054 15.054 -2.5866 0 0 0 0.75165 1 8937 8937 9.2438 2.6134 1 + 11455 17968 7796 7966 13272 13272 -0.012277489077177961 FDISKKEM 8 Oxidation (M) _FDISKKEM(Oxidation (M))_ FDISKKEM(1) FDISKKEM(50) 0 0 1 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2523498535156 2 507.252243 1012.48993 0.15454 7.839E-05 0.61882 0.0003139 0.77336 0.00039229 507.2526030441894 24.162 0.21496 21.335 21.159 21.374 -2.8273 18 11 2 0 0 0 0.34916 1 13126 13126 49.933 6.0747 1 2398500 11456 4588 7797 7967 13273 13273 833 -0.01581298419682753 FDISQFGSEPE 11 Unmodified _FDISQFGSEPE_ 0 0 0 REV__ENST00000561234.5_2_15:40758783-40758927:+|nuORF REV__ENST00000561234.5_2_15:40758783-40758927:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.1886291503906 3 419.187426 1254.54045 0.64171 0.000269 0.86178 0.00036125 1.5035 0.00063025 419.1878690506954 72.76 0.21766 72.284 72.146 72.363 -0.47588 15 9 2 0 0 0 0.71341 1 39829 39829 1.2148 0 1 914960 + 11457 28836 7798 7968 13274 13274 -0.0766409756097346 FDKDYGVLLT 10 Unmodified _FDKDYGVLLT_ 0 0 0 REV__ENSG00000123066|ENST00000281928|MED13L REV__ENSG00000123066|ENST00000281928|MED13L MSMS AL20221201_MKP_PDAC_01 4 390.8741760253906 3 390.87289 1169.59684 NaN NaN NaN NaN NaN NaN NaN 15.528 1 13 12.5 13.5 -2.5273 0 0 0 0.88176 1 7974 7974 5.0475 0 1 + 11458 19367 7799 7969 13275 13275 0.01882575066338177 FDKGCVNCKY 10 Unmodified _FDKGCVNCKY_ 0 0 0 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7645874023438 2 588.762452 1175.51035 NaN NaN NaN NaN NaN NaN NaN 94.816 1 94.396 93.896 94.896 -0.42044 0 0 0 0.97302 1 51796 51796 3.5965 1.5367 1 + 11459 24612 7800 7970 13276 13276 -0.07038451031530712 FDKIFNQKIGF 11 Unmodified _FDKIFNQKIGF_ 0 0 0 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.9137573242188 3 452.915201 1355.72377 NaN NaN NaN NaN NaN NaN NaN 30.554 1 30.584 30.084 31.084 0.030106 0 0 0 0.94037 1 15977 15977 2.2527 1.5551 1 11460 1749 7801 7971 13277 13277 0.06013921011299317 FDKIVRHF 8 Unmodified _FDKIVRHF_ 0 0 0 REV__ENST00000561048.1_1_15:64452264-64455191:-|nuORF REV__ENST00000561048.1_1_15:64452264-64455191:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2978515625 2 531.298176 1060.5818 0.34923 0.00018555 -0.25617 -0.0001361 0.093068 4.9447E-05 531.298165867703 85.663 0.25972 85.663 85.508 85.768 0 17 10 2 0 0 0 0.80383 1 47435 47435 4.3292 0 1 452010 + 11461 22149 7802 7972 13278 13278 0.05393172779645283 FDKLTCSEVIR 11 Unmodified _FDKLTCSEVIR_ 0 0 0 REV__ENSG00000047936|ENST00000368507|ROS1 REV__ENSG00000047936|ENST00000368507|ROS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5642700195312 3 437.56395 1309.67002 0.30932 0.00013535 -0.1278 -5.5923E-05 0.18152 7.9426E-05 437.56400074760137 80.186 0.80836 80.244 80.004 80.812 0.057587 120 37 4 0 0 0 0.62014 1 44460 44460 10.315 0 1 91557000 + 11462 17236 7803 7973 13279 13279 0.02757380517277852 FDKPIYTKF 9 Unmodified _FDKPIYTKF_ 0 0 0 REV__ENSG00000101493|ENST00000443185|ZNF516 REV__ENSG00000101493|ENST00000443185|ZNF516 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8131713867188 2 579.813325 1157.6121 1.5855 0.00091932 -0.16556 -9.5993E-05 1.42 0.00082332 579.8132229924736 70.953 0.29153 70.988 70.835 71.127 0.035515 24 13 2 0 0 0 0.076472 1 39053 39053 49.933 19.296 1 6475300 + 11463 18180 7804 7974 13280 13280 0.039594866541847296 FDKYPHLRK 9 Unmodified _FDKYPHLRK_ 0 0 0 REV__ENSG00000014257|ENST00000336375|ACP3 REV__ENSG00000014257|ENST00000336375|ACP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3051147460938 2 602.33529 1202.65603 0.58616 0.00035306 3.5287 0.0021254 4.1148 0.0024785 602.3362269340463 95.331 0.22581 89.155 89.056 89.282 -6.1757 16 12 2 0 0 0 0.41742 1 63133 63133 11.64 1.5664 1 6812400 + 11464 17081 7805 7975 13281 13281 0.06280515871162606 FDLAYRKF 8 Unmodified _FDLAYRKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-3|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2847900390625 2 530.284734 1058.55492 0.60722 0.000322 0.25147 0.00013335 0.85869 0.00045535 530.2847792792603 49.37 0.38348 49.326 49.093 49.476 -0.04369 29 18 2 0 0 0 0.14054 1 26672 26672 88.904 26.331 1 9029400 11465 5603 7806 7976 13282 13282 0.027980641684507646 FDLCCFHLPE 10 Unmodified _FDLCCFHLPE_ 0 0 0 REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158 REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2637329101562 2 612.264827 1222.5151 -0.67352 -0.00041237 0.040471 2.4779E-05 -0.63305 -0.00038759 612.2646496733448 32.124 0.34083 32.124 31.92 32.261 0 40 16 3 0 0 0 0.69377 1 16696 16696 3.5965 0 1 1645600 + 11466 24497 7807 7977 13283 13283 -0.08725566888756475 FDLEVMARLD 10 Unmodified _FDLEVMARLD_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.8026733398438 2 604.802631 1207.59071 -0.67071 -0.00040564 -1.357 -0.00082072 -2.0277 -0.0012264 604.8019316819519 25.581 0.39342 25.581 25.406 25.799 0 33 18 2 0 0 0 0.68539 1 13094 13094 4.5289 0.93237 1 974130 + 11467 17565 7808 7978 13284 13284 -0.0047826643683492875 FDLLESVL 8 Unmodified _FDLLESVL_ 0 0 0 REV__ENSG00000124935|ENST00000244926|SCGB1D2 REV__ENSG00000124935|ENST00000244926|SCGB1D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2575073242188 2 468.257851 934.501149 0.33891 0.0001587 -0.059528 -2.7875E-05 0.27938 0.00013082 468.25786675213715 96.896 0.30136 96.592 96.433 96.734 -0.30472 32 18 2 0 0 0 0.78849 1 52884 52884 9.3474 0 1 952830 + 11468 19474 7809 7979 13285 13285 0.031278469460858105 FDLLESVL 8 Unmodified _FDLLESVL_ 0 0 0 REV__ENSG00000124935|ENST00000244926|SCGB1D2 REV__ENSG00000124935|ENST00000244926|SCGB1D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 468.257851 934.501149 0.33891 0.0001587 -0.059528 -2.7875E-05 0.27938 0.00013082 468.25786675213715 96.896 0.30136 96.592 96.433 96.734 -0.30472 0 0 NaN 9.3474 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 952830 + 11469 19474 7809 7979 0.031278469460858105 FDLLYFSAF 9 Unmodified _FDLLYFSAF_ 0 0 0 REV__ENSG00000144230|ENST00000486700|GPR17 REV__ENSG00000144230|ENST00000486700|GPR17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2976684570312 2 561.778951 1121.54335 0.45407 0.00025509 3.6362 0.0020427 4.0902 0.0022978 561.7808739408481 51.921 0.3263 51.488 51.305 51.631 -0.43367 25 16 2 0 0 0 0.18521 1 28103 28103 16.942 2.104 1 2863000 + 11470 20696 7810 7980 13286 13286 -0.012561776455413565 FDLNNWFDFFY 11 Unmodified _FDLNNWFDFFY_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 764.3338012695312 2 764.33261 1526.65067 NaN NaN NaN NaN NaN NaN NaN 62.902 1 62.902 62.402 63.402 0 0 0 0 0.94184 1 35087 35087 1.1933 0 1 + 11471 22861 7811 7981 13287 13287 -0.09159252501945048 FDLNQKVTII 10 Unmodified _FDLNQKVTII_ 0 0 0 REV__ENSG00000113100|ENST00000231021|CDH9 REV__ENSG00000113100|ENST00000231021|CDH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2615356445312 2 595.842613 1189.67067 0.59384 0.00035383 -1.4247 -0.00084888 -0.83084 -0.00049505 595.8416055177983 63.935 0.23061 63.449 63.341 63.572 -0.48512 32 13 3 0 0 0 0.35903 1 34825 34825 24.021 6.9077 1 3864200 + 11472 18852 7812 7982 13288 13288 0.08342543228650356 FDLQFRLF 8 Unmodified _FDLQFRLF_ 0 0 0 REV__ENSG00000182544|ENST00000329548|MFSD5 REV__ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2936401367188 2 543.292559 1084.57057 0.7963 0.00043262 1.1385 0.00061854 1.9348 0.0010512 543.2932472131899 64.471 0.23012 64.46 64.318 64.548 -0.010529 24 11 3 0 0 0 0.74163 1 35310 35310 13.508 0.97634 1 5116000 + 11473 23276 7813 7983 13289 13289 0.03166350685501129 FDLQMEGFRYY 11 Unmodified _FDLQMEGFRYY_ 0 0 0 REV__ENSG00000163527|ENST00000295770|STT3B REV__ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2254943847656 3 490.223705 1467.64929 0.81898 0.00040148 1.4024 0.00068747 2.2213 0.0010889 490.2243964533965 47.409 0.40589 47.057 46.838 47.244 -0.3526 56 19 4 0 0 0 0.71618 1 25369 25369 2.4348 0.97967 1 24095000 + 11474 21778 7814 7984 13290 13290 -0.06583209862333206 FDLSKLPTL 9 Unmodified _FDLSKLPTL_ 0 0 0 REV__ENSG00000005421|ENST00000222381|PON1 REV__ENSG00000005421|ENST00000222381|PON1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7978515625 2 517.30005 1032.58555 0.35188 0.00018203 -0.64634 -0.00033435 -0.29446 -0.00015232 517.2997005226159 91.661 0.55331 91.18 90.817 91.37 -0.48092 80 33 3 0 0 0 0.54444 1 49941 49941 4.756 0 1 4430200 + 11475 16968 7815 7985 13291 13291 0.07055797762859584 FDLSSYRDCL 10 Unmodified _FDLSSYRDCL_ 0 0 0 ENSG00000128294|ENST00000338754|TPST2 ENSG00000128294|ENST00000338754|TPST2 ENSG00000128294|ENST00000338754|TPST2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.775146484375 2 609.776613 1217.53867 0.84878 0.00051757 -1.0372 -0.00063245 -0.1884 -0.00011488 609.7759286997685 63.566 0.47729 57.391 57.156 57.634 -6.1757 52 26 3 0 0 0 0.16361 1 41025 41025 38.176 15.439 1 24186000 11476 4059 7816 7986 13292 13292 -0.06139429850600209 FDLTRAINIY 10 Unmodified _FDLTRAINIY_ 0 0 0 REV__ENSG00000070159|ENST00000374541|PTPN3 REV__ENSG00000070159|ENST00000374541|PTPN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.22412109375 3 409.224034 1224.65027 0.94615 0.00038719 -1.1883 -0.00048628 -0.24215 -9.9095E-05 409.2231150169262 34.512 0.43302 30.416 30.25 30.683 -4.0951 43 25 2 0 0 0 0.42143 1 19871 19871 17.863 5.6884 1 15269000 + 11477 17464 7817 7987 13293 13293 0.04693372568840459 FDLTRAINIY 10 Unmodified _FDLTRAINIY_ 0 0 0 REV__ENSG00000070159|ENST00000374541|PTPN3 REV__ENSG00000070159|ENST00000374541|PTPN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.22412109375 3 409.224034 1224.65027 1.2407 0.00050773 -2.7691 -0.0011332 -1.5284 -0.00062547 409.2229242312442 34.238 0.54684 30.253 29.929 30.476 -3.9853 65 30 3 0 0 0 0.22797 1 19871 19871 17.863 5.6884 1 13954000 + 11478 17464 7817 7987 13294 13294 0.04693372568840459 FDNCQTFNE 9 Unmodified _FDNCQTFNE_ 0 0 0 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7335205078125 2 559.216388 1116.41822 4.653 0.002602 0.53599 0.00029973 5.189 0.0029018 559.2167607333713 99.036 0.27258 99.008 98.891 99.164 -0.028282 12 9 2 0 0 0 0.19891 1 55074 55074 11.64 1.5664 1 1301500 11479 1180 7818 7988 13295 13295 -0.1353283784424093 FDNTDFEPYKF 11 Unmodified _FDNTDFEPYKF_ 0 0 0 ENSG00000122012|ENST00000502798|SV2C ENSG00000122012|ENST00000502798|SV2C ENSG00000122012|ENST00000502798|SV2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.8783569335938 3 474.878592 1421.61395 0.054071 2.5677E-05 -0.28214 -0.00013398 -0.22807 -0.00010831 474.8784678507601 48.978 0.27638 48.978 48.828 49.105 0 33 13 4 0 0 0 0.67477 1 26911 26911 6.6235 2.5068 1 10729000 11480 3616 7819 7989 13296 13296 -0.07999549118540017 FDNTDFEPYKF 11 Unmodified _FDNTDFEPYKF_ 0 0 0 ENSG00000122012|ENST00000502798|SV2C ENSG00000122012|ENST00000502798|SV2C ENSG00000122012|ENST00000502798|SV2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.878662109375 3 474.878592 1421.61395 0.6977 0.00033132 -0.24635 -0.00011698 0.45135 0.00021434 474.8783980902829 49.352 0.18355 48.974 48.833 49.017 -0.37868 14 8 2 0 0 0 0.72981 1 26522 26522 1.4551 0 1 2493700 11481 3616 7819 7989 13297 13297 -0.07999549118540017 FDNWDESYDYW 11 Unmodified _FDNWDESYDYW_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.1469116210938 4 385.647936 1538.56264 0.5273 0.00020335 -0.0068639 -2.647E-06 0.52043 0.0002007 385.8986199068928 51.087 0.31018 51.087 50.897 51.208 0 45 15 4 0 0 0 0.30604 1 28140 28140 0 0 1 6617500 11482 10206 7820 7990 13298 13298 -0.18509917883216076 FDPANGKF 8 Unmodified _FDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2205200195312 2 448.21906 894.423567 -0.057516 -2.578E-05 0.83559 0.00037453 0.77808 0.00034875 448.21943149625656 38.39 0.28651 38.104 37.93 38.217 -0.28687 29 12 3 0 0 0 0.44629 1 20190 20190 39.957 28.317 1 3803600 11483 7651 7821 7991 13299 13299 -0.027867461994333098 FDPANGKF 8 Unmodified _FDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.21906 894.423567 0.40852 0.00018311 0.60728 0.00027219 1.0158 0.0004553 448.2193072877673 38.025 0.20825 38.042 37.942 38.151 0.01704 -0.030938 -0.00015973 NaN 39.957 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 879190 11484 7651 7821 7991 -0.027867461994333098 FDPKFNGQL 9 Unmodified _FDPKFNGQL_ 0 0 0 REV__nc|ENSG00000140632|Q49A26-5|GLYR1 REV__nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.2323608398438 2 533.271824 1064.5291 1.1775 0.00062795 2.391 0.0012751 3.5685 0.001903 533.2727983510159 58.387 0.3829 52.312 52.109 52.492 -6.0745 42 20 3 0 0 0 0.18521 1 37424 37424 16.942 6.8684 1 26051000 + 11485 20488 7822 7992 13300 13300 -0.0005883007379452465 FDPPTPARA 9 Unmodified _FDPPTPARA_ 0 0 0 ENST00000394419.8_3_14:69376053-69376092:-|nuORF ENST00000394419.8_3_14:69376053-69376092:-|nuORF ENST00000394419.8_3_14:69376053-69376092:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.2538757324219 2 486.250892 970.48723 NaN NaN NaN NaN NaN NaN NaN 51.946 1 46.211 45.711 46.711 -5.7345 0 0 0 0.17247 1 32743 32743 34.102 3.8776 1 11486 12736 7823 7993 13301 13301 0.0008061423765184372 FDPSVVEIF 9 Unmodified _FDPSVVEIF_ 0 0 0 nc|ENSG00000157426|Q4L235-2|AASDH;ENSG00000157426|ENST00000205214|AASDH;nc|ENSG00000157426|Q4L235-3|AASDH;nc|ENSG00000157426|Q4L235-4|AASDH;ENST00000514745.5_1_4:57219701-57248665:-|nuORF;ENST00000503808.5_1_4:57204874-57250274:-|nuORF nc|ENSG00000157426|Q4L235-2|AASDH;ENST00000503808.5_1_4:57204874-57250274:-|nuORF nc|ENSG00000157426|Q4L235-2|AASDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7689819335938 2 526.768583 1051.52261 0.72572 0.00038229 -0.49249 -0.00025943 0.23323 0.00012286 526.7681865992054 99.586 0.29668 93.41 93.261 93.558 -6.1757 41 18 3 0 0 0 0.16226 1 66477 66477 26.884 26.884 1 203230000 11487 6518;14478 7824 7994 13302 13302 -0.0010876802521124773 FDQKRCRVIMR 11 Unmodified _FDQKRCRVIMR_ 0 0 0 REV__ENST00000481365.5_1_22:18080958-18102283:-|nuORF REV__ENST00000481365.5_1_22:18080958-18102283:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 726.3892211914062 2 726.389748 1450.76494 NaN NaN NaN NaN NaN NaN NaN 44.534 1 39.682 39.182 40.182 -4.852 0 0 0 0.88164 1 27199 27199 8.1555 2.8586 1 + 11488 19773 7825 7995 13303 13303 0.05759035507480803 FDQMIVDKL 9 Unmodified _FDQMIVDKL_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7905883789062 2 554.788992 1107.56343 0.59138 0.00032809 1.6956 0.00094073 2.287 0.0012688 554.7903492526968 65.21 0.85303 59.034 58.509 59.362 -6.1757 100 47 4 0 0 0 0.026499 2 42259 42259;42391 57.249 9.5268 1 67134000 + 11489 22919 7826 7996 13304;13305 13304 0.013952500227787823 FDQMTIEDLN 10 Unmodified _FDQMTIEDLN_ 0 0 0 ENST00000580649.1_1_17:73035029-73035402:-|nuORF;nc|ENSG00000167863|O75947-2|ATP5PD;ENSG00000167863|ENST00000301587|ATP5PD ENST00000580649.1_1_17:73035029-73035402:-|nuORF ENST00000580649.1_1_17:73035029-73035402:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.18603515625 3 409.185028 1224.53325 NaN NaN NaN NaN NaN NaN NaN 79.238 1 73.062 72.562 73.562 -6.1757 0 0 0 0.94014 1 51915 51915 3.3196 0 1 11490 7677 7827 7997 13306 13306 -0.07003153433061016 FDQRIIDGY 9 Unmodified _FDQRIIDGY_ 0 0 0 REV__ENSG00000169255|ENST00000320474|B3GALNT1 REV__ENSG00000169255|ENST00000320474|B3GALNT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7822265625 2 563.780013 1125.54547 NaN NaN NaN NaN NaN NaN NaN 19.365 1 19.365 18.865 19.865 0 0 0 0 0.84369 1 9679 9679 2.3027 0.24298 1 + 11491 22390 7828 7998 13307 13307 -0.012277489077177961 FDQWHLLS 8 Unmodified _FDQWHLLS_ 0 0 0 ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10;ENST00000574478.1_1_17:18651366-18682393:+|nuORF;nc|ENSG00000241322|O95170-2|FBXW10B ENSG00000241322|ENST00000395906|FBXW10B ENSG00000241322|ENST00000395906|FBXW10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2603759765625 2 523.258717 1044.50288 NaN NaN NaN NaN NaN NaN NaN 14.998 1 14.998 14.498 15.498 0 0 0 0 0.97444 1 7185 7185 2.0598 0.21551 1 11492 8160 7829 7999 13308 13308 -0.01759099245282414 FDRLYRHL 8 Unmodified _FDRLYRHL_ 0 0 0 REV__ENSG00000108784|ENST00000225927|NAGLU REV__ENSG00000108784|ENST00000225927|NAGLU MSMS AL20221201_MKP_PDAC_01 4 560.3056030273438 2 560.306532 1118.59851 NaN NaN NaN NaN NaN NaN NaN 102.02 1 95.84 95.34 96.34 -6.1757 0 0 0 0.96881 1 68477 68477 9.3474 4.1168 1 + 11493 18626 7830 8000 13309 13309 0.04395673665612776 FDRPQELKL 9 Unmodified _FDRPQELKL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;ENST00000494124.2_1_9:19316810-19337609:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5492248535156 3 382.548629 1144.62406 0.12522 4.7902E-05 -0.15251 -5.8344E-05 -0.027296 -1.0442E-05 382.548535344899 39.397 0.22594 39.397 39.282 39.508 0 32 10 4 0 0 0 0.30202 1 21080 21080 16.566 2.951 1 6560100 11494 4903 7831 8001 13310 13310 0.05753103397364612 FDRPQELKL 9 Unmodified _FDRPQELKL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;ENST00000494124.2_1_9:19316810-19337609:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5485229492188 3 382.548629 1144.62406 0.99084 0.00037904 -0.46359 -0.00017735 0.52724 0.0002017 382.54845167975174 44.882 0.35457 40.03 39.834 40.188 -4.852 63 24 3 0 0 0 0.032796 1 27491 27491 42.312 3.6977 1 34315000 11495 4903 7831 8001 13311 13311 0.05753103397364612 FDRSCAKCAF 10 Unmodified _FDRSCAKCAF_ 0 0 0 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 REV__nc|ENSG00000063587|Q9NSD4-2|ZNF275 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7640991210938 2 574.254794 1146.49503 0.3884 0.00022304 -0.53618 -0.0003079 -0.14778 -8.4863E-05 574.2548957914489 63.134 0.28607 63.134 62.985 63.272 0 29 11 3 0 0 0 0.23227 1 35187 35187 6.7232 1.9672 1 2635700 + 11496 17347 7832 8002 13312 13312 -0.07235317828735788 FDRWHNVY 8 Unmodified _FDRWHNVY_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2669677734375 2 568.76724 1135.51993 -0.35028 -0.00019923 -2.5672 -0.0014601 -2.9175 -0.0016594 568.7659258401662 28.65 0.20294 28.65 28.558 28.761 0 18 9 3 0 0 0 0.75262 1 14814 14814 12.532 1.7076 1 2827000 + 11497 22567 7833 8003 13313 13313 -0.04241178639495047 FDSFEPGMF 9 Unmodified _FDSFEPGMF_ 0 0 0 ENSG00000177917|ENST00000326446|ARL6IP6 ENSG00000177917|ENST00000326446|ARL6IP6 ENSG00000177917|ENST00000326446|ARL6IP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7235107421875 2 538.723318 1075.43208 0.55715 0.00030015 -1.294 -0.00069709 -0.73683 -0.00039695 538.7229163855831 59.915 0.46564 59.915 59.671 60.137 0 51 21 3 0 0 0 0.47846 1 33442 33442 4.756 0 1 3800000 11498 8716 7834 8004 13314 13314 -0.1026156034511132 FDSFRGAHHH 10 Unmodified _FDSFRGAHHH_ 0 0 0 ENSG00000204103|ENST00000373313|MAFB ENSG00000204103|ENST00000373313|MAFB ENSG00000204103|ENST00000373313|MAFB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2703247070312 2 605.778671 1209.54279 0.18968 0.00011491 1.0626 0.00064369 1.2523 0.00075859 605.7790581404893 65.376 0.44598 64.892 64.575 65.021 -0.48428 49 20 4 0 0 0 0.23634 1 35566 35566 6.7232 0.51738 1 8892800 11499 10241 7835 8005 13315 13315 -0.05360159522001595 FDSNTPYGVF 10 Unmodified _FDSNTPYGVF_ 0 0 0 REV__nc|ENSG00000106853|Q14914-2|PTGR1 REV__nc|ENSG00000106853|Q14914-2|PTGR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2882690429688 2 573.758746 1145.50294 0.58331 0.00033468 1.2655 0.00072609 1.8488 0.0010608 574.260935928684 67.219 0.21882 66.737 66.695 66.914 -0.48219 16 9 2 0 0 0 0.23566 1 36805 36805 7.2892 0 1 1032100 + 11500 18541 7836 8006 13316 13316 -0.06399144035935933 FDSRWKSF 8 Unmodified _FDSRWKSF_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;ENST00000461810.1_1_2:54135441-54135975:-|nuORF ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7640380859375 2 536.764166 1071.51378 -0.21881 -0.00011745 -0.70841 -0.00038025 -0.92723 -0.0004977 536.7635893070455 35.253 0.17479 35.253 35.11 35.285 0 13 8 2 0 0 0 0.77186 1 18617 18617 5.2307 0 1 2760500 11501 989 7837 8007 13317 13317 -0.019116968710022775 FDSVLLAFG 9 Unmodified _FDSVLLAFG_ 0 0 0 ENSG00000174567|ENST00000308302|GOLT1A ENSG00000174567|ENST00000308302|GOLT1A ENSG00000174567|ENST00000308302|GOLT1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7567443847656 2 484.758018 967.501483 NaN NaN NaN NaN NaN NaN NaN 42.362 1 42.055 41.555 42.555 -0.30682 0 0 0 0.43505 1 22498 22498 18.135 2.3668 1 11502 8435 7838 8008 13318 13318 0.016432666659511597 FDTERWRH 8 Unmodified _FDTERWRH_ 0 0 0 REV__ENSG00000178031|ENST00000380548|ADAMTSL1;REV__ENST00000546040.1_1_9:18657630-18684799:+|nuORF REV__ENSG00000178031|ENST00000380548|ADAMTSL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2504272460938 2 573.775597 1145.53664 0.34163 0.00019602 -0.20634 -0.00011839 0.13529 7.7626E-05 573.775378218179 39.927 0.19844 39.927 39.812 40.01 0 16 9 2 0 0 0 8.7369 1 21457 21457 13.508 1.8676 1 1118900 + 11503 23017;28655 7839 8009 13319 13319 -0.030306777535543006 FDTIDDKVGAA 11 Unmodified _FDTIDDKVGAA_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5244445800781 3 384.524149 1150.55062 -0.48047 -0.00018475 0.70705 0.00027188 0.22659 8.7128E-05 384.8586288917773 19.977 0.30744 19.977 19.888 20.195 0 41 34 2 0 0 0 0.73115 1 10002 10002 0.45452 0.053801 1 1470200 11504 9101;16441 7840 8010 13320 13320 -0.018634898357504426 FDTYHNEVDAF 11 Unmodified _FDTYHNEVDAF_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 679.2893676757812 2 679.288399 1356.56225 0.31416 0.00021341 0.81626 0.00055447 1.1304 0.00076788 679.2889880167997 53.083 0.20763 52.632 52.515 52.723 -0.45173 18 10 2 0 0 0 0.65846 1 28711 28711 8.1555 0.54658 1 2147600 11505 4483 7841 8011 13321 13321 -0.10177292812409178 FDVAYGFYSGK 11 Unmodified _FDVAYGFYSGK_ 0 0 0 REV__ENSG00000077943|ENST00000378076|ITGA8 REV__ENSG00000077943|ENST00000378076|ITGA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7971801757812 2 627.295496 1252.57644 0.22861 0.00014341 0.43453 0.00027258 0.66314 0.00041599 627.2957208353153 94.106 1.7774 93.686 93.348 95.126 -0.42044 168 91 2 0 0 0 0.73506 1 52055 52055 0.96228 0.36078 1 516830 + 11506 17619 7842 8012 13322 13322 -0.03974595593490449 FDVDAADEKF 10 Unmodified _FDVDAADEKF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7639770507812 2 578.761486 1155.50842 0.62093 0.00035937 0.10507 6.0809E-05 0.72599 0.00042018 578.7614258306955 56.34 0.58212 50.363 50.067 50.649 -5.9769 101 33 4 0 0 0 0.52888 1 35739 35739 14.838 0 1 373550000 11507 1504 7843 8013 13323 13323 -0.06311465244152714 FDVEKECL 8 Unmodified _FDVEKECL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7315063476562 2 491.731143 981.447733 NaN NaN NaN NaN NaN NaN NaN 75.416 1 75.416 74.916 75.916 0 0 0 0 0.97444 1 41951 41951 4.756 0 1 11508 2210;16099 7844 8014 13324 13324 -0.04373273828082347 FDVHCSGRE 9 Unmodified _FDVHCSGRE_ 0 0 0 REV__nc|ENSG00000142512|Q96LC7-4|SIGLEC10 REV__nc|ENSG00000142512|Q96LC7-4|SIGLEC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.4884033203125 3 350.487153 1048.43963 NaN NaN NaN NaN NaN NaN NaN 77.585 1 77.585 77.085 78.085 0 0 0 0 0.84892 1 43132 43132 0.86438 0.40604 1 + 11509 29670 7845 8015 13325 13325 -0.08265408024817589 FDVLITRGDV 10 Unmodified _FDVLITRGDV_ 0 0 0 REV__ENST00000464678.5_1_22:51208306-51220722:-|nuORF REV__ENST00000464678.5_1_22:51208306-51220722:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8123779296875 2 567.811313 1133.60807 0.67347 0.0003824 2.9164 0.0016559 3.5898 0.0020383 567.8126693757862 49.796 0.33763 49.796 49.649 49.986 0 26 15 2 0 0 0 0.25982 1 27435 27435 29.841 0.759 1 3080400 + 11510 17657 7846 8016 13326 13326 0.04661397160452907 FDVLLHEPF 9 Unmodified _FDVLLHEPF_ 0 0 0 REV__nc|ENSG00000087237|P11597-2|CETP REV__nc|ENSG00000087237|P11597-2|CETP MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2925415039062 2 558.78985 1115.56515 1.0646 0.00059492 1.258 0.00070297 2.3227 0.0012979 559.291750365505 75.369 2.1683 69.193 67.548 69.717 -6.1757 258 114 3 0 0 0 0.28023 1 49086 49086 13.508 0 1 28915000 + 11511 17780 7847 8017 13327 13327 0.011986271030536955 FDVNEFDQYL 10 Unmodified _FDVNEFDQYL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MSMS AL20221201_MKP_PDAC_01 4 430.5287170410156 3 430.527671 1288.56118 NaN NaN NaN NaN NaN NaN NaN 94.8 1 88.625 88.125 89.125 -6.1757 0 0 0 0.97302 1 62793 62793 1.7423 0.52744 1 11512 3847 7848 8018 13328 13328 -0.07155507181323628 FDVPSACL 8 Unmodified _FDVPSACL_ 0 0 0 REV__ENST00000545137.5_1_15:74486162-74488565:-|nuORF REV__ENST00000545137.5_1_15:74486162-74488565:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2028198242188 2 426.202021 850.38949 1.1188 0.00047685 -0.68009 -0.00028985 0.43874 0.00018699 426.2016900121405 83.197 0.59777 77.022 76.747 77.345 -6.1757 53 31 2 0 0 0 0.5953 2 54635 54635;54767 26.341 3.1929 1 19303000 + 11513 28644 7849 8019 13329;13330 13329 -0.04168910682699334 FDVTVELDGF 10 Unmodified _FDVTVELDGF_ 0 0 0 REV__nc|ENSG00000103043|Q08AM6-2|VAC14 REV__nc|ENSG00000103043|Q08AM6-2|VAC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2742919921875 2 571.274229 1140.53391 0.6933 0.00039607 1.7722 0.0010124 2.4655 0.0014085 571.274894085528 71.74 0.36799 71.264 71.047 71.415 -0.47609 38 14 3 0 0 0 0.44373 1 39248 39248 19.257 5.3509 1 2260500 + 11514 18279 7850 8020 13331 13331 -0.030739907217139262 FDVYNHRWRS 10 Unmodified _FDVYNHRWRS_ 0 0 0 ENSG00000185915|ENST00000379499|KLHL34 ENSG00000185915|ENST00000379499|KLHL34 ENSG00000185915|ENST00000379499|KLHL34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.332763671875 2 690.33381 1378.65307 -0.0091219 -6.2972E-06 -0.80227 -0.00055383 -0.81139 -0.00056013 690.3334725718496 52.627 0.26118 52.627 52.489 52.75 0 28 11 3 0 0 0 0.6785 1 29111 29111 5.2969 0.39987 1 5386000 11515 9427 7851 8021 13332 13332 -0.021113592536494252 FDWFVCHP 8 Unmodified _FDWFVCHP_ 0 0 0 REV__ENSG00000153292|ENST00000371253|ADGRF1 REV__ENSG00000153292|ENST00000371253|ADGRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7275390625 2 525.728738 1049.44292 NaN NaN NaN NaN NaN NaN NaN 94.354 1 94.354 93.854 94.854 0 0 0 0 0.97444 1 52155 52155 0.79363 0.10326 1 + 11516 21167 7852 8022 13333 13333 -0.07982113180196393 FDWLRVSNF 9 Unmodified _FDWLRVSNF_ 0 0 0 REV__nc|ENSG00000075975|Q9H000-2|MKRN2 REV__nc|ENSG00000075975|Q9H000-2|MKRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.2999267578125 2 592.298373 1182.58219 0.86765 0.00051391 0.035006 2.0734E-05 0.90265 0.00053464 592.2983049451966 63.941 0.33511 63.93 63.741 64.077 -0.010529 42 16 4 0 0 0 0.19127 1 34957 34957 24.021 2.2739 1 19027000 + 11517 17579 7853 8023 13334 13334 -0.0017945229114957328 FDWWATMHF 9 Unmodified _FDWWATMHF_ 0 0 0 REV__ENST00000490830.5_1_11:3845682-3846685:+|nuORF REV__ENST00000490830.5_1_11:3845682-3846685:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.7647705078125 2 620.765852 1239.51715 NaN NaN NaN NaN NaN NaN NaN 61.235 1 61.235 60.735 61.735 0 0 0 0 0.7243 1 34144 34144 8.5933 3.8373 1 + 11518 20975 7854 8024 13335 13335 -0.09302770088652323 FDYFPKPYPNS 11 Unmodified _FDYFPKPYPNS_ 0 0 0 ENST00000525122.1_1_8:145151275-145151461:+|nuORF;ENST00000533444.1_1_8:145150729-145152236:+|nuORF;ENSG00000179091|ENST00000318911|CYC1 ENST00000525122.1_1_8:145151275-145151461:+|nuORF ENST00000525122.1_1_8:145151275-145151461:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 458.884521484375 3 458.883677 1373.6292 NaN NaN NaN NaN NaN NaN NaN 46.715 1 41.635 41.135 42.135 -5.0805 0 0 0 0.84805 1 28909 28909 9.7643 1.3199 1 11519 8810 7855 8025 13336 13336 -0.04266637530668049 FEAEEEMQI 9 Unmodified _FEAEEEMQI_ 0 0 0 nc|ENSG00000188152|Q5VZR2-2|NUTM2G;nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000188152|ENST00000372322|NUTM2G;ENSG00000130950|ENST00000253262|NUTM2F;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A nc|ENSG00000188152|Q5VZR2-2|NUTM2G nc|ENSG00000188152|Q5VZR2-2|NUTM2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2417602539062 2 563.242072 1124.46959 0.21552 0.00012139 -0.5523 -0.00031108 -0.33678 -0.00018969 563.241955315207 35.789 0.2043 35.789 35.674 35.878 0 17 9 3 0 0 0 0.23158 1 18945 18945 20.454 7.9221 1 3046600 11520 4281 7856 8026 13337 13337 -0.08766513870159542 FEAEGHLYIVM 11 Unmodified _FEAEGHLYIVM_ 0 0 0 nc|ENSG00000136098|P51956-2|NEK3;ENSG00000136098|ENST00000610828|NEK3;ENST00000552973.1_1_13:52722507-52730359:-|nuORF nc|ENSG00000136098|P51956-2|NEK3 nc|ENSG00000136098|P51956-2|NEK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8795776367188 3 436.88128 1307.62201 NaN NaN NaN NaN NaN NaN NaN 16.246 1 16.247 15.747 16.747 0.0010548 0 0 0 0.9428 1 8004 8004 0.50596 0.23694 1 11521 4785 7857 8027 13338 13338 -0.01949693402775665 FEAFWINR 8 Unmodified _FEAFWINR_ 0 0 0 REV__nc|ENSG00000124493|Q14833-3|GRM4 REV__nc|ENSG00000124493|Q14833-3|GRM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.774169921875 2 541.774534 1081.53451 0.76511 0.00041452 -0.24121 -0.00013068 0.5239 0.00028383 541.774283208177 19.086 0.23548 16.465 16.334 16.569 -2.6215 26 15 2 0 0 0 0.80311 1 10056 10056 4.756 0 1 2471100 + 11522 19451 7858 8028 13339 13339 -0.0029910649134308187 FEAKAWHGF 9 Unmodified _FEAKAWHGF_ 0 0 0 IMPDH2|p.R136W|1|0.2|ENSG00000178035|chr3:49027835-49027835|G/A|missense_variant IMPDH2|p.R136W|1|0.2|ENSG00000178035|chr3:49027835-49027835|G/A|missense_variant IMPDH2|p.R136W|1|0.2|ENSG00000178035|chr3:49027835-49027835|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7669677734375 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 82.743 1 82.743 82.243 83.243 0 0 0 0 0.84369 1 45898 45898 2.3027 0 1 11523 15930 7859 8029 13340 13340 -0.02323393008396124 FEAKPPELN 9 Unmodified _FEAKPPELN_ 0 0 0 REV__ENSG00000185527|ENST00000331056|PDE6G REV__ENSG00000185527|ENST00000331056|PDE6G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7726440429688 2 522.771657 1043.52876 0.38231 0.00019986 1.2345 0.00064537 1.6168 0.00084524 522.7726048279759 64.614 0.62776 64.614 64.386 65.013 0 83 29 4 0 0 0 0.23158 1 36080 36080 20.454 1.0146 1 18793000 + 11524 23508 7860 8030 13341 13341 0.008737502063468128 FEALKEELL 9 Unmodified _FEALKEELL_ 0 0 0 ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3048095703125 2 546.30279 1090.59103 0.25394 0.00013873 0.11645 6.3619E-05 0.3704 0.00020235 546.3030552847694 85.762 0.23736 85.762 85.631 85.868 0 16 9 2 0 0 0 0.46501 1 47507 47507 9.3831 0.63772 1 388030 11525 12975 7861 8031 13342 13342 0.04935476554669549 FEANDVVVYL 10 Unmodified _FEANDVVVYL_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7987670898438 2 584.797872 1167.58119 0.40603 0.00023745 1.1265 0.00065877 1.5325 0.00089622 584.7984736477549 38.859 0.76134 38.859 38.62 39.381 0 83 35 4 0 0 0 0.42143 1 20888 20888 20.415 1.0526 1 13232000 + 11526 29704 7862 8032 13343 13343 0.004102885493011854 FEANDVVVYL 10 Unmodified _FEANDVVVYL_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.797872 1167.58119 -0.12269 -7.1749E-05 -0.92064 -0.00053839 -1.0433 -0.00061013 584.796310182029 39.126 0.29477 38.84 38.63 38.925 -0.28687 -0.0097219 -0.0022052 NaN 20.415 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2011200 + 11527 29704 7862 8032 0.004102885493011854 FEAPRKLPPII 11 Unmodified _FEAPRKLPPII_ 0 0 0 REV__nc|ENSG00000141052|Q8IZQ8|MYOCD REV__nc|ENSG00000141052|Q8IZQ8|MYOCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.889892578125 2 640.889898 1279.76524 -0.28149 -0.0001804 -0.18626 -0.00011937 -0.46774 -0.00029977 640.8894947875114 98.941 0.10522 92.766 92.702 92.807 -6.1757 13 7 2 0 0 0 0.30985 1 65738 65738 26.268 5.8536 1 48322000 + 11528 20515 7863 8033 13344 13344 0.13655101770655165 FEAQAPPSA 9 Unmodified _FEAQAPPSA_ 0 0 0 ENSG00000167476|ENST00000300961|JSRP1 ENSG00000167476|ENST00000300961|JSRP1 ENSG00000167476|ENST00000300961|JSRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 917.4365844726562 1 917.436323 916.429047 -0.15832 -0.00014525 -0.51322 -0.00047085 -0.67154 -0.0006161 917.4359216547548 71.686 0.29543 71.686 71.523 71.819 0 20 12 2 0 0 0 0.14 1 39899 39899 29.082 2.1979 1 962480 11529 7613 7864 8034 13345 13345 -0.03251067407620667 FEAVGVTY 8 Unmodified _FEAVGVTY_ 0 0 0 ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 885.435791015625 1 885.435261 884.427984 -0.45176 -0.00040001 0.33391 0.00029565 -0.11786 -0.00010435 885.4354806523992 41.503 0.28265 41.503 41.385 41.668 0 31 14 3 0 0 0 0.26159 1 22467 22467 60.39 0 1 21145000 11530 5766 7865 8035 13346 13346 -0.018852817765150576 FEAVGVTY 8 Unmodified _FEAVGVTY_ 0 0 0 ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L MSMS AL20221201_MKP_PDAC_01 4 443.2214660644531 2 443.221268 884.427984 NaN NaN NaN NaN NaN NaN NaN 46.928 1 41.848 41.348 42.348 -5.0805 0 0 0 0.50394 1 29068 29068 40.449 2.2974 1 11531 5766 7865 8035 13347 13347 -0.018852817765150576 FEDEEAYC 8 Unmodified _FEDEEAYC_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2727661132812 2 503.17894 1004.34333 0.45956 0.00023124 3.776 0.0019 4.2355 0.0021312 503.18063482402226 37.997 0.16309 37.997 37.865 38.028 0 11 7 2 0 0 0 8.7369 1 20266 20266 6.3541 0.59368 1 989440 + 11532 21942 7866 8036 13348 13348 -0.15867020375458196 FEDFWNRI 8 Unmodified _FEDFWNRI_ 0 0 0 ENST00000476464.5_1_3:64008316-64008487:-|nuORF ENST00000476464.5_1_3:64008316-64008487:-|nuORF ENST00000476464.5_1_3:64008316-64008487:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7719116210938 2 563.769448 1125.52434 0.96437 0.00054368 1.0642 0.00059994 2.0285 0.0011436 563.7713506037572 65.126 0.56367 65.126 64.739 65.303 1.5259E-05 93 27 5 0 0 0 0.77186 1 35529 35529 9.3474 0 1 20424000 11533 13984 7867 8037 13349 13349 -0.033397142165767946 FEDGMYANL 9 Unmodified _FEDGMYANL_ 0 0 0 ENSG00000083720|ENST00000196371|OXCT1;ENST00000447263.1_1_1:39980824-39982159:+|nuORF;ENSG00000198754|ENST00000327582|OXCT2 ENSG00000083720|ENST00000196371|OXCT1 ENSG00000083720|ENST00000196371|OXCT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2247924804688 2 530.226225 1058.4379 NaN NaN NaN NaN NaN NaN NaN 65.795 1 65.795 65.295 66.295 0 0 0 0 0.82739 1 36696 36696 4.3292 1.44 1 11534 1370 7868 8038 13350 13350 -0.08898461833473448 FEDGSVLKQF 10 Unmodified _FEDGSVLKQF_ 0 0 0 ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1 ENST00000512419.5_1_4:41258929-41270087:+|nuORF ENST00000512419.5_1_4:41258929-41270087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.2977294921875 2 585.295496 1168.57644 2.094 0.0012256 1.7067 0.00099894 3.8007 0.0022245 585.2964698589282 100.24 0.1431 100.21 100.12 100.27 -0.036301 7 4 2 0 0 0 0.54684 1 55701 55701 13.906 0.39817 1 2800200 11535 6316 7869 8039 13351 13351 -0.001105955934690428 FEDGSVLKQF 10 Unmodified _FEDGSVLKQF_ 0 0 0 ENST00000512419.5_1_4:41258929-41270087:+|nuORF;ENSG00000154277|ENST00000284440|UCHL1 ENST00000512419.5_1_4:41258929-41270087:+|nuORF ENST00000512419.5_1_4:41258929-41270087:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.295496 1168.57644 0.22199 0.00012993 4.3087 0.0025218 4.5307 0.0026518 585.2978476909456 100.32 0.14095 100.16 100.08 100.22 -0.15751 -0.024378 0.0012211 NaN 13.906 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 344120 11536 6316 7869 8039 -0.001105955934690428 FEDLCKPDF 9 Unmodified _FEDLCKPDF_ 0 0 0 REV__ENST00000476321.5_1_1:110279982-110280760:-|nuORF REV__ENST00000476321.5_1_1:110279982-110280760:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2769775390625 2 557.2497 1112.48485 0.52144 0.00029057 1.679 0.00093561 2.2004 0.0012262 557.2504119705542 43.232 0.31636 43.232 43.121 43.438 0 22 15 2 0 0 0 0.17331 1 23550 23550 22.736 3.2973 1 4108000 + 11537 19960 7870 8040 13352 13352 -0.06689602282335727 FEDLRRDVF 9 Unmodified _FEDLRRDVF_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5396118164062 3 399.540134 1195.59857 -0.095352 -3.8097E-05 -0.20643 -8.2476E-05 -0.30178 -0.00012057 399.5398746379268 18.08 0.15365 18.086 18.018 18.171 0.0060463 12 9 2 0 0 0 0.58865 1 9153 9153 1.0715 0 1 710260 11538 3869 7871 8041 13353 13353 0.008596288749231462 FEDLRRDVF 9 Unmodified _FEDLRRDVF_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.540134 1195.59857 -0.52792 -0.00021092 1.7746 0.00070901 1.2466 0.00049809 399.5406555266327 18.431 0.12916 18.454 18.38 18.51 0.023106 0.18379 0.00032001 NaN 1.0715 58 27 3 NaN NaN NaN NaN 0 NaN NaN 0 559710 11539 3869 7871 8041 0.008596288749231462 FEDLSNHYL 9 Unmodified _FEDLSNHYL_ 0 0 0 REV__ENSG00000125848|ENST00000341420|FLRT3 REV__ENSG00000125848|ENST00000341420|FLRT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8588256835938 3 379.845223 1136.51384 -0.49095 -0.00018648 2.1059 0.00079993 1.615 0.00061344 379.84581904960794 29.632 0.16953 29.632 29.572 29.742 0 13 9 2 0 0 0 0.21367 1 15395 15395 2.7352 0 1 1019600 + 11540 19520 7872 8042 13354 13354 -0.048957416616758564 FEDPFEYVFSF 11 Unmodified _FEDPFEYVFSF_ 0 0 0 nc|ENSG00000293135|Q8WWF6|DNAJB3 nc|ENSG00000293135|Q8WWF6|DNAJB3 nc|ENSG00000293135|Q8WWF6|DNAJB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.8148193359375 2 713.813719 1425.61288 -0.0093163 -6.6501E-06 0.75879 0.00054163 0.74947 0.00053498 713.8141125988597 94.411 0.17185 94.411 94.275 94.446 0 17 14 2 0 0 0 0.73115 1 52150 52150 1.3295 0.13619 1 241530 11541 16651 7873 8043 13355 13355 -0.08289763487459822 FEDYSACPYG 10 Unmodified _FEDYSACPYG_ 0 0 0 REV__nc|ENSG00000266200|P54317|PNLIPRP2 REV__nc|ENSG00000266200|P54317|PNLIPRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2227172851562 2 576.221139 1150.42773 0.44663 0.00025736 1.148 0.0006615 1.5946 0.00091885 576.2221077154189 39.799 0.32636 35.269 35.044 35.371 -4.5294 57 20 4 0 0 0 0.69377 1 23599 23599 3.5965 3.5965 1 30547000 + 11542 29995 7874 8044 13356 13356 -0.14147069558703151 FEDYVYWTDWE 11 Unmodified _FEDYVYWTDWE_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2128295898438 3 518.213752 1551.61943 NaN NaN NaN NaN NaN NaN NaN 3.4065 1 3.3942 2.8942 3.8942 -0.012334 0 0 0 0.94337 1 1731 1731 0.094841 0.094841 1 11543 3705 7875 8045 13357 13357 -0.1343187032671267 FEEANRNFI 9 Unmodified _FEEANRNFI_ 0 0 0 REV__ENSG00000138382|ENST00000260953|METTL5 REV__ENSG00000138382|ENST00000260953|METTL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5209350585938 3 380.520851 1138.54072 0.72605 0.00027628 -0.0010982 -4.1788E-07 0.72495 0.00027586 380.5210672678331 24.367 0.26437 21.539 21.428 21.693 -2.8273 21 14 2 0 0 0 0.41742 1 13253 13253 7.609 0 1 4006500 + 11544 20328 7876 8046 13358 13358 -0.023006330504813377 FEEDRIYRHL 10 Unmodified _FEEDRIYRHL_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.349853515625 2 689.349126 1376.6837 NaN NaN NaN NaN NaN NaN NaN 83.815 1 83.815 83.315 84.315 0 0 0 0 0.99248 1 46478 46478 1.4819 0.28856 1 11545 10934 7877 8047 13359 13359 0.010423743407500297 FEEEEEVDY 9 Unmodified _FEEEEEVDY_ 0 0 0 REV__ENSG00000101463|ENST00000376862|SYNDIG1 REV__ENSG00000101463|ENST00000376862|SYNDIG1 MSMS AL20221201_MKP_PDAC_01 4 594.7326049804688 2 594.732591 1187.45063 NaN NaN NaN NaN NaN NaN NaN 88.234 1 82.059 81.559 82.559 -6.1757 0 0 0 0.82396 1 58203 58203 4.756 0.42677 1 + 11546 18177 7878 8048 13360 13360 -0.13559771960217404 FEEFIMLM 8 Unmodified _FEEFIMLM_ 0 0 0 ENSG00000163220|ENST00000368738|S100A9 ENSG00000163220|ENST00000368738|S100A9 ENSG00000163220|ENST00000368738|S100A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2470092773438 2 530.248114 1058.48168 0.74783 0.00039654 -1.2816 -0.00067954 -0.53373 -0.00028301 530.2473638197929 42.44 0.44545 42.44 42.218 42.663 0 64 21 4 0 0 0 0.67481 1 22991 22991 19.439 19.439 1 8048500 11547 6966 7879 8049 13361 13361 -0.045225686606954696 FEEKCLLDY 9 Unmodified _FEEKCLLDY_ 0 0 0 REV__nc|ENSG00000188452|Q49MI3-8|CERKL REV__nc|ENSG00000188452|Q49MI3-8|CERKL MSMS AL20221201_MKP_PDAC_01 4 387.1823425292969 3 387.182847 1158.52671 NaN NaN NaN NaN NaN NaN NaN 24.964 1 22.081 21.581 22.581 -2.8831 0 0 0 0.7453 1 13626 13626 4.897 0.36815 1 + 11548 23712 7880 8050 13362 13362 -0.04621046593774736 FEEKQLLEL 9 Unmodified _FEEKQLLEL_ 0 0 0 REV__ENSG00000117036|ENST00000368192|ETV3 REV__ENSG00000117036|ENST00000368192|ETV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.813720703125 2 574.813522 1147.61249 0.22508 0.00012938 0.49885 0.00028675 0.72394 0.00041613 574.8137489145207 20.826 0.37539 20.836 20.601 20.976 0.010551 33 18 2 0 0 0 0.51218 1 10562 10562 6.7232 0.51738 1 2748200 + 11549 19082 7881 8051 13363 13363 0.044588615833845324 FEEKRYREMRR 11 Unmodified _FEEKRYREMRR_ 0 0 0 ENSG00000085511|ENST00000392142|MAP3K4;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;ENST00000541901.5_1_6:161519319-161529903:+|nuORF ENSG00000085511|ENST00000392142|MAP3K4 ENSG00000085511|ENST00000392142|MAP3K4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.413330078125 2 800.412266 1598.80998 NaN NaN NaN NaN NaN NaN NaN 99.248 1 99.22 98.72 99.72 -0.028282 0 0 0 0.94301 1 55123 55123 0.35063 0.35063 1 11550 1412 7882 8052 13364 13364 0.034525575743828085 FEEKVRNTSP 10 Unmodified _FEEKVRNTSP_ 0 0 0 ENST00000497003.5_1_2:178552959-178791632:-|nuORF ENST00000497003.5_1_2:178552959-178791632:-|nuORF ENST00000497003.5_1_2:178552959-178791632:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.8741760253906 3 402.875293 1205.60405 NaN NaN NaN NaN NaN NaN NaN 31.36 1 31.39 30.89 31.89 0.030106 0 0 0 0.94046 1 16425 16425 6.1918 3.1196 1 11551 14390 7883 8053 13365 13365 0.009473076667518399 FEELKSWRDVY 11 Unmodified _FEELKSWRDVY_ 0 0 0 nc|ENSG00000162929|Q6NSI8-3|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;ENSG00000162929|ENST00000402291|SANBR nc|ENSG00000162929|Q6NSI8-3|SANBR nc|ENSG00000162929|Q6NSI8-3|SANBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.5796203613281 3 491.245386 1470.71433 0.11934 5.8623E-05 -0.59294 -0.00029128 -0.4736 -0.00023265 491.5789916621809 37.713 0.22172 37.442 37.303 37.525 -0.27133 14 9 2 0 0 0 0.73237 1 19854 19854 1.2148 0.70888 1 2004800 11552 6932 7884 8054 13366 13366 -0.002198920648652347 FEELVLDAF 9 Unmodified _FEELVLDAF_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7736206054688 2 541.773865 1081.53318 0.067729 3.6694E-05 0.45535 0.0002467 0.52308 0.00028339 541.7741805140628 17.795 0.11222 17.8 17.74 17.852 0.0050564 9 6 2 0 0 0 0.54444 1 8985 8985 4.756 0.42677 1 1515100 + 11553 21911 7885 8055 13367 13367 -0.004327853707536633 FEELVLDAF 9 Unmodified _FEELVLDAF_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7738037109375 2 541.773865 1081.53318 0.071919 3.8964E-05 1.1164 0.00060485 1.1883 0.00064382 541.7742716589001 18.006 0.11668 18.012 17.952 18.068 0.0060463 12 7 2 0 0 0 0.54444 1 9111 9111 4.756 1.8668 1 743330 + 11554 21911 7885 8055 13368 13368 -0.004327853707536633 FEELVLDAF 9 Unmodified _FEELVLDAF_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.773865 1081.53318 0.067729 3.6694E-05 0.45535 0.0002467 0.52308 0.00028339 541.7741805140628 17.795 0.11222 17.8 17.74 17.852 0.0050564 0 0 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1515100 + 11555 21911 7885 8055 -0.004327853707536633 FEENGACKY 9 Carbamidomethyl (C) _FEENGAC(Carbamidomethyl (C))KY_ FEENGAC(1)KY FEENGAC(56)KY 0 1 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.2362670898438 2 559.234581 1116.45461 NaN NaN NaN NaN NaN NaN NaN 25.014 1 22.131 21.631 22.631 -2.8831 0 0 0 0.053277 1 13657 13657 56.177 18.001 1 11556 9393 7886 8056 13369 13369 876 -0.09895960947505955 FEEPEVGRGD 10 Unmodified _FEEPEVGRGD_ 0 0 0 REV__ENSG00000122733|ENST00000242315|PHF24 REV__ENSG00000122733|ENST00000242315|PHF24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1731872558594 3 378.840249 1133.49892 -0.39357 -0.0001491 -1.7629 -0.00066786 -2.1565 -0.00081696 378.8397176352779 24.292 0.26361 24.292 24.227 24.49 0 26 16 2 0 0 0 0.6966 1 12399 12399 1.5923 0.37745 1 1633800 + 11557 19357 7887 8057 13370 13370 -0.06249233529638332 FEERMRQF 8 Unmodified _FEERMRQF_ 0 0 0 REV__ENSG00000167005|ENST00000300291|NUDT21 REV__ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.775634765625 2 571.774208 1141.53386 0.36041 0.00020608 2.5356 0.0014498 2.896 0.0016558 571.7754281681972 85.555 0.24261 85.555 85.459 85.701 0 12 9 2 0 0 0 0.80676 1 47419 47419 2.5775 0.51773 1 301480 + 11558 22173 7888 8058 13371 13371 -0.031242692026808072 FEERMRQF 8 Unmodified _FEERMRQF_ 0 0 0 REV__ENSG00000167005|ENST00000300291|NUDT21 REV__ENSG00000167005|ENST00000300291|NUDT21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.775634765625 2 571.774208 1141.53386 NaN NaN NaN NaN NaN NaN NaN 85.005 1 84.504 84.004 85.004 -0.5015 0 0 0 0.97444 1 46513 46513 2.5775 0.27475 1 + 11559 22173 7888 8058 13372 13372 -0.031242692026808072 FEESFVIHFI 10 Unmodified _FEESFVIHFI_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5520935058594 3 423.216768 1266.62847 0.10307 4.3621E-05 2.264 0.00095818 2.3671 0.0010018 423.2175308629267 19.92 0.18154 19.928 19.84 20.022 0.0078506 19 9 3 0 0 0 0.69064 1 10132 10132 1.9064 0 1 1007300 + 11560 21687 7889 8059 13373 13373 0.005825678202882045 FEESFVIHFI 10 Unmodified _FEESFVIHFI_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 423.216768 1266.62847 -0.44932 -0.00019016 3.5001 0.0014813 3.0508 0.0012911 423.21831383150436 19.873 0.17313 19.902 19.801 19.974 0.028357 -0.012946 0.00061665 NaN 1.9064 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 697770 + 11561 21687 7889 8059 0.005825678202882045 FEESFVIHFI 10 Unmodified _FEESFVIHFI_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 423.216768 1266.62847 0.10307 4.3621E-05 2.264 0.00095818 2.3671 0.0010018 423.2175308629267 19.92 0.18154 19.928 19.84 20.022 0.0078506 0.012946 -0.00095273 NaN 1.9064 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1007300 + 11562 21687 7889 8059 0.005825678202882045 FEETNKSERTE 11 Unmodified _FEETNKSERTE_ 0 0 0 nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13 nc|ENSG00000123200|Q5T200-2|ZC3H13 nc|ENSG00000123200|Q5T200-2|ZC3H13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2117309570312 3 457.212522 1368.61574 -0.1536 -7.0227E-05 -1.3734 -0.00062793 -1.527 -0.00069816 457.2120946994056 26.858 0.23243 26.858 26.74 26.972 0 27 10 4 0 0 0 0.71938 1 13815 13815 2.4348 0.52841 1 2883800 11563 3690 7890 8060 13374 13374 -0.053825401005724416 FEFCPDEED 9 Unmodified _FEFCPDEED_ 0 0 0 REV__ENSG00000165905|ENST00000401752|LARGE2 REV__ENSG00000165905|ENST00000401752|LARGE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7037963867188 2 565.70278 1129.39101 0.2107 0.0001192 -0.48286 -0.00027316 -0.27216 -0.00015396 565.7023866199371 69.948 0.29162 69.948 69.775 70.067 0 47 39 2 0 0 0 0.32871 1 38942 38942 15.847 4.2069 1 4241200 + 11564 22061 7891 8061 13375 13375 -0.16851366175251314 FEFELFEHGF 10 Unmodified _FEFELFEHGF_ 0 0 0 REV__ENST00000537852.5_1_12:10762420-10766167:-|nuORF REV__ENST00000537852.5_1_12:10762420-10766167:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.293701171875 2 651.295496 1300.57644 NaN NaN NaN NaN NaN NaN NaN 47.999 1 47.999 47.499 48.499 0 0 0 0 0.96627 1 26307 26307 4.3292 0 1 + 11565 18735 7892 8062 13376 13376 -0.061825955934864396 FEFNELFL 8 Unmodified _FEFNELFL_ 0 0 0 nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.80908203125 2 529.7633 1057.51205 NaN NaN NaN NaN NaN NaN NaN 44.291 1 44.269 43.769 44.769 -0.022064 0 0 0 0.9489 1 23762 23762 10.824 0.75 1 11566 864 7893 8063 13377 13377 -0.01440750679626035 FEFNYVDTF 9 Unmodified _FEFNYVDTF_ 0 0 0 REV__ENSG00000179630|ENST00000325686|LACC1 REV__ENSG00000179630|ENST00000325686|LACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2615966796875 2 591.261122 1180.50769 0.083333 4.9272E-05 0.14844 8.7765E-05 0.23177 0.00013704 591.2612762276148 86.969 0.31271 86.969 86.805 87.118 0 48 20 3 0 0 0 0.58865 1 48220 48220 2.0598 0 1 1370300 + 11567 23108 7894 8064 13378 13378 -0.0753425989319112 FEGDTVIVCP 10 Unmodified _FEGDTVIVCP_ 0 0 0 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 ENSG00000171241|ENST00000303383|SHCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.257080078125 2 540.257525 1078.5005 0.36312 0.00019618 1.0055 0.00054323 1.3686 0.00073941 540.2583170792687 83.231 0.47147 82.733 82.557 83.028 -0.49751 48 18 4 0 0 0 0.60623 1 45527 45527 10.824 1.4765 1 4220000 11568 8084 7895 8065 13379 13379 -0.03561315765273321 FEGLESLVKL 10 Unmodified _FEGLESLVKL_ 0 0 0 ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.2778930664062 2 567.823889 1133.63323 0.84426 0.00047939 -2.6648 -0.0015131 -1.8205 -0.0010337 567.8217113599958 69.577 0.25769 63.402 63.304 63.562 -6.1757 23 13 2 0 0 0 0.22941 1 45495 45495 13.906 4.5586 1 15652000 11569 10794 7896 8066 13380 13380 0.07175451963053092 FEGQPSPSP 9 Unmodified _FEGQPSPSP_ 0 0 0 ENST00000356840.7_1_6:16129383-16129569:+|nuORF ENST00000356840.7_1_6:16129383-16129569:+|nuORF ENST00000356840.7_1_6:16129383-16129569:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.220947265625 2 473.219257 944.423961 NaN NaN NaN NaN NaN NaN NaN 56.875 1 56.807 56.307 57.307 -0.068737 0 0 0 0.83049 1 30948 30948 3.9444 0.3479 1 11570 12099 7897 8067 13381 13381 -0.0504737127023418 FEGRKFSL 8 Unmodified _FEGRKFSL_ 0 0 0 REV__nc|ENSG00000254772|P26641-2|EEF1G REV__nc|ENSG00000254772|P26641-2|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2718200683594 2 492.269084 982.523616 1.1662 0.0005741 1.0468 0.0005153 2.213 0.0010894 492.2699355793648 20.985 0.36123 18.292 18.11 18.471 -2.693 41 20 3 0 0 0 0.80232 1 11126 11126 5.2307 0 1 3025400 + 11571 28369 7898 8068 13382 13382 0.03165491134382137 FEGTMCEEVAF 11 Unmodified _FEGTMCEEVAF_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS AL20221201_MKP_PDAC_01 4 631.7554321289062 2 631.757032 1261.49951 NaN NaN NaN NaN NaN NaN NaN 46.506 1 41.425 40.925 41.925 -5.0805 0 0 0 0.85601 1 28741 28741 9.3831 2.0939 1 + 11572 17911 7899 8069 13383 13383 -0.12077898196480419 FEGVSPPF 8 Unmodified _FEGVSPPF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2159423828125 2 440.215986 878.417419 0.47087 0.00020728 0.44117 0.00019421 0.91204 0.00040149 440.21610530067 84.819 0.49547 84.319 84.061 84.557 -0.49961 38 21 2 0 0 0 0.80676 1 46339 46339 2.5775 1.7838 1 1133900 + 11573 21892 7900 8070 13384 13384 -0.026652644309479 FEGYRMCICHL 11 Unmodified _FEGYRMCICHL_ 0 0 0 ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2059020996094 3 457.871733 1370.59337 0.52228 0.00023914 -1.1414 -0.00052261 -0.61911 -0.00028347 457.87126210937635 27.343 0.41364 24.306 24.082 24.496 -3.0365 46 20 3 0 0 0 0.71036 1 15185 15185 1.3296 0.11481 1 62809000 11574 3586 7901 8071 13385 13385 -0.07710457575149121 FEHCGSVRMF 10 Unmodified _FEHCGSVRMF_ 0 0 0 ENST00000584861.5_1_17:73663452-73668036:+|nuORF ENST00000584861.5_1_17:73663452-73668036:+|nuORF ENST00000584861.5_1_17:73663452-73668036:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2653198242188 2 606.768068 1211.52158 0.32387 0.00019652 -2.4294 -0.0014741 -2.1056 -0.0012776 606.7666692744552 74.401 0.27127 74.447 74.302 74.573 0.045929 21 11 3 0 0 0 0.46514 1 41010 41010 18.146 4.2403 1 2811200 11575 15599 7902 8072 13386 13386 -0.075716289373986 FEIGLHKYF 9 Unmodified _FEIGLHKYF_ 0 0 0 REV__nc|ENSG00000157168|Q02297-11|NRG1 REV__nc|ENSG00000157168|Q02297-11|NRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2061462402344 3 385.206203 1152.59678 1.7481 0.00067338 -0.13751 -5.2969E-05 1.6106 0.00062042 385.2058391695272 79.363 1.0971 73.187 72.694 73.791 -6.1757 144 63 4 0 0 0 0.49272 1 51824 51824 4.897 0 1 26197000 + 11576 16735 7903 8073 13387 13387 0.0265861985697029 FEIYEPRF 8 Unmodified _FEIYEPRF_ 0 0 0 REV__ENSG00000155754|ENST00000439140|C2CD6 REV__ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7744140625 2 550.7742 1099.53385 0.7011 0.00038615 -0.91118 -0.00050186 -0.21008 -0.00011571 550.7735641122075 46.997 0.31131 46.66 46.483 46.794 -0.33664 47 15 4 0 0 0 0.50673 1 25232 25232 34.102 0 1 33624000 + 11577 21285 7904 8074 13388 13388 -0.011939459310497114 FEIYRDNHLF 10 Unmodified _FEIYRDNHLF_ 0 0 0 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 REV__nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.3346557617188 2 677.332944 1352.65134 1.6968 0.0011493 0.71203 0.00048228 2.4089 0.0016316 677.3331583544596 100.91 0.1272 94.734 94.688 94.815 -6.1757 12 7 3 0 0 0 0.40136 1 67612 67612 21.537 4.0943 1 37481000 + 11578 19006 7905 8075 13389 13389 -0.01088413062257132 FEKEETFAL 9 Unmodified _FEKEETFAL_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2764282226562 2 557.276772 1112.53899 0.55604 0.00030987 -0.22254 -0.00012402 0.3335 0.00018585 557.2767079302004 75.061 0.27739 75.061 74.948 75.226 0 33 18 2 0 0 0 0.54444 1 41745 41745 4.756 0.42677 1 935750 11579 6600 7906 8076 13390 13390 -0.012776868590890444 FEKEETFAL 9 Unmodified _FEKEETFAL_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.276772 1112.53899 0.55604 0.00030987 -0.22254 -0.00012402 0.3335 0.00018585 557.2767079302004 75.061 0.27739 75.061 74.948 75.226 0 0 0 NaN 4.756 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 935750 11580 6600 7906 8076 -0.012776868590890444 FEKFDPVSAF 10 Unmodified _FEKFDPVSAF_ 0 0 0 REV__ENSG00000129467|ENST00000418030|ADCY4 REV__ENSG00000129467|ENST00000418030|ADCY4 MSMS AL20221201_MKP_PDAC_01 4 593.7902221679688 2 593.792589 1185.57063 NaN NaN NaN NaN NaN NaN NaN 46.427 1 41.347 40.847 41.847 -5.0805 0 0 0 0.37267 1 28672 28672 38.176 3.7738 1 + 11581 19667 7907 8077 13391 13391 -0.014736941051296526 FEKFGNETFI 10 Unmodified _FEKFGNETFI_ 0 0 0 ENSG00000177706|ENST00000313766|FAM20C;nc|ENSG00000177706|Q8IXL6-2|FAM20C;ENST00000515795.1_7:286228-299943:+|nuORF;ENST00000512382.1_7:296353-297053:+|nuORF ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C MSMS AL20221201_MKP_PDAC_01 4 616.3026733398438 2 616.303321 1230.59209 NaN NaN NaN NaN NaN NaN NaN 59.23 1 53.156 52.656 53.656 -6.0745 0 0 0 0.28083 1 38010 38010 38.176 5.3899 1 11582 8703 7908 8078 13392 13392 -0.01398309076444093 FEKKWTDTF 9 Unmodified _FEKKWTDTF_ 0 0 0 nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2977905273438 2 601.298039 1200.58152 0.6431 0.00038669 1.2291 0.00073905 1.8722 0.0011257 601.2989266611748 79.225 0.25055 78.739 78.619 78.87 -0.48596 16 10 2 0 0 0 0.54444 1 43409 43409 4.756 0.42677 1 387440 11583 3724 7909 8079 13393 13393 -0.010742917308789401 FEKKWTDTF 9 Unmodified _FEKKWTDTF_ 0 0 0 nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B nc|ENSG00000226266|Q9UIF8-4|BAZ2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 601.298039 1200.58152 -0.060074 -3.6122E-05 -0.29666 -0.00017838 -0.35674 -0.00021451 601.8003239457573 78.759 0.13454 78.759 78.716 78.851 0 0.010316 -0.0010766 NaN 4.756 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 198910 11584 3724 7909 8079 -0.010742917308789401 FEKVFSIGP 9 Unmodified _FEKVFSIGP_ 0 0 0 nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1 nc|ENSG00000115866|P14868-2|DARS1 nc|ENSG00000115866|P14868-2|DARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2799682617188 2 512.279118 1022.54368 1.0331 0.00052921 -0.17376 -8.9015E-05 0.85929 0.0004402 512.2789720711002 89.416 0.39597 83.24 83.022 83.418 -6.1757 38 21 2 0 0 0 0.07916 1 58952 58952 37.974 1.847 1 12480000 11585 3171 7910 8080 13394 13394 0.033312420743413895 FEKVTLFNY 9 Unmodified _FEKVTLFNY_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.15966796875 3 387.53773 1159.59136 0.74965 0.00029052 -1.156 -0.00044799 -0.40635 -0.00015748 387.5368498767936 22.687 0.11671 19.909 19.828 19.945 -2.7784 12 8 2 0 0 0 0.21302 1 12177 12177 2.9952 0 1 5672100 + 11586 21060 7911 8081 13395 13395 0.017948962745322206 FEKWNARI 8 Unmodified _FEKWNARI_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2881469726562 2 532.287808 1062.56106 0.40024 0.00021304 -0.59704 -0.0003178 -0.1968 -0.00010475 532.2871115392729 88.761 0.37003 88.257 88.046 88.416 -0.50423 24 15 2 0 0 0 0.80143 1 48587 48587 5.7604 0 1 719460 11587 10851 7912 8082 13396 13396 0.03228582399970037 FEKWVTLTD 9 Unmodified _FEKWVTLTD_ 0 0 0 ENST00000437410.2_1_1:54441353-54441674:-|nuORF ENST00000437410.2_1_1:54441353-54441674:-|nuORF ENST00000437410.2_1_1:54441353-54441674:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7869262695312 2 569.792589 1137.57063 0.54532 0.00031072 -3.6799 -0.0020968 -3.1345 -0.001786 570.2928540602339 53.217 0.56949 52.765 52.496 53.065 -0.45173 90 28 4 0 0 0 0.20428 1 28730 28730 22.736 2.3217 1 6641600 11588 13349 7913 8083 13397 13397 0.0073430589486633835 FELAHSEIF 9 Unmodified _FELAHSEIF_ 0 0 0 REV__nc|ENSG00000276234|O75478|TADA2A REV__nc|ENSG00000276234|O75478|TADA2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.771484375 2 546.771657 1091.52876 NaN NaN NaN NaN NaN NaN NaN 51.811 1 51.378 50.878 51.878 -0.43367 0 0 0 0.15618 1 27957 27957 36.044 7.5574 1 + 11589 24658 7914 8084 13398 13398 -0.013342497936719155 FELARGVLMA 10 Unmodified _FELARGVLMA_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8043212890625 2 553.804977 1105.5954 0.6764 0.00037459 1.5932 0.00088232 2.2696 0.0012569 554.3079802578724 58.635 0.46564 58.574 58.394 58.86 -0.060719 45 23 3 0 0 0 0.35903 1 31980 31980 24.021 1.2843 1 2826900 + 11590 18791 7915 8085 13399 13399 0.046826624965888186 FELEAVCIY 9 Unmodified _FELEAVCIY_ 0 0 0 ENST00000576209.5_1_17:79477139-79477229:-|nuORF ENST00000576209.5_1_17:79477139-79477229:-|nuORF ENST00000576209.5_1_17:79477139-79477229:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7589111328125 2 543.762443 1085.51033 NaN NaN NaN NaN NaN NaN NaN 58.952 1 58.952 58.452 59.452 0 0 0 0 0.6032 1 32833 32833 12.532 2.4576 1 11591 15521 7916 8086 13400 13400 -0.029001277598808883 FELELLHSI 9 Unmodified _FELELLHSI_ 0 0 0 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8724670410156 3 367.53773 1099.59136 0.78521 0.00028859 1.1493 0.00042243 1.9346 0.00071102 367.5382485834468 15.33 0.21877 12.803 12.719 12.938 -2.5273 103 41 3 0 0 0 0.2143 1 7857 7857 15.248 0 1 5354200 11592 4623 7917 8087 13401 13401 0.04554896274544262 FELKPLYRC 9 Unmodified _FELKPLYRC_ 0 0 0 ENSG00000121743|ENST00000241125|GJA3 ENSG00000121743|ENST00000241125|GJA3 ENSG00000121743|ENST00000241125|GJA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2130432128906 3 390.21096 1167.61105 NaN NaN NaN NaN NaN NaN NaN 68.148 1 68.148 67.648 68.648 0 0 0 0 0.85798 1 37995 37995 0.23584 0.028987 1 11593 3596 7918 8088 13402 13402 0.03394949013636506 FELKRRFV 8 Unmodified _FELKRRFV_ 0 0 0 REV__ENST00000557366.5_1_14:68270819-68282710:-|nuORF REV__ENST00000557366.5_1_14:68270819-68282710:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2119140625 3 365.553826 1093.63965 0.12913 4.7205E-05 -2.6341 -0.00096292 -2.505 -0.00091571 365.55293167895087 37.215 0.29881 37.215 36.997 37.296 0 22 14 2 0 0 0 8.7369 1 19754 19754 1.8442 0 1 3017200 + 11594 17508 7919 8089 13403 13403 0.09657434705081869 FELLQTDPF 9 Unmodified _FELLQTDPF_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2776489257812 2 555.279315 1108.54408 0.47287 0.00026257 -0.40191 -0.00022317 0.07096 3.9402E-05 555.278883153693 78.735 0.40144 78.735 78.509 78.911 0 29 18 2 0 0 0 0.58865 1 43702 43702 2.0598 0 1 409930 + 11595 23020 7920 8090 13404 13404 -0.005853829964962642 FELQWMLIHCD 11 Unmodified _FELQWMLIHCD_ 0 0 0 ENSG00000112280|ENST00000357250|COL9A1;nc|ENSG00000112280|P20849-3|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 717.828857421875 2 717.830866 1433.64718 NaN NaN NaN NaN NaN NaN NaN 91.382 1 91.382 90.882 91.882 0 0 0 0 0.94307 1 50538 50538 0.30703 0 1 11596 2876 7921 8091 13405 13405 -0.05229961871827982 FELSMRQSW 9 Unmodified _FELSMRQSW_ 0 0 0 ENST00000510488.1_1_3:141190122-141190284:-|nuORF ENST00000510488.1_1_3:141190122-141190284:-|nuORF ENST00000510488.1_1_3:141190122-141190284:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7835693359375 2 592.281866 1182.54918 0.22943 0.00013589 0.17272 0.0001023 0.40215 0.00023819 592.7831718371348 51.909 0.64111 46.175 45.812 46.453 -5.7345 129 42 4 0 0 0 0.032796 1 32796 32796 53.833 2.203 1 173770000 11597 14591 7922 8092 13406 13406 -0.0347940240551452 FELSNLLANT 10 Unmodified _FELSNLLANT_ 0 0 0 REV__nc|ENSG00000108424|Q14974-2|KPNB1 REV__nc|ENSG00000108424|Q14974-2|KPNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2955322265625 2 561.295496 1120.57644 0.28317 0.00015894 -1.7764 -0.00099706 -1.4932 -0.00083812 561.7955503000119 64.796 0.45863 64.796 64.496 64.955 0 102 22 6 0 0 0 0.44171 1 36010 36010 19.362 1.2156 1 77707000 + 11598 18604 7923 8093 13407 13407 0.020974044065042108 FEMLRGLLPF 10 Unmodified _FEMLRGLLPF_ 0 0 0 REV__ENSG00000178401|ENST00000549441|DNAJC22 REV__ENSG00000178401|ENST00000549441|DNAJC22 MSMS AL20221201_MKP_PDAC_01 4 408.2256164550781 3 408.22661 1221.658 NaN NaN NaN NaN NaN NaN NaN 17.633 1 15.047 14.547 15.547 -2.5866 0 0 0 0.91523 1 9238 9238 3.8763 0 1 + 11599 23042 7924 8094 13408 13408 0.05603808564796964 FENIPNSLAF 10 Unmodified _FENIPNSLAF_ 0 0 0 ENSG00000173068|ENST00000380672|BNC2;nc|ENSG00000173068|Q6ZN30-2|BNC2 ENSG00000173068|ENST00000380672|BNC2 ENSG00000173068|ENST00000380672|BNC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7919311523438 2 576.290214 1150.56587 0.89469 0.0005156 2.5629 0.0014769 3.4575 0.0019925 576.7920698002719 49.615 0.19437 49.223 49.159 49.353 -0.3923 23 9 3 0 0 0 0.043225 1 26706 26706 61.602 12.048 1 3023800 11600 8284 7925 8095 13409 13409 -0.0033857824791994062 FENQKQLNF 9 Unmodified _FENQKQLNF_ 0 0 0 ENST00000425988.1_1_13:23411483-23411888:-|nuORF;ENSG00000151151|ENST00000373935|IPMK ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 584.2927856445312 2 584.293288 1166.57202 NaN NaN NaN NaN NaN NaN NaN 48.303 1 43.069 42.569 43.569 -5.2339 0 0 0 0.36554 1 30076 30076 21.747 6.9084 1 11601 13173 7926 8096 13410 13410 -0.004600600163939816 FENVVFFF 8 Unmodified _FENVVFFF_ 0 0 0 ENST00000442385.5_1_1:16542430-16543645:-|nuORF ENST00000442385.5_1_1:16542430-16543645:-|nuORF ENST00000442385.5_1_1:16542430-16543645:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7598876953125 2 524.760561 1047.50657 0.12188 6.3959E-05 2.5749 0.0013512 2.6967 0.0014151 524.7625817650704 54.2 0.3153 53.733 53.507 53.822 -0.46664 29 15 3 0 0 0 0.5953 1 29390 29390 26.341 5.4701 1 2826800 11602 13409 7927 8097 13411 13411 -0.015284294714319913 FENYSYDLDY 10 Unmodified _FENYSYDLDY_ 0 0 0 ENSG00000183671|ENST00000621141|CMKLR2 ENSG00000183671|ENST00000621141|CMKLR2 ENSG00000183671|ENST00000621141|CMKLR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.5169372558594 3 443.515431 1327.52446 0.66506 0.00029497 1.4287 0.00063363 2.0937 0.0009286 443.516089327601 26.932 0.45724 23.895 23.665 24.122 -3.0365 41 23 2 0 0 0 0.66569 1 14929 14929 3.5871 1.3343 1 16203000 11603 9176 7928 8098 13412 13412 -0.12619803797883833 FEPAAPRTSSL 11 Unmodified _FEPAAPRTSSL_ 0 0 0 REV__ENST00000427590.1_3_3:35732427-35763153:+|nuORF REV__ENST00000427590.1_3_3:35732427-35763153:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3049926757812 2 588.306395 1174.59824 0.50302 0.00029593 -0.8694 -0.00051147 -0.36638 -0.00021554 588.3053647699072 35.386 0.27885 31.291 31.137 31.416 -4.0951 30 16 3 0 0 0 0.10451 1 20502 20502 41.956 0 1 15960000 + 11604 26927 7929 8099 13413 13413 0.01792209155087221 FEPFVHSVDIY 11 Unmodified _FEPFVHSVDIY_ 0 0 0 REV__ENSG00000087903|ENST00000303657|RFX2 REV__ENSG00000087903|ENST00000303657|RFX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3311157226562 2 676.829703 1351.64485 -0.80281 -0.00054336 0.55012 0.00037234 -0.25269 -0.00017103 677.3317169318132 27.753 0.20667 27.753 27.638 27.845 0 16 9 2 0 0 0 0.71341 1 14318 14318 2.9952 0 1 1187100 + 11605 17795 7930 8100 13414 13414 -0.016903510135989563 FEPQGISFLE 10 Unmodified _FEPQGISFLE_ 0 0 0 CON__Q3T052;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4 CON__Q3T052 CON__Q3T052 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7942504882812 2 583.790047 1165.56554 0.85331 0.00049815 1.4835 0.00086606 2.3368 0.0013642 583.7908115535099 80.156 0.94666 79.667 79.257 80.204 -0.48932 64 38 2 0 0 0 0.6785 1 44132 44132 5.2969 0.54088 1 854910 + 11606 203 7931 8101 13415 13415 -0.010619979677585434 FEPVKTET 8 Unmodified _FEPVKTET_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4837646484375 1 950.482939 949.475663 -0.3302 -0.00031385 1.2561 0.0011939 0.92592 0.00088007 950.4839515906507 82.146 0.32896 82.146 81.985 82.314 0 25 15 2 0 0 0 0.80722 1 45639 45639 2.3027 0 1 638950 11607 1487 7932 8102 13416 13416 -0.0010962757631887143 FEQGREHLW 9 Unmodified _FEQGREHLW_ 0 0 0 REV__nc|ENSG00000122884|P13674-3|P4HA1 REV__nc|ENSG00000122884|P13674-3|P4HA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.292724609375 2 601.291079 1200.56761 NaN NaN NaN NaN NaN NaN NaN 21.472 1 21.472 20.972 21.972 0 0 0 0 0.85737 1 10867 10867 0.6015 0 1 + 11608 19362 7933 8103 13417 13417 -0.024655244392988607 FEQLWEIED 9 Unmodified _FEQLWEIED_ 0 0 0 ENST00000337451.7_1_15:23005397-23005541:-|nuORF ENST00000337451.7_1_15:23005397-23005541:-|nuORF ENST00000337451.7_1_15:23005397-23005541:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2597045898438 2 604.777136 1207.53972 -0.91827 -0.00055535 2.6825 0.0016223 1.7643 0.001067 604.7787173751129 27.771 0.2449 27.771 27.659 27.903 0 15 11 2 0 0 0 0.21564 1 14293 14293 3.9444 0.66309 1 1249600 11609 11928 7934 8104 13418 13418 -0.05574892210074722 FEQSLGSVHP 10 Unmodified _FEQSLGSVHP_ 0 0 0 REV__ENSG00000257008|ENST00000582579|GPR142 REV__ENSG00000257008|ENST00000582579|GPR142 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7720336914062 2 550.772188 1099.52982 1.3754 0.00075755 2.1276 0.0011718 3.5031 0.0019294 550.7734618474099 46.726 0.20174 46.692 46.572 46.774 -0.033421 29 9 4 0 0 0 0.10424 1 25126 25126 45.7 3.86 1 11704000 + 11610 24559 7935 8105 13419 13419 -0.015960354247454234 FEQVAEGMGR 10 Unmodified _FEQVAEGMGR_ 0 0 0 REV__nc|ENSG00000020922|P49959-2|MRE11 REV__nc|ENSG00000020922|P49959-2|MRE11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.793212890625 2 562.263673 1122.51279 1.1855 0.00066655 0.48342 0.00027181 1.6689 0.00093836 562.2636529792442 71.629 0.29494 71.668 71.535 71.829 0.039024 23 13 2 0 0 0 0.23558 1 39406 39406 8.1555 0.8663 1 1591500 + 11611 17108 7936 8106 13420 13420 -0.04356279302191979 FERALSSVGLH 11 Unmodified _FERALSSVGLH_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8861083984375 3 405.887533 1214.64077 -0.22082 -8.9627E-05 0.69945 0.0002839 0.47863 0.00019427 405.88787044346964 32.809 0.41459 32.65 32.32 32.735 -0.15918 40 17 3 0 0 0 0.46578 1 17031 17031 10.315 0 1 4013000 11612 1171 7937 8107 13421 13421 0.04203604283338791 FERGRKMEK 9 Unmodified _FERGRKMEK_ 0 0 0 REV__nc|ENSG00000163873|Q13003-2|GRIK3 REV__nc|ENSG00000163873|Q13003-2|GRIK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5487060546875 3 394.213364 1179.61826 -0.29966 -0.00011813 1.4171 0.00055863 1.1174 0.0004405 394.21377067120505 51.489 0.53116 51.435 51.047 51.578 -0.053871 51 26 3 0 0 0 0.5029 1 27792 27792 4.5289 0.94181 1 6565400 + 11613 21827 7938 8108 13422 13422 0.03563681614059533 FERLQLELEIY 11 Unmodified _FERLQLELEIY_ 0 0 0 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 726.8905029296875 2 726.890292 1451.76603 0.28503 0.00020718 0.17194 0.00012498 0.45697 0.00033217 726.8905715438982 82.443 0.58936 76.268 75.932 76.521 -6.1757 66 32 3 0 0 0 0.16515 2 54031 54031;54167 34.932 18.783 1 22832000 + 11614 29539 7939 8109 13423;13424 13423 0.05821851629048069 FERLQYRWSFW 11 Unmodified _FERLQYRWSFW_ 0 0 0 REV__ENSG00000105131|ENST00000221730|EPHX3 REV__ENSG00000105131|ENST00000221730|EPHX3 MSMS AL20221201_MKP_PDAC_01 4 809.4022216796875 2 809.401692 1616.78883 NaN NaN NaN NaN NaN NaN NaN 63.623 1 57.448 56.948 57.948 -6.1757 0 0 0 0.94184 1 41150 41150 1.1933 0.84271 1 + 11615 18401 7940 8110 13425 13425 0.005109155371656016 FERSWVLAVDH 11 Unmodified _FERSWVLAVDH_ 0 0 0 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2405700683594 3 453.566571 1357.67788 0.63423 0.00028766 -0.24229 -0.00010989 0.39194 0.00017777 453.56645439000584 39.141 0.29245 39.141 38.97 39.263 0 21 13 2 0 0 0 0.30445 1 21015 21015 4.4062 2.4998 1 5834500 11616 9266 7941 8111 13426 13426 0.013352758290920974 FERYYRVREAV 11 Unmodified _FERYYRVREAV_ 0 0 0 REV__nc|ENSG00000213199|Q9UHC3-4|ASIC3 REV__nc|ENSG00000213199|Q9UHC3-4|ASIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.5975341796875 3 496.596642 1486.7681 -0.047624 -2.365E-05 0.55241 0.00027433 0.50479 0.00025068 496.5970784335597 37.13 0.27928 37.151 36.984 37.263 0.021545 26 12 3 0 0 0 0.67892 1 19695 19695 6.2344 2.358 1 5422500 + 11617 24278 7942 8112 13427 13427 0.04418325157507752 FESASHNETY 10 Unmodified _FESASHNETY_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7454833984375 2 592.746367 1183.47818 0.94383 0.00055945 -1.5435 -0.00091492 -0.5997 -0.00035547 592.7452986979869 89.416 0.69705 83.24 82.901 83.598 -6.1757 111 38 4 0 0 0 0.67033 1 59032 59032 6.2058 1.8765 1 44462000 11618 8796 7943 8113 13428 13428 -0.10621823909332306 FESCCICKGF 10 Unmodified _FESCCICKGF_ 0 0 0 REV__ENST00000398117.1_1_18:60986791-60986938:-|nuORF REV__ENST00000398117.1_1_18:60986791-60986938:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.733154296875 2 568.732306 1135.45006 0.55561 0.00031599 -0.017885 -1.0172E-05 0.53773 0.00030582 568.7320917104282 60.952 0.33848 60.952 60.811 61.149 0 35 13 3 0 0 0 0.5802 1 34070 34070 13.906 13.906 1 5706600 + 11619 26562 7944 8114 13429 13429 -0.11224884686271253 FESFEYIHI 9 Unmodified _FESFEYIHI_ 0 0 0 ENST00000262056.13_1_12:53434781-53434886:+|nuORF ENST00000262056.13_1_12:53434781-53434886:+|nuORF ENST00000262056.13_1_12:53434781-53434886:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2233581542969 3 395.525602 1183.55498 -0.1475 -5.8341E-05 -1.4049 -0.00055568 -1.5524 -0.00061402 395.5250122784591 33.102 0.21301 33.132 33.019 33.232 0.029743 15 8 2 0 0 0 0.21798 1 17433 17433 1.1933 1.034 1 559000 11620 11258 7945 8115 13430 13430 -0.029459806221893814 FESLQQTALCN 11 Unmodified _FESLQQTALCN_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145668058-145668220:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS AL20221201_MKP_PDAC_01 4 627.294189453125 2 627.29517 1252.57579 NaN NaN NaN NaN NaN NaN NaN 89.556 1 83.38 82.88 83.88 -6.1757 0 0 0 0.81193 1 59123 59123 11.495 0 1 11621 6769 7946 8116 13431 13431 -0.0403975830483887 FESLTSSCNV 10 Unmodified _FESLTSSCNV_ 0 0 0 ENST00000590513.2_1_17:40704842-40705703:-|nuORF ENST00000590513.2_1_17:40704842-40705703:-|nuORF ENST00000590513.2_1_17:40704842-40705703:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.806884765625 2 543.742239 1085.46993 0.33002 0.00017945 -2.1206 -0.001153 -1.7905 -0.00097359 543.7409008602525 39.331 0.18567 39.331 39.177 39.362 0 11 8 2 0 0 0 0.23057 1 21001 21001 8.7454 0 1 936650 11622 15685 7947 8117 13432 13432 -0.06939094150311576 FESQILYFQ 9 Unmodified _FESQILYFQ_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3218994140625 2 587.792589 1173.57063 1.4476 0.00085087 0.70631 0.00041517 2.1539 0.001266 588.2937899139401 46.786 0.14046 46.753 46.693 46.834 -0.033421 10 6 2 0 0 0 0.209 1 25183 25183 7.2892 0.56607 1 1206300 11623 641 7948 8118 13433 13433 -0.009216941051363392 FESQQLLA 8 Unmodified _FESQQLLA_ 0 0 0 REV__nc|ENSG00000188649|Q6DHV5-1|CC2D2B REV__nc|ENSG00000188649|Q6DHV5-1|CC2D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.4830932617188 1 935.483273 934.475997 0.40572 0.00037954 0.82423 0.00077105 1.2299 0.0011506 935.4836347653674 66.404 0.31662 66.404 66.195 66.512 0 18 13 2 0 0 0 0.58902 1 37001 37001 26.884 1.4843 1 644420 + 11624 29865 7949 8119 13434 13434 0.006137921435197313 FESSEGVFLF 10 Unmodified _FESSEGVFLF_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2770385742188 2 581.276772 1160.53899 0.49548 0.00028801 0.11482 6.6745E-05 0.61031 0.00035476 581.276786070553 84.126 0.33382 83.627 83.463 83.797 -0.49961 37 14 3 0 0 0 0.69385 1 46091 46091 6.7232 1.4925 1 1834500 11625 8120 7950 8120 13435 13435 -0.034856868590850354 FETCDCWSPF 10 Unmodified _FETCDCWSPF_ 0 0 0 REV__ENST00000540840.1_1_4:110925762-110933368:+|nuORF REV__ENST00000540840.1_1_4:110925762-110933368:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8254699707031 3 412.156304 1233.44708 0.58725 0.00024204 3.1448 0.0012961 3.732 0.0015382 412.4915126459052 64.077 0.25956 63.592 63.458 63.718 -0.48512 29 12 4 0 0 0 0.24007 1 34924 34924 0.69767 0.23933 1 1548500 + 11626 28587 7951 8121 13436 13436 -0.1603043653944951 FETESYSVPQ 10 Unmodified _FETESYSVPQ_ 0 0 0 ENST00000372876.1_1_6:42712424-42712766:-|nuORF ENST00000372876.1_1_6:42712424-42712766:-|nuORF ENST00000372876.1_1_6:42712424-42712766:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1802368164062 3 396.180271 1185.51898 -0.51316 -0.0002033 0.21841 8.653E-05 -0.29475 -0.00011677 396.1802782068377 19.629 0.6334 19.629 19.326 19.959 0 112 80 2 0 0 0 0.69126 1 9879 9879 3.8763 0.28927 1 1158000 11627 12396 7952 8122 13437 13437 -0.06635482589717867 FETFEAKI 8 Unmodified _FETFEAKI_ 0 0 0 ENST00000381168.7_1_11:2187868-2190906:-|nuORF;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH ENST00000381168.7_1_11:2187868-2190906:-|nuORF ENST00000381168.7_1_11:2187868-2190906:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7554321289062 2 492.755475 983.496398 NaN NaN NaN NaN NaN NaN NaN 94.935 1 94.567 94.067 95.067 -0.36814 0 0 0 0.97444 1 51859 51859 2.5775 0 1 11628 8886 7953 8123 13438 13438 0.003989628033195913 FETFHLEFHY 10 Unmodified _FETFHLEFHY_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2108764648438 3 457.211906 1368.61389 -0.073276 -3.3503E-05 -0.73073 -0.0003341 -0.80401 -0.0003676 457.2113306418374 26.241 0.20282 26.241 26.162 26.364 0 23 11 3 0 0 0 0.70895 1 13489 13489 1.9064 1.2087 1 1630000 11629 2505 7954 8124 13439 13439 -0.055675043278597514 FETGADIMY 9 Unmodified _FETGADIMY_ 0 0 0 REV__nc|ENSG00000097033|Q9Y371-2|SH3GLB1 REV__nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2630004882812 2 523.7286 1045.44265 0.37655 0.00019721 -3.5891 -0.0018797 -3.2126 -0.0016825 523.7268749366099 64.992 0.31819 64.992 64.901 65.219 0 22 14 2 0 0 0 0.16785 1 36297 36297 23.148 8.5667 1 1045900 + 11630 17965 7955 8125 13440 13440 -0.07825577690709906 FETNTVLL 8 Unmodified _FETNTVLL_ 0 0 0 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 ENSG00000131459|ENST00000253778|GFPT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5046997070312 1 936.503674 935.496398 0.13202 0.00012364 0.85855 0.00080404 0.99057 0.00092768 936.5042259399324 76.318 0.22509 75.839 75.684 75.909 -0.47945 14 8 2 0 0 0 0.75262 1 41743 41743 12.532 0.89125 1 670930 11631 4326 7956 8126 13441 13441 0.026069628033383196 FETRKRFF 8 Unmodified _FETRKRFF_ 0 0 0 REV__ENST00000323213.9_2_11:32605433-32608524:+|nuORF REV__ENST00000323213.9_2_11:32605433-32608524:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5420227050781 3 377.541697 1129.60326 0.68297 0.00025785 0.43506 0.00016425 1.118 0.0004221 377.54185103584297 23.666 0.45934 20.839 20.613 21.073 -2.8273 57 27 3 0 0 0 0.74687 2 12791 12791;12909 13.042 3.4436 1 4069600 + 11632 25526 7957 8127 13442;13443 13442 0.043645578083669534 FETWKWRF 8 Unmodified _FETWKWRF_ 0 0 0 nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.301025390625 2 600.303458 1198.59236 NaN NaN NaN NaN NaN NaN NaN 51.797 1 51.797 51.297 52.297 0 0 0 0 0.97444 1 28630 28630 2.5775 0.27475 1 11633 3611 7958 8128 13444 13444 0.001011554340720977 FEVAGVYT 8 Unmodified _FEVAGVYT_ 0 0 0 ENSG00000149596|ENST00000372980|JPH2;nc|ENSG00000149596|Q9BR39-2|JPH2 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4390869140625 1 885.435261 884.427984 -0.45176 -0.00040001 0.33391 0.00029565 -0.11786 -0.00010435 885.4354806523992 41.503 0.28265 41.503 41.385 41.668 0 31 14 3 0 0 0 0.40035 1 22349 22349 44.407 6.2558 1 21145000 11634 6024 7959 8129 13445 13445 -0.018852817765264263 FEVAGVYT 8 Unmodified _FEVAGVYT_ 0 0 0 ENSG00000149596|ENST00000372980|JPH2;nc|ENSG00000149596|Q9BR39-2|JPH2 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.221435546875 2 443.221268 884.427984 NaN NaN NaN NaN NaN NaN NaN 41.504 1 41.504 41.004 42.004 0 0 0 0 0.33381 1 22392 22392 60.39 10.721 1 11635 6024 7959 8129 13446 13446 -0.018852817765264263 FEVAGVYT 8 Unmodified _FEVAGVYT_ 0 0 0 ENSG00000149596|ENST00000372980|JPH2;nc|ENSG00000149596|Q9BR39-2|JPH2 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 885.43212890625 1 885.435261 884.427984 -0.062611 -5.5438E-05 0.13543 0.00011991 0.072816 6.4474E-05 885.4348331097545 46.792 0.31479 41.712 41.571 41.886 -5.0805 73 56 2 0 0 0 0.17035 2 28897 28897;29026 81.864 11.149 1 27837000 11636 6024 7959 8129 13447;13448 13447 -0.018852817765264263 FEVCNQQARF 10 Unmodified _FEVCNQQARF_ 0 0 0 REV__ENSG00000085871|ENST00000265498|MGST2 REV__ENSG00000085871|ENST00000265498|MGST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.292236328125 2 621.290222 1240.56589 0.31548 0.000196 0.31968 0.00019862 0.63516 0.00039462 621.2902169827913 79.663 0.29741 79.663 79.5 79.797 0 16 12 2 0 0 0 0.6966 1 44237 44237 3.2813 0.97858 1 416590 + 11637 17758 7960 8130 13449 13449 -0.04476901519569765 FEVKDPCFTI 10 Unmodified _FEVKDPCFTI_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MSMS AL20221201_MKP_PDAC_01 4 599.791259765625 2 599.794275 1197.574 NaN NaN NaN NaN NaN NaN NaN 62.284 1 56.108 55.608 56.608 -6.1757 0 0 0 0.19159 1 40178 40178 43.772 3.8227 1 + 11638 19788 7961 8131 13450 13450 -0.01688767322775675 FEVLAKEAQL 10 Unmodified _FEVLAKEAQL_ 0 0 0 REV__ENSG00000130227|ENST00000252512|XPO7 REV__ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2174987792969 3 383.216768 1146.62847 0.63762 0.00024435 -3.3071 -0.0012673 -2.6695 -0.001023 383.2169292393955 24.722 0.25912 21.839 21.686 21.945 -2.8831 31 14 3 0 0 0 0.56348 1 13454 13454 7.9454 0.90831 1 4452500 + 11639 19707 7962 8132 13451 13451 0.061025678202895506 FEVPAPVA 8 Unmodified _FEVPAPVA_ 0 0 0 REV__ENST00000603798.5_1_12:51640581-51664197:-|nuORF REV__ENST00000603798.5_1_12:51640581-51664197:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.447509765625 1 829.445431 828.438155 -0.23203 -0.00019245 0.48629 0.00040335 0.25427 0.0002109 829.4458560798013 65.312 0.77406 64.828 64.448 65.222 -0.48428 64 35 2 0 0 0 0.65867 1 35508 35508 20.871 3.7847 1 3078300 + 11640 29277 7963 8133 13452 13452 0.017073259487119685 FEVPEGVTHL 10 Unmodified _FEVPEGVTHL_ 0 0 0 REV__ENSG00000143061|ENST00000369486|IGSF3 REV__ENSG00000143061|ENST00000369486|IGSF3 MSMS AL20221201_MKP_PDAC_01 4 376.53076171875 3 376.529235 1126.56587 NaN NaN NaN NaN NaN NaN NaN 19.55 1 16.894 16.394 17.394 -2.6564 0 0 0 0.92825 1 10366 10366 6.1918 0.89496 1 + 11641 20601 7964 8134 13453 13453 0.007654217521121609 FEVPGTGP 8 Unmodified _FEVPGTGP_ 0 0 0 REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3939819335938 1 803.393396 802.386119 -0.0051079 -4.1036E-06 0.5711 0.00045882 0.56599 0.00045471 803.3937435492458 91.134 0.40459 91.134 90.906 91.31 0 51 22 3 0 0 0 0.67481 1 50428 50428 19.439 0 1 5078600 + 11642 18925 7965 8135 13454 13454 -0.022978374650278965 FEVPGTGP 8 Unmodified _FEVPGTGP_ 0 0 0 REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.3927612304688 1 803.393396 802.386119 0.045922 3.6894E-05 -0.059828 -4.8065E-05 -0.013905 -1.1171E-05 803.3931894426023 91.646 0.38927 91.165 90.962 91.351 -0.48092 69 25 3 0 0 0 0.61462 2 50120 50021;50120 24.674 4.6271 1 8356700 + 11643 18925 7965 8135 13455;13456 13456 -0.022978374650278965 FEVPGTGP 8 Unmodified _FEVPGTGP_ 0 0 0 REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.3935546875 1 803.393396 802.386119 0.64346 0.00051695 -0.050786 -4.0801E-05 0.59267 0.00047615 803.3932034296815 99.746 0.17809 93.57 93.474 93.652 -6.1757 28 11 3 0 0 0 0.46494 1 66468 66468 38.151 13.477 1 156990000 + 11644 18925 7965 8135 13457 13457 -0.022978374650278965 FEVPGTGP 8 Unmodified _FEVPGTGP_ 0 0 0 REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 803.393396 802.386119 -0.0051079 -4.1036E-06 0.5711 0.00045882 0.56599 0.00045471 803.3937435492458 91.134 0.40459 91.134 90.906 91.31 0 -0.015637 0.00024797 NaN 24.674 51 22 3 NaN NaN NaN NaN 0 NaN NaN 0 5078600 + 11645 18925 7965 8135 -0.022978374650278965 FEVPGTGP 8 Unmodified _FEVPGTGP_ 0 0 0 REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF REV__ENST00000420588.5_1_3:47476443-47484489:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 803.393396 802.386119 0.045922 3.6894E-05 -0.059828 -4.8065E-05 -0.013905 -1.1171E-05 803.3931894426023 91.646 0.38927 91.165 90.962 91.351 -0.48092 0.015637 -0.00025891 NaN 24.674 69 25 3 NaN NaN NaN NaN 0 NaN NaN 0 8356700 + 11646 18925 7965 8135 -0.022978374650278965 FEVPKPEVI 9 Unmodified _FEVPKPEVI_ 0 0 0 ENSG00000197779|ENST00000338637|ZNF81 ENSG00000197779|ENST00000338637|ZNF81 ENSG00000197779|ENST00000338637|ZNF81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3002319335938 2 529.30005 1056.58555 0.25043 0.00013255 -0.85641 -0.0004533 -0.60598 -0.00032074 529.2996190829766 100.86 0.083649 100.73 100.66 100.74 -0.13293 6 2 3 0 0 0 0.55775 1 55058 55058 3.9444 0.3479 1 866060 11647 10004 7966 8136 13458 13458 0.059517977628502194 FEVPPSGALH 10 Unmodified _FEVPPSGALH_ 0 0 0 ENST00000495485.1_1_5:141008849-141009498:-|nuORF ENST00000495485.1_1_5:141008849-141009498:-|nuORF ENST00000495485.1_1_5:141008849-141009498:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2723999023438 2 527.271824 1052.5291 1.1824 0.00062346 -3.4169 -0.0018017 -2.2345 -0.0011782 527.270488339334 64.656 0.31913 58.481 58.396 58.715 -6.1757 26 17 2 0 0 0 0.52888 1 41933 41933 14.838 1.3304 1 10960000 11648 14354 7967 8137 13459 13459 0.0049316992619878874 FEVPPSGALH 10 Unmodified _FEVPPSGALH_ 0 0 0 ENST00000495485.1_1_5:141008849-141009498:-|nuORF ENST00000495485.1_1_5:141008849-141009498:-|nuORF ENST00000495485.1_1_5:141008849-141009498:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.271824 1052.5291 0.50809 0.0002679 -2.0591 -0.0010857 -1.551 -0.0008178 527.2711191292024 58.395 0.32814 58.395 58.206 58.535 0 -0.042671 0.00073805 NaN 14.838 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1436700 11649 14354 7967 8137 0.0049316992619878874 FEVSVCSL 8 Unmodified _FEVSVCSL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 CON__ENSEMBL:ENSBTAP00000037665 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 883.4199829101562 1 883.422981 882.415705 -0.75996 -0.00067136 -2.7912 -0.0024658 -3.5511 -0.0031372 883.4199968683606 55.556 0.15873 55.556 55.414 55.573 0 11 6 2 0 0 0 0.26159 1 30833 30833 60.39 6.814 1 808240 + 11650 149 7968 8138 13460 13460 -0.03020641511204758 FEVVCNMIPF 10 Unmodified _FEVVCNMIPF_ 0 0 0 ENSG00000188991|ENST00000344941|SLC15A5 ENSG00000188991|ENST00000344941|SLC15A5 ENSG00000188991|ENST00000344941|SLC15A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.785888671875 2 599.785395 1197.55624 -0.041873 -2.5115E-05 0.65525 0.00039301 0.61338 0.00036789 599.785801587799 63.99 0.45392 63.99 63.801 64.255 0 46 18 4 0 0 0 0.54684 1 35761 35761 13.906 0 1 8996900 11651 9714 7969 8139 13461 13461 -0.034638058492873824 FEWEIGEKKY 10 Unmodified _FEWEIGEKKY_ 0 0 0 REV__ENSG00000006788|ENST00000252172|MYH13 REV__ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3348388671875 2 664.829703 1327.64485 -0.89502 -0.00059503 0.45079 0.0002997 -0.44422 -0.00029533 664.8300442756873 30.292 0.24229 30.292 30.16 30.402 0 37 11 4 0 0 0 0.46514 1 15695 15695 18.146 1.0335 1 10663000 + 11652 16999 7970 8140 13462 13462 -0.005863510136350669 FEYEVSVETF 10 Unmodified _FEYEVSVETF_ 0 0 0 REV__ENSG00000187764|ENST00000422704|SEMA4D REV__ENSG00000187764|ENST00000422704|SEMA4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.2835083007812 2 625.284794 1248.55504 0.57127 0.00035721 3.6452 0.0022793 4.2165 0.0026365 625.2867265259976 38.562 0.57566 38.562 38.414 38.99 0 68 27 4 0 0 0 0.44373 1 20798 20798 19.257 4.4187 1 13356000 + 11653 23658 7971 8141 13463 13463 -0.059300254128629604 FEYFLLIL 8 Unmodified _FEYFLLIL_ 0 0 0 ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3018188476562 2 529.302062 1056.58957 0.43926 0.0002325 -0.77206 -0.00040865 -0.3328 -0.00017615 529.3017132302824 83.873 0.33469 83.374 83.172 83.507 -0.49961 33 13 3 0 0 0 0.75262 1 45962 45962 12.532 3.9383 1 1640200 11654 8978 7972 8142 13464 13464 0.06353887256568669 FEYHFFLH 8 Unmodified _FEYHFFLH_ 0 0 0 REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.269775390625 2 570.269084 1138.52362 NaN NaN NaN NaN NaN NaN NaN 75.322 1 75.322 74.822 75.822 0 0 0 0 0.97444 1 41901 41901 0.69038 0 1 + 11655 21558 7973 8143 13465 13465 -0.04010508865621887 FEYPGLVHH 9 Unmodified _FEYPGLVHH_ 0 0 0 ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000224109|ENST00000417339|CENPVL3 ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000223591|ENST00000602548|CENPVL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7730102539062 2 549.771991 1097.52943 0.47959 0.00026367 0.3661 0.00020127 0.84569 0.00046494 549.7722068747086 49.222 0.35416 49.178 48.982 49.336 -0.04369 42 16 4 0 0 0 0.045537 1 26556 26556 46.921 22.9 1 6045400 11656 10572 7974 8144 13466 13466 -0.015434103539519128 FEYPGLVHH 9 Unmodified _FEYPGLVHH_ 0 0 0 ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000283093|ENST00000634648|CENPVL2;ENSG00000224109|ENST00000417339|CENPVL3 ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000223591|ENST00000602548|CENPVL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.771991 1097.52943 0.74511 0.00040964 -1.9048 -0.0010472 -1.1597 -0.00063756 549.7722804707915 49.537 0.23637 49.145 49.022 49.258 -0.3923 -0.016625 -0.002331 NaN 46.921 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1684000 11657 10572 7974 8144 -0.015434103539519128 FEYTANPAGY 10 Unmodified _FEYTANPAGY_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7484741210938 2 566.750921 1131.48729 0.31115 0.00017634 -1.4188 -0.00080411 -1.1077 -0.00062777 566.7493989694738 82.563 0.26373 82.563 82.41 82.673 0 16 10 2 0 0 0 0.6966 1 45789 45789 3.2813 0.39209 1 416070 11658 1584 7975 8145 13467 13467 -0.07319430553002348 FFAGHTHDGGY 11 Unmodified _FFAGHTHDGGY_ 0 0 0 ENSG00000170222|ENST00000379774|ADPRM ENSG00000170222|ENST00000379774|ADPRM ENSG00000170222|ENST00000379774|ADPRM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5092468261719 3 403.508834 1207.50467 0.73651 0.00029719 1.0254 0.00041376 1.7619 0.00071095 403.50910532080536 74.373 0.35078 73.897 73.714 74.065 -0.47588 25 14 2 0 0 0 0.72952 1 40713 40713 0.50596 0 1 1070100 11659 7960 7976 8146 13468 13468 -0.09078090227330904 FFANWGDVM 9 Unmodified _FFANWGDVM_ 0 0 0 REV__ENSG00000134744|ENST00000257177|TUT4 REV__ENSG00000134744|ENST00000257177|TUT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7394409179688 2 543.739302 1085.46405 1.2127 0.0006594 -1.0043 -0.00054607 0.20842 0.00011333 543.7390705940717 34.051 0.47264 30.065 29.765 30.238 -3.9853 82 25 4 0 0 0 0.05447 2 19476 19476;19596 43.858 4.6064 1 58738000 + 11660 20004 7977 8147 13469;13470 13469 -0.07526147871317335 FFASMISTF 9 Unmodified _FFASMISTF_ 0 0 0 nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.751220703125 2 525.751879 1049.4892 NaN NaN NaN NaN NaN NaN NaN 100.48 1 100.44 99.936 100.94 -0.041458 0 0 0 0.82739 1 55815 55815 4.3292 0 1 11661 2118 7978 8148 13471 13471 -0.033560930687599466 FFCLEKYLGG 10 Unmodified _FFCLEKYLGG_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13;nc|ENSG00000179869|Q86UQ4-6|ABCA13;nc|ENSG00000179869|Q86UQ4-7|ABCA13;nc|ENSG00000179869|Q86UQ4-5|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MSMS AL20221201_MKP_PDAC_01 4 588.7927856445312 2 588.791535 1175.56852 NaN NaN NaN NaN NaN NaN NaN 49.184 1 43.788 43.288 44.288 -5.3961 0 0 0 0.45397 1 30710 30710 28.495 3.5035 1 11662 8860 7979 8149 13472 13472 -0.012244461146110552 FFCLLFFCLE 10 Unmodified _FFCLLFFCLE_ 0 0 0 REV__ENST00000216225.8_1_22:41368518-41368620:+|nuORF REV__ENST00000216225.8_1_22:41368518-41368620:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8740844726562 3 427.873068 1280.59737 NaN NaN NaN NaN NaN NaN NaN 21.449 1 21.449 20.949 21.949 0 0 0 0 1.0019 1 10854 10854 0.15932 0.01943 1 + 11663 24735 7980 8150 13473 13473 -0.031700448097808476 FFDALDHVI 9 Unmodified _FFDALDHVI_ 0 0 0 ENSG00000159069|ENST00000325285|FBXW5;ENST00000459905.5_1_9:139835382-139837220:-|nuORF;ENST00000483559.5_1_9:139835382-139837095:-|nuORF ENSG00000159069|ENST00000325285|FBXW5 ENSG00000159069|ENST00000325285|FBXW5 MSMS AL20221201_MKP_PDAC_01 4 538.7763671875 2 538.7742 1075.53385 NaN NaN NaN NaN NaN NaN NaN 97.088 1 90.913 90.413 91.413 -6.1757 0 0 0 0.098496 1 64344 64344 57.471 35.725 1 11664 6623 7981 8151 13474 13474 -0.0008994593106308457 FFDAQEVLL 9 Unmodified _FFDAQEVLL_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2822265625 2 541.281857 1080.54916 0.23103 0.00012505 0.64239 0.00034771 0.87341 0.00047276 541.2821754163722 88.008 0.42696 88.008 87.811 88.238 0 74 23 4 0 0 0 0.098164 2 48765 48669;48765 43.858 26.772 1 3330100 11665 1043;16055 7982 8152 13475;13476 13476 0.012109208661513549 FFDAQEVLL 9 Unmodified _FFDAQEVLL_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2826538085938 2 541.281857 1080.54916 0.28369 0.00015355 0.86534 0.00046839 1.149 0.00062195 541.2822802066707 88.538 0.47369 88.034 87.825 88.298 -0.50423 63 20 4 0 0 0 0.069655 2 48449 48350;48449 43.858 26.772 1 8607300 11666 1043;16055 7982 8152 13477;13478 13478 0.012109208661513549 FFDAQEVLL 9 Unmodified _FFDAQEVLL_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1081.561401367188 1 1081.55644 1080.54916 0.33001 0.00035692 1.1692 0.0012646 1.4992 0.0016215 1081.5579768367115 88.56 0.1787 88.056 87.934 88.112 -0.50423 13 7 2 0 0 0 0.24903 1 48419 48419 26.268 15.154 1 602690 11667 1043;16055 7982 8152 13479 13479 0.012109208661513549 FFDAQEVLL 9 Unmodified _FFDAQEVLL_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2822875976562 2 541.281857 1080.54916 0.010723 5.8044E-06 1.9564 0.001059 1.9671 0.0010648 541.2831573900908 87.939 0.097473 87.992 87.95 88.048 0.053352 5 3 2 0 0 0 0.098164 1 48932 48932 43.858 22.112 1 5500400 11668 1043;16055 7982 8152 13480 13480 0.012109208661513549 FFDAQEVLL 9 Unmodified _FFDAQEVLL_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2828979492188 2 541.281857 1080.54916 0.026773 1.4492E-05 0.77402 0.00041896 0.80079 0.00043346 541.2824441722461 98.942 0.57601 92.766 92.414 92.99 -6.1757 72 40 2 0 0 0 0.069655 2 65549 65549;65730 52.268 25.385 1 84708000 11669 1043;16055 7982 8152 13481;13482 13481 0.012109208661513549 FFDATDRVSF 10 Unmodified _FFDATDRVSF_ 0 0 0 nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.782958984375 2 602.785296 1203.55604 0.058046 3.4989E-05 1.0942 0.00065957 1.1523 0.00069456 602.7853893767889 61.599 0.40141 61.112 60.924 61.325 -0.48764 69 18 6 0 0 0 0.048223 2 33505 33505;33610 67.081 47.824 1 14555000 11670 16009 7983 8153 13483;13484 13483 -0.037597662533016774 FFDATDRVSF 10 Unmodified _FFDATDRVSF_ 0 0 0 nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.7867431640625 2 602.785296 1203.55604 0.17713 0.00010677 0.04366 2.6318E-05 0.22079 0.00013309 602.7853376818769 61.188 0.27486 61.145 61.008 61.282 -0.043507 30 13 3 0 0 0 0.075273 1 33374 33374 59.052 31.424 1 12821000 11671 16009 7983 8153 13485 13485 -0.037597662533016774 FFDATDRVSF 10 Unmodified _FFDATDRVSF_ 0 0 0 nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.78515625 2 602.785296 1203.55604 0.051243 3.0888E-05 -0.089332 -5.3848E-05 -0.038089 -2.296E-05 602.7851188196053 68.086 0.51492 61.91 61.673 62.187 -6.1757 68 30 3 0 0 0 0.0041527 2 44471 44343;44471 104.48 70.083 1 40905000 11672 16009 7983 8153 13486;13487 13487 -0.037597662533016774 FFDATDRVSF 10 Unmodified _FFDATDRVSF_ 0 0 0 nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX nc|ENSG00000005889|P17010-3|ZFX MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7860107421875 2 602.785296 1203.55604 0.29566 0.00017822 0.16744 0.00010093 0.4631 0.00027915 602.7854966538018 68.654 0.50011 62.479 62.205 62.705 -6.1757 42 28 2 0 0 0 0.0032957 1 44808 44808 97.741 52.041 1 23114000 11673 16009 7983 8153 13488 13488 -0.037597662533016774 FFDDRSSAL 9 Unmodified _FFDDRSSAL_ 0 0 0 REV__ENSG00000161682|ENST00000293443|FAM171A2 REV__ENSG00000161682|ENST00000293443|FAM171A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2504272460938 2 529.251089 1056.48762 0.48933 0.00025898 -0.84684 -0.00044819 -0.35751 -0.00018921 529.250330572396 61.267 0.4523 61.267 61.024 61.476 0 41 18 3 0 0 0 0.48152 1 34153 34153 8.5933 0 1 2028400 + 11674 21606 7984 8154 13489 13489 -0.03836010833151704 FFDDVGAVTL 10 Unmodified _FFDDVGAVTL_ 0 0 0 ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.27001953125 2 542.27149 1082.52843 0.46707 0.00025328 0.96006 0.00052062 1.4271 0.0007739 542.2722642048038 82.038 0.55253 81.543 81.342 81.895 -0.4952 40 20 3 0 0 0 0.33553 1 44891 44891 25.399 9.5521 1 2010100 11675 4776 7985 8155 13490 13490 -0.009536695135011541 FFDEMQEL 8 Unmodified _FFDEMQEL_ 0 0 0 REV__ENSG00000169136|ENST00000423777|ATF5 REV__ENSG00000169136|ENST00000423777|ATF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2504272460938 2 529.7286 1057.44265 0.46934 0.00024862 -2.7255 -0.0014438 -2.2562 -0.0011952 529.7270708617018 61.389 0.57338 61.389 61.024 61.597 0 38 25 2 0 0 0 8.7369 1 34153 34153 10.183 0 1 911900 + 11676 22379 7986 8156 13491 13491 -0.08377577690680482 FFDEVVKQM 9 Unmodified _FFDEVVKQM_ 0 0 0 nc|ENSG00000115520|Q9H8M1-2|COQ10B;ENSG00000115520|ENST00000263960|COQ10B nc|ENSG00000115520|Q9H8M1-2|COQ10B nc|ENSG00000115520|Q9H8M1-2|COQ10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7811889648438 2 571.781167 1141.54778 0.46771 0.00026743 -3.7346 -0.0021354 -3.2669 -0.001868 571.781283726948 59.272 0.21429 58.781 58.707 58.921 -0.49079 16 9 2 0 0 0 0.34999 1 32273 32273 14.838 9.0778 1 1076300 11677 3131 7987 8157 13492 13492 -0.017330364942608867 FFDHCPDVTPD 11 Unmodified _FFDHCPDVTPD_ 0 0 0 REV__nc|ENSG00000117298|P42892-3|ECE1 REV__nc|ENSG00000117298|P42892-3|ECE1 MSMS AL20221201_MKP_PDAC_01 4 431.5154418945312 3 431.513256 1291.51794 NaN NaN NaN NaN NaN NaN NaN 63.865 1 57.689 57.189 58.189 -6.1757 0 0 0 0.93933 1 41327 41327 1.2148 0.10508 1 + 11678 19096 7988 8158 13493 13493 -0.11616020230258073 FFDHSGTLV 9 Unmodified _FFDHSGTLV_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7506713867188 2 511.750724 1021.4869 0.39748 0.00020341 1.2347 0.00063186 1.6322 0.00083527 511.7510923709549 52.154 0.32162 51.72 51.569 51.891 -0.43367 33 15 3 0 0 0 0.023164 1 28164 28164 60.39 24.345 1 3309500 11679 3366 7989 8159 13494 13494 -0.02298805482178068 FFDHSGTLV 9 Unmodified _FFDHSGTLV_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MSMS AL20221201_MKP_PDAC_01 4 511.7522277832031 2 511.750724 1021.4869 NaN NaN NaN NaN NaN NaN NaN 59.109 1 53.035 52.535 53.535 -6.0745 0 0 0 0.17247 1 37919 37919 34.102 12.356 1 11680 3366 7989 8159 13495 13495 -0.02298805482178068 FFDLRRVYR 9 Unmodified _FFDLRRVYR_ 0 0 0 REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 REV__nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5721740722656 3 424.571768 1270.69348 0.23096 9.8058E-05 -0.10202 -4.3314E-05 0.12894 5.4744E-05 424.5717299194081 43.871 0.28412 43.856 43.718 44.002 -0.015667 40 14 4 0 0 0 0.34999 2 23581 23478;23581 19.362 7.1213 1 267130000 + 11681 19919 7990 8160 13496;13497 13497 0.06895607136789295 FFDNISSEL 9 Unmodified _FFDNISSEL_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2544555664062 2 536.253297 1070.49204 0.59638 0.00031981 0.71542 0.00038365 1.3118 0.00070346 536.2535990224111 73.974 0.68491 73.974 73.503 74.188 0 73 30 5 0 0 0 0.070838 2 41106 41106;41208 39.957 18.211 1 18691000 11682 6031 7991 8161 13498;13499 13498 -0.04038546410242816 FFDNISSEL 9 Unmodified _FFDNISSEL_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1071.909301757812 1 1071.49932 1070.49204 0.58761 0.00062962 -0.40999 -0.0004393 0.17762 0.00019032 1071.4987587006535 74.462 0.36443 73.986 73.817 74.182 -0.47588 44 15 4 0 0 0 0.07916 1 40688 40688 37.974 13.953 1 8166000 11683 6031 7991 8161 13500 13500 -0.04038546410242816 FFDNISSEL 9 Unmodified _FFDNISSEL_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.25341796875 2 536.253297 1070.49204 0.63585 0.00034098 -1.0351 -0.00055506 -0.39922 -0.00021408 536.2527183380917 74.462 0.82 73.986 73.741 74.561 -0.47588 113 34 5 0 0 0 0.047196 2 40698 40698;40805 46.021 21.822 1 47754000 11684 6031 7991 8161 13501;13502 13501 -0.04038546410242816 FFDNISSEL 9 Unmodified _FFDNISSEL_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.25341796875 2 536.253297 1070.49204 0.31493 0.00016888 0.47004 0.00025206 0.78497 0.00042094 536.2534445273185 73.961 0.29551 74.005 73.864 74.159 0.043983 36 13 4 0 0 0 0.23158 2 40735 40735;40841 20.454 5.6154 1 6379800 11685 6031 7991 8161 13503;13504 13503 -0.04038546410242816 FFDNISSEL 9 Unmodified _FFDNISSEL_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2535400390625 2 536.253297 1070.49204 0.67994 0.00036462 -0.078038 -4.1848E-05 0.6019 0.00032277 536.2532400425384 82.915 0.75668 76.74 76.39 77.146 -6.1757 127 42 4 0 0 0 0.10734 2 54537 54406;54537 32.305 9.1571 1 277190000 11686 6031 7991 8161 13505;13506 13506 -0.04038546410242816 FFDNRPGKL 9 Unmodified _FFDNRPGKL_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1983032226562 3 365.197819 1092.57163 1.3232 0.00048322 -0.25259 -9.2245E-05 1.0706 0.00039097 365.1976925287416 39.6 0.42183 35.149 34.964 35.385 -4.4509 44 26 2 0 0 0 0.05447 1 23482 23482 33.445 5.8161 1 45682000 11687 2782 7992 8162 13507 13507 0.029045650544276214 FFDPHQSTF 9 Unmodified _FFDPHQSTF_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.254638671875 2 563.253631 1124.49271 0.73381 0.00041332 0.85806 0.00048331 1.5919 0.00089663 563.2542516190935 49.287 0.30853 48.915 48.734 49.043 -0.37172 43 14 4 0 0 0 0.014417 2 26448 26448;26551 69.105 27.265 1 16365000 11688 9912 7993 8163 13508;13509 13508 -0.06455706970518804 FFDPHQSTF 9 Unmodified _FFDPHQSTF_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2543334960938 2 563.253631 1124.49271 1.2343 0.00069524 -0.97206 -0.00054752 0.26226 0.00014772 563.2535544833268 55.578 0.43429 49.657 49.444 49.878 -5.9211 40 25 2 0 0 0 0.039985 2 35506 35341;35506 49.933 19.296 1 57443000 11689 9912 7993 8163 13510;13511 13511 -0.06455706970518804 FFDPSLLHL 9 Unmodified _FFDPSLLHL_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.79345703125 2 544.792392 1087.57023 0.2497 0.00013603 0.63859 0.0003479 0.88829 0.00048393 544.7929351089435 87.256 0.19608 86.751 86.681 86.877 -0.50423 18 7 3 0 0 0 0.30562 1 47748 47748 16.942 12.613 1 553760 11690 1454 7994 8164 13512 13512 0.0299493096565584 FFDPSLLHL 9 Unmodified _FFDPSLLHL_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7925415039062 2 544.792392 1087.57023 -0.25291 -0.00013778 0.57022 0.00031065 0.31732 0.00017287 544.7925309031256 86.649 0.10056 86.707 86.634 86.735 0.05822 7 5 2 0 0 0 0.013472 1 48144 48144 70.716 42.229 1 19791000 11691 1454 7994 8164 13513 13513 0.0299493096565584 FFDPSLLHLL 10 Unmodified _FFDPSLLHLL_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.3377685546875 2 601.334424 1200.6543 3.6466 0.0021928 -1.3441 -0.00080822 2.3026 0.0013846 601.3335208442935 99.401 0.34473 99.365 99.294 99.639 -0.036301 29 12 5 0 0 0 0.06987 1 55208 55208 64.236 49.398 1 95524000 11692 1454 7995 8165 13514 13514 0.06199462062568273 FFDPSLLHLL 10 Unmodified _FFDPSLLHLL_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3350219726562 2 601.334424 1200.6543 0.34018 0.00020456 0.85656 0.00051508 1.1967 0.00071964 601.3352148440213 100.73 0.20472 94.554 94.431 94.635 -6.1757 38 14 4 0 0 0 0.06987 1 67422 67422 74.423 58.576 1 351600000 11693 1454 7995 8165 13515 13515 0.06199462062568273 FFDPSLLHLL 10 Unmodified _FFDPSLLHLL_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 601.334424 1200.6543 0.35473 0.00021331 0.57276 0.00034442 0.92748 0.00055773 601.3344507586022 99.535 0.079048 99.378 99.328 99.407 -0.1575 0.0063512 0.0014154 NaN 64.236 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 205450 11694 1454 7995 8165 0.06199462062568273 FFDQPPLS 8 Unmodified _FFDQPPLS_ 0 0 0 REV__ENST00000451024.4_2_10:126138300-126138735:-|nuORF REV__ENST00000451024.4_2_10:126138300-126138735:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7345886230469 2 475.734543 949.454533 0.57465 0.00027338 -0.029873 -1.4212E-05 0.54477 0.00025917 475.73483760423846 88.543 0.20071 88.039 87.934 88.134 -0.50423 14 8 2 0 0 0 0.80676 1 48429 48429 2.5775 0.27475 1 224430 + 11695 27205 7996 8166 13516 13516 -0.022215928851892386 FFDSAYQGF 9 Unmodified _FFDSAYQGF_ 0 0 0 nc|ENSG00000120053|P17174-2|GOT1;ENSG00000120053|ENST00000370508|GOT1 nc|ENSG00000120053|P17174-2|GOT1 nc|ENSG00000120053|P17174-2|GOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2339477539062 2 541.234907 1080.45526 0.1743 9.4335E-05 -2.729 -0.001477 -2.5547 -0.0013827 541.2336737377316 68.601 0.43048 68.12 67.99 68.421 -0.48071 37 19 2 0 0 0 0.28047 1 37584 37584 18.135 5.6034 1 4871400 11696 3491 7997 8167 13517 13517 -0.08174798236154857 FFDSPGYY 8 Unmodified _FFDSPGYY_ 0 0 0 REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1 REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2112731933594 2 498.210901 994.407249 0.19827 9.8781E-05 0.17036 8.4875E-05 0.36863 0.00018366 498.21100662636513 61.829 0.28818 61.829 61.663 61.951 0 18 12 2 0 0 0 0.77907 1 34470 34470 10.183 10.183 1 1580400 + 11697 17959 7998 8168 13518 13518 -0.09017872156186968 FFDSQGQVLL 10 Unmodified _FFDSQGQVLL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000604105.1_1_15:21135288-21138168:-|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2971801757812 2 577.298039 1152.58152 -0.33717 -0.00019465 -0.9877 -0.0005702 -1.3249 -0.00076484 577.2972479384161 77.17 0.33115 76.687 76.537 76.868 -0.4826 33 14 3 0 0 0 0.40136 1 42274 42274 21.537 11.463 1 2129600 11698 16480 7999 8169 13519 13519 0.011337082691625255 FFDSQGQVLL 10 Unmodified _FFDSQGQVLL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000604105.1_1_15:21135288-21138168:-|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS AL20221201_MKP_PDAC_01 4 577.298583984375 2 577.298039 1152.58152 NaN NaN NaN NaN NaN NaN NaN 85.297 1 79.122 78.622 79.622 -6.1757 0 0 0 0.44191 1 56167 56167 29.082 9.8246 1 11699 16480 7999 8169 13520 13520 0.011337082691625255 FFDSQGQVLL 10 Unmodified _FFDSQGQVLL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000604105.1_1_15:21135288-21138168:-|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 577.298039 1152.58152 0.37801 0.00021823 0.27251 0.00015732 0.65052 0.00037555 577.2979130228126 76.645 0.18905 76.695 76.635 76.824 0.05011 0.0040856 0.001256 NaN 21.537 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1150900 11700 16480 7999 8169 0.011337082691625255 FFDSVQVVF 9 Unmodified _FFDSVQVVF_ 0 0 0 ENST00000534966.1_1_12:121222241-121229350:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3 ENST00000534966.1_1_12:121222241-121229350:-|nuORF ENST00000534966.1_1_12:121222241-121229350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7776489257812 2 544.276575 1086.5386 1.005 0.00054702 -0.87833 -0.00047805 0.12672 6.8972E-05 544.2760366210084 91.378 0.34193 91.415 91.244 91.586 0.036499 22 12 2 0 0 0 0.047196 1 50811 50811 46.021 33.489 1 6232600 11701 6544 8000 8170 13521 13521 -0.0012106178828616976 FFDSVQVVF 9 Unmodified _FFDSVQVVF_ 0 0 0 ENST00000534966.1_1_12:121222241-121229350:-|nuORF;ENSG00000157837|ENST00000353487|SPPL3 ENST00000534966.1_1_12:121222241-121229350:-|nuORF ENST00000534966.1_1_12:121222241-121229350:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7767333984375 2 544.276575 1086.5386 0.19769 0.0001076 -1.4883 -0.00081003 -1.2906 -0.00070244 544.7770495529503 99.786 0.24305 93.61 93.448 93.691 -6.1757 29 16 3 0 0 0 0.095405 1 66572 66572 34.102 22.462 1 72583000 11702 6544 8000 8170 13522 13522 -0.0012106178828616976 FFDTKRRLF 9 Unmodified _FFDTKRRLF_ 0 0 0 REV__ENSG00000090273|ENST00000321265|NUDC REV__ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.56494140625 3 410.564502 1228.67168 0.32006 0.00013141 -1.0722 -0.00044022 -0.75217 -0.00030882 410.5641771742038 15.794 0.042602 13.267 13.226 13.268 -2.5273 8 6 2 0 0 0 0.49766 1 8135 8135 7.609 1.8771 1 1447200 + 11703 17852 8001 8171 13523 13523 0.06648802388212971 FFDTNTSVL 9 Unmodified _FFDTNTSVL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2547607421875 2 522.25584 1042.49713 0.45033 0.00023519 -1.8711 -0.00097718 -1.4207 -0.00074199 522.2557336159011 68.275 0.39511 67.794 67.595 67.99 -0.48071 48 17 4 0 0 0 0.042911 2 37255 37255;37355 48.346 27.892 1 12244000 11704 8497 8002 8172 13524;13525 13524 -0.022422425476179342 FFDVYFFL 8 Unmodified _FFDVYFFL_ 0 0 0 REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF REV__ENST00000374825.8_1_6:32948646-32949051:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2679443359375 2 549.270761 1096.52697 0.49024 0.00026928 -1.5192 -0.00083446 -1.029 -0.00056519 549.7712319891112 84.499 0.79552 83.999 83.594 84.39 -0.49961 72 35 3 0 0 0 0.79669 1 46241 46241 8.5933 2.2392 1 886350 + 11705 26190 8003 8173 13526 13526 -0.017432588116207626 FFDYSGRDL 9 Unmodified _FFDYSGRDL_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000470286.1_1_2:172571934-172582592:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2592163085938 2 560.258914 1118.50327 0.67 0.00037537 -0.53124 -0.00029763 0.13876 7.7741E-05 560.2584766681863 53.627 0.25399 53.175 53.046 53.3 -0.45173 27 12 3 0 0 0 0.078314 1 29046 29046 38.176 10.002 1 7752600 11706 1216 8004 8174 13527 13527 -0.051237243160812795 FFEALMLSF 9 Unmodified _FFEALMLSF_ 0 0 0 ENST00000575695.5_1_16:74706404-74709236:-|nuORF ENST00000575695.5_1_16:74706404-74709236:-|nuORF ENST00000575695.5_1_16:74706404-74709236:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7738647460938 2 552.775354 1103.53615 NaN NaN NaN NaN NaN NaN NaN 88.113 1 88.113 87.613 88.613 0 0 0 0 0.82396 1 48778 48778 4.756 2.1785 1 11707 15516 8005 8175 13528 13528 -0.01147233517622226 FFEEVWQRRWW 11 Unmodified _FFEEVWQRRWW_ 0 0 0 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.8478393554688 2 834.907142 1667.79973 NaN NaN NaN NaN NaN NaN NaN 24.98 1 24.964 24.464 25.464 -0.016171 0 0 0 0.9435 1 12780 12780 0 0 1 + 11708 18034 8006 8176 13529 13529 -0.007456820885636262 FFEEVWQRRWW 11 Unmodified _FFEEVWQRRWW_ 0 0 0 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.6207885742188 2 834.907142 1667.79973 NaN NaN NaN NaN NaN NaN NaN 25.314 1 25.297 24.797 25.797 -0.017006 0 0 0 0.9435 1 12961 12961 0 0 1 + 11709 18034 8006 8176 13530 13530 -0.007456820885636262 FFEEVWQRRWW 11 Unmodified _FFEEVWQRRWW_ 0 0 0 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 835.2628784179688 2 834.907142 1667.79973 NaN NaN NaN NaN NaN NaN NaN 76.278 1 76.326 75.826 76.826 0.047943 0 0 0 0.9435 1 42087 42087 0 0 1 + 11710 18034 8006 8176 13531 13531 -0.007456820885636262 FFFERHWRKWS 11 Unmodified _FFFERHWRKWS_ 0 0 0 ENST00000543086.7_1_12:1192471-1192564:+|nuORF ENST00000543086.7_1_12:1192471-1192564:+|nuORF ENST00000543086.7_1_12:1192471-1192564:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.4080810546875 2 813.409852 1624.80515 NaN NaN NaN NaN NaN NaN NaN 89.338 1 89.385 88.885 89.885 0.047852 0 0 0 0.94313 1 49698 49698 0.26902 0.26902 1 11711 15067 8007 8177 13532 13532 0.017740414939225957 FFFFALFSFF 10 Unmodified _FFFFALFSFF_ 0 0 0 REV__ENST00000395323.7_1_2:30480584-30480668:+|nuORF REV__ENST00000395323.7_1_2:30480584-30480668:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3284301757812 2 660.328611 1318.64267 NaN NaN NaN NaN NaN NaN NaN 27.517 1 27.517 27.017 28.017 0 0 0 0 1.0019 1 14180 14180 0.45834 0 1 + 11712 26476 8008 8178 13533 13533 -0.0039073496079709 FFFFFDTGS 9 Unmodified _FFFFFDTGS_ 0 0 0 AluJb_dup107667|chr17:41526450-41526532:-|1.0196059845962082|0.4198366561400447|1.28|171.0|4|1|anti-sense AluJb_dup107667|chr17:41526450-41526532:-|1.0196059845962082|0.4198366561400447|1.28|171.0|4|1|anti-sense AluJb_dup107667|chr17:41526450-41526532:-|1.0196059845962082|0.4198366561400447|1.28|171.0|4|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2515869140625 2 557.74765 1113.48075 -0.70587 -0.0003937 -0.36212 -0.00020197 -1.068 -0.00059567 557.7474403676609 56.268 0.30908 55.782 55.614 55.923 -0.48554 54 15 5 0 0 0 0.49272 1 30568 30568 7.9102 0.62092 1 18159000 11713 15 8009 8179 13534 13534 -0.0714532371371206 FFFFFFEM 8 Unmodified _FFFFFFEM_ 0 0 0 ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENST00000532784.5_1_11:74303703-74306426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.26025390625 2 581.259339 1160.50413 NaN NaN NaN NaN NaN NaN NaN 13.16 1 13.17 12.67 13.67 0.0096512 0 0 0 0.97444 1 6489 6489 0.69038 0.088878 1 11714 14930 8010 8180 13535 13535 -0.06970601200737292 FFFFFFEM 8 Unmodified _FFFFFFEM_ 0 0 0 ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENST00000532784.5_1_11:74303703-74306426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2571411132812 2 581.259339 1160.50413 NaN NaN NaN NaN NaN NaN NaN 13.941 1 13.948 13.448 14.448 0.0073986 0 0 0 0.97444 1 6892 6892 0.69038 0.088878 1 11715 14930 8010 8180 13536 13536 -0.06970601200737292 FFFFFFFFKQF 11 Unmodified _FFFFFFFFKQF_ 0 0 0 ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENST00000468830.1_1_7:131163282-131172484:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 799.8954467773438 2 799.897192 1597.77983 0.80912 0.00064722 -1.3713 -0.0010969 -0.5622 -0.0004497 800.3974543674265 82.151 0.38318 75.975 75.796 76.179 -6.1757 37 20 3 0 0 0 0.62014 1 53942 53942 8.7454 5.7502 1 11524000 11716 13819 8011 8181 13537 13537 0.0048517391878704075 FFFFFFFFKQF 11 Unmodified _FFFFFFFFKQF_ 0 0 0 ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENST00000468830.1_1_7:131163282-131172484:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.6002807617188 3 533.600553 1597.77983 0.41899 0.00022358 -1.3131 -0.00070067 -0.8941 -0.00047709 533.9342911897451 82.152 0.62827 75.977 75.677 76.305 -6.1757 77 34 3 0 0 0 0.73114 2 53947 53947;54102 1.3296 0.82369 1 43954000 11717 13819 8011 8181 13538;13539 13538 0.0048517391878704075 FFFFFFRYQHQ 11 Unmodified _FFFFFFRYQHQ_ 0 0 0 ENST00000555275.5_1_14:58740703-58758361:-|nuORF ENST00000555275.5_1_14:58740703-58758361:-|nuORF ENST00000555275.5_1_14:58740703-58758361:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.72900390625 3 538.594461 1612.76155 0.35356 0.00019042 -0.87836 -0.00047308 -0.5248 -0.00028266 538.5937315988265 28.009 0.21436 24.861 24.788 25.003 -3.1482 14 11 2 0 0 0 0.30584 1 15552 15552 0.45452 0 1 5899500 11718 15226 8012 8182 13540 13540 -0.02031568003189932 FFFFLEMLYF 10 Unmodified _FFFFLEMLYF_ 0 0 0 REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 702.3428955078125 2 702.340861 1402.66717 NaN NaN NaN NaN NaN NaN NaN 102.42 1 96.249 95.749 96.749 -6.1757 0 0 0 0.61917 1 68735 68735 20.454 8.213 1 + 11719 27538 8013 8183 13541 13541 -0.018058428695439943 FFFFLEMLYFV 11 Unmodified _FFFFLEMLYFV_ 0 0 0 REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF REV__ENST00000473333.1_1_7:74160372-74160549:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.5853576660156 3 501.585804 1501.73558 -0.86857 -0.00043566 0.3249 0.00016297 -0.54367 -0.0002727 501.5861698643522 18.812 0.34622 18.835 18.704 19.05 0.023106 122 35 5 0 0 0 0.73115 1 9411 9411 0.45452 0.046251 1 15398000 + 11720 27538 8014 8184 13542 13542 0.004784017103020233 FFFFLFSFLFF 11 Unmodified _FFFFLFSFLFF_ 0 0 0 REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.593505859375 3 503.593287 1507.75803 0.36428 0.00018345 -0.34095 -0.0001717 0.023324 1.1746E-05 503.59310502391685 62.855 0.35074 62.834 62.678 63.029 -0.021614 62 17 4 0 0 0 0.56638 1 34334 34334 10.315 3.2781 1 42185000 + 11721 26404 8015 8185 13543 13543 0.024463691702294454 FFFFLFSFLFF 11 Unmodified _FFFFLFSFLFF_ 0 0 0 REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.9281616210938 3 503.593287 1507.75803 1.1933 0.00060093 -0.80661 -0.00040621 0.38668 0.00019473 503.59289669338665 92.004 0.39046 85.828 85.596 85.986 -6.1757 77 22 4 0 0 0 0.63851 2 60715 60715;60834 4.7159 2.0847 1 177680000 + 11722 26404 8015 8185 13544;13545 13544 0.024463691702294454 FFFFLFSFLFF 11 Unmodified _FFFFLFSFLFF_ 0 0 0 REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF REV__ENST00000392842.5_1_12:106976790-107075774:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.3083190917969 3 503.593287 1507.75803 1.1933 0.00060093 -0.80661 -0.00040621 0.38668 0.00019473 503.59289669338665 92.004 0.39046 85.828 85.596 85.986 -6.1757 77 22 4 0 0 0 0.30356 1 60917 60917 5.0475 3.5924 1 177680000 + 11723 26404 8015 8185 13546 13546 0.024463691702294454 FFFFLKRYFIW 11 Unmodified _FFFFLKRYFIW_ 0 0 0 REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 807.43505859375 2 807.437015 1612.85948 NaN NaN NaN NaN NaN NaN NaN 44.9 1 40.048 39.548 40.548 -4.852 0 0 0 0.94301 1 27468 27468 0.35063 0.043601 1 + 11724 28525 8016 8186 13547 13547 0.07756240592789254 FFFIYYRLFA 10 Unmodified _FFFIYYRLFA_ 0 0 0 ENST00000361283.2_1_13:115086600-115086639:+|nuORF ENST00000361283.2_1_13:115086600-115086639:+|nuORF ENST00000361283.2_1_13:115086600-115086639:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.865478515625 2 693.865892 1385.71723 NaN NaN NaN NaN NaN NaN NaN 93.083 1 93.083 92.583 93.583 0 0 0 0 1.0019 1 51466 51466 0.45834 0 1 11725 12180 8017 8187 13548 13548 0.03980027850593615 FFFLNVSF 8 Unmodified _FFFLNVSF_ 0 0 0 ENST00000334705.11_1_8:124824974-124825058:+|nuORF ENST00000334705.11_1_8:124824974-124825058:+|nuORF ENST00000334705.11_1_8:124824974-124825058:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7648620605469 2 510.763104 1019.51165 NaN NaN NaN NaN NaN NaN NaN 17.901 1 17.915 17.415 18.415 0.013865 0 0 0 0.95973 1 8936 8936 8.5933 0 1 11726 11888 8018 8188 13549 13549 0.0026787439120425915 FFFLRTFKY 9 Unmodified _FFFLRTFKY_ 0 0 0 REV__ENST00000602663.1_1_15:30781425-30781716:+|nuORF REV__ENST00000602663.1_1_15:30781425-30781716:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5661315917969 3 423.565732 1267.67537 1.1148 0.00047217 -0.5289 -0.00022403 0.58585 0.00024815 423.56555827026756 54.803 0.62291 48.938 48.656 49.279 -5.8653 123 38 4 0 0 0 0.34999 1 34653 34653 10.151 0 1 115430000 + 11727 29267 8019 8189 13550 13550 0.05223472162106191 FFFNLFRKEMI 11 Unmodified _FFFNLFRKEMI_ 0 0 0 REV__ENST00000368865.8_1_10:124923470-124923512:+|nuORF REV__ENST00000368865.8_1_10:124923470-124923512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 746.3968505859375 2 746.39449 1490.77443 NaN NaN NaN NaN NaN NaN NaN 82.342 1 82.404 81.904 82.904 0.062004 0 0 0 0.94184 1 45552 45552 1.1933 0.23107 1 + 11728 26022 8020 8190 13551 13551 0.04867127064653687 FFFNMLFWVI 10 Unmodified _FFFNMLFWVI_ 0 0 0 ENSG00000158457|ENST00000486685|TSPAN33 ENSG00000158457|ENST00000486685|TSPAN33 ENSG00000158457|ENST00000486685|TSPAN33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 682.348876953125 2 682.34902 1362.68349 0.44947 0.00030669 -0.19815 -0.0001352 0.25132 0.00017149 682.8505069323642 86.336 0.32074 85.832 85.699 86.02 -0.50318 17 13 2 0 0 0 0.72196 1 47272 47272 0.45834 0 1 289460 11729 6586 8021 8191 13552 13552 0.016652830871862534 FFFRADRKGK 10 Unmodified _FFFRADRKGK_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5723876953125 3 424.571768 1270.69348 1.1428 0.00048521 0.31048 0.00013182 1.4533 0.00061703 424.5719535960693 91.085 0.79386 84.909 84.577 85.371 -6.1757 110 45 3 0 0 0 0.6785 1 60339 60339 2.8433 0.10809 1 65107000 + 11730 19029 8022 8192 13553 13553 0.06895607136789295 FFFSINSNKI 10 Unmodified _FFFSINSNKI_ 0 0 0 REV__ENST00000475319.1_1_6:127635969-127636092:-|nuORF REV__ENST00000475319.1_1_6:127635969-127636092:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.293701171875 2 608.821681 1215.62881 0.72416 0.00044089 -0.044739 -2.7238E-05 0.67942 0.00041365 608.8218309811838 68.843 0.42413 68.868 68.681 69.106 0.025154 31 19 2 0 0 0 0.22941 1 37948 37948 13.906 0 1 1587800 + 11731 27571 8023 8193 13554 13554 0.029619875401522222 FFGCQQERPK 10 Unmodified _FFGCQQERPK_ 0 0 0 REV__nc|ENSG00000177302|Q13472-2|TOP3A REV__nc|ENSG00000177302|Q13472-2|TOP3A MSMS AL20221201_MKP_PDAC_01 4 413.8717651367188 3 413.869485 1238.58663 NaN NaN NaN NaN NaN NaN NaN 86.577 1 80.401 79.901 80.901 -6.1757 0 0 0 0.80141 1 57076 57076 7.4771 0 1 + 11732 22976 8024 8194 13555 13555 -0.023123111398945184 FFGEDSKATTS 11 Unmodified _FFGEDSKATTS_ 0 0 0 ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP MSMS AL20221201_MKP_PDAC_01 4 397.186767578125 3 397.183904 1188.52988 NaN NaN NaN NaN NaN NaN NaN 64 1 57.824 57.324 58.324 -6.1757 0 0 0 0.93933 1 41429 41429 1.2148 0.588 1 11733 10519 8025 8195 13556 13556 -0.05684080215405629 FFGNRRGPR 9 Unmodified _FFGNRRGPR_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9064636230469 3 369.537058 1105.58934 0.049222 1.8189E-05 0.04086 1.5099E-05 0.090082 3.3289E-05 369.53714855835375 37.312 0.25085 37.312 37.138 37.389 0 20 12 2 0 0 0 0.21835 1 19801 19801 0.86438 0 1 2831000 11734 2387 8026 8196 13557 13557 0.0407732509993366 FFGQHPVERD 10 Unmodified _FFGQHPVERD_ 0 0 0 nc|ENSG00000179152|Q8N3R3-3|TCAIM nc|ENSG00000179152|Q8N3R3-3|TCAIM nc|ENSG00000179152|Q8N3R3-3|TCAIM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7537841796875 2 616.296362 1230.57817 NaN NaN NaN NaN NaN NaN NaN 79.482 1 79.482 78.982 79.982 0 0 0 0 0.99388 1 44149 44149 1.3295 0.80477 1 11735 16417 8027 8197 13558 13558 -0.027895417848640136 FFGVIQNFY 9 Unmodified _FFGVIQNFY_ 0 0 0 REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.779296875 2 567.784567 1133.55458 0.76482 0.00043425 -1.7061 -0.00096871 -0.9413 -0.00053446 567.784940234082 82.619 1.8045 76.444 75.637 77.442 -6.1757 229 99 3 0 0 0 0.37804 1 53876 53876 13.508 3.434 1 40995000 + 11736 20688 8028 8198 13559 13559 -0.0068535555137714255 FFHDPLTLKF 10 Unmodified _FFHDPLTLKF_ 0 0 0 ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2291564941406 3 422.229008 1263.66519 1.4184 0.00059891 -0.045249 -1.9105E-05 1.3732 0.0005798 422.22871406802426 95.213 0.23096 89.037 88.931 89.162 -6.1757 32 12 3 0 0 0 0.1552 1 63046 63046 39.213 33.43 1 24221000 11737 12228 8029 8199 13560 13560 0.04390864436822994 FFHDPLTLKF 10 Unmodified _FFHDPLTLKF_ 0 0 0 ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8421630859375 2 632.839874 1263.66519 0.97546 0.00061731 0.29396 0.00018603 1.2694 0.00080334 632.8404418096824 95.246 0.15082 89.071 88.969 89.12 -6.1757 13 8 2 0 0 0 0.0068436 1 63068 63068 96.936 67.854 1 6487500 11738 12228 8029 8199 13561 13561 0.04390864436822994 FFHDRQKL 8 Unmodified _FFHDRQKL_ 0 0 0 REV__ENST00000604187.1_1_14:50517346-50518003:+|nuORF REV__ENST00000604187.1_1_14:50517346-50518003:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.793212890625 2 545.793258 1089.57196 0.52474 0.0002864 -0.62504 -0.00034114 -0.1003 -5.4741E-05 545.7927276268102 74.289 0.38191 73.813 73.593 73.974 -0.47588 23 15 2 0 0 0 0.72953 1 40637 40637 14.582 1.0738 1 2013600 + 11739 29284 8030 8200 13562 13562 0.030759847742729107 FFHEGQYVF 9 Unmodified _FFHEGQYVF_ 0 0 0 ENSG00000221947|ENST00000408926|XKR9 ENSG00000221947|ENST00000408926|XKR9 ENSG00000221947|ENST00000408926|XKR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2725219726562 2 587.271824 1172.5291 -0.20428 -0.00011997 0.82293 0.00048329 0.61866 0.00036332 587.2722099405581 61.409 0.2738 60.92 60.777 61.051 -0.48932 29 12 3 0 0 0 0.042911 1 33427 33427 48.346 27.892 1 3654700 11740 10563 8031 8201 13563 13563 -0.05026830073825295 FFHEGQYVF 9 Unmodified _FFHEGQYVF_ 0 0 0 ENSG00000221947|ENST00000408926|XKR9 ENSG00000221947|ENST00000408926|XKR9 ENSG00000221947|ENST00000408926|XKR9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3372802734375 2 587.271824 1172.5291 0.48512 0.0002849 0.067931 3.9894E-05 0.55305 0.00032479 587.2716565950755 60.961 0.29972 60.917 60.784 61.084 -0.04351 33 14 3 0 0 0 0.18811 1 33263 33263 17.113 12.357 1 5205300 11741 10563 8031 8201 13564 13564 -0.05026830073825295 FFHFRCGEL 9 Unmodified _FFHFRCGEL_ 0 0 0 REV__ENST00000447747.5_1_12:56615921-56617389:+|nuORF REV__ENST00000447747.5_1_12:56615921-56617389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2808227539062 2 578.273844 1154.53313 0.2935 0.00016972 3.6511 0.0021113 3.9446 0.002281 578.7781389084598 81.139 0.3629 81.139 80.963 81.326 0 41 17 3 0 0 0 0.58466 1 45090 45090 2.3027 0 1 1220000 + 11742 27166 8032 8202 13565 13565 -0.037950638517258994 FFHGYFSIGDL 11 Unmodified _FFHGYFSIGDL_ 0 0 0 ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.8775939941406 3 434.876634 1301.60807 1.1209 0.00048747 0.74054 0.00032204 1.8615 0.00080952 434.8772837691871 91.012 0.51675 84.836 84.577 85.094 -6.1757 51 30 3 0 0 0 0.71036 1 60054 60054 1.3296 0 1 15015000 11743 10556 8033 8203 13566 13566 -0.030666028395216927 FFHKSIQL 8 Unmodified _FFHKSIQL_ 0 0 0 ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.28759765625 2 510.287277 1018.56 NaN NaN NaN NaN NaN NaN NaN 56.234 1 55.749 55.249 56.249 -0.48554 0 0 0 0.4236 1 30528 30528 50.855 4.8341 1 11744 10429 8034 8204 13567 13567 0.05146368031103066 FFIAGRYEF 9 Unmodified _FFIAGRYEF_ 0 0 0 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1 nc|ENSG00000104812|P13807-2|GYS1 nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2869873046875 2 575.290017 1148.56548 0.75848 0.00043635 -0.25205 -0.000145 0.50643 0.00029134 575.2898354776993 70.33 0.37589 70.365 70.173 70.549 0.035507 50 17 4 0 0 0 0.331 1 38655 38655 21.537 21.537 1 24947000 11745 2237 8035 8205 13568 13568 -0.0028595317710369272 FFICLGKL 8 Unmodified _FFICLGKL_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7715759277344 2 470.769874 939.525196 0.74525 0.00035084 2.5684 0.0012091 3.3136 0.00156 470.7711882151035 74.382 0.1804 73.906 73.794 73.974 -0.47588 11 7 2 0 0 0 0.80044 1 40739 40739 6.3541 1.5981 1 539150 + 11746 19463 8036 8206 13569 13569 0.05301408898799309 FFICLGKL 8 Unmodified _FFICLGKL_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.769874 939.525196 0.74525 0.00035084 2.5684 0.0012091 3.3136 0.00156 470.7711882151035 74.382 0.1804 73.906 73.794 73.974 -0.47588 -0.11064 -0.00025499 NaN 6.3541 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 539150 + 11747 19463 8036 8206 0.05301408898799309 FFICLGKL 8 Unmodified _FFICLGKL_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.769874 939.525196 0.18613 8.7626E-05 3.5657 0.0016786 3.7518 0.0017662 470.7721805992196 74.083 0.27255 74.127 73.985 74.258 0.043983 0.11064 0.00068399 NaN 6.3541 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 478440 + 11748 19463 8036 8206 0.05301408898799309 FFIDQANYF 9 Unmodified _FFIDQANYF_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2728271484375 2 582.771657 1163.52876 0.45241 0.00026365 -0.029794 -1.7363E-05 0.42262 0.00024629 582.771756036188 84.679 0.20211 84.179 84.076 84.278 -0.49961 15 8 2 0 0 0 0.46577 1 46351 46351 9.3474 4.1168 1 640910 11749 6755 8037 8207 13570 13570 -0.046462497936772706 FFIDRPSTYF 10 Unmodified _FFIDRPSTYF_ 0 0 0 nc|ENSG00000151364|Q9BQ13-2|KCTD14;ENSG00000151364|ENST00000353172|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 nc|ENSG00000151364|Q9BQ13-2|KCTD14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.822265625 2 646.819138 1291.62372 1.2953 0.00083785 2.6233 0.0016968 3.9186 0.0025346 646.8208227560583 71.17 0.23339 71.209 71.089 71.323 0.039024 20 9 3 0 0 0 0.46077 1 39222 39222 18.373 8.2992 1 994330 11750 6108 8038 8208 13571 13571 -0.010423163224686505 FFILQLHDE 9 Unmodified _FFILQLHDE_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3027954101562 2 581.300581 1160.58661 1.3816 0.00080314 -0.64329 -0.00037395 0.73833 0.00042919 581.3005692024099 64.213 0.35936 64.202 64.037 64.396 -0.010536 62 17 5 0 0 0 0.20428 1 35145 35145 22.736 2.3217 1 23404000 11751 732 8039 8209 13572 13572 0.012740121317847297 FFIPYFIF 8 Unmodified _FFIPYFIF_ 0 0 0 ENSG00000111181|ENST00000684302|SLC6A12 ENSG00000111181|ENST00000684302|SLC6A12 ENSG00000111181|ENST00000684302|SLC6A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1977233886719 3 365.196757 1092.56844 -0.051692 -1.8878E-05 2.9477 0.0010765 2.896 0.0010576 365.19805904299767 35.036 0.28664 35.064 34.924 35.211 0.027405 19 12 2 0 0 0 0.5245 1 18527 18527 32.117 7.4431 1 17731000 11752 2764 8040 8210 13573 13573 0.025859219477069928 FFIRQIHKF 9 Unmodified _FFIRQIHKF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000460638.1_1_22:38282753-38284468:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5730590820312 3 412.573109 1234.6975 0.2111 8.7095E-05 0.031588 1.3032E-05 0.24269 0.00010013 412.5731173705685 42.512 0.15536 42.503 42.444 42.599 -0.0088196 13 6 3 0 0 0 0.13231 1 22769 22769 29.841 25.312 1 11954000 11753 1759 8041 8211 13574 13574 0.08953696630487684 FFIRQIHKF 9 Unmodified _FFIRQIHKF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000460638.1_1_22:38282753-38284468:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5736083984375 3 412.573109 1234.6975 0.64847 0.00026754 0.1425 5.8792E-05 0.79097 0.00032633 412.9074437549463 84.507 0.52115 78.331 77.996 78.517 -6.1757 49 29 2 0 0 0 0.27545 2 55589 55457;55589 18.373 8.2225 1 24960000 11754 1759 8041 8211 13575;13576 13576 0.08953696630487684 FFISIEVRYNY 11 Unmodified _FFISIEVRYNY_ 0 0 0 REV__nc|ENSG00000151067|Q13936-2|CACNA1C REV__nc|ENSG00000151067|Q13936-2|CACNA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.5856323242188 3 484.25036 1449.72925 0.32603 0.00015788 2.1328 0.0010328 2.4589 0.0011907 484.2509835049909 24.146 0.15231 24.167 24.063 24.216 0.021185 9 5 2 0 0 0 0.65096 1 12443 12443 8.7518 2.5174 1 2546200 + 11755 29702 8042 8212 13577 13577 0.022375998031520794 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8793334960938 3 436.879322 1307.61614 0.22992 0.00010045 1.8482 0.00080744 2.0781 0.00090789 436.87964748575456 91.198 0.39937 91.198 91.059 91.458 0 39 23 2 0 0 0 0.61903 1 50384 50384 0.20686 0.047535 1 721970 + 11756 22787 8043 8213 13578 13578 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8803405761719 3 436.879322 1307.61614 0.23145 0.00010112 1.8584 0.00081189 2.0898 0.00091301 436.8797459224941 97.762 0.9173 97.762 97.262 98.179 0 51 36 2 0 0 0 0.61903 1 53975 53975 0.20686 0.047535 1 631410 + 11757 22787 8043 8213 13579 13579 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8794250488281 3 436.879322 1307.61614 0.23166 0.00010121 1.4648 0.00063995 1.6965 0.00074116 436.8793563548453 101.61 0.85078 101.61 100.98 101.83 0 61 37 2 0 0 0 0.61903 1 55984 55984 0.20686 0.047535 1 610210 + 11758 22787 8043 8213 13580 13580 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789672851562 3 436.879322 1307.61614 0.23224 0.00010146 1.5702 0.000686 1.8025 0.00078746 436.8789885328348 102.57 0.70756 102.57 102.4 103.11 0 55 33 2 0 0 0 0.60664 2 56620 56501;56620 0.96228 0.33545 1 335740 + 11759 22787 8043 8213 13581;13582 13582 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795776367188 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 18.111 1 18.111 17.611 18.611 0 0 0 0 0.86054 1 8980 8980 0.20686 0.047535 1 + 11760 22787 8043 8213 13583 13583 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796997070312 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 73.656 1 73.656 73.156 74.156 0 0 0 0 0.85447 1 41006 41006 0.96228 0.33545 1 + 11761 22787 8043 8213 13584 13584 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795776367188 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 81.494 1 81.494 80.994 81.994 0 0 0 0 0.86054 1 45229 45229 0.20686 0.047535 1 + 11762 22787 8043 8213 13585 13585 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8799743652344 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 82.576 1 82.576 82.076 83.076 0 0 0 0 0.86054 1 45809 45809 0.20686 0.047535 1 + 11763 22787 8043 8213 13586 13586 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796081542969 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 83.899 1 83.899 83.399 84.399 0 0 0 0 0.86054 1 46522 46522 0.20686 0.047535 1 + 11764 22787 8043 8213 13587 13587 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8804321289062 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 85.357 1 85.357 84.857 85.857 0 0 0 0 0.86054 1 47305 47305 0.20686 0.047535 1 + 11765 22787 8043 8213 13588 13588 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8797912597656 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 85.575 1 85.575 85.075 86.075 0 0 0 0 0.86054 1 47420 47420 0.20686 0.047535 1 + 11766 22787 8043 8213 13589 13589 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796997070312 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 86.764 1 86.764 86.264 87.264 0 0 0 0 0.86054 1 48053 48053 0.20686 0.047535 1 + 11767 22787 8043 8213 13590 13590 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.879638671875 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 88.491 1 88.491 87.991 88.991 0 0 0 0 0.86054 1 48980 48980 0.20686 0.047535 1 + 11768 22787 8043 8213 13591 13591 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8794250488281 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 89.183 1 89.183 88.683 89.683 0 0 0 0 0.86054 1 49350 49350 0.20686 0.047535 1 + 11769 22787 8043 8213 13592 13592 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8792114257812 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 89.535 1 89.535 89.035 90.035 0 0 0 0 0.86054 1 49540 49540 0.20686 0.047535 1 + 11770 22787 8043 8213 13593 13593 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8802490234375 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 91.912 1 91.912 91.412 92.412 0 0 0 0 0.86054 1 50827 50827 0.20686 0.047535 1 + 11771 22787 8043 8213 13594 13594 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8790283203125 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 92.293 1 92.293 91.793 92.793 0 0 0 0 0.86054 1 51033 51033 0.20686 0.047535 1 + 11772 22787 8043 8213 13595 13595 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8800048828125 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 94.209 1 94.209 93.709 94.709 0 0 0 0 0.86054 1 52077 52077 0.20686 0.047535 1 + 11773 22787 8043 8213 13596 13596 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8797302246094 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 94.897 1 94.897 94.397 95.397 0 0 0 0 0.85447 1 52458 52458 0.96228 0.33545 1 + 11774 22787 8043 8213 13597 13597 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796997070312 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 95.529 1 95.529 95.029 96.029 0 0 0 0 0.86054 1 52801 52801 0.20686 0.047535 1 + 11775 22787 8043 8213 13598 13598 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795776367188 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 96.334 1 96.334 95.834 96.834 0 0 0 0 0.86054 1 53237 53237 0.20686 0.047535 1 + 11776 22787 8043 8213 13599 13599 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8799743652344 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 96.537 1 96.537 96.037 97.037 0 0 0 0 0.86054 1 53350 53350 0.20686 0.047535 1 + 11777 22787 8043 8213 13600 13600 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8788452148438 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 97.093 1 97.093 96.593 97.593 0 0 0 0 0.86054 1 53650 53650 0.20686 0.047535 1 + 11778 22787 8043 8213 13601 13601 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789978027344 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 103.08 1 103.08 102.58 103.58 0 0 0 0 0.86054 1 56832 56832 0.20686 0.047535 1 + 11779 22787 8043 8213 13602 13602 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789978027344 3 436.879322 1307.61614 0.23224 0.00010146 1.5702 0.000686 1.8025 0.00078746 436.8789885328348 102.57 0.70756 102.57 102.4 103.11 0 55 33 2 0 0 0 0.21906 1 56832 56832 0.20686 0.047535 1 335740 + 11780 22787 8043 8213 13603 13603 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8804931640625 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 93.359 1 92.902 92.402 93.402 -0.4574 0 0 0 0.86054 1 51020 51020 0.20686 0.047535 1 + 11781 22787 8043 8213 13604 13604 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8797912597656 3 436.879322 1307.61614 NaN NaN NaN NaN NaN NaN NaN 97.127 1 96.884 96.384 97.384 -0.24277 0 0 0 0.86054 1 53039 53039 0.20686 0.047535 1 + 11782 22787 8043 8213 13605 13605 -0.025367471237814243 FFIWMFFRD 9 Unmodified _FFIWMFFRD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 436.879322 1307.61614 -0.39387 -0.00017207 2.0127 0.00087931 1.6188 0.00070724 437.21527705549636 102.93 0.12086 102.88 102.81 102.93 -0.047928 0.1438 0.00090112 NaN 0.96228 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 365690 + 11783 22787 8043 8213 -0.025367471237814243 FFKCMHYF 8 Unmodified _FFKCMHYF_ 0 0 0 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1699829101562 3 374.834836 1121.48268 1.1424 0.00042822 -0.24137 -9.0473E-05 0.90107 0.00033775 374.83467207626364 36.588 0.44596 32.304 32.111 32.557 -4.2835 65 27 3 0 0 0 0.80624 1 21436 21436 1.8442 0 1 36943000 + 11784 19937 8044 8214 13606 13606 -0.07320309501096744 FFKDAANN 8 Unmodified _FFKDAANN_ 0 0 0 ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF ENST00000517543.1_1_8:4645208-4645454:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7228393554688 2 463.721967 925.429381 NaN NaN NaN NaN NaN NaN NaN 85.098 1 84.597 84.097 85.097 -0.5015 0 0 0 0.69365 1 46562 46562 28.487 5.3384 1 11785 14678 8045 8215 13607 13607 -0.03631647687768691 FFKDRHWLF 9 Unmodified _FFKDRHWLF_ 0 0 0 nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A nc|ENSG00000165055|Q6P1Q9-2|METTL2B nc|ENSG00000165055|Q6P1Q9-2|METTL2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5626525878906 3 432.560981 1294.66111 0.76504 0.00033093 1.9895 0.00086056 2.7545 0.0011915 432.8954821141715 58.503 0.31334 58.443 58.254 58.568 -0.060719 32 15 4 0 0 0 0.25681 1 31845 31845 23.79 15.844 1 9606700 11786 1476 8046 8216 13608 13608 0.025568197338088794 FFKDRHWLF 9 Unmodified _FFKDRHWLF_ 0 0 0 nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A nc|ENSG00000165055|Q6P1Q9-2|METTL2B nc|ENSG00000165055|Q6P1Q9-2|METTL2B MSMS AL20221201_MKP_PDAC_01 4 432.5611267089844 3 432.560981 1294.66111 NaN NaN NaN NaN NaN NaN NaN 98.236 1 92.06 91.56 92.56 -6.1757 0 0 0 0.090869 1 65138 65138 49.742 27.084 1 11787 1476 8046 8216 13609 13609 0.025568197338088794 FFKDSPLLL 9 Unmodified _FFKDSPLLL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MSMS AL20221201_MKP_PDAC_01 4 540.310302734375 2 540.310418 1078.60628 NaN NaN NaN NaN NaN NaN NaN 96.431 1 90.255 89.755 90.755 -6.1757 0 0 0 0.054801 1 63906 63906 55.503 11.096 1 11788 2180 8047 8217 13610 13610 0.07012388142538839 FFKIIESF 8 Unmodified _FFKIIESF_ 0 0 0 ENST00000543205.1_1_12:122762601-122763649:-|nuORF ENST00000543205.1_1_12:122762601-122763649:-|nuORF ENST00000543205.1_1_12:122762601-122763649:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7820434570312 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 52.684 1 52.684 52.184 53.184 0 0 0 0 0.39735 1 29166 29166 54.774 6.4277 1 11789 15069 8048 8218 13611 13611 0.03992430079733822 FFKPHWDEKF 10 Unmodified _FFKPHWDEKF_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.896728515625 3 460.896029 1379.66626 0.55771 0.00025705 1.3936 0.00064231 1.9513 0.00089936 460.8965607150901 48.123 0.2562 48.085 47.967 48.224 -0.038643 40 12 4 0 0 0 0.10406 1 25938 25938 53.47 43.154 1 8462400 11790 5995 8049 8219 13612 13612 -0.008389211942812835 FFKPHWDEKF 10 Unmodified _FFKPHWDEKF_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.896240234375 3 460.896029 1379.66626 1.01 0.00046551 0.16187 7.4604E-05 1.1719 0.00054011 460.89605005342236 83.453 0.40765 77.278 77.065 77.472 -6.1757 47 21 3 0 0 0 0.061704 2 54807 54807;54953 48.561 41.937 1 16389000 11791 5995 8049 8219 13613;13614 13613 -0.008389211942812835 FFLCMSFPY 9 Unmodified _FFLCMSFPY_ 0 0 0 REV__ENST00000242719.3_1_1:51738308-51738467:+|nuORF REV__ENST00000242719.3_1_1:51738308-51738467:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7572021484375 2 577.756107 1153.49766 0.50933 0.00029427 1.1849 0.00068458 1.6942 0.00097885 577.7569981302676 90.856 0.50102 90.361 90.162 90.663 -0.49457 93 33 3 0 0 0 0.21643 2 49696 49596;49696 16.942 3.8998 1 13443000 + 11792 24845 8050 8220 13615;13616 13616 -0.07294862423759696 FFLCMSFPY 9 Unmodified _FFLCMSFPY_ 0 0 0 REV__ENST00000242719.3_1_1:51738308-51738467:+|nuORF REV__ENST00000242719.3_1_1:51738308-51738467:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 577.756107 1153.49766 0.76993 0.00044483 2.1397 0.0012362 2.9097 0.0016811 577.7574939347946 90.229 0.30592 90.271 90.188 90.494 0.042183 -0.062764 0.0006368 NaN 16.942 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4974100 + 11793 24845 8050 8220 -0.07294862423759696 FFLDIHNIHVM 11 Unmodified _FFLDIHNIHVM_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2327880859375 3 462.572669 1384.69618 -0.059915 -2.7715E-05 -3.1996 -0.00148 -3.2595 -0.0015077 462.5706222335158 32.247 0.10289 32.277 32.216 32.319 0.029743 6 4 2 0 0 0 0.30599 1 16939 16939 0.50596 0.051438 1 1339200 11794 8061 8051 8221 13617 13617 0.01921694479415237 FFLDRSAHL 9 Unmodified _FFLDRSAHL_ 0 0 0 ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12 ENST00000529970.5_1_11:120278459-120348246:+|nuORF ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.19775390625 3 369.197819 1104.57163 -0.23332 -8.6141E-05 0.098664 3.6427E-05 -0.13466 -4.9714E-05 369.198004426012 51.472 0.15437 51.418 51.325 51.479 -0.053871 16 7 3 0 0 0 0.43463 1 27853 27853 15.248 0 1 2133900 11795 9882 8052 8222 13618 13618 0.023525650544115706 FFLFIFRRIH 10 Unmodified _FFLFIFRRIH_ 0 0 0 REV__ENSG00000169777|ENST00000382492|TAS2R1 REV__ENSG00000169777|ENST00000382492|TAS2R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.4088745117188 2 698.40605 1394.79755 NaN NaN NaN NaN NaN NaN NaN 15.925 1 15.93 15.43 16.43 0.0050564 0 0 0 1.0024 1 7960 7960 0.40072 0.093686 1 + 11796 22424 8053 8223 13619 13619 0.11593933964309144 FFLFSKALFWF 11 Unmodified _FFLFSKALFWF_ 0 0 0 ENST00000439268.6_1_19:5916266-5917058:-|nuORF ENST00000439268.6_1_19:5916266-5917058:-|nuORF ENST00000439268.6_1_19:5916266-5917058:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 727.393798828125 2 726.889367 1451.76418 0.28503 0.00020718 1.4448 0.0010502 1.7299 0.0012574 726.8905715438982 82.443 0.58936 76.268 75.932 76.521 -6.1757 66 32 3 0 0 0 0.27675 1 54328 54328 15.248 3.0078 1 22832000 11797 13373 8054 8224 13620 13620 0.05636887401715285 FFLIISGSNI 10 Unmodified _FFLIISGSNI_ 0 0 0 ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.81494140625 2 555.813325 1109.6121 0.45511 0.00025296 0.01894 1.0527E-05 0.47405 0.00026348 555.8134443614089 73.543 0.35258 73.587 73.361 73.713 0.043983 42 15 3 0 0 0 0.067957 2 40461 40461;40560 53.833 2.9778 1 11070000 11798 11823 8055 8225 13621;13622 13621 0.06167486654203458 FFLIISGSNI 10 Unmodified _FFLIISGSNI_ 0 0 0 ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.8154296875 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 87.635 1 81.459 80.959 81.959 -6.1757 0 0 0 0.61917 1 57796 57796 20.454 2.3073 1 11799 11823 8055 8225 13623 13623 0.06167486654203458 FFLIISGSNI 10 Unmodified _FFLIISGSNI_ 0 0 0 ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF ENST00000326840.10_1_3:98518138-98518207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.8133544921875 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 88.033 1 81.857 81.357 82.357 -6.1757 0 0 0 0.3465 1 58066 58066 34.402 3.7652 1 11800 11823 8055 8225 13624 13624 0.06167486654203458 FFLKVSELF 9 Unmodified _FFLKVSELF_ 0 0 0 ENSG00000129515|ENST00000362031|SNX6;nc|ENSG00000129515|Q9UNH7-2|SNX6;ENST00000556162.5_1_14:35032330-35073396:-|nuORF ENSG00000129515|ENST00000362031|SNX6 ENSG00000129515|ENST00000362031|SNX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.82080078125 2 565.318243 1128.62193 2.1147 0.0011955 0.47725 0.0002698 2.592 0.0014653 565.3186693074807 93.331 0.23359 93.354 93.214 93.448 0.022987 18 8 3 0 0 0 0.044011 1 51906 51906 47.749 22.349 1 3353400 11801 4145 8056 8226 13625 13625 0.06276674659557102 FFLLLMSYLFI 11 Unmodified _FFLLLMSYLFI_ 0 0 0 ENSG00000255713|ENST00000545221|OR4D2 ENSG00000255713|ENST00000545221|OR4D2 ENSG00000255713|ENST00000545221|OR4D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.5989379882812 3 469.597932 1405.77197 1.0795 0.00050693 -0.33858 -0.000159 0.74092 0.00034793 469.5977184458166 89.595 0.55774 83.419 83.127 83.685 -6.1757 92 30 4 0 0 0 0.29431 1 59035 59035 27.088 4.3134 1 67021000 11802 10795 8057 8227 13626 13626 0.0853127860702898 FFLNWYFIF 9 Unmodified _FFLNWYFIF_ 0 0 0 ENST00000316448.9_1_19:13054757-13054979:+|nuORF ENST00000316448.9_1_19:13054757-13054979:+|nuORF ENST00000316448.9_1_19:13054757-13054979:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8834838867188 3 432.886582 1295.63792 NaN NaN NaN NaN NaN NaN NaN 58.45 1 58.389 57.889 58.889 -0.060719 0 0 0 0.81228 1 31833 31833 5.7319 1.5423 1 11803 11738 8058 8228 13627 13627 0.001923808964647833 FFLRKLVLP 9 Unmodified _FFLRKLVLP_ 0 0 0 CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 566.8641967773438 2 566.865695 1131.71684 NaN NaN NaN NaN NaN NaN NaN 109.43 1 103.26 102.76 103.76 -6.1757 0 0 0 0.85737 1 73086 73086 0.6015 0.076735 1 11804 132 8059 8229 13628 13628 0.15624652921405868 FFLRKLVLP 9 Unmodified _FFLRKLVLP_ 0 0 0 CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 566.8646850585938 2 566.865695 1131.71684 NaN NaN NaN NaN NaN NaN NaN 109.62 1 103.44 102.94 103.94 -6.1757 0 0 0 0.85737 1 73197 73197 0.6015 0.076735 1 11805 132 8059 8229 13629 13629 0.15624652921405868 FFLRKLVLP 9 Unmodified _FFLRKLVLP_ 0 0 0 CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant CNIH3|p.L63F|1|0.05|ENSG00000143786|chr1:224684832-224684832|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 566.8649291992188 2 566.865695 1131.71684 NaN NaN NaN NaN NaN NaN NaN 109.8 1 103.62 103.12 104.12 -6.1757 0 0 0 0.85737 1 73307 73307 0.6015 0.076735 1 11806 132 8059 8229 13630 13630 0.15624652921405868 FFLWRSFRSD 10 Unmodified _FFLWRSFRSD_ 0 0 0 ENST00000557038.5_2_14:39734598-39748673:+|nuORF;ENST00000556990.1_1_14:39736294-39748673:+|nuORF ENST00000557038.5_2_14:39734598-39748673:+|nuORF ENST00000557038.5_2_14:39734598-39748673:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 681.25390625 2 680.843479 1359.67241 NaN NaN NaN NaN NaN NaN NaN 86.007 1 86.007 85.507 86.507 0 0 0 0 1.0024 1 47649 47649 0.40072 0.093686 1 11807 15250 8060 8230 13631 13631 0.006955970372700904 FFMWLQMAGF 10 Unmodified _FFMWLQMAGF_ 0 0 0 chr2:131686211-131686330|179|35.31|0.0|21.75|+|2|C2orf27A,C2orf27A|1 chr2:131686211-131686330|179|35.31|0.0|21.75|+|2|C2orf27A,C2orf27A|1 chr2:131686211-131686330|179|35.31|0.0|21.75|+|2|C2orf27A,C2orf27A|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.5328674316406 3 426.533046 1276.57731 NaN NaN NaN NaN NaN NaN NaN 18.273 1 18.286 17.786 18.786 0.013865 0 0 0 0.98914 1 9149 9149 0.77653 0.078866 1 11808 105 8061 8231 13632 13632 -0.049917957497882526 FFNIQVSGNSL 11 Unmodified _FFNIQVSGNSL_ 0 0 0 REV__ENST00000564794.1_1_16:23700038-23701081:+|nuORF REV__ENST00000564794.1_1_16:23700038-23701081:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.3145141601562 2 613.31422 1224.61389 NaN NaN NaN NaN NaN NaN NaN 64.553 1 64.553 64.053 65.053 0 0 0 0 0.79635 1 36002 36002 12.241 1.4167 1 + 11809 22160 8062 8232 13633 13633 0.010564956721736962 FFNSVRSVF 9 Unmodified _FFNSVRSVF_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000467790.5_1_1:79115880-79120915:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3246459960938 2 551.787641 1101.56073 0.46372 0.00025587 0.18398 0.00010152 0.64769 0.00035739 551.7877827673908 63.29 0.39027 63.269 63.089 63.479 -0.021614 34 19 2 0 0 0 0.13704 1 34547 34547 32.786 11.039 1 23647000 11810 4995 8063 8233 13634 13634 0.014011626801448074 FFNSVRSVF 9 Unmodified _FFNSVRSVF_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000467790.5_1_1:79115880-79120915:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7886962890625 2 551.787641 1101.56073 0.84896 0.00046845 -0.13323 -7.3517E-05 0.71573 0.00039493 551.7881241529881 80.216 0.99858 74.04 73.586 74.585 -6.1757 104 58 3 0 0 0 0.011211 2 52662 52514;52662 83.429 36.928 1 25980000 11811 4995 8063 8233 13635;13636 13636 0.014011626801448074 FFPCFIKIESF 11 Unmodified _FFPCFIKIESF_ 0 0 0 REV__ENST00000278823.6_1_11:62360742-62360865:-|nuORF REV__ENST00000278823.6_1_11:62360742-62360865:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.221435546875 3 459.901904 1376.68388 1.5126 0.00069566 1.9505 0.00089704 3.4631 0.0015927 459.90259396703317 79.395 0.31158 73.219 73.008 73.32 -6.1757 28 17 3 0 0 0 0.30403 1 52074 52074 4.7159 0 1 10381000 + 11812 25184 8064 8234 13637 13637 0.010606580163994295 FFPCFINSFNI 11 Unmodified _FFPCFINSFNI_ 0 0 0 REV__ENST00000520079.1_1_8:37996261-37996586:+|nuORF REV__ENST00000520079.1_1_8:37996261-37996586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.8241577148438 2 674.823366 1347.63218 -0.023414 -1.5801E-05 0.5477 0.0003696 0.52428 0.0003538 674.82353419948 78.556 0.35719 78.556 78.359 78.716 0 42 17 3 0 0 0 0.62338 1 43608 43608 10.151 0 1 1929600 + 11813 28271 8065 8235 13638 13638 -0.027730856774951462 FFPERRYFYWY 11 Unmodified _FFPERRYFYWY_ 0 0 0 nc|ENSG00000078549|P41586-5|ADCYAP1R1;nc|ENSG00000078549|P41586-3|ADCYAP1R1;ENSG00000078549|ENST00000304166|ADCYAP1R1;nc|ENSG00000078549|P41586-4|ADCYAP1R1;nc|ENSG00000078549|P41586-2|ADCYAP1R1 nc|ENSG00000078549|P41586-5|ADCYAP1R1 nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.6019287109375 3 558.601504 1672.78268 NaN NaN NaN NaN NaN NaN NaN 17.888 1 17.893 17.393 18.393 0.0050564 0 0 0 0.9435 1 9043 9043 0.094841 0.094841 1 11814 1245 8066 8236 13639 13639 -0.026796026943202378 FFPKNYQTFV 10 Unmodified _FFPKNYQTFV_ 0 0 0 REV__ENSG00000115084|ENST00000245680|SLC35F5 REV__ENSG00000115084|ENST00000245680|SLC35F5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8882141113281 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 39.509 1 39.521 39.021 40.021 0.011452 0 0 0 1.0019 1 21046 21046 0.15932 0 1 + 11815 18950 8067 8237 13640 13640 0.011222740571611212 FFPNEQLTCEP 11 Carbamidomethyl (C) _FFPNEQLTC(Carbamidomethyl (C))EP_ FFPNEQLTC(1)EP FFPNEQLTC(62)EP 0 1 0 REV__ENSG00000135346|ENST00000627148|CGA REV__ENSG00000135346|ENST00000627148|CGA MSMS AL20221201_MKP_PDAC_01 4 691.308837890625 2 691.308277 1380.602 NaN NaN NaN NaN NaN NaN NaN 101.75 1 95.575 95.075 96.075 -6.1757 0 0 0 0.052661 1 68296 68296 61.602 13.853 1 + 11816 20055 8068 8238 13641 13641 1041 -0.0730748913338175 FFPQILEGF 9 Unmodified _FFPQILEGF_ 0 0 0 REV__nc|ENSG00000165695|Q96MA6-2|AK8 REV__nc|ENSG00000165695|Q96MA6-2|AK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2904663085938 2 549.286943 1096.55933 -0.16692 -9.1688E-05 1.2703 0.00069777 1.1034 0.00060608 549.2877815342046 51.462 0.44921 51.049 50.856 51.305 -0.41351 59 23 4 0 0 0 0.28023 1 27703 27703 18.146 1.2041 1 15252000 + 11817 22040 8069 8239 13642 13642 0.014915285913730258 FFPSIKELF 9 Unmodified _FFPSIKELF_ 0 0 0 REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF REV__ENST00000302517.7_1_5:139063018-139063435:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.311279296875 2 564.310418 1126.60628 0.90257 0.00050933 1.5762 0.00088949 2.4788 0.0013988 564.3110649166323 101.67 0.11566 95.492 95.429 95.545 -6.1757 12 5 3 0 0 0 0.18118 1 68274 68274 18.135 2.2878 1 30816000 + 11818 25337 8070 8240 13643 13643 0.04804388142520111 FFQEDDETEA 10 Unmodified _FFQEDDETEA_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;ENST00000521092.5_1_19:48737658-48744277:-|nuORF;ENST00000518596.5_1_19:48737658-48744277:-|nuORF;ENST00000522051.5_1_19:48737658-48744277:-|nuORF;ENST00000517778.5_1_19:48737137-48744277:-|nuORF nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MSMS AL20221201_MKP_PDAC_01 4 410.83203125 3 410.831419 1229.47243 NaN NaN NaN NaN NaN NaN NaN 92.839 1 86.663 86.163 87.163 -6.1757 0 0 0 0.94014 1 61409 61409 5.7834 2.7112 1 11819 2328 8071 8241 13644 13644 -0.1331296721164108 FFRGSLGPEQ 10 Unmodified _FFRGSLGPEQ_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8611755371094 3 379.861096 1136.56146 0.039261 1.4914E-05 0.033395 1.2686E-05 0.072656 2.7599E-05 379.86116490505873 29.284 0.26093 29.314 29.154 29.415 0.030106 25 11 3 0 0 0 0.1942 1 15264 15264 29.437 10.075 1 16531000 + 11820 19519 8072 8242 13645 13645 -0.0013604267080609134 FFRGSLGPEQ 10 Unmodified _FFRGSLGPEQ_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8603515625 3 379.861096 1136.56146 1.4357 0.00054537 -0.51837 -0.00019691 0.91734 0.00034846 379.86082106367513 32.172 0.84187 28.316 27.89 28.732 -3.8562 137 47 4 0 0 0 0.65282 1 18477 18477 4.7159 0.52642 1 533990000 + 11821 19519 8072 8242 13646 13646 -0.0013604267080609134 FFRGSLGPEQ 10 Unmodified _FFRGSLGPEQ_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.861096 1136.56146 0.039261 1.4914E-05 0.033395 1.2686E-05 0.072656 2.7599E-05 379.86116490505873 29.284 0.26093 29.314 29.154 29.415 0.030106 0 0 NaN 29.437 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 16531000 + 11822 19519 8072 8242 -0.0013604267080609134 FFRKRFPTCF 10 Unmodified _FFRKRFPTCF_ 0 0 0 ENST00000455271.5_1_15:63449103-63449277:-|nuORF ENST00000455271.5_1_15:63449103-63449277:-|nuORF ENST00000455271.5_1_15:63449103-63449277:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2384033203125 3 450.237621 1347.69103 0.42368 0.00019076 1.8817 0.0008472 2.3054 0.001038 450.238345588732 29.69 0.20728 29.72 29.632 29.84 0.030104 16 8 3 0 0 0 0.68371 1 15519 15519 4.7159 0.30977 1 1812600 11823 13580 8073 8243 13647 13647 0.031094354074866715 FFRRQWKRSRH 11 Unmodified _FFRRQWKRSRH_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 802.4470825195312 2 802.445092 1602.87563 NaN NaN NaN NaN NaN NaN NaN 74.699 1 74.745 74.245 75.245 0.045959 0 0 0 0.94301 1 41178 41178 0.35063 0.043601 1 + 11824 19900 8074 8244 13648 13648 0.09830759602255057 FFRSLHFF 8 Unmodified _FFRSLHFF_ 0 0 0 ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP ENSG00000188312|ENST00000375587|CENPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8608093261719 3 367.527388 1099.56034 -0.59736 -0.00021955 2.0254 0.00074439 1.428 0.00052485 367.52784941046286 16.693 0.095253 16.693 16.662 16.757 0 38 23 2 0 0 0 0.80624 1 8189 8189 1.8442 0 1 628970 11825 9646 8075 8245 13649 13649 0.014537877509610553 FFRVEELHLQ 10 Unmodified _FFRVEELHLQ_ 0 0 0 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9020080566406 3 439.903183 1316.68772 NaN NaN NaN NaN NaN NaN NaN 21.961 1 21.975 21.475 22.475 0.013796 0 0 0 0.99146 1 11267 11267 1.5923 0.37745 1 + 11826 29887 8076 8246 13650 13650 0.04204463834480521 FFSFYFGLRF 10 Unmodified _FFSFYFGLRF_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2264099121094 3 444.225486 1329.65463 0.91639 0.00040708 1.1936 0.00053024 2.11 0.00093733 444.2262295482202 47.542 0.58928 47.503 47.28 47.869 -0.038643 101 27 5 0 0 0 0.67755 1 25671 25671 5.4027 0.68679 1 30475000 11827 10527 8077 8247 13651 13651 0.0029888178239616536 FFSHCRSLF 9 Unmodified _FFSHCRSLF_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5511474609375 3 381.851655 1142.53313 1.3963 0.00053318 2.7127 0.0010359 4.109 0.001569 382.1865003446402 21.939 0.81343 19.205 18.9 19.714 -2.7348 59 44 2 0 0 0 0.21367 1 11732 11732 2.7352 0 1 2338400 11828 10696 8078 8248 13652 13652 -0.032430638517553234 FFSPKVVSL 9 Unmodified _FFSPKVVSL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2985229492188 2 512.29731 1022.58007 0.85986 0.0004405 -0.12608 -6.4589E-05 0.73378 0.00037592 512.2973967207206 65.112 0.24223 65.112 64.978 65.22 1.5259E-05 27 11 3 0 0 0 0.05483 1 35672 35672 43.772 20.624 1 4297800 11829 5256 8079 8249 13653 13653 0.06968118971053627 FFSPLQKAMLP 11 Unmodified _FFSPLQKAMLP_ 0 0 0 ENST00000519007.5_1_8:91013720-91041621:+|nuORF;DECR1-SAMSN1|1|fusion;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1 ENST00000519007.5_1_8:91013720-91041621:+|nuORF ENST00000519007.5_1_8:91013720-91041621:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.9020080566406 3 426.902015 1277.68422 0.18327 7.8238E-05 -0.49163 -0.00020988 -0.30836 -0.00013164 426.90193199515886 25.181 0.33835 22.298 22.211 22.549 -2.8831 41 27 2 0 0 0 0.6747 1 13847 13847 3.3557 0.51244 1 8964300 11830 232 8080 8250 13654 13654 0.05648077736236701 FFSRQSCNPL 10 Unmodified _FFSRQSCNPL_ 0 0 0 ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF ENST00000469739.6_1_17:18188617-18210429:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.1945190429688 3 400.193969 1197.56008 NaN NaN NaN NaN NaN NaN NaN 17.052 1 14.466 13.966 14.966 -2.5866 0 0 0 0.91523 1 8883 8883 3.8763 1.1411 1 11831 13844 8081 8251 13655 13655 -0.03080000031218333 FFSVYSFLF 9 Unmodified _FFSVYSFLF_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1961669921875 3 386.195304 1155.56408 -0.58314 -0.0002252 2.7775 0.0010727 2.1944 0.00084745 386.1961967695786 34.879 0.24312 34.879 34.773 35.016 0 16 12 2 0 0 0 0.5029 1 18438 18438 4.5289 1.8976 1 2341400 11832 7578 8082 8252 13656 13656 -0.007475872658460503 FFTDYFFYFYR 11 Unmodified _FFTDYFFYFYR_ 0 0 0 ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL ENSG00000166268|ENST00000552032|MYRFL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 808.3706665039062 2 808.366453 1614.71835 NaN NaN NaN NaN NaN NaN NaN 85.548 1 85.046 84.546 85.546 -0.5015 0 0 0 0.94338 1 46818 46818 0.30703 0.30703 1 11833 7462 8083 8253 13657 13657 -0.06441802571157496 FFTHCFGHDI 10 Unmodified _FFTHCFGHDI_ 0 0 0 ENSG00000205409|ENST00000329322|OR52E6 ENSG00000205409|ENST00000329322|OR52E6 ENSG00000205409|ENST00000329322|OR52E6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.514892578125 3 408.514931 1222.52296 NaN NaN NaN NaN NaN NaN NaN 85.187 1 84.686 84.186 85.186 -0.5015 0 0 0 0.96627 1 46611 46611 2.086 0 1 11834 10366 8084 8254 13658 13658 -0.07939671576968976 FFTHVQELF 9 Unmodified _FFTHVQELF_ 0 0 0 ENSG00000017797|ENST00000383432|RALBP1 ENSG00000017797|ENST00000383432|RALBP1 ENSG00000017797|ENST00000383432|RALBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2963256835938 2 584.295299 1166.57605 NaN NaN NaN NaN NaN NaN NaN 72.467 1 72.509 72.009 73.009 0.041725 0 0 0 0.50124 1 39905 39905 15.847 2.3393 1 11835 505 8085 8255 13659 13659 -0.0005797052267553227 FFTHVQELF 9 Unmodified _FFTHVQELF_ 0 0 0 ENSG00000017797|ENST00000383432|RALBP1 ENSG00000017797|ENST00000383432|RALBP1 ENSG00000017797|ENST00000383432|RALBP1 MSMS AL20221201_MKP_PDAC_01 4 584.29638671875 2 584.295299 1166.57605 NaN NaN NaN NaN NaN NaN NaN 94.872 1 88.697 88.197 89.197 -6.1757 0 0 0 0.065563 1 62842 62842 52.268 12.311 1 11836 505 8085 8255 13660 13660 -0.0005797052267553227 FFVDEDVF 8 Unmodified _FFVDEDVF_ 0 0 0 REV__ENSG00000060339|ENST00000265872|CCAR1 REV__ENSG00000060339|ENST00000265872|CCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2326965332031 2 509.231833 1016.44911 0.48749 0.00024825 1.5166 0.00077228 2.004 0.0010205 509.23230467769525 68.369 0.26479 68.369 68.244 68.509 0 19 11 2 0 0 0 0.79669 1 38103 38103 8.5933 2.8329 1 710840 + 11837 17324 8086 8256 13661 13661 -0.05845316467662087 FFVKLLLE 8 Unmodified _FFVKLLLE_ 0 0 0 REV__ENST00000609237.5_2_2:136751538-136753834:+|nuORF REV__ENST00000609237.5_2_2:136751538-136753834:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.3517150878906 2 504.810054 1007.60555 1.5693 0.0007922 -1.2169 -0.0006143 0.35241 0.0001779 504.8080381008376 104.62 0.28404 98.44 98.275 98.559 -6.1757 29 19 2 0 0 0 8.7369 1 70038 70038 5.7604 0 1 15502000 + 11838 29329 8087 8257 13662 13662 0.10205593493481047 FFYEKAILKF 10 Unmodified _FFYEKAILKF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.9136657714844 3 435.912908 1304.7169 0.82449 0.0003594 0.65008 0.00028338 1.4746 0.00064278 435.9131056351444 68.872 0.21399 68.897 68.77 68.984 0.025146 24 9 3 0 0 0 0.43662 1 37843 37843 19.626 14.91 1 3082600 11839 2534 8088 8258 13663 13663 0.07672608130724257 FFYEKAILKF 10 Unmodified _FFYEKAILKF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MSMS AL20221201_MKP_PDAC_01 4 435.9128112792969 3 435.912908 1304.7169 NaN NaN NaN NaN NaN NaN NaN 93.514 1 87.339 86.839 87.839 -6.1757 0 0 0 0.41558 1 61898 61898 30.431 20.667 1 11840 2534 8088 8258 13664 13664 0.07672608130724257 FFYFYFYLFCT 11 Unmodified _FFYFYFYLFCT_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 780.8480834960938 2 780.84905 1559.68355 -0.38622 -0.00030158 -1.6633 -0.0012988 -2.0495 -0.0016004 781.3494804121954 32.197 0.23531 32.068 31.94 32.176 -0.12915 23 8 4 0 0 0 0.71036 1 16756 16756 3.2813 1.9518 1 4076500 + 11841 28032 8089 8259 13665 13665 -0.07390761703459248 FFYKQREIL 9 Unmodified _FFYKQREIL_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3464965820312 2 622.345323 1242.67609 0.69865 0.0004348 2.6525 0.0016507 3.3511 0.0020855 622.3474735274546 99.968 0.099838 93.792 93.755 93.855 -6.1757 9 6 2 0 0 0 0.2546 1 66759 66759 20.454 4.3045 1 15371000 + 11842 23082 8090 8260 13666 13666 0.06446266811144596 FFYLLPPI 8 Unmodified _FFYLLPPI_ 0 0 0 nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.29150390625 2 505.291497 1008.56844 0.027573 1.3933E-05 0.95827 0.0004842 0.98584 0.00049814 505.2920194445024 87.498 0.2957 87.551 87.477 87.772 0.053352 18 13 2 0 0 0 0.80044 1 48656 48656 6.3541 6.3541 1 24356000 11843 930 8091 8261 13667 13667 0.0644992194771703 FFYMPTQLHV 10 Unmodified _FFYMPTQLHV_ 0 0 0 REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF REV__ENST00000419087.1_1_1:247782982-247783861:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2146301269531 3 428.214482 1281.62162 0.71176 0.00030478 0.085382 3.6562E-05 0.79714 0.00034135 428.54870526136574 74.768 0.38588 74.292 74.11 74.496 -0.47588 20 15 2 0 0 0 0.72044 1 40907 40907 0.62683 0.21856 1 650430 + 11844 24022 8092 8262 13668 13668 -0.007930683319273157 FFYQVLESI 9 Unmodified _FFYQVLESI_ 0 0 0 REV__ENSG00000068650|ENST00000375645|ATP11A;REV__ENST00000459908.5_1_13:113512247-113512673:+|nuORF REV__ENSG00000068650|ENST00000375645|ATP11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.800537109375 2 573.297507 1144.58046 0.23885 0.00013693 0.022056 1.2644E-05 0.26091 0.00014958 573.7999959766079 93.274 1.069 87.098 86.534 87.603 -6.1757 267 72 5 0 0 0 0.30562 1 61736 61736 16.942 3.0362 1 521850000 + 11845 17438;27284 8093 8263 13669 13669 0.013954939002360334 FGADVVSKF 9 Unmodified _FGADVVSKF_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000462832.5_1_2:29006774-29038903:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2547302246094 2 485.255643 968.496732 0.48405 0.00023489 1.3496 0.00065489 1.8336 0.00088977 485.25499766791904 52.883 0.36723 52.431 52.28 52.647 -0.45173 35 18 4 0 0 0 0.033587 1 28590 28590 53.404 22.767 1 5069100 11846 10449 8094 8264 13670 13670 0.011223825231923001 FGAKSPKA 8 Unmodified _FGAKSPKA_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2325744628906 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 2.5363 1 2.5193 2.0193 3.0193 -0.017019 0 0 0 0.97444 1 1290 1290 0.69038 0 1 11847 3826 8095 8265 13671 13671 0.039341480428561226 FGALLCRLVL 10 Unmodified _FGALLCRLVL_ 0 0 0 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 ENSG00000139874|ENST00000267377|SSTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8915100097656 3 368.89145 1103.65252 1.4522 0.00053571 -1.2837 -0.00047356 0.16846 6.2145E-05 368.8905770202865 91.415 0.40739 85.239 85.028 85.435 -6.1757 49 22 3 0 0 0 0.55245 1 60404 60404 13.615 0.5724 1 18220000 11848 5196 8096 8266 13672 13672 0.10484129772953565 FGARTGPH 8 Unmodified _FGARTGPH_ 0 0 0 REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7175598144531 2 421.717019 841.419485 -0.56074 -0.00023647 0.6983 0.00029449 0.13757 5.8015E-05 421.71730907398256 16.902 0.17219 16.903 16.821 16.994 0.0010548 103 54 2 0 0 0 0.81007 1 8331 8331 0.6015 0 1 1570500 + 11849 26100 8097 8267 13673 13673 -0.007567909024714936 FGARTGPH 8 Unmodified _FGARTGPH_ 0 0 0 REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 421.717019 841.419485 0.01579 6.6589E-06 0.33998 0.00014338 0.35577 0.00015004 421.71723400091565 16.571 0.15745 16.577 16.473 16.63 0.0050564 -0.16321 -0.0001933 NaN 0.6015 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2674700 + 11850 26100 8097 8267 -0.007567909024714936 FGASCLAPSHF 11 Unmodified _FGASCLAPSHF_ 0 0 0 nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3 nc|ENSG00000187605|O43151-2|TET3 nc|ENSG00000187605|O43151-2|TET3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5123596191406 3 379.511298 1135.51206 0.54837 0.00020811 -0.18387 -6.9779E-05 0.36451 0.00013834 379.51115052643024 27.959 0.21598 27.913 27.797 28.013 -0.046408 16 7 3 0 0 0 0.69509 1 14408 14408 4.7159 1.1194 1 8710800 11851 9569 8098 8268 13674 13674 -0.05027073951282546 FGDCGSVS 8 Unmodified _FGDCGSVS_ 0 0 0 REV__ENST00000585652.5_1_19:2109366-2109738:-|nuORF REV__ENST00000585652.5_1_19:2109366-2109738:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1817932128906 2 386.152529 770.290504 NaN NaN NaN NaN NaN NaN NaN 33.395 1 33.236 32.736 33.736 -0.15918 0 0 0 0.97444 1 17417 17417 0.69038 0 1 + 11852 29100 8099 8269 13675 13675 -0.10382933647588288 FGDFYCMY 8 Unmodified _FGDFYCMY_ 0 0 0 ENST00000486074.2_1_10:60966594-61005348:+|nuORF;nc|ENSG00000165443|Q96FC7-2|PHYHIPL;ENSG00000165443|ENST00000373880|PHYHIPL ENST00000486074.2_1_10:60966594-61005348:+|nuORF ENST00000486074.2_1_10:60966594-61005348:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.1939086914062 2 523.193339 1044.37213 0.72385 0.00037871 1.4725 0.00077043 2.1964 0.0011491 523.1939913941937 43.725 0.54137 38.96 38.693 39.235 -4.7648 129 33 6 0 0 0 0.80143 1 26525 26525 5.7604 0.52976 1 78224000 11853 7338 8100 8270 13676 13676 -0.14828574279999884 FGDPHGEFWL 10 Unmodified _FGDPHGEFWL_ 0 0 0 nc|ENSG00000167772|Q9BY76-3|ANGPTL4;nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ENSG00000167772|ENST00000301455|ANGPTL4 nc|ENSG00000167772|Q9BY76-3|ANGPTL4 nc|ENSG00000167772|Q9BY76-3|ANGPTL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8034057617188 2 602.774731 1203.53491 0.43599 0.0002628 1.5309 0.00092282 1.9669 0.0011856 602.7756108034436 80.705 0.21336 80.762 80.677 80.89 0.057587 14 7 2 0 0 0 0.23489 1 44577 44577 7.9102 0 1 1095500 11854 7668 8101 8271 13677 13677 -0.058717315621379385 FGDPKKLLTQY 11 Unmodified _FGDPKKLLTQY_ 0 0 0 ENSG00000197172|ENST00000329342|MAGEA6 ENSG00000197172|ENST00000329342|MAGEA6 ENSG00000197172|ENST00000329342|MAGEA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3616943359375 2 655.36117 1308.70779 0.1736 0.00011377 0.0083962 5.5025E-06 0.18199 0.00011927 655.360849979446 57.941 0.423 51.913 51.698 52.121 -6.0275 36 23 2 0 0 0 0.4121 1 37168 37168 20.415 20.415 1 45022000 11855 9923 8102 8272 13678 13678 0.06578214774435764 FGELRLGKTIL 11 Unmodified _FGELRLGKTIL_ 0 0 0 ENST00000508708.1_1_5:122881219-122881564:+|nuORF ENST00000508708.1_1_5:122881219-122881564:+|nuORF ENST00000508708.1_1_5:122881219-122881564:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.256591796875 3 416.255446 1245.74451 NaN NaN NaN NaN NaN NaN NaN 109.44 1 103.26 102.76 103.76 -6.1757 0 0 0 0.94287 1 73090 73090 0.45452 0 1 11856 14564 8103 8273 13679 13679 0.13146511391005333 FGFDYCYW 8 Unmodified _FGFDYCYW_ 0 0 0 ENSG00000159433|ENST00000290607|STARD9;ENST00000563872.5_1_15:42867889-42930286:+|nuORF;nc|ENSG00000159433|Q9P2P6-2|STARD9;ENST00000564158.5_1_15:42867889-42955097:+|nuORF ENSG00000159433|ENST00000290607|STARD9 ENSG00000159433|ENST00000290607|STARD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7127075195312 2 550.712753 1099.41095 NaN NaN NaN NaN NaN NaN NaN 4.882 1 4.8091 4.3091 5.3091 -0.072869 0 0 0 0.97444 1 2416 2416 0 0 1 11857 6655 8104 8274 13680 13680 -0.1347752565400242 FGFLYLLTF 9 Unmodified _FGFLYLLTF_ 0 0 0 nc|ENSG00000285010|A0A2R8YFL7|OOSP4A nc|ENSG00000285010|A0A2R8YFL7|OOSP4A nc|ENSG00000285010|A0A2R8YFL7|OOSP4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8055419921875 2 560.807511 1119.60047 0.36442 0.00020437 -2.5128 -0.0014092 -2.1483 -0.0012048 560.8061360364231 78.642 0.20683 78.642 78.509 78.716 0 16 9 2 0 0 0 0.48152 1 43687 43687 8.5933 3.2964 1 402770 11858 16618 8105 8275 13681 13681 0.04545289630846128 FGFSFNAS 8 Unmodified _FGFSFNAS_ 0 0 0 ENSG00000196862|ENST00000408999|RGPD4 ENSG00000196862|ENST00000408999|RGPD4 ENSG00000196862|ENST00000408999|RGPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.6962585449219 2 438.697961 875.381368 NaN NaN NaN NaN NaN NaN NaN 18.5 1 18.523 18.023 19.023 0.023106 0 0 0 0.97444 1 9280 9280 2.5775 1.7838 1 11859 9876 8106 8276 13682 13682 -0.061307216078148485 FGGAKAAL 8 Unmodified _FGGAKAAL_ 0 0 0 REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF REV__ENST00000587125.1_1_17:58040633-58079710:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.7138366699219 2 367.713414 733.412274 NaN NaN NaN NaN NaN NaN NaN 48.632 1 43.236 42.736 43.736 -5.3961 0 0 0 0.97444 1 30311 30311 5.2307 0 1 + 11860 18603 8107 8277 13683 13683 0.03490476497074724 FGGDVQFHFF 10 Unmodified _FGGDVQFHFF_ 0 0 0 L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|114|3|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|114|3|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|114|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 600.775390625 2 600.777274 1199.53999 NaN NaN NaN NaN NaN NaN NaN 51.26 1 45.611 45.111 46.111 -5.649 0 0 0 0.66657 1 32244 32244 18.146 1.0335 1 11861 15952 8108 8278 13684 13684 -0.05179427699545158 FGGGGYGGGF 10 Unmodified _FGGGGYGGGF_ 0 0 0 REV__ENSG00000167768|ENST00000252244|KRT1 REV__ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.368896484375 1 875.368244 874.360967 1.2697 0.0011114 -0.17828 -0.00015606 1.0914 0.00095538 875.3680064515546 63.887 0.56292 57.712 57.355 57.918 -6.1757 80 30 3 0 0 0 0.046949 3 41268 41132;41268;41409 59.795 9.2203 1 125670000 + + 11862 16845 8109 8279 13685;13686;13687 13686 -0.081238922676107 FGGGGYGGGF 10 Unmodified _FGGGGYGGGF_ 0 0 0 REV__ENSG00000167768|ENST00000252244|KRT1 REV__ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.1882934570312 2 438.18776 874.360967 1.3659 0.00059851 0.1069 4.6842E-05 1.4728 0.00064535 438.1876481592457 63.817 0.50767 57.642 57.391 57.899 -6.1757 77 27 3 0 0 0 0.34789 2 41311 41184;41311 24.674 2.9272 1 72043000 + + 11863 16845 8109 8279 13688;13689 13689 -0.081238922676107 FGGGGYGGGF 10 Unmodified _FGGGGYGGGF_ 0 0 0 REV__ENSG00000167768|ENST00000252244|KRT1 REV__ENSG00000167768|ENST00000252244|KRT1 MSMS AL20221201_MKP_PDAC_01 4 438.1885070800781 2 438.18776 874.360967 NaN NaN NaN NaN NaN NaN NaN 64.042 1 57.866 57.366 58.366 -6.1757 0 0 0 0.6668 1 41457 41457 18.135 2.2878 1 + + 11864 16845 8109 8279 13690 13690 -0.081238922676107 FGGGGYGGGF 10 Unmodified _FGGGGYGGGF_ 0 0 0 REV__ENSG00000167768|ENST00000252244|KRT1 REV__ENSG00000167768|ENST00000252244|KRT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 438.1885070800781 2 438.18776 874.360967 1.3659 0.00059851 0.1069 4.6842E-05 1.4728 0.00064535 438.1876481592457 63.817 0.50767 57.642 57.391 57.899 -6.1757 77 27 3 0 0 0 0.22327 1 41457 41457 18.135 2.2878 1 72043000 + + 11865 16845 8109 8279 13691 13691 -0.081238922676107 FGGKLGFF 8 Unmodified _FGGKLGFF_ 0 0 0 nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7411804199219 2 436.736889 871.459225 0.3867 0.00016888 3.276 0.0014308 3.6627 0.0015996 436.73993344513025 38.756 0.18159 38.767 38.658 38.84 0.011452 12 8 2 0 0 0 0.67481 1 20619 20619 19.439 2.3524 1 2929600 11866 6831 8110 8280 13692 13692 0.01835336048247882 FGGKVGVKV 9 Unmodified _FGGKVGVKV_ 0 0 0 REV__nc|ENSG00000106069|P52757-5|CHN2 REV__nc|ENSG00000106069|P52757-5|CHN2 MSMS AL20221201_MKP_PDAC_01 4 445.7763977050781 2 445.776545 889.538538 NaN NaN NaN NaN NaN NaN NaN 93.001 1 86.825 86.325 87.325 -6.1757 0 0 0 0.26667 1 61527 61527 26.884 3.7352 1 + 11867 29553 8111 8281 13693 13693 0.08934983002382069 FGGQGTKGKDP 11 Unmodified _FGGQGTKGKDP_ 0 0 0 nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF nc|ENSG00000105875|A4D1P6-2|WDR91 nc|ENSG00000105875|A4D1P6-2|WDR91 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2786254882812 2 546.277638 1090.54072 0.52713 0.00028796 -0.08442 -4.6117E-05 0.44271 0.00024184 546.2776695168282 28.331 0.60008 25.183 24.915 25.515 -3.1482 85 31 4 0 0 0 0.020698 2 15701 15701;15822 57.249 9.5004 1 94005000 11868 2374 8112 8282 13694;13695 13694 -0.0009263305048534676 FGGVRVVV 8 Unmodified _FGGVRVVV_ 0 0 0 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 MSMS AL20221201_MKP_PDAC_01 4 416.756591796875 2 416.755613 831.496673 NaN NaN NaN NaN NaN NaN NaN 104.7 1 98.52 98.02 99.02 -6.1757 0 0 0 0.97444 1 70095 70095 0.79363 0 1 11869 2189 8113 8283 13696 13696 0.07418427313859866 FGHLFFMQVI 10 Unmodified _FGHLFFMQVI_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1 REV__ENSG00000280021|ENST00000624103|OR51F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5507507324219 3 413.551205 1237.63179 -0.52933 -0.00021891 -0.58578 -0.00024225 -1.1151 -0.00046116 413.55084095038956 19.841 0.1812 19.841 19.746 19.927 0 42 17 3 0 0 0 0.68844 1 9919 9919 4.1895 0.60244 1 3497900 + 11870 24679 8114 8284 13697 13697 0.022475393932836596 FGHLMESKL 9 Unmodified _FGHLMESKL_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.5194702148438 3 354.519794 1060.53755 0.076387 2.7081E-05 -1.1609 -0.00041155 -1.0845 -0.00038447 354.51940256520857 23.885 0.18261 23.906 23.762 23.944 0.021185 14 7 2 0 0 0 0.43463 1 12275 12275 7.1017 0.47135 1 3818700 11871 6854 8115 8285 13698 13698 0.00970400571168284 FGHLREEMVW 10 Unmodified _FGHLREEMVW_ 0 0 0 REV__ENST00000564160.1_1_16:2722459-2722856:-|nuORF REV__ENST00000564160.1_1_16:2722459-2722856:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8820190429688 3 435.213252 1302.61793 0.24572 0.00010694 1.7519 0.00076243 1.9976 0.00086937 435.2141831148088 17.581 0.075741 17.586 17.562 17.638 0.0050564 7 5 2 0 0 0 0.24007 1 8891 8891 0.15932 0.036457 1 510340 + 11872 28889 8116 8286 13699 13699 -0.0212773810580984 FGHSSSLTY 9 Unmodified _FGHSSSLTY_ 0 0 0 ENSG00000136866|ENST00000374227|ZFP37;nc|ENSG00000136866|Q9Y6Q3-3|ZFP37;nc|ENSG00000136866|Q9Y6Q3-2|ZFP37 ENSG00000136866|ENST00000374227|ZFP37 ENSG00000136866|ENST00000374227|ZFP37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7289733886719 2 499.732532 997.45051 0.65576 0.00032771 -1.829 -0.00091401 -1.1732 -0.0005863 499.73117555512357 38.567 0.75916 38.567 38.376 39.135 0 67 38 4 0 0 0 0.2001 1 20789 20789 23.148 5.0134 1 13854000 11873 4870 8117 8287 13700 13700 -0.04831682378903679 FGKNIEVVII 10 Unmodified _FGKNIEVVII_ 0 0 0 ENST00000510228.1_1_5:94884403-94886388:-|nuORF;ENST00000358746.6_1_5:94884403-94890691:-|nuORF ENST00000510228.1_1_5:94884403-94886388:-|nuORF ENST00000510228.1_1_5:94884403-94886388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8986206054688 3 377.897258 1130.66995 0.021449 8.1054E-06 3.3847 0.0012791 3.4061 0.0012872 377.89823985729953 34.825 0.43086 34.852 34.733 35.164 0.027401 39 19 3 0 0 0 0.67046 1 18473 18473 6.1918 0.89496 1 3358500 11874 12133 8118 8288 13701 13701 0.1098374857961062 FGLATKVEY 9 Unmodified _FGLATKVEY_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2769775390625 2 514.276575 1026.5386 0.7799 0.00040108 -3.0851 -0.0015866 -2.3052 -0.0011855 514.7755211875593 50.253 0.36524 49.86 49.627 49.992 -0.3923 48 17 4 0 0 0 0.021948 1 27072 27072 61.602 23.628 1 9571300 11875 7539 8119 8289 13702 13702 0.026389382117031346 FGLCYDYKI 9 Unmodified _FGLCYDYKI_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2703857421875 2 561.270435 1120.52632 0.36793 0.00020651 -2.9869 -0.0016765 -2.619 -0.00147 561.270345449844 39.684 0.28149 39.684 39.53 39.812 0 30 13 3 0 0 0 0.32871 1 21294 21294 15.847 2.3393 1 3698000 11876 16496 8120 8290 13703 13703 -0.029124215229785477 FGLVWHEI 8 Unmodified _FGLVWHEI_ 0 0 0 ENSG00000169313|ENST00000302632|P2RY12 ENSG00000169313|ENST00000302632|P2RY12 ENSG00000169313|ENST00000302632|P2RY12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2779846191406 2 500.766178 999.517802 0.38254 0.00019156 -1.8977 -0.00095031 -1.5152 -0.00075875 500.7652610638153 78.56 0.50529 78.612 78.327 78.832 0.052452 33 20 3 0 0 0 8.7369 1 43311 43311 11.114 5.354 1 4644600 11877 7864 8121 8291 13704 13704 0.018023926227101583 FGLYLWDYLE 10 Unmodified _FGLYLWDYLE_ 0 0 0 REV__nc|ENSG00000050130|Q9P055-3|JKAMP REV__nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5526733398438 3 440.216657 1317.62814 0.036076 1.5881E-05 2.2399 0.00098602 2.2759 0.0010019 440.2176952863104 36.472 0.18704 36.493 36.372 36.559 0.021545 15 8 3 0 0 0 0.6966 1 19307 19307 3.3196 0.47636 1 2816600 + 11878 17257 8122 8292 13705 13705 -0.017968518995530758 FGNHHYYIF 9 Unmodified _FGNHHYYIF_ 0 0 0 ENSG00000177054|ENST00000446113|ZDHHC13;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF ENSG00000177054|ENST00000446113|ZDHHC13 ENSG00000177054|ENST00000446113|ZDHHC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.276611328125 2 599.277441 1196.54033 0.50879 0.00030491 -1.9306 -0.001157 -1.4218 -0.00085205 599.2761918916726 87.878 0.34315 87.374 87.239 87.582 -0.50423 27 15 2 0 0 0 0.58865 1 48033 48033 2.0598 0.40713 1 1086800 11879 8652 8123 8293 13706 13706 -0.050080079796771315 FGNRMEEL 8 Unmodified _FGNRMEEL_ 0 0 0 ENST00000537850.1_1_14:22887419-22887566:-|nuORF ENST00000537850.1_1_14:22887419-22887566:-|nuORF ENST00000537850.1_1_14:22887419-22887566:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2349243164062 2 498.234384 994.454216 0.60508 0.00030147 0.61038 0.00030411 1.2155 0.00060558 498.2344953746289 81.935 0.34245 81.439 81.287 81.629 -0.4952 19 12 2 0 0 0 0.80311 1 44862 44862 4.756 1.8668 1 603030 11880 14997 8124 8294 13707 13707 -0.0432333587669973 FGPLSQFQK 9 Unmodified _FGPLSQFQK_ 0 0 0 REV__ENSG00000164935|ENST00000297581|DCSTAMP REV__ENSG00000164935|ENST00000297581|DCSTAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2825317382812 2 526.282192 1050.54983 1.2479 0.00065673 -4.2139 -0.0022177 -2.9661 -0.001561 526.2795945821417 46.651 0.36305 46.617 46.431 46.794 -0.033417 37 17 3 0 0 0 0.070838 1 25059 25059 39.957 1.7818 1 3430200 + 11881 21962 8125 8295 13708 13708 0.026577603058512977 FGPYQKALR 9 Unmodified _FGPYQKALR_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.302978515625 2 540.303458 1078.59236 -0.20238 -0.00010935 0.31457 0.00016996 0.11219 6.0616E-05 540.3034975353645 41.558 0.23749 41.556 41.422 41.66 -0.0017929 24 10 3 0 0 0 0.34999 1 22206 22206 14.838 14.838 1 7048800 11882 6056 8126 8296 13709 13709 0.05621155434073444 FGRAPFISVS 10 Unmodified _FGRAPFISVS_ 0 0 0 REV__ENST00000360270.6_1_X:64960701-64960776:+|nuORF REV__ENST00000360270.6_1_X:64960701-64960776:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2013854980469 3 360.86607 1079.57638 0.070094 2.5295E-05 1.6111 0.0005814 1.6812 0.0006067 360.86633383711165 31.762 0.3634 31.633 31.454 31.818 -0.12915 30 14 3 0 0 0 0.67033 1 16598 16598 5.7834 2.1869 1 3152700 + 11883 25908 8127 8297 13710 13710 0.039774491971684256 FGRERERSMKS 11 Unmodified _FGRERERSMKS_ 0 0 0 ENST00000273480.3_1_3:141464558-141464642:+|nuORF ENST00000273480.3_1_3:141464558-141464642:+|nuORF ENST00000273480.3_1_3:141464558-141464642:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.5904846191406 3 461.570098 1381.68847 0.70281 0.0003244 0.82996 0.00038308 1.5328 0.00070748 461.5706026759802 58.599 0.28592 58.538 58.414 58.699 -0.060722 42 14 4 0 0 0 0.30139 1 31994 31994 2.6312 1.039 1 7486500 11884 11379 8128 8298 13711 13711 0.012889352118463648 FGRIDRDSY 9 Unmodified _FGRIDRDSY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.852783203125 3 376.8526 1127.53597 -0.57161 -0.00021541 0.37282 0.0001405 -0.19879 -7.4913E-05 376.85263933487795 26.659 0.27398 26.659 26.508 26.782 0 36 12 4 0 0 0 0.34134 1 13675 13675 19.626 12.996 1 6895700 11885 5139 8129 8299 13712 13712 -0.02269517193235515 FGRIDRDSY 9 Unmodified _FGRIDRDSY_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.1884460449219 3 376.8526 1127.53597 1.0542 0.0003973 -1.2873 -0.00048514 -0.2331 -8.7844E-05 376.85178550222395 29.87 0.45099 26.568 26.443 26.894 -3.3016 30 21 2 0 0 0 0.024507 1 16949 16949 48.561 25.903 1 42105000 11886 5139 8129 8299 13713 13713 -0.02269517193235515 FGRRKSRQ 8 Unmodified _FGRRKSRQ_ 0 0 0 ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN ENSG00000197471|ENST00000652691|SPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8020629882812 2 517.801949 1033.58934 NaN NaN NaN NaN NaN NaN NaN 103.72 1 103.67 103.17 104.17 -0.048386 0 0 0 0.97444 1 57598 57598 0.69038 0 1 11887 9959 8130 8300 13714 13714 0.07389325099939015 FGSDVVAQF 9 Unmodified _FGSDVVAQF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2373962402344 2 485.23745 968.460347 0.2475 0.00012009 -0.049547 -2.4042E-05 0.19795 9.6053E-05 485.2373457260971 62.952 0.49161 62.952 62.704 63.195 0 52 20 3 0 0 0 0.012148 2 35157 35048;35157 74.423 38.379 1 10751000 11888 6041 8131 8301 13715;13716 13716 -0.025144943735199377 FGSDVVAQF 9 Unmodified _FGSDVVAQF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.4697265625 1 969.467623 968.460347 0.14375 0.00013936 1.4322 0.0013885 1.576 0.0015279 969.4686141945076 62.959 0.27315 62.959 62.8 63.073 0 21 11 2 0 0 0 0.087258 1 35095 35095 36.044 1.9418 1 1610600 11889 6041 8131 8301 13717 13717 -0.025144943735199377 FGSDVVAQF 9 Unmodified _FGSDVVAQF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2376098632812 2 485.23745 968.460347 0.42845 0.0002079 0.18801 9.1231E-05 0.61647 0.00029913 485.23749727238805 63.53 0.39221 63.044 62.841 63.233 -0.48617 49 17 4 0 0 0 0.016184 2 34690 34593;34690 67.344 30.165 1 11130000 11890 6041 8131 8301 13718;13719 13719 -0.025144943735199377 FGSDVVAQF 9 Unmodified _FGSDVVAQF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 969.4699096679688 1 969.467623 968.460347 0.20479 0.00019854 0.51463 0.00049892 0.71943 0.00069746 969.4682799487426 63.505 0.26539 63.019 62.905 63.171 -0.48617 20 11 2 0 0 0 0.06187 2 34601 34601;34701 42.095 15.211 1 1620200 11891 6041 8131 8301 13720;13721 13720 -0.025144943735199377 FGSDVVAQF 9 Unmodified _FGSDVVAQF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2380676269531 2 485.23745 968.460347 1.07 0.00051921 -0.22604 -0.00010968 0.84396 0.00040952 485.2373741285082 70.729 0.48648 64.554 64.262 64.749 -6.1757 54 25 3 0 0 0 0.0090851 2 46265 46146;46265 85.357 40.95 1 60074000 11892 6041 8131 8301 13722;13723 13723 -0.025144943735199377 FGSFCPTF 8 Unmodified _FGSFCPTF_ 0 0 0 ENST00000336095.10_1_20:3913450-3913603:-|nuORF ENST00000336095.10_1_20:3913450-3913603:-|nuORF ENST00000336095.10_1_20:3913450-3913603:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.1969299316406 2 453.196739 904.378925 NaN NaN NaN NaN NaN NaN NaN 75.627 1 75.15 74.65 75.65 -0.47714 0 0 0 0.97348 1 41400 41400 5.7604 0 1 11893 11904 8132 8302 13724 13724 -0.0770889333713285 FGSGAGSSSF 10 Unmodified _FGSGAGSSSF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 903.3847045898438 1 903.384288 902.377011 0.66928 0.00060461 -0.38912 -0.00035153 0.28015 0.00025309 903.3841115137135 42.131 0.45877 37.446 37.173 37.632 -4.6846 50 28 2 0 0 0 0.0022539 2 25411 25280;25411 107.19 44.614 1 23481000 + 11894 165 8133 8303 13725;13726 13726 -0.07808230821376583 FGSGAGSSSF 10 Unmodified _FGSGAGSSSF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.1959533691406 2 452.195782 902.377011 0.85809 0.00038802 0.048682 2.2014E-05 0.90677 0.00041004 452.19573853584603 42.105 0.3788 37.42 37.234 37.613 -4.6846 42 23 2 0 0 0 0.19662 1 25392 25392 34.102 12.565 1 16154000 + 11895 165 8133 8303 13727 13727 -0.07808230821376583 FGSHDYYW 8 Unmodified _FGSHDYYW_ 0 0 0 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7193603515625 2 537.719424 1073.4243 0.36679 0.00019723 0.7233 0.00038893 1.0901 0.00058616 537.7198818670612 75.183 0.36524 75.183 75.004 75.369 0 30 21 2 0 0 0 0.80975 1 41826 41826 0.79363 0 1 695990 11896 5861 8134 8304 13728 13728 -0.1094795155038355 FGSVRALH 8 Unmodified _FGSVRALH_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3;nc|ENSG00000005187|Q53FZ2-2|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7488403320312 2 443.748319 885.482085 0.34774 0.00015431 -0.14715 -6.5298E-05 0.20059 8.9012E-05 443.7481883181301 26.198 0.3609 23.247 23.078 23.439 -2.9511 49 20 3 0 0 0 0.6895 2 14335 14335;14454 18.135 1.1927 1 39302000 11897 300 8135 8305 13729;13730 13729 0.03476355165696532 FGSWHGLDLT 10 Unmodified _FGSWHGLDLT_ 0 0 0 ENST00000526132.5_1_1:52552401-52552539:+|nuORF ENST00000526132.5_1_1:52552401-52552539:+|nuORF ENST00000526132.5_1_1:52552401-52552539:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7726440429688 2 566.774731 1131.53491 1.084 0.00061437 -1.039 -0.0005889 0.044945 2.5474E-05 566.7739617362607 59.758 1.9733 53.643 53.357 55.33 -6.1147 380 105 6 0 0 0 0.35903 1 39535 39535 24.021 0 1 8300199999.999999 11898 14808 8136 8306 13731 13731 -0.025597315621553207 FGSYEKMEHH 10 Unmodified _FGSYEKMEHH_ 0 0 0 REV__ENST00000505813.1_1_5:110284092-110284650:-|nuORF REV__ENST00000505813.1_1_5:110284092-110284650:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.1854858398438 3 422.185362 1263.53426 NaN NaN NaN NaN NaN NaN NaN 45.808 1 45.78 45.28 46.28 -0.028011 0 0 0 0.94014 1 24626 24626 3.3196 0 1 + 11899 17138 8137 8307 13732 13732 -0.08696894273521139 FGTILDPKIRE 11 Unmodified _FGTILDPKIRE_ 0 0 0 nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7-2|ADGRF2P nc|ENSG00000164393|Q8IZF7-2|ADGRF2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8662719726562 2 644.86662 1287.71869 1.3175 0.00084964 0.60212 0.00038829 1.9197 0.0012379 644.8668886680202 70.931 0.66348 70.967 70.612 71.275 0.035507 40 29 2 0 0 0 0.49694 1 39129 39129 16.566 8.4104 1 2601700 11900 16341 8138 8308 13733 13733 0.08633617148689154 FGVEFLEII 9 Unmodified _FGVEFLEII_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7928466796875 2 533.794601 1065.57465 0.49768 0.00026566 -3.303 -0.0017631 -2.8053 -0.0014975 533.7925764826869 71.874 0.20341 71.398 71.266 71.469 -0.47609 20 7 4 0 0 0 0.37804 1 39319 39319 13.508 0.97634 1 2626200 + + 11901 16861 8139 8309 13734 13734 0.044483953885674055 FGVIDMVMLFI 11 Unmodified _FGVIDMVMLFI_ 0 0 0 REV__nc|ENSG00000166736|P46098-3|HTR3A REV__nc|ENSG00000166736|P46098-3|HTR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8414916992188 2 642.840171 1283.66579 0.73154 0.00047026 0.73267 0.00047099 1.4642 0.00094125 642.8402623568 102.19 0.094406 96.016 95.957 96.052 -6.1757 6 3 2 0 0 0 0.48615 1 68595 68595 17.113 3.2068 1 3553000 + 11902 22144 8140 8310 13735 13735 0.035301997700344145 FGVPGPLTLGN 11 Unmodified _FGVPGPLTLGN_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8656005859375 3 357.865958 1070.57605 -0.046734 -1.6725E-05 -1.1331 -0.0004055 -1.1798 -0.00042222 357.8656001036014 16.134 0.23178 16.139 16.043 16.275 0.0050545 31 18 2 0 0 0 0.71618 1 8069 8069 2.4348 0.95288 1 638250 + 11903 17191 8141 8311 13736 13736 0.04358029477339187 FGVPGPLTLGN 11 Unmodified _FGVPGPLTLGN_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.865958 1070.57605 -0.046734 -1.6725E-05 -1.1331 -0.0004055 -1.1798 -0.00042222 357.8656001036014 16.134 0.23178 16.139 16.043 16.275 0.0050545 0 0 NaN 2.4348 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 638250 + 11904 17191 8141 8311 0.04358029477339187 FGYGYTAPPY 10 Unmodified _FGYGYTAPPY_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.7962036132812 2 568.258382 1134.50221 0.94892 0.00053923 -0.10864 -6.1734E-05 0.84029 0.0004775 568.2578301890283 66.106 0.505 59.93 59.709 60.214 -6.1757 69 28 3 0 0 0 0.22507 1 43162 43162 7.2892 1.0834 1 29154000 11905 5318 8142 8312 13737 13737 -0.05965938685017136 FHADIFRSF 9 Unmodified _FHADIFRSF_ 0 0 0 ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4 ENST00000480590.1_1_1:227921003-227922761:-|nuORF ENST00000480590.1_1_1:227921003-227922761:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2294921875 2 570.285266 1138.55598 NaN NaN NaN NaN NaN NaN NaN 92.615 1 92.156 91.656 92.656 -0.45897 0 0 0 0.84369 1 50618 50618 2.3027 0 1 11906 1327 8143 8313 13738 13738 -0.0077572146265083575 FHATEIHF 8 Unmodified _FHATEIHF_ 0 0 0 REV__ENSG00000153975|ENST00000368576|ZUP1 REV__ENSG00000153975|ENST00000368576|ZUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2463989257812 2 501.245609 1000.47667 -0.44638 -0.00022374 0.017977 9.011E-06 -0.4284 -0.00021473 501.2458376190378 32.489 0.1925 32.36 32.245 32.437 -0.12915 12 8 2 0 0 0 0.64035 1 16926 16926 22.453 0 1 1897800 + 11907 21199 8144 8314 13739 13739 -0.023553684167723077 FHAVQSKG 8 Unmodified _FHAVQSKG_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230778340-230804693:+|nuORF nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2330932617188 2 437.232502 872.450451 -0.42467 -0.00018568 2.8733 0.0012563 2.4486 0.0010706 437.2340841058162 34.66 0.28728 34.66 34.54 34.827 0 20 14 2 0 0 0 0.6895 1 18255 18255 18.135 0 1 2011400 11908 4740 8145 8315 13740 13740 0.009123624117705731 FHDAFMFF 8 Unmodified _FHDAFMFF_ 0 0 0 REV__ENSG00000144671|ENST00000448498|SLC22A14 REV__ENSG00000144671|ENST00000448498|SLC22A14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3351440429688 2 531.231113 1060.44767 1.0435 0.00055435 -3.2906 -0.0017481 -2.247 -0.0011937 531.2293262726123 98.485 0.11438 92.309 92.237 92.352 -6.1757 9 7 2 0 0 0 8.7369 1 65318 65318 6.3541 5.9534 1 8824100 + 11909 20724 8146 8316 13741 13741 -0.08013229037419478 FHDIFDKVF 9 Unmodified _FHDIFDKVF_ 0 0 0 ENSG00000144362|ENST00000359744|PHOSPHO2 ENSG00000144362|ENST00000359744|PHOSPHO2 ENSG00000144362|ENST00000359744|PHOSPHO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2950439453125 2 584.295299 1166.57605 0.57404 0.00033541 -0.83498 -0.00048787 -0.26094 -0.00015247 584.2949298070088 47.21 0.73264 46.858 46.331 47.064 -0.3526 66 36 3 0 0 0 0.28047 1 25068 25068 18.135 3.2967 1 5919200 11910 5602 8147 8317 13742 13742 -0.0005797052267553227 FHDIGLNAPF 10 Unmodified _FHDIGLNAPF_ 0 0 0 REV__ENST00000504782.5_1_4:2492139-2492247:+|nuORF REV__ENST00000504782.5_1_4:2492139-2492247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5256652832031 3 377.525825 1129.55564 0.26812 0.00010122 -0.61449 -0.00023199 -0.34637 -0.00013077 377.52569512278484 39.461 0.22655 39.473 39.323 39.55 0.011452 17 10 3 0 0 0 0.5905 1 21003 21003 6.6304 0 1 2883700 + 11911 28061 8148 8318 13743 13743 -0.003951411825028117 FHDIGLNAPF 10 Unmodified _FHDIGLNAPF_ 0 0 0 REV__ENST00000504782.5_1_4:2492139-2492247:+|nuORF REV__ENST00000504782.5_1_4:2492139-2492247:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5267028808594 3 377.525825 1129.55564 1.1217 0.00042348 0.72888 0.00027517 1.8506 0.00069865 377.5259733326019 44.445 0.40439 39.593 39.371 39.775 -4.852 74 30 3 0 0 0 0.5905 1 27223 27223 6.6304 1.3335 1 67541000 + 11912 28061 8148 8318 13744 13744 -0.003951411825028117 FHDLADTLSC 10 Unmodified _FHDLADTLSC_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5024108886719 3 374.50258 1120.48591 NaN NaN NaN NaN NaN NaN NaN 56.822 1 56.822 56.322 57.322 0 0 0 0 0.7417 1 31611 31611 12.873 5.2637 1 + 11913 21942 8149 8319 13745 13745 -0.06951387913386498 FHDLPGHVLL 10 Unmodified _FHDLPGHVLL_ 0 0 0 REV__nc|ENSG00000277399|Q6PRD1|GPR179 REV__nc|ENSG00000277399|Q6PRD1|GPR179 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2135620117188 3 383.213469 1146.61858 0.2474 9.4807E-05 0.060726 2.3271E-05 0.30813 0.00011808 383.21350224882565 62.111 0.33249 62.078 61.906 62.239 -0.032787 62 16 5 0 0 0 0.50944 1 33985 33985 9.544 0 1 81760000 + 11914 24663 8150 8320 13746 13746 0.051134246055880794 FHDLVSSKCF 10 Unmodified _FHDLVSSKCF_ 0 0 0 REV__nc|ENSG00000237621|Q8NGU1|OR9A1P REV__nc|ENSG00000237621|Q8NGU1|OR9A1P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2510986328125 2 591.784241 1181.55393 0.35139 0.00020795 -1.0022 -0.0005931 -0.65084 -0.00038516 591.7835116527846 53.423 0.23832 53.423 53.327 53.566 0 15 10 2 0 0 0 0.23227 1 29621 29621 10.824 2.9138 1 2024400 + 11915 29960 8151 8321 13747 13747 -0.02958518262744292 FHDMELIHSLR 11 Unmodified _FHDMELIHSLR_ 0 0 0 REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF REV__ENST00000462349.5_1_21:44473992-44479496:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3525390625 2 699.353354 1396.69215 NaN NaN NaN NaN NaN NaN NaN 84.458 1 83.959 83.459 84.459 -0.49961 0 0 0 0.92234 1 46218 46218 6.2058 2.9245 1 + 11916 21521 8152 8322 13748 13748 0.009676049857262115 FHDVAGDIF 9 Unmodified _FHDVAGDIF_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.741943359375 2 510.742899 1019.47125 0.63015 0.00032184 -1.8263 -0.00093279 -1.1962 -0.00061094 511.24484801016877 57.492 0.25118 57.492 57.281 57.532 0 23 10 4 0 0 0 0.23158 1 31996 31996 20.454 5.8719 1 1619100 11917 6702 8153 8323 13749 13749 -0.037710919992491654 FHDVAGDIF 9 Unmodified _FHDVAGDIF_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7420043945312 2 510.742899 1019.47125 0.13343 6.8148E-05 1.5643 0.00079893 1.6977 0.00086708 510.7431430277055 57.989 0.22859 57.5 57.369 57.598 -0.48974 15 10 3 0 0 0 0.32871 1 31557 31557 15.847 6.4997 1 1265200 11918 6702 8153 8323 13750 13750 -0.037710919992491654 FHDVDLVP 8 Unmodified _FHDVDLVP_ 0 0 0 ENST00000460321.5_1_3:118935188-118955715:-|nuORF;ENSG00000121578|ENST00000393765|B4GALT4 ENST00000460321.5_1_3:118935188-118955715:-|nuORF ENST00000460321.5_1_3:118935188-118955715:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2392883300781 2 471.239993 940.465432 0.54963 0.00025901 -0.64612 -0.00030448 -0.096488 -4.5469E-05 471.2396224984445 84.576 0.41253 84.077 83.932 84.344 -0.49961 26 18 2 0 0 0 0.77907 1 46345 46345 10.183 0 1 1861700 11919 3588 8154 8324 13751 13751 -0.007181905109177933 FHDVQNLVY 9 Unmodified _FHDVQNLVY_ 0 0 0 REV__ENSG00000027847|ENST00000029410|B4GALT7 REV__ENSG00000027847|ENST00000029410|B4GALT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.783447265625 2 567.782556 1133.55056 0.65468 0.00037172 -0.23373 -0.00013271 0.42096 0.00023901 567.7828002630566 40.373 0.25678 40.076 39.942 40.199 -0.29716 28 11 4 0 0 0 0.1773 1 21322 21322 25.399 2.663 1 6227400 + 11920 17134 8155 8325 13752 13752 -0.01087445045095592 FHEDEEKNKPY 11 Unmodified _FHEDEEKNKPY_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7559204101562 3 479.221129 1434.64156 0.13506 6.4724E-05 0.19926 9.5487E-05 0.33432 0.00016021 479.2204971323378 38.16 0.30581 37.889 37.802 38.108 -0.27133 16 13 2 0 0 0 0.30558 1 20185 20185 2.4348 0 1 979680 + 11921 22602 8156 8326 13753 13753 -0.05837645858287033 FHEDIWMWL 9 Unmodified _FHEDIWMWL_ 0 0 0 REV__ENSG00000256797|ENST00000535540|KLRF2 REV__ENSG00000256797|ENST00000535540|KLRF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.1984558105469 3 426.198831 1275.57467 NaN NaN NaN NaN NaN NaN NaN 19.072 1 19.095 18.595 19.595 0.023106 0 0 0 0.85798 1 9600 9600 0.23584 0 1 + 11922 24558 8157 8327 13754 13754 -0.05209927883106502 FHEIRPRA 8 Unmodified _FHEIRPRA_ 0 0 0 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.247802734375 2 513.2856 1024.55665 0.99104 0.00050869 -2.0847 -0.00107 -1.0937 -0.00056136 513.2836328441306 57.257 0.29747 57.191 57.14 57.438 -0.066036 18 14 2 0 0 0 8.7369 1 31240 31240 10.183 3.8293 1 1771700 11923 9356 8158 8328 13755 13755 0.045351179770932504 FHEQRDCDEHN 11 Unmodified _FHEQRDCDEHN_ 0 0 0 ENSG00000101435|ENST00000376979|CST9L ENSG00000101435|ENST00000376979|CST9L ENSG00000101435|ENST00000376979|CST9L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 715.2833862304688 2 715.281114 1428.54768 NaN NaN NaN NaN NaN NaN NaN 58.144 1 58.084 57.584 58.584 -0.060719 0 0 0 0.94313 1 31662 31662 0.26902 0.26902 1 11924 1965 8159 8329 13756 13756 -0.14945688232182874 FHETPLIIY 9 Unmodified _FHETPLIIY_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;ENST00000462389.1_1_20:33231889-33264889:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.804931640625 2 566.8055 1131.59645 1.317 0.00074647 -0.28433 -0.00016116 1.0326 0.00058531 566.8053335362666 90.543 1.0257 84.367 83.868 84.894 -6.1757 183 60 4 0 0 0 0.078314 1 59565 59565 50.855 2.5092 1 235020000 11925 1972 8160 8330 13757 13757 0.03591200137157102 FHEVPLKF 8 Unmodified _FHEVPLKF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7810363769531 2 508.781828 1015.5491 0.97123 0.00049414 -0.3863 -0.00019654 0.58493 0.0002976 508.78149988185214 57.315 0.23632 57.249 57.161 57.397 -0.066036 19 11 2 0 0 0 0.15594 1 31214 31214 85.272 53.155 1 3023700 11926 4099;14137 8161 8331 13758 13758 0.04194965656813565 FHFENDLY 8 Unmodified _FHFENDLY_ 0 0 0 ENST00000527338.1_1_6:136570093-136570225:-|nuORF ENST00000527338.1_1_6:136570093-136570225:-|nuORF ENST00000527338.1_1_6:136570093-136570225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7401733398438 2 542.740357 1083.46616 -0.85186 -0.00046234 -0.04288 -2.3273E-05 -0.89474 -0.00048561 542.7402924908736 77.513 0.34158 77.03 76.848 77.189 -0.4826 29 16 2 0 0 0 0.80624 1 42483 42483 2.8892 0 1 3100300 11927 14832 8162 8332 13759 13759 -0.07223395861865356 FHFEPNEY 8 Unmodified _FHFEPNEY_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7335205078125 2 541.732532 1081.45051 0.85127 0.00046116 0.09141 4.952E-05 0.94268 0.00051068 541.732607446458 70.532 0.30967 64.357 64.186 64.496 -6.1757 20 16 2 0 0 0 0.77186 1 46124 46124 10.824 0.64053 1 18667000 11928 9540 8163 8333 13760 13760 -0.08695682378902347 FHFGADTSF 9 Unmodified _FHFGADTSF_ 0 0 0 REV__nc|ENSG00000150093|P05556-2|ITGB1 REV__nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7274780273438 2 514.727249 1027.43995 0.49662 0.00025562 -0.65048 -0.00033482 -0.15386 -7.9198E-05 514.7268655978047 64.594 0.36568 64.109 63.887 64.253 -0.48512 34 16 3 0 0 0 0.39863 1 35226 35226 12.532 12.532 1 3935500 + 11929 21018 8164 8334 13761 13761 -0.0726766503332783 FHFGSRLL 8 Unmodified _FHFGSRLL_ 0 0 0 ENST00000423100.5_1_9:131901699-131901777:+|nuORF ENST00000423100.5_1_9:131901699-131901777:+|nuORF ENST00000423100.5_1_9:131901699-131901777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7727355957031 2 488.771794 975.529036 0.21618 0.00010566 2.7776 0.0013576 2.9938 0.0014633 488.77302234633726 87.583 0.29816 87.583 87.398 87.696 0 14 13 2 0 0 0 0.80624 1 48526 48526 2.8892 0 1 250960 11930 13127 8165 8335 13762 13762 0.040292147168543124 FHFKKWDF 8 Unmodified _FHFKKWDF_ 0 0 0 REV__ENSG00000167910|ENST00000301645|CYP7A1 REV__ENSG00000167910|ENST00000301645|CYP7A1 MSMS AL20221201_MKP_PDAC_01 4 385.1991577148438 3 385.53091 1153.5709 NaN NaN NaN NaN NaN NaN NaN 50.7 1 45.051 44.551 45.551 -5.649 0 0 0 0.9706 1 31842 31842 4.3292 1.257 1 + 11931 22263 8166 8336 13763 13763 0.0002577040536380082 FHFKPNEYFK 10 Unmodified _FHFKPNEYFK_ 0 0 0 nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2 nc|ENSG00000186462|Q9ULW6-2|NAP1L2 nc|ENSG00000186462|Q9ULW6-2|NAP1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8980407714844 3 452.896029 1355.66626 NaN NaN NaN NaN NaN NaN NaN 39.06 1 39.06 38.56 39.56 0 0 0 0 0.71157 1 20908 20908 14.218 9.5023 1 11932 9477 8167 8337 13764 13764 0.00265078805750818 FHFQISNPEF 10 Unmodified _FHFQISNPEF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5370178222656 3 422.536501 1264.58767 1.4002 0.00059163 -0.65117 -0.00027514 0.74902 0.00031649 422.5363413061412 89.726 0.25084 83.55 83.47 83.721 -6.1757 23 13 2 0 0 0 0.5802 1 59269 59269 12.175 2.6308 1 7856200 11933 3756 8168 8338 13765 13765 -0.03403773499348972 FHFWLQFI 8 Unmodified _FHFWLQFI_ 0 0 0 REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2951049804688 2 569.297645 1136.58074 -0.023265 -1.3245E-05 -2.5322 -0.0014416 -2.5554 -0.0014548 569.2957833705294 53.407 0.22572 53.344 53.198 53.423 -0.063423 22 10 3 0 0 0 0.64853 1 28986 28986 14.582 0 1 2282000 + 11934 29548 8169 8339 13766 13766 0.0179095841074286 FHGDHKRLF 9 Unmodified _FHGDHKRLF_ 0 0 0 REV__nc|ENSG00000080224|Q9UF33|EPHA6 REV__nc|ENSG00000080224|Q9UF33|EPHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.204345703125 3 386.205197 1155.59376 -0.73611 -0.00028429 -0.88847 -0.00034313 -1.6246 -0.00062742 386.20475125171794 33.078 0.31535 33.078 32.908 33.223 0 21 15 2 0 0 0 0.55144 1 17327 17327 2.4985 1.0434 1 2186100 + 11935 17661 8170 8340 13767 13767 0.022187895228398702 FHGDHKRLF 9 Unmodified _FHGDHKRLF_ 0 0 0 REV__nc|ENSG00000080224|Q9UF33|EPHA6 REV__nc|ENSG00000080224|Q9UF33|EPHA6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 386.205197 1155.59376 -0.73611 -0.00028429 -0.88847 -0.00034313 -1.6246 -0.00062742 386.20475125171794 33.078 0.31535 33.078 32.908 33.223 0 0 0 NaN 2.4985 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2186100 + 11936 17661 8170 8340 0.022187895228398702 FHGHDECL 8 Unmodified _FHGHDECL_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.1966552734375 2 479.197802 956.381051 NaN NaN NaN NaN NaN NaN NaN 64.416 1 64.416 63.916 64.916 0 0 0 0 0.97444 1 35923 35923 0.79363 0.10326 1 11937 10169 8171 8341 13768 13768 -0.09888464599316649 FHHDHQGTTDE 11 Unmodified _FHHDHQGTTDE_ 0 0 0 REV__ENST00000473361.5_1_1:32259103-32263870:-|nuORF REV__ENST00000473361.5_1_1:32259103-32263870:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.8502502441406 3 441.849807 1322.52759 0.57197 0.00025273 0.23331 0.00010309 0.80529 0.00035582 441.8498526015153 62.143 0.35038 55.968 55.823 56.174 -6.1757 29 20 2 0 0 0 0.65538 1 40068 40068 4.6037 0 1 38599000 + 11938 19999 8172 8342 13769 13769 -0.12077115900524404 FHHEKWYRNRY 11 Unmodified _FHHEKWYRNRY_ 0 0 0 REV__ENSG00000162482|ENST00000361640|AKR7A3 REV__ENSG00000162482|ENST00000361640|AKR7A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 818.4000244140625 2 818.400015 1634.78548 NaN NaN NaN NaN NaN NaN NaN 63.719 1 63.708 63.208 64.208 -0.010532 0 0 0 0.9435 1 34864 34864 0 0 1 + 11939 21649 8173 8343 13770 13770 -0.006523345168261585 FHHFVMMI 8 Unmodified _FHHFVMMI_ 0 0 0 ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF ENST00000374212.4_1_9:116024667-116024982:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2548217773438 2 531.256608 1060.49866 NaN NaN NaN NaN NaN NaN NaN 89.972 1 89.47 88.97 89.97 -0.50171 0 0 0 0.97444 1 49184 49184 0.79363 0.10326 1 11940 12439 8174 8344 13771 13771 -0.02916603264202422 FHHIYVHVFVR 11 Unmodified _FHHIYVHVFVR_ 0 0 0 REV__ENSG00000120162|ENST00000262244|MOB3B REV__ENSG00000120162|ENST00000262244|MOB3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2676696777344 3 485.266568 1452.77787 0.4571 0.00022182 1.482 0.00071918 1.9391 0.000941 485.6016316519764 59.812 0.32321 59.759 59.595 59.918 -0.053062 42 15 4 0 0 0 0.72952 1 32681 32681 0.50596 0 1 12242000 + 11941 19231 8175 8345 13772 13772 0.06959557953518924 FHIEFRSAY 9 Unmodified _FHIEFRSAY_ 0 0 0 REV__nc|ENSG00000101605|P52179-2|MYOM1 REV__nc|ENSG00000101605|P52179-2|MYOM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2879028320312 2 585.290548 1168.56654 NaN NaN NaN NaN NaN NaN NaN 53.313 1 53.313 52.813 53.813 0 0 0 0 0.70111 1 29543 29543 9.3474 0.75416 1 + 11942 18187 8176 8346 13773 13773 -0.010997388081932513 FHIHPHYSPW 10 Unmodified _FHIHPHYSPW_ 0 0 0 REV__ENST00000518808.1_1_8:21846430-21847981:+|nuORF REV__ENST00000518808.1_1_8:21846430-21847981:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5452575683594 3 440.880602 1319.61998 1.5806 0.00069687 -1.1037 -0.0004866 0.47692 0.00021027 440.8802252354536 50.037 0.22114 49.988 49.865 50.087 -0.048824 19 10 2 0 0 0 0.23986 1 27045 27045 2.086 0 1 1355600 + 11943 28251 8177 8347 13774 13774 -0.027049413056829508 FHILFMQIL 9 Unmodified _FHILFMQIL_ 0 0 0 REV__ENSG00000187918|ENST00000641930|OR51I2 REV__ENSG00000187918|ENST00000641930|OR51I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8891296386719 3 387.887817 1160.64162 1.3351 0.00051785 1.606 0.00062295 2.9411 0.0011408 387.8884457815294 80.973 1.1635 74.797 74.369 75.532 -6.1757 110 65 2 0 0 0 0.25297 1 53184 53184 13.042 0 1 28022000 + 11944 23673 8178 8348 13775 13775 0.0677272739867476 FHISRLFYF 9 Unmodified _FHISRLFYF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5540161132812 3 410.553715 1228.63931 -0.08611 -3.5353E-05 0.78887 0.00032387 0.70276 0.00028852 410.55398025587533 76.979 0.47208 77.029 76.824 77.296 0.05011 70 19 5 0 0 0 0.19361 2 42432 42432;42534 23.79 4.1638 1 54593000 11945 950 8179 8349 13776;13777 13776 0.034140149852191826 FHISRLFYF 9 Unmodified _FHISRLFYF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3272705078125 2 615.326934 1228.63931 0.37349 0.00022982 1.3614 0.0008377 1.7349 0.0010675 615.327720843623 76.988 0.4072 77.038 76.889 77.296 0.05011 42 16 3 0 0 0 0.02676 2 42456 42456;42560 61.602 35.334 1 9750400 11946 950 8179 8349 13778;13779 13778 0.034140149852191826 FHISRLFYF 9 Unmodified _FHISRLFYF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5543823242188 3 410.553715 1228.63931 0.59254 0.00024327 0.79953 0.00032825 1.3921 0.00057152 410.5539893475653 99.675 0.14142 93.499 93.416 93.558 -6.1757 20 8 3 0 0 0 0.27545 1 66442 66442 18.373 4.1549 1 102700000 11947 950 8179 8349 13780 13780 0.034140149852191826 FHITEQQGSF 10 Unmodified _FHITEQQGSF_ 0 0 0 REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF REV__ENST00000474228.1_1_2:65593748-65593868:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5229187011719 3 398.524372 1192.55129 NaN NaN NaN NaN NaN NaN NaN 19.415 1 19.415 18.915 19.915 0 0 0 0 0.98914 1 9707 9707 0.77653 0.078866 1 + 11948 27559 8180 8350 13781 13781 -0.03728650396055855 FHITGAYLL 9 Unmodified _FHITGAYLL_ 0 0 0 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7874755859375 2 517.78711 1033.55967 NaN NaN NaN NaN NaN NaN NaN 79.007 1 79.062 78.562 79.562 0.05497 0 0 0 0.11925 1 43643 43643 40.449 0.49126 1 11949 8438 8181 8351 13782 13782 0.04422948311230357 FHKGGSCL 8 Unmodified _FHKGGSCL_ 0 0 0 REV__ENST00000225174.7_1_10:81114292-81114370:+|nuORF REV__ENST00000225174.7_1_10:81114292-81114370:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 848.41259765625 1 848.408334 847.401058 0.08913 7.5619E-05 0.25099 0.00021294 0.34012 0.00028856 848.4077422185745 65.485 0.20722 59.309 59.207 59.414 -6.1757 14 11 2 0 0 0 0.72953 1 42490 42490 14.582 0 1 9467400 + 11950 24774 8182 8352 13783 13783 -0.02874668868707886 FHKSLGAYHDS 11 Unmodified _FHKSLGAYHDS_ 0 0 0 REV__ENSG00000198924|ENST00000361384|DCLRE1A REV__ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2040100097656 3 421.203522 1260.58874 0.049401 2.0808E-05 -1.0674 -0.00044957 -1.018 -0.00042877 421.20335826388 18.775 0.2183 18.781 18.683 18.901 0.0060482 23 10 3 0 0 0 0.69509 1 9537 9537 4.7159 0 1 1528200 + 11951 24100 8183 8353 13784 13784 -0.03113559130451904 FHLAIFDFF 9 Unmodified _FHLAIFDFF_ 0 0 0 ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2955932617188 2 578.794935 1155.57532 0.65151 0.00037709 -2.6772 -0.0015495 -2.0257 -0.0011725 578.7934644453251 39.612 0.16623 39.623 39.55 39.716 0.011452 19 7 4 0 0 0 0.28047 1 21114 21114 18.135 4.2289 1 1815200 11952 4685 8184 8354 13785 13785 0.003752348282660023 FHLATWQDE 9 Unmodified _FHLATWQDE_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.2921752929688 2 573.764363 1145.51417 1.0975 0.00062973 -0.46162 -0.00026486 0.63593 0.00036487 574.2667653569599 48.553 0.24086 43.157 42.962 43.203 -5.3961 18 14 2 0 0 0 0.19613 1 30203 30203 12.532 3.9383 1 15400000 + 11953 23345 8185 8355 13786 13786 -0.05276321941801143 FHLLSILGR 9 Unmodified _FHLLSILGR_ 0 0 0 REV__ENST00000481206.1_1_14:105935538-105936549:+|nuORF REV__ENST00000481206.1_1_14:105935538-105936549:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5509033203125 3 352.550193 1054.62875 0.67583 0.00023826 -0.22965 -8.0964E-05 0.44618 0.0001573 352.5499889609997 58.027 0.17706 57.961 57.834 58.011 -0.066036 14 8 2 0 0 0 0.36964 1 31616 31616 9.544 2.9136 1 1987500 + 11954 27689 8186 8356 13787 13787 0.10362032330795046 FHLMGLQYK 9 Unmodified _FHLMGLQYK_ 0 0 0 REV__ENSG00000103528|ENST00000355377|SYT17 REV__ENSG00000103528|ENST00000355377|SYT17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.300048828125 2 568.799694 1135.58484 0.68184 0.00038783 -1.0883 -0.00061904 -0.40649 -0.00023121 568.7989593897698 51.664 0.4315 46.015 45.848 46.279 -5.649 76 27 4 0 0 0 0.20428 2 32456 32456;32577 23.148 5.0134 1 391090000 + 11955 18312 8187 8357 13788;13789 13788 0.0224667984214193 FHLPDALEI 9 Unmodified _FHLPDALEI_ 0 0 0 ENSG00000100385|ENST00000216223|IL2RB ENSG00000100385|ENST00000216223|IL2RB ENSG00000100385|ENST00000216223|IL2RB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7808227539062 2 527.782025 1053.5495 NaN NaN NaN NaN NaN NaN NaN 84.684 1 84.185 83.685 84.685 -0.49961 0 0 0 0.7243 1 46340 46340 8.5933 2.2392 1 11956 1812 8188 8358 13790 13790 0.02486340585983271 FHLRSIELF 9 Unmodified _FHLRSIELF_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1862487792969 3 387.885353 1160.63423 0.00092464 3.5866E-07 -1.2101 -0.00046938 -1.2092 -0.00046902 388.21872967078826 51.673 0.22792 51.239 51.097 51.325 -0.43367 17 11 2 0 0 0 0.20727 1 27832 27832 8.1555 1.0538 1 8835100 + 11957 24000 8189 8359 13791 13791 0.06033711122586283 FHLWIRRN 8 Unmodified _FHLWIRRN_ 0 0 0 ENST00000474593.1_1_6:73985278-74020035:-|nuORF;nc|ENSG00000135314|Q4VXA5|KHDC1 ENST00000474593.1_1_6:73985278-74020035:-|nuORF ENST00000474593.1_1_6:73985278-74020035:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2181396484375 3 381.217437 1140.63048 0.52659 0.00020075 0.58914 0.00022459 1.1157 0.00042534 381.21743118074505 58.642 0.6674 58.581 58.254 58.922 -0.060722 85 33 4 0 0 0 0.80831 1 31858 31858 1.6526 0.45928 1 7066500 11958 13941 8190 8360 13792 13792 0.06579086139436185 FHLYSAGSDWE 11 Unmodified _FHLYSAGSDWE_ 0 0 0 ENST00000520931.5_2_5:150410026-150410104:-|nuORF ENST00000520931.5_2_5:150410026-150410104:-|nuORF ENST00000520931.5_2_5:150410026-150410104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.8600769042969 3 437.859532 1310.55677 0.50379 0.00022059 1.0114 0.00044285 1.5152 0.00066344 437.8601669926782 74.43 0.3597 74.475 74.344 74.704 0.045967 47 15 5 0 0 0 0.71259 1 41006 41006 3.0723 0.98626 1 7487400 11959 14736 8191 8361 13793 13793 -0.08608971604212456 FHNWFDDRA 9 Unmodified _FHNWFDDRA_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.1811218261719 3 403.180828 1206.52066 0.31934 0.00012875 0.22489 9.067E-05 0.54423 0.00021942 403.1809984756512 59.081 0.25399 58.59 58.453 58.707 -0.49079 28 11 3 0 0 0 0.58466 1 32120 32120 1.1933 0.41681 1 2573000 11960 4654 8192 8362 13794 13794 -0.07434383990448623 FHNWFDDRA 9 Unmodified _FHNWFDDRA_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 403.180828 1206.52066 0.31934 0.00012875 0.22489 9.067E-05 0.54423 0.00021942 403.1809984756512 59.081 0.25399 58.59 58.453 58.707 -0.49079 -0.028774 0.00010963 NaN 1.1933 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2573000 11961 4654 8192 8362 -0.07434383990448623 FHNWFDDRA 9 Unmodified _FHNWFDDRA_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.180828 1206.52066 0.35092 0.00014148 -0.26073 -0.00010512 0.090185 3.6361E-05 403.1805323267728 58.709 0.17398 58.648 58.546 58.72 -0.060719 0.028774 -0.00047775 NaN 1.1933 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 913740 11962 4654 8192 8362 -0.07434383990448623 FHPAKFMW 8 Unmodified _FHPAKFMW_ 0 0 0 ENST00000326195.12_1_6:30558692-30558890:+|nuORF ENST00000326195.12_1_6:30558692-30558890:+|nuORF ENST00000326195.12_1_6:30558692-30558890:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.263427734375 2 532.262748 1062.51094 NaN NaN NaN NaN NaN NaN NaN 70.442 1 69.965 69.465 70.465 -0.47746 0 0 0 0.9706 1 38527 38527 6.3541 1.1234 1 11963 11816 8193 8363 13795 13795 -0.017812435295127216 FHPGGLTF 8 Unmodified _FHPGGLTF_ 0 0 0 ENST00000531958.5_1_11:67184814-67192505:+|nuORF;nc|ENSG00000172508|A5YM72|CARNS1;nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1 ENST00000531958.5_1_11:67184814-67192505:+|nuORF ENST00000531958.5_1_11:67184814-67192505:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.224365234375 2 438.224146 874.433738 NaN NaN NaN NaN NaN NaN NaN 17.161 1 14.575 14.075 15.075 -2.5866 0 0 0 0.88073 1 8949 8949 19.439 7.7987 1 11964 8228 8194 8364 13796 13796 -0.008501384742089613 FHPLFLEDE 9 Unmodified _FHPLFLEDE_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8529357910156 3 382.853718 1145.53933 -0.5496 -0.00021042 -1.9362 -0.0007413 -2.4858 -0.00095172 382.85283690714925 18.097 0.068344 18.11 18.071 18.139 0.013865 16 9 2 0 0 0 0.60485 1 9038 9038 1.0715 0.29493 1 711840 11965 253 8195 8365 13797 13797 -0.027622671392464326 FHPLSRNEF 9 Unmodified _FHPLSRNEF_ 0 0 0 REV__ENSG00000148606|ENST00000372371|POLR3A REV__ENSG00000148606|ENST00000372371|POLR3A MSMS AL20221201_MKP_PDAC_01 4 382.8599548339844 3 382.861207 1145.56179 NaN NaN NaN NaN NaN NaN NaN 13.739 1 11.236 10.736 11.736 -2.5029 0 0 0 0.83812 1 6963 6963 2.9952 1.8019 1 + 11966 20960 8196 8366 13798 13798 -0.005166229509541154 FHPRLPRFL 9 Unmodified _FHPRLPRFL_ 0 0 0 REV__ENST00000436079.1_1_22:21356561-21356627:+|nuORF REV__ENST00000436079.1_1_22:21356561-21356627:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9018859863281 3 394.901337 1181.68218 1.5249 0.00060218 -1.541 -0.00060854 -0.016101 -6.3585E-06 394.90097759703906 95.886 0.3101 89.71 89.552 89.862 -6.1757 40 18 3 0 0 0 0.57331 1 63599 63599 2.9952 0 1 16019000 + 11967 27026 8197 8367 13799 13799 0.0986082983331471 FHQLRISY 8 Unmodified _FHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2891235351562 2 532.287808 1062.56106 0.63643 0.00033876 0.2551 0.00013579 0.89153 0.00047455 532.2880908869093 46.126 0.16895 46.098 45.997 46.166 -0.028011 11 7 2 0 0 0 0.1875 1 24820 24820 74.929 40.827 1 2918800 11968 6242 8198 8368 13800 13800 0.03228582399992774 FHQPHMERK 9 Unmodified _FHQPHMERK_ 0 0 0 ENSG00000161594|ENST00000293303|KLHL10 ENSG00000161594|ENST00000293303|KLHL10 ENSG00000161594|ENST00000293303|KLHL10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.8209838867188 2 605.300924 1208.5873 0.5407 0.00032728 -0.34028 -0.00020597 0.20041 0.00012131 605.3000070482889 99.258 0.14649 93.083 93.028 93.174 -6.1757 15 8 3 0 0 0 0.20727 1 66097 66097 7.9102 1.187 1 26811000 11969 6796 8199 8369 13801 13801 -0.008654717001945755 FHQYPYPCHI 10 Unmodified _FHQYPYPCHI_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|75|2|anti-sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|75|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.5360717773438 3 435.534214 1303.58081 NaN NaN NaN NaN NaN NaN NaN 25.741 1 25.724 25.224 26.224 -0.017006 0 0 0 0.81521 1 13210 13210 6.6304 1.7334 1 + 11970 30116 8200 8370 13802 13802 -0.05883409651551119 FHRFRQYFTE 10 Unmodified _FHRFRQYFTE_ 0 0 0 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 715.8513793945312 2 715.851835 1429.68912 NaN NaN NaN NaN NaN NaN NaN 61.915 1 61.428 60.928 61.928 -0.48764 0 0 0 0.97302 1 33725 33725 3.5965 0.31518 1 + 11971 23856 8201 8371 13803 13803 -0.008539020768012051 FHRPFMQL 8 Unmodified _FHRPFMQL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.784423828125 2 538.278929 1074.54331 1.1228 0.00060436 0.65417 0.00035213 1.7769 0.00095649 538.7832786008842 53.992 0.37308 48.126 47.929 48.302 -5.8653 37 21 2 0 0 0 0.67481 1 34160 34160 19.439 1.2926 1 21852000 11972 2128 8202 8372 13804 13804 0.009015438734877534 FHRPNEITY 9 Unmodified _FHRPNEITY_ 0 0 0 REV__ENSG00000197157|ENST00000354725|SND1 REV__ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7937622070312 2 588.793455 1175.57236 0.43423 0.00025567 -0.93108 -0.00054822 -0.49686 -0.00029255 588.792930008662 62.205 0.46655 56.029 55.782 56.248 -6.1757 59 26 3 0 0 0 0.094149 2 40031 40031;40159 34.402 5.3201 1 54615000 + 11973 23901 8203 8373 13805;13806 13805 -0.008406402965420057 FHRPWRRGWHF 11 Unmodified _FHRPWRRGWHF_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MSMS AL20221201_MKP_PDAC_01 4 791.4130249023438 2 791.407978 1580.8014 NaN NaN NaN NaN NaN NaN NaN 95.442 1 89.267 88.767 89.767 -6.1757 0 0 0 0.93613 1 63218 63218 5.2969 0.39987 1 11974 755 8204 8374 13807 13807 0.034234165107136505 FHRRCRRCCLP 11 Unmodified _FHRRCRRCCLP_ 0 0 0 REV__nc|ENSG00000163374|Q9H869-8|YY1AP1 REV__nc|ENSG00000163374|Q9H869-8|YY1AP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 723.8607788085938 2 723.860634 1445.70672 NaN NaN NaN NaN NaN NaN NaN 18.591 1 18.597 18.097 19.097 0.0060463 0 0 0 0.9435 1 9427 9427 0 0 1 + 11975 29742 8205 8375 13808 13808 0.0016907538124542043 FHRSKASLRRD 11 Unmodified _FHRSKASLRRD_ 0 0 0 REV__ENST00000222644.9_1_7:24727299-24727362:+|nuORF REV__ENST00000222644.9_1_7:24727299-24727362:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 458.2561645507812 3 458.256731 1371.74836 NaN NaN NaN NaN NaN NaN NaN 12.076 1 9.5941 9.0941 10.094 -2.482 0 0 0 0.93933 1 6092 6092 1.2148 0 1 + 11976 24764 8206 8376 13809 13809 0.07735993937376406 FHRVRYYWLFC 11 Unmodified _FHRVRYYWLFC_ 0 0 0 REV__ENSG00000179397|ENST00000366534|CATSPERE REV__ENSG00000179397|ENST00000366534|CATSPERE MSMS AL20221201_MKP_PDAC_01 4 795.3952026367188 2 795.395356 1588.77616 NaN NaN NaN NaN NaN NaN NaN 92.285 1 86.109 85.609 86.609 -6.1757 0 0 0 0.93933 1 61023 61023 2.9952 1.5133 1 + 11977 23096 8207 8377 13810 13810 0.005321808733015132 FHRYNYYRLH 10 Unmodified _FHRYNYYRLH_ 0 0 0 REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.8892822265625 4 367.936277 1467.716 0.80263 0.00029532 4.3785 0.001611 5.1811 0.0019063 368.18828518150946 26.203 0.33824 23.251 23.036 23.374 -2.9511 44 19 3 0 0 0 0.23986 1 14385 14385 0.69767 0.60282 1 17912000 + 11978 27269 8208 8378 13811 13811 0.0008520653441337345 FHSDTQTFGF 10 Unmodified _FHSDTQTFGF_ 0 0 0 REV__nc|ENSG00000135541|Q8N157-2|AHI1 REV__nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2640380859375 2 593.76182 1185.50909 0.06213 3.689E-05 0.24927 0.00014801 0.3114 0.0001849 594.2633594590109 61.609 0.21001 61.609 61.497 61.707 0 14 9 2 0 0 0 0.6606 1 34364 34364 7.2892 0.56607 1 1852600 + 11979 29647 8209 8379 13812 13812 -0.07624625804442076 FHSEDEIEYE 10 Unmodified _FHSEDEIEYE_ 0 0 0 ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3;ENST00000380987.2_1_13:28578191-28599431:-|nuORF ENSG00000122025|ENST00000241453|FLT3 ENSG00000122025|ENST00000241453|FLT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.768310546875 2 649.26459 1296.51463 0.72876 0.00047316 3.3982 0.0022064 4.127 0.0026795 649.2677749510189 54.525 0.20143 54.525 54.44 54.641 0 14 8 2 0 0 0 0.23566 1 30317 30317 7.2892 3.3448 1 1617100 11980 3617 8210 8380 13813 13813 -0.12176991803289638 FHSESGLF 8 Unmodified _FHSESGLF_ 0 0 0 ENST00000601764.5_1_19:4697564-4723732:-|nuORF;nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9;ENST00000597145.5_1_19:4685559-4714096:-|nuORF ENST00000601764.5_1_19:4697564-4723732:-|nuORF ENST00000601764.5_1_19:4697564-4723732:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.216796875 2 462.216517 922.418482 NaN NaN NaN NaN NaN NaN NaN 31.087 1 30.985 30.485 31.485 -0.10269 0 0 0 0.9249 1 16149 16149 15.768 0 1 11981 5387 8211 8381 13814 13814 -0.045830500620240855 FHSKNGNDLH 10 Unmodified _FHSKNGNDLH_ 0 0 0 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1885070800781 3 390.187983 1167.54212 -0.5322 -0.00020766 2.1803 0.00085073 1.6481 0.00064307 390.1888001460337 26.106 0.20208 26.106 26.006 26.208 0 32 11 4 0 0 0 0.60623 1 13384 13384 6.1918 0 1 14805000 11982 3773 8212 8382 13815 13815 -0.0349499896171892 FHSLPLLRY 9 Unmodified _FHSLPLLRY_ 0 0 0 ENSG00000165195|ENST00000333590|PIGA ENSG00000165195|ENST00000333590|PIGA ENSG00000165195|ENST00000333590|PIGA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.288818359375 2 573.326934 1144.63931 1.3854 0.00079427 -2.2737 -0.0013035 -0.88828 -0.00050928 573.327019250927 87.874 0.65637 81.698 81.512 82.168 -6.1757 48 36 2 0 0 0 0.17718 1 58072 58072 20.454 7.4112 1 15206000 11983 7308 8213 8383 13816 13816 0.07278014985240588 FHSNELKFI 9 Unmodified _FHSNELKFI_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8700256347656 3 378.869591 1133.58694 -0.11732 -4.4448E-05 0.87623 0.00033198 0.75891 0.00028753 379.20416287923905 30.564 0.21283 30.595 30.477 30.69 0.030106 17 9 2 0 0 0 0.52844 1 15992 15992 5.7319 0.32914 1 1746800 + 11984 17564 8214 8384 13817 13817 0.02549431851616646 FHSSVEQKF 9 Unmodified _FHSSVEQKF_ 0 0 0 REV__ENST00000508002.5_1_4:88896921-88901631:+|nuORF REV__ENST00000508002.5_1_4:88896921-88901631:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 370.1861267089844 3 370.185579 1107.53491 NaN NaN NaN NaN NaN NaN NaN 34.15 1 30.164 29.664 30.664 -3.9853 0 0 0 0.82396 1 19659 19659 2.7352 0 1 + 11985 28110 8215 8385 13818 13818 -0.014557315621232192 FHTFRAPLNDV 11 Unmodified _FHTFRAPLNDV_ 0 0 0 REV__nc|ENSG00000095596|O43174-2|CYP26A1 REV__nc|ENSG00000095596|O43174-2|CYP26A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.8427124023438 2 658.840936 1315.66732 0.042858 2.8236E-05 -0.040194 -2.6481E-05 0.0026639 1.7551E-06 658.8422156828457 65.725 0.39928 59.55 59.324 59.723 -6.1757 50 23 3 0 0 0 0.58219 1 42608 42608 12.241 0.60036 1 51498000 + 11986 17946 8216 8386 13819 13819 0.022112931746505637 FHTLLMFLY 9 Unmodified _FHTLLMFLY_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.54248046875 3 395.543939 1183.60999 NaN NaN NaN NaN NaN NaN NaN 33.367 1 33.208 32.708 33.708 -0.15918 0 0 0 0.84369 1 17402 17402 1.1933 0.41681 1 11987 5803 8217 8387 13820 13820 0.02552734644746124 FHVFDCPTK 9 Unmodified _FHVFDCPTK_ 0 0 0 ENST00000228865.2_1_12:12795300-12795372:+|nuORF ENST00000228865.2_1_12:12795300-12795372:+|nuORF ENST00000228865.2_1_12:12795300-12795372:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7199401855469 3 365.176027 1092.50625 0.36667 0.0001339 -0.32821 -0.00011985 0.038468 1.4048E-05 365.17591605574626 40.455 0.31865 40.46 40.295 40.614 0.0050545 37 14 3 0 0 0 0.21473 1 21586 21586 2.4985 2.4985 1 9922500 11988 11056 8218 8388 13821 13821 -0.03630172462931114 FHVFFCFFI 9 Unmodified _FHVFFCFFI_ 0 0 0 REV__ENSG00000163646|ENST00000327047|CLRN1 REV__ENSG00000163646|ENST00000327047|CLRN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.8232421875 2 603.793881 1205.57321 0.49512 0.00029895 -1.2027 -0.00072619 -0.70759 -0.00042724 603.7931115939741 84.422 0.29025 83.922 83.729 84.02 -0.49961 29 12 3 0 0 0 0.18941 1 46153 46153 14.582 0.67564 1 1501600 + 11989 21797 8219 8389 13822 13822 -0.0213551718115923 FHVPRSLL 8 Unmodified _FHVPRSLL_ 0 0 0 ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7886047363281 2 484.787444 967.560336 0.86187 0.00041782 1.8048 0.00087495 2.6667 0.0012928 484.78810108444384 42.051 0.33516 37.366 37.173 37.508 -4.6846 34 20 2 0 0 0 0.75262 1 25356 25356 12.532 0 1 13909000 11990 15638 8220 8390 13823 13823 0.07525787750955715 FHVPRSLL 8 Unmodified _FHVPRSLL_ 0 0 0 ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 484.787444 967.560336 0.42434 0.00020572 1.7206 0.00083414 2.145 0.0010399 484.78806332951865 37.046 0.28461 37.046 36.916 37.201 0 -0.13623 -0.00041647 NaN 12.532 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5368300 11991 15638 8220 8390 0.07525787750955715 FHVPRSLL 8 Unmodified _FHVPRSLL_ 0 0 0 ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF ENST00000587708.6_1_19:36237754-36237895:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.787444 967.560336 -0.014767 -7.1587E-06 2.2545 0.0010929 2.2397 0.0010858 484.7885540823752 37.49 0.18649 37.219 37.092 37.279 -0.27133 0.036383 0.00010112 NaN 12.532 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 921270 11992 15638 8220 8390 0.07525787750955715 FHVQRDFPL 9 Unmodified _FHVQRDFPL_ 0 0 0 REV__ENST00000554598.5_1_14:57706266-57735366:-|nuORF REV__ENST00000554598.5_1_14:57706266-57735366:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8743286132812 3 386.873336 1157.59818 1.5586 0.00060296 0.74618 0.00028868 2.3047 0.00089164 386.874069594654 21.028 0.29076 18.335 18.124 18.414 -2.693 21 16 2 0 0 0 0.42049 1 11179 11179 11.495 3.3392 1 1813400 + 11993 28753 8221 8391 13824 13824 0.02568253945764809 FHVRCYKFL 9 Unmodified _FHVRCYKFL_ 0 0 0 REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1212.303344726562 1 1212.63465 1211.62737 0.49955 0.00060578 0.14565 0.00017661 0.6452 0.00078239 1212.6308435528688 67.855 0.10153 61.679 61.636 61.737 -6.1757 6 5 2 0 0 0 0.61256 1 44205 44205 0.6015 0 1 10807000 + 11994 28750 8222 8392 13825 13825 0.030020749703908223 FHVRYRME 8 Unmodified _FHVRYRME_ 0 0 0 GPSM2|p.Y185Lfs*2|1|0.1|ENSG00000121957|chr1:108898092-108898093|-/T|frameshift_variant;ENSG00000121957|ENST00000264126|GPSM2 GPSM2|p.Y185Lfs*2|1|0.1|ENSG00000121957|chr1:108898092-108898093|-/T|frameshift_variant GPSM2|p.Y185Lfs*2|1|0.1|ENSG00000121957|chr1:108898092-108898093|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8814086914062 3 379.858921 1136.55493 0.88972 0.00033797 3.4973 0.0013285 4.387 0.0016664 379.8602567809495 26.432 0.44961 23.481 23.319 23.769 -2.9511 40 23 2 0 0 0 8.7369 1 14640 14640 6.7232 1.4263 1 9359200 11995 3612 8223 8393 13826 13826 -0.007882591031830088 FHVSRKARRL 10 Unmodified _FHVSRKARRL_ 0 0 0 REV__ENSG00000160613|ENST00000320934|PCSK7 REV__ENSG00000160613|ENST00000320934|PCSK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.9267883300781 3 423.926545 1268.75781 1.0027 0.00042508 -1.5369 -0.00065154 -0.53419 -0.00022646 423.925965488443 31.938 0.2534 28.242 28.105 28.358 -3.6958 18 13 2 0 0 0 0.65023 1 18197 18197 8.4443 4.3277 1 7124400 + 11996 21553 8224 8394 13827 13827 0.13417807013615857 FHVWFWNRWWL 11 Unmodified _FHVWFWNRWWL_ 0 0 0 REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 838.9200439453125 2 838.917313 1675.82007 NaN NaN NaN NaN NaN NaN NaN 86.066 1 86.127 85.627 86.627 0.061638 0 0 0 0.9435 1 47706 47706 0 0 1 + 11997 27043 8225 8395 13828 13828 0.009195333619345547 FHVWFWNRWWL 11 Unmodified _FHVWFWNRWWL_ 0 0 0 REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 838.9212646484375 2 838.917313 1675.82007 NaN NaN NaN NaN NaN NaN NaN 92.598 1 92.628 92.128 93.128 0.030197 0 0 0 0.9435 1 51491 51491 0 0 1 + 11998 27043 8225 8395 13829 13829 0.009195333619345547 FHWCCVVQCHR 11 Unmodified _FHWCCVVQCHR_ 0 0 0 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7135925292969 3 473.207338 1416.60019 0.61918 0.000293 -1.8105 -0.00085673 -1.1913 -0.00056373 473.2064211988733 49.815 0.27074 49.815 49.716 49.986 0 21 12 2 0 0 0 0.30551 1 27400 27400 2.6312 1.1761 1 2906500 11999 3142 8226 8396 13830 13830 -0.09145099903957998 FHWLILIMY 9 Unmodified _FHWLILIMY_ 0 0 0 REV__ENST00000581471.2_1_18:5239176-5239272:+|nuORF REV__ENST00000581471.2_1_18:5239176-5239272:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.7882690429688 2 618.335913 1234.65727 1.2287 0.00075978 1.3291 0.00082183 2.5579 0.0015816 618.8381432101197 91.355 0.3143 91.391 91.219 91.533 0.036499 19 11 2 0 0 0 0.21302 1 50745 50745 5.2307 3.3864 1 4525300 + 12000 29067 8227 8397 13831 13831 0.04933013915729134 FHYDALLYY 9 Unmodified _FHYDALLYY_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1936645507812 3 402.193963 1203.56006 -0.60296 -0.00024251 0.12562 5.0522E-05 -0.47734 -0.00019198 402.1940974130272 17.793 0.13507 17.793 17.724 17.859 0 51 28 2 0 0 0 0.58466 1 8796 8796 1.1933 0 1 901670 + 12001 17997 8228 8398 13832 13832 -0.033576767595604906 FHYDALLYY 9 Unmodified _FHYDALLYY_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 402.193963 1203.56006 -0.60296 -0.00024251 0.12562 5.0522E-05 -0.47734 -0.00019198 402.1940974130272 17.793 0.13507 17.793 17.724 17.859 0 0 0 NaN 1.1933 51 28 2 NaN NaN NaN NaN 0 NaN NaN 0 901670 + 12002 17997 8228 8398 -0.033576767595604906 FHYDYDQIWFH 11 Unmodified _FHYDYDQIWFH_ 0 0 0 REV__ENSG00000135220|ENST00000251566|UGT2A3 REV__ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 785.8414306640625 2 785.841133 1569.66771 1.3563 0.0010658 -1.2044 -0.00094648 0.15183 0.00011931 785.8405838263168 55.26 0.44339 49.339 49.143 49.587 -5.9211 83 27 4 0 0 0 0.7187 1 35189 35189 2.4985 1.169 1 60654000 + 12003 20044 8229 8399 13833 13833 -0.0943333189616169 FHYKWRTEKHK 11 Unmodified _FHYKWRTEKHK_ 0 0 0 REV__ENSG00000140297|ENST00000396065|GCNT3 REV__ENSG00000140297|ENST00000396065|GCNT3 MSMS AL20221201_MKP_PDAC_01 4 780.5818481445312 2 780.415134 1558.81572 NaN NaN NaN NaN NaN NaN NaN 95.809 1 89.633 89.133 90.133 -6.1757 0 0 0 0.94002 1 63471 63471 2.4985 1.169 1 + 12004 20459 8230 8400 13834 13834 0.05866024148326687 FIADGPRKNF 10 Unmodified _FIADGPRKNF_ 0 0 0 ENST00000396821.7_1_22:38880557-38880716:-|nuORF ENST00000396821.7_1_22:38880557-38880716:-|nuORF ENST00000396821.7_1_22:38880557-38880716:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.876953125 3 388.876857 1163.60874 1.4652 0.00056977 0.48543 0.00018877 1.9506 0.00075854 388.8768656688667 20.112 1.2222 17.456 16.88 18.102 -2.6564 217 79 3 0 0 0 0.65023 1 10712 10712 8.4443 8.4443 1 7805000 12005 12806 8231 8401 13835 13835 0.03348236600186283 FIADHCPTL 9 Carbamidomethyl (C) _FIADHC(Carbamidomethyl (C))PTL_ FIADHC(1)PTL FIADHC(78)PTL 0 1 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80010993-80011926:+|nuORF ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2587890625 2 537.257859 1072.50117 0.84627 0.00045467 0.001131 6.0765E-07 0.8474 0.00045527 537.2577779885102 50.006 0.45903 44.467 44.251 44.71 -5.5391 68 29 3 0 0 0 0.010818 2 31271 31271;31404 78.149 50.521 1 65924000 12006 7907 8232 8402 13836;13837 13836 770 -0.032184763255600046 FIAKIKTI 8 Unmodified _FIAKIKTI_ 0 0 0 REV__ENST00000561188.5_1_15:49915962-49917342:+|nuORF REV__ENST00000561188.5_1_15:49915962-49917342:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 934.1151733398438 1 933.613165 932.605889 -0.31729 -0.00029623 1.4776 0.0013795 1.1603 0.0010833 933.6148267216789 104.05 0.07753 104 103.96 104.04 -0.048737 5 3 2 0 0 0 8.7369 1 57781 57781 0.6015 0 1 1140900 + 12007 28835 8233 8403 13838 13838 0.1368901321334306 FIASKGVKLV 10 Unmodified _FIASKGVKLV_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5629577636719 3 354.562099 1060.66447 1.0503 0.0003724 0.17975 6.3734E-05 1.23 0.00043613 354.56219434632214 45.316 0.3126 40.361 40.177 40.49 -4.9549 40 21 2 0 0 0 0.48505 1 27805 27805 24.882 11.267 1 19471000 12008 4211;16049;10744 8234 8404 13839 13839 0.13656069787793967 FIATDDITEL 10 Unmodified _FIATDDITEL_ 0 0 0 nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1;ENST00000466459.5_1_7:112097053-112108063:+|nuORF nc|ENSG00000288640|O00458-2|IFRD1 nc|ENSG00000288640|O00458-2|IFRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8588256835938 3 379.86065 1136.56012 1.4357 0.00054537 0.65522 0.00024889 2.0909 0.00079426 379.86082106367513 32.172 0.84187 28.316 27.89 28.732 -3.8562 137 47 4 0 0 0 0.50944 1 18093 18093 9.544 4.8281 1 533990000 12009 344 8235 8405 13840 13840 -0.0026972155023941013 FICHLFRLKAP 11 Unmodified _FICHLFRLKAP_ 0 0 0 REV__ENSG00000204518|ENST00000376221|AADACL4 REV__ENSG00000204518|ENST00000376221|AADACL4 MSMS AL20221201_MKP_PDAC_01 4 448.9237060546875 3 448.925154 1343.75363 NaN NaN NaN NaN NaN NaN NaN 98.885 1 92.709 92.209 93.209 -6.1757 0 0 0 0.91154 1 65690 65690 3.0723 0.44103 1 + 12010 24178 8236 8406 13841 13841 0.09550581475673425 FICPVVGLEM 10 Carbamidomethyl (C),Oxidation (M) _FIC(Carbamidomethyl (C))PVVGLEM(Oxidation (M))_ FIC(1)PVVGLEM FICPVVGLEM(1) FIC(74)PVVGLEM FICPVVGLEM(74) 0 1 1 ENSG00000022277|ENST00000357348|RTF2 ENSG00000022277|ENST00000357348|RTF2 ENSG00000022277|ENST00000357348|RTF2 MSMS AL20221201_MKP_PDAC_01 4 590.7911987304688 2 590.790678 1179.5668 NaN NaN NaN NaN NaN NaN NaN 79.635 1 73.46 72.96 73.96 -6.1757 0 0 0 0.016764 1 52202 52202 74.423 54.984 1 12011 532 8237 8407 13842 13842 36 75 -0.015798231948565444 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2968139648438 2 542.295299 1082.57605 0.11306 6.1313E-05 0.46146 0.00025025 0.57452 0.00031156 542.2956653810077 59.354 0.3841 58.863 58.685 59.069 -0.49079 59 17 5 0 0 0 0.024189 2 32237 32237;32345 59.368 27.063 1 35351000 12012 671;924 8238 8408 13843;13844 13843 0.038060294773458736 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.29541015625 2 542.295299 1082.57605 0.44889 0.00024343 -0.052783 -2.8624E-05 0.39611 0.00021481 542.2951459807155 58.985 0.4867 58.925 58.679 59.166 -0.060722 94 23 5 0 0 0 0.024189 3 32047 32047;32146;32251 59.368 22.928 1 247540000 12013 671;924 8238 8408 13845;13846;13847 13845 0.038060294773458736 FIDASRLVY 9 Unmodified _FIDASRLVY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2950439453125 2 542.295299 1082.57605 0.26274 0.00014248 -0.40204 -0.00021802 -0.1393 -7.5543E-05 542.2951993336226 65.677 1.0467 59.501 59.251 60.298 -6.1757 161 60 4 0 0 0 0.037253 2 42675 42543;42675 51.415 22.928 1 465230000 12014 671;924 8238 8408 13848;13849 13849 0.038060294773458736 FIDEAGHCM 9 Carbamidomethyl (C) _FIDEAGHC(Carbamidomethyl (C))M_ FIDEAGHC(1)M FIDEAGHC(64)M 0 1 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2189331054688 2 540.217877 1078.4212 1.042 0.00056289 0.35919 0.00019404 1.4012 0.00075693 540.2179597773988 37.771 0.29551 33.402 33.22 33.516 -4.3689 30 17 2 0 0 0 0.019979 1 22173 22173 63.563 41.816 1 5999600 12015 6383 8239 8409 13850 13850 629 -0.11487285991051976 FIDKQLAAY 9 Unmodified _FIDKQLAAY_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8624267578125 3 356.862325 1067.56515 -0.12865 -4.5912E-05 -0.0066711 -2.3807E-06 -0.13533 -4.8293E-05 356.86229906084066 35.292 0.35307 35.32 35.143 35.496 0.027363 52 16 4 0 0 0 0.48152 1 18711 18711 5.2969 1.4206 1 131670000 12016 10207 8240 8410 13851 13851 0.034066271030496864 FIDMHASHTI 10 Unmodified _FIDMHASHTI_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5248107910156 3 391.190336 1170.54918 0.69884 0.00027338 -0.33795 -0.0001322 0.36089 0.00014118 391.1903208466451 17.383 0.30638 14.797 14.626 14.932 -2.5866 151 56 4 0 0 0 0.65023 1 9095 9095 8.4443 8.4443 1 18474000 + 12017 19478 8241 8411 13852 13852 -0.029274024054984693 FIDPKKQPAT 10 Unmodified _FIDPKKQPAT_ 0 0 0 CON__P81644 CON__P81644 CON__P81644 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2170715332031 3 382.21688 1143.62881 0.67001 0.00025609 0.94881 0.00036265 1.6188 0.00061874 382.21721964374126 24.065 0.31921 21.238 21.073 21.392 -2.8273 37 17 3 0 0 0 0.41271 2 13135 13023;13135 20.871 11.488 1 6551600 + 12018 180 8242 8412 13853;13854 13854 0.0627398754013484 FIDSFQRVD 9 Unmodified _FIDSFQRVD_ 0 0 0 ENST00000563229.5_1_15:74281313-74286901:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1 ENST00000563229.5_1_15:74281313-74286901:-|nuORF ENST00000563229.5_1_15:74281313-74286901:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.19189453125 3 376.189101 1125.54547 NaN NaN NaN NaN NaN NaN NaN 16.09 1 16.09 15.59 16.59 0 0 0 0 0.83582 1 7815 7815 1.9064 0.062138 1 12019 15356 8243 8413 13855 13855 -0.012277489076950587 FIDSFQRVD 9 Unmodified _FIDSFQRVD_ 0 0 0 ENST00000563229.5_1_15:74281313-74286901:-|nuORF;nc|ENSG00000067221|Q9UBI4-6|STOML1;nc|ENSG00000067221|Q9UBI4-5|STOML1;nc|ENSG00000067221|Q9UBI4-3|STOML1;ENSG00000067221|ENST00000541638|STOML1 ENST00000563229.5_1_15:74281313-74286901:-|nuORF ENST00000563229.5_1_15:74281313-74286901:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.43408203125 3 376.189101 1125.54547 NaN NaN NaN NaN NaN NaN NaN 16.367 1 16.368 15.868 16.868 0.0010548 0 0 0 0.83582 1 8067 8067 1.9064 0.57673 1 12020 15356 8243 8413 13856 13856 -0.012277489076950587 FIDTTSKF 8 Unmodified _FIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7476196289062 2 479.74765 957.480748 0.66774 0.00032035 -0.035389 -1.6978E-05 0.63235 0.00030337 479.7475063224676 40.769 0.26514 40.466 40.297 40.563 -0.30304 24 12 3 0 0 0 0.50364 1 21538 21538 34.402 5.9149 1 3344300 12021 1793;13923 8244 8414 13857 13857 0.0003067628629196406 FIDVDSDQDF 10 Unmodified _FIDVDSDQDF_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.252197265625 2 600.756401 1199.49825 -0.75297 -0.00045235 -2.828 -0.001699 -3.581 -0.0021513 601.2563921141507 29.876 0.36866 29.876 29.833 30.201 0 30 17 3 0 0 0 0.52888 1 15485 15485 14.838 4.7643 1 3290300 + 12022 17601 8245 8415 13858 13858 -0.0935207296936369 FIEDAEAKGF 10 Unmodified _FIEDAEAKGF_ 0 0 0 REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7750244140625 2 563.774396 1125.53424 0.68992 0.00038896 0.016081 9.0658E-06 0.706 0.00039803 563.77438726308 73.617 0.33218 73.617 73.454 73.786 0 21 14 2 0 0 0 0.69064 1 41037 41037 3.9444 1.0552 1 559610 + 12023 23755 8246 8416 13859 13859 -0.02350571001852586 FIEDAEAKGF 10 Unmodified _FIEDAEAKGF_ 0 0 0 REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.774396 1125.53424 0.68992 0.00038896 0.016081 9.0658E-06 0.706 0.00039803 563.77438726308 73.617 0.33218 73.617 73.454 73.786 0 -0.17476 0.00077853 NaN 3.9444 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 559610 + 12024 23755 8246 8416 -0.02350571001852586 FIEDAEAKGF 10 Unmodified _FIEDAEAKGF_ 0 0 0 REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF REV__ENST00000536720.1_1_12:109530171-109530633:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.774396 1125.53424 0.88692 0.00050002 -1.3352 -0.00075273 -0.44824 -0.00025271 563.7736967220204 74.442 0.1786 73.966 73.864 74.042 -0.47588 0.17476 -0.00074506 NaN 3.9444 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 818240 + 12025 23755 8246 8416 -0.02350571001852586 FIEDIMQQL 9 Unmodified _FIEDIMQQL_ 0 0 0 REV__ENSG00000154646|ENST00000284885|TMPRSS15 REV__ENSG00000154646|ENST00000284885|TMPRSS15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7846069335938 2 568.78645 1135.55835 1.4209 0.00080818 -1.0204 -0.0005804 0.40046 0.00022778 568.7843706985129 102.74 0.065521 96.562 96.516 96.581 -6.1757 23 14 2 0 0 0 0.30562 1 68923 68923 16.942 2.104 1 4724600 + 12026 21237 8247 8417 13860 13860 -0.004010538398460994 FIEEGTFLF 9 Unmodified _FIEEGTFLF_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENSG00000168906|ENST00000306434|MAT2A;ENST00000469221.5_1_2:85766338-85768508:+|nuORF ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7772216796875 2 551.776408 1101.53826 2.1471 0.0011847 -0.044935 -2.4794E-05 2.1022 0.0011599 551.7763647227193 95.197 0.43201 95.201 94.972 95.404 0.004158 38 15 3 0 0 0 0.30202 1 52871 52871 24.674 1.5255 1 3727100 12027 7813;13829 8248 8418 13861 13861 -0.008444815081475099 FIEIYNEQI 9 Unmodified _FIEIYNEQI_ 0 0 0 nc|ENSG00000163808|Q9NS87-4|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15 nc|ENSG00000163808|Q9NS87-4|KIF15 nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2955932617188 2 584.797872 1167.58119 0.40603 0.00023745 1.1265 0.00065877 1.5325 0.00089622 584.7984736477549 38.859 0.76134 38.859 38.62 39.381 0 83 35 4 0 0 0 0.16895 1 21007 21007 24.021 14.637 1 13232000 12028 7072 8249 8419 13862 13862 0.0041028854927844804 FIEPFYDE 8 Unmodified _FIEPFYDE_ 0 0 0 REV__nc|ENSG00000185247|P43364-2|MAGEA11 REV__nc|ENSG00000185247|P43364-2|MAGEA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.8275451660156 3 353.827169 1058.45968 0.70219 0.00024845 -0.37772 -0.00013365 0.32446 0.0001148 353.8267878657723 75.133 0.30686 74.656 74.474 74.781 -0.47713 23 13 2 0 0 0 0.80311 1 41083 41083 3.2813 0 1 1551400 + 12029 23487 8250 8420 13863 13863 -0.06721333813243291 FIESNFASV 9 Unmodified _FIESNFASV_ 0 0 0 ENST00000369682.4_1_X:153701276-153701513:+|nuORF ENST00000369682.4_1_X:153701276-153701513:+|nuORF ENST00000369682.4_1_X:153701276-153701513:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2510375976562 2 507.250557 1012.48656 NaN NaN NaN NaN NaN NaN NaN 56.399 1 55.913 55.413 56.413 -0.48554 0 0 0 0.46757 1 30622 30622 16.942 4.4107 1 12030 12313 8251 8421 13864 13864 -0.019182252020527812 FIESWEMLL 9 Unmodified _FIESWEMLL_ 0 0 0 REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF REV__ENST00000559198.1_1_15:49303877-49305024:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.3173828125 2 584.291368 1166.56818 1.0512 0.00061419 -0.89005 -0.00052005 0.16112 9.4142E-05 584.2910378177797 50.425 0.20754 44.886 44.791 44.998 -5.5391 24 13 2 0 0 0 0.19891 1 31707 31707 7.2892 0 1 15595000 + 12031 28812 8252 8422 13865 13865 -0.008438658344402938 FIFCLIQY 8 Unmodified _FIFCLIQY_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.77294921875 2 523.772614 1045.53067 NaN NaN NaN NaN NaN NaN NaN 18.707 1 18.707 18.207 19.207 0 0 0 0 0.97444 1 9319 9319 2.8892 0.58649 1 12032 5601 8253 8423 13866 13866 0.009730876905905461 FIFEKKLAQA 10 Unmodified _FIFEKKLAQA_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.848388671875 2 597.847699 1193.68084 0.35718 0.00021354 -0.26014 -0.00015552 0.097044 5.8017E-05 597.8480343337174 43.209 0.14214 43.194 43.124 43.266 -0.015667 9 6 2 0 0 0 0.23548 1 23177 23177 31.268 16.43 1 3410700 12033 8633 8254 8424 13867 13867 0.09175150953888078 FIFFATFILF 10 Unmodified _FIFFATFILF_ 0 0 0 REV__ENSG00000162695|ENST00000357650|SLC30A7 REV__ENSG00000162695|ENST00000357650|SLC30A7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8274536132812 2 633.352086 1264.68962 0.30982 0.00019622 2.1489 0.001361 2.4587 0.0015572 633.3522001915517 73.789 0.21185 73.833 73.692 73.904 0.043983 15 9 2 0 0 0 0.22507 1 40699 40699 7.2892 0 1 1904300 + 12034 21679 8255 8425 13868 13868 0.06786124590348663 FIFHLGLCAPL 11 Unmodified _FIFHLGLCAPL_ 0 0 0 REV__ENST00000495994.5_1_1:64971609-64971735:+|nuORF REV__ENST00000495994.5_1_1:64971609-64971735:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8412475585938 2 615.83882 1229.66309 NaN NaN NaN NaN NaN NaN NaN 69.434 1 69.465 68.965 69.965 0.030914 0 0 0 0.9385 1 38166 38166 3.5965 0.31518 1 + 12035 27959 8256 8426 13869 13869 0.057441124273964306 FIFLVETGCHH 11 Unmodified _FIFLVETGCHH_ 0 0 0 AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.88330078125 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 23.308 1 23.326 22.826 23.826 0.01749 0 0 0 0.94144 1 12002 12002 0.50596 0 1 12036 25 8257 8427 13870 13870 -0.016068539630396117 FIFNLSFVKF 10 Unmodified _FIFNLSFVKF_ 0 0 0 ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2366638183594 3 421.237504 1260.69068 0.13121 5.527E-05 -0.9565 -0.00040292 -0.8253 -0.00034765 421.2370632776394 76.198 0.35826 76.246 76.086 76.445 0.047943 41 14 4 0 0 0 0.50944 2 42004 42004;42111 9.544 2.9136 1 30975000 12037 13234 8258 8428 13871;13872 13871 0.07076338959245732 FIFNLSFVKF 10 Unmodified _FIFNLSFVKF_ 0 0 0 ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 421.2378234863281 3 421.237504 1260.69068 NaN NaN NaN NaN NaN NaN NaN 98.592 1 92.416 91.916 92.916 -6.1757 0 0 0 0.71851 1 65420 65420 9.544 2.0669 1 12038 13234 8258 8428 13873 13873 0.07076338959245732 FIFPFDSF 8 Unmodified _FIFPFDSF_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2491149902344 2 510.247286 1018.48002 4.5046 0.0022985 -0.29584 -0.00015095 4.2088 0.0021475 510.24705996426366 98.971 0.16942 98.942 98.833 99.003 -0.028282 12 5 3 0 0 0 0.6895 1 54986 54986 18.135 0 1 2339600 + 12039 20349 8259 8429 13874 13874 -0.028481183627604878 FIFQGLQFV 9 Unmodified _FIFQGLQFV_ 0 0 0 REV__ENSG00000181652|ENST00000639579|ATG9B REV__ENSG00000181652|ENST00000639579|ATG9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.8018188476562 2 549.80276 1097.59097 NaN NaN NaN NaN NaN NaN NaN 80.507 1 80.015 79.515 80.515 -0.49247 0 0 0 0.84564 1 44088 44088 2.0598 0.21551 1 + 12040 23217 8260 8430 13875 13875 0.04607521345337773 FIFREGDGVYY 11 Unmodified _FIFREGDGVYY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.3281860351562 2 683.327328 1364.6401 0.62936 0.00043006 -0.044283 -3.026E-05 0.58508 0.0003998 683.326868548247 62.145 0.25816 61.657 61.529 61.788 -0.48764 31 11 4 0 0 0 0.31454 1 33856 33856 26.021 15.87 1 6061700 12041 16013 8261 8431 13876 13876 -0.02763235156362498 FIFREGDGVYY 11 Unmodified _FIFREGDGVYY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 683.3283081054688 2 683.327328 1364.6401 0.45607 0.00031164 -0.3531 -0.00024128 0.10296 7.0358E-05 683.3271100746497 61.748 0.2359 61.715 61.572 61.808 -0.032787 26 11 3 0 0 0 0.12819 1 33693 33693 39.213 29.062 1 6573100 12042 16013 8261 8431 13877 13877 -0.02763235156362498 FIFREGDGVYY 11 Unmodified _FIFREGDGVYY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.328857421875 2 683.327328 1364.6401 1.2503 0.0008544 -0.59368 -0.00040568 0.65667 0.00044872 683.3267171052015 72.829 0.3409 66.653 66.393 66.734 -6.1757 27 17 2 0 0 0 0.15928 1 47655 47655 35.612 18.499 1 14799000 12043 16013 8261 8431 13878 13878 -0.02763235156362498 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7699584960938 2 554.769114 1107.52368 0.67757 0.00037589 1.3394 0.00074303 2.0169 0.0011189 554.769871382073 61.049 0.28621 61.049 60.907 61.193 0 26 11 3 0 0 0 0.10734 1 34030 34030 32.305 10.559 1 1520700 12044 2059 8262 8432 13879 13879 -0.02578553656303484 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7705078125 2 554.769114 1107.52368 0.20388 0.00011311 0.60194 0.00033394 0.80583 0.00044705 554.7696519002129 61.531 0.30072 61.041 60.88 61.18 -0.48932 40 13 4 0 0 0 0.042911 1 33483 33483 48.346 24.136 1 9103200 12045 2059 8262 8432 13880 13880 -0.02578553656303484 FIFSDTHEL 9 Unmodified _FIFSDTHEL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7691650390625 2 554.769114 1107.52368 0.84585 0.00046925 -0.29684 -0.00016468 0.54901 0.00030457 554.7691755233435 67.165 0.49701 60.99 60.826 61.323 -6.1757 41 27 2 0 0 0 0.042911 1 43747 43747 48.346 30.211 1 16011000 12046 2059 8262 8432 13881 13881 -0.02578553656303484 FIGGPSLI 8 Unmodified _FIGGPSLI_ 0 0 0 REV__ENST00000557435.1_1_14:70235056-70235245:+|nuORF REV__ENST00000557435.1_1_14:70235056-70235245:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8710021972656 2 402.236722 802.45889 -0.22255 -8.9518E-05 0.71023 0.00028568 0.48768 0.00019616 402.2369413171496 51.602 0.27416 51.543 51.416 51.69 -0.058918 22 13 2 0 0 0 8.7369 1 27911 27911 19.439 2.3524 1 2025100 + 12047 28789 8263 8433 13882 13882 0.049759163283852104 FIHDQKLF 8 Unmodified _FIHDQKLF_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2837524414062 2 524.284734 1046.55492 NaN NaN NaN NaN NaN NaN NaN 47.298 1 46.945 46.445 47.445 -0.3526 0 0 0 0.97348 1 25351 25351 5.7604 0 1 12048 10833 8264 8434 13883 13883 0.03350064168466815 FIHRYQRL 8 Unmodified _FIHRYQRL_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8217163085938 2 566.82235 1131.63015 -0.49837 -0.00028249 -1.0408 -0.00058992 -1.5391 -0.00087241 566.8215843604187 33.013 0.27724 33.013 32.889 33.166 0 22 13 2 0 0 0 0.66338 1 17286 17286 19.439 5.9311 1 3419100 12049 9210 8265 8435 13884 13884 0.06959666419561472 FIIDEKDAF 9 Unmodified _FIIDEKDAF_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2973022460938 2 549.279315 1096.54408 0.22978 0.00012621 0.20348 0.00011177 0.43326 0.00023798 549.2793448583549 78.868 0.97554 78.382 77.971 78.947 -0.48596 98 40 3 0 0 0 0.46577 1 43022 43022 9.3474 0.75416 1 57302000 + 12050 19040 8266 8436 13885 13885 -0.00033382996502950846 FIIEMVLNL 9 Unmodified _FIIEMVLNL_ 0 0 0 nc|ENSG00000204403|Q6UXS9-2|CASP12 nc|ENSG00000204403|Q6UXS9-2|CASP12 nc|ENSG00000204403|Q6UXS9-2|CASP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3098754882812 2 546.312103 1090.60965 0.84132 0.00045962 -3.6294 -0.0019828 -2.7881 -0.0015232 546.3102633569875 101.36 0.1076 95.184 95.144 95.252 -6.1757 8 5 2 0 0 0 0.087258 1 68015 68015 36.044 1.9418 1 16682000 12051 16506 8267 8437 13886 13886 0.06797314924870079 FIIFYCVYLIL 11 Unmodified _FIIFYCVYLIL_ 0 0 0 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|53 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|53 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.9326171875 3 469.597932 1405.77197 0.11385 5.3463E-05 -0.39683 -0.00018635 -0.28298 -0.00013289 469.5976910639379 38.902 0.32687 38.913 38.757 39.084 0.011452 45 15 4 0 0 0 0.49694 1 20677 20677 16.566 6.2506 1 6669200 12052 101 8268 8438 13887 13887 0.0853127860702898 FIIKESFLL 9 Unmodified _FIIKESFLL_ 0 0 0 ENSG00000175985|ENST00000322564|PLEKHD1 ENSG00000175985|ENST00000322564|PLEKHD1 ENSG00000175985|ENST00000322564|PLEKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8369140625 2 555.333893 1108.65323 2.1071 0.0011701 0.80731 0.00044832 2.9144 0.0016184 555.3345007073624 93.938 0.29885 93.957 93.842 94.14 0.019211 22 11 3 0 0 0 0.042911 1 52221 52221 48.346 0 1 2202700 12053 8556 8269 8439 13888 13888 0.10325247693663187 FIIKRKPLFY 10 Unmodified _FIIKRKPLFY_ 0 0 0 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.278076171875 3 442.276181 1323.80671 NaN NaN NaN NaN NaN NaN NaN 94.518 1 94.098 93.598 94.598 -0.42044 0 0 0 1.0047 1 51638 51638 0.15932 0.064481 1 12054 3343 8270 8440 13889 13889 0.1577628252998693 FIIMFFLLLL 10 Unmodified _FIIMFFLLLL_ 0 0 0 REV__ENSG00000186815|ENST00000335509|TPCN1 REV__ENSG00000186815|ENST00000335509|TPCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.9266662597656 3 423.927501 1268.76067 NaN NaN NaN NaN NaN NaN NaN 28.942 1 28.88 28.38 29.38 -0.062159 0 0 0 0.96756 1 14955 14955 4.1895 0.072875 1 + 12055 23598 8271 8441 13890 13890 0.13704501303550387 FIKESGIQF 9 Unmodified _FIKESGIQF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.8621520996094 3 356.862325 1067.56515 -0.43272 -0.00015442 -0.02315 -8.2613E-06 -0.45587 -0.00016268 356.86228021780687 35.545 0.44735 35.322 35.151 35.599 -0.2224 67 19 4 0 0 0 0.39863 2 18663 18562;18663 8.1555 2.6142 1 186950000 12056 7290 8272 8442 13891;13892 13892 0.034066271030496864 FIKESGIQF 9 Unmodified _FIKESGIQF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8626098632812 3 356.862325 1067.56515 0.9651 0.00034441 -0.086561 -3.089E-05 0.87854 0.00031352 356.86219202378953 39.965 1.3873 35.435 35.14 36.528 -4.5294 289 98 5 0 0 0 0.2143 2 23949 23949;24082 15.248 4.9514 1 2389400000 12057 7290 8272 8442 13893;13894 13893 0.034066271030496864 FIKESGIQF 9 Unmodified _FIKESGIQF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MSMS AL20221201_MKP_PDAC_01 4 356.8629455566406 3 356.862325 1067.56515 NaN NaN NaN NaN NaN NaN NaN 40.529 1 36 35.5 36.5 -4.5294 0 0 0 0.46757 1 24212 24212 11.495 1.4208 1 12058 7290 8272 8442 13895 13895 0.034066271030496864 FIKESGIQF 9 Unmodified _FIKESGIQF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MSMS AL20221201_MKP_PDAC_01 4 356.8631591796875 3 356.862325 1067.56515 NaN NaN NaN NaN NaN NaN NaN 40.706 1 36.177 35.677 36.677 -4.5294 0 0 0 0.7453 1 24344 24344 4.897 1.31 1 12059 7290 8272 8442 13896 13896 0.034066271030496864 FIKESGIQF 9 Unmodified _FIKESGIQF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MSMS AL20221201_MKP_PDAC_01 4 356.8627319335938 3 356.862325 1067.56515 NaN NaN NaN NaN NaN NaN NaN 40.903 1 36.295 35.795 36.795 -4.6079 0 0 0 0.76439 1 24486 24486 4.5289 1.2476 1 12060 7290 8272 8442 13897 13897 0.034066271030496864 FIKLTRLPQ 9 Unmodified _FIKLTRLPQ_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.7850952148438 2 558.350409 1114.68626 0.97066 0.00054197 1.2918 0.00072129 2.2625 0.0012633 558.3513086669296 99.529 0.10876 93.353 93.29 93.399 -6.1757 9 6 2 0 0 0 0.209 1 66312 66312 7.2892 0 1 13191000 12061 8887 8273 8443 13898 13898 0.1335087453635424 FIKVLKYF 8 Unmodified _FIKVLKYF_ 0 0 0 REV__ENST00000472204.1_1_7:150769094-150771461:+|nuORF REV__ENST00000472204.1_1_7:150769094-150771461:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8242797851562 2 529.325871 1056.63719 1.051 0.0005563 -0.88905 -0.0004706 0.1619 8.5699E-05 529.3252920034422 101.26 0.13981 95.085 95.004 95.144 -6.1757 22 8 4 0 0 0 0.71616 1 67869 67869 15.768 1.8622 1 150370000 + 12062 21959 8274 8444 13899 13899 0.11113586247392959 FIKVQQHIH 9 Unmodified _FIKVQQHIH_ 0 0 0 REV__ENST00000568300.6_1_16:19775348-19867867:+|nuORF REV__ENST00000568300.6_1_16:19775348-19867867:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.8905639648438 3 383.889097 1148.64546 NaN NaN NaN NaN NaN NaN NaN 93.414 1 87.238 86.738 87.738 -6.1757 0 0 0 0.61214 1 61828 61828 12.241 0.60036 1 + 12063 22805 8275 8445 13900 13900 0.07708533216737123 FIKYKQKRQVL 11 Unmodified _FIKYKQKRQVL_ 0 0 0 REV__Charlie2b_dup1135|chr5:83584240-83585159:-|1.3862805360469577|0.411852314814177|1.75|179.0|34|3|sense REV__Charlie2b_dup1135|chr5:83584240-83585159:-|1.3862805360469577|0.411852314814177|1.75|179.0|34|3|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.3027038574219 3 484.301278 1449.882 1.1313 0.00054789 0.32768 0.00015869 1.459 0.00070659 484.30154107014437 88.578 0.36258 82.402 82.168 82.531 -6.1757 26 19 2 0 0 0 0.73114 1 58410 58410 1.3296 0 1 9238400 + 12064 16764 8276 8446 13901 13901 0.17505839990394634 FILCCFMRI 9 Unmodified _FILCCFMRI_ 0 0 0 REV__ENST00000397863.5_1_18:74725415-74725544:-|nuORF REV__ENST00000397863.5_1_18:74725415-74725544:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.287353515625 2 573.287051 1144.55955 1.0078 0.00057778 -1.3501 -0.00077399 -0.34227 -0.00019622 573.286462582736 80.748 0.36333 80.256 80.08 80.443 -0.49247 38 15 3 0 0 0 0.47846 1 44296 44296 4.756 0 1 2807900 + 12065 26546 8277 8447 13902 13902 -0.006948342762825632 FILEPPLDPG 10 Unmodified _FILEPPLDPG_ 0 0 0 ENST00000372833.5_1_10:75543024-75543216:+|nuORF ENST00000372833.5_1_10:75543024-75543216:+|nuORF ENST00000372833.5_1_10:75543024-75543216:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7597045898438 2 549.297507 1096.58046 0.22952 0.00012608 0.67727 0.00037202 0.90679 0.0004981 549.2981831959235 56.576 0.31381 56.576 56.45 56.763 0 30 13 3 0 0 0 0.22327 1 31423 31423 13.906 0 1 5630500 12066 12395 8278 8448 13903 13903 0.03603493900232024 FILFNAAGQ 9 Unmodified _FILFNAAGQ_ 0 0 0 REV__ENSG00000164142|ENST00000435205|FHIP1A REV__ENSG00000164142|ENST00000435205|FHIP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7635498046875 2 490.763635 979.512717 0.54704 0.00026847 0.017305 8.4925E-06 0.56435 0.00027696 490.7636751326494 74.95 0.29384 74.996 74.793 75.087 0.045959 21 13 2 0 0 0 0.078417 1 41304 41304 38.151 0 1 2910600 + 12067 21877 8279 8449 13904 13904 0.022140887600926362 FILLMVTHF 9 Oxidation (M) _FILLM(Oxidation (M))VTHF_ FILLM(1)VTHF FILLM(44)VTHF 0 0 1 ENSG00000180432|ENST00000316161|CYP8B1 ENSG00000180432|ENST00000316161|CYP8B1 ENSG00000180432|ENST00000316161|CYP8B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.81396484375 2 568.81227 1135.60999 0.66045 0.00037567 0.69005 0.00039251 1.3505 0.00076818 568.8126358683232 99.088 0.20109 92.912 92.807 93.009 -6.1757 36 11 4 0 0 0 0.052168 1 65856 65856 44.407 6.2558 1 357040000 12068 8901 8280 8450 13905 13905 1503 0.0476073464469664 FILPYIHKA 9 Unmodified _FILPYIHKA_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF;LPCAT3|p.L466V|1|0.29|ENSG00000111684|chr12:6977214-6977214|G/C|missense_variant ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8876342773438 3 367.886694 1100.63825 -0.26966 -9.9204E-05 2.5339 0.0009322 2.2643 0.000833 367.8870301568611 56.302 0.28408 56.233 56.075 56.36 -0.068741 31 13 3 0 0 0 0.23158 1 30632 30632 14.405 2.9107 1 4004000 12069 2815 8281 8451 13906 13906 0.09195800616316774 FILSHWEKY 9 Unmodified _FILSHWEKY_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8160400390625 2 611.816399 1221.61824 0.5415 0.0003313 -0.99531 -0.00060895 -0.45382 -0.00027765 611.8155946568252 60.105 0.22439 60.052 59.938 60.163 -0.053062 17 12 2 0 0 0 0.14 1 32782 32782 24.674 7.7316 1 5998000 12070 5002 8282 8452 13907 13907 0.016300048857146976 FILTYQYDLGY 11 Unmodified _FILTYQYDLGY_ 0 0 0 ENSG00000107020|ENST00000223864|PLGRKT ENSG00000107020|ENST00000223864|PLGRKT ENSG00000107020|ENST00000223864|PLGRKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.3469848632812 2 698.345186 1394.67582 -0.018034 -1.2594E-05 2.0901 0.0014596 2.0721 0.001447 698.3465004162965 41.256 0.28916 36.648 36.499 36.788 -4.6079 29 17 2 0 0 0 0.5229 1 24748 24748 15.248 3.0078 1 10703000 12071 2470 8283 8453 13908 13908 -0.005731976993729404 FIMERFPYYRE 11 Unmodified _FIMERFPYYRE_ 0 0 0 ENSG00000204612|ENST00000376708|FOXB2 ENSG00000204612|ENST00000376708|FOXB2 ENSG00000204612|ENST00000376708|FOXB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.587646484375 3 517.586867 1549.73877 NaN NaN NaN NaN NaN NaN NaN 87.704 1 87.757 87.257 88.257 0.053352 0 0 0 0.94181 1 48776 48776 1.2148 0.70888 1 12072 10309 8284 8454 13909 13909 -0.014109551829960765 FIMESQRL 8 Unmodified _FIMESQRL_ 0 0 0 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2719116210938 2 512.268227 1022.5219 0.17269 8.8464E-05 2.5812 0.0013223 2.7539 0.0014107 512.2692472705489 59.419 0.27772 58.928 58.75 59.028 -0.49079 20 12 2 0 0 0 0.75262 1 32335 32335 12.532 0 1 1047300 12073 3319 8285 8455 13910 13910 0.011541140541226014 FIMSSADW 8 Unmodified _FIMSSADW_ 0 0 0 REV__ENST00000361796.9_1_11:57529581-57556567:+|nuORF REV__ENST00000361796.9_1_11:57529581-57556567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7124938964844 2 478.712753 955.410954 0.55353 0.00026498 -0.98729 -0.00047263 -0.43376 -0.00020765 478.7121818452449 90.422 0.33752 89.928 89.758 90.095 -0.49457 24 15 3 0 0 0 0.67481 1 49415 49415 19.439 5.9311 1 1092700 + 12074 25940 8286 8456 13911 13911 -0.06853525653980341 FIMSSADW 8 Unmodified _FIMSSADW_ 0 0 0 REV__ENST00000361796.9_1_11:57529581-57556567:+|nuORF REV__ENST00000361796.9_1_11:57529581-57556567:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.712753 955.410954 0.55353 0.00026498 -0.98729 -0.00047263 -0.43376 -0.00020765 478.7121818452449 90.422 0.33752 89.928 89.758 90.095 -0.49457 0 0 NaN 19.439 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1092700 + 12075 25940 8286 8456 -0.06853525653980341 FINLALFDVK 10 Unmodified _FINLALFDVK_ 0 0 0 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant;ENSG00000147251|ENST00000276202|DOCK11 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.5382385253906 3 393.897258 1178.66995 0.86755 0.00034173 0.13027 5.1314E-05 0.99783 0.00039304 394.23194968048347 80.673 0.25581 74.498 74.369 74.624 -6.1757 15 13 2 0 0 0 0.23634 1 52975 52975 3.5871 0.59182 1 7557200 12076 240 8287 8457 13912 13912 0.08775748579591891 FINNAVHS 8 Unmodified _FINNAVHS_ 0 0 0 REV__nc|ENSG00000243710|Q96MR6-2|CFAP57 REV__nc|ENSG00000243710|Q96MR6-2|CFAP57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2311401367188 2 451.229959 900.445365 0.80009 0.00036102 1.3275 0.00059903 2.1276 0.00096005 451.23049326182274 59.149 0.28475 59.088 58.901 59.186 -0.060719 23 13 2 0 0 0 0.80143 1 32185 32185 5.7604 0 1 8580200 + 12077 24476 8288 8458 13913 13913 -0.008839414508543086 FINPKPITY 9 Unmodified _FINPKPITY_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8088989257812 2 546.808042 1091.60153 0.72335 0.00039554 0.41258 0.0002256 1.1359 0.00062114 546.8079726514778 47.437 0.21819 47.398 47.28 47.498 -0.038643 22 9 3 0 0 0 0.028475 1 25537 25537 56.177 34.43 1 2588200 12078 5547 8289 8459 13914 13914 0.0593950399975256 FINRFMHMF 9 Unmodified _FINRFMHMF_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8677673339844 3 414.86854 1241.58379 -0.52395 -0.00021737 -0.53623 -0.00022246 -1.0602 -0.00043983 415.20281005981485 20.009 0.065369 20.009 19.973 20.039 0 8 6 2 0 0 0 0.21874 1 10048 10048 1.1933 0.23107 1 930190 12079 463 8290 8460 13915 13915 -0.02733857798398276 FINRFMHMF 9 Unmodified _FINRFMHMF_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 414.86854 1241.58379 -0.43733 -0.00018143 0.40497 0.00016801 -0.032356 -1.3424E-05 414.8684678295211 19.879 0.095051 19.907 19.817 19.912 0.028357 -0.051227 0.00093702 NaN 1.1933 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 344760 12080 463 8290 8460 -0.02733857798398276 FINRNRHSR 9 Unmodified _FINRNRHSR_ 0 0 0 REV__ENSG00000188263|ENST00000695950|IL17REL REV__ENSG00000188263|ENST00000695950|IL17REL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.888916015625 3 400.555 1198.64317 -0.65455 -0.00026218 -0.68008 -0.00027241 -1.3346 -0.00053459 400.55459393225385 15.941 0.062522 15.941 15.912 15.974 0 18 14 2 0 0 0 0.61801 1 7723 7723 0.26902 0 1 415910 + 12081 23698 8291 8461 13916 13916 0.051794975316170166 FINRNRHSR 9 Unmodified _FINRNRHSR_ 0 0 0 REV__ENSG00000188263|ENST00000695950|IL17REL REV__ENSG00000188263|ENST00000695950|IL17REL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 400.555 1198.64317 -0.65455 -0.00026218 -0.68008 -0.00027241 -1.3346 -0.00053459 400.55459393225385 15.941 0.062522 15.941 15.912 15.974 0 0 0 NaN 0.26902 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 415910 + 12082 23698 8291 8461 0.051794975316170166 FIPAPTRYRPR 11 Unmodified _FIPAPTRYRPR_ 0 0 0 REV__ENST00000595310.1_1_12:48592579-48592777:+|nuORF REV__ENST00000595310.1_1_12:48592579-48592777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.5982360839844 3 458.598206 1372.77279 0.60791 0.00027879 -0.96248 -0.00044139 -0.35457 -0.0001626 458.93214462085086 67.369 0.5649 67.387 67.007 67.572 0.018028 58 28 3 0 0 0 0.70957 1 36896 36896 3.3557 0.92094 1 3947900 + 12083 29208 8292 8462 13917 13917 0.10131254090924813 FIPIHIRL 8 Unmodified _FIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.8215026855469 2 504.821287 1007.62802 0.30792 0.00015544 0.50373 0.00025429 0.81164 0.00040973 504.82140670664955 75.429 0.31949 75.475 75.307 75.627 0.045959 34 14 3 0 0 0 0.37649 1 41597 41597 46.921 14.804 1 7049800 12084 9836 8293 8463 13918 13918 0.12451237681727889 FIPIHIRL 8 Unmodified _FIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8225708007812 2 504.821287 1007.62802 1.4473 0.00073065 0.058073 2.9317E-05 1.5054 0.00075996 504.8215460128105 97.534 0.14186 91.358 91.261 91.403 -6.1757 12 7 2 0 0 0 0.18881 1 64623 64623 74.396 27.475 1 15139000 12085 9836 8293 8463 13919 13919 0.12451237681727889 FIPIHIRL 8 Unmodified _FIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8223876953125 2 504.821287 1007.62802 1.3537 0.00068336 -0.47795 -0.00024128 0.87572 0.00044208 504.8212025416341 98.094 0.34026 91.918 91.701 92.042 -6.1757 29 21 2 0 0 0 0.40035 1 65061 65061 44.407 6.2558 1 12729000 12086 9836 8293 8463 13920 13920 0.12451237681727889 FIQFLSEPTI 10 Unmodified _FIQFLSEPTI_ 0 0 0 ENSG00000133019|ENST00000676153|CHRM3 ENSG00000133019|ENST00000676153|CHRM3 ENSG00000133019|ENST00000676153|CHRM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8240966796875 2 597.823889 1193.63323 0.34045 0.00020353 -0.1334 -7.9748E-05 0.20705 0.00012378 597.8238889578248 70.193 0.21773 70.228 70.094 70.312 0.035507 28 10 3 0 0 0 0.29752 1 38609 38609 27.629 0 1 6677700 12087 4476 8294 8464 13921 13921 0.04415451963063788 FIQLNRISYP 10 Unmodified _FIQLNRISYP_ 0 0 0 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.748046875 2 625.84823 1249.68191 3.9348 0.0024626 0.8002 0.0005008 4.735 0.0029634 625.8496674621125 98.369 0.21387 98.341 98.218 98.432 -0.028282 10 7 2 0 0 0 0.56348 1 54622 54622 13.042 0.51092 1 773790 12088 1465 8295 8465 13922 13922 0.06705365322795842 FIQRKCLF 8 Unmodified _FIQRKCLF_ 0 0 0 ENST00000514842.5_1_4:39459094-39460113:-|nuORF ENST00000514842.5_1_4:39459094-39460113:-|nuORF ENST00000514842.5_1_4:39459094-39460113:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7962646484375 2 527.796955 1053.57936 1.1779 0.0006217 -1.3493 -0.00071217 -0.17141 -9.0468E-05 527.7963658924181 87.714 0.61282 81.538 81.237 81.85 -6.1757 84 33 3 0 0 0 0.65867 1 57818 57818 20.871 20.871 1 52439000 12089 14662 8296 8466 13923 13923 0.05471001050341329 FIQVPQDDDAR 11 Unmodified _FIQVPQDDDAR_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8656616210938 2 652.317491 1302.62043 0.83174 0.00054256 2.3547 0.001536 3.1865 0.0020786 652.3194111460184 69.163 0.15627 69.194 69.093 69.249 0.030922 20 7 4 0 0 0 0.28752 1 37993 37993 9.3831 5.7866 1 1751500 12090 9918 8297 8467 13924 13924 -0.018776111671513718 FIRDKFLL 8 Unmodified _FIRDKFLL_ 0 0 0 REV__ENSG00000137674|ENST00000260228|MMP20 REV__ENSG00000137674|ENST00000260228|MMP20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3203735351562 2 526.318577 1050.6226 NaN NaN NaN NaN NaN NaN NaN 88.069 1 88.123 87.623 88.623 0.053352 0 0 0 0.91837 1 48990 48990 21.747 0 1 + 12091 20259 8298 8468 13925 13925 0.09931514099275773 FIRDKFLL 8 Unmodified _FIRDKFLL_ 0 0 0 REV__ENSG00000137674|ENST00000260228|MMP20 REV__ENSG00000137674|ENST00000260228|MMP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3196411132812 2 526.318577 1050.6226 1.2395 0.00065236 0.017375 9.1448E-06 1.2569 0.00066151 526.3183417728279 100.24 0.34186 94.065 93.912 94.254 -6.1757 52 21 3 0 0 0 0.50364 2 66964 66964;67127 42.095 9.3089 1 195450000 + 12092 20259 8298 8468 13926;13927 13926 0.09931514099275773 FIRKPFIKF 9 Unmodified _FIRKPFIKF_ 0 0 0 nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4 nc|ENSG00000133107|Q9UBN4-6|TRPC4 nc|ENSG00000133107|Q9UBN4-6|TRPC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2505187988281 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 21.702 1 21.715 21.215 22.215 0.013796 0 0 0 0.85359 1 11128 11128 1.0715 0.61694 1 12093 4488 8299 8469 13928 13928 0.13816055295683327 FISALHSKKEI 11 Unmodified _FISALHSKKEI_ 0 0 0 REV__ENSG00000237765|ENST00000422728|FAM200B REV__ENSG00000237765|ENST00000422728|FAM200B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.871337890625 2 636.869163 1271.72377 0.11295 7.1936E-05 0.50015 0.00031853 0.6131 0.00039046 636.8693589020855 76.014 0.6027 75.535 75.232 75.835 -0.47945 45 25 2 0 0 0 0.7187 1 41765 41765 2.4985 0.21571 1 796040 + 12094 24435 8300 8470 13929 13929 0.0987792101134346 FISEFEHRV 9 Unmodified _FISEFEHRV_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5333862304688 3 388.532979 1162.57711 0.54394 0.00021134 0.33783 0.00013126 0.88177 0.0003426 388.53301225026615 40.429 0.1919 40.132 40.028 40.22 -0.29716 18 8 3 0 0 0 0.1685 1 21363 21363 19.626 13.434 1 3547500 12095 9391 8301 8471 13930 13930 0.0023224384622153593 FISEIIHQL 9 Unmodified _FISEIIHQL_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3109130859375 2 550.310949 1098.60735 0.74769 0.00041146 1.5768 0.00086774 2.3245 0.0012792 550.311817255247 71.631 0.25372 71.67 71.535 71.788 0.039024 28 11 3 0 0 0 0.0082661 1 39416 39416 92.491 40.223 1 4787500 12096 2662 8302 8472 13931 13931 0.06198602511426543 FISFNLWLF 9 Unmodified _FISFNLWLF_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|335|2|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|335|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8191528320312 2 593.81841 1185.62227 -0.040229 -2.3889E-05 0.98551 0.00058522 0.94528 0.00056133 593.8191717612367 93.4 0.42015 87.224 87.049 87.469 -6.1757 41 29 2 0 0 0 0.31356 1 61896 61896 17.113 1.2657 1 14227000 + 12097 29376 8303 8473 13932 13932 0.03688094379413087 FISGSCGC 8 Unmodified _FISGSCGC_ 0 0 0 nc|ENSG00000163646|P58418-1|CLRN1;ENSG00000163646|ENST00000327047|CLRN1 nc|ENSG00000163646|P58418-1|CLRN1 nc|ENSG00000163646|P58418-1|CLRN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8563537597656 2 387.151474 772.288396 NaN NaN NaN NaN NaN NaN NaN 26.577 1 26.577 26.077 27.077 0 0 0 0 0.97444 1 13668 13668 0.79363 0 1 12098 7041 8304 8474 13933 13933 -0.10685685657063004 FISKEILTI 9 Unmodified _FISKEILTI_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.323974609375 2 532.323525 1062.6325 1.1308 0.00060197 -0.79581 -0.00042363 0.33502 0.00017834 532.3228298796159 98.443 0.16129 92.267 92.163 92.324 -6.1757 24 10 3 0 0 0 0.008513 1 65281 65281 99.755 3.6444 1 73890000 12099 6830 8305 8475 13934 13934 0.10368657313983931 FISLPYLNI 9 Unmodified _FISLPYLNI_ 0 0 0 ENST00000529212.1_1_14:61509878-61512131:+|nuORF ENST00000529212.1_1_14:61509878-61512131:+|nuORF ENST00000529212.1_1_14:61509878-61512131:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.830810546875 2 540.310418 1078.60628 0.99885 0.00053969 -1.5317 -0.00082758 -0.53282 -0.00028789 540.3091637425778 89.705 0.20172 83.529 83.396 83.598 -6.1757 16 10 2 0 0 0 0.10271 1 59235 59235 39.95 10.868 1 8271400 12100 14870 8306 8476 13935 13935 0.07012388142493364 FISPVADP 8 Unmodified _FISPVADP_ 0 0 0 REV__ENSG00000161277|ENST00000292894|THAP8 REV__ENSG00000161277|ENST00000292894|THAP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 845.43994140625 1 845.440346 844.433069 -0.0060305 -5.0984E-06 -0.73335 -0.00062 -0.73938 -0.0006251 845.4397066529311 77.401 0.37477 77.401 77.186 77.561 0 64 28 3 0 0 0 0.21786 2 43056 42961;43056 67.035 16.093 1 12381000 + 12101 21593 8307 8477 13936;13937 13937 0.004630220860804002 FISPVADP 8 Unmodified _FISPVADP_ 0 0 0 REV__ENSG00000161277|ENST00000292894|THAP8 REV__ENSG00000161277|ENST00000292894|THAP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 845.43994140625 1 845.440346 844.433069 0.1028 8.691E-05 0.53577 0.00045296 0.63857 0.00053987 845.4407432851104 85.462 0.68596 79.287 79.008 79.694 -6.1757 90 41 3 0 0 0 0.28922 1 56139 56139 56.541 13.573 1 131740000 + 12102 21593 8307 8477 13938 13938 0.004630220860804002 FISPYPNEHY 10 Unmodified _FISPYPNEHY_ 0 0 0 REV__ENSG00000152217|ENST00000649279|SETBP1 REV__ENSG00000152217|ENST00000649279|SETBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.79150390625 2 633.793121 1265.57169 0.067246 4.262E-05 0.071111 4.507E-05 0.13836 8.769E-05 633.7913478198675 37.77 0.34262 37.77 37.604 37.947 0 37 16 3 0 0 0 0.48505 1 20113 20113 17.113 4.0704 1 3307500 + 12103 21107 8308 8478 13939 13939 -0.05047479736231253 FISRIETFLW 10 Unmodified _FISRIETFLW_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.3578491210938 2 656.358431 1310.70231 0.72943 0.00047877 -0.17345 -0.00011385 0.55598 0.00036492 656.3582262960817 83.303 0.28419 83.366 83.207 83.491 0.063171 25 10 3 0 0 0 0.20195 1 46059 46059 39.957 5.5556 1 13144000 + 12104 24028 8309 8479 13940 13940 0.059385359826137574 FISRKRIIAYV 11 Unmodified _FISRKRIIAYV_ 0 0 0 REV__nc|ENSG00000167861|Q8IV36-3|HID1 REV__nc|ENSG00000167861|Q8IV36-3|HID1 MSMS AL20221201_MKP_PDAC_01 4 683.3270874023438 2 683.421897 1364.82924 NaN NaN NaN NaN NaN NaN NaN 102.37 1 96.198 95.698 96.698 -6.1757 0 0 0 0.94144 1 68701 68701 1.4819 0.28856 1 + 12105 22257 8310 8480 13941 13941 0.16141881927615032 FISSLLCHLI 10 Unmodified _FISSLLCHLI_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.328857421875 2 573.323002 1144.63145 0.32802 0.00018806 4.0476 0.0023206 4.3756 0.0025086 573.3273568191418 73.777 0.37402 73.821 73.654 74.028 0.043983 42 17 4 0 0 0 0.31022 1 40628 40628 26.884 5.137 1 9937200 + 12106 17712 8311 8481 13942 13942 0.06492119673430352 FISTERNAL 9 Unmodified _FISTERNAL_ 0 0 0 REV__nc|ENSG00000105976|P08581-3|MET REV__nc|ENSG00000105976|P08581-3|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7817993164062 2 525.782556 1049.55056 0.97121 0.00051065 -0.16771 -8.8181E-05 0.8035 0.00042246 525.7844746310664 70.764 1.0498 70.8 70.312 71.361 0.035507 165 47 5 0 0 0 0.48152 1 38777 38777 8.5933 1.8701 1 6905300 + 12107 18479 8312 8482 13943 13943 0.027765549548803392 FITFAVSHY 9 Unmodified _FITFAVSHY_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|31|1|anti-sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|31|1|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7957763671875 2 542.776742 1083.53893 0.47013 0.00025518 -0.68894 -0.00037394 -0.21881 -0.00011877 542.7762788519505 63.293 0.56985 63.271 63.029 63.599 -0.021614 35 28 2 0 0 0 0.19758 1 34492 34492 13.508 0 1 4331200 + 12108 29403 8313 8483 13944 13944 0.0005035793155911961 FITLGAIGIGV 11 Unmodified _FITLGAIGIGV_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8255615234375 2 530.823692 1059.63283 0.20802 0.00011042 3.0315 0.0016092 3.2395 0.0017196 530.8257962527358 75.721 0.34627 75.769 75.494 75.84 0.047943 22 15 2 0 0 0 0.53099 1 41794 41794 14.838 4.0143 1 1696500 + 12109 19957 8314 8484 13945 13945 0.10540077033851958 FITMQETI 8 Unmodified _FITMQETI_ 0 0 0 ENST00000602540.5_1_12:76423673-76423751:-|nuORF ENST00000602540.5_1_12:76423673-76423751:-|nuORF ENST00000602540.5_1_12:76423673-76423751:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 987.5070190429688 1 982.491395 981.484119 0.90377 0.00088795 -0.68335 -0.00067139 0.22042 0.00021656 982.4909681842167 83.21 0.72713 77.034 76.715 77.442 -6.1757 172 38 6 0 0 0 0.71527 1 54701 54701 15.847 3.3156 1 283010000 12110 15820 8315 8485 13946 13946 -0.007363969313587404 FITRHRRKKRK 11 Unmodified _FITRHRRKKRK_ 0 0 0 REV__ENSG00000119614|ENST00000261980|VSX2 REV__ENSG00000119614|ENST00000261980|VSX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3262023925781 3 509.326932 1524.95897 -0.37191 -0.00018942 -0.68534 -0.00034906 -1.0573 -0.00053849 509.326619353564 103.66 0.09816 103.61 103.57 103.67 -0.047928 5 3 2 0 0 0 0.7453 1 57583 57583 0 0 1 1766500 + 12111 19197 8316 8486 13947 13947 0.21748496050076938 FIVAGLKWF 9 Unmodified _FIVAGLKWF_ 0 0 0 REV__ENSG00000115339|ENST00000392701|GALNT3 REV__ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.8790893554688 3 360.879539 1079.61679 -0.1316 -4.749E-05 -0.61943 -0.00022354 -0.75103 -0.00027103 360.8791360239916 54.208 0.35891 54.141 53.843 54.202 -0.066936 26 17 3 0 0 0 0.60285 1 29438 29438 1.1933 0 1 1583000 + 12112 18972 8317 8487 13948 13948 0.08016415587576375 FIVDVINMDY 10 Oxidation (M) _FIVDVINM(Oxidation (M))DY_ FIVDVINM(1)DY FIVDVINM(53)DY 0 0 1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.7966918945312 2 622.797014 1243.57948 0.79192 0.0004932 0.46041 0.00028674 1.2523 0.00077994 622.7972650903716 87.447 0.65178 81.271 80.825 81.476 -6.1757 60 35 2 0 0 0 0.06987 3 57569 57440;57569;57699 53.404 40.362 1 18070000 12113 1951 8318 8488 13949;13950;13951 13950 331 -0.032570885309951336 FIVDVINMDY 10 Unmodified _FIVDVINMDY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 614.3576049804688 2 614.799557 1227.58456 0.28305 0.00017402 -0.4585 -0.00028189 -0.17545 -0.00010787 614.7998165326476 99.693 0.14021 93.518 93.448 93.588 -6.1757 20 8 3 0 0 0 0.22811 1 66414 66414 14.838 0.93222 1 43684000 12114 1951 8318 8489 13952 13952 -0.020127846683635653 FIVECGVIFF 10 Carbamidomethyl (C) _FIVEC(Carbamidomethyl (C))GVIFF_ FIVEC(1)GVIFF FIVEC(46)GVIFF 0 1 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.813720703125 2 615.81501 1229.61547 0.50878 0.00031332 -1.4463 -0.00089063 -0.93749 -0.00057732 615.8142313730452 74.817 0.27895 74.863 74.682 74.961 0.045959 31 12 3 0 0 0 0.1028 1 41205 41205 46.021 13.715 1 6447900 + 12115 18566 8319 8490 13953 13953 1034 0.009844134365266655 FIVFKKQKQ 9 Unmodified _FIVFKKQKQ_ 0 0 0 REV__ENST00000325157.6_1_22:40161566-40217057:-|nuORF REV__ENST00000325157.6_1_22:40161566-40217057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2419738769531 3 389.241248 1164.70191 0.48073 0.00018712 1.6713 0.00065055 2.1521 0.00083767 389.2417589550903 58.679 0.36828 58.618 58.373 58.741 -0.060722 26 18 2 0 0 0 0.58145 1 31974 31974 2.4985 0 1 2187400 + 12116 25549 8320 8491 13954 13954 0.12615161053417978 FIVGLNKSNMK 11 Unmodified _FIVGLNKSNMK_ 0 0 0 REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF REV__ENST00000482481.1_1_1:94643162-94655618:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8518676757812 2 625.849916 1249.68528 3.9348 0.0024626 -1.8928 -0.0011846 2.042 0.001278 625.8496674621125 98.369 0.21387 98.341 98.218 98.432 -0.028282 10 7 2 0 0 0 0.50515 1 54678 54678 16.149 1.3108 1 773790 + 12117 20287 8321 8492 13955 13955 0.07042292105143133 FIVHFFSL 8 Unmodified _FIVHFFSL_ 0 0 0 ENSG00000186136|ENST00000334266|TAS2R42 ENSG00000186136|ENST00000334266|TAS2R42 ENSG00000186136|ENST00000334266|TAS2R42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2811889648438 2 505.278921 1008.54329 0.26351 0.00013315 2.0074 0.0010143 2.2709 0.0011475 505.27986162915437 49.479 0.27589 49.087 48.922 49.198 -0.3923 26 13 2 0 0 0 0.35156 1 26574 26574 49.669 2.0745 1 8311600 12118 9455 8322 8493 13956 13956 0.03935867145139582 FIVTMEDDF 9 Unmodified _FIVTMEDDF_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.748779296875 2 558.749533 1115.48451 NaN NaN NaN NaN NaN NaN NaN 70.429 1 70.429 69.929 70.929 0 0 0 0 0.84369 1 39242 39242 2.3027 0 1 12119 7326 8323 8494 13957 13957 -0.06861022002181016 FIVTWVWF 8 Unmodified _FIVTWVWF_ 0 0 0 REV__nc|ENSG00000153485|Q8N6I4-2|LYSET REV__nc|ENSG00000153485|Q8N6I4-2|LYSET MSMS AL20221201_MKP_PDAC_01 4 549.2965087890625 2 549.294571 1096.57459 NaN NaN NaN NaN NaN NaN NaN 63.731 1 57.555 57.055 58.055 -6.1757 0 0 0 0.70013 1 41228 41228 28.173 1.2896 1 + 12120 21173 8324 8495 13958 13958 0.03016440179226265 FIWAFLPHVCP 11 Unmodified _FIWAFLPHVCP_ 0 0 0 ENST00000429967.2_1_X:128781414-128781876:-|nuORF ENST00000429967.2_1_X:128781414-128781876:-|nuORF ENST00000429967.2_1_X:128781414-128781876:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.34375 2 665.344269 1328.67399 NaN NaN NaN NaN NaN NaN NaN 88.561 1 88.561 88.061 89.061 0 0 0 0 0.94144 1 49016 49016 1.4819 0.28856 1 12121 13229 8325 8496 13959 13959 0.02279514801671212 FIWENIHTL 9 Unmodified _FIWENIHTL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.80859375 2 586.808574 1171.60259 0.41491 0.00024347 1.2531 0.00073535 1.668 0.00097882 586.8087212065526 75.616 0.29853 75.664 75.474 75.773 0.047951 32 13 3 0 0 0 0.047196 1 41674 41674 46.021 24.274 1 2394500 12122 6155;16276 8326 8497 13960 13960 0.023657183686509597 FIWRRMKTMWF 11 Unmodified _FIWRRMKTMWF_ 0 0 0 ENST00000442563.5_2_7:66235310-66235424:+|nuORF ENST00000442563.5_2_7:66235310-66235424:+|nuORF ENST00000442563.5_2_7:66235310-66235424:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 801.4151000976562 2 801.415234 1600.81592 -0.049305 -3.9514E-05 -0.94749 -0.00075933 -0.99679 -0.00079884 801.4141123355913 101.79 0.12798 101.67 101.61 101.74 -0.11613 13 5 3 0 0 0 0.74157 1 55554 55554 0.35063 0.043601 1 2411700 12123 13410 8327 8498 13961 13961 0.03953984552322254 FIWYRRYMRDR 11 Unmodified _FIWYRRYMRDR_ 0 0 0 REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 831.3917236328125 2 831.427719 1660.84088 NaN NaN NaN NaN NaN NaN NaN 108.08 1 108.03 107.53 108.53 -0.047607 0 0 0 0.9435 1 59862 59862 0 0 1 + 12124 24031 8328 8499 13962 13962 0.036897556792609976 FIYDCLKLF 9 Unmodified _FIYDCLKLF_ 0 0 0 REV__ENST00000482556.5_1_20:47241658-47241766:-|nuORF REV__ENST00000482556.5_1_20:47241658-47241766:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8734130859375 3 387.871944 1160.594 NaN NaN NaN NaN NaN NaN NaN 18.704 1 18.71 18.21 19.21 0.0060463 0 0 0 0.82396 1 9488 9488 2.7352 0.99292 1 + 12125 27723 8329 8500 13963 13963 0.020130284078049954 FIYGWQLTLLL 11 Unmodified _FIYGWQLTLLL_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.262451171875 3 456.26383 1365.76966 1.2505 0.00057054 -2.7358 -0.0012482 -1.4853 -0.00067769 456.2624972897574 100.29 0.15706 94.114 94.044 94.202 -6.1757 17 9 3 0 0 0 0.48742 1 67049 67049 17.049 0.77403 1 21291000 12126 1413;310 8330 8501 13964 13964 0.10140566193581435 FIYHGEVPQA 10 Unmodified _FIYHGEVPQA_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7904663085938 2 580.790381 1159.56621 NaN NaN NaN NaN NaN NaN NaN 42.382 1 42.075 41.575 42.575 -0.30682 0 0 0 0.049482 1 22510 22510 57.471 34.735 1 12127 8844 8331 8502 13965 13965 -0.007191585280452273 FIYKEDDEEQE 11 Unmodified _FIYKEDDEEQE_ 0 0 0 REV__nc|ENSG00000149294|P13591-6|NCAM1 REV__nc|ENSG00000149294|P13591-6|NCAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 722.809326171875 2 722.809362 1443.60417 NaN NaN NaN NaN NaN NaN NaN 1.0868 1 1.0868 0.58682 1.5868 0 0 0 0 0.9435 1 527 527 0 0 1 + 12128 20990 8332 8503 13966 13966 -0.09988781914557876 FIYLGNSVFI 10 Unmodified _FIYLGNSVFI_ 0 0 0 ENST00000531925.5_1_19:1789538-1806275:-|nuORF;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ENST00000533107.3_1_19:1799652-1806029:-|nuORF ENST00000531925.5_1_19:1789538-1806275:-|nuORF ENST00000531925.5_1_19:1789538-1806275:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5495910644531 3 391.549859 1171.62775 0.60048 0.00023512 -1.8063 -0.00070724 -1.2058 -0.00047213 391.54934018653466 40.509 0.29641 40.205 40.022 40.318 -0.30304 27 13 3 0 0 0 0.48505 1 21399 21399 14.957 0.55178 1 2060400 12129 4195 8333 8504 13967 13967 0.04879773171251145 FIYQALLEYYL 11 Unmodified _FIYQALLEYYL_ 0 0 0 ENSG00000132334|ENST00000254667|PTPRE;ENST00000463727.1_1_10:129868414-129869560:+|nuORF;nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE ENSG00000132334|ENST00000254667|PTPRE ENSG00000132334|ENST00000254667|PTPRE MSMS AL20221201_MKP_PDAC_01 4 718.3640747070312 2 718.379029 1434.7435 NaN NaN NaN NaN NaN NaN NaN 100.25 1 94.079 93.579 94.579 -6.1757 0 0 0 0.85601 1 66995 66995 9.3831 0.63772 1 12130 4394 8334 8505 13968 13968 0.0435225223143334 FIYSCVYED 9 Unmodified _FIYSCVYED_ 0 0 0 ENSG00000183690|ENST00000420999|EFHC2;nc|ENSG00000183690|Q5JST6-2|EFHC2;ENST00000343571.3_1_X:44008043-44084947:-|nuORF ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.1638793945312 3 380.163564 1137.46886 0.26931 0.00010238 -1.0728 -0.00040785 -0.80352 -0.00030547 380.16311286159134 59.577 0.23301 59.523 59.362 59.595 -0.053059 16 11 2 0 0 0 0.58466 1 32462 32462 1.1933 0 1 2657600 12131 9178 8335 8506 13969 13969 -0.09437308519204635 FIYSRPSYLY 10 Unmodified _FIYSRPSYLY_ 0 0 0 ENSG00000167825|ENST00000301532|OR5I1 ENSG00000167825|ENST00000301532|OR5I1 ENSG00000167825|ENST00000301532|OR5I1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8348999023438 2 654.834788 1307.65502 0.68534 0.00044879 -0.61515 -0.00040282 0.070195 4.5966E-05 654.8345699500181 78.284 0.46947 78.337 78.156 78.625 0.052452 48 19 4 0 0 0 0.43662 1 43284 43284 17.113 2.2746 1 18550000 12132 7674 8336 8507 13970 13970 0.013502567116347564 FIYYLIFLYLL 11 Unmodified _FIYYLIFLYLL_ 0 0 0 REV__ENST00000523744.2_2_8:17924585-17924894:-|nuORF REV__ENST00000523744.2_2_8:17924585-17924894:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 740.9260864257812 2 740.928157 1479.84176 NaN NaN NaN NaN NaN NaN NaN 98.756 1 92.58 92.08 93.08 -6.1757 0 0 0 0.91154 1 65557 65557 6.7232 1.8262 1 + 12133 28319 8337 8508 13971 13971 0.12103480547284562 FKAFPGKG 8 Unmodified _FKAFPGKG_ 0 0 0 ENSG00000166398|ENST00000299505|GARRE1;ENST00000588974.1_1_19:34839831-34843857:+|nuORF ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2433776855469 2 426.242338 850.470124 1.0596 0.00045165 0.2931 0.00012493 1.3527 0.00057658 426.24237807393143 49.748 0.23745 49.699 49.589 49.827 -0.048828 24 11 3 0 0 0 0.78849 1 26897 26897 9.3474 3.587 1 2743000 12134 7481 8338 8509 13972 13972 0.038907384225240094 FKALFLLRF 9 Unmodified _FKALFLLRF_ 0 0 0 REV__ENST00000393585.6_1_4:185550570-185552947:-|nuORF REV__ENST00000393585.6_1_4:185550570-185552947:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5418395996094 3 385.574339 1153.70119 1.563 0.00060264 -0.71731 -0.00027658 0.84566 0.00032606 385.5740966790201 20.811 0.30318 18.118 17.941 18.244 -2.693 27 19 2 0 0 0 0.21835 1 11042 11042 2.2828 1.0894 1 1559900 + 12135 26422 8339 8510 13973 13973 0.1304836640438225 FKALGGKG 8 Unmodified _FKALGGKG_ 0 0 0 ENST00000595881.1_1_19:50017122-50017545:+|nuORF;ENST00000598936.1_1_19:50016657-50017545:+|nuORF;ENST00000595677.5_1_19:50017155-50024968:+|nuORF;ENST00000452439.1_1_19:50016657-50027781:+|nuORF;ENSG00000104870|ENST00000221466|FCGRT ENST00000595881.1_1_19:50017122-50017545:+|nuORF ENST00000595881.1_1_19:50017122-50017545:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.234375 2 389.234513 776.454474 NaN NaN NaN NaN NaN NaN NaN 18.99 1 19.013 18.513 19.513 0.023106 0 0 0 0.97444 1 9556 9556 2.3027 1.5091 1 12136 15762 8340 8511 13974 13974 0.057304519054810044 FKALGGKG 8 Unmodified _FKALGGKG_ 0 0 0 ENST00000595881.1_1_19:50017122-50017545:+|nuORF;ENST00000598936.1_1_19:50016657-50017545:+|nuORF;ENST00000595677.5_1_19:50017155-50024968:+|nuORF;ENST00000452439.1_1_19:50016657-50027781:+|nuORF;ENSG00000104870|ENST00000221466|FCGRT ENST00000595881.1_1_19:50017122-50017545:+|nuORF ENST00000595881.1_1_19:50017122-50017545:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1969909667969 2 389.234513 776.454474 NaN NaN NaN NaN NaN NaN NaN 19.003 1 19.026 18.526 19.526 0.023106 0 0 0 0.97444 1 9563 9563 2.3027 1.5091 1 12137 15762 8340 8511 13975 13975 0.057304519054810044 FKDFDFLDVEL 11 Unmodified _FKDFDFLDVEL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.3429565429688 2 694.342643 1386.67073 -0.014651 -1.0173E-05 0.86988 0.00060399 0.85523 0.00059382 694.3432054809075 95.574 0.40324 95.574 95.397 95.8 0 76 26 4 0 0 0 0.68649 1 52853 52853 6.6304 1.3335 1 3114700 12138 1160 8341 8512 13976 13976 -0.0071350156201788195 FKDVVVEF 8 Unmodified _FKDVVVEF_ 0 0 0 nc|ENSG00000149054|Q9UL58-2|ZNF215;ENSG00000149054|ENST00000278319|ZNF215 nc|ENSG00000149054|Q9UL58-2|ZNF215 nc|ENSG00000149054|Q9UL58-2|ZNF215 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 982.52685546875 1 982.52441 981.517133 0.046889 4.607E-05 0.94819 0.00093162 0.99508 0.00097769 982.5242328386705 69.078 0.18935 68.597 68.485 68.675 -0.48071 10 7 2 0 0 0 0.71527 1 37760 37760 15.847 4.2069 1 527300 12139 5979 8342 8513 13977 13977 0.025635531830062064 FKDYTLLY 8 Unmodified _FKDYTLLY_ 0 0 0 ENSG00000134504|ENST00000580059|KCTD1;ENST00000577255.1_1_18:24039580-24056655:-|nuORF;nc|ENSG00000134504|Q719H9|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.8015747070312 2 531.778951 1061.54335 1.8038 0.00095924 3.4942 0.0018581 5.298 0.0028174 531.7816649792929 41.757 0.17287 37.149 37.077 37.25 -4.6079 18 10 2 0 0 0 8.7369 1 25114 25114 7.2892 0 1 25931000 12140 4614 8343 8514 13978 13978 0.015038223544706852 FKEALHDL 8 Unmodified _FKEALHDL_ 0 0 0 REV__nc|ENSG00000072110|P12814-2|ACTN1 REV__nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7624816894531 2 486.761092 971.507631 1.0339 0.00050324 3.4961 0.0017018 4.53 0.002205 486.7623070447832 72.053 0.31933 65.878 65.745 66.064 -6.1757 32 16 3 0 0 0 0.55032 1 47133 47133 30.225 1.738 1 36874000 + 12141 17507 8344 8515 13979 13979 0.02073784897470432 FKELENWLHDR 11 Unmodified _FKELENWLHDR_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 744.3776245117188 2 743.875508 1485.73646 -0.27938 -0.00020783 1.076 0.00080039 0.79659 0.00059256 744.3781578691503 22.912 0.21354 22.924 22.783 22.997 0.012396 24 10 3 0 0 0 0.69316 1 11644 11644 4.897 0 1 7096000 + 12142 22713 8345 8516 13980 13980 0.013023324035657424 FKFDCILG 8 Unmodified _FKFDCILG_ 0 0 0 REV__nc|ENSG00000062194|Q86WP2-4|GPBP1 REV__nc|ENSG00000062194|Q86WP2-4|GPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7393798828125 2 471.741314 941.468075 0.042247 1.993E-05 -2.3253 -0.0010969 -2.2831 -0.001077 471.74021728278603 38.906 0.44953 38.619 38.454 38.904 -0.28687 27 19 2 0 0 0 0.58902 1 20522 20522 26.884 3.7352 1 2032100 + 12143 17338 8346 8517 13981 13981 -0.0050005837759954375 FKIFPKRIF 9 Unmodified _FKIFPKRIF_ 0 0 0 REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4 REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2503051757812 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 47.359 1 47.32 46.82 47.82 -0.038643 0 0 0 0.85261 1 25514 25514 1.1933 0 1 + 12144 19908 8347 8518 13982 13982 0.13816055295683327 FKIIEGHKQEQ 11 Unmodified _FKIIEGHKQEQ_ 0 0 0 REV__ENST00000395246.5_1_5:130694918-130695191:+|nuORF REV__ENST00000395246.5_1_5:130694918-130695191:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.914306640625 3 452.91386 1355.71975 0.31178 0.00014121 0.08389 3.7995E-05 0.39567 0.0001792 452.9139025294133 23.767 0.28212 20.939 20.791 21.073 -2.8273 30 17 2 0 0 0 0.65096 1 12823 12823 8.7518 1.6501 1 5867500 + 12145 26470 8348 8519 13983 13983 0.05611831517626342 FKIVEKVKE 9 Unmodified _FKIVEKVKE_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2326965332031 3 373.897258 1118.66995 1.1097 0.00041492 0.25101 9.3852E-05 1.3607 0.00050877 373.89720722923 29.702 0.30996 26.4 26.257 26.567 -3.3016 38 16 3 0 0 0 0.011291 1 16679 16679 62.869 0.088491 1 120530000 12146 6095 8349 8520 13984 13984 0.11535748579603933 FKLGPLFAR 9 Unmodified _FKLGPLFAR_ 0 0 0 REV__ENSG00000182272|ENST00000329962|B4GALNT4 REV__ENSG00000182272|ENST00000329962|B4GALNT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.7047119140625 3 350.214922 1047.62294 -0.25279 -8.853E-05 -2.8915 -0.0010126 -3.1443 -0.0011012 350.2140321174972 32.424 0.076893 32.454 32.389 32.466 0.029743 4 2 2 0 0 0 0.21834 1 16999 16999 0.96228 0.56156 1 428270 + 12147 23259 8350 8521 13985 13985 0.10102933819121063 FKLHQVWE 8 Unmodified _FKLHQVWE_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7938232421875 2 543.790184 1085.56581 0.2196 0.00011942 1.2701 0.00069064 1.4897 0.00081006 543.79119008887 41.415 1.447 36.807 36.339 37.786 -4.6079 193 92 4 0 0 0 0.58902 1 25358 25358 26.884 0 1 174400000 12148 3369 8351 8522 13986 13986 0.026454665427536384 FKLPHLQFLEL 11 Unmodified _FKLPHLQFLEL_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.9041748046875 2 692.903005 1383.79146 NaN NaN NaN NaN NaN NaN NaN 28.497 1 28.527 28.027 29.027 0.029564 0 0 0 0.94307 1 14839 14839 0.30703 0 1 12149 10156 8352 8523 13987 13987 0.11491370942144385 FKLRKTQFLNY 11 Unmodified _FKLRKTQFLNY_ 0 0 0 ENST00000264255.7_1_2:99935913-99936123:-|nuORF ENST00000264255.7_1_2:99935913-99936123:-|nuORF ENST00000264255.7_1_2:99935913-99936123:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.4619140625 4 365.212044 1456.81907 -0.13158 -4.8054E-05 -0.58373 -0.00021318 -0.71531 -0.00026124 365.21207963564075 37.704 0.59628 37.721 37.346 37.942 0.01704 99 28 5 0 0 0 0.70435 1 19915 19915 3.8459 2.3908 1 72634000 12150 11310 8353 8524 13988 13988 0.1089327420236259 FKLTSLRKK 9 Unmodified _FKLTSLRKK_ 0 0 0 REV__nc|ENSG00000114487|Q86VD1-2|MORC1 REV__nc|ENSG00000114487|Q86VD1-2|MORC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8638916015625 2 560.863683 1119.71281 1.7748 0.00099542 -0.53098 -0.00029781 1.2438 0.00069761 560.8630995086621 104.66 0.10012 98.488 98.438 98.538 -6.1757 8 5 2 0 0 0 0.58865 1 70091 70091 2.0598 0 1 6199000 + 12151 18917 8354 8525 13989 13989 0.15774563427680732 FKNLHHLELL 10 Unmodified _FKNLHHLELL_ 0 0 0 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 ENSG00000188306|ENST00000340806|LRRIQ4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.9122619628906 3 421.91179 1262.71354 1.7517 0.00073906 -0.52575 -0.00022182 1.2259 0.00051724 422.24566817811285 97.508 0.19893 91.333 91.186 91.384 -6.1757 18 10 2 0 0 0 0.41822 1 64593 64593 20.581 0.95498 1 14960000 12152 9645 8355 8526 13990 13990 0.09269358076767276 FKNPIIEKY 9 Unmodified _FKNPIIEKY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5537719726562 3 384.553492 1150.63865 -0.040346 -1.5515E-05 0.12092 4.6498E-05 0.08057 3.0983E-05 384.5535985923296 41.364 0.30511 41.061 40.909 41.214 -0.30304 34 14 3 0 0 0 0.06294 1 21891 21891 32.037 16.299 1 6869200 12153 16067;16068 8356 8527 13991 13991 0.06935175545527272 FKNPIIEKY 9 Unmodified _FKNPIIEKY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3271484375 2 576.326599 1150.63865 0.059218 3.4129E-05 0.27845 0.00016048 0.33767 0.00019461 576.3270108518774 41.418 0.24649 41.115 40.946 41.192 -0.30304 19 11 2 0 0 0 0.32235 1 21955 21955 16.149 7.5558 1 2085900 12154 16067;16068 8356 8527 13992 13992 0.06935175545527272 FKNPIIEKY 9 Unmodified _FKNPIIEKY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8880615234375 3 384.553492 1150.63865 0.12789 4.9181E-05 0.23686 9.1085E-05 0.36475 0.00014027 384.55359958772993 41.044 0.36985 41.042 40.871 41.241 -0.0017929 30 17 2 0 0 0 0.20428 1 21930 21930 16.566 8.6205 1 7545900 12155 16067;16068 8356 8527 13993 13993 0.06935175545527272 FKNPIIEKY 9 Unmodified _FKNPIIEKY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.326904296875 2 576.326599 1150.63865 0.3571 0.00020581 0.5675 0.00032707 0.9246 0.00053287 576.8282092610617 41.024 0.28886 41.023 40.912 41.2 -0.0017929 18 13 2 0 0 0 0.20507 1 21974 21974 22.658 13.275 1 1998800 12156 16067;16068 8356 8527 13994 13994 0.06935175545527272 FKNPIIEKY 9 Unmodified _FKNPIIEKY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.540771484375 3 384.553492 1150.63865 1.1297 0.00043443 1.7623 0.00067768 2.8919 0.0011121 384.55412699712434 45.656 0.58834 40.701 40.41 40.999 -4.9549 90 39 3 0 0 0 0.18054 1 28063 28063 21.59 9.4154 1 30578000 12157 16067;16068 8356 8527 13995 13995 0.06935175545527272 FKPDRRHPLY 10 Unmodified _FKPDRRHPLY_ 0 0 0 ENST00000475928.1_1_2:175275226-175292620:+|nuORF;nc|ENSG00000144306|Q0VDG4-2|SCRN3;ENSG00000144306|ENST00000272732|SCRN3 ENST00000475928.1_1_2:175275226-175292620:+|nuORF ENST00000475928.1_1_2:175275226-175292620:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.5789794921875 3 443.578923 1327.71494 -0.60508 -0.0002684 -0.78932 -0.00035012 -1.3944 -0.00061853 443.9129484959257 17.709 0.094219 17.723 17.684 17.778 0.013865 32 18 2 0 0 0 0.71981 1 8819 8819 0.69767 0.53834 1 684140 12158 5598 8357 8528 13996 13996 0.06418992165504278 FKPFQKVPIL 10 Unmodified _FKPFQKVPIL_ 0 0 0 REV__ENSG00000131773|ENST00000355849|KHDRBS3 REV__ENSG00000131773|ENST00000355849|KHDRBS3 MSMS AL20221201_MKP_PDAC_01 4 406.5441284179688 3 406.253265 1215.73797 NaN NaN NaN NaN NaN NaN NaN 15.378 1 12.85 12.35 13.35 -2.5273 0 0 0 0.98857 1 7884 7884 1.9064 0 1 + 12159 19811 8358 8529 13997 13997 0.13872618230288936 FKQEWFDRF 9 Unmodified _FKQEWFDRF_ 0 0 0 REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826599121094 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 47.637 1 47.285 46.785 47.785 -0.3526 0 0 0 0.85798 1 25540 25540 0.23584 0 1 + 12160 24067 8359 8530 13998 13998 -0.019437807453869027 FKRGPVPP 8 Unmodified _FKRGPVPP_ 0 0 0 REV__ENST00000324849.8_1_8:17104467-17104572:+|nuORF REV__ENST00000324849.8_1_8:17104467-17104572:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2677001953125 2 449.268887 896.523222 NaN NaN NaN NaN NaN NaN NaN 102.27 1 102.23 101.73 102.73 -0.045853 0 0 0 0.97444 1 56810 56810 0.69038 0 1 + 12161 25540 8360 8531 13999 13999 0.07082116205174316 FKRIFEAFKL 10 Unmodified _FKRIFEAFKL_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5916442871094 3 433.592169 1297.75468 0.49576 0.00021496 -1.4347 -0.00062207 -0.93893 -0.00040711 433.59149541154295 83.531 0.20945 83.034 82.89 83.099 -0.49751 11 8 2 0 0 0 0.71981 1 45744 45744 0.69767 0.46182 1 295580 12162 1469 8361 8532 14000 14000 0.11771119116224327 FKRIFEAFKL 10 Unmodified _FKRIFEAFKL_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 433.592169 1297.75468 0.18903 8.1963E-05 -1.4447 -0.00062639 -1.2556 -0.00054443 433.5916546237283 83.042 0.18814 83.042 82.888 83.076 0 0.0041354 -7.7821E-06 NaN 0.69767 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 487510 12163 1469 8361 8532 0.11771119116224327 FKRLRQERKQA 11 Unmodified _FKRLRQERKQA_ 0 0 0 REV__ENST00000476231.1_1_1:25558504-25558958:-|nuORF REV__ENST00000476231.1_1_1:25558504-25558958:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2922668457031 3 487.291664 1458.85316 1.5778 0.00076887 0.28316 0.00013798 1.861 0.00090685 487.29164819030007 109.9 0.042732 103.72 103.69 103.74 -6.1757 11 9 2 0 0 0 0.74429 1 73378 73378 0.094841 0.011491 1 2485500 + 12164 19119 8362 8533 14001 14001 0.1420911541397345 FKRVKWNKRR 10 Unmodified _FKRVKWNKRR_ 0 0 0 REV__ENSG00000115956|ENST00000234313|PLEK REV__ENSG00000115956|ENST00000234313|PLEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 709.9376831054688 2 709.436204 1416.85786 1.2973 0.00092035 -3.366 -0.002388 -2.0687 -0.0014676 709.4333086788021 104.99 0.10679 98.812 98.749 98.856 -6.1757 13 7 2 0 0 0 0.71276 1 70269 70269 1.4819 0 1 35444000 + 12165 19016 8363 8534 14002 14002 0.16610044347385156 FKRYYEMFI 9 Unmodified _FKRYYEMFI_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8851318359375 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 18.081 1 18.087 17.587 18.587 0.0060463 0 0 0 0.85359 1 9149 9149 1.0715 0.10919 1 + 12166 22747 8364 8535 14003 14003 0.0012721818509362492 FKRYYEMFI 9 Unmodified _FKRYYEMFI_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8856506347656 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 34.594 1 34.622 34.122 35.122 0.027401 0 0 0 0.86031 1 18244 18244 0.23584 0.028987 1 + 12167 22747 8364 8535 14004 14004 0.0012721818509362492 FKSLLIQEL 9 Unmodified _FKSLLIQEL_ 0 0 0 ENST00000503112.1_1_5:6372618-6374583:-|nuORF;ENSG00000133398|ENST00000255764|MED10 ENST00000503112.1_1_5:6372618-6374583:-|nuORF ENST00000503112.1_1_5:6372618-6374583:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.83056640625 2 545.828975 1089.6434 1.1108 0.00060628 0.090688 4.95E-05 1.2014 0.00065578 545.8292535446598 96.288 0.42725 90.113 89.877 90.305 -6.1757 51 25 3 0 0 0 0.013609 1 63840 63840 70.332 5.097 1 62499000 12168 4512 8365 8536 14005 14005 0.10216059688286805 FKSMLEDDLK 10 Unmodified _FKSMLEDDLK_ 0 0 0 nc|ENSG00000155966|P51816-7|AFF2;nc|ENSG00000155966|P51816-3|AFF2;ENSG00000155966|ENST00000370460|AFF2 nc|ENSG00000155966|P51816-7|AFF2 nc|ENSG00000155966|P51816-7|AFF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2100830078125 3 409.209285 1224.60602 -0.15815 -6.4717E-05 1.5987 0.00065422 1.4406 0.0005895 409.2099434670208 29.085 0.26476 29.115 29.009 29.274 0.030106 22 10 3 0 0 0 0.40136 1 15166 15166 18.721 0 1 5457900 12169 6420 8366 8537 14006 14006 0.0027060036034072255 FKSSLSPSLLF 11 Unmodified _FKSSLSPSLLF_ 0 0 0 REV__ENST00000542605.1_1_12:6788557-6798678:-|nuORF REV__ENST00000542605.1_1_12:6788557-6798678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3477172851562 2 613.344989 1224.67542 NaN NaN NaN NaN NaN NaN NaN 100 1 99.968 99.468 100.47 -0.036301 0 0 0 0.79773 1 55546 55546 12.175 0.53445 1 + 12170 28622 8367 8538 14007 14007 0.07207427371417907 FKTFYMVL 8 Unmodified _FKTFYMVL_ 0 0 0 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.781494140625 2 524.780439 1047.54633 0.36039 0.00018913 1.0511 0.00055157 1.4114 0.0007407 524.7808306171012 70.08 0.5172 70.08 69.839 70.356 0 165 56 4 0 0 0 0.80232 1 39172 39172 5.2307 0.90143 1 28261000 12171 547 8368 8539 14008 14008 0.024453742076275375 FKTPDPDPVY 10 Unmodified _FKTPDPDPVY_ 0 0 0 REV__ENST00000482800.5_1_3:57261911-57301862:+|nuORF REV__ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7886962890625 2 589.790047 1177.56554 -0.062223 -3.6698E-05 0.047992 2.8305E-05 -0.014231 -8.3931E-06 589.7898243948201 35.747 0.34212 35.747 35.554 35.896 0 39 16 3 0 0 0 0.52097 1 18978 18978 15.248 1.3424 1 6974100 + 12172 21385 8369 8540 14009 14009 -0.016139979677518568 FKTTLNEFKNR 11 Unmodified _FKTTLNEFKNR_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5900268554688 3 466.589376 1396.7463 0.16451 7.676E-05 1.4732 0.00068738 1.6377 0.00076414 466.5896458380133 54.159 0.23536 53.692 53.567 53.803 -0.46664 27 11 3 0 0 0 0.69316 1 29355 29355 2.2527 0 1 2882100 12173 1990 8370 8541 14010 14010 0.06379520408950157 FKTTLNEFKNR 11 Unmodified _FKTTLNEFKNR_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.5895385742188 3 466.589376 1396.7463 0.49482 0.00023088 0.48791 0.00022765 0.98273 0.00045853 466.5895127576745 82.339 1.2802 76.164 75.602 76.883 -6.1757 191 71 3 0 0 0 0.66428 2 53964 53832;53964 3.8459 1.9288 1 37367000 12174 1990 8370 8541 14011;14012 14012 0.06379520408950157 FKTWEEQEDNF 11 Unmodified _FKTWEEQEDNF_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MSMS AL20221201_MKP_PDAC_01 4 736.8179931640625 2 736.820064 1471.62557 NaN NaN NaN NaN NaN NaN NaN 40.325 1 35.796 35.296 36.296 -4.5294 0 0 0 0.93613 1 24068 24068 5.2969 2.3016 1 12175 2301 8371 8542 14013 14013 -0.09137352095171991 FKTWKESQR 9 Unmodified _FKTWKESQR_ 0 0 0 ENSG00000256797|ENST00000535540|KLRF2 ENSG00000256797|ENST00000535540|KLRF2 ENSG00000256797|ENST00000535540|KLRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3231201171875 2 605.32238 1208.63021 0.45049 0.00027269 -0.0097756 -5.9174E-06 0.44071 0.00026677 605.3222957600459 30.684 0.21766 30.581 30.447 30.665 -0.10269 18 8 3 0 0 0 0.25681 1 15926 15926 19.257 0.88389 1 3576500 12176 10804 8372 8543 14014 14014 0.0342362162889458 FKTWKESQR 9 Unmodified _FKTWKESQR_ 0 0 0 ENSG00000256797|ENST00000535540|KLRF2 ENSG00000256797|ENST00000535540|KLRF2 ENSG00000256797|ENST00000535540|KLRF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 605.32238 1208.63021 0.45049 0.00027269 -0.0097756 -5.9174E-06 0.44071 0.00026677 605.3222957600459 30.684 0.21766 30.581 30.447 30.665 -0.10269 0.04161 -4.1904E-05 NaN 19.257 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3576500 12177 10804 8372 8543 0.0342362162889458 FKWMYFYFRYP 11 Unmodified _FKWMYFYFRYP_ 0 0 0 REV__ENSG00000197106|ENST00000331565|SLC6A17 REV__ENSG00000197106|ENST00000331565|SLC6A17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.3978881835938 2 824.39449 1646.77443 NaN NaN NaN NaN NaN NaN NaN 56.785 1 56.785 56.285 57.285 0 0 0 0 0.9435 1 31589 31589 0 0 1 + 12178 23894 8373 8544 14015 14015 -0.023088729353275994 FKYHFDFF 8 Unmodified _FKYHFDFF_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7681884765625 2 575.77146 1149.52837 0.37313 0.00021484 -4.3368 -0.002497 -3.9637 -0.0022822 575.768226519812 86.994 0.11178 86.994 86.953 87.065 0 8 5 2 0 0 0 8.7369 1 48200 48200 2.5775 0.27475 1 304580 12179 9910 8374 8545 14016 14016 -0.040416247228677094 FKYIHVYKF 9 Unmodified _FKYIHVYKF_ 0 0 0 REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.844482421875 2 622.844959 1243.67537 0.34137 0.00021262 0.83298 0.00051882 1.1744 0.00073144 622.8459519894549 72.322 0.20926 72.364 72.256 72.465 0.041725 17 9 2 0 0 0 0.20507 1 39831 39831 30.637 18.396 1 3580200 + 12180 28675 8375 8546 14017 14017 0.0632747216207008 FKYIHVYKF 9 Unmodified _FKYIHVYKF_ 0 0 0 REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF REV__ENST00000547673.1_1_12:77242095-77243332:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.56494140625 3 415.565732 1243.67537 -0.012714 -5.2834E-06 -1.4456 -0.00060075 -1.4583 -0.00060603 415.5652552526213 72.32 0.22891 72.362 72.278 72.507 0.041733 17 10 2 0 0 0 0.58499 1 39859 39859 2.2828 0.5405 1 1708600 + 12181 28675 8375 8546 14018 14018 0.0632747216207008 FLAALFMRAM 10 Unmodified _FLAALFMRAM_ 0 0 0 REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF REV__ENST00000396623.7_1_8:67380853-67381021:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8781127929688 3 390.876924 1169.60894 1.4233 0.00055634 -0.87685 -0.00034274 0.54647 0.0002136 390.8765619039926 20.136 0.38825 17.48 17.275 17.663 -2.6564 66 26 3 0 0 0 0.39779 1 10664 10664 13.615 2.7159 1 20638000 + 12182 26512 8376 8547 14019 14019 0.030921970041617897 FLAAQKGA 8 Unmodified _FLAAQKGA_ 0 0 0 nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.2323913574219 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 2.3512 1 2.3512 1.8512 2.8512 0 0 0 0 0.97444 1 1141 1141 0.79363 0 1 12183 2351 8377 8548 14020 14020 0.039341480428561226 FLAAQKGA 8 Unmodified _FLAAQKGA_ 0 0 0 nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.232177734375 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 16.445 1 16.445 15.945 16.945 0 0 0 0 0.97444 1 8018 8018 0.79363 0 1 12184 2351 8377 8548 14021 14021 0.039341480428561226 FLAAQKGA 8 Unmodified _FLAAQKGA_ 0 0 0 nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2327880859375 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 15.088 1 15.074 14.574 15.574 -0.014067 0 0 0 0.97444 1 7386 7386 0.69038 0 1 12185 2351 8377 8548 14022 14022 0.039341480428561226 FLAAQKGA 8 Unmodified _FLAAQKGA_ 0 0 0 nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20221201_MKP_PDAC_01 4 403.2337036132812 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 14.175 1 11.672 11.172 12.172 -2.5029 0 0 0 0.97444 1 7183 7183 0.69038 0 1 12186 2351 8377 8548 14023 14023 0.039341480428561226 FLADAKWIL 9 Unmodified _FLADAKWIL_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8111572265625 2 538.810585 1075.60662 1.8572 0.0010007 -0.83115 -0.00044783 1.026 0.00055284 538.8099194646918 81.805 0.29289 81.865 81.659 81.952 0.059929 23 11 3 0 0 0 0.01958 1 45243 45243 63.961 19.554 1 3591300 12187 16088;13807 8378 8549 14024 14024 0.07183807862361391 FLADDLGGL 9 Unmodified _FLADDLGGL_ 0 0 0 ENST00000466409.1_1_9:95874378-95875386:+|nuORF;ENST00000468781.5_1_9:95858594-95875386:+|nuORF;ENSG00000165233|ENST00000375464|CARD19 ENST00000466409.1_1_9:95874378-95875386:+|nuORF ENST00000466409.1_1_9:95874378-95875386:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.4705200195312 1 920.472374 919.465098 0.22457 0.00020671 -0.1936 -0.0001782 0.030969 2.8506E-05 920.4722324308971 75.425 0.3211 75.425 75.25 75.571 0 19 13 2 0 0 0 0.013472 1 41942 41942 70.716 30.267 1 922120 12188 7312 8379 8550 14025 14025 0.002143897692462815 FLADHGAVDTI 11 Unmodified _FLADHGAVDTI_ 0 0 0 ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-2|BRAT1;ENST00000469750.5_1_7:2583168-2595320:-|nuORF ENSG00000106009|ENST00000340611|BRAT1 ENSG00000106009|ENST00000340611|BRAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7938232421875 2 579.793121 1157.57169 0.73265 0.00042479 0.13951 8.0886E-05 0.87216 0.00050567 579.7931813633537 47.599 0.21344 47.599 47.494 47.707 0 15 9 2 0 0 0 0.56638 1 26082 26082 13.042 0 1 1114700 12189 2390 8380 8551 14026 14026 -0.0007947973624595761 FLADPSAFVAA 11 Unmodified _FLADPSAFVAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7879638671875 2 554.787307 1107.56006 0.099764 5.5348E-05 -0.56015 -0.00031077 -0.46039 -0.00025542 554.7879555956755 76.767 0.3673 76.287 76.111 76.479 -0.47945 41 17 3 0 0 0 0.054439 1 42058 42058 49.933 30.676 1 5488100 12190 1518;14375 8381 8552 14027 14027 0.010583232404542287 FLADPSAFVAA 11 Unmodified _FLADPSAFVAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7876586914062 2 554.787307 1107.56006 0.32727 0.00018157 -1.3545 -0.00075144 -1.0272 -0.00056988 554.7868783353566 76.224 0.31128 76.272 76.133 76.445 0.047943 24 12 3 0 0 0 0.46578 1 42041 42041 18.146 7.3224 1 11398000 12191 1518;14375 8381 8552 14028 14028 0.010583232404542287 FLADPSAFVAA 11 Unmodified _FLADPSAFVAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2897338867188 2 554.787307 1107.56006 0.16449 9.1257E-05 0.86456 0.00047965 1.029 0.0005709 554.787550986948 84.906 0.45483 78.731 78.483 78.938 -6.1757 47 26 2 0 0 0 0.054439 2 55764 55764;55892 49.933 30.676 1 62414000 12192 1518;14375 8381 8552 14029;14030 14029 0.010583232404542287 FLADWQRKI 9 Unmodified _FLADWQRKI_ 0 0 0 ENST00000546361.6_1_19:16629678-16629945:-|nuORF ENST00000546361.6_1_19:16629678-16629945:-|nuORF ENST00000546361.6_1_19:16629678-16629945:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.888671875 3 392.888986 1175.64513 0.11264 4.4256E-05 -0.11428 -4.49E-05 -0.0016396 -6.4418E-07 392.889006938169 26.283 0.17666 26.309 26.183 26.36 0.026953 14 8 2 0 0 0 0.55144 1 13604 13604 2.4985 0.59211 1 2438800 12193 15104 8382 8553 14031 14031 0.0643311349688247 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF ENSG00000204580|ENST00000376568|DDR1 ENSG00000204580|ENST00000376568|DDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.781982421875 2 546.782222 1091.54989 0.46867 0.00025626 -0.12234 -6.6894E-05 0.34633 0.00018937 546.7820247669998 66.586 0.39783 66.586 66.397 66.795 0 55 17 4 0 0 0 0.22237 2 37082 37082;37185 46.021 25.567 1 45981000 12194 10304 8383 8554 14032;14033 14032 0.007777155151643456 FLAEDALNTV 10 Unmodified _FLAEDALNTV_ 0 0 0 ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENST00000484556.1_1_6:30866836-30867070:+|nuORF ENSG00000204580|ENST00000376568|DDR1 ENSG00000204580|ENST00000376568|DDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7835693359375 2 546.782222 1091.54989 0.2474 0.00013528 -0.79651 -0.00043552 -0.54911 -0.00030024 546.781914111103 67.16 0.5237 66.677 66.439 66.963 -0.48218 50 23 3 0 0 0 0.24511 2 36625 36625;36728 43.858 23.405 1 16248000 12195 10304 8383 8554 14034;14035 14034 0.007777155151643456 FLAEHPNVTL 10 Unmodified _FLAEHPNVTL_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000128394|ENST00000308521|APOBEC3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8076171875 2 570.806031 1139.59751 0.64448 0.00036787 -2.5969 -0.0014823 -1.9524 -0.0011144 570.804679053118 53.683 0.31421 53.232 53.087 53.402 -0.45173 48 15 4 0 0 0 0.052718 1 29025 29025 57.249 21.122 1 10778000 12196 4065;10717 8384 8555 14036 14036 0.0332941450603812 FLAESCATL 9 Carbamidomethyl (C) _FLAESC(Carbamidomethyl (C))ATL_ FLAESC(1)ATL FLAESC(51)ATL 0 1 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4 ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 506.2435913085938 2 506.244418 1010.47428 NaN NaN NaN NaN NaN NaN NaN 62.166 1 55.99 55.49 56.49 -6.1757 0 0 0 0.071041 1 40093 40093 50.855 21.773 1 12197 4809 8385 8556 14037 14037 490 -0.030535849367424817 FLAFCGFIM 9 Unmodified _FLAFCGFIM_ 0 0 0 REV__ENSG00000146409|ENST00000275227|SLC18B1 REV__ENSG00000146409|ENST00000275227|SLC18B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1600646972656 3 350.171337 1047.49218 NaN NaN NaN NaN NaN NaN NaN 65.042 1 65.042 64.542 65.542 0 0 0 0 0.84369 1 36284 36284 1.1933 0 1 + 12198 20831 8386 8557 14038 14038 -0.029665412155964077 FLAFSWNVL 9 Unmodified _FLAFSWNVL_ 0 0 0 REV__ENSG00000072858|ENST00000264852|SIDT1 REV__ENSG00000072858|ENST00000264852|SIDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7940063476562 2 548.794935 1095.57532 -0.16253 -8.9197E-05 -1.0572 -0.0005802 -1.2198 -0.0006694 548.7944029705153 55.604 0.19001 55.536 55.456 55.646 -0.068737 14 9 2 0 0 0 0.16226 1 30229 30229 26.884 2.8631 1 5285000 + 12199 17528 8387 8558 14039 14039 0.03135234828278044 FLAFVVCSVDR 11 Unmodified _FLAFVVCSVDR_ 0 0 0 REV__ENSG00000074855|ENST00000159087|ANO8 REV__ENSG00000074855|ENST00000159087|ANO8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8303833007812 2 628.328816 1254.64308 0.96831 0.00060842 0.32927 0.00020689 1.2976 0.00081531 628.3292767443229 96.197 0.15942 90.022 89.944 90.104 -6.1757 16 9 2 0 0 0 0.15156 1 63718 63718 36.506 0.37917 1 9763300 + 12200 17560 8388 8559 14040 14040 0.02594316696763599 FLAKLIAQA 9 Unmodified _FLAKLIAQA_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.8051147460938 2 487.805303 973.596052 0.19248 9.3894E-05 0.18708 9.1258E-05 0.37956 0.00018515 487.805500092038 56.418 0.17068 56.349 56.248 56.419 -0.068737 13 8 2 0 0 0 0.026094 1 30696 30696 57.471 19.32 1 3793000 12201 6443 8389 8560 14041 14041 0.10819825207954636 FLALPFPYL 9 Unmodified _FLALPFPYL_ 0 0 0 REV__ENSG00000166471|ENST00000528080|TMEM41B REV__ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.5777587890625 2 540.810054 1079.60555 -0.60281 -0.00032601 0.1771 9.5777E-05 -0.42571 -0.00023023 540.8100244306827 102.34 0.14354 102.3 102.23 102.37 -0.045853 11 4 4 0 0 0 0.61256 1 56817 56817 0.6015 0 1 25290000 + 12202 22125 8390 8561 14042 14042 0.06893593493464323 FLAPGEIDPL 10 Unmodified _FLAPGEIDPL_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7713012695312 2 536.289682 1070.56481 0.39617 0.00021246 1.8316 0.00098229 2.2278 0.0011947 536.2901051342412 87.204 0.67976 86.7 86.266 86.946 -0.50423 52 27 3 0 0 0 0.22507 1 47525 47525 16.942 4.4107 1 623040 12203 951 8391 8562 14043 14043 0.0323520738318166 FLAPRIHQL 9 Unmodified _FLAPRIHQL_ 0 0 0 ENST00000550078.2_2_1:203798716-203798749:+|nuORF ENST00000550078.2_2_1:203798716-203798749:+|nuORF ENST00000550078.2_2_1:203798716-203798749:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.553955078125 3 365.553826 1093.63965 NaN NaN NaN NaN NaN NaN NaN 45.298 1 45.27 44.77 45.77 -0.028011 0 0 0 0.3092 1 24327 24327 36.127 26.053 1 12204 15162 8392 8563 14044 14044 0.09657434705104606 FLAQRISSI 9 Unmodified _FLAQRISSI_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8048095703125 2 517.803291 1033.59203 1.3527 0.00070043 -0.50771 -0.00026289 0.84498 0.00043753 517.8031115122384 50.021 0.20076 49.972 49.865 50.066 -0.048824 19 9 3 0 0 0 0.044296 1 27041 27041 47.594 5.4998 1 3230100 12205 2677 8393 8564 14045 14045 0.07657735714246883 FLARLDTSF 9 Unmodified _FLARLDTSF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2872314453125 2 535.287474 1068.5604 -1.0096 -0.00054043 0.83441 0.00044665 -0.1752 -9.3784E-05 535.2877207905356 56.343 0.25183 55.858 55.689 55.941 -0.48554 29 12 3 0 0 0 0.25681 1 30562 30562 19.257 3.4098 1 7085100 12206 763 8394 8565 14046 14046 0.028857429602794582 FLASCSDAWIF 11 Unmodified _FLASCSDAWIF_ 0 0 0 ENST00000561210.1_1_15:54556427-54709226:+|nuORF ENST00000561210.1_1_15:54556427-54709226:+|nuORF ENST00000561210.1_1_15:54556427-54709226:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.531982421875 3 420.530358 1258.56925 NaN NaN NaN NaN NaN NaN NaN 46.505 1 46.168 45.668 46.668 -0.33664 0 0 0 0.92234 1 24895 24895 2.8433 0 1 12207 15318 8395 8566 14047 14047 -0.04969651465580682 FLASESLIKQI 11 Unmodified _FLASESLIKQI_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8639526367188 2 624.863546 1247.71254 0.75929 0.00047446 0.18553 0.00011593 0.94483 0.00059039 624.8634826744183 68.581 0.18338 68.606 68.479 68.662 0.025146 18 8 3 0 0 0 0.2736 1 37667 37667 41.956 7.5538 1 2653400 12208 10143 8396 8567 14048 14048 0.09859098917195297 FLASGCWFL 9 Unmodified _FLASGCWFL_ 0 0 0 ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29 ENSG00000203661|ENST00000641363|OR2T5 ENSG00000203661|ENST00000641363|OR2T5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2550659179688 2 522.254588 1042.49462 0.62786 0.0003279 -0.53142 -0.00027754 0.096431 5.0362E-05 522.2543880038171 74.609 0.29074 74.609 74.472 74.763 0 22 12 2 0 0 0 0.49272 1 41595 41595 7.9102 1.5561 1 1563400 12209 9087 8397 8568 14049 14049 -0.02492369486253665 FLASLHMED 9 Unmodified _FLASLHMED_ 0 0 0 ENSG00000182040|ENST00000614341|USH1G ENSG00000182040|ENST00000614341|USH1G ENSG00000182040|ENST00000614341|USH1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8031616210938 2 531.749867 1061.48518 NaN NaN NaN NaN NaN NaN NaN 70.093 1 69.614 69.114 70.114 -0.47903 0 0 0 0.43505 1 38326 38326 18.135 7.3111 1 12210 9011 8398 8569 14050 14050 -0.04310182562448972 FLCEKIRF 8 Unmodified _FLCEKIRF_ 0 0 0 ENST00000370872.7_1_1:75171763-75171883:-|nuORF ENST00000370872.7_1_1:75171763-75171883:-|nuORF ENST00000370872.7_1_1:75171763-75171883:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.52783203125 3 352.5284 1054.56337 NaN NaN NaN NaN NaN NaN NaN 49.872 1 49.824 49.324 50.324 -0.048824 0 0 0 0.97444 1 26961 26961 3.2813 0.78282 1 12211 12347 8399 8570 14051 14051 0.038272948134363105 FLCFSWWF 8 Unmodified _FLCFSWWF_ 0 0 0 ENST00000498041.1_1_2:152276743-152279974:+|nuORF ENST00000498041.1_1_2:152276743-152279974:+|nuORF ENST00000498041.1_1_2:152276743-152279974:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.1749267578125 3 379.173846 1134.49971 NaN NaN NaN NaN NaN NaN NaN 44.992 1 40.14 39.64 40.64 -4.852 0 0 0 0.97444 1 27539 27539 3.9444 0.068064 1 12212 14411 8400 8571 14052 14052 -0.062160656236528666 FLCGVMKTY 9 Carbamidomethyl (C) _FLC(Carbamidomethyl (C))GVMKTY_ FLC(1)GVMKTY FLC(42)GVMKTY 0 1 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000271793|O60506-2|SYNCRIP ENSG00000125944|ENST00000302271|HNRNPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7727661132812 2 559.772288 1117.53002 0.40259 0.00022536 3.2589 0.0018242 3.6615 0.0020496 559.7737451370765 58.16 0.21619 52.133 51.957 52.173 -6.0275 20 11 3 0 0 0 0.062454 1 37218 37218 41.956 9.5019 1 19279000 12213 3910;4687 8401 8572 14053 14053 393 -0.0240407502076323 FLCHLDNLL 9 Unmodified _FLCHLDNLL_ 0 0 0 ENSG00000187736|ENST00000356853|NHEJ1;nc|ENSG00000187736|Q9H9Q4-2|NHEJ1 ENSG00000187736|ENST00000356853|NHEJ1 ENSG00000187736|ENST00000356853|NHEJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2852783203125 2 544.283877 1086.5532 -0.00073359 -3.9928E-07 1.1243 0.00061194 1.1236 0.00061154 544.2846687324077 51.58 0.35523 51.527 51.401 51.756 -0.053871 27 17 2 0 0 0 0.28047 1 27937 27937 18.135 4.6271 1 1572500 12214 9589 8402 8573 14054 14054 0.013386870881959112 FLCPFHLSV 9 Carbamidomethyl (C) _FLC(Carbamidomethyl (C))PFHLSV_ FLC(1)PFHLSV FLC(57)PFHLSV 0 1 0 ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1 ENST00000397415.7_1_6:42848808-42854199:+|nuORF ENST00000397415.7_1_6:42848808-42854199:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2867431640625 2 560.28642 1118.55829 1.3774 0.00077175 -0.32081 -0.00017975 1.0566 0.000592 560.2866121116738 96.261 0.24606 90.085 89.974 90.22 -6.1757 22 14 2 0 0 0 0.026094 1 63764 63764 57.471 19.296 1 35913000 12215 5763 8403 8574 14055 14055 589 0.0037499095078601385 FLCPFHLSVA 10 Carbamidomethyl (C) _FLC(Carbamidomethyl (C))PFHLSVA_ FLC(1)PFHLSVA FLC(64)PFHLSVA 0 1 0 ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1 ENST00000397415.7_1_6:42848808-42854199:+|nuORF ENST00000397415.7_1_6:42848808-42854199:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.806884765625 2 595.804977 1189.5954 -0.090554 -5.3953E-05 2.1607 0.0012874 2.0702 0.0012334 595.806209263046 93.424 0.20152 87.248 87.163 87.364 -6.1757 21 13 2 0 0 0 0.037795 1 61859 61859 64.236 31.931 1 11038000 12216 5763 8404 8575 14056 14056 589 0.008186624965674127 FLCQEETL 8 Unmodified _FLCQEETL_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD REV__ENSG00000198947|ENST00000357033|DMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7320861816406 2 491.731143 981.447733 0.61435 0.00030209 -0.4049 -0.0001991 0.20945 0.00010299 491.73119923021 75.883 0.4091 75.406 75.255 75.664 -0.47714 28 17 2 0 0 0 0.79669 1 41540 41540 8.5933 0 1 903760 + 12217 24105 8405 8576 14057 14057 -0.04373273828082347 FLCWIAYGI 9 Unmodified _FLCWIAYGI_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8192138671875 2 543.278063 1084.54157 0.33873 0.00018402 2.1897 0.0011896 2.5284 0.0013736 543.2789397020654 71.892 0.15802 71.416 71.341 71.499 -0.47609 7 5 2 0 0 0 0.203 1 39303 39303 9.3474 1.4373 1 383040 12218 1166 8406 8577 14058 14058 0.002684900648546318 FLDALIVSM 9 Oxidation (M) _FLDALIVSM(Oxidation (M))_ FLDALIVSM(1) FLDALIVSM(42) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7734985351562 2 512.772811 1023.53107 -0.23628 -0.00012116 0.21201 0.00010871 -0.024269 -1.2444E-05 512.7730971551414 78.513 0.4127 78.027 77.911 78.323 -0.48595 27 17 2 0 0 0 0.06187 1 43091 43091 42.095 11.87 1 1353500 12219 1266 8407 8578 14059 14059 211 0.02024462619795031 FLDALIVSM 9 Oxidation (M) _FLDALIVSM(Oxidation (M))_ FLDALIVSM(1) FLDALIVSM(55) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7723999023438 2 512.772811 1023.53107 0.56141 0.00028788 -0.49641 -0.00025455 0.065 3.333E-05 512.7725494916216 78.178 0.5881 78.23 78.037 78.625 0.052452 34 24 2 0 0 0 0.031062 1 43169 43169 54.774 16.622 1 2469400 12220 1266 8407 8578 14060 14060 211 0.02024462619795031 FLDARRRPL 9 Unmodified _FLDARRRPL_ 0 0 0 REV__nc|ENSG00000183864|Q14106-2|TOB2 REV__nc|ENSG00000183864|Q14106-2|TOB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.23046875 3 381.896363 1142.66726 0.20041 7.6536E-05 -0.033697 -1.2869E-05 0.16671 6.3667E-05 381.89643721250485 27.823 0.15471 27.852 27.775 27.929 0.029564 13 6 3 0 0 0 0.23158 1 14465 14465 19.362 0 1 3868500 + 12221 23383 8408 8579 14061 14061 0.10163337965332175 FLDATLTSV 9 Unmodified _FLDATLTSV_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7606201171875 2 483.760758 965.506963 0.28707 0.00013887 -0.32469 -0.00015707 -0.03762 -1.8199E-05 483.7607463071137 69.011 0.20848 68.53 68.443 68.652 -0.48071 14 8 2 0 0 0 0.12841 1 37725 37725 30.225 14.457 1 695790 12222 458 8409 8580 14062 14062 0.022829454577731667 FLDDVVHSL 9 Unmodified _FLDDVVHSL_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7716674804688 2 522.771657 1043.52876 0.59636 0.00031176 -0.53938 -0.00028197 0.056982 2.9789E-05 522.7715324170409 67.816 0.1993 67.816 67.697 67.896 0 13 8 2 0 0 0 0.06187 1 37809 37809 42.095 23.96 1 806060 12223 8170 8410 8581 14063 14063 0.008737502063468128 FLDEDMSVDCF 11 Unmodified _FLDEDMSVDCF_ 0 0 0 REV__ENSG00000177602|ENST00000325418|HASPIN REV__ENSG00000177602|ENST00000325418|HASPIN MSMS AL20221201_MKP_PDAC_01 4 660.7588500976562 2 660.759772 1319.50499 NaN NaN NaN NaN NaN NaN NaN 54.969 1 49.104 48.604 49.604 -5.8653 0 0 0 0.67092 1 34933 34933 18.146 5.9057 1 + 12224 22995 8411 8582 14064 14064 -0.14198219404647716 FLDEDQLR 8 Unmodified _FLDEDQLR_ 0 0 0 nc|ENSG00000186073|Q9Y2V0-2|CDIN1;ENSG00000186073|ENST00000566621|CDIN1;ENST00000570265.5_1_15:36871929-37039277:+|nuORF nc|ENSG00000186073|Q9Y2V0-2|CDIN1 nc|ENSG00000186073|Q9Y2V0-2|CDIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2598876953125 2 518.258914 1034.50327 0.88633 0.00045935 -1.5809 -0.00081932 -0.69457 -0.00035997 518.7572235980673 68.55 0.41075 62.374 62.223 62.633 -6.1757 37 23 2 0 0 0 0.72664 1 44701 44701 14.838 0.25658 1 13994000 12225 9447 8412 8583 14065 14065 -0.012597243161053484 FLDEKTHEL 9 Unmodified _FLDEKTHEL_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.861328125 3 377.860873 1130.56079 -0.81869 -0.00030935 0.61413 0.00023206 -0.20456 -7.7294E-05 378.1953393248674 32.973 0.23689 32.973 32.851 33.088 0 28 11 3 0 0 0 0.24903 1 17234 17234 19.626 9.4754 1 5203500 12226 4130 8413 8584 14066 14066 0.0007311788947390596 FLDEKTHEL 9 Unmodified _FLDEKTHEL_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8612670898438 3 377.860873 1130.56079 1.691 0.00063896 -1.1359 -0.00042922 0.55506 0.00020974 377.8609152684908 37.707 0.43977 33.339 33.091 33.531 -4.3689 40 26 2 0 0 0 0.067618 2 22115 22115;22233 40.725 21.363 1 9545900 12227 4130 8413 8584 14067;14068 14067 0.0007311788947390596 FLDEKTHEL 9 Unmodified _FLDEKTHEL_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.287353515625 2 566.287671 1130.56079 1.3313 0.00075392 1.383 0.00078315 2.7143 0.0015371 566.287953809988 37.748 0.12119 33.379 33.334 33.456 -4.3689 8 6 2 0 0 0 0.058763 1 22201 22201 38.615 14.594 1 4617400 12228 4130 8413 8584 14069 14069 0.0007311788947390596 FLDEPTNHL 9 Unmodified _FLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2;ENST00000465687.1_1_3:88367908-88368169:+|nuORF nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2665405273438 2 543.266739 1084.51892 NaN NaN NaN NaN NaN NaN NaN 44.627 1 44.627 44.127 45.127 0 0 0 0 0.022863 1 24289 24289 74.929 28.908 1 12229 597 8414 8585 14070 14070 -0.019954377990416106 FLDESRSTQYM 11 Oxidation (M) _FLDESRSTQYM(Oxidation (M))_ FLDESRSTQYM(1) FLDESRSTQYM(46) 0 0 1 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 696.8084106445312 2 696.808642 1391.60273 0.034313 2.391E-05 0.46528 0.00032421 0.49959 0.00034812 696.8089778274189 31.337 0.24448 31.337 31.174 31.418 0 31 11 3 0 0 0 0.072475 1 16298 16298 46.022 23.364 1 1928700 12230 9127 8415 8586 14071 14071 1522 -0.07740694484300548 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2644348144531 2 511.263665 1020.51278 0.50138 0.00025634 0.029886 1.528E-05 0.53126 0.00027162 511.263576213365 74.593 0.4794 74.593 74.41 74.89 0 60 21 4 0 0 0 0.070838 1 41450 41450 39.957 3.9131 1 13047000 12231 10454 8416 8587 14072 14072 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2636108398438 2 511.263665 1020.51278 0.55579 0.00028415 -0.67834 -0.00034681 -0.12255 -6.2656E-05 511.2631947975676 75.096 0.45953 74.619 74.405 74.864 -0.47714 51 20 3 0 0 0 0.05447 2 41142 41038;41142 43.858 3.901 1 16054000 12232 10454 8416 8587 14073;14074 14074 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2638549804688 2 511.263665 1020.51278 0.56529 0.00028901 -1.6617 -0.00084956 -1.0964 -0.00056055 511.2626416211036 74.56 0.2511 74.606 74.522 74.773 0.045959 18 10 2 0 0 0 0.2143 1 41118 41118 21.747 0 1 2826300 12233 10454 8416 8587 14075 14075 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1021.519775390625 1 1021.52005 1020.51278 0.80024 0.00081746 -0.98894 -0.0010102 -0.1887 -0.00019276 1021.5189675032373 83.433 0.58382 77.257 76.964 77.548 -6.1757 69 30 3 0 0 0 0.0094097 1 54747 54747 82.529 3.8013 1 53217000 12234 10454 8416 8587 14076 14076 0.003340439694284214 FLDGNELTL 9 Unmodified _FLDGNELTL_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2635803222656 2 511.263665 1020.51278 0.83574 0.00042728 -0.32299 -0.00016513 0.51275 0.00026215 511.2635100008371 83.467 0.87312 77.291 76.964 77.837 -6.1757 112 45 4 0 0 0 0.031062 2 55012 54882;55012 54.774 12.679 1 158610000 12235 10454 8416 8587 14077;14078 14078 0.003340439694284214 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7844848632812 2 507.784567 1013.55458 -0.015119 -7.6772E-06 -0.024228 -1.2303E-05 -0.039347 -1.998E-05 507.7845886220757 68.742 0.30317 68.261 68.096 68.399 -0.48071 20 13 2 0 0 0 0.16226 1 37562 37562 26.884 10.735 1 1551500 12236 3537 8417 8588 14079 14079 0.048346444486242035 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7842712402344 2 507.784567 1013.55458 0.66057 0.00033543 0.16162 8.2069E-05 0.82219 0.00041749 507.7847126609789 68.261 0.3094 68.286 68.127 68.436 0.025154 26 15 2 0 0 0 0.0090851 1 37488 37488 85.357 33.727 1 7770700 12237 3537 8417 8588 14080 14080 0.048346444486242035 FLDHIIASV 9 Unmodified _FLDHIIASV_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MSMS AL20221201_MKP_PDAC_01 4 507.7848815917969 2 507.784567 1013.55458 NaN NaN NaN NaN NaN NaN NaN 86.964 1 80.788 80.288 81.288 -6.1757 0 0 0 0.29524 1 57330 57330 25.399 4.9457 1 12238 3537 8417 8588 14081 14081 0.048346444486242035 FLDITNPKA 9 Unmodified _FLDITNPKA_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF;ENST00000459854.5_1_22:19442175-19463025:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7804260253906 2 509.782025 1017.5495 NaN NaN NaN NaN NaN NaN NaN 48.083 1 47.73 47.23 48.23 -0.3526 0 0 0 0.15231 1 25795 25795 36.506 13.358 1 12239 1014 8418 8589 14082 14082 0.04142340585997317 FLDKNDHSL 9 Unmodified _FLDKNDHSL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.517822265625 3 363.517218 1087.52982 1.5878 0.0005772 -0.010823 -3.9343E-06 1.577 0.00057326 363.5171867034812 32.466 0.31834 28.61 28.477 28.796 -3.8562 25 16 2 0 0 0 0.011968 1 18532 18532 67.838 47.257 1 7791100 12240 3672 8419 8590 14083 14083 -0.0104403542475211 FLDKNDHSL 9 Unmodified _FLDKNDHSL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.517218 1087.52982 -0.66643 -0.00024226 0.09541 3.4683E-05 -0.57102 -0.00020758 363.51739937674853 28.528 0.15375 28.528 28.467 28.621 0 -0.040983 5.9598E-05 NaN 67.838 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1048000 12241 3672 8419 8590 -0.0104403542475211 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2747802734375 2 571.274229 1140.53391 0.35623 0.0002035 0.88976 0.0005083 1.246 0.0007118 571.274663197839 78.5 0.40628 78.5 78.291 78.698 0 61 19 4 0 0 0 0.019303 1 43649 43649 64.236 22.142 1 5931900 12242 1759 8420 8591 14084 14084 -0.030739907217139262 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2753295898438 2 571.274229 1140.53391 0.54866 0.00031343 0.040023 2.2864E-05 0.58868 0.0003363 571.2742540786228 79.036 0.45007 78.55 78.349 78.799 -0.48595 49 19 4 0 0 0 0.038285 2 43243 43243;43338 50.855 22.368 1 7452600 12243 1759 8420 8591 14085;14086 14085 -0.030739907217139262 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.275146484375 2 571.274229 1140.53391 1.1345 0.00064812 -0.53508 -0.00030568 0.59943 0.00034244 571.2737126038631 87.252 0.53796 81.076 80.788 81.326 -6.1757 65 29 3 0 0 0 0.06187 3 57551 57421;57551;57682 42.095 14.298 1 45870000 12244 1759 8420 8591 14087;14088;14089 14088 -0.030739907217139262 FLDLTEQEF 9 Unmodified _FLDLTEQEF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.274229 1140.53391 0.35519 0.00020291 -1.1484 -0.00065605 -0.79321 -0.00045314 571.2747605601445 78.499 0.23521 78.551 78.442 78.677 0.052452 0.017686 -0.0018437 NaN 64.236 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1072800 12245 1759 8420 8591 -0.030739907217139262 FLDLTTFFYHY 11 Unmodified _FLDLTTFFYHY_ 0 0 0 REV__ENST00000472429.1_1_21:30971125-31311818:-|nuORF REV__ENST00000472429.1_1_21:30971125-31311818:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.5718688964844 3 489.571211 1465.6918 NaN NaN NaN NaN NaN NaN NaN 15.897 1 15.903 15.403 16.403 0.0050564 0 0 0 0.94307 1 7944 7944 0.08335 0 1 + 12246 22539 8421 8592 14090 14090 -0.022414914624732774 FLDLVVKGY 9 Unmodified _FLDLVVKGY_ 0 0 0 REV__ENST00000302764.8_1_5:162880677-162880902:-|nuORF REV__ENST00000302764.8_1_5:162880677-162880902:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3018188476562 2 527.302593 1052.59063 NaN NaN NaN NaN NaN NaN NaN 75.058 1 74.58 74.08 75.08 -0.47714 0 0 0 0.50124 1 41082 41082 15.847 3.3156 1 + 12247 25341 8422 8593 14091 14091 0.06644101625465737 FLDMFLFFA 9 Unmodified _FLDMFLFFA_ 0 0 0 REV__ENST00000380874.3_1_6:1612762-1612825:+|nuORF REV__ENST00000380874.3_1_6:1612762-1612825:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.193603515625 3 384.192906 1149.55689 NaN NaN NaN NaN NaN NaN NaN 4.3322 1 4.3322 3.8322 4.8322 0 0 0 0 0.85737 1 2087 2087 0.26902 0.033176 1 + 12248 26321 8423 8594 14092 14092 -0.011906431379202331 FLDNACHQL 9 Carbamidomethyl (C) _FLDNAC(Carbamidomethyl (C))HQL_ FLDNAC(1)HQL FLDNAC(61)HQL 0 1 0 ENSG00000160447|ENST00000291906|PKN3;ENST00000483521.1_1_9:131475404-131482989:+|nuORF ENSG00000160447|ENST00000291906|PKN3 ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2600708007812 2 559.258391 1116.50223 0.33181 0.00018557 3.1941 0.0017863 3.5259 0.0019719 559.2609471163549 40.019 0.19903 40.019 39.932 40.131 0 13 9 2 0 0 0 0.022193 1 21493 21493 61.357 31.517 1 5224900 12249 6729 8424 8595 14093 14093 660 -0.051362619566589274 FLDNACHQL 9 Carbamidomethyl (C) _FLDNAC(Carbamidomethyl (C))HQL_ FLDNAC(1)HQL FLDNAC(65)HQL 0 1 0 ENSG00000160447|ENST00000291906|PKN3;ENST00000483521.1_1_9:131475404-131482989:+|nuORF ENSG00000160447|ENST00000291906|PKN3 ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2599487304688 2 559.258391 1116.50223 0.67484 0.00037741 0.58354 0.00032635 1.2584 0.00070376 559.259178014782 40.375 0.25338 40.078 39.923 40.177 -0.29716 25 11 3 0 0 0 0.018301 1 21312 21312 65.235 40.561 1 4161100 12250 6729 8424 8595 14094 14094 660 -0.051362619566589274 FLDNACHQL 9 Carbamidomethyl (C) _FLDNAC(Carbamidomethyl (C))HQL_ FLDNAC(1)HQL FLDNAC(89)HQL 0 1 0 ENSG00000160447|ENST00000291906|PKN3;ENST00000483521.1_1_9:131475404-131482989:+|nuORF ENSG00000160447|ENST00000291906|PKN3 ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2588500976562 2 559.258391 1116.50223 0.74481 0.00041654 0.78691 0.00044008 1.5317 0.00085663 559.2586535354003 46.109 0.41911 41.154 40.936 41.355 -4.9549 74 27 4 0 0 0 0.008678 1 28408 28408 88.904 58.679 1 50285000 12251 6729 8424 8595 14095 14095 660 -0.051362619566589274 FLDNLHINL 9 Unmodified _FLDNLHINL_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8013305664062 2 549.800749 1097.58694 0.15699 8.6314E-05 1.1443 0.00062912 1.3013 0.00071544 549.8013902910463 79.845 0.25716 79.903 79.746 80.004 0.057587 16 9 2 0 0 0 0.040733 1 44128 44128 62.573 24.599 1 3023900 12252 2056 8425 8596 14096 14096 0.04205431851596586 FLDNLHINL 9 Unmodified _FLDNLHINL_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8010864257812 2 549.800749 1097.58694 1.1264 0.00061929 -0.5115 -0.00028123 0.61489 0.00033807 549.8005239582659 96.119 0.30815 89.943 89.748 90.056 -6.1757 32 18 2 0 0 0 0.0087399 1 63654 63654 106.94 50.763 1 10843000 12253 2056 8425 8596 14097 14097 0.04205431851596586 FLDPATPRV 9 Unmodified _FLDPATPRV_ 0 0 0 ENST00000407501.6_1_18:3449895-3450350:+|nuORF;ENST00000343820.9_1_18:3449712-3450399:+|nuORF ENST00000407501.6_1_18:3449895-3450350:+|nuORF ENST00000407501.6_1_18:3449895-3450350:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.2807006835938 2 508.282192 1014.54983 NaN NaN NaN NaN NaN NaN NaN 53.567 1 47.763 47.263 48.263 -5.8042 0 0 0 0.10661 1 33872 33872 41.956 14.327 1 12254 12006 8426 8597 14098 14098 0.04313760305853975 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2017517089844 3 387.201341 1158.58219 -0.16189 -6.2682E-05 0.21077 8.1609E-05 0.04888 1.8926E-05 387.2012082913731 52.338 0.24944 52.338 52.152 52.402 0 25 10 3 0 0 0 0.54213 1 28933 28933 4.897 4.897 1 2605600 12255 8934 8427 8598 14099 14099 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5361633300781 3 387.201341 1158.58219 0.40758 0.00015781 -0.092593 -3.5852E-05 0.31499 0.00012196 387.2012967249407 52.8 0.58143 52.348 52.121 52.703 -0.45173 86 29 5 0 0 0 0.20507 2 28456 28456;28555 22.658 12.508 1 86826000 12256 8934 8427 8598 14100;14101 14100 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.29833984375 2 580.298373 1158.58219 0.41015 0.00023801 -0.16657 -9.6658E-05 0.24359 0.00014135 580.2985383953115 52.779 0.18063 52.327 52.219 52.4 -0.45173 21 8 3 0 0 0 0.0088231 1 28514 28514 92.653 33.975 1 7232000 12257 8934 8427 8598 14102 14102 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2008056640625 3 387.201341 1158.58219 0.69694 0.00026985 -0.26203 -0.00010146 0.4349 0.0001684 387.20121297492534 52.463 0.53928 52.404 52.148 52.687 -0.058918 63 26 4 0 0 0 0.024189 2 28376 28376;28478 59.368 36.71 1 24491000 12258 8934 8427 8598 14103;14104 14103 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2982788085938 2 580.298373 1158.58219 1.166 0.00067664 -2.2672 -0.0013157 -1.1012 -0.00063903 580.2966882330584 52.458 0.15878 52.399 52.267 52.426 -0.058918 11 7 2 0 0 0 0.016448 1 28417 28417 63.961 29.559 1 2803600 12259 8934 8427 8598 14105 14105 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2023620605469 3 387.201341 1158.58219 1.8359 0.00071086 -0.29457 -0.00011406 1.5413 0.00059681 387.2012196257127 58.743 0.43051 52.668 52.475 52.905 -6.0745 62 23 3 0 0 0 0.14594 2 37564 37564;37692 28.495 5.7582 1 53950000 12260 8934 8427 8598 14106;14107 14106 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2015686035156 3 387.201341 1158.58219 1.1525 0.00044624 -0.69299 -0.00026833 0.45947 0.00017791 387.20115393567085 75.896 1.9015 69.72 68.64 70.541 -6.1757 144 103 2 0 0 0 0.062454 6 49866 49496;49624;49745;49866;50001;50126 41.956 19.297 1 16268000 12261 8934 8427 8598 14108;14109;14110;14111;14112;14113 14111 0.009245477088597909 FLDPDRHFL 9 Unmodified _FLDPDRHFL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MSMS AL20221201_MKP_PDAC_01 4 387.2016296386719 3 387.201341 1158.58219 NaN NaN NaN NaN NaN NaN NaN 76.837 1 70.662 70.162 71.162 -6.1757 0 0 0 0.45218 1 50256 50256 17.443 7.8987 1 12262 8934 8427 8598 14114 14114 0.009245477088597909 FLDPNNIPKA 10 Unmodified _FLDPNNIPKA_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8062744140625 2 564.806031 1127.59751 0.67535 0.00038144 0.21216 0.00011983 0.88751 0.00050127 564.806045197737 48.174 0.3121 47.822 47.672 47.984 -0.3526 35 15 3 0 0 0 0.043225 1 25868 25868 61.602 37.581 1 13483000 12263 6622 8428 8599 14115 14115 0.038814145060541705 FLDPNNIPKA 10 Unmodified _FLDPNNIPKA_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENST00000532552.2_1_11:77817934-77820625:-|nuORF ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8074951171875 2 564.806031 1127.59751 0.803 0.00045354 0.34877 0.00019699 1.1518 0.00065053 564.8061906433409 47.854 0.32731 47.816 47.661 47.988 -0.038643 35 15 3 0 0 0 0.043225 2 25757 25757;25869 61.602 33.973 1 11279000 12264 6622 8428 8599 14116;14117 14116 0.038814145060541705 FLDQKCQNI 9 Carbamidomethyl (C) _FLDQKC(Carbamidomethyl (C))QNI_ FLDQKC(1)QNI FLDQKC(130)QNI 0 1 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2872924804688 2 583.287148 1164.55974 0.72129 0.00042072 -0.4779 -0.00027875 0.24339 0.00014197 583.2868669185586 39.538 0.3956 35.087 34.929 35.325 -4.4509 55 24 3 0 0 0 0.0032147 1 23415 23415 125.53 46.801 1 28427000 12265 5260 8429 8600 14118 14118 541 -0.01595419751083682 FLDSTSPLL 9 Unmodified _FLDSTSPLL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.76953125 2 496.768583 991.522613 0.1816 9.0211E-05 0.26812 0.00013319 0.44971 0.0002234 496.7685418549763 84.834 0.44754 78.659 78.429 78.877 -6.1757 31 25 2 0 0 0 0.010877 1 55810 55810 77.984 27.129 1 8815800 12266 4858 8430 8601 14119 14119 0.026512319748235313 FLDTRHNY 8 Unmodified _FLDTRHNY_ 0 0 0 REV__ENSG00000158859|ENST00000367996|ADAMTS4 REV__ENSG00000158859|ENST00000367996|ADAMTS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7606811523438 2 533.259248 1064.50394 0.21843 0.00011648 -2.9165 -0.0015552 -2.698 -0.0014388 533.7587705465813 62.225 0.54354 62.225 61.821 62.365 0 59 26 3 0 0 0 0.74163 1 34530 34530 13.508 0.97634 1 7905900 + 12267 21447 8431 8602 14120 14120 -0.025728848763719725 FLDYDQGLLIF 11 Unmodified _FLDYDQGLLIF_ 0 0 0 nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.3487548828125 2 672.347729 1342.6809 1.0828 0.00072801 0.70969 0.00047716 1.7925 0.0012052 672.3476600846667 101.08 0.12521 94.906 94.831 94.956 -6.1757 16 6 4 0 0 0 0.39949 1 67757 67757 21.537 6.2885 1 27404000 12268 3226 8432 8603 14121 14121 0.02327106163238568 FLDYGAVNLF 10 Unmodified _FLDYGAVNLF_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7950439453125 2 579.795132 1157.57571 0.6409 0.00037159 -0.43742 -0.00025362 0.20347 0.00011797 579.7950061569123 46.798 0.19698 46.461 46.347 46.544 -0.33664 15 9 2 0 0 0 0.66569 1 25078 25078 6.7232 0 1 2085300 12269 4975 8433 8604 14122 14122 0.003226097574497544 FLEGQIAIL 9 Unmodified _FLEGQIAIL_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2946472167969 2 502.294768 1002.57498 0.68591 0.00034453 -0.44728 -0.00022467 0.23863 0.00011986 502.29452769497965 60.881 0.351 60.881 60.718 61.069 0 38 14 3 0 0 0 0.25681 1 34028 34028 19.257 0 1 6313600 12270 9064 8434 8605 14123 14123 0.07379815108413368 FLEGYVQQF 9 Unmodified _FLEGYVQQF_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.780029296875 2 565.779482 1129.54441 NaN NaN NaN NaN NaN NaN NaN 76.764 1 76.284 75.784 76.784 -0.47945 0 0 0 0.76439 1 42029 42029 7.2892 0.56607 1 12271 8142 8435 8606 14124 14124 -0.015179632766148643 FLEKFSEH 8 Unmodified _FLEKFSEH_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7587280273438 2 518.758549 1035.50255 -0.10932 -5.6711E-05 -0.21804 -0.00011311 -0.32736 -0.00016982 518.7583676097568 39.342 0.30557 39.055 38.925 39.23 -0.28687 35 14 3 0 0 0 0.63229 1 20729 20729 23.148 9.6405 1 17030000 12272 2957 8436 8607 14125 14125 -0.013785189651343899 FLEKLLPPV 9 Unmodified _FLEKLLPPV_ 0 0 0 ENSG00000011009|ENST00000374514|LYPLA2;ENST00000472213.1_1_1:24120901-24121219:+|nuORF ENSG00000011009|ENST00000374514|LYPLA2 ENSG00000011009|ENST00000374514|LYPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3282470703125 2 528.328611 1054.64267 0.18291 9.6639E-05 -2.3119 -0.0012214 -2.129 -0.0011248 528.3282351122009 77.712 0.64328 77.765 77.513 78.156 0.052452 77 26 4 0 0 0 0.023481 3 42915 42808;42915;43026 60.074 25.971 1 33856000 12273 431 8437 8608 14126;14127;14128 14127 0.11753265039214966 FLEKLLPPV 9 Unmodified _FLEKLLPPV_ 0 0 0 ENSG00000011009|ENST00000374514|LYPLA2;ENST00000472213.1_1_1:24120901-24121219:+|nuORF ENSG00000011009|ENST00000374514|LYPLA2 ENSG00000011009|ENST00000374514|LYPLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3294677734375 2 528.328611 1054.64267 1.3604 0.00071873 -0.21203 -0.00011202 1.1484 0.00060671 528.3285403201694 96.683 0.3359 90.508 90.32 90.656 -6.1757 36 19 2 0 0 0 0.01958 2 63984 63984;64101 63.961 15.615 1 181360000 12274 431 8437 8608 14129;14130 14129 0.11753265039214966 FLEKSFCFF 9 Unmodified _FLEKSFCFF_ 0 0 0 REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8568420410156 3 389.856294 1166.54705 1.1582 0.00045154 0.84106 0.00032789 1.9993 0.00077944 390.1911325151498 22.128 0.34682 19.393 19.175 19.522 -2.7348 40 19 3 0 0 0 0.54444 1 11935 11935 2.7352 0 1 1887800 + 12275 26615 8438 8609 14131 14131 -0.029558311433220297 FLEPDSEDYF 10 Unmodified _FLEPDSEDYF_ 0 0 0 REV__ENST00000472324.5_1_X:152935914-152936728:-|nuORF REV__ENST00000472324.5_1_X:152935914-152936728:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 631.267822265625 2 631.266601 1260.51865 NaN NaN NaN NaN NaN NaN NaN 100.2 1 94.022 93.522 94.522 -6.1757 0 0 0 0.8634 1 66941 66941 10.824 2.9138 1 + 12276 19747 8439 8610 14132 14132 -0.10118902309568512 FLEPMTHEVLS 11 Unmodified _FLEPMTHEVLS_ 0 0 0 ENST00000464546.5_3_3:112929978-112968600:+|nuORF;ENST00000462425.1_1_3:112931159-112968640:+|nuORF;ENST00000485230.5_2_3:112930474-112968600:+|nuORF;ENST00000495514.5_2_3:112930393-112968640:+|nuORF ENST00000464546.5_3_3:112929978-112968600:+|nuORF ENST00000464546.5_3_3:112929978-112968600:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827819824219 3 434.884801 1301.63257 NaN NaN NaN NaN NaN NaN NaN 26.888 1 26.888 26.388 27.388 0 0 0 0 0.93694 1 13837 13837 4.7159 0 1 12277 13677 8440 8611 14133 14133 -0.006177107482926658 FLESGPLA 8 Unmodified _FLESGPLA_ 0 0 0 nc|ENSG00000099326|P28698-3|MZF1;ENSG00000099326|ENST00000215057|MZF1 nc|ENSG00000099326|P28698-3|MZF1 nc|ENSG00000099326|P28698-3|MZF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.2225952148438 2 417.223811 832.433069 NaN NaN NaN NaN NaN NaN NaN 19.152 1 19.152 18.652 19.652 0 0 0 0 0.97444 1 9562 9562 2.5775 0 1 12278 1693 8441 8612 14134 14134 0.010150220860850823 FLETNVPLL 9 Unmodified _FLETNVPLL_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000515849.2_1_5:114726864-114727050:-|nuORF;ENST00000517534.5_1_5:138163374-138223382:+|nuORF;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2998046875 2 523.30005 1044.58555 NaN NaN NaN NaN NaN NaN NaN 88.285 1 87.781 87.281 88.281 -0.50423 0 0 0 0.36554 1 48286 48286 21.747 3.6117 1 12279 671;924 8442 8613 14135 14135 0.06503797762843533 FLEYSETYF 9 Unmodified _FLEYSETYF_ 0 0 0 ENST00000468295.1_1_11:28349625-28349682:+|nuORF ENST00000468295.1_1_11:28349625-28349682:+|nuORF ENST00000468295.1_1_11:28349625-28349682:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7692260742188 2 599.76878 1197.52301 NaN NaN NaN NaN NaN NaN NaN 80.676 1 80.733 80.233 81.233 0.057587 0 0 0 0.82015 1 44603 44603 5.2307 0 1 12280 13803 8443 8614 14136 14136 -0.06785393095992731 FLEYYQEHLAY 11 Unmodified _FLEYYQEHLAY_ 0 0 0 nc|ENSG00000008735|Q13387-3|MAPK8IP2;nc|ENSG00000008735|Q13387-4|MAPK8IP2;nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 738.3455200195312 2 738.345717 1474.67688 0.08651 6.3874E-05 -0.45762 -0.00033788 -0.37111 -0.00027401 738.3458281133968 39.33 0.31496 39.33 39.154 39.469 0 52 14 5 0 0 0 0.68427 1 21038 21038 5.7319 1.203 1 8701900 12281 16015 8444 8615 14137 14137 -0.04146983330451803 FLEYYQEHLAY 11 Unmodified _FLEYYQEHLAY_ 0 0 0 nc|ENSG00000008735|Q13387-3|MAPK8IP2;nc|ENSG00000008735|Q13387-4|MAPK8IP2;nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 738.3460693359375 2 738.345717 1474.67688 NaN NaN NaN NaN NaN NaN NaN 39.472 1 39.472 38.972 39.972 0 0 0 0 0.93224 1 21156 21156 5.7319 0.83484 1 12282 16015 8444 8615 14138 14138 -0.04146983330451803 FLEYYQEHLAY 11 Unmodified _FLEYYQEHLAY_ 0 0 0 nc|ENSG00000008735|Q13387-3|MAPK8IP2;nc|ENSG00000008735|Q13387-4|MAPK8IP2;nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 738.3450927734375 2 738.345717 1474.67688 0.26642 0.00019671 -0.43274 -0.00031951 -0.16632 -0.0001228 738.3454690633702 45.22 0.30752 40.265 40.13 40.437 -4.9549 35 20 2 0 0 0 0.58219 1 27716 27716 12.241 3.4953 1 13506000 12283 16015 8444 8615 14139 14139 -0.04146983330451803 FLEYYQEHLAY 11 Unmodified _FLEYYQEHLAY_ 0 0 0 nc|ENSG00000008735|Q13387-3|MAPK8IP2;nc|ENSG00000008735|Q13387-4|MAPK8IP2;nc|ENSG00000008735|Q13387-2|MAPK8IP2;ENSG00000008735|ENST00000329492|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 738.345717 1474.67688 0.08651 6.3874E-05 -0.45762 -0.00033788 -0.37111 -0.00027401 738.3458281133968 39.33 0.31496 39.33 39.154 39.469 0 0 0 NaN 5.7319 52 14 5 NaN NaN NaN NaN 0 NaN NaN 0 8701900 12284 16015 8444 8615 -0.04146983330451803 FLFCFWVF 8 Unmodified _FLFCFWVF_ 0 0 0 REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF REV__ENST00000542104.5_2_12:65089076-65089520:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7694702148438 2 554.769874 1107.5252 NaN NaN NaN NaN NaN NaN NaN 61.67 1 61.182 60.682 61.682 -0.48764 0 0 0 0.94749 1 33591 33591 11.114 3.8252 1 + 12285 28608 8445 8616 14140 14140 -0.024265911012207653 FLFDEEMEQM 10 2 Oxidation (M) _FLFDEEM(Oxidation (M))EQM(Oxidation (M))_ FLFDEEM(1)EQM(1) FLFDEEM(72)EQM(72) 0 0 2 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.7669067382812 2 675.765054 1349.51555 -0.021377 -1.4446E-05 0.10383 7.0165E-05 0.082453 5.5719E-05 675.7654310122457 58.671 0.43501 58.671 58.467 58.902 0 70 18 5 0 0 0 0.024115 2 32614 32614;32723 71.922 52.665 1 13642000 12286 6391;16287 8446 8617 14141;14142 14141 1122;1123 -0.14522236750235606 FLFDEEMEQM 10 Unmodified _FLFDEEMEQM_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MSMS AL20221201_MKP_PDAC_01 4 659.7703857421875 2 659.770139 1317.52573 NaN NaN NaN NaN NaN NaN NaN 93.226 1 87.05 86.55 87.55 -6.1757 0 0 0 0.38297 1 61694 61694 32.305 25.582 1 12287 6391;16287 8446 8618 14143 14143 -0.12033629025017945 FLFDEEMEQM 10 Unmodified _FLFDEEMEQM_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MSMS AL20221201_MKP_PDAC_01 4 659.769775390625 2 659.770139 1317.52573 NaN NaN NaN NaN NaN NaN NaN 93.425 1 87.249 86.749 87.749 -6.1757 0 0 0 0.13561 1 61835 61835 48.346 38.963 1 12288 6391;16287 8446 8618 14144 14144 -0.12033629025017945 FLFDHLLTL 9 Unmodified _FLFDHLLTL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8179321289062 2 559.815867 1117.61718 2.9998 0.0016794 0.035376 1.9804E-05 3.0352 0.0016992 559.8164399390647 99.906 0.16357 99.869 99.771 99.934 -0.036301 21 5 6 0 0 0 0.013323 1 55494 55494 71.134 7.5707 1 22781000 12289 5983 8447 8619 14145 14145 0.06307790516802925 FLFEGFSSF 9 Unmodified _FLFEGFSSF_ 0 0 0 nc|ENSG00000196266|Q5JRS4|OR10J3 nc|ENSG00000196266|Q5JRS4|OR10J3 nc|ENSG00000196266|Q5JRS4|OR10J3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.288818359375 2 540.755475 1079.4964 0.48438 0.00026193 -2.8775 -0.001556 -2.3931 -0.0012941 540.7545006978854 72.833 0.21795 72.358 72.189 72.407 -0.47588 14 9 2 0 0 0 0.19298 1 39859 39859 13.508 1.8676 1 316640 12290 16478 8448 8620 14146 14146 -0.04017037196649653 FLFEITSF 8 Unmodified _FLFEITSF_ 0 0 0 ENST00000565424.2_1_16:47581649-47581931:+|nuORF ENST00000565424.2_1_16:47581649-47581931:+|nuORF ENST00000565424.2_1_16:47581649-47581931:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2588195800781 2 502.260394 1002.50623 NaN NaN NaN NaN NaN NaN NaN 74.953 1 74.476 73.976 74.976 -0.47714 0 0 0 0.95607 1 41023 41023 9.3474 1.4373 1 12291 15407 8449 8621 14147 14147 0.0050815080869597296 FLFEPVVKA 9 Unmodified _FLFEPVVKA_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3072509765625 2 525.305136 1048.59572 NaN NaN NaN NaN NaN NaN NaN 69.367 1 69.398 68.898 69.898 0.030914 0 0 0 0.25233 1 38126 38126 27.629 7.1752 1 12292 1876 8450 8622 14148 14148 0.07336405488103992 FLFFAREQIN 10 Unmodified _FLFFAREQIN_ 0 0 0 REV__ENSG00000124126|ENST00000371941|PREX1 REV__ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8406372070312 2 642.840405 1283.66626 0.63993 0.00041137 -1.674 -0.0010761 -1.0341 -0.00066477 642.8390661872481 99.541 0.093117 93.366 93.306 93.399 -6.1757 12 5 3 0 0 0 0.095098 1 66327 66327 47.749 3.9763 1 46973000 + 12293 19415 8451 8623 14149 14149 0.03577078805756173 FLFHAEWWP 9 Unmodified _FLFHAEWWP_ 0 0 0 REV__ENST00000466883.5_1_7:65440836-65441142:-|nuORF REV__ENST00000466883.5_1_7:65440836-65441142:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7987670898438 2 616.798009 1231.58147 NaN NaN NaN NaN NaN NaN NaN 61.2 1 61.2 60.7 61.7 0 0 0 0 0.85737 1 34125 34125 0.6015 0.076735 1 + 12294 27419 8452 8624 14150 14150 -0.025062469402200804 FLFLIVRW 8 Unmodified _FLFLIVRW_ 0 0 0 ENST00000471405.5_1_7:135366313-135386730:-|nuORF ENST00000471405.5_1_7:135366313-135386730:-|nuORF ENST00000471405.5_1_7:135366313-135386730:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 547.3316650390625 2 547.331488 1092.64842 NaN NaN NaN NaN NaN NaN NaN 108.32 1 102.15 101.65 102.65 -6.1757 0 0 0 0.97444 1 72403 72403 0.69038 0 1 12295 13872 8453 8625 14151 14151 0.10580408341570546 FLFLKVNDPH 10 Unmodified _FLFLKVNDPH_ 0 0 0 REV__nc|ENSG00000058091|O94921-3|CDK14 REV__nc|ENSG00000058091|O94921-3|CDK14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 614.7927856445312 2 615.337498 1228.66044 -0.0051309 -3.1572E-06 -0.20732 -0.00012757 -0.21245 -0.00013073 615.3381673633645 84.774 0.22669 78.598 78.463 78.689 -6.1757 24 12 3 0 0 0 0.23412 1 55707 55707 9.3831 2.66 1 16318000 + 12296 17311 8454 8626 14152 14152 0.05525980294078181 FLFMSSSTAWL 11 Unmodified _FLFMSSSTAWL_ 0 0 0 REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16 REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.5457458496094 3 430.546008 1288.6162 NaN NaN NaN NaN NaN NaN NaN 17.157 1 17.158 16.658 17.658 0.0010548 0 0 0 0.86932 1 8511 8511 4.4062 1.0504 1 + 12297 16951 8455 8627 14153 14153 -0.016567919143881227 FLFNKVVNL 9 Unmodified _FLFNKVVNL_ 0 0 0 ENSG00000119801|ENST00000261353|YPEL5 ENSG00000119801|ENST00000261353|YPEL5 ENSG00000119801|ENST00000261353|YPEL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3243408203125 2 547.32386 1092.63317 0.14127 7.732E-05 1.111 0.00060807 1.2523 0.00068539 547.3242440354061 76.816 0.38598 76.867 76.698 77.084 0.050102 37 15 3 0 0 0 0.0047067 2 42346 42346;42454 147.83 86.474 1 18566000 12298 3471 8456 8628 14154;14155 14154 0.0905549675369457 FLFQDILVL 9 Unmodified _FLFQDILVL_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3265380859375 2 554.326068 1106.63758 1.1455 0.00063497 1.4045 0.00077853 2.5499 0.0014135 554.3265753589061 102.46 0.087234 96.286 96.239 96.326 -6.1757 28 11 3 0 0 0 0.091924 1 68754 68754 46.021 11.919 1 11171000 12299 16391 8457 8629 14156 14156 0.08852961176603458 FLFRKKRHPQP 11 Unmodified _FLFRKKRHPQP_ 0 0 0 ENST00000342992.10_3_2:179536946-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 727.4324951171875 2 727.430587 1452.84662 NaN NaN NaN NaN NaN NaN NaN 91.37 1 91.406 90.906 91.906 0.036499 0 0 0 0.94144 1 50823 50823 1.4819 0 1 12300 11994 8458 8630 14157 14157 0.13831222253270425 FLFRNRGF 8 Unmodified _FLFRNRGF_ 0 0 0 ENSG00000152977|ENST00000282928|ZIC1 ENSG00000152977|ENST00000282928|ZIC1 ENSG00000152977|ENST00000282928|ZIC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.789794921875 2 528.790518 1055.56648 NaN NaN NaN NaN NaN NaN NaN 66.561 1 66.561 66.061 67.061 0 0 0 0 0.94749 1 37122 37122 11.114 2.5212 1 12301 6225 8459 8631 14158 14158 0.04092305982453581 FLFSFFLFFFF 11 Unmodified _FLFSFFLFFFF_ 0 0 0 ENST00000407418.7_1_22:39258389-39258611:-|nuORF ENST00000407418.7_1_22:39258389-39258611:-|nuORF ENST00000407418.7_1_22:39258389-39258611:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 754.88720703125 2 754.886293 1507.75803 1.1782 0.0008894 -1.0193 -0.00076949 0.15885 0.00011991 754.8852521156817 92.001 0.35473 85.825 85.612 85.967 -6.1757 63 20 4 0 0 0 0.54936 2 60723 60723;60847 13.906 1.0334 1 64508000 12302 12941 8460 8632 14159;14160 14159 0.02446369170206708 FLFSRTHF 8 Unmodified _FLFSRTHF_ 0 0 0 ENST00000535549.5_1_11:128331948-128332230:-|nuORF ENST00000535549.5_1_11:128331948-128332230:-|nuORF ENST00000535549.5_1_11:128331948-128332230:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.776611328125 2 527.777077 1053.5396 1.0436 0.00055081 -0.42979 -0.00022683 0.61384 0.00032397 527.7767511174368 88.763 0.78391 82.587 82.292 83.076 -6.1757 116 37 4 0 0 0 0.72953 1 58470 58470 14.582 0 1 136370000 12303 14972 8461 8633 14161 14161 0.014971973712817999 FLFVCFLFF 9 Unmodified _FLFVCFLFF_ 0 0 0 ENST00000546516.5_1_16:712885-713302:+|nuORF ENST00000546516.5_1_16:712885-713302:+|nuORF ENST00000546516.5_1_16:712885-713302:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.873779296875 3 394.873397 1181.59836 NaN NaN NaN NaN NaN NaN NaN 44.376 1 44.354 43.854 44.854 -0.022064 0 0 0 0.24185 1 23809 23809 25.399 0 1 12304 15107 8462 8634 14162 14162 0.0148253762135937 FLFWFGLVF 9 Unmodified _FLFWFGLVF_ 0 0 0 ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF ENST00000432176.6_1_7:22984841-22985015:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.547607421875 3 392.547789 1174.62154 NaN NaN NaN NaN NaN NaN NaN 20.958 1 20.986 20.486 21.486 0.028357 0 0 0 0.84369 1 10621 10621 1.1933 0 1 12305 13271 8463 8635 14163 14163 0.04121299730354622 FLFYLPSTDNL 11 Unmodified _FLFYLPSTDNL_ 0 0 0 REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF REV__ENST00000538029.1_1_12:9102760-9162130:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3414916992188 2 665.339904 1328.66525 NaN NaN NaN NaN NaN NaN NaN 73.148 1 73.148 72.648 73.648 0 0 0 0 0.94184 1 40721 40721 1.1933 0.12188 1 + 12306 28557 8464 8636 14164 14164 0.014068196461721527 FLGEGHHRV 9 Unmodified _FLGEGHHRV_ 0 0 0 ENSG00000089199|ENST00000378961|CHGB ENSG00000089199|ENST00000378961|CHGB ENSG00000089199|ENST00000378961|CHGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1051.544067382812 1 1051.54319 1050.53591 0.24947 0.00026233 2.5324 0.0026629 2.7819 0.0029253 1051.5459839676655 96.588 0.32238 96.283 96.131 96.453 -0.30473 40 18 3 0 0 0 0.55775 1 52837 52837 3.9444 0 1 1291800 12307 1521 8465 8637 14165 14165 0.012665275974313772 FLGEKIASV 9 Unmodified _FLGEKIASV_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2804565429688 2 482.279118 962.543683 0.80521 0.00038834 -0.52446 -0.00025294 0.28075 0.0001354 482.27892418169967 49.479 0.27511 49.087 48.943 49.218 -0.3923 32 13 3 0 0 0 0.012228 1 26566 26566 74.2 15.521 1 14561000 12308 6104 8466 8638 14166 14166 0.06091242074330694 FLGEKIASV 9 Unmodified _FLGEKIASV_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2796325683594 2 482.279118 962.543683 0.4303 0.00020753 -0.13399 -6.462E-05 0.29632 0.00014291 482.27906826917786 49.11 0.28808 49.067 48.927 49.215 -0.04369 20 13 2 0 0 0 0.19127 1 26539 26539 24.021 3.5669 1 1195800 12309 6104 8466 8638 14167 14167 0.06091242074330694 FLGEKIASV 9 Unmodified _FLGEKIASV_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 482.279118 962.543683 0.42553 0.00020522 -0.919 -0.00044321 -0.49347 -0.00023799 482.2789659655649 49.151 0.15225 49.151 49.083 49.236 0 0.049239 -0.00031611 NaN 74.2 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 923710 12310 6104 8466 8638 0.06091242074330694 FLGENISNFL 10 Unmodified _FLGENISNFL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2994384765625 2 577.298039 1152.58152 2.1151 0.001221 1.6621 0.00095955 3.7772 0.0021806 577.2981468207346 93.635 0.92989 93.658 93.214 94.144 0.02298 78 36 4 0 0 0 0.067957 2 52111 52011;52111 53.833 21.047 1 13077000 12311 1799 8467 8639 14168;14169 14169 0.011337082691625255 FLGENISNFL 10 Unmodified _FLGENISNFL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3008422851562 2 577.298039 1152.58152 1.3791 0.00079617 -0.88302 -0.00050977 0.49612 0.00028641 577.2974353223285 100.12 0.30314 93.942 93.755 94.058 -6.1757 45 16 4 0 0 0 0.067957 1 66836 66836 53.833 29.812 1 121700000 12312 1799 8467 8639 14170 14170 0.011337082691625255 FLGHRFGDWR 10 Unmodified _FLGHRFGDWR_ 0 0 0 LIM2|p.R129H|1|0.19|ENSG00000105370|chr19:51380579-51380579|C/T|missense_variant LIM2|p.R129H|1|0.19|ENSG00000105370|chr19:51380579-51380579|C/T|missense_variant LIM2|p.R129H|1|0.19|ENSG00000105370|chr19:51380579-51380579|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.88818359375 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 55.795 1 55.795 55.295 56.295 0 0 0 0 1.0019 1 31009 31009 0.15932 0 1 12313 15978 8468 8640 14171 14171 0.008538634428759906 FLGIISIPPF 10 Unmodified _FLGIISIPPF_ 0 0 0 nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1 nc|ENSG00000050426|Q6P1Q0-2|LETMD1 nc|ENSG00000050426|Q6P1Q0-2|LETMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3289184570312 2 552.328611 1102.64267 0.54253 0.00029965 0.78823 0.00043536 1.3308 0.00073502 552.3288210934116 99.1 0.16729 92.924 92.841 93.009 -6.1757 14 9 2 0 0 0 0.46535 1 65930 65930 18.135 3.5533 1 42612000 12314 724 8469 8641 14172 14172 0.09545265039218975 FLGNFLTTL 9 Unmodified _FLGNFLTTL_ 0 0 0 ENSG00000188735|ENST00000449592|TMEM120B ENSG00000188735|ENST00000449592|TMEM120B ENSG00000188735|ENST00000449592|TMEM120B MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2879638671875 2 513.286943 1024.55933 1.5588 0.00080012 0.91192 0.00046808 2.4707 0.0012682 513.2878137402349 100.84 0.10606 94.661 94.611 94.717 -6.1757 11 6 2 0 0 0 0.25297 1 67569 67569 19.439 6.9074 1 49898000 12315 9689 8470 8642 14173 14173 0.04803528591378381 FLGNINRP 8 Unmodified _FLGNINRP_ 0 0 0 REV__ENSG00000165805|ENST00000298699|C12orf50 REV__ENSG00000165805|ENST00000298699|C12orf50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.763671875 2 465.761426 929.5083 1.1283 0.00052553 2.2058 0.0010274 3.3341 0.0015529 465.7622749748201 71.181 0.44534 71.22 71.002 71.447 0.039024 28 19 2 0 0 0 0.80232 1 39211 39211 5.2307 2.3415 1 989350 + 12316 22052 8471 8643 14174 14174 0.04072624337175057 FLGQTLGPPR 10 Unmodified _FLGQTLGPPR_ 0 0 0 ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-3|BRAT1;ENST00000469750.5_1_7:2577705-2579570:-|nuORF ENSG00000106009|ENST00000340611|BRAT1;ENST00000469750.5_1_7:2577705-2579570:-|nuORF ENST00000469750.5_1_7:2577705-2579570:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.8655700683594 3 362.541586 1084.60293 1.1725 0.00042508 0.29984 0.0001087 1.4723 0.00053378 362.54190227255924 39.747 0.24707 35.296 35.123 35.37 -4.4509 23 15 2 0 0 0 0.23325 1 23666 23666 5.7834 3.2849 1 13248000 12317 2390;13845 8472 8644 14175 14175 0.06401138088517655 FLGSFNRCIF 10 Unmodified _FLGSFNRCIF_ 0 0 0 REV__ENST00000377387.5_1_11:64532125-64532308:-|nuORF REV__ENST00000377387.5_1_11:64532125-64532308:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8710021972656 3 401.870826 1202.59065 NaN NaN NaN NaN NaN NaN NaN 51.552 1 51.498 50.998 51.998 -0.053871 0 0 0 0.96627 1 27911 27911 2.086 0 1 + 12318 26247 8473 8645 14176 14176 -0.002542216461733915 FLGSPDAP 8 Unmodified _FLGSPDAP_ 0 0 0 ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3938598632812 1 803.393396 802.386119 -0.025425 -2.0426E-05 0.051461 4.1344E-05 0.026036 2.0918E-05 803.3940951502866 62.907 0.41782 62.907 62.655 63.073 0 36 17 3 0 0 0 0.28922 1 35039 35039 56.541 6.8724 1 2804600 12319 14145 8474 8646 14177 14177 -0.02297837465050634 FLGSPDAP 8 Unmodified _FLGSPDAP_ 0 0 0 ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.3948364257812 1 803.393396 802.386119 1.313 0.0010549 0.61743 0.00049604 1.9304 0.0015509 803.3947728748317 70.601 0.40872 64.425 64.168 64.577 -6.1757 30 21 2 0 0 0 0.31612 2 46103 46103;46241 53.576 6.6547 1 19346000 12320 14145 8474 8646 14178;14179 14178 -0.02297837465050634 FLGTFILKV 9 Unmodified _FLGTFILKV_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000461999.1_1_11:118968164-118968284:-|nuORF nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.323974609375 2 519.323328 1036.6321 1.0446 0.0005425 -0.49561 -0.00025738 0.54902 0.00028512 519.3232326465587 99.306 0.10851 93.13 93.066 93.174 -6.1757 12 6 2 0 0 0 0.020973 1 66106 66106 62.573 16.552 1 37882000 12321 8197 8475 8647 14180 14180 0.11525282384786806 FLGTYVAVF 9 Unmodified _FLGTYVAVF_ 0 0 0 ENSG00000131400|ENST00000253719|NAPSA;ENST00000599181.1_1_19:50861812-50862043:-|nuORF;ENST00000598044.1_1_19:50861812-50862477:-|nuORF ENSG00000131400|ENST00000253719|NAPSA ENSG00000131400|ENST00000253719|NAPSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7763366699219 2 508.776211 1015.53787 1.1643 0.00059236 -1.3631 -0.00069354 -0.19887 -0.00010118 508.7761861511568 101.08 0.17529 94.908 94.815 94.99 -6.1757 15 9 2 0 0 0 0.045537 1 67751 67751 46.921 3.9529 1 33833000 12322 4323 8476 8648 14181 14181 0.030721435626674065 FLGVDKVIT 9 Unmodified _FLGVDKVIT_ 0 0 0 ENSG00000278619|ENST00000614766|MRM1 ENSG00000278619|ENST00000614766|MRM1 ENSG00000278619|ENST00000614766|MRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2955322265625 2 496.294768 990.574983 1.6307 0.00080933 0.55999 0.00027792 2.1907 0.0010872 496.29499960830316 104.62 0.21295 98.44 98.284 98.497 -6.1757 23 13 2 0 0 0 0.55775 1 69974 69974 3.9444 1.6417 1 41863000 12323 10936 8477 8649 14182 14182 0.0793181510841805 FLGWVEPHL 9 Unmodified _FLGWVEPHL_ 0 0 0 REV__nc|ENSG00000155511|P42261-6|GRIA1 REV__nc|ENSG00000155511|P42261-6|GRIA1 MSMS AL20221201_MKP_PDAC_01 4 549.294189453125 2 549.292559 1096.57057 NaN NaN NaN NaN NaN NaN NaN 63.909 1 57.734 57.234 58.234 -6.1757 0 0 0 0.3092 1 41361 41361 24.674 1.5255 1 + 12324 29717 8478 8650 14183 14183 0.026143506855078158 FLHAVDVVL 9 Unmodified _FLHAVDVVL_ 0 0 0 nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF nc|ENSG00000112763|Q7KYR7-5|BTN2A1 nc|ENSG00000112763|Q7KYR7-5|BTN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.794921875 2 506.794935 1011.57532 -0.48054 -0.00024354 1.4338 0.00072666 0.95328 0.00048312 506.79551026327124 69.736 0.31763 69.257 69.064 69.382 -0.47903 22 13 2 0 0 0 0.18465 1 38118 38118 24.674 13.034 1 1344400 12325 2918 8479 8651 14184 14184 0.06999234828288081 FLHAVDVVL 9 Unmodified _FLHAVDVVL_ 0 0 0 nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;nc|ENSG00000112763|Q7KYR7-3|BTN2A1;ENST00000377600.6_1_6:26463094-26468774:+|nuORF nc|ENSG00000112763|Q7KYR7-5|BTN2A1 nc|ENSG00000112763|Q7KYR7-5|BTN2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7962646484375 2 506.794935 1011.57532 0.76867 0.00038956 0.84388 0.00042767 1.6125 0.00081723 506.79575237420835 91.37 0.30308 85.194 85.028 85.331 -6.1757 22 16 2 0 0 0 0.016494 1 60407 60407 67.035 32.848 1 6374600 12326 2918 8479 8651 14185 14185 0.06999234828288081 FLHDGLIRV 9 Unmodified _FLHDGLIRV_ 0 0 0 ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-5|HECTD4 ENSG00000173064|ENST00000682272|HECTD4 ENSG00000173064|ENST00000682272|HECTD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2102661132812 3 357.209948 1068.60801 -0.089652 -3.2025E-05 -0.12015 -4.2919E-05 -0.2098 -7.4944E-05 357.2101600910179 51.637 0.32002 51.579 51.494 51.814 -0.058918 29 15 3 0 0 0 0.34748 1 27967 27967 14.957 7.6679 1 2254100 12327 8283 8480 8652 14186 14186 0.07645441951149223 FLHDHVDLQV 10 Unmodified _FLHDHVDLQV_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2120056152344 3 408.212017 1221.61422 0.66635 0.00027201 0.074068 3.0235E-05 0.74042 0.00030225 408.211994054999 47.472 0.24337 47.119 46.959 47.203 -0.3526 16 11 2 0 0 0 0.41822 1 25431 25431 20.581 17.586 1 4286900 12328 2711 8481 8653 14187 14187 0.012279153919735109 FLHDNMVEI 9 Oxidation (M) _FLHDNM(Oxidation (M))VEI_ FLHDNM(1)VEI FLHDNM(54)VEI 0 0 1 nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF nc|ENSG00000005156|P49916-4|LIG3 nc|ENSG00000005156|P49916-4|LIG3 MSMS AL20221201_MKP_PDAC_01 4 567.2691040039062 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 53.446 1 47.642 47.142 48.142 -5.8042 0 0 0 0.059498 1 33787 33787 53.833 19.431 1 12329 298 8482 8654 14188 14188 27 -0.038665110166903105 FLHDNMVEI 9 Oxidation (M) _FLHDNM(Oxidation (M))VEI_ FLHDNM(1)VEI FLHDNM(50)VEI 0 0 1 nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF nc|ENSG00000005156|P49916-4|LIG3 nc|ENSG00000005156|P49916-4|LIG3 MSMS AL20221201_MKP_PDAC_01 4 567.26953125 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 53.709 1 47.905 47.405 48.405 -5.8042 0 0 0 0.074615 1 33976 33976 49.933 21.446 1 12330 298 8482 8654 14189 14189 27 -0.038665110166903105 FLHDNMVEI 9 Unmodified _FLHDNMVEI_ 0 0 0 nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000593099.5_1_17:33324760-33324883:+|nuORF nc|ENSG00000005156|P49916-4|LIG3 nc|ENSG00000005156|P49916-4|LIG3 MSMS AL20221201_MKP_PDAC_01 4 559.2740478515625 2 559.270967 1116.52738 NaN NaN NaN NaN NaN NaN NaN 63.727 1 57.552 57.052 58.052 -6.1757 0 0 0 0.027645 1 41226 41226 69.105 19.172 1 12331 298 8482 8655 14190 14190 -0.02622207154058742 FLHEATARL 9 Unmodified _FLHEATARL_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1976928710938 3 353.197819 1056.57163 -0.2831 -9.9989E-05 1.0537 0.00037218 0.77065 0.00027219 353.19816625438403 33.331 0.28896 33.171 33.008 33.297 -0.15918 30 11 3 0 0 0 0.073961 1 17358 17358 39.213 17.676 1 5580200 12332 1078 8483 8656 14191 14191 0.04560565054430299 FLHEATARL 9 Unmodified _FLHEATARL_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1972961425781 3 353.197819 1056.57163 -0.12282 -4.3381E-05 0.7723 0.00027278 0.64948 0.00022939 353.1980656579903 33.114 0.23492 33.143 33.019 33.253 0.029747 21 9 3 0 0 0 0.094905 1 17411 17411 34.222 11.485 1 2037400 12333 1078 8483 8656 14192 14192 0.04560565054430299 FLHEATARL 9 Unmodified _FLHEATARL_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1978149414062 3 353.197819 1056.57163 1.7698 0.00062508 -0.56537 -0.00019969 1.2044 0.00042539 353.1976813890793 37.947 0.48861 33.578 33.381 33.87 -4.3689 65 28 3 0 0 0 0.016448 2 22261 22261;22389 67.081 39.452 1 32356000 12334 1078 8483 8656 14193;14194 14193 0.04560565054430299 FLHEATVRL 9 Unmodified _FLHEATVRL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8820190429688 3 362.541586 1084.60293 -0.21828 -7.9136E-05 0.17159 6.221E-05 -0.046685 -1.6925E-05 362.54157161454424 41.882 0.18785 41.873 41.773 41.961 -0.0088196 15 8 2 0 0 0 0.10134 1 22383 22383 32.898 14.558 1 8812000 12335 10194 8484 8657 14195 14195 0.06401138088517655 FLHEATVRL 9 Unmodified _FLHEATVRL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MSMS AL20221201_MKP_PDAC_01 4 362.5425109863281 3 362.541586 1084.60293 NaN NaN NaN NaN NaN NaN NaN 46.56 1 41.479 40.979 41.979 -5.0805 0 0 0 0.055406 1 28793 28793 55.235 31.445 1 12336 10194 8484 8657 14196 14196 0.06401138088517655 FLHERGIIY 9 Unmodified _FLHERGIIY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ nc|ENSG00000067606|Q05513-2|PRKCZ nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3192138671875 2 574.316566 1146.61858 0.38508 0.00022116 -0.034109 -1.959E-05 0.35097 0.00020157 574.3167574269937 62.1 0.27475 62.067 61.906 62.181 -0.032787 43 13 5 0 0 0 0.41742 1 33890 33890 11.64 0.81637 1 6432500 12337 961 8485 8658 14197 14197 0.051134246055880794 FLHFVDQAI 9 Unmodified _FLHFVDQAI_ 0 0 0 ENST00000359890.7_2_14:23370637-23370934:-|nuORF ENST00000359890.7_2_14:23370637-23370934:-|nuORF ENST00000359890.7_2_14:23370637-23370934:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.28759765625 2 545.290017 1088.56548 0.10277 5.6039E-05 0.089532 4.8821E-05 0.1923 0.00010486 545.2899182205019 59.228 0.55594 58.738 58.412 58.968 -0.49079 105 25 5 0 0 0 0.46577 1 32348 32348 9.3474 0.75416 1 189010000 12338 12152 8486 8659 14198 14198 0.024740468228856116 FLHLQHGL 8 Unmodified _FLHLQHGL_ 0 0 0 REV__ENST00000371712.3_1_9:139327034-139327620:-|nuORF REV__ENST00000371712.3_1_9:139327034-139327620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7720947265625 2 482.771794 963.529036 0.62358 0.00030105 -2.2891 -0.0011051 -1.6655 -0.00080405 482.77129947314796 75.856 0.27002 75.379 75.235 75.505 -0.47714 22 11 3 0 0 0 0.76859 1 41529 41529 11.114 0 1 784050 + 12339 26089 8487 8660 14199 14199 0.045812147168589945 FLHMVYLSLMF 11 Unmodified _FLHMVYLSLMF_ 0 0 0 ENST00000367941.6_1_6:132781183-132781276:-|nuORF ENST00000367941.6_1_6:132781183-132781276:-|nuORF ENST00000367941.6_1_6:132781183-132781276:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 701.388671875 2 700.858895 1399.70324 0.91947 0.00064442 -2.8274 -0.0019816 -1.908 -0.0013372 700.8574245425657 90.613 0.26824 84.437 84.324 84.593 -6.1757 23 15 2 0 0 0 0.27386 1 59839 59839 14.838 2.5976 1 9458800 12340 12251 8488 8661 14200 14200 0.019372910356423745 FLHPHQLP 8 Unmodified _FLHPHQLP_ 0 0 0 REV__ENSG00000076201|ENST00000265562|PTPN23 REV__ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.772216796875 2 494.771794 987.529036 0.47827 0.00023663 -0.11552 -5.7158E-05 0.36274 0.00017948 494.77154911034285 99.725 0.14478 99.568 99.496 99.641 -0.1575 10 4 3 0 0 0 0.77907 1 54462 54462 10.183 1.5901 1 1776800 + 12341 17584 8489 8662 14201 14201 0.03477214716860999 FLHPPVEYF 9 Unmodified _FLHPPVEYF_ 0 0 0 REV__nc|ENSG00000197879|O00159-2|MYO1C REV__nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.6810302734375 2 574.792392 1147.57023 -0.50403 -0.00028971 -2.1039 -0.0012093 -2.6079 -0.001499 574.7910006019221 101.58 0.11507 101.53 101.46 101.58 -0.045853 5 3 2 0 0 0 0.4887 1 56416 56416 7.9102 0 1 4912300 + 12342 23962 8490 8663 14202 14202 0.002349309656665355 FLHPSQFA 8 Unmodified _FLHPSQFA_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3 ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7430114746094 2 473.742702 945.470852 1.4201 0.00067277 0.19495 9.2354E-05 1.6151 0.00076512 473.7425899050011 58.712 0.35287 52.638 52.403 52.756 -6.0745 30 19 2 0 0 0 0.61462 1 37636 37636 24.674 0 1 7507600 12343 4671 8491 8664 14203 14203 -0.004064669284275624 FLHRRRRVRK 10 Unmodified _FLHRRRRVRK_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 712.4525756835938 2 712.45272 1422.89089 NaN NaN NaN NaN NaN NaN NaN 88.648 1 88.144 87.644 88.644 -0.50423 0 0 0 1.0061 1 48481 48481 0 0 1 12344 1360 8492 8665 14204 14204 0.1963567119007621 FLHSQEMSIL 10 Unmodified _FLHSQEMSIL_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8060302734375 2 602.805174 1203.59579 0.15498 9.3425E-05 -2.0168 -0.0012157 -1.8618 -0.0011223 602.803964401937 76.367 0.25088 75.887 75.74 75.99 -0.47945 22 10 4 0 0 0 0.11755 1 41771 41771 43.858 18.459 1 1727700 12345 3357 8493 8666 14205 14205 0.002140374257805888 FLHTDGEPPL 10 Unmodified _FLHTDGEPPL_ 0 0 0 REV__ENSG00000188959|ENST00000400613|C9orf152 REV__ENSG00000188959|ENST00000400613|C9orf152 MSMS AL20221201_MKP_PDAC_01 4 563.2857666015625 2 563.282389 1124.55022 NaN NaN NaN NaN NaN NaN NaN 103.38 1 97.204 96.704 97.704 -6.1757 0 0 0 0.91523 1 69316 69316 7.2892 1.5574 1 + 12346 23746 8494 8667 14206 14206 -0.007068647649475679 FLHTGRPG 8 Unmodified _FLHTGRPG_ 0 0 0 REV__ENST00000319080.7_12:122630330-122630822:+|nuORF REV__ENST00000319080.7_12:122630330-122630822:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7413330078125 2 442.740494 883.466435 0.98457 0.00043591 0.49121 0.00021748 1.4758 0.00065339 442.74046298381825 39.526 0.29824 35.076 34.896 35.194 -4.4509 27 17 2 0 0 0 0.64853 1 23444 23444 21.747 0 1 9386400 + 12347 25490 8495 8668 14207 14207 0.02004068648670909 FLHTPAVIVL 10 Unmodified _FLHTPAVIVL_ 0 0 0 REV__ENST00000366612.1_1_1:234509543-234509609:+|nuORF REV__ENST00000366612.1_1_1:234509543-234509609:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8433837890625 2 555.33951 1108.66447 3.9747 0.0022073 -0.46187 -0.00025649 3.5128 0.0019508 555.3392488523316 98.393 0.31353 98.365 98.218 98.532 -0.028282 32 11 4 0 0 0 0.33553 1 54645 54645 25.399 0.72543 1 6803100 + 12348 25959 8496 8669 14208 14208 0.11448069787797976 FLHTPAVIVL 10 Unmodified _FLHTPAVIVL_ 0 0 0 REV__ENST00000366612.1_1_1:234509543-234509609:+|nuORF REV__ENST00000366612.1_1_1:234509543-234509609:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.33951 1108.66447 3.9747 0.0022073 -0.46187 -0.00025649 3.5128 0.0019508 555.3392488523316 98.393 0.31353 98.365 98.218 98.532 -0.028282 0 0 NaN 25.399 32 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6803100 + 12349 25959 8496 8669 0.11448069787797976 FLIEEQKIVV 10 Unmodified _FLIEEQKIVV_ 0 0 0 RPL34|p.A94T|1|0.12|ENSG00000109475|chr4:108625138-108625138|G/A|missense_variant;ENST00000407959.1_1_6:5788581-5788740:-|nuORF;ENSG00000109475|ENST00000394667|RPL34 RPL34|p.A94T|1|0.12|ENSG00000109475|chr4:108625138-108625138|G/A|missense_variant RPL34|p.A94T|1|0.12|ENSG00000109475|chr4:108625138-108625138|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3595581054688 2 609.360639 1216.70673 0.66188 0.00040332 -1.5436 -0.00094062 -0.88174 -0.0005373 609.3592962199139 68.086 0.22532 67.604 67.498 67.724 -0.48218 16 10 2 0 0 0 0.44171 1 37213 37213 19.362 4.5237 1 2817800 12350 2652 8497 8670 14209 14209 0.10704000405507941 FLIFIEIAYK 10 Unmodified _FLIFIEIAYK_ 0 0 0 nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1 nc|ENSG00000176884|Q05586-2|GRIN1 nc|ENSG00000176884|Q05586-2|GRIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.8657836914062 2 628.8681 1255.72165 NaN NaN NaN NaN NaN NaN NaN 65.568 1 65.084 64.584 65.584 -0.48428 0 0 0 0.95103 1 35791 35791 5.7319 0.43497 1 12351 8627 8498 8671 14210 14210 0.10401492273490476 FLIHYSSF 8 Unmodified _FLIHYSSF_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 MSMS AL20221201_MKP_PDAC_01 4 507.2965393066406 2 507.258185 1012.50182 NaN NaN NaN NaN NaN NaN NaN 101.96 1 95.789 95.289 96.289 -6.1757 0 0 0 0.95201 1 68439 68439 10.183 0 1 12352 16103 8499 8672 14211 14211 -0.003933136141881732 FLIILSYVF 9 Unmodified _FLIILSYVF_ 0 0 0 ENSG00000176231|ENST00000322107|OR10H4 ENSG00000176231|ENST00000322107|OR10H4 ENSG00000176231|ENST00000322107|OR10H4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8331909179688 2 557.830986 1113.64742 NaN NaN NaN NaN NaN NaN NaN 77.722 1 77.774 77.274 78.274 0.052452 0 0 0 0.46757 1 42904 42904 16.942 0 1 12353 8578 8500 8673 14212 14212 0.09514149181973153 FLIISHKTQ 9 Unmodified _FLIISHKTQ_ 0 0 0 ENST00000548147.5_1_12:49047690-49047822:-|nuORF ENST00000548147.5_1_12:49047690-49047822:-|nuORF ENST00000548147.5_1_12:49047690-49047822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8187866210938 2 543.818941 1085.62333 0.42489 0.00023106 -0.96213 -0.00052322 -0.53724 -0.00029216 543.8183248760505 69.359 0.422 69.39 69.207 69.629 0.030914 42 23 2 0 0 0 0.08691 1 38212 38212 36.127 0.082828 1 12165000 12354 15134 8501 8674 14213 14213 0.08394308748324875 FLIKGFSFY 9 Unmodified _FLIKGFSFY_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3034057617188 2 561.305136 1120.59572 1.0925 0.0006132 0.52957 0.00029725 1.622 0.00091046 561.3047668529188 57.168 0.94724 51.141 50.857 51.804 -6.0275 88 53 4 0 0 0 0.1773 1 36931 36931 25.399 0 1 72128000 + 12355 18330 8502 8675 14214 14214 0.04024405488098637 FLIKRRDKT 9 Unmodified _FLIKRRDKT_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MSMS AL20221201_MKP_PDAC_01 4 392.577880859375 3 392.911902 1175.71388 NaN NaN NaN NaN NaN NaN NaN 93.163 1 86.987 86.487 87.487 -6.1757 0 0 0 0.82283 1 61648 61648 4.897 2.1618 1 12356 3093 8503 8676 14215 14215 0.13304777796588496 FLILEKLKI 9 Unmodified _FLILEKLKI_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2887573242188 3 372.917882 1115.73182 0.23523 8.7722E-05 0.74081 0.00027626 0.97604 0.00036398 373.2525469481866 79.364 0.15868 79.419 79.336 79.495 0.05497 8 5 2 0 0 0 0.50598 1 43873 43873 7.1017 0 1 736000 12357 3934 8504 8677 14216 14216 0.17858099998738908 FLILLGIGIYF 11 Unmodified _FLILLGIGIYF_ 0 0 0 nc|ENSG00000073008|P15151-4|PVR;ENST00000187830.2_1_19:45147391-45165075:+|nuORF;nc|ENSG00000073008|P15151|PVR;ENSG00000073008|ENST00000425690|PVR nc|ENSG00000073008|P15151-4|PVR nc|ENSG00000073008|P15151-4|PVR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5936279296875 3 423.593287 1267.75803 NaN NaN NaN NaN NaN NaN NaN 18.821 1 18.827 18.327 19.327 0.0060463 0 0 0 0.94148 1 9553 9553 1.4551 0 1 12358 1098 8505 8678 14217 14217 0.134863691702094 FLINFIHTL 9 Unmodified _FLINFIHTL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3258056640625 2 559.32386 1116.63317 2.1874 0.0012235 0.63861 0.00035719 2.8261 0.0015807 559.3238285173899 93.377 0.35892 93.4 93.214 93.573 0.022987 33 13 3 0 0 0 0.0083938 1 51902 51902 108 55.729 1 8916300 12359 9843 8506 8679 14218 14218 0.07951496753685205 FLIQHLPLV 9 Unmodified _FLIQHLPLV_ 0 0 0 ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF ENST00000430069.5_1_3:176771676-176782752:-|nuORF ENST00000430069.5_1_3:176771676-176782752:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3341674804688 2 540.334227 1078.6539 NaN NaN NaN NaN NaN NaN NaN 84.158 1 84.221 83.721 84.721 0.063171 0 0 0 0.010369 1 46562 46562 123.1 63.301 1 12360 13157 8507 8680 14219 14219 0.1177208713336313 FLIQHLPLV 9 Unmodified _FLIQHLPLV_ 0 0 0 ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF ENST00000430069.5_1_3:176771676-176782752:-|nuORF ENST00000430069.5_1_3:176771676-176782752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.334228515625 2 540.334227 1078.6539 -0.23677 -0.00012794 0.85289 0.00046084 0.61612 0.00033291 540.3345807517678 98.887 0.14458 92.711 92.648 92.793 -6.1757 23 10 3 0 0 0 0.010877 1 65718 65718 77.984 28.315 1 102610000 12361 13157 8507 8680 14220 14220 0.1177208713336313 FLIRESETL 9 Unmodified _FLIRESETL_ 0 0 0 nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN nc|ENSG00000254087|P07948-2|LYN nc|ENSG00000254087|P07948-2|LYN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3065185546875 2 554.305864 1106.59717 0.19052 0.0001056 -2.0717 -0.0011483 -1.8811 -0.0010427 554.3057540727798 52.145 0.27205 52.145 52.039 52.311 0 16 11 2 0 0 0 0.085319 1 28885 28885 36.506 7.4246 1 815970 12362 10771 8508 8681 14221 14221 0.04813994786195508 FLIRESETL 9 Unmodified _FLIRESETL_ 0 0 0 nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN nc|ENSG00000254087|P07948-2|LYN nc|ENSG00000254087|P07948-2|LYN MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3070678710938 2 554.305864 1106.59717 1.1876 0.00065829 3.3422 0.0018526 4.5298 0.0025109 554.3070888250555 59.278 0.6783 53.203 52.719 53.397 -6.0745 60 37 3 0 0 0 0.014417 1 37779 37779 69.105 27.01 1 57624000 12363 10771 8508 8681 14222 14222 0.04813994786195508 FLISQVGPVY 10 Unmodified _FLISQVGPVY_ 0 0 0 nc|ENSG00000112337|O00624|SLC17A2 nc|ENSG00000112337|O00624|SLC17A2 nc|ENSG00000112337|O00624|SLC17A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8140258789062 2 561.813325 1121.6121 1.2663 0.00071141 1.7429 0.00097917 3.0091 0.0016906 561.8137714353651 57.858 0.4918 57.792 57.438 57.93 -0.066036 32 22 2 0 0 0 0.43662 1 31498 31498 22.736 1.1993 1 3538300 12364 16125 8509 8682 14223 14223 0.056154866542101445 FLITITMWCRR 11 Unmodified _FLITITMWCRR_ 0 0 0 REV__ENST00000415083.6_1_18:23667504-23670478:-|nuORF REV__ENST00000415083.6_1_18:23667504-23670478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.8895263671875 2 720.386142 1438.75773 0.3477 0.00025048 1.0629 0.00076566 1.4106 0.0010161 720.3869025174882 77.779 0.33327 77.831 77.654 77.987 0.052452 42 13 4 0 0 0 0.631 1 43009 43009 17.113 9.5039 1 22879000 + 12365 26753 8510 8683 14224 14224 0.05590302907057776 FLITLGEHL 9 Unmodified _FLITLGEHL_ 0 0 0 REV__ENST00000586409.5_1_17:74391712-74392192:-|nuORF REV__ENST00000586409.5_1_17:74391712-74392192:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.137939453125 2 521.800217 1041.58588 0.36813 0.00019209 3.1667 0.0016524 3.5348 0.0018445 521.8013823993623 88.742 0.20734 88.238 88.091 88.298 -0.50423 13 8 2 0 0 0 0.19613 1 48503 48503 12.532 3.1841 1 262360 + 12366 29112 8511 8684 14225 14225 0.0667521748271156 FLITVRQHI 9 Unmodified _FLITVRQHI_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.230224609375 3 376.229231 1125.66586 1.7373 0.00065362 0.26914 0.00010126 2.0064 0.00075488 376.22975559832446 86.682 0.3521 80.507 80.379 80.731 -6.1757 40 18 4 0 0 0 0.13231 2 57221 57097;57221 29.841 6.0508 1 16307000 12367 1325 8512 8685 14226;14227 14227 0.10805703876553707 FLKDLVASV 9 Unmodified _FLKDLVASV_ 0 0 0 ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1 ENST00000530791.5_1_11:65687742-65688356:+|nuORF ENST00000530791.5_1_11:65687742-65688356:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2946166992188 2 496.294768 990.574983 NaN NaN NaN NaN NaN NaN NaN 62.737 1 62.251 61.751 62.751 -0.48617 0 0 0 0.58748 1 34200 34200 13.042 0.51092 1 12368 8526 8513 8686 14228 14228 0.07931815108429419 FLKELVEPV 9 Unmodified _FLKELVEPV_ 0 0 0 ENST00000582356.5_1_17:7123904-7124179:+|nuORF;ENST00000582056.5_1_17:7123303-7124179:+|nuORF;ENST00000581562.5_1_17:7123303-7125294:+|nuORF;ENST00000577191.5_1_17:7123303-7125473:+|nuORF;nc|ENSG00000072778|P49748-2|ACADVL;ENSG00000072778|ENST00000356839|ACADVL;nc|ENSG00000072778|P49748-3|ACADVL ENST00000582356.5_1_17:7123904-7124179:+|nuORF;nc|ENSG00000072778|P49748-3|ACADVL ENST00000582356.5_1_17:7123904-7124179:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8140258789062 2 537.3157 1072.61685 0.90538 0.00048648 -0.39341 -0.00021138 0.51198 0.00027509 537.3151114966829 81.008 0.32349 81.068 80.866 81.19 0.059929 19 12 2 0 0 0 0.21052 1 44796 44796 6.7232 0 1 1989600 12369 15571;16050 8514 8687 14229 14229 0.08344370796930889 FLKGFFVSL 9 Unmodified _FLKGFFVSL_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3087158203125 2 529.307678 1056.6008 0.1325 7.0134E-05 1.8149 0.00096062 1.9474 0.0010307 529.3085981985007 21.589 0.085163 21.603 21.535 21.621 0.013796 24 13 2 0 0 0 0.53557 1 11045 11045 2.0598 2.0598 1 2330600 12370 15969 8515 8688 14230 14230 0.07476709350703459 FLKGFFVSL 9 Unmodified _FLKGFFVSL_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|151|1|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.307678 1056.6008 0.1325 7.0134E-05 1.8149 0.00096062 1.9474 0.0010307 529.3085981985007 21.589 0.085163 21.603 21.535 21.621 0.013796 0.061313 -0.00023131 NaN 2.0598 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2330600 12371 15969 8515 8688 0.07476709350703459 FLKIPAFF 8 Unmodified _FLKIPAFF_ 0 0 0 ENST00000462445.1_1_10:70863984-70864131:+|nuORF ENST00000462445.1_1_10:70863984-70864131:+|nuORF ENST00000462445.1_1_10:70863984-70864131:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7923583984375 2 491.791664 981.568775 1.1897 0.00058508 0.26264 0.00012917 1.4523 0.00071425 491.7915569824694 95.442 0.40193 89.266 88.949 89.351 -6.1757 38 22 2 0 0 0 0.80044 1 63204 63204 6.3541 0 1 12684000 12372 13678 8516 8689 14231 14231 0.07725341667560315 FLKLFEATYF 10 Unmodified _FLKLFEATYF_ 0 0 0 ENST00000295754.9_1_3:30734893-30735025:+|nuORF ENST00000295754.9_1_3:30734893-30735025:+|nuORF ENST00000295754.9_1_3:30734893-30735025:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2301025390625 3 426.897147 1277.66961 -0.092511 -3.9493E-05 -2.0756 -0.00088608 -2.1681 -0.00092557 426.89676748695393 35.963 0.23211 35.988 35.864 36.096 0.024971 22 10 3 0 0 0 0.57893 1 19024 19024 7.4771 1.2852 1 3377300 12373 11495 8517 8690 14232 14232 0.0418832885975462 FLKLFEATYF 10 Unmodified _FLKLFEATYF_ 0 0 0 ENST00000295754.9_1_3:30734893-30735025:+|nuORF ENST00000295754.9_1_3:30734893-30735025:+|nuORF ENST00000295754.9_1_3:30734893-30735025:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2324523925781 3 426.897147 1277.66961 1.4519 0.00061979 -1.7121 -0.00073088 -0.26022 -0.00011109 427.230954617292 88.251 0.68163 82.076 81.71 82.392 -6.1757 45 37 2 0 0 0 0.54684 2 58161 58161;58205 12.175 2.4105 1 9913600 12374 11495 8517 8690 14233;14234 14233 0.0418832885975462 FLKPLNEEF 9 Unmodified _FLKPLNEEF_ 0 0 0 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.826904296875 2 568.802957 1135.59136 0.22304 0.00012686 -0.017753 -1.0098E-05 0.20528 0.00011677 568.8027537000672 72.848 0.49985 72.89 72.548 73.048 0.041725 49 23 3 0 0 0 0.21052 1 40177 40177 6.7232 1.9672 1 24865000 + 12375 19850 8518 8691 14235 14235 0.028988962745188473 FLKPLNEEF 9 Unmodified _FLKPLNEEF_ 0 0 0 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.802957 1135.59136 0.56733 0.0003227 0.75532 0.00042963 1.3226 0.00075232 568.8034026262741 72.88 0.16758 72.88 72.799 72.966 0 -0.010063 0.00079941 NaN 6.7232 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 545620 + 12376 19850 8518 8691 0.028988962745188473 FLKPLNEEF 9 Unmodified _FLKPLNEEF_ 0 0 0 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 REV__nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.802957 1135.59136 0.84948 0.00048319 0.033598 1.9111E-05 0.88308 0.0005023 568.8027587080563 73.376 0.46208 72.9 72.63 73.092 -0.47588 0.0099531 -2.1618E-05 NaN 6.7232 65 20 4 NaN NaN NaN NaN 0 NaN NaN 0 17262000 + 12377 19850 8518 8691 0.028988962745188473 FLKPPERIF 9 Unmodified _FLKPPERIF_ 0 0 0 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8945007324219 3 382.893848 1145.65972 1.2221 0.00046792 0.058244 2.2301E-05 1.2803 0.00049022 382.8938463435607 48.058 0.70694 42.824 42.435 43.142 -5.2339 95 42 3 0 0 0 0.5029 1 29979 29979 4.5289 0 1 24209000 12378 7237 8519 8692 14236 14236 0.09271185645025071 FLKRGERMSE 10 Unmodified _FLKRGERMSE_ 0 0 0 ENSG00000095777|ENST00000642920|MYO3A;nc|ENSG00000095777|Q8NEV4-2|MYO3A ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5551147460938 3 418.220407 1251.63939 -0.11094 -4.6399E-05 1.4299 0.00059801 1.319 0.00055161 418.22091179576296 33.025 0.27258 33.055 32.914 33.186 0.029743 43 11 5 0 0 0 0.52888 1 17348 17348 8.9762 1.0308 1 27417000 12379 1662 8520 8693 14237 14237 0.023636469229131762 FLKRREETS 9 Unmodified _FLKRREETS_ 0 0 0 REV__ENSG00000181555|ENST00000409792|SETD2 REV__ENSG00000181555|ENST00000409792|SETD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2159423828125 3 389.21565 1164.62512 NaN NaN NaN NaN NaN NaN NaN 103.05 1 103 102.5 103.5 -0.047928 0 0 0 0.85359 1 57229 57229 1.0715 0 1 + 12380 23211 8521 8694 14238 14238 0.04939317766275053 FLKSWKMCCCY 11 Unmodified _FLKSWKMCCCY_ 0 0 0 ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 706.3043823242188 2 706.305115 1410.59568 NaN NaN NaN NaN NaN NaN NaN 40.073 1 35.544 35.044 36.044 -4.5294 0 0 0 0.86932 1 23883 23883 8.7454 1.6437 1 12381 12235 8522 8695 14239 14239 -0.09319745161701576 FLKVHKKAT 9 Unmodified _FLKVHKKAT_ 0 0 0 nc|ENSG00000140876|P0C024-2|NUDT7;ENST00000564085.5_1_16:77769737-77775844:+|nuORF;ENSG00000140876|ENST00000268533|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3372802734375 2 536.337301 1070.66005 1.4854 0.00079666 -1.5244 -0.00081759 -0.039017 -2.0926E-05 536.3362598712605 107.51 0.47321 101.34 101.13 101.6 -6.1757 130 77 2 0 0 0 0.61381 1 72060 72060 0.52476 0 1 4264800 12382 5279 8523 8696 14240 14240 0.12754605364875715 FLKVRNVF 8 Unmodified _FLKVRNVF_ 0 0 0 ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENST00000524683.5_1_11:121174081-121174345:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8110656738281 2 511.810919 1021.60729 NaN NaN NaN NaN NaN NaN NaN 99.792 1 99.756 99.256 100.26 -0.036301 0 0 0 0.95201 1 55427 55427 10.183 0 1 12383 14783 8524 8697 14241 14241 0.09734647302082067 FLKWQQRRFRN 11 Unmodified _FLKWQQRRFRN_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 789.9431762695312 2 789.94185 1577.86915 NaN NaN NaN NaN NaN NaN NaN 89.798 1 89.84 89.34 90.34 0.042175 0 0 0 0.93893 1 49950 49950 3.2813 2.2098 1 + 12384 17527 8525 8698 14242 14242 0.10332821650877122 FLKYLCFS 8 Unmodified _FLKYLCFS_ 0 0 0 REV__ENST00000486276.1_1_13:50100422-50102798:+|nuORF REV__ENST00000486276.1_1_13:50100422-50102798:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2662353515625 2 510.764789 1019.51502 -0.31189 -0.0001593 0.16843 8.6027E-05 -0.14346 -7.3276E-05 510.76485071421035 17.865 0.22315 17.865 17.73 17.953 0 92 39 3 0 0 0 0.80311 1 8765 8765 4.756 0.42677 1 2107900 + 12385 27799 8526 8699 14243 14243 0.006048011735288128 FLLAGLVAVAL 11 Unmodified _FLLAGLVAVAL_ 0 0 0 ENST00000587494.1_1_19:10959184-10970726:+|nuORF;ENSG00000214212|ENST00000397820|C19orf38 ENST00000587494.1_1_19:10959184-10970726:+|nuORF ENST00000587494.1_1_19:10959184-10970726:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.3309326171875 2 543.84971 1085.68487 1.1481 0.0006244 1.7523 0.00095299 2.9004 0.0015774 543.8503899031298 96.806 0.20129 90.63 90.506 90.708 -6.1757 18 11 2 0 0 0 0.27046 1 64158 64158 21.747 5.8995 1 12177000 12386 10485 8527 8700 14244 14244 0.1454524044761456 FLLALEPEL 9 Unmodified _FLLALEPEL_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.8032836914062 2 522.802426 1043.5903 0.44119 0.00023066 0.68171 0.0003564 1.1229 0.00058706 522.802868703913 99.545 0.14945 99.545 99.442 99.592 0 9 4 3 0 0 0 0.068777 1 54965 54965 40.449 8.3316 1 1635900 12387 7093 8528 8701 14245 14245 0.07024681905613761 FLLALEPEL 9 Unmodified _FLLALEPEL_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8041381835938 2 522.802426 1043.5903 3.3942 0.0017745 -1.0017 -0.00052372 2.3924 0.0012508 522.8020584848108 99.549 0.20764 99.512 99.405 99.613 -0.036301 17 7 4 0 0 0 0.068777 1 55307 55307 40.449 8.3316 1 4595100 12388 7093 8528 8701 14246 14246 0.07024681905613761 FLLALEPEL 9 Unmodified _FLLALEPEL_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8029174804688 2 522.802426 1043.5903 1.4877 0.00077776 0.22061 0.00011534 1.7083 0.0008931 522.8025287883625 101.02 0.12717 94.839 94.78 94.907 -6.1757 17 6 3 0 0 0 0.027803 1 67713 67713 56.541 9.6204 1 185830000 12389 7093 8528 8701 14247 14247 0.07024681905613761 FLLDGFPRTV 10 Unmodified _FLLDGFPRTV_ 0 0 0 nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2 nc|ENSG00000004455|P54819-6|AK2 nc|ENSG00000004455|P54819-6|AK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8245239257812 2 582.824224 1163.63389 0.9812 0.00057187 0.51471 0.00029998 1.4959 0.00087185 582.8243580755985 94.876 0.57792 88.701 88.426 89.004 -6.1757 83 32 3 0 0 0 0.010306 2 62909 62792;62909 110.55 34.792 1 21883000 12390 274 8529 8702 14248;14249 14249 0.058622914027409934 FLLDHGASL 9 Unmodified _FLLDHGASL_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7600402832031 2 486.761092 971.507631 NaN NaN NaN NaN NaN NaN NaN 58.66 1 58.169 57.669 58.669 -0.49079 0 0 0 0.023279 1 31902 31902 74.423 26.077 1 12391 6095 8530 8703 14250 14250 0.02073784897470432 FLLDHGASL 9 Unmodified _FLLDHGASL_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7612609863281 2 486.761092 971.507631 0.45087 0.00021947 -0.11438 -5.5678E-05 0.33649 0.00016379 486.7607956698176 65.319 0.44077 59.143 58.941 59.382 -6.1757 34 24 2 0 0 0 0.031062 1 42408 42408 54.774 14.816 1 12180000 12392 6095 8530 8703 14251 14251 0.02073784897470432 FLLDKKIGV 9 Unmodified _FLLDKKIGV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8265991210938 2 516.826235 1031.63792 0.67306 0.00034786 -0.026357 -1.3622E-05 0.6467 0.00033423 516.8260745459189 52.779 0.35894 52.715 52.542 52.901 -0.063423 54 17 4 0 0 0 0.014417 2 28559 28559;28661 69.105 32.978 1 65460000 12393 7455 8531 8704 14252;14253 14252 0.12336380896454102 FLLDKKIGV 9 Unmodified _FLLDKKIGV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8268432617188 2 516.826235 1031.63792 1.3977 0.00072237 -0.49485 -0.00025575 0.90285 0.00046662 516.82596228792 59.01 0.39808 52.935 52.702 53.1 -6.0745 56 21 3 0 0 0 0.036857 1 37837 37837 51.63 19.324 1 105210000 12394 7455 8531 8704 14254 14254 0.12336380896454102 FLLDKKIGV 9 Unmodified _FLLDKKIGV_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.826235 1031.63792 0.27877 0.00014408 1.5001 0.00077529 1.7789 0.00091937 516.8267257393734 53.132 0.16845 52.68 52.574 52.742 -0.45173 -0.096955 0.0016346 NaN 69.105 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1105200 12395 7455 8531 8704 0.12336380896454102 FLLDKPQDLSI 11 Unmodified _FLLDKPQDLSI_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8593139648438 2 644.861003 1287.70745 0.47784 0.00030814 -1.9474 -0.0012558 -1.4696 -0.0009477 644.8591236606096 72.737 0.19535 72.262 72.146 72.341 -0.47588 11 8 2 0 0 0 0.66428 1 39816 39816 7.609 0.88579 1 656330 12396 9187 8532 8705 14255 14255 0.07510795054577102 FLLDLHFTL 9 Unmodified _FLLDLHFTL_ 0 0 0 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 REV__nc|ENSG00000160753|Q9BVN2-2|RUSC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.816650390625 2 559.815867 1117.61718 1.1879 0.00066503 -0.43048 -0.00024099 0.75747 0.00042404 559.8156187646534 101.29 0.11614 95.115 95.046 95.163 -6.1757 13 6 3 0 0 0 0.038285 1 67948 67948 50.855 2.5092 1 55265000 + 12397 21564 8533 8706 14256 14256 0.06307790516802925 FLLDPEKYFRK 11 Unmodified _FLLDPEKYFRK_ 0 0 0 nc|ENSG00000174776|Q8IV35-2|CFAP337;nc|ENSG00000174776|Q8IV35-3|CFAP337;ENSG00000174776|ENST00000682715|WDR49 nc|ENSG00000174776|Q8IV35-2|CFAP337 nc|ENSG00000174776|Q8IV35-2|CFAP337 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 728.403564453125 2 728.403369 1454.79219 0.023093 1.6821E-05 -0.02805 -2.0432E-05 -0.0049575 -3.611E-06 728.4031578414244 83.822 0.24059 83.885 83.757 83.998 0.063171 20 9 3 0 0 0 0.37677 1 46386 46386 22.736 3.4793 1 23546000 12398 8454 8534 8707 14257 14257 0.08298165591145334 FLLDPVKGERL 11 Unmodified _FLLDPVKGERL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.0888977050781 3 429.587084 1285.73942 0.27216 0.00011692 0.60971 0.00026192 0.88187 0.00037884 429.58737246660735 58.933 0.29361 58.442 58.31 58.604 -0.49079 36 13 4 0 0 0 0.28597 1 32035 32035 18.34 8.5755 1 6265600 12399 16412 8535 8708 14258 14258 0.10798207528387138 FLLDPVKGERL 11 Unmodified _FLLDPVKGERL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.0887451171875 3 429.587084 1285.73942 0.70948 0.00030478 -0.17005 -7.3053E-05 0.53943 0.00023173 429.5871786320258 58.503 0.25436 58.442 58.313 58.568 -0.060719 35 12 4 0 0 0 0.24451 1 31851 31851 33.821 24.057 1 9509800 12400 16412 8535 8708 14259 14259 0.10798207528387138 FLLDPVKGERL 11 Unmodified _FLLDPVKGERL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.5870666503906 3 429.587084 1285.73942 0.58146 0.00024979 0.293 0.00012587 0.87446 0.00037566 429.5872733334043 82.337 0.72276 76.161 75.849 76.571 -6.1757 73 40 2 0 0 0 0.018218 3 54098 53975;54098;54235 42.862 21.991 1 15301000 12401 16412 8535 8708 14260;14261;14262 14261 0.10798207528387138 FLLDRKQKL 9 Unmodified _FLLDRKQKL_ 0 0 0 ENST00000310421.4_1_8:67577071-67577185:-|nuORF ENST00000310421.4_1_8:67577071-67577185:-|nuORF ENST00000310421.4_1_8:67577071-67577185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.5760803222656 3 387.576519 1159.70773 NaN NaN NaN NaN NaN NaN NaN 91.035 1 84.859 84.359 85.359 -6.1757 0 0 0 0.32622 1 60168 60168 23.79 2.1996 1 12402 11678 8536 8709 14263 14263 0.13426259565085275 FLLDTADVAL 10 Unmodified _FLLDTADVAL_ 0 0 0 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2957153320312 2 539.294965 1076.57538 0.30522 0.0001646 -0.47505 -0.00025619 -0.16983 -9.159E-05 539.2945694187385 90.391 0.27068 89.895 89.734 90.004 -0.49641 18 12 2 0 0 0 0.48834 1 49387 49387 16.942 5.302 1 922810 12403 3256 8537 8710 14264 14264 0.040151900376031335 FLLEKGYEV 9 Unmodified _FLLEKGYEV_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS;GMDS-VAPB|1|fusion;GMDS-VAPB|2|fusion nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2975463867188 2 549.297507 1096.58046 0.33131 0.00018199 1.1526 0.00063313 1.4839 0.00081512 549.2982968719999 57.111 0.27538 56.626 56.479 56.754 -0.48554 41 12 4 0 0 0 0.017075 1 30998 30998 66.457 16.524 1 22717000 12404 2911 8538 8711 14265 14265 0.03603493900232024 FLLEKPFSV 9 Unmodified _FLLEKPFSV_ 0 0 0 nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3 nc|ENSG00000185238|O60678-2|PRMT3 nc|ENSG00000185238|O60678-2|PRMT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3109130859375 2 540.310418 1078.60628 0.057113 3.0859E-05 0.57818 0.0003124 0.63529 0.00034326 540.3106563884902 72.517 0.34016 72.558 72.442 72.782 0.041725 28 15 2 0 0 0 0.032796 1 39954 39954 53.833 19.431 1 6172900 12405 9348 8539 8712 14266 14266 0.07012388142516102 FLLGKEVSL 9 Unmodified _FLLGKEVSL_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2966918945312 2 503.302593 1004.59063 0.76877 0.00038693 -4.3975 -0.0022133 -3.6287 -0.0018264 503.29957743643513 66.809 0.25632 66.827 66.772 67.028 0.018028 15 11 2 0 0 0 0.040683 1 36688 36688 49.554 3.8547 1 7706700 12406 9930 8540 8713 14267 14267 0.08852101625473097 FLLGPRLVLA 10 Unmodified _FLLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8558959960938 2 549.855327 1097.6961 0.081407 4.4762E-05 0.63195 0.00034748 0.71336 0.00039224 549.8555860539966 99.003 0.12581 92.827 92.752 92.878 -6.1757 13 7 2 0 0 0 0.0575 1 65790 65790 56.177 25.541 1 60851000 12407 7974 8541 8714 14268 14268 0.15116062541756037 FLLGSEIKL 9 Unmodified _FLLGSEIKL_ 0 0 0 nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B nc|ENSG00000133138|Q0IIM8-2|TBC1D8B nc|ENSG00000133138|Q0IIM8-2|TBC1D8B MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8142395019531 2 510.310418 1018.60628 0.98519 0.00050275 0.21637 0.00011042 1.2016 0.00061317 510.3102576336269 96.225 0.6588 90.05 89.63 90.289 -6.1757 101 39 5 0 0 0 0.28023 1 63535 63535 18.146 3.3081 1 853710000 12408 4496 8542 8715 14269 14269 0.09772388142516775 FLLHIQQQV 9 Unmodified _FLLHIQQQV_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.32470703125 2 563.324391 1124.63423 0.80909 0.00045578 0.46415 0.00026147 1.2732 0.00071725 563.3242852501603 59.094 0.32571 59.033 58.86 59.186 -0.060719 49 15 4 0 0 0 0.019979 2 32159 32159;32258 63.563 27.519 1 19258000 12409 2983 8543 8716 14270;14271 14270 0.0768971112258896 FLLHQKIAL 9 Unmodified _FLLHQKIAL_ 0 0 0 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5620727539062 3 361.56221 1081.6648 0.078571 2.8408E-05 0.45289 0.00016375 0.53146 0.00019215 361.5622706059 53.146 0.25872 53.082 52.961 53.219 -0.063423 30 12 3 0 0 0 0.34134 1 28832 28832 15.248 1.6336 1 4524000 12410 7800 8544 8717 14272 14272 0.1272348950765263 FLLKSCPLL 9 Carbamidomethyl (C) _FLLKSC(Carbamidomethyl (C))PLL_ FLLKSC(1)PLL FLLKSC(79)PLL 0 1 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.82177734375 2 545.820095 1089.62564 1.0782 0.00058848 1.5166 0.00082782 2.5948 0.0014163 545.8211070681799 90.543 0.80528 84.367 83.934 84.74 -6.1757 83 47 2 0 0 0 0.010611 2 59982 59828;59982 78.728 32.978 1 39079000 12411 5248 8545 8718 14273;14274 14274 538 0.08441021161775097 FLLLFLHFWYR 11 Unmodified _FLLLFLHFWYR_ 0 0 0 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.9330444335938 2 777.93464 1553.85473 NaN NaN NaN NaN NaN NaN NaN 83.896 1 83.959 83.459 84.459 0.063171 0 0 0 0.9385 1 46417 46417 3.5965 0.31518 1 12412 7157 8546 8719 14275 14275 0.0999535645000833 FLLLISKRL 9 Unmodified _FLLLISKRL_ 0 0 0 nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND nc|ENSG00000135902|Q07001-2|CHRND nc|ENSG00000135902|Q07001-2|CHRND MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2496948242188 3 368.249743 1101.7274 1.1617 0.00042781 -0.14252 -5.2483E-05 1.0192 0.00037533 368.2496991151067 99.102 0.098305 92.927 92.859 92.957 -6.1757 9 5 2 0 0 0 0.042911 1 65919 65919 43.772 0 1 17753000 12413 4752 8547 8720 14276 14276 0.18060635575852757 FLLLLAHES 9 Unmodified _FLLLLAHES_ 0 0 0 REV__ENSG00000185988|ENST00000454744|PLK5 REV__ENSG00000185988|ENST00000454744|PLK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.80078125 2 521.800217 1041.58588 -0.039644 -2.0686E-05 0.59173 0.00030876 0.55208 0.00028808 521.8005718620041 88.068 0.188 88.121 88.022 88.21 0.053352 10 7 2 0 0 0 0.087258 1 49030 49030 36.044 0 1 13896000 + 12414 23543 8548 8721 14277 14277 0.0667521748271156 FLLLLAHES 9 Unmodified _FLLLLAHES_ 0 0 0 REV__ENSG00000185988|ENST00000454744|PLK5 REV__ENSG00000185988|ENST00000454744|PLK5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.800217 1041.58588 -0.039644 -2.0686E-05 0.59173 0.00030876 0.55208 0.00028808 521.8005718620041 88.068 0.188 88.121 88.022 88.21 0.053352 -0.058346 -0.0014921 NaN 36.044 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 13896000 + 12415 23543 8548 8721 0.0667521748271156 FLLLLFFLF 9 Unmodified _FLLLLFFLF_ 0 0 0 ENST00000261254.7_1_12:4412550-4412766:+|nuORF ENST00000261254.7_1_12:4412550-4412766:+|nuORF ENST00000261254.7_1_12:4412550-4412766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8594360351562 2 586.859547 1171.70454 1.3437 0.00078859 -0.39327 -0.00023079 0.95047 0.00055779 586.8591017067333 71.16 0.23351 71.199 71.068 71.301 0.039024 21 9 3 0 0 0 0.25681 1 39172 39172 20.871 0 1 2925600 12416 11237 8549 8722 14278 14278 0.12555616458371333 FLLLPLLLLRR 11 Unmodified _FLLLPLLLLRR_ 0 0 0 REV__ENST00000495599.1_1_X:23685681-23689545:+|nuORF REV__ENST00000495599.1_1_X:23685681-23689545:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.3171081542969 3 456.314747 1365.92241 NaN NaN NaN NaN NaN NaN NaN 103.36 1 97.179 96.679 97.679 -6.1757 0 0 0 0.9428 1 69301 69301 0.50596 0.50596 1 + 12417 19371 8550 8723 14279 14279 0.2540880638082399 FLLMLPEAL 9 Unmodified _FLLMLPEAL_ 0 0 0 REV__ENST00000428417.5_1_1:15546673-15546847:+|nuORF REV__ENST00000428417.5_1_1:15546673-15546847:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8029174804688 2 523.801371 1045.58819 NaN NaN NaN NaN NaN NaN NaN 51.389 1 50.975 50.475 51.475 -0.41351 0 0 0 0.096036 1 27704 27704 44.407 8.3628 1 + 12418 26938 8551 8724 14280 14280 0.06721929896161782 FLLNKKLER 9 Unmodified _FLLNKKLER_ 0 0 0 ENSG00000142149|ENST00000270112|HUNK ENSG00000142149|ENST00000270112|HUNK ENSG00000142149|ENST00000270112|HUNK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5768127441406 3 387.576519 1159.70773 0.32828 0.00012723 0.3784 0.00014666 0.70668 0.00027389 387.5767622616668 59.11 0.20509 59.049 58.922 59.127 -0.060722 20 9 3 0 0 0 0.46162 1 32225 32225 9.544 0 1 4315000 12419 5392 8552 8725 14281 14281 0.13426259565085275 FLLNYSLDL 9 Unmodified _FLLNYSLDL_ 0 0 0 REV__ENSG00000174123|ENST00000308973|TLR10 REV__ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2994995117188 2 549.297507 1096.58046 0.22952 0.00012608 0.67727 0.00037202 0.90679 0.0004981 549.2981831959235 56.576 0.31381 56.576 56.45 56.763 0 30 13 3 0 0 0 0.013041 1 31451 31451 71.922 0 1 5630500 + 12420 22768 8553 8726 14282 14282 0.03603493900232024 FLLPAGWIL 9 Unmodified _FLLPAGWIL_ 0 0 0 ENSG00000176340|ENST00000314133|COX8A ENSG00000176340|ENST00000314133|COX8A ENSG00000176340|ENST00000314133|COX8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.310546875 2 515.310221 1028.60589 1.0158 0.00052344 0.12807 6.5994E-05 1.1438 0.00058943 515.3093940853767 102.41 0.079994 96.233 96.193 96.273 -6.1757 15 6 3 0 0 0 0.085487 1 68730 68730 36.466 8.2929 1 4029400 12421 8585 8554 8727 14283 14283 0.0927301321332834 FLLPHPGLKV 10 Unmodified _FLLPHPGLKV_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000198513|Q8WXF7-2|ATL1 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2338256835938 3 374.234093 1119.68045 0.25332 9.4801E-05 -0.41896 -0.00015679 -0.16564 -6.1986E-05 374.2337998196656 59.638 0.15605 59.585 59.499 59.655 -0.053062 10 7 2 0 0 0 0.5802 1 32531 32531 12.175 9.1795 1 3068900 12422 3470;10099 8555 8728 14284 14284 0.1253977602470968 FLLPILSQI 9 Unmodified _FLLPILSQI_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3297729492188 2 522.328611 1042.64267 0.99708 0.00052081 0.73119 0.00038192 1.7283 0.00090273 522.3290005784577 102.2 0.1327 96.027 95.939 96.072 -6.1757 13 5 3 0 0 0 0.008678 1 68592 68592 88.904 18.188 1 34767000 12423 10528 8556 8729 14285 14285 0.12305265039231017 FLLPLRIAL 9 Unmodified _FLLPLRIAL_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.353515625 2 528.35242 1054.69029 3.3625 0.0017766 -1.3908 -0.00073486 1.9716 0.0010417 528.3517554514104 99.577 0.10672 99.54 99.477 99.583 -0.036301 9 3 3 0 0 0 0.042911 1 55314 55314 48.346 14.243 1 6038100 12424 6601 8557 8730 14286 14286 0.16512964030061994 FLLPLRIAL 9 Unmodified _FLLPLRIAL_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.77587890625 2 528.35242 1054.69029 1.5839 0.00083685 -0.18542 -9.7965E-05 1.3985 0.00073888 528.3522036702695 100.93 0.1299 94.759 94.701 94.831 -6.1757 18 7 3 0 0 0 0.17718 1 67637 67637 20.454 4.6064 1 64317000 12425 6601 8557 8730 14287 14287 0.16512964030061994 FLLPNIERL 9 Unmodified _FLLPNIERL_ 0 0 0 REV__nc|ENSG00000140995|Q6ZN54-4|DEF8 REV__nc|ENSG00000140995|Q6ZN54-4|DEF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8345947265625 2 557.834591 1113.65463 0.37288 0.00020801 -1.306 -0.00072853 -0.93312 -0.00052053 557.8340747471515 80.202 1.0321 80.259 79.7 80.733 0.057587 73 46 2 0 0 0 0.024882 1 44376 44376 58.679 3.9053 1 31498000 + 12426 20511 8558 8731 14288 14288 0.10234881782434968 FLLPVLRR 8 Unmodified _FLLPVLRR_ 0 0 0 ENST00000450602.6_1_X:148622209-148627018:+|nuORF ENST00000450602.6_1_X:148622209-148627018:+|nuORF ENST00000450602.6_1_X:148622209-148627018:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.31640625 2 507.334562 1012.65457 NaN NaN NaN NaN NaN NaN NaN 104.49 1 98.313 97.813 98.813 -6.1757 0 0 0 0.97444 1 69972 69972 2.5775 0.51773 1 12427 13511 8559 8732 14289 14289 0.14874926573088487 FLLQDTVEL 9 Unmodified _FLLQDTVEL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2958374023438 2 539.294965 1076.57538 1.288 0.00069464 0.3277 0.00017673 1.6157 0.00087136 539.2952974351585 97.375 0.53934 91.199 90.845 91.384 -6.1757 75 30 3 0 0 0 0.10734 1 64464 64464 32.305 3.8186 1 38521000 12428 2711 8560 8733 14290 14290 0.04015190037625871 FLLSEPVAL 9 Unmodified _FLLSEPVAL_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1 ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7894287109375 2 494.789318 987.564084 0.58985 0.00029185 -0.47459 -0.00023482 0.11526 5.7029E-05 494.7890485868719 89.921 0.36171 89.419 89.277 89.639 -0.50172 41 19 3 0 0 0 0.16776 1 49235 49235 26.341 12.833 1 1335700 12429 10361 8561 8734 14291 14291 0.06980412734139918 FLLSEPVAL 9 Unmodified _FLLSEPVAL_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1 ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.790283203125 2 494.789318 987.564084 0.95998 0.00047499 -1.457 -0.0007209 -0.49699 -0.00024591 494.7885311261767 99.473 0.22456 93.297 93.174 93.399 -6.1757 22 14 2 0 0 0 0.068777 1 66280 66280 40.449 2.2974 1 36148000 12430 10361 8561 8734 14292 14292 0.06980412734139918 FLLSSQVGL 9 Unmodified _FLLSSQVGL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2 ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2797241210938 2 482.279118 962.543683 0.31725 0.000153 1.6013 0.00077227 1.9185 0.00092527 482.2796763938078 79.498 0.29932 79.553 79.445 79.744 0.054977 23 11 3 0 0 0 0.18465 1 43940 43940 24.674 6.5389 1 2016500 12431 6106 8562 8735 14293 14293 0.06091242074330694 FLLTAKQLI 9 Unmodified _FLLTAKQLI_ 0 0 0 nc|ENSG00000158022|Q969Q1-2|TRIM63;ENSG00000158022|ENST00000374272|TRIM63 nc|ENSG00000158022|Q969Q1-2|TRIM63 nc|ENSG00000158022|Q969Q1-2|TRIM63 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3131713867188 2 523.83406 1045.65357 0.57297 0.00030014 0.069631 3.6475E-05 0.6426 0.00033662 523.8340468149819 71.734 0.25101 71.773 71.642 71.893 0.039024 19 11 2 0 0 0 0.209 1 39451 39451 7.2892 0 1 1312100 12432 6560 8563 8736 14294 14294 0.13256667413520518 FLLVYCFTL 9 Unmodified _FLLVYCFTL_ 0 0 0 ENST00000353383.5_2_17:17714598-17714688:+|nuORF ENST00000353383.5_2_17:17714598-17714688:+|nuORF ENST00000353383.5_2_17:17714598-17714688:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8015747070312 2 559.801371 1117.58819 0.47855 0.00026789 -0.36126 -0.00020223 0.11729 6.566E-05 559.8012723623675 92.991 0.32381 86.816 86.608 86.932 -6.1757 33 20 2 0 0 0 0.095405 1 61449 61449 34.102 1.9855 1 18452000 12433 12055 8564 8737 14295 14295 0.03409929896156427 FLLWLQALQTN 11 Unmodified _FLLWLQALQTN_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS AL20221201_MKP_PDAC_01 4 673.6278076171875 2 673.876988 1345.73942 NaN NaN NaN NaN NaN NaN NaN 16.845 1 14.288 13.788 14.788 -2.557 0 0 0 0.94144 1 8758 8758 1.4819 0 1 12434 9669 8565 8738 14296 14296 0.08038207528352359 FLMCVLGF 8 Unmodified _FLMCVLGF_ 0 0 0 REV__ENST00000261497.8_1_17:20903134-20903176:-|nuORF REV__ENST00000261497.8_1_17:20903134-20903176:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2329406738281 2 465.23481 928.455067 NaN NaN NaN NaN NaN NaN NaN 16.997 1 16.998 16.498 17.498 0.0010548 0 0 0 0.97444 1 8419 8419 2.8892 2.0956 1 + 12435 24991 8566 8739 14297 14297 -0.01202212761336341 FLMDFIHQV 9 Oxidation (M) _FLM(Oxidation (M))DFIHQV_ FLM(1)DFIHQV FLM(79)DFIHQV 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2894287109375 2 583.289159 1164.56377 0.82141 0.00047912 -1.3162 -0.00076774 -0.49481 -0.00028862 583.2884532119281 68.007 0.22731 68.032 67.9 68.127 0.025146 23 10 3 0 0 0 0.010611 1 37345 37345 78.728 30.979 1 6566900 12436 1000 8567 8740 14298 14298 163 -0.0119333025738797 FLMDFIHQV 9 Unmodified _FLMDFIHQV_ 0 0 0 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2940063476562 2 575.291702 1148.56885 1.3406 0.00077122 0.48799 0.00028074 1.8286 0.001052 575.291158501285 98.418 0.17395 92.242 92.134 92.308 -6.1757 49 11 6 0 0 0 0.018061 1 65250 65250 81.89 31.957 1 57690000 12437 1000 8567 8741 14299 14299 0.0005097360524359829 FLMKQQSLL 9 Oxidation (M) _FLM(Oxidation (M))KQQSLL_ FLM(1)KQQSLL FLM(61)KQQSLL 0 0 1 ENSG00000135720|ENST00000258198|DYNC1LI2;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENST00000565532.5_1_16:66762088-66770076:-|nuORF ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3130493164062 2 562.312635 1122.61072 1.7851 0.0010038 -0.08885 -4.9962E-05 1.6963 0.00095383 562.3123686706456 46.727 0.38391 46.693 46.472 46.856 -0.033417 41 18 3 0 0 0 0.022193 1 25140 25140 61.357 17.499 1 4276900 12438 4734 8568 8742 14300 14300 858 0.0543152929376447 FLMLFAIYF 9 Unmodified _FLMLFAIYF_ 0 0 0 ENSG00000212124|ENST00000390673|TAS2R19 ENSG00000212124|ENST00000390673|TAS2R19 ENSG00000212124|ENST00000390673|TAS2R19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8772888183594 3 388.876918 1163.60893 1.1953 0.00046482 -0.35491 -0.00013802 0.84037 0.0003268 388.87675373281377 18.821 0.94656 16.2 16.014 16.96 -2.6215 144 75 4 0 0 0 0.52844 1 10171 10171 5.7319 0 1 35599000 12439 10411 8569 8743 14301 14301 0.03366520275835683 FLMMPHWEL 9 Unmodified _FLMMPHWEL_ 0 0 0 REV__ENST00000227451.3_1_11:58972969-58973137:+|nuORF REV__ENST00000227451.3_1_11:58972969-58973137:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 602.2894287109375 2 602.288105 1202.56166 NaN NaN NaN NaN NaN NaN NaN 82.992 1 76.817 76.317 77.317 -6.1757 0 0 0 0.57317 1 54547 54547 13.508 3.434 1 + 12440 24795 8570 8744 14302 14302 -0.03152082266819889 FLMRRTNVL 9 Unmodified _FLMRRTNVL_ 0 0 0 ENST00000522084.5_1_5:67576187-67576310:+|nuORF ENST00000522084.5_1_5:67576187-67576310:+|nuORF ENST00000522084.5_1_5:67576187-67576310:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2252197265625 3 383.890221 1148.64883 1.2893 0.00049495 -1.5066 -0.00057838 -0.21733 -8.3433E-05 383.88857701867335 39.31 0.54256 34.859 34.632 35.175 -4.4509 70 33 3 0 0 0 0.4887 1 23391 23391 8.1555 1.0538 1 17931000 12441 14751 8571 8745 14303 14303 0.08045459999107152 FLMTKLHFWRF 11 Unmodified _FLMTKLHFWRF_ 0 0 0 nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B nc|ENSG00000169402|B2RC85-2|RSPH10B2 nc|ENSG00000169402|B2RC85-2|RSPH10B2 MSMS AL20221201_MKP_PDAC_01 4 763.4091796875 2 763.410475 1524.8064 NaN NaN NaN NaN NaN NaN NaN 97.791 1 91.615 91.115 92.115 -6.1757 0 0 0 0.92234 1 64815 64815 6.2058 0.47393 1 12442 6362 8572 8746 14304 14304 0.06498539538438308 FLMVETTAY 9 Unmodified _FLMVETTAY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7587280273438 2 537.762443 1073.51033 -0.18221 -9.7984E-05 -0.38565 -0.00020739 -0.56786 -0.00030537 537.7622373231281 69.881 0.2496 69.402 69.223 69.472 -0.47903 23 10 3 0 0 0 0.25297 2 38186 38163;38186 19.439 4.8573 1 1448600 12443 3760 8573 8747 14305;14306 14306 -0.023481277599103123 FLMVMYFFF 9 Unmodified _FLMVMYFFF_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7994384765625 2 622.797774 1243.581 0.29091 0.00018118 -2.9701 -0.0018498 -2.6792 -0.0016686 622.7952187923686 78.484 0.28102 78.484 78.359 78.64 0 20 13 2 0 0 0 0.46577 1 43598 43598 9.3474 2.6243 1 616280 12444 7371 8574 8748 14307 14307 -0.031051259759351524 FLMVMYFFF 9 Unmodified _FLMVMYFFF_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.7960815429688 2 622.797774 1243.581 NaN NaN NaN NaN NaN NaN NaN 88.393 1 87.889 87.389 88.389 -0.50423 0 0 0 0.85737 1 48345 48345 0.6015 0.14316 1 12445 7371 8574 8748 14308 14308 -0.031051259759351524 FLMYTRYF 8 Unmodified _FLMYTRYF_ 0 0 0 REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3 REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.782958984375 2 570.78097 1139.54739 1.0512 0.00059998 1.2658 0.00072251 2.317 0.0013225 570.7826561138467 59.853 0.51316 53.738 53.587 54.1 -6.1147 54 28 3 0 0 0 0.65867 1 38466 38466 20.871 0 1 46661000 + 12446 20411 8575 8749 14309 14309 -0.01680411423467376 FLNCKCYMIF 10 Unmodified _FLNCKCYMIF_ 0 0 0 ENST00000447485.6_2_X:40457933-40458865:+|nuORF ENST00000447485.6_2_X:40457933-40458865:+|nuORF ENST00000447485.6_2_X:40457933-40458865:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8661499023438 3 427.865807 1280.57559 -0.42344 -0.00018118 -0.0099618 -4.2623E-06 -0.4334 -0.00018544 427.86609307104925 19.591 0.12601 19.591 19.533 19.659 0 38 20 3 0 0 0 0.70951 1 9804 9804 0.77653 0 1 1507900 12447 13480 8576 8750 14310 14310 -0.05347172830056479 FLNCKCYMIF 10 Unmodified _FLNCKCYMIF_ 0 0 0 ENST00000447485.6_2_X:40457933-40458865:+|nuORF ENST00000447485.6_2_X:40457933-40458865:+|nuORF ENST00000447485.6_2_X:40457933-40458865:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 427.865807 1280.57559 -0.42344 -0.00018118 -0.0099618 -4.2623E-06 -0.4334 -0.00018544 427.86609307104925 19.591 0.12601 19.591 19.533 19.659 0 0.063508 4.8459E-05 NaN 0.77653 38 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1507900 12448 13480 8576 8750 -0.05347172830056479 FLNDEVWNL 9 Unmodified _FLNDEVWNL_ 0 0 0 ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF;ENSG00000205758|ENST00000381554|CRYZL1 ENST00000452420.5_1_21:34968037-34971579:-|nuORF ENST00000452420.5_1_21:34968037-34971579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2815551757812 2 575.282389 1148.55022 0.62151 0.00035754 -0.72717 -0.00041833 -0.10566 -6.0786E-05 575.2818673887896 86.774 0.32762 86.271 86.115 86.443 -0.50318 18 12 2 0 0 0 0.48152 1 47457 47457 8.5933 1.8701 1 732040 12449 10381 8577 8751 14311 14311 -0.01810864764956932 FLNDQVTLL 9 Unmodified _FLNDQVTLL_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7982788085938 2 531.795132 1061.57571 0.79662 0.00042364 1.5913 0.00084624 2.3879 0.0012699 531.7959766289797 80.69 0.32483 80.197 80.055 80.38 -0.49247 19 13 2 0 0 0 0.16226 1 44175 44175 26.884 9.9414 1 963870 12450 2850 8578 8752 14312 14312 0.04738609757487211 FLNFGNMTIEY 11 Unmodified _FLNFGNMTIEY_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2147827148438 3 450.212918 1347.61692 1.009 0.00045428 1.6367 0.00073686 2.6457 0.0011911 450.21401304628915 65.116 0.3054 65.116 64.935 65.241 7.6294E-06 47 14 4 0 0 0 0.73114 1 35647 35647 1.3296 0.87513 1 9280200 + 12451 21641 8579 8753 14313 14313 -0.042979972653483856 FLNFPRFQFPG 11 Unmodified _FLNFPRFQFPG_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MSMS AL20221201_MKP_PDAC_01 4 457.2400512695312 3 457.239907 1368.69789 NaN NaN NaN NaN NaN NaN NaN 16.157 1 13.6 13.1 14.1 -2.557 0 0 0 0.93933 1 8350 8350 1.2148 0.70888 1 12452 1392 8580 8754 14314 14314 0.028290715596767768 FLNGEVIRL 9 Unmodified _FLNGEVIRL_ 0 0 0 ENST00000477706.1_1_X:53458354-53459024:-|nuORF;nc|ENSG00000072506|Q99714-2|HSD17B10;ENSG00000072506|ENST00000168216|HSD17B10 ENST00000477706.1_1_X:53458354-53459024:-|nuORF ENST00000477706.1_1_X:53458354-53459024:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.809814453125 2 530.811116 1059.60768 0.27713 0.00014711 -2.305 -0.0012235 -2.0278 -0.0010764 530.8096257769805 67.532 0.25365 67.55 67.414 67.668 0.018036 19 12 2 0 0 0 0.032796 1 37105 37105 53.833 7.8118 1 4094300 12453 1085 8581 8755 14315 14315 0.0802602223127451 FLNHGLPLN 9 Unmodified _FLNHGLPLN_ 0 0 0 ENSG00000183395|ENST00000329406|PMCH ENSG00000183395|ENST00000329406|PMCH ENSG00000183395|ENST00000329406|PMCH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7813720703125 2 512.782359 1023.55016 NaN NaN NaN NaN NaN NaN NaN 18.986 1 18.992 18.492 19.492 0.0060463 0 0 0 0.84737 1 9643 9643 1.8442 0 1 12454 9145 8582 8756 14316 14316 0.039331800256945826 FLNLLEPKL 9 Unmodified _FLNLLEPKL_ 0 0 0 REV__ENST00000608004.1_1_19:58817468-58823414:+|nuORF REV__ENST00000608004.1_1_19:58817468-58823414:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.768798828125 2 543.831517 1085.64848 0.8757 0.00047623 0.45512 0.00024751 1.3308 0.00072374 543.8318161222257 83.443 0.20767 77.267 77.096 77.304 -6.1757 12 10 2 0 0 0 0.1474 1 54785 54785 28.487 6.7402 1 6363300 + 12455 29321 8583 8757 14317 14317 0.10908363550902322 FLNMVCVKL 9 Carbamidomethyl (C),Oxidation (M) _FLNM(Oxidation (M))VC(Carbamidomethyl (C))VKL_ FLNMVC(1)VKL FLNM(1)VCVKL FLNMVC(68)VKL FLNM(68)VCVKL 0 1 1 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.300537109375 2 570.301213 1138.58787 0.31117 0.00017746 -3.2854 -0.0018736 -2.9742 -0.0016962 570.3003589049247 62.013 0.19401 61.98 61.888 62.082 -0.032787 24 9 3 0 0 0 0.015445 1 33866 33866 68.081 32.037 1 6332800 12456 4336 8584 8758 14318 14318 438 782 0.02412186904666669 FLNNLEVNM 9 Unmodified _FLNNLEVNM_ 0 0 0 ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF ENST00000433510.2_1_17:46713503-46713704:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2708740234375 2 547.270967 1092.52738 0.81832 0.00044785 0.32126 0.00017582 1.1396 0.00062366 547.2711498676225 80.2 0.44152 74.024 73.762 74.204 -6.1757 42 26 2 0 0 0 0.017075 1 52639 52639 85.357 45.399 1 15397000 12457 13293 8585 8759 14319 14319 -0.015182071540948527 FLNNQEYVL 9 Unmodified _FLNNQEYVL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2911376953125 2 570.290214 1138.56587 0.53558 0.00030543 0.8152 0.0004649 1.3508 0.00077034 570.2911395395449 67.173 0.2537 67.173 67.064 67.317 0 26 10 3 0 0 0 0.30562 1 37453 37453 16.942 7.5592 1 944210 12458 3108 8586 8760 14320 14320 0.0021342175209611014 FLNNQEYVL 9 Unmodified _FLNNQEYVL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2903442382812 2 570.290214 1138.56587 0.73421 0.00041871 -0.33189 -0.00018928 0.40232 0.00022944 570.2901173185809 67.68 0.31688 67.198 67.053 67.37 -0.48218 25 13 2 0 0 0 0.087258 1 36958 36958 36.044 27.451 1 5176000 12459 3108 8586 8760 14321 14321 0.0021342175209611014 FLNPCPGP 8 Unmodified _FLNPCPGP_ 0 0 0 ENST00000518820.1_1_8:143560496-143561060:+|nuORF ENST00000518820.1_1_8:143560496-143561060:+|nuORF ENST00000518820.1_1_8:143560496-143561060:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.7052307128906 2 422.704731 843.39491 NaN NaN NaN NaN NaN NaN NaN 44.885 1 40.033 39.533 40.533 -4.852 0 0 0 0.93066 1 27456 27456 14.582 0 1 12460 14695 8587 8761 14322 14322 -0.033051871002157895 FLNQEFVVL 9 Unmodified _FLNQEFVVL_ 0 0 0 ENST00000495039.1_1_7:92888888-92902105:+|nuORF ENST00000495039.1_1_7:92888888-92902105:+|nuORF ENST00000495039.1_1_7:92888888-92902105:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8056640625 2 554.8055 1107.59645 0.39511 0.00021921 1.4552 0.00080737 1.8503 0.0010266 554.8059749591147 75.308 0.32715 75.354 75.165 75.492 0.045959 44 15 4 0 0 0 0.05447 1 41501 41501 43.858 7.3521 1 4871300 12461 14345 8588 8762 14323 14323 0.04695200137143729 FLNRETRWWNI 11 Unmodified _FLNRETRWWNI_ 0 0 0 REV__ENST00000215570.7_1_19:2426444-2426798:-|nuORF REV__ENST00000215570.7_1_19:2426444-2426798:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.267333984375 3 512.268637 1533.78408 0.25496 0.00013061 -2.1073 -0.0010795 -1.8524 -0.00094891 512.267019341303 99.062 0.098793 92.886 92.824 92.923 -6.1757 12 5 3 0 0 0 0.72981 1 65888 65888 1.4551 0.12547 1 23827000 + 12462 24730 8589 8763 14324 14324 0.03854031394416779 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.78271484375 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 42.431 1 42.125 41.625 42.625 -0.30682 0 0 0 0.059498 1 22538 22538 53.833 3.8998 1 12463 1652 8590 8764 14325 14325 0.011205549548776617 FLNSEIHQV 9 Unmodified _FLNSEIHQV_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7819213867188 2 543.782556 1085.55056 0.49396 0.0002686 0.50892 0.00027674 1.0029 0.00054535 543.7825935134431 48.077 0.33019 42.843 42.657 42.988 -5.2339 32 19 2 0 0 0 0.0059585 1 29870 29870 114.65 46.568 1 16407000 12464 1652 8590 8764 14326 14326 0.011205549548776617 FLNVNCEHI 9 Carbamidomethyl (C) _FLNVNC(Carbamidomethyl (C))EHI_ FLNVNC(1)EHI FLNVNC(50)EHI 0 1 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2734375 2 573.274041 1144.53353 1.1811 0.00067711 -1.0687 -0.00061266 0.11243 6.4453E-05 573.273522012094 54.402 0.18865 48.537 48.419 48.607 -5.8653 19 11 2 0 0 0 0.039985 1 34475 34475 49.933 20.851 1 9179500 12465 2229 8591 8765 14327 14327 221 -0.03295688922571571 FLPEAPAEL 9 Unmodified _FLPEAPAEL_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.763916015625 2 493.7633 985.512048 0.2796 0.00013806 2.0743 0.0010242 2.3539 0.0011623 493.7640062913905 68.46 0.5202 68.46 68.266 68.786 0 35 23 2 0 0 0 0.39863 2 38111 38111;38217 12.532 5.2423 1 1190300 12466 13944 8592 8766 14328;14329 14328 0.0187124932037932 FLPEAPAEL 9 Unmodified _FLPEAPAEL_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7637023925781 2 493.7633 985.512048 0.72038 0.0003557 -0.09672 -4.7757E-05 0.62366 0.00030794 493.7635500627329 76.246 0.39589 70.07 69.856 70.252 -6.1757 35 21 2 0 0 0 0.10734 2 49926 49802;49926 32.305 11.852 1 13344000 12467 13944 8592 8766 14330;14331 14331 0.0187124932037932 FLPEECPC 8 Unmodified _FLPEECPC_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 937.3795776367188 1 937.379402 936.372125 0.60809 0.00057001 -1.1907 -0.0011161 -0.58261 -0.00054612 937.3779360079698 102 0.12 95.822 95.757 95.877 -6.1757 8 5 2 0 0 0 0.41521 1 68467 68467 42.968 4.8168 1 7431200 12468 9633 8593 8767 14332 14332 -0.0986057428000322 FLPFPLPLF 9 Unmodified _FLPFPLPLF_ 0 0 0 ENSG00000139180|ENST00000266544|NDUFA9;ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF ENSG00000139180|ENST00000266544|NDUFA9 ENSG00000139180|ENST00000266544|NDUFA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8212280273438 2 545.820421 1089.62629 1.4359 0.00078375 -0.60267 -0.00032895 0.83324 0.0004548 545.819939255705 103.06 0.073975 96.886 96.846 96.92 -6.1757 64 19 4 0 0 0 0.016115 1 69117 69117 67.413 11.365 1 44060000 12469 5132 8594 8768 14333 14333 0.08506183873123518 FLPHSSLFL 9 Unmodified _FLPHSSLFL_ 0 0 0 ENST00000162391.7_1_12:8205594-8205657:+|nuORF ENST00000162391.7_1_12:8205594-8205657:+|nuORF ENST00000162391.7_1_12:8205594-8205657:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.7731323242188 2 530.794935 1059.57532 0.56467 0.00029972 0.9033 0.00047947 1.468 0.00077919 530.7953256962096 99.607 0.15937 93.432 93.365 93.525 -6.1757 21 9 3 0 0 0 0.13712 1 66367 66367 30.225 1.738 1 65215000 12470 10976 8595 8769 14334 14334 0.047912348282807216 FLPKTVKVI 9 Unmodified _FLPKTVKVI_ 0 0 0 ENST00000205636.3_1_3:32524601-32524697:-|nuORF ENST00000205636.3_1_3:32524601-32524697:-|nuORF ENST00000205636.3_1_3:32524601-32524697:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8460083007812 2 522.844428 1043.6743 1.417 0.00074087 -0.78251 -0.00040913 0.63448 0.00033173 522.8440283186898 96.532 0.27077 90.357 90.22 90.491 -6.1757 36 15 3 0 0 0 0.047196 1 63936 63936 46.021 4.1813 1 74677000 12471 10991 8596 8770 14335 14335 0.15421257793173027 FLPLDFLLF 9 Unmodified _FLPLDFLLF_ 0 0 0 ENST00000488747.5_1_1:65895684-65897486:+|nuORF;ENST00000484243.1_1_1:65895684-65895735:+|nuORF ENST00000488747.5_1_1:65895684-65897486:+|nuORF ENST00000488747.5_1_1:65895684-65897486:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.824951171875 2 562.823161 1123.63177 0.64518 0.00036312 -3.7717 -0.0021228 -3.1266 -0.0017597 562.8227013232112 75.566 0.17334 75.614 75.494 75.667 0.047943 13 7 2 0 0 0 0.28047 1 41685 41685 18.135 1.0221 1 1193300 12472 14150 8597 8771 14336 14336 0.07489862664942848 FLPLSFLFF 9 Unmodified _FLPLSFLFF_ 0 0 0 ENST00000535572.5_1_12:1018313-1018520:+|nuORF ENST00000535572.5_1_12:1018313-1018520:+|nuORF ENST00000535572.5_1_12:1018313-1018520:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.28955078125 2 565.817879 1129.6212 1.3327 0.00075404 0.18759 0.00010614 1.5202 0.00086018 565.8178724427619 63.773 0.37742 57.597 57.375 57.752 -6.1757 33 20 2 0 0 0 0.18118 1 41261 41261 18.135 0 1 14028000 12473 14973 8598 8772 14337 14337 0.06157880010528061 FLPPNRYIF 9 Unmodified _FLPPNRYIF_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.820068359375 2 583.821484 1165.62842 NaN NaN NaN NaN NaN NaN NaN 68.907 1 68.932 68.432 69.432 0.025146 0 0 0 0.23581 1 37862 37862 28.487 10.352 1 12474 16078 8599 8773 14338 14338 0.05222612610918986 FLPQKFFFL 9 Unmodified _FLPQKFFFL_ 0 0 0 REV__ENST00000468005.1_1_7:23455823-23509786:-|nuORF REV__ENST00000468005.1_1_7:23455823-23509786:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.306396484375 2 593.836603 1185.65865 -0.15391 -9.1398E-05 1.6415 0.00097479 1.4876 0.00088339 593.8374560685226 55.446 0.19759 55.377 55.218 55.415 -0.068741 19 9 3 0 0 0 0.21367 1 30120 30120 4.756 0.81161 1 2451500 + 12475 27443 8600 8774 14339 14339 0.07324971276125325 FLPQKIIYL 9 Unmodified _FLPQKIIYL_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000560592.5_1_14:24614852-24615790:-|nuORF;ENST00000559493.5_1_14:24614434-24615772:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.850830078125 2 567.84971 1133.68487 1.2148 0.00068983 -0.4015 -0.00022799 0.81331 0.00046184 567.849954494729 95.135 0.23691 88.959 88.803 89.04 -6.1757 18 12 2 0 0 0 0.087258 1 63004 63004 36.044 15.591 1 5237700 12476 1890 8601 8775 14340 14340 0.12337240447595832 FLPRILNGEVL 11 Unmodified _FLPRILNGEVL_ 0 0 0 ENSG00000160207|ENST00000291560|HSF2BP ENSG00000160207|ENST00000291560|HSF2BP ENSG00000160207|ENST00000291560|HSF2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.880859375 2 635.87953 1269.74451 1.2298 0.00078198 1.7517 0.0011139 2.9814 0.0018958 635.8801019161024 81.307 0.31688 81.367 81.19 81.507 0.059929 19 11 2 0 0 0 0.53952 1 44983 44983 14.405 0.49933 1 3160900 12477 6699 8602 8776 14341 14341 0.12042511390995969 FLPRKFPSL 9 Unmodified _FLPRKFPSL_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8899230957031 3 368.890327 1103.64915 0.45868 0.0001692 -0.12822 -4.7298E-05 0.33046 0.00012191 368.89017035870216 52.853 0.27613 52.79 52.624 52.901 -0.063419 37 13 4 0 0 0 0.06294 1 28616 28616 38.615 19.253 1 7794300 12478 10837 8603 8777 14342 14342 0.10147202990606274 FLPRKFPSL 9 Unmodified _FLPRKFPSL_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8909606933594 3 368.890327 1103.64915 1.3594 0.00050145 -0.27013 -9.9647E-05 1.0892 0.00040181 369.22451152997445 80.831 0.61418 74.655 74.278 74.892 -6.1757 53 33 2 0 0 0 0.07087 2 53023 53023;53153 30.703 11.341 1 18658000 12479 10837 8603 8777 14343;14344 14343 0.10147202990606274 FLPSEFGW 8 Unmodified _FLPSEFGW_ 0 0 0 REV__ENSG00000184459|ENST00000300399|BPIFC REV__ENSG00000184459|ENST00000300399|BPIFC MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.4659423828125 1 982.466895 981.459619 1.1397 0.0011197 -1.7766 -0.0017454 -0.63688 -0.00062571 982.4651103630159 101.17 0.12318 94.997 94.923 95.046 -6.1757 12 7 2 0 0 0 0.44122 1 67821 67821 40.449 8.3316 1 47536000 + 12480 23421 8604 8778 14345 14345 -0.031852890225763986 FLPSKEPAF 9 Unmodified _FLPSKEPAF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2821655273438 2 518.279118 1034.54368 NaN NaN NaN NaN NaN NaN NaN 91.447 1 91.484 90.984 91.984 0.036499 0 0 0 0.13852 1 50865 50865 38.151 11.268 1 12481 748 8605 8779 14346 14346 0.027792420743026014 FLPTICHP 8 Unmodified _FLPTICHP_ 0 0 0 ENST00000467617.1_1_22:41363658-41368489:+|nuORF ENST00000467617.1_1_22:41363658-41368489:+|nuORF ENST00000467617.1_1_22:41363658-41368489:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.240234375 2 464.241481 926.468409 0.47207 0.00021915 -2.9663 -0.0013771 -2.4942 -0.0011579 464.24013626913745 40.359 0.14834 40.364 40.276 40.424 0.0050545 11 6 2 0 0 0 0.57408 1 21522 21522 28.173 5.7206 1 1079200 12482 13785 8606 8780 14347 14347 0.002233613422504277 FLPTRAPLR 9 Unmodified _FLPTRAPLR_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5539245605469 3 357.553826 1069.63965 1.1742 0.00041985 -0.035848 -1.2817E-05 1.1384 0.00040704 357.55365830202845 46.637 0.4436 46.603 46.39 46.834 -0.033417 69 21 4 0 0 0 0.48396 1 25041 25041 8.4443 0.83535 1 33698000 + 12483 17844 8607 8781 14348 14348 0.10761434705068496 FLPTRAPLR 9 Unmodified _FLPTRAPLR_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MSMS AL20221201_MKP_PDAC_01 4 357.5543518066406 3 357.553826 1069.63965 NaN NaN NaN NaN NaN NaN NaN 51.857 1 46.122 45.622 46.622 -5.7345 0 0 0 0.38798 1 32671 32671 20.581 2.2078 1 + 12484 17844 8607 8781 14349 14349 0.10761434705068496 FLPTRAPLR 9 Unmodified _FLPTRAPLR_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.688720703125 3 357.553826 1069.63965 1.2818 0.00045833 -0.044616 -1.5953E-05 1.2372 0.00044237 357.88812028255376 66.456 0.34498 60.281 60.096 60.441 -6.1757 27 18 2 0 0 0 0.21404 1 43203 43203 3.3196 0 1 7715400 + 12485 17844 8607 8781 14350 14350 0.10761434705068496 FLQDHCPVV 9 Carbamidomethyl (C) _FLQDHC(Carbamidomethyl (C))PVV_ FLQDHC(1)PVV FLQDHC(48)PVV 0 1 0 ENSG00000158201|ENST00000289119|ABHD3;ENST00000577928.5_1_18:19263865-19284533:-|nuORF;ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MSMS AL20221201_MKP_PDAC_01 4 557.7731323242188 2 557.771134 1113.52771 NaN NaN NaN NaN NaN NaN NaN 48.424 1 43.19 42.69 43.69 -5.2339 0 0 0 0.083082 1 30160 30160 47.749 17.112 1 12486 6572 8608 8782 14351 14351 646 -0.0245078743423619 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.781494140625 2 551.780013 1101.54547 -0.37555 -0.00020722 -0.5384 -0.00029708 -0.91395 -0.0005043 551.7793539100554 36.44 0.36096 36.19 36.066 36.427 -0.2497 32 16 3 0 0 0 0.033587 1 19095 19095 53.404 17.36 1 9327600 12487 490 8609 8783 14352 14352 -0.0012374890770843194 FLQEHNTTL 9 Unmodified _FLQEHNTTL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7803955078125 2 551.780013 1101.54547 0.81221 0.00044816 -0.62616 -0.0003455 0.18605 0.00010266 551.7796400366619 41.553 0.41374 36.945 36.788 37.202 -4.6079 66 27 3 0 0 0 0.0093064 2 24908 24908;25044 83.429 43.471 1 46405000 12488 490 8609 8783 14353;14354 14353 -0.0012374890770843194 FLQEKSPAV 9 Unmodified _FLQEKSPAV_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.8001098632812 2 509.782025 1017.5495 -0.37932 -0.00019337 -1.6906 -0.00086186 -2.07 -0.0010552 509.7809375943812 34.236 0.13598 34.236 34.19 34.326 0 10 6 2 0 0 0 0.16895 1 18029 18029 24.021 11.489 1 2191600 12489 5528 8610 8784 14355 14355 0.04142340585997317 FLQEKSPAV 9 Unmodified _FLQEKSPAV_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MSMS AL20221201_MKP_PDAC_01 4 509.7825927734375 2 509.782025 1017.5495 NaN NaN NaN NaN NaN NaN NaN 39.431 1 34.98 34.48 35.48 -4.4509 0 0 0 0.046065 1 23400 23400 59.368 8.5134 1 12490 5528 8610 8784 14356 14356 0.04142340585997317 FLQEQLVEL 9 Unmodified _FLQEQLVEL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.8094482421875 2 559.808239 1117.60193 0.38189 0.00021379 0.25024 0.00014009 0.63214 0.00035388 559.8079004916542 79.436 0.35676 79.436 79.256 79.613 0 26 13 3 0 0 0 0.45045 1 44156 44156 10.074 2.7847 1 724120 12491 5632 8611 8785 14357 14357 0.047828789289496854 FLQERRWI 8 Unmodified _FLQERRWI_ 0 0 0 ENST00000371442.3_1_X:119005392-119005635:-|nuORF ENST00000371442.3_1_X:119005392-119005635:-|nuORF ENST00000371442.3_1_X:119005392-119005635:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.322509765625 2 574.322183 1146.62981 0.72048 0.00041379 0.25827 0.00014833 0.97876 0.00056212 574.322497917818 52.167 0.21984 51.733 51.631 51.851 -0.43367 18 10 2 0 0 0 0.54555 1 28174 28174 38.151 9.0696 1 2557600 12492 12359 8612 8786 14358 14358 0.06236246699700132 FLQFNNKDKS 10 Unmodified _FLQFNNKDKS_ 0 0 0 ENST00000381962.3_1_20:627564-627768:-|nuORF ENST00000381962.3_1_20:627564-627768:-|nuORF ENST00000381962.3_1_20:627564-627768:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2151794433594 3 414.215539 1239.62479 0.38504 0.00015949 0.27622 0.00011441 0.66125 0.0002739 414.21535413262734 15.729 0.22433 13.202 13.065 13.289 -2.5273 91 53 2 0 0 0 0.68074 1 8124 8124 5.0475 0.3316 1 3433900 12493 12622 8613 8787 14359 14359 0.014558980464244087 FLQKVFVMP 9 Unmodified _FLQKVFVMP_ 0 0 0 ENST00000584498.5_1_17:62226331-62226475:-|nuORF ENST00000584498.5_1_17:62226331-62226475:-|nuORF ENST00000584498.5_1_17:62226331-62226475:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.9063110351562 3 370.212301 1107.61507 -0.26886 -9.9535E-05 1.4475 0.00053589 1.1787 0.00043635 370.2123092714595 36.44 0.12239 36.462 36.372 36.494 0.021545 11 5 3 0 0 0 0.21798 1 19265 19265 1.1933 0.84271 1 5807900 12494 15597 8614 8788 14360 14360 0.0655703850734426 FLQLDFLYF 9 Unmodified _FLQLDFLYF_ 0 0 0 ENST00000355773.5_1_6:74325102-74331662:-|nuORF ENST00000355773.5_1_6:74325102-74331662:-|nuORF ENST00000355773.5_1_6:74325102-74331662:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3129272460938 2 603.3157 1204.61685 NaN NaN NaN NaN NaN NaN NaN 68.336 1 68.336 67.836 68.836 0 0 0 0 0.7818 1 38095 38095 6.7232 0.51738 1 12495 12083 8615 8789 14361 14361 0.022723707969362295 FLQMLLENI 9 Unmodified _FLQMLLENI_ 0 0 0 nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8132934570312 2 560.807185 1119.59982 0.76477 0.00042889 3.5467 0.001989 4.3115 0.0024179 560.8119799142703 52.031 0.27535 51.973 51.772 52.047 -0.058918 33 12 3 0 0 0 0.28047 1 28196 28196 18.135 3.2967 1 3970800 12496 5894 8616 8790 14362 14362 0.04480126919497707 FLQNLIEPQ 9 Unmodified _FLQNLIEPQ_ 0 0 0 REV__ENST00000484514.1_1_3:78734943-78737853:-|nuORF REV__ENST00000484514.1_1_3:78734943-78737853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.797119140625 2 551.300581 1100.58661 0.29789 0.00016423 -0.43509 -0.00023987 -0.1372 -7.564E-05 551.3027662632402 61.765 0.29716 61.732 61.572 61.869 -0.032787 30 14 3 0 0 0 0.23158 1 33785 33785 20.454 3.3407 1 5108400 + 12497 27762 8617 8791 14363 14363 0.04034012131751297 FLQPELVKL 9 Unmodified _FLQPELVKL_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MSMS AL20221201_MKP_PDAC_01 4 543.8313598632812 2 543.831517 1085.64848 NaN NaN NaN NaN NaN NaN NaN 83.765 1 77.59 77.09 78.09 -6.1757 0 0 0 0.044471 1 55091 55091 60.074 16.216 1 12498 989 8618 8792 14364 14364 0.10908363550902322 FLQPNRQFL 9 Unmodified _FLQPNRQFL_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8214111328125 2 581.822015 1161.62948 NaN NaN NaN NaN NaN NaN NaN 56.229 1 56.16 55.66 56.66 -0.068737 0 0 0 0.025979 1 30577 30577 71.134 29.039 1 12499 2781 8619 8793 14365 14365 0.05512826979838792 FLQWILETRAY 11 Unmodified _FLQWILETRAY_ 0 0 0 nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1 nc|ENSG00000163554|P02549-2|SPTA1 nc|ENSG00000163554|P02549-2|SPTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.3890380859375 2 720.387719 1438.76089 0.43487 0.00031327 0.73563 0.00052994 1.1705 0.00084321 720.3881355801448 74.173 0.54314 74.217 74.028 74.571 0.043983 73 23 5 0 0 0 0.48742 2 40829 40829;40926 27.629 14.586 1 32716000 12500 7017 8620 8794 14366;14367 14366 0.059055925570874024 FLRAQKYT 8 Unmodified _FLRAQKYT_ 0 0 0 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7621459960938 2 513.790184 1025.56581 0.33837 0.00017385 -0.25024 -0.00012857 0.08813 4.528E-05 513.7896804370029 77.134 0.95399 77.185 76.698 77.652 0.05011 50 39 2 0 0 0 8.7369 1 42648 42648 9.3474 1.4373 1 1337700 12501 10585 8621 8795 14368 14368 0.05405466542742943 FLRCLMDL 8 Unmodified _FLRCLMDL_ 0 0 0 nc|ENSG00000077254|Q8TEY7-3|USP33;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.760986328125 2 505.761723 1009.50889 -0.24016 -0.00012146 -0.94988 -0.00048041 -1.19 -0.00060188 505.7621680018484 69.019 0.25355 68.538 68.443 68.697 -0.48071 18 10 2 0 0 0 0.80975 1 37780 37780 0.79363 0 1 580160 12502 1211 8622 8796 14369 14369 0.0045195967035169815 FLRDNPAY 8 Unmodified _FLRDNPAY_ 0 0 0 ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2499694824219 2 498.250892 994.48723 -0.21051 -0.00010489 -0.040939 -2.0398E-05 -0.25145 -0.00012529 498.25085592895465 25.157 0.33546 25.157 25.01 25.346 0 50 17 4 0 0 0 0.48669 1 12835 12835 36.044 1.9418 1 29010000 12503 6777 8623 8797 14370 14370 -0.010233857623575204 FLRDNPAY 8 Unmodified _FLRDNPAY_ 0 0 0 ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2516174316406 2 498.250892 994.48723 0.82615 0.00041163 0.38559 0.00019212 1.2117 0.00060375 498.25099846681655 28.585 0.41719 25.437 25.193 25.61 -3.1482 56 21 3 0 0 0 0.40035 2 15970 15858;15970 44.407 10.305 1 106600000 12504 6777 8623 8797 14371;14372 14372 -0.010233857623575204 FLRENECVSC 10 Unmodified _FLRENECVSC_ 0 0 0 ENST00000537842.5_1_12:6439038-6442545:-|nuORF;nc|ENSG00000067182|P19438-5|TNFRSF1A;nc|ENSG00000067182|P19438-4|TNFRSF1A;nc|ENSG00000067182|P19438-2|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A ENST00000537842.5_1_12:6439038-6442545:-|nuORF ENST00000537842.5_1_12:6439038-6442545:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5105895996094 3 400.510969 1198.51108 -0.45144 -0.00018081 -0.38197 -0.00015298 -0.83341 -0.00033379 400.5110969555346 29.109 0.29927 29.109 28.923 29.222 0 36 14 4 0 0 0 0.67755 1 15050 15050 5.4027 1.2861 1 6447600 12505 952 8624 8798 14373 14373 -0.08023656382488298 FLRGPGADF 9 Unmodified _FLRGPGADF_ 0 0 0 ENST00000563518.5_1_15:41799618-41799735:-|nuORF ENST00000563518.5_1_15:41799618-41799735:-|nuORF ENST00000563518.5_1_15:41799618-41799735:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2547607421875 2 490.253434 978.492316 1.3563 0.00066492 0.47019 0.00023051 1.8265 0.00089543 490.2536405335534 46.475 0.22147 46.442 46.307 46.529 -0.033417 17 10 2 0 0 0 0.25681 1 25014 25014 19.257 1.122 1 2331900 12506 15365 8625 8799 14374 14374 0.002209181002740479 FLRGRYRL 8 Unmodified _FLRGRYRL_ 0 0 0 ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5 ENSG00000183196|ENST00000332272|CHST6 ENSG00000183196|ENST00000332272|CHST6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8236083984375 2 540.824892 1079.63523 NaN NaN NaN NaN NaN NaN NaN 101.65 1 101.61 101.11 102.11 -0.045853 0 0 0 0.97444 1 56474 56474 2.8892 0 1 12507 9126 8626 8800 14375 14375 0.09859970282150243 FLRKFYNKF 9 Unmodified _FLRKFYNKF_ 0 0 0 ENST00000602524.1_1_10:22614887-22615412:+|nuORF ENST00000602524.1_1_10:22614887-22615412:+|nuORF ENST00000602524.1_1_10:22614887-22615412:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5708923339844 3 421.572998 1261.69716 1.0585 0.00044624 -2.0069 -0.00084607 -0.94843 -0.00039983 421.57193411386373 98.571 0.16989 92.395 92.308 92.478 -6.1757 15 12 2 0 0 0 0.38785 1 65395 65395 13.042 2.243 1 17441000 12508 15819 8627 8801 14376 14376 0.0767827691063303 FLRKLRIHLT 10 Unmodified _FLRKLRIHLT_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6;nc|ENSG00000186976|Q5THR3-3|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.915771484375 2 648.916781 1295.81901 1.5046 0.00097633 -1.4794 -0.00095999 0.025184 1.6342E-05 648.9151168775597 104.6 0.10012 98.426 98.376 98.476 -6.1757 7 4 2 0 0 0 0.72247 1 70057 70057 0.40072 0 1 12011000 12509 9528 8628 8802 14377 14377 0.18293318993005414 FLRKRMDL 8 Unmodified _FLRKRMDL_ 0 0 0 ENST00000494757.5_1_17:38434473-38434674:+|nuORF ENST00000494757.5_1_17:38434473-38434674:+|nuORF ENST00000494757.5_1_17:38434473-38434674:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.5328063964844 3 360.211183 1077.61172 NaN NaN NaN NaN NaN NaN NaN 42.521 1 37.836 37.336 38.336 -4.6846 0 0 0 0.97444 1 25698 25698 3.9444 0.62475 1 12510 14340 8629 8803 14378 14378 0.07601788453325753 FLRRHLCLKTK 11 Unmodified _FLRRHLCLKTK_ 0 0 0 REV__ENST00000430799.7_2_1:27107243-27107537:+|nuORF REV__ENST00000430799.7_2_1:27107243-27107537:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.9268188476562 2 707.926823 1413.83909 NaN NaN NaN NaN NaN NaN NaN 98.448 1 98.255 97.755 98.755 -0.19321 0 0 0 0.9435 1 53764 53764 0 0 1 + 12511 26969 8630 8804 14379 14379 0.1487274666128542 FLRRYEEFMVQ 11 Unmodified _FLRRYEEFMVQ_ 0 0 0 nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6 nc|ENSG00000172782|Q8N9I5-2|FADS6 nc|ENSG00000172782|Q8N9I5-2|FADS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.5906066894531 3 506.5905 1516.74967 -0.21826 -0.00011057 0.18691 9.4687E-05 -0.031347 -1.588E-05 506.5906240718482 25.724 0.33654 22.773 22.557 22.894 -2.9511 37 19 2 0 0 0 0.71938 1 14043 14043 2.4348 0 1 36194000 12512 8255 8631 8805 14380 14380 0.011964471912733643 FLRWHEERPQW 11 Unmodified _FLRWHEERPQW_ 0 0 0 REV__ENST00000403433.5_2_1:153606765-153609098:+|nuORF REV__ENST00000403433.5_2_1:153606765-153609098:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 792.3965454101562 2 792.396941 1582.77933 NaN NaN NaN NaN NaN NaN NaN 89.741 1 89.784 89.284 90.284 0.042175 0 0 0 0.94301 1 49920 49920 0.35063 0 1 + 12513 26628 8632 8806 14381 14381 0.011251472516278227 FLSACFFSSAV 11 Unmodified _FLSACFFSSAV_ 0 0 0 REV__ENSG00000147475|ENST00000519638|ERLIN2 REV__ENSG00000147475|ENST00000519638|ERLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7838745117188 2 589.781167 1177.54778 0.054315 3.2034E-05 2.7728 0.0016354 2.8271 0.0016674 589.783004964458 55.393 0.23791 55.324 55.158 55.395 -0.068737 27 11 3 0 0 0 0.63851 1 30069 30069 9.3831 0.78985 1 2949600 + 12514 20892 8633 8807 14382 14382 -0.033890364942863016 FLSAIVSSV 9 Unmodified _FLSAIVSSV_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 922.52783203125 1 922.52441 921.517133 0.50061 0.00046182 -0.38225 -0.00035263 0.11836 0.00010919 922.5244751722975 73.38 0.11002 73.424 73.384 73.494 0.043983 6 4 2 0 0 0 0.48152 1 40469 40469 8.5933 0 1 803030 12515 5256 8634 8808 14383 14383 0.053235531830068794 FLSEAALEENP 11 Unmodified _FLSEAALEENP_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.533935546875 3 407.199554 1218.57683 0.33601 0.00013682 0.18126 7.3808E-05 0.51726 0.00021063 407.1998749446391 58.027 0.22903 57.537 57.43 57.659 -0.48974 36 10 4 0 0 0 0.66968 1 31515 31515 3.5927 1.8504 1 8232000 12516 1576 8635 8809 14384 14384 -0.023712206642812816 FLSEEKLHY 9 Unmodified _FLSEEKLHY_ 0 0 0 nc|ENSG00000204410|O43196-4|MSH5;ENSG00000204410|ENST00000375750|MSH5;nc|ENSG00000204410|O43196-2|MSH5;nc|ENSG00000204410|O43196-3|MSH5 nc|ENSG00000204410|O43196-4|MSH5 nc|ENSG00000204410|O43196-4|MSH5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.8005981445312 2 583.298039 1164.58152 -0.44522 -0.0002597 4.0732 0.0023759 3.628 0.0021162 583.3001682417462 41.284 0.20711 41.284 41.137 41.344 0 14 9 2 0 0 0 0.19298 1 22202 22202 13.508 0 1 4383800 12517 10280 8636 8810 14385 14385 0.005817082691464748 FLSEHKADTF 10 Unmodified _FLSEHKADTF_ 0 0 0 REV__ENSG00000117597|ENST00000491415|UTP25 REV__ENSG00000117597|ENST00000491415|UTP25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7924194335938 2 597.793121 1193.57169 NaN NaN NaN NaN NaN NaN NaN 77.749 1 77.749 77.249 78.249 0 0 0 0 0.97302 1 43222 43222 3.5965 0.60125 1 + 12518 19117 8637 8811 14386 14386 -0.017354797362713725 FLSELQYYL 9 Unmodified _FLSELQYYL_ 0 0 0 ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3048095703125 2 588.30279 1174.59103 2.0395 0.0011999 0.9862 0.00058018 3.0257 0.0017801 588.3033315852969 93.979 0.32186 93.993 93.837 94.158 0.014244 23 12 2 0 0 0 0.0090851 1 52216 52216 85.357 43.517 1 3033700 12519 3919 8638 8812 14387 14387 0.010714765546708804 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7921142578125 2 539.792589 1077.57063 0.48465 0.00026161 0.028804 1.5548E-05 0.51345 0.00027716 539.7925423731232 72.654 0.40642 72.178 72 72.407 -0.47588 50 18 4 0 0 0 0.038285 2 39718 39718;39820 50.855 22.66 1 11476000 12520 10678 8639 8813 14388;14389 14388 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7922973632812 2 539.792589 1077.57063 0.25598 0.00013818 -1.234 -0.00066611 -0.97803 -0.00052793 539.7920145691279 72.15 0.341 72.189 72.035 72.376 0.039024 28 16 2 0 0 0 0.052168 2 39705 39705;39811 44.407 19.008 1 8467200 12521 10678 8639 8813 14390;14391 14390 0.03494305894855643 FLSELTQQL 9 Unmodified _FLSELTQQL_ 0 0 0 ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF ENST00000465752.1_1_22:24236661-24237189:+|nuORF ENST00000465752.1_1_22:24236661-24237189:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7927856445312 2 539.792589 1077.57063 0.83794 0.00045232 0.5883 0.00031756 1.4262 0.00076988 539.7924878136535 81.723 0.72179 75.547 75.21 75.932 -6.1757 95 40 3 0 0 0 0.023164 3 53642 53512;53642;53766 60.39 26.287 1 65961000 12522 10678 8639 8813 14392;14393;14394 14393 0.03494305894855643 FLSHIPITL 9 Unmodified _FLSHIPITL_ 0 0 0 ENSG00000109084|ENST00000226230|TMEM97;ENST00000582384.1_1_17:26646301-26653610:+|nuORF ENSG00000109084|ENST00000226230|TMEM97 ENSG00000109084|ENST00000226230|TMEM97 MSMS AL20221201_MKP_PDAC_01 4 520.8114013671875 2 520.810585 1039.60662 NaN NaN NaN NaN NaN NaN NaN 96.382 1 90.206 89.706 90.706 -6.1757 0 0 0 0.050352 1 63871 63871 57.471 11.45 1 12523 2628 8640 8814 14395 14395 0.08839807862364069 FLSHPFAVT 9 Unmodified _FLSHPFAVT_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2931213378906 2 509.77146 1017.52837 0.97126 0.00049512 -1.428 -0.00072794 -0.45672 -0.00023282 509.7710103624229 91.896 0.62529 85.72 85.312 85.937 -6.1757 56 35 2 0 0 0 0.18118 1 60561 60561 18.135 7.3111 1 10703000 12524 3705 8641 8815 14396 14396 0.0203037527712695 FLSIIQFDVP 10 Unmodified _FLSIIQFDVP_ 0 0 0 REV__ENST00000561490.5_1_15:52970294-53002005:-|nuORF REV__ENST00000561490.5_1_15:52970294-53002005:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3225708007812 2 589.826432 1177.63831 1.0027 0.00059143 -4.3981 -0.0025941 -3.3954 -0.0020027 589.8259272922292 101.22 0.15022 95.047 94.956 95.107 -6.1757 16 9 2 0 0 0 0.31022 1 67923 67923 26.884 4.1474 1 53911000 + 12525 28841 8642 8816 14397 14397 0.056597558256498814 FLSLHEWVD 9 Unmodified _FLSLHEWVD_ 0 0 0 REV__ENST00000379687.7_1_X:19935350-19935407:-|nuORF REV__ENST00000379687.7_1_X:19935350-19935407:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.2884521484375 2 573.284931 1144.55531 NaN NaN NaN NaN NaN NaN NaN 98.616 1 92.441 91.941 92.941 -6.1757 0 0 0 0.46757 1 65440 65440 16.942 3.4344 1 + 12526 26297 8643 8817 14398 14398 -0.011185609023414145 FLSLSLFSLF 10 Unmodified _FLSLSLFSLF_ 0 0 0 REV__ENST00000533683.6_2_19:14201006-14201489:-|nuORF REV__ENST00000533683.6_2_19:14201006-14201489:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8897705078125 3 391.889992 1172.64815 1.3215 0.00051788 -1.3507 -0.00052933 -0.029238 -1.1458E-05 391.88945583871254 88.571 0.51945 82.395 82.149 82.669 -6.1757 64 28 3 0 0 0 0.49559 1 58483 58483 16.566 3.6933 1 58381000 + 12527 28486 8644 8818 14399 14399 0.06872943831035627 FLSPASEEHL 10 Unmodified _FLSPASEEHL_ 0 0 0 ENST00000322177.5_1_15:75247781-75248108:-|nuORF ENST00000322177.5_1_15:75247781-75248108:-|nuORF ENST00000322177.5_1_15:75247781-75248108:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1888427734375 3 377.188989 1128.54514 -0.37926 -0.00014305 0.39 0.0001471 0.010741 4.0515E-06 377.1891672188087 24.142 0.24669 24.142 24.016 24.263 0 28 13 3 0 0 0 0.66569 1 12309 12309 6.1918 0.46 1 5310500 12528 11782 8645 8819 14400 14400 -0.013991686275630855 FLSPSAAAAY 10 Unmodified _FLSPSAAAAY_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2417297363281 2 499.2531 996.491647 -0.47185 -0.00023557 -0.36203 -0.00018074 -0.83388 -0.00041632 499.2532089199454 61.088 0.21978 60.599 60.516 60.735 -0.48932 17 10 2 0 0 0 0.6606 1 33231 33231 7.2892 0 1 2681100 12529 3678 8646 8820 14401 14401 -0.006739213394439503 FLSRFYSLA 9 Unmodified _FLSRFYSLA_ 0 0 0 ENST00000467942.2_1_3:111835494-111838338:+|nuORF;nc|ENSG00000114529|Q5BVD1-3|TTMP ENST00000467942.2_1_3:111835494-111838338:+|nuORF ENST00000467942.2_1_3:111835494-111838338:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 552.2937622070312 2 552.297842 1102.58113 NaN NaN NaN NaN NaN NaN NaN 100.81 1 94.637 94.137 95.137 -6.1757 0 0 0 0.096036 1 67516 67516 44.407 2.5674 1 12530 13794 8647 8821 14402 14402 0.03394333339952027 FLSRIHTDPGP 11 Unmodified _FLSRIHTDPGP_ 0 0 0 ENST00000265593.8_1_3:184075870-184076043:-|nuORF ENST00000265593.8_1_3:184075870-184076043:-|nuORF ENST00000265593.8_1_3:184075870-184076043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.32763671875 2 620.327662 1238.64077 -0.10597 -6.5734E-05 -0.32594 -0.00020219 -0.43191 -0.00026792 620.8289846096106 29.444 0.16147 29.444 29.328 29.489 0 19 7 4 0 0 0 0.65846 1 15234 15234 8.1555 2.8586 1 3615200 12531 11332 8648 8822 14403 14403 0.030996042833066895 FLSSIYCTF 9 Unmodified _FLSSIYCTF_ 0 0 0 REV__ENSG00000158077|ENST00000299481|NLRP14 REV__ENSG00000158077|ENST00000299481|NLRP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3056030273438 2 540.757161 1079.49977 4.3564 0.0023558 2.1493 0.0011622 6.5057 0.003518 540.7580473689686 99.153 0.13791 99.125 99.051 99.189 -0.028282 9 4 3 0 0 0 0.19298 1 55096 55096 13.508 0.97634 1 1103400 + 12532 21414 8649 8823 14404 14404 -0.03680110414347837 FLSSYIYFI 9 Unmodified _FLSSYIYFI_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.801513671875 2 576.802426 1151.5903 0.423 0.00024399 -1.2132 -0.00069978 -0.79021 -0.00045579 576.8013677415015 79.578 0.3268 79.633 79.495 79.821 0.05497 35 12 4 0 0 0 0.30562 1 43972 43972 16.942 3.8998 1 3869800 12533 4421 8650 8824 14405 14405 0.020566819056284658 FLSTIEEGFIR 11 Unmodified _FLSTIEEGFIR_ 0 0 0 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 REV__nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.5518493652344 3 437.902961 1310.68705 -0.17525 -7.6742E-05 1.1277 0.00049382 0.95244 0.00041708 437.90347687327306 23.852 0.18349 23.852 23.752 23.936 0 18 8 3 0 0 0 0.30551 1 12190 12190 2.6312 1.1761 1 1016900 + 12534 20261 8651 8825 14406 14406 0.04413624394737781 FLSTLEHHL 9 Unmodified _FLSTLEHHL_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.53125 3 366.197708 1095.57129 -0.22408 -8.2056E-05 1.0154 0.00037183 0.7913 0.00028977 366.1980826198258 44.613 0.16154 44.297 44.204 44.366 -0.31585 11 7 2 0 0 0 0.019979 1 23804 23804 47.749 21.728 1 13858000 12535 3909 8652 8826 14407 14407 0.027331453345595946 FLSTLEHHL 9 Unmodified _FLSTLEHHL_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1985473632812 3 366.197708 1095.57129 1.7649 0.00064629 2.0382 0.00074637 3.803 0.0013927 366.19797859136895 50.115 0.3318 44.576 44.393 44.725 -5.5391 35 21 2 0 0 0 0.087258 1 31452 31452 32.786 13.16 1 18991000 12536 3909 8652 8826 14408 14408 0.027331453345595946 FLSTSIAQL 9 Unmodified _FLSTSIAQL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2759094238281 2 490.276575 978.538597 0.75327 0.00036931 -1.5608 -0.00076524 -0.80756 -0.00039593 490.27650252664716 71.926 0.36032 71.965 71.788 72.149 0.039024 26 17 2 0 0 0 0.18465 1 39577 39577 24.674 0 1 2108800 12537 3699 8653 8827 14409 14409 0.04846938211687757 FLSTSIAQL 9 Unmodified _FLSTSIAQL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2767944335938 2 490.276575 978.538597 0.71881 0.00035242 -0.31789 -0.00015585 0.40092 0.00019656 490.2762751062496 80.394 0.21899 74.218 74.097 74.316 -6.1757 14 11 2 0 0 0 0.026094 1 52730 52730 57.471 15.377 1 8120600 12538 3699 8653 8827 14410 14410 0.04846938211687757 FLSTSIAQL 9 Unmodified _FLSTSIAQL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000550069.1_1_12:53689351-53689733:+|nuORF;nc|ENSG00000123349|Q99471-2|PFDN5;ENST00000551223.5_1_12:53689351-53690320:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 490.276575 978.538597 0.80728 0.00039579 0.2047 0.00010036 1.012 0.00049615 490.2764894836829 72.76 0.26192 72.284 72.124 72.386 -0.47588 0.1596 0.00024706 NaN 24.674 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 938290 12539 3699 8653 8827 0.04846938211687757 FLSTTLYKY 9 Unmodified _FLSTTLYKY_ 0 0 0 REV__ENST00000485620.1_1_7:6851667-6854454:-|nuORF REV__ENST00000485620.1_1_7:6851667-6854454:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2050476074219 3 379.20598 1134.59611 -0.55434 -0.00021021 -0.9384 -0.00035585 -1.4927 -0.00056606 379.5401303297458 14.878 0.037294 14.847 14.825 14.862 -0.030868 15 10 2 0 0 0 0.59532 1 7264 7264 0.86438 0 1 447800 + 12540 19352 8654 8828 14411 14411 0.034197804172890756 FLTDREVRL 9 Unmodified _FLTDREVRL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5529174804688 3 383.552262 1147.63496 0.26834 0.00010292 0.13451 5.1593E-05 0.40286 0.00015452 383.55234039483037 46.073 0.29316 45.736 45.588 45.881 -0.33664 33 14 3 0 0 0 0.044011 2 24601 24601;24706 43.982 22.392 1 30851000 12541 4591;967 8655 8829 14412;14413 14412 0.0670450577167685 FLTDREVRL 9 Unmodified _FLTDREVRL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8242797851562 2 574.824755 1147.63496 0.413 0.0002374 -0.51639 -0.00029684 -0.10339 -5.9432E-05 574.824365054497 46.07 0.19211 45.733 45.608 45.8 -0.33664 14 9 2 0 0 0 0.38785 1 24638 24638 13.042 1.4022 1 4960100 12542 4591;967 8655 8829 14414 14414 0.0670450577167685 FLTDREVRL 9 Unmodified _FLTDREVRL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5527648925781 3 383.552262 1147.63496 0.1374 5.2699E-05 0.39008 0.00014962 0.52748 0.00020231 383.8867958338096 45.783 0.24203 45.755 45.642 45.884 -0.028011 21 11 3 0 0 0 0.06294 1 24608 24608 38.615 8.7742 1 7383000 12543 4591;967 8655 8829 14415 14415 0.0670450577167685 FLTDREVRL 9 Unmodified _FLTDREVRL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5525817871094 3 383.552262 1147.63496 1.0386 0.00039837 0.094769 3.6349E-05 1.1334 0.00043472 383.5521656768777 51.641 0.34975 45.992 45.818 46.168 -5.649 44 21 3 0 0 0 0.032796 2 32443 32443;32582 42.312 15.089 1 73219000 12544 4591;967 8655 8829 14416;14417 14416 0.0670450577167685 FLTDREVRL 9 Unmodified _FLTDREVRL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 574.824755 1147.63496 0.67394 0.00038739 -1.037 -0.0005961 -0.36308 -0.00020871 574.8244236483621 51.654 0.25407 46.005 45.898 46.152 -5.649 0.13617 -0.00040936 NaN 13.042 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 23179000 12545 4591;967 8655 8829 0.0670450577167685 FLTFCCQMCL 10 Unmodified _FLTFCCQMCL_ 0 0 0 ENST00000283131.3_1_4:144449811-144451662:+|nuORF ENST00000283131.3_1_4:144449811-144451662:+|nuORF ENST00000283131.3_1_4:144449811-144451662:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.1725463867188 3 403.503881 1207.48981 NaN NaN NaN NaN NaN NaN NaN 78.332 1 77.846 77.346 78.346 -0.48596 0 0 0 0.98914 1 42902 42902 0.77653 0 1 12546 11423 8656 8830 14418 14418 -0.10563081007194342 FLTFLVSF 8 Unmodified _FLTFLVSF_ 0 0 0 REV__ENSG00000136856|ENST00000373371|SLC2A8 REV__ENSG00000136856|ENST00000373371|SLC2A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2736206054688 2 487.273304 972.532055 0.40067 0.00019523 2.8685 0.0013978 3.2692 0.001593 487.27499296652843 58.518 0.20982 58.027 57.839 58.049 -0.49079 12 9 2 0 0 0 0.77907 1 31786 31786 10.183 0.83596 1 4666500 + 12547 20188 8657 8831 14419 14419 0.04469045050996101 FLTHTKHL 8 Unmodified _FLTHTKHL_ 0 0 0 REV__ENSG00000188037|ENST00000343257|CLCN1 REV__ENSG00000188037|ENST00000343257|CLCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7842407226562 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 77.843 1 77.896 77.396 78.396 0.052452 0 0 0 0.97348 1 42975 42975 5.7604 0 1 + 12548 23683 8658 8832 14420 14420 0.057294838883080956 FLTKQEILL 9 Unmodified _FLTKQEILL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8375244140625 2 552.8368 1103.65905 0.79856 0.00044147 1.1047 0.00061072 1.9033 0.0010522 552.8371640413327 64.638 0.31943 64.633 64.476 64.796 -0.0043488 41 15 4 0 0 0 0.013609 1 35367 35367 70.332 2.2513 1 9862200 12549 9323 8659 8833 14421 14421 0.1113634620535322 FLTLRDRV 8 Unmodified _FLTLRDRV_ 0 0 0 ENST00000416030.1_1_9:76089327-76090080:-|nuORF ENST00000416030.1_1_9:76089327-76090080:-|nuORF ENST00000416030.1_1_9:76089327-76090080:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.8001098632812 2 510.303458 1018.59236 -0.39606 -0.00020211 -1.7543 -0.00089523 -2.1504 -0.0010973 510.3029721270965 34.223 0.17048 34.223 34.156 34.326 0 11 8 2 0 0 0 8.7369 1 18029 18029 6.3541 0 1 3831100 12550 13035 8660 8834 14422 14422 0.08381155434085485 FLTLVRLLIE 10 Unmodified _FLTLVRLLIE_ 0 0 0 REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10 REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2598876953125 3 406.260308 1215.7591 NaN NaN NaN NaN NaN NaN NaN 95.014 1 95.014 94.514 95.514 0 0 0 0 1.0047 1 52523 52523 0.15932 0 1 + 12551 22498 8661 8835 14423 14423 0.15984583539147934 FLTNQWAVTNP 11 Unmodified _FLTNQWAVTNP_ 0 0 0 nc|ENSG00000108639|O43760-2|SYNGR2;ENSG00000108639|ENST00000225777|SYNGR2 nc|ENSG00000108639|O43760-2|SYNGR2 nc|ENSG00000108639|O43760-2|SYNGR2 MSMS AL20221201_MKP_PDAC_01 4 430.8885192871094 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 54.848 1 48.983 48.483 49.483 -5.8653 0 0 0 0.93669 1 34841 34841 2.2527 0 1 12552 2592 8662 8836 14424 14424 0.007201845634881465 FLTNSTVTLF 10 Unmodified _FLTNSTVTLF_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8081665039062 2 571.808239 1141.60193 0.51016 0.00029172 -1.3666 -0.00078145 -0.85647 -0.00048973 571.8085126470045 63.226 0.49951 62.74 62.562 63.061 -0.48617 60 22 4 0 0 0 0.42068 1 34530 34530 20.454 5.6154 1 6596600 + 12553 18469 8663 8837 14425 14425 0.036788789289630586 FLTNSTVTLF 10 Unmodified _FLTNSTVTLF_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.808239 1141.60193 0.51016 0.00029172 -1.3666 -0.00078145 -0.85647 -0.00048973 571.8085126470045 63.226 0.49951 62.74 62.562 63.061 -0.48617 -0.056399 0.0010653 NaN 20.454 60 22 4 NaN NaN NaN NaN 0 NaN NaN 0 6596600 + 12554 18469 8663 8837 0.036788789289630586 FLTNSTVTLF 10 Unmodified _FLTNSTVTLF_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.808239 1141.60193 0.27308 0.00015615 -3.5092 -0.0020066 -3.2361 -0.0018504 572.3072698100935 62.875 0.38641 62.853 62.642 63.029 -0.021614 0.056399 -0.001385 NaN 20.454 35 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2946000 + 12555 18469 8663 8837 0.036788789289630586 FLTPSDLQAF 10 Unmodified _FLTPSDLQAF_ 0 0 0 nc|ENSG00000124191|Q96NM4-3|TOX2;nc|ENSG00000124191|Q96NM4|TOX2;ENSG00000124191|ENST00000341197|TOX2;nc|ENSG00000124191|Q96NM4-2|TOX2 nc|ENSG00000124191|Q96NM4-3|TOX2 nc|ENSG00000124191|Q96NM4-3|TOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.1982116699219 3 380.197485 1137.57063 1.3737 0.00052228 -1.2734 -0.00048416 0.10028 3.8126E-05 380.1966675080977 19.134 0.18559 16.478 16.361 16.546 -2.6564 17 12 2 0 0 0 0.69377 1 10117 10117 1.7423 0 1 2271400 12556 3757 8664 8838 14426 14426 0.0073430589486633835 FLTQAETIQSA 11 Unmodified _FLTQAETIQSA_ 0 0 0 REV__ENSG00000183914|ENST00000572933|DNAH2 REV__ENSG00000183914|ENST00000572933|DNAH2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2678833007812 2 604.81151 1207.60847 0.043729 2.6448E-05 -2.504 -0.0015145 -2.4603 -0.001488 604.8079650194854 65.7 0.20828 65.216 65.081 65.289 -0.48428 11 8 2 0 0 0 0.30538 1 35818 35818 2.4985 0 1 642730 + 12557 23387 8665 8839 14427 14427 0.012967720896767787 FLTRLNVVRC 10 Unmodified _FLTRLNVVRC_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5697631835938 3 407.569259 1219.68595 0.28991 0.00011816 0.78679 0.00032067 1.0767 0.00043883 407.56961021488377 14.966 0.62642 12.439 12.128 12.754 -2.5273 236 100 3 0 0 0 0.67755 1 7777 7777 5.4027 0 1 8990500 + 12558 23951 8666 8840 14428 14428 0.08489131544865813 FLTRLQVHL 9 Unmodified _FLTRLQVHL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2292175292969 3 376.229231 1125.66586 0.71301 0.00026826 -0.46863 -0.00017631 0.24438 9.1944E-05 376.5633649286868 57.171 0.24208 57.105 56.978 57.22 -0.066036 25 11 3 0 0 0 0.14594 1 31103 31103 28.495 2.2264 1 8479400 12559 3160 8667 8841 14429 14429 0.10805703876553707 FLVDAYEKF 9 Unmodified _FLVDAYEKF_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2914428710938 2 566.289682 1130.56481 0.32831 0.00018592 0.66285 0.00037536 0.99116 0.00056129 566.2899444505335 63.356 0.42033 63.356 63.146 63.567 0 40 21 2 0 0 0 0.18144 1 35409 35409 26.884 1.4843 1 4075600 + 12560 19010 8668 8842 14430 14430 0.00475207383169618 FLVEHNLVL 9 Unmodified _FLVEHNLVL_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3133544921875 2 542.313492 1082.61243 0.16943 9.1882E-05 0.11101 6.0202E-05 0.28043 0.00015208 542.3135047968361 68.611 0.25439 68.13 68.01 68.264 -0.48071 21 11 2 0 0 0 0.23158 1 37540 37540 20.454 8.8133 1 3197500 12561 3136 8669 8843 14431 14431 0.07442906374035374 FLVEKQCAV 9 Carbamidomethyl (C) _FLVEKQC(Carbamidomethyl (C))AV_ FLVEKQC(1)AV FLVEKQC(69)AV 0 1 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.288818359375 2 547.289159 1092.56377 0.6126 0.00033527 -0.18483 -0.00010116 0.42777 0.00023412 547.2891035327362 43.136 0.34529 38.371 38.18 38.525 -4.7648 44 23 2 0 0 0 0.014417 1 26195 26195 69.105 25.247 1 48654000 12562 8546;15522 8670 8844 14432 14432 822 0.02118669742617385 FLVGHPGF 8 Unmodified _FLVGHPGF_ 0 0 0 REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2337341308594 2 437.234513 872.454474 0.32723 0.00014308 -2.1309 -0.00093171 -1.8037 -0.00078863 437.23356726928887 46.754 0.25372 46.754 46.585 46.839 0 23 11 3 0 0 0 0.80624 1 25562 25562 2.8892 0 1 2479400 + 12563 19203 8671 8845 14433 14433 0.013144519054662851 FLVNLWLPL 9 Unmodified _FLVNLWLPL_ 0 0 0 REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2276000976562 3 372.226827 1113.65865 0.18435 6.862E-05 0.43218 0.00016087 0.61653 0.00022949 372.22728667393073 51.872 0.20656 51.813 51.711 51.917 -0.058918 21 9 3 0 0 0 0.39863 1 28125 28125 8.1555 0.67846 1 978600 + 12564 25396 8672 8846 14434 14434 0.1063697127613068 FLVPESAP 8 Unmodified _FLVPESAP_ 0 0 0 REV__nc|ENSG00000160097|Q8NAU1-4|FNDC5 REV__nc|ENSG00000160097|Q8NAU1-4|FNDC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4574584960938 1 859.455996 858.448719 -0.57838 -0.00049709 1.0378 0.00089197 0.45945 0.00039488 859.4568600108059 69.441 0.27647 68.962 68.81 69.086 -0.47903 21 11 2 0 0 0 0.41521 1 38012 38012 42.968 2.5194 1 2200600 + 12565 21514 8673 8847 14435 14435 0.013833086031354469 FLVQMQDL 8 Unmodified _FLVQMQDL_ 0 0 0 ENST00000588059.5_1_18:61064418-61077532:-|nuORF ENST00000588059.5_1_18:61064418-61077532:-|nuORF ENST00000588059.5_1_18:61064418-61077532:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2582397460938 2 497.257328 992.500103 0.24097 0.00011982 -1.0101 -0.00050226 -0.76909 -0.00038243 497.256871568291 61.623 0.27347 61.623 61.455 61.728 0 18 12 2 0 0 0 0.71527 1 34378 34378 15.847 0 1 1409500 12566 15642 8674 8848 14436 14436 0.00355309305530227 FLVQNIHTL 9 Unmodified _FLVQNIHTL_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1;ENST00000510960.5_1_5:34915843-34922894:+|nuORF ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8130493164062 2 542.811116 1083.60768 0.29207 0.00015854 0.3096 0.00016806 0.60167 0.00032659 542.8113771077926 59.811 0.26099 59.758 59.614 59.875 -0.053062 29 12 3 0 0 0 0.0090948 1 32586 32586 85.272 33.004 1 9531400 12567 2970 8675 8849 14437 14437 0.06922022231265146 FLVWCLLSF 9 Unmodified _FLVWCLLSF_ 0 0 0 REV__ENSG00000151690|ENST00000392328|MFSD6 REV__ENSG00000151690|ENST00000392328|MFSD6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2808227539062 2 564.301539 1126.58852 1.1457 0.00064652 -3.9446 -0.002226 -2.7989 -0.0015794 564.299212719857 63.574 0.37582 57.398 57.13 57.506 -6.1757 30 21 2 0 0 0 0.082914 1 41190 41190 32.117 17.279 1 24503000 + 12568 21083 8676 8850 14438 14438 0.03029349615985666 FLWCEVEKY 9 Carbamidomethyl (C) _FLWC(Carbamidomethyl (C))EVEKY_ FLWC(1)EVEKY FLWC(42)EVEKY 0 1 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.3013305664062 2 637.299724 1272.5849 NaN NaN NaN NaN NaN NaN NaN 66.324 1 65.841 65.341 66.341 -0.48323 0 0 0 0.10661 1 36214 36214 41.956 24.843 1 12569 2874 8677 8851 14439 14439 294 -0.04049364948514267 FLWCEVEKY 9 Carbamidomethyl (C) _FLWC(Carbamidomethyl (C))EVEKY_ FLWC(1)EVEKY FLWC(83)EVEKY 0 1 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.8026123046875 2 637.299724 1272.5849 0.60564 0.00038597 0.34856 0.00022214 0.95421 0.00060811 637.2998514804567 75.955 0.47473 69.779 69.601 70.076 -6.1757 40 25 2 0 0 0 0.0094097 2 49762 49632;49762 82.529 59.793 1 7297300 12570 2874 8677 8851 14440;14441 14441 294 -0.04049364948514267 FLWDEGFHQL 10 Unmodified _FLWDEGFHQL_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.81005859375 2 646.308938 1290.60332 0.54987 0.00035539 1.6096 0.0010403 2.1595 0.0013957 646.3097420845048 81.907 0.24124 81.412 81.287 81.528 -0.49521 19 8 3 0 0 0 0.65891 1 44854 44854 12.241 5.5175 1 640830 12571 3104 8678 8852 14442 14442 -0.030354869822986075 FLWDEGFHQL 10 Unmodified _FLWDEGFHQL_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3101196289062 2 646.308938 1290.60332 1.2503 0.00080807 -1.5556 -0.0010054 -0.30532 -0.00019733 646.3079876969833 96.643 0.35181 90.468 90.27 90.622 -6.1757 41 20 3 0 0 0 0.12584 2 64094 63975;64094 57.722 26.818 1 13546000 12572 3104 8678 8852 14443;14444 14444 -0.030354869822986075 FLWDEGFHQL 10 Unmodified _FLWDEGFHQL_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 646.308938 1290.60332 1.4845 0.00095943 1.8982 0.0012269 3.3827 0.0021863 646.3102121953448 81.335 0.19302 81.395 81.287 81.48 0.059929 -0.0083507 0.00017129 NaN 12.241 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2112300 12573 3104 8678 8852 -0.030354869822986075 FLWDVPSNWTL 11 Unmodified _FLWDVPSNWTL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS AL20221201_MKP_PDAC_01 4 689.345703125 2 689.34552 1376.67649 NaN NaN NaN NaN NaN NaN NaN 101.62 1 95.449 94.949 95.949 -6.1757 0 0 0 0.69464 1 68204 68204 17.113 3.2068 1 12574 7904 8679 8853 14445 14445 0.003216417403336891 FLWEVESF 8 Unmodified _FLWEVESF_ 0 0 0 REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF REV__ENST00000510312.6_1_5:73199984-73200204:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7534790039062 2 528.755475 1055.4964 0.022175 1.1725E-05 -4.3882 -0.0023203 -4.366 -0.0023085 528.7543125445164 71.062 0.31866 71.062 70.895 71.214 0 33 13 3 0 0 0 0.77907 1 39541 39541 10.183 0 1 2152800 + 12575 28140 8680 8854 14446 14446 -0.029130371966857638 FLWIHRSFL 9 Unmodified _FLWIHRSFL_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8967590332031 3 406.897593 1217.67095 -0.096845 -3.9406E-05 -0.71846 -0.00029234 -0.81531 -0.00033175 406.8965014482697 34.289 0.33655 34.317 34.203 34.54 0.027401 36 15 3 0 0 0 0.2324 1 18066 18066 20.415 1.6933 1 5074300 + 12576 19755 8681 8855 14447 14447 0.07082007739177243 FLWKEPATM 9 Oxidation (M) _FLWKEPATM(Oxidation (M))_ FLWKEPATM(1) FLWKEPATM(65) 0 0 1 ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7842407226562 2 569.78371 1137.55287 0.90191 0.00051389 -0.70433 -0.00040132 0.19758 0.00011258 569.7833740758781 49.557 0.45364 49.508 49.31 49.763 -0.048824 61 22 4 0 0 0 0.018301 1 26836 26836 65.235 42.087 1 11139000 12577 5296;15469 8682 8856 14448 14448 973 -0.010407326316908438 FLWKEPATM 9 Oxidation (M) _FLWKEPATM(Oxidation (M))_ FLWKEPATM(1) FLWKEPATM(86) 0 0 1 ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7843017578125 2 569.78371 1137.55287 1.2664 0.00072156 -1.1477 -0.00065393 0.11869 6.7627E-05 569.7828705390335 55.395 0.4164 49.474 49.35 49.766 -5.9211 53 25 3 0 0 0 0.0089732 2 35393 35250;35393 86.332 50.288 1 31789000 12578 5296;15469 8682 8856 14449;14450 14450 973 -0.010407326316908438 FLWMLFKKFP 10 Unmodified _FLWMLFKKFP_ 0 0 0 ENST00000510979.5_1_5:68882095-68882161:+|nuORF ENST00000510979.5_1_5:68882095-68882161:+|nuORF ENST00000510979.5_1_5:68882095-68882161:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.88134765625 2 678.880487 1355.74642 NaN NaN NaN NaN NaN NaN NaN 15.039 1 15.044 14.544 15.544 0.0057774 0 0 0 1.0019 1 7479 7479 0.45834 0 1 12579 14599 8683 8857 14451 14451 0.08277848875218297 FLYAGHIFL 9 Unmodified _FLYAGHIFL_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7991333007812 2 540.797478 1079.5804 1.0629 0.00057483 1.7974 0.00097201 2.8603 0.0015468 540.7983911508451 97.986 0.15928 91.81 91.716 91.875 -6.1757 20 9 3 0 0 0 0.10734 1 64952 64952 45.75 24.879 1 33730000 12580 4368 8684 8858 14452 14452 0.04379538690886875 FLYDDNQRV 9 Unmodified _FLYDDNQRV_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2818603515625 2 585.28292 1168.55129 0.44247 0.00025897 1.344 0.00078664 1.7865 0.0010456 585.2840160492686 46.376 0.29524 41.296 41.064 41.359 -5.0805 36 19 2 0 0 0 0.07087 1 28548 28548 39.95 3.4435 1 28611000 12581 4347 8685 8859 14453 14453 -0.02624650396069228 FLYEEEAAQQQ 11 Unmodified _FLYEEEAAQQQ_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.54248046875 3 452.54198 1354.60411 0.33005 0.00014936 0.18567 8.4021E-05 0.51571 0.00023338 452.54210119014675 50.923 0.36007 50.509 50.338 50.698 -0.41351 31 17 3 0 0 0 0.68427 1 27440 27440 2.6312 0.19645 1 3052600 12582 16188 8686 8860 14454 14454 -0.0590073712389767 FLYEIIEII 9 Unmodified _FLYEIIEII_ 0 0 0 REV__ENSG00000256394|ENST00000537611|ASIC5 REV__ENSG00000256394|ENST00000537611|ASIC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2230224609375 3 384.889881 1151.64781 0.8657 0.0003332 -2.0439 -0.00078667 -1.1782 -0.00045347 384.8888847361925 46.337 0.37066 46.303 46.139 46.51 -0.033421 57 17 4 0 0 0 0.30562 1 24907 24907 11.495 0 1 16661000 + 12583 24553 8687 8861 14455 14455 0.07805524111199702 FLYKLFNVE 9 Unmodified _FLYKLFNVE_ 0 0 0 REV__ENSG00000189182|ENST00000341809|KRT77 REV__ENSG00000189182|ENST00000341809|KRT77 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5494995117188 3 391.549859 1171.62775 0.83703 0.00032774 -1.5803 -0.00061876 -0.74325 -0.00029102 391.5491194175193 44.849 0.31175 39.997 39.863 40.175 -4.852 33 20 2 0 0 0 0.36964 1 27404 27404 9.544 0 1 15639000 + + 12584 16885 8688 8862 14456 14456 0.048797731712284076 FLYLSQYLPI 10 Unmodified _FLYLSQYLPI_ 0 0 0 REV__nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2 REV__nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5699157714844 3 419.56903 1255.68526 0.18032 7.5657E-05 1.2408 0.00052062 1.4212 0.00059627 419.56958618907487 25.517 0.26652 22.634 22.464 22.73 -2.8831 22 14 2 0 0 0 0.65023 1 13961 13961 8.4443 2.2525 1 4701300 + 12585 29864 8689 8863 14457 14457 0.06764615376800975 FLYLWKST 8 Unmodified _FLYLWKST_ 0 0 0 REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT REV__nc|ENSG00000175600|Q9HAC7-4|SUGCT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1953430175781 3 353.195416 1056.56442 NaN NaN NaN NaN NaN NaN NaN 89.305 1 89.305 88.805 89.805 0 0 0 0 0.97444 1 49416 49416 1.4819 0.51963 1 + 12586 22883 8690 8864 14458 14458 0.03839832453991221 FLYPFPLAL 9 Unmodified _FLYPFPLAL_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.810791015625 2 540.810054 1079.60555 0.84254 0.00045565 0.83811 0.00045326 1.6806 0.00090891 540.8103959383873 102.3 0.1413 96.123 96.052 96.193 -6.1757 27 8 5 0 0 0 0.016115 1 68653 68653 67.413 30.947 1 131380000 12587 7493 8691 8865 14459 14459 0.06893593493464323 FLYPFPLALF 10 Unmodified _FLYPFPLALF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.3465576171875 2 614.344261 1226.67397 1.392 0.00085514 2.3074 0.0014175 3.6993 0.0022727 614.3469899173111 103.03 0.056091 96.85 96.818 96.874 -6.1757 23 15 2 0 0 0 0.046949 1 69099 69099 59.795 31.308 1 3636400 12588 7493 8692 8866 14460 14460 0.0696983807331435 FLYPGLADS 9 Unmodified _FLYPGLADS_ 0 0 0 ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 982.4860229492188 1 982.488024 981.480748 -0.052153 -5.1239E-05 0.64212 0.00063087 0.58996 0.00057963 982.4877593255395 65.754 0.14447 65.269 65.169 65.314 -0.48428 8 5 2 0 0 0 0.39863 1 35915 35915 12.532 0 1 952090 12589 7465 8693 8867 14461 14461 -0.010733237137060314 FLYQYSTRL 9 Unmodified _FLYQYSTRL_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8142700195312 2 595.813856 1189.61316 -0.14422 -8.5929E-05 0.27585 0.00016435 0.13162 7.8424E-05 595.8142658964073 55.415 0.19759 55.347 55.218 55.415 -0.068737 16 9 2 0 0 0 0.14859 1 30101 30101 36.506 18.36 1 2481300 12590 4891 8694 8868 14462 14462 0.025937010230791202 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1 ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2772827148438 2 557.276772 1112.53899 0.32426 0.00018071 -0.62587 -0.00034878 -0.3016 -0.00016808 557.2764404764106 70.067 0.23872 70.067 69.964 70.203 0 69 44 2 0 0 0 0.12841 1 38995 38995 30.225 13.283 1 4929100 12591 884;4499 8695 8869 14463 14463 -0.012776868590890444 FLYSDEVQI 9 Unmodified _FLYSDEVQI_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1 ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2781372070312 2 557.276772 1112.53899 0.48339 0.00026938 0.12117 6.7525E-05 0.60456 0.00033691 557.2770667372229 70.6 0.23655 70.123 70.031 70.268 -0.47735 28 21 2 0 0 0 0.16226 1 38584 38584 26.884 8.7487 1 4188700 12592 884;4499 8695 8869 14464 14464 -0.012776868590890444 FLYVHHTY 8 Unmodified _FLYVHHTY_ 0 0 0 ENSG00000161031|ENST00000340880|PGLYRP2;CON__ENSEMBL:ENSBTAP00000016285;nc|ENSG00000161031|Q96PD5-2|PGLYRP2 ENSG00000161031|ENST00000340880|PGLYRP2 ENSG00000161031|ENST00000340880|PGLYRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2670288085938 2 540.269084 1078.52362 NaN NaN NaN NaN NaN NaN NaN 38.579 1 38.292 37.792 38.792 -0.28687 0 0 0 0.70013 1 20313 20313 28.173 4.1527 1 + 12593 141 8696 8870 14465 14465 -0.012505088656098451 FMCSCSSDECN 11 Unmodified _FMCSCSSDECN_ 0 0 0 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 409.1270446777344 3 409.125798 1224.35557 NaN NaN NaN NaN NaN NaN NaN 24.954 1 22.07 21.57 22.57 -2.8831 0 0 0 0.94184 1 13620 13620 0.40827 0 1 12594 7007 8697 8871 14466 14466 -0.24763811290540616 FMCVYYCLL 9 Unmodified _FMCVYYCLL_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2570190429688 2 577.757792 1153.50103 0.31384 0.00018132 -0.82926 -0.00047911 -0.51542 -0.00029779 577.757341933506 90.369 0.41917 90.369 90.114 90.533 0 49 25 3 0 0 0 0.58466 1 49905 49905 2.3027 0 1 1801200 12595 10832 8698 8872 14467 14467 -0.06957935641412405 FMECCCCCCE 10 Unmodified _FMECCCCCCE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.7618408203125 3 391.760529 1172.25976 NaN NaN NaN NaN NaN NaN NaN 48.199 1 48.199 47.699 48.699 0 0 0 0 1.0061 1 26430 26430 0 0 1 12596 8020 8699 8873 14468 14468 -0.31948321998333995 FMELYHQSVVY 11 Unmodified _FMELYHQSVVY_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MSMS AL20221201_MKP_PDAC_01 4 708.3394775390625 2 708.336838 1414.65912 NaN NaN NaN NaN NaN NaN NaN 90.887 1 84.712 84.212 85.212 -6.1757 0 0 0 0.61053 1 60061 60061 20.415 8.1739 1 12597 1960 8700 8874 14469 14469 -0.03162021856996944 FMEPCYNCHF 10 Unmodified _FMEPCYNCHF_ 0 0 0 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS AL20221201_MKP_PDAC_01 4 430.8885192871094 3 430.829533 1289.46677 NaN NaN NaN NaN NaN NaN NaN 59.273 1 53.199 52.699 53.699 -6.0745 0 0 0 0.99897 1 38040 38040 0.77653 0 1 + 12598 18269 8701 8875 14470 14470 -0.16638383800341217 FMEREHLIF 9 Unmodified _FMEREHLIF_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;ENST00000479510.2_1_6:33387852-33406697:+|nuORF nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MSMS AL20221201_MKP_PDAC_01 4 408.2116088867188 3 407.874348 1220.60121 NaN NaN NaN NaN NaN NaN NaN 16.457 1 13.9 13.4 14.4 -2.557 0 0 0 0.54558 1 8526 8526 14.405 2.1647 1 12599 9937 8702 8876 14471 14471 -0.00026238991745231033 FMEREHLIF 9 Unmodified _FMEREHLIF_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;ENST00000479510.2_1_6:33387852-33406697:+|nuORF nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MSMS AL20221201_MKP_PDAC_01 4 407.8729553222656 3 407.874348 1220.60121 NaN NaN NaN NaN NaN NaN NaN 16.693 1 14.136 13.636 14.636 -2.557 0 0 0 0.54558 1 8665 8665 14.405 5.9611 1 12600 9937 8702 8876 14472 14472 -0.00026238991745231033 FMFLYYPP 8 Unmodified _FMFLYYPP_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2599487304688 2 539.259339 1076.50413 NaN NaN NaN NaN NaN NaN NaN 92.545 1 92.545 92.045 93.045 0 0 0 0 0.97444 1 51173 51173 0.79363 0 1 12601 10311 8703 8877 14473 14473 -0.031066012007386234 FMGDFVDRGFY 11 Unmodified _FMGDFVDRGFY_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.5396423339844 3 451.869262 1352.58596 0.17666 7.9825E-05 1.3464 0.00060842 1.5231 0.00068824 451.86995535008555 25.078 0.51896 22.195 21.945 22.464 -2.8831 193 45 6 0 0 0 0.69155 1 13778 13778 5.0475 1.2016 1 150600000 12602 6041 8704 8878 14474 14474 -0.0762315057959313 FMGKGPGGAS 10 Unmodified _FMGKGPGGAS_ 0 0 0 REV__nc|ENSG00000165688|Q10713-2|PMPCA REV__nc|ENSG00000165688|Q10713-2|PMPCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7180786132812 2 454.71837 907.422187 0.63503 0.00028876 -1.7942 -0.00081585 -1.1591 -0.00052709 454.7172390340608 79.181 0.45604 79.236 78.988 79.445 0.054977 47 17 3 0 0 0 0.71123 1 43682 43682 1.6526 0.85899 1 24132000 + 12603 29757 8705 8879 14475 14475 -0.03522703559826823 FMGTEGEDAI 10 Unmodified _FMGTEGEDAI_ 0 0 0 REV__ENST00000580376.5_1_17:61901002-61901722:-|nuORF REV__ENST00000580376.5_1_17:61901002-61901722:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7334594726562 2 535.228965 1068.44338 0.8013 0.00042888 1.6874 0.00090314 2.4887 0.001332 535.2296754678871 73.872 0.31759 67.696 67.489 67.807 -6.1757 20 15 2 0 0 0 0.62068 1 48207 48207 10.074 0.72649 1 12710000 + 12604 18620 8706 8880 14476 14476 -0.08810783041622017 FMHIFKFVL 9 Unmodified _FMHIFKFVL_ 0 0 0 nc|ENSG00000181718|Q8NGG2|OR5T2 nc|ENSG00000181718|Q8NGG2|OR5T2 nc|ENSG00000181718|Q8NGG2|OR5T2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2854614257812 2 591.33063 1180.64671 0.58357 0.00034508 1.6119 0.00095317 2.1955 0.0012983 591.3316563633972 62.045 0.25478 61.558 61.426 61.681 -0.48764 24 11 3 0 0 0 0.17275 1 33829 33829 21.747 0 1 2978600 12605 16432 8707 8881 14477 14477 0.06361031261303651 FMHLILLG 8 Unmodified _FMHLILLG_ 0 0 0 ENSG00000182489|ENST00000372956|XKRX ENSG00000182489|ENST00000372956|XKRX ENSG00000182489|ENST00000372956|XKRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2756958007812 2 472.275324 942.536095 1.0099 0.00047695 2.283 0.0010782 3.2928 0.0015551 472.2754785695757 80.086 0.53046 79.597 79.454 79.984 -0.48932 38 20 3 0 0 0 0.80975 1 43962 43962 0.79363 0 1 1331100 12606 9059 8708 8882 14478 14478 0.06252811273077441 FMHYDELHL 9 Unmodified _FMHYDELHL_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|112|2|sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|112|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8403930664062 2 602.776416 1203.53828 0.88908 0.00053592 1.5516 0.00093529 2.4407 0.0014712 602.7780679030121 63.946 0.21191 63.936 63.825 64.037 -0.010532 14 10 2 0 0 0 0.20528 1 34979 34979 4.756 0 1 1842100 + 12607 29371 8709 8883 14479 14479 -0.055348047797906474 FMIAEGHGDKQ 11 Unmodified _FMIAEGHGDKQ_ 0 0 0 REV__ENSG00000117115|ENST00000375486|PADI2 REV__ENSG00000117115|ENST00000375486|PADI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7879028320312 2 616.790055 1231.56556 NaN NaN NaN NaN NaN NaN NaN 20.098 1 20.098 19.598 20.598 0 0 0 0 0.94184 1 10096 10096 1.1933 0.59184 1 + 12608 19085 8710 8884 14480 14480 -0.040963212393990034 FMILILPIH 9 Unmodified _FMILILPIH_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|332|3|anti-sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|332|3|anti-sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|332|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2823486328125 3 366.224429 1095.65146 NaN NaN NaN NaN NaN NaN NaN 99.426 1 99.39 98.89 99.89 -0.036301 0 0 0 0.85261 1 55220 55220 1.1933 0.49568 1 12609 15963 8711 8885 14481 14481 0.10745915404072548 FMLFDLKY 8 Unmodified _FMLFDLKY_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.8222045898438 2 538.777896 1075.54124 0.53701 0.00028933 -0.51814 -0.00027916 0.018872 1.0168E-05 538.7780684769464 60.802 0.16626 60.802 60.718 60.885 0 9 6 2 0 0 0 0.80311 1 33866 33866 4.756 0 1 380090 + 12610 22551 8712 8886 14482 14482 0.006490703450026558 FMLFDLKY 8 Unmodified _FMLFDLKY_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.777896 1075.54124 0.53701 0.00028933 -0.51814 -0.00027916 0.018872 1.0168E-05 538.7780684769464 60.802 0.16626 60.802 60.718 60.885 0 0 0 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 380090 + 12611 22551 8712 8886 0.006490703450026558 FMLFDLTL 8 Unmodified _FMLFDLTL_ 0 0 0 REV__ENST00000545201.6_1_19:7599214-7599667:+|nuORF REV__ENST00000545201.6_1_19:7599214-7599667:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.2677612304688 2 500.264622 998.514691 NaN NaN NaN NaN NaN NaN NaN 56.103 1 50.126 49.626 50.626 -5.9769 0 0 0 0.44807 1 35771 35771 46.921 0.89992 1 + 12612 28645 8713 8887 14483 14483 0.015373814536701502 FMLSISPRL 9 Unmodified _FMLSISPRL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.302978515625 2 532.30207 1062.58959 1.0289 0.00054766 0.322 0.0001714 1.3509 0.00071907 532.3022889851652 92.136 0.30891 85.96 85.806 86.115 -6.1757 26 18 2 0 0 0 0.11784 1 60972 60972 31.268 6.2774 1 13024000 12613 10258 8714 8888 14484 14484 0.06079563984917513 FMNPCCLGF 9 2 Carbamidomethyl (C) _FMNPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LGF_ FMNPC(1)C(1)LGF FMNPC(54)C(54)LGF 0 2 0 ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENSG00000142089|ENST00000399808|IFITM3 ENSG00000142089|ENST00000399808|IFITM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2333984375 2 573.232473 1144.45039 1.2469 0.00071477 -0.19946 -0.00011434 1.0474 0.00060043 573.2325781477234 86.193 0.47337 80.018 79.81 80.283 -6.1757 54 25 3 0 0 0 0.03327 2 56773 56773;56900 53.576 42.461 1 16276000 12614 5390 8715 8889 14485;14486 14485 552;553 -0.11605464966396539 FMNVYFWL 8 Unmodified _FMNVYFWL_ 0 0 0 nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF nc|ENSG00000101158|Q8IXH7-3|NELFCD nc|ENSG00000101158|Q8IXH7-3|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2731323242188 2 560.270238 1118.52592 0.51498 0.00028853 0.40015 0.00022419 0.91513 0.00051272 560.2712883449864 68.352 0.4269 68.352 68.099 68.526 0 28 19 2 0 0 0 0.80624 1 38054 38054 2.8892 0 1 1521100 12615 14112 8716 8890 14487 14487 -0.028597964521850372 FMSEYLIEL 9 Oxidation (M) _FM(Oxidation (M))SEYLIEL_ FM(1)SEYLIEL FM(67)SEYLIEL 0 0 1 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7803955078125 2 580.780833 1159.54711 1.2227 0.00071012 -1.2248 -0.00071132 -0.0020665 -1.2002E-06 580.780745870612 96.09 0.65775 89.915 89.508 90.166 -6.1757 82 40 3 0 0 0 0.016184 2 63536 63536;63662 67.344 16.489 1 15747000 12616 9762 8717 8891 14488;14489 14488 1568 -0.026278759339675162 FMSSTSGK 8 Unmodified _FMSSTSGK_ 0 0 0 REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.6971740722656 2 422.697103 843.379654 0.1296 5.4783E-05 0.2829 0.00011958 0.4125 0.00017436 422.6972782843238 54.838 0.27864 54.371 54.261 54.54 -0.46664 23 13 2 0 0 0 0.80763 1 29745 29745 2.0598 1.2661 1 3773600 + 12617 24970 8718 8892 14490 14490 -0.048300986880462915 FMTFDSTIHF 10 Unmodified _FMTFDSTIHF_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8597717285156 3 415.858475 1244.5536 NaN NaN NaN NaN NaN NaN NaN 21.365 1 21.365 20.865 21.865 0 0 0 0 0.99091 1 10805 10805 0.69767 0.46182 1 12618 5110 8719 8893 14491 14491 -0.05889937982601623 FMVKHWLA 8 Unmodified _FMVKHWLA_ 0 0 0 REV__DDTL-GSTT1|1|fusion REV__DDTL-GSTT1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1031.072387695312 1 1031.54952 1030.54224 0.35072 0.00036179 0.73783 0.0007611 1.0886 0.0011229 1032.5560848325063 88.111 0.24336 87.607 87.482 87.725 -0.50423 15 9 2 0 0 0 0.80975 1 48236 48236 0.79363 0.10326 1 659900 + 12619 16904 8720 8894 14492 14492 0.028193295045866762 FMVKHWLA 8 Unmodified _FMVKHWLA_ 0 0 0 REV__DDTL-GSTT1|1|fusion REV__DDTL-GSTT1|1|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1031.54952 1030.54224 -0.34701 -0.00035796 -5.771 -0.0059531 -6.1181 -0.0063111 1032.5489419108972 87.623 0.23067 87.623 87.465 87.696 0 0.008227 -0.0019956 NaN 0.79363 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 559740 + 12620 16904 8720 8894 0.028193295045866762 FMVKHWLA 8 Unmodified _FMVKHWLA_ 0 0 0 REV__DDTL-GSTT1|1|fusion REV__DDTL-GSTT1|1|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1031.54952 1030.54224 0.35072 0.00036179 0.73783 0.0007611 1.0886 0.0011229 1032.5560848325063 88.111 0.24336 87.607 87.482 87.725 -0.50423 -0.008227 0.0047186 NaN 0.79363 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 659900 + 12621 16904 8720 8894 0.028193295045866762 FMVVGLLIL 9 Unmodified _FMVVGLLIL_ 0 0 0 REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8143005371094 2 502.814282 1003.61401 -0.045442 -2.2849E-05 0.40927 0.00020579 0.36383 0.00018294 502.8143371012196 87.538 0.46398 87.592 87.4 87.864 0.053352 61 21 4 0 0 0 0.62242 1 48606 48606 0 0 1 189450000 + 12622 27623 8721 8895 14493 14493 0.11234824138466593 FMWTFAALFFF 11 Unmodified _FMWTFAALFFF_ 0 0 0 REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 714.3458251953125 2 714.346477 1426.6784 0.52387 0.00037422 -0.36194 -0.00025855 0.16193 0.00011568 714.3458939080459 101.63 0.13034 95.45 95.373 95.503 -6.1757 20 6 4 0 0 0 0.54936 1 68201 68201 13.906 1.6654 1 32147000 + 12623 21027 8722 8896 14494 14494 -0.01787020775441306 FMYAHLAF 8 Unmodified _FMYAHLAF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2423706054688 2 500.241481 998.468409 0.39793 0.00019906 0.32896 0.00016456 0.72689 0.00036362 500.24157718719636 61.446 0.40834 61.446 61.254 61.663 0 37 18 3 0 0 0 0.70131 1 34311 34311 17.087 1.3183 1 6848500 12624 3030 8723 8897 14495 14495 -0.030886386577549274 FMYFSGCF 8 Unmodified _FMYFSGCF_ 0 0 0 ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6 ENSG00000128973|ENST00000249806|CLN6 ENSG00000128973|ENST00000249806|CLN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.6994934082031 2 501.198425 1000.3823 0.66281 0.0003322 -0.8581 -0.00043008 -0.1953 -9.7883E-05 501.1978196704158 57.692 0.33727 57.692 57.554 57.891 0 24 16 2 0 0 0 0.78849 1 32091 32091 9.3474 2.6243 1 2702200 12625 4105 8724 8898 14496 14496 -0.11787966554754803 FMYLSDSRCSG 11 Unmodified _FMYLSDSRCSG_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD;nc|ENSG00000169344|P07911-2|UMOD;nc|ENSG00000169344|P07911-4|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5167236328125 3 422.514491 1264.52164 0.48049 0.00020302 -0.62625 -0.0002646 -0.14575 -6.1582E-05 422.5141690168913 26.208 0.27705 23.257 23.112 23.39 -2.9511 44 15 4 0 0 0 0.7187 1 14361 14361 1.0136 0 1 23089000 12626 7866 8725 8899 14497 14497 -0.10003673728056128 FNCPIIEVY 9 Carbamidomethyl (C) _FNC(Carbamidomethyl (C))PIIEVY_ FNC(1)PIIEVY FNC(64)PIIEVY 0 1 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000532521.2_1_11:50375300-50375378:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7815551757812 2 577.781167 1153.54778 0.85332 0.00049303 -1.4502 -0.00083788 -0.59686 -0.00034486 577.7809484013699 83.007 0.54225 76.831 76.554 77.096 -6.1757 96 29 4 0 0 0 0.019303 2 54605 54479;54605 64.236 43.783 1 52602000 12627 4745 8726 8900 14498;14499 14499 483 -0.022850364942542 FNDDDFPN 8 Unmodified _FNDDDFPN_ 0 0 0 REV__ENSG00000115977|ENST00000409085|AAK1 REV__ENSG00000115977|ENST00000409085|AAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.1901245117188 2 492.190697 982.36684 0.17275 8.5028E-05 -0.99669 -0.00049056 -0.82394 -0.00040554 492.1899717927115 102.44 0.090782 102.44 102.4 102.49 0 6 4 2 0 0 0 0.80722 1 56503 56503 2.3027 0.24298 1 413330 + 12628 19018 8727 8901 14500 14500 -0.12504838546624342 FNDESPLGL 9 Unmodified _FNDESPLGL_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2389831542969 2 496.24019 990.465826 0.13168 6.5346E-05 -1.2764 -0.00063339 -1.1447 -0.00056805 496.2394892559007 65.415 0.32467 65.415 65.272 65.597 0 20 12 2 0 0 0 0.1773 1 36481 36481 25.399 9.5521 1 772210 12629 3230 8728 8902 14501 14501 -0.029788155817072948 FNDSDDGSG 9 Unmodified _FNDSDDGSG_ 0 0 0 REV__ENSG00000115884|ENST00000254351|SDC1 REV__ENSG00000115884|ENST00000254351|SDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.1614379882812 2 457.162136 912.309719 -0.20954 -9.5792E-05 -0.96204 -0.00043981 -1.1716 -0.0005356 457.16170391043613 56.84 0.29752 56.355 56.205 56.503 -0.48554 33 13 3 0 0 0 0.5029 1 30847 30847 7.2892 7.2892 1 4864100 + 12630 19012 8729 8903 14502 14502 -0.14994305822983733 FNDTFVHV 8 Unmodified _FNDTFVHV_ 0 0 0 ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14 ENST00000519690.1_1_5:149827146-149827347:-|nuORF ENST00000519690.1_1_5:149827146-149827347:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7359924316406 2 489.737617 977.460681 0.62824 0.00030767 -2.2164 -0.0010855 -1.5882 -0.0007778 489.73637814802413 52.596 0.25543 52.163 52.003 52.259 -0.43367 20 12 2 0 0 0 0.28922 1 28408 28408 56.541 20.497 1 3361600 12631 7208 8730 8904 14503 14503 -0.028950746536679617 FNDTFVHV 8 Unmodified _FNDTFVHV_ 0 0 0 ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14 ENST00000519690.1_1_5:149827146-149827347:-|nuORF ENST00000519690.1_1_5:149827146-149827347:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7380981445312 2 489.737617 977.460681 1.2664 0.00062019 0.46867 0.00022953 1.735 0.00084972 489.7375522675461 58.401 0.38291 52.326 52.126 52.509 -6.0745 42 20 3 0 0 0 0.10909 1 37408 37408 97.075 22.652 1 21005000 12632 7208 8730 8904 14504 14504 -0.028950746536679617 FNDYYTGIL 9 Unmodified _FNDYYTGIL_ 0 0 0 REV__ENST00000492143.5_1_7:148514271-148514505:-|nuORF REV__ENST00000492143.5_1_7:148514271-148514505:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2644653320312 2 553.263665 1104.51278 0.45023 0.00024909 1.182 0.00065395 1.6322 0.00090304 553.2641836310435 78.381 0.46806 78.381 78.172 78.64 0 45 21 3 0 0 0 0.39863 1 43603 43603 12.532 1.7076 1 1330400 + 12633 18510 8731 8905 14505 14505 -0.03529956030570247 FNDYYTGIL 9 Unmodified _FNDYYTGIL_ 0 0 0 REV__ENST00000492143.5_1_7:148514271-148514505:-|nuORF REV__ENST00000492143.5_1_7:148514271-148514505:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2651977539062 2 553.263665 1104.51278 0.41395 0.00022903 -0.72877 -0.0004032 -0.31482 -0.00017418 553.2638239861568 78.842 0.84244 78.356 77.957 78.799 -0.48595 37 27 2 0 0 0 0.41742 1 43317 43317 11.64 3.047 1 1508300 + 12634 18510 8731 8905 14506 14506 -0.03529956030570247 FNEFLPRY 8 Unmodified _FNEFLPRY_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2796020507812 2 543.274367 1084.53418 -0.6704 -0.00036421 -2.5489 -0.0013847 -3.2193 -0.0017489 543.2729665120625 30.416 0.44756 30.416 30.139 30.587 0 52 21 3 0 0 0 0.80143 1 15720 15720 5.7604 0.028577 1 7766500 + 12635 21890 8732 8906 14507 14507 -0.004705262112111086 FNEKEECNLEK 11 Unmodified _FNEKEECNLEK_ 0 0 0 REV__ENSG00000172361|ENST00000398545|CFAP53 REV__ENSG00000172361|ENST00000398545|CFAP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.8171997070312 2 691.816467 1381.61838 0.73027 0.00050521 0.77708 0.0005376 1.5074 0.0010428 691.8172175756141 35.729 0.35779 31.536 31.351 31.709 -4.1928 39 22 2 0 0 0 0.39949 1 20719 20719 21.537 0 1 13058000 + 12636 22646 8733 8907 14508 14508 -0.05716407967270243 FNENFLLEI 9 Unmodified _FNENFLLEI_ 0 0 0 ENSG00000102043|ENST00000374852|MTMR8;ENST00000462447.5_1_X:63551435-63568608:-|nuORF;nc|ENSG00000102043|Q96EF0-2|MTMR8 ENSG00000102043|ENST00000374852|MTMR8 ENSG00000102043|ENST00000374852|MTMR8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.721923828125 2 569.792589 1137.57063 0.25464 0.00014509 1.9691 0.001122 2.2237 0.0012671 569.794075969748 65.461 0.25141 65.461 65.32 65.572 0 14 9 2 0 0 0 0.21473 1 36521 36521 4.3292 0.73274 1 661040 12637 2013 8734 8908 14509 14509 0.007343058948890757 FNETFNVN 8 Unmodified _FNETFNVN_ 0 0 0 REV__nc|ENSG00000204217|Q13873-2|BMPR2 REV__nc|ENSG00000204217|Q13873-2|BMPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7227172851562 2 492.724707 983.43486 0.088475 4.3594E-05 -3.4522 -0.001701 -3.3637 -0.0016574 492.7225740328333 65.494 0.30328 65.494 65.32 65.624 0 16 11 2 0 0 0 0.79887 1 36554 36554 7.2892 0.93513 1 879090 + 12638 24146 8735 8909 14510 14510 -0.057519688959587256 FNEVDCFL 8 Carbamidomethyl (C) _FNEVDC(Carbamidomethyl (C))FL_ FNEVDC(1)FL FNEVDC(40)FL 0 1 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2283325195312 2 522.228768 1042.44298 NaN NaN NaN NaN NaN NaN NaN 63.707 1 63.221 62.721 63.721 -0.48617 0 0 0 0.50394 1 34747 34747 40.449 6.3461 1 12639 677 8736 8910 14511 14511 49 -0.0765415797084188 FNEVDCFL 8 Carbamidomethyl (C) _FNEVDC(Carbamidomethyl (C))FL_ FNEVDC(1)FL FNEVDC(44)FL 0 1 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.2987670898438 2 522.228768 1042.44298 1.1312 0.00059074 -0.097975 -5.1165E-05 1.0332 0.00053958 522.2288841037908 63.656 0.28436 57.48 57.279 57.564 -6.1757 22 15 2 0 0 0 8.7369 1 41225 41225 44.407 8.3628 1 9333000 12640 677 8736 8910 14512 14512 49 -0.0765415797084188 FNFFIENY 8 Unmodified _FNFFIENY_ 0 0 0 ENST00000394964.3_1_14:63416779-63568536:-|nuORF ENST00000394964.3_1_14:63416779-63568536:-|nuORF ENST00000394964.3_1_14:63416779-63568536:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.8242797851562 2 547.2531 1092.49165 0.64801 0.00035463 -1.4691 -0.00080398 -0.8211 -0.00044935 547.2527538704037 42.275 0.24978 37.591 37.46 37.709 -4.6846 24 15 2 0 0 0 8.7369 1 25462 25462 7.9102 1.5561 1 7937400 12641 12752 8737 8911 14513 14513 -0.05089921339435932 FNFFYFCFF 9 Unmodified _FNFFYFCFF_ 0 0 0 ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.2744750976562 2 641.275521 1280.53649 0.30102 0.00019304 -0.22152 -0.00014205 0.079506 5.0985E-05 641.2755938795019 83.42 0.23889 82.922 82.789 83.028 -0.49751 21 9 3 0 0 0 0.58466 1 45634 45634 2.3027 0.65011 1 623980 12642 13234 8738 8912 14514 14514 -0.09255813797767587 FNGEGGGF 8 Unmodified _FNGEGGGF_ 0 0 0 REV__ENST00000427514.1_1_6:48116951-48117080:-|nuORF REV__ENST00000427514.1_1_6:48116951-48117080:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8763732910156 2 392.66666 783.318768 0.32463 0.00012747 0.19147 7.5184E-05 0.5161 0.00020265 392.66671350445705 46.596 0.13034 46.596 46.501 46.631 0 7 5 2 0 0 0 8.7369 1 25447 25447 0.79363 0 1 420060 + 12643 26923 8739 8913 14515 14515 -0.08155867675986883 FNGMGCLI 8 Unmodified _FNGMGCLI_ 0 0 0 REV__ENSG00000204311|ENST00000644580|PJVK REV__ENSG00000204311|ENST00000644580|PJVK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.3910522460938 1 854.389907 853.382631 0.055422 4.7352E-05 0.48547 0.00041478 0.54089 0.00046213 854.390904102626 101.94 0.038467 101.94 101.91 101.95 0 4 2 2 0 0 0 0.80676 1 56229 56229 2.5775 0 1 229350 + 12644 24159 8740 8914 14516 14516 -0.04992546834910172 FNHFKCYF 8 Unmodified _FNHFKCYF_ 0 0 0 REV__nc|ENSG00000115353|P25103-3|TACR1 REV__nc|ENSG00000115353|P25103-3|TACR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2501220703125 2 553.249837 1104.48512 0.61574 0.00034066 0.8432 0.0004665 1.4589 0.00080715 553.2499712928125 88.631 0.2722 88.127 87.978 88.25 -0.50423 21 11 2 0 0 0 0.80143 1 48523 48523 5.7604 2.1639 1 602960 + 12645 18973 8741 8915 14517 14517 -0.06294137771806163 FNKDKAFELF 10 Unmodified _FNKDKAFELF_ 0 0 0 REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF REV__ENST00000607742.5_1_6:158532400-158537340:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8271484375 2 629.826963 1257.63937 0.433 0.00027271 0.81109 0.00051085 1.2441 0.00078356 629.8272405200314 73.017 0.28823 72.541 72.363 72.651 -0.47588 28 12 3 0 0 0 0.63399 1 39921 39921 9.3831 1.2276 1 1407000 + 12646 19338 8742 8916 14518 14518 0.02085970194548281 FNKFRKEAQ 9 Unmodified _FNKFRKEAQ_ 0 0 0 REV__ENST00000552803.5_1_12:88429407-88437530:+|nuORF REV__ENST00000552803.5_1_12:88429407-88437530:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8818054199219 3 389.88049 1166.61964 NaN NaN NaN NaN NaN NaN NaN 14.842 1 14.848 14.348 15.348 0.0057774 0 0 0 0.85798 1 7376 7376 0.23584 0 1 + 12647 19929 8743 8917 14519 14519 0.042996389744757835 FNKRSIIYL 9 Unmodified _FNKRSIIYL_ 0 0 0 REV__ENST00000262238.8_1_14:100744013-100744082:+|nuORF REV__ENST00000262238.8_1_14:100744013-100744082:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2293395996094 3 385.229119 1152.66553 1.4052 0.00054131 -0.40542 -0.00015618 0.99975 0.00038513 385.2289772208906 81.097 0.75285 74.922 74.66 75.413 -6.1757 75 42 2 0 0 0 0.27545 1 53337 53337 18.373 0.93045 1 27277000 + 12648 25016 8744 8918 14520 14520 0.09530284156721791 FNKWFQYQSY 10 Unmodified _FNKWFQYQSY_ 0 0 0 REV__ENSG00000160791|ENST00000292303|CCR5 REV__ENSG00000160791|ENST00000292303|CCR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.8280639648438 2 705.827495 1409.64044 -0.51542 -0.0003638 1.3699 0.0009669 0.85447 0.00060311 705.8284730581072 20.576 0.19427 20.576 20.451 20.646 0 41 16 4 0 0 0 0.67033 1 10323 10323 6.2058 3.2105 1 2105500 + 12649 21566 8745 8919 14521 14521 -0.047998154365131995 FNKWFQYQSY 10 Unmodified _FNKWFQYQSY_ 0 0 0 REV__ENSG00000160791|ENST00000292303|CCR5 REV__ENSG00000160791|ENST00000292303|CCR5 MSMS AL20221201_MKP_PDAC_01 4 705.8275146484375 2 705.827495 1409.64044 NaN NaN NaN NaN NaN NaN NaN 23.734 1 20.907 20.407 21.407 -2.8273 0 0 0 0.94014 1 12862 12862 6.2058 3.2105 1 + 12650 21566 8745 8919 14522 14522 -0.047998154365131995 FNLHPPLA 8 Unmodified _FNLHPPLA_ 0 0 0 REV__ENST00000353275.9_2_4:1980855-1981176:+|nuORF REV__ENST00000353275.9_2_4:1980855-1981176:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7525939941406 2 454.75307 907.491587 0.80904 0.00036792 -0.070786 -3.219E-05 0.73826 0.00033573 454.7529611387225 80.834 0.43617 74.659 74.334 74.77 -6.1757 34 23 2 0 0 0 0.72953 1 52954 52954 14.582 0 1 12960000 + 12651 25789 8746 8920 14523 14523 0.03414123451227624 FNLISSVVF 9 Unmodified _FNLISSVVF_ 0 0 0 REV__ENST00000552699.5_1_12:50156792-50156852:+|nuORF REV__ENST00000552699.5_1_12:50156792-50156852:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2867431640625 2 513.286943 1024.55933 0.46336 0.00023783 0.3996 0.00020511 0.86296 0.00044295 513.2870872389028 64.604 0.34532 64.119 63.949 64.294 -0.48512 33 15 3 0 0 0 0.36964 1 35321 35321 13.906 3.0821 1 3733200 + 12652 28729 8747 8921 14524 14524 0.04803528591378381 FNLLAVLSY 9 Unmodified _FNLLAVLSY_ 0 0 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000462375.5_1_9:134384326-134385572:+|nuORF nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2958374023438 2 520.294768 1038.57498 1.7687 0.00092026 0.15167 7.8911E-05 1.9204 0.00099917 520.2947931896955 93.189 0.68547 93.212 92.959 93.644 0.022987 60 26 3 0 0 0 0.026094 1 51873 51873 57.471 13.064 1 8616300 12653 4244 8748 8922 14525 14525 0.057238151084447964 FNLLAVLSY 9 Unmodified _FNLLAVLSY_ 0 0 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000462375.5_1_9:134384326-134385572:+|nuORF nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2947387695312 2 520.294768 1038.57498 0.37773 0.00019653 0.65369 0.00034011 1.0314 0.00053664 520.2949598365263 99.844 0.15258 93.669 93.588 93.74 -6.1757 32 11 4 0 0 0 0.019303 1 66624 66624 64.236 3.8468 1 218660000 12654 4244 8748 8922 14526 14526 0.057238151084447964 FNMYIYIFE 9 Unmodified _FNMYIYIFE_ 0 0 0 REV__nc|ENSG00000082175|P06401-4|PGR REV__nc|ENSG00000082175|P06401-4|PGR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.29052734375 2 620.291368 1238.56818 NaN NaN NaN NaN NaN NaN NaN 101.29 1 101.25 100.75 101.75 -0.04216 0 0 0 0.6306 1 56274 56274 11.64 3.047 1 + 12655 29515 8749 8923 14527 14527 -0.04155865834491124 FNNDAQLF 8 Unmodified _FNNDAQLF_ 0 0 0 REV__ENSG00000184564|ENST00000647374|SLITRK6 REV__ENSG00000184564|ENST00000647374|SLITRK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7275390625 2 484.727249 967.439946 0.53735 0.00026047 -0.6763 -0.00032782 -0.13895 -6.7352E-05 484.72697952590136 57.692 0.33734 57.692 57.532 57.869 0 26 16 2 0 0 0 0.75262 1 32073 32073 12.532 12.532 1 7367800 + 12656 23424 8750 8924 14528 14528 -0.04507665033349895 FNNSSHDP 8 Unmodified _FNNSSHDP_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 917.374755859375 1 917.374786 916.367509 0.27699 0.00025411 -1.5862 -0.0014552 -1.3092 -0.001201 917.3737097622712 71.912 0.20764 71.435 71.341 71.549 -0.47609 10 7 2 0 0 0 0.80676 1 39368 39368 2.5775 0 1 441090 + 12657 17497 8751 8925 14529 14529 -0.09401999106898984 FNNWMFSHY 9 Unmodified _FNNWMFSHY_ 0 0 0 REV__ENSG00000113552|ENST00000311337|GNPDA1 REV__ENSG00000113552|ENST00000311337|GNPDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8423767089844 3 415.843048 1244.50731 -0.65218 -0.00027121 0.48222 0.00020053 -0.16997 -7.0679E-05 415.84329805756425 17.115 0.093525 17.115 17.066 17.159 0 33 18 2 0 0 0 0.58466 1 8400 8400 1.1933 0 1 779730 + 12658 18873 8752 8926 14530 14530 -0.10515958094015332 FNNWMFSHY 9 Unmodified _FNNWMFSHY_ 0 0 0 REV__ENSG00000113552|ENST00000311337|GNPDA1 REV__ENSG00000113552|ENST00000311337|GNPDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8428955078125 3 415.843048 1244.50731 -0.64334 -0.00026753 0.50887 0.00021161 -0.13447 -5.5919E-05 415.8431599286054 17.33 0.20557 17.33 17.23 17.436 0 74 40 2 0 0 0 0.58466 1 8499 8499 1.1933 0.56652 1 818570 + 12659 18873 8752 8926 14531 14531 -0.10515958094015332 FNNWMFSHY 9 Unmodified _FNNWMFSHY_ 0 0 0 REV__ENSG00000113552|ENST00000311337|GNPDA1 REV__ENSG00000113552|ENST00000311337|GNPDA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 415.843048 1244.50731 -0.65218 -0.00027121 0.48222 0.00020053 -0.16997 -7.0679E-05 415.84329805756425 17.115 0.093525 17.115 17.066 17.159 0 0 0 NaN 1.1933 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 779730 + 12660 18873 8752 8926 -0.10515958094015332 FNPDECHL 8 Unmodified _FNPDECHL_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7054443359375 2 487.70546 973.396366 -0.15037 -7.3334E-05 1.1565 0.00056405 1.0062 0.00049072 487.7059762128621 55.24 0.27819 55.24 55.005 55.283 0 17 11 2 0 0 0 0.77907 1 30675 30675 10.183 0 1 1211200 + 12661 19661 8753 8927 14532 14532 -0.09139597802129629 FNPDECHL 8 Unmodified _FNPDECHL_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 487.70546 973.396366 -0.15037 -7.3334E-05 1.1565 0.00056405 1.0062 0.00049072 487.7059762128621 55.24 0.27819 55.24 55.005 55.283 0 0 0 NaN 10.183 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1211200 + 12662 19661 8753 8927 -0.09139597802129629 FNQVNVQVL 9 Unmodified _FNQVNVQVL_ 0 0 0 REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1979370117188 3 354.197708 1059.57129 -0.21187 -7.5044E-05 0.86092 0.00030493 0.64905 0.00022989 354.1979450527049 21.981 0.22562 22.004 21.872 22.097 0.022896 16 9 2 0 0 0 0.48152 1 11151 11151 5.2969 0.39987 1 843370 + 12663 25264 8754 8928 14533 14533 0.04389145334562272 FNQVNVQVL 9 Unmodified _FNQVNVQVL_ 0 0 0 REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 354.197708 1059.57129 -0.34102 -0.00012079 1.5335 0.00054317 1.1925 0.00042238 354.19817818536353 22.107 0.16472 22.107 22.019 22.183 0 0.070906 0.00040771 NaN 5.2969 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 691620 + 12664 25264 8754 8928 0.04389145334562272 FNQVNVQVL 9 Unmodified _FNQVNVQVL_ 0 0 0 REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF REV__ENST00000295770.3_1_3:31677660-31677702:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 354.197708 1059.57129 -0.21187 -7.5044E-05 0.86092 0.00030493 0.64905 0.00022989 354.1979450527049 21.981 0.22562 22.004 21.872 22.097 0.022896 -0.032277 -0.00030698 NaN 5.2969 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 843370 + 12665 25264 8754 8928 0.04389145334562272 FNQYVKHQ 8 Unmodified _FNQYVKHQ_ 0 0 0 REV__ENSG00000225830|ENST00000355832|ERCC6 REV__ENSG00000225830|ENST00000355832|ERCC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8065795898438 2 532.269616 1062.52468 NaN NaN NaN NaN NaN NaN NaN 27.9 1 27.93 27.43 28.43 0.029564 0 0 0 0.97444 1 14513 14513 2.5775 0 1 + 12666 24388 8755 8929 14534 14534 -0.004082944967194635 FNREEKLF 8 Unmodified _FNREEKLF_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7854614257812 2 541.785099 1081.55564 NaN NaN NaN NaN NaN NaN NaN 47.853 1 47.815 47.315 48.315 -0.038643 0 0 0 0.97348 1 25793 25793 5.7604 0 1 12667 10649 8756 8930 14535 14535 0.018128588175159166 FNREQFYKF 9 Unmodified _FNREQFYKF_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.818115234375 2 639.81693 1277.61931 0.018519 1.1849E-05 -0.42421 -0.00027142 -0.40569 -0.00025957 639.816946612109 81.413 0.14314 81.413 81.347 81.491 0 9 5 2 0 0 0 0.58865 1 45213 45213 2.0598 0 1 559510 12668 4736 8757 8931 14536 14536 -0.00839780745400276 FNRSVTQSPVA 11 Unmodified _FNRSVTQSPVA_ 0 0 0 REV__ENSG00000198765|ENST00000369522|SYCP1 REV__ENSG00000198765|ENST00000369522|SYCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3184204101562 2 603.317294 1204.62004 -0.36145 -0.00021807 2.2702 0.0013697 1.9088 0.0011516 603.3188771514396 52.226 0.3159 52.226 52.06 52.376 0 26 13 3 0 0 0 0.61059 1 28869 28869 10.8 0.72558 1 2920900 + 12669 24055 8758 8932 14537 14537 0.025910139036795954 FNRSVTQSPVA 11 Unmodified _FNRSVTQSPVA_ 0 0 0 REV__ENSG00000198765|ENST00000369522|SYCP1 REV__ENSG00000198765|ENST00000369522|SYCP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 603.317294 1204.62004 -0.36145 -0.00021807 2.2702 0.0013697 1.9088 0.0011516 603.3188771514396 52.226 0.3159 52.226 52.06 52.376 0 0 0 NaN 10.8 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2920900 + 12670 24055 8758 8932 0.025910139036795954 FNRTNSPGF 9 Unmodified _FNRTNSPGF_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2523803710938 2 520.251423 1038.48829 -0.061505 -3.1998E-05 0.34398 0.00017896 0.28248 0.00014696 520.2519728685334 38.133 0.32291 37.862 37.719 38.042 -0.27133 47 14 5 0 0 0 0.55144 1 20153 20153 4.3292 0 1 7459000 12671 5187 8759 8933 14538 14538 -0.029411713934450745 FNSFGSGPG 9 Unmodified _FNSFGSGPG_ 0 0 0 REV__ENSG00000100354|ENST00000454349|TNRC6B REV__ENSG00000100354|ENST00000454349|TNRC6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.3824462890625 1 869.378808 868.371532 1.0559 0.00091797 3.2497 0.0028252 4.3056 0.0037432 869.3811560698276 101.16 0.12318 94.983 94.923 95.046 -6.1757 13 7 2 0 0 0 0.094149 1 67819 67819 34.402 0.29928 1 52337000 + 12672 18050 8760 8934 14539 14539 -0.06791909613173175 FNSGFRDDF 9 Unmodified _FNSGFRDDF_ 0 0 0 ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.2421875 2 552.740888 1103.46722 1.1489 0.00063506 0.91457 0.00050552 2.0635 0.0011406 553.2411981907572 20.306 0.23042 17.613 17.571 17.801 -2.693 17 12 2 0 0 0 0.20139 1 10872 10872 6.7232 4.4204 1 2264600 12673 2451 8761 8935 14540 14540 -0.08037181492954915 FNSGYPLA 8 Unmodified _FNSGYPLA_ 0 0 0 ENST00000380172.8_1_9:21863894-21863996:+|nuORF ENST00000380172.8_1_9:21863894-21863996:+|nuORF ENST00000380172.8_1_9:21863894-21863996:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827209472656 2 434.713611 867.412668 0.17794 7.7354E-05 0.49552 0.00021541 0.67346 0.00029276 434.7136839897512 64.202 0.28077 64.202 63.997 64.277 0 19 11 2 0 0 0 8.7369 1 35762 35762 9.3474 3.587 1 917710 12674 12591 8762 8936 14541 14541 -0.02634148573724815 FNSGYPLA 8 Unmodified _FNSGYPLA_ 0 0 0 ENST00000380172.8_1_9:21863894-21863996:+|nuORF ENST00000380172.8_1_9:21863894-21863996:+|nuORF ENST00000380172.8_1_9:21863894-21863996:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822937011719 2 434.713611 867.412668 0.5128 0.00022292 -0.74529 -0.00032399 -0.23249 -0.00010107 434.7133071170754 64.672 0.25867 64.187 64.014 64.273 -0.48512 16 11 2 0 0 0 8.7369 1 35297 35297 9.3474 3.587 1 797030 12675 12591 8762 8936 14542 14542 -0.02634148573724815 FNSLGYYMF 9 Unmodified _FNSLGYYMF_ 0 0 0 REV__nc|ENSG00000112697|Q9NV96-2|TMEM30A REV__nc|ENSG00000112697|Q9NV96-2|TMEM30A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.7947998046875 2 571.254785 1140.49502 1.5295 0.00087371 0.50024 0.00028576 2.0297 0.0011595 571.2546715861776 64.053 0.44128 57.878 57.669 58.11 -6.1757 37 23 2 0 0 0 0.17718 1 41581 41581 20.454 9.6297 1 38157000 + 12676 18830 8763 8937 14543 14543 -0.06960994557084632 FNTSPNLALF 10 Unmodified _FNTSPNLALF_ 0 0 0 ENST00000484396.1_1_20:24988400-24990223:-|nuORF ENST00000484396.1_1_20:24988400-24990223:-|nuORF ENST00000484396.1_1_20:24988400-24990223:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.2936401367188 2 562.292756 1122.57096 0.68742 0.00038653 1.0289 0.00057856 1.7164 0.00096509 562.2933099518202 75.319 0.24845 75.365 75.224 75.472 0.045959 19 11 2 0 0 0 0.33553 1 41542 41542 25.399 2.663 1 2066500 12677 14152 8764 8938 14544 14544 0.014577256146822037 FNWIWRYHF 9 Unmodified _FNWIWRYHF_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;nc|ENSG00000105438|P24390-2|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.8930053710938 3 456.89273 1367.65636 -0.015649 -7.15E-06 -1.349 -0.00061637 -1.3647 -0.00062352 456.89248929236 25.255 0.14379 25.255 25.202 25.346 0 11 6 2 0 0 0 0.58466 1 12967 12967 1.1933 0.49568 1 918780 12678 2322 8765 8939 14545 14545 -0.012760644089894413 FNYGVCVMRM 10 Unmodified _FNYGVCVMRM_ 0 0 0 ENSG00000070915|ENST00000563236|SLC12A3;nc|ENSG00000070915|P55017-3|SLC12A3;nc|ENSG00000070915|P55017-2|SLC12A3 ENSG00000070915|ENST00000563236|SLC12A3 ENSG00000070915|ENST00000563236|SLC12A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1855773925781 3 407.18554 1218.53479 -0.7026 -0.00028609 1.3678 0.00055695 0.66522 0.00027087 407.18597899649177 48.725 0.18965 48.725 48.618 48.808 0 21 8 3 0 0 0 0.7191 1 26796 26796 0.77653 0.078866 1 902480 12679 1045 8766 8940 14546 14546 -0.06573514149681614 FPAAIEHTI 9 Unmodified _FPAAIEHTI_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7694091796875 2 499.768917 997.523281 0.64692 0.00032331 -0.25961 -0.00012975 0.3873 0.00019356 499.76873128945255 50.823 0.21501 50.823 50.744 50.959 0 23 13 2 0 0 0 0.016184 1 28018 28018 67.344 35.227 1 6282200 12680 601 8767 8941 14547 14547 0.024420714145321654 FPAAIEHTI 9 Unmodified _FPAAIEHTI_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7695007324219 2 499.768917 997.523281 -0.30076 -0.00015031 0.48207 0.00024092 0.18132 9.0616E-05 499.7692743955758 51.341 0.19089 50.928 50.798 50.988 -0.41351 20 9 3 0 0 0 0.0010099 1 27641 27641 139.54 88.689 1 5592700 12681 601 8767 8941 14548 14548 0.024420714145321654 FPAAIEHTIQW 11 Unmodified _FPAAIEHTIQW_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.837646484375 2 656.837862 1311.66117 0.92386 0.00060683 0.17625 0.00011577 1.1001 0.00072259 656.8373036465389 70.275 0.27022 70.31 70.193 70.463 0.035515 24 12 3 0 0 0 0.00098399 1 38692 38692 83.429 60.692 1 2422800 12682 601 8768 8942 14549 14549 0.017807749431312914 FPAAIEHTIQW 11 Unmodified _FPAAIEHTIQW_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 656.837862 1311.66117 0.43375 0.0002849 0.26244 0.00017238 0.69619 0.00045728 656.8369912230453 70.866 0.060768 70.389 70.35 70.411 -0.47736 0.039221 9.8959E-05 NaN 83.429 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 493130 12683 601 8768 8942 0.017807749431312914 FPAAPAPKM 9 Oxidation (M) _FPAAPAPKM(Oxidation (M))_ FPAAPAPKM(1) FPAAPAPKM(55) 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2479248046875 2 473.246763 944.478974 -0.2199 -0.00010406 0.20748 9.8187E-05 -0.01242 -5.8778E-06 473.24683604661743 29.055 0.2795 29.055 28.923 29.202 0 34 13 3 0 0 0 0.031062 2 14999 14999;15105 54.774 28.432 1 5785900 12684 7051 8769 8943 14550;14551 14550 1209 0.0045134399667858816 FPAAPAPKM 9 Oxidation (M) _FPAAPAPKM(Oxidation (M))_ FPAAPAPKM(1) FPAAPAPKM(64) 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2469482421875 2 473.246763 944.478974 0.70503 0.00033365 -0.69814 -0.00033039 0.0068883 3.2599E-06 473.24645000125986 29.053 0.35394 28.991 28.81 29.164 -0.062159 45 15 4 0 0 0 0.019303 2 14965 14965;15063 64.236 23.788 1 35525000 12685 7051 8769 8943 14552;14553 14552 1209 0.0045134399667858816 FPAAPAPKM 9 Oxidation (M) _FPAAPAPKM(Oxidation (M))_ FPAAPAPKM(1) FPAAPAPKM(71) 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2471008300781 2 473.246763 944.478974 0.021438 1.0145E-05 0.85849 0.00040628 0.87992 0.00041642 473.247045522362 28.915 0.32521 28.945 28.777 29.102 0.030106 24 13 3 0 0 0 0.013323 1 15065 15065 71.134 39.017 1 6355100 12686 7051 8769 8943 14554 14554 1209 0.0045134399667858816 FPAAPAPKM 9 Oxidation (M) _FPAAPAPKM(Oxidation (M))_ FPAAPAPKM(1) FPAAPAPKM(71) 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2471923828125 2 473.246763 944.478974 0.49115 0.00023244 0.3078 0.00014567 0.79896 0.0003781 473.24646845515826 32.972 0.57663 29.116 28.776 29.352 -3.8562 64 35 3 0 0 0 0.013323 2 18809 18809;18931 71.134 39.017 1 92898000 12687 7051 8769 8943 14555;14556 14555 1209 0.0045134399667858816 FPAAPAPKM 9 Unmodified _FPAAPAPKM_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2501525878906 2 465.249306 928.484059 -0.44992 -0.00020933 0.1792 8.3371E-05 -0.27073 -0.00012596 465.24944722770016 41.701 0.14619 41.394 41.308 41.454 -0.30682 11 6 2 0 0 0 0.019303 1 22137 22137 64.236 37.895 1 3201100 12688 7051 8769 8944 14557 14557 0.01695647859287419 FPAAPAPKM 9 Unmodified _FPAAPAPKM_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7523193359375 2 465.249306 928.484059 0.70708 0.00032897 -0.013279 -6.1781E-06 0.6938 0.00032279 465.2494111541945 47.109 0.55005 42.029 41.768 42.318 -5.0805 118 49 3 0 0 0 0.012148 3 29052 29052;29182;29310 74.423 48.081 1 121840000 12689 7051 8769 8944 14558;14559;14560 14558 0.01695647859287419 FPAAPAPKM 9 Unmodified _FPAAPAPKM_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 465.249306 928.484059 -0.041921 -1.9504E-05 0.32555 0.00015146 0.28363 0.00013196 465.24955323909757 41.413 0.18826 41.411 41.279 41.467 -0.0017929 0.008502 4.7042E-05 NaN 64.236 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2645200 12690 7051 8769 8944 0.01695647859287419 FPAAPFELG 9 Unmodified _FPAAPFELG_ 0 0 0 REV__nc|ENSG00000164867|P29474-3|NOS3 REV__nc|ENSG00000164867|P29474-3|NOS3 MSMS AL20221201_MKP_PDAC_01 4 474.7470092773438 2 474.744911 947.475269 NaN NaN NaN NaN NaN NaN NaN 33.123 1 29.267 28.767 29.767 -3.8562 0 0 0 0.40995 1 18967 18967 19.439 3.6708 1 + 12691 29753 8770 8945 14561 14561 -0.000570025055253609 FPAAPIPTL 9 Unmodified _FPAAPIPTL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7715454101562 2 463.770929 925.527304 0.3819 0.00017711 1.275 0.00059131 1.6569 0.00076842 463.7714379827546 83.406 0.47828 82.908 82.672 83.15 -0.49751 44 19 3 0 0 0 0.068777 2 45605 45605;45704 40.449 14.107 1 1017800 12692 10905 8771 8946 14562;14563 14562 0.06156160908221864 FPAAPIPTL 9 Unmodified _FPAAPIPTL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.771484375 2 463.770929 925.527304 0.98734 0.0004579 0.35323 0.00016382 1.3406 0.00062172 463.7710501134963 82.751 0.4665 82.813 82.582 83.049 0.062004 41 17 3 0 0 0 0.023761 2 45746 45746;45845 59.795 19.347 1 5500800 12693 10905 8771 8946 14564;14565 14564 0.06156160908221864 FPAAPIPTL 9 Unmodified _FPAAPIPTL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7717590332031 2 463.770929 925.527304 1.2007 0.00055683 0.37149 0.00017229 1.5721 0.00072912 463.77111903257605 90.869 0.76892 84.693 84.307 85.076 -6.1757 98 45 3 0 0 0 0.0089973 4 59980 59852;59980;60112;60251 86.121 39.2 1 32777000 12694 10905 8771 8946 14566;14567;14568;14569 14567 0.06156160908221864 FPACPQRSY 9 Carbamidomethyl (C) _FPAC(Carbamidomethyl (C))PQRSY_ FPAC(1)PQRSY FPAC(60)PQRSY 0 1 0 ENSG00000162972|ENST00000392290|MAIP1 ENSG00000162972|ENST00000392290|MAIP1 ENSG00000162972|ENST00000392290|MAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2611694335938 2 563.260933 1124.50731 1.0899 0.00061388 -0.080974 -4.561E-05 1.0089 0.00056827 563.2609043202042 34.333 0.44958 30.247 30.032 30.482 -4.0862 37 25 2 0 0 0 0.023481 1 19727 19727 60.074 41.939 1 11683000 12695 6936 8772 8947 14570 14570 680 -0.04995958094036723 FPACVSLVL 9 Carbamidomethyl (C) _FPAC(Carbamidomethyl (C))VSLVL_ FPAC(1)VSLVL FPAC(50)VSLVL 0 1 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2755126953125 2 503.275521 1004.53649 1.0717 0.00053937 0.35014 0.00017622 1.4219 0.00071559 503.2757394768926 99.434 0.29598 93.258 93.028 93.324 -6.1757 33 18 3 0 0 0 0.040472 1 66179 66179 49.669 15.566 1 35076000 12696 2944 8773 8948 14571 14571 302 0.034401862022491514 FPADEASIQAL 11 Unmodified _FPADEASIQAL_ 0 0 0 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 ENSG00000180423|ENST00000326737|HARBI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2937622070312 2 581.292953 1160.57135 0.2233 0.0001298 -2.2685 -0.0013187 -2.0452 -0.0011889 581.2929922347463 63.493 0.92146 63.493 63.053 63.974 0 77 42 3 0 0 0 0.28407 2 35508 35299;35508 27.629 17.555 1 2116600 12697 8900 8774 8949 14572;14573 14573 -0.0025089945609124698 FPAEDVFL 8 Unmodified _FPAEDVFL_ 0 0 0 ENST00000434030.1_1_3:50311077-50311539:+|nuORF;ENST00000419007.5_1_3:50311077-50311539:+|nuORF ENST00000434030.1_1_3:50311077-50311539:+|nuORF ENST00000434030.1_1_3:50311077-50311539:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2370910644531 2 469.236919 936.459284 0.42068 0.0001974 -1.9403 -0.00091045 -1.5196 -0.00071305 469.2360713490572 76.734 0.35922 76.734 76.514 76.874 0 22 14 2 0 0 0 0.80311 1 42611 42611 4.756 0.42677 1 491870 12698 13083 8775 8950 14574 14574 -0.01148708742425697 FPAEGPDPEY 10 Unmodified _FPAEGPDPEY_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2422485351562 2 561.242929 1120.47131 NaN NaN NaN NaN NaN NaN NaN 45.56 1 45.56 45.06 46.06 0 0 0 0 0.034324 1 24845 24845 61.357 37.337 1 12699 1432 8776 8951 14575 14575 -0.08411136789891316 FPAEGPDPEY 10 Unmodified _FPAEGPDPEY_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2453002929688 2 561.242929 1120.47131 NaN NaN NaN NaN NaN NaN NaN 46.039 1 46.039 45.539 46.539 0 0 0 0 0.28434 1 25140 25140 37.974 23.392 1 12700 1432 8776 8951 14576 14576 -0.08411136789891316 FPAEGPDPEY 10 Unmodified _FPAEGPDPEY_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.243896484375 2 561.242929 1120.47131 0.91597 0.00051408 0.49429 0.00027742 1.4103 0.0007915 561.2429492178165 53.299 0.57926 47.495 47.179 47.759 -5.8042 61 35 2 0 0 0 0.017277 1 33514 33514 78.149 57.696 1 22689000 12701 1432 8776 8951 14577 14577 -0.08411136789891316 FPAEGVESAL 10 Unmodified _FPAEGVESAL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2562255859375 2 510.25584 1018.49713 NaN NaN NaN NaN NaN NaN NaN 58.531 1 58.531 58.031 59.031 0 0 0 0 0.060005 1 32591 32591 54.774 22.468 1 12702 8786 8777 8952 14578 14578 -0.0113824254760857 FPAEGVESAL 10 Unmodified _FPAEGVESAL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2559509277344 2 510.25584 1018.49713 NaN NaN NaN NaN NaN NaN NaN 58.718 1 58.718 58.218 59.218 0 0 0 0 0.38297 1 32697 32697 32.305 15.219 1 12703 8786 8777 8952 14579 14579 -0.0113824254760857 FPAEGVESAL 10 Unmodified _FPAEGVESAL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2968444824219 2 510.25584 1018.49713 0.30358 0.0001549 -2.1634 -0.0011039 -1.8598 -0.00094896 510.2547868789165 66.682 0.3662 60.506 60.214 60.58 -6.1757 29 20 2 0 0 0 0.22327 1 43279 43279 13.906 0 1 17107000 12704 8786 8777 8952 14580 14580 -0.0113824254760857 FPAEKESEW 9 Unmodified _FPAEKESEW_ 0 0 0 ENST00000539677.1_1_16:12874994-12897657:-|nuORF;nc|ENSG00000103381|Q9BRF8-3|CPPED1;nc|ENSG00000103381|Q9BRF8-2|CPPED1;ENSG00000103381|ENST00000381774|CPPED1 ENST00000539677.1_1_16:12874994-12897657:-|nuORF ENST00000539677.1_1_16:12874994-12897657:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.759033203125 2 561.758746 1121.50294 0.61906 0.00034776 0.21958 0.00012335 0.83864 0.00047111 561.7589689253712 38.916 1.0953 38.916 38.458 39.553 0 96 51 2 0 0 0 0.013041 4 20739 20630;20739;20862;20972 71.922 35.795 1 10305000 12705 2136 8778 8953 14581;14582;14583;14584 14582 -0.052951440359720436 FPAEKESEW 9 Unmodified _FPAEKESEW_ 0 0 0 ENST00000539677.1_1_16:12874994-12897657:-|nuORF;nc|ENSG00000103381|Q9BRF8-3|CPPED1;nc|ENSG00000103381|Q9BRF8-2|CPPED1;ENSG00000103381|ENST00000381774|CPPED1 ENST00000539677.1_1_16:12874994-12897657:-|nuORF ENST00000539677.1_1_16:12874994-12897657:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.759033203125 2 561.758746 1121.50294 0.76908 0.00043204 1.0627 0.00059697 1.8318 0.001029 561.7586810806582 44.152 0.99472 39.3 38.721 39.715 -4.852 198 67 4 0 0 0 0.011671 3 27102 26820;26965;27102 75.761 39.634 1 46581000 12706 2136 8778 8953 14585;14586;14587 14587 -0.052951440359720436 FPAEKGQLF 9 Unmodified _FPAEKGQLF_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2;ENST00000487235.5_1_1:153921840-153927447:-|nuORF ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7770385742188 2 518.776742 1035.53893 0.43973 0.00022812 -0.76644 -0.00039761 -0.32671 -0.00016949 518.7768343132701 52.319 1.0619 51.885 51.55 52.612 -0.43367 139 53 4 0 0 0 0.033587 4 28310 28197;28310;28416;28527 53.404 21.099 1 7332400 12707 6748 8779 8954 14588;14589;14590;14591 14589 0.022583579315551106 FPAEKGQLF 9 Unmodified _FPAEKGQLF_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2;ENST00000487235.5_1_1:153921840-153927447:-|nuORF ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7771606445312 2 518.776742 1035.53893 0.62452 0.00032398 -0.70958 -0.00036812 -0.085069 -4.4132E-05 518.7765636484463 57.969 1.1328 51.942 51.48 52.612 -6.0275 108 62 2 0 0 0 0.013041 4 36910 36910;37048;37189;37320 71.922 23.576 1 47029000 12708 6748 8779 8954 14592;14593;14594;14595 14592 0.022583579315551106 FPAEPLEL 8 Unmodified _FPAEPLEL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 915.4837646484375 1 915.482211 914.474934 0.061185 5.6014E-05 0.3844 0.00035191 0.44559 0.00040793 915.4823289276912 76.732 0.62518 76.732 76.341 76.966 0 70 29 3 0 0 0 0.079151 3 42600 42499;42600;42695 109.63 38.914 1 2893400 12709 2632 8780 8955 14596;14597;14598 14597 0.0142757777460929 FPAEPLEL 8 Unmodified _FPAEPLEL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2452697753906 2 458.244744 914.474934 0.52432 0.00024027 0.19224 8.8094E-05 0.71656 0.00032836 458.2447513461375 76.674 0.53673 76.674 76.315 76.852 0 38 21 2 0 0 0 0.50586 2 42669 42568;42669 34.187 13.316 1 1682400 12710 2632 8780 8955 14599;14600 14600 0.0142757777460929 FPAEPLEL 8 Unmodified _FPAEPLEL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 915.4818725585938 1 915.482211 914.474934 0.076845 7.035E-05 -0.047239 -4.3247E-05 0.029606 2.7103E-05 915.4818807724631 84.486 0.53207 78.31 78.05 78.582 -6.1757 45 30 2 0 0 0 0.054917 3 55459 55459;55584;55720 137.59 70.241 1 11386000 12711 2632 8780 8955 14601;14602;14603 14601 0.0142757777460929 FPAEQVDDL 9 Unmodified _FPAEQVDDL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.244140625 2 517.245472 1032.47639 NaN NaN NaN NaN NaN NaN NaN 54.477 1 54.477 53.977 54.977 0 0 0 0 0.032808 1 30247 30247 65.235 40.244 1 12712 2666 8781 8956 14604 14604 -0.03854832927299867 FPAEQVDDL 9 Unmodified _FPAEQVDDL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2457885742188 2 517.245472 1032.47639 NaN NaN NaN NaN NaN NaN NaN 54.661 1 54.661 54.161 55.161 0 0 0 0 0.083082 1 30349 30349 47.749 24.6 1 12713 2666 8781 8956 14605 14605 -0.03854832927299867 FPAEQVDDL 9 Unmodified _FPAEQVDDL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.245361328125 2 517.245472 1032.47639 NaN NaN NaN NaN NaN NaN NaN 54.881 1 54.881 54.381 55.381 0 0 0 0 0.12343 1 30478 30478 39.95 16.801 1 12714 2666 8781 8956 14606 14606 -0.03854832927299867 FPAEQVDDL 9 Unmodified _FPAEQVDDL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.246337890625 2 517.245472 1032.47639 1.8101 0.00093625 -0.36302 -0.00018777 1.447 0.00074848 517.2457325684077 62.848 0.8821 56.672 56.174 57.056 -6.1757 69 45 2 0 0 0 0.028475 1 40585 40585 56.177 30.778 1 13206000 12715 2666 8781 8956 14607 14607 -0.03854832927299867 FPAETVEL 8 Unmodified _FPAETVEL_ 0 0 0 nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-2|ITPRID2 nc|ENSG00000138434|P28290-2|ITPRID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 905.4553833007812 1 905.461475 904.454199 0.014239 1.2893E-05 -2.5182 -0.0022801 -2.5039 -0.0022672 905.4593765392463 62.619 0.26806 62.619 62.506 62.774 0 16 11 2 0 0 0 0.74163 1 34879 34879 13.508 4.1604 1 397460 12716 5054 8782 8957 14608 14608 -0.0018501260504990569 FPAFSHTFQKE 11 Unmodified _FPAFSHTFQKE_ 0 0 0 ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.8261108398438 2 669.827495 1337.64044 -0.23376 -0.00015658 -0.42493 -0.00028463 -0.65869 -0.00044121 669.8271394693726 41.573 0.28823 41.269 41.09 41.378 -0.30304 19 12 2 0 0 0 0.24216 1 22005 22005 29.841 9.387 1 7337000 12717 11253 8783 8958 14609 14609 -0.014878154365533192 FPAFSHTFQKE 11 Unmodified _FPAFSHTFQKE_ 0 0 0 ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.8283081054688 2 669.827495 1337.64044 0.27425 0.0001837 -0.54517 -0.00036517 -0.27092 -0.00018147 669.8270823542668 41.266 0.28647 41.264 41.115 41.402 -0.0017891 32 13 3 0 0 0 0.58219 1 22043 22043 12.241 2.8575 1 3459800 12718 11253 8783 8958 14610 14610 -0.014878154365533192 FPAFSHTFQKE 11 Unmodified _FPAFSHTFQKE_ 0 0 0 ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF ENST00000261813.8_1_5:139624899-139625277:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.8261108398438 2 669.827495 1337.64044 0.15408 0.0001032 -0.58303 -0.00039053 -0.42895 -0.00028732 669.8267969576397 46.548 0.1121 41.467 41.383 41.495 -5.0805 26 16 2 0 0 0 0.178 1 28739 28739 33.445 2.8084 1 49431000 12719 11253 8783 8958 14611 14611 -0.014878154365533192 FPAFVWTL 8 Unmodified _FPAFVWTL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.5228881835938 1 980.524016 979.516739 0.54688 0.00053623 0.49507 0.00048542 1.0419 0.0010217 980.5235361980568 101.77 0.05542 95.592 95.574 95.63 -6.1757 7 5 2 0 0 0 0.16583 1 68325 68325 82.939 33.271 1 18152000 12720 6888 8784 8959 14612 14612 0.026161782538110856 FPAGILQAPF 10 Unmodified _FPAGILQAPF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2 nc|ENSG00000117298|P42892-3|ECE1;ENST00000490579.1_1_3:183995094-184008674:+|nuORF nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7953491210938 2 530.794935 1059.57532 1.8522 0.00098315 0.60955 0.00032355 2.4618 0.0013067 530.7948536257413 93.456 1.0893 93.479 93.132 94.221 0.022987 119 42 4 0 0 0 0.039183 3 52030 51926;52030;52140 63.563 29.46 1 8089000 12721 3293;5672 8785 8960 14613;14614;14615 14614 0.04791234828257984 FPAGILQAPF 10 Unmodified _FPAGILQAPF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2 nc|ENSG00000117298|P42892-3|ECE1;ENST00000490579.1_1_3:183995094-184008674:+|nuORF nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7947998046875 2 530.794935 1059.57532 0.90472 0.00048022 0.4935 0.00026195 1.3982 0.00074217 530.7952044274472 99.97 0.31937 93.795 93.677 93.996 -6.1757 46 21 3 0 0 0 0.1131 1 66702 66702 44.407 17.523 1 91424000 12722 3293;5672 8785 8960 14616 14616 0.04791234828257984 FPAGIYDTKY 10 Unmodified _FPAGIYDTKY_ 0 0 0 ENST00000471337.5_1_1:45805924-45808422:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000471337.5_1_1:45805924-45808422:+|nuORF ENST00000471337.5_1_1:45805924-45808422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7936401367188 2 587.792589 1173.57063 0.17081 0.0001004 -2.2849 -0.001343 -2.1141 -0.0012426 587.7929400045981 50.164 0.40139 50.164 50.075 50.477 0 35 18 3 0 0 0 0.30444 1 27626 27626 27.223 12.385 1 1688200 12723 4449 8786 8961 14617 14617 -0.009216941051590766 FPAGIYDTKY 10 Unmodified _FPAGIYDTKY_ 0 0 0 ENST00000471337.5_1_1:45805924-45808422:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000471337.5_1_1:45805924-45808422:+|nuORF ENST00000471337.5_1_1:45805924-45808422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7926025390625 2 587.792589 1173.57063 0.55691 0.00032735 0.21209 0.00012466 0.769 0.00045201 587.7927400887711 50.768 0.93816 50.355 49.992 50.93 -0.41351 112 46 3 0 0 0 0.014503 4 27207 27207;27310;27415;27518 80.676 62.53 1 14130000 12724 4449 8786 8961 14618;14619;14620;14621 14618 -0.009216941051590766 FPAGIYDTKY 10 Unmodified _FPAGIYDTKY_ 0 0 0 ENST00000471337.5_1_1:45805924-45808422:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000471337.5_1_1:45805924-45808422:+|nuORF ENST00000471337.5_1_1:45805924-45808422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7927856445312 2 587.792589 1173.57063 1.2858 0.00075579 -0.41223 -0.00024231 0.87357 0.00051348 587.7921698010663 50.43 0.68597 50.381 50.066 50.752 -0.048828 57 33 2 0 0 0 0.11654 2 27296 27200;27296 43.982 30.076 1 1942600 12725 4449 8786 8961 14622;14623 14623 -0.009216941051590766 FPAGIYDTKY 10 Unmodified _FPAGIYDTKY_ 0 0 0 ENST00000471337.5_1_1:45805924-45808422:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000471337.5_1_1:45805924-45808422:+|nuORF ENST00000471337.5_1_1:45805924-45808422:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7929077148438 2 587.792589 1173.57063 0.5706 0.00033539 -0.0027883 -1.6389E-06 0.56781 0.00033375 587.7926825657855 56.492 0.91636 50.515 50.156 51.073 -5.9769 134 53 4 0 0 0 0.00019901 4 36110 35851;35973;36110;36238 117.76 88.679 1 98633000 12726 4449 8786 8961 14624;14625;14626;14627 14626 -0.009216941051590766 FPAGKVPAF 9 Unmodified _FPAGKVPAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2624206542969 2 467.263271 932.511988 0.39937 0.00018661 -0.074281 -3.4709E-05 0.32508 0.0001519 467.2630279695545 53.728 0.72315 53.276 52.859 53.582 -0.45173 78 35 3 0 0 0 0.023164 2 28980 28980;29090 60.39 35.716 1 4633200 12727 10781 8787 8962 14628;14629 14628 0.043032941110254797 FPAGKVPAF 9 Unmodified _FPAGKVPAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2633666992188 2 467.263271 932.511988 -0.14653 -6.8469E-05 0.25506 0.00011918 0.10852 5.071E-05 467.2632796218738 53.435 1.2195 53.371 52.826 54.045 -0.063423 183 67 4 0 0 0 0.016184 5 28855 28744;28855;28960;29065;29175 67.344 40.951 1 69499000 12728 10781 8787 8962 14630;14631;14632;14633;14634 14631 0.043032941110254797 FPAGKVPAF 9 Unmodified _FPAGKVPAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.263916015625 2 467.263271 932.511988 1.0972 0.0005127 -0.35606 -0.00016637 0.74117 0.00034632 467.26303523893205 59.231 1.0258 53.157 52.618 53.644 -6.0745 177 56 4 0 0 0 0.016184 5 37707 37707;37835;37960;38095;38223 67.344 38.857 1 297610000 12729 10781 8787 8962 14635;14636;14637;14638;14639 14635 0.043032941110254797 FPAGSTLIF 9 Unmodified _FPAGSTLIF_ 0 0 0 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7628173828125 2 476.760561 951.506569 1.0926 0.00052089 1.5536 0.00074071 2.6462 0.0012616 476.7608984839058 94.773 0.86892 88.597 88.1 88.969 -6.1757 63 49 2 0 0 0 0.068777 1 62582 62582 40.449 4.4044 1 7091400 12730 5493 8788 8963 14640 14640 0.02887570528582728 FPAGSTLIFY 10 Unmodified _FPAGSTLIFY_ 0 0 0 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1;ENSG00000169905|ENST00000609928|TOR1AIP2 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.293212890625 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 89.44 1 89.488 88.988 89.988 0.047852 0 0 0 0.049482 1 49756 49756 57.471 21.344 1 12731 5493 8789 8964 14641 14641 0.017195112458011863 FPAGSVHVNVY 11 Unmodified _FPAGSVHVNVY_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3021850585938 2 595.303655 1188.59276 0.20777 0.00012368 -0.3673 -0.00021865 -0.15953 -9.4969E-05 595.3034183447643 56.361 0.75424 50.384 50.036 50.79 -5.9769 92 43 3 0 0 0 1.3203E-08 3 35911 35768;35911;36039 107.1 74.314 1 43177000 12732 6233 8790 8965 14642;14643;14644 14643 0.006005303632719006 FPAGSVHVNVY 11 Unmodified _FPAGSVHVNVY_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 595.303655 1188.59276 1.095 0.00065186 0.78137 0.00046515 1.8764 0.001117 595.3059245327812 50.38 0.1628 50.331 50.21 50.373 -0.048828 -0.026674 0.0013465 NaN 107.1 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 503710 12733 6233 8790 8965 0.006005303632719006 FPAHILDCL 9 Carbamidomethyl (C) _FPAHILDC(Carbamidomethyl (C))L_ FPAHILDC(1)L FPAHILDC(64)L 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2767944335938 2 543.276052 1084.53755 0.25075 0.00013623 -0.005755 -3.1265E-06 0.24499 0.0001331 543.2762091567714 71.125 0.3792 70.648 70.459 70.839 -0.47735 51 16 4 0 0 0 0.019979 2 38878 38878;38975 63.563 33.338 1 15269000 12734 8367 8791 8966 14645;14646 14645 809 -0.001335994288638176 FPAHILDCL 9 Carbamidomethyl (C) _FPAHILDC(Carbamidomethyl (C))L_ FPAHILDC(1)L FPAHILDC(54)L 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2762451171875 2 543.276052 1084.53755 0.86298 0.00046884 -0.35159 -0.00019101 0.51139 0.00027783 543.2761325597403 70.562 0.34114 70.598 70.444 70.785 0.035507 42 15 4 0 0 0 0.03327 1 38814 38814 53.576 15.424 1 7914300 12735 8367 8791 8966 14647 14647 809 -0.001335994288638176 FPAHILDCL 9 Carbamidomethyl (C) _FPAHILDC(Carbamidomethyl (C))L_ FPAHILDC(1)L FPAHILDC(94)L 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2764892578125 2 543.276052 1084.53755 1.0403 0.00056517 -0.24558 -0.00013342 0.79473 0.00043176 543.2757742190405 89.229 1.6774 83.053 82.206 83.883 -6.1757 279 93 4 0 0 0 0.0081063 6 58686 58568;58686;58808;58931;59054;59180 93.883 55.732 1 293350000 12736 8367 8791 8966 14648;14649;14650;14651;14652;14653 14649 809 -0.001335994288638176 FPAHPSLLL 9 Unmodified _FPAHPSLLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7904968261719 2 497.789653 993.564752 0.65134 0.00032423 0.30666 0.00015265 0.958 0.00047688 497.78982023589043 68.51 0.51141 68.535 68.282 68.793 0.025146 62 24 3 0 0 0 0.0094915 2 37560 37560;37659 81.864 17.14 1 31815000 12737 319 8792 8967 14654;14655 14654 0.06771252173848552 FPAHPSLLL 9 Unmodified _FPAHPSLLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7474670410156 2 497.789653 993.564752 0.66902 0.00033303 0.42219 0.00021016 1.0912 0.00054319 497.790150256609 82.701 0.81985 76.525 75.97 76.79 -6.1757 63 45 2 0 0 0 0.026326 1 53952 53952 63.563 25.412 1 9910100 12738 319 8792 8967 14656 14656 0.06771252173848552 FPAHPSLLL 9 Unmodified _FPAHPSLLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7293090820312 2 497.789653 993.564752 1.0404 0.00051788 -0.12625 -6.2847E-05 0.9141 0.00045503 497.78963830155817 83.318 1.1415 77.142 76.677 77.818 -6.1757 97 60 2 0 0 0 0.018845 1 54923 54923 50.855 0 1 12011000 12739 319 8792 8967 14657 14657 0.06771252173848552 FPAHSFITF 9 Unmodified _FPAHSFITF_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7717895507812 2 533.77146 1065.52837 -0.30709 -0.00016392 3.1523 0.0016826 2.8452 0.0015187 533.7722285691998 33.985 0.3554 33.794 33.617 33.972 -0.19131 29 13 3 0 0 0 0.10925 1 17736 17736 32.117 7.4431 1 2955500 12740 5464 8793 8968 14658 14658 -0.0017762472286904085 FPAHSFITF 9 Unmodified _FPAHSFITF_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7716674804688 2 533.77146 1065.52837 0.092142 4.9183E-05 -0.17687 -9.4408E-05 -0.084726 -4.5225E-05 533.7710370612947 72.483 0.44765 72.525 72.233 72.68 0.041725 42 20 3 0 0 0 0.087258 2 39814 39814;39917 36.044 16.605 1 2498500 12741 5464 8793 8968 14659;14660 14659 -0.0017762472286904085 FPAHTGSVEL 10 Unmodified _FPAHTGSVEL_ 0 0 0 REV__ENST00000583772.1_1_17:73016361-73017097:+|nuORF REV__ENST00000583772.1_1_17:73016361-73017097:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2735595703125 2 529.269281 1056.52401 0.3496 0.00018503 0.62033 0.00032832 0.96992 0.00051335 529.2715453079039 37.32 0.66598 37.32 37.18 37.846 0 53 34 3 0 0 0 0.38225 1 19935 19935 20.454 0 1 21290000 + 12742 29081 8794 8969 14661 14661 -0.0019913393641672883 FPAIEAATFL 10 Unmodified _FPAIEAATFL_ 0 0 0 REV__nc|ENSG00000124207|P55060-4|CSE1L REV__nc|ENSG00000124207|P55060-4|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2910766601562 2 540.292225 1078.5699 0.32772 0.00017707 -0.88258 -0.00047685 -0.55485 -0.00029978 540.2918411734591 36.332 0.38058 32.139 31.948 32.328 -4.1928 36 22 2 0 0 0 0.50944 1 21125 21125 15.847 4.2069 1 30879000 + 12743 19429 8795 8970 14662 14662 0.033755112457811265 FPAIQAAPSF 10 Unmodified _FPAIQAAPSF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7767333984375 2 524.776742 1047.53893 0.58351 0.00030621 -0.38676 -0.00020296 0.19674 0.00010325 524.7765688467136 73.273 0.52173 72.797 72.497 73.018 -0.47588 57 23 3 0 0 0 0.063761 2 40063 40063;40195 54.774 37.831 1 2833000 12744 5208 8796 8971 14663;14664 14663 0.017063579315390598 FPAIQAAPSF 10 Unmodified _FPAIQAAPSF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.777099609375 2 524.776742 1047.53893 0.041169 2.1604E-05 0.29856 0.00015668 0.33973 0.00017828 524.7767865827336 72.736 0.62335 72.778 72.465 73.089 0.041725 80 29 4 0 0 0 0.02987 2 40010 40010;40114 68.081 41.197 1 20176000 12745 5208 8796 8971 14665;14666 14665 0.017063579315390598 FPAIQAAPSF 10 Unmodified _FPAIQAAPSF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.777587890625 2 524.776742 1047.53893 0.73713 0.00038683 0.60619 0.00031811 1.3433 0.00070494 524.7769165810978 80.639 0.67694 74.464 74.168 74.845 -6.1757 107 36 4 0 0 0 0.0093317 3 52821 52821;52939;53061 88.904 52.777 1 101030000 12746 5208 8796 8971 14667;14668;14669 14667 0.017063579315390598 FPAIQHVINY 10 Unmodified _FPAIQHVINY_ 0 0 0 ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41;ENST00000505081.5_1_5:176938794-176940626:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.322021484375 2 601.321848 1200.62914 0.14515 8.7283E-05 0.29822 0.00017932 0.44337 0.00026661 601.3221300682216 61.597 0.33647 61.564 61.374 61.711 -0.032787 30 16 2 0 0 0 0.020813 1 33650 33650 74.929 56.783 1 4147000 12747 9129 8797 8972 14670 14670 0.03685407259990825 FPAKAVAEF 9 Unmodified _FPAKAVAEF_ 0 0 0 nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A nc|ENSG00000137203|P05549-5|TFAP2A nc|ENSG00000137203|P05549-5|TFAP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2665100097656 2 490.26601 978.517468 0.47498 0.00023287 -0.46537 -0.00022815 0.0096172 4.715E-06 490.2658479848882 48.689 0.55499 48.318 48.061 48.616 -0.37172 43 29 2 0 0 0 0.017075 2 26166 26053;26166 66.457 39.573 1 6128500 12748 4911 8798 8973 14671;14672 14672 0.027349729028514957 FPAKAVAEF 9 Unmodified _FPAKAVAEF_ 0 0 0 nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A nc|ENSG00000137203|P05549-5|TFAP2A nc|ENSG00000137203|P05549-5|TFAP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.266357421875 2 490.26601 978.517468 1.2029 0.00058975 -0.18694 -9.1648E-05 1.016 0.0004981 490.2657449311158 54.074 0.62531 48.209 47.947 48.572 -5.8653 66 37 2 0 0 0 0.0090524 3 34294 34135;34294;34436 85.642 49.514 1 23636000 12749 4911 8798 8973 14673;14674;14675 14674 0.027349729028514957 FPAKFVEVL 9 Unmodified _FPAKFVEVL_ 0 0 0 ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000478085.5_1_22:40803992-40804918:+|nuORF;ENST00000470518.5_1_22:40803281-40805023:+|nuORF ENSG00000100359|ENST00000248929|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3060302734375 2 525.305136 1048.59572 1.1301 0.00059367 -0.12407 -6.5174E-05 1.0061 0.0005285 525.3049332374904 71.176 0.3822 71.215 70.919 71.301 0.039024 39 16 3 0 0 0 0.047788 1 39112 39112 45.7 15.063 1 3280800 12750 1805 8799 8974 14676 14676 0.07336405488103992 FPAKQHIQTY 10 Unmodified _FPAKQHIQTY_ 0 0 0 ENSG00000148225|ENST00000374193|WDR31;nc|ENSG00000148225|Q8NA23-2|WDR31;ENST00000461942.5_1_9:116079031-116083765:-|nuORF ENSG00000148225|ENST00000374193|WDR31 ENSG00000148225|ENST00000374193|WDR31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.552734375 3 411.552262 1231.63496 0.86969 0.00035792 -0.10319 -4.2469E-05 0.7665 0.00031545 411.88653351122 28.49 0.37376 25.342 25.142 25.515 -3.1482 31 19 2 0 0 0 0.55245 1 15985 15985 13.615 7.8314 1 4915900 12751 5907 8800 8975 14677 14677 0.028405057716554438 FPAKTITY 8 Unmodified _FPAKTITY_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7605895996094 2 470.760561 939.506569 -0.004647 -2.1876E-06 0.33525 0.00015782 0.33061 0.00015564 470.7606581829152 39.515 0.51963 39.218 38.872 39.392 -0.29716 36 24 2 0 0 0 0.58039 2 20786 20786;20918 27.629 5.8822 1 3195000 12752 5657 8801 8976 14678;14679 14678 0.03439570528553304 FPAKTITY 8 Unmodified _FPAKTITY_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7618103027344 2 470.760561 939.506569 0.18521 8.7191E-05 1.4707 0.00069235 1.6559 0.00077954 470.76110797771986 39.891 0.35051 39.593 39.492 39.843 -0.29716 25 16 2 0 0 0 0.46677 1 21049 21049 37.974 14.826 1 1542100 12753 5657 8801 8976 14680 14680 0.03439570528553304 FPAKTITY 8 Unmodified _FPAKTITY_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7615966796875 2 470.760561 939.506569 0.52262 0.00024603 1.5529 0.00073103 2.0755 0.00097706 470.7613627802149 44.522 0.48064 39.67 39.279 39.759 -4.852 62 34 2 0 0 0 0.31379 1 27090 27090 53.833 28.433 1 34244000 12754 5657 8801 8976 14681 14681 0.03439570528553304 FPAKTITY 8 Unmodified _FPAKTITY_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.76220703125 2 470.760561 939.506569 0.47184 0.00022212 2.3743 0.0011177 2.8461 0.0013398 470.76196143942695 44.825 0.45602 39.973 39.793 40.249 -4.852 51 32 2 0 0 0 0.46677 1 27393 27393 37.974 13.3 1 15092000 12755 5657 8801 8976 14682 14682 0.03439570528553304 FPAKVTAHW 9 Unmodified _FPAKVTAHW_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5;TRAPPC5|p.S154N|1|0.14|ENSG00000181029|chr19:7682714-7682714|G/A|missense_variant ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8592529296875 3 352.859027 1055.55525 0.31836 0.00011234 0.11723 4.1365E-05 0.43559 0.0001537 352.8590101461318 40.449 0.72866 40.454 40.169 40.898 0.0050583 79 34 3 0 0 0 0.044296 3 21706 21490;21597;21706 47.594 29.221 1 14036000 12756 8944 8802 8977 14683;14684;14685 14685 0.029694838883187913 FPAKVTAHW 9 Unmodified _FPAKVTAHW_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5;TRAPPC5|p.S154N|1|0.14|ENSG00000181029|chr19:7682714-7682714|G/A|missense_variant ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7849731445312 2 528.784902 1055.55525 0.42288 0.00022362 -0.23515 -0.00012434 0.18774 9.9273E-05 528.7847443293672 40.431 0.48332 40.436 40.212 40.695 0.0050545 37 22 2 0 0 0 0.030212 2 21637 21526;21637 43.772 26.659 1 3783500 12757 8944 8802 8977 14686;14687 14687 0.029694838883187913 FPAKVTAHW 9 Unmodified _FPAKVTAHW_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5;TRAPPC5|p.S154N|1|0.14|ENSG00000181029|chr19:7682714-7682714|G/A|missense_variant ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8596801757812 3 352.859027 1055.55525 1.2048 0.00042513 0.37847 0.00013355 1.5833 0.00055868 352.85910662873016 45.028 0.81411 40.176 39.793 40.607 -4.852 151 57 4 0 0 0 0.076472 4 27650 27365;27505;27650;27819 38.615 31.513 1 109040000 12758 8944 8802 8977 14688;14689;14690;14691 14690 0.029694838883187913 FPAKVTAHW 9 Unmodified _FPAKVTAHW_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5;TRAPPC5|p.S154N|1|0.14|ENSG00000181029|chr19:7682714-7682714|G/A|missense_variant ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7860717773438 2 528.784902 1055.55525 0.52653 0.00027842 1.246 0.00065886 1.7725 0.00093728 528.785633901383 44.993 0.42205 40.141 39.935 40.357 -4.852 64 27 3 0 0 0 0.0061279 1 27568 27568 114.65 70.791 1 22423000 12759 8944 8802 8977 14692 14692 0.029694838883187913 FPALDILRL 9 Unmodified _FPALDILRL_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3264770507812 2 529.32386 1056.63317 2.0597 0.0010903 0.4522 0.00023936 2.5119 0.0013296 529.3241663305618 100.12 0.16545 100.09 100.02 100.18 -0.036301 14 5 4 0 0 0 0.07916 1 55623 55623 37.974 3.8716 1 34262000 12760 4894 8803 8978 14693 14693 0.10711496753697247 FPALFGDVKF 10 Unmodified _FPALFGDVKF_ 0 0 0 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8082275390625 2 570.808042 1139.60153 0.53238 0.00030388 -0.2725 -0.00015554 0.25988 0.00014834 570.8079617804599 90.349 0.27902 90.391 90.215 90.494 0.042175 21 9 3 0 0 0 0.10406 1 50267 50267 45.74 23.004 1 9338000 12761 9180 8804 8979 14694 14694 0.03731503999733832 FPALFGDVKF 10 Unmodified _FPALFGDVKF_ 0 0 0 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 ENSG00000183696|ENST00000395564|UPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.80712890625 2 570.808042 1139.60153 1.0404 0.00059389 -0.43276 -0.00024702 0.60768 0.00034687 570.807282118086 99.242 0.15356 93.066 92.99 93.144 -6.1757 19 8 3 0 0 0 0.06987 1 66043 66043 53.404 22.767 1 87201000 12762 9180 8804 8979 14695 14695 0.03731503999733832 FPALPGSSY 9 Unmodified _FPALPGSSY_ 0 0 0 nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;ENST00000551483.5_1_12:70731173-70731302:+|nuORF;ENST00000549947.1_1_12:70729240-70731562:+|nuORF nc|ENSG00000111596|Q9NZN8-5|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 938.4657592773438 1 938.46181 937.454533 0.33803 0.00031722 1.2595 0.001182 1.5975 0.0014992 938.4630788591663 63.117 0.29159 62.631 62.501 62.793 -0.48617 18 13 2 0 0 0 0.052168 1 34420 34420 44.407 6.2558 1 1956800 12763 2796 8805 8980 14696 14696 -0.016695928851959252 FPALPGSSY 9 Unmodified _FPALPGSSY_ 0 0 0 nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;ENST00000551483.5_1_12:70731173-70731302:+|nuORF;ENST00000549947.1_1_12:70729240-70731562:+|nuORF nc|ENSG00000111596|Q9NZN8-5|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7351684570312 2 469.734543 937.454533 0.41551 0.00019518 0.75921 0.00035663 1.1747 0.0005518 469.73474468506316 63.099 0.3769 62.612 62.44 62.816 -0.48617 25 17 2 0 0 0 0.28047 1 34474 34474 18.135 9.5417 1 1990200 12764 2796 8805 8980 14697 14697 -0.016695928851959252 FPALPGSSY 9 Unmodified _FPALPGSSY_ 0 0 0 nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;ENST00000551483.5_1_12:70731173-70731302:+|nuORF;ENST00000549947.1_1_12:70729240-70731562:+|nuORF nc|ENSG00000111596|Q9NZN8-5|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 MSMS AL20221201_MKP_PDAC_01 4 469.7343444824219 2 469.734543 937.454533 NaN NaN NaN NaN NaN NaN NaN 69.941 1 63.765 63.265 64.265 -6.1757 0 0 0 0.014367 1 45680 45680 86.121 25.732 1 12765 2796 8805 8980 14698 14698 -0.016695928851959252 FPALQGAQTKM 11 Oxidation (M) _FPALQGAQTKM(Oxidation (M))_ FPALQGAQTKM(1) FPALQGAQTKM(130) 0 0 1 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3116455078125 2 604.310623 1206.60669 -0.50676 -0.00030624 0.0078076 4.7182E-06 -0.49895 -0.00030152 604.3107925701878 36.397 0.4313 36.147 35.927 36.358 -0.2497 73 19 5 0 0 0 1.4363E-11 2 19038 19038;19139 128.58 103.59 1 119380000 12766 5208 8806 8981 14699;14700 14699 956 0.011654398000246147 FPALQGAQTKM 11 Oxidation (M) _FPALQGAQTKM(Oxidation (M))_ FPALQGAQTKM(1) FPALQGAQTKM(130) 0 0 1 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3103637695312 2 604.310623 1206.60669 -0.217 -0.00013113 -0.63405 -0.00038316 -0.85105 -0.0005143 604.3103794339546 36.062 0.41319 36.087 35.885 36.298 0.024971 70 18 5 0 0 0 1.4363E-11 2 19036 19036;19135 128.58 97.31 1 144480000 12767 5208 8806 8981 14701;14702 14701 956 0.011654398000246147 FPALQGAQTKM 11 Oxidation (M) _FPALQGAQTKM(Oxidation (M))_ FPALQGAQTKM(1) FPALQGAQTKM(150) 0 0 1 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.310302734375 2 604.310623 1206.60669 0.55271 0.00033401 -0.11322 -6.842E-05 0.43949 0.00026559 604.3107545100596 40.751 0.72115 36.222 35.904 36.625 -4.5294 152 44 5 0 0 0 1.0839E-20 3 24207 24207;24340;24468 146.48 109.98 1 262730000 12768 5208 8806 8981 14703;14704;14705 14703 956 0.011654398000246147 FPALQGAQTKM 11 Unmodified _FPALQGAQTKM_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.31298828125 2 596.313166 1190.61178 NaN NaN NaN NaN NaN NaN NaN 46.396 1 46.059 45.559 46.559 -0.33664 0 0 0 0.0036415 1 24832 24832 92.201 69.465 1 12769 5208 8806 8982 14706 14706 0.02409743662656183 FPALQGAQTKM 11 Unmodified _FPALQGAQTKM_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3145141601562 2 596.313166 1190.61178 0.46359 0.00027645 0.0070729 4.2176E-06 0.47067 0.00028066 596.3132529938456 46.126 0.3028 46.098 45.926 46.229 -0.028011 43 13 4 0 0 0 2.2641E-28 2 24764 24764;24868 190.03 150.08 1 21555000 12770 5208 8806 8982 14707;14708 14707 0.02409743662656183 FPALQGAQTKM 11 Unmodified _FPALQGAQTKM_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000557614.1_1_14:100803287-100808848:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8154296875 2 596.313166 1190.61178 -0.032789 -1.9553E-05 -0.41278 -0.00024614 -0.44557 -0.0002657 596.3131815498224 51.913 0.50234 46.178 45.951 46.453 -5.7345 111 33 5 0 0 0 1.1388000000000001E-62 3 32592 32592;32724;32890 260.19 216.33 1 628510000 12771 5208 8806 8982 14709;14710;14711 14709 0.02409743662656183 FPALSERCL 9 Unmodified _FPALSERCL_ 0 0 0 REV__ENST00000570267.2_1_16:89283700-89284024:-|nuORF REV__ENST00000570267.2_1_16:89283700-89284024:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2674560546875 2 518.268227 1034.5219 0.35869 0.0001859 -0.27748 -0.00014381 0.08121 4.2088E-05 518.268348059924 48.38 0.56765 48.009 47.671 48.238 -0.37172 87 28 4 0 0 0 0.36964 1 25831 25831 13.906 1.3745 1 53023000 + 12772 28968 8807 8983 14712 14712 0.006021140540951819 FPAMSSYIHL 10 Unmodified _FPAMSSYIHL_ 0 0 0 REV__ENST00000359890.7_2_14:23370637-23370934:-|nuORF REV__ENST00000359890.7_2_14:23370637-23370934:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2632446289062 2 583.289159 1164.56377 -0.36746 -0.00021434 2.216 0.0012925 1.8485 0.0010782 583.2905520957086 35.206 0.21216 35.206 35.034 35.246 0 12 10 2 0 0 0 0.22667 1 18588 18588 15.847 1.0089 1 1186300 + 12773 25901 8808 8984 14713 14713 -0.011933302573652327 FPANIGDEIY 10 Unmodified _FPANIGDEIY_ 0 0 0 ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF ENST00000503738.5_1_2:27851561-27855513:+|nuORF ENST00000503738.5_1_2:27851561-27855513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7747192382812 2 569.774396 1137.53424 0.27097 0.00015439 0.32336 0.00018424 0.59432 0.00033863 569.7745196677297 39.836 0.69897 39.539 39.243 39.942 -0.29716 72 33 3 0 0 0 0.35903 1 21074 21074 24.021 2.4836 1 3753200 12774 13657 8809 8985 14714 14714 -0.029025710018458994 FPANIQVVY 9 Unmodified _FPANIQVVY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7850952148438 2 525.784567 1049.55458 0.39922 0.0002099 0.35762 0.00018803 0.75684 0.00039794 525.7846829423115 71.293 1.1587 70.816 70.389 71.547 -0.47735 127 48 4 0 0 0 0.019979 5 39067 38859;38966;39067;39169;39293 63.563 31.257 1 4673400 12775 4858 8810 8986 14715;14716;14717;14718;14719 14717 0.03178644448621526 FPANIQVVY 9 Unmodified _FPANIQVVY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7848510742188 2 525.784567 1049.55458 0.68369 0.00035948 0.56826 0.00029878 1.252 0.00065826 525.7849613344862 78.881 0.87749 72.705 72.308 73.186 -6.1757 124 51 3 0 0 0 0.010877 5 51653 51385;51520;51653;51772;51894 77.984 40.01 1 70212000 12776 4858 8810 8986 14720;14721;14722;14723;14724 14722 0.03178644448621526 FPANNIVKF 9 Unmodified _FPANNIVKF_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2926025390625 2 525.292559 1048.57057 0.24349 0.0001279 0.13399 7.0385E-05 0.37748 0.00019829 525.2926322934475 59.716 0.66803 59.663 59.346 60.014 -0.053059 119 33 5 0 0 0 0.0041763 4 32427 32427;32536;32639;32747 120.45 88.145 1 100100000 12777 3816 8811 8987 14725;14726;14727;14728 14725 0.04822350685503807 FPANNIVKF 9 Unmodified _FPANNIVKF_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2927856445312 2 525.292559 1048.57057 0.40114 0.00021071 -0.48028 -0.00025229 -0.079147 -4.1575E-05 525.2921772472696 65.587 1.3326 59.411 58.982 60.315 -6.1757 208 76 3 0 0 0 0.00032477 4 42528 42528;42664;42802;42945 147.83 107.87 1 195330000 12778 3816 8811 8987 14729;14730;14731;14732 14729 0.04822350685503807 FPANVMDVI 9 Oxidation (M) _FPANVM(Oxidation (M))DVI_ FPANVM(1)DVI FPANVM(60)DVI 0 0 1 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2550659179688 2 511.254785 1020.49502 0.34873 0.00017829 0.29053 0.00014853 0.63926 0.00032682 511.2549213288208 68.287 0.45403 67.807 67.577 68.031 -0.48071 53 20 3 0 0 0 0.023164 1 37339 37339 60.39 43.447 1 2742600 12779 2594 8812 8988 14733 14733 445 -0.014409945570719174 FPANVMDVI 9 Oxidation (M) _FPANVM(Oxidation (M))DVI_ FPANVM(1)DVI FPANVM(46)DVI 0 0 1 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MSMS AL20221201_MKP_PDAC_01 4 511.2535400390625 2 511.254785 1020.49502 NaN NaN NaN NaN NaN NaN NaN 75.464 1 69.288 68.788 69.788 -6.1757 0 0 0 0.08978 1 49356 49356 46.021 23.285 1 12780 2594 8812 8988 14734 14734 445 -0.014409945570719174 FPANVMDVI 9 Oxidation (M) _FPANVM(Oxidation (M))DVI_ FPANVM(1)DVI FPANVM(55)DVI 0 0 1 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MSMS AL20221201_MKP_PDAC_01 4 511.2545166015625 2 511.254785 1020.49502 NaN NaN NaN NaN NaN NaN NaN 75.86 1 69.684 69.184 70.184 -6.1757 0 0 0 0.056448 1 49618 49618 54.774 30.564 1 12781 2594 8812 8988 14735 14735 445 -0.014409945570719174 FPANVMDVI 9 Unmodified _FPANVMDVI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2584838867188 2 503.257328 1004.5001 0.061678 3.104E-05 1.0495 0.00052815 1.1111 0.00055918 503.2579417540937 86.838 0.47061 86.334 86.115 86.586 -0.50318 43 18 3 0 0 0 0.052168 1 47529 47529 44.407 23.536 1 1291200 12782 2594 8812 8989 14736 14736 -0.001966906944630864 FPANVMDVI 9 Unmodified _FPANVMDVI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2572631835938 2 503.257328 1004.5001 1.3326 0.00067065 0.61507 0.00030954 1.9477 0.00098019 503.257753151164 96.617 0.9525 90.442 90.007 90.96 -6.1757 100 56 2 0 0 0 0.012148 4 64217 63843;63971;64093;64217 74.423 47.567 1 22867000 12783 2594 8812 8989 14737;14738;14739;14740 14740 -0.001966906944630864 FPANVMDVI 9 Unmodified _FPANVMDVI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MSMS AL20221201_MKP_PDAC_01 4 503.57421875 2 503.257328 1004.5001 NaN NaN NaN NaN NaN NaN NaN 97.236 1 91.061 90.561 91.561 -6.1757 0 0 0 0.41346 1 64444 64444 19.257 4.4187 1 12784 2594 8812 8989 14741 14741 -0.001966906944630864 FPAPAPPQF 9 Unmodified _FPAPAPPQF_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2532043457031 2 486.252903 970.491253 NaN NaN NaN NaN NaN NaN NaN 67.544 1 67.062 66.562 67.562 -0.48218 0 0 0 0.38239 1 36902 36902 20.871 6.2895 1 12785 1078 8813 8990 14742 14742 0.004827037313702931 FPAPDRKKL 9 Unmodified _FPAPDRKKL_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8812866210938 3 357.881831 1070.62366 0.62507 0.0002237 1.8269 0.00065382 2.452 0.00087752 357.88250733157025 25.328 0.29716 22.445 22.309 22.606 -2.8831 31 16 3 0 0 0 0.2289 1 13839 13839 20.581 8.3403 1 8308200 12786 5180 8814 8991 14743 14743 0.09117728468186215 FPAPDRKKLY 10 Unmodified _FPAPDRKKLY_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2362976074219 3 412.236274 1233.68699 -0.10545 -4.3471E-05 1.3312 0.00054878 1.2258 0.0005053 412.236312586612 29.097 0.26476 29.127 29.009 29.274 0.030104 23 10 4 0 0 0 0.65891 1 15156 15156 7.4771 3.0709 1 2299500 12787 5180 8815 8992 14744 14744 0.0794966918542741 FPAPGKPGNY 10 Unmodified _FPAPGKPGNY_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.266357421875 2 524.266542 1046.51853 -0.41173 -0.00021585 0.66682 0.00034959 0.25509 0.00013374 524.2668739588222 34.919 0.27768 34.728 34.584 34.861 -0.19131 20 11 2 0 0 0 0.11755 1 18273 18273 43.858 24.601 1 1691900 12788 559 8816 8993 14745 14745 -0.0028681272824542248 FPAPGKTVTL 10 Unmodified _FPAPGKTVTL_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111738432-111738684:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8023071289062 2 515.800217 1029.58588 0.23177 0.00011955 0.61033 0.00031481 0.84211 0.00043436 515.8004896557687 51.001 0.5183 50.588 50.394 50.912 -0.41351 84 25 5 0 0 0 0.16361 1 27656 27656 38.176 7.539 1 57172000 12789 6912 8817 8994 14746 14746 0.07227217482704873 FPAPGKTVTL 10 Unmodified _FPAPGKTVTL_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111738432-111738684:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8002319335938 2 515.800217 1029.58588 0.66021 0.00034054 0.49379 0.0002547 1.154 0.00059523 515.8005740245555 50.827 0.81882 50.773 50.388 51.207 -0.053871 89 40 3 0 0 0 0.014503 3 27555 27452;27555;27657 80.676 11.571 1 6763300 12790 6912 8817 8994 14747;14748;14749 14748 0.07227217482704873 FPAPGKTVTL 10 Unmodified _FPAPGKTVTL_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111738432-111738684:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8029174804688 2 515.800217 1029.58588 0.61713 0.00031832 1.7273 0.00089092 2.3444 0.0012092 515.8014697031564 56.867 0.58266 50.89 50.649 51.232 -5.9769 67 34 2 0 0 0 0.047829 1 36239 36239 59.368 15.596 1 54532000 12791 6912 8817 8994 14750 14750 0.07227217482704873 FPAPPQIPS 9 Unmodified _FPAPPQIPS_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;ENST00000593203.1_1_19:10934344-10943016:+|nuORF;ENST00000590806.5_1_19:10922561-10941720:+|nuORF nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2578125 2 477.258185 952.501818 0.22404 0.00010693 -1.2185 -0.00058152 -0.99441 -0.00047459 477.25785068326036 60.17 0.31829 59.68 59.527 59.845 -0.49079 21 15 2 0 0 0 0.078417 1 32734 32734 38.151 13.477 1 3028600 12792 1285 8818 8995 14751 14751 0.02366686385801131 FPAQELRKY 9 Unmodified _FPAQELRKY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5451965332031 3 384.545108 1150.61349 -0.093237 -3.5854E-05 0.53034 0.00020394 0.4371 0.00016809 384.5452166576616 32.259 0.40972 32.13 31.961 32.37 -0.12915 36 16 3 0 0 0 0.024189 2 16773 16773;16892 59.368 25.266 1 3937000 12793 9785 8819 8996 14752;14753 14752 0.044211207429498245 FPAQELRKY 9 Unmodified _FPAQELRKY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5465698242188 3 384.545108 1150.61349 1.598 0.00061449 0.84378 0.00032447 2.4418 0.00093896 384.54544820179143 36.059 0.48258 31.866 31.584 32.067 -4.1928 65 29 3 0 0 0 0.21589 2 21046 20912;21046 21.59 8.7175 1 27100000 12794 9785 8819 8996 14754;14755 14755 0.044211207429498245 FPAQNDDLL 9 Unmodified _FPAQNDDLL_ 0 0 0 REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7540283203125 2 516.753464 1031.49238 0.22528 0.00011641 1.4352 0.00074167 1.6605 0.00085808 516.7542783509714 64.703 0.87449 64.703 64.345 65.219 0 94 41 3 0 0 0 0.14602 1 36093 36093 28.487 3.0875 1 3766100 + 12795 18932 8820 8997 14756 14756 -0.022111266903721116 FPAQNDDLL 9 Unmodified _FPAQNDDLL_ 0 0 0 REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.753464 1031.49238 0.22528 0.00011641 1.4352 0.00074167 1.6605 0.00085808 516.7542783509714 64.703 0.87449 64.703 64.345 65.219 0 -0.12173 3.3376E-05 NaN 28.487 94 41 3 NaN NaN NaN NaN 0 NaN NaN 0 3766100 + 12796 18932 8820 8997 -0.022111266903721116 FPAQTASGF 9 Unmodified _FPAQTASGF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.224365234375 2 463.224342 924.434132 0.44728 0.00020719 1.2681 0.00058742 1.7154 0.00079461 463.22452931068193 47.829 0.79898 47.476 47.125 47.924 -0.3526 70 39 3 0 0 0 0.047196 3 25685 25567;25685;25797 46.021 24.11 1 3193300 12797 8546;15522 8821 8998 14757;14758;14759 14758 -0.03110763544987094 FPAQTASGF 9 Unmodified _FPAQTASGF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.224853515625 2 463.224342 924.434132 0.98581 0.00045665 0.03279 1.5189E-05 1.0186 0.00047184 463.22435277565756 54.968 0.67641 49.103 48.746 49.422 -5.8653 55 41 2 0 0 0 0.03568 1 35068 35068 52.268 12.311 1 18117000 12798 8546;15522 8821 8998 14760 14760 -0.03110763544987094 FPARAPLL 8 Unmodified _FPARAPLL_ 0 0 0 nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B nc|ENSG00000153214|Q96K49-2|TMEM87B nc|ENSG00000153214|Q96K49-2|TMEM87B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.771240234375 2 442.771263 883.527973 0.40088 0.0001775 0.31744 0.00014055 0.71832 0.00031805 442.77146332602655 55.289 0.45591 55.22 54.96 55.415 -0.068741 30 22 2 0 0 0 0.6895 1 29989 29989 18.135 8.7875 1 1468200 12799 6249 8822 8999 14761 14761 0.08155000347937857 FPARLRQY 8 Unmodified _FPARLRQY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2946166992188 2 525.795801 1049.57705 0.78286 0.00041163 3.7513 0.0019724 4.5342 0.002384 525.7976238070873 101.67 0.15129 95.493 95.373 95.524 -6.1757 10 7 2 0 0 0 0.77907 1 68145 68145 10.183 0.83596 1 11963000 12800 9907 8823 9000 14762 14762 0.05424288636891106 FPARLRQYASY 11 Unmodified _FPARLRQYASY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.9107971191406 3 457.910449 1370.70952 0.53814 0.00024642 0.39505 0.0001809 0.9332 0.00042732 457.9107125964526 39.629 0.22652 39.64 39.509 39.736 0.011452 25 10 3 0 0 0 0.2736 1 21107 21107 28.181 20.704 1 4791200 12801 9907 8824 9001 14763 14763 0.03899268583063531 FPARLRQYASY 11 Unmodified _FPARLRQYASY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20221201_MKP_PDAC_01 4 457.9109191894531 3 457.910449 1370.70952 NaN NaN NaN NaN NaN NaN NaN 44.787 1 39.935 39.435 40.435 -4.852 0 0 0 0.43177 1 27380 27380 27.129 8.7891 1 12802 9907 8824 9001 14764 14764 0.03899268583063531 FPARQSCPM 9 Carbamidomethyl (C),Oxidation (M) _FPARQSC(Carbamidomethyl (C))PM(Oxidation (M))_ FPARQSC(1)PM FPARQSCPM(1) FPARQSC(79)PM FPARQSCPM(79) 0 1 1 ENST00000494946.6_1_16:2822040-2825556:-|nuORF ENST00000494946.6_1_16:2822040-2825556:-|nuORF ENST00000494946.6_1_16:2822040-2825556:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.248291015625 2 555.246969 1108.47938 1.2235 0.00067932 -2.4105 -0.0013384 -1.1871 -0.00065913 555.2468202424891 20.479 0.4865 17.786 17.477 17.964 -2.693 81 30 5 0 0 0 0.010611 1 10885 10885 78.728 53.329 1 4565900 12803 14342 8825 9002 14765 14765 986 1773 -0.07051604345747364 FPARQSCPM 9 Carbamidomethyl (C),Oxidation (M) _FPARQSC(Carbamidomethyl (C))PM(Oxidation (M))_ FPARQSC(1)PM FPARQSCPM(1) FPARQSC(60)PM FPARQSCPM(60) 0 1 1 ENST00000494946.6_1_16:2822040-2825556:-|nuORF ENST00000494946.6_1_16:2822040-2825556:-|nuORF ENST00000494946.6_1_16:2822040-2825556:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2473754882812 2 555.246969 1108.47938 1.2376 0.00068716 -1.7654 -0.00098021 -0.52778 -0.00029305 555.2460720051189 20.822 0.55704 18.129 17.95 18.507 -2.693 70 33 3 0 0 0 0.023481 2 11063 11063;11173 60.074 41.939 1 4418800 12804 14342 8825 9002 14766;14767 14766 986 1773 -0.07051604345747364 FPARVPGTL 9 Unmodified _FPARVPGTL_ 0 0 0 ENSG00000186063|ENST00000340020|AIDA ENSG00000186063|ENST00000340020|AIDA ENSG00000186063|ENST00000340020|AIDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.27734375 2 479.279452 956.544351 1.321 0.00063311 -2.309 -0.0011067 -0.98807 -0.00047356 479.27818234527575 96.822 0.39218 90.647 90.453 90.845 -6.1757 38 22 2 0 0 0 0.46577 1 64253 64253 9.3474 0 1 14138000 12805 9446 8826 9003 14768 14768 0.0643408151404401 FPARVVYDLL 10 Unmodified _FPARVVYDLL_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8411865234375 2 596.839874 1191.66519 0.76784 0.00045828 2.2406 0.0013373 3.0085 0.0017956 596.841077024665 97.867 0.10867 91.691 91.64 91.749 -6.1757 9 6 2 0 0 0 0.16688 1 64890 64890 43.772 12.504 1 12740000 12806 1673 8827 9004 14769 14769 0.07702864436851087 FPASFPNRQY 10 Unmodified _FPASFPNRQY_ 0 0 0 nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF nc|ENSG00000101294|Q8TCT9-5|HM13 nc|ENSG00000101294|Q8TCT9-5|HM13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3042602539062 2 613.80128 1225.58801 0.38565 0.00023671 0.026768 1.643E-05 0.41242 0.00025314 613.8011252552978 46.071 0.55276 45.734 45.481 46.034 -0.33664 76 28 3 0 0 0 0.0081376 3 24530 24530;24633;24737 118.89 77.055 1 11114000 12807 1941 8828 9005 14770;14771;14772 14770 -0.015763537794782678 FPASFPNRQY 10 Unmodified _FPASFPNRQY_ 0 0 0 nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF nc|ENSG00000101294|Q8TCT9-5|HM13 nc|ENSG00000101294|Q8TCT9-5|HM13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.8001098632812 2 613.80128 1225.58801 0.48965 0.00030055 -0.06056 -3.7172E-05 0.42909 0.00026338 613.8012561878489 45.783 1.0728 45.755 45.343 46.415 -0.028011 204 52 5 0 0 0 2.4958E-05 6 24404 24404;24506;24611;24719;24815;24931 147.06 93.226 1 257320000 12808 1941 8828 9005 14773;14774;14775;14776;14777;14778 14773 -0.015763537794782678 FPASFPNRQY 10 Unmodified _FPASFPNRQY_ 0 0 0 nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000492709.5_1_20:30126008-30136787:+|nuORF nc|ENSG00000101294|Q8TCT9-5|HM13 nc|ENSG00000101294|Q8TCT9-5|HM13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8019409179688 2 613.80128 1225.58801 0.75736 0.00046487 -0.15618 -9.5866E-05 0.60117 0.000369 613.8012252667323 51.351 0.99696 45.702 45.184 46.181 -5.649 202 61 4 0 0 0 2.06E-09 5 32007 32007;32134;32260;32383;32508 168.66 109.98 1 1172600000 12809 1941 8828 9005 14779;14780;14781;14782;14783 14779 -0.015763537794782678 FPASKGIRAF 10 Unmodified _FPASKGIRAF_ 0 0 0 ENST00000547733.1_1_12:39688228-39705384:-|nuORF;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A ENST00000547733.1_1_12:39688228-39705384:-|nuORF ENST00000547733.1_1_12:39688228-39705384:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2110900878906 3 365.209948 1092.60801 1.3379 0.00048862 0.5537 0.00020222 1.8916 0.00069083 365.21038977408233 43.48 0.47123 38.716 38.595 39.066 -4.7648 39 29 2 0 0 0 0.56675 1 26420 26420 15.538 9.755 1 8282000 12810 5123 8829 9006 14784 14784 0.06541441951117122 FPASPPKGY 9 Unmodified _FPASPPKGY_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2510986328125 2 482.25036 962.486168 NaN NaN NaN NaN NaN NaN NaN 35.612 1 35.612 35.112 36.112 0 0 0 0 0.32177 1 18836 18836 24.021 7.0783 1 12811 2547 8830 9007 14785 14785 0.003423998687594576 FPASPPKGY 9 Unmodified _FPASPPKGY_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2501220703125 2 482.25036 962.486168 -0.31613 -0.00015245 -0.62533 -0.00030157 -0.94146 -0.00045402 482.24987918175464 35.657 0.70544 35.435 35.087 35.793 -0.2224 68 31 4 0 0 0 0.018301 2 18767 18667;18767 65.235 29.191 1 13348000 12812 2547 8830 9007 14786;14787 14787 0.003423998687594576 FPASPPKGY 9 Unmodified _FPASPPKGY_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2521362304688 2 482.25036 962.486168 0.031758 1.5315E-05 1.0702 0.00051609 1.1019 0.0005314 482.25100128267644 35.414 0.27382 35.439 35.328 35.602 0.024967 21 12 2 0 0 0 0.039985 1 18734 18734 49.933 26.785 1 1196700 12813 2547 8830 9007 14788 14788 0.003423998687594576 FPASPPKGY 9 Unmodified _FPASPPKGY_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MSMS AL20221201_MKP_PDAC_01 4 482.25146484375 2 482.25036 962.486168 NaN NaN NaN NaN NaN NaN NaN 40.198 1 35.669 35.169 36.169 -4.5294 0 0 0 0.10759 1 23978 23978 41.84 7.7372 1 12814 2547 8830 9007 14789 14789 0.003423998687594576 FPASPPKGY 9 Unmodified _FPASPPKGY_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MSMS AL20221201_MKP_PDAC_01 4 482.2507934570312 2 482.25036 962.486168 NaN NaN NaN NaN NaN NaN NaN 40.416 1 35.886 35.386 36.386 -4.5294 0 0 0 0.083082 1 24131 24131 47.749 19.262 1 12815 2547 8830 9007 14790 14790 0.003423998687594576 FPASPPKGYFL 11 Unmodified _FPASPPKGYFL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3271484375 2 612.326599 1222.63865 1.2602 0.00077168 -0.13718 -8.4E-05 1.1231 0.00068768 612.3262648940488 66.22 0.85342 66.23 65.891 66.744 0.0095596 121 42 4 0 0 0 0.017923 3 36525 36229;36419;36525 59.368 20.473 1 17983000 12816 2547 8831 9008 14791;14792;14793 14793 0.03623175545521917 FPASPPKGYFL 11 Unmodified _FPASPPKGYFL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3276977539062 2 612.326599 1222.63865 0.77626 0.00047533 -0.82757 -0.00050674 -0.051308 -3.1417E-05 612.3264232817178 75.347 1.2523 69.172 68.549 69.801 -6.1757 151 67 3 0 0 0 2.0147E-05 5 49059 49059;49188;49316;49439;49565 93.938 42.683 1 33663000 12817 2547 8831 9008 14794;14795;14796;14797;14798 14794 0.03623175545521917 FPASPPKGYFL 11 Unmodified _FPASPPKGYFL_ 0 0 0 ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S ENSG00000108106|ENST00000264552|UBE2S MSMS AL20221201_MKP_PDAC_01 4 612.3247680664062 2 612.326599 1222.63865 NaN NaN NaN NaN NaN NaN NaN 75.98 1 69.804 69.304 70.304 -6.1757 0 0 0 0.039465 1 49703 49703 65.474 11.641 1 12818 2547 8831 9008 14799 14799 0.03623175545521917 FPASSVQETSM 11 Unmodified _FPASSVQETSM_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 592.2684936523438 2 592.268621 1182.52269 NaN NaN NaN NaN NaN NaN NaN 49.899 1 44.36 43.86 44.86 -5.5391 0 0 0 0.33438 1 31229 31229 31.268 9.7314 1 12819 3760 8832 9009 14800 14800 -0.06127136087502549 FPASVHDSL 9 Unmodified _FPASVHDSL_ 0 0 0 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENST00000393299.6_1_6:71138108-71233862:+|nuORF nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7433471679688 2 486.742899 971.471246 -0.066777 -3.2503E-05 0.95687 0.00046575 0.8901 0.00043325 486.74330983382515 40.511 0.52199 40.511 40.236 40.758 0 43 27 2 0 0 0 0.012148 2 21829 21708;21829 74.423 36.272 1 3289000 12820 1343 8833 9010 14801;14802 14802 -0.01563091999230437 FPASVKDGY 9 Unmodified _FPASVKDGY_ 0 0 0 ENSG00000171723|ENST00000478722|GPHN;nc|ENSG00000171723|Q9NQX3|GPHN ENSG00000171723|ENST00000478722|GPHN ENSG00000171723|ENST00000478722|GPHN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2452392578125 2 492.245275 982.475997 -0.47186 -0.00023227 -0.17081 -8.4079E-05 -0.64266 -0.00031635 492.2453016595782 33.82 0.3754 33.82 33.633 34.009 0 29 18 2 0 0 0 0.10247 1 17775 17775 32.786 8.1118 1 2752600 12821 8131 8834 9011 14803 14803 -0.015942078564762596 FPASVKDGY 9 Unmodified _FPASVKDGY_ 0 0 0 ENSG00000171723|ENST00000478722|GPHN;nc|ENSG00000171723|Q9NQX3|GPHN ENSG00000171723|ENST00000478722|GPHN ENSG00000171723|ENST00000478722|GPHN MSMS AL20221201_MKP_PDAC_01 4 492.2451782226562 2 492.245275 982.475997 NaN NaN NaN NaN NaN NaN NaN 38.858 1 34.407 33.907 34.907 -4.4509 0 0 0 0.083082 1 22979 22979 47.749 13.561 1 12822 8131 8834 9011 14804 14804 -0.015942078564762596 FPATDAPEQF 10 Unmodified _FPATDAPEQF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7600708007812 2 561.758746 1121.50294 0.63905 0.00035899 0.71307 0.00040057 1.3521 0.00075957 561.7595213601786 53.365 0.89103 53.365 53.141 54.032 0 75 40 2 0 0 0 0.035736 2 29771 29771;29889 65.235 38.351 1 6786800 12823 5709 8835 9012 14805;14806 14805 -0.052951440359720436 FPATDAPEQF 10 Unmodified _FPATDAPEQF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.287109375 2 561.758746 1121.50294 1.0216 0.00057388 0.42732 0.00024005 1.4489 0.00081393 562.2606348593698 61.835 0.41103 55.659 55.464 55.875 -6.1757 40 21 3 0 0 0 0.22811 1 39725 39725 10.074 0 1 19139000 12824 5709 8835 9012 14807 14807 -0.052951440359720436 FPATEKQIF 9 Unmodified _FPATEKQIF_ 0 0 0 ENST00000509784.1_1_17:46933948-46940364:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2 ENST00000509784.1_1_17:46933948-46940364:+|nuORF ENST00000509784.1_1_17:46933948-46940364:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.790283203125 2 540.78985 1079.56515 0.67661 0.0003659 -0.98044 -0.00053021 -0.30384 -0.00016431 540.7891199924038 50.39 0.86836 49.998 49.568 50.436 -0.3923 76 42 3 0 0 0 0.036857 2 27015 27015;27128 51.63 24.746 1 3792500 12825 4820 8836 9013 14808;14809 14808 0.028546271030108983 FPATEKQIF 9 Unmodified _FPATEKQIF_ 0 0 0 ENST00000509784.1_1_17:46933948-46940364:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2 ENST00000509784.1_1_17:46933948-46940364:+|nuORF ENST00000509784.1_1_17:46933948-46940364:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.789794921875 2 540.78985 1079.56515 0.14509 7.8462E-05 1.3671 0.00073932 1.5122 0.00081778 540.7905386033232 55.977 0.49368 50.056 49.766 50.26 -5.9211 38 28 2 0 0 0 0.0082475 1 35754 35754 92.653 40.385 1 20723000 12826 4820 8836 9013 14810 14810 0.028546271030108983 FPATEKQIF 9 Unmodified _FPATEKQIF_ 0 0 0 ENST00000509784.1_1_17:46933948-46940364:+|nuORF;nc|ENSG00000136436|Q13137-5|CALCOCO2;nc|ENSG00000136436|Q13137-2|CALCOCO2;ENSG00000136436|ENST00000258947|CALCOCO2;nc|ENSG00000136436|Q13137-3|CALCOCO2;nc|ENSG00000136436|Q13137-4|CALCOCO2 ENST00000509784.1_1_17:46933948-46940364:+|nuORF ENST00000509784.1_1_17:46933948-46940364:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.7922973632812 2 540.78985 1079.56515 NaN NaN NaN NaN NaN NaN NaN 55.887 1 49.966 49.466 50.466 -5.9211 0 0 0 0.026638 1 35615 35615 70.332 25.925 1 12827 4820 8836 9013 14811 14811 0.028546271030108983 FPATGCQKL 9 Carbamidomethyl (C) _FPATGC(Carbamidomethyl (C))QKL_ FPATGC(1)QKL FPATGC(150)QKL 0 1 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.260498046875 2 511.260402 1020.50625 -0.42355 -0.00021655 1.1449 0.00058536 0.72137 0.00036881 511.2609754000829 33.155 0.9995 32.996 32.596 33.595 -0.15918 99 41 3 0 0 0 0.00022959 2 17253 17253;17350 149.99 87.422 1 3980300 12828 4904 8837 9014 14812;14813 14812 507 -0.0031817246292575874 FPATGCQKL 9 Carbamidomethyl (C) _FPATGC(Carbamidomethyl (C))QKL_ FPATGC(1)QKL FPATGC(120)QKL 0 1 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2610473632812 2 511.260402 1020.50625 1.0401 0.00053178 -0.19972 -0.00010211 0.84042 0.00042967 511.26024373451304 37.523 0.95193 33.24 32.75 33.702 -4.2835 179 57 4 0 0 0 0.0044708 4 21914 21914;22031;22155;22280 118.89 64.121 1 88021000 12829 4904 8837 9014 14814;14815;14816;14817 14814 507 -0.0031817246292575874 FPATPLLDY 9 Unmodified _FPATPLLDY_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7706909179688 2 518.771126 1035.5277 0.45165 0.00023431 -0.99767 -0.00051756 -0.54602 -0.00028326 518.7709495876078 83.04 0.65971 82.542 82.154 82.814 -0.49751 69 27 4 0 0 0 0.023164 2 45423 45423;45525 60.39 42.255 1 6596200 12830 4331 8838 9015 14818;14819 14818 0.01135535837443058 FPATPLLDY 9 Unmodified _FPATPLLDY_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.77197265625 2 518.771126 1035.5277 1.0609 0.00055036 0.3705 0.00019221 1.4314 0.00074257 518.7710989036967 91.071 1.5473 84.895 84.275 85.823 -6.1757 168 89 2 0 0 0 0.0086179 7 60163 59900;60030;60163;60292;60414;60542;60665 89.427 57.31 1 40693000 12831 4331 8838 9015 14820;14821;14822;14823;14824;14825;14826 14822 0.01135535837443058 FPATPLLDY 9 Unmodified _FPATPLLDY_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY;ENST00000588779.1_1_17:40024065-40026676:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.771126 1035.5277 0.33676 0.0001747 -0.13361 -6.9313E-05 0.20316 0.00010539 518.7712420558262 82.518 0.38338 82.518 82.314 82.697 0 -0.011878 0.00074136 NaN 60.39 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 368260 12832 4331 8838 9015 0.01135535837443058 FPATTNPVT 9 Unmodified _FPATTNPVT_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2444458007812 2 474.245275 946.475997 1.1015 0.00052238 -0.68404 -0.0003244 0.41746 0.00019798 474.24516966349245 61.571 0.66841 55.395 54.968 55.637 -6.1757 56 33 2 0 0 0 0.08691 1 39785 39785 36.127 3.8215 1 66857000 + 12833 24566 8839 9016 14827 14827 0.0006179214351504925 FPAVGMHSL 9 Unmodified _FPAVGMHSL_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2467956542969 2 479.744388 957.474223 1.2054 0.00057831 -0.43506 -0.00020872 0.77038 0.00036959 479.74403355303235 60.632 0.38158 54.484 54.324 54.706 -6.1478 33 19 2 0 0 0 0.0036753 2 39007 39007;39130 123.1 68.323 1 21646000 12834 7669 8840 9017 14828;14829 14828 -0.0062154014608495345 FPAVGMHSL 9 Unmodified _FPAVGMHSL_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.744388 957.474223 0.27014 0.0001296 -1.2447 -0.00059714 -0.97456 -0.00046754 479.7435904854337 54.896 0.14357 54.43 54.339 54.482 -0.46664 -0.027079 -0.00058785 NaN 123.1 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 666040 12835 7669 8840 9017 -0.0062154014608495345 FPAVHAAEM 9 Unmodified _FPAVHAAEM_ 0 0 0 ENSG00000113638|ENST00000337702|TTC33 ENSG00000113638|ENST00000337702|TTC33 ENSG00000113638|ENST00000337702|TTC33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.734130859375 2 486.73402 971.453487 0.63485 0.000309 -0.33028 -0.00016076 0.30457 0.00014825 486.7337529095336 48.184 0.27682 42.95 42.793 43.069 -5.2339 22 16 2 0 0 0 0.023164 1 29997 29997 60.39 38.643 1 8485300 12836 2984 8841 9018 14830 14830 -0.03338130525753513 FPAVTICTL 9 Carbamidomethyl (C) _FPAVTIC(Carbamidomethyl (C))TL_ FPAVTIC(1)TL FPAVTIC(82)TL 0 1 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2745056152344 2 511.272978 1020.5314 0.84198 0.00043048 -1.1097 -0.00056737 -0.26773 -0.00013688 511.2729817091694 87.25 0.58087 81.074 80.825 81.405 -6.1757 52 31 2 0 0 0 0.0094915 2 57480 57480;57672 81.864 28.288 1 10295000 12837 2778 8842 9019 14831;14832 14831 284 0.02195882339651689 FPAVTTAQY 9 Unmodified _FPAVTTAQY_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MSMS AL20221201_MKP_PDAC_01 4 499.2531127929688 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 58.966 1 52.892 52.392 53.392 -6.0745 0 0 0 0.050352 1 37815 37815 57.471 25.354 1 12838 10278 8843 9020 14833 14833 -0.006739213394439503 FPAWCIGF 8 Unmodified _FPAWCIGF_ 0 0 0 REV__ENSG00000171596|ENST00000305141|NMUR1 REV__ENSG00000171596|ENST00000305141|NMUR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7227172851562 2 470.722924 939.431295 -0.66442 -0.00031276 2.6808 0.0012619 2.0164 0.00094916 470.72420743173643 77.562 0.28848 77.08 76.956 77.244 -0.4826 24 13 2 0 0 0 0.5245 1 42439 42439 32.454 14.319 1 1532600 + 12839 22580 8844 9021 14834 14834 -0.04084310203506902 FPAWISQFL 9 Unmodified _FPAWISQFL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7950439453125 2 554.794935 1107.57532 0.2737 0.00015185 -0.93919 -0.00052106 -0.66549 -0.00036921 554.7946150254776 77.16 0.31569 77.21 77.057 77.372 0.05011 27 12 3 0 0 0 0.1773 1 42615 42615 25.399 2.2509 1 4285400 12840 1777 8845 9022 14835 14835 0.025832348282619932 FPAYERVVL 9 Unmodified _FPAYERVVL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3056030273438 2 547.305667 1092.59678 -0.42193 -0.00023092 0.60157 0.00032924 0.17964 9.8318E-05 547.3062592416338 61.172 0.40554 60.683 60.558 60.963 -0.48932 47 19 3 0 0 0 0.078314 1 33300 33300 38.176 15.439 1 7620400 12841 2175 8846 9023 14836 14836 0.05418619857005069 FPCAEVSGL 9 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))AEVSGL_ FPC(1)AEVSGL FPC(110)AEVSGL 0 1 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.4563598632812 1 979.455344 978.448068 0.5614 0.00054987 -0.6858 -0.00067171 -0.1244 -0.00012184 979.4548595804292 67.069 0.78302 60.894 60.489 61.272 -6.1757 113 43 3 0 0 0 0.0077963 3 43737 43596;43737;43866 109.63 52.531 1 33943000 12842 2068 8847 9024 14837;14838;14839 14838 204 -0.0420185410821432 FPCAEVSGL 9 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))AEVSGL_ FPC(1)AEVSGL FPC(71)AEVSGL 0 1 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2319946289062 2 490.23131 978.448068 0.64404 0.00031573 0.25286 0.00012396 0.8969 0.00043969 490.2314094702292 67.06 0.97091 60.885 60.368 61.339 -6.1757 124 54 3 0 0 0 0.013472 3 43755 43615;43755;43884 70.716 24.695 1 76828000 12843 2068 8847 9024 14840;14841;14842 14841 204 -0.0420185410821432 FPCFDEPAF 9 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))FDEPAF_ FPC(1)FDEPAF FPC(57)FDEPAF 0 1 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP;ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2376708984375 2 565.236593 1128.45863 1.2125 0.00068533 -0.037407 -2.1144E-05 1.1751 0.00066419 565.2368660394736 88.74 0.90683 82.564 82.096 83.003 -6.1757 121 50 3 0 0 0 0.027803 2 58346 58346;58473 56.541 26.316 1 26211000 12844 7176;2967 8848 9025 14843;14844 14843 304 -0.10045871453803557 FPCHKNCTPTL 11 Unmodified _FPCHKNCTPTL_ 0 0 0 nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-3|RGS7;ENSG00000182901|ENST00000440928|RGS7 nc|ENSG00000182901|P49802-4|RGS7 nc|ENSG00000182901|P49802-4|RGS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.798583984375 2 630.796826 1259.5791 NaN NaN NaN NaN NaN NaN NaN 66.304 1 65.821 65.321 66.321 -0.48323 0 0 0 0.93224 1 36202 36202 5.7319 0 1 12845 9099 8849 9026 14845 14845 -0.04030786731846092 FPCHRGPG 8 Unmodified _FPCHRGPG_ 0 0 0 REV__nc|ENSG00000130821|P48029-2|SLC6A8 REV__nc|ENSG00000130821|P48029-2|SLC6A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7055053710938 2 435.705597 869.396641 0.64579 0.00028137 -0.16054 -6.9947E-05 0.48525 0.00021143 435.70549521641254 64.253 0.3774 63.768 63.572 63.949 -0.48512 38 17 3 0 0 0 0.80722 1 35017 35017 2.3027 0 1 4451500 + 12846 29630 8850 9027 14846 14846 -0.04328133291596714 FPCLHCRHP 9 Unmodified _FPCLHCRHP_ 0 0 0 REV__ENSG00000095574|ENST00000368886|IKZF5 REV__ENSG00000095574|ENST00000368886|IKZF5 MSMS AL20221201_MKP_PDAC_01 4 555.2581176757812 2 555.260213 1108.50587 NaN NaN NaN NaN NaN NaN NaN 51.677 1 46.028 45.528 46.528 -5.649 0 0 0 0.43505 1 32539 32539 18.135 1.0221 1 + 12847 17945 8851 9028 14847 14847 -0.044038706637820724 FPCPAGHFNGF 11 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))PAGHFNGF_ FPC(1)PAGHFNGF FPC(150)PAGHFNGF 0 1 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.7763671875 2 625.774208 1249.53386 1.1595 0.00072556 -0.1232 -7.7093E-05 1.0363 0.00064847 625.7744529784558 64.404 0.70439 58.228 57.918 58.622 -6.1757 102 38 3 0 0 0 6.446299999999999E-21 3 41607 41607;41746;41900 149.99 113.87 1 38342000 12848 2597 8852 9029 14848;14849;14850 14848 266 -0.08092269202711577 FPCPAGHFNGF 11 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))PAGHFNGF_ FPC(1)PAGHFNGF FPC(82)PAGHFNGF 0 1 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.7753295898438 2 625.774208 1249.53386 0.64042 0.00040076 0.64148 0.00040142 1.2819 0.00080218 625.7747135895717 64.977 0.46584 58.802 58.606 59.072 -6.1757 65 25 3 0 0 0 0.0011251 2 42132 42132;42307 81.89 41.933 1 45402000 12849 2597 8852 9029 14851;14852 14851 266 -0.08092269202711577 FPCPYCPEK 9 2 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))PYC(Carbamidomethyl (C))PEK_ FPC(1)PYC(1)PEK FPC(96)PYC(96)PEK 0 2 0 nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 nc|ENSG00000124226|Q9Y508-2|RNF114 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2568969726562 2 599.257002 1196.49945 0.081138 4.8622E-05 -0.26637 -0.00015962 -0.18523 -0.000111 599.2567680579702 42.176 0.41151 37.491 37.252 37.663 -4.6846 55 25 3 0 0 0 0.0082548 2 25490 25338;25490 96.367 61.435 1 16102000 12850 3767 8853 9030 14853;14854 14854 381;382 -0.09093853405829577 FPCQYVKDTY 10 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))QYVKDTY_ FPC(1)QYVKDTY FPC(210)QYVKDTY 0 1 0 ENSG00000173281|ENST00000310455|PPP1R3B ENSG00000173281|ENST00000310455|PPP1R3B ENSG00000173281|ENST00000310455|PPP1R3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.80078125 2 660.800088 1319.58562 0.40614 0.00026838 0.38509 0.00025447 0.79123 0.00052285 660.8007559006116 48.074 0.6509 42.84 42.55 43.201 -5.2339 91 39 3 0 0 0 1.6244E-39 3 29885 29756;29885;30013 205.91 144.31 1 34189000 12851 8312 8854 9031 14855;14856;14857 14856 798 -0.06138570299458479 FPCSECDKRF 10 Unmodified _FPCSECDKRF_ 0 0 0 ENSG00000181444|ENST00000302017|ZNF467 ENSG00000181444|ENST00000302017|ZNF467 ENSG00000181444|ENST00000302017|ZNF467 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2681884765625 2 616.265358 1230.51616 0.74212 0.00045734 2.8082 0.0017306 3.5503 0.0021879 616.267629072161 68.315 0.19505 68.341 68.241 68.436 0.025146 19 9 3 0 0 0 0.6606 1 37538 37538 7.2892 1.0834 1 2523900 12852 8974 8855 9032 14858 14858 -0.08987352519898195 FPCSLEHTF 9 Carbamidomethyl (C) _FPC(Carbamidomethyl (C))SLEHTF_ FPC(1)SLEHTF FPC(130)SLEHTF 0 1 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2555541992188 2 569.255317 1136.49608 1.1376 0.00064756 1.0051 0.00057217 2.1427 0.0012197 569.2552015884353 59.31 0.69152 53.235 52.905 53.597 -6.0745 112 37 4 0 0 0 0.0018186 2 38124 37988;38124 133.7 58.773 1 90972000 12853 7581 8856 9033 14859;14860 14860 730 -0.06670780188187564 FPDAIRLRF 9 Unmodified _FPDAIRLRF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8858032226562 3 378.885464 1133.63456 0.56481 0.000214 -0.047126 -1.7856E-05 0.51769 0.00019614 378.8854022331839 65.006 0.60497 65.006 64.656 65.261 7.6294E-06 100 29 4 0 0 0 0.10734 3 35702 35483;35596;35702 23.79 11.615 1 105350000 12854 2139 8857 9034 14861;14862;14863 14863 0.07309130842440936 FPDAIRLRF 9 Unmodified _FPDAIRLRF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8247680664062 2 567.824558 1133.63456 0.73855 0.00041937 0.60567 0.00034391 1.3442 0.00076328 567.8247260536339 64.937 0.40036 64.937 64.76 65.16 7.6294E-06 50 19 3 0 0 0 0.039985 1 35582 35582 49.933 31.787 1 9411900 12855 2139 8857 9034 14864 14864 0.07309130842440936 FPDAIRLRF 9 Unmodified _FPDAIRLRF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8861083984375 3 378.885464 1133.63456 1.6557 0.00062733 -0.0062898 -2.3831E-06 1.6494 0.00062495 378.8853391199619 89.424 0.79993 83.249 82.815 83.615 -6.1757 134 44 4 0 0 0 0.10734 3 59079 58957;59079;59208 29.841 20.864 1 231880000 12856 2139 8857 9034 14865;14866;14867 14866 0.07309130842440936 FPDARDMVRY 10 Unmodified _FPDARDMVRY_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8737182617188 3 423.873007 1268.59719 NaN NaN NaN NaN NaN NaN NaN 48.111 1 47.758 47.258 48.258 -0.3526 0 0 0 0.75165 1 25810 25810 9.2438 5.6511 1 12857 1803 8858 9035 14868 14868 -0.026363284854596714 FPDARDMVRY 10 Unmodified _FPDARDMVRY_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8736877441406 3 423.873007 1268.59719 0.49133 0.00020826 0.30764 0.0001304 0.79897 0.00033866 423.8735842969903 47.811 0.20868 47.772 47.661 47.869 -0.038647 16 9 3 0 0 0 0.66229 1 25779 25779 4.1166 1.0444 1 1290800 12858 1803 8858 9035 14869 14869 -0.026363284854596714 FPDARDMVRY 10 Unmodified _FPDARDMVRY_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8739624023438 3 423.873007 1268.59719 1.4771 0.00062609 -0.25351 -0.00010746 1.2236 0.00051863 423.87307438379065 53.929 0.38588 48.064 47.897 48.283 -5.8653 64 22 4 0 0 0 0.087043 2 34092 34092;34226 36.395 27.951 1 36168000 12859 1803 8858 9035 14870;14871 14870 -0.026363284854596714 FPDARDMVRY 10 Unmodified _FPDARDMVRY_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8080444335938 2 635.305872 1268.59719 1.063 0.00067535 -1.501 -0.0009536 -0.43799 -0.00027826 635.3041552156415 53.931 0.21095 48.066 47.979 48.19 -5.8653 18 12 2 0 0 0 0.061704 1 34177 34177 55.235 38.122 1 6979000 12860 1803 8858 9035 14872 14872 -0.026363284854596714 FPDAVKQIL 9 Unmodified _FPDAVKQIL_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8010864257812 2 515.800217 1029.58588 0.64725 0.00033385 0.27072 0.00013964 0.91798 0.00047349 515.800312573353 62.285 0.46935 61.797 61.55 62.019 -0.48764 37 21 2 0 0 0 0.07087 1 33961 33961 39.95 15.929 1 2350200 12861 5445 8859 9036 14873 14873 0.07227217482704873 FPDDVPTSL 9 Unmodified _FPDDVPTSL_ 0 0 0 ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7437438964844 2 495.742565 989.470577 0.20608 0.00010216 0.58018 0.00028762 0.78626 0.00038978 495.74302524861054 63.651 0.47515 63.651 63.499 63.974 0 33 19 2 0 0 0 0.30562 1 35498 35498 16.942 7.5949 1 1001000 12862 3495 8860 9037 14874 14874 -0.024579314389370666 FPDECEHVQY 10 Carbamidomethyl (C) _FPDEC(Carbamidomethyl (C))EHVQY_ FPDEC(1)EHVQY FPDEC(150)EHVQY 0 1 0 ENSG00000175105|ENST00000636215|ZNF654;ENST00000473136.4_2_3:88108451-88184391:+|nuORF ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.268798828125 2 662.269152 1322.52375 0.21651 0.00014339 0.16291 0.00010789 0.37942 0.00025128 662.2693561033893 43.917 0.8717 39.152 38.772 39.644 -4.7648 111 58 3 0 0 0 1.8172E-08 3 26730 26591;26730;26866 151.48 127.46 1 12825000 12863 8485 8861 9038 14875;14876;14877 14876 816 -0.12460921718593454 FPDEFHLQTL 10 Unmodified _FPDEFHLQTL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.808349609375 2 623.808771 1245.60299 0.58684 0.00036607 0.56199 0.00035058 1.1488 0.00071665 623.8089972712775 72.891 0.42063 72.415 72.209 72.63 -0.47588 55 18 4 0 0 0 0.0052757 2 39847 39847;39942 97.741 67.9 1 4232900 12864 1001 8862 9039 14878;14879 14878 -0.009989067021479059 FPDEFHLQTL 10 Unmodified _FPDEFHLQTL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8099975585938 2 623.808771 1245.60299 0.60355 0.0003765 1.6774 0.0010464 2.281 0.0014229 623.8103961384392 84.015 0.73376 77.839 77.567 78.3 -6.1757 64 39 2 0 0 0 0.00089362 3 55490 55177;55304;55490 114.19 64.253 1 13755000 12865 1001 8862 9039 14880;14881;14882 14882 -0.009989067021479059 FPDEFHLQTL 10 Unmodified _FPDEFHLQTL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 623.808771 1245.60299 0.35035 0.00021855 1.3075 0.00081565 1.6579 0.0010342 623.8096774160498 72.485 0.35033 72.485 72.306 72.657 0 0.035179 0.00068065 NaN 97.741 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1019400 12866 1001 8862 9039 -0.009989067021479059 FPDEGILAVY 10 Unmodified _FPDEGILAVY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2876586914062 2 562.28714 1122.55973 0.33492 0.00018832 0.681 0.00038292 1.0159 0.00057124 562.287513339282 84.731 0.61008 84.731 84.422 85.032 0 74 29 3 0 0 0 0.54684 2 46940 46940;47037 13.906 6.6168 1 1596000 12867 2723 8863 9040 14883;14884 14883 0.0033490352059288853 FPDEGILAVY 10 Unmodified _FPDEGILAVY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.285888671875 2 562.28714 1122.55973 0.67829 0.00038139 -0.84242 -0.00047368 -0.16413 -9.2286E-05 562.2867807395187 85.176 0.62897 84.675 84.322 84.951 -0.5015 61 40 2 0 0 0 0.11755 1 46643 46643 43.858 33.034 1 2340900 12868 2723 8863 9040 14885 14885 0.0033490352059288853 FPDEGILAVY 10 Unmodified _FPDEGILAVY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.289306640625 2 562.28714 1122.55973 1.1972 0.00067316 1.0259 0.00057685 2.2231 0.00125 562.2870544851314 93.806 1.0847 87.631 87.247 88.332 -6.1757 114 64 2 0 0 0 0.27276 1 62237 62237 29.082 11.969 1 56092000 12869 2723 8863 9040 14886 14886 0.0033490352059288853 FPDEKIPTL 9 Unmodified _FPDEKIPTL_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2906494140625 2 530.289682 1058.56481 0.73404 0.00038925 2.5238 0.0013383 3.2578 0.0017276 530.2899991481064 60.115 1.1222 60.115 59.716 60.838 0 135 50 4 0 0 0 0.0089732 4 33578 33478;33578;33683;33833 86.332 42.474 1 5707000 12870 322 8864 9041 14887;14888;14889;14890 14888 0.037872073831977104 FPDEKIPTL 9 Unmodified _FPDEKIPTL_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2908935546875 2 530.289682 1058.56481 -0.25712 -0.00013635 1.3329 0.00070683 1.0758 0.00057048 530.2906278690502 60.867 0.80768 60.378 59.847 60.654 -0.48932 57 39 2 0 0 0 0.029718 3 32999 32999;33099;33201 55.503 17.529 1 8123800 12871 322 8864 9041 14891;14892;14893 14891 0.037872073831977104 FPDEKIPTL 9 Unmodified _FPDEKIPTL_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2902221679688 2 530.289682 1058.56481 0.59335 0.00031465 -1.5852 -0.00084063 -0.99188 -0.00052598 530.7899672955539 66.922 1.082 60.746 60.117 61.199 -6.1757 144 60 3 0 0 0 0.0085366 5 43640 43228;43357;43498;43640;43773 90.135 40.202 1 55656000 12872 322 8864 9041 14894;14895;14896;14897;14898 14897 0.037872073831977104 FPDELFFWC 9 Unmodified _FPDELFFWC_ 0 0 0 ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000462494.5_1_7:5568599-5569288:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2635498046875 2 602.26261 1202.51067 NaN NaN NaN NaN NaN NaN NaN 25.623 1 25.623 25.123 26.123 0 0 0 0 0.85737 1 13143 13143 0.6015 0 1 12873 13679 8865 9042 14899 14899 -0.08248708040036945 FPDEPMREY 9 Unmodified _FPDEPMREY_ 0 0 0 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2597045898438 2 592.258056 1182.50156 0.53859 0.00031898 1.586 0.00093931 2.1246 0.0012583 592.2593261210932 54 0.33525 54 53.797 54.132 0 35 15 3 0 0 0 0.41742 1 29912 29912 11.64 1.5664 1 5284500 12874 10487 8866 9043 14900 14900 -0.0823910139633881 FPDEPMREY 9 Unmodified _FPDEPMREY_ 0 0 0 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 592.258056 1182.50156 0.53859 0.00031898 1.586 0.00093931 2.1246 0.0012583 592.2593261210932 54 0.33525 54 53.797 54.132 0 -0.057288 -7.5326E-05 NaN 11.64 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5284500 12875 10487 8866 9043 -0.0823910139633881 FPDEPMREY 9 Unmodified _FPDEPMREY_ 0 0 0 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 ENSG00000214226|ENST00000397861|C17orf67 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 592.258056 1182.50156 0.043386 2.5696E-05 1.7846 0.001057 1.828 0.0010827 592.259104259857 54.581 0.23277 54.115 53.968 54.201 -0.46664 0.057288 0.00015997 NaN 11.64 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5220200 12876 10487 8866 9043 -0.0823910139633881 FPDEPYKDGY 10 Unmodified _FPDEPYKDGY_ 0 0 0 ENSG00000109775|ENST00000264689|UFSP2 ENSG00000109775|ENST00000264689|UFSP2 ENSG00000109775|ENST00000264689|UFSP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7694702148438 2 615.769311 1229.52407 0.30825 0.00018981 1.3622 0.00083877 1.6704 0.0010286 615.7698509521761 40.053 0.53958 40.053 39.892 40.432 0 49 26 3 0 0 0 0.047829 1 21498 21498 59.368 40.006 1 3397700 12877 2673 8867 9044 14901 14901 -0.08151178727075603 FPDETHERY 9 Unmodified _FPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5123596191406 3 398.512244 1192.5149 -0.4587 -0.0001828 0.23476 9.3555E-05 -0.22394 -8.9245E-05 398.5122585513554 24.848 0.87778 24.848 24.448 25.326 0 111 62 4 0 0 0 0.10134 4 12663 12567;12663;12757;12894 32.898 17.649 1 3330900 12878 10010 8868 9045 14902;14903;14904;14905 14903 -0.07365527292745355 FPDETHERY 9 Unmodified _FPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.21435546875 3 398.512244 1192.5149 0.56686 0.0002259 0.8218 0.0003275 1.3887 0.0005534 398.51267605619665 28.004 0.61577 24.856 24.526 25.142 -3.1482 72 32 3 0 0 0 0.20728 1 15414 15414 9.544 3.8121 1 16080000 12879 10010 8868 9045 14906 14906 -0.07365527292745355 FPDFKSAGVTL 11 Unmodified _FPDFKSAGVTL_ 0 0 0 ENST00000483741.1_1_1:44684093-44685454:+|nuORF;ENSG00000178028|ENST00000372289|DMAP1 ENST00000483741.1_1_1:44684093-44685454:+|nuORF ENST00000483741.1_1_1:44684093-44685454:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3507690429688 2 591.313689 1180.61282 0.43768 0.00025881 0.89888 0.00053152 1.3366 0.00079033 591.3138469271187 68.381 0.39391 68.406 68.188 68.582 0.025146 28 19 2 0 0 0 0.27103 1 37535 37535 23.79 7.9426 1 1498800 12880 8722 8869 9046 14907 14907 0.029742813032498816 FPDFPTPGVVF 11 Unmodified _FPDFPTPGVVF_ 0 0 0 nc|ENSG00000198931|P07741-2|APRT;ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF nc|ENSG00000198931|P07741-2|APRT nc|ENSG00000198931|P07741-2|APRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3134155273438 2 611.810782 1221.60701 2.9281 0.0017914 -0.046495 -2.8446E-05 2.8816 0.001763 611.8106219499643 99.838 0.35149 99.801 99.666 100.02 -0.036301 45 12 5 0 0 0 0.012451 1 55441 55441 65.235 39.836 1 11388000 12881 10201 8870 9047 14908 14908 0.005071827915571703 FPDFPTPGVVF 11 Unmodified _FPDFPTPGVVF_ 0 0 0 nc|ENSG00000198931|P07741-2|APRT;ENSG00000198931|ENST00000378364|APRT;ENST00000564858.1_1_16:88877682-88878307:-|nuORF nc|ENSG00000198931|P07741-2|APRT nc|ENSG00000198931|P07741-2|APRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8095703125 2 611.810782 1221.60701 1.3934 0.00085251 0.13206 8.0794E-05 1.5255 0.0009333 611.810669832256 101 0.22207 94.824 94.701 94.923 -6.1757 42 12 5 0 0 0 0.0011251 1 67650 67650 81.89 51.254 1 212310000 12882 10201 8870 9047 14909 14909 0.005071827915571703 FPDGAFII 8 Unmodified _FPDGAFII_ 0 0 0 ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 879.4645385742188 1 879.461081 878.453805 2.3835 0.0020962 1.4778 0.0012997 3.8614 0.0033959 879.4620894637028 95.357 0.41989 95.361 95.133 95.553 0.004158 30 15 3 0 0 0 0.67481 1 52911 52911 19.439 0.18201 1 4947800 12883 12485 8871 9048 14910 14910 0.00971612465752969 FPDGAFII 8 Unmodified _FPDGAFII_ 0 0 0 ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 879.462158203125 1 879.461081 878.453805 0.39333 0.00034592 0.41364 0.00036378 0.80697 0.0007097 879.4614420787583 100.6 0.17654 94.42 94.312 94.488 -6.1757 26 11 3 0 0 0 0.57408 1 67255 67255 28.173 8.7342 1 95518000 12884 12485 8871 9048 14911 14911 0.00971612465752969 FPDGAFII 8 Unmodified _FPDGAFII_ 0 0 0 ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF ENST00000375856.4_1_13:110408404-110408461:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2344665527344 2 440.234179 878.453805 0.69169 0.00030451 0.062577 2.7549E-05 0.75427 0.00033205 440.23418664094925 100.58 0.17362 94.407 94.33 94.503 -6.1757 20 11 2 0 0 0 0.65867 1 67288 67288 20.871 1.4322 1 73415000 12885 12485 8871 9048 14912 14912 0.00971612465752969 FPDHPHRGF 9 Unmodified _FPDHPHRGF_ 0 0 0 ENSG00000087842|ENST00000380420|PIR;ENST00000476381.5_1_X:15447791-15497935:-|nuORF;ENST00000471725.1_1_X:15496691-15511410:-|nuORF ENSG00000087842|ENST00000380420|PIR ENSG00000087842|ENST00000380420|PIR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7936401367188 2 555.267407 1108.52026 0.68778 0.0003819 0.24889 0.0001382 0.93666 0.0005201 555.2674284046072 67.426 0.36097 66.944 66.758 67.119 -0.48218 45 15 4 0 0 0 0.20528 1 36905 36905 8.5933 0 1 5096000 12886 1475 8872 9049 14913 14913 -0.029657589196403933 FPDHPHRGF 9 Unmodified _FPDHPHRGF_ 0 0 0 ENSG00000087842|ENST00000380420|PIR;ENST00000476381.5_1_X:15447791-15497935:-|nuORF;ENST00000471725.1_1_X:15496691-15511410:-|nuORF ENSG00000087842|ENST00000380420|PIR ENSG00000087842|ENST00000380420|PIR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7938842773438 2 555.267407 1108.52026 0.86177 0.00047851 -0.37034 -0.00020564 0.49142 0.00027287 555.267123338093 66.924 0.37 66.942 66.753 67.123 0.018036 50 17 4 0 0 0 0.21367 1 36771 36771 4.756 0 1 14693000 12887 1475 8872 9049 14914 14914 -0.029657589196403933 FPDHQLNNF 9 Unmodified _FPDHQLNNF_ 0 0 0 REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF REV__ENST00000371817.7_1_9:137734384-137734717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2651977539062 2 566.26453 1130.51451 -0.088886 -5.0333E-05 -2.0392 -0.0011547 -2.1281 -0.0012051 566.2630571872016 33.681 0.75959 33.522 33.27 34.03 -0.15918 65 30 3 0 0 0 0.49272 1 17615 17615 7.9102 2.6795 1 2981800 + 12888 26097 8873 9050 14915 14915 -0.045529022219625404 FPDIPIGY 8 Unmodified _FPDIPIGY_ 0 0 0 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 921.4721069335938 1 921.471646 920.46437 0.46351 0.00042711 0.4555 0.00041973 0.91901 0.00084684 921.4720223836982 82.071 0.73338 81.576 81.185 81.919 -0.4952 61 28 3 0 0 0 0.13235 4 44902 44807;44902;44995;45099 90.836 60.611 1 1435300 12889 1651 8874 9051 14916;14917;14918;14919 14917 0.0009559512019450267 FPDIPIGY 8 Unmodified _FPDIPIGY_ 0 0 0 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2398986816406 2 461.239461 920.46437 0.53075 0.0002448 0.88968 0.00041036 1.4204 0.00065516 461.23967310290885 82.066 0.78041 81.571 81.185 81.966 -0.4952 59 30 3 0 0 0 0.5953 3 44926 44815;44926;45021 26.341 9.2547 1 1494300 12890 1651 8874 9051 14920;14921;14922 14921 0.0009559512019450267 FPDIPIGY 8 Unmodified _FPDIPIGY_ 0 0 0 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2390747070312 2 461.239461 920.46437 1.18 0.00054426 -0.89913 -0.00041472 0.28085 0.00012954 461.2388955239512 89.42 0.78511 83.244 82.846 83.631 -6.1757 55 43 2 0 0 0 0.21786 3 59021 58891;59021;59146 67.035 38.862 1 12954000 12891 1651 8874 9051 14923;14924;14925 14924 0.0009559512019450267 FPDIPIGY 8 Unmodified _FPDIPIGY_ 0 0 0 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 921.4733276367188 1 921.471646 920.46437 1.0334 0.00095229 -0.18712 -0.00017243 0.84632 0.00077986 921.4713484636463 89.403 0.71566 83.227 82.969 83.685 -6.1757 68 39 2 0 0 0 0.061839 5 59041 58906;59029;59041;59166;59285 127.54 74.407 1 13789000 12892 1651 8874 9051 14926;14927;14928;14929;14930 14928 0.0009559512019450267 FPDISPPTY 9 Unmodified _FPDISPPTY_ 0 0 0 nc|ENSG00000137944|Q6YP21-3|KYAT3;ENSG00000137944|ENST00000260508|KYAT3;nc|ENSG00000137944|Q6YP21-2|KYAT3;ENST00000446900.6_1_1:89430347-89454033:-|nuORF nc|ENSG00000137944|Q6YP21-3|KYAT3 nc|ENSG00000137944|Q6YP21-3|KYAT3 MSMS AL20221201_MKP_PDAC_01 4 518.75244140625 2 518.752933 1035.49131 NaN NaN NaN NaN NaN NaN NaN 74.878 1 68.702 68.202 69.202 -6.1757 0 0 0 0.071041 1 48957 48957 50.855 10.898 1 12893 4990 8875 9052 14931 14931 -0.025013410592691798 FPDKGYSF 8 Unmodified _FPDKGYSF_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MSMS AL20221201_MKP_PDAC_01 4 480.7274780273438 2 480.726718 959.438883 NaN NaN NaN NaN NaN NaN NaN 51.42 1 45.771 45.271 46.271 -5.649 0 0 0 0.42933 1 32354 32354 49.933 19.296 1 12894 3183 8876 9053 14932 14932 -0.04245879402230912 FPDKLRRVL 9 Unmodified _FPDKLRRVL_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.9050903320312 3 381.904747 1142.69241 -0.021918 -8.3705E-06 0.68834 0.00026288 0.66643 0.00025451 381.90503989691103 37.945 0.37686 37.962 37.793 38.17 0.017036 43 17 3 0 0 0 0.44883 1 20171 20171 10.151 3.9587 1 5004100 12895 1652 8877 9054 14933 14933 0.12677392767886886 FPDKPITQY 9 Unmodified _FPDKPITQY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.78759765625 2 554.787307 1107.56006 1.1393 0.00063207 -0.29719 -0.00016488 0.84211 0.00046719 554.7869839822476 42.672 0.9249 42.672 42.218 43.143 0 185 46 5 0 0 0 0.0026383 4 23013 22906;23013;23118;23239 128.57 86.733 1 250370000 12896 10723 8878 9055 14934;14935;14936;14937 14935 0.010583232404314913 FPDKPITQY 9 Unmodified _FPDKPITQY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2886962890625 2 554.787307 1107.56006 0.36093 0.00020024 0.19899 0.0001104 0.55993 0.00031064 554.787367273448 42.979 0.79 42.669 42.235 43.025 -0.31039 131 36 5 0 0 0 0.0081 3 22684 22684;22788;22897 97.741 63.339 1 206140000 12897 10723 8878 9055 14938;14939;14940 14938 0.010583232404314913 FPDKPITQY 9 Unmodified _FPDKPITQY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.787353515625 2 554.787307 1107.56006 0.64924 0.00036019 1.0286 0.00057068 1.6779 0.00093087 554.7880088089107 42.656 0.68764 42.647 42.34 43.027 -0.0088196 75 31 3 0 0 0 0.00097698 3 22737 22737;22839;22943 139.78 89.849 1 22486000 12898 10723 8878 9055 14941;14942;14943 14941 0.010583232404314913 FPDKPITQY 9 Unmodified _FPDKPITQY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7877197265625 2 554.787307 1107.56006 0.99215 0.00055043 -0.10859 -6.0245E-05 0.88355 0.00049018 554.7872725394218 48.561 1.017 43.165 42.659 43.676 -5.3961 214 61 5 0 0 0 0.0088668 4 30272 30141;30272;30401;30528 87.258 58.177 1 1651199999.9999998 12899 10723 8878 9055 14944;14945;14946;14947 14945 0.010583232404314913 FPDKVAIQL 9 Unmodified _FPDKVAIQL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.8005981445312 2 515.800217 1029.58588 0.25936 0.00013378 -0.12401 -6.3964E-05 0.13535 6.9815E-05 515.8003379803073 63.798 0.62402 63.798 63.567 64.191 0 59 25 3 0 0 0 0.021948 1 35622 35622 61.602 12.048 1 3549400 12900 1900;993 8879 9056 14948 14948 0.07227217482704873 FPDKVAIQL 9 Unmodified _FPDKVAIQL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8007202148438 2 515.800217 1029.58588 0.58098 0.00029967 0.6108 0.00031505 1.1918 0.00061472 515.8004384610066 64.324 0.84315 63.838 63.473 64.316 -0.48512 138 39 5 0 0 0 0.024189 4 35046 34944;35046;35150;35247 59.368 11.774 1 61863000 12901 1900;993 8879 9056 14949;14950;14951;14952 14950 0.07227217482704873 FPDKVAIQL 9 Unmodified _FPDKVAIQL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8009033203125 2 515.800217 1029.58588 1.0471 0.00054008 0.57928 0.00029879 1.6264 0.00083888 515.8003600469381 63.776 0.68219 63.765 63.532 64.214 -0.010529 81 33 3 0 0 0 0.015688 2 34937 34937;35052 67.838 12.335 1 12675000 12902 1900;993 8879 9056 14953;14954 14953 0.07227217482704873 FPDKVAIQL 9 Unmodified _FPDKVAIQL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8007202148438 2 515.800217 1029.58588 1.0887 0.00056154 -0.16763 -8.6463E-05 0.92106 0.00047508 515.8002333633095 71.163 1.2232 64.987 64.333 65.556 -6.1757 192 62 4 0 0 0 0.011291 5 46426 46312;46426;46542;46661;46783 76.825 21.322 1 228790000 12903 1900;993 8879 9056 14955;14956;14957;14958;14959 14956 0.07227217482704873 FPDKVAIQL 9 Unmodified _FPDKVAIQL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MSMS AL20221201_MKP_PDAC_01 4 515.8023071289062 2 515.800217 1029.58588 NaN NaN NaN NaN NaN NaN NaN 70.096 1 63.92 63.42 64.42 -6.1757 0 0 0 0.054801 1 45789 45789 55.503 13.547 1 12904 1900;993 8879 9056 14960 14960 0.07227217482704873 FPDLFSEQL 9 Unmodified _FPDLFSEQL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2708740234375 2 548.27149 1094.52843 0.35434 0.00019427 -2.1029 -0.001153 -1.7486 -0.00095871 548.2704256943855 92.053 0.33835 91.573 91.43 91.768 -0.48093 40 17 3 0 0 0 0.23158 2 50323 50302;50323 20.454 6.4096 1 1479000 12905 10194 8880 9057 14961;14962 14962 -0.015056695135399423 FPDLPFTDEL 10 Unmodified _FPDLPFTDEL_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7;ENST00000473532.5_1_9:140005202-140008344:-|nuORF;ENST00000483783.1_1_9:140005102-140007040:-|nuORF ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5298156738281 3 398.529012 1192.56521 0.25097 0.00010002 -1.3688 -0.00054552 -1.1179 -0.0004455 398.528447340969 23.215 0.54074 20.437 20.031 20.572 -2.7784 81 43 2 0 0 0 0.56675 1 12403 12403 12.873 1.9736 1 28812000 12906 8641 8881 9058 14963 14963 -0.023374176875904595 FPDLRLIQY 9 Unmodified _FPDLRLIQY_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8243408203125 2 582.824224 1163.63389 0.85496 0.00049829 -0.59662 -0.00034772 0.25834 0.00015057 582.8238297767475 78.761 0.9137 78.815 78.396 79.31 0.054306 106 36 4 0 0 0 0.010362 4 43354 43354;43461;43568;43678 96.367 3.8776 1 20106000 12907 1301 8882 9059 14964;14965;14966;14967 14964 0.05862291402763731 FPDLRLIQY 9 Unmodified _FPDLRLIQY_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8251953125 2 582.824224 1163.63389 1.1798 0.0006876 -0.34391 -0.00020044 0.83586 0.00048716 582.8238989464573 94.243 0.95735 88.067 87.469 88.426 -6.1757 144 55 4 0 0 0 0.0060143 3 62427 62299;62427;62553 103.42 3.8776 1 50147000 12908 1301 8882 9059 14968;14969;14970 14969 0.05862291402763731 FPDLRLIQY 9 Unmodified _FPDLRLIQY_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8233642578125 2 582.824224 1163.63389 0.9812 0.00057187 0.51471 0.00029998 1.4959 0.00087185 582.8243580755985 94.876 0.57792 88.701 88.426 89.004 -6.1757 83 32 3 0 0 0 0.0083595 1 62668 62668 96.367 3.7132 1 21883000 12909 1301 8882 9059 14971 14971 0.05862291402763731 FPDNQRPAL 9 Unmodified _FPDNQRPAL_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-3|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.27587890625 2 529.274898 1056.53524 0.54636 0.00028918 0.93638 0.0004956 1.4827 0.00078478 529.2752336557364 37.017 0.48719 37.017 36.732 37.219 0 45 23 3 0 0 0 0.16226 1 19611 19611 26.884 3.7352 1 2092900 12910 8545 8883 9060 14972 14972 0.009236881576953238 FPDNQRPAL 9 Unmodified _FPDNQRPAL_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-3|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2753295898438 2 529.274898 1056.53524 -0.17366 -9.1913E-05 1.4809 0.00078381 1.3073 0.0006919 529.2757697925692 37.581 0.58041 37.309 36.945 37.525 -0.27133 44 24 2 0 0 0 0.10734 1 19721 19721 32.305 5.9642 1 1558800 12911 8545 8883 9060 14973 14973 0.009236881576953238 FPDNQRPAL 9 Unmodified _FPDNQRPAL_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-3|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2745971679688 2 529.274898 1056.53524 0.99283 0.00052548 0.38854 0.00020565 1.3814 0.00073112 529.2744188049569 42.622 0.92422 37.937 37.317 38.241 -4.6846 86 60 3 0 0 0 0.011968 3 25789 25513;25789;25931 74.929 42.143 1 21334000 12912 8545 8883 9060 14974;14975;14976 14975 0.009236881576953238 FPDNSLEQL 9 Unmodified _FPDNSLEQL_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7579345703125 2 531.758746 1061.50294 0.46871 0.00024924 -1.0044 -0.00053408 -0.53565 -0.00028483 531.758196358715 61.249 0.63398 61.249 60.863 61.497 0 43 27 2 0 0 0 0.30562 1 34180 34180 16.942 3.0362 1 640770 12913 10932 8884 9061 14977 14977 -0.02535144035960002 FPDPAGKLNQF 11 Unmodified _FPDPAGKLNQF_ 0 0 0 nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF nc|ENSG00000033011|Q9BT22-2|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3162231445312 2 617.316763 1232.61897 0.52418 0.00032358 -0.91907 -0.00056736 -0.3949 -0.00024378 617.3161211017542 57.665 0.53016 57.175 56.88 57.41 -0.48974 63 25 3 0 0 0 4.539E-06 3 31236 31236;31334;31435 96.367 72.346 1 22377000 12914 595 8885 9062 14978;14979;14980 14978 0.011967995347276883 FPDPAGKLNQF 11 Unmodified _FPDPAGKLNQF_ 0 0 0 nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF nc|ENSG00000033011|Q9BT22-2|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3172607421875 2 617.316763 1232.61897 0.98822 0.00061005 -0.30628 -0.00018907 0.68194 0.00042097 617.3166711659082 57.242 0.50044 57.176 56.917 57.418 -0.066036 62 24 3 0 0 0 6.2664E-11 2 31176 31075;31176 121.35 86.944 1 14737000 12915 595 8885 9062 14981;14982 14982 0.011967995347276883 FPDPAGKLNQF 11 Unmodified _FPDPAGKLNQF_ 0 0 0 nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1;ENST00000482043.1_1_7:6968215-6970400:+|nuORF;ENST00000450217.2_1_11:3427793-3430002:+|nuORF nc|ENSG00000033011|Q9BT22-2|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8190307617188 2 617.316763 1232.61897 1.1869 0.00073267 0.39781 0.00024558 1.5847 0.00097825 617.3170244048779 63.94 1.2305 57.764 57.391 58.622 -6.1757 187 67 3 0 0 0 8.397900000000001E-63 6 41602 41210;41335;41465;41602;41745;41902 208.35 149.68 1 80103000 12916 595 8885 9062 14983;14984;14985;14986;14987;14988 14986 0.011967995347276883 FPDPEKPCKM 10 Carbamidomethyl (C),Oxidation (M) _FPDPEKPC(Carbamidomethyl (C))KM(Oxidation (M))_ FPDPEKPC(1)KM FPDPEKPCKM(1) FPDPEKPC(71)KM FPDPEKPCKM(71) 0 1 1 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.7890625 2 632.788666 1263.56278 0.3522 0.00022287 -0.0859 -5.4357E-05 0.2663 0.00016851 632.7887888766592 26.636 0.55392 23.685 23.405 23.959 -2.9511 71 28 3 0 0 0 0.025206 3 14702 14584;14702;14821 70.929 46.908 1 16405000 12917 10081 8886 9063 14989;14990;14991 14990 912 1636 -0.05845912688573662 FPDPEKPCKM 10 Carbamidomethyl (C) _FPDPEKPC(Carbamidomethyl (C))KM_ FPDPEKPC(1)KM FPDPEKPC(70)KM 0 1 0 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8641662597656 3 416.863232 1247.56787 1.1648 0.00048555 -0.82357 -0.00034332 0.34119 0.00014223 416.8630980016487 35.107 0.66711 31.012 30.632 31.299 -4.0951 160 39 6 0 0 0 0.025682 1 20131 20131 70.496 58.321 1 325310000 12918 10081 8886 9064 14992 14992 912 -0.04601608825987569 FPDPEKPCKM 10 Carbamidomethyl (C) _FPDPEKPC(Carbamidomethyl (C))KM_ FPDPEKPC(1)KM FPDPEKPC(88)KM 0 1 0 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.7913208007812 2 624.791209 1247.56787 0.6807 0.0004253 -0.76764 -0.00047962 -0.08694 -5.432E-05 624.7909115724314 35.094 0.52194 30.999 30.718 31.24 -4.0951 82 30 3 0 0 0 0.0096273 3 20188 20188;20313;20447 88.364 64.343 1 55756000 12919 10081 8886 9064 14993;14994;14995 14993 912 -0.04601608825987569 FPDPKVKKY 9 Unmodified _FPDPKVKKY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5501708984375 3 374.54997 1120.62808 -0.32349 -0.00012116 1.2723 0.00047652 0.94877 0.00035536 374.5504072915925 23.24 0.58876 23.24 22.921 23.51 0 93 28 4 0 0 0 0.10734 3 11744 11744;11838;11939 29.841 22.232 1 10963000 12920 3235 8887 9065 14996;14997;14998 14996 0.07259192891092425 FPDPKVKKY 9 Unmodified _FPDPKVKKY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8834228515625 3 374.54997 1120.62808 -0.016429 -6.1533E-06 -0.61812 -0.00023152 -0.63455 -0.00023767 374.5496627871537 23.328 0.53325 23.34 23.095 23.628 0.012394 62 25 3 0 0 0 0.044011 3 11815 11815;11917;12013 37.075 27.531 1 16943000 12921 3235 8887 9065 14999;15000;15001 14999 0.07259192891092425 FPDPKVKKY 9 Unmodified _FPDPKVKKY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8833923339844 3 374.54997 1120.62808 0.14164 5.305E-05 -0.31321 -0.00011731 -0.17157 -6.4263E-05 374.5497755698752 23.234 0.41982 23.251 22.973 23.393 0.01749 47 20 3 0 0 0 0.028475 2 11863 11863;11965 43.982 33.831 1 18725000 12922 3235 8887 9065 15002;15003 15002 0.07259192891092425 FPDPKVKKY 9 Unmodified _FPDPKVKKY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5499572753906 3 374.54997 1120.62808 0.64517 0.00024165 -0.18304 -6.8557E-05 0.46213 0.00017309 374.54984591572344 26.056 0.72719 23.105 22.754 23.481 -2.9511 158 44 5 0 0 0 0.03568 4 14374 14138;14256;14374;14491 40.239 30.089 1 524950000 12923 3235 8887 9065 15004;15005;15006;15007 15006 0.07259192891092425 FPDPKVKKY 9 Unmodified _FPDPKVKKY_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3221435546875 2 561.321317 1120.62808 0.31316 0.00017578 -0.33655 -0.00018891 -0.023384 -1.3126E-05 561.3210768094888 26.049 0.49053 23.098 22.868 23.358 -2.9511 67 30 3 0 0 0 0.0081887 2 14400 14280;14400 93.166 59.448 1 31637000 12924 3235 8887 9065 15008;15009 15009 0.07259192891092425 FPDPKVKKYF 10 Unmodified _FPDPKVKKYF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6;ENST00000474239.1_1_1:11724615-11732081:+|nuORF ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5735778808594 3 423.572775 1267.69649 0.39755 0.00016839 0.72734 0.00030808 1.1249 0.00047647 423.572975938712 40.203 0.27184 40.208 40.088 40.36 0.0050545 28 12 3 0 0 0 0.24511 1 21411 21411 30.703 27.708 1 2118100 12925 3235 8888 9066 15010 15010 0.07335437470942452 FPDPNVKYVF 10 Unmodified _FPDPNVKYVF_ 0 0 0 ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1 ENST00000529476.1_1_1:161011414-161013065:-|nuORF ENST00000529476.1_1_1:161011414-161013065:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.3163452148438 2 613.316232 1224.61791 0.67822 0.00041596 -0.87348 -0.00053572 -0.19527 -0.00011976 613.3155431313721 68.082 0.93089 67.6 67.208 68.139 -0.48218 108 42 3 0 0 0 0.04848 4 37271 37065;37168;37271;37394 59.052 29.971 1 5645100 12926 6607 8889 9067 15011;15012;15013;15014 15013 0.014585851658239335 FPDPNVKYVF 10 Unmodified _FPDPNVKYVF_ 0 0 0 ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1 ENST00000529476.1_1_1:161011414-161013065:-|nuORF ENST00000529476.1_1_1:161011414-161013065:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3170776367188 2 613.316232 1224.61791 0.56904 0.000349 -0.43252 -0.00026527 0.13652 8.3729E-05 613.3159777323829 67.649 0.90269 67.667 67.178 68.081 0.018036 121 44 3 0 0 0 0.022716 4 36998 36998;37108;37210;37317 73.196 46.928 1 16980000 12927 6607 8889 9067 15015;15016;15017;15018 15015 0.014585851658239335 FPDPNVKYVF 10 Unmodified _FPDPNVKYVF_ 0 0 0 ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1 ENST00000529476.1_1_1:161011414-161013065:-|nuORF ENST00000529476.1_1_1:161011414-161013065:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3158569335938 2 613.316232 1224.61791 0.41221 0.00025281 -0.31554 -0.00019353 0.096668 5.9288E-05 613.8176476924356 76.455 1.3643 70.279 69.717 71.081 -6.1757 190 75 3 0 0 0 0.024351 4 49825 49825;49942;50069;50192 71.708 42.626 1 51490000 12928 6607 8889 9067 15019;15020;15021;15022 15019 0.014585851658239335 FPDPRGLYHF 10 Unmodified _FPDPRGLYHF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.876953125 3 416.876857 1247.60874 0.20043 8.3555E-05 0.17993 7.5008E-05 0.38036 0.00015856 416.8769156568486 62.69 0.55444 62.668 62.393 62.948 -0.021614 88 28 4 0 0 0 0.2178 2 34192 34192;34303 21.59 13.645 1 26035000 12929 10361 8890 9068 15023;15024 15023 -0.005157633998123856 FPDPRGLYHF 10 Unmodified _FPDPRGLYHF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.877197265625 3 416.876857 1247.60874 1.0007 0.00041717 0.43747 0.00018237 1.4382 0.00059954 416.8770447190663 77.722 0.94169 71.546 70.973 71.915 -6.1757 113 54 3 0 0 0 0.33553 5 50897 50503;50638;50768;50897;51030 16.566 9.4254 1 24717000 12930 10361 8890 9068 15025;15026;15027;15028;15029 15028 -0.005157633998123856 FPDPRGLYHF 10 Unmodified _FPDPRGLYHF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.87744140625 3 416.876857 1247.60874 NaN NaN NaN NaN NaN NaN NaN 78.354 1 72.178 71.678 72.678 -6.1757 0 0 0 0.76313 1 51283 51283 8.4443 2.5762 1 12931 10361 8890 9068 15030 15030 -0.005157633998123856 FPDPRGLYHF 10 Unmodified _FPDPRGLYHF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 416.876857 1247.60874 0.38908 0.0001622 1.3162 0.0005487 1.7053 0.0007109 417.2117827565776 63.164 0.23391 62.678 62.583 62.816 -0.48617 0.0048972 0.0011933 NaN 21.59 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 754090 12932 10361 8890 9068 -0.005157633998123856 FPDQLAYPL 9 Unmodified _FPDQLAYPL_ 0 0 0 REV__ENSG00000254585|ENST00000650528|MAGEL2 REV__ENSG00000254585|ENST00000650528|MAGEL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.277587890625 2 532.276575 1062.5386 NaN NaN NaN NaN NaN NaN NaN 60.105 1 59.614 59.114 60.114 -0.49079 0 0 0 0.57317 1 32719 32719 13.508 0 1 + 12933 24524 8891 9069 15031 15031 0.009829382117231944 FPDQNFEVM 9 Oxidation (M) _FPDQNFEVM(Oxidation (M))_ FPDQNFEVM(1) FPDQNFEVM(65) 0 0 1 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.745361328125 2 571.744782 1141.47501 0.18056 0.00010324 3.333 0.0019056 3.5136 0.0020089 571.7464336358761 52.178 1.3169 52.178 51.15 52.467 0 160 59 4 0 0 0 0.018301 2 28506 28393;28506 65.235 25.285 1 25808000 12934 1180 8892 9070 15032;15033 15033 196 -0.090067902877081 FPDQNFEVM 9 Unmodified _FPDQNFEVM_ 0 0 0 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7472534179688 2 563.747324 1125.4801 1.1331 0.0006388 -0.78768 -0.00044405 0.34546 0.00019475 563.7466764413558 74.951 0.85053 68.775 68.344 69.194 -6.1757 80 45 2 0 0 0 0.06294 3 48823 48823;48983;49113 41.84 15.571 1 11501000 12935 1180 8892 9071 15034;15035;15036 15034 -0.07762486425076531 FPDQVQDLVF 10 Unmodified _FPDQVQDLVF_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3042602539062 2 604.303321 1206.59209 0.45421 0.00027448 0.1446 8.7384E-05 0.59881 0.00036186 604.303675819239 87.678 0.20162 87.174 87.06 87.262 -0.50423 15 9 2 0 0 0 0.69917 1 47986 47986 2.9952 1.3426 1 358450 12936 3233 8893 9072 15037 15037 -0.002943090764574663 FPDRATLY 8 Unmodified _FPDRATLY_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7542419433594 2 491.753267 981.491981 1.0175 0.00050034 0.14533 7.1468E-05 1.1628 0.0005718 491.7531744719949 50.144 0.88452 44.605 44.201 45.085 -5.5391 102 56 2 0 0 0 0.20424 4 31186 31186;31323;31462;31603 69.105 36.799 1 33469000 12937 3948 8894 9073 15038;15039;15040;15041 15038 0.0004949838041738985 FPDSPGGTSY 10 Unmodified _FPDSPGGTSY_ 0 0 0 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2219848632812 2 514.221997 1026.42944 0.13858 7.1261E-05 -0.4161 -0.00021397 -0.27751 -0.0001427 514.22191447045 40.019 0.84828 40.019 39.661 40.51 0 101 42 3 0 0 0 0.0057604 3 21479 21372;21479;21705 96.285 64.168 1 9584500 12938 5877 8895 9074 15042;15043;15044 15043 -0.08271692478410841 FPDSPGGTSY 10 Unmodified _FPDSPGGTSY_ 0 0 0 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 MSMS AL20221201_MKP_PDAC_01 4 514.221435546875 2 514.221997 1026.42944 NaN NaN NaN NaN NaN NaN NaN 46.968 1 41.887 41.387 42.387 -5.0805 0 0 0 0.3465 1 29097 29097 34.402 13.948 1 12939 5877 8895 9074 15045 15045 -0.08271692478410841 FPDTGSDHSY 10 Unmodified _FPDTGSDHSY_ 0 0 0 ENSG00000168286|ENST00000303596|THAP11 ENSG00000168286|ENST00000303596|THAP11 ENSG00000168286|ENST00000303596|THAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7289428710938 2 563.22781 1124.44107 -0.27346 -0.00015402 2.2713 0.0012792 1.9978 0.0011252 563.2289999128282 28.832 0.67478 28.832 28.467 29.142 0 71 33 3 0 0 0 0.0020965 4 14952 14749;14840;14952;15051 108 50.526 1 2167500 12940 7742 8896 9075 15046;15047;15048;15049 15048 -0.11617495455084281 FPDTGSDHSY 10 Unmodified _FPDTGSDHSY_ 0 0 0 ENSG00000168286|ENST00000303596|THAP11 ENSG00000168286|ENST00000303596|THAP11 ENSG00000168286|ENST00000303596|THAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2293090820312 2 563.22781 1124.44107 -0.096507 -5.4355E-05 1.3139 0.00074003 1.2174 0.00068568 563.2286875540237 29.449 0.16238 29.449 29.308 29.47 0 13 7 2 0 0 0 0.16524 1 15212 15212 37.974 14.826 1 814610 12941 7742 8896 9075 15050 15050 -0.11617495455084281 FPDTPLAL 8 Unmodified _FPDTPLAL_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.4724731445312 1 873.471646 872.46437 0.14158 0.00012366 0.70352 0.0006145 0.8451 0.00073817 873.4720209219162 79.602 0.42563 79.602 79.35 79.775 0 30 17 2 0 0 0 0.46494 1 44226 44226 38.151 6.0342 1 616920 12942 4131 8897 9076 15051 15051 0.02303595120179125 FPDTPLAL 8 Unmodified _FPDTPLAL_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.4739379882812 1 873.471646 872.46437 0.34827 0.0003042 0.74579 0.00065143 1.0941 0.00095563 873.4722982688897 79.981 0.54498 79.492 79.312 79.857 -0.48932 40 21 3 0 0 0 0.11943 2 43867 43769;43867 93.883 50.915 1 1537100 12943 4131 8897 9076 15052;15053 15053 0.02303595120179125 FPDTPLAL 8 Unmodified _FPDTPLAL_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10792469-10795138:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MSMS AL20221201_MKP_PDAC_01 4 437.2397766113281 2 437.239461 872.46437 NaN NaN NaN NaN NaN NaN NaN 87.522 1 81.347 80.847 81.847 -6.1757 0 0 0 0.26291 1 57721 57721 67.035 24.941 1 12944 4131 8897 9076 15054 15054 0.02303595120179125 FPDVGHLY 8 Unmodified _FPDVGHLY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1 ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7436828613281 2 474.23471 946.454868 0.41059 0.00019472 0.85252 0.0004043 1.2631 0.00059901 474.23449238993163 58.134 0.41045 57.645 57.43 57.84 -0.48974 36 19 3 0 0 0 8.7369 1 31545 31545 34.187 14.748 1 4277600 12945 6453;16293 8898 9077 15055 15055 -0.020501731653325805 FPDVGHLY 8 Unmodified _FPDVGHLY_ 0 0 0 ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1 ENSG00000156453|ENST00000287008|PCDH1;nc|ENSG00000156453|Q08174|PCDH1 ENSG00000156453|ENST00000287008|PCDH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2352600097656 2 474.23471 946.454868 1.3946 0.00066139 -0.015316 -7.2634E-06 1.3793 0.00065413 474.2344901632391 64.442 0.57738 58.267 57.996 58.574 -6.1757 43 31 2 0 0 0 0.18701 2 41849 41679;41849 75.128 22.435 1 21437000 12946 6453;16293 8898 9077 15056;15057 15057 -0.020501731653325805 FPDVLHFHF 9 Unmodified _FPDVLHFHF_ 0 0 0 ENST00000480552.5_1_7:140156054-140156144:-|nuORF ENST00000480552.5_1_7:140156054-140156144:-|nuORF ENST00000480552.5_1_7:140156054-140156144:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7918090820312 2 579.790184 1157.56581 NaN NaN NaN NaN NaN NaN NaN 79.57 1 79.081 78.581 79.581 -0.48932 0 0 0 0.7453 1 43583 43583 7.9102 0 1 12947 14060 8899 9078 15058 15058 -0.0066653345725171675 FPDVLVHRL 9 Unmodified _FPDVLVHRL_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2;ENST00000567869.1_1_15:28436080-28447805:-|nuORF ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8812866210938 3 365.881831 1094.62366 NaN NaN NaN NaN NaN NaN NaN 56.569 1 56.5 56 57 -0.068737 0 0 0 0.45218 1 30775 30775 17.443 12.546 1 12948 4088 8900 9079 15059 15059 0.0801372846817685 FPDVVNCM 8 Carbamidomethyl (C),Oxidation (M) _FPDVVNC(Carbamidomethyl (C))M(Oxidation (M))_ FPDVVNC(1)M FPDVVNCM(1) FPDVVNC(54)M FPDVVNCM(54) 0 1 1 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000473606.1_1_22:29755773-29763232:-|nuORF;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2102661132812 2 499.209521 996.404488 0.96466 0.00048157 -0.68048 -0.0003397 0.28418 0.00014186 499.20944656774196 46.276 0.28114 46.276 46.131 46.412 0 29 13 3 0 0 0 0.31612 1 25296 25296 53.576 41.935 1 2950500 12949 1783;329 8901 9080 15060 15060 12 36 -0.09385786876998736 FPDWIWVQEKQ 11 Unmodified _FPDWIWVQEKQ_ 0 0 0 REV__ENST00000549336.5_1_12:48236023-48236164:-|nuORF REV__ENST00000549336.5_1_12:48236023-48236164:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.5825805664062 3 492.58211 1474.7245 0.69425 0.00034198 -0.38518 -0.00018973 0.30907 0.00015224 492.58199102868997 18.384 0.28435 15.762 15.638 15.923 -2.6215 58 25 3 0 0 0 0.71341 1 9766 9766 1.2148 0 1 5689900 + 12950 28695 8902 9081 15061 15061 0.00612715660372487 FPEAAQVAY 9 Unmodified _FPEAAQVAY_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2456970214844 2 498.245275 994.475997 1.4821 0.00073845 -0.75563 -0.00037649 0.72647 0.00036196 498.2449960016725 58.517 0.41782 52.443 52.2 52.618 -6.0745 32 22 2 0 0 0 0.031062 1 37497 37497 54.774 20.372 1 10267000 12951 9900 8903 9082 15062 15062 -0.021462078564923104 FPEADKVRTM 10 Unmodified _FPEADKVRTM_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.537109375 3 398.537624 1192.59104 1.098 0.00043758 -1.9876 -0.00079215 -0.88969 -0.00035457 398.53640496290956 36.897 0.3913 32.614 32.405 32.796 -4.2835 71 23 4 0 0 0 0.39161 1 21548 21548 22.109 11.309 1 50461000 12952 9221 8904 9083 15063 15063 0.00245153283003674 FPEADKVRTM 10 Unmodified _FPEADKVRTM_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3031005859375 2 597.302798 1192.59104 0.50181 0.00029973 0.48874 0.00029193 0.99055 0.00059166 597.3020592181541 36.866 0.24615 32.582 32.49 32.736 -4.2835 28 14 2 0 0 0 0.072854 1 21596 21596 66.683 22.911 1 7517700 12953 9221 8904 9083 15064 15064 0.00245153283003674 FPEAEKLVTY 10 Unmodified _FPEAEKLVTY_ 0 0 0 ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.8134765625 2 598.813522 1195.61249 0.25517 0.0001528 0.026178 1.5676E-05 0.28135 0.00016848 598.8131910833226 53.302 0.26673 53.302 53.195 53.462 0 18 11 2 0 0 0 0.095172 1 29571 29571 47.732 20.103 1 2076200 12954 10314 8905 9084 15065 15065 0.022508615833885415 FPEAEKLVTY 10 Unmodified _FPEAEKLVTY_ 0 0 0 ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8134765625 2 598.813522 1195.61249 0.42116 0.00025219 0.25468 0.0001525 0.67583 0.0004047 598.813495088038 53.945 0.29976 53.478 53.306 53.606 -0.46664 30 14 3 0 0 0 0.07026 1 29168 29168 53.317 35.182 1 3722600 12955 10314 8905 9084 15066 15066 0.022508615833885415 FPEAEKLVTY 10 Unmodified _FPEAEKLVTY_ 0 0 0 ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8143310546875 2 598.813522 1195.61249 0.38806 0.00023238 1.1538 0.00069093 1.5419 0.00092331 598.8142089200728 60.327 0.36166 54.212 54.041 54.402 -6.1147 33 18 3 0 0 0 0.0040103 1 38795 38795 101.54 53.795 1 17740000 12956 10314 8905 9084 15067 15067 0.022508615833885415 FPEAFSSIHY 10 Unmodified _FPEAFSSIHY_ 0 0 0 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2838745117188 2 599.282389 1196.55022 0.39858 0.00023886 1.4868 0.00089099 1.8853 0.0011298 599.2836229382277 63.205 0.28353 62.719 62.622 62.905 -0.48617 22 12 2 0 0 0 0.11755 2 34484 34444;34484 43.858 29.02 1 1481200 12957 7397 8906 9085 15068;15069 15069 -0.04018864764952923 FPEASPATL 9 Unmodified _FPEASPATL_ 0 0 0 ENSG00000168255|ENST00000513506|POLR2J3;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENST00000504157.5_1_7:102207439-102208488:-|nuORF;ENST00000608621.5_1_7:102202646-102208488:-|nuORF;ENST00000476151.5_1_7:102281096-102307568:-|nuORF;ENST00000427076.5_1_7:44027725-44054350:-|nuORF;ENST00000422304.1_1_7:44027725-44058742:-|nuORF ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7399291992188 2 466.739825 931.465098 0.95474 0.00044561 -0.53279 -0.00024868 0.42194 0.00019694 466.73927885346177 53.984 0.64508 53.984 53.685 54.33 0 45 29 3 0 0 0 0.038285 2 29862 29862;29979 50.855 18.738 1 2598600 12958 7734 8907 9086 15070;15071 15070 -0.0033761023075840058 FPEASPATL 9 Unmodified _FPEASPATL_ 0 0 0 ENSG00000168255|ENST00000513506|POLR2J3;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENST00000504157.5_1_7:102207439-102208488:-|nuORF;ENST00000608621.5_1_7:102202646-102208488:-|nuORF;ENST00000476151.5_1_7:102281096-102307568:-|nuORF;ENST00000427076.5_1_7:44027725-44054350:-|nuORF;ENST00000422304.1_1_7:44027725-44058742:-|nuORF ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4725952148438 1 932.472374 931.465098 0.84944 0.00079208 -1.4347 -0.0013378 -0.58525 -0.00054573 932.4717282264503 53.896 0.32207 53.896 53.748 54.07 0 17 14 2 0 0 0 0.03568 1 29938 29938 52.268 18.166 1 624300 12959 7734 8907 9086 15072 15072 -0.0033761023075840058 FPEDADTAQI 10 Unmodified _FPEDADTAQI_ 0 0 0 REV__ENSG00000079112|ENST00000027335|CDH17 REV__ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.755615234375 2 553.753661 1105.49277 0.38702 0.00021431 0.45157 0.00025006 0.83859 0.00046437 553.7538796130392 62.3 1.2485 62.3 61.597 62.846 0 125 64 2 0 0 0 0.6067 1 34392 34392 10.8 0.61611 1 8499700 + 12960 17641 8908 9087 15073 15073 -0.05575751761216452 FPEDCLLTQVF 11 Carbamidomethyl (C) _FPEDC(Carbamidomethyl (C))LLTQVF_ FPEDC(1)LLTQVF FPEDC(83)LLTQVF 0 1 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000473076.1_1_1:182850471-182852465:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.8300170898438 2 684.828846 1367.64314 1.4129 0.00096761 -0.59777 -0.00040937 0.81515 0.00055824 684.8285423934042 100.31 0.2578 94.137 93.996 94.254 -6.1757 41 16 3 0 0 0 0.0010665 1 66988 66988 82.529 48.128 1 143960000 12961 4745 8909 9088 15074 15074 484 -0.02597728093905971 FPEDFTLPI 9 Unmodified _FPEDFTLPI_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.775146484375 2 539.776408 1077.53826 -0.29391 -0.00015865 -3.1676 -0.0017098 -3.4615 -0.0018685 539.7745935003226 31.93 0.70798 31.93 31.418 32.126 0 43 34 2 0 0 0 0.32871 1 16629 16629 15.847 0.5987 1 1486000 + 12962 22004 8910 9089 15075 15075 0.0025951849186185427 FPEDFTLPI 9 Unmodified _FPEDFTLPI_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.776408 1077.53826 -0.29391 -0.00015865 -3.1676 -0.0017098 -3.4615 -0.0018685 539.7745935003226 31.93 0.70798 31.93 31.418 32.126 0 0 0 NaN 15.847 43 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1486000 + 12963 22004 8910 9089 0.0025951849186185427 FPEDIKIRDAY 11 Unmodified _FPEDIKIRDAY_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2381591796875 3 456.238232 1365.69287 0.84482 0.00038544 -0.28306 -0.00012914 0.56176 0.0002563 456.2380814821976 47.479 0.66397 47.479 47.125 47.789 0 73 30 3 0 0 0 0.2905 2 25951 25951;26068 27.289 21.421 1 3922200 12964 2134 8911 9090 15076;15077 15076 0.0246472290643851 FPEDIKIRDAY 11 Unmodified _FPEDIKIRDAY_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2391052246094 3 456.238232 1365.69287 0.49539 0.00022602 0.22589 0.00010306 0.72128 0.00032908 456.2382820391186 47.743 0.64571 47.39 47.064 47.71 -0.3526 59 31 3 0 0 0 0.2905 2 25506 25506;25609 27.289 17.525 1 4119600 12965 2134 8911 9090 15078;15079 15078 0.0246472290643851 FPEDIKIRDAY 11 Unmodified _FPEDIKIRDAY_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.572265625 3 456.238232 1365.69287 0.65466 0.00029868 0.6065 0.00027671 1.2612 0.00057539 456.2386408141964 53.28 0.33864 47.475 47.251 47.59 -5.8042 27 20 2 0 0 0 0.30838 1 33735 33735 26.346 20.111 1 18574000 12966 2134 8911 9090 15080 15080 0.0246472290643851 FPEDIKIRDAY 11 Unmodified _FPEDIKIRDAY_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MSMS AL20221201_MKP_PDAC_01 4 456.2384338378906 3 456.238232 1365.69287 NaN NaN NaN NaN NaN NaN NaN 53.597 1 47.793 47.293 48.293 -5.8042 0 0 0 0.33142 1 33896 33896 31.446 22.202 1 12967 2134 8911 9090 15081 15081 0.0246472290643851 FPEDLENDIR 10 Unmodified _FPEDLENDIR_ 0 0 0 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5356750488281 3 416.534937 1246.58298 0.0066095 2.7531E-06 1.2923 0.00053829 1.2989 0.00054104 416.5355337132425 20.487 0.17799 20.497 20.423 20.601 0.010553 12 8 2 0 0 0 0.6785 1 10468 10468 2.8433 0.59056 1 1110700 12968 4087 8912 9091 15082 15082 -0.030447024327713734 FPEDLRTEL 9 Unmodified _FPEDLRTEL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.288330078125 2 560.287671 1118.56079 -0.31409 -0.00017598 0.36388 0.00020388 0.049793 2.7899E-05 560.2877224941011 55.393 0.60618 55.393 55.005 55.611 0 34 26 2 0 0 0 0.1685 1 30853 30853 26.268 7.0112 1 2051900 12969 1241 8913 9092 15083 15083 0.0062511788946721936 FPEDTVITY 9 Unmodified _FPEDTVITY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7637939453125 2 542.763497 1083.51244 0.14405 7.8188E-05 -0.82309 -0.00044674 -0.67903 -0.00036855 542.7631560553946 62.294 1.6416 62.294 61.389 63.031 0 300 82 4 0 0 0 0.016184 8 34577 34373;34475;34577;34677;34781;34886;34987;35098 67.344 44.195 1 102080000 12970 53 8914 9093 15084;15085;15086;15087;15088;15089;15090;15091 15086 -0.025973757504289097 FPEDTVITY 9 Unmodified _FPEDTVITY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7640380859375 2 542.763497 1083.51244 0.33796 0.00018343 -0.69325 -0.00037627 -0.35529 -0.00019284 542.7635736614295 62.857 1.1589 62.371 61.833 62.992 -0.48617 88 55 3 0 0 0 0.016184 3 34168 34057;34168;34273 67.344 44.195 1 14925000 12971 53 8914 9093 15092;15093;15094 15093 -0.025973757504289097 FPEDTVITY 9 Unmodified _FPEDTVITY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.763671875 2 542.763497 1083.51244 0.78746 0.00042741 -0.090703 -4.923E-05 0.69676 0.00037818 542.7634401789019 70.304 1.2433 64.129 63.544 64.787 -6.1757 216 68 4 0 0 0 0.016184 6 45699 45584;45699;45828;45950;46076;46200 67.344 44.195 1 288710000 12972 53 8914 9093 15095;15096;15097;15098;15099;15100 15096 -0.025973757504289097 FPEDTVITY 9 Unmodified _FPEDTVITY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.763497 1083.51244 0.28803 0.00015633 -0.52932 -0.0002873 -0.24129 -0.00013097 542.7632946172681 62.182 0.21554 62.149 61.966 62.181 -0.032787 -0.12236 0.00024135 NaN 67.344 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2392600 12973 53 8914 9093 -0.025973757504289097 FPEDVAPAL 9 Unmodified _FPEDVAPAL_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000497706.5_1_6:31865631-31903710:+|nuORF ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4852294921875 1 958.488024 957.480748 -0.13059 -0.00012517 0.39969 0.0003831 0.26911 0.00025794 958.4883054433199 65.293 0.53394 65.293 64.994 65.528 0 35 21 2 0 0 0 0.052168 3 36418 36321;36418;36517 44.407 19.733 1 624190 12974 7465 8915 9094 15101;15102;15103 15102 0.0003067628628059538 FPEEAVLQQAF 11 Unmodified _FPEEAVLQQAF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.8219604492188 2 639.821878 1277.6292 0.018326 1.1725E-05 0.89836 0.00057479 0.91668 0.00058651 639.8222634517357 79.196 0.30502 79.196 79.021 79.326 0 23 13 2 0 0 0 0.59689 2 43955 43955;44052 11.495 6.5977 1 1177200 12975 2273 8916 9095 15104;15105 15104 0.0014936246934666997 FPEEAVLQQAF 11 Unmodified _FPEEAVLQQAF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3239135742188 2 639.821878 1277.6292 0.75166 0.00048093 -0.67688 -0.00043308 0.074782 4.7847E-05 639.8213291595947 79.764 0.33276 79.275 79.096 79.428 -0.48932 37 14 3 0 0 0 0.5229 2 43648 43648;43746 15.248 9.0427 1 2593400 12976 2273 8916 9095 15106;15107 15106 0.0014936246934666997 FPEEAVLQQAF 11 Unmodified _FPEEAVLQQAF_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1;ENST00000589343.1_1_19:55750771-55751051:-|nuORF ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.3237915039062 2 639.821878 1277.6292 0.91331 0.00058435 -0.19273 -0.00012331 0.72058 0.00046104 639.8215327289636 87.631 0.45229 81.456 81.221 81.673 -6.1757 46 24 3 0 0 0 0.028752 1 57772 57772 55.503 30.512 1 12892000 12977 2273 8916 9095 15108 15108 0.0014936246934666997 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.779052734375 2 578.779679 1155.5448 -0.22469 -0.00013005 -1.8423 -0.0010663 -2.067 -0.0011963 579.2796284100929 20.39 0.037207 20.39 20.357 20.394 0 5 4 2 0 0 0 0.11784 1 10256 10256 31.268 16.687 1 1302600 12978 6109 8917 9096 15109 15109 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.188720703125 3 386.188878 1155.5448 -0.44283 -0.00017102 0.00021264 8.212E-08 -0.44262 -0.00017094 386.1888445865426 20.857 1.3489 20.857 20.241 21.59 0 577 187 4 0 0 0 0.025842 6 10395 10299;10395;10493;10591;10690;10789 46.022 26.34 1 55780000 12979 6109 8917 9096 15110;15111;15112;15113;15114;15115 15111 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.77978515625 2 578.779679 1155.5448 -0.20457 -0.0001184 -0.20924 -0.0001211 -0.41381 -0.0002395 578.7794433057504 20.888 1.0036 20.888 20.399 21.402 0 411 145 4 0 0 0 0.0026383 5 10359 10359;10458;10556;10655;10765 128.57 77.723 1 19460000 12980 6109 8917 9096 15116;15117;15118;15119;15120 15116 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.1892700195312 3 386.188878 1155.5448 0.061752 2.3848E-05 0.25752 9.9451E-05 0.31927 0.0001233 386.1889898435881 20.826 0.67938 20.837 20.308 20.988 0.010551 62 35 2 0 0 0 0.45045 2 10556 10459;10556 10.151 4.4187 1 1478400 12981 6109 8917 9096 15121;15122 15122 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.1893310546875 3 386.188878 1155.5448 0.54899 0.00021202 0.67514 0.00026073 1.2241 0.00047275 386.1889936717865 23.411 1.3519 20.632 20.089 21.441 -2.7784 354 91 6 0 0 0 0.017075 7 12706 12373;12484;12602;12706;12810;12924;13041 61.09 37.3 1 142420000 12982 6109 8917 9096 15123;15124;15125;15126;15127;15128;15129 15126 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7794189453125 2 578.779679 1155.5448 0.17843 0.00010327 0.28324 0.00016393 0.46167 0.00026721 578.7797098424746 23.321 1.0803 20.543 20.217 21.297 -2.7784 193 75 3 0 0 0 0.0082981 6 12465 12465;12576;12685;12788;12898;13015 97.741 64.15 1 19899000 12983 6109 8917 9096 15130;15131;15132;15133;15134;15135 15130 -0.02674588347417739 FPEEDKKTY 9 Unmodified _FPEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 386.188878 1155.5448 0.067378 2.6021E-05 -2.2165 -0.00085597 -2.1491 -0.00082995 386.5219519940973 21.036 0.077879 21.046 20.991 21.069 0.010553 0.094467 -0.0025601 NaN 46.022 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1285500 12984 6109 8917 9096 -0.02674588347417739 FPEEFDKTSF 10 Unmodified _FPEEFDKTSF_ 0 0 0 ENSG00000111670|ENST00000299314|GNPTAB ENSG00000111670|ENST00000299314|GNPTAB ENSG00000111670|ENST00000299314|GNPTAB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.7854614257812 2 623.784961 1245.55537 NaN NaN NaN NaN NaN NaN NaN 55.496 1 55.496 54.996 55.996 0 0 0 0 0.54704 1 30830 30830 33.445 12.991 1 12985 2812 8918 9097 15136 15136 -0.05758605693017671 FPEEFELFI 9 Unmodified _FPEEFELFI_ 0 0 0 REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8628540039062 3 390.862102 1169.56448 -0.29874 -0.00011676 0.37534 0.0001467 0.0766 2.994E-05 390.8622830881057 31.277 0.91758 31.307 30.904 31.822 0.030106 95 40 3 0 0 0 0.55144 1 16250 16250 2.4985 0 1 5851600 + 12986 26011 8919 9098 15137 15137 -0.013522123366556116 FPEELTQTF 9 Unmodified _FPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.26904296875 2 556.268947 1110.52334 0.54603 0.00030374 -0.32332 -0.00017985 0.22271 0.00012389 556.2688655010279 69.136 0.93718 69.136 68.717 69.654 0 141 41 4 0 0 0 0.010818 5 38482 38385;38482;38581;38677;38775 78.149 40.175 1 14321000 12987 10781 8920 9099 15138;15139;15140;15141;15142 15139 -0.027499733761487732 FPEELTQTF 9 Unmodified _FPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2699584960938 2 556.268947 1110.52334 0.11737 6.5291E-05 1.0393 0.00057815 1.1567 0.00064344 556.2695551183115 69.662 0.7432 69.183 68.81 69.553 -0.47903 108 32 4 0 0 0 0.010818 3 38090 37992;38090;38192 78.149 43.783 1 9357400 12988 10781 8920 9099 15143;15144;15145 15144 -0.027499733761487732 FPEELTQTF 9 Unmodified _FPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2695922851562 2 556.268947 1110.52334 0.61293 0.00034095 0.16705 9.2927E-05 0.77998 0.00043388 556.2690285914331 77.434 1.0931 71.259 70.68 71.773 -6.1757 155 62 3 0 0 0 0.031062 3 50486 50486;50609;50727 54.774 38.926 1 75019000 12989 10781 8920 9099 15146;15147;15148 15146 -0.027499733761487732 FPEELTQTF 9 Unmodified _FPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.268947 1110.52334 0.74515 0.0004145 0.47361 0.00026346 1.2188 0.00067796 556.771188300513 69.223 0.2851 69.254 69.01 69.295 0.030914 0.063085 0.00025447 NaN 78.149 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2453400 12990 10781 8920 9099 -0.027499733761487732 FPEENIYKVY 10 Unmodified _FPEENIYKVY_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.8260498046875 2 651.324254 1300.63395 -0.79799 -0.00051975 0.030233 1.9692E-05 -0.76775 -0.00050006 651.3241582685416 55.634 0.62742 55.634 55.241 55.869 0 109 43 4 0 0 0 0.017314 3 30955 30743;30848;30955 97.741 84.699 1 10500000 12991 6563 8921 9100 15149;15150;15151 15151 -0.0043375338791520335 FPEENIYKVY 10 Unmodified _FPEENIYKVY_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3236694335938 2 651.324254 1300.63395 -0.81102 -0.00052824 -0.24211 -0.00015769 -1.0531 -0.00068593 651.3241044094927 56.241 0.52665 55.755 55.414 55.941 -0.48554 76 26 3 0 0 0 0.014982 3 30479 30372;30479;30589 81.915 73.76 1 24954000 12992 6563 8921 9100 15152;15153;15154 15153 -0.0043375338791520335 FPEENIYKVY 10 Unmodified _FPEENIYKVY_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.3246459960938 2 651.324254 1300.63395 1.5316 0.00099758 -0.53636 -0.00034935 0.99526 0.00064824 651.3238916909612 62.487 0.93079 56.312 55.905 56.836 -6.1757 157 49 4 0 0 0 0.0041527 5 40595 40069;40197;40325;40454;40595 124.95 79.253 1 144380000 12993 6563 8921 9100 15155;15156;15157;15158;15159 15159 -0.0043375338791520335 FPEENNDKK 9 Unmodified _FPEENNDKK_ 0 0 0 ENSG00000116678|ENST00000349533|LEPR ENSG00000116678|ENST00000349533|LEPR ENSG00000116678|ENST00000349533|LEPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1811218261719 3 374.180494 1119.51965 NaN NaN NaN NaN NaN NaN NaN 20.625 1 20.625 20.125 21.125 0 0 0 0 0.84385 1 10388 10388 2.2828 0 1 12994 3239 8922 9101 15160 15160 -0.03532643149992509 FPEERPEVL 9 Unmodified _FPEERPEVL_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2896728515625 2 558.290214 1114.56587 0.63254 0.00035314 0.6141 0.00034284 1.2466 0.00069598 558.2907415130657 47.431 0.86611 47.431 46.901 47.767 0 84 40 3 0 0 0 0.062454 3 25780 25780;25885;25987 41.956 18.166 1 5382300 12995 7000 8923 9102 15161;15162;15163 15161 0.01317421752082737 FPEERPEVL 9 Unmodified _FPEERPEVL_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2907104492188 2 558.290214 1114.56587 1.0795 0.00060268 -0.35089 -0.0001959 0.72863 0.00040679 558.2908383237094 53.469 0.24238 47.665 47.544 47.786 -5.8042 20 15 2 0 0 0 0.029718 1 33802 33802 55.503 23.197 1 17904000 12996 7000 8923 9102 15164 15164 0.01317421752082737 FPEESSALIEF 11 Unmodified _FPEESSALIEF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8069458007812 2 634.805894 1267.59723 NaN NaN NaN NaN NaN NaN NaN 83.9 1 83.9 83.4 84.4 0 0 0 0 0.93224 1 46523 46523 5.7319 0 1 12997 8296;16388 8924 9103 15165 15165 -0.02586050004470053 FPEESSALIEF 11 Unmodified _FPEESSALIEF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8041381835938 2 634.805894 1267.59723 0.18441 0.00011707 0.59958 0.00038062 0.78399 0.00049768 634.8060821053067 84.435 0.68343 83.935 83.594 84.278 -0.49961 45 30 2 0 0 0 0.71341 1 46101 46101 2.9952 1.151 1 725480 12998 8296;16388 8924 9103 15166 15166 -0.02586050004470053 FPEEVIATI 9 Unmodified _FPEEVIATI_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7772827148438 2 509.776408 1017.53826 0.33435 0.00017044 -0.43752 -0.00022304 -0.10317 -5.2593E-05 509.7764985816427 76.674 0.52747 76.674 76.468 76.996 0 56 28 3 0 0 0 0.042911 2 42628 42527;42628 48.346 7.165 1 4025900 12999 9480 8925 9104 15167;15168 15168 0.030195184918625273 FPEEVIATI 9 Unmodified _FPEEVIATI_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7794799804688 2 509.776408 1017.53826 -0.67598 -0.0003446 1.7312 0.00088255 1.0553 0.00053795 509.77745452210485 77.126 0.45868 76.643 76.497 76.956 -0.4826 30 20 2 0 0 0 0.2143 1 42205 42205 21.747 6.9084 1 890830 13000 9480 8925 9104 15169 15169 0.030195184918625273 FPEEVIATIF 10 Unmodified _FPEEVIATIF_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.3113403320312 2 583.310615 1164.60668 0.15481 9.0304E-05 0.64487 0.00037616 0.79969 0.00046647 583.3112468174867 99.769 0.16038 99.769 99.674 99.834 0 12 5 3 0 0 0 0.67033 1 55094 55094 6.2058 2.6093 1 1375500 13001 9480 8926 9105 15170 15170 0.030957630717011853 FPEEVIATIF 10 Unmodified _FPEEVIATIF_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3115844726562 2 583.310615 1164.60668 0.26517 0.00015468 -0.59446 -0.00034676 -0.32929 -0.00019208 583.3101411296602 99.886 0.20247 99.728 99.613 99.815 -0.15751 23 6 5 0 0 0 0.16524 1 54510 54510 37.974 18.535 1 20811000 13002 9480 8926 9105 15171 15171 0.030957630717011853 FPEEVIATIF 10 Unmodified _FPEEVIATIF_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.312255859375 2 583.310615 1164.60668 3.3457 0.0019516 -2.2005 -0.0012836 1.1452 0.00066801 583.3092523449938 99.773 0.18839 99.736 99.639 99.827 -0.036301 17 6 4 0 0 0 0.024981 1 55418 55418 71.134 40.909 1 12232000 13003 9480 8926 9105 15172 15172 0.030957630717011853 FPEEVIATIF 10 Unmodified _FPEEVIATIF_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;nc|ENSG00000186480|O15503-2|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3113403320312 2 583.310615 1164.60668 1.3813 0.00080573 -0.068362 -3.9876E-05 1.3129 0.00076585 583.3105739002204 101.02 0.22217 94.839 94.717 94.939 -6.1757 36 12 4 0 0 0 0.043729 1 67682 67682 61.357 49.717 1 359000000 13004 9480 8926 9105 15173 15173 0.030957630717011853 FPEFPATRAY 10 Unmodified _FPEFPATRAY_ 0 0 0 ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50;ENST00000460064.1_1_3:191078900-191087884:+|nuORF ENSG00000152492|ENST00000392455|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7982788085938 2 599.798206 1197.58186 0.45778 0.00027457 -0.80231 -0.00048123 -0.34454 -0.00020665 600.2988879863982 57.626 0.47306 57.136 56.858 57.331 -0.48974 36 22 2 0 0 0 0.035244 2 31278 31278;31379 65.474 31.072 1 3931300 13005 6191 8927 9106 15174;15175 15174 -0.00902872010988176 FPEFPATRAY 10 Unmodified _FPEFPATRAY_ 0 0 0 ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50;ENST00000460064.1_1_3:191078900-191087884:+|nuORF ENSG00000152492|ENST00000392455|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.2998046875 2 599.798206 1197.58186 0.6084 0.00036492 0.4278 0.0002566 1.0362 0.00062151 599.7982189488168 57.265 0.43982 57.199 56.978 57.418 -0.066036 41 21 3 0 0 0 0.052718 1 31137 31137 57.249 35.712 1 3864000 13006 6191 8927 9106 15176 15176 -0.00902872010988176 FPEFPATRAY 10 Unmodified _FPEFPATRAY_ 0 0 0 ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50;ENST00000460064.1_1_3:191078900-191087884:+|nuORF ENSG00000152492|ENST00000392455|CCDC50 ENSG00000152492|ENST00000392455|CCDC50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.301025390625 2 599.798206 1197.58186 0.17445 0.00010463 0.58616 0.00035158 0.76061 0.00045621 600.2999411092517 63.233 0.72794 57.057 56.759 57.487 -6.1757 82 40 3 0 0 0 0.012329 3 40895 40756;40895;41039 83.429 45.253 1 37479000 13007 6191 8927 9106 15177;15178;15179 15178 -0.00902872010988176 FPEGGQVVITF 11 Unmodified _FPEGGQVVITF_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.315185546875 2 597.313689 1192.61282 0.67215 0.00040148 1.2479 0.00074542 1.9201 0.0011469 597.3144686846246 82.88 0.8287 82.942 82.5 83.329 0.062004 55 31 2 0 0 0 0.38865 1 45855 45855 27.223 14.181 1 2688800 13008 7532 8928 9107 15180 15180 0.02422281303233831 FPEGGQVVITF 11 Unmodified _FPEGGQVVITF_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3135375976562 2 597.313689 1192.61282 0.63996 0.00038226 0.74126 0.00044276 1.3812 0.00082502 597.313570253448 90.776 1.3042 84.601 84.008 85.312 -6.1757 195 76 3 0 0 0 1.725E-06 6 60342 59696;59829;59958;60088;60214;60342 103.42 63.47 1 62776000 13009 7532 8928 9107 15181;15182;15183;15184;15185;15186 15186 0.02422281303233831 FPEGLFYEF 9 Unmodified _FPEGLFYEF_ 0 0 0 nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4;ENST00000476932.5_1_2:128412197-128421974:-|nuORF nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF nc|ENSG00000256977|P0CW19-2|LIMS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7691040039062 2 574.768583 1147.52261 0.48882 0.00028096 0.82037 0.00047152 1.3092 0.00075248 574.7688385915346 99.408 0.31248 99.25 99.094 99.407 -0.1575 24 10 3 0 0 0 0.58145 1 54316 54316 4.3292 2.0265 1 1007100 13010 1074;7911;13990 8929 9108 15187 15187 -0.045247680252032296 FPEGLFYEF 9 Unmodified _FPEGLFYEF_ 0 0 0 nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENST00000496653.4_1_2:109271530-109287317:+|nuORF;ENST00000479168.1_2:110656305-110672068:+|nuORF;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4;ENST00000476932.5_1_2:128412197-128421974:-|nuORF nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000256977|P0CW19-2|LIMS3;ENST00000476932.5_1_2:128412197-128421974:-|nuORF nc|ENSG00000256977|P0CW19-2|LIMS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.768583 1147.52261 4.2933 0.0024677 0.55241 0.00031751 4.8458 0.0027852 574.768720429051 99.251 0.22442 99.223 99.077 99.302 -0.028282 -0.013572 -0.00021655 NaN 4.3292 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1191600 13011 1074;7911;13990 8929 9108 -0.045247680252032296 FPEGLVIQAY 10 Unmodified _FPEGLVIQAY_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8020629882812 2 568.802957 1135.59136 1.1275 0.00064131 -0.95313 -0.00054214 0.17434 9.9164E-05 568.802457236453 79.836 1.2588 79.346 78.75 80.009 -0.48932 126 52 3 0 0 0 0.2667 2 43667 43563;43667 41.84 28.797 1 3546500 13012 3422 8930 9109 15188;15189 15189 0.028988962745188473 FPEGLVIQAY 10 Unmodified _FPEGLVIQAY_ 0 0 0 ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B ENSG00000119318|ENST00000358015|RAD23B ENSG00000119318|ENST00000358015|RAD23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8031005859375 2 568.802957 1135.59136 1.2465 0.00070899 -0.95535 -0.00054341 0.29111 0.00016558 569.3036166022388 87.634 1.1863 81.458 80.982 82.168 -6.1757 152 65 3 0 0 0 0.45406 2 57741 57741;57867 27.629 11.48 1 40425000 13013 3422 8930 9109 15190;15191 15190 0.028988962745188473 FPEGPAVAV 9 Unmodified _FPEGPAVAV_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4669189453125 1 886.466895 885.459619 0.36091 0.00031993 0.42672 0.00037827 0.78762 0.0006982 886.4670798847999 57.166 0.63231 57.166 56.835 57.467 0 41 27 2 0 0 0 0.070838 2 31784 31784;31892 39.957 24.11 1 774650 13014 4954 8931 9110 15192;15193 15192 0.01230710977426952 FPEGPAVAV 9 Unmodified _FPEGPAVAV_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MSMS AL20221201_MKP_PDAC_01 4 443.7372741699219 2 443.737086 885.459619 NaN NaN NaN NaN NaN NaN NaN 65.235 1 59.06 58.56 59.56 -6.1757 0 0 0 0.17247 1 42336 42336 34.102 9.4286 1 13015 4954 8931 9110 15194 15194 0.01230710977426952 FPEGSVELY 9 Unmodified _FPEGSVELY_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7501831054688 2 520.75039 1039.48623 0.36951 0.00019242 -0.22778 -0.00011861 0.14173 7.3808E-05 520.7502707305094 62.868 1.5887 62.868 62.29 63.879 0 205 79 4 0 0 0 0.023164 5 35118 34826;35118;35222;35326;35447 60.39 22.238 1 10209000 13016 5998;13297 8932 9111 15195;15196;15197;15198;15199 15196 -0.03193644921907435 FPEGSVELY 9 Unmodified _FPEGSVELY_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7509765625 2 520.75039 1039.48623 1.0828 0.00056388 -0.5274 -0.00027464 0.55542 0.00028923 520.7499770892514 70.42 1.2051 64.244 63.78 64.985 -6.1757 116 65 2 0 0 0 0.026094 2 46189 46189;46310 57.471 19.32 1 116230000 13017 5998;13297 8932 9111 15200;15201 15200 -0.03193644921907435 FPEHAVKAY 9 Unmodified _FPEHAVKAY_ 0 0 0 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.2455139160156 3 354.51867 1060.53418 -0.53292 -0.00018893 0.67137 0.00023801 0.13845 4.9083E-05 354.5188562692267 26.618 0.60664 26.618 26.303 26.909 0 48 28 2 0 0 0 0.19891 1 13628 13628 11.495 10.013 1 1695200 13018 3671 8933 9112 15202 15202 0.0063347378879825555 FPEHAVKAY 9 Unmodified _FPEHAVKAY_ 0 0 0 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 MSMS AL20221201_MKP_PDAC_01 4 354.5202331542969 3 354.51867 1060.53418 NaN NaN NaN NaN NaN NaN NaN 29.908 1 26.606 26.106 27.106 -3.3016 0 0 0 0.10759 1 16847 16847 38.615 19.358 1 13019 3671 8933 9112 15203 15203 0.0063347378879825555 FPEHAVKAY 9 Unmodified _FPEHAVKAY_ 0 0 0 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 354.51867 1060.53418 1.23 0.00043606 2.4266 0.00086027 3.6566 0.0012963 354.5193442851341 29.875 0.1254 26.573 26.48 26.606 -3.3016 -0.022339 0.0017925 NaN 11.495 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 13709000 13020 3671 8933 9112 0.0063347378879825555 FPEHIFPAL 9 Unmodified _FPEHIFPAL_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7872314453125 2 535.78711 1069.55967 0.29121 0.00015602 0.215 0.0001152 0.50621 0.00027122 535.7871070956892 78.12 0.73384 78.172 77.867 78.601 0.052452 116 30 5 0 0 0 0.012158 4 43232 43011;43119;43232;43345 74.396 56.261 1 148180000 13021 5009 8934 9113 15204;15205;15206;15207 15206 0.027669483112276794 FPEHIFPAL 9 Unmodified _FPEHIFPAL_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7883911132812 2 535.78711 1069.55967 1.2538 0.00067176 -0.23342 -0.00012507 1.0204 0.00054669 535.7868131302399 96.539 0.70071 90.364 90.007 90.708 -6.1757 160 41 5 0 0 0 0.012158 4 64181 63809;63933;64057;64181 74.396 55.139 1 1186300000 13022 5009 8934 9113 15208;15209;15210;15211 15211 0.027669483112276794 FPEHRVLSF 9 Unmodified _FPEHRVLSF_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8695983886719 3 377.869703 1130.58728 1.2006 0.00045369 -0.13401 -5.0638E-05 1.0666 0.00040305 377.8695134110985 46.619 0.71605 46.586 46.203 46.919 -0.033417 77 34 3 0 0 0 0.062454 3 25076 24963;25076;25188 46.022 24.432 1 4055800 13023 7249 8935 9114 15212;15213;15214 15213 0.027208515714619352 FPEHYAPSVF 10 Unmodified _FPEHYAPSVF_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2860107421875 2 597.284931 1192.55531 0.41702 0.00024908 -0.35334 -0.00021105 0.063682 3.8036E-05 597.2851109632004 57.835 0.67571 57.345 57.066 57.742 -0.48974 53 32 2 0 0 0 0.24625 4 31493 31341;31386;31493;31598 30.637 11.38 1 2958200 13024 5185 8936 9115 15215;15216;15217;15218 15217 -0.033265609023374054 FPEHYAPSVF 10 Unmodified _FPEHYAPSVF_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.284912109375 2 597.284931 1192.55531 0.70093 0.00041866 -1.5345 -0.00091656 -0.83361 -0.0004979 597.2844832498592 63.822 0.56047 57.646 57.242 57.802 -6.1757 51 31 2 0 0 0 0.13391 2 41212 41212;41351 41.84 19.103 1 13683000 13025 5185 8936 9115 15219;15220 15219 -0.033265609023374054 FPEHYAPSVF 10 Unmodified _FPEHYAPSVF_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.286865234375 2 597.284931 1192.55531 0.95671 0.00057143 0.59247 0.00035388 1.5492 0.0009253 597.2851563092258 64.037 0.43897 57.861 57.782 58.221 -6.1757 37 22 2 0 0 0 0.1942 1 41530 41530 34.402 8.1336 1 13887000 13026 5185 8936 9115 15221 15221 -0.033265609023374054 FPEHYAPSVF 10 Unmodified _FPEHYAPSVF_ 0 0 0 ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 597.284931 1192.55531 0.64572 0.00038568 4.0165 0.002399 4.6623 0.0027847 597.7885533308668 57.627 0.25617 57.561 57.458 57.714 -0.066036 -0.15014 0.0034646 NaN 34.402 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1059100 13027 5185 8936 9115 -0.033265609023374054 FPEIDLEKY 9 Unmodified _FPEIDLEKY_ 0 0 0 nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR nc|ENSG00000228716|P00374-2|DHFR nc|ENSG00000228716|P00374-2|DHFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2924194335938 2 577.292422 1152.57029 0.3282 0.00018946 -0.48733 -0.00028133 -0.15914 -9.187E-05 577.2921021725058 65.805 0.7001 65.805 65.475 66.175 0 100 33 4 0 0 0 0.0087923 3 36682 36586;36682;36785 103.42 67.292 1 28759000 13028 10604 8937 9116 15222;15223;15224 15223 0.00010886175004998222 FPEIDLEKY 9 Unmodified _FPEIDLEKY_ 0 0 0 nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR nc|ENSG00000228716|P00374-2|DHFR nc|ENSG00000228716|P00374-2|DHFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.292236328125 2 577.292422 1152.57029 0.21975 0.00012686 -0.44055 -0.00025432 -0.2208 -0.00012747 577.2920446209969 66.297 0.65233 65.814 65.563 66.216 -0.48323 94 33 4 0 0 0 0.0081887 3 36108 36108;36209;36319 93.166 60.86 1 22522000 13029 10604 8937 9116 15225;15226;15227 15225 0.00010886175004998222 FPEIDLEKY 9 Unmodified _FPEIDLEKY_ 0 0 0 nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR nc|ENSG00000228716|P00374-2|DHFR nc|ENSG00000228716|P00374-2|DHFR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 577.292422 1152.57029 1.1315 0.00065323 1.1416 0.00065905 2.2732 0.0013123 577.2936782614863 65.966 0.4343 65.975 65.69 66.125 0.0095673 0.11074 0.0017866 NaN 93.166 29 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4069500 13030 10604 8937 9116 0.00010886175004998222 FPEIHVAQY 9 Unmodified _FPEIHVAQY_ 0 0 0 ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF ENSG00000100603|ENST00000261531|SNW1 ENSG00000100603|ENST00000261531|SNW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2781372070312 2 552.279649 1102.54475 -0.27665 -0.00015279 -1.2454 -0.0006878 -1.522 -0.00084058 552.2791239030375 55.773 0.21487 55.773 55.654 55.869 0 41 22 3 0 0 0 0.053952 1 30951 30951 39.95 24.103 1 13130000 13031 1852 8938 9117 15228 15228 -0.0024254355676021078 FPEIHVAQY 9 Unmodified _FPEIHVAQY_ 0 0 0 ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF ENSG00000100603|ENST00000261531|SNW1 ENSG00000100603|ENST00000261531|SNW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2787475585938 2 552.279649 1102.54475 -0.82384 -0.00045499 0.4488 0.00024786 -0.37503 -0.00020712 552.2798224944628 56.364 0.25282 55.879 55.728 55.981 -0.48554 33 13 4 0 0 0 0.0089732 1 30549 30549 74.929 49.53 1 31928000 13032 1852 8938 9117 15229 15229 -0.0024254355676021078 FPEIHVAQY 9 Unmodified _FPEIHVAQY_ 0 0 0 ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF ENSG00000100603|ENST00000261531|SNW1 ENSG00000100603|ENST00000261531|SNW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2801513671875 2 552.279649 1102.54475 0.77402 0.00042748 -0.22626 -0.00012496 0.54776 0.00030251 552.279564394617 62.279 0.76557 56.103 55.76 56.526 -6.1757 94 41 3 0 0 0 0.0091809 4 40132 40005;40132;40260;40397 82.529 82.529 1 106450000 13033 1852 8938 9117 15230;15231;15232;15233 15231 -0.0024254355676021078 FPEKGYSF 8 Unmodified _FPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7339477539062 2 487.734543 973.454533 NaN NaN NaN NaN NaN NaN NaN 44.521 1 44.521 44.021 45.021 0 0 0 0 0.45366 1 24226 24226 46.021 3.9264 1 13034 6156 8939 9118 15234 15234 -0.03325592885187234 FPEKGYSF 8 Unmodified _FPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7341918945312 2 487.734543 973.454533 NaN NaN NaN NaN NaN NaN NaN 44.603 1 44.287 43.787 44.787 -0.31585 0 0 0 0.54148 1 23802 23802 37.974 1.847 1 13035 6156 8939 9118 15235 15235 -0.03325592885187234 FPEKGYSF 8 Unmodified _FPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7349548339844 2 487.734543 973.454533 1.0116 0.00049341 0.11457 5.5878E-05 1.1262 0.00054929 487.7340841282124 49.554 0.64623 44.101 43.879 44.525 -5.4531 88 40 3 0 0 0 0.18544 3 31014 30885;31014;31144 75.761 14.403 1 39555000 13036 6156 8939 9118 15236;15237;15238 15237 -0.03325592885187234 FPEKGYSF 8 Unmodified _FPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.733154296875 2 487.734543 973.454533 1.0087 0.00049198 -2.682 -0.0013081 -1.6732 -0.0008161 487.7333066344241 49.992 0.30337 44.453 44.377 44.68 -5.5391 25 19 2 0 0 0 0.27285 1 31290 31290 58.679 3.9053 1 16063000 13037 6156 8939 9118 15239 15239 -0.03325592885187234 FPEKGYSF 8 Unmodified _FPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.7341003417969 2 487.734543 973.454533 NaN NaN NaN NaN NaN NaN NaN 49.24 1 43.844 43.344 44.344 -5.3961 0 0 0 0.26516 1 30753 30753 66.457 14.188 1 13038 6156 8939 9118 15240 15240 -0.03325592885187234 FPEKRRMKL 9 Unmodified _FPEKRRMKL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2373962402344 3 402.237621 1203.69103 1.273 0.00051205 -0.58363 -0.00023476 0.68937 0.00027729 402.23730862595875 20.752 0.91804 18.059 17.608 18.526 -2.693 141 53 3 0 0 0 0.46162 1 11152 11152 9.544 2.0669 1 7149900 13039 6383 8940 9119 15241 15241 0.09733435407497382 FPELDSPQL 9 Unmodified _FPELDSPQL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.263671875 2 523.263665 1044.51278 0.4301 0.00022505 0.88262 0.00046184 1.3127 0.0006869 523.2634526685815 69.719 0.53419 69.719 69.4 69.934 0 61 24 3 0 0 0 0.013323 2 38773 38773;38882 71.134 37.119 1 4154200 13040 2059 8941 9120 15242;15243 15242 -0.0076995603058094275 FPELDSPQL 9 Unmodified _FPELDSPQL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19968469-19969442:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2646484375 2 523.263665 1044.51278 0.0074379 3.892E-06 1.9226 0.001006 1.93 0.0010099 523.2640032544481 70.187 0.36588 69.708 69.568 69.934 -0.47903 33 19 3 0 0 0 0.06187 1 38410 38410 42.095 2.1372 1 2525900 13041 2059 8941 9120 15244 15244 -0.0076995603058094275 FPEMAIQHF 9 Unmodified _FPEMAIQHF_ 0 0 0 REV__ENST00000412481.1_2_2:119699870-119702370:+|nuORF REV__ENST00000412481.1_2_2:119699870-119702370:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8523864746094 3 373.84791 1118.5219 1.7309 0.00064708 4.1902 0.0015665 5.9211 0.0022136 374.18298081532026 21.251 0.26675 18.558 18.358 18.624 -2.693 33 15 3 0 0 0 0.39863 1 11283 11283 8.1555 1.9637 1 6004300 + 13042 17099 8942 9121 15245 15245 -0.032618859459034866 FPENVYSVHF 10 Unmodified _FPENVYSVHF_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MSMS AL20221201_MKP_PDAC_01 4 619.3159790039062 2 619.795663 1237.57677 NaN NaN NaN NaN NaN NaN NaN 73.02 1 66.844 66.344 67.344 -6.1757 0 0 0 0.52595 1 47758 47758 24.991 2.2547 1 13043 1915 8943 9122 15246 15246 -0.03251175873651846 FPENYVPTVF 10 Unmodified _FPENYVPTVF_ 0 0 0 ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8007202148438 2 606.800414 1211.58628 0.49739 0.00030182 0.45369 0.0002753 0.95108 0.00057712 606.8005382942199 84.425 0.6302 83.925 83.572 84.202 -0.49961 57 28 3 0 0 0 0.34249 2 46204 46099;46204 24.991 14.917 1 1126000 13044 3180 8944 9123 15247;15248 15248 -0.011054075881247627 FPENYVPTVF 10 Unmodified _FPENYVPTVF_ 0 0 0 ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.801513671875 2 606.800414 1211.58628 0.121 7.3424E-05 0.20689 0.00012554 0.32789 0.00019896 606.8003160951895 92.903 0.64869 86.728 86.315 86.964 -6.1757 64 40 2 0 0 0 0.027759 2 61455 61309;61455 69.105 46.369 1 19804000 13045 3180 8944 9123 15249;15250 15250 -0.011054075881247627 FPEPADLFWKY 11 Unmodified _FPEPADLFWKY_ 0 0 0 nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83 nc|ENSG00000123901|Q9NYM4-2|GPR83 nc|ENSG00000123901|Q9NYM4-2|GPR83 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.8478393554688 2 706.847896 1411.68124 0.53834 0.00038052 -2.4467 -0.0017294 -1.9083 -0.0013489 706.8472792234483 46.954 0.25481 46.618 46.483 46.737 -0.33664 27 12 3 0 0 0 0.59689 1 25138 25138 11.495 4.393 1 5581000 13046 3734 8945 9124 15251 15251 -0.008134741169214976 FPEPADLFWKY 11 Unmodified _FPEPADLFWKY_ 0 0 0 nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83 nc|ENSG00000123901|Q9NYM4-2|GPR83 nc|ENSG00000123901|Q9NYM4-2|GPR83 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 706.847896 1411.68124 1.4597 0.0010318 -1.1984 -0.00084707 0.26136 0.00018474 706.847468127646 46.679 0.20438 46.645 46.529 46.733 -0.033417 0.013898 0.00068825 NaN 11.495 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2756800 13047 3734 8945 9124 -0.008134741169214976 FPEPALQPDP 10 Unmodified _FPEPALQPDP_ 0 0 0 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3156127929688 2 555.776939 1109.53933 0.32545 0.00018088 -0.92923 -0.00051644 -0.60378 -0.00033556 556.2777402392737 66.237 0.22797 65.753 65.63 65.858 -0.48323 18 13 2 0 0 0 0.22667 1 36105 36105 15.847 5.0233 1 5890900 13048 7750 8946 9125 15252 15252 -0.01106267139243755 FPEPEHSSF 9 Unmodified _FPEPEHSSF_ 0 0 0 nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4 nc|ENSG00000162542|Q5TGY1-2|TMCO4 nc|ENSG00000162542|Q5TGY1-2|TMCO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7366333007812 2 538.737814 1075.46108 -0.10588 -5.704E-05 -0.42361 -0.00022822 -0.52949 -0.00028526 538.7374334345135 40.657 0.49684 40.657 40.333 40.83 0 69 28 3 0 0 0 0.0083938 3 21938 21711;21822;21938 108 59.651 1 13786000 13049 6871 8947 9126 15253;15254;15255 15255 -0.0736369972448756 FPEPEHSSF 9 Unmodified _FPEPEHSSF_ 0 0 0 nc|ENSG00000162542|Q5TGY1-2|TMCO4;ENSG00000162542|ENST00000294543|TMCO4 nc|ENSG00000162542|Q5TGY1-2|TMCO4 nc|ENSG00000162542|Q5TGY1-2|TMCO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7374267578125 2 538.737814 1075.46108 0.38903 0.00020958 0.40523 0.00021831 0.79426 0.0004279 538.7381941157134 46.365 0.5787 41.284 40.843 41.422 -5.0805 86 40 3 0 0 0 0.0041763 2 28589 28455;28589 120.45 68.182 1 34876000 13050 6871 8947 9126 15256;15257 15257 -0.0736369972448756 FPEPLIIPVL 10 Unmodified _FPEPLIIPVL_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENST00000553853.1_1_14:35297835-35331506:-|nuORF ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3515625 2 569.349543 1136.68453 0.99158 0.00056455 2.1507 0.0012245 3.1423 0.0017891 569.350753042624 102.14 0.12981 95.963 95.898 96.027 -6.1757 15 5 4 0 0 0 0.16524 1 68557 68557 37.974 16.227 1 20562000 13051 10112 8948 9127 15258 15258 0.12165820727750543 FPEPLIIPVLY 11 Unmodified _FPEPLIIPVLY_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENST00000553853.1_1_14:35297835-35331506:-|nuORF ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.880859375 2 650.881207 1299.74786 0.82782 0.00053881 1.3151 0.00085598 2.1429 0.0013948 650.8819716302299 102.13 0.15049 95.957 95.877 96.027 -6.1757 17 6 4 0 0 0 0.025642 1 68543 68543 56.177 38.031 1 33741000 13052 10112 8949 9128 15259 15259 0.10997761444991738 FPEPTIDWYF 10 Unmodified _FPEPTIDWYF_ 0 0 0 nc|ENSG00000157404|P10721-2|KIT;ENSG00000157404|ENST00000288135|KIT nc|ENSG00000157404|P10721-2|KIT nc|ENSG00000157404|P10721-2|KIT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.8727722167969 3 438.87289 1313.59684 NaN NaN NaN NaN NaN NaN NaN 77.295 1 76.812 76.312 77.312 -0.4826 0 0 0 0.98914 1 42315 42315 0.77653 0.27058 1 13053 6516 8950 9129 15260 15260 -0.047414249336725334 FPEQIAEKL 9 Unmodified _FPEQIAEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.796142578125 2 537.795132 1073.57571 0.13691 7.3631E-05 2.3827 0.0012814 2.5197 0.0013551 537.796642967289 52.421 0.73813 52.421 52.06 52.798 0 61 32 2 0 0 0 0.0085526 3 28863 28863;28967;29084 107.56 44.991 1 27441000 13054 3206 8951 9130 15261;15262;15263 15261 0.04186609757448423 FPEQIAEKL 9 Unmodified _FPEQIAEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7987670898438 2 537.795132 1073.57571 1.311 0.00070502 2.6566 0.0014287 3.9676 0.0021337 537.797134375331 58.604 0.88535 52.529 52.145 53.03 -6.0745 124 48 3 0 0 0 0.0071813 3 37362 37362;37491;37745 111.31 36.689 1 148130000 13055 3206 8951 9130 15264;15265;15266 15264 0.04186609757448423 FPEQNVPEAL 10 Unmodified _FPEQNVPEAL_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2882690429688 2 572.287671 1142.56079 0.70369 0.00040271 0.21332 0.00012208 0.91701 0.00052479 572.2879931613787 57.246 0.69893 57.246 56.855 57.554 0 64 30 3 0 0 0 0.14688 3 31862 31751;31862;31963 40.239 19.825 1 2312800 13056 2781 8952 9131 15267;15268;15269 15268 -0.004788821105194074 FPEQTSCAF 9 Carbamidomethyl (C) _FPEQTSC(Carbamidomethyl (C))AF_ FPEQTSC(1)AF FPEQTSC(46)AF 0 1 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MSMS AL20221201_MKP_PDAC_01 4 543.7322387695312 2 543.731674 1085.4488 NaN NaN NaN NaN NaN NaN NaN 56.119 1 50.143 49.643 50.643 -5.9769 0 0 0 0.091025 1 35782 35782 45.7 18.071 1 13057 10826 8953 9132 15270 15270 955 -0.09051059459170574 FPEQTSCAF 9 Carbamidomethyl (C) _FPEQTSC(Carbamidomethyl (C))AF_ FPEQTSC(1)AF FPEQTSC(52)AF 0 1 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MSMS AL20221201_MKP_PDAC_01 4 543.7310791015625 2 543.731674 1085.4488 NaN NaN NaN NaN NaN NaN NaN 56.3 1 50.324 49.824 50.824 -5.9769 0 0 0 0.068038 1 35914 35914 51.63 22.548 1 13058 10826 8953 9132 15271 15271 955 -0.09051059459170574 FPERKEREM 9 Unmodified _FPERKEREM_ 0 0 0 ENSG00000099795|ENST00000215565|NDUFB7 ENSG00000099795|ENST00000215565|NDUFB7 ENSG00000099795|ENST00000215565|NDUFB7 MSMS AL20221201_MKP_PDAC_01 4 408.2073974609375 3 407.873007 1220.59719 NaN NaN NaN NaN NaN NaN NaN 16.486 1 13.929 13.429 14.429 -2.557 0 0 0 0.65645 1 8543 8543 7.4771 1.6089 1 13059 1706 8954 9133 15272 15272 -0.004283284854636804 FPESCNHVF 9 Carbamidomethyl (C) _FPESC(Carbamidomethyl (C))NHVF_ FPESC(1)NHVF FPESC(64)NHVF 0 1 0 ENSG00000139218|ENST00000369367|SCAF11;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;ENST00000547018.5_1_12:46345524-46385838:-|nuORF ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7454223632812 2 568.745116 1135.47568 1.0428 0.00059307 -0.21894 -0.00012452 0.82383 0.00046855 568.7451292521057 48.471 0.92818 43.099 42.636 43.564 -5.3718 99 55 3 0 0 0 0.01958 3 30134 29945;30134;30276 63.961 38.465 1 29068000 13060 5139 8955 9134 15273;15274;15275 15274 526 -0.08663950847994784 FPESERPEM 9 Oxidation (M) _FPESERPEM(Oxidation (M))_ FPESERPEM(1) FPESERPEM(46) 0 0 1 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MSMS AL20221201_MKP_PDAC_01 4 569.2471923828125 2 569.247689 1136.48082 NaN NaN NaN NaN NaN NaN NaN 25.85 1 22.899 22.399 23.399 -2.9511 0 0 0 0.091025 1 14184 14184 45.7 20.3 1 13061 8873 8956 9135 15276 15276 1496 -0.08195691776040803 FPESERPEM 9 Oxidation (M) _FPESERPEM(Oxidation (M))_ FPESERPEM(1) FPESERPEM(73) 0 0 1 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MSMS AL20221201_MKP_PDAC_01 4 569.2474975585938 2 569.247689 1136.48082 NaN NaN NaN NaN NaN NaN NaN 26.069 1 23.118 22.618 23.618 -2.9511 0 0 0 0.024473 1 14325 14325 72.968 43.886 1 13062 8873 8956 9135 15277 15277 1496 -0.08195691776040803 FPESERPEM 9 Unmodified _FPESERPEM_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MSMS AL20221201_MKP_PDAC_01 4 561.24853515625 2 561.250231 1120.48591 NaN NaN NaN NaN NaN NaN NaN 38.289 1 33.92 33.42 34.42 -4.3689 0 0 0 0.10661 1 22565 22565 41.956 15.072 1 13063 8873 8956 9136 15278 15278 -0.06951387913409235 FPESLVIQAY 10 Unmodified _FPESLVIQAY_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A nc|ENSG00000179262|P54725-2|RAD23A nc|ENSG00000179262|P54725-2|RAD23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8090209960938 2 583.808239 1165.60193 -0.57194 -0.0003339 0.58667 0.0003425 0.014729 8.5988E-06 583.8084236393966 78.272 0.61546 77.786 77.524 78.139 -0.48596 66 29 3 0 0 0 0.04925 2 42850 42850;42946 58.679 29.597 1 3664000 13064 8821 8957 9137 15279;15280 15279 0.02574878928930957 FPESLVIQAY 10 Unmodified _FPESLVIQAY_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A nc|ENSG00000179262|P54725-2|RAD23A nc|ENSG00000179262|P54725-2|RAD23A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3096313476562 2 583.808239 1165.60193 1.2089 0.00070575 -0.10863 -6.3418E-05 1.1002 0.00064233 583.8084108103884 88.382 0.55663 82.206 81.85 82.407 -6.1757 51 30 2 0 0 0 0.13391 1 58321 58321 41.84 7.4379 1 11763000 13065 8821 8957 9137 15281 15281 0.02574878928930957 FPESSAIEAL 10 Unmodified _FPESSAIEAL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.26904296875 2 532.268947 1062.52334 0.51252 0.0002728 0.020591 1.096E-05 0.53311 0.00028376 532.2688515250682 66.595 1.0821 66.595 66.05 67.132 0 146 49 4 0 0 0 0.013474 4 37069 37069;37173;37274;37377 81.613 54.729 1 21488000 13066 6628;16309;16310 8958 9138 15282;15283;15284;15285 15282 -0.005419733761300449 FPESSAIEAL 10 Unmodified _FPESSAIEAL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2681274414062 2 532.268947 1062.52334 0.30259 0.00016106 -0.7567 -0.00040277 -0.45412 -0.00024171 532.2686160610479 67.108 0.63445 66.625 66.254 66.888 -0.48308 52 29 2 0 0 0 0.33553 1 36685 36685 25.399 6.1423 1 2419300 13067 6628;16309;16310 8958 9138 15286 15286 -0.005419733761300449 FPESSAIEAL 10 Unmodified _FPESSAIEAL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2685546875 2 532.268947 1062.52334 0.86391 0.00045983 -0.19146 -0.00010191 0.67245 0.00035792 532.2688627880048 73.923 1.0469 67.748 67.369 68.416 -6.1757 108 53 3 0 0 0 0.024981 4 48252 48252;48372;48495;48622 71.134 45.734 1 34061000 13068 6628;16309;16310 8958 9138 15287;15288;15289;15290 15287 -0.005419733761300449 FPETKVKVL 9 Unmodified _FPETKVKVL_ 0 0 0 ENST00000434399.5_1_7:30601325-30601478:-|nuORF ENST00000434399.5_1_7:30601325-30601478:-|nuORF ENST00000434399.5_1_7:30601325-30601478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2185668945312 3 354.21822 1059.63283 0.36859 0.00013056 0.42507 0.00015057 0.79365 0.00028113 354.2184070761058 50.948 0.24612 50.534 50.415 50.661 -0.41351 27 11 3 0 0 0 0.43463 1 27450 27450 7.1017 1.8048 1 2630300 13069 13298 8959 9139 15291 15291 0.10540077033851958 FPETKVKVL 9 Unmodified _FPETKVKVL_ 0 0 0 ENST00000434399.5_1_7:30601325-30601478:-|nuORF ENST00000434399.5_1_7:30601325-30601478:-|nuORF ENST00000434399.5_1_7:30601325-30601478:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 354.21822 1059.63283 0.78553 0.00027825 -0.33616 -0.00011908 0.44936 0.00015917 354.2180638456887 50.586 0.19993 50.532 50.428 50.628 -0.053871 -0.0012481 -0.00053512 NaN 7.1017 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 977540 13070 13298 8959 9139 0.10540077033851958 FPETPEKWS 9 Unmodified _FPETPEKWS_ 0 0 0 ENSG00000187105|ENST00000553558|HEATR4 ENSG00000187105|ENST00000553558|HEATR4 ENSG00000187105|ENST00000553558|HEATR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1793823242188 3 374.181835 1119.52368 NaN NaN NaN NaN NaN NaN NaN 25.429 1 25.429 24.929 25.929 0 0 0 0 0.83049 1 13036 13036 2.2828 1.3205 1 13071 9539 8960 9140 15292 15292 -0.0313055365627406 FPETTSPHEY 10 Unmodified _FPETTSPHEY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2652587890625 2 604.266936 1206.51932 -1.3259 -0.0008012 0.62126 0.00037541 -0.70464 -0.00042579 604.2670913403618 32.399 0.92744 32.399 31.961 32.889 0 86 50 3 0 0 0 5.0281E-05 2 16839 16736;16839 118.89 99.638 1 5933800 13072 6146 8961 9141 15293;15294 15294 -0.07568062869859205 FPETTSPHEY 10 Unmodified _FPETTSPHEY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2655639648438 2 604.266936 1206.51932 NaN NaN NaN NaN NaN NaN NaN 32.594 1 32.594 32.094 33.094 0 0 0 0 0.018389 1 17043 17043 78.728 51.844 1 13073 6146 8961 9141 15295 15295 -0.07568062869859205 FPETTSPHEY 10 Unmodified _FPETTSPHEY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2639770507812 2 604.266936 1206.51932 NaN NaN NaN NaN NaN NaN NaN 32.787 1 32.787 32.287 33.287 0 0 0 0 0.21708 1 17154 17154 41.84 31.766 1 13074 6146 8961 9141 15296 15296 -0.07568062869859205 FPETTSPHEY 10 Unmodified _FPETTSPHEY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7689819335938 2 604.266936 1206.51932 0.66775 0.0004035 -0.037362 -2.2576E-05 0.63039 0.00038092 604.2660923213713 37.211 0.82532 32.928 32.388 33.213 -4.2835 108 49 3 0 0 0 7.8533E-07 4 21770 21508;21639;21770;21910 131.27 105.03 1 13186000 13075 6146 8961 9141 15297;15298;15299;15300 15299 -0.07568062869859205 FPETWLAIQPS 11 Unmodified _FPETWLAIQPS_ 0 0 0 ENSG00000158553|ENST00000444565|POM121L2 ENSG00000158553|ENST00000444565|POM121L2 ENSG00000158553|ENST00000444565|POM121L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2240295410156 3 430.223923 1287.64994 0.14833 6.3816E-05 0.61572 0.0002649 0.76405 0.00032871 430.2241618670708 84.556 0.39773 84.556 84.409 84.807 0 33 18 2 0 0 0 0.68427 1 46876 46876 2.6312 0 1 3664400 13076 6595 8962 9142 15301 15301 0.017619528490058656 FPEWCRREES 10 Unmodified _FPEWCRREES_ 0 0 0 REV__ENST00000353047.10_1_8:11702126-11702228:-|nuORF REV__ENST00000353047.10_1_8:11702126-11702228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 446.8675537109375 3 446.868033 1337.58227 0.41237 0.00018427 -0.3933 -0.00017575 0.019067 8.5206E-06 446.86789731705824 27.305 0.23074 27.259 27.141 27.371 -0.046408 22 10 3 0 0 0 0.52888 1 14064 14064 8.9762 0 1 13520000 + 13077 25788 8963 9143 15302 15302 -0.07301820353450239 FPEYELPEL 9 Unmodified _FPEYELPEL_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MSMS AL20221201_MKP_PDAC_01 4 568.7579956054688 2 568.779148 1135.54374 NaN NaN NaN NaN NaN NaN NaN 95.508 1 89.332 88.832 89.832 -6.1757 0 0 0 0.50124 1 63261 63261 15.847 3.3156 1 13078 7274 8964 9144 15303 15303 -0.018608027163509178 FPEYTGANKY 10 Unmodified _FPEYTGANKY_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2794189453125 2 595.279846 1188.54514 0.022935 1.3653E-05 -2.0513 -0.0012211 -2.0284 -0.0012075 595.2779663091666 37.58 0.35181 37.58 37.475 37.826 0 30 17 2 0 0 0 0.038363 2 19989 19989;20091 63.961 31.655 1 2242100 13079 16131 8965 9145 15304;15305 15304 -0.04159168627575127 FPEYTGANKY 10 Unmodified _FPEYTGANKY_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7825927734375 2 595.279846 1188.54514 0.67591 0.00040236 -0.28372 -0.0001689 0.39219 0.00023346 595.2795649974843 42.761 0.42072 38.076 37.869 38.29 -4.6846 47 26 2 0 0 0 5.9542E-11 2 25906 25772;25906 160.69 108.42 1 16349000 13080 16131 8965 9145 15306;15307 15307 -0.04159168627575127 FPEYTHQLF 9 Unmodified _FPEYTHQLF_ 0 0 0 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.285400390625 2 591.284931 1180.55531 NaN NaN NaN NaN NaN NaN NaN 61.899 1 61.411 60.911 61.911 -0.48764 0 0 0 0.074615 1 33716 33716 49.933 25.912 1 13081 4087 8966 9146 15308 15308 -0.02774560902344092 FPEYTHQLF 9 Unmodified _FPEYTHQLF_ 0 0 0 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2854614257812 2 591.284931 1180.55531 NaN NaN NaN NaN NaN NaN NaN 62.1 1 61.612 61.112 62.112 -0.48764 0 0 0 0.13831 1 33829 33829 38.176 17.722 1 13082 4087 8966 9146 15309 15309 -0.02774560902344092 FPEYTQPMI 9 Unmodified _FPEYTQPMI_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;nc|ENSG00000141556|Q9BTW9-5|TBCD;nc|ENSG00000141556|Q9BTW9-3|TBCD;ENST00000571796.5_1_17:80853801-80866280:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7694091796875 2 563.267893 1124.52123 -0.011083 -6.2426E-06 0.25215 0.00014203 0.24107 0.00013578 563.2679382668588 71.479 0.28159 71.479 71.363 71.645 0 27 12 3 0 0 0 0.37804 1 39786 39786 13.508 0.97634 1 1137800 13083 5350 8967 9147 15310 15310 -0.03604725385616803 FPEYYHYP 8 Unmodified _FPEYYHYP_ 0 0 0 REV__ENSG00000117069|ENST00000477717|ST6GALNAC5 REV__ENSG00000117069|ENST00000477717|ST6GALNAC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2992553710938 2 558.245275 1114.476 0.45761 0.00025546 -0.36149 -0.0002018 0.096121 5.3659E-05 558.2453149426868 76.595 0.20235 76.645 76.52 76.722 0.05011 17 8 3 0 0 0 8.7369 1 42281 42281 10.183 0 1 2342600 + 13084 19083 8968 9148 15311 15311 -0.07666207856482288 FPFARPLPF 9 Unmodified _FPFARPLPF_ 0 0 0 REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF REV__ENST00000497152.6_1_15:91479252-91479489:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5395202636719 3 364.539405 1090.59639 1.7169 0.00062589 -0.59741 -0.00021778 1.1195 0.00040811 364.5389926409932 19.671 0.26508 17.015 16.898 17.163 -2.6564 24 17 2 0 0 0 0.47846 1 10425 10425 8.7454 0 1 3053500 + 13085 27974 8969 9149 15312 15312 0.054712449277758424 FPFAVANQL 9 Unmodified _FPFAVANQL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7710266113281 2 503.77146 1005.52837 0.31848 0.00016044 1.8901 0.00095217 2.2086 0.0011126 503.77180880607654 81.303 0.33368 80.81 80.731 81.065 -0.49247 39 14 3 0 0 0 0.10925 1 44527 44527 32.117 13.982 1 1262700 13086 1432 8970 9150 15313 15313 0.025823752771316322 FPFAVANQL 9 Unmodified _FPFAVANQL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1;ENST00000461493.1_1_7:6089476-6098783:-|nuORF ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7707214355469 2 503.77146 1005.52837 0.63891 0.00032186 -0.67144 -0.00033825 -0.032533 -1.6389E-05 503.77118740867326 80.731 0.47623 80.788 80.586 81.062 0.057587 49 18 3 0 0 0 0.027803 2 44585 44585;44688 56.541 28.368 1 11359000 13087 1432 8970 9150 15314;15315 15314 0.025823752771316322 FPFCREPSY 9 Carbamidomethyl (C) _FPFC(Carbamidomethyl (C))REPSY_ FPFC(1)REPSY FPFC(62)REPSY 0 1 0 ENSG00000143702|ENST00000366542|CEP170;ENST00000502249.6_1_4:119401524-119435218:+|nuORF;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170 ENSG00000143702|ENST00000366542|CEP170 ENSG00000143702|ENST00000366542|CEP170 MSMS AL20221201_MKP_PDAC_01 4 601.7689819335938 2 601.768591 1201.52263 NaN NaN NaN NaN NaN NaN NaN 54.843 1 48.978 48.478 49.478 -5.8653 0 0 0 0.041018 1 34838 34838 61.602 33.973 1 13088 5544 8971 9151 15316 15316 566 -0.07007091296827639 FPFCVHVEEC 10 Unmodified _FPFCVHVEEC_ 0 0 0 REV__ENST00000440698.1_1_2:51279567-51605310:+|nuORF REV__ENST00000440698.1_1_2:51279567-51605310:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2570190429688 2 605.257002 1208.49945 -0.30044 -0.00018184 -1.5168 -0.00091805 -1.8172 -0.0010999 605.2561425321885 48.971 0.98755 48.971 48.618 49.606 0 67 46 2 0 0 0 0.31022 3 26839 26839;26959;27082 26.884 7.6267 1 3344000 + 13089 27080 8972 9152 15317;15318;15319 15317 -0.09645853405800153 FPFDAEQIF 9 Unmodified _FPFDAEQIF_ 0 0 0 REV__ENSG00000138079|ENST00000260649|SLC3A1 REV__ENSG00000138079|ENST00000260649|SLC3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2669067382812 2 557.266207 1112.51786 1.0323 0.00057527 -0.38629 -0.00021527 0.646 0.00036 557.2659394148847 81.017 0.757 80.525 79.929 80.686 -0.49247 62 35 2 0 0 0 0.5029 1 44187 44187 7.2892 0.56607 1 2461600 + 13090 20299 8973 9153 15320 15320 -0.0338965216797078 FPFDPERRV 9 Unmodified _FPFDPERRV_ 0 0 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2052001953125 3 388.204974 1161.59309 1.5063 0.00058474 0.87991 0.00034159 2.3862 0.00092633 388.2054461540094 50.257 0.32564 44.718 44.546 44.872 -5.5391 38 20 2 0 0 0 0.12424 1 31454 31454 28.495 12.345 1 24922000 13091 2573 8974 9154 15321 15321 0.01875950083126554 FPFDPERRVR 10 Unmodified _FPFDPERRVR_ 0 0 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2388916015625 3 440.238678 1317.6942 0.084916 3.7383E-05 0.39944 0.00017585 0.48436 0.00021323 440.2387992595693 36.134 0.28658 36.159 36.012 36.298 0.024967 31 12 3 0 0 0 0.32533 1 19149 19149 25.997 11.779 1 6674700 13092 2573 8975 9155 15322 15322 0.04806401785822345 FPFDVAVKF 9 Unmodified _FPFDVAVKF_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2886962890625 2 535.289485 1068.56442 -0.19313 -0.00010338 0.15637 8.3702E-05 -0.036766 -1.968E-05 535.2894708211826 84.989 0.47152 85.052 84.838 85.31 0.063171 39 19 3 0 0 0 0.00065891 2 47020 47020;47130 142.08 89.811 1 27425000 13093 7776;16369 8976 9156 15323;15324 15323 0.032878324539979076 FPFDVAVKF 9 Unmodified _FPFDVAVKF_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2892456054688 2 535.289485 1068.56442 1.4622 0.00078269 -0.31406 -0.00016812 1.1481 0.00061457 535.2892621004938 98.256 0.34348 92.08 91.847 92.19 -6.1757 64 22 4 0 0 0 0.017075 2 65059 65059;65190 66.457 47.2 1 157570000 13094 7776;16369 8976 9156 15325;15326 15325 0.032878324539979076 FPFEAEAY 8 Unmodified _FPFEAEAY_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.4313354492188 1 973.430175 972.422899 0.21076 0.00020516 1.0877 0.0010588 1.2985 0.001264 973.4314853162273 66.011 0.43947 66.011 65.864 66.304 0 24 21 2 0 0 0 0.67481 1 36784 36784 19.439 5.5329 1 846800 13095 8479 8977 9157 15327 15327 -0.06441585639151981 FPFEKEGPHY 10 Unmodified _FPFEKEGPHY_ 0 0 0 ENSG00000185608|ENST00000333130|MRPL40 ENSG00000185608|ENST00000333130|MRPL40 ENSG00000185608|ENST00000333130|MRPL40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.5328063964844 3 417.532868 1249.57677 0.099731 4.1641E-05 0.2007 8.3798E-05 0.30043 0.00012544 417.53282001391676 41.239 0.36883 40.936 40.678 41.047 -0.30304 38 17 3 0 0 0 0.1028 1 21853 21853 46.022 37.578 1 3155900 13096 9387 8978 9158 15328 15328 -0.038031758735996846 FPFEKGSVQY 10 Unmodified _FPFEKGSVQY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2972412109375 2 601.298039 1200.58152 0.089227 5.3652E-05 -0.52103 -0.00031329 -0.4318 -0.00025964 601.2976220249046 51.682 1.0153 51.248 50.856 51.871 -0.43367 193 52 5 0 0 0 0.0032515 5 27743 27743;27852;27965;28079;28183 103.82 46.102 1 136290000 13097 233 8979 9159 15329;15330;15331;15332;15333 15329 -0.010742917308562028 FPFEKGSVQY 10 Unmodified _FPFEKGSVQY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.2981567382812 2 601.298039 1200.58152 -0.2755 -0.00016566 0.073604 4.4258E-05 -0.20189 -0.0001214 601.2980886569188 51.438 0.91869 51.384 50.921 51.84 -0.053871 149 45 4 0 0 0 0.01173 4 27747 27648;27747;27861;27963 84.522 46.347 1 22637000 13098 233 8979 9159 15334;15335;15336;15337 15335 -0.010742917308562028 FPFEKGSVQY 10 Unmodified _FPFEKGSVQY_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2984008789062 2 601.298039 1200.58152 0.29612 0.00017806 0.10645 6.4006E-05 0.40257 0.00024206 601.298130651843 57.446 0.99864 51.419 50.924 51.923 -6.0275 214 56 6 0 0 0 0.0065755 6 36590 36454;36590;36705;36826;36958;37100 93.938 55.763 1 1114100000 13099 233 8979 9159 15338;15339;15340;15341;15342;15343 15339 -0.010742917308562028 FPFEQQSEF 9 Unmodified _FPFEQQSEF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.759521484375 2 579.758746 1157.50294 0.38891 0.00022547 1.328 0.00076992 1.7169 0.0009954 579.759365538865 68.375 0.96325 68.375 67.875 68.838 0 115 45 4 0 0 0 0.12424 3 38122 38022;38122;38225 30.637 16.055 1 2196900 13100 6399 8980 9160 15344;15345;15346 15345 -0.06951144035929246 FPFEQQSEF 9 Unmodified _FPFEQQSEF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7608032226562 2 579.758746 1157.50294 NaN NaN NaN NaN NaN NaN NaN 68.809 1 68.328 67.828 68.828 -0.48071 0 0 0 0.14 1 37611 37611 37.974 19.828 1 13101 6399 8980 9160 15347 15347 -0.06951144035929246 FPFEQQSEF 9 Unmodified _FPFEQQSEF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7590942382812 2 579.758746 1157.50294 NaN NaN NaN NaN NaN NaN NaN 69.032 1 68.552 68.052 69.052 -0.48071 0 0 0 0.39043 1 37736 37736 20.454 3.3671 1 13102 6399 8980 9160 15348 15348 -0.06951144035929246 FPFERLYDL 9 Unmodified _FPFERLYDL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3099365234375 2 600.308406 1198.60226 0.89005 0.00053431 0.76957 0.00046198 1.6596 0.00099629 600.3089487147937 81.101 0.42612 81.161 80.917 81.343 0.059929 38 16 3 0 0 0 0.070983 2 44809 44809;44913 42.312 16.044 1 6007800 13103 5575 8981 9161 15349;15350 15349 0.010902986488190436 FPFERLYDL 9 Unmodified _FPFERLYDL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8098754882812 2 600.308406 1198.60226 0.67213 0.00040348 -0.51864 -0.00031134 0.15349 9.2139E-05 600.3074387186498 98.072 0.21429 91.896 91.8 92.014 -6.1757 26 13 3 0 0 0 0.0071813 1 64990 64990 121.53 77.676 1 36142000 13104 5575 8981 9161 15351 15351 0.010902986488190436 FPFERLYDL 9 Unmodified _FPFERLYDL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 600.308406 1198.60226 0.74483 0.00044713 0.79601 0.00047785 1.5408 0.00092498 600.3086747003804 81.693 0.3481 81.198 80.994 81.342 -0.4952 0.018326 2.2161E-05 NaN 42.312 37 13 5 NaN NaN NaN NaN 0 NaN NaN 0 1552500 13105 5575 8981 9161 0.010902986488190436 FPFESGKPF 9 Unmodified _FPFESGKPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2625732421875 2 528.263468 1054.51238 0.51027 0.00026956 -0.80299 -0.00042419 -0.29271 -0.00015463 528.2631605406101 62.744 0.51297 62.258 61.852 62.365 -0.48617 41 24 2 0 0 0 0.07087 2 34183 34066;34183 39.95 9.5521 1 3947100 13106 4363 8982 9162 15352;15353 15353 -0.012693309597580082 FPFESGKPF 9 Unmodified _FPFESGKPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2639770507812 2 528.263468 1054.51238 NaN NaN NaN NaN NaN NaN NaN 62.953 1 62.467 61.967 62.967 -0.48617 0 0 0 0.50124 1 34326 34326 15.847 2.3393 1 13107 4363 8982 9162 15354 15354 -0.012693309597580082 FPFESGKPF 9 Unmodified _FPFESGKPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2632446289062 2 528.263468 1054.51238 0.27584 0.00014572 -0.32089 -0.00016952 -0.045057 -2.3802E-05 528.263213520681 62.269 0.87196 62.236 61.888 62.76 -0.032787 86 45 2 0 0 0 0.013609 2 33998 33887;33998 70.332 26.474 1 15103000 13108 4363 8982 9162 15355;15356 15356 -0.012693309597580082 FPFESGKPF 9 Unmodified _FPFESGKPF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2650146484375 2 528.263468 1054.51238 0.64015 0.00033817 0.76627 0.00040479 1.4064 0.00074296 528.263654341725 68.127 0.54617 61.952 61.583 62.129 -6.1757 64 31 3 0 0 0 0.015688 1 44296 44296 67.838 29.864 1 31289000 13109 4363 8982 9162 15357 15357 -0.012693309597580082 FPFFDIAHY 9 Unmodified _FPFFDIAHY_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B;ENST00000434214.1_2_9:108456911-108465004:+|nuORF ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2799072265625 2 578.776742 1155.53893 0.50477 0.00029215 0.031662 1.8325E-05 0.53643 0.00031047 578.7764561361781 89.188 0.36748 88.684 88.473 88.841 -0.50423 26 15 2 0 0 0 0.2001 1 48739 48739 23.148 10.106 1 1037300 13110 1647 8983 9163 15358 15358 -0.03261642068423498 FPFFDIAHY 9 Unmodified _FPFFDIAHY_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B;ENST00000434214.1_2_9:108456911-108465004:+|nuORF ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.779296875 2 578.776742 1155.53893 NaN NaN NaN NaN NaN NaN NaN 89.348 1 88.847 88.347 89.347 -0.50171 0 0 0 0.82396 1 48852 48852 4.756 0.81161 1 13111 1647 8983 9163 15359 15359 -0.03261642068423498 FPFFDIAHY 9 Unmodified _FPFFDIAHY_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B;ENST00000434214.1_2_9:108456911-108465004:+|nuORF ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7764892578125 2 578.776742 1155.53893 0.45024 0.00026059 0.27863 0.00016126 0.72886 0.00042185 578.7768784022326 88.499 0.35287 88.553 88.328 88.681 0.053352 33 14 3 0 0 0 0.0058506 2 49293 49187;49293 114.94 57.472 1 31792000 13112 1647 8983 9163 15360;15361 15361 -0.03261642068423498 FPFFDIAHY 9 Unmodified _FPFFDIAHY_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B;ENST00000434214.1_2_9:108456911-108465004:+|nuORF ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7764282226562 2 578.776742 1155.53893 0.6546 0.00037887 -0.45469 -0.00026317 0.19991 0.0001157 578.7764711595644 99.123 0.16729 92.948 92.841 93.009 -6.1757 17 9 2 0 0 0 0.0058506 1 65907 65907 114.94 57.472 1 276820000 13113 1647 8983 9163 15362 15362 -0.03261642068423498 FPFFFYCLF 9 Unmodified _FPFFFYCLF_ 0 0 0 REV__ENSG00000164197|ENST00000389100|RNF180 REV__ENSG00000164197|ENST00000389100|RNF180 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.7882690429688 2 615.788264 1229.56198 0.58117 0.00035788 -0.99469 -0.00061252 -0.41352 -0.00025464 616.2893233456753 90.426 0.38145 89.931 89.758 90.139 -0.49458 41 17 3 0 0 0 0.46577 1 49395 49395 9.3474 2.0582 1 2328200 + 13114 21891 8984 9164 15363 15363 -0.043623392753261214 FPFFTFRVRHP 11 Unmodified _FPFFTFRVRHP_ 0 0 0 ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 725.8910522460938 2 725.890764 1449.76697 NaN NaN NaN NaN NaN NaN NaN 78.68 1 72.504 72.004 73.004 -6.1757 0 0 0 0.35958 1 51517 51517 29.841 4.8496 1 13115 14338 8985 9165 15364 15364 0.06008155579252161 FPFFTFRVRHP 11 Unmodified _FPFFTFRVRHP_ 0 0 0 ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 725.8890380859375 2 725.890764 1449.76697 NaN NaN NaN NaN NaN NaN NaN 78.876 1 72.7 72.2 73.2 -6.1757 0 0 0 0.45469 1 51661 51661 26.268 4.7312 1 13116 14338 8985 9165 15365 15365 0.06008155579252161 FPFFTFRVRHP 11 Unmodified _FPFFTFRVRHP_ 0 0 0 ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF ENST00000494718.5_1_X:51641614-51641740:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 725.888427734375 2 725.890764 1449.76697 NaN NaN NaN NaN NaN NaN NaN 79.061 1 72.885 72.385 73.385 -6.1757 0 0 0 0.61053 1 51792 51792 20.415 4.2654 1 13117 14338 8985 9165 15366 15366 0.06008155579252161 FPFGDPTKF 9 Unmodified _FPFGDPTKF_ 0 0 0 nc|ENSG00000107130|P62166-2|NCS1;ENSG00000107130|ENST00000372398|NCS1 nc|ENSG00000107130|P62166-2|NCS1 nc|ENSG00000107130|P62166-2|NCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2655029296875 2 528.263468 1054.51238 0.42472 0.00022437 0.42595 0.00022501 0.85067 0.00044938 528.2637614299249 68.11 0.82664 68.135 67.794 68.621 0.025146 110 40 3 0 0 0 0.013609 2 37308 37308;37447 70.332 41.845 1 7389700 13118 2475 8986 9166 15367;15368 15367 -0.012693309597580082 FPFGDPTKF 9 Unmodified _FPFGDPTKF_ 0 0 0 nc|ENSG00000107130|P62166-2|NCS1;ENSG00000107130|ENST00000372398|NCS1 nc|ENSG00000107130|P62166-2|NCS1 nc|ENSG00000107130|P62166-2|NCS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.264404296875 2 528.263468 1054.51238 0.80641 0.000426 0.26362 0.00013926 1.07 0.00056526 528.263288971647 75.876 0.92907 69.7 69.253 70.182 -6.1757 111 50 3 0 0 0 0.0081887 2 49597 49597;49746 93.166 57.122 1 22080000 13119 2475 8986 9166 15369;15370 15369 -0.012693309597580082 FPFGYVSNIHY 11 Unmodified _FPFGYVSNIHY_ 0 0 0 ENST00000481458.1_1_21:37771819-37785123:+|nuORF;ENSG00000159259|ENST00000314103|CHAF1B ENST00000481458.1_1_21:37771819-37785123:+|nuORF ENST00000481458.1_1_21:37771819-37785123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.3240356445312 2 672.324588 1342.63462 0.40043 0.00026922 -0.98735 -0.00066382 -0.58692 -0.0003946 672.3237972957693 73.037 0.46629 73.079 72.803 73.27 0.041725 55 22 3 0 0 0 7.4113E-15 2 40246 40144;40246 132.38 104.75 1 11128000 13120 6641 8987 9167 15371;15372 15372 -0.022989139481978782 FPFGYVSNIHY 11 Unmodified _FPFGYVSNIHY_ 0 0 0 ENST00000481458.1_1_21:37771819-37785123:+|nuORF;ENSG00000159259|ENST00000314103|CHAF1B ENST00000481458.1_1_21:37771819-37785123:+|nuORF ENST00000481458.1_1_21:37771819-37785123:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.825439453125 2 672.324588 1342.63462 0.80749 0.00054289 -0.071235 -4.7893E-05 0.73625 0.000495 672.3243459015339 85.954 0.77197 79.778 79.424 80.196 -6.1757 94 42 3 0 0 0 4.9562E-22 3 56755 56492;56621;56755 154.75 118.69 1 23658000 13121 6641 8987 9167 15373;15374;15375 15375 -0.022989139481978782 FPFHEVIQEF 10 Unmodified _FPFHEVIQEF_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.819580078125 2 646.819138 1291.62372 -0.49433 -0.00031974 0.33374 0.00021587 -0.16059 -0.00010387 646.8200024908664 77.135 0.28704 76.652 76.434 76.721 -0.4826 15 12 2 0 0 0 0.67033 1 42257 42257 6.2058 2.6093 1 333560 13122 8742 8988 9168 15376 15376 -0.010423163224913878 FPFHEVIQEF 10 Unmodified _FPFHEVIQEF_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8191528320312 2 646.819138 1291.62372 1.2216 0.00079015 -0.54363 -0.00035163 0.67796 0.00043852 646.8183469219938 95.926 0.24965 89.75 89.552 89.801 -6.1757 29 14 3 0 0 0 0.0575 1 63549 63549 56.177 34.64 1 13061000 13123 8742 8988 9168 15377 15377 -0.010423163224913878 FPFHFVDRL 9 Unmodified _FPFHFVDRL_ 0 0 0 ENST00000472220.1_1_2:105708813-105716216:+|nuORF;ENSG00000135972|ENST00000258455|MRPS9 ENST00000472220.1_1_2:105708813-105716216:+|nuORF ENST00000472220.1_1_2:105708813-105716216:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2101745605469 3 393.209948 1176.60801 0.16712 6.5713E-05 0.15327 6.0267E-05 0.32039 0.00012598 393.20992645845325 69.744 0.32773 69.775 69.592 69.92 0.030922 37 16 3 0 0 0 0.29507 1 38328 38328 17.049 11.646 1 4001300 13124 4769 8989 9169 15378 15378 0.026774419511411907 FPFHPYPLLTF 11 Unmodified _FPFHPYPLLTF_ 0 0 0 REV__ENST00000258341.4_1_1:183112029-183112179:+|nuORF REV__ENST00000258341.4_1_1:183112029-183112179:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.863037109375 2 689.863349 1377.71214 NaN NaN NaN NaN NaN NaN NaN 71.211 1 70.733 70.233 71.233 -0.47735 0 0 0 0.92234 1 38972 38972 6.2058 0.47393 1 + 13125 24938 8990 9170 15379 15379 0.03839723987971411 FPFHSAPAL 9 Unmodified _FPFHSAPAL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7571716308594 2 493.758352 985.502152 0.5616 0.0002773 -0.64563 -0.00031879 -0.08403 -4.149E-05 493.75790601321916 57.804 0.4715 57.314 57.126 57.598 -0.48974 38 22 2 0 0 0 0.045537 1 31396 31396 46.921 21.522 1 2444300 13126 1614 8991 9171 15380 15380 0.008821061056551116 FPFHSAPAL 9 Unmodified _FPFHSAPAL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7587585449219 2 493.758352 985.502152 0.98887 0.00048826 0.14774 7.2947E-05 1.1366 0.00056121 493.7583303725854 57.485 0.69763 57.419 57.098 57.795 -0.066036 88 34 4 0 0 0 0.0094915 3 31266 31161;31266;31374 81.864 45.737 1 21344000 13127 1614 8991 9171 15381;15382;15383 15382 0.008821061056551116 FPFIFSPCL 9 Carbamidomethyl (C) _FPFIFSPC(Carbamidomethyl (C))L_ FPFIFSPC(1)L FPFIFSPC(53)L 0 1 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.311279296875 2 564.283346 1126.55214 0.90848 0.00051264 1.4049 0.00079274 2.3133 0.0013054 564.2830982220988 101.69 0.17183 95.514 95.373 95.545 -6.1757 11 8 2 0 0 0 0.034897 1 68274 68274 52.693 12.244 1 18511000 13128 6784 8992 9172 15384 15384 670 -0.0060752728070383455 FPFKKLVNF 9 Unmodified _FPFKKLVNF_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.559326171875 3 380.558577 1138.6539 1.5163 0.00057704 -0.18523 -7.049E-05 1.3311 0.00050655 380.5586419421361 93.907 0.3918 87.731 87.555 87.947 -6.1757 38 22 3 0 0 0 0.14 1 62187 62187 29.082 20.336 1 11764000 13129 868 8993 9173 15385 15385 0.09012087133351088 FPFKQLERF 9 Unmodified _FPFKQLERF_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5575866699219 3 404.557236 1210.64988 0.60028 0.00024285 0.44773 0.00018113 1.048 0.00042398 404.5572763914806 57.952 0.23631 57.886 57.714 57.95 -0.066036 20 11 2 0 0 0 0.073961 1 31546 31546 39.213 17.623 1 1839800 13130 5274 8994 9174 15386 15386 0.052979976396500206 FPFLHSAAA 9 Unmodified _FPFLHSAAA_ 0 0 0 REV__nc|ENSG00000154767|Q01831-2|XPC REV__nc|ENSG00000154767|Q01831-2|XPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7500610351562 2 480.750527 959.486502 -0.30859 -0.00014835 0.33273 0.00015996 0.024144 1.1607E-05 480.75039103433664 18.912 0.18425 18.912 18.76 18.944 0 22 14 2 0 0 0 0.39863 1 9395 9395 12.532 2.4576 1 712790 + 13131 21246 8995 9175 15387 15387 0.00513819588604747 FPFLHSAAA 9 Unmodified _FPFLHSAAA_ 0 0 0 REV__nc|ENSG00000154767|Q01831-2|XPC REV__nc|ENSG00000154767|Q01831-2|XPC MSMS AL20221201_MKP_PDAC_01 4 480.751220703125 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 20.995 1 18.302 17.802 18.802 -2.693 0 0 0 0.33856 1 11210 11210 23.148 6.0355 1 + 13132 21246 8995 9175 15388 15388 0.00513819588604747 FPFLHSAAA 9 Unmodified _FPFLHSAAA_ 0 0 0 REV__nc|ENSG00000154767|Q01831-2|XPC REV__nc|ENSG00000154767|Q01831-2|XPC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 480.750527 959.486502 -0.30859 -0.00014835 0.33273 0.00015996 0.024144 1.1607E-05 480.75039103433664 18.912 0.18425 18.912 18.76 18.944 0 0 0 NaN 12.532 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 712790 + 13133 21246 8995 9175 0.00513819588604747 FPFLQQEEARL 11 Unmodified _FPFLQQEEARL_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 nc|ENSG00000110719|Q13488-2|TCIRG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.360595703125 2 689.361702 1376.70885 NaN NaN NaN NaN NaN NaN NaN 71.274 1 70.797 70.297 71.297 -0.47735 0 0 0 0.90364 1 39009 39009 7.1017 0.37856 1 13134 2736 8996 9176 15389 15389 0.035564291433274775 FPFLSGDNQHY 11 Unmodified _FPFLSGDNQHY_ 0 0 0 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.8006591796875 2 662.801477 1323.5884 0.5666 0.00037555 -1.4675 -0.00097266 -0.90089 -0.00059711 663.3026249624075 62.784 0.18029 62.298 62.185 62.365 -0.48617 12 8 2 0 0 0 0.010023 1 34221 34221 67.838 42.439 1 2764600 13135 603 8997 9177 15390 15390 -0.060449788502864976 FPFLVKLEF 9 Unmodified _FPFLVKLEF_ 0 0 0 ENST00000536649.5_1_19:14208073-14223129:-|nuORF;nc|ENSG00000072062|P17612-2|PRKACA;ENSG00000072062|ENST00000308677|PRKACA ENST00000536649.5_1_19:14208073-14223129:-|nuORF ENST00000536649.5_1_19:14208073-14223129:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.33251953125 2 570.328611 1138.64267 4.3416 0.0024762 1.3566 0.00077369 5.6982 0.0032499 570.3288204508705 99.169 0.28106 99.141 99.051 99.332 -0.028282 16 9 3 0 0 0 0.069655 1 55092 55092 43.858 11.553 1 2988500 13136 1069 8998 9178 15391 15391 0.07889265039239035 FPFNPDLHKVF 11 Unmodified _FPFNPDLHKVF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2403259277344 3 454.239796 1359.69756 0.95107 0.00043201 0.19992 9.0811E-05 1.151 0.00052282 454.23988595102156 68.805 0.42471 68.83 68.662 69.087 0.025146 71 19 5 0 0 0 0.0079293 2 37876 37768;37876 70.321 45.439 1 48350000 13137 8367 8999 9179 15392;15393 15393 0.03209651839824801 FPFNPDLHKVF 11 Unmodified _FPFNPDLHKVF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.8571166992188 2 680.856055 1359.69756 0.83165 0.00056623 0.61928 0.00042164 1.4509 0.00098788 680.8567261576399 68.832 0.2604 68.857 68.724 68.984 0.025146 20 11 2 0 0 0 0.14513 1 37821 37821 38.615 19.358 1 2944400 13138 8367 8999 9179 15394 15394 0.03209651839824801 FPFNPDLHKVF 11 Unmodified _FPFNPDLHKVF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2405395507812 3 454.239796 1359.69756 0.93974 0.00042687 0.3902 0.00017724 1.3299 0.00060411 454.2398469547465 90.134 0.70981 83.958 83.615 84.324 -6.1757 117 40 4 0 0 0 0.028917 4 59598 59344;59462;59598;59735 55.467 38.901 1 58315000 13139 8367 8999 9179 15395;15396;15397;15398 15397 0.03209651839824801 FPFNPLDFESF 11 Unmodified _FPFNPLDFESF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.3173828125 2 680.316428 1358.6183 -0.40112 -0.00027289 1.3174 0.00089624 0.91626 0.00062335 680.3172487309361 101.3 0.16608 101.26 101.16 101.33 -0.042152 20 5 5 0 0 0 0.00078105 1 56273 56273 85.642 56.56 1 51296000 13140 7214 9000 9180 15399 15399 -0.046660399049642365 FPFNPLDFESF 11 Unmodified _FPFNPLDFESF_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.3170776367188 2 680.316428 1358.6183 0.92603 0.00062999 -0.9942 -0.00067637 -0.068169 -4.6376E-05 680.3156932494724 101.74 0.16833 95.564 95.461 95.63 -6.1757 38 11 4 0 0 0 0.00078105 1 68271 68271 85.642 56.56 1 424860000 13141 7214 9000 9180 15400 15400 -0.046660399049642365 FPFNSFLSGF 10 Unmodified _FPFNSFLSGF_ 0 0 0 ENSG00000129562|ENST00000250498|DAD1 ENSG00000129562|ENST00000250498|DAD1 ENSG00000129562|ENST00000250498|DAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7830810546875 2 581.782025 1161.5495 0.77248 0.00044942 2.0253 0.0011783 2.7977 0.0016277 581.7829273077588 101.56 0.13133 95.384 95.33 95.461 -6.1757 11 6 2 0 0 0 0.44373 1 68174 68174 19.257 3.4098 1 15803000 13142 4150 9001 9181 15401 15401 -0.024816594140020243 FPFPDRPRTF 10 Unmodified _FPFPDRPRTF_ 0 0 0 ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENST00000522344.1_1_5:173317696-173337630:+|nuORF ENSG00000113742|ENST00000265085|CPEB4 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2235717773438 3 427.224257 1278.65094 -0.17904 -7.649E-05 0.078584 3.3573E-05 -0.10045 -4.2917E-05 427.2241848325552 53.519 0.45807 53.456 53.177 53.635 -0.063423 54 25 3 0 0 0 0.17714 2 28995 28995;29116 31.636 20.118 1 8154900 13143 2996 9002 9182 15402;15403 15402 0.022762120085417337 FPFPDRPRTF 10 Unmodified _FPFPDRPRTF_ 0 0 0 ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENST00000522344.1_1_5:173317696-173337630:+|nuORF ENSG00000113742|ENST00000265085|CPEB4 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5587158203125 3 427.224257 1278.65094 -0.20814 -8.8922E-05 0.87647 0.00037445 0.66834 0.00028553 427.55893769333517 53.76 0.22546 53.697 53.641 53.866 -0.063423 20 13 2 0 0 0 0.25982 1 29243 29243 20.871 12.926 1 4192700 13144 2996 9002 9182 15404 15404 0.022762120085417337 FPFPDRPRTF 10 Unmodified _FPFPDRPRTF_ 0 0 0 ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENST00000522344.1_1_5:173317696-173337630:+|nuORF ENSG00000113742|ENST00000265085|CPEB4 ENSG00000113742|ENST00000265085|CPEB4 MSMS AL20221201_MKP_PDAC_01 4 427.2251281738281 3 427.224257 1278.65094 NaN NaN NaN NaN NaN NaN NaN 74.921 1 68.745 68.245 69.245 -6.1757 0 0 0 0.68942 1 48987 48987 14.957 4.8066 1 13145 2996 9002 9182 15405 15405 0.022762120085417337 FPFPPFFLF 9 Unmodified _FPFPPFFLF_ 0 0 0 REV__ENST00000237654.8_1_4:77996857-77997100:-|nuORF REV__ENST00000237654.8_1_4:77996857-77997100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.8068237304688 2 579.804771 1157.59499 0.38042 0.00022057 2.6288 0.0015242 3.0092 0.0017448 579.8059052130088 65.07 0.23547 64.585 64.448 64.684 -0.48428 16 10 2 0 0 0 0.53666 1 35491 35491 5.2307 0 1 1593500 + 13146 24833 9003 9183 15406 15406 0.02249610839021443 FPFPQLMRSR 10 Unmodified _FPFPQLMRSR_ 0 0 0 ENST00000376511.6_1_6:30569152-30569314:-|nuORF ENST00000376511.6_1_6:30569152-30569314:-|nuORF ENST00000376511.6_1_6:30569152-30569314:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 639.843994140625 2 639.842425 1277.6703 NaN NaN NaN NaN NaN NaN NaN 89.672 1 83.497 82.997 83.997 -6.1757 0 0 0 0.59691 1 59201 59201 21.537 7.6309 1 13147 12499 9004 9184 15407 15407 0.0425684502781678 FPFQDIEL 8 Unmodified _FPFQDIEL_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7544555664062 2 504.755475 1007.4964 -0.025103 -1.2671E-05 0.7748 0.00039108 0.74969 0.00037841 504.7555247568042 92.643 0.42862 92.186 91.927 92.356 -0.4574 38 19 3 0 0 0 0.72953 2 50579 50579;50681 14.582 4.9146 1 1304200 13148 5578 9005 9185 15408;15409 15408 -0.007050371966784041 FPFQTAVTR 9 Unmodified _FPFQTAVTR_ 0 0 0 REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF REV__ENST00000308086.2_1_12:72057485-72057791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7888793945312 2 533.787641 1065.56073 2.2683 0.0012108 0.99013 0.00052852 3.2585 0.0017393 533.7880799056331 96.104 0.37177 96.105 95.918 96.29 0.0011215 22 12 2 0 0 0 0.070838 1 53366 53366 39.957 3.8303 1 5752300 + 13149 25394 9006 9186 15410 15410 0.030571626801247476 FPFRDRYFHHW 11 Unmodified _FPFRDRYFHHW_ 0 0 0 REV__ENST00000497475.5_1_3:69245990-69247907:-|nuORF REV__ENST00000497475.5_1_3:69245990-69247907:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.4478149414062 4 402.696827 1606.7582 -0.46234 -0.00018618 1.9942 0.00080306 1.5319 0.00061688 402.9484481683102 85.949 0.14221 86.011 85.955 86.097 0.061638 28 9 4 0 0 0 0.30599 1 47591 47591 0.50596 0.41111 1 42874000 + 13150 27977 9007 9187 15411 15411 -0.020908180572178026 FPFREELL 8 Unmodified _FPFREELL_ 0 0 0 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8588256835938 3 350.858804 1049.55458 -0.15198 -5.3323E-05 0.52598 0.00018455 0.374 0.00013122 350.8587755800596 35.292 0.31255 35.319 35.164 35.477 0.027401 35 14 3 0 0 0 0.80624 1 18733 18733 1.8442 0.19162 1 31510000 13151 10300 9008 9188 15412 15412 0.03178644448621526 FPFRIGHIQY 10 Unmodified _FPFRIGHIQY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.89892578125 3 426.564502 1276.67168 0.32084 0.00013686 0.30105 0.00012842 0.62189 0.00026528 426.56456978140096 61.642 0.31303 61.61 61.476 61.789 -0.032787 48 15 4 0 0 0 0.32493 2 33621 33621;33725 26.021 17.269 1 30353000 13152 5608 9009 9189 15413;15414 15413 0.044408023882397174 FPFRIGHIQY 10 Unmodified _FPFRIGHIQY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5649719238281 3 426.564502 1276.67168 1.3176 0.00056204 -0.50282 -0.00021449 0.81478 0.00034756 426.56425316131714 89.673 0.68214 83.498 83.201 83.883 -6.1757 92 37 3 0 0 0 0.13008 3 59083 59083;59207;59324 42.312 25.264 1 40387000 13153 5608 9009 9189 15415;15416;15417 15415 0.044408023882397174 FPFRKDLRM 9 Unmodified _FPFRKDLRM_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.890625 3 403.890221 1208.64883 -0.20591 -8.3165E-05 -0.10298 -4.1593E-05 -0.30889 -0.00012476 403.890242940542 41.265 0.2429 41.263 41.159 41.402 -0.0017929 16 11 2 0 0 0 0.47846 1 22079 22079 8.9762 4.4474 1 2640100 13154 2843 9010 9190 15418 15418 0.05285459999072373 FPFRKDLRM 9 Unmodified _FPFRKDLRM_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.891357421875 3 403.890221 1208.64883 0.84737 0.00034224 1.0083 0.00040723 1.8556 0.00074948 403.89047696131917 45.844 0.31859 40.889 40.745 41.064 -4.9549 31 20 2 0 0 0 0.18144 1 28274 28274 18.721 6.5465 1 7485000 13155 2843 9010 9190 15419 15419 0.05285459999072373 FPFRKDLRM 9 Unmodified _FPFRKDLRM_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8908996582031 3 403.890221 1208.64883 1.4444 0.00058339 1.3429 0.00054237 2.7873 0.0011258 404.2253618745734 79.505 0.9924 73.329 72.967 73.96 -6.1757 162 58 5 0 0 0 0.047788 5 52266 51986;52129;52266;52358;52487 35.612 15.198 1 30593000 13156 2843 9010 9190 15420;15421;15422;15423;15424 15422 0.05285459999072373 FPFRKDLRM 9 Unmodified _FPFRKDLRM_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2243347167969 3 403.890221 1208.64883 0.94986 0.00038364 0.49446 0.00019971 1.4443 0.00058335 403.8901381100924 80.292 0.51321 74.116 73.878 74.391 -6.1757 39 29 2 0 0 0 0.047788 2 52764 52631;52764 35.612 14.595 1 12808000 13157 2843 9010 9190 15425;15426 15426 0.05285459999072373 FPFRPRPVQNF 11 Unmodified _FPFRPRPVQNF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.9231872558594 3 468.922689 1403.74624 1.011 0.00047407 0.17431 8.174E-05 1.1853 0.00055581 468.9228098025938 49.823 0.24107 49.774 49.645 49.886 -0.048824 35 11 4 0 0 0 0.054439 1 26914 26914 53.317 39.798 1 5498900 13158 730 9011 9191 15427 15427 0.060515651996183806 FPFRPRPVQNF 11 Unmodified _FPFRPRPVQNF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2566833496094 3 468.922689 1403.74624 0.20562 9.6421E-05 0.77725 0.00036447 0.98287 0.00046089 468.92291656776564 77.154 0.80933 70.979 70.392 71.202 -6.1757 63 44 2 0 0 0 0.025642 3 50410 50291;50410;50547 59.052 45.534 1 14538000 13159 730 9011 9191 15428;15429;15430 15429 0.060515651996183806 FPFRPRPVQNF 11 Unmodified _FPFRPRPVQNF_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MSMS AL20221201_MKP_PDAC_01 4 468.9235229492188 3 468.922689 1403.74624 NaN NaN NaN NaN NaN NaN NaN 76.678 1 70.502 70.002 71.002 -6.1757 0 0 0 0.63856 1 50156 50156 11.631 8.0387 1 13160 730 9011 9191 15431 15431 0.060515651996183806 FPFSDKLGEL 10 Unmodified _FPFSDKLGEL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8004760742188 2 576.800414 1151.58628 0.53041 0.00030594 0.20716 0.00011949 0.73757 0.00042543 576.8005117349486 73.853 0.50483 73.897 73.612 74.116 0.043983 70 23 4 0 0 0 0.5012 1 40651 40651 18.373 0 1 10899000 13161 2954 9012 9192 15432 15432 0.016545924119100164 FPFSDKLGEL 10 Unmodified _FPFSDKLGEL_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7996826171875 2 576.800414 1151.58628 1.1067 0.00063832 -1.5313 -0.00088327 -0.42468 -0.00024495 576.7995137572218 88.804 0.81601 82.628 82.26 83.076 -6.1757 89 45 2 0 0 0 0.1379 3 58700 58420;58700;58835 55.503 19.037 1 37147000 13162 2954 9012 9192 15433;15434;15435 15434 0.016545924119100164 FPFSENQICL 10 Carbamidomethyl (C) _FPFSENQIC(Carbamidomethyl (C))L_ FPFSENQIC(1)L FPFSENQIC(69)L 0 1 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS AL20221201_MKP_PDAC_01 4 627.7972412109375 2 627.794806 1253.57506 NaN NaN NaN NaN NaN NaN NaN 91.919 1 85.744 85.244 86.244 -6.1757 0 0 0 0.014758 1 60769 60769 69.105 45.084 1 13163 7963 9013 9193 15436 15436 778 -0.041585529538906485 FPFSFPTWS 9 Unmodified _FPFSFPTWS_ 0 0 0 REV__ENST00000336314.8_2_5:154195789-154195924:+|nuORF REV__ENST00000336314.8_2_5:154195789-154195924:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.263916015625 2 558.263468 1114.51238 0.43533 0.00024303 0.15061 8.408E-05 0.58594 0.00032711 558.2635758991458 31.344 0.63577 31.241 30.917 31.553 -0.10269 47 25 2 0 0 0 0.39863 1 16333 16333 12.532 1.7076 1 2692500 + 13164 25646 9014 9194 15437 15437 -0.0402933095977005 FPFSSWGEALF 11 Unmodified _FPFSSWGEALF_ 0 0 0 ENST00000577088.5_1_17:7487180-7490172:+|nuORF;ENSG00000129255|ENST00000250124|MPDU1;ENST00000572836.5_1_17:7487180-7490759:+|nuORF ENST00000577088.5_1_17:7487180-7490172:+|nuORF ENST00000577088.5_1_17:7487180-7490172:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3047485351562 2 644.305864 1286.59717 -0.32673 -0.00021051 -2.3429 -0.0015095 -2.6696 -0.0017201 644.3043606931259 55.983 0.11476 55.914 55.866 55.981 -0.068737 6 5 2 0 0 0 0.6249 1 30445 30445 10.074 1.3285 1 1997200 13165 4126 9015 9195 15438 15438 -0.0346600521381788 FPFSYTRVL 9 Unmodified _FPFSYTRVL_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3072509765625 2 565.305667 1128.59678 1.1241 0.00063545 0.69529 0.00039305 1.8194 0.0010285 565.3061227536496 71.53 0.58359 71.569 71.184 71.768 0.039024 63 26 3 0 0 0 0.044011 2 39327 39327;39429 47.749 20.865 1 5944200 13166 8546;15522 9016 9196 15439;15440 15439 0.03762619857002392 FPFTREEAL 9 Unmodified _FPFTREEAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2858276367188 2 555.284931 1108.55531 NaN NaN NaN NaN NaN NaN NaN 56.127 1 55.641 55.141 56.141 -0.48554 0 0 0 0.27852 1 30465 30465 26.268 5.8536 1 13167 4011 9017 9197 15441 15441 0.005374390976612631 FPFVDDNEV 9 Unmodified _FPFVDDNEV_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2459716796875 2 541.245472 1080.47639 -0.12899 -6.9814E-05 0.78049 0.00042244 0.6515 0.00035262 541.2455337139431 71.008 0.43446 71.008 70.831 71.266 0 69 27 4 0 0 0 0.07087 3 39586 39492;39586;39679 44.407 32.166 1 4711900 13168 3188 9018 9198 15442;15443;15444 15443 -0.06062832927295858 FPFVDDNEV 9 Unmodified _FPFVDDNEV_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.24560546875 2 541.245472 1080.47639 1.0245 0.00055453 -1.5734 -0.00085161 -0.54888 -0.00029708 541.2449701470703 79.857 0.42023 73.681 73.421 73.841 -6.1757 32 25 2 0 0 0 0.044296 2 52356 52346;52356 61.357 23.383 1 19168000 13169 3188 9018 9198 15445;15446 15446 -0.06062832927295858 FPFVNGSAEIM 11 Unmodified _FPFVNGSAEIM_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 606.2935791015625 2 606.291899 1210.56925 NaN NaN NaN NaN NaN NaN NaN 94.609 1 88.433 87.933 88.933 -6.1757 0 0 0 0.094297 1 62664 62664 51.63 35.783 1 13170 1980 9019 9199 15447 15447 -0.027616514655392166 FPFWGVHHL 9 Unmodified _FPFWGVHHL_ 0 0 0 REV__nc|ENSG00000051108|Q15011-4|HERPUD1 REV__nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2499389648438 2 570.292894 1138.57123 0.45776 0.00026106 1.2654 0.00072167 1.7232 0.00098273 570.293518653506 52.88 0.29814 52.816 52.683 52.981 -0.063423 21 14 2 0 0 0 0.203 1 28657 28657 9.3474 0 1 975110 + 13171 17264 9020 9200 15448 15448 0.007491901252478783 FPFWHQCWHFD 11 Unmodified _FPFWHQCWHFD_ 0 0 0 REV__ENST00000563039.2_1_16:29675279-29675321:+|nuORF REV__ENST00000563039.2_1_16:29675279-29675321:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2218627929688 3 517.220518 1548.63972 -0.38445 -0.00019884 1.5428 0.00079798 1.1584 0.00059914 517.221589139987 56.121 0.21246 56.052 55.942 56.155 -0.068737 31 10 4 0 0 0 0.72981 1 30487 30487 1.4551 0.24029 1 11660000 + 13172 28866 9021 9201 15449 15449 -0.11264933357233531 FPFWPAKAL 9 Unmodified _FPFWPAKAL_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.302734375 2 538.80002 1075.58549 -0.15681 -8.4491E-05 0.23583 0.00012706 0.079014 4.2573E-05 538.7999056031704 84.379 0.22147 84.442 84.33 84.552 0.063171 13 9 2 0 0 0 0.023164 1 46694 46694 60.39 27.604 1 12716000 13173 16088;13807 9022 9202 15450 15450 0.050718425535023925 FPFWPAKAL 9 Unmodified _FPFWPAKAL_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7994995117188 2 538.80002 1075.58549 0.96533 0.00052012 0.077171 4.158E-05 1.0425 0.0005617 538.79973632221 98.475 0.26495 92.299 92.163 92.427 -6.1757 45 18 4 0 0 0 0.078417 1 65261 65261 38.151 13.477 1 264550000 13174 16088;13807 9022 9202 15451 15451 0.050718425535023925 FPFYGKPM 8 Oxidation (M) _FPFYGKPM(Oxidation (M))_ FPFYGKPM(1) FPFYGKPM(47) 0 0 1 ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7399597167969 2 501.741314 1001.46807 1.1896 0.00059685 0.046242 2.3201E-05 1.2358 0.00062005 501.7416147662812 46.921 0.243 46.887 46.733 46.976 -0.033417 18 11 2 0 0 0 0.37649 1 25242 25242 46.921 20.58 1 3230400 13175 3902 9023 9203 15452 15452 698 -0.03260058377588848 FPFYGKPM 8 Oxidation (M) _FPFYGKPM(Oxidation (M))_ FPFYGKPM(1) FPFYGKPM(47) 0 0 1 ENSG00000125870|ENST00000246071|SNRPB2;ENST00000478522.1_1_20:16710709-16713038:+|nuORF ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7417602539062 2 501.741314 1001.46807 0.83967 0.00042129 0.008496 4.2628E-06 0.84816 0.00042556 501.7410578947864 47.221 0.35525 47.188 47.105 47.46 -0.033421 30 16 2 0 0 0 0.37649 1 25457 25457 46.921 27.482 1 1950400 13176 3902 9023 9203 15453 15453 698 -0.03260058377588848 FPFYYEIKM 9 Oxidation (M) _FPFYYEIKM(Oxidation (M))_ FPFYYEIKM(1) FPFYYEIKM(46) 0 0 1 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.2982788085938 2 627.299193 1252.58383 1.1565 0.0007255 1.1525 0.00072295 2.309 0.0014485 627.2980750097248 66.377 0.51891 66.386 66.166 66.684 0.0095596 56 25 3 0 0 0 0.047788 1 36364 36364 45.7 28.757 1 8393900 13177 7768 9024 9204 15454 15454 1323 -0.03235579317424708 FPFYYEIKM 9 Unmodified _FPFYYEIKM_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 619.2732543945312 2 619.301736 1236.58892 1.1629 0.00072019 0.91869 0.00056895 2.0816 0.0012891 619.8034987506444 95.594 0.44746 89.418 89.23 89.678 -6.1757 46 27 2 0 0 0 0.087822 1 63479 63479 36.506 10.485 1 9148100 13178 7768 9024 9205 15455 15455 -0.019912754548158773 FPGACGLRY 9 Carbamidomethyl (C) _FPGAC(Carbamidomethyl (C))GLRY_ FPGAC(1)GLRY FPGAC(67)GLRY 0 1 0 ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7532958984375 2 520.752744 1039.49094 0.98493 0.0005129 -1.1176 -0.000582 -0.13269 -6.91E-05 520.7527025164699 46.437 0.59267 46.403 46.161 46.753 -0.033421 94 28 5 0 0 0 0.016184 2 24906 24906;25006 67.344 33.157 1 9162000 13179 3556 9025 9206 15456;15457 15456 357 -0.02723039260126825 FPGACGLRY 9 Carbamidomethyl (C) _FPGAC(Carbamidomethyl (C))GLRY_ FPGAC(1)GLRY FPGAC(78)GLRY 0 1 0 ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.752685546875 2 520.752744 1039.49094 0.59789 0.00031135 0.0042778 2.2277E-06 0.60217 0.00031358 520.7527957061278 52.069 0.6189 46.335 46.107 46.726 -5.7345 68 39 3 0 0 0 0.010877 1 32751 32751 77.984 35.016 1 137600000 13180 3556 9025 9206 15458 15458 357 -0.02723039260126825 FPGAGENGSL 10 Unmodified _FPGAGENGSL_ 0 0 0 ENST00000479530.5_1_3:73482863-73482914:-|nuORF ENST00000479530.5_1_3:73482863-73482914:-|nuORF ENST00000479530.5_1_3:73482863-73482914:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 948.4447021484375 1 948.442137 947.43486 1.1969 0.0011352 0.746 0.00070754 1.9429 0.0018427 948.4429535886883 71.426 0.23485 71.465 71.323 71.557 0.039024 15 10 2 0 0 0 0.24625 1 39318 39318 30.637 2.1497 1 981150 13181 14038 9026 9207 15459 15459 -0.04095968895933311 FPGAPGAK 8 Unmodified _FPGAPGAK_ 0 0 0 nc|ENSG00000139219|P02458-1|COL2A1;ENSG00000139219|ENST00000380518|COL2A1 nc|ENSG00000139219|P02458-1|COL2A1 nc|ENSG00000139219|P02458-1|COL2A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.1907043457031 2 372.705589 743.396624 0.5226 0.00019478 0.071336 2.6588E-05 0.59393 0.00022136 372.70625497937743 43.032 0.12543 43.016 42.978 43.104 -0.015667 7 5 2 0 0 0 8.7369 1 23036 23036 2.8892 0 1 1843300 13182 5140 9027 9208 15460 15460 0.01466189980044419 FPGEAERVAF 10 Unmodified _FPGEAERVAF_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.784912109375 2 561.782556 1121.55056 0.70414 0.00039557 -0.77353 -0.00043455 -0.069389 -3.8982E-05 561.7820181891211 51.403 0.71376 51.403 51.15 51.864 0 94 32 4 0 0 0 0.13297 2 28326 28326;28478 41.956 17.935 1 9015000 13183 9677 9028 9209 15461;15462 15461 -0.005354450451022785 FPGEAERVAF 10 Unmodified _FPGEAERVAF_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.782470703125 2 561.782556 1121.55056 1.63 0.0009157 -1.758 -0.00098762 -0.12802 -7.192E-05 561.7816089952406 46.957 0.18221 46.923 46.794 46.976 -0.033421 13 8 2 0 0 0 0.44373 1 25300 25300 19.257 4.4187 1 2196600 13184 9677 9028 9209 15463 15463 -0.005354450451022785 FPGEAERVAF 10 Unmodified _FPGEAERVAF_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7836303710938 2 561.782556 1121.55056 1.2035 0.00067612 -1.1246 -0.0006318 0.078891 4.4319E-05 561.7822110206316 50.7 0.39316 50.646 50.449 50.842 -0.053875 30 19 2 0 0 0 0.18021 1 27386 27386 36.127 9.2434 1 21894000 13185 9677 9028 9209 15464 15464 -0.005354450451022785 FPGEAERVAF 10 Unmodified _FPGEAERVAF_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.3034057617188 2 561.782556 1121.55056 0.88148 0.0004952 -1.3927 -0.00078242 -0.51127 -0.00028722 561.7820215578249 57.736 0.78351 51.708 51.39 52.173 -6.0275 90 43 3 0 0 0 0.15393 1 36931 36931 34.932 15.675 1 47889000 13186 9677 9028 9209 15465 15465 -0.005354450451022785 FPGHVSQAL 9 Unmodified _FPGHVSQAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2537536621094 2 478.253434 954.492316 0.11834 5.6595E-05 -0.36604 -0.00017506 -0.24771 -0.00011847 478.25320823611935 39.591 0.7332 39.294 39.049 39.782 -0.29716 65 34 2 0 0 0 0.019303 2 20787 20787;20891 64.236 21.268 1 3190800 13187 5356 9029 9210 15466;15467 15466 0.01324918100283412 FPGHVSQAL 9 Unmodified _FPGHVSQAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2535400390625 2 478.253434 954.492316 0.64803 0.00030992 0.13491 6.4519E-05 0.78294 0.00037444 478.2535046106981 44.623 0.7876 39.771 39.461 40.249 -4.852 88 58 2 0 0 0 0.010818 4 27357 27101;27235;27357;27492 78.149 20.678 1 25047000 13188 5356 9029 9210 15468;15469;15470;15471 15470 0.01324918100283412 FPGHVSQAL 9 Unmodified _FPGHVSQAL_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 478.253434 954.492316 0.35685 0.00017067 -0.80686 -0.00038588 -0.45001 -0.00021522 478.25274774869274 39.289 0.44096 39.289 39.154 39.595 0 -0.0024394 -0.00036663 NaN 64.236 27 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1023500 13189 5356 9029 9210 0.01324918100283412 FPGKAFSW 8 Unmodified _FPGKAFSW_ 0 0 0 nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2405700683594 2 470.239796 938.465038 NaN NaN NaN NaN NaN NaN NaN 60.122 1 60.069 59.569 60.569 -0.053062 0 0 0 0.46711 1 32786 32786 43.858 21.406 1 13190 504 9030 9211 15472 15472 -0.006655654401129141 FPGKAFSW 8 Unmodified _FPGKAFSW_ 0 0 0 nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.240966796875 2 470.239796 938.465038 0.29338 0.00013796 -0.02443 -1.1488E-05 0.26895 0.00012647 470.23950507353754 65.643 1.2576 59.467 58.787 60.045 -6.1757 102 72 2 0 0 0 0.27285 3 42349 42349;42483;42762 58.679 26.562 1 17081000 13191 504 9030 9211 15473;15474;15475 15473 -0.006655654401129141 FPGLFYLKL 9 Unmodified _FPGLFYLKL_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000556938.1_1_14:61518778-61518892:+|nuORF ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.552734375 3 366.551311 1096.6321 1.7936 0.00065746 2.045 0.00074961 3.8387 0.0014071 366.55190223165994 20.702 0.21486 18.009 17.882 18.096 -2.693 20 14 2 0 0 0 0.38785 1 11056 11056 13.042 0.16986 1 1992800 13192 5202 9031 9212 15476 15476 0.08765282384797501 FPGLHLENF 9 Unmodified _FPGLHLENF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2742919921875 2 537.274367 1072.53418 0.55737 0.00029946 0.58404 0.00031379 1.1414 0.00061325 537.2746699215428 72.88 0.28766 72.404 72.209 72.497 -0.47588 22 12 2 0 0 0 0.028475 1 39848 39848 56.177 27.69 1 2766100 13193 3128 9032 9213 15477 15477 0.0008147378880494216 FPGLHLENF 9 Unmodified _FPGLHLENF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.274367 1072.53418 0.14364 7.7173E-05 -0.47996 -0.00025787 -0.33632 -0.0001807 537.2741369628673 72.324 0.23253 72.366 72.233 72.465 0.041725 -0.019185 -0.00095113 NaN 56.177 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1998000 13194 3128 9032 9213 0.0008147378880494216 FPGPAGPSF 9 Unmodified _FPGPAGPSF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2;ENST00000588777.1_1_19:12986806-12989487:-|nuORF ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.715576171875 2 438.716153 875.417754 -0.27362 -0.00012004 0.31112 0.00013649 0.037496 1.645E-05 438.716224126836 60.937 1.089 60.447 60.069 61.158 -0.48932 74 52 2 0 0 0 0.045537 2 33281 33281;33497 46.921 8.7697 1 3301400 13195 2340 9033 9214 15478;15479 15478 -0.02493844711091242 FPGPAGPSF 9 Unmodified _FPGPAGPSF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2;ENST00000588777.1_1_19:12986806-12989487:-|nuORF ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4256591796875 1 876.42503 875.417754 0.65148 0.00057097 3.9986 0.0035044 4.65 0.0040754 876.4256512374193 68.196 0.34355 62.02 61.754 62.098 -6.1757 28 19 2 0 0 0 0.000405 2 44520 44392;44520 146.01 77.196 1 12881000 13196 2340 9033 9214 15480;15481 15481 -0.02493844711091242 FPGPAGPSF 9 Unmodified _FPGPAGPSF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2;ENST00000588777.1_1_19:12986806-12989487:-|nuORF ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MSMS AL20221201_MKP_PDAC_01 4 438.7166442871094 2 438.716153 875.417754 NaN NaN NaN NaN NaN NaN NaN 67.92 1 61.744 61.244 62.244 -6.1757 0 0 0 0.0233 1 44289 44289 74.396 20.821 1 13197 2340 9033 9214 15482 15482 -0.02493844711091242 FPGPDIEQL 9 Unmodified _FPGPDIEQL_ 0 0 0 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2590637207031 2 508.258382 1014.50221 0.37656 0.00019139 0.14728 7.4855E-05 0.52384 0.00026625 508.2582737020268 79.773 0.54874 79.773 79.5 80.048 0 60 25 3 0 0 0 0.28047 1 44325 44325 18.135 1.1927 1 2575800 13198 10542 9034 9215 15483 15483 -0.004459386850044211 FPGPDIEQL 9 Unmodified _FPGPDIEQL_ 0 0 0 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 ENSG00000216937|ENST00000639629|CCDC7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.258382 1014.50221 0.60971 0.00030989 0.37206 0.0001891 0.98177 0.00049899 508.2592953826016 80.311 0.3195 79.822 79.665 79.984 -0.48932 0.024476 0.00017586 NaN 18.135 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 464320 13199 10542 9034 9215 -0.004459386850044211 FPGPFEEEM 9 Unmodified _FPGPFEEEM_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1;ENST00000523744.2_2_8:17924585-17924894:-|nuORF XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.3253784179688 2 541.7286 1081.44265 1.15 0.00062301 -0.43914 -0.00023789 0.7109 0.00038512 541.7283171743878 79.32 0.48051 73.144 72.787 73.267 -6.1757 41 26 2 0 0 0 0.12572 1 51909 51909 18.135 16.291 1 7131300 13200 2233 9035 9216 15484 15484 -0.09481577690712584 FPGPLFPVF 9 Unmodified _FPGPLFPVF_ 0 0 0 ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY MSMS AL20221201_MKP_PDAC_01 4 510.78076171875 2 510.781296 1019.54804 NaN NaN NaN NaN NaN NaN NaN 102.11 1 95.935 95.435 96.435 -6.1757 0 0 0 0.24185 1 68532 68532 28.173 6.4266 1 13201 3434 9036 9217 15485 15485 0.039047512878937596 FPGPLLVEL 9 Unmodified _FPGPLLVEL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.5761108398438 1 984.576445 983.569169 1.0906 0.0010738 -2.0401 -0.0020086 -0.94948 -0.00093484 984.5749972421672 101.25 0.12035 95.078 95.004 95.125 -6.1757 13 7 2 0 0 0 0.019979 2 67892 67847;67892 63.563 13.894 1 13418000 13202 5247 9037 9218 15486;15487 15487 0.07672716596766804 FPGPLLVEL 9 Unmodified _FPGPLLVEL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7913208007812 2 492.791861 983.569169 1.0732 0.00052888 0.7967 0.00039261 1.8699 0.00092148 492.7916665383763 101.23 0.15408 95.054 94.99 95.144 -6.1757 14 9 2 0 0 0 0.10925 1 67891 67891 32.117 3.9437 1 26822000 13203 5247 9037 9218 15488 15488 0.07672716596766804 FPGPQYAP 8 Unmodified _FPGPQYAP_ 0 0 0 REV__ENST00000319359.7_1_15:44069169-44069733:-|nuORF REV__ENST00000319359.7_1_15:44069169-44069733:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4335327148438 1 876.42503 875.417754 0.65148 0.00057097 3.9986 0.0035044 4.65 0.0040754 876.4256512374193 68.196 0.34355 62.02 61.754 62.098 -6.1757 28 19 2 0 0 0 0.35156 1 44382 44382 49.669 6.7009 1 12881000 + 13204 25494 9038 9219 15489 15489 -0.024938447111139794 FPGRDFQY 8 Unmodified _FPGRDFQY_ 0 0 0 ENST00000561568.5_1_16:58035485-58036432:+|nuORF;ENST00000561743.5_2_16:58033574-58036432:+|nuORF;ENST00000219281.7_1_16:58035433-58036432:+|nuORF ENST00000561568.5_1_16:58035485-58036432:+|nuORF ENST00000561568.5_1_16:58035485-58036432:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2443237304688 2 515.243067 1028.47158 1.0338 0.00053266 0.096192 4.9562E-05 1.13 0.00058222 515.2431971570361 50.174 0.89462 44.635 44.141 45.036 -5.5391 82 57 2 0 0 0 0.25522 3 31312 31312;31446;31593 61.357 10.502 1 18062000 13205 11023 9039 9220 15490;15491;15492 15490 -0.04151672279385821 FPGRGASQIY 10 Unmodified _FPGRGASQIY_ 0 0 0 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2828369140625 2 548.282723 1094.55089 -0.090889 -4.9833E-05 0.35503 0.00019466 0.26415 0.00014483 548.2828688595157 37.798 1.1104 37.526 37.039 38.15 -0.27133 94 50 2 0 0 0 0.28276 2 19897 19897;20099 28.495 6.9575 1 3353200 13206 8803 9040 9221 15493;15494 15493 0.00739974674752375 FPGRGASQIY 10 Unmodified _FPGRGASQIY_ 0 0 0 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2843017578125 2 548.282723 1094.55089 -0.080964 -4.4391E-05 0.76258 0.00041811 0.68161 0.00037372 548.283241340688 37.589 1.193 37.606 36.937 38.13 0.017036 95 56 2 0 0 0 0.13297 4 19871 19769;19871;19989;20093 41.956 14.327 1 3485000 13207 8803 9040 9221 15495;15496;15497;15498 15496 0.00739974674752375 FPGRGASQIY 10 Unmodified _FPGRGASQIY_ 0 0 0 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2836303710938 2 548.282723 1094.55089 0.86674 0.00047522 0.4097 0.00022463 1.2764 0.00069985 548.2831452510044 42.731 1.1654 38.047 37.377 38.542 -4.6846 169 76 3 0 0 0 0.012821 5 25667 25535;25667;25788;25916;26054 82.529 26.352 1 36197000 13208 8803 9040 9221 15499;15500;15501;15502;15503 15500 0.00739974674752375 FPGRKRRRRRR 11 Unmodified _FPGRKRRRRRR_ 0 0 0 nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC nc|ENSG00000135272|Q9P1T7-1|MDFIC MSMS AL20221201_MKP_PDAC_01 4 514.3246459960938 3 514.325925 1539.95595 NaN NaN NaN NaN NaN NaN NaN 107.11 1 100.94 100.44 101.44 -6.1757 0 0 0 0.9435 1 71663 71663 0 0 1 13209 16206 9041 9222 15504 15504 0.20756665715930467 FPGSAGTALQY 11 Unmodified _FPGSAGTALQY_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MSMS AL20221201_MKP_PDAC_01 4 556.2780151367188 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 62.706 1 56.531 56.031 57.031 -6.1757 0 0 0 0.18984 1 40477 40477 39.95 15.929 1 13210 3538 9042 9223 15505 15505 -0.016271512820139833 FPGSCHVF 8 Carbamidomethyl (C) _FPGSC(Carbamidomethyl (C))HVF_ FPGSC(1)HVF FPGSC(64)HVF 0 1 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7129516601562 2 475.713088 949.411622 1.1186 0.00053212 -0.31919 -0.00015184 0.79937 0.00038027 475.71308590473865 50.538 0.88694 44.999 44.377 45.264 -5.5391 108 56 3 0 0 0 0.24071 3 31819 31406;31688;31819 63.563 33.338 1 40823000 13211 9082 9043 9224 15506;15507;15508 15508 851 -0.06510686214267025 FPGSFQGQAL 10 Unmodified _FPGSFQGQAL_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2667236328125 2 526.263999 1050.51345 0.3162 0.0001664 -0.54177 -0.00028511 -0.22557 -0.00011871 526.2637644270642 67.212 0.73557 66.73 66.295 67.031 -0.48218 78 33 3 0 0 0 0.66569 1 36558 36558 6.7232 0.96273 1 8331100 + 13212 21439 9044 9225 15509 15509 -0.0097911659086094 FPGTWYLE 8 Unmodified _FPGTWYLE_ 0 0 0 nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2 nc|ENSG00000134240|P54868-3|HMGCS2 nc|ENSG00000134240|P54868-3|HMGCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7423400878906 2 506.742368 1011.47018 -0.28177 -0.00014278 0.6327 0.00032061 0.35093 0.00017783 506.74270968275636 69.196 0.2925 68.715 68.58 68.873 -0.48071 21 12 2 0 0 0 0.80763 1 37854 37854 2.0598 0 1 670570 13213 4572 9045 9226 15510 15510 -0.035093063681415515 FPGVPPGRSL 10 Unmodified _FPGVPPGRSL_ 0 0 0 REV__ENST00000499370.6_1_6:167347461-167366008:-|nuORF REV__ENST00000499370.6_1_6:167347461-167366008:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7904663085938 2 513.790184 1025.56581 0.28302 0.00014541 1.2746 0.00065488 1.5576 0.0008003 513.7906679002008 72.665 0.40395 72.707 72.378 72.782 0.041725 31 18 2 0 0 0 0.6785 1 40048 40048 5.2969 0.96765 1 2316300 + 13214 28003 9046 9227 15511 15511 0.05405466542742943 FPHADTIIY 9 Unmodified _FPHADTIIY_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7738037109375 2 538.7742 1075.53385 0.56257 0.0003031 -0.67595 -0.00036419 -0.11338 -6.1088E-05 538.7738775576555 53.695 0.23591 53.695 53.584 53.82 0 15 10 2 0 0 0 0.10247 1 29795 29795 44.407 20.386 1 3177900 13215 7511 9047 9228 15512 15512 -0.000899459310403472 FPHADTIIY 9 Unmodified _FPHADTIIY_ 0 0 0 nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 nc|ENSG00000166575|Q86UB9-2|TMEM135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.77490234375 2 538.7742 1075.53385 0.060567 3.2632E-05 0.53571 0.00028863 0.59628 0.00032126 538.7747021991162 54.258 0.27644 53.791 53.606 53.882 -0.46664 37 13 4 0 0 0 0.30202 1 29414 29414 24.674 8.8267 1 4524700 13216 7511 9047 9228 15513 15513 -0.000899459310403472 FPHAIRIWY 9 Unmodified _FPHAIRIWY_ 0 0 0 nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;nc|ENSG00000148120|Q8N6M6-3|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5541687011719 3 401.553826 1201.63965 0.10115 4.0618E-05 0.47559 0.00019098 0.57674 0.00023159 401.55392473536966 62.163 0.21657 62.13 61.985 62.201 -0.032787 27 10 4 0 0 0 0.12424 1 33935 33935 22.658 18.252 1 12126000 13217 5894 9048 9229 15514 15514 0.04689434705073836 FPHAIRIWY 9 Unmodified _FPHAIRIWY_ 0 0 0 nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;nc|ENSG00000148120|Q8N6M6-3|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5538024902344 3 401.553826 1201.63965 0.41987 0.0001686 0.31727 0.0001274 0.73714 0.000296 401.5541865985866 92.983 0.17393 86.808 86.697 86.871 -6.1757 16 10 2 0 0 0 0.10734 1 61480 61480 29.841 24.438 1 10669000 13218 5894 9048 9229 15515 15515 0.04689434705073836 FPHASNITL 9 Unmodified _FPHASNITL_ 0 0 0 nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A;ENST00000473604.2_1_9:132580793-132585603:-|nuORF nc|ENSG00000136827|O14656-2|TOR1A nc|ENSG00000136827|O14656-2|TOR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2669982910156 2 500.266542 998.51853 0.643 0.00032167 -0.77748 -0.00038895 -0.13448 -6.7275E-05 500.26617637436044 50.373 0.30193 49.981 49.851 50.153 -0.3923 24 14 2 0 0 0 0.010877 1 27105 27105 77.984 45.679 1 9961100 13219 4863 9049 9230 15516 15516 0.01921187271761937 FPHASNITL 9 Unmodified _FPHASNITL_ 0 0 0 nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A;ENST00000473604.2_1_9:132580793-132585603:-|nuORF nc|ENSG00000136827|O14656-2|TOR1A nc|ENSG00000136827|O14656-2|TOR1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.266542 998.51853 1.3508 0.00067577 -1.2398 -0.00062021 0.11107 5.5562E-05 500.26583216099294 50.065 0.15922 50.016 49.907 50.066 -0.048824 0.017658 -0.0002139 NaN 77.984 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1019300 13220 4863 9049 9230 0.01921187271761937 FPHAVSSLLC 10 Unmodified _FPHAVSSLLC_ 0 0 0 ENST00000528393.1_1_11:79699092-79699545:+|nuORF ENST00000528393.1_1_11:79699092-79699545:+|nuORF ENST00000528393.1_1_11:79699092-79699545:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.27685546875 2 537.276052 1072.53755 1.3262 0.00071255 -0.12602 -6.7709E-05 1.2002 0.00064484 537.2760663879242 64.387 0.51457 58.212 57.955 58.47 -6.1757 53 27 2 0 0 0 0.092434 1 41755 41755 48.346 2.3249 1 124200000 13221 14856 9050 9231 15517 15517 0.004184005711749705 FPHDKLLLL 9 Unmodified _FPHDKLLLL_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8905029296875 3 365.890215 1094.64882 0.58325 0.00021341 0.2999 0.00010973 0.88315 0.00032314 365.89027476297434 64.749 0.61967 64.749 64.52 65.14 1.5259E-05 75 30 3 0 0 0 0.078314 2 35514 35412;35514 38.176 10.952 1 15831000 13222 7662 9051 9232 15518;15519 15519 0.10527783270754298 FPHDKLLLL 9 Unmodified _FPHDKLLLL_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8908386230469 3 365.890215 1094.64882 1.6335 0.00059769 0.2294 8.3936E-05 1.8629 0.00068163 365.8901265764972 94.827 0.52419 88.652 88.445 88.969 -6.1757 95 29 5 0 0 0 0.062454 3 62723 62723;62836;62955 41.956 8.5106 1 51400000 13223 7662 9051 9232 15520;15521;15522 15520 0.10527783270754298 FPHEKLLL 8 Unmodified _FPHEKLLL_ 0 0 0 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7990417480469 2 498.797478 995.580402 1.3192 0.00065801 1.4647 0.0007306 2.7839 0.0013886 498.7979758280489 97.97 0.25684 91.794 91.651 91.908 -6.1757 19 15 2 0 0 0 0.48669 1 64958 64958 36.044 3.9272 1 8120800 13224 4902 9052 9233 15523 15523 0.08243538690908281 FPHEKLLLM 9 Unmodified _FPHEKLLLM_ 0 0 0 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5466613769531 3 376.547572 1126.62089 1.2793 0.00048172 -1.2009 -0.00045218 0.078449 2.954E-05 376.5472595944994 91.131 0.55954 84.956 84.659 85.219 -6.1757 51 32 3 0 0 0 0.1773 1 60284 60284 18.373 0 1 14942000 13225 4902 9053 9234 15524 15524 0.06264137019024929 FPHEKLLLM 9 Unmodified _FPHEKLLLM_ 0 0 0 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 nc|ENSG00000137135|Q8N4T4-2|ARHGEF39 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2490844726562 2 564.31772 1126.62089 0.93262 0.00052629 1.7575 0.00099181 2.6902 0.0015181 564.3187743549742 91.166 0.27194 84.99 84.804 85.076 -6.1757 18 15 2 0 0 0 0.16202 1 60225 60225 31.268 8.5321 1 5579100 13226 4902 9053 9234 15525 15525 0.06264137019024929 FPHELEVPAL 10 Unmodified _FPHELEVPAL_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7874755859375 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 70.782 1 70.782 70.282 71.282 0 0 0 0 0.83398 1 39434 39434 10.824 4.1008 1 13227 3803 9054 9235 15526 15526 0.032982986488150345 FPHELEVPAL 10 Unmodified _FPHELEVPAL_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3091430664062 2 576.308406 1150.60226 0.59411 0.00034239 1.1525 0.00066418 1.7466 0.0010066 576.3086037071855 71.288 0.38728 70.811 70.611 70.998 -0.47736 38 16 3 0 0 0 0.051739 2 38968 38968;39079 57.471 41.624 1 4534400 13228 3803 9054 9235 15527;15528 15527 0.032982986488150345 FPHEPWLRL 9 Unmodified _FPHEPWLRL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8855590820312 3 398.885464 1193.63456 0.39787 0.00015871 0.0082699 3.2987E-06 0.40614 0.000162 398.8854377040006 64.987 0.36345 64.987 64.836 65.2 7.6294E-06 33 17 3 0 0 0 0.06294 1 35624 35624 38.615 29.869 1 6569000 13229 367 9055 9236 15529 15529 0.04549130842451632 FPHEPWLRL 9 Unmodified _FPHEPWLRL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8858032226562 3 398.885464 1193.63456 0.23725 9.4634E-05 -0.54512 -0.00021744 -0.30787 -0.00012281 398.8855478979172 93.075 0.28597 86.899 86.754 87.04 -6.1757 26 18 2 0 0 0 0.036857 1 61575 61575 40.725 22.862 1 9655800 13230 367 9055 9236 15530 15530 0.04549130842451632 FPHEQKIKL 9 Unmodified _FPHEQKIKL_ 0 0 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.557861328125 3 380.557236 1138.64988 0.61649 0.00023461 0.89899 0.00034212 1.5155 0.00057673 380.55759161371475 30.338 0.30881 30.258 30.105 30.414 -0.080429 36 11 5 0 0 0 0.037253 1 15725 15725 51.415 23.182 1 10152000 13231 4859 9056 9237 15531 15531 0.08609997639655376 FPHEQKIKL 9 Unmodified _FPHEQKIKL_ 0 0 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5573120117188 3 380.557236 1138.64988 -0.056161 -2.1372E-05 1.3443 0.00051159 1.2882 0.00049022 380.5577416566005 30.025 0.23783 30.055 29.921 30.159 0.030106 23 9 3 0 0 0 0.56799 1 15701 15701 3.3196 0.038334 1 1817000 13232 4859 9056 9237 15532 15532 0.08609997639655376 FPHEQKIKL 9 Unmodified _FPHEQKIKL_ 0 0 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5579528808594 3 380.557236 1138.64988 1.8329 0.00069753 -0.164 -6.2411E-05 1.6689 0.00063511 380.5571821631609 33.807 0.47289 29.822 29.572 30.045 -3.9853 72 25 4 0 0 0 0.076472 2 19444 19323;19444 38.615 11.526 1 36640000 13233 4859 9056 9237 15533;15534 15534 0.08609997639655376 FPHEVNHFF 9 Unmodified _FPHEVNHFF_ 0 0 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8540649414062 3 391.854053 1172.54033 0.8589 0.00033656 -0.15645 -6.1306E-05 0.70245 0.00027526 391.8539972289198 50.203 0.26122 49.811 49.65 49.911 -0.3923 40 12 4 0 0 0 0.047788 1 26994 26994 42.312 24.87 1 10685000 13234 1043 9057 9238 15535 15535 -0.03904007979690505 FPHEVNHFF 9 Unmodified _FPHEVNHFF_ 0 0 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8546447753906 3 391.854053 1172.54033 1.0396 0.00040736 0.32127 0.00012589 1.3608 0.00053325 391.85400855923 49.891 0.32172 49.842 49.665 49.986 -0.048824 41 15 4 0 0 0 0.19127 1 26931 26931 28.495 19.518 1 7121100 13235 1043 9057 9238 15536 15536 -0.03904007979690505 FPHEVNHFF 9 Unmodified _FPHEVNHFF_ 0 0 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.85498046875 3 391.854053 1172.54033 1.4164 0.00055503 0.75038 0.00029404 2.1668 0.00084907 391.8542908150611 55.226 0.34664 49.305 49.143 49.49 -5.9211 34 21 2 0 0 0 0.078314 1 35168 35168 35.612 28.575 1 15385000 13236 1043 9057 9238 15537 15537 -0.03904007979690505 FPHFGFFL 8 Unmodified _FPHFGFFL_ 0 0 0 ENST00000584580.1_1_17:45912634-45914483:+|nuORF ENST00000584580.1_1_17:45912634-45914483:+|nuORF ENST00000584580.1_1_17:45912634-45914483:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2567443847656 2 506.257988 1010.50142 NaN NaN NaN NaN NaN NaN NaN 93.665 1 93.207 92.707 93.707 -0.4574 0 0 0 0.97444 1 51181 51181 0.79363 0 1 13237 15598 9058 9239 15538 15538 -0.0034068854337192533 FPHGGGFVL 9 Unmodified _FPHGGGFVL_ 0 0 0 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;nc|ENSG00000156345|Q8IZL9-3|CDK20 nc|ENSG00000156345|Q8IZL9-3|CDK20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2478942871094 2 465.745245 929.475937 0.33052 0.00015394 -0.15966 -7.4362E-05 0.17086 7.9576E-05 465.7450760499915 60.779 0.64782 60.736 60.457 61.104 -0.04351 54 32 2 0 0 0 0.085487 2 33088 33088;33193 36.466 18.331 1 7047700 13238 13631;6449 9059 9240 15539;15540 15539 0.008378369341926373 FPHGGGFVL 9 Unmodified _FPHGGGFVL_ 0 0 0 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;nc|ENSG00000156345|Q8IZL9-3|CDK20 nc|ENSG00000156345|Q8IZL9-3|CDK20 MSMS AL20221201_MKP_PDAC_01 4 465.7451477050781 2 465.745245 929.475937 NaN NaN NaN NaN NaN NaN NaN 65.9 1 59.724 59.224 60.224 -6.1757 0 0 0 0.15264 1 42817 42817 36.466 7.9793 1 13239 13631;6449 9059 9240 15541 15541 0.008378369341926373 FPHGGGFVL 9 Unmodified _FPHGGGFVL_ 0 0 0 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90586022-90589145:-|nuORF;nc|ENSG00000156345|Q8IZL9-2|CDK20;nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;nc|ENSG00000156345|Q8IZL9-3|CDK20 nc|ENSG00000156345|Q8IZL9-3|CDK20 MSMS AL20221201_MKP_PDAC_01 4 465.7455444335938 2 465.745245 929.475937 NaN NaN NaN NaN NaN NaN NaN 66.089 1 59.914 59.414 60.414 -6.1757 0 0 0 0.15264 1 42959 42959 36.466 4.3492 1 13240 13631;6449 9059 9240 15542 15542 0.008378369341926373 FPHGNPGGTSM 11 Oxidation (M) _FPHGNPGGTSM(Oxidation (M))_ FPHGNPGGTSM(1) FPHGNPGGTSM(110) 0 0 1 ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2404174804688 2 559.240198 1116.46584 1.3576 0.00075922 -0.84298 -0.00047143 0.51461 0.00028779 559.2397766510538 21.283 0.28148 18.568 18.378 18.659 -2.7155 25 18 2 0 0 0 1.3103E-08 2 11318 11318;11434 107.19 78.7 1 4096300 13241 2549 9060 9241 15543;15544 15543 437 -0.08773138853371165 FPHHEFVAL 9 Unmodified _FPHHEFVAL_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1908874511719 3 366.190665 1095.55016 0.47099 0.00017247 -1.5966 -0.00058467 -1.1256 -0.00041219 366.19030300127804 48.235 0.27177 47.882 47.73 48.002 -0.3526 29 13 3 0 0 0 0.12841 1 25852 25852 27.629 20.906 1 4014700 13242 8197 9061 9242 15545 15545 0.006211800257005962 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.5696716308594 3 492.569981 1474.68811 1.0333 0.00050899 -0.21438 -0.00010559 0.81896 0.0004034 492.5698207260026 50.596 0.32623 50.183 50.032 50.358 -0.41351 55 15 5 0 0 0 0.59689 1 27220 27220 6.2344 4.9047 1 28524000 13243 3829;16172 9062 9243 15546 15546 -0.030241612363397508 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 738.3507080078125 2 738.351334 1474.68811 0.65688 0.00048501 -0.098059 -7.2402E-05 0.55882 0.00041261 738.3512475504756 50.598 0.24651 50.185 50.072 50.318 -0.41351 30 11 3 0 0 0 0.065225 1 27233 27233 47.594 39.439 1 5731300 13244 3829;16172 9062 9243 15547 15547 -0.030241612363397508 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.5705871582031 3 492.569981 1474.68811 1.6342 0.00080498 -0.048549 -2.3914E-05 1.5857 0.00078106 492.5698257590547 50.286 0.32658 50.237 50.087 50.413 -0.048824 53 15 5 0 0 0 0.28407 1 27162 27162 17.049 15.834 1 18573000 13245 3829;16172 9062 9243 15548 15548 -0.030241612363397508 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 738.3519287109375 2 738.351334 1474.68811 1.5259 0.0011266 -0.43734 -0.00032291 1.0885 0.00080373 738.852607087552 50.289 0.22477 50.24 50.127 50.352 -0.048824 24 10 3 0 0 0 0.028752 1 27187 27187 55.503 44.008 1 5713200 13246 3829;16172 9062 9243 15549 15549 -0.030241612363397508 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 738.853759765625 2 738.351334 1474.68811 0.95323 0.00070382 -0.17733 -0.00013093 0.7759 0.00057289 738.3510232602914 79.977 0.73875 73.802 73.448 74.186 -6.1757 103 44 3 0 0 0 2.9966E-06 3 52546 52283;52419;52546 99.755 76.504 1 50259000 13247 3829;16172 9062 9243 15550;15551;15552 15552 -0.030241612363397508 FPHHLQEYIEY 11 Unmodified _FPHHLQEYIEY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.5701293945312 3 492.569981 1474.68811 1.0332 0.00050891 0.20925 0.00010307 1.2424 0.00061198 492.57004807693136 79.961 0.75153 73.786 73.435 74.186 -6.1757 130 45 4 0 0 0 0.0069872 3 52560 52294;52429;52560 49.742 45.625 1 83909000 13248 3829;16172 9062 9243 15553;15554;15555 15555 -0.030241612363397508 FPHHPCLRW 9 Unmodified _FPHHPCLRW_ 0 0 0 ENST00000263275.4_2_19:46056483-46056753:-|nuORF ENST00000263275.4_2_19:46056483-46056753:-|nuORF ENST00000263275.4_2_19:46056483-46056753:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1993408203125 3 398.199277 1191.576 -0.22352 -8.9004E-05 -0.79764 -0.00031762 -1.0212 -0.00040662 398.19905650955485 33.354 0.31646 33.195 33.028 33.345 -0.15918 33 12 3 0 0 0 0.53666 1 17353 17353 2.9952 0 1 8663500 13249 11286 9063 9244 15556 15556 -0.012122490036745148 FPHHPLTLA 9 Unmodified _FPHHPLTLA_ 0 0 0 REV__ENST00000497242.1_1_X:153631168-153631932:-|nuORF REV__ENST00000497242.1_1_X:153631168-153631932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7852172851562 2 516.784902 1031.55525 0.075296 3.8912E-05 -0.8457 -0.00043704 -0.7704 -0.00039813 516.7845077788978 35.292 0.2294 35.319 35.186 35.415 0.027401 16 10 2 0 0 0 0.052168 1 18640 18640 44.407 8.3628 1 4339100 + 13250 27976 9064 9245 15557 15557 0.040734838883281554 FPHHPLTLA 9 Unmodified _FPHHPLTLA_ 0 0 0 REV__ENST00000497242.1_1_X:153631168-153631932:-|nuORF REV__ENST00000497242.1_1_X:153631168-153631932:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.784902 1031.55525 0.075296 3.8912E-05 -0.8457 -0.00043704 -0.7704 -0.00039813 516.7845077788978 35.292 0.2294 35.319 35.186 35.415 0.027401 0 0 NaN 44.407 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4339100 + 13251 27976 9064 9245 0.040734838883281554 FPHHVIPDSF 10 Unmodified _FPHHVIPDSF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2013244628906 3 399.201341 1194.58219 0.80917 0.00032302 -0.030331 -1.2108E-05 0.77884 0.00031091 399.2013039705047 49.611 0.2546 49.219 49.098 49.353 -0.3923 31 12 3 0 0 0 0.46077 1 26672 26672 18.373 12.97 1 7733100 13252 8933 9065 9246 15558 15558 -0.0073145229116562405 FPHHVIPDSF 10 Unmodified _FPHHVIPDSF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3002319335938 2 598.298373 1194.58219 0.84017 0.00050267 -0.42045 -0.00025156 0.41972 0.00025112 598.7991545468761 49.63 0.13454 49.238 49.198 49.333 -0.3923 11 6 2 0 0 0 0.30444 1 26714 26714 39.957 30.61 1 6169400 13253 8933 9065 9246 15559 15559 -0.0073145229116562405 FPHHVIPDSF 10 Unmodified _FPHHVIPDSF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.200927734375 3 399.201341 1194.58219 0.34891 0.00013928 -0.2049 -8.1798E-05 0.144 5.7486E-05 399.2011822673051 49.268 0.26258 49.225 49.093 49.355 -0.04369 24 12 2 0 0 0 0.6192 1 26617 26617 10.151 6.5635 1 2914200 13254 8933 9065 9246 15560 15560 -0.0073145229116562405 FPHHVIPDSF 10 Unmodified _FPHHVIPDSF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2027282714844 3 399.201341 1194.58219 0.31285 0.00012489 -0.012173 -4.8596E-06 0.30067 0.00012003 399.2014231182393 26.18 0.30927 23.229 23.112 23.422 -2.9511 31 17 2 0 0 0 0.6192 1 14486 14486 10.151 0.6066 1 12424000 13255 8933 9065 9246 15561 15561 -0.0073145229116562405 FPHHVIPDSF 10 Unmodified _FPHHVIPDSF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2017822265625 3 399.201341 1194.58219 1.1826 0.00047208 -0.20577 -8.2142E-05 0.9768 0.00038994 399.2013917054465 55.497 0.47792 49.575 49.444 49.921 -5.9211 34 28 2 0 0 0 0.66652 1 35371 35371 6.6304 0.84694 1 6659700 13256 8933 9065 9246 15562 15562 -0.0073145229116562405 FPHHVNPVF 9 Unmodified _FPHHVNPVF_ 0 0 0 ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3;CPEB3|p.Q137H|1|0.09|ENSG00000107864|chr10:92239940-92239940|C/A|missense_variant ENSG00000107864|ENST00000265997|CPEB3 ENSG00000107864|ENST00000265997|CPEB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2835693359375 2 547.282526 1092.5505 0.22029 0.00012056 0.89218 0.00048827 1.1125 0.00060883 547.283365146026 42.316 0.21355 42.307 42.187 42.4 -0.0088196 19 9 3 0 0 0 0.040472 1 22648 22648 49.669 30.412 1 6406000 13257 2524 9066 9247 15563 15563 0.007925997455686229 FPHHVNPVF 9 Unmodified _FPHHVNPVF_ 0 0 0 ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3;CPEB3|p.Q137H|1|0.09|ENSG00000107864|chr10:92239940-92239940|C/A|missense_variant ENSG00000107864|ENST00000265997|CPEB3 ENSG00000107864|ENST00000265997|CPEB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.283203125 2 547.282526 1092.5505 1.4173 0.00077567 1.6994 0.00093004 3.1167 0.0017057 547.2832535632597 47.509 0.36453 42.276 42.104 42.468 -5.2339 38 20 3 0 0 0 0.027803 1 29450 29450 56.541 25.905 1 10386000 13258 2524 9066 9247 15564 15564 0.007925997455686229 FPHHVSPGF 9 Unmodified _FPHHVSPGF_ 0 0 0 ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4 ENSG00000113742|ENST00000265085|CPEB4 ENSG00000113742|ENST00000265085|CPEB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.75390625 2 512.753601 1023.49265 NaN NaN NaN NaN NaN NaN NaN 34.059 1 33.868 33.368 34.368 -0.19131 0 0 0 0.0233 1 17778 17778 74.396 56.261 1 13259 2996 9067 9248 15565 15565 -0.018156621798539163 FPHKFEISF 9 Unmodified _FPHKFEISF_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2982788085938 2 576.297842 1150.58113 0.50565 0.0002914 0.83228 0.00047964 1.3379 0.00077105 576.298356371075 60.781 0.35361 60.737 60.613 60.967 -0.04351 48 17 4 0 0 0 0.016448 2 33139 33139;33238 49.554 23.574 1 45910000 13260 10006 9068 9249 15566;15567 15566 0.011863333399332987 FPHKFEISF 9 Unmodified _FPHKFEISF_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5340576171875 3 384.53432 1150.58113 0.26549 0.00010209 0.37738 0.00014512 0.64287 0.0002472 384.53440351380345 60.775 0.3947 60.732 60.553 60.947 -0.04351 67 19 5 0 0 0 0.42049 1 33236 33236 11.495 3.3392 1 67648000 13261 10006 9068 9249 15568 15568 0.011863333399332987 FPHKFEISF 9 Unmodified _FPHKFEISF_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.298583984375 2 576.297842 1150.58113 0.91962 0.00052998 0.29939 0.00017254 1.219 0.00070252 576.297785869394 90.144 0.99274 83.968 83.651 84.644 -6.1757 118 57 3 0 0 0 0.020316 2 59747 59420;59747 55.503 26.421 1 37987000 13262 10006 9068 9249 15569;15570 15570 0.011863333399332987 FPHKRLQQL 9 Unmodified _FPHKRLQQL_ 0 0 0 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5650329589844 3 389.564614 1165.67201 0.066051 2.5731E-05 -0.50514 -0.00019679 -0.43909 -0.00017106 389.5645370048485 22.357 0.21774 22.375 22.235 22.453 0.01749 15 9 2 0 0 0 0.2001 1 11486 11486 27.629 20.02 1 2292900 13263 3930 9069 9250 15571 15571 0.0958022210809304 FPHLLAHTY 9 Unmodified _FPHLLAHTY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8628540039062 3 366.862548 1097.56581 1.2663 0.00046455 -0.364 -0.00013354 0.90228 0.00033101 366.86237152486274 46.717 0.46586 46.684 46.39 46.856 -0.033421 74 22 4 0 0 0 0.0086179 2 25171 25064;25171 78.728 52.46 1 27448000 13264 8762 9070 9251 15572;15573 15573 0.020934665427830623 FPHLLAHTY 9 Unmodified _FPHLLAHTY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7907104492188 2 549.790184 1097.56581 1.3492 0.00074175 -0.47569 -0.00026153 0.87346 0.00048022 549.7897671068283 46.724 0.32186 46.691 46.452 46.774 -0.033421 26 15 2 0 0 0 3.0991E-10 1 25120 25120 170.4 110.01 1 4222700 13265 8762 9070 9251 15574 15574 0.020934665427830623 FPHLLAHTY 9 Unmodified _FPHLLAHTY_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.863037109375 3 366.862548 1097.56581 1.3865 0.00050866 0.14512 5.3237E-05 1.5316 0.0005619 366.86256510045325 77.66 0.78419 71.484 71.081 71.865 -6.1757 78 44 3 0 0 0 0.0090851 3 50629 50629;50776;50905 66.457 41.466 1 14871000 13266 8762 9070 9251 15575;15576;15577 15575 0.020934665427830623 FPHLLQPVL 9 Unmodified _FPHLLQPVL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3178100585938 2 532.318577 1062.6226 0.19655 0.00010463 -0.62981 -0.00033526 -0.43326 -0.00023063 532.3182694340751 77.674 0.42651 77.725 77.487 77.914 0.051521 43 17 3 0 0 0 0.016494 2 42926 42819;42926 67.035 41.636 1 25462000 13267 3762;16168 9071 9252 15578;15579 15579 0.0937951409928246 FPHLLQPVL 9 Unmodified _FPHLLQPVL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3196411132812 2 532.318577 1062.6226 1.2371 0.00065851 -0.33349 -0.00017752 0.90356 0.00048098 532.3186782954331 97.789 0.28 91.614 91.537 91.817 -6.1757 43 18 4 0 0 0 0.016494 1 64800 64800 67.035 41.636 1 208850000 13268 3762;16168 9071 9252 15580 15580 0.0937951409928246 FPHLLQPVL 9 Unmodified _FPHLLQPVL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.318577 1062.6226 -0.55138 -0.00029351 1.0294 0.000548 0.47807 0.00025448 532.3194338745394 78.25 0.11899 77.764 77.68 77.799 -0.48596 0.019406 0.0016818 NaN 67.035 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 350070 13269 3762;16168 9071 9252 0.0937951409928246 FPHLLQTVL 9 Unmodified _FPHLLQTVL_ 0 0 0 ENSG00000136868|ENST00000374212|SLC31A1 ENSG00000136868|ENST00000374212|SLC31A1 ENSG00000136868|ENST00000374212|SLC31A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3165893554688 2 534.316035 1066.61752 0.41825 0.00022348 0.19159 0.00010237 0.60985 0.00032585 534.3157064460798 78.747 0.49582 78.8 78.491 78.987 0.053154 42 19 3 0 0 0 0.12841 2 43437 43437;43586 30.225 13.283 1 4519900 13270 4872 9072 9253 15581;15582 15581 0.08687210236666942 FPHLLQTVL 9 Unmodified _FPHLLQTVL_ 0 0 0 ENSG00000136868|ENST00000374212|SLC31A1 ENSG00000136868|ENST00000374212|SLC31A1 ENSG00000136868|ENST00000374212|SLC31A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.3151245117188 2 534.316035 1066.61752 0.50789 0.00027137 -1.5395 -0.0008226 -1.0317 -0.00055123 534.315698778783 98.647 0.13319 92.471 92.401 92.535 -6.1757 19 9 3 0 0 0 0.038285 1 65454 65454 50.855 0.92203 1 46463000 13271 4872 9072 9253 15583 15583 0.08687210236666942 FPHLMSRR 8 Unmodified _FPHLMSRR_ 0 0 0 ENST00000374677.7_1_6:33168670-33168802:+|nuORF ENST00000374677.7_1_6:33168670-33168802:+|nuORF ENST00000374677.7_1_6:33168670-33168802:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2892456054688 2 522.282003 1042.54945 1.1091 0.00057924 -1.5126 -0.00079003 -0.40358 -0.00021078 522.2821846770433 52.838 0.84065 47.034 46.46 47.301 -5.8042 88 46 3 0 0 0 0.31612 1 33047 33047 53.576 5.2297 1 149170000 13272 12453 9073 9254 15584 15584 0.029880621050097034 FPHLPGKTF 9 Unmodified _FPHLPGKTF_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2672119140625 2 522.287277 1042.56 0.76595 0.00040005 1.3667 0.0007138 2.1326 0.0011139 522.2879327918358 47.291 0.29296 47.252 47.118 47.411 -0.038647 36 13 4 0 0 0 0.048075 1 25535 25535 47.749 29.614 1 5176400 13273 8482 9074 9255 15585 15585 0.04042368031082333 FPHLPGKTFVY 11 Unmodified _FPHLPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.9053344726562 3 435.904524 1304.69174 0.99144 0.00043217 -0.080719 -3.5186E-05 0.91072 0.00039699 435.9044377444962 57.711 0.39538 57.645 57.476 57.871 -0.066036 74 19 5 0 0 0 0.17474 2 31371 31371;31474 33.821 28.708 1 62700000 13274 8482 9075 9256 15586;15587 15586 0.05158553328169546 FPHLPGKTFVY 11 Unmodified _FPHLPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.35302734375 2 653.353148 1304.69174 1.1332 0.0007404 -0.58667 -0.0003833 0.54655 0.00035709 653.352741671489 57.713 0.26191 57.647 57.533 57.795 -0.066036 25 12 3 0 0 0 0.14064 1 31421 31421 32.786 24.04 1 3856000 13275 8482 9075 9256 15588 15588 0.05158553328169546 FPHLPGKTFVY 11 Unmodified _FPHLPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.9048461914062 3 435.904524 1304.69174 0.68222 0.00029738 0.032462 1.415E-05 0.71468 0.00031153 435.9044766242402 84.444 0.94223 78.268 77.606 78.548 -6.1757 135 52 3 0 0 0 0.072475 4 55421 55292;55421;55544;55681 46.022 46.022 1 60945000 13276 8482 9075 9256 15589;15590;15591;15592 15590 0.05158553328169546 FPHLPGKTFVY 11 Unmodified _FPHLPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.8557739257812 2 653.353148 1304.69174 0.47261 0.00030878 0.10441 6.822E-05 0.57702 0.000377 653.3534352723957 84.447 0.49715 78.271 77.948 78.445 -6.1757 42 28 2 0 0 0 0.0128 2 55444 55444;55487 77.049 59.936 1 11883000 13277 8482 9075 9256 15593;15594 15593 0.05158553328169546 FPHLQQPSF 9 Unmodified _FPHLQQPSF_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF;ENST00000473720.5_1_2:130925121-130934177:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7802734375 2 550.779816 1099.54508 0.58191 0.0003205 0.16109 8.8727E-05 0.743 0.00040923 550.7798570522676 56.842 0.37866 56.773 56.517 56.895 -0.068741 41 18 3 0 0 0 0.05483 1 30941 30941 48.346 31.404 1 8472700 13278 4845 9076 9257 15595 15595 -0.0007112383691492141 FPHLSLCL 8 Carbamidomethyl (C) _FPHLSLC(Carbamidomethyl (C))L_ FPHLSLC(1)L FPHLSLC(57)L 0 1 0 REV__ENSG00000188674|ENST00000341287|C2orf80 REV__ENSG00000188674|ENST00000341287|C2orf80 MSMS AL20221201_MKP_PDAC_01 4 493.7597351074219 2 493.760038 985.505523 NaN NaN NaN NaN NaN NaN NaN 90.099 1 83.923 83.423 84.423 -6.1757 0 0 0 0.37735 1 59492 59492 56.541 10.52 1 + 13279 23723 9077 9258 15596 15596 1052 0.0121903288802514 FPHLTVVLL 9 Unmodified _FPHLTVVLL_ 0 0 0 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8213500976562 2 519.820953 1037.62735 0.29287 0.00015224 0.60426 0.00031411 0.89713 0.00046635 519.82126274221 89.398 0.38404 89.446 89.24 89.624 0.047852 31 13 3 0 0 0 0.019979 2 49778 49674;49778 63.563 9.9873 1 45634000 13280 4644 9078 9259 15597;15598 15598 0.11004398242039315 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.8628234863281 3 354.862548 1061.56581 0.2855 0.00010131 0.49676 0.00017628 0.78226 0.00027759 354.86271152339003 48.94 0.4705 48.568 48.35 48.82 -0.37172 79 23 5 0 0 0 0.010818 2 26335 26219;26335 78.149 65.909 1 72312000 13281 5289 9079 9260 15599;15600 15600 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7902221679688 2 531.790184 1061.56581 0.2579 0.00013715 0.074114 3.9413E-05 0.33201 0.00017656 531.7903949977962 48.953 0.36509 48.581 48.369 48.734 -0.37171 53 18 4 0 0 0 0.009483 2 26348 26240;26348 93.883 75.748 1 13733000 13282 5289 9079 9260 15601;15602 15602 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8628234863281 3 354.862548 1061.56581 0.19981 7.0904E-05 0.95738 0.00033974 1.1572 0.00041064 354.86281737905523 48.623 0.33505 48.579 48.359 48.694 -0.04369 41 16 3 0 0 0 0.039985 1 26255 26255 49.933 31.56 1 8094100 13283 5289 9079 9260 15603 15603 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2919311523438 2 531.790184 1061.56581 0.32012 0.00017023 1.178 0.00062644 1.4981 0.00079667 531.7905750445046 48.605 0.2199 48.561 48.434 48.654 -0.04369 17 10 2 0 0 0 0.20428 1 26262 26262 18.135 7.3111 1 1283100 13284 5289 9079 9260 15604 15604 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.86328125 3 354.862548 1061.56581 1.8461 0.00065511 0.12168 4.3179E-05 1.9678 0.00069829 354.8625288757911 54.34 0.43179 48.475 48.266 48.698 -5.8653 72 26 4 0 0 0 0.06294 2 34363 34363;34507 41.84 33.094 1 49163000 13285 5289 9079 9260 15605;15606 15605 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7897338867188 2 531.790184 1061.56581 1.2062 0.00064147 2.0814 0.0011069 3.2876 0.0017483 531.7915549812775 54.322 0.30784 48.457 48.283 48.591 -5.8653 35 18 3 0 0 0 0.023481 1 34411 34411 77.984 41.94 1 20541000 13286 5289 9079 9260 15607 15607 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8628234863281 3 354.862548 1061.56581 1.0395 0.00036889 0.17694 6.279E-05 1.2165 0.00043168 354.862517457665 78.579 1.1374 72.403 71.773 72.911 -6.1757 156 67 3 0 0 0 0.0082661 5 51164 51164;51289;51418;51546;51682 92.491 70.954 1 64728000 13287 5289 9079 9260 15608;15609;15610;15611;15612 15608 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.6289672851562 2 531.790184 1061.56581 0.24639 0.00013103 0.20698 0.00011007 0.45337 0.0002411 531.7903446611334 78.51 0.55438 72.334 72.126 72.68 -6.1757 60 34 2 0 0 0 0.0082661 2 51443 51421;51443 129.2 78.345 1 31832000 13288 5289 9079 9260 15613;15614 15614 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MSMS AL20221201_MKP_PDAC_01 4 531.7914428710938 2 531.790184 1061.56581 NaN NaN NaN NaN NaN NaN NaN 78.362 1 72.186 71.686 72.686 -6.1757 0 0 0 0.019743 1 51290 51290 89.427 35.851 1 13289 5289 9079 9260 15615 15615 0.03749466542740265 FPHLVHAEL 9 Unmodified _FPHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 354.862548 1061.56581 -0.60497 -0.00021468 1.231 0.00043683 0.62602 0.00022215 354.86301242092094 48.722 0.32117 48.722 48.531 48.852 0 0.13558 0.00064674 NaN 78.149 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4606600 13290 5289 9079 9260 0.03749466542740265 FPHMPCAY 8 Carbamidomethyl (C) _FPHMPC(Carbamidomethyl (C))AY_ FPHMPC(1)AY FPHMPC(42)AY 0 1 0 ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7146911621094 2 511.714773 1021.41499 1.0683 0.00054665 -0.87664 -0.00044859 0.19163 9.8061E-05 511.7145035026328 53.752 0.38555 47.948 47.759 48.144 -5.8042 57 24 3 0 0 0 0.42709 1 33928 33928 41.817 29.286 1 31188000 13291 3919 9080 9261 15616 15616 394 -0.0948575943191372 FPHPHIHEY 9 Unmodified _FPHPHIHEY_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000496599.3_1_8:21959616-21960439:+|nuORF;nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B;nc|ENSG00000151553|Q5W0V3-2|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8575439453125 3 392.857686 1175.55123 -0.39549 -0.00015537 2.1372 0.00083963 1.7417 0.00068426 392.8582898561057 29.199 0.11965 29.199 29.142 29.262 0 8 5 2 0 0 0 0.5029 1 15139 15139 7.609 4.7657 1 1042700 13292 6614;6123 9081 9262 15617 15617 -0.029526056053782668 FPHPHIHEY 9 Unmodified _FPHPHIHEY_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000496599.3_1_8:21959616-21960439:+|nuORF;nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B;nc|ENSG00000151553|Q5W0V3-2|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8581237792969 3 392.857686 1175.55123 0.62447 0.00024533 0.38314 0.00015052 1.0076 0.00039585 392.8578928792849 29.015 0.75641 28.953 28.473 29.229 -0.062159 80 32 3 0 0 0 0.087258 4 14975 14779;14880;14975;15076 47.749 39.003 1 20731000 13293 6614;6123 9081 9262 15618;15619;15620;15621 15620 -0.029526056053782668 FPHPHIHEY 9 Unmodified _FPHPHIHEY_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000496599.3_1_8:21959616-21960439:+|nuORF;nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B;nc|ENSG00000151553|Q5W0V3-2|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B MSMS AL20221201_MKP_PDAC_01 4 392.8584899902344 3 392.857686 1175.55123 NaN NaN NaN NaN NaN NaN NaN 32.604 1 28.748 28.248 29.248 -3.8562 0 0 0 0.071041 1 18605 18605 71.922 28.064 1 13294 6614;6123 9081 9262 15622 15622 -0.029526056053782668 FPHPHIHEYLL 11 Unmodified _FPHPHIHEYLL_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000496599.3_1_8:21959616-21960439:+|nuORF;nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B;nc|ENSG00000151553|Q5W0V3-2|FHIP2A ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2469177246094 3 468.247062 1401.71936 1.0582 0.00049551 -0.18621 -8.7191E-05 0.87202 0.00040832 468.2468718643186 50.481 0.28455 50.432 50.25 50.535 -0.048824 23 13 2 0 0 0 0.6607 1 27291 27291 7.9454 6.7306 1 1066700 13295 6614;6123 9082 9263 15623 15623 0.03456456588423862 FPHPRCFYL 9 Unmodified _FPHPRCFYL_ 0 0 0 REV__ENST00000392149.6_1_19:37935818-37958033:-|nuORF REV__ENST00000392149.6_1_19:37935818-37958033:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1980590820312 3 393.863783 1178.56952 NaN NaN NaN NaN NaN NaN NaN 16.847 1 16.847 16.347 17.347 0 0 0 0 0.84369 1 8254 8254 1.1933 0.12188 1 + 13296 26385 9083 9264 15624 15624 -0.012621869550457632 FPHPSHIERY 10 Unmodified _FPHPSHIERY_ 0 0 0 nc|ENSG00000160404|Q8N2E6|TOR2A;nc|ENSG00000160404|Q5JU69-2|TOR2A;ENSG00000160404|ENST00000373284|TOR2A;ENST00000472723.1_1_9:130496559-130497006:-|nuORF nc|ENSG00000160404|Q8N2E6|TOR2A nc|ENSG00000160404|Q8N2E6|TOR2A MSMS AL20221201_MKP_PDAC_01 4 428.2167053222656 3 428.215761 1281.62546 NaN NaN NaN NaN NaN NaN NaN 30.31 1 26.814 26.314 27.314 -3.497 0 0 0 0.014523 1 17100 17100 68.484 46.684 1 13297 6725 9084 9265 15625 15625 -0.004092625138582662 FPHPVNQVTF 10 Unmodified _FPHPVNQVTF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3056640625 2 593.306198 1184.59784 0.16635 9.8697E-05 -0.64731 -0.00038405 -0.48096 -0.00028535 593.3055460453276 54.395 0.24148 53.928 53.784 54.025 -0.46664 19 12 2 0 0 0 0.14917 1 29437 29437 39.957 25.119 1 4364600 13298 1017 9085 9266 15626 15626 0.012928342258874181 FPHPVNQVTF 10 Unmodified _FPHPVNQVTF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3067626953125 2 593.306198 1184.59784 -0.24476 -0.00014522 1.1745 0.00069684 0.92975 0.00055163 593.3067549711303 54.053 0.31778 53.987 53.824 54.142 -0.066936 49 15 4 0 0 0 0.051739 2 29310 29310;29419 57.471 33.451 1 16784000 13299 1017 9085 9266 15627;15628 15627 0.012928342258874181 FPHPVNQVTF 10 Unmodified _FPHPVNQVTF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3054809570312 2 593.306198 1184.59784 0.70704 0.00041949 -0.22659 -0.00013444 0.48044 0.00028505 593.3058746804069 60.274 0.50965 54.159 53.87 54.379 -6.1147 55 26 3 0 0 0 0.013474 2 38881 38746;38881 81.613 43.438 1 53324000 13300 1017 9085 9266 15629;15630 15630 0.012928342258874181 FPHQPSAL 8 Unmodified _FPHQPSAL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7356567382812 2 448.734877 895.455202 0.66746 0.00029951 0.28225 0.00012665 0.9497 0.00042616 448.73494060075063 41.482 0.22911 36.874 36.833 37.062 -4.6079 20 15 2 0 0 0 0.3408 1 24934 24934 50.855 14.811 1 10469000 13301 1104 9086 9267 15631 15631 0.0032924655450869977 FPHQPSAL 8 Unmodified _FPHQPSAL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 448.734877 895.455202 -0.4029 -0.0001808 0.86195 0.00038679 0.45905 0.00020599 448.7353552199641 36.863 0.1984 36.614 36.51 36.708 -0.2497 -0.13023 0.00024731 NaN 50.855 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2384500 13302 1104 9086 9267 0.0032924655450869977 FPHQPSAL 8 Unmodified _FPHQPSAL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 448.734877 895.455202 0.66746 0.00029951 0.28225 0.00012665 0.9497 0.00042616 448.73494060075063 41.482 0.22911 36.874 36.833 37.062 -4.6079 0.13023 -0.00027295 NaN 50.855 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 10469000 13303 1104 9086 9267 0.0032924655450869977 FPHQPSALGY 10 Unmodified _FPHQPSALGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7783813476562 2 558.777274 1115.53999 0.14328 8.0063E-05 0.26226 0.00014654 0.40554 0.00022661 558.7773566129719 44.043 0.23646 43.727 43.611 43.847 -0.31585 32 17 2 0 0 0 0.0015761 1 23422 23422 110.67 62.329 1 81999000 13304 1104 9087 9268 15632 15632 -0.013154276995237524 FPHQPSALGY 10 Unmodified _FPHQPSALGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7770385742188 2 558.777274 1115.53999 0.61348 0.0003428 0.030976 1.7309E-05 0.64446 0.00036011 558.7773134695337 43.749 0.2089 43.733 43.594 43.803 -0.015667 22 9 3 0 0 0 0.0034079 1 23434 23434 103.35 55.008 1 23322000 13305 1104 9087 9268 15633 15633 -0.013154276995237524 FPHQPSALGY 10 Unmodified _FPHQPSALGY_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2796020507812 2 558.777274 1115.53999 1.3567 0.00075808 -0.25929 -0.00014488 1.0974 0.00061319 558.7771241987153 49.593 0.55743 44.054 43.758 44.316 -5.5391 122 34 5 0 0 0 0.0022539 3 30850 30850;30979;31116 107.19 49.716 1 624240000 13306 1104 9087 9268 15634;15635;15636 15634 -0.013154276995237524 FPHRLGLPY 9 Unmodified _FPHRLGLPY_ 0 0 0 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2065124511719 3 367.206426 1098.59745 0.29733 0.00010918 0.57484 0.00021109 0.87218 0.00032027 367.2065549575072 48.398 0.23663 48.354 48.239 48.476 -0.04369 20 11 3 0 0 0 0.28047 1 26111 26111 12.241 7.3436 1 2027900 13307 1271 9088 9269 15637 15637 0.052094592967023345 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.29541015625 2 557.295633 1112.57671 -0.12165 -6.7797E-05 0.79083 0.00044073 0.66918 0.00037293 557.2959445310499 35.085 0.57249 34.862 34.428 35.001 -0.2224 55 25 3 0 0 0 0.10247 1 18306 18306 32.786 19.743 1 2203200 13308 15781 9089 9270 15638 15638 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2938232421875 2 557.295633 1112.57671 -0.23124 -0.00012887 -0.88551 -0.00049349 -1.1168 -0.00062236 557.2953433044117 35.644 0.33754 35.421 35.372 35.71 -0.2224 23 14 2 0 0 0 0.15471 1 18691 18691 27.629 14.586 1 2784800 13309 15781 9089 9270 15639 15639 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7711181640625 2 557.295633 1112.57671 -0.17745 -9.889E-05 2.1754 0.0012123 1.9979 0.0011134 557.2957623152481 35.342 0.30935 35.119 35.001 35.31 -0.2224 30 13 3 0 0 0 0.18118 1 18529 18529 9.3831 0 1 1590000 13310 15781 9089 9270 15640 15640 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.2958984375 2 557.295633 1112.57671 0.28301 0.00015772 0.045857 2.5556E-05 0.32887 0.00018328 557.2956312443749 34.613 3.2188 34.64 33.624 36.842 0.027401 422 149 4 0 0 0 0.0017364 15 18416 17778;17882;17992;18098;18206;18306;18416;18515;18626;18726;18837;18941;19048;19146;19252 134.3 82.027 1 37223000 13311 15781 9089 9270 15641;15642;15643;15644;15645;15646;15647;15648;15649;15650;15651;15652;15653;15654;15655 15647 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8666381835938 3 371.866181 1112.57671 1.1905 0.00044272 0.075915 2.823E-05 1.2664 0.00047095 371.86617782239017 39.611 3.3072 35.16 33.651 36.958 -4.4509 570 219 4 0 0 0 0.095405 15 23117 22598;22726;22858;22981;23117;23256;23385;23515;23652;23789;23929;24060;24188;24448;24589 45.7 29.551 1 472960000 13312 15781 9089 9270 15656;15657;15658;15659;15660;15661;15662;15663;15664;15665;15666;15667;15668;15669;15670 15660 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2953491210938 2 557.295633 1112.57671 0.73576 0.00041004 0.16565 9.2318E-05 0.90141 0.00050235 557.2956052913897 39.504 3.1716 35.054 33.818 36.989 -4.4509 556 211 4 0 0 0 0.0017364 17 24568 22614;22747;22881;23093;23235;23362;23492;23619;23754;23894;24029;24157;24287;24425;24568;24700;24841 134.3 85.914 1 205420000 13313 15781 9089 9270 15671;15672;15673;15674;15675;15676;15677;15678;15679;15680;15681;15682;15683;15684;15685;15686;15687 15685 0.024928689170337748 FPHRLPPSY 9 Unmodified _FPHRLPPSY_ 0 0 0 ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.1863403320312 2 557.295633 1112.57671 NaN NaN NaN NaN NaN NaN NaN 38.194 1 33.825 33.325 34.325 -4.3689 0 0 0 0.13831 1 22498 22498 38.176 21.063 1 13314 15781 9089 9270 15688 15688 0.024928689170337748 FPHRQPLRY 9 Unmodified _FPHRQPLRY_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000486101.1_1_17:73894933-73895551:-|nuORF;nc|ENSG00000204316|Q96DV4-2|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2250366210938 3 405.22448 1212.65161 -0.042809 -1.7347E-05 0.51087 0.00020702 0.46806 0.00018967 405.22470798884285 23.332 0.29549 23.349 23.189 23.485 0.01749 27 14 3 0 0 0 0.085319 1 12035 12035 36.506 27.262 1 23280000 13315 10268 9090 9271 15689 15689 0.053790514482670915 FPHRQPLRY 9 Unmodified _FPHRQPLRY_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000486101.1_1_17:73894933-73895551:-|nuORF;nc|ENSG00000204316|Q96DV4-2|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2249450683594 3 405.22448 1212.65161 0.66201 0.00026826 -0.1548 -6.2727E-05 0.50721 0.00020554 405.2242699770834 26.638 0.39894 23.687 23.522 23.921 -2.9511 57 20 4 0 0 0 0.11784 2 14676 14676;14798 31.268 23.113 1 58655000 13316 10268 9090 9271 15690;15691 15690 0.053790514482670915 FPHRSEKDML 10 Unmodified _FPHRSEKDML_ 0 0 0 nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;ENST00000548021.5_1_12:70671967-70729348:+|nuORF;ENST00000547321.5_1_12:70671967-70723393:+|nuORF nc|ENSG00000111596|Q9NZN8-5|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 MSMS AL20221201_MKP_PDAC_01 4 420.5449829101562 3 420.54489 1258.61284 NaN NaN NaN NaN NaN NaN NaN 27.694 1 24.658 24.158 25.158 -3.0365 0 0 0 0.49971 1 15368 15368 17.863 5.6356 1 13317 2796 9091 9272 15692 15692 -0.006120419684066292 FPHRSLLY 8 Unmodified _FPHRSLLY_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.786865234375 2 516.784902 1031.55525 0.87535 0.00045237 -0.20405 -0.00010545 0.6713 0.00034692 516.7849271119134 39.336 0.30817 34.885 34.734 35.042 -4.4509 33 18 2 0 0 0 0.40035 1 23299 23299 44.407 14.182 1 20607000 13318 16555 9092 9273 15693 15693 0.040734838883281554 FPHSAHQKY 9 Unmodified _FPHSAHQKY_ 0 0 0 ENST00000481798.1_1_3:40499446-40503006:+|nuORF;ENSG00000188846|ENST00000396203|RPL14 ENST00000481798.1_1_3:40499446-40503006:+|nuORF ENST00000481798.1_1_3:40499446-40503006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.1867065429688 3 372.185802 1113.53558 0.72657 0.00027042 0.69832 0.00025991 1.4249 0.00053032 372.18600274196586 15.605 0.3171 13.078 12.893 13.21 -2.5273 210 76 4 0 0 0 0.30202 1 7978 7978 16.566 8.4104 1 27789000 13319 9703 9093 9274 15694 15694 -0.01664892122425954 FPHSAHQKY 9 Unmodified _FPHSAHQKY_ 0 0 0 ENST00000481798.1_1_3:40499446-40503006:+|nuORF;ENSG00000188846|ENST00000396203|RPL14 ENST00000481798.1_1_3:40499446-40503006:+|nuORF ENST00000481798.1_1_3:40499446-40503006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7760620117188 2 557.775065 1113.53558 0.29246 0.00016313 1.0458 0.00058332 1.3383 0.00074645 557.775627073045 15.578 0.054342 13.05 13.029 13.083 -2.5273 15 12 2 0 0 0 0.20428 1 8022 8022 22.736 11.096 1 1472100 13320 9703 9093 9274 15695 15695 -0.01664892122425954 FPHSEITTL 9 Unmodified _FPHSEITTL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2273559570312 2 522.771657 1043.52876 -0.28111 -0.00014696 2.3711 0.0012396 2.09 0.0010926 522.773181218055 48.576 0.26295 48.576 48.452 48.715 0 20 12 2 0 0 0 0.18521 1 26663 26663 16.942 8.349 1 2038000 13321 8954 9094 9275 15696 15696 0.008737502063240754 FPHSEITTL 9 Unmodified _FPHSEITTL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7725219726562 2 522.771657 1043.52876 0.18257 9.5443E-05 1.1984 0.0006265 1.381 0.00072194 522.7723672030983 48.86 0.22783 48.489 48.369 48.597 -0.37172 26 11 3 0 0 0 0.013472 1 26226 26226 70.716 28.621 1 4407400 13322 8954 9094 9275 15697 15697 0.008737502063240754 FPHSEITTL 9 Unmodified _FPHSEITTL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS AL20221201_MKP_PDAC_01 4 522.7713623046875 2 522.771657 1043.52876 NaN NaN NaN NaN NaN NaN NaN 54.551 1 48.686 48.186 49.186 -5.8653 0 0 0 0.043758 1 34620 34620 60.39 3.8483 1 13323 8954 9094 9275 15698 15698 0.008737502063240754 FPHSMEPQL 9 Oxidation (M) _FPHSM(Oxidation (M))EPQL_ FPHSM(1)EPQL FPHSM(55)EPQL 0 0 1 ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2562255859375 2 551.255317 1100.49608 0.36323 0.00020023 0.15834 8.7286E-05 0.52157 0.00028752 551.2554004464232 37.319 0.27846 37.319 37.18 37.458 0 31 14 3 0 0 0 0.031062 1 19835 19835 54.774 12.934 1 5277300 13324 745 9095 9276 15699 15699 116 -0.05014780188162149 FPHSMEPQL 9 Oxidation (M) _FPHSM(Oxidation (M))EPQL_ FPHSM(1)EPQL FPHSM(55)EPQL 0 0 1 ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MSMS AL20221201_MKP_PDAC_01 4 551.255126953125 2 551.255317 1100.49608 NaN NaN NaN NaN NaN NaN NaN 42.419 1 37.735 37.235 38.235 -4.6846 0 0 0 0.056448 1 25630 25630 54.774 18.647 1 13325 745 9095 9276 15700 15700 116 -0.05014780188162149 FPHSMEPQL 9 Unmodified _FPHSMEPQL_ 0 0 0 ENSG00000053372|ENST00000330263|MRTO4;ENST00000515049.1_1_17:48016676-48017012:+|nuORF ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2587280273438 2 543.257859 1084.50117 0.72616 0.00039449 1.8061 0.0009812 2.5323 0.0013757 543.2588549824802 54.51 0.36626 48.645 48.469 48.835 -5.8653 37 22 2 0 0 0 0.031062 1 34513 34513 54.774 33.237 1 26240000 13326 745 9095 9277 15701 15701 -0.03770476325553318 FPHSMQNLVSY 11 Unmodified _FPHSMQNLVSY_ 0 0 0 REV__ENST00000455502.5_1_7:93540047-93540227:+|nuORF REV__ENST00000455502.5_1_7:93540047-93540227:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.5439147949219 3 441.544779 1321.61251 NaN NaN NaN NaN NaN NaN NaN 38.684 1 38.397 37.897 38.897 -0.28687 0 0 0 0.91154 1 20375 20375 3.0723 0 1 + 13327 27243 9096 9278 15702 15702 -0.0354346168826396 FPHSPNSSY 9 Unmodified _FPHSPNSSY_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1;nc|ENSG00000170365|Q15797-2|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.23046875 2 518.230156 1034.44576 -0.36722 -0.00019031 -0.28213 -0.00014621 -0.64935 -0.00033651 518.2300174278708 27.101 0.30203 27.101 26.93 27.232 0 30 14 3 0 0 0 0.05447 2 13918 13918;14013 43.858 17.517 1 3678000 13328 7976 9097 9279 15703;15704 15703 -0.07008566521653847 FPHSSSLRY 9 Unmodified _FPHSSSLRY_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1859741210938 3 365.185691 1092.53524 0.63961 0.00023358 -0.38414 -0.00014028 0.25547 9.3295E-05 365.1857807365702 30.184 0.1775 30.104 30.027 30.205 -0.080431 15 6 3 0 0 0 0.14859 1 15667 15667 28.234 15.361 1 2182600 13329 8085 9098 9280 15705 15705 -0.007323118422846164 FPHSSSLRY 9 Unmodified _FPHSSSLRY_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1875305175781 3 365.185691 1092.53524 2.0501 0.00074866 0.59721 0.00021809 2.6473 0.00096675 365.1860949634196 33.818 0.3953 29.833 29.627 30.022 -3.9853 65 21 4 0 0 0 0.20389 2 19366 19366;19501 22.775 9.9024 1 18900000 13330 8085 9098 9280 15706;15707 15706 -0.007323118422846164 FPHSSSLRY 9 Unmodified _FPHSSSLRY_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 365.185691 1092.53524 -0.089794 -3.2792E-05 0.56948 0.00020797 0.47969 0.00017518 365.1858576273471 29.896 0.23623 29.926 29.811 30.047 0.030106 -0.028307 0.00018908 NaN 28.234 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1835000 13331 8085 9098 9280 -0.007323118422846164 FPHTAIRY 8 Unmodified _FPHTAIRY_ 0 0 0 nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC nc|ENSG00000141905|P08651-4|NFIC nc|ENSG00000141905|P08651-4|NFIC MSMS AL20221201_MKP_PDAC_01 4 502.7696228027344 2 502.769252 1003.52395 NaN NaN NaN NaN NaN NaN NaN 38.041 1 33.672 33.172 34.172 -4.3689 0 0 0 0.1883 1 22391 22391 85.357 24.967 1 13332 5379 9099 9281 15708 15708 0.022329108542294307 FPHTPDNSF 9 Unmodified _FPHTPDNSF_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5;nc|ENSG00000167889|Q3V5L5-5|MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B;nc|ENSG00000167889|Q3V5L5-2|MGAT5B ENSG00000152127|ENST00000281923|MGAT5;nc|ENSG00000167889|Q3V5L5-2|MGAT5B ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2374877929688 2 531.237981 1060.46141 0.068882 3.6593E-05 -1.0491 -0.0005573 -0.98018 -0.00052071 531.2368537970988 39.915 0.17813 39.618 39.512 39.69 -0.29716 14 8 2 0 0 0 0.5029 1 21098 21098 7.2892 2.96 1 1426700 13333 6165;16363 9100 9282 15709 15709 -0.0664028000462622 FPHTPDNSF 9 Unmodified _FPHTPDNSF_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5;nc|ENSG00000167889|Q3V5L5-5|MGAT5B;ENSG00000167889|ENST00000569840|MGAT5B;nc|ENSG00000167889|Q3V5L5-2|MGAT5B ENSG00000152127|ENST00000281923|MGAT5;nc|ENSG00000167889|Q3V5L5-2|MGAT5B ENSG00000152127|ENST00000281923|MGAT5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.237981 1060.46141 0.40179 0.00021345 -2.4481 -0.0013005 -2.0463 -0.0010871 531.2365188739539 39.512 0.14689 39.512 39.448 39.595 0 -0.053028 -0.00063374 NaN 7.2892 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2048100 13334 6165;16363 9100 9282 -0.0664028000462622 FPHTQWHWA 9 Unmodified _FPHTQWHWA_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 605.2845458984375 2 605.283057 1208.55156 0.66472 0.00040234 1.0071 0.00060957 1.6718 0.0010119 605.7851058668476 71.765 0.74674 65.59 65.151 65.898 -6.1757 53 40 2 0 0 0 0.19298 1 46857 46857 2.0598 0 1 33608000 + 13335 24211 9101 9283 15710 15710 -0.04437185885535655 FPHTTPSM 8 Oxidation (M) _FPHTTPSM(Oxidation (M))_ FPHTTPSM(1) FPHTTPSM(43) 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7106323242188 2 467.210378 932.406203 0.025827 1.2067E-05 -0.30184 -0.00014102 -0.27601 -0.00012895 467.21031450420935 21.308 0.23169 21.308 21.189 21.421 0 51 29 2 0 0 0 0.41521 1 10738 10738 42.968 16.627 1 2526100 13336 9909;15126 9102 9284 15711 15711 1594 -0.06270409796729837 FPHTTPSM 8 Oxidation (M) _FPHTTPSM(Oxidation (M))_ FPHTTPSM(1) FPHTTPSM(60) 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2114868164062 2 467.210378 932.406203 -0.32675 -0.00015266 -0.50429 -0.00023561 -0.83104 -0.00038827 467.21041925196016 21.218 0.17211 21.247 21.154 21.326 0.028355 17 8 3 0 0 0 0.2655 1 10756 10756 59.795 35.121 1 1619300 13337 9909;15126 9102 9284 15712 15712 1594 -0.06270409796729837 FPHTTPSM 8 Oxidation (M) _FPHTTPSM(Oxidation (M))_ FPHTTPSM(1) FPHTTPSM(71) 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2104187011719 2 467.210378 932.406203 0.21654 0.00010117 -2.3147 -0.0010815 -2.0982 -0.00098029 467.20919827915526 24.36 0.26437 21.533 21.428 21.693 -2.8273 33 14 3 0 0 0 0.19755 1 13237 13237 70.865 28.77 1 12221000 13338 9909;15126 9102 9284 15713 15713 1594 -0.06270409796729837 FPHTTPSM 8 Unmodified _FPHTTPSM_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2140808105469 2 459.212921 916.411288 1.1149 0.00051199 0.011635 5.3431E-06 1.1266 0.00051734 459.2130240859036 37.932 0.35186 33.563 33.381 33.733 -4.3689 50 20 3 0 0 0 0.21786 2 22244 22244;22378 67.035 45.289 1 20668000 13339 9909;15126 9102 9285 15714;15715 15714 -0.05026105934121006 FPHTYIRA 8 Unmodified _FPHTYIRA_ 0 0 0 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7684326171875 2 502.769252 1003.52395 0.15329 7.7069E-05 -0.13664 -6.8701E-05 0.016644 8.368E-06 502.76905655506476 33.958 0.13314 33.987 33.881 34.014 0.028934 8 5 2 0 0 0 0.72664 1 17896 17896 14.838 0 1 1391900 13340 8871 9103 9286 15716 15716 0.022329108542294307 FPHWAEEFF 9 Unmodified _FPHWAEEFF_ 0 0 0 ENST00000555746.5_3_14:35452094-35465902:+|nuORF ENST00000555746.5_3_14:35452094-35465902:+|nuORF ENST00000555746.5_3_14:35452094-35465902:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.82763671875 2 605.271824 1208.5291 1.1358 0.00068744 -1.3141 -0.00079537 -0.17831 -0.00010793 605.2709370960437 41.796 0.33443 37.188 37.077 37.412 -4.6079 36 20 2 0 0 0 0.20528 1 25153 25153 4.756 2.9118 1 7528100 13341 15232 9104 9287 15717 15717 -0.06682830073827972 FPHYGFPTY 9 Unmodified _FPHYGFPTY_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7614135742188 2 564.761092 1127.50763 0.63738 0.00035997 -0.067176 -3.7938E-05 0.5702 0.00032203 564.7608211191646 60.104 0.24446 60.051 59.918 60.163 -0.053062 22 13 2 0 0 0 0.039985 1 32766 32766 67.035 40.152 1 6988400 13342 2642 9105 9288 15718 15718 -0.05102215102510854 FPIANGPNL 9 Unmodified _FPIANGPNL_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7567138671875 2 471.75581 941.497067 0.42261 0.00019937 0.16591 7.8269E-05 0.58852 0.00027764 471.75604853527744 63.147 0.4677 62.66 62.501 62.969 -0.48617 31 21 2 0 0 0 0.25297 1 34450 34450 19.439 5.9311 1 1202600 13343 402 9106 9289 15719 15719 0.023978022430469537 FPIASSVPP 9 Unmodified _FPIASSVPP_ 0 0 0 ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.75341796875 2 457.752736 913.490919 0.33798 0.00015471 1.1968 0.00054785 1.5348 0.00070257 457.75302930828184 34.613 0.56957 34.64 34.143 34.713 0.027401 40 26 2 0 0 0 0.39863 2 18133 18133;18252 12.532 3.1841 1 1371500 13344 7127 9107 9290 15720;15721 15720 0.030712840115256768 FPIASSVPP 9 Unmodified _FPIASSVPP_ 0 0 0 ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7537536621094 2 457.752736 913.490919 0.25333 0.00011596 1.6427 0.00075193 1.896 0.0008679 457.75351679882897 35.021 0.55411 35.048 34.733 35.287 0.027401 39 25 2 0 0 0 0.39863 1 18508 18508 12.532 0.89125 1 1492400 13345 7127 9107 9290 15722 15722 0.030712840115256768 FPIDHFTHI 9 Unmodified _FPIDHFTHI_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1946716308594 3 376.194186 1125.56073 0.074796 2.8138E-05 -0.18694 -7.0326E-05 -0.11214 -4.2188E-05 376.1941873984421 55.8 0.26939 55.322 55.132 55.401 -0.47798 31 12 3 0 0 0 0.05447 1 30250 30250 40.239 15.248 1 4529000 13346 6383 9108 9291 15723 15723 0.002971626801581806 FPIDKPPSF 9 Unmodified _FPIDKPPSF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.279541015625 2 524.279118 1046.54368 0.18828 9.8712E-05 0.72048 0.00037773 0.90876 0.00047644 524.2794290735455 58.925 0.93855 58.434 57.982 58.921 -0.49079 153 44 5 0 0 0 0.020973 5 32153 31858;31958;32058;32153;32262 62.573 32.348 1 38990000 13347 4271 9109 9292 15724;15725;15726;15727;15728 15727 0.022272420743320254 FPIDKPPSF 9 Unmodified _FPIDKPPSF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.279541015625 2 524.279118 1046.54368 0.54919 0.00028793 -0.14366 -7.5318E-05 0.40553 0.00021261 524.2791289449509 58.522 0.96519 58.461 58.038 59.003 -0.060719 178 48 6 0 0 0 0.013041 5 32090 31684;31787;31887;31990;32090 71.922 39.617 1 53071000 13348 4271 9109 9292 15729;15730;15731;15732;15733 15733 0.022272420743320254 FPIDKPPSF 9 Unmodified _FPIDKPPSF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.279296875 2 524.279118 1046.54368 0.94847 0.00049726 0.12821 6.722E-05 1.0767 0.00056448 524.2791282154367 64.888 1.0455 58.712 58.298 59.344 -6.1757 170 58 4 0 0 0 0.015688 5 42263 41858;41998;42127;42263;42394 67.838 51.63 1 336030000 13349 4271 9109 9292 15734;15735;15736;15737;15738 15737 0.022272420743320254 FPIEAGDMF 9 Unmodified _FPIEAGDMF_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7349853515625 2 513.733686 1025.45282 1.0123 0.00052003 -0.051506 -2.6461E-05 0.96075 0.00049357 513.7336874957662 89.693 0.76651 83.517 83.201 83.968 -6.1757 75 42 2 0 0 0 0.038285 3 59253 59133;59253;59374 50.855 31.416 1 18863000 13350 6952 9110 9293 15739;15740;15741 15740 -0.0588896996546282 FPIEDASNKL 10 Unmodified _FPIEDASNKL_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;ENST00000525408.1_1_11:118390286-118392884:+|nuORF;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A ENSG00000272333|ENST00000420124|KMT2B;nc|ENSG00000118058|Q03164-2|KMT2A ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.298583984375 2 567.295496 1132.57644 0.77374 0.00043894 0.026913 1.5268E-05 0.80065 0.00045421 567.2956584152182 47.628 0.40511 47.628 47.384 47.789 0 37 18 3 0 0 0 0.42967 1 26120 26120 22.658 6.8109 1 1829800 13351 10887;3348 9111 9294 15742 15742 0.015454044065336348 FPIEIDSTDY 10 Unmodified _FPIEIDSTDY_ 0 0 0 ENSG00000061794|ENST00000081029|MRPS35;nc|ENSG00000061794|P82673-2|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.778564453125 2 600.276969 1198.53938 -0.41104 -0.00024674 0.80837 0.00048524 0.39733 0.00023851 600.2771119202964 70.977 0.40852 70.977 70.873 71.281 0 28 19 2 0 0 0 0.5802 1 39554 39554 19.257 14.026 1 697150 13352 841 9112 9295 15743 15743 -0.05194311929903961 FPIEIDSTDY 10 Unmodified _FPIEIDSTDY_ 0 0 0 ENSG00000061794|ENST00000081029|MRPS35;nc|ENSG00000061794|P82673-2|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 MSMS AL20221201_MKP_PDAC_01 4 600.278076171875 2 600.276969 1198.53938 NaN NaN NaN NaN NaN NaN NaN 79.815 1 73.639 73.139 74.139 -6.1757 0 0 0 0.61655 1 52334 52334 30.637 10.183 1 13353 841 9112 9295 15744 15744 -0.05194311929903961 FPIEKTREHY 10 Unmodified _FPIEKTREHY_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.5635375976562 3 440.562938 1318.66699 -0.12289 -5.4142E-05 0.17473 7.698E-05 0.05184 2.2839E-05 440.5630287148109 23.579 0.30746 23.579 23.407 23.714 0 32 15 3 0 0 0 0.57918 1 11995 11995 12.228 7.8214 1 1393500 13354 16035 9113 9296 15745 15745 0.020398734548052744 FPIEKTREHY 10 Unmodified _FPIEKTREHY_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.5631408691406 3 440.562938 1318.66699 0.47231 0.00020808 1.5246 0.00067169 1.9969 0.00087978 440.56395261163703 26.411 0.56034 23.46 23.078 23.638 -2.9511 56 30 3 0 0 0 0.1379 1 14607 14607 41.347 19.81 1 15606000 13355 16035 9113 9296 15746 15746 0.020398734548052744 FPIENRDVL 9 Unmodified _FPIENRDVL_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000576713.6_1_17:79534551-79539120:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7989501953125 2 551.798206 1101.58186 1.0798 0.00059584 0.60345 0.00033298 1.6833 0.00092883 551.7988180840231 59.317 0.53249 53.242 52.92 53.452 -6.0745 46 29 2 0 0 0 0.01958 1 38047 38047 63.961 20.102 1 21823000 13356 9054 9114 9297 15747 15747 0.03513127989003806 FPIEVRHY 8 Unmodified _FPIEVRHY_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1905822753906 3 354.190665 1059.55016 0.47816 0.00016936 1.0595 0.00037526 1.5376 0.00054462 354.19065489496336 40.4 0.47932 40.103 39.882 40.362 -0.29716 59 22 4 0 0 0 0.52622 1 21317 21317 32.786 13.529 1 6554300 13357 3956;8360 9115 9298 15748 15748 0.022771800257032737 FPIEVRHY 8 Unmodified _FPIEVRHY_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MSMS AL20221201_MKP_PDAC_01 4 354.1906127929688 3 354.190665 1059.55016 NaN NaN NaN NaN NaN NaN NaN 44.8 1 39.948 39.448 40.448 -4.852 0 0 0 0.62748 1 27391 27391 26.268 7.0112 1 13358 3956;8360 9115 9298 15749 15749 0.022771800257032737 FPIEVRHY 8 Unmodified _FPIEVRHY_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 354.190665 1059.55016 1.2251 0.00043392 7.2716 0.0025755 8.4967 0.0030095 354.19222432845316 44.964 0.078938 40.112 40.069 40.148 -4.852 0.0045346 0.0063323 NaN 32.786 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3428000 13359 3956;8360 9115 9298 0.022771800257032737 FPIEVRHYL 9 Unmodified _FPIEVRHYL_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8855285644531 3 391.885353 1172.63423 0.051541 2.0198E-05 0.43979 0.00017235 0.49134 0.00019255 391.8854866204938 55.175 0.33855 55.107 54.96 55.298 -0.068741 46 16 4 0 0 0 0.098164 2 29952 29952;30049 33.445 21.204 1 16349000 13360 3956;8360 9116 9299 15750;15751 15750 0.05481711122615707 FPIEVRHYL 9 Unmodified _FPIEVRHYL_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3255004882812 2 587.324391 1172.63423 0.35332 0.00020751 0.18901 0.00011101 0.54233 0.00031852 587.3243909057289 55.135 0.25966 55.066 55.019 55.278 -0.068737 21 12 2 0 0 0 0.044042 1 29969 29969 43.772 19.752 1 3299900 13361 3956;8360 9116 9299 15752 15752 0.05481711122615707 FPIEVRHYL 9 Unmodified _FPIEVRHYL_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8859252929688 3 391.885353 1172.63423 1.2525 0.00049085 -0.078786 -3.0875E-05 1.1737 0.00045997 391.8853639639606 83.486 0.72055 77.31 76.846 77.567 -6.1757 79 38 3 0 0 0 0.044296 3 54831 54697;54831;54963 47.594 28.873 1 17858000 13362 3956;8360 9116 9299 15753;15754;15755 15754 0.05481711122615707 FPIEYHDIW 9 Unmodified _FPIEYHDIW_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.2932739257812 2 610.292756 1218.57096 0.76403 0.00046628 0.15181 9.2651E-05 0.91584 0.00055893 610.2927570731823 74.397 0.84906 73.921 73.527 74.376 -0.47588 105 35 4 0 0 0 0.011291 5 40697 40564;40593;40697;40793;40899 85.272 62.536 1 9351800 13363 8150 9117 9300 15756;15757;15758;15759;15760 15758 -0.029582743852870408 FPIEYHDIW 9 Unmodified _FPIEYHDIW_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.2931518554688 2 610.292756 1218.57096 0.48465 0.00029578 -0.17274 -0.00010542 0.3119 0.00019035 610.2925058127383 73.85 0.6227 73.894 73.635 74.258 0.043983 72 28 3 0 0 0 0.013609 3 40739 40635;40739;40851 68.081 55.038 1 11698000 13364 8150 9117 9300 15761;15762;15763 15762 -0.029582743852870408 FPIEYHDIW 9 Unmodified _FPIEYHDIW_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7951049804688 2 610.292756 1218.57096 1.1608 0.00070844 0.25375 0.00015486 1.4146 0.0008633 610.2928751617458 88.107 1.6613 81.931 81.203 82.865 -6.1757 282 92 4 0 0 0 0.0089732 8 57820 57820;57950;58070;58189;58319;58448;58575;58719 108 83.976 1 162370000 13365 8150 9117 9300 15764;15765;15766;15767;15768;15769;15770;15771 15764 -0.029582743852870408 FPIEYHDIWQM 11 Oxidation (M) _FPIEYHDIWQM(Oxidation (M))_ FPIEYHDIWQM(1) FPIEYHDIWQM(60) 0 0 1 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 747.8399658203125 2 747.839745 1493.66494 0.42526 0.00031803 0.66746 0.00049915 1.0927 0.00081718 747.839416811121 69.785 0.40463 69.816 69.592 69.997 0.030914 52 20 3 0 0 0 0.017265 1 38373 38373 60.074 40.712 1 5684800 13366 8150 9118 9301 15772 15772 1380 -0.06214923345328316 FPIEYHDIWQM 11 Oxidation (M) _FPIEYHDIWQM(Oxidation (M))_ FPIEYHDIWQM(1) FPIEYHDIWQM(110) 0 0 1 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 747.8414306640625 2 747.839745 1493.66494 1.1589 0.00086669 -0.021186 -1.5844E-05 1.1377 0.00085085 747.83953769795 79.788 0.70705 73.613 73.235 73.942 -6.1757 59 42 2 0 0 0 1.267E-08 1 52359 52359 107.56 89.19 1 11779000 13367 8150 9118 9301 15773 15773 1380 -0.06214923345328316 FPIEYHDIWQM 11 Unmodified _FPIEYHDIWQM_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 739.8432006835938 2 739.842287 1477.67002 1.2679 0.00093808 -0.21014 -0.00015547 1.0578 0.00078261 739.8421330797862 96.659 0.43968 90.483 90.253 90.693 -6.1757 74 25 4 0 0 0 2.8439E-06 2 64071 63950;64071 100.09 85.685 1 35044000 13368 8150 9118 9302 15774;15775 15775 -0.049706194826967476 FPIFFPAL 8 Unmodified _FPIFFPAL_ 0 0 0 ENST00000604081.1_1_12:54388338-54389007:-|nuORF ENST00000604081.1_1_12:54388338-54389007:-|nuORF ENST00000604081.1_1_12:54388338-54389007:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7437438964844 2 476.270564 950.526576 0.94271 0.00044898 -4.4201 -0.0021052 -3.4774 -0.0016562 476.2683773754692 50.075 0.25935 49.683 49.532 49.791 -0.3923 16 12 2 0 0 0 8.7369 1 27005 27005 17.087 1.2394 1 1003600 13369 15837 9119 9303 15776 15776 0.04933366259183458 FPIFNPDDMK 10 Unmodified _FPIFNPDDMK_ 0 0 0 REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF REV__ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2640991210938 2 612.291899 1222.56925 0.43444 0.00026601 -0.9634 -0.00058988 -0.52896 -0.00032388 612.2905944922207 70.747 0.20686 70.27 70.161 70.368 -0.47736 21 10 3 0 0 0 0.22769 1 38754 38754 16.149 0 1 1487300 + 13370 17079 9120 9304 15777 15777 -0.03313651465578005 FPIGDKVTF 9 Unmodified _FPIGDKVTF_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000515796.1_1_5:148577795-148580029:+|nuORF;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2789306640625 2 512.279118 1022.54368 0.16484 8.4445E-05 -1.443 -0.00073924 -1.2782 -0.00065479 512.2783010864285 61.838 0.94985 61.35 60.881 61.831 -0.48764 118 44 4 0 0 0 0.015688 4 33698 33509;33600;33698;33804 67.838 21.817 1 8003700 13371 8298 9121 9305 15778;15779;15780;15781 15780 0.03331242074318652 FPIGDKVTF 9 Unmodified _FPIGDKVTF_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000515796.1_1_5:148577795-148580029:+|nuORF;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.279541015625 2 512.279118 1022.54368 0.56505 0.00028946 -0.5221 -0.00026746 0.04295 2.2002E-05 512.2789335066684 61.38 0.71584 61.347 61.037 61.753 -0.032787 61 35 2 0 0 0 0.013118 2 33454 33454;33579 71.708 21.775 1 6705000 13372 8298 9121 9305 15782;15783 15782 0.03331242074318652 FPIGDKVTF 9 Unmodified _FPIGDKVTF_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000515796.1_1_5:148577795-148580029:+|nuORF;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2801513671875 2 512.279118 1022.54368 0.53672 0.00027495 0.32221 0.00016506 0.85894 0.00044002 512.2792630488887 67.558 0.63785 61.382 61.035 61.673 -6.1757 69 35 2 0 0 0 0.025842 2 43944 43944;44084 57.722 11.564 1 58646000 13373 8298 9121 9305 15784;15785 15784 0.03331242074318652 FPIHLTDQL 9 Unmodified _FPIHLTDQL_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000472414.1_1_1:6698189-6705162:-|nuORF nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.294677734375 2 542.295299 1082.57605 0.45913 0.00024899 -0.7587 -0.00041144 -0.29956 -0.00016245 542.2950234176215 67.993 0.33777 67.511 67.299 67.637 -0.48219 40 15 3 0 0 0 0.026094 2 37109 37109;37210 57.471 25.166 1 10134000 13374 370 9122 9306 15786;15787 15786 0.038060294773458736 FPIHNLPYGVF 11 Unmodified _FPIHNLPYGVF_ 0 0 0 ENST00000558767.5_1_15:80445384-80454703:+|nuORF;ENSG00000103876|ENST00000561421|FAH;ENST00000537726.5_1_15:80445384-80454681:+|nuORF ENST00000558767.5_1_15:80445384-80454703:+|nuORF ENST00000558767.5_1_15:80445384-80454703:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.8483276367188 2 652.345323 1302.67609 1.1753 0.00076673 -0.87879 -0.00057327 0.29655 0.00019346 652.3444311687784 96.878 0.22945 90.702 90.557 90.787 -6.1757 21 13 2 0 0 0 0.012451 1 64185 64185 65.235 39.836 1 7404700 13375 2164 9123 9307 15788 15788 0.036862668111098174 FPIHVQTSL 9 Unmodified _FPIHVQTSL_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.290283203125 2 521.290017 1040.56548 0.18354 9.5677E-05 -1.0139 -0.00052853 -0.83035 -0.00043285 521.2892983885706 58.686 0.40867 58.195 57.901 58.31 -0.49079 56 19 4 0 0 0 0.017075 1 31912 31912 66.457 41.057 1 17755000 13376 4425 9124 9308 15789 15789 0.04682046822927077 FPIHVQTSL 9 Unmodified _FPIHVQTSL_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2900390625 2 521.290017 1040.56548 0.63688 0.000332 -0.71695 -0.00037374 -0.080067 -4.1738E-05 521.2894331074704 58.26 0.70985 58.199 57.858 58.568 -0.060722 80 35 4 0 0 0 0.0090948 2 31775 31678;31775 85.272 36.926 1 48779000 13377 4425 9124 9308 15790;15791 15791 0.04682046822927077 FPIHVQTSL 9 Unmodified _FPIHVQTSL_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2904052734375 2 521.290017 1040.56548 1.2918 0.00067341 -0.72238 -0.00037657 0.56945 0.00029685 521.2895336923001 64.604 0.85111 58.428 58.09 58.941 -6.1757 126 46 4 0 0 0 0.00022959 4 41735 41735;41869;42000;42136 149.99 75.572 1 66012000 13378 4425 9124 9308 15792;15793;15794;15795 15792 0.04682046822927077 FPIHVQTSL 9 Unmodified _FPIHVQTSL_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2903442382812 2 521.290017 1040.56548 0.69295 0.00036123 0.81524 0.00042498 1.5082 0.00078621 521.2903097168902 66.502 0.78333 60.327 59.898 60.681 -6.1757 96 44 3 0 0 0 0.010611 2 43270 43137;43270 78.728 32.707 1 30372000 13379 4425 9124 9308 15796;15797 15797 0.04682046822927077 FPIHVQTSL 9 Unmodified _FPIHVQTSL_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 521.290017 1040.56548 0.82117 0.00042807 -0.61466 -0.00032041 0.20651 0.00010765 521.2898154113425 60.276 0.38219 60.276 60.068 60.451 0 -0.0030782 -0.00097035 NaN 78.728 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1578700 13380 4425 9124 9308 0.04682046822927077 FPIIDDRNREL 11 Unmodified _FPIIDDRNREL_ 0 0 0 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2482604980469 3 463.249131 1386.72556 0.6171 0.00028587 -1.1983 -0.00055511 -0.58119 -0.00026924 463.2482777198623 50.37 0.28626 50.37 50.209 50.495 0 27 12 3 0 0 0 0.17129 1 27754 27754 23.34 12.441 1 3741600 13381 3318 9125 9309 15798 15798 0.04766930029268224 FPIIDDRNREL 11 Unmodified _FPIIDDRNREL_ 0 0 0 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2493591308594 3 463.249131 1386.72556 0.4221 0.00019554 -0.88459 -0.00040978 -0.46249 -0.00021425 463.24818888648696 50.832 0.27873 50.419 50.278 50.557 -0.41351 34 13 3 0 0 0 0.14064 1 27371 27371 26.346 14.118 1 5856200 13382 3318 9125 9309 15799 15799 0.04766930029268224 FPIIDDRNREL 11 Unmodified _FPIIDDRNREL_ 0 0 0 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.224853515625 3 463.249131 1386.72556 0.48616 0.00022521 -4.2303 -0.0019597 -3.7441 -0.0017344 463.24577186386864 56.714 0.086681 50.737 50.687 50.773 -5.9769 8 4 2 0 0 0 0.3021 1 36236 36236 6.6235 1.9075 1 10809000 13383 3318 9125 9309 15800 15800 0.04766930029268224 FPIIGGVSAAL 11 Unmodified _FPIIGGVSAAL_ 0 0 0 REV__ENSG00000112992|ENST00000344920|NNT REV__ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8086547851562 2 522.808042 1043.60153 0.45247 0.00023656 -1.4302 -0.00074772 -0.97772 -0.00051116 522.8073728579368 62.787 0.30252 62.301 62.12 62.423 -0.48617 26 14 2 0 0 0 0.15484 1 34278 34278 36.127 3.3413 1 4627900 + 13384 18847 9126 9310 15801 15801 0.08147503999771288 FPIIIHDEPTY 11 Unmodified _FPIIIHDEPTY_ 0 0 0 ENSG00000173517|ENST00000682557|PEAK1 ENSG00000173517|ENST00000682557|PEAK1 ENSG00000173517|ENST00000682557|PEAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8445434570312 2 672.845353 1343.67615 0.21226 0.00014282 -0.0076059 -5.1176E-06 0.20465 0.0001377 672.8452305486942 65.348 0.23023 64.863 64.749 64.979 -0.48428 14 10 2 0 0 0 0.12183 1 35683 35683 39.95 21.803 1 1799500 13385 8332 9127 9311 15802 15802 0.018062220204456025 FPIIRDQIFRY 11 Unmodified _FPIIRDQIFRY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.9421691894531 3 489.94175 1466.80342 0.70678 0.00034628 0.13799 6.7606E-05 0.84477 0.00041389 489.94178398506995 67.294 0.45226 67.312 67.082 67.534 0.018036 93 22 5 0 0 0 0.12646 2 36959 36855;36959 39.413 34.697 1 101180000 13386 2720 9128 9312 15803;15804 15804 0.08868987685309548 FPIIRDQIFRY 11 Unmodified _FPIIRDQIFRY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 734.9104614257812 2 734.408986 1466.80342 0.57356 0.00042123 0.22494 0.0001652 0.7985 0.00058642 734.4091935669264 67.275 0.27403 67.293 67.161 67.435 0.018028 33 13 3 0 0 0 0.10354 1 36923 36923 43.982 37.776 1 4852500 13387 2720 9128 9312 15805 15805 0.08868987685309548 FPIIRDQIFRY 11 Unmodified _FPIIRDQIFRY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 734.409912109375 2 734.408986 1466.80342 0.8985 0.00065986 0.27802 0.00020418 1.1765 0.00086404 734.4092833517979 91.581 0.43069 85.405 85.165 85.596 -6.1757 52 23 3 0 0 0 2.298E-28 2 60598 60469;60598 154.75 135.5 1 22631000 13388 2720 9128 9312 15806;15807 15807 0.08868987685309548 FPIIRDQIFRY 11 Unmodified _FPIIRDQIFRY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2771606445312 3 489.94175 1466.80342 0.96645 0.0004735 0.81143 0.00039755 1.7779 0.00087106 489.9419477915734 91.589 0.69164 85.413 84.994 85.686 -6.1757 131 38 5 0 0 0 0.16638 2 60472 60472;60595 34.79 30.075 1 216470000 13389 2720 9128 9312 15808;15809 15808 0.08868987685309548 FPIIRDQIFRY 11 Unmodified _FPIIRDQIFRY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MSMS AL20221201_MKP_PDAC_01 4 489.9418640136719 3 489.94175 1466.80342 NaN NaN NaN NaN NaN NaN NaN 91.84 1 85.664 85.164 86.164 -6.1757 0 0 0 0.27573 1 60718 60718 34.79 21.272 1 13390 2720 9128 9312 15810 15810 0.08868987685309548 FPIKDLVHL 9 Unmodified _FPIKDLVHL_ 0 0 0 ENSG00000157184|ENST00000371486|CPT2 ENSG00000157184|ENST00000371486|CPT2 ENSG00000157184|ENST00000371486|CPT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2194213867188 3 361.218332 1080.63317 0.81497 0.00029438 0.67865 0.00024514 1.4936 0.00053952 361.2186109085396 93.053 0.15804 86.877 86.823 86.981 -6.1757 13 9 2 0 0 0 0.047196 1 61614 61614 34.932 17.489 1 13153000 13391 6505 9129 9313 15811 15811 0.09607496753687883 FPIKSNAEM 9 Oxidation (M) _FPIKSNAEM(Oxidation (M))_ FPIKSNAEM(1) FPIKSNAEM(89) 0 0 1 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7581787109375 2 526.757692 1051.50083 -0.23573 -0.00012417 0.85918 0.00045258 0.62345 0.00032841 526.7578311556995 26.94 0.45597 26.94 26.699 27.155 0 42 21 3 0 0 0 0.0086722 1 13868 13868 88.954 31.483 1 4270000 13392 5219 9130 9314 15812 15812 959 -0.022858960454186672 FPIKSNAEM 9 Oxidation (M) _FPIKSNAEM(Oxidation (M))_ FPIKSNAEM(1) FPIKSNAEM(96) 0 0 1 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2603149414062 2 526.757692 1051.50083 1.1315 0.00059601 -0.91802 -0.00048358 0.21344 0.00011243 526.7571833889654 30.509 0.31978 27.012 26.833 27.153 -3.497 34 15 3 0 0 0 0.0082548 2 17311 17167;17311 96.367 51.96 1 22528000 13393 5219 9130 9314 15813;15814 15814 959 -0.022858960454186672 FPIKSNAEM 9 Unmodified _FPIKSNAEM_ 0 0 0 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 ENSG00000140297|ENST00000396065|GCNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7603149414062 2 518.760235 1035.50592 0.98961 0.00051337 -0.73926 -0.0003835 0.25035 0.00012987 518.7597811186121 42.447 0.48818 37.763 37.521 38.009 -4.6846 84 32 3 0 0 0 0.0094097 2 25686 25554;25686 82.529 54.042 1 32984000 13394 5219 9130 9315 15815;15816 15816 -0.010415921827870989 FPIKYVNDF 9 Unmodified _FPIKYVNDF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7973022460938 2 571.797675 1141.5808 0.74249 0.00042455 -0.45669 -0.00026113 0.2858 0.00016342 571.7973145419044 64.065 0.40481 63.579 63.374 63.779 -0.48512 58 21 4 0 0 0 0.029718 2 34919 34919;35026 55.503 26.421 1 18609000 13395 2385 9131 9316 15817;15818 15817 0.015669136200813227 FPIKYVNDF 9 Unmodified _FPIKYVNDF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7980346679688 2 571.797675 1141.5808 0.68953 0.00039427 -2.5933 -0.0014828 -1.9038 -0.0010886 571.7976315515689 63.584 0.32859 63.573 63.433 63.762 -0.010532 60 15 6 0 0 0 0.0081887 1 34793 34793 93.166 47.416 1 37670000 13396 2385 9131 9316 15819 15819 0.015669136200813227 FPIKYVNDF 9 Unmodified _FPIKYVNDF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.798583984375 2 571.797675 1141.5808 0.93331 0.00053366 1.4482 0.00082808 2.3815 0.0013617 571.7978622355257 75.481 1.7178 69.305 68.233 69.951 -6.1757 157 92 3 0 0 0 0.0061223 4 49232 49232;49349;49473;49599 114.2 52.844 1 27889000 13397 2385 9131 9316 15820;15821;15822;15823 15820 0.015669136200813227 FPIKYVNDFF 10 Unmodified _FPIKYVNDFF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8336791992188 2 645.331882 1288.64921 0.34356 0.00022171 -0.97852 -0.00063147 -0.63496 -0.00040976 645.8329324749893 83.479 0.21353 83.542 83.439 83.653 0.063179 14 7 3 0 0 0 0.21571 1 46234 46234 25.399 18.676 1 4627500 13398 2385 9132 9317 15824 15824 0.016431581999313494 FPIKYVNDFF 10 Unmodified _FPIKYVNDFF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8338012695312 2 645.331882 1288.64921 1.2023 0.00077587 0.42185 0.00027223 1.6241 0.0010481 645.3319664913545 98.389 0.16006 92.214 92.12 92.28 -6.1757 24 10 3 0 0 0 0.020986 1 65238 65238 96.367 54.527 1 44448000 13399 2385 9132 9317 15825 15825 0.016431581999313494 FPILSSIHF 9 Unmodified _FPILSSIHF_ 0 0 0 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|90 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|90 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3211059570312 2 530.794935 1059.57532 1.1887 0.00063093 -0.42088 -0.0002234 0.76778 0.00040753 530.7944403367927 97.918 0.12949 91.742 91.651 91.781 -6.1757 16 7 3 0 0 0 0.07019 1 64879 64879 44.407 2.3125 1 12886000 + 13400 16794 9133 9318 15826 15826 0.04791234828257984 FPILVVCY 8 Carbamidomethyl (C) _FPILVVC(Carbamidomethyl (C))Y_ FPILVVC(1)Y FPILVVC(42)Y 0 1 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7734985351562 2 505.772614 1009.53067 1.5351 0.00077639 -2.4818 -0.0012552 -0.94677 -0.00047885 505.7722259078198 92.25 0.41597 92.28 92.078 92.494 0.030197 38 15 4 0 0 0 0.42709 1 51301 51301 41.817 9.3636 1 4350400 13401 3760 9134 9319 15827 15827 375 0.026290876905932237 FPINCILRY 9 Carbamidomethyl (C) _FPINC(Carbamidomethyl (C))ILRY_ FPINC(1)ILRY FPINC(100)ILRY 0 1 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MSMS AL20221201_MKP_PDAC_01 4 598.3190307617188 2 598.318251 1194.62195 NaN NaN NaN NaN NaN NaN NaN 87.164 1 80.988 80.488 81.488 -6.1757 0 0 0 0.0064238 1 57467 57467 100.37 60.422 1 13402 7819 9135 9320 15828 15828 760 0.03242351387916642 FPINKELAL 9 Unmodified _FPINKELAL_ 0 0 0 ENSG00000054690|ENST00000329153|PLEKHH1;ENST00000561370.5_1_14:68048786-68054020:+|nuORF ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8075561523438 2 522.808042 1043.60153 0.45247 0.00023656 -1.4302 -0.00074772 -0.97772 -0.00051116 522.8073728579368 62.787 0.30252 62.301 62.12 62.423 -0.48617 26 14 2 0 0 0 0.05483 1 34169 34169 43.772 1.9328 1 4627900 13403 764 9136 9321 15829 15829 0.08147503999748551 FPIPAAEVDRL 11 Unmodified _FPIPAAEVDRL_ 0 0 0 ENST00000537399.1_1_19:19312736-19312988:-|nuORF;ENSG00000184162|ENST00000331552|NR2C2AP;ENST00000539693.1_1_19:19312736-19313791:-|nuORF;nc|ENSG00000184162|Q86WQ0-2|NR2C2AP ENST00000537399.1_1_19:19312736-19312988:-|nuORF ENST00000537399.1_1_19:19312736-19312988:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3413696289062 2 614.340238 1226.66592 0.013513 8.3018E-06 0.42433 0.00026069 0.43785 0.00026899 614.3405741361859 69.757 0.33903 69.278 69.109 69.448 -0.47903 31 14 3 0 0 0 0.12819 1 38128 38128 39.213 7.9447 1 1938700 13404 9226 9137 9322 15830 15830 0.06165659085900188 FPIPDLQKY 9 Unmodified _FPIPDLQKY_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8067016601562 2 560.8055 1119.59645 0.82551 0.00046295 0.16111 9.0351E-05 0.98662 0.0005533 560.8056218705343 67.933 0.4957 67.451 67.119 67.615 -0.48219 62 22 4 0 0 0 0.020316 2 37116 37016;37116 69.105 27.149 1 8365200 13405 3478 9138 9323 15831;15832 15832 0.04143200137150416 FPIPDLQKY 9 Unmodified _FPIPDLQKY_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8082275390625 2 560.8055 1119.59645 0.78317 0.0004392 1.5953 0.00089465 2.3785 0.0013339 560.806739605805 67.427 0.5244 67.445 67.123 67.647 0.018028 67 26 3 0 0 0 0.020316 1 36916 36916 69.105 29.155 1 23680000 13406 3478 9138 9323 15833 15833 0.04143200137150416 FPIPDLQKY 9 Unmodified _FPIPDLQKY_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8062133789062 2 560.8055 1119.59645 0.97527 0.00054694 -0.52067 -0.00029199 0.45461 0.00025495 560.8051874033042 75.962 1.3372 69.787 68.995 70.333 -6.1757 107 73 2 0 0 0 0.0084276 6 49795 49200;49363;49508;49672;49795;49910 89.401 47.561 1 34372000 13407 3478 9138 9323 15834;15835;15836;15837;15838;15839 15838 0.04143200137150416 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.482177734375 1 960.482545 959.475269 0.041872 4.0217E-05 2.8531 0.0027404 2.895 0.0027806 960.4834296659689 78.425 0.81561 78.425 78.076 78.892 0 68 37 3 0 0 0 0.03327 5 43646 43455;43553;43646;43744;43809 53.576 32.704 1 1378000 13408 2768 9139 9324 15840;15841;15842;15843;15844 15842 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7450256347656 2 480.744911 959.475269 0.26646 0.0001281 0.54608 0.00026253 0.81254 0.00039063 480.7449646895874 78.56 0.96762 78.56 78.03 78.997 0 84 44 3 0 0 0 0.10925 3 43650 43650;43745;43851 32.117 17.535 1 1553800 13409 2768 9139 9324 15845;15846;15847 15845 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7453918457031 2 480.744911 959.475269 NaN NaN NaN NaN NaN NaN NaN 78.333 1 78.333 77.833 78.833 0 0 0 0 0.11925 1 43533 43533 40.449 21.01 1 13410 2768 9139 9324 15848 15848 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7455139160156 2 480.744911 959.475269 0.47748 0.00022955 0.41812 0.00020101 0.8956 0.00043055 480.7450660791396 78.997 1.2734 78.511 77.942 79.216 -0.48595 179 54 4 0 0 0 0.010712 7 43411 43017;43113;43213;43314;43411;43519;43634 78.445 46.328 1 18166000 13411 2768 9139 9324 15849;15850;15851;15852;15853;15854;15855 15853 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.4826049804688 1 960.482545 959.475269 0.30019 0.00028833 0.37341 0.00035865 0.6736 0.00064698 960.4827409499295 79.032 1.2674 78.546 77.971 79.239 -0.48595 147 53 4 0 0 0 0.0036753 7 43223 43028;43126;43223;43324;43422;43514;43614 123.1 83.139 1 9418500 13412 2768 9139 9324 15856;15857;15858;15859;15860;15861;15862 15858 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7455444335938 2 480.744911 959.475269 0.40793 0.00019611 0.14781 7.1058E-05 0.55574 0.00026717 480.74500006187935 78.432 0.63051 78.484 78.202 78.832 0.052444 43 25 2 0 0 0 0.058206 2 43379 43266;43379 42.968 23.529 1 2267600 13413 2768 9139 9324 15863;15864 15864 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 960.4839477539062 1 960.482545 959.475269 1.0556 0.0010139 0.092679 8.9017E-05 1.1483 0.0011029 960.4823896777347 86.378 1.0446 80.202 79.655 80.699 -6.1757 147 56 3 0 0 0 0.0012811 8 56857 56591;56607;56731;56786;56857;56981;57104;57231 137.59 93.727 1 56002000 13414 2768 9139 9324 15865;15866;15867;15868;15869;15870;15871;15872 15869 -0.006090025055186743 FPIPGEPGF 9 Unmodified _FPIPGEPGF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.745361328125 2 480.744911 959.475269 1.2884 0.00061939 0.16425 7.8962E-05 1.4526 0.00069835 480.7448581861956 86.335 1.259 80.159 79.566 80.825 -6.1757 210 68 4 0 0 0 0.0084562 6 56909 56658;56783;56909;57031;57158;57284 90.836 50.387 1 159870000 13415 2768 9139 9324 15873;15874;15875;15876;15877;15878 15875 -0.006090025055186743 FPIPGEPGFPL 11 Unmodified _FPIPGEPGFPL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.814453125 2 585.813325 1169.6121 0.2439 0.00014288 1.2755 0.0007472 1.5194 0.00089008 585.8140941755908 99.609 0.49031 99.452 99.238 99.728 -0.1575 30 16 3 0 0 0 0.48615 1 54377 54377 17.113 7.039 1 1396200 13416 2768 9140 9325 15879 15879 0.034074866542141535 FPIPGEPGFPL 11 Unmodified _FPIPGEPGFPL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.81640625 2 585.813325 1169.6121 3.887 0.002277 -0.92341 -0.00054095 2.9636 0.0017361 585.8127807729428 99.456 0.4313 99.42 99.181 99.613 -0.036301 38 15 3 0 0 0 0.13889 2 55214 55214;55321 37.974 18.717 1 4937800 13417 2768 9140 9325 15880;15881 15880 0.034074866542141535 FPIPGEPGFPL 11 Unmodified _FPIPGEPGFPL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8155517578125 2 585.813325 1169.6121 1.5735 0.00092175 -0.05612 -3.2876E-05 1.5173 0.00088887 585.8131242462038 100.88 0.26558 94.707 94.584 94.85 -6.1757 38 16 3 0 0 0 0.016068 1 67535 67535 61.357 17.499 1 98774000 13418 2768 9140 9325 15882 15882 0.034074866542141535 FPIPGEPGFPL 11 Unmodified _FPIPGEPGFPL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1170.620971679688 1 1170.61937 1169.6121 1.5344 0.0017962 1.7216 0.0020153 3.256 0.0038115 1170.6215023179784 100.91 0.17946 94.739 94.635 94.815 -6.1757 17 10 2 0 0 0 8.1918E-15 1 67566 67566 131.27 42.314 1 21103000 13419 2768 9140 9325 15883 15883 0.034074866542141535 FPIPGEPGFPL 11 Unmodified _FPIPGEPGFPL_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 585.813325 1169.6121 2.306 0.0013509 1.0344 0.00060595 3.3404 0.0019568 585.8134365515059 94.645 0.15401 94.659 94.568 94.722 0.014252 -0.024201 0.0011895 NaN 61.357 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1051600 13420 2768 9140 9325 0.034074866542141535 FPIPKLDML 9 Unmodified _FPIPKLDML_ 0 0 0 nc|ENSG00000167528|Q96N77-2|ZNF641;nc|ENSG00000167528|Q96N77-3|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641 nc|ENSG00000167528|Q96N77-2|ZNF641 nc|ENSG00000167528|Q96N77-2|ZNF641 MSMS AL20221201_MKP_PDAC_01 4 537.3037109375 2 537.306821 1072.59909 NaN NaN NaN NaN NaN NaN NaN 76.515 1 70.339 69.839 70.839 -6.1757 0 0 0 0.080768 1 50052 50052 48.346 0 1 13421 7625 9141 9326 15884 15884 0.06569332270441919 FPIPLINRL 9 Unmodified _FPIPLINRL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8400268554688 2 541.839677 1081.6648 0.72789 0.0003944 -0.080235 -4.3474E-05 0.64765 0.00035092 541.8396700064371 99.184 0.20415 93.008 92.908 93.113 -6.1757 40 11 5 0 0 0 0.017075 1 65938 65938 74.423 28.402 1 1095400000 13422 8367 9142 9327 15885 15885 0.1272348950765263 FPIPVSQPY 9 Unmodified _FPIPVSQPY_ 0 0 0 REV__ENSG00000166866|ENST00000300119|MYO1A REV__ENSG00000166866|ENST00000300119|MYO1A MSMS AL20221201_MKP_PDAC_01 4 524.2777709960938 2 524.279118 1046.54368 NaN NaN NaN NaN NaN NaN NaN 45.499 1 40.544 40.044 41.044 -4.9549 0 0 0 0.43483 1 27940 27940 18.146 1.0335 1 + 13423 22161 9143 9328 15886 15886 0.022272420743320254 FPIQAKTF 8 Unmodified _FPIQAKTF_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2692260742188 2 476.268553 950.522553 1.037 0.0004939 2.8633 0.0013637 3.9004 0.0018576 476.2700771766007 49.727 0.57526 49.678 49.471 50.046 -0.048824 52 28 2 0 0 0 0.11214 2 26924 26811;26924 96.111 31.875 1 9708400 13424 7383 9144 9329 15887;15888 15888 0.04531276765465009 FPIQAKTF 8 Unmodified _FPIQAKTF_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2691345214844 2 476.268553 950.522553 0.8533 0.0004064 0.53516 0.00025488 1.3885 0.00066128 476.268539700583 55.704 0.56837 49.783 49.507 50.076 -5.9211 45 33 2 0 0 0 0.10045 1 35495 35495 99.799 45.025 1 53404000 13425 7383 9144 9329 15889 15889 0.04531276765465009 FPIRDLDFSEF 11 Unmodified _FPIRDLDFSEF_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF ENSG00000102226|ENST00000377107|USP11 ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.3394165039062 2 693.340435 1384.66632 0.44481 0.0003084 0.40024 0.0002775 0.84505 0.00058591 693.340522362941 83.94 0.4285 83.44 83.217 83.645 -0.49961 35 17 3 0 0 0 0.66175 1 45915 45915 9.544 3.3382 1 900030 13426 2029 9145 9330 15890 15890 -0.010629659849200834 FPIRDLDFSEF 11 Unmodified _FPIRDLDFSEF_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF ENSG00000102226|ENST00000377107|USP11 ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.3414306640625 2 693.340435 1384.66632 0.72377 0.00050182 1.1524 0.00079901 1.8762 0.0013008 693.3411413795288 97.986 0.2401 91.81 91.668 91.908 -6.1757 33 14 3 0 0 0 2.1084E-05 1 64907 64907 92.201 50.245 1 45097000 13427 2029 9145 9330 15891 15891 -0.010629659849200834 FPIRGIQLY 9 Unmodified _FPIRGIQLY_ 0 0 0 nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8211059570312 2 553.821484 1105.62842 0.46497 0.00025751 -1.7639 -0.0009769 -1.2989 -0.00071939 553.8200975427221 69.548 0.3661 69.579 69.46 69.826 0.030914 27 18 2 0 0 0 0.031062 1 38200 38200 54.774 25.692 1 2637900 13428 2165 9146 9331 15892 15892 0.07982612610953765 FPIRYTFEEF 10 Unmodified _FPIRYTFEEF_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 674.8309326171875 2 674.832246 1347.64994 0.4019 0.00027121 -0.56762 -0.00038305 -0.16572 -0.00011183 674.8306996533659 76.277 0.26662 76.325 76.225 76.492 0.047951 12 10 2 0 0 0 0.10874 1 42108 42108 43.982 30.367 1 2548300 13429 7937 9147 9332 15893 15893 -0.009980471510289135 FPISEETIKL 10 Unmodified _FPISEETIKL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000107625|ENST00000373585|DDX50 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.829345703125 2 588.829172 1175.64379 0.51431 0.00030284 0.50235 0.0002958 1.0167 0.00059864 588.8290292218252 67.64 0.49757 67.158 66.914 67.411 -0.48218 52 21 3 0 0 0 0.14688 2 36901 36901;37010 40.239 19.786 1 2452300 13430 7383;2506 9148 9333 15894;15895 15894 0.06299434617471888 FPISRGIPNM 10 Unmodified _FPISRGIPNM_ 0 0 0 nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112;ENST00000535126.1_1_11:64084335-64084494:-|nuORF;ENST00000537918.1_1_11:64084335-64084637:-|nuORF nc|ENSG00000173113|Q9UI30-2|TRMT112 nc|ENSG00000173113|Q9UI30-2|TRMT112 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.7740478515625 2 566.302601 1130.59065 2.1076 0.0011935 -0.056055 -3.1744E-05 2.0515 0.0011618 566.3028061262457 62.783 0.49865 56.607 56.378 56.877 -6.1757 37 24 2 0 0 0 0.20799 1 40551 40551 24.882 12.641 1 8557800 13431 8287 9149 9334 15896 15896 0.030577783538092262 FPITDVLQM 9 Oxidation (M) _FPITDVLQM(Oxidation (M))_ FPITDVLQM(1) FPITDVLQM(51) 0 0 1 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2750244140625 2 540.275718 1078.53688 0.52681 0.00028462 3.0004 0.0016211 3.5272 0.0019057 540.275280863934 73.546 0.59082 73.07 72.804 73.394 -0.47588 75 26 5 0 0 0 0.038285 1 40387 40387 50.855 30.401 1 2063600 13432 2874 9150 9335 15897 15897 499 0.0007556113143891707 FPKAPEFPSY 10 Unmodified _FPKAPEFPSY_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.7948608398438 2 591.795132 1181.57571 0.69481 0.00041119 -1.3625 -0.00080634 -0.66772 -0.00039515 591.794405092385 57.761 0.29873 57.695 57.554 57.852 -0.066036 30 14 3 0 0 0 0.10424 1 31434 31434 45.7 5.7499 1 2786900 13433 1567 9151 9336 15898 15898 -0.00781390242514135 FPKAPEFPSY 10 Unmodified _FPKAPEFPSY_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.794189453125 2 591.795132 1181.57571 1.1112 0.00065758 0.59413 0.00035161 1.7053 0.0010092 591.7950946773328 64.587 0.6361 58.411 58.167 58.803 -6.1757 47 35 2 0 0 0 0.014503 1 41944 41944 80.676 40.726 1 18639000 13434 1567 9151 9336 15899 15899 -0.00781390242514135 FPKAPEFPSY 10 Unmodified _FPKAPEFPSY_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 591.795132 1181.57571 0.30998 0.00018344 0.88938 0.00052633 1.1994 0.00070978 591.7947703536119 58.847 0.30264 58.356 58.232 58.535 -0.49079 -0.040276 0.00041825 NaN 80.676 35 14 4 NaN NaN NaN NaN 0 NaN NaN 0 7326200 13435 1567 9151 9336 -0.00781390242514135 FPKAPEFPSY 10 Unmodified _FPKAPEFPSY_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 591.795132 1181.57571 0.52163 0.0003087 0.20847 0.00012337 0.73009 0.00043207 591.7949992562014 58.482 0.17191 58.422 58.333 58.505 -0.060722 0.025361 -0.00038767 NaN 80.676 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1598500 13436 1567 9151 9336 -0.00781390242514135 FPKAPSDCPSF 11 Carbamidomethyl (C) _FPKAPSDC(Carbamidomethyl (C))PSF_ FPKAPSDC(1)PSF FPKAPSDC(62)PSF 0 1 0 ENST00000564176.5_1_16:31487914-31488894:+|nuORF ENST00000564176.5_1_16:31487914-31488894:+|nuORF ENST00000564176.5_1_16:31487914-31488894:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.7854614257812 2 626.786981 1251.55941 0.76398 0.00047885 1.4456 0.00090606 2.2095 0.0013849 626.7853389557524 83.377 1.2228 77.201 76.79 78.013 -6.1757 145 65 3 0 0 0 0.01584 1 55142 55142 61.602 9.9721 1 34436000 13437 15378 9152 9337 15900 15900 997 -0.05630839470973115 FPKATDKSF 9 Unmodified _FPKATDKSF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000105357|Q7Z406-6|MYH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7752075195312 2 520.7742 1039.53385 NaN NaN NaN NaN NaN NaN NaN 27.902 1 27.856 27.356 28.356 -0.046408 0 0 0 0.090869 1 14391 14391 45.74 17.253 1 13438 2308;1800;4510 9153 9338 15901 15901 0.01566054068939593 FPKAVSVFF 9 Unmodified _FPKAVSVFF_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF;ENSG00000100156|ENST00000681075|SLC16A8 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2941284179688 2 521.292028 1040.5695 1.2972 0.00067623 2.4005 0.0012514 3.6977 0.0019276 521.2930501792362 97.914 0.1658 91.739 91.651 91.817 -6.1757 16 9 2 0 0 0 0.024882 1 64898 64898 58.679 18.721 1 22792000 13439 5345 9154 9339 15902 15902 0.05084136316622789 FPKDEASVY 9 Unmodified _FPKDEASVY_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2559814453125 2 528.25584 1054.49713 0.64631 0.00034142 1.3966 0.00073777 2.0429 0.0010792 528.2564907652712 38.41 0.41454 34.041 33.75 34.164 -4.3689 39 25 2 0 0 0 0.040683 1 22553 22553 49.554 26.406 1 13050000 13440 10088 9155 9340 15903 15903 -0.027942425476112476 FPKDEASVY 9 Unmodified _FPKDEASVY_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MSMS AL20221201_MKP_PDAC_01 4 528.258544921875 2 528.25584 1054.49713 NaN NaN NaN NaN NaN NaN NaN 38.665 1 34.296 33.796 34.796 -4.3689 0 0 0 0.10759 1 22843 22843 41.84 3.8656 1 13441 10088 9155 9340 15904 15904 -0.027942425476112476 FPKDPVYTF 9 Unmodified _FPKDPVYTF_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000576713.6_1_17:79534551-79539120:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3128051757812 2 557.2844 1112.55425 0.46581 0.00025959 1.249 0.00069603 1.7148 0.00095562 557.2848683739218 58.479 0.35453 57.988 57.798 58.153 -0.49079 51 16 4 0 0 0 0.18811 1 31819 31819 12.241 0 1 8258400 13442 9054 9156 9341 15905 15905 0.002472247287414575 FPKDPVYTF 9 Unmodified _FPKDPVYTF_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000576713.6_1_17:79534551-79539120:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.3140869140625 2 557.2844 1112.55425 1.5574 0.00086789 1.1728 0.00065359 2.7302 0.0015215 557.7866060646264 64.095 0.50146 57.919 57.719 58.221 -6.1757 57 26 3 0 0 0 0.18811 1 41477 41477 17.113 3.605 1 15968000 13443 9054 9156 9341 15906 15906 0.002472247287414575 FPKDVTHFL 9 Unmodified _FPKDVTHFL_ 0 0 0 nc|ENSG00000021461|Q9HB55-6|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43 nc|ENSG00000021461|Q9HB55-6|CYP3A43 nc|ENSG00000021461|Q9HB55-6|CYP3A43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7980346679688 2 552.297842 1102.58113 0.40085 0.00022139 -0.36517 -0.00020168 0.035675 1.9703E-05 552.2980395250152 52.562 0.79661 52.562 52.243 53.039 0 44 26 3 0 0 0 0.48152 1 29246 29246 8.5933 0.68312 1 6305100 13444 524 9157 9342 15907 15907 0.033943333399292897 FPKEKDLNVF 10 Unmodified _FPKEKDLNVF_ 0 0 0 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8927307128906 3 412.892284 1235.65502 0.51362 0.00021207 0.043768 1.8071E-05 0.55739 0.00023014 412.89220377741736 48.161 0.48557 47.808 47.615 48.1 -0.35261 49 24 3 0 0 0 0.28721 1 25820 25820 28.234 15.361 1 6111100 13445 2752 9158 9343 15908 15908 0.04662256711594637 FPKEKDLNVF 10 Unmodified _FPKEKDLNVF_ 0 0 0 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 412.892284 1235.65502 0.29298 0.00012097 3.1013 0.0012805 3.3943 0.0014015 413.22841746726044 47.918 0.18394 47.88 47.783 47.967 -0.038643 0.035677 0.0034648 NaN 28.234 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1021800 13446 2752 9158 9343 0.04662256711594637 FPKENHEVF 9 Unmodified _FPKENHEVF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF;ENST00000598548.1_1_19:47502367-47502667:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8580932617188 3 382.857463 1145.55056 -1.0513 -0.0004025 1.2246 0.00046886 0.17332 6.6359E-05 382.8578986123596 32.342 0.72423 32.342 31.72 32.444 0 80 36 3 0 0 0 0.43463 2 16815 16815;16932 15.248 10.533 1 4203600 13447 6681 9159 9344 15909;15910 15909 -0.016394450450889053 FPKENHEVF 9 Unmodified _FPKENHEVF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF;ENST00000598548.1_1_19:47502367-47502667:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.782470703125 2 573.782556 1145.55056 NaN NaN NaN NaN NaN NaN NaN 32.323 1 32.323 31.823 32.823 0 0 0 0 0.6557 1 16877 16877 10.824 1.4408 1 13448 6681 9159 9344 15911 15911 -0.016394450450889053 FPKENHEVF 9 Unmodified _FPKENHEVF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF;ENST00000598548.1_1_19:47502367-47502667:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8580322265625 3 382.857463 1145.55056 1.5733 0.00060234 -0.42005 -0.00016082 1.1532 0.00044152 382.8574998319972 35.98 0.64056 31.787 31.512 32.152 -4.1928 81 39 3 0 0 0 0.46501 1 21048 21048 9.544 1.935 1 12322000 13449 6681 9159 9344 15912 15912 -0.016394450450889053 FPKFPKGLEF 10 Unmodified _FPKFPKGLEF_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8943481445312 3 403.893737 1208.65938 0.0012693 5.1267E-07 0.3864 0.00015606 0.38767 0.00015658 403.8939001110477 53.14 0.60172 53.076 52.742 53.344 -0.063423 50 29 2 0 0 0 0.6606 1 28828 28828 3.8763 1.1411 1 2568700 + 13450 18904 9160 9345 15913 15913 0.0633976592516774 FPKGFELDKI 10 Unmodified _FPKGFELDKI_ 0 0 0 REV__nc|nan|Q8N6V4-2|C10orf53 REV__nc|nan|Q8N6V4-2|C10orf53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.55712890625 3 398.557013 1192.64921 0.12111 4.8271E-05 -0.51122 -0.00020375 -0.3901 -0.00015548 398.8908109623676 48.696 0.18046 48.652 48.573 48.753 -0.04369 14 8 3 0 0 0 0.6067 1 26310 26310 6.6235 0.84002 1 1620100 + 13451 30050 9161 9346 15914 15914 0.06059158199923331 FPKGFSVEL 9 Unmodified _FPKGFSVEL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2793579101562 2 512.279118 1022.54368 0.34622 0.00017736 -0.028588 -1.4645E-05 0.31764 0.00016272 512.2790166270047 68.43 0.74957 67.949 67.559 68.309 -0.48071 86 34 3 0 0 0 0.013041 3 37357 37253;37357;37468 71.922 71.922 1 5394100 13452 3206 9162 9347 15915;15916;15917 15916 0.03331242074330021 FPKGFSVEL 9 Unmodified _FPKGFSVEL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2794189453125 2 512.279118 1022.54368 0.63123 0.00032336 0.62156 0.00031841 1.2528 0.00064178 512.2793106660114 68.001 0.95414 68.026 67.462 68.416 0.025146 131 47 4 0 0 0 0.013041 4 37363 37154;37257;37363;37551 71.922 36.232 1 19275000 13453 3206 9162 9347 15918;15919;15920;15921 15920 0.03331242074330021 FPKGFSVEL 9 Unmodified _FPKGFSVEL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2792358398438 2 512.279118 1022.54368 0.70659 0.00036197 0.10218 5.2346E-05 0.80877 0.00041432 512.2791842539107 81.665 2.2175 75.49 74.551 76.768 -6.1757 226 125 2 0 0 0 0.0086209 10 53965 52967;53085;53207;53443;53570;53706;53831;53965;54099;54240 89.401 75.761 1 33278000 13454 3206 9162 9347 15922;15923;15924;15925;15926;15927;15928;15929;15930;15931 15929 0.03331242074330021 FPKHFVEY 8 Unmodified _FPKHFVEY_ 0 0 0 nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;nc|ENSG00000174227|Q5H8A4-6|PIGG;nc|ENSG00000174227|Q5H8A4-5|PIGG nc|ENSG00000174227|Q5H8A4-2|PIGG nc|ENSG00000174227|Q5H8A4-2|PIGG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7706298828125 2 533.77146 1065.52837 NaN NaN NaN NaN NaN NaN NaN 38.426 1 38.139 37.639 38.639 -0.28687 0 0 0 0.7268 1 20227 20227 26.884 3.7352 1 13455 8402 9163 9348 15932 15932 -0.0017762472284630348 FPKHQDLQF 9 Unmodified _FPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2015991210938 3 387.201341 1158.58219 0.018163 7.0326E-06 -0.24778 -9.5939E-05 -0.22961 -8.8907E-05 387.20106727903715 38.61 0.36463 38.323 38.071 38.435 -0.28687 32 17 3 0 0 0 0.46162 1 20283 20283 9.544 1.935 1 5664200 13456 10196 9164 9349 15933 15933 0.009245477088370535 FPKHQDLQF 9 Unmodified _FPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2998046875 2 580.298373 1158.58219 0.021008 1.2191E-05 2.1635 0.0012555 2.1845 0.0012677 580.2995854085266 38.5 0.18927 38.214 38.114 38.303 -0.28687 12 8 2 0 0 0 0.19361 1 20286 20286 13.906 6.6168 1 1237800 13457 10196 9164 9349 15934 15934 0.009245477088370535 FPKHQDLQF 9 Unmodified _FPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2987060546875 2 580.298373 1158.58219 1.0042 0.00058275 0.39581 0.00022969 1.4 0.00081244 580.2987420866065 42.736 0.50768 38.052 37.845 38.353 -4.6846 78 32 3 0 0 0 0.0094802 1 25918 25918 99.755 43.578 1 23165000 13458 10196 9164 9349 15935 15935 0.009245477088370535 FPKHQDLQF 9 Unmodified _FPKHQDLQF_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 387.201341 1158.58219 -0.024332 -9.4213E-06 1.1036 0.00042732 1.0793 0.0004179 387.20201244175 38.155 0.104 38.172 38.11 38.214 0.01704 -0.055124 0.00066451 NaN 9.544 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 685840 13459 10196 9164 9349 0.009245477088370535 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2389831542969 3 432.239573 1293.69689 -0.0045883 -1.9833E-06 0.034774 1.5031E-05 0.030186 1.3048E-05 432.2395793677567 54.583 0.33251 54.117 53.948 54.281 -0.46664 63 16 5 0 0 0 0.33469 2 29531 29531;29639 24.957 17.48 1 52236000 13460 1599 9165 9350 15936;15937 15936 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.8552856445312 2 647.855721 1293.69689 -0.097581 -6.3218E-05 0.04704 3.0475E-05 -0.05054 -3.2743E-05 647.8556802286969 54.613 0.27391 54.146 53.968 54.242 -0.46664 41 13 4 0 0 0 0.0128 1 29560 29560 68.76 36.722 1 11758000 13461 1599 9165 9350 15938 15938 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2397155761719 3 432.239573 1293.69689 0.15762 6.8131E-05 0.5703 0.00024651 0.72793 0.00031464 432.2398171465553 54.257 0.29694 54.19 54.041 54.338 -0.06694 50 14 5 0 0 0 0.21145 2 29422 29422;29520 31.462 21.918 1 23046000 13462 1599 9165 9350 15939;15940 15939 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.8558349609375 2 647.855721 1293.69689 0.22917 0.00014847 0.68658 0.00044481 0.91575 0.00059327 647.8561286843047 54.28 0.27706 54.213 54.041 54.319 -0.066936 30 13 3 0 0 0 0.17638 1 29433 29433 34.222 23.422 1 3830700 13463 1599 9165 9350 15941 15941 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5744323730469 3 432.239573 1293.69689 0.77444 0.00033474 -0.15394 -6.6537E-05 0.6205 0.00026821 432.23954518695945 81.966 1.6727 75.79 75.21 76.883 -6.1757 254 93 4 0 0 0 0.21145 8 54232 53563;53695;53829;53962;54095;54232;54362;54514 31.462 19.83 1 49683000 13464 1599 9165 9350 15942;15943;15944;15945;15946;15947;15948;15949 15947 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8560791015625 2 647.855721 1293.69689 0.59067 0.00038267 -0.55381 -0.00035879 0.036854 2.3876E-05 647.8555236105866 81.996 1.3355 75.821 75.308 76.643 -6.1757 153 75 3 0 0 0 0.00077302 5 53708 53577;53708;53833;53967;54352 101.54 69.506 1 21942000 13465 1599 9165 9350 15950;15951;15952;15953;15954 15951 0.06178812400139577 FPKKISELDAF 11 Unmodified _FPKKISELDAF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000561059.5_1_14:24606216-24606483:+|nuORF ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 432.239573 1293.69689 0.66355 0.00028681 -0.9094 -0.00039308 -0.24586 -0.00010627 432.573775523751 54.064 0.18844 54.064 53.923 54.111 0 -0.059365 -0.0013368 NaN 31.462 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1209000 13466 1599 9165 9350 0.06178812400139577 FPKKKDVEF 9 Unmodified _FPKKKDVEF_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8818359375 3 379.881608 1136.623 1.0062 0.00038222 -0.21847 -8.2994E-05 0.78769 0.00029923 379.88150061460647 26.665 0.60819 23.714 23.481 24.089 -2.9511 71 31 3 0 0 0 0.12357 2 14760 14640;14760 30.703 15.165 1 25440000 13467 2577 9166 9351 15955;15956 15956 0.06014889028483594 FPKNIFAEL 9 Unmodified _FPKNIFAEL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3009643554688 2 539.800217 1077.58588 0.32118 0.00017338 -0.44128 -0.0002382 -0.12009 -6.4826E-05 539.8005648889191 78.293 0.35542 78.346 78.177 78.532 0.052444 40 14 4 0 0 0 0.07916 1 43203 43203 37.974 17.52 1 10802000 13468 8296;16388 9167 9352 15957 15957 0.05019217482708882 FPKNIFAEL 9 Unmodified _FPKNIFAEL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8008422851562 2 539.800217 1077.58588 1.2088 0.0006525 -0.30232 -0.00016319 0.90646 0.00048931 539.7999586648491 96.635 0.4042 90.459 90.27 90.674 -6.1757 54 23 3 0 0 0 0.014417 2 64091 63970;64091 69.105 23.084 1 35578000 13469 8296;16388 9167 9352 15958;15959 15959 0.05019217482708882 FPKNIFAEL 9 Unmodified _FPKNIFAEL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.800217 1077.58588 0.067992 3.6702E-05 2.0853 0.0011257 2.1533 0.0011624 539.8010796912292 78.867 0.22023 78.381 78.265 78.485 -0.48596 0.017685 0.0021834 NaN 37.974 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 665940 13470 8296;16388 9167 9352 0.05019217482708882 FPKPVTALEY 10 Unmodified _FPKPVTALEY_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.81884765625 2 582.818607 1163.62266 -0.2876 -0.00016762 1.1318 0.00065966 0.84424 0.00049204 582.8193575351725 56.758 0.38393 56.273 56.095 56.479 -0.48554 34 19 2 0 0 0 0.051223 2 30889 30776;30889 57.722 32.323 1 10139000 13471 1007 9168 9353 15960;15961 15961 0.047394693086062034 FPKPVTALEY 10 Unmodified _FPKPVTALEY_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8194580078125 2 582.818607 1163.62266 1.6811 0.00097979 -0.025629 -1.4937E-05 1.6555 0.00096486 582.8184813718794 62.831 0.6211 56.655 56.343 56.964 -6.1757 51 31 2 0 0 0 0.018732 2 40507 40507;40640 76.825 52.804 1 24060000 13472 1007 9168 9353 15962;15963 15962 0.047394693086062034 FPKRQFSW 8 Unmodified _FPKRQFSW_ 0 0 0 ENST00000573379.1_1_16:11036697-11036856:+|nuORF ENST00000573379.1_1_16:11036697-11036856:+|nuORF ENST00000573379.1_1_16:11036697-11036856:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8629150390625 3 365.86266 1094.56615 NaN NaN NaN NaN NaN NaN NaN 34.47 1 34.497 33.997 34.997 0.027401 0 0 0 0.95254 1 18174 18174 10.074 2.7847 1 13473 15499 9169 9354 15964 15964 0.022648862626056143 FPKVGTHKRY 10 Unmodified _FPKVGTHKRY_ 0 0 0 REV__ENSG00000118922|ENST00000703967|KLF12 REV__ENSG00000118922|ENST00000703967|KLF12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8614807128906 3 411.568135 1231.68258 0.41472 0.00017069 0.13266 5.4598E-05 0.54738 0.00022528 411.5682441803775 49.069 0.28253 48.697 48.558 48.84 -0.37171 35 13 3 0 0 0 0.23946 1 26327 26327 3.5871 0 1 4956500 + 13474 19173 9170 9355 15965 15965 0.07600204762525209 FPKVLSDDM 9 Oxidation (M) _FPKVLSDDM(Oxidation (M))_ FPKVLSDDM(1) FPKVLSDDM(110) 0 0 1 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2555541992188 2 534.257525 1066.5005 -0.044488 -2.3768E-05 -2.0266 -0.0010827 -2.0711 -0.0011065 534.2567356666968 41.818 0.4606 41.818 41.589 42.049 0 58 23 3 0 0 0 0.0061223 2 22529 22529;22640 114.2 83.565 1 16220000 13475 394;14924 9171 9356 15966;15967 15966 46 -0.030093157652800073 FPKVLSDDM 9 Oxidation (M) _FPKVLSDDM(Oxidation (M))_ FPKVLSDDM(1) FPKVLSDDM(110) 0 0 1 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2582397460938 2 534.257525 1066.5005 1.0164 0.00054301 -1.2938 -0.00069124 -0.27745 -0.00014823 534.2570194909057 47.91 0.48699 42.676 42.42 42.907 -5.2339 66 29 3 0 0 0 0.0061223 2 29829 29689;29829 114.2 83.565 1 17808000 13476 394;14924 9171 9356 15968;15969 15969 46 -0.030093157652800073 FPKVLSDDM 9 Unmodified _FPKVLSDDM_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32;nc|ENSG00000008517|P24001-7|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32;ENST00000532086.1_1_16:3115767-3117689:+|nuORF ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2601928710938 2 526.260068 1050.50558 0.95566 0.00050293 1.6422 0.00086422 2.5978 0.0013671 526.2609312085305 59.454 0.42605 53.339 53.131 53.557 -6.1147 46 22 3 0 0 0 0.010301 2 38271 38143;38271 79.596 41.622 1 24165000 13477 394;14924 9171 9357 15970;15971 15971 -0.01765011902648439 FPKWCQNR 8 Unmodified _FPKWCQNR_ 0 0 0 REV__ENSG00000196646|ENST00000343979|ZNF136 REV__ENSG00000196646|ENST00000343979|ZNF136 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.6832580566406 3 360.179883 1077.51782 1.5136 0.00054515 -2.7967 -0.0010073 -1.2831 -0.00046215 360.1790099199024 18.882 0.2558 16.26 16.126 16.381 -2.6215 23 15 2 0 0 0 8.7369 1 9900 9900 1.6526 0 1 2693000 + 13478 23855 9172 9358 15972 15972 -0.017839306489349838 FPLAEKVKAF 10 Unmodified _FPLAEKVKAF_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.893310546875 3 383.893737 1148.65938 -0.16969 -6.5144E-05 0.40947 0.00015719 0.23977 9.2048E-05 383.8939863914983 51.254 0.27816 51.2 51.047 51.325 -0.053871 37 13 4 0 0 0 0.34306 1 27704 27704 24.957 9.2185 1 6003600 13479 1518 9173 9359 15973 15973 0.09099765925179781 FPLAEKVKAF 10 Unmodified _FPLAEKVKAF_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MSMS AL20221201_MKP_PDAC_01 4 383.8937072753906 3 383.893737 1148.65938 NaN NaN NaN NaN NaN NaN NaN 56.952 1 50.975 50.475 51.475 -5.9769 0 0 0 0.52664 1 36387 36387 24.957 9.2185 1 13480 1518 9173 9359 15974 15974 0.09099765925179781 FPLALPGML 9 Oxidation (M) _FPLALPGM(Oxidation (M))L_ FPLALPGM(1)L FPLALPGM(67)L 0 0 1 ENSG00000121057|ENST00000337714|AKAP1;nc|ENSG00000121057|Q92667-2|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7731018066406 2 487.772614 973.530675 1.0365 0.00050558 0.076525 3.7327E-05 1.113 0.0005429 487.7728061207465 99.988 0.26285 93.812 93.715 93.978 -6.1757 27 17 2 0 0 0 0.016115 1 66735 66735 67.413 20.492 1 14070000 13481 3562 9174 9360 15975 15975 630 0.04285087690595901 FPLAQKEQL 9 Unmodified _FPLAQKEQL_ 0 0 0 REV__ENST00000499137.6_1_12:93960704-93965378:-|nuORF REV__ENST00000499137.6_1_12:93960704-93965378:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8048095703125 2 537.303124 1072.5917 0.71811 0.00038584 1.3444 0.00072235 2.0625 0.0011082 537.8049121613634 75.501 1.2538 69.326 68.679 69.932 -6.1757 137 67 3 0 0 0 0.25681 1 49676 49676 19.257 3.4098 1 28195000 + 13482 28001 9175 9361 15976 15976 0.058303159943761784 FPLCRTPQF 9 Carbamidomethyl (C) _FPLC(Carbamidomethyl (C))RTPQF_ FPLC(1)RTPQF FPLC(130)RTPQF 0 1 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.7969360351562 2 583.294776 1164.575 0.085637 4.9952E-05 -0.32121 -0.00018736 -0.23557 -0.00013741 583.2946206842495 55.875 0.83747 55.806 55.317 56.155 -0.068737 105 43 3 0 0 0 0.0017364 4 30206 30206;30303;30405;30514 134.3 85.95 1 24428000 13483 6383 9176 9362 15977;15978;15979;15980 15977 630 -0.000705081632531801 FPLCRTPQF 9 Carbamidomethyl (C) _FPLC(Carbamidomethyl (C))RTPQF_ FPLC(1)RTPQF FPLC(110)RTPQF 0 1 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2959594726562 2 583.294776 1164.575 0.77742 0.00045346 -1.0439 -0.00060892 -0.26651 -0.00015546 583.2946606438408 61.791 0.92628 55.615 55.248 56.174 -6.1757 118 50 4 0 0 0 0.0061223 4 39672 39672;39804;39935;40088 114.2 74.244 1 102370000 13484 6383 9176 9362 15981;15982;15983;15984 15981 630 -0.000705081632531801 FPLDADKILL 10 Unmodified _FPLDADKILL_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8355102539062 2 572.834257 1143.65396 0.67221 0.00038507 0.19351 0.00011085 0.86572 0.00049591 572.8343074859482 83.917 0.7474 83.418 83.05 83.797 -0.49961 79 31 3 0 0 0 0.27276 3 45896 45796;45896;45997 29.082 10.516 1 2571500 13485 1335 9177 9363 15985;15986;15987 15986 0.08788042342712288 FPLDADKILL 10 Unmodified _FPLDADKILL_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8362426757812 2 572.834257 1143.65396 1.3485 0.00077244 0.26905 0.00015412 1.6175 0.00092657 572.8342935015479 98.021 0.3737 91.845 91.627 92 -6.1757 53 23 3 0 0 0 0.043225 1 64896 64896 61.602 21.652 1 38385000 13486 1335 9177 9363 15988 15988 0.08788042342712288 FPLDGHVL 8 Unmodified _FPLDGHVL_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX nc|ENSG00000159840|Q15942-2|ZYX nc|ENSG00000159840|Q15942-2|ZYX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2450866699219 2 449.245078 896.475603 0.19858 8.9209E-05 0.23597 0.00010601 0.43455 0.00019522 449.24527404872856 61.853 0.73846 61.365 60.965 61.704 -0.48764 48 34 2 0 0 0 0.44122 2 33671 33565;33671 40.449 19.577 1 1104500 13487 6677 9178 9364 15989;15990 15990 0.023224172143386568 FPLDKAVAY 9 Unmodified _FPLDKAVAY_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2810668945312 2 512.279118 1022.54368 0.093414 4.7854E-05 -0.067049 -3.4348E-05 0.026365 1.3506E-05 512.2794917869522 51.915 0.52067 51.915 51.475 51.996 0 35 23 3 0 0 0 0.14 1 28624 28624 29.082 3.6823 1 3192100 13488 5717 9179 9365 15991 15991 0.03331242074318652 FPLDKAVAY 9 Unmodified _FPLDKAVAY_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2802124023438 2 512.279118 1022.54368 0.39201 0.00020082 0.064037 3.2805E-05 0.45605 0.00023363 512.2790937650885 52.438 0.68996 52.004 51.688 52.378 -0.43367 84 34 4 0 0 0 0.037253 3 28223 28223;28333;28439 51.415 20.779 1 16489000 13489 5717 9179 9365 15992;15993;15994 15992 0.03331242074318652 FPLDKAVAY 9 Unmodified _FPLDKAVAY_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.27783203125 2 512.279118 1022.54368 0.69291 0.00035497 -1.0751 -0.00055076 -0.38221 -0.0001958 512.2783255822804 52.083 0.67569 52.024 51.592 52.267 -0.058918 43 32 2 0 0 0 0.20428 1 28243 28243 22.736 4.5899 1 1568400 13490 5717 9179 9365 15995 15995 0.03331242074318652 FPLDKAVAY 9 Unmodified _FPLDKAVAY_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1 nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2794189453125 2 512.279118 1022.54368 1.3102 0.00067117 -0.3097 -0.00015865 1.0005 0.00051251 512.2788598962937 58.788 0.65894 52.714 52.371 53.03 -6.0745 85 36 3 0 0 0 0.037253 2 37838 37703;37838 51.415 24.532 1 110670000 13491 5717 9179 9365 15996;15997 15997 0.03331242074318652 FPLDKSLLL 9 Unmodified _FPLDKSLLL_ 0 0 0 ENSG00000081177|ENST00000685843|EXD2;nc|ENSG00000081177|Q9NVH0-2|EXD2;ENST00000492815.5_1_14:69676187-69701514:+|nuORF ENSG00000081177|ENST00000685843|EXD2 ENSG00000081177|ENST00000685843|EXD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3187255859375 2 523.318243 1044.62193 1.3923 0.00072859 -0.26573 -0.00013906 1.1265 0.00058953 523.3180506814707 97.187 0.69193 91.011 90.693 91.384 -6.1757 104 39 3 0 0 0 0.040683 1 64252 64252 49.554 10.94 1 43829000 13492 1319 9180 9366 15998 15998 0.10140674659578508 FPLDKVHAKM 10 Unmodified _FPLDKVHAKM_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MSMS AL20221201_MKP_PDAC_01 4 395.8871154785156 3 395.886476 1184.6376 NaN NaN NaN NaN NaN NaN NaN 39.021 1 34.57 34.07 35.07 -4.4509 0 0 0 0.50527 1 23101 23101 25.997 6.7404 1 13493 9843 9181 9367 15999 15999 0.05266637904946947 FPLDLDVKM 9 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ FPLDLDVKM(1) FPLDLDVKM(70) 0 0 1 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2833862304688 2 547.283543 1092.55253 0.19546 0.00010697 -0.91954 -0.00050325 -0.72408 -0.00039628 547.2829709462616 62.16 0.67051 62.16 61.62 62.29 0 102 31 5 0 0 0 0.013609 4 34565 34439;34464;34565;34678 70.332 36.23 1 31327000 13494 9647 9182 9368 16000;16001;16002;16003 16002 1564 0.009958476484825951 FPLDLDVKM 9 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ FPLDLDVKM(1) FPLDLDVKM(64) 0 0 1 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2840576171875 2 547.283543 1092.55253 0.29969 0.00016402 -0.39674 -0.00021713 -0.097048 -5.3113E-05 547.2832436519791 62.173 0.52019 62.14 61.828 62.348 -0.032787 70 26 4 0 0 0 0.01958 3 33939 33837;33939;34062 63.961 33.324 1 39926000 13495 9647 9182 9368 16004;16005;16006 16005 1564 0.009958476484825951 FPLDLDVKM 9 Oxidation (M) _FPLDLDVKM(Oxidation (M))_ FPLDLDVKM(1) FPLDLDVKM(56) 0 0 1 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.283935546875 2 547.283543 1092.55253 0.56518 0.00030931 -1.4061 -0.00076954 -0.84093 -0.00046023 547.2830470881919 68.145 0.68881 61.969 61.499 62.187 -6.1757 88 40 3 0 0 0 0.029718 1 44369 44369 55.503 30.103 1 179980000 13496 9647 9182 9368 16007 16007 1564 0.009958476484825951 FPLDLDVKM 9 Unmodified _FPLDLDVKM_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2866821289062 2 539.286085 1076.55762 -0.67687 -0.00036503 0.48639 0.00026231 -0.19048 -0.00010272 539.286480379811 78.22 1.3187 77.734 77.097 78.416 -0.48595 185 71 4 0 0 0 0.029718 4 43004 42793;42895;43004;43100 55.503 35.258 1 15314000 13497 9647 9182 9369 16008;16009;16010;16011 16010 0.022401515111141634 FPLDLDVKM 9 Unmodified _FPLDLDVKM_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2866821289062 2 539.286085 1076.55762 0.1766 9.5238E-05 3.7717 0.002034 3.9483 0.0021293 539.2886281853554 77.695 1.4244 77.747 76.802 78.226 0.052452 115 59 3 0 0 0 0.033587 2 42792 42792;42998 53.404 28.005 1 16716000 13498 9647 9182 9369 16012;16013 16012 0.022401515111141634 FPLDLDVKM 9 Unmodified _FPLDLDVKM_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000484560.1_1_3:146234424-146234930:-|nuORF;nc|ENSG00000114698|Q9NRQ2-2|PLSCR4;ENSG00000114698|ENST00000354952|PLSCR4 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2863159179688 2 539.286085 1076.55762 0.82438 0.00044458 -0.22676 -0.00012229 0.59762 0.00032229 539.2860758360941 91.126 2.0905 84.95 84.025 86.115 -6.1757 363 122 4 0 0 0 0.011291 10 60146 59888;60016;60146;60278;60398;60524;60647;60774;60879;60929 76.825 51.425 1 394680000 13499 9647 9182 9369 16014;16015;16016;16017;16018;16019;16020;16021;16022;16023 16016 0.022401515111141634 FPLDLDVRV 9 Unmodified _FPLDLDVRV_ 0 0 0 ENSG00000187838|ENST00000619711|PLSCR3;ENST00000571541.5_1_17:7293706-7296729:-|nuORF ENSG00000187838|ENST00000619711|PLSCR3 ENSG00000187838|ENST00000619711|PLSCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.30078125 2 537.303124 1072.5917 NaN NaN NaN NaN NaN NaN NaN 79.436 1 78.947 78.447 79.447 -0.48932 0 0 0 0.63508 1 43508 43508 11.495 4.2055 1 13500 9601 9183 9370 16024 16024 0.058303159943761784 FPLDLDVRV 9 Unmodified _FPLDLDVRV_ 0 0 0 ENSG00000187838|ENST00000619711|PLSCR3;ENST00000571541.5_1_17:7293706-7296729:-|nuORF ENSG00000187838|ENST00000619711|PLSCR3 ENSG00000187838|ENST00000619711|PLSCR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3046264648438 2 537.303124 1072.5917 0.71811 0.00038584 1.3444 0.00072235 2.0625 0.0011082 537.8049121613634 75.501 1.2538 69.326 68.679 69.932 -6.1757 137 67 3 0 0 0 0.12424 1 49168 49168 30.637 6.616 1 28195000 13501 9601 9183 9370 16025 16025 0.058303159943761784 FPLDNVDIGF 10 Unmodified _FPLDNVDIGF_ 0 0 0 nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6;nc|ENSG00000116675|O75061-3|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 MSMS AL20221201_MKP_PDAC_01 4 568.7846069335938 2 568.784764 1135.55498 NaN NaN NaN NaN NaN NaN NaN 99.931 1 93.756 93.256 94.256 -6.1757 0 0 0 0.55039 1 66705 66705 34.402 19.563 1 13502 3238 9184 9371 16026 16026 -0.007379806221706531 FPLDPQLAKM 10 Oxidation (M) _FPLDPQLAKM(Oxidation (M))_ FPLDPQLAKM(1) FPLDPQLAKM(67) 0 0 1 ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541777-24541846:-|nuORF;ENST00000503562.1_1_4:24541566-24543501:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3084716796875 2 588.310092 1174.60563 0.41977 0.00024695 -2.1051 -0.0012384 -1.6853 -0.00099149 588.3091331002768 53.571 0.63966 53.119 52.922 53.562 -0.45173 53 31 3 0 0 0 0.031932 1 28974 28974 67.081 32.149 1 2677400 13503 2658 9185 9372 16027 16027 460 0.025312254311529614 FPLDPQLAKM 10 Oxidation (M) _FPLDPQLAKM(Oxidation (M))_ FPLDPQLAKM(1) FPLDPQLAKM(61) 0 0 1 ENSG00000109606|ENST00000336812|DHX15;ENST00000503562.1_1_4:24541777-24541846:-|nuORF;ENST00000503562.1_1_4:24541566-24543501:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20221201_MKP_PDAC_01 4 588.3103637695312 2 588.310092 1174.60563 NaN NaN NaN NaN NaN NaN NaN 59.42 1 53.306 52.806 53.806 -6.1147 0 0 0 0.035368 1 38155 38155 61.09 32.008 1 13504 2658 9185 9372 16028 16028 460 0.025312254311529614 FPLDSHVF 8 Unmodified _FPLDSHVF_ 0 0 0 nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 nc|ENSG00000159263|Q14190-2|SIM2 nc|ENSG00000159263|Q14190-2|SIM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2426452636719 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 63.729 1 63.242 62.742 63.742 -0.48617 0 0 0 0.93066 1 34759 34759 14.582 0 1 13505 6642 9186 9373 16029 16029 -0.011298866482775338 FPLDSTGSEL 10 Unmodified _FPLDSTGSEL_ 0 0 0 ENSG00000103353|ENST00000395878|UBFD1 ENSG00000103353|ENST00000395878|UBFD1 ENSG00000103353|ENST00000395878|UBFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7571411132812 2 533.258579 1064.50261 0.21843 0.00011648 -1.6625 -0.00088653 -1.444 -0.00077005 533.7587705465813 62.225 0.54354 62.225 61.821 62.365 0 59 26 3 0 0 0 0.31022 1 34640 34640 26.884 7.6267 1 7905900 13506 2131 9187 9374 16030 16030 -0.02706563755782554 FPLDSTGSEL 10 Unmodified _FPLDSTGSEL_ 0 0 0 ENSG00000103353|ENST00000395878|UBFD1 ENSG00000103353|ENST00000395878|UBFD1 ENSG00000103353|ENST00000395878|UBFD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2601928710938 2 533.258579 1064.50261 NaN NaN NaN NaN NaN NaN NaN 62.368 1 62.368 61.868 62.868 0 0 0 0 0.71851 1 34784 34784 15.847 0 1 13507 2131 9187 9374 16031 16031 -0.02706563755782554 FPLDVGSIVGY 11 Unmodified _FPLDVGSIVGY_ 0 0 0 ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.80859375 2 583.808239 1165.60193 0.32125 0.00018755 0.951 0.0005552 1.2722 0.00074275 583.8088211610285 93.688 0.71696 93.23 92.862 93.579 -0.4574 94 31 4 0 0 0 0.15484 3 51266 51082;51172;51266 36.127 25.303 1 2031600 13508 1407 9188 9375 16032;16033;16034 16034 0.025748789289764318 FPLDVGSIVGY 11 Unmodified _FPLDVGSIVGY_ 0 0 0 ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8092651367188 2 583.808239 1165.60193 2.2039 0.0012866 0.019681 1.149E-05 2.2236 0.0012981 583.8082131085323 93.313 0.97212 93.336 92.847 93.819 0.022987 116 38 4 0 0 0 0.0097967 3 51811 51705;51811;51914 68.081 48.824 1 34603000 13509 1407 9188 9375 16035;16036;16037 16036 0.025748789289764318 FPLDVGSIVGY 11 Unmodified _FPLDVGSIVGY_ 0 0 0 ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP ENSG00000085377|ENST00000652536|PREP MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8079833984375 2 583.808239 1165.60193 0.33184 0.00019373 0.47378 0.0002766 0.80562 0.00047033 583.8083447549193 99.837 0.39024 93.661 93.508 93.898 -6.1757 79 27 4 0 0 0 0.018566 2 66700 66526;66700 58.679 43.841 1 425070000 13510 1407 9188 9375 16038;16039 16039 0.025748789289764318 FPLEAITAF 9 Unmodified _FPLEAITAF_ 0 0 0 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7728576660156 2 504.773668 1007.53278 -0.064328 -3.2471E-05 0.24894 0.00012566 0.18461 9.3187E-05 504.7736876898851 96.126 0.38947 95.821 95.639 96.028 -0.30473 49 20 3 0 0 0 0.49272 1 52559 52559 7.9102 2.1497 1 1018500 13511 8015 9189 9376 16040 16040 0.029318397000452023 FPLEAITAF 9 Unmodified _FPLEAITAF_ 0 0 0 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.774169921875 2 504.773668 1007.53278 1.1368 0.00057385 -0.33203 -0.0001676 0.80482 0.00040625 504.77330144169235 100.41 0.19019 94.234 94.122 94.312 -6.1757 27 11 3 0 0 0 0.03327 1 67106 67106 53.576 26.692 1 62605000 13512 8015 9189 9376 16041 16041 0.029318397000452023 FPLEAVREDAF 11 Unmodified _FPLEAVREDAF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.3267822265625 2 647.327328 1292.6401 -0.028388 -1.8376E-05 -0.74931 -0.00048505 -0.77769 -0.00050342 647.326866142322 65.794 0.48013 65.794 65.55 66.03 0 60 23 3 0 0 0 0.02135 2 36720 36618;36720 57.108 25.569 1 7785900 13513 3859 9190 9377 16042;16043 16043 0.005487648436201198 FPLEAVREDAF 11 Unmodified _FPLEAVREDAF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.3272705078125 2 647.327328 1292.6401 0.013379 8.6609E-06 -0.87467 -0.0005662 -0.86129 -0.00055754 647.326812064563 66.311 0.4598 65.828 65.63 66.09 -0.48324 63 24 3 0 0 0 0.0025724 2 36142 36142;36248 79.427 31.833 1 7582000 13514 3859 9190 9377 16044;16045 16044 0.005487648436201198 FPLEAVREDAF 11 Unmodified _FPLEAVREDAF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3276977539062 2 647.327328 1292.6401 0.14372 9.3031E-05 0.25549 0.00016538 0.3992 0.00025842 647.3275373833332 77.064 0.59637 70.888 70.392 70.989 -6.1757 52 31 2 0 0 0 0.00053139 3 50211 50211;50327;50445 88.364 44.591 1 15700000 13515 3859 9190 9377 16046;16047;16048 16046 0.005487648436201198 FPLEAVREDAF 11 Unmodified _FPLEAVREDAF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MSMS AL20221201_MKP_PDAC_01 4 647.3269653320312 2 647.327328 1292.6401 NaN NaN NaN NaN NaN NaN NaN 76.219 1 70.043 69.543 70.543 -6.1757 0 0 0 0.067978 1 49859 49859 57.108 23.663 1 13516 3859 9190 9377 16049 16049 0.005487648436201198 FPLEAVREDAF 11 Unmodified _FPLEAVREDAF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MSMS AL20221201_MKP_PDAC_01 4 647.328369140625 2 647.327328 1292.6401 NaN NaN NaN NaN NaN NaN NaN 76.572 1 70.396 69.896 70.896 -6.1757 0 0 0 0.016898 1 50088 50088 73.196 32.957 1 13517 3859 9190 9377 16050 16050 0.005487648436201198 FPLEDGSFRVF 11 Unmodified _FPLEDGSFRVF_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3304443359375 2 657.32987 1312.64519 0.62003 0.00040757 0.066024 4.34E-05 0.68606 0.00045096 657.3298333221276 82.609 0.65996 82.114 81.767 82.427 -0.4952 49 27 2 0 0 0 0.49694 2 45143 45143;45249 16.566 5.7664 1 797860 13518 6255 9191 9378 16051;16052 16051 0.001370687062262732 FPLEDGSFRVF 11 Unmodified _FPLEDGSFRVF_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.330322265625 2 657.32987 1312.64519 1.9726 0.0012967 -1.3145 -0.00086405 0.65815 0.00043262 657.3290341855811 82.119 0.87646 82.181 81.706 82.582 0.061996 64 34 2 0 0 0 0.0025724 3 45387 45267;45387;45538 79.427 59.012 1 7567900 13519 6255 9191 9378 16053;16054;16055 16054 0.001370687062262732 FPLEDGSFRVF 11 Unmodified _FPLEDGSFRVF_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3309936523438 2 657.32987 1312.64519 1.0517 0.00069132 -0.24518 -0.00016116 0.80653 0.00053016 657.3296672741708 97.104 0.67405 90.929 90.605 91.279 -6.1757 95 38 3 0 0 0 1.4363E-11 4 64492 64210;64248;64363;64492 128.58 88.629 1 52062000 13520 6255 9191 9378 16056;16057;16058;16059 16059 0.001370687062262732 FPLEDWIAL 9 Unmodified _FPLEDWIAL_ 0 0 0 ENST00000395374.1_1_8:133816039-133823376:+|nuORF ENST00000395374.1_1_8:133816039-133823376:+|nuORF ENST00000395374.1_1_8:133816039-133823376:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2578125 2 552.292225 1102.5699 0.32813 0.00018122 -3.1355 -0.0017317 -2.8073 -0.0015505 552.29009027431 65.136 0.31857 65.136 65.052 65.37 0 16 12 2 0 0 0 0.16785 1 36351 36351 23.148 3.7865 1 799120 13521 12767 9192 9379 16060 16060 0.022715112457944997 FPLEFEFIF 9 Unmodified _FPLEFEFIF_ 0 0 0 ENST00000608279.1_1_2:133104517-133104757:-|nuORF ENST00000608279.1_1_2:133104517-133104757:-|nuORF ENST00000608279.1_1_2:133104517-133104757:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 594.8028564453125 2 594.802426 1187.5903 NaN NaN NaN NaN NaN NaN NaN 92.311 1 86.136 85.636 86.636 -6.1757 0 0 0 0.43505 1 61044 61044 18.135 1.1927 1 13522 15869 9193 9380 16061 16061 0.004006819056030508 FPLEKALEAF 10 Unmodified _FPLEKALEAF_ 0 0 0 ENSG00000140263|ENST00000267814|SORD;ENST00000559230.5_1_15:45353218-45365725:+|nuORF;ENST00000559562.1_1_15:45362663-45365725:+|nuORF ENSG00000140263|ENST00000267814|SORD ENSG00000140263|ENST00000267814|SORD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8211669921875 2 582.818607 1163.62266 0.5445 0.00031734 0.50473 0.00029417 1.0492 0.00061151 582.8191270676031 82.605 0.36363 82.11 81.819 82.182 -0.4952 19 14 2 0 0 0 0.66569 1 45197 45197 6.7232 3.1267 1 477810 13523 5213 9194 9381 16062 16062 0.047394693086062034 FPLEKALEAF 10 Unmodified _FPLEKALEAF_ 0 0 0 ENSG00000140263|ENST00000267814|SORD;ENST00000559230.5_1_15:45353218-45365725:+|nuORF;ENST00000559562.1_1_15:45362663-45365725:+|nuORF ENSG00000140263|ENST00000267814|SORD ENSG00000140263|ENST00000267814|SORD MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8182373046875 2 582.818607 1163.62266 0.91579 0.00053374 1.4102 0.00082189 2.326 0.0013556 582.818823704945 98.53 0.14816 92.354 92.253 92.401 -6.1757 23 10 3 0 0 0 0.013158 1 65328 65328 81.915 47.513 1 33767000 13524 5213 9194 9381 16063 16063 0.047394693086062034 FPLELDMTPF 10 Unmodified _FPLELDMTPF_ 0 0 0 nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF;ENSG00000273820|ENST00000621775|USP27X;ENSG00000247746|ENST00000500968|USP51 nc|ENSG00000124422|Q9UPT9-2|USP22 nc|ENSG00000124422|Q9UPT9-2|USP22 MSMS AL20221201_MKP_PDAC_01 4 404.2019958496094 3 403.866859 1208.57875 NaN NaN NaN NaN NaN NaN NaN 86.463 1 80.287 79.787 80.787 -6.1757 0 0 0 0.91523 1 57001 57001 3.8763 0.88109 1 13525 3784 9195 9382 16064 16064 -0.01719883180044235 FPLEQEADL 9 Unmodified _FPLEQEADL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.260009765625 2 531.261122 1060.50769 0.34993 0.0001859 0.20345 0.00010809 0.55338 0.00029399 531.2611919101356 63.791 0.58065 63.791 63.52 64.1 0 39 23 2 0 0 0 0.05447 2 35559 35559;35677 43.858 18.459 1 1281700 13526 8633 9196 9383 16065;16066 16065 -0.020142598931897737 FPLERPKSM 9 Unmodified _FPLERPKSM_ 0 0 0 ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8674926757812 3 368.867193 1103.57975 1.4833 0.00054714 -1.0437 -0.00038499 0.4396 0.00016215 368.86674002619793 39.122 0.38785 34.671 34.488 34.876 -4.4509 42 24 2 0 0 0 0.18144 1 23204 23204 18.721 9.1773 1 21857000 13527 850 9197 9384 16067 16067 0.0321037597952909 FPLETPAF 8 Unmodified _FPLETPAF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2400817871094 2 461.239461 920.46437 0.7584 0.0003498 1.362 0.0006282 2.1204 0.000978 461.2398013615015 80.465 0.76202 79.973 79.53 80.292 -0.49248 62 30 3 0 0 0 0.65867 3 44070 43964;44070;44176 20.871 10.688 1 781930 13528 7042 9198 9385 16068;16069;16070 16069 0.0009559512018313399 FPLFAQLDY 9 Unmodified _FPLFAQLDY_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2848510742188 2 557.2844 1112.55425 NaN NaN NaN NaN NaN NaN NaN 96.259 1 95.954 95.454 96.454 -0.30472 0 0 0 0.84369 1 52570 52570 2.3027 0 1 13529 10109 9199 9386 16071 16071 0.002472247287414575 FPLFAQLDY 9 Unmodified _FPLFAQLDY_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.2848510742188 2 557.2844 1112.55425 2.4961 0.001391 -1.3674 -0.00076206 1.1287 0.00062898 557.2837324434811 95.935 0.46395 95.939 95.651 96.115 0.004158 45 16 4 0 0 0 0.03327 2 53225 53225;53322 53.576 36.633 1 3722200 13530 10109 9199 9386 16072;16073 16072 0.002472247287414575 FPLFAQLDY 9 Unmodified _FPLFAQLDY_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2852172851562 2 557.2844 1112.55425 1.2809 0.0007138 -0.30036 -0.00016738 0.98049 0.00054641 557.2841530094656 100.34 0.21201 94.166 94.058 94.27 -6.1757 28 13 3 0 0 0 0.040472 1 67081 67081 49.669 32.727 1 35191000 13531 10109 9199 9386 16074 16074 0.002472247287414575 FPLFKQLFLV 10 Unmodified _FPLFKQLFLV_ 0 0 0 REV__ENST00000413658.6_1_7:99673178-99674928:-|nuORF REV__ENST00000413658.6_1_7:99673178-99674928:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 417.8687133789062 3 417.921515 1250.74272 0.98862 0.00041317 -1.2308 -0.00051438 -0.24218 -0.00010121 417.9208383911759 45.892 0.51136 40.937 40.729 41.241 -4.9549 81 33 3 0 0 0 0.24005 1 28169 28169 0.77653 0 1 18321000 + 13532 26736 9200 9387 16075 16075 0.12737502373011012 FPLGPCPRY 9 Carbamidomethyl (C) _FPLGPC(Carbamidomethyl (C))PRY_ FPLGPC(1)PRY FPLGPC(60)PRY 0 1 0 ENST00000534752.5_1_11:47260907-47267123:-|nuORF;ENSG00000134575|ENST00000672073|ACP2 ENST00000534752.5_1_11:47260907-47267123:-|nuORF ENST00000534752.5_1_11:47260907-47267123:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.77880859375 2 553.776219 1105.53789 0.78216 0.00043314 2.5222 0.0013967 3.3044 0.0018299 553.7783176425493 56.565 0.23953 50.588 50.428 50.668 -5.9769 20 13 2 0 0 0 0.023164 1 36090 36090 60.39 22.238 1 18920000 13533 4622 9201 9388 16076 16076 476 -0.010661797089824177 FPLGPCPRY 9 Carbamidomethyl (C) _FPLGPC(Carbamidomethyl (C))PRY_ 0 1 0 ENST00000534752.5_1_11:47260907-47267123:-|nuORF;ENSG00000134575|ENST00000672073|ACP2 ENST00000534752.5_1_11:47260907-47267123:-|nuORF ENST00000534752.5_1_11:47260907-47267123:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.776219 1105.53789 0.59568 0.00032987 3.2185 0.0017823 3.8142 0.0021122 554.2797446315494 50.809 0.6375 50.755 50.57 51.207 -0.053871 0.083573 0.00032366 NaN 60.39 46 31 2 NaN NaN NaN NaN 0 NaN NaN 0 3257900 13534 4622 9201 9388 476 -0.010661797089824177 FPLGRDRMY 9 Unmodified _FPLGRDRMY_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5301208496094 3 385.530693 1153.57025 0.84437 0.00032553 -0.73233 -0.00028233 0.11205 4.3198E-05 385.53034686415555 45.3 0.95992 40.345 39.872 40.832 -4.9549 158 64 3 0 0 0 0.094149 3 27782 27487;27637;27782 26.021 11.615 1 37922000 13535 10112 9202 9389 16077;16078;16079 16079 -0.0003939230598462018 FPLGRDRMY 9 Unmodified _FPLGRDRMY_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MSMS AL20221201_MKP_PDAC_01 4 577.7940673828125 2 577.792401 1153.57025 NaN NaN NaN NaN NaN NaN NaN 45.212 1 40.288 39.788 40.788 -4.9233 0 0 0 0.16996 1 27715 27715 34.402 16.255 1 13536 10112 9202 9389 16080 16080 -0.0003939230598462018 FPLGTPRLGL 10 Unmodified _FPLGTPRLGL_ 0 0 0 REV__ENST00000595775.5_1_19:42817488-42818494:+|nuORF REV__ENST00000595775.5_1_19:42817488-42818494:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2146301269531 3 357.550082 1069.62842 0.428 0.00015303 2.2678 0.00081087 2.6959 0.0009639 357.5508513763304 49.332 0.24294 49.288 49.093 49.336 -0.04369 19 11 2 0 0 0 0.23926 1 26649 26649 1.5923 0.39894 1 717730 + 13537 29215 9203 9390 16081 16081 0.09638612610933706 FPLHFDENSF 10 Unmodified _FPLHFDENSF_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2872314453125 2 626.785296 1251.55604 0.017615 1.1041E-05 1.233 0.00077285 1.2507 0.00078389 626.7857744591523 70.421 0.45807 70.421 70.203 70.661 0 32 18 2 0 0 0 0.66569 1 39195 39195 6.7232 2.3939 1 642340 13538 10024 9204 9391 16082 16082 -0.05967766253297668 FPLHFDENSF 10 Unmodified _FPLHFDENSF_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.7854614257812 2 626.785296 1251.55604 0.26036 0.00016319 0.087369 5.4762E-05 0.34773 0.00021795 626.7852740005461 70.937 0.64293 70.46 70.148 70.791 -0.47735 102 30 4 0 0 0 0.017277 4 38775 38674;38775;38875;38978 78.149 21.972 1 11811000 13539 10024 9204 9391 16083;16084;16085;16086 16084 -0.05967766253297668 FPLHFDENSF 10 Unmodified _FPLHFDENSF_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.7846069335938 2 626.785296 1251.55604 0.81764 0.00051248 -0.095236 -5.9693E-05 0.7224 0.00045279 626.78523028775 70.335 0.52505 70.37 70.173 70.698 0.035507 55 24 3 0 0 0 0.037795 1 38731 38731 64.236 39.245 1 4036100 13540 10024 9204 9391 16087 16087 -0.05967766253297668 FPLHFDENSFF 11 Unmodified _FPLHFDENSFF_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.3204956054688 2 700.319502 1398.62445 -0.20264 -0.00014191 1.4943 0.0010465 1.2916 0.00090456 700.320756212585 98.999 0.15841 92.824 92.764 92.923 -6.1757 15 9 2 0 0 0 0.063019 1 65811 65811 69.105 47.568 1 25207000 13541 10024 9205 9392 16088 16088 -0.05891521673447642 FPLHHPPS 8 Unmodified _FPLHHPPS_ 0 0 0 ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENST00000460547.6_1_6:43480300-43480648:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2432250976562 2 466.24287 930.471186 0.2329 0.00010859 0.067195 3.1329E-05 0.3001 0.00013992 466.24274330876244 48.916 0.26625 48.544 48.427 48.693 -0.37172 23 13 2 0 0 0 0.72953 1 26282 26282 14.582 0 1 2313400 13542 13641 9206 9393 16089 16089 0.0031695279142240906 FPLHKIFHL 9 Unmodified _FPLHKIFHL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8967590332031 3 384.562321 1150.66514 1.8373 0.00070654 0.036052 1.3864E-05 1.8733 0.0007204 384.8964806431346 97.565 0.12653 91.389 91.295 91.421 -6.1757 14 6 3 0 0 0 0.18144 1 64676 64676 24.991 12.75 1 13385000 13543 5686 9207 9394 16090 16090 0.09582909227515302 FPLHLPLEL 9 Unmodified _FPLHLPLEL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.81787109375 2 539.81841 1077.62227 0.22958 0.00012393 0.76546 0.00041321 0.99504 0.00053714 539.8187382502862 96.123 0.15632 95.818 95.738 95.894 -0.30472 14 8 2 0 0 0 0.58466 1 52502 52502 2.3027 0 1 310950 13544 2724 9208 9395 16091 16091 0.0865609437942112 FPLHLPLEL 9 Unmodified _FPLHLPLEL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8191528320312 2 539.81841 1077.62227 2.1767 0.001175 -0.56728 -0.00030623 1.6095 0.00086882 539.8180037412667 95.602 0.3598 95.606 95.404 95.764 0.0041504 43 13 4 0 0 0 0.012158 2 53061 53061;53160 74.396 27.475 1 11715000 13545 2724 9208 9395 16092;16093 16092 0.0865609437942112 FPLHLPLEL 9 Unmodified _FPLHLPLEL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8191528320312 2 539.81841 1077.62227 1.1542 0.00062304 0.51031 0.00027547 1.6645 0.00089851 539.8185699102995 100.18 0.24973 94.008 93.838 94.088 -6.1757 40 15 3 0 0 0 0.040472 1 66861 66861 49.669 17.552 1 60647000 13546 2724 9208 9395 16094 16094 0.0865609437942112 FPLHTSVTL 9 Unmodified _FPLHTSVTL_ 0 0 0 ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD;ENST00000484843.1_1_4:106638770-106744253:+|nuORF ENSG00000138780|ENST00000515279|GSTCD ENSG00000138780|ENST00000515279|GSTCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7842407226562 2 507.784567 1013.55458 0.61054 0.00031002 -0.25218 -0.00012805 0.35836 0.00018197 507.7843954331148 59.046 0.38393 58.985 58.782 59.166 -0.060719 25 18 2 0 0 0 0.013472 1 32141 32141 70.716 22.37 1 1621200 13547 5106 9209 9396 16095 16095 0.048346444486242035 FPLIARTRDHY 11 Unmodified _FPLIARTRDHY_ 0 0 0 ENST00000508849.1_1_4:124321519-124322783:+|nuORF;ENST00000507703.1_1_4:124319460-124322783:+|nuORF ENST00000508849.1_1_4:124321519-124322783:+|nuORF ENST00000508849.1_1_4:124321519-124322783:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.5861206054688 3 463.585966 1387.73607 -0.17705 -8.2077E-05 1.0468 0.0004853 0.86979 0.00040322 463.92065433724855 36.872 0.2783 36.894 36.706 36.984 0.021545 19 12 2 0 0 0 0.70705 1 19523 19523 3.5927 1.1579 1 1964900 13548 14545 9210 9397 16096 16096 0.057709574743967096 FPLIEVNKVYY 11 Unmodified _FPLIEVNKVYY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.8790893554688 2 692.879196 1383.74384 0.30455 0.00021101 -0.24929 -0.00017273 0.055257 3.8286E-05 692.8789735758667 75.955 0.45403 76.003 75.75 76.204 0.047943 61 19 4 0 0 0 0.016317 2 41945 41832;41945 61.09 44.941 1 20147000 13549 4401 9211 9398 16097;16098 16098 0.06731671951297358 FPLIEVNKVYY 11 Unmodified _FPLIEVNKVYY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.8788452148438 2 692.879196 1383.74384 0.57865 0.00040094 0.17654 0.00012232 0.75519 0.00052326 692.879315078299 90.508 0.65629 84.332 83.988 84.644 -6.1757 102 38 4 0 0 0 8.4394E-07 3 59612 59612;59744;59894 104.48 77.261 1 60007000 13550 4401 9211 9398 16099;16100;16101 16099 0.06731671951297358 FPLIFHFTF 9 Unmodified _FPLIFHFTF_ 0 0 0 REV__ENSG00000198727|ENST00000361789|MT-CYB REV__ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3236083984375 2 584.813128 1167.6117 0.479 0.00028013 0.21487 0.00012566 0.69388 0.00040579 584.8130500740341 79.796 0.48935 79.851 79.602 80.092 0.054977 79 19 6 0 0 0 0.28023 1 44214 44214 19.439 1.304 1 77782000 + 13551 24046 9212 9399 16102 16102 0.03460111724984927 FPLIPQEAF 9 Unmodified _FPLIPQEAF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2;CMTR2|p.S124I|1|0.21|ENSG00000180917|chr16:71285550-71285550|C/A|missense_variant ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2872924804688 2 531.286943 1060.55933 0.37598 0.00019975 -0.81698 -0.00043405 -0.441 -0.0002343 531.2867515647235 90.46 0.42904 89.966 89.758 90.187 -0.49458 41 19 3 0 0 0 0.12841 2 49500 49396;49500 30.225 17.693 1 3088000 13552 8933 9213 9400 16103;16104 16104 0.031475285913757034 FPLIPQEAF 9 Unmodified _FPLIPQEAF_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2;CMTR2|p.S124I|1|0.21|ENSG00000180917|chr16:71285550-71285550|C/A|missense_variant ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2875366210938 2 531.286943 1060.55933 NaN NaN NaN NaN NaN NaN NaN 89.883 1 89.925 89.425 90.425 0.042175 0 0 0 0.13852 1 49997 49997 38.151 13.477 1 13553 8933 9213 9400 16105 16105 0.031475285913757034 FPLIRNCEL 9 Carbamidomethyl (C) _FPLIRNC(Carbamidomethyl (C))EL_ FPLIRNC(1)EL FPLIRNC(89)EL 0 1 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MSMS AL20221201_MKP_PDAC_01 4 581.305908203125 2 581.307884 1160.60121 NaN NaN NaN NaN NaN NaN NaN 65.479 1 59.304 58.804 59.804 -6.1757 0 0 0 0.01231 1 42506 42506 88.954 32.777 1 13554 16348 9214 9401 16106 16106 1025 0.027337610082440733 FPLKALQY 8 Unmodified _FPLKALQY_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2850646972656 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 57.778 1 57.712 57.212 58.212 -0.066036 0 0 0 0.22128 1 31455 31455 81.864 38.896 1 13555 3783 9215 9402 16107 16107 0.06371849799540996 FPLKALQY 8 Unmodified _FPLKALQY_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS AL20221201_MKP_PDAC_01 4 490.2846374511719 2 490.284203 978.553853 NaN NaN NaN NaN NaN NaN NaN 63.532 1 57.357 56.857 57.857 -6.1757 0 0 0 0.37735 1 41085 41085 56.541 22.354 1 13556 3783 9215 9402 16108 16108 0.06371849799540996 FPLKKCLRF 9 Unmodified _FPLKKCLRF_ 0 0 0 REV__nc|ENSG00000104450|Q07617-2|SPAG1 REV__nc|ENSG00000104450|Q07617-2|SPAG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2190551757812 3 384.563445 1150.66851 0.15265 5.8705E-05 4.1753 0.0016057 4.328 0.0016644 384.5648023227277 54.552 0.19854 54.485 54.402 54.6 -0.066936 14 9 2 0 0 0 0.21404 1 29597 29597 2.7352 1.5419 1 3159900 + 13557 29545 9216 9403 16109 16109 0.09919836009862593 FPLKVFGY 8 Unmodified _FPLKVFGY_ 0 0 0 ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7734375 2 485.773471 969.53239 0.48121 0.00023376 -0.413 -0.00020062 0.068217 3.3138E-05 485.77320203229334 73.771 0.39291 73.815 73.635 74.028 0.043983 54 18 4 0 0 0 0.28922 2 40717 40609;40717 56.541 35.763 1 23255000 13558 10715 9217 9404 16110;16111 16111 0.04640464770852759 FPLKVFGY 8 Unmodified _FPLKVFGY_ 0 0 0 ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2755432128906 2 485.773471 969.53239 0.11709 5.688E-05 0.52748 0.00025623 0.64457 0.00031311 485.7737732643438 93.22 0.72828 87.045 86.59 87.318 -6.1757 115 51 3 0 0 0 0.26159 4 61458 61408;61458;61598;61727 60.39 40.951 1 52890000 13559 10715 9217 9404 16112;16113;16114;16115 16113 0.04640464770852759 FPLLATAY 8 Unmodified _FPLLATAY_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 895.4930419921875 1 895.492381 894.485105 0.46212 0.00041382 2.6707 0.0023916 3.1328 0.0028054 895.4944880102076 79.64 0.43156 79.695 79.445 79.876 0.05497 30 16 3 0 0 0 0.18701 2 43922 43922;44044 75.128 11.734 1 3864200 13560 6793 9218 9405 16116;16117 16116 0.033641854998336385 FPLLATAY 8 Unmodified _FPLLATAY_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 895.4920654296875 1 895.492381 894.485105 0.74755 0.00066943 0.7144 0.00063974 1.462 0.0013092 895.4926652649966 87.804 0.57689 81.629 81.237 81.814 -6.1757 54 31 2 0 0 0 0.076458 3 57714 57714;57837;57962 119.03 51.993 1 20150000 13561 6793 9218 9405 16118;16119;16120 16118 0.033641854998336385 FPLLATAY 8 Unmodified _FPLLATAY_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MSMS AL20221201_MKP_PDAC_01 4 448.2504577636719 2 448.249829 894.485105 NaN NaN NaN NaN NaN NaN NaN 87.747 1 81.571 81.071 82.071 -6.1757 0 0 0 0.43608 1 57870 57870 48.848 3.0979 1 13562 6793 9218 9405 16121 16121 0.033641854998336385 FPLLATAY 8 Unmodified _FPLLATAY_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 895.492381 894.485105 0.25338 0.0002269 1.3394 0.0011994 1.5928 0.0014263 895.4935341464317 80.158 0.40297 79.669 79.507 79.91 -0.48932 -0.013315 -0.00052604 NaN 75.128 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 933600 13563 6793 9218 9405 0.033641854998336385 FPLLHSGFF 9 Unmodified _FPLLHSGFF_ 0 0 0 REV__ENSG00000185245|ENST00000329125|GP1BA REV__ENSG00000185245|ENST00000329125|GP1BA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7577514648438 2 532.781828 1063.5491 0.50737 0.00027032 -2.0625 -0.0010989 -1.5551 -0.00082855 533.2844091415368 64.59 0.49828 64.104 63.949 64.447 -0.48512 38 22 3 0 0 0 0.203 1 35399 35399 9.3474 2.9933 1 2194200 + 13564 23486 9219 9406 16122 16122 0.019869656568062055 FPLLKENLEFY 11 Unmodified _FPLLKENLEFY_ 0 0 0 ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF ENST00000258399.7_1_2:219319505-219319628:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 706.8760986328125 2 706.876653 1411.73875 0.73559 0.00051997 0.24522 0.00017334 0.98081 0.00069331 706.8770006795479 95.06 0.32969 88.884 88.711 89.04 -6.1757 60 17 4 0 0 0 0.35681 1 62890 62890 23.79 2.2528 1 80720000 13565 11202 9220 9407 16123 16123 0.049353680886497386 FPLLLLVIL 9 Unmodified _FPLLLLVIL_ 0 0 0 REV__nc|ENSG00000182240|Q9Y5Z0-5|BACE2 REV__nc|ENSG00000182240|Q9Y5Z0-5|BACE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1040.220336914062 1 1040.71182 1039.70454 1.7204 0.0017904 -0.95964 -0.00099871 0.76071 0.00079168 1040.7134162022567 50.111 0.21988 50.062 49.907 50.127 -0.048824 15 10 2 0 0 0 0.21889 1 27110 27110 0.6015 0 1 2084800 + 13566 23253 9221 9408 16124 16124 0.18627616458365992 FPLLLQEAL 9 Unmodified _FPLLLQEAL_ 0 0 0 nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3;nc|ENSG00000140859|Q9BVG8-4|KIFC3;KIFC3|p.R401M|1|0.18|ENSG00000140859|chr16:57769611-57769611|C/A|missense_variant nc|ENSG00000140859|Q9BVG8-5|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3104858398438 2 522.310418 1042.60628 1.3734 0.00071734 0.32346 0.00016895 1.6969 0.00088628 522.3105507305514 101.09 0.10672 94.915 94.85 94.956 -6.1757 8 5 2 0 0 0 0.12841 1 67766 67766 30.225 7.0764 1 41244000 13567 5277 9222 9409 16125 16125 0.08668388142518779 FPLLPKVLQKY 11 Unmodified _FPLLPKVLQKY_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1;ENST00000515319.6_1_X:2405587-2406978:-|nuORF ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2807922363281 3 449.279591 1344.81694 1.2937 0.00058125 -0.13182 -5.9225E-05 1.1619 0.00052202 449.27946368291987 70.624 0.66252 70.66 70.358 71.021 0.035507 60 30 3 0 0 0 0.4121 2 38904 38803;38904 20.871 15.468 1 4175800 13568 10506 9223 9410 16126;16127 16127 0.15832845464547063 FPLLPKVLQKY 11 Unmodified _FPLLPKVLQKY_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1;ENST00000515319.6_1_X:2405587-2406978:-|nuORF ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2796325683594 3 449.279591 1344.81694 1.1134 0.00050025 0.064163 2.8827E-05 1.1776 0.00052908 449.2795409381517 94.871 0.30971 88.695 88.527 88.837 -6.1757 56 17 4 0 0 0 0.23097 1 62797 62797 30.431 16.213 1 41599000 13569 10506 9223 9410 16128 16128 0.15832845464547063 FPLLPKVLQKY 11 Unmodified _FPLLPKVLQKY_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1;ENST00000515319.6_1_X:2405587-2406978:-|nuORF ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.9182739257812 2 673.415749 1344.81694 0.77935 0.00052483 0.9214 0.00062049 1.7008 0.0011453 673.416075059385 94.859 0.16131 88.683 88.625 88.787 -6.1757 12 8 2 0 0 0 0.012958 1 62865 62865 89.401 45.542 1 6623400 13570 10506 9223 9410 16129 16129 0.15832845464547063 FPLLPQDVHLL 11 Unmodified _FPLLPQDVHLL_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.3746948242188 2 646.374081 1290.73361 1.7529 0.001133 -1.1185 -0.00072298 0.63441 0.00041007 646.3736418719507 92.602 0.28389 92.632 92.494 92.778 0.030197 18 10 3 0 0 0 0.020907 1 51521 51521 53.404 27.136 1 3511800 13571 9227 9224 9411 16130 16130 0.09987109016719842 FPLLPQDVHLL 11 Unmodified _FPLLPQDVHLL_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3751831054688 2 646.374081 1290.73361 0.79427 0.0005134 0.27262 0.00017621 1.0669 0.00068961 646.3740460988633 99.487 0.12253 93.312 93.276 93.399 -6.1757 12 7 2 0 0 0 0.00016035 1 66282 66282 110.79 65.093 1 34807000 13572 9227 9224 9411 16131 16131 0.09987109016719842 FPLLSSAQVHF 11 Unmodified _FPLLSSAQVHF_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.334716796875 2 623.334956 1244.65536 0.63223 0.00039409 -0.7812 -0.00048695 -0.14897 -9.2858E-05 623.3343925859352 78.792 0.50114 78.847 78.604 79.105 0.05497 65 19 5 0 0 0 0.0128 2 43553 43452;43553 85.764 64.174 1 121160000 13573 7712 9225 9412 16132;16133 16133 0.04281676431446613 FPLLSSAQVHF 11 Unmodified _FPLLSSAQVHF_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.835693359375 2 623.334956 1244.65536 0.83147 0.00051828 0.17695 0.0001103 1.0084 0.00062858 623.3350374466959 93.89 0.59963 87.714 87.412 88.012 -6.1757 126 34 5 0 0 0 1.764E-06 3 62025 62025;62163;62284 132.13 90.295 1 402990000 13574 7712 9225 9412 16134;16135;16136 16134 0.04281676431446613 FPLLVEKL 8 Unmodified _FPLLVEKL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.8025207519531 2 479.802229 957.589904 -0.030575 -1.467E-05 1.066 0.00051148 1.0354 0.00049681 479.8027632245442 76.796 0.37032 76.317 76.13 76.5 -0.47945 48 17 4 0 0 0 0.27285 2 41990 41990;42098 58.679 3.912 1 5420500 13575 4951;8967 9226 9413 16137;16138 16137 0.10941306976428677 FPLLVEKL 8 Unmodified _FPLLVEKL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.8016052246094 2 479.802229 957.589904 0.20458 9.8156E-05 -0.82667 -0.00039664 -0.6221 -0.00029848 479.8018348612003 76.246 0.3586 76.294 76.109 76.467 0.047943 35 14 3 0 0 0 0.074014 2 42020 42020;42124 120.45 15.651 1 21320000 13576 4951;8967 9226 9413 16139;16140 16139 0.10941306976428677 FPLLVEKL 8 Unmodified _FPLLVEKL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.8027648925781 2 479.802229 957.589904 0.90915 0.00043621 0.37328 0.0001791 1.2824 0.00061531 479.8023452506948 93.727 0.55461 87.551 87.233 87.788 -6.1757 85 33 3 0 0 0 0.074014 3 62016 61878;62016;62148 120.45 27.628 1 74573000 13577 4951;8967 9226 9413 16141;16142;16143 16142 0.10941306976428677 FPLLYVPQP 9 Unmodified _FPLLYVPQP_ 0 0 0 ENST00000401548.7_2_22:42148640-42154384:+|nuORF ENST00000401548.7_2_22:42148640-42154384:+|nuORF ENST00000401548.7_2_22:42148640-42154384:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.8024291992188 2 537.305136 1072.59572 0.40844 0.00021946 -1.1553 -0.00062073 -0.74682 -0.00040127 537.3047279337485 67.526 0.57963 67.043 66.695 67.275 -0.48218 67 25 4 0 0 0 0.39863 1 36809 36809 12.532 0 1 14279000 13578 12883 9227 9414 16144 16144 0.06232405488094628 FPLPDPLPPQ 10 Unmodified _FPLPDPLPPQ_ 0 0 0 REV__ENST00000463307.5_1_7:73107559-73112213:+|nuORF REV__ENST00000463307.5_1_7:73107559-73112213:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3033447265625 2 560.8055 1119.59645 0.62468 0.00035032 1.899 0.001065 2.5237 0.0014153 560.8085647205778 52.655 0.47028 52.221 52.044 52.514 -0.43367 49 23 3 0 0 0 0.56675 1 28395 28395 14.838 2.3067 1 13507000 + 13579 27348 9228 9415 16145 16145 0.04143200137150416 FPLPEIYN 8 Unmodified _FPLPEIYN_ 0 0 0 REV__ENST00000372687.4_1_10:76928408-76935887:+|nuORF REV__ENST00000372687.4_1_10:76928408-76935887:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.2570190429688 2 496.758018 991.501483 1.1983 0.00059524 1.036 0.00051465 2.2343 0.0011099 496.7587887402073 71.33 1.1934 65.155 64.443 65.637 -6.1757 97 61 2 0 0 0 8.7369 1 46246 46246 14.582 5.9884 1 109880000 + 13580 26120 9229 9416 16146 16146 0.005392666659417955 FPLPGLPDF 9 Unmodified _FPLPGLPDF_ 0 0 0 nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7695922851562 2 501.768386 1001.52222 0.97844 0.00049095 0.48154 0.00024162 1.46 0.00073257 501.7684656826737 100.56 0.28318 100.52 100.4 100.68 -0.04216 29 10 4 0 0 0 0.045537 1 55884 55884 46.921 24.468 1 12803000 13581 8640 9230 9417 16147 16147 0.021518570456123598 FPLPGLPDF 9 Unmodified _FPLPGLPDF_ 0 0 0 nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;nc|ENSG00000176974|P34896-4|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.76904296875 2 501.768386 1001.52222 1.0298 0.00051674 -0.044216 -2.2186E-05 0.98562 0.00049456 501.76836102761814 101.36 0.32632 95.18 95.046 95.373 -6.1757 37 17 3 0 0 0 0.019979 1 67987 67987 63.563 41.11 1 98960000 13582 8640 9230 9417 16148 16148 0.021518570456123598 FPLPPSSIGY 10 Unmodified _FPLPPSSIGY_ 0 0 0 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.8283081054688 2 539.2844 1076.55425 -0.027742 -1.4961E-05 0.011986 6.4636E-06 -0.015757 -8.4973E-06 539.2843513952494 85.041 0.45508 78.865 78.582 79.037 -6.1757 46 26 3 0 0 0 0.17615 1 56101 56101 34.102 10.954 1 19337000 13583 9195 9231 9418 16149 16149 0.019032247287668724 FPLPQSLSL 9 Unmodified _FPLPQSLSL_ 0 0 0 ENST00000591445.1_1_17:67501802-67515615:+|nuORF ENST00000591445.1_1_17:67501802-67515615:+|nuORF ENST00000591445.1_1_17:67501802-67515615:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2663269042969 2 501.286943 1000.55933 0.10539 5.2831E-05 1.2266 0.00061488 1.332 0.00066771 501.2877588449726 77.011 0.47018 77.061 76.776 77.246 0.05011 33 19 3 0 0 0 0.078417 1 42443 42443 38.151 15.003 1 3519800 13584 15706 9232 9419 16150 16150 0.059075285913763764 FPLPSQVF 8 Unmodified _FPLPSQVF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MSMS AL20221201_MKP_PDAC_01 4 467.7565002441406 2 467.755278 933.496004 NaN NaN NaN NaN NaN NaN NaN 97.166 1 90.991 90.491 91.491 -6.1757 0 0 0 0.26291 1 64398 64398 67.035 10.494 1 13585 3021 9233 9420 16151 16151 0.02659587874143199 FPLPSQVFANY 11 Unmodified _FPLPSQVFANY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8267211914062 2 641.826963 1281.63937 1.1055 0.00070955 -0.33107 -0.00021249 0.77444 0.00049706 641.8264042394118 91.413 0.39815 91.45 91.244 91.642 0.036507 21 14 2 0 0 0 0.21145 1 50827 50827 45.74 36.994 1 5382700 13586 3021 9234 9421 16152 16152 0.009819701945843917 FPLPSQVFANY 11 Unmodified _FPLPSQVFANY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.8269653320312 2 641.826963 1281.63937 0.82184 0.00052748 -1.3036 -0.00083665 -0.48171 -0.00030917 641.8260482473876 99.334 0.17949 93.158 93.081 93.261 -6.1757 21 11 3 0 0 0 0.0065946 1 66125 66125 89.401 63.133 1 46144000 13587 3021 9234 9421 16153 16153 0.009819701945843917 FPLPTSPA 8 Unmodified _FPLPTSPA_ 0 0 0 ENST00000503131.1_2_17:48206901-48207210:-|nuORF ENST00000503131.1_2_17:48206901-48207210:-|nuORF ENST00000503131.1_2_17:48206901-48207210:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 829.44482421875 1 829.445431 828.438155 -0.068299 -5.665E-05 -0.29751 -0.00024677 -0.36581 -0.00030342 829.4451539090117 64.752 0.78387 64.752 64.386 65.169 0 64 37 2 0 0 0 0.65867 1 36182 36182 20.871 0 1 1969800 13588 14466 9235 9422 16154 16154 0.017073259487119685 FPLQFIFFISI 11 Unmodified _FPLQFIFFISI_ 0 0 0 REV__nc|ENSG00000258806|Q8NGC8|OR11H7 REV__nc|ENSG00000258806|Q8NGC8|OR11H7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.8914794921875 2 686.389199 1370.76385 1.0368 0.00071168 -1.5623 -0.0010724 -0.52547 -0.00036068 686.3880453553638 99.257 0.18403 93.081 92.99 93.174 -6.1757 28 10 4 0 0 0 0.16515 1 66010 66010 34.932 8.6639 1 93273000 + 13589 29988 9236 9423 16155 16155 0.09329467681914139 FPLQPGKVATF 11 Unmodified _FPLQPGKVATF_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;ENST00000518839.1_1_8:141226147-141272748:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8403930664062 2 602.839874 1203.66519 0.83741 0.00050482 0.77778 0.00046887 1.6152 0.0009737 602.8403545733277 63.876 0.56347 63.865 63.59 64.154 -0.010532 79 27 4 0 0 0 1.1447E-06 2 34979 34882;34979 103.82 63.866 1 14491000 13590 7643 9237 9424 16156;16157 16157 0.07150864436835036 FPLQPGKVATF 11 Unmodified _FPLQPGKVATF_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;ENST00000518839.1_1_8:141226147-141272748:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.8400268554688 2 602.839874 1203.66519 0.4144 0.00024982 -0.049992 -3.0137E-05 0.36441 0.00021968 602.8396442690234 72.017 0.68185 65.841 65.73 66.412 -6.1757 45 35 2 0 0 0 0.00053139 2 47256 47120;47256 88.364 50.39 1 15802000 13591 7643 9237 9424 16158;16159 16159 0.07150864436835036 FPLRILVPTQF 11 Unmodified _FPLRILVPTQF_ 0 0 0 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.8977661132812 2 665.897723 1329.78089 -0.083938 -5.5894E-05 -0.51269 -0.0003414 -0.59663 -0.0003973 665.8970065459473 99.831 0.090347 93.655 93.6 93.691 -6.1757 12 6 2 0 0 0 0.00028183 1 66606 66606 91.085 59.047 1 26904000 13592 1113 9238 9425 16160 16160 0.12919388287696165 FPLRQQEMSM 10 Unmodified _FPLRQQEMSM_ 0 0 0 nc|ENSG00000189367|Q6ZU52-2|KIAA0408;ENST00000368281.1_1_6:127765256-127771512:-|nuORF;ENSG00000189367|ENST00000483725|KIAA0408 nc|ENSG00000189367|Q6ZU52-2|KIAA0408 nc|ENSG00000189367|Q6ZU52-2|KIAA0408 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2045288085938 3 422.870498 1265.58966 0.087378 3.6949E-05 0.75634 0.00031983 0.84372 0.00035678 422.8708459709 19.389 0.2007 19.397 19.28 19.481 0.0078487 30 11 4 0 0 0 0.67033 1 9842 9842 3.3196 0 1 3385000 13593 9747 9239 9426 16161 16161 -0.03250804077401881 FPLRSRWL 8 Unmodified _FPLRSRWL_ 0 0 0 REV__ENST00000355803.8_1_16:1359233-1359413:+|nuORF REV__ENST00000355803.8_1_16:1359233-1359413:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.8134155273438 2 537.813993 1073.61343 NaN NaN NaN NaN NaN NaN NaN 68.458 1 67.977 67.477 68.477 -0.48071 0 0 0 0.94061 1 37414 37414 12.532 0 1 + 13594 25816 9240 9427 16162 16162 0.0795716553359398 FPLRTTKVCF 10 Carbamidomethyl (C) _FPLRTTKVC(Carbamidomethyl (C))F_ FPLRTTKVC(1)F FPLRTTKVC(85)F 0 1 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8444213867188 2 634.844633 1267.67471 0.67716 0.00042989 -0.68094 -0.00043229 -0.0037763 -2.3974E-06 634.8438508246072 54.744 0.43642 48.878 48.713 49.15 -5.8653 47 26 3 0 0 0 0.01173 1 34853 34853 84.522 61.786 1 20163000 13595 4951 9241 9428 16163 16163 512 0.05158309450712295 FPLSEGMCHL 10 Unmodified _FPLSEGMCHL_ 0 0 0 ENSG00000153157|ENST00000283141|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF;nc|ENSG00000153157|Q5T4T6-2|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2608642578125 2 567.259545 1132.50454 0.41549 0.00023569 0.45582 0.00025857 0.87131 0.00049426 567.2598659366533 69.221 0.53362 69.221 68.911 69.444 0 28 23 2 0 0 0 0.52888 1 38462 38462 14.838 0.25658 1 991850 13596 6243 9242 9429 16164 16164 -0.05641549543202018 FPLSESQTL 9 Unmodified _FPLSESQTL_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.263427734375 2 511.263665 1020.51278 0.29107 0.00014881 1.3525 0.00069149 1.6436 0.0008403 511.2628207538548 58.794 0.5798 58.794 58.489 59.068 0 56 25 4 0 0 0 0.026094 1 32828 32828 57.471 19.497 1 6700900 13597 3229;16326 9243 9430 16165 16165 0.003340439694284214 FPLSESQTL 9 Unmodified _FPLSESQTL_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2642211914062 2 511.263665 1020.51278 0.11169 5.7104E-05 0.80831 0.00041326 0.92001 0.00047037 511.7663517746805 59.762 0.88091 59.271 58.771 59.652 -0.49079 66 42 2 0 0 0 0.32871 1 32388 32388 15.847 0.078963 1 1759200 13598 3229;16326 9243 9430 16166 16166 0.003340439694284214 FPLSESQTL 9 Unmodified _FPLSESQTL_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MSMS AL20221201_MKP_PDAC_01 4 511.2644348144531 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 67.287 1 61.111 60.611 61.611 -6.1757 0 0 0 0.12337 1 43823 43823 39.957 3.8303 1 13599 3229;16326 9243 9430 16167 16167 0.003340439694284214 FPLSHLDAL 9 Unmodified _FPLSHLDAL_ 0 0 0 nc|ENSG00000170854|Q8IUF8-3|RIOX2;nc|ENSG00000170854|Q8IUF8-4|RIOX2;ENSG00000170854|ENST00000394198|RIOX2 nc|ENSG00000170854|Q8IUF8-3|RIOX2 nc|ENSG00000170854|Q8IUF8-3|RIOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7780151367188 2 506.776742 1011.53893 0.085305 4.3231E-05 0.73832 0.00037417 0.82363 0.0004174 506.77688175000156 67.328 0.28954 66.845 66.695 66.985 -0.48218 28 12 3 0 0 0 0.087258 1 36767 36767 36.044 17.909 1 1199400 13600 8032 9244 9431 16168 16168 0.03362357931541737 FPLSPDWQVDY 11 Unmodified _FPLSPDWQVDY_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.8201904296875 2 683.819335 1365.62412 1.5816 0.0010815 0.33459 0.0002288 1.9162 0.0013103 683.8193619273482 97.806 0.30795 91.631 91.6 91.908 -6.1757 26 19 2 0 0 0 0.11933 1 64832 64832 40.239 26.624 1 18383000 13601 10781 9245 9432 16169 16169 -0.044069413932902535 FPLSPDWQVDY 11 Unmodified _FPLSPDWQVDY_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MSMS AL20221201_MKP_PDAC_01 4 683.8214111328125 2 683.819335 1365.62412 NaN NaN NaN NaN NaN NaN NaN 97.423 1 91.247 90.747 91.747 -6.1757 0 0 0 0.044622 1 64565 64565 63.961 35.466 1 13602 10781 9245 9432 16170 16170 -0.044069413932902535 FPLSPDWQVDY 11 Unmodified _FPLSPDWQVDY_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000467631.1_1_3:161042821-161042974:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MSMS AL20221201_MKP_PDAC_01 4 683.8190307617188 2 683.819335 1365.62412 NaN NaN NaN NaN NaN NaN NaN 97.638 1 91.462 90.962 91.962 -6.1757 0 0 0 0.35958 1 64703 64703 29.841 10.479 1 13603 10781 9245 9432 16171 16171 -0.044069413932902535 FPLSQPFSL 9 Unmodified _FPLSQPFSL_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.278564453125 2 518.279118 1034.54368 NaN NaN NaN NaN NaN NaN NaN 90.901 1 90.938 90.438 91.438 0.036499 0 0 0 0.028486 1 50563 50563 68.081 11.904 1 13604 6618 9246 9433 16172 16172 0.027792420743253388 FPLSQPFSL 9 Unmodified _FPLSQPFSL_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2796630859375 2 518.279118 1034.54368 NaN NaN NaN NaN NaN NaN NaN 91.241 1 91.278 90.778 91.778 0.036499 0 0 0 0.035065 1 50752 50752 64.236 9.4628 1 13605 6618 9246 9433 16173 16173 0.027792420743253388 FPLSQPFSL 9 Unmodified _FPLSQPFSL_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.281005859375 2 518.279118 1034.54368 0.63697 0.00033013 1.466 0.00075981 2.103 0.0010899 518.2798648493333 99.605 0.2506 93.43 93.29 93.541 -6.1757 32 15 3 0 0 0 0.015445 1 66391 66391 68.081 9.4019 1 51306000 13606 6618 9246 9433 16174 16174 0.027792420743253388 FPLSSLANLF 10 Unmodified _FPLSSLANLF_ 0 0 0 nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4 nc|ENSG00000111199|Q9HBA0-6|TRPV4 nc|ENSG00000111199|Q9HBA0-6|TRPV4 MSMS AL20221201_MKP_PDAC_01 4 554.8054809570312 2 554.8055 1107.59645 NaN NaN NaN NaN NaN NaN NaN 87.891 1 81.715 81.215 82.215 -6.1757 0 0 0 0.47175 1 57970 57970 27.629 2.6378 1 13607 2765 9247 9434 16175 16175 0.04695200137120992 FPLTGGTENLN 11 Unmodified _FPLTGGTENLN_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7884521484375 2 581.790578 1161.5666 0.44503 0.00025891 1.0613 0.00061748 1.5064 0.00087639 581.7908295610246 65.713 0.89016 59.538 59.266 60.156 -6.1757 114 51 3 0 0 0 0.33405 1 42610 42610 24.991 2.2547 1 53523000 13608 8482 9248 9435 16176 16176 -0.007717835988387378 FPLTKVYVV 9 Unmodified _FPLTKVYVV_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3211059570312 2 533.320786 1064.62702 0.9515 0.00050746 -0.11907 -6.3504E-05 0.83243 0.00044395 533.3207142882628 66.045 0.68999 66.055 65.727 66.417 0.0095596 93 34 4 0 0 0 0.0089732 2 36212 36112;36212 86.332 50.205 1 21527000 13609 1381 9249 9436 16177;16178 16178 0.09728978522161924 FPLTKVYVV 9 Unmodified _FPLTKVYVV_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3207397460938 2 533.320786 1064.62702 1.2711 0.00067792 0.32365 0.00017261 1.5948 0.00085053 533.3207993589688 79.729 0.80521 73.554 72.986 73.791 -6.1757 69 47 2 0 0 0 0.082934 1 52307 52307 37.075 10.191 1 10501000 13610 1381 9249 9436 16179 16179 0.09728978522161924 FPLTKVYVV 9 Unmodified _FPLTKVYVV_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.320786 1064.62702 0.13457 7.1768E-05 0.10547 5.6252E-05 0.24004 0.00012802 533.3210201082537 66.526 0.29118 66.042 65.88 66.171 -0.48323 -0.0061408 0.00018483 NaN 86.332 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 674940 13611 1381 9249 9436 0.09728978522161924 FPLTTESAM 9 Oxidation (M) _FPLTTESAM(Oxidation (M))_ FPLTTESAM(1) FPLTTESAM(82) 0 0 1 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7368469238281 2 506.736425 1011.4583 0.049063 2.4862E-05 -0.36926 -0.00018712 -0.3202 -0.00016226 506.73647875447523 45.106 0.62082 45.106 44.808 45.429 0 56 32 3 0 0 0 0.0094915 2 24486 24486;24594 81.864 47.762 1 10689000 13612 10067 9250 9437 16180;16181 16180 1634 -0.04697291173636131 FPLTTESAM 9 Oxidation (M) _FPLTTESAM(Oxidation (M))_ FPLTTESAM(1) FPLTTESAM(78) 0 0 1 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 506.7368774414062 2 506.736425 1011.4583 NaN NaN NaN NaN NaN NaN NaN 52.626 1 46.891 46.391 47.391 -5.7345 0 0 0 0.020354 1 33220 33220 77.984 25.291 1 13613 10067 9250 9437 16182 16182 1634 -0.04697291173636131 FPLTTESAM 9 Unmodified _FPLTTESAM_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000416139.1_1_1:212482446-212482779:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7406005859375 2 498.738968 995.463383 0.8243 0.00041111 -1.0039 -0.00050071 -0.17965 -8.9597E-05 498.7390012184298 66.168 0.71823 59.993 59.723 60.441 -6.1757 69 40 2 0 0 0 0.012158 2 43189 43059;43189 74.396 37.93 1 20246000 13614 10067 9250 9438 16183;16184 16184 -0.034529873110273 FPLVPPPSE 9 Unmodified _FPLVPPPSE_ 0 0 0 ENST00000533968.1_1_11:47397254-47399953:-|nuORF;ENSG00000066336|ENST00000378538|SPI1 ENST00000533968.1_1_11:47397254-47399953:-|nuORF ENST00000533968.1_1_11:47397254-47399953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7663269042969 2 491.765843 981.517133 0.48247 0.00023726 0.53745 0.0002643 1.0199 0.00050156 491.76596460440004 59.299 0.49222 58.808 58.556 59.048 -0.49079 36 22 2 0 0 0 0.095405 2 32309 32194;32309 34.102 3.4659 1 2190600 13615 935 9251 9439 16185;16186 16186 0.025635531829948377 FPLVQWRQ 8 Unmodified _FPLVQWRQ_ 0 0 0 REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF REV__ENST00000229340.9_1_12:120534355-120534604:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3050537109375 2 537.298176 1072.5818 0.9312 0.00050033 3.9386 0.0021162 4.8698 0.0026166 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.66338 1 52030 52030 19.439 0.18201 1 243440000 + 13616 24807 9252 9440 16187 16187 0.0484117277965197 FPLYEPAKM 9 Oxidation (M) _FPLYEPAKM(Oxidation (M))_ FPLYEPAKM(1) FPLYEPAKM(69) 0 0 1 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2792358398438 2 556.27826 1110.54197 0.82328 0.00045797 -0.2624 -0.00014597 0.56088 0.000312 556.2782830006406 46.734 0.72122 46.397 46.073 46.794 -0.33664 60 36 3 0 0 0 0.014417 1 25073 25073 69.105 47.358 1 4450700 13617 5963 9253 9441 16188 16188 1064 -0.008881350059482429 FPLYEPAKM 9 Oxidation (M) _FPLYEPAKM(Oxidation (M))_ 0 0 1 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 556.27826 1110.54197 0.86684 0.0004822 -0.62321 -0.00034668 0.24363 0.00013553 556.2785130020596 52.407 0.14761 46.672 46.617 46.764 -5.7345 0.13758 -0.0003764 NaN 69.105 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 19838000 13618 5963 9253 9441 1064 -0.008881350059482429 FPLYERWQ 8 Unmodified _FPLYERWQ_ 0 0 0 ENST00000471426.1_1_3:29322798-29476407:+|nuORF ENST00000471426.1_1_3:29322798-29476407:+|nuORF ENST00000471426.1_1_3:29322798-29476407:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2499389648438 2 569.787641 1137.56073 0.61501 0.00035042 -1.4263 -0.00081271 -0.81134 -0.00046229 570.288639515481 52.796 0.25768 52.732 52.624 52.882 -0.063423 15 12 2 0 0 0 8.7369 1 28657 28657 5.2307 0 1 1694900 13619 13873 9254 9442 16189 16189 -0.0025483731988060754 FPMAHPPNL 9 Unmodified _FPMAHPPNL_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;ENST00000533421.2_1_11:65820160-65823021:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2591552734375 2 512.257662 1022.50077 0.75758 0.00038808 -0.71535 -0.00036644 0.042228 2.1631E-05 512.2573577059359 59.538 0.42605 53.423 53.131 53.557 -6.1147 51 22 3 0 0 0 0.012148 1 38105 38105 74.423 49.023 1 33404000 13620 1469 9255 9443 16190 16190 -0.009578512547591345 FPMEIRQY 8 Oxidation (M) _FPM(Oxidation (M))EIRQY_ FPM(1)EIRQY FPM(93)EIRQY 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.26611328125 2 550.265684 1098.51682 0.62105 0.00034174 -0.43957 -0.00024188 0.18148 9.9863E-05 550.2656167915596 38.921 0.9976 38.921 38.577 39.575 0 176 46 5 0 0 0 0.12393 4 20779 20779;20903;21013;21123 92.822 44.476 1 93180000 13621 3121 9256 9444 16191;16192;16193;16194 16191 549 -0.0285018980850964 FPMEIRQY 8 Oxidation (M) _FPM(Oxidation (M))EIRQY_ FPM(1)EIRQY FPM(100)EIRQY 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2667846679688 2 550.265684 1098.51682 -0.00045805 -2.5205E-07 -0.49156 -0.00027049 -0.49202 -0.00027074 550.2657225765179 39.324 1.0511 39.037 38.741 39.792 -0.28687 199 49 6 0 0 0 0.084609 5 20619 20619;20725;20829;20929;21034 104.8 47.328 1 143790000 13622 3121 9256 9444 16195;16196;16197;16198;16199 16195 549 -0.0285018980850964 FPMEIRQY 8 Oxidation (M) _FPM(Oxidation (M))EIRQY_ FPM(1)EIRQY FPM(78)EIRQY 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2644653320312 2 550.265684 1098.51682 0.24883 0.00013692 -0.87335 -0.00048058 -0.62452 -0.00034365 550.2654424094983 39.009 0.75073 39.02 38.718 39.469 0.011456 95 35 3 0 0 0 0.17954 2 20659 20659;20871 78.149 44.047 1 6908900 13623 3121 9256 9444 16200;16201 16200 549 -0.0285018980850964 FPMEIRQY 8 Oxidation (M) _FPM(Oxidation (M))EIRQY_ FPM(1)EIRQY FPM(74)EIRQY 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2657470703125 2 550.265684 1098.51682 0.51461 0.00028317 -0.69809 -0.00038413 -0.18348 -0.00010096 550.265782190944 44.085 1.2543 39.321 38.808 40.062 -4.7648 287 90 4 0 0 0 0.18875 6 27337 26670;26805;26945;27075;27212;27337 74.423 40.32 1 499920000 13624 3121 9256 9444 16202;16203;16204;16205;16206;16207 16207 549 -0.0285018980850964 FPMEIRQY 8 Unmodified _FPMEIRQY_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.267822265625 2 542.268227 1082.5219 -0.18287 -9.9165E-05 -0.37968 -0.00020589 -0.56255 -0.00030505 542.268244293831 51.68 0.58097 51.246 50.988 51.569 -0.43367 106 30 4 0 0 0 0.18875 3 27864 27759;27864;27976 74.423 29.039 1 41658000 13625 3121 9256 9445 16208;16209;16210 16209 -0.016058859458780717 FPMEIRQY 8 Unmodified _FPMEIRQY_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2681274414062 2 542.268227 1082.5219 -0.14263 -7.7343E-05 0.08578 4.6516E-05 -0.056849 -3.0827E-05 542.2680389371156 51.28 0.53288 51.226 50.986 51.519 -0.053871 61 26 4 0 0 0 0.44629 2 27779 27779;27913 39.957 13.074 1 5902100 13626 3121 9256 9445 16211;16212 16211 -0.016058859458780717 FPMEIRQY 8 Unmodified _FPMEIRQY_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2684326171875 2 542.268227 1082.5219 0.77861 0.00042222 -0.65208 -0.0003536 0.12653 6.8615E-05 542.2679938181582 57.193 0.81525 51.166 50.777 51.592 -6.0275 175 46 5 0 0 0 0.077523 3 36470 36470;36603;36729 117.6 41.656 1 1213200000 13627 3121 9256 9445 16213;16214;16215 16213 -0.016058859458780717 FPMEIRQYL 9 Oxidation (M) _FPM(Oxidation (M))EIRQYL_ FPM(1)EIRQYL FPM(65)EIRQYL 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8097534179688 2 606.807716 1211.60088 -0.086591 -5.2544E-05 0.042669 2.5892E-05 -0.043922 -2.6652E-05 606.8082026044704 60.568 0.2398 60.078 59.949 60.189 -0.48932 30 11 3 0 0 0 0.018301 1 32949 32949 65.235 42.499 1 18447000 13628 3121 9257 9446 16216 16216 549 0.00354341288402793 FPMEIRQYL 9 Oxidation (M) _FPM(Oxidation (M))EIRQYL_ FPM(1)EIRQYL FPM(63)EIRQYL 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.809326171875 2 606.807716 1211.60088 -0.18388 -0.00011158 0.082152 4.9851E-05 -0.10172 -6.1727E-05 606.8077963261804 60.78 0.24482 60.291 60.168 60.413 -0.48932 27 11 3 0 0 0 0.020973 1 33053 33053 62.573 36.305 1 17232000 13629 3121 9257 9446 16217 16217 549 0.00354341288402793 FPMEIRQYL 9 Oxidation (M) _FPM(Oxidation (M))EIRQYL_ FPM(1)EIRQYL FPM(100)EIRQYL 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.806884765625 2 606.807716 1211.60088 0.35147 0.00021328 -0.77632 -0.00047107 -0.42485 -0.0002578 606.807466661624 60.235 0.28585 60.182 59.994 60.28 -0.053062 43 15 4 0 0 0 0.0087873 1 32784 32784 103.35 39.393 1 46879000 13630 3121 9257 9446 16218 16218 549 0.00354341288402793 FPMEIRQYL 9 Oxidation (M) _FPM(Oxidation (M))EIRQYL_ FPM(1)EIRQYL FPM(61)EIRQYL 0 0 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8079833984375 2 606.807716 1211.60088 0.35886 0.00021776 -0.24262 -0.00014722 0.11625 7.054E-05 606.8075669298253 60.391 0.28452 60.347 60.249 60.533 -0.04351 33 13 3 0 0 0 0.022193 2 32992 32890;32992 61.357 42.1 1 44504000 13631 3121 9257 9446 16219;16220 16220 549 0.00354341288402793 FPMEIRQYL 9 Unmodified _FPMEIRQYL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8112182617188 2 598.810259 1195.60597 0.34838 0.00020861 -0.13374 -8.0083E-05 0.21464 0.00012853 598.8103983592608 90.028 0.7868 83.852 83.488 84.275 -6.1757 137 44 4 0 0 0 0.013041 3 59597 59337;59460;59597 71.922 42.082 1 107820000 13632 3121 9257 9447 16221;16222;16223 16223 0.015986451510343613 FPMELRQFL 9 Oxidation (M) _FPM(Oxidation (M))ELRQFL_ FPM(1)ELRQFL FPM(72)ELRQFL 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8095703125 2 598.810259 1195.60597 -0.039875 -2.3878E-05 0.60093 0.00035984 0.56105 0.00033596 598.810625356741 72.345 0.29613 72.387 72.21 72.507 0.041733 45 13 4 0 0 0 0.013041 2 39796 39796;39900 71.922 51.469 1 45962000 13633 7784 9258 9448 16224;16225 16224 1326 0.015986451510343613 FPMELRQFL 9 Oxidation (M) _FPM(Oxidation (M))ELRQFL_ FPM(1)ELRQFL FPM(56)ELRQFL 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.81005859375 2 598.810259 1195.60597 -0.071258 -4.267E-05 -0.4151 -0.00024857 -0.48636 -0.00029124 598.8101530062876 72.628 0.31638 72.67 72.507 72.823 0.041725 52 14 4 0 0 0 0.028475 1 39999 39999 56.177 34.43 1 36716000 13634 7784 9258 9448 16226 16226 1326 0.015986451510343613 FPMELRQFL 9 Oxidation (M) _FPM(Oxidation (M))ELRQFL_ FPM(1)ELRQFL FPM(56)ELRQFL 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8108520507812 2 598.810259 1195.60597 0.75776 0.00045376 1.9482 0.0011666 2.7059 0.0016203 598.8120941256086 90.757 0.53555 84.581 84.219 84.755 -6.1757 49 31 2 0 0 0 0.028475 1 59850 59850 56.177 23.872 1 27276000 13635 7784 9258 9448 16227 16227 1326 0.015986451510343613 FPMELRQFL 9 Oxidation (M) _FPM(Oxidation (M))ELRQFL_ FPM(1)ELRQFL FPM(65)ELRQFL 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8125610351562 2 598.810259 1195.60597 0.33364 0.00019979 1.2523 0.00074986 1.5859 0.00094965 598.8118387478639 91.094 0.87915 84.918 84.34 85.219 -6.1757 100 51 3 0 0 0 0.018301 2 60220 60220;60343 65.235 32.93 1 22198000 13636 7784 9258 9448 16228;16229 16228 1326 0.015986451510343613 FPMELRQFL 9 Unmodified _FPMELRQFL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.813720703125 2 590.812802 1179.61105 0.45416 0.00026832 -0.24056 -0.00014213 0.2136 0.0001262 590.8127096210471 98.643 0.2638 92.467 92.338 92.602 -6.1757 54 19 4 0 0 0 0.020973 1 65415 65415 62.573 62.573 1 256690000 13637 7784 9258 9449 16230 16230 0.028429490136431923 FPMEWKAKFF 10 Unmodified _FPMEWKAKFF_ 0 0 0 REV__ENSG00000196136|ENST00000393078|SERPINA3 REV__ENSG00000196136|ENST00000393078|SERPINA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2268676757812 3 444.22661 1329.658 0.91638 0.00040708 -1.3357 -0.00059336 -0.41934 -0.00018628 444.2262295482202 47.542 0.58928 47.503 47.28 47.869 -0.038643 101 27 5 0 0 0 0.65891 1 25563 25563 7.4771 1.6936 1 30475000 + 13638 23794 9259 9450 16231 16231 0.006358085647434564 FPMGDRLYIGL 11 Unmodified _FPMGDRLYIGL_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.8385009765625 2 641.336641 1280.65873 1.092 0.00070034 -0.14796 -9.4895E-05 0.94404 0.00060545 641.3364145955526 97.169 0.76259 90.993 90.622 91.384 -6.1757 60 43 2 0 0 0 0.055321 2 64387 64264;64387 49.742 18.815 1 20172000 13639 10927 9260 9451 16232;16233 16233 0.029626032138139635 FPMKALGY 8 Unmodified _FPMKALGY_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.74462890625 2 463.743857 925.47316 1.1094 0.00051446 0.15947 7.3952E-05 1.2688 0.00058842 463.74393114086394 58.25 0.3829 52.222 52.156 52.539 -6.0275 36 20 2 0 0 0 0.46494 1 37389 37389 38.151 20.016 1 17327000 13640 10167 9261 9452 16234 16234 0.007442454850092872 FPMPRPRPKAY 11 Unmodified _FPMPRPRPKAY_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MSMS AL20221201_MKP_PDAC_01 4 453.9173889160156 3 453.916658 1358.72815 NaN NaN NaN NaN NaN NaN NaN 34.614 1 30.519 30.019 31.019 -4.0951 0 0 0 0.76967 1 19978 19978 13.519 7.6505 1 13641 10769 9262 9453 16235 16235 0.06313106953257375 FPMPRPRPKAY 11 Unmodified _FPMPRPRPKAY_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MSMS AL20221201_MKP_PDAC_01 4 453.9178161621094 3 453.916658 1358.72815 NaN NaN NaN NaN NaN NaN NaN 34.819 1 30.724 30.224 31.224 -4.0951 0 0 0 0.76967 1 20120 20120 13.519 6.4816 1 13642 10769 9262 9453 16236 16236 0.06313106953257375 FPMTHGNTGF 10 Oxidation (M) _FPM(Oxidation (M))THGNTGF_ FPM(1)THGNTGF FPM(50)THGNTGF 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7446899414062 2 562.745116 1123.47568 -0.34032 -0.00019151 -0.13212 -7.4348E-05 -0.47243 -0.00026586 562.7450825312065 34.514 1.1451 34.514 34.14 35.285 0 187 59 5 0 0 0 0.087164 3 18341 18013;18130;18341 49.527 29.424 1 25383000 13643 9909;15126 9263 9454 16237;16238;16239 16239 1595 -0.08111950847978733 FPMTHGNTGF 10 Oxidation (M) _FPM(Oxidation (M))THGNTGF_ FPM(1)THGNTGF FPM(81)THGNTGF 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7451782226562 2 562.745116 1123.47568 -0.11727 -6.5991E-05 -0.27511 -0.00015481 -0.39237 -0.00022081 562.7450685922112 34.674 1.9593 34.483 33.865 35.824 -0.19132 293 86 5 0 0 0 0.014503 6 17986 17986;18095;18208;18312;18410;18516 80.676 55.277 1 307360000 13644 9909;15126 9263 9454 16240;16241;16242;16243;16244;16245 16240 1595 -0.08111950847978733 FPMTHGNTGF 10 Oxidation (M) _FPM(Oxidation (M))THGNTGF_ FPM(1)THGNTGF FPM(81)THGNTGF 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.7454833984375 2 562.745116 1123.47568 0.52798 0.00029712 -0.48493 -0.00027289 0.043048 2.4225E-05 562.744937798021 34.605 1.654 34.632 33.95 35.604 0.027401 218 77 4 0 0 0 0.014503 5 18256 18038;18147;18256;18369;18470 80.676 56.655 1 32062000 13645 9909;15126 9263 9454 16246;16247;16248;16249;16250 16248 1595 -0.08111950847978733 FPMTHGNTGF 10 Oxidation (M) _FPM(Oxidation (M))THGNTGF_ FPM(1)THGNTGF FPM(70)THGNTGF 0 0 1 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7455444335938 2 562.745116 1123.47568 0.98005 0.00055152 -0.56923 -0.00032033 0.41082 0.00023119 562.7449213378144 39.132 1.5719 34.681 34.01 35.582 -4.4509 401 102 5 0 0 0 0.025861 4 23198 23060;23198;23337;23466 70.332 44.933 1 814580000 13646 9909;15126 9263 9454 16251;16252;16253;16254 16252 1595 -0.08111950847978733 FPMTHGNTGF 10 Unmodified _FPMTHGNTGF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7470703125 2 554.747659 1107.48076 NaN NaN NaN NaN NaN NaN NaN 43.837 1 43.521 43.021 44.021 -0.31585 0 0 0 0.016839 1 23338 23338 96.936 50.915 1 13647 9909;15126 9263 9455 16255 16255 -0.06867646985347164 FPMTHGNTGF 10 Unmodified _FPMTHGNTGF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7471313476562 2 554.747659 1107.48076 NaN NaN NaN NaN NaN NaN NaN 43.372 1 43.357 42.857 43.857 -0.015667 0 0 0 0.018269 1 23244 23244 65.474 40.074 1 13648 9909;15126 9263 9455 16256 16256 -0.06867646985347164 FPMTHGNTGF 10 Unmodified _FPMTHGNTGF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7471923828125 2 554.747659 1107.48076 NaN NaN NaN NaN NaN NaN NaN 43.797 1 43.781 43.281 44.281 -0.015667 0 0 0 3.1876E-06 1 23479 23479 121.53 74.613 1 13649 9909;15126 9263 9455 16257 16257 -0.06867646985347164 FPMTHGNTGF 10 Unmodified _FPMTHGNTGF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7481079101562 2 554.747659 1107.48076 1.0819 0.00060019 -0.46224 -0.00025643 0.61968 0.00034377 554.7476356959628 49.641 1.4103 44.102 43.413 44.824 -5.5391 286 91 4 0 0 0 3.9249E-05 7 30746 30610;30746;30870;31001;31140;31282;31426 121.53 93.04 1 904180000 13650 9909;15126 9263 9455 16258;16259;16260;16261;16262;16263;16264 16259 -0.06867646985347164 FPMTMDEKY 9 2 Oxidation (M) _FPM(Oxidation (M))TM(Oxidation (M))DEKY_ FPM(1)TM(1)DEKY FPM(80)TM(80)DEKY 0 0 2 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2465209960938 2 597.2463 1192.47805 -0.44828 -0.00026774 -0.2686 -0.00016042 -0.71689 -0.00042816 597.2464007708219 29.09 1.0774 29.09 28.683 29.76 0 177 57 5 0 0 0 0.010301 4 15171 14969;15070;15171;15273 79.596 58.725 1 24016000 13651 621 9264 9456 16265;16266;16267;16268 16267 93;94 -0.11049283225179352 FPMTMDEKY 9 2 Oxidation (M) _FPM(Oxidation (M))TM(Oxidation (M))DEKY_ FPM(1)TM(1)DEKY FPM(83)TM(83)DEKY 0 0 2 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2462158203125 2 597.2463 1192.47805 0.095389 5.6971E-05 -0.90299 -0.00053931 -0.8076 -0.00048234 597.2463817781008 33.035 0.77806 29.179 28.753 29.531 -3.8562 102 46 3 0 0 0 0.0093064 4 18990 18718;18859;18990;19112 83.429 59.361 1 29813000 13652 621 9264 9456 16269;16270;16271;16272 16271 93;94 -0.11049283225179352 FPMTMDEKY 9 Unmodified _FPMTMDEKY_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.250732421875 2 581.251385 1160.48822 0.96652 0.00056179 -0.98596 -0.00057309 -0.019435 -1.1297E-05 581.2508446469514 54.978 0.80745 49.109 48.638 49.445 -5.869 118 50 3 0 0 0 0.0090383 4 34953 34687;34824;34953;35106 103.42 67.292 1 47098000 13653 621 9264 9457 16273;16274;16275;16276 16275 -0.08560675499938952 FPMTSFRRLCS 11 Unmodified _FPMTSFRRLCS_ 0 0 0 REV__ENSG00000188153|ENST00000328300|COL4A5 REV__ENSG00000188153|ENST00000328300|COL4A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8326416015625 2 672.8312 1343.64785 NaN NaN NaN NaN NaN NaN NaN 64.48 1 63.994 63.494 64.494 -0.48512 0 0 0 0.94002 1 35179 35179 2.4985 0.84587 1 + 13654 23691 9265 9458 16277 16277 -0.010231224320932597 FPNAIEHTL 9 Unmodified _FPNAIEHTL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2721557617188 2 521.271824 1040.5291 0.60878 0.00031734 -0.16374 -8.5355E-05 0.44503 0.00023198 521.2716588648458 50.017 0.76062 50.017 49.629 50.389 0 106 35 5 0 0 0 0.001066 3 27497 27497;27609;27725 139.14 99.894 1 76243000 13655 4284 9266 9459 16278;16279;16280 16278 0.010451699261921021 FPNAIEHTL 9 Unmodified _FPNAIEHTL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2716064453125 2 521.271824 1040.5291 0.76599 0.00039929 -0.49566 -0.00025837 0.27033 0.00014091 521.2714198731262 50.509 0.932 50.096 49.547 50.479 -0.41351 179 45 5 0 0 0 0.0086722 3 27182 27000;27182;27287 103.35 74.272 1 123070000 13656 4284 9266 9459 16281;16282;16283 16282 0.010451699261921021 FPNAIEHTL 9 Unmodified _FPNAIEHTL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2720947265625 2 521.271824 1040.5291 1.2994 0.00067732 1.0982 0.00057245 2.3975 0.0012498 521.2714805282194 50.1 0.60896 50.051 49.743 50.352 -0.048828 77 29 4 0 0 0 0.0082475 2 27104 27104;27209 92.653 58.252 1 4809500 13657 4284 9266 9459 16284;16285 16284 0.010451699261921021 FPNAIEHTL 9 Unmodified _FPNAIEHTL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47063082-47065999:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2724609375 2 521.271824 1040.5291 0.56167 0.00029278 0.11402 5.9436E-05 0.67569 0.00035222 521.2718820830872 56.294 1.0705 50.317 49.665 50.736 -5.9769 166 62 4 0 0 0 0.00065891 4 35801 35667;35801;35932;36060 142.08 107.68 1 673250000 13658 4284 9266 9459 16286;16287;16288;16289 16287 0.010451699261921021 FPNALVTKL 9 Unmodified _FPNALVTKL_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.8030090332031 2 501.80276 1001.59097 0.26883 0.0001349 0.41447 0.00020798 0.6833 0.00034288 501.80296550795407 61.755 0.33396 61.722 61.514 61.848 -0.032787 52 16 4 0 0 0 0.0082981 2 33746 33645;33746 96.936 47.003 1 25343000 13659 7825 9267 9460 16290;16291 16291 0.09023521345329755 FPNALVTKL 9 Unmodified _FPNALVTKL_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.8028259277344 2 501.80276 1001.59097 0.86546 0.00043429 1.2906 0.00064762 2.156 0.0010819 501.80375186176815 67.131 0.61244 60.955 60.826 61.438 -6.1757 105 34 4 0 0 0 0.012228 2 43681 43681;43821 74.2 40.097 1 53091000 13660 7825 9267 9460 16292;16293 16292 0.09023521345329755 FPNALVTKL 9 Unmodified _FPNALVTKL_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MSMS AL20221201_MKP_PDAC_01 4 501.8036499023438 2 501.80276 1001.59097 NaN NaN NaN NaN NaN NaN NaN 69.163 1 62.987 62.487 63.487 -6.1757 0 0 0 0.06887 1 45161 45161 51.415 27.395 1 13661 7825 9267 9460 16294 16294 0.09023521345329755 FPNANFSHFI 10 Unmodified _FPNANFSHFI_ 0 0 0 REV__ENST00000367942.3_1_1:161928851-161929010:+|nuORF REV__ENST00000367942.3_1_1:161928851-161929010:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5494384765625 3 398.529458 1192.56654 NaN NaN NaN NaN NaN NaN NaN 20.937 1 20.937 20.437 21.437 0 0 0 0 0.98692 1 10561 10561 2.086 0 1 + 13662 26000 9268 9461 16295 16295 -0.022037388082026155 FPNDPHVQY 9 Unmodified _FPNDPHVQY_ 0 0 0 ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 ENSG00000155903|ENST00000286364|RASA2 ENSG00000155903|ENST00000286364|RASA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7590942382812 2 558.759081 1115.50361 0.7434 0.00041538 -0.90195 -0.00050397 -0.15855 -8.8593E-05 558.7589289018415 38.812 0.82253 38.812 38.44 39.263 0 105 38 4 0 0 0 0.015688 3 20726 20613;20726;20837 67.838 51.991 1 8248700 13663 6417 9269 9462 16296;16297;16298 16297 -0.0495230459623599 FPNDPHVQY 9 Unmodified _FPNDPHVQY_ 0 0 0 ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 ENSG00000155903|ENST00000286364|RASA2 ENSG00000155903|ENST00000286364|RASA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.76025390625 2 558.759081 1115.50361 0.72943 0.00040758 -0.6943 -0.00038795 0.035124 1.9626E-05 558.759065161551 44.278 0.74122 39.426 39.005 39.746 -4.852 77 51 2 0 0 0 0.014182 1 27112 27112 69.338 48.924 1 23250000 13664 6417 9269 9462 16299 16299 -0.0495230459623599 FPNENQVVF 9 Unmodified _FPNENQVVF_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.268310546875 2 547.269281 1092.52401 1.0118 0.00055372 1.1513 0.00063008 2.1631 0.0011838 547.2699235365303 70.981 0.58363 64.805 64.461 65.045 -6.1757 60 29 3 0 0 0 0.094149 1 46419 46419 34.402 13.531 1 39773000 13665 540 9270 9463 16300 16300 -0.018551339364194064 FPNFDKQEL 9 Unmodified _FPNFDKQEL_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2847900390625 2 569.282389 1136.55022 0.59435 0.00033835 0.50103 0.00028523 1.0954 0.00062358 569.2830742847545 53.8 0.33901 53.336 53.211 53.55 -0.46384 34 16 3 0 0 0 0.34999 1 29084 29084 14.838 4.7643 1 2058800 13666 6951 9271 9464 16301 16301 -0.012588647649408813 FPNGLHCTV 9 Carbamidomethyl (C) _FPNGLHC(Carbamidomethyl (C))TV_ FPNGLHC(1)TV FPNGLHC(56)TV 0 1 0 ENSG00000052344|ENST00000317508|PRSS8;nc|ENSG00000052344|Q16651-2|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7509155273438 2 522.750201 1043.48585 0.51213 0.00026772 0.23891 0.00012489 0.75104 0.00039261 522.7500698759013 45.281 0.60577 40.326 39.919 40.524 -4.9549 61 40 3 0 0 0 0.028475 1 27762 27762 56.177 29.293 1 18883000 13667 738 9272 9465 16302 16302 58 -0.034153431227423425 FPNGLHCTV 9 Carbamidomethyl (C) _FPNGLHC(Carbamidomethyl (C))TV_ 0 1 0 ENSG00000052344|ENST00000317508|PRSS8;nc|ENSG00000052344|Q16651-2|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.750201 1043.48585 0.30543 0.00015966 0.13612 7.1155E-05 0.44154 0.00023082 522.7500559701921 40.27 0.57174 39.973 39.668 40.24 -0.29716 -0.17645 -5.3594E-05 NaN 56.177 32 26 2 NaN NaN NaN NaN 0 NaN NaN 0 646520 13668 738 9272 9465 58 -0.034153431227423425 FPNHKETDDCD 11 Unmodified _FPNHKETDDCD_ 0 0 0 nc|ENSG00000189195|Q5XKL5|BTBD8;nc|ENSG00000189195|Q5XKL5-4|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7993469238281 3 440.843553 1319.50883 NaN NaN NaN NaN NaN NaN NaN 4.8245 1 4.7517 4.2517 5.2517 -0.072869 0 0 0 0.9434 1 2385 2385 0.073264 0.073264 1 13669 16469 9273 9466 16303 16303 -0.13814413586578667 FPNIASATKF 10 Unmodified _FPNIASATKF_ 0 0 0 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2958374023438 2 548.295299 1094.57605 0.30612 0.00016784 0.64281 0.00035245 0.94893 0.00052029 548.2957199593103 59.933 0.49653 59.88 59.518 60.014 -0.053059 39 24 2 0 0 0 0.1028 2 32625 32625;32737 46.022 32.98 1 3726100 13670 1785 9274 9467 16304;16305 16304 0.03254029477329823 FPNIDMGPQLK 11 Unmodified _FPNIDMGPQLK_ 0 0 0 nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF nc|ENSG00000105426|Q13332-3|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3246459960938 2 630.326273 1258.63799 -0.14658 -9.2396E-05 0.10429 6.5735E-05 -0.042297 -2.6661E-05 630.3262723672069 55.674 0.53452 55.606 55.317 55.852 -0.068737 46 27 2 0 0 0 0.67892 1 30203 30203 7.609 0.88579 1 8877800 13671 2319 9275 9468 16306 16306 0.019020128341480813 FPNIDREKAM 10 Unmodified _FPNIDREKAM_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000555204.1_1_14:102486373-102493771:+|nuORF ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5419311523438 3 407.541257 1219.60194 0.84254 0.00034337 -1.2656 -0.0005158 -0.4231 -0.00017243 407.5414143264786 39.6 0.27004 35.149 34.98 35.25 -4.4509 28 16 3 0 0 0 0.41271 1 23521 23521 20.871 8.6964 1 14148000 13672 9907 9276 9469 16307 16307 0.000925556573065478 FPNIGVEKF 9 Unmodified _FPNIGVEKF_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7852172851562 2 525.784567 1049.55458 0.63717 0.00033501 -1.4483 -0.00076152 -0.81117 -0.0004265 525.7836819316836 62.236 0.36397 61.749 61.592 61.956 -0.48764 40 16 3 0 0 0 0.01085 1 33892 33892 78.06 34.288 1 4073600 13673 4983;12784 9277 9470 16308 16308 0.031786444485987886 FPNIGVEKF 9 Unmodified _FPNIGVEKF_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 525.784567 1049.55458 0.2369 0.00012456 -1.3098 -0.00068866 -1.0729 -0.0005641 525.7840100707831 61.877 0.13525 61.845 61.753 61.888 -0.032787 0.047846 0.00010433 NaN 78.06 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2914700 13674 4983;12784 9277 9470 0.031786444485987886 FPNIIDVSI 9 Unmodified _FPNIIDVSI_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2831115722656 2 509.2844 1016.55425 NaN NaN NaN NaN NaN NaN NaN 94.98 1 94.612 94.112 95.112 -0.36814 0 0 0 0.82739 1 51883 51883 4.3292 0 1 13675 1678 9278 9471 16309 16309 0.04663224728756177 FPNIPGKSL 9 Unmodified _FPNIPGKSL_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7790832519531 2 486.779285 971.544017 NaN NaN NaN NaN NaN NaN NaN 51.141 1 50.728 50.228 51.228 -0.41351 0 0 0 0.076083 1 27559 27559 49.554 17.249 1 13676 5547 9279 9472 16310 16310 0.057106617941940385 FPNIPGKSL 9 Unmodified _FPNIPGKSL_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7793579101562 2 486.779285 971.544017 0.5922 0.00028827 0.063363 3.0844E-05 0.65556 0.00031911 486.7792349720361 50.945 0.69662 50.891 50.53 51.226 -0.053871 98 34 4 0 0 0 0.011291 5 27520 27405;27415;27520;27621;27728 76.825 32.418 1 22451000 13677 5547 9279 9472 16311;16312;16313;16314;16315 16313 0.057106617941940385 FPNIPGKSL 9 Unmodified _FPNIPGKSL_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7795104980469 2 486.779285 971.544017 0.57915 0.00028192 -0.036365 -1.7702E-05 0.54279 0.00026422 486.77930739221557 56.771 0.65314 50.795 50.446 51.1 -5.9769 87 38 3 0 0 0 0.013609 3 36264 36137;36264;36397 70.332 39.351 1 123030000 13678 5547 9279 9472 16316;16317;16318 16317 0.057106617941940385 FPNIRSAEL 9 Unmodified _FPNIRSAEL_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;ENST00000537136.1_1_12:31255149-31256026:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7847290039062 2 523.785099 1045.55564 0.34362 0.00017998 0.44513 0.00023315 0.78875 0.00041313 523.784686222545 53.483 0.24774 53.031 52.9 53.148 -0.45173 23 11 3 0 0 0 0.05483 1 28953 28953 43.772 7.6454 1 2879600 13679 479 9280 9473 16319 16319 0.03468858817495857 FPNIVIKGSEL 11 Unmodified _FPNIVIKGSEL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8502807617188 2 608.850438 1215.68632 0.5354 0.00032598 0.083926 5.1098E-05 0.61932 0.00037707 608.8502960402493 68.336 0.28561 67.856 67.705 67.99 -0.48071 36 12 4 0 0 0 0.096677 2 37308 37308;37410 59.052 31.829 1 4490600 13680 8403 9281 9474 16320;16321 16320 0.08710829745700721 FPNIVIKGSEL 11 Unmodified _FPNIVIKGSEL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8507080078125 2 608.850438 1215.68632 0.44804 0.00027279 0.92039 0.00056038 1.3684 0.00083317 608.8507424494588 67.788 0.32936 67.806 67.668 67.997 0.018036 45 15 4 0 0 0 0.0033438 1 37201 37201 93.938 38.435 1 13592000 13681 8403 9281 9474 16322 16322 0.08710829745700721 FPNIVIKGSEL 11 Unmodified _FPNIVIKGSEL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8515625 2 608.850438 1215.68632 0.98908 0.0006022 1.3118 0.00079866 2.3008 0.0014009 608.8510251802451 79.229 0.92035 73.054 72.5 73.421 -6.1757 76 52 2 0 0 0 4.9054E-11 5 51672 51529;51672;51799;51924;52062 154.75 59.039 1 27158000 13682 8403 9281 9474 16323;16324;16325;16326;16327 16324 0.08710829745700721 FPNKETMNIHF 11 Unmodified _FPNKETMNIHF_ 0 0 0 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.8921508789062 3 459.892179 1376.65471 0.16317 7.5041E-05 1.0881 0.00050039 1.2512 0.00057543 459.89238256950756 51.551 0.67976 51.497 51.286 51.966 -0.053871 88 33 3 0 0 0 0.23243 3 27857 27857;27978;28075 30.354 20.793 1 3504400 13683 1108 9282 9475 16328;16329;16330 16328 -0.018554862798964677 FPNKETMNIHF 11 Unmodified _FPNKETMNIHF_ 0 0 0 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.8925476074219 3 459.892179 1376.65471 0.72048 0.00033134 -0.40299 -0.00018533 0.31749 0.00014601 459.8921321309782 57.052 0.71197 51.075 50.615 51.327 -5.9769 88 41 3 0 0 0 0.0057099 4 36218 36218;36349;36504;36640 74.094 53.222 1 37230000 13684 1108 9282 9475 16331;16332;16333;16334 16331 -0.018554862798964677 FPNKETMNIHF 11 Oxidation (M) _FPNKETM(Oxidation (M))NIHF_ FPNKETM(1)NIHF FPNKETM(42)NIHF 0 0 1 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2241821289062 3 465.223817 1392.64962 0.42528 0.00019785 0.25389 0.00011812 0.67917 0.00031597 465.2243270761726 45.138 0.82145 40.286 39.879 40.701 -4.852 145 55 4 0 0 0 0.10354 1 27736 27736 42.068 27.23 1 42828000 13685 1108 9282 9476 16335 16335 182 -0.030997901425052987 FPNKQGYVL 9 Unmodified _FPNKQGYVL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2906494140625 2 533.290017 1064.56548 -0.00014448 -7.7052E-08 0.3198 0.00017055 0.31965 0.00017047 533.2901335310585 45.707 0.53647 45.382 45.046 45.583 -0.32425 60 31 3 0 0 0 0.010818 3 24507 24287;24393;24507 78.149 50.521 1 17593000 13686 6327 9283 9477 16336;16337;16338 16338 0.03578046822894976 FPNKQGYVL 9 Unmodified _FPNKQGYVL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.290283203125 2 533.290017 1064.56548 0.052992 2.826E-05 0.38092 0.00020314 0.43391 0.0002314 533.2902009186436 45.389 0.5344 45.361 45.107 45.642 -0.028011 39 28 2 0 0 0 0.00856 2 24417 24292;24417 100.37 64.327 1 10281000 13687 6327 9283 9477 16339;16340 16340 0.03578046822894976 FPNLARVL 8 Unmodified _FPNLARVL_ 0 0 0 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2824096679688 2 465.281995 928.549437 0.35323 0.00016435 -0.36036 -0.00016767 -0.007125 -3.3151E-06 465.281926856528 69.896 1.0932 69.927 69.514 70.607 0.030914 117 54 3 0 0 0 0.18881 3 38525 38404;38525;38643 74.396 17.855 1 13304000 13688 6766 9284 9478 16341;16342;16343 16342 0.08230385376668892 FPNLAVIR 8 Unmodified _FPNLAVIR_ 0 0 0 ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2816467285156 2 465.281995 928.549437 0.35323 0.00016435 -0.36036 -0.00016767 -0.007125 -3.3151E-06 465.281926856528 69.896 1.0932 69.927 69.514 70.607 0.030914 117 54 3 0 0 0 0.40035 1 38296 38296 44.407 0 1 13304000 13689 566 9285 9479 16344 16344 0.08230385376657523 FPNLHHQLF 9 Unmodified _FPNLHHQLF_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.8009643554688 2 576.801083 1151.58761 1.2396 0.00071498 0.44425 0.00025624 1.6838 0.00097122 576.8016710085044 87.825 1.2948 81.649 80.982 82.276 -6.1757 258 71 5 0 0 0 0.15471 1 58279 58279 23.148 0 1 235860000 13690 7420 9286 9480 16345 16345 0.017882712913205978 FPNNVATVL 9 Unmodified _FPNNVATVL_ 0 0 0 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7693786621094 2 487.768917 973.523281 0.66999 0.0003268 0.14221 6.9364E-05 0.8122 0.00039616 487.76896047849795 67.571 0.65392 67.089 66.716 67.37 -0.48219 59 28 3 0 0 0 0.016184 1 36931 36931 67.344 38.857 1 8308800 13691 5775 9287 9481 16346 16346 0.035460714145074235 FPNRILFQEF 10 Unmodified _FPNRILFQEF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.848876953125 2 655.84823 1309.68191 0.70376 0.00046156 -0.52324 -0.00034317 0.18052 0.00011839 655.8478385498759 79.114 0.45502 79.169 78.936 79.391 0.05497 63 17 5 0 0 0 3.9377E-05 2 43637 43637;43751 118.07 0 1 68071000 13692 2308 9288 9482 16347;16348 16347 0.03945365322806538 FPNRILFQEF 10 Unmodified _FPNRILFQEF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8474731445312 2 655.84823 1309.68191 1.1439 0.00075021 0.14575 9.5591E-05 1.2896 0.0008458 655.8481650454584 96.754 0.67937 90.578 90.166 90.845 -6.1757 115 39 4 0 0 0 0.0075265 3 63924 63924;64045;64168 106.94 0 1 135530000 13693 2308 9288 9482 16349;16350;16351 16349 0.03945365322806538 FPNRLGFEF 9 Unmodified _FPNRLGFEF_ 0 0 0 ENSG00000140987|ENST00000396852|ZSCAN32;nc|ENSG00000140987|Q9NX65-3|ZSCAN32;nc|ENSG00000140987|Q9NX65-2|ZSCAN32 ENSG00000140987|ENST00000396852|ZSCAN32 ENSG00000140987|ENST00000396852|ZSCAN32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7867431640625 2 563.787641 1125.56073 0.57232 0.00032267 -0.069483 -3.9173E-05 0.50284 0.00028349 563.7876420520726 73.228 0.38978 73.27 73.127 73.516 0.041725 38 17 3 0 0 0 0.047788 1 40349 40349 45.7 16.618 1 4602800 13694 5290 9289 9483 16352 16352 0.002971626801581806 FPNRVVFQEF 10 Unmodified _FPNRVVFQEF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.832763671875 2 641.83258 1281.65061 0.44291 0.00028427 -1.1646 -0.00074746 -0.72167 -0.00046319 641.8317957017308 68.018 0.38247 67.535 67.299 67.681 -0.48218 39 17 3 0 0 0 0.1899 1 37123 37123 34.932 13.185 1 3999800 13695 1800 9290 9484 16353 16353 0.021047922886964443 FPNRVVFQEF 10 Unmodified _FPNRVVFQEF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3366088867188 2 641.83258 1281.65061 0.40208 0.00025807 -0.35817 -0.00022988 0.043913 2.8185E-05 641.832236126465 67.436 0.53013 67.454 67.197 67.727 0.018028 82 26 4 0 0 0 0.0023019 2 36956 36956;37062 106.94 68.966 1 60332000 13696 1800 9290 9484 16354;16355 16354 0.021047922886964443 FPNRVVFQEF 10 Unmodified _FPNRVVFQEF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2251586914062 3 428.224146 1281.65061 NaN NaN NaN NaN NaN NaN NaN 45.908 1 45.88 45.38 46.38 -0.028011 0 0 0 0.96981 1 24684 24684 3.8763 2.1341 1 13697 1800 9290 9484 16356 16356 0.021047922886964443 FPNRVVFQEF 10 Unmodified _FPNRVVFQEF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.8338623046875 2 641.83258 1281.65061 0.81972 0.00052612 1.0378 0.00066608 1.8575 0.0011922 641.8327610910737 81.628 1.3116 75.452 74.732 76.044 -6.1757 163 74 3 0 0 0 1.5072E-15 6 53410 53152;53279;53410;53535;53667;53804 173.69 118.91 1 43694000 13698 1800 9290 9484 16357;16358;16359;16360;16361;16362 16359 0.021047922886964443 FPNSLDQTDM 10 Oxidation (M) _FPNSLDQTDM(Oxidation (M))_ FPNSLDQTDM(1) FPNSLDQTDM(62) 0 0 1 ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2516479492188 2 592.250428 1182.4863 0.45052 0.00026682 0.96365 0.00057072 1.4142 0.00083755 592.250193776331 38.788 0.43488 38.788 38.535 38.97 0 34 19 2 0 0 0 0.043225 1 20669 20669 61.602 44.489 1 3764200 13699 8819 9291 9485 16363 16363 1489 -0.09764012984237525 FPNTGARIM 9 Unmodified _FPNTGARIM_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MSMS AL20221201_MKP_PDAC_01 4 503.7626342773438 2 503.760569 1005.50659 NaN NaN NaN NaN NaN NaN NaN 47.898 1 42.664 42.164 43.164 -5.2339 0 0 0 0.12343 1 29780 29780 39.95 11.463 1 13700 1943;1893 9292 9486 16364 16364 0.004052472569242127 FPNTNRWFL 9 Unmodified _FPNTNRWFL_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;ENST00000421044.1_1_3:40637993-40638476:-|nuORF;ENST00000434365.1_1_X:114937583-114938135:+|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8057861328125 2 597.806365 1193.59818 NaN NaN NaN NaN NaN NaN NaN 100.65 1 100.6 100.1 101.1 -0.04216 0 0 0 0.82015 1 55912 55912 5.2307 0 1 13701 10781 9293 9487 16365 16365 0.009122539457393941 FPNYEEENI 9 Unmodified _FPNYEEENI_ 0 0 0 REV__ENSG00000166828|ENST00000300061|SCNN1G REV__ENSG00000166828|ENST00000300061|SCNN1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7532958984375 2 577.753661 1153.49277 -0.31783 -0.00018363 -0.37932 -0.00021915 -0.69715 -0.00040278 577.753438188926 33.592 0.80108 33.592 33.544 34.345 0 91 46 3 0 0 0 0.1773 1 17854 17854 25.399 0.72543 1 8970600 + 13702 22155 9294 9488 16366 16366 -0.07783751761189706 FPPEANYLF 9 Unmodified _FPPEANYLF_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7694702148438 2 549.26875 1096.52295 0.49024 0.00026928 2.1427 0.0011769 2.6329 0.0014462 549.7712319891112 84.499 0.79552 83.999 83.594 84.39 -0.49961 72 35 3 0 0 0 0.34999 1 46327 46327 14.838 6.9281 1 886350 13703 10449 9295 9489 16367 16367 -0.02145348305339212 FPPESNYLF 9 Unmodified _FPPESNYLF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.266845703125 2 557.266207 1112.51786 1.0323 0.00057527 -0.38629 -0.00021527 0.646 0.00036 557.2659394148847 81.017 0.757 80.525 79.929 80.686 -0.49247 62 35 2 0 0 0 0.12424 1 44384 44384 30.637 6.4266 1 2461600 13704 8229 9296 9490 16368 16368 -0.0338965216797078 FPPESNYLF 9 Unmodified _FPPESNYLF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2637939453125 2 557.266207 1112.51786 0.9848 0.0005488 -1.5986 -0.00089087 -0.61385 -0.00034208 557.2654536109856 81.199 0.32111 80.706 80.676 80.997 -0.49248 28 18 2 0 0 0 0.16226 1 44525 44525 26.884 9.7971 1 1739800 13705 8229 9296 9490 16369 16369 -0.0338965216797078 FPPESNYLF 9 Unmodified _FPPESNYLF_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2677001953125 2 557.266207 1112.51786 1.2412 0.00069169 1.2782 0.00071231 2.5194 0.001404 557.2667265051716 88.55 1.0642 82.374 81.782 82.846 -6.1757 97 59 2 0 0 0 0.031062 1 58428 58428 54.774 12.956 1 11728000 13706 8229 9296 9490 16370 16370 -0.0338965216797078 FPPFLVFYI 9 Unmodified _FPPFLVFYI_ 0 0 0 REV__ENST00000501011.6_1_11:82784390-82784510:+|nuORF REV__ENST00000501011.6_1_11:82784390-82784510:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.820556640625 2 571.817879 1141.6212 1.3696 0.00078318 -0.91365 -0.00052244 0.45599 0.00026075 571.8177452148378 79.373 1.0942 73.197 72.37 73.464 -6.1757 178 64 4 0 0 0 0.22317 1 51822 51822 20.871 0.45668 1 61651000 + 13707 28011 9297 9491 16371 16371 0.05605880010534747 FPPGQEEAL 9 Unmodified _FPPGQEEAL_ 0 0 0 ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4 ENST00000480590.1_1_1:227921003-227922761:-|nuORF ENST00000480590.1_1_1:227921003-227922761:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2414855957031 2 494.242732 986.470912 0.52133 0.00025766 -0.62812 -0.00031044 -0.10679 -5.2779E-05 494.2414345762068 53.944 0.61384 53.477 53.208 53.822 -0.46664 80 30 4 0 0 0 0.10734 2 29246 29131;29246 32.305 1.6689 1 8763800 13708 1327 9298 9492 16372;16373 16373 -0.022865117191145146 FPPIEKFY 8 Unmodified _FPPIEKFY_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.774169921875 2 520.776211 1039.53787 NaN NaN NaN NaN NaN NaN NaN 32.437 1 32.308 31.808 32.808 -0.12915 0 0 0 0.94061 1 16889 16889 12.532 1.7076 1 13709 627 9299 9493 16374 16374 0.019681435626580424 FPPLFWLF 8 Unmodified _FPPLFWLF_ 0 0 0 REV__ENSG00000205639|ENST00000338315|MFSD2B REV__ENSG00000205639|ENST00000338315|MFSD2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.79052734375 2 533.791664 1065.56878 0.68493 0.00036561 -2.7183 -0.001451 -2.0333 -0.0010854 534.292066782265 100.67 0.19185 94.495 94.431 94.623 -6.1757 21 13 2 0 0 0 0.5245 1 67389 67389 32.454 7.0543 1 48222000 + 13710 24233 9300 9494 16375 16375 0.03861341667538909 FPPPAGREF 9 Unmodified _FPPPAGREF_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2622680664062 2 509.261259 1016.50797 0.54534 0.00027772 0.034895 1.7771E-05 0.58023 0.00029549 509.26136375044877 48.218 0.25306 42.984 42.834 43.087 -5.2339 22 14 2 0 0 0 0.07087 1 29959 29959 39.95 3.9055 1 5774800 13711 3167 9301 9495 16376 16376 0.00037204617331099143 FPPRDEWNDF 10 Unmodified _FPPRDEWNDF_ 0 0 0 nc|ENSG00000073282|Q9H3D4-10|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-9|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63 nc|ENSG00000073282|Q9H3D4-10|TP63 nc|ENSG00000073282|Q9H3D4-10|TP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.7938232421875 2 661.793652 1321.57275 1.3764 0.00091089 0.16438 0.00010878 1.5408 0.0010197 661.7936200906264 70.895 1.2155 70.931 70.401 71.617 0.035507 106 55 2 0 0 0 0.66229 2 38864 38864;39127 4.3292 1.0479 1 3352500 13712 1102 9302 9496 16377;16378 16377 -0.07517265367346226 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3037719726562 2 561.303124 1120.5917 0.98258 0.00055153 0.77512 0.00043508 1.7577 0.00098661 561.303493145677 49.911 0.61493 49.519 49.077 49.692 -0.3923 51 30 2 0 0 0 0.047788 1 26841 26841 45.7 21.679 1 2148000 13713 1216 9303 9497 16379 16379 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3038330078125 2 561.303124 1120.5917 0.74599 0.00041872 0.2765 0.0001552 1.0225 0.00057393 561.3032274279782 50.87 1.2112 50.457 49.605 50.817 -0.41351 149 59 3 0 0 0 0.010301 5 27127 27023;27127;27230;27336;27539 79.596 37.757 1 19200000 13714 1216 9303 9497 16380;16381;16382;16383;16384 16381 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.305908203125 2 561.303124 1120.5917 0.16505 9.2641E-05 0.58511 0.00032843 0.75016 0.00042107 561.8049014589037 51.659 0.54536 51.226 50.948 51.494 -0.43367 68 28 3 0 0 0 0.01958 2 27756 27756;27865 63.961 37.077 1 12462000 13715 1216 9303 9497 16385;16386 16385 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3038330078125 2 561.303124 1120.5917 0.66718 0.00037449 -1.9093 -0.0010717 -1.2421 -0.00069719 561.3012246647862 52.075 0.66497 51.641 51.4 52.064 -0.43367 69 33 3 0 0 0 0.025842 3 28173 28001;28173;28281 57.722 27.085 1 11263000 13716 1216 9303 9497 16387;16388;16389 16388 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.303955078125 2 561.303124 1120.5917 1.5417 0.00086538 0.036414 2.0439E-05 1.5781 0.00088582 561.3030783013508 50.556 0.86757 50.502 49.841 50.708 -0.053871 88 42 3 0 0 0 0.062454 3 27170 27170;27278;27374 41.956 20.209 1 5035800 13717 1216 9303 9497 16390;16391;16392 16390 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8054809570312 2 561.303124 1120.5917 0.48962 0.00027483 -0.026157 -1.4682E-05 0.46346 0.00026014 561.302749245186 56.053 0.82645 50.132 49.587 50.413 -5.9211 96 48 3 0 0 0 0.029718 1 35551 35551 55.503 31.482 1 111830000 13718 1216 9303 9497 16393 16393 0.03622315994402925 FPPREIVTY 9 Unmodified _FPPREIVTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3033447265625 2 561.303124 1120.5917 0.89586 0.00050285 1.0908 0.00061225 1.9866 0.0011151 561.303608039226 56.581 0.48562 50.604 50.357 50.843 -5.9769 49 27 2 0 0 0 0.012228 2 35985 35985;36122 74.2 39.798 1 41523000 13719 1216 9303 9497 16394;16395 16394 0.03622315994402925 FPPSYDSVTR 10 Unmodified _FPPSYDSVTR_ 0 0 0 nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7860107421875 2 584.785296 1167.55604 1.04 0.0006082 -0.12498 -7.3085E-05 0.91506 0.00053511 584.7851108943327 71.787 0.53329 65.611 65.345 65.878 -6.1757 98 29 4 0 0 0 0.29752 1 47096 47096 27.629 1.3607 1 911550000 13720 9207 9304 9498 16396 16396 -0.021037662532989998 FPPTSIYHVF 10 Unmodified _FPPTSIYHVF_ 0 0 0 ENSG00000185803|ENST00000643944|SLC52A2;ENSG00000132517|ENST00000254853|SLC52A1;ENST00000573674.1_1_17:4936254-4937771:-|nuORF;ENST00000575919.1_1_17:4936254-4936696:-|nuORF ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3109741210938 2 604.310949 1206.60735 0.19898 0.00012025 1.0039 0.00060664 1.2028 0.00072689 604.3110937143177 74.801 0.2797 74.847 74.66 74.94 0.045959 24 12 3 0 0 0 0.37389 1 41225 41225 23.148 6.2061 1 3026900 13721 9414 9305 9499 16397 16397 0.012306025114185104 FPPVWNPIAY 10 Unmodified _FPPVWNPIAY_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3138427734375 2 602.313492 1202.61243 0.6064 0.00036524 0.040761 2.4551E-05 0.64716 0.00038979 602.3135545017533 100.27 0.33116 94.092 93.87 94.202 -6.1757 39 20 3 0 0 0 0.017458 1 67003 67003 77.984 57.57 1 21284000 13722 9736 9306 9500 16398 16398 0.019229063740567653 FPPWLETWL 9 Unmodified _FPPWLETWL_ 0 0 0 nc|ENSG00000157214|Q8NFT2-3|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.8304443359375 2 594.808042 1187.60153 -0.11414 -6.7893E-05 -1.3361 -0.00079472 -1.4502 -0.00086261 594.8065573765305 99.833 0.089264 93.658 93.588 93.677 -6.1757 9 6 2 0 0 0 0.19891 1 66547 66547 11.64 3.047 1 36612000 13723 16298 9307 9501 16399 16399 0.015235039997605782 FPQAEKVVL 9 Unmodified _FPQAEKVVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8004150390625 2 515.800217 1029.58588 -0.2342 -0.0001208 0.053144 2.7412E-05 -0.18106 -9.339E-05 515.8002129081628 51.447 0.35513 51.033 50.912 51.267 -0.41351 27 18 2 0 0 0 0.05483 1 27770 27770 43.772 14.691 1 5800000 13724 16188 9308 9502 16400 16400 0.07227217482704873 FPQAEKVVL 9 Unmodified _FPQAEKVVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.800217 1029.58588 0.68786 0.0003548 -0.39855 -0.00020557 0.28931 0.00014923 515.8002273707853 51.041 0.22868 51.041 50.857 51.085 0 0.0041703 -0.00039995 NaN 43.772 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3091300 13725 16188 9308 9502 0.07227217482704873 FPQATRQSL 9 Unmodified _FPQATRQSL_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2828979492188 2 524.282723 1046.55089 -0.34856 -0.00018274 0.52097 0.00027314 0.17242 9.0396E-05 524.2829568736574 33.039 0.52124 32.879 32.622 33.144 -0.15918 47 21 3 0 0 0 0.07087 2 17171 17171;17277 39.95 15.929 1 3246700 13726 5919 9309 9503 16401;16402 16401 0.02947974674748366 FPQDQLTAL 9 Unmodified _FPQDQLTAL_ 0 0 0 nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF nc|ENSG00000146701|P40926-2|MDH2 nc|ENSG00000146701|P40926-2|MDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7716064453125 2 516.771657 1031.52876 0.28206 0.00014576 0.28372 0.00014662 0.56577 0.00029238 516.7718589031095 63.906 0.88306 63.906 63.482 64.365 0 77 37 3 0 0 0 0.36964 1 35655 35655 13.906 6.6168 1 1494400 13727 5790 9310 9504 16403 16403 0.014257502063173888 FPQDQLTAL 9 Unmodified _FPQDQLTAL_ 0 0 0 nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF nc|ENSG00000146701|P40926-2|MDH2 nc|ENSG00000146701|P40926-2|MDH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.771657 1031.52876 0.52987 0.00027382 -0.25642 -0.00013251 0.27345 0.00014131 516.7715725205604 64.524 0.70624 64.039 63.675 64.381 -0.48512 0.066859 -0.00026284 NaN 13.906 46 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1164100 13728 5790 9310 9504 0.014257502063173888 FPQDRVFML 9 Oxidation (M) _FPQDRVFM(Oxidation (M))L_ FPQDRVFM(1)L FPQDRVFM(66)L 0 0 1 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7943725585938 2 584.794609 1167.57467 1.2816 0.00074946 -0.060168 -3.5186E-05 1.2214 0.00071428 584.7946583140557 64.047 0.84228 64.037 63.59 64.432 -0.010529 110 41 3 0 0 0 0.017075 2 35038 34928;35038 66.457 39.573 1 7284700 13729 3160 9311 9505 16404;16405 16405 560 -0.002419278830757321 FPQEEAIIDKY 11 Unmodified _FPQEEAIIDKY_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 676.841064453125 2 676.840268 1351.66598 0.39573 0.00026784 0.45229 0.00030613 0.84801 0.00057397 676.8407029432115 53.889 0.3232 53.889 53.728 54.051 0 37 14 3 0 0 0 0.0011221 1 29880 29880 81.923 52.083 1 4319300 13730 663 9312 9506 16406 16406 0.004216142952373048 FPQEEAIIDKY 11 Unmodified _FPQEEAIIDKY_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MSMS AL20221201_MKP_PDAC_01 4 676.8404541015625 2 676.840268 1351.66598 NaN NaN NaN NaN NaN NaN NaN 60.688 1 54.54 54.04 55.04 -6.1478 0 0 0 1.445E-09 1 39058 39058 111.33 82.84 1 13731 663 9312 9506 16407 16407 0.004216142952373048 FPQEFIICF 9 Carbamidomethyl (C) _FPQEFIIC(Carbamidomethyl (C))F_ FPQEFIIC(1)F FPQEFIIC(89)F 0 1 0 ENSG00000081870|ENST00000194214|IFT25 ENSG00000081870|ENST00000194214|IFT25 ENSG00000081870|ENST00000194214|IFT25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.794677734375 2 600.791535 1199.56852 2.1895 0.0013154 2.1699 0.0013037 4.3594 0.0026191 600.7928828639597 100.01 0.19328 99.975 99.88 100.07 -0.036301 21 6 4 0 0 0 0.008678 1 55552 55552 88.904 41.983 1 6820800 13732 1333 9313 9507 16408 16408 120 -0.02328446114597682 FPQEFIICF 9 Carbamidomethyl (C) _FPQEFIIC(Carbamidomethyl (C))F_ FPQEFIIC(1)F FPQEFIIC(59)F 0 1 0 ENSG00000081870|ENST00000194214|IFT25 ENSG00000081870|ENST00000194214|IFT25 ENSG00000081870|ENST00000194214|IFT25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2931518554688 2 600.791535 1199.56852 0.73806 0.00044342 -0.90738 -0.00054515 -0.16933 -0.00010173 600.7913604557473 101.02 0.17491 94.849 94.748 94.923 -6.1757 33 9 5 0 0 0 0.024882 1 67672 67672 58.679 30.192 1 158300000 13733 1333 9313 9507 16409 16409 120 -0.02328446114597682 FPQEGMHQM 9 2 Oxidation (M) _FPQEGM(Oxidation (M))HQM(Oxidation (M))_ FPQEGM(1)HQM(1) FPQEGM(68)HQM(68) 0 0 2 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7291870117188 2 568.728609 1135.44266 1.1244 0.00063946 -0.8626 -0.00049059 0.26176 0.00014887 568.728281844657 19.503 0.853 16.847 16.404 17.257 -2.6564 94 66 2 0 0 0 0.015445 2 10401 10238;10401 68.081 46.334 1 4260000 13734 1298 9314 9508 16410;16411 16411 221;222 -0.11963900962314256 FPQEGMHQM 9 Oxidation (M) _FPQEGM(Oxidation (M))HQM_ FPQEGM(0.992)HQM(0.008) FPQEGM(21)HQM(-21) 0 0 1 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7322998046875 2 560.731151 1119.44775 0.78094 0.0004379 0.16544 9.2767E-05 0.94638 0.00053066 560.7312534683365 28.273 0.71145 25.125 24.843 25.555 -3.1482 55 37 2 0 0 0 0.011671 2 15665 15665;15816 75.761 51.087 2 7789000 13735 1298 9314 9509 16412;16413 16412 221;222 -0.10719597099705425 FPQEGMHQM 9 Oxidation (M) _FPQEGMHQM(Oxidation (M))_ FPQEGM(0.002)HQM(0.998) FPQEGM(-28)HQM(28) 0 0 1 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MSMS AL20221201_MKP_PDAC_01 4 560.7311401367188 2 560.731151 1119.44775 NaN NaN NaN NaN NaN NaN NaN 26.812 1 23.776 23.276 24.276 -3.0365 0 0 0 0.047623 1 14813 14813 58.679 38.225 2 13736 1298 9314 9509 16414 16414 221;222 -0.10719597099705425 FPQEGMHQM 9 Unmodified _FPQEGMHQM_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.733642578125 2 552.733694 1103.45284 1.1835 0.00065415 1.1583 0.00064022 2.3418 0.0012944 552.734580666392 37.64 0.76627 33.271 32.905 33.671 -4.3689 72 45 2 0 0 0 0.011671 2 22177 22177;22309 75.761 41.658 1 7396900 13737 1298 9314 9510 16415;16416 16415 -0.09475293237096594 FPQELAQKI 9 Unmodified _FPQELAQKI_ 0 0 0 ENST00000489156.1_1_6:152599163-152623219:-|nuORF ENST00000489156.1_1_6:152599163-152623219:-|nuORF ENST00000489156.1_1_6:152599163-152623219:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7959594726562 2 537.303124 1072.5917 0.26344 0.00014155 -1.8675 -0.0010034 -1.604 -0.00086185 537.3030490964474 53.163 0.74374 52.711 52.179 52.922 -0.45173 79 37 4 0 0 0 0.039985 2 28624 28517;28624 49.933 15.531 1 44650000 13738 14234 9315 9511 16417;16418 16418 0.058303159943761784 FPQFEPQRY 9 Unmodified _FPQFEPQRY_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.2966918945312 2 606.29583 1210.57711 0.19763 0.00011982 0.52037 0.0003155 0.71801 0.00043532 606.2962712813658 51.865 0.24582 51.432 51.305 51.55 -0.43367 27 12 3 0 0 0 0.012668 1 27979 27979 72.968 47.569 1 4416000 13739 788 9316 9512 16419 16419 -0.01975756153774455 FPQFTWESIR 10 Unmodified _FPQFTWESIR_ 0 0 0 REV__ENST00000455157.6_1_3:8669382-8677538:-|nuORF REV__ENST00000455157.6_1_3:8669382-8677538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.8287353515625 2 655.830037 1309.64552 1.6983 0.0011138 -2.7752 -0.00182 -1.0769 -0.00070625 655.8280994379983 81.351 0.29871 81.411 81.26 81.559 0.059929 18 10 2 0 0 0 0.67459 1 45014 45014 5.7319 1.4026 1 2307300 + 13740 19476 9317 9513 16420 16420 0.0030848842607156257 FPQGPFLVPPP 11 Unmodified _FPQGPFLVPPP_ 0 0 0 REV__nc|ENSG00000111605|Q16630-3|CPSF6 REV__nc|ENSG00000111605|Q16630-3|CPSF6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 598.8303833007812 2 598.329142 1194.64373 -0.42599 -0.00025488 0.55447 0.00033176 0.12849 7.6876E-05 598.3295925801649 84.84 0.47888 78.664 78.445 78.924 -6.1757 44 27 2 0 0 0 0.21722 1 55773 55773 25.399 1.3787 1 20088000 + 13741 18756 9318 9514 16421 16421 0.054194794081240616 FPQGRRWAP 9 Unmodified _FPQGRRWAP_ 0 0 0 ENST00000602795.5_1_20:57569940-57570117:+|nuORF ENST00000602795.5_1_20:57569940-57570117:+|nuORF ENST00000602795.5_1_20:57569940-57570117:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.797607421875 2 557.798875 1113.5832 NaN NaN NaN NaN NaN NaN NaN 36.54 1 36.561 36.061 37.061 0.021545 0 0 0 0.61214 1 19362 19362 7.9102 1.187 1 13742 15826 9319 9515 16422 16422 0.03094806868421074 FPQHGDYQY 9 Unmodified _FPQHGDYQY_ 0 0 0 nc|ENSG00000127526|Q96K37-2|SLC35E1;ENSG00000127526|ENST00000595753|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.748779296875 2 577.748713 1153.48287 0.17696 0.00010224 0.62733 0.00036244 0.80428 0.00046467 577.7489774696214 31.536 0.86922 31.536 31.051 31.92 0 115 42 3 0 0 0 0.078314 2 16441 16441;16545 38.176 29.582 1 4079300 13743 4015 9320 9516 16423;16424 16423 -0.08772894975891177 FPQHGDYQY 9 Unmodified _FPQHGDYQY_ 0 0 0 nc|ENSG00000127526|Q96K37-2|SLC35E1;ENSG00000127526|ENST00000595753|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7501831054688 2 577.748713 1153.48287 0.24934 0.00014405 1.1788 0.00068107 1.4282 0.00082512 577.7496103345418 31.495 0.8159 31.392 31.053 31.869 -0.10269 56 32 2 0 0 0 0.30202 2 16403 16403;16504 17.113 7.039 1 2335400 13744 4015 9320 9516 16425;16426 16425 -0.08772894975891177 FPQHGDYQY 9 Unmodified _FPQHGDYQY_ 0 0 0 nc|ENSG00000127526|Q96K37-2|SLC35E1;ENSG00000127526|ENST00000595753|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7454223632812 2 577.748713 1153.48287 0.6649 0.00038415 -2.3532 -0.0013596 -1.6883 -0.00097542 577.7472254258556 35.478 0.38656 31.285 31.023 31.409 -4.1928 42 23 2 0 0 0 0.15471 1 20623 20623 27.629 9.4938 1 15850000 13745 4015 9320 9516 16427 16427 -0.08772894975891177 FPQHGDYQY 9 Unmodified _FPQHGDYQY_ 0 0 0 nc|ENSG00000127526|Q96K37-2|SLC35E1;ENSG00000127526|ENST00000595753|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 nc|ENSG00000127526|Q96K37-2|SLC35E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7492065429688 2 577.748713 1153.48287 1.2096 0.00069883 -0.42858 -0.00024761 0.78099 0.00045122 577.7480767281547 35.739 0.71491 31.546 31.367 32.082 -4.1928 106 44 3 0 0 0 0.21643 2 21096 20763;21096 21.537 9.8967 1 20347000 13746 4015 9320 9516 16428;16429 16429 -0.08772894975891177 FPQHHLPHTIY 11 Unmodified _FPQHHLPHTIY_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.9076843261719 3 463.906928 1388.69895 -0.39284 -0.00018224 1.4202 0.00065884 1.0274 0.0004766 463.90764797254695 33.735 0.39209 33.576 33.436 33.828 -0.15918 22 15 2 0 0 0 0.73114 1 17631 17631 1.3296 0.82369 1 943910 13747 1157 9321 9517 16430 16430 0.020152859286099556 FPQHHLPHTIY 11 Unmodified _FPQHHLPHTIY_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.9066467285156 3 463.906928 1388.69895 0.11951 5.5442E-05 -0.6363 -0.00029518 -0.51678 -0.00023974 463.9067092411889 33.472 0.80432 33.501 33.253 34.057 0.028931 85 35 4 0 0 0 0.39452 2 17632 17534;17632 21.799 14.762 1 9783900 13748 1157 9321 9517 16431;16432 16432 0.020152859286099556 FPQHLRHLL 9 Unmodified _FPQHLRHLL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5612487792969 3 387.561092 1159.66145 -0.32631 -0.00012646 -0.91691 -0.00035536 -1.2432 -0.00048182 387.56113185057364 36.81 0.44924 36.832 36.599 37.048 0.021545 46 20 3 0 0 0 0.2546 1 19518 19518 19.362 13.959 1 3746500 13749 7545 9322 9518 16433 16433 0.08800239453648828 FPQHTIASL 9 Unmodified _FPQHTIASL_ 0 0 0 ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF ENSG00000183474|ENST00000380729|GTF2H2C ENSG00000183474|ENST00000380729|GTF2H2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2747802734375 2 507.274367 1012.53418 0.31251 0.00015853 2.0449 0.0010373 2.3574 0.0011958 507.27438697007705 47.518 0.6912 47.166 46.74 47.431 -0.3526 63 33 3 0 0 0 0.011671 2 25472 25368;25472 75.761 29.74 1 10335000 13750 5720 9323 9519 16434;16435 16435 0.028414737887942465 FPQHTIASL 9 Unmodified _FPQHTIASL_ 0 0 0 ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF ENSG00000183474|ENST00000380729|GTF2H2C ENSG00000183474|ENST00000380729|GTF2H2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2752685546875 2 507.274367 1012.53418 0.81387 0.00041285 0.031635 1.6048E-05 0.8455 0.0004289 507.2742982118484 53.069 0.63008 47.265 46.822 47.453 -5.8042 57 35 2 0 0 0 0.0090524 3 33554 33320;33437;33554 85.642 24.284 1 37497000 13751 5720 9323 9519 16436;16437;16438 16438 0.028414737887942465 FPQIGQIQY 9 Unmodified _FPQIGQIQY_ 0 0 0 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-3|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.287109375 2 547.287474 1092.5604 NaN NaN NaN NaN NaN NaN NaN 70.254 1 69.775 69.275 70.275 -0.47903 0 0 0 0.18753 1 38422 38422 32.305 3.8186 1 13752 9165 9324 9520 16439 16439 0.017817429602928314 FPQIGQIQY 9 Unmodified _FPQIGQIQY_ 0 0 0 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-3|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.29052734375 2 547.287474 1092.5604 0.29115 0.00015934 2.4432 0.0013371 2.7343 0.0014965 547.2881072816558 69.777 0.32565 69.808 69.611 69.937 0.030914 49 16 4 0 0 0 0.042911 1 38344 38344 48.346 22.947 1 16008000 13753 9165 9324 9520 16440 16440 0.017817429602928314 FPQIGQIQY 9 Unmodified _FPQIGQIQY_ 0 0 0 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-3|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2880859375 2 547.287474 1092.5604 0.69628 0.00038107 -1.9943 -0.0010915 -1.2981 -0.00071041 547.2873135745422 77.602 0.4828 71.426 71.237 71.72 -6.1757 68 27 3 0 0 0 0.019303 2 50719 50719;50845 64.236 28.192 1 57138000 13754 9165 9324 9520 16441;16442 16441 0.017817429602928314 FPQKIAGELY 10 Unmodified _FPQKIAGELY_ 0 0 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000488966.1_1_6:43481054-43483343:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 ENSG00000137207|ENST00000372422|YIPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3167724609375 2 583.316232 1164.61791 0.42355 0.00024706 0.77228 0.00045048 1.1958 0.00069755 583.3164929985415 52.069 0.68385 51.636 51.381 52.064 -0.43367 90 34 3 0 0 0 0.048562 3 28027 28027;28138;28242 67.838 27.888 1 14894000 13755 4912 9325 9521 16443;16444;16445 16443 0.042185851658587126 FPQKIAGELY 10 Unmodified _FPQKIAGELY_ 0 0 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000488966.1_1_6:43481054-43483343:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 ENSG00000137207|ENST00000372422|YIPF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8175048828125 2 583.316232 1164.61791 0.44657 0.00026049 -0.81946 -0.000478 -0.37289 -0.00021751 583.3160250383837 57.947 0.99964 51.919 51.666 52.665 -6.0275 186 55 4 0 0 0 0.020986 3 36998 36998;37136;37269 86.332 31.125 1 93445000 13756 4912 9325 9521 16446;16447;16448 16446 0.042185851658587126 FPQLKLTFDEY 11 Unmodified _FPQLKLTFDEY_ 0 0 0 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 MSMS AL20221201_MKP_PDAC_01 4 700.8582763671875 2 700.85846 1399.70237 NaN NaN NaN NaN NaN NaN NaN 95.489 1 89.313 88.813 89.813 -6.1757 0 0 0 0.00068914 1 63249 63249 107.56 72.631 1 13757 5104 9326 9522 16449 16449 0.01850491191976289 FPQLRATMEAY 11 Oxidation (M) _FPQLRATM(Oxidation (M))EAY_ FPQLRATM(1)EAY FPQLRATM(57)EAY 0 0 1 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.8271484375 2 671.826637 1341.63872 0.51971 0.00034915 -0.45301 -0.00030434 0.066702 4.4812E-05 671.8266101276633 48.12 0.21545 47.767 47.652 47.868 -0.3526 26 10 3 0 0 0 0.02135 1 25796 25796 57.108 35.361 1 5776200 13758 5036 9327 9523 16450 16450 920 -0.01843192516776071 FPQLRATMEAY 11 Oxidation (M) _FPQLRATM(Oxidation (M))EAY_ FPQLRATM(1)EAY FPQLRATM(65)EAY 0 0 1 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.8280029296875 2 671.826637 1341.63872 0.99247 0.00066677 -0.58956 -0.00039608 0.40291 0.00027068 671.8260090859127 53.778 0.26328 47.973 47.863 48.127 -5.8042 27 16 2 0 0 0 0.012739 1 34059 34059 64.927 31.482 1 10385000 13759 5036 9327 9523 16451 16451 920 -0.01843192516776071 FPQMGRFTL 9 Oxidation (M) _FPQM(Oxidation (M))GRFTL_ FPQM(1)GRFTL FPQM(44)GRFTL 0 0 1 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7828979492188 2 556.781502 1111.54845 0.49233 0.00027412 -0.64541 -0.00035935 -0.15309 -8.5236E-05 556.7815071685918 54.525 1.0165 54.458 54.062 55.078 -0.066936 89 50 2 0 0 0 0.05483 1 29781 29781 43.772 9.67 1 6082700 13760 2129 9328 9524 16452 16452 370 -0.002861970545609438 FPQMGRFTL 9 Unmodified _FPQMGRFTL_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7847290039062 2 548.784044 1095.55354 0.81992 0.00044996 1.4745 0.00080918 2.2944 0.0012591 548.7846710312539 83.926 1.1684 77.75 77.212 78.381 -6.1757 84 63 2 0 0 0 0.021948 4 55226 55076;55226;55353;55477 61.602 17.249 1 10712000 13761 2129 9328 9525 16453;16454;16455;16456 16454 0.009581068080706245 FPQMGRFTL 9 Unmodified _FPQMGRFTL_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS AL20221201_MKP_PDAC_01 4 548.78564453125 2 548.784044 1095.55354 NaN NaN NaN NaN NaN NaN NaN 84.575 1 78.399 77.899 78.899 -6.1757 0 0 0 0.12343 1 55650 55650 39.95 10.868 1 13762 2129 9328 9525 16457 16457 0.009581068080706245 FPQMMKRKI 9 Unmodified _FPQMMKRKI_ 0 0 0 REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326 REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5533142089844 3 393.556073 1177.64639 1.0254 0.00040356 -0.52665 -0.00020726 0.49876 0.00019629 393.5552292183674 46.976 0.22175 46.943 46.814 47.035 -0.033417 17 10 2 0 0 0 0.30562 1 25311 25311 11.495 3.0504 1 5247600 + 13763 21675 9329 9526 16458 16458 0.0646728826980052 FPQPAAVY 8 Unmodified _FPQPAAVY_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 892.4566040039062 1 892.45633 891.449054 -0.20085 -0.00017925 0.817 0.00072914 0.61615 0.00054988 892.4570516811211 53.544 0.24132 53.092 52.963 53.205 -0.45173 18 11 2 0 0 0 0.48669 1 28964 28964 36.044 9.1605 1 1057200 13764 7770 9330 9527 16459 16459 -0.001012716770105726 FPQPEKESF 9 Unmodified _FPQPEKESF_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1;ENST00000549154.1_1_12:53682884-53683443:+|nuORF ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7694702148438 2 554.769114 1107.52368 NaN NaN NaN NaN NaN NaN NaN 40.298 1 40.298 39.798 40.798 0 0 0 0 0.08368 1 21651 21651 47.594 23.574 1 13765 4712 9331 9528 16460 16460 -0.025785536562807465 FPQPPQQSY 9 Unmodified _FPQPPQQSY_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2623901367188 2 546.261456 1090.50836 -0.01483 -8.1011E-06 2.1151 0.0011554 2.1003 0.0011473 546.2625270694864 43.058 0.56471 42.748 42.404 42.969 -0.31039 33 25 2 0 0 0 0.044011 1 22822 22822 47.749 26.002 1 5260000 13766 7963 9332 9529 16461 16461 -0.03327420453456398 FPQPRLPRF 9 Unmodified _FPQPRLPRF_ 0 0 0 ENSG00000144233|ENST00000272647|AMMECR1L ENSG00000144233|ENST00000272647|AMMECR1L ENSG00000144233|ENST00000272647|AMMECR1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5580139160156 3 386.557459 1156.65055 1.0466 0.00040456 -0.092674 -3.5824E-05 0.9539 0.00036874 386.5574751767275 80.628 0.31413 74.452 74.22 74.534 -6.1757 24 16 2 0 0 0 0.23158 1 52947 52947 14.405 6.7964 1 9881500 13767 5595 9333 9530 16462 16462 0.07848837079359328 FPQQGQISL 9 Unmodified _FPQQGQISL_ 0 0 0 nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.2919006347656 2 509.271824 1016.5291 0.3117 0.00015874 -2.1518 -0.0010959 -1.8401 -0.00093711 509.27174669806266 65.288 0.18524 59.113 59.036 59.221 -6.1757 12 9 2 0 0 0 0.18118 1 42355 42355 18.135 3.5533 1 4586300 13768 2977 9334 9531 16463 16463 0.021491699262014663 FPQQKERQSYL 11 Unmodified _FPQQKERQSYL_ 0 0 0 ENST00000602775.5_1_5:139929747-139930248:-|nuORF ENST00000602775.5_1_5:139929747-139930248:-|nuORF ENST00000602775.5_1_5:139929747-139930248:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 712.3675537109375 2 712.370058 1422.72556 NaN NaN NaN NaN NaN NaN NaN 101.33 1 95.152 94.652 95.652 -6.1757 0 0 0 0.93224 1 67970 67970 5.7319 0.83484 1 13769 15825 9335 9532 16464 16464 0.031109300292882835 FPQSYIDF 8 Unmodified _FPQSYIDF_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7398376464844 2 508.739825 1015.4651 0.18478 9.4005E-05 0.4063 0.0002067 0.59108 0.00030071 508.7399191686705 88.396 0.32032 87.892 87.725 88.046 -0.50423 30 14 3 0 0 0 0.80044 1 48303 48303 6.3541 0 1 1176800 + 13770 19938 9336 9533 16465 16465 -0.04201610230768438 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2707214355469 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.208 1 79.263 78.763 79.763 0.05497 0 0 0 0.019743 1 43759 43759 78.728 11.384 1 13771 4010 9337 9534 16466 16466 0.024109555572977115 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2716064453125 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.385 1 79.44 78.94 79.94 0.05497 0 0 0 0.022863 1 43865 43865 74.929 20.155 1 13772 4010 9337 9534 16467 16467 0.024109555572977115 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2721862792969 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 79.562 1 79.617 79.117 80.117 0.05497 0 0 0 0.025332 1 43965 43965 71.922 14.451 1 13773 4010 9337 9534 16468 16468 0.024109555572977115 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 505.2723083496094 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 86.983 1 80.807 80.307 81.307 -6.1757 0 0 0 0.019743 1 57341 57341 78.728 11.384 1 13774 4010 9337 9534 16469 16469 0.024109555572977115 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 505.2719116210938 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 87.211 1 81.035 80.535 81.535 -6.1757 0 0 0 0.027645 1 57502 57502 69.105 11.634 1 13775 4010 9337 9534 16470 16470 0.024109555572977115 FPQTALVSF 9 Unmodified _FPQTALVSF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000467423.1_1_1:19565574-19565811:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 505.2714233398438 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 87.409 1 81.233 80.733 81.733 -6.1757 0 0 0 0.083082 1 57639 57639 47.749 3.8904 1 13776 4010 9337 9534 16471 16471 0.024109555572977115 FPQVDKAML 9 Oxidation (M) _FPQVDKAM(Oxidation (M))L_ FPQVDKAM(1)L FPQVDKAM(58)L 0 0 1 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7759399414062 2 532.775885 1063.53722 1.1076 0.00059013 2.1929 0.0011683 3.3005 0.0017584 532.7765214904318 60.802 0.4219 54.654 54.462 54.884 -6.1478 40 22 2 0 0 0 0.025842 1 39203 39203 57.722 21.595 1 27115000 13777 7394 9338 9535 16472 16472 1278 0.007989808513002572 FPQVLYLD 8 Unmodified _FPQVLYLD_ 0 0 0 nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000155313|ENST00000400183|USP25 nc|ENSG00000155313|Q9UHP3|USP25 nc|ENSG00000155313|Q9UHP3|USP25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7658081054688 2 497.765843 993.517133 NaN NaN NaN NaN NaN NaN NaN 84.72 1 84.221 83.721 84.721 -0.49961 0 0 0 0.94061 1 46360 46360 12.532 0.89125 1 13778 6381 9339 9536 16473 16473 0.02011553182978787 FPQVVGSL 8 Unmodified _FPQVVGSL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;nc|ENSG00000147874|Q7Z4H7-2|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 423.8887939453125 2 423.739628 845.464704 1.1266 0.00047736 2.4406 0.0010342 3.5671 0.0015115 423.74077300472885 39.364 0.32507 34.913 34.766 35.091 -4.4509 31 19 2 0 0 0 8.7369 1 23472 23472 23.148 0 1 10697000 13779 5888 9340 9537 16474 16474 0.03579014840045147 FPQWSFGRSRS 11 Unmodified _FPQWSFGRSRS_ 0 0 0 REV__ENST00000584999.1_1_17:73662636-73663099:-|nuORF REV__ENST00000584999.1_1_17:73662636-73663099:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.3369140625 2 677.836185 1353.65782 0.50482 0.00034218 -0.83855 -0.0005684 -0.33373 -0.00022621 677.8355918045504 56.113 1.0512 50.136 49.548 50.599 -5.9769 168 61 3 0 0 0 0.42108 1 36004 36004 20.415 0 1 92674000 + 13780 29086 9341 9538 16475 16475 -0.004864751108698329 FPQYPDKEL 9 Unmodified _FPQYPDKEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7847290039062 2 568.784764 1135.55498 0.35975 0.00020462 -0.085605 -4.8691E-05 0.27415 0.00015593 568.7846894666933 45.654 0.52948 45.654 45.445 45.974 0 68 27 4 0 0 0 0.011739 3 24826 24826;24931;25068 72.968 43.886 1 15633000 13781 3829;16172 9342 9539 16476;16477;16478 16476 -0.0073798062219339045 FPQYPDKEL 9 Unmodified _FPQYPDKEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2852172851562 2 568.784764 1135.55498 0.35556 0.00020224 -0.86403 -0.00049144 -0.50847 -0.00028921 569.2852159236505 45.925 0.28376 45.6 45.51 45.793 -0.32425 23 14 2 0 0 0 0.044042 1 24565 24565 43.772 28.934 1 5053700 13782 3829;16172 9342 9539 16479 16479 -0.0073798062219339045 FPQYPDKEL 9 Unmodified _FPQYPDKEL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 568.7863159179688 2 568.784764 1135.55498 NaN NaN NaN NaN NaN NaN NaN 51.481 1 45.832 45.332 46.332 -5.649 0 0 0 0.010253 1 32398 32398 110.55 58.284 1 13783 3829;16172 9342 9539 16480 16480 -0.0073798062219339045 FPRAQDKVHY 10 Unmodified _FPRAQDKVHY_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.8877563476562 3 420.887645 1259.64111 -0.10282 -4.3275E-05 -0.29956 -0.00012608 -0.40238 -0.00016936 420.88756160278575 22.614 0.3061 22.637 22.513 22.819 0.022896 30 12 3 0 0 0 0.67459 1 11494 11494 3.0723 0.57378 1 3630900 13784 5153 9343 9540 16481 16481 0.021670240031880894 FPRAQDKVHY 10 Unmodified _FPRAQDKVHY_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8876037597656 3 420.887645 1259.64111 0.19303 8.1244E-05 0.087706 3.6915E-05 0.28074 0.00011816 420.88766016108343 25.77 0.34007 22.819 22.644 22.984 -2.9511 53 21 3 0 0 0 0.11322 3 14069 14059;14069;14179 33.632 23.317 1 45585000 13785 5153 9343 9540 16482;16483;16484 16483 0.021670240031880894 FPRAQDKVHY 10 Unmodified _FPRAQDKVHY_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 420.887645 1259.64111 -0.10282 -4.3275E-05 -0.29956 -0.00012608 -0.40238 -0.00016936 420.88756160278575 22.614 0.3061 22.637 22.513 22.819 0.022896 -0.091013 -0.0002373 NaN 33.632 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3630900 13786 5153 9343 9540 0.021670240031880894 FPRAYIFI 8 Unmodified _FPRAYIFI_ 0 0 0 REV__nc|ENSG00000196383|P0C623|OR4Q2 REV__nc|ENSG00000196383|P0C623|OR4Q2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7904052734375 2 513.792195 1025.56984 NaN NaN NaN NaN NaN NaN NaN 72.952 1 72.994 72.494 73.494 0.041725 0 0 0 0.97348 1 40184 40184 5.7604 0 1 + 13787 29881 9344 9541 16485 16485 0.05807556036438655 FPRDKLAEL 9 Unmodified _FPRDKLAEL_ 0 0 0 ENST00000595670.5_1_19:4175837-4182530:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;nc|ENSG00000077463|Q8N6T7-2|SIRT6;ENSG00000077463|ENST00000337491|SIRT6 ENST00000595670.5_1_19:4175837-4182530:-|nuORF ENST00000595670.5_1_19:4175837-4182530:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.5417785644531 3 363.541475 1087.60259 NaN NaN NaN NaN NaN NaN NaN 41.103 1 41.103 40.603 41.603 0 0 0 0 0.70001 1 22141 22141 9.544 3.3521 1 13788 1219 9345 9542 16486 16486 0.062297183686723656 FPRDKLAEL 9 Unmodified _FPRDKLAEL_ 0 0 0 ENST00000595670.5_1_19:4175837-4182530:-|nuORF;ENST00000596298.5_1_19:4175573-4182530:-|nuORF;nc|ENSG00000077463|Q8N6T7-2|SIRT6;ENSG00000077463|ENST00000337491|SIRT6 ENST00000595670.5_1_19:4175837-4182530:-|nuORF ENST00000595670.5_1_19:4175837-4182530:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5418701171875 3 363.541475 1087.60259 1.3864 0.000504 -1.0045 -0.00036516 0.38189 0.00013883 363.54078634665126 45.894 0.32062 40.939 40.759 41.08 -4.9549 32 20 2 0 0 0 0.1685 1 28267 28267 24.882 12.707 1 13701000 13789 1219 9345 9542 16487 16487 0.062297183686723656 FPRDWMVMRLL 11 Unmodified _FPRDWMVMRLL_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MSMS AL20221201_MKP_PDAC_01 4 488.5946960449219 3 488.593187 1462.75773 NaN NaN NaN NaN NaN NaN NaN 97.175 1 90.999 90.499 91.499 -6.1757 0 0 0 0.93984 1 64404 64404 2.6312 1.1761 1 13790 1491 9346 9543 16488 16488 0.04486302907071149 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8858642578125 3 388.885241 1163.63389 0.32653 0.00012698 -0.14796 -5.7541E-05 0.17857 6.9443E-05 388.88558611870394 51.527 0.20992 51.527 51.412 51.622 0 13 9 2 0 0 0 0.57331 1 28500 28500 2.9952 0.56046 1 1916600 13791 4867;1153;9937 9347 9544 16489 16489 0.05862291402763731 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8848571777344 3 388.885241 1163.63389 0.44312 0.00017232 -0.076037 -2.957E-05 0.36708 0.00014275 388.8851531842698 52.056 0.39057 51.622 51.418 51.809 -0.43367 76 19 5 0 0 0 0.067618 2 28038 28038;28148 40.725 22.352 1 84770000 13792 4867;1153;9937 9347 9544 16490;16491 16490 0.05862291402763731 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8241577148438 2 582.824224 1163.63389 NaN NaN NaN NaN NaN NaN NaN 52.059 1 51.626 51.126 52.126 -0.43367 0 0 0 0.14754 1 28104 28104 32.786 11.039 1 13793 4867;1153;9937 9347 9544 16492 16492 0.05862291402763731 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8866271972656 3 388.885241 1163.63389 -0.015907 -6.1859E-06 0.93502 0.00036362 0.91911 0.00035743 388.88556899118885 51.737 0.36072 51.678 51.494 51.854 -0.058918 68 17 5 0 0 0 0.15882 2 27955 27955;28052 27.223 8.8501 1 51769000 13794 4867;1153;9937 9347 9544 16493;16494 16493 0.05862291402763731 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8856506347656 3 388.885241 1163.63389 1.34 0.00052112 -1.4393 -0.00055971 -0.099232 -3.859E-05 388.88513735287097 80.196 1.1298 74.02 73.148 74.278 -6.1757 165 67 3 0 0 0 0.43515 1 52508 52508 10.8 2.644 1 100790000 13795 4867;1153;9937 9347 9544 16495 16495 0.05862291402763731 FPRELKEVF 9 Unmodified _FPRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MSMS AL20221201_MKP_PDAC_01 4 388.8856811523438 3 388.885241 1163.63389 NaN NaN NaN NaN NaN NaN NaN 57.416 1 51.389 50.889 51.889 -6.0275 0 0 0 0.1417 1 36720 36720 37.771 10.548 1 13796 4867;1153;9937 9347 9544 16496 16496 0.05862291402763731 FPREPRPKL 9 Unmodified _FPREPRPKL_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5592651367188 3 380.560981 1138.66111 0.22324 8.4958E-05 -0.40059 -0.00015245 -0.17734 -6.749E-05 380.560778277454 26.835 0.30196 26.864 26.659 26.961 0.028664 32 12 3 0 0 0 0.20389 1 13881 13881 22.775 11.257 1 47270000 13797 6193 9348 9545 16497 16497 0.09732819733812903 FPREPRPKL 9 Unmodified _FPREPRPKL_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8963012695312 3 380.560981 1138.66111 1.4404 0.00054814 0.33751 0.00012844 1.7779 0.00067659 380.5610681225508 30.373 0.35255 26.876 26.718 27.07 -3.497 54 17 4 0 0 0 0.20389 1 17091 17091 22.775 8.3696 1 95296000 13798 6193 9348 9545 16498 16498 0.09732819733812903 FPREPRPKL 9 Unmodified _FPREPRPKL_ 0 0 0 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 ENSG00000152518|ENST00000282388|ZFP36L2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.560981 1138.66111 -0.62475 -0.00023775 0.88293 0.00033601 0.25819 9.8256E-05 380.89537675934355 27.001 0.12471 27.001 26.93 27.055 0 0.087146 0.00081581 NaN 22.775 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 417560 13799 6193 9348 9545 0.09732819733812903 FPRERLDYY 9 Unmodified _FPRERLDYY_ 0 0 0 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.5460205078125 3 420.212017 1257.61422 -0.030751 -1.2922E-05 -0.44184 -0.00018566 -0.47259 -0.00019859 420.21175404989685 39.267 0.28269 38.98 38.925 39.207 -0.28687 20 13 2 0 0 0 0.4887 1 20779 20779 8.1555 1.9637 1 2664300 13800 2434 9349 9546 16499 16499 -0.004280846080064293 FPRFHQGF 8 Unmodified _FPRFHQGF_ 0 0 0 REV__ENSG00000095110|ENST00000534921|NXPE1 REV__ENSG00000095110|ENST00000534921|NXPE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.260009765625 2 518.261594 1034.50863 NaN NaN NaN NaN NaN NaN NaN 89.537 1 89.035 88.535 89.535 -0.50171 0 0 0 0.97444 1 48952 48952 2.8892 0.31174 1 + 13801 17936 9350 9547 16500 16500 -0.007239559429535802 FPRFLQHIEEN 11 Unmodified _FPRFLQHIEEN_ 0 0 0 ENSG00000237765|ENST00000422728|FAM200B ENSG00000237765|ENST00000422728|FAM200B ENSG00000237765|ENST00000422728|FAM200B MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.3638916015625 2 715.364776 1428.715 0.23525 0.00016829 -1.7702 -0.0012664 -1.535 -0.0010981 715.3636852552422 99.084 0.14976 92.909 92.807 92.957 -6.1757 14 8 2 0 0 0 0.08701 1 65875 65875 43.982 23.401 1 40612000 13802 10656 9351 9548 16501 16501 0.017789473748734963 FPRFPHRGL 9 Unmodified _FPRFPHRGL_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2138671875 3 376.213804 1125.61958 -0.032348 -1.217E-05 -0.066662 -2.5079E-05 -0.09901 -3.7249E-05 376.2137680606919 35.127 0.3343 35.154 34.996 35.33 0.027401 33 15 3 0 0 0 0.14594 1 18532 18532 28.495 20.05 1 4979900 13803 10446 9352 9549 16502 16502 0.06179683765139998 FPRFPHRGL 9 Unmodified _FPRFPHRGL_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MSMS AL20221201_MKP_PDAC_01 4 376.2137451171875 3 376.213804 1125.61958 NaN NaN NaN NaN NaN NaN NaN 77.899 1 71.724 71.224 72.224 -6.1757 0 0 0 0.56988 1 50968 50968 13.615 4.6386 1 13804 10446 9352 9549 16503 16503 0.06179683765139998 FPRGLPEEF 9 Unmodified _FPRGLPEEF_ 0 0 0 nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1 nc|ENSG00000084636|Q07092-2|COL16A1 nc|ENSG00000084636|Q07092-2|COL16A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.27978515625 2 546.279649 1090.54475 0.10796 5.8977E-05 0.36915 0.00020166 0.47711 0.00026064 546.2795790632623 59.83 0.40097 59.339 59.089 59.49 -0.49079 34 19 2 0 0 0 0.19127 1 32491 32491 24.021 14.637 1 1722000 13805 1390 9353 9550 16504 16504 0.003094564432331026 FPRGPGSG 8 Unmodified _FPRGPGSG_ 0 0 0 ENSG00000228672|ENST00000434752|PROB1 ENSG00000228672|ENST00000434752|PROB1 ENSG00000228672|ENST00000434752|PROB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.6980590820312 2 387.698295 773.382037 -0.62187 -0.0002411 0.34484 0.0001337 -0.27703 -0.0001074 387.69842315341543 34.646 0.21521 34.646 34.518 34.733 0 24 10 3 0 0 0 0.80232 1 18262 18262 5.2307 0 1 5179800 13806 10603 9354 9551 16505 16505 -0.013718821680754445 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2094421386719 3 379.873224 1136.59784 -0.29864 -0.00011345 0.52215 0.00019835 0.2235 8.4903E-05 379.8733416862187 41.813 0.43641 41.813 41.538 41.975 0 70 22 5 0 0 0 0.07916 2 22516 22516;22628 28.495 0 1 135320000 13807 3653 9355 9552 16506;16507 16506 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.306640625 2 569.306198 1136.59784 -0.0034607 -1.9702E-06 1.1245 0.00064016 1.121 0.00063819 569.3068056371208 41.805 0.24808 41.805 41.709 41.957 0 44 12 4 0 0 0 0.021948 1 22617 22617 61.602 0 1 47890000 13808 3653 9355 9552 16508 16508 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8731994628906 3 379.873224 1136.59784 -0.16673 -6.3338E-05 0.34294 0.00013028 0.17621 6.6937E-05 379.87323602072365 42.055 0.3842 41.748 41.495 41.879 -0.30682 46 18 4 0 0 0 0.047196 2 22274 22274;22379 49.554 0 1 103240000 13809 3653 9355 9552 16509;16510 16509 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3082275390625 2 569.306198 1136.59784 -0.00088499 -5.0383E-07 1.5951 0.00090807 1.5942 0.00090757 569.3071607267673 42.061 0.26163 41.754 41.597 41.859 -0.30682 34 12 4 0 0 0 0.021948 1 22367 22367 61.602 0 1 43717000 13810 3653 9355 9552 16511 16511 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8729248046875 3 379.873224 1136.59784 -0.22636 -8.5987E-05 0.153 5.8119E-05 -0.073361 -2.7868E-05 379.8728472016979 41.763 0.18065 41.761 41.721 41.902 -0.0017929 11 8 2 0 0 0 0.19127 1 22363 22363 28.495 0 1 5396600 13811 3653 9355 9552 16512 16512 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8736572265625 3 379.873224 1136.59784 1.1872 0.00045097 -0.20223 -7.6821E-05 0.98492 0.00037415 379.8731081075106 47.074 0.58601 41.993 41.751 42.337 -5.0805 160 53 4 0 0 0 0.047196 3 29280 29016;29148;29280 34.932 0 1 234300000 13812 3653 9355 9552 16513;16514;16515 16515 0.035008342259061465 FPRHIEPEL 9 Unmodified _FPRHIEPEL_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.306396484375 2 569.306198 1136.59784 0.83997 0.0004782 -1.6056 -0.00091409 -0.76565 -0.00043589 569.3067237456077 47.085 0.55994 42.004 41.758 42.318 -5.0805 144 51 4 0 0 0 0.085319 1 29017 29017 36.506 0 1 196160000 13813 3653 9355 9552 16516 16516 0.035008342259061465 FPRKEEPRY 9 Unmodified _FPRKEEPRY_ 0 0 0 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;ENSG00000169258|ENST00000303991|GPRIN1 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8838806152344 3 407.884012 1220.63021 -0.60686 -0.00024753 0.58003 0.00023659 -0.026823 -1.0941E-05 407.88420758469346 17.896 0.24525 17.896 17.791 18.037 0 74 41 2 0 0 0 0.58499 1 8811 8811 2.2828 1.0894 1 1023900 13814 7860 9356 9553 16517 16517 0.028716216289012664 FPRKEEPRY 9 Unmodified _FPRKEEPRY_ 0 0 0 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;ENSG00000169258|ENST00000303991|GPRIN1 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8837280273438 3 407.884012 1220.63021 1.0537 0.00042979 0.1138 4.6416E-05 1.1675 0.00047621 407.8839282637932 19.197 0.38387 16.54 16.329 16.713 -2.6564 37 26 2 0 0 0 0.47359 1 10090 10090 8.9762 4.0792 1 5668200 13815 7860 9356 9553 16518 16518 0.028716216289012664 FPRKLLVTY 9 Unmodified _FPRKLLVTY_ 0 0 0 ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7 ENSG00000170537|ENST00000304381|TMC7 ENSG00000170537|ENST00000304381|TMC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8458862304688 2 568.844959 1135.67537 0.54932 0.00031248 0.26914 0.0001531 0.81846 0.00046558 568.845434223854 48.013 0.19361 47.975 47.89 48.083 -0.038647 24 9 3 0 0 0 0.12424 1 25896 25896 30.637 5.2372 1 3726300 13816 7999 9357 9554 16519 16519 0.1129547216210085 FPRKLLVTY 9 Unmodified _FPRKLLVTY_ 0 0 0 ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7 ENSG00000170537|ENST00000304381|TMC7 ENSG00000170537|ENST00000304381|TMC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5667419433594 3 379.565732 1135.67537 1.2317 0.00046749 0.66733 0.0002533 1.899 0.00072079 379.56593614131685 53.399 0.21217 47.595 47.481 47.693 -5.8042 18 13 2 0 0 0 0.23158 1 33766 33766 14.405 3.6059 1 22892000 13817 7999 9357 9554 16520 16520 0.1129547216210085 FPRKLLVTY 9 Unmodified _FPRKLLVTY_ 0 0 0 ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7 ENSG00000170537|ENST00000304381|TMC7 ENSG00000170537|ENST00000304381|TMC7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.565732 1135.67537 0.49178 0.00018666 -2.07 -0.0007857 -1.5782 -0.00059903 379.56492570715864 47.782 0.10322 47.743 47.661 47.764 -0.038643 0.07401 -0.0028312 NaN 14.405 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 453900 13818 7999 9357 9554 0.1129547216210085 FPRLEVSY 8 Unmodified _FPRLEVSY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7691650390625 2 505.768917 1009.52328 -0.094386 -4.7737E-05 -2.1245 -0.0010745 -2.2189 -0.0011223 505.76697597828996 58.048 0.40948 57.558 57.41 57.819 -0.48974 29 19 2 0 0 0 0.36898 1 31551 31551 47.749 17.112 1 2319600 13819 6599 9358 9555 16521 16521 0.018900714145161146 FPRLEVSY 8 Unmodified _FPRLEVSY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7694091796875 2 505.768917 1009.52328 1.2616 0.00063808 0.14669 7.4192E-05 1.4083 0.00071228 505.7687262644596 63.856 0.51127 57.68 57.506 58.017 -6.1757 34 27 2 0 0 0 0.31379 1 41331 41331 53.833 15.859 1 9511600 13820 6599 9358 9555 16522 16522 0.018900714145161146 FPRLEVSY 8 Unmodified _FPRLEVSY_ 0 0 0 ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B ENSG00000158615|ENST00000367188|PPP1R15B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.768917 1009.52328 0.91046 0.00046048 -0.21065 -0.00010654 0.69981 0.00035394 505.76871383050525 57.66 0.19967 57.594 57.494 57.694 -0.066036 -0.01685 -0.0001435 NaN 53.833 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 731130 13821 6599 9358 9555 0.018900714145161146 FPRLLDTKL 9 Unmodified _FPRLLDTKL_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2257385253906 3 368.225486 1101.65463 0.45592 0.00016788 0.18862 6.9454E-05 0.64454 0.00023734 368.2255960191007 58.834 0.47723 58.773 58.486 58.964 -0.060722 76 23 4 0 0 0 0.2289 2 32067 31958;32067 20.581 3.7641 1 31725000 13822 5265 9359 9556 16523;16524 16524 0.10786881782405544 FPRNISDGF 9 Unmodified _FPRNISDGF_ 0 0 0 CON__Q3ZBS7 CON__Q3ZBS7 CON__Q3ZBS7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.259765625 2 526.761623 1051.50869 0.64601 0.00034029 -4.1474 -0.0021847 -3.5014 -0.0018444 526.7602446571478 46.066 0.28537 41.111 40.922 41.208 -4.9549 25 18 2 0 0 0 0.16418 1 28384 28384 19.257 3.4098 1 13367000 + 13823 205 9360 9557 16525 16525 -0.015000007336084309 FPRNLAKSV 9 Unmodified _FPRNLAKSV_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1;ENSG00000131459|ENST00000253778|GFPT2 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000131459|ENST00000253778|GFPT2 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3037719726562 2 516.303458 1030.59236 0.038949 2.011E-05 0.85726 0.0004426 0.89621 0.00046271 516.3037674527668 30.365 0.24057 30.395 30.3 30.541 0.030104 22 10 3 0 0 0 0.11784 1 15866 15866 31.268 7.2478 1 2155200 13824 10085;4326 9361 9558 16526 16526 0.07829155434069435 FPRPTLPNVVY 11 Unmodified _FPRPTLPNVVY_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8651733398438 2 651.86388 1301.71321 0.71455 0.00046579 0.22154 0.00014442 0.9361 0.00061021 651.8637983621882 68.063 0.48172 68.088 67.836 68.318 0.025154 71 23 5 0 0 0 0.35659 1 37356 37356 23.801 15.056 1 5503500 13825 8441 9362 9559 16527 16527 0.07441938356896571 FPRPTLPNVVY 11 Unmodified _FPRPTLPNVVY_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.8639526367188 2 651.86388 1301.71321 0.42736 0.00027858 0.02561 1.6695E-05 0.45297 0.00029528 651.864003476856 82.237 0.66201 76.061 75.677 76.339 -6.1757 63 36 2 0 0 0 0.06459 3 53981 53855;53981;54116 47.732 30.619 1 25783000 13826 8441 9362 9559 16528;16529;16530 16529 0.07441938356896571 FPRRDVTQL 9 Unmodified _FPRRDVTQL_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.880615234375 3 377.88049 1130.61964 -0.19113 -7.2224E-05 -0.13595 -5.1375E-05 -0.32708 -0.0001236 377.8805394690539 31.154 0.53513 31.184 30.856 31.391 0.030106 37 22 2 0 0 0 0.31356 2 16272 16272;16393 16.566 6.2506 1 1627600 13827 9333 9363 9560 16531;16532 16531 0.05955638974478461 FPRRDVTQL 9 Unmodified _FPRRDVTQL_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8804931640625 3 377.88049 1130.61964 1.2776 0.00048278 0.21624 8.1714E-05 1.4938 0.0005645 377.880569816336 35.488 0.74694 31.295 30.977 31.724 -4.1928 82 46 2 0 0 0 0.40615 2 20779 20635;20779 12.175 12.175 1 18083000 13828 9333 9363 9560 16533;16534 16534 0.05955638974478461 FPRREFTKEDY 11 Unmodified _FPRREFTKEDY_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.9152221679688 3 496.580769 1486.72048 -0.33332 -0.00016552 -0.19994 -9.9285E-05 -0.53325 -0.0002648 496.58068510219766 26.096 0.64671 26.096 25.862 26.508 0 124 33 5 0 0 0 0.37147 3 13330 13330;13426;13524 23.016 16.781 1 33304000 13829 5590 9364 9561 16535;16536;16537 16535 -0.0034137383333927573 FPRREFTKEDY 11 Unmodified _FPRREFTKEDY_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.5807800292969 3 496.580769 1486.72048 0.3574 0.00017748 0.099361 4.9341E-05 0.45676 0.00022682 496.580751283503 26.133 0.46961 26.101 25.938 26.408 -0.031708 94 27 4 0 0 0 0.12206 3 13567 13368;13470;13567 39.923 33.689 1 151080000 13830 5590 9364 9561 16538;16539;16540 16540 -0.0034137383333927573 FPRREFTKEDY 11 Unmodified _FPRREFTKEDY_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.5804748535156 3 496.580769 1486.72048 0.36066 0.0001791 0.38034 0.00018887 0.741 0.00036797 496.58106228178156 25.911 0.34575 25.938 25.769 26.115 0.026951 31 19 2 0 0 0 0.053529 2 13389 13389;13485 50.13 40.887 1 14786000 13831 5590 9364 9561 16541;16542 16541 -0.0034137383333927573 FPRREFTKEDY 11 Unmodified _FPRREFTKEDY_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.9159851074219 3 496.580769 1486.72048 0.68484 0.00034008 0.11162 5.5428E-05 0.79646 0.00039551 496.5807488677087 29.406 0.69266 26.104 25.831 26.524 -3.3016 114 42 3 0 0 0 0.060768 4 16383 16383;16502;16635;16756 48.561 33.022 1 280520000 13832 5590 9364 9561 16543;16544;16545;16546 16543 -0.0034137383333927573 FPRREFTKEDY 11 Unmodified _FPRREFTKEDY_ 0 0 0 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 ENSG00000144224|ENST00000272638|UBXN4 MSMS AL20221201_MKP_PDAC_01 4 744.3696899414062 2 744.367515 1486.72048 NaN NaN NaN NaN NaN NaN NaN 29.373 1 26.071 25.571 26.571 -3.3016 0 0 0 0.096553 1 16492 16492 53.47 21.432 1 13833 5590 9364 9561 16547 16547 -0.0034137383333927573 FPRRPRAL 8 Unmodified _FPRRPRAL_ 0 0 0 REV__ENSG00000176381|ENST00000322583|PRR18 REV__ENSG00000176381|ENST00000322583|PRR18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.5864562988281 2 506.811785 1011.60902 0.56024 0.00028394 -0.68703 -0.0003482 -0.12679 -6.4257E-05 506.8115959994995 44.503 0.34043 39.651 39.452 39.793 -4.852 40 26 2 0 0 0 8.7369 1 27057 27057 20.871 8.6306 1 15045000 + 13834 22925 9365 9562 16548 16548 0.1036770111070382 FPRSFFTAY 9 Unmodified _FPRSFFTAY_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.283203125 2 568.282192 1134.54983 0.4886 0.00027766 1.027 0.00058361 1.5156 0.00086127 568.2827547137828 67.853 0.70179 67.871 67.591 68.293 0.018036 85 34 4 0 0 0 0.062454 2 37293 37191;37293 41.956 34.932 1 14859000 13835 7603 9366 9563 16549;16550 16550 -0.012062396941473708 FPRSHIEKIWK 11 Unmodified _FPRSHIEKIWK_ 0 0 0 ENST00000261560.9_1_19:21239464-21239533:+|nuORF ENST00000261560.9_1_19:21239464-21239533:+|nuORF ENST00000261560.9_1_19:21239464-21239533:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.9410705566406 3 480.941861 1439.80375 0.19099 9.1854E-05 -0.50543 -0.00024308 -0.31444 -0.00015123 480.94148238048126 38.538 0.27027 38.555 38.394 38.664 0.01704 35 12 4 0 0 0 0.70147 1 20465 20465 4.1166 1.2733 1 22736000 13836 11246 9367 9564 16551 16551 0.10144407405164202 FPRSIDVKY 9 Unmodified _FPRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5413818359375 3 375.541475 1123.60259 -0.34438 -0.00012933 0.27681 0.00010395 -0.067574 -2.5377E-05 375.5415898583398 41.726 0.25233 41.419 41.283 41.535 -0.30682 38 11 5 0 0 0 0.1685 1 22093 22093 19.626 6.0111 1 73662000 13837 2429 9368 9565 16552 16552 0.04573718368669688 FPRSIDVKY 9 Unmodified _FPRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5411071777344 3 375.541475 1123.60259 -0.15064 -5.6571E-05 -0.086969 -3.266E-05 -0.23761 -8.9232E-05 375.54145242844265 41.454 0.39694 41.452 41.221 41.618 -0.0017929 53 18 4 0 0 0 0.10247 1 22133 22133 24.882 11.267 1 89022000 13838 2429 9368 9565 16553 16553 0.04573718368669688 FPRSIDVKY 9 Unmodified _FPRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5422668457031 3 375.541475 1123.60259 0.95645 0.00035919 0.11981 4.4994E-05 1.0763 0.00040418 375.54153978355 46.461 0.4411 41.38 41.143 41.584 -5.0805 148 57 4 0 0 0 0.11784 3 28850 28561;28699;28850 23.801 13.65 1 390200000 13839 2429 9368 9565 16554;16555;16556 16556 0.04573718368669688 FPRSIDVKY 9 Unmodified _FPRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MSMS AL20221201_MKP_PDAC_01 4 375.5415954589844 3 375.541475 1123.60259 NaN NaN NaN NaN NaN NaN NaN 47.061 1 41.981 41.481 42.481 -5.0805 0 0 0 0.20976 1 29169 29169 28.234 14.328 1 13840 2429 9368 9565 16557 16557 0.04573718368669688 FPRSIDVKY 9 Unmodified _FPRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MSMS AL20221201_MKP_PDAC_01 4 375.5425720214844 3 375.541475 1123.60259 NaN NaN NaN NaN NaN NaN NaN 47.303 1 42.223 41.723 42.723 -5.0805 0 0 0 0.46232 1 29347 29347 12.175 5.5444 1 13841 2429 9368 9565 16558 16558 0.04573718368669688 FPRSPHPDW 9 Unmodified _FPRSPHPDW_ 0 0 0 REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.77490234375 2 569.775065 1137.53558 0.40026 0.00022806 -1.8174 -0.0010355 -1.4171 -0.00080744 569.7741973166522 39.483 0.65556 39.483 39.177 39.832 0 50 31 2 0 0 0 0.38785 1 21118 21118 13.042 2.2185 1 3444600 + 13842 25981 9369 9566 16559 16559 -0.02768892122435318 FPRSPHPDW 9 Unmodified _FPRSPHPDW_ 0 0 0 REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.774658203125 2 569.775065 1137.53558 0.27097 0.00015439 -0.85027 -0.00048446 -0.5793 -0.00033007 569.7745196677297 39.836 0.69897 39.539 39.243 39.942 -0.29716 72 33 3 0 0 0 0.28023 1 20970 20970 18.146 0.011366 1 3753200 + 13843 25981 9369 9566 16560 16560 -0.02768892122435318 FPRSRDPHY 9 Unmodified _FPRSRDPHY_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.19677734375 3 392.19659 1173.56794 -0.53748 -0.0002108 0.30068 0.00011792 -0.2368 -9.2873E-05 392.19663963708047 17.494 0.20773 17.508 17.437 17.645 0.013866 80 45 2 0 0 0 0.32871 1 8676 8676 10.8 2.3552 1 1734300 13844 2355 9370 9567 16561 16561 -0.011901047194214698 FPRTPGSSVL 10 Unmodified _FPRTPGSSVL_ 0 0 0 REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.7924194335938 2 530.792924 1059.57129 NaN NaN NaN NaN NaN NaN NaN 24.876 1 21.993 21.493 22.493 -2.8831 0 0 0 0.47175 1 13571 13571 27.629 0 1 + 13845 25167 9371 9568 16562 16562 0.043891453345850096 FPRTPMFY 8 Unmodified _FPRTPMFY_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4;REV__ENSG00000115616|ENST00000233969|SLC9A2 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7631225585938 2 529.760038 1057.50552 0.45444 0.00024075 3.0194 0.0015996 3.4738 0.0018403 529.7616651332137 83.067 0.40994 82.569 82.331 82.741 -0.49751 24 16 2 0 0 0 0.70102 1 45499 45499 10.824 0 1 1158900 + 13846 23146;18999 9372 9569 16563 16563 -0.020929671119574778 FPRTVDASL 9 Unmodified _FPRTVDASL_ 0 0 0 ENST00000567645.2_2_16:2213756-2218078:+|nuORF ENST00000567645.2_2_16:2213756-2218078:+|nuORF ENST00000567645.2_2_16:2213756-2218078:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2727966308594 2 503.271824 1004.5291 -0.048947 -2.4634E-05 -0.22501 -0.00011324 -0.27395 -0.00013787 503.2717243513672 48.563 0.52056 48.191 47.849 48.369 -0.37172 46 27 2 0 0 0 0.095405 1 25956 25956 34.102 7.2188 1 79914000 13847 15442 9373 9570 16564 16564 0.027011699261947797 FPRTVRQAEML 11 Unmodified _FPRTVRQAEML_ 0 0 0 nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2 nc|ENSG00000004455|P54819-6|AK2 nc|ENSG00000004455|P54819-6|AK2 MSMS AL20221201_MKP_PDAC_01 4 449.9118041992188 3 449.911573 1346.71289 NaN NaN NaN NaN NaN NaN NaN 46.149 1 41.194 40.694 41.694 -4.9549 0 0 0 0.57923 1 28457 28457 17.572 6.673 1 13848 274 9374 9571 16565 16565 0.05340195365397449 FPRVSVIRP 9 Unmodified _FPRVSVIRP_ 0 0 0 ENST00000596705.5_1_19:21646578-21646701:-|nuORF ENST00000596705.5_1_19:21646578-21646701:-|nuORF ENST00000596705.5_1_19:21646578-21646701:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.553955078125 3 357.553826 1069.63965 1.1742 0.00041985 -0.035848 -1.2817E-05 1.1384 0.00040704 357.55365830202845 46.637 0.4436 46.603 46.39 46.834 -0.033417 69 21 4 0 0 0 0.44883 1 25147 25147 10.151 1.1743 1 33698000 13849 15768 9375 9572 16566 16566 0.10761434705091233 FPRVSVIRP 9 Unmodified _FPRVSVIRP_ 0 0 0 ENST00000596705.5_1_19:21646578-21646701:-|nuORF ENST00000596705.5_1_19:21646578-21646701:-|nuORF ENST00000596705.5_1_19:21646578-21646701:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5540771484375 3 357.553826 1069.63965 1.2297 0.0004397 -0.03564 -1.2743E-05 1.1941 0.00042696 357.5537733187979 51.698 0.34345 46.049 45.863 46.207 -5.649 35 21 2 0 0 0 0.19361 1 32514 32514 23.79 7.6407 1 70682000 13850 15768 9375 9572 16567 16567 0.10761434705091233 FPRVYGVSL 9 Unmodified _FPRVYGVSL_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2931518554688 2 519.292559 1036.57057 0.64806 0.00033653 -0.6751 -0.00035057 -0.027034 -1.4039E-05 519.292136387073 65.244 0.31023 65.244 65.077 65.387 1.5259E-05 22 14 2 0 0 0 0.028475 1 35742 35742 56.177 27.095 1 6213700 13851 1752 9376 9573 16568 16568 0.053743506855198575 FPRWFVLSYW 10 Unmodified _FPRWFVLSYW_ 0 0 0 ENST00000526451.5_1_11:65765641-65765800:-|nuORF ENST00000526451.5_1_11:65765641-65765800:-|nuORF ENST00000526451.5_1_11:65765641-65765800:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.8609008789062 2 700.861141 1399.70773 2.3554 0.0016508 -3.0539 -0.0021404 -0.69857 -0.0004896 700.8591130396791 95.953 0.23962 95.957 95.79 96.03 0.0041504 19 8 3 0 0 0 0.67033 1 53300 53300 6.2058 0 1 2617800 13852 14818 9377 9574 16569 16569 0.023862595650825824 FPRWSIEESF 10 Unmodified _FPRWSIEESF_ 0 0 0 nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.3170776367188 2 649.31422 1296.61389 0.99766 0.0006478 1.7012 0.0011046 2.6988 0.0017524 649.3156762577511 91.674 0.34391 85.498 85.252 85.596 -6.1757 23 18 2 0 0 0 0.052718 1 60604 60604 57.249 26.546 1 6039800 13853 10543 9378 9575 16570 16570 -0.022555043278771336 FPSADEIIIKM 11 Unmodified _FPSADEIIIKM_ 0 0 0 nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A nc|ENSG00000006459|Q6ZMT4-2|KDM7A nc|ENSG00000006459|Q6ZMT4-2|KDM7A MSMS AL20221201_MKP_PDAC_01 4 632.3389892578125 2 632.336307 1262.65806 NaN NaN NaN NaN NaN NaN NaN 90.31 1 84.134 83.634 84.634 -6.1757 0 0 0 0.66577 1 59643 59643 22.658 9.6156 1 13854 337 9379 9576 16571 16571 0.037237637741100116 FPSAPDVKA 9 Unmodified _FPSAPDVKA_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2469177246094 2 466.247818 930.481082 0.57466 0.00026793 -1.4328 -0.00066805 -0.85817 -0.00040012 466.2468542167618 43.817 0.40168 39.052 38.857 39.259 -4.7648 33 25 2 0 0 0 0.017075 2 26629 26629;26789 66.457 18.708 1 6378500 13855 546 9380 9577 16572;16573 16572 0.013060960061352489 FPSATRRLGHY 11 Unmodified _FPSATRRLGHY_ 0 0 0 ENST00000587341.5_1_19:56879781-56880291:+|nuORF;ENST00000490123.5_1_19:56879754-56880291:+|nuORF ENST00000587341.5_1_19:56879781-56880291:+|nuORF ENST00000587341.5_1_19:56879781-56880291:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.3472900390625 2 652.846553 1303.67855 0.68446 0.00044685 -1.0627 -0.00069377 -0.37822 -0.00024692 653.347476151104 82.853 0.64045 76.677 76.405 77.045 -6.1757 82 35 3 0 0 0 0.18636 2 54585 54427;54585 32.786 8.9959 1 14146000 13856 14253 9381 9578 16574;16575 16575 0.03886115268824142 FPSATRRLGHY 11 Unmodified _FPSATRRLGHY_ 0 0 0 ENST00000587341.5_1_19:56879781-56880291:+|nuORF;ENST00000490123.5_1_19:56879754-56880291:+|nuORF ENST00000587341.5_1_19:56879781-56880291:+|nuORF ENST00000587341.5_1_19:56879781-56880291:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 652.8467407226562 2 652.846553 1303.67855 NaN NaN NaN NaN NaN NaN NaN 82.638 1 76.462 75.962 76.962 -6.1757 0 0 0 0.33438 1 54291 54291 31.268 0 1 13857 14253 9381 9578 16576 16576 0.03886115268824142 FPSDKIVHY 9 Unmodified _FPSDKIVHY_ 0 0 0 ENST00000580840.1_2_17:29226189-29226666:-|nuORF;ENSG00000172171|ENST00000581216|TEFM ENST00000580840.1_2_17:29226189-29226666:-|nuORF ENST00000580840.1_2_17:29226189-29226666:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.1939697265625 3 369.194075 1104.5604 -0.011415 -4.2145E-06 -0.55618 -0.00020534 -0.5676 -0.00020955 369.193832370466 37.866 0.49565 37.594 37.327 37.822 -0.27133 39 23 2 0 0 0 0.23158 1 19966 19966 24.991 18.361 1 1982200 13858 8188 9382 9579 16577 16577 0.012297429602767807 FPSDKIVHY 9 Unmodified _FPSDKIVHY_ 0 0 0 ENST00000580840.1_2_17:29226189-29226666:-|nuORF;ENSG00000172171|ENST00000581216|TEFM ENST00000580840.1_2_17:29226189-29226666:-|nuORF ENST00000580840.1_2_17:29226189-29226666:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1938171386719 3 369.194075 1104.5604 1.6704 0.00061671 -0.87331 -0.00032242 0.79712 0.00029429 369.19349396227904 42.666 0.44432 37.981 37.747 38.191 -4.6846 52 29 2 0 0 0 0.08691 2 25866 25734;25866 33.445 26.815 1 22116000 13859 8188 9382 9579 16578;16579 16579 0.012297429602767807 FPSEDILLV 9 Unmodified _FPSEDILLV_ 0 0 0 ENSG00000121350|ENST00000240651|PYROXD1 ENSG00000121350|ENST00000240651|PYROXD1 ENSG00000121350|ENST00000240651|PYROXD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.562255859375 1 1032.56119 1031.55391 -0.35515 -0.00036672 -0.012536 -1.2944E-05 -0.36769 -0.00037966 1032.5607414261247 90.381 0.95052 90.381 90.02 90.971 0 60 53 2 0 0 0 0.23158 1 50068 50068 20.454 4.6064 1 799790 13860 3579 9383 9580 16580 16580 0.039398050088948366 FPSEFDTTI 9 Unmodified _FPSEFDTTI_ 0 0 0 ENST00000582201.5_1_17:62781409-62811241:-|nuORF ENST00000582201.5_1_17:62781409-62811241:-|nuORF ENST00000582201.5_1_17:62781409-62811241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7491455078125 2 528.747847 1055.48114 0.80987 0.00042822 -0.18105 -9.5732E-05 0.62882 0.00033248 528.7478575404094 73.378 0.58759 73.378 73.126 73.713 0 79 29 4 0 0 0 0.41742 1 40966 40966 11.64 0 1 11885000 13861 15569 9384 9581 16581 16581 -0.04437948784516266 FPSEHHKEAY 10 Unmodified _FPSEHHKEAY_ 0 0 0 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5277099609375 3 415.528005 1243.56219 -0.67645 -0.00028108 0.4955 0.00020589 -0.18095 -7.5191E-05 415.52823057478486 16.237 0.46971 16.237 16.057 16.526 0 223 120 3 0 0 0 0.5012 2 7923 7825;7923 16.275 3.5871 1 5592000 13862 738 9385 9582 16582;16583 16583 -0.04985248021762345 FPSEHHKEAY 10 Unmodified _FPSEHHKEAY_ 0 0 0 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.5281066894531 3 415.528005 1243.56219 0.63099 0.00026219 -0.045594 -1.8945E-05 0.58539 0.00024325 415.52799420208873 17.293 0.47322 14.706 14.481 14.954 -2.5866 226 85 4 0 0 0 0.16688 3 9122 8909;9015;9122 37.771 25.997 1 23973000 13863 738 9385 9582 16584;16585;16586 16586 -0.04985248021762345 FPSEITDTV 9 Unmodified _FPSEITDTV_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.745361328125 2 504.747847 1007.48114 1.2282 0.00061994 -4.0706 -0.0020546 -2.8424 -0.0014347 504.7458047875041 64.628 0.3996 58.453 58.315 58.715 -6.1757 35 22 2 0 0 0 0.070838 1 41874 41874 39.957 0 1 11340000 13864 824 9386 9583 16587 16587 -0.022299487845316435 FPSEVVGKM 9 Oxidation (M) _FPSEVVGKM(Oxidation (M))_ FPSEVVGKM(1) FPSEVVGKM(46) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2545166015625 2 505.254785 1008.49502 -0.82184 -0.00041524 -0.23478 -0.00011862 -1.0566 -0.00053386 505.25474789715366 32.534 0.28108 32.534 32.472 32.753 0 29 15 2 0 0 0 0.047788 1 17083 17083 45.7 26.261 1 5527700 13865 1295 9387 9584 16588 16588 220 -0.008889945570558666 FPSEVVGKM 9 Oxidation (M) _FPSEVVGKM(Oxidation (M))_ FPSEVVGKM(1) FPSEVVGKM(44) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.5849609375 2 505.254785 1008.49502 NaN NaN NaN NaN NaN NaN NaN 32.398 1 32.398 31.898 32.898 0 0 0 0 0.098496 1 16923 16923 43.772 25.637 1 13866 1295 9387 9584 16589 16589 220 -0.008889945570558666 FPSEVVGKM 9 Oxidation (M) _FPSEVVGKM(Oxidation (M))_ FPSEVVGKM(1) FPSEVVGKM(63) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2545166015625 2 505.254785 1008.49502 NaN NaN NaN NaN NaN NaN NaN 32.449 1 32.449 31.949 32.949 0 0 0 0 0.038824 1 16952 16952 62.573 37.173 1 13867 1295 9387 9584 16590 16590 220 -0.008889945570558666 FPSEVVGKM 9 Oxidation (M) _FPSEVVGKM(Oxidation (M))_ FPSEVVGKM(1) FPSEVVGKM(83) 0 0 1 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2559204101562 2 505.254785 1008.49502 1.1942 0.00060337 1.0143 0.00051246 2.2084 0.0011158 505.2554164380242 37.224 0.4879 32.94 32.65 33.137 -4.2835 53 29 2 0 0 0 0.0094097 1 21828 21828 82.529 50.224 1 8394900 13868 1295 9387 9584 16591 16591 220 -0.008889945570558666 FPSEVVGKM 9 Unmodified _FPSEVVGKM_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2581481933594 2 497.257328 992.500103 1.0815 0.00053777 -0.85599 -0.00042565 0.22549 0.00011213 497.2569249147942 51.114 0.32565 45.465 45.232 45.558 -5.649 32 19 2 0 0 0 0.008513 1 32051 32051 99.755 51.409 1 30646000 13869 1295 9387 9585 16592 16592 0.0035530930555296436 FPSEYVPTVF 10 Unmodified _FPSEYVPTVF_ 0 0 0 nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42 nc|ENSG00000289694|P60953-1|CDC42 nc|ENSG00000289694|P60953-1|CDC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.2960815429688 2 593.294965 1184.57538 0.55229 0.00032767 -1.4255 -0.00084571 -0.87316 -0.00051804 593.7950240467754 85.851 0.5493 85.35 85.074 85.623 -0.5015 89 24 5 0 0 0 0.62068 2 46944 46846;46944 10.074 3.3508 1 1793900 13870 1042 9388 9586 16593;16594 16594 -0.009528099624048991 FPSGETIVM 9 Oxidation (M) _FPSGETIVM(Oxidation (M))_ FPSGETIVM(1) FPSGETIVM(44) 0 0 1 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7394409179688 2 498.738968 995.463383 0.55746 0.00027803 1.0556 0.00052645 1.613 0.00080448 498.73936377066747 47.463 1.0367 47.463 46.879 47.916 0 87 48 3 0 0 0 0.052168 2 25791 25791;26016 44.407 22.66 1 6505700 13871 2508 9389 9587 16595;16596 16595 429 -0.03452987311004563 FPSGETIVM 9 Oxidation (M) _FPSGETIVM(Oxidation (M))_ FPSGETIVM(1) FPSGETIVM(89) 0 0 1 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.4677734375 1 996.47066 995.463383 0.16389 0.00016331 0.85429 0.00085128 1.0182 0.0010146 996.4712810523903 47.286 0.64571 47.286 46.999 47.644 0 38 29 2 0 0 0 0.0086179 3 25815 25815;25922;26025 89.427 41.081 1 887160 13872 2508 9389 9587 16597;16598;16599 16597 429 -0.03452987311004563 FPSGHAALY 9 Unmodified _FPSGHAALY_ 0 0 0 ENST00000336314.8_2_5:154195789-154195924:+|nuORF ENST00000336314.8_2_5:154195789-154195924:+|nuORF ENST00000336314.8_2_5:154195789-154195924:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7389831542969 2 481.74016 961.465767 -0.41908 -0.00020189 -1.3894 -0.00066931 -1.8084 -0.00087119 481.73921693229323 34.001 0.13643 34.001 33.888 34.025 0 11 6 2 0 0 0 0.06187 1 17873 17873 42.095 2.1372 1 3016900 13873 11910 9390 9588 16600 16600 -0.016507707910591307 FPSGHAALY 9 Unmodified _FPSGHAALY_ 0 0 0 ENST00000336314.8_2_5:154195789-154195924:+|nuORF ENST00000336314.8_2_5:154195789-154195924:+|nuORF ENST00000336314.8_2_5:154195789-154195924:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 481.74016 961.465767 -0.14608 -7.0371E-05 0.33766 0.00016267 0.19159 9.2295E-05 481.7403197148732 34.135 0.1558 33.944 33.865 34.02 -0.19131 -0.028696 0.00060772 NaN 42.095 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 472580 13874 11910 9390 9588 -0.016507707910591307 FPSGIIKVF 9 Unmodified _FPSGIIKVF_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.3003234863281 2 504.299853 1006.58515 0.20705 0.00010442 0.64123 0.00032337 0.84829 0.00042779 504.3000745854885 76.754 0.58167 76.804 76.567 77.149 0.05011 79 24 4 0 0 0 0.013609 3 42388 42283;42388;42492 70.332 43.448 1 42987000 13875 6501 9391 9589 16601;16602;16603 16602 0.08212422833673827 FPSGIIKVF 9 Unmodified _FPSGIIKVF_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.3010864257812 2 504.299853 1006.58515 1.1203 0.00056496 0.067121 3.3849E-05 1.1874 0.00059881 504.2998724449401 95.218 1.0325 89.042 88.351 89.383 -6.1757 166 58 4 0 0 0 0.0086209 5 62717 62717;62870;62989;63105;63225 89.401 57.095 1 91969000 13876 6501 9391 9589 16604;16605;16606;16607;16608 16604 0.08212422833673827 FPSGSVHSF 9 Unmodified _FPSGSVHSF_ 0 0 0 ENSG00000164031|ENST00000442697|DNAJB14;nc|ENSG00000164031|Q8TBM8-2|DNAJB14 ENSG00000164031|ENST00000442697|DNAJB14 ENSG00000164031|ENST00000442697|DNAJB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7300720214844 2 482.729792 963.445031 0.62327 0.00030087 1.2425 0.00059981 1.8658 0.00090069 482.730619227239 40.456 1.345 40.158 39.548 40.893 -0.29716 140 64 3 0 0 0 0.0088975 3 21417 21206;21310;21417 104.8 60.392 1 9822600 13877 7116 9392 9590 16609;16610;16611 16611 -0.0381536117071164 FPSGSVHSF 9 Unmodified _FPSGSVHSF_ 0 0 0 ENSG00000164031|ENST00000442697|DNAJB14;nc|ENSG00000164031|Q8TBM8-2|DNAJB14 ENSG00000164031|ENST00000442697|DNAJB14 ENSG00000164031|ENST00000442697|DNAJB14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.730712890625 2 482.729792 963.445031 0.56675 0.00027358 1.5616 0.00075385 2.1284 0.0010274 482.73077599206215 45.454 1.1614 40.499 39.857 41.018 -4.9549 160 77 3 0 0 0 0.00856 3 27639 27500;27639;27781 100.37 58.277 1 41837000 13878 7116 9392 9590 16612;16613;16614 16613 -0.0381536117071164 FPSIKQRGSY 10 Unmodified _FPSIKQRGSY_ 0 0 0 REV__ENST00000430060.1_1_21:23157296-23158685:+|nuORF REV__ENST00000430060.1_1_21:23157296-23158685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8154907226562 2 591.81693 1181.61931 0.67592 0.00040002 -2.324 -0.0013754 -1.6481 -0.00097536 592.3178451809847 57.672 0.18071 57.606 57.494 57.675 -0.066036 19 8 3 0 0 0 0.52888 1 31394 31394 14.838 3.198 1 1590500 + 13879 26960 9393 9591 16615 16615 0.03576219254637181 FPSILTAVL 9 Unmodified _FPSILTAVL_ 0 0 0 nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 960.5786743164062 1 960.576445 959.569169 0.71347 0.00068534 1.2923 0.0012414 2.0058 0.0019267 960.5777028304677 101.5 0.1209 95.32 95.252 95.373 -6.1757 13 5 3 0 0 0 0.010877 1 68134 68134 77.984 10.64 1 18203000 13880 7957 9394 9592 16616 16616 0.087767165967648 FPSIYDVF 8 Unmodified _FPSIYDVF_ 0 0 0 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 ENSG00000168917|ENST00000446465|SLC35G2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2790222167969 2 494.244744 986.474934 1.161 0.00057382 -3.5803 -0.0017696 -2.4193 -0.0011957 494.24180642552477 61.571 0.44999 55.395 55.147 55.597 -6.1757 33 22 2 0 0 0 8.7369 1 39512 39512 24.674 0 1 20885000 13881 7814 9395 9593 16617 16617 -0.018844222253733278 FPSIYDVKY 9 Unmodified _FPSIYDVKY_ 0 0 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2911987304688 2 566.289682 1130.56481 0.32831 0.00018592 0.66285 0.00037536 0.99116 0.00056129 566.2899444505335 63.356 0.42033 63.356 63.146 63.567 0 40 21 2 0 0 0 0.052231 1 35308 35308 47.594 22.92 1 4075600 13882 6392 9396 9594 16618 16618 0.004752073831923553 FPSIYDVKY 9 Unmodified _FPSIYDVKY_ 0 0 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2894287109375 2 566.289682 1130.56481 0.67013 0.00037949 -0.59094 -0.00033464 0.079192 4.4846E-05 566.2892727841039 63.909 0.67626 63.424 63.062 63.739 -0.48512 65 34 2 0 0 0 0.012586 3 34845 34741;34845;34954 89.401 37.132 1 209320000 13883 6392 9396 9594 16619;16620;16621 16620 0.004752073831923553 FPSIYDVKY 9 Unmodified _FPSIYDVKY_ 0 0 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2894897460938 2 566.289682 1130.56481 0.84496 0.00047849 -0.28439 -0.00016105 0.56057 0.00031744 566.2894190490907 63.412 0.60145 63.391 63.129 63.73 -0.021614 56 29 2 0 0 0 0.012586 3 34604 34604;34705;34815 89.401 42.474 1 194440000 13884 6392 9396 9594 16622;16623;16624 16622 0.004752073831923553 FPSIYDVKY 9 Unmodified _FPSIYDVKY_ 0 0 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.290283203125 2 566.289682 1130.56481 1.1814 0.00066902 -0.31127 -0.00017627 0.87014 0.00049275 566.2896994659174 70.721 1.1831 64.546 63.862 65.045 -6.1757 128 63 3 0 0 0 0.0060143 4 46416 46053;46177;46298;46416 137.42 76.066 1 1376200000 13885 6392 9396 9594 16625;16626;16627;16628 16628 0.004752073831923553 FPSKSITF 8 Unmodified _FPSKSITF_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7534484863281 2 463.752736 925.490919 1.1588 0.00053739 -1.1711 -0.0005431 -0.012293 -5.7011E-06 463.7523046110004 49.944 0.86012 49.895 49.331 50.191 -0.048824 89 42 4 0 0 0 0.46468 2 26997 26997;27096 38.176 7.9221 1 2335300 13886 3374 9397 9595 16629;16630 16629 0.025192840115209947 FPSKSITF 8 Unmodified _FPSKSITF_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7524108886719 2 463.752736 925.490919 1.0744 0.00049828 -0.37289 -0.00017293 0.70155 0.00032535 463.7526046399477 55.497 0.65226 49.576 49.241 49.893 -5.9211 58 39 2 0 0 0 0.54555 1 35255 35255 30.637 0.41173 1 10100000 13887 3374 9397 9595 16631 16631 0.025192840115209947 FPSKTVAQY 9 Unmodified _FPSKTVAQY_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7749633789062 2 520.7742 1039.53385 NaN NaN NaN NaN NaN NaN NaN 32.256 1 32.127 31.627 32.627 -0.12915 0 0 0 0.46232 1 16790 16790 17.113 4.5813 1 13888 1584 9398 9596 16632 16632 0.015660540689623303 FPSKTVAQY 9 Unmodified _FPSKTVAQY_ 0 0 0 nc|ENSG00000091409|P23229-4|ITGA6;ENSG00000091409|ENST00000684293|ITGA6;nc|ENSG00000091409|P23229-5|ITGA6;nc|ENSG00000091409|P23229-3|ITGA6;nc|ENSG00000091409|P23229-9|ITGA6;nc|ENSG00000091409|P23229-6|ITGA6;nc|ENSG00000091409|P23229|ITGA6;nc|ENSG00000091409|P23229-7|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 nc|ENSG00000091409|P23229-4|ITGA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2767944335938 2 520.7742 1039.53385 1.1492 0.00059848 -0.40763 -0.00021228 0.74159 0.0003862 520.7740609152958 37.009 0.99175 32.725 32.237 33.229 -4.2835 101 60 2 0 0 0 0.021948 2 21867 21726;21867 61.602 32.52 1 14103000 13889 1584 9398 9596 16633;16634 16634 0.015660540689623303 FPSLFINQF 9 Unmodified _FPSLFINQF_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7945556640625 2 556.792392 1111.57023 4.1456 0.0023082 -0.37968 -0.0002114 3.7659 0.0020968 556.7920416045587 99.345 0.19658 99.317 99.216 99.413 -0.028282 13 6 3 0 0 0 0.012148 1 55196 55196 74.423 38.379 1 3436900 13890 5744 9399 9597 16635 16635 0.01890930965669213 FPSLFINQF 9 Unmodified _FPSLFINQF_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7920532226562 2 556.792392 1111.57023 1.8158 0.001011 -0.6653 -0.00037043 1.1505 0.00064061 556.7919492063137 100.86 0.11098 94.685 94.623 94.734 -6.1757 11 6 2 0 0 0 0.026094 1 67561 67561 57.471 21.427 1 36268000 13891 5744 9399 9597 16636 16636 0.01890930965669213 FPSLHRKF 8 Unmodified _FPSLHRKF_ 0 0 0 REV__ENST00000462139.1_1_1:247462914-247463100:-|nuORF REV__ENST00000462139.1_1_1:247462914-247463100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2935791015625 2 516.292894 1030.57123 0.51429 0.00026552 3.121 0.0016113 3.6353 0.0018769 516.2938989524289 72.131 0.71358 71.655 71.389 72.102 -0.47609 46 31 2 0 0 0 0.75262 1 39551 39551 12.532 0.89125 1 1890100 + 13892 27331 9400 9598 16637 16637 0.057171901252331736 FPSLLARTF 9 Unmodified _FPSLLARTF_ 0 0 0 ENST00000586500.1_1_19:13993617-13994323:-|nuORF ENST00000586500.1_1_19:13993617-13994323:-|nuORF ENST00000586500.1_1_19:13993617-13994323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3019409179688 2 526.300384 1050.58622 3.4734 0.001828 -0.38629 -0.0002033 3.0871 0.0016247 526.3005362908754 98.022 0.3327 98.004 97.873 98.206 -0.018188 24 11 4 0 0 0 0.07087 1 54509 54509 53.576 15.424 1 2337500 13893 15622 9401 9599 16638 16638 0.06294637202563536 FPSLMWFY 8 Oxidation (M) _FPSLM(Oxidation (M))WFY_ FPSLM(1)WFY FPSLM(50)WFY 0 0 1 REV__nc|ENSG00000116690|Q92954-5|PRG4 REV__nc|ENSG00000116690|Q92954-5|PRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7532348632812 2 553.754421 1105.49429 0.38702 0.00021431 -0.92117 -0.0005101 -0.53415 -0.00029579 553.7538796130392 62.3 1.2485 62.3 61.597 62.846 0 125 64 2 0 0 0 0.35156 2 34770 34502;34770 49.669 14.795 1 8499700 + 13894 19058 9402 9600 16639;16640 16640 1836 -0.054237892061337334 FPSLQLPQFYD 11 Unmodified _FPSLQLPQFYD_ 0 0 0 nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;ENST00000454469.6_1_9:214976-340322:+|nuORF nc|ENSG00000107099|Q8NF50-2|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 MSMS AL20221201_MKP_PDAC_01 4 677.8388061523438 2 677.837528 1353.6605 NaN NaN NaN NaN NaN NaN NaN 56.634 1 50.657 50.157 51.157 -5.9769 0 0 0 0.43177 1 36157 36157 27.223 3.2027 1 13895 2473 9403 9601 16641 16641 -0.002180644965847023 FPSLQRLVY 9 Unmodified _FPSLQRLVY_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-4|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8193969726562 2 561.818941 1121.62333 1.0091 0.00056692 0.20499 0.00011516 1.2141 0.00068209 561.8189615929007 69.094 0.53764 69.125 68.776 69.314 0.030914 80 25 4 0 0 0 0.0091809 2 37879 37879;37980 72.968 38.566 1 16733000 13896 4201;16644 9404 9602 16642;16643 16642 0.06738308748322197 FPSLQRLVY 9 Unmodified _FPSLQRLVY_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-4|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3228149414062 2 561.818941 1121.62333 0.29919 0.00016809 2.1044 0.0011823 2.4036 0.0013504 561.8203100581718 85.062 0.63589 78.886 78.517 79.153 -6.1757 66 38 3 0 0 0 0.020316 2 56035 55914;56035 60.074 32.445 1 28317000 13897 4201;16644 9404 9602 16644;16645 16645 0.06738308748322197 FPSMPSPRL 9 Unmodified _FPSMPSPRL_ 0 0 0 ENST00000460667.5_1_10:111985902-112004616:+|nuORF;ENST00000485566.1_1_10:111987858-112005573:+|nuORF;nc|ENSG00000119950|P50539|MXI1;ENSG00000119950|ENST00000332674|MXI1 ENST00000460667.5_1_10:111985902-112004616:+|nuORF ENST00000460667.5_1_10:111985902-112004616:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.273193359375 2 516.27077 1030.52699 NaN NaN NaN NaN NaN NaN NaN 59.155 1 59.094 58.594 59.594 -0.060719 0 0 0 0.25233 1 32233 32233 27.629 2.9549 1 13898 3484 9405 9603 16646 16646 0.012944179167334369 FPSNESSVSSF 11 Unmodified _FPSNESSVSSF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2630615234375 2 594.264393 1186.51423 -0.14906 -8.8584E-05 0.89834 0.00053385 0.74928 0.00044527 594.265457485097 49.002 1.1598 49.002 48.351 49.51 0 164 53 4 0 0 0 0.012228 5 26589 26589;26716;26829;26941;27060 65.474 41.453 1 35580000 13899 9152 9406 9604 16647;16648;16649;16650;16651 16647 -0.07156366732488095 FPSNESSVSSF 11 Unmodified _FPSNESSVSSF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2649536132812 2 594.264393 1186.51423 0.42881 0.00025483 -1.1772 -0.00069959 -0.74842 -0.00044476 594.2646789422238 49.372 0.5828 49.372 49.277 49.859 0 59 26 3 0 0 0 0.038431 2 27295 27173;27295 53.404 29.383 1 14461000 13900 9152 9406 9604 16652;16653 16653 -0.07156366732488095 FPSNESSVSSF 11 Unmodified _FPSNESSVSSF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2652587890625 2 594.264393 1186.51423 0.72391 0.0004302 0.56637 0.00033657 1.2903 0.00076677 594.264774325482 49.471 1.2291 49.078 48.443 49.672 -0.3923 152 61 3 0 0 0 2.8439E-06 5 26479 26372;26479;26582;26690;26794 100.09 58.251 1 9892400 13901 9152 9406 9604 16654;16655;16656;16657;16658 16655 -0.07156366732488095 FPSNLVSAAF 10 Unmodified _FPSNLVSAAF_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2755126953125 2 526.7742 1051.53385 0.26957 0.000142 -1.3882 -0.00073126 -1.1186 -0.00058925 526.7731187484897 80.481 0.44798 80.538 80.364 80.812 0.057587 52 18 4 0 0 0 0.0072789 2 44454 44454;44574 92.653 52.696 1 9467400 13902 2298 9407 9605 16659;16660 16659 0.010140540689462796 FPSNLVTEM 9 Oxidation (M) _FPSNLVTEM(Oxidation (M))_ FPSNLVTEM(1) FPSNLVTEM(61) 0 0 1 ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2500610351562 2 527.2497 1052.48485 0.53778 0.00028355 -0.2292 -0.00012085 0.30858 0.0001627 527.249836562418 50.146 0.91112 50.146 49.773 50.685 0 116 42 4 0 0 0 0.022193 3 27633 27521;27633;27760 61.357 38.209 1 10767000 13903 6533;16300 9408 9606 16661;16662;16663 16662 1144 -0.03929602282300948 FPSNLVTEM 9 Oxidation (M) _FPSNLVTEM(Oxidation (M))_ FPSNLVTEM(1) FPSNLVTEM(52) 0 0 1 ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2488403320312 2 527.2497 1052.48485 0.59681 0.00031467 0.22217 0.00011714 0.81898 0.00043181 527.2500474461525 50.657 0.86442 50.244 49.992 50.856 -0.41351 104 42 4 0 0 0 0.03568 2 27194 27194;27378 52.268 32.829 1 7323900 13904 6533;16300 9408 9606 16664;16665 16664 1144 -0.03929602282300948 FPSNLVTEM 9 Oxidation (M) _FPSNLVTEM(Oxidation (M))_ FPSNLVTEM(1) FPSNLVTEM(79) 0 0 1 ENSG00000157637|ENST00000374759|SLC38A10;ENST00000546352.1_1_17:79244758-79256003:-|nuORF;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2492065429688 2 527.2497 1052.48485 0.43519 0.00022945 -0.76891 -0.00040541 -0.33372 -0.00017595 527.2492657073587 58.19 0.5131 52.163 51.853 52.366 -6.0275 42 27 2 0 0 0 0.010611 1 37167 37167 78.728 26.46 1 22641000 13905 6533;16300 9408 9606 16666 16666 1144 -0.03929602282300948 FPSNSGDRF 9 Unmodified _FPSNSGDRF_ 0 0 0 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.736083984375 2 513.735606 1025.45666 -0.75105 -0.00038584 0.38705 0.00019884 -0.36401 -0.000187 513.735497448875 32.163 0.51234 32.163 31.88 32.393 0 47 25 3 0 0 0 0.078314 1 16686 16686 38.176 9.094 1 1638100 13906 3083 9409 9607 16667 16667 -0.05505164147371033 FPSNSGDRF 9 Unmodified _FPSNSGDRF_ 0 0 0 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 MSMS AL20221201_MKP_PDAC_01 4 513.7362670898438 2 513.735606 1025.45666 NaN NaN NaN NaN NaN NaN NaN 36.221 1 32.028 31.528 32.528 -4.1928 0 0 0 0.068038 1 21128 21128 51.63 13.656 1 13907 3083 9409 9607 16668 16668 -0.05505164147371033 FPSNSGDRF 9 Unmodified _FPSNSGDRF_ 0 0 0 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 513.735606 1025.45666 0.4698 0.00024135 2.9961 0.0015392 3.4659 0.0017805 513.7363813643749 36.573 0.073647 32.29 32.237 32.311 -4.2835 0.063369 0.0024961 NaN 38.176 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 10919000 13908 3083 9409 9607 -0.05505164147371033 FPSPAAPGP 9 Unmodified _FPSPAAPGP_ 0 0 0 ENST00000589796.2_1_17:43247661-43248513:-|nuORF ENST00000589796.2_1_17:43247661-43248513:-|nuORF ENST00000589796.2_1_17:43247661-43248513:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 840.4334106445312 1 840.42503 839.417754 4.2156 0.0035429 4.1904 0.0035217 8.406 0.0070646 840.4289687434557 98.651 0.16111 98.623 98.532 98.693 -0.028282 7 5 2 0 0 0 0.10925 1 54810 54810 32.117 7.4431 1 1741000 13909 15677 9410 9608 16669 16669 -0.008378447110999332 FPSPGPVAL 9 Unmodified _FPSPGPVAL_ 0 0 0 ENSG00000187838|ENST00000619711|PLSCR3;ENST00000571541.5_1_17:7296780-7297150:-|nuORF ENSG00000187838|ENST00000619711|PLSCR3 ENSG00000187838|ENST00000619711|PLSCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.4869995117188 1 884.48763 883.480354 -0.62939 -0.00055669 1.488 0.0013161 0.85864 0.00075946 884.4890814046855 69.333 0.53065 68.853 68.628 69.158 -0.47961 32 22 2 0 0 0 0.070838 2 37949 37849;37949 39.957 9.7325 1 953450 13910 9601 9411 9609 16670;16671 16671 0.0339530135709083 FPSPGPVAL 9 Unmodified _FPSPGPVAL_ 0 0 0 ENSG00000187838|ENST00000619711|PLSCR3;ENST00000571541.5_1_17:7296780-7297150:-|nuORF ENSG00000187838|ENST00000619711|PLSCR3 ENSG00000187838|ENST00000619711|PLSCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7476806640625 2 442.747453 883.480354 -0.0067277 -2.9787E-06 0.74861 0.00033145 0.74188 0.00032847 442.74772303276364 69.252 0.67392 68.771 68.506 69.18 -0.48071 66 28 3 0 0 0 0.038285 1 37910 37910 50.855 12.704 1 2787400 13911 9601 9411 9609 16672 16672 0.0339530135709083 FPSPGPVAL 9 Unmodified _FPSPGPVAL_ 0 0 0 ENSG00000187838|ENST00000619711|PLSCR3;ENST00000571541.5_1_17:7296780-7297150:-|nuORF ENSG00000187838|ENST00000619711|PLSCR3 ENSG00000187838|ENST00000619711|PLSCR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7476806640625 2 442.747453 883.480354 0.92663 0.00041026 0.15134 6.7007E-05 1.078 0.00047727 442.74736749190384 76.025 0.59431 69.849 69.465 70.059 -6.1757 54 31 2 0 0 0 0.013472 2 49627 49627;49744 70.716 30.267 1 16145000 13912 9601 9411 9609 16673;16674 16673 0.0339530135709083 FPSPHILQI 9 Unmodified _FPSPHILQI_ 0 0 0 nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18 nc|ENSG00000179456|Q99592|ZBTB18 nc|ENSG00000179456|Q99592|ZBTB18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3001098632812 2 526.300384 1050.58622 0.49973 0.00026301 0.35625 0.00018749 0.85598 0.0004505 526.3001451083453 70.212 0.36837 70.248 70.114 70.483 0.035515 36 17 3 0 0 0 0.0093064 1 38652 38652 71.922 35.795 1 2626100 13913 8837 9412 9610 16675 16675 0.06294637202586273 FPSPILKVQY 10 Unmodified _FPSPILKVQY_ 0 0 0 nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3419799804688 2 596.342249 1190.66995 0.5499 0.00032793 0.76272 0.00045484 1.3126 0.00078277 596.3423071471839 66.868 0.32863 66.886 66.753 67.082 0.018028 41 15 3 0 0 0 0.0055438 2 36676 36676;36785 96.936 65.667 1 16091000 13914 3288 9413 9611 16676;16677 16676 0.08223748579644052 FPSPIRLEF 9 Unmodified _FPSPIRLEF_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3038330078125 2 553.305667 1104.59678 0.4055 0.00022436 -1.7893 -0.00099002 -1.3838 -0.00076566 553.3039857771045 80.536 0.4539 80.594 80.41 80.864 0.057587 55 18 4 0 0 0 0.062454 2 44451 44451;44569 41.956 5.8285 1 41165000 13915 853 9414 9612 16678;16679 16678 0.048666198569890184 FPSPSKTSL 9 Unmodified _FPSPSKTSL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2611694335938 2 482.260925 962.507297 0.12616 6.0842E-05 0.46476 0.00022414 0.59092 0.00028498 482.2611832272288 38.431 0.33186 38.144 37.93 38.262 -0.28687 24 14 2 0 0 0 0.13231 1 20200 20200 29.841 11.694 1 1866800 13916 8633 9415 9613 16680 16680 0.024543651776411934 FPSPSKTSL 9 Unmodified _FPSPSKTSL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2614135742188 2 482.260925 962.507297 0.76809 0.00037042 -0.65749 -0.00031708 0.1106 5.3336E-05 482.26047139543044 43.219 0.3218 38.454 38.243 38.565 -4.7648 29 22 2 0 0 0 0.044042 1 26201 26201 47.732 12.8 1 12497000 13917 8633 9415 9613 16681 16681 0.024543651776411934 FPSPSVATTY 10 Unmodified _FPSPSVATTY_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.264404296875 2 535.263665 1068.51278 NaN NaN NaN NaN NaN NaN NaN 54.009 1 53.542 53.042 54.042 -0.46664 0 0 0 0.28434 1 29245 29245 37.974 21.032 1 13918 3538 9416 9614 16682 16682 -0.018739560305675695 FPSPSVATTY 10 Unmodified _FPSPSVATTY_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2645263671875 2 535.263665 1068.51278 1.062 0.00056843 0.13655 7.3092E-05 1.1985 0.00064152 535.2636808004027 61.552 0.37083 55.376 55.167 55.537 -6.1757 28 18 2 0 0 0 0.04925 1 39639 39639 58.679 35.53 1 28780000 13919 3538 9416 9614 16683 16683 -0.018739560305675695 FPSQATHQL 9 Unmodified _FPSQATHQL_ 0 0 0 nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-3|NR4A1 nc|ENSG00000123358|P22736-2|NR4A1 nc|ENSG00000123358|P22736-2|NR4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7640380859375 2 514.761623 1027.50869 1.2509 0.0006439 0.14517 7.4725E-05 1.396 0.00071862 514.7616427332167 35.858 0.45817 31.665 31.44 31.899 -4.1928 41 28 2 0 0 0 0.078314 1 20857 20857 38.176 12.776 1 6854300 13920 3702 9417 9615 16684 16684 -0.003960007336218041 FPSSAATYYPF 11 Unmodified _FPSSAATYYPF_ 0 0 0 ENSG00000187742|ENST00000375807|SECISBP2;ENST00000339901.8_1_9:91933491-91940532:+|nuORF ENSG00000187742|ENST00000375807|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.7918701171875 2 625.790047 1249.56554 NaN NaN NaN NaN NaN NaN NaN 96.151 1 96.144 95.644 96.644 -0.007019 0 0 0 0.91154 1 53407 53407 6.7232 0.51738 1 13921 9591 9418 9616 16685 16685 -0.04925997967779949 FPSSHVLQL 9 Unmodified _FPSSHVLQL_ 0 0 0 ENSG00000179627|ENST00000342537|ZBTB42 ENSG00000179627|ENST00000342537|ZBTB42 ENSG00000179627|ENST00000342537|ZBTB42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2832641601562 2 514.282192 1026.54983 0.98785 0.00050803 0.20645 0.00010617 1.1943 0.00061421 514.2823670950744 57.601 0.61121 57.535 57.339 57.95 -0.066036 38 30 2 0 0 0 0.08691 1 31336 31336 36.127 14.38 1 1918900 13922 8849 9419 9617 16686 16686 0.03761760305860662 FPSSLAFSRI 10 Unmodified _FPSSLAFSRI_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17;nc|ENSG00000187775|Q9UFH2-4|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5450744628906 3 375.541475 1123.60259 -0.15064 -5.6571E-05 -0.086969 -3.266E-05 -0.23761 -8.9232E-05 375.54145242844265 41.454 0.39694 41.452 41.221 41.618 -0.0017929 53 18 4 0 0 0 0.29752 1 22101 22101 18.721 1.2786 1 89022000 13923 9593 9420 9618 16687 16687 0.04573718368669688 FPSSNVHVY 9 Unmodified _FPSSNVHVY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2589721679688 2 525.256174 1048.49779 0.38589 0.00020269 0.2385 0.00012527 0.62439 0.00032797 525.2562662726452 40.089 0.75457 40.089 39.616 40.37 0 91 37 3 0 0 0 0.010611 3 21352 21352;21466;21573 78.728 49.646 1 13114000 13924 5958 9421 9619 16688;16689;16690 16688 -0.024514031078979315 FPSSNVHVY 9 Unmodified _FPSSNVHVY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2566528320312 2 525.256174 1048.49779 0.4261 0.00022381 0.4591 0.00024114 0.8852 0.00046496 525.2563277942471 40.425 1.0748 40.128 39.649 40.724 -0.29716 159 51 4 0 0 0 0.0090524 5 21476 21158;21259;21368;21476;21580 85.642 53.525 1 24684000 13925 5958 9421 9619 16691;16692;16693;16694;16695 16694 -0.024514031078979315 FPSSNVHVY 9 Unmodified _FPSSNVHVY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2562255859375 2 525.256174 1048.49779 NaN NaN NaN NaN NaN NaN NaN 40.129 1 40.134 39.634 40.634 0.0050545 0 0 0 0.18351 1 21392 21392 32.786 13.347 1 13926 5958 9421 9619 16696 16696 -0.024514031078979315 FPSSNVHVY 9 Unmodified _FPSSNVHVY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2550659179688 2 525.256174 1048.49779 0.65833 0.00034579 -0.50806 -0.00026686 0.15027 7.8931E-05 525.2557136751631 45.549 1.229 40.594 40.086 41.315 -4.9549 209 82 3 0 0 0 0.01958 5 27666 27666;27803;27946;28085;28228 63.961 37.173 1 173930000 13927 5958 9421 9619 16697;16698;16699;16700;16701 16697 -0.024514031078979315 FPSSNVHVY 9 Unmodified _FPSSNVHVY_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 525.256174 1048.49779 0.31213 0.00016395 -0.41935 -0.00022027 -0.10723 -5.6322E-05 525.7581258556936 39.988 0.19458 39.993 39.832 40.026 0.0050545 -0.077302 -0.00086904 NaN 85.642 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 530280 13928 5958 9421 9619 -0.024514031078979315 FPSSSEVFY 9 Unmodified _FPSSSEVFY_ 0 0 0 ENST00000495414.5_1_3:143692156-143692375:+|nuORF ENST00000495414.5_1_3:143692156-143692375:+|nuORF ENST00000495414.5_1_3:143692156-143692375:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.742431640625 2 531.742565 1061.47058 0.3118 0.0001658 -2.1543 -0.0011455 -1.8425 -0.00097972 531.741801169605 62.907 0.41191 62.907 62.551 62.963 0 31 17 2 0 0 0 0.2001 2 35005 35005;35109 23.148 5.0134 1 2229100 13929 14352 9422 9620 16702;16703 16702 -0.05769931438931053 FPSSSPVNI 9 Unmodified _FPSSSPVNI_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2450561523438 2 474.245275 946.475997 0.46054 0.00021841 -0.20141 -9.5516E-05 0.25914 0.00012289 474.2451373054585 53.936 0.68905 53.469 53.152 53.841 -0.46664 59 34 2 0 0 0 0.10247 1 29259 29259 32.786 2.1491 1 12126000 13930 2488 9423 9621 16704 16704 0.0006179214353778661 FPSSSPVNI 9 Unmodified _FPSSSPVNI_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.245849609375 2 474.245275 946.475997 1.1015 0.00052238 -0.68404 -0.0003244 0.41746 0.00019798 474.24516966349245 61.571 0.66841 55.395 54.968 55.637 -6.1757 56 33 2 0 0 0 0.10247 1 39635 39635 32.786 0.4802 1 66857000 13931 2488 9423 9621 16705 16705 0.0006179214353778661 FPSSTPHSL 9 Unmodified _FPSSTPHSL_ 0 0 0 nc|ENSG00000134516|Q92608-2|DOCK2 nc|ENSG00000134516|Q92608-2|DOCK2 nc|ENSG00000134516|Q92608-2|DOCK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7686462402344 2 486.742899 971.471246 0.54658 0.00026604 0.74216 0.00036124 1.2887 0.00062729 486.74330597782205 46.16 0.50201 41.205 40.969 41.471 -4.9549 50 33 2 0 0 0 0.07019 1 28499 28499 28.487 1.6032 1 10616000 13932 16202 9424 9622 16706 16706 -0.01563091999230437 FPSSVAALRF 10 Unmodified _FPSSVAALRF_ 0 0 0 ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF ENSG00000181625|ENST00000330181|SLX1B ENSG00000181625|ENST00000330181|SLX1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3043823242188 2 547.803291 1093.59203 0.44296 0.00024265 -0.79062 -0.00043311 -0.34767 -0.00019045 547.8020873819636 69.367 0.24088 69.398 69.273 69.514 0.030914 33 14 3 0 0 0 2.255E-05 1 38105 38105 125.53 75.596 1 31438000 13933 4379 9425 9623 16707 16707 0.04897735714234841 FPSSVQAIDA 10 Unmodified _FPSSVQAIDA_ 0 0 0 ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8 ENST00000528662.6_1_11:102584081-102593757:-|nuORF ENST00000528662.6_1_11:102584081-102593757:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2625732421875 2 517.761289 1033.50803 0.22249 0.0001152 -0.77789 -0.00040276 -0.5554 -0.00028756 517.7611650674197 54.051 0.31928 53.584 53.427 53.746 -0.46664 27 15 2 0 0 0 0.31022 1 29226 29226 26.884 8.7487 1 3960200 13934 3350 9426 9624 16708 16708 -0.007388401733123828 FPSSVRIHL 9 Unmodified _FPSSVRIHL_ 0 0 0 nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5 nc|ENSG00000111445|P40937-2|RFC5 nc|ENSG00000111445|P40937-2|RFC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5387573242188 3 352.538064 1054.59236 0.78595 0.00027708 0.35471 0.00012505 1.1407 0.00040213 352.53801877934774 50.613 0.36173 50.559 50.347 50.708 -0.053875 36 17 3 0 0 0 0.15882 1 27326 27326 27.223 6.6423 1 2348800 13935 2790 9427 9625 16709 16709 0.06725155434105545 FPSSVTNSL 9 Unmodified _FPSSVTNSL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2431335449219 2 476.242732 950.470912 0.47145 0.00022453 1.1683 0.0005564 1.6398 0.00078092 476.24338346658607 52.845 0.54336 52.393 52.219 52.762 -0.45173 60 27 3 0 0 0 0.022193 1 28647 28647 61.357 30.721 1 3513100 13936 7181 9428 9626 16710 16710 -0.006305117190890996 FPSSVTNSL 9 Unmodified _FPSSVTNSL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF;ENST00000510711.5_1_5:38971963-39074479:-|nuORF ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.24365234375 2 476.242732 950.470912 1.0331 0.00049201 -0.086008 -4.096E-05 0.9471 0.00045105 476.2425188938897 60.442 0.34469 54.294 54.067 54.412 -6.1478 23 17 2 0 0 0 0.022193 1 38905 38905 61.357 21.4 1 16228000 13937 7181 9428 9626 16711 16711 -0.006305117190890996 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2506408691406 2 483.250557 964.486562 0.54341 0.00026261 -0.23342 -0.0001128 0.30999 0.0001498 483.2504004453955 53.416 0.81831 53.416 53.039 53.858 0 93 37 3 0 0 0 0.008678 3 29709 29472;29588;29709 88.904 42.883 1 23953000 13938 5669 9429 9627 16712;16713;16714 16714 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.491943359375 1 965.493838 964.486562 0.43186 0.00041696 -0.39989 -0.0003861 0.031964 3.0861E-05 965.4933630969871 53.394 0.49869 53.394 53.166 53.665 0 35 22 2 0 0 0 2.1289E-06 3 29601 29493;29601;29721 158.2 87.069 1 2909900 13939 5669 9429 9627 16715;16716;16717 16716 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2506103515625 2 483.250557 964.486562 0.46189 0.00022321 -0.15314 -7.4005E-05 0.30875 0.0001492 483.2503654324057 53.922 0.8707 53.455 53.05 53.921 -0.46664 144 43 4 0 0 0 0.012148 4 29148 29048;29148;29256;29365 68.081 28.109 1 113170000 13940 5669 9429 9627 16718;16719;16720;16721 16719 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.4935913085938 1 965.493838 964.486562 0.23553 0.0002274 -0.29212 -0.00028204 -0.056597 -5.4644E-05 965.4934017619623 53.997 0.67108 53.53 53.19 53.861 -0.46664 79 33 3 0 0 0 2.2513E-10 3 29207 29100;29207;29316 172.91 101.77 1 7907800 13941 5669 9429 9627 16722;16723;16724 16723 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2501220703125 2 483.250557 964.486562 -0.1598 -7.7224E-05 0.089013 4.3016E-05 -0.070789 -3.4209E-05 483.25056754327056 53.553 0.37924 53.49 53.262 53.641 -0.063423 31 22 2 0 0 0 0.0090851 2 29103 28998;29103 85.357 37.011 1 6670700 13942 5669 9429 9627 16725;16726 16726 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2508544921875 2 483.250557 964.486562 1.167 0.00056397 -0.15493 -7.4871E-05 1.0121 0.0004891 483.25041793736443 61.539 0.93299 55.363 54.91 55.843 -6.1757 94 47 2 0 0 0 0.00856 5 39384 39384;39517;39646;39781;39913 100.37 34.465 1 460330000 13943 5669 9429 9627 16727;16728;16729;16730;16731 16727 0.0028977479797731576 FPSSVTNTL 9 Unmodified _FPSSVTNTL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.494384765625 1 965.493838 964.486562 0.96886 0.00093543 -0.1299 -0.00012541 0.83896 0.00081001 965.4937309380059 61.504 0.64544 55.346 55.065 55.711 -6.158 60 32 2 0 0 0 2.2513E-10 4 39475 39475;39599;39722;39844 172.91 101.77 1 65658000 13944 5669 9429 9627 16732;16733;16734;16735 16732 0.0028977479797731576 FPSTAEHTL 9 Unmodified _FPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7484741210938 2 501.748182 1001.48181 0.082828 4.1559E-05 -0.30213 -0.00015159 -0.2193 -0.00011003 501.74790865376434 35.467 0.72603 35.467 35.09 35.816 0 76 36 3 0 0 0 0.0067112 3 18636 18636;18745;18846 112.59 53.944 1 14409000 13945 9027 9430 9628 16736;16737;16738 16736 -0.0188710934479559 FPSTAEHTL 9 Unmodified _FPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7485656738281 2 501.748182 1001.48181 0.43626 0.00021889 -0.65952 -0.00033091 -0.22326 -0.00011202 501.7477767574336 40.126 0.72625 35.597 35.356 36.082 -4.5294 101 56 2 0 0 0 0.0041763 3 23956 23814;23956;24086 120.45 65.677 1 37715000 13946 9027 9430 9628 16739;16740;16741 16740 -0.0188710934479559 FPSTAIKIQF 10 Unmodified _FPSTAIKIQF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3270263671875 2 576.326599 1150.63865 0.24956 0.00014383 0.30762 0.00017729 0.55717 0.00032111 576.3268407008445 72.519 0.56483 72.56 72.336 72.901 0.041733 73 26 3 0 0 0 0.0044938 2 39989 39881;39989 100.09 45.317 1 11689000 13947 7262 9431 9629 16742;16743 16743 0.06935175545504535 FPSTAIKIQF 10 Unmodified _FPSTAIKIQF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3272094726562 2 576.326599 1150.63865 0.15662 9.0262E-05 1.6791 0.00096771 1.8357 0.001058 576.3276207864393 84.813 0.18508 78.638 78.564 78.749 -6.1757 15 10 2 0 0 0 0.060508 1 55818 55818 55.503 23.197 1 9472900 13948 7262 9431 9629 16744 16744 0.06935175545504535 FPSTAIKIQF 10 Unmodified _FPSTAIKIQF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3278198242188 2 576.326599 1150.63865 0.14462 8.335E-05 1.352 0.00077918 1.4966 0.00086253 576.3275351283177 85.082 0.27173 78.907 78.72 78.992 -6.1757 23 15 2 0 0 0 0.024351 1 55966 55966 71.708 31.751 1 11234000 13949 7262 9431 9629 16745 16745 0.06935175545504535 FPSTAIKIQF 10 Unmodified _FPSTAIKIQF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MSMS AL20221201_MKP_PDAC_01 4 576.3073120117188 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 84.607 1 78.431 77.931 78.931 -6.1757 0 0 0 0.40102 1 55674 55674 31.268 9.5217 1 13950 7262 9431 9629 16746 16746 0.06935175545504535 FPSTAIKIQF 10 Unmodified _FPSTAIKIQF_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MSMS AL20221201_MKP_PDAC_01 4 576.322998046875 2 576.326599 1150.63865 NaN NaN NaN NaN NaN NaN NaN 85.301 1 79.125 78.625 79.625 -6.1757 0 0 0 0.095408 1 56169 56169 51.63 23.143 1 13951 7262 9431 9629 16747 16747 0.06935175545504535 FPSTNIKITF 10 Unmodified _FPSTNIKITF_ 0 0 0 TBCD-FOXK2|1|fusion;ENST00000570585.1_1_17:80478172-80529779:+|nuORF;nc|ENSG00000141568|Q01167-2|FOXK2;ENSG00000141568|ENST00000335255|FOXK2;ENST00000527313.6_1_17:80477872-80529633:+|nuORF;nc|ENSG00000141568|Q01167-3|FOXK2 TBCD-FOXK2|1|fusion;nc|ENSG00000141568|Q01167-2|FOXK2 TBCD-FOXK2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3241577148438 2 584.324057 1166.63356 1.5302 0.00089411 -0.13849 -8.0925E-05 1.3917 0.00081319 584.3236674766522 70.942 0.79066 70.977 70.592 71.382 0.035515 94 35 4 0 0 0 0.010306 3 39074 38971;39074;39179 87.123 49.149 1 11357000 13952 30184;5354 9432 9630 16748;16749;16750 16749 0.05690871682895704 FPSTTTPQI 9 Unmodified _FPSTTTPQI_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2587585449219 2 496.258382 990.502212 0.52655 0.0002613 -0.69647 -0.00034563 -0.16992 -8.4324E-05 496.2581055605316 52.63 0.88412 52.196 51.649 52.533 -0.43367 71 44 3 0 0 0 0.0095811 3 28404 28231;28404;28571 81.613 41.656 1 4610300 13953 5078 9433 9631 16751;16752;16753 16752 0.006580613150163117 FPSTVSTVY 9 Unmodified _FPSTVSTVY_ 0 0 0 ENST00000566637.5_1_16:88776385-88780917:+|nuORF;nc|ENSG00000174177|Q2VPK5-3|CTU2;nc|ENSG00000174177|Q2VPK5-5|CTU2;ENSG00000174177|ENST00000453996|CTU2 ENST00000566637.5_1_16:88776385-88780917:+|nuORF ENST00000566637.5_1_16:88776385-88780917:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.7538146972656 2 500.752933 999.491313 NaN NaN NaN NaN NaN NaN NaN 61.532 1 55.357 54.857 55.857 -6.1757 0 0 0 0.036587 1 39640 39640 63.563 36.679 1 13954 8399 9434 9632 16754 16754 -0.00845341059277871 FPSVLCLCQI 10 Unmodified _FPSVLCLCQI_ 0 0 0 REV__ENSG00000061492|ENST00000506684|WNT8A REV__ENSG00000061492|ENST00000506684|WNT8A MSMS AL20221201_MKP_PDAC_01 4 561.8203125 2 561.787938 1121.56132 NaN NaN NaN NaN NaN NaN NaN 52.703 1 46.969 46.469 47.469 -5.7345 0 0 0 0.41201 1 33271 33271 30.637 1.555 1 + 13955 17331 9435 9633 16755 16755 0.005404980133107529 FPSVSSPHIF 10 Unmodified _FPSVSSPHIF_ 0 0 0 ENSG00000167595|ENST00000646935|PROSER3 ENSG00000167595|ENST00000646935|PROSER3 ENSG00000167595|ENST00000646935|PROSER3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.28955078125 2 559.287474 1116.5604 0.71521 0.00040001 -0.95446 -0.00053382 -0.23925 -0.00013381 559.2877400942891 77.43 0.22821 71.255 71.134 71.362 -6.1757 22 12 2 0 0 0 0.31022 1 50688 50688 26.884 0.61551 1 10501000 13956 7632 9436 9634 16756 16756 0.0067774296028346726 FPSVVLVGL 9 Unmodified _FPSVVLVGL_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000512397.1_1_4:17579088-17584030:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.78759765625 2 465.786579 929.558604 1.4712 0.00068527 0.34503 0.00016071 1.8162 0.00084598 465.7865483091204 100.8 0.11721 94.622 94.57 94.688 -6.1757 12 7 2 0 0 0 0.012158 1 67513 67513 74.396 23.541 1 20763000 13957 261 9437 9635 16757 16757 0.0910073394235269 FPSVVLVGL 9 Unmodified _FPSVVLVGL_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000512397.1_1_4:17579088-17584030:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 930.5670776367188 1 930.565881 929.558604 1.5389 0.0014321 -0.38205 -0.00035552 1.1569 0.0010765 930.5662081599054 100.81 0.099892 94.631 94.57 94.67 -6.1757 14 6 3 0 0 0 0.0083087 1 67541 67541 97.075 19.09 1 25844000 13958 261 9437 9635 16758 16758 0.0910073394235269 FPTDELAYTF 10 Unmodified _FPTDELAYTF_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS AL20221201_MKP_PDAC_01 4 602.2808837890625 2 602.282054 1202.54956 NaN NaN NaN NaN NaN NaN NaN 79.775 1 73.6 73.1 74.1 -6.1757 0 0 0 0.19054 1 52303 52303 43.858 2.0187 1 + 13959 24211 9438 9636 16759 16759 -0.043617042046889765 FPTDPKVVVY 10 Unmodified _FPTDPKVVVY_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8184204101562 2 582.818607 1163.62266 0.040689 2.3715E-05 -0.54126 -0.00031546 -0.50057 -0.00029174 582.8183947661039 54.756 0.43611 54.289 54.084 54.52 -0.46664 45 21 3 0 0 0 0.061704 2 29743 29636;29743 55.235 31.408 1 9264700 13960 2879 9439 9637 16760;16761 16761 0.04739469308628941 FPTDPKVVVY 10 Unmodified _FPTDPKVVVY_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;nc|ENSG00000112297|Q9Y4K1-2|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8200073242188 2 582.818607 1163.62266 1.0682 0.00062259 -0.3349 -0.00019519 0.73334 0.0004274 582.8185139340113 61.108 0.46939 54.961 54.686 55.156 -6.1478 42 24 2 0 0 0 0.039874 2 39360 39231;39360 63.227 34.146 1 41952000 13961 2879 9439 9637 16762;16763 16763 0.04739469308628941 FPTDPSKCVEY 11 Carbamidomethyl (C) _FPTDPSKC(Carbamidomethyl (C))VEY_ FPTDPSKC(1)VEY FPTDPSKC(76)VEY 0 1 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.8031005859375 2 671.802828 1341.5911 0.47793 0.00032107 1.7926 0.0012042 2.2705 0.0015253 671.8031385781535 42.48 0.5172 42.48 42.238 42.756 0 68 25 4 0 0 0 0.004841 2 23073 22964;23073 75.571 58.458 1 6654400 13962 7364 9440 9638 16764;16765 16765 720 -0.06602891507645836 FPTDPSKCVEY 11 Carbamidomethyl (C) _FPTDPSKC(Carbamidomethyl (C))VEY_ FPTDPSKC(1)VEY FPTDPSKC(110)VEY 0 1 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.305419921875 2 671.802828 1341.5911 0.12601 8.4656E-05 0.12023 8.0772E-05 0.24625 0.00016543 672.3044406055952 42.87 0.50615 42.559 42.314 42.82 -0.31039 54 22 3 0 0 0 1.4047E-08 2 22840 22735;22840 106.37 84.828 1 8414000 13963 7364 9440 9638 16766;16767 16767 720 -0.06602891507645836 FPTDPSKCVEY 11 Carbamidomethyl (C) _FPTDPSKC(Carbamidomethyl (C))VEY_ FPTDPSKC(1)VEY FPTDPSKC(200)VEY 0 1 0 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 ENSG00000165630|ENST00000378572|PRPF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.8025512695312 2 671.802828 1341.5911 0.4127 0.00027725 -0.22842 -0.00015345 0.18429 0.0001238 671.8027809003439 49.149 0.44791 43.753 43.391 43.839 -5.3961 54 29 2 0 0 0 1.0697999999999998E-52 2 30638 30502;30638 200.78 150.85 1 53470000 13964 7364 9440 9638 16768;16769 16769 720 -0.06602891507645836 FPTEADLEDF 10 Unmodified _FPTEADLEDF_ 0 0 0 nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2625732421875 2 592.261319 1182.50808 0.432 0.00025586 1.2764 0.00075598 1.7084 0.0010118 592.2619896237032 73.795 0.53876 73.795 73.524 74.062 0 64 22 4 0 0 0 0.061704 2 41081 40989;41081 74.929 51.781 1 3160000 13965 1387 9441 9639 16770;16771 16771 -0.07586884964007368 FPTEADLEDF 10 Unmodified _FPTEADLEDF_ 0 0 0 nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2614135742188 2 592.261319 1182.50808 0.37067 0.00021954 -1.0453 -0.00061907 -0.6746 -0.00039954 592.2608808606793 82.125 0.5788 75.949 75.618 76.197 -6.1757 69 31 3 0 0 0 0.061704 3 53888 53763;53888;54013 74.929 44.704 1 20057000 13966 1387 9441 9639 16772;16773;16774 16773 -0.07586884964007368 FPTEADLEDF 10 Unmodified _FPTEADLEDF_ 0 0 0 nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 592.261319 1182.50808 0.74325 0.0004402 -0.11404 -6.7543E-05 0.62921 0.00037266 592.2606515816194 74.317 0.4201 73.841 73.667 74.087 -0.47588 0.023074 -0.0013257 NaN 74.929 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 607990 13967 1387 9441 9639 -0.07586884964007368 FPTFVTYT 8 Unmodified _FPTFVTYT_ 0 0 0 REV__ENSG00000171936|ENST00000641646|OR10H3 REV__ENSG00000171936|ENST00000641646|OR10H3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2428588867188 2 488.244744 974.474934 1.1354 0.00055433 -3.1986 -0.0015617 -2.0632 -0.0010074 488.24333911842507 100.41 0.1501 94.234 94.141 94.291 -6.1757 15 9 2 0 0 0 0.44122 1 67156 67156 40.449 6.2612 1 17678000 + 13968 22612 9442 9640 16775 16775 -0.013324222253913831 FPTGPCYPCAV 11 Unmodified _FPTGPCYPCAV_ 0 0 0 REV__ENST00000328257.12_1_11:73965393-73965618:+|nuORF REV__ENST00000328257.12_1_11:73965393-73965618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7527465820312 2 577.754095 1153.49364 -0.31783 -0.00018363 -1.1309 -0.00065335 -1.4487 -0.00083698 577.753438188926 33.592 0.80108 33.592 33.544 34.345 0 91 46 3 0 0 0 0.35243 2 17632 17632;17745 24.021 3.5669 1 8970600 + 13969 25579 9443 9641 16776;16777 16776 -0.07696951917500883 FPTGTKGHLL 10 Unmodified _FPTGTKGHLL_ 0 0 0 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5376281738281 3 357.537953 1069.59203 -0.27062 -9.6757E-05 0.77684 0.00027775 0.50622 0.00018099 357.53814635398123 41.887 0.6469 41.878 41.395 42.042 -0.0088196 44 30 2 0 0 0 0.65282 1 22464 22464 4.7159 0 1 15109000 13970 2542 9444 9642 16778 16778 0.06001735714244205 FPTGTPPPL 9 Unmodified _FPTGTPPPL_ 0 0 0 ENST00000480548.5_1_1:67137634-67156055:+|nuORF;nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1 ENST00000480548.5_1_1:67137634-67156055:+|nuORF ENST00000480548.5_1_1:67137634-67156055:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7525939941406 2 463.752736 925.490919 1.1588 0.00053739 -1.1711 -0.0005431 -0.012293 -5.7011E-06 463.7523046110004 49.944 0.86012 49.895 49.331 50.191 -0.048824 89 42 4 0 0 0 0.12841 1 26896 26896 30.225 2.596 1 2335300 13971 3373 9445 9643 16779 16779 0.025192840115323634 FPTGYANPFDG 11 Unmodified _FPTGYANPFDG_ 0 0 0 REV__nc|ENSG00000075151|O43432|EIF4G3 REV__nc|ENSG00000075151|O43432|EIF4G3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.2656860351562 2 593.264196 1184.51384 NaN NaN NaN NaN NaN NaN NaN 53.011 1 52.947 52.447 53.447 -0.063423 0 0 0 0.75116 1 28735 28735 14.405 5.0579 1 + 13972 17562 9446 9644 16780 16780 -0.07103741661671847 FPTHINRPWK 10 Unmodified _FPTHINRPWK_ 0 0 0 ENST00000475019.1_1_3:145914331-145918851:-|nuORF ENST00000475019.1_1_3:145914331-145918851:-|nuORF ENST00000475019.1_1_3:145914331-145918851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3544311523438 2 648.354014 1294.69348 0.079006 5.1224E-05 0.11744 7.6144E-05 0.19645 0.00012737 648.8555447211221 35.955 0.1477 35.98 35.885 36.033 0.024967 11 6 3 0 0 0 0.54684 1 19040 19040 13.906 8.6754 1 2465800 13973 13948 9447 9645 16781 16781 0.057916071367799304 FPTISLEF 8 Unmodified _FPTISLEF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 953.4971923828125 1 953.497861 952.490584 0.28228 0.00026915 0.57993 0.00055296 0.86221 0.00082211 953.4986419728897 97.028 0.28041 96.723 96.586 96.867 -0.30472 25 14 2 0 0 0 0.24071 1 52945 52945 63.563 16.642 1 900240 13974 1279 9448 9646 16782 16782 0.012438642916777098 FPTISLEF 8 Unmodified _FPTISLEF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.5011596679688 1 953.497861 952.490584 0.94968 0.00090551 -0.15396 -0.0001468 0.79572 0.00075871 953.4976094580752 100.39 0.20794 94.218 94.122 94.33 -6.1757 39 12 4 0 0 0 0.094359 1 67070 67070 101.72 37.486 1 401680000 13975 1279 9448 9646 16783 16783 0.012438642916777098 FPTISLEF 8 Unmodified _FPTISLEF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2525024414062 2 477.252569 952.490584 1.1912 0.0005685 -0.43347 -0.00020687 0.75771 0.00036162 477.2522415995358 100.39 0.24177 94.215 94.103 94.345 -6.1757 42 14 4 0 0 0 0.2655 1 67075 67075 59.795 19.347 1 309360000 13976 1279 9448 9646 16784 16784 0.012438642916777098 FPTLETVF 8 Unmodified _FPTLETVF_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.500244140625 1 953.497861 952.490584 0.28228 0.00026915 0.57993 0.00055296 0.86221 0.00082211 953.4986419728897 97.028 0.28041 96.723 96.586 96.867 -0.30472 25 14 2 0 0 0 0.77907 1 52962 52962 10.183 0 1 900240 13977 5656 9449 9647 16785 16785 0.012438642916777098 FPTNEGEALL 10 Unmodified _FPTNEGEALL_ 0 0 0 REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7750854492188 2 545.774396 1089.53424 0.23956 0.00013074 -0.086341 -4.7123E-05 0.15321 8.3621E-05 545.7742807838991 76.201 0.30577 76.201 76.064 76.37 0 35 12 3 0 0 0 0.54684 1 42347 42347 13.906 13.906 1 3874900 + 13978 21423 9450 9648 16786 16786 -0.006945710018726459 FPTPRCRFVF 10 Unmodified _FPTPRCRFVF_ 0 0 0 ENST00000306353.7_2_2:85825849-85826182:-|nuORF ENST00000306353.7_2_2:85825849-85826182:-|nuORF ENST00000306353.7_2_2:85825849-85826182:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3325805664062 2 635.331693 1268.64883 0.15283 9.7098E-05 0.15848 0.00010069 0.31131 0.00019778 635.3322665764601 64.796 0.17255 64.31 64.208 64.381 -0.48512 12 7 2 0 0 0 0.69064 1 35385 35385 3.9444 0 1 845230 13979 11625 9451 9649 16787 16787 0.025254599990830684 FPTQALNFAF 10 Unmodified _FPTQALNFAF_ 0 0 0 ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151729|ENST00000281456|SLC25A4 ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2964477539062 2 578.295299 1154.57605 2.2242 0.0012862 0.073551 4.2534E-05 2.2977 0.0013288 578.2961315613821 93.992 0.47479 94.006 93.737 94.212 0.014244 43 18 3 0 0 0 0.36296 2 52267 52196;52267 23.79 3.0078 1 2920600 13980 295;7835 9452 9650 16788;16789 16789 0.004940294773177811 FPTRTARF 8 Unmodified _FPTRTARF_ 0 0 0 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2734680175781 2 498.274701 994.534849 0.042705 2.1279E-05 -0.68616 -0.00034189 -0.64345 -0.00032062 498.27511966090844 32.978 0.36375 33.008 32.822 33.186 0.029743 38 15 3 0 0 0 0.46677 2 17276 17276;17380 37.974 19.839 1 4419600 13981 10428 9453 9651 16790;16791 16790 0.03736313228512245 FPTRTARF 8 Unmodified _FPTRTARF_ 0 0 0 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 MSMS AL20221201_MKP_PDAC_01 4 498.2744750976562 2 498.274701 994.534849 NaN NaN NaN NaN NaN NaN NaN 36.886 1 32.602 32.102 33.102 -4.2835 0 0 0 0.59568 1 21586 21586 34.402 13.531 1 13982 10428 9453 9651 16792 16792 0.03736313228512245 FPTSAFDIKF 10 Unmodified _FPTSAFDIKF_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3291625976562 2 586.802957 1171.59136 0.89479 0.00052506 0.00085089 4.993E-07 0.89564 0.00052556 586.8029936295671 80.807 0.43471 80.865 80.677 81.111 0.057587 29 16 2 0 0 0 0.21618 1 44682 44682 26.268 13.737 1 2269800 13983 4483 9454 9652 16793 16793 0.012428962744934324 FPTSAFDIKF 10 Unmodified _FPTSAFDIKF_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8065795898438 2 586.802957 1171.59136 1.147 0.00067306 3.114 0.0018273 4.261 0.0025004 586.8043845366363 95.437 0.3792 89.261 89.004 89.383 -6.1757 28 21 2 0 0 0 0.17714 1 63121 63121 36.506 13.77 1 11923000 13984 4483 9454 9652 16794 16794 0.012428962744934324 FPTSHSVLY 9 Unmodified _FPTSHSVLY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7681274414062 2 525.766374 1049.5182 0.19491 0.00010248 0.40035 0.00021049 0.59526 0.00031297 525.7665503075323 46.119 0.56855 45.782 45.465 46.034 -0.33664 73 29 4 0 0 0 0.0083087 3 24543 24543;24644;24748 97.075 61.03 1 19034000 13985 985 9455 9653 16795;16796;16797 16795 -0.004582324480907118 FPTSHSVLY 9 Unmodified _FPTSHSVLY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7672729492188 2 525.766374 1049.5182 NaN NaN NaN NaN NaN NaN NaN 45.678 1 45.65 45.15 46.15 -0.028011 0 0 0 0.13852 1 24548 24548 38.151 17.28 1 13986 985 9455 9653 16798 16798 -0.004582324480907118 FPTSHSVLYM 10 Unmodified _FPTSHSVLYM_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2886962890625 2 591.286617 1180.55868 2.0003 0.0011828 0.48602 0.00028738 2.4864 0.0014702 591.2866835432184 62.825 0.33889 56.65 56.398 56.737 -6.1757 22 16 2 0 0 0 0.024981 1 40600 40600 71.134 42.052 1 7776600 13987 985 9456 9654 16799 16799 -0.02437634119996801 FPTTKTYFPH 10 Unmodified _FPTTKTYFPH_ 0 0 0 CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 CON__P01966 CON__P01966 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5450134277344 3 413.544996 1237.61316 -0.04082 -1.6881E-05 0.28646 0.00011846 0.24564 0.00010158 413.5450032132532 41.14 0.42791 41.139 40.891 41.319 -0.0017929 43 20 3 0 0 0 0.1552 2 21933 21933;22046 39.213 29.669 1 3684400 + 13988 156 9457 9655 16800;16801 16800 0.0038570102308312926 FPTTKTYFPH 10 Unmodified _FPTTKTYFPH_ 0 0 0 CON__P01966;ENST00000487791.1_1_16:226802-227261:+|nuORF;ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2 CON__P01966 CON__P01966 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 413.544996 1237.61316 0.87247 0.00036081 0.017665 7.3053E-06 0.89013 0.00036811 413.5450389167795 46.033 0.45201 41.078 40.774 41.226 -4.9549 -0.030101 -0.00025369 NaN 39.213 75 29 3 NaN NaN NaN NaN 0 NaN NaN 0 14643000 + 13989 156 9457 9655 0.0038570102308312926 FPTTMFMCLD 10 Unmodified _FPTTMFMCLD_ 0 0 0 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2547607421875 2 603.255613 1204.49667 0.24545 0.00014807 -0.46989 -0.00028346 -0.22443 -0.00013539 603.2552884555208 73.871 0.37885 73.871 73.615 73.994 0 26 15 2 0 0 0 0.62068 1 41077 41077 10.074 1.4806 1 486990 13990 10151 9458 9656 16802 16802 -0.09739444854994872 FPTTYYQNAT 10 Unmodified _FPTTYYQNAT_ 0 0 0 ENSG00000261949|ENST00000610896|GFY ENSG00000261949|ENST00000610896|GFY ENSG00000261949|ENST00000610896|GFY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.279541015625 2 603.277303 1204.54005 NaN NaN NaN NaN NaN NaN NaN 74.051 1 73.575 73.075 74.075 -0.47588 0 0 0 0.91523 1 40532 40532 7.2892 0 1 13991 10845 9459 9657 16803 16803 -0.05403472490183958 FPTVQHQEL 9 Unmodified _FPTVQHQEL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.28173828125 2 549.782556 1097.55056 -0.14838 -8.1577E-05 -1.2322 -0.00067745 -1.3806 -0.00075903 549.7813501595186 40.894 0.19744 40.894 40.807 41.005 0 42 27 2 0 0 0 0.015816 1 21989 21989 80.676 29.046 1 14395000 13992 3315 9460 9658 16804 16804 0.005685549549070856 FPTVQHQEL 9 Unmodified _FPTVQHQEL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7828369140625 2 549.782556 1097.55056 0.047607 2.6173E-05 0.85372 0.00046936 0.90133 0.00049554 549.7826462894359 41.291 0.26934 40.988 40.798 41.067 -0.30304 23 12 3 0 0 0 0.0094097 1 21850 21850 82.529 34.781 1 5658900 13993 3315 9460 9658 16805 16805 0.005685549549070856 FPTVQHQEL 9 Unmodified _FPTVQHQEL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7835083007812 2 549.782556 1097.55056 0.44604 0.00024522 0.65441 0.00035979 1.1005 0.00060501 549.7830484710408 46.304 0.25912 41.223 41.1 41.359 -5.0805 29 17 2 0 0 0 0.008513 1 28578 28578 99.755 52.007 1 54819000 13994 3315 9460 9658 16806 16806 0.005685549549070856 FPTVVIYVM 9 Unmodified _FPTVVIYVM_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MSMS AL20221201_MKP_PDAC_01 4 534.7953491210938 2 534.793546 1067.57254 NaN NaN NaN NaN NaN NaN NaN 100.83 1 94.655 94.155 95.155 -6.1757 0 0 0 0.043758 1 67532 67532 60.39 33.506 1 13995 10102 9461 9659 16807 16807 0.041456433790926894 FPTVVSTSFI 10 Unmodified _FPTVVSTSFI_ 0 0 0 nc|ENSG00000162877|Q6GTS8-2|PM20D1;ENST00000460624.5_1_1:205801865-205819200:-|nuORF;ENSG00000162877|ENST00000367136|PM20D1 nc|ENSG00000162877|Q6GTS8-2|PM20D1 nc|ENSG00000162877|Q6GTS8-2|PM20D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2978515625 2 549.297507 1096.58046 0.49039 0.00026937 0.92352 0.00050729 1.4139 0.00077666 549.2978883758891 84.34 0.31064 83.84 83.666 83.976 -0.49962 36 13 4 0 0 0 0.52888 1 46105 46105 14.838 1.3304 1 1688300 13996 6923 9462 9660 16808 16808 0.03603493900232024 FPTYGGITF 9 Unmodified _FPTYGGITF_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7503662109375 2 501.750193 1001.48583 1.1273 0.00056561 -0.054319 -2.7254E-05 1.073 0.00053835 501.75031057957335 88.794 0.51559 82.619 82.349 82.865 -6.1757 46 28 2 0 0 0 0.016184 2 58551 58551;58678 67.344 16.489 1 10248000 13997 2642 9463 9661 16809;16810 16809 -0.014850198510885093 FPTYPVPHY 9 Unmodified _FPTYPVPHY_ 0 0 0 ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.775390625 2 560.776742 1119.53893 NaN NaN NaN NaN NaN NaN NaN 55.829 1 55.76 55.26 56.26 -0.068737 0 0 0 0.096036 1 30348 30348 44.407 29.825 1 13998 7309 9464 9662 16811 16811 -0.01605642068443558 FPTYPVPHY 9 Unmodified _FPTYPVPHY_ 0 0 0 ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7742919921875 2 560.776742 1119.53893 NaN NaN NaN NaN NaN NaN NaN 56.019 1 55.95 55.45 56.45 -0.068737 0 0 0 0.40995 1 30456 30456 19.439 7.7987 1 13999 7309 9464 9662 16812 16812 -0.01605642068443558 FPVAEDISL 9 Unmodified _FPVAEDISL_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7601623535156 2 495.760758 989.506963 0.2396 0.00011878 0.82706 0.00041002 1.0667 0.00052881 495.7610112224336 75.577 0.44076 75.577 75.393 75.834 0 27 18 2 0 0 0 0.18465 1 42009 42009 24.674 6.5389 1 881460 14000 1795 9465 9663 16813 16813 0.011789454577638026 FPVAGQKLIY 10 Unmodified _FPVAGQKLIY_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;RAD23B|p.N68Tfs*7|1|0.19|ENSG00000119318|chr9:107302085-107302085|A/-|frameshift_variant;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.330078125 2 568.329142 1134.64373 0.91637 0.0005208 0.26119 0.00014844 1.1776 0.00066924 568.3293050167917 57.551 0.76877 57.485 57.181 57.95 -0.066036 122 38 4 0 0 0 0.01132 4 31297 31199;31297;31396;31497 85.272 47.298 1 34374000 14001 8821;3422 9466 9664 16814;16815;16816;16817 16815 0.08179479408136103 FPVAGQKLIY 10 Unmodified _FPVAGQKLIY_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;RAD23B|p.N68Tfs*7|1|0.19|ENSG00000119318|chr9:107302085-107302085|A/-|frameshift_variant;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.332275390625 2 568.329142 1134.64373 1.5564 0.00088456 0.44642 0.00025371 2.0028 0.0011383 568.329800302227 64.447 0.33987 58.272 58.072 58.412 -6.1757 24 18 2 0 0 0 0.01132 1 41772 41772 85.272 51.085 1 12543000 14002 8821;3422 9466 9664 16818 16818 0.08179479408136103 FPVAGQKLIY 10 Unmodified _FPVAGQKLIY_ 0 0 0 nc|ENSG00000179262|P54725-2|RAD23A;nc|ENSG00000179262|P54725-3|RAD23A;ENSG00000179262|ENST00000586534|RAD23A;RAD23B|p.N68Tfs*7|1|0.19|ENSG00000119318|chr9:107302085-107302085|A/-|frameshift_variant;ENST00000588329.5_1_19:13056723-13059660:+|nuORF;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A;ENSG00000119318|ENST00000358015|RAD23B nc|ENSG00000179262|P54725-2|RAD23A MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 568.329142 1134.64373 1.2438 0.00070686 -0.27045 -0.00015371 0.9733 0.00055316 568.3288591061629 63.607 1.1107 57.431 57.075 58.186 -6.1757 -0.027072 -0.00043019 NaN 85.272 173 61 4 NaN NaN NaN NaN 0 NaN NaN 0 94780000 14003 8821;3422 9466 9664 0.08179479408136103 FPVATSMMSL 10 Unmodified _FPVATSMMSL_ 0 0 0 REV__ENST00000446790.5_1_7:90338695-90339238:+|nuORF REV__ENST00000446790.5_1_7:90338695-90339238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2658081054688 2 542.264296 1082.51404 0.51594 0.00027977 -1.9739 -0.0010704 -1.4579 -0.00079058 542.263951307806 74.317 0.60568 73.841 73.504 74.11 -0.47588 50 25 3 0 0 0 0.48834 2 40648 40648;40746 16.942 3.4344 1 1453600 + 14004 27147 9467 9665 16819;16820 16819 -0.023917812576655706 FPVCLSLPV 9 Unmodified _FPVCLSLPV_ 0 0 0 REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF REV__ENST00000563328.4_1_16:72822270-72822732:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.5338745117188 1 974.537951 973.530675 0.50081 0.00048806 -2.6904 -0.0026219 -2.1896 -0.0021338 974.5349623953787 101.54 0.086327 95.361 95.309 95.395 -6.1757 5 3 2 0 0 0 0.03327 1 68136 68136 53.576 3.9067 1 6017500 + 14005 28872 9468 9666 16821 16821 0.04285087690595901 FPVDEVSITY 10 Unmodified _FPVDEVSITY_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2911987304688 2 585.289879 1168.56521 1.2653 0.00074059 -0.8092 -0.00047362 0.45614 0.00026697 585.2898542324635 79.603 0.64323 73.428 73.148 73.791 -6.1757 88 38 3 0 0 0 0.024981 3 52193 52058;52193;52323 71.134 49.387 1 31286000 14006 3658 9469 9667 16822;16823;16824 16823 -0.012334176876265701 FPVDGVPSGAS 11 Unmodified _FPVDGVPSGAS_ 0 0 0 REV__ENSG00000066084|ENST00000301180|DIP2B REV__ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7545166015625 2 516.753464 1031.49238 0.22528 0.00011641 1.4352 0.00074167 1.6605 0.00085808 516.7542783509714 64.703 0.87449 64.703 64.345 65.219 0 94 41 3 0 0 0 0.30985 1 36197 36197 26.268 8.1218 1 3766100 + 14007 17395 9470 9668 16825 16825 -0.022111266903721116 FPVDPPSG 8 Unmodified _FPVDPPSG_ 0 0 0 ENST00000538042.1_1_11:63766130-63766847:-|nuORF ENST00000538042.1_1_11:63766130-63766847:-|nuORF ENST00000538042.1_1_11:63766130-63766847:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 815.3930053710938 1 815.393396 814.386119 1.1727 0.00095622 -0.019637 -1.6012E-05 1.1531 0.00094021 815.3933423777761 83.962 0.46533 77.786 77.548 78.013 -6.1757 37 24 2 0 0 0 0.5284 1 55112 55112 32.117 5.7757 1 12347000 14008 15002 9471 9669 16826 16826 -0.028498374650439473 FPVDPQRMSIF 11 Unmodified _FPVDPQRMSIF_ 0 0 0 ENSG00000139684|ENST00000378720|ESD ENSG00000139684|ENST00000378720|ESD ENSG00000139684|ENST00000378720|ESD MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3426513671875 2 668.839548 1335.66454 0.60437 0.00040423 1.2561 0.00084016 1.8605 0.0012444 669.3416580650523 91.526 0.49413 85.351 84.975 85.469 -6.1757 41 27 2 0 0 0 0.012228 2 60390 60390;60531 65.474 39.206 1 6157200 14009 5178 9472 9670 16827;16828 16827 0.010137017254919556 FPVEEKAVEY 10 Unmodified _FPVEEKAVEY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.8027954101562 2 605.803154 1209.59175 -0.3154 -0.00019107 0.38145 0.00023109 0.066053 4.0015E-05 605.8029927279888 44.112 0.27921 44.112 44.005 44.284 0 31 14 3 0 0 0 0.0041527 3 23953 23953;24050;24059 114.5 70.724 1 15780000 14010 10085 9473 9671 16829;16830;16831 16829 -0.004657287962800183 FPVEEKAVEY 10 Unmodified _FPVEEKAVEY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.803466796875 2 605.803154 1209.59175 0.74376 0.00045057 0.82148 0.00049766 1.5652 0.00094823 605.8031629664185 50.34 0.55097 44.801 44.466 45.017 -5.5391 81 35 3 0 0 0 0.0041527 2 31569 31432;31569 114.5 64.564 1 38327000 14011 10085 9473 9671 16832;16833 16833 -0.004657287962800183 FPVEEKAVEYY 11 Unmodified _FPVEEKAVEYY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.8367919921875 2 687.334818 1372.65508 0.17628 0.00012116 0.26602 0.00018284 0.44229 0.000304 687.3343985957786 50.714 0.12069 50.714 50.603 50.724 0 8 5 2 0 0 0 0.14665 1 27957 27957 37.075 22.236 1 5121400 14012 10085 9474 9672 16834 16834 -0.016337880790388226 FPVEEKAVEYY 11 Unmodified _FPVEEKAVEYY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.3346557617188 2 687.334818 1372.65508 0.28866 0.00019841 0.060544 4.1614E-05 0.34921 0.00024002 687.8364999810655 50.79 0.25169 50.79 50.744 50.996 0 29 15 2 0 0 0 0.014658 1 28077 28077 62.869 37.987 1 8156000 14013 10085 9474 9672 16835 16835 -0.016337880790388226 FPVEEKAVEYY 11 Unmodified _FPVEEKAVEYY_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.8368530273438 2 687.334818 1372.65508 1.0193 0.00070059 -0.25183 -0.00017309 0.76745 0.0005275 687.835902396121 57.591 0.34483 51.563 51.372 51.717 -6.0275 35 18 3 0 0 0 0.00053139 1 36783 36783 88.364 52.751 1 23075000 14014 10085 9474 9672 16836 16836 -0.016337880790388226 FPVEHVQLL 9 Unmodified _FPVEHVQLL_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.30615234375 2 541.305667 1080.59678 -0.0091858 -4.9723E-06 0.68103 0.00036864 0.67184 0.00036367 541.3059485061324 66.417 0.64351 65.933 65.651 66.294 -0.48323 85 33 4 0 0 0 0.047788 2 36160 36160;36272 45.7 19.358 1 43550000 14015 2601 9475 9673 16837;16838 16837 0.059706198569983826 FPVEHVQLL 9 Unmodified _FPVEHVQLL_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3075561523438 2 541.305667 1080.59678 0.89317 0.00048348 1.2907 0.00069867 2.1839 0.0011821 541.3066632909033 65.922 0.51222 65.932 65.613 66.125 0.0095596 54 25 3 0 0 0 0.05483 1 36111 36111 43.772 20.624 1 7725700 14016 2601 9475 9673 16839 16839 0.059706198569983826 FPVEHVQLL 9 Unmodified _FPVEHVQLL_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3076171875 2 541.305667 1080.59678 0.57924 0.00031355 0.37977 0.00020557 0.95901 0.00051912 541.3057331722871 75.819 2.633 69.643 68.64 71.273 -6.1757 211 144 2 0 0 0 0.0086722 10 49250 49124;49250;49372;49495;49796;49909;50032;50155;50281;50432 88.954 48.997 1 27362000 14017 2601 9475 9673 16840;16841;16842;16843;16844;16845;16846;16847;16848;16849 16841 0.059706198569983826 FPVEHVQLL 9 Unmodified _FPVEHVQLL_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 541.305667 1080.59678 0.29489 0.00015963 1.3255 0.0007175 1.6204 0.00087713 541.30672053723 66.061 0.29826 66.061 65.918 66.216 0 0.085862 0.00019127 NaN 45.7 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2431700 14018 2601 9475 9673 0.059706198569983826 FPVEIKSFY 9 Unmodified _FPVEIKSFY_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.3008422851562 2 565.30005 1128.58555 0.055984 3.1648E-05 1.2038 0.00068051 1.2598 0.00071216 565.300620046908 69.671 0.52295 69.192 68.925 69.448 -0.47903 72 22 4 0 0 0 0.01958 2 38113 38007;38113 63.961 34.879 1 7768700 14019 4607 9476 9674 16850;16851 16851 0.026397977628676017 FPVEIKSFY 9 Unmodified _FPVEIKSFY_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3008422851562 2 565.30005 1128.58555 0.84708 0.00047886 0.40643 0.00022975 1.2535 0.00070861 565.3001001779228 69.069 0.66466 69.1 68.668 69.333 0.030914 134 31 6 0 0 0 0.012228 3 37865 37865;37968;38073 74.2 45.118 1 131510000 14020 4607 9476 9674 16852;16853;16854 16852 0.026397977628676017 FPVEIKSFY 9 Unmodified _FPVEIKSFY_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3006591796875 2 565.30005 1128.58555 1.1687 0.00066066 -0.57402 -0.00032449 0.59467 0.00033617 565.2998429804228 81.663 1.5897 75.487 74.516 76.106 -6.1757 266 89 4 0 0 0 0.0081887 7 53568 53182;53310;53441;53568;53692;53813;53948 93.166 57.039 1 202670000 14021 4607 9476 9674 16855;16856;16857;16858;16859;16860;16861 16858 0.026397977628676017 FPVEIKSFYM 10 Oxidation (M) _FPVEIKSFYM(Oxidation (M))_ FPVEIKSFYM(1) FPVEIKSFYM(91) 0 0 1 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.8182983398438 2 638.81775 1275.62095 0.6595 0.0004213 -0.12615 -8.0589E-05 0.53334 0.00034071 638.8176138263598 66.978 0.5459 66.996 66.772 67.318 0.018028 83 26 5 0 0 0 0.0081376 2 36692 36692;36794 91.085 64.817 1 36897000 14022 4607 9477 9675 16862;16863 16862 838 -0.005839077716473184 FPVEIKSFYM 10 Oxidation (M) _FPVEIKSFYM(Oxidation (M))_ FPVEIKSFYM(1) FPVEIKSFYM(120) 0 0 1 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8178100585938 2 638.81775 1275.62095 0.21398 0.00013669 0.12068 7.7091E-05 0.33466 0.00021379 638.817632935947 77.265 0.82512 71.089 70.62 71.445 -6.1757 76 46 2 0 0 0 2.4958E-05 4 50528 50293;50407;50528;50647 124.95 93.685 1 21057000 14023 4607 9477 9675 16864;16865;16866;16867 16866 838 -0.005839077716473184 FPVEIKSFYM 10 Unmodified _FPVEIKSFYM_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1;ENST00000589314.1_1_18:55270019-55270151:-|nuORF ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8214721679688 2 630.820292 1259.62603 0.74225 0.00046823 -0.10786 -6.8038E-05 0.6344 0.00040019 630.8204913143289 93.797 0.73324 87.621 87.26 87.993 -6.1757 127 43 4 0 0 0 0.0052757 3 61982 61982;62114;62251 97.741 73.72 1 51847000 14024 4607 9477 9676 16868;16869;16870 16868 0.006603960909842499 FPVEILPFLY 10 Unmodified _FPVEILPFLY_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3460693359375 2 619.347 1236.67945 0.83568 0.00051758 0.4851 0.00030044 1.3208 0.00081802 619.3472463347432 102.38 0.10199 96.203 96.148 96.249 -6.1757 13 8 2 0 0 0 0.063761 1 68714 68714 54.774 34.32 1 8165800 14025 5145 9478 9677 16871 16871 0.07057516865143043 FPVEKIINL 9 Unmodified _FPVEKIINL_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.8245239257812 2 536.823692 1071.63283 0.59893 0.00032152 -0.027047 -1.4519E-05 0.57188 0.000307 536.8236134146356 73.454 0.28313 72.978 72.758 73.042 -0.47588 23 12 2 0 0 0 0.020676 1 40150 40150 76.825 40.698 1 5375500 14026 3188 9479 9678 16872 16872 0.09988077033835907 FPVEKIINL 9 Unmodified _FPVEKIINL_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8240966796875 2 536.823692 1071.63283 0.18699 0.00010038 -0.66472 -0.00035684 -0.47773 -0.00025645 536.8232470479909 73.198 1.0128 73.24 72.74 73.753 0.041725 145 47 5 0 0 0 0.01861 2 40094 40094;40202 79.596 43.469 1 622180000 14027 3188 9479 9678 16873;16874 16873 0.09988077033835907 FPVEKIINL 9 Unmodified _FPVEKIINL_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8242797851562 2 536.823692 1071.63283 0.93184 0.00050024 0.056179 3.0158E-05 0.98802 0.00053039 536.823459751246 89.979 0.76496 83.803 83.345 84.11 -6.1757 113 42 3 0 0 0 0.020676 2 59471 59347;59471 76.825 42.345 1 75548000 14028 3188 9479 9678 16875;16876 16876 0.09988077033835907 FPVEKQLDL 9 Unmodified _FPVEKQLDL_ 0 0 0 ENSG00000120217|ENST00000381577|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;nc|ENSG00000120217|Q9NZQ7-3|CD274 ENSG00000120217|ENST00000381577|CD274 ENSG00000120217|ENST00000381577|CD274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8031005859375 2 544.802957 1087.59136 -0.58028 -0.00031614 0.83794 0.00045651 0.25766 0.00014037 544.803353578818 55.558 0.54958 55.558 55.241 55.791 0 94 38 4 0 0 0 0.015688 3 30755 30755;30873;30985 67.838 31.711 1 24249000 14029 3500 9480 9679 16877;16878;16879 16877 0.05106896274514838 FPVEKQLDL 9 Unmodified _FPVEKQLDL_ 0 0 0 ENSG00000120217|ENST00000381577|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;nc|ENSG00000120217|Q9NZQ7-3|CD274 ENSG00000120217|ENST00000381577|CD274 ENSG00000120217|ENST00000381577|CD274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.802978515625 2 544.802957 1087.59136 -0.65497 -0.00035683 0.62296 0.00033939 -0.03201 -1.7439E-05 544.8032868199157 55.995 0.43498 55.517 55.34 55.775 -0.47798 53 21 3 0 0 0 0.0093064 2 30446 30340;30446 83.429 34.936 1 12328000 14030 3500 9480 9679 16880;16881 16881 0.05106896274514838 FPVEKQLDL 9 Unmodified _FPVEKQLDL_ 0 0 0 ENSG00000120217|ENST00000381577|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;nc|ENSG00000120217|Q9NZQ7-3|CD274 ENSG00000120217|ENST00000381577|CD274 ENSG00000120217|ENST00000381577|CD274 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8031005859375 2 544.802957 1087.59136 0.65035 0.00035431 0.64103 0.00034924 1.2914 0.00070355 544.8033860033171 61.89 0.68449 55.714 55.404 56.088 -6.1757 60 37 2 0 0 0 0.0081 2 40003 39872;40003 93.938 40.534 1 123070000 14031 3500 9480 9679 16882;16883 16883 0.05106896274514838 FPVELNTVY 9 Unmodified _FPVELNTVY_ 0 0 0 ENSG00000056736|ENST00000288167|IL17RB;nc|ENSG00000056736|Q9NRM6-2|IL17RB;ENST00000475124.1_1_3:53880615-53891834:+|nuORF ENSG00000056736|ENST00000288167|IL17RB ENSG00000056736|ENST00000288167|IL17RB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2821044921875 2 541.281857 1080.54916 0.54101 0.00029284 0.96293 0.00052122 1.5039 0.00081406 541.2823266898874 74.406 0.76537 73.93 73.667 74.432 -0.47588 52 31 2 0 0 0 0.44883 1 40676 40676 14.838 5.4908 1 1298800 14032 787 9481 9680 16884 16884 0.012109208661513549 FPVENIRNF 9 Unmodified _FPVENIRNF_ 0 0 0 ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2999267578125 2 568.298373 1134.58219 0.31633 0.00017977 0.26987 0.00015337 0.5862 0.00033314 568.2984905390596 57.004 0.42892 56.518 56.265 56.694 -0.48554 27 19 2 0 0 0 0.094149 1 30944 30944 34.402 17.289 1 4222800 14033 6147 9482 9681 16885 16885 0.020285477088464177 FPVENIRNF 9 Unmodified _FPVENIRNF_ 0 0 0 ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.298373 1134.58219 0.49988 0.00028408 -0.60218 -0.00034222 -0.1023 -5.8137E-05 568.2977431132703 56.67 0.24309 56.601 56.517 56.76 -0.068741 0.041302 -0.00083186 NaN 34.402 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6986000 14034 6147 9482 9681 0.020285477088464177 FPVESEAVM 9 Unmodified _FPVESEAVM_ 0 0 0 ENSG00000213523|ENST00000336283|SRA1;ENST00000523259.5_1_5:139931458-139936810:-|nuORF ENSG00000213523|ENST00000336283|SRA1 ENSG00000213523|ENST00000336283|SRA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.256591796875 2 504.738968 1007.46338 1.4382 0.00072594 -0.24238 -0.00012234 1.1959 0.0006036 504.738619813391 64.443 0.46648 58.267 57.88 58.347 -6.1757 36 24 2 0 0 0 0.13712 1 41622 41622 16.942 7.5949 1 17685000 14035 10441 9483 9682 16886 16886 -0.040049873110206136 FPVESRWQGVY 11 Unmodified _FPVESRWQGVY_ 0 0 0 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46718337-46718925:-|nuORF;ENST00000434140.5_2_3:46717393-46723043:-|nuORF ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.5633544921875 3 456.562938 1366.66699 0.12187 5.5641E-05 0.015168 6.9252E-06 0.13704 6.2567E-05 456.56289306644646 55.618 0.34814 55.55 55.298 55.646 -0.068741 33 17 2 0 0 0 0.57006 1 30159 30159 12.856 1.0576 1 7507300 14036 8725 9484 9683 16887 16887 -0.0016812654521345394 FPVETNCGHLF 11 Carbamidomethyl (C) _FPVETNC(Carbamidomethyl (C))GHLF_ FPVETNC(1)GHLF FPVETNC(67)GHLF 0 1 0 nc|ENSG00000120925|Q96K19-5|RNF170;nc|ENSG00000120925|Q96K19-6|RNF170;nc|ENSG00000120925|Q96K19-3|RNF170;nc|ENSG00000120925|Q96K19-2|RNF170;ENSG00000120925|ENST00000527424|RNF170;ENST00000528318.5_1_8:42716773-42751856:-|nuORF nc|ENSG00000120925|Q96K19-5|RNF170 nc|ENSG00000120925|Q96K19-5|RNF170 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.3070068359375 2 660.805705 1319.59686 0.16642 0.00010997 -0.60492 -0.00039974 -0.4385 -0.00028977 660.8052769162946 60.097 0.45437 59.606 59.352 59.806 -0.49079 36 22 2 0 0 0 0.010729 1 32789 32789 67.081 34.775 1 3718700 14037 3554 9485 9684 16888 16888 356 -0.050157482053464264 FPVEVNSQK 9 Unmodified _FPVEVNSQK_ 0 0 0 REV__ENSG00000136381|ENST00000258886|IREB2 REV__ENSG00000136381|ENST00000258886|IREB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.7378540039062 2 524.277106 1046.53966 1.0655 0.00055862 -0.14131 -7.4085E-05 0.92419 0.00048453 524.2766888985847 51.064 0.50241 45.415 45.154 45.656 -5.649 78 30 3 0 0 0 0.18428 1 31958 31958 19.362 1.2156 1 138880000 + 14038 20159 9486 9685 16889 16889 0.01825152580613576 FPVEVNTVL 9 Unmodified _FPVEVNTVL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2843322753906 2 509.2844 1016.55425 0.34818 0.00017732 -0.91847 -0.00046776 -0.57029 -0.00029044 509.28379755906747 77.471 0.72794 77.471 77.105 77.833 0 123 46 3 0 0 0 0.026094 3 43034 42940;43034;43140 57.471 28.985 1 7193500 14039 1832 9487 9686 16890;16891;16892 16891 0.04663224728756177 FPVEVNTVL 9 Unmodified _FPVEVNTVL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2843627929688 2 509.2844 1016.55425 -1.0596 -0.00053961 0.4791 0.000244 -0.58045 -0.00029562 509.28453302819025 77.969 0.84788 77.487 77.066 77.914 -0.4826 137 51 3 0 0 0 0.026094 4 42601 42601;42707;42808;42911 57.471 28.985 1 36582000 14040 1832 9487 9686 16893;16894;16895;16896 16893 0.04663224728756177 FPVEVNTVL 9 Unmodified _FPVEVNTVL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2843017578125 2 509.2844 1016.55425 0.3652 0.00018599 0.012099 6.162E-06 0.3773 0.00019215 509.28412892852083 77.407 0.54871 77.457 77.149 77.698 0.05011 44 22 3 0 0 0 0.016184 2 42713 42713;42826 67.344 38.857 1 2536200 14041 1832 9487 9686 16897;16898 16897 0.04663224728756177 FPVEVNTVL 9 Unmodified _FPVEVNTVL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2835693359375 2 509.2844 1016.55425 0.29595 0.00015072 0.14131 7.1968E-05 0.43727 0.00022269 509.2843303450368 85.618 0.86192 79.443 79.062 79.924 -6.1757 141 50 4 0 0 0 0.026094 4 56200 56200;56325;56462;56592 57.471 34.323 1 184800000 14042 1832 9487 9686 16899;16900;16901;16902 16899 0.04663224728756177 FPVFATVIL 9 Unmodified _FPVFATVIL_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8024291992188 2 503.802229 1005.5899 0.6889 0.00034707 0.34959 0.00017612 1.0385 0.00052319 503.8023880931398 101.77 0.12651 95.59 95.503 95.63 -6.1757 17 9 3 0 0 0 0.023761 1 68305 68305 59.795 3.2539 1 38057000 14043 13944 9488 9687 16903 16903 0.08733306976421318 FPVFFKLFTS 10 Unmodified _FPVFFKLFTS_ 0 0 0 REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1232.967407226562 1 1232.67141 1231.66413 0.59251 0.00073037 -4.3933 -0.0054155 -3.8008 -0.0046852 1232.6641527709785 43.861 0.24614 43.846 43.737 43.983 -0.015667 15 12 2 0 0 0 0.23862 1 23476 23476 3.9444 1.6417 1 42398000 + 14044 26263 9489 9688 16904 16904 0.05756650067951341 FPVFFKLFTS 10 Unmodified _FPVFFKLFTS_ 0 0 0 REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF REV__ENST00000378330.6_1_16:89334495-89334834:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1232.67141 1231.66413 0.52913 0.00065224 -5.3699 -0.0066193 -4.8407 -0.005967 1232.666666074607 49.133 0.066898 43.737 43.717 43.784 -5.3961 -0.054253 -0.00077111 NaN 3.9444 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 32354000 + 14045 26263 9489 9688 0.05756650067951341 FPVFGKAEI 9 Unmodified _FPVFGKAEI_ 0 0 0 ENST00000452242.5_1_2:172544016-172546679:+|nuORF ENST00000452242.5_1_2:172544016-172546679:+|nuORF ENST00000452242.5_1_2:172544016-172546679:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2812805175781 2 504.28166 1006.54877 0.51072 0.00025755 -1.8482 -0.00093199 -1.3374 -0.00067445 504.2805440722587 99.654 0.17521 93.479 93.365 93.541 -6.1757 16 10 2 0 0 0 0.06294 1 66419 66419 41.84 1.8899 1 20600000 14046 13541 9490 9689 16905 16905 0.04575545936961589 FPVFKAVSF 9 Unmodified _FPVFKAVSF_ 0 0 0 ENSG00000160213|ENST00000291568|CSTB ENSG00000160213|ENST00000291568|CSTB ENSG00000160213|ENST00000291568|CSTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2930297851562 2 521.292028 1040.5695 0.12571 6.5534E-05 0.91306 0.00047597 1.0388 0.0005415 521.2927414349276 75.803 0.1994 75.851 75.727 75.927 0.047943 15 8 2 0 0 0 0.032796 1 41823 41823 53.833 29.812 1 4032000 14047 6703 9491 9690 16906 16906 0.05084136316622789 FPVFKAVSF 9 Unmodified _FPVFKAVSF_ 0 0 0 ENSG00000160213|ENST00000291568|CSTB ENSG00000160213|ENST00000291568|CSTB ENSG00000160213|ENST00000291568|CSTB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7254028320312 2 521.292028 1040.5695 0.82917 0.00043224 0.65294 0.00034037 1.4821 0.00077261 521.2926993584449 93.626 0.41753 87.451 87.285 87.703 -6.1757 35 24 2 0 0 0 0.062282 1 62072 62072 34.402 6.2285 1 11339000 14048 6703 9491 9690 16907 16907 0.05084136316622789 FPVFSDRVVY 10 Unmodified _FPVFSDRVVY_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.822265625 2 614.821681 1227.62881 0.6042 0.00037147 0.029002 1.7831E-05 0.6332 0.0003893 614.8218752246119 68.375 0.37115 67.895 67.705 68.076 -0.48071 23 16 2 0 0 0 0.23548 1 37396 37396 31.268 17.362 1 1894300 14049 7527 9492 9691 16908 16908 0.024099875401361714 FPVFSDRVVY 10 Unmodified _FPVFSDRVVY_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8223266601562 2 614.821681 1227.62881 0.60121 0.00036964 1.0364 0.00063718 1.6376 0.0010068 614.8221171887807 67.844 0.45324 67.862 67.628 68.081 0.018036 66 21 4 0 0 0 0.04428 2 37315 37212;37315 61.09 40.675 1 22347000 14050 7527 9492 9691 16909;16910 16910 0.024099875401361714 FPVFSDRVVY 10 Unmodified _FPVFSDRVVY_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8220825195312 2 614.821681 1227.62881 0.51164 0.00031457 -0.24306 -0.00014944 0.26857 0.00016512 614.8219497376566 78.588 1.3788 72.412 72.025 73.404 -6.1757 150 81 2 0 0 0 0.017375 6 51608 51346;51479;51608;51737;51890;52087 78.06 51.792 1 22140000 14051 7527 9492 9691 16911;16912;16913;16914;16915;16916 16913 0.024099875401361714 FPVGDVNNF 9 Unmodified _FPVGDVNNF_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7431030273438 2 504.742899 1007.47125 0.3981 0.00020094 0.54768 0.00027644 0.94578 0.00047737 504.74269131949757 62.312 1.2048 62.312 61.641 62.846 0 157 62 4 0 0 0 0.031062 7 34798 34481;34591;34698;34798;34887;34901;35003 54.774 27.89 1 19832000 14052 1216 9493 9692 16917;16918;16919;16920;16921;16922;16923 16920 -0.032190919992331146 FPVGDVNNF 9 Unmodified _FPVGDVNNF_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7435302734375 2 504.742899 1007.47125 0.065275 3.2947E-05 0.11125 5.6151E-05 0.17652 8.9098E-05 504.74302295371655 62.893 1.2024 62.407 61.789 62.992 -0.48617 154 57 3 0 0 0 0.031062 5 34506 34071;34179;34300;34399;34506 54.774 27.89 1 25906000 14053 1216 9493 9692 16924;16925;16926;16927;16928 16928 -0.032190919992331146 FPVGDVNNF 9 Unmodified _FPVGDVNNF_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7430419921875 2 504.742899 1007.47125 0.80769 0.00040768 -0.0073232 -3.6963E-06 0.80037 0.00040398 504.7428345637351 70.047 1.1181 63.871 63.36 64.478 -6.1757 159 62 3 0 0 0 0.012148 5 45487 45487;45605;45721;45854;45978 74.423 32.328 1 151670000 14054 1216 9493 9692 16929;16930;16931;16932;16933 16929 -0.032190919992331146 FPVGFSVTF 9 Unmodified _FPVGFSVTF_ 0 0 0 ENST00000382141.4_1_13:24553874-24557904:+|nuORF ENST00000382141.4_1_13:24553874-24557904:+|nuORF ENST00000382141.4_1_13:24553874-24557904:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2146911621094 2 500.760561 999.506569 0.45257 0.00022663 -1.46 -0.00073113 -1.0075 -0.0005045 500.7582492635926 74.012 0.24481 73.536 73.469 73.714 -0.47588 12 10 2 0 0 0 0.18118 1 40515 40515 18.135 2.3668 1 306520 14055 12625 9494 9693 16934 16934 0.006795705285753684 FPVGGPGTSL 10 Unmodified _FPVGGPGTSL_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2478942871094 2 466.247818 930.481082 0.22545 0.00010512 0.66456 0.00030985 0.89001 0.00041497 466.2480885533866 59.177 0.86114 58.686 58.31 59.171 -0.49079 88 40 3 0 0 0 0.069105 4 32247 32038;32144;32247;32350 53.576 21.459 1 4162400 14056 2727 9495 9694 16935;16936;16937;16938 16937 0.013060960061579863 FPVGGPGTSL 10 Unmodified _FPVGGPGTSL_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 931.489501953125 1 931.488359 930.481082 0.24601 0.00022915 0.52055 0.00048489 0.76656 0.00071404 931.4889183038222 59.112 0.55424 58.622 58.474 59.028 -0.49079 32 25 2 0 0 0 0.063761 2 32222 32125;32222 54.774 30.1 1 881130 14057 2727 9495 9694 16939;16940 16940 0.013060960061579863 FPVGGRDRIY 10 Unmodified _FPVGGRDRIY_ 0 0 0 REV__ENST00000408887.3_1_12:62996462-62996639:-|nuORF REV__ENST00000408887.3_1_12:62996462-62996639:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 590.3192138671875 2 590.317097 1178.61964 NaN NaN NaN NaN NaN NaN NaN 44.582 1 39.73 39.23 40.23 -4.852 0 0 0 0.76313 1 27237 27237 13.906 0 1 + 14058 26672 9496 9695 16941 16941 0.0374763897448247 FPVGLTSPP 9 Unmodified _FPVGLTSPP_ 0 0 0 REV__nc|ENSG00000120094|P14653-2|HOXB1 REV__nc|ENSG00000120094|P14653-2|HOXB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7539978027344 2 457.752736 913.490919 0.25333 0.00011596 1.6427 0.00075193 1.896 0.0008679 457.75351679882897 35.021 0.55411 35.048 34.733 35.287 0.027401 39 25 2 0 0 0 0.39863 1 18409 18409 12.532 0 1 1492400 + 14059 19228 9497 9696 16942 16942 0.030712840115256768 FPVGPGTGF 9 Unmodified _FPVGPGTGF_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1 ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.7239990234375 2 439.723978 877.433404 0.055425 2.4372E-05 0.30573 0.00013444 0.36115 0.00015881 439.72393599256344 65.689 0.46205 65.204 64.898 65.36 -0.48428 41 20 3 0 0 0 0.16776 2 35771 35771;35886 26.341 12.833 1 1991000 14060 4891 9498 9697 16943;16944 16943 -0.010215581940315133 FPVGPGTGF 9 Unmodified _FPVGPGTGF_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1 ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 878.442138671875 1 878.44068 877.433404 -0.54392 -0.0004778 0.86076 0.00075613 0.31685 0.00027833 878.441530399018 65.749 0.35976 65.265 65 65.36 -0.48428 25 15 2 0 0 0 0.0086179 2 35901 35796;35901 89.427 53.383 1 1196300 14061 4891 9498 9697 16945;16946 16946 -0.010215581940315133 FPVGPGTGF 9 Unmodified _FPVGPGTGF_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1 ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MSMS AL20221201_MKP_PDAC_01 4 439.7241821289062 2 439.723978 877.433404 NaN NaN NaN NaN NaN NaN NaN 71.781 1 65.605 65.105 66.105 -6.1757 0 0 0 0.045101 1 46937 46937 59.795 16.827 1 14062 4891 9498 9697 16947 16947 -0.010215581940315133 FPVGRIHRH 9 Unmodified _FPVGRIHRH_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2 ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5497741699219 3 373.549186 1117.62573 1.0748 0.0004015 0.48583 0.00018148 1.5607 0.00058298 373.5493995173161 17.788 0.21258 15.202 15.109 15.322 -2.5866 53 22 3 0 0 0 0.42049 1 9326 9326 11.495 2.1116 1 10076000 14063 14604 9499 9698 16948 16948 0.07162201996652584 FPVGRVHRL 9 Unmodified _FPVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.884521484375 3 360.885687 1079.63523 0.15389 5.5537E-05 0.077034 2.78E-05 0.23092 8.3337E-05 360.88571865865543 26.57 0.32849 26.597 26.402 26.731 0.026951 51 13 5 0 0 0 0.010877 2 13723 13723;13828 60.074 20.124 1 287440000 14064 9238;9236 9500 9699 16949;16950 16949 0.0985997028217298 FPVGRVHRL 9 Unmodified _FPVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.824951171875 2 540.824892 1079.63523 0.23413 0.00012662 0.22974 0.00012425 0.46387 0.00025087 540.8250388095728 26.554 0.16188 26.581 26.495 26.657 0.026953 10 6 2 0 0 0 0.30562 1 13779 13779 16.942 4.4107 1 5847300 14065 9238;9236 9500 9699 16951 16951 0.0985997028217298 FPVGRVHRL 9 Unmodified _FPVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2188415527344 3 360.885687 1079.63523 1.3754 0.00049635 -0.025891 -9.3438E-06 1.3495 0.00048701 360.8856726887959 30.141 0.50409 26.644 26.41 26.915 -3.497 91 24 5 0 0 0 0.016184 3 16906 16906;17021;17137 51.63 25.362 1 560970000 14066 9238;9236 9500 9699 16952;16953;16954 16952 0.0985997028217298 FPVGRVHRL 9 Unmodified _FPVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3264770507812 2 540.824892 1079.63523 0.56846 0.00030744 0.12639 6.8355E-05 0.69485 0.00037579 540.8251019990379 30.137 0.32577 26.64 26.508 26.833 -3.497 27 15 2 0 0 0 0.0067112 2 16977 16977;17088 112.59 55.122 1 38301000 14067 9238;9236 9500 9699 16955;16956 16955 0.0985997028217298 FPVGRVHRL 9 Unmodified _FPVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MSMS AL20221201_MKP_PDAC_01 4 360.8868103027344 3 360.885687 1079.63523 NaN NaN NaN NaN NaN NaN NaN 62.69 1 56.514 56.014 57.014 -6.1757 0 0 0 0.26667 1 40466 40466 19.362 6.506 1 14068 9238;9236 9500 9699 16957 16957 0.0985997028217298 FPVGSHVQY 9 Unmodified _FPVGSHVQY_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2586059570312 2 517.258717 1032.50288 -0.030802 -1.5933E-05 -0.21193 -0.00010962 -0.24273 -0.00012555 517.2586914006845 39.813 0.60685 39.516 39.175 39.782 -0.29716 51 28 2 0 0 0 0.024882 2 21036 20926;21036 58.679 36.932 1 3554600 14069 8469 9501 9700 16958;16959 16959 -0.012070992452891005 FPVGSHVQY 9 Unmodified _FPVGSHVQY_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2584228515625 2 517.258717 1032.50288 0.58084 0.00030044 0.1192 6.1658E-05 0.70004 0.0003621 517.2585698935133 44.775 0.61898 39.923 39.648 40.267 -4.852 96 46 3 0 0 0 0.07087 1 27359 27359 39.95 20.511 1 17796000 14070 8469 9501 9700 16960 16960 -0.012070992452891005 FPVGSHVQY 9 Unmodified _FPVGSHVQY_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MSMS AL20221201_MKP_PDAC_01 4 517.2589721679688 2 517.258717 1032.50288 NaN NaN NaN NaN NaN NaN NaN 44.572 1 39.72 39.22 40.22 -4.852 0 0 0 0.047623 1 27229 27229 58.679 36.932 1 14071 8469 9501 9700 16961 16961 -0.012070992452891005 FPVGTVVEY 9 Unmodified _FPVGTVVEY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7637023925781 2 505.7633 1009.51205 0.38234 0.00019337 0.023512 1.1891E-05 0.40585 0.00020526 505.7633070374187 64.728 1.3137 64.728 64.214 65.528 0 172 59 4 0 0 0 0.0081063 4 36287 35965;36078;36181;36287 93.883 43.028 1 29121000 14072 53 9502 9701 16962;16963;16964;16965 16965 0.0076724932038132465 FPVGTVVEY 9 Unmodified _FPVGTVVEY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7636413574219 2 505.7633 1009.51205 -0.18761 -9.4889E-05 0.60119 0.00030406 0.41358 0.00020917 505.7635246475699 65.302 1.1316 64.817 64.254 65.385 -0.48428 133 51 4 0 0 0 0.012158 6 35510 35409;35510;35606;35714;35823;35929 74.396 44.171 1 45715000 14073 53 9502 9701 16966;16967;16968;16969;16970;16971 16967 0.0076724932038132465 FPVGTVVEY 9 Unmodified _FPVGTVVEY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.763671875 2 505.7633 1009.51205 0.7557 0.0003822 0.35603 0.00018007 1.1117 0.00056227 505.76359165180804 64.852 0.73914 64.852 64.481 65.22 7.6294E-06 57 36 2 0 0 0 0.019979 2 35470 35470;35579 63.563 32.926 1 4503900 14074 53 9502 9701 16972;16973 16972 0.0076724932038132465 FPVGTVVEY 9 Unmodified _FPVGTVVEY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;CD55-C4BPA|1|fusion nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7637329101562 2 505.7633 1009.51205 1.0137 0.00051271 0.042716 2.1604E-05 1.0564 0.00053431 505.76338230582274 71.956 1.1429 65.78 65.399 66.542 -6.1757 161 60 4 0 0 0 0.0081063 4 47130 46839;46984;47130;47252 93.883 43.028 1 569400000 14075 53 9502 9701 16974;16975;16976;16977 16976 0.0076724932038132465 FPVGVFVVA 9 Unmodified _FPVGVFVVA_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 934.5520629882812 1 934.539666 933.53239 1.3567 0.0012679 -0.34799 -0.00032521 1.0087 0.00094266 934.539099067644 100.16 0.16033 93.98 93.884 94.044 -6.1757 16 9 2 0 0 0 0.028712 2 66871 66871;66900 56.048 21.861 1 15347000 14076 5778 9503 9702 16978;16979 16978 0.06296464770844068 FPVGVFVVA 9 Unmodified _FPVGVFVVA_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.773681640625 2 467.773471 933.53239 1.2575 0.00058823 0.10881 5.0899E-05 1.3663 0.00063913 467.7730939735254 100.16 0.16033 93.988 93.884 94.044 -6.1757 12 9 2 0 0 0 0.1492 1 66937 66937 28.173 1.832 1 14326000 14077 5778 9503 9702 16980 16980 0.06296464770844068 FPVHPGTPE 9 Unmodified _FPVHPGTPE_ 0 0 0 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 CON__Q3MHN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7455444335938 2 490.745442 979.476331 -0.073181 -3.5913E-05 1.7769 0.00087202 1.7037 0.00083611 490.7461518684891 32.671 0.23771 32.542 32.437 32.675 -0.12915 12 9 2 0 0 0 0.10734 1 17041 17041 32.305 15.363 1 1329000 + 14078 142 9504 9703 16981 16981 -0.014227881366196016 FPVHPGTPE 9 Unmodified _FPVHPGTPE_ 0 0 0 CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229 CON__Q3MHN5 CON__Q3MHN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7458801269531 2 490.745442 979.476331 1.1849 0.0005815 -0.71706 -0.00035189 0.46787 0.00022961 490.7448358314295 37.402 0.28802 33.119 32.908 33.196 -4.2835 31 16 3 0 0 0 0.024882 1 21919 21919 58.679 20.705 1 10251000 + 14079 142 9504 9703 16982 16982 -0.014227881366196016 FPVIETSTL 9 Unmodified _FPVIETSTL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1006.544799804688 1 1006.54554 1005.53826 0.50867 0.000512 -0.59246 -0.00059634 -0.083791 -8.434E-05 1006.5448986605332 72.511 0.37479 72.035 71.834 72.209 -0.47609 26 17 2 0 0 0 0.010877 1 39640 39640 77.984 33.577 1 1390000 14080 2532 9505 9704 16983 16983 0.03571518491855841 FPVIETSTL 9 Unmodified _FPVIETSTL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7771911621094 2 503.776408 1005.53826 0.17 8.5642E-05 0.27455 0.00013831 0.44455 0.00022395 503.77632077175457 72.555 0.2909 72.079 71.854 72.145 -0.47609 23 13 2 0 0 0 0.28047 1 39644 39644 18.135 7.3111 1 1253600 14081 2532 9505 9704 16984 16984 0.03571518491855841 FPVIETSTL 9 Unmodified _FPVIETSTL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7745056152344 2 503.776408 1005.53826 1.072 0.00054004 -1.7097 -0.0008613 -0.6377 -0.00032126 503.77499865576374 79.93 0.72289 73.754 73.535 74.258 -6.1757 78 43 3 0 0 0 0.045537 2 52713 52584;52713 46.921 14.804 1 44220000 14082 2532 9505 9704 16985;16986 16986 0.03571518491855841 FPVIETSTL 9 Unmodified _FPVIETSTL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1006.54554 1005.53826 -0.24965 -0.00025128 0.23782 0.00023938 -0.011825 -1.1902E-05 1006.5459451468893 72.018 0.21129 72.018 71.904 72.115 0 -0.0083723 0.00046609 NaN 77.984 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 736760 14083 2532 9505 9704 0.03571518491855841 FPVIETSTL 9 Unmodified _FPVIETSTL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 503.776408 1005.53826 0.37668 0.00018976 0.40637 0.00020472 0.78305 0.00039448 503.77651300731657 71.996 0.29835 71.996 71.861 72.16 0 -0.04137 5.8876E-05 NaN 18.135 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 671280 14084 2532 9505 9704 0.03571518491855841 FPVIYDVKY 9 Unmodified _FPVIYDVKY_ 0 0 0 ENSG00000198791|ENST00000361272|CNOT7;nc|ENSG00000198791|Q9UIV1-2|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.30810546875 2 572.307875 1142.6012 0.40659 0.00023269 0.043039 2.4631E-05 0.44963 0.00025733 572.3078129271306 66.759 0.41231 66.276 66.068 66.481 -0.48323 71 19 5 0 0 0 0.011671 2 36504 36400;36504 75.761 55.307 1 70097000 14085 10152 9506 9705 16987;16988 16988 0.0356008427991128 FPVIYDVKY 9 Unmodified _FPVIYDVKY_ 0 0 0 ENSG00000198791|ENST00000361272|CNOT7;nc|ENSG00000198791|Q9UIV1-2|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.308349609375 2 572.307875 1142.6012 0.9941 0.00056893 0.44642 0.00025549 1.4405 0.00082442 572.3079013968212 66.278 0.41579 66.288 66.064 66.48 0.0095596 74 20 5 0 0 0 0.0082353 2 36283 36283;36396 96.111 69.227 1 136440000 14086 10152 9506 9705 16989;16990 16989 0.0356008427991128 FPVIYDVKY 9 Unmodified _FPVIYDVKY_ 0 0 0 ENSG00000198791|ENST00000361272|CNOT7;nc|ENSG00000198791|Q9UIV1-2|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3084716796875 2 572.307875 1142.6012 1.036 0.00059289 -1.2271 -0.00070228 -0.19115 -0.0001094 572.3069456580477 73.966 1.8187 67.791 67.207 69.026 -6.1757 261 94 3 0 0 0 0.0059585 10 49038 48109;48200;48314;48432;48546;48666;48793;48917;49038;49106 114.65 66.303 1 129430000 14087 10152 9506 9705 16991;16992;16993;16994;16995;16996;16997;16998;16999;17000 16999 0.0356008427991128 FPVKGLKTGY 10 Unmodified _FPVKGLKTGY_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.5502624511719 3 370.54997 1108.62808 -0.30707 -0.00011379 1.2581 0.00046619 0.95104 0.00035241 370.5506328085697 36.695 0.61656 36.717 36.453 37.07 0.021542 88 28 5 0 0 0 0.40046 2 19527 19428;19527 19.144 11.667 1 75998000 14088 3756 9507 9706 17001;17002 17002 0.07811192891085739 FPVKHEPVF 9 Unmodified _FPVKHEPVF_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33;ENST00000502360.5_1_4:130017289-130023978:+|nuORF ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2025756835938 3 367.202682 1098.58622 0.068313 2.5085E-05 0.31221 0.00011465 0.38053 0.00013973 367.2027280576781 39.815 0.36398 39.517 39.371 39.735 -0.29716 31 17 2 0 0 0 0.27545 1 21006 21006 18.373 6.1324 1 2794000 14089 6117 9508 9707 17003 17003 0.040866372025675446 FPVKHEPVF 9 Unmodified _FPVKHEPVF_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33;ENST00000502360.5_1_4:130017289-130023978:+|nuORF ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2023315429688 3 367.202682 1098.58622 1.1862 0.00043557 -0.18655 -6.8501E-05 0.99964 0.00036707 367.53700870343744 44.232 0.47596 39.38 39.172 39.648 -4.852 52 33 2 0 0 0 0.37578 1 26994 26994 13.615 1.3742 1 17964000 14090 6117 9508 9707 17004 17004 0.040866372025675446 FPVKNVIDGDL 11 Unmodified _FPVKNVIDGDL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.8318481445312 2 608.832246 1215.64994 0.012428 7.5668E-06 -0.14172 -8.6282E-05 -0.12929 -7.8715E-05 609.3338231746668 61.658 0.22224 61.658 61.529 61.751 0 14 9 3 0 0 0 0.63851 1 34391 34391 9.3831 5.0539 1 875500 14091 9729 9509 9708 17005 17005 0.05073952849011221 FPVKNVIDGDL 11 Unmodified _FPVKNVIDGDL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.833251953125 2 608.832246 1215.64994 0.71157 0.00043323 0.049139 2.9917E-05 0.76071 0.00046314 608.8320136375658 62.182 0.25966 61.695 61.55 61.809 -0.48764 32 11 4 0 0 0 0.0008837 1 33849 33849 84.522 64.069 1 4986400 14092 9729 9509 9708 17006 17006 0.05073952849011221 FPVKPHNKSF 10 Unmodified _FPVKPHNKSF_ 0 0 0 nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK nc|ENSG00000234616|O75564|JRK nc|ENSG00000234616|O75564|JRK MSMS AL20221201_MKP_PDAC_01 4 400.8890380859375 3 400.888986 1199.64513 NaN NaN NaN NaN NaN NaN NaN 24.809 1 21.926 21.426 22.426 -2.8831 0 0 0 0.19521 1 13531 13531 43.477 26.911 1 14093 10635 9510 9709 17007 17007 0.05329113496895843 FPVLDANDL 9 Unmodified _FPVLDANDL_ 0 0 0 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2595520019531 2 502.258382 1002.50221 0.43357 0.00021776 1.2108 0.00060814 1.6444 0.00082591 502.25886354692875 76.592 0.36339 76.592 76.396 76.759 0 35 14 3 0 0 0 0.047196 1 42567 42567 46.021 11.919 1 1405300 14094 1530 9511 9710 17008 17008 0.0010606131498889226 FPVLDANDL 9 Unmodified _FPVLDANDL_ 0 0 0 ENSG00000089356|ENST00000604404|FXYD3;nc|ENSG00000089356|Q14802-4|FXYD3;nc|ENSG00000089356|Q14802-2|FXYD3;nc|ENSG00000089356|Q14802-3|FXYD3;nc|ENSG00000089356|Q14802-5|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 ENSG00000089356|ENST00000604404|FXYD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.258544921875 2 502.258382 1002.50221 NaN NaN NaN NaN NaN NaN NaN 77.131 1 76.649 76.149 77.149 -0.4826 0 0 0 0.20498 1 42226 42226 30.225 7.0764 1 14095 1530 9511 9710 17009 17009 0.0010606131498889226 FPVLDANVE 9 Unmodified _FPVLDANVE_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1003.506774902344 1 1003.50949 1002.50221 -0.10872 -0.0001091 2.3126 0.0023207 2.2039 0.0022116 1003.5106804640993 76.572 0.26483 76.572 76.443 76.708 0 19 10 2 0 0 0 0.14 1 42546 42546 29.082 0 1 696920 + 14096 17414 9512 9711 17010 17010 0.0010606131500026095 FPVLGGKAIEF 11 Unmodified _FPVLGGKAIEF_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.333740234375 2 589.334424 1176.6543 -0.0018347 -1.0813E-06 0.96323 0.00056767 0.9614 0.00056659 589.3355738463642 93.168 0.4018 86.992 86.712 87.114 -6.1757 49 27 2 0 0 0 0.029988 1 61667 61667 55.235 24.598 1 20344000 14097 4651 9513 9712 17011 17011 0.07303462062577637 FPVLGLVLF 9 Unmodified _FPVLGLVLF_ 0 0 0 REV__ENSG00000134760|ENST00000257192|DSG1 REV__ENSG00000134760|ENST00000257192|DSG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.8149719238281 2 502.812596 1003.61064 1.361 0.00068432 -0.54193 -0.00027249 0.81906 0.00041183 502.81242367688697 97.708 0.62935 91.533 91.279 91.908 -6.1757 109 39 4 0 0 0 0.46577 1 64893 64893 9.3474 6.4582 1 310590000 + 14098 20007 9514 9713 17012 17012 0.10897897356073827 FPVNEVFTQ 9 Unmodified _FPVNEVFTQ_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7735595703125 2 540.771657 1079.52876 NaN NaN NaN NaN NaN NaN NaN 39.746 1 39.449 38.949 39.949 -0.29716 0 0 0 0.19623 1 20980 20980 31.268 5.869 1 14099 6002 9515 9714 17013 17013 -0.007822497936558648 FPVNKDVTL 9 Unmodified _FPVNKDVTL_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7883911132812 2 516.78985 1031.56515 -0.040657 -2.1011E-05 -0.43215 -0.00022333 -0.47281 -0.00024434 516.7894995803008 48.334 0.39874 48.334 48.112 48.511 0 35 19 3 0 0 0 0.062454 1 26474 26474 41.956 13.469 1 5173000 14100 10117 9516 9715 17014 17014 0.05062627103052364 FPVNKDVTL 9 Unmodified _FPVNKDVTL_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7888793945312 2 516.78985 1031.56515 0.27993 0.00014467 -0.68765 -0.00035537 -0.40772 -0.0002107 516.7894498431489 48.594 0.70972 48.222 47.925 48.635 -0.37172 77 37 3 0 0 0 0.0089732 2 26102 25984;26102 86.332 46.375 1 10994000 14101 10117 9516 9715 17015;17016 17016 0.05062627103052364 FPVNKDVTL 9 Unmodified _FPVNKDVTL_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7908325195312 2 516.78985 1031.56515 1.0963 0.00056656 -0.20826 -0.00010762 0.88805 0.00045893 516.789787479655 54.361 0.66056 48.496 48.175 48.835 -5.8653 96 39 3 0 0 0 0.076472 2 34275 34275;34416 38.615 16.786 1 73464000 14102 10117 9516 9715 17017;17018 17017 0.05062627103052364 FPVNKDVTL 9 Unmodified _FPVNKDVTL_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.78985 1031.56515 0.48085 0.0002485 -0.14912 -7.7062E-05 0.33173 0.00017143 516.789784780669 48.294 0.37301 48.255 48.066 48.439 -0.038643 -0.071438 0.00026245 NaN 86.332 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4699000 14103 10117 9516 9715 0.05062627103052364 FPVNNYYN 8 Unmodified _FPVNNYYN_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7335205078125 2 515.735074 1029.4556 NaN NaN NaN NaN NaN NaN NaN 62.756 1 62.27 61.77 62.77 -0.48617 0 0 0 0.73801 1 34211 34211 26.341 1.6674 1 14104 5337 9517 9716 17019 17019 -0.05795378516290839 FPVPGSGLVL 10 Unmodified _FPVPGSGLVL_ 0 0 0 ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2897644042969 2 493.289485 984.564418 0.76887 0.00037927 -0.70246 -0.00034651 0.066408 3.2759E-05 493.2888457306448 90.3 0.8009 90.342 90.05 90.85 0.042183 71 28 4 0 0 0 0.017458 3 50132 50132;50236;50346 77.984 31.063 1 24108000 14105 320 9518 9717 17020;17021;17022 17020 0.07151832453996576 FPVPGSGLVL 10 Unmodified _FPVPGSGLVL_ 0 0 0 ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 985.5715942382812 1 985.571694 984.564418 0.49958 0.00049237 0.34482 0.00033984 0.8444 0.00083222 985.5718948498773 99.657 0.28695 93.481 93.324 93.611 -6.1757 56 18 4 0 0 0 0.00023047 2 66322 66322;66481 117.6 46.465 1 323420000 14106 320 9518 9717 17023;17024 17023 0.07151832453996576 FPVPGSGLVL 10 Unmodified _FPVPGSGLVL_ 0 0 0 ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 ENSG00000005893|ENST00000200639|LAMP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2901306152344 2 493.289485 984.564418 0.51448 0.00025379 0.51288 0.000253 1.0274 0.00050678 493.28958848311584 99.662 0.33232 93.487 93.306 93.638 -6.1757 65 21 5 0 0 0 0.13184 1 66498 66498 42.095 13.608 1 387140000 14107 320 9518 9717 17025 17025 0.07151832453996576 FPVPKPIDY 9 Unmodified _FPVPKPIDY_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2;nc|ENSG00000058729|Q9BVS4-2|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.294677734375 2 538.294768 1074.57498 0.15444 8.3132E-05 0.19799 0.00010658 0.35242 0.00018971 538.2945854771791 58.224 0.53293 57.734 57.45 57.983 -0.48979 85 25 5 0 0 0 0.05483 3 31666 31563;31666;31772 43.772 21.036 1 37269000 14108 807 9519 9718 17026;17027;17028 17027 0.04067815108442119 FPVPKPIDY 9 Unmodified _FPVPKPIDY_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2;nc|ENSG00000058729|Q9BVS4-2|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.294677734375 2 538.294768 1074.57498 0.80553 0.00043361 0.27607 0.00014861 1.0816 0.00058222 538.2944660336532 57.797 0.55209 57.731 57.438 57.99 -0.066036 96 27 6 0 0 0 0.036857 3 31463 31368;31463;31564 51.63 28.481 1 19422000 14109 807 9519 9718 17029;17030;17031 17030 0.04067815108442119 FPVPNQPVY 9 Unmodified _FPVPNQPVY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7775268554688 2 530.776742 1059.53893 NaN NaN NaN NaN NaN NaN NaN 60.333 1 59.842 59.342 60.342 -0.49079 0 0 0 0.3092 1 32853 32853 24.674 6.5389 1 14110 9647 9520 9719 17032 17032 0.011543579315684838 FPVPNQPVY 9 Unmodified _FPVPNQPVY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7764282226562 2 530.776742 1059.53893 NaN NaN NaN NaN NaN NaN NaN 60.515 1 60.026 59.526 60.526 -0.48932 0 0 0 0.086291 1 32955 32955 46.921 32.083 1 14111 9647 9520 9719 17033 17033 0.011543579315684838 FPVPNQPVY 9 Unmodified _FPVPNQPVY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.776611328125 2 530.776742 1059.53893 0.69733 0.00037012 0.12152 6.4501E-05 0.81885 0.00043463 530.7768264182721 67.47 0.71043 61.294 60.962 61.673 -6.1757 93 39 4 0 0 0 0.078417 1 43934 43934 38.151 21.209 1 40042000 14112 9647 9520 9719 17034 17034 0.011543579315684838 FPVPPLLY 8 Unmodified _FPVPPLLY_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2754516601562 2 473.275847 944.537141 1.4862 0.00070336 0.1541 7.2932E-05 1.6403 0.00077629 473.27522203170764 100.98 0.2691 94.8 94.67 94.939 -6.1757 25 15 2 0 0 0 0.32738 1 67633 67633 52.334 10.517 1 26972000 14113 3763 9521 9720 17035 17035 0.06265348913609614 FPVPYSRAL 9 Unmodified _FPVPYSRAL_ 0 0 0 ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2923583984375 2 525.292559 1048.57057 0.70964 0.00037277 0.13931 7.3177E-05 0.84895 0.00044595 525.2925206168059 57.349 0.1964 57.282 57.201 57.397 -0.066036 15 9 2 0 0 0 0.20428 1 31256 31256 22.736 5.6234 1 1391900 14114 6091 9522 9721 17036 17036 0.04822350685526544 FPVQGTVTF 9 Unmodified _FPVQGTVTF_ 0 0 0 ENSG00000178935|ENST00000391701|ZNF552 ENSG00000178935|ENST00000391701|ZNF552 ENSG00000178935|ENST00000391701|ZNF552 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2637634277344 2 498.263468 994.512382 0.89418 0.00044554 0.29851 0.00014874 1.1927 0.00059428 498.2634977122598 75.582 0.83088 69.407 69.063 69.894 -6.1757 76 44 2 0 0 0 0.015445 3 49448 49308;49448;49577 68.081 25.986 1 17714000 14115 8785 9523 9722 17037;17038;17039 17038 0.014906690402426648 FPVQGVHTV 9 Unmodified _FPVQGVHTV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.269287109375 2 492.269084 982.523616 0.18244 8.9809E-05 0.38559 0.00018981 0.56802 0.00027962 492.26922075151043 41.335 0.41627 41.032 40.776 41.192 -0.30304 30 19 2 0 0 0 0.0088174 1 21879 21879 103.75 46.277 1 3457300 14116 9728 9524 9723 17040 17040 0.031654911343935055 FPVQGVHTV 9 Unmodified _FPVQGVHTV_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2702331542969 2 492.269084 982.523616 0.53851 0.00026509 0.4381 0.00021566 0.97661 0.00048075 492.2693311947548 46.258 0.52024 41.303 40.936 41.457 -4.9549 60 34 2 0 0 0 0.024882 1 28547 28547 58.679 20.705 1 21515000 14117 9728 9524 9723 17041 17041 0.031654911343935055 FPVQLQLF 8 Unmodified _FPVQLQLF_ 0 0 0 REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF REV__ENST00000310074.7_1_4:7057430-7057760:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.798828125 2 496.284203 990.553853 1.2132 0.00060211 -0.048441 -2.4041E-05 1.1648 0.00057807 496.28461356785465 100.74 0.095024 94.564 94.528 94.623 -6.1757 10 6 2 0 0 0 8.7369 1 67491 67491 19.439 0 1 18475000 + 14118 25413 9525 9724 17042 17042 0.0581984979957042 FPVRDGKIKL 10 Unmodified _FPVRDGKIKL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5762939453125 3 391.576519 1171.70773 -0.35987 -0.00014092 0.32276 0.00012639 -0.037104 -1.4529E-05 391.57666598205117 36.61 0.54906 36.631 36.393 36.942 0.021545 81 25 4 0 0 0 0.34306 1 19381 19381 24.957 7.0939 1 38859000 14119 3283 9526 9725 17043 17043 0.1287425956509196 FPVRDGKIKL 10 Unmodified _FPVRDGKIKL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5774841308594 3 391.576519 1171.70773 1.3288 0.00052034 -0.31186 -0.00012212 1.017 0.00039822 391.5764450055276 41.026 0.54192 36.418 36.18 36.722 -4.6079 89 33 3 0 0 0 0.2881 2 24487 24487;24623 28.181 3.149 1 70660000 14120 3283 9526 9725 17044;17045 17044 0.1287425956509196 FPVRDGKIKL 10 Unmodified _FPVRDGKIKL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MSMS AL20221201_MKP_PDAC_01 4 586.861083984375 2 586.861141 1171.70773 NaN NaN NaN NaN NaN NaN NaN 41.127 1 36.52 36.02 37.02 -4.6079 0 0 0 0.13297 1 24653 24653 55.235 13.395 1 14121 3283 9526 9725 17046 17046 0.1287425956509196 FPVRDGVVL 9 Unmodified _FPVRDGVVL_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44799906-44801193:+|nuORF;ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2929382324219 2 501.292559 1000.57057 -0.49984 -0.00025057 1.4581 0.00073092 0.95823 0.00048036 501.29351472075047 55.957 0.62456 55.479 55.091 55.716 -0.47798 72 30 4 0 0 0 0.076472 2 30334 30232;30334 38.615 10.986 1 14162000 14122 2549;3643 9527 9726 17047;17048 17048 0.07030350685522535 FPVRLDNMSHL 11 Unmodified _FPVRLDNMSHL_ 0 0 0 REV__ENSG00000132423|ENST00000254759|COQ3 REV__ENSG00000132423|ENST00000254759|COQ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.84326171875 2 664.842622 1327.67069 -0.024431 -1.6243E-05 0.80326 0.00053404 0.77883 0.0005178 664.8427775390167 88.287 0.53355 88.287 88.073 88.606 0 54 26 3 0 0 0 0.66428 1 48915 48915 7.609 4.0125 1 636470 + 14123 19851 9528 9727 17049 17049 0.019962199570272787 FPVRVQVHF 9 Unmodified _FPVRVQVHF_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8825988769531 3 376.881943 1127.624 0.046953 1.7696E-05 -0.23499 -8.8565E-05 -0.18804 -7.0869E-05 376.88185610431543 56.463 0.51128 56.394 56.248 56.76 -0.068737 66 25 4 0 0 0 0.06187 2 30676 30676;30780 45.7 33.459 1 30661000 14124 7087 9529 9728 17050;17051 17050 0.065291481880422 FPVRVQVHF 9 Unmodified _FPVRVQVHF_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8184204101562 2 564.819276 1127.624 0.34549 0.00019514 0.012276 6.9335E-06 0.35777 0.00020207 564.8193018495804 56.456 0.11762 56.387 56.32 56.438 -0.068741 8 5 2 0 0 0 0.013323 1 30719 30719 71.134 52.999 1 4149100 14125 7087 9529 9728 17052 17052 0.065291481880422 FPVSDGSNY 9 Unmodified _FPVSDGSNY_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.217041015625 2 493.216714 984.418876 0.025805 1.2728E-05 2.8514 0.0014064 2.8772 0.0014191 493.2182172951277 40.302 0.71695 40.302 39.812 40.529 0 59 35 2 0 0 0 0.37804 1 21778 21778 13.508 3.3245 1 3128600 14126 3750 9530 9729 17053 17053 -0.07395675132852375 FPVSIPAVL 9 Unmodified _FPVSIPAVL_ 0 0 0 ENSG00000151353|ENST00000281017|TMEM18 ENSG00000151353|ENST00000281017|TMEM18 ENSG00000151353|ENST00000281017|TMEM18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.56396484375 1 942.565881 941.558604 0.55063 0.000519 -0.30599 -0.00028842 0.24464 0.00023059 942.5654585395691 100.47 0.12964 94.294 94.215 94.345 -6.1757 12 7 2 0 0 0 0.0086629 1 67168 67168 101.72 45.181 1 16856000 14127 6107 9531 9730 17054 17054 0.0854873394232527 FPVSKTLVL 9 Unmodified _FPVSKTLVL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3126220703125 2 502.312961 1002.61137 0.40324 0.00020255 0.32523 0.00016337 0.72847 0.00036592 502.3131083247007 63.196 0.61186 63.174 62.888 63.5 -0.021614 82 30 3 0 0 0 0.029718 2 34697 34476;34697 55.503 18.997 1 21824000 14128 1295 9532 9731 17055;17056 17056 0.11016692005136974 FPVSKTLVL 9 Unmodified _FPVSKTLVL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3149719238281 2 502.312961 1002.61137 0.868 0.00043601 1.1526 0.00057897 2.0206 0.001015 502.3137436197137 68.407 0.66219 62.232 61.992 62.654 -6.1757 73 38 2 0 0 0 0.023481 3 44815 44557;44684;44815 60.074 18.234 1 42669000 14129 1295 9532 9731 17057;17058;17059 17059 0.11016692005136974 FPVSLPLAY 9 Unmodified _FPVSLPLAY_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-4|ANKRD17 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7839660644531 2 503.784036 1005.55352 0.84029 0.00042333 -0.01887 -9.5062E-06 0.82142 0.00041382 503.7838744179548 99.938 0.14031 93.763 93.715 93.855 -6.1757 17 9 2 0 0 0 0.019979 1 66731 66731 63.563 6.0915 1 39610000 14130 4333;4410 9533 9732 17060 17060 0.0509643007970908 FPVSLPLAY 9 Unmodified _FPVSLPLAY_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000132466|O75179-4|ANKRD17 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.784036 1005.55352 1.9061 0.00096024 -1.2189 -0.00061408 0.68712 0.00034616 503.7834009375386 93.478 0.43875 93.501 93.381 93.819 0.022987 -0.13082 -0.00077222 NaN 63.563 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1531600 14131 4333;4410 9533 9732 0.0509643007970908 FPVSSLGVL 9 Unmodified _FPVSSLGVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.5322265625 1 918.529495 917.522219 0.25975 0.00023859 0.93535 0.00085915 1.1951 0.0010977 918.5300143345087 83.727 0.43679 83.23 83.007 83.443 -0.49751 25 17 2 0 0 0 0.39863 1 45793 45793 12.532 0 1 576480 14132 4412 9534 9733 17061 17061 0.06015857045622397 FPVSSLGVL 9 Unmodified _FPVSSLGVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 918.5327758789062 1 918.529495 917.522219 0.85253 0.00078308 1.3375 0.0012286 2.1901 0.0020116 918.5294821386674 83.107 0.54097 83.17 82.816 83.357 0.063171 25 20 2 0 0 0 0.0086179 2 46020 45902;46020 89.427 45.02 1 6741900 14133 4412 9534 9733 17062;17063 17063 0.06015857045622397 FPVSSLGVL 9 Unmodified _FPVSSLGVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.7690734863281 2 459.768386 917.522219 0.77152 0.00035472 0.19922 9.1595E-05 0.97074 0.00044632 459.7683939540337 83.051 0.46027 83.113 82.869 83.329 0.062004 33 17 2 0 0 0 0.03327 1 45930 45930 53.576 17.531 1 6023100 14134 4412 9534 9733 17064 17064 0.06015857045622397 FPVSSLGVL 9 Unmodified _FPVSSLGVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5284423828125 1 918.529495 917.522219 0.82495 0.00075774 -1.1549 -0.0010608 -0.32993 -0.00030305 918.5287411190385 91.763 0.72574 85.587 85.111 85.837 -6.1757 66 40 2 0 0 0 0.0086179 4 60740 60436;60496;60620;60740 101.72 46.948 1 12949000 14135 4412 9534 9733 17065;17066;17067;17068 17068 0.06015857045622397 FPVSSLGVL 9 Unmodified _FPVSSLGVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7692260742188 2 459.768386 917.522219 1.0934 0.0005027 0.67535 0.0003105 1.7687 0.0008132 459.7685167077796 91.656 0.92455 85.48 85.012 85.937 -6.1757 104 52 3 0 0 0 0.0094915 3 60764 60513;60637;60764 81.864 41.907 1 23309000 14136 4412 9534 9733 17069;17070;17071 17071 0.06015857045622397 FPVSYNDKF 9 Unmodified _FPVSYNDKF_ 0 0 0 ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENSG00000121579|ENST00000240922|NAA50 ENSG00000121579|ENST00000240922|NAA50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7717895507812 2 558.771657 1115.52876 0.94354 0.00052722 -0.37187 -0.00020779 0.57168 0.00031944 558.771321046125 50.669 0.64878 50.256 49.992 50.64 -0.41351 71 31 3 0 0 0 0.0099157 2 27323 27222;27323 80.676 42.702 1 5433100 14137 3589 9535 9734 17072;17073 17073 -0.024382497936812797 FPVSYNDKF 9 Unmodified _FPVSYNDKF_ 0 0 0 ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENSG00000121579|ENST00000240922|NAA50 ENSG00000121579|ENST00000240922|NAA50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7716674804688 2 558.771657 1115.52876 0.87414 0.00048845 -0.058032 -3.2427E-05 0.81611 0.00045602 558.7710611089676 56.491 0.51483 50.514 50.221 50.736 -5.9769 55 29 3 0 0 0 0.0061279 2 35999 35999;36175 114.19 64.253 1 49548000 14138 3589 9535 9734 17074;17075 17074 -0.024382497936812797 FPVSYNDKF 9 Unmodified _FPVSYNDKF_ 0 0 0 ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF;nc|ENSG00000121579|Q9GZZ1-2|NAA50 ENSG00000121579|ENST00000240922|NAA50 ENSG00000121579|ENST00000240922|NAA50 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 558.771657 1115.52876 1.6504 0.0009222 -1.2446 -0.00069547 0.40575 0.00022672 558.7715438776096 50.282 0.34696 50.234 50.066 50.413 -0.048824 -0.10091 -0.0010132 NaN 114.19 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 917750 14139 3589 9535 9734 -0.024382497936812797 FPVTENSKGY 10 Unmodified _FPVTENSKGY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2810668945312 2 571.279846 1140.54514 -0.6126 -0.00034997 0.12499 7.1403E-05 -0.48761 -0.00027856 571.2797473728782 32.821 0.84601 32.821 32.481 33.327 0 72 43 2 0 0 0 0.031932 2 17187 17187;17290 67.081 36.444 1 6795200 14140 2369 9536 9735 17076;17077 17076 -0.019511686275791362 FPVVEEQQG 9 Unmodified _FPVVEEQQG_ 0 0 0 nc|ENSG00000116922|Q9NX04-2|AIRIM;ENST00000491797.1_1_1:38155276-38156178:-|nuORF;ENSG00000116922|ENST00000486637|C1orf109 nc|ENSG00000116922|Q9NX04-2|AIRIM nc|ENSG00000116922|Q9NX04-2|AIRIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.754150390625 2 516.753464 1031.49238 0.14266 7.3723E-05 1.3662 0.00070599 1.5089 0.00077972 516.7541216900721 65.431 0.86581 64.946 64.448 65.314 -0.48428 87 39 3 0 0 0 0.1773 1 35680 35680 25.399 0 1 4734700 14141 3268 9537 9736 17078 17078 -0.022111266903721116 FPVVQHHPH 9 Unmodified _FPVVQHHPH_ 0 0 0 REV__nc|ENSG00000105290|P51693|APLP1 REV__nc|ENSG00000105290|P51693|APLP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7695922851562 2 549.2856 1096.55665 1.4847 0.00081555 -1.1555 -0.00063469 0.32927 0.00018086 549.786094426024 100.37 0.084282 100.33 100.29 100.38 -0.036301 4 2 2 0 0 0 0.209 1 55770 55770 7.2892 0 1 1996700 + 14142 18415 9538 9737 17079 17079 0.012231179770878953 FPVWFLLSAI 10 Unmodified _FPVWFLLSAI_ 0 0 0 REV__ENSG00000179934|ENST00000326306|CCR8 REV__ENSG00000179934|ENST00000326306|CCR8 MSMS AL20221201_MKP_PDAC_01 4 398.5635986328125 3 398.230349 1191.66922 NaN NaN NaN NaN NaN NaN NaN 30.193 1 26.696 26.196 27.196 -3.497 0 0 0 0.8634 1 17024 17024 9.544 1.5986 1 + 14143 23128 9539 9738 17080 17080 0.08104953930592274 FPVWVDQQTY 10 Unmodified _FPVWVDQQTY_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.8106689453125 2 641.808771 1281.60299 0.51198 0.00032859 -0.026296 -1.6877E-05 0.48569 0.00031172 641.8088976461493 74.7 0.47297 74.224 73.933 74.406 -0.47588 36 19 3 0 0 0 0.60623 1 40825 40825 10.824 8.7642 1 591860 14144 4039 9540 9739 17081 17081 -0.026549067021505834 FPVYPTRIL 9 Unmodified _FPVYPTRIL_ 0 0 0 ENST00000585919.5_1_19:10202002-10202975:+|nuORF;nc|ENSG00000130813|Q9NUL5-2|SHFL;ENSG00000130813|ENST00000253110|SHFL ENST00000585919.5_1_19:10202002-10202975:+|nuORF ENST00000585919.5_1_19:10202002-10202975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3238525390625 2 553.32386 1104.63317 0.61199 0.00033863 0.061535 3.4049E-05 0.67352 0.00037268 553.323666857975 69.17 0.32263 69.201 69.01 69.333 0.030922 34 15 3 0 0 0 0.12357 1 37996 37996 32.786 2.5609 1 2818800 14145 4266 9541 9740 17082 17082 0.08503496753701256 FPVYVLPKVEY 11 Unmodified _FPVYVLPKVEY_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000561328.1_1_15:60734582-60741127:-|nuORF;ENST00000558121.5_1_15:60715835-60734771:-|nuORF ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.3777465820312 2 677.376289 1352.73803 0.47787 0.0003237 0.57871 0.00039201 1.0566 0.00071571 677.3764342618085 77.986 0.23747 78.038 77.94 78.177 0.052452 20 9 3 0 0 0 0.065225 1 43075 43075 47.594 31.029 1 2188500 14146 4099 9542 9741 17083 17083 0.07576573439610002 FPVYVLPKVEY 11 Unmodified _FPVYVLPKVEY_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000561328.1_1_15:60734582-60741127:-|nuORF;ENST00000558121.5_1_15:60715835-60734771:-|nuORF ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MSMS AL20221201_MKP_PDAC_01 4 677.3745727539062 2 677.376289 1352.73803 NaN NaN NaN NaN NaN NaN NaN 92.165 1 85.989 85.489 86.489 -6.1757 0 0 0 0.00049278 1 60941 60941 84.522 62.932 1 14147 4099 9542 9741 17084 17084 0.07576573439610002 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.4594116210938 4 359.459053 1433.80711 0.17437 6.268E-05 0.68247 0.00024532 0.85684 0.000308 359.4592859408784 53.076 0.41507 53.012 52.804 53.219 -0.063423 83 20 6 0 0 0 0.24216 2 28709 28709;28820 23.964 23.51 1 143560000 14148 7813 9543 9742 17085;17086 17085 0.10755657459185386 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.9435729980469 3 478.942979 1433.80711 0.28193 0.00013503 0.98609 0.00047228 1.268 0.00060731 478.94338840910797 53.076 0.37309 53.013 52.804 53.177 -0.063423 76 18 6 0 0 0 0.020698 2 28821 28711;28821 47.053 40.429 1 108660000 14149 7813 9543 9742 17087;17088 17088 0.10755657459185386 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 717.9119262695312 2 717.91083 1433.80711 NaN NaN NaN NaN NaN NaN NaN 53.111 1 53.048 52.548 53.548 -0.063423 0 0 0 0.66488 1 28792 28792 18.373 11.65 1 14150 7813 9543 9742 17089 17089 0.10755657459185386 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.9427185058594 3 478.942979 1433.80711 0.18182 8.7082E-05 0.69 0.00033047 0.87182 0.00041755 478.9431498506453 85.285 0.85915 79.11 78.636 79.495 -6.1757 171 52 5 0 0 0 0.0018376 6 55882 55856;55882;56013;56141;56276;56417 68.484 59.24 1 215910000 14151 7813 9543 9742 17090;17091;17092;17093;17094;17095 17091 0.10755657459185386 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.7100524902344 4 359.459053 1433.80711 0.7816 0.00028095 0.80337 0.00028878 1.585 0.00056973 359.71008710191654 85.237 0.94769 79.062 78.618 79.566 -6.1757 194 57 4 0 0 0 0.056311 4 56350 55961;56093;56219;56350 34.79 30.247 1 174840000 14152 7813 9543 9742 17096;17097;17098;17099 17099 0.10755657459185386 FPWEVPKKLKY 11 Unmodified _FPWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20221201_MKP_PDAC_01 4 717.9112548828125 2 717.91083 1433.80711 NaN NaN NaN NaN NaN NaN NaN 85.292 1 79.117 78.617 79.617 -6.1757 0 0 0 3.6205000000000002E-34 1 56164 56164 158.08 130.45 1 14153 7813 9543 9742 17100 17100 0.10755657459185386 FPWFDLTA 8 Unmodified _FPWFDLTA_ 0 0 0 ENSG00000165555|ENST00000380835|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7438049316406 2 498.744911 995.475269 0.8092 0.00040358 1.7747 0.00088513 2.5839 0.0012887 498.7449816084836 84.267 0.59985 78.092 77.798 78.397 -6.1757 40 33 2 0 0 0 0.61462 1 55454 55454 24.674 9.8356 1 22573000 14154 7360 9544 9743 17101 17101 -0.022650025055440892 FPWFPHVIQP 10 Unmodified _FPWFPHVIQP_ 0 0 0 ENSG00000143867|ENST00000272223|OSR1 ENSG00000143867|ENST00000272223|OSR1 ENSG00000143867|ENST00000272223|OSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2222900390625 3 423.225598 1266.65496 0.80465 0.00034055 -2.8469 -0.0012049 -2.0423 -0.00086434 423.2234215072593 49.54 0.27156 49.491 49.412 49.683 -0.048824 25 13 3 0 0 0 0.63089 1 26753 26753 9.544 0 1 2805900 14155 5562 9545 9744 17102 17102 0.03230301502276234 FPWGDGNHTL 10 Unmodified _FPWGDGNHTL_ 0 0 0 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7870483398438 2 572.26453 1142.51451 0.76071 0.00043533 -0.7724 -0.00044202 -0.011692 -6.6911E-06 572.2640185359762 57.84 0.37671 57.774 57.593 57.97 -0.066036 31 18 2 0 0 0 0.20412 1 31511 31511 29.082 7.3349 1 1709100 14156 2825 9546 9745 17103 17103 -0.051049022219331164 FPWGDGNHTLF 11 Unmodified _FPWGDGNHTLF_ 0 0 0 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.7998657226562 2 645.798737 1289.58292 0.030301 1.9568E-05 0.65141 0.00042068 0.68171 0.00044025 645.7993137344114 78.841 0.62834 78.355 78.035 78.663 -0.48596 43 25 2 0 0 0 0.631 1 43123 43123 8.1555 0.8663 1 970400 14157 2825 9547 9746 17104 17104 -0.05028657642105827 FPWGDGNHTLF 11 Unmodified _FPWGDGNHTLF_ 0 0 0 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.7993774414062 2 645.798737 1289.58292 0.48217 0.00031138 0.013288 8.5813E-06 0.49546 0.00031997 645.7987094980077 78.249 0.93875 78.302 77.867 78.806 0.052452 126 38 4 0 0 0 0.0011221 4 43297 43080;43187;43297;43406 97.741 68.659 1 20754000 14158 2825 9547 9746 17105;17106;17107;17108 17107 -0.05028657642105827 FPWGDGNHTLF 11 Unmodified _FPWGDGNHTLF_ 0 0 0 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.7992553710938 2 645.798737 1289.58292 1.0294 0.00066482 -0.29681 -0.00019168 0.73264 0.00047314 645.7985118713751 94.519 1.3069 88.343 87.749 89.056 -6.1757 247 74 4 0 0 0 0.00037182 4 62390 62265;62390;62504;62965 117.84 73.979 1 79879000 14159 2825 9547 9746 17109;17110;17111;17112 17110 -0.05028657642105827 FPWKRRRWLVR 11 Unmodified _FPWKRRRWLVR_ 0 0 0 REV__nc|ENSG00000159082|O43426-4|SYNJ1 REV__nc|ENSG00000159082|O43426-4|SYNJ1 MSMS AL20221201_MKP_PDAC_01 4 800.47607421875 2 800.478403 1598.94225 NaN NaN NaN NaN NaN NaN NaN 101.01 1 94.83 94.33 95.33 -6.1757 0 0 0 0.94301 1 67685 67685 0.35063 0.043601 1 + 14160 21457 9548 9747 17113 17113 0.16673995164137523 FPWKSDSTW 9 Unmodified _FPWKSDSTW_ 0 0 0 ENST00000409465.5_1_2:191874614-191878272:-|nuORF ENST00000409465.5_1_2:191874614-191878272:-|nuORF ENST00000409465.5_1_2:191874614-191878272:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.269287109375 2 577.269281 1152.52401 0.54639 0.00031542 0.62689 0.00036188 1.1733 0.0006773 577.2691713443928 59.379 0.74361 59.326 59.011 59.754 -0.053059 91 37 3 0 0 0 0.029718 2 32289 32289;32551 55.503 36.246 1 7155900 14161 12963 9549 9748 17114;17115 17114 -0.04615133936431448 FPWKSDSTW 9 Unmodified _FPWKSDSTW_ 0 0 0 ENST00000409465.5_1_2:191874614-191878272:-|nuORF ENST00000409465.5_1_2:191874614-191878272:-|nuORF ENST00000409465.5_1_2:191874614-191878272:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2689208984375 2 577.269281 1152.52401 0.51671 0.00029828 -1.2183 -0.00070328 -0.70158 -0.000405 577.2684067756575 65.22 0.7416 59.044 58.752 59.494 -6.1757 96 41 3 0 0 0 0.025842 3 42353 42214;42353;42478 57.722 30.838 1 36523000 14162 12963 9549 9748 17116;17117;17118 17117 -0.04615133936431448 FPWLHASL 8 Unmodified _FPWLHASL_ 0 0 0 REV__nc|ENSG00000132530|Q6GPH4-5|XAF1 REV__nc|ENSG00000132530|Q6GPH4-5|XAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2703247070312 2 485.760895 969.507237 0.24275 0.00011792 -2.8282 -0.0013738 -2.5854 -0.0012559 485.75834354435733 63.919 0.64547 63.919 63.59 64.235 0 100 26 7 0 0 0 0.71616 1 35583 35583 15.768 6.4208 1 11192000 + 14163 29632 9550 9749 17119 17119 0.021264099682753113 FPWNSHVVL 9 Unmodified _FPWNSHVVL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.79052734375 2 549.790184 1097.56581 0.60668 0.00033355 -0.184 -0.00010116 0.42268 0.00023239 549.790279266209 71.798 0.37228 71.837 71.642 72.014 0.039032 52 17 4 0 0 0 0.023481 2 39473 39473;39580 60.074 30.992 1 12846000 14164 2128 9551 9750 17120;17121 17120 0.02093466542760325 FPWNSHVVL 9 Unmodified _FPWNSHVVL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.78955078125 2 549.790184 1097.56581 1.0162 0.00055872 -0.42944 -0.0002361 0.58681 0.00032262 549.7898450153715 88.714 0.92667 82.539 82.132 83.058 -6.1757 95 51 2 0 0 0 0.01958 5 58701 58331;58461;58582;58701;58863 63.961 26.818 1 18092000 14165 2128 9551 9750 17122;17123;17124;17125;17126 17125 0.02093466542760325 FPWPSLRTY 9 Unmodified _FPWPSLRTY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8040161132812 2 583.803291 1165.59203 0.68226 0.00039831 0.17148 0.00010011 0.85374 0.00049842 583.8035732427478 74.393 0.65257 74.438 74.029 74.682 0.04528 83 28 4 0 0 0 0.044042 2 41065 40964;41065 43.772 11.467 1 9018100 14166 6659 9552 9751 17127;17128 17128 0.015857357142522233 FPWPSLRTY 9 Unmodified _FPWPSLRTY_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8065185546875 2 583.803291 1165.59203 0.93448 0.00054555 0.95824 0.00055942 1.8927 0.001105 584.305062559742 90.478 0.88506 84.302 83.774 84.659 -6.1757 117 51 3 0 0 0 0.094905 1 59650 59650 36.506 5.8697 1 33391000 14167 6659 9552 9751 17129 17129 0.015857357142522233 FPWQQKVRF 9 Unmodified _FPWQQKVRF_ 0 0 0 nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5605773925781 3 412.560981 1234.66111 -0.19915 -8.216E-05 0.47989 0.00019798 0.28074 0.00011582 412.56103388110114 55.454 0.37925 55.385 55.117 55.497 -0.068737 35 18 2 0 0 0 0.031062 1 30087 30087 41.956 35.332 1 13124000 14168 16439 9553 9752 17130 17130 0.053168197337754464 FPWQQKVRF 9 Unmodified _FPWQQKVRF_ 0 0 0 nc|ENSG00000182541|P53671-2|LIMK2;nc|ENSG00000182541|P53671-3|LIMK2;ENSG00000182541|ENST00000331728|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 nc|ENSG00000182541|P53671-2|LIMK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5614929199219 3 412.560981 1234.66111 1.4659 0.00060479 -0.10072 -4.1552E-05 1.3652 0.00056324 412.5610077518821 79.725 1.0121 73.55 72.93 73.942 -6.1757 103 59 2 0 0 0 0.0090851 4 52252 51950;52082;52252;52421 66.457 53.601 1 17400000 14169 16439 9553 9752 17131;17132;17133;17134 17133 0.053168197337754464 FPWSEIRNISF 11 Unmodified _FPWSEIRNISF_ 0 0 0 ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;ENSG00000147065|ENST00000360270|MSN ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.3571166992188 2 698.356419 1394.69829 0.35476 0.00024775 -0.16046 -0.00011206 0.19431 0.00013569 698.3566077721789 98.584 0.14156 92.408 92.324 92.465 -6.1757 26 10 3 0 0 0 1.3728E-17 1 65383 65383 142.92 107.31 1 128020000 14170 1622 9554 9753 17135 17135 0.016724464888966395 FPWTLNMPHVY 11 Unmodified _FPWTLNMPHVY_ 0 0 0 REV__MSC|p.V176M|1|0.16|ENSG00000178860|chr8:71843653-71843653|C/T|missense_variant REV__MSC|p.V176M|1|0.16|ENSG00000178860|chr8:71843653-71843653|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2256164550781 3 468.897152 1403.66963 0.93225 0.00043713 0.028328 1.3283E-05 0.96058 0.00045041 469.2310883483599 47.655 0.27337 47.655 47.494 47.767 0 18 12 2 0 0 0 0.30303 1 26143 26143 3.0723 0 1 5219200 + 14171 29473 9555 9754 17136 17136 -0.01605994411897882 FPWTVPSQEY 10 Unmodified _FPWTVPSQEY_ 0 0 0 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2965698242188 2 627.295496 1252.57644 0.067784 4.2521E-05 1.5743 0.00098752 1.642 0.00103 627.2965549424412 76.282 0.31342 75.803 75.571 75.885 -0.47945 31 12 3 0 0 0 0.50944 1 41699 41699 15.847 9.124 1 1011500 14172 8077 9556 9755 17137 17137 -0.03974595593467711 FPWTVPSQEY 10 Unmodified _FPWTVPSQEY_ 0 0 0 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.296875 2 627.295496 1252.57644 NaN NaN NaN NaN NaN NaN NaN 76.369 1 75.889 75.389 76.389 -0.47945 0 0 0 0.83398 1 41803 41803 10.824 0.75 1 14173 8077 9556 9755 17138 17138 -0.03974595593467711 FPWTVPSQEY 10 Unmodified _FPWTVPSQEY_ 0 0 0 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.2963256835938 2 627.295496 1252.57644 0.33292 0.00020884 0.14987 9.4015E-05 0.4828 0.00030286 627.295705346278 75.755 0.36442 75.803 75.582 75.946 0.047943 26 16 2 0 0 0 0.16524 1 41796 41796 37.974 29.229 1 2399000 14174 8077 9556 9755 17139 17139 -0.03974595593467711 FPWYLPVHF 9 Unmodified _FPWYLPVHF_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3119506835938 2 603.310752 1204.60695 NaN NaN NaN NaN NaN NaN NaN 99.68 1 99.644 99.144 100.14 -0.036301 0 0 0 0.09083 1 55362 55362 45.75 24.879 1 14175 1687 9557 9756 17140 17140 0.01283227582212021 FPYALRAYLGY 11 Unmodified _FPYALRAYLGY_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.3518676757812 2 667.350606 1332.68666 0.55387 0.00036963 0.24392 0.00016278 0.79779 0.00053241 667.3508126493452 78.056 0.26237 78.108 77.964 78.226 0.052452 17 10 2 0 0 0 0.006372 1 43076 43076 72.968 57.719 1 3432900 14176 8193 9558 9757 17141 17141 0.033622494655446644 FPYALRAYLGY 11 Unmodified _FPYALRAYLGY_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3512573242188 2 667.350606 1332.68666 0.8457 0.00056438 0.14328 9.5618E-05 0.98898 0.00066 667.3506085432184 96.168 0.22206 89.992 89.862 90.084 -6.1757 31 13 3 0 0 0 1.3587E-06 1 63683 63683 103.35 74.859 1 30487000 14177 8193 9558 9757 17142 17142 0.033622494655446644 FPYALTKY 8 Unmodified _FPYALTKY_ 0 0 0 REV__nc|ENSG00000155755|Q96Q45-4|TMEM237 REV__nc|ENSG00000155755|Q96Q45-4|TMEM237 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.2345275878906 2 501.768386 1001.52222 1.1302 0.0005671 -0.11835 -5.9384E-05 1.0119 0.00050772 501.7683744748574 99.986 0.11546 93.81 93.769 93.884 -6.1757 12 7 2 0 0 0 8.7369 1 66745 66745 17.087 7.7391 1 17813000 + 14178 21286 9559 9758 17143 17143 0.02151857045600991 FPYARDDLSLY 11 Unmodified _FPYARDDLSLY_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.332275390625 2 680.33261 1358.65067 NaN NaN NaN NaN NaN NaN NaN 63.705 1 63.219 62.719 63.719 -0.48617 0 0 0 0.40138 1 34746 34746 34.222 16.075 1 14179 7582 9560 9759 17144 17144 -0.014312525019477107 FPYARDDLSLY 11 Unmodified _FPYARDDLSLY_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.3317260742188 2 680.33261 1358.65067 NaN NaN NaN NaN NaN NaN NaN 63.895 1 63.41 62.91 63.91 -0.48512 0 0 0 0.40138 1 34854 34854 34.222 16.075 1 14180 7582 9560 9759 17145 17145 -0.014312525019477107 FPYDPYERARQ 11 Unmodified _FPYDPYERARQ_ 0 0 0 nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2;ENST00000477078.2_1_10:106037658-106045722:+|nuORF nc|ENSG00000065621|Q9H4Y5-2|GSTO2 nc|ENSG00000065621|Q9H4Y5-2|GSTO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.5679931640625 3 481.233481 1440.67861 -0.16679 -8.0263E-05 1.5255 0.00073413 1.3587 0.00065387 481.5684736507146 36.988 0.27428 36.739 36.644 36.919 -0.2497 20 11 2 0 0 0 0.63534 1 19436 19436 5.1984 4.1849 1 1856500 14181 913 9561 9760 17146 17146 -0.024099295218775296 FPYDPYERARQ 11 Unmodified _FPYDPYERARQ_ 0 0 0 nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2;ENST00000477078.2_1_10:106037658-106045722:+|nuORF nc|ENSG00000065621|Q9H4Y5-2|GSTO2 nc|ENSG00000065621|Q9H4Y5-2|GSTO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2335815429688 3 481.233481 1440.67861 0.78052 0.00037561 0.29227 0.00014065 1.0728 0.00051626 481.2335285389826 41.175 0.29997 36.567 36.371 36.671 -4.6079 37 18 3 0 0 0 0.13335 1 24687 24687 26.121 19.497 1 11695000 14182 913 9561 9760 17147 17147 -0.024099295218775296 FPYDYSASEY 10 Unmodified _FPYDYSASEY_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2523193359375 2 621.253494 1240.49243 0.96183 0.00059754 -0.50876 -0.00031607 0.45307 0.00028147 621.2529572752073 54.446 0.80852 54.446 54.111 54.92 0 83 35 3 0 0 0 0.31022 2 30185 30185;30311 26.884 21.152 1 4115100 14183 1685 9562 9761 17148;17149 17148 -0.11819171481033663 FPYDYSASEY 10 Unmodified _FPYDYSASEY_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.25439453125 2 621.253494 1240.49243 0.38346 0.00023823 -0.01814 -1.127E-05 0.36532 0.00022696 621.2532452660953 55.345 0.65205 54.867 54.607 55.259 -0.47798 57 30 2 0 0 0 0.62068 2 30078 29965;30078 10.074 6.1295 1 2232700 14184 1685 9562 9761 17150;17151 17151 -0.11819171481033663 FPYDYSASEY 10 Unmodified _FPYDYSASEY_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2534790039062 2 621.253494 1240.49243 1.3159 0.00081751 0.30773 0.00019118 1.6236 0.0010087 621.2537022656622 62.968 0.95914 56.792 56.283 57.242 -6.1757 118 50 3 0 0 0 0.04925 2 40797 40797;40947 58.679 35.943 1 39731000 14185 1685 9562 9761 17152;17153 17152 -0.11819171481033663 FPYEEHLEM 9 Oxidation (M) _FPYEEHLEM(Oxidation (M))_ FPYEEHLEM(1) FPYEEHLEM(55) 0 0 1 ENST00000484500.5_1_3:125642769-125647435:+|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT ENST00000484500.5_1_3:125642769-125647435:+|nuORF ENST00000484500.5_1_3:125642769-125647435:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7595825195312 2 605.757889 1209.50123 -0.47647 -0.00028862 0.71 0.00043009 0.23353 0.00014146 605.7584199706846 41.828 0.24808 41.828 41.709 41.957 0 18 12 2 0 0 0 0.031062 1 22625 22625 54.774 35.517 1 2871700 14186 3398 9563 9762 17154 17154 604 -0.09514521116238939 FPYEESKEKF 10 Unmodified _FPYEESKEKF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.2114868164062 3 435.211683 1302.61322 -0.2068 -9.0003E-05 -0.43685 -0.00019012 -0.64366 -0.00028013 435.21140633830373 35.319 0.65746 35.319 35.016 35.674 0 108 33 4 0 0 0 0.052718 3 18779 18565;18666;18779 50.13 41.844 1 77839000 14187 16241 9564 9763 17155;17156;17157 17157 -0.025983437675904497 FPYEESKEKF 10 Unmodified _FPYEESKEKF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.3134765625 2 652.313886 1302.61322 -0.44268 -0.00028877 -0.079639 -5.195E-05 -0.52232 -0.00034071 652.3137118584442 35.331 0.44374 35.331 35.11 35.554 0 52 22 3 0 0 0 2.4958E-05 2 18614 18614;18740 124.95 90.021 1 7616100 14188 16241 9564 9763 17158;17159 17158 -0.025983437675904497 FPYEESKEKF 10 Unmodified _FPYEESKEKF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2106323242188 3 435.211683 1302.61322 -0.43049 -0.00018735 -0.14488 -6.3055E-05 -0.57537 -0.00025041 435.2114735343164 35.556 0.39528 35.333 35.151 35.546 -0.2224 31 17 2 0 0 0 0.10406 2 18578 18578;18682 33.821 25.377 1 4219400 14189 16241 9564 9763 17160;17161 17160 -0.025983437675904497 FPYEESKEKF 10 Unmodified _FPYEESKEKF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2119750976562 3 435.211683 1302.61322 0.76418 0.00033258 0.499 0.00021717 1.2632 0.00054975 435.2118305338836 39.624 0.53867 35.174 34.896 35.434 -4.4509 115 33 4 0 0 0 0.087164 3 23527 23398;23527;23663 37.251 25.076 1 159510000 14190 16241 9564 9763 17162;17163;17164 17163 -0.025983437675904497 FPYEESKEKF 10 Unmodified _FPYEESKEKF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF;ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3145141601562 2 652.313886 1302.61322 0.54414 0.00035495 -0.32683 -0.00021319 0.21731 0.00014176 652.3134391638104 39.666 0.46931 35.215 34.98 35.449 -4.4509 70 29 3 0 0 0 5.088E-07 2 23598 23463;23598 135.72 91.737 1 19857000 14191 16241 9564 9763 17165;17166 17166 -0.025983437675904497 FPYEGPLRL 9 Unmodified _FPYEGPLRL_ 0 0 0 ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD ENSG00000169660|ENST00000327949|HEXD ENSG00000169660|ENST00000327949|HEXD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2979125976562 2 546.297842 1090.58113 -0.046986 -2.5668E-05 0.65673 0.00035877 0.60975 0.0003331 546.2983508664607 69.128 0.62089 68.647 68.352 68.973 -0.48071 47 26 2 0 0 0 0.06294 2 37789 37789;37902 41.84 20.093 1 2515400 14192 7896 9565 9764 17167;17168 17167 0.039463333399453404 FPYEGPLRL 9 Unmodified _FPYEGPLRL_ 0 0 0 ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD ENSG00000169660|ENST00000327949|HEXD ENSG00000169660|ENST00000327949|HEXD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2975463867188 2 546.297842 1090.58113 0.59556 0.00032535 -0.72145 -0.00039413 -0.12589 -6.8775E-05 546.2978888180444 68.605 0.70424 68.63 68.3 69.004 0.025146 76 33 4 0 0 0 0.039985 1 37718 37718 49.933 23.049 1 5698000 14193 7896 9565 9764 17169 17169 0.039463333399453404 FPYGDASKF 9 Unmodified _FPYGDASKF_ 0 0 0 ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4;ENSG00000121905|ENST00000373467|HPCA;ENSG00000104490|ENST00000220931|NCALD ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2465209960938 2 516.245275 1030.476 0.40159 0.00020732 -0.12025 -6.2079E-05 0.28134 0.00014524 516.245705624496 46.786 0.69271 46.786 46.351 47.044 0 67 32 3 0 0 0 0.062454 2 25491 25491;25603 41.956 15.072 1 4947800 14194 3158 9566 9765 17170;17171 17170 -0.03802207856483619 FPYGDASKF 9 Unmodified _FPYGDASKF_ 0 0 0 ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4;ENSG00000121905|ENST00000373467|HPCA;ENSG00000104490|ENST00000220931|NCALD ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.24560546875 2 516.245275 1030.476 0.5877 0.00030339 -0.10654 -5.5003E-05 0.48115 0.00024839 516.2452161572712 47.035 0.75316 46.699 46.347 47.101 -0.33664 94 37 3 0 0 0 0.021948 4 25167 25064;25167;25276;25380 61.602 27.499 1 15139000 14195 3158 9566 9765 17172;17173;17174;17175 17173 -0.03802207856483619 FPYGDASKF 9 Unmodified _FPYGDASKF_ 0 0 0 ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4;ENSG00000121905|ENST00000373467|HPCA;ENSG00000104490|ENST00000220931|NCALD ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2453002929688 2 516.245275 1030.476 0.97131 0.00050143 -0.47071 -0.000243 0.50059 0.00025843 516.2450181412393 52.725 0.69925 46.99 46.672 47.371 -5.7345 98 38 3 0 0 0 0.0085386 3 33154 33154;33275;33390 100.09 50.158 1 90216000 14196 3158 9566 9765 17176;17177;17178 17176 -0.03802207856483619 FPYGDASKF 9 Unmodified _FPYGDASKF_ 0 0 0 ENSG00000115756|ENST00000307845|HPCAL1;ENSG00000163032|ENST00000295156|VSNL1;ENSG00000116983|ENST00000372844|HPCAL4;ENSG00000121905|ENST00000373467|HPCA;ENSG00000104490|ENST00000220931|NCALD ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.245275 1030.476 1.4447 0.00074583 -0.99697 -0.00051468 0.44775 0.00023115 516.2448105641739 46.717 0.30341 46.684 46.51 46.814 -0.033421 -0.10589 -0.00066131 NaN 100.09 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1238000 14197 3158 9566 9765 -0.03802207856483619 FPYGQYGLGSY 11 Unmodified _FPYGQYGLGSY_ 0 0 0 nc|ENSG00000071626|Q96EP5-2|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.2886352539062 2 626.287671 1250.56079 0.43985 0.00027547 0.84529 0.0005294 1.2851 0.00080487 626.789525305058 68.14 0.6821 67.658 67.37 68.052 -0.48219 85 31 3 0 0 0 0.631 1 37408 37408 8.1555 0 1 8675600 14198 16048 9567 9766 17179 17179 -0.0544688211052744 FPYGYHAGF 9 Unmodified _FPYGYHAGF_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF;ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000127663|O94953|KDM4B;ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F ENSG00000066135|ENST00000372396|KDM4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.781005859375 2 529.74016 1057.46577 NaN NaN NaN NaN NaN NaN NaN 52.774 1 52.71 52.21 53.21 -0.063423 0 0 0 0.38239 1 28599 28599 20.871 8.3397 1 14199 929;4024;10796;9466 9568 9767 17180 17180 -0.06066770791039744 FPYIEAEVKY 10 Unmodified _FPYIEAEVKY_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8201293945312 2 629.821347 1257.62814 0.12684 7.9884E-05 -1.1204 -0.00070563 -0.99353 -0.00062575 629.8206460768971 63.217 0.19881 62.731 62.642 62.841 -0.48617 14 8 2 0 0 0 0.41271 1 34486 34486 23.79 10.747 1 1378400 14200 3091 9569 9768 17181 17181 0.009631481004134912 FPYIEAEVKY 10 Unmodified _FPYIEAEVKY_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.81982421875 2 629.821347 1257.62814 0.63703 0.00040122 -0.97457 -0.0006138 -0.33754 -0.00021259 629.8210180960995 70.071 0.52287 63.895 63.58 64.103 -6.1757 70 29 3 0 0 0 0.0018732 2 45643 45643;45767 136.39 101.46 1 73110000 14201 3091 9569 9768 17182;17183 17182 0.009631481004134912 FPYIEENVKEY 11 Unmodified _FPYIEENVKEY_ 0 0 0 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 715.8429565429688 2 715.84555 1429.67655 -0.55505 -0.00039733 -0.31723 -0.00022709 -0.87228 -0.00062442 715.844644737044 55.977 0.24621 55.977 55.916 56.162 0 27 11 3 0 0 0 7.5243E-09 1 31113 31113 112.04 92.679 1 5742600 14202 5682 9570 9769 17184 17184 -0.02110403050323839 FPYIEENVKEY 11 Unmodified _FPYIEENVKEY_ 0 0 0 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 715.8487548828125 2 715.84555 1429.67655 -0.60573 -0.00043361 2.9607 0.0021194 2.3549 0.0016858 715.8475032043325 56.627 0.27673 56.141 56.032 56.309 -0.48554 27 16 2 0 0 0 0.083469 2 30749 30719;30749 44.392 24.766 1 9429900 14203 5682 9570 9769 17185;17186 17186 -0.02110403050323839 FPYIEENVKEY 11 Unmodified _FPYIEENVKEY_ 0 0 0 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 ENSG00000145293|ENST00000273920|ENOPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.8468017578125 2 715.84555 1429.67655 1.816 0.0013 -0.41133 -0.00029445 1.4047 0.0010056 715.8452400732269 62.767 0.53416 56.592 56.343 56.877 -6.1757 48 26 2 0 0 0 2.2417E-28 2 40513 40513;40657 160.97 128.93 1 25756000 14204 5682 9570 9769 17187;17188 17187 -0.02110403050323839 FPYKDDLLAL 10 Unmodified _FPYKDDLLAL_ 0 0 0 ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.82470703125 2 597.823889 1193.63323 -0.34104 -0.00020388 1.0957 0.00065503 0.75465 0.00045115 597.8243946773357 77.13 0.57407 76.648 76.361 76.935 -0.4826 51 25 3 0 0 0 0.32072 2 42248 42149;42248 26.268 8.1218 1 1471700 14205 984 9571 9770 17189;17190 17190 0.04415451963063788 FPYKDDLLAL 10 Unmodified _FPYKDDLLAL_ 0 0 0 ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3269653320312 2 597.823889 1193.63323 0.71977 0.00043029 0.51972 0.0003107 1.2395 0.000741 597.8240287338366 94.311 0.65348 88.135 87.842 88.496 -6.1757 75 37 3 0 0 0 0.06987 2 62394 62394;62523 53.404 24.322 1 12959000 14206 984 9571 9770 17191;17192 17191 0.04415451963063788 FPYKGYIWNY 10 Unmodified _FPYKGYIWNY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1;ENST00000503171.5_1_4:106317436-106374979:-|nuORF;PPA2-CD47|1|fusion;ENST00000499847.6_1_4:106367518-106395207:-|nuORF;ENST00000502833.5_1_4:106344467-106395207:-|nuORF;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2;ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENSG00000180817|ENST00000373232|PPA1;ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.8294067382812 2 675.829506 1349.64446 0.51567 0.00034851 -0.2628 -0.0001776 0.25288 0.0001709 676.3309110204697 69.918 0.64851 69.949 69.683 70.331 0.030922 78 32 3 0 0 0 0.01173 2 38488 38375;38488 99.799 72.17 1 12122000 14207 8926;14528 9572 9771 17193;17194 17194 -0.016377259428054458 FPYKGYIWNY 10 Unmodified _FPYKGYIWNY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1;ENST00000503171.5_1_4:106317436-106374979:-|nuORF;PPA2-CD47|1|fusion;ENST00000499847.6_1_4:106367518-106395207:-|nuORF;ENST00000502833.5_1_4:106344467-106395207:-|nuORF;ENST00000509426.5_1_4:106320018-106395207:-|nuORF;nc|ENSG00000138777|Q9H2U2-3|PPA2;ENSG00000138777|ENST00000341695|PPA2;nc|ENSG00000138777|Q9H2U2-2|PPA2;ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENSG00000180817|ENST00000373232|PPA1;ENST00000506815.5_3_4:106326917-106395140:-|nuORF ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.3308715820312 2 675.829506 1349.64446 0.080887 5.4666E-05 -1.0755 -0.00072686 -0.99462 -0.00067219 676.3299870700265 85.145 0.92994 78.969 78.397 79.327 -6.1757 130 56 3 0 0 0 0.01173 5 56046 55772;55906;56046;56174;56302 111.29 90.833 1 41394000 14208 8926;14528 9572 9771 17195;17196;17197;17198;17199 17197 -0.016377259428054458 FPYKIFKNTSF 11 Unmodified _FPYKIFKNTSF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;ENST00000413293.1_1_22:22663100-22664193:+|nuORF;ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENSG00000165733|ENST00000374518|BMS1;ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.5838012695312 3 464.583451 1390.72852 0.63033 0.00029284 0.022772 1.058E-05 0.6531 0.00030342 464.58343223801626 58.586 0.28522 58.525 58.394 58.679 -0.060719 39 14 4 0 0 0 0.23243 1 31893 31893 30.354 25.638 1 12378000 14209 7384;13430 9573 9772 17200 17200 0.04878805154089605 FPYLGSGERE 10 Unmodified _FPYLGSGERE_ 0 0 0 ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000465550.5_1_2:220096537-220099084:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.3087768554688 2 577.77747 1153.54039 1.5253 0.00088126 -0.90289 -0.00052167 0.62237 0.00035959 577.7768477758767 98.195 0.30077 92.019 91.847 92.148 -6.1757 60 19 4 0 0 0 0.23227 1 64991 64991 6.7232 0 1 90566000 14210 13737 9574 9773 17201 17201 -0.030240527703199405 FPYLVLTIF 9 Unmodified _FPYLVLTIF_ 0 0 0 ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000164363|ENST00000324642|SLC6A18 MSMS AL20221201_MKP_PDAC_01 4 556.82177734375 2 556.823161 1111.63177 NaN NaN NaN NaN NaN NaN NaN 102.51 1 96.335 95.835 96.835 -6.1757 0 0 0 0.70111 1 68788 68788 9.3474 0.75416 1 14211 7188 9575 9774 17202 17202 0.08041862664913424 FPYLYFYGQQF 11 Unmodified _FPYLYFYGQQF_ 0 0 0 REV__ENSG00000183034|ENST00000331427|OTOP2 REV__ENSG00000183034|ENST00000331427|OTOP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.5679016113281 3 491.567689 1471.68124 1.2278 0.00060354 0.60192 0.00029589 1.8297 0.00089943 491.5678941782806 47.153 0.21633 47.119 47.069 47.285 -0.033417 16 10 2 0 0 0 0.72981 1 25443 25443 1.4551 0 1 3414900 + 14212 23312 9576 9775 17203 17203 -0.03573474116933539 FPYLYFYGQQF 11 Unmodified _FPYLYFYGQQF_ 0 0 0 REV__ENSG00000183034|ENST00000331427|OTOP2 REV__ENSG00000183034|ENST00000331427|OTOP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 491.567689 1471.68124 0.82327 0.00040469 1.74 0.00085534 2.5633 0.00126 491.56850209572787 47.434 0.22415 47.082 46.959 47.183 -0.3526 -0.018898 0.0011135 NaN 1.4551 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4010900 + 14213 23312 9576 9775 -0.03573474116933539 FPYLYFYGQQF 11 Unmodified _FPYLYFYGQQF_ 0 0 0 REV__ENSG00000183034|ENST00000331427|OTOP2 REV__ENSG00000183034|ENST00000331427|OTOP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 491.567689 1471.68124 1.2278 0.00060354 0.60192 0.00029589 1.8297 0.00089943 491.5678941782806 47.153 0.21633 47.119 47.069 47.285 -0.033417 0.018898 -0.00056485 NaN 1.4551 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3414900 + 14214 23312 9576 9775 -0.03573474116933539 FPYPTKAEL 9 Unmodified _FPYPTKAEL_ 0 0 0 ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2843627929688 2 533.2844 1064.55425 0.46638 0.00024871 -0.80563 -0.00042963 -0.33925 -0.00018092 533.283639241882 52.428 0.32545 51.994 51.891 52.216 -0.43367 20 16 2 0 0 0 0.25681 1 28339 28339 19.257 4.6753 1 1893300 14215 8410 9577 9776 17204 17204 0.024552247287601858 FPYPYAERL 9 Unmodified _FPYPYAERL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2955322265625 2 578.295299 1154.57605 0.336 0.00019431 -0.31088 -0.00017978 0.025116 1.4524E-05 578.2952047329698 58.7 0.5308 58.21 57.943 58.474 -0.49079 68 25 3 0 0 0 0.040683 3 31957 31857;31957;32061 49.554 15.153 1 16259000 14216 2325 9578 9777 17205;17206;17207 17206 0.004940294773177811 FPYPYAERL 9 Unmodified _FPYPYAERL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.296630859375 2 578.295299 1154.57605 0.98661 0.00057055 -0.62117 -0.00035922 0.36544 0.00021133 578.2950248511221 58.345 0.35481 58.285 58.077 58.432 -0.060719 27 17 2 0 0 0 0.11784 1 31723 31723 31.268 8.5321 1 3207100 14217 2325 9578 9777 17208 17208 0.004940294773177811 FPYPYAERL 9 Unmodified _FPYPYAERL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2974853515625 2 578.295299 1154.57605 1.316 0.00076105 -2.034 -0.0011763 -0.71797 -0.0004152 578.7948627807054 63.893 1.0935 57.718 57.338 58.431 -6.1757 103 59 2 0 0 0 0.0082353 4 41567 41296;41435;41567;41705 96.111 32.055 1 110990000 14218 2325 9578 9777 17209;17210;17211;17212 17211 0.004940294773177811 FPYPYAERL 9 Unmodified _FPYPYAERL_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 578.295299 1154.57605 1.2624 0.00073006 -2.3358 -0.0013508 -1.0733 -0.00062071 578.795648078954 64.648 0.078064 58.473 58.431 58.509 -6.1757 0.19917 -0.0021714 NaN 49.554 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 4548300 14219 2325 9578 9777 0.004940294773177811 FPYPYPFVF 9 Unmodified _FPYPYPFVF_ 0 0 0 REV__ENSG00000181617|ENST00000317987|FDCSP REV__ENSG00000181617|ENST00000317987|FDCSP MSMS AL20221201_MKP_PDAC_01 4 588.7908935546875 2 588.791861 1175.56917 NaN NaN NaN NaN NaN NaN NaN 100.61 1 94.437 93.937 94.937 -6.1757 0 0 0 0.24185 1 67324 67324 28.173 4.1527 1 + 14220 23215 9579 9778 17213 17213 -0.011592834032626342 FPYPYTYMAA 10 Unmodified _FPYPYTYMAA_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59485297-59485864:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5187377929688 3 408.519571 1222.53688 NaN NaN NaN NaN NaN NaN NaN 14.87 1 14.87 14.37 15.37 0 0 0 0 0.98914 1 7110 7110 0.77653 0.27058 1 14221 4671 9580 9779 17214 17214 -0.06548438868549056 FPYQDKLVGY 10 Unmodified _FPYQDKLVGY_ 0 0 0 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.312744140625 2 615.313689 1228.61282 -0.16774 -0.00010321 0.45077 0.00027736 0.28302 0.00017415 615.314163458715 56.72 0.28764 56.235 56.122 56.41 -0.48554 36 14 3 0 0 0 0.044582 2 30783 30783;30890 78.06 51.792 1 9502500 14222 5568 9581 9780 17215;17216 17215 0.0076628130325389066 FPYQDKLVGY 10 Unmodified _FPYQDKLVGY_ 0 0 0 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3157958984375 2 615.313689 1228.61282 0.14678 9.0315E-05 0.25344 0.00015594 0.40022 0.00024626 615.3137214284833 56.352 0.18647 56.283 56.194 56.38 -0.068737 16 9 2 0 0 0 0.044582 1 30649 30649 78.06 55.324 1 3890700 14223 5568 9581 9780 17217 17217 0.0076628130325389066 FPYQDKLVGY 10 Unmodified _FPYQDKLVGY_ 0 0 0 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 ENSG00000143942|ENST00000295304|CHAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.31298828125 2 615.313689 1228.61282 0.73806 0.00045414 -0.36735 -0.00022604 0.37071 0.0002281 615.3133117379351 63.096 0.62632 56.92 56.653 57.279 -6.1757 77 33 3 0 0 0 0.0024136 3 40786 40653;40786;40929 110.79 78.007 1 40597000 14224 5568 9581 9780 17218;17219;17220 17219 0.0076628130325389066 FPYQSLLDKL 10 Unmodified _FPYQSLLDKL_ 0 0 0 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 REV__nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3360595703125 2 612.337164 1222.65977 0.55996 0.00034289 -0.36422 -0.00022302 0.19575 0.00011986 612.336646689668 74.002 0.25751 74.046 73.924 74.182 0.043976 22 11 2 0 0 0 0.34249 1 40781 40781 24.991 3.454 1 2313100 + 14225 20195 9582 9781 17221 17221 0.05735140854358178 FPYQYGMCN 9 Unmodified _FPYQYGMCN_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6 REV__nc|ENSG00000129204|P35125-2|USP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.722900390625 2 561.722795 1121.43104 0.42662 0.00023964 -0.54779 -0.00030771 -0.12118 -6.8069E-05 561.7226130979684 39.407 0.37254 39.407 39.202 39.575 0 39 17 3 0 0 0 0.49272 1 21127 21127 7.9102 2.6795 1 4089900 + 14226 19656 9583 9782 17222 17222 -0.12482097985662222 FPYRDEGRL 9 Unmodified _FPYRDEGRL_ 0 0 0 ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8646545410156 3 384.864729 1151.57236 -1.1119 -0.00042794 1.0058 0.00038709 -0.10614 -4.085E-05 384.86528122211035 32.337 0.37006 32.337 32.023 32.393 0 27 18 2 0 0 0 0.21643 1 16852 16852 20.581 14.389 1 2302900 14227 15783 9584 9783 17223 17223 0.002633597034673585 FPYSENKEKY 10 Unmodified _FPYSENKEKY_ 0 0 0 ENSG00000164985|ENST00000380733|PSIP1;ENST00000487363.5_1_9:15485934-15510186:-|nuORF;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;ENST00000463712.6_1_9:15489396-15510916:-|nuORF ENSG00000164985|ENST00000380733|PSIP1;ENST00000463712.6_1_9:15489396-15510916:-|nuORF ENSG00000164985|ENST00000380733|PSIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.543212890625 3 435.543432 1303.60847 -0.37034 -0.0001613 -0.21183 -9.226E-05 -0.58217 -0.00025356 435.5432990212263 26.261 0.73407 26.261 26.006 26.74 0 121 37 5 0 0 0 0.084474 3 13415 13415;13513;13614 50.13 35.912 1 12307000 14228 7276;13701 9585 9784 17224;17225;17226 17224 -0.031192279103152032 FPYSENKEKY 10 Unmodified _FPYSENKEKY_ 0 0 0 ENSG00000164985|ENST00000380733|PSIP1;ENST00000487363.5_1_9:15485934-15510186:-|nuORF;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;ENST00000463712.6_1_9:15489396-15510916:-|nuORF ENSG00000164985|ENST00000380733|PSIP1;ENST00000463712.6_1_9:15489396-15510916:-|nuORF ENSG00000164985|ENST00000380733|PSIP1 MSMS AL20221201_MKP_PDAC_01 4 435.5432434082031 3 435.543432 1303.60847 NaN NaN NaN NaN NaN NaN NaN 29.384 1 26.083 25.583 26.583 -3.3016 0 0 0 0.20306 1 16499 16499 42.835 21.245 1 14229 7276;13701 9585 9784 17227 17227 -0.031192279103152032 FPYSYEVAL 9 Unmodified _FPYSYEVAL_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7681884765625 2 544.768583 1087.52261 -1.0448 -0.00056917 0.048219 2.6268E-05 -0.99658 -0.0005429 544.768709269661 77.902 0.71575 77.419 77.066 77.782 -0.4826 86 45 2 0 0 0 0.019979 3 42682 42578;42682;42797 63.563 41.816 1 7158600 14230 1157 9586 9785 17228;17229;17230 17229 -0.01764768025191188 FPYSYEVAL 9 Unmodified _FPYSYEVAL_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.76806640625 2 544.768583 1087.52261 0.032238 1.7562E-05 -0.5362 -0.0002921 -0.50396 -0.00027454 544.7681767946054 85.405 0.73764 79.229 78.877 79.615 -6.1757 91 45 3 0 0 0 0.0081063 2 56072 56072;56213 93.883 57.756 1 43927000 14231 1157 9586 9785 17231;17232 17231 -0.01764768025191188 FPYSYEVAL 9 Unmodified _FPYSYEVAL_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 1089.60546875 1 1088.52989 1087.52261 -0.045029 -4.9016E-05 0.27385 0.00029809 0.22882 0.00024907 1088.5309492132305 85.377 0.34119 79.201 79.037 79.378 -6.1757 29 21 2 0 0 0 0.038285 1 56206 56206 50.855 31.598 1 16124000 14232 1157 9586 9785 17233 17233 -0.01764768025191188 FPYVEGDKSF 10 Unmodified _FPYVEGDKSF_ 0 0 0 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7855834960938 2 594.782222 1187.54989 -0.24648 -0.0001466 1.302 0.00077439 1.0555 0.00062779 594.7829165366752 52.095 0.44738 52.095 51.996 52.443 0 25 19 2 0 0 0 0.14944 1 28842 28842 53.404 32.533 1 2093600 14233 5861 9587 9786 17234 17234 -0.03638284484827636 FPYVEGDKSF 10 Unmodified _FPYVEGDKSF_ 0 0 0 nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7848510742188 2 594.782222 1187.54989 1.1346 0.00067483 0.34608 0.00020584 1.4807 0.00088067 594.7825335013616 58.89 0.3385 52.815 52.635 52.973 -6.0745 27 18 2 0 0 0 0.019562 1 37761 37761 94.909 53.069 1 12007000 14234 5861 9587 9786 17235 17235 -0.03638284484827636 FPYVELDLHSY 11 Unmodified _FPYVELDLHSY_ 0 0 0 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1 ENST00000462386.5_1_2:209112975-209118617:-|nuORF ENST00000462386.5_1_2:209112975-209118617:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 691.83544921875 2 691.834985 1381.65542 NaN NaN NaN NaN NaN NaN NaN 89.761 1 83.585 83.085 84.085 -6.1757 0 0 0 1.6761E-09 1 59258 59258 110.67 79.406 1 14235 5051 9588 9787 17236 17236 -0.020143683591868466 FPYVLHFYH 9 Unmodified _FPYVLHFYH_ 0 0 0 ENSG00000156486|ENST00000287042|KCNS2 ENSG00000156486|ENST00000287042|KCNS2 ENSG00000156486|ENST00000287042|KCNS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8778381347656 3 408.206315 1221.59712 0.30377 0.000124 4.4302 0.0018084 4.7339 0.0019324 408.543270437968 16.553 0.062889 13.996 13.981 14.044 -2.557 10 8 2 0 0 0 0.57331 1 8586 8586 2.9952 1.8019 1 1603600 14236 6458 9589 9788 17237 17237 -0.004819604231443009 FPYVPFPGAF 10 Unmodified _FPYVPFPGAF_ 0 0 0 ENSG00000232237|ENST00000449188|ASCL5;nc|ENSG00000232237|Q7RTU5|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3316650390625 2 571.289485 1140.56442 0.46831 0.00026754 1.0285 0.00058755 1.4968 0.00085509 571.2902526253175 52.817 0.63346 52.753 52.482 53.115 -0.063423 52 31 2 0 0 0 0.21472 1 28811 28811 24.674 10.092 1 1843900 14237 10624 9590 9789 17238 17238 -0.00024167546007447527 FPYYPSPGVLF 11 Unmodified _FPYYPSPGVLF_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.828125 2 643.826432 1285.63831 4.4699 0.0028779 -0.13044 -8.3978E-05 4.3395 0.0027939 643.8268114033006 99.101 0.32541 99.072 98.92 99.246 -0.028282 34 11 5 0 0 0 0.032115 1 55046 55046 54.774 36.627 1 3635400 14238 4012 9591 9790 17239 17239 0.0069175582566458615 FPYYPSPGVLF 11 Unmodified _FPYYPSPGVLF_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.824951171875 2 643.826432 1285.63831 1.4341 0.00092332 -1.2391 -0.00079779 0.19499 0.00012554 643.8255740421472 100.82 0.16306 94.644 94.57 94.734 -6.1757 27 10 4 0 0 0 0.0012864 1 67507 67507 81.613 55.345 1 44441000 14239 4012 9591 9790 17240 17240 0.0069175582566458615 FQAAERGG 8 Unmodified _FQAAERGG_ 0 0 0 REV__nc|ENSG00000170836|O15297-2|PPM1D REV__nc|ENSG00000170836|O15297-2|PPM1D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2073364257812 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 28.969 1 28.969 28.469 29.469 0 0 0 0 0.97444 1 14988 14988 3.9444 1.0552 1 + 14240 22515 9592 9791 17241 17241 -0.02540801001998716 FQARFPHF 8 Unmodified _FQARFPHF_ 0 0 0 nc|ENSG00000085185|Q5H9F3-4|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2691650390625 2 525.269419 1048.52428 0.28905 0.00015183 -1.157 -0.00060775 -0.86797 -0.00045592 525.2686953572335 95.145 0.30008 94.777 94.717 95.017 -0.36815 16 13 2 0 0 0 0.80676 1 51986 51986 2.5775 0.27475 1 316530 14241 1402 9593 9792 17242 17242 0.001963305740900978 FQAVFSVQDQ 10 Unmodified _FQAVFSVQDQ_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.1929626464844 3 390.192623 1167.55604 0.96935 0.00037823 0.32268 0.00012591 1.292 0.00050414 390.19265033993327 28.4 0.41739 25.252 25.059 25.476 -3.1482 58 21 4 0 0 0 0.68209 1 15918 15918 4.7159 1.9807 1 29600000 14242 10540 9594 9793 17243 17243 -0.021037662532762624 FQCHLEDLKW 10 Unmodified _FQCHLEDLKW_ 0 0 0 REV__nc|ENSG00000140367|Q8WVN8-2|UBE2Q2 REV__nc|ENSG00000140367|Q8WVN8-2|UBE2Q2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8065795898438 2 659.816073 1317.61759 -0.017454 -1.1517E-05 -0.99104 -0.0006539 -1.0085 -0.00066542 659.8159179098741 50.449 0.27773 50.449 50.282 50.56 0 26 12 3 0 0 0 0.71123 1 27716 27716 1.6526 0.32309 1 4056700 + 14243 20463 9595 9794 17244 17244 -0.0285115782567118 FQCIFLNNII 10 Unmodified _FQCIFLNNII_ 0 0 0 REV__ENST00000371432.7_1_6:45515222-45515519:+|nuORF REV__ENST00000371432.7_1_6:45515222-45515519:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2422485351562 3 408.886365 1223.63727 -0.15619 -6.3865E-05 2.9256 0.0011962 2.7694 0.0011324 408.88722138106266 18.497 0.11637 18.503 18.429 18.545 0.0060463 7 5 2 0 0 0 0.23896 1 9380 9380 1.7423 0 1 392420 + 14244 26084 9596 9795 17245 17245 0.0343921818509898 FQDESCFLFS 10 Unmodified _FQDESCFLFS_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000464787.1_1_3:33434031-33437792:-|nuORF;ENST00000466441.5_1_3:33431825-33437792:-|nuORF;ENST00000492136.1_1_3:33434031-33434148:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.17431640625 3 408.174352 1221.50123 0.80028 0.00032666 -1.3051 -0.00053272 -0.50486 -0.00020607 408.17396695403755 49.639 0.2552 49.247 49.119 49.374 -0.3923 35 12 4 0 0 0 0.67033 1 26717 26717 3.3196 0 1 2411800 14245 6267 9597 9796 17246 17246 -0.10066521116232252 FQDGFDPCCL 10 Unmodified _FQDGFDPCCL_ 0 0 0 REV__ENST00000371224.6_1_10:97393377-97396862:-|nuORF REV__ENST00000371224.6_1_10:97393377-97396862:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8213500976562 3 382.152782 1143.43652 0.42737 0.00016332 3.5766 0.0013668 4.004 0.0015301 382.48780705253097 60.116 0.31756 60.116 59.983 60.301 0 34 13 4 0 0 0 0.23981 1 33523 33523 0.77653 0.078866 1 1811100 + 14246 26077 9598 9797 17247 17247 -0.1294641919384958 FQDPVPLTV 9 Unmodified _FQDPVPLTV_ 0 0 0 nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2768859863281 2 508.276575 1014.5386 0.67459 0.00034288 0.5583 0.00028377 1.2329 0.00062665 508.27670657831675 74.099 0.36988 74.099 73.901 74.271 0 37 17 3 0 0 0 0.047788 1 41212 41212 45.7 20.3 1 945660 14247 3661 9599 9798 17248 17248 0.03190938211696448 FQDPVPLTV 9 Unmodified _FQDPVPLTV_ 0 0 0 nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.276575 1014.5386 0.41664 0.00021177 1.4199 0.00072171 1.8366 0.00093348 508.277328915009 74.551 0.39107 74.075 73.84 74.231 -0.47588 -0.011817 0.00056193 NaN 45.7 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 770780 14248 3661 9599 9798 0.03190938211696448 FQDTGQCGGSI 11 Unmodified _FQDTGQCGGSI_ 0 0 0 ENST00000480230.5_1_2:241463300-241465350:-|nuORF;ENST00000484526.5_1_2:241463300-241500177:-|nuORF;ENST00000459901.5_1_2:241463300-241492642:-|nuORF;nc|ENSG00000144504|Q9P2S6-3|ANKMY1;nc|ENSG00000144504|Q9P2S6-4|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1;ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6-2|ANKMY1 ENST00000480230.5_1_2:241463300-241465350:-|nuORF;nc|ENSG00000144504|Q9P2S6-2|ANKMY1 ENST00000480230.5_1_2:241463300-241465350:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7392578125 2 556.737488 1111.46042 NaN NaN NaN NaN NaN NaN NaN 57.719 1 57.719 57.219 58.219 0 0 0 0 0.67092 1 32126 32126 18.146 0.011366 1 14249 14054;16249 9600 9799 17249 17249 -0.09084862435815921 FQECTEFF 8 Unmodified _FQECTEFF_ 0 0 0 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 ENSG00000230268|ENST00000473520|SSU72L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7138061523438 2 525.715493 1049.41643 0.24485 0.00012872 -2.4727 -0.0012999 -2.2278 -0.0011712 525.7137574665263 42.02 0.22422 42.02 41.881 42.105 0 16 11 2 0 0 0 0.67686 1 22714 22714 18.135 0 1 3536800 14250 10613 9601 9800 17250 17250 -0.10629846862184422 FQEFAALTKE 10 Unmodified _FQEFAALTKE_ 0 0 0 nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MSMS AL20221201_MKP_PDAC_01 4 395.2059936523438 3 395.20464 1182.59209 NaN NaN NaN NaN NaN NaN NaN 81.283 1 75.107 74.607 75.607 -6.1757 0 0 0 0.91954 1 53345 53345 6.6235 0 1 14251 16228 9602 9801 17251 17251 0.008096909235518979 FQEQVLCHIW 10 Unmodified _FQEQVLCHIW_ 0 0 0 ENST00000260983.7_1_2:197065763-197065988:-|nuORF ENST00000260983.7_1_2:197065763-197065988:-|nuORF ENST00000260983.7_1_2:197065763-197065988:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.88232421875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 40.55 1 40.247 39.747 40.747 -0.30304 0 0 0 1.0029 1 21439 21439 0.12286 0 1 14252 11229 9603 9802 17252 17252 -0.016068539630396117 FQERESLVW 9 Unmodified _FQERESLVW_ 0 0 0 REV__nc|ENSG00000049449|Q15293-2|RCN1 REV__nc|ENSG00000049449|Q15293-2|RCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.302490234375 2 597.301113 1192.58767 0.61471 0.00036717 1.9976 0.0011931 2.6123 0.0015603 597.3021892968547 71.942 0.2528 71.466 71.319 71.572 -0.47609 22 9 3 0 0 0 0.28023 1 39362 39362 18.146 1.9972 1 1545900 + 14253 17250 9604 9803 17253 17253 -0.00091773499343617 FQERESLVW 9 Unmodified _FQERESLVW_ 0 0 0 REV__nc|ENSG00000049449|Q15293-2|RCN1 REV__nc|ENSG00000049449|Q15293-2|RCN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 597.301113 1192.58767 0.61471 0.00036717 1.9976 0.0011931 2.6123 0.0015603 597.3021892968547 71.942 0.2528 71.466 71.319 71.572 -0.47609 0 0 NaN 18.146 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1545900 + 14254 17250 9604 9803 -0.00091773499343617 FQERLMQL 8 Unmodified _FQERLMQL_ 0 0 0 REV__ENSG00000188277|ENST00000344320|C15orf62 REV__ENSG00000188277|ENST00000344320|C15orf62 MSMS AL20221201_MKP_PDAC_01 4 532.7811279296875 2 532.781502 1063.54845 NaN NaN NaN NaN NaN NaN NaN 56.687 1 50.71 50.21 51.21 -5.9769 0 0 0 0.6528 1 36194 36194 30.637 0.41173 1 + 14255 23700 9605 9804 17254 17254 0.019218029454577845 FQESFVTSGVF 11 Unmodified _FQESFVTSGVF_ 0 0 0 nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC nc|ENSG00000141905|P08651-4|NFIC nc|ENSG00000141905|P08651-4|NFIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5358581542969 3 416.536278 1246.587 -0.36241 -0.00015095 -1.5849 -0.00066018 -1.9473 -0.00081113 416.5355316001805 20.49 0.20374 20.519 20.418 20.622 0.028357 24 10 3 0 0 0 0.7187 1 10346 10346 1.0136 0 1 1731700 14256 5379 9606 9805 17255 17255 -0.026426129390301867 FQETFIEY 8 Unmodified _FQETFIEY_ 0 0 0 REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF REV__ENST00000571666.1_1_16:21273345-21289551:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7235107421875 2 538.75039 1075.48623 0.61164 0.00032952 -0.017635 -9.501E-06 0.59401 0.00032002 538.7506938646228 60.069 0.30183 60.069 59.923 60.225 0 29 13 3 0 0 0 8.7369 1 33442 33442 10.074 2.1638 1 3464800 + 14257 18300 9607 9806 17256 17256 -0.04849644921910112 FQETQPAYF 9 Unmodified _FQETQPAYF_ 0 0 0 ENST00000307602.8_1_8:42873688-42873757:+|nuORF ENST00000307602.8_1_8:42873688-42873757:+|nuORF ENST00000307602.8_1_8:42873688-42873757:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7620849609375 2 565.761289 1129.50803 0.77308 0.00043738 1.106 0.00062571 1.879 0.0010631 565.7621119038877 67.79 0.31096 67.308 67.142 67.453 -0.48218 35 13 3 0 0 0 0.23158 1 37019 37019 20.454 0 1 4101900 14258 11641 9608 9807 17257 17257 -0.051548401733498395 FQGEPPSL 8 Unmodified _FQGEPPSL_ 0 0 0 nc|ENSG00000173933|Q9BWF3-2|RBM4 nc|ENSG00000173933|Q9BWF3-2|RBM4 nc|ENSG00000173933|Q9BWF3-2|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7195739746094 2 437.718893 873.423233 0.24096 0.00010547 0.11513 5.0396E-05 0.3561 0.00015587 437.7189338215114 91.122 0.35152 91.122 90.949 91.301 0 33 19 2 0 0 0 0.79669 1 50446 50446 8.5933 0 1 1571700 14259 16392 9609 9808 17258 17258 -0.01854165919269235 FQGFNWGIM 9 Unmodified _FQGFNWGIM_ 0 0 0 REV__ENSG00000125780|ENST00000381458|TGM3 REV__ENSG00000125780|ENST00000381458|TGM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1730041503906 3 367.172505 1098.49569 0.31055 0.00011403 -0.31748 -0.00011657 -0.0069281 -2.5438E-06 367.1727527181681 74.389 0.81151 74.389 74.137 74.948 0 59 38 3 0 0 0 0.58466 1 41330 41330 1.1933 0.12188 1 2385100 + 14260 19514 9610 9809 17259 17259 -0.04962155117391376 FQGLLRLKL 9 Unmodified _FQGLLRLKL_ 0 0 0 ENST00000451805.2_1_1:220441179-220441248:-|nuORF ENST00000451805.2_1_1:220441179-220441248:-|nuORF ENST00000451805.2_1_1:220441179-220441248:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2386474609375 3 363.237726 1086.69135 1.8838 0.00068427 -0.32523 -0.00011814 1.5586 0.00056614 363.23761767752666 37.288 0.46423 33.005 32.765 33.229 -4.2835 57 27 3 0 0 0 0.16226 1 21882 21882 19.362 0 1 15043000 14261 13530 9611 9810 17260 17260 0.15147178398979122 FQGWNCGDYF 10 Unmodified _FQGWNCGDYF_ 0 0 0 ENSG00000120054|ENST00000370418|CPN1 ENSG00000120054|ENST00000370418|CPN1 ENSG00000120054|ENST00000370418|CPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2471923828125 2 618.742573 1235.47059 0.48202 0.00029825 0.099376 6.1488E-05 0.5814 0.00035974 618.7427682117881 91.949 0.53346 91.468 91.258 91.791 -0.48093 151 28 8 0 0 0 0.70951 2 50222 50222;50233 1.8442 0.36234 1 22809000 14262 3492 9612 9811 17261;17262 17261 -0.1377225471062502 FQHERLVW 8 Unmodified _FQHERLVW_ 0 0 0 nc|ENSG00000061337|Q9Y250-3|LZTS1;ENSG00000061337|ENST00000381569|LZTS1 nc|ENSG00000061337|Q9Y250-3|LZTS1 nc|ENSG00000061337|Q9Y250-3|LZTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7930297851562 2 557.793258 1113.57196 0.81084 0.00045228 -1.645 -0.00091759 -0.8342 -0.00046531 557.7920692439521 47.89 0.19194 47.89 47.767 47.959 0 16 8 2 0 0 0 0.63229 1 26242 26242 23.148 0.41214 1 2971300 14263 836 9613 9812 17263 17263 0.01971984774286284 FQHERLVW 8 Unmodified _FQHERLVW_ 0 0 0 nc|ENSG00000061337|Q9Y250-3|LZTS1;ENSG00000061337|ENST00000381569|LZTS1 nc|ENSG00000061337|Q9Y250-3|LZTS1 nc|ENSG00000061337|Q9Y250-3|LZTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.792724609375 2 557.793258 1113.57196 0.70777 0.00039479 -1.2642 -0.00070518 -0.55646 -0.00031039 557.7924411347587 48.173 0.38734 47.821 47.615 48.002 -0.3526 68 19 5 0 0 0 0.6895 1 25890 25890 18.135 1.0221 1 100410000 14264 836 9613 9812 17264 17264 0.01971984774286284 FQHGVIAAV 9 Unmodified _FQHGVIAAV_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8;ENST00000484003.1_1_6:32810548-32812193:-|nuORF ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2641296386719 2 471.263802 940.513051 0.74924 0.00035309 0.7314 0.00034468 1.4806 0.00069777 471.26399957883837 47.164 0.23377 42.084 41.977 42.211 -5.0805 22 17 2 0 0 0 0.25681 1 29273 29273 19.257 1.122 1 12232000 14265 10257 9614 9813 17265 17265 0.040415084799292345 FQIEASGP 8 Unmodified _FQIEASGP_ 0 0 0 ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.4141845703125 1 848.414859 847.407583 0.23567 0.00019995 0.59799 0.00050734 0.83367 0.00070729 848.4154225373015 57.85 0.27439 57.85 57.716 57.99 0 20 11 2 0 0 0 0.80143 1 32153 32153 5.7604 0 1 941180 14266 9102 9615 9814 17266 17266 -0.022224524363309683 FQINQDEEEEE 11 Unmodified _FQINQDEEEEE_ 0 0 0 ENSG00000116251|ENST00000234875|RPL22 ENSG00000116251|ENST00000234875|RPL22 ENSG00000116251|ENST00000234875|RPL22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 705.288818359375 2 705.288793 1408.56303 NaN NaN NaN NaN NaN NaN NaN 16.333 1 16.338 15.838 16.838 0.0050564 0 0 0 0.9435 1 8186 8186 0 0 1 14267 3209 9616 9815 17267 17267 -0.12490542954014927 FQKIEHIAF 9 Unmodified _FQKIEHIAF_ 0 0 0 REV__ENSG00000167910|ENST00000301645|CYP7A1 REV__ENSG00000167910|ENST00000301645|CYP7A1 MSMS AL20221201_MKP_PDAC_01 4 378.2122497558594 3 378.209836 1131.60768 NaN NaN NaN NaN NaN NaN NaN 47.28 1 42.199 41.699 42.699 -5.0805 0 0 0 0.51965 1 29329 29329 15.248 0.8431 1 + 14268 22263 9617 9816 17268 17268 0.04714022231269155 FQKLFIGINM 10 Unmodified _FQKLFIGINM_ 0 0 0 REV__ENSG00000137460|ENST00000511601|FHDC1 REV__ENSG00000137460|ENST00000511601|FHDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2277526855469 3 404.22661 1209.658 NaN NaN NaN NaN NaN NaN NaN 15.265 1 15.265 14.765 15.765 0 0 0 0 0.99248 1 7337 7337 0.62683 0.48693 1 + 14269 20239 9618 9817 17269 17269 0.0615580856476754 FQKLLQCETSL 11 Unmodified _FQKLLQCETSL_ 0 0 0 ENST00000418777.5_1_9:16418989-16435690:-|nuORF ENST00000418777.5_1_9:16418989-16435690:-|nuORF ENST00000418777.5_1_9:16418989-16435690:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.232177734375 3 437.232201 1308.67477 1.2723 0.00055628 -1.2966 -0.00056691 -0.024323 -1.0635E-05 437.23157590643825 20.449 0.31438 17.756 17.627 17.941 -2.693 30 16 3 0 0 0 0.58219 1 10865 10865 9.7643 0 1 3091200 14270 13075 9619 9818 17270 17270 0.032782646600708176 FQKNESKETL 10 Unmodified _FQKNESKETL_ 0 0 0 nc|ENSG00000163406|Q16348-2|SLC15A2;ENSG00000163406|ENST00000489711|SLC15A2 nc|ENSG00000163406|Q16348-2|SLC15A2 nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3173828125 2 612.31696 1222.61937 -0.54972 -0.0003366 1.1681 0.00071524 0.61837 0.00037864 612.3177402535932 27.711 0.187 27.711 27.617 27.804 0 18 8 3 0 0 0 0.10424 1 14299 14299 45.7 9.1934 1 3401400 14271 6990 9620 9819 17271 17271 0.01696174463972966 FQKNESKETL 10 Unmodified _FQKNESKETL_ 0 0 0 nc|ENSG00000163406|Q16348-2|SLC15A2;ENSG00000163406|ENST00000489711|SLC15A2 nc|ENSG00000163406|Q16348-2|SLC15A2 nc|ENSG00000163406|Q16348-2|SLC15A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3179321289062 2 612.31696 1222.61937 -0.33361 -0.00020427 0.99268 0.00060783 0.65907 0.00040356 612.31762021822 28.93 0.20061 28.93 28.801 29.002 0 25 9 3 0 0 0 0.13297 1 14949 14949 41.956 10.687 1 5658900 14272 6990 9620 9819 17272 17272 0.01696174463972966 FQKNRVKP 8 Unmodified _FQKNRVKP_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.8036804199219 2 508.803626 1015.5927 0.42959 0.00021858 0.076358 3.8851E-05 0.50595 0.00025743 508.80353887290255 43.899 0.3 39.134 39.019 39.319 -4.7648 33 19 2 0 0 0 0.74163 1 26741 26741 13.508 0.46542 1 11718000 14273 6810 9621 9820 17273 17273 0.08552575153942144 FQKTSVFPQQ 10 Unmodified _FQKTSVFPQQ_ 0 0 0 ENST00000461762.5_1_9:132593180-132593270:-|nuORF ENST00000461762.5_1_9:132593180-132593270:-|nuORF ENST00000461762.5_1_9:132593180-132593270:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.316162109375 2 605.316763 1208.61897 0.75458 0.00045676 -1.3327 -0.00080669 -0.57809 -0.00034993 605.3158087159597 52.483 0.17714 52.424 52.309 52.486 -0.058918 15 8 2 0 0 0 0.42143 1 28450 28450 20.415 4.2654 1 1397500 14274 13665 9622 9821 17274 17274 0.023007995347825272 FQLLLKGAVR 10 Unmodified _FQLLLKGAVR_ 0 0 0 ENSG00000178752|ENST00000546354|ERFE ENSG00000178752|ENST00000546354|ERFE ENSG00000178752|ENST00000546354|ERFE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2457885742188 3 382.244881 1143.71281 0.54062 0.00020665 -1.2891 -0.00049274 -0.74844 -0.00028609 382.2445343940634 58.618 0.52767 58.557 58.373 58.901 -0.060719 36 26 2 0 0 0 0.65023 1 31901 31901 8.4443 0.49891 1 13587000 14275 8772 9623 9822 17275 17275 0.14670563427694105 FQLLQAKFL 9 Unmodified _FQLLQAKFL_ 0 0 0 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 MSMS AL20221201_MKP_PDAC_01 4 554.3318481445312 2 554.331685 1106.64882 NaN NaN NaN NaN NaN NaN NaN 100.41 1 94.232 93.732 94.732 -6.1757 0 0 0 0.7243 1 67133 67133 8.5933 0 1 14276 6266 9624 9823 17276 17276 0.09975783270760985 FQLPHNDRL 9 Unmodified _FQLPHNDRL_ 0 0 0 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5378112792969 3 380.536724 1138.58834 0.87402 0.0003326 1.3706 0.00052157 2.2446 0.00085416 380.5373420738699 27.835 0.63801 24.687 24.384 25.022 -3.1482 74 33 3 0 0 0 0.43463 1 15551 15551 7.1017 0 1 46907000 + 14277 20812 9625 9824 17277 17277 0.024590659403884274 FQLSFLFY 8 Unmodified _FQLSFLFY_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.8031005859375 2 532.776211 1063.53787 0.40575 0.00021617 -2.57 -0.0013692 -2.1643 -0.0011531 532.7747690732466 50.237 0.1862 50.237 50.096 50.282 0 11 8 2 0 0 0 8.7369 1 27698 27698 14.582 0 1 902240 + 14278 20254 9626 9825 17278 17278 0.008641435626714156 FQLSLPLNF 9 Unmodified _FQLSLPLNF_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7;ENST00000469368.1_1_X:74289115-74291374:-|nuORF nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MSMS AL20221201_MKP_PDAC_01 4 360.2023620605469 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 15.876 1 13.319 12.819 13.819 -2.557 0 0 0 0.83049 1 8183 8183 2.2828 0 1 14279 4315 9627 9826 17279 17279 0.05019217482708882 FQLTGDPA 8 Unmodified _FQLTGDPA_ 0 0 0 nc|ENSG00000142512|Q96LC7-8|SIGLEC10;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10;nc|ENSG00000142512|Q96LC7-5|SIGLEC10;ENST00000524527.1_1_19:51920201-51920835:-|nuORF nc|ENSG00000142512|Q96LC7-8|SIGLEC10 nc|ENSG00000142512|Q96LC7-8|SIGLEC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.4140625 1 848.414859 847.407583 0.23567 0.00019995 0.59799 0.00050734 0.83367 0.00070729 848.4154225373015 57.85 0.27439 57.85 57.716 57.99 0 20 11 2 0 0 0 0.61462 1 32261 32261 24.674 0 1 941180 14280 5419 9628 9827 17280 17280 -0.022224524363309683 FQPNQLLI 8 Unmodified _FQPNQLLI_ 0 0 0 REV__ENSG00000165338|ENST00000298068|HECTD2 REV__ENSG00000165338|ENST00000298068|HECTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7755737304688 2 486.779285 971.544017 0.53948 0.00026261 -3.0694 -0.0014941 -2.5299 -0.0012315 486.77538110669764 93.823 0.54947 93.403 93.127 93.677 -0.42044 67 24 4 0 0 0 0.74163 1 51361 51361 13.508 0 1 1317000 + 14281 22005 9629 9828 17281 17281 0.057106617941940385 FQPWPTLLK 9 Unmodified _FQPWPTLLK_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8070678710938 2 565.32386 1128.63317 0.76021 0.00042977 -2.3482 -0.0013275 -1.588 -0.00089773 565.3216901429435 47.947 0.11832 47.909 47.849 47.967 -0.038643 9 5 2 0 0 0 0.16895 1 25869 25869 24.021 2.2739 1 1564700 14282 5406 9630 9829 17282 17282 0.07399496753691892 FQQDQMTQTF 10 Unmodified _FQQDQMTQTF_ 0 0 0 ENST00000471028.1_1_6:31946734-31947331:+|nuORF;ENST00000463823.5_1_6:31940225-31947331:+|nuORF;ENST00000484540.5_1_6:31940369-31947331:+|nuORF;ENST00000473983.5_1_6:31940188-31947331:+|nuORF;ENST00000478486.5_1_6:31940188-31947331:+|nuORF;ENST00000491861.5_1_6:31940339-31948823:+|nuORF;ENSG00000204344|ENST00000685781|STK19;nc|ENSG00000204344|P49842-3|STK19;ENST00000469907.1_1_6:31940369-31948823:+|nuORF;ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF;nc|ENSG00000204344|P49842-2|STK19;nc|ENSG00000204344|P49842-1|STK19 ENST00000471028.1_1_6:31946734-31947331:+|nuORF ENST00000471028.1_1_6:31946734-31947331:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.2780151367188 2 637.27952 1272.54449 0.19513 0.00012436 -1.8749 -0.0011949 -1.6798 -0.0010705 637.2782096274021 56.879 0.27766 56.879 56.786 57.064 0 21 11 3 0 0 0 0.38092 1 31646 31646 22.736 9.6938 1 2577400 14283 10270 9631 9830 17283 17283 -0.08088331338922217 FQQFFHCYCP 10 Unmodified _FQQFFHCYCP_ 0 0 0 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8504333496094 3 440.516055 1318.52633 NaN NaN NaN NaN NaN NaN NaN 27.085 1 27.053 26.553 27.553 -0.031708 0 0 0 0.97302 1 13950 13950 1.7423 0 1 14284 390;3592 9632 9831 17284 17284 -0.12018744794613667 FQQKLWSSVG 10 Unmodified _FQQKLWSSVG_ 0 0 0 ENST00000591226.1_1_19:16212172-16212223:+|nuORF ENST00000591226.1_1_19:16212172-16212223:+|nuORF ENST00000591226.1_1_19:16212172-16212223:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3098754882812 2 590.31148 1178.60841 0.32087 0.00018941 -0.1831 -0.00010808 0.13777 8.1326E-05 590.3112219786275 48.511 0.29075 48.467 48.3 48.591 -0.04369 34 14 3 0 0 0 0.20962 1 26131 26131 32.786 0.4802 1 12608000 14285 15696 9633 9832 17285 17285 0.026248168803022054 FQQLWGYL 8 Unmodified _FQQLWGYL_ 0 0 0 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5175476074219 3 352.183399 1053.52837 NaN NaN NaN NaN NaN NaN NaN 16.52 1 16.52 16.02 17.02 0 0 0 0 0.97444 1 8062 8062 0.45834 0 1 14286 9056 9634 9833 17286 17286 0.003743752771470099 FQQLWGYL 8 Unmodified _FQQLWGYL_ 0 0 0 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1825561523438 3 352.183399 1053.52837 NaN NaN NaN NaN NaN NaN NaN 16.533 1 16.533 16.033 17.033 0 0 0 0 0.97444 1 8070 8070 0.45834 0 1 14287 9056 9634 9833 17287 17287 0.003743752771470099 FQRFLKFP 8 Unmodified _FQRFLKFP_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.561279296875 3 361.543038 1081.60729 -0.12713 -4.5962E-05 -2.6988 -0.00097573 -2.8259 -0.0010217 361.5421655164684 30.118 0.18528 30.148 30.047 30.233 0.030106 10 7 2 0 0 0 8.7369 1 15743 15743 7.2892 3.3448 1 422650 14288 3672 9635 9834 17288 17288 0.06974647302104131 FQRFLKFP 8 Unmodified _FQRFLKFP_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 361.543038 1081.60729 0.5828 0.00021071 -3.5442 -0.0012814 -2.9614 -0.0010707 361.541925967694 30.324 0.18125 30.244 30.178 30.359 -0.080429 0.048106 -0.0001531 NaN 7.2892 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 765140 14289 3672 9635 9834 0.06974647302104131 FQRHEKIHSG 10 Unmodified _FQRHEKIHSG_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5508728027344 3 413.551144 1237.6316 -0.52039 -0.00021521 -1.2729 -0.00052643 -1.7933 -0.00074164 413.5505277169003 20.047 0.11644 20.047 19.989 20.106 0 21 12 2 0 0 0 0.70895 1 10036 10036 1.9064 0.1641 1 664660 14290 8085 9636 9835 17289 17289 0.02229255717656997 FQRYCAEFIKH 11 Unmodified _FQRYCAEFIKH_ 0 0 0 nc|ENSG00000152348|Q9H0Y0-2|ATG10;ENSG00000152348|ENST00000282185|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 nc|ENSG00000152348|Q9H0Y0-2|ATG10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2399597167969 3 481.23969 1440.69724 1.2097 0.00058214 0.41958 0.00020192 1.6292 0.00078405 481.23994551211814 19.896 0.23161 17.24 17.12 17.351 -2.6564 24 13 2 0 0 0 0.72309 1 10536 10536 0.84494 0.21812 1 3031100 14291 6179 9637 9836 17290 17290 -0.005480911516769993 FQRYRRYILYK 11 Unmodified _FQRYRRYILYK_ 0 0 0 REV__ENSG00000100365|ENST00000248899|NCF4 REV__ENSG00000100365|ENST00000248899|NCF4 MSMS AL20221201_MKP_PDAC_01 4 803.256103515625 2 803.454259 1604.89397 NaN NaN NaN NaN NaN NaN NaN 108.96 1 102.79 102.29 103.29 -6.1757 0 0 0 0.9435 1 72796 72796 0 0 1 + 14292 18052 9638 9837 17291 17291 0.11571456733622654 FQSWDTLFG 9 Unmodified _FQSWDTLFG_ 0 0 0 REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF REV__ENST00000546332.1_1_X:15288045-15288583:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.757568359375 2 550.756007 1099.49746 NaN NaN NaN NaN NaN NaN NaN 81.019 1 81.019 80.519 81.519 0 0 0 0 0.84564 1 44976 44976 2.0598 0 1 + 14293 28658 9639 9838 17292 17292 -0.048308228277846865 FQVTKQQSI 9 Unmodified _FQVTKQQSI_ 0 0 0 REV__ENSG00000103047|ENST00000261778|TANGO6 REV__ENSG00000103047|ENST00000261778|TANGO6 MSMS AL20221201_MKP_PDAC_01 4 360.2019958496094 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 16.221 1 13.664 13.164 14.164 -2.557 0 0 0 0.82852 1 8387 8387 4.1895 0.60244 1 + 14294 18280 9640 9839 17293 17293 0.0461712798901317 FQWEEWTF 8 Unmodified _FQWEEWTF_ 0 0 0 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7559204101562 2 586.756007 1171.49746 -0.29316 -0.00017201 -0.16791 -9.8524E-05 -0.46107 -0.00027054 586.7555527781359 31.722 0.21991 31.722 31.64 31.86 0 15 10 2 0 0 0 0.80143 1 16558 16558 5.7604 1.0044 1 607070 + 14295 23948 9641 9840 17294 17294 -0.08142822827790042 FQWEEWTF 8 Unmodified _FQWEEWTF_ 0 0 0 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7567138671875 2 586.756007 1171.49746 -0.76148 -0.00044681 0.22484 0.00013193 -0.53664 -0.00031488 586.7565588577901 32.072 0.24456 32.072 31.92 32.164 0 25 11 3 0 0 0 0.80143 1 16707 16707 5.7604 1.0044 1 820760 + 14296 23948 9641 9840 17295 17295 -0.08142822827790042 FQWISQLRYYW 11 Unmodified _FQWISQLRYYW_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000158486|ENST00000698260|DNAH3 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.6006469726562 3 530.601504 1588.78268 NaN NaN NaN NaN NaN NaN NaN 14.807 1 14.813 14.313 15.313 0.0057774 0 0 0 0.94313 1 7357 7357 0.073264 0.073264 1 14297 3067;6592 9642 9841 17296 17296 0.011843973056784307 FQYPKIVSLYS 11 Unmodified _FQYPKIVSLYS_ 0 0 0 ENST00000342992.10_3_2:179403377-179403708:-|nuORF ENST00000342992.10_3_2:179403377-179403708:-|nuORF ENST00000342992.10_3_2:179403377-179403708:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.9095764160156 3 448.911456 1343.71254 NaN NaN NaN NaN NaN NaN NaN 25.816 1 25.816 25.316 26.316 0 0 0 0 0.93893 1 13249 13249 1.3296 0 1 14298 11989 9643 9842 17297 17297 0.05443098917203315 FQYTIPHD 8 Unmodified _FQYTIPHD_ 0 0 0 ENST00000505973.1_1_2:27805995-27824299:+|nuORF;nc|ENSG00000243943|Q96ME7-3|ZNF512;ENSG00000243943|ENST00000355467|ZNF512 ENST00000505973.1_1_2:27805995-27824299:+|nuORF ENST00000505973.1_1_2:27805995-27824299:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7431335449219 2 510.742899 1019.47125 NaN NaN NaN NaN NaN NaN NaN 41.424 1 41.121 40.621 41.621 -0.30304 0 0 0 0.94494 1 21944 21944 11.64 2.2929 1 14299 10718 9644 9843 17298 17298 -0.03771091999237797 FRAVELPGPL 10 Unmodified _FRAVELPGPL_ 0 0 0 ENST00000483754.1_1_3:160166581-160167565:-|nuORF;ENST00000471396.1_1_3:160156960-160167550:-|nuORF ENST00000483754.1_1_3:160166581-160167565:-|nuORF ENST00000483754.1_1_3:160166581-160167565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.882568359375 3 366.88172 1097.62333 0.97629 0.00035818 1.9261 0.00070666 2.9024 0.0010648 366.88229733671784 46.453 0.18407 46.42 46.307 46.491 -0.033417 23 8 3 0 0 0 0.66569 1 24985 24985 3.5871 0 1 4119200 14300 13871 9645 9844 17299 17299 0.07842308748331561 FRDFRSKL 8 Unmodified _FRDFRSKL_ 0 0 0 REV__nc|ENSG00000036257|Q13618-3|CUL3 REV__nc|ENSG00000036257|Q13618-3|CUL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8692626953125 3 356.869814 1067.58761 NaN NaN NaN NaN NaN NaN NaN 34.274 1 34.301 33.801 34.801 0.027401 0 0 0 0.95973 1 18063 18063 14.838 7.549 1 + 14301 17167 9646 9845 17300 17300 0.05652271291342004 FRDFWEQKF 9 Unmodified _FRDFWEQKF_ 0 0 0 nc|ENSG00000198822|Q14832-2|GRM3;ENSG00000198822|ENST00000361669|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8814392089844 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 51.573 1 51.519 51.019 52.019 -0.053871 0 0 0 0.84564 1 27923 27923 1.0715 0 1 14302 10162 9647 9846 17301 17301 -0.0194378074540964 FRDLHVYL 8 Unmodified _FRDLHVYL_ 0 0 0 ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7894897460938 2 531.790184 1061.56581 1.171 0.00062274 1.9973 0.0010622 3.1683 0.0016849 531.7907741265749 90.86 0.56693 84.684 84.372 84.939 -6.1757 68 33 3 0 0 0 0.60622 1 60102 60102 24.674 1.5255 1 20823000 14303 9338 9648 9847 17302 17302 0.03749466542740265 FRDMVERGN 9 Unmodified _FRDMVERGN_ 0 0 0 REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1 REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1 MSMS AL20221201_MKP_PDAC_01 4 375.1822814941406 3 375.181952 1122.52403 NaN NaN NaN NaN NaN NaN NaN 76.018 1 69.842 69.342 70.342 -6.1757 0 0 0 0.76439 1 49726 49726 4.5289 0 1 + 14304 21322 9649 9848 17303 17303 -0.03233457208057189 FRDYHQELF 9 Unmodified _FRDYHQELF_ 0 0 0 REV__ENSG00000135932|ENST00000258418|CAB39 REV__ENSG00000135932|ENST00000258418|CAB39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8675842285156 3 418.86825 1253.58292 NaN NaN NaN NaN NaN NaN NaN 27.75 1 27.779 27.279 28.279 0.029564 0 0 0 0.84737 1 14430 14430 0.96228 0.26461 1 + 14305 20116 9650 9849 17304 17304 -0.03372657642125887 FREASVCMQLL 11 Unmodified _FREASVCMQLL_ 0 0 0 nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.8849792480469 3 432.886148 1295.63661 1.3022 0.0005637 1.539 0.0006662 2.8412 0.0012299 433.2219608073538 102.62 0.77058 96.449 95.854 96.624 -6.1757 144 98 2 0 0 0 0.30587 1 68952 68952 1.2148 0.51716 1 7280700 14306 9351 9651 9850 17305 17305 0.0006205547376794129 FRECYHMLF 9 Unmodified _FRECYHMLF_ 0 0 0 REV__ENSG00000157399|ENST00000381134|ARSL REV__ENSG00000157399|ENST00000381134|ARSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.8568725585938 3 415.8563 1244.54707 0.41571 0.00017287 0.35991 0.00014967 0.77562 0.00032255 415.85642909709804 58.743 0.19491 58.683 58.546 58.741 -0.060719 14 9 2 0 0 0 0.61256 1 32027 32027 0.26902 0 1 1145400 + 14307 21380 9652 9851 17306 17306 -0.0654215441497854 FREEPCAYQR 10 Unmodified _FREEPCAYQR_ 0 0 0 REV__ENST00000395882.5_1_9:87426762-87426918:+|nuORF REV__ENST00000395882.5_1_9:87426762-87426918:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.5370788574219 3 433.536395 1297.58736 -0.48881 -0.00021192 0.52444 0.00022736 0.035631 1.5447E-05 433.5364228929754 15.639 0.1618 15.639 15.549 15.711 0 54 42 2 0 0 0 0.71413 1 7509 7509 0.56317 0 1 661050 + 14308 26493 9653 9852 17307 17307 -0.04953516490854781 FREKAHKR 8 Unmodified _FREKAHKR_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MSMS AL20221201_MKP_PDAC_01 4 357.8781127929688 3 357.877192 1070.60975 NaN NaN NaN NaN NaN NaN NaN 42.434 1 37.749 37.249 38.249 -4.6846 0 0 0 0.94061 1 25640 25640 9.3831 0 1 14309 4130 9654 9853 17308 17308 0.07726495759743557 FRELGYVLKD 10 Unmodified _FRELGYVLKD_ 0 0 0 ENSG00000154764|ENST00000285018|WNT7A ENSG00000154764|ENST00000285018|WNT7A ENSG00000154764|ENST00000285018|WNT7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3391723632812 2 620.340238 1238.66592 0.45775 0.00028396 -0.11753 -7.2907E-05 0.34022 0.00021105 620.340312783726 22.316 0.33975 19.582 19.394 19.733 -2.7348 43 17 3 0 0 0 0.68209 1 12077 12077 4.897 0 1 6834000 14310 6347 9655 9854 17309 17309 0.05613659085884137 FRELMALYLYH 11 Unmodified _FRELMALYLYH_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.6909790039062 4 364.691787 1454.73804 0.30471 0.00011113 -2.0758 -0.00075703 -1.7711 -0.00064591 364.6910696495524 54.862 0.17802 54.794 54.681 54.859 -0.068737 20 8 3 0 0 0 0.72981 1 29802 29802 1.4551 0.12547 1 2887600 + 14311 22365 9656 9855 17310 17310 0.028862501679896013 FREQDCIL 8 Unmodified _FREQDCIL_ 0 0 0 REV__nc|ENSG00000157827|Q96PY5|FMNL2;REV__ENSG00000184922|ENST00000331495|FMNL1;REV__nc|ENSG00000161791|Q8IVF7|FMNL3 REV__ENSG00000184922|ENST00000331495|FMNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2510986328125 2 512.250034 1022.48552 0.8441 0.00043239 -0.85264 -0.00043676 -0.0085405 -4.3749E-06 512.2496886395911 51.217 0.2163 51.217 51.085 51.302 0 17 9 2 0 0 0 0.67686 1 28257 28257 19.257 2.3147 1 3330900 + 14312 23452;21402;29737 9657 9856 17311 17311 -0.02482762842601005 FREQDCIL 8 Unmodified _FREQDCIL_ 0 0 0 REV__nc|ENSG00000157827|Q96PY5|FMNL2;REV__ENSG00000184922|ENST00000331495|FMNL1;REV__nc|ENSG00000161791|Q8IVF7|FMNL3 REV__ENSG00000184922|ENST00000331495|FMNL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.250034 1022.48552 0.8441 0.00043239 -0.85264 -0.00043676 -0.0085405 -4.3749E-06 512.2496886395911 51.217 0.2163 51.217 51.085 51.302 0 0 0 NaN 19.257 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3330900 + 14313 23452;21402;29737 9657 9856 -0.02482762842601005 FREQIWFI 8 Unmodified _FREQIWFI_ 0 0 0 REV__nc|ENSG00000176055|Q68D91-2|MBLAC2 REV__nc|ENSG00000176055|Q68D91-2|MBLAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2059631347656 3 380.206315 1137.59712 1.6092 0.00061182 -0.24497 -9.3139E-05 1.3642 0.00051868 380.20624109205465 55.495 0.42117 49.574 49.3 49.721 -5.9211 42 25 2 0 0 0 0.78849 1 35365 35365 6.7232 1.8262 1 16064000 + 14314 22908 9658 9857 17312 17312 0.033820395768543676 FREYGGKLLCI 11 Unmodified _FREYGGKLLCI_ 0 0 0 REV__ENSG00000120875|ENST00000240100|DUSP4 REV__ENSG00000120875|ENST00000240100|DUSP4 MSMS AL20221201_MKP_PDAC_01 4 433.5679321289062 3 433.569036 1297.68528 NaN NaN NaN NaN NaN NaN NaN 16.81 1 14.253 13.753 14.753 -2.557 0 0 0 0.93933 1 8737 8737 1.2148 0 1 + 14315 19267 9659 9858 17313 17313 0.04834292105192617 FRFDKPFMKLM 11 Unmodified _FRFDKPFMKLM_ 0 0 0 REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2552490234375 3 487.257804 1458.75158 1.0871 0.0005297 -1.9606 -0.00095531 -0.87348 -0.00042561 487.2564870485234 91.698 0.22495 85.523 85.387 85.612 -6.1757 21 12 2 0 0 0 0.68427 1 60600 60600 2.6312 0.19645 1 12928000 + 14316 22505 9660 9859 17314 17314 0.040557846755291393 FRFIFYIFYFL 11 Unmodified _FRFIFYIFYFL_ 0 0 0 REV__ENST00000590478.1_1_17:33569582-33569933:-|nuORF REV__ENST00000590478.1_1_17:33569582-33569933:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 788.4253540039062 2 788.423574 1574.83259 NaN NaN NaN NaN NaN NaN NaN 101.63 1 101.58 101.08 102.08 -0.045853 0 0 0 0.94301 1 56462 56462 0.35063 0.35063 1 + 14317 29150 9661 9860 17315 17315 0.0681713198162015 FRFLPLKLF 9 Unmodified _FRFLPLKLF_ 0 0 0 ENST00000578190.5_1_17:62501363-62501429:-|nuORF ENST00000578190.5_1_17:62501363-62501429:-|nuORF ENST00000578190.5_1_17:62501363-62501429:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8684692382812 2 590.865695 1179.71684 1.5807 0.00093401 1.8333 0.0010832 3.414 0.0020172 590.8668277651516 100.86 0.14425 94.682 94.635 94.78 -6.1757 21 8 3 0 0 0 0.54444 1 67555 67555 4.756 2.4533 1 197140000 14318 15540 9662 9861 17316 17316 0.13416652921409877 FRGPGPQL 8 Unmodified _FRGPGPQL_ 0 0 0 ENSG00000100604|ENST00000216492|CHGA ENSG00000100604|ENST00000216492|CHGA ENSG00000100604|ENST00000216492|CHGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.2435913085938 2 436.24287 870.471186 -0.29247 -0.00012759 1.3823 0.00060302 1.0898 0.00047543 436.24331963109154 37.094 0.23059 36.845 36.688 36.919 -0.2497 16 9 2 0 0 0 0.63229 1 19477 19477 23.148 10.617 1 1177300 14319 1853 9663 9862 17317 17317 0.03076952791423082 FRGPGPQL 8 Unmodified _FRGPGPQL_ 0 0 0 ENSG00000100604|ENST00000216492|CHGA ENSG00000100604|ENST00000216492|CHGA ENSG00000100604|ENST00000216492|CHGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2431030273438 2 436.24287 870.471186 -0.069574 -3.0351E-05 0.40775 0.00017788 0.33818 0.00014753 436.2433087499591 36.716 0.19664 36.737 36.661 36.858 0.021545 13 8 3 0 0 0 0.6895 1 19483 19483 18.135 5.6034 1 1429200 14320 1853 9663 9862 17318 17318 0.03076952791423082 FRGRAAWA 8 Unmodified _FRGRAAWA_ 0 0 0 nc|ENSG00000183011|Q9BRA0-2|NAA38 nc|ENSG00000183011|Q9BRA0-2|NAA38 nc|ENSG00000183011|Q9BRA0-2|NAA38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7548522949219 2 467.753936 933.493319 0.95946 0.00044879 -0.55181 -0.00025811 0.40766 0.00019068 467.75368241763454 19.495 0.29756 16.838 16.689 16.987 -2.6564 66 28 3 0 0 0 0.6895 1 10392 10392 18.135 0 1 19111000 14321 16442 9664 9863 17319 17319 0.023911772598239622 FRGTGALIF 9 Unmodified _FRGTGALIF_ 0 0 0 ENSG00000025039|ENST00000369415|RRAGD ENSG00000025039|ENST00000369415|RRAGD ENSG00000025039|ENST00000369415|RRAGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.27978515625 2 491.279452 980.544351 1.0548 0.00051822 -1.1424 -0.00056125 -0.087599 -4.3036E-05 491.27926664577905 65.546 0.25546 65.546 65.408 65.664 1.5259E-05 24 11 3 0 0 0 0.08691 1 35965 35965 36.127 5.9022 1 4726600 14322 553 9665 9864 17320 17320 0.05330081514057383 FRGTLMLVL 9 Unmodified _FRGTLMLVL_ 0 0 0 REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3110961914062 2 525.312438 1048.61032 0.11033 5.7956E-05 0.28708 0.00015081 0.39741 0.00020876 525.3124826767316 76.408 0.31226 76.456 76.299 76.611 0.047943 21 12 2 0 0 0 0.042911 1 42151 42151 48.346 3.9388 1 4356900 + 14323 20025 9666 9865 17321 17321 0.08796154364586073 FRGTLMLVL 9 Unmodified _FRGTLMLVL_ 0 0 0 REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3134155273438 2 525.312438 1048.61032 1.2721 0.00066824 -0.39677 -0.00020843 0.87532 0.00045981 525.3123309088328 96.328 0.34425 90.152 89.96 90.305 -6.1757 58 20 4 0 0 0 0.042911 2 63754 63754;63890 48.346 3.9388 1 93123000 + 14324 20025 9666 9865 17322;17323 17322 0.08796154364586073 FRGTLMLVL 9 Unmodified _FRGTLMLVL_ 0 0 0 REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF REV__ENST00000525431.1_1_11:125476222-125478225:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 525.312438 1048.61032 0.11033 5.7956E-05 0.28708 0.00015081 0.39741 0.00020876 525.3124826767316 76.408 0.31226 76.456 76.299 76.611 0.047943 -0.0334 -0.00063193 NaN 48.346 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4356900 + 14325 20025 9666 9865 0.08796154364586073 FRHFSINIHK 10 Unmodified _FRHFSINIHK_ 0 0 0 REV__ENSG00000173451|ENST00000308086|THAP2 REV__ENSG00000173451|ENST00000308086|THAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5487670898438 3 433.575401 1297.70437 0.10034 4.3507E-05 1.141 0.00049472 1.2414 0.00053823 433.57618907229573 30.171 0.23041 30.201 30.07 30.3 0.030106 21 9 3 0 0 0 0.23898 1 15768 15768 4.7159 0.87001 1 1177500 + 14326 22731 9667 9866 17324 17324 0.06743009511069431 FRHKLRKKT 9 Unmodified _FRHKLRKKT_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2587890625 3 405.259524 1212.75674 NaN NaN NaN NaN NaN NaN NaN 95.808 1 95.44 94.94 95.94 -0.36814 0 0 0 0.86031 1 52329 52329 0.23584 0.11298 1 + 14327 22046 9668 9867 17325 17325 0.15887592644685355 FRHLMPVF 8 Unmodified _FRHLMPVF_ 0 0 0 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7835083007812 2 523.783847 1045.55314 NaN NaN NaN NaN NaN NaN NaN 89.76 1 89.258 88.758 89.758 -0.50171 0 0 0 0.97444 1 49071 49071 2.5775 0 1 + 14328 21723 9669 9868 17326 17326 0.03218731878860126 FRHRAISDTW 10 Unmodified _FRHRAISDTW_ 0 0 0 nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2233581542969 3 430.223028 1287.64725 0.086043 3.7018E-05 0.48376 0.00020812 0.5698 0.00024514 430.22320166803235 29.839 0.26146 29.869 29.734 29.995 0.030106 16 9 2 0 0 0 0.62068 1 15602 15602 5.7834 3.3486 1 10321000 14329 268 9670 9869 17327 17327 0.014935422346979976 FRHYFIEPS 9 Unmodified _FRHYFIEPS_ 0 0 0 ENSG00000143797|ENST00000305997|MBOAT2 ENSG00000143797|ENST00000305997|MBOAT2 ENSG00000143797|ENST00000305997|MBOAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2972412109375 2 598.298373 1194.58219 -0.43395 -0.00025963 -1.2798 -0.0007657 -1.7137 -0.0010253 598.2979791097371 19.532 0.15833 19.561 19.489 19.648 0.028357 38 16 3 0 0 0 0.58145 1 9829 9829 1.8442 0 1 788540 14330 5552 9671 9870 17328 17328 -0.007314522911428867 FRHYSRAYF 9 Unmodified _FRHYSRAYF_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8009643554688 2 623.809439 1245.60433 0.58684 0.00036607 -0.50997 -0.00031813 0.076861 4.7947E-05 623.8089972712775 72.891 0.42063 72.415 72.209 72.63 -0.47588 55 18 4 0 0 0 0.58466 1 39949 39949 2.3027 0 1 4232900 14331 1803 9672 9871 17329 17329 -0.008652278227373245 FRKAFLKIL 9 Unmodified _FRKAFLKIL_ 0 0 0 nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3;nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2 nc|ENSG00000151577|P35462-3|DRD3 nc|ENSG00000151577|P35462-3|DRD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2488403320312 3 379.249855 1134.72774 NaN NaN NaN NaN NaN NaN NaN 69.93 1 69.451 68.951 69.951 -0.47903 0 0 0 0.86031 1 38234 38234 0.23584 0.23584 1 14332 6001 9673 9872 17330 17330 0.1657605529569537 FRKDRAYL 8 Unmodified _FRKDRAYL_ 0 0 0 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.8701171875 3 356.869814 1067.58761 -0.2931 -0.0001046 -0.26983 -9.6295E-05 -0.56294 -0.0002009 356.86982206435096 34.511 0.54318 34.32 33.998 34.541 -0.19131 31 23 2 0 0 0 0.80143 1 18097 18097 11.64 4.3511 1 3649800 + 14333 19049 9674 9873 17331 17331 0.05652271291319266 FRKDRAYL 8 Unmodified _FRKDRAYL_ 0 0 0 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8711547851562 3 356.869814 1067.58761 1.0749 0.00038359 0.42542 0.00015182 1.5003 0.00053541 356.8700548080409 38.621 0.52987 34.253 33.9 34.43 -4.3689 66 33 3 0 0 0 0.75262 1 22826 22826 9.3831 2.7597 1 24516000 + 14334 19049 9674 9873 17332 17332 0.05652271291319266 FRKDRAYL 8 Unmodified _FRKDRAYL_ 0 0 0 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 356.869814 1067.58761 -0.2931 -0.0001046 -0.26983 -9.6295E-05 -0.56294 -0.0002009 356.86982206435096 34.511 0.54318 34.32 33.998 34.541 -0.19131 0.033724 -0.00057253 NaN 9.3831 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3649800 + 14335 19049 9674 9873 0.05652271291319266 FRKEFTKL 8 Unmodified _FRKEFTKL_ 0 0 0 ENSG00000148834|ENST00000369713|GSTO1;nc|ENSG00000148834|P78417-3|GSTO1 ENSG00000148834|ENST00000369713|GSTO1 ENSG00000148834|ENST00000369713|GSTO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8785705566406 3 356.878198 1067.61277 0.056238 2.007E-05 3.4598 0.0012347 3.5161 0.0012548 356.87943317544045 34.207 0.18444 34.236 34.103 34.287 0.028934 12 8 2 0 0 0 0.76266 1 18030 18030 11.64 0 1 2887300 14336 5966 9675 9874 17333 17333 0.08166326093896714 FRKGQEVEL 9 Unmodified _FRKGQEVEL_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2054748535156 3 369.204862 1104.59276 0.12367 4.5659E-05 1.331 0.00049141 1.4547 0.00053707 369.20530624219384 28.298 0.23816 28.327 28.163 28.401 0.029564 16 9 3 0 0 0 0.49272 1 14760 14760 8.1555 4.8359 1 1920600 + 14337 17660 9676 9875 17334 17334 0.04464530363270569 FRKLVVALKI 10 Unmodified _FRKLVVALKI_ 0 0 0 ENST00000508000.5_1_5:79783667-79783739:-|nuORF ENST00000508000.5_1_5:79783667-79783739:-|nuORF ENST00000508000.5_1_5:79783667-79783739:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2720336914062 3 396.27266 1185.79615 NaN NaN NaN NaN NaN NaN NaN 103.97 1 103.92 103.42 104.42 -0.048737 0 0 0 1.0047 1 57731 57731 0.15932 0.036457 1 14338 14552 9677 9876 17335 17335 0.21068299875537377 FRKPYNVESY 10 Unmodified _FRKPYNVESY_ 0 0 0 ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7537841796875 3 434.887422 1301.64044 1.2372 0.00053803 -0.6486 -0.00028207 0.58857 0.00025596 434.8866676615164 37.835 0.21617 33.466 33.381 33.597 -4.3689 23 12 3 0 0 0 0.23634 1 22266 22266 3.5871 0 1 8868600 14339 531 9678 9877 17336 17336 0.0016818456347209576 FRKWAGNE 8 Unmodified _FRKWAGNE_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000525164.5_1_1:1248165-1249114:-|nuORF;ENST00000470030.6_1_1:1248876-1250311:-|nuORF;ENST00000461514.6_1_1:1248044-1249114:-|nuORF;ENST00000478641.5_1_1:1248876-1249468:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11;ENST00000478641.5_1_1:1248876-1249468:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2566528320312 2 504.256508 1006.49846 -0.8293 -0.00041818 0.26632 0.00013429 -0.56298 -0.00028389 504.25660375980135 36.727 0.30832 36.477 36.358 36.667 -0.2497 23 13 3 0 0 0 0.64853 1 19289 19289 21.747 5.8995 1 7249200 14340 3985;14023 9679 9878 17337 17337 -0.004525636681933065 FRLDKTLPL 9 Unmodified _FRLDKTLPL_ 0 0 0 REV__nc|ENSG00000144452|Q86UK0-2|ABCA12 REV__nc|ENSG00000144452|Q86UK0-2|ABCA12 MSMS AL20221201_MKP_PDAC_01 4 368.226318359375 3 368.225486 1101.65463 NaN NaN NaN NaN NaN NaN NaN 90.735 1 84.56 84.06 85.06 -6.1757 0 0 0 0.79814 1 59949 59949 6.1918 1.2948 1 + 14341 20710 9680 9879 17338 17338 0.10786881782428281 FRLGFYFSFF 10 Unmodified _FRLGFYFSFF_ 0 0 0 REV__ENSG00000215262|ENST00000399881|KCNU1 REV__ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2269287109375 3 444.225486 1329.65463 0.91639 0.00040708 1.1936 0.00053024 2.11 0.00093733 444.2262295482202 47.542 0.58928 47.503 47.28 47.869 -0.038643 101 27 5 0 0 0 0.69626 1 25773 25773 3.3196 0.24738 1 30475000 + 14342 24339 9681 9880 17339 17339 0.0029888178239616536 FRLILGAH 8 Unmodified _FRLILGAH_ 0 0 0 REV__ENST00000571846.5_2_17:7761168-7761255:+|nuORF REV__ENST00000571846.5_2_17:7761168-7761255:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7827453613281 2 463.782162 925.549771 0.20761 9.6287E-05 1.369 0.0006349 1.5766 0.00073119 463.782742464475 34.227 0.25231 34.255 34.163 34.416 0.027401 29 11 3 0 0 0 0.80676 1 18029 18029 2.5775 0 1 10544000 + 14343 28982 9682 9881 17340 17340 0.08401805096514181 FRLMRIFRVL 10 Unmodified _FRLMRIFRVL_ 0 0 0 ENSG00000124134|ENST00000537075|KCNS1 ENSG00000124134|ENST00000537075|KCNS1 ENSG00000124134|ENST00000537075|KCNS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9447937011719 3 450.944548 1349.81182 NaN NaN NaN NaN NaN NaN NaN 13.897 1 13.905 13.405 14.405 0.0073986 0 0 0 1.0061 1 6869 6869 0 0 1 14344 3747 9683 9882 17341 17341 0.15090263120964664 FRLPSANVY 9 Unmodified _FRLPSANVY_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7880859375 2 533.787641 1065.56073 0.31208 0.00016658 0.50427 0.00026917 0.81635 0.00043576 533.7864517186024 54.997 0.33448 54.929 54.783 55.117 -0.068737 51 16 4 0 0 0 0.07087 1 29852 29852 39.95 15.276 1 12366000 14345 10814 9684 9883 17342 17342 0.030571626801247476 FRLQVLVLYT 10 Unmodified _FRLQVLVLYT_ 0 0 0 ENST00000526148.5_2_11:10829311-10829500:-|nuORF ENST00000526148.5_2_11:10829311-10829500:-|nuORF ENST00000526148.5_2_11:10829311-10829500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.9203186035156 3 417.920174 1250.73869 0.07987 3.3379E-05 1.1108 0.00046423 1.1907 0.0004976 417.920599055027 39.451 0.30646 39.451 39.224 39.53 0 20 14 2 0 0 0 0.7191 1 21077 21077 0.77653 0.50751 1 2965400 14346 14810 9685 9884 17343 17343 0.123354128793153 FRLQVLVLYT 10 Unmodified _FRLQVLVLYT_ 0 0 0 ENST00000526148.5_2_11:10829311-10829500:-|nuORF ENST00000526148.5_2_11:10829311-10829500:-|nuORF ENST00000526148.5_2_11:10829311-10829500:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 417.920174 1250.73869 0.095506 3.9914E-05 1.0727 0.00044828 1.1682 0.0004882 417.92049659998133 39.893 0.23745 39.596 39.412 39.649 -0.29716 0.13569 -0.00024292 NaN 0.77653 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1236600 14347 14810 9685 9884 0.123354128793153 FRLYLESRANM 11 Unmodified _FRLYLESRANM_ 0 0 0 REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF REV__ENST00000526700.5_1_16:70530266-70542451:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2423400878906 3 467.243211 1398.7078 0.38413 0.00017948 -2.7635 -0.0012912 -2.3794 -0.0011118 467.24190331248707 63.04 0.24968 62.554 62.46 62.709 -0.48617 15 11 2 0 0 0 0.71728 1 34395 34395 2.6312 0.54727 1 2657600 + 14348 18281 9686 9885 17344 17344 0.024398915027859402 FRMLCGEWI 9 Unmodified _FRMLCGEWI_ 0 0 0 SCN9A|p.V923M|1|0.06|ENSG00000169432|chr2:166277090-166277090|C/T|missense_variant SCN9A|p.V923M|1|0.06|ENSG00000169432|chr2:166277090-166277090|C/T|missense_variant SCN9A|p.V923M|1|0.06|ENSG00000169432|chr2:166277090-166277090|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7759399414062 2 577.777905 1153.54126 NaN NaN NaN NaN NaN NaN NaN 52.225 1 52.225 51.725 52.725 0 0 0 0 0.6306 1 28895 28895 11.64 2.8949 1 14349 30157 9687 9886 17345 17345 -0.029372529266311176 FRMLLFEM 8 Unmodified _FRMLLFEM_ 0 0 0 REV__ENSG00000177174|ENST00000317861|OR14C36 REV__ENSG00000177174|ENST00000317861|OR14C36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8548583984375 3 362.854008 1085.54019 1.1189 0.00040599 0.93312 0.00033859 2.052 0.00074457 362.8543445104314 38.499 0.50966 34.13 33.87 34.379 -4.3689 102 32 4 0 0 0 0.76266 1 22666 22666 8.7454 0 1 139040000 + 14350 22967 9688 9887 17346 17346 0.0008453270447716932 FRNKIKCF 8 Unmodified _FRNKIKCF_ 0 0 0 ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A ENSG00000205108|ENST00000378788|FAM205A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5328979492188 3 352.532145 1054.57461 NaN NaN NaN NaN NaN NaN NaN 18.563 1 18.569 18.069 19.069 0.0060463 0 0 0 0.97444 1 9412 9412 0.40072 0.1317 1 14351 10348 9689 9888 17347 17347 0.049501169075711005 FRPDDYEF 8 Unmodified _FRPDDYEF_ 0 0 0 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.2566528320312 2 544.737814 1087.46108 0.52589 0.00028647 -0.29548 -0.00016096 0.23041 0.00012551 544.7371904659657 38.389 0.22219 34.02 33.87 34.092 -4.3689 14 13 2 0 0 0 8.7369 1 22548 22548 2.5775 0 1 4387400 + 14352 18024 9690 9889 17348 17348 -0.07915699724480874 FRPKRRVV 8 Unmodified _FRPKRRVV_ 0 0 0 REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3403930664062 2 529.34071 1056.66687 NaN NaN NaN NaN NaN NaN NaN 102.82 1 102.71 102.21 103.21 -0.10458 0 0 0 0.97444 1 56090 56090 0.69038 0 1 + 14353 25809 9691 9890 17349 17349 0.14079963036124354 FRPKRRVV 8 Unmodified _FRPKRRVV_ 0 0 0 REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF REV__ENST00000355451.7_1_7:44424886-44425042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3382568359375 2 529.34071 1056.66687 -0.60879 -0.00032226 -1.0965 -0.00058042 -1.7053 -0.00090268 529.3397784626083 102.8 0.34943 102.75 102.6 102.95 -0.047928 28 12 3 0 0 0 0.80992 1 57083 57083 0.69038 0.16561 1 2412800 + 14354 25809 9691 9890 17350 17350 0.14079963036124354 FRPLYTHEY 9 Unmodified _FRPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2044067382812 3 409.204862 1224.59276 -0.37944 -0.00015527 0.36463 0.00014921 -0.01481 -6.0603E-06 409.2048093732623 35.489 0.226 35.267 35.107 35.333 -0.2224 17 9 2 0 0 0 0.018301 1 18552 18552 59.368 44.963 1 7356600 14355 399 9692 9891 17351 17351 -0.010554696367080396 FRPLYTHEY 9 Unmodified _FRPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2049560546875 3 409.204862 1224.59276 -0.25113 -0.00010276 0.4496 0.00018398 0.19847 8.1215E-05 409.53954906709833 35.216 0.18688 35.243 35.122 35.309 0.027401 13 8 2 0 0 0 0.039985 1 18584 18584 53.404 43.253 1 2827200 14356 399 9692 9891 17352 17352 -0.010554696367080396 FRPLYTHEY 9 Unmodified _FRPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.303466796875 2 613.303655 1224.59276 0.78994 0.00048448 -0.86241 -0.00052892 -0.072466 -4.4443E-05 613.3029806486395 39.429 0.24601 34.978 34.796 35.042 -4.4509 23 14 2 0 0 0 0.0082475 1 23393 23393 92.653 59.868 1 7671700 14357 399 9692 9891 17353 17353 -0.010554696367080396 FRPLYTHEY 9 Unmodified _FRPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.0359802246094 3 409.204862 1224.59276 0.90886 0.00037191 0.097935 4.0076E-05 1.0068 0.00041199 409.20489359547184 39.404 0.81838 34.953 34.704 35.522 -4.4509 88 51 3 0 0 0 0.14796 1 23351 23351 26.021 22.434 1 31330000 14358 399 9692 9891 17354 17354 -0.010554696367080396 FRPLYTHEY 9 Unmodified _FRPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 613.303655 1224.59276 -0.29271 -0.00017952 -0.32411 -0.00019878 -0.61682 -0.0003783 613.3037459438948 35.47 0.092289 35.248 35.176 35.268 -0.2224 0.13499 0.00054789 NaN 92.653 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1374200 14359 399 9692 9891 -0.010554696367080396 FRPPTRAEL 9 Unmodified _FRPPTRAEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8734741210938 3 362.873336 1085.59818 -0.28444 -0.00010322 0.15421 5.596E-05 -0.13023 -4.7257E-05 362.8734242316003 34.542 0.62052 34.351 33.944 34.564 -0.19131 74 26 4 0 0 0 0.015688 2 17947 17947;18057 70.929 48.271 1 23999000 14360 16188 9693 9892 17355;17356 17355 0.05880253945747427 FRPPTRAEL 9 Unmodified _FRPPTRAEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8735046386719 3 362.873336 1085.59818 0.066726 2.4213E-05 0.3561 0.00012922 0.42282 0.00015343 362.8734322426728 34.291 0.86092 34.318 33.767 34.628 0.027401 95 39 3 0 0 0 0.0099157 3 18109 17895;18003;18109 83.278 52.574 1 22056000 14361 16188 9693 9892 17357;17358;17359 17359 0.05880253945747427 FRPPTRAEL 9 Unmodified _FRPPTRAEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8739929199219 3 362.873336 1085.59818 1.0832 0.00039306 0.50069 0.00018169 1.5839 0.00057475 362.8735192844454 38.54 0.79514 34.171 33.686 34.481 -4.3689 155 49 5 0 0 0 0.0081 4 22893 22493;22619;22756;22893 87.123 48.509 1 206650000 14362 16188 9693 9892 17360;17361;17362;17363 17363 0.05880253945747427 FRPSVRPVPL 10 Unmodified _FRPSVRPVPL_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9050598144531 3 389.904747 1166.69241 0.29115 0.00011352 0.62074 0.00024203 0.91189 0.00035555 389.9049114273214 52.059 0.21226 52 51.875 52.087 -0.058918 18 9 3 0 0 0 0.69848 1 28214 28214 3.0723 0.33707 1 2157700 14363 2874 9694 9893 17364 17364 0.11573392767900259 FRQIIAVVL 9 Unmodified _FRQIIAVVL_ 0 0 0 ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2 ENST00000491113.1_1_20:35234354-35236222:+|nuORF ENST00000491113.1_1_20:35234354-35236222:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8402099609375 2 529.839677 1057.6648 0.11678 6.1872E-05 0.6293 0.00033343 0.74607 0.0003953 529.8399702277051 76.997 0.4024 77.047 76.869 77.272 0.05011 41 16 3 0 0 0 0.019303 2 42546 42439;42546 64.236 41.088 1 14625000 14364 1911 9695 9894 17365;17366 17366 0.13827489507639257 FRQIIAVVL 9 Unmodified _FRQIIAVVL_ 0 0 0 ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF;nc|ENSG00000118707|Q9GZN2-2|TGIF2 ENST00000491113.1_1_20:35234354-35236222:+|nuORF ENST00000491113.1_1_20:35234354-35236222:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8395385742188 2 529.839677 1057.6648 1.3085 0.00069329 -0.53595 -0.00028397 0.77253 0.00040932 529.8394634575546 97.729 0.20985 91.553 91.441 91.651 -6.1757 29 14 3 0 0 0 0.012148 1 64745 64745 74.423 44.198 1 70681000 14365 1911 9695 9894 17367 17367 0.13827489507639257 FRQLCRIPST 10 Unmodified _FRQLCRIPST_ 0 0 0 ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18 ENST00000449739.6_1_4:73923833-73935428:-|nuORF ENST00000449739.6_1_4:73923833-73935428:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.83056640625 2 610.832057 1219.64956 0.20676 0.0001263 -0.30542 -0.00018656 -0.098659 -6.0264E-05 610.8318270586751 37.978 0.27106 37.995 37.859 38.13 0.01704 28 12 3 0 0 0 0.42143 1 20140 20140 20.415 3.4722 1 5047600 14366 7033 9696 9895 17368 17368 0.048522546481535755 FRQQEPFFYLA 11 Unmodified _FRQQEPFFYLA_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 723.3638305664062 2 723.364244 1444.71394 0.40446 0.00029257 1.1637 0.00084176 1.5681 0.0011343 723.3648322363679 67.647 0.2925 67.165 67.031 67.323 -0.48218 29 12 3 0 0 0 0.71341 1 36950 36950 2.9952 0 1 2318000 + 14367 19755 9697 9896 17369 17369 0.009367330059831147 FRQTHTALL 9 Unmodified _FRQTHTALL_ 0 0 0 REV__nc|ENSG00000159588|Q96LX7-3|CCDC17 REV__nc|ENSG00000159588|Q96LX7-3|CCDC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8060913085938 2 543.806365 1085.59818 0.14723 8.0067E-05 -0.75158 -0.00040871 -0.60435 -0.00032865 543.8064338699263 34.233 0.50541 34.26 33.95 34.456 0.027405 40 23 3 0 0 0 0.34999 1 17995 17995 14.838 0 1 5219100 + 14368 21488 9698 9897 17370 17370 0.05880253945747427 FRQWFDKI 8 Unmodified _FRQWFDKI_ 0 0 0 ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3024291992188 2 570.303458 1138.59236 -0.17563 -0.00010016 -2.1951 -0.0012519 -2.3708 -0.0013521 570.3021296640426 25.403 0.24634 25.403 25.26 25.507 0 20 11 2 0 0 0 0.80068 1 13005 13005 4.756 0.42677 1 1400900 14369 9139 9699 9898 17371 17371 0.028611554340841394 FRQYYQTAY 9 Unmodified _FRQYYQTAY_ 0 0 0 REV__ENST00000555487.1_1_14:23847503-23847728:+|nuORF REV__ENST00000555487.1_1_14:23847503-23847728:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.6997680664062 2 620.293288 1238.57202 0.66483 0.00041239 -4.2819 -0.002656 -3.617 -0.0022436 620.2905645641167 49.368 0.11987 49.368 49.296 49.416 0 10 5 2 0 0 0 0.21473 1 27117 27117 4.3292 2.6766 1 1897200 + 14370 22081 9700 9899 17372 17372 -0.03772060016353862 FRRCWSTG 8 Unmodified _FRRCWSTG_ 0 0 0 REV__ENSG00000181744|ENST00000315691|DIPK2A REV__ENSG00000181744|ENST00000315691|DIPK2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7423706054688 2 506.742711 1011.47087 0.10808 5.4771E-05 -0.75863 -0.00038443 -0.65055 -0.00032966 506.7424275571041 87.733 0.18767 87.228 87.12 87.308 -0.50423 11 8 2 0 0 0 0.80992 1 47984 47984 0.69038 0.088878 1 380370 + 14371 23220 9701 9900 17373 17373 -0.034407902000680224 FRRFLLQC 8 Unmodified _FRRFLLQC_ 0 0 0 REV__ENSG00000171659|ENST00000378142|GPR34 REV__ENSG00000171659|ENST00000378142|GPR34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.8698425292969 3 361.535778 1081.5855 NaN NaN NaN NaN NaN NaN NaN 16.628 1 16.629 16.129 17.129 0.0010548 0 0 0 0.97444 1 8210 8210 0.40072 0 1 + 14372 22587 9702 9901 17374 17374 0.04797519281873974 FRRSKEVF 8 Unmodified _FRRSKEVF_ 0 0 0 REV__nc|ENSG00000155755|Q96Q45-4|TMEM237 REV__nc|ENSG00000155755|Q96Q45-4|TMEM237 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.1796569824219 3 356.869814 1067.58761 1.0749 0.00038359 0.42542 0.00015182 1.5003 0.00053541 356.8700548080409 38.621 0.52987 34.253 33.9 34.43 -4.3689 66 33 3 0 0 0 8.7369 1 22657 22657 10.074 0 1 24516000 + 14373 21286 9703 9902 17375 17375 0.05652271291342004 FRRSPGSL 8 Unmodified _FRRSPGSL_ 0 0 0 REV__nc|ENSG00000174672|Q8IWQ3-3|BRSK2 REV__nc|ENSG00000174672|Q8IWQ3-3|BRSK2 MSMS AL20221201_MKP_PDAC_01 4 460.2624206542969 2 460.259051 918.503549 NaN NaN NaN NaN NaN NaN NaN 17.326 1 14.739 14.239 15.239 -2.5866 0 0 0 0.97444 1 9050 9050 4.756 0 1 + 14374 22807 9704 9903 17376 17376 0.041037401944208796 FRSATTSGAPG 11 Unmodified _FRSATTSGAPG_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2617797851562 2 526.261988 1050.50942 NaN NaN NaN NaN NaN NaN NaN 21.39 1 21.404 20.904 21.904 0.013796 0 0 0 0.71476 1 10950 10950 16.149 1.3108 1 14375 9669 9705 9904 17377 17377 -0.013812060845793894 FRSEPALYF 9 Unmodified _FRSEPALYF_ 0 0 0 ENST00000477345.1_1_9:140086566-140087185:-|nuORF;nc|ENSG00000176058|Q4KMQ1-2|TPRN;nc|ENSG00000176058|Q4KMQ1-4|TPRN;nc|ENSG00000176058|Q4KMQ1-3|TPRN;ENSG00000176058|ENST00000409012|TPRN ENST00000477345.1_1_9:140086566-140087185:-|nuORF ENST00000477345.1_1_9:140086566-140087185:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2898559570312 2 565.287474 1128.5604 0.83335 0.00047108 1.8746 0.0010597 2.7079 0.0015307 565.2887692402687 62.17 0.15388 61.683 61.55 61.704 -0.48764 12 6 3 0 0 0 0.34134 1 33865 33865 15.248 3.0078 1 4209900 14376 8561 9706 9905 17378 17378 0.001257429602674165 FRSKTWTY 8 Unmodified _FRSKTWTY_ 0 0 0 REV__ENSG00000153002|ENST00000282957|CPB1 REV__ENSG00000153002|ENST00000282957|CPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7780151367188 2 544.779816 1087.54508 0.2161 0.00011772 -0.87026 -0.0004741 -0.65416 -0.00035637 544.7793275266587 96.774 1.1019 96.774 95.96 97.062 0 131 72 3 0 0 0 0.80676 1 53110 53110 2.5775 0.27475 1 3894700 + 14377 21146 9707 9906 17379 17379 0.00480876163078392 FRSPLQGAP 9 Unmodified _FRSPLQGAP_ 0 0 0 REV__ENSG00000146278|ENST00000336032|PNRC1 REV__ENSG00000146278|ENST00000336032|PNRC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.2673034667969 2 486.766709 971.518865 1.414 0.00068829 -1.9876 -0.00096752 -0.57364 -0.00027923 486.76653664655436 33.844 0.30221 29.859 29.627 29.929 -3.9853 18 16 2 0 0 0 0.18482 1 19372 19372 8.7454 1.4562 1 3754700 + 14378 20824 9708 9907 17380 17380 0.03196606991616591 FRSWAVQTF 9 Unmodified _FRSWAVQTF_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2936401367188 2 571.293091 1140.57163 0.26773 0.00015295 0.27561 0.00015745 0.54334 0.00031041 571.2933124020021 59.462 0.3018 59.409 59.293 59.595 -0.053062 24 15 2 0 0 0 0.069655 1 32405 32405 40.239 9.6027 1 5243300 14379 357 9709 9908 17381 17381 0.0069656505440889305 FRTGECYLLF 10 Unmodified _FRTGECYLLF_ 0 0 0 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8055419921875 2 624.807716 1247.60088 0.42153 0.00026338 -3.3063 -0.0020658 -2.8847 -0.0018024 624.8052400329387 75.074 0.57323 75.12 74.899 75.472 0.045967 39 27 2 0 0 0 0.36277 1 41482 41482 21.537 0 1 5112700 + 14380 29734 9710 9909 17382 17382 -0.01301658711622622 FRTLWRVKR 9 Unmodified _FRTLWRVKR_ 0 0 0 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.3836059570312 2 631.385648 1260.75674 NaN NaN NaN NaN NaN NaN NaN 103.77 1 103.72 103.22 104.22 -0.048737 0 0 0 0.85798 1 57626 57626 0.52476 0.066424 1 14381 8947 9711 9910 17383 17383 0.13679592644689365 FRTPHVLVL 9 Unmodified _FRTPHVLVL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2222595214844 3 361.222076 1080.6444 -0.065272 -2.3578E-05 1.0794 0.00038992 1.0142 0.00036634 361.221988680252 56.478 0.19196 56.409 56.266 56.458 -0.068737 13 9 2 0 0 0 0.52844 1 30699 30699 3.5871 1.0886 1 3276400 14382 1399 9712 9911 17384 17384 0.1073031884784541 FRTPHVLVL 9 Unmodified _FRTPHVLVL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.2030639648438 3 361.222076 1080.6444 1.6261 0.00058739 0.008041 2.9046E-06 1.6342 0.00059029 361.5563829682773 91.534 0.32459 85.359 85.165 85.49 -6.1757 31 17 2 0 0 0 0.20883 1 60564 60564 5.4027 3.8104 1 9845300 14383 1399 9712 9911 17385 17385 0.1073031884784541 FRVDYILSV 9 Unmodified _FRVDYILSV_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3113403320312 2 556.310949 1110.60735 1.3426 0.00074692 -0.56535 -0.00031451 0.77729 0.00043241 556.310395877291 96.38 0.23305 90.205 90.056 90.289 -6.1757 23 13 2 0 0 0 0.16019 1 63845 63845 34.932 7.3033 1 21358000 14384 16063;14003 9713 9912 17386 17386 0.05646602511410492 FRVGARQYQLH 11 Unmodified _FRVGARQYQLH_ 0 0 0 REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.8710327148438 2 687.873102 1373.73165 NaN NaN NaN NaN NaN NaN NaN 76.984 1 76.984 76.484 77.484 0 0 0 0 0.94184 1 42797 42797 1.1933 0.79263 1 + 14385 16984 9714 9913 17387 17387 0.05973493051465084 FRVKYETEL 9 Unmodified _FRVKYETEL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5491333007812 3 395.548518 1183.62372 0.65021 0.00025719 0.21176 8.3762E-05 0.86197 0.00034095 395.54867528288855 40.521 0.1887 40.218 40.148 40.337 -0.30304 10 8 2 0 0 0 0.51371 1 21458 21458 6.6304 2.754 1 1687500 14386 2759;12975 9715 9914 17388 17388 0.03925683677539382 FRVKYETEL 9 Unmodified _FRVKYETEL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000424695.1_1_1:238654935-238655424:+|nuORF;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 395.548518 1183.62372 -0.083734 -3.3121E-05 -0.13421 -5.3085E-05 -0.21794 -8.6206E-05 395.5487085562731 40.142 0.18686 40.142 40.049 40.236 0 -0.037926 -0.00026754 NaN 6.6304 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1298700 14387 2759;12975 9715 9914 0.03925683677539382 FRVLEPLH 8 Unmodified _FRVLEPLH_ 0 0 0 ENST00000423485.5_1_17:38573136-38574110:-|nuORF ENST00000423485.5_1_17:38573136-38574110:-|nuORF ENST00000423485.5_1_17:38573136-38574110:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.8169555664062 2 505.792727 1009.5709 1.0819 0.00054722 0.59544 0.00030117 1.6773 0.00084838 505.79316017281553 91.788 0.60169 85.613 85.252 85.853 -6.1757 79 33 3 0 0 0 8.7369 1 60839 60839 15.847 1.2655 1 37822000 14388 13134 9716 9915 17389 17389 0.06649770405374511 FRVPTANVS 9 Unmodified _FRVPTANVS_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7735595703125 2 495.771991 989.529429 0.48092 0.00023843 1.9833 0.00098326 2.4642 0.0012217 495.77296076045553 39.681 0.20598 39.686 39.564 39.77 0.0050583 12 9 2 0 0 0 0.40476 1 21147 21147 12.241 7.4846 1 786630 14389 2801 9717 9916 17390 17390 0.034245896460333825 FRVTLVSAI 9 Unmodified _FRVTLVSAI_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000450321.2_2_5:89969873-89972607:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3088073730469 2 503.30821 1004.60187 0.61197 0.00030801 0.5605 0.00028211 1.1725 0.00059011 503.30852401608973 68.582 0.35115 68.607 68.397 68.748 0.025154 36 16 3 0 0 0 0.11784 1 37626 37626 31.268 3.6395 1 11633000 14390 7163 9718 9917 17391 17391 0.09974923719619255 FRWCWVIYYNL 11 Unmodified _FRWCWVIYYNL_ 0 0 0 ENST00000535011.6_1_7:128410370-128410973:+|nuORF ENST00000535011.6_1_7:128410370-128410973:+|nuORF ENST00000535011.6_1_7:128410370-128410973:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 781.8843383789062 2 781.88429 1561.75403 NaN NaN NaN NaN NaN NaN NaN 80.825 1 80.825 80.325 81.325 0 0 0 0 0.9435 1 44873 44873 0 0 1 14391 14964 9719 9918 17392 17392 -0.004380435951134132 FRWKEGQG 8 Unmodified _FRWKEGQG_ 0 0 0 ENST00000264560.11_1_19:746795-747209:+|nuORF ENST00000264560.11_1_19:746795-747209:+|nuORF ENST00000264560.11_1_19:746795-747209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2567138671875 2 504.256508 1006.49846 -0.14725 -7.4252E-05 -0.62518 -0.00031525 -0.77243 -0.0003895 504.2561992856127 36.428 0.24615 36.449 36.268 36.515 0.021545 20 10 3 0 0 0 0.6895 1 19284 19284 18.135 1.1927 1 3030300 14392 11317 9720 9919 17393 17393 -0.004525636681819378 FRWLFVWLCAK 11 Unmodified _FRWLFVWLCAK_ 0 0 0 REV__ENSG00000164751|ENST00000357039|PEX2 REV__ENSG00000164751|ENST00000357039|PEX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.603759765625 3 490.268921 1467.78493 0.60856 0.00029836 1.7828 0.00087407 2.3914 0.0011724 490.2696725904649 18.187 0.36135 15.565 15.423 15.784 -2.6215 46 28 2 0 0 0 0.73114 1 9533 9533 1.3296 0.21989 1 2806300 + 14393 21946 9721 9920 17394 17394 0.069751545097688 FRWMRLRIRRM 11 Unmodified _FRWMRLRIRRM_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.9635009765625 2 810.963748 1619.91294 NaN NaN NaN NaN NaN NaN NaN 97.865 1 97.865 97.365 98.365 0 0 0 0 0.9435 1 54064 54064 0 0 1 14394 6165 9722 9921 17395 17395 0.1277839155197853 FRWVNGLGII 10 Unmodified _FRWVNGLGII_ 0 0 0 REV__nc|ENSG00000132164|P48066-2|SLC6A11 REV__nc|ENSG00000132164|P48066-2|SLC6A11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.7611999511719 3 392.229231 1173.66586 -0.37404 -0.00014671 3.7793 0.0014824 3.4053 0.0013357 392.23061268258596 53.535 0.11794 53.472 53.381 53.499 -0.063423 6 5 2 0 0 0 0.23946 1 29000 29000 1.7423 0 1 2197900 + 14395 19832 9723 9922 17396 17396 0.08597703876580454 FRWYRDEQFFF 11 Unmodified _FRWYRDEQFFF_ 0 0 0 REV__ENSG00000102996|ENST00000219271|MMP15 REV__ENSG00000102996|ENST00000219271|MMP15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.1347045898438 2 820.885875 1639.7572 NaN NaN NaN NaN NaN NaN NaN 16.196 1 16.201 15.701 16.701 0.0050564 0 0 0 0.9435 1 8110 8110 0 0 1 + 14396 18273 9724 9923 17397 17397 -0.037090772168085095 FRYARLWWVQK 11 Unmodified _FRYARLWWVQK_ 0 0 0 ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 777.4332885742188 2 776.93042 1551.84629 -0.006301 -4.8954E-06 -0.05721 -4.4448E-05 -0.063511 -4.9343E-05 776.9304191412324 86.529 0.40756 86.529 86.317 86.725 0 38 18 3 0 0 0 0.73115 1 47874 47874 1.3295 1.3295 1 1365700 14397 12575 9725 9924 17398 17398 0.0924380253338768 FRYARLWWVQK 11 Unmodified _FRYARLWWVQK_ 0 0 0 ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.4320068359375 2 776.93042 1551.84629 1.5824 0.0012294 -0.90468 -0.00070288 0.67773 0.00052655 776.9295598130609 92.264 3.6289 92.294 91.005 94.634 0.030197 320 139 3 0 0 0 0.71341 10 50830 50830;50930;51034;51139;51244;51340;51443;51541;51642;51938 2.9952 2.9952 1 24871000 14398 12575 9725 9924 17399;17400;17401;17402;17403;17404;17405;17406;17407;17408 17399 0.0924380253338768 FRYARLWWVQK 11 Unmodified _FRYARLWWVQK_ 0 0 0 ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF ENST00000379644.8_2_8:43055194-43055551:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.4375 2 776.93042 1551.84629 -0.42391 -0.00032935 -0.27498 -0.00021364 -0.69888 -0.00054298 776.9299646673268 108.89 2.3527 108.84 107.59 109.94 -0.047615 208 77 3 0 0 0 0.71341 5 59741 59741;60191;60322;60591;60837 2.9952 2.9952 1 1238800 14399 12575 9725 9924 17409;17410;17411;17412;17413 17409 0.0924380253338768 FRYIAALTL 9 Unmodified _FRYIAALTL_ 0 0 0 REV__ENSG00000186790|ENST00000335071|FOXE3 REV__ENSG00000186790|ENST00000335071|FOXE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.31982421875 2 534.316035 1066.61752 1.6517 0.00088251 4.41 0.0023563 6.0617 0.0032388 534.318379540248 100.86 0.15712 94.68 94.623 94.78 -6.1757 11 9 2 0 0 0 0.2143 1 67564 67564 21.747 3.6117 1 29622000 + 14400 23594 9726 9925 17414 17414 0.08687210236666942 FRYRKVREI 9 Unmodified _FRYRKVREI_ 0 0 0 nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;nc|ENSG00000158161|Q99504-2|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9196472167969 3 422.919168 1265.73567 0.94525 0.00039977 -0.2479 -0.00010484 0.69735 0.00029492 422.91914055465276 42.216 0.34525 37.531 37.364 37.709 -4.6846 42 21 3 0 0 0 0.29507 1 25404 25404 17.443 3.0373 1 20724000 14401 6569 9727 9926 17415 17415 0.11343582545168829 FRYRKVREI 9 Unmodified _FRYRKVREI_ 0 0 0 nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;nc|ENSG00000158161|Q99504-2|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9196472167969 3 422.919168 1265.73567 0.3602 0.00015234 0.59544 0.00025182 0.95564 0.00040416 422.91945777513786 85.192 0.88033 79.016 78.582 79.462 -6.1757 142 53 3 0 0 0 0.20507 1 56291 56291 22.658 3.2961 1 94376000 14402 6569 9727 9926 17416 17416 0.11343582545168829 FRYSFYML 8 Unmodified _FRYSFYML_ 0 0 0 nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 MSMS AL20221201_MKP_PDAC_01 4 376.184814453125 3 376.184522 1125.53174 NaN NaN NaN NaN NaN NaN NaN 78.647 1 72.472 71.972 72.972 -6.1757 0 0 0 0.95201 1 51493 51493 7.2892 0 1 14403 1132 9728 9927 17417 17417 -0.026006979405110542 FRYSTFCKH 9 Unmodified _FRYSTFCKH_ 0 0 0 REV__ENSG00000173124|ENST00000394005|ACSM6 REV__ENSG00000173124|ENST00000394005|ACSM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1999816894531 3 396.858809 1187.5546 -0.53146 -0.00021091 -0.022405 -8.8916E-06 -0.55386 -0.00021981 396.8588679451 17.942 0.14357 17.956 17.873 18.016 0.013865 47 14 4 0 0 0 0.61381 1 8928 8928 0.23584 0 1 13984000 + 14404 22704 9729 9928 17418 17418 -0.031676788230470265 FSAGFKRTS 9 Unmodified _FSAGFKRTS_ 0 0 0 ENSG00000024526|ENST00000456315|DEPDC1 ENSG00000024526|ENST00000456315|DEPDC1 ENSG00000024526|ENST00000456315|DEPDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7639770507812 2 500.764166 999.513779 0.75415 0.00037765 0.33627 0.00016839 1.0904 0.00054604 500.76391242430685 18.137 0.21014 15.515 15.372 15.582 -2.6215 29 17 2 0 0 0 0.078314 1 9512 9512 38.176 0.20157 1 2065800 14405 552 9730 9929 17419 17419 0.01400303128991709 FSAQVLGSQR 10 Unmodified _FSAQVLGSQR_ 0 0 0 ENST00000263856.8_1_2:86732655-86732907:-|nuORF ENST00000263856.8_1_2:86732655-86732907:-|nuORF ENST00000263856.8_1_2:86732655-86732907:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7152099609375 2 546.793455 1091.57236 0.21034 0.00011501 1.4868 0.000813 1.6972 0.00092801 546.7941374438197 99.854 0.062859 93.678 93.652 93.715 -6.1757 5 4 2 0 0 0 0.56348 1 66607 66607 13.042 0.51092 1 12541000 14406 11298 9731 9930 17420 17420 0.030233597034794002 FSARDAWRRY 10 Unmodified _FSARDAWRRY_ 0 0 0 REV__ENST00000609552.1_1_4:83295512-83295800:+|nuORF REV__ENST00000609552.1_1_4:83295512-83295800:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3421020507812 2 664.336353 1326.65815 4.6604 0.0030961 -1.0345 -0.00068724 3.6259 0.0024088 664.3361405672592 99.151 0.26888 99.122 98.92 99.189 -0.028282 23 9 4 0 0 0 0.60623 1 55048 55048 10.824 1.4408 1 9176400 + 14407 29333 9732 9931 17421 17421 0.007889446089848207 FSASRDRMV 9 Unmodified _FSASRDRMV_ 0 0 0 ENSG00000148225|ENST00000374193|WDR31;nc|ENSG00000148225|Q8NA23-2|WDR31;ENST00000461942.5_1_9:116083780-116093329:-|nuORF ENSG00000148225|ENST00000374193|WDR31 ENSG00000148225|ENST00000374193|WDR31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7675170898438 2 534.766383 1067.51821 0.90307 0.00048293 1.1372 0.00060814 2.0403 0.0010911 534.7667707939304 63.801 0.29031 63.791 63.61 63.9 -0.010529 30 13 3 0 0 0 0.12424 1 34891 34891 30.637 2.1497 1 8512800 14408 5907 9733 9932 17422 17422 -0.012845557197579183 FSATAGSF 8 Unmodified _FSATAGSF_ 0 0 0 REV__ENSG00000204510|ENST00000697200|PRAMEF7 REV__ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1844482421875 2 394.184686 786.354819 0.0052574 2.0724E-06 0.61589 0.00024278 0.62115 0.00024485 394.18479510238916 52.585 0.32642 52.585 52.402 52.728 0 21 14 2 0 0 0 0.40035 1 29112 29112 44.407 12.29 1 1975100 + 14409 23263 9734 9933 17423 17423 -0.046904104991313034 FSATAGSF 8 Unmodified _FSATAGSF_ 0 0 0 REV__ENSG00000204510|ENST00000697200|PRAMEF7 REV__ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1844482421875 2 394.184686 786.354819 0.40269 0.00015874 -0.33891 -0.00013359 0.063787 2.5144E-05 394.1844166371 53.23 0.27526 52.779 52.647 52.922 -0.45173 18 13 2 0 0 0 0.48669 1 28812 28812 36.044 11.37 1 1585000 + 14410 23263 9734 9933 17424 17424 -0.046904104991313034 FSATAGSF 8 Unmodified _FSATAGSF_ 0 0 0 REV__ENSG00000204510|ENST00000697200|PRAMEF7 REV__ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.184686 786.354819 0.0052574 2.0724E-06 0.61589 0.00024278 0.62115 0.00024485 394.18479510238916 52.585 0.32642 52.585 52.402 52.728 0 -0.096584 0.00044462 NaN 44.407 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1975100 + 14411 23263 9734 9933 -0.046904104991313034 FSATAGSF 8 Unmodified _FSATAGSF_ 0 0 0 REV__ENSG00000204510|ENST00000697200|PRAMEF7 REV__ENSG00000204510|ENST00000697200|PRAMEF7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.184686 786.354819 0.40269 0.00015874 -0.33891 -0.00013359 0.063787 2.5144E-05 394.1844166371 53.23 0.27526 52.779 52.647 52.922 -0.45173 0.096584 -0.00030812 NaN 44.407 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1585000 + 14412 23263 9734 9933 -0.046904104991313034 FSAWCAFSF 9 Unmodified _FSAWCAFSF_ 0 0 0 ENST00000370205.5_1_1:95538432-95538471:-|nuORF ENST00000370205.5_1_1:95538432-95538471:-|nuORF ENST00000370205.5_1_1:95538432-95538471:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2308349609375 2 533.228571 1064.44259 0.41138 0.00021936 3.0827 0.0016438 3.4941 0.0018632 533.2311688411372 88.306 0.37601 87.801 87.602 87.978 -0.50423 35 16 3 0 0 0 0.55144 1 48323 48323 4.3292 1.44 1 1409700 14413 12323 9735 9934 17425 17425 -0.08705532900034996 FSCCVKCLL 9 Unmodified _FSCCVKCLL_ 0 0 0 ENST00000389484.7_1_2:142888649-142888757:-|nuORF ENST00000389484.7_1_2:142888649-142888757:-|nuORF ENST00000389484.7_1_2:142888649-142888757:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7169494628906 2 508.242309 1014.47007 0.064083 3.257E-05 -0.25052 -0.00012732 -0.18643 -9.4753E-05 508.24170415712723 70.845 0.28167 70.845 70.737 71.019 0 51 35 2 0 0 0 0.43463 1 39424 39424 10.824 0 1 3082100 14414 12644 9736 9935 17426 17426 -0.03659088955657808 FSCKRRSE 8 Unmodified _FSCKRRSE_ 0 0 0 REV__ENST00000591822.5_1_16:5122062-5122182:+|nuORF REV__ENST00000591822.5_1_16:5122062-5122182:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7544555664062 2 506.753276 1011.492 0.94658 0.00047968 0.9177 0.00046505 1.8643 0.00094473 506.75353224187336 88.773 0.69512 82.598 82.206 82.901 -6.1757 110 38 4 0 0 0 0.70102 1 58566 58566 17.113 0.1706 1 79067000 + 14415 29167 9737 9936 17427 17427 -0.013288248912203926 FSCNYLTVH 9 Unmodified _FSCNYLTVH_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2515869140625 2 542.250034 1082.48552 0.64058 0.00034736 2.6944 0.001461 3.335 0.0018084 542.2514283080656 50.213 0.37943 49.821 49.532 49.911 -0.3923 34 18 2 0 0 0 0.5029 1 26936 26936 7.2892 0.56607 1 2909600 + 14416 23848 9738 9937 17428 17428 -0.05242762842613047 FSCSECGRGF 10 Unmodified _FSCSECGRGF_ 0 0 0 nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.7382202148438 3 364.81276 1091.41645 0.025716 9.3815E-06 3.2074 0.0011701 3.2331 0.0011795 364.81461636525285 64.573 0.33788 64.573 64.407 64.745 0 30 16 2 0 0 0 0.23862 1 36067 36067 1.9064 0 1 3772000 14417 9944 9739 9938 17429 17429 -0.12560170133815518 FSCSTCNSKL 10 Unmodified _FSCSTCNSKL_ 0 0 0 nc|ENSG00000072163|Q7Z4I7-3|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENST00000469300.6_1_2:128396858-128397856:-|nuORF;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;ENST00000484252.5_1_2:128396858-128398238:-|nuORF nc|ENSG00000072163|Q7Z4I7-3|LIMS2 nc|ENSG00000072163|Q7Z4I7-3|LIMS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.740234375 2 545.238809 1088.46307 -0.60508 -0.00032991 -1.964 -0.0010708 -2.569 -0.0014007 545.2375932308784 28.115 0.27706 28.115 28.034 28.311 0 29 15 3 0 0 0 0.67033 1 14588 14588 6.2058 0.44535 1 1631000 14418 1074 9740 9939 17430 17430 -0.07762730302533782 FSCWPFLY 8 Unmodified _FSCWPFLY_ 0 0 0 ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7408447265625 2 531.741314 1061.46807 0.34062 0.00018112 -0.39216 -0.00020853 -0.051541 -2.7407E-05 531.7411470455611 63.05 0.33166 63.05 62.963 63.295 0 24 13 2 0 0 0 0.74163 1 35212 35212 13.508 0.97634 1 1872600 14419 12129 9741 9940 17431 17431 -0.06020058377589521 FSDDGWLGGL 10 Unmodified _FSDDGWLGGL_ 0 0 0 ENST00000586846.1_1_17:74553872-74554101:+|nuORF ENST00000586846.1_1_17:74553872-74554101:+|nuORF ENST00000586846.1_1_17:74553872-74554101:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7459716796875 2 533.745639 1065.47673 0.3486 0.00018606 1.2474 0.00066581 1.596 0.00085187 533.7456220786805 58.984 0.36341 58.984 58.829 59.192 0 42 15 4 0 0 0 0.33553 1 32876 32876 25.399 6.1423 1 19621000 14420 15627 9742 9941 17432 17432 -0.053394132074117806 FSDDWLCHF 9 Unmodified _FSDDWLCHF_ 0 0 0 REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7437744140625 2 585.239667 1168.46478 0.10483 6.1348E-05 0.54545 0.00031922 0.65027 0.00038056 585.2399606049145 90.358 0.395 90.358 90.138 90.533 0 77 23 5 0 0 0 0.54444 1 49982 49982 4.756 0 1 4344900 + 14421 17927 9743 9942 17433 17433 -0.11271353222264224 FSDDWLCHF 9 Unmodified _FSDDWLCHF_ 0 0 0 REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF REV__ENST00000476625.5_1_X:48660534-48664079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7435302734375 2 585.239667 1168.46478 0.33576 0.0001965 -0.55839 -0.00032679 -0.22263 -0.00013029 585.2394728999263 90.867 0.52428 90.372 90.139 90.663 -0.49458 198 34 7 0 0 0 0.48152 1 49658 49658 8.5933 1.304 1 53250000 + 14422 17927 9743 9942 17434 17434 -0.11271353222264224 FSDETTESGDH 11 Unmodified _FSDETTESGDH_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8268127441406 3 408.826557 1223.45784 -0.62492 -0.00025549 0.4071 0.00016643 -0.21783 -8.9054E-05 408.82695635103556 34.86 0.32159 34.86 34.695 35.016 0 61 16 5 0 0 0 0.30985 2 18454 18346;18454 16.275 11.227 1 42085000 + 14423 23319 9744 9943 17435;17436 17436 -0.14495039359781003 FSDETTESGDH 11 Unmodified _FSDETTESGDH_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.736572265625 2 612.736197 1223.45784 -0.37484 -0.00022968 -0.013079 -8.0137E-06 -0.38792 -0.00023769 612.7365243037558 34.857 0.24369 34.857 34.714 34.958 0 39 12 4 0 0 0 0.12183 1 18366 18366 39.95 19.535 1 17337000 + 14424 23319 9744 9943 17437 17437 -0.14495039359781003 FSDHHTMCY 9 Unmodified _FSDHHTMCY_ 0 0 0 ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7168579101562 2 570.715501 1139.41645 1.0621 0.00060618 1.1526 0.0006578 2.2147 0.001264 570.7160023590307 99.48 0.25806 93.304 93.174 93.432 -6.1757 31 16 2 0 0 0 0.54213 1 66325 66325 7.9102 3.1541 1 117890000 14425 2742 9745 9944 17438 17438 -0.1476817013381151 FSDKINHPRPK 11 Unmodified _FSDKINHPRPK_ 0 0 0 REV__ENSG00000140993|ENST00000396862|TIGD7 REV__ENSG00000140993|ENST00000396862|TIGD7 MSMS AL20221201_MKP_PDAC_01 4 669.8703002929688 2 669.867486 1337.72042 NaN NaN NaN NaN NaN NaN NaN 101.86 1 95.689 95.189 96.189 -6.1757 0 0 0 0.89305 1 68376 68376 7.609 0.88579 1 + 14426 20510 9746 9945 17439 17439 0.06506670957310234 FSDPPSPSVL 10 Unmodified _FSDPPSPSVL_ 0 0 0 nc|ENSG00000146278|Q12796-2|PNRC1;ENSG00000146278|ENST00000336032|PNRC1 nc|ENSG00000146278|Q12796-2|PNRC1 nc|ENSG00000146278|Q12796-2|PNRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2660522460938 2 523.263665 1044.51278 1.0211 0.00053429 -1.9925 -0.0010426 -0.97141 -0.0005083 523.263120369278 34.869 0.55338 30.774 30.438 30.991 -4.0951 76 32 3 0 0 0 0.1028 1 20025 20025 46.021 16.18 1 19748000 14427 5769 9747 9946 17440 17440 -0.0076995603058094275 FSDQSTSAPY 10 Unmodified _FSDQSTSAPY_ 0 0 0 REV__ENSG00000177272|ENST00000369769|KCNA3 REV__ENSG00000177272|ENST00000369769|KCNA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2160034179688 2 551.738011 1101.46147 -0.21619 -0.00011928 2.7234 0.0015026 2.5072 0.0013833 551.7394237787821 33.773 0.1965 33.773 33.667 33.864 0 22 9 3 0 0 0 0.23489 1 17779 17779 8.7454 1.4562 1 3958700 + 14428 22974 9748 9947 17441 17441 -0.08520324795290435 FSDVDSPYY 9 Unmodified _FSDVDSPYY_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.731201171875 2 546.729655 1091.44476 1.3776 0.00075317 0.47158 0.00025783 1.8492 0.001011 546.729922929175 79.382 0.53698 73.206 72.911 73.448 -6.1757 75 30 3 0 0 0 0.14602 1 52019 52019 28.487 1.6032 1 78255000 14429 8021 9749 9948 17442 17442 -0.09730825681231181 FSDVLSPARHL 11 Unmodified _FSDVLSPARHL_ 0 0 0 ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENST00000467699.5_1_17:7604102-7605361:+|nuORF ENST00000498311.5_1_17:7604102-7606801:+|nuORF ENST00000498311.5_1_17:7604102-7606801:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 621.3388671875 2 621.335487 1240.65642 NaN NaN NaN NaN NaN NaN NaN 84.705 1 78.53 78.03 79.03 -6.1757 0 0 0 0.48869 1 55746 55746 24.991 6.8446 1 14430 14420 9750 9949 17443 17443 0.04571890800366418 FSDYQNYL 8 Unmodified _FSDYQNYL_ 0 0 0 nc|ENSG00000172575|O95267-4|RASGRP1;nc|ENSG00000172575|O95267-5|RASGRP1;nc|ENSG00000172575|O95267-3|RASGRP1;nc|ENSG00000172575|O95267-2|RASGRP1;ENSG00000172575|ENST00000310803|RASGRP1 nc|ENSG00000172575|O95267-4|RASGRP1 nc|ENSG00000172575|O95267-4|RASGRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2306518554688 2 525.232364 1048.45018 0.41577 0.00021837 0.60685 0.00031873 1.0226 0.00053711 525.2323361278267 61.66 0.52911 61.66 61.514 62.044 0 53 23 3 0 0 0 0.78849 1 34346 34346 9.3474 0.75416 1 3236900 14431 8234 9751 9950 17444 17444 -0.07211102098767697 FSECWWDH 8 Unmodified _FSECWWDH_ 0 0 0 ENST00000526878.5_1_11:460175-490579:+|nuORF;ENSG00000174915|ENST00000308020|PTDSS2 ENST00000526878.5_1_11:460175-490579:+|nuORF ENST00000526878.5_1_11:460175-490579:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2115478515625 2 555.210909 1108.40727 0.61573 0.00034186 -0.13704 -7.6088E-05 0.47869 0.00026577 555.2108129125539 55.357 0.27297 54.879 54.733 55.005 -0.47798 39 12 4 0 0 0 0.80676 1 29952 29952 2.5775 0.27475 1 4706900 14432 8467 9752 9951 17445 17445 -0.14260195427846156 FSEDLHSSLYF 11 Unmodified _FSEDLHSSLYF_ 0 0 0 nc|ENSG00000171587|O60469-2|DSCAM;ENSG00000171587|ENST00000400454|DSCAM nc|ENSG00000171587|O60469-2|DSCAM nc|ENSG00000171587|O60469-2|DSCAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8086547851562 2 672.808968 1343.60338 NaN NaN NaN NaN NaN NaN NaN 81.535 1 81.041 80.541 81.541 -0.49419 0 0 0 0.94144 1 44647 44647 1.4819 0 1 14433 8117 9753 9952 17446 17446 -0.05467531772956136 FSEFLDVGR 9 Unmodified _FSEFLDVGR_ 0 0 0 REV__ENST00000462869.1_1_3:113795697-113801401:+|nuORF REV__ENST00000462869.1_1_3:113795697-113801401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2703857421875 2 535.269281 1068.52401 0.27944 0.00014958 0.3758 0.00020116 0.65525 0.00035073 535.2695145912301 79.246 0.4446 79.246 78.974 79.418 0 26 19 2 0 0 0 0.59218 1 44078 44078 1.8442 1.8442 1 695160 + 14434 21075 9754 9953 17447 17447 -0.007511339364327796 FSEGCHSCIY 10 Unmodified _FSEGCHSCIY_ 0 0 0 REV__ENSG00000102870|ENST00000262525|ZNF629 REV__ENSG00000102870|ENST00000262525|ZNF629 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.5610046386719 3 382.484532 1144.43177 1.5576 0.00059577 1.6158 0.00061803 3.1735 0.0012138 382.4850381246544 41.032 0.20152 36.424 36.327 36.528 -4.6079 18 12 2 0 0 0 0.23986 1 24647 24647 0.69767 0.55777 1 5238900 + 14435 18260 9755 9954 17448 17448 -0.1346730333659707 FSEGELLLI 9 Unmodified _FSEGELLLI_ 0 0 0 REV__ENSG00000039319|ENST00000505560|ZFYVE16 REV__ENSG00000039319|ENST00000505560|ZFYVE16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7851257324219 2 510.784233 1019.55391 0.30957 0.00015812 0.83194 0.00042494 1.1415 0.00058307 510.7847370652921 78.413 0.39504 78.413 78.222 78.617 0 34 18 2 0 0 0 0.39863 1 43624 43624 12.532 0 1 1192100 + 14436 17186 9756 9955 17449 17449 0.04491805008922256 FSEGELLLI 9 Unmodified _FSEGELLLI_ 0 0 0 REV__ENSG00000039319|ENST00000505560|ZFYVE16 REV__ENSG00000039319|ENST00000505560|ZFYVE16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7846069335938 2 510.784233 1019.55391 0.016992 8.679E-06 0.87169 0.00044524 0.88868 0.00045392 510.7845513519968 78.833 0.5743 78.347 78.111 78.686 -0.48596 75 23 4 0 0 0 0.2001 1 43108 43108 23.148 0 1 11686000 + 14437 17186 9756 9955 17450 17450 0.04491805008922256 FSEGELLLI 9 Unmodified _FSEGELLLI_ 0 0 0 REV__ENSG00000039319|ENST00000505560|ZFYVE16 REV__ENSG00000039319|ENST00000505560|ZFYVE16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7843933105469 2 510.784233 1019.55391 0.41707 0.00021303 0.75803 0.00038719 1.1751 0.00060022 510.7846822934726 82.516 0.73894 82.02 81.443 82.182 -0.4952 44 29 2 0 0 0 0.2001 2 45056 45056;45153 23.148 0 1 497630 + 14438 17186 9756 9955 17451;17452 17451 0.04491805008922256 FSELVRCDRQ 10 Unmodified _FSELVRCDRQ_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2076416015625 3 418.208278 1251.60301 NaN NaN NaN NaN NaN NaN NaN 17.958 1 17.958 17.458 18.458 0 0 0 0 0.99248 1 8894 8894 0.62683 0.21856 1 + 14439 18555 9757 9956 17453 17453 -0.012732299737990616 FSELVRCDRQ 10 Unmodified _FSELVRCDRQ_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2071228027344 3 418.208278 1251.60301 NaN NaN NaN NaN NaN NaN NaN 18.25 1 18.264 17.764 18.764 0.013865 0 0 0 0.97302 1 9137 9137 1.7423 0.52744 1 + 14440 18555 9757 9956 17454 17454 -0.012732299737990616 FSELVRCDRQ 10 Unmodified _FSELVRCDRQ_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.206787109375 3 418.208278 1251.60301 NaN NaN NaN NaN NaN NaN NaN 19.161 1 19.184 18.684 19.684 0.023106 0 0 0 0.97302 1 9648 9648 1.7423 0.52744 1 + 14441 18555 9757 9956 17455 17455 -0.012732299737990616 FSEPLYPVF 9 Unmodified _FSEPLYPVF_ 0 0 0 ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 ENSG00000111801|ENST00000244519|BTN3A3 ENSG00000111801|ENST00000244519|BTN3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.778564453125 2 549.778951 1097.54335 0.43094 0.00023692 -1.4661 -0.00080601 -1.0351 -0.00056909 549.7781856773164 90.837 0.32007 90.343 90.208 90.528 -0.49458 47 25 2 0 0 0 0.28047 1 49740 49740 18.135 7.9516 1 2633600 14442 2829 9758 9957 17456 17456 -0.0015217764553199231 FSESAAGF 8 Unmodified _FSESAAGF_ 0 0 0 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.1824645996094 2 408.182143 814.349734 -0.3735 -0.00015246 1.1782 0.0004809 0.80465 0.00032845 408.1825099908239 23.357 0.34265 23.357 23.126 23.469 0 27 16 2 0 0 0 0.74163 1 11853 11853 13.508 0 1 692720 + 14443 20815 9759 9958 17457 17457 -0.06486714361756185 FSESAAGF 8 Unmodified _FSESAAGF_ 0 0 0 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7321166992188 2 408.182143 814.349734 -0.3735 -0.00015246 1.1782 0.0004809 0.80465 0.00032845 408.1825099908239 23.357 0.34265 23.357 23.126 23.469 0 27 16 2 0 0 0 8.7369 1 11919 11919 8.5933 2.8329 1 692720 + 14444 20815 9759 9958 17458 17458 -0.06486714361756185 FSEVRFHPL 9 Unmodified _FSEVRFHPL_ 0 0 0 REV__ENSG00000134452|ENST00000362091|FBH1 REV__ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.79736328125 2 566.300916 1130.58728 0.70486 0.00039916 -4.0965 -0.0023199 -3.3917 -0.0019207 566.799380985484 49.781 0.29972 49.781 49.606 49.905 0 34 13 3 0 0 0 0.28047 1 27458 27458 18.135 2.2878 1 7073500 + 14445 19985 9760 9959 17459 17459 0.027208515714846726 FSEVRFHPL 9 Unmodified _FSEVRFHPL_ 0 0 0 REV__ENSG00000134452|ENST00000362091|FBH1 REV__ENSG00000134452|ENST00000362091|FBH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 566.300916 1130.58728 0.70486 0.00039916 -4.0965 -0.0023199 -3.3917 -0.0019207 566.799380985484 49.781 0.29972 49.781 49.606 49.905 0 -0.17528 -0.0030191 NaN 18.135 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7073500 + 14446 19985 9760 9959 0.027208515714846726 FSFDSQFLSFF 11 Unmodified _FSFDSQFLSFF_ 0 0 0 REV__ENST00000511171.5_1_6:33748933-33749074:-|nuORF REV__ENST00000511171.5_1_6:33748933-33749074:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2138671875 3 457.880044 1370.6183 0.48736 0.00022315 -1.5979 -0.00073166 -1.1106 -0.00050851 457.87921986743424 74.738 0.23781 74.784 74.616 74.854 0.045967 26 10 3 0 0 0 0.62338 1 41183 41183 5.5233 3.5958 1 1380300 + 14447 28154 9761 9960 17460 17460 -0.0521803990495755 FSFEIPEHH 9 Unmodified _FSFEIPEHH_ 0 0 0 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7791748046875 2 571.766906 1141.51926 0.99042 0.00056629 -0.12884 -7.3665E-05 0.86158 0.00049262 571.766519963987 46.113 0.46857 46.113 45.882 46.351 0 90 22 6 0 0 0 0.41742 1 25113 25113 11.64 0.81637 1 94994000 14448 2836 9762 9961 17461 17461 -0.045840180791856255 FSFEVPFEQI 10 Unmodified _FSFEVPFEQI_ 0 0 0 ENSG00000067715|ENST00000261205|SYT1 ENSG00000067715|ENST00000261205|SYT1 ENSG00000067715|ENST00000261205|SYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8731079101562 3 414.87289 1241.59684 -0.52208 -0.0002166 -1.6532 -0.00068585 -2.1752 -0.00090245 414.8724685461618 25.411 0.20124 25.411 25.305 25.507 0 14 9 2 0 0 0 0.69064 1 13024 13024 1.9064 1.1298 1 705200 14449 964 9763 9962 17462 17462 -0.014294249336671783 FSFFWHTF 8 Unmodified _FSFFWHTF_ 0 0 0 REV__ENSG00000165650|ENST00000334464|PDZD8 REV__ENSG00000165650|ENST00000334464|PDZD8 MSMS AL20221201_MKP_PDAC_01 4 373.5088806152344 3 373.507994 1117.50215 NaN NaN NaN NaN NaN NaN NaN 27.778 1 24.741 24.241 25.241 -3.0365 0 0 0 0.97444 1 15422 15422 3.5965 0 1 + 14450 22032 9764 9963 17463 17463 -0.05189893894339548 FSFKLGIDKI 10 Unmodified _FSFKLGIDKI_ 0 0 0 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|34 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.898193359375 3 389.897258 1166.66995 0.59137 0.00023057 -1.2763 -0.00049764 -0.68497 -0.00026707 389.8973690578055 56.904 0.13452 56.835 56.78 56.915 -0.068737 11 6 2 0 0 0 0.64628 1 30967 30967 5.0475 0.51865 1 2006900 + 14451 16788 9765 9964 17464 17464 0.09327748579585204 FSFKLGIDKI 10 Unmodified _FSFKLGIDKI_ 0 0 0 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|34 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3427124023438 2 584.342249 1166.66995 0.64832 0.00037884 0.10236 5.9814E-05 0.75068 0.00043865 584.3421600888603 61.48 0.28008 61.447 61.271 61.551 -0.032787 36 13 3 0 0 0 0.44171 1 33508 33508 19.362 1.2156 1 26109000 + 14452 16788 9765 9964 17465 17465 0.09327748579585204 FSFLFVFSF 9 Unmodified _FSFLFVFSF_ 0 0 0 REV__ENST00000407418.7_1_22:39258389-39258611:-|nuORF REV__ENST00000407418.7_1_22:39258389-39258611:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2937622070312 2 570.791861 1139.56917 1.297 0.00074034 -0.58223 -0.00033233 0.71481 0.00040801 570.7913448331508 90.866 0.77103 84.691 84.257 85.028 -6.1757 92 45 4 0 0 0 0.10734 1 59971 59971 32.305 3.2239 1 23232000 + 14453 26668 9766 9965 17466 17466 0.004967165967627807 FSFLTSAMHP 10 Unmodified _FSFLTSAMHP_ 0 0 0 REV__ENSG00000139826|ENST00000375898|ABHD13 REV__ENSG00000139826|ENST00000375898|ABHD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2665405273438 2 569.273509 1136.53247 0.16114 9.173E-05 -0.86824 -0.00049427 -0.7071 -0.00040254 569.2730072591278 38.695 0.54543 38.408 38.196 38.741 -0.28687 75 25 4 0 0 0 0.44373 1 20544 20544 19.257 0 1 15094000 + 14454 20433 9767 9966 17467 17467 -0.03033903291475326 FSFQDRLSK 9 Unmodified _FSFQDRLSK_ 0 0 0 REV__ENSG00000172123|ENST00000304905|SLFN12 REV__ENSG00000172123|ENST00000304905|SLFN12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8480224609375 3 376.532979 1126.57711 0.1009 3.7991E-05 -0.41556 -0.00015647 -0.31467 -0.00011848 376.5330542908407 34.398 0.27518 34.425 34.265 34.54 0.027401 26 12 3 0 0 0 0.21493 1 18074 18074 4.897 0 1 2506300 + 14455 22627 9768 9967 17468 17468 0.01888243846201476 FSFRDSLEL 9 Unmodified _FSFRDSLEL_ 0 0 0 ENST00000303391.10_2_X:153294741-153294930:-|nuORF ENST00000303391.10_2_X:153294741-153294930:-|nuORF ENST00000303391.10_2_X:153294741-153294930:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.284423828125 2 557.282389 1112.55022 1.8613 0.0010372 0.85075 0.00047411 2.712 0.0015114 557.2827517597843 100.32 0.21989 100.28 100.21 100.43 -0.036301 27 7 5 0 0 0 0.16226 1 55725 55725 26.884 1.4843 1 757990000 14456 11595 9769 9968 17469 17469 -0.0015486476497699186 FSFRMLLY 8 Unmodified _FSFRMLLY_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.785400390625 2 538.783513 1075.55247 NaN NaN NaN NaN NaN NaN NaN 58.987 1 58.987 58.487 59.487 0 0 0 0 0.97444 1 32857 32857 5.2307 2.6532 1 + 14457 29555 9770 9969 17470 17470 0.017718924391829205 FSFSDHSGPI 10 Unmodified _FSFSDHSGPI_ 0 0 0 REV__ENSG00000182836|ENST00000377801|PLCXD3 REV__ENSG00000182836|ENST00000377801|PLCXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2512817382812 2 547.251089 1092.48762 0.82275 0.00045025 -0.73789 -0.00040381 0.084859 4.6439E-05 547.2507804354142 57.909 0.29599 57.843 57.694 57.99 -0.066036 47 14 5 0 0 0 0.41822 1 31503 31503 30.637 10.183 1 11626000 + 14458 23299 9771 9970 17471 17471 -0.054920108331543815 FSFSFFFFFSF 11 Unmodified _FSFSFFFFFSF_ 0 0 0 REV__ENST00000531017.5_1_19:50314409-50316363:-|nuORF REV__ENST00000531017.5_1_19:50314409-50316363:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2251892089844 3 486.225264 1455.65396 0.58042 0.00028221 -1.7066 -0.00082977 -1.1261 -0.00054756 486.22458460421007 52.661 0.64517 52.228 51.83 52.475 -0.43367 52 32 2 0 0 0 0.6889 1 28487 28487 2.4348 1.22 1 6883900 + 14459 28444 9772 9971 17472 17472 -0.055639576572957594 FSFSVSACLP 10 Unmodified _FSFSVSACLP_ 0 0 0 REV__ENST00000155674.9_1_22:17618610-17618835:-|nuORF REV__ENST00000155674.9_1_22:17618610-17618835:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7529907226562 2 529.254785 1056.49502 0.20149 0.00010664 -4.0635 -0.0021506 -3.862 -0.002044 529.2527689837466 55.675 0.37489 55.197 55.026 55.401 -0.47798 23 17 2 0 0 0 0.22149 1 30243 30243 20.454 0 1 1468900 + 14460 24709 9773 9972 17473 17473 -0.030969945570859636 FSFTESTFQ 9 Unmodified _FSFTESTFQ_ 0 0 0 REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A REV__nc|ENSG00000146966|Q9ULE3-2|DENND2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7921142578125 2 547.245472 1092.47639 0.71343 0.00039042 -3.7849 -0.0020713 -3.0715 -0.0016808 547.2434428033133 82.92 0.35619 76.744 76.608 76.964 -6.1757 29 19 2 0 0 0 0.15672 1 54444 54444 14.838 0 1 11070000 + 14461 20857 9774 9973 17474 17474 -0.06614832927289171 FSFVDFYF 8 Unmodified _FSFVDFYF_ 0 0 0 REV__ENST00000230859.7_2_5:6755723-6755771:+|nuORF REV__ENST00000230859.7_2_5:6755723-6755771:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2460327148438 2 536.244744 1070.47493 1.0178 0.0005458 -1.4436 -0.00077411 -0.42575 -0.00022831 536.2431164420545 50.361 0.53914 44.822 44.546 45.085 -5.5391 72 34 3 0 0 0 0.46494 1 31643 31643 38.151 6.0342 1 28162000 + 14462 24815 9775 9974 17475 17475 -0.05748422225383365 FSFYWNEQL 9 Unmodified _FSFYWNEQL_ 0 0 0 REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8576965332031 3 411.857351 1232.55022 -0.040236 -1.6572E-05 -0.58238 -0.00023986 -0.62262 -0.00025643 411.85721519022906 21.882 0.19846 21.896 21.793 21.991 0.013796 20 9 3 0 0 0 0.51371 1 11199 11199 6.6304 3.0433 1 892190 + 14463 28084 9776 9975 17476 17476 -0.056748647649556005 FSFYWNEQL 9 Unmodified _FSFYWNEQL_ 0 0 0 REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.857351 1232.55022 -0.040236 -1.6572E-05 -0.58238 -0.00023986 -0.62262 -0.00025643 411.85721519022906 21.882 0.19846 21.896 21.793 21.991 0.013796 0.13138 -0.00080959 NaN 6.6304 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 892190 + 14464 28084 9776 9975 -0.056748647649556005 FSFYWNEQL 9 Unmodified _FSFYWNEQL_ 0 0 0 REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 411.857351 1232.55022 0.45303 0.00018658 3.6359 0.0014975 4.089 0.0016841 412.19441701535834 24.461 0.19001 21.634 21.519 21.709 -2.8273 -0.13138 0.0044024 NaN 6.6304 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1508500 + 14465 28084 9776 9975 -0.056748647649556005 FSGAALGCS 9 Unmodified _FSGAALGCS_ 0 0 0 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 MULTI-MSMS AL20221201_MKP_PDAC_01 4 812.3605346679688 1 812.360715 811.353439 1.467 0.0011917 -0.39591 -0.00032162 1.0711 0.00087008 812.3605436394154 101.16 0.10867 94.983 94.923 95.032 -6.1757 11 6 2 0 0 0 0.022193 1 67809 67809 61.357 2.6787 1 30601000 14466 6378 9777 9976 17477 17477 -0.05978367859552236 FSGDSKLLF 9 Unmodified _FSGDSKLLF_ 0 0 0 REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2694702148438 2 507.26875 1012.52295 0.066923 3.3948E-05 -1.1618 -0.00058936 -1.0949 -0.00055542 507.2683550992815 93.051 0.44918 92.594 92.436 92.885 -0.4574 38 23 2 0 0 0 0.5029 1 50790 50790 7.2892 0.56607 1 2490900 + 14467 18407 9778 9977 17478 17478 0.01718651694682194 FSGEFYPFAF 10 Unmodified _FSGEFYPFAF_ 0 0 0 REV__ENSG00000109851|ENST00000524983|DBX1 REV__ENSG00000109851|ENST00000524983|DBX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2747802734375 2 606.274032 1210.53351 0.15596 9.4553E-05 1.5971 0.0009683 1.7531 0.0010629 606.2752056028112 82.107 0.53749 75.931 75.694 76.232 -6.1757 66 29 3 0 0 0 0.5905 1 54122 54122 11.64 0.81637 1 37850000 + 14468 18675 9779 9978 17479 17479 -0.06333365650903033 FSGGAFQFPM 10 Unmodified _FSGGAFQFPM_ 0 0 0 REV__ENSG00000080573|ENST00000264828|COL5A3 REV__ENSG00000080573|ENST00000264828|COL5A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7467651367188 2 544.747127 1087.4797 0.12143 6.615E-05 2.4469 0.0013329 2.5683 0.0013991 544.7482431261243 47.005 0.30988 47.005 46.839 47.149 0 33 14 3 0 0 0 0.42068 1 25696 25696 20.454 0 1 9489000 + 14469 17669 9780 9979 17480 17480 -0.06053861354280343 FSGGAFQFPM 10 Unmodified _FSGGAFQFPM_ 0 0 0 REV__ENSG00000080573|ENST00000264828|COL5A3 REV__ENSG00000080573|ENST00000264828|COL5A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 544.747127 1087.4797 0.12143 6.615E-05 2.4469 0.0013329 2.5683 0.0013991 544.7482431261243 47.005 0.30988 47.005 46.839 47.149 0 0 0 NaN 20.454 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 9489000 + 14470 17669 9780 9979 -0.06053861354280343 FSGGASSEWAY 11 Unmodified _FSGGASSEWAY_ 0 0 0 REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2457885742188 2 581.246003 1160.47745 -0.41862 -0.00024332 0.31488 0.00018302 -0.10374 -6.0299E-05 581.2462834889852 55.986 0.28229 55.508 55.36 55.642 -0.47798 20 13 2 0 0 0 0.65108 1 30395 30395 8.7454 0.83525 1 2557200 + 14471 17960 9781 9980 17481 17481 -0.09636618558374721 FSGHEMAHQL 10 Unmodified _FSGHEMAHQL_ 0 0 0 REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.1776733398438 3 386.178319 1155.51313 1.5308 0.00059117 2.2502 0.00086899 3.781 0.0014602 386.179192026473 37.029 0.41562 32.745 32.54 32.955 -4.2835 55 25 3 0 0 0 0.65282 1 21628 21628 4.7159 0 1 19565000 + 14472 17301 9782 9981 17482 17482 -0.05840859582349367 FSGLCGLL 8 Unmodified _FSGLCGLL_ 0 0 0 ENST00000366610.7_1_1:234742194-234742305:-|nuORF ENST00000366610.7_1_1:234742194-234742305:-|nuORF ENST00000366610.7_1_1:234742194-234742305:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.2145385742188 2 405.214932 808.415311 NaN NaN NaN NaN NaN NaN NaN 45.839 1 40.884 40.384 41.384 -4.9549 0 0 0 0.95607 1 28213 28213 9.3474 2.9933 1 14473 12205 9783 9982 17483 17483 0.0034398355960547633 FSGLVLATSI 10 Unmodified _FSGLVLATSI_ 0 0 0 REV__ENST00000389934.7_2_17:56693632-56699050:-|nuORF REV__ENST00000389934.7_2_17:56693632-56699050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2919921875 2 504.292225 1006.5699 -0.024204 -1.2206E-05 0.44516 0.00022449 0.42095 0.00021228 504.29245042465806 90.499 0.22635 90.004 89.869 90.095 -0.49457 15 10 2 0 0 0 0.54684 1 49467 49467 13.906 2.2658 1 571080 + 14474 26365 9784 9983 17484 17484 0.06687511245809219 FSGLVLATSI 10 Unmodified _FSGLVLATSI_ 0 0 0 REV__ENST00000389934.7_2_17:56693632-56699050:-|nuORF REV__ENST00000389934.7_2_17:56693632-56699050:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 504.292225 1006.5699 -0.024204 -1.2206E-05 0.44516 0.00022449 0.42095 0.00021228 504.29245042465806 90.499 0.22635 90.004 89.869 90.095 -0.49457 0 0 NaN 13.906 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 571080 + 14475 26365 9784 9983 0.06687511245809219 FSGPELAM 8 Unmodified _FSGPELAM_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.3972778320312 1 851.396767 850.38949 0.79683 0.00067842 -0.52744 -0.00044906 0.26939 0.00022936 851.3965185224613 83.228 0.53608 77.052 76.808 77.345 -6.1757 73 28 4 0 0 0 0.40035 1 54578 54578 44.407 1.439 1 26217000 14476 1181 9785 9984 17485 17485 -0.041689106826765965 FSGSEWGG 8 Unmodified _FSGSEWGG_ 0 0 0 REV__ENST00000538930.5_1_16:57075247-57096263:+|nuORF REV__ENST00000538930.5_1_16:57075247-57096263:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.3385009765625 1 826.336609 825.329333 0.52248 0.00043175 0.44809 0.00037027 0.97057 0.00080202 826.3369616495029 82.335 0.45605 76.159 75.883 76.339 -6.1757 29 24 2 0 0 0 0.57045 2 53996 53996;54113 28.487 28.487 1 7797300 + 14477 28564 9786 9985 17486;17487 17486 -0.09031885021556718 FSGSPPPDVIW 11 Unmodified _FSGSPPPDVIW_ 0 0 0 ENSG00000179057|ENST00000513874|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 ENSG00000179057|ENST00000513874|IGSF22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2973022460938 2 601.298039 1200.58152 NaN NaN NaN NaN NaN NaN NaN 63.042 1 62.556 62.056 63.056 -0.48617 0 0 0 0.58065 1 34375 34375 21.537 1.0834 1 14478 8805 9787 9986 17488 17488 -0.010742917308789401 FSHAVIQFGF 10 Unmodified _FSHAVIQFGF_ 0 0 0 ENST00000525494.1_1_11:70016194-70034107:+|nuORF ENST00000525494.1_1_11:70016194-70034107:+|nuORF ENST00000525494.1_1_11:70016194-70034107:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5465698242188 3 384.86607 1151.57638 1.2869 0.00049529 -2.6365 -0.0010147 -1.3495 -0.00051939 384.86506259657426 36.26 0.37775 32.068 31.741 32.118 -4.1928 36 22 2 0 0 0 0.22941 1 21046 21046 8.4443 3.1474 1 7025400 14479 14798 9788 9987 17489 17489 0.006654491971858079 FSHHLLYAEW 10 Unmodified _FSHHLLYAEW_ 0 0 0 REV__ENST00000463783.1_1_3:196663884-196664019:-|nuORF REV__ENST00000463783.1_1_3:196663884-196664019:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8820495605469 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 8.0728 1 8.0728 7.5728 8.5728 0 0 0 0 1.0024 1 3857 3857 0.13989 0.056541 1 + 14480 27359 9789 9988 17490 17490 -0.019437807453869027 FSHHRTCL 8 Unmodified _FSHHRTCL_ 0 0 0 ENSG00000132746|ENST00000673966|ALDH3B2 ENSG00000132746|ENST00000673966|ALDH3B2 ENSG00000132746|ENST00000673966|ALDH3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2455139160156 2 500.742711 999.470869 0.38294 0.00019176 0.68433 0.00034267 1.0673 0.00053443 501.24466995452326 92.066 0.14632 92.066 91.969 92.115 0 12 8 2 0 0 0 0.80624 1 50916 50916 2.8892 0 1 308630 14481 4446 9790 9989 17491 17491 -0.028887902000860777 FSHLAAPL 8 Unmodified _FSHLAAPL_ 0 0 0 REV__ENST00000527156.1_3_1:90309067-90309214:+|nuORF REV__ENST00000527156.1_3_1:90309067-90309214:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2406005859375 2 428.239796 854.465038 0.90307 0.00038673 0.71664 0.0003069 1.6197 0.00069362 428.24021752174946 51.454 0.23819 45.805 45.722 45.96 -5.649 24 14 2 0 0 0 0.5953 1 32365 32365 26.341 0 1 27229000 + 14482 28383 9791 9990 17492 17492 0.03198434559908492 FSHRIYVAY 9 Unmodified _FSHRIYVAY_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3024291992188 2 578.300916 1154.58728 0.22582 0.00013059 1.3359 0.00077255 1.5617 0.00090314 578.3019564017882 37.634 0.22046 37.651 37.532 37.753 0.01704 17 10 2 0 0 0 0.040337 1 19991 19991 45.74 30.902 1 3254300 14483 4654 9792 9991 17493 17493 0.01616851571452571 FSHVFGVTNP 10 Unmodified _FSHVFGVTNP_ 0 0 0 REV__ENST00000380738.8_1_9:15465053-15465170:-|nuORF REV__ENST00000380738.8_1_9:15465053-15465170:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8539428710938 3 368.853941 1103.53999 -0.043923 -1.6201E-05 0.098662 3.6392E-05 0.054738 2.0191E-05 368.8539483750759 39.406 0.23539 39.109 39.029 39.264 -0.29716 19 10 2 0 0 0 0.67459 1 20797 20797 3.0723 0 1 6377800 + 14484 26317 9793 9992 17494 17494 -0.00763427699530439 FSHWFFFFFSR 11 Unmodified _FSHWFFFFFSR_ 0 0 0 REV__ENST00000536682.1_19:35167898-35168335:-|nuORF REV__ENST00000536682.1_19:35167898-35168335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.9150390625 3 518.915423 1553.72444 -0.13565 -7.0391E-05 -0.57126 -0.00029644 -0.70691 -0.00036683 518.9151382761967 24.737 0.23308 24.737 24.61 24.844 0 40 13 4 0 0 0 0.73237 1 12661 12661 1.2148 0.10508 1 3261000 + 14485 28541 9794 9993 17495 17495 -0.030272395489646442 FSHWQSSPAS 10 Unmodified _FSHWQSSPAS_ 0 0 0 ENST00000375749.7_1_20:30822487-30822760:+|nuORF ENST00000375749.7_1_20:30822487-30822760:+|nuORF ENST00000375749.7_1_20:30822487-30822760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.5047912597656 3 378.505201 1132.49377 NaN NaN NaN NaN NaN NaN NaN 47.9 1 42.666 42.166 43.166 -5.2339 0 0 0 0.96981 1 29781 29781 1.9064 0 1 14486 12479 9795 9994 17496 17496 -0.06717492601592312 FSIENLDRI 9 Unmodified _FSIENLDRI_ 0 0 0 REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7964477539062 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 31.848 1 31.848 31.348 32.348 0 0 0 0 0.098163 1 16607 16607 43.858 1.7637 1 + 14487 23274 9796 9995 17497 17497 0.02820824126365551 FSIEVTSTFF 10 Unmodified _FSIEVTSTFF_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2931518554688 2 589.292422 1176.57029 0.94785 0.00055856 -2.3137 -0.0013635 -1.3659 -0.00080491 589.2909285859132 88.778 1.4282 82.602 82.06 83.488 -6.1757 249 79 5 0 0 0 0.24625 1 58554 58554 30.637 5.9627 1 586300000 14488 3069 9797 9996 17498 17498 -0.010931138250271033 FSIFFFIY 8 Unmodified _FSIFFFIY_ 0 0 0 REV__ENST00000229769.2_1_6:35434224-35434398:+|nuORF REV__ENST00000229769.2_1_6:35434224-35434398:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.28076171875 2 542.281129 1082.54771 0.25515 0.00013836 -2.6367 -0.0014299 -2.3816 -0.0012915 542.2800560979176 53.542 0.60082 53.09 52.841 53.442 -0.45173 44 29 3 0 0 0 0.71616 1 28982 28982 15.768 2.2603 1 2119200 + 14489 24810 9798 9997 17499 17499 0.009733315680477972 FSIMEIKSW 9 Unmodified _FSIMEIKSW_ 0 0 0 ENST00000304895.8_1_7:65425676-65425877:-|nuORF ENST00000304895.8_1_7:65425676-65425877:-|nuORF ENST00000304895.8_1_7:65425676-65425877:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 570.7947998046875 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 64.212 1 58.036 57.536 58.536 -6.1757 0 0 0 0.18753 1 41581 41581 32.305 0 1 14490 11608 9799 9998 17500 17500 0.004315538853916223 FSIMEMFWIV 10 Unmodified _FSIMEMFWIV_ 0 0 0 ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8820190429688 3 434.880222 1301.61884 NaN NaN NaN NaN NaN NaN NaN 77.709 1 77.762 77.262 78.262 0.052452 0 0 0 1.0019 1 42896 42896 0.15932 0.01943 1 14491 14315 9800 9999 17501 17501 -0.019906597811313986 FSIMEMFWIV 10 Unmodified _FSIMEMFWIV_ 0 0 0 ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8808288574219 3 434.880222 1301.61884 NaN NaN NaN NaN NaN NaN NaN 104.63 1 104.58 104.08 105.08 -0.048737 0 0 0 1.0019 1 58093 58093 0.15932 0.01943 1 14492 14315 9800 9999 17502 17502 -0.019906597811313986 FSIQWRAL 8 Unmodified _FSIQWRAL_ 0 0 0 ENST00000530761.5_1_11:117857246-117857426:+|nuORF ENST00000530761.5_1_11:117857246-117857426:+|nuORF ENST00000530761.5_1_11:117857246-117857426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2901916503906 2 510.784902 1019.55525 0.41139 0.00021013 -1.385 -0.00070742 -0.97358 -0.00049729 510.78088816499695 50.615 0.33523 50.615 50.369 50.704 0 27 15 3 0 0 0 0.70294 1 27864 27864 16.942 4.4107 1 1991400 14493 14895 9801 10000 17503 17503 0.046254838883101 FSKDIFSVINF 11 Unmodified _FSKDIFSVINF_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5;ENST00000563489.1_1_16:87866578-87870352:-|nuORF ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.5671691894531 3 439.567689 1315.68124 0.42684 0.00018762 -1.6748 -0.00073618 -1.2479 -0.00054856 439.56701203677056 78.686 0.21185 72.51 72.384 72.596 -6.1757 19 13 2 0 0 0 0.62338 1 51563 51563 5.5233 1.647 1 10270000 14494 2120 9802 10001 17504 17504 0.036025258830932216 FSKFTSKF 8 Unmodified _FSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2657775878906 2 496.26601 990.517468 NaN NaN NaN NaN NaN NaN NaN 44.537 1 44.515 44.015 45.015 -0.022064 0 0 0 0.040958 1 23899 23899 103.82 54.269 1 14495 1086 9803 10002 17505 17505 0.021829729028581824 FSKGCNSCGY 10 Unmodified _FSKGCNSCGY_ 0 0 0 REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2100219726562 2 533.210052 1064.40555 0.38104 0.00020318 -1.8394 -0.00098078 -1.4584 -0.00077761 533.2093176058347 90.899 0.70284 90.404 90.208 90.911 -0.49457 70 42 2 0 0 0 0.69064 1 49738 49738 3.9444 1.0552 1 2177600 + 14496 18402 9804 10003 17506 17506 -0.12407572508095654 FSKLGGAKELI 11 Unmodified _FSKLGGAKELI_ 0 0 0 REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.887939453125 3 388.23253 1161.67576 NaN NaN NaN NaN NaN NaN NaN 20.165 1 17.509 17.009 18.009 -2.6564 0 0 0 0.90499 1 10729 10729 7.0371 1.7402 1 + 14497 26585 9805 10004 17507 17507 0.10138847091275238 FSKMDERW 8 Unmodified _FSKMDERW_ 0 0 0 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7557373046875 2 549.755484 1097.49641 0.4086 0.00022463 0.39658 0.00021802 0.80518 0.00044265 549.7555803785118 92.885 0.60205 92.428 92.169 92.771 -0.4574 55 30 2 0 0 0 0.80148 1 50698 50698 7.9102 6.2575 1 18434000 + 14498 29793 9806 10005 17508 17508 -0.048433604683168596 FSKSNNIAF 9 Unmodified _FSKSNNIAF_ 0 0 0 REV__ENSG00000213281|ENST00000369535|NRAS REV__ENSG00000213281|ENST00000369535|NRAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2378540039062 2 514.263999 1026.51345 -0.19597 -0.00010078 -1.6302 -0.00083834 -1.8261 -0.00093912 514.2630396649968 78.552 0.38091 78.066 77.942 78.323 -0.48595 23 15 2 0 0 0 0.49272 1 43052 43052 7.9102 1.187 1 455570 + 14499 24280 9807 10006 17509 17509 0.0012488340912568674 FSKTILILL 9 Unmodified _FSKTILILL_ 0 0 0 REV__ENST00000265404.6_1_4:68472071-68472191:+|nuORF REV__ENST00000265404.6_1_4:68472071-68472191:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2800903320312 2 524.344261 1046.67397 0.79452 0.0004166 0.27955 0.00014658 1.0741 0.00056319 524.3445945413547 82.804 0.25638 82.866 82.764 83.021 0.062004 12 9 2 0 0 0 0.209 1 45825 45825 7.2892 0.56607 1 1168000 + 14500 25092 9808 10007 17510 17510 0.15249838073327737 FSKVDLHFMKK 11 Unmodified _FSKVDLHFMKK_ 0 0 0 nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10 nc|ENSG00000144290|Q6U841-2|SLC4A10 nc|ENSG00000144290|Q6U841-2|SLC4A10 MSMS AL20221201_MKP_PDAC_01 4 690.3803100585938 2 690.37884 1378.74313 NaN NaN NaN NaN NaN NaN NaN 51.584 1 45.935 45.435 46.435 -5.649 0 0 0 0.63856 1 32471 32471 19.362 2.249 1 14501 16248 9809 10008 17511 17511 0.06890554030542262 FSLAASIDASP 11 Unmodified _FSLAASIDASP_ 0 0 0 ENSG00000204424|ENST00000375832|LY6G6F;nc|ENSG00000204424|Q5SQ64-2|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.774169921875 2 539.774396 1077.53424 0.88914 0.00047993 -0.33004 -0.00017815 0.5591 0.00030179 539.7741926669787 71.445 0.3633 71.484 71.279 71.642 0.039024 48 16 4 0 0 0 0.48615 1 39392 39392 17.113 0 1 10461000 14502 10282 9810 10009 17512 17512 -0.0014257100187933247 FSLAFQVY 8 Unmodified _FSLAFQVY_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7541198730469 2 487.752736 973.490919 0.86446 0.00042164 1.1163 0.00054446 1.9807 0.0009661 487.75335064547573 74.703 0.3113 74.227 74.065 74.376 -0.47588 18 12 2 0 0 0 0.76266 1 40876 40876 11.64 0.81637 1 625250 + 14503 20564 9811 10010 17513 17513 0.0031128401151363505 FSLAHQPLVL 10 Unmodified _FSLAHQPLVL_ 0 0 0 ENST00000435519.6_1_7:99809411-99820265:-|nuORF;ENST00000328453.9_1_7:99809411-99820265:-|nuORF ENST00000435519.6_1_7:99809411-99820265:-|nuORF ENST00000435519.6_1_7:99809411-99820265:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2168579101562 3 375.553603 1123.63898 1.4863 0.0005582 -0.46781 -0.00017569 1.0185 0.00038251 375.55334985821656 80.281 1.9695 74.105 72.564 74.534 -6.1757 367 97 5 0 0 0 0.65471 1 51809 51809 7.9454 0.84368 1 1350300000 14504 11835 9812 10011 17514 17514 0.08210595265359188 FSLCGMTDIH 10 Unmodified _FSLCGMTDIH_ 0 0 0 ENST00000296702.9_1_5:145890244-145890412:+|nuORF ENST00000296702.9_1_5:145890244-145890412:+|nuORF ENST00000296702.9_1_5:145890244-145890412:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 562.25146484375 2 562.249177 1122.4838 NaN NaN NaN NaN NaN NaN NaN 36.594 1 32.31 31.81 32.81 -4.2835 0 0 0 0.83398 1 21384 21384 10.824 1.4765 1 14505 11513 9813 10012 17515 17515 -0.07254139922861214 FSLCLPHRRID 11 Unmodified _FSLCLPHRRID_ 0 0 0 REV__chr11:17397016-17397193|98|10.91|0.38|4.84|-|ENST00000647086|ABCC8,ABCC8 REV__chr11:17397016-17397193|98|10.91|0.38|4.84|-|ENST00000647086|ABCC8,ABCC8 MSMS AL20221201_MKP_PDAC_01 4 453.2440185546875 3 452.911685 1355.71322 NaN NaN NaN NaN NaN NaN NaN 37.831 1 33.462 32.962 33.962 -4.3689 0 0 0 0.93737 1 22239 22239 4.4062 1.0865 1 + 14506 16771 9814 10013 17516 17516 0.04959615085249425 FSLDPHARR 9 Unmodified _FSLDPHARR_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2955322265625 2 549.793789 1097.57303 0.78445 0.00043128 0.028237 1.5525E-05 0.81268 0.00044681 550.294676336444 49.6 0.2546 49.208 49.098 49.353 -0.3923 30 12 3 0 0 0 0.43463 1 26715 26715 10.824 0 1 4371400 + 14507 20378 9815 10014 17517 17517 0.028141991431766655 FSLEACQGIL 10 Unmodified _FSLEACQGIL_ 0 0 0 nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.773193359375 2 540.773342 1079.53213 0.26906 0.0001455 -1.4913 -0.00080645 -1.2222 -0.00066095 540.7724536102401 67.28 0.24419 66.798 66.695 66.939 -0.48219 14 10 2 0 0 0 0.60623 1 36766 36766 10.824 0.75 1 820110 14508 10505 9816 10015 17518 17518 -0.004453230113085738 FSLEYGPSCIY 11 Unmodified _FSLEYGPSCIY_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.786865234375 2 639.789189 1277.56383 NaN NaN NaN NaN NaN NaN NaN 20.892 1 20.892 20.392 21.392 0 0 0 0 0.93893 1 10536 10536 3.2813 0 1 + 14509 21951 9817 10016 17519 17519 -0.06385375048034803 FSLFQNRF 8 Unmodified _FSLFQNRF_ 0 0 0 REV__ENSG00000189077|ENST00000493111|TMEM120A REV__ENSG00000189077|ENST00000493111|TMEM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.5191040039062 3 353.518781 1057.53451 0.40147 0.00014193 -0.11031 -3.8998E-05 0.29116 0.00010293 353.5186778808248 36.259 0.20202 36.259 36.167 36.369 0 25 9 3 0 0 0 0.78849 1 19214 19214 10.824 0 1 12206000 + 14510 23759 9818 10017 17520 17520 0.00804893508643545 FSLFQNRF 8 Unmodified _FSLFQNRF_ 0 0 0 REV__ENSG00000189077|ENST00000493111|TMEM120A REV__ENSG00000189077|ENST00000493111|TMEM120A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7752685546875 2 529.774534 1057.53451 NaN NaN NaN NaN NaN NaN NaN 36.315 1 36.315 35.815 36.815 0 0 0 0 0.93587 1 19253 19253 13.508 0 1 + 14511 23759 9818 10017 17521 17521 0.00804893508643545 FSLGPMESP 9 Unmodified _FSLGPMESP_ 0 0 0 ENST00000454175.1_1_7:99103050-99103296:+|nuORF ENST00000454175.1_1_7:99103050-99103296:+|nuORF ENST00000454175.1_1_7:99103050-99103296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7261657714844 2 482.725861 963.437169 0.93656 0.0004521 -0.097534 -4.7082E-05 0.83902 0.00040502 482.72576716211574 80.946 0.34712 80.453 80.271 80.619 -0.49247 28 15 3 0 0 0 0.5029 1 44289 44289 7.2892 2.5332 1 2687300 14512 13567 9819 10018 17522 17522 -0.04601256482499139 FSLHCAYA 8 Unmodified _FSLHCAYA_ 0 0 0 OSBPL11|p.P568H|1|0.16|ENSG00000144909|chr3:125547544-125547544|G/T|missense_variant OSBPL11|p.P568H|1|0.16|ENSG00000144909|chr3:125547544-125547544|G/T|missense_variant OSBPL11|p.P568H|1|0.16|ENSG00000144909|chr3:125547544-125547544|G/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2060241699219 2 456.207638 910.400723 NaN NaN NaN NaN NaN NaN NaN 64.923 1 64.923 64.423 65.423 0 0 0 0 0.9706 1 36212 36212 6.3541 0 1 14513 16680 9820 10019 17523 17523 -0.05806088588565217 FSLHLYKRWFR 11 Unmodified _FSLHLYKRWFR_ 0 0 0 REV__ENSG00000160957|ENST00000617875|RECQL4 REV__ENSG00000160957|ENST00000617875|RECQL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 777.4327392578125 2 776.93042 1551.84629 -0.006301 -4.8954E-06 -0.05721 -4.4448E-05 -0.063511 -4.9343E-05 776.9304191412324 86.529 0.40756 86.529 86.317 86.725 0 38 18 3 0 0 0 0.7453 1 47970 47970 0 0 1 1365700 + 14514 21575 9821 10020 17524 17524 0.09243802533364942 FSLKFLKITLF 11 Unmodified _FSLKFLKITLF_ 0 0 0 REV__ENSG00000150261|ENST00000279783|OR8K1 REV__ENSG00000150261|ENST00000279783|OR8K1 MSMS AL20221201_MKP_PDAC_01 4 678.9207153320312 2 678.918124 1355.8217 NaN NaN NaN NaN NaN NaN NaN 101.64 1 95.468 94.968 95.968 -6.1757 0 0 0 0.94144 1 68217 68217 1.4819 0 1 + 14515 21019 9822 10021 17525 17525 0.1580172960730124 FSLLDEIVDT 10 Unmodified _FSLLDEIVDT_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2962036132812 2 576.295162 1150.57577 -0.16592 -9.5617E-05 -0.074184 -4.2752E-05 -0.2401 -0.00013837 576.2955237552165 34.668 0.19072 34.477 34.393 34.584 -0.19131 13 8 3 0 0 0 0.71123 1 18167 18167 1.6526 1.0511 1 2500400 14516 13668 9823 10022 17526 17526 0.006505649668270053 FSLLDEIVDT 10 Unmodified _FSLLDEIVDT_ 0 0 0 ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF ENST00000461981.5_1_2:201722417-201724542:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 576.295162 1150.57577 -0.32608 -0.00018792 1.1416 0.00065791 0.81555 0.00047 576.2955148379125 34.469 0.15756 34.469 34.422 34.579 0 -0.003929 0.0010854 NaN 1.6526 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1714400 14517 13668 9823 10022 0.006505649668270053 FSLLEGGRPED 11 Unmodified _FSLLEGGRPED_ 0 0 0 ENSG00000065357|ENST00000331886|DGKA;ENST00000552478.5_1_12:56330769-56331850:+|nuORF;nc|ENSG00000065357|P23743-2|DGKA;ENST00000551615.5_1_12:56325880-56331850:+|nuORF;nc|ENSG00000065357|P23743-3|DGKA;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF ENSG00000065357|ENST00000331886|DGKA ENSG00000065357|ENST00000331886|DGKA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3013916015625 2 610.30131 1218.58807 NaN NaN NaN NaN NaN NaN NaN 58.122 1 57.632 57.132 58.132 -0.48974 0 0 0 0.93613 1 31596 31596 5.2969 0.066215 1 14518 900 9824 10023 17527 17527 -0.012483985701237543 FSLLYYYM 8 Unmodified _FSLLYYYM_ 0 0 0 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.177490234375 3 367.177145 1098.50961 NaN NaN NaN NaN NaN NaN NaN 17.089 1 17.09 16.59 17.59 0.0010548 0 0 0 0.97444 1 8472 8472 0.45834 0 1 14519 9766 9825 10024 17528 17528 -0.03570922408948718 FSLPSASPTI 10 Unmodified _FSLPSASPTI_ 0 0 0 ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF ENSG00000183354|ENST00000399933|KIAA2026 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7620849609375 2 510.274032 1018.53351 0.30408 0.00015517 0.14859 7.5823E-05 0.45268 0.00023099 510.27407025019124 37.282 0.29179 37.282 37.117 37.409 0 24 14 3 0 0 0 0.23325 1 19740 19740 6.2058 1.8765 1 4276700 14520 9142;15035 9826 10025 17529 17529 0.02498634349092299 FSLPSSWDY 9 Unmodified _FSLPSSWDY_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF;ENST00000512931.5_1_4:81256922-81570142:+|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.24951171875 2 551.248015 1100.48148 NaN NaN NaN NaN NaN NaN NaN 64.956 1 64.956 64.456 65.456 0 0 0 0 0.6306 1 36233 36233 11.64 0.52583 1 14521 15861 9827 10026 17530 17530 -0.06474529064666967 FSLPVIPVLF 10 Unmodified _FSLPVIPVLF_ 0 0 0 REV__ENSG00000107020|ENST00000223864|PLGRKT REV__ENSG00000107020|ENST00000223864|PLGRKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8989868164062 3 377.898599 1130.67397 -0.04086 -1.5441E-05 1.3653 0.00051593 1.3244 0.00050049 377.89904232574037 32.987 0.59536 33.017 32.842 33.437 0.029743 71 25 4 0 0 0 0.69064 1 17393 17393 1.9064 0 1 11826000 + 14522 18547 9828 10027 17531 17531 0.11385838073306331 FSLPVTDGW 9 Unmodified _FSLPVTDGW_ 0 0 0 REV__ENST00000578547.1_1_17:26658777-26659262:-|nuORF REV__ENST00000578547.1_1_17:26658777-26659262:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2533569335938 2 511.2531 1020.49165 NaN NaN NaN NaN NaN NaN NaN 64.535 1 64.535 64.035 65.035 0 0 0 0 0.39043 1 35992 35992 20.454 2.3186 1 + 14523 29043 9829 10028 17532 17532 -0.017779213394419457 FSLQDISSKT 10 Unmodified _FSLQDISSKT_ 0 0 0 ENST00000597150.5_1_2:97261350-97297069:-|nuORF;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000487070.5_1_2:97267510-97285240:-|nuORF ENST00000597150.5_1_2:97261350-97297069:-|nuORF ENST00000597150.5_1_2:97261350-97297069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2928466796875 2 563.292953 1124.57135 0.76958 0.0004335 0.053403 3.0081E-05 0.82298 0.00046358 563.2929034194858 42.485 0.26745 42.485 42.318 42.586 0 28 12 3 0 0 0 0.57893 1 22994 22994 12.241 0 1 3737100 14524 3076 9830 10029 17533 17533 0.014051005439114306 FSLRMMNDF 9 Unmodified _FSLRMMNDF_ 0 0 0 ENST00000442668.6_3_9:95060594-95062262:-|nuORF;ENST00000463593.6_1_9:95061087-95062271:-|nuORF ENST00000442668.6_3_9:95060594-95062262:-|nuORF ENST00000442668.6_3_9:95060594-95062262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.767333984375 2 580.764994 1159.51544 0.16484 9.5732E-05 2.903 0.0016859 3.0678 0.0017817 580.7670738111195 61.72 0.24461 61.72 61.597 61.842 0 23 10 3 0 0 0 0.39863 1 34405 34405 12.532 2.4576 1 2647500 14525 13411 9831 10030 17534 17534 -0.057941471689218815 FSLTRSTHDI 10 Unmodified _FSLTRSTHDI_ 0 0 0 REV__ENSG00000107581|ENST00000369144|EIF3A REV__ENSG00000107581|ENST00000369144|EIF3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7761840820312 2 588.80402 1175.59349 0.62726 0.00036933 1.3283 0.00078208 1.9555 0.0011514 588.8049258716555 79.265 0.22935 78.779 78.663 78.893 -0.48596 15 9 2 0 0 0 0.22149 1 43423 43423 14.838 0 1 360210 + 14526 18565 9832 10031 17535 17535 0.012713250123169928 FSLTSRLTM 9 Oxidation (M) _FSLTSRLTM(Oxidation (M))_ FSLTSRLTM(1) FSLTSRLTM(44) 0 0 1 ENST00000395135.7_1_15:74335345-74335513:+|nuORF ENST00000395135.7_1_15:74335345-74335513:+|nuORF ENST00000395135.7_1_15:74335345-74335513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2783203125 2 536.278792 1070.54303 -0.11595 -6.2182E-05 1.0507 0.00056346 0.93474 0.00050128 536.2796373821845 39.614 0.43784 39.317 39.154 39.592 -0.29716 44 20 3 0 0 0 0.05483 1 20984 20984 43.772 14.691 1 15047000 14527 12761 9833 10032 17536 17536 1754 0.010580793629515028 FSLVFHMY 8 Unmodified _FSLVFHMY_ 0 0 0 ENST00000504087.5_1_4:125631970-125632054:-|nuORF ENST00000504087.5_1_4:125631970-125632054:-|nuORF ENST00000504087.5_1_4:125631970-125632054:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2503662109375 2 522.254588 1042.49462 0.94698 0.00049457 -0.69078 -0.00036076 0.25621 0.0001338 522.2539379578873 54.143 0.47542 54.143 53.876 54.352 0 54 21 3 0 0 0 0.77907 1 30158 30158 10.183 0.83596 1 75363000 14528 14484 9834 10033 17537 17537 -0.02492369486253665 FSLWWWRLHKF 11 Unmodified _FSLWWWRLHKF_ 0 0 0 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.4307861328125 2 803.427513 1604.84047 NaN NaN NaN NaN NaN NaN NaN 53.076 1 52.624 52.124 53.124 -0.45173 0 0 0 0.94307 1 28701 28701 0.30703 0.30703 1 + 14529 29021 9835 10034 17538 17538 0.06224704021724392 FSLYITELTQ 10 Unmodified _FSLYITELTQ_ 0 0 0 ENST00000478296.5_1_3:75787041-75787971:-|nuORF ENST00000478296.5_1_3:75787041-75787971:-|nuORF ENST00000478296.5_1_3:75787041-75787971:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.318359375 2 607.818804 1213.62306 0.75977 0.0004618 -1.3999 -0.00085089 -0.64013 -0.00038908 608.3187236955771 87.456 0.45967 81.281 81.017 81.476 -6.1757 53 24 3 0 0 0 0.18021 1 57602 57602 36.127 13.391 1 10747000 14530 14012 9836 10035 17539 17539 0.024788442377939646 FSMADSFEMEL 11 Unmodified _FSMADSFEMEL_ 0 0 0 REV__ENST00000586962.1_1_19:36507796-36536816:+|nuORF REV__ENST00000586962.1_1_19:36507796-36536816:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1306.641845703125 1 1306.533 1305.52573 0.76805 0.0010035 -2.1388 -0.0027945 -1.3708 -0.001791 1307.5294191050152 78.637 0.12622 78.69 78.625 78.752 0.052444 6 4 2 0 0 0 0.30577 1 43426 43426 1.1933 0.735 1 2170300 + 14531 29116 9837 10036 17540 17540 -0.11481629025001894 FSMFSSHH 8 Unmodified _FSMFSSHH_ 0 0 0 ENST00000529787.2_1_9:100092438-100109914:+|nuORF ENST00000529787.2_1_9:100092438-100109914:+|nuORF ENST00000529787.2_1_9:100092438-100109914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2089538574219 2 490.20817 978.401786 0.98406 0.0004824 0.064821 3.1776E-05 1.0489 0.00051417 490.20815129090875 80.967 0.35947 80.475 80.271 80.631 -0.49247 38 16 3 0 0 0 0.80676 1 44287 44287 2.5775 0 1 4399800 14532 14877 9838 10037 17541 17541 -0.08827874219650766 FSMKLLYF 8 Unmodified _FSMKLLYF_ 0 0 0 nc|ENSG00000123096|Q14714-3|SSPN;ENSG00000123096|ENST00000242729|SSPN nc|ENSG00000123096|Q14714-3|SSPN nc|ENSG00000123096|Q14714-3|SSPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1889953613281 3 350.189385 1047.54633 NaN NaN NaN NaN NaN NaN NaN 71.32 1 70.842 70.342 71.342 -0.47735 0 0 0 0.97444 1 39034 39034 1.8442 0 1 14533 3679 9839 10038 17542 17542 0.024453742076275375 FSNFQLFKY 9 Unmodified _FSNFQLFKY_ 0 0 0 REV__FASTKD1|p.A397Cfs*4|1|0.27|ENSG00000138399|chr2:169555149-169555150|-/A|frameshift_variant REV__FASTKD1|p.A397Cfs*4|1|0.27|ENSG00000138399|chr2:169555149-169555150|-/A|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7711181640625 2 597.303124 1192.5917 0.16957 0.00010129 -1.6084 -0.00096071 -1.4388 -0.00085943 597.3020171335177 68.234 0.21033 68.234 68.204 68.415 0 11 9 2 0 0 0 0.21367 1 38059 38059 4.756 0 1 204040 + 14534 20330 9840 10039 17543 17543 0.0031031599439756974 FSNITGIDY 9 Unmodified _FSNITGIDY_ 0 0 0 ENSG00000203791|ENST00000368836|EEF1AKMT2;ENST00000466270.5_1_10:126450870-126477664:-|nuORF ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7554931640625 2 515.248015 1028.48148 0.23257 0.00011983 3.3562 0.0017293 3.5888 0.0018491 515.7529869777043 55.165 0.20634 54.687 54.567 54.774 -0.47798 15 9 2 0 0 0 0.43463 1 29866 29866 10.824 0 1 1003800 14535 10225 9841 10040 17544 17544 -0.03162529064638875 FSNLEQIL 8 Unmodified _FSNLEQIL_ 0 0 0 REV__nc|ENSG00000186231|Q96NJ5-2|KLHL32 REV__nc|ENSG00000186231|Q96NJ5-2|KLHL32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2618713378906 2 482.260925 962.507297 NaN NaN NaN NaN NaN NaN NaN 89.974 1 89.472 88.972 89.972 -0.50171 0 0 0 0.97444 1 49185 49185 2.8892 0 1 + 14536 23562 9842 10041 17545 17545 0.024543651776411934 FSNLVTHL 8 Unmodified _FSNLVTHL_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 MSMS AL20221201_MKP_PDAC_01 4 465.7725524902344 2 465.75581 929.497067 NaN NaN NaN NaN NaN NaN NaN 37.297 1 33.014 32.514 33.514 -4.2835 0 0 0 0.65904 1 21877 21877 30.225 1.738 1 14537 5481 9843 10042 17546 17546 0.029498022430516357 FSNPYSIEY 9 Unmodified _FSNPYSIEY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.K125M|1|0.19|ENSG00000119917|chr10:89339029-89339029|A/T|missense_variant ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2520751953125 2 560.253297 1118.49204 0.42977 0.00024078 0.13146 7.365E-05 0.56123 0.00031443 560.2528376152818 59.017 0.57167 59.017 58.829 59.4 0 63 24 4 0 0 0 0.1773 1 32845 32845 25.399 9.5521 1 36903000 14538 3479 9844 10043 17547 17547 -0.06246546410238807 FSNPYSIEY 9 Unmodified _FSNPYSIEY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.K125M|1|0.19|ENSG00000119917|chr10:89339029-89339029|A/T|missense_variant ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2535400390625 2 560.253297 1118.49204 0.49677 0.00027832 0.013541 7.5865E-06 0.51031 0.0002859 560.2533353118688 59.716 0.40134 59.225 59.028 59.429 -0.49079 64 19 5 0 0 0 0.10734 1 32505 32505 32.305 14.171 1 86852000 14539 3479 9844 10043 17548 17548 -0.06246546410238807 FSNPYSIEY 9 Unmodified _FSNPYSIEY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.K125M|1|0.19|ENSG00000119917|chr10:89339029-89339029|A/T|missense_variant ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2544555664062 2 560.253297 1118.49204 0.71461 0.00040036 0.25039 0.00014028 0.965 0.00054064 560.2532922964401 59.366 0.28516 59.313 59.134 59.42 -0.053062 26 14 2 0 0 0 0.1773 1 32372 32372 25.399 10.561 1 7020100 14540 3479 9844 10043 17549 17549 -0.06246546410238807 FSNPYSIEY 9 Unmodified _FSNPYSIEY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3;IFIT3|p.K125M|1|0.19|ENSG00000119917|chr10:89339029-89339029|A/T|missense_variant ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2536010742188 2 560.253297 1118.49204 0.74385 0.00041675 -0.68051 -0.00038126 0.063338 3.5485E-05 560.2533181765455 66.812 0.57601 60.637 60.368 60.944 -6.1757 106 32 4 0 0 0 0.08691 1 43534 43534 36.127 14.38 1 556770000 14541 3479 9844 10043 17550 17550 -0.06246546410238807 FSNTDYAVGYM 11 Unmodified _FSNTDYAVGYM_ 0 0 0 ENSG00000133048|ENST00000255409|CHI3L1;ENST00000472064.1_1_1:203149576-203151929:-|nuORF ENSG00000133048|ENST00000255409|CHI3L1 ENSG00000133048|ENST00000255409|CHI3L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7657470703125 2 634.268621 1266.52269 -0.10401 -6.5972E-05 -1.8917 -0.0011999 -1.9957 -0.0012658 634.2677654011707 51.881 0.14818 51.447 51.364 51.512 -0.43367 11 7 2 0 0 0 0.29297 1 28005 28005 7.609 4.6137 1 1863400 14542 4481 9845 10044 17551 17551 -0.09991136087501218 FSPAGMGHLCV 11 Unmodified _FSPAGMGHLCV_ 0 0 0 ENSG00000102683|ENST00000218867|SGCG ENSG00000102683|ENST00000218867|SGCG ENSG00000102683|ENST00000218867|SGCG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7566528320312 2 559.759712 1117.50487 NaN NaN NaN NaN NaN NaN NaN 32.793 1 32.793 32.293 33.293 0 0 0 0 0.77961 1 17158 17158 13.042 3.695 1 14543 2058 9846 10045 17552 17552 -0.04918129823340678 FSPDLYKDF 9 Unmodified _FSPDLYKDF_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20221201_MKP_PDAC_01 4 566.27001953125 2 566.27149 1130.52843 NaN NaN NaN NaN NaN NaN NaN 80.016 1 73.84 73.34 74.34 -6.1757 0 0 0 0.20153 1 52477 52477 30.637 4.3684 1 + 14544 17602 9847 10046 17553 17553 -0.0316166951354262 FSPFGSFVSF 10 Unmodified _FSPFGSFVSF_ 0 0 0 REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2664794921875 2 561.26875 1120.52295 NaN NaN NaN NaN NaN NaN NaN 37.362 1 37.091 36.591 37.591 -0.27133 0 0 0 0.92825 1 19629 19629 6.7232 1.9672 1 + 14545 28380 9848 10047 17554 17554 -0.03249348305325839 FSPFLVTDE 9 Unmodified _FSPFLVTDE_ 0 0 0 nc|ENSG00000109943|O95727-2|CRTAM nc|ENSG00000109943|O95727-2|CRTAM nc|ENSG00000109943|O95727-2|CRTAM MSMS AL20221201_MKP_PDAC_01 4 352.1731872558594 3 352.174569 1053.50188 NaN NaN NaN NaN NaN NaN NaN 21.304 1 18.569 18.069 19.069 -2.7348 0 0 0 0.10545 1 11397 11397 38.176 13.185 1 14546 16116 9849 10048 17555 17555 -0.022733584048410194 FSPFVLVII 9 Unmodified _FSPFVLVII_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.8212890625 2 517.817879 1033.6212 0.46169 0.00023907 3.1785 0.0016459 3.6402 0.001885 517.8199430430874 46.399 0.3885 46.063 45.881 46.27 -0.33664 34 19 2 0 0 0 0.06187 1 24916 24916 42.095 3.9434 1 9591800 14547 3966 9850 10049 17556 17556 0.10573880010520043 FSPGHPPAETC 11 Unmodified _FSPGHPPAETC_ 0 0 0 nc|ENSG00000061938|Q07912-2|TNK2 nc|ENSG00000061938|Q07912-2|TNK2 nc|ENSG00000061938|Q07912-2|TNK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2608642578125 2 571.750398 1141.48624 -0.21258 -0.00012154 0.92434 0.00052849 0.71177 0.00040695 571.7509795036988 31.883 0.38187 31.883 31.661 32.043 0 28 18 2 0 0 0 0.29698 1 16515 16515 8.7454 2.0222 1 3446700 14548 16037 9851 10050 17557 17557 -0.07883968193550572 FSPHGSPHF 9 Unmodified _FSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7369384765625 2 506.735409 1011.45626 -0.62377 -0.00031609 2.2374 0.0011338 1.6137 0.0008177 506.73655028047364 34.096 0.22807 33.904 33.77 33.998 -0.19131 15 8 2 0 0 0 0.14602 1 17822 17822 28.487 19.894 1 1402900 14549 12510 9852 10051 17558 17558 -0.04900539076561472 FSPHGSPHF 9 Unmodified _FSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7353210449219 2 506.735409 1011.45626 0.26235 0.00013294 0.37172 0.00018836 0.63407 0.0003213 506.7354909718191 33.827 0.21109 33.856 33.72 33.931 0.028931 19 8 3 0 0 0 0.012148 1 17802 17802 74.423 36.449 1 2661100 14550 12510 9852 10051 17559 17559 -0.04900539076561472 FSPHGSPHF 9 Unmodified _FSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 506.7359313964844 2 506.735409 1011.45626 NaN NaN NaN NaN NaN NaN NaN 37.962 1 33.593 33.093 34.093 -4.3689 0 0 0 0.0083389 1 22339 22339 96.285 58.311 1 14551 12510 9852 10051 17560 17560 -0.04900539076561472 FSPISAVRVQ 10 Unmodified _FSPISAVRVQ_ 0 0 0 REV__ENST00000584712.5_1_17:7476159-7478717:+|nuORF REV__ENST00000584712.5_1_17:7476159-7478717:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3138427734375 2 552.314023 1102.61349 NaN NaN NaN NaN NaN NaN NaN 88.259 1 88.312 87.812 88.812 0.053352 0 0 0 0.94014 1 49097 49097 6.2058 0 1 + 14552 29058 9853 10052 17561 17561 0.06629120742945815 FSPLQSLWEEF 11 Unmodified _FSPLQSLWEEF_ 0 0 0 nc|ENSG00000235865|Q9NRJ2|GSN-AS1 nc|ENSG00000235865|Q9NRJ2|GSN-AS1 nc|ENSG00000235865|Q9NRJ2|GSN-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.8330688476562 2 691.834985 1381.65542 NaN NaN NaN NaN NaN NaN NaN 76.353 1 76.353 75.853 76.853 0 0 0 0 0.93893 1 42456 42456 3.2813 0 1 14553 16560 9854 10053 17562 17562 -0.02014368359209584 FSPMNQHFL 9 Unmodified _FSPMNQHFL_ 0 0 0 nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7655029296875 2 560.765852 1119.51715 NaN NaN NaN NaN NaN NaN NaN 86.623 1 86.681 86.181 87.181 0.05822 0 0 0 0.57317 1 48115 48115 13.508 0 1 14554 8521 9855 10054 17563 17563 -0.037827700886509774 FSPNRHPAG 9 Unmodified _FSPNRHPAG_ 0 0 0 REV__ENST00000530149.1_1_11:210447-210663:+|nuORF REV__ENST00000530149.1_1_11:210447-210663:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.7443542480469 2 491.746308 981.478063 NaN NaN NaN NaN NaN NaN NaN 49.156 1 43.76 43.26 44.26 -5.3961 0 0 0 0.39043 1 30689 30689 20.454 1.0146 1 + 14555 28436 9856 10055 17564 17564 -0.013417343280025307 FSPRQISAL 9 Unmodified _FSPRQISAL_ 0 0 0 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.7881774902344 2 509.787641 1017.56073 0.61101 0.00031148 -0.4537 -0.00023129 0.1573 8.0191E-05 509.7873112521082 59.236 0.26215 59.182 59.011 59.273 -0.053062 29 12 3 0 0 0 0.08691 1 32236 32236 36.127 1.195 1 11533000 14556 3773 9857 10056 17565 17565 0.05265162680132107 FSPRWPYTE 9 Unmodified _FSPRWPYTE_ 0 0 0 REV__nc|ENSG00000122145|Q9Y458-2|TBX22 REV__nc|ENSG00000122145|Q9Y458-2|TBX22 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.537841796875 3 394.857463 1181.55056 0.16861 6.6576E-05 0.82282 0.0003249 0.99143 0.00039147 394.8577715559133 48.639 0.21901 48.595 48.455 48.674 -0.04369 22 10 3 0 0 0 0.21834 1 26196 26196 0.96228 0.33545 1 2472200 + 14557 19331 9858 10057 17566 17566 -0.0329544504511432 FSQALQHA 8 Unmodified _FSQALQHA_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2308349609375 2 451.229959 900.445365 0.71124 0.00032093 0.9902 0.00044681 1.7014 0.00076774 451.23032160890955 59.394 0.60312 59.341 58.971 59.574 -0.053062 58 30 3 0 0 0 0.80232 1 32391 32391 5.2307 2.6532 1 21990000 14558 5074 9859 10058 17567 17567 -0.008839414508656773 FSQCEVWFF 9 Unmodified _FSQCEVWFF_ 0 0 0 REV__ENST00000529230.5_1_11:46802011-46804862:-|nuORF REV__ENST00000529230.5_1_11:46802011-46804862:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7615356445312 2 596.760235 1191.50592 NaN NaN NaN NaN NaN NaN NaN 57.616 1 57.616 57.116 58.116 0 0 0 0 0.57317 1 32065 32065 13.508 0.97634 1 + 14559 28420 9860 10059 17568 17568 -0.08217592182791122 FSQGWLQNY 9 Unmodified _FSQGWLQNY_ 0 0 0 ENST00000540210.5_1_10:70502250-70506946:+|nuORF ENST00000540210.5_1_10:70502250-70506946:+|nuORF ENST00000540210.5_1_10:70502250-70506946:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7730102539062 2 571.766906 1141.51926 0.69027 0.00039468 0.17751 0.00010149 0.86778 0.00049617 571.766560360884 46.391 0.39103 46.054 45.84 46.231 -0.33664 87 19 7 0 0 0 0.34999 1 24763 24763 14.838 2.3067 1 119220000 14560 15029 9861 10060 17569 17569 -0.045840180791856255 FSQHVNLQAF 10 Unmodified _FSQHVNLQAF_ 0 0 0 REV__ENST00000526343.5_1_11:102100776-102101010:+|nuORF REV__ENST00000526343.5_1_11:102100776-102101010:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2997436523438 2 595.80128 1189.58801 0.30874 0.00018395 0.52399 0.00031219 0.83273 0.00049614 595.800985255772 76.287 0.21961 75.808 75.639 75.858 -0.47945 13 8 2 0 0 0 0.23566 1 41750 41750 7.2892 2.0586 1 431460 + 14561 28368 9862 10061 17570 17570 0.0007964622052440973 FSQLAQTQF 9 Unmodified _FSQLAQTQF_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.771484375 2 535.269281 1068.52401 1.5363 0.00082233 -0.35165 -0.00018823 1.1846 0.0006341 535.7703615367049 100.92 0.16071 94.743 94.67 94.831 -6.1757 19 9 3 0 0 0 0.39863 1 67610 67610 12.532 0 1 33806000 + 14562 20157 9863 10062 17571 17571 -0.00751133936455517 FSQNVELL 8 Unmodified _FSQNVELL_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000481483.1_1_7:142988711-142991459:+|nuORF;nc|ENSG00000106144|P42575-3|CASP2 ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7514343261719 2 475.2531 948.491647 0.51003 0.0002424 -0.50863 -0.00024173 0.0014051 6.678E-07 475.2533685380216 47.374 0.32499 47.374 47.212 47.537 0 27 14 2 0 0 0 0.77907 1 25874 25874 10.183 0 1 4612500 14563 2403 9864 10063 17572 17572 0.01534078660574778 FSQRMNLTV 9 Unmodified _FSQRMNLTV_ 0 0 0 nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2840576171875 2 548.284408 1094.55426 0.32289 0.00017704 -0.67125 -0.00036804 -0.34836 -0.000191 548.2839178731829 60.899 0.24097 60.856 60.726 60.967 -0.04351 19 11 2 0 0 0 0.28023 1 33225 33225 18.146 0 1 5505400 14564 10027 9865 10064 17573 17573 0.01076901457099666 FSQRSNLMQHR 11 Unmodified _FSQRSNLMQHR_ 0 0 0 nc|ENSG00000121417|Q13398-6|ZNF211;nc|ENSG00000121417|Q13398|ZNF211;nc|ENSG00000121417|Q13398-4|ZNF211;nc|ENSG00000121417|Q13398-3|ZNF211;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000121417|Q13398-8|ZNF211;nc|ENSG00000121417|Q13398-5|ZNF211;nc|ENSG00000121417|Q13398-2|ZNF211 nc|ENSG00000121417|Q13398-6|ZNF211 nc|ENSG00000121417|Q13398-6|ZNF211 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 702.3514404296875 2 702.351677 1402.6888 0.44932 0.00031558 -0.87836 -0.00061692 -0.42903 -0.00030133 702.3509554770624 60.651 0.28889 60.607 60.457 60.745 -0.04351 36 14 3 0 0 0 0.30985 1 33056 33056 26.268 0 1 27440000 14565 3583 9866 10065 17574 17574 0.003563549317050274 FSQSFSGESF 10 Unmodified _FSQSFSGESF_ 0 0 0 REV__nc|ENSG00000116852|O75037-3|KIF21B REV__nc|ENSG00000116852|O75037-3|KIF21B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7403564453125 2 561.740554 1121.46655 0.44271 0.00024869 -0.73616 -0.00041353 -0.29345 -0.00016484 561.7402945350232 69.147 0.39185 69.147 68.934 69.326 0 48 17 4 0 0 0 0.52097 1 38558 38558 15.248 2.7169 1 3280300 + 14566 19068 9867 10066 17575 17575 -0.08932020932661544 FSREDLVWY 9 Unmodified _FSREDLVWY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.7933349609375 2 607.795663 1213.57677 0.20317 0.00012349 -0.44692 -0.00027164 -0.24375 -0.00014815 607.7951675889831 65.41 0.25077 64.926 64.77 65.021 -0.48428 18 11 2 0 0 0 0.30202 1 35694 35694 17.113 5.4726 1 2754800 14567 16188 9868 10067 17576 17576 -0.02147175873597007 FSREDLVWY 9 Unmodified _FSREDLVWY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7987670898438 2 607.795663 1213.57677 0.3994 0.00024275 1.4215 0.00086397 1.8209 0.0011067 607.7966388054408 80.668 0.38248 74.492 74.278 74.66 -6.1757 33 20 2 0 0 0 0.085319 1 52865 52865 36.506 17.249 1 17468000 14568 16188 9868 10067 17577 17577 -0.02147175873597007 FSREDQAGKT 10 Unmodified _FSREDQAGKT_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000535284.1_1_16:57093337-57095444:+|nuORF;ENST00000538930.5_1_16:57075247-57096263:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MSMS AL20221201_MKP_PDAC_01 4 379.8780212402344 3 380.18776 1137.54145 NaN NaN NaN NaN NaN NaN NaN 44.238 1 39.386 38.886 39.886 -4.852 0 0 0 0.89532 1 26980 26980 7.4771 0 1 14569 5275 9869 10068 17578 17578 -0.02181838401429559 FSREEWGLLGP 11 Unmodified _FSREEWGLLGP_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883361816406 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 72.175 1 72.175 71.675 72.675 0 0 0 0 0.93933 1 40191 40191 1.2148 0.10508 1 14570 8122 9870 10069 17579 17579 0.007201845634881465 FSRFGEVSD 9 Unmodified _FSRFGEVSD_ 0 0 0 nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;ENST00000542613.5_1_9:95085577-95087599:-|nuORF;ENST00000535649.1_1_9:95085672-95087599:-|nuORF;ENST00000538215.5_1_9:95082633-95087599:-|nuORF;ENST00000543985.5_1_9:95082633-95087599:-|nuORF nc|ENSG00000198000|Q76FK4-4|NOL8 nc|ENSG00000198000|Q76FK4-4|NOL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.24267578125 2 522.243264 1042.47197 -0.039334 -2.0542E-05 0.0063995 3.3421E-06 -0.032934 -1.72E-05 522.2431137372845 33.38 0.20727 33.409 33.295 33.503 0.028934 16 8 3 0 0 0 0.25681 1 17545 17545 19.257 3.4098 1 2169700 14571 10035 9871 10070 17580 17580 -0.04756297350195382 FSRFTNLSDF 10 Unmodified _FSRFTNLSDF_ 0 0 0 REV__ENST00000562915.1_1_16:58019099-58019846:+|nuORF REV__ENST00000562915.1_1_16:58019099-58019846:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.2974853515625 2 617.29857 1232.58259 -0.011727 -7.2388E-06 -0.68961 -0.0004257 -0.70134 -0.00043294 617.2974512040026 51.564 0.22108 51.146 51.041 51.262 -0.41826 28 11 3 0 0 0 0.29752 1 27781 27781 27.629 0 1 8762700 + 14572 21492 9872 10071 17581 17581 -0.02440077361961812 FSRGASFAL 9 Unmodified _FSRGASFAL_ 0 0 0 REV__ENST00000553852.1_1_14:35515838-35522488:+|nuORF REV__ENST00000553852.1_1_14:35515838-35522488:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.9568481445312 2 478.253434 954.492316 0.64803 0.00030992 0.13491 6.4519E-05 0.78294 0.00037444 478.2535046106981 44.623 0.7876 39.771 39.461 40.249 -4.852 88 58 2 0 0 0 0.07087 1 27596 27596 39.95 1.9757 1 25047000 + 14573 28740 9873 10072 17582 17582 0.01324918100283412 FSRKHFRICYM 11 Unmodified _FSRKHFRICYM_ 0 0 0 ENST00000374446.6_1_10:44053538-44053610:-|nuORF ENST00000374446.6_1_10:44053538-44053610:-|nuORF ENST00000374446.6_1_10:44053538-44053610:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7728271484375 3 496.584803 1486.73258 1.749 0.00086855 1.4212 0.00070573 3.1702 0.0015743 496.5855089628469 47.625 0.29039 42.391 42.243 42.534 -5.2339 22 16 2 0 0 0 0.30445 1 29521 29521 2.4348 0 1 8892400 14574 12445 9874 10073 17583 17583 0.008682481045070745 FSRNQLGN 8 Unmodified _FSRNQLGN_ 0 0 0 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 MSMS AL20221201_MKP_PDAC_01 4 468.2383422851562 2 468.238316 934.462078 NaN NaN NaN NaN NaN NaN NaN 27.72 1 24.684 24.184 25.184 -3.0365 0 0 0 0.54148 1 15384 15384 37.974 3.5723 1 14575 2847 9875 10074 17584 17584 -0.007774405649001892 FSRQHMRWLW 10 Unmodified _FSRQHMRWLW_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-3|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.9104919433594 3 482.911907 1445.71389 NaN NaN NaN NaN NaN NaN NaN 29.871 1 29.871 29.371 30.371 0 0 0 0 0.94985 1 15496 15496 5.7834 3.8771 1 14576 7271 9876 10075 17585 17585 0.008864545249480216 FSRQHSACI 9 Unmodified _FSRQHSACI_ 0 0 0 REV__ENSG00000140968|ENST00000268638|IRF8 REV__ENSG00000140968|ENST00000268638|IRF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7516479492188 2 524.753276 1047.492 NaN NaN NaN NaN NaN NaN NaN 62.105 1 62.105 61.605 62.605 0 0 0 0 0.7453 1 34632 34632 7.9102 2.1783 1 + 14577 20506 9877 10076 17586 17586 -0.0298482489122307 FSRRFAELF 9 Unmodified _FSRRFAELF_ 0 0 0 ENSG00000178188|ENST00000684370|SH2B1;nc|ENSG00000178188|Q9NRF2-2|SH2B1;nc|ENSG00000178188|Q9NRF2-3|SH2B1 ENSG00000178188|ENST00000684370|SH2B1 ENSG00000178188|ENST00000684370|SH2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5452270507812 3 391.545219 1171.61383 -0.21068 -8.2491E-05 0.74694 0.00029246 0.53626 0.00020997 391.54556351208277 30.554 0.30283 30.584 30.456 30.759 0.030104 30 13 3 0 0 0 0.60664 1 16067 16067 0.96228 0.18574 1 4179000 14578 8734 9878 10077 17587 17587 0.0348854046278575 FSRRKIPWQQN 11 Unmodified _FSRRKIPWQQN_ 0 0 0 ENSG00000152580|ENST00000282466|IGSF10 ENSG00000152580|ENST00000282466|IGSF10 ENSG00000152580|ENST00000282466|IGSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 730.3973999023438 2 730.399484 1458.78442 0.042464 3.1016E-05 -0.97002 -0.0007085 -0.92756 -0.00067749 730.3983378199226 59.911 0.21218 59.421 59.333 59.545 -0.49079 19 10 2 0 0 0 0.72131 1 32593 32593 4.897 3.4151 1 3341100 14579 6199 9879 10078 17588 17588 0.07337451114290161 FSRRLFFF 8 Unmodified _FSRRLFFF_ 0 0 0 REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|18|2|anti-sense REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|18|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3076782226562 2 560.308544 1118.60253 0.39755 0.00022275 -3.4688 -0.0019436 -3.0712 -0.0017208 560.3063037965943 29.728 0.24076 29.758 29.653 29.894 0.030106 13 9 2 0 0 0 0.80447 1 15546 15546 2.5775 0 1 1464300 + 14580 16714 9880 10079 17589 17589 0.04797763159308488 FSRRRRFD 8 Unmodified _FSRRRRFD_ 0 0 0 REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF REV__ENST00000513635.1_1_5:40681836-40685490:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.2091674804688 3 380.544212 1138.61081 NaN NaN NaN NaN NaN NaN NaN 17.433 1 17.447 16.947 17.947 0.013865 0 0 0 0.97444 1 8667 8667 0.45834 0.18932 1 + 14581 22572 9881 10080 17590 17590 0.04704710128658007 FSRRWSARL 9 Unmodified _FSRRWSARL_ 0 0 0 REV__ENST00000504797.1_1_12:54577600-54582666:-|nuORF REV__ENST00000504797.1_1_12:54577600-54582666:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5089111328125 3 393.55623 1177.64686 -0.0062722 -2.4685E-06 -0.89975 -0.0003541 -0.90602 -0.00035657 393.5558680923166 20.286 0.22006 20.297 20.168 20.388 0.010551 44 12 4 0 0 0 0.21806 1 10275 10275 2.7352 0 1 20552000 + 14582 28053 9882 10081 17591 17591 0.06514167305499541 FSRTSMFPF 9 Unmodified _FSRTSMFPF_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B;ENST00000434214.1_2_9:108456911-108465004:+|nuORF ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2706298828125 2 560.268227 1118.5219 1.0507 0.00058867 0.95362 0.00053428 2.0043 0.001123 560.2710763851582 39.387 0.46938 34.936 34.75 35.219 -4.4509 61 28 3 0 0 0 0.12424 1 23462 23462 30.637 3.7529 1 15691000 14583 1647 9883 10082 17592 17592 -0.03261885945880749 FSRTSSLTY 9 Unmodified _FSRTSSLTY_ 0 0 0 ENSG00000196417|ENST00000396408|ZNF765 ENSG00000196417|ENST00000396408|ZNF765 ENSG00000196417|ENST00000396408|ZNF765 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2671508789062 2 531.266739 1060.51892 0.85481 0.00045413 1.138 0.00060456 1.9928 0.0010587 531.2666978549894 39.363 0.51919 34.912 34.675 35.194 -4.4509 87 31 4 0 0 0 0.05447 1 23292 23292 43.858 2.0187 1 105930000 14584 9815 9884 10083 17593 17593 -0.008914377990549838 FSRYLLGG 8 Unmodified _FSRYLLGG_ 0 0 0 REV__ENSG00000110628|ENST00000649076|SLC22A18 REV__ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7511901855469 2 456.750527 911.486502 0.86759 0.00039627 -0.44689 -0.00020412 0.4207 0.00019216 456.75045712991357 49.37 0.26066 49.326 49.195 49.456 -0.04369 28 12 3 0 0 0 0.50673 1 26641 26641 34.102 1.797 1 10633000 + 14585 18711 9885 10084 17594 17594 0.02721819588634844 FSRYWRRWNRF 11 Unmodified _FSRYWRRWNRF_ 0 0 0 nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-17|CACNA1C nc|ENSG00000151067|Q13936-17|CACNA1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4365234375 2 837.43165 1672.84875 NaN NaN NaN NaN NaN NaN NaN 53.46 1 53.46 52.96 53.96 0 0 0 0 0.9435 1 29634 29634 0 0 1 14586 6088 9886 10085 17595 17595 0.03923650991055183 FSSAAPFG 8 Unmodified _FSSAAPFG_ 0 0 0 REV__ENST00000329687.8_1_4:2935791-2936172:-|nuORF REV__ENST00000329687.8_1_4:2935791-2936172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1878967285156 2 392.187229 782.359904 -0.50109 -0.00019652 1.3452 0.00052757 0.8441 0.00033105 392.18779315204705 25.619 0.27016 25.619 25.447 25.717 0 22 12 2 0 0 0 0.78849 1 13124 13124 9.3474 0 1 1076300 + 14587 25587 9887 10086 17596 17596 -0.03998106636515786 FSSDEEADLE 10 Unmodified _FSSDEEADLE_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1561584472656 3 381.155903 1140.44588 0.70211 0.00026761 0.6289 0.00023971 1.331 0.00050732 381.1561574600557 73.798 0.63924 73.322 72.974 73.613 -0.47588 81 29 3 0 0 0 0.70734 1 40446 40446 2.086 2.086 1 3820200 14588 5400 9888 10087 17597 17597 -0.11872656103014378 FSSDVTHEM 9 Oxidation (M) _FSSDVTHEM(Oxidation (M))_ FSSDVTHEM(1) FSSDVTHEM(78) 0 0 1 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.71826171875 2 534.718764 1067.42298 0.18832 0.0001007 0.072091 3.8548E-05 0.26041 0.00013924 534.7189700775001 24.603 0.31141 21.72 21.541 21.852 -2.8831 24 16 2 0 0 0 0.010818 1 13376 13376 78.149 51.266 1 4787300 14589 3986 9889 10088 17598 17598 712 -0.10803953701429236 FSSDVTHEM 9 Unmodified _FSSDVTHEM_ 0 0 0 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7225341796875 2 526.721307 1051.42806 0.73929 0.0003894 0.26227 0.00013814 1.0016 0.00052754 526.7211534834134 38.316 0.31531 33.947 33.795 34.11 -4.3689 32 18 2 0 0 0 0.070838 1 22532 22532 39.957 13.074 1 17863000 14590 3986 9889 10089 17599 17599 -0.09559649838820405 FSSFDEKNWF 10 Unmodified _FSSFDEKNWF_ 0 0 0 REV__ENSG00000138111|ENST00000238936|MFSD13A REV__ENSG00000138111|ENST00000238936|MFSD13A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.7907104492188 2 653.790578 1305.5666 NaN NaN NaN NaN NaN NaN NaN 94.985 1 94.617 94.117 95.117 -0.36814 0 0 0 0.98914 1 51886 51886 1.8442 0 1 + 14591 20304 9890 10090 17600 17600 -0.07395783598894923 FSSFFMEMEY 10 Unmodified _FSSFFMEMEY_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.843505859375 3 439.843726 1316.50935 NaN NaN NaN NaN NaN NaN NaN 3.819 1 3.7469 3.2469 4.2469 -0.072029 0 0 0 1.0048 1 1884 1884 0.13989 0 1 14592 6658 9891 10091 17601 17601 -0.1362471019106124 FSSFFMEMEY 10 Unmodified _FSSFFMEMEY_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8434753417969 3 439.843726 1316.50935 NaN NaN NaN NaN NaN NaN NaN 6.1962 1 6.2051 5.7051 6.7051 0.0089307 0 0 0 1.0061 1 3111 3111 0 0 1 14593 6658 9891 10091 17602 17602 -0.1362471019106124 FSSFHFHF 8 Unmodified _FSSFHFHF_ 0 0 0 REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF REV__ENST00000396522.6_1_14:21967741-21972178:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.4959106445312 3 352.495977 1054.4661 1.9356 0.00068228 -0.3715 -0.00013095 1.5641 0.00055132 352.4956874822682 33.618 0.34983 29.633 29.525 29.875 -3.9853 35 19 2 0 0 0 0.76859 1 19300 19300 7.9102 3.3813 1 14148000 + 14594 26510 9892 10092 17603 17603 -0.058953510711944546 FSSFTVFADP 10 Unmodified _FSSFTVFADP_ 0 0 0 REV__nc|ENSG00000042832|P01266-2|TG REV__nc|ENSG00000042832|P01266-2|TG MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.5387878417969 3 373.178202 1116.51278 1.0804 0.00040319 1.3681 0.00051055 2.4486 0.00091375 373.17866284191064 44.056 0.2719 39.291 39.126 39.398 -4.7648 26 17 2 0 0 0 0.23325 1 26766 26766 3.3196 2.2482 1 7130300 + 14595 17209 9893 10093 17604 17604 -0.04081956030586298 FSSFVVCLAP 10 Unmodified _FSSFVVCLAP_ 0 0 0 REV__ENSG00000206579|ENST00000327381|XKR4 REV__ENSG00000206579|ENST00000327381|XKR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2747802734375 2 535.272978 1068.5314 0.99279 0.00053141 0.28602 0.0001531 1.2788 0.00068451 535.2732493297431 88.599 0.7354 82.423 82.043 82.779 -6.1757 105 40 3 0 0 0 0.39779 1 58337 58337 21.747 4.8044 1 53452000 + 14596 24262 9894 10094 17605 17605 -0.00012117660389776574 FSSGFAAIL 9 Unmodified _FSSGFAAIL_ 0 0 0 REV__ENSG00000142583|ENST00000377424|SLC2A5 REV__ENSG00000142583|ENST00000377424|SLC2A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.4832153320312 1 912.482545 911.475269 0.11515 0.00010508 0.59623 0.00054405 0.71139 0.00064913 912.4836707605601 86.482 0.25652 85.979 85.833 86.089 -0.50319 15 10 2 0 0 0 0.5029 1 47301 47301 7.2892 1.5288 1 513450 + 14597 20580 9895 10095 17606 17606 0.01598997494465948 FSSILNFV 8 Unmodified _FSSILNFV_ 0 0 0 REV__ENSG00000181752|ENST00000313447|OR8K5 REV__ENSG00000181752|ENST00000313447|OR8K5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 926.0108032226562 1 926.498195 925.490919 0.72093 0.00066794 -0.91707 -0.00084966 -0.19614 -0.00018172 926.4973215437325 80.954 0.42701 80.461 80.227 80.654 -0.49248 59 20 4 0 0 0 0.6895 1 44242 44242 18.135 0 1 22596000 + 14598 23221 9896 10096 17607 17607 0.025192840115209947 FSSKRCLEWF 10 Unmodified _FSSKRCLEWF_ 0 0 0 nc|ENSG00000109184|Q92564-2|DCUN1D4;ENSG00000109184|ENST00000334635|DCUN1D4;nc|ENSG00000109184|Q92564-3|DCUN1D4;ENST00000511675.5_1_4:52709342-52744085:+|nuORF nc|ENSG00000109184|Q92564-2|DCUN1D4 nc|ENSG00000109184|Q92564-2|DCUN1D4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 53.55 1 53.55 53.05 54.05 0 0 0 0 0.99091 1 29690 29690 0.69767 0 1 14599 2639 9897 10097 17608 17608 -0.016068539630396117 FSSLTLWGY 9 Unmodified _FSSLTLWGY_ 0 0 0 ENST00000604683.1_1_5:68645870-68646032:+|nuORF ENST00000604683.1_1_5:68645870-68646032:+|nuORF ENST00000604683.1_1_5:68645870-68646032:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.744873046875 2 537.26875 1072.52295 0.36279 0.00019492 -1.3994 -0.00075184 -1.0366 -0.00055692 537.2682336581837 57.491 0.10113 57.002 56.923 57.024 -0.48974 7 4 2 0 0 0 0.18521 1 31244 31244 16.942 6.8684 1 1240200 14600 15840 9898 10098 17609 17609 -0.010413483053298478 FSSMDKMLL 9 Unmodified _FSSMDKMLL_ 0 0 0 REV__ENSG00000128313|ENST00000249044|APOL5 REV__ENSG00000128313|ENST00000249044|APOL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2647705078125 2 536.264296 1070.51404 1.2493 0.00066994 -0.9275 -0.00049738 0.32177 0.00017255 536.2637706279963 64.558 0.51675 58.382 58.15 58.666 -6.1757 47 28 2 0 0 0 0.12424 1 41763 41763 30.637 2.1497 1 22286000 + 14601 19608 9899 10099 17610 17610 -0.018397812576722572 FSSNIMAILM 10 Unmodified _FSSNIMAILM_ 0 0 0 REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1924133300781 3 376.192689 1125.55624 NaN NaN NaN NaN NaN NaN NaN 17.003 1 17.008 16.508 17.508 0.0050564 0 0 0 0.98914 1 8555 8555 0.77653 0.14971 1 + 14602 20257 9900 10100 17611 17611 -0.001518058493047647 FSSPLLEQV 9 Unmodified _FSSPLLEQV_ 0 0 0 REV__ENSG00000158825|ENST00000375071|CDA REV__ENSG00000158825|ENST00000375071|CDA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3163146972656 2 510.274032 1018.53351 0.51856 0.00026461 3.2594 0.0016632 3.7779 0.0019278 510.2756868907347 75.309 0.22417 74.832 74.696 74.92 -0.47714 15 10 2 0 0 0 0.17275 1 41214 41214 21.747 10.106 1 1282000 + 14603 21445 9901 10101 17612 17612 0.02498634349092299 FSSQARYIYKS 11 Unmodified _FSSQARYIYKS_ 0 0 0 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 450.2778015136719 3 450.56646 1348.67755 0.93009 0.00041907 1.2397 0.00055858 2.1698 0.00097765 450.90160927064534 34.379 0.34501 30.284 30.128 30.473 -4.0951 31 19 2 0 0 0 0.30515 1 19911 19911 3.8459 3.34 1 14252000 + 14604 29690 9902 10102 17613 17613 0.01715856109217384 FSSQLVSIF 9 Unmodified _FSSQLVSIF_ 0 0 0 REV__ENSG00000244694|ENST00000339488|PTCHD4 REV__ENSG00000244694|ENST00000339488|PTCHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.276611328125 2 514.276575 1026.5386 0.12361 6.357E-05 0.4434 0.00022803 0.56701 0.0002916 514.2767025687963 77.027 0.59505 70.851 70.504 71.1 -6.1757 72 32 3 0 0 0 0.022193 1 50451 50451 61.357 0.96792 1 66505000 + 14605 24485 9903 10103 17614 17614 0.026389382116803972 FSSRQPPQY 9 Unmodified _FSSRQPPQY_ 0 0 0 REV__ENSG00000159496|ENST00000290691|RGL4 REV__ENSG00000159496|ENST00000290691|RGL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2755126953125 2 555.272355 1108.53016 NaN NaN NaN NaN NaN NaN NaN 54.944 1 54.876 54.376 55.376 -0.068737 0 0 0 0.41346 1 29851 29851 19.257 1.1106 1 + 14606 21487 9904 10104 17615 17615 -0.019766157048934474 FSSSQPIGVTK 11 Unmodified _FSSSQPIGVTK_ 0 0 0 ENSG00000274070|ENST00000616305|CASTOR2 ENSG00000274070|ENST00000616305|CASTOR2 ENSG00000274070|ENST00000616305|CASTOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8089599609375 2 575.808771 1149.60299 0.31956 0.00018401 0.20982 0.00012081 0.52938 0.00030482 575.8090133702577 43.424 0.21881 43.113 42.989 43.207 -0.31039 22 10 3 0 0 0 0.10451 1 23099 23099 41.956 0.11592 1 11145000 14607 10898 9905 10105 17616 17616 0.03417093297844076 FSSSQPIGVTK 11 Unmodified _FSSSQPIGVTK_ 0 0 0 ENSG00000274070|ENST00000616305|CASTOR2 ENSG00000274070|ENST00000616305|CASTOR2 ENSG00000274070|ENST00000616305|CASTOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.808349609375 2 575.808771 1149.60299 0.71364 0.00041092 -0.58834 -0.00033877 0.1253 7.2148E-05 575.8084721750637 43.065 0.25192 43.049 42.912 43.164 -0.015671 29 11 3 0 0 0 0.16515 1 23055 23055 34.932 0.53034 1 12436000 14608 10898 9905 10105 17617 17617 0.03417093297844076 FSSTSLGHL 9 Unmodified _FSSTSLGHL_ 0 0 0 ENST00000466994.5_1_1:6267553-6267979:+|nuORF;nc|ENSG00000158286|Q6ZRF8-2|RNF207 ENST00000466994.5_1_1:6267553-6267979:+|nuORF ENST00000466994.5_1_1:6267553-6267979:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 474.7438049316406 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 88.467 1 82.292 81.792 82.792 -6.1757 0 0 0 0.10545 1 58370 58370 42.095 2.1372 1 14609 13766 9906 10106 17618 17618 -0.004590919992324416 FSSVLDTVL 9 Unmodified _FSSVLDTVL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF;ENST00000563629.1_1_16:50783909-50820919:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.5281982421875 1 980.529889 979.522613 0.091646 8.9862E-05 0.51989 0.00050977 0.61154 0.00059963 980.5304505918157 81.513 0.24342 81.513 81.37 81.613 0 15 10 2 0 0 0 0.30562 1 45201 45201 16.942 4.4107 1 431880 14610 1373 9907 10107 17619 17619 0.032032319747941074 FSSVQPTNWP 10 Unmodified _FSSVQPTNWP_ 0 0 0 REV__nc|ENSG00000229086|A6NM66|LINC01548 REV__nc|ENSG00000229086|A6NM66|LINC01548 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7814331054688 2 581.780013 1161.54547 0.2768 0.00016104 -0.185 -0.00010763 0.091801 5.3408E-05 581.7797684745624 53.511 0.15469 53.447 53.326 53.481 -0.063423 12 7 2 0 0 0 0.32072 1 29011 29011 26.268 0.86883 1 3663800 + 14611 29956 9908 10108 17620 17620 -0.02883748907743211 FSSVRSRNRHS 11 Unmodified _FSSVRSRNRHS_ 0 0 0 ENSG00000169594|ENST00000345382|BNC1;ENSG00000173068|ENST00000380672|BNC2;ENST00000418777.5_1_9:16418989-16435690:-|nuORF ENSG00000169594|ENST00000345382|BNC1;ENSG00000173068|ENST00000380672|BNC2;ENST00000418777.5_1_9:16418989-16435690:-|nuORF ENSG00000173068|ENST00000380672|BNC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.8499145507812 2 666.847616 1331.68068 -0.41011 -0.00027348 2.52 0.0016805 2.1099 0.001407 666.849160705669 44.583 0.097733 44.583 44.512 44.61 0 8 4 2 0 0 0 0.5229 1 24259 24259 15.248 2.206 1 5316700 14612 7888;8284;13075 9909 10109 17621 17621 0.028105440066156007 FSSVSSVVH 9 Unmodified _FSSVSSVVH_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MSMS AL20221201_MKP_PDAC_01 4 474.7441711425781 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 88.279 1 82.103 81.603 82.603 -6.1757 0 0 0 0.12337 1 58233 58233 39.957 1.9833 1 + 14613 19669 9910 10110 17622 17622 -0.004590919992324416 FSSVVPPPP 9 Unmodified _FSSVVPPPP_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.4983520507812 1 926.498195 925.490919 0.30224 0.00028002 -0.66693 -0.00061791 -0.36469 -0.00033789 926.4972144971622 80.461 0.20266 80.461 80.365 80.568 0 15 9 2 0 0 0 0.49272 1 44677 44677 7.9102 0 1 410110 + 14614 19457 9911 10111 17623 17623 0.025192840115209947 FSSYNPGEPN 10 Unmodified _FSSYNPGEPN_ 0 0 0 nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41 nc|ENSG00000089682|Q96IZ5-2|RBM41 nc|ENSG00000089682|Q96IZ5-2|RBM41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.239990234375 2 556.238178 1110.4618 NaN NaN NaN NaN NaN NaN NaN 29.182 1 29.182 28.682 29.682 0 0 0 0 0.64375 1 15107 15107 19.257 3.4098 1 14615 1533 9912 10112 17624 17624 -0.08900905075415722 FSTKCHVHL 9 Unmodified _FSTKCHVHL_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MSMS AL20221201_MKP_PDAC_01 4 357.853515625 3 357.851655 1070.53313 NaN NaN NaN NaN NaN NaN NaN 80.143 1 73.967 73.467 74.467 -6.1757 0 0 0 0.57317 1 52566 52566 8.7454 0.83525 1 + 14616 27458 9913 10113 17625 17625 0.0006893614825003169 FSTKNRIHF 9 Unmodified _FSTKNRIHF_ 0 0 0 REV__ENSG00000138271|ENST00000260843|GPR87 REV__ENSG00000138271|ENST00000260843|GPR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5111083984375 3 383.876969 1148.60908 -0.2495 -9.5778E-05 -0.90758 -0.0003484 -1.1571 -0.00044418 383.87704072193725 33.991 0.17125 33.8 33.718 33.89 -0.19132 10 6 2 0 0 0 0.21242 1 17788 17788 2.9952 0.26005 1 553370 + 14617 20318 9914 10114 17626 17626 0.040716563200248856 FSTLHWRLL 9 Unmodified _FSTLHWRLL_ 0 0 0 ENST00000473720.5_1_2:130913661-130934206:-|nuORF ENST00000473720.5_1_2:130913661-130934206:-|nuORF ENST00000473720.5_1_2:130913661-130934206:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.272216796875 2 586.832383 1171.65021 0.92533 0.00054302 1.6218 0.00095174 2.5472 0.0014948 587.3350811496424 99.473 0.14001 93.297 93.214 93.354 -6.1757 13 8 2 0 0 0 0.19613 1 66189 66189 12.532 3.9383 1 18274000 14618 13924 9915 10115 17627 17627 0.07125417359520725 FSTPCFCRAF 10 Unmodified _FSTPCFCRAF_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5081481933594 3 393.5089 1177.50487 0.86966 0.00034222 -1.075 -0.00042304 -0.20538 -8.0821E-05 393.50827388901376 22.355 0.24281 19.62 19.471 19.714 -2.7348 21 12 2 0 0 0 0.66569 1 12016 12016 3.5871 1.3343 1 5287200 14619 3344 9916 10116 17628 17628 -0.0767812982335272 FSTPILDLF 9 Unmodified _FSTPILDLF_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7850952148438 2 526.786776 1051.559 0.72504 0.00038194 -2.3703 -0.0012487 -1.6453 -0.00086672 526.7848352804014 43.092 0.50871 43.092 42.909 43.418 0 69 25 4 0 0 0 0.41742 1 23447 23447 11.64 1.4569 1 149810000 14620 3276 9917 10117 17629 17629 0.035281088715237274 FSTRLHLWTF 10 Unmodified _FSTRLHLWTF_ 0 0 0 ENST00000255977.6_2_7:140153916-140154039:-|nuORF ENST00000255977.6_2_7:140153916-140154039:-|nuORF ENST00000255977.6_2_7:140153916-140154039:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.3469848632812 2 654.348397 1306.68224 NaN NaN NaN NaN NaN NaN NaN 91.245 1 91.281 90.781 91.781 0.036499 0 0 0 0.96981 1 50754 50754 3.9444 0.3479 1 14621 11174 9918 10118 17630 17630 0.0411678504262909 FSTSFEAG 8 Unmodified _FSTSFEAG_ 0 0 0 REV__ENST00000538304.1_1_12:8540468-8549057:-|nuORF REV__ENST00000538304.1_1_12:8540468-8549057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.3655395507812 1 845.367575 844.360298 0.57762 0.0004883 -0.26546 -0.00022441 0.31216 0.00026389 845.3671628824748 48.393 0.25754 48.349 48.218 48.476 -0.04369 26 12 3 0 0 0 0.46494 1 26077 26077 38.151 6.0342 1 9829700 + 14622 28558 9919 10119 17631 17631 -0.06810731707321338 FSTSPASLCEH 11 Unmodified _FSTSPASLCEH_ 0 0 0 nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-6|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD MSMS AL20221201_MKP_PDAC_01 4 589.7592163085938 2 589.760963 1177.50737 NaN NaN NaN NaN NaN NaN NaN 23.956 1 21.129 20.629 21.629 -2.8273 0 0 0 0.86932 1 13003 13003 8.7454 0 1 14623 4116 9920 10120 17632 17632 -0.07428002884694251 FSTSPASLCEH 11 Unmodified _FSTSPASLCEH_ 0 0 0 nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-6|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD MSMS AL20221201_MKP_PDAC_01 4 589.75830078125 2 589.760963 1177.50737 NaN NaN NaN NaN NaN NaN NaN 25.746 1 22.795 22.295 23.295 -2.9511 0 0 0 0.61053 1 14117 14117 20.415 6.5085 1 14624 4116 9920 10120 17633 17633 -0.07428002884694251 FSTSTRIW 8 Unmodified _FSTSTRIW_ 0 0 0 ENST00000294383.6_1_1:55545316-55547089:-|nuORF ENST00000294383.6_1_1:55545316-55547089:-|nuORF ENST00000294383.6_1_1:55545316-55547089:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2596435546875 2 499.258717 996.50288 0.39987 0.00019964 1.1758 0.00058704 1.5757 0.00078668 499.2591921940652 52.375 0.23343 51.941 51.789 52.023 -0.43367 22 11 3 0 0 0 0.71527 1 28262 28262 15.847 1.0089 1 3174000 14625 11483 9921 10121 17634 17634 0.004489007547022084 FSTSTRIW 8 Unmodified _FSTSTRIW_ 0 0 0 ENST00000294383.6_1_1:55545316-55547089:-|nuORF ENST00000294383.6_1_1:55545316-55547089:-|nuORF ENST00000294383.6_1_1:55545316-55547089:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.258717 996.50288 0.38536 0.00019239 1.4529 0.00072536 1.8382 0.00091776 499.25927665313156 52.031 0.25498 51.973 51.772 52.027 -0.058918 0.015784 0.00019602 NaN 15.847 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 842950 14626 11483 9921 10121 0.004489007547022084 FSTVHEKF 8 Unmodified _FSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MSMS AL20221201_MKP_PDAC_01 4 497.7531127929688 2 497.753267 993.491981 NaN NaN NaN NaN NaN NaN NaN 32.96 1 29.103 28.603 29.603 -3.8562 0 0 0 0.0015191 1 18852 18852 122.18 54.098 1 14627 4659 9922 10122 17635 17635 -0.005025016195759235 FSTWIKLTF 9 Unmodified _FSTWIKLTF_ 0 0 0 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2121276855469 3 381.546337 1141.61718 NaN NaN NaN NaN NaN NaN NaN 34.914 1 34.941 34.441 35.441 0.027401 0 0 0 0.83049 1 18430 18430 2.2828 0.19677 1 14628 5061 9923 10123 17636 17636 0.05203790516770823 FSVASTCSEF 10 Unmodified _FSVASTCSEF_ 0 0 0 nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44;ENST00000529348.1_1_11:130109693-130131768:-|nuORF;nc|ENSG00000196323|Q8NCP5-3|ZBTB44;nc|ENSG00000196323|Q8NCP5-4|ZBTB44;nc|ENSG00000196323|Q8NCP5-2|ZBTB44 nc|ENSG00000196323|Q8NCP5|ZBTB44 nc|ENSG00000196323|Q8NCP5|ZBTB44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.232666015625 2 539.231507 1076.44846 0.16444 8.8669E-05 1.3885 0.0007487 1.5529 0.00083737 539.2323741754232 65.192 0.34248 64.707 64.511 64.854 -0.48428 23 15 2 0 0 0 0.44373 1 35550 35550 19.257 3.4098 1 2431100 14629 9797 9924 10124 17637 17637 -0.0867047917902255 FSVEVSPC 8 Unmodified _FSVEVSPC_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-2|VPS13C REV__nc|ENSG00000129003|Q709C8-2|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.1993408203125 2 434.199479 866.384405 0.37156 0.00016133 -0.44836 -0.00019468 -0.0768 -3.3346E-05 434.1993940732758 59.43 0.31451 59.43 59.262 59.577 0 35 13 3 0 0 0 0.5953 2 33066 33066;33182 26.341 0 1 9226400 + 14630 19645 9925 10125 17638;17639 17638 -0.054132145453195335 FSVEVSPC 8 Unmodified _FSVEVSPC_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-2|VPS13C REV__nc|ENSG00000129003|Q709C8-2|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.1992492675781 2 434.199479 866.384405 0.45955 0.00019953 -0.99152 -0.00043052 -0.53198 -0.00023098 434.19916155034554 59.727 0.34766 59.727 59.555 59.902 0 37 15 3 0 0 0 0.5953 1 33294 33294 26.341 0 1 10386000 + 14631 19645 9925 10125 17640 17640 -0.054132145453195335 FSVIMYEL 8 Unmodified _FSVIMYEL_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.253173828125 2 501.254254 1000.49396 0.41843 0.00020974 -2.6098 -0.0013082 -2.1914 -0.0010984 501.2534696021541 58.886 0.49218 58.886 58.677 59.169 0 31 21 2 0 0 0 0.55032 1 32760 32760 30.225 0 1 19805000 + 14632 19862 9926 10126 17641 17641 -0.006272089259823588 FSVTNPHP 8 Unmodified _FSVTNPHP_ 0 0 0 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant;ENSG00000147251|ENST00000276202|DOCK11 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.7237243652344 2 449.72451 897.434466 NaN NaN NaN NaN NaN NaN NaN 15.289 1 15.295 14.795 15.795 0.0057774 0 0 0 0.96305 1 7613 7613 7.9102 0 1 14633 240 9927 10127 17642 17642 -0.018353438251438092 FSVTSWASL 9 Unmodified _FSVTSWASL_ 0 0 0 ENSG00000185561|ENST00000330676|TLCD2 ENSG00000185561|ENST00000330676|TLCD2 ENSG00000185561|ENST00000330676|TLCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2529602050781 2 499.2531 996.491647 0.43227 0.00021581 -1.612 -0.00080482 -1.1798 -0.00058901 499.2530490702659 64.561 0.32272 64.076 63.908 64.23 -0.48512 22 14 2 0 0 0 0.49272 1 35255 35255 7.9102 0 1 906140 14634 9382 9928 10128 17643 17643 -0.006739213394212129 FSVVPVIDY 9 Unmodified _FSVVPVIDY_ 0 0 0 REV__ENSG00000180611|ENST00000392452|MB21D2 REV__ENSG00000180611|ENST00000392452|MB21D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7797241210938 2 519.778951 1037.54335 0.67243 0.00034951 -0.27494 -0.00014291 0.39749 0.00020661 519.778843847042 92.688 1.1726 86.513 86.02 87.193 -6.1757 223 77 4 0 0 0 0.30562 1 61031 61031 16.942 0 1 201550000 + 14635 23158 9929 10129 17644 17644 0.026078223544800494 FSWFWFRLYWF 11 Unmodified _FSWFWFRLYWF_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MSMS AL20221201_MKP_PDAC_01 4 842.9089965820312 2 842.908622 1683.80269 NaN NaN NaN NaN NaN NaN NaN 52.827 1 47.023 46.523 47.523 -5.8042 0 0 0 0.94307 1 33355 33355 0.30703 0.30703 1 14636 10576 9930 10130 17645 17645 -0.011858069637355584 FSYETFDF 8 Unmodified _FSYETFDF_ 0 0 0 REV__ENST00000285518.10_1_8:6615806-6616025:+|nuORF REV__ENST00000285518.10_1_8:6615806-6616025:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.222412109375 2 528.221465 1054.42838 0.40393 0.00021336 1.4598 0.00077108 1.8637 0.00098444 528.2223912511218 79.057 0.44114 79.057 78.762 79.203 0 72 20 5 0 0 0 0.78849 1 43908 43908 9.3474 0 1 3795000 + 14637 25219 9931 10131 17646 17646 -0.09665906847340011 FSYFDGFDRRF 11 Unmodified _FSYFDGFDRRF_ 0 0 0 REV__ENST00000306100.9_1_4:163084864-163085137:-|nuORF REV__ENST00000306100.9_1_4:163084864-163085137:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2275390625 3 486.226326 1455.65715 -0.037939 -1.8447E-05 -0.90027 -0.00043774 -0.93821 -0.00045618 486.22652165385176 52.103 0.70416 52.103 51.583 52.287 0 54 31 2 0 0 0 0.71036 1 28905 28905 1.3296 0 1 8737000 + 14638 25371 9932 10132 17647 17647 -0.05245314550597868 FSYHYGHFP 9 Unmodified _FSYHYGHFP_ 0 0 0 nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2 nc|ENSG00000159263|Q14190-2|SIM2 nc|ENSG00000159263|Q14190-2|SIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7576293945312 2 577.756341 1153.49813 0.31384 0.00018132 1.682 0.00097179 1.9959 0.0011531 577.757341933506 90.369 0.41917 90.369 90.114 90.533 0 49 25 3 0 0 0 0.57757 1 50051 50051 2.0598 0 1 1801200 14639 6642 9933 10133 17648 17648 -0.07247983388060675 FSYINETSL 9 Unmodified _FSYINETSL_ 0 0 0 REV__ENSG00000072858|ENST00000264852|SIDT1 REV__ENSG00000072858|ENST00000264852|SIDT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2152709960938 2 537.261122 1072.50769 -0.25159 -0.00013517 -2.5184 -0.0013531 -2.77 -0.0014882 537.7607571718461 33.337 0.17922 33.337 33.223 33.402 0 22 8 4 0 0 0 0.18118 1 17463 17463 13.906 3.0821 1 2188300 + 14640 17528 9934 10134 17649 17649 -0.02566259893183087 FSYKRLFR 8 Unmodified _FSYKRLFR_ 0 0 0 REV__nc|ENSG00000133063|Q13231-2|CHIT1 REV__nc|ENSG00000133063|Q13231-2|CHIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8826293945312 3 372.881943 1115.624 1.3014 0.00048525 -0.25527 -9.5185E-05 1.0461 0.00039007 372.88197960480073 90.359 0.37375 84.183 83.951 84.324 -6.1757 57 21 4 0 0 0 0.77186 1 59603 59603 8.1555 2.7528 1 43196000 + 14641 19904 9935 10135 17650 17650 0.07081148188035513 FSYLFLSF 8 Unmodified _FSYLFLSF_ 0 0 0 REV__ENST00000419296.1_1_2:110745934-110746081:+|nuORF REV__ENST00000419296.1_1_2:110745934-110746081:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2611083984375 2 512.262936 1022.51132 0.60192 0.00030834 -3.8788 -0.0019869 -3.2768 -0.0016786 512.2613056013698 81.544 0.35133 81.049 80.834 81.185 -0.4952 22 14 2 0 0 0 0.80143 1 44650 44650 5.7604 0 1 319750 + 14642 26818 9936 10136 17651 17651 0.0009645467132486374 FSYMFILYTIL 11 Unmodified _FSYMFILYTIL_ 0 0 0 ENSG00000204246|ENST00000641090|OR13C3;ENSG00000148136|ENST00000277216|OR13C4;nc|ENSG00000204246|Q8NGS6|OR13C3 ENSG00000204246|ENST00000641090|OR13C3 ENSG00000204246|ENST00000641090|OR13C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2525024414062 3 470.917442 1409.7305 -0.52167 -0.00024566 -0.80527 -0.00037921 -1.3269 -0.00062488 470.9169282089937 16.684 0.1005 16.685 16.637 16.738 0.0010529 45 28 2 0 0 0 0.71728 1 8230 8230 2.6312 0 1 443260 14643 5895 9937 10137 17652 17652 0.04202097847701225 FSYNFYKKYRS 11 Unmodified _FSYNFYKKYRS_ 0 0 0 REV__ENST00000520817.5_1_8:41367772-41367976:+|nuORF REV__ENST00000520817.5_1_8:41367772-41367976:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.920166015625 3 501.585743 1501.7354 -0.25014 -0.00012547 0.43004 0.0002157 0.17989 9.0232E-05 501.58613975215366 36.909 0.30067 36.93 36.747 37.048 0.021545 32 13 3 0 0 0 0.7326 1 19546 19546 0.40827 0 1 3003000 + 14644 28284 9938 10138 17653 17653 0.004601180346526235 FSYRRWFTI 9 Unmodified _FSYRRWFTI_ 0 0 0 ENST00000570439.1_1_17:7249533-7249716:+|nuORF ENST00000570439.1_1_17:7249533-7249716:+|nuORF ENST00000570439.1_1_17:7249533-7249716:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.8924865722656 3 425.892619 1274.65603 NaN NaN NaN NaN NaN NaN NaN 57.073 1 56.588 56.088 57.088 -0.48554 0 0 0 0.86004 1 31014 31014 0.26902 0 1 14645 15477 9939 10139 17654 17654 0.029685158711799886 FSYRWLWWQPW 11 Unmodified _FSYRWLWWQPW_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.9019775390625 2 827.901328 1653.7881 NaN NaN NaN NaN NaN NaN NaN 102.14 1 102.02 101.52 102.52 -0.11613 0 0 0 0.9435 1 55729 55729 0 0 1 14646 75 9940 10140 17655 17655 -0.012638791118661175 FSYSNLKEY 9 Unmodified _FSYSNLKEY_ 0 0 0 ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL;nc|ENSG00000120334|Q8N0S6-3|CENPL;ENST00000496683.5_1_1:173772617-173780437:-|nuORF ENSG00000120334|ENST00000682279|CENPL ENSG00000120334|ENST00000682279|CENPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2769165039062 2 575.774396 1149.53424 0.0017011 9.7943E-07 1.0456 0.00060205 1.0473 0.00060303 575.774716315885 45.197 0.43801 45.197 44.925 45.363 0 70 22 4 0 0 0 0.46501 1 24650 24650 9.3831 0.78985 1 38125000 14647 3512 9941 10141 17656 17656 -0.03454571001839213 FSYVNPQF 8 Unmodified _FSYVNPQF_ 0 0 0 ENSG00000154229|ENST00000413366|PRKCA ENSG00000154229|ENST00000413366|PRKCA ENSG00000154229|ENST00000413366|PRKCA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2395935058594 2 501.239993 1000.46543 NaN NaN NaN NaN NaN NaN NaN 75.368 1 74.891 74.391 75.391 -0.47714 0 0 0 0.97348 1 41256 41256 5.7604 0.52976 1 14648 6308 9942 10142 17657 17657 -0.034781905109070976 FSYWMETY 8 Unmodified _FSYWMETY_ 0 0 0 ENST00000504087.5_1_4:125588593-125588641:-|nuORF ENST00000504087.5_1_4:125588593-125588641:-|nuORF ENST00000504087.5_1_4:125588593-125588641:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1572570800781 3 376.156521 1125.44773 0.49888 0.00018766 1.6451 0.00061883 2.144 0.00080649 376.1570323850485 58.758 0.27102 58.698 58.568 58.839 -0.060719 21 13 2 0 0 0 0.80799 1 32025 32025 1.8442 0.19162 1 1358100 14649 14482 9943 10143 17658 17658 -0.10997273828047582 FTAETSDDL 9 Unmodified _FTAETSDDL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7184753417969 2 499.719287 997.424021 0.19666 9.8274E-05 -0.90985 -0.00045467 -0.7132 -0.0003564 499.71875421908527 78.951 0.95311 78.465 78.059 79.012 -0.48596 72 39 2 0 0 0 0.5029 1 43290 43290 7.2892 0 1 1197500 14650 2666 9944 10144 17659 17659 -0.0747941606088034 FTAGAFSDHMA 11 Unmodified _FTAGAFSDHMA_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7510986328125 2 577.750398 1153.48624 -0.2612 -0.00015091 1.4637 0.00084567 1.2025 0.00069476 577.7511547074163 28.925 0.33999 28.925 28.723 29.063 0 34 16 3 0 0 0 0.65108 1 14989 14989 8.7454 1.6437 1 1180900 14651 678 9945 10145 17660 17660 -0.08435968193543886 FTAGAFSDHMA 11 Unmodified _FTAGAFSDHMA_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7506713867188 2 577.750398 1153.48624 1.1093 0.0006409 -0.066633 -3.8497E-05 1.0427 0.0006024 577.7505094785115 32.281 0.3338 28.425 28.301 28.635 -3.8562 28 19 2 0 0 0 0.48615 1 18432 18432 17.113 1.2657 1 7677300 14652 678 9945 10145 17661 17661 -0.08435968193543886 FTAKVARCI 9 Unmodified _FTAKVARCI_ 0 0 0 REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.7189331054688 2 504.786587 1007.55862 1.0639 0.00053705 -2.4728 -0.0012483 -1.4089 -0.0007112 505.2875322007471 79.212 0.43651 73.036 72.712 73.148 -6.1757 33 23 2 0 0 0 0.18118 1 51761 51761 4.3292 3.6389 1 5860500 + 14653 19616 9946 10146 17662 17662 0.05514410670673442 FTALGRDVQSL 11 Unmodified _FTALGRDVQSL_ 0 0 0 REV__ENST00000361384.6_1_10:115613538-115613757:-|nuORF REV__ENST00000361384.6_1_10:115613538-115613757:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2655639648438 2 603.827495 1205.64044 -1.4772 -0.00089197 0.089999 5.4344E-05 -1.3872 -0.00083763 603.8275901383447 32.484 0.20623 32.484 32.393 32.599 0 24 13 2 0 0 0 0.29923 1 17043 17043 7.609 0 1 13936000 + 14654 25924 9947 10147 17663 17663 0.04584184563486815 FTAPHGPI 8 Unmodified _FTAPHGPI_ 0 0 0 REV__nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 REV__nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2241821289062 2 420.224146 838.433738 1.2197 0.00051255 -0.29325 -0.00012323 0.92645 0.00038932 420.22392555328076 54.79 0.40696 48.924 48.779 49.186 -5.8653 57 24 3 0 0 0 0.41521 1 34754 34754 42.968 16.627 1 38327000 + 14655 23582 9948 10148 17664 17664 0.00805861525805085 FTASEQIYA 9 Unmodified _FTASEQIYA_ 0 0 0 REV__ENSG00000116688|ENST00000235329|MFN2 REV__ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.248779296875 2 515.248015 1028.48148 0.86064 0.00044344 -0.19612 -0.00010105 0.66452 0.00034239 515.2479518073637 57.154 0.5017 51.165 50.98 51.482 -5.9884 52 28 3 0 0 0 0.08691 1 36620 36620 36.127 0.082828 1 66290000 + 14656 19057 9949 10149 17665 17665 -0.03162529064661612 FTAVHPAP 8 Unmodified _FTAVHPAP_ 0 0 0 ENST00000425497.5_1_20:48892267-48894933:+|nuORF;ENST00000445003.5_1_20:48884168-48894933:+|nuORF;ENST00000422459.1_1_20:48892889-48894933:+|nuORF ENST00000425497.5_1_20:48892267-48894933:+|nuORF ENST00000425497.5_1_20:48892267-48894933:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2243041992188 2 420.224146 838.433738 1.2197 0.00051255 -0.29325 -0.00012323 0.92645 0.00038932 420.22392555328076 54.79 0.40696 48.924 48.779 49.186 -5.8653 57 24 3 0 0 0 0.5284 1 34883 34883 32.117 5.7757 1 38327000 14657 13118 9950 10150 17666 17666 0.00805861525805085 FTCAEGECCES 11 Unmodified _FTCAEGECCES_ 0 0 0 ENSG00000069206|ENST00000175238|ADAM7 ENSG00000069206|ENST00000175238|ADAM7 ENSG00000069206|ENST00000175238|ADAM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1179.780395507812 1 1178.37987 1177.3726 0.27705 0.00032647 3.1113 0.0036662 3.3883 0.0039927 1178.3821734871528 87.414 0.10375 87.472 87.444 87.547 0.05822 6 5 2 0 0 0 0.73389 1 48608 48608 1.0715 0.46996 1 30571000 14658 999 9951 10151 17667 17667 -0.20899567413107434 FTCTLAHL 8 Unmodified _FTCTLAHL_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MSMS AL20221201_MKP_PDAC_01 4 453.2315368652344 2 453.231113 904.447674 NaN NaN NaN NaN NaN NaN NaN 43.986 1 39.221 38.721 39.721 -4.7648 0 0 0 0.9249 1 26787 26787 15.768 4.6538 1 + 14659 21984 9952 10152 17668 17668 -0.008372290374154545 FTCVACHP 8 Unmodified _FTCVACHP_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.1893920898438 2 439.188391 876.362229 1.0961 0.00048138 0.14446 6.3446E-05 1.2405 0.00054483 439.18858570799995 32.482 0.32806 28.626 28.447 28.776 -3.8562 29 17 2 0 0 0 0.65867 1 18484 18484 20.871 1.4322 1 7940700 14660 3117 9953 10153 17669 17669 -0.08089717494738125 FTCVACHP 8 Unmodified _FTCVACHP_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MSMS AL20221201_MKP_PDAC_01 4 439.1895446777344 2 439.188391 876.362229 NaN NaN NaN NaN NaN NaN NaN 32.636 1 28.779 28.279 29.279 -3.8562 0 0 0 0.85111 1 18624 18624 20.871 1.4322 1 14661 3117 9953 10153 17670 17670 -0.08089717494738125 FTDAYQEL 8 Unmodified _FTDAYQEL_ 0 0 0 REV__ENSG00000120318|ENST00000239440|ARAP3 REV__ENSG00000120318|ENST00000239440|ARAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.0010375976562 1 986.446553 985.439277 0.33968 0.00033508 -1.3469 -0.0013286 -1.0072 -0.00099354 986.4451428000406 70.955 0.24297 70.478 70.368 70.611 -0.47735 16 10 2 0 0 0 0.79669 1 38800 38800 8.5933 1.304 1 1088100 + 14662 19237 9954 10154 17671 17671 -0.054025044730451555 FTDDSARTF 9 Unmodified _FTDDSARTF_ 0 0 0 ENSG00000125170|ENST00000340099|DOK4 ENSG00000125170|ENST00000340099|DOK4 ENSG00000125170|ENST00000340099|DOK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2406616210938 2 530.240721 1058.46689 0.10584 5.6118E-05 2.2417 0.0011886 2.3475 0.0012447 530.2418695209348 31.022 0.34142 31.022 30.892 31.234 0 40 16 4 0 0 0 0.020316 1 16126 16126 63.227 1.87 1 7165500 14663 3833 9955 10155 17672 17672 -0.06000601212804213 FTDEESRVF 9 Unmodified _FTDEESRVF_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.262451171875 2 565.261653 1128.50875 0.79288 0.00044818 0.49545 0.00028006 1.2883 0.00072824 565.2618367578126 46.046 0.4397 41.091 40.815 41.255 -4.9549 72 28 3 0 0 0 0.0087807 2 28409 28272;28409 106.94 51.437 1 31594000 14664 577 9956 10156 17673;17674 17674 -0.05036045524275323 FTDFKLDGTGY 11 Unmodified _FTDFKLDGTGY_ 0 0 0 nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12 nc|ENSG00000147650|Q9Y561-2|LRP12 nc|ENSG00000147650|Q9Y561-2|LRP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.7991333007812 2 632.298236 1262.58192 0.27234 0.0001722 -0.43256 -0.00027351 -0.16022 -0.00010131 632.2979091546008 52.839 0.22262 52.839 52.657 52.88 0 12 9 2 0 0 0 0.30139 1 29271 29271 5.7319 0.97584 1 2180000 14665 5872 9957 10157 17675 17675 -0.03886916801661755 FTDFLLPML 9 Unmodified _FTDFLLPML_ 0 0 0 nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000096063|Q96SB4-4|SRPK1 nc|ENSG00000096063|Q96SB4-4|SRPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7900390625 2 548.791004 1095.56745 0.67041 0.00036792 -2.0318 -0.001115 -1.3614 -0.00074712 548.7905243811393 74.555 0.15817 74.079 73.974 74.133 -0.47588 9 6 2 0 0 0 0.54444 1 40827 40827 4.756 0 1 346160 14666 1667 9958 10158 17676 17676 0.023493395165132824 FTDSIGHCHL 10 Unmodified _FTDSIGHCHL_ 0 0 0 REV__nc|ENSG00000205946|Q6QN14|USP17L6P REV__nc|ENSG00000205946|Q6QN14|USP17L6P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.283935546875 2 565.258391 1128.50223 0.097245 5.4968E-05 -0.5088 -0.00028761 -0.41156 -0.00023264 565.2594367728246 40.375 0.30064 40.375 40.131 40.432 0 30 14 3 0 0 0 0.21571 1 21714 21714 25.399 0 1 3960200 + 14667 24370 9959 10159 17677 17677 -0.05688261956652241 FTDSIGHCHL 10 Unmodified _FTDSIGHCHL_ 0 0 0 REV__nc|ENSG00000205946|Q6QN14|USP17L6P REV__nc|ENSG00000205946|Q6QN14|USP17L6P MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 565.258391 1128.50223 0.7572 0.00042801 -2.3669 -0.0013379 -1.6097 -0.00090991 565.2569741268259 40.623 0.16339 40.628 40.509 40.672 0.0050545 0.12659 -0.00065109 NaN 25.399 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1140900 + 14668 24370 9959 10159 -0.05688261956652241 FTDSPIKVE 9 Unmodified _FTDSPIKVE_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.272216796875 2 518.27149 1034.52843 0.20236 0.00010488 1.1015 0.00057088 1.3039 0.00067575 518.2719196519936 34.08 0.25308 34.109 33.993 34.246 0.028931 24 11 3 0 0 0 0.07087 1 17933 17933 39.95 3.8227 1 3965200 + 14669 22726 9960 10160 17678 17678 0.012543304864720994 FTDVEMQSR 9 Unmodified _FTDVEMQSR_ 0 0 0 ENSG00000260802|ENST00000569275|SERTM2 ENSG00000260802|ENST00000569275|SERTM2 ENSG00000260802|ENST00000569275|SERTM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2952270507812 2 556.755681 1111.49681 0.84139 0.00046845 -1.9871 -0.0011063 -1.1457 -0.00063787 556.7560117011992 60.197 0.40275 60.197 59.943 60.345 0 35 17 3 0 0 0 0.19496 1 33621 33621 13.906 2.2658 1 1591100 14670 10831 9961 10161 17679 17679 -0.05447985539126421 FTEASIVYI 9 Unmodified _FTEASIVYI_ 0 0 0 REV__ENSG00000116459|ENST00000369722|ATP5PB REV__ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7767944335938 2 521.776408 1041.53826 0.60653 0.00031648 -1.1344 -0.00059192 -0.5279 -0.00027545 521.7759924738759 73.802 0.45213 73.326 73.118 73.57 -0.47588 56 21 4 0 0 0 0.16226 2 40325 40325;40427 26.884 7.4447 1 13437000 + 14671 19042 9962 10162 17680;17681 17680 0.019155184918645318 FTEASIVYI 9 Unmodified _FTEASIVYI_ 0 0 0 REV__ENSG00000116459|ENST00000369722|ATP5PB REV__ENSG00000116459|ENST00000369722|ATP5PB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 521.776408 1041.53826 0.60653 0.00031648 -1.1344 -0.00059192 -0.5279 -0.00027545 521.7759924738759 73.802 0.45213 73.326 73.118 73.57 -0.47588 -0.0080883 -4.4657E-05 NaN 26.884 56 21 4 NaN NaN NaN NaN 0 NaN NaN 0 13437000 + 14672 19042 9962 10162 0.019155184918645318 FTEATRILF 9 Unmodified _FTEATRILF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.8246459960938 2 549.303124 1096.5917 1.4653 0.00080491 -3.7703 -0.002071 -2.3049 -0.0012661 549.302230468138 98.205 0.19553 92.029 91.924 92.12 -6.1757 32 12 3 0 0 0 0.17275 1 65166 65166 21.747 4.8044 1 50123000 14673 1696 9963 10163 17682 17682 0.04726315994366814 FTEAVLLPF 9 Unmodified _FTEAVLLPF_ 0 0 0 REV__nc|ENSG00000095059|P49366-2|DHPS REV__nc|ENSG00000095059|P49366-2|DHPS MSMS AL20221201_MKP_PDAC_01 4 518.7986450195312 2 518.789318 1035.56408 NaN NaN NaN NaN NaN NaN NaN 100.9 1 94.721 94.221 95.221 -6.1757 0 0 0 0.029091 1 67590 67590 67.344 0.30853 1 + 14674 17934 9964 10164 17683 17683 0.047724127341325584 FTEEDEDED 9 Unmodified _FTEEDEDED_ 0 0 0 REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3 REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3087768554688 2 564.696206 1127.37786 0.4969 0.0002806 -0.3606 -0.00020363 0.1363 7.6966E-05 564.695896360758 63.578 0.22312 63.092 62.969 63.192 -0.48617 14 9 2 0 0 0 0.21819 1 34653 34653 2.0598 1.2661 1 1216600 + 14675 17433 9965 10165 17684 17684 -0.18073525753652575 FTEENNLITF 10 Unmodified _FTEENNLITF_ 0 0 0 nc|ENSG00000181282|Q8NH89|OR5AK3P nc|ENSG00000181282|Q8NH89|OR5AK3P nc|ENSG00000181282|Q8NH89|OR5AK3P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2992553710938 2 614.298236 1226.58192 0.3532 0.00021697 -1.1184 -0.00068704 -0.76522 -0.00047007 614.297758861723 63.486 0.17827 63.486 63.434 63.612 0 18 10 2 0 0 0 0.52888 1 35411 35411 14.838 3.198 1 2317800 14676 16428 9966 10166 17685 17685 -0.02230916801681815 FTEKRREREC 10 Unmodified _FTEKRREREC_ 0 0 0 ENST00000322038.5_2_18:72922772-72923027:+|nuORF ENST00000322038.5_2_18:72922772-72923027:+|nuORF ENST00000322038.5_2_18:72922772-72923027:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.8948059082031 3 451.894582 1352.66192 NaN NaN NaN NaN NaN NaN NaN 16.673 1 16.674 16.174 17.174 0.0010548 0 0 0 1.0047 1 8237 8237 0.15932 0 1 14677 11779 9967 10167 17686 17686 -0.0003075367944802565 FTEKTRSGD 9 Unmodified _FTEKTRSGD_ 0 0 0 REV__ENST00000409645.5_1_2:135206953-135207217:+|nuORF REV__ENST00000409645.5_1_2:135206953-135207217:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.284912109375 2 520.753995 1039.49344 0.52058 0.0002711 -2.8632 -0.001491 -2.3426 -0.0012199 520.7525191363904 46.713 0.31174 46.376 46.25 46.562 -0.33664 18 15 2 0 0 0 0.19496 1 25063 25063 13.906 1.3745 1 1742100 + 14678 26696 9968 10168 17687 17687 -0.024729123214683568 FTESDAMY 8 Unmodified _FTESDAMY_ 0 0 0 REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22 REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.19140625 2 482.191851 962.369149 -0.37755 -0.00018205 -1.9607 -0.00094543 -2.3382 -0.0011275 482.1909474423822 33.85 0.21982 33.85 33.728 33.947 0 18 10 2 0 0 0 0.78849 1 17788 17788 9.3474 3.587 1 3054900 + 14679 22191 9969 10169 17688 17688 -0.11354126133164755 FTEYSSQQWF 10 Unmodified _FTEYSSQQWF_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.2901000976562 2 661.788035 1321.56152 0.42109 0.00027867 -0.57905 -0.00038321 -0.15796 -0.00010453 661.7875868254276 94.054 0.46104 93.634 93.413 93.874 -0.42044 81 24 4 0 0 0 0.70951 1 51317 51317 1.8442 0.19162 1 8966000 14680 7163;16335 9970 10170 17689 17689 -0.08640087461481016 FTFCAAMLL 9 Unmodified _FTFCAAMLL_ 0 0 0 REV__ENSG00000120725|ENST00000394817|SIL1 REV__ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.255615234375 2 508.750824 1015.4871 0.71466 0.00036358 -1.7785 -0.00090483 -1.0639 -0.00054124 508.7492272823565 60.057 0.50583 60.057 59.773 60.279 0 42 22 3 0 0 0 0.28047 1 33395 33395 18.135 1.0484 1 5037600 + 14681 19257 9971 10171 17690 17690 -0.020028450782092477 FTFEGKLEAA 10 Unmodified _FTFEGKLEAA_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1 nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7859497070312 2 556.784764 1111.55498 NaN NaN NaN NaN NaN NaN NaN 51.644 1 51.21 50.71 51.71 -0.43367 0 0 0 0.52595 1 27857 27857 24.991 6.8446 1 14682 5311 9972 10172 17691 17691 0.003660193778159737 FTFEGKLEAA 10 Unmodified _FTFEGKLEAA_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-3|NPEPPSL1 nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20221201_MKP_PDAC_01 4 556.7855224609375 2 556.784764 1111.55498 NaN NaN NaN NaN NaN NaN NaN 57.23 1 51.202 50.702 51.702 -6.0275 0 0 0 0.014846 1 36594 36594 69.338 34.406 1 14683 5311 9972 10172 17692 17692 0.003660193778159737 FTFTPQNNEF 10 Unmodified _FTFTPQNNEF_ 0 0 0 ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.7811889648438 2 622.782753 1243.55095 0.56191 0.00034995 -0.20768 -0.00012934 0.35423 0.00022061 622.7806144176819 67.855 0.36702 67.873 67.668 68.035 0.018028 45 16 4 0 0 0 0.1942 1 37228 37228 34.402 5.3201 1 11507000 14684 2742 9973 10173 17693 17693 -0.06108070115897135 FTGSAEVY 8 Unmodified _FTGSAEVY_ 0 0 0 REV__nc|ENSG00000171962|Q9H069-2|DRC3 REV__nc|ENSG00000171962|Q9H069-2|DRC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2033081054688 2 437.203076 872.391599 0.45243 0.0001978 -0.39579 -0.00017304 0.056637 2.4762E-05 437.20294840822066 51.586 0.3214 51.586 51.431 51.753 0 20 14 2 0 0 0 0.77907 1 28484 28484 10.183 0 1 2263700 + 14685 29780 9974 10174 17694 17694 -0.04970158673233982 FTHHERAITF 10 Unmodified _FTHHERAITF_ 0 0 0 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8226318359375 2 629.820004 1257.62546 1.2939 0.00081492 1.6125 0.0010156 2.9064 0.0018305 629.8211683657145 100.81 0.11409 94.632 94.556 94.67 -6.1757 15 7 3 0 0 0 0.47059 1 67506 67506 20.415 0 1 20343000 14686 5833 9975 10175 17695 17695 0.0069473748610562325 FTHLFRRL 8 Unmodified _FTHLFRRL_ 0 0 0 REV__ENST00000379463.6_1_16:66860654-66864856:-|nuORF REV__ENST00000379463.6_1_16:66860654-66864856:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3173217773438 2 545.319443 1088.62433 NaN NaN NaN NaN NaN NaN NaN 78.322 1 78.322 77.822 78.822 0 0 0 0 0.97444 1 43527 43527 2.8892 0 1 + 14687 26285 9976 10176 17696 17696 0.08356567907890167 FTIYPLFA 8 Unmodified _FTIYPLFA_ 0 0 0 REV__ENSG00000129667|ENST00000675367|RHBDF2 REV__ENSG00000129667|ENST00000675367|RHBDF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2253723144531 2 486.265479 970.516405 0.71193 0.00034619 -2.8616 -0.0013915 -2.1497 -0.0010453 486.2641616805001 50.817 0.27788 50.403 50.298 50.576 -0.41351 16 13 2 0 0 0 8.7369 1 27421 27421 15.768 4.1279 1 1015300 + 14688 19678 9977 10177 17697 17697 0.029967585339363723 FTKDWVEY 8 Unmodified _FTKDWVEY_ 0 0 0 ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.25634765625 2 544.258382 1086.50221 NaN NaN NaN NaN NaN NaN NaN 28.377 1 28.377 27.877 28.877 0 0 0 0 0.97444 1 14655 14655 4.3292 0.73274 1 14689 5795 9978 10178 17698 17698 -0.037579386849984076 FTKEAGTLAY 10 Unmodified _FTKEAGTLAY_ 0 0 0 ENSG00000133048|ENST00000255409|CHI3L1;ENST00000472064.1_1_1:203149576-203151929:-|nuORF ENSG00000133048|ENST00000255409|CHI3L1 ENSG00000133048|ENST00000255409|CHI3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7852783203125 2 550.784764 1099.55498 0.91801 0.00050562 -0.92467 -0.00050929 -0.0066622 -3.6694E-06 550.7839931564587 42.932 0.42731 42.932 42.756 43.183 0 31 21 2 0 0 0 0.053349 1 23246 23246 57.722 1.5449 1 14666000 14690 4481 9979 10179 17699 17699 0.009180193778092871 FTKKLWAY 8 Unmodified _FTKKLWAY_ 0 0 0 CON__Q9TRI1 CON__Q9TRI1 CON__Q9TRI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2715454101562 2 528.797478 1055.5804 0.18612 9.8422E-05 -2.3171 -0.0012253 -2.1309 -0.0011268 528.7970830396307 79.59 0.32584 79.645 79.523 79.849 0.05497 19 12 2 0 0 0 8.7369 1 44026 44026 10.183 0 1 671000 + 14691 213 9980 10180 17700 17700 0.05483538690896239 FTKKTETI 8 Unmodified _FTKKTETI_ 0 0 0 REV__ENSG00000230453|ENST00000684830|ANKRD18B REV__ENSG00000230453|ENST00000684830|ANKRD18B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7219543457031 2 484.276575 966.538597 0.051386 2.4885E-05 1.7731 0.00085868 1.8245 0.00088357 484.27750161181115 70.486 0.32913 70.486 70.308 70.637 0 21 13 2 0 0 0 8.7369 1 39205 39205 5.7604 5.7604 1 559810 + 14692 24405 9981 10181 17701 17701 0.05398938211715176 FTLAGILFGNI 11 Unmodified _FTLAGILFGNI_ 0 0 0 ENSG00000122728|ENST00000242310|TAF1L ENSG00000122728|ENST00000242310|TAF1L ENSG00000122728|ENST00000242310|TAF1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2253112792969 3 389.225375 1164.6543 0.17795 6.9265E-05 -0.1474 -5.7373E-05 0.030552 1.1892E-05 389.2252315564635 48.78 0.31455 48.736 48.573 48.887 -0.04369 42 15 3 0 0 0 0.68427 1 26396 26396 2.6312 0.72486 1 20009000 14693 3657 9982 10182 17702 17702 0.0785546206257095 FTLAYKLTK 9 Unmodified _FTLAYKLTK_ 0 0 0 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.21826171875 3 362.21822 1083.63283 NaN NaN NaN NaN NaN NaN NaN 0.58722 1 0.51393 0.013932 1.0139 -0.073289 0 0 0 0.86004 1 293 293 0.26902 0 1 + 14694 19443 9983 10183 17703 17703 0.09436077033819856 FTLAYKLTK 9 Unmodified _FTLAYKLTK_ 0 0 0 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2158813476562 3 362.21822 1083.63283 NaN NaN NaN NaN NaN NaN NaN 14.945 1 14.914 14.414 15.414 -0.030868 0 0 0 0.86004 1 7306 7306 0.26902 0 1 + 14695 19443 9983 10183 17704 17704 0.09436077033819856 FTLAYKLTK 9 Unmodified _FTLAYKLTK_ 0 0 0 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2171630859375 3 362.21822 1083.63283 NaN NaN NaN NaN NaN NaN NaN 14.745 1 14.751 14.251 15.251 0.0057774 0 0 0 0.86004 1 7324 7324 0.26902 0 1 + 14696 19443 9983 10183 17705 17705 0.09436077033819856 FTLFFSFP 8 Unmodified _FTLFFSFP_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2576904296875 2 503.257654 1004.50076 0.86928 0.00043747 -0.91003 -0.00045798 -0.040747 -2.0506E-05 503.2573473653476 80.912 0.51524 74.736 74.498 75.013 -6.1757 63 28 3 0 0 0 0.46494 2 53098 52981;53098 38.151 15.003 1 29768000 14697 5126 9984 10184 17706;17707 17707 -0.0013152798309192804 FTLIRKPDTP 10 Unmodified _FTLIRKPDTP_ 0 0 0 ENST00000543072.1_1_12:123849536-123850236:+|nuORF ENST00000543072.1_1_12:123849536-123850236:+|nuORF ENST00000543072.1_1_12:123849536-123850236:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3427734375 2 594.342781 1186.67101 0.36604 0.00021755 0.31759 0.00018876 0.68363 0.00040631 594.3429847247635 69.194 0.34268 69.225 68.99 69.333 0.030914 48 16 4 0 0 0 0.32072 1 38074 38074 26.268 3.5319 1 13067000 14698 15065 9985 10185 17708 17708 0.08513962948518383 FTLLEVRTL 9 Unmodified _FTLLEVRTL_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2752685546875 2 546.326599 1090.63865 0.24822 0.00013561 0.24025 0.00013125 0.48846 0.00026686 546.3266836311528 99.746 0.14783 93.571 93.49 93.638 -6.1757 25 9 3 0 0 0 0.19017 1 66473 66473 24.021 2.4836 1 186540000 + 14699 24010 9986 10186 17709 17709 0.09695175545516577 FTLMKLRH 8 Unmodified _FTLMKLRH_ 0 0 0 ENSG00000124357|ENST00000244204|NAGK;nc|ENSG00000124357|Q9UJ70-2|NAGK;ENST00000437460.1_1_2:71405726-71405900:+|nuORF;ENST00000498022.1_1_2:71304672-71305635:+|nuORF ENSG00000124357|ENST00000244204|NAGK ENSG00000124357|ENST00000244204|NAGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3035278320312 2 523.302404 1044.59026 NaN NaN NaN NaN NaN NaN NaN 90.899 1 90.936 90.436 91.436 0.036499 0 0 0 0.97444 1 50562 50562 4.756 2.1785 1 14700 3780 9987 10187 17710 17710 0.06974403424624143 FTLNEEEDCF 10 Unmodified _FTLNEEEDCF_ 0 0 0 nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;nc|ENSG00000089101|Q8NHU2-6|CFAP61;ENST00000488640.1_1_20:20243635-20269269:+|nuORF;nc|ENSG00000089101|Q8NHU2-5|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.7509155273438 2 623.750261 1245.48597 NaN NaN NaN NaN NaN NaN NaN 66.613 1 66.613 66.113 67.113 0 0 0 0 0.96756 1 37152 37152 0.45834 0 1 14701 1515 9988 10188 17711 17711 -0.12695432704072118 FTLSLMSFLM 10 Unmodified _FTLSLMSFLM_ 0 0 0 TAS2R50|p.I193M|1|0.06|ENSG00000212126|chr12:10986282-10986282|T/C|missense_variant TAS2R50|p.I193M|1|0.06|ENSG00000212126|chr12:10986282-10986282|T/C|missense_variant TAS2R50|p.I193M|1|0.06|ENSG00000212126|chr12:10986282-10986282|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3031005859375 2 595.303421 1188.59229 0.47662 0.00028373 1.1203 0.00066694 1.597 0.00095067 595.3042774933748 68.822 0.62451 68.847 68.499 69.123 0.025146 100 29 5 0 0 0 0.42068 1 37935 37935 20.454 4.6064 1 22906000 14702 30181 9989 10189 17712 17712 0.005536513275728794 FTMITKVSF 9 Unmodified _FTMITKVSF_ 0 0 0 REV__ENST00000297875.6_1_X:37892863-37893016:+|nuORF REV__ENST00000297875.6_1_X:37892863-37893016:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2877197265625 2 537.288628 1072.5627 1.1119 0.00059743 -1.4549 -0.00078167 -0.34292 -0.00018425 537.2870058089601 87.916 2.3872 81.74 80.037 82.424 -6.1757 343 131 5 0 0 0 0.039985 8 57877 57010;57132;57259;57877;57996;58116;58238;58369 49.933 11.741 1 304550000 + 14703 25285 9990 10190 17713;17714;17715;17716;17717;17718;17719;17720 17716 0.02932455373729681 FTNEETVSF 9 Unmodified _FTNEETVSF_ 0 0 0 ENSG00000153310|ENST00000694912|CYRIB;nc|ENSG00000153310|Q9NUQ9-2|CYRIB ENSG00000153310|ENST00000694912|CYRIB ENSG00000153310|ENST00000694912|CYRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2423706054688 2 537.242929 1072.47131 0.83148 0.0004467 -0.18675 -0.00010033 0.64472 0.00034637 537.242683999512 51.333 0.31324 51.333 51.187 51.5 0 35 13 3 0 0 0 0.10247 1 28335 28335 32.786 6.5175 1 12483000 14704 6258 9991 10191 17721 17721 -0.06203136789895325 FTNEETVSF 9 Unmodified _FTNEETVSF_ 0 0 0 ENSG00000153310|ENST00000694912|CYRIB;nc|ENSG00000153310|Q9NUQ9-2|CYRIB ENSG00000153310|ENST00000694912|CYRIB ENSG00000153310|ENST00000694912|CYRIB MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2418212890625 2 537.242929 1072.47131 1.0633 0.00057125 0.25513 0.00013707 1.3184 0.00070832 537.2431957618079 59.186 0.34147 53.111 52.953 53.295 -6.0745 29 18 2 0 0 0 0.07087 1 38066 38066 39.95 7.164 1 34527000 14705 6258 9991 10191 17722 17722 -0.06203136789895325 FTNKQVPFP 9 Unmodified _FTNKQVPFP_ 0 0 0 REV__nc|ENSG00000112303|O95498-6|VNN2 REV__nc|ENSG00000112303|O95498-6|VNN2 MSMS AL20221201_MKP_PDAC_01 4 359.8626708984375 3 359.862437 1076.56548 NaN NaN NaN NaN NaN NaN NaN 34.88 1 30.785 30.285 31.285 -4.0951 0 0 0 0.84369 1 20161 20161 1.1933 0 1 + 14706 18807 9992 10192 17723 17723 0.030260468229016624 FTNLEVCSIS 10 Unmodified _FTNLEVCSIS_ 0 0 0 ENSG00000180440|ENST00000315190|SERTM1 ENSG00000180440|ENST00000315190|SERTM1 ENSG00000180440|ENST00000315190|SERTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.766357421875 2 556.768257 1111.52196 0.52946 0.00029479 -1.248 -0.00069487 -0.71858 -0.00040008 556.7679583050494 66.133 0.28673 66.133 65.995 66.281 0 20 13 2 0 0 0 0.35903 1 36881 36881 24.021 0 1 2461900 14707 8903 9993 10193 17724 17724 -0.02933930736548973 FTNPEQIKQW 10 Unmodified _FTNPEQIKQW_ 0 0 0 REV__nc|ENSG00000135677|P15586-2|GNS REV__nc|ENSG00000135677|P15586-2|GNS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8890380859375 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 63.962 1 63.952 63.452 64.452 -0.010532 0 0 0 0.99248 1 35003 35003 0.62683 0.21856 1 + 14708 20087 9994 10194 17725 17725 0.0072018456346540916 FTNPGTYEPF 10 Unmodified _FTNPGTYEPF_ 0 0 0 REV__ENSG00000214415|ENST00000398291|GNAT3 REV__ENSG00000214415|ENST00000398291|GNAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2678833007812 2 586.766571 1171.51859 0.72689 0.00042651 -1.7649 -0.0010356 -1.038 -0.00060906 587.2664896734494 48.263 0.78555 43.03 42.496 43.282 -5.2339 121 47 4 0 0 0 0.48505 1 29990 29990 17.113 1.3447 1 54442000 + 14709 24312 9995 10195 17726 17726 -0.06030857518931043 FTNTSSYEY 9 Unmodified _FTNTSSYEY_ 0 0 0 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2809448242188 2 556.232561 1110.45057 1.0063 0.00055972 0.56332 0.00031334 1.5696 0.00087306 556.2329661330781 51.338 0.67911 51.338 50.843 51.522 0 89 32 5 0 0 0 0.5029 1 28176 28176 7.2892 1.5288 1 41147000 14710 2275 9996 10196 17727 17727 -0.10023727169550511 FTQGGLLFL 9 Unmodified _FTQGGLLFL_ 0 0 0 REV__nc|ENSG00000171617|O14682-2|ENC1 REV__nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2824096679688 2 498.28166 994.548768 2.1265 0.0010596 -0.082807 -4.1261E-05 2.0437 0.0010183 498.2818025060593 94.792 0.46037 94.806 94.492 94.952 0.014244 36 17 3 0 0 0 0.032796 1 52661 52661 53.833 5.4869 1 6686500 + 14711 22584 9997 10197 17728 17728 0.05127545936932165 FTQGGLLFL 9 Unmodified _FTQGGLLFL_ 0 0 0 REV__nc|ENSG00000171617|O14682-2|ENC1 REV__nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2818603515625 2 498.28166 994.548768 1.2425 0.00061913 0.076213 3.7976E-05 1.3187 0.00065711 498.2817035383255 100.4 0.16948 94.223 94.122 94.291 -6.1757 26 10 3 0 0 0 0.013041 1 67107 67107 71.922 12.127 1 62725000 + 14712 22584 9997 10197 17729 17729 0.05127545936932165 FTQLGYPYF 9 Unmodified _FTQLGYPYF_ 0 0 0 REV__nc|ENSG00000100242|Q9UH99-3|SUN2 REV__nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.27734375 2 568.276575 1134.5386 0.20167 0.0001146 0.41671 0.00023681 0.61838 0.00035141 568.277142798536 80.2 0.76538 80.257 79.797 80.563 0.057587 58 35 2 0 0 0 0.024882 1 44315 44315 58.679 14.272 1 28261000 + 14713 18033 9998 10198 17730 17730 -0.02329061788304898 FTQLLLCGF 9 Carbamidomethyl (C) _FTQLLLC(Carbamidomethyl (C))GF_ FTQLLLC(1)GF FTQLLLC(56)GF 0 1 0 nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;ENSG00000185008|ENST00000696593|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7863159179688 2 549.786253 1097.55795 1.0535 0.00057923 -0.14651 -8.0549E-05 0.90704 0.00049868 549.7862391812997 71.105 0.88955 64.929 64.353 65.243 -6.1757 108 45 3 0 0 0 0.028475 2 46451 46451;46568 56.177 35.723 1 58225000 14714 9316 9999 10199 17731;17732 17731 870 0.013075712309500886 FTQLLLCGF 9 Carbamidomethyl (C) _FTQLLLC(Carbamidomethyl (C))GF_ FTQLLLC(1)GF FTQLLLC(46)GF 0 1 0 nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;ENSG00000185008|ENST00000696593|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7877807617188 2 549.786253 1097.55795 0.99655 0.00054789 0.94062 0.00051714 1.9372 0.001065 549.786696084233 71.871 0.50555 65.695 65.537 66.043 -6.1757 41 27 2 0 0 0 0.047788 1 46924 46924 45.7 18.816 1 20478000 14715 9316 9999 10199 17733 17733 870 0.013075712309500886 FTQNIKPTL 9 Unmodified _FTQNIKPTL_ 0 0 0 REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3032836914062 2 531.303124 1060.5917 0.10232 5.4362E-05 0.074759 3.972E-05 0.17708 9.4081E-05 531.3033127855323 85.058 1.1549 78.882 78.172 79.327 -6.1757 174 69 3 0 0 0 0.11005 1 55562 55562 41.84 1.8899 1 92362000 + 14716 21873 10000 10200 17734 17734 0.06382315994369492 FTQTNPNYA 9 Unmodified _FTQTNPNYA_ 0 0 0 REV__ENSG00000174405|ENST00000442234|LIG4 REV__ENSG00000174405|ENST00000442234|LIG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2432861328125 2 528.243264 1054.47197 0.89162 0.00047099 -1.1317 -0.0005978 -0.24006 -0.00012681 528.2428009791554 36.468 0.25756 36.468 36.33 36.588 0 35 12 4 0 0 0 0.039985 1 19319 19319 49.933 1.5872 1 11985000 + 14717 22791 10001 10201 17735 17735 -0.053082973501886954 FTQTNPNYA 9 Unmodified _FTQTNPNYA_ 0 0 0 REV__ENSG00000174405|ENST00000442234|LIG4 REV__ENSG00000174405|ENST00000442234|LIG4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 528.243264 1054.47197 0.89162 0.00047099 -1.1317 -0.0005978 -0.24006 -0.00012681 528.2428009791554 36.468 0.25756 36.468 36.33 36.588 0 0 0 NaN 49.933 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 11985000 + 14718 22791 10001 10201 -0.053082973501886954 FTREDPTF 8 Unmodified _FTREDPTF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2016296386719 2 506.740357 1011.46616 -0.37711 -0.0001911 -3.1251 -0.0015836 -3.5022 -0.0017747 506.738243288932 78.686 0.25981 78.2 78.035 78.295 -0.48596 16 9 2 0 0 0 8.7369 1 43131 43131 5.7604 0 1 584530 14719 16372 10002 10202 17736 17736 -0.039113958618713696 FTRHTSYF 8 Unmodified _FTRHTSYF_ 0 0 0 REV__ENSG00000185313|ENST00000449082|SCN10A REV__ENSG00000185313|ENST00000449082|SCN10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2632446289062 2 529.756341 1057.49813 0.54076 0.00028647 -0.80319 -0.0004255 -0.26243 -0.00013902 529.7560541828802 72.427 0.26898 71.951 71.854 72.123 -0.4761 20 12 2 0 0 0 8.7369 1 39610 39610 5.7604 1.0044 1 1060800 + 14720 23493 10003 10203 17737 17737 -0.028319833880459555 FTRKRYEF 8 Unmodified _FTRKRYEF_ 0 0 0 REV__ENSG00000188312|ENST00000375587|CENPP REV__ENSG00000188312|ENST00000375587|CENPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8743591308594 3 382.873336 1145.59818 0.030856 1.1814E-05 0.33833 0.00012954 0.36919 0.00014135 382.8735077382572 17.701 0.20305 17.706 17.587 17.79 0.0050564 31 14 3 0 0 0 0.80383 1 8913 8913 4.3292 0.38484 1 3155700 + 14721 23702 10004 10204 17738 17738 0.031202539457581224 FTRKRYEF 8 Unmodified _FTRKRYEF_ 0 0 0 REV__ENSG00000188312|ENST00000375587|CENPP REV__ENSG00000188312|ENST00000375587|CENPP MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8734436035156 3 382.873336 1145.59818 1.2473 0.00047757 0.051614 1.9762E-05 1.2989 0.00049733 382.87331339123375 18.827 0.36751 16.205 16.014 16.381 -2.6215 66 26 3 0 0 0 0.79982 1 9933 9933 6.7232 0.51738 1 17566000 + 14722 23702 10004 10204 17739 17739 0.031202539457581224 FTRKRYEF 8 Unmodified _FTRKRYEF_ 0 0 0 REV__ENSG00000188312|ENST00000375587|CENPP REV__ENSG00000188312|ENST00000375587|CENPP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.873336 1145.59818 0.030856 1.1814E-05 0.33833 0.00012954 0.36919 0.00014135 382.8735077382572 17.701 0.20305 17.706 17.587 17.79 0.0050564 0 0 NaN 4.3292 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3155700 + 14723 23702 10004 10204 0.031202539457581224 FTRRGLRKF 9 Unmodified _FTRRGLRKF_ 0 0 0 REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF REV__ENST00000582734.1_1_19:40827791-40830098:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2331848144531 3 394.240241 1179.69889 0.66307 0.00026141 -1.3628 -0.00053727 -0.69974 -0.00027586 394.23916836832535 52.578 0.31918 52.519 52.289 52.608 -0.058918 33 15 3 0 0 0 0.53557 1 28528 28528 5.2969 0 1 2908900 + 14724 21541 10005 10205 17740 17740 0.1162333071924877 FTSRIIDFFT 10 Unmodified _FTSRIIDFFT_ 0 0 0 ENSG00000131899|ENST00000316843|LLGL1;ENST00000479155.1_1_17:18137242-18138852:+|nuORF ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 623.34814453125 2 623.826963 1245.63937 0.82079 0.00051203 -0.58105 -0.00036248 0.23973 0.00014955 623.8269861275513 54.981 0.088829 49.103 49.033 49.122 -5.8777 7 5 2 0 0 0 0.22941 1 34924 34924 9.3831 1.2276 1 9155200 14725 4358 10006 10206 17741 17741 0.02637970194564332 FTTGYDSLI 9 Unmodified _FTTGYDSLI_ 0 0 0 REV__ENSG00000105778|ENST00000318709|AVL9 REV__ENSG00000105778|ENST00000318709|AVL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7509765625 2 508.75039 1015.48623 0.35883 0.00018255 0.86638 0.00044077 1.2252 0.00062332 508.7506295504055 79.196 0.92095 78.71 78.436 79.357 -0.48596 88 40 3 0 0 0 0.12841 1 43400 43400 30.225 1.738 1 3607000 + 14726 18457 10007 10207 17742 17742 -0.020896449218980706 FTTKCADDL 9 Unmodified _FTTKCADDL_ 0 0 0 REV__nc|ENSG00000134042|Q9BYG7-6|MRO REV__nc|ENSG00000134042|Q9BYG7-6|MRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2350158691406 2 507.23405 1012.45355 -0.22034 -0.00011176 -0.24939 -0.0001265 -0.46973 -0.00023826 507.23400758333855 55.891 0.19659 55.891 55.773 55.969 0 23 12 2 0 0 0 0.39863 1 31041 31041 12.532 1.4171 1 5620400 + 14727 29637 10008 10208 17743 17743 -0.05218175316406359 FTTLVGGPQY 10 Unmodified _FTTLVGGPQY_ 0 0 0 PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7799682617188 2 541.779482 1081.54441 0.37269 0.00020191 0.25732 0.00013941 0.63001 0.00034133 541.779558873414 67.997 0.31309 68.022 67.794 68.108 0.025146 32 14 3 0 0 0 0.24625 1 37298 37298 30.637 6.616 1 4704700 14728 16692 10009 10209 17744 17744 0.0069003672338112665 FTTLVGGPQY 10 Unmodified _FTTLVGGPQY_ 0 0 0 PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant PPP2R1A|p.E84Q|1|0.04|ENSG00000105568|chr19:52206043-52206043|G/C|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.779482 1081.54441 0.37269 0.00020191 0.25732 0.00013941 0.63001 0.00034133 541.779558873414 67.997 0.31309 68.022 67.794 68.108 0.025146 0.017488 0.0001359 NaN 30.637 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4704700 14729 16692 10009 10209 0.0069003672338112665 FTTPLPPPSY 10 Unmodified _FTTPLPPPSY_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.290283203125 2 560.289682 1118.56481 0.64437 0.00036103 0.086825 4.8647E-05 0.73119 0.00040968 560.2898039810552 89.09 0.29152 88.586 88.416 88.707 -0.50423 23 12 2 0 0 0 0.52888 1 48708 48708 14.838 7.2293 1 538950 14730 3227 10010 10210 17745 17745 0.010272073831856687 FTTQFKFKK 9 Unmodified _FTTQFKFKK_ 0 0 0 REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1 REV__nc|ENSG00000167106|Q5T9C2-2|EEIG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 588.2625122070312 2 587.834591 1173.65463 0.33155 0.0001949 -0.37051 -0.0002178 -0.038962 -2.2903E-05 587.8349908827346 99.683 0.097351 93.508 93.46 93.558 -6.1757 7 5 2 0 0 0 0.20399 1 66452 66452 15.847 1.9411 1 31693000 + 14731 22181 10011 10211 17746 17746 0.07474881782400189 FTVCGPTHGPS 11 Unmodified _FTVCGPTHGPS_ 0 0 0 REV__ENSG00000105755|ENST00000292147|ETHE1 REV__ENSG00000105755|ENST00000292147|ETHE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7536010742188 2 551.752941 1101.49133 0.84563 0.00046658 1.2505 0.00068998 2.0962 0.0011566 551.7531771961918 58.301 0.38964 52.227 52.031 52.421 -6.0745 47 20 3 0 0 0 0.56638 1 37397 37397 13.042 2.2185 1 23421000 + 14732 18455 10012 10212 17747 17747 -0.05535664330932377 FTVLETRLL 9 Unmodified _FTVLETRLL_ 0 0 0 nc|ENSG00000115598|Q9HB29-2|IL1RL2;ENSG00000115598|ENST00000264257|IL1RL2 nc|ENSG00000115598|Q9HB29-2|IL1RL2 nc|ENSG00000115598|Q9HB29-2|IL1RL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2547607421875 2 546.326599 1090.63865 0.55939 0.00030561 -0.20935 -0.00011437 0.35004 0.00019124 546.326596137801 48.2 0.31335 42.966 42.756 43.069 -5.2339 33 18 2 0 0 0 0.19633 1 30063 30063 6.2058 0 1 22108000 14733 3143 10013 10213 17748 17748 0.09695175545516577 FTVRGVALY 9 Unmodified _FTVRGVALY_ 0 0 0 ENST00000338051.4_1_5:134193097-134193166:+|nuORF ENST00000338051.4_1_5:134193097-134193166:+|nuORF ENST00000338051.4_1_5:134193097-134193166:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.291259765625 2 513.292559 1024.57057 0.83676 0.0004295 -0.50383 -0.00025861 0.33292 0.00017089 513.2921439342119 69.192 0.38812 63.017 62.822 63.21 -6.1757 38 21 2 0 0 0 0.34999 1 45264 45264 14.838 0.93222 1 56278000 14734 11937 10014 10214 17749 17749 0.05926350685513171 FTVSFKCER 9 Unmodified _FTVSFKCER_ 0 0 0 REV__ENST00000302517.7_1_5:139062815-139062875:+|nuORF REV__ENST00000302517.7_1_5:139062815-139062875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8554382324219 3 372.855065 1115.54336 0.90887 0.00033888 -0.12718 -4.7418E-05 0.78169 0.00029146 372.85502958510006 66.487 0.28518 66.496 66.38 66.665 0.0095596 27 13 3 0 0 0 0.50598 1 36488 36488 7.1017 2.9122 1 6220900 + 14735 25336 10015 10215 17750 17750 -0.009785009171764614 FTVSYSIFT 9 Unmodified _FTVSYSIFT_ 0 0 0 REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2 REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7689208984375 2 532.768583 1063.52261 0.80611 0.00042947 0.5423 0.00028892 1.3484 0.00071839 532.768880102475 80.918 0.49577 80.978 80.764 81.26 0.059929 49 19 3 0 0 0 0.2143 1 44776 44776 21.747 0 1 5904900 + 14736 17203 10016 10216 17751 17751 -0.006607680251818238 FTWVFRRRKQR 11 Unmodified _FTWVFRRRKQR_ 0 0 0 REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF REV__ENST00000479578.5_1_1:110198981-110200495:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 790.4573364257812 2 790.457668 1578.90078 NaN NaN NaN NaN NaN NaN NaN 84.091 1 84.154 83.654 84.654 0.063171 0 0 0 0.94287 1 46526 46526 1.3295 1.3295 1 + 14737 27659 10017 10217 17752 17752 0.13448814404796394 FTYFAPPNL 9 Unmodified _FTYFAPPNL_ 0 0 0 REV__ENSG00000102313|ENST00000218436|ITIH6 REV__ENSG00000102313|ENST00000218436|ITIH6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.7985229492188 2 535.271293 1068.52803 0.85049 0.00045524 2.3566 0.0012614 3.2071 0.0017166 535.2724161642624 63.462 0.20798 57.286 57.197 57.405 -6.1757 17 12 2 0 0 0 0.209 1 41117 41117 7.2892 0.56607 1 6397600 + 14738 18233 10018 10218 17753 17753 -0.003490444427370676 FTYFTESTSLI 11 Unmodified _FTYFTESTSLI_ 0 0 0 REV__ENSG00000198965|ENST00000641067|OR10R2 REV__ENSG00000198965|ENST00000641067|OR10R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.8186645507812 2 654.821544 1307.62853 NaN NaN NaN NaN NaN NaN NaN 70.002 1 69.523 69.023 70.023 -0.47903 0 0 0 0.93224 1 38274 38274 5.7319 0.43497 1 + 14739 24112 10019 10219 17754 17754 -0.01297476970353273 FTYLHRLSCY 10 Unmodified _FTYLHRLSCY_ 0 0 0 ENST00000503821.5_1_4:47663725-47840047:-|nuORF;nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN;ENST00000502726.5_1_4:47685742-47840047:-|nuORF ENST00000503821.5_1_4:47663725-47840047:-|nuORF ENST00000503821.5_1_4:47663725-47840047:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8824157714844 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 15.489 1 15.475 14.975 15.975 -0.014067 0 0 0 1.0024 1 7604 7604 0.13989 0 1 14740 5679 10020 10220 17755 17755 -0.016068539630168743 FTYRFQRL 8 Unmodified _FTYRFQRL_ 0 0 0 REV__ENSG00000143315|ENST00000368090|PIGM REV__ENSG00000143315|ENST00000368090|PIGM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.80859375 2 565.808908 1129.60326 0.30477 0.00017244 -0.073467 -4.1568E-05 0.2313 0.00013087 565.8087450264386 90.842 0.34584 90.842 90.648 90.994 0 30 14 3 0 0 0 0.80505 1 50302 50302 5.2307 1.2863 1 984790 + 14741 20622 10021 10221 17756 17756 0.043645578083669534 FTYVGKAW 8 Unmodified _FTYVGKAW_ 0 0 0 ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF;ENSG00000117480|ENST00000243167|FAAH ENST00000468718.5_1_1:46860020-46871294:+|nuORF ENST00000468718.5_1_1:46860020-46871294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2536010742188 2 486.252903 970.491253 0.2785 0.00013542 -1.2618 -0.00061353 -0.98326 -0.00047811 486.2520463851429 46.843 0.33377 46.843 46.607 46.941 0 21 15 2 0 0 0 0.71527 1 25569 25569 15.847 2.3393 1 2721700 14742 3309 10022 10222 17757 17757 0.004827037313816618 FTYVGKAWE 9 Unmodified _FTYVGKAWE_ 0 0 0 ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF;ENSG00000117480|ENST00000243167|FAAH ENST00000468718.5_1_1:46860020-46871294:+|nuORF ENST00000468718.5_1_1:46860020-46871294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7742309570312 2 550.7742 1099.53385 0.7011 0.00038615 -0.91118 -0.00050186 -0.21008 -0.00011571 550.7735641122075 46.997 0.31131 46.66 46.483 46.794 -0.33664 47 15 4 0 0 0 0.07916 1 25127 25127 37.974 11.09 1 33624000 14743 3309 10023 10223 17758 17758 -0.011939459310497114 FTYVGKAWE 9 Unmodified _FTYVGKAWE_ 0 0 0 ENST00000468718.5_1_1:46860020-46871294:+|nuORF;ENST00000493735.5_1_1:46860047-46871467:+|nuORF;ENSG00000117480|ENST00000243167|FAAH ENST00000468718.5_1_1:46860020-46871294:+|nuORF ENST00000468718.5_1_1:46860020-46871294:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 550.7742 1099.53385 1.3754 0.00075755 -1.5243 -0.00083953 -0.14886 -8.1987E-05 550.7734618474099 46.726 0.20174 46.692 46.572 46.774 -0.033421 0.015999 -0.00053814 NaN 37.974 29 9 4 NaN NaN NaN NaN 0 NaN NaN 0 11704000 14744 3309 10023 10223 -0.011939459310497114 FVAHAASFI 9 Unmodified _FVAHAASFI_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7557067871094 2 481.758352 961.502152 0.42391 0.00020422 -3.4515 -0.0016628 -3.0275 -0.0014585 481.75573934472715 37.064 0.36219 37.064 36.857 37.219 0 43 17 3 0 0 0 0.10925 1 19683 19683 32.117 0 1 2830600 14745 5094 10024 10224 17759 17759 0.01986106105653107 FVALHAACTSF 11 Unmodified _FVALHAACTSF_ 0 0 0 REV__ENSG00000180433|ENST00000641861|OR6K6 REV__ENSG00000180433|ENST00000641861|OR6K6 MSMS AL20221201_MKP_PDAC_01 4 389.528076171875 3 389.526948 1165.55902 NaN NaN NaN NaN NaN NaN NaN 16.91 1 14.353 13.853 14.853 -2.557 0 0 0 0.92234 1 8798 8798 2.8433 0 1 + 14746 23151 10025 10225 17760 17760 -0.01714214400135461 FVALYVDCEEF 11 Unmodified _FVALYVDCEEF_ 0 0 0 ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000182871|ENST00000651438|COL18A1 ENSG00000182871|ENST00000651438|COL18A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.3031616210938 2 667.802297 1333.59004 0.92885 0.00062029 -2.9176 -0.0019484 -1.9887 -0.0013281 668.3018695341252 100.23 0.10679 94.053 93.996 94.103 -6.1757 11 6 2 0 0 0 0.35243 1 66992 66992 24.021 1.2843 1 26236000 14747 9096 10026 10226 17761 17761 -0.06341105876572328 FVANLFNTY 9 Unmodified _FVANLFNTY_ 0 0 0 ENSG00000120756|ENST00000457734|PLS1;PLS1|p.A366V|1|0.19|ENSG00000120756|chr3:142689733-142689733|C/T|missense_variant ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.303466796875 2 544.7742 1087.53385 1.0452 0.0005694 -0.21559 -0.00011745 0.82961 0.00045195 544.774291134084 87.745 0.50347 81.569 81.296 81.8 -6.1757 39 27 2 0 0 0 0.16785 1 57990 57990 23.148 11.508 1 14186000 14748 3539 10027 10227 17762 17762 -0.00641945931056398 FVANLWGWFY 10 Unmodified _FVANLWGWFY_ 0 0 0 REV__nc|ENSG00000125375|Q99766-3|DMAC2L REV__nc|ENSG00000125375|Q99766-3|DMAC2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821105957031 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 17.781 1 17.781 17.281 18.281 0 0 0 0 1.0019 1 8790 8790 0.15932 0 1 + 14749 19488 10028 10228 17763 17763 -0.015416912516684533 FVAPAYEDNI 10 Unmodified _FVAPAYEDNI_ 0 0 0 REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.774658203125 2 569.774396 1137.53424 0.34238 0.00019508 0.7727 0.00044026 1.1151 0.00063534 569.7749441745793 82.174 0.33789 82.174 82.022 82.36 0 35 15 3 0 0 0 0.6606 1 45562 45562 7.2892 1.0834 1 1040400 + 14750 29352 10029 10229 17764 17764 -0.029025710018686368 FVAPAYEDNI 10 Unmodified _FVAPAYEDNI_ 0 0 0 REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.774169921875 2 569.774396 1137.53424 0.73402 0.00041823 -0.33894 -0.00019312 0.39508 0.00022511 569.7742440015402 82.722 0.43983 82.224 82.008 82.448 -0.49751 60 18 4 0 0 0 0.5905 1 45229 45229 11.64 1.5664 1 8517400 + 14751 29352 10029 10229 17765 17765 -0.029025710018686368 FVAPAYEDNI 10 Unmodified _FVAPAYEDNI_ 0 0 0 REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant REV__GLMP|p.D257N|1|0.03|ENSG00000198715|chr1:156294047-156294047|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7742309570312 2 569.774396 1137.53424 1.6952 0.00096585 -1.0695 -0.00060939 0.62563 0.00035647 569.773716373148 82.065 0.31473 82.127 81.981 82.296 0.061996 21 12 2 0 0 0 0.5905 1 45391 45391 11.64 1.5664 1 4541400 + 14752 29352 10029 10229 17766 17766 -0.029025710018686368 FVAPISLFH 9 Unmodified _FVAPISLFH_ 0 0 0 ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-3|PHF12 ENST00000582436.5_1_17:27237055-27251401:-|nuORF ENST00000582436.5_1_17:27237055-27251401:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8193969726562 2 515.789653 1029.56475 0.4004 0.00020652 1.499 0.00077314 1.8994 0.00097967 516.2916635693393 74.777 0.28297 74.823 74.637 74.92 0.045959 20 12 2 0 0 0 0.18118 1 41238 41238 18.135 1.1927 1 2178900 14753 15572 10030 10230 17767 17767 0.051152521738458745 FVAPPLVML 9 Unmodified _FVAPPLVML_ 0 0 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2630615234375 2 493.790807 985.56706 1.2476 0.00061604 -2.5285 -0.0012486 -1.2809 -0.00063252 493.78845052445223 54.293 0.44911 48.428 48.158 48.607 -5.8653 66 26 3 0 0 0 0.18941 1 34355 34355 14.582 5.2343 1 49428000 14754 6664 10031 10231 17768 17768 0.07369964587314826 FVCCARPPSL 10 Unmodified _FVCCARPPSL_ 0 0 0 ENST00000470671.1_1_X:71475533-71493153:-|nuORF ENST00000470671.1_1_X:71475533-71493153:-|nuORF ENST00000470671.1_1_X:71475533-71493153:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.76806640625 2 546.77008 1091.52561 NaN NaN NaN NaN NaN NaN NaN 100.27 1 100.11 99.611 100.61 -0.1575 0 0 0 0.98692 1 54733 54733 0.45834 0 1 14755 13855 10032 10232 17769 17769 -0.016495394436788047 FVCFMYSLF 9 Unmodified _FVCFMYSLF_ 0 0 0 REV__ENST00000331244.9_1_10:131977668-131977848:+|nuORF REV__ENST00000331244.9_1_10:131977668-131977848:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.870361328125 3 386.17838 1155.51331 1.0803 0.0004172 0.66278 0.00025595 1.7431 0.00067315 386.1788048105835 42.211 0.46921 37.526 37.252 37.721 -4.6846 80 29 4 0 0 0 0.21806 1 25594 25594 1.0715 0 1 33641000 + 14756 25601 10033 10233 17770 17770 -0.05822575906745442 FVCLVTTKNF 10 Unmodified _FVCLVTTKNF_ 0 0 0 REV__ENST00000377191.4_1_20:21370021-21370174:+|nuORF REV__ENST00000377191.4_1_20:21370021-21370174:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.312744140625 2 586.312635 1170.61072 NaN NaN NaN NaN NaN NaN NaN 60.457 1 59.966 59.466 60.466 -0.49023 0 0 0 0.91523 1 32923 32923 7.2892 0 1 + 14757 26241 10034 10234 17771 17771 0.032235292937457416 FVCWWRYWWHY 11 Unmodified _FVCWWRYWWHY_ 0 0 0 ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 866.38818359375 2 866.387531 1730.76051 NaN NaN NaN NaN NaN NaN NaN 40.123 1 40.123 39.623 40.623 0 0 0 0 0.9435 1 21549 21549 0 0 1 14758 12973 10035 10235 17772 17772 -0.07564105643768926 FVDDYTVRV 9 Unmodified _FVDDYTVRV_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7647094726562 2 557.282389 1112.55022 1.0448 0.00058226 3.3197 0.00185 4.3645 0.0024323 557.283621657065 50.229 0.17958 49.836 49.711 49.891 -0.3923 21 8 3 0 0 0 0.16954 1 27017 27017 24.991 4.5373 1 2160300 14759 3100 10036 10236 17773 17773 -0.0015486476497699186 FVDEFDFNK 9 Unmodified _FVDEFDFNK_ 0 0 0 REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7645263671875 2 580.766571 1159.51859 NaN NaN NaN NaN NaN NaN NaN 82.72 1 82.222 81.722 82.722 -0.49751 0 0 0 0.7818 1 45283 45283 6.7232 0.36906 1 + 14760 26513 10037 10237 17774 17774 -0.05478857518892255 FVDGLTFKV 9 Unmodified _FVDGLTFKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.791259765625 2 513.286943 1024.55933 0.74194 0.00038083 2.7287 0.0014006 3.4707 0.0017815 513.7903806462106 69.197 0.32365 69.228 68.99 69.314 0.030914 34 15 3 0 0 0 0.30202 1 38015 38015 17.113 1.2657 1 2642500 14761 6383 10038 10238 17775 17775 0.04803528591378381 FVDITYEME 9 Unmodified _FVDITYEME_ 0 0 0 REV__GABRA5|p.R101L|1|0.04|ENSG00000186297|chr15:26883362-26883362|G/T|missense_variant REV__GABRA5|p.R101L|1|0.04|ENSG00000186297|chr15:26883362-26883362|G/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7564086914062 2 573.754815 1145.49508 NaN NaN NaN NaN NaN NaN NaN 43.773 1 43.773 43.273 44.273 0 0 0 0 0.6032 1 23796 23796 12.532 0.89125 1 + 14762 23566 10039 10239 17776 17776 -0.07185039347723432 FVDLGYSSAI 10 Unmodified _FVDLGYSSAI_ 0 0 0 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2696533203125 2 536.27149 1070.52843 1.0691 0.00057333 -0.37263 -0.00019983 0.69647 0.0003735 536.2698563498645 55.499 0.1635 49.578 49.49 49.653 -5.9211 12 9 2 0 0 0 0.2829 1 35348 35348 28.487 3.0875 1 14154000 14763 8221 10040 10240 17777 17777 -0.004016695135305781 FVDMVKGKSL 10 Unmodified _FVDMVKGKSL_ 0 0 0 ENSG00000092621|ENST00000641023|PHGDH ENSG00000092621|ENST00000641023|PHGDH ENSG00000092621|ENST00000641023|PHGDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2115173339844 3 375.210849 1122.61072 0.74573 0.00027981 -1.1587 -0.00043475 -0.41296 -0.00015495 375.21059960156344 23.977 0.35731 21.149 20.983 21.34 -2.8273 50 20 3 0 0 0 0.56348 1 12966 12966 11.518 0 1 17222000 14764 1621 10041 10241 17778 17778 0.05431529293787207 FVDPRCISVI 10 Unmodified _FVDPRCISVI_ 0 0 0 nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5423278808594 3 383.542598 1147.60597 -0.75626 -0.00029006 -0.13192 -5.0598E-05 -0.88818 -0.00034066 383.542543843764 28.396 0.43061 28.396 28.169 28.6 0 78 23 4 0 0 0 0.65282 1 14635 14635 4.7159 0 1 43469000 14765 8210 10042 10242 17779 17779 0.03806645151007615 FVDPRCISVI 10 Unmodified _FVDPRCISVI_ 0 0 0 nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5430908203125 3 383.542598 1147.60597 1.3962 0.00053552 -0.015684 -6.0156E-06 1.3806 0.0005295 383.5428380130527 32.188 0.44737 28.332 28.086 28.533 -3.8562 76 25 4 0 0 0 0.65282 1 18228 18228 4.7159 0.30977 1 63589000 14766 8210 10042 10242 17780 17780 0.03806645151007615 FVDRAERFY 9 Unmodified _FVDRAERFY_ 0 0 0 REV__ENSG00000198730|ENST00000361367|CTR9 REV__ENSG00000198730|ENST00000361367|CTR9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.8016967773438 2 601.80128 1201.58801 NaN NaN NaN NaN NaN NaN NaN 27.504 1 27.504 27.004 28.004 0 0 0 0 0.84369 1 14173 14173 2.3027 0.24298 1 + 14767 24047 10043 10243 17781 17781 -0.004723537794689037 FVDSSKMST 9 Unmodified _FVDSSKMST_ 0 0 0 REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2343139648438 2 501.23405 1000.45355 0.39901 0.0002 0.50919 0.00025522 0.9082 0.00045522 501.234226318075 86.915 0.40502 86.915 86.701 87.106 0 56 25 3 0 0 0 0.52067 1 48181 48181 6.2058 0.97511 1 2091800 + 14768 22401 10044 10244 17782 17782 -0.046661753163903086 FVDSSKMST 9 Unmodified _FVDSSKMST_ 0 0 0 REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 REV__nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.23405 1000.45355 0.18727 9.3868E-05 0.95335 0.00047785 1.1406 0.00057172 501.23440798849924 87.445 0.3929 86.941 86.708 87.101 -0.50423 0.012878 0.00023161 NaN 6.2058 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1937200 + 14769 22401 10044 10244 -0.046661753163903086 FVEAFRQF 8 Unmodified _FVEAFRQF_ 0 0 0 ENSG00000047230|ENST00000359276|CTPS2 ENSG00000047230|ENST00000359276|CTPS2 ENSG00000047230|ENST00000359276|CTPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7791137695312 2 522.269084 1042.52362 1.5506 0.00080985 4.2522 0.0022208 5.8029 0.0030307 522.7732718962495 58.734 0.35898 52.659 52.509 52.868 -6.0745 50 19 4 0 0 0 0.64853 1 37613 37613 21.747 3.6117 1 30388000 14770 679 10045 10245 17783 17783 0.004054911343700951 FVECFQNPGSF 11 Unmodified _FVECFQNPGSF_ 0 0 0 ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.5220031738281 3 425.521863 1273.54376 -0.4531 -0.00019281 0.34183 0.00014546 -0.11128 -4.7351E-05 425.52213569002134 19.58 0.12906 19.58 19.508 19.637 0 45 17 3 0 0 0 0.71036 1 9779 9779 1.3296 0.55311 1 2345400 14771 369 10046 10246 17784 17784 -0.08207125987973996 FVEFVKLVRA 10 Unmodified _FVEFVKLVRA_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3702392578125 2 604.363516 1206.71248 NaN NaN NaN NaN NaN NaN NaN 102.84 1 102.79 102.29 103.29 -0.047928 0 0 0 1.0024 1 57117 57117 0.40072 0 1 14772 4909 10047 10247 17785 17785 0.11739143707859512 FVEGDEEFLF 10 Unmodified _FVEGDEEFLF_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2803955078125 2 616.279512 1230.54447 NaN NaN NaN NaN NaN NaN NaN 82.896 1 82.896 82.396 83.396 0 0 0 0 0.96981 1 45980 45980 3.9444 0.3479 1 14773 2577 10048 10248 17786 17786 -0.061580080672683835 FVEIGVADKI 10 Unmodified _FVEIGVADKI_ 0 0 0 ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2095642089844 3 364.209613 1089.60701 0.80747 0.00029409 0.36909 0.00013443 1.1766 0.00042852 364.20974362760757 41.392 0.72155 36.784 36.528 37.25 -4.6079 130 46 4 0 0 0 0.64183 1 24751 24751 8.9762 0.82072 1 347610000 14774 3722 10049 10249 17787 17787 0.0657918279155183 FVELDEDEDIN 11 Unmodified _FVELDEDEDIN_ 0 0 0 REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 446.5304260253906 3 446.529629 1336.56706 0.53113 0.00023717 1.2632 0.00056408 1.7944 0.00080124 446.5302250925605 28.821 0.21197 28.759 28.622 28.834 -0.062159 22 8 3 0 0 0 0.73237 1 14865 14865 1.2148 1.2148 1 7337400 + 14775 23707 10050 10250 17788 17788 -0.0877645346031386 FVELDEDEDIN 11 Unmodified _FVELDEDEDIN_ 0 0 0 REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 446.529629 1336.56706 -0.23513 -0.00010499 1.5567 0.00069512 1.3216 0.00059013 446.8645953321726 28.884 0.14208 28.884 28.801 28.943 0 0.10323 0.00062517 NaN 1.2148 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1361900 + 14776 23707 10050 10250 -0.0877645346031386 FVELDEDEDIN 11 Unmodified _FVELDEDEDIN_ 0 0 0 REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 446.529629 1336.56706 0.48876 0.00021825 0.2717 0.00012132 0.76046 0.00033957 446.529954316014 28.67 0.20961 28.699 28.544 28.753 0.029564 -0.081568 -0.0010962 NaN 1.2148 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 4644200 + 14777 23707 10050 10250 -0.0877645346031386 FVELKRYY 8 Unmodified _FVELKRYY_ 0 0 0 nc|ENSG00000076716|O75487-2|GPC4;ENSG00000076716|ENST00000370828|GPC4 nc|ENSG00000076716|O75487-2|GPC4 nc|ENSG00000076716|O75487-2|GPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3014526367188 2 559.305667 1116.59678 0.95328 0.00053318 -0.57938 -0.00032405 0.37391 0.00020913 559.3053564822324 68.626 0.70651 68.651 68.318 69.024 0.025154 89 33 4 0 0 0 0.77907 1 37841 37841 10.183 2.2732 1 31331000 14778 1193 10051 10251 17789 17789 0.04314619856995705 FVEPLLGEEC 10 Unmodified _FVEPLLGEEC_ 0 0 0 REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF REV__ENST00000413817.7_2_22:50754827-50757307:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3037109375 2 568.270632 1134.52671 0.12157 6.9085E-05 -2.5556 -0.0014522 -2.434 -0.0013832 568.267682484809 32.168 0.2287 32.039 31.866 32.095 -0.12915 12 8 2 0 0 0 0.23634 1 16701 16701 6.7232 0 1 611020 + 14779 26742 10052 10252 17790 17790 -0.03517046593742634 FVETRDNYFYI 11 Unmodified _FVETRDNYFYI_ 0 0 0 nc|ENSG00000137103|A6NDV4|TMEM8B;CREB3-TMEM8B|2|fusion;ENSG00000137103|ENST00000643932|TMEM8B nc|ENSG00000137103|A6NDV4|TMEM8B nc|ENSG00000137103|A6NDV4|TMEM8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.85009765625 2 733.851167 1465.68778 1.4365 0.0010541 -1.8032 -0.0013232 -0.3667 -0.0002691 733.8496508291697 82.419 0.31601 82.481 82.321 82.637 0.062004 24 11 3 0 0 0 0.48615 1 45610 45610 17.113 0 1 5766900 14780 219 10053 10253 17791 17791 -0.026435809561917267 FVEVSMSEEF 10 Unmodified _FVEVSMSEEF_ 0 0 0 ENST00000461084.5_1_3:47324437-47378284:+|nuORF;nc|ENSG00000114648|O94889-2|KLHL18;ENSG00000114648|ENST00000232766|KLHL18 ENST00000461084.5_1_3:47324437-47378284:+|nuORF ENST00000461084.5_1_3:47324437-47378284:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8475646972656 3 401.846123 1202.51654 NaN NaN NaN NaN NaN NaN NaN 40.551 1 40.248 39.748 40.748 -0.30304 0 0 0 0.91523 1 21440 21440 3.8763 0 1 14781 3052 10054 10254 17792 17792 -0.07661654319008449 FVEYKEEF 8 Unmodified _FVEYKEEF_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7592163085938 2 545.758215 1089.50188 0.73595 0.00040165 -0.7419 -0.0004049 -0.0059545 -3.2497E-06 545.7587323376987 80.254 0.37033 79.764 79.587 79.957 -0.48932 36 14 3 0 0 0 0.80044 1 44016 44016 6.3541 0 1 2738100 + 14782 20993 10055 10255 17793 17793 -0.03929358404866434 FVFCWWLI 8 Unmodified _FVFCWWLI_ 0 0 0 REV__ENST00000361360.3_2_2:105473593-105473881:+|nuORF REV__ENST00000361360.3_2_2:105473593-105473881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.284423828125 2 557.283149 1112.55174 1.0448 0.00058226 1.9556 0.0010898 3.0004 0.0016721 557.283621657065 50.229 0.17958 49.836 49.711 49.891 -0.3923 21 8 3 0 0 0 0.70131 1 27062 27062 17.087 1.8381 1 2160300 + 14783 25923 10056 10256 17794 17794 -2.9022098942732555E-05 FVFCWWLI 8 Unmodified _FVFCWWLI_ 0 0 0 REV__ENST00000361360.3_2_2:105473593-105473881:+|nuORF REV__ENST00000361360.3_2_2:105473593-105473881:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.283149 1112.55174 0.83486 0.00046525 -0.48403 -0.00026974 0.35083 0.00019551 557.2819539486242 49.761 0.1408 49.761 49.671 49.812 0 -0.037858 -0.0015141 NaN 17.087 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1463100 + 14784 25923 10056 10256 -2.9022098942732555E-05 FVFDASSIQY 10 Unmodified _FVFDASSIQY_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7813110351562 2 588.782222 1175.54989 0.51556 0.00030355 -0.25421 -0.00014968 0.26135 0.00015388 588.7820052985953 75.76 0.60265 75.283 75.084 75.686 -0.47714 51 26 4 0 0 0 0.2178 2 41419 41419;41519 32.305 20.665 1 5807600 14785 4995 10057 10257 17795;17796 17795 -0.030862844848115856 FVFDASSIQY 10 Unmodified _FVFDASSIQY_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.781982421875 2 588.782222 1175.54989 0.31351 0.00018459 0.293 0.00017251 0.6065 0.0003571 588.7824866584067 75.25 0.42958 75.296 75.127 75.557 0.045959 44 20 3 0 0 0 0.14917 2 41444 41444;41546 39.957 20.7 1 10184000 14786 4995 10057 10257 17797;17798 17797 -0.030862844848115856 FVFDASSIQY 10 Unmodified _FVFDASSIQY_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7822875976562 2 588.782222 1175.54989 0.9237 0.00054386 -2.5194 -0.0014834 -1.5957 -0.00093951 588.7817126193384 83.544 0.50034 77.368 77.125 77.625 -6.1757 44 25 2 0 0 0 0.14917 2 54886 54886;55013 39.957 24.11 1 48455000 14787 4995 10057 10257 17799;17800 17799 -0.030862844848115856 FVFFGGSLGF 10 Unmodified _FVFFGGSLGF_ 0 0 0 ENST00000306376.9_1_3:185764220-185764328:-|nuORF ENST00000306376.9_1_3:185764220-185764328:-|nuORF ENST00000306376.9_1_3:185764220-185764328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.8517150878906 3 359.851649 1076.53312 0.66294 0.00023856 0.055977 2.0143E-05 0.71891 0.0002587 359.851630175129 66.802 0.37421 66.818 66.671 67.045 0.015495 44 17 3 0 0 0 0.62068 1 36629 36629 5.7834 0 1 9537900 14788 11628 10058 10258 17801 17801 -0.0020874058009212604 FVFNIVEF 8 Unmodified _FVFNIVEF_ 0 0 0 ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR ENSG00000124275|ENST00000440940|MTRR ENSG00000124275|ENST00000440940|MTRR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7312622070312 2 507.768386 1013.52222 0.46936 0.00023832 4.1495 0.002107 4.6188 0.0023453 507.77151692730735 44.236 0.56627 39.384 39.202 39.768 -4.852 57 40 2 0 0 0 8.7369 1 27080 27080 10.183 4.423 1 15618000 14789 3772 10059 10259 17802 17802 0.015998570456190464 FVFNIVEF 8 Unmodified _FVFNIVEF_ 0 0 0 ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR ENSG00000124275|ENST00000440940|MTRR ENSG00000124275|ENST00000440940|MTRR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 507.768386 1013.52222 -0.33276 -0.00016897 7.1042 0.0036073 6.7714 0.0034383 507.7719743691241 39.748 0.20457 39.451 39.308 39.512 -0.29716 0.03355 0.00039519 NaN 10.183 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1798600 14790 3772 10059 10259 0.015998570456190464 FVFPGELLL 9 Unmodified _FVFPGELLL_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7992553710938 2 517.799686 1033.58482 -0.54054 -0.00027989 -0.045811 -2.3721E-05 -0.58635 -0.00030361 517.7997776661143 101.58 0.25697 101.53 101.35 101.61 -0.045853 14 8 3 0 0 0 0.37804 1 56446 56446 13.508 4.1604 1 24153000 14791 2298 10060 10260 17803 17803 0.06937003113830542 FVFPGELLL 9 Unmodified _FVFPGELLL_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7996215820312 2 517.799686 1033.58482 0.78597 0.00040697 -0.31379 -0.00016248 0.47218 0.00024449 517.799371719214 102 0.14197 95.822 95.735 95.877 -6.1757 24 6 5 0 0 0 0.03327 1 68455 68455 53.576 19.473 1 149580000 14792 2298 10060 10260 17804 17804 0.06937003113830542 FVFPLAQIFS 10 Unmodified _FVFPLAQIFS_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.82470703125 2 584.823692 1167.63283 2.5196 0.0014735 -1.7392 -0.0010171 0.78037 0.00045638 584.8229802468757 95.659 0.40525 95.663 95.46 95.865 0.004158 31 15 3 0 0 0 0.16361 1 53176 53176 38.176 9.6811 1 2979400 14793 8860 10061 10261 17805 17805 0.05572077033843925 FVFSFPVSV 9 Unmodified _FVFSFPVSV_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7763671875 2 514.776211 1027.53787 1.0581 0.00054468 -0.027115 -1.3958E-05 1.031 0.00053072 514.776082934074 101.2 0.10517 95.029 94.974 95.079 -6.1757 16 6 4 0 0 0 0.03327 1 67874 67874 53.576 35.441 1 42674000 14794 3548 10062 10262 17806 17806 0.02520143562674093 FVFTEKEGTY 10 Unmodified _FVFTEKEGTY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.79638671875 2 610.795329 1219.5761 0.35226 0.00021516 0.83157 0.00050792 1.1838 0.00072308 610.7954772500901 46.661 0.27911 46.661 46.461 46.74 0 30 12 4 0 0 0 0.20962 1 25496 25496 32.786 11.249 1 4176200 14795 3769 10063 10263 17807 17807 -0.024900153133330605 FVFTEKEGTY 10 Unmodified _FVFTEKEGTY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7971801757812 2 610.795329 1219.5761 0.70863 0.00043283 0.24251 0.00014812 0.95113 0.00058095 610.795502968397 47.029 0.2906 46.692 46.503 46.794 -0.33664 23 14 2 0 0 0 0.0575 1 25154 25154 56.177 34.43 1 6257000 14796 3769 10063 10263 17808 17808 -0.024900153133330605 FVFTEKEGTY 10 Unmodified _FVFTEKEGTY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.795166015625 2 610.795329 1219.5761 0.78785 0.00048122 0.59994 0.00036644 1.3878 0.00084766 610.7953291158308 52.533 0.2406 46.799 46.652 46.892 -5.7345 25 12 3 0 0 0 0.012329 1 33166 33166 83.429 37.729 1 27728000 14797 3769 10063 10263 17809 17809 -0.024900153133330605 FVFWHNGSF 9 Unmodified _FVFWHNGSF_ 0 0 0 REV__nc|ENSG00000126251|O15529|GPR42 REV__nc|ENSG00000126251|O15529|GPR42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8473510742188 3 380.846898 1139.51886 0.12289 4.68E-05 0.35597 0.00013557 0.47885 0.00018237 380.8471100687447 66.218 0.48271 65.735 65.563 66.046 -0.48323 61 25 4 0 0 0 0.58466 1 36200 36200 1.1933 0 1 11946000 + 14798 19541 10064 10264 17810 17810 -0.04531393008392115 FVFWRSRY 8 Unmodified _FVFWRSRY_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2921142578125 2 580.803626 1159.5927 NaN NaN NaN NaN NaN NaN NaN 58.214 1 58.214 57.714 58.714 0 0 0 0 0.97444 1 32412 32412 2.3027 0.24298 1 + 14799 22192 10065 10265 17811 17811 0.019285751539655394 FVFWSDGPG 9 Unmodified _FVFWSDGPG_ 0 0 0 ENST00000551380.5_3_19:58513935-58514112:-|nuORF ENST00000551380.5_3_19:58513935-58514112:-|nuORF ENST00000551380.5_3_19:58513935-58514112:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2331848144531 2 506.232168 1010.44978 0.43621 0.00022082 0.54402 0.0002754 0.98022 0.00049622 506.2323422604775 89.951 0.27244 89.951 89.822 90.095 0 37 21 2 0 0 0 0.58865 1 49726 49726 2.0598 0 1 465040 14800 15172 10066 10266 17812 17812 -0.055024770279374025 FVGDSPMGMIF 11 Unmodified _FVGDSPMGMIF_ 0 0 0 REV__ENST00000436317.1_1_2:172300071-172303972:+|nuORF REV__ENST00000436317.1_1_2:172300071-172303972:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8523254394531 3 400.852444 1199.5355 -0.32892 -0.00013185 0.34396 0.00013788 0.015038 6.0279E-06 400.8527576586327 20.551 0.20013 20.58 20.486 20.686 0.028355 15 9 2 0 0 0 0.72952 1 10408 10408 0.50596 0 1 618070 + 14801 27031 10067 10267 17813 17813 -0.05628396228962629 FVGGLSWD 8 Unmodified _FVGGLSWD_ 0 0 0 nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB nc|ENSG00000197451|Q99729-3|HNRNPAB nc|ENSG00000197451|Q99729-3|HNRNPAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7138061523438 2 440.713611 879.412668 0.25748 0.00011347 -0.61422 -0.0002707 -0.35674 -0.00015722 440.71346062833044 61.631 0.25494 61.631 61.497 61.751 0 19 11 2 0 0 0 0.80232 1 34329 34329 5.2307 0 1 1367100 14802 9958 10068 10268 17814 17814 -0.03186148573718128 FVGSSHDQVY 10 Unmodified _FVGSSHDQVY_ 0 0 0 REV__nc|ENSG00000154556|O94875-5|SORBS2 REV__nc|ENSG00000154556|O94875-5|SORBS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.761474609375 2 569.76182 1137.50909 -0.35238 -0.00020077 0.0049969 2.847E-06 -0.34739 -0.00019793 569.7619004472964 33.999 0.28122 33.999 33.822 34.103 0 48 13 5 0 0 0 0.44373 1 17822 17822 19.257 0 1 106890000 + 14803 21234 10069 10269 17815 17815 -0.05416625804423347 FVGSSHDQVY 10 Unmodified _FVGSSHDQVY_ 0 0 0 REV__nc|ENSG00000154556|O94875-5|SORBS2 REV__nc|ENSG00000154556|O94875-5|SORBS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7630615234375 2 569.76182 1137.50909 -0.097079 -5.5312E-05 0.61654 0.00035128 0.51946 0.00029597 569.7621876804532 34.177 0.38599 33.986 33.744 34.13 -0.19131 43 14 4 0 0 0 0.44373 1 17794 17794 19.257 0 1 23967000 + 14804 21234 10069 10269 17816 17816 -0.05416625804423347 FVGSSHDQVY 10 Unmodified _FVGSSHDQVY_ 0 0 0 REV__nc|ENSG00000154556|O94875-5|SORBS2 REV__nc|ENSG00000154556|O94875-5|SORBS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7625122070312 2 569.76182 1137.50909 0.44682 0.00025458 0.32666 0.00018612 0.77348 0.0004407 569.7622659448492 38.626 0.38628 34.258 34.03 34.416 -4.3689 60 24 3 0 0 0 0.44373 1 22861 22861 19.257 0 1 40963000 + 14805 21234 10069 10269 17817 17817 -0.05416625804423347 FVGVYIVIEI 10 Unmodified _FVGVYIVIEI_ 0 0 0 ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 ENSG00000198695|ENST00000361681|MT-ND6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.7721557617188 3 384.561876 1150.6638 0.53132 0.00020432 0.79854 0.00030709 1.3299 0.00051141 384.8962208487036 26.12 0.2268 23.169 23.003 23.23 -2.9511 20 13 2 0 0 0 0.23946 1 14363 14363 3.5871 0.26742 1 7022500 14806 10125 10070 10270 17818 17818 0.09449230348059245 FVHDIDEMGW 10 Unmodified _FVHDIDEMGW_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.7698974609375 2 624.771331 1247.52811 NaN NaN NaN NaN NaN NaN NaN 67.298 1 67.298 66.798 67.798 0 0 0 0 0.96627 1 37530 37530 4.3292 0 1 + 14807 18759 10071 10271 17819 17819 -0.08575412505047098 FVHDLVLYL 9 Unmodified _FVHDLVLYL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8165283203125 2 559.815867 1117.61718 0.69365 0.00038832 0.10346 5.7917E-05 0.79711 0.00044623 559.8157020517048 84.844 0.42075 84.343 84.135 84.556 -0.50055 36 17 3 0 0 0 0.2143 1 46386 46386 21.747 10.923 1 3424700 14808 5318;130;1026 10072 10272 17820 17820 0.06307790516780187 FVHDLVLYL 9 Unmodified _FVHDLVLYL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.814697265625 2 559.815867 1117.61718 0.23758 0.000133 -0.32982 -0.00018464 -0.092238 -5.1636E-05 559.815492650904 84.135 0.37592 84.198 83.998 84.374 0.063171 35 15 3 0 0 0 0.013472 2 46484 46484;46593 70.716 47.567 1 75648000 14809 5318;130;1026 10072 10272 17821;17822 17821 0.06307790516780187 FVHDLVLYL 9 Unmodified _FVHDLVLYL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8167724609375 2 559.815867 1117.61718 0.37058 0.00020745 1.4081 0.00078826 1.7786 0.00099572 559.816882290933 99.037 0.36359 92.861 92.576 92.94 -6.1757 58 25 3 0 0 0 0.095405 1 65818 65818 34.102 5.6156 1 638730000 14810 5318;130;1026 10072 10272 17823 17823 0.06307790516780187 FVHDLVLYL 9 Unmodified _FVHDLVLYL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.815867 1117.61718 0.69365 0.00038832 0.10346 5.7917E-05 0.79711 0.00044623 559.8157020517048 84.844 0.42075 84.343 84.135 84.556 -0.50055 0.072738 0.00026103 NaN 70.716 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3424700 14811 5318;130;1026 10072 10272 0.06307790516780187 FVHDQPGSKL 10 Unmodified _FVHDQPGSKL_ 0 0 0 REV__ENSG00000100600|ENST00000334869|LGMN REV__ENSG00000100600|ENST00000334869|LGMN MSMS AL20221201_MKP_PDAC_01 4 564.2992553710938 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 33.804 1 29.819 29.319 30.319 -3.9853 0 0 0 0.40102 1 19418 19418 31.268 1.4278 1 + 14812 18088 10073 10273 17824 17824 0.018882438462242135 FVHISWVSF 9 Unmodified _FVHISWVSF_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2933349609375 2 561.292559 1120.57057 4.2478 0.0023842 -0.41675 -0.00023392 3.831 0.0021503 561.2920357123235 98.444 0.20662 98.416 98.299 98.506 -0.028282 18 7 3 0 0 0 0.37804 1 54674 54674 13.508 0.97634 1 913160 14813 6602 10074 10274 17825 17825 0.01510350685521189 FVHPRKRK 8 Unmodified _FVHPRKRK_ 0 0 0 REV__nc|ENSG00000106459|Q16656-2|NRF1 REV__nc|ENSG00000106459|Q16656-2|NRF1 MSMS AL20221201_MKP_PDAC_01 4 534.3316650390625 2 534.332885 1066.65122 NaN NaN NaN NaN NaN NaN NaN 109.88 1 103.7 103.2 104.2 -6.1757 0 0 0 0.97444 1 73358 73358 0.79363 0.19213 1 + 14814 18508 10075 10275 17826 17826 0.12055676519071312 FVHSNDMTGY 10 Unmodified _FVHSNDMTGY_ 0 0 0 REV__NEUROD1|p.S236N|1|0.16|ENSG00000162992|chr2:181678154-181678154|C/T|missense_variant REV__NEUROD1|p.S236N|1|0.16|ENSG00000162992|chr2:181678154-181678154|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7457275390625 2 585.747856 1169.48116 0.43096 0.00025243 -2.9794 -0.0017452 -2.5485 -0.0014928 585.7460195080403 73.941 0.25913 73.941 73.786 74.045 0 15 10 2 0 0 0 0.69064 1 41162 41162 3.9444 0.94915 1 301380 + 14815 30056 10076 10276 17827 17827 -0.09680272056152717 FVHWERQL 8 Unmodified _FVHWERQL_ 0 0 0 ENST00000359246.8_1_9:96441463-96441547:+|nuORF ENST00000359246.8_1_9:96441463-96441547:+|nuORF ENST00000359246.8_1_9:96441463-96441547:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7937622070312 2 557.793258 1113.57196 0.68515 0.00038217 0.5807 0.00032391 1.2658 0.00070608 557.7930852043797 82.589 0.59061 76.413 76.086 76.677 -6.1757 83 33 3 0 0 0 0.72953 1 54130 54130 14.582 2.0501 1 96112000 14816 12142 10077 10277 17828 17828 0.019719847742635466 FVICQLGNFSI 11 Unmodified _FVICQLGNFSI_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000594958.1_1_19:14675777-14676588:+|nuORF;ENST00000593775.5_1_19:14675534-14676680:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2157897949219 3 414.218003 1239.63218 0.48399 0.00020048 0.0073708 3.0531E-06 0.49136 0.00020353 414.2180050038939 16.85 0.22202 14.293 14.193 14.415 -2.557 92 35 4 0 0 0 0.5229 1 8720 8720 8.7518 0.90574 1 18727000 14817 1707 10078 10278 17829 17829 0.02194914322490149 FVIDLQTRL 9 Unmodified _FVIDLQTRL_ 0 0 0 nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;ENST00000471635.5_1_20:34297104-34301010:-|nuORF nc|ENSG00000131051|Q14498-3|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2922973632812 2 552.824224 1103.63389 0.32853 0.00018162 2.8473 0.0015741 3.1758 0.0017557 552.8259370286096 73.588 0.22086 73.632 73.471 73.692 0.043983 15 9 2 0 0 0 0.20554 1 40570 40570 9.3831 1.473 1 2887700 14818 4293 10079 10279 17830 17830 0.08622291402753035 FVIDLSHDHTV 11 Unmodified _FVIDLSHDHTV_ 0 0 0 REV__nc|ENSG00000144619|Q8IWV2-3|CNTN4 REV__nc|ENSG00000144619|Q8IWV2-3|CNTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8258056640625 2 641.824952 1281.63535 0.46907 0.00030106 1.6362 0.0010501 2.1052 0.0013512 642.3271841831285 69.446 0.23289 69.477 69.431 69.664 0.030914 18 13 2 0 0 0 0.69509 1 38236 38236 1.1933 0.12188 1 8612000 + 14819 20719 10080 10280 17831 17831 0.00579880700843205 FVIGMYIPAF 10 Unmodified _FVIGMYIPAF_ 0 0 0 REV__SLC22A2|p.V38M|1|0.05|ENSG00000112499|chr6:160258646-160258646|C/T|missense_variant REV__SLC22A2|p.V38M|1|0.05|ENSG00000112499|chr6:160258646-160258646|C/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.7710571289062 2 579.306821 1156.59909 1.033 0.00059841 0.89294 0.00051728 1.9259 0.0011157 579.3070328244042 69.034 0.56063 62.858 62.572 63.132 -6.1757 33 24 2 0 0 0 0.22327 1 45253 45253 7.9102 0.62092 1 20083000 + 14820 30100 10081 10281 17832 17832 0.027053322704432503 FVIRDSSSY 9 Unmodified _FVIRDSSSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2666015625 2 537.266739 1072.51892 0.24746 0.00013295 0.54997 0.00029548 0.79743 0.00042843 537.2667487483782 37.298 0.82729 37.298 36.818 37.645 0 134 42 6 0 0 0 0.015688 1 19868 19868 67.838 40.209 1 40382000 14821 4346 10082 10282 17833 17833 -0.014434377990482972 FVIRDSSSY 9 Unmodified _FVIRDSSSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2689819335938 2 537.266739 1072.51892 -0.17807 -9.5671E-05 1.0284 0.00055255 0.85038 0.00045688 537.2672300086886 37.631 0.25546 37.359 37.206 37.462 -0.27133 33 10 5 0 0 0 0.0093064 1 19745 19745 83.429 43.479 1 32479000 14822 4346 10082 10282 17834 17834 -0.014434377990482972 FVIRDSSSY 9 Unmodified _FVIRDSSSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2677612304688 2 537.266739 1072.51892 -0.14809 -7.9564E-05 2.3018 0.0012367 2.1537 0.0011571 537.2678670113462 37.296 0.20106 37.317 37.174 37.375 0.021545 17 8 3 0 0 0 0.015688 1 19773 19773 67.838 38.757 1 2578200 14823 4346 10082 10282 17835 17835 -0.014434377990482972 FVIRDSSSY 9 Unmodified _FVIRDSSSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.267333984375 2 537.266739 1072.51892 0.90366 0.00048551 -0.39138 -0.00021027 0.51228 0.00027523 537.2664666977394 42.53 0.68224 37.846 37.544 38.226 -4.6846 144 44 5 0 0 0 0.0082548 2 25615 25615;25742 96.367 61.965 1 154510000 14824 4346 10082 10282 17836;17837 17836 -0.014434377990482972 FVITVTAIKQ 10 Unmodified _FVITVTAIKQ_ 0 0 0 ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B;ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ENSG00000068650|ENST00000375645|ATP11A;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MSMS AL20221201_MKP_PDAC_01 4 560.3430786132812 2 560.342249 1118.66995 NaN NaN NaN NaN NaN NaN NaN 107.73 1 101.55 101.05 102.05 -6.1757 0 0 0 0.99514 1 72034 72034 1.1933 0.50296 1 14825 2003;39 10083 10283 17838 17838 0.11535748579581195 FVKAASVL 8 Unmodified _FVKAASVL_ 0 0 0 REV__ENSG00000070915|ENST00000563236|SLC12A3 REV__ENSG00000070915|ENST00000563236|SLC12A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.75830078125 2 417.757821 833.501089 1.055 0.00044074 0.21339 8.9146E-05 1.2684 0.00052989 417.7578573304181 30.199 0.18519 26.702 26.612 26.797 -3.497 12 8 2 0 0 0 0.57045 1 17052 17052 28.487 1.6032 1 10283000 + 14826 17486 10084 10284 17839 17839 0.07767891736750698 FVKCHYHQF 9 Unmodified _FVKCHYHQF_ 0 0 0 REV__ENST00000314393.5_1_8:123985618-123985864:+|nuORF REV__ENST00000314393.5_1_8:123985618-123985864:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.787841796875 2 604.787118 1207.55968 0.66033 0.00039936 -0.98779 -0.0005974 -0.32746 -0.00019804 604.7867250769696 71.635 0.31526 71.674 71.535 71.85 0.039024 44 14 4 0 0 0 0.53666 1 39523 39523 5.2307 0.33366 1 12457000 + 14827 25446 10085 10285 17840 17840 -0.03579374960418136 FVKESHLLI 9 Unmodified _FVKESHLLI_ 0 0 0 ENST00000524217.1_1_8:25298150-25301849:-|nuORF ENST00000524217.1_1_8:25298150-25301849:-|nuORF ENST00000524217.1_1_8:25298150-25301849:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.32177734375 2 543.321317 1084.62808 1.2233 0.00066462 0.01412 7.6719E-06 1.2374 0.00067229 543.3208269801754 96.545 0.37206 90.369 90.185 90.557 -6.1757 48 21 3 0 0 0 0.1773 1 63912 63912 25.399 3.6527 1 32185000 14828 14775 10086 10286 17841 17841 0.08915192891095103 FVKIFFQEL 9 Unmodified _FVKIFFQEL_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2236328125 3 390.890104 1169.64848 0.28208 0.00011026 -1.3983 -0.00054656 -1.1162 -0.0004363 391.22402584651394 59.256 0.36503 59.203 58.888 59.253 -0.053062 24 17 2 0 0 0 0.58499 1 32310 32310 2.2828 0.5405 1 2909700 14829 7006 10087 10287 17842 17842 0.07044363550903654 FVKKLLWRVLR 11 Unmodified _FVKKLLWRVLR_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 729.4780883789062 2 729.477006 1456.93946 NaN NaN NaN NaN NaN NaN NaN 81.952 1 82.012 81.512 82.512 0.059929 0 0 0 0.94307 1 45322 45322 0.30703 0 1 + 14830 24097 10088 10288 17843 17843 0.22926726986611357 FVKKSFWD 8 Unmodified _FVKKSFWD_ 0 0 0 REV__ENST00000460309.1_2_12:9840531-9840597:+|nuORF REV__ENST00000460309.1_2_12:9840531-9840597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7799682617188 2 528.779285 1055.54402 1.0134 0.00053587 0.68428 0.00036184 1.6977 0.00089771 528.7796483131426 49.762 0.33885 49.713 49.568 49.907 -0.048824 26 16 2 0 0 0 0.70102 1 26882 26882 21.747 4.8044 1 3650400 + 14831 27296 10089 10289 17844 17844 0.018466617941840013 FVKLIHIPINN 11 Unmodified _FVKLIHIPINN_ 0 0 0 ENST00000461536.1_1_7:54823470-54826890:-|nuORF;ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.5998840332031 3 436.599324 1306.77614 1.1049 0.0004824 -0.21071 -9.1995E-05 0.8942 0.00039041 436.9335355983007 87.4 0.30779 81.225 81.036 81.344 -6.1757 26 16 2 0 0 0 0.3535 1 57594 57594 23.964 20.377 1 14210000 14832 4405 10090 10290 17845 17845 0.13502504144958039 FVKLSQPFG 9 Unmodified _FVKLSQPFG_ 0 0 0 nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3-2|TEX11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7876892089844 2 511.78711 1021.55967 0.74324 0.00038038 -0.63693 -0.00032597 0.10631 5.4408E-05 511.7866134829092 47.985 0.23833 47.947 47.827 48.066 -0.038647 28 11 3 0 0 0 0.08691 1 25856 25856 36.127 3.8215 1 10562000 14833 3519 10091 10291 17846 17846 0.04974948311235039 FVKLSQPFG 9 Unmodified _FVKLSQPFG_ 0 0 0 nc|ENSG00000120498|Q8IYF3-2|TEX11;ENSG00000120498|ENST00000374333|TEX11;nc|ENSG00000120498|Q8IYF3|TEX11 nc|ENSG00000120498|Q8IYF3-2|TEX11 nc|ENSG00000120498|Q8IYF3-2|TEX11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7874145507812 2 511.78711 1021.55967 0.40672 0.00020816 0.25995 0.00013304 0.66667 0.0003412 511.7871598452459 53.19 0.32377 47.386 47.318 47.642 -5.8042 37 20 2 0 0 0 0.070838 1 33726 33726 39.957 9.7325 1 113890000 14834 3519 10091 10291 17847 17847 0.04974948311235039 FVKPLILPCEL 11 Unmodified _FVKPLILPCEL_ 0 0 0 REV__nc|ENSG00000204406|Q9P267-2|MBD5 REV__nc|ENSG00000204406|Q9P267-2|MBD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8742065429688 2 636.375235 1270.73592 0.9784 0.00062263 1.8776 0.0011948 2.856 0.0018175 636.3764067453263 96.122 0.29906 89.946 89.785 90.084 -6.1757 33 17 3 0 0 0 0.42108 1 63622 63622 20.415 6.0092 1 18461000 + 14835 24166 10092 10292 17848 17848 0.11137821430202166 FVKQKASQS 9 Unmodified _FVKQKASQS_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7874145507812 2 511.785099 1021.55564 0.31042 0.00015887 1.5343 0.00078524 1.8447 0.0009441 511.78550477281135 48.311 0.47107 47.939 47.691 48.162 -0.37172 51 23 3 0 0 0 0.044011 1 25880 25880 47.749 5.9091 1 18333000 14836 9440 10093 10293 17849 17849 0.04572858817527958 FVKQKASQS 9 Unmodified _FVKQKASQS_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 511.785099 1021.55564 0.74324 0.00038038 3.2932 0.0016854 4.0364 0.0020658 511.7866134829092 47.985 0.23833 47.947 47.827 48.066 -0.038647 0.003573 0.00031332 NaN 47.749 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 10562000 14837 9440 10093 10293 0.04572858817527958 FVKRMIFA 8 Unmodified _FVKRMIFA_ 0 0 0 REV__ENST00000507209.5_1_4:187131803-187131959:+|nuORF REV__ENST00000507209.5_1_4:187131803-187131959:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2610778808594 2 506.294048 1010.57354 0.47037 0.00023815 2.5773 0.0013049 3.0476 0.001543 506.29537690684174 61.497 0.16322 61.497 61.366 61.529 0 10 7 2 0 0 0 8.7369 1 34303 34303 5.7604 0 1 983160 + 14838 28099 10094 10294 17850 17850 0.06867902538681392 FVKSNMFG 8 Unmodified _FVKSNMFG_ 0 0 0 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2330322265625 2 465.231113 928.447674 NaN NaN NaN NaN NaN NaN NaN 16.42 1 16.42 15.92 16.92 0 0 0 0 0.97444 1 8004 8004 2.3027 0 1 14839 8727 10095 10295 17851 17851 -0.019412290374020813 FVKTAPENY 9 Unmodified _FVKTAPENY_ 0 0 0 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7708740234375 2 534.771657 1067.52876 -0.14314 -7.6548E-05 0.11941 6.3856E-05 -0.023734 -1.2692E-05 534.7715886019688 51.596 0.35625 51.163 50.968 51.325 -0.43367 53 18 4 0 0 0 0.41742 1 27765 27765 11.64 0 1 35254000 14840 8607 10096 10296 17852 17852 -0.002302497936625514 FVKVMDLP 8 Unmodified _FVKVMDLP_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000007350;REV__CON__P01030 REV__CON__P01030 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7637939453125 2 474.764789 947.515025 NaN NaN NaN NaN NaN NaN NaN 37.025 1 37.047 36.547 37.547 0.021545 0 0 0 0.97444 1 19640 19640 2.3027 0.4585 1 + + 14841 16825;16835 10097 10297 17853 17853 0.039168011735455366 FVKWPVIT 8 Unmodified _FVKWPVIT_ 0 0 0 REV__nc|ENSG00000114423|Q13191-3|CBLB REV__nc|ENSG00000114423|Q13191-3|CBLB MSMS AL20221201_MKP_PDAC_01 4 494.8236083984375 2 495.294571 988.574589 NaN NaN NaN NaN NaN NaN NaN 104.74 1 98.564 98.064 99.064 -6.1757 0 0 0 0.97444 1 70121 70121 2.5775 0.27475 1 + 14842 18912 10098 10298 17854 17854 0.07984440179222929 FVLDKVPFL 9 Unmodified _FVLDKVPFL_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3209228515625 2 539.320786 1076.62702 0.58129 0.0003135 -0.26609 -0.00014351 0.3152 0.00017 539.3206470305477 90.457 0.25796 90.499 90.382 90.64 0.042183 13 8 2 0 0 0 0.042911 1 50357 50357 48.346 16.04 1 5064600 14843 447 10099 10299 17855 17855 0.09176978522191348 FVLDKVPFL 9 Unmodified _FVLDKVPFL_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3215942382812 2 539.320786 1076.62702 0.78171 0.00042159 0.79696 0.00042982 1.5787 0.00085141 539.3212604231741 99.509 0.15589 93.333 93.243 93.399 -6.1757 17 9 2 0 0 0 0.022193 1 66313 66313 61.357 9.0891 1 63233000 14844 447 10099 10299 17856 17856 0.09176978522191348 FVLGLLHQGY 10 Unmodified _FVLGLLHQGY_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8824157714844 3 382.88172 1145.62333 1.3881 0.00053149 1.5054 0.00057638 2.8935 0.0011079 382.8820019232425 91.515 0.28738 85.339 85.165 85.452 -6.1757 18 15 2 0 0 0 0.65502 1 60507 60507 4.1895 0 1 8972100 14845 7956 10100 10300 17857 17857 0.0563430874833557 FVLGWFDYLH 10 Unmodified _FVLGWFDYLH_ 0 0 0 REV__ENST00000478380.5_1_9:286487-312499:+|nuORF REV__ENST00000478380.5_1_9:286487-312499:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8852233886719 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 26.483 1 26.51 26.01 27.01 0.026951 0 0 0 0.99897 1 13737 13737 0.77653 0 1 + 14846 27634 10101 10301 17858 17858 -0.002097085972309287 FVLGWFDYLH 10 Unmodified _FVLGWFDYLH_ 0 0 0 REV__ENST00000478380.5_1_9:286487-312499:+|nuORF REV__ENST00000478380.5_1_9:286487-312499:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8846435546875 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 14.962 1 12.435 11.935 12.935 -2.5273 0 0 0 0.99897 1 7638 7638 0.77653 0 1 + 14847 27634 10101 10301 17859 17859 -0.002097085972309287 FVLHSCFRFI 10 Unmodified _FVLHSCFRFI_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 423.2256469726562 3 423.558471 1267.65358 1.3166 0.00055766 1.5137 0.00064115 2.8303 0.0011988 423.559363265722 42.581 0.24689 37.896 37.794 38.041 -4.6846 21 16 2 0 0 0 0.23634 1 25758 25758 1.7423 1.2878 1 7905800 14848 8933 10102 10302 17860 17860 0.03046344141876034 FVLIITYVPY 10 Unmodified _FVLIITYVPY_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.9051208496094 3 409.905642 1226.6951 0.91786 0.00037624 -1.0569 -0.00043323 -0.13905 -5.6997E-05 409.9051008108483 31.892 0.51403 28.197 27.983 28.497 -3.6958 94 28 4 0 0 0 0.66569 2 18039 18039;18297 6.1918 3.4567 1 98756000 14849 9915 10103 10303 17861;17862 17861 0.09081803382196085 FVLKEGVEY 9 Unmodified _FVLKEGVEY_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2908325195312 2 542.289682 1082.56481 -0.42759 -0.00023188 2.0087 0.0010893 1.5811 0.00085744 542.2905706745214 48.747 0.38238 48.747 48.491 48.874 0 49 17 4 0 0 0 0.036857 1 26751 26751 51.63 24.746 1 17190000 14850 5343 10104 10304 17863 17863 0.026832073831883463 FVLKEGVEY 9 Unmodified _FVLKEGVEY_ 0 0 0 nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA nc|ENSG00000141522|P52565-2|ARHGDIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.29052734375 2 542.289682 1082.56481 0.76049 0.00041241 0.44163 0.00023949 1.2021 0.0006519 542.2899514661236 54.822 0.423 48.957 48.763 49.186 -5.8653 77 25 4 0 0 0 0.010301 2 34788 34788;34929 79.596 31.25 1 96697000 14851 5343 10104 10304 17864;17865 17864 0.026832073831883463 FVLKPATR 8 Unmodified _FVLKPATR_ 0 0 0 ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF ENST00000601372.5_1_19:8935730-8942974:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2895812988281 2 466.28982 930.565087 -0.12667 -5.9064E-05 -0.31901 -0.00014875 -0.44568 -0.00020782 466.2895423795798 51.522 0.27444 51.468 51.342 51.616 -0.053871 25 13 3 0 0 0 0.78031 1 27898 27898 10.074 0 1 4091800 14852 15742 10105 10305 17866 17866 0.09702671893694514 FVLLNPNS 8 Unmodified _FVLLNPNS_ 0 0 0 ENST00000430877.5_1_3:33853568-33855060:+|nuORF ENST00000430877.5_1_3:33853568-33855060:+|nuORF ENST00000430877.5_1_3:33853568-33855060:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 903.4979858398438 1 903.493444 902.486168 0.68614 0.00061992 2.165 0.001956 2.8511 0.002576 903.495785823762 102 0.096878 95.822 95.757 95.854 -6.1757 6 4 2 0 0 0 0.28079 1 68478 68478 57.471 0.93007 1 3803000 14853 13250 10106 10306 17867 17867 0.031023998687601306 FVLLYEWVL 9 Unmodified _FVLLYEWVL_ 0 0 0 ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4 ENSG00000128829|ENST00000263791|EIF2AK4 ENSG00000128829|ENST00000263791|EIF2AK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.33251953125 2 591.333893 1180.65323 NaN NaN NaN NaN NaN NaN NaN 63.161 1 62.675 62.175 63.175 -0.48617 0 0 0 0.7243 1 34443 34443 8.5933 1.304 1 14854 4093 10107 10307 17868 17868 0.07013247693657831 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-6|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF nc|ENSG00000182149|P53990-2|IST1 nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7907409667969 2 500.789318 999.564084 2.1773 0.0010904 -0.41239 -0.00020652 1.7649 0.00088386 500.7888780737508 95.588 0.38446 95.592 95.379 95.764 0.004158 34 14 3 0 0 0 0.026094 2 53057 53057;53170 57.471 30.588 1 4168200 14855 9022 10108 10308 17869;17870 17869 0.06428412734157973 FVLPELPSV 9 Unmodified _FVLPELPSV_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-6|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF nc|ENSG00000182149|P53990-2|IST1 nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7889709472656 2 500.789318 999.564084 1.4669 0.00073462 -0.64285 -0.00032193 0.82408 0.00041269 500.7889798525598 100.12 0.26872 93.944 93.819 94.088 -6.1757 43 16 4 0 0 0 0.019303 1 66842 66842 64.236 26.085 1 108650000 14856 9022 10108 10308 17871 17871 0.06428412734157973 FVLQHICYI 9 Carbamidomethyl (C) _FVLQHIC(Carbamidomethyl (C))YI_ FVLQHIC(1)YI FVLQHIC(60)YI 0 1 0 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1;nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 MSMS AL20221201_MKP_PDAC_01 4 596.8136596679688 2 596.812802 1191.61105 NaN NaN NaN NaN NaN NaN NaN 87.311 1 81.135 80.635 81.635 -6.1757 0 0 0 0.043758 1 57571 57571 60.39 42.255 1 14857 4450 10109 10309 17872 17872 460 0.022909490136271415 FVLRGNMLF 9 Unmodified _FVLRGNMLF_ 0 0 0 nc|ENSG00000198324|Q8N4B1-4|PHETA1;ENSG00000198324|ENST00000683047|PHETA1;nc|ENSG00000198324|Q8N4B1-3|PHETA1 nc|ENSG00000198324|Q8N4B1-4|PHETA1 nc|ENSG00000198324|Q8N4B1-4|PHETA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3040771484375 2 548.802237 1095.58992 0.9027 0.0004954 -0.12935 -7.0986E-05 0.77335 0.00042442 549.3034163451458 50.024 0.52453 44.485 44.201 44.725 -5.5391 79 33 3 0 0 0 0.20428 1 31171 31171 24.674 24.674 1 44539000 14858 10076 10110 10310 17873 17873 0.04594983704760125 FVLWLLSPY 9 Unmodified _FVLWLLSPY_ 0 0 0 nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4;ENST00000519875.1_1_8:21997445-21997756:-|nuORF nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MSMS AL20221201_MKP_PDAC_01 4 569.322509765625 2 569.320786 1136.62702 NaN NaN NaN NaN NaN NaN NaN 102.45 1 96.276 95.776 96.776 -6.1757 0 0 0 0.84211 1 68752 68752 4.3292 0 1 14859 7768 10111 10311 17874 17874 0.06416978522202044 FVMETFVHL 9 Oxidation (M) _FVM(Oxidation (M))ETFVHL_ FVM(1)ETFVHL FVM(47)ETFVHL 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7835693359375 2 569.78371 1137.55287 0.36429 0.00020757 -0.6291 -0.00035845 -0.26481 -0.00015088 570.2850497808155 65.414 0.33595 64.929 64.705 65.041 -0.48428 34 15 3 0 0 0 0.045537 1 35649 35649 46.921 33.015 1 3436600 14860 2352 10112 10312 17875 17875 408 -0.010407326316453691 FVMETFVHL 9 Oxidation (M) _FVM(Oxidation (M))ETFVHL_ 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.78371 1137.55287 0.6668 0.00037993 0.4386 0.00024991 1.1054 0.00062984 569.7835135862009 64.875 0.2792 64.875 64.718 64.997 1.5259E-05 -0.027123 0.00052306 NaN 46.921 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2836800 14861 2352 10112 10312 408 -0.010407326316453691 FVMETFVHL 9 Unmodified _FVMETFVHL_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.288818359375 2 561.786253 1121.55795 1.4791 0.00083096 0.2351 0.00013207 1.7142 0.00096304 561.786391900044 97.163 0.29201 90.988 90.845 91.137 -6.1757 31 16 3 0 0 0 0.0089973 1 64351 64351 86.121 42.263 1 23420000 14862 2352 10112 10313 17876 17876 0.0020357123098619923 FVMPCYEKF 9 Unmodified _FVMPCYEKF_ 0 0 0 REV__nc|ENSG00000276293|P78356-2|PIP4K2B;REV__nc|ENSG00000150867|P48426-2|PIP4K2A REV__nc|ENSG00000150867|P48426-2|PIP4K2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2671508789062 2 582.266838 1162.51912 0.33834 0.00019701 -0.94 -0.00054733 -0.60165 -0.00035032 582.2664388120363 61.92 0.28699 61.433 61.243 61.529 -0.48764 22 13 2 0 0 0 0.41742 1 33714 33714 11.64 2.2572 1 1715700 + 14863 21040;24659 10113 10314 17877 17877 -0.05563477395071459 FVMPCYEKF 9 Unmodified _FVMPCYEKF_ 0 0 0 REV__nc|ENSG00000276293|P78356-2|PIP4K2B;REV__nc|ENSG00000150867|P48426-2|PIP4K2A REV__nc|ENSG00000150867|P48426-2|PIP4K2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.266838 1162.51912 0.28513 0.00016602 -1.9987 -0.0011638 -1.7136 -0.00099774 582.2667711006247 61.276 0.15456 61.276 61.235 61.389 0 -0.078301 -0.0011466 NaN 11.64 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 290920 + 14864 21040;24659 10113 10314 -0.05563477395071459 FVNCVERF 8 Unmodified _FVNCVERF_ 0 0 0 ENSG00000126953|ENST00000372902|TIMM8A ENSG00000126953|ENST00000372902|TIMM8A ENSG00000126953|ENST00000372902|TIMM8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2468872070312 2 507.247295 1012.48004 0.27713 0.00014057 -0.2201 -0.00011165 0.057026 2.8926E-05 507.2472787456678 77.234 0.42916 77.284 77.057 77.486 0.05011 55 17 4 0 0 0 0.75262 1 42668 42668 12.532 3.1841 1 14614000 14865 3983 10114 10315 17878 17878 -0.025704416344069614 FVNDDRHVM 9 Oxidation (M) _FVNDDRHVM(Oxidation (M))_ FVNDDRHVM(1) FVNDDRHVM(62) 0 0 1 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7623901367188 2 574.761297 1147.50804 0.6093 0.0003502 1.0977 0.00063091 1.707 0.00098111 574.7619739221783 17.842 0.29526 15.255 15.144 15.439 -2.5866 57 25 3 0 0 0 0.021948 2 9418 9313;9418 61.602 61.602 1 6198400 14866 4131 10115 10316 17879;17880 17880 735 -0.059811634449943085 FVNDDRHVM 9 Unmodified _FVNDDRHVM_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.1782531738281 3 378.178319 1131.51313 0.97107 0.00036724 -0.64286 -0.00024312 0.32821 0.00012412 378.17814916026134 27.275 0.40999 24.239 23.985 24.395 -3.0365 54 20 4 0 0 0 0.060956 2 15029 15029;15148 42.312 42.312 1 78045000 14867 4131 10115 10317 17881;17882 17881 -0.0473685958236274 FVNDDRHVM 9 Unmodified _FVNDDRHVM_ 0 0 0 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MSMS AL20221201_MKP_PDAC_01 4 566.7633666992188 2 566.76384 1131.51313 NaN NaN NaN NaN NaN NaN NaN 27.221 1 24.184 23.684 24.684 -3.0365 0 0 0 0.022519 1 15068 15068 114.65 68.949 1 14868 4131 10115 10317 17883 17883 -0.0473685958236274 FVNPHVSSF 9 Unmodified _FVNPHVSSF_ 0 0 0 nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000602029.1_1_19:50519188-50519419:-|nuORF;ENST00000599138.5_1_19:50512054-50519419:-|nuORF;ENST00000424804.6_1_19:50496160-50519419:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2573852539062 2 517.258717 1032.50288 NaN NaN NaN NaN NaN NaN NaN 44.815 1 44.499 43.999 44.999 -0.31585 0 0 0 0.044471 1 23919 23919 60.074 25.887 1 14869 2272 10116 10318 17884 17884 -0.012070992452891005 FVNPHVSSF 9 Unmodified _FVNPHVSSF_ 0 0 0 nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000602029.1_1_19:50519188-50519419:-|nuORF;ENST00000599138.5_1_19:50512054-50519419:-|nuORF;ENST00000424804.6_1_19:50496160-50519419:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.25927734375 2 517.258717 1032.50288 0.055594 2.8757E-05 -0.41527 -0.0002148 -0.35967 -0.00018604 517.2585911576243 44.486 0.16087 44.464 44.346 44.506 -0.022064 13 7 2 0 0 0 0.011968 1 23864 23864 74.929 36.778 1 6271100 14870 2272 10116 10318 17885 17885 -0.012070992452891005 FVNSDFAFDF 10 Unmodified _FVNSDFAFDF_ 0 0 0 ENSG00000145626|ENST00000274278|UGT3A1;nc|ENSG00000145626|Q6NUS8-2|UGT3A1 ENSG00000145626|ENST00000274278|UGT3A1 ENSG00000145626|ENST00000274278|UGT3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7680053710938 2 604.766571 1207.51859 0.14778 8.9371E-05 1.0177 0.00061547 1.1655 0.00070484 604.7673061857379 57.607 0.57389 57.607 57.371 57.944 0 121 26 6 0 0 0 0.38026 2 32001 32001;32217 32.786 15.843 1 883320000 14871 5708 10117 10319 17886;17887 17886 -0.07686857518910983 FVNSIQTAF 9 Unmodified _FVNSIQTAF_ 0 0 0 nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000459930.1_1_2:183594580-183597320:+|nuORF;nc|ENSG00000077232|Q8IXB1-3|DNAJC10 nc|ENSG00000077232|Q8IXB1-2|DNAJC10 nc|ENSG00000077232|Q8IXB1-2|DNAJC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7662353515625 2 513.766374 1025.5182 0.96799 0.00049732 0.14694 7.5495E-05 1.1149 0.00057281 513.7663972729212 63.624 0.3125 63.613 63.49 63.803 -0.010529 26 14 2 0 0 0 0.024882 1 34824 34824 58.679 33.28 1 5105800 14872 1208 10118 10320 17888 17888 0.0064576755189591495 FVNSYLSLF 9 Unmodified _FVNSYLSLF_ 0 0 0 ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8 ENSG00000074855|ENST00000159087|ANO8 ENSG00000074855|ENST00000159087|ANO8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7584228515625 2 545.2844 1088.55425 0.080208 4.3736E-05 2.5029 0.0013648 2.5831 0.0014085 545.2860785562924 58.881 0.12534 58.39 58.348 58.474 -0.49079 8 5 2 0 0 0 0.19891 1 32025 32025 11.64 2.2929 1 493240 14873 1137 10119 10321 17889 17889 0.013512247287508217 FVPCELCF 8 Unmodified _FVPCELCF_ 0 0 0 REV__ENST00000341329.7_1_2:227860472-227860832:+|nuORF REV__ENST00000341329.7_1_2:227860472-227860832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4295654296875 1 957.420873 956.413596 0.013311 1.2744E-05 2.119 0.0020288 2.1324 0.0020416 957.4231841545072 59.159 0.2335 59.159 58.984 59.217 0 14 9 2 0 0 0 0.77907 1 32929 32929 10.183 0 1 872610 + 14874 25705 10120 10322 17890 17890 -0.06635393520684829 FVPGPEDPGFG 11 Unmodified _FVPGPEDPGFG_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000554377.1_1_14:50116973-50120958:-|nuORF;ENST00000553850.1_1_14:50120706-50120958:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7609252929688 2 559.761289 1117.50803 NaN NaN NaN NaN NaN NaN NaN 62.444 1 61.956 61.456 62.456 -0.48764 0 0 0 0.47782 1 34024 34024 25.399 0.72543 1 14875 1833 10121 10323 17891 17891 -0.04602840173333789 FVPHLHLLY 9 Unmodified _FVPHLHLLY_ 0 0 0 ENST00000578529.5_1_18:259269-260310:-|nuORF;ENST00000581116.1_1_18:259269-264031:-|nuORF ENST00000578529.5_1_18:259269-260310:-|nuORF ENST00000578529.5_1_18:259269-260310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8278198242188 2 569.824027 1137.6335 -0.04299 -2.4497E-05 2.8187 0.0016061 2.7757 0.0015817 569.8253660549259 37.234 0.29289 36.962 36.821 37.114 -0.27133 18 11 2 0 0 0 0.52844 1 19565 19565 5.2307 0.47466 1 1625600 14876 15543 10122 10324 17892 17892 0.07018916473566605 FVPKIIAY 8 Unmodified _FVPKIIAY_ 0 0 0 REV__ENST00000537585.1_1_12:64505608-64509723:+|nuORF REV__ENST00000537585.1_1_12:64505608-64509723:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 476.251708984375 2 475.789121 949.56369 1.2056 0.00057362 -0.15133 -7.1999E-05 1.0543 0.00050162 475.7890763585812 37.082 0.32358 32.798 32.632 32.955 -4.2835 32 19 2 0 0 0 8.7369 1 21804 21804 2.5775 2.5775 1 14251000 + 14877 28549 10123 10325 17893 17893 0.08689037804947475 FVPNLQKPI 9 Unmodified _FVPNLQKPI_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MSMS AL20221201_MKP_PDAC_01 4 352.548583984375 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 37.758 1 33.389 32.889 33.889 -4.3689 0 0 0 0.70001 1 22193 22193 9.3831 0 1 + 14878 24323 10124 10326 17894 17894 0.09239210236660256 FVPRVPLHV 9 Unmodified _FVPRVPLHV_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF;MRPL38|p.A165T|1|0.19|ENSG00000204316|chr17:75901810-75901810|C/T|missense_variant ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.32421875 2 532.324194 1062.63383 0.62559 0.00033302 -0.20077 -0.00010687 0.42482 0.00022614 532.3238417521993 49.383 0.22096 49.339 49.215 49.436 -0.04369 16 10 2 0 0 0 0.5029 1 26681 26681 7.2892 1.0834 1 1727500 14879 10268 10125 10327 17895 17895 0.10502336193394513 FVPSPPSV 8 Unmodified _FVPSPPSV_ 0 0 0 REV__ENST00000542274.5_1_16:68679206-68732300:+|nuORF REV__ENST00000542274.5_1_16:68679206-68732300:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 829.4456176757812 1 829.445431 828.438155 -0.068299 -5.665E-05 -0.29751 -0.00024677 -0.36581 -0.00030342 829.4451539090117 64.752 0.78387 64.752 64.386 65.169 0 64 37 2 0 0 0 0.5284 1 36077 36077 32.117 3.9437 1 1969800 + 14880 28612 10126 10328 17896 17896 0.017073259487233372 FVPSPPSV 8 Unmodified _FVPSPPSV_ 0 0 0 REV__ENST00000542274.5_1_16:68679206-68732300:+|nuORF REV__ENST00000542274.5_1_16:68679206-68732300:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.447509765625 1 829.445431 828.438155 -0.23203 -0.00019245 0.48629 0.00040335 0.25427 0.0002109 829.4458560798013 65.312 0.77406 64.828 64.448 65.222 -0.48428 64 35 2 0 0 0 0.5284 1 35713 35713 32.117 5.7757 1 3078300 + 14881 28612 10126 10328 17897 17897 0.017073259487233372 FVQESVFV 8 Unmodified _FVQESVFV_ 0 0 0 ENST00000409923.5_1_7:23004115-23015865:-|nuORF ENST00000409923.5_1_7:23004115-23015865:-|nuORF ENST00000409923.5_1_7:23004115-23015865:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.0678100585938 1 954.49311 953.485833 0.88279 0.00084261 0.88297 0.00084279 1.7658 0.0016854 954.4940427749192 79.955 0.26351 79.465 79.296 79.56 -0.48932 18 10 2 0 0 0 0.79783 1 43717 43717 7.9102 0 1 2085500 14882 12971 10127 10329 17898 17898 0.007229801489188503 FVQGTDEPHF 10 Unmodified _FVQGTDEPHF_ 0 0 0 REV__ENST00000596333.1_1_19:51358187-51361618:+|nuORF REV__ENST00000596333.1_1_19:51358187-51361618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8484191894531 3 392.848856 1175.52474 -0.054419 -2.1378E-05 0.26378 0.00010363 0.20936 8.2248E-05 392.84889948999995 31.554 0.42235 31.554 31.398 31.82 0 56 20 4 0 0 0 0.68719 1 16511 16511 2.086 0.89267 1 20094000 + 14883 20576 10128 10330 17899 17899 -0.056003392873890334 FVQRCYLF 8 Unmodified _FVQRCYLF_ 0 0 0 REV__ENST00000535229.1_1_6:166195147-166399619:-|nuORF REV__ENST00000535229.1_1_6:166195147-166399619:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7959594726562 2 538.273312 1074.53207 0.24833 0.00013367 1.942 0.0010453 2.1903 0.001179 538.7757195675148 52.83 0.21605 52.378 52.299 52.515 -0.45173 20 10 2 0 0 0 8.7369 1 28624 28624 11.114 7.1701 1 1351000 + 14884 28522 10129 10331 17900 17900 -0.0022127822066977387 FVQSSPSIF 9 Unmodified _FVQSSPSIF_ 0 0 0 REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2617492675781 2 506.260925 1010.5073 0.59262 0.00030002 -0.29386 -0.00014877 0.29877 0.00015125 506.2606629747373 56.635 0.32627 50.658 50.485 50.811 -5.9769 25 18 2 0 0 0 0.06294 1 36125 36125 41.84 3.8656 1 16443000 + 14885 24067 10130 10332 17901 17901 0.0024636517762246513 FVRAGAGK 8 Unmodified _FVRAGAGK_ 0 0 0 REV__ENSG00000004864|ENST00000265631|SLC25A13 REV__ENSG00000004864|ENST00000265631|SLC25A13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2365417480469 2 403.237587 804.460622 NaN NaN NaN NaN NaN NaN NaN 0.025668 1 -0.048252 -0.54825 0.45175 -0.07392 0 0 0 0.97444 1 12 12 0.69038 0.69038 1 + 14886 16955 10131 10333 17902 17902 0.05056970137002281 FVREGGQH 8 Unmodified _FVREGGQH_ 0 0 0 REV__nc|ENSG00000249948|Q9H227|GBA3 REV__nc|ENSG00000249948|Q9H227|GBA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.233154296875 2 465.233033 928.451513 0.072653 3.38E-05 0.058143 2.705E-05 0.1308 6.085E-05 465.2330548193615 16.571 0.17469 16.576 16.473 16.648 0.0050545 24 8 4 0 0 0 0.75262 1 8301 8301 12.532 0.89125 1 7580400 + 14887 29975 10132 10334 17903 17903 -0.01557423219321663 FVRICEEC 8 Unmodified _FVRICEEC_ 0 0 0 REV__ENST00000609841.1_1_10:42831530-42831992:-|nuORF REV__ENST00000609841.1_1_10:42831530-42831992:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7237854003906 2 499.725338 997.436123 NaN NaN NaN NaN NaN NaN NaN 6.0958 1 6.0183 5.5183 6.5183 -0.07749 0 0 0 0.97444 1 3009 3009 0.69038 0.69038 1 + 14888 29334 10133 10335 17904 17904 -0.06269794123045358 FVRKAVRAI 9 Unmodified _FVRKAVRAI_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8985290527344 3 353.897704 1058.67128 1.8397 0.00065106 -0.030078 -1.0644E-05 1.8096 0.00064042 353.8977635316017 21.711 0.313 18.976 18.827 19.14 -2.7348 36 16 3 0 0 0 0.047196 1 11644 11644 34.932 9.9411 1 3241500 14889 1783;329 10134 10336 17905 17905 0.14429427459026556 FVRWWQWHRLK 11 Unmodified _FVRWWQWHRLK_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.4500122070312 2 821.449311 1640.88407 NaN NaN NaN NaN NaN NaN NaN 103.15 1 103.11 102.61 103.61 -0.047928 0 0 0 0.9435 1 57287 57287 0 0 1 + 14890 19898 10135 10337 17906 17906 0.0892631351887303 FVRWYSPRDYI 11 Unmodified _FVRWYSPRDYI_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2738952636719 3 501.257738 1500.75138 1.1998 0.00060139 0.94693 0.00047466 2.1467 0.001076 501.59272504004997 71.06 0.24935 71.096 70.979 71.228 0.035515 25 10 3 0 0 0 0.3058 1 39056 39056 1.4551 0.12547 1 1625200 14891 3167 10136 10338 17907 17907 0.02103824271580379 FVSAGIQTSF 10 Unmodified _FVSAGIQTSF_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7722778320312 2 528.771657 1055.52876 0.99526 0.00052626 -1.6645 -0.00088015 -0.66926 -0.00035388 528.7712954915191 69.144 0.39087 62.968 62.762 63.153 -6.1757 30 21 2 0 0 0 0.20962 1 45154 45154 32.786 16.939 1 21543000 14892 2594 10137 10339 17908 17908 0.00321750206330762 FVSEAFGFAAF 11 Unmodified _FVSEAFGFAAF_ 0 0 0 REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7869873046875 2 596.787307 1191.56006 0.039041 2.3299E-05 1.257 0.00075014 1.296 0.00077344 596.7882112324662 79.717 0.29951 79.772 79.577 79.876 0.054977 18 11 2 0 0 0 0.54936 1 44081 44081 13.906 0 1 1456000 + 14893 22509 10138 10340 17909 17909 -0.028056767595899146 FVSENVTQY 9 Unmodified _FVSENVTQY_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.K354Tfs*13|1|0.23|ENSG00000140396|chr8:70159565-70159568|AGTT/-|frameshift_variant;NCOA2|p.L147P|1|0.14|ENSG00000140396|chr8:70170303-70170303|A/G|missense_variant;ENST00000497292.1_1_20:46255748-46257319:+|nuORF;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 ENSG00000140396|ENST00000452400|NCOA2;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.759765625 2 543.758746 1085.50294 0.5587 0.0003038 0.28969 0.00015752 0.84838 0.00046132 543.7588625094568 42.404 0.30511 42.404 42.238 42.544 0 34 14 3 0 0 0 0.095405 1 22925 22925 34.102 20.196 1 5867400 14894 5230;3749 10139 10341 17910 17910 -0.03639144035946629 FVSGVKIFY 9 Unmodified _FVSGVKIFY_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000198874|Q9NV66-2|TYW1 ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.296875 2 530.29731 1058.58007 0.60768 0.00032225 1.0066 0.00053381 1.6143 0.00085606 530.2971932544457 64.885 0.51946 64.885 64.578 65.097 7.6294E-06 75 25 5 0 0 0 0.032796 1 35520 35520 53.833 26.204 1 12520000 14895 10181 10140 10342 17911 17911 0.053121189710282124 FVSGVKIFY 9 Unmodified _FVSGVKIFY_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000198874|Q9NV66-2|TYW1 ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MSMS AL20221201_MKP_PDAC_01 4 530.297607421875 2 530.29731 1058.58007 NaN NaN NaN NaN NaN NaN NaN 75.046 1 68.87 68.37 69.37 -6.1757 0 0 0 0.33856 1 49071 49071 23.148 7.3802 1 14896 10181 10140 10342 17912 17912 0.053121189710282124 FVSSCTESF 9 Unmodified _FVSSCTESF_ 0 0 0 REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1 REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7132263183594 2 503.71295 1005.41135 0.43001 0.0002166 -0.64933 -0.00032707 -0.21932 -0.00011047 503.7126940605633 64.584 0.26723 64.584 64.427 64.694 0 22 13 2 0 0 0 0.2143 1 36022 36022 21.747 0 1 989890 + 14897 21017 10141 10343 17913 17913 -0.09114150724781211 FVSTDIINT 9 Unmodified _FVSTDIINT_ 0 0 0 ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 ENSG00000082438|ENST00000652658|COBLL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2642211914062 2 505.263665 1008.51278 NaN NaN NaN NaN NaN NaN NaN 31.249 1 31.146 30.646 31.646 -0.10269 0 0 0 0.84564 1 16238 16238 2.0598 0 1 14898 1345 10142 10344 17914 17914 0.008860439694558409 FVSTPTLVY 9 Unmodified _FVSTPTLVY_ 0 0 0 ENSG00000187513|ENST00000342280|GJA4 ENSG00000187513|ENST00000342280|GJA4 ENSG00000187513|ENST00000342280|GJA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7797241210938 2 513.778951 1025.54335 0.68254 0.00035068 0.85638 0.00043999 1.5389 0.00079067 513.7793863181522 76.117 0.366 69.941 69.675 70.041 -6.1757 32 19 2 0 0 0 0.06187 1 49747 49747 42.095 6.0504 1 15478000 14899 9556 10143 10345 17915 17915 0.03159822354473363 FVSYMEEEQ 9 Unmodified _FVSYMEEEQ_ 0 0 0 nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;ENST00000504117.1_1_5:93752768-93812878:-|nuORF nc|ENSG00000185261|Q8IV33-3|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.244873046875 2 581.242072 1160.46959 0.93954 0.0005461 2.2171 0.0012887 3.1566 0.0018348 581.243409705762 48.639 0.35732 43.243 42.98 43.337 -5.3961 29 21 2 0 0 0 0.51218 1 30198 30198 6.7232 1.4925 1 17213000 14900 9353 10144 10346 17916 17916 -0.1042251387016222 FVTLAINNCFL 11 Unmodified _FVTLAINNCFL_ 0 0 0 nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P nc|ENSG00000158731|Q8NGY7|OR10J6P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8342895507812 2 627.831191 1253.64783 4.0468 0.0025407 0.94553 0.00059363 4.9923 0.0031343 627.8316099387655 99.345 0.08638 99.317 99.274 99.36 -0.028282 4 2 2 0 0 0 0.67371 1 55199 55199 6.7232 0 1 2711300 14901 16305 10145 10347 17917 17917 0.03115200839533827 FVTQSQLFPSL 11 Unmodified _FVTQSQLFPSL_ 0 0 0 ENST00000327827.11_1_16:9212813-9213104:+|nuORF ENST00000327827.11_1_16:9212813-9213104:+|nuORF ENST00000327827.11_1_16:9212813-9213104:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.837890625 2 633.840071 1265.66559 NaN NaN NaN NaN NaN NaN NaN 53.385 1 47.581 47.081 48.081 -5.8042 0 0 0 0.18502 1 33733 33733 40.239 12.61 1 14902 11830 10146 10348 17918 17918 0.04338239366052221 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2313842773438 2 430.231636 858.448719 0.14706 6.3271E-05 -0.84887 -0.00036521 -0.70181 -0.00030194 430.23119154570725 77.516 0.35042 77.516 77.362 77.712 0 54 29 2 0 0 0 0.37649 1 43073 43073 46.921 6.4723 1 4715900 + 14903 16944 10147 10349 17919 17919 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.455078125 1 859.455996 858.448719 0.086622 7.4448E-05 -0.71318 -0.00061295 -0.62656 -0.0005385 859.4552412977363 77.49 0.50609 77.49 77.265 77.771 0 111 36 4 0 0 0 0.13832 2 43100 43100;43197 89.427 21.474 1 37147000 + 14904 16944 10147 10349 17920;17921 17920 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.2309875488281 2 430.231636 858.448719 -0.83828 -0.00036066 -0.08865 -3.814E-05 -0.92693 -0.0003988 430.2315343520518 77.951 0.43958 77.469 77.269 77.709 -0.4826 63 33 2 0 0 0 0.44122 2 42767 42655;42767 40.449 12.275 1 8975400 + 14905 16944 10147 10349 17922;17923 17923 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4558715820312 1 859.455996 858.448719 -1.3785 -0.0011848 0.56048 0.00048171 -0.81801 -0.00070304 859.4563315780127 77.97 0.56645 77.488 77.215 77.782 -0.4826 108 38 3 0 0 0 0.094359 2 42792 42692;42792 101.72 27.326 1 67999000 + 14906 16944 10147 10349 17924;17925 17925 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.842041015625 2 430.231636 858.448719 -0.83828 -0.00036066 -0.08865 -3.814E-05 -0.92693 -0.0003988 430.2315343520518 77.951 0.43958 77.469 77.269 77.709 -0.4826 63 33 2 0 0 0 8.7369 1 42638 42638 32.117 0 1 8975400 + 14907 16944 10147 10349 17926 17926 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 859.4560546875 1 859.455996 858.448719 0.37192 0.00031965 0.27672 0.00023783 0.64865 0.00055748 859.4561538787806 77.456 0.32927 77.506 77.346 77.675 0.05011 24 13 2 0 0 0 0.17035 2 42709 42709;42815 81.864 16.642 1 4709600 + 14908 16944 10147 10349 17927;17928 17927 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.4563598632812 1 859.455996 858.448719 -0.074723 -6.4221E-05 0.5318 0.00045706 0.45708 0.00039284 859.4563607407331 85.213 0.76038 79.038 78.735 79.495 -6.1757 147 46 4 0 0 0 0.078065 4 55935 55935;56058;56185;56311 114.94 28.822 1 323110000 + 14909 16944 10147 10349 17929;17930;17931;17932 17929 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 859.455996 858.448719 0.086622 7.4448E-05 -0.71318 -0.00061295 -0.62656 -0.0005385 859.4552412977363 77.49 0.50609 77.49 77.265 77.771 0 -0.0046741 -0.00061517 NaN 101.72 111 36 4 NaN NaN NaN NaN 0 NaN NaN 0 37147000 + 14910 16944 10147 10349 0.013833086031354469 FVTVPEAP 8 Unmodified _FVTVPEAP_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 430.231636 858.448719 0.14706 6.3271E-05 -0.84887 -0.00036521 -0.70181 -0.00030194 430.23119154570725 77.516 0.35042 77.516 77.362 77.712 0 0.023567 -0.00032603 NaN 46.921 54 29 2 NaN NaN NaN NaN 0 NaN NaN 0 4715900 + 14911 16944 10147 10349 0.013833086031354469 FVTVSQPGL 9 Unmodified _FVTVSQPGL_ 0 0 0 nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2639465332031 2 474.263468 946.512382 0.53991 0.00025606 -0.084628 -4.0136E-05 0.45528 0.00021592 474.26345603033855 52.685 0.31642 52.248 52.097 52.414 -0.43736 37 15 3 0 0 0 0.10734 1 28544 28544 32.305 6.9062 1 9000200 14912 8991 10148 10350 17933 17933 0.03698669040238656 FVTVVKSA 8 Unmodified _FVTVVKSA_ 0 0 0 REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.7556762695312 2 425.755278 849.496004 0.41922 0.00017849 0.76188 0.00032438 1.1811 0.00050286 425.7555138036245 23.924 0.28264 21.096 20.983 21.265 -2.8273 20 16 2 0 0 0 0.71527 1 12977 12977 15.847 3.3156 1 3056300 + 14913 17490 10149 10351 17934 17934 0.06523587874141867 FVVCWKGRSKF 11 Unmodified _FVVCWKGRSKF_ 0 0 0 REV__nc|ENSG00000095485|Q69YN2-2|CWF19L1 REV__nc|ENSG00000095485|Q69YN2-2|CWF19L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2468872070312 3 452.913025 1355.71725 0.31178 0.00014121 1.9256 0.00087214 2.2374 0.0010133 452.9139025294133 23.767 0.28212 20.939 20.791 21.073 -2.8273 30 17 2 0 0 0 0.65846 1 12940 12940 4.1166 0 1 5867500 + 14914 17943 10150 10352 17935 17935 0.05361704578945137 FVVDLNTF 8 Unmodified _FVVDLNTF_ 0 0 0 REV__ENSG00000146281|ENST00000275072|PM20D2 REV__ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4943237304688 1 954.49311 953.485833 -0.16952 -0.00016181 1.0175 0.00097117 0.84795 0.00080936 954.4941778165206 72.319 0.24127 72.319 72.219 72.461 0 12 9 2 0 0 0 0.77907 1 40290 40290 10.183 0 1 354750 + 14915 20825 10151 10353 17936 17936 0.007229801489188503 FVVDLNTF 8 Unmodified _FVVDLNTF_ 0 0 0 REV__ENSG00000146281|ENST00000275072|PM20D2 REV__ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7511596679688 2 477.750193 953.485833 0.76147 0.00036379 0.10934 5.2235E-05 0.87081 0.00041603 477.7503595572905 72.779 0.35115 72.303 72.146 72.497 -0.47588 42 15 3 0 0 0 0.71616 1 39793 39793 15.768 1.1865 1 2932100 + 14916 20825 10151 10353 17937 17937 0.007229801489188503 FVVDLNTF 8 Unmodified _FVVDLNTF_ 0 0 0 REV__ENSG00000146281|ENST00000275072|PM20D2 REV__ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.4945068359375 1 954.49311 953.485833 0.56244 0.00053685 0.47718 0.00045546 1.0396 0.00099231 954.4935594987588 72.785 0.32954 72.309 72.167 72.497 -0.47588 32 14 3 0 0 0 0.77907 1 39892 39892 10.183 0 1 2398300 + 14917 20825 10151 10353 17938 17938 0.007229801489188503 FVVEHDFIM 9 Oxidation (M) _FVVEHDFIM(Oxidation (M))_ FVVEHDFIM(1) FVVEHDFIM(68) 0 0 1 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7709350585938 2 576.773342 1151.53213 1.0502 0.00060571 -2.0765 -0.0011977 -1.0263 -0.00059195 576.7717335230287 54.45 0.24368 54.45 54.309 54.553 0 27 10 3 0 0 0 0.015445 1 30200 30200 68.081 46.491 1 5560600 14918 7151 10152 10354 17939 17939 1236 -0.03757323011313929 FVVEHDFIM 9 Unmodified _FVVEHDFIM_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044588-146044753:+|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7774658203125 2 568.775885 1135.53722 0.75889 0.00043164 1.4341 0.0008157 2.193 0.0012473 568.7771476565454 67.744 0.2459 67.262 67.165 67.411 -0.48218 25 10 3 0 0 0 0.40476 1 37005 37005 18.135 10.225 1 967700 14919 7151 10152 10355 17940 17940 -0.02513019148705098 FVVEQVESY 9 Unmodified _FVVEQVESY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.268310546875 2 550.268947 1098.52334 0.57515 0.00031649 -1.5568 -0.00085665 -0.98163 -0.00054016 550.2679076342871 54.885 0.52898 54.885 54.689 55.218 0 63 22 4 0 0 0 0.10734 1 30437 30437 32.305 0 1 46896000 14920 4267 10153 10356 17941 17941 -0.021979733761327225 FVVEQVESY 9 Unmodified _FVVEQVESY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2670288085938 2 550.268947 1098.52334 0.43633 0.0002401 -1.1519 -0.00063385 -0.71556 -0.00039375 550.2679776603939 55.557 0.43311 55.079 54.926 55.36 -0.47798 42 20 3 0 0 0 0.042911 1 30122 30122 48.346 22.947 1 5568700 14921 4267 10153 10356 17942 17942 -0.021979733761327225 FVVEQVESY 9 Unmodified _FVVEQVESY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7944946289062 2 550.268947 1098.52334 0.14962 8.2333E-05 -0.36299 -0.00019974 -0.21336 -0.00011741 550.268795738882 55.257 0.24068 55.188 55.038 55.278 -0.068737 20 11 2 0 0 0 0.19891 1 30030 30030 11.64 2.2929 1 1331000 14922 4267 10153 10356 17943 17943 -0.021979733761327225 FVVEQVESY 9 Unmodified _FVVEQVESY_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.26953125 2 550.268947 1098.52334 0.77297 0.00042534 -0.66551 -0.00036621 0.10746 5.9134E-05 550.2687188252157 63.338 0.51451 57.162 56.877 57.391 -6.1757 68 29 3 0 0 0 0.10734 2 40877 40877;41021 32.305 13.049 1 99229000 14923 4267 10153 10356 17944;17945 17944 -0.021979733761327225 FVVEVNTTF 9 Unmodified _FVVEVNTTF_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.3123779296875 2 528.274032 1054.53351 1.1947 0.00063111 0.52458 0.00027712 1.7192 0.00090823 528.2742711236732 81.468 0.36826 75.292 75.182 75.55 -6.1757 34 20 2 0 0 0 0.10661 1 53572 53572 30.637 13.694 1 14720000 14924 9830 10154 10357 17946 17946 0.008426343491009902 FVVNKPWLF 9 Unmodified _FVVNKPWLF_ 0 0 0 nc|ENSG00000130055|Q9HCC8-3|GDPD2;ENSG00000130055|ENST00000374382|GDPD2;nc|ENSG00000130055|Q9HCC8-2|GDPD2 nc|ENSG00000130055|Q9HCC8-3|GDPD2 nc|ENSG00000130055|Q9HCC8-3|GDPD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.5307006835938 3 383.886694 1148.63825 1.538 0.00059043 1.8801 0.00072176 3.4182 0.0013122 384.22161143827657 32.353 0.098217 28.496 28.418 28.516 -3.8562 7 5 2 0 0 0 0.21404 1 18414 18414 5.2969 1.1074 1 3254600 14925 4177 10155 10358 17947 17947 0.06987800616320783 FVVYYIAGF 9 Unmodified _FVVYYIAGF_ 0 0 0 REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1 REV__nc|ENSG00000170113|Q7RTP0-2|NIPA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.257080078125 2 539.784036 1077.55352 0.37166 0.00020062 4.421 0.0023864 4.7927 0.002587 539.786831087343 83.194 0.23047 82.697 82.583 82.814 -0.49751 19 8 3 0 0 0 0.21242 1 45527 45527 5.2307 0.90143 1 988800 + 14926 22447 10156 10359 17948 17948 0.017844300797150936 FVWLHYYSVRD 11 Unmodified _FVWLHYYSVRD_ 0 0 0 ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT ENST00000472871.1_1_13:95120883-95131509:-|nuORF ENST00000472871.1_1_13:95120883-95131509:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.9170227050781 3 495.582221 1483.72483 -0.21994 -0.000109 0.94282 0.00046725 0.72288 0.00035825 495.5825449399058 29.391 0.16238 29.391 29.308 29.47 0 12 7 2 0 0 0 0.74046 1 15237 15237 0.45452 0.046251 1 754370 14927 1292 10157 10360 17949 17949 0.0023213538020172564 FVWLHYYSVRD 11 Unmodified _FVWLHYYSVRD_ 0 0 0 ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT ENST00000472871.1_1_13:95120883-95131509:-|nuORF ENST00000472871.1_1_13:95120883-95131509:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.5830383300781 3 495.582221 1483.72483 -0.44674 -0.00022139 0.47551 0.00023565 0.028771 1.4259E-05 495.5823989396925 19.045 0.11462 19.068 18.992 19.106 0.023106 11 6 2 0 0 0 0.72981 1 9589 9589 1.4551 0.94916 1 410920 14928 1292 10157 10360 17950 17950 0.0023213538020172564 FVYDEPGHAV 10 Unmodified _FVYDEPGHAV_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.267333984375 2 567.266739 1132.51892 0.58292 0.00033067 0.69497 0.00039424 1.2779 0.00072491 567.2671582641206 38.49 0.24023 38.49 38.379 38.62 0 34 13 3 0 0 0 0.095786 1 20554 20554 57.471 32.797 1 10094000 14929 5021 10158 10361 17951 17951 -0.042034377990376015 FVYDEPGHAVM 11 Oxidation (M) _FVYDEPGHAVM(Oxidation (M))_ FVYDEPGHAVM(1) FVYDEPGHAVM(44) 0 0 1 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.784423828125 2 640.784438 1279.55432 0.19448 0.00012462 -0.0042074 -2.696E-06 0.19028 0.00012193 640.7846949006471 36.149 0.19751 36.149 36.032 36.229 0 16 9 2 0 0 0 0.088077 1 19161 19161 43.858 33.784 1 4180700 14930 5021 10159 10362 17952 17952 917 -0.07427143333552522 FWAEEDGPF 9 Unmodified _FWAEEDGPF_ 0 0 0 ENSG00000168159|ENST00000305943|RNF187 ENSG00000168159|ENST00000305943|RNF187 ENSG00000168159|ENST00000305943|RNF187 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.232177734375 2 549.232364 1096.45018 0.3285 0.00018042 -1.3128 -0.00072106 -0.98435 -0.00054064 549.7325925591524 63.042 0.53566 63.042 62.611 63.146 0 38 22 3 0 0 0 0.2143 1 35125 35125 21.747 7.165 1 2887700 14931 7725 10160 10363 17953 17953 -0.09419102098763688 FWAPVCAFL 9 Unmodified _FWAPVCAFL_ 0 0 0 ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2630004882812 2 527.264956 1052.51536 0.42744 0.00022538 -3.3483 -0.0017655 -2.9209 -0.0015401 527.2635088300707 79.331 0.21667 79.331 79.229 79.446 0 15 8 2 0 0 0 0.53666 1 44059 44059 5.2307 0.47466 1 655150 14932 9338 10161 10364 17954 17954 -0.008797791066172067 FWARYHQYI 9 Unmodified _FWARYHQYI_ 0 0 0 nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENST00000481096.6_1_X:51805328-51806235:-|nuORF;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENST00000490581.6_1_X:51805127-51807590:-|nuORF nc|ENSG00000187243|Q96JG8-2|MAGED4;ENST00000490581.6_1_X:51805127-51807590:-|nuORF nc|ENSG00000187243|Q96JG8-2|MAGED4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.3199462890625 2 642.31964 1282.62473 NaN NaN NaN NaN NaN NaN NaN 86.224 1 86.224 85.724 86.724 0 0 0 0 0.85737 1 47765 47765 0.6015 0 1 14933 6333;14262 10162 10365 17955 17955 -0.00528057162910045 FWCFYLNK 8 Unmodified _FWCFYLNK_ 0 0 0 ENST00000478190.3_2_2:148782796-148782865:+|nuORF ENST00000478190.3_2_2:148782796-148782865:+|nuORF ENST00000478190.3_2_2:148782796-148782865:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1812438964844 3 374.181001 1119.52117 NaN NaN NaN NaN NaN NaN NaN 14.87 1 14.876 14.376 15.376 0.0057774 0 0 0 0.97444 1 7390 7390 0.40072 0 1 14934 14010 10163 10366 17956 17956 -0.033806805949552654 FWDCSVCTF 9 2 Carbamidomethyl (C) _FWDC(Carbamidomethyl (C))SVC(Carbamidomethyl (C))TF_ FWDC(1)SVC(1)TF FWDC(67)SVC(67)TF 0 2 0 ENSG00000163602|ENST00000477973|RYBP;nc|ENSG00000163602|Q8N488|RYBP ENSG00000163602|ENST00000477973|RYBP ENSG00000163602|ENST00000477973|RYBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.24169921875 2 611.238809 1220.46307 1.1852 0.00072444 -0.040174 -2.4556E-05 1.145 0.00069988 611.2389485043643 79.189 0.41486 73.013 72.787 73.202 -6.1757 39 22 2 0 0 0 0.016184 2 51802 51802;51935 67.344 29.37 1 17200000 14935 7025 10164 10367 17957;17958 17957 688;689 -0.13834730302528442 FWDGKIVLV 9 Unmodified _FWDGKIVLV_ 0 0 0 ENSG00000171320|ENST00000305188|ESCO2;nc|ENSG00000171320|Q56NI9-2|ESCO2 ENSG00000171320|ENST00000305188|ESCO2 ENSG00000171320|ENST00000305188|ESCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8109741210938 2 538.810585 1075.60662 0.11216 6.0435E-05 -2.5396 -0.0013684 -2.4274 -0.0013079 538.8110168096505 77.143 0.38507 77.193 77.01 77.395 0.05011 61 15 5 0 0 0 0.085319 1 42640 42640 36.506 20.357 1 20362000 14936 8092 10165 10368 17959 17959 0.07183807862361391 FWDGKIVLV 9 Unmodified _FWDGKIVLV_ 0 0 0 ENSG00000171320|ENST00000305188|ESCO2;nc|ENSG00000171320|Q56NI9-2|ESCO2 ENSG00000171320|ENST00000305188|ESCO2 ENSG00000171320|ENST00000305188|ESCO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8112182617188 2 538.810585 1075.60662 0.91198 0.00049139 0.79664 0.00042924 1.7086 0.00092062 538.809754523285 94.967 1.2655 88.791 87.806 89.071 -6.1757 141 72 4 0 0 0 0.085319 2 62837 62837;62953 36.506 18.371 1 58639000 14937 8092 10165 10368 17960;17961 17960 0.07183807862361391 FWDIKGKLF 9 Unmodified _FWDIKGKLF_ 0 0 0 ENSG00000181090|ENST00000460843|EHMT1;ENST00000475704.2_1_9:140728608-140729402:+|nuORF;ENST00000475564.5_1_9:140711834-140729402:+|nuORF;ENST00000494249.5_1_9:140710377-140729402:+|nuORF ENSG00000181090|ENST00000460843|EHMT1 ENSG00000181090|ENST00000460843|EHMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2195129394531 3 385.218332 1152.63317 0.80888 0.0003116 -0.56508 -0.00021768 0.24381 9.3918E-05 385.2195324490754 93.483 0.27319 87.307 87.178 87.451 -6.1757 29 17 3 0 0 0 0.12424 1 61863 61863 34.932 25.388 1 8174500 14938 8951 10166 10369 17962 17962 0.06295496753705265 FWDIRQCWHNY 11 Unmodified _FWDIRQCWHNY_ 0 0 0 nc|ENSG00000139624|Q8N5B7-2|CERS5;ENSG00000139624|ENST00000317551|CERS5 nc|ENSG00000139624|Q8N5B7-2|CERS5 nc|ENSG00000139624|Q8N5B7-2|CERS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 784.3502197265625 2 784.348603 1566.68265 -0.30817 -0.00024171 1.3833 0.001085 1.0752 0.0008433 784.3495450668627 56.373 0.38023 56.373 56.184 56.564 0 55 17 5 0 0 0 0.73115 1 31409 31409 1.3295 0.9789 1 27490000 14939 5171 10167 10370 17963 17963 -0.07802163299788845 FWDKKVTHF 9 Unmodified _FWDKKVTHF_ 0 0 0 ENSG00000187231|ENST00000428443|SESTD1;ENST00000486468.1_1_2:180027226-180056568:-|nuORF ENSG00000187231|ENST00000428443|SESTD1 ENSG00000187231|ENST00000428443|SESTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2130737304688 3 403.213469 1206.61858 -0.23717 -9.5631E-05 0.98512 0.00039722 0.74795 0.00030158 403.21416152494396 35.315 0.26323 35.34 35.231 35.494 0.024971 22 12 2 0 0 0 0.15471 1 18690 18690 20.581 13.479 1 4347700 14940 9545 10168 10371 17964 17964 0.023534246055533004 FWDKKVTHF 9 Unmodified _FWDKKVTHF_ 0 0 0 ENSG00000187231|ENST00000428443|SESTD1;ENST00000486468.1_1_2:180027226-180056568:-|nuORF ENSG00000187231|ENST00000428443|SESTD1 ENSG00000187231|ENST00000428443|SESTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2128295898438 3 403.213469 1206.61858 0.63991 0.00025802 0.24447 9.8575E-05 0.88438 0.0003566 403.21346389289187 39.676 0.34618 35.225 35.073 35.42 -4.4509 31 21 2 0 0 0 0.044011 1 23603 23603 43.982 24.356 1 11434000 14941 9545 10168 10371 17965 17965 0.023534246055533004 FWDYGRIAL 9 Unmodified _FWDYGRIAL_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A;ENST00000487817.1_1_1:226059677-226065160:-|nuORF ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.79541015625 2 570.795466 1139.57638 0.26032 0.00014859 0.36044 0.00020574 0.62077 0.00035433 570.7955423670757 74.817 0.25682 74.863 74.728 74.984 0.045959 28 11 3 0 0 0 0.07087 1 41227 41227 39.95 5.548 1 4752600 14942 9775 10169 10372 17966 17966 0.012174491971791213 FWFIIDICY 9 Unmodified _FWFIIDICY_ 0 0 0 REV__nc|ENSG00000119121|Q9BX84-4|TRPM6 REV__nc|ENSG00000119121|Q9BX84-4|TRPM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2001953125 3 407.200061 1218.57835 0.55806 0.00022724 -0.64549 -0.00026284 -0.08743 -3.5602E-05 407.20002215132627 57.71 0.37709 57.644 57.438 57.815 -0.066036 64 18 5 0 0 0 0.53666 1 31464 31464 2.9952 0 1 32234000 + 14943 19180 10170 10373 17967 17967 -0.02219258109198563 FWFRSCHF 8 Unmodified _FWFRSCHF_ 0 0 0 ENST00000571210.1_1_17:19287777-19288718:-|nuORF;ENSG00000166482|ENST00000299610|MFAP4;nc|ENSG00000166482|P55083-2|MFAP4 ENST00000571210.1_1_17:19287777-19288718:-|nuORF ENST00000571210.1_1_17:19287777-19288718:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2550659179688 2 565.255454 1128.49636 0.29827 0.0001686 0.50856 0.00028747 0.80684 0.00045607 565.2556951223614 88.169 0.29177 88.169 87.972 88.264 0 22 16 2 0 0 0 0.80975 1 48771 48771 0.79363 0 1 428320 14944 7497 10171 10374 17968 17968 -0.06275315677658 FWGRCRLDD 9 Unmodified _FWGRCRLDD_ 0 0 0 REV__ENST00000373314.7_1_9:130268657-130269107:-|nuORF REV__ENST00000373314.7_1_9:130268657-130269107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5075073242188 3 389.850314 1166.52911 -0.45797 -0.00017854 -0.23322 -9.0922E-05 -0.69119 -0.00026946 389.85023248809387 20.676 0.19346 20.676 20.576 20.77 0 31 12 4 0 0 0 0.61256 1 10371 10371 0.26902 0.26902 1 4269800 + 14945 26142 10172 10375 17969 17969 -0.04749153345483137 FWGRDPRTPK 10 Unmodified _FWGRDPRTPK_ 0 0 0 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.336181640625 2 630.335821 1258.65709 NaN NaN NaN NaN NaN NaN NaN 94.799 1 94.379 93.879 94.879 -0.42044 0 0 0 0.99514 1 51787 51787 1.1933 0.12188 1 + 14946 29866 10173 10376 17970 17970 0.03810730240047633 FWGRVMFYF 9 Unmodified _FWGRVMFYF_ 0 0 0 ENST00000521792.2_1_8:43126156-43127029:-|nuORF ENST00000521792.2_1_8:43126156-43127029:-|nuORF ENST00000521792.2_1_8:43126156-43127029:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2058715820312 3 418.203917 1251.58992 NaN NaN NaN NaN NaN NaN NaN 55.137 1 54.659 54.159 55.159 -0.47798 0 0 0 0.82396 1 29902 29902 2.7352 0 1 14947 14748 10174 10377 17971 17971 -0.025810162952211613 FWGYSPISSQF 11 Unmodified _FWGYSPISSQF_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|43|1|anti-sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|43|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.20849609375 3 440.208273 1317.60299 -0.58918 -0.00025936 1.0757 0.00047355 0.48656 0.00021419 440.20875070977314 15.418 0.087076 15.404 15.36 15.447 -0.014067 62 27 3 0 0 0 0.72952 1 7550 7550 0.50596 0 1 1299300 + 14948 29411 10175 10378 17972 17972 -0.043109067021305236 FWHFLPLH 8 Unmodified _FWHFLPLH_ 0 0 0 ENST00000371712.3_1_9:139327034-139327620:-|nuORF ENST00000371712.3_1_9:139327034-139327620:-|nuORF ENST00000371712.3_1_9:139327034-139327620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.19482421875 3 366.19575 1095.56542 0.08596 3.1478E-05 -3.0464 -0.0011156 -2.9604 -0.0010841 366.5291623702515 21.895 0.19539 21.909 21.821 22.017 0.013796 12 8 2 0 0 0 0.80975 1 11279 11279 0.45834 0.18932 1 608800 14949 12364 10176 10379 17973 17973 0.021460916135538355 FWHRLQPFGD 10 Unmodified _FWHRLQPFGD_ 0 0 0 REV__ENSG00000171435|ENST00000339824|KSR2 REV__ENSG00000171435|ENST00000339824|KSR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821411132812 3 434.884123 1301.63054 NaN NaN NaN NaN NaN NaN NaN 14.587 1 14.587 14.087 15.087 0 0 0 0 1.0004 1 6947 6947 0.62683 0.21856 1 + 14950 22559 10177 10380 17974 17974 -0.008209586512748501 FWKCPIKKF 9 Unmodified _FWKCPIKKF_ 0 0 0 REV__ENST00000486866.1_1_1:151209168-151212598:+|nuORF REV__ENST00000486866.1_1_1:151209168-151212598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.5619201660156 3 399.559812 1195.65761 NaN NaN NaN NaN NaN NaN NaN 16.322 1 13.765 13.265 14.265 -2.557 0 0 0 0.6557 1 8448 8448 10.8 1.8233 1 + 14951 27813 10178 10381 17975 17975 0.06760433635577101 FWKPWAKLF 9 Unmodified _FWKPWAKLF_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|461|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|461|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|461|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3441162109375 2 611.84222 1221.66989 0.21364 0.00013071 -0.14565 -8.9112E-05 0.067992 4.16E-05 612.3434298461234 97.303 0.55696 97.303 96.995 97.552 0 77 27 3 0 0 0 0.62242 2 53654 53654;53849 0 0 1 10185000 14952 15925 10179 10382 17976;17977 17976 0.06791793370257437 FWKSDLRNV 9 Unmodified _FWKSDLRNV_ 0 0 0 RHOBTB2|p.H220D|1|0.13|ENSG00000008853|chr8:23006903-23006903|C/G|missense_variant RHOBTB2|p.H220D|1|0.13|ENSG00000008853|chr8:23006903-23006903|C/G|missense_variant RHOBTB2|p.H220D|1|0.13|ENSG00000008853|chr8:23006903-23006903|C/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8756713867188 3 388.876857 1163.60874 NaN NaN NaN NaN NaN NaN NaN 18.264 1 18.27 17.77 18.77 0.0060463 0 0 0 0.84021 1 9249 9249 2.7352 0 1 14953 30147 10180 10383 17978 17978 0.033482366001635455 FWKVCWAF 8 Unmodified _FWKVCWAF_ 0 0 0 nc|ENSG00000165970|Q9Y345-2|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;ENSG00000165970|ENST00000525748|SLC6A5 nc|ENSG00000165970|Q9Y345-2|SLC6A5 nc|ENSG00000165970|Q9Y345-2|SLC6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.766357421875 2 543.765123 1085.51569 -0.25989 -0.00014132 -0.368 -0.0002001 -0.62788 -0.00034142 543.7652146902988 39.505 0.32218 39.208 39.029 39.351 -0.29716 18 14 2 0 0 0 0.78849 1 20859 20859 9.3474 2.6243 1 1396600 14954 7414 10181 10384 17979 17979 -0.02364359386774595 FWKWDESF 8 Unmodified _FWKWDESF_ 0 0 0 REV__ENST00000255304.8_1_13:31195267-31195330:+|nuORF REV__ENST00000255304.8_1_13:31195267-31195330:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1762084960938 3 382.174792 1143.50255 NaN NaN NaN NaN NaN NaN NaN 10.168 1 10.168 9.6675 10.668 0 0 0 0 0.97444 1 4829 4829 0.40072 0.16487 1 + 14955 24912 10182 10385 17980 17980 -0.0634651896516516 FWLFCLLFSNP 11 Unmodified _FWLFCLLFSNP_ 0 0 0 REV__ENST00000464395.1_1_10:3190209-3190503:-|nuORF REV__ENST00000464395.1_1_10:3190209-3190503:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.902099609375 3 462.902015 1385.68422 NaN NaN NaN NaN NaN NaN NaN 76.432 1 70.257 69.757 70.757 -6.1757 0 0 0 0.73356 1 49992 49992 8.7518 0 1 + 14956 27373 10183 10386 17981 17981 0.006800777362514054 FWLIPVSLDL 10 Unmodified _FWLIPVSLDL_ 0 0 0 ENST00000554304.5_1_14:61449322-61451461:+|nuORF ENST00000554304.5_1_14:61449322-61451461:+|nuORF ENST00000554304.5_1_14:61449322-61451461:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8472900390625 2 601.844625 1201.6747 NaN NaN NaN NaN NaN NaN NaN 45.414 1 45.386 44.886 45.886 -0.028011 0 0 0 0.042083 1 24395 24395 43.858 0 1 14957 15207 10184 10387 17982 17982 0.08192632722375492 FWLKMWRVKK 10 Unmodified _FWLKMWRVKK_ 0 0 0 ENST00000578479.1_1_17:26919450-26925997:-|nuORF;ENST00000580567.6_1_17:26919450-26925997:-|nuORF ENST00000578479.1_1_17:26919450-26925997:-|nuORF ENST00000578479.1_1_17:26919450-26925997:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 711.41552734375 2 711.41556 1420.81657 NaN NaN NaN NaN NaN NaN NaN 18.623 1 18.629 18.129 19.129 0.0060463 0 0 0 1.0061 1 9445 9445 0 0 1 14958 15542 10185 10388 17983 17983 0.12299147263684063 FWLMVWQQK 9 Unmodified _FWLMVWQQK_ 0 0 0 nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000175354|ENST00000309660|PTPN2 nc|ENSG00000175354|P17706-3|PTPN2 nc|ENSG00000175354|P17706-3|PTPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8832092285156 3 422.554838 1264.64269 NaN NaN NaN NaN NaN NaN NaN 19.1 1 19.108 18.608 19.608 0.0078487 0 0 0 0.85737 1 9705 9705 0.26902 0.062163 1 14959 8514 10186 10389 17984 17984 0.02094941767563796 FWLQLHEI 8 Unmodified _FWLQLHEI_ 0 0 0 ENST00000261489.6_2_13:45010747-45010900:-|nuORF ENST00000261489.6_2_13:45010747-45010900:-|nuORF ENST00000261489.6_2_13:45010747-45010900:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.289794921875 2 543.292559 1084.57057 NaN NaN NaN NaN NaN NaN NaN 34.964 1 34.964 34.464 35.464 0 0 0 0 0.83301 1 18459 18459 21.747 0.20967 1 14960 11245 10187 10390 17985 17985 0.03166350685501129 FWLQLQIRL 9 Unmodified _FWLQLQIRL_ 0 0 0 REV__ENST00000532851.1_1_1:110171267-110171926:+|nuORF REV__ENST00000532851.1_1_1:110171267-110171926:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2438354492188 3 406.244881 1215.71281 NaN NaN NaN NaN NaN NaN NaN 17.926 1 17.926 17.426 18.426 0 0 0 0 0.86004 1 8876 8876 0.26902 0.033176 1 + 14961 28470 10188 10391 17986 17986 0.1135856342768875 FWLSACRSLDL 11 Unmodified _FWLSACRSLDL_ 0 0 0 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 ENSG00000162881|ENST00000378661|OXER1 MSMS AL20221201_MKP_PDAC_01 4 437.5559997558594 3 437.556907 1309.64889 NaN NaN NaN NaN NaN NaN NaN 37.504 1 33.221 32.721 33.721 -4.2835 0 0 0 0.8789 1 22016 22016 8.2864 4.6994 1 14962 6924 10189 10392 17987 17987 0.0064541520844159095 FWLSIKIDL 9 Unmodified _FWLSIKIDL_ 0 0 0 ENST00000554641.1_1_14:61278837-61285503:+|nuORF ENST00000554641.1_1_14:61278837-61285503:+|nuORF ENST00000554641.1_1_14:61278837-61285503:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.83251953125 2 567.831517 1133.64848 0.1737 9.8631E-05 1.1196 0.00063575 1.2933 0.00073438 567.8323131120208 87.941 0.16481 87.994 87.908 88.073 0.053352 14 6 3 0 0 0 0.025842 1 48923 48923 64.236 4.1624 1 13941000 14963 15216 10190 10393 17988 17988 0.08700363550883594 FWMTKMRRWIF 11 Unmodified _FWMTKMRRWIF_ 0 0 0 REV__ENST00000442563.5_2_7:66235310-66235424:+|nuORF REV__ENST00000442563.5_2_7:66235310-66235424:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 801.4153442382812 2 801.415234 1600.81592 NaN NaN NaN NaN NaN NaN NaN 102.63 1 102.52 102.02 103.02 -0.10458 0 0 0 0.9435 1 55989 55989 0 0 1 + 14964 27103 10191 10394 17989 17989 0.039539845523677286 FWNKFLENKS 10 Unmodified _FWNKFLENKS_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.3544311523438 2 656.837862 1311.66117 -0.028325 -1.8605E-05 2.9467 0.0019355 2.9184 0.0019169 656.8386266548728 79.843 0.25038 79.843 79.686 79.936 0 18 10 3 0 0 0 0.23952 1 44259 44259 2.9952 0.26005 1 602970 14965 7315 10192 10395 17990 17990 0.01780774943108554 FWNLFSGFTEA 11 Unmodified _FWNLFSGFTEA_ 0 0 0 REV__ENSG00000178401|ENST00000549441|DNAJC22 REV__ENSG00000178401|ENST00000549441|DNAJC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5436401367188 3 440.208273 1317.60299 0.26326 0.00011589 0.54902 0.00024168 0.81228 0.00035757 440.2086286836849 29.712 0.30971 29.742 29.611 29.921 0.030106 33 12 4 0 0 0 0.68427 1 15496 15496 2.6312 0 1 4671000 + 14966 23042 10193 10396 17991 17991 -0.04310906702107786 FWPCDCHQP 9 Unmodified _FWPCDCHQP_ 0 0 0 REV__ENSG00000125975|ENST00000444723|C20orf173 REV__ENSG00000125975|ENST00000444723|C20orf173 MSMS AL20221201_MKP_PDAC_01 4 566.7238159179688 2 566.720587 1131.42662 NaN NaN NaN NaN NaN NaN NaN 14.406 1 11.903 11.403 12.403 -2.5029 0 0 0 0.85798 1 7316 7316 0.52476 0 1 + 14967 19533 10194 10397 17992 17992 -0.13383562408580474 FWPFIYLILFF 11 Unmodified _FWPFIYLILFF_ 0 0 0 REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5 REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 753.41552734375 2 753.415217 1504.81588 NaN NaN NaN NaN NaN NaN NaN 73.806 1 73.85 73.35 74.35 0.043983 0 0 0 0.94301 1 40676 40676 0.35063 0 1 + 14968 29530 10195 10398 17993 17993 0.08366631095623234 FWPPYVELL 9 Unmodified _FWPPYVELL_ 0 0 0 ENSG00000123219|ENST00000396679|CENPK ENSG00000123219|ENST00000396679|CENPK ENSG00000123219|ENST00000396679|CENPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3113403320312 2 582.310418 1162.60628 0.70351 0.00040966 0.79088 0.00046054 1.4944 0.0008702 582.3106028534716 101.67 0.11566 95.493 95.429 95.545 -6.1757 15 5 4 0 0 0 0.068777 1 68239 68239 40.449 24.601 1 70398000 14969 3692 10196 10399 17994 17994 0.03148388142517433 FWQQSSYETF 10 Unmodified _FWQQSSYETF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.785888671875 2 661.788035 1321.56152 -0.024348 -1.6113E-05 -0.66957 -0.00044311 -0.69391 -0.00045922 661.787222390644 93.544 0.27377 93.544 93.407 93.681 0 27 13 3 0 0 0 0.71123 1 51683 51683 1.6526 0.17072 1 870490 + 14970 21892 10197 10400 17995 17995 -0.08640087461481016 FWRNSDEI 8 Unmodified _FWRNSDEI_ 0 0 0 ENST00000377818.3_1_13:73284394-73284463:-|nuORF ENST00000377818.3_1_13:73284394-73284463:-|nuORF ENST00000377818.3_1_13:73284394-73284463:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1708374023438 3 356.169929 1065.48796 0.87597 0.00031199 1.2768 0.00045474 2.1527 0.00076674 356.1705689370994 23.683 0.47802 20.856 20.595 21.073 -2.8273 51 28 3 0 0 0 0.80606 1 12778 12778 2.9952 0 1 8014600 14971 12531 10198 10401 17996 17996 -0.04216591113299728 FWRRLRKALLD 11 Unmodified _FWRRLRKALLD_ 0 0 0 nc|ENSG00000136869|O00206-3|TLR4;nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4 nc|ENSG00000136869|O00206-3|TLR4 nc|ENSG00000136869|O00206-3|TLR4 MSMS AL20221201_MKP_PDAC_01 4 491.9647827148438 3 491.964889 1472.87284 NaN NaN NaN NaN NaN NaN NaN 0.063512 1 -2.4184 -2.9184 -1.9184 -2.482 0 0 0 0.94337 1 34 34 0.094841 0.094841 1 14972 4873 10199 10402 17997 17997 0.15531491424758315 FWRRWQPRIWA 11 Unmodified _FWRRWQPRIWA_ 0 0 0 nc|ENSG00000129159|P48547|KCNC1;ENSG00000129159|ENST00000265969|KCNC1 nc|ENSG00000129159|P48547|KCNC1 nc|ENSG00000129159|P48547|KCNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 801.436767578125 2 801.433661 1600.85277 NaN NaN NaN NaN NaN NaN NaN 46.251 1 46.217 45.717 46.717 -0.033417 0 0 0 0.9435 1 24877 24877 0 0 1 14973 4117 10200 10403 17998 17998 0.07637740484778988 FWTARLAF 8 Unmodified _FWTARLAF_ 0 0 0 ENSG00000143603|ENST00000271915|KCNN3;nc|ENSG00000143603|Q9UGI6-3|KCNN3;nc|ENSG00000143603|Q9UGI6-2|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 ENSG00000143603|ENST00000271915|KCNN3 MSMS AL20221201_MKP_PDAC_01 4 506.2742004394531 2 506.27417 1010.53379 NaN NaN NaN NaN NaN NaN NaN 98.557 1 92.381 91.881 92.881 -6.1757 0 0 0 0.7268 1 65387 65387 26.884 0.54238 1 14974 5532 10201 10404 17999 17999 0.028940988595991257 FWTMVFTAAF 10 Unmodified _FWTMVFTAAF_ 0 0 0 REV__ENSG00000157551|ENST00000398938|KCNJ15 REV__ENSG00000157551|ENST00000398938|KCNJ15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7967529296875 2 610.794078 1219.5736 0.1144 6.9874E-05 1.9722 0.0012046 2.0866 0.0012745 610.7950782281481 62.831 0.23815 62.831 62.704 62.942 0 14 9 2 0 0 0 0.66569 1 35055 35055 6.7232 3.1267 1 634290 + 14975 21390 10202 10405 18000 18000 -0.027401422519915286 FWVGFVLLW 9 Unmodified _FWVGFVLLW_ 0 0 0 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.82421875 2 583.823495 1165.63244 1.2187 0.00071151 -0.1816 -0.00010602 1.0371 0.00060548 583.8233842696789 82.845 0.41182 82.907 82.664 83.075 0.061996 35 15 3 0 0 0 0.1492 1 45834 45834 28.173 0 1 11477000 14976 2626 10203 10406 18001 18001 0.05624702104637436 FWVLPKYWERY 11 Unmodified _FWVLPKYWERY_ 0 0 0 REV__nc|ENSG00000100433|P57789|KCNK10 REV__nc|ENSG00000100433|P57789|KCNK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 793.9121704101562 2 793.911362 1585.80817 0.12381 9.8294E-05 -1.6377 -0.0013002 -1.5139 -0.0012019 793.9102979121457 87.176 0.29289 86.672 86.54 86.833 -0.50423 27 11 3 0 0 0 0.74203 1 47670 47670 0.30703 0.03801 1 1360900 + 14977 18067 10204 10407 18002 18002 0.03869871828055693 FWVTTNEFSTF 11 Unmodified _FWVTTNEFSTF_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2160949707031 3 460.215316 1377.62412 0.81452 0.00037485 -0.22748 -0.00010469 0.58703 0.00027016 460.2151633316255 60.863 0.30235 60.863 60.743 61.045 0 31 12 3 0 0 0 0.73114 1 33946 33946 1.3296 0 1 2084000 + 14978 19573 10205 10408 18003 18003 -0.04958941393306304 FWVTTNEFSTF 11 Unmodified _FWVTTNEFSTF_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2161254882812 3 460.215316 1377.62412 0.64099 0.00029499 -0.080627 -3.7106E-05 0.56036 0.00025789 460.215204838345 61.382 0.26199 61.382 61.235 61.497 0 31 11 4 0 0 0 0.73114 1 34194 34194 1.3296 0 1 2257900 + 14979 19573 10205 10408 18004 18004 -0.04958941393306304 FWWFAEPFSFF 11 Unmodified _FWWFAEPFSFF_ 0 0 0 REV__ENST00000326793.10_2_3:194999577-194999712:-|nuORF REV__ENST00000326793.10_2_3:194999577-194999712:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 755.8451538085938 2 755.845156 1509.67576 NaN NaN NaN NaN NaN NaN NaN 90.072 1 90.072 89.572 90.572 0 0 0 0 0.9435 1 49835 49835 0 0 1 + 14980 25567 10206 10409 18005 18005 -0.058691529087354866 FWWSLHTKTY 10 Unmodified _FWWSLHTKTY_ 0 0 0 REV__ENST00000506422.1_1_4:159593611-159624618:+|nuORF REV__ENST00000506422.1_1_4:159593611-159624618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.8385620117188 2 684.840405 1367.66626 0.12569 8.6079E-05 -1.5642 -0.0010712 -1.4385 -0.00098517 684.8379519489998 50.129 0.20424 50.129 50.032 50.236 0 15 9 2 0 0 0 0.5933 1 27620 27620 11.495 0 1 2783700 + 14981 28089 10207 10410 18006 18006 -0.0028692119426523277 FWWVERNF 8 Unmodified _FWWVERNF_ 0 0 0 ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2879028320312 2 592.287808 1182.56106 NaN NaN NaN NaN NaN NaN NaN 93.195 1 92.737 92.237 93.237 -0.4574 0 0 0 0.97444 1 50933 50933 0.79363 0 1 14982 11499 10208 10411 18007 18007 -0.022914176000085718 FWWWQDNWLWH 11 Unmodified _FWWWQDNWLWH_ 0 0 0 ENST00000431490.1_1_3:45201441-45201549:-|nuORF ENST00000431490.1_1_3:45201441-45201549:-|nuORF ENST00000431490.1_1_3:45201441-45201549:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.3814086914062 2 852.38076 1702.74697 0.037241 3.1743E-05 0.46886 0.00039965 0.5061 0.00043139 852.3812724923212 85.804 0.14532 85.804 85.745 85.89 0 7 5 2 0 0 0 0.7453 1 47546 47546 0 0 1 457090 14983 13258 10209 10412 18008 18008 -0.07629640151344574 FWYSCLCL 8 Unmodified _FWYSCLCL_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|201|2|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|201|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7247314453125 2 517.727349 1033.44015 NaN NaN NaN NaN NaN NaN NaN 90.818 1 90.323 89.823 90.823 -0.49457 0 0 0 0.94749 1 49642 49642 11.114 0 1 + 14984 29441 10210 10413 18009 18009 -0.07523704629352324 FWYVYIVY 8 Unmodified _FWYVYIVY_ 0 0 0 ENST00000356577.8_2_21:34948883-34949093:+|nuORF ENST00000356577.8_2_21:34948883-34949093:+|nuORF ENST00000356577.8_2_21:34948883-34949093:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7930908203125 2 576.791861 1151.56917 0.60345 0.00034806 -2.0681 -0.0011929 -1.4646 -0.0008448 576.7900874626114 71.486 0.44112 71.008 70.705 71.146 -0.47735 28 18 2 0 0 0 0.76859 1 39146 39146 11.114 0.29054 1 541820 14985 12092 10211 10414 18010 18010 -0.0005528340325327008 FYADHPFIFL 10 Unmodified _FYADHPFIFL_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.320556640625 2 635.318774 1268.623 1.7958 0.0011409 0.62606 0.00039775 2.4219 0.0015387 635.8205207679332 93.428 0.32028 93.451 93.3 93.62 0.022987 27 12 3 0 0 0 0.035736 1 51924 51924 65.235 32.93 1 4943200 14986 5995 10212 10415 18011 18011 -0.0005711097155653988 FYADHPFIFL 10 Unmodified _FYADHPFIFL_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3190307617188 2 635.318774 1268.623 0.9458 0.00060089 -0.92654 -0.00058865 0.01926 1.2236E-05 635.3184278854982 100.01 0.15811 93.837 93.78 93.938 -6.1757 15 10 2 0 0 0 0.0020965 1 66782 66782 108 53.223 1 39301000 14987 5995 10212 10415 18012 18012 -0.0005711097155653988 FYADRFLKF 9 Unmodified _FYADRFLKF_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.8813171386719 3 402.88172 1205.62333 0.47389 0.00019092 -0.75324 -0.00030347 -0.27934 -0.00011254 402.88133526598426 65.339 0.31767 65.339 65.16 65.478 7.6294E-06 40 14 4 0 0 0 0.044011 1 35775 35775 37.075 20.926 1 46158000 14988 2483 10213 10416 18013 18013 0.028743087483007912 FYADRFLKF 9 Unmodified _FYADRFLKF_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.8821716308594 3 402.88172 1205.62333 0.98156 0.00039545 -0.22226 -8.9545E-05 0.7593 0.00030591 402.8817840735747 91.142 0.67621 84.966 84.543 85.219 -6.1757 98 39 3 0 0 0 0.10247 3 60049 60049;60176;60304 26.021 9.8716 1 31096000 14989 2483 10213 10416 18014;18015;18016 18014 0.028743087483007912 FYADRFLKF 9 Unmodified _FYADRFLKF_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8179321289062 2 603.818941 1205.62333 0.33919 0.00020481 -1.8519 -0.0011182 -1.5127 -0.00091339 603.8182534946542 91.149 0.47551 84.973 84.67 85.145 -6.1757 49 27 2 0 0 0 0.0089732 2 60249 60108;60249 86.332 52.229 1 9334100 14990 2483 10213 10416 18017;18018 18018 0.028743087483007912 FYAELYHII 9 Unmodified _FYAELYHII_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8082275390625 2 584.8055 1167.59645 0.69401 0.00040586 -0.22294 -0.00013037 0.47108 0.00027549 584.8053768632215 79.391 0.61403 78.901 78.55 79.164 -0.48932 76 26 4 0 0 0 0.045537 2 43426 43426;43528 46.921 33.413 1 21515000 14991 1890 10214 10417 18019;18020 18019 0.0193520013710895 FYAELYHII 9 Unmodified _FYAELYHII_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.804931640625 2 584.8055 1167.59645 NaN NaN NaN NaN NaN NaN NaN 79.659 1 79.17 78.67 79.67 -0.48932 0 0 0 0.84369 1 43633 43633 2.3027 0 1 14992 1890 10214 10417 18021 18021 0.0193520013710895 FYAELYHII 9 Unmodified _FYAELYHII_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.805419921875 2 584.8055 1167.59645 0.74841 0.00043767 -0.5308 -0.00031042 0.21761 0.00012726 584.8053089050909 78.791 0.56987 78.846 78.535 79.105 0.054977 74 22 5 0 0 0 0.016494 2 43566 43465;43566 67.035 43.246 1 56161000 14993 1890 10214 10417 18022;18023 18023 0.0193520013710895 FYAELYHII 9 Unmodified _FYAELYHII_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559005.2_1_14:24612620-24612898:-|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.806396484375 2 584.8055 1167.59645 1.3034 0.00076224 -0.16984 -9.9325E-05 1.1336 0.00066291 584.8052611047553 95.817 0.49356 89.641 89.399 89.893 -6.1757 111 30 5 0 0 0 0.012158 3 63356 63356;63476;63593 74.396 46.621 1 289610000 14994 1890 10214 10417 18024;18025;18026 18024 0.0193520013710895 FYAERFFKF 9 Unmodified _FYAERFFKF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8824462890625 3 418.88172 1253.62333 0.27284 0.00011429 1.1501 0.00048177 1.423 0.00059606 418.88211035940924 67.871 0.26841 67.892 67.75 68.019 0.020561 36 12 4 0 0 0 0.094905 1 37250 37250 34.222 22.047 1 8016100 14995 16461 10215 10418 18027 18027 0.0066630874830480025 FYAERFFKF 9 Unmodified _FYAERFFKF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.8203125 2 627.818941 1253.62333 0.92409 0.00058016 1.0318 0.00064779 1.9559 0.0012279 628.3211506650114 94.007 0.11259 87.832 87.749 87.862 -6.1757 7 5 2 0 0 0 0.070983 1 62266 62266 49.527 26.379 1 6557400 14996 16461 10215 10418 18028 18028 0.0066630874830480025 FYAERFFKF 9 Unmodified _FYAERFFKF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MSMS AL20221201_MKP_PDAC_01 4 418.8822937011719 3 418.88172 1253.62333 NaN NaN NaN NaN NaN NaN NaN 93.986 1 87.81 87.31 88.31 -6.1757 0 0 0 0.24069 1 62242 62242 28.234 15.191 1 14997 16461 10215 10418 18029 18029 0.0066630874830480025 FYAERFQRF 9 Unmodified _FYAERFQRF_ 0 0 0 nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;ENST00000486866.1_1_1:151209168-151212598:+|nuORF nc|ENSG00000143398|Q99755-2|PIP5K1A nc|ENSG00000143398|Q99755-2|PIP5K1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8808288574219 3 421.88049 1262.61964 0.58857 0.00024831 -0.094643 -3.9928E-05 0.49393 0.00020838 421.8804943823559 42.923 0.24092 42.908 42.779 43.02 -0.015667 26 10 4 0 0 0 0.022193 1 22980 22980 55.503 39.354 1 9686000 14998 5507 10216 10419 18030 18030 -0.001163610255389358 FYAERFQRF 9 Unmodified _FYAERFQRF_ 0 0 0 nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;ENST00000486866.1_1_1:151209168-151212598:+|nuORF nc|ENSG00000143398|Q99755-2|PIP5K1A nc|ENSG00000143398|Q99755-2|PIP5K1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2171325683594 3 421.88049 1262.61964 1.2813 0.00054058 1.3352 0.00056328 2.6165 0.0011039 421.88077801188615 47.955 0.27478 42.721 42.534 42.808 -5.2339 27 16 2 0 0 0 0.044011 2 29732 29732;29800 37.075 24.9 1 14989000 14999 5507 10216 10419 18031;18032 18031 -0.001163610255389358 FYAFLASKF 9 Unmodified _FYAFLASKF_ 0 0 0 ENSG00000146909|ENST00000275820|NOM1 ENSG00000146909|ENST00000275820|NOM1 ENSG00000146909|ENST00000275820|NOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7718505859375 2 547.289485 1092.56442 0.16486 9.0226E-05 3.7649 0.0020605 3.9297 0.0021507 547.2897397254285 76.453 0.28539 76.501 76.326 76.611 0.047943 20 11 3 0 0 0 0.15471 1 42154 42154 27.629 15.097 1 1821300 15000 5808 10217 10420 18033 18033 0.02183832453965806 FYAHKVLLF 9 Unmodified _FYAHKVLLF_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3;nc|ENSG00000151136|A6QL63-4|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8876037597656 3 379.886694 1136.63825 0.57603 0.00021883 0.41338 0.00015704 0.98941 0.00037586 379.8868397128131 58.585 0.36745 58.524 58.353 58.72 -0.060719 44 18 4 0 0 0 0.078314 1 31891 31891 38.176 17.761 1 14278000 15001 6093 10218 10421 18034 18034 0.07539800616314096 FYAHKVLLF 9 Unmodified _FYAHKVLLF_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3;nc|ENSG00000151136|A6QL63-4|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8868103027344 3 379.886694 1136.63825 1.5913 0.0006045 -0.40824 -0.00015509 1.183 0.00044941 379.88656057894667 92.03 0.31863 85.854 85.686 86.005 -6.1757 46 18 3 0 0 0 0.078314 2 60925 60801;60925 38.176 17.289 1 44911000 15002 6093 10218 10421 18035;18036 18036 0.07539800616314096 FYAHKVLLF 9 Unmodified _FYAHKVLLF_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3;nc|ENSG00000151136|A6QL63-4|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.327392578125 2 569.326402 1136.63825 1.2439 0.00070817 -0.085422 -4.8633E-05 1.1584 0.00065953 569.3262292868573 92.051 0.20988 85.875 85.757 85.967 -6.1757 21 12 2 0 0 0 0.012668 1 60887 60887 71.134 39.865 1 12470000 15003 6093 10218 10421 18037 18037 0.07539800616314096 FYAIKDEAL 9 Unmodified _FYAIKDEAL_ 0 0 0 nc|ENSG00000181322|Q86XW9-2|NME9 nc|ENSG00000181322|Q86XW9-2|NME9 nc|ENSG00000181322|Q86XW9-2|NME9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.8037719726562 2 535.281857 1068.54916 0.38762 0.00020749 -0.33687 -0.00018032 0.050757 2.7169E-05 535.2823646093254 82.201 0.43572 76.025 75.78 76.215 -6.1757 29 23 2 0 0 0 0.17275 1 53960 53960 21.747 0 1 12000000 15004 16429 10219 10422 18038 18038 0.01762920866121931 FYALQINSL 9 Unmodified _FYALQINSL_ 0 0 0 ENSG00000178966|ENST00000445877|RMI1 ENSG00000178966|ENST00000445877|RMI1 ENSG00000178966|ENST00000445877|RMI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7906494140625 2 534.78985 1067.56515 1.8552 0.00099216 -2.3684 -0.0012666 -0.51319 -0.00027445 534.7885178544828 81.851 0.32607 81.911 81.68 82.006 0.059929 23 12 2 0 0 0 0.045537 1 45265 45265 46.921 22.247 1 3051000 15005 8789 10220 10423 18039 18039 0.034066271030496864 FYALVQYTL 9 Unmodified _FYALVQYTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3015747070312 2 559.30005 1116.58555 1.4487 0.00081028 3.0338 0.0016968 4.4826 0.0025071 559.3018544106608 98.406 0.32373 92.231 92.014 92.338 -6.1757 37 21 3 0 0 0 0.045537 1 65140 65140 46.921 12.818 1 51669000 15006 10362 10221 10424 18040 18040 0.03191797762860915 FYATSIFQL 9 Unmodified _FYATSIFQL_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2845458984375 2 545.2844 1088.55425 2.3117 0.0012605 -1.2764 -0.000696 1.0353 0.00056451 545.283513336004 96.395 0.36611 96.388 96.221 96.587 -0.007019 28 12 3 0 0 0 0.019979 1 53519 53519 63.563 40.414 1 5015500 15007 7000 10222 10425 18041 18041 0.013512247287508217 FYAYLSTTTQ 10 Unmodified _FYAYLSTTTQ_ 0 0 0 REV__ENSG00000173572|ENST00000342929|NLRP13 REV__ENSG00000173572|ENST00000342929|NLRP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.791748046875 2 597.787504 1193.56045 3.2736 0.0019569 3.4888 0.0020855 6.7624 0.0040425 597.7899640694643 97.903 0.65771 97.885 97.705 98.363 -0.018188 37 23 3 0 0 0 0.38092 1 54407 54407 22.736 2.3217 1 2447600 + 15008 22738 10223 10426 18042 18042 -0.028583018304061625 FYCNPQPCF 9 2 Carbamidomethyl (C) _FYC(Carbamidomethyl (C))NPQPC(Carbamidomethyl (C))F_ FYC(1)NPQPC(1)F FYC(64)NPQPC(64)F 0 2 0 ENSG00000006831|ENST00000357103|ADIPOR2 ENSG00000006831|ENST00000357103|ADIPOR2 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7479248046875 2 616.746802 1231.47905 0.92127 0.00056819 -0.069414 -4.2811E-05 0.85186 0.00052538 616.7466572573386 61.142 0.30946 54.994 54.846 55.156 -6.1478 27 15 2 0 0 0 0.019979 2 39328 39328;39471 63.563 49.657 1 40613000 15009 353 10224 10427 18043;18044 18043 15;16 -0.12743024065639474 FYCQCSPGF 9 Unmodified _FYCQCSPGF_ 0 0 0 nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1 nc|ENSG00000115380|Q12805-2|EFEMP1 nc|ENSG00000115380|Q12805-2|EFEMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2030029296875 2 526.204238 1050.39392 NaN NaN NaN NaN NaN NaN NaN 60.256 1 59.765 59.265 60.265 -0.49079 0 0 0 0.82015 1 32808 32808 5.2307 0 1 15010 3118 10225 10428 18045 18045 -0.1292576953144362 FYCQLGRN 8 Unmodified _FYCQLGRN_ 0 0 0 ENSG00000218819|ENST00000405799|TDRD15 ENSG00000218819|ENST00000405799|TDRD15 ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7384033203125 2 500.737094 999.459635 0.44868 0.00022467 1.0965 0.00054907 1.5452 0.00077374 500.7376555381339 52.113 0.22927 52.054 51.939 52.168 -0.058918 24 10 3 0 0 0 0.61462 1 28213 28213 24.674 3.8027 1 3100200 15011 10545 10226 10429 18046 18046 -0.040116122942208676 FYDDGRPSL 9 Unmodified _FYDDGRPSL_ 0 0 0 REV__ENSG00000153201|ENST00000283195|RANBP2 REV__ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.253662109375 2 535.251089 1068.48762 0.41992 0.00022476 1.7257 0.00092371 2.1457 0.0011485 535.2521453846882 64.833 0.56001 64.348 64.014 64.574 -0.48512 32 25 2 0 0 0 0.5029 1 35386 35386 7.2892 1.5288 1 1090500 + 15012 21158 10227 10430 18047 18047 -0.043880108331450174 FYDDKVSAL 9 Unmodified _FYDDKVSAL_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2627563476562 2 529.263665 1056.51278 -0.28422 -0.00015043 -1.2976 -0.00068679 -1.5818 -0.00083721 529.2631199167226 44.625 0.17672 44.309 44.189 44.366 -0.31585 13 8 2 0 0 0 0.014763 1 23807 23807 83.429 35.083 1 10641000 15013 4799 10228 10431 18048 18048 -0.013219560305742561 FYDDKVSAL 9 Unmodified _FYDDKVSAL_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2648315429688 2 529.263665 1056.51278 1.0634 0.00056283 1.169 0.00061872 2.2325 0.0011816 529.2644136867465 50.727 0.48177 45.078 44.834 45.316 -5.649 69 29 3 0 0 0 0.21589 1 31955 31955 29.082 3.6823 1 126060000 15014 4799 10228 10431 18049 18049 -0.013219560305742561 FYDECLRKY 9 Carbamidomethyl (C) _FYDEC(Carbamidomethyl (C))LRKY_ FYDEC(1)LRKY FYDEC(68)LRKY 0 1 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8695983886719 3 431.869262 1292.58596 0.9919 0.00042837 -0.28422 -0.00012275 0.70769 0.00030563 431.8692391330604 39.336 0.43266 34.885 34.675 35.107 -4.4509 79 26 4 0 0 0 0.015688 2 23229 23229;23363 67.838 40.647 1 147280000 15015 6041;2224 10229 10432 18050;18051 18050 220 -0.048631505796038255 FYDECLRKY 9 Carbamidomethyl (C) _FYDEC(Carbamidomethyl (C))LRKY_ FYDEC(1)LRKY FYDEC(130)LRKY 0 1 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3006591796875 2 647.300255 1292.58596 0.79077 0.00051187 0.11237 7.2737E-05 0.90314 0.0005846 647.3004587968151 39.347 0.32497 34.896 34.689 35.014 -4.4509 42 19 3 0 0 0 0.0030184 1 23304 23304 126.57 63.993 1 23969000 15016 6041;2224 10229 10432 18052 18052 220 -0.048631505796038255 FYDERIVVV 9 Unmodified _FYDERIVVV_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3096313476562 2 570.308406 1138.60226 0.44749 0.0002552 0.34192 0.000195 0.78941 0.0004502 570.3084685322544 59.175 0.30334 59.175 59.004 59.307 0 40 12 4 0 0 0 0.076472 2 32906 32906;33010 38.615 21.502 1 21380000 15017 927 10230 10433 18053;18054 18053 0.038502986487856106 FYDERIVVV 9 Unmodified _FYDERIVVV_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.31005859375 2 570.308406 1138.60226 0.47378 0.0002702 0.28505 0.00016257 0.75883 0.00043277 570.3084055438476 59.706 0.4246 59.215 58.968 59.392 -0.49079 60 20 4 0 0 0 0.098164 2 32426 32426;32530 33.445 18.196 1 57827000 15018 927 10230 10433 18055;18056 18055 0.038502986487856106 FYDERIVVV 9 Unmodified _FYDERIVVV_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3087158203125 2 570.308406 1138.60226 0.51791 0.00029537 -0.67554 -0.00038526 -0.15763 -8.9896E-05 570.3083563526608 65.684 1.102 59.509 59.266 60.368 -6.1757 141 63 4 0 0 0 0.053952 5 42826 42548;42557;42690;42826;43000 43.982 23.169 1 96197000 15019 927 10230 10433 18057;18058;18059;18060;18061 18060 0.038502986487856106 FYDERIVVV 9 Unmodified _FYDERIVVV_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.308406 1138.60226 0.37628 0.00021459 0.47606 0.0002715 0.85233 0.00048609 570.308712795539 59.312 0.1194 59.259 59.174 59.293 -0.053062 -0.030684 0.00056182 NaN 43.982 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3678200 15020 927 10230 10433 0.038502986487856106 FYDESKPF 8 Unmodified _FYDESKPF_ 0 0 0 nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7376708984375 2 516.737283 1031.46001 -0.081233 -4.1976E-05 -0.2014 -0.00010407 -0.28263 -0.00014605 516.7370794931477 40.636 0.24834 40.636 40.51 40.758 0 22 13 2 0 0 0 0.32798 1 21835 21835 52.268 19.963 1 4599200 15021 4186 10231 10434 18062 18062 -0.054459140933886374 FYDESKPF 8 Unmodified _FYDESKPF_ 0 0 0 nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.737283 1031.46001 0.15755 8.1413E-05 -0.038664 -1.9979E-05 0.11889 6.1434E-05 516.7374771720289 41.072 0.23146 40.769 40.678 40.909 -0.30304 0.066862 8.2715E-05 NaN 52.268 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1271000 15022 4186 10231 10434 -0.054459140933886374 FYDLSAISL 9 Unmodified _FYDLSAISL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.769287109375 2 514.768583 1027.52261 0.29148 0.00015005 -0.21372 -0.00011002 0.077763 4.003E-05 514.7687221540907 88.376 0.18974 88.429 88.379 88.569 0.053352 13 7 2 0 0 0 0.038285 1 49192 49192 50.855 6.448 1 10811000 15023 8569 10232 10435 18063 18063 0.009952319747981164 FYDLSAISL 9 Unmodified _FYDLSAISL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 514.7694702148438 2 514.768583 1027.52261 NaN NaN NaN NaN NaN NaN NaN 98.42 1 92.244 91.744 92.744 -6.1757 0 0 0 0.071041 1 65279 65279 50.855 20.63 1 15024 8569 10232 10435 18064 18064 0.009952319747981164 FYDLSAISL 9 Unmodified _FYDLSAISL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 514.7686157226562 2 514.768583 1027.52261 NaN NaN NaN NaN NaN NaN NaN 98.695 1 92.52 92.02 93.02 -6.1757 0 0 0 0.20498 1 65506 65506 30.225 0 1 15025 8569 10232 10435 18065 18065 0.009952319747981164 FYDPKAQVL 9 Unmodified _FYDPKAQVL_ 0 0 0 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2920532226562 2 540.78985 1079.56515 0.47707 0.00025799 0.49165 0.00026588 0.96871 0.00052387 540.7900573764418 46.958 0.27547 46.622 46.462 46.737 -0.33664 27 13 3 0 0 0 0.039985 1 25123 25123 49.933 31.787 1 7889700 15026 16185 10233 10436 18066 18066 0.028546271030336356 FYDPKAQVL 9 Unmodified _FYDPKAQVL_ 0 0 0 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.790771484375 2 540.78985 1079.56515 0.84541 0.00045719 -2.5062 -0.0013553 -1.6608 -0.00089813 541.2889673269615 52.943 0.47483 47.139 46.891 47.365 -5.8042 37 26 2 0 0 0 0.0086904 2 33440 33359;33440 107.19 57.254 1 39207000 15027 16185 10233 10436 18067;18068 18068 0.028546271030336356 FYDPKAQVL 9 Unmodified _FYDPKAQVL_ 0 0 0 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 nc|ENSG00000130202|Q92692-2|NECTIN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.78985 1079.56515 1.3148 0.00071102 -0.85447 -0.00046209 0.46031 0.00024893 541.2905128056885 46.656 0.20205 46.623 46.51 46.712 -0.033421 0.00053765 -0.0010316 NaN 49.933 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1368900 15028 16185 10233 10436 0.028546271030336356 FYDPLAGKVLL 11 Unmodified _FYDPLAGKVLL_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3563232421875 2 618.355357 1234.69616 1.1884 0.00073483 -0.92462 -0.00057174 0.26375 0.00016309 618.355179685722 98.113 0.15126 91.937 91.817 91.968 -6.1757 12 9 2 0 0 0 0.12646 1 65049 65049 55.235 39.387 1 14968000 15029 1413 10234 10437 18069 18069 0.0882001775109984 FYDQFAIAQF 10 Unmodified _FYDQFAIAQF_ 0 0 0 ENSG00000258986|ENST00000556573|TMEM179 ENSG00000258986|ENST00000556573|TMEM179 ENSG00000258986|ENST00000556573|TMEM179 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2024841308594 3 417.201118 1248.58152 0.77437 0.00032307 0.74661 0.00031149 1.521 0.00063456 417.20150611938743 45.042 0.3818 40.19 39.975 40.357 -4.852 63 24 3 0 0 0 0.66569 1 27485 27485 6.1918 3.9391 1 42273000 15030 10821 10235 10438 18070 18070 -0.032822917308976685 FYDQQVPF 8 Unmodified _FYDQQVPF_ 0 0 0 ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5;ENST00000472868.6_1_3:185783843-185823657:-|nuORF;ENST00000476890.1_1_3:185813076-185826774:-|nuORF ENSG00000244405|ENST00000306376|ETV5 ENSG00000244405|ENST00000306376|ETV5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2421875 2 522.245275 1042.476 0.20221 0.0001056 -3.428 -0.0017903 -3.2258 -0.0016847 522.7447048110918 58.149 0.16914 57.659 57.533 57.702 -0.48974 12 7 2 0 0 0 0.48669 1 31609 31609 36.044 5.4077 1 2475900 15031 10729 10236 10439 18071 18071 -0.043542078564769326 FYDQRQVLL 9 Unmodified _FYDQRQVLL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3196411132812 2 591.319306 1180.62406 0.20798 0.00012298 0.28434 0.00016814 0.49232 0.00029112 591.3195796354372 54.247 0.27644 53.78 53.606 53.882 -0.46664 40 13 4 0 0 0 0.02676 1 29349 29349 61.602 23.426 1 11567000 15032 367 10237 10440 18072 18072 0.040971033973846716 FYDQRQVLL 9 Unmodified _FYDQRQVLL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3189697265625 2 591.319306 1180.62406 0.80362 0.0004752 -0.24753 -0.00014637 0.55609 0.00032883 591.3192686916213 60.201 0.38876 54.086 53.902 54.29 -6.1147 44 19 3 0 0 0 0.0094802 2 38663 38663;38802 89.401 49.451 1 49020000 15033 367 10237 10440 18073;18074 18073 0.040971033973846716 FYDSQPTLI 9 Unmodified _FYDSQPTLI_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.271484375 2 542.27149 1082.52843 0.46232 0.0002507 4.1059 0.0022265 4.5682 0.0024772 542.2741442171097 64.327 0.23573 63.842 63.779 64.014 -0.48512 19 10 2 0 0 0 0.30562 1 35113 35113 16.942 5.302 1 1031900 15034 1381 10238 10441 18075 18075 -0.009536695135011541 FYDTNSIDY 9 Unmodified _FYDTNSIDY_ 0 0 0 REV__ENSG00000160712|ENST00000368485|IL6R REV__ENSG00000160712|ENST00000368485|IL6R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4780578613281 3 379.82935 1136.46622 0.23935 9.0913E-05 1.3738 0.00052181 1.6132 0.00061272 379.8298640022658 54.886 0.23922 54.886 54.79 55.029 0 12 10 2 0 0 0 0.21302 1 30462 30462 5.7319 0 1 2223000 + 15035 21559 10239 10442 18076 18076 -0.09655440652522884 FYECGHCGKGF 11 Unmodified _FYECGHCGKGF_ 0 0 0 ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707 ENST00000527561.5_1_8:144766681-144776697:+|nuORF ENST00000527561.5_1_8:144766681-144776697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.83837890625 3 416.503926 1246.48995 0.51127 0.00021294 -1.5767 -0.00065672 -1.0655 -0.00044377 416.50322674507277 70.313 0.31216 70.349 70.214 70.526 0.035515 46 14 4 0 0 0 0.72981 1 38705 38705 1.4551 0.26178 1 9582200 15036 8953 10240 10443 18077 18077 -0.12343621691366025 FYECGHCGKGF 11 Unmodified _FYECGHCGKGF_ 0 0 0 ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707 ENST00000527561.5_1_8:144766681-144776697:+|nuORF ENST00000527561.5_1_8:144766681-144776697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5035400390625 3 416.503926 1246.48995 0.66437 0.00027671 -0.38028 -0.00015839 0.28409 0.00011833 416.50367802040154 82.366 0.27933 76.19 76.044 76.323 -6.1757 21 14 2 0 0 0 0.71503 1 54111 54111 2.8433 2.0668 1 7588500 15037 8953 10240 10443 18078 18078 -0.12343621691366025 FYECGHCGKGF 11 Unmodified _FYECGHCGKGF_ 0 0 0 ENST00000527561.5_1_8:144766681-144776697:+|nuORF;ENST00000532486.5_1_8:144774355-144776697:+|nuORF;ENSG00000181135|ENST00000358656|ZNF707 ENST00000527561.5_1_8:144766681-144776697:+|nuORF ENST00000527561.5_1_8:144766681-144776697:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 416.503926 1246.48995 0.42149 0.00017555 -1.6238 -0.0006763 -1.2023 -0.00050075 416.50326331335106 70.915 0.21764 70.438 70.308 70.526 -0.47735 0.044462 -4.6204E-05 NaN 1.4551 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 552410 15038 8953 10240 10443 -0.12343621691366025 FYEEEEDFF 9 Unmodified _FYEEEEDFF_ 0 0 0 REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7473754882812 2 627.745502 1253.47645 0.14787 9.2826E-05 0.055786 3.5019E-05 0.20366 0.00012784 627.7462572242908 52.982 0.36259 52.53 52.36 52.723 -0.45173 45 18 4 0 0 0 0.53666 1 28618 28618 5.2307 0.90143 1 2852700 + 15039 23242 10241 10444 18079 18079 -0.14014877717954732 FYEEEEDFF 9 Unmodified _FYEEEEDFF_ 0 0 0 REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 627.745502 1253.47645 0.050342 3.1602E-05 3.0671 0.0019253 3.1174 0.0019569 627.7469748902226 52.346 0.22398 52.346 52.243 52.467 0 -0.091945 0.003267 NaN 5.2307 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 830610 + 15040 23242 10241 10444 -0.14014877717954732 FYEEEEDFF 9 Unmodified _FYEEEEDFF_ 0 0 0 REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF REV__ENST00000466258.1_1_1:231155611-231164468:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.745502 1253.47645 0.14787 9.2826E-05 0.055786 3.5019E-05 0.20366 0.00012784 627.7462572242908 52.982 0.36259 52.53 52.36 52.723 -0.45173 0.091945 -0.00051358 NaN 5.2307 45 18 4 NaN NaN NaN NaN 0 NaN NaN 0 2852700 + 15041 23242 10241 10444 -0.14014877717954732 FYEKKAAKL 9 Unmodified _FYEKKAAKL_ 0 0 0 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8852233886719 3 366.54997 1096.62808 1.5027 0.0005508 -0.19451 -7.1297E-05 1.3081 0.0004795 366.549834678379 19.024 0.2663 16.402 16.223 16.49 -2.6215 26 16 2 0 0 0 0.14 2 10039 10039;10045 27.223 16.424 1 2386400 15042 16042 10242 10445 18080;18081 18080 0.08363192891079052 FYELGEEAMEM 11 Unmodified _FYELGEEAMEM_ 0 0 0 nc|ENSG00000177301|P16389-2|KCNA2;ENSG00000177301|ENST00000316361|KCNA2 nc|ENSG00000177301|P16389-2|KCNA2 nc|ENSG00000177301|P16389-2|KCNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.18603515625 3 450.18604 1347.53629 0.69853 0.00031447 -0.78669 -0.00035416 -0.088154 -3.9686E-05 450.185557715119 61.87 0.25618 61.838 61.65 61.906 -0.032787 37 12 4 0 0 0 0.71036 1 33758 33758 1.3296 0 1 20157000 15043 8672 10243 10446 18082 18082 -0.1235764637056036 FYELKDRWN 9 Unmodified _FYELKDRWN_ 0 0 0 REV__nc|ENSG00000163050|Q8NI60-3|COQ8A;REV__ENST00000478406.5_1_1:227170215-227170924:+|nuORF REV__nc|ENSG00000163050|Q8NI60-3|COQ8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3142700195312 2 635.814387 1269.61422 0.96732 0.00061503 0.3941 0.00025057 1.3614 0.00086561 636.316892773336 86.884 0.37503 80.708 80.588 80.963 -6.1757 30 20 2 0 0 0 0.2143 1 57294 57294 21.747 4.6338 1 11573000 + 15044 21719;27635 10244 10447 18083 18083 -0.009800846079997427 FYEPWELY 8 Unmodified _FYEPWELY_ 0 0 0 REV__ENSG00000129187|ENST00000438320|DCTD REV__ENSG00000129187|ENST00000438320|DCTD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8427734375 3 382.842931 1145.50696 0.73051 0.00027967 0.53344 0.00020422 1.264 0.00048389 382.84300592693285 42.626 0.35342 42.626 42.445 42.798 0 27 17 2 0 0 0 0.80232 1 23093 23093 3.5965 1.098 1 2322400 + 15045 19655 10245 10448 18084 18084 -0.05997054542240221 FYEVFKVL 8 Unmodified _FYEVFKVL_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.7926025390625 2 522.791861 1043.56917 NaN NaN NaN NaN NaN NaN NaN 31.521 1 27.825 27.325 28.325 -3.6958 0 0 0 0.83301 1 17859 17859 21.747 0 1 15046 1156 10246 10449 18085 18085 0.049127165967547626 FYFALRDTLV 10 Unmodified _FYFALRDTLV_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 622.2952270507812 2 622.837331 1243.66011 1.0504 0.00065421 -1.2715 -0.00079194 -0.22114 -0.00013773 622.8362691070314 95.952 0.17295 89.776 89.66 89.833 -6.1757 17 9 2 0 0 0 0.23896 1 63522 63522 3.5965 0 1 15494000 15047 3003 10247 10450 18086 18086 0.04802560574216841 FYFCCRELRE 10 Unmodified _FYFCCRELRE_ 0 0 0 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 nc|ENSG00000160505|Q96MN2-3|NLRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.8755493164062 3 455.874131 1364.60056 0.98874 0.00045074 1.8329 0.00083559 2.8217 0.0012863 456.2093231407134 58.23 0.15751 58.169 58.097 58.254 -0.060722 18 7 3 0 0 0 0.69385 1 31740 31740 3.5871 0.95582 1 1977400 15048 6732;16317 10248 10451 18087 18087 -0.06715401703104362 FYFCSCIWGTF 11 Unmodified _FYFCSCIWGTF_ 0 0 0 TRAM1L1|p.F131C|1|0.19|ENSG00000174599|chr4:117085002-117085002|A/C|missense_variant TRAM1L1|p.F131C|1|0.19|ENSG00000174599|chr4:117085002-117085002|A/C|missense_variant TRAM1L1|p.F131C|1|0.19|ENSG00000174599|chr4:117085002-117085002|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.287353515625 2 687.288302 1372.56205 -0.01387 -9.5329E-06 -1.2969 -0.00089136 -1.3108 -0.00090089 687.287603685955 63.249 0.47118 63.249 62.963 63.434 0 31 20 3 0 0 0 0.68427 2 35189 35189;35296 5.7319 2.4505 1 2242700 15049 30198 10249 10452 18088;18089 18088 -0.10932707337656211 FYFFGFEEF 9 Unmodified _FYFFGFEEF_ 0 0 0 REV__ENSG00000149968|ENST00000299855|MMP3 REV__ENSG00000149968|ENST00000299855|MMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5148315429688 3 411.514814 1231.52261 0.43216 0.00017784 0.05333 2.1946E-05 0.48549 0.00019978 411.5149465877245 70.313 0.26931 70.349 70.234 70.503 0.035515 27 12 3 0 0 0 0.30562 1 38714 38714 16.149 8.5402 1 4535500 + 15050 21016 10250 10453 18090 18090 -0.08388768025179161 FYFGYGSPQ 9 Unmodified _FYFGYGSPQ_ 0 0 0 REV__ENST00000271375.6_1_1:168220701-168220800:+|nuORF REV__ENST00000271375.6_1_1:168220701-168220800:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2381591796875 2 533.23745 1064.46035 0.7879 0.00042014 -0.61453 -0.00032769 0.17338 9.2451E-05 533.2370975268186 77.712 0.69667 71.536 71.185 71.882 -6.1757 50 39 2 0 0 0 0.38785 1 50868 50868 8.5933 0 1 11431000 + 15051 25138 10251 10454 18091 18091 -0.06930494373523288 FYFHYSSW 8 Unmodified _FYFHYSSW_ 0 0 0 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 nc|ENSG00000226807|Q6ZUA9|MROH5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4990539550781 3 379.499387 1135.47633 NaN NaN NaN NaN NaN NaN NaN 87.026 1 87.026 86.526 87.526 0 0 0 0 0.97444 1 48195 48195 0.40072 0 1 15052 16555 10252 10455 18092 18092 -0.08598788136600888 FYFIRKVF 8 Unmodified _FYFIRKVF_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.323486328125 2 560.32112 1118.62769 NaN NaN NaN NaN NaN NaN NaN 87.295 1 87.353 86.853 87.853 0.05822 0 0 0 0.94494 1 48526 48526 15.768 4.9443 1 + 15053 29003 10253 10456 18093 18093 0.07311817961908673 FYFQHVLTIF 10 Unmodified _FYFQHVLTIF_ 0 0 0 REV__ENST00000502953.1_1_5:54623411-54635894:+|nuORF REV__ENST00000502953.1_1_5:54623411-54635894:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2327880859375 3 438.900891 1313.68084 0.023586 1.0352E-05 3.3602 0.0014748 3.3838 0.0014852 438.9033213451888 53.836 0.38059 53.769 53.661 54.041 -0.066936 39 19 4 0 0 0 0.57893 1 29283 29283 7.4771 0 1 9121500 + 15054 28033 10254 10457 18094 18094 0.03655150953886732 FYFRCQKLW 9 Unmodified _FYFRCQKLW_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8895568847656 3 430.886588 1289.63793 NaN NaN NaN NaN NaN NaN NaN 29.696 1 29.726 29.226 30.226 0.030106 0 0 0 0.84564 1 15510 15510 1.0715 0 1 + 15055 17185 10255 10458 18095 18095 0.00470057624806941 FYFWEAALL 9 Unmodified _FYFWEAALL_ 0 0 0 nc|ENSG00000145451|O75311-2|GLRA3;ENSG00000145451|ENST00000274093|GLRA3 nc|ENSG00000145451|O75311-2|GLRA3 nc|ENSG00000145451|O75311-2|GLRA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2945556640625 2 580.294768 1158.57498 1.4053 0.00081551 -1.8177 -0.0010548 -0.4124 -0.00023931 580.2925367613279 100.56 0.20424 100.52 100.45 100.65 -0.04216 18 7 4 0 0 0 0.37804 1 55890 55890 13.508 5.5977 1 6721600 15056 5699 10256 10459 18096 18096 0.0020381510842071293 FYFYKVIEV 9 Unmodified _FYFYKVIEV_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.9198303222656 3 403.218109 1206.6325 -0.074912 -3.0206E-05 1.5815 0.00063768 1.5066 0.00060748 403.21760706419485 41.071 0.38777 41.07 40.931 41.319 -0.0017929 23 18 2 0 0 0 0.21834 1 22024 22024 0.96228 0 1 1469500 15057 1309 10257 10460 18097 18097 0.03744657313995958 FYGASAKKV 9 Unmodified _FYGASAKKV_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF;ENST00000511416.1_2_4:36211020-36212325:-|nuORF ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7716369628906 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 1.1827 1 1.1827 0.68269 1.6827 0 0 0 0 0.84737 1 575 575 1.8442 1.0506 1 15058 682 10258 10461 18098 18098 0.0423837527713431 FYGDKMNLF 9 Oxidation (M) _FYGDKM(Oxidation (M))NLF_ FYGDKM(1)NLF FYGDKM(54)NLF 0 0 1 ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6 ENSG00000119408|ENST00000320246|NEK6 ENSG00000119408|ENST00000320246|NEK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7664794921875 2 575.765517 1149.51648 1.4965 0.00086162 -0.36572 -0.00021057 1.1307 0.00065105 575.7655428513665 58.925 0.48199 52.85 52.618 53.1 -6.0745 73 26 4 0 0 0 0.032796 1 37782 37782 53.833 15.859 1 57857000 15059 3433 10259 10462 18099 18099 611 -0.05229609528373658 FYGDKMNLFSL 11 Unmodified _FYGDKMNLFSL_ 0 0 0 ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-3|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6 ENSG00000119408|ENST00000320246|NEK6 ENSG00000119408|ENST00000320246|NEK6 MSMS AL20221201_MKP_PDAC_01 4 667.826904296875 2 667.826106 1333.63766 NaN NaN NaN NaN NaN NaN NaN 98.386 1 92.21 91.71 92.71 -6.1757 0 0 0 0.15174 1 65253 65253 42.312 13.818 1 15060 3433 10260 10463 18100 18100 -0.01581406885702563 FYGDKMNLY 9 Unmodified _FYGDKMNLY_ 0 0 0 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7677612304688 2 575.765517 1149.51648 NaN NaN NaN NaN NaN NaN NaN 52.634 1 52.575 52.075 53.075 -0.058918 0 0 0 0.6032 1 28519 28519 12.532 0 1 15061 6111 10261 10464 18101 18101 -0.0522960952835092 FYGHFFRF 8 Unmodified _FYGHFFRF_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1836853027344 3 374.183622 1119.52904 0.24892 9.3141E-05 0.10805 4.043E-05 0.35697 0.00013357 374.1836267148008 61.872 0.33322 61.839 61.711 62.044 -0.032787 56 16 5 0 0 0 0.48669 2 33862 33757;33862 29.082 6.3453 1 28113000 15062 8833 10262 10465 18102;18103 18103 -0.02594785283145029 FYGHFFRF 8 Unmodified _FYGHFFRF_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1842041015625 3 374.183622 1119.52904 0.99515 0.00037237 -0.049175 -1.84E-05 0.94597 0.00035397 374.18360501209685 93.528 0.21762 87.352 87.233 87.451 -6.1757 35 13 4 0 0 0 0.40035 1 61874 61874 43.858 14.777 1 60887000 15063 8833 10262 10465 18104 18104 -0.02594785283145029 FYGHFFRF 8 Unmodified _FYGHFFRF_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.773193359375 2 560.771794 1119.52904 0.65856 0.0003693 -0.23902 -0.00013404 0.41954 0.00023527 560.7717316588873 93.51 0.22177 87.334 87.247 87.469 -6.1757 21 13 2 0 0 0 0.11943 1 61911 61911 93.883 59.781 1 18402000 15064 8833 10262 10465 18105 18105 -0.02594785283145029 FYGHNATLNN 10 Unmodified _FYGHNATLNN_ 0 0 0 REV__ENSG00000164129|ENST00000338566|NPY5R REV__ENSG00000164129|ENST00000338566|NPY5R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7674560546875 2 575.767437 1149.52032 0.49641 0.00028582 2.9755 0.0017132 3.4719 0.001999 575.7695559486264 52.858 0.33344 52.406 52.241 52.574 -0.45173 57 16 5 0 0 0 0.46514 1 28531 28531 18.146 0.011366 1 23583000 + 15065 21876 10263 10466 18106 18106 -0.04845803710281871 FYGKYTAEI 9 Unmodified _FYGKYTAEI_ 0 0 0 nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2 nc|ENSG00000117614|O95926-2|SYF2 nc|ENSG00000117614|O95926-2|SYF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2744750976562 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 44.865 1 44.843 44.343 45.343 -0.022064 0 0 0 0.10759 1 24082 24082 41.84 7.6523 1 15066 3326 10264 10467 18107 18107 -0.008133656509016873 FYGPQVNNI 9 Unmodified _FYGPQVNNI_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2637939453125 2 526.263999 1050.51345 NaN NaN NaN NaN NaN NaN NaN 54.666 1 54.2 53.7 54.7 -0.46664 0 0 0 0.086291 1 29631 29631 46.921 26.05 1 15067 2413 10265 10468 18108 18108 -0.0097911659086094 FYGPQVNNI 9 Unmodified _FYGPQVNNI_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2636108398438 2 526.263999 1050.51345 NaN NaN NaN NaN NaN NaN NaN 54.847 1 54.38 53.88 54.88 -0.46664 0 0 0 0.33856 1 29736 29736 23.148 9.6405 1 15068 2413 10265 10468 18109 18109 -0.0097911659086094 FYGRDYEYNRY 11 Unmodified _FYGRDYEYNRY_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 773.339599609375 2 773.341498 1544.66844 1.3095 0.0010127 -3.9531 -0.0030571 -2.6436 -0.0020444 773.8399316986348 101.18 0.12318 95.005 94.923 95.046 -6.1757 11 7 2 0 0 0 0.71036 1 67829 67829 3.2813 0.28607 1 20919000 15069 10507 10266 10469 18110 18110 -0.08210537247100547 FYGRHAELRF 10 Unmodified _FYGRHAELRF_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000128383|P31941-2|APOBEC3A;ENSG00000128383|ENST00000249116|APOBEC3A ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8839111328125 3 432.55964 1294.65709 0.18811 8.1368E-05 0.61401 0.0002656 0.80212 0.00034697 432.55973845326366 34.821 0.21397 34.848 34.733 34.947 0.027405 20 9 3 0 0 0 0.23366 1 18371 18371 12.228 2.4633 1 7399800 15070 8856 10267 10470 18111 18111 0.021547302400676926 FYGTFDVHL 9 Unmodified _FYGTFDVHL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7666625976562 2 549.766374 1097.5182 1.2427 0.00068318 0.56251 0.00030925 1.8052 0.00099243 549.7667028685958 71.001 0.35464 71.037 70.874 71.228 0.035515 45 15 4 0 0 0 0.013472 1 39076 39076 70.716 34.671 1 6679500 15071 1546 10268 10471 18112 18112 -0.026662324480867028 FYGTFDVHL 9 Unmodified _FYGTFDVHL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.766374 1097.5182 0.51436 0.00028278 1.0643 0.00058513 1.5787 0.00086791 549.7677034053886 71.535 0.37593 71.058 70.839 71.215 -0.47736 0.010332 0.00045415 NaN 70.716 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1128700 15072 1546 10268 10471 -0.026662324480867028 FYGVFTSQW 9 Unmodified _FYGVFTSQW_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENST00000558975.1_1_15:90764883-90766973:+|nuORF nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7672729492188 2 567.766374 1133.5182 1.2706 0.00072142 0.15976 9.0708E-05 1.4304 0.00081213 567.7659538042152 93.967 0.58347 87.791 87.585 88.168 -6.1757 58 33 2 0 0 0 0.16776 1 62325 62325 26.341 6.9023 1 8473100 15073 9321 10269 10472 18113 18113 -0.0432223244808938 FYHDAKEIF 9 Unmodified _FYHDAKEIF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5267944335938 3 390.525713 1168.55531 1.2506 0.00048838 1.8238 0.00071226 3.0744 0.0012006 390.5257958307271 47.995 0.3063 42.762 42.515 42.821 -5.2339 37 18 3 0 0 0 0.12424 1 29721 29721 28.495 18.951 1 9208100 15074 3108 10270 10473 18114 18114 -0.022225609023507786 FYHDAKEIF 9 Unmodified _FYHDAKEIF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 390.525713 1168.55531 0.157 6.1312E-05 0.51701 0.00020191 0.67401 0.00026322 390.5256539681931 42.941 0.15357 42.63 42.524 42.678 -0.31039 -0.065606 -0.00095583 NaN 28.495 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2873500 15075 3108 10270 10473 -0.022225609023507786 FYHEAVVLF 9 Unmodified _FYHEAVVLF_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.79248046875 2 562.792392 1123.57023 NaN NaN NaN NaN NaN NaN NaN 72.262 1 71.786 71.286 72.286 -0.47609 0 0 0 0.15618 1 39546 39546 36.044 16.605 1 15076 3105 10271 10474 18115 18115 0.013389309656531623 FYHEAVVLF 9 Unmodified _FYHEAVVLF_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.793212890625 2 562.792392 1123.57023 1.1688 0.00065776 1.1813 0.00066484 2.3501 0.0013226 562.7925463180517 71.612 0.52812 71.651 71.365 71.893 0.039032 89 24 5 0 0 0 0.06187 2 39406 39406;39511 42.095 16.695 1 22507000 15077 3105 10271 10474 18116;18117 18116 0.013389309656531623 FYHEAVVLF 9 Unmodified _FYHEAVVLF_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7919921875 2 562.792392 1123.57023 1.0854 0.00061086 0.41631 0.00023429 1.5017 0.00084516 562.7926421787465 91.158 0.98994 84.983 84.56 85.55 -6.1757 141 56 3 0 0 0 0.06187 5 60006 60006;60136;60360;60486;60612 42.095 16.99 1 30326000 15078 3105 10271 10474 18118;18119;18120;18121;18122 18118 0.013389309656531623 FYHEAVVLF 9 Unmodified _FYHEAVVLF_ 0 0 0 ENST00000487623.1_1_2:74718721-74719901:+|nuORF;ENST00000464241.5_1_2:74710222-74719357:+|nuORF;ENSG00000115282|ENST00000233623|TTC31 ENST00000487623.1_1_2:74718721-74719901:+|nuORF ENST00000487623.1_1_2:74718721-74719901:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 562.792392 1123.57023 0.14655 8.248E-05 0.030143 1.6964E-05 0.1767 9.9444E-05 562.7925739871167 71.85 0.12664 71.85 71.796 71.923 0 0.099768 -0.00094851 NaN 42.095 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 513440 15079 3105 10271 10474 0.013389309656531623 FYHKYFNYL 9 Unmodified _FYHKYFNYL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5482788085938 3 432.213358 1293.61824 0.59084 0.00025537 -0.08534 -3.6885E-05 0.5055 0.00021848 432.21314814485345 52.093 0.8337 52.034 51.835 52.669 -0.058918 145 40 6 0 0 0 0.30562 2 28179 28179;28284 12.241 9.1684 1 240370000 15080 6106 10272 10475 18123;18124 18123 -0.016819951142906575 FYHKYFNYL 9 Unmodified _FYHKYFNYL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.8181762695312 2 647.816399 1293.61824 0.65064 0.00042149 -0.27036 -0.00017515 0.38027 0.00024635 647.8161838013209 52.076 0.35455 52.018 51.875 52.229 -0.058918 55 16 5 0 0 0 0.016184 2 28184 28184;28285 67.344 50.231 1 43512000 15081 6106 10272 10475 18125;18126 18125 -0.016819951142906575 FYHKYFNYL 9 Unmodified _FYHKYFNYL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2135925292969 3 432.213358 1293.61824 0.20337 8.79E-05 0.93999 0.00040627 1.1434 0.00049418 432.21356212957573 85.17 0.79627 78.994 78.582 79.378 -6.1757 169 48 4 0 0 0 0.087258 4 56060 55936;56060;56187;56343 27.629 27.629 1 212920000 15082 6106 10272 10475 18127;18128;18129;18130 18128 -0.016819951142906575 FYHKYFNYL 9 Unmodified _FYHKYFNYL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8158569335938 2 647.816399 1293.61824 0.0086994 5.6356E-06 0.13642 8.8378E-05 0.14512 9.4014E-05 647.8164697156517 85.184 0.72701 79.008 78.618 79.345 -6.1757 124 44 3 0 0 0 0.0067112 3 56264 55998;56128;56264 112.59 74.418 1 134990000 15083 6106 10272 10475 18131;18132;18133 18133 -0.016819951142906575 FYHNADLVSWA 11 Unmodified _FYHNADLVSWA_ 0 0 0 ENSG00000165555|ENST00000380835|NOXRED1;nc|ENSG00000165555|Q6NXP6-2|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3148803710938 2 661.811845 1321.60914 0.48766 0.00032274 1.6556 0.0010957 2.1433 0.0014184 661.8128036464292 76.286 0.28476 76.334 76.182 76.467 0.047943 26 11 3 0 0 0 0.6249 1 42090 42090 10.074 0.72649 1 5592300 15084 7360 10273 10476 18134 18134 -0.038803884706339886 FYHPRDDTRA 10 Unmodified _FYHPRDDTRA_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5390625 3 426.538904 1276.59488 0.47816 0.00020395 1.2205 0.00052057 1.6986 0.00072453 426.5396693881873 52.075 0.23082 52.016 51.917 52.148 -0.058918 17 10 2 0 0 0 0.68719 1 28219 28219 2.086 0.75636 1 4914200 + 15085 21505 10274 10477 18135 18135 -0.03235040898925945 FYIDHNSKI 9 Unmodified _FYIDHNSKI_ 0 0 0 nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L nc|ENSG00000049759|Q96PU5-9|NEDD4L nc|ENSG00000049759|Q96PU5-9|NEDD4L MSMS AL20221201_MKP_PDAC_01 4 379.5297546386719 3 379.529346 1135.56621 NaN NaN NaN NaN NaN NaN NaN 39.174 1 34.723 34.223 35.223 -4.4509 0 0 0 0.45218 1 23218 23218 17.443 12.146 1 15086 714 10275 10478 18136 18136 0.003848414719413995 FYIDKDMIHI 10 Unmodified _FYIDKDMIHI_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.222412109375 3 432.221525 1293.64274 1.3093 0.00056591 -2.2666 -0.00097967 -0.9573 -0.00041377 432.2216242175583 86.704 0.68284 80.528 80.247 80.93 -6.1757 92 36 4 0 0 0 0.20771 2 57123 57123;57274 32.898 21.999 1 17210000 15087 1759 10276 10479 18137;18138 18137 0.00766896976915632 FYIDRGRQLF 10 Unmodified _FYIDRGRQLF_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2377319335938 3 438.903295 1313.68806 0.023586 1.0352E-05 -2.1161 -0.00092875 -2.0925 -0.00091839 438.9033213451888 53.836 0.38059 53.769 53.661 54.041 -0.066936 39 19 4 0 0 0 0.19566 1 29208 29208 34.222 14.596 1 9121500 15088 5077 10277 10480 18139 18139 0.0437588355432581 FYIEKLRSL 9 Unmodified _FYIEKLRSL_ 0 0 0 REV__ENST00000493413.1_1_1:185934944-185947193:+|nuORF REV__ENST00000493413.1_1_1:185934944-185947193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2300109863281 3 390.229008 1167.66519 0.198 7.7267E-05 0.96688 0.00037731 1.1649 0.00045457 390.2291999663703 48.624 0.27646 48.58 48.495 48.772 -0.04369 25 13 3 0 0 0 0.43515 1 26251 26251 7.4771 1.2852 1 1315400 + 15089 27919 10278 10481 18140 18140 0.08806864436837714 FYIERKGNSL 10 Unmodified _FYIERKGNSL_ 0 0 0 REV__nc|ENSG00000179873|P59045-3|NLRP11 REV__nc|ENSG00000179873|P59045-3|NLRP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5563354492188 3 409.555784 1225.64552 0.69287 0.00028377 0.59764 0.00024477 1.2905 0.00052853 409.5561775200043 42.638 0.17568 42.638 42.524 42.7 0 14 8 2 0 0 0 0.69385 1 23126 23126 3.5871 0 1 1618800 + 15090 23123 10279 10482 18141 18141 0.041724884260929684 FYIGWGHKY 9 Unmodified _FYIGWGHKY_ 0 0 0 ENSG00000111834|ENST00000229554|RSPH4A;nc|ENSG00000111834|Q5TD94-2|RSPH4A ENSG00000111834|ENST00000229554|RSPH4A ENSG00000111834|ENST00000229554|RSPH4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1967163085938 3 390.862548 1169.56581 0.20218 7.9026E-05 -0.31059 -0.0001214 -0.10841 -4.2372E-05 390.8625019230391 31.442 0.90447 31.339 31.013 31.918 -0.10269 96 36 3 0 0 0 0.55144 1 16207 16207 2.4985 0 1 12268000 15091 2833 10280 10483 18142 18142 -0.012185334572450301 FYIHEVQEL 9 Unmodified _FYIHEVQEL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.297607421875 2 589.298039 1176.58152 -0.017128 -1.0093E-05 0.29479 0.00017372 0.27766 0.00016363 589.2981021388356 56.578 0.55972 56.578 56.341 56.9 0 51 24 4 0 0 0 0.10734 1 31525 31525 32.305 9.5692 1 18570000 15092 5949 10281 10484 18143 18143 0.00029708269130424014 FYIHEVQEL 9 Unmodified _FYIHEVQEL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2982177734375 2 589.298039 1176.58152 0.34213 0.00020162 -0.27144 -0.00015996 0.070695 4.166E-05 589.2976565167978 57.122 0.65862 56.637 56.329 56.988 -0.48554 70 30 4 0 0 0 0.022193 1 31068 31068 61.357 32.276 1 30492000 15093 5949 10281 10484 18144 18144 0.00029708269130424014 FYIHEVQEL 9 Unmodified _FYIHEVQEL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2982177734375 2 589.298039 1176.58152 0.57321 0.00033779 -0.29683 -0.00017492 0.27638 0.00016287 589.2977043304707 56.773 0.25817 56.705 56.598 56.857 -0.068741 20 12 2 0 0 0 0.2143 1 30891 30891 21.747 10.106 1 2750700 15094 5949 10281 10484 18145 18145 0.00029708269130424014 FYIHEVQEL 9 Unmodified _FYIHEVQEL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.299072265625 2 589.298039 1176.58152 1.6376 0.00096506 0.60324 0.00035549 2.2409 0.0013205 589.2981701225834 62.929 0.34133 56.753 56.461 56.803 -6.1757 32 16 2 0 0 0 0.022193 1 40605 40605 61.357 21.4 1 67997000 15095 5949 10281 10484 18146 18146 0.00029708269130424014 FYIHEVQEL 9 Unmodified _FYIHEVQEL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MSMS AL20221201_MKP_PDAC_01 4 589.3008422851562 2 589.298039 1176.58152 NaN NaN NaN NaN NaN NaN NaN 63.414 1 57.238 56.738 57.738 -6.1757 0 0 0 0.12343 1 40991 40991 39.95 5.548 1 15096 5949 10281 10484 18147 18147 0.00029708269130424014 FYIHHPVHL 9 Unmodified _FYIHHPVHL_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2108459472656 3 388.210059 1161.60835 -0.17275 -6.7062E-05 3.1842 0.0012361 3.0115 0.0011691 388.2112462087285 35.647 0.184 35.672 35.602 35.786 0.024967 18 8 3 0 0 0 0.1492 1 18895 18895 32.305 22.922 1 9111100 15097 3194 10282 10485 18148 18148 0.034008616709797934 FYIHHPVHL 9 Unmodified _FYIHHPVHL_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2109069824219 3 388.210059 1161.60835 1.1437 0.000444 -0.39968 -0.00015516 0.74403 0.00028884 388.20984130266993 76.101 0.42329 69.925 69.652 70.076 -6.1757 25 22 2 0 0 0 0.085487 1 49678 49678 25.399 13.159 1 10398000 15098 3194 10282 10485 18149 18149 0.034008616709797934 FYILTSKEL 9 Unmodified _FYILTSKEL_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3132934570312 2 557.313158 1112.61176 1.0941 0.00060977 0.63556 0.00035421 1.7297 0.00096398 557.3133131252101 64.396 0.31545 64.386 64.232 64.548 -0.010529 37 15 3 0 0 0 0.029718 1 35227 35227 55.503 9.4818 1 15721000 15099 1323 10283 10486 18150 18150 0.05996066934335431 FYINSGTLQF 10 Unmodified _FYINSGTLQF_ 0 0 0 nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF nc|ENSG00000118900|Q9NPG3-2|UBN1 nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2985229492188 2 595.298039 1188.58152 1.3923 0.00082884 -0.84138 -0.00050087 0.55093 0.00032797 595.2972941664325 82.192 0.38792 82.254 82.033 82.421 0.061996 40 15 3 0 0 0 0.11755 2 45515 45397;45515 43.858 26.745 1 38857000 15100 3400 10284 10487 18151;18152 18152 -0.00522291730840152 FYINSGTLQF 10 Unmodified _FYINSGTLQF_ 0 0 0 nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF nc|ENSG00000118900|Q9NPG3-2|UBN1 nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2996215820312 2 595.298039 1188.58152 0.63375 0.00037727 1.0479 0.00062382 1.6817 0.0010011 595.2989092534289 90.498 0.86684 84.323 83.793 84.659 -6.1757 143 50 4 0 0 0 0.60623 1 59837 59837 10.824 2.9138 1 99800000 15101 3400 10284 10487 18153 18153 -0.00522291730840152 FYINSGTLQF 10 Unmodified _FYINSGTLQF_ 0 0 0 nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1;ENST00000587027.1_1_16:4909049-4918847:+|nuORF nc|ENSG00000118900|Q9NPG3-2|UBN1 nc|ENSG00000118900|Q9NPG3-2|UBN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.298039 1188.58152 0.65623 0.00039065 -1.1187 -0.00066593 -0.46242 -0.00027528 595.2972263087813 82.743 0.2802 82.246 82.077 82.357 -0.49751 -0.0038742 -0.0002761 NaN 43.858 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1185000 15102 3400 10284 10487 -0.00522291730840152 FYINTGTLQF 10 Unmodified _FYINTGTLQF_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2 ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3058471679688 2 602.305864 1202.59717 -0.42324 -0.00025492 0.87869 0.00052924 0.45545 0.00027432 602.3066502488485 86.385 0.11462 86.443 86.404 86.518 0.05822 11 6 2 0 0 0 0.035736 1 47968 47968 65.235 41.214 1 27018000 15103 6536 10285 10488 18154 18154 0.0039799478618078865 FYIPEGCIQRW 11 Carbamidomethyl (C) _FYIPEGC(Carbamidomethyl (C))IQRW_ FYIPEGC(1)IQRW FYIPEGC(57)IQRW 0 1 0 ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1;ENST00000491616.1_1_1:213415441-213415690:+|nuORF ENSG00000136643|ENST00000366960|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 734.8573608398438 2 734.855729 1467.69691 0.44424 0.00032646 0.93448 0.00068671 1.3787 0.0010132 734.8562280174482 82.581 0.16684 76.405 76.323 76.49 -6.1757 14 9 2 0 0 0 0.020698 1 54293 54293 57.249 30.981 1 5180800 15104 4841 10286 10489 18155 18155 495 -0.018235108715316528 FYIPHVPVSF 10 Unmodified _FYIPHVPVSF_ 0 0 0 nc|ENSG00000120341|Q96JE7-2|SEC16B;ENSG00000120341|ENST00000308284|SEC16B;ENST00000466953.6_1_1:177929778-177937161:-|nuORF nc|ENSG00000120341|Q96JE7-2|SEC16B nc|ENSG00000120341|Q96JE7-2|SEC16B MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.321044921875 2 603.321317 1204.62808 0.18073 0.00010904 -0.030221 -1.8233E-05 0.15051 9.0807E-05 603.3213657853396 98.59 0.13957 92.414 92.338 92.478 -6.1757 14 10 2 0 0 0 0.0012033 2 65429 65412;65429 112.59 84.106 1 22601000 15105 3513 10287 10490 18156;18157 18157 0.033951928910710194 FYIPPLATHTI 11 Unmodified _FYIPPLATHTI_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.85302734375 2 636.852981 1271.69141 0.38087 0.00024256 0.22568 0.00014373 0.60655 0.00038628 636.8529847933614 78.618 0.49361 78.67 78.466 78.959 0.052444 53 19 4 0 0 0 8.391E-09 2 43463 43356;43463 111.29 67.515 1 10239000 15106 3295 10288 10491 18158;18159 18159 0.06643133608326934 FYIPPLATHTI 11 Unmodified _FYIPPLATHTI_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.853759765625 2 636.852981 1271.69141 0.0024877 1.5843E-06 0.52063 0.00033157 0.52312 0.00033315 636.8534799042709 93.357 0.75069 87.181 86.77 87.521 -6.1757 84 51 2 0 0 0 0.00047726 2 61804 61804;61937 88.954 52.827 1 31068000 15107 3295 10288 10491 18160;18161 18160 0.06643133608326934 FYIPPLATHTI 11 Unmodified _FYIPPLATHTI_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MSMS AL20221201_MKP_PDAC_01 4 636.8514404296875 2 636.852981 1271.69141 NaN NaN NaN NaN NaN NaN NaN 93.023 1 86.847 86.347 87.347 -6.1757 0 0 0 0.057868 1 61542 61542 60.074 37.338 1 15108 3295 10288 10491 18162 18162 0.06643133608326934 FYIPPLATHTI 11 Unmodified _FYIPPLATHTI_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;ENST00000469535.5_1_1:207925470-207933074:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MSMS AL20221201_MKP_PDAC_01 4 636.8536376953125 2 636.852981 1271.69141 NaN NaN NaN NaN NaN NaN NaN 93.199 1 87.023 86.523 87.523 -6.1757 0 0 0 1.4616E-09 1 61676 61676 111.29 75.16 1 15109 3295 10288 10491 18163 18163 0.06643133608326934 FYIRRVHNL 9 Unmodified _FYIRRVHNL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5685729980469 3 406.568247 1216.68291 -0.32747 -0.00013314 0.70247 0.0002856 0.37501 0.00015247 406.56859982454193 30.507 0.32349 30.537 30.413 30.737 0.030104 34 14 3 0 0 0 0.1685 1 15929 15929 26.268 12.05 1 7035000 15110 6396 10289 10492 18164 18164 0.08323624482363812 FYIRRVHNL 9 Unmodified _FYIRRVHNL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.568359375 3 406.568247 1216.68291 1.0457 0.00042515 -0.15787 -6.4183E-05 0.88784 0.00036097 406.56822388318795 34.781 0.25241 30.686 30.565 30.817 -4.0951 22 14 2 0 0 0 0.11784 1 20132 20132 31.268 20.953 1 6313600 15111 6396 10289 10492 18165 18165 0.08323624482363812 FYIRSVNVSF 10 Unmodified _FYIRSVNVSF_ 0 0 0 REV__ENST00000440928.5_1_1:240938871-240938988:-|nuORF REV__ENST00000440928.5_1_1:240938871-240938988:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2208251953125 3 411.220513 1230.63971 -0.066302 -2.7265E-05 -0.62866 -0.00025852 -0.69496 -0.00028578 411.2202893395587 38.536 0.25151 38.553 38.394 38.645 0.01704 35 11 4 0 0 0 0.20195 1 20464 20464 33.445 3.6043 1 15239000 + 15112 27084 10290 10493 18166 18166 0.03361389914402935 FYIRTHFEL 9 Unmodified _FYIRTHFEL_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2169494628906 3 409.216991 1224.62914 0.063952 2.617E-05 0.31464 0.00012876 0.37859 0.00015493 409.21707861922897 61.188 0.43699 61.145 60.967 61.404 -0.04351 51 21 3 0 0 0 0.07087 2 33337 33337;33438 37.075 22.669 1 35897000 15113 2300 10291 10494 18167;18168 18167 0.025814072600041982 FYIRTHFEL 9 Unmodified _FYIRTHFEL_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2174377441406 3 409.216991 1224.62914 1.3214 0.00054075 0.61992 0.00025368 1.9413 0.00079443 409.21747610484834 89.315 0.97722 83.139 82.779 83.756 -6.1757 104 54 3 0 0 0 0.25681 2 58934 58803;58934 36.506 28.897 1 64880000 15114 2300 10291 10494 18169;18170 18170 0.025814072600041982 FYIRTHFEL 9 Unmodified _FYIRTHFEL_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3231201171875 2 613.321848 1224.62914 1.0936 0.00067076 -0.64362 -0.00039474 0.45003 0.00027601 613.3219388026586 89.247 0.67342 83.071 82.599 83.273 -6.1757 67 37 3 0 0 0 0.00044362 2 58903 58903;59044 145.13 116.05 1 15240000 15115 2300 10291 10494 18171;18172 18171 0.025814072600041982 FYIRTHFEY 9 Unmodified _FYIRTHFEY_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.8770446777344 3 425.876746 1274.60841 -0.077181 -3.287E-05 0.80088 0.00034108 0.7237 0.00030821 425.87695991428376 51.24 0.23909 51.186 51.067 51.306 -0.053875 27 11 3 0 0 0 0.51218 1 27734 27734 7.1017 5.3594 1 5589900 15116 2175 10292 10495 18173 18173 -0.01791183119667039 FYISCFCCHF 10 Unmodified _FYISCFCCHF_ 0 0 0 REV__ENST00000545606.5_1_12:67706733-67706835:+|nuORF REV__ENST00000545606.5_1_12:67706733-67706835:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8349304199219 3 423.834507 1268.48169 0.26764 0.00011344 0.28114 0.00011916 0.54878 0.00023259 423.8348263367688 25.949 0.4258 22.998 22.804 23.23 -2.9511 93 27 4 0 0 0 0.7191 1 14389 14389 0.77653 0.078866 1 84084000 + 15117 28651 10293 10496 18174 18174 -0.1418089193234664 FYISPVNKL 9 Unmodified _FYISPVNKL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.75341796875 2 540.808042 1079.60153 0.045397 2.4551E-05 0.50438 0.00027277 0.54977 0.00029732 540.8078690474823 59.92 0.2728 59.429 59.293 59.566 -0.49079 23 13 2 0 0 0 0.19496 1 32668 32668 13.906 5.9959 1 4261900 15118 2363 10294 10497 18175 18175 0.06491503999745873 FYISPVNKL 9 Unmodified _FYISPVNKL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8079833984375 2 540.808042 1079.60153 0.28127 0.00015212 0.068033 3.6793E-05 0.34931 0.00018891 540.8079923215192 59.595 0.48977 59.542 59.346 59.836 -0.053059 72 24 5 0 0 0 0.0082485 2 32513 32412;32513 96.285 52.426 1 164170000 15119 2363 10294 10497 18176;18177 18177 0.06491503999745873 FYISPVNKL 9 Unmodified _FYISPVNKL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8084716796875 2 540.808042 1079.60153 0.37101 0.00020065 0.9785 0.00052918 1.3495 0.00072983 540.8086016770468 65.207 0.66163 59.031 58.752 59.414 -6.1757 117 36 4 0 0 0 0.0082661 3 42325 42190;42325;42444 92.491 52.534 1 229790000 15120 2363 10294 10497 18178;18179;18180 18179 0.06491503999745873 FYISPVNKL 9 Unmodified _FYISPVNKL_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.809326171875 2 540.808042 1079.60153 0.34001 0.00018388 -0.61213 -0.00033105 -0.27212 -0.00014717 540.8076028569798 65.886 0.64554 59.71 59.382 60.027 -6.1757 91 38 3 0 0 0 0.024882 2 42630 42630;42767 58.679 35.943 1 52745000 15121 2363 10294 10497 18181;18182 18181 0.06491503999745873 FYISSEHEL 9 Unmodified _FYISSEHEL_ 0 0 0 ENST00000559471.5_1_15:49282358-49282517:-|nuORF ENST00000559471.5_1_15:49282358-49282517:-|nuORF ENST00000559471.5_1_15:49282358-49282517:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.76806640625 2 562.766571 1123.51859 0.59272 0.00033357 0.84445 0.00047523 1.4372 0.00080879 562.7674019380431 92.565 0.24829 92.084 92.012 92.26 -0.48093 17 11 3 0 0 0 0.41742 1 50600 50600 11.64 0 1 509010 15122 15296 10295 10498 18183 18183 -0.03822857518912315 FYITSRTQF 9 Unmodified _FYITSRTQF_ 0 0 0 ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC ENSG00000197122|ENST00000373578|SRC ENSG00000197122|ENST00000373578|SRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7979736328125 2 581.798206 1161.58186 0.54785 0.00031874 -0.36558 -0.00021269 0.18227 0.00010604 581.7980360890583 52.197 0.18054 51.763 51.649 51.83 -0.43367 15 8 2 0 0 0 0.07087 1 28177 28177 39.95 9.7249 1 1930900 15123 9911 10296 10499 18184 18184 0.007531279889917641 FYITSRTQF 9 Unmodified _FYITSRTQF_ 0 0 0 ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC ENSG00000197122|ENST00000373578|SRC ENSG00000197122|ENST00000373578|SRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7986450195312 2 581.798206 1161.58186 0.68271 0.0003972 0.011368 6.614E-06 0.69407 0.00040381 581.7981656413027 51.881 0.4754 51.822 51.592 52.067 -0.058918 80 22 5 0 0 0 0.0081887 2 28009 28009;28108 93.166 53.209 1 157240000 15124 9911 10296 10499 18185;18186 18185 0.007531279889917641 FYITSRTQF 9 Unmodified _FYITSRTQF_ 0 0 0 ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC ENSG00000197122|ENST00000373578|SRC ENSG00000197122|ENST00000373578|SRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.79833984375 2 581.798206 1161.58186 0.93352 0.00054312 0.026015 1.5135E-05 0.95954 0.00055826 581.7980962112869 57.664 0.55023 51.636 51.372 51.923 -6.0275 93 30 4 0 0 0 0.0033077 3 36758 36758;36884;37037 125.04 76.692 1 535570000 15125 9911 10296 10499 18187;18188;18189 18187 0.007531279889917641 FYITSTFF 8 Unmodified _FYITSTFF_ 0 0 0 REV__nc|ENSG00000102384|Q92674-2|CENPI REV__nc|ENSG00000102384|Q92674-2|CENPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2521362304688 2 513.252569 1024.49058 0.55782 0.0002863 0.24363 0.00012504 0.80145 0.00041135 513.2525156779499 82.135 0.34795 81.639 81.471 81.819 -0.4952 23 13 2 0 0 0 0.80232 1 44955 44955 5.2307 0 1 893550 + 15126 18237 10297 10500 18190 18190 -0.020681357083276453 FYIYIFCCRF 10 Unmodified _FYIYIFCCRF_ 0 0 0 ENST00000302517.7_1_5:139062526-139062679:+|nuORF ENST00000302517.7_1_5:139062526-139062679:+|nuORF ENST00000302517.7_1_5:139062526-139062679:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 688.3252563476562 2 687.822312 1373.63007 0.56754 0.00039037 -0.90513 -0.00062257 -0.33759 -0.0002322 688.3236429957177 48.111 0.17679 48.072 48.007 48.184 -0.038647 18 8 3 0 0 0 0.63089 1 25961 25961 10.824 1.4408 1 2073400 15127 11585 10298 10501 18191 18191 -0.041798376869792264 FYKLTTTGYPA 11 Unmodified _FYKLTTTGYPA_ 0 0 0 REV__ENSG00000173557|ENST00000329615|FAM166C REV__ENSG00000173557|ENST00000329615|FAM166C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5501708984375 3 421.22029 1260.63904 1.3352 0.00056242 -0.95869 -0.00040382 0.37652 0.0001586 421.22076648021374 50.282 0.56806 50.233 49.784 50.352 -0.048824 47 27 3 0 0 0 0.71503 1 27123 27123 2.8433 1.101 1 6991800 + 15128 22736 10299 10502 18192 18192 0.019145504747029918 FYKPWIYQ 8 Unmodified _FYKPWIYQ_ 0 0 0 ENST00000380738.8_1_9:15465053-15465170:-|nuORF ENST00000380738.8_1_9:15465053-15465170:-|nuORF ENST00000380738.8_1_9:15465053-15465170:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7964477539062 2 572.794935 1143.57532 0.059058 3.3828E-05 0.98634 0.00056497 1.0454 0.0005988 572.7953040898079 51.731 0.26085 51.672 51.553 51.814 -0.058914 33 12 3 0 0 0 0.79669 1 28081 28081 8.5933 3.8373 1 7254500 15129 12604 10300 10503 18193 18193 0.009272348282593157 FYKSGKFVF 9 Unmodified _FYKSGKFVF_ 0 0 0 ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENST00000599829.1_1_19:59068052-59068363:-|nuORF ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8713989257812 3 374.870932 1121.59097 0.54428 0.00020404 0.024202 9.0727E-06 0.56849 0.00021311 374.8709626033581 47.6 0.20553 47.561 47.435 47.64 -0.038647 16 9 2 0 0 0 0.28023 1 25636 25636 22.658 12.584 1 4392900 15130 4248 10301 10504 18194 18194 0.035035213453284086 FYKSGLLRY 9 Unmodified _FYKSGLLRY_ 0 0 0 L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|70|1|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|70|1|anti-sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|70|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3214721679688 2 573.818941 1145.62333 1.994 0.0011442 0.76642 0.00043978 2.7605 0.001584 573.8194975208746 94.196 0.67973 94.21 93.861 94.54 0.014244 44 25 2 0 0 0 0.34999 2 52288 52288;52402 14.838 2.2185 1 1709200 15131 15954 10302 10505 18195;18196 18195 0.0563430874833557 FYKVEKPF 8 Unmodified _FYKVEKPF_ 0 0 0 REV__ENST00000531529.1_1_1:163310137-163313527:+|nuORF REV__ENST00000531529.1_1_1:163310137-163313527:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2894897460938 2 529.289485 1056.56442 0.18026 9.5412E-05 0.36563 0.00019352 0.54589 0.00028894 529.2885667771446 55.149 0.29925 55.08 54.919 55.218 -0.068741 24 14 3 0 0 0 0.55032 1 29965 29965 30.225 3.3412 1 2548700 + 15132 28448 10303 10506 18197 18197 0.03839832453991221 FYKVEKPF 8 Unmodified _FYKVEKPF_ 0 0 0 REV__ENST00000531529.1_1_1:163310137-163313527:+|nuORF REV__ENST00000531529.1_1_1:163310137-163313527:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 529.289485 1056.56442 0.29652 0.00015694 -2.7781 -0.0014704 -2.4816 -0.0013135 529.2884581049884 55.62 0.18944 55.142 55.048 55.238 -0.47798 0.03105 -0.0011653 NaN 30.225 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 824260 + 15133 28448 10303 10506 0.03839832453991221 FYLCFLFT 8 Unmodified _FYLCFLFT_ 0 0 0 REV__ENST00000482975.6_2_2:70519928-70519991:-|nuORF REV__ENST00000482975.6_2_2:70519928-70519991:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2571411132812 2 527.259339 1052.50413 NaN NaN NaN NaN NaN NaN NaN 92.348 1 92.348 91.848 92.848 0 0 0 0 0.97444 1 51064 51064 0.79363 0.10326 1 + 15134 27731 10304 10507 18198 18198 -0.020026012007519967 FYLDRVRSL 9 Unmodified _FYLDRVRSL_ 0 0 0 ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENST00000453838.2_1_1:182929095-182929497:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2213134765625 3 390.220624 1167.64004 1.1453 0.00044694 1.7279 0.00067424 2.8732 0.0011212 390.2213256565431 50.34 0.34548 50.292 50.169 50.515 -0.048824 35 16 3 0 0 0 0.2289 1 27222 27222 20.581 9.7814 1 2192000 15135 13562 10305 10508 18199 18199 0.06292809634283003 FYLEGGFSKF 10 Unmodified _FYLEGGFSKF_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7954711914062 2 597.795132 1193.57571 0.47351 0.00028306 0.26503 0.00015843 0.73854 0.00044149 597.795195034341 70.912 0.40868 70.435 70.202 70.611 -0.47735 56 18 4 0 0 0 0.035244 2 38865 38753;38865 65.474 46.217 1 26328000 15136 5145 10306 10509 18200;18201 18201 -0.013333902425074484 FYLEGGFSKF 10 Unmodified _FYLEGGFSKF_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.7952880859375 2 597.795132 1193.57571 0.49047 0.0002932 -0.30397 -0.00018171 0.1865 0.00011149 597.794877346194 70.33 0.63228 70.365 70.153 70.785 0.035507 128 29 7 0 0 0 0.021614 3 38641 38641;38750;38859 74.2 48.8 1 387750000 15137 5145 10306 10509 18202;18203;18204 18202 -0.013333902425074484 FYLEGGFSKF 10 Unmodified _FYLEGGFSKF_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7958984375 2 597.795132 1193.57571 0.039987 2.3904E-05 1.2583 0.00075219 1.2983 0.00077609 597.795974133603 82.609 1.4574 76.433 75.712 77.17 -6.1757 274 81 4 0 0 0 0.06987 4 54190 54190;54320;54460;54596 53.404 35.269 1 285030000 15138 5145 10306 10509 18205;18206;18207;18208 18205 -0.013333902425074484 FYLEHNAHL 9 Unmodified _FYLEHNAHL_ 0 0 0 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8576965332031 3 381.857574 1142.55089 0.45761 0.00017474 0.67564 0.000258 1.1333 0.00043274 381.8577204442308 40.32 0.21024 40.023 39.903 40.114 -0.29716 24 9 3 0 0 0 0.1773 1 21291 21291 29.841 16.968 1 3247100 15139 4925 10307 10510 18209 18209 -0.01468025325243616 FYLEHNAHL 9 Unmodified _FYLEHNAHL_ 0 0 0 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5360412597656 3 381.857574 1142.55089 1.0305 0.0003935 -1.1932 -0.00045562 -0.16266 -6.2114E-05 381.8570996448089 44.697 0.32085 39.845 39.701 40.021 -4.852 35 26 2 0 0 0 0.15363 1 27378 27378 23.79 15.88 1 11290000 15140 4925 10307 10510 18210 18210 -0.01468025325243616 FYLEHNAHL 9 Unmodified _FYLEHNAHL_ 0 0 0 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 ENSG00000137338|ENST00000682144|PGBD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.857574 1142.55089 0.0021398 8.1708E-07 0.65816 0.00025132 0.6603 0.00025214 382.1920127688934 39.941 0.097855 39.941 39.912 40.01 0 0.0044208 0.00055036 NaN 23.79 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 977680 15141 4925 10307 10510 -0.01468025325243616 FYLEQQRRS 9 Unmodified _FYLEQQRRS_ 0 0 0 REV__ENSG00000154162|ENST00000382254|CDH12 REV__ENSG00000154162|ENST00000382254|CDH12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8836975097656 3 409.5474 1225.62037 0.37951 0.00015543 0.2938 0.00012033 0.67332 0.00027575 409.5472917312327 24.213 0.27257 21.385 21.196 21.469 -2.8273 24 14 2 0 0 0 0.43463 1 13139 13139 7.1017 0 1 3499500 + 15142 21211 10308 10511 18211 18211 0.01658433623538258 FYLFPDGRNQN 11 Unmodified _FYLFPDGRNQN_ 0 0 0 ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.556396484375 3 457.554443 1369.6415 NaN NaN NaN NaN NaN NaN NaN 28.243 1 28.272 27.772 28.772 0.029564 0 0 0 0.94307 1 14698 14698 0.08335 0 1 15143 2716 10309 10512 18212 18212 -0.028536010676134538 FYLHHVMSK 9 Unmodified _FYLHHVMSK_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8663940429688 3 387.867305 1160.58008 -0.1599 -6.2019E-05 -1.9508 -0.00075665 -2.1107 -0.00081866 387.8665147141764 54.123 0.31905 54.056 53.863 54.182 -0.066936 33 15 3 0 0 0 0.2001 1 29342 29342 16.149 0 1 4037300 + 15144 19051 10310 10513 18213 18213 0.006217956993850748 FYLHKFAEQN 10 Unmodified _FYLHKFAEQN_ 0 0 0 REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3 REV__nc|ENSG00000111058|Q9H6R3-2|ACSS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8851623535156 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 70.943 1 70.978 70.478 71.478 0.035515 0 0 0 0.98857 1 39054 39054 1.9064 0.1641 1 + 15145 18733 10311 10514 18214 18214 -0.006117980909493781 FYLISPSEF 9 Unmodified _FYLISPSEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;ENST00000479155.1_1_17:18144816-18146132:+|nuORF;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.777587890625 2 551.776408 1101.53826 1.3554 0.00074788 1.5385 0.0008489 2.8939 0.0015968 551.7774609445148 92.082 0.37253 92.112 91.886 92.259 0.030197 30 13 3 0 0 0 0.06294 1 51245 51245 56.541 9.6204 1 7021400 15146 1104;4358 10312 10515 18215 18215 -0.008444815081475099 FYLISPSEF 9 Unmodified _FYLISPSEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;ENST00000479155.1_1_17:18144816-18146132:+|nuORF;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7791137695312 2 551.776408 1101.53826 0.41301 0.00022789 0.60228 0.00033232 1.0153 0.00056021 551.7763792735417 99.686 0.19354 93.511 93.38 93.574 -6.1757 32 11 4 0 0 0 0.028475 1 66427 66427 74.396 27.475 1 140190000 15147 1104;4358 10312 10515 18216 18216 -0.008444815081475099 FYLKALDGF 9 Unmodified _FYLKALDGF_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2875366210938 2 537.286943 1072.55933 0.13099 7.038E-05 0.164 8.8113E-05 0.29499 0.00015849 537.2872912488759 76.854 0.42349 76.904 76.75 77.173 0.050102 41 17 4 0 0 0 0.010611 1 42427 42427 78.728 26.46 1 5312000 15148 1860 10313 10516 18217 18217 0.0259552859138239 FYLKALDGF 9 Unmodified _FYLKALDGF_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2903442382812 2 537.286943 1072.55933 1.2129 0.00065167 -1.6688 -0.00089663 -0.45593 -0.00024496 537.2875325578389 95.527 0.28257 89.351 89.213 89.496 -6.1757 36 16 3 0 0 0 0.032796 1 63247 63247 53.833 17.706 1 23930000 15149 1860 10313 10516 18218 18218 0.0259552859138239 FYLKKLTLF 9 Unmodified _FYLKKLTLF_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4;nc|ENSG00000167608|Q7Z404-3|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5747375488281 3 391.574116 1171.70052 1.5279 0.0005983 0.11441 4.4799E-05 1.6423 0.00064309 391.57402452580635 97.124 0.27342 90.949 90.807 91.08 -6.1757 31 15 3 0 0 0 0.060956 1 64343 64343 42.312 30.072 1 37432000 15150 7636 10314 10517 18219 18219 0.12153526964652883 FYLKLVKKETF 11 Unmodified _FYLKLVKKETF_ 0 0 0 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 ENSG00000139209|ENST00000266579|SLC38A4 MSMS AL20221201_MKP_PDAC_01 4 472.6184387207031 3 472.614751 1414.82242 NaN NaN NaN NaN NaN NaN NaN 109.82 1 103.65 103.15 104.15 -6.1757 0 0 0 0.94165 1 73322 73322 0.45452 0.046251 1 15151 5137 10315 10518 18220 18220 0.13160524256340977 FYLKQVPL 8 Unmodified _FYLKQVPL_ 0 0 0 REV__ENST00000217939.6_1_X:3239872-3239923:-|nuORF REV__ENST00000217939.6_1_X:3239872-3239923:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2985534667969 2 504.299853 1006.58515 0.75241 0.00037944 -1.9164 -0.00096644 -1.164 -0.000587 504.2992303228444 59.69 0.77666 59.69 59.423 60.199 0 81 35 3 0 0 0 0.50586 1 33293 33293 34.187 0.084896 1 18820000 + 15152 24750 10316 10519 18221 18221 0.08212422833662458 FYLKQVPL 8 Unmodified _FYLKQVPL_ 0 0 0 REV__ENST00000217939.6_1_X:3239872-3239923:-|nuORF REV__ENST00000217939.6_1_X:3239872-3239923:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 504.299853 1006.58515 0.51472 0.00025957 -5.1407 -0.0025924 -4.6259 -0.0023329 504.29753392418854 65.81 0.21698 59.635 59.541 59.758 -6.1757 -0.027526 -0.0029822 NaN 34.187 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 24067000 + 15153 24750 10316 10519 0.08212422833662458 FYLLISKTF 9 Unmodified _FYLLISKTF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3269653320312 2 566.326068 1130.63758 1.3299 0.00075317 1.1176 0.00063295 2.4476 0.0013861 566.326681514887 82.539 0.44566 82.601 82.449 82.894 0.062004 37 16 3 0 0 0 0.08907 1 45715 45715 45.7 26.443 1 3614000 15154 2534 10317 10520 18222 18222 0.07748961176616831 FYLLISKTF 9 Unmodified _FYLLISKTF_ 0 0 0 nc|ENSG00000107949|Q9P287-3|BCCIP;ENSG00000107949|ENST00000278100|BCCIP;nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP nc|ENSG00000107949|Q9P287-3|BCCIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3272094726562 2 566.326068 1130.63758 1.3488 0.00076388 1.0682 0.00060493 2.417 0.0013688 566.3265473646497 97.934 0.14906 91.758 91.668 91.817 -6.1757 13 8 2 0 0 0 0.040733 1 64912 64912 62.573 30.267 1 12826000 15155 2534 10317 10520 18223 18223 0.07748961176616831 FYLLLGNLL 9 Unmodified _FYLLLGNLL_ 0 0 0 ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000480641.1_1_13:98628950-98634326:+|nuORF ENSG00000065150|ENST00000651721|IPO5 ENSG00000065150|ENST00000651721|IPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3222045898438 2 533.320786 1064.62702 0.95063 0.00050699 0.45949 0.00024506 1.4101 0.00075205 533.3209910605689 102.33 0.12907 96.15 96.052 96.181 -6.1757 10 7 2 0 0 0 0.085487 1 68673 68673 36.466 11.792 1 5359800 15156 892 10318 10521 18224 18224 0.09728978522184661 FYLLNPYTI 9 Unmodified _FYLLNPYTI_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3093872070312 2 572.307875 1142.6012 1.104 0.00063181 0.39434 0.00022569 1.4983 0.00085749 572.3081681366457 100.75 0.18054 94.571 94.431 94.611 -6.1757 15 12 2 0 0 0 0.045537 1 67466 67466 46.921 22.247 1 30870000 15157 1972 10319 10522 18225 18225 0.035600842798885424 FYLLNVDNI 9 Unmodified _FYLLNVDNI_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7953491210938 2 555.795132 1109.57571 0.62606 0.00034796 -0.084325 -4.6868E-05 0.54173 0.00030109 555.7948127355205 92.635 0.26965 92.178 92.014 92.284 -0.4574 30 12 3 0 0 0 0.25297 1 50578 50578 19.439 5.9311 1 1665900 15158 852;15727 10320 10523 18226 18226 0.025306097574684827 FYLLNVDNI 9 Unmodified _FYLLNVDNI_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.7959594726562 2 555.795132 1109.57571 1.5383 0.00085499 -0.14703 -8.1719E-05 1.3913 0.00077328 555.794949011651 92.093 0.34172 92.123 91.966 92.308 0.03019 21 12 2 0 0 0 0.047196 1 51225 51225 46.021 13.715 1 4636100 15159 852;15727 10320 10523 18227 18227 0.025306097574684827 FYLLNVDNI 9 Unmodified _FYLLNVDNI_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7971801757812 2 555.795132 1109.57571 0.54604 0.00030349 2.271 0.0012622 2.8171 0.0015657 555.7964964156632 99.657 0.17758 93.481 93.38 93.558 -6.1757 23 10 3 0 0 0 0.18465 1 66454 66454 24.674 11.166 1 57050000 15160 852;15727 10320 10523 18228 18228 0.025306097574684827 FYLLRYVSL 9 Unmodified _FYLLRYVSL_ 0 0 0 REV__ENST00000492497.1_1_7:102953351-102956256:-|nuORF REV__ENST00000492497.1_1_7:102953351-102956256:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8594360351562 2 587.336967 1172.65938 1.2473 0.00073261 -2.7998 -0.0016444 -1.5525 -0.00091182 587.3350845977982 71.252 0.23526 71.291 71.109 71.344 0.039024 13 9 2 0 0 0 0.203 1 39172 39172 9.3474 0 1 656160 + 15161 27902 10321 10524 18229 18229 0.07995765925170417 FYLLSFFY 8 Unmodified _FYLLSFFY_ 0 0 0 ENST00000528063.5_1_11:66049809-66051065:+|nuORF;ENST00000531936.1_1_11:66050146-66051065:+|nuORF;ENSG00000174871|ENST00000311445|CNIH2;ENSG00000143786|ENST00000272133|CNIH3 ENST00000528063.5_1_11:66049809-66051065:+|nuORF ENST00000528063.5_1_11:66049809-66051065:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.280029296875 2 550.278586 1098.54262 NaN NaN NaN NaN NaN NaN NaN 56.818 1 56.333 55.833 56.833 -0.48554 0 0 0 0.90769 1 30869 30869 18.135 1.9859 1 15162 5551 10322 10525 18230 18230 -0.0027097229456103378 FYLPHGLSI 9 Unmodified _FYLPHGLSI_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7871704101562 2 523.78711 1045.55967 0.12717 6.6609E-05 -0.55733 -0.00029192 -0.43017 -0.00022532 523.7864963297088 75.896 0.31166 75.944 75.797 76.109 0.047943 22 13 2 0 0 0 0.038285 1 41843 41843 50.855 24.514 1 11823000 15163 5718 10323 10526 18231 18231 0.038709483112370435 FYLPHGLSI 9 Unmodified _FYLPHGLSI_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7879638671875 2 523.78711 1045.55967 1.1053 0.00057892 -0.20401 -0.00010686 0.90125 0.00047206 523.7872853498324 91.675 0.54008 85.499 85.165 85.705 -6.1757 65 29 3 0 0 0 0.0094915 3 60575 60444;60575;60724 81.864 33.518 1 18605000 15164 5718 10323 10526 18232;18233;18234 18233 0.038709483112370435 FYLPKDAVKHL 11 Unmodified _FYLPKDAVKHL_ 0 0 0 nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-3|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2556762695312 3 444.255446 1329.74451 1.1553 0.00051325 -0.050947 -2.2634E-05 1.1044 0.00049062 444.25547059688125 47.326 0.37711 47.288 47.1 47.477 -0.038643 54 17 4 0 0 0 0.21145 1 25448 25448 31.462 24.838 1 37008000 15165 971 10324 10527 18235 18235 0.09282511390983927 FYLPKDAVKHL 11 Unmodified _FYLPKDAVKHL_ 0 0 0 nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-3|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2553100585938 3 444.255446 1329.74451 0.8573 0.00038086 -0.44423 -0.00019735 0.41307 0.00018351 444.25516852699894 76.31 0.79022 70.134 69.561 70.351 -6.1757 107 43 3 0 0 0 0.053529 3 49898 49650;49771;49898 50.13 40.586 1 25687000 15166 971 10324 10527 18236;18237;18238 18238 0.09282511390983927 FYLPLDAIKQL 11 Unmodified _FYLPLDAIKQL_ 0 0 0 nc|ENSG00000266094|Q8WWW0-2|RASSF5;nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5 nc|ENSG00000266094|Q8WWW0-2|RASSF5 nc|ENSG00000266094|Q8WWW0-2|RASSF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8836059570312 2 660.881739 1319.74892 2.4893 0.0016452 0.17124 0.00011317 2.6606 0.0017583 660.881894802379 95.489 0.30222 95.493 95.322 95.624 0.004158 34 11 4 0 0 0 0.0078265 1 53026 53026 86.332 61.658 1 7349700 15167 10863 10325 10528 18239 18239 0.10183975813879442 FYLPSSPNL 9 Unmodified _FYLPSSPNL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.1376342773438 2 519.26875 1036.52295 0.17552 9.1143E-05 -0.5626 -0.00029214 -0.38708 -0.000201 519.2684539731972 73.13 0.18156 73.171 73.068 73.25 0.041733 14 8 2 0 0 0 0.040626 1 40279 40279 58.679 41.592 1 2366700 15168 10210 10326 10529 18240 18240 0.006146516946500924 FYLPSSPNL 9 Unmodified _FYLPSSPNL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2683715820312 2 519.26875 1036.52295 0.79038 0.00041042 -1.0067 -0.00052275 -0.21633 -0.00011233 519.267936775987 80.778 0.23392 74.603 74.479 74.713 -6.1757 18 12 2 0 0 0 0.0090948 1 52978 52978 85.272 56.785 1 12391000 15169 10210 10326 10529 18241 18241 0.006146516946500924 FYLRDPIDL 9 Unmodified _FYLRDPIDL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7937622070312 2 576.308406 1150.60226 0.73142 0.00042152 -0.76727 -0.00044218 -0.035852 -2.0662E-05 576.3081907761314 75.699 0.31223 75.222 75.104 75.416 -0.47714 30 13 3 0 0 0 0.11608 1 41406 41406 51.415 22.334 1 3575200 15170 3667 10327 10530 18242 18242 0.03298298648792297 FYLRDPIDL 9 Unmodified _FYLRDPIDL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3118896484375 2 576.308406 1150.60226 0.98462 0.00056745 0.84171 0.00048508 1.8263 0.0010525 576.3082429819846 91.51 0.41554 85.334 85.094 85.509 -6.1757 33 22 2 0 0 0 0.024189 1 60455 60455 59.368 30.287 1 14721000 15171 3667 10327 10530 18243 18243 0.03298298648792297 FYLRDPIDL 9 Unmodified _FYLRDPIDL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 576.308406 1150.60226 0.6015 0.00034665 2.3551 0.0013572 2.9566 0.0017039 576.3094469829588 86.175 0.31451 85.672 85.518 85.833 -0.50318 0.16894 0.0009022 NaN 59.368 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 494510 15172 3667 10327 10530 0.03298298648792297 FYLSTPFL 8 Unmodified _FYLSTPFL_ 0 0 0 REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF REV__ENST00000319555.7_1_16:88601887-88602595:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.262451171875 2 494.262936 986.51132 NaN NaN NaN NaN NaN NaN NaN 86.255 1 85.752 85.252 86.252 -0.50318 0 0 0 0.85111 1 47197 47197 20.871 6.2895 1 + 15173 25496 10328 10531 18244 18244 0.017524546713161726 FYLWACFPFYF 11 Unmodified _FYLWACFPFYF_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.8972778320312 3 501.898382 1502.67332 0.33598 0.00016863 -2.6951 -0.0013527 -2.3592 -0.0011841 501.8969785461494 54.977 0.17709 54.908 54.803 54.98 -0.068741 11 8 2 0 0 0 0.67371 1 29864 29864 3.0723 1.6171 1 2131300 15174 2112 10329 10532 18245 18245 -0.05791324638039441 FYLYVTKV 8 Unmodified _FYLYVTKV_ 0 0 0 ENSG00000100196|ENST00000216014|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2697143554688 2 516.791861 1031.56917 0.19386 0.00010019 -3.7712 -0.0019489 -3.5773 -0.0018487 516.7892474253562 58.509 0.1681 58.018 57.943 58.111 -0.49079 13 7 2 0 0 0 8.7369 1 31796 31796 10.183 3.9776 1 694630 15175 1766 10330 10533 18246 18246 0.05464716596770813 FYLYYCLF 8 Unmodified _FYLYYCLF_ 0 0 0 ENST00000239231.6_1_5:167978076-167978319:-|nuORF ENST00000239231.6_1_5:167978076-167978319:-|nuORF ENST00000239231.6_1_5:167978076-167978319:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7640380859375 2 566.264622 1130.51469 1.4689 0.00083179 -3.0252 -0.0017131 -1.5563 -0.00088128 566.7642490288812 88.144 0.42396 81.968 81.765 82.189 -6.1757 37 23 2 0 0 0 0.76859 1 58284 58284 11.114 0 1 12361000 15176 11100 10331 10534 18247 18247 -0.04534618546335878 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(57)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7530517578125 2 588.755149 1175.49575 -0.95119 -0.00056002 0.03108 1.8299E-05 -0.92011 -0.00054172 588.7552622644399 56.285 0.32559 55.8 55.634 55.96 -0.48554 57 16 4 0 0 0 0.026094 2 30494 30494;30600 57.471 41.624 1 64748000 15177 3315 10332 10535 18248;18249 18248 590 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(51)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.756103515625 2 588.755149 1175.49575 -0.33951 -0.00019989 0.41676 0.00024537 0.077246 4.5479E-05 588.7553900301847 55.912 0.33168 55.843 55.705 56.036 -0.068737 40 17 3 0 0 0 0.038285 1 30369 30369 50.855 31.598 1 17115000 15178 3315 10332 10535 18250 18250 590 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ FYM(1)DTSHLF FYM(74)DTSHLF 0 0 1 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7567138671875 2 588.755149 1175.49575 2.0088 0.0011827 -0.19572 -0.00011523 1.813 0.0010674 588.7550659002036 62.629 0.64705 56.453 56.174 56.821 -6.1757 95 32 4 0 0 0 0.012148 2 40485 40360;40485 74.423 52.676 1 120560000 15179 3315 10332 10535 18251;18252 18252 590 -0.08498199908035531 FYMDTSHLF 9 Oxidation (M) _FYM(Oxidation (M))DTSHLF_ 0 0 1 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.755149 1175.49575 -0.61583 -0.00036257 0.75597 0.00044508 0.14014 8.251E-05 588.7550733867967 55.773 0.1631 55.773 55.69 55.853 0 -0.032514 0.00055771 NaN 57.471 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4488000 15180 3315 10332 10535 590 -0.08498199908035531 FYMDTSHLF 9 Unmodified _FYMDTSHLF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7579956054688 2 580.757692 1159.50083 0.67576 0.00039245 0.24971 0.00014502 0.92547 0.00053747 580.7586006686355 73.105 0.30804 72.629 72.473 72.781 -0.47588 33 13 3 0 0 0 0.12841 2 40064 39967;40064 30.225 15.387 1 2910900 15181 3315 10332 10536 18253;18254 18254 -0.072538960454267 FYMDTSHLF 9 Unmodified _FYMDTSHLF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.75830078125 2 580.757692 1159.50083 0.50556 0.00029361 -0.5696 -0.0003308 -0.064035 -3.7189E-05 580.7575941564413 72.531 0.36224 72.573 72.42 72.782 0.041733 46 16 4 0 0 0 0.06187 2 39926 39926;40035 42.095 29.563 1 7987300 15182 3315 10332 10536 18255;18256 18255 -0.072538960454267 FYMDTSHLF 9 Unmodified _FYMDTSHLF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7567749023438 2 580.757692 1159.50083 0.73882 0.00042908 -0.060318 -3.503E-05 0.6785 0.00039405 580.7572199448269 81.885 1.9347 75.709 75.029 76.964 -6.1757 232 109 3 0 0 0 0.0090851 7 53607 53340;53471;53607;53744;53875;54012;54179 85.357 64.903 1 32515000 15183 3315 10332 10536 18257;18258;18259;18260;18261;18262;18263 18259 -0.072538960454267 FYMHAGSLLL 10 Oxidation (M) _FYM(Oxidation (M))HAGSLLL_ FYM(1)HAGSLLL FYM(67)HAGSLLL 0 0 1 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.297119140625 2 584.296985 1166.57942 0.64147 0.00037481 -0.17886 -0.00010451 0.46261 0.0002703 584.2972232430809 62.041 0.373 62.008 61.808 62.181 -0.032787 58 18 4 0 0 0 0.031389 2 33850 33850;33957 67.344 40.46 1 12727000 15184 6246;6244;9359;9876 10333 10537 18264;18265 18264 1109 0.002789562596944961 FYMHAGSLLL 10 Unmodified _FYMHAGSLLL_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2996826171875 2 576.299527 1150.5845 1.4248 0.00082108 2.088 0.0012033 3.5127 0.0020244 576.2999477021505 95.656 0.35414 89.481 89.247 89.601 -6.1757 37 21 3 0 0 0 0.031389 2 63396 63272;63396 67.344 33.241 1 24203000 15185 6246;6244;9359;9876 10333 10538 18266;18267 18267 0.015232601223260644 FYMINAVTL 9 Unmodified _FYMINAVTL_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-3|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2816162109375 2 536.280803 1070.54705 0.95711 0.00051328 0.92865 0.00049802 1.8858 0.0010113 536.2813137793241 99.388 0.13078 93.213 93.159 93.29 -6.1757 14 8 2 0 0 0 0.045537 1 66180 66180 46.921 27.482 1 30626000 15186 7598 10334 10539 18268 18268 0.014601688566926896 FYMQFYKIKE 10 Unmodified _FYMQFYKIKE_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.8501586914062 2 698.852124 1395.68969 0.40552 0.0002834 -3.1529 -0.0022034 -2.7474 -0.00192 699.3513839690327 59.596 0.19576 59.543 59.399 59.595 -0.053062 14 9 2 0 0 0 0.69848 1 32440 32440 2.9952 0 1 2967200 + 15187 23113 10335 10540 18269 18269 0.007677565280573617 FYMQFYKIKE 10 Unmodified _FYMQFYKIKE_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 698.852124 1395.68969 0.13356 9.3339E-05 -4.4005 -0.0030753 -4.267 -0.002982 699.3501627208133 59.894 0.21218 59.404 59.333 59.545 -0.49079 -0.069763 -0.0010782 NaN 2.9952 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1590000 + 15188 23113 10335 10540 0.007677565280573617 FYMQFYKIKE 10 Unmodified _FYMQFYKIKE_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 698.852124 1395.68969 0.40552 0.0002834 -3.1529 -0.0022034 -2.7474 -0.00192 699.3513839690327 59.596 0.19576 59.543 59.399 59.595 -0.053062 0.069763 0.00066563 NaN 2.9952 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2967200 + 15189 23113 10335 10540 0.007677565280573617 FYMQHYSWFYF 11 Unmodified _FYMQHYSWFYF_ 0 0 0 ENST00000441222.7_1_4:53463611-53463788:-|nuORF ENST00000441222.7_1_4:53463611-53463788:-|nuORF ENST00000441222.7_1_4:53463611-53463788:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 809.844970703125 2 809.84483 1617.67511 NaN NaN NaN NaN NaN NaN NaN 92.717 1 86.542 86.042 87.042 -6.1757 0 0 0 0.94301 1 61325 61325 0.35063 0 1 15190 13393 10336 10541 18270 18270 -0.1090231562009194 FYNEHTNDF 9 Unmodified _FYNEHTNDF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.744384765625 2 593.743628 1185.4727 -0.51375 -0.00030503 -1.3856 -0.00082266 -1.8993 -0.0011277 593.7425578463325 33.638 0.2244 33.638 33.579 33.804 0 24 12 3 0 0 0 0.0090383 1 17660 17660 103.42 43.346 1 8216500 15191 638 10337 10542 18271 18271 -0.11261502701131576 FYNEHTNDF 9 Unmodified _FYNEHTNDF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7432250976562 2 593.743628 1185.4727 0.1415 8.4014E-05 -1.2345 -0.000733 -1.093 -0.00064898 593.7432835857962 38.534 0.26136 34.165 33.996 34.257 -4.3689 21 16 2 0 0 0 0.011211 1 22749 22749 93.166 45.571 1 9436100 15192 638 10337 10542 18272 18272 -0.11261502701131576 FYNEHTNDF 9 Unmodified _FYNEHTNDF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 593.743628 1185.4727 -0.19494 -0.00011575 1.2059 0.000716 1.011 0.00060025 594.2456102778691 33.885 0.12896 33.693 33.589 33.718 -0.19131 0.027788 0.0022561 NaN 103.42 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 653970 15193 638 10337 10542 -0.11261502701131576 FYNGLLFY 8 Unmodified _FYNGLLFY_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2604370117188 2 518.760561 1035.50657 -0.069596 -3.6104E-05 -0.19746 -0.00010244 -0.26706 -0.00013854 518.7606201814785 48.876 0.25021 48.876 48.736 48.986 0 19 11 2 0 0 0 8.7369 1 26835 26835 18.135 2.2878 1 4905400 15194 4782 10338 10543 18273 18273 -0.009764294714386779 FYNLLTRTF 9 Unmodified _FYNLLTRTF_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.81689453125 2 587.816399 1173.61824 1.0648 0.0006259 -0.063356 -3.7242E-05 1.0014 0.00058866 587.8163956562644 91.792 0.8752 85.616 85.111 85.986 -6.1757 145 49 4 0 0 0 0.0081887 3 60693 60573;60693;60810 93.166 62.529 1 158090000 15195 3750 10339 10544 18274;18275;18276 18275 0.038380048857106885 FYNLMDIPYL 10 Unmodified _FYNLMDIPYL_ 0 0 0 REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8158569335938 2 644.81775 1287.62095 -0.55627 -0.00035869 -1.606 -0.0010356 -2.1623 -0.0013943 644.8165787835303 25.444 0.20275 25.444 25.326 25.528 0 20 9 3 0 0 0 0.66569 1 13033 13033 6.7232 0.99131 1 1210300 + 15196 29400 10340 10545 18277 18277 -0.011359077716406318 FYNLMDIPYL 10 Unmodified _FYNLMDIPYL_ 0 0 0 REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 644.81775 1287.62095 -0.55627 -0.00035869 -1.606 -0.0010356 -2.1623 -0.0013943 644.8165787835303 25.444 0.20275 25.444 25.326 25.528 0 0.13198 2.6496E-05 NaN 6.7232 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1210300 + 15197 29400 10340 10545 -0.011359077716406318 FYNLMDIPYL 10 Unmodified _FYNLMDIPYL_ 0 0 0 REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense REV__L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|16|2|sense MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 644.81775 1287.62095 0.46269 0.00029835 -1.6669 -0.0010749 -1.2042 -0.00077651 644.8161637108082 28.328 0.23989 25.18 25.022 25.262 -3.1482 -0.13198 -5.2056E-05 NaN 6.7232 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6454100 + 15198 29400 10340 10545 -0.011359077716406318 FYNMCLPCI 9 Unmodified _FYNMCLPCI_ 0 0 0 REV__ENSG00000204449|ENST00000448984|TRIM49C REV__ENSG00000204449|ENST00000448984|TRIM49C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2393188476562 2 552.239766 1102.46498 0.76797 0.0004241 -0.72268 -0.00039909 0.045289 2.501E-05 552.2392573226706 72.902 0.33369 72.426 72.273 72.606 -0.47588 25 14 2 0 0 0 0.57331 1 39973 39973 0 0 1 831290 + 15199 22362 10341 10546 18278 18278 -0.08215392818283362 FYNPAVSRI 9 Unmodified _FYNPAVSRI_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7880249023438 2 533.787641 1065.56073 0.57943 0.00030929 -0.30734 -0.00016405 0.27209 0.00014524 533.7872718131435 47.593 0.24933 47.554 47.411 47.661 -0.038647 27 11 3 0 0 0 0.029718 1 25638 25638 55.503 37.368 1 6370300 15200 502 10342 10547 18279 18279 0.030571626801247476 FYNPFQFEI 9 Unmodified _FYNPFQFEI_ 0 0 0 ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A ENST00000511766.2_1_6:119215493-119222091:+|nuORF ENST00000511766.2_1_6:119215493-119222091:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 602.7879028320312 2 602.787307 1203.56006 NaN NaN NaN NaN NaN NaN NaN 101.16 1 94.986 94.486 95.486 -6.1757 0 0 0 0.43505 1 67820 67820 18.135 4.6271 1 15201 2840 10343 10548 18280 18280 -0.03357676759583228 FYNPVTSLL 9 Unmodified _FYNPVTSLL_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2852172851562 2 527.2844 1052.55425 2.0857 0.0010998 -0.67667 -0.0003568 1.4091 0.00074298 527.2840364585538 95.159 0.43201 95.163 94.972 95.404 0.004158 40 15 3 0 0 0 0.095405 2 52849 52849;52953 34.102 10.954 1 3961400 15202 7384 10344 10549 18281;18282 18281 0.030072247287762366 FYNPVTSLL 9 Unmodified _FYNPVTSLL_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2865600585938 2 527.2844 1052.55425 1.1948 0.00062999 0.42104 0.00022201 1.6158 0.000852 527.2849929234148 100.34 0.15582 94.163 94.072 94.228 -6.1757 16 9 2 0 0 0 0.078417 1 67063 67063 38.151 4.0487 1 60985000 15203 7384 10344 10549 18283 18283 0.030072247287762366 FYNSGLLDTF 10 Unmodified _FYNSGLLDTF_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7828979492188 2 588.782222 1175.54989 0.48332 0.00028457 0.26805 0.00015783 0.75137 0.0004424 588.7825238175232 83.439 0.38416 82.942 82.741 83.125 -0.49751 45 15 4 0 0 0 0.5905 2 45629 45629;45729 11.64 4.3511 1 2706300 15204 7915 10345 10550 18284;18285 18284 -0.03086284484834323 FYNSGLLDTF 10 Unmodified _FYNSGLLDTF_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7842407226562 2 588.782222 1175.54989 0.91408 0.00053819 2.1954 0.0012926 3.1095 0.0018308 588.7835243939967 92.195 0.49562 86.019 85.74 86.235 -6.1757 46 29 2 0 0 0 0.11755 1 61030 61030 43.858 25.712 1 20285000 15205 7915 10345 10550 18286 18286 -0.03086284484834323 FYNSGLLDTF 10 Unmodified _FYNSGLLDTF_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 588.782222 1175.54989 0.97781 0.00057571 1.1632 0.00068487 2.141 0.0012606 588.7829722666239 82.82 0.3031 82.882 82.691 82.994 0.062004 -0.029853 0.0006139 NaN 11.64 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3336500 15206 7915 10345 10550 -0.03086284484834323 FYNTGAVLF 9 Unmodified _FYNTGAVLF_ 0 0 0 ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-4|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 MSMS AL20221201_MKP_PDAC_01 4 516.2636108398438 2 516.263468 1030.51238 NaN NaN NaN NaN NaN NaN NaN 86.927 1 80.751 80.251 81.251 -6.1757 0 0 0 0.36554 1 57307 57307 21.747 2.3076 1 15207 2456 10346 10551 18287 18287 -0.0016533095979411883 FYNWKRQF 8 Unmodified _FYNWKRQF_ 0 0 0 REV__ENST00000265138.3_1_5:90667021-90667204:-|nuORF REV__ENST00000265138.3_1_5:90667021-90667204:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8026123046875 2 594.801083 1187.58761 0.74245 0.00044161 -1.14 -0.00067805 -0.39751 -0.00023644 594.8009808169165 64.397 0.30135 63.912 63.758 64.059 -0.48512 16 9 2 0 0 0 0.67481 1 35130 35130 19.439 3.2899 1 1219400 + 15208 25089 10347 10552 18288 18288 0.0013227129131792026 FYPEEISSMVL 11 Unmodified _FYPEEISSMVL_ 0 0 0 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.3197021484375 2 657.817947 1313.62134 0.70209 0.00046185 0.51161 0.00033654 1.2137 0.00079839 657.8176621679056 99.499 0.22456 93.324 93.174 93.399 -6.1757 21 14 2 0 0 0 0.15484 1 66318 66318 36.127 13.391 1 32464000 15209 10277;8286 10348 10553 18289 18289 -0.02292532842466244 FYPEEVSSMVL 11 Unmodified _FYPEEVSSMVL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MSMS AL20221201_MKP_PDAC_01 4 650.807861328125 2 650.810122 1299.60569 NaN NaN NaN NaN NaN NaN NaN 93.396 1 87.221 86.721 87.721 -6.1757 0 0 0 0.76159 1 61817 61817 13.906 0.86358 1 15210 2688 10349 10554 18290 18290 -0.03212819359509922 FYPFHELI 8 Unmodified _FYPFHELI_ 0 0 0 REV__ENSG00000053254|ENST00000557258|FOXN3 REV__ENSG00000053254|ENST00000557258|FOXN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.3036499023438 2 533.273835 1064.53312 NaN NaN NaN NaN NaN NaN NaN 68.223 1 68.223 67.723 68.723 0 0 0 0 0.97348 1 38035 38035 5.7604 0.46354 1 + 15211 17274 10350 10555 18291 18291 0.0034325941990118736 FYPFPVPPL 9 Unmodified _FYPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7960205078125 2 538.794404 1075.57425 0.70051 0.00037743 3.2051 0.0017269 3.9056 0.0021043 538.7952980713048 101.52 0.18758 95.344 95.274 95.461 -6.1757 19 9 3 0 0 0 0.085487 1 68129 68129 36.466 18.331 1 12860000 15212 3763 10351 10556 18292 18292 0.039490204593676026 FYPGYLCSL 9 Carbamidomethyl (C) _FYPGYLC(Carbamidomethyl (C))SL_ FYPGYLC(1)SL FYPGYLC(57)SL 0 1 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2623901367188 2 560.26261 1118.51067 0.34754 0.00019471 0.70063 0.00039253 1.0482 0.00058725 560.2628345708526 85.468 0.41989 79.292 79.075 79.495 -6.1757 63 25 3 0 0 0 0.027803 2 56202 56202;56341 56.541 38.406 1 43615000 15213 2068 10352 10557 18293;18294 18293 205 -0.043847080400382765 FYPHAFNVKF 10 Unmodified _FYPHAFNVKF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2197570800781 3 423.885353 1268.63423 0.52054 0.00022065 0.31248 0.00013245 0.83302 0.0003531 423.8855073262164 58.753 0.3543 58.693 58.546 58.901 -0.060719 43 17 3 0 0 0 0.22237 2 32002 32002;32105 32.037 27.848 1 4779600 15214 8214 10353 10558 18295;18296 18295 0.010657111226009874 FYPHEPLKI 9 Unmodified _FYPHEPLKI_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8782653808594 3 381.878087 1142.61243 0.65092 0.00024857 0.97653 0.00037291 1.6274 0.00062149 381.8785462582803 46.98 0.42697 46.644 46.367 46.794 -0.33664 31 21 2 0 0 0 0.25681 1 25226 25226 23.79 18.493 1 7079000 15215 8186 10354 10559 18297 18297 0.04682906374023332 FYPICICYL 9 Unmodified _FYPICICYL_ 0 0 0 ENST00000504771.2_1_5:118691243-118691579:+|nuORF ENST00000504771.2_1_5:118691243-118691579:+|nuORF ENST00000504771.2_1_5:118691243-118691579:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7679443359375 2 567.771757 1133.52896 NaN NaN NaN NaN NaN NaN NaN 65.442 1 64.957 64.457 65.457 -0.48428 0 0 0 0.70111 1 35718 35718 9.3474 0.75416 1 15216 14500 10355 10560 18298 18298 -0.03246289389699086 FYPIIYFL 8 Unmodified _FYPIIYFL_ 0 0 0 REV__ENSG00000111962|ENST00000367463|UST REV__ENSG00000111962|ENST00000367463|UST MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2938842773438 2 538.296779 1074.57901 0.86376 0.00046496 -3.5231 -0.0018965 -2.6594 -0.0014315 538.2946749785348 101.32 0.1315 95.141 95.079 95.211 -6.1757 19 7 3 0 0 0 0.61999 1 67912 67912 24.21 3.7563 1 88612000 + 15217 18780 10356 10561 18299 18299 0.04469904602137831 FYPIKSVHF 9 Unmodified _FYPIKSVHF_ 0 0 0 REV__ENSG00000121314|ENST00000240615|TAS2R8 REV__ENSG00000121314|ENST00000240615|TAS2R8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5233154296875 3 379.874565 1136.60187 -0.32326 -0.0001228 -3.1525 -0.0011976 -3.4758 -0.0013204 380.20785139582944 34.995 0.22535 34.773 34.669 34.895 -0.2224 13 9 2 0 0 0 0.21242 1 18355 18355 2.9952 0 1 667720 + 15218 19287 10357 10562 18300 18300 0.039029237196018585 FYPNDPHSC 9 Unmodified _FYPNDPHSC_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 REV__nc|ENSG00000087116|O95450-2|ADAMTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.216552734375 2 540.216192 1078.41783 -1.0228 -0.00055256 1.1016 0.00059511 0.078768 4.2552E-05 540.2167876661911 77.874 0.5143 77.392 77.121 77.636 -0.4826 168 36 7 0 0 0 0.55144 1 42558 42558 4.3292 0.38484 1 47530000 + 15219 21314;17778;20320 10358 10563 18301 18301 -0.11824212773399267 FYPNDPHSC 9 Unmodified _FYPNDPHSC_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 REV__nc|ENSG00000087116|O95450-2|ADAMTS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.216192 1078.41783 0.12326 6.6589E-05 1.4984 0.00080945 1.6217 0.00087604 540.216865902721 77.384 0.35838 77.434 77.246 77.605 0.05011 0.022792 0.00076386 NaN 4.3292 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3524700 + 15220 21314;17778;20320 10358 10563 -0.11824212773399267 FYPPDPAQL 9 Unmodified _FYPPDPAQL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2611694335938 2 524.260925 1046.5073 0.44301 0.00023225 -1.0396 -0.00054504 -0.59663 -0.00031279 524.2605365125909 64.218 0.76003 64.218 63.779 64.539 0 108 32 4 0 0 0 0.039985 3 35713 35713;35819;35928 49.933 26.785 1 12286000 15221 1487 10359 10564 18302;18303;18304 18302 -0.014096348223802124 FYPPDPAQL 9 Unmodified _FYPPDPAQL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2614135742188 2 524.260925 1046.5073 0.3652 0.00019146 -0.048655 -2.5508E-05 0.31655 0.00016595 524.2609340358628 64.823 0.81715 64.338 63.887 64.704 -0.48512 136 37 5 0 0 0 0.015445 3 35402 35170;35295;35402 68.081 44.932 1 13927000 15222 1487 10359 10564 18305;18306;18307 18307 -0.014096348223802124 FYPPDPAQL 9 Unmodified _FYPPDPAQL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1047.408569335938 1 1047.51457 1046.5073 0.36428 0.00038159 -1.6829 -0.0017628 -1.3186 -0.0013812 1047.5117325706756 64.748 0.38802 64.263 64.102 64.49 -0.48512 25 17 2 0 0 0 0.18811 1 35279 35279 17.113 5.4726 1 1473300 15223 1487 10359 10564 18308 18308 -0.014096348223802124 FYPPDPAQL 9 Unmodified _FYPPDPAQL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2611694335938 2 524.260925 1046.5073 1.2114 0.0006351 -2.4392 -0.0012788 -1.2278 -0.0006437 524.2591006622487 71.401 0.77122 65.225 64.943 65.714 -6.1757 97 39 3 0 0 0 0.0059585 3 46547 46547;46663;46782 114.65 76.675 1 138180000 15224 1487 10359 10564 18309;18310;18311 18309 -0.014096348223802124 FYPPDPAQL 9 Unmodified _FYPPDPAQL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;nc|ENSG00000159023|P11171-7|EPB41;nc|ENSG00000159023|P11171-5|EPB41;nc|ENSG00000159023|P11171-3|EPB41;nc|ENSG00000159023|P11171-2|EPB41;ENSG00000159023|ENST00000343067|EPB41;nc|ENSG00000159023|P11171-4|EPB41;nc|ENSG00000159023|P11171-6|EPB41 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1047.51457 1046.5073 -0.45267 -0.00047418 0.36367 0.00038095 -0.088995 -9.3224E-05 1047.5148283996693 64.202 0.43261 64.202 63.953 64.386 0 -0.030209 0.00066361 NaN 17.113 35 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1367200 15225 1487 10359 10564 -0.014096348223802124 FYPPEIYMTWM 11 Unmodified _FYPPEIYMTWM_ 0 0 0 nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1 nc|ENSG00000153029|Q95460-2|MR1 nc|ENSG00000153029|Q95460-2|MR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2229919433594 3 493.222537 1476.64578 1.3649 0.00067322 -0.39963 -0.0001971 0.96531 0.00047611 493.22247700071415 41.914 0.38943 37.307 37.077 37.467 -4.6079 61 24 3 0 0 0 0.65108 1 25257 25257 4.4062 0.81348 1 37528000 15226 6230 10360 10565 18312 18312 -0.07347595960595754 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3110961914062 2 570.310418 1138.60628 0.88532 0.0005049 -0.54521 -0.00031094 0.3401 0.00019396 570.3106412492539 74.804 0.74217 74.328 73.864 74.606 -0.47588 104 31 4 0 0 0 0.10734 4 40843 40738;40843;40948;41055 32.305 16.458 1 14880000 15227 4045 10361 10566 18313;18314;18315;18316 18314 0.0425238814250406 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3108520507812 2 570.310418 1138.60628 0.32291 0.00018416 0.66781 0.00038086 0.99073 0.00056502 570.3107087507149 74.198 0.81651 74.242 73.864 74.68 0.043983 148 36 5 0 0 0 0.06294 4 40937 40729;40836;40937;41037 41.84 25.992 1 143800000 15228 4045 10361 10566 18317;18318;18319;18320 18319 0.0425238814250406 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3117065429688 2 570.310418 1138.60628 NaN NaN NaN NaN NaN NaN NaN 74.638 1 74.684 74.184 75.184 0.045959 0 0 0 0.7818 1 41144 41144 6.7232 0.96273 1 15229 4045 10361 10566 18321 18321 0.0425238814250406 FYPPKVELF 9 Unmodified _FYPPKVELF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.31103515625 2 570.310418 1138.60628 1.2286 0.00070067 -0.053459 -3.0488E-05 1.1751 0.00067018 570.3102651187959 88.658 1.7811 82.482 81.277 83.058 -6.1757 336 99 5 0 0 0 0.10734 7 58482 57985;58105;58224;58353;58482;58601;58726 32.305 16.458 1 377530000 15230 4045 10361 10566 18322;18323;18324;18325;18326;18327;18328 18326 0.0425238814250406 FYPTLLYTL 9 Unmodified _FYPTLLYTL_ 0 0 0 ENSG00000110536|ENST00000326674|PTPMT1;nc|ENSG00000110536|Q8WUK0-2|PTPMT1;nc|ENSG00000110536|Q8WUK0-3|PTPMT1 ENSG00000110536|ENST00000326674|PTPMT1 ENSG00000110536|ENST00000326674|PTPMT1 MSMS AL20221201_MKP_PDAC_01 4 565.8110961914062 2 565.810251 1129.60595 NaN NaN NaN NaN NaN NaN NaN 101.17 1 94.992 94.492 95.492 -6.1757 0 0 0 0.33856 1 67826 67826 23.148 7.3012 1 15231 2725 10362 10567 18329 18329 0.04632968422674821 FYPTLSEPI 9 Unmodified _FYPTLSEPI_ 0 0 0 nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000253305|ENST00000520790|PCDHGB6 nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.1975708007812 3 356.186697 1065.53826 1.1355 0.00040446 -0.11712 -4.1717E-05 1.0184 0.00036274 356.1867040843919 27.961 0.31036 24.812 24.731 25.041 -3.1482 24 16 2 0 0 0 0.19613 1 15698 15698 4.897 2.9906 1 6410900 15232 10763 10363 10568 18330 18330 0.008115184918551677 FYPYGLQTF 9 Unmodified _FYPYGLQTF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2763671875 2 568.276575 1134.5386 0.20167 0.0001146 0.41671 0.00023681 0.61838 0.00035141 568.277142798536 80.2 0.76538 80.257 79.797 80.563 0.057587 58 35 2 0 0 0 0.078417 1 44215 44215 38.151 13.477 1 28261000 15233 1777 10364 10569 18331 18331 -0.02329061788304898 FYPYPQYFTQL 11 Unmodified _FYPYPQYFTQL_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 734.3549194335938 2 733.853178 1465.6918 0.7162 0.00052559 -0.25838 -0.00018961 0.45782 0.00033598 734.354292451953 99.169 0.17305 92.993 92.908 93.081 -6.1757 19 9 3 0 0 0 0.00098399 1 65964 65964 83.429 56.545 1 45376000 15234 2107 10365 10570 18332 18332 -0.022414914624960147 FYQEHPDL 8 Unmodified _FYQEHPDL_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7409057617188 2 524.740357 1047.46616 0.87354 0.00045838 -0.35474 -0.00018615 0.5188 0.00027223 524.7404586763834 36.759 0.20916 36.759 36.628 36.837 0 22 9 3 0 0 0 0.26159 1 19518 19518 60.39 35.716 1 2754500 15235 2594 10366 10571 18333 18333 -0.055673958618626784 FYQKEHWNYF 10 Unmodified _FYQKEHWNYF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.8910827636719 3 487.891055 1460.65134 0.48753 0.00023786 -0.58967 -0.00028769 -0.10213 -4.983E-05 487.89076643207613 48.813 0.25429 48.769 48.654 48.908 -0.04369 35 12 4 0 0 0 0.60478 1 26352 26352 10.899 4.7071 1 8817300 15236 9967 10367 10572 18334 18334 -0.06056413062242427 FYQKRHRHF 9 Unmodified _FYQKRHRHF_ 0 0 0 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 MSMS AL20221201_MKP_PDAC_01 4 440.5693359375 3 440.235379 1317.68431 NaN NaN NaN NaN NaN NaN NaN 15.554 1 13.027 12.527 13.527 -2.5273 0 0 0 0.81228 1 7991 7991 5.7319 1.0159 1 15237 622 10368 10573 18335 18335 0.03817258571120874 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8173828125 2 599.816399 1197.61824 0.53294 0.00031966 0.44612 0.00026759 0.97906 0.00058726 599.8169580584207 52.496 0.19275 52.062 51.985 52.177 -0.43367 12 9 2 0 0 0 0.32235 1 28388 28388 23.148 10.617 1 3562400 15238 5247 10369 10574 18336 18336 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8169555664062 2 599.816399 1197.61824 0.37942 0.00022758 -0.30283 -0.00018164 0.076585 4.5937E-05 599.816237093157 52.185 0.32866 52.126 51.939 52.267 -0.058918 47 15 4 0 0 0 0.0094097 2 28221 28221;28320 104.8 75.718 1 22777000 15239 5247 10369 10574 18337;18338 18337 0.027340048857013244 FYQPKIQQF 9 Unmodified _FYQPKIQQF_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8170166015625 2 599.816399 1197.61824 0.38016 0.00022803 2.3823 0.0014289 2.7624 0.001657 599.816676681552 58.314 0.56573 52.24 52 52.565 -6.0745 109 30 5 0 0 0 0.0087807 3 37299 37299;37423;37563 133.7 82.072 1 100720000 15240 5247 10369 10574 18339;18340;18341 18339 0.027340048857013244 FYQREFDFF 9 Unmodified _FYQREFDFF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000492581.5_1_22:21067427-21075805:-|nuORF;ENST00000466772.5_1_22:21065465-21081626:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.7969360351562 2 649.795663 1297.57677 -0.56779 -0.00036895 0.29206 0.00018978 -0.27573 -0.00017917 649.7959668345478 77.28 0.24422 76.797 76.647 76.892 -0.4826 20 10 2 0 0 0 0.14 1 42280 42280 29.082 17.441 1 1117000 15241 10689 10370 10575 18342 18342 -0.0601117587364115 FYQREFDFF 9 Unmodified _FYQREFDFF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;ENST00000492581.5_1_22:21067427-21075805:-|nuORF;ENST00000466772.5_1_22:21065465-21081626:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.796875 2 649.795663 1297.57677 0.38692 0.00025142 0.54674 0.00035527 0.93366 0.00060669 649.7957585766695 76.718 0.27565 76.768 76.635 76.91 0.05011 28 11 3 0 0 0 0.017075 1 42331 42331 66.457 49.344 1 4134500 15242 10689 10370 10575 18343 18343 -0.0601117587364115 FYQRFFCF 8 Unmodified _FYQRFFCF_ 0 0 0 REV__ENST00000373580.7_1_9:127573985-127574087:+|nuORF REV__ENST00000373580.7_1_9:127573985-127574087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.763671875 2 579.265487 1156.51642 0.38149 0.00022098 -1.6371 -0.00094833 -1.2556 -0.00072735 579.7653888565524 53.991 0.32109 53.524 53.285 53.606 -0.46664 31 15 3 0 0 0 0.72953 1 29212 29212 14.582 2.0501 1 2802700 + 15243 26152 10371 10576 18344 18344 -0.05557564737705434 FYQRFPLSF 9 Unmodified _FYQRFPLSF_ 0 0 0 ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF ENSG00000134109|ENST00000256497|EDEM1 ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3133544921875 2 602.811116 1203.60768 0.50334 0.00030342 0.054277 3.2719E-05 0.55762 0.00033614 602.810963951973 93.946 0.63197 87.77 87.486 88.118 -6.1757 60 36 2 0 0 0 0.0074135 3 62179 62129;62179;62311 110.67 70.717 1 38495000 15244 4558 10372 10577 18345;18346;18347 18346 0.014020222312637998 FYQSEIKRLF 10 Unmodified _FYQSEIKRLF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2421569824219 3 444.243317 1329.70812 NaN NaN NaN NaN NaN NaN NaN 56.011 1 55.943 55.443 56.443 -0.068737 0 0 0 0.87645 1 30452 30452 8.9762 2.7844 1 15245 8296;16388 10373 10578 18348 18348 0.056456344942716896 FYQVLSNFIE 10 Unmodified _FYQVLSNFIE_ 0 0 0 REV__ENSG00000164823|ENST00000451899|OSGIN2 REV__ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3200073242188 2 630.318971 1258.62339 0.2243 0.00014138 -0.27317 -0.00017219 -0.048869 -3.0803E-05 630.3188538582282 63.869 0.29828 63.384 63.193 63.492 -0.48512 20 16 2 0 0 0 0.44373 1 34827 34827 19.257 0.88389 1 4108700 + 15246 21954 10374 10579 18349 18349 0.0044226395766600035 FYQYATSLAL 10 Unmodified _FYQYATSLAL_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.30419921875 2 588.800414 1175.58628 0.40262 0.00023707 -0.35416 -0.00020853 0.048463 2.8535E-05 588.7997707474331 58.14 0.27998 52.112 52.047 52.327 -6.0275 28 14 3 0 0 0 0.18021 2 37298 37244;37298 36.127 3.6527 1 43450000 + 15247 21687 10375 10580 18350;18351 18351 0.005505924119233896 FYRDGSAL 8 Unmodified _FYRDGSAL_ 0 0 0 ENST00000470841.1_1_1:161680536-161681272:+|nuORF;nc|ENSG00000132185|Q7L513-8|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-10|FCRLA ENST00000470841.1_1_1:161680536-161681272:+|nuORF ENST00000470841.1_1_1:161680536-161681272:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.4580078125 1 928.452308 927.445031 0.99369 0.00092259 0.72813 0.00067603 1.7218 0.0015986 928.4529067600562 63.453 0.78197 57.277 57 57.782 -6.1757 51 44 2 0 0 0 0.63229 1 41008 41008 23.148 3.7094 1 10131000 15248 4377 10376 10581 18352 18352 -0.02159361170708962 FYRFSWEDV 9 Unmodified _FYRFSWEDV_ 0 0 0 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8611145019531 3 416.860984 1247.56112 -0.68008 -0.0002835 -0.072172 -3.0086E-05 -0.75226 -0.00031359 416.8608709821733 15.685 0.249 15.685 15.57 15.819 0 96 58 2 0 0 0 0.61381 1 7530 7530 0.23584 0.076522 1 829270 15249 1668 10377 10582 18353 18353 -0.05275462390682151 FYRSTAPS 8 Unmodified _FYRSTAPS_ 0 0 0 nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL nc|ENSG00000116990|P12524-2|MYCL nc|ENSG00000116990|P12524-2|MYCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.452392578125 1 928.452308 927.445031 1.3159 0.0012217 -1.4849 -0.0013787 -0.16905 -0.00015696 928.4513730723824 47.102 0.24588 47.069 46.956 47.202 -0.033417 16 12 2 0 0 0 0.24071 1 25343 25343 63.563 7.0216 1 9901300 15250 3273 10378 10583 18354 18354 -0.02159361170720331 FYRSTAPS 8 Unmodified _FYRSTAPS_ 0 0 0 nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL nc|ENSG00000116990|P12524-2|MYCL nc|ENSG00000116990|P12524-2|MYCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.4541625976562 1 928.452308 927.445031 -0.045275 -4.2036E-05 -0.72755 -0.0006755 -0.77282 -0.00071753 928.4514345485301 53.641 0.32867 53.577 53.481 53.809 -0.063423 43 22 2 0 0 0 0.24071 1 29086 29086 63.563 16.642 1 17486000 15251 3273 10378 10583 18355 18355 -0.02159361170720331 FYRSTAPS 8 Unmodified _FYRSTAPS_ 0 0 0 nc|ENSG00000116990|P12524-2|MYCL;ENSG00000116990|ENST00000372816|MYCL;nc|ENSG00000116990|P12524-3|MYCL nc|ENSG00000116990|P12524-2|MYCL nc|ENSG00000116990|P12524-2|MYCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4500122070312 1 928.452308 927.445031 0.94044 0.00087315 -1.6468 -0.0015289 -0.70633 -0.00065579 928.4505734392671 59.752 0.74147 53.638 53.496 54.238 -6.1147 72 40 2 0 0 0 0.31612 1 38488 38488 53.576 6.6547 1 51418000 15252 3273 10378 10583 18356 18356 -0.02159361170720331 FYRSYFSQF 9 Unmodified _FYRSYFSQF_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK;nc|ENSG00000168297|Q7Z7A4-3|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3116455078125 2 622.790381 1243.56621 0.5211 0.00032454 -2.1685 -0.0013505 -1.6474 -0.001026 622.7900723113142 61.188 0.29189 61.144 60.947 61.239 -0.04351 21 14 3 0 0 0 0.12281 1 33384 33384 36.506 13.77 1 12616000 15253 7744 10379 10584 18357 18357 -0.04583158528066633 FYRYSEYYYQF 11 Unmodified _FYRYSEYYYQF_ 0 0 0 REV__nc|ENSG00000032742|Q13099-3|IFT88 REV__nc|ENSG00000032742|Q13099-3|IFT88 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.5733642578125 3 543.573392 1627.69835 NaN NaN NaN NaN NaN NaN NaN 76.342 1 75.863 75.363 76.363 -0.47945 0 0 0 0.94301 1 41789 41789 0.094841 0 1 + 15254 17150 10380 10585 18358 18358 -0.09039598301751539 FYSEICNML 9 Carbamidomethyl (C) _FYSEIC(Carbamidomethyl (C))NML_ FYSEIC(1)NML FYSEIC(48)NML 0 1 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.757568359375 2 588.756835 1175.49912 0.0084082 4.9504E-06 1.2411 0.00073073 1.2495 0.00073568 588.7572279583532 84.93 0.35914 78.754 78.564 78.924 -6.1757 36 20 2 0 0 0 0.042911 1 55873 55873 48.346 34.44 1 13601000 15255 3322 10381 10586 18359 18359 339 -0.0816127312568824 FYSELFTLY 9 Unmodified _FYSELFTLY_ 0 0 0 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.26123046875 2 591.789515 1181.56448 0.4958 0.00029341 2.9367 0.0017379 3.4325 0.0020313 591.7902878438268 87.483 0.13786 86.979 86.9 87.038 -0.50423 8 5 2 0 0 0 0.203 1 47861 47861 9.3474 2.0582 1 286870 15256 8725 10382 10587 18360 18360 -0.01904212336648925 FYSENVSRI 9 Unmodified _FYSENVSRI_ 0 0 0 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.278076171875 2 557.780013 1113.54547 0.10273 5.7299E-05 1.0554 0.00058868 1.1581 0.00064598 557.7816184896496 61.416 0.44251 60.926 60.694 61.137 -0.48932 29 20 2 0 0 0 0.43463 1 33394 33394 10.824 0 1 2970900 15257 5733 10383 10588 18361 18361 -0.006757489077244827 FYSISQERF 9 Unmodified _FYSISQERF_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7899780273438 2 588.787838 1175.56112 0.53118 0.00031275 1.6137 0.00095014 2.1449 0.0012629 588.7889635822551 56.842 0.24508 50.865 50.811 51.056 -5.9769 22 14 2 0 0 0 0.015688 1 36371 36371 67.838 16.983 1 21470000 15258 9214 10384 10589 18362 18362 -0.019634623906767956 FYSKFFNLR 9 Unmodified _FYSKFFNLR_ 0 0 0 REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1 REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2192687988281 3 407.885353 1220.63423 -0.54001 -0.00022026 -2.748 -0.0011209 -3.288 -0.0013411 407.8841007363157 17.856 0.085554 17.87 17.827 17.913 0.013865 15 9 2 0 0 0 0.60664 1 8910 8910 0.96228 0 1 454580 + 15259 29868 10385 10590 18363 18363 0.032737111225969784 FYSNIQTVI 9 Unmodified _FYSNIQTVI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.788818359375 2 542.787307 1083.56006 -0.15244 -8.2742E-05 -0.88475 -0.00048023 -1.0372 -0.00056297 542.7873506356913 69.302 0.29645 68.821 68.627 68.923 -0.48071 34 12 4 0 0 0 0.087258 2 37824 37824;37926 36.044 13.308 1 4621000 15260 8957 10386 10591 18364;18365 18364 0.02162323240418118 FYSNIQTVI 9 Unmodified _FYSNIQTVI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7874145507812 2 542.787307 1083.56006 0.63837 0.0003465 -2.1385 -0.0011608 -1.5002 -0.00081427 542.786794526477 68.802 0.28188 68.827 68.662 68.944 0.025146 36 12 4 0 0 0 0.10734 1 37783 37783 32.305 12.866 1 6794800 15261 8957 10386 10591 18366 18366 0.02162323240418118 FYSNIQTVI 9 Unmodified _FYSNIQTVI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.78662109375 2 542.787307 1083.56006 0.33961 0.00018434 0.27234 0.00014782 0.61195 0.00033216 542.7873243470616 76.538 0.53549 70.363 70.164 70.7 -6.1757 46 28 2 0 0 0 0.015445 2 50122 49993;50122 68.081 28.131 1 25540000 15262 8957 10386 10591 18367;18368 18368 0.02162323240418118 FYSRLLQKF 9 Unmodified _FYSRLLQKF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2294311523438 3 401.229119 1200.66553 0.3595 0.00014424 -0.60871 -0.00024423 -0.24921 -9.9991E-05 401.2290934009341 52.795 0.39799 52.731 52.563 52.961 -0.063423 75 19 5 0 0 0 0.094149 2 28580 28580;28685 32.037 12.412 1 55457000 15263 8420 10387 10592 18369;18370 18369 0.07322284156703063 FYSRLLQKF 9 Unmodified _FYSRLLQKF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8413696289062 2 601.340041 1200.66553 0.4098 0.00024643 -1.5789 -0.00094944 -1.1691 -0.00070301 601.3385412848287 52.8 0.29738 52.736 52.603 52.901 -0.063423 41 14 4 0 0 0 0.021948 2 28625 28625;28662 61.602 21.652 1 12308000 15264 8420 10387 10592 18371;18372 18371 0.07322284156703063 FYSRLLQKF 9 Unmodified _FYSRLLQKF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2292785644531 3 401.229119 1200.66553 0.2407 9.6578E-05 -0.060434 -2.4248E-05 0.18027 7.233E-05 401.2295232366703 85.441 0.72819 79.265 78.837 79.566 -6.1757 87 44 3 0 0 0 0.19127 1 56212 56212 22.658 9.7855 1 83190000 15265 8420 10387 10592 18373 18373 0.07322284156703063 FYSSHPALF 9 Unmodified _FYSSHPALF_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2627563476562 2 534.761092 1067.50763 0.34304 0.00018344 -0.35469 -0.00018968 -0.011652 -6.2311E-06 534.7606935822201 54.811 0.24282 54.744 54.6 54.843 -0.066936 16 11 2 0 0 0 0.12841 1 29752 29752 30.225 17.693 1 1879600 15266 10661 10388 10593 18374 18374 -0.023422151025442872 FYSTRSAP 8 Unmodified _FYSTRSAP_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.452392578125 1 928.452308 927.445031 -0.045275 -4.2036E-05 -0.72755 -0.0006755 -0.77282 -0.00071753 928.4514345485301 53.641 0.32867 53.577 53.481 53.809 -0.063423 43 22 2 0 0 0 0.28922 1 29193 29193 56.541 2.9657 1 17486000 15267 4940 10389 10594 18375 18375 -0.02159361170708962 FYSTRSAP 8 Unmodified _FYSTRSAP_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4528198242188 1 928.452308 927.445031 0.94044 0.00087315 -1.6468 -0.0015289 -0.70633 -0.00065579 928.4505734392671 59.752 0.74147 53.638 53.496 54.238 -6.1147 72 40 2 0 0 0 0.28922 1 38336 38336 56.541 2.9657 1 51418000 15268 4940 10389 10594 18376 18376 -0.02159361170708962 FYTAIAQAF 9 Unmodified _FYTAIAQAF_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.263916015625 2 516.263468 1030.51238 0.32359 0.00016706 -0.15079 -7.7848E-05 0.1728 8.921E-05 516.2633751116175 75.714 0.30618 75.762 75.582 75.888 0.047943 22 13 2 0 0 0 0.019979 1 41754 41754 63.563 52.448 1 3827200 15269 2211 10390 10595 18377 18377 -0.0016533095979411883 FYTAYLQRL 9 Unmodified _FYTAYLQRL_ 0 0 0 nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1 nc|ENSG00000116260|O00391-2|QSOX1 nc|ENSG00000116260|O00391-2|QSOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.317626953125 2 587.816399 1173.61824 0.79561 0.00046767 -0.91425 -0.00053741 -0.11864 -6.974E-05 587.8159007535152 65.291 0.29111 65.291 65.14 65.431 7.6294E-06 35 13 4 0 0 0 0.0090948 1 35764 35764 85.272 45.315 1 16480000 15270 3210 10391 10596 18378 18378 0.038380048857106885 FYTERLERL 9 Unmodified _FYTERLERL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8907165527344 3 409.555784 1225.64552 0.14384 5.8911E-05 0.20168 8.2599E-05 0.34552 0.00014151 409.55577108446084 42.868 0.29851 42.558 42.379 42.678 -0.31039 22 12 2 0 0 0 0.047194 1 22766 22766 46.022 17.528 1 17039000 15271 4231;14002 10392 10597 18379 18379 0.04172488426070231 FYTERLERL 9 Unmodified _FYTERLERL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.554931640625 3 409.555784 1225.64552 1.2263 0.00050222 -0.33828 -0.00013855 0.88797 0.00036367 409.55561056938905 47.9 0.32602 42.666 42.482 42.808 -5.2339 45 19 3 0 0 0 0.171 1 29747 29747 26.021 7.6476 1 31587000 15272 4231;14002 10392 10597 18380 18380 0.04172488426070231 FYTERLERL 9 Unmodified _FYTERLERL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MSMS AL20221201_MKP_PDAC_01 4 613.830322265625 2 613.830037 1225.64552 NaN NaN NaN NaN NaN NaN NaN 47.893 1 42.659 42.159 43.159 -5.2339 0 0 0 0.18257 1 29777 29777 34.932 10.911 1 15273 4231;14002 10392 10597 18381 18381 0.04172488426070231 FYTERLERL 9 Unmodified _FYTERLERL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENST00000477923.1_1_10:135093272-135094982:-|nuORF nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 409.555784 1225.64552 0.69287 0.00028377 0.59764 0.00024477 1.2905 0.00052853 409.5561775200043 42.638 0.17568 42.638 42.524 42.7 0 0.017322 0.00055306 NaN 46.022 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1618800 15274 4231;14002 10392 10597 0.04172488426070231 FYTFPFQQL 9 Unmodified _FYTFPFQQL_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.7974853515625 2 595.797675 1189.5808 3.0621 0.0018244 -2.1964 -0.0013086 0.86576 0.00051582 595.7961547611046 97.662 0.35361 97.644 97.519 97.873 -0.018188 30 12 3 0 0 0 0.010877 2 54269 54255;54269 77.984 56.238 1 10302000 15275 5153 10393 10598 18382;18383 18383 -0.006410863799146682 FYTFPFQQL 9 Unmodified _FYTFPFQQL_ 0 0 0 ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7979125976562 2 595.797675 1189.5808 0.74721 0.00044519 -1.1561 -0.00068881 -0.4089 -0.00024362 595.7967141275334 100.39 0.1501 94.214 94.141 94.291 -6.1757 26 9 3 0 0 0 0.010877 1 67126 67126 77.984 56.238 1 76057000 15276 5153 10393 10598 18384 18384 -0.006410863799146682 FYTFRESHAL 10 Unmodified _FYTFRESHAL_ 0 0 0 nc|ENSG00000151623|P08235-4|NR3C2;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2 nc|ENSG00000151623|P08235-4|NR3C2 nc|ENSG00000151623|P08235-4|NR3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3129272460938 2 635.814387 1269.61422 0.70485 0.00044815 2.4737 0.0015728 3.1786 0.002021 635.8160179396674 101.45 0.15235 95.271 95.178 95.33 -6.1757 17 7 3 0 0 0 0.42068 1 68037 68037 20.454 2.3073 1 39986000 15277 6129 10394 10599 18385 18385 -0.009800846079997427 FYTIFKELF 9 Unmodified _FYTIFKELF_ 0 0 0 ENSG00000075336|ENST00000169551|TIMM21;ENST00000581467.1_1_18:71816037-71822653:+|nuORF ENSG00000075336|ENST00000169551|TIMM21 ENSG00000075336|ENST00000169551|TIMM21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.324462890625 2 604.323525 1206.6325 2.0487 0.0012381 1.1736 0.00070923 3.2222 0.0019473 604.3234374331682 95.149 0.34982 95.153 94.972 95.322 0.004158 26 12 3 0 0 0 0.06294 1 52858 52858 41.84 20.093 1 2517800 15278 1151 10395 10600 18386 18386 0.03744657313995958 FYTIFKELF 9 Unmodified _FYTIFKELF_ 0 0 0 ENSG00000075336|ENST00000169551|TIMM21;ENST00000581467.1_1_18:71816037-71822653:+|nuORF ENSG00000075336|ENST00000169551|TIMM21 ENSG00000075336|ENST00000169551|TIMM21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.324462890625 2 604.323525 1206.6325 0.69471 0.00041983 -0.43564 -0.00026327 0.25906 0.00015656 604.3234116200229 100.29 0.12659 94.112 94.044 94.171 -6.1757 11 7 2 0 0 0 0.017075 1 67023 67023 66.457 24.362 1 26683000 15279 1151 10395 10600 18387 18387 0.03744657313995958 FYTINRYTL 9 Unmodified _FYTINRYTL_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8414916992188 2 595.813856 1189.61316 0.44469 0.00026495 0.43746 0.00026065 0.88215 0.0005256 595.813663772399 58.588 0.21082 58.527 58.432 58.643 -0.060719 16 10 2 0 0 0 0.07631 1 31907 31907 38.176 15.027 1 2129200 15280 536 10396 10601 18388 18388 0.025937010230791202 FYTKRFQEL 9 Unmodified _FYTKRFQEL_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.327880859375 2 616.327131 1230.63971 0.38091 0.00023476 -1.4425 -0.00088906 -1.0616 -0.0006543 616.3261583216052 38.487 0.1422 38.504 38.46 38.603 0.01704 11 6 2 0 0 0 0.020316 1 20491 20491 43.772 14.691 1 2008300 15281 8783 10397 10602 18389 18389 0.03361389914425672 FYTKRFQEL 9 Unmodified _FYTKRFQEL_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2209777832031 3 411.220513 1230.63971 0.85663 0.00035226 -0.051129 -2.1025E-05 0.8055 0.00033124 411.2205176784698 43.358 0.40027 38.593 38.39 38.791 -4.7648 48 27 2 0 0 0 0.011739 2 26355 26224;26355 75.571 47.337 1 29560000 15282 8783 10397 10602 18390;18391 18391 0.03361389914425672 FYTKRFQEL 9 Unmodified _FYTKRFQEL_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS;ENST00000580356.5_1_17:8159124-8159921:+|nuORF ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.220513 1230.63971 -0.066302 -2.7265E-05 -0.62866 -0.00025852 -0.69496 -0.00028578 411.2202893395587 38.536 0.25151 38.553 38.394 38.645 0.01704 -0.019838 -0.00038196 NaN 75.571 35 11 4 NaN NaN NaN NaN 0 NaN NaN 0 15239000 15283 8783 10397 10602 0.03361389914425672 FYTKRLTFW 9 Unmodified _FYTKRLTFW_ 0 0 0 ENSG00000164604|ENST00000424100|GPR85 ENSG00000164604|ENST00000424100|GPR85 ENSG00000164604|ENST00000424100|GPR85 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2284851074219 3 421.229119 1260.66553 NaN NaN NaN NaN NaN NaN NaN 44.612 1 44.59 44.09 45.09 -0.022064 0 0 0 0.18753 1 23940 23940 23.79 0 1 15284 7212 10398 10603 18392 18392 0.04562284156668284 FYTLPFHLI 9 Unmodified _FYTLPFHLI_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8197021484375 2 575.81841 1149.62227 1.2309 0.00070876 0.88502 0.00050961 2.1159 0.0012184 575.8183062312119 100.3 0.098373 94.128 94.058 94.157 -6.1757 8 5 2 0 0 0 0.045537 1 67055 67055 46.921 16.696 1 12414000 15285 8757 10399 10604 18393 18393 0.05344094379415765 FYTQFEVF 8 Unmodified _FYTQFEVF_ 0 0 0 REV__ENSG00000152779|ENST00000371790|SLC16A12 REV__ENSG00000152779|ENST00000371790|SLC16A12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7144775390625 2 540.755475 1079.4964 0.211 0.0001141 -2.4548 -0.0013275 -2.2438 -0.0012134 540.7545078120622 69.737 0.081787 69.737 69.673 69.754 0 5 3 2 0 0 0 8.7369 1 38828 38828 13.508 4.9146 1 370740 + 15286 21135 10400 10605 18394 18394 -0.040170371966723906 FYTQLLQEL 9 Unmodified _FYTQLLQEL_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8093872070312 2 577.808239 1153.60193 0.92032 0.00053177 1.2331 0.00071247 2.1534 0.0012442 577.8087443204822 99.491 0.12253 93.316 93.276 93.399 -6.1757 14 7 3 0 0 0 0.015445 1 66302 66302 68.081 24.222 1 37719000 15287 16141 10401 10606 18395 18395 0.03126878928969745 FYTQPGPCPTL 11 Unmodified _FYTQPGPCPTL_ 0 0 0 REV__ENST00000464108.5_1_9:130687427-130689571:-|nuORF REV__ENST00000464108.5_1_9:130687427-130689571:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5475463867188 3 408.530358 1222.56925 -0.53052 -0.00021673 1.138 0.00046492 0.60751 0.00024819 408.8635311001455 28.959 0.15998 28.959 28.883 29.043 0 11 7 2 0 0 0 0.28752 1 14943 14943 7.4771 0 1 561570 + 15288 27367 10402 10607 18396 18396 -0.033136514655552674 FYTRELSNFYF 11 Unmodified _FYTRELSNFYF_ 0 0 0 ENST00000467924.1_1_1:220313569-220316509:+|nuORF;ENSG00000067704|ENST00000366922|IARS2 ENST00000467924.1_1_1:220313569-220316509:+|nuORF ENST00000467924.1_1_1:220313569-220316509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2389221191406 3 496.238232 1485.69287 0.097045 4.8158E-05 3.5352 0.0017543 3.6323 0.0018025 496.2398110410983 35.412 0.14175 35.437 35.373 35.515 0.024967 8 6 2 0 0 0 0.72131 1 18742 18742 2.2527 0.92309 1 1739000 15289 963 10403 10608 18397 18397 -0.030552770935855733 FYTRWKHYER 10 Unmodified _FYTRWKHYER_ 0 0 0 REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.917724609375 3 495.917716 1484.73132 -0.32724 -0.00016228 -0.51668 -0.00025623 -0.84392 -0.00041851 495.91753023472603 56.107 0.30879 56.039 55.885 56.194 -0.068741 56 15 5 0 0 0 0.69377 1 30558 30558 1.7423 0.52744 1 95335000 + 15290 22890 10404 10609 18398 18398 0.008340733315890247 FYTSITRARF 10 Unmodified _FYTSITRARF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2276000976562 3 421.227779 1260.66151 -0.085878 -3.6174E-05 0.57792 0.00024344 0.49204 0.00020726 421.5623826639404 44.501 0.24971 44.479 44.346 44.595 -0.022068 31 12 3 0 0 0 0.12584 1 23842 23842 42.835 27.878 1 30546000 15291 10277;2688;8286 10405 10610 18399 18399 0.04160194662949834 FYTSITRARF 10 Unmodified _FYTSITRARF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.339111328125 2 631.33803 1260.66151 0.89952 0.0005679 -0.21226 -0.00013401 0.68726 0.00043389 631.3378955813274 49.663 0.24863 44.124 44.034 44.282 -5.5391 26 15 2 0 0 0 0.0054279 1 31029 31029 100.71 81.452 1 26427000 15292 10277;2688;8286 10405 10610 18400 18400 0.04160194662949834 FYTSITRARF 10 Unmodified _FYTSITRARF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2281494140625 3 421.227779 1260.66151 1.3584 0.0005722 0.11723 4.9379E-05 1.4756 0.00062158 421.2277758857325 49.685 0.37245 44.146 43.985 44.357 -5.5391 58 23 3 0 0 0 0.30673 2 31071 31071;31203 27.088 18.644 1 97239000 15293 10277;2688;8286 10405 10610 18401;18402 18401 0.04160194662949834 FYTSITRARF 10 Unmodified _FYTSITRARF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MSMS AL20221201_MKP_PDAC_01 4 631.339599609375 2 631.33803 1260.66151 NaN NaN NaN NaN NaN NaN NaN 49.823 1 44.284 43.784 44.784 -5.5391 0 0 0 0.70199 1 31169 31169 13.906 3.8321 1 15294 10277;2688;8286 10405 10610 18403 18403 0.04160194662949834 FYTSKLWSTF 10 Unmodified _FYTSKLWSTF_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.3226318359375 2 640.321514 1278.62847 0.34603 0.00022157 0.63496 0.00040658 0.98099 0.00062815 640.321792347663 74.269 0.38242 74.313 74.137 74.52 0.043983 51 16 4 0 0 0 0.044582 2 41013 40905;41013 78.06 57.646 1 20173000 15295 9767 10406 10611 18404;18405 18405 0.0003056782027215377 FYTSKLWSTF 10 Unmodified _FYTSKLWSTF_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.322021484375 2 640.321514 1278.62847 0.71606 0.00045851 0.38197 0.00024458 1.098 0.00070309 640.3215920221237 93.785 0.60825 87.609 87.272 87.88 -6.1757 111 35 4 0 0 0 0.0028787 3 61947 61947;62078;62211 128.58 105.92 1 94133000 15296 9767 10406 10611 18406;18407;18408 18406 0.0003056782027215377 FYTVINPLL 9 Unmodified _FYTVINPLL_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3110961914062 2 540.310418 1078.60628 0.69185 0.00037381 0.98356 0.00053143 1.6754 0.00090524 540.3109622770638 101.51 0.14298 95.339 95.252 95.395 -6.1757 12 6 3 0 0 0 0.078417 1 68119 68119 38.151 0 1 52640000 15297 8219 10407 10612 18409 18409 0.07012388142516102 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.28955078125 2 569.290017 1136.56548 0.20856 0.00011873 -0.46279 -0.00026346 -0.25422 -0.00014473 569.2896470406005 65.929 0.43417 65.445 65.195 65.629 -0.48428 50 18 4 0 0 0 0.024189 1 36017 36017 65.235 47.089 1 16198000 15298 657 10408 10613 18410 18410 0.0026604682288962067 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.290771484375 2 569.290017 1136.56548 0.98567 0.00056113 -0.12539 -7.138E-05 0.86028 0.00048975 569.2900647204282 73.578 1.4983 67.402 66.618 68.116 -6.1757 217 74 4 0 0 0 0.0085366 6 47922 47922;48036;48150;48262;48383;48509 99.799 81.653 1 112340000 15299 657 10408 10613 18411;18412;18413;18414;18415;18416 18411 0.0026604682288962067 FYTVIPHNF 9 Unmodified _FYTVIPHNF_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2901000976562 2 569.290017 1136.56548 1.1366 0.00064708 -0.50138 -0.00028543 0.63525 0.00036164 569.2900459572058 74.559 1.0377 68.383 68.064 69.102 -6.1757 169 55 5 0 0 0 0.014182 5 49122 48629;48749;48863;48993;49122 85.642 66.28 1 107710000 15300 657 10408 10613 18417;18418;18419;18420;18421 18421 0.0026604682288962067 FYTVYYEF 8 Unmodified _FYTVYYEF_ 0 0 0 REV__ENST00000317147.9_1_16:58554392-58554671:-|nuORF REV__ENST00000317147.9_1_16:58554392-58554671:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7579956054688 2 566.255308 1130.49606 0.53678 0.00030396 -0.23322 -0.00013206 0.30356 0.0001719 566.2550077069233 74.501 0.35387 74.501 74.318 74.672 0 23 15 2 0 0 0 0.80232 1 41413 41413 5.2307 0.90143 1 1515100 + 15301 25476 10409 10614 18422 18422 -0.06396456916536408 FYTYDEAF 8 Unmodified _FYTYDEAF_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2221069335938 2 528.221465 1054.42838 0.83672 0.00044197 1.389 0.00073372 2.2258 0.0011757 528.2221559026498 79.547 0.66418 79.058 78.571 79.235 -0.48932 48 28 2 0 0 0 0.80143 1 43530 43530 5.7604 1.4312 1 4213500 + 15302 17769 10410 10615 18423 18423 -0.09665906847340011 FYVDHVNR 8 Unmodified _FYVDHVNR_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2 nc|ENSG00000002746|Q76N89-2|HECW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2611694335938 2 525.261791 1048.50903 NaN NaN NaN NaN NaN NaN NaN 87.857 1 87.857 87.357 88.357 0 0 0 0 0.97444 1 48641 48641 2.5775 0.51773 1 15303 265;5050 10411 10616 18424 18424 -0.013285810137858789 FYVDSDMVNEF 11 Unmodified _FYVDSDMVNEF_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.7891845703125 2 683.287011 1364.55947 1.2691 0.00086718 -0.37981 -0.00025952 0.88933 0.00060767 683.2866342090588 85.882 0.4442 79.707 79.462 79.907 -6.1757 38 24 2 0 0 0 0.10551 2 56625 56483;56625 41.84 30.345 1 14777000 15304 1860 10412 10617 18425;18426 18426 -0.1082288426159721 FYVDTVRAF 9 Unmodified _FYVDTVRAF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2879028320312 2 559.287474 1116.5604 -0.10718 -5.9944E-05 0.19492 0.00010902 0.087741 4.9072E-05 559.2880664377652 61.046 0.25897 60.557 60.456 60.715 -0.48932 21 12 2 0 0 0 0.018301 1 33253 33253 65.235 39.836 1 6802100 15305 8655 10413 10618 18427 18427 0.0067774296028346726 FYVDTVRAF 9 Unmodified _FYVDTVRAF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2886352539062 2 559.287474 1116.5604 0.67698 0.00037863 0.59841 0.00033468 1.2754 0.00071331 559.2876445583086 60.634 0.25012 60.59 60.476 60.726 -0.043507 29 12 3 0 0 0 0.010611 1 33057 33057 78.728 46.423 1 18547000 15306 8655 10413 10618 18428 18428 0.0067774296028346726 FYVDTVRAF 9 Unmodified _FYVDTVRAF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2890625 2 559.287474 1116.5604 0.77558 0.00043377 -0.041677 -2.331E-05 0.7339 0.00041046 559.2874565133473 66.896 0.62209 60.72 60.489 61.111 -6.1757 56 34 2 0 0 0 0.036857 1 43550 43550 51.63 23.143 1 37858000 15307 8655 10413 10618 18429 18429 0.0067774296028346726 FYVFIIPFE 9 Unmodified _FYVFIIPFE_ 0 0 0 ENST00000479590.1_1_3:186271391-186272251:-|nuORF;nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1 ENST00000479590.1_1_3:186271391-186272251:-|nuORF ENST00000479590.1_1_3:186271391-186272251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8112182617188 2 587.812793 1173.61103 0.43206 0.00025397 -0.80653 -0.00047409 -0.37447 -0.00022012 587.8121879705213 74.305 0.5638 74.349 74.05 74.614 0.043976 96 24 5 0 0 0 0.5029 1 41069 41069 7.2892 3.3448 1 152620000 15308 3006 10414 10619 18430 18430 0.031172722852716106 FYVGATLTF 9 Unmodified _FYVGATLTF_ 0 0 0 nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2 nc|ENSG00000180881|Q9BXY5-3|CAPS2 nc|ENSG00000180881|Q9BXY5-3|CAPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7649841308594 2 509.765843 1017.51713 -0.15985 -8.1484E-05 -3.2167 -0.0016397 -3.3765 -0.0017212 509.7643516511274 60.228 0.23612 59.737 59.63 59.866 -0.49079 24 11 3 0 0 0 0.12841 1 32774 32774 30.225 3.8835 1 12642000 15309 8929 10415 10620 18431 18431 0.009075531829921601 FYVKRAELW 9 Unmodified _FYVKRAELW_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5560607910156 3 404.557236 1210.64988 1.0884 0.00044032 -3.0765 -0.0012446 -1.9881 -0.00080431 404.5558692623496 50.017 0.22114 49.968 49.865 50.087 -0.048828 14 10 2 0 0 0 0.40476 1 27053 27053 12.241 0.74595 1 1517000 15310 9308 10416 10621 18432 18432 0.052979976396500206 FYVNVKEQF 9 Unmodified _FYVNVKEQF_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2992553710938 2 587.300581 1172.58661 -0.18618 -0.00010934 -1.3212 -0.00077596 -1.5074 -0.0008853 587.2994492438715 55.878 0.19975 55.81 55.666 55.866 -0.068741 16 10 2 0 0 0 0.15471 1 30380 30380 27.629 0 1 4069800 15311 6142 10417 10622 18433 18433 0.007220121317459416 FYVNVKEQF 9 Unmodified _FYVNVKEQF_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.30126953125 2 587.300581 1172.58661 0.64864 0.00038094 0.75034 0.00044067 1.399 0.00082162 587.301112125513 61.869 0.39679 55.693 55.537 55.934 -6.1757 38 21 3 0 0 0 0.11784 1 40032 40032 31.268 12.011 1 39449000 15312 6142 10417 10622 18434 18434 0.007220121317459416 FYVNVKEQF 9 Unmodified _FYVNVKEQF_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 587.300581 1172.58661 -0.77057 -0.00045256 -2.6383 -0.0015495 -3.4088 -0.002002 587.8011126789311 55.492 0.12002 55.492 55.389 55.509 0 -0.18946 -0.0021282 NaN 31.268 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 635910 15313 6142 10417 10622 0.007220121317459416 FYVNVKEQF 9 Unmodified _FYVNVKEQF_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU;ENST00000506535.1_1_4:185619454-185631498:-|nuORF nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 587.300581 1172.58661 -0.89252 -0.00052418 -2.2265 -0.0013076 -3.119 -0.0018318 587.2996660531363 56.216 0.22949 55.731 55.614 55.843 -0.48554 0.049362 -0.0016445 NaN 31.268 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 8851800 15314 6142 10417 10622 0.007220121317459416 FYVPAEPKLAF 11 Unmodified _FYVPAEPKLAF_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.3465576171875 2 641.347532 1280.68051 0.19715 0.00012644 1.7984 0.0011534 1.9955 0.0012798 641.3488958097456 77.008 0.35754 77.058 76.889 77.246 0.050102 34 14 3 0 0 0 0.11933 1 42471 42471 40.239 22.093 1 4330800 15315 5868 10418 10623 18435 18435 0.05139731234021383 FYVPAEPKLAF 11 Unmodified _FYVPAEPKLAF_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.3465576171875 2 641.347532 1280.68051 0.89109 0.0005715 0.40273 0.00025829 1.2938 0.00082979 641.3469764191115 90.515 0.48573 84.34 84.091 84.577 -6.1757 65 28 3 0 0 0 0.065225 2 59700 59700;59833 47.594 23.574 1 23295000 15316 5868 10418 10623 18436;18437 18436 0.05139731234021383 FYVRGLFSF 9 Unmodified _FYVRGLFSF_ 0 0 0 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.30126953125 2 568.300384 1134.58622 NaN NaN NaN NaN NaN NaN NaN 88.26 1 88.314 87.814 88.814 0.053352 0 0 0 0.02218 1 49098 49098 75.761 39.634 1 15317 4168;16184;15680 10419 10624 18438 18438 0.024306372025876044 FYVTLVHSPFC 11 Unmodified _FYVTLVHSPFC_ 0 0 0 REV__ENST00000340437.8_1_11:61171541-61171646:-|nuORF REV__ENST00000340437.8_1_11:61171541-61171646:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1312.979370117188 1 1312.63946 1311.63218 0.15972 0.00020966 2.0491 0.0026897 2.2088 0.0028993 1312.64124128385 85.187 0.12226 85.25 85.214 85.336 0.063171 5 4 2 0 0 0 0.29698 1 47194 47194 8.7454 2.0222 1 31031000 + 15318 25692 10420 10625 18439 18439 -0.01117085677515206 FYVTNVLEI 9 Unmodified _FYVTNVLEI_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.7569580078125 2 549.297507 1096.58046 0.30841 0.00016941 -3.1082 -0.0017073 -2.7998 -0.0015379 549.2954339200048 99.86 0.15482 93.684 93.6 93.755 -6.1757 13 11 2 0 0 0 0.17275 1 66656 66656 21.747 0 1 24661000 15319 4011 10421 10626 18440 18440 0.03603493900232024 FYWFLDTLF 9 Unmodified _FYWFLDTLF_ 0 0 0 ENST00000366663.9_1_1:230975176-230975578:-|nuORF ENST00000366663.9_1_1:230975176-230975578:-|nuORF ENST00000366663.9_1_1:230975176-230975578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.8045654296875 2 626.307875 1250.6012 -0.058265 -3.6492E-05 -3.8362 -0.0024026 -3.8944 -0.0024391 626.3045022847616 70.12 0.31142 69.641 69.602 69.914 -0.47903 25 16 2 0 0 0 0.39863 1 38350 38350 12.532 0.29089 1 1888400 15320 12207 10422 10627 18441 18441 -0.014079157201194903 FYWVLNWF 8 Unmodified _FYWVLNWF_ 0 0 0 REV__nc|ENSG00000174485|Q7Z401|DENND4A;REV__nc|ENSG00000137145|Q5VZ89-3|DENND4C REV__nc|ENSG00000174485|Q7Z401|DENND4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7880249023438 2 587.789653 1173.56475 NaN NaN NaN NaN NaN NaN NaN 101.4 1 101.36 100.86 101.86 -0.04216 0 0 0 0.97444 1 56335 56335 2.8892 0.31174 1 + 15321 22795;20217 10423 10628 18442 18442 -0.015087478261420983 FYWWPSIR 8 Unmodified _FYWWPSIR_ 0 0 0 REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B REV__nc|ENSG00000148110|Q5SR56-2|MFSD14B MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5302124023438 3 385.53091 1153.5709 0.84437 0.00032553 -1.296 -0.00049964 -0.45161 -0.00017411 385.53034686415555 45.3 0.95992 40.345 39.872 40.832 -4.9549 158 64 3 0 0 0 0.77186 1 27963 27963 8.1555 1.0538 1 37922000 + 15322 20926 10424 10629 18443 18443 0.0002577040534106345 FYYEADEYQ 9 Unmodified _FYYEADEYQ_ 0 0 0 REV__ENSG00000119922|ENST00000371826|IFIT2 REV__ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2459716796875 2 614.245669 1226.47678 0.54432 0.00033435 -0.41158 -0.00025281 0.13274 8.1535E-05 614.245060536705 91.381 0.1396 90.886 90.824 90.963 -0.49458 10 6 2 0 0 0 0.61256 1 49953 49953 0.6015 0 1 351870 + 15323 19219 10425 10630 18444 18444 -0.1273945799810008 FYYSTGIFKDA 11 Unmodified _FYYSTGIFKDA_ 0 0 0 ENSG00000059804|ENST00000075120|SLC2A3;ENST00000490763.1_1_12:8078421-8082456:-|nuORF;nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000173262|Q8TDB8-5|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3;nc|ENSG00000173262|Q8TDB8-4|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.3163452148438 2 656.316428 1310.6183 0.68192 0.00044756 -0.086669 -5.6882E-05 0.59525 0.00039067 656.3161738898401 67.43 0.294 67.448 67.297 67.591 0.018028 35 14 3 0 0 0 0.35681 1 37009 37009 23.79 1.0535 1 9919600 15324 821;8308 10426 10631 18445 18445 -0.02458039904945508 FYYTPEHL 8 Unmodified _FYYTPEHL_ 0 0 0 REV__nc|ENSG00000290649|Q8NH63|OR51H1 REV__nc|ENSG00000290649|Q8NH63|OR51H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.25048828125 2 535.2531 1068.49165 0.25323 0.00013554 -2.5643 -0.0013726 -2.3111 -0.001237 535.2515193341952 64.222 0.52156 64.222 63.906 64.427 0 32 22 3 0 0 0 0.80143 1 35864 35864 5.7604 0.52976 1 1151300 + 15325 30031 10427 10632 18446 18446 -0.039859213394493054 FYYVTVQDF 9 Unmodified _FYYVTVQDF_ 0 0 0 REV__ENSG00000110925|ENST00000228515|CSRNP2 REV__ENSG00000110925|ENST00000228515|CSRNP2 MSMS AL20221201_MKP_PDAC_01 4 591.309814453125 2 591.279315 1180.54408 NaN NaN NaN NaN NaN NaN NaN 102.19 1 96.011 95.511 96.511 -6.1757 0 0 0 0.82739 1 68581 68581 4.3292 0.73274 1 + 15326 18729 10428 10633 18447 18447 -0.03897382996478882 FYYYDPQEE 9 Unmodified _FYYYDPQEE_ 0 0 0 nc|ENSG00000274211|O14512-2|SOCS7;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7 nc|ENSG00000274211|O14512-2|SOCS7 nc|ENSG00000274211|O14512-2|SOCS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5058898925781 3 418.504755 1252.49243 1.1689 0.00048917 1.1289 0.00047244 2.2977 0.00096161 418.5053702372883 34.787 1.0656 30.692 30.301 31.367 -4.0951 103 63 3 0 0 0 0.55144 1 19970 19970 2.4985 1.4849 1 11612000 15327 10899 10429 10634 18448 18448 -0.12371171481049714 GAAAIILTY 9 Unmodified _GAAAIILTY_ 0 0 0 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 892.51318359375 1 892.513845 891.506569 -0.42511 -0.00037942 -0.46745 -0.00041721 -0.89257 -0.00079663 892.513409559405 70.476 0.74525 69.998 69.759 70.505 -0.47735 117 51 3 0 0 0 0.045537 3 38574 38466;38574;38813 46.921 8.7697 1 30993000 15328 5192 10430 10635 18449;18450;18451 18450 0.05647570528549295 GAAAIILTY 9 Unmodified _GAAAIILTY_ 0 0 0 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 892.5142822265625 1 892.513845 891.506569 0.55168 0.00049238 -0.67737 -0.00060456 -0.12569 -0.00011218 892.5133037969803 69.968 0.50524 69.999 69.826 70.331 0.030914 55 25 3 0 0 0 0.0094915 2 38544 38425;38544 81.864 6.4723 1 13640000 15329 5192 10430 10635 18452;18453 18453 0.05647570528549295 GAAAIILTY 9 Unmodified _GAAAIILTY_ 0 0 0 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 892.5136108398438 1 892.513845 891.506569 -0.24225 -0.00021621 0.51504 0.00045968 0.27279 0.00024347 892.5142022796005 77.023 1.1208 70.848 70.431 71.551 -6.1757 149 62 3 0 0 0 0.0094915 3 50526 50174;50526;50643 81.864 14.52 1 87415000 15330 5192 10430 10635 18454;18455;18456 18455 0.05647570528549295 GAAAIILTY 9 Unmodified _GAAAIILTY_ 0 0 0 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.76123046875 2 446.760561 891.506569 0.3988 0.00017817 -0.22301 -9.963E-05 0.17579 7.8537E-05 446.7603673447152 77.072 0.82459 70.897 70.521 71.346 -6.1757 98 45 3 0 0 0 0.010712 4 50228 50228;50344;50470;50600 78.445 38.487 1 26958000 15331 5192 10430 10635 18457;18458;18459;18460 18457 0.05647570528549295 GAADWEVF 8 Unmodified _GAADWEVF_ 0 0 0 nc|ENSG00000175894|Q8WU66-2|TSPEAR;ENSG00000175894|ENST00000323084|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7037353515625 2 447.703243 893.391933 0.061578 2.7569E-05 -0.010895 -4.8779E-06 0.050683 2.2691E-05 447.70318688857776 48.32 0.38191 48.32 48.149 48.531 0 40 18 3 0 0 0 0.67481 2 26450 26450;26559 19.439 6.9074 1 26000000 15332 8547 10431 10636 18461;18462 18461 -0.05902738953386688 GAADWEVF 8 Unmodified _GAADWEVF_ 0 0 0 nc|ENSG00000175894|Q8WU66-2|TSPEAR;ENSG00000175894|ENST00000323084|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7042236328125 2 447.703243 893.391933 1.3742 0.00061522 0.32279 0.00014451 1.6969 0.00075973 447.70342821718043 53.864 0.37297 48.06 47.899 48.272 -5.8042 41 22 3 0 0 0 0.5953 1 34100 34100 26.341 1.6674 1 17578000 15333 8547 10431 10636 18463 18463 -0.05902738953386688 GAADWEVF 8 Unmodified _GAADWEVF_ 0 0 0 nc|ENSG00000175894|Q8WU66-2|TSPEAR;ENSG00000175894|ENST00000323084|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR nc|ENSG00000175894|Q8WU66-2|TSPEAR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 447.703243 893.391933 0.29848 0.00013363 0.28086 0.00012574 0.57934 0.00025937 447.70340193710535 48.557 0.21855 48.185 48.039 48.258 -0.37172 -0.0029503 0.00010844 NaN 26.341 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 6652000 15334 8547 10431 10636 -0.05902738953386688 GAAEKVFSY 9 Unmodified _GAAEKVFSY_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2444458007812 2 486.245275 970.475997 0.4147 0.00020165 -0.84359 -0.00041019 -0.42889 -0.00020854 486.24490251163763 39.207 0.26576 39.207 39.036 39.302 0 39 12 4 0 0 0 0.047788 1 20941 20941 45.7 13.394 1 21482000 15335 10258 10432 10637 18464 18464 -0.010422078564715775 GAAEKVFSY 9 Unmodified _GAAEKVFSY_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.78515625 2 486.245275 970.475997 0.094891 4.614E-05 -0.26665 -0.00012966 -0.17176 -8.3517E-05 486.24487844742333 39.441 0.19439 39.143 39.07 39.264 -0.29716 14 8 2 0 0 0 0.19891 1 20801 20801 7.2892 0 1 2064900 15336 10258 10432 10637 18465 18465 -0.010422078564715775 GAAEKVFSY 9 Unmodified _GAAEKVFSY_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.24560546875 2 486.245275 970.475997 0.54079 0.00026295 -2.0721 -0.0010075 -1.5313 -0.00074458 486.24424257833135 44.18 0.4246 39.328 39.117 39.541 -4.852 63 30 3 0 0 0 0.0087923 2 27055 26912;27055 103.42 39.183 1 37321000 15337 10258 10432 10637 18466;18467 18467 -0.010422078564715775 GAAELRAEL 9 Unmodified _GAAELRAEL_ 0 0 0 ENSG00000218891|ENST00000325421|ZNF579 ENSG00000218891|ENST00000325421|ZNF579 ENSG00000218891|ENST00000325421|ZNF579 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.256103515625 2 465.256174 928.497795 0.54946 0.00025564 0.14056 6.5396E-05 0.69002 0.00032103 465.255958234746 39.822 0.2123 39.822 39.7 39.912 0 18 10 2 0 0 0 0.07087 1 21377 21377 39.95 12.321 1 1522100 15338 10546 10433 10638 18468 18468 0.030685968920693085 GAAGALLVY 9 Unmodified _GAAGALLVY_ 0 0 0 ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;RAB4B|p.R79Q|1|0.18|ENSG00000167578|chr19:40783801-40783801|G/A|missense_variant;ENSG00000167578|ENST00000357052|RAB4B;ENSG00000168118|ENST00000366690|RAB4A;nc|ENSG00000167578|P61018-2|RAB4B;ENST00000597476.5_1_19:41285769-41292865:+|nuORF;ENSG00000129472|ENST00000397762|RAB2B;nc|ENSG00000129472|Q8WUD1-2|RAB2B ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENSG00000129472|ENST00000397762|RAB2B ENSG00000129472|ENST00000397762|RAB2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 834.471923828125 1 834.47198 833.464704 0.0152 1.2684E-05 0.29978 0.00025015 0.31498 0.00026284 834.4725326396045 63.468 0.29808 63.468 63.338 63.636 0 28 16 2 0 0 0 0.085487 1 35382 35382 36.466 8.2929 1 4334600 15339 4138;2202 10434 10639 18469 18469 0.041310148400384605 GAAGALLVY 9 Unmodified _GAAGALLVY_ 0 0 0 ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A;RAB4B|p.R79Q|1|0.18|ENSG00000167578|chr19:40783801-40783801|G/A|missense_variant;ENSG00000167578|ENST00000357052|RAB4B;ENSG00000168118|ENST00000366690|RAB4A;nc|ENSG00000167578|P61018-2|RAB4B;ENST00000597476.5_1_19:41285769-41292865:+|nuORF;ENSG00000129472|ENST00000397762|RAB2B;nc|ENSG00000129472|Q8WUD1-2|RAB2B ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENSG00000129472|ENST00000397762|RAB2B ENSG00000129472|ENST00000397762|RAB2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.4730834960938 1 834.47198 833.464704 0.023392 1.952E-05 -0.27429 -0.00022889 -0.2509 -0.00020937 834.472002715555 63.888 0.35785 63.403 63.234 63.592 -0.48512 34 19 2 0 0 0 0.085487 1 34896 34896 36.466 8.2929 1 5675700 15340 4138;2202 10434 10639 18470 18470 0.041310148400384605 GAAGARLVGP 10 Unmodified _GAAGARLVGP_ 0 0 0 REV__ENST00000520777.5_1_1:1564875-1564941:+|nuORF REV__ENST00000520777.5_1_1:1564875-1564941:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2237548828125 2 434.753601 867.49265 -0.45181 -0.00019642 0.2913 0.00012665 -0.1605 -6.9779E-05 434.7536750077084 33.9 0.18205 33.9 33.765 33.947 0 13 8 2 0 0 0 0.22327 1 17830 17830 12.532 0 1 1472900 + 15341 28283 10435 10640 18471 18471 0.053603378201387386 GAAGHDPAHPP 11 Unmodified _GAAGHDPAHPP_ 0 0 0 ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7406005859375 2 513.741222 1025.46789 -0.36304 -0.00018651 -0.94014 -0.00048299 -1.3032 -0.0006695 513.7408430708388 18.465 0.15199 18.465 18.391 18.543 0 30 18 2 0 0 0 0.35243 1 9168 9168 24.021 2.2739 1 1559800 15342 15809 10436 10641 18472 18472 -0.04382342053258981 GAAGILLRY 9 Unmodified _GAAGILLRY_ 0 0 0 nc|ENSG00000131470|Q9P2W1-2|PSMC3IP;ENSG00000131470|ENST00000393795|PSMC3IP nc|ENSG00000131470|Q9P2W1-2|PSMC3IP nc|ENSG00000131470|Q9P2W1-2|PSMC3IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2790222167969 2 467.279452 932.544351 0.057777 2.6998E-05 -0.010146 -4.7412E-06 0.047631 2.2257E-05 467.2793230833045 55.287 0.30122 55.218 55.057 55.358 -0.068741 24 14 2 0 0 0 0.010877 1 30033 30033 77.984 33.577 1 2851500 15343 4329 10437 10642 18473 18473 0.07538081514042005 GAAGLVHVQ 9 Unmodified _GAAGLVHVQ_ 0 0 0 REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF REV__ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.73876953125 2 426.240327 850.466101 0.15503 6.6079E-05 0.85307 0.00036361 1.0081 0.00042969 426.2402002716827 69.008 0.27638 68.527 68.443 68.719 -0.48071 16 11 2 0 0 0 0.21242 1 37714 37714 5.2307 0 1 995560 + 15344 20989 10438 10643 18474 18474 0.0348864892880556 GAAGVHFIY 9 Unmodified _GAAGVHFIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.74267578125 2 467.742702 933.470852 0.36155 0.00016911 -0.50564 -0.00023651 -0.14409 -6.7397E-05 467.74239232154935 52.044 0.56139 51.61 51.381 51.942 -0.43367 86 28 4 0 0 0 0.028712 2 28003 28003;28114 56.048 35.177 1 327480000 15345 7918 10439 10644 18475;18476 18475 0.0014553307156575102 GAAGVHFIY 9 Unmodified _GAAGVHFIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7431640625 2 467.742702 933.470852 -0.01791 -8.3771E-06 0.90648 0.000424 0.88857 0.00041562 467.7430819989227 51.68 0.50421 51.621 51.435 51.939 -0.058918 66 24 4 0 0 0 0.016115 2 28029 27922;28029 67.413 41.072 1 34891000 15346 7918 10439 10644 18477;18478 18478 0.0014553307156575102 GAAGVHFIY 9 Unmodified _GAAGVHFIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7417297363281 2 467.742702 933.470852 0.79873 0.0003736 -0.32339 -0.00015126 0.47535 0.00022234 467.742484975229 57.125 0.76063 51.148 50.859 51.62 -5.9769 124 43 4 0 0 0 0.047696 3 36346 36346;36481;36605 45.75 19.409 1 1211400000 15347 7918 10439 10644 18479;18480;18481 18479 0.0014553307156575102 GAAGVHFIY 9 Unmodified _GAAGVHFIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 934.4769897460938 1 934.478128 933.470852 0.90497 0.00084567 -1.202 -0.0011232 -0.29698 -0.00027753 934.4766322874078 57.094 0.38718 51.117 50.957 51.345 -5.9769 41 22 2 0 0 0 0.016115 2 36549 36418;36549 67.413 35.296 1 49488000 15348 7918 10439 10644 18482;18483 18483 0.0014553307156575102 GAALFRQAL 9 Unmodified _GAALFRQAL_ 0 0 0 REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF REV__ENST00000260056.6_1_11:82708357-82745471:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7767333984375 2 473.777077 945.5396 NaN NaN NaN NaN NaN NaN NaN 31.425 1 31.425 30.925 31.925 0 0 0 0 0.57317 1 16368 16368 13.508 3.3245 1 + 15349 24953 10440 10645 18484 18484 0.06465197371267095 GAALLNCVQF 10 Unmodified _GAALLNCVQF_ 0 0 0 ENST00000394249.7_1_15:91509410-91509812:-|nuORF ENST00000394249.7_1_15:91509410-91509812:-|nuORF ENST00000394249.7_1_15:91509410-91509812:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.260009765625 2 518.268227 1034.5219 0.22622 0.00011724 0.12027 6.2333E-05 0.34649 0.00017957 518.2683180729884 48.882 0.62878 48.511 48.335 48.963 -0.37172 99 31 5 0 0 0 0.65502 1 26496 26496 7.9102 1.187 1 65740000 15350 12732 10441 10646 18485 18485 0.006021140541179193 GAAPAAYD 8 Unmodified _GAAPAAYD_ 0 0 0 ENSG00000130005|ENST00000252288|GAMT;nc|ENSG00000130005|Q14353-2|GAMT ENSG00000130005|ENST00000252288|GAMT ENSG00000130005|ENST00000252288|GAMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.1689453125 2 368.169036 734.323519 0.86974 0.00032021 -0.54574 -0.00020093 0.32399 0.00011928 368.16884448996063 66.029 0.41506 66.039 65.768 66.183 0.0095596 35 20 2 0 0 0 0.80975 1 36254 36254 0.79363 0 1 10535000 15351 4171 10442 10647 18486 18486 -0.0542698353325477 GAAPQELLIY 10 Unmodified _GAAPQELLIY_ 0 0 0 ENST00000588131.1_1_17:57785078-57812835:+|nuORF ENST00000588131.1_1_17:57785078-57812835:+|nuORF ENST00000588131.1_1_17:57785078-57812835:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7933959960938 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 64.852 1 64.852 64.352 65.352 0 0 0 0 0.59691 1 36172 36172 21.537 2.28 1 15352 15644 10443 10648 18487 18487 0.0418660975747116 GAARYRLAL 9 Unmodified _GAARYRLAL_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.79541015625 2 495.795801 989.577048 0.20608 0.00010218 0.50126 0.00024852 0.70735 0.0003507 495.7958466692895 38.144 0.21761 38.161 38.048 38.265 0.01704 21 9 3 0 0 0 0.087258 1 20273 20273 36.044 16.605 1 3916600 15353 755 10444 10649 18488 18488 0.08184288636869042 GAASRGRPY 9 Unmodified _GAASRGRPY_ 0 0 0 REV__ENST00000572694.1_1_17:3846802-3848605:-|nuORF REV__ENST00000572694.1_1_17:3846802-3848605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.745361328125 2 467.746308 933.478063 0.65586 0.00030678 -0.6899 -0.0003227 -0.034031 -1.5918E-05 467.7458692687629 51.612 0.66991 51.612 51.326 51.996 0 90 30 4 0 0 0 0.25681 1 28402 28402 19.257 0 1 145980000 + 15354 25409 10445 10650 18489 18489 0.008662656719934603 GAAVNLVIY 9 Unmodified _GAAVNLVIY_ 0 0 0 REV__ENSG00000180694|ENST00000458549|TMEM64 REV__ENSG00000180694|ENST00000458549|TMEM64 MULTI-MSMS AL20221201_MKP_PDAC_01 4 919.5274658203125 1 919.524744 918.517468 0.84931 0.00078096 3.6331 0.0033407 4.4824 0.0041216 919.5276392517935 71.888 0.28697 65.712 65.573 65.86 -6.1757 29 16 2 0 0 0 0.070838 1 46983 46983 39.957 7.6518 1 39140000 + 15355 23163 10446 10651 18490 18490 0.05494972902852169 GACAEAHP 8 Unmodified _GACAEAHP_ 0 0 0 REV__ENST00000543014.1_1_17:27064475-27064643:+|nuORF REV__ENST00000543014.1_1_17:27064475-27064643:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1598815917969 2 378.160688 754.306823 NaN NaN NaN NaN NaN NaN NaN 45.151 1 45.151 44.651 45.651 0 0 0 0 0.97444 1 24597 24597 5.2307 0 1 + 15356 28628 10447 10652 18491 18491 -0.08015807690844667 GADALQRCR 9 Unmodified _GADALQRCR_ 0 0 0 ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2507934570312 2 495.2509 988.487247 NaN NaN NaN NaN NaN NaN NaN 87.62 1 87.62 87.12 88.12 0 0 0 0 0.76439 1 48514 48514 7.2892 0 1 15357 12962 10448 10653 18492 18492 -0.007457090339926253 GADAWCLL 8 Unmodified _GADAWCLL_ 0 0 0 REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7032775878906 2 424.702189 847.389824 0.50489 0.00021443 0.089056 3.7822E-05 0.59395 0.00025225 424.7024850992167 53.918 0.30289 53.918 53.748 54.051 0 32 13 3 0 0 0 0.5953 1 29886 29886 26.341 26.341 1 6947000 + 15358 17786 10449 10654 18493 18493 -0.039974909628540445 GADAWCLL 8 Unmodified _GADAWCLL_ 0 0 0 REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.70166015625 2 424.702189 847.389824 0.1158 4.9179E-05 -0.58644 -0.00024906 -0.47065 -0.00019988 424.7019548119306 54.36 0.31738 53.893 53.727 54.044 -0.46664 35 16 3 0 0 0 0.78849 1 29506 29506 9.3474 9.3474 1 11472000 + 15359 17786 10449 10654 18494 18494 -0.039974909628540445 GADAWCLL 8 Unmodified _GADAWCLL_ 0 0 0 REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 424.702189 847.389824 0.50489 0.00021443 0.089056 3.7822E-05 0.59395 0.00025225 424.7024850992167 53.918 0.30289 53.918 53.748 54.051 0 0.01212 0.00042188 NaN 26.341 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6947000 + 15360 17786 10449 10654 -0.039974909628540445 GADAWCLL 8 Unmodified _GADAWCLL_ 0 0 0 REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF REV__ENST00000556686.1_1_14:52473253-52474606:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 424.702189 847.389824 0.1158 4.9179E-05 -0.58644 -0.00024906 -0.47065 -0.00019988 424.7019548119306 54.36 0.31738 53.893 53.727 54.044 -0.46664 -0.01212 -0.00015189 NaN 26.341 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 11472000 + 15361 17786 10449 10654 -0.039974909628540445 GADDLVLTL 9 Unmodified _GADDLVLTL_ 0 0 0 ENST00000495848.1_1_1:201979803-201981353:+|nuORF;ELF3|p.S209*|1|0.08|ENSG00000163435|chr1:202012967-202013007|TCCCACTCCTCAGACTCCGGTGGAAGTGACGTGGACCTGGA/-|frameshift_variant;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3;ENST00000498017.1_1_1:201979803-201980477:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 916.4987182617188 1 916.498589 915.491313 0.0653 5.9848E-05 0.824 0.0007552 0.8893 0.00081505 916.4991838108352 80.586 0.24193 80.586 80.43 80.672 0 15 9 2 0 0 0 0.30562 1 44702 44702 16.942 3.4344 1 647350 15362 245 10450 10655 18495 18495 0.030186589406980602 GADHHEANEY 10 Unmodified _GADHHEANEY_ 0 0 0 REV__ENSG00000126822|ENST00000247226|PLEKHG3 REV__ENSG00000126822|ENST00000247226|PLEKHG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.72705078125 2 571.728509 1141.44246 NaN NaN NaN NaN NaN NaN NaN 20.497 1 20.497 19.997 20.997 0 0 0 0 0.99897 1 10317 10317 0.45834 0 1 + 15363 19561 10451 10656 18496 18496 -0.1225986136632855 GADNWQLHSF 10 Unmodified _GADNWQLHSF_ 0 0 0 REV__ENSG00000153292|ENST00000371253|ADGRF1 REV__ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2724609375 2 587.767437 1173.52032 0.75013 0.0004409 1.5497 0.00091084 2.2998 0.0013517 588.2717161723498 80.272 0.38483 74.097 73.893 74.278 -6.1757 35 22 2 0 0 0 0.46514 1 52594 52594 18.146 5.6148 1 13916000 + 15364 21167 10452 10657 18497 18497 -0.05949803710291235 GADQTTLLY 9 Unmodified _GADQTTLLY_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2484741210938 2 491.248015 980.481476 0.69941 0.00034358 -0.85569 -0.00042036 -0.15628 -7.6771E-05 491.24764307196034 51.123 0.35908 51.123 50.919 51.278 0 31 17 2 0 0 0 0.23158 1 28267 28267 20.454 1.1966 1 11806000 15365 1160 10453 10658 18498 18498 -0.009545290646542526 GADRYTMRSPV 11 Unmodified _GADRYTMRSPV_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MSMS AL20221201_MKP_PDAC_01 4 418.2074279785156 3 418.208278 1251.60301 NaN NaN NaN NaN NaN NaN NaN 15.223 1 12.696 12.196 13.196 -2.5273 0 0 0 0.93933 1 7791 7791 1.2148 0.588 1 15366 9754 10454 10659 18499 18499 -0.012732299737990616 GADSGNGPESL 11 Unmodified _GADSGNGPESL_ 0 0 0 REV__ENSG00000122971|ENST00000242592|ACADS REV__ENSG00000122971|ENST00000242592|ACADS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2181701660156 2 502.219985 1002.42542 NaN NaN NaN NaN NaN NaN NaN 85.119 1 84.618 84.118 85.118 -0.5015 0 0 0 0.93933 1 46574 46574 2.9952 0.10602 1 + 15367 19366 10455 10660 18500 18500 -0.07569781972131295 GAEFRPGACL 10 Unmodified _GAEFRPGACL_ 0 0 0 ENST00000526183.5_1_8:145724106-145726142:+|nuORF ENST00000526183.5_1_8:145724106-145726142:+|nuORF ENST00000526183.5_1_8:145724106-145726142:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7509155273438 2 510.750201 1019.48585 0.15934 8.1384E-05 0.63895 0.00032634 0.79829 0.00040773 510.7504562038252 57.911 0.71754 51.884 51.666 52.383 -6.0275 76 39 3 0 0 0 0.18021 1 36975 36975 36.127 3.8215 1 65704000 15368 14813 10456 10661 18501 18501 -0.023113431227557157 GAEFSTSF 8 Unmodified _GAEFSTSF_ 0 0 0 ENST00000538304.1_1_12:8540468-8549057:-|nuORF ENST00000538304.1_1_12:8540468-8549057:-|nuORF ENST00000538304.1_1_12:8540468-8549057:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.1873168945312 2 423.187426 844.360298 NaN NaN NaN NaN NaN NaN NaN 87.666 1 87.161 86.661 87.661 -0.50423 0 0 0 0.93066 1 47953 47953 14.582 5.2343 1 15369 15004 10457 10662 18502 18502 -0.0681073170730997 GAEGKGLF 8 Unmodified _GAEGKGLF_ 0 0 0 nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;SAMD11|p.V545Rfs*3|1|0.04|ENSG00000187634|chr1:943319-943320|-/A|frameshift_variant;ENSG00000187634|ENST00000616016|SAMD11 nc|ENSG00000187634|Q96NU1-1|SAMD11 nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.7088928222656 2 389.708328 777.402104 1.1777 0.00045894 0.19976 7.7849E-05 1.3774 0.00053679 389.7082341242004 57.76 0.44442 51.732 51.443 51.888 -6.0275 40 24 2 0 0 0 0.37649 1 36985 36985 46.921 2.5139 1 41434000 15370 9575 10458 10663 18503 18503 0.004498687718637484 GAEMHGLCQF 10 Unmodified _GAEMHGLCQF_ 0 0 0 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7342529296875 2 546.733694 1091.45284 0.1501 8.2064E-05 0.62055 0.00033927 0.77065 0.00042134 546.7336765935598 49.014 0.40717 49.014 48.828 49.236 0 54 19 4 0 0 0 0.27276 1 26900 26900 29.082 3.6823 1 41253000 15371 16215 10459 10664 18504 18504 -0.08923293237080543 GAEMLGAL 8 Unmodified _GAEMLGAL_ 0 0 0 REV__nc|ENSG00000158488|P15812-13|CD1E REV__nc|ENSG00000158488|P15812-13|CD1E MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1962890625 2 381.196739 760.378925 1.5855 0.00060437 -1.694 -0.00064574 -0.10853 -4.1369E-05 381.19625809058846 55.165 0.40954 49.244 49.016 49.426 -5.9211 55 25 3 0 0 0 0.50586 2 35008 35008;35153 34.187 13.316 1 35324000 + 15372 21435 10460 10665 18505;18506 18505 -0.010848933371221392 GAEPSCIK 8 Unmodified _GAEPSCIK_ 0 0 0 REV__ENSG00000132446|ENST00000359202|FTHL17 REV__ENSG00000132446|ENST00000359202|FTHL17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7000122070312 2 402.699646 803.384739 NaN NaN NaN NaN NaN NaN NaN 86.464 1 86.523 86.023 87.023 0.05822 0 0 0 0.93066 1 48006 48006 14.582 2.0501 1 + 15373 19853 10461 10666 18507 18507 -0.024817948254622024 GAEVDSMYNL 10 Unmodified _GAEVDSMYNL_ 0 0 0 REV__ENSG00000072682|ENST00000360568|P4HA2 REV__ENSG00000072682|ENST00000360568|P4HA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2670288085938 2 549.742239 1097.46993 0.44042 0.00024212 -2.7317 -0.0015017 -2.2913 -0.0012596 549.7401240391114 55.571 0.26838 55.093 54.945 55.213 -0.47798 16 12 2 0 0 0 0.20941 1 30122 30122 20.454 0 1 715380 + 15374 17520 10462 10667 18508 18508 -0.07491094150304889 GAEVDSMYNL 10 Unmodified _GAEVDSMYNL_ 0 0 0 REV__ENSG00000072682|ENST00000360568|P4HA2 REV__ENSG00000072682|ENST00000360568|P4HA2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 549.742239 1097.46993 0.1611 8.8563E-05 -2.5666 -0.001411 -2.4055 -0.0013224 549.7402244366226 55.221 0.10123 55.152 55.076 55.178 -0.068737 0.093883 0.00086511 NaN 14.838 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 567110 + 15375 17520 10462 10667 -0.07491094150304889 GAFAPRPYPP 10 Unmodified _GAFAPRPYPP_ 0 0 0 REV__ENST00000325980.9_1_10:135053443-135053821:+|nuORF REV__ENST00000325980.9_1_10:135053443-135053821:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1915588378906 3 358.190665 1071.55016 -0.5816 -0.00020832 0.58948 0.00021115 0.0078869 2.825E-06 358.5250946995451 17.028 0.10139 17.029 16.98 17.081 0.0010529 37 26 2 0 0 0 0.69377 1 8426 8426 1.7423 0 1 861530 + 15376 25554 10463 10668 18509 18509 0.017251800257099603 GAFGLLDAL 9 Unmodified _GAFGLLDAL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8;REV__chr11:17397016-17397193|98|10.91|0.38|4.84|-|ENST00000647086|ABCC8,ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 876.4839477539062 1 876.482545 875.475269 -0.13297 -0.00011654 1.459 0.0012788 1.3261 0.0011623 876.4839842637001 86.927 0.27574 86.424 86.242 86.517 -0.50318 15 10 2 0 0 0 0.53666 1 47522 47522 5.2307 0 1 502660 + 15377 16982;16771 10464 10669 18510 18510 0.032549974944686255 GAFLHRGS 8 Unmodified _GAFLHRGS_ 0 0 0 nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F nc|ENSG00000102001|O60840-5|CACNA1F nc|ENSG00000102001|O60840-5|CACNA1F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7249450683594 2 422.724844 843.435135 NaN NaN NaN NaN NaN NaN NaN 16.12 1 16.121 15.621 16.621 0.0010548 0 0 0 0.97444 1 7941 7941 0.79363 0 1 15378 2008 10465 10670 18511 18511 0.007154956145768665 GAFLRHAAL 9 Unmodified _GAFLRHAAL_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1;ENST00000562416.1_1_16:69788588-69788813:-|nuORF ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2778930664062 2 478.277244 954.539935 0.16088 7.6946E-05 0.76587 0.0003663 0.92675 0.00044324 478.2775639500339 34.227 0.18369 34.255 34.143 34.327 0.027401 14 8 2 0 0 0 0.019303 1 18052 18052 64.236 32.119 1 2101200 15379 5301 10466 10671 18512 18512 0.0608461709113044 GAGEEEVKE 9 Unmodified _GAGEEEVKE_ 0 0 0 REV__ENSG00000162728|ENST00000368088|KCNJ9 REV__ENSG00000162728|ENST00000368088|KCNJ9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.4298706054688 1 947.431632 946.424355 -0.26255 -0.00024875 -2.2801 -0.0021602 -2.5426 -0.002409 947.4299429979095 68.8 0.32182 68.8 68.656 68.978 0 28 13 3 0 0 0 0.55775 1 38409 38409 3.9444 0.3479 1 1845200 + 15380 21682 10467 10672 18513 18513 -0.05099996341039059 GAGEEEVKE 9 Unmodified _GAGEEEVKE_ 0 0 0 REV__ENSG00000162728|ENST00000368088|KCNJ9 REV__ENSG00000162728|ENST00000368088|KCNJ9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.4310913085938 1 947.431632 946.424355 -0.043196 -4.0925E-05 -2.1827 -0.0020679 -2.2259 -0.0021088 947.4296728876773 69.34 0.32121 68.861 68.653 68.974 -0.47903 24 13 3 0 0 0 0.5029 1 37861 37861 7.2892 0.56607 1 1235500 + 15381 21682 10467 10672 18514 18514 -0.05099996341039059 GAGEEEVKE 9 Unmodified _GAGEEEVKE_ 0 0 0 REV__ENSG00000162728|ENST00000368088|KCNJ9 REV__ENSG00000162728|ENST00000368088|KCNJ9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 947.431632 946.424355 -0.043196 -4.0925E-05 -2.1827 -0.0020679 -2.2259 -0.0021088 947.4296728876773 69.34 0.32121 68.861 68.653 68.974 -0.47903 0.016258 5.2062E-05 NaN 7.2892 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1235500 + 15382 21682 10467 10672 -0.05099996341039059 GAGEEHQRKL 10 Unmodified _GAGEEHQRKL_ 0 0 0 REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7960205078125 2 562.793986 1123.57342 0.66414 0.00037377 2.1518 0.001211 2.8159 0.0015848 562.7953243055387 57.164 0.34973 57.164 56.974 57.324 0 34 15 3 0 0 0 0.60623 1 31775 31775 10.824 4.6181 1 5568600 + 15383 20013 10468 10673 18515 18515 0.016575740723965282 GAGEEHQRKL 10 Unmodified _GAGEEHQRKL_ 0 0 0 REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF REV__ENST00000486327.6_1_19:47870378-47879405:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7944946289062 2 562.793986 1123.57342 NaN NaN NaN NaN NaN NaN NaN 57.571 1 57.081 56.581 57.581 -0.48974 0 0 0 0.71851 1 31289 31289 15.847 3.3156 1 + 15384 20013 10468 10673 18516 18516 0.016575740723965282 GAGKIGRM 8 Unmodified _GAGKIGRM_ 0 0 0 ENST00000472842.1_1_11:13397253-13400122:+|nuORF;nc|ENSG00000133794|O00327-4|BMAL1;nc|ENSG00000133794|O00327-9|BMAL1;nc|ENSG00000133794|O00327-1|BMAL1;nc|ENSG00000133794|O00327-7|BMAL1;nc|ENSG00000133794|O00327-8|BMAL1;ENSG00000133794|ENST00000403290|BMAL1 ENST00000472842.1_1_11:13397253-13400122:+|nuORF ENST00000472842.1_1_11:13397253-13400122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2225036621094 2 395.223623 788.432692 -0.12666 -5.0057E-05 -2.1186 -0.00083732 -2.2452 -0.00088737 395.22247452640374 35.652 0.34009 35.652 35.574 35.914 0 29 16 2 0 0 0 0.80143 1 18906 18906 5.7604 2.8712 1 2178700 15385 4533 10469 10674 18517 18517 0.030013238852461654 GAGKPGGSW 9 Unmodified _GAGKPGGSW_ 0 0 0 nc|ENSG00000101331|Q9NUG4-2|CCM2L;ENSG00000101331|ENST00000452892|CCM2L nc|ENSG00000101331|Q9NUG4-2|CCM2L nc|ENSG00000101331|Q9NUG4-2|CCM2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.4037475585938 1 816.399878 815.392602 2.407 0.0019651 3.3741 0.0027546 5.7811 0.0047197 816.4033668023429 95.755 0.18626 95.759 95.679 95.865 0.004158 9 6 2 0 0 0 0.41742 1 53196 53196 11.64 1.4569 1 1416300 15386 1945 10470 10675 18518 18518 -0.022478995136793856 GAGLDLLAP 9 Unmodified _GAGLDLLAP_ 0 0 0 REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF REV__ENST00000570817.5_1_17:79163571-79163706:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.7373352050781 2 413.737086 825.459619 NaN NaN NaN NaN NaN NaN NaN 53.933 1 53.933 53.433 54.433 0 0 0 0 0.84369 1 29919 29919 2.3027 0 1 + 15387 28973 10471 10676 18519 18519 0.039907109774162564 GAGLDVFR 8 Unmodified _GAGLDVFR_ 0 0 0 ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.7276000976562 2 417.727052 833.439552 -0.090927 -3.7982E-05 -0.46493 -0.00019421 -0.55586 -0.0002322 417.726853876461 62.111 0.34469 62.111 61.929 62.274 0 38 16 3 0 0 0 0.57045 2 34588 34588;34689 28.487 3.813 1 7784400 15388 12047 10472 10677 18520;18521 18520 0.016169600374723814 GAGLDVFR 8 Unmodified _GAGLDVFR_ 0 0 0 ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.727294921875 2 417.727052 833.439552 0.63611 0.00026572 -0.78463 -0.00032776 -0.14853 -6.2044E-05 417.72671976334084 62.562 0.33165 62.075 61.894 62.226 -0.48764 41 15 4 0 0 0 0.57045 1 34037 34037 28.487 0 1 16126000 15389 12047 10472 10677 18522 18522 0.016169600374723814 GAGLDVFR 8 Unmodified _GAGLDVFR_ 0 0 0 ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.7273254394531 2 417.727052 833.439552 0.92261 0.0003854 1.7114 0.0007149 2.634 0.0011003 417.72691670268665 68.118 0.53248 61.943 61.707 62.239 -6.1757 65 31 3 0 0 0 0.50673 1 44457 44457 34.102 1.9855 1 42336000 15390 12047 10472 10677 18523 18523 0.016169600374723814 GAGLDVFR 8 Unmodified _GAGLDVFR_ 0 0 0 ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF ENST00000352133.2_1_21:43934136-43934307:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 834.4462890625 1 834.446828 833.439552 0.66158 0.00055205 -0.3493 -0.00029147 0.31228 0.00026058 834.4463827831119 68.128 0.43288 61.952 61.737 62.17 -6.1757 40 25 2 0 0 0 0.50673 1 44480 44480 34.102 1.797 1 20101000 15391 12047 10472 10677 18524 18524 0.016169600374723814 GAGLPLMM 8 Unmodified _GAGLPLMM_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS AL20221201_MKP_PDAC_01 4 394.7948608398438 2 395.20351 788.392467 NaN NaN NaN NaN NaN NaN NaN 13.926 1 11.424 10.924 11.924 -2.5029 0 0 0 0.97444 1 7060 7060 0.79363 0 1 15392 1413 10473 10678 18525 18525 -0.010193588295351219 GAGLVIFYDFL 11 Unmodified _GAGLVIFYDFL_ 0 0 0 nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17;nc|ENSG00000159588|Q96LX7-2|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8232421875 2 607.826432 1213.63831 NaN NaN NaN NaN NaN NaN NaN 55.011 1 54.942 54.442 55.442 -0.068737 0 0 0 0.76159 1 29888 29888 13.906 3.8321 1 15393 6662 10474 10679 18526 18526 0.04003755825669941 GAGNNAHF 8 Unmodified _GAGNNAHF_ 0 0 0 REV__LAMA1|p.V2953A|1|0.18|ENSG00000101680|chr18:6943389-6943389|A/G|missense_variant REV__LAMA1|p.V2953A|1|0.18|ENSG00000101680|chr18:6943389-6943389|A/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1761169433594 2 394.177727 786.3409 NaN NaN NaN NaN NaN NaN NaN 28.068 1 28.021 27.521 28.521 -0.046408 0 0 0 0.97444 1 14480 14480 2.8892 2.0956 1 + 15394 29447 10475 10680 18527 18527 -0.06081643207573961 GAGPTKKF 8 Unmodified _GAGPTKKF_ 0 0 0 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2325134277344 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 9.3146 1 9.2231 8.7231 9.7231 -0.09156 0 0 0 0.97444 1 4561 4561 0.69038 0 1 + 15395 17240 10476 10681 18528 18528 0.039341480428561226 GAGPVLEAF 9 Unmodified _GAGPVLEAF_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A;nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000066933|B2RTY4-2|MYO9A;nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 860.4526977539062 1 860.451245 859.443968 0.84136 0.00072395 0.44774 0.00038526 1.2891 0.0011092 860.4524817426701 72.064 0.13866 65.888 65.781 65.919 -6.1757 10 7 2 0 0 0 0.013472 1 47162 47162 70.716 14.174 1 21071000 15396 1694;945 10477 10682 18529 18529 0.008624244603765874 GAGRAWGI 8 Unmodified _GAGRAWGI_ 0 0 0 REV__ENSG00000095209|ENST00000374692|TMEM38B REV__ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2136535644531 2 394.214112 786.413671 0.000225 8.8697E-08 1.0457 0.00041224 1.046 0.00041233 394.2143954795122 39.165 0.26236 38.878 38.719 38.981 -0.28687 18 11 2 0 0 0 0.80044 1 20654 20654 6.3541 0 1 3521900 + 15397 17937 10478 10683 18530 18530 0.011921105858505143 GAGRAWGI 8 Unmodified _GAGRAWGI_ 0 0 0 REV__ENSG00000095209|ENST00000374692|TMEM38B REV__ENSG00000095209|ENST00000374692|TMEM38B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.214112 786.413671 0.38834 0.00015309 1.8992 0.0007487 2.2876 0.00090179 394.2148265130047 38.85 0.39251 38.85 38.62 39.012 0 0.0041381 0.00014926 NaN 6.3541 46 17 3 NaN NaN NaN NaN 0 NaN NaN 0 10513000 + 15398 17937 10478 10683 0.011921105858505143 GAGRAWGI 8 Unmodified _GAGRAWGI_ 0 0 0 REV__ENSG00000095209|ENST00000374692|TMEM38B REV__ENSG00000095209|ENST00000374692|TMEM38B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.214112 786.413671 0.000225 8.8697E-08 1.0457 0.00041224 1.046 0.00041233 394.2143954795122 39.165 0.26236 38.878 38.719 38.981 -0.28687 0.031707 -0.00052366 NaN 6.3541 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3521900 + 15399 17937 10478 10683 0.011921105858505143 GAGRAWGI 8 Unmodified _GAGRAWGI_ 0 0 0 REV__ENSG00000095209|ENST00000374692|TMEM38B REV__ENSG00000095209|ENST00000374692|TMEM38B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 394.214112 786.413671 0.058859 2.3203E-05 1.7148 0.000676 1.7737 0.00069921 394.2146421213258 38.799 0.42319 38.81 38.538 38.962 0.011452 -0.035846 3.8596E-06 NaN 6.3541 59 20 4 NaN NaN NaN NaN 0 NaN NaN 0 62184000 + 15400 17937 10478 10683 0.011921105858505143 GAGRSESEVIA 11 Unmodified _GAGRSESEVIA_ 0 0 0 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 MSMS AL20221201_MKP_PDAC_01 4 359.1864013671875 3 359.184127 1074.53055 NaN NaN NaN NaN NaN NaN NaN 88.496 1 82.32 81.82 82.82 -6.1757 0 0 0 0.9372 1 58389 58389 2.084 0 1 15401 8721 10479 10684 18531 18531 -0.0037324077570701775 GAGRSKKH 8 Unmodified _GAGRSKKH_ 0 0 0 REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.7436218261719 2 420.743568 839.472583 1.5151 0.00063746 -0.79493 -0.00033446 0.72015 0.000303 420.7432703546335 21.478 0.29746 18.743 18.603 18.9 -2.7348 57 28 3 0 0 0 0.6895 1 11463 11463 18.135 3.5533 1 10531000 + 15402 21602 10480 10685 18532 18532 0.04642586880174804 GAGRTKAF 8 Unmodified _GAGRTKAF_ 0 0 0 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 MSMS AL20221201_MKP_PDAC_01 4 404.2272033691406 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 6.5605 1 4.0786 3.5786 4.5786 -2.482 0 0 0 0.97444 1 3315 3315 2.8892 0 1 15403 8576 10481 10686 18533 18533 0.028923797573156662 GAGRVQPR 8 Unmodified _GAGRVQPR_ 0 0 0 REV__ENST00000389857.10_1_14:91782129-91787614:-|nuORF REV__ENST00000389857.10_1_14:91782129-91787614:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.7440795898438 2 420.743568 839.472583 0.04792 2.0162E-05 1.4934 0.00062835 1.5413 0.00064851 420.7441415467155 19.168 0.15917 19.176 19.08 19.24 0.0078487 17 10 2 0 0 0 0.72953 1 9740 9740 14.582 0 1 863510 + 15404 26362 10482 10687 18534 18534 0.04642586880174804 GAGSVDMDECF 11 Unmodified _GAGSVDMDECF_ 0 0 0 REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF REV__ENST00000565793.5_1_15:79069566-79092863:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.262451171875 2 565.710082 1129.40561 0.64185 0.0003631 1.4814 0.00083804 2.1232 0.0012011 565.7111155670829 51.514 0.19147 51.514 51.369 51.561 0 12 8 2 0 0 0 0.28752 1 28392 28392 9.3831 4.0862 1 1861200 + 15405 28915 10483 10688 18535 18535 -0.15391617298769233 GAGTGDVAVVI 11 Unmodified _GAGTGDVAVVI_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.D710Afs*8|1|0.05|ENSG00000128591|chr7:128842237-128842240|GACG/-|frameshift_variant ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7162170410156 2 479.763832 957.513111 -0.21084 -0.00010115 1.4912 0.00071544 1.2804 0.00061428 479.7643337891158 31.801 0.082228 31.801 31.758 31.84 0 5 3 2 0 0 0 0.29564 1 16601 16601 9.3831 6.4939 1 317390 15406 4073 10484 10689 18536 18536 0.032654636892857525 GAGVTLNVLE 10 Unmodified _GAGVTLNVLE_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6;nc|ENSG00000167165|P19224-2|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000241635|P22309-2|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.771240234375 2 486.771657 971.528761 -0.035499 -1.728E-05 1.0532 0.00051266 1.0177 0.00049538 486.7719081346905 36.503 0.16568 36.525 36.453 36.619 0.021545 11 7 2 0 0 0 0.54684 1 19352 19352 13.906 3.8321 1 3449200 15407 10696;7581;10680;16629;10684;16628 10485 10690 18537 18537 0.041857502063294305 GAHAPLFR 8 Unmodified _GAHAPLFR_ 0 0 0 REV__ENST00000238961.8_1_10:102672683-102672890:+|nuORF REV__ENST00000238961.8_1_10:102672683-102672890:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.74365234375 2 434.743037 867.471521 NaN NaN NaN NaN NaN NaN NaN 26.151 1 23.2 22.7 23.7 -2.9511 0 0 0 0.93587 1 14378 14378 13.508 4.1604 1 + 15408 24836 10486 10691 18538 18538 0.0324837251127974 GAHFDPEVY 9 Unmodified _GAHFDPEVY_ 0 0 0 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 ENSG00000149823|ENST00000279281|VPS51 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7310180664062 2 517.732532 1033.45051 -0.26856 -0.00013904 -0.38255 -0.00019806 -0.65111 -0.0003371 517.732278671066 41.347 0.26713 41.347 41.174 41.441 0 32 12 3 0 0 0 0.052168 1 22248 22248 44.407 22.66 1 18733000 15409 6040 10487 10692 18539 18539 -0.06487682378883619 GAHGIIVVY 9 Unmodified _GAHGIIVVY_ 0 0 0 ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A ENSG00000174903|ENST00000311481|RAB1B ENSG00000174903|ENST00000311481|RAB1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7662963867188 2 464.766178 927.517802 0.74215 0.00034492 -0.31699 -0.00014732 0.42516 0.0001976 464.76602120561006 51.612 0.41168 51.612 51.412 51.823 0 57 18 4 0 0 0 0.085487 2 28457 28457;28575 36.466 8.2929 1 44793000 15410 5008 10488 10693 18540;18541 18540 0.05114392622704145 GAHGIIVVY 9 Unmodified _GAHGIIVVY_ 0 0 0 ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A ENSG00000174903|ENST00000311481|RAB1B ENSG00000174903|ENST00000311481|RAB1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7662353515625 2 464.766178 927.517802 0.33986 0.00015796 -0.064093 -2.9788E-05 0.27577 0.00012817 464.76610811222463 52.056 0.52614 51.622 51.437 51.964 -0.43367 84 26 5 0 0 0 0.085487 2 28035 28035;28136 36.466 8.2929 1 159270000 15411 5008 10488 10693 18542;18543 18542 0.05114392622704145 GAHGIIVVY 9 Unmodified _GAHGIIVVY_ 0 0 0 ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A ENSG00000174903|ENST00000311481|RAB1B ENSG00000174903|ENST00000311481|RAB1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7667236328125 2 464.766178 927.517802 0.10392 4.8297E-05 0.75446 0.00035065 0.85838 0.00039895 464.7665785689292 51.729 0.45823 51.67 51.396 51.854 -0.058918 56 22 4 0 0 0 0.085487 2 27959 27959;28066 36.466 8.2929 1 12251000 15412 5008 10488 10693 18544;18545 18544 0.05114392622704145 GAHGIIVVY 9 Unmodified _GAHGIIVVY_ 0 0 0 ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A ENSG00000174903|ENST00000311481|RAB1B ENSG00000174903|ENST00000311481|RAB1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7662353515625 2 464.766178 927.517802 0.94493 0.00043917 -0.16621 -7.7249E-05 0.77872 0.00036192 464.76605168653487 57.355 0.55649 51.327 51.035 51.592 -6.0275 95 30 4 0 0 0 0.085487 3 36521 36521;36643;36768 36.466 8.2929 1 273500000 15413 5008 10488 10693 18546;18547;18548 18546 0.05114392622704145 GAHLDLSAF 9 Unmodified _GAHLDLSAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3470835-3470958:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7372741699219 2 465.737617 929.460681 0.5429 0.00025285 -0.47091 -0.00021932 0.071987 3.3527E-05 465.7376478163823 58.695 0.31789 58.695 58.511 58.829 0 23 13 2 0 0 0 0.28047 1 32753 32753 18.135 1.1927 1 2414700 15414 9149 10489 10694 18549 18549 -0.006870746536719707 GAHLDLSAF 9 Unmodified _GAHLDLSAF_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF;ENST00000446317.1_1_20:3470835-3470958:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7374877929688 2 465.737617 929.460681 0.96441 0.00044916 -0.052794 -2.4588E-05 0.91161 0.00042457 465.7374852150639 64.838 0.28345 58.662 58.54 58.823 -6.1757 23 15 2 0 0 0 0.03327 1 42047 42047 53.576 5.2297 1 10006000 15415 9149 10489 10694 18550 18550 -0.006870746536719707 GAHLVNEVIL 10 Unmodified _GAHLVNEVIL_ 0 0 0 ENST00000514158.5_3_5:88236702-88237014:+|nuORF ENST00000514158.5_3_5:88236702-88237014:+|nuORF ENST00000514158.5_3_5:88236702-88237014:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8096923828125 2 532.808574 1063.60259 0.79286 0.00042244 -0.081063 -4.3191E-05 0.7118 0.00037925 532.8085860062242 82.874 2.1995 76.698 75.637 77.837 -6.1757 181 120 2 0 0 0 0.33553 1 55001 55001 25.399 2.2509 1 29459000 15416 14649 10490 10695 18551 18551 0.07333718368658992 GAHRIILF 8 Unmodified _GAHRIILF_ 0 0 0 REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7831420898438 2 463.782162 925.549771 -0.45095 -0.00020914 1.1514 0.000534 0.70046 0.00032486 463.7827244174357 32.774 0.26909 32.774 32.639 32.908 0 23 13 2 0 0 0 0.80975 1 17125 17125 0.79363 0 1 2245000 + 15417 27667 10491 10696 18552 18552 0.0840180509652555 GAHRIILF 8 Unmodified _GAHRIILF_ 0 0 0 REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF REV__ENST00000480171.7_1_2:159519375-159537186:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 463.782162 925.549771 -0.45095 -0.00020914 1.1514 0.000534 0.70046 0.00032486 463.7827244174357 32.774 0.26909 32.774 32.639 32.908 0 0.0032166 -1.1441E-05 NaN 0.79363 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2245000 + 15418 27667 10491 10696 0.0840180509652555 GAHSWAWGW 9 Unmodified _GAHSWAWGW_ 0 0 0 ENST00000368705.2_1_1:153581560-153581704:-|nuORF ENST00000368705.2_1_1:153581560-153581704:-|nuORF ENST00000368705.2_1_1:153581560-153581704:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8316040039062 3 353.159476 1056.4566 NaN NaN NaN NaN NaN NaN NaN 73.361 1 73.361 72.861 73.861 0 0 0 0 0.85359 1 40840 40840 1.0715 0 1 15419 12282 10492 10697 18553 18553 -0.06937119356734911 GAHTFTHTH 9 Unmodified _GAHTFTHTH_ 0 0 0 REV__ENST00000355387.6_1_1:45116522-45116732:+|nuORF REV__ENST00000355387.6_1_1:45116522-45116732:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7361755371094 2 504.73594 1007.45733 -0.11611 -5.8605E-05 -0.02859 -1.443E-05 -0.1447 -7.3035E-05 504.735997548278 18.471 0.16516 18.471 18.391 18.556 0 38 19 2 0 0 0 0.43463 1 9154 9154 10.824 0.75 1 3851400 + 15420 25807 10493 10698 18554 18554 -0.04610324707687141 GAHVQKVNGT 10 Unmodified _GAHVQKVNGT_ 0 0 0 REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.7747192382812 2 505.772522 1009.53049 NaN NaN NaN NaN NaN NaN NaN 44.184 1 39.332 38.832 39.832 -4.852 0 0 0 0.068442 1 26940 26940 53.833 5.4869 1 + 15421 27515 10494 10699 18555 18555 0.026108040149551925 GAKGQPHL 8 Unmodified _GAKGQPHL_ 0 0 0 ENST00000545508.1_1_12:127236720-127236858:-|nuORF ENST00000545508.1_1_12:127236720-127236858:-|nuORF ENST00000545508.1_1_12:127236720-127236858:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.22607421875 2 404.22722 806.439886 -1.2071 -0.00048795 0.24987 0.000101 -0.95725 -0.00038695 404.22728531362 32.63 0.32976 32.63 32.481 32.811 0 49 17 4 0 0 0 0.44122 1 17016 17016 40.449 2.2974 1 109580000 15422 15093 10495 10700 18556 18556 0.02892379757327035 GAKITNNLFQ 10 Unmodified _GAKITNNLFQ_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.8082275390625 2 553.303655 1104.59276 0.98014 0.00054231 0.77634 0.00042955 1.7565 0.00097187 553.3035667413324 46.022 0.43574 46.022 45.838 46.274 0 75 20 5 0 0 0 0.27276 1 25208 25208 29.082 0.59474 1 39371000 15423 1724 10496 10701 18557 18557 0.04464530363270569 GAKKGYLW 8 Unmodified _GAKKGYLW_ 0 0 0 REV__ENST00000394464.6_1_5:142660443-142660566:-|nuORF REV__ENST00000394464.6_1_5:142660443-142660566:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7616577148438 2 461.760895 921.507237 0.31167 0.00014392 0.91769 0.00042376 1.2294 0.00056767 461.7613340841554 73.224 0.54314 73.266 73.108 73.651 0.041725 57 24 3 0 0 0 0.71616 1 40413 40413 15.768 0 1 12896000 + 15424 26447 10497 10702 18558 18558 0.04334409968271302 GAKPHKCP 8 Unmodified _GAKPHKCP_ 0 0 0 ENSG00000122386|ENST00000219091|ZNF205 ENSG00000122386|ENST00000219091|ZNF205 ENSG00000122386|ENST00000219091|ZNF205 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.1852722167969 2 419.223623 836.432692 0.33486 0.00014038 0.88331 0.0003703 1.2182 0.00051068 419.2240298197903 25.98 0.24953 23.029 22.88 23.13 -2.9511 29 16 2 0 0 0 8.7369 1 14269 14269 14.582 0 1 12400000 15425 3634 10498 10703 18559 18559 0.007933238852501745 GAKQAISY 8 Unmodified _GAKQAISY_ 0 0 0 REV__nc|ENSG00000162813|O95861-4|BPNT1 REV__nc|ENSG00000162813|O95861-4|BPNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4476928710938 1 837.446494 836.439217 -0.050289 -4.2115E-05 -0.25295 -0.00021183 -0.30324 -0.00025394 837.4462466874661 37.489 0.21661 37.489 37.369 37.586 0 22 11 2 0 0 0 0.46494 1 19906 19906 38.151 0 1 5353600 + 15426 21695 10499 10704 18560 18560 0.014455403176043546 GAKQAISY 8 Unmodified _GAKQAISY_ 0 0 0 REV__nc|ENSG00000162813|O95861-4|BPNT1 REV__nc|ENSG00000162813|O95861-4|BPNT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.4454345703125 1 837.446494 836.439217 0.67999 0.00056945 -1.0818 -0.00090598 -0.40185 -0.00033652 837.4458197471984 43.267 0.42172 38.502 38.318 38.74 -4.7648 36 29 2 0 0 0 0.46494 1 26301 26301 38.151 0 1 16542000 + 15427 21695 10499 10704 18561 18561 0.014455403176043546 GAKQAISY 8 Unmodified _GAKQAISY_ 0 0 0 REV__nc|ENSG00000162813|O95861-4|BPNT1 REV__nc|ENSG00000162813|O95861-4|BPNT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 837.446494 836.439217 -0.050289 -4.2115E-05 -0.25295 -0.00021183 -0.30324 -0.00025394 837.4462466874661 37.489 0.21661 37.489 37.369 37.586 0 0 0 NaN 38.151 22 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5353600 + 15428 21695 10499 10704 0.014455403176043546 GALAKPTE 8 Unmodified _GALAKPTE_ 0 0 0 REV__ENST00000262888.7_1_19:44280762-44285041:-|nuORF REV__ENST00000262888.7_1_19:44280762-44285041:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.7223205566406 2 393.721436 785.428318 NaN NaN NaN NaN NaN NaN NaN 32.867 1 32.867 32.367 33.367 0 0 0 0 0.97444 1 17200 17200 2.8892 0 1 + 15429 25035 10500 10705 18562 18562 0.02702137943344951 GALAKPTE 8 Unmodified _GALAKPTE_ 0 0 0 REV__ENST00000262888.7_1_19:44280762-44285041:-|nuORF REV__ENST00000262888.7_1_19:44280762-44285041:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.7229309082031 2 393.721436 785.428318 NaN NaN NaN NaN NaN NaN NaN 32.954 1 32.795 32.295 33.295 -0.15918 0 0 0 0.97444 1 17176 17176 2.8892 0 1 + 15430 25035 10500 10705 18563 18563 0.02702137943344951 GALDVTIMY 9 Oxidation (M) _GALDVTIM(Oxidation (M))Y_ GALDVTIM(1)Y GALDVTIM(64)Y 0 0 1 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MSMS AL20221201_MKP_PDAC_01 4 499.7477722167969 2 499.746793 997.479033 NaN NaN NaN NaN NaN NaN NaN 71.4 1 65.224 64.724 65.724 -6.1757 0 0 0 0.036587 1 46667 46667 63.563 19.156 1 15431 9379 10501 10706 18564 18564 1541 -0.019807007939675714 GALERPFPP 9 Unmodified _GALERPFPP_ 0 0 0 REV__ENST00000591881.5_1_19:5950841-5951586:-|nuORF REV__ENST00000591881.5_1_19:5950841-5951586:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2684326171875 2 492.269084 982.523616 0.59629 0.00029354 -1.0636 -0.00052359 -0.46734 -0.00023006 492.2684399903209 44.636 0.35283 39.784 39.582 39.935 -4.852 47 28 2 0 0 0 0.32871 1 27321 27321 15.847 0 1 18858000 + 15432 17149 10502 10707 18565 18565 0.03165491134370768 GALGGQRW 8 Unmodified _GALGGQRW_ 0 0 0 ENST00000525340.5_1_11:62340970-62341174:-|nuORF ENST00000525340.5_1_11:62340970-62341174:-|nuORF ENST00000525340.5_1_11:62340970-62341174:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7249450683594 2 422.724844 843.435135 -0.61967 -0.00026195 -0.026357 -1.1142E-05 -0.64603 -0.00027309 422.7250137494539 15.894 0.21464 15.894 15.753 15.967 0 85 47 2 0 0 0 0.76859 1 7668 7668 11.114 0.93107 1 925540 15433 14796 10503 10708 18566 18566 0.007154956145541291 GALGLWPV 8 Unmodified _GALGLWPV_ 0 0 0 ENST00000316793.7_1_3:8809915-8810243:-|nuORF ENST00000316793.7_1_3:8809915-8810243:-|nuORF ENST00000316793.7_1_3:8809915-8810243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7370300292969 2 406.736889 811.459225 0.94942 0.00038617 0.26842 0.00010918 1.2178 0.00049534 406.73683515968514 80.209 0.45528 79.72 79.428 79.884 -0.48932 27 17 2 0 0 0 0.80044 1 43989 43989 6.3541 3.4649 1 891210 15434 11742 10504 10709 18567 18567 0.045953360482258176 GALKLFPH 8 Unmodified _GALKLFPH_ 0 0 0 REV__ENSG00000101349|ENST00000353224|PAK5 REV__ENSG00000101349|ENST00000353224|PAK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7618408203125 2 441.763438 881.512323 0.055213 2.4391E-05 -1.0138 -0.00044785 -0.95857 -0.00042346 441.7629637033405 51.344 0.29379 51.29 51.127 51.421 -0.053871 25 14 2 0 0 0 0.57408 1 27769 27769 28.173 1.832 1 4957000 + 15435 18162 10505 10710 18568 18568 0.06682713830878129 GALLFRVSSF 10 Unmodified _GALLFRVSSF_ 0 0 0 chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|84 chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|84 chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|84 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.274169921875 2 548.811116 1095.60768 0.41431 0.00022738 -0.26145 -0.00014349 0.15286 8.3894E-05 548.8113839645537 45.048 0.49677 40.196 39.905 40.401 -4.852 59 32 3 0 0 0 0.22667 1 27437 27437 10.824 0 1 32265000 15436 103 10506 10711 18569 18569 0.0637002223129457 GALTNFRQYL 10 Unmodified _GALTNFRQYL_ 0 0 0 REV__ENSG00000088808|ENST00000202556|PPP1R13B REV__ENSG00000088808|ENST00000202556|PPP1R13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8800964355469 3 394.880379 1181.61931 0.80951 0.00031966 -0.047154 -1.862E-05 0.76235 0.00030104 395.2147424475603 44.633 0.45756 39.781 39.517 39.975 -4.852 78 36 3 0 0 0 0.52888 1 27310 27310 8.9762 1.0308 1 52585000 + 15437 17810 10507 10712 18570 18570 0.03576219254637181 GALVKEALL 9 Unmodified _GALVKEALL_ 0 0 0 REV__ENST00000476196.5_1_20:57478538-57485881:+|nuORF REV__ENST00000476196.5_1_20:57478538-57485881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2900390625 2 457.289485 912.564418 0.36147 0.0001653 0.68216 0.00031195 1.0436 0.00047724 457.28981179092654 87.27 0.29218 86.766 86.608 86.9 -0.50423 17 11 2 0 0 0 0.53666 1 47726 47726 5.2307 0 1 451130 + 15438 17789 10508 10713 18571 18571 0.10463832454001931 GALVKEALL 9 Unmodified _GALVKEALL_ 0 0 0 REV__ENST00000476196.5_1_20:57478538-57485881:+|nuORF REV__ENST00000476196.5_1_20:57478538-57485881:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.289485 912.564418 0.36147 0.0001653 0.68216 0.00031195 1.0436 0.00047724 457.28981179092654 87.27 0.29218 86.766 86.608 86.9 -0.50423 0 0 NaN 5.2307 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 451130 + 15439 17789 10508 10713 0.10463832454001931 GAMAVRRVL 9 Unmodified _GAMAVRRVL_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000414406.2_1_12:20095069-20095366:+|nuORF ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7922973632812 2 486.792204 971.569854 1.2049 0.00058651 0.13213 6.432E-05 1.337 0.00065083 486.7922703467643 34.136 0.48507 30.15 29.894 30.379 -3.9853 56 26 3 0 0 0 0.052168 2 19557 19557;19680 44.407 6.2558 1 28593000 15440 3515 10509 10714 18572;18573 18572 0.08293232764822278 GAMGIILVY 9 Unmodified _GAMGIILVY_ 0 0 0 ENSG00000143545|ENST00000368575|RAB13 ENSG00000143545|ENST00000368575|RAB13 ENSG00000143545|ENST00000368575|RAB13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7649841308594 2 468.764789 935.515025 0.71341 0.00033442 -0.83363 -0.00039078 -0.12022 -5.6356E-05 468.7648124147768 99.552 0.15603 93.376 93.276 93.432 -6.1757 20 9 3 0 0 0 0.085487 1 66328 66328 36.466 4.0125 1 48285000 15441 5523 10510 10715 18574 18574 0.04468801173550219 GAMGIMLVY 9 Unmodified _GAMGIMLVY_ 0 0 0 ENST00000589697.1_1_19:16222732-16236504:+|nuORF;ENST00000587156.5_1_19:16222711-16238468:+|nuORF;ENSG00000084733|ENST00000264710|RAB10;nc|ENSG00000167461|P61006-2|RAB8A;ENSG00000167461|ENST00000300935|RAB8A;ENSG00000166128|ENST00000321437|RAB8B ENST00000589697.1_1_19:16222732-16236504:+|nuORF ENST00000589697.1_1_19:16222732-16236504:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7437438964844 2 477.742999 953.471446 1.1804 0.00056391 1.3476 0.0006438 2.5279 0.0012077 477.7432340304461 95.203 1.0249 89.028 88.496 89.521 -6.1757 91 59 2 0 0 0 0.1492 1 63116 63116 28.173 5.7206 1 7857400 15442 1396 10511 10716 18575 18575 -0.007151315952455661 GAMSSYLLII 10 Unmodified _GAMSSYLLII_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF;ENST00000554072.1_1_14:61451496-61500746:+|nuORF;ENST00000525723.6_1_14:61453838-61500746:+|nuORF;ENST00000528350.5_1_14:61453838-61504361:+|nuORF ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2953491210938 2 534.293911 1066.57327 0.48378 0.00025848 1.2744 0.0006809 1.7582 0.00093938 534.2952083961387 58.927 0.478 58.866 58.607 59.085 -0.060722 68 23 4 0 0 0 0.33553 1 32184 32184 25.399 3.6527 1 9584800 15443 5202 10512 10717 18576 18576 0.042644380281672056 GANAALLVY 9 Unmodified _GANAALLVY_ 0 0 0 ENST00000477149.5_1_2:238486577-238486817:-|nuORF;ENSG00000124839|ENST00000264601|RAB17 ENST00000477149.5_1_2:238486577-238486817:-|nuORF ENST00000477149.5_1_2:238486577-238486817:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.494873046875 1 891.493444 890.486168 -0.03715 -3.3119E-05 -0.016219 -1.4459E-05 -0.053369 -4.7578E-05 891.4933217638322 62.112 0.27927 62.112 61.951 62.23 0 19 12 2 0 0 0 0.026094 1 34606 34606 57.471 17.023 1 2106200 15444 3823 10513 10718 18577 18577 0.03654399868753444 GANAALLVY 9 Unmodified _GANAALLVY_ 0 0 0 ENST00000477149.5_1_2:238486577-238486817:-|nuORF;ENSG00000124839|ENST00000264601|RAB17 ENST00000477149.5_1_2:238486577-238486817:-|nuORF ENST00000477149.5_1_2:238486577-238486817:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 891.4923706054688 1 891.493444 890.486168 -0.029155 -2.5991E-05 0.50308 0.00044849 0.47393 0.0004225 891.4933863547685 62.565 0.26981 62.077 61.936 62.206 -0.48764 19 12 2 0 0 0 0.042911 1 34068 34068 48.346 10.195 1 2166000 15445 3823 10513 10718 18578 18578 0.03654399868753444 GANAALLVY 9 Unmodified _GANAALLVY_ 0 0 0 ENST00000477149.5_1_2:238486577-238486817:-|nuORF;ENSG00000124839|ENST00000264601|RAB17 ENST00000477149.5_1_2:238486577-238486817:-|nuORF ENST00000477149.5_1_2:238486577-238486817:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 891.4931640625 1 891.493444 890.486168 0.18649 0.00016626 0.78385 0.0006988 0.97034 0.00086505 891.4942914360848 69.429 0.33396 63.254 63.153 63.487 -6.1757 22 17 2 0 0 0 0.026094 1 45457 45457 57.471 3.8958 1 11653000 15446 3823 10513 10718 18579 18579 0.03654399868753444 GANIQAAEQL 10 Unmodified _GANIQAAEQL_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7645568847656 2 507.764363 1013.51417 0.70189 0.00035639 -1.0021 -0.00050883 -0.30021 -0.00015244 507.7646701049611 49.351 0.45434 49.351 49.128 49.582 0 42 20 3 0 0 0 0.1942 1 27149 27149 34.402 7.5181 1 6412000 + 15447 23822 10514 10719 18580 18580 0.007956780581821477 GANIQAAEQL 10 Unmodified _GANIQAAEQL_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.764363 1013.51417 0.70189 0.00035639 -1.0021 -0.00050883 -0.30021 -0.00015244 507.7646701049611 49.351 0.45434 49.351 49.128 49.582 0 0 0 NaN 34.402 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 6412000 + 15448 23822 10514 10719 0.007956780581821477 GANPWRCD 8 Unmodified _GANPWRCD_ 0 0 0 nc|ENSG00000203618|P13224|GP1BB;nc|ENSG00000203618|P13224-2|GP1BB nc|ENSG00000203618|P13224|GP1BB nc|ENSG00000203618|P13224|GP1BB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.6984558105469 2 459.697969 917.381385 0.3746 0.0001722 0.6825 0.00031374 1.0571 0.00048595 459.6983256074232 35.632 0.3038 35.632 35.554 35.858 0 25 14 2 0 0 0 0.80722 1 18866 18866 2.3027 0 1 1729200 15449 16498 10515 10720 18581 18581 -0.08061044879468682 GANSMDDGDFL 11 Unmodified _GANSMDDGDFL_ 0 0 0 REV__nc|ENSG00000198554|O75717-2|WDHD1 REV__nc|ENSG00000198554|O75717-2|WDHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1539611816406 3 381.153728 1140.43935 NaN NaN NaN NaN NaN NaN NaN 69.277 1 69.277 68.777 69.777 0 0 0 0 0.94201 1 38600 38600 0.36667 0.13083 1 + 15450 24024 10516 10721 18582 18582 -0.1252487253534582 GAPALSAPQVY 11 Unmodified _GAPALSAPQVY_ 0 0 0 REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2847290039062 2 537.284931 1072.55531 -0.28631 -0.00015383 0.45254 0.00024314 0.16623 8.9314E-05 537.2852474221096 25.853 0.28995 25.853 25.634 25.924 0 22 13 2 0 0 0 0.6889 1 13244 13244 5.2969 0.96765 1 800040 + 15451 29201 10517 10722 18583 18583 0.021934390976412033 GAPAVEIFLI 10 Unmodified _GAPAVEIFLI_ 0 0 0 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3030395507812 2 515.302593 1028.59063 1.2571 0.00064776 0.32521 0.00016758 1.5823 0.00081534 515.3026497612706 101.12 0.17638 94.943 94.798 94.974 -6.1757 13 9 2 0 0 0 0.42068 1 67770 67770 20.454 0 1 29194000 + 15452 19492 10518 10723 18584 18584 0.07748101625475101 GAPDEFSEY 9 Unmodified _GAPDEFSEY_ 0 0 0 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7074890136719 2 507.70618 1013.39781 NaN NaN NaN NaN NaN NaN NaN 54.131 1 54.131 53.631 54.631 0 0 0 0 0.46757 1 30037 30037 16.942 2.3606 1 + 15453 21567 10519 10724 18585 18585 -0.10835685232370906 GAPGGFRK 8 Unmodified _GAPGGFRK_ 0 0 0 REV__ENST00000491700.1_1_1:114523533-114524388:+|nuORF REV__ENST00000491700.1_1_1:114523533-114524388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2225341796875 2 395.221937 788.429321 -0.35415 -0.00013997 1.6656 0.00065827 1.3114 0.0005183 395.2224759638437 31.915 0.52425 31.945 31.67 32.195 0.030104 42 23 2 0 0 0 0.80624 1 16717 16717 2.8892 0 1 4381800 + 15454 19066 10520 10725 18586 18586 0.026643971028988744 GAPGGFRK 8 Unmodified _GAPGGFRK_ 0 0 0 REV__ENST00000491700.1_1_1:114523533-114524388:+|nuORF REV__ENST00000491700.1_1_1:114523533-114524388:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8703918457031 2 395.221937 788.429321 -0.35415 -0.00013997 1.6656 0.00065827 1.3114 0.0005183 395.2224759638437 31.915 0.52425 31.945 31.67 32.195 0.030104 42 23 2 0 0 0 8.7369 1 16620 16620 2.8892 0 1 4381800 + 15455 19066 10520 10725 18587 18587 0.026643971028988744 GAPGIISSPY 10 Unmodified _GAPGIISSPY_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5154418945312 1 961.498923 960.491647 0.080357 7.7263E-05 0.53147 0.00051101 0.61183 0.00058827 961.498696865606 65.444 0.56248 64.96 64.727 65.289 -0.48428 75 25 4 0 0 0 0.13184 1 35847 35847 42.095 7.6928 1 57473000 15456 3421 10521 10726 18588 18588 0.009820786605587273 GAPGPLGPF 9 Unmodified _GAPGPLGPF_ 0 0 0 REV__nc|ENSG00000124749|Q96P44-3|COL21A1 REV__nc|ENSG00000124749|Q96P44-3|COL21A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.7191162109375 2 406.718696 811.422839 1.6851 0.00068535 0.060521 2.4615E-05 1.7456 0.00070997 406.7185892004059 41.73 0.35386 37.122 36.923 37.277 -4.6079 44 22 3 0 0 0 0.3554 1 25177 25177 14.582 0 1 13896000 + 15457 19467 10522 10727 18589 18589 0.009584591515249485 GAPHHTIY 8 Unmodified _GAPHHTIY_ 0 0 0 FGF23|p.Q67H|1|0.13|ENSG00000118972|chr12:4379382-4379382|C/A|missense_variant FGF23|p.Q67H|1|0.13|ENSG00000118972|chr12:4379382-4379382|C/A|missense_variant FGF23|p.Q67H|1|0.13|ENSG00000118972|chr12:4379382-4379382|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7620849609375 2 448.224677 894.434801 -0.038968 -1.7466E-05 1.0286 0.00046104 0.98962 0.00044357 448.22524297895245 29.322 0.30987 29.322 29.122 29.432 0 20 14 2 0 0 0 8.7369 1 15148 15148 0.79363 0 1 476310 15458 15894 10523 10728 18590 18590 -0.016639241052871512 GAPLGMLQLQK 11 Unmodified _GAPLGMLQLQK_ 0 0 0 REV__ENST00000369170.4_1_10:120101412-120101460:-|nuORF REV__ENST00000369170.4_1_10:120101412-120101460:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.066162109375 3 385.889998 1154.64816 0.28196 0.0001088 -3.7926 -0.0014635 -3.5107 -0.0013547 386.22261555689204 53.12 0.15552 53.12 53.039 53.195 0 9 6 2 0 0 0 0.30452 1 29439 29439 0.08335 0 1 953610 + 15459 26030 10524 10729 18591 18591 0.07702620559393836 GAPLSGKDAL 10 Unmodified _GAPLSGKDAL_ 0 0 0 REV__ENSG00000197070|ENST00000371421|ARRDC1 REV__ENSG00000197070|ENST00000371421|ARRDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7582397460938 2 464.758549 927.502546 NaN NaN NaN NaN NaN NaN NaN 54.814 1 54.814 54.314 55.314 0 0 0 0 0.16406 1 30439 30439 46.021 2.2486 1 + 15460 23891 10525 10730 18592 18592 0.03589481034839537 GAPLYMESRAD 11 Unmodified _GAPLYMESRAD_ 0 0 0 nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B;ENST00000592226.5_1_17:42458037-42462568:-|nuORF nc|ENSG00000005961|P08514-3|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2810668945312 2 605.282063 1208.54957 -0.53057 -0.00032114 -0.25557 -0.00015469 -0.78614 -0.00047583 605.2821044526825 23.179 0.27197 23.179 23.036 23.307 0 23 13 2 0 0 0 0.70701 1 11779 11779 3.5965 0.60125 1 698270 15461 321 10526 10731 18593 18593 -0.04636027476317395 GAPPKIPG 8 Unmodified _GAPPKIPG_ 0 0 0 ENSG00000173486|ENST00000309366|FKBP2;ENST00000541388.1_1_11:64010007-64011498:+|nuORF ENSG00000173486|ENST00000309366|FKBP2 ENSG00000173486|ENST00000309366|FKBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.7213439941406 2 368.721239 735.427924 -0.044654 -1.6465E-05 0.05335 1.9671E-05 0.0086961 3.2065E-06 368.72122604540505 76.643 0.35278 76.163 76.012 76.365 -0.47945 49 22 3 0 0 0 0.80044 1 41909 41909 6.3541 0 1 4974600 15462 8331 10527 10732 18594 18594 0.04962763014145821 GAPPKIPG 8 Unmodified _GAPPKIPG_ 0 0 0 ENSG00000173486|ENST00000309366|FKBP2;ENST00000541388.1_1_11:64010007-64011498:+|nuORF ENSG00000173486|ENST00000309366|FKBP2 ENSG00000173486|ENST00000309366|FKBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 368.721239 735.427924 0.06986 2.5759E-05 1.7002 0.00062689 1.77 0.00065265 368.7212245288082 76.186 0.26451 76.186 76.105 76.37 0 0.011251 0.0011288 NaN 6.3541 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 994290 15463 8331 10527 10732 0.04962763014145821 GAPRGPCK 8 Unmodified _GAPRGPCK_ 0 0 0 ENST00000486173.1_1_1:214638231-214725660:-|nuORF;ENST00000491277.1_1_1:214706738-214724618:-|nuORF ENST00000486173.1_1_1:214638231-214725660:-|nuORF ENST00000486173.1_1_1:214638231-214725660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2085571289062 2 393.207973 784.401392 -0.1099 -4.3212E-05 -0.15033 -5.9111E-05 -0.26023 -0.00010232 393.20803930057406 35.062 0.87032 35.09 34.713 35.583 0.027401 88 40 4 0 0 0 8.7369 1 18713 18713 0.79363 0 1 13005000 15464 14179 10528 10733 18595 18595 0.0005675085114944523 GAPSFLAFS 9 Unmodified _GAPSFLAFS_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7296447753906 2 448.729261 895.443968 NaN NaN NaN NaN NaN NaN NaN 62.8 1 62.314 61.814 62.814 -0.48617 0 0 0 0.7243 1 34236 34236 8.5933 2.2392 1 15465 5787 10529 10734 18596 18596 -0.007935755396147215 GAPSFLAFSEI 11 Unmodified _GAPSFLAFSEI_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.1987609863281 3 380.197485 1137.57063 1.3539 0.00051473 1.2124 0.00046093 2.5662 0.00097567 380.1980260058074 50.289 0.24495 50.24 50.107 50.352 -0.048824 25 11 3 0 0 0 0.6889 1 27199 27199 2.4348 0 1 2614700 15466 5787 10530 10735 18597 18597 0.007343058948890757 GAPTLPGPL 9 Unmodified _GAPTLPGPL_ 0 0 0 ENST00000341744.7_2_20:56227391-56284786:-|nuORF;ENST00000265626.8_3_20:56227391-56286474:-|nuORF ENST00000341744.7_2_20:56227391-56284786:-|nuORF ENST00000341744.7_2_20:56227391-56284786:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 823.490478515625 1 822.47198 821.464704 -0.014796 -1.2169E-05 1.6757 0.0013782 1.6609 0.001366 822.4728116708831 70.892 0.19473 70.415 70.331 70.526 -0.47735 12 8 2 0 0 0 0.58466 1 38774 38774 2.3027 0 1 480200 15467 11972 10531 10736 18598 18598 0.04683014840054511 GAPVGPTAP 9 Unmodified _GAPVGPTAP_ 0 0 0 REV__ENSG00000197576|ENST00000360046|HOXA4 REV__ENSG00000197576|ENST00000360046|HOXA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.7079467773438 2 383.708328 765.402104 NaN NaN NaN NaN NaN NaN NaN 79.608 1 79.119 78.619 79.619 -0.48932 0 0 0 0.70111 1 43605 43605 9.3474 4.1168 1 + 15468 23939 10532 10737 18599 18599 0.010018687718456931 GAPVMRWL 8 Unmodified _GAPVMRWL_ 0 0 0 REV__ENSG00000177732|ENST00000342665|SOX12 REV__ENSG00000177732|ENST00000342665|SOX12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2312316894531 2 465.254923 928.495293 1.3082 0.00060863 -3.5331 -0.0016438 -2.2249 -0.0010352 465.2538202999587 54.627 0.13564 54.627 54.505 54.641 0 7 5 2 0 0 0 8.7369 1 30337 30337 10.183 1.5901 1 943260 + 15469 23003 10533 10738 18600 18600 0.028184699534449464 GAPVRNVE 8 Unmodified _GAPVRNVE_ 0 0 0 REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.7652282714844 2 421.229959 840.445365 -0.80826 -0.00034046 0.64181 0.00027035 -0.16645 -7.0115E-05 421.2303827166029 28.308 0.15882 28.308 28.209 28.368 0 10 7 2 0 0 0 8.7369 1 14586 14586 10.183 3.4602 1 1569000 + 15470 18636 10534 10739 18601 18601 0.018760585491463644 GAPVYVDLAY 10 Unmodified _GAPVYVDLAY_ 0 0 0 ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A ENSG00000166963|ENST00000300231|MAP1A ENSG00000166963|ENST00000300231|MAP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2755126953125 2 534.274032 1066.53351 0.4833 0.00025822 1.4672 0.00078391 1.9506 0.0010421 534.2750213612744 52.179 0.3597 51.746 51.531 51.891 -0.43367 30 17 2 0 0 0 0.65502 1 28208 28208 7.9102 1.7044 1 2786800 15471 7558 10535 10740 18602 18602 0.0029063434908493946 GAPWTKKF 8 Unmodified _GAPWTKKF_ 0 0 0 ENST00000344629.11_1_3:9798246-9798938:+|nuORF ENST00000344629.11_1_3:9798246-9798938:+|nuORF ENST00000344629.11_1_3:9798246-9798938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7595825195312 2 467.760895 933.507237 0.02165 1.0127E-05 -1.4533 -0.00067982 -1.4317 -0.00066969 467.76000092355974 70.08 0.44118 69.601 69.472 69.914 -0.47903 38 23 2 0 0 0 0.77907 1 38446 38446 10.183 10.183 1 3504200 15472 12017 10536 10741 18603 18603 0.037824099682893575 GAQAAIVVY 9 Unmodified _GAQAAIVVY_ 0 0 0 ENST00000549034.1_1_12:56383771-56384735:+|nuORF;ENST00000469122.5_1_3:19992498-20019915:+|nuORF;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;ENST00000473608.1_1_3:20017064-20025312:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C ENST00000549034.1_1_12:56383771-56384735:+|nuORF ENST00000549034.1_1_12:56383771-56384735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.493408203125 1 891.493444 890.486168 0.028331 2.5257E-05 -0.27535 -0.00024547 -0.24702 -0.00022021 891.4934961780255 51.719 0.26105 51.719 51.603 51.864 0 19 11 2 0 0 0 0.038285 3 28542 28542;28656;28671 50.855 26.181 1 3103600 15473 2603 10537 10742 18604;18605;18606 18604 0.03654399868742075 GAQGGVSIQL 10 Unmodified _GAQGGVSIQL_ 0 0 0 REV__ENST00000541050.5_1_12:109124417-109124600:-|nuORF REV__ENST00000541050.5_1_12:109124417-109124600:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2554321289062 2 465.256174 928.497795 0.85784 0.00039911 -1.4362 -0.0006682 -0.57835 -0.00026908 465.2555094219579 36.259 0.25727 36.259 36.131 36.388 0 28 12 3 0 0 0 0.095098 1 19186 19186 47.749 1.7277 1 13214000 + 15474 28590 10538 10743 18607 18607 0.03068596892092046 GAQGILLVY 9 Unmodified _GAQGILLVY_ 0 0 0 ENSG00000197562|ENST00000248139|RAB40C;nc|ENSG00000197562|Q96S21-2|RAB40C ENSG00000197562|ENST00000248139|RAB40C ENSG00000197562|ENST00000248139|RAB40C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.5426635742188 1 933.540394 932.533118 -0.44086 -0.00041156 0.94184 0.00087925 0.50098 0.00046769 933.5411533764676 77.158 0.28699 76.676 76.497 76.784 -0.4826 19 12 2 0 0 0 0.23158 1 42184 42184 20.454 7.9221 1 954910 15475 9969 10539 10744 18608 18608 0.06415259419895847 GAQGILLVY 9 Unmodified _GAQGILLVY_ 0 0 0 ENSG00000197562|ENST00000248139|RAB40C;nc|ENSG00000197562|Q96S21-2|RAB40C ENSG00000197562|ENST00000248139|RAB40C ENSG00000197562|ENST00000248139|RAB40C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2742309570312 2 467.273835 932.533118 -0.42993 -0.00020089 1.4822 0.00069261 1.0523 0.00049172 467.27444802149205 77.104 0.32993 76.621 76.454 76.784 -0.4826 23 14 2 0 0 0 0.052168 1 42194 42194 44.407 19.733 1 1134000 15476 9969 10539 10744 18609 18609 0.06415259419895847 GAQGPPGAP 9 Unmodified _GAQGPPGAP_ 0 0 0 ENSG00000168542|ENST00000304636|COL3A1 ENSG00000168542|ENST00000304636|COL3A1 ENSG00000168542|ENST00000304636|COL3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1921691894531 2 376.190303 750.366053 -0.64127 -0.00024124 0.39444 0.00014839 -0.24683 -9.2853E-05 376.19045062647194 27.176 0.2183 27.176 27.055 27.273 0 16 10 2 0 0 0 0.027803 1 13977 13977 56.541 6.8724 1 1970000 15477 7778 10540 10745 18610 18610 -0.01911588404993836 GAQGVLLVY 9 Unmodified _GAQGVLLVY_ 0 0 0 nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28 nc|ENSG00000157869|P51157-3|RAB28 nc|ENSG00000157869|P51157-3|RAB28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 919.5267944335938 1 919.524744 918.517468 0.081509 7.495E-05 0.9737 0.00089534 1.0552 0.00097029 919.5256730501137 65.538 0.34731 65.538 65.37 65.718 0 34 13 3 0 0 0 0.023164 1 36499 36499 60.39 0 1 5037400 15478 6546 10541 10746 18611 18611 0.054949729028635375 GAQGVLLVY 9 Unmodified _GAQGVLLVY_ 0 0 0 nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28 nc|ENSG00000157869|P51157-3|RAB28 nc|ENSG00000157869|P51157-3|RAB28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2666015625 2 460.26601 918.517468 0.50782 0.00023373 0.64986 0.00029911 1.1577 0.00053284 460.26628116118826 65.521 0.47791 65.521 65.347 65.824 0 48 20 4 0 0 0 0.013472 2 36610 36510;36610 70.716 0 1 6137000 15479 6546 10541 10746 18612;18613 18613 0.054949729028635375 GAQGVLLVY 9 Unmodified _GAQGVLLVY_ 0 0 0 nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28 nc|ENSG00000157869|P51157-3|RAB28 nc|ENSG00000157869|P51157-3|RAB28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2658386230469 2 460.26601 918.517468 -0.06441 -2.9646E-05 0.51599 0.00023749 0.45158 0.00020785 460.2662028251358 66.051 0.35033 65.568 65.361 65.711 -0.48323 35 16 3 0 0 0 0.023164 1 35988 35988 60.39 0 1 13863000 15480 6546 10541 10746 18614 18614 0.054949729028635375 GAQGVLLVY 9 Unmodified _GAQGVLLVY_ 0 0 0 nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28 nc|ENSG00000157869|P51157-3|RAB28 nc|ENSG00000157869|P51157-3|RAB28 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 919.524744 918.517468 -0.16929 -0.00015567 0.20343 0.00018706 0.034139 3.1392E-05 919.5249318704291 66.022 0.34822 65.539 65.338 65.686 -0.48323 0.00030922 -0.00044828 NaN 60.39 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 14909000 15481 6546 10541 10746 0.054949729028635375 GAQGVLLVY 9 Unmodified _GAQGVLLVY_ 0 0 0 nc|ENSG00000157869|P51157-3|RAB28;nc|ENSG00000157869|P51157-2|RAB28;ENSG00000157869|ENST00000330852|RAB28 nc|ENSG00000157869|P51157-3|RAB28 nc|ENSG00000157869|P51157-3|RAB28 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 460.26601 918.517468 0.93226 0.00042909 -0.81679 -0.00037594 0.11547 5.3148E-05 460.26551304200865 65.573 0.14703 65.573 65.498 65.645 7.6294E-06 -0.023763 -0.0012464 NaN 70.716 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1630300 15482 6546 10541 10746 0.054949729028635375 GAQIALFNY 9 Unmodified _GAQIALFNY_ 0 0 0 REV__ENSG00000161904|ENST00000293760|LEMD2 REV__ENSG00000161904|ENST00000293760|LEMD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7908020019531 2 498.761092 995.507631 0.39011 0.00019457 4.0409 0.0020154 4.431 0.00221 498.7632044624697 61.327 0.13552 61.327 61.275 61.411 0 9 5 2 0 0 0 0.18118 1 34223 34223 18.135 2.3668 1 716320 + 15483 21609 10542 10747 18615 18615 0.009697848974724366 GAQNSDSL 8 Unmodified _GAQNSDSL_ 0 0 0 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 MSMS AL20221201_MKP_PDAC_01 4 396.5157775878906 2 396.180132 790.345711 NaN NaN NaN NaN NaN NaN NaN 23.177 1 20.399 19.899 20.899 -2.7784 0 0 0 0.97444 1 12526 12526 5.2307 2.3415 1 + 15484 23443 10543 10748 18616 18616 -0.0578480385546527 GAQSSSPELQL 11 Unmodified _GAQSSSPELQL_ 0 0 0 REV__ENST00000379612.4_3_11:12284745-12284937:+|nuORF REV__ENST00000379612.4_3_11:12284745-12284937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7806396484375 2 558.78021 1115.54587 0.81905 0.00045767 0.1801 0.00010063 0.99914 0.0005583 558.7802178535061 49.709 0.25138 49.709 49.56 49.812 0 17 11 2 0 0 0 0.16515 1 27368 27368 34.932 4.2955 1 5019400 + 15485 26293 10544 10749 18617 18617 -0.007283739784952559 GAQTIIASMPI 11 Unmodified _GAQTIIASMPI_ 0 0 0 REV__nc|ENSG00000172534|P51610-2|HCFC1 REV__nc|ENSG00000172534|P51610-2|HCFC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2498168945312 2 551.302267 1100.58998 0.53355 0.00029414 0.28197 0.00015545 0.81551 0.00044959 551.3026893220315 68.33 0.12585 68.33 68.224 68.35 0 8 5 2 0 0 0 0.30049 1 38042 38042 6.2058 0 1 180120 + 15486 22658 10545 10750 18618 18618 0.04370938914121325 GAQVYLSCEVI 11 Unmodified _GAQVYLSCEVI_ 0 0 0 ENST00000512512.3_1_4:57897485-57931766:-|nuORF;nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7 ENST00000512512.3_1_4:57897485-57931766:-|nuORF ENST00000512512.3_1_4:57897485-57931766:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.2942504882812 2 591.297181 1180.57981 0.097333 5.7553E-05 -3.444 -0.0020365 -3.3467 -0.0019789 591.2947260185699 76.282 0.24495 76.33 76.247 76.492 0.047943 16 9 2 0 0 0 0.56638 1 42101 42101 13.042 0.80181 1 4586600 15487 6994 10546 10751 18619 18619 -0.0032566881113780255 GAQYPWVQIF 10 Unmodified _GAQYPWVQIF_ 0 0 0 ENST00000555020.5_1_9:34647742-34648507:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT ENST00000555020.5_1_9:34647742-34648507:+|nuORF ENST00000555020.5_1_9:34647742-34648507:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8089599609375 2 604.808574 1207.60259 2.1618 0.0013075 -1.1441 -0.00069196 1.0177 0.0006155 604.8078534933451 95.737 0.68346 95.742 95.265 95.949 0.004158 77 25 5 0 0 0 0.14688 1 53206 53206 39.957 13.074 1 32334000 15488 10467 10547 10752 18620 18620 0.007097183686482822 GAQYPWVQIF 10 Unmodified _GAQYPWVQIF_ 0 0 0 ENST00000555020.5_1_9:34647742-34648507:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT ENST00000555020.5_1_9:34647742-34648507:+|nuORF ENST00000555020.5_1_9:34647742-34648507:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8091430664062 2 604.808574 1207.60259 NaN NaN NaN NaN NaN NaN NaN 75.257 1 75.303 74.803 75.803 0.045959 0 0 0 0.33727 1 41500 41500 34.102 3.4659 1 15489 10467 10547 10752 18621 18621 0.007097183686482822 GAQYPWVQIF 10 Unmodified _GAQYPWVQIF_ 0 0 0 ENST00000555020.5_1_9:34647742-34648507:+|nuORF;ENST00000557706.5_1_9:34647742-34649031:+|nuORF;ENST00000555086.5_1_9:34647111-34648905:+|nuORF;nc|ENSG00000213930|P07902-2|GALT;ENST00000554638.5_1_9:34647742-34650443:+|nuORF;ENSG00000213930|ENST00000378842|GALT ENST00000555020.5_1_9:34647742-34648507:+|nuORF ENST00000555020.5_1_9:34647742-34648507:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8090209960938 2 604.808574 1207.60259 0.60257 0.00036444 -1.0045 -0.00060752 -0.40191 -0.00024308 604.8086108459324 92.228 0.99584 86.052 85.351 86.346 -6.1757 94 58 2 0 0 0 0.1899 2 60960 60836;60960 26.884 2.8631 1 54896000 15490 10467 10547 10752 18622;18623 18623 0.007097183686482822 GARAPHVY 8 Unmodified _GARAPHVY_ 0 0 0 ENST00000373685.1_1_6:36853645-36860589:+|nuORF ENST00000373685.1_1_6:36853645-36860589:+|nuORF ENST00000373685.1_1_6:36853645-36860589:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7322998046875 2 435.732669 869.450785 NaN NaN NaN NaN NaN NaN NaN 22.912 1 22.912 22.412 23.412 0 0 0 0 0.97444 1 11666 11666 2.8892 0 1 15491 12421 10548 10753 18624 18624 0.010837821316044938 GAREDQLY 8 Unmodified _GAREDQLY_ 0 0 0 REV__nc|ENSG00000160285|P48449-3|LSS REV__nc|ENSG00000160285|P48449-3|LSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2291259765625 2 476.230156 950.445759 -0.14942 -7.1158E-05 -0.63774 -0.00030371 -0.78716 -0.00037487 476.2299100925806 23.557 0.46477 23.557 23.347 23.811 0 33 23 2 0 0 0 0.80624 1 11965 11965 2.8892 0.58649 1 895080 + 15492 21530 10549 10754 18625 18625 -0.03144566521677916 GARGPAGW 8 Unmodified _GARGPAGW_ 0 0 0 ENST00000395011.5_1_10:72060408-72060609:-|nuORF;ENSG00000187773|ENST00000343998|DIPK1C ENST00000395011.5_1_10:72060408-72060609:-|nuORF ENST00000395011.5_1_10:72060408-72060609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 772.6756591796875 1 771.389648 770.382371 2.4753 0.0019094 1.1135 0.00085897 3.5888 0.0027684 771.3903439949931 96.396 0.19357 96.389 96.282 96.475 -0.007019 9 6 2 0 0 0 0.80992 1 53496 53496 0.69038 0 1 1748900 15493 12758 10550 10755 18626 18626 -0.012004624482415238 GARGPGGVFK 10 Unmodified _GARGPGGVFK_ 0 0 0 REV__ENSG00000203740|ENST00000439373|NTMT2 REV__ENSG00000203740|ENST00000439373|NTMT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2673645019531 2 473.266876 944.519199 1.1625 0.00055016 -1.212 -0.00057361 -0.049552 -2.3452E-05 473.2664774829952 21.237 0.29112 18.544 18.371 18.662 -2.693 35 18 3 0 0 0 0.35903 1 11289 11289 24.021 0.87215 1 10420000 + 15494 24120 10551 10756 18627 18627 0.04472026711471244 GARIYHTI 8 Unmodified _GARIYHTI_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7615966796875 2 465.761426 929.5083 0.49293 0.00022959 -0.91882 -0.00042795 -0.42589 -0.00019836 465.7608480225084 28.561 0.16233 28.499 28.392 28.554 -0.062159 14 5 3 0 0 0 0.13832 1 14738 14738 89.427 45.02 1 5189100 15495 389 10552 10757 18628 18628 0.040726243371977944 GARIYHTI 8 Unmodified _GARIYHTI_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7619018554688 2 465.761426 929.5083 0.17298 8.057E-05 1.0568 0.00049223 1.2298 0.0005728 465.7620316246147 28.391 0.13931 28.421 28.354 28.494 0.029566 9 5 2 0 0 0 0.17035 1 14794 14794 81.864 43.89 1 2326700 15496 389 10552 10757 18629 18629 0.040726243371977944 GARKHIGL 8 Unmodified _GARKHIGL_ 0 0 0 REV__ENSG00000105926|ENST00000222644|PALS2 REV__ENSG00000105926|ENST00000222644|PALS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2649841308594 2 426.264136 850.51372 1.1227 0.00047855 0.26549 0.00011317 1.3882 0.00059172 426.2643602636982 91.043 0.48596 84.868 84.625 85.111 -6.1757 46 28 2 0 0 0 0.72953 1 60250 60250 14.582 0 1 9432800 + 15497 18472 10553 10758 18630 18630 0.08248347919652588 GARLPGAAL 9 Unmodified _GARLPGAAL_ 0 0 0 ENST00000561688.1_1_16:2294286-2301561:-|nuORF;ENST00000563029.5_1_16:2293317-2301515:-|nuORF;nc|ENSG00000167969|P42126-2|ECI1;ENSG00000167969|ENST00000301729|ECI1 ENST00000561688.1_1_16:2294286-2301561:-|nuORF ENST00000561688.1_1_16:2294286-2301561:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2504577636719 2 413.250695 824.486836 -0.018178 -7.5121E-06 -0.040778 -1.6852E-05 -0.058957 -2.4364E-05 413.2505119469911 39.284 0.26097 38.997 38.882 39.143 -0.28687 19 12 2 0 0 0 0.095405 1 20722 20722 34.102 1.9855 1 2879600 15498 7689 10554 10759 18631 18631 0.06757239308467433 GARLRAPA 8 Unmodified _GARLRAPA_ 0 0 0 REV__ENST00000533263.1_2_11:57282631-57283146:-|nuORF REV__ENST00000533263.1_2_11:57282631-57283146:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2487487792969 2 406.248486 810.48242 0.88395 0.0003591 -0.35515 -0.00014428 0.5288 0.00021483 406.24825193645137 79.477 0.553 78.988 78.682 79.235 -0.48932 52 23 3 0 0 0 0.80975 1 43541 43541 0.79363 0 1 2416000 + 15499 28478 10555 10760 18632 18632 0.06959774885547176 GARLRAPA 8 Unmodified _GARLRAPA_ 0 0 0 REV__ENST00000533263.1_2_11:57282631-57283146:-|nuORF REV__ENST00000533263.1_2_11:57282631-57283146:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2490234375 2 406.248486 810.48242 -0.05125 -2.082E-05 -0.82474 -0.00033505 -0.87599 -0.00035587 406.24801455022464 76.095 1.2617 76.142 75.82 77.082 0.047943 146 53 5 0 0 0 0.80975 1 42284 42284 0.79363 0 1 655710000 + 15500 28478 10555 10760 18633 18633 0.06959774885547176 GARRKWQRF 9 Unmodified _GARRKWQRF_ 0 0 0 REV__ENST00000581120.1_1_17:61678332-61678416:+|nuORF REV__ENST00000581120.1_1_17:61678332-61678416:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7419128417969 3 402.231857 1203.67374 -0.40564 -0.00016316 -1.2071 -0.00048554 -1.6128 -0.0006487 402.23114979781315 31.991 0.21849 32.021 31.866 32.084 0.030106 16 9 2 0 0 0 0.2188 1 16762 16762 1.0715 0.057888 1 2306000 + 15501 29061 10556 10761 18634 18634 0.08005275916684695 GARRMIRH 8 Unmodified _GARRMIRH_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7859191894531 2 498.785244 995.555936 0.31351 0.00015637 1.1324 0.00056482 1.4459 0.00072119 498.78560855056213 80.285 0.3826 80.285 80.089 80.472 0 45 19 3 0 0 0 0.80992 1 44510 44510 0.69038 0 1 1357700 15502 8655 10557 10762 18635 18635 0.057980000563929934 GARRMIRH 8 Unmodified _GARRMIRH_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7863159179688 2 498.785244 995.555936 0.73525 0.00036673 1.0016 0.00049956 1.7368 0.0008663 498.7855467039586 80.653 0.42757 80.161 79.929 80.356 -0.49247 46 17 4 0 0 0 0.80722 1 44109 44109 2.3027 0 1 1797700 15503 8655 10557 10762 18636 18636 0.057980000563929934 GARRMIRH 8 Unmodified _GARRMIRH_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7861938476562 2 498.785244 995.555936 0.17158 8.5584E-05 0.89761 0.00044771 1.0692 0.0005333 498.78554475863245 79.992 0.42606 80.05 79.772 80.198 0.057587 50 17 4 0 0 0 0.80311 2 44114 44114;44213 4.756 4.756 1 24385000 15504 8655 10557 10762 18637;18638 18637 0.057980000563929934 GASKYRWFHNA 11 Unmodified _GASKYRWFHNA_ 0 0 0 ENSG00000128791|ENST00000262120|TWSG1 ENSG00000128791|ENST00000262120|TWSG1 ENSG00000128791|ENST00000262120|TWSG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.8309326171875 2 668.830903 1335.64725 NaN NaN NaN NaN NaN NaN NaN 84.262 1 83.762 83.262 84.262 -0.49961 0 0 0 0.9435 1 46113 46113 0 0 1 15505 4090 10558 10763 18639 18639 -0.0071445776527525595 GASLTLSPY 9 Unmodified _GASLTLSPY_ 0 0 0 ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.740234375 2 454.739825 907.465098 0.84148 0.00038265 0.2568 0.00011678 1.0983 0.00049943 454.7398215538182 49.796 0.3377 49.796 49.629 49.966 0 41 15 4 0 0 0 0.18465 1 27485 27485 24.674 1.5255 1 18928000 15506 14343 10559 10764 18640 18640 0.007663897692282262 GASPGPFPTC 10 Unmodified _GASPGPFPTC_ 0 0 0 REV__ENST00000530353.1_1_8:145980334-145980610:-|nuORF REV__ENST00000530353.1_1_8:145980334-145980610:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2092590332031 2 467.210378 932.406203 0.31262 0.00014606 -4.1607 -0.0019439 -3.8481 -0.0017979 467.2080978571302 65.029 0.32385 64.545 64.36 64.684 -0.48428 17 14 2 0 0 0 0.67033 1 35482 35482 6.2058 2.6093 1 808200 + 15507 28438 10560 10765 18641 18641 -0.06270409796752574 GASRPRVAV 9 Unmodified _GASRPRVAV_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7738037109375 2 456.772326 911.530098 1.2068 0.00055124 0.82716 0.00037782 2.034 0.00092906 456.77276533659614 20.372 0.32254 17.679 17.559 17.882 -2.693 28 17 2 0 0 0 0.5029 1 10836 10836 7.2892 0 1 1976500 + 15508 199 10561 10766 18642 18642 0.07079429085740685 GASTITEP 8 Unmodified _GASTITEP_ 0 0 0 REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__nc|ENSG00000188158|Q6T4R5-4|NHS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1961975097656 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 21.475 1 21.488 20.988 21.988 0.013796 0 0 0 0.97444 1 10999 10999 2.3027 0 1 + 15509 23693 10562 10767 18643 18643 -0.020264451902903602 GATDIALASSI 11 Unmodified _GATDIALASSI_ 0 0 0 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2755737304688 2 509.774396 1017.53424 0.24426 0.00012452 2.512 0.0012806 2.7563 0.0014051 510.27631698290503 67.403 0.59923 66.921 66.656 67.255 -0.48218 90 26 5 0 0 0 0.25654 1 36742 36742 29.082 6.3453 1 13481000 15510 9013 10563 10768 18644 18644 0.026174289981327092 GATLVVYKD 9 Unmodified _GATLVVYKD_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 967.5372314453125 1 965.530224 964.522947 -0.14507 -0.00014007 -0.38916 -0.00037575 -0.53423 -0.00051581 965.5294745806449 51.627 0.24348 51.194 51.061 51.305 -0.43367 28 12 3 0 0 0 0.30562 1 27863 27863 16.942 6.1184 1 9638200 15511 628 10564 10769 18645 18645 0.03926651694666816 GATSLSFYS 9 Unmodified _GATSLSFYS_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4376831054688 1 932.435989 931.428712 0.80289 0.00074864 1.7731 0.0016533 2.576 0.002402 932.4361223142103 49.579 0.18763 49.579 49.441 49.629 0 13 7 2 0 0 0 0.39863 1 27255 27255 12.532 0 1 1179500 + 15512 23799 10565 10770 18646 18646 -0.03974487127482007 GAVDVVIQL 9 Unmodified _GAVDVVIQL_ 0 0 0 REV__nc|ENSG00000061987|Q7Z3U7-2|MON2 REV__nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 913.53173828125 1 913.535309 912.528032 0.46554 0.00042529 -1.1717 -0.0010704 -0.70612 -0.00064507 913.5340608738182 73.347 0.25064 73.347 73.149 73.4 0 21 13 2 0 0 0 0.16226 1 40760 40760 26.884 0 1 1195400 + 15513 17337 10566 10771 18647 18647 0.06826955557301062 GAVDVVIQL 9 Unmodified _GAVDVVIQL_ 0 0 0 REV__nc|ENSG00000061987|Q7Z3U7-2|MON2 REV__nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 913.535309 912.528032 0.46554 0.00042529 -1.1717 -0.0010704 -0.70612 -0.00064507 913.5340608738182 73.347 0.25064 73.347 73.149 73.4 0 0 0 NaN 26.884 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1195400 + 15514 17337 10566 10771 0.06826955557301062 GAVELVPV 8 Unmodified _GAVELVPV_ 0 0 0 ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF ENST00000491154.1_1_X:153669338-153669692:+|nuORF ENST00000491154.1_1_X:153669338-153669692:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2335815429688 2 392.234179 782.453805 -0.016076 -6.3054E-06 -1.4357 -0.00056312 -1.4517 -0.00056942 392.23361843985936 19.162 0.13874 19.17 19.101 19.24 0.0078487 12 9 2 0 0 0 0.80143 1 9746 9746 5.7604 0 1 368090 15515 13986 10567 10772 18648 18648 0.053876124657563196 GAVGALLVY 9 Unmodified _GAVGALLVY_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.5010375976562 1 862.503281 861.496004 0.40917 0.00035291 0.11039 9.5208E-05 0.51956 0.00044812 862.5034456985215 73.073 0.28976 73.073 72.905 73.195 0 21 12 2 0 0 0 0.3554 1 40730 40730 14.582 5.2343 1 1175700 15516 2161 10568 10773 18649 18649 0.05971587874137185 GAVGALLVY 9 Unmodified _GAVGALLVY_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 862.50439453125 1 862.503281 861.496004 0.12234 0.00010552 0.65852 0.00056798 0.78086 0.00067349 862.5037785109425 73.482 0.4258 73.006 72.804 73.229 -0.47588 51 18 4 0 0 0 0.047696 2 40240 40133;40240 45.75 0 1 13410000 15517 2161 10568 10773 18650;18651 18651 0.05971587874137185 GAVKLSISY 9 Unmodified _GAVKLSISY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.27099609375 2 469.271293 936.528032 0.52028 0.00024415 0.099428 4.6659E-05 0.61971 0.00029081 469.27120073086905 49.361 0.28014 49.317 49.175 49.456 -0.04369 20 13 2 0 0 0 0.014417 1 26655 26655 69.105 21.356 1 2249300 15518 445 10569 10774 18652 18652 0.05722955557280329 GAVKLSISY 9 Unmodified _GAVKLSISY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2714538574219 2 469.271293 936.528032 1.0743 0.00050415 0.50575 0.00023733 1.5801 0.00074149 469.2712092643131 55.225 0.34684 49.304 49.113 49.459 -5.9211 52 21 3 0 0 0 0.023481 2 35082 35082;35221 60.074 16.302 1 33849000 15519 445 10569 10774 18653;18654 18653 0.05722955557280329 GAVKVDPL 8 Unmodified _GAVKVDPL_ 0 0 0 REV__nc|ENSG00000145375|Q8NB90-3|AFG2A REV__nc|ENSG00000145375|Q8NB90-3|AFG2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2508544921875 2 399.739628 797.464704 0.34713 0.00013876 -0.30077 -0.00012023 0.046362 1.8533E-05 399.73973287993306 65.137 0.25829 64.653 64.533 64.791 -0.48428 17 11 2 0 0 0 8.7369 1 35548 35548 0.79363 0 1 1154300 + 15520 20770 10570 10775 18655 18655 0.057870148400297694 GAVLSHRR 8 Unmodified _GAVLSHRR_ 0 0 0 REV__ENST00000503310.1_1_5:118872171-118877621:+|nuORF REV__ENST00000503310.1_1_5:118872171-118877621:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2647399902344 2 448.264668 894.514782 0.25234 0.00011312 0.13201 5.9175E-05 0.38435 0.00017229 448.2646182614353 30.847 0.23532 30.878 30.69 30.925 0.030104 13 9 2 0 0 0 0.75262 1 16117 16117 12.532 0 1 1165000 + 15521 28038 10571 10776 18656 18656 0.06330562288565034 GAVLSHRR 8 Unmodified _GAVLSHRR_ 0 0 0 REV__ENST00000503310.1_1_5:118872171-118877621:+|nuORF REV__ENST00000503310.1_1_5:118872171-118877621:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.264668 894.514782 0.25234 0.00011312 0.13201 5.9175E-05 0.38435 0.00017229 448.2646182614353 30.847 0.23532 30.878 30.69 30.925 0.030104 0.078118 0.00037401 NaN 12.532 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1165000 + 15522 28038 10571 10776 0.06330562288565034 GAVPHLVYLLL 11 Unmodified _GAVPHLVYLLL_ 0 0 0 ENST00000602966.1_1_1:160970859-160990872:-|nuORF ENST00000602966.1_1_1:160970859-160990872:-|nuORF ENST00000602966.1_1_1:160970859-160990872:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3189697265625 2 597.865892 1193.71723 0.14197 8.488E-05 2.2815 0.0013641 2.4235 0.0014489 597.866995218995 74.424 0.13525 74.47 74.387 74.522 0.045959 7 5 2 0 0 0 0.304 1 41005 41005 1.4819 0 1 526090 15523 15828 10572 10777 18657 18657 0.12812027850623053 GAVPTPILV 9 Unmodified _GAVPTPILV_ 0 0 0 REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF REV__ENST00000428449.5_1_7:121945734-121946145:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7723693847656 2 433.770929 865.527304 NaN NaN NaN NaN NaN NaN NaN 76.436 1 76.436 75.936 76.936 0 0 0 0 0.85737 1 42500 42500 0.6015 0 1 + 15524 26939 10573 10778 18658 18658 0.08916160908233906 GAVRWVGG 8 Unmodified _GAVRWVGG_ 0 0 0 REV__ENST00000398665.7_1_19:2231997-2232204:+|nuORF REV__ENST00000398665.7_1_19:2231997-2232204:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2229614257812 2 401.221937 800.429321 0.62121 0.00024924 1.7341 0.00069574 2.3553 0.00094498 401.2226770865687 52.536 0.23927 52.477 52.328 52.567 -0.058918 20 11 2 0 0 0 0.80232 1 28437 28437 5.2307 0.47466 1 2427600 + 15525 26566 10574 10779 18659 18659 0.021123971028941924 GAVSGAGLF 9 Unmodified _GAVSGAGLF_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.7091979980469 2 389.708328 777.402104 1.1777 0.00045894 0.19976 7.7849E-05 1.3774 0.00053679 389.7082341242004 57.76 0.44442 51.732 51.443 51.888 -6.0275 40 24 2 0 0 0 0.023164 1 36854 36854 60.39 6.814 1 41434000 + 15526 20785 10575 10780 18660 18660 0.004498687718637484 GAVSIILLP 9 Unmodified _GAVSIILLP_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7883605957031 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 38.263 1 38.263 37.763 38.763 0 0 0 0 0.82015 1 20425 20425 5.2307 0 1 + 15527 29683 10576 10781 18661 18661 0.11308733942325944 GAVVPPYA 8 Unmodified _GAVVPPYA_ 0 0 0 REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3 REV__nc|ENSG00000196236|Q9NQH7-2|XPNPEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2132263183594 2 387.213246 772.41194 0.47685 0.00018464 -0.43887 -0.00016993 0.037979 1.4706E-05 387.2131164543262 88.282 0.39835 87.778 87.602 88 -0.50423 30 17 2 0 0 0 0.80624 1 48371 48371 2.8892 0 1 760230 + 15528 23808 10577 10782 18662 18662 0.01663056777215388 GAYEQVIKY 9 Unmodified _GAYEQVIKY_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7584838867188 2 535.779482 1069.54441 -0.092701 -4.9667E-05 3.559 0.0019068 3.4663 0.0018572 535.7805906112987 41.779 0.13625 41.779 41.709 41.846 0 13 6 3 0 0 0 0.1325 1 22570 22570 32.305 14.171 1 3951800 15529 502 10578 10783 18663 18663 0.0124203672337444 GAYGSVCRCD 10 Unmodified _GAYGSVCRCD_ 0 0 0 ENST00000588772.1_1_18:76914524-76954520:+|nuORF ENST00000588772.1_1_18:76914524-76954520:+|nuORF ENST00000588772.1_1_18:76914524-76954520:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7086181640625 2 515.707676 1029.4008 0.59949 0.00030916 0.93753 0.00048349 1.537 0.00079265 515.7078175328522 38.65 0.20903 38.65 38.494 38.703 0 20 9 3 0 0 0 0.67033 1 20651 20651 6.2058 0.44535 1 1361100 15530 15655 10579 10784 18664 18664 -0.11272456650863205 GAYHMITF 8 Unmodified _GAYHMITF_ 0 0 0 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 REV__nc|ENSG00000041515|Q9Y6X6|MYO16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2215576171875 2 470.223288 938.432024 0.00048134 2.2634E-07 -3.7264 -0.0017522 -3.7259 -0.001752 470.22163820647575 23.359 0.34684 23.359 23.182 23.529 0 20 16 2 0 0 0 0.77907 1 11964 11964 10.183 0 1 682890 + 15531 17198 10580 10785 18665 18665 -0.03965515554466492 GAYKELVTF 9 Unmodified _GAYKELVTF_ 0 0 0 nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;PPHLN1-TIMELESS|3|fusion;PPHLN1-TIMELESS|4|fusion;PPHLN1-TIMELESS|5|fusion;ENST00000557589.1_1_12:56815505-56817595:-|nuORF;PPHLN1-TIMELESS|2|fusion;PPHLN1-TIMELESS|1|fusion;PPHLN1-TIMELESS|6|fusion nc|ENSG00000111602|Q9UNS1-2|TIMELESS;PPHLN1-TIMELESS|2|fusion nc|ENSG00000111602|Q9UNS1-2|TIMELESS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.276123046875 2 514.276575 1026.5386 0.051217 2.6339E-05 0.95695 0.00049214 1.0082 0.00051848 514.2767562373303 54.808 0.24024 54.341 54.242 54.482 -0.46664 16 11 2 0 0 0 0.2324 1 29752 29752 20.415 1.1575 1 2122600 15532 2797;16691 10581 10786 18666 18666 0.026389382117031346 GCCLWCCCVMP 11 Unmodified _GCCLWCCCVMP_ 0 0 0 REV__ENST00000355315.7_2_8:57130132-57130228:+|nuORF REV__ENST00000355315.7_2_8:57130132-57130228:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.208740234375 2 609.208772 1216.40299 NaN NaN NaN NaN NaN NaN NaN 3.5119 1 3.4996 2.9996 3.9996 -0.012334 0 0 0 0.9435 1 1785 1785 0 0 1 + 15533 25806 10582 10787 18667 18667 -0.19655526824931258 GCCLWCCCVMP 11 Unmodified _GCCLWCCCVMP_ 0 0 0 REV__ENST00000355315.7_2_8:57130132-57130228:+|nuORF REV__ENST00000355315.7_2_8:57130132-57130228:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.21044921875 2 609.208772 1216.40299 NaN NaN NaN NaN NaN NaN NaN 13.503 1 13.513 13.013 14.013 0.0096512 0 0 0 0.9435 1 6661 6661 0 0 1 + 15534 25806 10582 10787 18668 18668 -0.19655526824931258 GCCSAAHY 8 Unmodified _GCCSAAHY_ 0 0 0 nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB;ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1465148925781 2 406.146723 810.278894 NaN NaN NaN NaN NaN NaN NaN 24.519 1 24.519 24.019 25.019 0 0 0 0 0.97444 1 12534 12534 0.79363 0 1 15535 7204 10583 10788 18669 18669 -0.133834539425834 GCCSSGCCSS 10 Unmodified _GCCSSGCCSS_ 0 0 0 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.8945617675781 2 447.116448 892.218344 NaN NaN NaN NaN NaN NaN NaN 42.188 1 42.188 41.688 42.688 0 0 0 0 1.0061 1 22824 22824 0 0 1 + 15536 23602 10584 10789 18670 18670 -0.23207675379467219 GCDCDCNHC 9 Unmodified _GCDCDCNHC_ 0 0 0 ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF ENST00000451025.6_2_6:43608345-43608465:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.1192016601562 2 485.119522 968.224492 NaN NaN NaN NaN NaN NaN NaN 15.312 1 15.318 14.818 15.818 0.0057774 0 0 0 0.8622 1 7626 7626 0 0 1 15537 13515 10585 10790 18671 18671 -0.2608915714796467 GCDDSNNNDSD 11 Unmodified _GCDDSNNNDSD_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.177001953125 2 578.178189 1154.34182 0.27025 0.00015625 -0.63616 -0.00036782 -0.36591 -0.00021156 578.1777636949703 64.05 0.36418 64.05 63.85 64.214 0 64 14 6 0 0 0 0.7453 1 35672 35672 0 0 1 3010400 + 15538 19133 10586 10791 18672 18672 -0.22917306202157306 GCEECKYY 8 Unmodified _GCEECKYY_ 0 0 0 REV__nc|ENSG00000250312|Q3SXZ3-2|ZNF718 REV__nc|ENSG00000250312|Q3SXZ3-2|ZNF718 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2585754394531 2 497.685878 993.357204 NaN NaN NaN NaN NaN NaN NaN 71.231 1 70.754 70.254 71.254 -0.47735 0 0 0 0.97444 1 38983 38983 2.5775 1.7838 1 + 15539 24499 10587 10792 18673 18673 -0.13974066148011843 GCGENGCC 8 Unmodified _GCGENGCC_ 0 0 0 REV__ENSG00000169903|ENST00000305354|TM4SF4 REV__ENSG00000169903|ENST00000305354|TM4SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 742.1942138671875 1 742.195306 741.18803 -0.6842 -0.00050781 -3.1713 -0.0023537 -3.8555 -0.0028615 742.1940932106944 10.179 0.0074921 10.179 10.174 10.181 0 4 2 2 0 0 0 0.81107 1 4835 4835 0 0 1 137130 + 15540 22435 10588 10793 18674 18674 -0.19291665982359518 GCGENGCC 8 Unmodified _GCGENGCC_ 0 0 0 REV__ENSG00000169903|ENST00000305354|TM4SF4 REV__ENSG00000169903|ENST00000305354|TM4SF4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 742.195306 741.18803 -0.6842 -0.00050781 -3.1713 -0.0023537 -3.8555 -0.0028615 742.1940932106944 10.179 0.0074921 10.179 10.174 10.181 0 0.10537 -0.00028809 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 137130 + 15541 22435 10588 10793 -0.19291665982359518 GCGENGCC 8 Unmodified _GCGENGCC_ 0 0 0 REV__ENSG00000169903|ENST00000305354|TM4SF4 REV__ENSG00000169903|ENST00000305354|TM4SF4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 742.195306 741.18803 -0.76314 -0.0005664 -2.2901 -0.0016997 -3.0532 -0.0022661 742.1955782815453 10.058 0.024988 9.968 9.9517 9.9767 -0.08967 -0.10537 0.00036594 NaN 0 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 231750 + 15542 22435 10588 10793 -0.19291665982359518 GCHTLRGL 8 Unmodified _GCHTLRGL_ 0 0 0 REV__ENST00000538930.5_1_16:57075247-57096263:+|nuORF REV__ENST00000538930.5_1_16:57075247-57096263:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.726806640625 2 428.726529 855.438506 NaN NaN NaN NaN NaN NaN NaN 38.303 1 33.935 33.435 34.435 -4.3689 0 0 0 0.95607 1 22577 22577 9.3474 0.75416 1 + 15543 28564 10589 10794 18675 18675 0.005004223969194754 GCLHKDIYAL 10 Unmodified _GCLHKDIYAL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2002258300781 3 378.198831 1131.57467 1.7413 0.00065857 -0.69148 -0.00026152 1.0498 0.00039705 378.1986462905999 41.013 0.28763 36.405 36.18 36.467 -4.6079 22 17 2 0 0 0 0.54684 1 24576 24576 12.175 0 1 10463000 15544 10835 10590 10795 18676 18676 0.014140721169042081 GCLSSQHQ 8 Unmodified _GCLSSQHQ_ 0 0 0 REV__ENST00000429770.5_2_3:50402382-50403264:-|nuORF REV__ENST00000429770.5_2_3:50402382-50403264:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.1905212402344 2 430.189977 858.365401 NaN NaN NaN NaN NaN NaN NaN 25.593 1 22.71 22.21 23.21 -2.8831 0 0 0 0.97444 1 14023 14023 2.5775 0 1 + 15545 26956 10591 10796 18677 18677 -0.06944751116361658 GCMSTSAT 8 Unmodified _GCMSTSAT_ 0 0 0 REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1459350585938 2 379.146389 756.278225 NaN NaN NaN NaN NaN NaN NaN 56.291 1 56.291 55.791 56.791 0 0 0 0 0.97444 1 31304 31304 2.5775 0 1 + 15546 25815 10592 10797 18678 18678 -0.10966293382284675 GCPLCLLA 8 Unmodified _GCPLCLLA_ 0 0 0 ENST00000240123.11_2_8:22432596-22432776:+|nuORF ENST00000240123.11_2_8:22432596-22432776:+|nuORF ENST00000240123.11_2_8:22432596-22432776:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.2030029296875 2 395.20351 788.392467 NaN NaN NaN NaN NaN NaN NaN 12.287 1 9.8054 9.3054 10.305 -2.482 0 0 0 0.97444 1 6207 6207 2.8892 2.0956 1 15547 11103 10593 10798 18679 18679 -0.010193588295464906 GCQRNPTRTC 10 Unmodified _GCQRNPTRTC_ 0 0 0 ENST00000300434.3_1_9:130707799-130712818:-|nuORF ENST00000300434.3_1_9:130707799-130712818:-|nuORF ENST00000300434.3_1_9:130707799-130712818:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1743774414062 3 379.174692 1134.50225 NaN NaN NaN NaN NaN NaN NaN 68.618 1 68.618 68.118 69.118 0 0 0 0 0.99248 1 38245 38245 0.62683 0 1 15548 11551 10594 10799 18680 18680 -0.05962585228280659 GCRACQPNM 9 Unmodified _GCRACQPNM_ 0 0 0 REV__nc|ENSG00000078114|O76041-2|NEBL REV__nc|ENSG00000078114|O76041-2|NEBL MSMS AL20221201_MKP_PDAC_01 4 490.1976623535156 2 490.198964 978.383376 NaN NaN NaN NaN NaN NaN NaN 17.813 1 15.226 14.726 15.726 -2.5866 0 0 0 0.46757 1 9345 9345 16.942 3.4344 1 + 15549 29509 10595 10800 18681 18681 -0.10668075457510895 GCRAHPAL 8 Unmodified _GCRAHPAL_ 0 0 0 REV__ENST00000337318.7_2_10:126309523-126309826:-|nuORF REV__ENST00000337318.7_2_10:126309523-126309826:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.7133483886719 2 412.713422 823.412291 NaN NaN NaN NaN NaN NaN NaN 74.767 1 68.591 68.091 69.091 -6.1757 0 0 0 0.97444 1 48881 48881 2.8892 0.31174 1 + 15550 25660 10596 10801 18682 18682 -0.006478467745637317 GCSHILKLGEW 11 Unmodified _GCSHILKLGEW_ 0 0 0 REV__ENST00000449305.5_1_1:93805081-93811232:-|nuORF REV__ENST00000449305.5_1_1:93805081-93811232:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 621.7843017578125 2 621.818615 1241.62268 0.48676 0.00030268 -0.973 -0.00060503 -0.48624 -0.00030235 621.8186944725685 99.144 0.11421 92.968 92.894 93.009 -6.1757 9 6 2 0 0 0 0.29564 1 65958 65958 9.3831 1.473 1 21661000 + 15551 27183 10597 10802 18683 18683 0.0115314603697243 GCTFDSTP 8 Unmodified _GCTFDSTP_ 0 0 0 REV__ENST00000481928.1_1_2:232577883-232578096:+|nuORF REV__ENST00000481928.1_1_2:232577883-232578096:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 827.3240966796875 1 827.323996 826.316719 1.6814 0.0013911 -0.77135 -0.00063816 0.91009 0.00075294 827.3231868429363 103.67 0.042877 97.499 97.481 97.523 -6.1757 16 11 2 0 0 0 0.80722 1 69498 69498 2.3027 0 1 5353800 + 15552 27710 10598 10803 18684 18684 -0.10338664476125814 GCTHILLMQ 9 Unmodified _GCTHILLMQ_ 0 0 0 REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF REV__ENST00000425350.1_1_13:49151308-49151716:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.2591247558594 2 508.256805 1014.49906 NaN NaN NaN NaN NaN NaN NaN 18.96 1 16.338 15.838 16.838 -2.6215 0 0 0 0.36554 1 10015 10015 21.747 3.6117 1 + 15553 26892 10599 10804 18685 18685 -0.007612283350113103 GCVASLFDHAF 11 Unmodified _GCVASLFDHAF_ 0 0 0 REV__ENST00000379375.5_1_6:12290828-12292586:+|nuORF REV__ENST00000379375.5_1_6:12290828-12292586:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 583.7238159179688 2 583.768591 1165.52263 NaN NaN NaN NaN NaN NaN NaN 93.782 1 87.606 87.106 88.106 -6.1757 0 0 0 0.76159 1 62094 62094 13.906 3.0821 1 + 15554 26282 10600 10805 18686 18686 -0.05351091296847699 GCVGPHAF 8 Unmodified _GCVGPHAF_ 0 0 0 REV__ENSG00000138829|ENST00000262464|FBN2 REV__ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.181884765625 2 394.181423 786.348294 1.3391 0.00052783 1.1064 0.00043614 2.4455 0.00096397 394.1822493687913 21.776 0.47839 19.041 18.711 19.19 -2.7348 55 30 3 0 0 0 0.80624 1 11699 11699 2.8892 0 1 6176000 + 15555 20376 10601 10806 18687 18687 -0.05342626931508221 GCVVPGMI 8 Unmodified _GCVVPGMI_ 0 0 0 REV__ENST00000496978.5_1_4:154125600-154143423:+|nuORF REV__ENST00000496978.5_1_4:154125600-154143423:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.1975708007812 2 388.195685 774.376817 NaN NaN NaN NaN NaN NaN NaN 20.476 1 17.783 17.283 18.283 -2.693 0 0 0 0.9706 1 10910 10910 6.3541 3.4649 1 + 15556 27661 10602 10807 18688 18688 -0.019396453465788 GCYDPGQHVF 10 Unmodified _GCYDPGQHVF_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.8026123046875 2 561.737291 1121.46003 1.3082 0.00073489 2.1779 0.0012234 3.4862 0.0019583 561.7393015477652 50.408 0.27532 44.869 44.695 44.971 -5.5391 23 17 2 0 0 0 0.23227 1 31522 31522 6.7232 1.9672 1 13199000 15557 2865 10603 10808 18689 18689 -0.09584237365038462 GCYLREHTAW 10 Unmodified _GCYLREHTAW_ 0 0 0 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000160551|Q7L7X3-3|TAOK1;ENSG00000160551|ENST00000261716|TAOK1;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2 ENSG00000149930|ENST00000308893|TAOK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5272216796875 3 412.525719 1234.55533 1.4213 0.00058633 0.054684 2.2558E-05 1.476 0.00060889 412.5256666746534 37.565 0.33128 33.282 33.102 33.434 -4.2835 38 19 3 0 0 0 0.1942 1 21991 21991 23.801 0 1 14577000 15558 6045;16263 10604 10809 18690 18690 -0.052568841739912386 GCYLYFSG 8 Unmodified _GCYLYFSG_ 0 0 0 REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1 REV__nc|ENSG00000140320|Q8TBE0-3|BAHD1 MSMS AL20221201_MKP_PDAC_01 4 455.1958312988281 2 455.194196 908.37384 NaN NaN NaN NaN NaN NaN NaN 35.877 1 31.684 31.184 32.184 -4.1928 0 0 0 0.9706 1 20881 20881 6.3541 0 1 + 15559 20460 10605 10810 18691 18691 -0.0840119719972563 GCYPLNNHLF 10 Unmodified _GCYPLNNHLF_ 0 0 0 nc|ENSG00000162458|Q8WUP2-3|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;ENST00000509138.1_1_1:16103614-16111153:+|nuORF;ENST00000514156.1_1_1:16103511-16111153:+|nuORF;ENST00000312173.5_1_11:46164605-46165142:+|nuORF nc|ENSG00000162458|Q8WUP2-3|FBLIM1 nc|ENSG00000162458|Q8WUP2-3|FBLIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2764282226562 2 589.276583 1176.53861 0.22987 0.00013546 -0.91101 -0.00053684 -0.68114 -0.00040138 589.2758121734439 58.394 0.24121 57.903 57.741 57.982 -0.49079 16 11 2 0 0 0 0.19662 1 31744 31744 34.102 3.8776 1 2179800 15560 6864 10606 10811 18692 18692 -0.04259385059935994 GCYPLNNHLF 10 Unmodified _GCYPLNNHLF_ 0 0 0 nc|ENSG00000162458|Q8WUP2-3|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;ENST00000509138.1_1_1:16103614-16111153:+|nuORF;ENST00000514156.1_1_1:16103511-16111153:+|nuORF;ENST00000312173.5_1_11:46164605-46165142:+|nuORF nc|ENSG00000162458|Q8WUP2-3|FBLIM1 nc|ENSG00000162458|Q8WUP2-3|FBLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2769165039062 2 589.276583 1176.53861 1.1268 0.000664 -0.70496 -0.00041542 0.42184 0.00024858 589.27635697709 63.785 0.89792 57.609 57.306 58.204 -6.1757 166 48 5 0 0 0 0.037795 2 41123 41123;41256 64.236 3.9342 1 507060000 15561 6864 10606 10811 18693;18694 18693 -0.04259385059935994 GCYTDFHVDF 10 Unmodified _GCYTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.2431640625 2 602.242406 1202.47026 0.53381 0.00032148 -0.00074769 -4.5029E-07 0.53306 0.00032103 602.2423557583144 71.517 0.63457 65.341 64.985 65.619 -6.1757 70 32 3 0 0 0 2.5484E-08 3 46604 46604;46728;46852 149.99 3.2027 1 63832000 15562 8288 10607 10812 18695;18696;18697 18695 -0.12287674430444895 GCYTDFHVDF 10 Unmodified _GCYTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MSMS AL20221201_MKP_PDAC_01 4 602.2426147460938 2 602.242406 1202.47026 NaN NaN NaN NaN NaN NaN NaN 70.608 1 64.432 63.932 64.932 -6.1757 0 0 0 0.00072657 1 46148 46148 111.29 3.29 1 15563 8288 10607 10812 18698 18698 -0.12287674430444895 GCYTDFHVDF 10 Unmodified _GCYTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MSMS AL20221201_MKP_PDAC_01 4 602.243408203125 2 602.242406 1202.47026 NaN NaN NaN NaN NaN NaN NaN 70.881 1 64.705 64.205 65.205 -6.1757 0 0 0 6.0236E-06 1 46329 46329 115.69 3.0988 1 15564 8288 10607 10812 18699 18699 -0.12287674430444895 GCYVKDLSRL 10 Unmodified _GCYVKDLSRL_ 0 0 0 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2057495117188 3 385.205986 1152.59613 1.0235 0.00039425 -0.52278 -0.00020138 0.5007 0.00019287 385.20589301368005 44.468 0.9371 39.616 39.343 40.28 -4.852 165 70 4 0 0 0 0.03037 2 27087 27087;27221 59.013 7.5803 1 190030000 15565 8496 10608 10813 18700;18701 18700 0.025934571456446065 GCYVKDLSRL 10 Unmodified _GCYVKDLSRL_ 0 0 0 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 ENSG00000175215|ENST00000398073|CTDSP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3056640625 2 577.305341 1152.59613 0.59342 0.00034259 -0.42193 -0.00024358 0.1715 9.9005E-05 577.305163910696 44.164 0.97176 39.312 38.946 39.918 -4.852 167 72 4 0 0 0 0.039874 2 27149 27149;27273 63.227 3.8591 1 66448000 15566 8496 10608 10813 18702;18703 18702 0.025934571456446065 GCYYPFRTFF 10 Unmodified _GCYYPFRTFF_ 0 0 0 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.7945556640625 2 650.794609 1299.57467 1.1326 0.00073711 -0.2449 -0.00015938 0.88773 0.00057773 650.7944629873816 96.999 0.31857 90.823 90.656 90.974 -6.1757 49 18 3 0 0 0 3.9249E-05 2 64338 64219;64338 121.53 3.7592 1 70430000 15567 4783 10609 10814 18704;18705 18705 -0.06313927883093129 GDCCCCSQED 10 Unmodified _GDCCCCSQED_ 0 0 0 ENST00000404569.5_3_22:39905450-39907313:+|nuORF ENST00000404569.5_3_22:39905450-39907313:+|nuORF ENST00000404569.5_3_22:39905450-39907313:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.6353759765625 2 531.635202 1061.25585 NaN NaN NaN NaN NaN NaN NaN 17.462 1 17.467 16.967 17.967 0.0050564 0 0 0 1.0061 1 8808 8808 0 0 1 15568 12916 10610 10815 18706 18706 -0.27232628904516787 GDCEAALQAEQ 11 Unmodified _GDCEAALQAEQ_ 0 0 0 ENST00000258807.5_1_14:24777962-24780611:-|nuORF ENST00000258807.5_1_14:24777962-24780611:-|nuORF ENST00000258807.5_1_14:24777962-24780611:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.6935729980469 3 378.829244 1133.4659 1.1022 0.00041753 1.8988 0.00071932 3.001 0.0011368 378.83011571643345 35.355 0.29583 31.26 31.12 31.416 -4.0951 26 17 2 0 0 0 0.29445 1 20411 20411 5.8681 1.462 1 6087300 15569 11208 10611 10816 18707 18707 -0.09549183644026016 GDEFDCREYN 10 Unmodified _GDEFDCREYN_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2354736328125 2 624.23531 1246.45607 NaN NaN NaN NaN NaN NaN NaN 3.6555 1 3.6555 3.1555 4.1555 0 0 0 0 1.0024 1 1772 1772 0.40072 0 1 + 15570 24200 10612 10817 18708 18708 -0.15730371649397057 GDEGPKGPP 9 Unmodified _GDEGPKGPP_ 0 0 0 REV__ENSG00000204262|ENST00000374866|COL5A2 REV__ENSG00000204262|ENST00000374866|COL5A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.206787109375 2 427.20615 852.397747 0.54312 0.00023202 0.60099 0.00025674 1.1441 0.00048877 427.20655467475984 60.398 0.26871 60.398 60.225 60.494 0 18 11 2 0 0 0 0.51218 1 33698 33698 6.7232 1.9672 1 960380 + 15571 24152 10613 10818 18709 18709 -0.03435640441716714 GDERISPPV 9 Unmodified _GDERISPPV_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 MSMS AL20221201_MKP_PDAC_01 4 485.2525329589844 2 485.253631 968.49271 NaN NaN NaN NaN NaN NaN NaN 57.805 1 51.777 51.277 52.277 -6.0275 0 0 0 0.6032 1 36992 36992 12.532 0.89125 1 + 15572 20944 10614 10819 18710 18710 0.0072029302948521945 GDFGIKFNI 9 Unmodified _GDFGIKFNI_ 0 0 0 ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1 ENSG00000079739|ENST00000371084|PGM1 ENSG00000079739|ENST00000371084|PGM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.76953125 2 505.768917 1009.52328 0.21503 0.00010875 0.52609 0.00026608 0.74112 0.00037484 505.76919710793425 46.78 0.29184 46.443 46.29 46.582 -0.33664 37 14 3 0 0 0 0.19127 1 25017 25017 24.021 1.2843 1 19044000 15573 1283 10615 10820 18711 18711 0.018900714145274833 GDFLHKNVDVF 11 Unmodified _GDFLHKNVDVF_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8281860351562 2 645.827495 1289.64044 0.41396 0.00026734 -0.2034 -0.00013136 0.21055 0.00013598 646.329025492057 75.011 0.26278 75.057 74.92 75.183 0.045967 26 12 3 0 0 0 0.30985 1 41337 41337 26.268 0.86883 1 7700200 + 15574 22295 10616 10821 18712 18712 0.0072018456346540916 GDFLTFLRR 9 Unmodified _GDFLTFLRR_ 0 0 0 ENSG00000151422|ENST00000281092|FER;nc|ENSG00000151422|P16591-2|FER;nc|ENSG00000151422|P16591-3|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8154296875 2 562.81419 1123.61383 1.2268 0.00069045 0.57683 0.00032465 1.8036 0.0010151 562.8150105323136 57.998 0.47845 57.932 57.593 58.072 -0.066036 39 23 3 0 0 0 0.36964 1 31607 31607 13.906 3.8321 1 4806300 15575 6112 10617 10822 18713 18713 0.05696540462804478 GDFMRYHY 8 Unmodified _GDFMRYHY_ 0 0 0 ENST00000489591.5_1_17:39969413-39975983:+|nuORF;ENSG00000141756|ENST00000321562|FKBP10 ENST00000489591.5_1_17:39969413-39975983:+|nuORF ENST00000489591.5_1_17:39969413-39975983:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8025512695312 2 544.734551 1087.45455 2.456 0.0013379 -0.62724 -0.00034168 1.8287 0.00099617 544.7344952061261 99.956 0.081497 99.92 99.88 99.962 -0.036301 6 2 3 0 0 0 0.80143 1 55528 55528 5.7604 1.4312 1 892900 15576 5374 10618 10823 18714 18714 -0.08567916156835054 GDIVMTQSPL 10 Unmodified _GDIVMTQSPL_ 0 0 0 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1060.9931640625 1 1060.53432 1059.52705 0.30849 0.00032717 0.58276 0.00061804 0.89125 0.0009452 1060.535208845949 91.103 0.31662 90.608 90.44 90.756 -0.49458 25 14 2 0 0 0 0.52888 1 49742 49742 14.838 0 1 1201300 15577 16577 10619 10824 18715 18715 -0.00033626873914727184 GDIVMTQSPL 10 Unmodified _GDIVMTQSPL_ 0 0 0 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 nc|ENSG00000244116|A0A075B6P5|IGKV2-28 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1060.53432 1059.52705 0.96522 0.0010237 -1.6486 -0.0017484 -0.68336 -0.00072472 1060.5334904982433 90.475 0.41515 90.518 90.358 90.773 0.042175 -0.045216 -0.00084323 NaN 14.838 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 24504000 15578 16577 10619 10824 -0.00033626873914727184 GDKDKYQVIF 10 Unmodified _GDKDKYQVIF_ 0 0 0 REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8162841796875 2 606.816596 1211.61864 -0.51562 -0.00031289 0.36953 0.00022424 -0.14609 -8.8651E-05 606.8165017749436 78.255 0.2562 77.769 77.608 77.864 -0.48596 22 10 3 0 0 0 0.20962 1 42843 42843 32.786 3.7041 1 2031300 + 15579 22313 10620 10825 18716 18716 0.02129379814891763 GDKDKYQVIF 10 Unmodified _GDKDKYQVIF_ 0 0 0 REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7637939453125 2 606.816596 1211.61864 -0.51562 -0.00031289 0.36953 0.00022424 -0.14609 -8.8651E-05 606.8165017749436 78.255 0.2562 77.769 77.608 77.864 -0.48596 22 10 3 0 0 0 0.21977 1 42814 42814 22.736 3.4793 1 2031300 + 15580 22313 10620 10825 18717 18717 0.02129379814891763 GDKSELNEIK 10 Unmodified _GDKSELNEIK_ 0 0 0 ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7959594726562 2 566.79586 1131.57717 0.31178 0.00017672 2.3411 0.0013269 2.6529 0.0015037 566.7963366626293 79.96 0.1192 79.96 79.911 80.03 0 11 6 2 0 0 0 0.47869 1 44411 44411 17.443 0.32975 1 1183900 15581 5048 10621 10826 18718 18718 0.016641990555854136 GDKVIEEIF 9 Unmodified _GDKVIEEIF_ 0 0 0 REV__nc|ENSG00000164597|Q9UP83-3|COG5 REV__nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2788696289062 2 525.279315 1048.54408 0.3549 0.00018642 0.59468 0.00031237 0.94958 0.0004988 525.2793840108019 72.02 0.43934 72.02 71.819 72.258 0 26 20 2 0 0 0 0.43463 1 40194 40194 10.824 0 1 1710400 + 15582 21926 10622 10827 18719 18719 0.02174617003538515 GDLNLAPLPP 10 Unmodified _GDLNLAPLPP_ 0 0 0 ENST00000489615.5_1_1:174769357-174769462:+|nuORF ENST00000489615.5_1_1:174769357-174769462:+|nuORF ENST00000489615.5_1_1:174769357-174769462:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7835998535156 2 503.782025 1005.5495 0.6975 0.00035139 0.035715 1.7993E-05 0.73321 0.00036938 503.7827334172048 52.955 0.20325 52.955 52.836 53.039 0 18 9 3 0 0 0 0.27276 1 29335 29335 29.082 8.667 1 1828700 15583 14241 10623 10828 18720 18720 0.04694340585979262 GDLNWCFNER 10 Unmodified _GDLNWCFNER_ 0 0 0 REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF REV__ENST00000442552.7_1_1:17085068-17087541:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5186157226562 3 418.517112 1252.52951 NaN NaN NaN NaN NaN NaN NaN 23.689 1 23.701 23.201 24.201 0.012396 0 0 0 1.0029 1 12088 12088 0.12286 0 1 + 15584 27102 10624 10829 18721 18721 -0.08665778416298053 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 879.462646484375 1 879.461081 878.453805 -0.24319 -0.00021388 1.0613 0.00093338 0.81811 0.0007195 879.4619079245266 95.752 0.39981 95.384 95.218 95.618 -0.36815 49 23 3 0 0 0 0.75262 2 52333 52237;52333 12.532 12.532 1 1473900 + 15585 23110 10625 10830 18722;18723 18723 0.00971612465752969 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2349243164062 2 440.234179 878.453805 0.34803 0.00015321 0.95054 0.00041846 1.2986 0.00057168 440.23462523566803 95.813 0.2805 95.445 95.273 95.554 -0.36814 34 17 2 0 0 0 0.74163 2 52356 52260;52356 13.508 4.1604 1 973150 + 15586 23110 10625 10830 18724;18725 18725 0.00971612465752969 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 879.1392822265625 1 879.461081 878.453805 -0.24319 -0.00021388 1.0613 0.00093338 0.81811 0.0007195 879.4619079245266 95.752 0.39981 95.384 95.218 95.618 -0.36815 49 23 3 0 0 0 8.7369 1 52237 52237 7.9102 7.9102 1 1473900 + 15587 23110 10625 10830 18726 18726 0.00971612465752969 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2350463867188 2 440.234179 878.453805 2.3934 0.0010536 -0.42053 -0.00018513 1.9728 0.00086851 440.2340182977165 95.305 0.4035 95.309 95.106 95.51 0.0041504 24 14 2 0 0 0 0.74163 2 52921 52921;53037 13.508 0.97634 1 1799000 + 15588 23110 10625 10830 18727;18728 18727 0.00971612465752969 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 879.4656372070312 1 879.461081 878.453805 2.3835 0.0020962 1.4778 0.0012997 3.8614 0.0033959 879.4620894637028 95.357 0.41989 95.361 95.133 95.553 0.004158 30 15 3 0 0 0 0.6895 1 53025 53025 18.135 4.6271 1 4947800 + 15589 23110 10625 10830 18729 18729 0.00971612465752969 GDPAFFLL 8 Unmodified _GDPAFFLL_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 440.234179 878.453805 0.34803 0.00015321 0.95054 0.00041846 1.2986 0.00057168 440.23462523566803 95.813 0.2805 95.445 95.273 95.554 -0.36814 0.068142 0.0005518 NaN 13.508 34 17 2 NaN NaN NaN NaN 0 NaN NaN 0 973150 + 15590 23110 10625 10830 0.00971612465752969 GDPPHHHP 8 Unmodified _GDPPHHHP_ 0 0 0 ENST00000493091.5_1_7:99954396-99954507:+|nuORF;ENST00000608825.1_3_7:99954396-99956429:+|nuORF;ENST00000452089.5_3_7:99950875-99964972:+|nuORF ENST00000493091.5_1_7:99954396-99954507:+|nuORF ENST00000493091.5_1_7:99954396-99954507:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 893.401611328125 1 893.401275 892.393999 1.0895 0.00097338 -0.42756 -0.00038198 0.66196 0.0005914 893.4013595714092 104.46 0.078255 98.283 98.249 98.327 -6.1757 28 11 4 0 0 0 0.80975 1 69947 69947 0.79363 0 1 59831000 15591 13536 10626 10831 18730 18730 -0.05650265424912959 GDPSQPVR 8 Unmodified _GDPSQPVR_ 0 0 0 ENST00000609835.5_1_20:3193963-3199407:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA ENST00000609835.5_1_20:3193963-3199407:+|nuORF ENST00000609835.5_1_20:3193963-3199407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 855.4362182617188 1 855.431906 854.42463 -0.77002 -0.0006587 2.663 0.002278 1.893 0.0016193 855.4337888320315 51.412 0.16917 50.999 50.912 51.081 -0.41351 14 8 2 0 0 0 0.30525 1 27707 27707 54.774 10.367 1 4769600 15592 3906 10627 10832 18731 18731 -0.008405318305221954 GDPVQLLTI 9 Unmodified _GDPVQLLTI_ 0 0 0 REV__ENSG00000007237|ENST00000432992|GAS7 REV__ENSG00000007237|ENST00000432992|GAS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.27685546875 2 478.276575 954.538597 0.39118 0.00018709 0.35977 0.00017207 0.75096 0.00035916 478.2767863216357 66.301 0.35534 66.301 66.135 66.491 0 29 15 2 0 0 0 0.1773 1 36969 36969 25.399 1.3787 1 2239300 + 15593 17007 10628 10833 18732 18732 0.0595093821170849 GDREVTSF 8 Unmodified _GDREVTSF_ 0 0 0 ENST00000603475.1_1_9:90582379-90582652:-|nuORF ENST00000603475.1_1_9:90582379-90582652:-|nuORF ENST00000603475.1_1_9:90582379-90582652:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.4269409179688 1 910.426487 909.41921 1.2227 0.0011132 0.84879 0.00077277 2.0715 0.0018859 910.4274294655448 104.47 0.08046 98.293 98.247 98.327 -6.1757 31 12 4 0 0 0 0.80975 1 69944 69944 0.79363 0 1 30348000 15594 15831 10629 10834 18733 18733 -0.03912255412978993 GDRMEDTLHI 10 Unmodified _GDRMEDTLHI_ 0 0 0 REV__ENST00000457356.8_1_8:72965957-72966179:+|nuORF REV__ENST00000457356.8_1_8:72965957-72966179:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5252380371094 3 396.188884 1185.54482 1.3626 0.00053983 -0.85273 -0.00033784 0.50982 0.00020199 396.18831296134954 21.249 0.098995 18.556 18.507 18.606 -2.693 6 5 2 0 0 0 0.68719 1 11331 11331 2.086 0 1 2936000 + 15595 27268 10630 10835 18734 18734 -0.040529116190555214 GDRPIPVTFKR 11 Unmodified _GDRPIPVTFKR_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD;ENST00000472677.1_1_22:50635751-50636018:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2513427734375 3 429.250695 1284.73025 0.90829 0.00038989 -0.46973 -0.00020163 0.43856 0.00018825 429.2504256496987 75.454 1.8608 69.279 68.759 70.62 -6.1757 201 101 3 0 0 0 0.5551 1 49583 49583 7.846 0 1 23716000 15596 8011 10631 10836 18735 18735 0.09927858962691971 GDSGLLPLIFL 11 Unmodified _GDSGLLPLIFL_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.83447265625 2 572.834257 1143.65396 1.3485 0.00077244 0.26905 0.00015412 1.6175 0.00092657 572.8342935015479 98.021 0.3737 91.845 91.627 92 -6.1757 53 23 3 0 0 0 0.064513 1 65018 65018 47.749 5.7931 1 38385000 15597 9799 10632 10837 18736 18736 0.08788042342712288 GDSMFKTLNQA 11 Unmodified _GDSMFKTLNQA_ 0 0 0 REV__nc|ENSG00000184887|Q96KE9-2|BTBD6 REV__nc|ENSG00000184887|Q96KE9-2|BTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.79345703125 2 606.289888 1210.56522 0.31071 0.00018838 0.80887 0.00049041 1.1196 0.00067879 606.2906172595021 59.706 0.2412 59.653 59.535 59.776 -0.053062 27 11 3 0 0 0 0.50515 1 32540 32540 16.149 0 1 7590900 + 15598 23450 10633 10838 18737 18737 -0.03163740959257666 GDSNPPFQQF 10 Unmodified _GDSNPPFQQF_ 0 0 0 REV__MLT1L_dup10991|chr19:48704452-48704884:-|2.0721407261463693|0.1256829385754321|4.04|178.0|17|1|anti-sense REV__MLT1L_dup10991|chr19:48704452-48704884:-|2.0721407261463693|0.1256829385754321|4.04|178.0|17|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7545166015625 2 568.753995 1135.49344 0.33064 0.00018805 0.58335 0.00033178 0.91399 0.00051983 568.7545378267776 78.864 0.31345 78.864 78.66 78.974 0 25 14 2 0 0 0 0.71276 1 43766 43766 1.4819 0.68827 1 378220 + 15599 29471 10634 10839 18738 18738 -0.06888912321483076 GDVVSDTKRTI 11 Unmodified _GDVVSDTKRTI_ 0 0 0 ENST00000479934.5_1_3:153998457-154002376:-|nuORF ENST00000479934.5_1_3:153998457-154002376:-|nuORF ENST00000479934.5_1_3:153998457-154002376:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.822021484375 2 595.822409 1189.63027 0.86811 0.00051724 -2.2286 -0.0013278 -1.3604 -0.00081058 595.821294525915 101.1 0.067703 94.926 94.889 94.956 -6.1757 5 3 2 0 0 0 0.46578 1 67782 67782 18.146 1.9972 1 16466000 15600 14048 10635 10840 18739 18739 0.04303576838242407 GDWGGSHI 8 Unmodified _GDWGGSHI_ 0 0 0 REV__ENST00000394164.5_1_14:73603805-73603898:+|nuORF REV__ENST00000394164.5_1_14:73603805-73603898:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.685546875 2 414.685385 827.356216 NaN NaN NaN NaN NaN NaN NaN 36.953 1 32.67 32.17 33.17 -4.2835 0 0 0 0.97444 1 21634 21634 4.756 0 1 + 15601 26437 10636 10841 18740 18740 -0.06436776410384937 GDYLGTGQTA 10 Unmodified _GDYLGTGQTA_ 0 0 0 REV__ENST00000463733.5_1_7:127230086-127231350:+|nuORF REV__ENST00000463733.5_1_7:127230086-127231350:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.4522705078125 1 982.447616 981.44034 1.5402 0.0015132 0.39657 0.00038961 1.9368 0.0019028 982.4476096378805 103.95 0.06353 97.775 97.739 97.803 -6.1757 44 20 3 0 0 0 0.67459 1 69644 69644 5.7319 0 1 14129000 + 15602 16942 10637 10842 18741 18741 -0.0511229010412535 GEAEVAEHWF 10 Unmodified _GEAEVAEHWF_ 0 0 0 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7626342773438 2 587.76182 1173.50909 0.061569 3.6188E-05 1.2749 0.00074933 1.3365 0.00078551 587.7628001026777 62.725 0.23494 62.725 62.611 62.846 0 16 9 2 0 0 0 0.52888 1 34983 34983 14.838 0.93222 1 1159000 15603 16558 10638 10843 18742 18742 -0.07072625804448762 GEAGLALA 8 Unmodified _GEAGLALA_ 0 0 0 ENST00000521314.5_1_16:67198707-67203685:+|nuORF;ENSG00000102878|ENST00000521374|HSF4 ENST00000521314.5_1_16:67198707-67203685:+|nuORF ENST00000521314.5_1_16:67198707-67203685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.193359375 2 351.195054 700.375555 -0.14778 -5.1898E-05 -3.1518 -0.0011069 -3.2996 -0.0011588 351.19308243753545 52.225 0.42791 52.225 52.039 52.467 0 21 18 2 0 0 0 0.80676 1 28962 28962 2.5775 0 1 691660 15604 2072 10639 10844 18743 18743 0.013381798805085054 GEALAPPFS 9 Unmodified _GEALAPPFS_ 0 0 0 REV__ENSG00000149922|ENST00000395224|TBX6 REV__ENSG00000149922|ENST00000395224|TBX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.7291870117188 2 444.726718 887.438883 NaN NaN NaN NaN NaN NaN NaN 59.31 1 59.31 58.81 59.81 0 0 0 0 0.76439 1 33042 33042 7.2892 0.56607 1 + 15605 21015 10640 10845 18744 18744 -0.009338794022369257 GEALTDFSL 9 Unmodified _GEALTDFSL_ 0 0 0 CON__P50448 CON__P50448 CON__P50448 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7349548339844 2 476.73474 951.454927 0.24979 0.00011908 0.013298 6.3396E-06 0.26308 0.00012542 476.73487382417585 63.842 0.4557 63.842 63.567 64.022 0 35 18 3 0 0 0 0.2143 1 35676 35676 21.747 0 1 3027700 + 15606 179 10641 10846 18745 18745 -0.022742179560054865 GEDDEEDDDF 10 Unmodified _GEDDEEDDDF_ 0 0 0 ENSG00000198176|ENST00000375370|TFDP1;ENST00000453595.1_1_X:36980271-36981156:-|nuORF;nc|ENSG00000198176|Q14186-2|TFDP1;ENST00000544902.5_1_13:114277566-114294579:+|nuORF ENSG00000198176|ENST00000375370|TFDP1 ENSG00000198176|ENST00000375370|TFDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.1867065429688 2 593.188745 1184.36294 0.27207 0.00016139 0.4299 0.00025501 0.70197 0.0004164 593.1884421111183 52.897 0.26685 52.897 52.773 53.039 0 16 12 2 0 0 0 0.69064 1 29303 29303 3.9444 0 1 1607100 15607 10058 10642 10847 18746 18746 -0.2218701762164983 GEDDNAEGNY 10 Unmodified _GEDDNAEGNY_ 0 0 0 REV__ENSG00000122012|ENST00000502798|SV2C REV__ENSG00000122012|ENST00000502798|SV2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.1956787109375 2 542.196707 1082.37886 0.24532 0.00013301 -1.9384 -0.001051 -1.693 -0.00091796 542.1956345674336 63.454 0.31779 63.454 63.295 63.612 0 30 17 2 0 0 0 0.69377 1 35366 35366 3.5965 1.9439 1 3883400 + 15608 19323 10643 10848 18747 18747 -0.15903266594068555 GEDEEVDDF 9 Unmodified _GEDEEVDDF_ 0 0 0 REV__ENST00000492213.5_1_22:38349794-38354383:+|nuORF REV__ENST00000492213.5_1_22:38349794-38354383:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.244384765625 2 527.696009 1053.37746 0.47464 0.00025047 0.33965 0.00017923 0.81429 0.0004297 527.6960173500012 71.943 0.27399 71.466 71.341 71.615 -0.47609 16 10 2 0 0 0 0.21367 1 39329 39329 4.756 0 1 474400 + 15609 18018 10644 10849 18748 18748 -0.1470890068285371 GEDGGRRENF 10 Unmodified _GEDGGRRENF_ 0 0 0 ENST00000216832.8_1_14:39644467-39644542:+|nuORF ENST00000216832.8_1_14:39644467-39644542:+|nuORF ENST00000216832.8_1_14:39644467-39644542:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2932739257812 2 568.757601 1135.50065 0.50297 0.00028607 -1.4783 -0.00084078 -0.9753 -0.00055471 568.7567512633806 57.931 0.22859 57.441 57.369 57.598 -0.48974 19 10 3 0 0 0 0.23412 1 31542 31542 5.7319 0 1 1036700 15610 11015 10645 10850 18749 18749 -0.061681797210667355 GEDGGRRENF 10 Unmodified _GEDGGRRENF_ 0 0 0 ENST00000216832.8_1_14:39644467-39644542:+|nuORF ENST00000216832.8_1_14:39644467-39644542:+|nuORF ENST00000216832.8_1_14:39644467-39644542:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.757601 1135.50065 0.69835 0.00039719 -3.3458 -0.001903 -2.6475 -0.0015058 568.7558751897645 57.315 0.33302 57.315 57.177 57.51 0 -0.063185 -0.00016465 NaN 5.7319 45 14 4 NaN NaN NaN NaN 0 NaN NaN 0 15292000 15611 11015 10645 10850 -0.061681797210667355 GEEDEQRE 8 Unmodified _GEEDEQRE_ 0 0 0 ENST00000220562.8_1_8:28608351-28608444:+|nuORF ENST00000220562.8_1_8:28608351-28608444:+|nuORF ENST00000220562.8_1_8:28608351-28608444:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.5267944335938 2 496.201793 990.389032 -0.44355 -0.00022009 -2.0341 -0.0010093 -2.4776 -0.0012294 496.20058592294123 55.864 0.19635 55.864 55.719 55.916 0 21 14 2 0 0 0 8.7369 1 31066 31066 9.3474 0 1 5728600 15612 11028 10646 10851 18750 18750 -0.10654658868838851 GEEDLEGRPS 10 Unmodified _GEEDLEGRPS_ 0 0 0 REV__nc|ENSG00000178568|Q15303-2|ERBB4 REV__nc|ENSG00000178568|Q15303-2|ERBB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7467651367188 2 544.746367 1087.47818 0.5972 0.00032532 -1.179 -0.00064225 -0.58178 -0.00031692 544.7460813579636 60.504 0.21741 60.504 60.407 60.625 0 17 9 2 0 0 0 0.63399 1 33760 33760 9.3831 0.63772 1 1684100 + 15613 23051 10647 10852 18751 18751 -0.06205823909317587 GEEDLEGRPS 10 Unmodified _GEEDLEGRPS_ 0 0 0 REV__nc|ENSG00000178568|Q15303-2|ERBB4 REV__nc|ENSG00000178568|Q15303-2|ERBB4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 544.746367 1087.47818 0.5972 0.00032532 -1.179 -0.00064225 -0.58178 -0.00031692 544.7460813579636 60.504 0.21741 60.504 60.407 60.625 0 0 0 NaN 9.3831 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1684100 + 15614 23051 10647 10852 -0.06205823909317587 GEEENRPEMGS 11 Unmodified _GEEENRPEMGS_ 0 0 0 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.75439453125 2 617.753866 1233.49318 0.27535 0.0001701 0.66513 0.00041089 0.94049 0.00058099 617.7543781522714 52.46 0.30964 52.46 52.287 52.596 0 38 13 4 0 0 0 0.50515 1 28998 28998 16.149 3.9084 1 16704000 + 15615 17728 10648 10853 18752 18752 -0.11422700103639727 GEEENRPEMGS 11 Unmodified _GEEENRPEMGS_ 0 0 0 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 617.753866 1233.49318 0.27535 0.0001701 0.66513 0.00041089 0.94049 0.00058099 617.7543781522714 52.46 0.30964 52.46 52.287 52.596 0 -0.092263 0.00017007 NaN 16.149 38 13 4 NaN NaN NaN NaN 0 NaN NaN 0 16704000 + 15616 17728 10648 10853 -0.11422700103639727 GEEENRPEMGS 11 Unmodified _GEEENRPEMGS_ 0 0 0 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 REV__ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 617.753866 1233.49318 0.44144 0.0002727 0.1482 9.1552E-05 0.58965 0.00036426 617.7540343467253 53.096 0.14858 52.644 52.554 52.703 -0.45173 0.092263 -0.0004686 NaN 16.149 13 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1021500 + 15617 17728 10648 10853 -0.11422700103639727 GEEIFFFC 8 Unmodified _GEEIFFFC_ 0 0 0 ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14 ENST00000414996.1_1_3:9710441-9730764:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2144470214844 2 496.215129 990.415705 -0.32966 -0.00016358 0.95612 0.00047444 0.62647 0.00031086 496.21552140487626 56.002 0.23429 56.002 55.904 56.138 0 15 11 2 0 0 0 0.74163 1 31131 31131 13.508 1.8676 1 3037800 15618 7057 10649 10854 18753 18753 -0.0798864151121279 GEELSPTLARP 11 Unmodified _GEELSPTLARP_ 0 0 0 ENST00000592322.5_1_19:38901850-38916815:-|nuORF ENST00000592322.5_1_19:38901850-38916815:-|nuORF ENST00000592322.5_1_19:38901850-38916815:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5442810058594 3 390.543544 1168.6088 0.61553 0.00024039 1.3263 0.00051797 1.9418 0.00075836 390.54415917157087 17.028 0.18098 14.441 14.35 14.531 -2.5866 61 33 2 0 0 0 0.631 1 8842 8842 9.7643 5.3581 1 5072700 15619 15718 10650 10855 18754 18754 0.031241918095247456 GEEQPGLLH 9 Unmodified _GEEQPGLLH_ 0 0 0 REV__nc|ENSG00000142655|O75381-2|PEX14 REV__nc|ENSG00000142655|O75381-2|PEX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.245361328125 2 490.245806 978.47706 1.0667 0.00052293 -0.6636 -0.00032532 0.40307 0.0001976 490.24503987713007 36.114 0.37325 31.921 31.664 32.037 -4.1928 48 22 3 0 0 0 0.46577 1 21083 21083 9.3474 1.4373 1 12864000 + 15620 29673 10651 10856 18755 18755 -0.013039934875678227 GEEVRRVL 8 Unmodified _GEEVRRVL_ 0 0 0 ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2777404785156 2 479.277441 956.540328 0.59788 0.00028655 0.096534 4.6267E-05 0.69441 0.00033282 479.27735427843936 86.479 0.59687 85.976 85.699 86.296 -0.50318 69 24 4 0 0 0 0.80992 1 47403 47403 0.69038 0 1 12016000 15621 6777 10652 10857 18756 18756 0.06031992020336929 GEEYAKMIERL 11 Unmodified _GEEYAKMIERL_ 0 0 0 REV__nc|ENSG00000276850|P13928-2|ANXA8 REV__nc|ENSG00000276850|P13928-2|ANXA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.8974914550781 3 446.895589 1337.66494 4.3774 0.0019562 -0.91239 -0.00040774 3.465 0.0015485 446.8952589153165 98.67 0.24087 98.642 98.506 98.746 -0.028282 23 8 3 0 0 0 0.58219 1 54807 54807 9.7643 0 1 7708800 + 15622 30004 10653 10858 18757 18757 0.00961076654698445 GEEYAKMIERL 11 Unmodified _GEEYAKMIERL_ 0 0 0 REV__nc|ENSG00000276850|P13928-2|ANXA8 REV__nc|ENSG00000276850|P13928-2|ANXA8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 446.895589 1337.66494 0.28178 0.00012592 1.9369 0.0008656 2.2187 0.00099153 446.8968145837831 98.838 0.14966 98.645 98.572 98.721 -0.19321 0.0016006 0.0028832 NaN 9.7643 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 490480 + 15623 30004 10653 10858 0.00961076654698445 GEEYAKMIERL 11 Unmodified _GEEYAKMIERL_ 0 0 0 REV__nc|ENSG00000276850|P13928-2|ANXA8 REV__nc|ENSG00000276850|P13928-2|ANXA8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 446.895589 1337.66494 4.3774 0.0019562 -0.91239 -0.00040774 3.465 0.0015485 446.8952589153165 98.67 0.24087 98.642 98.506 98.746 -0.028282 -0.0016006 -0.00093683 NaN 9.7643 23 8 3 NaN NaN NaN NaN 0 NaN NaN 0 7708800 + 15624 30004 10653 10858 0.00961076654698445 GEEYLDALAM 10 Unmodified _GEEYLDALAM_ 0 0 0 REV__nc|ENSG00000136689|P18510-3|IL1RN REV__nc|ENSG00000136689|P18510-3|IL1RN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2515258789062 2 556.25244 1110.49033 NaN NaN NaN NaN NaN NaN NaN 93.059 1 93.059 92.559 93.559 0 0 0 0 0.97302 1 51453 51453 3.5965 1.019 1 + 15625 29649 10654 10859 18758 18758 -0.0604992349051372 GEFCDIAI 8 Unmodified _GEFCDIAI_ 0 0 0 ENSG00000198081|ENST00000651870|ZBTB14 ENSG00000198081|ENST00000651870|ZBTB14 ENSG00000198081|ENST00000651870|ZBTB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.402587890625 1 867.391681 866.384405 0.31603 0.00027412 -0.61784 -0.00053591 -0.30182 -0.00026179 867.3913918612552 59.431 0.33611 59.431 59.241 59.577 0 37 14 4 0 0 0 0.80992 1 33131 33131 0.69038 0 1 7728600 15626 10047 10655 10860 18759 18759 -0.05413214545330902 GEFEFLRSS 9 Unmodified _GEFEFLRSS_ 0 0 0 ENST00000566802.5_1_16:74394762-74401977:-|nuORF;ENST00000561920.5_1_16:70148313-70154387:+|nuORF ENST00000566802.5_1_16:74394762-74401977:-|nuORF ENST00000566802.5_1_16:74394762-74401977:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2579956054688 2 536.258914 1070.50327 0.1545 8.2854E-05 -0.89237 -0.00047854 -0.73787 -0.00039569 536.2586677354452 45.5 0.28467 45.5 45.379 45.664 0 54 15 5 0 0 0 0.21643 1 24879 24879 21.537 6.2885 1 61963000 15627 15336 10656 10861 18760 18760 -0.02915724316108026 GEFQSLARLPR 11 Unmodified _GEFQSLARLPR_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.3523559570312 2 637.354211 1272.69387 NaN NaN NaN NaN NaN NaN NaN 70.103 1 69.623 69.123 70.123 -0.47903 0 0 0 0.75116 1 38332 38332 14.405 2.1647 1 + 15628 22306 10657 10862 18761 18761 0.06842982065973047 GEGEAAMY 8 Unmodified _GEGEAAMY_ 0 0 0 REV__nc|ENSG00000151726|P33121-2|ACSL1 REV__nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.3240356445312 1 827.323996 826.316719 -0.38962 -0.00032234 0.25985 0.00021498 -0.12977 -0.00010736 827.324398993024 103.73 0.07045 103.68 103.64 103.71 -0.048737 4 2 2 0 0 0 0.80975 1 57617 57617 0.79363 0 1 2976900 + 15629 21087 10658 10863 18762 18762 -0.10338664476114445 GEGEAAMY 8 Unmodified _GEGEAAMY_ 0 0 0 REV__nc|ENSG00000151726|P33121-2|ACSL1 REV__nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 827.323996 826.316719 -0.38962 -0.00032234 0.25985 0.00021498 -0.12977 -0.00010736 827.324398993024 103.73 0.07045 103.68 103.64 103.71 -0.048737 0 0 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2976900 + 15630 21087 10658 10863 -0.10338664476114445 GEGHLSSDSSS 11 Unmodified _GEGHLSSDSSS_ 0 0 0 nc|ENSG00000168334|Q702N8-2|XIRP1;ENSG00000168334|ENST00000340369|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7191162109375 2 531.72035 1061.42615 0.66697 0.00035464 -0.97734 -0.00051967 -0.31037 -0.00016503 531.7198231068622 81.975 0.41734 75.799 75.584 76.001 -6.1757 64 23 4 0 0 0 0.65108 1 53722 53722 8.7454 0.15213 1 29184000 15631 7749 10659 10864 18763 18763 -0.1021098732308019 GEGKMSMSGFK 11 Unmodified _GEGKMSMSGFK_ 0 0 0 ENST00000570221.5_1_15:30865009-30875097:+|nuORF;ENST00000397827.7_1_15:30672592-30685664:-|nuORF ENST00000570221.5_1_15:30865009-30875097:+|nuORF ENST00000570221.5_1_15:30865009-30875097:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2683715820312 2 579.767734 1157.52091 0.2522 0.00014622 -0.46281 -0.00026832 -0.21061 -0.00012211 580.2693857864116 88.774 0.26432 88.774 88.621 88.885 0 34 14 3 0 0 0 0.71341 1 49092 49092 2.9952 0.10602 1 1027700 15632 12833 10660 10865 18764 18764 -0.051544683770998745 GEGPYVDQTF 10 Unmodified _GEGPYVDQTF_ 0 0 0 ENST00000590587.1_3_17:58151366-58151510:-|nuORF ENST00000590587.1_3_17:58151366-58151510:-|nuORF ENST00000590587.1_3_17:58151366-58151510:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7454223632812 2 556.748379 1111.4822 NaN NaN NaN NaN NaN NaN NaN 43.298 1 43.298 42.798 43.798 0 0 0 0 0.64375 1 23508 23508 19.257 3.4098 1 15633 15688 10661 10866 18765 18765 -0.06907734415631239 GEGTWGSLFEI 11 Unmodified _GEGTWGSLFEI_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;ENST00000517309.5_1_8:97345868-97346075:+|nuORF nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2855834960938 2 598.285128 1194.5557 0.53655 0.00032101 0.034132 2.0421E-05 0.57068 0.00034143 598.2851088161332 86.298 0.44992 85.794 85.57 86.02 -0.50318 56 18 4 0 0 0 0.39949 2 47249 47151;47249 21.537 9.2963 1 7530600 15634 16294 10662 10867 18766;18767 18767 -0.03379185973130916 GEGTWGSLFEI 11 Unmodified _GEGTWGSLFEI_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;ENST00000517309.5_1_8:97345868-97346075:+|nuORF nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2849731445312 2 598.285128 1194.5557 0.51 0.00030512 2.0932 0.0012524 2.6032 0.0015575 598.2862984208239 99.452 0.091263 93.277 93.214 93.306 -6.1757 13 5 3 0 0 0 0.50515 1 66242 66242 16.149 0.30192 1 58936000 15635 16294 10662 10867 18768 18768 -0.03379185973130916 GEGTWGSLFEI 11 Unmodified _GEGTWGSLFEI_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;ENST00000517309.5_1_8:97345868-97346075:+|nuORF nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 598.285128 1194.5557 0.0061858 3.7009E-06 1.1039 0.00066046 1.1101 0.00066416 598.2859275562101 85.821 0.25671 85.821 85.677 85.934 0 0.013045 0.00096467 NaN 21.537 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 972460 15636 16294 10662 10867 -0.03379185973130916 GEGTWGSLFEI 11 Unmodified _GEGTWGSLFEI_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;ENST00000517309.5_1_8:97345868-97346075:+|nuORF nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.285128 1194.5557 0.53655 0.00032101 0.034132 2.0421E-05 0.57068 0.00034143 598.2851088161332 86.298 0.44992 85.794 85.57 86.02 -0.50318 -0.013045 -0.00031541 NaN 21.537 56 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7530600 15637 16294 10662 10867 -0.03379185973130916 GEHCEEHVAF 10 Unmodified _GEHCEEHVAF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000591367.5_1_18:21109371-21111665:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2372436523438 2 579.237655 1156.46076 -0.41047 -0.00023776 -0.5075 -0.00029397 -0.91798 -0.00053173 579.2375300336229 28.731 0.3817 28.731 28.438 28.82 0 34 19 3 0 0 0 0.52888 1 14727 14727 14.838 0 1 3160800 15638 5335 10663 10868 18769 18769 -0.1112144271598936 GEHEMEEDEE 10 Unmodified _GEHEMEEDEE_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MSMS AL20221201_MKP_PDAC_01 4 411.8116149902344 3 411.811919 1232.41393 NaN NaN NaN NaN NaN NaN NaN 14.486 1 11.983 11.483 12.483 -2.5029 0 0 0 1.0047 1 7360 7360 0.15932 0 1 15639 2967 10664 10869 18770 18770 -0.19298391848451502 GEHILALKNL 10 Unmodified _GEHILALKNL_ 0 0 0 ENST00000492302.1_1_1:20975445-20977181:+|nuORF;nc|ENSG00000158828|Q9BXM7-2|PINK1;ENST00000400490.2_1_1:20972014-20977181:+|nuORF;ENSG00000158828|ENST00000321556|PINK1 ENST00000492302.1_1_1:20975445-20977181:+|nuORF ENST00000492302.1_1_1:20975445-20977181:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2507934570312 2 554.329673 1106.64479 NaN NaN NaN NaN NaN NaN NaN 64.575 1 64.575 64.075 65.075 0 0 0 0 0.92825 1 36014 36014 6.7232 0.99131 1 15640 6612 10665 10870 18771 18771 0.09573693777042536 GEIIYSFG 8 Unmodified _GEIIYSFG_ 0 0 0 nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2221374511719 2 443.221268 884.427984 0.2092 9.2722E-05 1.6682 0.00073938 1.8774 0.0008321 443.222112151501 62.095 0.32493 62.095 61.842 62.167 0 17 13 2 0 0 0 0.75262 1 34601 34601 12.532 0 1 752320 15641 10670 10666 10871 18772 18772 -0.018852817765150576 GEKAGGFA 8 Unmodified _GEKAGGFA_ 0 0 0 ENSG00000168542|ENST00000304636|COL3A1;nc|ENSG00000168542|P02461-2|COL3A1 ENSG00000168542|ENST00000304636|COL3A1 ENSG00000168542|ENST00000304636|COL3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.6848754882812 2 368.684853 735.355153 -0.50448 -0.00018599 0.76361 0.00028153 0.25913 9.5537E-05 368.6850560613418 41.353 0.26622 41.353 41.196 41.462 0 18 12 2 0 0 0 0.6895 1 22299 22299 18.135 0 1 4231400 15642 7778 10667 10872 18773 18773 -0.02310990779290023 GEKCRICF 8 Unmodified _GEKCRICF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|312|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|312|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2292175292969 2 478.228048 954.441542 NaN NaN NaN NaN NaN NaN NaN 62.147 1 62.147 61.647 62.647 0 0 0 0 0.95607 1 34656 34656 9.3474 0 1 + 15643 16784 10668 10873 18774 18774 -0.03750070540593242 GEKCRICF 8 Unmodified _GEKCRICF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|312|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|312|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.22802734375 2 478.228048 954.441542 NaN NaN NaN NaN NaN NaN NaN 62.333 1 62.333 61.833 62.833 0 0 0 0 0.95607 1 34765 34765 9.3474 0 1 + 15644 16784 10668 10873 18775 18775 -0.03750070540593242 GEKPNLSYI 9 Unmodified _GEKPNLSYI_ 0 0 0 ENSG00000125730|ENST00000245907|C3;ENST00000599668.1_1_19:6677895-6679444:-|nuORF;ENST00000599899.5_1_19:6677895-6682275:-|nuORF ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7351379394531 2 510.771657 1019.52876 0.12549 6.4096E-05 -0.83997 -0.00042903 -0.71448 -0.00036494 510.77115849630775 31.094 0.22035 31.094 30.974 31.194 0 22 10 3 0 0 0 0.16418 1 16146 16146 25.399 6.1423 1 4018600 15645 3873 10669 10874 18776 18776 0.01977750206322071 GELDEEEEEL 10 Unmodified _GELDEEEEEL_ 0 0 0 REV__ENSG00000187994|ENST00000591812|RINL REV__ENSG00000187994|ENST00000591812|RINL MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8340454101562 3 397.834829 1190.48266 0.3771 0.00015002 -1.9366 -0.00077044 -1.5595 -0.00062041 397.8337045196047 22.858 0.29707 20.079 19.92 20.217 -2.7784 32 21 3 0 0 0 0.70951 1 12269 12269 0.77653 0 1 6985400 + 15646 23679 10670 10875 18777 18777 -0.10496404277068905 GELGKHGL 8 Unmodified _GELGKHGL_ 0 0 0 REV__PLD2|p.R202H|1|0.08|ENSG00000129219|chr17:4809542-4809542|G/A|missense_variant REV__PLD2|p.R202H|1|0.08|ENSG00000129219|chr17:4809542-4809542|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.7271728515625 2 405.727052 809.439552 NaN NaN NaN NaN NaN NaN NaN 20.335 1 20.335 19.835 20.835 0 0 0 0 0.9706 1 10226 10226 6.3541 1.1234 1 + 15647 30075 10671 10876 18778 18778 0.02720960037470377 GELHPSTP 8 Unmodified _GELHPSTP_ 0 0 0 REV__nc|ENSG00000123358|P22736-3|NR4A1 REV__nc|ENSG00000123358|P22736-3|NR4A1 MSMS AL20221201_MKP_PDAC_01 4 419.2066650390625 2 419.208692 836.402832 NaN NaN NaN NaN NaN NaN NaN 84.165 1 77.989 77.489 78.489 -6.1757 0 0 0 0.95607 1 55359 55359 9.3474 0 1 + 15648 19383 10672 10877 18779 18779 -0.021913365790965145 GELLHLCAPL 10 Unmodified _GELLHLCAPL_ 0 0 0 nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1 nc|ENSG00000120868|O14727-5|APAF1 nc|ENSG00000120868|O14727-5|APAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2930297851562 2 533.291702 1064.56885 1.9109 0.0010191 -0.06133 -3.2707E-05 1.8496 0.00098637 533.2917946864142 62.817 0.31884 56.642 56.461 56.78 -6.1757 35 15 3 0 0 0 0.33553 1 40542 40542 25.399 3.8623 1 26221000 15649 3547 10673 10878 18780 18780 0.03914973605265004 GELLQLALR 9 Unmodified _GELLQLALR_ 0 0 0 ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1 ENST00000506360.5_1_4:8220037-8234255:+|nuORF ENST00000506360.5_1_4:8220037-8234255:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.1898193359375 2 506.811116 1011.60768 -0.12654 -6.4132E-05 -0.11912 -6.0374E-05 -0.24566 -0.00012451 506.81109057999794 51.856 0.22585 51.422 51.325 51.55 -0.43367 18 11 2 0 0 0 0.21564 1 27930 27930 3.9444 0 1 4008300 15650 3828 10674 10879 18781 18781 0.10234022231259132 GELNGDQVSL 10 Unmodified _GELNGDQVSL_ 0 0 0 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2535400390625 2 516.253828 1030.4931 0.45183 0.00023326 0.36529 0.00018858 0.81712 0.00042184 516.2537225795193 72.743 0.34096 72.743 72.564 72.905 0 35 16 3 0 0 0 0.38092 1 40489 40489 22.736 2.3217 1 3473200 15651 6549 10675 10880 18782 18782 -0.020923320413203328 GELPLATAF 9 Unmodified _GELPLATAF_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.750732421875 2 459.750193 917.485833 0.55462 0.00025498 -0.073436 -3.3762E-05 0.48118 0.00022122 459.7500747062104 81.8 0.37563 81.8 81.576 81.952 0 37 22 2 0 0 0 0.30562 1 45359 45359 16.942 0 1 1319600 15652 10540 10676 10881 18783 18783 0.023789801489101592 GELPLATAF 9 Unmodified _GELPLATAF_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MSMS AL20221201_MKP_PDAC_01 4 459.75 2 459.750193 917.485833 NaN NaN NaN NaN NaN NaN NaN 90.331 1 84.155 83.655 84.655 -6.1757 0 0 0 0.08978 1 59660 59660 46.021 0 1 15653 10540 10676 10881 18784 18784 0.023789801489101592 GELPLATAF 9 Unmodified _GELPLATAF_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 459.750193 917.485833 0.50063 0.00023016 0.74474 0.00034239 1.2454 0.00057256 459.7504752525001 82.346 0.33952 81.85 81.65 81.989 -0.4952 0.025302 0.00054178 NaN 16.942 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 681640 15654 10540 10676 10881 0.023789801489101592 GELQPRSISVE 11 Unmodified _GELQPRSISVE_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF;ENST00000380567.5_2_X:13753187-13758224:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.8228759765625 2 607.822409 1213.63027 0.5998 0.00036457 0.37156 0.00022584 0.97136 0.00059041 607.8226495228744 52.2 0.16266 51.766 51.709 51.871 -0.43367 12 7 2 0 0 0 0.5551 1 28203 28203 13.615 0 1 790290 15655 676 10677 10882 18785 18785 0.031995768382330425 GELSTLMPE 9 Unmodified _GELSTLMPE_ 0 0 0 ENST00000447814.1_2_2:95830834-95831038:-|nuORF ENST00000447814.1_2_2:95830834-95831038:-|nuORF ENST00000447814.1_2_2:95830834-95831038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7380676269531 2 488.736425 975.458298 NaN NaN NaN NaN NaN NaN NaN 62.372 1 62.372 61.872 62.872 0 0 0 0 0.6557 1 34786 34786 10.824 0 1 15656 13486 10678 10883 18786 18786 -0.030412911736448223 GELVIGEEVAF 11 Unmodified _GELVIGEEVAF_ 0 0 0 REV__ENST00000388966.4_1_12:8169981-8170332:-|nuORF REV__ENST00000388966.4_1_12:8169981-8170332:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.2052612304688 3 388.204528 1161.59175 NaN NaN NaN NaN NaN NaN NaN 17.418 1 14.831 14.331 15.331 -2.5866 0 0 0 0.77961 1 9105 9105 7.0371 1.1689 1 + 15657 26357 10679 10884 18787 18787 0.017422712037159727 GELWWQRG 8 Unmodified _GELWWQRG_ 0 0 0 REV__ENST00000532414.2_1_1:156046123-156046267:-|nuORF REV__ENST00000532414.2_1_1:156046123-156046267:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2537231445312 2 516.256508 1030.49846 0.61444 0.00031721 -3.5993 -0.0018582 -2.9848 -0.0015409 516.2546657700258 73.315 0.36639 72.839 72.63 72.996 -0.47588 29 16 2 0 0 0 0.61462 1 40115 40115 24.674 1.9376 1 2021400 + 15658 28462 10680 10885 18788 18788 -0.01556563668191302 GEMERDWYRN 10 Unmodified _GEMERDWYRN_ 0 0 0 ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2001953125 3 452.531421 1354.57243 NaN NaN NaN NaN NaN NaN NaN 20.409 1 20.409 19.909 20.909 0 0 0 0 0.99248 1 10267 10267 0.62683 0 1 15659 15262 10681 10886 18789 18789 -0.09067008358852036 GENEAYDVEM 10 Unmodified _GENEAYDVEM_ 0 0 0 REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF REV__ENST00000548758.1_1_14:36295674-36335014:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1813049316406 3 386.153616 1155.43902 NaN NaN NaN NaN NaN NaN NaN 16.892 1 16.892 16.392 17.392 0 0 0 0 0.99091 1 8279 8279 0.69767 0.33099 1 + 15660 18116 10682 10887 18790 18790 -0.1324829225520716 GENFGRDFE 9 Unmodified _GENFGRDFE_ 0 0 0 ENST00000528717.1_1_11:102332271-102332460:+|nuORF ENST00000528717.1_1_11:102332271-102332460:+|nuORF ENST00000528717.1_1_11:102332271-102332460:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7301025390625 2 535.73052 1069.44649 -0.099835 -5.3484E-05 1.1297 0.00060523 1.0299 0.00055175 535.730826269808 37.767 0.18013 37.495 37.4 37.58 -0.27133 10 8 2 0 0 0 0.49272 1 19878 19878 7.9102 0 1 1799300 15661 14862 10683 10888 18791 18791 -0.08545771872604746 GENFGRDFE 9 Unmodified _GENFGRDFE_ 0 0 0 ENST00000528717.1_1_11:102332271-102332460:+|nuORF ENST00000528717.1_1_11:102332271-102332460:+|nuORF ENST00000528717.1_1_11:102332271-102332460:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.73052 1069.44649 0.23103 0.00012377 -0.83438 -0.000447 -0.60335 -0.00032324 535.7301339986518 37.41 0.19397 37.41 37.316 37.51 0 -0.042446 -0.0010416 NaN 7.9102 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2606100 15662 14862 10683 10888 -0.08545771872604746 GENFSRISHLV 11 Unmodified _GENFSRISHLV_ 0 0 0 ENSG00000125945|ENST00000314011|ZNF436 ENSG00000125945|ENST00000314011|ZNF436 ENSG00000125945|ENST00000314011|ZNF436 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8308715820312 2 629.830569 1257.64658 1.4599 0.00091947 -0.30919 -0.00019474 1.1507 0.00072474 629.8302172099138 50.276 0.20367 50.227 50.127 50.331 -0.048824 12 9 2 0 0 0 0.68427 1 27203 27203 5.7319 0 1 1203800 15663 3911 10684 10889 18792 18792 0.028067027950100965 GENHYFSMFL 10 Unmodified _GENHYFSMFL_ 0 0 0 nc|ENSG00000133138|Q0IIM8-2|TBC1D8B;nc|ENSG00000133138|Q0IIM8-3|TBC1D8B;ENSG00000133138|ENST00000357242|TBC1D8B nc|ENSG00000133138|Q0IIM8-2|TBC1D8B nc|ENSG00000133138|Q0IIM8-2|TBC1D8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5205078125 3 415.518341 1243.53319 0.26203 0.00010888 3.1238 0.001298 3.3859 0.0014069 415.5192922197173 49.98 0.26018 49.98 49.793 50.053 0 22 11 3 0 0 0 0.66569 1 27517 27517 3.5871 0 1 4166400 15664 4496 10685 10890 18793 18793 -0.07883108642386105 GENISAVF 8 Unmodified _GENISAVF_ 0 0 0 REV__ENSG00000125207|ENST00000245255|PIWIL1 REV__ENSG00000125207|ENST00000245255|PIWIL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7111511230469 2 418.711068 835.407583 NaN NaN NaN NaN NaN NaN NaN 74.87 1 74.87 74.37 75.37 0 0 0 0 0.97348 1 41655 41655 5.7604 0 1 + 15665 19480 10686 10891 18794 18794 -0.01670452436337655 GENPTLFVHFY 11 Unmodified _GENPTLFVHFY_ 0 0 0 ENSG00000188582|ENST00000340634|PAQR9 ENSG00000188582|ENST00000340634|PAQR9 ENSG00000188582|ENST00000340634|PAQR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3220825195312 2 662.322045 1322.62954 3.5326 0.0023397 -2.2532 -0.0014923 1.2794 0.00084738 662.3208221965575 97.653 0.40788 97.635 97.492 97.9 -0.018188 35 14 3 0 0 0 0.42108 1 54276 54276 20.415 2.2796 1 12531000 15666 9672 10687 10892 18795 18795 -0.018872178108040316 GENPTLFVHFY 11 Unmodified _GENPTLFVHFY_ 0 0 0 ENSG00000188582|ENST00000340634|PAQR9 ENSG00000188582|ENST00000340634|PAQR9 ENSG00000188582|ENST00000340634|PAQR9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.3226318359375 2 662.322045 1322.62954 0.77338 0.00051222 0.11714 7.7583E-05 0.89051 0.00058981 662.3221313122323 100.42 0.20407 94.246 94.141 94.345 -6.1757 42 12 5 0 0 0 0.24216 1 67108 67108 29.841 2.2118 1 220680000 15667 9672 10687 10892 18796 18796 -0.018872178108040316 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1800231933594 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 3.0374 1 3.0374 2.5374 3.5374 0 0 0 0 0.94337 1 1473 1473 0.094841 0 1 + 15668 21413 10688 10893 18797 18797 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1792297363281 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 7.9126 1 7.9126 7.4126 8.4126 0 0 0 0 0.94337 1 3782 3782 0.094841 0 1 + 15669 21413 10688 10893 18798 18798 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1801147460938 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 13.433 1 13.433 12.933 13.933 0 0 0 0 0.94337 1 6357 6357 0.094841 0 1 + 15670 21413 10688 10893 18799 18799 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1797180175781 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 0.98956 1 0.91627 0.41627 1.4163 -0.073289 0 0 0 0.94337 1 496 496 0.094841 0 1 + 15671 21413 10688 10893 18800 18800 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1808166503906 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 3.7352 1 3.6632 3.1632 4.1632 -0.072029 0 0 0 0.94337 1 1842 1842 0.094841 0 1 + 15672 21413 10688 10893 18801 18801 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1799011230469 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 11.646 1 11.566 11.066 12.066 -0.07938 0 0 0 0.94337 1 5664 5664 0.094841 0 1 + 15673 21413 10688 10893 18802 18802 -0.07059716367666624 GEPCSDFITHV 11 Unmodified _GEPCSDFITHV_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1805419921875 3 402.181618 1203.52302 NaN NaN NaN NaN NaN NaN NaN 1.1375 1 1.1169 0.61691 1.6169 -0.020623 0 0 0 0.94337 1 586 586 0.094841 0 1 + 15674 21413 10688 10893 18803 18803 -0.07059716367666624 GEPKIQHPL 9 Unmodified _GEPKIQHPL_ 0 0 0 nc|ENSG00000008323|Q3KR16-3|PLEKHG6 nc|ENSG00000008323|Q3KR16-3|PLEKHG6 nc|ENSG00000008323|Q3KR16-3|PLEKHG6 MSMS AL20221201_MKP_PDAC_01 4 509.7877807617188 2 509.787641 1017.56073 NaN NaN NaN NaN NaN NaN NaN 80.608 1 74.432 73.932 74.932 -6.1757 0 0 0 0.6557 1 52891 52891 10.824 0 1 15675 16014 10689 10894 18804 18804 0.052651626801548446 GEPLDYLFLKC 11 Unmodified _GEPLDYLFLKC_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MSMS AL20221201_MKP_PDAC_01 4 433.2224731445312 3 433.221413 1296.64241 NaN NaN NaN NaN NaN NaN NaN 90.688 1 84.512 84.012 85.012 -6.1757 0 0 0 0.93933 1 59919 59919 1.2148 0 1 + 15676 24052 10690 10895 18805 18805 0.005954772570703426 GEPLGEVYL 9 Unmodified _GEPLGEVYL_ 0 0 0 REV__nc|ENSG00000263001|P78347-2|GTF2I REV__nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.4984130859375 1 976.498589 975.491313 0.24228 0.00023659 0.027235 2.6595E-05 0.26951 0.00026318 976.4978831183151 68.788 0.23626 68.788 68.698 68.934 0 15 9 2 0 0 0 0.07916 1 38330 38330 37.974 3.8716 1 584470 + 15677 24595 10691 10896 18806 18806 0.002586589407201245 GEPLSANYF 9 Unmodified _GEPLSANYF_ 0 0 0 REV__ENSG00000166341|ENST00000299441|DCHS1 REV__ENSG00000166341|ENST00000299441|DCHS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2347717285156 2 499.234907 996.455261 NaN NaN NaN NaN NaN NaN NaN 70.315 1 70.315 69.815 70.815 0 0 0 0 0.7453 1 39179 39179 7.9102 0 1 + 15678 22106 10692 10897 18807 18807 -0.043107982361448194 GEPMIALTTIF 11 Unmodified _GEPMIALTTIF_ 0 0 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000572607.1_1_17:454958-465900:-|nuORF nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MSMS AL20221201_MKP_PDAC_01 4 398.2132568359375 3 398.214259 1191.62095 NaN NaN NaN NaN NaN NaN NaN 15.007 1 12.479 11.979 12.979 -2.5273 0 0 0 0.93893 1 7665 7665 1.3296 0.21989 1 15679 5308 10693 10898 18808 18808 0.03280092228328613 GEPNDTQKF 9 Unmodified _GEPNDTQKF_ 0 0 0 REV__ENSG00000124003|ENST00000446656|MOGAT1 REV__ENSG00000124003|ENST00000446656|MOGAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.24072265625 2 518.240721 1034.46689 1.4199 0.00073584 -0.55128 -0.0002857 0.8686 0.00045015 518.2401383097908 97.254 0.48822 91.078 90.807 91.295 -6.1757 40 27 2 0 0 0 0.55144 1 64572 64572 4.3292 0 1 15827000 + 15680 19410 10694 10899 18809 18809 -0.04896601212817586 GEPRLVQCYDH 11 Unmodified _GEPRLVQCYDH_ 0 0 0 REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.8056640625 2 658.806236 1315.59792 -0.025857 -1.7035E-05 -0.63814 -0.00042041 -0.664 -0.00043745 658.8058667702884 90.196 0.21259 90.196 90.02 90.233 0 26 16 2 0 0 0 0.69708 1 49860 49860 4.5289 1.2476 1 630460 + 15681 21292 10695 10900 18810 18810 -0.047255338364038835 GEPTVDGMRN 10 Unmodified _GEPTVDGMRN_ 0 0 0 REV__ENSG00000087008|ENST00000356406|ACOX3 REV__ENSG00000087008|ENST00000356406|ACOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2476196289062 2 538.24548 1074.47641 NaN NaN NaN NaN NaN NaN NaN 71.915 1 71.954 71.454 72.454 0.039024 0 0 0 0.8671 1 39594 39594 9.3831 1.7742 1 + 15682 17774 10696 10901 18811 18811 -0.05785156198930963 GEPVHGEPLKL 11 Unmodified _GEPVHGEPLKL_ 0 0 0 REV__ENSG00000185567|ENST00000333244|AHNAK2 REV__ENSG00000185567|ENST00000333244|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5526123046875 3 392.552151 1174.63462 0.21401 8.4011E-05 0.83406 0.00032741 1.0481 0.00041142 392.5525027284118 41.122 0.22782 40.819 40.718 40.946 -0.30304 16 10 2 0 0 0 0.65096 1 21778 21778 8.7518 8.7518 1 2493400 + 15683 23510 10697 10902 18812 18812 0.05429086051822196 GEPVQNGAPE 10 Unmodified _GEPVQNGAPE_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000589223.5_1_19:2111584-2111854:-|nuORF;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2339782714844 2 499.232896 996.451239 NaN NaN NaN NaN NaN NaN NaN 70.496 1 70.496 69.996 70.996 0 0 0 0 0.94014 1 39278 39278 6.2058 0.47393 1 15684 889;16041 10698 10903 18813 18813 -0.047128877298519 GEPYREEEWW 10 Unmodified _GEPYREEEWW_ 0 0 0 REV__ENSG00000198900|ENST00000361337|TOP1 REV__ENSG00000198900|ENST00000361337|TOP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.8866271972656 3 460.866687 1379.57823 0.81334 0.00037484 -1.8796 -0.00086624 -1.0662 -0.0004914 460.86576147237855 39.105 0.1451 39.105 38.97 39.115 0 11 6 2 0 0 0 0.23946 1 20884 20884 3.5871 1.8448 1 875890 + 15685 24096 10699 10904 18814 18814 -0.09637586575513524 GEQATFDWVFK 11 Unmodified _GEQATFDWVFK_ 0 0 0 ENSG00000255974|ENST00000301141|CYP2A6;ENSG00000198077|ENST00000301146|CYP2A7 ENSG00000255974|ENST00000301141|CYP2A6 ENSG00000255974|ENST00000301141|CYP2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.3206787109375 2 664.319502 1326.62445 0.29216 0.00019409 -0.029334 -1.9487E-05 0.26282 0.0001746 664.3198703675283 58.729 0.40359 58.238 58.07 58.474 -0.49079 50 19 3 0 0 0 0.63534 1 31893 31893 9.544 0.79857 1 12552000 15686 10797 10700 10905 18815 18815 -0.02579521673465024 GEQLQSETF 9 Unmodified _GEQLQSETF_ 0 0 0 REV__ENSG00000149591|ENST00000392951|TAGLN REV__ENSG00000149591|ENST00000392951|TAGLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7416381835938 2 519.740554 1037.46655 1.0794 0.00056099 0.22381 0.00011632 1.3032 0.00067731 519.7409814186233 87.303 0.34395 81.127 80.982 81.326 -6.1757 32 18 2 0 0 0 0.07087 1 57520 57520 39.95 2.8751 1 12413000 + 15687 21008 10701 10906 18816 18816 -0.050680209326628756 GEQRHYNF 8 Unmodified _GEQRHYNF_ 0 0 0 REV__ENSG00000135678|ENST00000551568|CPM REV__ENSG00000135678|ENST00000551568|CPM MSMS AL20221201_MKP_PDAC_01 4 525.7429809570312 2 525.741222 1049.46789 NaN NaN NaN NaN NaN NaN NaN 73.733 1 67.557 67.057 68.057 -6.1757 0 0 0 0.93066 1 48209 48209 14.582 4.3983 1 + 15688 20088 10702 10907 18817 18817 -0.054863420532456075 GERCNDHHNYG 11 Unmodified _GERCNDHHNYG_ 0 0 0 REV__ENST00000465385.5_1_22:24125796-24126042:+|nuORF REV__ENST00000465385.5_1_22:24125796-24126042:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2574462890625 2 651.257442 1300.50033 NaN NaN NaN NaN NaN NaN NaN 93.856 1 93.856 93.356 94.356 0 0 0 0 0.9435 1 51886 51886 0 0 1 + 15689 27390 10703 10908 18818 18818 -0.13789922712544467 GERHPGELG 9 Unmodified _GERHPGELG_ 0 0 0 REV__ENST00000394613.3_1_11:63342419-63381578:-|nuORF REV__ENST00000394613.3_1_11:63342419-63381578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2374877929688 2 476.235773 950.456993 2.2823 0.0010869 3.2505 0.001548 5.5327 0.0026349 476.23689783137183 62.718 0.30135 56.542 56.398 56.7 -6.1757 21 14 2 0 0 0 0.06294 1 40545 40545 41.84 3.6641 1 8522600 + 15690 26451 10704 10909 18819 18819 -0.0202174442750902 GERIALQMY 9 Unmodified _GERIALQMY_ 0 0 0 REV__ENSG00000137393|ENST00000259939|RNF144B REV__ENSG00000137393|ENST00000259939|RNF144B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1888427734375 3 360.855065 1079.54336 -0.48013 -0.00017326 0.016717 6.0324E-06 -0.46342 -0.00016723 360.8553565857381 19.174 0.18517 19.174 19.032 19.217 0 17 11 2 0 0 0 0.58466 1 9561 9561 1.1933 0 1 795110 + 15691 20236 10705 10910 18820 18820 0.006774990828262162 GERIALQMY 9 Unmodified _GERIALQMY_ 0 0 0 REV__ENSG00000137393|ENST00000259939|RNF144B REV__ENSG00000137393|ENST00000259939|RNF144B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.855065 1079.54336 -0.48013 -0.00017326 0.016717 6.0324E-06 -0.46342 -0.00016723 360.8553565857381 19.174 0.18517 19.174 19.032 19.217 0 0 0 NaN 1.1933 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 795110 + 15692 20236 10705 10910 0.006774990828262162 GERNFFCL 8 Unmodified _GERNFFCL_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2535400390625 2 493.231645 984.448736 NaN NaN NaN NaN NaN NaN NaN 17.789 1 17.789 17.289 18.289 0 0 0 0 0.97444 1 8794 8794 0.79363 0 1 15693 3642 10706 10911 18821 18821 -0.04411014668517055 GERPCEEWF 9 Unmodified _GERPCEEWF_ 0 0 0 REV__ENSG00000043355|ENST00000376335|ZIC2;REV__ENSG00000152977|ENST00000282928|ZIC1 REV__ENSG00000043355|ENST00000376335|ZIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7428588867188 2 576.742573 1151.47059 -0.82549 -0.00047609 0.31105 0.00017939 -0.51444 -0.0002967 576.7426849140933 56.319 0.27078 55.834 55.689 55.96 -0.48554 24 13 2 0 0 0 0.32871 1 30554 30554 15.847 2.8047 1 5553900 + 15694 17212;21144 10707 10912 18822 18822 -0.09908254710603615 GERRRRRRREA 11 Unmodified _GERRRRRRREA_ 0 0 0 REV__ENST00000590333.5_3_19:55795372-55798434:+|nuORF REV__ENST00000590333.5_3_19:55795372-55798434:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 749.6399536132812 2 749.438329 1496.86211 NaN NaN NaN NaN NaN NaN NaN 93.498 1 93.521 93.021 94.021 0.022987 0 0 0 0.94184 1 51981 51981 1.1933 0.84271 1 + 15695 29148 10708 10913 18823 18823 0.1335490182302692 GERRSWPSHEL 11 Unmodified _GERRSWPSHEL_ 0 0 0 REV__ENSG00000004838|ENST00000231749|ZMYND10 REV__ENSG00000004838|ENST00000231749|ZMYND10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3365478515625 2 677.33655 1352.65855 -0.018925 -1.2819E-05 -0.96393 -0.0006529 -0.98285 -0.00066572 677.3360365903156 98.756 0.22955 98.756 98.641 98.871 0 16 7 3 0 0 0 0.65846 1 54541 54541 8.1555 1.9497 1 1847000 + 15696 16952 10709 10914 18824 18824 -0.0036768046181805403 GERRSWPSHEL 11 Unmodified _GERRSWPSHEL_ 0 0 0 REV__ENSG00000004838|ENST00000231749|ZMYND10 REV__ENSG00000004838|ENST00000231749|ZMYND10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 677.33655 1352.65855 0.32336 0.00021902 -3.9914 -0.0027035 -3.668 -0.0024845 677.333010745429 98.905 0.2128 98.712 98.599 98.812 -0.19321 -0.021976 -0.0038939 NaN 8.1555 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1102100 + 15697 16952 10709 10914 -0.0036768046181805403 GERSTRWY 8 Unmodified _GERSTRWY_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2589111328125 2 527.756872 1053.49919 0.41939 0.00022134 -0.99586 -0.00052557 -0.57647 -0.00030423 527.7565484967118 90.728 0.2861 90.728 90.573 90.859 0 20 11 2 0 0 0 0.80676 1 50172 50172 2.5775 0 1 283830 15698 2986 10710 10915 18825 18825 -0.025417690191488873 GESECRYYKER 11 Unmodified _GESECRYYKER_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.8841857910156 3 473.882231 1418.62486 NaN NaN NaN NaN NaN NaN NaN 51.48 1 51.066 50.566 51.566 -0.41351 0 0 0 0.88164 1 27758 27758 4.1166 1.6818 1 15699 7104 10711 10916 18826 18826 -0.06770470015908359 GESLSGTRE 9 Unmodified _GESLSGTRE_ 0 0 0 ENST00000490449.1_2_22:30696623-30722870:-|nuORF;ENSG00000099992|ENST00000215790|TBC1D10A;nc|ENSG00000099992|Q9BXI6-2|TBC1D10A ENST00000490449.1_2_22:30696623-30722870:-|nuORF ENST00000490449.1_2_22:30696623-30722870:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2256469726562 2 468.225071 934.435589 1.1081 0.00051882 0.45666 0.00021382 1.5647 0.00073265 468.2252022267599 54.677 0.30349 54.677 54.462 54.765 0 29 12 3 0 0 0 0.41742 1 30409 30409 11.64 0 1 3463600 15700 1732 10712 10917 18827 18827 -0.034251742468882185 GESNKAWL 8 Unmodified _GESNKAWL_ 0 0 0 REV__nc|ENSG00000102226|P51784|USP11 REV__nc|ENSG00000102226|P51784|USP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7292175292969 2 452.729792 903.445031 NaN NaN NaN NaN NaN NaN NaN 57.579 1 57.579 57.079 58.079 0 0 0 0 0.97348 1 32044 32044 5.7604 0 1 + 15701 18229 10713 10918 18828 18828 -0.01055361170733704 GESPPSLSPPS 11 Unmodified _GESPPSLSPPS_ 0 0 0 REV__ENST00000404056.1_1_22:24179058-24179352:-|nuORF REV__ENST00000404056.1_1_22:24179058-24179352:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7560424804688 2 527.756204 1053.49785 0.34665 0.00018295 0.15845 8.3622E-05 0.5051 0.00026657 527.7561813470159 91.335 0.32037 90.841 90.663 90.984 -0.49457 33 14 3 0 0 0 0.6889 1 49969 49969 5.2969 0.066215 1 1256500 + 15702 25237 10714 10919 18829 18829 -0.026754478985594687 GETAATHLR 9 Unmodified _GETAATHLR_ 0 0 0 REV__ENSG00000133640|ENST00000393217|LRRIQ1 REV__ENSG00000133640|ENST00000393217|LRRIQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2518005371094 2 478.251423 954.488293 0.19288 9.2244E-05 -0.75784 -0.00036244 -0.56496 -0.00027019 478.25134681843866 38.685 0.46228 38.697 38.559 39.021 0.011456 33 22 2 0 0 0 0.23158 1 20582 20582 20.454 2.3186 1 2350000 + 15703 19928 10715 10920 18830 18830 0.009228286065649627 GETAYLKLHF 10 Unmodified _GETAYLKLHF_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 589.7726440429688 2 589.813856 1177.61316 0.48384 0.00028537 2.053 0.0012109 2.5369 0.0014963 589.8152281178204 44.271 0.31951 39.419 39.343 39.662 -4.852 38 23 2 0 0 0 0.22811 1 27076 27076 14.838 9.1064 1 9965000 15704 749 10716 10921 18831 18831 0.03145701023049696 GETFFSKSQI 10 Unmodified _GETFFSKSQI_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2872314453125 2 572.287671 1142.56079 0.66619 0.00038126 -0.43519 -0.00024906 0.231 0.0001322 572.2873431809231 84.533 0.22659 84.034 83.887 84.114 -0.49961 18 10 2 0 0 0 0.60623 1 46244 46244 10.824 0 1 521150 15705 8543 10717 10922 18832 18832 -0.004788821105194074 GETLTASLL 9 Unmodified _GETLTASLL_ 0 0 0 REV__nc|ENSG00000125485|Q9H8H2-4|DDX31 REV__nc|ENSG00000125485|Q9H8H2-4|DDX31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7538146972656 2 452.752933 903.491313 1.1967 0.00054182 0.90911 0.0004116 2.1058 0.00095342 452.7533330250995 42.676 0.53904 37.991 37.721 38.26 -4.6846 87 35 3 0 0 0 0.10734 1 25775 25775 32.305 0 1 143930000 + 15706 19496 10718 10923 18833 18833 0.035706589407254796 GETLTGKK 8 Unmodified _GETLTGKK_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5 REV__ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2403564453125 2 417.239993 832.465432 1.3065 0.00054513 -0.41909 -0.00017486 0.88743 0.00037027 417.2400135544888 87.215 0.41277 81.04 80.825 81.237 -6.1757 32 22 2 0 0 0 0.78849 1 57605 57605 9.3474 3.1417 1 11596000 + 15707 24048 10719 10924 18834 18834 0.04249809489101608 GETQTPPKW 9 Unmodified _GETQTPPKW_ 0 0 0 REV__ENST00000462742.1_1_21:45755312-45758250:-|nuORF REV__ENST00000462742.1_1_21:45755312-45758250:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.2953491210938 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 44.669 1 39.817 39.317 40.317 -4.852 0 0 0 0.32177 1 27295 27295 24.021 0.87215 1 + 15708 27342 10720 10925 18835 18835 -0.011194204534831442 GEVTMWFFLHA 11 Unmodified _GEVTMWFFLHA_ 0 0 0 REV__ENSG00000071189|ENST00000428135|SNX13 REV__ENSG00000071189|ENST00000428135|SNX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.32275390625 2 669.320991 1336.62743 0.3045 0.00020381 1.1632 0.00077854 1.4677 0.00098234 669.3217979444712 54.039 0.2804 53.573 53.427 53.707 -0.46664 38 13 4 0 0 0 0.28407 1 29235 29235 27.629 7.2143 1 10444000 + 15709 17491 10721 10926 18836 18836 -0.02741969820272061 GEWPKEQSW 9 Unmodified _GEWPKEQSW_ 0 0 0 REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF REV__ENST00000357037.5_1_17:40555970-40556201:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.764404296875 2 573.764363 1145.51417 1.0291 0.00059048 0.10274 5.8947E-05 1.1319 0.00064943 573.7640736542994 50.531 0.65834 50.477 50.164 50.823 -0.053871 78 32 3 0 0 0 0.52067 1 27482 27482 6.2058 0 1 5693000 + 15710 25839 10722 10927 18837 18837 -0.05276321941801143 GEWQGTSFRFL 11 Unmodified _GEWQGTSFRFL_ 0 0 0 REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|195|3|anti-sense REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|195|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 664.3252563476562 2 664.325119 1326.63569 NaN NaN NaN NaN NaN NaN NaN 75.163 1 68.988 68.488 69.488 -6.1757 0 0 0 0.73356 1 49149 49149 15.248 4.449 1 + 15711 29370 10723 10928 18838 18838 -0.014566995792847592 GEWRAFCFCL 10 Unmodified _GEWRAFCFCL_ 0 0 0 ENST00000300682.14_2_17:77082467-77082989:+|nuORF ENST00000300682.14_2_17:77082467-77082989:+|nuORF ENST00000300682.14_2_17:77082467-77082989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1842651367188 3 411.184416 1230.53142 -0.040915 -1.6823E-05 -1.0296 -0.00042335 -1.0705 -0.00044017 411.18405662713667 37.726 0.20174 37.726 37.625 37.826 0 16 9 2 0 0 0 0.69064 1 20126 20126 1.9064 0 1 1891300 15712 11554 10724 10929 18839 18839 -0.07462440931999481 GEYEGHELY 9 Unmodified _GEYEGHELY_ 0 0 0 REV__ENSG00000105926|ENST00000222644|PALS2 REV__ENSG00000105926|ENST00000222644|PALS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.733154296875 2 548.732729 1095.4509 -0.22984 -0.00012612 1.2121 0.00066509 0.98221 0.00053897 548.7333231306047 25.885 0.53183 25.885 25.613 26.145 0 93 24 5 0 0 0 0.49272 1 13292 13292 7.9102 0 1 62667000 + 15713 18472 10725 10930 18840 18840 -0.09300307449711909 GEYEMYLSS 9 Unmodified _GEYEMYLSS_ 0 0 0 REV__nc|ENSG00000145016|Q92622-3|RUBCN REV__nc|ENSG00000145016|Q92622-3|RUBCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1524658203125 3 360.151435 1077.43248 0.28039 0.00010098 1.1712 0.00042181 1.4516 0.0005228 360.152756492443 56.973 0.32487 56.973 56.786 57.111 0 34 13 4 0 0 0 0.55775 1 31684 31684 2.2828 0 1 2715800 + 15714 20752 10726 10931 18841 18841 -0.10314185415927568 GEYPHHHNCH 10 Unmodified _GEYPHHHNCH_ 0 0 0 nc|ENSG00000168538|Q7Z392-4|TRAPPC11 nc|ENSG00000168538|Q7Z392-4|TRAPPC11 nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2479248046875 2 615.746513 1229.47847 0.30878 0.00019013 -1.9944 -0.0012281 -1.6856 -0.0010379 615.746003768049 65.431 0.42983 65.431 65.194 65.624 0 53 16 4 0 0 0 0.23896 1 36428 36428 3.5965 1.019 1 4927600 15715 16369 10727 10932 18842 18842 -0.12708682670472626 GFAGPRAF 8 Unmodified _GFAGPRAF_ 0 0 0 ENST00000338573.9_2_16:21312214-21312475:+|nuORF ENST00000338573.9_2_16:21312214-21312475:+|nuORF ENST00000338573.9_2_16:21312214-21312475:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7171630859375 2 411.716488 821.418422 0.76775 0.0003161 0.0062151 2.5589E-06 0.77397 0.00031866 411.7164409884099 33.038 0.47178 29.182 28.989 29.461 -3.8562 43 29 2 0 0 0 0.74163 1 18849 18849 13.508 2.3934 1 30354000 15716 11939 10728 10933 18843 18843 0.000569947286066963 GFAGPRAF 8 Unmodified _GFAGPRAF_ 0 0 0 ENST00000338573.9_2_16:21312214-21312475:+|nuORF ENST00000338573.9_2_16:21312214-21312475:+|nuORF ENST00000338573.9_2_16:21312214-21312475:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7172546386719 2 411.716488 821.418422 1.1946 0.00049185 -0.096492 -3.9727E-05 1.0981 0.00045213 411.7166025902336 33.428 0.54105 29.442 29.264 29.805 -3.9853 51 30 2 0 0 0 0.74163 2 19114 19114;19233 13.508 2.3934 1 28114000 15717 11939 10728 10933 18844;18845 18844 0.000569947286066963 GFCFDDDV 8 Unmodified _GFCFDDDV_ 0 0 0 REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.1701965332031 2 459.170918 916.327284 NaN NaN NaN NaN NaN NaN NaN 102.39 1 102.39 101.89 102.89 0 0 0 0 0.97444 1 56463 56463 0.69038 0 1 + 15718 22269 10729 10934 18846 18846 -0.13422681821703009 GFCSAAHP 8 Unmodified _GFCSAAHP_ 0 0 0 REV__nc|ENSG00000198561|O60716-32|CTNND1 REV__nc|ENSG00000198561|O60716-32|CTNND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1705017089844 2 395.171056 788.327559 NaN NaN NaN NaN NaN NaN NaN 97.048 1 96.802 96.302 97.302 -0.24661 0 0 0 0.97444 1 52997 52997 0.79363 0.10326 1 + 15719 16898 10730 10935 18847 18847 -0.07507217311183467 GFDAVTGEF 9 Unmodified _GFDAVTGEF_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1;ENST00000556425.2_1_15:21937379-21938108:-|nuORF;ENSG00000077264|ENST00000372007|PAK3;nc|ENSG00000077264|O75914|PAK3;nc|ENSG00000077264|O75914-4|PAK3;nc|ENSG00000077264|O75914-3|PAK3 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7138366699219 2 471.713808 941.413062 NaN NaN NaN NaN NaN NaN NaN 61.533 1 61.533 61.033 62.033 0 0 0 0 0.6032 1 34307 34307 12.532 2.3482 1 15720 8896 10731 10936 18848 18848 -0.05998773644500943 GFDDVESFK 9 Unmodified _GFDDVESFK_ 0 0 0 nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1;ENST00000484834.5_1_1:203182159-203191449:-|nuORF nc|ENSG00000133063|Q13231-2|CHIT1 nc|ENSG00000133063|Q13231-2|CHIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2365112304688 2 522.237647 1042.46074 0.52859 0.00027605 0.69225 0.00036152 1.2208 0.00063757 522.2373652388252 75.197 0.33457 75.197 75.035 75.369 0 36 19 3 0 0 0 0.41742 1 41846 41846 11.64 5.4345 1 1014300 15721 4484 10732 10937 18849 18849 -0.05879119444330172 GFDFDNYEDF 10 Unmodified _GFDFDNYEDF_ 0 0 0 REV__nc|ENSG00000096006|P54108|CRISP3 REV__nc|ENSG00000096006|P54108|CRISP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.4972839355469 3 423.496259 1267.46695 0.46166 0.00019551 0.69258 0.00029331 1.1542 0.00048882 423.8306233243982 87.906 0.36359 87.402 87.239 87.602 -0.50423 30 16 2 0 0 0 0.72196 1 48057 48057 0.15932 0 1 1193400 + 15722 17955 10733 10938 18850 18850 -0.15608646003465765 GFDGASWS 8 Unmodified _GFDGASWS_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.336669921875 1 826.336609 825.329333 0.28241 0.00023337 -0.7924 -0.00065479 -0.50998 -0.00042142 826.3361081310582 74.966 0.25676 74.489 74.348 74.605 -0.47714 16 10 2 0 0 0 0.74163 1 41017 41017 13.508 0 1 854000 + 15723 17512 10734 10939 18851 18851 -0.09031885021556718 GFDLQETLV 9 Unmodified _GFDLQETLV_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;ENST00000452026.1_1_7:64530831-64532573:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2640075683594 2 511.263665 1020.51278 0.40189 0.00020547 1.123 0.00057417 1.5249 0.00077964 511.2635314533492 75.192 0.36524 75.192 75.004 75.369 0 62 21 4 0 0 0 0.1773 2 41872 41776;41872 25.399 9.5521 1 6804400 15724 5791 10735 10940 18852;18853 18853 0.003340439694397901 GFDPWSTFHF 10 Unmodified _GFDPWSTFHF_ 0 0 0 REV__nc|ENSG00000132670|P18433-6|PTPRA REV__nc|ENSG00000132670|P18433-6|PTPRA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.7750244140625 2 620.774731 1239.53491 NaN NaN NaN NaN NaN NaN NaN 93.642 1 93.185 92.685 93.685 -0.4574 0 0 0 0.96627 1 51169 51169 4.3292 0.73274 1 + 15725 19871 10736 10941 18854 18854 -0.07527731562140616 GFDSDDDVLI 10 Unmodified _GFDSDDDVLI_ 0 0 0 REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11 REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.24609375 2 548.245669 1094.47678 NaN NaN NaN NaN NaN NaN NaN 71.381 1 71.381 70.881 71.881 0 0 0 0 0.96627 1 39761 39761 4.3292 1.44 1 + 15726 29814 10737 10942 18855 18855 -0.06667457998082682 GFDSDDDVLI 10 Unmodified _GFDSDDDVLI_ 0 0 0 REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11 REV__nc|ENSG00000178234|Q8NCW6-2|GALNT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2453002929688 2 548.245669 1094.47678 0.45369 0.00024873 2.0485 0.0011231 2.5022 0.0013718 548.2465279446964 71.602 0.77631 71.125 70.817 71.594 -0.47609 47 31 2 0 0 0 0.68719 1 39148 39148 4.3292 0 1 634520 + 15727 29814 10737 10942 18856 18856 -0.06667457998082682 GFELIGEVTI 10 Unmodified _GFELIGEVTI_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2958984375 2 539.294965 1076.57538 0.24632 0.00013284 0.94621 0.00051028 1.1925 0.00064312 539.2953129543948 82.302 0.45728 82.302 82.022 82.48 0 54 20 3 0 0 0 0.35903 1 45640 45640 24.021 0 1 1792000 15728 8469 10738 10943 18857 18857 0.04015190037625871 GFEYQQVAF 9 Unmodified _GFEYQQVAF_ 0 0 0 nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;nc|ENSG00000134759|Q6IA86-4|ELP2;nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7562255859375 2 544.756007 1087.49746 0.28654 0.0001561 2.2458 0.0012234 2.5324 0.0013795 544.7566032298508 71.612 0.23959 71.136 70.976 71.216 -0.47609 15 9 2 0 0 0 0.53666 1 39191 39191 5.2307 0.47466 1 411600 15729 16203 10739 10944 18858 18858 -0.042788228277458984 GFFGPVFNYF 10 Unmodified _GFFGPVFNYF_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7866821289062 2 597.784567 1193.55458 NaN NaN NaN NaN NaN NaN NaN 54.812 1 54.346 53.846 54.846 -0.46664 0 0 0 0.81521 1 29717 29717 11.64 1.5664 1 15730 9547 10740 10945 18859 18859 -0.03445355551389184 GFGEGLED 8 Unmodified _GFGEGLED_ 0 0 0 ENST00000301454.8_1_19:6440093-6440207:-|nuORF ENST00000301454.8_1_19:6440093-6440207:-|nuORF ENST00000301454.8_1_19:6440093-6440207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.1754455566406 2 412.177058 822.339563 NaN NaN NaN NaN NaN NaN NaN 15.616 1 13.089 12.589 13.589 -2.5273 0 0 0 0.97444 1 8028 8028 2.5775 0 1 15731 11569 10741 10946 18860 18860 -0.07871322086998589 GFGFRSNVML 10 Unmodified _GFGFRSNVML_ 0 0 0 REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF REV__ENST00000513085.1_1_5:95728707-95748688:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2880249023438 2 564.286951 1126.55935 0.66347 0.00037439 1.2248 0.00069117 1.8883 0.0010656 564.2871831235773 60.208 0.24466 60.155 60.036 60.28 -0.053059 25 13 3 0 0 0 0.35903 1 32829 32829 24.021 0.87215 1 6321300 + 15732 22870 10742 10947 18861 18861 0.001132053197352434 GFGGGGYGGF 10 Unmodified _GFGGGGYGGF_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.3744506835938 1 875.368244 874.360967 -0.2636 -0.00023075 0.061737 5.4042E-05 -0.20187 -0.00017671 875.3681272493228 56.235 0.37555 56.235 56.028 56.403 0 43 17 3 0 0 0 0.68719 1 31319 31319 4.3292 0 1 17341000 15733 10528 10743 10948 18862 18862 -0.081238922676107 GFGGGGYGGF 10 Unmodified _GFGGGGYGGF_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 875.3679809570312 1 875.368244 874.360967 0.26559 0.00023249 -0.22385 -0.00019596 0.041739 3.6537E-05 875.3676813478319 56.474 0.21237 56.406 56.266 56.479 -0.068741 13 10 2 0 0 0 0.14518 1 30702 30702 40.449 0 1 2751500 15734 10528 10743 10948 18863 18863 -0.081238922676107 GFGGGGYGGF 10 Unmodified _GFGGGGYGGF_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 875.368244 874.360967 -0.71799 -0.00062851 1.7298 0.0015142 1.0118 0.00088566 875.3696864518033 56.84 0.35371 56.355 56.17 56.523 -0.48554 -0.025584 0.00018213 NaN 40.449 49 16 4 NaN NaN NaN NaN 0 NaN NaN 0 25044000 15735 10528 10743 10948 -0.081238922676107 GFGKRGGT 8 Unmodified _GFGKRGGT_ 0 0 0 REV__nc|ENSG00000254827|Q8N1D0|SLC22A18AS REV__nc|ENSG00000254827|Q8N1D0|SLC22A18AS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2125854492188 2 390.211569 778.408586 NaN NaN NaN NaN NaN NaN NaN 5.7462 1 5.7462 5.2462 6.2462 0 0 0 0 0.97444 1 2761 2761 0.52476 0.52476 1 + 15736 29983 10744 10949 18864 18864 0.010518067232510475 GFGKRGGT 8 Unmodified _GFGKRGGT_ 0 0 0 REV__nc|ENSG00000254827|Q8N1D0|SLC22A18AS REV__nc|ENSG00000254827|Q8N1D0|SLC22A18AS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2115783691406 2 390.211569 778.408586 NaN NaN NaN NaN NaN NaN NaN 9.7272 1 9.7448 9.2448 10.245 0.017581 0 0 0 0.97444 1 4819 4819 0.52476 0.52476 1 + 15737 29983 10744 10949 18865 18865 0.010518067232510475 GFGLASFRKDS 11 Unmodified _GFGLASFRKDS_ 0 0 0 REV__ENSG00000178773|ENST00000319518|CPNE7 REV__ENSG00000178773|ENST00000319518|CPNE7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2226867675781 3 395.540134 1183.59857 -0.017974 -7.1094E-06 -0.073553 -2.9093E-05 -0.091527 -3.6203E-05 395.53973766686454 34.413 0.19249 34.441 34.286 34.478 0.027401 14 8 3 0 0 0 0.30139 1 18148 18148 2.6312 0.13275 1 1170200 + 15738 23065 10745 10950 18866 18866 0.014116288749619343 GFGSFWKSCW 10 Unmodified _GFGSFWKSCW_ 0 0 0 ENST00000367602.7_1_1:180166494-180166779:+|nuORF ENST00000367602.7_1_1:180166494-180166779:+|nuORF ENST00000367602.7_1_1:180166494-180166779:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1802368164062 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 5.6071 1 5.6081 5.1081 6.1081 0.0010915 0 0 0 1.0024 1 2822 2822 0.13989 0 1 15739 12243 10746 10951 18867 18867 -0.07646770088649646 GFHGAFSF 8 Unmodified _GFHGAFSF_ 0 0 0 ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC MSMS AL20221201_MKP_PDAC_01 4 435.2012329101562 2 435.20067 868.386788 NaN NaN NaN NaN NaN NaN NaN 74.653 1 68.477 67.977 68.977 -6.1757 0 0 0 0.97348 1 48809 48809 5.7604 0.52976 1 15740 3061 10747 10952 18868 18868 -0.05266998025331304 GFHLDCVS 8 Unmodified _GFHLDCVS_ 0 0 0 REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF REV__ENST00000251127.10_1_13:102030999-102051370:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.1974792480469 2 439.19727 876.379988 NaN NaN NaN NaN NaN NaN NaN 18.592 1 18.615 18.115 19.115 0.023106 0 0 0 0.97444 1 9332 9332 2.5775 0 1 + 15741 24884 10748 10953 18869 18869 -0.06314678968215048 GFHRVLYF 8 Unmodified _GFHRVLYF_ 0 0 0 REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7796630859375 2 519.779619 1037.54469 0.6808 0.00035387 -1.5096 -0.00078465 -0.82877 -0.00043078 519.7790555876888 81.324 0.29002 80.832 80.749 81.04 -0.49248 26 12 3 0 0 0 0.74163 1 44558 44558 13.508 1.8676 1 1132200 + 15742 29087 10749 10954 18870 18870 0.02741501233890631 GFHRVLYF 8 Unmodified _GFHRVLYF_ 0 0 0 REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.779619 1037.54469 0.36136 0.00018783 -3.0731 -0.0015973 -2.7117 -0.0014095 519.7785798640173 80.826 0.33719 80.826 80.649 80.987 0 -0.0027633 -0.0011587 NaN 13.508 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 368120 + 15743 29087 10749 10954 0.02741501233890631 GFHRVLYF 8 Unmodified _GFHRVLYF_ 0 0 0 REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF REV__ENST00000585003.1_1_22:29196897-29197104:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.779619 1037.54469 0.6808 0.00035387 -1.5096 -0.00078465 -0.82877 -0.00043078 519.7790555876888 81.324 0.29002 80.832 80.749 81.04 -0.49248 0.0027633 0.00046671 NaN 13.508 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1132200 + 15744 29087 10749 10954 0.02741501233890631 GFIMPIEVHF 10 Oxidation (M) _GFIM(Oxidation (M))PIEVHF_ GFIM(1)PIEVHF GFIM(55)PIEVHF 0 0 1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3060913085938 2 603.30481 1204.59507 0.53374 0.00032201 1.7396 0.0010495 2.2733 0.0013715 603.3061115071376 95.263 0.44657 89.087 88.693 89.14 -6.1757 38 24 2 0 0 0 0.063761 1 62993 62993 54.774 33.902 1 7179900 15745 4209 10750 10955 18871 18871 742 0.0009524277670607262 GFIMPIEVHF 10 Unmodified _GFIMPIEVHF_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3085327148438 2 595.307352 1188.60015 0.2884 0.00017169 0.36458 0.00021704 0.65298 0.00038872 595.306867052357 99.585 0.09314 93.41 93.354 93.448 -6.1757 14 5 3 0 0 0 0.051739 1 66371 66371 57.471 37.018 1 52803000 15746 4209 10750 10956 18872 18872 0.01339546639337641 GFINKFENGF 10 Unmodified _GFINKFENGF_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.791015625 2 586.790381 1171.56621 0.49113 0.00028819 -0.34835 -0.00020441 0.14278 8.3779E-05 586.7900324458647 72.061 0.24583 71.585 71.441 71.686 -0.47609 17 9 2 0 0 0 0.66569 1 39443 39443 6.7232 2.3939 1 801200 + 15747 23865 10751 10957 18873 18873 -0.01271158528061278 GFISDWSDPDE 11 Unmodified _GFISDWSDPDE_ 0 0 0 REV__nc|ENSG00000140287|P19113-2|HDC REV__nc|ENSG00000140287|P19113-2|HDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.1756896972656 3 423.175297 1266.50406 0.39197 0.00016587 -0.69433 -0.00029382 -0.30235 -0.00012795 423.1749995663057 23.202 0.30918 20.423 20.232 20.542 -2.7784 51 28 2 0 0 0 0.71341 1 12585 12585 1.2148 0 1 15659000 + 15748 20458 10752 10958 18874 18874 -0.11852974457701748 GFKSRIPPQP 10 Unmodified _GFKSRIPPQP_ 0 0 0 ENST00000331495.7_1_17:43308016-43309782:+|nuORF ENST00000331495.7_1_17:43308016-43309782:+|nuORF ENST00000331495.7_1_17:43308016-43309782:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.9655456542969 3 376.217102 1125.62948 NaN NaN NaN NaN NaN NaN NaN 18.709 1 18.715 18.215 19.215 0.0060463 0 0 0 0.98857 1 9491 9491 1.9064 0.83491 1 15749 11861 10753 10959 18875 18875 0.0716882697984147 GFLCSSMP 8 Unmodified _GFLCSSMP_ 0 0 0 REV__ENST00000373610.7_1_1:32661873-32661975:+|nuORF REV__ENST00000373610.7_1_1:32661873-32661975:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 421.1852416992188 2 421.182774 840.350996 NaN NaN NaN NaN NaN NaN NaN 77.204 1 71.028 70.528 71.528 -6.1757 0 0 0 0.97348 1 50494 50494 5.7604 0 1 + 15750 26153 10754 10960 18876 18876 -0.07556539588858868 GFLDKNNDLLF 11 Unmodified _GFLDKNNDLLF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.33837890625 2 648.335153 1294.65575 0.56912 0.00036898 1.1811 0.00076573 1.7502 0.0011347 648.335540982407 82.019 0.36049 81.524 81.313 81.674 -0.4952 31 13 3 0 0 0 0.48615 2 44855 44855;44963 17.113 7.7298 1 1773300 15751 10015 10755 10961 18877;18878 18877 0.02021051360634374 GFLDKNNDLLF 11 Unmodified _GFLDKNNDLLF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20221201_MKP_PDAC_01 4 648.3352661132812 2 648.335153 1294.65575 NaN NaN NaN NaN NaN NaN NaN 98.097 1 91.922 91.422 92.422 -6.1757 0 0 0 0.027847 1 65031 65031 69.338 27.383 1 15752 10015 10755 10961 18879 18879 0.02021051360634374 GFLGGGFIHSF 11 Unmodified _GFLGGGFIHSF_ 0 0 0 REV__ENSG00000069345|ENST00000317089|DNAJA2 REV__ENSG00000069345|ENST00000317089|DNAJA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.78564453125 2 569.787641 1137.56073 NaN NaN NaN NaN NaN NaN NaN 28.264 1 28.293 27.793 28.793 0.029564 0 0 0 0.63153 1 14710 14710 19.257 5.3509 1 + 15753 17450 10756 10962 18880 18880 -0.0025483731988060754 GFLRNWHQF 9 Unmodified _GFLRNWHQF_ 0 0 0 ENST00000488129.1_1_3:113676552-113677474:+|nuORF;ENSG00000184307|ENST00000638807|ZDHHC23 ENST00000488129.1_1_3:113676552-113677474:+|nuORF ENST00000488129.1_1_3:113676552-113677474:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3035278320312 2 602.804157 1203.59376 0.7738 0.00046645 -1.5178 -0.00091496 -0.74405 -0.00044851 603.3042443152717 81.267 0.23459 80.774 80.698 80.932 -0.49247 20 11 3 0 0 0 0.53666 1 44468 44468 5.2307 0 1 1044500 15754 9244 10757 10963 18881 18881 0.0001078952284387924 GFLVSEKV 8 Unmodified _GFLVSEKV_ 0 0 0 ENST00000368194.7_1_1:157014344-157014518:-|nuORF ENST00000368194.7_1_1:157014344-157014518:-|nuORF ENST00000368194.7_1_1:157014344-157014518:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7548217773438 2 439.752736 877.490919 0.56166 0.00024699 1.8622 0.0008189 2.4238 0.0010659 439.7535326250927 51.987 0.27535 51.928 51.772 52.047 -0.058918 21 12 2 0 0 0 0.75262 1 28123 28123 12.532 0 1 2041900 15755 12261 10758 10964 18882 18882 0.04727284011528354 GFNPHPSRF 9 Unmodified _GFNPHPSRF_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5107421875 3 353.510397 1057.50936 NaN NaN NaN NaN NaN NaN NaN 28.137 1 28.091 27.591 28.591 -0.046408 0 0 0 0.7818 1 14518 14518 4.1895 0.59301 1 15756 7477 10759 10965 18883 18883 -0.017091612939111656 GFNPHPSRF 9 Unmodified _GFNPHPSRF_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5107116699219 3 353.510397 1057.50936 0.099965 3.5339E-05 0.76533 0.00027055 0.8653 0.00030589 353.51063062616925 27.959 0.17682 27.989 27.906 28.083 0.029564 11 6 2 0 0 0 0.40476 1 14560 14560 8.4443 4.8478 1 2172300 15757 7477 10759 10965 18884 18884 -0.017091612939111656 GFNPHPSRF 9 Unmodified _GFNPHPSRF_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 353.510397 1057.50936 0.5219 0.0001845 0.64578 0.00022829 1.1677 0.00041279 353.51063723972277 28.101 0.074614 28.055 28.013 28.088 -0.046408 0.033008 -3.3232E-05 NaN 8.4443 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1919500 15758 7477 10759 10965 -0.017091612939111656 GFPCVRYSFIL 11 Unmodified _GFPCVRYSFIL_ 0 0 0 ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.3408203125 2 651.339184 1300.66381 0.99135 0.00064571 -0.66293 -0.00043179 0.32842 0.00021391 651.3379262078635 99.483 0.080826 93.307 93.243 93.324 -6.1757 6 4 2 0 0 0 0.35243 1 66274 66274 24.021 5.8742 1 21930000 15759 13243 10760 10966 18885 18885 0.025509070764428543 GFPKQPPLQL 10 Unmodified _GFPKQPPLQL_ 0 0 0 REV__nc|ENSG00000172667|Q9HA38-2|ZMAT3 REV__nc|ENSG00000172667|Q9HA38-2|ZMAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2463684082031 3 375.553603 1123.63898 0.40934 0.00015373 0.38942 0.00014625 0.79875 0.00029997 375.55419834470047 48.022 0.25276 47.983 47.89 48.142 -0.038643 27 12 3 0 0 0 0.23862 1 25954 25954 1.9064 0.1641 1 1747100 + 15760 22665 10761 10967 18886 18886 0.08210595265359188 GFPQYLEL 8 Unmodified _GFPQYLEL_ 0 0 0 ENST00000457542.6_2_15:42118039-42118483:+|nuORF ENST00000457542.6_2_15:42118039-42118483:+|nuORF ENST00000457542.6_2_15:42118039-42118483:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4996948242188 1 966.49311 965.485833 0.33427 0.00032307 -0.052534 -5.0774E-05 0.28174 0.0002723 966.4930330552105 91.443 0.31931 90.948 90.756 91.076 -0.49457 28 14 3 0 0 0 0.80975 1 49997 49997 0.79363 0 1 968910 15761 13615 10762 10968 18887 18887 0.0017098014888006219 GFPRAAGA 8 Unmodified _GFPRAAGA_ 0 0 0 ENST00000262158.6_1_18:46446894-46447551:-|nuORF ENST00000262158.6_1_18:46446894-46447551:-|nuORF ENST00000262158.6_1_18:46446894-46447551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.7008056640625 2 373.700838 745.387122 -0.3019 -0.00011282 -0.8662 -0.0003237 -1.1681 -0.00043652 373.70041571733134 40.639 0.17464 40.639 40.545 40.72 0 14 9 2 0 0 0 0.80992 1 21872 21872 0.69038 0 1 2768300 15762 11261 10763 10969 18888 18888 0.004244216945039625 GFPSSVAALRF 11 Unmodified _GFPSSVAALRF_ 0 0 0 ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF ENSG00000181625|ENST00000330181|SLX1B ENSG00000181625|ENST00000330181|SLX1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3128662109375 2 576.314023 1150.61349 0.41319 0.00023813 -1.4325 -0.00082556 -1.0193 -0.00058743 576.3123781600821 73.363 0.62631 73.407 73.129 73.755 0.043983 61 28 4 0 0 0 0.091371 2 40372 40372;40483 61.602 43.467 1 3972700 15763 4379 10764 10970 18889;18890 18889 0.04421120742927087 GFQSFLAYL 9 Unmodified _GFQSFLAYL_ 0 0 0 REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.271240234375 2 523.271293 1044.52803 -0.86759 -0.00045399 0.097269 5.0898E-05 -0.77032 -0.00040309 523.2714554284839 56.185 0.35157 55.699 55.531 55.882 -0.48554 39 17 3 0 0 0 0.1773 1 30469 30469 25.399 0 1 32363000 + 15764 19523 10765 10971 18891 18891 0.007549555572722966 GFQSFLAYL 9 Unmodified _GFQSFLAYL_ 0 0 0 REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF REV__ENST00000478522.1_1_20:16710709-16713038:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.271293 1044.52803 -0.86759 -0.00045399 0.097269 5.0898E-05 -0.77032 -0.00040309 523.2714554284839 56.185 0.35157 55.699 55.531 55.882 -0.48554 0 0 NaN 25.399 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 32363000 + 15765 19523 10765 10971 0.007549555572722966 GFQSGFLRYP 10 Unmodified _GFQSGFLRYP_ 0 0 0 nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA nc|ENSG00000143776|Q5VT25-3|CDC42BPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5362243652344 3 391.201341 1170.58219 0.083764 3.2769E-05 0.13617 5.3271E-05 0.21994 8.6039E-05 391.2013945324974 42.282 0.23579 42.273 42.164 42.4 -0.0088196 16 10 2 0 0 0 0.67413 1 22628 22628 5.7834 1.5939 1 7517200 15766 5550 10766 10972 18892 18892 0.003725477088437401 GFQVKGAL 8 Unmodified _GFQVKGAL_ 0 0 0 REV__ENSG00000177752|ENST00000415895|YIPF7 REV__ENSG00000177752|ENST00000415895|YIPF7 MSMS AL20221201_MKP_PDAC_01 4 410.2398376464844 2 410.239796 818.465038 NaN NaN NaN NaN NaN NaN NaN 78.534 1 72.358 71.858 72.858 -6.1757 0 0 0 0.95973 1 51409 51409 8.5933 2.2392 1 + 15767 23004 10767 10973 18893 18893 0.04854434559899801 GFRKRKHDN 9 Unmodified _GFRKRKHDN_ 0 0 0 ENSG00000116918|ENST00000366639|TSNAX;chr1:231528826-231529261|82|13.94|0.0|20.41|+|2|TSNAX-DISC1,None|1;ENST00000602825.5_1_1:231664421-231690428:+|nuORF ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.4794311523438 3 386.547734 1156.62137 -0.49081 -0.00018972 4.1093 0.0015884 3.6185 0.0013987 386.5498927767161 25.585 0.20712 25.585 25.447 25.654 0 17 9 3 0 0 0 0.60485 1 13079 13079 1.0715 0.10919 1 614540 15768 3267 10768 10974 18894 18894 0.04932692783086168 GFRNRIEKL 9 Unmodified _GFRNRIEKL_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.6950988769531 3 378.224368 1131.65128 1.6044 0.00060682 1.0999 0.00041602 2.7043 0.0010228 378.224841972428 19.965 0.29661 17.309 17.174 17.471 -2.6564 40 16 3 0 0 0 0.58145 1 10535 10535 2.4985 0.59211 1 4842000 + 15769 23865 10769 10975 18895 18895 0.0907163172842047 GFRYKWAPDY 10 Unmodified _GFRYKWAPDY_ 0 0 0 REV__nc|ENSG00000096088|P20142-2|PGC REV__nc|ENSG00000096088|P20142-2|PGC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8818664550781 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 17.006 1 17.011 16.511 17.511 0.0050564 0 0 0 0.99248 1 8557 8557 0.62683 0.39098 1 + 15770 17958 10770 10976 18896 18896 -0.019437807453869027 GFSCNLSSTLL 11 Unmodified _GFSCNLSSTLL_ 0 0 0 REV__nc|ENSG00000167741|Q6P531-2|GGT6 REV__nc|ENSG00000167741|Q6P531-2|GGT6 MSMS AL20221201_MKP_PDAC_01 4 381.1902770996094 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 65.689 1 59.513 59.013 60.013 -6.1757 0 0 0 0.93613 1 42658 42658 2.4348 0 1 + 15771 22251 10771 10977 18897 18897 -0.01614241845209108 GFSCYGDIFR 10 Unmodified _GFSCYGDIFR_ 0 0 0 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7606811523438 2 582.760766 1163.50698 0.30837 0.00017971 1.0597 0.00061755 1.3681 0.00079726 582.7616962300516 59.317 0.72759 59.317 59.068 59.796 0 71 31 5 0 0 0 0.67033 2 32973 32973;33076 6.2058 1.8765 1 32086000 15772 422 10772 10978 18898;18899 18898 -0.0682337781388469 GFSEIVSAMAL 11 Unmodified _GFSEIVSAMAL_ 0 0 0 ENST00000480842.1_1_6:160211577-160211676:+|nuORF ENST00000480842.1_1_6:160211577-160211676:+|nuORF ENST00000480842.1_1_6:160211577-160211676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7853393554688 2 562.78645 1123.55835 1.4237 0.00080125 -0.12851 -7.2325E-05 1.2952 0.00072892 562.7851082445749 53.915 0.58521 48.05 47.754 48.339 -5.8653 102 33 4 0 0 0 0.48615 1 34143 34143 17.113 0.026346 1 127630000 15773 14066 10773 10979 18900 18900 0.0015094616016995133 GFSFLFSFLK 10 Unmodified _GFSFLFSFLK_ 0 0 0 ENST00000328194.7_2_11:9160490-9160769:-|nuORF ENST00000328194.7_2_11:9160490-9160769:-|nuORF ENST00000328194.7_2_11:9160490-9160769:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3222045898438 2 596.823692 1191.63283 0.31056 0.00018535 0.8466 0.00050527 1.1572 0.00069062 596.8269460598459 76.033 1.919 69.857 68.473 70.392 -6.1757 265 104 4 0 0 0 0.43662 1 49215 49215 22.736 5.6234 1 48661000 15774 11832 10774 10980 18901 18901 0.04468077033834561 GFSGVLGGGR 10 Unmodified _GFSGVLGGGR_ 0 0 0 ENST00000610272.1_1_1:179851416-179851605:-|nuORF ENST00000610272.1_1_1:179851416-179851605:-|nuORF ENST00000610272.1_1_1:179851416-179851605:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2659912109375 2 453.743234 905.471915 -0.13254 -6.0141E-05 -1.3772 -0.00062489 -1.5097 -0.00068503 453.74175832159733 61.456 0.27872 60.967 60.88 61.158 -0.48932 20 12 2 0 0 0 0.22667 1 33493 33493 15.847 2.3393 1 794330 15775 15890 10775 10981 18902 18902 0.015397474404721834 GFSIRNDSVWL 11 Unmodified _GFSIRNDSVWL_ 0 0 0 REV__ENST00000252032.9_1_20:3232842-3233022:-|nuORF REV__ENST00000252032.9_1_20:3232842-3233022:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7669982910156 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 38.202 1 38.219 37.719 38.719 0.01704 0 0 0 0.93893 1 20308 20308 1.3296 0.11481 1 + 15776 24889 10776 10982 18903 18903 0.016715869377549097 GFSLDTCRSI 10 Unmodified _GFSLDTCRSI_ 0 0 0 ENSG00000256812|ENST00000457326|CAPNS2 ENSG00000256812|ENST00000457326|CAPNS2 ENSG00000256812|ENST00000457326|CAPNS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2648315429688 2 549.766049 1097.51754 0.34423 0.00018925 -1.0203 -0.00056093 -0.67608 -0.00037168 549.7658181550833 39.771 0.64007 35.242 34.98 35.62 -4.5294 185 47 6 0 0 0 0.33553 1 23777 23777 25.399 3.6527 1 1189700000 15777 10805 10777 10983 18904 18904 -0.02731395159457861 GFSWVDSHTTF 11 Unmodified _GFSWVDSHTTF_ 0 0 0 REV__ENSG00000027644|ENST00000368195|INSRR REV__ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.29052734375 2 642.288202 1282.56185 0.18186 0.00011681 -0.82398 -0.00052923 -0.64212 -0.00041242 642.2901166088886 43.116 0.5097 43.116 42.928 43.438 0 49 25 3 0 0 0 0.48615 1 23453 23453 17.113 1.2657 1 7892100 + 15778 17133 10778 10984 18905 18905 -0.0681266774163305 GFSYRQRITY 10 Unmodified _GFSYRQRITY_ 0 0 0 nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20 nc|ENSG00000173157|P59510|ADAMTS20 nc|ENSG00000173157|P59510|ADAMTS20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8325805664062 2 645.833111 1289.65167 -0.049144 -3.1739E-05 -0.79167 -0.00051129 -0.84081 -0.00054303 645.8324438206646 62.932 0.36929 62.932 62.704 63.073 0 28 15 2 0 0 0 0.62068 2 35146 35044;35146 10.074 0 1 3266400 15779 8293 10779 10985 18906;18907 18907 0.01843006657600199 GFSYRQRITY 10 Unmodified _GFSYRQRITY_ 0 0 0 nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20 nc|ENSG00000173157|P59510|ADAMTS20 nc|ENSG00000173157|P59510|ADAMTS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.334716796875 2 645.833111 1289.65167 0.96093 0.0006206 -0.84999 -0.00054895 0.11094 7.1651E-05 646.3342028537231 70.901 0.32491 64.726 64.596 64.921 -6.1757 26 16 2 0 0 0 0.067957 1 46339 46339 53.833 0 1 26209000 15780 8293 10779 10985 18908 18908 0.01843006657600199 GFTDIVTVQ 9 Unmodified _GFTDIVTVQ_ 0 0 0 ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46306285-46312915:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5120239257812 1 979.509488 978.502212 0.10085 9.8786E-05 2.6322 0.0025783 2.7331 0.0026771 979.5119404838839 78.155 0.23851 78.155 78.03 78.268 0 16 9 2 0 0 0 0.14602 1 43418 43418 28.487 5.3384 1 876650 15781 6708 10780 10986 18909 18909 0.012100613149982564 GFVDIFPKF 9 Unmodified _GFVDIFPKF_ 0 0 0 REV__ENSG00000151835|ENST00000382292|SACS REV__ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2894897460938 2 535.289485 1068.56442 1.1127 0.0005956 -1.2597 -0.00067431 -0.14703 -7.8702E-05 535.2881864054826 89.317 0.87335 83.142 82.901 83.774 -6.1757 76 48 3 0 0 0 0.070838 2 59071 58936;59071 39.957 18.931 1 28857000 + 15782 21093 10781 10987 18910;18911 18911 0.0328783245397517 GFVHCSGP 8 Unmodified _GFVHCSGP_ 0 0 0 REV__ENSG00000182749|ENST00000675840|PAQR7 REV__ENSG00000182749|ENST00000675840|PAQR7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8491821289062 2 402.178881 802.343209 NaN NaN NaN NaN NaN NaN NaN 1.2379 1 1.1646 0.66465 1.6646 -0.07329 0 0 0 0.97444 1 620 620 0.69038 0.088878 1 + 15783 23292 10782 10988 18912 18912 -0.0658693079412842 GFVVNRGG 8 Unmodified _GFVVNRGG_ 0 0 0 REV__ENSG00000172209|ENST00000304402|GPR22 REV__ENSG00000172209|ENST00000304402|GPR22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.2192993164062 2 403.219395 804.424236 -0.40532 -0.00016343 2.7459 0.0011072 2.3406 0.00094377 403.22005533140543 29.464 0.32618 29.464 29.202 29.528 0 32 15 3 0 0 0 0.80975 1 15186 15186 0.79363 0 1 2227800 + 15784 22633 10783 10989 18913 18913 0.014200932402900435 GFYPAEITLTW 11 Unmodified _GFYPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.328369140625 2 649.326796 1296.63904 3.96 0.0025714 -1.2952 -0.000841 2.6648 0.0017304 649.32590033908 99.429 0.18275 99.393 99.294 99.477 -0.036301 21 6 5 0 0 0 0.10551 1 55224 55224 41.84 28.225 1 37174000 15785 10298;10315;10306;10398;16517;10636 10784 10990 18914 18914 0.0025855047470031423 GFYPAEITLTW 11 Unmodified _GFYPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.3271484375 2 649.326796 1296.63904 1.354 0.00087919 -0.47805 -0.00031041 0.87595 0.00056878 649.3264257925979 100.79 0.14284 94.613 94.528 94.67 -6.1757 37 9 5 0 0 0 0.16973 1 67460 67460 34.402 20.787 1 522860000 15786 10298;10315;10306;10398;16517;10636 10784 10990 18915 18915 0.0025855047470031423 GFYQFLEP 8 Unmodified _GFYQFLEP_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 999.98095703125 1 1000.47746 999.470183 0.31037 0.00031052 -0.1476 -0.00014767 0.16277 0.00016285 1000.4782472915329 92.622 0.22788 92.164 92.056 92.284 -0.4574 16 10 2 0 0 0 8.7369 1 50647 50647 18.135 0 1 582960 + 15787 20157 10785 10991 18916 18916 -0.02957306368148238 GFYVESIWLSE 11 Unmodified _GFYVESIWLSE_ 0 0 0 nc|ENSG00000183668|Q00887-2|PSG9 nc|ENSG00000183668|Q00887-2|PSG9 nc|ENSG00000183668|Q00887-2|PSG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 665.3233032226562 2 665.321711 1328.62887 2.0294 0.0013502 -0.064853 -4.3148E-05 1.9646 0.0013071 665.3215771885018 92.942 0.57393 92.965 92.668 93.242 0.022987 63 22 4 0 0 0 0.60863 2 51643 51643;51738 19.257 9.8739 1 40873000 15788 16449 10786 10992 18917;18918 18917 -0.022300572505173477 GFYWALLL 8 Unmodified _GFYWALLL_ 0 0 0 REV__ENSG00000106025|ENST00000222747|TSPAN12 REV__ENSG00000106025|ENST00000222747|TSPAN12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7723083496094 2 491.773471 981.53239 0.6896 0.00033913 -2.6544 -0.0013054 -1.9648 -0.00096624 491.77230696225746 71.593 0.31462 71.117 70.927 71.242 -0.47609 19 12 2 0 0 0 0.70131 1 39159 39159 17.087 2.5049 1 910970 + 15789 18483 10787 10993 18919 18919 0.04088464770848077 GGAAAVAAFS 10 Unmodified _GGAAAVAAFS_ 0 0 0 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.4173583984375 1 821.415194 820.407917 0.06378 5.239E-05 0.59525 0.00048895 0.65903 0.00054134 821.4157513964774 31.367 0.30838 31.367 31.174 31.482 0 30 14 3 0 0 0 0.34789 1 16371 16371 24.674 0 1 3872400 15790 7750 10788 10994 18920 18920 -0.009470327164763148 GGALVLMF 8 Unmodified _GGALVLMF_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MSMS AL20221201_MKP_PDAC_01 4 404.2260131835938 2 404.2253 806.436046 NaN NaN NaN NaN NaN NaN NaN 4.9072 1 2.4252 1.9252 2.9252 -2.482 0 0 0 0.97444 1 2491 2491 2.8892 0 1 15791 3338 10789 10995 18921 18921 0.02508573939269354 GGALVLMF 8 Unmodified _GGALVLMF_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MSMS AL20221201_MKP_PDAC_01 4 404.2261962890625 2 404.2253 806.436046 NaN NaN NaN NaN NaN NaN NaN 5.7105 1 3.2286 2.7286 3.7286 -2.482 0 0 0 0.97444 1 2896 2896 2.8892 0 1 15792 3338 10789 10995 18922 18922 0.02508573939269354 GGALVLMF 8 Unmodified _GGALVLMF_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MSMS AL20221201_MKP_PDAC_01 4 404.2269592285156 2 404.2253 806.436046 NaN NaN NaN NaN NaN NaN NaN 5.9742 1 3.4923 2.9923 3.9923 -2.482 0 0 0 0.97444 1 3028 3028 2.8892 0 1 15793 3338 10789 10995 18923 18923 0.02508573939269354 GGALYWKE 8 Unmodified _GGALYWKE_ 0 0 0 ENST00000299353.6_1_10:104622682-104660454:+|nuORF;ENSG00000214435|ENST00000369880|AS3MT;nc|ENSG00000214435|Q9HBK9-2|AS3MT ENST00000299353.6_1_10:104622682-104660454:+|nuORF ENST00000299353.6_1_10:104622682-104660454:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2349243164062 2 462.23471 922.454868 NaN NaN NaN NaN NaN NaN NaN 26.282 1 26.282 25.782 26.782 0 0 0 0 0.97444 1 13506 13506 5.2307 0.47466 1 15794 10494 10790 10996 18924 18924 -0.009461731653459537 GGAPVQALRPR 11 Unmodified _GGAPVQALRPR_ 0 0 0 ENST00000260324.11_1_15:45927092-45951106:+|nuORF ENST00000260324.11_1_15:45927092-45951106:+|nuORF ENST00000260324.11_1_15:45927092-45951106:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5566101074219 3 374.556118 1120.64652 0.11131 4.1694E-05 0.6281 0.00023526 0.73941 0.00027695 374.5564827633738 28.538 0.18682 28.568 28.494 28.681 0.029566 9 6 2 0 0 0 0.69509 1 14878 14878 4.7159 1.8726 1 860570 15795 11224 10791 10997 18925 18925 0.09102747585643556 GGARIWAG 8 Unmodified _GGARIWAG_ 0 0 0 REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2142639160156 2 394.214112 786.413671 0.12099 4.7697E-05 1.2692 0.00050035 1.3902 0.00054805 394.2146347413088 45.733 0.19455 45.733 45.625 45.819 0 15 9 2 0 0 0 0.80143 1 24957 24957 5.7604 0 1 4898300 + 15796 25649 10792 10998 18926 18926 0.011921105858505143 GGARIWAG 8 Unmodified _GGARIWAG_ 0 0 0 REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.214112 786.413671 0.12099 4.7697E-05 1.2692 0.00050035 1.3902 0.00054805 394.2146347413088 45.733 0.19455 45.733 45.625 45.819 0 0.0061481 -0.0005997 NaN 5.7604 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4898300 + 15797 25649 10792 10998 0.011921105858505143 GGARIWAG 8 Unmodified _GGARIWAG_ 0 0 0 REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF REV__ENST00000336702.7_1_11:118978410-118978497:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 394.214112 786.413671 0.02432 9.5873E-06 2.2364 0.00088164 2.2608 0.00089122 394.2148138561757 45.749 0.28168 45.72 45.582 45.864 -0.028011 -0.0061481 0.00016288 NaN 5.7604 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 13101000 + 15798 25649 10792 10998 0.011921105858505143 GGASPLEDP 9 Unmodified _GGASPLEDP_ 0 0 0 REV__nc|ENSG00000131504|O60610-2|DIAPH1 REV__nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.3885498046875 1 842.389039 841.381762 -0.43419 -0.00036576 0.44506 0.00037491 0.010867 9.1539E-06 842.3895211473679 48.385 0.40562 48.385 48.212 48.618 0 48 19 3 0 0 0 0.042911 1 26480 26480 48.346 6.2513 1 24918000 + 15799 19798 10793 10999 18927 18927 -0.0452734667861705 GGASPLEDP 9 Unmodified _GGASPLEDP_ 0 0 0 REV__nc|ENSG00000131504|O60610-2|DIAPH1 REV__nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 842.3881225585938 1 842.389039 841.381762 0.48855 0.00041155 0.037205 3.1341E-05 0.52576 0.00044289 842.388926453194 56.304 0.51781 50.327 50.097 50.615 -5.9769 58 29 3 0 0 0 0.026094 2 35837 35837;35956 57.471 11.45 1 62043000 + 15800 19798 10793 10999 18928;18929 18928 -0.0452734667861705 GGASPLEDP 9 Unmodified _GGASPLEDP_ 0 0 0 REV__nc|ENSG00000131504|O60610-2|DIAPH1 REV__nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 842.389039 841.381762 -0.013802 -1.1627E-05 1.2067 0.0010165 1.1929 0.0010049 842.3898263656924 50.4 0.23614 50.4 50.259 50.495 0 0.036573 0.00085523 NaN 57.471 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1557700 + 15801 19798 10793 10999 -0.0452734667861705 GGASPLEDP 9 Unmodified _GGASPLEDP_ 0 0 0 REV__nc|ENSG00000131504|O60610-2|DIAPH1 REV__nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 842.389039 841.381762 0.48855 0.00041155 0.037205 3.1341E-05 0.52576 0.00044289 842.388926453194 56.304 0.51781 50.327 50.097 50.615 -5.9769 -0.036573 -0.00012994 NaN 57.471 58 29 3 NaN NaN NaN NaN 0 NaN NaN 0 62043000 + 15802 19798 10793 10999 -0.0452734667861705 GGASWLRN 8 Unmodified _GGASWLRN_ 0 0 0 ENST00000476339.1_1_5:140895497-140895794:-|nuORF ENST00000476339.1_1_5:140895497-140895794:-|nuORF ENST00000476339.1_1_5:140895497-140895794:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8884582519531 2 430.722301 859.43005 -0.10948 -4.7154E-05 0.1508 6.4951E-05 0.04132 1.7797E-05 430.7224053822453 36.436 0.12499 36.458 36.349 36.474 0.021545 7 5 2 0 0 0 8.7369 1 19310 19310 12.532 1.7076 1 2168700 15803 13979 10794 11000 18930 18930 -0.005288082480660705 GGATHLMK 8 Unmodified _GGATHLMK_ 0 0 0 REV__ENSG00000164683|ENST00000354724|HEY1 REV__ENSG00000164683|ENST00000354724|HEY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.7135620117188 2 407.71563 813.416708 -0.67816 -0.0002765 -2.7604 -0.0011255 -3.4386 -0.001402 407.713887668443 27.098 0.26523 27.098 26.93 27.196 0 19 12 2 0 0 0 0.63229 1 13936 13936 23.148 1.4018 1 5413400 + 15804 21938 10795 11001 18931 18931 0.002536176483545205 GGATHLMK 8 Unmodified _GGATHLMK_ 0 0 0 REV__ENSG00000164683|ENST00000354724|HEY1 REV__ENSG00000164683|ENST00000354724|HEY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5514221191406 2 407.71563 813.416708 -0.67816 -0.0002765 -2.7604 -0.0011255 -3.4386 -0.001402 407.713887668443 27.098 0.26523 27.098 26.93 27.196 0 19 12 2 0 0 0 8.7369 1 13926 13926 16.942 0 1 5413400 + 15805 21938 10795 11001 18932 18932 0.002536176483545205 GGATHLMK 8 Unmodified _GGATHLMK_ 0 0 0 REV__ENSG00000164683|ENST00000354724|HEY1 REV__ENSG00000164683|ENST00000354724|HEY1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.7142028808594 2 407.71563 813.416708 NaN NaN NaN NaN NaN NaN NaN 26.935 1 26.963 26.463 27.463 0.028664 0 0 0 0.53879 1 13986 13986 38.151 17.28 1 + 15806 21938 10795 11001 18933 18933 0.002536176483545205 GGATHLMK 8 Unmodified _GGATHLMK_ 0 0 0 REV__ENSG00000164683|ENST00000354724|HEY1 REV__ENSG00000164683|ENST00000354724|HEY1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 407.71563 813.416708 1.2436 0.00050703 -4.2764 -0.0017436 -3.0328 -0.0012365 407.713820131283 30.689 0.43026 27.192 26.936 27.366 -3.497 0.047132 -0.0001379 NaN 23.148 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 117730000 + 15807 21938 10795 11001 0.002536176483545205 GGAVTYVATI 10 Unmodified _GGAVTYVATI_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2606811523438 2 476.260925 950.507297 0.39088 0.00018616 0.13052 6.2159E-05 0.5214 0.00024832 476.26106705569 59.794 0.2579 59.303 59.171 59.429 -0.49079 20 12 2 0 0 0 0.39779 1 32527 32527 21.747 0.87544 1 4158000 + 15808 29730 10796 11002 18934 18934 0.030063651776117695 GGAVVTEMSL 10 Unmodified _GGAVVTEMSL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2444152832031 2 482.244418 962.474282 0.81264 0.00039189 -1.8419 -0.00088825 -1.0293 -0.00049636 482.24351184700197 47.686 0.29354 47.686 47.558 47.852 0 19 13 2 0 0 0 0.48834 1 26124 26124 16.942 1.0951 1 2110400 + 15809 22247 10797 11003 18935 18935 -0.008455849367464907 GGCPLMVF 8 Unmodified _GGCPLMVF_ 0 0 0 REV__ENST00000459625.5_1_12:48184825-48185932:-|nuORF REV__ENST00000459625.5_1_12:48184825-48185932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.1948547363281 2 412.195685 822.376817 -0.060559 -2.4962E-05 -1.3023 -0.00053679 -1.3628 -0.00056175 412.19514629122443 72.898 0.36943 72.94 72.719 73.089 0.041733 31 17 2 0 0 0 0.80624 1 40225 40225 2.8892 0.58649 1 10933000 + 15810 17330 10798 11004 18936 18936 -0.04147645346574791 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2116088867188 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 1.7721 1 1.7001 1.2001 2.2001 -0.072029 0 0 0 0.9435 1 885 885 0 0 1 15811 16578 10799 11005 18937 18937 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2080078125 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 2.2533 1 2.1813 1.6813 2.6813 -0.072029 0 0 0 0.9435 1 1120 1120 0 0 1 15812 16578 10799 11005 18938 18938 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.21044921875 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 4.2037 1 4.1308 3.6308 4.6308 -0.072869 0 0 0 0.9435 1 2078 2078 0 0 1 15813 16578 10799 11005 18939 18939 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.208740234375 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 5.6184 1 5.5409 5.0409 6.0409 -0.07749 0 0 0 0.9435 1 2774 2774 0 0 1 15814 16578 10799 11005 18940 18940 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2069702148438 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 6.9946 1 6.91 6.41 7.41 -0.08463 0 0 0 0.9435 1 3445 3445 0 0 1 15815 16578 10799 11005 18941 18941 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2101440429688 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 7.8709 1 7.7793 7.2793 8.2793 -0.09156 0 0 0 0.9435 1 3866 3866 0 0 1 15816 16578 10799 11005 18942 18942 -0.1922362249338221 GGDEEDEEGYN 11 Unmodified _GGDEEDEEGYN_ 0 0 0 nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP nc|ENSG00000248546|O43423|ANP32CP MSMS AL20221201_MKP_PDAC_01 4 607.2080688476562 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 9.246 1 6.7641 6.2641 7.2641 -2.482 0 0 0 0.9435 1 4665 4665 0 0 1 15817 16578 10799 11005 18943 18943 -0.1922362249338221 GGDGDHSS 8 Unmodified _GGDGDHSS_ 0 0 0 nc|ENSG00000291074|Q6NUI1|CCDC144NL nc|ENSG00000291074|Q6NUI1|CCDC144NL nc|ENSG00000291074|Q6NUI1|CCDC144NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1322326660156 2 366.133182 730.251811 -0.71729 -0.00026262 -1.5993 -0.00058557 -2.3166 -0.0008482 366.13245862633204 55.421 0.20401 55.421 55.327 55.531 0 11 8 2 0 0 0 0.80992 1 30801 30801 0.69038 0.69038 1 668980 15818 16642 10800 11006 18944 18944 -0.12410522957748071 GGDGDNFGC 9 Unmodified _GGDGDNFGC_ 0 0 0 ENST00000512222.2_1_4:83050145-83050523:+|nuORF ENST00000512222.2_1_4:83050145-83050523:+|nuORF ENST00000512222.2_1_4:83050145-83050523:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1421508789062 2 421.142692 840.270831 0.037043 1.5601E-05 -1.8674 -0.00078643 -1.8303 -0.00077083 421.1420379915282 79.345 0.32 79.345 79.203 79.523 0 16 12 2 0 0 0 0.62242 1 44106 44106 0 0 1 527690 15819 14621 10801 11007 18945 18945 -0.15569309658349084 GGDMGLAT 8 Unmodified _GGDMGLAT_ 0 0 0 REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.1643981933594 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 88.714 1 82.539 82.039 83.039 -6.1757 0 0 0 0.97444 1 58539 58539 5.2307 2.6532 1 + 15820 28964 10802 11008 18946 18946 -0.060103432679397883 GGDNEDSHRR 10 Unmodified _GGDNEDSHRR_ 0 0 0 REV__ENSG00000136937|ENST00000375147|NCBP1 REV__ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5032653808594 3 381.50263 1141.48606 0.89585 0.00034177 1.2808 0.00048862 2.1766 0.00083039 381.5031291084184 17.496 0.30267 14.909 14.775 15.077 -2.5866 104 59 2 0 0 0 0.67459 1 9114 9114 3.0723 0.98626 1 7741300 + 15821 20202 10803 11009 18947 18947 -0.07902251869199972 GGEKEVPP 8 Unmodified _GGEKEVPP_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7109985351562 2 406.711068 811.407583 0.047595 1.9358E-05 0.31426 0.00012781 0.36186 0.00014717 406.71116254001254 61.445 0.36583 61.445 61.275 61.641 0 31 16 3 0 0 0 0.78849 1 34345 34345 9.3474 0.75416 1 3161000 15822 6628;16309 10804 11010 18948 18948 -0.005664524363282908 GGEKLQDAYY 10 Unmodified _GGEKLQDAYY_ 0 0 0 ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE ENST00000598969.5_1_19:19010490-19016602:-|nuORF ENST00000598969.5_1_19:19010490-19016602:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.8233032226562 2 572.269478 1142.5244 0.71714 0.0004104 3.6784 0.002105 4.3955 0.0025154 572.272260975712 46.004 0.27443 41.049 40.951 41.226 -4.9549 24 17 2 0 0 0 0.23634 1 28290 28290 6.7232 0.51738 1 9705000 15823 2349 10805 11011 18949 18949 -0.041157590072543826 GGERLAGWGT 10 Unmodified _GGERLAGWGT_ 0 0 0 REV__ENSG00000187045|ENST00000676104|TMPRSS6 REV__ENSG00000187045|ENST00000676104|TMPRSS6 MSMS AL20221201_MKP_PDAC_01 4 502.2520751953125 2 502.251423 1002.48829 NaN NaN NaN NaN NaN NaN NaN 46.749 1 41.669 41.169 42.169 -5.0805 0 0 0 0.47175 1 28939 28939 27.629 3.6082 1 + 15824 23616 10806 11012 18950 18950 -0.012851713934196596 GGEVVLPK 8 Unmodified _GGEVVLPK_ 0 0 0 ENSG00000166743|ENST00000520010|ACSM1 ENSG00000166743|ENST00000520010|ACSM1 ENSG00000166743|ENST00000520010|ACSM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.7404479980469 2 399.739628 797.464704 NaN NaN NaN NaN NaN NaN NaN 70.511 1 70.034 69.534 70.534 -0.47735 0 0 0 0.88073 1 38569 38569 19.439 1.304 1 15825 7525 10807 11013 18951 18951 0.05787014840041138 GGFTPMPI 8 Unmodified _GGFTPMPI_ 0 0 0 REV__ENST00000477081.1_1_17:59485297-59485864:+|nuORF REV__ENST00000477081.1_1_17:59485297-59485864:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.2070007324219 2 410.207107 818.399661 NaN NaN NaN NaN NaN NaN NaN 18.477 1 15.855 15.355 16.355 -2.6215 0 0 0 0.97348 1 9734 9734 5.7604 0.52976 1 + 15826 19277 10808 11014 18952 18952 -0.016803029574589345 GGGAGRDI 8 Unmodified _GGGAGRDI_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1497192382812 2 351.680102 701.345651 0.084719 2.9794E-05 -1.0503 -0.00036938 -0.9656 -0.00033958 351.6797701284394 63.973 0.36683 63.973 63.801 64.168 0 17 14 2 0 0 0 8.7369 1 35642 35642 2.5775 0 1 867710 15827 5930 10809 11015 18953 18953 -0.01696759064827802 GGGCCCCC 8 Unmodified _GGGCCCCC_ 0 0 0 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 MSMS AL20221201_MKP_PDAC_01 4 352.8873901367188 2 353.067716 704.120878 NaN NaN NaN NaN NaN NaN NaN 16.646 1 14.089 13.589 14.589 -2.557 0 0 0 0.97444 1 8638 8638 0 0 1 + 15828 20350 10810 11016 18954 18954 -0.24301735789333634 GGGGAPPP 8 Unmodified _GGGGAPPP_ 0 0 0 ENST00000560168.1_1_19:46269581-46272089:-|nuORF;ENSG00000177045|ENST00000317578|SIX5 ENST00000560168.1_1_19:46269581-46272089:-|nuORF ENST00000560168.1_1_19:46269581-46272089:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3312377929688 1 609.299101 608.291825 0.25239 0.00015378 3.9841 0.0024275 4.2365 0.0025813 609.3016649749153 61.057 0.099136 61.057 61.024 61.123 0 5 3 2 0 0 0 8.7369 1 34047 34047 0.79363 0 1 161710 15829 8649 10811 11017 18955 18955 -0.027989314965338963 GGGGFKHP 8 Unmodified _GGGGFKHP_ 0 0 0 ENSG00000146834|ENST00000310512|MEPCE ENSG00000146834|ENST00000310512|MEPCE ENSG00000146834|ENST00000310512|MEPCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.6935729980469 2 378.693013 755.371472 1.1815 0.00044742 -0.44303 -0.00016777 0.73845 0.00027965 378.6929560698921 35.279 0.27488 31.184 31.058 31.333 -4.0951 26 16 2 0 0 0 0.80676 1 20411 20411 2.5775 0 1 13291000 15830 5801 10812 11018 18956 18956 -0.015998648225263423 GGGGGGGD 8 Unmodified _GGGGGGGD_ 0 0 0 ENSG00000184486|ENST00000328345|POU3F2;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-2|LEF1 REV__ENSG00000184156|ENST00000388996|KCNQ3;REV__ENSG00000170265|ENST00000610704|ZNF282;ENSG00000184486|ENST00000328345|POU3F2;REV__ENSG00000254726|ENST00000532414|MEX3A;REV__nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000138795|Q9UJU2-6|LEF1;REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF;REV__ENSG00000181588|ENST00000402693|MEX3D REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7506103515625 1 533.19503 532.187754 0.71007 0.00037861 -2.4442 -0.0013032 -1.7342 -0.00092464 533.194120383392 53.859 0.1254 53.859 53.82 53.945 0 7 5 2 0 0 0 8.7369 1 29884 29884 0 0 1 660880 15831 23399;16227;22463;20705;18087;9263;24528;23213 10813 11019 18957 18957 -0.09705258324038368 GGGGGGGD 8 Unmodified _GGGGGGGD_ 0 0 0 ENSG00000184486|ENST00000328345|POU3F2;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-2|LEF1 REV__ENSG00000184156|ENST00000388996|KCNQ3;REV__ENSG00000170265|ENST00000610704|ZNF282;ENSG00000184486|ENST00000328345|POU3F2;REV__ENSG00000254726|ENST00000532414|MEX3A;REV__nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000138795|Q9UJU2-6|LEF1;REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF;REV__ENSG00000181588|ENST00000402693|MEX3D REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.1948852539062 1 533.19503 532.187754 0.12027 6.4128E-05 -1.5382 -0.00082018 -1.418 -0.00075605 533.1947778916842 0.041618 0.095539 -2.4403 -2.4779 -2.3824 -2.482 48 32 2 0 0 0 0.81107 1 17 17 0 0 1 189070 15832 23399;16227;22463;20705;18087;9263;24528;23213 10813 11019 18958 18958 -0.09705258324038368 GGGGGPGLQQH 11 Unmodified _GGGGGPGLQQH_ 0 0 0 nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-3|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7333679199219 2 482.733397 963.452242 NaN NaN NaN NaN NaN NaN NaN 20.203 1 20.231 19.731 20.731 0.028357 0 0 0 0.93613 1 10218 10218 5.2969 0.76802 1 15833 9458 10814 11020 18959 18959 -0.030946285702839305 GGGGHRGGF 9 Unmodified _GGGGHRGGF_ 0 0 0 ENSG00000157240|ENST00000287934|FZD1 ENSG00000157240|ENST00000287934|FZD1 ENSG00000157240|ENST00000287934|FZD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5245361328125 2 401.191168 800.367784 NaN NaN NaN NaN NaN NaN NaN 23.956 1 23.954 23.454 24.454 -0.0016766 0 0 0 0.82396 1 12229 12229 4.756 1.8668 1 15834 6509 10815 11021 18960 18960 -0.04038534596372756 GGGGQAAA 8 Unmodified _GGGGQAAA_ 0 0 0 REV__nc|ENSG00000102882|P27361-2|MAPK3 REV__nc|ENSG00000102882|P27361-2|MAPK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7723388671875 1 588.273615 587.266338 0.28588 0.00016818 -2.0631 -0.0012136 -1.7772 -0.0010455 588.2728523413949 100.7 0.16712 100.57 100.44 100.6 -0.13293 11 6 3 0 0 0 8.7369 1 54982 54982 0 0 1 1278400 + 15835 18262 10816 11022 18961 18961 -0.04380406018958638 GGGHRGTK 8 Unmodified _GGGHRGTK_ 0 0 0 ENST00000228705.6_1_12:63328663-63328753:-|nuORF ENST00000228705.6_1_12:63328663-63328753:-|nuORF ENST00000228705.6_1_12:63328663-63328753:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5415649414062 2 385.206818 768.399084 0.59313 0.00022848 -1.0286 -0.00039624 -0.43551 -0.00016776 385.2063066929975 23.688 0.42551 20.861 20.632 21.058 -2.8273 46 25 2 0 0 0 8.7369 1 12715 12715 0.6015 0.6015 1 13393000 15836 11053 10817 11023 18962 18962 0.005620384377266419 GGGRVAFC 8 Unmodified _GGGRVAFC_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.6865844726562 2 383.686873 765.359193 NaN NaN NaN NaN NaN NaN NaN 11.231 1 11.151 10.651 11.651 -0.07938 0 0 0 0.97444 1 5465 5465 0.79363 0.79363 1 15837 1438 10818 11024 18963 18963 -0.032872245572320935 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2074584960938 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 14.216 1 14.216 13.716 14.716 0 0 0 0 0.97444 1 6741 6741 0.69038 0.088878 1 + 15838 21974 10819 11025 18964 18964 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2073669433594 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 17.462 1 17.462 16.962 17.962 0 0 0 0 0.97444 1 8605 8605 0.69038 0.088878 1 + 15839 21974 10819 11025 18965 18965 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.20751953125 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 17.635 1 17.635 17.135 18.135 0 0 0 0 0.97444 1 8705 8705 0.69038 0.088878 1 + 15840 21974 10819 11025 18966 18966 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2072448730469 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 16.861 1 16.862 16.362 17.362 0.0010548 0 0 0 0.97444 1 8344 8344 0.69038 0 1 + 15841 21974 10819 11025 18967 18967 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2076721191406 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 17.164 1 17.166 16.666 17.666 0.0010548 0 0 0 0.97444 1 8515 8515 0.69038 0.088878 1 + 15842 21974 10819 11025 18968 18968 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2077941894531 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 18.526 1 18.549 18.049 19.049 0.023106 0 0 0 0.97444 1 9295 9295 0.69038 0.088878 1 + 15843 21974 10819 11025 18969 18969 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2068786621094 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 10.039 1 10.057 9.5567 10.557 0.017581 0 0 0 0.97444 1 4971 4971 0.69038 0.088878 1 + 15844 21974 10819 11025 18970 18970 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2079772949219 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 11.821 1 11.834 11.334 12.334 0.012355 0 0 0 0.97444 1 5836 5836 0.69038 0.088878 1 + 15845 21974 10819 11025 18971 18971 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2067565917969 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 12.063 1 12.075 11.575 12.575 0.012355 0 0 0 0.97444 1 5952 5952 0.69038 0.088878 1 + 15846 21974 10819 11025 18972 18972 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2069396972656 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 13.269 1 13.279 12.779 13.779 0.0096512 0 0 0 0.97444 1 6545 6545 0.69038 0.088878 1 + 15847 21974 10819 11025 18973 18973 -0.021387115082916353 GGGVFWNV 8 Unmodified _GGGVFWNV_ 0 0 0 REV__ENSG00000165072|ENST00000377182|MAMDC2 REV__ENSG00000165072|ENST00000377182|MAMDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2073669433594 2 418.208495 834.402438 NaN NaN NaN NaN NaN NaN NaN 13.601 1 13.609 13.109 14.109 0.0073986 0 0 0 0.97444 1 6709 6709 0.69038 0.088878 1 + 15848 21974 10819 11025 18974 18974 -0.021387115082916353 GGHAPGQLPRA 11 Unmodified _GGHAPGQLPRA_ 0 0 0 REV__ENST00000428556.2_11:22647152-22647302:+|nuORF REV__ENST00000428556.2_11:22647152-22647302:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1932373046875 3 354.193068 1059.55738 -0.063052 -2.2332E-05 1.4129 0.00050045 1.3499 0.00047812 354.1935159123316 15.989 0.85343 15.994 15.662 16.515 0.0050564 116 70 3 0 0 0 0.71938 1 7892 7892 2.4348 0.15201 1 2118100 + 15849 26942 10820 11026 18975 18975 0.029979126261196143 GGHDSSDF 8 Unmodified _GGHDSSDF_ 0 0 0 ENST00000274242.9_2_5:40827335-40827488:-|nuORF ENST00000274242.9_2_5:40827335-40827488:-|nuORF ENST00000274242.9_2_5:40827335-40827488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1576538085938 2 411.156657 820.298761 NaN NaN NaN NaN NaN NaN NaN 63.412 1 63.412 62.912 63.912 0 0 0 0 0.97444 1 35371 35371 2.5775 1.7838 1 15850 11384 10821 11027 18976 18976 -0.11857663406613028 GGHFGEDA 8 Unmodified _GGHFGEDA_ 0 0 0 ENST00000515359.6_1_3:49571617-49571749:+|nuORF ENST00000515359.6_1_3:49571617-49571749:+|nuORF ENST00000515359.6_1_3:49571617-49571749:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1611633300781 2 395.161742 788.308932 0.033617 1.3284E-05 -1.0617 -0.00041955 -1.0281 -0.00040627 395.161187238234 102.39 0.25697 102.39 102.31 102.57 0 46 12 4 0 0 0 0.81107 2 56453 56453;56556 0 0 1 48500000 15851 14666 10822 11028 18977;18978 18977 -0.09369055681395366 GGHFGEDA 8 Unmodified _GGHFGEDA_ 0 0 0 ENST00000515359.6_1_3:49571617-49571749:+|nuORF ENST00000515359.6_1_3:49571617-49571749:+|nuORF ENST00000515359.6_1_3:49571617-49571749:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1612548828125 2 395.161742 788.308932 0.34855 0.00013773 -0.71448 -0.00028233 -0.36593 -0.0001446 395.16130389314776 102.47 0.20184 102.35 102.28 102.48 -0.11613 22 8 4 0 0 0 0.81107 1 55897 55897 0 0 1 5568300 15852 14666 10822 11028 18979 18979 -0.09369055681395366 GGHGMRRIRL 10 Unmodified _GGHGMRRIRL_ 0 0 0 ENSG00000182810|ENST00000332395|DDX28 ENSG00000182810|ENST00000332395|DDX28 ENSG00000182810|ENST00000332395|DDX28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.560546875 3 384.889214 1151.64581 0.86571 0.0003332 -0.31192 -0.00012005 0.55379 0.00021315 384.8888847361925 46.337 0.37066 46.303 46.139 46.51 -0.033421 57 17 4 0 0 0 0.66569 1 24882 24882 3.5871 1.0886 1 16661000 15853 9089 10823 11029 18980 18980 0.07605629664931257 GGHRFYFRLV 10 Unmodified _GGHRFYFRLV_ 0 0 0 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 MSMS AL20221201_MKP_PDAC_01 4 417.8975524902344 3 417.896363 1250.66726 NaN NaN NaN NaN NaN NaN NaN 11.98 1 9.4982 8.9982 9.9982 -2.482 0 0 0 0.99248 1 6036 6036 0.62683 0.17231 1 15854 6030 10824 11030 18981 18981 0.051953379653014053 GGIFDFSDEEE 11 Unmodified _GGIFDFSDEEE_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.7526245117188 2 622.751315 1243.48808 NaN NaN NaN NaN NaN NaN NaN 56.395 1 55.91 55.41 56.41 -0.48554 0 0 0 0.93224 1 30620 30620 5.7319 0 1 + 15855 17735;23716 10825 11031 18982 18982 -0.12392680694597402 GGITTVYAL 9 Unmodified _GGITTVYAL_ 0 0 0 REV__nc|ENSG00000180068|P47883|OR3A4P REV__nc|ENSG00000180068|P47883|OR3A4P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.4965209960938 1 894.49311 893.485833 0.042106 3.7663E-05 1.3308 0.0011904 1.3729 0.001228 894.4933561927503 74.319 0.23953 73.843 73.714 73.954 -0.47588 14 9 2 0 0 0 0.39863 1 40657 40657 12.532 0.89125 1 491780 + 15856 29820 10826 11032 18983 18983 0.03482980148885417 GGIVKIYRIL 10 Unmodified _GGIVKIYRIL_ 0 0 0 REV__nc|ENSG00000163913|Q9HBG6-11|IFT122 REV__nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8682861328125 2 566.366059 1130.71756 1.7279 0.00097861 -0.79883 -0.00045243 0.92905 0.00052618 566.3655695024364 105.37 0.09301 99.199 99.171 99.264 -6.1757 29 29 2 0 0 0 0.70951 1 70615 70615 1.8442 0.36234 1 22249000 + 15857 21833 10827 11033 18984 18984 0.15743447570457647 GGIVSRACSCR 11 Unmodified _GGIVSRACSCR_ 0 0 0 ENST00000265594.8_1_3:182812367-182817305:-|nuORF ENST00000265594.8_1_3:182812367-182817305:-|nuORF ENST00000265594.8_1_3:182812367-182817305:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 554.7727661132812 2 554.771142 1107.52773 NaN NaN NaN NaN NaN NaN NaN 39.99 1 35.461 34.961 35.961 -4.5294 0 0 0 0.76766 1 23817 23817 13.615 0.10698 1 15858 11333 10828 11034 18985 18985 -0.021731107058940324 GGKGKGRR 8 Unmodified _GGKGKGRR_ 0 0 0 ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF ENST00000426538.6_1_16:58439143-58439287:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2516479492188 2 408.25156 814.488568 0.73131 0.00029856 -0.066241 -2.7043E-05 0.66507 0.00027152 408.25145842976946 74.447 0.3875 73.971 73.794 74.182 -0.47588 28 16 2 0 0 0 0.81107 2 40703 40703;40812 0 0 1 1170600 15859 13180 10829 11035 18986;18987 18986 0.07390293117066449 GGKGKGSK 8 Unmodified _GGKGKGSK_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.1829528808594 2 359.713945 717.413337 0.84519 0.00030403 -1.4239 -0.00051221 -0.57873 -0.00020818 359.7133037467411 66.048 0.28981 66.058 65.835 66.125 0.0095596 20 14 2 0 0 0 8.7369 1 36221 36221 0 0 1 6466900 + 15860 18241 10830 11036 18988 18988 0.04332690865987843 GGKGKPGR 8 Unmodified _GGKGKPGR_ 0 0 0 ENST00000448928.7_1_12:48741727-48744993:-|nuORF;ENST00000550342.1_3_12:48741727-48744027:-|nuORF ENST00000448928.7_1_12:48741727-48744993:-|nuORF ENST00000448928.7_1_12:48741727-48744993:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.7276306152344 2 378.727387 755.44022 1.341 0.00050787 -0.91828 -0.00034778 0.42271 0.00016009 378.7270422722533 18.944 0.26673 16.323 16.205 16.471 -2.6215 24 16 2 0 0 0 0.80992 1 10011 10011 0.69038 0.69038 1 2501500 15861 13499 10831 11037 18989 18989 0.05271799477179684 GGKKVYKSLI 10 Unmodified _GGKKVYKSLI_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8974304199219 3 364.89737 1091.67028 -0.38435 -0.00014025 -0.3462 -0.00012633 -0.73054 -0.00026657 364.89721062973746 21.474 0.19973 21.474 21.381 21.58 0 66 27 3 0 0 0 0.66569 1 10836 10836 3.5871 0.85186 1 3241500 15862 4658 10832 11038 18990 18990 0.12811168299458586 GGKLRCVP 8 Unmodified _GGKLRCVP_ 0 0 0 REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.23779296875 2 415.239273 828.463992 -0.21738 -9.0265E-05 -1.0681 -0.0004435 -1.2854 -0.00053376 415.23859801511117 52.275 0.34046 52.275 52.103 52.443 0 27 14 3 0 0 0 0.80722 1 28929 28929 2.3027 1.5091 1 1997900 + 15863 29317 10833 11039 18991 18991 0.04289896919340208 GGKLRCVP 8 Unmodified _GGKLRCVP_ 0 0 0 REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 415.239273 828.463992 -0.21738 -9.0265E-05 -1.0681 -0.0004435 -1.2854 -0.00053376 415.23859801511117 52.275 0.34046 52.275 52.103 52.443 0 -0.0043553 0.00018995 NaN 2.3027 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1997900 + 15864 29317 10833 11039 0.04289896919340208 GGKLRCVP 8 Unmodified _GGKLRCVP_ 0 0 0 REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF REV__ENST00000607738.1_1_20:32251806-32252016:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 415.239273 828.463992 0.40247 0.00016712 -2.6892 -0.0011166 -2.2867 -0.00094952 415.2377139648676 52.736 0.27782 52.284 52.198 52.476 -0.45173 0.0043553 -0.0011563 NaN 2.3027 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1177400 + 15865 29317 10833 11039 0.04289896919340208 GGKLSPGV 8 Unmodified _GGKLSPGV_ 0 0 0 REV__ENST00000527897.1_1_11:64953662-64954841:+|nuORF REV__ENST00000527897.1_1_11:64953662-64954841:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7106628417969 2 357.710871 713.407189 NaN NaN NaN NaN NaN NaN NaN 31.903 1 31.933 31.433 32.433 0.030106 0 0 0 0.97444 1 16734 16734 2.0598 1.3694 1 + 15866 28402 10834 11040 18992 18992 0.0390217263446857 GGKPVPLL 8 Unmodified _GGKPVPLL_ 0 0 0 ENST00000442297.1_1_X:138529367-138529487:+|nuORF ENST00000442297.1_1_X:138529367-138529487:+|nuORF ENST00000442297.1_1_X:138529367-138529487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.7523498535156 2 390.752539 779.490525 0.52917 0.00020677 -0.18784 -7.34E-05 0.34132 0.00013337 390.7524222574517 57.224 0.2582 56.734 56.622 56.88 -0.48974 19 11 2 0 0 0 0.80624 1 31098 31098 2.8892 0.31174 1 2501200 15867 13407 10835 11041 18993 18993 0.09195909082336584 GGLEHAKKLV 10 Unmodified _GGLEHAKKLV_ 0 0 0 REV__nc|ENSG00000185339|P20062-2|TCN2 REV__nc|ENSG00000185339|P20062-2|TCN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.77734375 2 526.316566 1050.61858 -0.50075 -0.00026356 -1.7245 -0.00090763 -2.2253 -0.0011712 526.3153787488291 77.17 0.14002 76.687 76.603 76.743 -0.4826 7 5 2 0 0 0 0.23896 1 42223 42223 3.5965 0.60125 1 230230 + 15868 23495 10836 11042 18994 18994 0.09529424605557324 GGLGAIFDKS 10 Unmodified _GGLGAIFDKS_ 0 0 0 ENST00000582608.5_1_17:80403674-80404562:-|nuORF ENST00000582608.5_1_17:80403674-80404562:-|nuORF ENST00000582608.5_1_17:80403674-80404562:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.50732421875 1 964.509822 963.502546 0.12 0.00011574 0.52008 0.00050162 0.64008 0.00061736 964.5104520136645 37.752 0.28076 37.752 37.625 37.905 0 28 13 3 0 0 0 0.68719 1 20204 20204 4.3292 0.38484 1 5454100 15869 15575 10837 11043 18995 18995 0.019334810348595965 GGLGGGSVRF 10 Unmodified _GGLGGGSVRF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.7430725097656 2 453.743234 905.471915 -0.42066 -0.00019087 0.42877 0.00019455 0.0081066 3.6783E-06 453.74354827532704 41.758 0.18007 41.451 41.355 41.535 -0.30682 14 8 2 0 0 0 0.11824 1 22162 22162 43.772 10.987 1 4899200 + 15870 167 10838 11044 18996 18996 0.015397474404721834 GGLHNQHL 8 Unmodified _GGLHNQHL_ 0 0 0 REV__ENST00000375678.7_3_20:31120210-31123457:-|nuORF REV__ENST00000375678.7_3_20:31120210-31123457:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2273864746094 2 438.227751 874.440949 1.3288 0.00058233 -1.3197 -0.00057834 0.0090952 3.9858E-06 438.2271497476989 21.388 0.24071 18.653 18.504 18.745 -2.7348 39 24 2 0 0 0 0.50586 1 11428 11428 34.187 3.9625 1 5673000 + 15871 26211 10839 11045 18997 18997 -0.0012940587376988333 GGLYDQWS 8 Unmodified _GGLYDQWS_ 0 0 0 REV__ENSG00000256043|ENST00000433477|CTSO REV__ENSG00000256043|ENST00000433477|CTSO MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.404541015625 1 925.405023 924.397747 0.39049 0.00036136 0.16007 0.00014813 0.55056 0.00050949 925.4048075287109 82.318 0.48947 76.143 75.9 76.39 -6.1757 41 26 2 0 0 0 0.38465 2 54063 54063;54202 46.021 3.8716 1 11813000 + 15872 24548 10840 11046 18998;18999 18998 -0.067476404417107 GGPAAPLHL 9 Unmodified _GGPAAPLHL_ 0 0 0 ENST00000372429.7_1_9:132643135-132643285:+|nuORF ENST00000372429.7_1_9:132643135-132643285:+|nuORF ENST00000372429.7_1_9:132643135-132643285:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.8374938964844 2 416.73742 831.460287 NaN NaN NaN NaN NaN NaN NaN 82.573 1 76.397 75.897 76.897 -6.1757 0 0 0 0.38239 1 54247 54247 20.871 1.4322 1 15873 12381 10841 11047 19000 19000 0.03781550417136259 GGPAPDVV 8 Unmodified _GGPAPDVV_ 0 0 0 ENSG00000154330|ENST00000396396|PGM5;ENST00000604870.6_1_9:70993123-71019929:+|nuORF;nc|ENSG00000154330|Q15124-2|PGM5 ENSG00000154330|ENST00000396396|PGM5 ENSG00000154330|ENST00000396396|PGM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 711.367919921875 1 711.367181 710.359904 0.64545 0.00045915 -0.23369 -0.00016624 0.41175 0.00029291 711.3672696625043 93.787 0.54993 87.612 87.348 87.898 -6.1757 41 31 2 0 0 0 0.50586 1 61972 61972 34.187 2.0704 1 10685000 15874 6321 10842 11048 19001 19001 -0.006861066365217994 GGPEKTITY 9 Unmodified _GGPEKTITY_ 0 0 0 nc|ENSG00000290684|A6NFC9|OR2W5P nc|ENSG00000290684|A6NFC9|OR2W5P nc|ENSG00000290684|A6NFC9|OR2W5P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2532348632812 2 483.250557 964.486562 0.35719 0.00017261 2.7049 0.0013072 3.0621 0.0014798 483.25162650668847 38.217 0.32265 38.217 37.925 38.248 0 21 16 2 0 0 0 0.095405 1 20296 20296 34.102 5.6156 1 5373000 15875 16636 10843 11049 19002 19002 0.002897747979432097 GGPEMRMR 8 Unmodified _GGPEMRMR_ 0 0 0 ENST00000529941.1_1_11:124767484-124767703:-|nuORF ENST00000529941.1_1_11:124767484-124767703:-|nuORF ENST00000529941.1_1_11:124767484-124767703:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.4370727539062 1 933.439317 932.43204 0.99883 0.00093234 -1.9844 -0.0018523 -0.98558 -0.00091998 933.4367973642042 59.387 0.4966 53.273 53.06 53.557 -6.1147 41 26 2 0 0 0 0.61462 1 38322 38322 24.674 24.674 1 24010000 15876 14882 10844 11050 19003 19003 -0.03687838826101597 GGPFPWAFF 9 Unmodified _GGPFPWAFF_ 0 0 0 ENST00000360315.7_1_19:19616298-19616775:+|nuORF ENST00000360315.7_1_19:19616298-19616775:+|nuORF ENST00000360315.7_1_19:19616298-19616775:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2479858398438 2 513.247621 1024.48069 0.21548 0.00011059 2.2506 0.0011551 2.466 0.0012657 513.2484279341454 64.185 0.30161 64.185 64.022 64.324 0 21 12 3 0 0 0 0.3554 1 35774 35774 14.582 3.7578 1 1166100 15877 12163 10845 11051 19004 19004 -0.030572789230518538 GGPLALDIP 9 Unmodified _GGPLALDIP_ 0 0 0 nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B nc|ENSG00000133454|Q8IUG5-2|MYO18B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.48291015625 1 852.482545 851.475269 0.33185 0.0002829 0.99951 0.00085207 1.3314 0.001135 852.4832189145288 60.778 0.28198 60.778 60.603 60.885 0 18 11 2 0 0 0 0.25297 1 33871 33871 19.439 1.304 1 917950 15878 4516 10846 11052 19005 19005 0.04358997494466621 GGPLKGGGL 9 Unmodified _GGPLKGGGL_ 0 0 0 REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF REV__ENST00000439473.5_1_7:102916053-102920599:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2259521484375 2 378.224146 754.433738 2.0598 0.00077907 0.47621 0.00018011 2.536 0.00095918 378.22421933579255 108.15 2.906 101.98 100.29 103.2 -6.1757 775 534 2 0 0 0 0.62242 4 71362 71362;72299;72548;72802 0 0 1 11528000 + 15879 25429 10847 11053 19006;19007;19008;19009 19006 0.04669861525826491 GGPLYGDG 8 Unmodified _GGPLYGDG_ 0 0 0 ENSG00000277363|ENST00000617146|SRCIN1;nc|ENSG00000277363|Q9C0H9-2|SRCIN1 ENSG00000277363|ENST00000617146|SRCIN1 ENSG00000277363|ENST00000617146|SRCIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1685180664062 2 368.169036 734.323519 -0.35194 -0.00012957 0.42152 0.00015519 0.069584 2.5619E-05 368.16899536556497 48.358 0.23964 48.358 48.272 48.511 0 16 11 2 0 0 0 0.65867 1 26535 26535 20.871 6.2895 1 1363100 15880 10922 10848 11054 19010 19010 -0.054269835332320326 GGPPGSVAY 9 Unmodified _GGPPGSVAY_ 0 0 0 REV__ENST00000374316.9_1_6:33627256-33630354:+|nuORF REV__ENST00000374316.9_1_6:33627256-33630354:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.6983032226562 2 402.697961 803.381368 -0.42561 -0.00017139 -0.23156 -9.3248E-05 -0.65717 -0.00026464 402.69771640912364 24.259 0.26709 24.259 24.119 24.386 0 30 17 2 0 0 0 0.39863 1 12350 12350 12.532 0 1 3354200 + 15881 26177 10849 11055 19011 19011 -0.02818721607820862 GGPRCPGK 8 Unmodified _GGPRCPGK_ 0 0 0 REV__ENSG00000161850|ENST00000257974|KRT82 REV__ENSG00000161850|ENST00000257974|KRT82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.1999816894531 2 386.200148 770.385742 1.9295 0.00074518 -2.0235 -0.00078149 -0.094016 -3.6309E-05 386.1991370161215 94.434 0.35284 94.448 94.266 94.618 0.014244 19 12 2 0 0 0 0.80992 1 52485 52485 0.69038 0 1 1698800 + + 15882 16890 10850 11056 19012 19012 -0.008635356658942328 GGPRCPGK 8 Unmodified _GGPRCPGK_ 0 0 0 REV__ENSG00000161850|ENST00000257974|KRT82 REV__ENSG00000161850|ENST00000257974|KRT82 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 386.200148 770.385742 0.046191 1.7839E-05 -1.5666 -0.00060502 -1.5204 -0.00058718 386.1996003920911 94.507 0.31171 94.507 94.349 94.661 0 0.029545 0.00011226 NaN 0.69038 46 25 3 NaN NaN NaN NaN 0 NaN NaN 0 316730 + + 15883 16890 10850 11056 -0.008635356658942328 GGPRCPGK 8 Unmodified _GGPRCPGK_ 0 0 0 REV__ENSG00000161850|ENST00000257974|KRT82 REV__ENSG00000161850|ENST00000257974|KRT82 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 386.200148 770.385742 1.9295 0.00074518 -2.0235 -0.00078149 -0.094016 -3.6309E-05 386.1991370161215 94.434 0.35284 94.448 94.266 94.618 0.014244 -0.029545 -0.00024067 NaN 0.69038 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1698800 + + 15884 16890 10850 11056 -0.008635356658942328 GGPRRHPAY 9 Unmodified _GGPRRHPAY_ 0 0 0 ENST00000471850.1_1_3:119298364-119306722:+|nuORF;ENST00000478927.5_1_3:119298448-119301006:+|nuORF;ENST00000481816.5_3_3:119298289-119299348:+|nuORF;ENST00000478399.5_1_3:119298211-119298877:+|nuORF ENST00000471850.1_1_3:119298364-119306722:+|nuORF ENST00000471850.1_1_3:119298364-119306722:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2646484375 2 505.767575 1009.5206 1.1184 0.00056564 0.28871 0.00014602 1.4071 0.00071166 505.76790274099574 86.211 0.50566 80.035 79.76 80.266 -6.1757 36 25 2 0 0 0 0.39863 1 56918 56918 12.532 0 1 9120700 15885 13888 10851 11057 19013 19013 0.016216608002196153 GGPSAPGPPPV 11 Unmodified _GGPSAPGPPPV_ 0 0 0 REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.489013671875 1 932.483608 931.476331 0.65384 0.0006097 0.20758 0.00019357 0.86142 0.00080326 932.4841354439443 50.744 0.26791 50.33 50.17 50.438 -0.41351 28 12 3 0 0 0 0.68427 1 27332 27332 5.7319 0.50118 1 3632600 + 15886 28445 10852 11058 19014 19014 0.007852118633763894 GGPSAPGPPPV 11 Unmodified _GGPSAPGPPPV_ 0 0 0 REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF REV__ENST00000531236.1_1_11:71192815-71195619:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7461547851562 2 466.745442 931.476331 0.64619 0.0003016 -0.045941 -2.1443E-05 0.60024 0.00028016 466.74538698008047 50.727 0.40552 50.314 50.112 50.518 -0.41351 53 19 4 0 0 0 0.56638 1 27418 27418 13.042 4.4492 1 17162000 + 15887 28445 10852 11058 19015 19015 0.007852118633763894 GGPVCGNLF 9 Unmodified _GGPVCGNLF_ 0 0 0 nc|ENSG00000151651|P78325-3|ADAM8;ENSG00000151651|ENST00000445355|ADAM8;nc|ENSG00000151651|P78325-2|ADAM8 nc|ENSG00000151651|P78325-3|ADAM8;nc|ENSG00000151651|P78325-2|ADAM8 nc|ENSG00000151651|P78325-3|ADAM8 MSMS AL20221201_MKP_PDAC_01 4 432.2061767578125 2 432.207638 862.400723 NaN NaN NaN NaN NaN NaN NaN 60.6 1 54.452 53.952 54.952 -6.1478 0 0 0 0.20498 1 38998 38998 30.225 1.738 1 15888 6131;16274 10853 11059 19016 19016 -0.035980885885464886 GGQGGAGH 8 Unmodified _GGQGGAGH_ 0 0 0 REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.2766723632812 1 640.279763 639.272486 1.3904 0.00089022 -3.4345 -0.002199 -2.0441 -0.0013088 640.2748743093964 107.24 0.23941 101.06 100.97 101.21 -6.1757 76 38 3 0 0 0 0.81107 1 71785 71785 0 0 1 5084600 + 15889 27405 10854 11060 19017 19017 -0.06157887787446725 GGQGGLLL 8 Unmodified _GGQGGLLL_ 0 0 0 REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7121887207031 2 357.710871 713.407189 NaN NaN NaN NaN NaN NaN NaN 26.426 1 26.453 25.953 26.953 0.026951 0 0 0 0.97444 1 13707 13707 2.8892 0.58649 1 + 15890 18288 10855 11061 19018 19018 0.0390217263446857 GGRFGLGG 8 Unmodified _GGRFGLGG_ 0 0 0 REV__ENST00000590416.1_1_19:34712331-34717333:+|nuORF REV__ENST00000590416.1_1_19:34712331-34717333:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.0250854492188 2 360.693013 719.371472 NaN NaN NaN NaN NaN NaN NaN 20.598 1 20.626 20.126 21.126 0.028357 0 0 0 0.97348 1 10430 10430 5.7604 0 1 + 15891 24561 10856 11062 19019 19019 0.0005613517747633523 GGRKGPCL 8 Unmodified _GGRKGPCL_ 0 0 0 ENST00000564068.1_1_15:75628478-75628964:+|nuORF ENST00000564068.1_1_15:75628478-75628964:+|nuORF ENST00000564068.1_1_15:75628478-75628964:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2154235839844 2 394.215798 786.417042 0.16305 6.4278E-05 -0.71462 -0.00028172 -0.55157 -0.00021744 394.2154322052728 49.066 0.28831 49.022 48.887 49.175 -0.04369 24 13 3 0 0 0 0.80975 1 26514 26514 0.79363 0 1 1626500 15892 15375 10857 11063 19020 19020 0.015290373681864367 GGRRLRLWL 9 Unmodified _GGRRLRLWL_ 0 0 0 REV__ENSG00000137070|ENST00000441545|IL11RA REV__ENSG00000137070|ENST00000441545|IL11RA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2375793457031 3 376.23672 1125.68833 NaN NaN NaN NaN NaN NaN NaN 85.277 1 84.776 84.276 85.276 -0.5015 0 0 0 0.86004 1 46659 46659 0.26902 0 1 + 15893 20207 10858 11064 19021 19021 0.13051348064846024 GGRTSSLLLLP 11 Unmodified _GGRTSSLLLLP_ 0 0 0 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 MSMS AL20221201_MKP_PDAC_01 4 371.8912963867188 3 371.892396 1112.65536 NaN NaN NaN NaN NaN NaN NaN 21.952 1 19.217 18.717 19.717 -2.7348 0 0 0 0.93984 1 11790 11790 2.6312 0.97861 1 15894 16129 10859 11065 19022 19022 0.1035367643146401 GGSALNGAFYL 11 Unmodified _GGSALNGAFYL_ 0 0 0 REV__ENSG00000005022|ENST00000317881|SLC25A5 REV__ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2676391601562 2 535.269281 1068.52401 0.93493 0.00050044 -0.58577 -0.00031354 0.34916 0.0001869 535.2687706045542 79.78 0.44518 79.291 79.008 79.454 -0.48932 29 19 2 0 0 0 0.63851 1 43608 43608 9.3831 0.63772 1 1251900 + 15895 16961 10860 11066 19023 19023 -0.007511339364327796 GGSFTQKSHLF 11 Unmodified _GGSFTQKSHLF_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.0486755371094 3 403.540134 1207.59857 0.88436 0.00035687 -0.058964 -2.3794E-05 0.8254 0.00033308 403.54003895043445 18.704 0.26511 16.082 15.874 16.139 -2.6215 48 27 2 0 0 0 0.30551 1 9898 9898 2.6312 1.8547 1 3428600 15896 2330 10861 11067 19024 19024 0.003076288749525702 GGSGARIFGN 10 Unmodified _GGSGARIFGN_ 0 0 0 ENSG00000169914|ENST00000375120|OTUD3 ENSG00000169914|ENST00000375120|OTUD3 ENSG00000169914|ENST00000375120|OTUD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7410888671875 2 468.238316 934.462078 0.13647 6.3902E-05 0.3378 0.00015817 0.47427 0.00022207 468.2380859458706 24.788 0.16269 24.786 24.688 24.851 -0.0016766 10 6 2 0 0 0 0.52097 1 12676 12676 15.248 0.66679 1 2169700 15897 7927 10862 11068 19025 19025 -0.007774405649115579 GGSGDVDD 8 Unmodified _GGSGDVDD_ 0 0 0 ENSG00000102401|ENST00000471229|ARMCX3 ENSG00000102401|ENST00000471229|ARMCX3 ENSG00000102401|ENST00000471229|ARMCX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1385192871094 2 361.13539 720.256227 -0.6531 -0.00023586 4.0906 0.0014773 3.4375 0.0012414 361.1387833283591 55.684 0.56644 55.684 55.461 56.028 0 213 43 6 0 0 0 0.72953 2 30862 30862;31087 14.582 0 1 111100000 15898 2044 10863 11069 19026;19027 19026 -0.11509058534841188 GGTAAEFHEY 10 Unmodified _GGTAAEFHEY_ 0 0 0 REV__ENST00000568165.1_1_16:67213636-67213985:-|nuORF REV__ENST00000568165.1_1_16:67213636-67213985:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2344360351562 2 541.232896 1080.45124 -0.45605 -0.00024683 -0.26063 -0.00014106 -0.71667 -0.00038789 541.2335635829306 34.486 0.36683 34.486 34.289 34.656 0 37 18 3 0 0 0 0.46514 1 18143 18143 18.146 3.3081 1 6962100 + 15899 23791 10864 11070 19028 19028 -0.08576887729850569 GGTAKLKI 8 Unmodified _GGTAKLKI_ 0 0 0 REV__ENST00000522861.1_1_8:53038570-53045696:-|nuORF REV__ENST00000522861.1_1_8:53038570-53045696:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2560729980469 2 394.255446 786.496338 NaN NaN NaN NaN NaN NaN NaN 54.055 1 53.988 53.488 54.488 -0.066936 0 0 0 0.97444 1 29347 29347 2.3027 1.5091 1 + 15900 20894 10865 11071 19029 19029 0.09455007593976461 GGTMKRHSSR 10 Unmodified _GGTMKRHSSR_ 0 0 0 nc|ENSG00000130475|O14526-3|FCHO1;nc|ENSG00000130475|O14526-2|FCHO1;ENSG00000130475|ENST00000596536|FCHO1 nc|ENSG00000130475|O14526-3|FCHO1 nc|ENSG00000130475|O14526-3|FCHO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8616027832031 3 372.861213 1115.56181 1.5631 0.00058281 0.25819 9.6268E-05 1.8213 0.00067907 372.8611059001223 19.49 0.54782 16.833 16.495 17.043 -2.6564 155 46 5 0 0 0 0.67008 2 10249 10249;10356 6.2344 0.93747 1 151460000 15901 4214 10866 11072 19030;19031 19030 0.008650537773974065 GGVEAEWV 8 Unmodified _GGVEAEWV_ 0 0 0 REV__AluSx_dup105968|chr19:17814932-17815230:+|2.586910909860221|0.3124682729523712|3.05|178.0|1|1|sense REV__AluSx_dup105968|chr19:17814932-17815230:+|2.586910909860221|0.3124682729523712|3.05|178.0|1|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 846.3991088867188 1 846.399209 845.391933 0.062646 5.3023E-05 0.3713 0.00031427 0.43394 0.00036729 846.3994533009628 75.748 0.35294 75.271 75.104 75.457 -0.47714 27 15 2 0 0 0 0.44122 1 41518 41518 40.449 40.449 1 2449900 + 15902 16717 10867 11073 19032 19032 -0.036947389533793284 GGVEAEWV 8 Unmodified _GGVEAEWV_ 0 0 0 REV__AluSx_dup105968|chr19:17814932-17815230:+|2.586910909860221|0.3124682729523712|3.05|178.0|1|1|sense REV__AluSx_dup105968|chr19:17814932-17815230:+|2.586910909860221|0.3124682729523712|3.05|178.0|1|1|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 846.399209 845.391933 0.08651 7.3222E-05 1.0262 0.00086858 1.1127 0.00094181 846.4001386062815 75.264 0.21273 75.264 75.157 75.369 0 -0.0033407 0.00037859 NaN 40.449 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 522370 + 15903 16717 10867 11073 -0.036947389533793284 GGVHGFKN 8 Unmodified _GGVHGFKN_ 0 0 0 REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF REV__ENST00000339024.8_2_21:30464771-30503236:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2122192382812 2 408.211569 814.408586 0.40126 0.0001638 1.454 0.00059356 1.8553 0.00075736 408.2121597304809 47.858 0.16996 47.858 47.789 47.959 0 10 7 2 0 0 0 0.80624 1 26247 26247 2.8892 0 1 1013400 + 15904 25678 10868 11074 19033 19033 -0.006041932767743674 GGVLILIHRY 10 Unmodified _GGVLILIHRY_ 0 0 0 ENST00000538954.5_1_9:124116937-124118409:-|nuORF ENST00000538954.5_1_9:124116937-124118409:-|nuORF ENST00000538954.5_1_9:124116937-124118409:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 570.8473510742188 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 104.59 1 98.419 97.919 98.919 -6.1757 0 0 0 0.98914 1 70036 70036 1.8442 0.6509 1 15905 15012 10869 11075 19034 19034 0.11725990393620123 GGYGSGQS 8 Unmodified _GGYGSGQS_ 0 0 0 REV__ENST00000411857.2_1_1:179425361-179425934:-|nuORF REV__ENST00000411857.2_1_1:179425361-179425934:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.3960571289062 2 356.648468 711.282382 -0.47384 -0.000169 -2.2806 -0.00081338 -2.7545 -0.00098237 356.6482057911205 33.578 0.16437 33.578 33.544 33.709 0 16 13 2 0 0 0 0.80975 1 17613 17613 0.79363 0 1 6174600 + 15906 26717 10870 11076 19035 19035 -0.08480744572705134 GGYGSGQS 8 Unmodified _GGYGSGQS_ 0 0 0 REV__ENST00000411857.2_1_1:179425361-179425934:-|nuORF REV__ENST00000411857.2_1_1:179425361-179425934:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1463623046875 2 356.648468 711.282382 -0.47384 -0.000169 -2.2806 -0.00081338 -2.7545 -0.00098237 356.6482057911205 33.578 0.16437 33.578 33.544 33.709 0 16 13 2 0 0 0 8.7369 1 17677 17677 0 0 1 6174600 + 15907 26717 10870 11076 19036 19036 -0.08480744572705134 GGYSPCPM 8 Unmodified _GGYSPCPM_ 0 0 0 nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1581115722656 2 406.159299 810.304046 NaN NaN NaN NaN NaN NaN NaN 46.026 1 46.026 45.526 46.526 0 0 0 0 0.97444 1 25133 25133 0.79363 0 1 15908 5222 10871 11077 19037 19037 -0.10869399140005953 GGYVYTTGR 9 Unmodified _GGYVYTTGR_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF ENSG00000178252|ENST00000608424|WDR6 ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.240478515625 2 487.240524 972.466495 0.15352 7.4803E-05 0.58202 0.00028359 0.73555 0.00035839 487.24080694022103 30.205 0.20849 30.235 30.114 30.323 0.030106 11 8 2 0 0 0 0.54444 1 15812 15812 4.756 2.1785 1 453980 15909 8740 10872 11078 19038 19038 -0.020839761420006653 GHAAADRF 8 Unmodified _GHAAADRF_ 0 0 0 nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11 nc|ENSG00000073670|O75078-2|ADAM11 nc|ENSG00000073670|O75078-2|ADAM11 MSMS AL20221201_MKP_PDAC_01 4 422.7045593261719 2 422.706651 843.39875 NaN NaN NaN NaN NaN NaN NaN 44.7 1 39.848 39.348 40.348 -4.852 0 0 0 0.93587 1 27319 27319 13.508 2.3934 1 15910 1110 10873 11079 19039 19039 -0.029213812821581087 GHAIKPPF 8 Unmodified _GHAIKPPF_ 0 0 0 REV__CD55-C4BPA|1|fusion REV__CD55-C4BPA|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7474975585938 2 433.747788 865.481023 0.30909 0.00013407 0.14127 6.1277E-05 0.45037 0.00019535 433.7477880920906 41.133 0.71161 41.132 40.711 41.422 -0.0017891 94 34 3 0 0 0 0.41521 1 21779 21779 42.968 8.7807 1 18456000 + 15911 16758 10874 11080 19040 19040 0.04290140796797459 GHALKPQV 8 Unmodified _GHALKPQV_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.7540283203125 2 425.250695 848.486836 0.26711 0.00011359 2.894 0.0012307 3.1611 0.0013443 425.2513374344176 39.117 0.23739 39.129 39.021 39.259 0.011456 18 10 2 0 0 0 0.80143 1 20828 20828 5.7604 0.52976 1 1045500 15912 510 10875 11081 19041 19041 0.05653239308469438 GHCFAPSV 8 Unmodified _GHCFAPSV_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MSMS AL20221201_MKP_PDAC_01 4 409.1856384277344 2 409.186706 816.358859 NaN NaN NaN NaN NaN NaN NaN 78.711 1 72.535 72.035 73.035 -6.1757 0 0 0 0.97444 1 51539 51539 5.2307 0 1 15913 9204 10876 11082 19042 19042 -0.05666644277073374 GHCFVKLNKL 10 Unmodified _GHCFVKLNKL_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.5294494628906 3 386.886588 1157.63793 0.035655 1.3794E-05 -1.039 -0.00040196 -1.0033 -0.00038817 386.8860146616768 38.186 0.32455 37.914 37.739 38.064 -0.27133 38 14 4 0 0 0 0.23566 1 20010 20010 0.69767 0 1 11034000 15914 10135 10877 11083 19043 19043 0.06542057624824338 GHDDQEIKKF 10 Unmodified _GHDDQEIKKF_ 0 0 0 ENSG00000269964|ENST00000684080|MEI4 ENSG00000269964|ENST00000684080|MEI4 ENSG00000269964|ENST00000684080|MEI4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2030944824219 3 406.20341 1215.5884 0.049375 2.0056E-05 -0.85119 -0.00034576 -0.80181 -0.0003257 406.2030526138285 61.738 0.27614 61.705 61.572 61.848 -0.032787 28 13 3 0 0 0 0.69626 1 33716 33716 3.3196 0.24738 1 4897800 15915 10882 10878 11084 19044 19044 -0.010769788503012023 GHDLSDTVQA 10 Unmodified _GHDLSDTVQA_ 0 0 0 nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;ENST00000443945.6_1_13:47127426-47279607:+|nuORF nc|ENSG00000136141|Q9Y2L9-2|LRCH1 nc|ENSG00000136141|Q9Y2L9-2|LRCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2144165039062 2 521.743628 1041.4727 -0.033408 -1.743E-05 2.4026 0.0012535 2.3692 0.0012361 521.7456283992151 44.701 0.2761 44.701 44.532 44.808 0 35 14 3 0 0 0 0.57893 1 24322 24322 12.241 2.8932 1 24404000 15916 4790 10879 11085 19045 19045 -0.04637502701143603 GHEVCNYFWN 10 Unmodified _GHEVCNYFWN_ 0 0 0 nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.510986328125 3 423.509957 1267.50804 0.37531 0.00015895 0.45731 0.00019367 0.83262 0.00035262 423.51069329746093 95.581 0.20081 95.213 95.137 95.338 -0.36814 24 11 3 0 0 0 0.72247 1 52228 52228 0.13989 0.056541 1 465820 15917 16129 10880 11086 19046 19046 -0.11501163444972917 GHEYNPSLFE 10 Unmodified _GHEYNPSLFE_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1800537109375 3 398.180494 1191.51965 -0.4771 -0.00018997 -0.73235 -0.00029161 -1.2094 -0.00048158 398.1801545928423 29.572 0.25125 29.572 29.451 29.702 0 42 16 3 0 0 0 0.65282 1 15305 15305 7.4771 3.6007 1 32576000 + 15918 18680 10881 11087 19047 19047 -0.06844643150020602 GHEYNPSLFE 10 Unmodified _GHEYNPSLFE_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 398.180494 1191.51965 -0.4771 -0.00018997 -0.73235 -0.00029161 -1.2094 -0.00048158 398.1801545928423 29.572 0.25125 29.572 29.451 29.702 0 0.044974 -1.1947E-05 NaN 7.4771 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 32576000 + 15919 18680 10881 11087 -0.06844643150020602 GHEYNPSLFE 10 Unmodified _GHEYNPSLFE_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 398.180494 1191.51965 0.6667 0.00026547 -0.61264 -0.00024394 0.054056 2.1524E-05 398.5143714030138 29.563 0.13537 29.482 29.44 29.575 -0.080431 -0.044974 0.00013104 NaN 7.4771 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3244200 + 15920 18680 10881 11087 -0.06844643150020602 GHFDYTMI 8 Unmodified _GHFDYTMI_ 0 0 0 REV__ENSG00000133048|ENST00000255409|CHI3L1 REV__ENSG00000133048|ENST00000255409|CHI3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2166137695312 2 492.218203 982.421853 0.16538 8.1401E-05 -1.4378 -0.0007077 -1.2724 -0.0006263 492.216820917504 81.593 0.32104 81.593 81.394 81.715 0 44 16 4 0 0 0 0.80676 1 45228 45228 2.5775 0 1 1037400 + 15921 19901 10882 11088 19048 19048 -0.07006123279700205 GHFTGLKI 8 Unmodified _GHFTGLKI_ 0 0 0 REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 436.7549133300781 2 436.75307 871.491587 NaN NaN NaN NaN NaN NaN NaN 16.975 1 14.389 13.889 14.889 -2.5866 0 0 0 0.92452 1 8836 8836 15.847 0 1 + 15922 17931 10883 11089 19049 19049 0.05070123451230302 GHFVSPGHLA 10 Unmodified _GHFVSPGHLA_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|104|1|anti-sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|104|1|anti-sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|104|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.5966186523438 2 511.264333 1020.51411 NaN NaN NaN NaN NaN NaN NaN 23.953 1 23.975 23.475 24.475 0.021185 0 0 0 0.99091 1 12347 12347 1.6526 0.85899 1 15923 15912 10884 11090 19050 19050 0.004677228488503715 GHGGYKML 8 Unmodified _GHGGYKML_ 0 0 0 REV__ENSG00000165983|ENST00000535784|PTER REV__ENSG00000165983|ENST00000535784|PTER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7159118652344 2 431.71563 861.416708 0.78143 0.00033736 0.59876 0.00025849 1.3802 0.00059585 431.715747414026 47.528 0.19881 47.489 47.319 47.518 -0.038643 13 8 2 0 0 0 0.80143 1 25603 25603 5.7604 1.0044 1 1363000 + 15924 22072 10885 11091 19051 19051 -0.019543823516414704 GHGLSTAS 8 Unmodified _GHGLSTAS_ 0 0 0 REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1798400878906 2 365.179935 728.345317 NaN NaN NaN NaN NaN NaN NaN 67.788 1 67.788 67.288 68.288 0 0 0 0 0.97444 1 37798 37798 2.8892 0.31174 1 + 15925 28711 10886 11092 19052 19052 -0.029721787846710868 GHGMIHDISF 10 Unmodified _GHGMIHDISF_ 0 0 0 REV__ENSG00000186564|ENST00000334793|FOXD2 REV__ENSG00000186564|ENST00000334793|FOXD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2652587890625 2 557.260933 1112.50731 0.71624 0.00039913 -2.9544 -0.0016464 -2.2382 -0.0012473 557.2613369154506 38.972 0.47223 38.972 38.79 39.263 0 35 21 3 0 0 0 0.60623 1 20982 20982 10.824 0.75 1 1952000 + 15926 23581 10887 11093 19053 19053 -0.0444395809404341 GHHPGILG 8 Unmodified _GHHPGILG_ 0 0 0 ENST00000526579.5_1_11:130748389-130775881:-|nuORF ENST00000526579.5_1_11:130748389-130775881:-|nuORF ENST00000526579.5_1_11:130748389-130775881:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2146911621094 2 394.214112 786.413671 -0.017198 -6.7798E-06 1.4511 0.00057204 1.4339 0.00056526 394.21483785701975 39.943 0.55582 39.943 39.72 40.276 0 73 27 4 0 0 0 0.80975 1 21467 21467 0.79363 0 1 9544100 15927 14820 10888 11094 19054 19054 0.01192110585861883 GHHRTHSQVP 10 Unmodified _GHHRTHSQVP_ 0 0 0 ENST00000397150.5_1_20:35929770-35944815:+|nuORF ENST00000397150.5_1_20:35929770-35944815:+|nuORF ENST00000397150.5_1_20:35929770-35944815:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8639831542969 3 385.863722 1154.56934 NaN NaN NaN NaN NaN NaN NaN 14.515 1 14.484 13.984 14.984 -0.030868 0 0 0 1.0004 1 7068 7068 0.62683 0.39098 1 15928 12817 10889 11095 19055 19055 -0.0017647063066306146 GHHVGHFDPA 10 Unmodified _GHHVGHFDPA_ 0 0 0 REV__ENSG00000146555|ENST00000404826|SDK1 REV__ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2490234375 2 537.249215 1072.48388 0.17967 9.6526E-05 -1.142 -0.00061356 -0.96238 -0.00051704 537.2485167558316 28.237 0.21321 28.267 28.188 28.401 0.029564 11 8 2 0 0 0 0.69064 1 14736 14736 3.9444 0 1 1139600 + 15929 20841 10890 11096 19056 19056 -0.04946635816327216 GHIKFGCI 8 Unmodified _GHIKFGCI_ 0 0 0 REV__nc|ENSG00000171603|O94985-2|CLSTN1 REV__nc|ENSG00000171603|O94985-2|CLSTN1 MSMS AL20221201_MKP_PDAC_01 4 437.734619140625 2 437.733823 873.453093 NaN NaN NaN NaN NaN NaN NaN 32.198 1 28.342 27.842 28.842 -3.8562 0 0 0 0.85111 1 18316 18316 20.871 3.9289 1 + 15930 22581 10891 11097 19057 19057 0.011304945450547166 GHKVHISRD 9 Unmodified _GHKVHISRD_ 0 0 0 ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1945495605469 3 350.193068 1047.55738 1.3452 0.0004711 0.60243 0.00021097 1.9477 0.00068206 350.19328173800864 49.121 0.40809 43.725 43.475 43.883 -5.3961 32 27 2 0 0 0 0.28047 1 30604 30604 12.241 2.0901 1 73537000 15931 1560 10892 11098 19058 19058 0.03549912626135665 GHKVSQMAQY 10 Unmodified _GHKVSQMAQY_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7805786132812 2 574.77949 1147.54443 0.59002 0.00033913 0.44069 0.0002533 1.0307 0.00059243 574.7796851426835 22.499 0.29107 19.72 19.537 19.828 -2.7784 32 15 3 0 0 0 0.59286 1 12053 12053 13.042 3.695 1 5631100 15932 4898 10893 11099 19059 19059 -0.023442865482820707 GHLIVRFLF 9 Unmodified _GHLIVRFLF_ 0 0 0 ENST00000467513.5_2_7:140178035-140178113:-|nuORF ENST00000467513.5_2_7:140178035-140178113:-|nuORF ENST00000467513.5_2_7:140178035-140178113:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.8892822265625 3 367.890438 1100.64948 NaN NaN NaN NaN NaN NaN NaN 26.16 1 23.209 22.709 23.709 -2.9511 0 0 0 0.6032 1 14385 14385 8.1555 0 1 15933 13781 10894 11100 19060 19060 0.10318622710451564 GHLLTRAPR 9 Unmodified _GHLLTRAPR_ 0 0 0 REV__ENSG00000156469|ENST00000287025|MTERF3 REV__ENSG00000156469|ENST00000287025|MTERF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8065185546875 2 510.8067 1019.59885 NaN NaN NaN NaN NaN NaN NaN 87.842 1 87.896 87.396 88.396 0.053352 0 0 0 0.41346 1 48860 48860 19.257 5.7491 1 + 15934 21332 10895 11101 19061 19061 0.08983093385461416 GHLREGNMM 9 Unmodified _GHLREGNMM_ 0 0 0 REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF REV__ENST00000338086.9_1_2:20512115-20518378:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.27734375 2 522.739311 1043.46407 1.5485 0.00080945 0.73936 0.00038649 2.2878 0.0011959 522.7395251253372 58.869 0.42799 52.795 52.565 52.993 -6.0745 32 23 3 0 0 0 0.19613 1 37811 37811 7.9102 0 1 10887000 + 15935 25669 10896 11102 19062 19062 -0.055924711429724994 GHLRTFECAV 10 Unmodified _GHLRTFECAV_ 0 0 0 REV__ENSG00000185105|ENST00000409745|MYADML2 REV__ENSG00000185105|ENST00000409745|MYADML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7825317382812 2 566.782033 1131.54951 0.53679 0.00030424 -0.55554 -0.00031487 -0.018742 -1.0623E-05 566.7815953757937 96.615 0.31335 96.31 96.16 96.473 -0.30472 43 17 3 0 0 0 0.71981 1 52825 52825 0.40072 0 1 1322200 + 15936 23473 10897 11103 19063 19063 -0.010999826856732398 GHLRTHTG 8 Unmodified _GHLRTHTG_ 0 0 0 ENSG00000171970|ENST00000306908|ZNF57 ENSG00000171970|ENST00000306908|ZNF57 ENSG00000171970|ENST00000306908|ZNF57 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2327880859375 2 439.7332 877.451848 0.08171 3.5931E-05 1.257 0.00055275 1.3387 0.00058869 439.73360456715835 53.928 0.31535 53.861 53.765 54.081 -0.066936 23 15 2 0 0 0 8.7369 1 29283 29283 10.824 0 1 2536300 15937 8168 10898 11104 19064 19064 0.008219965005082486 GHLYPGEVCP 10 Unmodified _GHLYPGEVCP_ 0 0 0 ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR ENSG00000171105|ENST00000302850|INSR ENSG00000171105|ENST00000302850|INSR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7238159179688 2 536.250034 1070.48552 -0.29961 -0.00016067 0.21603 0.00011585 -0.083579 -4.4819E-05 536.2517882772652 29.704 0.060564 29.704 29.662 29.722 0 6 2 3 0 0 0 0.22327 1 15391 15391 12.532 0 1 570000 15938 8062 10899 11105 19065 19065 -0.04690762842596996 GHNGETRIYHI 11 Unmodified _GHNGETRIYHI_ 0 0 0 REV__nc|ENSG00000002746|Q76N89-2|HECW1 REV__nc|ENSG00000002746|Q76N89-2|HECW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.885009765625 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 24.18 1 24.18 23.68 24.68 0 0 0 0 0.94287 1 12347 12347 0.45452 0.21867 1 + 15939 16936 10900 11106 19066 19066 0.0010893450946696248 GHNGWVTQI 9 Unmodified _GHNGWVTQI_ 0 0 0 ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000503170.1_1_5:180669321-180670896:-|nuORF ENST00000503170.1_1_5:180669321-180670896:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2538452148438 2 506.253966 1010.49338 0.15495 7.8445E-05 -0.03695 -1.8706E-05 0.118 5.9739E-05 506.25391962346424 46.391 0.21063 46.054 45.939 46.149 -0.33664 23 10 3 0 0 0 0.009483 1 24808 24808 81.89 35.869 1 9194700 15940 10312 10901 11107 19067 19067 -0.011448675307974554 GHNGWVTQI 9 Unmodified _GHNGWVTQI_ 0 0 0 ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000503170.1_1_5:180669321-180670896:-|nuORF ENST00000503170.1_1_5:180669321-180670896:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2545776367188 2 506.253966 1010.49338 0.94342 0.00047761 0.01396 7.0672E-06 0.95738 0.00048468 506.2537471537356 51.052 0.39028 45.403 45.232 45.622 -5.649 55 23 3 0 0 0 0.0090948 2 32180 32049;32180 85.272 35.339 1 59204000 15941 10312 10901 11107 19068;19069 19069 -0.011448675307974554 GHNGWVTQI 9 Unmodified _GHNGWVTQI_ 0 0 0 ENST00000503170.1_1_5:180669321-180670896:-|nuORF;ENST00000514318.1_1_5:180670199-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENSG00000204628|ENST00000512805|RACK1 ENST00000503170.1_1_5:180669321-180670896:-|nuORF ENST00000503170.1_1_5:180669321-180670896:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.253966 1010.49338 1.1067 0.00056029 0.49837 0.0002523 1.6051 0.00081259 506.25416909348365 46.155 0.31868 46.155 45.994 46.313 0 0.050177 0.00036596 NaN 81.89 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2326900 15942 10312 10901 11107 -0.011448675307974554 GHPLAKGYLPL 11 Unmodified _GHPLAKGYLPL_ 0 0 0 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2299194335938 3 389.229119 1164.66553 1.1234 0.00043725 0.22213 8.6461E-05 1.3455 0.00052371 389.2292014814719 49.939 0.28388 49.89 49.743 50.027 -0.048828 34 13 3 0 0 0 0.68777 1 26985 26985 5.4027 1.5264 1 3498900 15943 6909 10902 11108 19070 19070 0.08978284156728478 GHPLLLVLA 9 Unmodified _GHPLLLVLA_ 0 0 0 REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF REV__ENST00000397887.7_1_21:46270379-46270601:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2420043945312 2 466.80002 931.585488 0.28697 0.00013396 -1.3342 -0.00062281 -1.0472 -0.00048885 466.7996721245764 62.492 0.2049 62.47 62.375 62.58 -0.021618 16 10 2 0 0 0 0.18941 1 34155 34155 14.582 0 1 6179700 + 15944 26549 10903 11109 19071 19071 0.11695842553501734 GHPLLTVPV 9 Unmodified _GHPLLTVPV_ 0 0 0 REV__ENST00000483151.5_1_6:33259881-33261471:-|nuORF REV__ENST00000483151.5_1_6:33259881-33261471:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2422180175781 2 466.781828 931.549102 0.67721 0.00031611 0.26489 0.00012365 0.9421 0.00043975 466.78142804132335 56.941 0.11522 56.872 56.78 56.895 -0.068741 7 5 2 0 0 0 0.17158 1 30971 30971 9.3474 0 1 1433100 + 15945 27736 10904 11110 19072 19072 0.08058965656812234 GHPQPAPTP 9 Unmodified _GHPQPAPTP_ 0 0 0 REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2308654785156 2 451.229959 900.445365 -0.22588 -0.00010192 0.97648 0.00044061 0.7506 0.00033869 451.2304800241955 17.625 0.16113 17.625 17.553 17.715 0 30 24 2 0 0 0 0.45045 1 8698 8698 10.074 0 1 510540 + 15946 26245 10905 11111 19073 19073 -0.008839414508543086 GHPQPAPTP 9 Unmodified _GHPQPAPTP_ 0 0 0 REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2301330566406 2 451.229959 900.445365 1.0169 0.00045885 -0.35524 -0.0001603 0.66165 0.00029856 451.2296112180209 19.008 0.16995 16.386 16.32 16.49 -2.6215 15 10 2 0 0 0 0.23158 1 10052 10052 20.454 0 1 1342400 + 15947 26245 10905 11111 19074 19074 -0.008839414508543086 GHPQPAPTP 9 Unmodified _GHPQPAPTP_ 0 0 0 REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF REV__ENST00000377264.7_2_11:64669793-64670087:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 451.229959 900.445365 -0.22588 -0.00010192 0.97648 0.00044061 0.7506 0.00033869 451.2304800241955 17.625 0.16113 17.625 17.553 17.715 0 0 0 NaN 10.074 30 24 2 NaN NaN NaN NaN 0 NaN NaN 0 510540 + 15948 26245 10905 11111 -0.008839414508543086 GHPRRPVM 8 Unmodified _GHPRRPVM_ 0 0 0 ENST00000409786.1_1_2:171570143-171571073:-|nuORF ENST00000409786.1_1_2:171570143-171571073:-|nuORF ENST00000409786.1_1_2:171570143-171571073:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.2627563476562 2 475.261071 948.507589 NaN NaN NaN NaN NaN NaN NaN 63.481 1 57.305 56.805 57.805 -6.1757 0 0 0 0.85111 1 41046 41046 20.871 7.3633 1 15949 12967 10906 11112 19075 19075 0.03127506416490178 GHQDGCQDHAW 11 Unmodified _GHQDGCQDHAW_ 0 0 0 ENST00000466757.7_1_10:73472535-73475261:+|nuORF;ENST00000442677.3_1_10:73474904-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.2412719726562 2 627.241261 1252.46797 NaN NaN NaN NaN NaN NaN NaN 20.908 1 20.919 20.419 21.419 0.010553 0 0 0 0.9435 1 10680 10680 0 0 1 15950 13412 10907 11113 19076 19076 -0.14816710115542264 GHQDHDTHHH 10 Unmodified _GHQDHDTHHH_ 0 0 0 ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5031433105469 3 407.502853 1219.48673 0.81417 0.00033178 0.41013 0.00016713 1.2243 0.00049891 407.50296862204914 43.355 0.71561 38.59 38.304 39.019 -4.7648 88 47 2 0 0 0 0.70151 1 26164 26164 2.8433 1.6499 1 128710000 15951 5674 10908 11114 19077 19077 -0.11423412429485325 GHQDHDTHHH 10 Unmodified _GHQDHDTHHH_ 0 0 0 ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 407.502853 1219.48673 0.018658 7.603E-06 0.59442 0.00024223 0.61307 0.00024983 407.5030033291577 38.654 0.32466 38.367 38.217 38.541 -0.28687 -0.034668 0.00046612 NaN 2.8433 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 11342000 15952 5674 10908 11114 -0.11423412429485325 GHQDHDTHHH 10 Unmodified _GHQDHDTHHH_ 0 0 0 ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 407.502853 1219.48673 0.81417 0.00033178 0.41013 0.00016713 1.2243 0.00049891 407.50296862204914 43.355 0.71561 38.59 38.304 39.019 -4.7648 0.18892 0.00024083 NaN 2.8433 88 47 2 NaN NaN NaN NaN 0 NaN NaN 0 128710000 15953 5674 10908 11114 -0.11423412429485325 GHRRRRRRRRS 11 Unmodified _GHRRRRRRRRS_ 0 0 0 REV__ENST00000366641.3_1_1:231557623-231557677:-|nuORF REV__ENST00000366641.3_1_1:231557623-231557677:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.9912414550781 4 387.990241 1547.93186 1.5541 0.00060298 1.0335 0.00040099 2.5876 0.001004 387.99076030289086 89.364 0.60013 83.188 82.727 83.327 -6.1757 61 33 2 0 0 0 0.74429 1 58850 58850 0.094841 0.094841 1 72583000 + 15954 25961 10909 11115 19078 19078 0.17980825282256774 GHSAAARSKA 10 Unmodified _GHSAAARSKA_ 0 0 0 ENST00000584950.5_1_17:16852246-16875361:-|nuORF ENST00000584950.5_1_17:16852246-16875361:-|nuORF ENST00000584950.5_1_17:16852246-16875361:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.6154174804688 2 478.25704 954.499526 NaN NaN NaN NaN NaN NaN NaN 105.01 1 98.832 98.332 99.332 -6.1757 0 0 0 0.96104 1 70306 70306 4.897 1.3005 1 15955 15600 10910 11116 19079 19079 0.020456507006997526 GHSEYSDSEGY 11 Unmodified _GHSEYSDSEGY_ 0 0 0 ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862 ENSG00000143520|ENST00000388718|FLG2 ENSG00000143520|ENST00000388718|FLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.8228454589844 3 410.823035 1229.44728 0.29125 0.00011965 -0.65036 -0.00026718 -0.35911 -0.00014753 410.82289665914686 38.514 0.19388 38.514 38.426 38.62 0 19 9 3 0 0 0 0.73115 1 20603 20603 0.45452 0 1 1605600 + 15956 207 10911 11117 19080 19080 -0.1582702201419579 GHSGSPQRCRF 11 Unmodified _GHSGSPQRCRF_ 0 0 0 REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF REV__ENST00000494591.1_1_4:144346351-144346597:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3261108398438 2 616.291088 1230.56762 -0.11826 -7.2883E-05 -0.89447 -0.00055125 -1.0127 -0.00062414 616.2907932727272 34.108 0.12994 33.916 33.843 33.972 -0.19131 6 4 2 0 0 0 0.30346 1 17796 17796 4.5289 0.93237 1 535740 + 15957 27939 10912 11118 19081 19081 -0.038438477109593805 GHSGSSCF 8 Unmodified _GHSGSSCF_ 0 0 0 ENST00000546536.5_1_14:105957646-105963882:+|nuORF;ENST00000551538.5_1_14:105963624-105963882:+|nuORF ENST00000546536.5_1_14:105957646-105963882:+|nuORF ENST00000546536.5_1_14:105957646-105963882:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.1519775390625 2 391.15032 780.286088 NaN NaN NaN NaN NaN NaN NaN 33.441 1 29.455 28.955 29.955 -3.9853 0 0 0 0.9706 1 19177 19177 6.3541 3.4649 1 15958 15108 10913 11119 19082 19082 -0.11284398070495172 GHSLPSFIWL 10 Unmodified _GHSLPSFIWL_ 0 0 0 REV__ENST00000393085.3_1_7:135614001-135614097:-|nuORF REV__ENST00000393085.3_1_7:135614001-135614097:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2902221679688 2 578.811116 1155.60768 0.80946 0.00046853 2.9919 0.0017318 3.8014 0.0022003 578.8125369403649 63.321 0.22081 63.299 63.201 63.422 -0.021614 20 10 3 0 0 0 0.23227 1 34605 34605 6.7232 0 1 2806000 + 15959 26412 10914 11120 19083 19083 0.03610022231282528 GHSTSWLLFS 10 Unmodified _GHSTSWLLFS_ 0 0 0 REV__ENST00000460633.1_1_6:32609817-32609862:+|nuORF REV__ENST00000460633.1_1_6:32609817-32609862:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2781372070312 2 567.782556 1133.55056 0.26165 0.00014856 -2.5761 -0.0014627 -2.3144 -0.0013141 567.780562019489 40.024 0.33885 40.024 39.853 40.192 0 40 16 3 0 0 0 0.23634 1 21503 21503 6.7232 0 1 10881000 + 15960 27300 10915 11121 19084 19084 -0.01087445045095592 GHVILEVNGL 10 Unmodified _GHVILEVNGL_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.8006591796875 2 525.800749 1049.58694 0.6494 0.00034146 -1.2123 -0.00063744 -0.56293 -0.00029599 525.800067363113 67.082 0.33629 67.082 66.912 67.248 0 30 14 3 0 0 0 0.60478 2 37368 37368;37477 17.113 4.1525 1 2208900 15961 1653 10916 11122 19085;19086 19085 0.06413431851638052 GHVQKFILI 9 Unmodified _GHVQKFILI_ 0 0 0 REV__nc|ENSG00000009765|Q6PHW0-7|IYD REV__nc|ENSG00000009765|Q6PHW0-7|IYD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2188110351562 3 352.218443 1053.6335 0.16339 5.755E-05 0.01086 3.825E-06 0.17425 6.1375E-05 352.2185858722617 48.733 0.217 48.689 48.555 48.772 -0.04369 18 10 2 0 0 0 0.32871 1 26284 26284 15.248 3.0078 1 2015500 + 15962 17037 10917 11123 19087 19087 0.10882916473565274 GHWLGRQVF 9 Unmodified _GHWLGRQVF_ 0 0 0 ENST00000563642.6_1_16:1495787-1496063:-|nuORF ENST00000563642.6_1_16:1495787-1496063:-|nuORF ENST00000563642.6_1_16:1495787-1496063:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.75 2 550.293425 1098.5723 0.17681 9.73E-05 3.8962 0.002144 4.073 0.0022413 550.7970691385804 65.677 0.095589 59.501 59.445 59.541 -6.1757 7 5 2 0 0 0 0.21242 1 42628 42628 5.2307 0.90143 1 9041100 15963 15367 10918 11124 19088 19088 0.026954044941248867 GHYDTYILDF 10 Unmodified _GHYDTYILDF_ 0 0 0 REV__nc|ENSG00000167889|Q3V5L5-5|MGAT5B REV__nc|ENSG00000167889|Q3V5L5-5|MGAT5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2864990234375 2 622.285128 1242.5557 0.94511 0.00058813 1.0378 0.00064582 1.9829 0.0012339 622.2858403559055 86.288 0.77927 80.112 79.694 80.473 -6.1757 75 42 2 0 0 0 0.16524 2 56962 56814;56962 37.974 1.1966 1 24343000 + 15964 22261 10919 11125 19089;19090 19090 -0.05587185973149644 GIADLGEMIL 10 Unmodified _GIADLGEMIL_ 0 0 0 ENSG00000244067|ENST00000493422|GSTA2;ENSG00000243955|ENST00000334575|GSTA1 ENSG00000244067|ENST00000493422|GSTA2 ENSG00000244067|ENST00000493422|GSTA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2756958007812 2 516.275718 1030.53688 0.57403 0.00029636 -3.6891 -0.0019046 -3.1151 -0.0016083 516.2746966865436 82.666 0.26868 76.49 76.339 76.608 -6.1757 25 15 3 0 0 0 0.50944 1 54269 54269 15.847 4.2069 1 8122400 15965 10719 10920 11126 19091 19091 0.022835611314576454 GIAICTMVY 9 Unmodified _GIAICTMVY_ 0 0 0 nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9 nc|ENSG00000173585|P51686-2|CCR9 nc|ENSG00000173585|P51686-2|CCR9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7413024902344 2 485.740457 969.46636 0.45478 0.00022091 -0.11778 -5.721E-05 0.33701 0.0001637 485.7405746385661 82.289 0.60854 76.113 75.796 76.405 -6.1757 74 33 3 0 0 0 0.12841 1 53925 53925 30.225 2.0516 1 31990000 15966 8343 10921 11127 19092 19092 -0.019594354578657658 GIAQIWRIV 9 Unmodified _GIAQIWRIV_ 0 0 0 REV__nc|ENSG00000139220|O75334-8|PPFIA2 REV__nc|ENSG00000139220|O75334-8|PPFIA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3232421875 2 528.321651 1054.62875 NaN NaN NaN NaN NaN NaN NaN 26.238 1 26.265 25.765 26.765 0.026951 0 0 0 0.7243 1 13606 13606 8.5933 0.68312 1 + 15967 20395 10922 11128 19093 19093 0.10362032330772308 GICKPRPL 8 Unmodified _GICKPRPL_ 0 0 0 REV__ENST00000555004.2_3_14:96553592-96553760:+|nuORF REV__ENST00000555004.2_3_14:96553592-96553760:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2649536132812 2 442.262748 882.510943 NaN NaN NaN NaN NaN NaN NaN 65.84 1 65.84 65.34 66.34 0 0 0 0 0.97444 1 36722 36722 2.3027 0 1 + 15968 28764 10923 11129 19094 19094 0.06498756470489297 GICVMGCV 8 Unmodified _GICVMGCV_ 0 0 0 REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.1744384765625 2 391.173895 780.333238 NaN NaN NaN NaN NaN NaN NaN 77.317 1 71.141 70.641 71.641 -6.1757 0 0 0 0.9706 1 50570 50570 6.3541 0 1 + 15969 17144 10924 11130 19095 19095 -0.06571578115358534 GIDCASGDTF 10 Unmodified _GIDCASGDTF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2014770507812 2 493.200207 984.385861 0.18941 9.3416E-05 2.2053 0.0010877 2.3948 0.0011811 493.20148519219157 50.276 0.29926 50.276 50.134 50.433 0 19 13 2 0 0 0 0.6606 1 27715 27715 7.2892 0 1 1765600 15970 16372 10925 11131 19096 19096 -0.10695625247194585 GIDCASGDTF 10 Unmodified _GIDCASGDTF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.1976928710938 2 493.200207 984.385861 NaN NaN NaN NaN NaN NaN NaN 51.78 1 51.78 51.28 52.28 0 0 0 0 0.91523 1 28620 28620 7.2892 0.93513 1 15971 16372 10925 11131 19097 19097 -0.10695625247194585 GIDCASGDTF 10 Unmodified _GIDCASGDTF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MSMS AL20221201_MKP_PDAC_01 4 493.2028198242188 2 493.200207 984.385861 NaN NaN NaN NaN NaN NaN NaN 57.514 1 51.486 50.986 51.986 -6.0275 0 0 0 0.83398 1 36788 36788 10.824 0.64053 1 15972 16372 10925 11131 19098 19098 -0.10695625247194585 GIDCASGDTF 10 Unmodified _GIDCASGDTF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1;ENSG00000168827|ENST00000486715|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.200207 984.385861 0.89889 0.00044333 1.6987 0.00083778 2.5975 0.0012811 493.2011043836851 50.747 0.30569 50.333 50.132 50.438 -0.41351 0.02837 -4.2601E-05 NaN 7.2892 33 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2887200 15973 16372 10925 11131 -0.10695625247194585 GIDPSWIL 8 Unmodified _GIDPSWIL_ 0 0 0 REV__ENSG00000187994|ENST00000591812|RINL REV__ENSG00000187994|ENST00000591812|RINL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7449035644531 2 450.744911 899.475269 0.56505 0.00025469 -0.66102 -0.00029795 -0.095973 -4.326E-05 450.7445212751037 62.527 0.35224 62.04 61.831 62.183 -0.48764 39 16 3 0 0 0 0.72953 1 34130 34130 14.582 0 1 8414300 + 15974 23679 10926 11132 19099 19099 0.0215099749447063 GIDTDDYSYMR 11 Unmodified _GIDTDDYSYMR_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 445.8564147949219 3 445.85557 1334.54488 1.0207 0.0004551 0.77075 0.00034364 1.7915 0.00079874 445.85580829914437 46.146 0.25799 46.146 45.994 46.252 0 37 11 5 0 0 0 0.73115 1 25221 25221 0.45452 0.046251 1 6238300 + 15975 21988 10927 11133 19100 19100 -0.10900956409750506 GIDTDDYSYMR 11 Unmodified _GIDTDDYSYMR_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 445.8563232421875 3 445.85557 1334.54488 0.50476 0.00022505 0.68592 0.00030582 1.1907 0.00053087 445.85605031260053 46.465 0.31345 46.128 45.995 46.309 -0.33664 63 15 7 0 0 0 0.71036 1 24859 24859 1.3296 0.21989 1 42074000 + 15976 21988 10927 11133 19101 19101 -0.10900956409750506 GIDTDDYSYMR 11 Unmodified _GIDTDDYSYMR_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 445.85557 1334.54488 1.0207 0.0004551 0.77075 0.00034364 1.7915 0.00079874 445.85580829914437 46.146 0.25799 46.146 45.994 46.252 0 -0.0099085 -2.2181E-05 NaN 1.3296 37 11 5 NaN NaN NaN NaN 0 NaN NaN 0 6238300 + 15977 21988 10927 11133 -0.10900956409750506 GIDTDDYSYMR 11 Unmodified _GIDTDDYSYMR_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 445.85557 1334.54488 0.50476 0.00022505 0.68592 0.00030582 1.1907 0.00053087 445.85605031260053 46.465 0.31345 46.128 45.995 46.309 -0.33664 -0.027803 -0.00013565 NaN 1.3296 63 15 7 NaN NaN NaN NaN 0 NaN NaN 0 42074000 + 15978 21988 10927 11133 -0.10900956409750506 GIDTDDYSYMR 11 Unmodified _GIDTDDYSYMR_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 445.85557 1334.54488 1.0983 0.00048967 1.2139 0.00054122 2.3121 0.0010309 446.1900677197873 46.227 0.24842 46.194 46.059 46.307 -0.033417 0.037711 0.00057054 NaN 1.3296 23 11 4 NaN NaN NaN NaN 0 NaN NaN 0 3875100 + 15979 21988 10927 11133 -0.10900956409750506 GIDTILATHN 10 Unmodified _GIDTILATHN_ 0 0 0 REV__nc|ENSG00000156313|Q92834-5|RPGR REV__nc|ENSG00000156313|Q92834-5|RPGR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3031616210938 2 527.780013 1053.54547 0.24466 0.00012913 -3.8342 -0.0020236 -3.5896 -0.0018945 527.7778979606037 74.617 0.22041 74.663 74.573 74.793 0.045959 16 9 2 0 0 0 0.22811 1 41102 41102 14.838 0.93222 1 695980 + 15980 21328 10928 11134 19102 19102 0.020842510923102964 GIDVTIQTY 9 Unmodified _GIDVTIQTY_ 0 0 0 REV__nc|ENSG00000086062|P15291-2|B4GALT1 REV__nc|ENSG00000086062|P15291-2|B4GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7651062011719 2 505.263665 1008.51278 0.76757 0.00038783 -0.21001 -0.00010611 0.55756 0.00028172 505.2636445195899 74.047 0.4467 74.047 73.786 74.233 0 54 20 3 0 0 0 0.37804 1 41145 41145 13.508 1.8676 1 5424700 + 15981 17764 10929 11135 19103 19103 0.008860439694217348 GIDVTIQTY 9 Unmodified _GIDVTIQTY_ 0 0 0 REV__nc|ENSG00000086062|P15291-2|B4GALT1 REV__nc|ENSG00000086062|P15291-2|B4GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7642211914062 2 505.263665 1008.51278 0.29725 0.00015019 0.52889 0.00026723 0.82615 0.00041742 505.2639759069753 74.556 0.6081 74.08 73.768 74.376 -0.47588 62 25 4 0 0 0 0.37804 1 40735 40735 13.508 1.8676 1 11198000 + 15982 17764 10929 11135 19104 19104 0.008860439694217348 GIEDDDYQEY 10 Unmodified _GIEDDDYQEY_ 0 0 0 REV__ENSG00000135521|ENST00000367576|LTV1 REV__ENSG00000135521|ENST00000367576|LTV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.283447265625 2 623.740948 1245.46734 0.2834 0.00017677 -0.2596 -0.00016192 0.023807 1.4849E-05 623.7418492215999 63.255 0.22149 63.255 63.073 63.295 0 12 8 2 0 0 0 0.23986 1 35188 35188 1.6526 0 1 579820 + 15983 20075 10930 11136 19105 19105 -0.14557271074272649 GIEKVQEV 8 Unmodified _GIEKVQEV_ 0 0 0 REV__nc|ENSG00000115970|Q6YHU6-2|THADA REV__nc|ENSG00000115970|Q6YHU6-2|THADA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2537841796875 2 451.2531 900.491647 0.61459 0.00027734 -0.40793 -0.00018408 0.20666 9.3257E-05 451.2528188583593 57.914 0.32185 57.914 57.736 58.058 0 23 13 2 0 0 0 0.63229 1 32222 32222 23.148 0 1 2481800 + 15984 19017 10931 11137 19106 19106 0.03742078660570769 GIEPPNKV 8 Unmodified _GIEPPNKV_ 0 0 0 chr11:118117454-118125300|125|13.64|0.64|4.42|+|2|TE_info:LTR16D,LTR16D_dup814,ERVL,LTR,acceptor,+,118125300,118125550|TMPRSS4,None|4 chr11:118117454-118125300|125|13.64|0.64|4.42|+|2|TE_info:LTR16D,LTR16D_dup814,ERVL,LTR,acceptor,+,118125300,118125550|TMPRSS4,None|4 chr11:118117454-118125300|125|13.64|0.64|4.42|+|2|TE_info:LTR16D,LTR16D_dup814,ERVL,LTR,acceptor,+,118125300,118125550|TMPRSS4,None|4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2417907714844 2 427.242535 852.470518 NaN NaN NaN NaN NaN NaN NaN 64.517 1 64.517 64.017 65.017 0 0 0 0 0.95201 1 35981 35981 10.183 1.5901 1 15985 67 10932 11138 19107 19107 0.038381133517077615 GIEQFYDRDI 10 Unmodified _GIEQFYDRDI_ 0 0 0 REV__ENSG00000141429|ENST00000269195|GALNT1 REV__ENSG00000141429|ENST00000269195|GALNT1 MSMS AL20221201_MKP_PDAC_01 4 628.2614135742188 2 628.30131 1254.58807 NaN NaN NaN NaN NaN NaN NaN 102.96 1 96.782 96.282 97.282 -6.1757 0 0 0 0.94014 1 69062 69062 6.2058 1.8765 1 + 15986 20533 10933 11139 19108 19108 -0.029043985701491692 GIERLHYF 8 Unmodified _GIERLHYF_ 0 0 0 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7946166992188 2 517.774534 1033.53451 0.25336 0.00013118 -0.21681 -0.00011226 0.036551 1.8925E-05 518.2752430908371 100.34 0.13435 100.18 100.06 100.19 -0.1575 5 4 2 0 0 0 0.80676 1 54751 54751 2.5775 0 1 156990 + 15987 18666 10934 11140 19109 19109 0.01908893508652909 GIERLHYF 8 Unmodified _GIERLHYF_ 0 0 0 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 517.774534 1033.53451 0.25336 0.00013118 -0.21681 -0.00011226 0.036551 1.8925E-05 518.2752430908371 100.34 0.13435 100.18 100.06 100.19 -0.1575 0 0 NaN 2.5775 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 156990 + 15988 18666 10934 11140 0.01908893508652909 GIESRNSDI 9 Unmodified _GIESRNSDI_ 0 0 0 REV__nc|ENSG00000178568|Q15303-2|ERBB4 REV__nc|ENSG00000178568|Q15303-2|ERBB4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.242431640625 2 495.74617 989.477788 -0.19728 -9.78E-05 -0.55569 -0.00027548 -0.75297 -0.00037328 495.74409133677267 45.098 0.078579 45.098 45.036 45.114 0 5 3 2 0 0 0 0.18118 1 24560 24560 18.135 7.0205 1 2244700 + 15989 23051 10935 11141 19110 19110 -0.01737198838520726 GIFFMCVYYC 10 Unmodified _GIFFMCVYYC_ 0 0 0 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 ENSG00000260903|ENST00000562532|XKR7 MSMS AL20221201_MKP_PDAC_01 4 415.8434143066406 3 415.842891 1244.50684 NaN NaN NaN NaN NaN NaN NaN 18.065 1 15.443 14.943 15.943 -2.6215 0 0 0 0.98914 1 9493 9493 0.77653 0.078866 1 15990 10832 10936 11142 19111 19111 -0.1056283712973709 GIFGGHIRSV 10 Unmodified _GIFGGHIRSV_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10 ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7930297851562 2 521.793258 1041.57196 0.10326 5.3881E-05 -1.4126 -0.00073706 -1.3093 -0.00068318 521.7923580626926 38.756 0.18159 38.767 38.658 38.84 0.011452 19 8 3 0 0 0 0.30444 1 20609 20609 27.223 4.487 1 5079800 15991 2110 10937 11143 19112 19112 0.05283984774268902 GIFYNPQYI 9 Unmodified _GIFYNPQYI_ 0 0 0 ENST00000220531.7_1_15:45900273-45900399:+|nuORF ENST00000220531.7_1_15:45900273-45900399:+|nuORF ENST00000220531.7_1_15:45900273-45900399:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.8816833496094 3 372.190442 1113.5495 1.6979 0.00063193 2.6 0.00096768 4.2978 0.0015996 372.19123197511664 20.286 0.1402 17.594 17.525 17.666 -2.693 11 8 2 0 0 0 0.20528 1 10820 10820 5.2969 0 1 1290600 15992 11027 10938 11144 19113 19113 -0.002736594140287707 GIGEVDVVL 9 Unmodified _GIGEVDVVL_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 900.5067138671875 1 900.503674 899.496398 0.096275 8.6696E-05 2.537 0.0022845 2.6332 0.0023712 900.5061840210126 58.499 0.19254 58.499 58.414 58.606 0 10 7 2 0 0 0 0.2001 1 32590 32590 23.148 0 1 683070 + 15993 21382 10939 11145 19114 19114 0.04262962803340997 GIGRVWVKGI 10 Unmodified _GIGRVWVKGI_ 0 0 0 ENST00000591365.1_1_17:43298722-43299568:-|nuORF ENST00000591365.1_1_17:43298722-43299568:-|nuORF ENST00000591365.1_1_17:43298722-43299568:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2265319824219 3 362.225709 1083.6553 0.88354 0.00032004 -0.13741 -4.9772E-05 0.74613 0.00027027 362.2258116320014 23.921 0.22464 21.094 21.024 21.248 -2.8273 23 12 2 0 0 0 0.60623 1 12982 12982 9.544 9.544 1 2137900 15994 15704 10940 11146 19115 19115 0.11681721222134911 GIHGFLFVAR 10 Unmodified _GIHGFLFVAR_ 0 0 0 ENST00000487190.1_1_10:126177037-126182328:+|nuORF ENST00000487190.1_1_10:126177037-126182328:+|nuORF ENST00000487190.1_1_10:126177037-126182328:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8820190429688 3 372.881943 1115.624 0.75429 0.00028126 0.28047 0.00010458 1.0348 0.00038584 372.8819864599209 64.47 0.34779 64.459 64.298 64.646 -0.010536 59 17 5 0 0 0 0.54684 1 35272 35272 8.4443 2.2385 1 25341000 15995 14199 10941 11147 19116 19116 0.07081148188035513 GIHGFLFVAR 10 Unmodified _GIHGFLFVAR_ 0 0 0 ENST00000487190.1_1_10:126177037-126182328:+|nuORF ENST00000487190.1_1_10:126177037-126182328:+|nuORF ENST00000487190.1_1_10:126177037-126182328:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8826599121094 3 372.881943 1115.624 1.3014 0.00048525 -0.25527 -9.5185E-05 1.0461 0.00039007 372.88197960480073 90.359 0.37375 84.183 83.951 84.324 -6.1757 57 21 4 0 0 0 0.54684 1 59732 59732 8.4443 0 1 43196000 15996 14199 10941 11147 19117 19117 0.07081148188035513 GIICYEVSD 9 Unmodified _GIICYEVSD_ 0 0 0 REV__ENSG00000130227|ENST00000252512|XPO7 REV__ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.72802734375 2 499.7286 997.442648 0.74917 0.00037438 -1.3415 -0.00067037 -0.59229 -0.00029599 499.72791765554666 46.01 0.36224 41.055 40.878 41.241 -4.9549 49 23 3 0 0 0 0.39863 1 28410 28410 12.532 3.1841 1 29242000 + 15997 19707 10942 11148 19118 19118 -0.05617577690691178 GIIKCYHYWP 10 Unmodified _GIIKCYHYWP_ 0 0 0 nc|ENSG00000204179|Q4JDL3-6|PTPN20;nc|ENSG00000204179|Q4JDL3-4|PTPN20;nc|ENSG00000204179|Q4JDL3-3|PTPN20;nc|ENSG00000204179|Q4JDL3-2|PTPN20;ENSG00000204179|ENST00000374339|PTPN20 nc|ENSG00000204179|Q4JDL3-6|PTPN20 nc|ENSG00000204179|Q4JDL3-6|PTPN20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3199462890625 2 640.318251 1278.62195 -0.79061 -0.00050624 2.1751 0.0013928 1.3845 0.00088651 640.821056021639 18.425 0.041214 18.448 18.428 18.469 0.023106 11 9 2 0 0 0 0.72464 1 9248 9248 0.45834 0.15131 1 221300 15998 10249 10943 11149 19119 19119 -0.006216486121047637 GIKEMFRCL 9 Unmodified _GIKEMFRCL_ 0 0 0 nc|ENSG00000205863|B2RNN3-2|C1QTNF9B nc|ENSG00000205863|B2RNN3-2|C1QTNF9B nc|ENSG00000205863|B2RNN3-2|C1QTNF9B MSMS AL20221201_MKP_PDAC_01 4 365.8687133789062 3 366.192912 1095.55691 NaN NaN NaN NaN NaN NaN NaN 22.94 1 20.161 19.661 20.661 -2.7784 0 0 0 0.56093 1 12380 12380 9.544 1.5986 1 15999 16514 10944 11150 19120 19120 0.012950335904179155 GIKNGVHF 8 Unmodified _GIKNGVHF_ 0 0 0 ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2425537109375 2 436.24287 870.471186 -0.0082976 -3.6198E-06 -1.179 -0.00051434 -1.1873 -0.00051796 436.2424371372904 51.427 0.15343 51.373 51.306 51.46 -0.053871 12 7 2 0 0 0 0.32412 1 27846 27846 52.693 16.227 1 1424300 16000 5010 10945 11151 19121 19121 0.030769527914117134 GIKPFLERF 9 Unmodified _GIKPFLERF_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN;ENST00000495714.1_1_7:36447357-36456706:+|nuORF ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5508117675781 3 369.550082 1105.62842 1.5551 0.00057468 -0.19114 -7.0636E-05 1.3639 0.00050404 369.54996771755793 80.293 1.388 74.118 73.073 74.462 -6.1757 282 81 4 0 0 0 0.39863 1 52439 52439 8.1555 0.54658 1 438630000 16001 447 10946 11152 19122 19122 0.07982612610931028 GILDGLFLL 9 Unmodified _GILDGLFLL_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 960.5779418945312 1 960.576445 959.569169 0.79804 0.00076658 1.3823 0.0013278 2.1803 0.0020943 960.5773138427622 102.23 0.11551 96.056 95.978 96.093 -6.1757 11 4 3 0 0 0 0.023164 1 68600 68600 60.39 0 1 8542600 16002 8577 10947 11153 19123 19123 0.087767165967648 GILDMIKTYI 10 Unmodified _GILDMIKTYI_ 0 0 0 REV__nc|ENSG00000173852|Q2PZI1|DPY19L1 REV__nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2195129394531 3 389.554504 1165.64168 -0.47777 -0.00018612 0.39093 0.00015229 -0.086846 -3.3831E-05 389.5547279987623 20.139 0.26499 20.139 20.092 20.357 0 27 17 2 0 0 0 0.23896 1 10135 10135 1.7423 0 1 576510 + 16003 22755 10948 11154 19124 19124 0.0654868260803596 GILFAWLE 8 Unmodified _GILFAWLE_ 0 0 0 REV__ENSG00000099960|ENST00000382932|SLC7A4 REV__ENSG00000099960|ENST00000382932|SLC7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2664794921875 2 474.763104 947.511654 -0.1535 -7.2876E-05 1.514 0.00071878 1.3605 0.00064591 474.76366824467584 30.526 0.44275 30.556 30.413 30.856 0.030104 28 19 2 0 0 0 0.80722 1 15936 15936 2.3027 0.4585 1 922520 + 16004 17996 10949 11155 19125 19125 0.03579874391175508 GILGLWFCIK 10 Unmodified _GILGLWFCIK_ 0 0 0 ENST00000453168.5_1_3:31659437-31661461:+|nuORF ENST00000453168.5_1_3:31659437-31661461:+|nuORF ENST00000453168.5_1_3:31659437-31661461:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.5256958007812 3 383.887817 1148.64162 0.83185 0.00031934 -1.0203 -0.00039168 -0.18845 -7.2342E-05 383.8874265322614 17.398 0.13902 14.812 14.708 14.847 -2.5866 27 20 2 0 0 0 0.23922 1 9046 9046 0.69767 0 1 2465300 16005 13551 10950 11156 19126 19126 0.07324727398645337 GILLRLPQV 9 Unmodified _GILLRLPQV_ 0 0 0 nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;ENST00000466101.1_1_3:156877139-156877916:-|nuORF nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8306274414062 2 504.831852 1007.64915 1.3958 0.00070462 -1.7338 -0.0008753 -0.33809 -0.00017068 504.8310272288565 95.723 0.21259 89.547 89.431 89.644 -6.1757 21 13 2 0 0 0 0.013323 1 63413 63413 71.134 10.744 1 9383700 16006 7044 10951 11157 19127 19127 0.14563202990598256 GILPMVPEV 9 Unmodified _GILPMVPEV_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.5319213867188 1 954.532866 953.52559 0.13164 0.00012566 0.39552 0.00037754 0.52717 0.0005032 954.5329165457695 99.774 0.12696 93.598 93.525 93.652 -6.1757 12 8 2 0 0 0 0.013472 1 66535 66535 70.716 38.599 1 29699000 16007 3763 10952 11158 19128 19128 0.04696783827978379 GILRFYYFFF 10 Unmodified _GILRFYYFFF_ 0 0 0 ENST00000475864.1_1_21:15596700-15599246:+|nuORF ENST00000475864.1_1_21:15596700-15599246:+|nuORF ENST00000475864.1_1_21:15596700-15599246:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 458.7791442871094 3 458.241137 1371.70158 1.0223 0.00046848 -0.61457 -0.00028162 0.40777 0.00018686 458.24104752214004 94.81 0.11831 88.634 88.592 88.711 -6.1757 9 6 2 0 0 0 0.23723 1 62791 62791 3.8763 1.97 1 7961300 16008 13969 10953 11159 19129 19129 0.030597413335499368 GILTAVLPCL 10 Unmodified _GILTAVLPCL_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2970581054688 2 500.298996 998.583439 NaN NaN NaN NaN NaN NaN NaN 52.988 1 52.925 52.425 53.425 -0.063423 0 0 0 0.81521 1 28723 28723 11.64 0.81637 1 16009 2096 10954 11160 19130 19130 0.08409045753398914 GIMDHRSFRDF 11 Unmodified _GIMDHRSFRDF_ 0 0 0 REV__ENSG00000134207|ENST00000610222|SYT6 REV__ENSG00000134207|ENST00000610222|SYT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.8883361816406 3 460.887428 1379.64045 0.5777 0.00026625 0.74781 0.00034466 1.3255 0.00061091 460.88786067666695 78.238 0.34261 78.238 78.054 78.397 0 36 14 4 0 0 0 0.72981 1 43460 43460 1.4551 0.12547 1 1991300 + 16010 19961 10955 11161 19131 19131 -0.034181387082071524 GINECWRY 8 Unmodified _GINECWRY_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.3011474609375 2 520.734551 1039.45455 1.2758 0.00066437 1.2641 0.00065827 2.5399 0.0013226 520.7352406299468 89.467 0.48382 83.291 82.986 83.47 -6.1757 36 26 2 0 0 0 8.7369 1 58942 58942 2.8892 0 1 11208000 + 16011 21902 10956 11162 19132 19132 -0.06359916156816325 GIPALGIVL 9 Unmodified _GIPALGIVL_ 0 0 0 ENST00000487137.6_1_14:23516386-23516554:-|nuORF ENST00000487137.6_1_14:23516386-23516554:-|nuORF ENST00000487137.6_1_14:23516386-23516554:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7812805175781 2 426.781296 851.54804 0.45998 0.00019631 -0.13311 -5.6809E-05 0.32687 0.0001395 426.78121980538725 87.568 0.43337 87.063 86.9 87.334 -0.50423 34 19 2 0 0 0 0.085487 2 47977 47878;47977 36.466 8.2929 1 1933100 16012 14196 10957 11163 19133;19134 19134 0.11632751287891097 GIPALGIVL 9 Unmodified _GIPALGIVL_ 0 0 0 ENST00000487137.6_1_14:23516386-23516554:-|nuORF ENST00000487137.6_1_14:23516386-23516554:-|nuORF ENST00000487137.6_1_14:23516386-23516554:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.7813720703125 2 426.781296 851.54804 1.4941 0.00063767 -0.17072 -7.286E-05 1.3234 0.00056481 426.7811681496702 98.06 0.69701 91.884 91.493 92.19 -6.1757 120 46 4 0 0 0 0.047696 1 65155 65155 45.75 9.2838 1 53676000 16013 14196 10957 11163 19135 19135 0.11632751287891097 GIPGLDTLHI 10 Unmodified _GIPGLDTLHI_ 0 0 0 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.296875 2 518.295299 1034.57605 NaN NaN NaN NaN NaN NaN NaN 101.23 1 101.18 100.68 101.68 -0.04216 0 0 0 0.98914 1 56236 56236 1.8442 0 1 16014 8937 10958 11164 19136 19136 0.060140294773418645 GIPYSQINN 9 Unmodified _GIPYSQINN_ 0 0 0 REV__ENSG00000165646|ENST00000644641|SLC18A2 REV__ENSG00000165646|ENST00000644641|SLC18A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.7820739746094 2 503.253631 1004.49271 0.52356 0.00026348 0.55097 0.00027728 1.0745 0.00054076 503.2537749467053 66.622 0.45062 60.446 60.177 60.628 -6.1757 57 25 4 0 0 0 0.16895 1 43389 43389 24.021 24.021 1 34193000 + 16015 22031 10959 11165 19137 19137 -0.009357069705288268 GIQEFPEN 8 Unmodified _GIQEFPEN_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4329223632812 1 933.431238 932.423961 0.58728 0.00054819 0.44255 0.00041309 1.0298 0.00096128 933.4316964387345 60.957 0.31222 60.957 60.811 61.123 0 20 12 2 0 0 0 0.46494 1 33976 33976 38.151 0 1 1029100 16016 2925 10960 11166 19138 19138 -0.044953712702408666 GIQFKQSQL 9 Unmodified _GIQFKQSQL_ 0 0 0 REV__ENSG00000150459|ENST00000382533|SAP18 REV__ENSG00000150459|ENST00000382533|SAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.793212890625 2 524.792924 1047.57129 0.2972 0.00015597 2.5303 0.0013279 2.8275 0.0014838 524.7943644746362 45.932 0.30091 45.904 45.763 46.064 -0.028011 25 13 3 0 0 0 0.13231 1 24677 24677 39.957 14.966 1 3860100 + 16017 21026 10961 11167 19139 19139 0.049411453345555856 GIQLDGRAQF 10 Unmodified _GIQLDGRAQF_ 0 0 0 REV__ENST00000564558.5_1_16:68592367-68596965:+|nuORF REV__ENST00000564558.5_1_16:68592367-68596965:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.795654296875 2 552.793455 1103.57236 1.0411 0.00057549 -3.5894 -0.0019842 -2.5483 -0.0014087 552.7952545280042 54.435 0.63281 48.57 48.266 48.899 -5.8653 129 38 5 0 0 0 0.33553 1 34495 34495 25.399 7.2643 1 167170000 + 16018 28897 10962 11168 19140 19140 0.024713597034633494 GIQQGPNQTY 10 Unmodified _GIQQGPNQTY_ 0 0 0 REV__ENSG00000100393|ENST00000263253|EP300 REV__ENSG00000100393|ENST00000263253|EP300 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.8683471679688 3 369.180605 1104.51999 1.7577 0.00064891 0.1785 6.5899E-05 1.9362 0.00071481 369.1806526561405 20.667 0.40551 17.974 17.762 18.167 -2.693 87 25 4 0 0 0 0.23634 1 11097 11097 1.7423 0 1 15296000 + 16019 18059 10963 11169 19141 19141 -0.02809223430131169 GIRKNGAL 8 Unmodified _GIRKNGAL_ 0 0 0 REV__ENSG00000147854|ENST00000276893|UHRF2 REV__ENSG00000147854|ENST00000276893|UHRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.7569580078125 2 414.756144 827.497735 0.47444 0.00019678 0.25726 0.0001067 0.7317 0.00030348 414.7561645078553 24.203 0.32704 21.375 21.159 21.486 -2.8273 30 17 2 0 0 0 0.77907 1 13102 13102 10.183 0 1 7566500 + 16020 20916 10964 11170 19142 19142 0.07708641682756934 GISEMWDKMKD 11 Unmodified _GISEMWDKMKD_ 0 0 0 ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.30517578125 2 670.304681 1338.59481 -0.25283 -0.00016947 0.42678 0.00028607 0.17395 0.0001166 670.3049563149013 33.161 0.559 33.002 32.81 33.369 -0.15919 73 22 4 0 0 0 0.56638 1 17449 17449 13.042 7.3106 1 34752000 16021 6126 10965 11171 19143 19143 -0.06094545005453256 GISFDIYSTF 10 Unmodified _GISFDIYSTF_ 0 0 0 nc|ENSG00000183346|Q8IVU9|CABCOCO1;ENSG00000183346|ENST00000648843|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2766723632812 2 575.276772 1148.53899 -0.51312 -0.00029519 -0.8186 -0.00047092 -1.3317 -0.00076611 575.2761480455368 56.551 0.21175 56.065 55.941 56.153 -0.48554 37 20 2 0 0 0 0.42068 1 30670 30670 20.454 4.3045 1 26306000 16022 9140 10966 11172 19144 19144 -0.02933686859091722 GISFDIYSTF 10 Unmodified _GISFDIYSTF_ 0 0 0 nc|ENSG00000183346|Q8IVU9|CABCOCO1;ENSG00000183346|ENST00000648843|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 575.276772 1148.53899 -0.13643 -7.8483E-05 -0.84423 -0.00048566 -0.98066 -0.00056415 575.2760321267938 56.032 0.25785 56.032 55.904 56.162 0 -0.016561 -2.2025E-05 NaN 20.454 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 9912500 16023 9140 10966 11172 -0.02933686859091722 GISFGKFLF 9 Unmodified _GISFGKFLF_ 0 0 0 REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2841796875 2 508.284203 1014.55385 1.0707 0.00054423 0.028817 1.4647E-05 1.0995 0.00055888 508.2835791744889 98.442 0.17608 92.266 92.148 92.324 -6.1757 22 11 3 0 0 0 0.08691 1 65295 65295 36.127 1.9397 1 26846000 + 16024 27327 10967 11173 19145 19145 0.04715849799572425 GISPGWMGLD 10 Unmodified _GISPGWMGLD_ 0 0 0 ENSG00000170950|ENST00000304801|PGK2 ENSG00000170950|ENST00000304801|PGK2 ENSG00000170950|ENST00000304801|PGK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.744873046875 2 516.744585 1031.47462 -0.42011 -0.00021709 2.6514 0.0013701 2.2312 0.001153 516.7454994157868 34.369 0.23401 34.369 34.226 34.46 0 20 11 2 0 0 0 0.33553 1 18074 18074 25.399 4.9457 1 2548800 16025 8049 10968 11174 19146 19146 -0.03986165216883819 GISRQGIIAV 10 Unmodified _GISRQGIIAV_ 0 0 0 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3087768554688 2 507.308741 1012.60293 1.2153 0.00061655 -0.2098 -0.00010643 1.0055 0.00051012 507.3085556104809 46.428 0.22147 46.394 46.307 46.529 -0.033417 17 10 2 0 0 0 0.30444 1 24984 24984 27.223 0.88196 1 2102800 16026 297 10969 11175 19147 19147 0.0971313808852301 GITDILSRPV 10 Unmodified _GITDILSRPV_ 0 0 0 ENSG00000165066|ENST00000518699|NKX6-3 ENSG00000165066|ENST00000518699|NKX6-3 ENSG00000165066|ENST00000518699|NKX6-3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2517700195312 2 535.813856 1069.61316 0.96951 0.00051948 0.40821 0.00021872 1.3777 0.0007382 535.8142363189401 54.443 0.44716 54.443 54.173 54.62 0 29 19 2 0 0 0 0.22941 1 30271 30271 9.3831 0 1 1739500 16027 7284 10970 11176 19148 19148 0.08113701023103204 GITGLEVTY 9 Unmodified _GITGLEVTY_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;ENST00000467500.1_1_6:111678104-111680097:-|nuORF nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7530517578125 2 476.752933 951.491313 0.24851 0.00011848 -0.078499 -3.7425E-05 0.17001 8.1055E-05 476.7528570500935 65.787 0.52773 65.787 65.503 66.03 0 66 25 4 0 0 0 0.18465 1 36710 36710 24.674 1.5255 1 30659000 16028 403 10971 11177 19149 19149 0.013626589407067513 GITNPGEVF 9 Unmodified _GITNPGEVF_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4703369140625 1 933.467623 932.460347 0.28614 0.0002671 0.030257 2.8244E-05 0.3164 0.00029535 933.4674623489035 62.192 0.41714 62.192 61.974 62.391 0 37 23 2 0 0 0 0.32871 1 34608 34608 15.847 1.0089 1 3359900 16029 3258 10972 11178 19150 19150 -0.008584943735172601 GIVDSQLRNMF 11 Unmodified _GIVDSQLRNMF_ 0 0 0 ENSG00000106013|ENST00000265224|ANKRD7;nc|ENSG00000106013|Q92527-2|ANKRD7 ENSG00000106013|ENST00000265224|ANKRD7 ENSG00000106013|ENST00000265224|ANKRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2198181152344 3 427.220295 1278.63906 -0.27423 -0.00011715 -0.31915 -0.00013635 -0.59338 -0.0002535 427.2200003832707 34.439 0.20773 34.248 34.104 34.312 -0.19131 13 8 2 0 0 0 0.67371 1 17991 17991 3.0723 0 1 3402600 16030 2392 10973 11179 19151 19151 0.010882272030585227 GIVDYRQVAL 10 Unmodified _GIVDYRQVAL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;nc|ENSG00000087299|Q9H9P8-2|L2HGDH;ENSG00000087299|ENST00000267436|L2HGDH ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3191528320312 2 567.319306 1132.62406 0.63975 0.00036294 -0.070253 -3.9856E-05 0.56949 0.00032309 567.3194598318681 53.72 0.33274 53.268 53.128 53.461 -0.45173 42 16 4 0 0 0 0.38092 1 29049 29049 22.736 2.2827 1 10653000 16031 35 10974 11180 19152 19152 0.06305103397380662 GIVPVKKKMR 10 Unmodified _GIVPVKKKMR_ 0 0 0 ENST00000222547.7_1_7:93628507-93628591:-|nuORF ENST00000222547.7_1_7:93628507-93628591:-|nuORF ENST00000222547.7_1_7:93628507-93628591:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 578.37451171875 2 578.373361 1154.73217 NaN NaN NaN NaN NaN NaN NaN 107.4 1 101.23 100.73 101.73 -6.1757 0 0 0 1.0019 1 71837 71837 0.45834 0.10771 1 16032 11037 10975 11181 19153 19153 0.160991964469531 GIVRNKPF 8 Unmodified _GIVRNKPF_ 0 0 0 REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF REV__ENST00000538451.1_1_11:18424358-18428825:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2846069335938 2 465.779619 929.544686 1.1189 0.00052114 0.1184 5.515E-05 1.2373 0.00057629 465.77890161081484 100.38 0.26134 94.209 94.03 94.291 -6.1757 25 16 2 0 0 0 0.76859 1 67054 67054 11.114 0 1 34826000 + 16033 19978 10976 11182 19154 19154 0.07709501233898663 GIWEMIEEKE 10 Unmodified _GIWEMIEEKE_ 0 0 0 REV__ENST00000566748.1_1_16:82195896-82197796:-|nuORF REV__ENST00000566748.1_1_16:82195896-82197796:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8689880371094 3 421.86904 1262.58529 NaN NaN NaN NaN NaN NaN NaN 14.906 1 14.906 14.406 15.406 0 0 0 0 1.0019 1 7132 7132 0.15932 0 1 + 16034 28923 10977 11183 19155 19155 -0.035499900193372014 GIYFHPAR 8 Unmodified _GIYFHPAR_ 0 0 0 REV__ENSG00000188869|ENST00000359440|TMC3 REV__ENSG00000188869|ENST00000359440|TMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7558898925781 2 480.756144 959.497735 NaN NaN NaN NaN NaN NaN NaN 63.347 1 63.347 62.847 63.847 0 0 0 0 0.95201 1 35334 35334 10.183 0.83596 1 + 16035 23739 10978 11184 19156 19156 0.016366416827509056 GIYLMWRHERI 11 Unmodified _GIYLMWRHERI_ 0 0 0 ENSG00000056736|ENST00000288167|IL17RB;ENST00000475124.1_1_3:53892553-53899332:+|nuORF ENSG00000056736|ENST00000288167|IL17RB ENSG00000056736|ENST00000288167|IL17RB MSMS AL20221201_MKP_PDAC_01 4 491.9293212890625 3 491.930968 1472.77107 NaN NaN NaN NaN NaN NaN NaN 58.476 1 52.402 51.902 52.902 -6.0745 0 0 0 0.9385 1 37471 37471 1.4551 0.12547 1 16036 787 10979 11185 19157 19157 0.05359877010687342 GKAANFVH 8 Unmodified _GKAANFVH_ 0 0 0 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2273864746094 2 422.22722 842.439886 0.048086 2.0303E-05 1.3732 0.00057979 1.4212 0.00060009 422.2275663105718 54.708 0.43115 54.241 53.989 54.42 -0.46664 54 21 3 0 0 0 0.80676 1 29674 29674 2.5775 1.7838 1 9739900 16037 6192 10980 11186 19158 19158 0.012363797573243573 GKAANFVH 8 Unmodified _GKAANFVH_ 0 0 0 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.22722 842.439886 0.62497 0.00026388 1.6523 0.00069764 2.2773 0.00096152 422.2278801188376 54.159 0.40679 54.159 53.968 54.375 0 -0.058371 2.3464E-05 NaN 2.5775 56 18 4 NaN NaN NaN NaN 0 NaN NaN 0 25088000 16038 6192 10980 11186 0.012363797573243573 GKAANFVH 8 Unmodified _GKAANFVH_ 0 0 0 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 ENSG00000152495|ENST00000282356|CAMK4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.22722 842.439886 0.023311 9.8425E-06 1.8455 0.00077922 1.8688 0.00078906 422.2278795724341 54.32 0.48077 54.253 53.962 54.443 -0.066936 0.035081 0.00018661 NaN 2.5775 82 23 4 NaN NaN NaN NaN 0 NaN NaN 0 145500000 16039 6192 10980 11186 0.012363797573243573 GKAFSYCSSL 10 Unmodified _GKAFSYCSSL_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184;ENSG00000196152|ENST00000342483|ZNF79 ENSG00000096654|ENST00000683788|ZNF184;ENSG00000196152|ENST00000342483|ZNF79 ENSG00000096654|ENST00000683788|ZNF184 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7952880859375 2 531.749867 1061.48518 0.034436 1.8311E-05 -0.66857 -0.00035551 -0.63414 -0.0003372 531.7494841793196 52.019 0.66596 52.019 51.71 52.376 0 43 29 2 0 0 0 0.23227 1 28942 28942 6.7232 1.9672 1 3276000 16040 1674;9770 10981 11187 19159 19159 -0.04310182562448972 GKAVSPPP 8 Unmodified _GKAVSPPP_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.7184753417969 2 376.718696 751.422839 0.26554 0.00010003 1.5135 0.00057016 1.779 0.00067019 376.71830168645386 69.96 0.5645 69.991 69.683 70.247 0.030922 63 28 3 0 0 0 0.80975 1 38573 38573 0.79363 0 1 6388300 16041 9016 10982 11188 19160 19160 0.037184591515256216 GKAWGPRL 8 Unmodified _GKAWGPRL_ 0 0 0 ENST00000425895.5_1_22:25006283-25007052:+|nuORF;ENST00000447416.5_3_22:25003962-25007052:+|nuORF;ENST00000455483.5_2_22:24999236-25007052:+|nuORF ENST00000425895.5_1_22:25006283-25007052:+|nuORF ENST00000425895.5_1_22:25006283-25007052:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7593078613281 2 442.758687 883.502821 0.79544 0.00035219 1.5142 0.00067045 2.3097 0.0010226 442.7591470582339 58.865 0.29726 58.804 58.624 58.922 -0.060722 23 14 2 0 0 0 0.80722 1 32037 32037 2.3027 0 1 1367300 16042 13171 10983 11189 19161 19161 0.05640945545383147 GKCSHGPA 8 Unmodified _GKCSHGPA_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 756.3436889648438 1 756.345734 755.338458 0.36537 0.00027635 -2.9072 -0.0021988 -2.5418 -0.0019225 756.3426740112942 72.444 0.14129 71.968 71.9 72.041 -0.47609 9 6 2 0 0 0 0.80975 1 39645 39645 0.79363 0 1 574950 + 16043 27477 10984 11190 19162 19162 -0.04899814936891289 GKDKAYAKCCQ 11 Unmodified _GKDKAYAKCCQ_ 0 0 0 REV__ENST00000398073.6_1_12:58216751-58216973:-|nuORF REV__ENST00000398073.6_1_12:58216751-58216973:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.527587890625 3 405.526731 1213.55836 NaN NaN NaN NaN NaN NaN NaN 75.527 1 75.05 74.55 75.55 -0.47714 0 0 0 0.93969 1 41345 41345 1.1098 0 1 + 16044 26556 10985 11191 19163 19163 -0.0398737711150261 GKEDIKVI 8 Unmodified _GKEDIKVI_ 0 0 0 ENSG00000132915|ENST00000255266|PDE6A ENSG00000132915|ENST00000255266|PDE6A ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2713623046875 2 451.271293 900.528032 0.75645 0.00034136 0.27319 0.00012328 1.0296 0.00046465 451.2712769035114 46.548 0.19477 46.548 46.412 46.607 0 14 8 2 0 0 0 0.60622 1 25458 25458 25.399 3.6527 1 1143500 16045 4465 10986 11192 19164 19164 0.07378955557294375 GKEKREIQVKP 11 Unmodified _GKEKREIQVKP_ 0 0 0 REV__ENST00000258381.10_2_2:231042958-231050735:-|nuORF REV__ENST00000258381.10_2_2:231042958-231050735:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.9283142089844 3 437.929621 1310.76703 NaN NaN NaN NaN NaN NaN NaN 39.666 1 39.671 39.171 40.171 0.0050545 0 0 0 0.94181 1 21133 21133 1.2148 0.588 1 + 16046 24939 10987 11193 19165 19165 0.12408110788578597 GKEMSVYEAY 10 Unmodified _GKEMSVYEAY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8490295410156 3 392.846235 1175.51688 1.2222 0.00048012 3.2678 0.0012837 4.4899 0.0017638 392.84719651018065 32.487 0.32806 28.631 28.447 28.776 -3.8562 33 17 3 0 0 0 0.65023 1 18594 18594 8.4443 0.96724 1 41761000 16047 16412 10988 11194 19166 19166 -0.06386234599153795 GKESRCCSRCT 11 Unmodified _GKESRCCSRCT_ 0 0 0 ENST00000460627.5_1_3:184104458-184107207:+|nuORF;nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD ENST00000460627.5_1_3:184104458-184107207:+|nuORF ENST00000460627.5_1_3:184104458-184107207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8462219238281 3 410.510975 1228.5111 -0.49279 -0.0002023 1.6212 0.00066554 1.1284 0.00046324 410.5115227984356 19.363 0.077497 19.386 19.33 19.407 0.023104 8 5 2 0 0 0 0.73115 1 9752 9752 0.45452 0 1 533530 16048 1561 10989 11195 19167 19167 -0.09401979654148818 GKEVNLVL 8 Unmodified _GKEVNLVL_ 0 0 0 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 MSMS AL20221201_MKP_PDAC_01 4 436.2665405273438 2 436.26601 870.517468 NaN NaN NaN NaN NaN NaN NaN 43.287 1 38.522 38.022 39.022 -4.7648 0 0 0 0.45366 1 26275 26275 46.021 3.9264 1 16049 3882 10990 11196 19168 19168 0.07702972902836791 GKFFCVFL 8 Unmodified _GKFFCVFL_ 0 0 0 REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF REV__ENST00000262370.11_1_16:4740150-4740852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7558288574219 2 480.754224 959.493896 NaN NaN NaN NaN NaN NaN NaN 73.721 1 73.721 73.221 74.221 0 0 0 0 0.97444 1 41040 41040 2.5775 0.27475 1 + 16050 25019 10991 11197 19169 19169 0.012528358646704874 GKFYDHLL 8 Unmodified _GKFYDHLL_ 0 0 0 ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B ENST00000582931.5_1_17:16836228-16875389:-|nuORF ENST00000582931.5_1_17:16836228-16875389:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.76416015625 2 496.763635 991.512717 NaN NaN NaN NaN NaN NaN NaN 46.614 1 46.581 46.081 47.081 -0.033417 0 0 0 0.93587 1 25084 25084 13.508 0 1 16051 10673 10992 11198 19170 19170 0.01662088760087954 GKFYPAHQT 9 Unmodified _GKFYPAHQT_ 0 0 0 REV__ENSG00000165672|ENST00000298510|PRDX3 REV__ENSG00000165672|ENST00000298510|PRDX3 MSMS AL20221201_MKP_PDAC_01 4 350.1806335449219 3 350.178536 1047.51378 NaN NaN NaN NaN NaN NaN NaN 19.739 1 17.083 16.583 17.583 -2.6564 0 0 0 0.70001 1 10480 10480 6.1918 0 1 + 16052 22035 10993 11199 19171 19171 -0.008076968710156507 GKGELASP 8 Unmodified _GKGELASP_ 0 0 0 REV__ENST00000403892.7_1_22:37414793-37415237:-|nuORF REV__ENST00000403892.7_1_22:37414793-37415237:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.7066040039062 2 379.705786 757.397018 NaN NaN NaN NaN NaN NaN NaN 29.646 1 29.676 29.176 30.176 0.030106 0 0 0 0.97444 1 15482 15482 2.5775 0 1 + 16053 26633 10994 11200 19172 19172 0.008615649092348576 GKGFLLEWFAV 11 Unmodified _GKGFLLEWFAV_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.1741943359375 3 422.900891 1265.68084 0.26118 0.00011045 -3.7805 -0.0015988 -3.5193 -0.0014883 422.8996748187335 39.374 0.18865 39.385 39.259 39.447 0.011452 11 8 2 0 0 0 0.30551 1 21002 21002 2.6312 0.72486 1 1160400 16054 2505 10995 11201 19173 19173 0.058631509539054605 GKGGCGAP 8 Unmodified _GKGGCGAP_ 0 0 0 REV__ENSG00000188895|ENST00000398532|MSL1 REV__ENSG00000188895|ENST00000398532|MSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.298095703125 1 646.297721 645.290445 0.22019 0.00014231 -1.1378 -0.00073535 -0.9176 -0.00059304 646.2968773463111 97.829 0.6575 97.587 97.146 97.803 -0.24277 52 30 2 0 0 0 0.81107 1 53244 53244 0 0 1 7486100 + 16055 23741 10996 11202 19174 19174 -0.04638888856936774 GKGIAPAS 8 Unmodified _GKGIAPAS_ 0 0 0 nc|ENSG00000075413|P27448-8|MARK3;nc|ENSG00000075413|P27448-6|MARK3;nc|ENSG00000075413|P27448-3|MARK3;nc|ENSG00000075413|P27448-4|MARK3;nc|ENSG00000075413|P27448-2|MARK3;ENSG00000075413|ENST00000429436|MARK3;nc|ENSG00000075413|P27448-7|MARK3 nc|ENSG00000075413|P27448-8|MARK3 nc|ENSG00000075413|P27448-8|MARK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.7047119140625 2 350.703046 699.391539 NaN NaN NaN NaN NaN NaN NaN 32.379 1 32.409 31.909 32.909 0.029743 0 0 0 0.97444 1 16999 16999 2.3027 1.6124 1 16056 1155 10997 11203 19175 19175 0.029818861174248923 GKGIPASV 8 Unmodified _GKGIPASV_ 0 0 0 REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1 REV__nc|ENSG00000285791|Q8IWW8-4|ADHFE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7201232910156 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 33.925 1 33.954 33.454 34.454 0.028934 0 0 0 0.97444 1 17865 17865 2.3027 1.5091 1 + 16057 20900 10998 11204 19176 19176 0.04822459151523617 GKGPTLSI 8 Unmodified _GKGPTLSI_ 0 0 0 REV__ENST00000486652.5_1_1:224586696-224586729:-|nuORF REV__ENST00000486652.5_1_1:224586696-224586729:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8885803222656 2 386.731803 771.449054 NaN NaN NaN NaN NaN NaN NaN 30.968 1 30.998 30.498 31.498 0.030106 0 0 0 0.97444 1 16207 16207 2.3027 1.5091 1 + 16058 27810 10999 11205 19177 19177 0.054187283229907734 GKGQTVFH 8 Unmodified _GKGQTVFH_ 0 0 0 REV__ENST00000246794.9_1_19:50093971-50094190:+|nuORF REV__ENST00000246794.9_1_19:50093971-50094190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.2338256835938 2 437.232502 872.450451 0.39126 0.00017107 2.594 0.0011342 2.9853 0.0013053 437.23338080292285 48.443 0.19738 48.072 47.945 48.143 -0.37172 15 9 2 0 0 0 0.80676 1 25997 25997 2.5775 0 1 1851700 + 16059 24867 11000 11206 19178 19178 0.009123624117592044 GKGQTVFH 8 Unmodified _GKGQTVFH_ 0 0 0 REV__ENST00000246794.9_1_19:50093971-50094190:+|nuORF REV__ENST00000246794.9_1_19:50093971-50094190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2334594726562 2 437.232502 872.450451 1.0158 0.00044413 1.3415 0.00058653 2.3572 0.0010307 437.2329869897776 47.292 0.57327 47.253 47.047 47.62 -0.038643 50 27 2 0 0 0 0.80311 1 25625 25625 4.756 0.42677 1 11336000 + 16060 24867 11000 11206 19179 19179 0.009123624117592044 GKGRRAGP 8 Unmodified _GKGRRAGP_ 0 0 0 ENST00000491771.5_1_2:152135291-152146334:-|nuORF ENST00000491771.5_1_2:152135291-152146334:-|nuORF ENST00000491771.5_1_2:152135291-152146334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.7384338378906 2 399.738286 797.462019 0.13583 5.4296E-05 0.25192 0.0001007 0.38775 0.000155 399.7383714770752 73.982 0.42982 74.026 73.803 74.233 0.043976 39 19 3 0 0 0 0.80722 1 40723 40723 2.3027 0 1 5810400 16061 14285 11001 11207 19180 19180 0.055186042257560075 GKGSNKGP 8 Unmodified _GKGSNKGP_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2018737792969 2 372.703577 743.392602 -0.32597 -0.00012149 0.05213 1.9429E-05 -0.27384 -0.00010206 372.70363744719225 34.946 0.31956 34.724 34.575 34.895 -0.2224 29 13 3 0 0 0 8.7369 1 18338 18338 2.3027 1.5091 1 14918000 16062 8006 11002 11208 19181 19181 0.010641004863373382 GKHINMDG 8 Unmodified _GKHINMDG_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2091369628906 2 436.20817 870.401786 NaN NaN NaN NaN NaN NaN NaN 33.182 1 33.211 32.711 33.711 0.028934 0 0 0 0.97444 1 17450 17450 0.69038 0.69038 1 16063 5575 11003 11209 19182 19182 -0.03859874219642734 GKHVSFYKL 9 Unmodified _GKHVSFYKL_ 0 0 0 REV__ENSG00000140527|ENST00000268130|WDR93 REV__ENSG00000140527|ENST00000268130|WDR93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2057495117188 3 360.206315 1077.59712 1.1444 0.00041223 0.3179 0.00011451 1.4623 0.00052674 360.20644375732167 45.066 0.35037 40.214 40.036 40.387 -4.852 41 22 2 0 0 0 0.25681 1 27703 27703 18.373 4.467 1 20554000 + 16064 20481 11004 11210 19183 19183 0.06142039576843672 GKHVSFYKL 9 Unmodified _GKHVSFYKL_ 0 0 0 REV__ENSG00000140527|ENST00000268130|WDR93 REV__ENSG00000140527|ENST00000268130|WDR93 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.206315 1077.59712 0.31063 0.00011189 0.40535 0.00014601 0.71598 0.0002579 360.2063895411722 40.168 0.26966 40.173 40.068 40.337 0.0050583 -0.020485 2.9897E-05 NaN 18.373 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4395800 + 16065 20481 11004 11210 0.06142039576843672 GKHYASPG 8 Unmodified _GKHYASPG_ 0 0 0 ENST00000261254.7_1_12:4411708-4411837:+|nuORF ENST00000261254.7_1_12:4411708-4411837:+|nuORF ENST00000261254.7_1_12:4411708-4411837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 817.4081420898438 1 816.399878 815.392602 -0.089849 -7.3353E-05 0.11411 9.3163E-05 0.024265 1.981E-05 816.3990364726623 46.89 0.38482 46.89 46.718 47.103 0 30 18 2 0 0 0 0.79783 1 25601 25601 7.9102 2.1497 1 5284800 16066 11236 11005 11211 19184 19184 -0.02247899513668017 GKIPRFRVPNN 11 Unmodified _GKIPRFRVPNN_ 0 0 0 REV__ENSG00000110066|ENST00000304363|KMT5B REV__ENSG00000110066|ENST00000304363|KMT5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.3781127929688 2 649.37802 1296.74149 NaN NaN NaN NaN NaN NaN NaN 102.09 1 102.09 101.59 102.59 0 0 0 0 0.94337 1 56306 56306 0 0 1 + 16067 18688 11006 11212 19185 19185 0.10498681056856185 GKKAALTNLR 10 Unmodified _GKKAALTNLR_ 0 0 0 REV__nc|nan|Q8IXR9-2|C12orf56 REV__nc|nan|Q8IXR9-2|C12orf56 MSMS AL20221201_MKP_PDAC_01 4 536.3377075195312 2 536.33529 1070.65603 NaN NaN NaN NaN NaN NaN NaN 108.47 1 102.3 101.8 102.8 -6.1757 0 0 0 1.0061 1 72496 72496 0 0 1 + 16068 23492 11007 11213 19186 19186 0.12352515871134528 GKKEGTYPVY 10 Unmodified _GKKEGTYPVY_ 0 0 0 REV__ENSG00000138594|ENST00000308580|TMOD3 REV__ENSG00000138594|ENST00000308580|TMOD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2021179199219 3 381.201118 1140.58152 NaN NaN NaN NaN NaN NaN NaN 24.852 1 24.852 24.352 25.352 0 0 0 0 0.96981 1 12715 12715 1.9064 0 1 + 16069 20339 11008 11214 19187 19187 0.01685708269155839 GKKRRWRKKRR 11 Unmodified _GKKRRWRKKRR_ 0 0 0 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 MSMS AL20221201_MKP_PDAC_01 4 518.6699829101562 3 519.006193 1553.99675 NaN NaN NaN NaN NaN NaN NaN 103.9 1 97.727 97.227 98.227 -6.1757 0 0 0 0.94337 1 69624 69624 0.094841 0.094841 1 16070 16631 11009 11215 19188 19188 0.24191007035528855 GKKRYCVGF 9 Unmodified _GKKRYCVGF_ 0 0 0 REV__TNFRSF11A|p.A241V|1|0.18|ENSG00000141655|chr18:62361785-62361785|C/T|missense_variant REV__TNFRSF11A|p.A241V|1|0.18|ENSG00000141655|chr18:62361785-62361785|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2632446289062 2 529.284211 1056.55387 NaN NaN NaN NaN NaN NaN NaN 72.38 1 71.903 71.403 72.403 -0.47609 0 0 0 0.82396 1 39610 39610 4.756 0 1 + 16071 20549 11010 11216 19189 19189 0.02785526527895854 GKLNRSHIVL 10 Unmodified _GKLNRSHIVL_ 0 0 0 REV__ENST00000495588.2_1_9:128031220-128031271:+|nuORF REV__ENST00000495588.2_1_9:128031220-128031271:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.826904296875 2 568.848564 1135.68258 0.22196 0.00012626 2.2694 0.0012909 2.4913 0.0014172 568.8498355350571 72.851 0.30938 72.893 72.719 73.029 0.041733 33 14 3 0 0 0 0.23693 1 40177 40177 6.2058 0 1 6449400 + 16072 27950 11011 11217 19190 19190 0.12016204762517191 GKMGPQRV 8 Unmodified _GKMGPQRV_ 0 0 0 REV__ENSG00000198796|ENST00000361673|ALPK2 REV__ENSG00000198796|ENST00000361673|ALPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7415161132812 2 436.742179 871.469806 0.35451 0.00015483 -0.66673 -0.00029119 -0.31222 -0.00013636 436.7419741345308 68.585 0.36681 68.585 68.35 68.717 0 24 16 2 0 0 0 0.80992 1 38194 38194 0.69038 0 1 597220 + 16073 24061 11012 11218 19191 19191 0.028929954310115136 GKNAKWENL 9 Unmodified _GKNAKWENL_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1;nc|ENSG00000260314|P22897-2|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8573913574219 3 353.857574 1058.55089 -0.4265 -0.00015092 0.75519 0.00026723 0.32869 0.00011631 353.85782227844976 20.143 0.20204 20.143 20.039 20.241 0 21 16 2 0 0 0 0.32871 1 10110 10110 10.8 1.8233 1 881490 16074 10828 11013 11219 19192 19192 0.023959746747550525 GKNRRQSMLF 10 Unmodified _GKNRRQSMLF_ 0 0 0 ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8918762207031 3 412.892513 1235.65571 0.51362 0.00021207 -0.50963 -0.00021042 0.0039937 1.649E-06 412.89220377741736 48.161 0.48557 47.808 47.615 48.1 -0.35261 49 24 3 0 0 0 0.6966 1 25928 25928 1.5923 0.39894 1 6111100 16075 819 11014 11220 19193 19193 0.047307728796795345 GKNSIDYIY 9 Unmodified _GKNSIDYIY_ 0 0 0 nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7716064453125 2 536.769114 1071.52368 1.0965 0.00058858 1.4906 0.0008001 2.5871 0.0013887 536.7699103821278 96.198 0.73587 90.022 89.569 90.305 -6.1757 109 44 4 0 0 0 0.2546 1 63653 63653 19.362 3.2128 1 29711000 16076 3281 11015 11221 19194 19194 -0.009225536563008063 GKNTKRKAKRS 11 Unmodified _GKNTKRKAKRS_ 0 0 0 REV__TCEAL2|p.P135S|1|0.16|ENSG00000184905|chrX:102127233-102127233|C/T|missense_variant REV__TCEAL2|p.P135S|1|0.16|ENSG00000184905|chrX:102127233-102127233|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3916015625 2 637.394202 1272.77385 NaN NaN NaN NaN NaN NaN NaN 103.63 1 103.58 103.08 104.08 -0.047928 0 0 0 0.94184 1 57549 57549 1.1933 0.735 1 + 16077 30111 11016 11222 19195 19195 0.14837468459813863 GKPGAQGKM 9 Unmodified _GKPGAQGKM_ 0 0 0 REV__ENSG00000204291|ENST00000375001|COL15A1 REV__ENSG00000204291|ENST00000375001|COL15A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5879516601562 2 437.234187 872.453822 0.64941 0.00028395 -0.60816 -0.00026591 0.041252 1.8037E-05 437.2338312693051 71.971 0.18003 72.01 71.893 72.073 0.039024 12 8 2 0 0 0 0.18882 1 39636 39636 15.847 2.3393 1 715610 + 16078 24154 11017 11223 19196 19196 0.012492891941178641 GKPGEDKPPHL 11 Unmodified _GKPGEDKPPHL_ 0 0 0 REV__ENSG00000114948|ENST00000264377|ADAM23 REV__ENSG00000114948|ENST00000264377|ADAM23 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.8777770996094 3 392.212017 1173.61422 0.90709 0.00035577 1.9065 0.00074775 2.8136 0.0011035 392.54725650017053 40.549 0.5405 36.02 35.718 36.258 -4.5294 57 33 3 0 0 0 0.28456 1 24174 24174 6.2344 0.042509 1 26077000 + 16079 18944 11018 11224 19197 19197 0.034359153920149765 GKPGILRQRRK 11 Unmodified _GKPGILRQRRK_ 0 0 0 REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF REV__ENST00000550023.5_1_12:75900251-75905383:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 654.9188232421875 2 654.920387 1307.82622 NaN NaN NaN NaN NaN NaN NaN 105.13 1 98.956 98.456 99.456 -6.1757 0 0 0 0.94307 1 70414 70414 0.30703 0.30703 1 + 16080 18757 11019 11225 19198 19198 0.1846205159342844 GKPHGRGV 8 Unmodified _GKPHGRGV_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2333374023438 2 404.232836 806.45112 0.70819 0.00028627 1.134 0.00045838 1.8421 0.00074465 404.23311402247776 71.4 0.68252 71.439 71.002 71.685 0.039024 71 30 3 0 0 0 0.80992 1 39330 39330 0.69038 0.69038 1 11536000 16081 269 11020 11226 19199 19199 0.040152018514731935 GKPHGRGV 8 Unmodified _GKPHGRGV_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 404.232836 806.45112 0.56665 0.00022906 0.50747 0.00020513 1.0741 0.00043419 404.23277904794907 71.846 0.32771 71.37 71.171 71.499 -0.47609 -0.034442 -0.00036463 NaN 0.69038 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 355100 16082 269 11020 11226 0.040152018514731935 GKPHGRGV 8 Unmodified _GKPHGRGV_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 404.232836 806.45112 0.70819 0.00028627 1.134 0.00045838 1.8421 0.00074465 404.23311402247776 71.4 0.68252 71.439 71.002 71.685 0.039024 0.034442 0.00014186 NaN 0.69038 71 30 3 NaN NaN NaN NaN 0 NaN NaN 0 11536000 16083 269 11020 11226 0.040152018514731935 GKPKHRRLR 9 Unmodified _GKPKHRRLR_ 0 0 0 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 MSMS AL20221201_MKP_PDAC_01 4 574.7039184570312 2 574.36779 1146.72103 NaN NaN NaN NaN NaN NaN NaN 106.89 1 100.71 100.21 101.21 -6.1757 0 0 0 0.85798 1 71526 71526 0.52476 0.066424 1 16084 10849 11021 11227 19200 19200 0.15353555187675738 GKPKRKRR 8 Unmodified _GKPKRKRR_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;ENSG00000126705|ENST00000673934|AHDC1;nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000476126.1_1_2:231134613-231152782:+|nuORF nc|ENSG00000185404|Q9H930-1|SP140L;ENSG00000126705|ENST00000673934|AHDC1;nc|ENSG00000079263|Q13342-3|SP140 nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3411865234375 2 513.343784 1024.67301 1.4598 0.00074938 0.26473 0.0001359 1.7245 0.00088528 513.3433935068208 104.02 0.35697 97.841 97.775 98.132 -6.1757 101 71 2 0 0 0 0.80722 1 69853 69853 2.3027 1.6124 1 11658000 16085 9370;3961;1268 11022 11228 19201 19201 0.16166481267623567 GKPKRKRRKKK 11 Unmodified _GKPKRKRRKKK_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 705.4838256835938 2 705.486228 1408.9579 NaN NaN NaN NaN NaN NaN NaN 106.56 1 106.52 106.02 107.02 -0.048103 0 0 0 0.9435 1 59063 59063 0 0 1 16086 9370 11023 11229 19202 19202 0.2697828168115848 GKPNQIWDL 9 Unmodified _GKPNQIWDL_ 0 0 0 ENST00000377811.3_1_X:47004160-47004361:-|nuORF ENST00000377811.3_1_X:47004160-47004361:-|nuORF ENST00000377811.3_1_X:47004160-47004361:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.7835693359375 2 535.785099 1069.55564 NaN NaN NaN NaN NaN NaN NaN 89.984 1 83.808 83.308 84.308 -6.1757 0 0 0 0.41346 1 59412 59412 19.257 0 1 16087 12530 11024 11230 19203 19203 0.0236485881750923 GKPPHLLRVL 10 Unmodified _GKPPHLLRVL_ 0 0 0 ENST00000303045.10_2_8:139926021-139926222:-|nuORF ENST00000303045.10_2_8:139926021-139926222:-|nuORF ENST00000303045.10_2_8:139926021-139926222:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 565.3627319335938 2 565.36385 1128.71315 NaN NaN NaN NaN NaN NaN NaN 105.17 1 98.991 98.491 99.491 -6.1757 0 0 0 0.99248 1 70447 70447 1.4819 0.95714 1 16088 11589 11025 11231 19204 19204 0.15393983147555446 GKPPQCRKGR 10 Unmodified _GKPPQCRKGR_ 0 0 0 REV__ENST00000355112.7_1_15:91354554-91358468:+|nuORF REV__ENST00000355112.7_1_15:91354554-91358468:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2134399414062 3 376.213586 1125.61893 0.045821 1.7239E-05 -0.065056 -2.4475E-05 -0.019234 -7.2363E-06 376.21337022723594 54.32 0.56253 54.253 53.941 54.504 -0.066936 83 27 4 0 0 0 0.71276 1 29452 29452 0.62683 0 1 26969000 + 16089 25801 11026 11232 19205 19205 0.061145210537461026 GKPRLKIYL 9 Unmodified _GKPRLKIYL_ 0 0 0 ENST00000419462.1_1_8:102381113-102381542:+|nuORF ENST00000419462.1_1_8:102381113-102381542:+|nuORF ENST00000419462.1_1_8:102381113-102381542:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.351318359375 2 544.352951 1086.69135 -0.59778 -0.0003254 -0.44765 -0.00024368 -1.0454 -0.00056908 544.3525815172832 105.08 0.066513 105.04 105.01 105.07 -0.048729 32 16 3 0 0 0 0.61381 1 58321 58321 0.52476 0 1 7959100 16090 13090 11027 11233 19206 19206 0.15147178398956385 GKPSEKRSL 9 Unmodified _GKPSEKRSL_ 0 0 0 REV__nc|ENSG00000198363|Q12797-4|ASPH REV__nc|ENSG00000198363|Q12797-4|ASPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.290283203125 2 501.290548 1000.56654 0.22573 0.00011315 0.54629 0.00027385 0.77201 0.000387 501.2905198714955 73.542 1.0454 73.586 73.05 74.096 0.043976 89 48 3 0 0 0 0.54444 1 40397 40397 4.756 4.756 1 3094700 + 16091 29896 11028 11234 19207 19207 0.06628261191792717 GKPVSLSSTCY 11 Unmodified _GKPVSLSSTCY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.4951782226562 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 79.901 1 79.412 78.912 79.912 -0.48932 0 0 0 0.94165 1 43764 43764 0.45452 0 1 16092 1378 11029 11235 19208 19208 -0.016142418452318452 GKPWGVVFL 9 Unmodified _GKPWGVVFL_ 0 0 0 REV__ENST00000430974.6_1_6:133562627-133562813:+|nuORF REV__ENST00000430974.6_1_6:133562627-133562813:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2914123535156 2 501.792195 1001.56984 0.077927 3.9103E-05 1.1044 0.00055417 1.1823 0.00059327 501.7927035476783 72.282 0.31458 72.324 72.256 72.571 0.041725 20 14 2 0 0 0 0.21819 1 39902 39902 0.52476 0.52476 1 1793900 + 16093 26972 11030 11236 19209 19209 0.06911556036470756 GKQYFSYSFL 10 Unmodified _GKQYFSYSFL_ 0 0 0 ENST00000524795.5_1_15:66587446-66615029:+|nuORF ENST00000524795.5_1_15:66587446-66615029:+|nuORF ENST00000524795.5_1_15:66587446-66615029:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2088928222656 3 413.873001 1238.59717 -0.25173 -0.00010419 2.1188 0.00087692 1.8671 0.00077274 414.2085477793566 34.126 0.3521 33.934 33.694 34.046 -0.19131 40 13 5 0 0 0 0.69064 1 17786 17786 1.9064 0.83491 1 3387600 16094 14785 11031 11237 19210 19210 -0.012580052137991515 GKRSRRAILL 10 Unmodified _GKRSRRAILL_ 0 0 0 REV__ENSG00000165029|ENST00000374736|ABCA1 REV__ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3856811523438 2 585.383106 1168.75166 1.5152 0.00088699 0.9268 0.00054253 2.442 0.0014295 585.8852528588274 104.85 0.14932 98.669 98.57 98.719 -6.1757 26 16 2 0 0 0 0.71276 1 70152 70152 1.4819 0 1 6553800 + 16095 21973 11032 11238 19211 19211 0.17403288782088566 GKSKIKMF 8 Unmodified _GKSKIKMF_ 0 0 0 REV__ENST00000496424.2_1_10:78317055-78317133:+|nuORF REV__ENST00000496424.2_1_10:78317055-78317133:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.2489013671875 2 469.778231 937.541908 1.5386 0.00072281 -0.36933 -0.0001735 1.1693 0.00054931 469.7780120624992 82.012 0.31473 82.074 81.981 82.296 0.061996 20 12 2 0 0 0 8.7369 1 45470 45470 2.5775 1.7838 1 6241500 + 16096 27963 11033 11239 19212 19212 0.07063909784722 GKSRKILG 8 Unmodified _GKSRKILG_ 0 0 0 REV__ENSG00000214013|ENST00000318010|GANC REV__ENSG00000214013|ENST00000318010|GANC MSMS AL20221201_MKP_PDAC_01 4 429.780517578125 2 429.779619 857.544686 NaN NaN NaN NaN NaN NaN NaN 105.86 1 99.688 99.188 100.19 -6.1757 0 0 0 0.97444 1 70900 70900 0.6015 0 1 + 16097 24303 11034 11240 19213 19213 0.11021501233904019 GKTAFEIYAYG 11 Unmodified _GKTAFEIYAYG_ 0 0 0 REV__ENSG00000205022|ENST00000419291|PABPN1L REV__ENSG00000205022|ENST00000419291|PABPN1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.8045654296875 2 610.303321 1218.59209 -0.17498 -0.00010679 -1.002 -0.00061152 -1.177 -0.00071831 610.3028104561914 53.625 0.1547 53.562 53.481 53.635 -0.063423 16 10 2 0 0 0 0.50268 1 29093 29093 20.415 5.5763 1 13603000 + 16098 24210 11035 11241 19214 19214 -0.008463090764280423 GKTLFFVVW 9 Unmodified _GKTLFFVVW_ 0 0 0 ENST00000463205.2_1_2:202503640-202507349:-|nuORF ENST00000463205.2_1_2:202503640-202507349:-|nuORF ENST00000463205.2_1_2:202503640-202507349:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7951049804688 2 548.813128 1095.6117 0.20223 0.00011098 0.20806 0.00011419 0.41028 0.00022517 548.8133249661157 79.655 0.14748 79.71 79.647 79.795 0.05497 9 5 2 0 0 0 0.18882 1 43993 43993 15.847 5.7733 1 851920 16099 13691 11036 11242 19215 19215 0.06772111724990282 GKVDAKFSNM 10 Unmodified _GKVDAKFSNM_ 0 0 0 REV__nc|ENSG00000162267|Q06033-2|ITIH3 REV__nc|ENSG00000162267|Q06033-2|ITIH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1867370605469 3 366.186703 1095.53828 1.3651 0.00049989 -0.15441 -5.6545E-05 1.2107 0.00044335 366.1865656664075 41.152 0.36834 36.545 36.353 36.722 -4.6079 41 22 2 0 0 0 0.66569 1 24637 24637 3.5871 0 1 20459000 + 16100 21631 11037 11243 19216 19216 -0.0056680477980535215 GKVDVKPG 8 Unmodified _GKVDVKPG_ 0 0 0 REV__ENSG00000124942|ENST00000378024|AHNAK REV__ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2369079589844 2 400.237253 798.459953 -0.77872 -0.00031167 1.1175 0.00044728 0.33883 0.00013561 400.2372848129967 104.59 0.043922 104.54 104.51 104.55 -0.048737 8 3 3 0 0 0 0.80763 1 58075 58075 2.0598 0 1 7250800 + 16101 19475 11038 11244 19217 19217 0.052661306972822786 GKVDVKPG 8 Unmodified _GKVDVKPG_ 0 0 0 REV__ENSG00000124942|ENST00000378024|AHNAK REV__ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 400.237253 798.459953 -0.77872 -0.00031167 1.1175 0.00044728 0.33883 0.00013561 400.2372848129967 104.59 0.043922 104.54 104.51 104.55 -0.048737 0 0 NaN 2.0598 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 7250800 + 16102 19475 11038 11244 0.052661306972822786 GKVVIDPD 8 Unmodified _GKVVIDPD_ 0 0 0 REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3 REV__nc|ENSG00000068137|Q7Z736-4|PLEKHH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.4853515625 2 421.734543 841.454533 NaN NaN NaN NaN NaN NaN NaN 17.567 1 17.572 17.072 18.072 0.0050564 0 0 0 0.97444 1 8866 8866 2.3027 1.5091 1 + 16103 17433 11039 11245 19218 19218 0.027464071148074254 GKYEIHTWY 9 Unmodified _GKYEIHTWY_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A ENSG00000083168|ENST00000265713|KAT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2882080078125 2 598.790381 1195.56621 0.15439 9.2448E-05 3.7069 0.0022197 3.8613 0.0023121 598.7954277364133 51.159 0.71825 50.746 50.438 51.156 -0.41351 88 36 4 0 0 0 0.41742 1 27640 27640 11.64 0.84079 1 20392000 16104 1360 11040 11246 19219 19219 -0.02375158528047905 GKYNLQMKQLH 11 Unmodified _GKYNLQMKQLH_ 0 0 0 REV__ENSG00000212128|ENST00000390677|TAS2R13 REV__ENSG00000212128|ENST00000390677|TAS2R13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.5798950195312 3 453.911573 1358.71289 0.47553 0.00021585 2.3085 0.0010479 2.784 0.0012637 453.91298199954053 21.78 0.18353 21.794 21.692 21.876 0.013796 22 10 3 0 0 0 0.71036 1 11169 11169 1.3296 0.55311 1 1533100 + 16105 24267 11041 11247 19220 19220 0.047881953654041354 GLAAGGIVAV 10 Unmodified _GLAAGGIVAV_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.4990844726562 1 827.498529 826.491253 0.2432 0.00020124 0.23008 0.00019039 0.47328 0.00039164 827.4986946395351 60.902 0.351 60.902 60.718 61.069 0 25 14 2 0 0 0 0.34789 1 33906 33906 24.674 6.5389 1 2497500 16106 9464 11042 11248 19221 19221 0.07106703731369635 GLAAGGIVAV 10 Unmodified _GLAAGGIVAV_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2528381347656 2 414.252903 826.491253 0.2518 0.00010431 -0.39486 -0.00016357 -0.14307 -5.9265E-05 414.252805477794 60.888 0.55515 60.888 60.514 61.069 0 44 23 3 0 0 0 0.22102 1 33945 33945 32.117 0 1 2234100 16107 9464 11042 11248 19222 19222 0.07106703731369635 GLAAGGIVAV 10 Unmodified _GLAAGGIVAV_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2528991699219 2 414.252903 826.491253 -0.20735 -8.5895E-05 0.14445 5.984E-05 -0.062897 -2.6055E-05 414.25310796911003 61.352 0.33707 60.862 60.735 61.072 -0.48932 25 15 3 0 0 0 0.14518 1 33407 33407 40.449 8.3316 1 1897300 16108 9464 11042 11248 19223 19223 0.07106703731369635 GLAAGGIVAV 10 Unmodified _GLAAGGIVAV_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 827.500244140625 1 827.498529 826.491253 1.0345 0.00085602 -0.26405 -0.0002185 0.77042 0.00063752 827.4983047248815 68.757 0.41734 62.581 62.365 62.782 -6.1757 37 22 2 0 0 0 0.086532 1 44788 44788 49.669 0 1 24352000 16109 9464 11042 11248 19224 19224 0.07106703731369635 GLAAGGIVAV 10 Unmodified _GLAAGGIVAV_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 827.498529 826.491253 -0.66201 -0.00054781 1.1685 0.00096694 0.5065 0.00041913 827.4992728050391 61.337 0.29486 60.847 60.715 61.009 -0.48932 -0.027235 0.00049893 NaN 24.674 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3539900 16110 9464 11042 11248 0.07106703731369635 GLAAKLGPP 9 Unmodified _GLAAKLGPP_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2555236816406 2 412.255446 822.496338 NaN NaN NaN NaN NaN NaN NaN 30.608 1 30.608 30.108 31.108 0 0 0 0 0.70111 1 15908 15908 9.3474 0 1 16111 1692 11043 11249 19225 19225 0.07799007593996521 GLAALAVHL 9 Unmodified _GLAALAVHL_ 0 0 0 ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA ENSG00000187741|ENST00000389301|FANCA ENSG00000187741|ENST00000389301|FANCA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849792480469 2 432.76872 863.522887 0.2065 8.9366E-05 0.75966 0.00032876 0.96616 0.00041812 432.7685934332096 68.924 0.21959 68.443 68.309 68.528 -0.48071 12 9 2 0 0 0 0.18941 1 37688 37688 14.582 4.3983 1 839790 16112 9590 11044 11250 19226 19226 0.08566696485331704 GLAAVFDTV 9 Unmodified _GLAAVFDTV_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 892.47900390625 1 892.47746 891.470183 -1.417 -0.0012646 2.4981 0.0022295 1.0812 0.00096491 892.4797307776652 77.669 0.18684 77.186 77.082 77.269 -0.4826 11 7 2 0 0 0 0.16776 1 42517 42517 26.341 6.9023 1 491770 16113 367 11045 11251 19227 19227 0.020106936318597946 GLAAVNVSYFF 11 Unmodified _GLAAVNVSYFF_ 0 0 0 ENSG00000145934|ENST00000518659|TENM2;nc|ENSG00000145934|Q9NT68-2|TENM2 ENSG00000145934|ENST00000518659|TENM2 ENSG00000145934|ENST00000518659|TENM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.31005859375 2 594.308406 1186.60226 0.79923 0.00047499 0.39033 0.00023197 1.1896 0.00070696 594.3084532468282 74.798 0.24681 74.322 74.207 74.454 -0.47588 20 9 3 0 0 0 0.65846 1 40953 40953 8.1555 0.8663 1 832180 16114 5741 11046 11252 19228 19228 0.016422986487896196 GLADASLLKKV 11 Unmodified _GLADASLLKKV_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.232421875 3 372.23253 1113.67576 0.80731 0.00030051 -0.63427 -0.00023609 0.17305 6.4414E-05 372.23217071811297 49.931 0.2552 49.538 49.395 49.65 -0.3923 27 12 3 0 0 0 0.22582 1 26863 26863 25.155 14.09 1 5082900 16115 15906 11047 11253 19229 19229 0.12346847091271229 GLADASLLKKV 11 Unmodified _GLADASLLKKV_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.23253 1113.67576 0.81162 0.00030211 -0.75483 -0.00028097 0.056796 2.1141E-05 372.23244533245565 49.591 0.21421 49.542 49.431 49.645 -0.048828 0.054724 -0.00038969 NaN 25.155 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2084900 16116 15906 11047 11253 0.12346847091271229 GLADASLLKKV 11 Unmodified _GLADASLLKKV_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 372.23253 1113.67576 1.7084 0.00063593 -0.042626 -1.5867E-05 1.6658 0.00062006 372.2324714568796 55.303 0.37907 49.382 49.208 49.587 -5.9211 -0.10533 0.00040562 NaN 25.155 42 23 2 NaN NaN NaN NaN 0 NaN NaN 0 23010000 16117 15906 11047 11253 0.12346847091271229 GLADITQQL 9 Unmodified _GLADITQQL_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7662048339844 2 479.763832 957.513111 1.1351 0.00054457 1.6809 0.00080643 2.816 0.001351 479.76441347469864 71.98 0.28265 65.804 65.637 65.919 -6.1757 27 15 2 0 0 0 0.023164 1 47064 47064 60.39 2.9182 1 24538000 16118 7592 11048 11254 19230 19230 0.032654636892857525 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2867431640625 2 513.286943 1024.55933 0.24745 0.00012701 -0.41385 -0.00021242 -0.1664 -8.5409E-05 513.286685089034 70.752 0.37878 70.275 70.104 70.483 -0.47735 57 20 4 0 0 0 0.025842 2 38752 38643;38752 57.722 25.416 1 10522000 16119 1399 11049 11255 19231;19232 19232 0.04803528591378381 GLADKVYFL 9 Unmodified _GLADKVYFL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.286865234375 2 513.286943 1024.55933 0.71245 0.00036569 0.47211 0.00024233 1.1846 0.00060802 513.2866686649586 70.168 0.32354 70.203 70.055 70.379 0.035515 26 15 2 0 0 0 0.047788 1 38606 38606 45.7 9.5726 1 5268800 16120 1399 11049 11255 19233 19233 0.04803528591378381 GLADNTVIAKV 11 Unmodified _GLADNTVIAKV_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1 ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.819091796875 2 550.819138 1099.62372 0.65027 0.00035818 0.098616 5.4319E-05 0.74888 0.0004125 550.8191950097192 49.238 0.22407 49.238 49.128 49.352 0 17 10 2 0 0 0 0.42115 1 27087 27087 30.703 5.7125 1 3387800 16121 2966 11050 11256 19234 19234 0.07789683677492576 GLADQAAKLSY 11 Unmodified _GLADQAAKLSY_ 0 0 0 ENSG00000277363|ENST00000617146|SRCIN1 ENSG00000277363|ENST00000617146|SRCIN1 ENSG00000277363|ENST00000617146|SRCIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8010864257812 2 568.800946 1135.58734 0.71727 0.00040798 1.5432 0.00087779 2.2605 0.0012858 568.8011769155834 36.763 0.26917 36.763 36.628 36.897 0 35 12 4 0 0 0 0.65108 1 19595 19595 8.7454 0.83525 1 20051000 16122 10922 11051 11257 19235 19235 0.024968067808231353 GLADRCPAL 9 Carbamidomethyl (C) _GLADRC(Carbamidomethyl (C))PAL_ GLADRC(1)PAL GLADRC(46)PAL 0 1 0 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7521057128906 2 486.750201 971.48585 1.4851 0.00072286 -2.1681 -0.0010553 -0.68303 -0.00033247 486.74886027727956 41.824 0.59994 37.216 36.936 37.536 -4.6079 106 37 4 0 0 0 0.047788 1 25163 25163 45.7 17.213 1 28479000 16123 2525 11052 11258 19236 19236 258 -0.0010334312273698743 GLADTHPFL 9 Unmodified _GLADTHPFL_ 0 0 0 ENST00000356300.8_1_14:24047826-24047979:-|nuORF ENST00000356300.8_1_14:24047826-24047979:-|nuORF ENST00000356300.8_1_14:24047826-24047979:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7532043457031 2 485.753267 969.491981 0.59267 0.00028789 -0.07722 -3.751E-05 0.51545 0.00025038 485.75322384062815 53.602 0.33879 53.151 52.922 53.261 -0.45173 43 16 3 0 0 0 0.28047 1 29069 29069 18.135 7.9516 1 8361300 16124 12089 11053 11259 19237 19237 0.006014983804220719 GLAEAVLEA 9 Unmodified _GLAEAVLEA_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7396850585938 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 59.315 1 59.315 58.815 59.815 0 0 0 0 0.46757 1 33045 33045 16.942 1.0951 1 16125 10955 11054 11260 19238 19238 0.024223897692422725 GLAEDSPKM 9 Oxidation (M) _GLAEDSPKM(Oxidation (M))_ GLAEDSPKM(1) GLAEDSPKM(56) 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2266540527344 2 482.226225 962.437897 -0.37499 -0.00018083 0.47718 0.00023011 0.10219 4.9281E-05 482.2265685754298 17.318 0.45103 17.318 17.025 17.476 0 258 96 3 0 0 0 0.028475 2 8467 8467;8565 56.177 18.026 1 3390400 16126 8367 11055 11261 19239;19240 19239 1417 -0.04482461833435991 GLAEDSPKM 9 Oxidation (M) _GLAEDSPKM(Oxidation (M))_ GLAEDSPKM(1) GLAEDSPKM(65) 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2264099121094 2 482.226225 962.437897 0.91016 0.0004389 -0.6107 -0.00029449 0.29947 0.00014441 482.2260329701111 18.827 0.37972 16.205 16.043 16.423 -2.6215 64 27 3 0 0 0 0.018301 2 9987 9882;9987 65.235 25.278 1 16396000 16127 8367 11055 11261 19241;19242 19242 1417 -0.04482461833435991 GLAEDSPKM 9 Unmodified _GLAEDSPKM_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2281188964844 2 474.228768 946.442982 -0.58451 -0.00027719 0.3901 0.000185 -0.19441 -9.2195E-05 474.22899950418935 28.131 0.18282 28.131 28.048 28.231 0 18 10 2 0 0 0 0.028475 1 14500 14500 56.177 20.133 1 1437600 16128 8367 11055 11262 19243 19243 -0.0323815797082716 GLAEDSPKM 9 Unmodified _GLAEDSPKM_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.228759765625 2 474.228768 946.442982 0.96704 0.0004586 -0.1559 -7.393E-05 0.81114 0.00038467 474.228829905262 32.489 0.43162 28.633 28.401 28.832 -3.8562 65 23 4 0 0 0 0.018301 2 18466 18466;18593 65.235 28.769 1 53665000 16129 8367 11055 11262 19244;19245 19244 -0.0323815797082716 GLAEFQENV 9 Unmodified _GLAEFQENV_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25 ENSG00000152253|ENST00000282074|SPC25 ENSG00000152253|ENST00000282074|SPC25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7455139160156 2 503.745639 1005.47673 0.72035 0.00036287 -0.06306 -3.1766E-05 0.65729 0.00033111 503.74535294937505 51.55 0.21095 51.55 51.431 51.642 0 19 9 3 0 0 0 0.18465 1 28496 28496 24.674 6.5389 1 3479700 16130 6174 11056 11263 19246 19246 -0.02579413207433845 GLAEHLYLA 9 Unmodified _GLAEHLYLA_ 0 0 0 ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF ENST00000487209.5_1_1:43830638-43833598:-|nuORF ENST00000487209.5_1_1:43830638-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7681579589844 2 493.768917 985.523281 0.29569 0.000146 -0.32669 -0.00016131 -0.031001 -1.5307E-05 493.7687087275286 54.812 0.35754 54.345 54.182 54.54 -0.46664 58 17 5 0 0 0 0.03327 1 29666 29666 53.576 19.473 1 58105000 16131 14044 11057 11264 19247 19247 0.0299407141451411 GLAEHLYLA 9 Unmodified _GLAEHLYLA_ 0 0 0 ENST00000487209.5_1_1:43830638-43833598:-|nuORF;ENST00000479686.5_1_1:43830638-43833178:-|nuORF ENST00000487209.5_1_1:43830638-43833598:-|nuORF ENST00000487209.5_1_1:43830638-43833598:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7694091796875 2 493.768917 985.523281 1.1615 0.00057352 -0.21914 -0.00010821 0.94238 0.00046532 493.76878627609267 60.788 0.51641 54.64 54.462 54.978 -6.1478 72 27 4 0 0 0 0.013472 3 39174 39051;39174;39304 70.716 35.038 1 151140000 16132 14044 11057 11264 19248;19249;19250 19249 0.0299407141451411 GLAEILVLV 9 Unmodified _GLAEILVLV_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7998657226562 2 463.799686 925.584819 0.67093 0.00031118 -0.55205 -0.00025604 0.11888 5.5137E-05 463.79956743622046 101.88 0.094482 95.709 95.662 95.757 -6.1757 10 4 3 0 0 0 0.03327 1 68404 68404 53.576 0 1 15916000 16133 6856 11058 11265 19251 19251 0.119050031137931 GLAELYVMV 9 Unmodified _GLAELYVMV_ 0 0 0 ENSG00000244045|ENST00000292114|TMEM199 ENSG00000244045|ENST00000292114|TMEM199 ENSG00000244045|ENST00000292114|TMEM199 MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.5279541015625 1 994.527781 993.520504 0.26583 0.00026438 0.5486 0.00054559 0.81443 0.00080997 994.528057022761 99.72 0.1276 93.544 93.46 93.588 -6.1757 12 7 2 0 0 0 0.052168 1 66466 66466 44.407 6.433 1 44160000 16134 10724 11059 11266 19252 19252 0.023484799653488153 GLAERISVL 9 Unmodified _GLAERISVL_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2897338867188 2 479.290017 956.565481 NaN NaN NaN NaN NaN NaN NaN 55.647 1 55.647 55.147 56.147 0 0 0 0 0.34649 1 30920 30920 22.736 0 1 16135 2299 11060 11267 19253 19253 0.0854604682289164 GLAERISVL 9 Unmodified _GLAERISVL_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2890625 2 479.290017 956.565481 -0.32754 -0.00015699 -0.58739 -0.00028153 -0.91493 -0.00043852 479.2897173127091 56.014 0.25729 55.533 55.419 55.676 -0.4809 22 12 2 0 0 0 0.029718 1 30385 30385 55.503 11.644 1 4301300 16136 2299 11060 11267 19254 19254 0.0854604682289164 GLAEVAAAV 9 Unmodified _GLAEVAAAV_ 0 0 0 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 ENSG00000170684|ENST00000303809|ZNF296 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.45166015625 1 800.451245 799.443968 0.35577 0.00028477 -0.24316 -0.00019464 0.11261 9.0135E-05 800.4510466180983 54.795 0.23275 54.795 54.664 54.897 0 14 9 2 0 0 0 0.0094915 1 30431 30431 81.864 7.4413 1 2733800 16137 8015 11061 11268 19255 19255 0.03622424460365892 GLAGDRVF 8 Unmodified _GLAGDRVF_ 0 0 0 ENST00000465230.5_1_2:220471080-220471347:+|nuORF ENST00000465230.5_1_2:220471080-220471347:+|nuORF ENST00000465230.5_1_2:220471080-220471347:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.7267456054688 2 417.727052 833.439552 0.63611 0.00026572 -0.78463 -0.00032776 -0.14853 -6.2044E-05 417.72671976334084 62.562 0.33165 62.075 61.894 62.226 -0.48764 41 15 4 0 0 0 0.61462 1 34143 34143 24.674 2.9272 1 16126000 16138 13733 11062 11269 19256 19256 0.016169600374723814 GLAGFLFTVF 10 Unmodified _GLAGFLFTVF_ 0 0 0 nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-2|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.296630859375 2 536.29731 1070.58007 0.28465 0.00015266 -0.34675 -0.00018596 -0.062094 -3.3301E-05 536.2968847462714 79.355 0.26673 79.41 79.257 79.523 0.05497 18 9 3 0 0 0 0.37389 1 43883 43883 23.148 6.2061 1 2095400 16139 6314 11063 11270 19257 19257 0.047601189710576364 GLAGFLFTVF 10 Unmodified _GLAGFLFTVF_ 0 0 0 nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-2|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10 nc|ENSG00000154263|Q8WWZ4-5|ABCA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2987060546875 2 536.29731 1070.58007 1.1232 0.00060235 1.4247 0.00076409 2.5479 0.0013664 536.2979696908038 97.913 0.18626 91.738 91.614 91.8 -6.1757 22 11 3 0 0 0 0.1131 1 64901 64901 44.407 0 1 11003000 16140 6314 11063 11270 19258 19258 0.047601189710576364 GLAGVKIAEV 10 Unmodified _GLAGVKIAEV_ 0 0 0 nc|ENSG00000239264|Q8NBS9-2|TXNDC5;ENSG00000239264|ENST00000379757|TXNDC5 nc|ENSG00000239264|Q8NBS9-2|TXNDC5 nc|ENSG00000239264|Q8NBS9-2|TXNDC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2104797363281 2 478.792392 955.570232 0.56269 0.00026941 -0.40209 -0.00019252 0.1606 7.6896E-05 478.7922262200689 50.824 0.25169 50.824 50.744 50.996 0 28 15 2 0 0 0 0.23489 1 28075 28075 8.7454 2.985 1 7433900 16141 10659 11064 11271 19259 19259 0.09066930965650499 GLAHLAAPGL 10 Unmodified _GLAHLAAPGL_ 0 0 0 REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2707824707031 2 460.271627 918.528701 -0.39573 -0.00018215 0.035974 1.6558E-05 -0.35976 -0.00016559 460.27134614642364 34.566 0.24976 34.374 34.291 34.541 -0.19131 17 11 2 0 0 0 0.46535 1 18104 18104 18.135 5.6034 1 2144600 + 16142 22598 11065 11272 19260 19260 0.0661779499697559 GLAKAVASV 9 Unmodified _GLAKAVASV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 408.2067260742188 2 408.252903 814.491253 1.354 0.00055279 -1.0751 -0.00043891 0.27896 0.00011388 408.25231548866924 37.608 0.36626 33.239 33.071 33.437 -4.3689 32 21 2 0 0 0 0.069627 1 22158 22158 37.974 7.7492 1 16156000 16143 8835 11066 11273 19261 19261 0.07658703731374317 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENSG00000168496|ENST00000305885|FEN1 ENSG00000168496|ENST00000305885|FEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2825012207031 2 450.28166 898.548768 0.48914 0.00022025 -0.59322 -0.00026712 -0.10409 -4.6868E-05 450.2813867903766 62.723 0.26348 62.236 62.082 62.346 -0.48617 22 12 3 0 0 0 0.023481 1 34164 34164 60.074 23.947 1 7037000 16144 7771 11067 11274 19262 19262 0.09543545936935516 GLAKLIADV 9 Unmodified _GLAKLIADV_ 0 0 0 ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENSG00000168496|ENST00000305885|FEN1 ENSG00000168496|ENST00000305885|FEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2819213867188 2 450.28166 898.548768 1.3142 0.00059175 -0.26732 -0.00012037 1.0469 0.00047138 450.28151036921963 91.813 0.50275 85.637 85.351 85.853 -6.1757 42 28 2 0 0 0 0.014417 2 60684 60684;60804 69.105 23.084 1 12685000 16145 7771 11067 11274 19263;19264 19263 0.09543545936935516 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7922973632812 2 478.792392 955.570232 -0.10246 -4.9058E-05 -0.035153 -1.6831E-05 -0.13761 -6.5889E-05 478.7923322945533 48.362 0.38573 48.362 48.193 48.579 0 56 18 4 0 0 0 0.0090524 2 26470 26470;26580 85.642 43.802 1 173830000 16146 4346 11068 11275 19265;19266 19265 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7927551269531 2 478.792392 955.570232 0.47386 0.00022688 -0.35585 -0.00017038 0.118 5.65E-05 478.79191837309236 48.567 0.38629 48.196 48.021 48.407 -0.37172 44 20 3 0 0 0 0.0044708 2 26016 26016;26123 118.89 60.216 1 28159000 16147 4346 11068 11275 19267;19268 19267 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7924499511719 2 478.792392 955.570232 0.4096 0.00019611 0.34793 0.00016659 0.75753 0.0003627 478.79226604571693 48.254 0.20316 48.215 48.083 48.286 -0.038647 21 9 3 0 0 0 0.010611 1 26007 26007 78.728 38.771 1 3288400 16148 4346 11068 11275 19269 19269 0.09066930965661868 GLALKVQEV 9 Unmodified _GLALKVQEV_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7928161621094 2 478.792392 955.570232 1.3252 0.00063449 -0.065596 -3.1407E-05 1.2596 0.00060308 478.79232445937373 54.14 0.58604 48.275 48.005 48.591 -5.8653 104 34 4 0 0 0 0.0017364 3 34316 34184;34316;34457 134.3 56.146 1 375980000 16149 4346 11068 11275 19270;19271;19272 19271 0.09066930965661868 GLALVIPDAI 10 Unmodified _GLALVIPDAI_ 0 0 0 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.7850341796875 2 491.302593 980.590633 1.4543 0.00071448 -0.63489 -0.00031192 0.81937 0.00040256 491.30214905567254 97.454 0.16391 91.278 91.186 91.349 -6.1757 12 8 2 0 0 0 0.22327 1 64546 64546 12.532 0 1 7085200 + 16150 29682 11069 11276 19273 19273 0.09956101625448355 GLANEFATF 9 Unmodified _GLANEFATF_ 0 0 0 REV__ENSG00000198677|ENST00000358746|SKIC3 REV__ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.4743041992188 1 969.467623 968.460347 0.3143 0.0003047 -0.31471 -0.00030511 -0.00041816 -4.0539E-07 969.4672369015898 67.887 0.37933 67.887 67.697 68.076 0 39 18 3 0 0 0 0.53666 1 37842 37842 5.2307 0 1 4257400 + 16151 24037 11070 11277 19274 19274 -0.025144943735313063 GLANLTAEL 9 Unmodified _GLANLTAEL_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 901.4977416992188 1 901.498923 900.491647 -0.25553 -0.00023036 0.56644 0.00051065 0.31092 0.00028029 901.4995395346737 71.506 0.23015 71.506 71.442 71.672 0 13 9 2 0 0 0 0.14602 1 39830 39830 28.487 5.3384 1 407090 16152 9403 11071 11278 19275 19275 0.03742078660570769 GLAPKPVQV 9 Unmodified _GLAPKPVQV_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7821350097656 2 454.781828 907.549102 1.3064 0.00059412 -0.29046 -0.0001321 1.0159 0.00046203 454.7816484819103 41.938 0.33858 37.285 37.098 37.437 -4.6533 35 21 2 0 0 0 0.012148 1 25239 25239 74.423 38.296 1 6744900 16153 6755 11072 11279 19276 19276 0.0916296565679886 GLAPLEVRV 9 Unmodified _GLAPLEVRV_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.292236328125 2 477.292559 952.570566 0.30894 0.00014745 -0.67122 -0.00032037 -0.36229 -0.00017292 477.29222567619564 59.984 0.23304 59.493 59.333 59.566 -0.49079 19 11 2 0 0 0 0.07087 1 32635 32635 39.95 14.55 1 3718600 16154 16209;15895 11073 11280 19277 19277 0.09238350685518526 GLAPLEVRV 9 Unmodified _GLAPLEVRV_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 477.292559 952.570566 0.2567 0.00012252 -0.05679 -2.7105E-05 0.19991 9.5418E-05 477.2923281364836 65.663 0.44368 59.487 59.184 59.628 -6.1757 -0.0031647 0.00039771 NaN 39.95 33 25 2 NaN NaN NaN NaN 0 NaN NaN 0 15284000 16155 16209;15895 11073 11280 0.09238350685518526 GLAPLHIQL 9 Unmodified _GLAPLHIQL_ 0 0 0 ENSG00000126903|ENST00000651600|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2941284179688 2 481.295102 960.575651 0.73382 0.00035319 -0.5888 -0.00028339 0.14502 6.98E-05 481.2945953738252 72.551 0.22928 72.075 71.938 72.167 -0.47609 19 10 2 0 0 0 0.12841 1 39720 39720 30.225 7.7722 1 1051000 16156 3980 11074 11281 19278 19278 0.0937865454814073 GLAPLHIQL 9 Unmodified _GLAPLHIQL_ 0 0 0 ENSG00000126903|ENST00000651600|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2965393066406 2 481.295102 960.575651 0.47526 0.00022874 1.3913 0.00066963 1.8666 0.00089837 481.29581039773257 72.018 0.19924 72.057 71.893 72.092 0.039024 16 9 2 0 0 0 0.023164 1 39650 39650 60.39 23.923 1 1860700 16157 3980 11074 11281 19279 19279 0.0937865454814073 GLAPSLGTLL 10 Unmodified _GLAPSLGTLL_ 0 0 0 REV__ENST00000325110.10_1_5:43298218-43298655:-|nuORF REV__ENST00000325110.10_1_5:43298218-43298655:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 943.5719604492188 1 941.566609 940.559333 -0.085342 -8.0355E-05 1.1542 0.0010868 1.0689 0.0010064 941.5675486930317 61.529 0.32227 61.04 60.858 61.18 -0.48932 27 14 3 0 0 0 0.70951 1 33541 33541 1.8442 1.8442 1 3718900 + 16158 25548 11075 11282 19280 19280 0.08667528591399787 GLAQPDSVSI 10 Unmodified _GLAQPDSVSI_ 0 0 0 ENSG00000108700|ENST00000394620|CCL8 ENSG00000108700|ENST00000394620|CCL8 ENSG00000108700|ENST00000394620|CCL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7610778808594 2 493.761289 985.508025 -0.13943 -6.8846E-05 -0.12469 -6.1565E-05 -0.26412 -0.00013041 493.7611887155016 48.317 0.35938 48.317 48.132 48.491 0 43 17 3 0 0 0 0.1028 1 26571 26571 46.021 2.1627 1 43008000 16159 2599 11076 11283 19281 19281 0.014691598266608707 GLAQVITAV 9 Unmodified _GLAQVITAV_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.2660827636719 2 436.26601 870.517468 NaN NaN NaN NaN NaN NaN NaN 72.087 1 71.611 71.111 72.111 -0.47609 0 0 0 0.3092 1 39449 39449 24.674 6.5389 1 16160 7300 11077 11284 19282 19282 0.07702972902836791 GLAQVLTGI 9 Unmodified _GLAQVLTGI_ 0 0 0 REV__ENSG00000167580|ENST00000199280|AQP2 REV__ENSG00000167580|ENST00000199280|AQP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 871.5238647460938 1 871.524744 870.517468 -0.024535 -2.1383E-05 -0.18792 -0.00016378 -0.21246 -0.00018516 871.5244137259923 72.122 0.16139 71.646 71.525 71.686 -0.47609 10 6 2 0 0 0 0.39863 1 39486 39486 12.532 0 1 451620 + 16161 22221 11078 11285 19283 19283 0.07702972902836791 GLARFPHV 8 Unmodified _GLARFPHV_ 0 0 0 REV__nc|ENSG00000087269|P78316-2|NOP14 REV__nc|ENSG00000087269|P78316-2|NOP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7592163085938 2 448.758687 895.502821 NaN NaN NaN NaN NaN NaN NaN 73.336 1 73.336 72.836 73.836 0 0 0 0 0.97444 1 40826 40826 0.79363 0 1 + 16162 17784 11079 11286 19284 19284 0.05088945545367096 GLARLEAQL 9 Unmodified _GLARLEAQL_ 0 0 0 REV__ENSG00000047662|ENST00000265018|FAM184B REV__ENSG00000047662|ENST00000265018|FAM184B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7884826660156 2 485.787641 969.56073 0.71639 0.00034802 -0.091286 -4.4346E-05 0.62511 0.00030367 485.78759530738375 40.717 0.30811 40.414 40.254 40.563 -0.30304 39 14 4 0 0 0 0.047196 1 21491 21491 46.021 4.0654 1 16045000 + 16163 17234 11080 11287 19285 19285 0.07473162680128098 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2423095703125 2 452.242732 902.470912 -0.089056 -4.0275E-05 -0.27762 -0.00012555 -0.36668 -0.00016583 452.2425711423528 41.596 0.38257 41.596 41.422 41.804 0 56 19 4 0 0 0 0.023164 2 22377 22377;22495 60.39 14.369 1 182130000 16164 10927 11081 11288 19286;19287 19286 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4782104492188 1 903.478188 902.470912 -0.45329 -0.00040953 -0.10553 -9.5341E-05 -0.55881 -0.00050488 903.4781664269016 41.566 0.30974 41.566 41.441 41.751 0 41 15 3 0 0 0 0.0083938 2 22519 22396;22519 108 36.075 1 66445000 16165 10927 11081 11288 19288;19289 19289 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.24267578125 2 452.242732 902.470912 NaN NaN NaN NaN NaN NaN NaN 41.618 1 41.616 41.116 42.116 -0.0017929 0 0 0 0.086291 1 22251 22251 46.921 0.89992 1 16166 10927 11081 11288 19290 19290 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2430725097656 2 452.242732 902.470912 0.80762 0.00036524 0.0568 2.5687E-05 0.86442 0.00039093 452.2427130406908 49.163 0.5642 43.766 43.458 44.022 -5.3961 89 36 3 0 0 0 0.0088174 2 30536 30536;30673 103.75 25.599 1 484990000 16167 10927 11081 11288 19291;19292 19291 0.015774882809068913 GLATDVQTV 9 Unmodified _GLATDVQTV_ 0 0 0 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 ENSG00000277791|ENST00000619426|PSMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 903.479736328125 1 903.478188 902.470912 0.59625 0.0005387 -0.15043 -0.00013591 0.44582 0.00040279 903.4779447398314 49.15 0.49985 43.754 43.505 44.005 -5.3961 73 32 3 0 0 0 0.0082661 3 30811 30550;30684;30811 92.491 23.387 1 208420000 16168 10927 11081 11288 19293;19294;19295 19295 0.015774882809068913 GLATFPLR 8 Unmodified _GLATFPLR_ 0 0 0 REV__ENSG00000205220|ENST00000358514|PSMB10 REV__ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7608337402344 2 437.760895 873.507237 1.2975 0.00056801 -0.29837 -0.00013061 0.99917 0.0004374 437.76063241546456 89.378 1.0154 83.203 82.636 83.651 -6.1757 106 56 2 0 0 0 0.46494 1 59145 59145 38.151 2.107 1 27058000 + 16169 24216 11082 11289 19296 19296 0.06542409968278662 GLAVEGLLIL 10 Unmodified _GLAVEGLLIL_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 997.629638671875 1 997.629209 996.621933 0.23249 0.00023194 0.56729 0.00056595 0.79978 0.00079789 997.6299087888485 99.668 0.088486 99.51 99.437 99.525 -0.1575 4 2 2 0 0 0 0.092434 1 54413 54413 48.346 6.2513 1 1160400 + 16170 20671 11083 11290 19297 19297 0.12348674659574499 GLAVEGLLIL 10 Unmodified _GLAVEGLLIL_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3190612792969 2 499.318243 996.621933 1.4283 0.00071318 0.54529 0.00027227 1.9736 0.00098545 499.31856073180387 101.07 0.1084 94.899 94.831 94.939 -6.1757 14 5 3 0 0 0 0.031389 1 67741 67741 67.344 3.1075 1 55881000 + 16171 20671 11083 11290 19298 19298 0.12348674659574499 GLAVEGLLIL 10 Unmodified _GLAVEGLLIL_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 997.629209 996.621933 0.23249 0.00023194 0.56729 0.00056595 0.79978 0.00079789 997.6299087888485 99.668 0.088486 99.51 99.437 99.525 -0.1575 0 0 NaN 48.346 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1160400 + 16172 20671 11083 11290 0.12348674659574499 GLAVSLQLLH 10 Unmodified _GLAVSLQLLH_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8193359375 2 525.818941 1049.62333 0.020244 1.0644E-05 0.30074 0.00015813 0.32098 0.00016878 525.8189931022135 72.578 0.36224 72.62 72.42 72.782 0.041725 39 16 3 0 0 0 0.1028 1 39953 39953 46.021 1.6139 1 5963700 16173 4066 11084 11291 19299 19299 0.10050308748327552 GLCDSIITI 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))DSIITI_ GLC(1)DSIITI GLC(78)DSIITI 0 1 0 ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.513916015625 1 991.512859 990.505582 1.0481 0.0010392 0.29193 0.00028945 1.34 0.0013287 991.5135416473828 86.064 0.52195 79.889 79.674 80.196 -6.1757 54 28 3 0 0 0 0.010877 3 56616 56616;56743;56884 77.984 17.595 1 23486000 16174 2682 11085 11292 19300;19301;19302 19300 272 0.009949880973636027 GLCDSIITI 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))DSIITI_ GLC(1)DSIITI GLC(78)DSIITI 0 1 0 ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2604064941406 2 496.260068 990.505582 1.1757 0.00058343 0.37552 0.00018635 1.5512 0.00076979 496.2600795434927 86.101 0.666 79.925 79.547 80.213 -6.1757 88 36 4 0 0 0 0.010877 3 56620 56620;56748;56878 77.984 17.14 1 49507000 16175 2682 11085 11292 19303;19304;19305 19303 272 0.009949880973636027 GLCEDLRSC 9 2 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))EDLRSC(Carbamidomethyl (C))_ GLC(1)EDLRSC(1) GLC(53)EDLRSC(53) 0 2 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2391967773438 2 555.239341 1108.46413 1.0125 0.00056215 -0.68049 -0.00037784 0.33196 0.00018432 555.238763928883 34.798 0.3176 30.703 30.565 30.882 -4.0951 28 18 2 0 0 0 0.033587 1 20129 20129 53.404 7.7044 1 6354400 16176 4412 11086 11293 19306 19306 449;450 -0.08576515933600604 GLCERLVSL 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))ERLVSL_ GLC(1)ERLVSL GLC(89)ERLVSL 0 1 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7872924804688 2 523.786784 1045.55902 0.36578 0.00019159 -1.452 -0.00076053 -1.0862 -0.00056894 523.7873192758229 57.212 0.61829 56.723 56.304 56.923 -0.48974 88 28 5 0 0 0 0.0086209 1 31127 31127 89.401 26.828 1 18309000 16177 10766 11087 11294 19307 19307 951 0.03805785599865885 GLCERLVSL 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))ERLVSL_ GLC(1)ERLVSL GLC(80)ERLVSL 0 1 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7881469726562 2 523.786784 1045.55902 0.92693 0.00048551 -0.10512 -5.5058E-05 0.82181 0.00043046 523.7869178880917 63.09 0.6387 56.914 56.623 57.262 -6.1757 81 34 3 0 0 0 0.010301 3 40628 40628;40760;40894 79.596 25.764 1 184820000 16178 10766 11087 11294 19308;19309;19310 19308 951 0.03805785599865885 GLCERLVSL 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))ERLVSL_ GLC(1)ERLVSL GLC(70)ERLVSL 0 1 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.787109375 2 523.786784 1045.55902 0.70747 0.00037056 -2.2551 -0.0011812 -1.5476 -0.00081062 524.2860246398978 66.113 1.0916 59.937 59.382 60.473 -6.1757 99 63 2 0 0 0 0.013609 1 42792 42792 70.332 18.064 1 30160000 16179 10766 11087 11294 19311 19311 951 0.03805785599865885 GLCLDQKKW 9 Unmodified _GLCLDQKKW_ 0 0 0 REV__ENSG00000143512|ENST00000343410|HHIPL2 REV__ENSG00000143512|ENST00000343410|HHIPL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.1958618164062 3 364.19531 1089.5641 0.46766 0.00017032 1.164 0.00042394 1.6317 0.00059426 364.1956348081606 58.725 0.33378 58.664 58.505 58.839 -0.060722 47 16 4 0 0 0 0.21834 1 32083 32083 0.96228 0.26461 1 7697200 + 16180 20646 11088 11295 19312 19312 0.022900894624854118 GLCPHVVVL 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))PHVVVL_ GLC(1)PHVVVL GLC(80)PHVVVL 0 1 0 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2821044921875 2 497.281137 992.547722 1.4963 0.00074407 0.88492 0.00044005 2.3812 0.0011841 497.28180221907695 64.065 0.81619 57.89 57.634 58.45 -6.1757 110 44 4 0 0 0 0.01018 3 41352 41352;41481;41620 79.935 43.468 1 94443000 16181 1866 11089 11296 19313;19314;19315 19313 181 0.051150082963886234 GLCQCLVEL 9 2 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))QC(Carbamidomethyl (C))LVEL_ GLC(1)QC(1)LVEL GLC(54)QC(54)LVEL 0 2 0 ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2;ENST00000549572.5_1_12:53898463-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.26416015625 2 546.264827 1090.5151 0.65871 0.00035983 0.24493 0.0001338 0.90363 0.00049362 546.264597574088 80.477 0.38736 74.301 74.037 74.424 -6.1757 41 21 2 0 0 0 0.03327 2 52723 52723;52846 53.576 31.829 1 26907000 16182 5165 11090 11297 19316;19317 19316 527;528 -0.026535668887618158 GLCQRPASV 9 Carbamidomethyl (C) _GLC(Carbamidomethyl (C))QRPASV_ GLC(1)QRPASV GLC(52)QRPASV 0 1 0 nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2558288574219 2 494.255651 986.496749 0.54357 0.00026866 1.2237 0.0006048 1.7672 0.00087347 494.2558665198117 26.984 0.16957 23.947 23.816 23.985 -3.0365 10 8 2 0 0 0 0.036857 1 14933 14933 51.63 8.6618 1 6722300 16183 16302 11091 11298 19318 19318 1024 0.002960592515364624 GLDDIKDLKV 10 Unmodified _GLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.5481567382812 3 372.548406 1114.62339 -0.22233 -8.283E-05 0.097828 3.6446E-05 -0.1245 -4.6384E-05 372.5484036434834 51.919 0.3689 51.919 51.71 52.079 0 51 16 4 0 0 0 0.38026 1 28647 28647 22.775 11.257 1 83933000 16184 6383 11092 11299 19319 19319 0.0706626395767671 GLDDIKDLKV 10 Unmodified _GLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2545166015625 2 558.318971 1114.62339 0.12477 6.9662E-05 -1.0045 -0.00056082 -0.8797 -0.00049115 558.3184159704186 51.925 0.33017 51.925 51.73 52.06 0 34 14 3 0 0 0 0.10741 1 28736 28736 57.108 30.839 1 22579000 16185 6383 11092 11299 19320 19320 0.0706626395767671 GLDDIKDLKV 10 Unmodified _GLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.5484924316406 3 372.548406 1114.62339 0.54356 0.0002025 -1.851 -0.0006896 -1.3075 -0.0004871 372.547785695639 52.4 0.25415 51.966 51.789 52.044 -0.43367 36 12 4 0 0 0 0.47059 1 28276 28276 17.863 4.3445 1 17215000 16186 6383 11092 11299 19321 19321 0.0706626395767671 GLDDIKDLKV 10 Unmodified _GLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.319091796875 2 558.318971 1114.62339 0.91935 0.00051329 0.19639 0.00010965 1.1157 0.00062294 558.3189550490412 58.251 0.63845 52.221 51.987 52.625 -6.0294 70 34 4 0 0 0 0.0074124 2 37260 37260;37383 104.48 42.882 1 65857000 16187 6383 11092 11299 19322;19323 19322 0.0706626395767671 GLDDIKDLKV 10 Unmodified _GLDDIKDLKV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.318971 1114.62339 0.76389 0.0004265 1.5494 0.00086507 2.3133 0.0012916 558.3203345037991 52.345 0.11232 51.911 51.83 51.942 -0.43367 -0.10799 0.0021477 NaN 94.909 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1865400 16188 6383 11092 11299 0.0706626395767671 GLDEEVKTGF 10 Unmodified _GLDEEVKTGF_ 0 0 0 REV__ENST00000488613.1_1_2:74781881-74782348:+|nuORF REV__ENST00000488613.1_1_2:74781881-74782348:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7719116210938 2 547.771854 1093.52915 -0.03889 -2.1303E-05 -3.2247 -0.0017664 -3.2636 -0.0017877 547.7708490336087 52.01 0.73672 52.01 51.73 52.467 0 52 32 2 0 0 0 0.5905 1 28959 28959 11.64 0.81637 1 4832600 + 16189 27846 11093 11300 19324 19324 -0.01386874864465426 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2746276855469 2 510.274032 1018.53351 0.32481 0.00016574 -0.15623 -7.9719E-05 0.16859 8.6025E-05 510.2737483681163 87.81 0.30954 87.81 87.715 88.025 0 25 14 2 0 0 0 0.2001 1 48625 48625 23.148 6.2061 1 507860 16190 10102 11094 11301 19325 19325 0.024986343491036678 GLDELFVQV 9 Unmodified _GLDELFVQV_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1;nc|ENSG00000198522|Q9HCN4-3|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2735595703125 2 510.274032 1018.53351 0.24607 0.00012556 -0.48164 -0.00024577 -0.23557 -0.0001202 510.2737358723014 88.362 0.32032 87.858 87.725 88.046 -0.50423 25 14 3 0 0 0 0.087258 1 48330 48330 36.044 14.298 1 1056000 16191 10102 11094 11301 19326 19326 0.024986343491036678 GLDHLKNGY 9 Unmodified _GLDHLKNGY_ 0 0 0 nc|ENSG00000145241|Q03188-2|CENPC;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC nc|ENSG00000145241|Q03188-2|CENPC nc|ENSG00000145241|Q03188-2|CENPC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7625427246094 2 508.761623 1015.50869 NaN NaN NaN NaN NaN NaN NaN 36.476 1 36.476 35.976 36.976 0 0 0 0 0.46757 1 19351 19351 16.942 4.4107 1 16192 5678 11095 11302 19327 19327 0.0015599926638287798 GLDIDGIYRV 10 Unmodified _GLDIDGIYRV_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8041381835938 2 560.803488 1119.59242 NaN NaN NaN NaN NaN NaN NaN 65.708 1 65.224 64.724 65.724 -0.48428 0 0 0 0.22565 1 35870 35870 55.503 36.246 1 16193 7325 11096 11303 19328 19328 0.03741110643431966 GLDLLYGSP 9 Unmodified _GLDLLYGSP_ 0 0 0 REV__nc|ENSG00000099139|Q92824-2|PCSK5 REV__nc|ENSG00000099139|Q92824-2|PCSK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7476806640625 2 467.74765 933.480748 0.4674 0.00021862 -1.0182 -0.00047628 -0.55084 -0.00025766 467.74741459939065 65.816 0.25639 65.816 65.624 65.88 0 18 12 2 0 0 0 0.30562 1 36667 36667 16.942 0 1 1860100 + 16194 17967 11097 11304 19329 19329 0.011346762862785909 GLDLLYGSP 9 Unmodified _GLDLLYGSP_ 0 0 0 REV__nc|ENSG00000099139|Q92824-2|PCSK5 REV__nc|ENSG00000099139|Q92824-2|PCSK5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 467.74765 933.480748 0.4674 0.00021862 -1.0182 -0.00047628 -0.55084 -0.00025766 467.74741459939065 65.816 0.25639 65.816 65.624 65.88 0 0 0 NaN 16.942 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1860100 + 16195 17967 11097 11304 0.011346762862785909 GLDRLNVTV 9 Unmodified _GLDRLNVTV_ 0 0 0 nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1 nc|ENSG00000156515|P19367-4|HK1 nc|ENSG00000156515|P19367-4|HK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7855834960938 2 493.785099 985.555644 0.52409 0.00025879 0.34595 0.00017083 0.87005 0.00042962 493.7852515418602 49.803 0.23455 49.803 49.671 49.905 0 22 10 3 0 0 0 0.062454 1 27446 27446 41.956 12.874 1 3706300 16196 6464 11098 11305 19330 19330 0.06228858817519267 GLDRLNVTV 9 Unmodified _GLDRLNVTV_ 0 0 0 nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1 nc|ENSG00000156515|P19367-4|HK1 nc|ENSG00000156515|P19367-4|HK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7862243652344 2 493.785099 985.555644 1.0273 0.00050726 -0.059982 -2.9618E-05 0.96731 0.00047764 493.7850742616348 50.18 0.3039 49.788 49.607 49.911 -0.3923 35 14 3 0 0 0 0.017075 2 26980 26980;27084 66.457 16.524 1 10284000 16197 6464 11098 11305 19331;19332 19331 0.06228858817519267 GLDRLNVTV 9 Unmodified _GLDRLNVTV_ 0 0 0 nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1 nc|ENSG00000156515|P19367-4|HK1 nc|ENSG00000156515|P19367-4|HK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7854309082031 2 493.785099 985.555644 0.74259 0.00036668 0.40313 0.00019906 1.1457 0.00056574 493.78540463090553 56.469 0.5052 50.492 50.25 50.755 -5.9769 65 28 3 0 0 0 0.062454 2 36072 35936;36072 41.956 15.687 1 58619000 16198 6464 11098 11305 19333;19334 19334 0.06228858817519267 GLDRNAPSV 9 Unmodified _GLDRNAPSV_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7119140625 2 464.745973 927.477394 0.049626 2.3064E-05 -1.0291 -0.00047825 -0.97943 -0.00045519 464.7455936254235 25.614 0.20797 25.614 25.466 25.674 0 12 9 2 0 0 0 0.18482 1 13148 13148 18.146 7.3224 1 461460 16199 8565 11099 11306 19335 19335 0.010754262322734576 GLDSAGII 8 Unmodified _GLDSAGII_ 0 0 0 ENST00000498040.5_1_21:45148712-45148838:+|nuORF ENST00000498040.5_1_21:45148712-45148838:+|nuORF ENST00000498040.5_1_21:45148712-45148838:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.2081604003906 2 373.208161 744.401769 0.16758 6.2543E-05 0.36551 0.00013641 0.5331 0.00019896 373.2083431343623 47.196 0.30066 47.196 47.062 47.362 0 20 13 2 0 0 0 0.72953 1 25844 25844 14.582 0 1 2112900 16200 14410 11100 11307 19336 19336 0.019344490519983992 GLDSGFHSV 9 Unmodified _GLDSGFHSV_ 0 0 0 ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENSG00000077454|ENST00000310300|LRCH4 MSMS AL20221201_MKP_PDAC_01 4 459.7199096679688 2 459.719424 917.424296 NaN NaN NaN NaN NaN NaN NaN 42.364 1 37.679 37.179 38.179 -4.6846 0 0 0 0.12337 1 25584 25584 39.957 3.9131 1 16201 1218;13771 11101 11308 19337 19337 -0.037719515503795265 GLDSISLFGL 10 Unmodified _GLDSISLFGL_ 0 0 0 ENST00000324350.9_1_1:36438983-36439094:+|nuORF ENST00000324350.9_1_1:36438983-36439094:+|nuORF ENST00000324350.9_1_1:36438983-36439094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2835083007812 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 75.602 1 75.602 75.102 76.102 0 0 0 0 0.96627 1 42051 42051 4.3292 1.44 1 16202 11799 11102 11309 19338 19338 0.03970920866152028 GLDSYAILTHF 11 Unmodified _GLDSYAILTHF_ 0 0 0 REV__ENSG00000154122|ENST00000284268|ANKH REV__ENSG00000154122|ENST00000284268|ANKH MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8804321289062 3 412.880156 1235.61864 0.72586 0.00029969 -0.93334 -0.00038536 -0.20748 -8.5665E-05 412.8798302462225 28.141 0.59452 24.993 24.826 25.421 -3.1482 59 31 3 0 0 0 0.66568 2 15720 15601;15720 7.4771 3.6007 1 16176000 + 16203 21207 11103 11310 19339;19340 19340 0.01025379814882399 GLDYLAYAI 9 Unmodified _GLDYLAYAI_ 0 0 0 ENSG00000122971|ENST00000242592|ACADS;ENST00000539690.1_1_12:121163604-121175022:+|nuORF ENSG00000122971|ENST00000242592|ACADS ENSG00000122971|ENST00000242592|ACADS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.8036193847656 2 499.7633 997.512048 1.0984 0.00054894 0.96409 0.00048182 2.0625 0.0010308 499.7638434996095 32.166 0.3299 28.31 28.133 28.463 -3.8562 32 19 2 0 0 0 0.16785 1 18371 18371 23.148 5.0134 1 19114000 16204 3674 11104 11311 19341 19341 0.013192493203632694 GLECSFDF 8 Unmodified _GLECSFDF_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.1900634765625 2 459.189111 916.363669 0.45973 0.00021111 0.41673 0.00019136 0.87646 0.00040246 459.189320976095 65.083 0.2839 65.083 64.936 65.219 0 25 12 3 0 0 0 0.78849 1 36278 36278 9.3474 3.587 1 1860900 16205 8059 11105 11312 19342 19342 -0.09785804924979402 GLECSFDF 8 Unmodified _GLECSFDF_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.1895141601562 2 459.189111 916.363669 0.44326 0.00020354 0.69853 0.00032076 1.1418 0.0005243 459.18932255364246 65.303 0.25305 65.303 65.194 65.447 0 17 9 2 0 0 0 0.72953 1 36437 36437 14.582 5.2343 1 1541900 16206 8059 11105 11312 19343 19343 -0.09785804924979402 GLECSFDF 8 Unmodified _GLECSFDF_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.1881713867188 2 459.189111 916.363669 -0.05941 -2.728E-05 0.28634 0.00013148 0.22693 0.0001042 459.18945596789007 65.807 0.31911 65.323 65.041 65.36 -0.48428 22 13 2 0 0 0 0.78849 1 35841 35841 9.3474 3.587 1 1160600 16207 8059 11105 11312 19344 19344 -0.09785804924979402 GLEDESRWVF 10 Unmodified _GLEDESRWVF_ 0 0 0 REV__nc|ENSG00000148219|O75129-6|ASTN2 REV__nc|ENSG00000148219|O75129-6|ASTN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7664794921875 3 413.199777 1236.5775 -0.89554 -0.00037004 0.46548 0.00019234 -0.43006 -0.0001777 413.19995967784644 32.946 0.27707 32.946 32.811 33.088 0 29 13 3 0 0 0 0.23981 1 17215 17215 0.77653 0 1 3935400 + 16208 20935 11106 11313 19345 19345 -0.03132381224600067 GLEEADTSHS 10 Unmodified _GLEEADTSHS_ 0 0 0 nc|ENSG00000181392|Q8N205-2|SYNE4;ENSG00000181392|ENST00000324444|SYNE4 nc|ENSG00000181392|Q8N205-2|SYNE4 nc|ENSG00000181392|Q8N205-2|SYNE4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.299072265625 2 523.225268 1044.43598 0.38912 0.0002036 -2.0118 -0.0010526 -1.6227 -0.00084902 523.2242004413503 57.376 0.2303 56.887 56.773 57.003 -0.48974 16 10 2 0 0 0 0.23227 1 31221 31221 6.7232 1.4925 1 1611200 16209 8968 11107 11314 19346 19346 -0.08445799317723868 GLEGHQCARL 10 Unmodified _GLEGHQCARL_ 0 0 0 REV__ENST00000522140.1_1_5:167858442-167880978:+|nuORF REV__ENST00000522140.1_1_5:167858442-167880978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.271728515625 2 542.271832 1082.52911 0.24318 0.00013187 -0.66475 -0.00036048 -0.42158 -0.00022861 542.2714665964509 90.466 0.42612 89.971 89.713 90.139 -0.49457 58 19 4 0 0 0 0.6606 1 49525 49525 7.2892 2.0586 1 4556600 + 16210 28297 11108 11315 19347 19347 -0.008851533454844684 GLEGWWLCSLH 11 Unmodified _GLEGWWLCSLH_ 0 0 0 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.8098754882812 2 650.81079 1299.60703 NaN NaN NaN NaN NaN NaN NaN 86.843 1 86.843 86.343 87.343 0 0 0 0 0.94184 1 48096 48096 1.1933 0 1 16211 2837 11109 11316 19348 19348 -0.030791404800993405 GLELVTRNIF 10 Unmodified _GLELVTRNIF_ 0 0 0 REV__ENSG00000186523|ENST00000448228|FAM86B1 REV__ENSG00000186523|ENST00000448228|FAM86B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3355712890625 2 581.334956 1160.65536 0.64041 0.0003723 -0.57786 -0.00033593 0.062556 3.6366E-05 581.3346830908364 72.894 0.37437 72.418 72.209 72.583 -0.47588 31 16 2 0 0 0 0.40046 1 39918 39918 25.399 0 1 2075400 + 16212 20749 11110 11317 19349 19349 0.08145676431445281 GLELVTRNIF 10 Unmodified _GLELVTRNIF_ 0 0 0 REV__ENSG00000186523|ENST00000448228|FAM86B1 REV__ENSG00000186523|ENST00000448228|FAM86B1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 581.334956 1160.65536 0.64041 0.0003723 -0.57786 -0.00033593 0.062556 3.6366E-05 581.3346830908364 72.894 0.37437 72.418 72.209 72.583 -0.47588 -0.00018762 -9.7232E-05 NaN 25.399 31 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2075400 + 16213 20749 11110 11317 0.08145676431445281 GLELVTRNIF 10 Unmodified _GLELVTRNIF_ 0 0 0 REV__ENSG00000186523|ENST00000448228|FAM86B1 REV__ENSG00000186523|ENST00000448228|FAM86B1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 581.334956 1160.65536 0.55696 0.00032378 0.14899 8.6614E-05 0.70596 0.0004104 581.3343931016456 72.376 0.17115 72.418 72.316 72.487 0.041733 0.00018762 0.00074785 NaN 25.399 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 657590 + 16214 20749 11110 11317 0.08145676431445281 GLERRVGP 8 Unmodified _GLERRVGP_ 0 0 0 REV__ENST00000539966.5_1_13:99109511-99112662:-|nuORF REV__ENST00000539966.5_1_13:99109511-99112662:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2599487304688 2 442.259051 882.503549 1.3603 0.00060162 0.2169 9.5927E-05 1.5772 0.00069755 442.2592584454138 37.303 0.34965 33.02 32.827 33.177 -4.2835 30 20 2 0 0 0 0.58902 1 21885 21885 26.884 2.8631 1 8216400 + 16215 28574 11111 11318 19350 19350 0.05759740194423557 GLERRVPG 8 Unmodified _GLERRVPG_ 0 0 0 ENST00000437322.2_1_X:49642981-49643347:-|nuORF ENST00000437322.2_1_X:49642981-49643347:-|nuORF ENST00000437322.2_1_X:49642981-49643347:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2597351074219 2 442.259051 882.503549 -0.2921 -0.00012919 1.19 0.0005263 0.89793 0.00039712 442.2597040224976 33.249 0.21168 33.09 32.959 33.171 -0.15918 15 8 2 0 0 0 0.71527 1 17348 17348 15.847 0 1 2220900 16216 13346 11112 11319 19351 19351 0.05759740194423557 GLETVKEW 8 Unmodified _GLETVKEW_ 0 0 0 REV__ENST00000471323.1_1_19:36502301-36502343:-|nuORF REV__ENST00000471323.1_1_19:36502301-36502343:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2530212402344 2 481.2531 960.491647 0.089178 4.2917E-05 2.2792 0.0010969 2.3684 0.0011398 481.2541485857428 33.328 0.16299 33.357 33.274 33.437 0.028934 11 6 2 0 0 0 0.79783 1 17547 17547 7.9102 0.62092 1 963460 + 16217 27343 11113 11320 19352 19352 0.009820786605587273 GLEVFPGDL 9 Unmodified _GLEVFPGDL_ 0 0 0 ENSG00000187510|ENST00000344636|PLEKHG7 ENSG00000187510|ENST00000344636|PLEKHG7 ENSG00000187510|ENST00000344636|PLEKHG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4874267578125 1 946.488024 945.480748 -0.60731 -0.00057481 -0.48935 -0.00046317 -1.0967 -0.001038 946.489722561414 52.14 0.45125 52.14 52.016 52.467 0 30 19 2 0 0 0 0.28047 1 28952 28952 18.135 0 1 1389300 16218 9555 11114 11321 19353 19353 0.0058267628628527746 GLEVLWRKL 9 Unmodified _GLEVLWRKL_ 0 0 0 REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1 REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.2185363769531 3 371.897481 1112.67061 1.1812 0.0004393 0.45417 0.00016891 1.6354 0.00060821 371.8975869054965 43.867 0.30262 39.103 38.901 39.204 -4.7648 23 18 2 0 0 0 0.18428 1 26622 26622 19.362 0 1 6092900 + 16219 29779 11115 11322 19354 19354 0.11878588019317249 GLEVLWRKL 9 Unmodified _GLEVLWRKL_ 0 0 0 REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1 REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 371.897481 1112.67061 0.19297 7.1764E-05 0.75748 0.00028171 0.95045 0.00035347 371.89768183636033 39.051 0.19463 39.062 39.001 39.196 0.011452 -0.020073 0.00023435 NaN 19.362 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1252800 + 16220 29779 11115 11322 0.11878588019317249 GLFADLLPRL 10 Unmodified _GLFADLLPRL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8364868164062 2 557.834591 1113.65463 4.358 0.0024311 -1.6081 -0.00089707 2.7499 0.001534 557.8336951970092 98.741 0.19156 98.713 98.584 98.776 -0.028282 13 6 3 0 0 0 0.17714 1 54863 54863 36.506 10.238 1 2870400 16221 10329 11116 11323 19355 19355 0.1023488178241223 GLFCLLTML 9 Unmodified _GLFCLLTML_ 0 0 0 REV__ENSG00000183706|ENST00000328795|OR4N4 REV__ENSG00000183706|ENST00000328795|OR4N4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.77392578125 2 505.774299 1009.53405 -0.078739 -3.9824E-05 -0.085754 -4.3372E-05 -0.16449 -8.3196E-05 505.77427135386785 59.501 0.33599 59.01 58.835 59.171 -0.49079 41 15 4 0 0 0 0.37804 1 32425 32425 13.508 0 1 5633100 + 16222 23369 11117 11324 19356 19356 0.02966014472929146 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5028076171875 1 936.503674 935.496398 0.33799 0.00031653 -0.58221 -0.00054524 -0.24422 -0.00022871 936.5034138879926 93.999 0.32615 93.579 93.39 93.716 -0.42044 31 15 3 0 0 0 0.052168 2 51396 51300;51396 44.407 8.3628 1 2602700 16223 583 11118 11325 19357;19358 19358 0.026069628033155823 GLFDTAISL 9 Unmodified _GLFDTAISL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5051879882812 1 936.503674 935.496398 1.0953 0.0010258 -0.071328 -6.6799E-05 1.024 0.00095899 936.5029879636048 100.26 0.17456 94.081 93.996 94.171 -6.1757 26 10 3 0 0 0 0.010877 1 66962 66962 77.984 6.8507 1 108470000 16224 583 11118 11325 19359 19359 0.026069628033155823 GLFGHCIVL 9 Carbamidomethyl (C) _GLFGHC(Carbamidomethyl (C))IVL_ GLFGHC(1)IVL GLFGHC(46)IVL 0 1 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2737121582031 2 508.273312 1014.53207 0.93817 0.00047685 -0.36207 -0.00018403 0.5761 0.00029282 508.2735484168256 95.107 0.34398 88.931 88.677 89.021 -6.1757 43 18 3 0 0 0 0.047696 1 62980 62980 45.75 13.633 1 14600000 16225 4912;13641 11119 11326 19360 19360 509 0.02538721779330899 GLFGKELHKV 10 Unmodified _GLFGKELHKV_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5574340820312 3 376.557236 1126.64988 -0.032635 -1.2289E-05 0.40099 0.000151 0.36836 0.00013871 376.55739059886105 32.097 0.27671 31.968 31.818 32.095 -0.12915 27 10 4 0 0 0 0.1899 1 16697 16697 24.957 14.058 1 4054800 16226 4240;5332 11120 11327 19361 19361 0.09161997639625952 GLFGKELHKV 10 Unmodified _GLFGKELHKV_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MSMS AL20221201_MKP_PDAC_01 4 376.5591735839844 3 376.557236 1126.64988 NaN NaN NaN NaN NaN NaN NaN 77.981 1 71.805 71.305 72.305 -6.1757 0 0 0 0.52595 1 51022 51022 17.049 10.011 1 16227 4240;5332 11120 11327 19362 19362 0.09161997639625952 GLFMNSEFL 9 Unmodified _GLFMNSEFL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000462785.1_1_2:112526870-112536431:-|nuORF;ENST00000454465.1_1_2:87398353-87423749:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7557983398438 2 529.254785 1056.49502 0.33769 0.00017872 3.9737 0.0021031 4.3114 0.0022818 529.2571335743639 92.817 0.11296 92.36 92.284 92.397 -0.4574 6 4 2 0 0 0 0.203 1 50723 50723 9.3474 3.587 1 525860 16228 6239 11121 11328 19363 19363 -0.030969945570632262 GLFPVTPEAV 10 Unmodified _GLFPVTPEAV_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2847290039062 2 515.2844 1028.55425 0.75774 0.00039045 -0.082638 -4.2582E-05 0.6751 0.00034787 515.2843884949513 80.997 0.33089 80.504 80.251 80.582 -0.49247 22 14 2 0 0 0 0.50944 1 44275 44275 15.847 8.558 1 1365000 16229 4485 11122 11329 19364 19364 0.04111224728740126 GLFPWTPKL 9 Unmodified _GLFPWTPKL_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8050537109375 2 529.805303 1057.59605 0.083036 4.3993E-05 1.9766 0.0010472 2.0597 0.0010912 529.8052908687146 98.991 0.16207 92.815 92.716 92.878 -6.1757 21 10 3 0 0 0 0.018301 1 65776 65776 65.235 18.314 1 69599000 16230 4457;16195 11123 11330 19365 19365 0.0695582520793323 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7802429199219 2 480.779285 959.544017 0.60842 0.00029252 0.19447 9.3495E-05 0.80289 0.00038601 480.7792062037224 52.536 0.15501 52.103 52.003 52.158 -0.43367 12 7 2 0 0 0 0.43463 1 28410 28410 10.824 1.4765 1 1565600 16231 1485 11124 11331 19366 19366 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7793273925781 2 480.779285 959.544017 0.58775 0.00028258 -0.048317 -2.323E-05 0.53943 0.00025935 480.77922310493784 52.203 0.28453 52.145 51.983 52.267 -0.058918 29 13 3 0 0 0 0.0090524 1 28286 28286 85.642 53.525 1 4696200 16232 1485 11124 11331 19367 19367 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7796936035156 2 480.779285 959.544017 0.64755 0.00031133 0.92154 0.00044306 1.5691 0.00075438 480.7796262644989 58.232 0.39442 52.204 51.989 52.383 -6.0275 30 20 2 0 0 0 0.018301 1 37261 37261 65.235 33.118 1 24606000 16233 1485 11124 11331 19368 19368 0.06262661794187352 GLFQGKTPL 9 Unmodified _GLFQGKTPL_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.779285 959.544017 0.60842 0.00029252 0.19447 9.3495E-05 0.80289 0.00038601 480.7792062037224 52.536 0.15501 52.103 52.003 52.158 -0.43367 -0.047812 -0.00019543 NaN 85.642 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1565600 16234 1485 11124 11331 0.06262661794187352 GLFRRETF 8 Unmodified _GLFRRETF_ 0 0 0 REV__ENST00000451400.1_1_2:105050930-105122404:+|nuORF REV__ENST00000451400.1_1_2:105050930-105122404:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2774658203125 2 513.279983 1024.54541 NaN NaN NaN NaN NaN NaN NaN 62.449 1 62.449 61.949 62.949 0 0 0 0 0.9249 1 34831 34831 15.768 4.6538 1 + 16235 26746 11125 11332 19369 19369 0.03412295882935723 GLFSAKLFL 9 Unmodified _GLFSAKLFL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3009643554688 2 498.299853 994.585153 0.65037 0.00032408 1.0876 0.00054195 1.738 0.00086603 498.3004317282192 99.618 0.14269 93.442 93.365 93.508 -6.1757 19 8 3 0 0 0 0.0090524 1 66393 66393 85.642 39.621 1 58966000 16236 7311 11126 11333 19370 19370 0.08764422833655772 GLFSALSELGL 11 Unmodified _GLFSALSELGL_ 0 0 0 REV__ENST00000342609.6_1_2:191857981-191858245:-|nuORF REV__ENST00000342609.6_1_2:191857981-191858245:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8085327148438 2 553.808239 1105.60193 0.77313 0.00042816 0.067215 3.7224E-05 0.84034 0.00046539 553.808242130267 64.067 0.22626 63.581 63.492 63.718 -0.48512 17 10 2 0 0 0 0.46578 1 34970 34970 18.146 4.2403 1 1445000 + 16237 25722 11127 11334 19371 19371 0.05334878928942999 GLGAAVVAVA 10 Unmodified _GLGAAVVAVA_ 0 0 0 nc|ENSG00000156687|Q6UXZ4-2|UNC5D;ENSG00000156687|ENST00000404895|UNC5D nc|ENSG00000156687|Q6UXZ4-2|UNC5D nc|ENSG00000156687|Q6UXZ4-2|UNC5D MSMS AL20221201_MKP_PDAC_01 4 414.2537231445312 2 414.252903 826.491253 NaN NaN NaN NaN NaN NaN NaN 68.713 1 62.538 62.038 63.038 -6.1757 0 0 0 0.38625 1 44864 44864 32.117 0 1 16238 6475 11128 11335 19372 19372 0.07106703731369635 GLGFIAFCF 9 Unmodified _GLGFIAFCF_ 0 0 0 ENST00000309137.12_1_16:57187730-57187889:-|nuORF ENST00000309137.12_1_16:57187730-57187889:-|nuORF ENST00000309137.12_1_16:57187730-57187889:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7452087402344 2 487.743857 973.47316 NaN NaN NaN NaN NaN NaN NaN 84.381 1 84.381 83.881 84.881 0 0 0 0 0.84369 1 46780 46780 2.3027 1.5091 1 16239 11662 11129 11336 19373 19373 -0.014637545149867037 GLGFKAKL 8 Unmodified _GLGFKAKL_ 0 0 0 REV__ENSG00000178904|ENST00000392250|DPY19L3 REV__ENSG00000178904|ENST00000392250|DPY19L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2646179199219 2 417.265813 832.517074 NaN NaN NaN NaN NaN NaN NaN 103.14 1 103.09 102.59 103.59 -0.047928 0 0 0 0.97444 1 57280 57280 2.5775 0 1 + 16240 23071 11130 11337 19374 19374 0.09411597973644348 GLGGGKFG 8 Unmodified _GLGGGKFG_ 0 0 0 REV__ENSG00000109079|ENST00000226225|TNFAIP1 REV__ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.3822631835938 1 692.372601 691.365324 0.69322 0.00047997 0.65019 0.00045018 1.3434 0.00093014 692.3726966237864 54.368 0.41161 48.503 48.302 48.713 -5.8653 32 25 2 0 0 0 0.80975 1 34386 34386 0.79363 0 1 11283000 + 16241 18642 11131 11338 19375 19375 0.007296169459550583 GLGGGSVRF 9 Unmodified _GLGGGSVRF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2322998046875 2 425.232502 848.450451 0.46695 0.00019856 0.052502 2.2326E-05 0.51945 0.00022089 425.23232249323286 40.843 0.20445 40.54 40.397 40.601 -0.30304 13 9 2 0 0 0 0.30202 1 21634 21634 17.113 1.2657 1 2186800 + 16242 167 11132 11339 19376 19376 0.020163624117685686 GLGGGSVRF 9 Unmodified _GLGGGSVRF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2325744628906 2 425.232502 848.450451 0.69546 0.00029573 0.10743 4.5683E-05 0.80289 0.00034142 425.2324242484132 45.502 0.36531 40.547 40.348 40.713 -4.9549 35 24 2 0 0 0 0.028475 1 27832 27832 56.177 21.99 1 25399000 + 16243 167 11132 11339 19377 19377 0.020163624117685686 GLGHDVQAVI 10 Unmodified _GLGHDVQAVI_ 0 0 0 REV__INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant REV__INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2380065917969 2 504.777274 1007.53999 1.3959 0.00070462 2.767 0.0013967 4.1629 0.0021014 504.7793506772071 58.481 0.085648 52.406 52.371 52.457 -6.0745 7 4 2 0 0 0 0.22667 1 37505 37505 15.847 7.2539 1 5026100 + 16244 24113 11133 11340 19378 19378 0.03652572300461543 GLGHGGISVT 10 Unmodified _GLGHGGISVT_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;REV__ENSG00000196924|ENST00000369850|FLNA REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4854125976562 1 897.478857 896.47158 0.37549 0.000337 -1.3149 -0.0011801 -0.93936 -0.00084306 897.4774733479655 49.327 0.22654 49.327 49.215 49.441 0 17 10 2 0 0 0 0.60623 1 27125 27125 10.824 2.2306 1 4709600 + 16245 19619;23882 11134 11341 19379 19379 0.019203277206202074 GLGHPCGF 8 Unmodified _GLGHPCGF_ 0 0 0 ENST00000320640.10_1_16:47493082-47495095:-|nuORF ENST00000320640.10_1_16:47493082-47495095:-|nuORF ENST00000320640.10_1_16:47493082-47495095:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1817626953125 2 394.181423 786.348294 -0.44152 -0.00017404 0.059249 2.3355E-05 -0.38227 -0.00015069 394.1816421327815 19.69 0.48688 19.718 19.557 20.044 0.028357 67 35 3 0 0 0 0.80975 1 10042 10042 0.79363 0 1 4778700 16246 11765 11135 11342 19380 19380 -0.05342626931496852 GLGHPCGF 8 Unmodified _GLGHPCGF_ 0 0 0 ENST00000320640.10_1_16:47493082-47495095:-|nuORF ENST00000320640.10_1_16:47493082-47495095:-|nuORF ENST00000320640.10_1_16:47493082-47495095:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.1817626953125 2 394.181423 786.348294 -0.027055 -1.0665E-05 1.072 0.00042257 1.045 0.00041191 394.18198644130666 19.428 0.12394 19.436 19.376 19.5 0.0078487 12 7 2 0 0 0 0.80975 1 9915 9915 0.79363 0 1 366110 16247 11765 11135 11342 19381 19381 -0.05342626931496852 GLGKAEEESE 10 Unmodified _GLGKAEEESE_ 0 0 0 ENST00000259818.7_1_6:3224912-3224984:-|nuORF ENST00000259818.7_1_6:3224912-3224984:-|nuORF ENST00000259818.7_1_6:3224912-3224984:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8062133789062 2 524.743293 1047.47203 -0.11425 -5.9953E-05 0.25099 0.00013171 0.13674 7.1752E-05 525.2452286413937 69.382 0.52457 68.903 68.698 69.223 -0.47903 52 22 3 0 0 0 0.21571 1 38077 38077 25.399 4.9457 1 2393300 16248 11218 11136 11343 19382 19382 -0.04980342140856919 GLGLGPLQM 9 Unmodified _GLGLGPLQM_ 0 0 0 REV__ENST00000274000.9_2_4:113153062-113153314:+|nuORF REV__ENST00000274000.9_2_4:113153062-113153314:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2472229003906 2 443.246763 884.478974 1.7163 0.00076073 0.0068265 3.0258E-06 1.7231 0.00076375 443.24690806118167 41.792 0.39747 37.184 37.014 37.412 -4.6079 37 24 2 0 0 0 0.25297 1 25221 25221 19.439 4.8573 1 4991200 + 16249 25161 11137 11344 19383 19383 0.0321134399669063 GLGLKKGS 8 Unmodified _GLGLKKGS_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.2138977050781 2 380.239796 758.465038 1.9407 0.00073795 0.62846 0.00023896 2.5692 0.00097691 380.2398527674907 41.657 0.23363 37.05 36.952 37.186 -4.6079 24 14 2 0 0 0 8.7369 1 25003 25003 19.439 0 1 5234800 + 16250 19045 11138 11345 19384 19384 0.07614434559900474 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2403259277344 2 420.240327 838.466101 -0.76494 -0.00032146 0.70819 0.00029761 -0.056745 -2.3847E-05 420.24054018626225 27.835 0.34655 27.835 27.638 27.985 0 43 16 3 0 0 0 0.14 2 14387 14285;14387 29.082 12.241 1 9750700 16251 8813 11139 11346 19385;19386 19386 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2408142089844 2 420.240327 838.466101 0.53366 0.00022426 0.28691 0.00012057 0.82057 0.00034484 420.2403220796336 27.831 0.33356 27.784 27.594 27.928 -0.046408 35 14 3 0 0 0 0.015445 2 14380 14286;14380 68.081 3.8444 1 10940000 16252 8813 11139 11346 19387;19388 19388 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2404174804688 2 420.240327 838.466101 NaN NaN NaN NaN NaN NaN NaN 27.699 1 27.728 27.228 28.228 0.029177 0 0 0 0.46232 1 14401 14401 17.113 0.026346 1 16253 8813 11139 11346 19389 19389 0.040406489287988734 GLGPPGRSV 9 Unmodified _GLGPPGRSV_ 0 0 0 ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1 ENST00000536336.5_1_11:18633859-18655855:-|nuORF ENST00000536336.5_1_11:18633859-18655855:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2409973144531 2 420.240327 838.466101 0.8806 0.00037006 -0.33736 -0.00014177 0.54324 0.00022829 420.2401696358009 31.621 0.52213 27.926 27.704 28.226 -3.6958 50 28 2 0 0 0 0.0090524 2 17831 17831;17947 85.642 17.561 1 132100000 16254 8813 11139 11346 19390;19391 19390 0.040406489287988734 GLGQRGLGLML 11 Unmodified _GLGQRGLGLML_ 0 0 0 REV__ENSG00000171219|ENST00000342711|CDC42BPG REV__ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2185363769531 3 372.218226 1113.63285 1.1901 0.00044298 -1.2668 -0.00047152 -0.076679 -2.8541E-05 372.2178900820116 43.771 0.54875 39.006 38.724 39.273 -4.7648 96 34 4 0 0 0 0.54936 1 26622 26622 7.4771 7.4771 1 34903000 + 16255 22544 11140 11347 19392 19392 0.08057753762182074 GLGRQMAQTV 10 Unmodified _GLGRQMAQTV_ 0 0 0 REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF REV__ENST00000488261.6_3_10:135271820-135304727:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.8173217773438 2 530.782033 1059.54951 1.0333 0.00054846 2.4704 0.0013113 3.5037 0.0018597 530.7849091961357 50.945 0.1956 45.296 45.17 45.366 -5.649 19 11 2 0 0 0 0.18632 1 32060 32060 19.257 0 1 24229000 + 16256 24308 11141 11348 19393 19393 0.022120173143321153 GLGSQIRR 8 Unmodified _GLGSQIRR_ 0 0 0 REV__ENSG00000170955|ENST00000303927|CAVIN3 REV__ENSG00000170955|ENST00000303927|CAVIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7650146484375 2 443.764501 885.514448 0.50111 0.00022237 0.95782 0.00042505 1.4589 0.00064742 443.76472602287424 79.745 0.55809 79.8 79.419 79.977 0.05497 30 21 2 0 0 0 0.80676 1 44048 44048 2.5775 0.27475 1 1765300 + 16257 22525 11142 11349 19394 19394 0.0671114256869032 GLGVAGLAAV 10 Unmodified _GLGVAGLAAV_ 0 0 0 REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF REV__ENST00000005340.9_1_17:7137535-7137610:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 827.4991455078125 1 827.498529 826.491253 1.0345 0.00085602 -0.26405 -0.0002185 0.77042 0.00063752 827.4983047248815 68.757 0.41734 62.581 62.365 62.782 -6.1757 37 22 2 0 0 0 0.086532 1 44918 44918 49.669 0 1 24352000 + 16258 24699 11143 11350 19395 19395 0.07106703731369635 GLGYNVTIWGF 11 Unmodified _GLGYNVTIWGF_ 0 0 0 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5452880859375 3 409.544996 1225.61316 0.82657 0.00033852 -0.21699 -8.8868E-05 0.60958 0.00024965 409.5449339758783 43.565 0.22726 38.8 38.74 38.967 -4.7648 17 13 2 0 0 0 0.63851 1 26500 26500 4.7159 0.83959 1 5471900 + 16259 23737 11144 11351 19396 19396 0.009377010230764427 GLHAYPDELI 10 Unmodified _GLHAYPDELI_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2896118164062 2 564.290214 1126.56587 0.63002 0.00035551 0.25878 0.00014603 0.8888 0.00050154 564.2902553144614 71.06 0.35663 70.582 70.434 70.791 -0.47736 27 15 3 0 0 0 0.50944 1 38880 38880 15.847 1.2655 1 1699600 16260 670 11145 11352 19397 19397 0.007654217520894235 GLHFVVPSV 9 Unmodified _GLHFVVPSV_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7742309570312 2 477.774003 953.533452 0.56609 0.00027046 1.3984 0.00066813 1.9645 0.00093859 477.7744523508338 69.054 0.27708 69.085 68.93 69.207 0.030914 31 13 3 0 0 0 0.10925 1 37938 37938 32.117 22.77 1 3204100 16261 873 11146 11353 19398 19398 0.05482679139765878 GLHGWAFTL 9 Unmodified _GLHGWAFTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2642517089844 2 501.263802 1000.51305 1.4107 0.00070714 -0.1754 -8.7921E-05 1.2353 0.00061922 501.2640751325273 97.162 0.27592 90.986 90.861 91.137 -6.1757 34 15 3 0 0 0 0.023761 1 64389 64389 59.795 21.644 1 28003000 16262 7651 11147 11354 19399 19399 0.012815084799399301 GLHGYTEQMVD 11 Unmodified _GLHGYTEQMVD_ 0 0 0 REV__ENST00000563665.3_1_16:30582701-30582962:-|nuORF REV__ENST00000563665.3_1_16:30582701-30582962:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.1893615722656 3 417.188772 1248.54449 0.21253 8.8664E-05 1.2542 0.00052322 1.4667 0.00061188 417.1892796703044 39.643 0.26754 39.651 39.506 39.773 0.00811 38 12 4 0 0 0 0.63851 1 21082 21082 4.7159 0.59929 1 10721000 + 16263 24404 11148 11355 19400 19400 -0.0698433133893559 GLHGYTEQMVD 11 Unmodified _GLHGYTEQMVD_ 0 0 0 REV__ENST00000563665.3_1_16:30582701-30582962:-|nuORF REV__ENST00000563665.3_1_16:30582701-30582962:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.1895446777344 3 417.188772 1248.54449 0.87127 0.00036348 0.7999 0.00033371 1.6712 0.00069719 417.1890187768439 44.38 0.75969 39.528 39.215 39.975 -4.852 227 58 5 0 0 0 0.63851 2 27173 27173;27329 7.4771 4.8458 1 520950000 + 16264 24404 11148 11355 19401;19402 19401 -0.0698433133893559 GLHHRLVY 8 Unmodified _GLHHRLVY_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.782958984375 2 497.782693 993.550834 0.47491 0.0002364 -0.11934 -5.9405E-05 0.35557 0.00017699 497.78232858657884 83.042 0.41328 82.545 82.284 82.698 -0.49751 36 16 3 0 0 0 0.72953 1 45511 45511 14.582 14.582 1 2917100 16265 2685 11149 11356 19403 19403 0.05380019465417263 GLHKMWEV 8 Unmodified _GLHKMWEV_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7408447265625 2 500.257662 998.500772 NaN NaN NaN NaN NaN NaN NaN 27.076 1 27.076 26.576 27.576 0 0 0 0 0.95973 1 13940 13940 8.5933 0.68312 1 16266 3108 11150 11357 19404 19404 0.001461487452502297 GLHKNPSTVP 10 Unmodified _GLHKNPSTVP_ 0 0 0 REV__ENSG00000112149|ENST00000379153|CD83 REV__ENSG00000112149|ENST00000379153|CD83 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2894287109375 2 525.290548 1048.56654 -0.031839 -1.6725E-05 -1.0564 -0.00055492 -1.0882 -0.00057164 525.2898873114505 25.018 0.11004 25.018 24.998 25.108 0 16 9 2 0 0 0 0.52888 1 12831 12831 14.838 0.93222 1 882340 + 16267 18790 11151 11358 19405 19405 0.04420261191808095 GLHPTPMTLVF 11 Unmodified _GLHPTPMTLVF_ 0 0 0 NOS3|p.Q1038H|1|0.17|ENSG00000164867|chr7:151013238-151013238|G/T|missense_variant NOS3|p.Q1038H|1|0.17|ENSG00000164867|chr7:151013238-151013238|G/T|missense_variant NOS3|p.Q1038H|1|0.17|ENSG00000164867|chr7:151013238-151013238|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8874816894531 3 404.886365 1211.63727 -0.10752 -4.3534E-05 4.2212 0.0017091 4.1137 0.0016656 404.88790802238543 19.701 0.084822 19.709 19.672 19.756 0.0078506 6 3 2 0 0 0 0.71036 1 10042 10042 1.3296 0 1 458540 16268 16674 11152 11359 19406 19406 0.039912181850922934 GLHQDFPSV 9 Unmodified _GLHQDFPSV_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000512397.1_1_4:17579088-17584030:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2489624023438 2 500.248349 998.482145 1.2633 0.00063195 1.1834 0.00059198 2.4466 0.0012239 500.2486462340114 50.174 0.64343 44.635 44.408 45.051 -5.5391 61 41 3 0 0 0 0.039985 1 31396 31396 49.933 24.534 1 17562000 16269 261 11153 11360 19407 19407 -0.017156896249503006 GLHTFLLYL 9 Unmodified _GLHTFLLYL_ 0 0 0 CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1 CACNG4-VMP1|1|fusion CACNG4-VMP1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8110961914062 2 538.810585 1075.60662 1.408 0.00075863 -1.5991 -0.00086163 -0.19116 -0.000103 538.8096078734229 92.248 0.28214 92.279 92.135 92.417 0.03019 21 10 3 0 0 0 0.03327 1 51310 51310 53.576 15.424 1 4307800 16270 48 11154 11361 19408 19408 0.07183807862361391 GLIDDIALI 9 Unmodified _GLIDDIALI_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.5523071289062 1 942.550625 941.543348 -0.11044 -0.00010409 1.2872 0.0012133 1.1768 0.0011092 942.55211456821 99.024 0.14156 99.024 98.961 99.102 0 7 4 2 0 0 0 0.052168 1 54686 54686 44.407 2.3125 1 687260 16271 2231 11155 11362 19409 19409 0.07023822354460663 GLIDDIALI 9 Unmodified _GLIDDIALI_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.55029296875 1 942.550625 941.543348 0.73262 0.00069053 -0.58558 -0.00055194 0.14704 0.00013859 942.5493549109334 101.11 0.085381 94.931 94.889 94.974 -6.1757 6 4 2 0 0 0 0.013472 1 67794 67794 70.716 13.244 1 19796000 16272 2231 11155 11362 19410 19410 0.07023822354460663 GLIDEIYGI 9 Unmodified _GLIDEIYGI_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7688903808594 2 496.768583 991.522613 0.24108 0.00011976 0.19006 9.4416E-05 0.43114 0.00021418 496.7686782630254 89.078 0.29717 89.078 88.936 89.234 0 21 14 2 0 0 0 0.53666 1 49292 49292 5.2307 0 1 366550 16273 5183 11156 11363 19411 19411 0.026512319748235313 GLIDENPGL 9 Unmodified _GLIDENPGL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 927.47900390625 1 927.478188 926.470912 0.54191 0.00050261 0.16538 0.00015339 0.70729 0.000656 927.4773790998905 56.986 0.25653 56.986 56.855 57.111 0 18 10 2 0 0 0 0.038285 1 31693 31693 50.855 16.753 1 1530800 16274 10766 11157 11364 19412 19412 0.004734882809088958 GLIDFAIQL 9 Unmodified _GLIDFAIQL_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L;ENST00000462984.1_1_X:70346235-70347318:+|nuORF;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 989.5679931640625 1 989.566609 988.559333 0.89274 0.00088342 -2.6314 -0.002604 -1.7387 -0.0017206 989.5640871515138 101.35 0.10413 95.175 95.107 95.211 -6.1757 11 5 3 0 0 0 0.013323 1 67990 67990 71.134 9.7761 1 18328000 16275 9279;5656 11158 11365 19413 19413 0.0645952859136969 GLIDGRLTI 9 Unmodified _GLIDGRLTI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2899780273438 2 479.290017 956.565481 0.59418 0.00028478 -0.096541 -4.6271E-05 0.49764 0.00023851 479.2899547460684 64.784 0.21397 64.299 64.189 64.403 -0.48512 14 9 2 0 0 0 0.25681 1 35336 35336 19.257 3.4098 1 724380 16276 3366 11159 11366 19414 19414 0.0854604682289164 GLIDGVVEA 9 Unmodified _GLIDGVVEA_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.4720458984375 1 872.472374 871.465098 0.30056 0.00026223 -0.5001 -0.00043632 -0.19955 -0.0001741 872.471722564734 59.364 0.4287 59.364 59.148 59.577 0 48 18 4 0 0 0 0.016184 1 33102 33102 67.344 15.076 1 30472000 16277 2240 11160 11367 19415 19415 0.024223897692309038 GLIDGVVEA 9 Unmodified _GLIDGVVEA_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.4729614257812 1 872.472374 871.465098 0.80997 0.00070668 0.19238 0.00016784 1.0023 0.00087452 872.4724837605737 68.621 0.51872 62.446 62.156 62.675 -6.1757 68 29 3 0 0 0 0.0090851 2 44905 44786;44905 85.357 18.013 1 79313000 16278 2240 11160 11367 19416;19417 19417 0.024223897692309038 GLIDHQTYL 9 Unmodified _GLIDHQTYL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2777709960938 2 530.277106 1058.53966 0.77818 0.00041265 -0.094433 -5.0076E-05 0.68375 0.00036257 530.2770218185614 49.704 0.50756 49.704 49.352 49.859 0 71 22 4 0 0 0 0.011671 2 27318 27318;27428 75.761 9.5726 1 169550000 16279 16412 11161 11368 19418;19419 19418 0.012731525806202626 GLIDHQTYL 9 Unmodified _GLIDHQTYL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2772827148438 2 530.277106 1058.53966 0.6072 0.00032198 -0.27151 -0.00014398 0.33569 0.00017801 530.2769546757087 56.888 0.5677 50.911 50.632 51.2 -5.9769 108 33 4 0 0 0 0.0090524 3 36473 36204;36334;36473 85.642 27.92 1 708890000 16280 16412 11161 11368 19420;19421;19422 19422 0.012731525806202626 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7880859375 2 500.787307 999.560061 0.54912 0.00027499 -0.6099 -0.00030543 -0.060774 -3.0435E-05 500.7870248652766 52.87 0.40236 52.87 52.678 53.08 0 56 18 4 0 0 0 0.0082548 2 29214 29214;29324 96.367 20.606 1 106810000 16281 1883 11162 11369 19423;19424 19423 0.060263232404167866 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7877502441406 2 500.787307 999.560061 0.15894 7.9595E-05 1.0527 0.00052719 1.2117 0.00060678 500.78783114310227 53.364 0.28311 52.912 52.742 53.026 -0.45173 23 13 2 0 0 0 0.0082548 1 28831 28831 96.367 10.725 1 7306300 16282 1883 11162 11369 19425 19425 0.060263232404167866 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7876281738281 2 500.787307 999.560061 1.0943 0.00054802 0.30921 0.00015485 1.4035 0.00070287 500.7871916223839 60.25 0.73758 54.135 53.87 54.607 -6.1147 63 38 2 0 0 0 0.0038489 3 38927 38672;38798;38927 122.18 23.355 1 117740000 16283 1883 11162 11369 19426;19427;19428 19428 0.060263232404167866 GLIDKVNEL 9 Unmodified _GLIDKVNEL_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.787307 999.560061 0.81029 0.00040578 -0.50968 -0.00025524 0.30062 0.00015055 500.787701368954 53.912 0.09211 53.912 53.876 53.968 0 -0.11164 -0.00078166 NaN 122.18 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 635650 16284 1883 11162 11369 0.060263232404167866 GLIEILKKV 9 Unmodified _GLIEILKKV_ 0 0 0 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8419494628906 2 506.841885 1011.66922 0.70744 0.00035856 -0.027161 -1.3766E-05 0.68028 0.0003448 506.8418007196963 67.116 0.37888 67.134 66.939 67.318 0.018028 54 18 4 0 0 0 0.009483 2 36790 36790;36893 81.89 23.211 1 28934000 16285 2283 11163 11370 19429;19430 19429 0.16384953930571555 GLIEILKKV 9 Unmodified _GLIEILKKV_ 0 0 0 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8424072265625 2 506.841885 1011.66922 1.2555 0.00063633 -0.29033 -0.00014715 0.96515 0.00048918 506.8417621724008 95.557 0.26085 89.382 89.247 89.508 -6.1757 48 15 4 0 0 0 0.017075 1 63258 63258 66.457 20.757 1 146300000 16286 2283 11163 11370 19431 19431 0.16384953930571555 GLIEILKKV 9 Unmodified _GLIEILKKV_ 0 0 0 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 ENSG00000105185|ENST00000590247|PDCD5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.841885 1011.66922 0.18699 9.4773E-05 -0.20856 -0.00010571 -0.021569 -1.0932E-05 506.8415690221914 67.61 0.17904 67.128 67.053 67.232 -0.48218 -0.0029925 -0.00015535 NaN 81.89 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 444500 16287 2283 11163 11370 0.16384953930571555 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.80322265625 2 514.802957 1027.59136 0.88548 0.00045585 0.042483 2.1871E-05 0.92797 0.00047772 514.8028980362096 54.319 0.35201 54.319 54.132 54.484 0 48 15 4 0 0 0 0.0087807 2 30111 30111;30223 106.94 17.986 1 35572000 16288 4267 11164 11371 19432;19433 19432 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.303466796875 2 514.802957 1027.59136 0.02558 1.3169E-05 -0.59567 -0.00030665 -0.57009 -0.00029349 514.8025856282703 54.75 0.21883 54.284 54.201 54.42 -0.46664 17 10 2 0 0 0 0.017075 1 29692 29692 66.457 11.683 1 3840300 16289 4267 11164 11371 19434 19434 0.0786689627452688 GLIEKNIEL 9 Unmodified _GLIEKNIEL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8040771484375 2 514.802957 1027.59136 1.045 0.00053796 0.13687 7.046E-05 1.1818 0.00060842 514.8029642277947 60.977 0.43043 54.829 54.667 55.097 -6.1478 54 22 3 0 0 0 0.0047067 1 39219 39219 118.07 18.269 1 90753000 16290 4267 11164 11371 19435 19435 0.0786689627452688 GLIGVGLINV 10 Unmodified _GLIGVGLINV_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8032836914062 2 477.80276 953.590967 1.7976 0.00085888 -0.41547 -0.00019851 1.3821 0.00066037 477.8026746549463 93.147 0.32362 93.17 93.003 93.327 0.022987 23 11 3 0 0 0 0.069105 1 51795 51795 53.576 17.531 1 2776400 16291 5180 11165 11372 19436 19436 0.11231521345325746 GLIGVGLINV 10 Unmodified _GLIGVGLINV_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.8033447265625 2 477.80276 953.590967 1.4236 0.0006802 -0.17842 -8.5252E-05 1.2452 0.00059494 477.802594448569 100.08 0.11868 93.902 93.838 93.957 -6.1757 14 7 2 0 0 0 0.069105 1 66852 66852 53.576 9.1686 1 20919000 16292 5180 11165 11372 19437 19437 0.11231521345325746 GLILIFEWWYF 11 Unmodified _GLILIFEWWYF_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.5969543457031 3 496.26383 1485.76966 0.44996 0.0002233 1.7923 0.00088947 2.2423 0.0011128 496.2647455884295 59.394 0.18645 59.341 59.233 59.42 -0.053062 22 9 3 0 0 0 0.71728 1 32354 32354 2.6312 0.19645 1 8824200 16293 289 11166 11373 19438 19438 0.046205661935573517 GLIPIHADPRL 11 Unmodified _GLIPIHADPRL_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2399291992188 3 401.239907 1200.69789 -0.15358 -6.1624E-05 0.58895 0.00023631 0.43536 0.00017469 401.5744660382623 56.751 0.26639 56.265 56.186 56.453 -0.48554 20 12 2 0 0 0 0.71938 1 30883 30883 2.4348 0 1 1306500 16294 8100 11167 11374 19439 19439 0.10557071559696851 GLIPPVEDF 9 Unmodified _GLIPPVEDF_ 0 0 0 ENSG00000130881|ENST00000253193|LRP3;ENST00000590278.1_1_19:33696051-33698478:+|nuORF;ENST00000518375.1_1_8:105502903-105507508:-|nuORF;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12 ENSG00000130881|ENST00000253193|LRP3;nc|ENSG00000147650|Q9Y561-2|LRP12 ENSG00000130881|ENST00000253193|LRP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7635192871094 2 493.7633 985.512048 NaN NaN NaN NaN NaN NaN NaN 79.403 1 79.403 78.903 79.903 0 0 0 0 0.82396 1 44107 44107 4.756 0 1 16295 4274;5872 11168 11375 19440 19440 0.0187124932037932 GLIQQKVGL 9 Unmodified _GLIQQKVGL_ 0 0 0 REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.3015747070312 2 478.300384 954.586216 0.62522 0.00029904 0.70667 0.000338 1.3319 0.00063704 478.30060386959246 71.554 0.24431 71.078 70.926 71.171 -0.47652 19 9 3 0 0 0 0.2001 1 39161 39161 23.148 5.0134 1 848950 + 16296 28741 11169 11376 19441 19441 0.10710637202578255 GLIQQKVGL 9 Unmodified _GLIQQKVGL_ 0 0 0 REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.3011474609375 2 478.300384 954.586216 1.2297 0.00058816 -0.60988 -0.0002917 0.6198 0.00029645 478.30001283105423 70.971 0.3829 71.007 70.936 71.319 0.035507 26 16 2 0 0 0 0.2001 1 39080 39080 23.148 2.2772 1 2077100 + 16297 28741 11169 11376 19442 19442 0.10710637202578255 GLIQQKVGL 9 Unmodified _GLIQQKVGL_ 0 0 0 REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.300384 954.586216 0.62522 0.00029904 0.70667 0.000338 1.3319 0.00063704 478.30060386959246 71.554 0.24431 71.078 70.926 71.171 -0.47652 0.035423 0.00046464 NaN 23.148 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 848950 + 16298 28741 11169 11376 0.10710637202578255 GLIQQKVGL 9 Unmodified _GLIQQKVGL_ 0 0 0 REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF REV__ENST00000553854.1_1_14:82128143-82128728:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 478.300384 954.586216 1.2297 0.00058816 -0.60988 -0.0002917 0.6198 0.00029645 478.30001283105423 70.971 0.3829 71.007 70.936 71.319 0.035507 -0.035423 -0.00079477 NaN 23.148 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2077100 + 16299 28741 11169 11376 0.10710637202578255 GLKCMPSHHHR 11 Unmodified _GLKCMPSHHHR_ 0 0 0 ENST00000489940.5_3_X:48367869-48368219:+|nuORF;ENST00000486272.1_1_X:48367869-48368285:+|nuORF ENST00000489940.5_3_X:48367869-48368219:+|nuORF ENST00000489940.5_3_X:48367869-48368219:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8834838867188 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 50.463 1 50.414 49.914 50.914 -0.048824 0 0 0 0.93969 1 27289 27289 1.1098 0 1 16300 14181 11170 11377 19443 19443 -0.015383377949774513 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2737731933594 2 449.273835 896.533118 0.023865 1.0722E-05 -0.10403 -4.6736E-05 -0.080161 -3.6014E-05 449.27374136405797 52.076 0.46867 52.076 51.842 52.311 0 38 20 2 0 0 0 0.05447 1 28907 28907 43.858 3.901 1 20554000 16301 7651 11171 11378 19444 19444 0.08071259419898524 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2744140625 2 449.273835 896.533118 0.43033 0.00019334 0.1919 8.6215E-05 0.62223 0.00027955 449.2738767391636 52.48 0.40725 52.046 51.83 52.237 -0.43367 45 20 3 0 0 0 0.017075 2 28315 28315;28429 66.457 7.7256 1 7662500 16302 7651 11171 11378 19445;19446 19445 0.08071259419898524 GLKEGIPAL 9 Unmodified _GLKEGIPAL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2745361328125 2 449.273835 896.533118 0.38982 0.00017513 0.57856 0.00025993 0.96838 0.00043507 449.27415094725535 58.037 0.56199 52.009 51.804 52.366 -6.0275 64 30 3 0 0 0 0.078314 1 37358 37358 38.176 2.0485 1 69132000 16303 7651 11171 11378 19447 19447 0.08071259419898524 GLKGRVFEV 9 Unmodified _GLKGRVFEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7979431152344 2 502.798009 1003.58147 -0.15344 -7.7149E-05 -0.045051 -2.2652E-05 -0.19849 -9.98E-05 503.29894123651866 37.154 0.17072 37.175 37.07 37.24 0.021545 18 7 3 0 0 0 0.14 1 19709 19709 29.082 3.6823 1 2112300 16304 5696 11172 11379 19448 19448 0.07981753059800667 GLKGRVFEV 9 Unmodified _GLKGRVFEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7986450195312 2 502.798009 1003.58147 0.14846 7.4644E-05 -0.41943 -0.00021089 -0.27097 -0.00013624 502.79792011331415 41.35 0.32427 36.742 36.612 36.936 -4.6079 27 21 2 0 0 0 0.032796 1 24809 24809 53.833 17.706 1 13422000 16305 5696 11172 11379 19449 19449 0.07981753059800667 GLKGRVFEV 9 Unmodified _GLKGRVFEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000419176.1_1_10:70434132-70434327:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.798009 1003.58147 -0.50682 -0.00025483 1.3577 0.00068263 0.85085 0.0004278 502.79875841831813 37.499 0.28322 37.228 37.067 37.35 -0.27133 0.02627 0.00064096 NaN 29.082 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1068200 16306 5696 11172 11379 0.07981753059800667 GLKHVLRF 8 Unmodified _GLKHVLRF_ 0 0 0 REV__nc|ENSG00000054267|Q4LE39-4|ARID4B REV__nc|ENSG00000054267|Q4LE39-4|ARID4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.3026123046875 2 485.303262 968.59197 0.30212 0.00014662 -0.39481 -0.0001916 -0.092683 -4.4979E-05 485.30294683024573 76.319 0.19911 75.839 75.71 75.909 -0.47945 10 7 2 0 0 0 0.80624 1 41805 41805 2.8892 0 1 490650 + 16307 17281 11173 11380 19450 19450 0.10641780504886356 GLKKPPTL 8 Unmodified _GLKKPPTL_ 0 0 0 nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA nc|ENSG00000063169|Q9NZM4-2|BICRA nc|ENSG00000063169|Q9NZM4-2|BICRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2791137695312 2 427.278921 852.543289 1.0575 0.00045186 -0.16088 -6.8742E-05 0.89664 0.00038312 427.2788692865486 64.946 0.39426 58.77 58.574 58.968 -6.1757 45 21 3 0 0 0 0.46494 1 42177 42177 38.151 0.17718 1 14671000 16308 856 11174 11381 19451 19451 0.11111867145143606 GLKNGVPAV 9 Unmodified _GLKNGVPAV_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7585144042969 2 427.758352 853.502152 -0.56872 -0.00024327 0.20083 8.5908E-05 -0.36788 -0.00015737 427.75831713624 33.155 0.29747 33.155 32.988 33.285 0 26 14 2 0 0 0 0.016184 1 17338 17338 67.344 31.3 1 5133700 16309 3627 11175 11382 19452 19452 0.06954106105649771 GLKNGVPAV 9 Unmodified _GLKNGVPAV_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.7585144042969 2 427.758352 853.502152 1.3611 0.00058222 -0.47779 -0.00020438 0.88332 0.00037785 427.75792229093895 37.657 0.47417 33.288 33.091 33.565 -4.3689 65 28 3 0 0 0 0.038285 2 22186 22068;22186 50.855 14.811 1 27001000 16310 3627 11175 11382 19453;19454 19454 0.06954106105649771 GLKNGVPAV 9 Unmodified _GLKNGVPAV_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 427.758352 853.502152 -0.26334 -0.00011265 0.65007 0.00027807 0.38673 0.00016543 427.75863839163935 33.203 0.23015 33.043 32.913 33.144 -0.15918 -0.094187 0.0005447 NaN 67.344 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1230200 16311 3627 11175 11382 0.06954106105649771 GLKNGVPAV 9 Unmodified _GLKNGVPAV_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 427.758352 853.502152 0.042516 1.8186E-05 -1.3414 -0.00057381 -1.2989 -0.00055562 427.7567662166596 33.035 0.1199 33.064 32.998 33.118 0.029747 -0.073287 -0.0011591 NaN 67.344 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 456280 16312 3627 11175 11382 0.06954106105649771 GLKRPGWP 8 Unmodified _GLKRPGWP_ 0 0 0 REV__ENST00000559934.5_1_15:78832805-78832943:+|nuORF REV__ENST00000559934.5_1_15:78832805-78832943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7659606933594 2 455.766512 909.518471 0.34771 0.00015847 -1.4013 -0.00063868 -1.0536 -0.0004802 455.76578712538185 89.11 0.40296 88.606 88.371 88.774 -0.50423 40 17 3 0 0 0 0.80143 1 48618 48618 5.7604 1.0044 1 2310000 + 16313 28820 11176 11383 19455 19455 0.06009232062422143 GLKWMPGI 8 Unmodified _GLKWMPGI_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2313537597656 2 451.251849 900.489145 0.80373 0.00036268 2.5137 0.0011343 3.3175 0.001497 451.2530673387602 60.204 0.25394 60.204 60.068 60.322 0 18 10 2 0 0 0 8.7369 1 33614 33614 5.7604 0.52976 1 1097000 16314 627 11177 11384 19456 19456 0.034919517219236695 GLLAAYNSLM 10 Unmodified _GLLAAYNSLM_ 0 0 0 ENSG00000178965|ENST00000326665|ERICH3 ENSG00000178965|ENST00000326665|ERICH3 ENSG00000178965|ENST00000326665|ERICH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8896484375 3 351.519682 1051.53722 0.12814 4.5045E-05 -0.85379 -0.00030012 -0.72565 -0.00025508 351.8536622172791 39.151 0.21663 39.162 39.042 39.259 0.011452 20 9 3 0 0 0 0.23981 1 20898 20898 0.15932 0 1 1002700 16315 8788 11178 11385 19457 19457 0.013509808512708332 GLLAGDRLVEV 11 Unmodified _GLLAGDRLVEV_ 0 0 0 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3322143554688 2 571.332413 1140.65027 0.29549 0.00016882 -1.7713 -0.001012 -1.4758 -0.00084315 571.3315122192588 62.43 0.24664 62.43 62.304 62.551 0 23 17 2 0 0 0 0.25276 1 34820 34820 29.281 5.4913 1 3003300 16316 2624 11179 11386 19458 19458 0.08557372568861865 GLLAGLAYAA 10 Unmodified _GLLAGLAYAA_ 0 0 0 ENSG00000100263|ENST00000216085|RHBDD3 ENSG00000100263|ENST00000216085|RHBDD3 ENSG00000100263|ENST00000216085|RHBDD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2656555175781 2 460.26601 918.517468 0.36819 0.00016946 -1.8082 -0.00083225 -1.44 -0.00066279 460.26510516683976 79.135 0.24717 78.649 78.529 78.776 -0.48596 15 10 2 0 0 0 0.57332 1 43371 43371 12.532 0 1 512770 16317 1781 11180 11387 19459 19459 0.054949729028408 GLLAGYLIY 9 Unmodified _GLLAGYLIY_ 0 0 0 REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.5615234375 1 982.560795 981.553519 1.3463 0.0013228 0.00033511 3.2926E-07 1.3467 0.0013232 982.5606755393818 97.282 0.68037 91.106 90.722 91.403 -6.1757 97 38 3 0 0 0 0.1492 4 64267 64267;64394;64511;64625 28.173 0 1 112610000 + 16318 17501 11181 11388 19460;19461;19462;19463 19460 0.06200430079718444 GLLAGYLIY 9 Unmodified _GLLAGYLIY_ 0 0 0 REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7839965820312 2 491.784036 981.553519 1.3555 0.00066661 0.18075 8.8891E-05 1.5362 0.0007555 491.7840563758484 97.27 0.71923 91.094 90.722 91.441 -6.1757 98 40 3 0 0 0 0.22317 1 64663 64663 20.871 0 1 69599000 + 16319 17501 11181 11388 19464 19464 0.06200430079718444 GLLAKIFEL 9 Unmodified _GLLAKIFEL_ 0 0 0 ENSG00000138180|ENST00000371485|CEP55;nc|ENSG00000138180|Q53EZ4-2|CEP55 ENSG00000138180|ENST00000371485|CEP55 ENSG00000138180|ENST00000371485|CEP55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.313720703125 2 502.312961 1002.61137 1.7715 0.00088985 -0.017005 -8.5418E-06 1.7545 0.00088131 502.31291091897776 93.048 0.39581 93.071 92.874 93.27 0.02298 42 15 4 0 0 0 0.009483 2 51702 51702;51798 81.89 21.377 1 8702300 16320 5030 11182 11389 19465;19466 19465 0.11016692005136974 GLLAQVPSL 9 Unmodified _GLLAQVPSL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2742309570312 2 449.273835 896.533118 0.4237 0.00019036 0.44271 0.0001989 0.8664 0.00038925 449.273994808042 79.12 0.4535 78.634 78.416 78.87 -0.48596 54 19 4 0 0 0 0.013472 2 43386 43283;43386 70.716 3.3717 1 5919500 16321 10329 11183 11390 19467;19468 19468 0.08071259419898524 GLLAQVPSL 9 Unmodified _GLLAQVPSL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2746887207031 2 449.273835 896.533118 0.79721 0.00035817 -0.53734 -0.00024141 0.25987 0.00011675 449.27374945849857 78.6 0.32489 78.653 78.532 78.857 0.052452 25 12 3 0 0 0 0.023164 1 43378 43378 60.39 2.9182 1 7350200 16322 10329 11183 11390 19469 19469 0.08071259419898524 GLLAQVPSL 9 Unmodified _GLLAQVPSL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2738647460938 2 449.273835 896.533118 1.2417 0.00055786 -0.33425 -0.00015017 0.90745 0.0004077 449.2734761582137 87.558 1.0276 81.382 80.947 81.975 -6.1757 87 56 2 0 0 0 0.0094915 5 57681 57554;57681;57804;57927;58073 81.864 3.8797 1 24368000 16323 10329 11183 11390 19470;19471;19472;19473;19474 19471 0.08071259419898524 GLLDKNCHL 9 Carbamidomethyl (C) _GLLDKNC(Carbamidomethyl (C))HL_ GLLDKNC(1)HL GLLDKNC(52)HL 0 1 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1871032714844 3 357.186814 1068.53861 1.567 0.00055971 -0.55236 -0.0001973 1.0146 0.00036242 357.1866524289805 39.326 0.38765 34.875 34.704 35.091 -4.4509 47 23 3 0 0 0 0.036857 1 23269 23269 51.63 38.757 1 20492000 16324 7921 11184 11391 19475 19475 773 0.007086149400493014 GLLDLPFRV 9 Unmodified _GLLDLPFRV_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3084106445312 2 515.30821 1028.60187 0.33698 0.00017365 1.244 0.00064103 1.581 0.00081468 515.30863660053 93.687 0.13462 93.23 93.177 93.311 -0.45741 8 5 2 0 0 0 0.46501 1 51217 51217 9.3831 3.1773 1 185030 16325 1980 11185 11392 19476 19476 0.08870923719587154 GLLDLPFRV 9 Unmodified _GLLDLPFRV_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3090209960938 2 515.30821 1028.60187 1.9521 0.0010059 -0.34991 -0.00018031 1.6022 0.00082563 515.307946925144 93.195 0.53043 93.218 92.917 93.448 0.022987 50 20 4 0 0 0 0.00856 2 51760 51760;51857 100.37 42.9 1 20434000 16326 1980 11185 11392 19477;19478 19477 0.08870923719587154 GLLDLPFRV 9 Unmodified _GLLDLPFRV_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 515.30821 1028.60187 1.0095 0.00052021 -1.5668 -0.00080739 -0.55729 -0.00028718 515.3067403263245 99.449 0.089211 93.273 93.201 93.29 -6.1757 0.033085 -0.0013917 NaN 100.37 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 17950000 16327 1980 11185 11392 0.08870923719587154 GLLDQHGVRL 10 Unmodified _GLLDQHGVRL_ 0 0 0 nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B nc|ENSG00000157870|Q8TBF2-2|PRXL2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8810424804688 3 369.88049 1106.61964 0.8284 0.00030641 -0.34061 -0.00012598 0.48779 0.00018042 369.8805465240641 50.201 0.19929 49.809 49.692 49.891 -0.3923 14 9 2 0 0 0 0.43662 1 27026 27026 19.626 7.4512 1 1989200 16328 16302 11186 11393 19479 19479 0.07059638974487825 GLLDRIMQL 9 Oxidation (M) _GLLDRIM(Oxidation (M))QL_ GLLDRIM(1)QL GLLDRIM(64)QL 0 0 1 nc|ENSG00000116120|Q9NSD9-2|FARSB;ENSG00000116120|ENST00000281828|FARSB nc|ENSG00000116120|Q9NSD9-2|FARSB nc|ENSG00000116120|Q9NSD9-2|FARSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.8030395507812 2 537.802434 1073.59032 0.26544 0.00014275 -0.046002 -2.474E-05 0.21944 0.00011801 537.8023265948905 69.801 0.29204 69.831 69.683 69.975 0.030914 31 14 3 0 0 0 0.01958 1 38385 38385 63.961 15.615 1 3598000 16329 3193 11187 11394 19480 19480 567 0.056463586339759786 GLLDSPTSI 9 Unmodified _GLLDSPTSI_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7463073730469 2 451.745108 901.475663 0.40551 0.00018318 0.32725 0.00014783 0.73276 0.00033102 451.74531875845156 63.083 0.25102 63.083 62.895 63.146 0 19 10 3 0 0 0 0.30562 1 35173 35173 16.942 0 1 785870 16330 9393 11188 11395 19481 19481 0.020983724236884882 GLLEELVTV 9 Unmodified _GLLEELVTV_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;ENST00000533210.5_1_8:144649355-144650416:-|nuORF ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7848205566406 2 486.784233 971.553913 0.2425 0.00011804 1.0754 0.00052347 1.3179 0.00064152 486.7846747281598 94.781 0.37038 94.781 94.591 94.961 0 88 34 3 0 0 0 0.12841 2 52332 52332;52433 30.225 3.8835 1 1993100 16331 10329 11189 11396 19482;19483 19482 0.06699805008906878 GLLEELVTV 9 Unmodified _GLLEELVTV_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;ENST00000533210.5_1_8:144649355-144650416:-|nuORF ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.785888671875 2 486.784233 971.553913 0.52177 0.00025399 0.043959 2.1398E-05 0.56573 0.00027539 486.784128541768 95.254 0.34199 94.886 94.717 95.059 -0.36815 33 15 3 0 0 0 0.18465 2 51993 51993;52096 24.674 4.2203 1 1128900 16332 10329 11189 11396 19484;19485 19484 0.06699805008906878 GLLEELVTV 9 Unmodified _GLLEELVTV_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6;ENST00000533210.5_1_8:144649355-144650416:-|nuORF ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7846069335938 2 486.784233 971.553913 1.5026 0.00073144 0.34561 0.00016824 1.8482 0.00089968 486.78398393318 100.81 0.080818 94.637 94.57 94.651 -6.1757 10 5 2 0 0 0 0.03327 1 67499 67499 53.576 0 1 93626000 16333 10329 11189 11396 19486 19486 0.06699805008906878 GLLEGLVEV 9 Unmodified _GLLEGLVEV_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.5361938476562 1 928.534975 927.527698 0.35264 0.00032744 0.38213 0.00035482 0.73477 0.00068226 928.5352939185356 88.24 0.3251 88.24 88.073 88.398 0 29 16 2 0 0 0 0.042911 1 48801 48801 48.346 2.3249 1 1566100 16334 7181 11190 11397 19487 19487 0.06103535837428353 GLLEGLVEV 9 Unmodified _GLLEGLVEV_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5411987304688 1 928.534975 927.527698 0.39392 0.00036576 1.1409 0.0010594 1.5349 0.0014252 928.5357803087375 88.742 0.25872 88.238 88.112 88.371 -0.50423 19 10 2 0 0 0 0.026094 1 48497 48497 57.471 9.1255 1 939050 16335 7181 11190 11397 19488 19488 0.06103535837428353 GLLEGLVEV 9 Unmodified _GLLEGLVEV_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.53564453125 1 928.534975 927.527698 0.65088 0.00060436 0.75734 0.00070322 1.4082 0.0013076 928.5359157572717 99.588 0.16644 93.412 93.324 93.49 -6.1757 23 10 3 0 0 0 0.0090851 1 66334 66334 85.357 18.013 1 72798000 16336 7181 11190 11397 19489 19489 0.06103535837428353 GLLEINETL 9 Unmodified _GLLEINETL_ 0 0 0 ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36 ENST00000475375.1_1_13:53010343-53024741:-|nuORF ENST00000475375.1_1_13:53010343-53024741:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.27978515625 2 501.279315 1000.54408 0.39396 0.00019748 0.44445 0.00022279 0.8384 0.00042027 501.27979014567387 76.413 0.2704 76.413 76.271 76.541 0 15 10 2 0 0 0 0.37804 1 42490 42490 13.508 1.8676 1 925870 16337 4786 11191 11398 19490 19490 0.04382617003534506 GLLEIVTSV 9 Unmodified _GLLEIVTSV_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2806701660156 2 465.778951 929.543348 0.32563 0.00015167 0.18822 8.7671E-05 0.51385 0.00023934 465.7789157131516 92.558 0.28268 92.077 91.927 92.209 -0.48092 24 13 2 0 0 0 0.39863 1 50555 50555 12.532 3.9383 1 559950 16338 16016;398 11192 11399 19491 19491 0.07575822354488082 GLLEIVTSV 9 Unmodified _GLLEIVTSV_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7792663574219 2 465.778951 929.543348 1.1189 0.00052114 1.5541 0.00072385 2.6729 0.001245 465.77890161081484 100.38 0.26134 94.209 94.03 94.291 -6.1757 25 16 2 0 0 0 0.14602 1 67114 67114 28.487 1.6032 1 34826000 16339 16016;398 11192 11399 19492 19492 0.07575822354488082 GLLEKAVLL 9 Unmodified _GLLEKAVLL_ 0 0 0 TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant;ENSG00000180346|ENST00000603357|TIGD2 TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3128662109375 2 478.312961 954.611368 1.3671 0.0006539 -0.18797 -8.9911E-05 1.1791 0.00056399 478.31285697370527 95.511 0.13506 89.335 89.264 89.399 -6.1757 11 7 2 0 0 0 0.011671 1 63271 63271 75.761 4.6272 1 9946200 16340 8894 11193 11400 19493 19493 0.13224692005132965 GLLELLQPHVF 11 Unmodified _GLLELLQPHVF_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5804748535156 3 422.579929 1264.71796 0.6365 0.00026897 0.64933 0.00027439 1.2858 0.00054337 422.5801420627072 65.286 1.1284 65.286 64.697 65.825 7.6294E-06 69 54 2 0 0 0 0.72981 2 35845 35724;35845 1.4551 0.21989 1 10820000 16341 7256 11194 11401 19494;19495 19495 0.0961882249964674 GLLELLQPHVF 11 Unmodified _GLLELLQPHVF_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.580810546875 3 422.579929 1264.71796 0.5629 0.00023787 1.4615 0.00061759 2.0244 0.00085546 422.58060417458347 69.023 0.76739 69.054 68.546 69.314 0.030914 87 36 3 0 0 0 0.71728 1 37911 37911 2.6312 0.19645 1 4529700 16342 7256 11194 11401 19496 19496 0.0961882249964674 GLLELWTAL 9 Unmodified _GLLELWTAL_ 0 0 0 REV__ENST00000527564.1_1_4:102269974-102270022:+|nuORF REV__ENST00000527564.1_1_4:102269974-102270022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2960205078125 2 508.294768 1014.57498 0.39357 0.00020005 -1.5222 -0.00077372 -1.1286 -0.00057367 508.2939562149864 73.59 0.32011 73.114 72.932 73.252 -0.47588 30 13 3 0 0 0 0.078417 1 40234 40234 38.151 2.107 1 3064700 + 16343 28392 11195 11402 19497 19497 0.06827815108408686 GLLEPFFCPL 10 Unmodified _GLLEPFFCPL_ 0 0 0 REV__MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|16|1|anti-sense REV__MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|16|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2964477539062 2 568.296453 1134.57835 0.62435 0.00035482 2.0713 0.0011771 2.6957 0.0015319 568.800367065338 84.538 1.3627 78.362 77.403 78.766 -6.1757 157 76 3 0 0 0 0.50944 1 55536 55536 15.847 1.0089 1 46088000 + 16344 29466 11196 11403 19498 19498 0.01644741890777368 GLLERVKEL 9 Unmodified _GLLERVKEL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8241577148438 2 528.824224 1055.63389 0.80004 0.00042308 -0.43399 -0.00022951 0.36605 0.00019357 528.8239947710687 49.727 0.16315 49.727 49.671 49.834 0 13 7 2 0 0 0 0.029718 1 27384 27384 55.503 7.7541 1 2405000 16345 3152 11197 11404 19499 19499 0.10830291402771763 GLLERVKEL 9 Unmodified _GLLERVKEL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8846740722656 3 352.885241 1055.63389 0.49899 0.00017609 -0.25531 -9.0097E-05 0.24368 8.5991E-05 352.8851584117275 49.709 0.18505 49.709 49.649 49.834 0 18 8 3 0 0 0 0.1773 1 27412 27412 18.373 0 1 2402200 16346 3152 11197 11404 19500 19500 0.10830291402771763 GLLERVKEL 9 Unmodified _GLLERVKEL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8260498046875 2 528.824224 1055.63389 0.75054 0.0003969 0.42414 0.0002243 1.1747 0.0006212 528.8245069065426 50.079 0.25935 49.686 49.532 49.791 -0.3923 29 12 3 0 0 0 0.0088668 1 26922 26922 87.258 11.497 1 6696500 16347 3152 11197 11404 19501 19501 0.10830291402771763 GLLERVKEL 9 Unmodified _GLLERVKEL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8853149414062 3 352.885241 1055.63389 0.79504 0.00028056 -0.35236 -0.00012434 0.44268 0.00015622 352.8851693940019 50.065 0.24057 49.673 49.55 49.791 -0.3923 21 11 2 0 0 0 0.05447 1 26935 26935 33.445 4.9504 1 4950600 16348 3152 11197 11404 19502 19502 0.10830291402771763 GLLERVKEL 9 Unmodified _GLLERVKEL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7799682617188 2 528.824224 1055.63389 0.99523 0.0005263 0.19658 0.00010396 1.1918 0.00063026 528.8244128670599 49.723 0.11818 49.674 49.645 49.763 -0.048824 9 5 2 0 0 0 0.10271 1 26882 26882 39.95 0 1 1057200 16349 3152 11197 11404 19503 19503 0.10830291402771763 GLLESFYLSF 10 Unmodified _GLLESFYLSF_ 0 0 0 ENST00000503832.1_1_4:107173024-107173063:-|nuORF ENST00000503832.1_1_4:107173024-107173063:-|nuORF ENST00000503832.1_1_4:107173024-107173063:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5377197265625 3 392.537619 1174.59103 1.2594 0.00049435 -1.9881 -0.00078041 -0.72874 -0.00028606 392.5368650561853 21.894 0.33942 19.159 18.995 19.335 -2.7348 45 19 3 0 0 0 0.60623 1 11832 11832 6.1918 1.7857 1 3476600 16350 14479 11198 11405 19504 19504 0.010714765546708804 GLLFGIFPM 9 Unmodified _GLLFGIFPM_ 0 0 0 REV__ENSG00000100652|ENST00000216540|SLC10A1 REV__ENSG00000100652|ENST00000216540|SLC10A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7759399414062 2 497.775157 993.53576 NaN NaN NaN NaN NaN NaN NaN 94.753 1 94.753 94.253 95.253 0 0 0 0 0.70111 1 52376 52376 9.3474 0 1 + 16351 18099 11199 11406 19505 19505 0.03873391553213423 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2477111816406 2 436.247818 870.481082 0.17518 7.6421E-05 -0.29904 -0.00013045 -0.12386 -5.4034E-05 436.24765589354195 64.501 0.46447 64.501 64.255 64.719 0 63 22 4 0 0 0 0.045537 2 35990 35888;35990 46.921 12.818 1 33461000 16352 6727 11200 11407 19506;19507 19507 0.04066096006135922 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 871.4880981445312 1 871.488359 870.481082 0.10568 9.2098E-05 -0.36226 -0.00031571 -0.25658 -0.00022361 871.488141072635 64.485 0.39288 64.485 64.301 64.694 0 54 19 4 0 0 0 0.016184 1 35989 35989 67.344 6.9543 1 22086000 16353 6727 11200 11407 19508 19508 0.04066096006135922 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 871.4898681640625 1 871.488359 870.481082 1.051 0.00091593 0.33258 0.00028984 1.3836 0.0012058 871.4888515315129 71.714 0.50236 65.539 65.243 65.745 -6.1757 44 26 2 0 0 0 0.0082281 1 46834 46834 92.822 24.741 1 48074000 16354 6727 11200 11407 19509 19509 0.04066096006135922 GLLGNVAEV 9 Unmodified _GLLGNVAEV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 436.247818 870.481082 0.3629 0.00015831 0.24602 0.00010733 0.60892 0.00026564 436.2480279763085 64.986 0.36568 64.501 64.274 64.64 -0.48428 -2.6043E-05 0.00032533 NaN 46.921 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2683300 16355 6727 11200 11407 0.04066096006135922 GLLGTLVQL 9 Unmodified _GLLGTLVQL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2903442382812 2 457.289485 912.564418 1.6322 0.0007464 -0.33089 -0.00015131 1.3013 0.00059509 457.28930364478816 100.93 0.16071 94.758 94.67 94.831 -6.1757 32 9 4 0 0 0 0.012158 1 67598 67598 74.396 3.6808 1 758770000 16356 7707 11201 11408 19510 19510 0.10463832454001931 GLLGVTQQL 9 Unmodified _GLLGVTQQL_ 0 0 0 ENSG00000196821|ENST00000374023|ILRUN;nc|ENSG00000196821|Q9H6K1-2|ILRUN ENSG00000196821|ENST00000374023|ILRUN ENSG00000196821|ENST00000374023|ILRUN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7767639160156 2 464.776742 927.538931 0.36278 0.00016861 -0.09245 -4.2969E-05 0.27033 0.00012564 464.7764669637816 68.41 0.28905 67.93 67.764 68.053 -0.48071 23 12 3 0 0 0 0.095049 1 37384 37384 34.187 6.0141 1 1382900 16357 9873 11202 11409 19511 19511 0.07226357931563143 GLLHLEPTL 9 Unmodified _GLLHLEPTL_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.79296875 2 496.792392 991.570232 0.42603 0.00021165 -0.059931 -2.9773E-05 0.3661 0.00018188 496.79259072380177 67.267 0.21021 67.267 67.132 67.342 0 11 8 2 0 0 0 0.49272 1 37529 37529 7.9102 3.1541 1 383610 16358 10217 11203 11410 19512 19512 0.07410930965670559 GLLHLEPTL 9 Unmodified _GLLHLEPTL_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7920837402344 2 496.792392 991.570232 0.56824 0.0002823 0.09205 4.573E-05 0.66029 0.00032802 496.7923213861189 67.645 0.24384 67.163 67.031 67.275 -0.48218 18 10 2 0 0 0 0.052168 1 36967 36967 44.407 10.305 1 1295400 16359 10217 11203 11410 19513 19513 0.07410930965670559 GLLKAYSIR 9 Unmodified _GLLKAYSIR_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2908935546875 2 510.813659 1019.61277 3.9338 0.0020095 -0.079279 -4.0497E-05 3.8546 0.001969 510.81447881138325 99.469 0.15019 99.432 99.352 99.503 -0.036301 7 5 2 0 0 0 0.18118 1 55248 55248 18.135 6.4947 1 829000 + 16360 199 11204 11411 19514 19514 0.10374326093904074 GLLKSQFLCH 10 Unmodified _GLLKSQFLCH_ 0 0 0 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7637939453125 2 573.310426 1144.6063 1.2351 0.00070809 2.2601 0.0012958 3.4952 0.0020038 573.3112462989668 50.293 0.58738 50.245 50.006 50.594 -0.048824 35 28 2 0 0 0 0.23325 1 27363 27363 10.074 0.6908 1 1406300 16361 562 11205 11412 19515 19515 0.03978064870852904 GLLKSQFLCH 10 Unmodified _GLLKSQFLCH_ 0 0 0 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.310426 1144.6063 0.80771 0.00046307 3.9401 0.0022589 4.7478 0.002722 573.3127448345191 50.766 0.80461 50.353 50.051 50.856 -0.41351 0.054197 0.00011562 NaN 10.074 75 39 3 NaN NaN NaN NaN 0 NaN NaN 0 13440000 16362 562 11205 11412 0.03978064870852904 GLLLESIMVY 10 Unmodified _GLLLESIMVY_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8798522949219 3 379.878987 1136.61513 1.2878 0.0004892 1.0547 0.00040068 2.3425 0.00088987 379.87939978856565 35.166 0.63338 31.071 30.7 31.333 -4.0951 107 37 4 0 0 0 0.63089 1 20443 20443 9.544 0 1 100740000 16363 8321 11206 11413 19516 19516 0.05228993716718833 GLLLESIMVY 10 Unmodified _GLLLESIMVY_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8798217773438 3 379.878987 1136.61513 1.4507 0.00055109 0.6189 0.00023511 2.0696 0.0007862 379.87920938623824 83.417 1.0618 77.241 76.715 77.777 -6.1757 126 56 3 0 0 0 0.55245 2 54833 54833;54961 13.615 3.4567 1 24661000 16364 8321 11206 11413 19517;19518 19517 0.05228993716718833 GLLNRPNPLL 10 Unmodified _GLLNRPNPLL_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8394165039062 2 553.837665 1105.66078 0.41852 0.00023179 0.29515 0.00016347 0.71367 0.00039526 553.8379268978455 61.184 0.518 61.14 60.927 61.445 -0.04351 56 25 3 0 0 0 0.087164 1 33318 33318 58.679 32.411 1 7891900 16365 8699 11207 11414 19519 19519 0.11217400013947554 GLLPDVPSL 9 Unmodified _GLLPDVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.5232543945312 1 910.52441 909.517133 0.058946 5.3672E-05 0.71074 0.00064715 0.76969 0.00070082 910.5251128473433 88.578 0.31862 88.578 88.398 88.717 0 31 15 3 0 0 0 0.23158 1 49067 49067 20.454 4.6064 1 921860 16366 3859 11208 11415 19520 19520 0.05875553183000193 GLLPDVPSL 9 Unmodified _GLLPDVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.5269775390625 1 910.52441 909.517133 0.052696 4.7981E-05 0.53103 0.00048351 0.58372 0.00053149 910.5247628988469 89.132 0.4501 88.628 88.347 88.797 -0.50423 56 19 4 0 0 0 0.095405 1 48643 48643 34.102 1.797 1 7634900 16367 3859 11208 11415 19521 19521 0.05875553183000193 GLLPDVPSL 9 Unmodified _GLLPDVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7657470703125 2 455.765843 909.517133 0.34771 0.00015847 0.065877 3.0025E-05 0.41359 0.0001885 455.76578712538185 89.11 0.40296 88.606 88.371 88.774 -0.50423 40 17 3 0 0 0 0.023164 2 48712 48712;48812 60.39 15.983 1 2310000 16368 3859 11208 11415 19522;19523 19522 0.05875553183000193 GLLPDVPSL 9 Unmodified _GLLPDVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7665405273438 2 455.765843 909.517133 0.024424 1.1132E-05 0.64563 0.00029426 0.67005 0.00030539 455.7660756019463 98.922 0.22963 92.746 92.648 92.878 -6.1757 32 15 3 0 0 0 0.0086179 1 65681 65681 89.427 11.442 1 95531000 16369 3859 11208 11415 19524 19524 0.05875553183000193 GLLQDLRPV 9 Unmodified _GLLQDLRPV_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.8031005859375 2 505.803291 1009.59203 0.092588 4.6831E-05 0.71364 0.00036096 0.80623 0.00040779 505.80380545524235 64.743 0.2787 64.257 64.102 64.381 -0.48512 20 12 2 0 0 0 0.070838 1 35324 35324 39.957 1.9833 1 1372000 + 16370 18302 11209 11416 19525 19525 0.08761735714222141 GLLRALPLPW 10 Unmodified _GLLRALPLPW_ 0 0 0 nc|ENSG00000125046|Q9Y2M2-1|SSUH2 nc|ENSG00000125046|Q9Y2M2-1|SSUH2 nc|ENSG00000125046|Q9Y2M2-1|SSUH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2384033203125 3 379.237726 1134.69135 0.097442 3.6954E-05 0.84815 0.00032165 0.94559 0.0003586 379.2380591016329 73.046 0.97389 73.088 72.316 73.29 0.041725 82 46 2 0 0 0 0.71981 1 39869 39869 0.69767 0.69767 1 3743300 16371 16171 11210 11417 19526 19526 0.1293917839898313 GLLRPRAAV 9 Unmodified _GLLRPRAAV_ 0 0 0 REV__ENST00000523828.5_1_17:78389306-78389548:+|nuORF REV__ENST00000523828.5_1_17:78389306-78389548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.807373046875 2 476.806168 951.597784 1.1301 0.00053882 -0.18155 -8.6563E-05 0.94851 0.00045225 476.80613716228 32.312 0.23494 28.456 28.383 28.618 -3.8562 19 13 2 0 0 0 0.078417 1 18407 18407 38.151 4.0487 1 7209800 + 16372 28320 11211 11418 19527 19527 0.12004879016558334 GLLSANLEAL 10 Unmodified _GLLSANLEAL_ 0 0 0 REV__nc|ENSG00000165525|O60524-4|NEMF REV__nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7914123535156 2 500.787307 999.560061 1.3762 0.0006892 4.2754 0.0021411 5.6517 0.0028303 500.7903769541513 54.194 0.45235 48.329 48.048 48.5 -5.8653 39 25 2 0 0 0 0.1899 1 34333 34333 34.932 5.0915 1 11968000 + 16373 22018 11212 11419 19528 19528 0.060263232404167866 GLLSDYPTL 9 Unmodified _GLLSDYPTL_ 0 0 0 REV__ENSG00000182095|ENST00000430969|TNRC18 REV__ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7613525390625 2 489.760758 977.506963 0.22178 0.00010862 -0.86757 -0.0004249 -0.64579 -0.00031628 489.76056952186275 63.325 0.30122 63.325 63.17 63.472 0 22 15 2 0 0 0 0.25297 1 35297 35297 19.439 0 1 3432000 + 16374 23240 11213 11420 19529 19529 0.01730945457757116 GLLSDYPTL 9 Unmodified _GLLSDYPTL_ 0 0 0 REV__ENSG00000182095|ENST00000430969|TNRC18 REV__ENSG00000182095|ENST00000430969|TNRC18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 489.760758 977.506963 0.22178 0.00010862 -0.86757 -0.0004249 -0.64579 -0.00031628 489.76056952186275 63.325 0.30122 63.325 63.17 63.472 0 0 0 NaN 19.439 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3432000 + 16375 23240 11213 11420 0.01730945457757116 GLLTEIRAV 9 Unmodified _GLLTEIRAV_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2983093261719 2 486.297842 970.581131 NaN NaN NaN NaN NaN NaN NaN 62.316 1 61.829 61.329 62.329 -0.48764 0 0 0 0.43483 1 33951 33951 18.146 2.2992 1 16376 7205 11214 11421 19530 19530 0.09466333339946686 GLLTRLLQV 9 Unmodified _GLLTRLLQV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8297119140625 2 506.829309 1011.64407 NaN NaN NaN NaN NaN NaN NaN 82.025 1 82.087 81.587 82.587 0.062004 0 0 0 0.054801 1 45364 45364 55.503 9.8031 1 16377 1899 11215 11422 19531 19531 0.13870899127994107 GLMDNEIKV 9 Unmodified _GLMDNEIKV_ 0 0 0 ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENST00000523752.5_1_8:22880186-22885396:-|nuORF ENST00000523752.5_1_8:22880186-22885396:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7659912109375 2 509.765517 1017.51648 1.304 0.00066472 -2.4116 -0.0012294 -1.1076 -0.00056463 509.7642001050655 58.911 0.30404 52.836 52.649 52.953 -6.0745 25 16 2 0 0 0 0.039985 1 37749 37749 49.933 20.851 1 11248000 16378 3550 11216 11423 19532 19532 0.008423904716437391 GLMDTVKKV 9 Unmodified _GLMDTVKKV_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MSMS AL20221201_MKP_PDAC_01 4 495.7876586914062 2 495.786253 989.557952 NaN NaN NaN NaN NaN NaN NaN 44.583 1 39.731 39.231 40.231 -4.852 0 0 0 0.076083 1 27238 27238 49.554 11.403 1 16379 6858 11217 11424 19533 19533 0.0627557123096949 GLMEDLLKL 9 Oxidation (M) _GLM(Oxidation (M))EDLLKL_ GLM(1)EDLLKL GLM(42)EDLLKL 0 0 1 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2913818359375 2 524.291368 1046.56818 0.36889 0.0001934 0.31013 0.0001626 0.67902 0.000356 524.2914342580316 71.163 0.2439 70.686 70.547 70.791 -0.47735 19 10 2 0 0 0 0.06294 1 38943 38943 41.84 12.758 1 1410300 16380 6247 11218 11425 19534 19534 1111 0.04676134165538315 GLMEDLLKL 9 Oxidation (M) _GLM(Oxidation (M))EDLLKL_ 0 0 1 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.291368 1046.56818 0.81777 0.00042875 1.1693 0.00061307 1.9871 0.0010418 524.2918567339789 70.59 0.21703 70.626 70.503 70.72 0.035507 -0.02996 0.00062582 NaN 41.84 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 762150 16381 6247 11218 11425 1111 0.04676134165538315 GLMLTCMYTG 10 Unmodified _GLMLTCMYTG_ 0 0 0 ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.8774719238281 3 363.830763 1088.47046 0.8243 0.00029991 0.31995 0.00011641 1.1442 0.00041631 363.8310387742932 15.15 0.16467 12.623 12.542 12.706 -2.5273 33 22 2 0 0 0 0.23862 1 7793 7793 1.9064 1.6374 1 2378700 16382 9947 11219 11426 19535 19535 -0.07023714026468042 GLMMAVMI 8 Unmodified _GLMMAVMI_ 0 0 0 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 MSMS AL20221201_MKP_PDAC_01 4 433.223388671875 2 433.220845 864.427138 NaN NaN NaN NaN NaN NaN NaN 91.87 1 85.694 85.194 86.194 -6.1757 0 0 0 0.9706 1 60736 60736 6.3541 0 1 16383 10139 11220 11427 19536 19536 -0.010498590130737284 GLMMRLLSL 9 Unmodified _GLMMRLLSL_ 0 0 0 REV__ENSG00000255974|ENST00000301141|CYP2A6 REV__ENSG00000255974|ENST00000301141|CYP2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3023071289062 2 517.298473 1032.58239 3.9862 0.002062 -1.5287 -0.00079082 2.4574 0.0012712 517.2965761363989 99.328 0.22366 99.299 99.189 99.413 -0.028282 14 7 3 0 0 0 0.14602 1 55212 55212 28.487 3.813 1 4325300 + 16384 24547 11221 11428 19537 19537 0.06740508112852694 GLMQEKIYI 9 Oxidation (M) _GLM(Oxidation (M))QEKIYI_ GLM(1)QEKIYI GLM(56)QEKIYI 0 0 1 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7969360351562 2 555.796817 1109.57908 0.85369 0.00047448 -0.004405 -2.4483E-06 0.84929 0.00047203 555.7967252241583 49.602 0.30194 49.602 49.393 49.695 0 22 12 2 0 0 0 0.028475 1 27323 27323 56.177 27.095 1 3217900 16385 4267 11222 11429 19538 19538 756 0.028675365398157737 GLMTTVHAI 9 Oxidation (M) _GLM(Oxidation (M))TTVHAI_ GLM(1)TTVHAI GLM(67)TTVHAI 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000405405.2_1_6:80663080-80663251:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7548828125 2 479.754953 957.495352 NaN NaN NaN NaN NaN NaN NaN 38.179 1 38.179 37.679 38.679 0 0 0 0 0.029345 1 20375 20375 67.035 30.991 1 16386 2801 11223 11430 19539 19539 486 0.01490425162774045 GLMTTVHAI 9 Oxidation (M) _GLM(Oxidation (M))TTVHAI_ GLM(1)TTVHAI GLM(67)TTVHAI 0 0 1 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000405405.2_1_6:80663080-80663251:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7559204101562 2 479.754953 957.495352 NaN NaN NaN NaN NaN NaN NaN 38.35 1 38.063 37.563 38.563 -0.28687 0 0 0 0.029345 1 20185 20185 67.035 22.628 1 16387 2801 11223 11430 19540 19540 486 0.01490425162774045 GLMTTVHAI 9 Unmodified _GLMTTVHAI_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000405405.2_1_6:80663080-80663251:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7570495605469 2 471.757495 941.500437 NaN NaN NaN NaN NaN NaN NaN 50.029 1 49.636 49.136 50.136 -0.3923 0 0 0 0.13852 1 26927 26927 38.151 11.81 1 16388 2801 11223 11431 19541 19541 0.02734729025382876 GLMTTVHAI 9 Unmodified _GLMTTVHAI_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000405405.2_1_6:80663080-80663251:-|nuORF;ENST00000515281.1_1_11:88141588-88141981:-|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7581787109375 2 471.757495 941.500437 0.51098 0.00024106 0.080979 3.8202E-05 0.59196 0.00027926 471.75774285766295 55.834 0.48674 49.913 49.688 50.174 -5.9211 61 28 3 0 0 0 0.027803 2 35613 35488;35613 56.541 30.2 1 56261000 16389 2801 11223 11431 19542;19543 19543 0.02734729025382876 GLNDLQTQL 9 Unmodified _GLNDLQTQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2677001953125 2 501.266739 1000.51892 0.39566 0.00019833 0.34189 0.00017138 0.73755 0.00036971 501.26688950506997 54.98 0.33948 54.98 54.83 55.17 0 27 14 2 0 0 0 0.010611 2 30501 30501;30616 78.728 24.895 1 12334000 16390 4951 11224 11432 19544;19545 19544 0.01868562200957058 GLNDLQTQL 9 Unmodified _GLNDLQTQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.266739 1000.51892 0.17275 8.6592E-05 0.8506 0.00042638 1.0233 0.00051297 501.2670691960563 55.593 0.20643 55.115 54.986 55.192 -0.47798 0.06751 0.00046929 NaN 78.728 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 875080 16391 4951 11224 11432 0.01868562200957058 GLNEEIARV 9 Unmodified _GLNEEIARV_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.775146484375 2 500.774731 999.534909 0.69129 0.00034618 0.069228 3.4668E-05 0.76052 0.00038085 500.7747445967362 42.379 0.30662 42.379 42.218 42.524 0 27 14 2 0 0 0 0.0071894 1 22902 22902 111.29 43.206 1 27414000 16392 1311 11225 11433 19546 19546 0.035122684378507074 GLNEEIARV 9 Unmodified _GLNEEIARV_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7753295898438 2 500.774731 999.534909 0.93407 0.00046776 -0.59873 -0.00029983 0.33534 0.00016793 500.77419460300797 47.995 0.42434 42.761 42.534 42.958 -5.2339 62 25 3 0 0 0 0.0089732 2 29790 29790;29931 86.332 30.155 1 40809000 16393 1311 11225 11433 19547;19548 19547 0.035122684378507074 GLNFNLHWRF 10 Unmodified _GLNFNLHWRF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.8827209472656 3 435.228001 1302.66217 0.66101 0.00028769 2.0476 0.00089115 2.7086 0.0011788 435.22875279354764 17.854 0.09897 15.267 15.208 15.307 -2.5866 12 9 2 0 0 0 0.23986 1 9386 9386 0 0 1 1242600 16394 782 11226 11434 19549 19549 0.02295034102689897 GLNGVRSAR 9 Unmodified _GLNGVRSAR_ 0 0 0 ENST00000323813.3_1_18:649910-658057:-|nuORF ENST00000323813.3_1_18:649910-658057:-|nuORF ENST00000323813.3_1_18:649910-658057:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7539367675781 2 465.267407 928.520262 0.48854 0.0002273 4.0784 0.0018976 4.567 0.0021249 465.2687805760702 28.772 0.1619 28.71 28.58 28.742 -0.062159 9 6 2 0 0 0 0.18521 1 14798 14798 16.942 2.104 1 2279100 16395 11794 11227 11435 19550 19550 0.053142410803729945 GLNREPLQL 9 Unmodified _GLNREPLQL_ 0 0 0 REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.2645874023438 2 520.298373 1038.58219 1.1061 0.00057548 -1.2082 -0.00062864 -0.10216 -5.3155E-05 520.2977756483807 54.944 0.25565 49.079 48.943 49.199 -5.8653 26 15 2 0 0 0 0.18882 1 34943 34943 10.824 0 1 18332000 + 16396 25441 11228 11436 19551 19551 0.06444547708861137 GLNREPLQL 9 Unmodified _GLNREPLQL_ 0 0 0 REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.298373 1038.58219 0.7059 0.00036728 0.097689 5.0828E-05 0.80359 0.0004181 520.2986118198792 49.367 0.2102 49.367 49.277 49.487 0 0.13861 0.00037926 NaN 25.399 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 7603800 + 16397 25441 11228 11436 0.06444547708861137 GLNREPLQL 9 Unmodified _GLNREPLQL_ 0 0 0 REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF REV__ENST00000313486.11_1_17:1422693-1422885:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.298373 1038.58219 0.70369 0.00036613 -3.9749 -0.0020682 -3.2712 -0.001702 520.2957075005028 49.633 0.17558 49.24 49.198 49.374 -0.3923 0.011561 -0.0038587 NaN 25.399 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6784500 + 16398 25441 11228 11436 0.06444547708861137 GLNVGHLK 8 Unmodified _GLNVGHLK_ 0 0 0 ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2 ENSG00000167207|ENST00000647318|NOD2 ENSG00000167207|ENST00000647318|NOD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.8859558105469 2 419.250695 836.486836 1.2034 0.00050453 1.0604 0.00044457 2.2638 0.0009491 419.25082611282915 32.482 0.23048 28.626 28.565 28.796 -3.8562 16 11 2 0 0 0 8.7369 1 18603 18603 9.3474 0.75416 1 4524300 16399 7586 11229 11437 19552 19552 0.0620523930847412 GLPALMWWRM 10 Unmodified _GLPALMWWRM_ 0 0 0 ENST00000281243.9_1_4:17510922-17513691:-|nuORF ENST00000281243.9_1_4:17510922-17513691:-|nuORF ENST00000281243.9_1_4:17510922-17513691:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8226318359375 2 630.822647 1259.63074 NaN NaN NaN NaN NaN NaN NaN 7.9361 1 7.9514 7.4514 8.4514 0.015238 0 0 0 1.0061 1 3955 3955 0 0 1 16400 11414 11230 11438 19553 19553 0.01131001752719385 GLPDLVADPY 10 Unmodified _GLPDLVADPY_ 0 0 0 ENSG00000113083|ENST00000231004|LOX ENSG00000113083|ENST00000231004|LOX ENSG00000113083|ENST00000231004|LOX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.73828125 2 530.27149 1058.52843 0.72208 0.0003829 0.83774 0.00044423 1.5598 0.00082713 530.2719083021733 57.194 0.2178 57.194 57.022 57.239 0 23 9 3 0 0 0 0.22149 1 31741 31741 14.838 2.3067 1 6189200 16401 2941 11231 11439 19554 19554 0.0015033048646273528 GLPGDYCSSS 10 Unmodified _GLPGDYCSSS_ 0 0 0 REV__ENST00000557594.5_1_14:79746485-79746629:+|nuORF REV__ENST00000557594.5_1_14:79746485-79746629:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2010192871094 2 493.200207 984.385861 0.89889 0.00044333 1.6987 0.00083778 2.5975 0.0012811 493.2011043836851 50.747 0.30569 50.333 50.132 50.438 -0.41351 33 14 4 0 0 0 0.6606 1 27347 27347 7.2892 0.93513 1 2887200 + 16402 28791 11232 11440 19555 19555 -0.10695625247205953 GLPGSIEEL 9 Unmodified _GLPGSIEEL_ 0 0 0 nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2 nc|ENSG00000106823|O94769-2|ECM2 nc|ENSG00000106823|O94769-2|ECM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.74658203125 2 457.745108 913.475663 0.45071 0.00020631 1.8622 0.00085243 2.3129 0.0010587 457.74639505330356 72.125 0.34077 72.125 71.966 72.306 0 27 15 2 0 0 0 0.54444 1 40239 40239 4.756 1.8668 1 1890000 16403 2464 11233 11441 19556 19556 0.015463724236610688 GLPGSIEEL 9 Unmodified _GLPGSIEEL_ 0 0 0 nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2 nc|ENSG00000106823|O94769-2|ECM2 nc|ENSG00000106823|O94769-2|ECM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.745108 913.475663 0.49505 0.00022661 2.6855 0.0012293 3.1806 0.0014559 457.7463011024708 72.452 0.33188 71.976 71.813 72.145 -0.47609 -0.018975 -7.5466E-05 NaN 4.756 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1904400 16404 2464 11233 11441 0.015463724236610688 GLPGSIEEL 9 Unmodified _GLPGSIEEL_ 0 0 0 nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2 nc|ENSG00000106823|O94769-2|ECM2 nc|ENSG00000106823|O94769-2|ECM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 457.745108 913.475663 0.75088 0.00034371 3.0734 0.0014068 3.8243 0.0017505 457.74629401155363 71.845 0.34611 71.884 71.727 72.073 0.039024 -0.11131 0.00027961 NaN 4.756 57 16 4 NaN NaN NaN NaN 0 NaN NaN 0 15384000 16405 2464 11233 11441 0.015463724236610688 GLPISRLYAQY 11 Unmodified _GLPISRLYAQY_ 0 0 0 ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1 ENSG00000152256|ENST00000282077|PDK1 ENSG00000152256|ENST00000282077|PDK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.85595703125 2 640.853512 1279.69247 NaN NaN NaN NaN NaN NaN NaN 83.876 1 83.939 83.439 84.439 0.063171 0 0 0 0.75116 1 46406 46406 14.405 0 1 16406 6176 11234 11442 19557 19557 0.06381347977230689 GLPKNETAL 9 Unmodified _GLPKNETAL_ 0 0 0 REV__KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant REV__KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.766357421875 2 471.766374 941.518196 0.68996 0.0003255 -0.84861 -0.00040035 -0.15865 -7.4845E-05 471.76575377732325 73.162 0.21681 73.162 73.076 73.293 0 14 9 2 0 0 0 0.53666 1 40740 40740 5.2307 0 1 1134700 + 16407 19260 11235 11443 19558 19558 0.04509767551883215 GLPLPCVKK 9 Unmodified _GLPLPCVKK_ 0 0 0 nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 nc|ENSG00000096063|Q96SB4-4|SRPK1 nc|ENSG00000096063|Q96SB4-4|SRPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7959899902344 2 477.793881 953.573209 NaN NaN NaN NaN NaN NaN NaN 102.84 1 102.79 102.29 103.29 -0.047928 0 0 0 0.85798 1 57113 57113 0.52476 0 1 16408 1667 11236 11444 19559 19559 0.09456482818825407 GLPPVSRQTF 10 Unmodified _GLPPVSRQTF_ 0 0 0 REV__ENST00000378787.7_2_13:46946699-46961463:-|nuORF REV__ENST00000378787.7_2_13:46946699-46961463:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.3093872070312 2 551.306198 1100.59784 NaN NaN NaN NaN NaN NaN NaN 95.374 1 89.198 88.698 89.698 -6.1757 0 0 0 0.69089 1 63170 63170 19.362 3.5148 1 + 16409 26272 11237 11445 19560 19560 0.051568342258860866 GLPRYATV 8 Unmodified _GLPRYATV_ 0 0 0 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7494201660156 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 34.854 1 34.854 34.354 35.354 0 0 0 0 0.9249 1 18394 18394 15.768 0 1 + 16410 22022 11238 11446 19561 19561 0.043778195886034155 GLPSHEWQ 8 Unmodified _GLPSHEWQ_ 0 0 0 REV__TNFRSF10A|p.E344Afs*8|1|0.08|ENSG00000104689|chr8:23197166-23197188|CAGCCTCCTCCTCTGAGACCCTT/-|frameshift_variant REV__TNFRSF10A|p.E344Afs*8|1|0.08|ENSG00000104689|chr8:23197166-23197188|CAGCCTCCTCCTCTGAGACCCTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7263488769531 2 477.227417 952.44028 0.5394 0.00025741 3.1 0.0014794 3.6393 0.0017368 477.23092631133704 75.999 0.46586 75.519 75.274 75.74 -0.47945 44 19 3 0 0 0 0.80143 1 41647 41647 5.7604 1.0044 1 1070000 + 16411 18365 11239 11447 19562 19562 -0.03784245313477186 GLPVGEDVL 9 Unmodified _GLPVGEDVL_ 0 0 0 REV__ENST00000323146.7_1_5:139947887-139947935:+|nuORF REV__ENST00000323146.7_1_5:139947887-139947935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.747802734375 2 449.74765 897.480748 0.98399 0.00044255 -0.31345 -0.00014097 0.67054 0.00030157 449.7472892371382 51.229 0.34605 51.229 51.085 51.431 0 30 15 3 0 0 0 0.25297 1 28368 28368 19.439 5.9311 1 4698700 + 16412 25524 11240 11448 19563 19563 0.027906762862812684 GLQAKAPL 8 Unmodified _GLQAKAPL_ 0 0 0 ENST00000259351.9_1_9:129677065-129724587:+|nuORF ENST00000259351.9_1_9:129677065-129724587:+|nuORF ENST00000259351.9_1_9:129677065-129724587:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2484741210938 2 399.247621 796.480688 -0.0031462 -1.2561E-06 2.3014 0.00091881 2.2982 0.00091755 399.2488763566195 37.772 0.70505 37.501 37.157 37.862 -0.27133 49 32 3 0 0 0 0.76859 1 19933 19933 11.114 4.7604 1 6225300 16413 11214 11241 11449 19564 19564 0.07430721076946156 GLQDGLQITV 10 Unmodified _GLQDGLQITV_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2901000976562 2 522.290214 1042.56587 0.46624 0.00024351 -0.066455 -3.4709E-05 0.39979 0.0002088 522.2901858753012 69.445 0.34968 69.445 69.304 69.654 0 35 15 3 0 0 0 0.016642 1 38680 38680 78.728 42.601 1 2170600 16414 7822 11242 11450 19565 19565 0.04629421752065355 GLQDGLQITV 10 Unmodified _GLQDGLQITV_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.253173828125 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 69.929 1 69.45 68.95 69.95 -0.47903 0 0 0 0.51756 1 38233 38233 25.399 10.561 1 16415 7822 11242 11450 19566 19566 0.04629421752065355 GLQDGLQITV 10 Unmodified _GLQDGLQITV_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2899780273438 2 522.290214 1042.56587 NaN NaN NaN NaN NaN NaN NaN 69.994 1 69.515 69.015 70.015 -0.47903 0 0 0 0.095408 1 38270 38270 51.63 24.001 1 16416 7822 11242 11450 19567 19567 0.04629421752065355 GLQDLLFSL 9 Unmodified _GLQDLLFSL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MSMS AL20221201_MKP_PDAC_01 4 503.2852478027344 2 503.2844 1004.55425 NaN NaN NaN NaN NaN NaN NaN 101.94 1 95.767 95.267 96.267 -6.1757 0 0 0 0.098163 1 68427 68427 43.858 13.222 1 16417 8844 11243 11451 19568 19568 0.0521522472874949 GLQEGTHEL 9 Unmodified _GLQEGTHEL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2427978515625 2 492.243264 982.471974 NaN NaN NaN NaN NaN NaN NaN 27.509 1 27.509 27.009 28.009 0 0 0 0 0.12337 1 14176 14176 39.957 5.77 1 16418 8455 11244 11452 19569 19569 -0.019962973501833403 GLQEHSISV 9 Unmodified _GLQEHSISV_ 0 0 0 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2524719238281 2 485.253631 968.49271 -0.38072 -0.00018475 -1.5692 -0.00076144 -1.9499 -0.00094619 485.2524508326608 34.818 0.28584 34.818 34.614 34.9 0 18 14 2 0 0 0 0.0090524 1 18348 18348 85.642 29.464 1 3310200 16419 917 11245 11453 19570 19570 0.0072029302948521945 GLQEHSISV 9 Unmodified _GLQEHSISV_ 0 0 0 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2512817382812 2 485.253631 968.49271 0.80293 0.00038963 -3.6436 -0.0017681 -2.8407 -0.0013784 485.25195909273396 39.538 0.35422 35.087 34.896 35.25 -4.4509 33 21 2 0 0 0 0.023481 1 23448 23448 60.074 22.1 1 14116000 16420 917 11245 11453 19571 19571 0.0072029302948521945 GLQEHSISV 9 Unmodified _GLQEHSISV_ 0 0 0 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MSMS AL20221201_MKP_PDAC_01 4 485.2532958984375 2 485.253631 968.49271 NaN NaN NaN NaN NaN NaN NaN 39.717 1 35.266 34.766 35.766 -4.4509 0 0 0 0.25233 1 23612 23612 27.629 2.6378 1 16421 917 11245 11453 19572 19572 0.0072029302948521945 GLQELDVYA 9 Unmodified _GLQELDVYA_ 0 0 0 ENST00000262644.8_1_8:57871124-57871475:-|nuORF ENST00000262644.8_1_8:57871124-57871475:-|nuORF ENST00000262644.8_1_8:57871124-57871475:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.25634765625 2 504.25584 1006.49713 0.1649 8.3153E-05 0.66103 0.00033333 0.82594 0.00041648 504.2563086355227 70.884 0.75887 70.884 70.707 71.466 0 103 60 2 0 0 0 0.34999 1 39440 39440 14.838 0 1 10002000 16422 11270 11246 11454 19573 19573 -0.005862425476152566 GLQERLTQV 9 Unmodified _GLQERLTQV_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2950439453125 2 522.29583 1042.57711 0.65138 0.00034021 0.62467 0.00032626 1.2761 0.00066648 522.2956724083023 39.1 0.27338 39.1 38.929 39.202 0 28 12 3 0 0 0 0.0089732 1 20894 20894 86.332 27.653 1 4506500 16423 8079 11247 11455 19574 19574 0.05752243846222882 GLQEYVEAV 9 Unmodified _GLQEYVEAV_ 0 0 0 ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX ENSG00000116918|ENST00000366639|TSNAX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2556762695312 2 504.25584 1006.49713 NaN NaN NaN NaN NaN NaN NaN 60.623 1 60.623 60.123 61.123 0 0 0 0 0.57317 1 33809 33809 13.508 1.8676 1 16424 3267 11248 11456 19575 19575 -0.005862425476152566 GLQHGNYV 8 Unmodified _GLQHGNYV_ 0 0 0 REV__ENSG00000165186|ENST00000379361|PTCHD1 REV__ENSG00000165186|ENST00000379361|PTCHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7530822753906 2 444.222134 886.429715 1.6339 0.00072583 0.61081 0.00027133 2.2447 0.00099717 444.2223638544905 50.026 0.40496 49.977 49.805 50.21 -0.048828 52 19 4 0 0 0 8.7369 1 27157 27157 10.183 0.83596 1 15748000 + 16425 21990 11249 11457 19576 19576 -0.018042279679093554 GLQKEIAEL 9 Unmodified _GLQKEIAEL_ 0 0 0 nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7872619628906 2 500.787307 999.560061 -0.24267 -0.00012152 0.43498 0.00021783 0.19231 9.6308E-05 500.78755153920355 48.539 0.47787 48.539 48.351 48.828 0 39 22 3 0 0 0 0.029718 1 26610 26610 55.503 17.327 1 6378000 16426 1158 11250 11458 19577 19577 0.060263232404167866 GLQKEIAEL 9 Unmodified _GLQKEIAEL_ 0 0 0 nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.2569274902344 2 500.787307 999.560061 1.3762 0.0006892 4.2754 0.0021411 5.6517 0.0028303 500.7903769541513 54.194 0.45235 48.329 48.048 48.5 -5.8653 39 25 2 0 0 0 0.11314 1 34173 34173 38.176 5.3899 1 11968000 16427 1158 11250 11458 19578 19578 0.060263232404167866 GLQKPKYKI 9 Unmodified _GLQKPKYKI_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.89501953125 3 358.893848 1073.65972 0.046444 1.6668E-05 0.1123 4.0304E-05 0.15875 5.6973E-05 358.89386409587104 21.272 0.13986 21.286 21.233 21.373 0.013796 30 24 2 0 0 0 0.34134 1 10878 10878 15.248 3.7538 1 3757200 + 16428 20051 11251 11459 19579 19579 0.12583185645030426 GLQQQFCLSTF 11 Unmodified _GLQQQFCLSTF_ 0 0 0 ENST00000421112.1_1_2:13142712-13143995:-|nuORF;ENST00000414661.1_1_2:13143779-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8101806640625 2 636.308081 1270.60161 1.3736 0.00087402 -0.43459 -0.00027654 0.93898 0.00059748 636.3080194958649 50.27 0.44668 50.222 49.947 50.393 -0.048824 56 21 3 0 0 0 0.48615 2 27097 27097;27194 17.113 3.2068 1 3927000 16429 13016 11252 11460 19580;19581 19580 -0.022868640625802072 GLQQQFCLSTF 11 Unmodified _GLQQQFCLSTF_ 0 0 0 ENST00000421112.1_1_2:13142712-13143995:-|nuORF;ENST00000414661.1_1_2:13143779-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF ENST00000421112.1_1_2:13142712-13143995:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3079833984375 2 636.308081 1270.60161 -0.12632 -8.0376E-05 -0.27169 -0.00017288 -0.39801 -0.00025326 636.3075371682297 53.564 0.7437 53.5 52.845 53.589 -0.063423 60 38 2 0 0 0 0.48615 1 28893 28893 17.113 0.96379 1 5787900 16430 13016 11252 11460 19582 19582 -0.022868640625802072 GLQRCPFSFTF 11 Unmodified _GLQRCPFSFTF_ 0 0 0 REV__ENSG00000160883|ENST00000292432|HK3 REV__ENSG00000160883|ENST00000292432|HK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 50.041 1 50.041 49.541 50.541 0 0 0 0 0.93893 1 27569 27569 1.3296 0 1 + 16431 21572 11253 11461 19583 19583 -0.01606853963062349 GLQRVASPA 9 Unmodified _GLQRVASPA_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2748107910156 2 449.758884 897.503215 0.44308 0.00019928 -0.63287 -0.00028464 -0.18979 -8.536E-05 449.7585981224298 38.111 0.23945 38.111 37.925 38.165 0 21 11 2 0 0 0 0.16785 1 20294 20294 16.942 1.0951 1 2382700 16432 8645 11254 11462 19584 19584 0.05036320474562217 GLQSPGNIF 9 Unmodified _GLQSPGNIF_ 0 0 0 nc|ENSG00000122145|Q9Y458-2|TBX22;ENSG00000122145|ENST00000373296|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.4855346679688 1 932.483608 931.476331 0.65384 0.0006097 0.20758 0.00019357 0.86142 0.00080326 932.4841354439443 50.744 0.26791 50.33 50.17 50.438 -0.41351 28 12 3 0 0 0 0.2143 1 27274 27274 21.747 1.293 1 3632600 16433 3625 11255 11463 19585 19585 0.007852118633763894 GLQTLIYIL 9 Unmodified _GLQTLIYIL_ 0 0 0 REV__ENSG00000169208|ENST00000641040|OR10G3 REV__ENSG00000169208|ENST00000641040|OR10G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3203735351562 2 517.318243 1032.62193 0.23112 0.00011956 0.41177 0.00021302 0.64289 0.00033258 517.3184690815641 59.272 0.31722 58.781 58.604 58.921 -0.49079 36 14 3 0 0 0 0.1773 2 32192 32192;32295 25.399 0 1 2976300 + 16434 22385 11256 11464 19586;19587 19586 0.10692674659549084 GLQTLIYIL 9 Unmodified _GLQTLIYIL_ 0 0 0 REV__ENSG00000169208|ENST00000641040|OR10G3 REV__ENSG00000169208|ENST00000641040|OR10G3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 517.318243 1032.62193 0.23112 0.00011956 0.41177 0.00021302 0.64289 0.00033258 517.3184690815641 59.272 0.31722 58.781 58.604 58.921 -0.49079 -0.028534 0.00016173 NaN 25.399 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2976300 + 16435 22385 11256 11464 0.10692674659549084 GLQTLIYIL 9 Unmodified _GLQTLIYIL_ 0 0 0 REV__ENSG00000169208|ENST00000641040|OR10G3 REV__ENSG00000169208|ENST00000641040|OR10G3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.318243 1032.62193 0.55528 0.00028725 0.1649 8.5304E-05 0.72017 0.00037256 517.3182705018899 58.899 0.45784 58.838 58.607 59.065 -0.060719 0.028534 -9.3693E-05 NaN 25.399 73 22 4 NaN NaN NaN NaN 0 NaN NaN 0 28482000 + 16436 22385 11256 11464 0.10692674659549084 GLQVLNVHF 9 Unmodified _GLQVLNVHF_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7913818359375 2 513.790184 1025.56581 0.28302 0.00014541 1.2746 0.00065488 1.5576 0.0008003 513.7906679002008 72.665 0.40395 72.707 72.378 72.782 0.041725 31 18 2 0 0 0 0.54444 1 39940 39940 4.756 0.42677 1 2316300 16437 263 11257 11465 19588 19588 0.05405466542742943 GLRCGRGFKG 10 Unmodified _GLRCGRGFKG_ 0 0 0 ENST00000468844.1_1_X:118925076-118925472:-|nuORF ENST00000468844.1_1_X:118925076-118925472:-|nuORF ENST00000468844.1_1_X:118925076-118925472:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.859619140625 3 350.859032 1049.55527 -0.53748 -0.00018858 3.9034 0.0013695 3.3659 0.001181 351.194801870451 26.712 0.35748 26.712 26.488 26.846 0 22 16 2 0 0 0 0.71123 1 13749 13749 0.69767 0 1 582410 16438 13820 11258 11466 19589 19589 0.032471606166836864 GLREAPIGI 9 Unmodified _GLREAPIGI_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2770080566406 2 463.276909 924.539266 0.45196 0.00020938 -2.9383 -0.0013613 -2.4864 -0.0011519 463.2750365389833 52.413 0.46791 52.413 52.129 52.596 0 44 20 3 0 0 0 0.25681 1 28898 28898 19.257 2.1441 1 5461600 + 16439 22370 11259 11467 19590 19590 0.07397777651419801 GLREAPIGI 9 Unmodified _GLREAPIGI_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2769775390625 2 463.276909 924.539266 0.30075 0.00013933 -0.58717 -0.00027202 -0.28642 -0.00013269 463.27668071624015 52.668 0.37399 52.235 52.044 52.418 -0.43367 41 18 3 0 0 0 0.1773 1 28548 28548 25.399 3.6527 1 16372000 + 16440 22370 11259 11467 19591 19591 0.07397777651419801 GLREAPIGI 9 Unmodified _GLREAPIGI_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 463.276909 924.539266 0.45196 0.00020938 -2.9383 -0.0013613 -2.4864 -0.0011519 463.2750365389833 52.413 0.46791 52.413 52.129 52.596 0 0.089348 -0.0019983 NaN 25.399 44 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5461600 + 16441 22370 11259 11467 0.07397777651419801 GLRESLSFY 9 Unmodified _GLRESLSFY_ 0 0 0 nc|ENSG00000101082|Q9H6Q3-3|SLA2;ENSG00000101082|ENST00000262866|SLA2 nc|ENSG00000101082|Q9H6Q3-3|SLA2 nc|ENSG00000101082|Q9H6Q3-3|SLA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7433471679688 2 536.277106 1070.53966 0.26953 0.00014454 -0.41861 -0.00022449 -0.14908 -7.9949E-05 536.2771580422514 49.018 0.20561 48.974 48.887 49.093 -0.04369 15 9 2 0 0 0 0.20528 1 26491 26491 2.0598 0 1 1350200 16442 1910 11260 11468 19592 19592 0.007211525806042118 GLRFWNYN 8 Unmodified _GLRFWNYN_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2642211914062 2 535.264333 1068.51411 NaN NaN NaN NaN NaN NaN NaN 91.841 1 91.36 90.86 91.86 -0.48092 0 0 0 0.97444 1 50203 50203 0.79363 0 1 16443 685 11261 11469 19593 19593 -0.01740277151156988 GLRKYPLLF 9 Unmodified _GLRKYPLLF_ 0 0 0 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5610656738281 3 369.56221 1105.6648 0.24244 8.9597E-05 -0.8619 -0.00031852 -0.61946 -0.00022893 369.56186537258293 61.298 0.51662 61.254 60.987 61.504 -0.04351 64 25 3 0 0 0 0.42049 1 33398 33398 11.495 0.6952 1 15881000 16444 6965 11262 11470 19594 19594 0.11619489507643266 GLRLHRSLQL 10 Unmodified _GLRLHRSLQL_ 0 0 0 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.3324584960938 2 596.867289 1191.72002 1.092 0.00065177 -3.3269 -0.0019857 -2.2349 -0.0013339 596.8647658787519 98.303 0.13339 92.128 92.057 92.19 -6.1757 14 8 2 0 0 0 0.22667 1 65147 65147 6.7232 0 1 12768000 16445 6766 11263 11471 19595 19595 0.13183296028137192 GLRNDYHMNL 10 Unmodified _GLRNDYHMNL_ 0 0 0 nc|ENSG00000013392|Q9UIY3-2|RWDD2A;ENSG00000013392|ENST00000369724|RWDD2A nc|ENSG00000013392|Q9UIY3-2|RWDD2A nc|ENSG00000013392|Q9UIY3-2|RWDD2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7955322265625 2 616.795672 1231.57679 0.38159 0.00023536 1.2409 0.00076536 1.6225 0.0010007 616.7964937778361 85.134 0.31627 85.134 85.071 85.387 0 33 14 3 0 0 0 0.66569 1 47199 47199 6.7232 0.51738 1 897130 16446 474 11264 11472 19596 19596 -0.029734991452642134 GLRNSQLPVGL 11 Unmodified _GLRNSQLPVGL_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2287902832031 3 385.227779 1152.66151 1.5057 0.00058003 -0.48866 -0.00018824 1.017 0.00039179 385.2281117876487 21.755 0.25783 19.02 18.9 19.158 -2.7348 30 13 4 0 0 0 0.65108 1 11689 11689 4.4062 0.28952 1 2247600 + 16447 29964 11265 11473 19597 19597 0.09128194663003342 GLRPTAQLL 9 Unmodified _GLRPTAQLL_ 0 0 0 ENST00000479767.1_1_9:139651519-139651801:-|nuORF ENST00000479767.1_1_9:139651519-139651801:-|nuORF ENST00000479767.1_1_9:139651519-139651801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7985229492188 2 484.798009 967.581465 1.8902 0.00091638 -0.34667 -0.00016807 1.5436 0.00074832 484.7978320263456 62.558 0.5008 56.382 56.122 56.623 -6.1757 39 25 2 0 0 0 0.1773 2 40430 40290;40430 25.399 3.6527 1 27693000 16448 14046 11266 11474 19598;19599 19599 0.09637753059791976 GLRQLQLRAL 10 Unmodified _GLRQLQLRAL_ 0 0 0 ENST00000499203.6_1_5:139486914-139487028:-|nuORF ENST00000499203.6_1_5:139486914-139487028:-|nuORF ENST00000499203.6_1_5:139486914-139487028:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.9163513183594 3 389.915535 1166.72478 0.94404 0.0003681 0.074931 2.9217E-05 1.019 0.00039731 389.9156562038003 22.363 0.22796 19.628 19.505 19.733 -2.7348 18 11 2 0 0 0 0.64183 1 12012 12012 8.9762 1.0308 1 3103800 16449 14433 11267 11475 19600 19600 0.14808180170894047 GLRRPPSVL 9 Unmodified _GLRRPPSVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8114013671875 2 497.811451 993.608348 -0.06131 -3.0521E-05 -0.43136 -0.00021473 -0.49267 -0.00024526 497.8115729094038 32.239 0.35573 32.268 32.058 32.414 0.029743 21 15 2 0 0 0 0.16226 1 16936 16936 26.884 6.43 1 2895800 16450 16188 11268 11476 19601 19601 0.11128861670999868 GLRRPPSVL 9 Unmodified _GLRRPPSVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENST00000478861.1_1_20:62190259-62192809:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7506408691406 2 497.811451 993.608348 0.67372 0.00033539 0.011936 5.9421E-06 0.68566 0.00034133 497.8114719165315 36.313 0.33184 32.12 31.87 32.202 -4.1928 32 19 2 0 0 0 0.20139 1 21156 21156 10.824 4.1008 1 14141000 16451 16188 11268 11476 19602 19602 0.11128861670999868 GLRVKPYI 8 Unmodified _GLRVKPYI_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENSG00000136381|ENST00000258886|IREB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.295654296875 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 53.938 1 53.871 53.371 54.371 -0.066936 0 0 0 0.97348 1 29280 29280 5.7604 0 1 16452 4818;15300 11269 11477 19603 19603 0.10622958410738192 GLRWRRRRRS 10 Unmodified _GLRWRRRRRS_ 0 0 0 REV__ENST00000507139.5_1_5:139028301-139059434:+|nuORF REV__ENST00000507139.5_1_5:139028301-139059434:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.9528198242188 3 466.951976 1397.8341 0.61511 0.00028723 1.8455 0.00086174 2.4606 0.001149 466.9528499656744 18.251 0.13531 15.63 15.574 15.709 -2.6215 12 8 2 0 0 0 0.71981 1 9599 9599 0.69767 0.07084 1 1827000 + 16453 25334 11270 11478 19604 19604 0.15109623633588853 GLSALSGSPP 10 Unmodified _GLSALSGSPP_ 0 0 0 ENST00000567542.5_1_16:68373840-68379672:+|nuORF ENST00000567542.5_1_16:68373840-68379672:+|nuORF ENST00000567542.5_1_16:68373840-68379672:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.221435546875 2 443.23745 884.460347 -0.19101 -8.4662E-05 1.3078 0.00057968 1.1168 0.00049501 443.2373283128261 41.584 0.43877 41.584 41.462 41.901 0 35 22 3 0 0 0 0.12485 1 22392 22392 46.021 13.715 1 19347000 16454 15438 11271 11479 19605 19605 0.013495056264787308 GLSASYPQS 9 Unmodified _GLSASYPQS_ 0 0 0 REV__ENST00000526829.1_1_11:118943968-118944238:+|nuORF REV__ENST00000526829.1_1_11:118943968-118944238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2199096679688 2 455.219257 908.423961 0.36379 0.0001656 0.33133 0.00015083 0.69511 0.00031643 455.21936057261576 40.053 0.57706 35.524 35.247 35.824 -4.5294 125 47 3 0 0 0 0.30562 1 24003 24003 16.942 2.104 1 173560000 + 16455 28379 11272 11480 19606 19606 -0.033913712702315024 GLSCCCSSR 9 Unmodified _GLSCCCSSR_ 0 0 0 REV__ENSG00000138829|ENST00000262464|FBN2 REV__ENSG00000138829|ENST00000262464|FBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.1768493652344 2 458.177698 914.340842 NaN NaN NaN NaN NaN NaN NaN 39.62 1 39.62 39.12 40.12 0 0 0 0 0.82396 1 21246 21246 4.756 1.8668 1 + 16456 20376 11273 11481 19607 19607 -0.11975470585741732 GLSDLQTYL 9 Unmodified _GLSDLQTYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2640686035156 2 505.263665 1008.51278 0.76757 0.00038783 -0.21001 -0.00010611 0.55756 0.00028172 505.2636445195899 74.047 0.4467 74.047 73.786 74.233 0 54 20 3 0 0 0 0.047196 1 41238 41238 46.021 25.567 1 5424700 16457 8967 11274 11482 19608 19608 0.008860439694103661 GLSDLQTYL 9 Unmodified _GLSDLQTYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2640380859375 2 505.263665 1008.51278 0.29725 0.00015019 0.52889 0.00026723 0.82615 0.00041742 505.2639759069753 74.556 0.6081 74.08 73.768 74.376 -0.47588 62 25 4 0 0 0 0.038285 1 40831 40831 50.855 32.72 1 11198000 16458 8967 11274 11482 19609 19609 0.008860439694103661 GLSDLQTYL 9 Unmodified _GLSDLQTYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.2899475097656 2 505.263665 1008.51278 0.62371 0.00031514 1.2767 0.00064507 1.9004 0.00096021 505.26436507355714 82.721 0.66676 76.545 76.179 76.846 -6.1757 97 37 3 0 0 0 0.15672 1 54380 54380 26.884 9.9414 1 110610000 16459 8967 11274 11482 19610 19610 0.008860439694103661 GLSEEDEDTEW 11 Unmodified _GLSEEDEDTEW_ 0 0 0 REV__ENSG00000234127|ENST00000454678|TRIM26 REV__ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.172607421875 3 437.173733 1308.49937 -0.47292 -0.00020675 -1.9649 -0.000859 -2.4378 -0.0010657 437.17274425618194 34.385 0.23401 34.385 34.226 34.46 0 20 11 2 0 0 0 0.73114 1 18078 18078 1.3296 0 1 2434400 + 16460 24415 11275 11483 19611 19611 -0.1425390339113619 GLSEQIREL 9 Unmodified _GLSEQIREL_ 0 0 0 ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;ENST00000557085.1_1_14:53177833-53180694:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7879638671875 2 522.787838 1043.56112 0.94334 0.00049317 -0.83205 -0.00043499 0.11129 5.818E-05 522.787441358322 47.639 0.20755 47.639 47.537 47.745 0 15 9 2 0 0 0 0.34134 1 26123 26123 15.248 4.4246 1 1104800 16461 1838 11276 11484 19612 19612 0.04108537609340601 GLSGSTFYH 9 Unmodified _GLSGSTFYH_ 0 0 0 REV__ENSG00000039537|ENST00000337836|C6 REV__ENSG00000039537|ENST00000337836|C6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2286987304688 2 484.727249 967.439946 0.37629 0.0001824 -0.11282 -5.4687E-05 0.26347 0.00012771 484.7272386497487 58.291 0.24136 57.8 57.701 57.943 -0.49079 20 11 2 0 0 0 0.53666 1 31704 31704 5.2307 5.2307 1 1863800 + 16462 17188 11277 11485 19613 19613 -0.04507665033338526 GLSHFCEHMLF 11 Unmodified _GLSHFCEHMLF_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8681945800781 3 440.866976 1319.5791 0.53 0.00023366 1.5453 0.00068126 2.0753 0.00091492 440.86775258842215 46.483 0.27526 46.146 46.015 46.29 -0.33664 31 13 3 0 0 0 0.35243 1 24862 24862 14.218 0 1 13975000 16463 3478 11278 11486 19614 19614 -0.06790786731835396 GLSLAKRYK 9 Unmodified _GLSLAKRYK_ 0 0 0 REV__nc|ENSG00000004948|P30988-4|CALCR REV__nc|ENSG00000004948|P30988-4|CALCR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.28271484375 2 518.319109 1034.62366 0.49833 0.00025829 -0.40831 -0.00021164 0.090021 4.666E-05 518.3186764405925 43.365 0.213 43.349 43.164 43.377 -0.015667 17 9 2 0 0 0 0.17275 1 23227 23227 15.847 0 1 5251100 + 16464 29480 11279 11487 19615 19615 0.10773728468188892 GLSLEGPLGV 10 Unmodified _GLSLEGPLGV_ 0 0 0 ENST00000484749.5_1_1:228360905-228363211:+|nuORF ENST00000484749.5_1_1:228360905-228363211:+|nuORF ENST00000484749.5_1_1:228360905-228363211:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2684936523438 2 471.26875 940.522947 0.61733 0.00029093 -0.36361 -0.00017136 0.25372 0.00011957 471.2689187270096 47.404 0.24392 47.404 47.25 47.494 0 18 10 3 0 0 0 0.2178 1 25956 25956 32.305 3.2239 1 1631100 16465 14157 11280 11488 19616 19616 0.0503065169467618 GLSNHIAAL 9 Unmodified _GLSNHIAAL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2538146972656 2 448.253434 894.492316 1.1776 0.00052787 0.30892 0.00013848 1.4865 0.00066635 448.2535877913659 48.409 0.34498 43.175 42.988 43.333 -5.2339 36 20 2 0 0 0 0.0090948 2 30087 30087;30229 85.272 23.915 1 29165000 16466 6480 11281 11489 19617;19618 19617 0.04084918100284085 GLSNHIAAL 9 Unmodified _GLSNHIAAL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 448.253434 894.492316 0.26749 0.00011991 0.29706 0.00013316 0.56455 0.00025306 448.253570983062 43.353 0.2194 43.353 43.242 43.461 0 0.088911 -6.772E-06 NaN 85.272 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5053400 16467 6480 11281 11489 0.04084918100284085 GLSNLQLQL 9 Unmodified _GLSNLQLQL_ 0 0 0 REV__ENSG00000187140|ENST00000371116|FOXD3 REV__ENSG00000187140|ENST00000371116|FOXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.287353515625 2 493.287474 984.560395 -0.4134 -0.00020392 0.39141 0.00019308 -0.021985 -1.0845E-05 493.2876761404898 48.503 0.24487 48.503 48.373 48.618 0 27 11 3 0 0 0 0.011968 1 26607 26607 74.929 14.855 1 3541700 + 16468 23624 11282 11490 19619 19619 0.06749742960278127 GLSPSDCHFG 10 Unmodified _GLSPSDCHFG_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2163696289062 2 510.216192 1018.41783 NaN NaN NaN NaN NaN NaN NaN 86.274 1 86.274 85.774 86.774 0 0 0 0 0.98914 1 47791 47791 1.8442 1.0506 1 + 16469 19555 11283 11491 19620 19620 -0.09064212773398594 GLSRPELAVL 10 Unmodified _GLSRPELAVL_ 0 0 0 REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF REV__ENST00000566735.1_1_16:19125342-19127388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.8165283203125 2 527.816399 1053.61824 0.4309 0.00022744 -0.26987 -0.00014244 0.16103 8.4994E-05 527.8162911390557 50.322 0.28525 50.322 50.171 50.456 0 28 12 3 0 0 0 0.34435 1 27750 27750 29.082 0 1 8431200 + 16470 24239 11284 11492 19621 19621 0.09358004885712035 GLSRPHGIVL 10 Unmodified _GLSRPHGIVL_ 0 0 0 REV__ENSG00000187950|ENST00000537054|OVCH1 REV__ENSG00000187950|ENST00000537054|OVCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2140197753906 3 350.213581 1047.61891 1.9287 0.00067544 -0.44385 -0.00015544 1.4848 0.00052 350.21338532792305 37.613 0.47178 33.244 33.001 33.473 -4.3689 68 27 3 0 0 0 0.57893 1 22145 22145 10.899 0 1 53450000 + 16471 23675 11285 11493 19622 19622 0.09700844325402613 GLSRYSLEKL 10 Unmodified _GLSRYSLEKL_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3338012695312 2 583.332413 1164.65027 0.26807 0.00015637 1.0988 0.00064099 1.3669 0.00079736 583.3331295696353 53.033 0.24582 52.582 52.457 52.703 -0.45173 33 12 3 0 0 0 0.077785 1 28659 28659 51.63 11.391 1 4421500 + 16472 22034 11286 11494 19623 19623 0.07453372568852501 GLSRYSLEKL 10 Unmodified _GLSRYSLEKL_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.332413 1164.65027 0.26807 0.00015637 1.0988 0.00064099 1.3669 0.00079736 583.3331295696353 53.033 0.24582 52.582 52.457 52.703 -0.45173 0 0 NaN 51.63 33 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4421500 + 16473 22034 11286 11494 0.07453372568852501 GLSSQICEKF 10 Unmodified _GLSSQICEKF_ 0 0 0 ENST00000573186.5_3_17:7219444-7222432:-|nuORF ENST00000573186.5_3_17:7219444-7222432:-|nuORF ENST00000573186.5_3_17:7219444-7222432:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.77734375 2 556.276249 1110.53795 0.42861 0.00023842 2.2835 0.0012703 2.7121 0.0015087 556.2776474331508 65.66 0.4986 65.66 65.419 65.918 0 49 22 3 0 0 0 0.22327 1 36561 36561 19.257 11.968 1 5507400 16474 15496 11287 11495 19624 19624 -0.01290224499643955 GLSTEGIYRV 10 Unmodified _GLSTEGIYRV_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.79443359375 2 547.795663 1093.57677 0.49924 0.00027348 0.072157 3.9527E-05 0.5714 0.00031301 547.7955457787396 46.636 0.2333 46.3 46.19 46.424 -0.33664 21 11 2 0 0 0 0.051223 1 24949 24949 57.722 17.772 1 14655000 16475 6681 11288 11496 19625 19625 0.03372824126358864 GLSVLSPCSST 11 Unmodified _GLSVLSPCSST_ 0 0 0 ENST00000510358.5_1_5:176830573-176831188:-|nuORF ENST00000510358.5_1_5:176830573-176831188:-|nuORF ENST00000510358.5_1_5:176830573-176831188:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2969360351562 2 525.760432 1049.50631 -0.25865 -0.00013599 -1.1473 -0.00060322 -1.406 -0.0007392 526.2618104423059 51.511 0.1299 51.097 51.046 51.176 -0.41351 8 6 2 0 0 0 0.28752 1 27764 27764 9.3831 0 1 1195400 16476 14585 11289 11497 19626 19626 -0.0164621725359666 GLTDNIHLV 9 Unmodified _GLTDNIHLV_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2733154296875 2 491.271824 980.529095 0.42234 0.00020748 -0.68613 -0.00033708 -0.26379 -0.00012959 491.27152831822445 57.795 0.23421 57.795 57.657 57.891 0 18 10 3 0 0 0 0.03568 1 32156 32156 52.268 10.174 1 3992400 16477 1992 11290 11498 19627 19627 0.038051699261814065 GLTDNIHLV 9 Unmodified _GLTDNIHLV_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2723693847656 2 491.271824 980.529095 0.86302 0.00042398 -3.3008 -0.0016216 -2.4378 -0.0011976 491.27091161722217 64.925 0.43156 58.749 58.509 58.941 -6.1757 33 23 2 0 0 0 0.10734 1 42116 42116 32.305 6.9062 1 12662000 16478 1992 11290 11498 19628 19628 0.038051699261814065 GLTEGIWQL 9 Unmodified _GLTEGIWQL_ 0 0 0 nc|ENSG00000087206|Q96RL1-2|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1;ENSG00000087206|ENST00000511320|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7744750976562 2 508.7742 1015.53385 0.20641 0.00010502 0.47311 0.0002407 0.67952 0.00034572 508.7743881137081 86.579 0.2868 86.076 85.955 86.242 -0.50318 23 11 3 0 0 0 0.37804 1 47396 47396 13.508 4.1604 1 957240 16479 1459 11291 11499 19629 19629 0.02670054068948957 GLTEGIWQL 9 Unmodified _GLTEGIWQL_ 0 0 0 nc|ENSG00000087206|Q96RL1-2|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1;ENSG00000087206|ENST00000511320|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2763366699219 2 508.7742 1015.53385 0.73527 0.00037409 -1.0008 -0.00050917 -0.26551 -0.00013509 508.7740717989893 73.876 0.88739 67.701 67.326 68.213 -6.1757 160 44 5 0 0 0 0.14602 1 48483 48483 28.487 5.3384 1 121370000 16480 1459 11291 11499 19630 19630 0.02670054068948957 GLTEGIWQL 9 Unmodified _GLTEGIWQL_ 0 0 0 nc|ENSG00000087206|Q96RL1-2|UIMC1;nc|ENSG00000087206|Q96RL1-3|UIMC1;ENSG00000087206|ENST00000511320|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 nc|ENSG00000087206|Q96RL1-2|UIMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2740173339844 2 508.7742 1015.53385 1.2073 0.00061426 -0.56093 -0.00028539 0.64639 0.00032887 508.77427078441474 96.6 0.35448 90.424 90.32 90.674 -6.1757 31 20 2 0 0 0 0.0086179 1 64008 64008 89.427 7.8137 1 7597200 16481 1459 11291 11499 19631 19631 0.02670054068948957 GLTKELRYP 9 Unmodified _GLTKELRYP_ 0 0 0 REV__nc|ENSG00000174672|Q8IWQ3-3|BRSK2 REV__nc|ENSG00000174672|Q8IWQ3-3|BRSK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2597045898438 2 538.808574 1075.60259 0.614 0.00033083 -1.1333 -0.00061061 -0.51925 -0.00027978 538.8079461537569 75.426 0.20202 74.949 74.821 75.023 -0.47714 19 12 2 0 0 0 0.19613 1 41277 41277 12.532 0.89125 1 1082400 + 16482 22807 11292 11500 19632 19632 0.06781718368665679 GLTLGAGLSL 10 Unmodified _GLTLGAGLSL_ 0 0 0 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2723083496094 2 451.271293 900.528032 0.30193 0.00013625 2.0534 0.00092666 2.3554 0.0010629 451.2723499694663 76.045 0.53468 75.565 75.252 75.787 -0.47945 57 22 3 0 0 0 0.092434 1 41610 41610 48.346 1.425 1 7851700 16483 5042 11293 11501 19633 19633 0.07378955557294375 GLTLGAGLSL 10 Unmodified _GLTLGAGLSL_ 0 0 0 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2718200683594 2 451.271293 900.528032 1.3317 0.00060094 -0.27362 -0.00012348 1.058 0.00047746 451.27112639765056 87.871 1.1325 81.695 81.017 82.149 -6.1757 109 62 2 0 0 0 0.037795 2 57819 57819;57955 64.236 10.661 1 33003000 16484 5042 11293 11501 19634;19635 19634 0.07378955557294375 GLTPFSCLSL 10 Unmodified _GLTPFSCLSL_ 0 0 0 ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2686157226562 2 519.270435 1036.52632 -0.017973 -9.3328E-06 -3.1654 -0.0016437 -3.1834 -0.0016531 519.2690908424165 66.035 0.19603 65.552 65.434 65.63 -0.48323 13 8 2 0 0 0 0.50944 1 36067 36067 15.847 1.2655 1 2139000 16485 11170 11294 11502 19636 19636 0.009515784770428581 GLTSAIQAV 9 Unmodified _GLTSAIQAV_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2482299804688 2 430.247818 858.481082 0.89933 0.00038693 -0.099599 -4.2852E-05 0.79973 0.00034408 430.2477286709481 54.586 0.22752 54.586 54.462 54.689 0 15 9 2 0 0 0 0.078417 1 30301 30301 38.151 7.9264 1 1752200 16486 6858 11295 11503 19637 19637 0.04618096006140604 GLTSAIQAV 9 Unmodified _GLTSAIQAV_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.489501953125 1 859.488359 858.481082 -0.28535 -0.00024525 0.66765 0.00057384 0.3823 0.00032858 859.4893738326424 55.119 0.16476 54.641 54.548 54.712 -0.47798 12 7 2 0 0 0 0.015445 1 29879 29879 68.081 19.735 1 1030900 16487 6858 11295 11503 19638 19638 0.04618096006140604 GLTSAIQAV 9 Unmodified _GLTSAIQAV_ 0 0 0 ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 ENSG00000162419|ENST00000373816|GMEB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2486572265625 2 430.247818 858.481082 2.1452 0.00092297 -1.1307 -0.00048647 1.0145 0.0004365 430.24715574688423 62.833 0.338 56.657 56.442 56.78 -6.1757 25 16 2 0 0 0 0.052168 1 40522 40522 44.407 8.3628 1 10282000 16488 6858 11295 11503 19639 19639 0.04618096006140604 GLTSSAEVY 9 Unmodified _GLTSSAEVY_ 0 0 0 ENSG00000157119|ENST00000287777|KLHL40 ENSG00000157119|ENST00000287777|KLHL40 ENSG00000157119|ENST00000287777|KLHL40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.6634826660156 2 463.726915 925.439277 0.2381 0.00011041 0.15397 7.1399E-05 0.39207 0.00018181 463.7271543165813 45.094 0.21271 45.094 44.996 45.209 0 15 10 2 0 0 0 0.097209 1 24575 24575 38.151 9.6643 1 2990000 16489 6502 11296 11504 19640 19640 -0.026425044730444824 GLTSTDLLFHL 11 Unmodified _GLTSTDLLFHL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8330688476562 2 608.832246 1215.64994 0.48622 0.00029603 0.70561 0.0004296 1.1918 0.00072562 608.8324641052188 88.612 0.36144 88.107 87.912 88.273 -0.50423 47 15 4 0 0 0 0.054439 2 48415 48415;48509 49.933 36.891 1 3309300 16490 484 11297 11505 19641;19642 19641 0.05073952849011221 GLTSTDLLFHL 11 Unmodified _GLTSTDLLFHL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8347778320312 2 608.832246 1215.64994 0.12899 7.8533E-05 0.36589 0.00022276 0.49488 0.0003013 608.8323840424482 87.985 0.16481 88.039 87.908 88.073 0.053352 10 6 2 0 0 0 2.7161E-06 1 48907 48907 100.37 60.422 1 12980000 16491 484 11297 11505 19643 19643 0.05073952849011221 GLTSTDLLFHL 11 Unmodified _GLTSTDLLFHL_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8322143554688 2 608.832246 1215.64994 0.2323 0.00014143 1.0495 0.00063897 1.2818 0.0007804 608.8323237484716 99.062 0.16471 92.886 92.793 92.957 -6.1757 23 9 3 0 0 0 0.0033239 1 65841 65841 78.149 45.364 1 164930000 16492 484 11297 11505 19644 19644 0.05073952849011221 GLTSVKINV 9 Unmodified _GLTSVKINV_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7518615722656 2 465.784567 929.554582 0.73951 0.00034445 0.24407 0.00011368 0.98358 0.00045814 465.78453306763475 50.088 0.2044 49.696 49.568 49.772 -0.3923 19 9 3 0 0 0 0.10271 1 26949 26949 39.95 18.413 1 2697300 16493 1378 11298 11506 19645 19645 0.08698644448622872 GLTSVKINV 9 Unmodified _GLTSVKINV_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.785400390625 2 465.784567 929.554582 0.55629 0.00025911 0.87341 0.00040682 1.4297 0.00066593 465.7852606374085 55.827 0.33668 49.906 49.721 50.058 -5.9211 34 19 2 0 0 0 0.039985 1 35527 35527 49.933 19.296 1 17863000 16494 1378 11298 11506 19646 19646 0.08698644448622872 GLTSVKINV 9 Unmodified _GLTSVKINV_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 465.784567 929.554582 1.0193 0.00047477 -0.46341 -0.00021585 0.55588 0.00025892 465.7842793933258 49.71 0.15755 49.662 49.626 49.784 -0.048828 -0.093018 -0.00074555 NaN 49.933 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 820240 16495 1378 11298 11506 0.08698644448622872 GLTVALRLA 9 Unmodified _GLTVALRLA_ 0 0 0 ENST00000535149.5_1_X:70520727-70520889:+|nuORF ENST00000535149.5_1_X:70520727-70520889:+|nuORF ENST00000535149.5_1_X:70520727-70520889:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 913.58642578125 1 913.582928 912.575651 3.732 0.0034095 -2.6939 -0.0024611 1.0381 0.00094842 913.5803739925728 98.018 0.30811 98 97.791 98.099 -0.018188 26 10 4 0 0 0 0.026094 1 54423 54423 57.471 0 1 25925000 16496 14967 11299 11507 19647 19647 0.11586654548125352 GLTYNDFLI 9 Unmodified _GLTYNDFLI_ 0 0 0 ENSG00000178035|ENST00000326739|IMPDH2;ENST00000496837.1_1_3:49065635-49066789:-|nuORF;ENST00000485500.1_1_3:49066148-49066789:-|nuORF;nc|ENSG00000106348|P20839-2|IMPDH1;nc|ENSG00000106348|P20839-4|IMPDH1;nc|ENSG00000106348|P20839|IMPDH1;nc|ENSG00000106348|P20839-3|IMPDH1;nc|ENSG00000106348|P20839-5|IMPDH1;ENSG00000106348|ENST00000338791|IMPDH1 ENSG00000178035|ENST00000326739|IMPDH2 ENSG00000178035|ENST00000326739|IMPDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2744140625 2 528.274032 1054.53351 0.33077 0.00017474 0.4247 0.00022436 0.75547 0.0003991 528.2742330821768 93.012 0.41447 92.555 92.376 92.79 -0.4574 57 22 3 0 0 0 0.28047 2 50875 50776;50875 18.135 4.6271 1 5264400 16497 8724 11300 11508 19648;19649 19649 0.008426343491009902 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2719116210938 2 451.271293 900.528032 0.61324 0.00027674 0.29518 0.00013321 0.90842 0.00040994 451.2714415998086 75.568 0.36205 75.616 75.411 75.773 0.047943 39 16 3 0 0 0 0.0094915 1 41636 41636 81.864 3.8797 1 5905800 16498 3962 11301 11509 19650 19650 0.07378955557271638 GLVATLQSL 9 Unmodified _GLVATLQSL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2712707519531 2 451.271293 900.528032 1.3317 0.00060094 -0.27362 -0.00012348 1.058 0.00047746 451.27112639765056 87.871 1.1325 81.695 81.017 82.149 -6.1757 109 62 2 0 0 0 0.016184 3 58085 57695;58085;58259 67.344 3.1075 1 33003000 16499 3962 11301 11509 19651;19652;19653 19652 0.07378955557271638 GLVDDVEKLK 10 Unmodified _GLVDDVEKLK_ 0 0 0 REV__ENSG00000161980|ENST00000293860|POLR3K REV__ENSG00000161980|ENST00000293860|POLR3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5491333007812 3 372.548406 1114.62339 1.3563 0.00050531 -0.0077478 -2.8864E-06 1.3486 0.00050242 372.5483260062008 58.252 0.9781 52.218 51.982 52.96 -6.0344 112 53 4 0 0 0 0.24975 1 37205 37205 30.431 1.1504 1 130320000 + 16500 21618 11302 11510 19654 19654 0.07066263957653973 GLVDEKALAQA 11 Unmodified _GLVDEKALAQA_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;nc|ENSG00000159692|Q13363|CTBP1;ENSG00000159692|ENST00000382952|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000159692|Q13363|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.808349609375 2 557.808771 1113.60299 0.34834 0.00019431 -0.64898 -0.00036201 -0.30064 -0.0001677 557.8082576395137 42.116 0.26799 42.116 41.992 42.26 0 24 13 2 0 0 0 0.00053139 1 22759 22759 88.364 50.188 1 28515000 16501 14644;6668 11303 11511 19655 19655 0.050730932978467536 GLVDEKALAQA 11 Unmodified _GLVDEKALAQA_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;nc|ENSG00000159692|Q13363|CTBP1;ENSG00000159692|ENST00000382952|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000159692|Q13363|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.8096923828125 2 557.808771 1113.60299 NaN NaN NaN NaN NaN NaN NaN 48.495 1 43.099 42.599 43.599 -5.3961 0 0 0 1.6347E-09 1 30215 30215 110.79 59.163 1 16502 14644;6668 11303 11511 19656 19656 0.050730932978467536 GLVDEKALAQA 11 Unmodified _GLVDEKALAQA_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2;ENST00000511907.1_1_4:1208072-1210006:-|nuORF;nc|ENSG00000159692|Q13363|CTBP1;ENSG00000159692|ENST00000382952|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000159692|Q13363|CTBP1 ENST00000513884.1_1_5:97912076-97912961:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.8087768554688 2 557.808771 1113.60299 NaN NaN NaN NaN NaN NaN NaN 48.68 1 43.284 42.784 43.784 -5.3961 0 0 0 4.7034E-07 1 30345 30345 94.909 56.733 1 16503 14644;6668 11303 11511 19657 19657 0.050730932978467536 GLVDGLFLV 9 Unmodified _GLVDGLFLV_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.546142578125 1 932.545145 931.537869 0.26903 0.00025088 0.56575 0.00052759 0.83479 0.00077848 932.5456133204151 100.64 0.10145 100.5 100.44 100.54 -0.13293 5 3 2 0 0 0 0.052168 1 54931 54931 44.407 8.3628 1 1161400 16504 5370 11304 11512 19658 19658 0.06936143562654706 GLVDGLFLV 9 Unmodified _GLVDGLFLV_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.5462036132812 1 932.545145 931.537869 0.83541 0.00077905 -0.12575 -0.00011726 0.70966 0.00066179 932.5449286409182 101.6 0.1104 95.423 95.351 95.461 -6.1757 13 5 3 0 0 0 0.03327 1 68166 68166 53.576 9.1686 1 25017000 16505 5370 11304 11512 19659 19659 0.06936143562654706 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7917785644531 2 478.792392 955.570232 0.48641 0.00023289 -0.65597 -0.00031408 -0.16956 -8.1184E-05 478.7920161468167 59.619 0.41895 59.619 59.4 59.819 0 28 18 2 0 0 0 0.23158 1 33176 33176 20.454 2.3073 1 1182100 16506 302 11305 11513 19660 19660 0.0906693096563913 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.793212890625 2 478.792392 955.570232 0.25397 0.0001216 -0.57743 -0.00027647 -0.32346 -0.00015487 478.7924077356726 60.133 0.37341 59.643 59.392 59.766 -0.49079 48 18 3 0 0 0 0.010611 1 32627 32627 78.728 0 1 11812000 16507 302 11305 11513 19661 19661 0.0906693096563913 GLVDKLQAL 9 Unmodified _GLVDKLQAL_ 0 0 0 ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1 ENST00000566284.1_1_16:57467902-57474840:-|nuORF ENST00000566284.1_1_16:57467902-57474840:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.79296875 2 478.792392 955.570232 0.58636 0.00028075 -1.3567 -0.00064957 -0.77032 -0.00036882 478.7924143554068 66.561 0.36298 60.385 60.156 60.519 -6.1757 30 20 2 0 0 0 0.0082353 1 43273 43273 96.111 10.469 1 11457000 16508 302 11305 11513 19662 19662 0.0906693096563913 GLVDQLVKA 9 Unmodified _GLVDQLVKA_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1;ENST00000482384.1_1_1:109756587-109756749:+|nuORF ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2479248046875 2 471.784567 941.554582 -0.27237 -0.0001285 -0.43689 -0.00020612 -0.70926 -0.00033462 471.78402220068534 56.707 0.21374 56.222 56.136 56.349 -0.48554 15 10 2 0 0 0 0.1176 1 30803 30803 36.127 17.981 1 2518600 16509 590 11306 11514 19663 19663 0.0814664444861819 GLVDQLVKA 9 Unmodified _GLVDQLVKA_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1;ENST00000482384.1_1_1:109756587-109756749:+|nuORF ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7849731445312 2 471.784567 941.554582 1.1468 0.00054102 1.1817 0.00055751 2.3285 0.0010985 471.7844049379029 63.764 0.25002 57.588 57.487 57.737 -6.1757 23 13 2 0 0 0 0.028475 1 41252 41252 56.177 22.075 1 10969000 16510 590 11306 11514 19664 19664 0.0814664444861819 GLVFTEGPLYR 11 Unmodified _GLVFTEGPLYR_ 0 0 0 REV__nc|ENSG00000010803|Q96GD3-6|SCMH1 REV__nc|ENSG00000010803|Q96GD3-6|SCMH1 MSMS AL20221201_MKP_PDAC_01 4 417.8964538574219 3 417.895917 1250.66592 NaN NaN NaN NaN NaN NaN NaN 17.247 1 14.661 14.161 15.161 -2.5866 0 0 0 0.94184 1 9001 9001 0.40827 0 1 + 16511 17049 11307 11515 19665 19665 0.05061659085913561 GLVFTSLMPA 10 Unmodified _GLVFTSLMPA_ 0 0 0 REV__ENSG00000165186|ENST00000379361|PTCHD1 REV__ENSG00000165186|ENST00000379361|PTCHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2740478515625 2 518.280803 1034.54705 NaN NaN NaN NaN NaN NaN NaN 58.632 1 58.632 58.132 59.132 0 0 0 0 0.81521 1 32648 32648 11.64 2.2929 1 + 16512 21990 11308 11516 19666 19666 0.03116168856695367 GLVGLQHR 8 Unmodified _GLVGLQHR_ 0 0 0 ENSG00000128059|ENST00000264220|PPAT ENSG00000128059|ENST00000264220|PPAT ENSG00000128059|ENST00000264220|PPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.261962890625 2 440.261594 878.508634 0.63835 0.00028104 -0.26435 -0.00011638 0.374 0.00016466 440.26122217944044 78.578 0.50087 78.63 78.276 78.777 0.052452 30 20 3 0 0 0 0.80676 1 43411 43411 2.5775 0 1 1659000 16513 4047 11309 11517 19667 19667 0.06452044057039075 GLVHGLPYV 9 Unmodified _GLVHGLPYV_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7741394042969 2 477.774003 953.533452 0.37402 0.0001787 -0.39906 -0.00019066 -0.025042 -1.1964E-05 477.77389590532187 61.762 0.16361 61.274 61.202 61.366 -0.48764 12 7 2 0 0 0 0.46577 1 33659 33659 9.3474 0.75416 1 910810 16514 5897 11310 11518 19668 19668 0.054826791397545094 GLVHPFKMK 9 Unmodified _GLVHPFKMK_ 0 0 0 ENST00000512235.1_1_4:122261523-122301889:-|nuORF;ENSG00000186867|ENST00000394427|QRFPR ENST00000512235.1_1_4:122261523-122301889:-|nuORF ENST00000512235.1_1_4:122261523-122301889:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8065795898438 2 528.80478 1055.59501 0.35197 0.00018613 2.3749 0.0012559 2.7269 0.001442 528.8060796523599 62.584 0.17297 62.584 62.506 62.679 0 13 7 2 0 0 0 0.2001 1 34942 34942 23.148 0 1 886740 16515 9514 11311 11519 19669 19669 0.06943287567401057 GLVIYRWQL 9 Unmodified _GLVIYRWQL_ 0 0 0 ENST00000273814.7_1_4:953005-953860:-|nuORF ENST00000273814.7_1_4:953005-953860:-|nuORF ENST00000273814.7_1_4:953005-953860:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8929443359375 3 383.225598 1146.65496 1.1702 0.00044844 0.69983 0.00026819 1.87 0.00071663 383.2258690161958 49.912 0.30371 49.863 49.743 50.046 -0.048824 25 14 2 0 0 0 0.21874 1 27055 27055 1.1933 0.12188 1 2157600 16516 11381 11312 11520 19670 19670 0.0875030150227758 GLVKEYLDF 9 Unmodified _GLVKEYLDF_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENST00000482392.1_1_2:232070951-232079819:+|nuORF ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.8623962402344 3 361.862214 1082.56481 NaN NaN NaN NaN NaN NaN NaN 16.773 1 16.774 16.274 17.274 0.0010548 0 0 0 0.85737 1 8293 8293 0.26902 0 1 16517 4763 11313 11521 19671 19671 0.02683207383165609 GLVMRNPF 8 Unmodified _GLVMRNPF_ 0 0 0 REV__ENST00000531428.1_1_11:17099415-17121458:-|nuORF REV__ENST00000531428.1_1_11:17099415-17121458:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2547607421875 2 467.25238 932.490207 0.66998 0.00031305 2.3834 0.0011137 3.0534 0.0014267 467.2556187055653 74.618 0.30389 74.142 73.954 74.258 -0.47588 28 12 3 0 0 0 0.80044 1 40815 40815 6.3541 3.4649 1 670430 + 16518 17057 11314 11522 19672 19672 0.02126166090829429 GLVPFLVSV 9 Unmodified _GLVPFLVSV_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.5650024414062 1 930.565881 929.558604 1.4029 0.0013055 0.77445 0.00072068 2.1773 0.0020261 930.5657427541997 100.53 0.10924 100.49 100.43 100.53 -0.04216 5 3 2 0 0 0 0.016184 1 55847 55847 67.344 13.768 1 10981000 16519 9058 11315 11523 19673 19673 0.09100733942329953 GLVPFLVSV 9 Unmodified _GLVPFLVSV_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 930.5673217773438 1 930.565881 929.558604 0.9375 0.0008724 0.20805 0.0001936 1.1455 0.001066 930.565920764113 101.42 0.13093 95.242 95.178 95.309 -6.1757 16 6 3 0 0 0 0.0086179 1 68029 68029 89.427 42.506 1 97364000 16520 9058 11315 11523 19674 19674 0.09100733942329953 GLVPFLVSV 9 Unmodified _GLVPFLVSV_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7868957519531 2 465.786579 929.558604 0.86059 0.00040085 0.5522 0.00025721 1.4128 0.00065806 465.78658802170935 101.42 0.13093 95.248 95.178 95.309 -6.1757 14 6 3 0 0 0 0.068777 1 68053 68053 40.449 15.775 1 26626000 16521 9058 11315 11523 19675 19675 0.09100733942329953 GLVQLEIGRL 10 Unmodified _GLVQLEIGRL_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ nc|ENSG00000132849|Q8NI35|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5600280761719 3 366.560758 1096.66044 0.79836 0.00029265 -0.93129 -0.00034137 -0.13293 -4.8726E-05 366.5602771810479 15.825 0.14301 13.298 13.23 13.373 -2.5273 65 35 2 0 0 0 0.5802 1 8141 8141 12.175 0.68004 1 5993000 16522 4457 11316 11524 19676 19676 0.11597980294095578 GLVQLLHRLF 10 Unmodified _GLVQLLHRLF_ 0 0 0 REV__ENST00000390665.8_1_X:306258-308059:-|nuORF REV__ENST00000390665.8_1_X:306258-308059:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.17333984375 3 399.248514 1194.72371 NaN NaN NaN NaN NaN NaN NaN 37.537 1 37.537 37.037 38.037 0 0 0 0 0.98692 1 19982 19982 2.086 0.63089 1 + 16523 26369 11317 11525 19677 19677 0.13413965801987615 GLVSAPLPTF 10 Unmodified _GLVSAPLPTF_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2876281738281 2 501.286943 1000.55933 0.10539 5.2831E-05 1.2266 0.00061488 1.332 0.00066771 501.2877588449726 77.011 0.47018 77.061 76.776 77.246 0.05011 33 19 3 0 0 0 0.33553 1 42501 42501 25.399 7.253 1 3519800 16524 15971 11318 11526 19678 19678 0.05907528591365008 GLVSAPLPTF 10 Unmodified _GLVSAPLPTF_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|192|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2875366210938 2 501.286943 1000.55933 1.071 0.00053688 0.045603 2.286E-05 1.1166 0.00055974 501.2872696671733 81.168 0.37838 81.227 81.019 81.397 0.059929 37 14 3 0 0 0 0.1028 1 44853 44853 46.021 17.534 1 5323000 16525 15971 11318 11526 19679 19679 0.05907528591365008 GLVTDPFAEL 10 Unmodified _GLVTDPFAEL_ 0 0 0 ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A ENSG00000185313|ENST00000449082|SCN10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7764282226562 2 531.279315 1060.54408 -0.078976 -4.1958E-05 -3.6055 -0.0019155 -3.6845 -0.0019575 531.2774907201401 60.425 0.46311 59.935 59.766 60.229 -0.49079 29 22 2 0 0 0 0.22149 1 32955 32955 14.838 3.198 1 3809400 16526 9361 11319 11527 19680 19680 0.01622617003522464 GLVTELQQI 9 Unmodified _GLVTELQQI_ 0 0 0 REV__ENSG00000119285|ENST00000366582|HEATR1 REV__ENSG00000119285|ENST00000366582|HEATR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7880554199219 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 53.483 1 53.031 52.531 53.531 -0.45173 0 0 0 0.7243 1 28936 28936 8.5933 1.304 1 + 16527 19186 11320 11528 19681 19681 0.06026323240439524 GLVTVLCMSL 10 Unmodified _GLVTVLCMSL_ 0 0 0 REV__ENST00000524483.1_1_8:11777903-11778179:-|nuORF REV__ENST00000524483.1_1_8:11777903-11778179:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2711181640625 2 518.282489 1034.55042 NaN NaN NaN NaN NaN NaN NaN 58.422 1 58.422 57.922 58.922 0 0 0 0 0.5926 1 32529 32529 21.747 4.8044 1 + 16528 28330 11321 11529 19682 19682 0.03453095639042658 GLWEQENHL 9 Unmodified _GLWEQENHL_ 0 0 0 ENSG00000134152|ENST00000256544|KATNBL1 ENSG00000134152|ENST00000256544|KATNBL1 ENSG00000134152|ENST00000256544|KATNBL1 MSMS AL20221201_MKP_PDAC_01 4 563.269287109375 2 563.269813 1124.52507 NaN NaN NaN NaN NaN NaN NaN 52.985 1 47.181 46.681 47.681 -5.8042 0 0 0 0.041018 1 33453 33453 68.081 45.344 1 16529 4562 11322 11530 19683 19683 -0.03220919567525016 GLWGHALLL 9 Unmodified _GLWGHALLL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2905883789062 2 490.28982 978.565087 1.7986 0.00088182 -1.097 -0.00053784 0.70159 0.00034398 490.2894363923339 82.191 0.24426 82.253 82.103 82.347 0.061996 19 9 3 0 0 0 0.028712 1 45491 45491 56.048 19.582 1 7121700 16530 5929 11323 11531 19684 19684 0.07494671893698523 GLWGHALLL 9 Unmodified _GLWGHALLL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2908020019531 2 490.28982 978.565087 0.66163 0.00032439 0.35089 0.00017204 1.0125 0.00049643 490.2899834030183 99.14 0.11421 92.964 92.894 93.009 -6.1757 15 6 3 0 0 0 0.047696 1 65931 65931 45.75 5.3014 1 71318000 16531 5929 11323 11531 19685 19685 0.07494671893698523 GLWKIKDNP 9 Unmodified _GLWKIKDNP_ 0 0 0 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5389099121094 3 357.537953 1069.59203 -0.17959 -6.4209E-05 2.2297 0.00079722 2.0502 0.00073301 357.53864428443876 44.943 0.31933 44.921 44.657 44.976 -0.022064 21 15 2 0 0 0 0.54444 1 24068 24068 2.7352 1.5419 1 11035000 16532 5840 11324 11532 19686 19686 0.06001735714221468 GLWRMVMWPE 10 Unmodified _GLWRMVMWPE_ 0 0 0 REV__ENST00000507866.6_1_4:7743315-7743591:+|nuORF REV__ENST00000507866.6_1_4:7743315-7743591:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5500183105469 3 435.547466 1303.62057 1.0897 0.00047463 1.0153 0.00044221 2.105 0.00091684 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.66569 1 10636 10636 6.1918 2.8361 1 1375000000 + 16533 28107 11325 11533 19687 19687 -0.019096059724915904 GLWSLEPRL 9 Unmodified _GLWSLEPRL_ 0 0 0 REV__nc|ENSG00000105695|P20916-2|MAG REV__nc|ENSG00000105695|P20916-2|MAG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5387268066406 3 357.537953 1069.59203 NaN NaN NaN NaN NaN NaN NaN 47.863 1 47.825 47.325 48.325 -0.038643 0 0 0 0.84564 1 25798 25798 1.0715 0 1 + 16534 18448 11326 11534 19688 19688 0.06001735714221468 GLYDMHIQL 9 Unmodified _GLYDMHIQL_ 0 0 0 nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7;ENST00000567789.1_1_16:1498340-1499128:-|nuORF;ENST00000565092.6_1_16:1496634-1499128:-|nuORF;ENST00000563642.6_1_16:1496634-1499487:-|nuORF nc|ENSG00000103249|P51798-2|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 MSMS AL20221201_MKP_PDAC_01 4 545.2725219726562 2 545.273509 1088.53247 NaN NaN NaN NaN NaN NaN NaN 84.198 1 78.022 77.522 78.522 -6.1757 0 0 0 0.20153 1 55383 55383 30.637 11.275 1 16535 2118 11327 11535 19689 19689 -0.008259032914338604 GLYEGLTWL 9 Unmodified _GLYEGLTWL_ 0 0 0 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1051.21044921875 1 1051.54587 1050.5386 2.6401 0.0027762 -1.0362 -0.0010896 1.6039 0.0016866 1051.545428898579 96.196 0.23611 96.189 96.045 96.282 -0.007019 13 7 2 0 0 0 0.029718 1 53425 53425 71.134 29.039 1 3517400 16536 7357 11328 11536 19690 19690 0.015349382117165078 GLYEGLTWL 9 Unmodified _GLYEGLTWL_ 0 0 0 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2767333984375 2 526.276575 1050.5386 0.82668 0.00043506 0.5556 0.0002924 1.3823 0.00072746 526.2768949723613 100.54 0.23403 94.361 94.254 94.488 -6.1757 33 14 4 0 0 0 0.10247 1 67222 67222 44.407 44.407 1 243470000 16537 7357 11328 11536 19691 19691 0.015349382117165078 GLYEGLTWL 9 Unmodified _GLYEGLTWL_ 0 0 0 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 ENSG00000165527|ENST00000298316|ARF6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1051.54587 1050.5386 0.24947 0.00026233 -0.021307 -2.2405E-05 0.22817 0.00023993 1051.5459839676655 96.588 0.32238 96.283 96.131 96.453 -0.30473 0.047211 0.00027119 NaN 71.134 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1291800 16538 7357 11328 11536 0.015349382117165078 GLYEVYSAFG 10 Unmodified _GLYEVYSAFG_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2993774414062 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 90.414 1 89.919 89.419 90.419 -0.49457 0 0 0 0.7417 1 49422 49422 14.838 2.5976 1 + 16539 22154 11329 11537 19692 19692 -0.035299560305929845 GLYEVYSAFG 10 Unmodified _GLYEVYSAFG_ 0 0 0 REV__ENSG00000166825|ENST00000300060|ANPEP REV__ENSG00000166825|ENST00000300060|ANPEP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.262451171875 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 90.472 1 89.978 89.478 90.478 -0.49457 0 0 0 0.7417 1 49453 49453 14.838 0.25658 1 + 16540 22154 11329 11537 19693 19693 -0.035299560305929845 GLYFRRGQ 8 Unmodified _GLYFRRGQ_ 0 0 0 ENSG00000101160|ENST00000217131|CTSZ;ENST00000472025.1_1_20:57581320-57582150:-|nuORF ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.7273864746094 2 498.772326 995.530098 1.2218 0.00060939 -2.4995 -0.0012467 -1.2777 -0.0006373 498.77150513769794 19.949 0.16549 17.293 17.239 17.404 -2.6564 14 8 2 0 0 0 8.7369 1 10603 10603 9.3474 1.4373 1 1093800 16541 1922 11330 11538 19694 19694 0.03215429085753385 GLYGKVEGL 9 Unmodified _GLYGKVEGL_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7201538085938 2 468.263468 934.512382 0.17793 8.3318E-05 -0.62755 -0.00029386 -0.44962 -0.00021054 468.26260467299574 45.298 0.13663 45.298 45.17 45.306 0 8 6 2 0 0 0 0.18118 1 24664 24664 19.257 2.1441 1 2504800 16542 979 11331 11539 19695 19695 0.04250669040231969 GLYGLIVAL 9 Unmodified _GLYGLIVAL_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 918.98388671875 1 918.565881 917.558604 1.9648 0.0018048 -2.3376 -0.0021472 -0.37279 -0.00034243 918.5640468721155 100.29 0.10965 100.25 100.18 100.29 -0.036301 7 3 3 0 0 0 0.047696 1 55687 55687 45.75 3.6554 1 17819000 16543 9423 11332 11540 19696 19696 0.09652733942323266 GLYPGLIWL 9 Unmodified _GLYPGLIWL_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.3110961914062 2 516.299853 1030.58515 0.66795 0.00034487 -0.40738 -0.00021033 0.26057 0.00013453 516.2996831102437 101.86 0.22298 95.689 95.574 95.797 -6.1757 23 14 4 0 0 0 0.028712 1 68396 68396 56.048 15.6 1 71643000 16544 3321 11333 11541 19697 19697 0.07108422833653094 GLYRHLSGL 9 Unmodified _GLYRHLSGL_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2880249023438 2 508.287808 1014.56106 NaN NaN NaN NaN NaN NaN NaN 80.21 1 80.21 79.71 80.71 0 0 0 0 0.82015 1 44540 44540 5.2307 0 1 + 16545 19669 11334 11542 19698 19698 0.054365823999773966 GLYSRQLYV 9 Unmodified _GLYSRQLYV_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7996826171875 2 549.800749 1097.58694 0.35412 0.00019469 -0.32156 -0.00017679 0.032559 1.7901E-05 549.8003095321689 48.461 0.29075 48.417 48.3 48.591 -0.04369 21 14 2 0 0 0 0.16019 1 26167 26167 34.932 18.783 1 2521700 16546 4284 11335 11543 19699 19699 0.04205431851596586 GMAANRVP 8 Unmodified _GMAANRVP_ 0 0 0 REV__ENST00000270649.10_1_19:52531684-52531729:-|nuORF REV__ENST00000270649.10_1_19:52531684-52531729:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.212890625 2 408.213255 814.411957 -0.38129 -0.00015565 -1.3181 -0.00053808 -1.6994 -0.00069373 408.2126848125942 53.516 0.36026 53.452 53.157 53.517 -0.063423 29 17 2 0 0 0 0.80232 1 28974 28974 5.2307 0.47466 1 2813000 + 16547 25133 11336 11544 19700 19700 -0.002672664944157077 GMAERIPEL 9 Oxidation (M) _GM(Oxidation (M))AERIPEL_ GM(1)AERIPEL GM(56)AERIPEL 0 0 1 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2628784179688 2 516.263142 1030.51173 -0.12576 -6.4926E-05 -1.2202 -0.00062992 -1.3459 -0.00069485 516.2626770840714 44.59 0.39164 44.59 44.397 44.788 0 62 20 4 0 0 0 0.029718 2 24193 24193;24297 55.503 26.818 1 142740000 16548 3739 11337 11545 19701;19702 19701 651 -0.0023049367111980246 GMAERIPEL 9 Oxidation (M) _GM(Oxidation (M))AERIPEL_ GM(1)AERIPEL GM(56)AERIPEL 0 0 1 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MSMS AL20221201_MKP_PDAC_01 4 516.262939453125 2 516.263142 1030.51173 NaN NaN NaN NaN NaN NaN NaN 49.49 1 44.094 43.594 44.594 -5.3961 0 0 0 0.054801 1 30927 30927 55.503 29.235 1 16549 3739 11337 11545 19703 19703 651 -0.0023049367111980246 GMAERIPEL 9 Unmodified _GMAERIPEL_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2662048339844 2 508.265684 1014.51682 0.14934 7.5902E-05 0.38505 0.00019571 0.53439 0.00027161 508.26601584491954 52.287 0.40988 52.287 52.079 52.489 0 43 17 3 0 0 0 0.021948 2 28879 28879;28996 61.602 35.334 1 3954800 16550 3739 11337 11546 19704;19705 19704 0.010138101915003972 GMAERIPEL 9 Unmodified _GMAERIPEL_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2658081054688 2 508.265684 1014.51682 0.91994 0.00046757 -1.0146 -0.00051568 -0.094643 -4.8104E-05 508.2656460834097 58.279 0.63562 52.205 51.982 52.618 -6.0745 86 34 3 0 0 0 0.01958 2 37419 37292;37419 63.961 37.692 1 122730000 16551 3739 11337 11546 19706;19707 19707 0.010138101915003972 GMAQKTWEL 9 Unmodified _GMAQKTWEL_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521509.5_1_8:67974087-67974366:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2669067382812 2 532.265684 1062.51682 0.7988 0.00042518 0.84192 0.00044813 1.6407 0.0008733 532.2660225770571 53.421 0.34808 47.617 47.467 47.815 -5.8042 41 22 2 0 0 0 0.017075 1 33682 33682 66.457 34.151 1 45935000 16552 3561 11338 11547 19708 19708 -0.011941898085069624 GMEDQGDGYVS 11 Unmodified _GMEDQGDGYVS_ 0 0 0 REV__ENSG00000125879|ENST00000246081|OTOR REV__ENSG00000125879|ENST00000246081|OTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.4857482910156 3 386.485366 1156.43427 0.93604 0.00036177 -0.13283 -5.1336E-05 0.80322 0.00031043 386.4854746045278 46.79 0.8093 41.71 41.604 42.414 -5.0805 168 87 3 0 0 0 0.71341 1 28922 28922 1.2148 0 1 115910000 + 16553 19525 11339 11548 19709 19709 -0.13769176397954652 GMEDQGDGYVS 11 Unmodified _GMEDQGDGYVS_ 0 0 0 REV__ENSG00000125879|ENST00000246081|OTOR REV__ENSG00000125879|ENST00000246081|OTOR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.4860534667969 3 386.485366 1156.43427 0.93604 0.00036177 -0.13283 -5.1336E-05 0.80322 0.00031043 386.4854746045278 46.79 0.8093 41.71 41.604 42.414 -5.0805 168 87 3 0 0 0 0.30496 1 29183 29183 1.2148 0 1 115910000 + 16554 19525 11339 11548 19710 19710 -0.13769176397954652 GMFYDGNHTY 10 Unmodified _GMFYDGNHTY_ 0 0 0 nc|ENSG00000008277|Q9P0K1-2|ADAM22;ENSG00000008277|ENST00000413139|ADAM22;nc|ENSG00000008277|Q9P0K1-4|ADAM22;nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1-5|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7406005859375 2 602.740031 1203.46551 0.55486 0.00033444 0.7272 0.00043831 1.2821 0.00077275 602.7403473200001 61.546 0.60471 55.37 55.088 55.693 -6.1757 92 30 4 0 0 0 0.69385 1 39620 39620 1.4819 0 1 94905000 16555 381 11340 11549 19711 19711 -0.12808558573215123 GMGYFMYREF 10 Unmodified _GMGYFMYREF_ 0 0 0 ENST00000427832.2_1_1:111923053-111923173:+|nuORF ENST00000427832.2_1_1:111923053-111923173:+|nuORF ENST00000427832.2_1_1:111923053-111923173:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.780029296875 2 650.778102 1299.54165 0.55017 0.00035804 2.7565 0.0017939 3.3067 0.0021519 650.7799052255846 64.164 0.28706 63.678 63.492 63.779 -0.48512 21 13 2 0 0 0 0.6966 1 34993 34993 3.2813 0.54611 1 927060 16556 13199 11341 11550 19712 19712 -0.09613877997458076 GMHETVLTV 9 Oxidation (M) _GM(Oxidation (M))HETVLTV_ GM(1)HETVLTV GM(42)HETVLTV 0 0 1 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7506408691406 2 501.749867 1001.48518 0.37153 0.00018642 -0.32989 -0.00016552 0.041642 2.0894E-05 501.75019008342446 37.621 0.25345 37.621 37.51 37.764 0 24 12 3 0 0 0 0.06187 1 20020 20020 42.095 16.695 1 3557900 16557 9939 11342 11551 19713 19713 1604 -0.015501825624596677 GMIQRKMCILF 11 Unmodified _GMIQRKMCILF_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.3570556640625 2 670.355996 1338.69744 0.8375 0.00056142 1.0131 0.00067915 1.8506 0.0012406 670.356718686973 58.616 0.19292 58.556 58.486 58.679 -0.060722 19 9 3 0 0 0 0.71036 1 31987 31987 3.2813 0 1 1968900 16558 8543 11343 11552 19714 19714 0.041638692523292775 GMKKSGGG 8 Unmodified _GMKKSGGG_ 0 0 0 ENSG00000167378|ENST00000422989|IRGQ ENSG00000167378|ENST00000422989|IRGQ ENSG00000167378|ENST00000422989|IRGQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1874694824219 2 361.186706 720.358859 1.4203 0.00051299 0.356 0.00012858 1.7763 0.00064157 361.1867595452334 45.675 0.35403 40.72 40.582 40.936 -4.9549 29 23 2 0 0 0 0.80992 1 28080 28080 0.69038 0 1 7105500 16559 7604 11344 11553 19715 19715 -0.012506442770586546 GMLDTHHKL 9 Unmodified _GMLDTHHKL_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5;ENST00000559923.1_1_14:103803111-103803587:+|nuORF ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1830139160156 3 351.183293 1050.52805 1.2314 0.00043243 -0.25082 -8.8082E-05 0.98054 0.00034435 351.1828368029099 26.96 0.16957 23.923 23.816 23.985 -3.0365 11 8 2 0 0 0 0.094149 1 14923 14923 32.037 14.595 1 8602800 16560 1863 11345 11554 19716 19716 0.004806322856211409 GMLEITLISNF 11 Unmodified _GMLEITLISNF_ 0 0 0 ENST00000512145.1_1_6:18237336-18256602:-|nuORF ENST00000512145.1_1_6:18237336-18256602:-|nuORF ENST00000512145.1_1_6:18237336-18256602:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.32958984375 2 619.328482 1236.64241 NaN NaN NaN NaN NaN NaN NaN 41.105 1 41.105 40.605 41.605 0 0 0 0 0.79635 1 22142 22142 12.241 0 1 16561 14620 11346 11555 19717 19717 0.03355477257059647 GMLGLGLF 8 Unmodified _GMLGLGLF_ 0 0 0 REV__nc|ENSG00000140632|Q49A26-5|GLYR1 REV__nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.4437866210938 1 807.443323 806.436046 1.1008 0.00088887 0.64826 0.00052343 1.7491 0.0014123 807.4433968151291 101.62 0.10825 95.44 95.395 95.503 -6.1757 8 5 2 0 0 0 0.5245 1 68207 68207 32.454 8.2437 1 12490000 + 16562 20488 11347 11556 19718 19718 0.025085739392579853 GMLRAAVILL 10 Unmodified _GMLRAAVILL_ 0 0 0 ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8789672851562 3 352.89145 1055.65252 0.30487 0.00010759 0.45526 0.00016066 0.76013 0.00026824 352.89148604537854 45.944 0.19883 45.916 45.844 46.043 -0.028011 12 8 2 0 0 0 0.23767 1 24736 24736 6.1918 1.2948 1 791180 16563 10871 11348 11557 19719 19719 0.12692129772972294 GMLVPWVDFF 10 Unmodified _GMLVPWVDFF_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A REV__ENSG00000132915|ENST00000255266|PDE6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2039489746094 3 404.203694 1209.58925 -0.72728 -0.00029397 0.75857 0.00030662 0.03129 1.2647E-05 404.20413833491506 27.465 0.22481 27.465 27.392 27.617 0 15 10 2 0 0 0 0.69064 1 14201 14201 3.8763 0.28927 1 2486800 + 16564 19891 11349 11558 19720 19720 -0.007158557349612238 GMMKELHKV 9 Unmodified _GMMKELHKV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1940612792969 3 358.192912 1071.55691 0.92898 0.00033275 -0.663 -0.00023748 0.26598 9.5272E-05 358.1929816313143 24.224 0.45653 21.397 21.178 21.634 -2.8273 87 25 5 0 0 0 0.094149 2 13110 13110;13225 26.021 20.237 1 78427000 16565 5077 11350 11559 19721;19722 19721 0.023990335904045423 GMMKELHKV 9 Unmodified _GMMKELHKV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7863159179688 2 536.78573 1071.55691 0.15616 8.3824E-05 0.38752 0.00020802 0.54368 0.00029184 536.7860681669237 24.218 0.28025 21.391 21.265 21.545 -2.8273 21 15 2 0 0 0 0.012228 1 13149 13149 74.2 50.179 1 5117400 16566 5077 11350 11559 19723 19723 0.023990335904045423 GMPAETTIAI 10 Unmodified _GMPAETTIAI_ 0 0 0 nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD nc|ENSG00000153086|Q8TDX5-2|ACMSD nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7430419921875 2 502.260068 1002.50558 0.83544 0.00041961 0.97853 0.00049148 1.814 0.00091109 502.2616208905749 60.159 0.25394 60.159 60.068 60.322 0 25 10 3 0 0 0 0.23634 1 33543 33543 6.7232 1.9672 1 1104500 16567 6236 11351 11560 19724 19724 0.00442988097347552 GMRGYWQFVS 10 Unmodified _GMRGYWQFVS_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7897338867188 2 615.789858 1229.56516 NaN NaN NaN NaN NaN NaN NaN 87.863 1 87.863 87.363 88.363 0 0 0 0 1.0024 1 48644 48644 0.40072 0 1 + 16568 19178 11352 11561 19725 19725 -0.04043696168605493 GMSEKAIEKF 10 Oxidation (M) _GM(Oxidation (M))SEKAIEKF_ GM(1)SEKAIEKF GM(42)SEKAIEKF 0 0 1 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2882690429688 2 578.289356 1154.56416 0.26874 0.00015541 -1.7897 -0.001035 -1.521 -0.00087955 578.2879925956508 64.202 0.34306 64.202 64.022 64.365 0 29 14 3 0 0 0 0.13297 1 35829 35829 41.956 10.687 1 1997800 16569 10118 11353 11562 19726 19726 1642 -0.006939553281881672 GMSVPGTEQF 10 Unmodified _GMSVPGTEQF_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2424926757812 2 526.739499 1051.46445 1.4613 0.00076971 -0.56869 -0.00029955 0.89259 0.00047016 526.7394079253679 33.888 0.52339 29.903 29.643 30.167 -3.9853 91 28 4 0 0 0 0.44373 1 19373 19373 19.257 4.4187 1 79695000 + 16570 24583 11354 11563 19727 19727 -0.059227729421081676 GMVPQGLSL 9 Unmodified _GMVPQGLSL_ 0 0 0 REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2424926757812 2 451.244221 900.473888 NaN NaN NaN NaN NaN NaN NaN 66.243 1 65.759 65.259 66.259 -0.48323 0 0 0 0.33856 1 36168 36168 23.148 1.4018 1 + 16571 24647 11355 11564 19728 19728 0.01967040134081799 GMYIFLHTV 9 Oxidation (M) _GM(Oxidation (M))YIFLHTV_ GM(1)YIFLHTV GM(67)YIFLHTV 0 0 1 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7788696289062 2 548.778428 1095.5423 0.29099 0.00015969 0.042026 2.3063E-05 0.33301 0.00018275 548.7786128801044 61.84 0.33767 61.807 61.608 61.946 -0.032787 49 16 4 0 0 0 0.016184 1 33722 33722 67.344 56.229 1 23553000 16572 8178 11356 11565 19729 19729 1387 -0.0016471528608690278 GMYIFLHTV 9 Unmodified _GMYIFLHTV_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7815551757812 2 540.78097 1079.54739 0.75445 0.00040799 -1.4071 -0.00076093 -0.65265 -0.00035294 540.7804828294932 92.426 0.87893 86.25 85.666 86.545 -6.1757 95 52 3 0 0 0 0.014417 3 61144 61016;61144;61272 89.427 47.332 1 30258000 16573 8178 11356 11566 19730;19731;19732 19731 0.010795885765219282 GNAKKKPIQEY 11 Unmodified _GNAKKKPIQEY_ 0 0 0 REV__ENSG00000152104|ENST00000366956|PTPN14 REV__ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.9066772460938 3 425.906705 1274.69829 -0.10983 -4.6779E-05 0.89049 0.00037927 0.78066 0.00033249 425.90701558710674 30.896 0.53321 30.926 30.69 31.223 0.030104 50 22 4 0 0 0 0.6889 1 16132 16132 7.0371 5.2948 1 4153800 + 16574 21103 11357 11567 19733 19733 0.07192446488920723 GNFDSLDAATY 11 Unmodified _GNFDSLDAATY_ 0 0 0 REV__ENSG00000187017|ENST00000645284|ESPN REV__ENSG00000187017|ENST00000645284|ESPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2578125 2 587.256568 1172.49858 -0.48003 -0.0002819 -0.41682 -0.00024478 -0.89685 -0.00052668 587.256328188249 26.184 0.44094 26.184 26.047 26.488 0 67 23 4 0 0 0 0.39949 1 13418 13418 21.537 3.3906 1 20656000 + 16575 23613 11358 11568 19734 19734 -0.08076653249509036 GNFLVNLWLPL 11 Unmodified _GNFLVNLWLPL_ 0 0 0 REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF REV__ENST00000308191.10_1_6:136173036-136173156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3670654296875 2 643.368798 1284.72304 0.43122 0.00027743 2.7313 0.0017572 3.1625 0.0020346 643.8735201660687 78.26 0.2634 78.312 78.156 78.419 0.052452 21 10 3 0 0 0 0.5229 1 43212 43212 15.248 4.4246 1 1705600 + 16576 25396 11359 11569 19735 19735 0.0920712636227563 GNFYDFLTGDF 11 Unmodified _GNFYDFLTGDF_ 0 0 0 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.2830200195312 2 648.282586 1294.55062 0.34283 0.00022225 -0.4856 -0.0003148 -0.14277 -9.2555E-05 648.2823878937347 89.76 0.46109 89.258 89.05 89.512 -0.50171 54 22 3 0 0 0 0.68427 1 49022 49022 5.7319 1.7875 1 3499000 + 16577 17522 11360 11570 19736 19736 -0.0848748983578389 GNGADSMERCF 11 Unmodified _GNGADSMERCF_ 0 0 0 ENST00000439875.1_1_9:115871640-115872087:-|nuORF ENST00000439875.1_1_9:115871640-115872087:-|nuORF ENST00000439875.1_1_9:115871640-115872087:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7344360351562 2 593.734422 1185.45429 0.094806 5.629E-05 -0.054279 -3.2227E-05 0.040527 2.4062E-05 593.7344133596691 63.421 0.44102 63.421 63.244 63.685 0 74 22 5 0 0 0 0.68427 1 35443 35443 5.7319 0.97584 1 17819000 16578 13382 11361 11571 19737 19737 -0.13101703938991704 GNGADSMERCF 11 Unmodified _GNGADSMERCF_ 0 0 0 ENST00000439875.1_1_9:115871640-115872087:-|nuORF ENST00000439875.1_1_9:115871640-115872087:-|nuORF ENST00000439875.1_1_9:115871640-115872087:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.733642578125 2 593.734422 1185.45429 0.55696 0.00033069 -0.85643 -0.00050849 -0.29947 -0.00017781 593.7340108538875 63.901 0.35785 63.416 63.234 63.592 -0.48512 67 19 4 0 0 0 0.71341 1 34935 34935 2.9952 0.69251 1 19437000 16579 13382 11361 11571 19738 19738 -0.13101703938991704 GNGTALVF 8 Unmodified _GNGTALVF_ 0 0 0 REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF REV__ENST00000527981.1_1_14:59950407-59951094:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.7090454101562 2 389.708328 777.402104 1.5213 0.00059288 0.64176 0.0002501 2.1631 0.00084298 389.708167969711 54.353 0.4667 48.488 48.19 48.656 -5.8653 45 27 2 0 0 0 0.57045 2 34373 34373;34534 28.487 0 1 23845000 + 16580 28405 11362 11572 19739;19740 19739 0.004498687718523797 GNIWRFPYLCQ 11 Unmodified _GNIWRFPYLCQ_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3146362304688 2 698.845165 1395.67578 0.51019 0.00035654 2.4465 0.0017097 2.9566 0.0020662 698.8461502999219 47.655 0.10676 47.655 47.601 47.707 0 6 4 2 0 0 0 0.29817 1 26122 26122 8.1555 2.4237 1 1123200 16581 9908;7188 11363 11573 19741 19741 -0.006234761803625588 GNIWRFPYLCQ 11 Unmodified _GNIWRFPYLCQ_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.84814453125 2 698.845165 1395.67578 0.57621 0.00040268 1.9435 0.0013582 2.5197 0.0017609 698.8462631210084 47.398 0.20646 47.045 46.919 47.125 -0.3526 23 9 3 0 0 0 0.50515 1 25387 25387 16.149 7.9936 1 10751000 16582 9908;7188 11363 11573 19742 19742 -0.006234761803625588 GNIWRFPYLCQ 11 Unmodified _GNIWRFPYLCQ_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.8468627929688 2 698.845165 1395.67578 0.47698 0.00033334 -0.025967 -1.8147E-05 0.45102 0.00031519 698.8457970388804 48.026 0.19559 47.673 47.535 47.73 -0.3526 14 9 2 0 0 0 0.59689 1 25751 25751 11.495 5.7629 1 2359000 16583 9908;7188 11363 11573 19743 19743 -0.006234761803625588 GNIWRFPYLCQ 11 Unmodified _GNIWRFPYLCQ_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.8457641601562 2 698.845165 1395.67578 NaN NaN NaN NaN NaN NaN NaN 47.128 1 47.095 46.595 47.595 -0.033417 0 0 0 0.88164 1 25382 25382 8.1555 0.54658 1 16584 9908;7188 11363 11573 19744 19744 -0.006234761803625588 GNIWRFPYLCQ 11 Unmodified _GNIWRFPYLCQ_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17;ENSG00000164363|ENST00000324642|SLC6A18 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 698.845165 1395.67578 -0.11231 -7.8487E-05 2.3578 0.0016477 2.2455 0.0015692 698.8467653152594 46.963 0.13991 46.963 46.922 47.062 0 -0.041036 0.00047249 NaN 16.149 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2613400 16585 9908;7188 11363 11573 -0.006234761803625588 GNKFYYLL 8 Unmodified _GNKFYYLL_ 0 0 0 ENST00000465215.1_1_3:101713409-101713700:+|nuORF ENST00000465215.1_1_3:101713409-101713700:+|nuORF ENST00000465215.1_1_3:101713409-101713700:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2672729492188 2 509.273835 1016.53312 NaN NaN NaN NaN NaN NaN NaN 103.44 1 103.34 102.84 103.84 -0.10458 0 0 0 0.97444 1 56422 56422 0.79363 0.10326 1 16586 13732 11364 11574 19745 19745 0.025512594198971783 GNKLVMLF 8 Unmodified _GNKLVMLF_ 0 0 0 nc|ENSG00000136160|P24530-2|EDNRB nc|ENSG00000136160|P24530-2|EDNRB nc|ENSG00000136160|P24530-2|EDNRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.265625 2 461.264956 920.515359 1.7622 0.00081283 0.018148 8.371E-06 1.7803 0.00082121 461.264841164483 82.051 0.41484 82.113 81.932 82.347 0.062004 39 16 3 0 0 0 0.80624 1 45452 45452 2.8892 0.31174 1 21946000 16587 16211 11365 11575 19746 19746 0.051922208933888214 GNKNSQLGMT 10 Unmodified _GNKNSQLGMT_ 0 0 0 REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 REV__nc|ENSG00000026751|Q9NQ25-7|SLAMF7 MSMS AL20221201_MKP_PDAC_01 4 525.2550659179688 2 525.255848 1048.49714 NaN NaN NaN NaN NaN NaN NaN 27.963 1 24.814 24.314 25.314 -3.1482 0 0 0 0.92825 1 15542 15542 6.7232 0.96273 1 + 16588 17130 11366 11576 19747 19747 -0.0251656581926909 GNKWAYRTDGF 11 Unmodified _GNKWAYRTDGF_ 0 0 0 REV__ENSG00000165156|ENST00000395571|ZHX1 REV__ENSG00000165156|ENST00000395571|ZHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8800659179688 3 438.879038 1313.61528 0.3646 0.00016002 0.76229 0.00033455 1.1269 0.00049457 438.8795153590427 20.64 0.30741 20.65 20.451 20.759 0.010553 29 13 4 0 0 0 0.72952 1 10485 10485 0.50596 0 1 1085300 + 16589 21987 11367 11577 19748 19748 -0.02897870239121403 GNLDMDLTY 9 Unmodified _GNLDMDLTY_ 0 0 0 REV__ENST00000382291.7_1_20:335024-335117:+|nuORF REV__ENST00000382291.7_1_20:335024-335117:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 521.2320556640625 2 521.231507 1040.44846 NaN NaN NaN NaN NaN NaN NaN 38.959 1 34.508 34.008 35.008 -4.4509 0 0 0 0.43483 1 23054 23054 18.146 2.2992 1 + 16590 26345 11368 11578 19749 19749 -0.07014479179019872 GNLSLFEQFN 10 Unmodified _GNLSLFEQFN_ 0 0 0 REV__nc|ENSG00000120868|O14727-3|APAF1 REV__nc|ENSG00000120868|O14727-3|APAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7842407226562 2 584.785296 1167.55604 1.04 0.0006082 -0.12498 -7.3085E-05 0.91506 0.00053511 584.7851108943327 71.787 0.53329 65.611 65.345 65.878 -6.1757 98 29 4 0 0 0 0.54684 1 46825 46825 13.906 13.906 1 911550000 + 16591 19266 11369 11579 19750 19750 -0.021037662532762624 GNNRGVHDK 9 Unmodified _GNNRGVHDK_ 0 0 0 REV__ENSG00000244462|ENST00000374114|RBM12 REV__ENSG00000244462|ENST00000374114|RBM12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7513122558594 2 498.752121 995.48969 NaN NaN NaN NaN NaN NaN NaN 89.922 1 89.922 89.422 90.422 0 0 0 0 0.83329 1 49751 49751 3.5965 0.70727 1 + 16592 24483 11370 11580 19751 19751 -0.008235373046659333 GNPCASFDHY 10 Unmodified _GNPCASFDHY_ 0 0 0 ENSG00000129295|ENST00000620350|DNAAF11;nc|ENSG00000129295|Q86X45-2|DNAAF11;ENST00000520446.5_1_8:133637625-133687739:-|nuORF ENSG00000129295|ENST00000620350|DNAAF11 ENSG00000129295|ENST00000620350|DNAAF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7194213867188 2 555.719098 1109.42364 0.52288 0.00029058 0.20964 0.0001165 0.73252 0.00040708 555.7193097352632 56.816 0.36494 56.816 56.609 56.974 0 27 15 2 0 0 0 0.54684 1 31644 31644 13.906 1.3745 1 2774600 16593 4128 11371 11581 19752 19752 -0.12669114261734649 GNPPDCDS 8 Unmodified _GNPPDCDS_ 0 0 0 nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B nc|ENSG00000154529|Q96NU0-2|CNTNAP3B nc|ENSG00000154529|Q96NU0-2|CNTNAP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.281005859375 1 804.282859 803.275583 -0.0034388 -2.7657E-06 -1.049 -0.00084367 -1.0524 -0.00084644 804.280915731986 102.39 0.27749 102.39 102.29 102.57 0 36 13 3 0 0 0 0.80992 1 56454 56454 0.69038 0.088878 1 17440000 16594 6332 11372 11582 19753 19753 -0.13392425515598916 GNPPDCDS 8 Unmodified _GNPPDCDS_ 0 0 0 nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B nc|ENSG00000154529|Q96NU0-2|CNTNAP3B nc|ENSG00000154529|Q96NU0-2|CNTNAP3B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 804.282859 803.275583 -0.058323 -4.6908E-05 -1.6182 -0.0013015 -1.6765 -0.0013484 804.2807202333844 102.47 0.11091 102.35 102.28 102.39 -0.11613 -0.018363 -0.00030058 NaN 0.69038 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1113600 16595 6332 11372 11582 -0.13392425515598916 GNQPSTASDL 10 Unmodified _GNQPSTASDL_ 0 0 0 REV__ENSG00000161021|ENST00000292599|MAML1 REV__ENSG00000161021|ENST00000292599|MAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.22900390625 2 495.230353 988.446153 -0.43889 -0.00021735 -0.84252 -0.00041724 -1.2814 -0.0006346 495.2296800438539 77.374 0.56524 76.891 76.624 77.189 -0.4826 56 26 3 0 0 0 0.6966 1 42379 42379 3.2813 3.2813 1 8150200 + 16596 21580 11373 11583 19754 19754 -0.04853191592474104 GNQPSTASDL 10 Unmodified _GNQPSTASDL_ 0 0 0 REV__ENSG00000161021|ENST00000292599|MAML1 REV__ENSG00000161021|ENST00000292599|MAML1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 495.230353 988.446153 0.31089 0.00015396 -0.59268 -0.00029352 -0.2818 -0.00013955 495.2299811825617 76.821 0.28687 76.872 76.698 76.985 0.05011 -0.0097996 0.00020622 NaN 3.2813 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1213100 + 16597 21580 11373 11583 -0.04853191592474104 GNRAALHL 8 Unmodified _GNRAALHL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1;REV__ENSG00000064999|ENST00000360359|ANKS1A;REV__ENSG00000183421|ENST00000332512|RIPK4 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2465209960938 2 426.245944 850.477334 0.30971 0.00013201 0.9882 0.00042122 1.2979 0.00055323 426.2462509277873 74.602 0.48798 74.648 74.366 74.854 0.045959 37 21 2 0 0 0 0.80975 2 41067 41067;41164 0.79363 0 1 8824900 + 16598 17748;17367;23345 11374 11584 19755;19756 19755 0.046114710229517186 GNRAECSYEG 10 Unmodified _GNRAECSYEG_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MSMS AL20221201_MKP_PDAC_01 4 362.4845581054688 3 362.482067 1084.42437 NaN NaN NaN NaN NaN NaN NaN 50.148 1 44.609 44.109 45.109 -5.5391 0 0 0 0.97592 1 31417 31417 1.5923 0 1 + 16599 21441 11375 11585 19757 19757 -0.1144631961271898 GNRHQELYS 9 Unmodified _GNRHQELYS_ 0 0 0 nc|ENSG00000129933|Q9Y6X3-2|MAU2 nc|ENSG00000129933|Q9Y6X3-2|MAU2 nc|ENSG00000129933|Q9Y6X3-2|MAU2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.51220703125 3 368.512467 1102.51557 NaN NaN NaN NaN NaN NaN NaN 17.233 1 17.233 16.733 17.733 0 0 0 0 0.85798 1 8474 8474 0.23584 0 1 16600 16184 11376 11586 19758 19758 -0.03158687853056108 GNRLRAELGR 10 Unmodified _GNRLRAELGR_ 0 0 0 ENSG00000176155|ENST00000694881|CCDC57 ENSG00000176155|ENST00000694881|CCDC57 ENSG00000176155|ENST00000694881|CCDC57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3323364257812 2 571.33107 1140.64759 2.0404 0.0011657 0.042755 2.4427E-05 2.0831 0.0011902 571.3308837746471 94.867 0.4481 94.881 94.643 95.091 0.014244 39 16 3 0 0 0 0.71276 1 52781 52781 1.4819 0 1 5168600 16601 8570 11377 11587 19759 19759 0.08288961954553997 GNRVKLLIG 9 Unmodified _GNRVKLLIG_ 0 0 0 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3138732910156 2 485.313826 968.613099 -0.43854 -0.00021283 0.71587 0.00034742 0.27733 0.00013459 485.31400157510143 102.62 0.53168 102.57 102.4 102.93 -0.046684 29 18 2 0 0 0 0.62242 1 57076 57076 0 0 1 2896600 16602 2837 11378 11588 19760 19760 0.1275374581377946 GNSCANPFLYT 11 Unmodified _GNSCANPFLYT_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1778564453125 3 396.178096 1185.51246 -0.35908 -0.00014226 1.3158 0.00052131 0.95677 0.00037905 396.17873058944525 23.191 0.38638 23.191 22.921 23.307 0 47 19 3 0 0 0 0.71341 1 11724 11724 1.2148 0 1 1299700 16603 8971 11379 11589 19761 19761 -0.07287699022072047 GNSKKGLK 8 Unmodified _GNSKKGLK_ 0 0 0 nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;ENST00000479369.6_1_1:144863291-144863441:-|nuORF;ENST00000420737.1_1:146011237-146016889:+|nuORF nc|ENSG00000178104|Q5VU43-3|PDE4DIP nc|ENSG00000178104|Q5VU43-3|PDE4DIP MSMS AL20221201_MKP_PDAC_01 4 416.2572631835938 2 416.255977 830.497401 NaN NaN NaN NaN NaN NaN NaN 109.24 1 103.06 102.56 103.56 -6.1757 0 0 0 0.97444 1 72965 72965 0.79363 0 1 16604 8731 11380 11590 19762 19762 0.07537221962911644 GNTDCERFNM 10 Unmodified _GNTDCERFNM_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1596069335938 3 396.158707 1185.45429 0.05026 1.9911E-05 0.71049 0.00028147 0.76075 0.00030138 396.15920817851446 63.41 0.46617 63.41 63.219 63.685 0 95 23 6 0 0 0 0.63399 1 35331 35331 5.4027 0 1 14048000 + + 16605 16863 11381 11591 19763 19763 -0.13101703938991704 GNTEPVKAKEE 11 Unmodified _GNTEPVKAKEE_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.3062744140625 2 601.306592 1200.59863 -0.8814 -0.00052999 -0.40817 -0.00024543 -1.2896 -0.00077542 601.3063748007448 28.039 0.38574 28.039 27.845 28.231 0 70 22 4 0 0 0 0.22582 1 14410 14410 30.703 0.86286 1 37624000 16606 7662 11382 11592 19764 19764 0.006355840842843463 GNTMHTVFH 9 Unmodified _GNTMHTVFH_ 0 0 0 ENSG00000278311|ENST00000613102|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 MSMS AL20221201_MKP_PDAC_01 4 522.2415161132812 2 522.240001 1042.46545 NaN NaN NaN NaN NaN NaN NaN 46.61 1 41.529 41.029 42.029 -5.0805 0 0 0 0.25233 1 28832 28832 27.629 8.3718 1 16607 10933 11383 11593 19765 19765 -0.05408513782549562 GNTYPRFNEP 10 Unmodified _GNTYPRFNEP_ 0 0 0 REV__nc|ENSG00000103995|O94986-2|CEP152 REV__nc|ENSG00000103995|O94986-2|CEP152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7846069335938 2 597.780544 1193.54654 0.26769 0.00016002 0.1193 7.1317E-05 0.38699 0.00023134 597.7805506537794 36.907 0.36455 36.907 36.732 37.097 0 38 17 3 0 0 0 0.65282 1 19570 19570 8.1555 0.8663 1 2624200 + 16608 18331 11384 11594 19766 19766 -0.04249534538826083 GNVKIREQLF 10 Unmodified _GNVKIREQLF_ 0 0 0 REV__ENST00000469811.1_1_14:77352823-77353039:-|nuORF REV__ENST00000469811.1_1_14:77352823-77353039:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.9014282226562 3 401.899662 1202.67716 0.2691 0.00010815 3.2711 0.0013147 3.5402 0.0014228 401.9010711261969 47.939 0.28313 47.9 47.764 48.047 -0.038643 26 13 3 0 0 0 0.56348 1 25855 25855 7.9454 0 1 3264000 + 16609 19032 11385 11595 19767 19767 0.08392481180044342 GPAAAPVPWH 10 Unmodified _GPAAAPVPWH_ 0 0 0 REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF REV__ENST00000465878.6_2_16:57792547-57792799:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.2396850585938 2 501.761426 1001.5083 0.73512 0.00036886 -0.98675 -0.00049511 -0.25163 -0.00012626 501.7609006586786 35.482 0.38021 31.29 31.094 31.474 -4.1928 31 23 2 0 0 0 0.22993 1 20581 20581 12.532 3.9383 1 3654600 + 16610 27399 11386 11596 19768 19768 0.007606243371697019 GPAAEDVFS 9 Unmodified _GPAAEDVFS_ 0 0 0 ENST00000264042.7_1_2:242422896-242429387:+|nuORF ENST00000264042.7_1_2:242422896-242429387:+|nuORF ENST00000264042.7_1_2:242422896-242429387:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 893.4095458984375 1 892.404689 891.397412 0.0080419 7.1766E-06 0.28096 0.00025073 0.28901 0.00025791 892.4048409187418 37.354 0.22015 37.354 37.238 37.458 0 19 11 2 0 0 0 0.48152 1 19822 19822 8.5933 0 1 3039200 16611 11303 11387 11597 19769 19769 -0.05263060161564681 GPAAGKGFP 9 Unmodified _GPAAGKGFP_ 0 0 0 REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2166442871094 2 401.216321 800.418088 -0.021056 -8.448E-06 -0.073548 -2.9509E-05 -0.094604 -3.7957E-05 401.2162299420794 60.493 0.40277 60.004 59.847 60.249 -0.48932 46 19 3 0 0 0 0.087258 2 32888 32888;32986 36.044 3.9272 1 14536000 + 16612 26528 11388 11598 19770;19771 19770 0.009895750087594024 GPAAGKGFP 9 Unmodified _GPAAGKGFP_ 0 0 0 REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2164611816406 2 401.216321 800.418088 0.84898 0.00034063 -0.18696 -7.5011E-05 0.66203 0.00026562 401.2161890468973 65.969 0.76936 59.793 59.51 60.28 -6.1757 89 44 3 0 0 0 0.087258 3 43141 42721;42853;43141 36.044 3.9272 1 70240000 + 16613 26528 11388 11598 19772;19773;19774 19774 0.009895750087594024 GPAAGKGFP 9 Unmodified _GPAAGKGFP_ 0 0 0 REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 401.216321 800.418088 -0.021056 -8.448E-06 -0.073548 -2.9509E-05 -0.094604 -3.7957E-05 401.2162299420794 60.493 0.40277 60.004 59.847 60.249 -0.48932 0.073801 -4.2434E-05 NaN 36.044 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 14536000 + 16614 26528 11388 11598 0.009895750087594024 GPAAGKGFP 9 Unmodified _GPAAGKGFP_ 0 0 0 REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 401.216321 800.418088 0.84898 0.00034063 -0.18696 -7.5011E-05 0.66203 0.00026562 401.2161890468973 65.969 0.76936 59.793 59.51 60.28 -6.1757 -0.13687 -0.00013344 NaN 36.044 89 44 3 NaN NaN NaN NaN 0 NaN NaN 0 70240000 + 16615 26528 11388 11598 0.009895750087594024 GPAAGRRHTQ 10 Unmodified _GPAAGRRHTQ_ 0 0 0 REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF REV__ENST00000402357.5_1_22:49145671-49146484:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2456665039062 2 525.781213 1049.54787 0.40876 0.00021492 0.88273 0.00046413 1.2915 0.00067904 525.7816441440494 37.484 0.52876 37.484 37.277 37.806 0 106 27 6 0 0 0 0.22941 1 20095 20095 5.7319 0 1 1843199999.9999998 + 16616 26612 11389 11599 19775 19775 0.025081443405952086 GPAALRLSAL 10 Unmodified _GPAALRLSAL_ 0 0 0 ENST00000353332.9_1_3:9691400-9695362:+|nuORF ENST00000353332.9_1_3:9691400-9695362:+|nuORF ENST00000353332.9_1_3:9691400-9695362:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.8002014160156 2 484.798009 967.581465 0.95241 0.00046173 0.66393 0.00032187 1.6163 0.0007836 484.79825988906197 57.79 0.29873 57.724 57.554 57.852 -0.066032 20 14 2 0 0 0 0.024351 1 31459 31459 71.708 27.936 1 1987300 16617 12052 11390 11600 19776 19776 0.09637753059791976 GPACKRPAL 9 Carbamidomethyl (C) _GPAC(Carbamidomethyl (C))KRPAL_ GPAC(1)KRPAL GPAC(64)KRPAL 0 1 0 nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MSMS AL20221201_MKP_PDAC_01 4 485.2686157226562 2 485.268561 968.52257 NaN NaN NaN NaN NaN NaN NaN 19.155 1 16.498 15.998 16.998 -2.6564 0 0 0 0.035065 1 10125 10125 64.236 37.353 1 16618 5645 11391 11601 19777 19777 574 0.03704953493809171 GPAGPILSL 9 Unmodified _GPAGPILSL_ 0 0 0 ENSG00000155438|ENST00000285814|NIFK;ENST00000477693.1_1_2:122488402-122494426:-|nuORF ENSG00000155438|ENST00000285814|NIFK ENSG00000155438|ENST00000285814|NIFK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.48779296875 1 824.48763 823.480354 0.23783 0.00019609 1.1676 0.00096265 1.4054 0.0011587 824.4885673853835 73.069 0.24378 72.594 72.473 72.717 -0.47588 17 10 2 0 0 0 0.03327 1 39987 39987 53.576 13.127 1 1046100 16619 6388 11392 11602 19778 19778 0.06155301357091503 GPAGPMGF 8 Unmodified _GPAGPMGF_ 0 0 0 REV__ENSG00000144810|ENST00000652472|COL8A1 REV__ENSG00000144810|ENST00000652472|COL8A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1703491210938 2 367.170524 732.326496 -0.029333 -1.077E-05 -1.4662 -0.00053835 -1.4955 -0.00054912 367.17007497030323 38.067 0.31642 38.084 37.922 38.239 0.01704 22 14 2 0 0 0 0.80624 1 20248 20248 2.8892 0 1 1423600 + 16620 20736 11393 11603 19779 19779 -0.05037431680068494 GPALAARKIAY 11 Unmodified _GPALAARKIAY_ 0 0 0 REV__nc|ENSG00000165521|Q05BV3|EML5 REV__nc|ENSG00000165521|Q05BV3|EML5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.836181640625 2 565.837665 1129.66078 NaN NaN NaN NaN NaN NaN NaN 46.428 1 46.091 45.591 46.591 -0.33664 0 0 0 0.84159 1 24849 24849 10.074 0 1 + 16621 22017 11394 11604 19780 19780 0.10113400013915452 GPALLGVF 8 Unmodified _GPALLGVF_ 0 0 0 ENSG00000063854|ENST00000397356|HAGH;ENST00000565097.1_1_16:1872299-1876830:-|nuORF;ENST00000569700.5_1_16:1869077-1876788:-|nuORF;nc|ENSG00000063854|Q16775-3|HAGH ENSG00000063854|ENST00000397356|HAGH ENSG00000063854|ENST00000397356|HAGH MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2324523925781 2 387.231439 772.448326 0.85394 0.00033067 0.031813 1.2319E-05 0.88576 0.00034299 387.23140223667014 66.632 0.3981 60.456 60.23 60.628 -6.1757 38 22 2 0 0 0 0.70131 1 43260 43260 17.087 0 1 22602000 16622 866 11395 11605 19781 19781 0.05299933673950363 GPALMSGAVL 10 Unmodified _GPALMSGAVL_ 0 0 0 REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2530212402344 2 458.252046 914.489538 0.69669 0.00031926 0.52819 0.00024204 1.2249 0.0005613 458.25231224354764 68.124 0.46957 61.948 61.769 62.239 -6.1757 38 27 2 0 0 0 0.045724 1 44438 44438 60.39 9.5345 1 18798000 + 16623 20152 11396 11606 19782 19782 0.028873266511141082 GPAPHLAQP 9 Unmodified _GPAPHLAQP_ 0 0 0 REV__ENST00000571697.5_1_17:7216077-7216449:-|nuORF REV__ENST00000571697.5_1_17:7216077-7216449:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2406311035156 2 444.240327 886.466101 NaN NaN NaN NaN NaN NaN NaN 58.037 1 57.971 57.471 58.471 -0.066036 0 0 0 0.82015 1 31601 31601 5.2307 0.90143 1 + 16624 19860 11397 11607 19783 19783 0.018326489287915138 GPAQKGAK 8 Unmodified _GPAQKGAK_ 0 0 0 ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1;ENST00000459895.1_1_21:46913462-46917625:+|nuORF ENSG00000182871|ENST00000651438|COL18A1 ENSG00000182871|ENST00000651438|COL18A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.7213745117188 2 378.72177 755.428987 -0.62118 -0.00023526 0.2366 8.9607E-05 -0.38458 -0.00014565 378.7218508326752 15.947 0.16854 15.947 15.87 16.039 0 71 40 2 0 0 0 0.80143 1 7702 7702 5.7604 0.52976 1 1171500 16625 9096 11398 11608 19784 19784 0.04148977383044894 GPAQRPSSHL 10 Unmodified _GPAQRPSSHL_ 0 0 0 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 MSMS AL20221201_MKP_PDAC_01 4 350.5220031738281 3 350.521074 1048.54139 NaN NaN NaN NaN NaN NaN NaN 17.302 1 14.715 14.215 15.215 -2.5866 0 0 0 0.79473 1 9035 9035 7.1017 0 1 + 16626 22753 11399 11609 19785 19785 0.019062063892533843 GPARFQLQY 9 Unmodified _GPARFQLQY_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2857666015625 2 540.285266 1078.55598 0.44703 0.00024152 0.31678 0.00017115 0.76381 0.00041267 540.2853555639232 48.003 0.2748 47.965 47.827 48.102 -0.038647 30 13 3 0 0 0 0.012148 1 25852 25852 74.423 43.786 1 11556000 16627 4951;8967 11400 11610 19786 19786 0.019842785373839433 GPARFQLQY 9 Unmodified _GPARFQLQY_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2840576171875 2 540.285266 1078.55598 0.48986 0.00026467 0.20147 0.00010885 0.69133 0.00037352 540.2854736328392 53.335 0.34069 47.531 47.318 47.659 -5.8042 45 21 3 0 0 0 0.0082281 2 33762 33629;33762 104.8 65.938 1 42192000 16628 4951;8967 11400 11610 19787;19788 19788 0.019842785373839433 GPASITPRP 9 Unmodified _GPASITPRP_ 0 0 0 ENST00000341690.10_1_16:84218491-84220645:-|nuORF;ENST00000564345.5_3_16:84218557-84220645:-|nuORF;ENST00000565544.1_1_16:84219097-84220645:-|nuORF;ENST00000569505.5_1_16:84217022-84220612:-|nuORF ENST00000341690.10_1_16:84218491-84220645:-|nuORF ENST00000341690.10_1_16:84218491-84220645:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7293090820312 2 448.253434 894.492316 0.28055 0.00012576 3.3697 0.0015105 3.6502 0.0016362 448.25347669911116 62.124 0.46082 62.124 61.864 62.324 0 25 22 2 0 0 0 0.19613 1 34533 34533 12.532 5.2423 1 1033200 16629 11971 11401 11611 19789 19789 0.04084918100284085 GPASRVSQL 9 Unmodified _GPASRVSQL_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.75634765625 2 457.756341 913.498129 -0.039568 -1.8112E-05 0.35542 0.0001627 0.31586 0.00014459 457.7565620079365 25.914 0.43382 25.914 25.613 26.047 0 26 20 2 0 0 0 0.05483 1 13295 13295 43.772 11.467 1 1459700 16630 3951 11402 11612 19790 19790 0.03792016611953386 GPATPHPH 8 Unmodified _GPATPHPH_ 0 0 0 REV__ENST00000589498.5_1_18:14101024-14101273:-|nuORF REV__ENST00000589498.5_1_18:14101024-14101273:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.8544311523438 2 407.203744 812.392936 1.1447 0.00046615 1.3537 0.00055124 2.4985 0.0010174 407.20430661426457 21.84 0.24104 19.105 19.015 19.256 -2.7348 15 13 2 0 0 0 8.7369 1 11771 11771 2.8892 2.0956 1 1218000 + 16631 29138 11403 11613 19791 19791 -0.02076479793811359 GPATQVPAL 9 Unmodified _GPATQVPAL_ 0 0 0 nc|ENSG00000179219|Q8N616|LINC00311 nc|ENSG00000179219|Q8N616|LINC00311 nc|ENSG00000179219|Q8N616|LINC00311 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2427062988281 2 427.242535 852.470518 0.82596 0.00035289 0.058907 2.5168E-05 0.88487 0.00037805 427.24256797150906 48.024 0.42934 42.79 42.657 43.087 -5.2339 38 25 2 0 0 0 0.10734 1 30032 30032 32.305 3.8186 1 14150000 16632 16418 11404 11614 19792 19792 0.03838113351696393 GPAWHLPT 8 Unmodified _GPAWHLPT_ 0 0 0 REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF REV__ENST00000462251.1_1_19:11877828-11888701:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7296447753906 2 439.729595 877.444637 1.2031 0.00052902 -0.2956 -0.00012998 0.90747 0.00039904 439.7294219038663 80.097 0.96652 73.921 73.186 74.152 -6.1757 92 58 2 0 0 0 0.57408 1 52377 52377 28.173 1.832 1 13770000 + 16633 27333 11405 11615 19793 19793 0.0010126390006917063 GPCGPCSEIHY 11 2 Carbamidomethyl (C) _GPC(Carbamidomethyl (C))GPC(Carbamidomethyl (C))SEIHY_ GPC(1)GPC(1)SEIHY GPC(120)GPC(120)SEIHY 0 2 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.7567749023438 2 638.757898 1275.50124 0.20755 0.00013257 -1.4349 -0.00091658 -1.2274 -0.00078401 638.7566748269642 39.732 0.33813 35.281 35.156 35.494 -4.4509 50 21 3 0 0 0 7.9033E-11 2 23726 23592;23726 118.89 96.158 1 19496000 16634 1569 11406 11616 19794;19795 19795 148;149 -0.12548844387833924 GPDEAKIKALL 11 Unmodified _GPDEAKIKALL_ 0 0 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;ENST00000434910.1_1_20:6194638-6195010:+|nuORF ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000271793|O60506-2|SYNCRIP ENSG00000125944|ENST00000302271|HNRNPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5644836425781 3 385.564168 1153.67067 0.47893 0.00018466 0.63121 0.00024337 1.1101 0.00042803 385.56429483877866 49.144 0.28742 48.772 48.635 48.923 -0.37171 28 13 3 0 0 0 0.50268 1 26415 26415 16.275 8.119 1 3167100 16635 3910;4687 11407 11617 19796 19796 0.09998543228653034 GPDPFSLIG 9 Unmodified _GPDPFSLIG_ 0 0 0 nc|ENSG00000117335|P15529-2|CD46;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-16|CD46;ENST00000469535.5_1_1:207934598-207940656:+|nuORF nc|ENSG00000117335|P15529-2|CD46 nc|ENSG00000117335|P15529-2|CD46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 903.466552734375 1 902.46181 901.454533 -0.091832 -8.2875E-05 0.61418 0.00055428 0.52235 0.0004714 902.4623581070023 88.076 0.36292 87.571 87.411 87.774 -0.50423 27 15 2 0 0 0 0.49272 2 48135 48135;48238 7.9102 2.1497 1 1446600 16636 3295 11408 11618 19797;19798 19797 -0.00013592885181878955 GPDPSSPAF 9 Unmodified _GPDPSSPAF_ 0 0 0 CON__Q28194;ENSG00000137801|ENST00000260356|THBS1 CON__Q28194 CON__Q28194 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.395263671875 1 874.394124 873.386848 0.50748 0.00044374 0.45856 0.00040096 0.96604 0.0008447 874.3948368886831 38.823 0.15578 38.823 38.747 38.903 0 8 6 2 0 0 0 0.070838 1 20766 20766 39.957 11.47 1 555150 + 16637 189 11409 11619 19799 19799 -0.054910428159928415 GPDTESEEY 9 Unmodified _GPDTESEEY_ 0 0 0 REV__ENSG00000060709|ENST00000690449|RIMBP2 REV__ENSG00000060709|ENST00000690449|RIMBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7008666992188 2 513.698551 1025.38255 NaN NaN NaN NaN NaN NaN NaN 48.404 1 48.36 47.86 48.86 -0.04369 0 0 0 0.82015 1 26110 26110 5.2307 0 1 + 16638 17329 11410 11620 19800 19800 -0.1291259682020609 GPECPAAG 8 Unmodified _GPECPAAG_ 0 0 0 REV__ENSG00000177283|ENST00000374694|FZD8 REV__ENSG00000177283|ENST00000374694|FZD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1497192382812 2 351.149789 700.285025 0.086875 3.0506E-05 -1.0058 -0.00035319 -0.91892 -0.00032268 351.1494852361422 63.969 0.34404 63.969 63.756 64.1 0 22 13 2 0 0 0 0.80143 1 35642 35642 5.7604 0 1 1601900 + 16639 22975 11411 11621 19801 19801 -0.0771061243940494 GPECPMRTPQL 11 Unmodified _GPECPMRTPQL_ 0 0 0 ENST00000497399.1_1_10:97453347-97453710:-|nuORF ENST00000497399.1_1_10:97453347-97453710:-|nuORF ENST00000497399.1_1_10:97453347-97453710:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.7935180664062 2 614.794283 1227.57401 0.36746 0.00022591 -0.64601 -0.00039716 -0.27855 -0.00017125 614.7938276742256 19.949 0.14981 19.957 19.894 20.044 0.0078487 14 7 2 0 0 0 0.65108 1 10154 10154 8.7454 2.0222 1 1252500 16640 14399 11412 11622 19802 19802 -0.030670905944361948 GPEDGRPSL 9 Unmodified _GPEDGRPSL_ 0 0 0 ENSG00000131435|ENST00000253754|PDLIM4;ENST00000474421.1_1_5:131593409-131606787:+|nuORF;nc|ENSG00000131435|P50479-2|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2304077148438 2 464.230156 926.445759 0.021158 9.822E-06 -0.98815 -0.00045873 -0.96699 -0.00044891 464.2296614321057 26.233 0.18948 26.233 26.175 26.364 0 14 9 2 0 0 0 0.28023 1 13522 13522 18.146 2.2992 1 916620 16641 4324 11413 11623 19803 19803 -0.02040566521668552 GPEGPMGTE 9 Unmodified _GPEGPMGTE_ 0 0 0 ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1 ENSG00000174292|ENST00000688331|TNK1 ENSG00000174292|ENST00000688331|TNK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.6851196289062 2 437.684193 873.353833 NaN NaN NaN NaN NaN NaN NaN 74.92 1 74.92 74.42 75.42 0 0 0 0 0.84737 1 41682 41682 1.8442 1.0506 1 16642 8409 11414 11624 19804 19804 -0.0879099293034642 GPEKWIRRL 9 Unmodified _GPEKWIRRL_ 0 0 0 ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENST00000461911.1_1_2:219132163-219134845:-|nuORF ENST00000461911.1_1_2:219132163-219134845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.5638732910156 3 385.564614 1153.67201 -0.18743 -7.2268E-05 1.004 0.00038712 0.8166 0.00031485 385.5640626862586 48.973 0.17065 48.973 48.852 49.023 0 17 8 3 0 0 0 0.52844 1 26936 26936 5.7319 0 1 3960800 16643 13667 11415 11625 19805 19805 0.10132222108086353 GPELEGLPF 9 Unmodified _GPELEGLPF_ 0 0 0 REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7485961914062 2 479.74765 957.480748 0.26318 0.00012626 0.57725 0.00027693 0.84043 0.0004032 479.7480853466852 80.993 0.36228 80.993 80.799 81.161 0 29 16 2 0 0 0 0.41742 1 45011 45011 11.64 0 1 835800 + 16644 21149 11416 11626 19806 19806 0.0003067628629196406 GPELEGLPF 9 Unmodified _GPELEGLPF_ 0 0 0 REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7485656738281 2 479.74765 957.480748 0.85749 0.00041138 -0.16755 -8.038E-05 0.68994 0.000331 479.74803567683597 81.479 0.23109 80.987 80.884 81.116 -0.49247 14 9 2 0 0 0 0.49272 1 44632 44632 7.9102 1.5561 1 455670 + 16645 21149 11416 11626 19807 19807 0.0003067628629196406 GPELEGLPF 9 Unmodified _GPELEGLPF_ 0 0 0 REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 479.74765 957.480748 0.26318 0.00012626 0.57725 0.00027693 0.84043 0.0004032 479.7480853466852 80.993 0.36228 80.993 80.799 81.161 0 0.0033195 0.00013214 NaN 11.64 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 835800 + 16646 21149 11416 11626 0.0003067628629196406 GPELEGLPF 9 Unmodified _GPELEGLPF_ 0 0 0 REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD REV__nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.74765 957.480748 0.85749 0.00041138 -0.16755 -8.038E-05 0.68994 0.000331 479.74803567683597 81.479 0.23109 80.987 80.884 81.116 -0.49247 -0.0033195 -0.00058249 NaN 11.64 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 455670 + 16647 21149 11416 11626 0.0003067628629196406 GPELGVLLV 9 Unmodified _GPELGVLLV_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7770385742188 2 448.776211 895.537869 NaN NaN NaN NaN NaN NaN NaN 70.862 1 70.898 70.398 71.398 0.035515 0 0 0 0.85737 1 39009 39009 0.6015 0 1 + 16648 29698 11417 11627 19808 19808 0.08592143562680121 GPELTEWAATD 11 Unmodified _GPELTEWAATD_ 0 0 0 ENST00000567508.1_1_1:40723406-40723442:-|nuORF ENST00000567508.1_1_1:40723406-40723442:-|nuORF ENST00000567508.1_1_1:40723406-40723442:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8780212402344 3 397.183904 1188.52988 1.2254 0.00048671 1.0591 0.00042064 2.2845 0.00090735 397.18432423942096 19.74 0.34045 17.084 16.898 17.239 -2.6564 70 22 4 0 0 0 0.71036 1 10403 10403 1.3296 0 1 39727000 16649 15436 11418 11628 19809 19809 -0.056840802154283665 GPEMESRSL 9 Unmodified _GPEMESRSL_ 0 0 0 REV__nc|ENSG00000188827|Q8IY92-2|SLX4 REV__nc|ENSG00000188827|Q8IY92-2|SLX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2717895507812 2 503.237124 1004.45969 0.41233 0.0002075 1.4576 0.00073354 1.87 0.00094104 503.2376128683849 39.962 0.31734 39.962 39.853 40.17 0 18 15 2 0 0 0 0.19298 1 21538 21538 4.756 0 1 2290500 + 16650 23736 11419 11629 19810 19810 -0.042356570848596675 GPESIIKVGS 10 Unmodified _GPESIIKVGS_ 0 0 0 REV__ENSG00000155096|ENST00000337198|AZIN1 REV__ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7814331054688 2 493.779482 985.544411 0.68746 0.00033945 0.93574 0.00046205 1.6232 0.0008015 493.78063191602865 85.516 0.61205 85.014 84.732 85.344 -0.5015 94 48 2 0 0 0 0.44373 1 46882 46882 19.257 5.3509 1 16028000 + 16651 21259 11420 11630 19811 19811 0.05106036723395846 GPESKVALLLY 11 Unmodified _GPESKVALLLY_ 0 0 0 REV__ENSG00000177191|ENST00000691102|B3GNT8 REV__ENSG00000177191|ENST00000691102|B3GNT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2330627441406 3 397.232418 1188.67542 1.5495 0.0006155 -0.092503 -3.6745E-05 1.457 0.00057876 397.23224765335925 41.913 0.47039 37.305 37.03 37.5 -4.6079 88 29 4 0 0 0 0.53952 1 25108 25108 11.631 4.1543 1 48554000 + 16652 22969 11421 11631 19812 19812 0.08863427371443322 GPESRTISL 9 Unmodified _GPESRTISL_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7425537109375 2 480.261456 958.50836 0.78394 0.0003765 -0.63172 -0.00030339 0.15223 7.3109E-05 480.2610620035271 36.557 0.24107 36.557 36.448 36.69 0 19 11 2 0 0 0 0.05417 1 19402 19402 47.594 1.8948 1 2272200 16653 9157 11422 11632 19813 19813 0.027445795465382616 GPESRTISL 9 Unmodified _GPESRTISL_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2608642578125 2 480.261456 958.50836 1.3241 0.00063592 -1.2444 -0.00059765 0.079684 3.8269E-05 480.26082463917913 40.912 0.48234 36.304 35.985 36.467 -4.6079 44 29 2 0 0 0 0.047714 1 24488 24488 45.74 3.7843 1 8671300 16654 9157 11422 11632 19814 19814 0.027445795465382616 GPEWRRYHE 9 Unmodified _GPEWRRYHE_ 0 0 0 REV__ENSG00000163728|ENST00000296015|TTC14 REV__ENSG00000163728|ENST00000296015|TTC14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.2960815429688 2 615.294153 1228.57375 NaN NaN NaN NaN NaN NaN NaN 20.06 1 20.06 19.56 20.56 0 0 0 0 0.85737 1 10075 10075 0.6015 0.076735 1 + 16655 21808 11423 11633 19815 19815 -0.031390062077889525 GPFAPIHL 8 Unmodified _GPFAPIHL_ 0 0 0 REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2 REV__nc|ENSG00000158019|Q9NXR7-4|BABAM2 MSMS AL20221201_MKP_PDAC_01 4 426.2412719726562 2 426.242338 850.470124 NaN NaN NaN NaN NaN NaN NaN 44.212 1 39.36 38.86 39.86 -4.852 0 0 0 0.62523 1 26963 26963 32.454 0 1 + 16656 21411 11424 11634 19816 19816 0.038907384225240094 GPFEYEVGY 9 Unmodified _GPFEYEVGY_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2894897460938 2 530.73474 1059.45493 0.74102 0.00039329 1.3131 0.00069689 2.0541 0.0010902 530.7353765489302 60.132 0.25627 60.132 60.023 60.279 0 19 10 2 0 0 0 0.19298 1 33478 33478 4.756 0 1 3504600 16657 6096 11425 11635 19817 19817 -0.07242217955968044 GPFGLIAQY 9 Unmodified _GPFGLIAQY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2582702636719 2 483.258185 964.501818 0.5759 0.00027831 0.38178 0.0001845 0.95768 0.00046281 483.25827187006155 79.091 0.38792 78.605 78.436 78.824 -0.48596 39 16 3 0 0 0 0.22317 2 43271 43271;43375 20.871 11.524 1 1233000 16658 5183 11426 11636 19818;19819 19818 0.01814686385796449 GPFGLIAQY 9 Unmodified _GPFGLIAQY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122735394-122750988:-|nuORF ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2582702636719 2 483.258185 964.501818 0.49221 0.00023787 0.18565 8.9718E-05 0.67787 0.00032758 483.2584446215242 78.574 0.35793 78.627 78.419 78.777 0.052452 32 14 3 0 0 0 0.034897 1 43372 43372 52.693 31.822 1 2459500 16659 5183 11426 11636 19820 19820 0.01814686385796449 GPFGPFGRT 9 Unmodified _GPFGPFGRT_ 0 0 0 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2395629882812 2 468.240327 934.466101 0.41376 0.00019374 0.16437 7.6965E-05 0.57813 0.0002707 468.2403924020449 49.228 0.26603 49.185 49.049 49.315 -0.04369 19 12 2 0 0 0 0.25681 1 26610 26610 19.257 1.122 1 1339600 + 16660 23928 11427 11637 19821 19821 -0.003753510711931085 GPFGPFGRT 9 Unmodified _GPFGPFGRT_ 0 0 0 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 468.240327 934.466101 0.67882 0.00031785 -0.47525 -0.00022253 0.20357 9.5319E-05 468.24025620317855 49.482 0.25433 49.09 48.964 49.218 -0.3923 -0.047576 -0.00024652 NaN 19.257 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6231400 + 16661 23928 11427 11637 -0.003753510711931085 GPFGPFGRT 9 Unmodified _GPFGPFGRT_ 0 0 0 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 REV__nc|ENSG00000197467|Q5TAT6-11|COL13A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 468.240327 934.466101 0.41376 0.00019374 0.16437 7.6965E-05 0.57813 0.0002707 468.2403924020449 49.228 0.26603 49.185 49.049 49.315 -0.04369 0.047576 0.00035247 NaN 19.257 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1339600 + 16662 23928 11427 11637 -0.003753510711931085 GPFGRMPTY 9 Oxidation (M) _GPFGRM(Oxidation (M))PTY_ GPFGRM(1)PTY GPFGRM(60)PTY 0 0 1 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.24462890625 2 521.244752 1040.47495 -0.35369 -0.00018436 -0.28206 -0.00014702 -0.63575 -0.00033138 521.2446412701303 34.545 0.19017 34.354 34.25 34.44 -0.19131 21 8 4 0 0 0 0.023481 1 18049 18049 60.074 29.437 1 5041300 16663 10808 11428 11638 19822 19822 1728 -0.04366745497009106 GPFGRMPTY 9 Oxidation (M) _GPFGRM(Oxidation (M))PTY_ GPFGRM(1)PTY GPFGRM(59)PTY 0 0 1 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.245361328125 2 521.244752 1040.47495 -0.43763 -0.00022811 0.30713 0.00016009 -0.13049 -6.8018E-05 521.2450322278202 35.15 0.28346 34.927 34.762 35.045 -0.2224 28 12 3 0 0 0 0.024882 1 18388 18388 58.679 26.562 1 5191400 16664 10808 11428 11638 19823 19823 1728 -0.04366745497009106 GPFGRMPTY 9 Oxidation (M) _GPFGRM(Oxidation (M))PTY_ GPFGRM(1)PTY GPFGRM(44)PTY 0 0 1 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2455444335938 2 521.244752 1040.47495 0.068228 3.5563E-05 -0.14285 -7.446E-05 -0.074623 -3.8897E-05 521.2449268611324 34.283 0.21223 34.311 34.203 34.416 0.027405 22 9 3 0 0 0 0.05483 1 18065 18065 43.772 22.026 1 2788600 16665 10808 11428 11638 19824 19824 1728 -0.04366745497009106 GPFGRMPTY 9 Oxidation (M) _GPFGRM(Oxidation (M))PTY_ GPFGRM(1)PTY GPFGRM(48)PTY 0 0 1 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2456665039062 2 521.244752 1040.47495 -0.038547 -2.0092E-05 0.75103 0.00039147 0.71248 0.00037138 521.2450231761194 34.958 0.2638 34.985 34.818 35.082 0.027401 25 11 3 0 0 0 0.044011 1 18420 18420 47.749 22.349 1 2864700 16666 10808 11428 11638 19825 19825 1728 -0.04366745497009106 GPFGRMPTY 9 Oxidation (M) _GPFGRM(Oxidation (M))PTY_ GPFGRM(1)PTY GPFGRM(56)PTY 0 0 1 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2463989257812 2 521.244752 1040.47495 0.96165 0.00050125 0.7002 0.00036497 1.6618 0.00086623 521.2451738550785 39.476 0.31571 35.025 34.84 35.156 -4.4509 26 18 2 0 0 0 0.028475 1 23382 23382 56.177 31.503 1 13900000 16667 10808 11428 11638 19826 19826 1728 -0.04366745497009106 GPFGRMPTY 9 Unmodified _GPFGRMPTY_ 0 0 0 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2467041015625 2 513.247295 1024.48004 0.60801 0.00031206 -1.3092 -0.00067193 -0.70117 -0.00035988 513.2469243281159 48.343 0.25777 48.302 48.14 48.398 -0.041122 15 12 2 0 0 0 0.023481 1 26067 26067 60.074 38.327 1 1839000 16668 10808 11428 11639 19827 19827 -0.031224416344002748 GPFGRMPTY 9 Unmodified _GPFGRMPTY_ 0 0 0 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2488403320312 2 513.247295 1024.48004 1.1263 0.00057806 1.4908 0.00076517 2.6171 0.0013432 513.2482983273225 54.031 0.45423 48.166 47.929 48.383 -5.8653 66 26 3 0 0 0 0.0086904 2 34246 34109;34246 107.19 78.7 1 53833000 16669 10808 11428 11639 19828;19829 19829 -0.031224416344002748 GPFLGPHGP 9 Unmodified _GPFLGPHGP_ 0 0 0 REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7294616699219 2 439.729595 877.444637 1.0808 0.00047526 -0.87 -0.00038256 0.2108 9.2696E-05 439.7291767496207 46.274 0.32964 46.241 46.101 46.431 -0.033421 38 15 3 0 0 0 0.085487 1 24862 24862 36.466 0 1 22721000 + 16670 20571 11429 11640 19830 19830 0.0010126390008053932 GPFLGPHGP 9 Unmodified _GPFLGPHGP_ 0 0 0 REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7297668457031 2 439.729595 877.444637 1.2031 0.00052902 -0.2956 -0.00012998 0.90747 0.00039904 439.7294219038663 80.097 0.96652 73.921 73.186 74.152 -6.1757 92 58 2 0 0 0 0.085487 2 52663 52517;52663 36.466 8.2929 1 13770000 + 16671 20571 11429 11640 19831;19832 19832 0.0010126390008053932 GPFLGPHGP 9 Unmodified _GPFLGPHGP_ 0 0 0 REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 440.2313537597656 2 439.729595 877.444637 1.2031 0.00052902 -0.2956 -0.00012998 0.90747 0.00039904 439.7294219038663 80.097 0.96652 73.921 73.186 74.152 -6.1757 92 58 2 0 0 0 0.14144 1 52517 52517 28.173 0 1 13770000 + 16672 20571 11429 11640 19833 19833 0.0010126390008053932 GPFPHHHSY 9 Unmodified _GPFPHHHSY_ 0 0 0 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1665344238281 3 360.166631 1077.47806 -0.57908 -0.00020856 1.1442 0.0004121 0.56512 0.00020354 360.1670006259605 16.52 0.11758 16.521 16.46 16.578 0.0010548 98 38 3 0 0 0 0.39863 1 8130 8130 12.241 9.5055 1 3521700 16673 1113 11430 11641 19834 19834 -0.057577343279945126 GPFPHHHSY 9 Unmodified _GPFPHHHSY_ 0 0 0 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.1669006347656 3 360.166631 1077.47806 1.0002 0.00036024 0.13691 4.9309E-05 1.1371 0.00040955 360.1666239488055 17.085 0.25002 14.499 14.376 14.626 -2.5866 149 47 4 0 0 0 0.012148 1 8879 8879 57.722 57.722 1 33916000 16674 1113 11430 11641 19835 19835 -0.057577343279945126 GPFPHHHSY 9 Unmodified _GPFPHHHSY_ 0 0 0 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENST00000550858.1_1_12:42681476-42682067:+|nuORF nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7462768554688 2 539.746308 1077.47806 0.19482 0.00010515 -0.46328 -0.00025005 -0.26846 -0.0001449 539.746004341146 17.096 0.15452 14.509 14.417 14.572 -2.5866 46 29 2 0 0 0 0.010877 1 8880 8880 77.984 61.042 1 2634300 16675 1113 11430 11641 19836 19836 -0.057577343279945126 GPFRDVPAY 9 Unmodified _GPFRDVPAY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7623291015625 2 511.258717 1020.50288 0.92858 0.00047475 -0.25847 -0.00013215 0.67011 0.0003426 511.2584528167863 49.437 0.35427 44.041 43.867 44.222 -5.3961 36 21 2 0 0 0 0.011671 1 30834 30834 75.761 53.025 1 32628000 16676 7093 11431 11642 19837 19837 -0.006550992453071558 GPFRSKKAVL 10 Unmodified _GPFRSKKAVL_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2295227050781 3 368.229231 1101.66586 0.059596 2.1945E-05 1.0386 0.00038243 1.0982 0.00040437 368.22964879300514 20.129 0.20169 20.139 20.006 20.208 0.010551 21 9 3 0 0 0 0.63089 1 10232 10232 9.544 3.3521 1 1010700 16677 8942 11432 11643 19838 19838 0.11909703876540334 GPFRSKKAVL 10 Unmodified _GPFRSKKAVL_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2294921875 3 368.229231 1101.66586 0.8153 0.00030022 0.12638 4.6539E-05 0.94168 0.00034676 368.2292568710616 23.807 0.45901 20.98 20.772 21.231 -2.8273 72 27 4 0 0 0 0.1887 2 12965 12853;12965 35.08 8.8115 1 36888000 16678 8942 11432 11643 19839;19840 19840 0.11909703876540334 GPFSETYTF 9 Unmodified _GPFSETYTF_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.735107421875 2 524.73474 1047.45493 0.67231 0.00035278 -0.72625 -0.00038109 -0.053944 -2.8306E-05 524.7344114000846 66.602 0.23727 66.602 66.421 66.658 0 15 10 2 0 0 0 0.25297 1 37140 37140 19.439 10.846 1 1108100 16679 1157 11433 11644 19841 19841 -0.06690217955997468 GPFYAHAL 8 Unmodified _GPFYAHAL_ 0 0 0 REV__ENSG00000157227|ENST00000311852|MMP14;REV__ENSG00000125966|ENST00000246186|MMP24;REV__ENSG00000102996|ENST00000219271|MMP15;REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000125966|ENST00000246186|MMP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2243347167969 2 438.224146 874.433738 NaN NaN NaN NaN NaN NaN NaN 17.932 1 17.932 17.432 18.432 0 0 0 0 0.9706 1 8879 8879 6.3541 0 1 + 16680 19532;18273;21311;21373 11434 11645 19842 19842 -0.008501384741975926 GPGARHSQILN 11 Unmodified _GPGARHSQILN_ 0 0 0 ENST00000553851.2_1_X:48928815-48929193:-|nuORF ENST00000553851.2_1_X:48928815-48929193:-|nuORF ENST00000553851.2_1_X:48928815-48929193:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.8738403320312 3 383.875628 1148.60505 NaN NaN NaN NaN NaN NaN NaN 15.652 1 13.124 12.624 13.624 -2.5273 0 0 0 0.94144 1 8051 8051 0.50596 0.051438 1 16681 15198 11435 11646 19843 19843 0.03669566826351911 GPGCTWDSLRN 11 Unmodified _GPGCTWDSLRN_ 0 0 0 ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2;ENST00000549572.5_1_12:53898463-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1798400878906 3 402.517112 1204.52951 -0.58074 -0.00023376 -1.7682 -0.00071172 -2.3489 -0.00094548 402.85081158976146 18.306 0.11382 18.306 18.247 18.361 0 21 17 2 0 0 0 0.73115 1 9069 9069 0.45452 0 1 594650 16682 5165 11436 11647 19844 19844 -0.06457778416256588 GPGEPDPM 8 Unmodified _GPGEPDPM_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.3331298828125 1 799.329081 798.321804 -0.74682 -0.00059696 0.38536 0.00030803 -0.36146 -0.00028893 799.3294689727021 33.105 0.27522 33.105 32.968 33.243 0 23 13 2 0 0 0 0.78849 1 17274 17274 9.3474 3.587 1 2020000 16683 7972 11437 11648 19845 19845 -0.08542360613500932 GPGGDLDH 8 Unmodified _GPGGDLDH_ 0 0 0 REV__ENST00000433770.1_1_10:31982192-31996309:-|nuORF REV__ENST00000433770.1_1_10:31982192-31996309:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1702270507812 2 384.169567 766.324582 NaN NaN NaN NaN NaN NaN NaN 25.045 1 25.028 24.528 25.528 -0.017006 0 0 0 0.97444 1 12815 12815 2.5775 0.73324 1 + 16684 27002 11438 11649 19846 19846 -0.06792769164337642 GPGKAKDAQI 10 Unmodified _GPGKAKDAQI_ 0 0 0 REV__nc|ENSG00000133115|Q8TAV4-2|STOML3 REV__nc|ENSG00000133115|Q8TAV4-2|STOML3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.776611328125 2 492.777274 983.539994 0.53295 0.00026263 -1.5643 -0.00077083 -1.0313 -0.0005082 492.77665171371586 36.325 0.19974 36.325 36.249 36.448 0 16 9 2 0 0 0 0.32072 1 19276 19276 26.268 2.2476 1 3253800 + 16685 19909 11439 11650 19847 19847 0.04756572300470907 GPGKPAQF 8 Unmodified _GPGKPAQF_ 0 0 0 ENST00000563885.5_1_16:67862648-67864187:-|nuORF;ENST00000436104.6_1_16:67862410-67864187:-|nuORF;ENST00000568495.5_1_16:67862172-67864127:-|nuORF;ENST00000569862.5_1_16:67862172-67864187:-|nuORF ENST00000563885.5_1_16:67862648-67864187:-|nuORF ENST00000563885.5_1_16:67862648-67864187:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.4254760742188 1 801.425365 800.418088 1.0734 0.00086027 -0.83314 -0.0006677 0.24028 0.00019257 801.4246450334663 65.976 0.52268 59.8 59.594 60.117 -6.1757 47 30 2 0 0 0 0.67481 1 43041 43041 19.439 4.8573 1 16545000 16686 13330 11440 11651 19848 19848 0.009895750087594024 GPGLWGVK 8 Unmodified _GPGLWGVK_ 0 0 0 REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2346801757812 2 407.234513 812.454474 NaN NaN NaN NaN NaN NaN NaN 19.586 1 19.594 19.094 20.094 0.0078487 0 0 0 0.97444 1 9968 9968 2.5775 1.7838 1 + 16687 28690 11441 11652 19849 19849 0.04074451905478327 GPGNRPPQ 8 Unmodified _GPGNRPPQ_ 0 0 0 REV__ENST00000406902.5_1_22:47073608-47073866:+|nuORF REV__ENST00000406902.5_1_22:47073608-47073866:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7146301269531 2 411.714476 821.4144 NaN NaN NaN NaN NaN NaN NaN 27.044 1 27.044 26.544 27.544 0 0 0 0 0.95607 1 13922 13922 9.3474 0 1 + 16688 26660 11442 11653 19850 19850 -0.003450947651003844 GPGPLRESL 9 Unmodified _GPGPLRESL_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2590637207031 2 463.258717 924.50288 0.57394 0.00026588 0.58095 0.00026913 1.1549 0.00053501 463.25900413667364 37.69 0.35313 37.69 37.493 37.846 0 32 17 2 0 0 0 0.05483 2 20040 20040;20151 43.772 10.987 1 2110000 16689 10906 11443 11654 19851;19852 19851 0.03760900754696195 GPGRRLCSL 9 Unmodified _GPGRRLCSL_ 0 0 0 ENSG00000246922|ENST00000559089|UBAP1L ENSG00000246922|ENST00000559089|UBAP1L ENSG00000246922|ENST00000559089|UBAP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 959.5220336914062 1 958.525095 957.517819 -0.6305 -0.00060435 -0.46259 -0.0004434 -1.0931 -0.0010478 958.5246431643616 77.377 0.65736 76.894 76.558 77.215 -0.4826 83 30 4 0 0 0 0.58865 1 42536 42536 2.0598 1.2661 1 22935000 16690 10735 11444 11655 19853 19853 0.037360693510549936 GPGSRPSPF 9 Unmodified _GPGSRPSPF_ 0 0 0 REV__ENSG00000115488|ENST00000233840|NEU2 REV__ENSG00000115488|ENST00000233840|NEU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2305297851562 2 451.229959 900.445365 1.1115 0.00050155 0.74513 0.00033623 1.8567 0.00083778 451.2301600550986 58.344 0.51701 58.284 57.935 58.452 -0.060722 64 25 4 0 0 0 0.43463 1 31850 31850 10.824 1.4765 1 21496000 + 16691 18986 11445 11656 19854 19854 -0.008839414508543086 GPGVSIPEAI 10 Unmodified _GPGVSIPEAI_ 0 0 0 REV__ENST00000297107.10_1_5:153798899-153799208:+|nuORF REV__ENST00000297107.10_1_5:153798899-153799208:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2610778808594 2 470.260925 938.507297 0.56633 0.00026632 1.7532 0.00082448 2.3196 0.0010908 470.2610593924734 67.232 0.32658 67.232 67.064 67.39 0 24 13 3 0 0 0 0.66569 1 37464 37464 6.7232 0.51738 1 1059100 + 16692 25277 11446 11657 19855 19855 0.035583651776164515 GPGYLGDIAI 10 Unmodified _GPGYLGDIAI_ 0 0 0 ENST00000373401.2_1_6:37605146-37606471:-|nuORF;ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1 ENST00000373401.2_1_6:37605146-37606471:-|nuORF ENST00000373401.2_1_6:37605146-37606471:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2626342773438 2 488.260925 974.507297 0.21426 0.00010461 2.7748 0.0013548 2.9891 0.0014595 488.26255654707154 61.536 0.45533 61.536 61.366 61.821 0 26 20 2 0 0 0 0.57332 1 34366 34366 12.532 0.89125 1 1871300 16693 2862 11447 11658 19856 19856 0.01902365177613774 GPHHLGVV 8 Unmodified _GPHHLGVV_ 0 0 0 nc|ENSG00000160179|P45844-8|ABCG1 nc|ENSG00000160179|P45844-8|ABCG1 nc|ENSG00000160179|P45844-8|ABCG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2301635742188 2 408.229762 814.444972 NaN NaN NaN NaN NaN NaN NaN 43.695 1 43.679 43.179 44.179 -0.015667 0 0 0 0.97444 1 23422 23422 2.8892 0 1 16694 16314 11448 11659 19857 19857 0.030326836199606078 GPHIASVTL 9 Unmodified _GPHIASVTL_ 0 0 0 CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;CLTC-VMP1|10|fusion CACNG4-VMP1|1|fusion CACNG4-VMP1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7558288574219 2 447.75581 893.497067 0.51516 0.00023067 0.15852 7.0979E-05 0.67368 0.00030164 447.75611079068364 47.294 0.25886 47.294 47.125 47.384 0 17 11 2 0 0 0 0.28047 1 25915 25915 18.135 10.225 1 1538500 16695 48 11449 11660 19858 19858 0.04605802243054313 GPHIDVISM 9 Oxidation (M) _GPHIDVISM(Oxidation (M))_ GPHIDVISM(1) GPHIDVISM(100) 0 0 1 ENSG00000103485|ENST00000395384|QPRT;ENST00000564967.1_1_16:29708453-29708729:+|nuORF;ENST00000219771.7_1_16:29690360-29708729:+|nuORF ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7455749511719 2 492.744585 983.474617 0.18078 8.9079E-05 0.75705 0.00037303 0.93783 0.00046211 492.74506198593264 38.003 0.28296 38.003 37.846 38.129 0 36 13 3 0 0 0 0.0086629 1 20233 20233 101.72 34.378 1 7547300 16696 2143 11450 11661 19859 19859 371 -0.017781652168764595 GPHIDVISM 9 Oxidation (M) _GPHIDVISM(Oxidation (M))_ GPHIDVISM(1) GPHIDVISM(85) 0 0 1 ENSG00000103485|ENST00000395384|QPRT;ENST00000564967.1_1_16:29708453-29708729:+|nuORF;ENST00000219771.7_1_16:29690360-29708729:+|nuORF ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7448120117188 2 492.744585 983.474617 0.67877 0.00033446 -0.62578 -0.00030835 0.052984 2.6108E-05 492.74418994490816 43.533 0.30749 38.768 38.677 38.985 -4.7648 30 18 2 0 0 0 0.0090851 1 26472 26472 85.357 30.583 1 8900800 16697 2143 11450 11661 19860 19860 371 -0.017781652168764595 GPHKPDEY 8 Unmodified _GPHKPDEY_ 0 0 0 REV__ENST00000474436.1_1_9:35089091-35089349:-|nuORF REV__ENST00000474436.1_1_9:35089091-35089349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7197875976562 2 471.719424 941.424296 -0.49239 -0.00023227 -0.21652 -0.00010214 -0.70891 -0.00033441 471.71934634978146 28.022 0.57074 28.022 27.721 28.292 0 76 31 3 0 0 0 0.80044 1 14384 14384 6.3541 0 1 9100400 + 16698 27564 11451 11662 19861 19861 -0.04875951550377522 GPHQRHIAL 9 Unmodified _GPHQRHIAL_ 0 0 0 ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7914428710938 2 514.79105 1027.56755 0.63934 0.00032913 -0.12157 -6.2584E-05 0.51777 0.00026654 514.7909556167659 18.425 0.17411 15.803 15.69 15.864 -2.6215 23 14 2 0 0 0 0.031062 1 9688 9688 54.774 37.661 1 1563700 16699 2370 11452 11663 19862 19862 0.054865203513600136 GPHTQFAEL 9 Unmodified _GPHTQFAEL_ 0 0 0 ENST00000568207.5_1_15:75315958-75337059:+|nuORF ENST00000568207.5_1_15:75315958-75337059:+|nuORF ENST00000568207.5_1_15:75315958-75337059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2478637695312 2 500.248349 998.482145 0.10419 5.2122E-05 0.042831 2.1426E-05 0.14702 7.3548E-05 500.24812448584396 45.314 0.1901 45.314 45.189 45.379 0 16 9 2 0 0 0 0.06294 1 24689 24689 41.84 1.8899 1 8750700 16700 15448 11453 11664 19863 19863 -0.017156896249616693 GPHVPPITQ 9 Unmodified _GPHVPPITQ_ 0 0 0 REV__ENSG00000168754|ENST00000490605|FAM178B REV__ENSG00000168754|ENST00000490605|FAM178B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7611694335938 2 473.261259 944.507966 -0.91934 -0.00043509 2.2827 0.0010803 1.3633 0.00064521 473.2624539223618 32.345 0.30904 32.345 32.105 32.414 0 24 15 2 0 0 0 0.21242 1 16913 16913 5.2307 0 1 3574400 + 16701 22338 11454 11665 19864 19864 0.033492046173250856 GPHWAWTPF 9 Unmodified _GPHWAWTPF_ 0 0 0 ENST00000486173.1_1_1:214638231-214725660:-|nuORF ENST00000486173.1_1_1:214638231-214725660:-|nuORF ENST00000486173.1_1_1:214638231-214725660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2611083984375 2 549.761426 1097.5083 0.35044 0.00019266 -0.3457 -0.00019005 0.0047425 2.6072E-06 549.761043582739 84.1 0.20724 84.1 83.986 84.194 0 13 10 2 0 0 0 0.21798 1 46628 46628 2.3027 0 1 425180 16702 14179 11455 11666 19865 19865 -0.03655375662833649 GPIFKRKKR 9 Unmodified _GPIFKRKKR_ 0 0 0 REV__ENST00000477078.2_1_10:106037658-106045722:+|nuORF REV__ENST00000477078.2_1_10:106037658-106045722:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3687133789062 2 565.369467 1128.72438 -0.30665 -0.00017337 -0.67924 -0.00038402 -0.98589 -0.00055739 565.3691033792509 103.59 0.19989 103.54 103.47 103.67 -0.04792 13 7 3 0 0 0 0.61256 1 57546 57546 0.6015 0.14316 1 3097100 + 16703 27605 11456 11667 19866 19866 0.16516805241690236 GPIGVLLFSPQ 11 Unmodified _GPIGVLLFSPQ_ 0 0 0 REV__ENSG00000183313|ENST00000332249|OR52L1 REV__ENSG00000183313|ENST00000332249|OR52L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5527648925781 3 376.553492 1126.63865 NaN NaN NaN NaN NaN NaN NaN 40.627 1 40.627 40.127 41.127 0 0 0 0 0.90364 1 21851 21851 3.5927 0.27303 1 + 16704 23335 11457 11668 19867 19867 0.08039175545513899 GPIHKDDFRVI 11 Unmodified _GPIHKDDFRVI_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.3567504882812 2 648.856586 1295.69862 0.31808 0.00020639 -1.8497 -0.0012002 -1.5317 -0.00099383 649.3569639403859 63.079 0.14742 62.593 62.542 62.689 -0.48617 11 6 2 0 0 0 0.68427 1 34407 34407 5.7319 2.1354 1 1268800 + 16705 19619 11458 11669 19868 19868 0.06259866208733911 GPIKSLKW 8 Unmodified _GPIKSLKW_ 0 0 0 REV__ENST00000604567.5_1_12:122242794-122243780:+|nuORF REV__ENST00000604567.5_1_12:122242794-122243780:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.78466796875 2 464.78437 927.554188 0.85563 0.00039768 0.25787 0.00011985 1.1135 0.00051753 464.7843360914815 39.141 0.38785 34.69 34.488 34.876 -4.4509 60 24 3 0 0 0 0.42423 1 23132 23132 42.095 7.9072 1 31119000 + 16706 29287 11459 11670 19869 19869 0.08751269519427751 GPISSILVNKY 11 Unmodified _GPISSILVNKY_ 0 0 0 nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8414916992188 2 595.842613 1189.67067 0.42604 0.00025385 -0.025876 -1.5418E-05 0.40016 0.00023844 595.842488173707 58.619 0.38769 58.558 58.414 58.801 -0.060719 49 19 3 0 0 0 1.2531000000000001E-20 2 31907 31907;32012 145.13 110.73 1 9261800 16707 6386 11460 11671 19870;19871 19870 0.08342543228650356 GPISYVVVM 9 Oxidation (M) _GPISYVVVM(Oxidation (M))_ GPISYVVVM(1) GPISYVVVM(110) 0 0 1 ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.5145874023438 1 980.512131 979.504854 0.15803 0.00015495 -0.57874 -0.00056746 -0.42071 -0.00041251 980.5112637157376 58.334 0.26379 57.843 57.741 58.005 -0.49079 27 12 3 0 0 0 0.0088154 1 31699 31699 106.85 76.621 1 2725600 16708 2240 11461 11672 19872 19872 385 0.01428193448316506 GPITPRCR 8 Unmodified _GPITPRCR_ 0 0 0 REV__ENST00000376138.7_2_10:27149870-27149954:-|nuORF REV__ENST00000376138.7_2_10:27149870-27149954:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.2490234375 2 450.247629 898.480705 NaN NaN NaN NaN NaN NaN NaN 39.719 1 35.268 34.768 35.768 -4.4509 0 0 0 0.9249 1 23613 23613 15.768 2.2603 1 + 16709 26219 11462 11673 19873 19873 0.0274039780529165 GPKFVYLVF 9 Unmodified _GPKFVYLVF_ 0 0 0 REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF REV__ENST00000488625.6_1_10:31817466-31817604:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.8145141601562 2 535.307678 1068.6008 0.60183 0.00032216 0.25174 0.00013476 0.85357 0.00045692 535.3056285841876 85.747 0.91051 79.572 79.107 80.017 -6.1757 114 52 3 0 0 0 0.16229 1 56180 56180 18.135 0 1 55804000 + 16710 27847 11463 11674 19874 19874 0.06924709350687408 GPKGKAKS 8 Unmodified _GPKGKAKS_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MSMS AL20221201_MKP_PDAC_01 4 386.7389221191406 2 386.73742 771.460287 NaN NaN NaN NaN NaN NaN NaN 107.38 1 101.2 100.7 101.7 -6.1757 0 0 0 0.97444 1 71824 71824 0.6015 0.6015 1 16711 1297 11464 11675 19875 19875 0.06541550417136932 GPKGKAKS 8 Unmodified _GPKGKAKS_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MSMS AL20221201_MKP_PDAC_01 4 386.7385559082031 2 386.73742 771.460287 NaN NaN NaN NaN NaN NaN NaN 107.55 1 101.37 100.87 101.87 -6.1757 0 0 0 0.97444 1 71926 71926 0.6015 0.6015 1 16712 1297 11464 11675 19876 19876 0.06541550417136932 GPKGKKKKGP 10 Unmodified _GPKGKKKKGP_ 0 0 0 REV__nc|ENSG00000087494|P12272-2|PTHLH REV__nc|ENSG00000087494|P12272-2|PTHLH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2871704101562 2 512.834926 1023.6553 0.55194 0.00028305 -0.0092933 -4.766E-06 0.54264 0.00027829 512.8350244849298 48.623 0.23816 48.58 48.476 48.714 -0.04369 26 11 3 0 0 0 0.23634 1 26292 26292 6.7232 1.9672 1 4963200 + 16713 17790 11465 11676 19877 19877 0.14441721222135584 GPKHKIKKTL 10 Unmodified _GPKHKIKKTL_ 0 0 0 REV__ENSG00000158901|ENST00000289953|WFDC8 REV__ENSG00000158901|ENST00000289953|WFDC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3770141601562 2 575.376958 1148.73936 1.6306 0.00093822 -0.53688 -0.00030891 1.0937 0.00062931 575.3761901432857 109.89 0.064529 103.72 103.69 103.75 -6.1757 23 15 2 0 0 0 0.72247 1 73349 73349 0.40072 0 1 2083700 + 16714 21451 11466 11677 19878 19878 0.17094252319020597 GPKISVVLV 9 Unmodified _GPKISVVLV_ 0 0 0 REV__ENSG00000106688|ENST00000262352|SLC1A1 REV__ENSG00000106688|ENST00000262352|SLC1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2998352050781 2 456.299853 910.585153 -0.33284 -0.00015188 0.86028 0.00039255 0.52744 0.00024067 456.30004832404217 105.13 0.072273 105.08 105.04 105.11 -0.048737 28 17 2 0 0 0 0.61381 1 58338 58338 0.52476 0 1 8613400 + 16715 18529 11467 11678 19879 19879 0.1262842283366581 GPKQPGRVL 9 Unmodified _GPKQPGRVL_ 0 0 0 ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B;ENST00000505569.5_1_5:176948978-176952218:-|nuORF;nc|ENSG00000146067|Q96PV7-2|FAM193B;ENSG00000146067|ENST00000514747|FAM193B ENST00000510479.5_1_5:176948978-176959043:-|nuORF ENST00000510479.5_1_5:176948978-176959043:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.2903137207031 2 476.290351 950.566149 NaN NaN NaN NaN NaN NaN NaN 20.444 1 17.751 17.251 18.251 -2.693 0 0 0 0.17247 1 10892 10892 34.102 14.845 1 16716 14590 11468 11679 19880 19880 0.08888886262604956 GPKQQFSTL 9 Unmodified _GPKQQFSTL_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.23828125 2 503.271824 1004.5291 1.1317 0.00056957 -0.34557 -0.00017391 0.78617 0.00039565 503.27157560166887 36.967 0.1824 32.683 32.599 32.782 -4.2835 18 10 2 0 0 0 0.062282 1 21661 21661 49.933 25.912 1 10513000 16717 832 11469 11680 19881 19881 0.027011699261947797 GPKRQNRILLL 11 Unmodified _GPKRQNRILLL_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 654.9188232421875 2 654.417146 1306.81974 1.457 0.00095347 0.098268 6.4308E-05 1.5552 0.0010178 654.4169942815361 105.04 0.25854 98.868 98.705 98.964 -6.1757 103 28 6 0 0 0 0.30599 1 70414 70414 0.30703 0.03801 1 4841800000 16718 8543 11470 11681 19882 19882 0.17860113642086617 GPKWPEPVF 9 Unmodified _GPKWPEPVF_ 0 0 0 ENSG00000009724|ENST00000400897|MASP2;nc|ENSG00000009724|O00187-2|MASP2 ENSG00000009724|ENST00000400897|MASP2 ENSG00000009724|ENST00000400897|MASP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8541259765625 3 352.855282 1055.54402 NaN NaN NaN NaN NaN NaN NaN 22.588 1 22.588 22.088 23.088 0 0 0 0 0.83812 1 11491 11491 2.9952 1.151 1 16719 406 11471 11682 19883 19883 0.01846661794161264 GPKYKCTVSL 10 Unmodified _GPKYKCTVSL_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5;ENST00000477223.1_1_7:103767297-103805736:-|nuORF ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8671264648438 3 365.867082 1094.57942 -0.084149 -3.0788E-05 0.33286 0.00012178 0.24871 9.0995E-05 365.86739360678655 32.177 0.25905 32.048 31.94 32.199 -0.12915 19 9 3 0 0 0 0.68719 1 16754 16754 2.086 0 1 1807200 16720 7247 11472 11683 19884 19884 0.03590956259677114 GPLAGHMP 8 Unmodified _GPLAGHMP_ 0 0 0 ENSG00000215012|ENST00000328554|RTL10 ENSG00000215012|ENST00000328554|RTL10 ENSG00000215012|ENST00000328554|RTL10 MSMS AL20221201_MKP_PDAC_01 4 390.1981811523438 2 390.197074 778.379594 NaN NaN NaN NaN NaN NaN NaN 11.544 1 9.0625 8.5625 9.5625 -2.482 0 0 0 0.97444 1 5812 5812 0.79363 0 1 16721 10515 11473 11684 19885 19885 -0.018460538974181873 GPLCDCYYSAI 11 Unmodified _GPLCDCYYSAI_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1718444824219 3 402.171954 1203.49403 -0.29431 -0.00011836 0.3288 0.00013224 0.034494 1.3873E-05 402.1722720754054 51.919 0.23703 51.919 51.802 52.039 0 15 10 2 0 0 0 0.71036 1 28701 28701 5.0475 3.5924 1 4468300 + 16722 18166 11474 11685 19886 19886 -0.09957576988313122 GPLCFNGWWN 10 Unmodified _GPLCFNGWWN_ 0 0 0 REV__ENST00000464406.5_1_3:9965750-9972589:+|nuORF REV__ENST00000464406.5_1_3:9965750-9972589:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5111083984375 3 398.51141 1192.5124 NaN NaN NaN NaN NaN NaN NaN 15.44 1 15.44 14.94 15.94 0 0 0 0 1.0019 1 7437 7437 0.15932 0 1 + 16723 27374 11475 11686 19887 19887 -0.07615654231403823 GPLDIHNEP 9 Unmodified _GPLDIHNEP_ 0 0 0 REV__ENSG00000162490|ENST00000294485|DRAXIN REV__ENSG00000162490|ENST00000294485|DRAXIN MSMS AL20221201_MKP_PDAC_01 4 496.2449035644531 2 496.245806 990.47706 NaN NaN NaN NaN NaN NaN NaN 18.783 1 16.162 15.662 16.662 -2.6215 0 0 0 0.83049 1 9913 9913 3.9444 0.3479 1 + 16724 21650 11476 11687 19888 19888 -0.018559934875838735 GPLDVLGPSL 10 Unmodified _GPLDVLGPSL_ 0 0 0 ENST00000521314.5_1_16:67198707-67203685:+|nuORF;ENSG00000102878|ENST00000521374|HSF4;ENST00000520528.1_1_16:67201435-67203617:+|nuORF;ENST00000523562.5_1_16:67201036-67203307:+|nuORF;nc|ENSG00000102878|Q9ULV5-2|HSF4 ENST00000521314.5_1_16:67198707-67203685:+|nuORF ENST00000521314.5_1_16:67198707-67203685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2756042480469 2 484.276575 966.538597 0.39742 0.00019246 -0.42997 -0.00020823 -0.032557 -1.5767E-05 484.27627065173175 58.822 0.24133 58.331 58.232 58.474 -0.49079 18 11 2 0 0 0 4.3778E-05 1 32002 32002 120.45 12.453 1 2693900 16725 2072 11477 11688 19889 19889 0.05398938211715176 GPLEERQIAY 10 Unmodified _GPLEERQIAY_ 0 0 0 nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.3051147460938 2 588.306395 1174.59824 0.12346 7.2632E-05 -1.4076 -0.0008281 -1.2841 -0.00075547 588.8072158260117 39.595 0.19223 39.595 39.508 39.7 0 12 8 2 0 0 0 0.087164 1 21248 21248 49.527 26.791 1 1918800 16726 7714 11478 11689 19890 19890 0.01792209155087221 GPLEVAQVF 9 Unmodified _GPLEVAQVF_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000130158|ENST00000294618|DOCK6 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2645263671875 2 480.263468 958.512382 NaN NaN NaN NaN NaN NaN NaN 76.289 1 75.81 75.31 76.31 -0.47945 0 0 0 0.17247 1 41760 41760 34.102 19.264 1 16727 3233;4182;2473 11479 11690 19891 19891 0.031466690402339736 GPLFRNSQL 9 Unmodified _GPLFRNSQL_ 0 0 0 nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF nc|ENSG00000104960|Q86YD1-2|PTOV1 nc|ENSG00000104960|Q86YD1-2|PTOV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2857666015625 2 516.285266 1030.55598 0.020403 1.0534E-05 0.689 0.00035572 0.7094 0.00036625 516.2854190793335 44.82 0.23748 44.798 44.678 44.916 -0.022064 27 11 3 0 0 0 0.0082353 1 24032 24032 96.111 41.337 1 21905000 16728 2264 11480 11691 19892 19892 0.04192278537379934 GPLGLYFPL 9 Unmodified _GPLGLYFPL_ 0 0 0 REV__ENSG00000185823|ENST00000329468|NPAP1 REV__ENSG00000185823|ENST00000329468|NPAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7754516601562 2 488.778754 975.542954 1.076 0.00052595 -3.565 -0.0017425 -2.4889 -0.0012165 488.77640353178697 50.459 0.29204 44.92 44.725 45.017 -5.5391 32 18 2 0 0 0 0.1492 1 31607 31607 28.173 0.54443 1 20885000 + 16729 23526 11481 11692 19893 19893 0.05420447425262864 GPLLPYPI 8 Unmodified _GPLLPYPI_ 0 0 0 REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF REV__ENST00000541233.1_1_12:6554564-6560555:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.260498046875 2 435.260197 868.50584 1.5861 0.00069037 1.5193 0.00066129 3.1054 0.0013517 435.26053067420077 101.02 0.21916 94.839 94.688 94.907 -6.1757 20 12 2 0 0 0 0.80624 1 67710 67710 2.8892 0 1 19162000 + 16730 28595 11482 11693 19894 19894 0.06632775879518249 GPLNRLWQF 9 Unmodified _GPLNRLWQF_ 0 0 0 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 MSMS AL20221201_MKP_PDAC_01 4 377.5404968261719 3 377.541697 1129.60326 NaN NaN NaN NaN NaN NaN NaN 20.96 1 18.267 17.767 18.767 -2.693 0 0 0 0.61214 1 11189 11189 12.241 6.0488 1 + 16731 19136 11483 11694 19895 19895 0.04364557808344216 GPLNRLWQF 9 Unmodified _GPLNRLWQF_ 0 0 0 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 REV__nc|ENSG00000118156|Q9H0D2-2|ZNF541 MSMS AL20221201_MKP_PDAC_01 4 377.5412902832031 3 377.541697 1129.60326 NaN NaN NaN NaN NaN NaN NaN 21.139 1 18.446 17.946 18.946 -2.693 0 0 0 0.61214 1 11292 11292 12.241 6.0488 1 + 16732 19136 11483 11694 19896 19896 0.04364557808344216 GPLPLETAGT 10 Unmodified _GPLPLETAGT_ 0 0 0 REV__ENST00000597868.5_1_19:47111871-47112407:+|nuORF REV__ENST00000597868.5_1_19:47111871-47112407:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.2581481933594 2 478.258382 954.502212 NaN NaN NaN NaN NaN NaN NaN 57.821 1 51.793 51.293 52.293 -6.0275 0 0 0 0.71851 1 37003 37003 15.847 0 1 + 16733 29230 11484 11695 19897 19897 0.023140613149848832 GPLPPHLAL 9 Unmodified _GPLPPHLAL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559322-77559421:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7767333984375 2 457.776545 913.538538 NaN NaN NaN NaN NaN NaN NaN 62.304 1 61.816 61.316 62.316 -0.48764 0 0 0 0.24185 1 33943 33943 28.173 13.592 1 16734 4745 11485 11696 19898 19898 0.07830983002349967 GPLPPHLAL 9 Unmodified _GPLPPHLAL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559322-77559421:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MSMS AL20221201_MKP_PDAC_01 4 457.7763977050781 2 457.776545 913.538538 NaN NaN NaN NaN NaN NaN NaN 67.796 1 61.62 61.12 62.12 -6.1757 0 0 0 0.38239 1 44192 44192 20.871 1.6142 1 16735 4745 11485 11696 19899 19899 0.07830983002349967 GPLPRHPC 8 Unmodified _GPLPRHPC_ 0 0 0 ENST00000463837.5_1_11:64121564-64124957:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B ENST00000463837.5_1_11:64121564-64124957:+|nuORF ENST00000463837.5_1_11:64121564-64124957:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7294921875 2 438.729072 875.443591 0.86127 0.00037787 -0.60555 -0.00026567 0.25572 0.00011219 438.72868264745546 28.909 0.48577 25.608 25.362 25.848 -3.3016 41 26 2 0 0 0 0.5284 2 16219 16104;16219 32.117 8.9685 1 53499000 16736 13704 11486 11697 19900;19901 19901 0.0008872625952562885 GPLPRHPC 8 Unmodified _GPLPRHPC_ 0 0 0 ENST00000463837.5_1_11:64121564-64124957:+|nuORF;nc|ENSG00000168071|A6NC98-5|CCDC88B ENST00000463837.5_1_11:64121564-64124957:+|nuORF ENST00000463837.5_1_11:64121564-64124957:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 438.729072 875.443591 -0.28919 -0.00012688 0.16099 7.063E-05 -0.1282 -5.6247E-05 438.72909689062266 25.59 0.39655 25.59 25.486 25.883 0 -0.0088663 0.00028097 NaN 32.117 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1347300 16737 13704 11486 11697 0.0008872625952562885 GPLQHAAPQL 10 Unmodified _GPLQHAAPQL_ 0 0 0 REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF REV__ENST00000397861.6_1_17:54910427-54911098:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2855834960938 2 516.285266 1030.55598 NaN NaN NaN NaN NaN NaN NaN 44.966 1 44.944 44.444 45.444 -0.022064 0 0 0 0.24983 1 24139 24139 39.957 3.8303 1 + 16738 26545 11487 11698 19902 19902 0.04192278537357197 GPLQHGIVY 9 Unmodified _GPLQHGIVY_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;ENST00000469228.1_1_10:104853627-104854248:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2694396972656 2 492.269084 982.523616 0.83263 0.00040988 -1.9264 -0.0009483 -1.0938 -0.00053842 492.2690060781956 42.851 0.39951 42.851 42.586 42.985 0 48 20 3 0 0 0 0.023164 1 23228 23228 60.39 15.983 1 19963000 16739 1191 11488 11699 19903 19903 0.03165491134382137 GPLQHGIVY 9 Unmodified _GPLQHGIVY_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;ENST00000469228.1_1_10:104853627-104854248:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2694091796875 2 492.269084 982.523616 0.34686 0.00017075 -0.30763 -0.00015144 0.039228 1.9311E-05 492.268784750251 43.097 0.31983 42.786 42.61 42.93 -0.31039 36 14 3 0 0 0 0.042911 2 22884 22884;22996 48.346 14.243 1 34305000 16740 1191 11488 11699 19904;19905 19904 0.03165491134382137 GPLQHGIVY 9 Unmodified _GPLQHGIVY_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;ENST00000469228.1_1_10:104853627-104854248:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2693176269531 2 492.269084 982.523616 0.66674 0.00032822 -0.1092 -5.3757E-05 0.55754 0.00027446 492.2689599377563 48.054 0.48327 42.82 42.55 43.033 -5.2339 95 29 4 0 0 0 0.013472 2 29902 29772;29902 70.716 32.742 1 168960000 16741 1191 11488 11699 19906;19907 19907 0.03165491134382137 GPLQSVQVF 9 Unmodified _GPLQSVQVF_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.53173828125 1 974.530558 973.523281 -0.01519 -1.4803E-05 0.75209 0.00073294 0.7369 0.00071814 974.5307594092851 69.189 0.31906 68.708 68.554 68.873 -0.48071 25 13 3 0 0 0 0.07916 1 37811 37811 37.974 17.52 1 952990 16742 2285 11489 11700 19908 19908 0.03546071414530161 GPLQSVQVF 9 Unmodified _GPLQSVQVF_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7691345214844 2 487.768917 973.523281 0.22274 0.00010865 0.3378 0.00016477 0.56054 0.00027341 487.7689492687943 69.218 0.86924 68.737 68.443 69.312 -0.48071 87 37 4 0 0 0 0.012148 2 37836 37836;37938 74.423 38.379 1 22530000 16743 2285 11489 11700 19909;19910 19909 0.03546071414530161 GPLQSVQVF 9 Unmodified _GPLQSVQVF_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7694396972656 2 487.768917 973.523281 NaN NaN NaN NaN NaN NaN NaN 68.84 1 68.865 68.365 69.365 0.025146 0 0 0 0.20498 1 37823 37823 30.225 20.877 1 16744 2285 11489 11700 19911 19911 0.03546071414530161 GPLQSVQVF 9 Unmodified _GPLQSVQVF_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7694396972656 2 487.768917 973.523281 0.75079 0.00036621 -0.15468 -7.5448E-05 0.59611 0.00029076 487.7685349172715 76.12 0.85645 69.945 69.396 70.252 -6.1757 105 46 3 0 0 0 0.0083087 3 49768 49638;49768;49887 100.37 60.414 1 62990000 16745 2285 11489 11700 19912;19913;19914 19913 0.03546071414530161 GPLQSVQVF 9 Unmodified _GPLQSVQVF_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.5306396484375 1 974.530558 973.523281 0.4547 0.00044312 -0.50549 -0.00049262 -0.050792 -4.9498E-05 974.5298820652532 76.094 0.51206 69.918 69.634 70.146 -6.1757 35 27 2 0 0 0 0.00856 2 49706 49706;49830 100.37 42.9 1 11905000 16746 2285 11489 11700 19915;19916 19915 0.03546071414530161 GPLRKAVTL 9 Unmodified _GPLRKAVTL_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;IFIT5|p.L201V|1|0.2|ENSG00000152778|chr10:89417800-89417800|C/G|missense_variant ENSG00000152778|ENST00000371795|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8078002929688 2 477.808377 953.6022 0.067452 3.2229E-05 -0.051566 -2.4639E-05 0.015886 7.5902E-06 477.8081671133805 29.17 0.14766 29.201 29.127 29.274 0.030106 10 5 2 0 0 0 0.05447 1 15227 15227 43.858 23.405 1 1435900 16747 6214 11490 11701 19917 19917 0.12354343439471904 GPLRSGGL 8 Unmodified _GPLRSGGL_ 0 0 0 ENST00000468300.5_1_17:41276090-41277404:-|nuORF;ENST00000471181.6_2_17:41276090-41277404:-|nuORF ENST00000468300.5_1_17:41276090-41277404:-|nuORF ENST00000468300.5_1_17:41276090-41277404:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.7228698730469 2 378.72177 755.428987 NaN NaN NaN NaN NaN NaN NaN 16.769 1 14.213 13.713 14.713 -2.557 0 0 0 0.88449 1 8712 8712 19.257 3.4098 1 16748 13804 11491 11702 19918 19918 0.041489773830562626 GPLSRVKSL 9 Unmodified _GPLSRVKSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7980346679688 2 478.798009 955.581465 -0.09716 -4.652E-05 0.3465 0.0001659 0.24934 0.00011938 478.798154561267 30.681 0.44796 30.711 30.456 30.904 0.030104 39 19 3 0 0 0 0.0082981 1 16060 16060 96.936 58.962 1 2771900 16749 1104;4358 11492 11703 19919 19919 0.10189753059808027 GPLSRVKSL 9 Unmodified _GPLSRVKSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000131899|ENST00000316843|LLGL1 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7978820800781 2 478.798009 955.581465 1.0479 0.00050175 0.49411 0.00023658 1.542 0.00073833 478.7980773910628 34.943 0.4761 30.847 30.565 31.041 -4.0951 54 27 3 0 0 0 0.00010239 2 20095 20095;20224 152.89 88.65 1 15479000 16750 1104;4358 11492 11703 19920;19921 19920 0.10189753059808027 GPLSYVKEM 9 Oxidation (M) _GPLSYVKEM(Oxidation (M))_ GPLSYVKEM(1) GPLSYVKEM(52) 0 0 1 ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2592163085938 2 520.260068 1038.50558 NaN NaN NaN NaN NaN NaN NaN 35.151 1 35.151 34.651 35.651 0 0 0 0 0.068038 1 18571 18571 51.63 26.23 1 16751 2685 11493 11704 19922 19922 463 -0.012130119026551256 GPLTTQYVY 9 Unmodified _GPLTTQYVY_ 0 0 0 ENSG00000139508|ENST00000266943|SLC46A3;nc|ENSG00000139508|Q7Z3Q1-2|SLC46A3 ENSG00000139508|ENST00000266943|SLC46A3 ENSG00000139508|ENST00000266943|SLC46A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7697143554688 2 521.266207 1040.51786 0.98345 0.00051264 2.2319 0.0011634 3.2153 0.001676 521.7690884572369 39.314 0.29351 34.863 34.734 35.028 -4.4509 25 17 2 0 0 0 0.25681 1 23330 23330 19.257 4.4187 1 23914000 16752 5161 11494 11705 19923 19923 -0.0007765216794268781 GPLYKNGSL 9 Unmodified _GPLYKNGSL_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1 ENSG00000153201|ENST00000283195|RANBP2 MSMS AL20221201_MKP_PDAC_01 4 474.7605895996094 2 474.761092 947.507631 NaN NaN NaN NaN NaN NaN NaN 37.212 1 32.929 32.429 33.429 -4.2835 0 0 0 0.032808 1 21822 21822 65.235 15.302 1 16753 6246;6244;9359 11495 11706 19924 19924 0.031777848974684275 GPMNLRAAF 9 Unmodified _GPMNLRAAF_ 0 0 0 ENSG00000144120|ENST00000272521|TMEM177 ENSG00000144120|ENST00000272521|TMEM177 ENSG00000144120|ENST00000272521|TMEM177 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7557678222656 2 488.755287 975.496021 1.4427 0.00070515 -0.052981 -2.5895E-05 1.3898 0.00067925 488.7553864831126 58.742 0.30386 52.668 52.547 52.851 -6.0745 23 16 2 0 0 0 0.047196 1 37658 37658 46.021 26.582 1 10097000 16754 5585 11496 11707 19925 19925 0.00729264602477997 GPNGAIIHY 9 Unmodified _GPNGAIIHY_ 0 0 0 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1;ENST00000513817.5_1_10:111637546-111643934:-|nuORF;ENST00000472336.5_1_10:111635284-111643934:-|nuORF;ENST00000488118.6_1_10:111637546-111648351:-|nuORF nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2458190917969 2 471.245609 940.476666 0.31652 0.00014916 -0.51441 -0.00024241 -0.19789 -9.3256E-05 471.2452994429726 37.316 0.26867 37.316 37.159 37.428 0 27 13 3 0 0 0 0.0084562 1 19814 19814 90.836 34.295 1 7020300 16755 2542 11497 11708 19926 19926 0.0040463158322836534 GPNGAIIHY 9 Unmodified _GPNGAIIHY_ 0 0 0 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1;ENST00000513817.5_1_10:111637546-111643934:-|nuORF;ENST00000472336.5_1_10:111635284-111643934:-|nuORF;ENST00000488118.6_1_10:111637546-111648351:-|nuORF nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 nc|ENSG00000108039|Q9NQW7-2|XPNPEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2455444335938 2 471.245609 940.476666 1.1806 0.00055636 0.39359 0.00018548 1.5742 0.00074184 471.2452704059383 41.962 0.40511 37.277 37.035 37.44 -4.6846 51 25 3 0 0 0 0.016494 1 25212 25212 67.035 24.067 1 16291000 16756 2542 11497 11708 19927 19927 0.0040463158322836534 GPNGGIVTSL 10 Unmodified _GPNGGIVTSL_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7507019042969 2 457.750724 913.486896 0.48797 0.00022337 0.81711 0.00037403 1.3051 0.0005974 457.75037496530587 52.571 0.32642 52.571 52.402 52.728 0 34 14 3 0 0 0 0.0093317 1 29071 29071 88.904 46.809 1 5395900 16757 10102 11498 11709 19928 19928 0.026691945178299648 GPNGGIVTSL 10 Unmodified _GPNGGIVTSL_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.4970703125 1 914.494172 913.486896 0.027044 2.4731E-05 -0.55782 -0.00051013 -0.53078 -0.00048539 914.4935914926283 52.55 0.23414 52.55 52.443 52.678 0 14 10 2 0 0 0 0.095098 1 29096 29096 47.749 19.262 1 1465800 16758 10102 11498 11709 19929 19929 0.026691945178299648 GPNGGIVTSL 10 Unmodified _GPNGGIVTSL_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;nc|ENSG00000198522|Q9HCN4-2|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 458.2850036621094 2 457.750724 913.486896 0.99542 0.00045565 0.0034544 1.5812E-06 0.99887 0.00045723 457.75092376872016 60.255 0.25136 54.14 53.964 54.216 -6.1147 14 12 2 0 0 0 0.16163 1 38734 38734 30.637 2.1497 1 10541000 16759 10102 11498 11709 19930 19930 0.026691945178299648 GPNLKAYIFL 10 Unmodified _GPNLKAYIFL_ 0 0 0 REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13 REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5552673339844 3 379.221853 1134.64373 0.72212 0.00027385 0.13704 5.1969E-05 0.85916 0.00032581 379.22320267200894 16.794 0.19538 14.237 14.157 14.353 -2.557 46 32 2 0 0 0 0.68719 1 8724 8724 2.086 0 1 2007800 + 16760 18548 11499 11710 19931 19931 0.08179479408113366 GPNPKSSRTTL 11 Unmodified _GPNPKSSRTTL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.5470581054688 3 386.547288 1156.62004 -0.63336 -0.00024483 -0.3845 -0.00014863 -1.0179 -0.00039345 386.5474764594984 16.2 0.096661 16.2 16.143 16.24 0 54 28 3 0 0 0 0.67477 1 7868 7868 6.6235 1.2207 1 920560 16761 2558 11500 11711 19932 19932 0.04799013903675586 GPNPKSSRTTL 11 Unmodified _GPNPKSSRTTL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.5477600097656 3 386.547288 1156.62004 -0.54482 -0.0002106 -0.12563 -4.8562E-05 -0.67045 -0.00025916 386.5476462411509 16.722 0.12453 16.723 16.637 16.762 0.0010548 75 37 3 0 0 0 0.70147 1 8240 8240 4.1166 2.9018 1 1351300 16762 2558 11500 11711 19933 19933 0.04799013903675586 GPNPKSSRTTL 11 Unmodified _GPNPKSSRTTL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5480041503906 3 386.547288 1156.62004 -0.020643 -7.9794E-06 -1.3414 -0.0005185 -1.362 -0.00052648 386.5478026564158 16.351 0.14299 16.356 16.306 16.449 0.0050564 21 10 3 0 0 0 0.60536 1 8203 8203 11.065 6.1683 1 928820 16763 2558 11500 11711 19934 19934 0.04799013903675586 GPNPKSSRTTL 11 Unmodified _GPNPKSSRTTL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5488891601562 3 386.547288 1156.62004 0.70198 0.00027135 0.086296 3.3358E-05 0.78827 0.0003047 386.547395110288 17.033 0.21093 14.446 14.35 14.561 -2.5866 92 39 3 0 0 0 0.12646 2 8832 8830;8832 39.413 25.894 1 9214600 16764 2558 11500 11711 19935;19936 19936 0.04799013903675586 GPNPKSSRTTL 11 Unmodified _GPNPKSSRTTL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MSMS AL20221201_MKP_PDAC_01 4 579.3176879882812 2 579.317294 1156.62004 NaN NaN NaN NaN NaN NaN NaN 17.076 1 14.489 13.989 14.989 -2.5866 0 0 0 0.48432 1 8898 8898 19.626 7.3853 1 16765 2558 11500 11711 19937 19937 0.04799013903675586 GPNRNRLLL 9 Unmodified _GPNRNRLLL_ 0 0 0 nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4 nc|ENSG00000168679|O15374-4|SLC16A4 nc|ENSG00000168679|O15374-4|SLC16A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5488891601562 3 351.548964 1051.62506 0.0052588 1.8487E-06 0.48875 0.00017182 0.49401 0.00017367 351.5491433509506 33.89 0.26767 33.919 33.769 34.036 0.028934 37 11 4 0 0 0 0.11784 1 17823 17823 31.268 17.75 1 11063000 16766 7789 11501 11712 19938 19938 0.1013136255696736 GPNRNRLLL 9 Unmodified _GPNRNRLLL_ 0 0 0 nc|ENSG00000168679|O15374-4|SLC16A4;nc|ENSG00000168679|O15374-2|SLC16A4;nc|ENSG00000168679|O15374-5|SLC16A4;ENSG00000168679|ENST00000369779|SLC16A4 nc|ENSG00000168679|O15374-4|SLC16A4 nc|ENSG00000168679|O15374-4|SLC16A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5498962402344 3 351.548964 1051.62506 1.8897 0.00066431 -0.21086 -7.4127E-05 1.6788 0.00059019 351.5489355179193 37.114 0.51605 32.83 32.54 33.056 -4.2835 59 31 3 0 0 0 0.085319 2 21791 21643;21791 36.506 14.916 1 26572000 16767 7789 11501 11712 19939;19940 19940 0.1013136255696736 GPPAGDPL 8 Unmodified _GPPAGDPL_ 0 0 0 REV__ENSG00000182631|ENST00000330120|RXFP3 REV__ENSG00000182631|ENST00000330120|RXFP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.1871643066406 2 362.187229 722.359904 1.4803 0.00053615 -0.80215 -0.00029053 0.67816 0.00024562 362.1868673158181 42.365 0.44582 37.68 37.423 37.869 -4.6846 51 29 2 0 0 0 0.80232 1 25511 25511 5.2307 0 1 32572000 + 16768 23286 11502 11713 19941 19941 -0.012381066365151128 GPPAKGQF 8 Unmodified _GPPAKGQF_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6 nc|ENSG00000079156|Q9BZF3-3|OSBPL6 nc|ENSG00000079156|Q9BZF3-3|OSBPL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2164001464844 2 401.216321 800.418088 0.37116 0.00014892 0.52632 0.00021117 0.89748 0.00036009 401.21641825293153 59.993 0.27604 59.993 59.923 60.199 0 17 12 2 0 0 0 0.72953 1 33459 33459 14.582 0 1 1020200 16769 16055 11503 11714 19942 19942 0.009895750087707711 GPPFQPSF 8 Unmodified _GPPFQPSF_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7159423828125 2 438.716153 875.417754 -0.27362 -0.00012004 0.31112 0.00013649 0.037496 1.645E-05 438.716224126836 60.937 1.089 60.447 60.069 61.158 -0.48932 74 52 2 0 0 0 0.37649 2 33379 33083;33379 46.921 8.7697 1 3301400 + 16770 19336 11504 11715 19943;19944 19944 -0.02493844711091242 GPPGTGKTLL 10 Unmodified _GPPGTGKTLL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000557444.5_1_16:90055269-90057690:+|nuORF;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000427658.1_1_16:90057264-90060229:+|nuORF;ENST00000437774.5_1_16:90055269-90060229:+|nuORF;ENST00000418696.5_2_16:90046667-90060229:+|nuORF;ENST00000436447.5_1_16:90046667-90060229:+|nuORF;nc|ENSG00000186625|O75449-2|KATNA1;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;ENSG00000165916|ENST00000298852|PSMC3;ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2;ENST00000496420.5_1_7:92123531-92130970:-|nuORF;ENSG00000186625|ENST00000367411|KATNA1;ENST00000481905.5_1_6:149919348-149924475:-|nuORF;ENSG00000141385|ENST00000269143|AFG3L2 nc|ENSG00000087191|P62195-2|PSMC5;nc|ENSG00000136758|Q96TA2-3|YME1L1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;nc|ENSG00000100764|P62191-2|PSMC1;ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000165916|ENST00000298852|PSMC3;ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENST00000496420.5_1_7:92123531-92130970:-|nuORF;ENSG00000186625|ENST00000367411|KATNA1;ENSG00000141385|ENST00000269143|AFG3L2 ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7786254882812 2 470.776742 939.538931 1.1324 0.00053311 0.17351 8.1683E-05 1.3059 0.00061479 470.77689461503314 40.802 0.48234 36.273 36.064 36.546 -4.5294 67 29 3 0 0 0 0.060508 1 24450 24450 55.503 0 1 26786000 16771 4039;1458;7406;4852;3803;1873;1838;14368;7589;9487;5322 11505 11716 19945 19945 0.0667435793156983 GPPKYTKSVL 10 Unmodified _GPPKYTKSVL_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.537109375 3 363.881608 1088.623 1.3479 0.00049049 0.45167 0.00016435 1.7996 0.00065484 363.88141899508196 30.129 0.44576 26.632 26.41 26.856 -3.497 41 21 3 0 0 0 0.63399 1 16921 16921 5.4027 0 1 32405000 16772 1830 11506 11717 19946 19946 0.08222889028479585 GPPLHEFDF 9 Unmodified _GPPLHEFDF_ 0 0 0 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 ENSG00000267221|ENST00000587304|C17orf113 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7479248046875 2 529.750724 1057.4869 NaN NaN NaN NaN NaN NaN NaN 24.192 1 24.192 23.692 24.692 0 0 0 0 0.82396 1 12354 12354 4.756 1.7608 1 16773 10867 11507 11718 19947 19947 -0.03954805482203483 GPPPQVHF 8 Unmodified _GPPPQVHF_ 0 0 0 REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7302856445312 2 439.729595 877.444637 1.2031 0.00052902 -0.2956 -0.00012998 0.90747 0.00039904 439.7294219038663 80.097 0.96652 73.921 73.186 74.152 -6.1757 92 58 2 0 0 0 0.55063 1 52233 52233 30.198 2.0251 1 13770000 + 16774 29470 11508 11719 19948 19948 0.00101263900091908 GPPRELMPLL 10 Unmodified _GPPRELMPLL_ 0 0 0 ENST00000324771.12_1_6:30867215-30867293:+|nuORF ENST00000324771.12_1_6:30867215-30867293:+|nuORF ENST00000324771.12_1_6:30867215-30867293:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8822937011719 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 79.565 1 73.389 72.889 73.889 -6.1757 0 0 0 0.5282 1 52146 52146 24.882 3.2914 1 16775 11804 11509 11720 19949 19949 0.07075235530692225 GPPRGKGF 8 Unmodified _GPPRGKGF_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2306518554688 2 408.229762 814.444972 -0.033184 -1.3547E-05 1.9002 0.00077573 1.867 0.00076218 408.23045571644144 42.338 0.25657 42.329 42.164 42.421 -0.0088196 19 11 2 0 0 0 0.80676 1 22647 22647 2.5775 0.27475 1 9070000 16776 10011 11510 11721 19950 19950 0.03032683619949239 GPPRGKGF 8 Unmodified _GPPRGKGF_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 408.229762 814.444972 0.28871 0.00011786 2.1134 0.00086273 2.4021 0.00098059 408.2306637654852 42.38 0.20627 42.38 42.238 42.445 0 0.025242 5.7167E-05 NaN 2.5775 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2002400 16777 10011 11510 11721 0.03032683619949239 GPPRSRTFNV 10 Unmodified _GPPRSRTFNV_ 0 0 0 ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5404357910156 3 377.540357 1129.59924 0.078088 2.9481E-05 1.2724 0.0004804 1.3505 0.00050988 377.5407461017602 19.241 0.25942 19.249 19.08 19.34 0.0078487 33 15 3 0 0 0 0.67459 1 9734 9734 3.0723 0 1 795120 16778 709 11511 11722 19951 19951 0.03962468314648504 GPPSLYDPPSS 11 Unmodified _GPPSLYDPPSS_ 0 0 0 REV__ENSG00000173334|ENST00000311922|TRIB1 REV__ENSG00000173334|ENST00000311922|TRIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7647094726562 2 558.764029 1115.5135 -0.2142 -0.00011969 0.39223 0.00021917 0.17803 9.9476E-05 558.764324090488 28.811 0.15699 28.811 28.704 28.861 0 12 7 2 0 0 0 0.48615 1 14917 14917 17.113 0.1706 1 1585100 + 16779 22723 11512 11723 19952 19952 -0.03963161381534519 GPPVPFLHQ 9 Unmodified _GPPVPFLHQ_ 0 0 0 REV__nc|ENSG00000154760|Q68D06-2|SLFN13 REV__nc|ENSG00000154760|Q68D06-2|SLFN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2718505859375 2 496.271627 990.528701 0.62274 0.00030905 -0.34384 -0.00017064 0.27889 0.00013841 496.2713988632455 46.543 0.35103 46.206 46.034 46.385 -0.33664 42 17 3 0 0 0 0.16776 1 24883 24883 26.341 8.2063 1 29483000 + 16780 21245 11513 11724 19953 19953 0.03305794997004341 GPPVQNQV 8 Unmodified _GPPVQNQV_ 0 0 0 ENST00000480011.5_1_7:156447331-156451185:+|nuORF ENST00000480011.5_1_7:156447331-156451185:+|nuORF ENST00000480011.5_1_7:156447331-156451185:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.724609375 2 419.72451 837.434466 0.36421 0.00015287 1.6608 0.00069708 2.025 0.00084995 419.724991788924 40.445 0.25321 40.45 40.295 40.549 0.0050545 16 11 2 0 0 0 0.80143 1 21577 21577 5.7604 0 1 2221000 16781 14051 11514 11725 19954 19954 0.009246561748568638 GPQAVRAAL 9 Unmodified _GPQAVRAAL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7619934082031 2 441.761426 881.5083 1.0165 0.00044904 -3.7651 -0.0016633 -2.7486 -0.0012142 441.7592888664163 34.715 0.60775 30.62 30.23 30.838 -4.0951 55 35 3 0 0 0 0.018301 2 20164 20030;20164 65.235 15.302 1 12783000 16782 983 11515 11726 19955;19956 19956 0.06280624337171048 GPQEERALL 9 Unmodified _GPQEERALL_ 0 0 0 ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.775390625 2 506.774731 1011.53491 0.4999 0.00025334 1.0025 0.00050806 1.5024 0.0007614 506.77523334671577 36.018 0.1785 36.018 35.896 36.074 0 17 8 3 0 0 0 0.062454 1 19098 19098 41.956 7.5538 1 4445400 16783 7660 11516 11727 19957 19957 0.029602684378687627 GPQINERI 8 Unmodified _GPQINERI_ 0 0 0 REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7558288574219 2 463.756341 925.498129 0.20845 9.6671E-05 -0.68622 -0.00031824 -0.47777 -0.00022157 463.7563287113513 24 0.29937 21.173 21.024 21.323 -2.8273 35 16 3 0 0 0 0.30525 1 13033 13033 54.774 2.5052 1 3984700 + 16784 17177 11517 11728 19958 19958 0.03240016611948704 GPQINERI 8 Unmodified _GPQINERI_ 0 0 0 REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 463.756341 925.498129 0.15847 7.3493E-05 -1.1492 -0.00053295 -0.99073 -0.00045946 463.75575243850574 21.442 0.17172 21.442 21.362 21.533 0 0.13436 -0.00013935 NaN 54.774 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 838830 + 16785 17177 11517 11728 0.03240016611948704 GPQLRGPRLA 10 Unmodified _GPQLRGPRLA_ 0 0 0 REV__ENST00000395863.7_1_20:55840810-55841128:-|nuORF REV__ENST00000395863.7_1_20:55840810-55841128:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.8192138671875 2 532.819807 1063.62506 NaN NaN NaN NaN NaN NaN NaN 28.686 1 25.537 25.037 26.037 -3.1482 0 0 0 0.59582 1 16025 16025 19.257 0 1 + 16786 26490 11518 11729 19959 19959 0.0957936255695131 GPQNPDSRARL 11 Unmodified _GPQNPDSRARL_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 404.5338439941406 3 404.214421 1209.62143 1.2309 0.00049754 0.65355 0.00026417 1.8844 0.00076171 404.21451859430016 19.965 0.19789 17.308 17.189 17.387 -2.6564 23 10 3 0 0 0 0.28844 1 10637 10637 16.275 6.124 1 1788000 16787 598 11519 11730 19960 19960 0.025006479924286396 GPQPGLRRAL 10 Unmodified _GPQPGLRRAL_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5494995117188 3 355.548964 1063.62506 1.4316 0.00050899 -0.39733 -0.00014127 1.0342 0.00036772 355.54876607160355 28.885 0.57835 25.711 25.332 25.91 -3.1745 80 30 3 0 0 0 0.1899 1 15994 15994 34.932 7.7088 1 282420000 16788 1710 11520 11731 19961 19961 0.09579362556928572 GPRAGGSVVL 10 Unmodified _GPRAGGSVVL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7675476074219 2 456.766709 911.518865 -0.53609 -0.00024487 0.30732 0.00014037 -0.22876 -0.00010449 456.76685166059593 32.829 0.23049 32.829 32.677 32.908 0 17 11 2 0 0 0 0.40136 1 17169 17169 21.537 5.6898 1 2394600 16789 2692 11521 11732 19962 19962 0.05956606991605895 GPRAGGSVVL 10 Unmodified _GPRAGGSVVL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7666931152344 2 456.766709 911.518865 -0.35794 -0.00016349 1.2829 0.000586 0.92499 0.0004225 456.767139978061 32.843 0.19172 32.683 32.57 32.762 -0.15919 12 7 2 0 0 0 0.40136 1 17109 17109 21.537 5.6898 1 1383400 16790 2692 11521 11732 19963 19963 0.05956606991605895 GPRAGGSVVL 10 Unmodified _GPRAGGSVVL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7673645019531 2 456.766709 911.518865 0.48696 0.00022243 0.031408 1.4346E-05 0.51836 0.00023677 456.76660667347903 36.374 0.40593 32.181 31.996 32.402 -4.1928 30 24 2 0 0 0 0.20962 1 21261 21261 32.786 13.529 1 20317000 16791 2692 11521 11732 19964 19964 0.05956606991605895 GPRALTEEL 9 Unmodified _GPRALTEEL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2695617675781 2 493.269281 984.52401 0.077432 3.8195E-05 -0.2089 -0.00010304 -0.13147 -6.4849E-05 493.26912515185666 40.078 0.32223 40.078 39.892 40.214 0 48 15 4 0 0 0 0.028475 1 21502 21502 56.177 22.075 1 49236000 16792 8367 11522 11733 19965 19965 0.031128660635772576 GPRAVFVLL 9 Unmodified _GPRAVFVLL_ 0 0 0 ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3052978515625 2 486.30547 970.596387 0.34941 0.00016992 0.18116 8.8101E-05 0.53057 0.00025802 486.3055294095146 77.544 0.35654 77.594 77.418 77.774 0.05011 35 14 3 0 0 0 0.16226 2 42766 42766;42874 26.884 7.4447 1 9879700 16793 976 11523 11734 19966;19967 19966 0.10991244927799926 GPRAVFVLL 9 Unmodified _GPRAVFVLL_ 0 0 0 ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3065185546875 2 486.30547 970.596387 1.2458 0.00060585 0.53595 0.00026064 1.7818 0.00086648 486.3056757787699 97.872 0.26463 91.696 91.553 91.817 -6.1757 33 17 3 0 0 0 0.026094 1 64827 64827 57.471 25.354 1 24204000 16794 976 11523 11734 19968 19968 0.10991244927799926 GPRCSCVSF 9 2 Carbamidomethyl (C) _GPRC(Carbamidomethyl (C))SC(Carbamidomethyl (C))VSF_ GPRC(1)SC(1)VSF GPRC(46)SC(46)VSF 0 2 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;ENST00000464234.5_1_3:195474049-195480138:-|nuORF ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2310791015625 2 535.231319 1068.44808 1.061 0.0005679 1.2856 0.0006881 2.3467 0.001256 535.231360515171 34.108 0.34029 30.122 29.965 30.306 -3.9853 30 18 2 0 0 0 0.047788 1 19625 19625 45.7 15.475 1 8538900 16795 5669 11524 11735 19969 19969 576;577 -0.08340177379864144 GPRDLETLSF 10 Unmodified _GPRDLETLSF_ 0 0 0 ENST00000392521.6_1_12:120125205-120125286:-|nuORF ENST00000392521.6_1_12:120125205-120125286:-|nuORF ENST00000392521.6_1_12:120125205-120125286:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.1994934082031 3 378.864506 1133.57169 1.491 0.0005649 -0.17861 -6.767E-05 1.3124 0.00049723 378.8643299900765 19.493 0.53681 16.837 16.612 17.149 -2.6564 187 45 5 0 0 0 0.6606 1 10444 10444 3.8763 0.55669 1 922020000 16796 12674 11525 11736 19970 19970 0.010245202637634065 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.5331115722656 3 358.533202 1072.57778 -0.50744 -0.00018193 -0.80201 -0.00028755 -1.3095 -0.00046948 358.53315841922586 29.749 0.35824 29.749 29.572 29.931 0 49 21 4 0 0 0 0.0099157 1 15371 15371 66.683 30.288 1 22122000 16797 8080 11526 11737 19971 19971 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.294921875 2 537.296165 1072.57778 NaN NaN NaN NaN NaN NaN NaN 29.757 1 29.757 29.257 30.257 0 0 0 0 0.10661 1 15427 15427 41.956 16.556 1 16798 8080 11526 11737 19972 19972 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.5332336425781 3 358.533202 1072.57778 0.62356 0.00022357 -0.41898 -0.00015022 0.20458 7.3348E-05 358.53312242247324 29.744 0.47263 29.664 29.422 29.895 -0.080429 68 21 4 0 0 0 0.0074582 2 15321 15321;15424 92.201 42.459 1 145080000 16799 8080 11526 11737 19973;19974 19973 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7988891601562 2 537.296165 1072.57778 0.54726 0.00029404 -0.94291 -0.00050662 -0.39565 -0.00021258 537.7970327078455 29.732 0.35479 29.651 29.46 29.815 -0.080429 22 16 2 0 0 0 0.01958 1 15351 15351 63.961 25.785 1 47494000 16800 8080 11526 11737 19975 19975 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5327758789062 3 358.533202 1072.57778 -0.063532 -2.2778E-05 -0.2675 -9.5908E-05 -0.33103 -0.00011869 358.5331531104073 29.478 0.34941 29.508 29.363 29.712 0.030106 50 17 4 0 0 0 0.0014462 2 15346 15346;15453 115.06 38.011 1 53127000 16801 8080 11526 11737 19976;19977 19976 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2950439453125 2 537.296165 1072.57778 0.031019 1.6666E-05 -0.27437 -0.00014742 -0.24335 -0.00013075 537.2955595272258 29.532 0.25852 29.562 29.415 29.674 0.030104 17 12 2 0 0 0 0.012668 1 15382 15382 72.968 36.462 1 12275000 16802 8080 11526 11737 19978 19978 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5342712402344 3 358.533202 1072.57778 1.1735 0.00042074 -0.046478 -1.6664E-05 1.127 0.00040408 358.5331568201401 32.917 0.6403 29.06 28.694 29.334 -3.8562 130 38 5 0 0 0 0.0074582 3 18649 18649;18783;18912 92.201 42.459 1 823780000 16803 8080 11526 11737 19979;19980;19981 19979 0.044390832859335205 GPREAFRQL 9 Unmodified _GPREAFRQL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2957763671875 2 537.296165 1072.57778 0.39009 0.00020959 0.33716 0.00018115 0.72725 0.00039075 537.2960631061692 32.96 0.55867 29.104 28.776 29.334 -3.8562 89 34 4 0 0 0 0.015688 2 18687 18687;18821 67.838 32.906 1 278050000 16804 8080 11526 11737 19982;19983 19982 0.044390832859335205 GPREALSRL 9 Unmodified _GPREALSRL_ 0 0 0 ENSG00000158691|ENST00000684592|ZSCAN12;nc|ENSG00000158691|O43309-2|ZSCAN12;ENST00000589630.1_1_18:32821039-32822911:+|nuORF;ENST00000482979.5_1_7:99621129-99621950:+|nuORF;nc|ENSG00000186812|Q8NF99-3|ZNF397;nc|ENSG00000186814|Q86W11-3|ZSCAN30;nc|ENSG00000186812|Q8NF99-2|ZNF397;ENSG00000235109|ENST00000344279|ZSCAN31;nc|ENSG00000103199|O60304-2|ZNF500;nc|ENSG00000197062|Q16670|ZSCAN26;ENSG00000197062|ENST00000421553|ZSCAN26;ENSG00000103199|ENST00000219478|ZNF500;ENSG00000186814|ENST00000333206|ZSCAN30;ENSG00000189298|ENST00000252211|ZKSCAN3;ENSG00000187626|ENST00000377294|ZKSCAN4;ENSG00000106261|ENST00000324306|ZKSCAN1;ENSG00000186812|ENST00000330501|ZNF397;ENSG00000006194|ENST00000219069|ZNF263;ENSG00000197279|ENST00000683778|ZNF165 ENSG00000158691|ENST00000684592|ZSCAN12;ENSG00000186812|ENST00000330501|ZNF397;ENSG00000006194|ENST00000219069|ZNF263;ENSG00000197279|ENST00000683778|ZNF165 ENSG00000158691|ENST00000684592|ZSCAN12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.791015625 2 499.790715 997.566878 0.90331 0.00045147 -1.9156 -0.00095739 -1.0123 -0.00050593 499.7902544158479 34.472 0.32973 30.376 30.269 30.599 -4.0951 27 19 2 0 0 0 0.047714 1 19918 19918 45.74 20.749 1 7627700 16805 6603;9508;330;9936 11527 11738 19984 19984 0.06799680911649375 GPREAVSGL 9 Unmodified _GPREAVSGL_ 0 0 0 nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF nc|ENSG00000121775|Q9GZU3-4|TMEM39B nc|ENSG00000121775|Q9GZU3-4|TMEM39B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2432556152344 2 443.243067 884.47158 -0.19569 -8.6737E-05 -0.40281 -0.00017854 -0.5985 -0.00026528 443.24291869674386 29.062 0.27842 29.062 28.883 29.161 0 33 13 3 0 0 0 0.036857 1 15005 15005 51.63 5.6089 1 4800700 16806 3600 11528 11739 19985 19985 0.024723277206248895 GPREAVSGL 9 Unmodified _GPREAVSGL_ 0 0 0 nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;nc|ENSG00000121775|Q9GZU3-3|TMEM39B;ENST00000476968.5_1_1:32540652-32561345:+|nuORF nc|ENSG00000121775|Q9GZU3-4|TMEM39B nc|ENSG00000121775|Q9GZU3-4|TMEM39B MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2434387207031 2 443.243067 884.47158 0.7312 0.0003241 -0.91063 -0.00040363 -0.17942 -7.9529E-05 443.2423779469827 32.813 0.32859 28.957 28.732 29.061 -3.8562 32 17 2 0 0 0 0.085319 1 18688 18688 36.506 3.7205 1 19026000 16807 3600 11528 11739 19986 19986 0.024723277206248895 GPREEIVYL 9 Unmodified _GPREEIVYL_ 0 0 0 ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000474352.5_1_1:151341776-151342064:-|nuORF;ENST00000493560.5_1_1:151341776-151345168:-|nuORF;nc|ENSG00000143416|Q13228-3|SELENBP1 ENSG00000143416|ENST00000368868|SELENBP1 ENSG00000143416|ENST00000368868|SELENBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2930297851562 2 538.292756 1074.57096 0.47924 0.00025797 -0.85978 -0.00046281 -0.38054 -0.00020484 538.2923759481323 53.08 0.57717 53.08 52.75 53.327 0 44 26 3 0 0 0 0.30202 1 29415 29415 17.113 1.8644 1 3921100 16808 5509 11529 11740 19987 19987 0.036657256147236694 GPREQPLPSTL 11 Unmodified _GPREQPLPSTL_ 0 0 0 ENST00000164227.9_1_19:45263103-45263223:+|nuORF ENST00000164227.9_1_19:45263103-45263223:+|nuORF ENST00000164227.9_1_19:45263103-45263223:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8878479003906 3 398.887422 1193.64044 0.86052 0.00034325 -2.6009 -0.0010374 -1.7403 -0.0006942 398.88769993258677 18.606 0.37124 15.984 15.768 16.139 -2.6215 93 39 3 0 0 0 0.57006 1 9827 9827 12.856 0.61529 1 7927800 16809 10978 11530 11741 19988 19988 0.05136184563457391 GPRGMGTAL 9 Unmodified _GPRGMGTAL_ 0 0 0 ENST00000546217.1_1_12:7079496-7079730:-|nuORF;ENST00000542294.1_1_12:7079357-7079730:-|nuORF;ENST00000544134.5_1_12:7077746-7079730:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF;nc|ENSG00000215021|Q99623-2|PHB2;ENSG00000215021|ENST00000535923|PHB2 ENST00000546217.1_1_12:7079496-7079730:-|nuORF ENST00000546217.1_1_12:7079496-7079730:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2262878417969 2 430.226362 858.438172 NaN NaN NaN NaN NaN NaN NaN 31.889 1 28.193 27.693 28.693 -3.6958 0 0 0 0.20153 1 18106 18106 30.637 2.4633 1 16810 10516 11531 11742 19989 19989 0.003290026770628174 GPRLPWTRL 9 Unmodified _GPRLPWTRL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8850402832031 3 365.885576 1094.6349 -0.34979 -0.00012798 0.0081963 2.9989E-06 -0.34159 -0.00012498 365.88552284388646 53.553 0.22751 53.49 53.361 53.589 -0.063423 20 12 2 0 0 0 0.067618 1 29025 29025 40.725 25.476 1 8394500 16811 3468 11532 11743 19990 19990 0.0913655056231164 GPRLPWTRL 9 Unmodified _GPRLPWTRL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2200622558594 3 365.885576 1094.6349 1.4016 0.00051284 -0.54513 -0.00019945 0.85652 0.00031339 365.8853668988936 80.82 0.65204 74.644 74.408 75.06 -6.1757 48 36 2 0 0 0 0.040337 3 53063 52931;53063;53190 49.742 30.116 1 22931000 16812 3468 11532 11743 19991;19992;19993 19992 0.0913655056231164 GPRLPWTRL 9 Unmodified _GPRLPWTRL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MSMS AL20221201_MKP_PDAC_01 4 365.8863525390625 3 365.885576 1094.6349 NaN NaN NaN NaN NaN NaN NaN 58.235 1 52.207 51.707 52.707 -6.0275 0 0 0 0.24069 1 37306 37306 28.234 12.085 1 16813 3468 11532 11743 19994 19994 0.0913655056231164 GPRLTVKAL 9 Unmodified _GPRLTVKAL_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.8093872070312 2 477.808377 953.6022 0.93949 0.0004489 0.035282 1.6858E-05 0.97478 0.00046576 477.8084226393208 39.319 0.30817 34.868 34.734 35.042 -4.4509 39 18 3 0 0 0 0.044011 1 23303 23303 47.749 13.347 1 13814000 16814 1567 11533 11744 19995 19995 0.12354343439449167 GPRNAQIQAL 10 Unmodified _GPRNAQIQAL_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.302001953125 2 534.301447 1066.58834 -0.12003 -6.413E-05 1.4286 0.00076328 1.3085 0.00069915 534.3020267337487 32.206 0.21503 32.077 31.961 32.176 -0.12915 12 7 2 0 0 0 0.54684 1 16763 16763 13.906 4.5586 1 1094200 16815 8122 11534 11745 19996 19996 0.05771065940348308 GPRNVLLFL 9 Unmodified _GPRNVLLFL_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.81689453125 2 514.816202 1027.61785 1.0224 0.00052634 1.0209 0.00052558 2.0433 0.0010519 514.8164456162565 82.832 0.33184 82.894 82.717 83.049 0.062004 31 12 3 0 0 0 0.070838 1 45812 45812 39.957 15.937 1 7048500 16816 1058 11535 11746 19997 19997 0.10514629956514909 GPRPAAIAV 9 Unmodified _GPRPAAIAV_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2584228515625 2 426.25852 850.502486 NaN NaN NaN NaN NaN NaN NaN 34.329 1 34.138 33.638 34.638 -0.19131 0 0 0 0.76439 1 17925 17925 7.2892 1.5288 1 16817 3297 11536 11747 19998 19998 0.07125525825506429 GPRPAAIAV 9 Unmodified _GPRPAAIAV_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2596130371094 2 426.25852 850.502486 1.1511 0.00049066 -0.14038 -5.9839E-05 1.0107 0.00043083 426.2585884268965 38.122 0.59268 33.754 33.419 34.012 -4.3689 102 35 4 0 0 0 0.095405 2 22341 22341;22465 34.102 10.559 1 79216000 16818 3297 11536 11747 19999;20000 19999 0.07125525825506429 GPRPAAIAV 9 Unmodified _GPRPAAIAV_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 426.25852 850.502486 -0.60493 -0.00025785 0.69324 0.0002955 0.088318 3.7646E-05 426.25881340766153 34.023 0.26721 34.023 33.888 34.156 0 0.1795 0.00030527 NaN 34.102 24 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8213600 16819 3297 11536 11747 0.07125525825506429 GPRPAAIAV 9 Unmodified _GPRPAAIAV_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 426.25852 850.502486 0.15971 6.8079E-05 0.46163 0.00019677 0.62134 0.00026485 426.2589119362879 33.893 0.20403 33.922 33.769 33.973 0.028934 0.078041 0.00010782 NaN 34.102 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1071700 16820 3297 11536 11747 0.07125525825506429 GPRPITQSEL 10 Unmodified _GPRPITQSEL_ 0 0 0 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 ENSG00000138629|ENST00000395081|UBL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3011474609375 2 549.301113 1096.58767 1.1707 0.00064307 -0.06093 -3.3469E-05 1.1098 0.0006096 549.3010916576866 37.384 0.27565 33.101 32.938 33.213 -4.2835 27 15 2 0 0 0 0.077785 1 21941 21941 51.63 7.7715 1 6606200 16821 5074 11537 11748 20001 20001 0.04324226500648365 GPRPSPWARL 10 Unmodified _GPRPSPWARL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5490417480469 3 379.548964 1135.62506 0.37896 0.00014383 0.28288 0.00010737 0.66184 0.0002512 379.5490454222268 40.151 0.37736 40.156 40.004 40.382 0.0050583 32 17 2 0 0 0 0.038363 2 21362 21362;21465 55.249 41.73 1 21890000 16822 4412 11538 11749 20002;20003 20002 0.06267362556923217 GPRPSPWARL 10 Unmodified _GPRPSPWARL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5496826171875 3 379.548964 1135.62506 1.1456 0.00043482 1.3113 0.00049772 2.457 0.00093254 379.5494187125389 43.631 0.51851 38.867 38.607 39.126 -4.7648 105 32 4 0 0 0 0.095098 3 26538 26406;26538;26686 47.732 34.213 1 71876000 16823 4412 11538 11749 20004;20005;20006 20005 0.06267362556923217 GPRPSPWARL 10 Unmodified _GPRPSPWARL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8194580078125 2 568.819807 1135.62506 0.80864 0.00045997 -0.38662 -0.00021991 0.42203 0.00024006 568.819553306153 43.565 0.40287 38.8 38.663 39.066 -4.7648 44 24 2 0 0 0 0.17253 1 26493 26493 37.075 5.8063 1 16864000 16824 4412 11538 11749 20007 20007 0.06267362556923217 GPRSHRDPFF 10 Unmodified _GPRSHRDPFF_ 0 0 0 nc|ENSG00000143575|O00165-4|HAX1;ENST00000531435.5_1_1:154245130-154246130:+|nuORF;nc|ENSG00000143575|O00165-6|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1 nc|ENSG00000143575|O00165-4|HAX1 nc|ENSG00000143575|O00165-4|HAX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2081298828125 3 405.872106 1214.59449 1.7372 0.00070509 1.8285 0.00074216 3.5658 0.0014472 405.8729870245478 47.655 0.49573 42.421 42.104 42.599 -5.2339 43 28 2 0 0 0 0.64628 1 29673 29673 5.0475 1.9753 1 13968000 16825 5529 11539 11750 20008 20008 -0.004224158281203927 GPRSPLKGL 9 Unmodified _GPRSPLKGL_ 0 0 0 ENST00000545336.5_1_12:28343432-28378732:+|nuORF;ENST00000539107.5_2_12:28343363-28410142:+|nuORF;ENST00000544780.5_1_12:28343432-28351961:+|nuORF ENST00000545336.5_1_12:28343432-28378732:+|nuORF ENST00000545336.5_1_12:28343432-28378732:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7857360839844 2 462.784902 923.55525 0.48723 0.00022548 0.25678 0.00011883 0.74401 0.00034432 462.7850418790557 26.552 0.21123 23.601 23.502 23.713 -2.9511 17 10 2 0 0 0 0.05447 1 14655 14655 43.858 3.9086 1 6642700 16826 15015 11540 11751 20009 20009 0.09041483888336188 GPRSSLRVL 9 Unmodified _GPRSSLRVL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.8012084960938 2 492.801083 983.587613 0.21898 0.00010792 0.71185 0.0003508 0.93083 0.00045872 492.8014182512456 29.977 0.42507 30.007 29.734 30.159 0.030106 40 16 4 0 0 0 0.012668 1 15647 15647 72.968 34.994 1 21667000 16827 9729 11541 11752 20010 20010 0.09516271291329303 GPRSSLRVL 9 Unmodified _GPRSSLRVL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.8008117675781 2 492.801083 983.587613 0.96325 0.00047469 -0.47674 -0.00023494 0.48651 0.00023975 492.80082570078633 33.403 0.56167 29.418 29.152 29.714 -3.9853 79 32 3 0 0 0 0.078314 3 19066 19066;19181;19299 38.176 20.041 1 190660000 16828 9729 11541 11752 20011;20012;20013 20011 0.09516271291329303 GPRTAALGLL 10 Unmodified _GPRTAALGLL_ 0 0 0 nc|ENSG00000117906|Q14257-2|RCN2;ENSG00000117906|ENST00000394885|RCN2 nc|ENSG00000117906|Q14257-2|RCN2 nc|ENSG00000117906|Q14257-2|RCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2989807128906 2 484.798009 967.581465 0.88012 0.00042668 -0.98907 -0.0004795 -0.10895 -5.282E-05 484.79760475096117 57.093 0.34149 57.027 56.859 57.201 -0.066036 40 16 3 0 0 0 0.20195 1 31029 31029 33.445 4.9581 1 16797000 16829 3342 11542 11753 20014 20014 0.09637753059791976 GPRVTYHNI 9 Unmodified _GPRVTYHNI_ 0 0 0 REV__ENST00000272462.2_1_2:110842286-110842496:-|nuORF REV__ENST00000272462.2_1_2:110842286-110842496:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8582458496094 3 352.857686 1055.55123 1.1906 0.00042012 0.96147 0.00033926 2.1521 0.00075938 352.8580604350271 32.936 0.27545 29.08 28.854 29.129 -3.8562 28 15 2 0 0 0 0.12424 1 18737 18737 22.658 0 1 17464000 + 16830 25149 11543 11754 20015 20015 0.02567394394600342 GPSFAKLMTL 10 Unmodified _GPSFAKLMTL_ 0 0 0 REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7954711914062 2 532.794078 1063.5736 1.0802 0.00057551 2.3344 0.0012438 3.4146 0.0018193 532.7954919384395 30.702 0.24866 27.205 27.029 27.277 -3.497 16 11 2 0 0 0 0.17714 1 17332 17332 36.506 0.462 1 24227000 + 16831 25378 11544 11755 20016 20016 0.044358577480352324 GPSFAKLMTL 10 Unmodified _GPSFAKLMTL_ 0 0 0 REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.794078 1063.5736 0.26574 0.00014159 3.8185 0.0020345 4.0843 0.0021761 532.7961538030805 27.55 0.17366 27.578 27.488 27.661 0.028664 0.18651 0.00056878 NaN 36.506 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3804400 + 16832 25378 11544 11755 0.044358577480352324 GPSFAKLMTL 10 Unmodified _GPSFAKLMTL_ 0 0 0 REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF REV__ENST00000306336.5_2_2:85836002-85836071:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 532.794078 1063.5736 1.0802 0.00057551 2.3344 0.0012438 3.4146 0.0018193 532.7954919384395 30.702 0.24866 27.205 27.029 27.277 -3.497 -0.18651 -0.0010127 NaN 36.506 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 24227000 + 16833 25378 11544 11755 0.044358577480352324 GPSGGQLGLF 10 Unmodified _GPSGGQLGLF_ 0 0 0 REV__ENST00000466596.5_1_17:14204427-14204721:+|nuORF REV__ENST00000466596.5_1_17:14204427-14204721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.4851684570312 1 932.483608 931.476331 0.65384 0.0006097 0.20758 0.00019357 0.86142 0.00080326 932.4841354439443 50.744 0.26791 50.33 50.17 50.438 -0.41351 28 12 3 0 0 0 0.40136 1 27377 27377 21.537 1.0834 1 3632600 + 16834 27411 11545 11756 20017 20017 0.007852118633763894 GPSGPILAM 9 Oxidation (M) _GPSGPILAM(Oxidation (M))_ GPSGPILAM(1) GPSGPILAM(120) 0 0 1 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4384765625 1 858.438966 857.431689 0.24215 0.00020787 0.36912 0.00031687 0.61127 0.00052473 858.4391965908115 39.214 0.20495 39.214 39.077 39.282 0 12 9 2 0 0 0 0.0040993 1 20988 20988 120.86 64.316 1 882670 16835 563;2829 11546 11757 20018 20018 80 -0.0027293527430174436 GPSHCLPQQPY 11 Unmodified _GPSHCLPQQPY_ 0 0 0 REV__ENSG00000166268|ENST00000552032|MYRFL REV__ENSG00000166268|ENST00000552032|MYRFL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.0356750488281 3 409.525607 1225.55499 1.4144 0.00057923 -1.8306 -0.00074967 -0.41618 -0.00017043 409.8588811667011 35.795 0.23077 31.602 31.493 31.724 -4.1928 26 14 3 0 0 0 0.29698 1 20833 20833 4.4062 2.8139 1 6172400 + 16836 22100 11547 11758 20019 20019 -0.048763038938432146 GPSLDEDDEEL 11 Unmodified _GPSLDEDDEEL_ 0 0 0 REV__ENSG00000131116|ENST00000300811|ZNF428 REV__ENSG00000131116|ENST00000300811|ZNF428 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8365783691406 3 406.838462 1217.49356 NaN NaN NaN NaN NaN NaN NaN 38.204 1 38.204 37.704 38.704 0 0 0 0 0.93224 1 20389 20389 2.6312 0 1 + 16837 19775 11548 11759 20020 20020 -0.10649001902788768 GPSQAKIEY 9 Unmodified _GPSQAKIEY_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7545166015625 2 496.756007 991.497461 -0.48318 -0.00024003 -1.6383 -0.00081384 -2.1215 -0.0010539 496.7550441450743 27.322 0.27527 27.322 27.232 27.508 0 17 13 2 0 0 0 0.0025703 1 14069 14069 128.93 57.01 1 4854200 16838 16209;15895 11549 11760 20021 20021 0.0013717717222334613 GPSQAKIEY 9 Unmodified _GPSQAKIEY_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7579345703125 2 496.756007 991.497461 1.1396 0.0005661 0.66392 0.0003298 1.8035 0.00089591 496.7572967109199 30.496 0.21419 26.999 26.856 27.07 -3.497 19 10 2 0 0 0 0.011739 1 17206 17206 75.571 31.712 1 23066000 16839 16209;15895 11549 11760 20022 20022 0.0013717717222334613 GPSRQGQL 8 Unmodified _GPSRQGQL_ 0 0 0 ENST00000571508.5_1_17:7225105-7226282:-|nuORF ENST00000571508.5_1_17:7225105-7226282:-|nuORF ENST00000571508.5_1_17:7225105-7226282:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7276306152344 2 421.727584 841.440614 NaN NaN NaN NaN NaN NaN NaN 17.743 1 17.743 17.243 18.243 0 0 0 0 0.93587 1 8768 8768 13.508 1.8676 1 16840 15486 11550 11761 20023 20023 0.013551744063761362 GPSSLIVHF 9 Unmodified _GPSSLIVHF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7642822265625 2 478.763635 955.512717 0.4422 0.00021171 0.69041 0.00033054 1.1326 0.00054225 478.7639246035516 63.326 0.34975 62.84 62.642 62.992 -0.48617 42 15 3 0 0 0 0.016494 2 34477 34477;34580 67.035 36.811 1 6169700 16841 2385 11551 11762 20024;20025 20024 0.03318088760090632 GPSSLIVHF 9 Unmodified _GPSSLIVHF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7642822265625 2 478.763635 955.512717 0.33347 0.00015966 0.44849 0.00021472 0.78196 0.00037437 478.76390858202166 62.912 0.31413 62.891 62.735 63.049 -0.021614 25 15 2 0 0 0 0.010712 1 34373 34373 78.445 40.294 1 6237200 16842 2385 11551 11762 20026 20026 0.03318088760090632 GPSSLIVHF 9 Unmodified _GPSSLIVHF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7640686035156 2 478.763635 955.512717 0.73048 0.00034973 -0.78658 -0.00037659 -0.056101 -2.6859E-05 478.76339790201763 68.148 0.56272 61.973 61.769 62.332 -6.1757 51 33 2 0 0 0 0.0084408 2 44384 44384;44523 98.807 54.4 1 36053000 16843 2385 11551 11762 20027;20028 20027 0.03318088760090632 GPSSPTDGQAA 11 Unmodified _GPSSPTDGQAA_ 0 0 0 nc|ENSG00000120341|Q96JE7-2|SEC16B;ENSG00000120341|ENST00000308284|SEC16B;ENST00000466953.6_1_1:177929778-177937161:-|nuORF nc|ENSG00000120341|Q96JE7-2|SEC16B nc|ENSG00000120341|Q96JE7-2|SEC16B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2220458984375 2 494.222528 986.430503 NaN NaN NaN NaN NaN NaN NaN 62.447 1 62.447 61.947 62.947 0 0 0 0 0.86932 1 34830 34830 8.7454 0 1 16844 3513 11552 11763 20029 20029 -0.06325478109522464 GPSSRPPCR 9 Unmodified _GPSSRPPCR_ 0 0 0 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7407531738281 2 478.740168 955.465783 NaN NaN NaN NaN NaN NaN NaN 60.925 1 60.436 59.936 60.936 -0.48932 0 0 0 0.46757 1 33182 33182 16.942 1.0951 1 + 16845 27041 11553 11764 20030 20030 -0.013730940627056043 GPSTPGVY 8 Unmodified _GPSTPGVY_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1934509277344 2 389.192511 776.370469 NaN NaN NaN NaN NaN NaN NaN 20.649 1 20.649 20.149 21.149 0 0 0 0 0.97444 1 10401 10401 2.8892 0.31174 1 16846 4954 11554 11765 20031 20031 -0.0266612398208963 GPSVWYFPDAY 11 Unmodified _GPSVWYFPDAY_ 0 0 0 REV__nc|ENSG00000204655|Q16653-12|MOG REV__nc|ENSG00000204655|Q16653-12|MOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.295166015625 2 651.295496 1300.57644 0.32323 0.00021052 -0.77782 -0.00050659 -0.45459 -0.00029607 651.2950964234733 47.514 1.1117 47.514 46.98 48.092 0 101 52 4 0 0 0 0.46578 1 26027 26027 18.146 2.8979 1 5848500 + 16847 29909 11555 11766 20032 20032 -0.06182595593463702 GPTAVAALY 9 Unmodified _GPTAVAALY_ 0 0 0 REV__ENSG00000140406|ENST00000267984|TLNRD1 REV__ENSG00000140406|ENST00000267984|TLNRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.4671020507812 1 862.466895 861.459619 0.26669 0.00023001 -0.31025 -0.00026758 -0.043567 -3.7575E-05 862.4668116158429 58.067 0.21113 58.067 57.968 58.179 0 10 8 2 0 0 0 0.30562 1 32347 32347 16.942 2.3606 1 542500 + 16848 20470 11556 11767 20033 20033 0.023347109774135788 GPTAVAALY 9 Unmodified _GPTAVAALY_ 0 0 0 REV__ENSG00000140406|ENST00000267984|TLNRD1 REV__ENSG00000140406|ENST00000267984|TLNRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 862.466895 861.459619 0.26669 0.00023001 -0.31025 -0.00026758 -0.043567 -3.7575E-05 862.4668116158429 58.067 0.21113 58.067 57.968 58.179 0 0 0 NaN 16.942 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 542500 + 16849 20470 11556 11767 0.023347109774135788 GPTDTDEERL 10 Unmodified _GPTDTDEERL_ 0 0 0 REV__ENSG00000110237|ENST00000263674|ARHGEF17 REV__ENSG00000110237|ENST00000263674|ARHGEF17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1749572753906 3 378.175409 1131.5044 NaN NaN NaN NaN NaN NaN NaN 18.719 1 18.719 18.219 19.219 0 0 0 0 0.99248 1 9326 9326 0.62683 0.12087 1 + 16850 18698 11557 11768 20034 20034 -0.05609554737839062 GPTGRGVVEY 10 Unmodified _GPTGRGVVEY_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7666625976562 2 517.766906 1033.51926 NaN NaN NaN NaN NaN NaN NaN 28.31 1 28.31 27.81 28.81 0 0 0 0 0.36315 1 14617 14617 33.445 10.296 1 16851 1848 11558 11769 20035 20035 0.0038398192079966975 GPTGRGVVEY 10 Unmodified _GPTGRGVVEY_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20221201_MKP_PDAC_01 4 517.7670288085938 2 517.766906 1033.51926 NaN NaN NaN NaN NaN NaN NaN 31.947 1 28.252 27.752 28.752 -3.6958 0 0 0 0.19159 1 18145 18145 43.772 5.6212 1 16852 1848 11558 11769 20036 20036 0.0038398192079966975 GPTNSPPYLNA 11 Unmodified _GPTNSPPYLNA_ 0 0 0 REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1 REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.779052734375 2 565.77747 1129.54039 NaN NaN NaN NaN NaN NaN NaN 67.697 1 67.697 67.197 68.197 0 0 0 0 0.93669 1 37749 37749 4.897 1.3005 1 + 16853 20098 11559 11770 20037 20037 -0.019200527703105763 GPVAPAEARS 10 Unmodified _GPVAPAEARS_ 0 0 0 REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF REV__ENST00000371754.8_2_20:47894579-47894954:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2310791015625 2 477.753798 953.493044 -0.25175 -0.00012027 -0.70373 -0.00033621 -0.95548 -0.00045648 477.75384201072427 25.191 0.11145 25.191 25.128 25.239 0 6 5 2 0 0 0 0.22811 1 12888 12888 14.838 0.43289 1 459200 + 16854 26095 11560 11771 20038 20038 0.014437127493238222 GPVDKGHDVTF 11 Unmodified _GPVDKGHDVTF_ 0 0 0 ENSG00000107738|ENST00000394957|VSIR;ENST00000481568.2_1_10:73520406-73521697:-|nuORF ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.1967163085938 3 391.196256 1170.56694 -0.41623 -0.00016283 0.49283 0.00019279 0.076604 2.9967E-05 391.196509337286 29.132 0.17913 29.132 29.063 29.242 0 11 8 2 0 0 0 0.65108 1 15095 15095 4.4062 1.5629 1 2150500 16855 2513 11561 11772 20039 20039 -0.011523638790094992 GPVDKGHDVTF 11 Unmodified _GPVDKGHDVTF_ 0 0 0 ENSG00000107738|ENST00000394957|VSIR;ENST00000481568.2_1_10:73520406-73521697:-|nuORF ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.1970825195312 3 391.196256 1170.56694 0.98334 0.00038468 2.3972 0.00093778 3.3805 0.0013225 391.1971573289824 32.644 0.24678 28.788 28.715 28.961 -3.8562 20 12 2 0 0 0 0.42108 1 18639 18639 16.275 5.3756 1 5832500 16856 2513 11561 11772 20040 20040 -0.011523638790094992 GPVDLGPP 8 Unmodified _GPVDLGPP_ 0 0 0 REV__ENSG00000188153|ENST00000328300|COL4A5 REV__ENSG00000188153|ENST00000328300|COL4A5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 751.3316650390625 1 751.398481 750.391205 -0.033027 -2.4817E-05 0.37036 0.00027828 0.33733 0.00025347 751.3984878826153 64.209 0.27914 64.209 64.022 64.301 0 16 11 2 0 0 0 8.7369 1 35844 35844 14.582 5.2343 1 645780 + 16857 23691 11562 11773 20041 20041 0.006024663975722433 GPVEHVPVF 9 Unmodified _GPVEHVPVF_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7625732421875 2 490.763635 979.512717 0.23343 0.00011456 0.512 0.00025127 0.74543 0.00036583 490.76383153716677 52.714 0.32792 52.714 52.53 52.858 0 33 14 3 0 0 0 0.0094915 1 29134 29134 81.864 41.907 1 8160100 16858 683 11563 11774 20042 20042 0.02214088760104005 GPVEHVPVF 9 Unmodified _GPVEHVPVF_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7639465332031 2 490.763635 979.512717 0.5398 0.00026491 -0.32912 -0.00016152 0.21068 0.00010339 490.76336317650373 53.195 0.30952 52.743 52.613 52.922 -0.45173 37 15 3 0 0 0 0.023164 1 28742 28742 60.39 35.716 1 5337500 16859 683 11563 11774 20043 20043 0.02214088760104005 GPVEHVPVF 9 Unmodified _GPVEHVPVF_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7639465332031 2 490.763635 979.512717 1.3336 0.00065447 -1.2887 -0.00063243 0.044914 2.2042E-05 490.7634845549154 58.487 0.43438 52.412 52.2 52.635 -6.0745 53 23 3 0 0 0 0.03327 1 37432 37432 53.576 26.692 1 38189000 16860 683 11563 11774 20044 20044 0.02214088760104005 GPVEKLIVY 9 Unmodified _GPVEKLIVY_ 0 0 0 ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6 ENSG00000112701|ENST00000447266|SENP6 ENSG00000112701|ENST00000447266|SENP6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3036193847656 2 509.302593 1016.59063 -0.046868 -2.387E-05 1.1959 0.00060906 1.149 0.00058519 509.30361478423737 55.01 0.40101 54.533 54.27 54.671 -0.47798 38 19 3 0 0 0 0.14225 1 29699 29699 30.637 12.502 1 4732900 16861 2912 11564 11775 20045 20045 0.08300101625468415 GPVGAELAF 9 Unmodified _GPVGAELAF_ 0 0 0 nc|ENSG00000111837|P20794-3|MAK;nc|ENSG00000111837|P20794|MAK;ENSG00000111837|ENST00000354489|MAK nc|ENSG00000111837|P20794-3|MAK nc|ENSG00000111837|P20794-3|MAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.4522705078125 1 860.451245 859.443968 0.20923 0.00018003 0.011415 9.8221E-06 0.22064 0.00018985 860.4516162253848 66.25 0.35489 66.25 66.091 66.446 0 24 15 2 0 0 0 0.027803 1 36929 36929 56.541 9.6204 1 1914300 16862 2834 11565 11776 20046 20046 0.008624244603652187 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2411804199219 2 453.239993 904.465432 0.73839 0.00033467 0.22766 0.00010318 0.96605 0.00043785 453.2400509729136 47.46 0.3919 47.46 47.231 47.623 0 55 17 4 0 0 0 0.0081063 2 25901 25901;26014 93.883 12.019 1 59468000 16863 9884 11566 11777 20047;20048 20047 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 905.4720458984375 1 905.472709 904.465432 0.097419 8.821E-05 -0.0010402 -9.419E-07 0.096378 8.7268E-05 905.4726254170085 47.774 0.24958 47.421 47.266 47.516 -0.3526 17 11 2 0 0 0 0.013472 1 25604 25604 70.716 0 1 4394700 16864 9884 11566 11777 20049 20049 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.240478515625 2 453.239993 904.465432 0.50456 0.00022869 0.66183 0.00029997 1.1664 0.00052866 453.24003596565694 47.756 0.22852 47.403 47.287 47.516 -0.3526 25 10 3 0 0 0 0.0094915 1 25608 25608 81.864 11.149 1 5644600 16865 9884 11566 11777 20050 20050 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.2406311035156 2 453.239993 904.465432 1.0191 0.00046187 -0.045401 -2.0578E-05 0.97365 0.0004413 453.2401391679565 47.471 0.17774 47.432 47.34 47.518 -0.038643 11 7 2 0 0 0 0.027803 1 25595 25595 56.541 31.867 1 1338700 16866 9884 11566 11777 20051 20051 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 905.4724731445312 1 905.472709 904.465432 0.90112 0.00081594 -0.094401 -8.5478E-05 0.80672 0.00073046 905.4725439819342 55.011 0.50933 49.09 48.808 49.317 -5.9211 83 31 3 0 0 0 0.012148 3 34797 34797;34927;35065 74.423 20.847 1 154300000 16867 9884 11566 11777 20052;20053;20054 20052 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2381896972656 2 453.239993 904.465432 1.1615 0.00052646 -0.16111 -7.3023E-05 1.0004 0.00045344 453.2399056158216 54.994 0.58703 49.073 48.779 49.366 -5.9211 106 36 4 0 0 0 0.0081063 3 34803 34803;34942;35079 101.72 33.494 1 219530000 16868 9884 11566 11777 20055;20056;20057 20055 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 905.472709 904.465432 0.36182 0.00032762 0.54737 0.00049563 0.90919 0.00082325 905.4730892298264 47.461 0.35059 47.461 47.25 47.601 0 0.018658 0.00016428 NaN 70.716 48 15 4 NaN NaN NaN NaN 0 NaN NaN 0 49663000 16869 9884 11566 11777 0.009378094890848843 GPVGVNVTY 9 Unmodified _GPVGVNVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 905.472709 904.465432 0.9298 0.00084191 -0.47378 -0.000429 0.45602 0.00041291 905.4726327089603 47.484 0.19881 47.445 47.319 47.518 -0.038643 0.0028106 -0.00076034 NaN 70.716 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1038300 16870 9884 11566 11777 0.009378094890848843 GPVIQDQGN 9 Unmodified _GPVIQDQGN_ 0 0 0 REV__nc|ENSG00000073578|P31040-2|SDHA REV__nc|ENSG00000073578|P31040-2|SDHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2312622070312 2 464.230156 926.445759 0.89822 0.00041698 1.1314 0.00052525 2.0297 0.00094223 464.2306492602179 47.449 0.38769 47.449 47.171 47.558 0 37 17 3 0 0 0 0.14 1 25976 25976 29.082 7.3349 1 9883900 + 16871 17537 11567 11778 20058 20058 -0.02040566521668552 GPVIQDQGN 9 Unmodified _GPVIQDQGN_ 0 0 0 REV__nc|ENSG00000073578|P31040-2|SDHA REV__nc|ENSG00000073578|P31040-2|SDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2302551269531 2 464.230156 926.445759 1.0326 0.00047935 0.030574 1.4193E-05 1.0631 0.00049354 464.23000680125676 55.027 0.39783 49.106 48.843 49.241 -5.9211 34 24 2 0 0 0 0.14 1 34889 34889 29.082 6.3453 1 28500000 + 16872 17537 11567 11778 20059 20059 -0.02040566521668552 GPVLNTHTY 9 Unmodified _GPVLNTHTY_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2537841796875 2 501.256174 1000.49779 NaN NaN NaN NaN NaN NaN NaN 31.253 1 31.253 30.753 31.753 0 0 0 0 0.020219 1 16272 16272 78.149 49.663 1 16873 8908 11568 11779 20060 20060 -0.002434031079133092 GPVLREPTF 9 Unmodified _GPVLREPTF_ 0 0 0 nc|ENSG00000146094|Q7L591-2|DOK3;nc|ENSG00000146094|Q7L591-4|DOK3;nc|ENSG00000146094|Q7L591-3|DOK3 nc|ENSG00000146094|Q7L591-2|DOK3 nc|ENSG00000146094|Q7L591-2|DOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.281494140625 2 508.282192 1014.54983 -0.28852 -0.00014665 0.12039 6.1191E-05 -0.16813 -8.5456E-05 508.2824118346 55.838 0.28731 55.36 55.152 55.44 -0.47798 30 13 3 0 0 0 0.070838 1 30303 30303 39.957 7.6518 1 1851100 16874 16254 11569 11780 20061 20061 0.043137603058426066 GPVPGAVVY 9 Unmodified _GPVPGAVVY_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4738159179688 1 858.47198 857.464704 0.43133 0.00037029 0.30958 0.00026577 0.74091 0.00063605 858.4724908432232 50.885 0.20272 50.885 50.793 50.996 0 16 12 2 0 0 0 0.085487 1 28074 28074 36.466 8.2929 1 2445000 16875 2420 11570 11781 20062 20062 0.03027014840040465 GPVPGAVVY 9 Unmodified _GPVPGAVVY_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 858.4730834960938 1 858.47198 857.464704 1.2716 0.0010917 -0.86286 -0.00074074 0.40877 0.00035092 858.4724565171136 58.716 0.34127 52.642 52.457 52.798 -6.0745 23 18 2 0 0 0 0.016115 1 37605 37605 67.413 21.663 1 7798300 16876 2420 11570 11781 20063 20063 0.03027014840040465 GPVPTRIVI 9 Unmodified _GPVPTRIVI_ 0 0 0 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.3047180175781 2 476.302927 950.591301 NaN NaN NaN NaN NaN NaN NaN 52.592 1 52.533 52.033 53.033 -0.058918 0 0 0 0.41346 1 28496 28496 19.257 5.3509 1 + 16877 22427 11571 11782 20064 20064 0.11402941065182404 GPVQTPALTI 10 Unmodified _GPVQTPALTI_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7898864746094 2 498.78985 995.565146 0.17077 8.5177E-05 0.0624 3.1125E-05 0.23317 0.0001163 498.78985987093665 68.782 0.32501 68.301 68.118 68.443 -0.48071 35 14 3 0 0 0 0.20962 1 37662 37662 32.786 2.1491 1 3872200 16878 16039 11572 11783 20065 20065 0.06718627103020935 GPVQTPALTI 10 Unmodified _GPVQTPALTI_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 498.78985 995.565146 0.44875 0.00022383 1.494 0.00074518 1.9427 0.00096902 498.7907740650628 68.346 0.19074 68.346 68.224 68.415 0 0.022126 0.0012741 NaN 32.786 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 259080 16879 16039 11572 11783 0.06718627103020935 GPVSLFNTDFK 11 Unmodified _GPVSLFNTDFK_ 0 0 0 REV__ENSG00000184571|ENST00000616349|PIWIL3 REV__ENSG00000184571|ENST00000616349|PIWIL3 MSMS AL20221201_MKP_PDAC_01 4 408.8724975585938 3 408.880156 1223.61864 NaN NaN NaN NaN NaN NaN NaN 16.623 1 14.066 13.566 14.566 -2.557 0 0 0 0.93224 1 8625 8625 4.7159 0 1 + 16880 23425 11573 11784 20066 20066 0.015773798148757123 GPWKITIY 8 Unmodified _GPWKITIY_ 0 0 0 nc|ENSG00000108255|P05813-2|CRYBA1;ENSG00000108255|ENST00000225387|CRYBA1 nc|ENSG00000108255|P05813-2|CRYBA1 nc|ENSG00000108255|P05813-2|CRYBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2748718261719 2 489.276378 976.538203 0.0059096 2.8915E-06 -2.2381 -0.001095 -2.2322 -0.0010922 489.27526149284216 36.644 0.30114 36.666 36.515 36.816 0.021545 24 13 3 0 0 0 0.31612 1 19408 19408 53.576 15.424 1 4570100 16881 2553 11574 11785 20067 20067 0.04899563282504005 GPWRRSRASC 10 Unmodified _GPWRRSRASC_ 0 0 0 ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENST00000565504.5_1_16:88927163-88927364:+|nuORF ENST00000565504.5_1_16:88927163-88927364:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5341186523438 3 392.533208 1174.57779 NaN NaN NaN NaN NaN NaN NaN 28.576 1 28.605 28.105 29.105 0.029564 0 0 0 0.99091 1 14881 14881 0.69767 0.24315 1 16882 15408 11575 11786 20068 20068 -0.0025123998568687966 GPYDEFQRRHF 11 Unmodified _GPYDEFQRRHF_ 0 0 0 ENSG00000119938|ENST00000238994|PPP1R3C ENSG00000119938|ENST00000238994|PPP1R3C ENSG00000119938|ENST00000238994|PPP1R3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 726.3419799804688 2 726.344375 1450.6742 NaN NaN NaN NaN NaN NaN NaN 95.603 1 95.603 95.103 96.103 0 0 0 0 0.94184 1 52842 52842 1.1933 0.12188 1 16883 3482 11576 11787 20069 20069 -0.03311393944795782 GPYDGFYLSY 10 Unmodified _GPYDGFYLSY_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2600708007812 2 591.261122 1180.50769 0.22861 0.00013517 -0.17841 -0.00010549 0.050199 2.9681E-05 591.2610120129902 84.575 0.31145 78.399 78.206 78.517 -6.1757 30 17 2 0 0 0 0.0093317 1 55581 55581 88.904 68.45 1 21696000 16884 887 11577 11788 20070 20070 -0.0753425989319112 GPYEVEVTY 9 Unmodified _GPYEVEVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7481689453125 2 528.747847 1055.48114 0.11171 5.9065E-05 -1.202 -0.00063555 -1.0903 -0.00057649 528.747918572245 52.207 0.58098 52.207 51.908 52.489 0 68 25 4 0 0 0 0.0094915 2 28875 28875;28978 81.864 53.377 1 12854000 16885 9884 11578 11789 20071;20072 20071 -0.044379487844935284 GPYEVEVTY 9 Unmodified _GPYEVEVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.747802734375 2 528.747847 1055.48114 0.97493 0.00051549 -0.19317 -0.00010214 0.78176 0.00041335 528.7476819732116 60.262 0.4408 54.147 53.983 54.424 -6.1147 50 22 3 0 0 0 0.023164 2 38853 38725;38853 60.39 43.447 1 55110000 16886 9884 11578 11789 20073;20074 20074 -0.044379487844935284 GPYEVEVTY 9 Unmodified _GPYEVEVTY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 1056.585205078125 1 1056.48842 1055.48114 0.76897 0.00081241 -0.37704 -0.00039834 0.39193 0.00041407 1056.4882414139424 60.216 0.26671 54.102 54.041 54.307 -6.1147 21 13 2 0 0 0 0.0090851 1 38765 38765 85.357 37.011 1 17440000 16887 9884 11578 11789 20075 20075 -0.044379487844935284 GPYGGGGQYF 10 Unmodified _GPYGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7574768066406 2 501.719424 1001.4243 0.98985 0.00049663 -0.15194 -7.6231E-05 0.83791 0.0004204 501.7196832189188 54.796 0.28419 48.931 48.835 49.119 -5.8653 31 17 2 0 0 0 0.11501 1 34778 34778 46.921 29.979 1 14061000 16888 74 11579 11790 20076 20076 -0.07635951550378195 GPYMKALEY 9 Oxidation (M) _GPYM(Oxidation (M))KALEY_ GPYM(1)KALEY GPYM(44)KALEY 0 0 1 nc|ENSG00000107902|Q9H008-2|LHPP;ENSG00000107902|ENST00000368842|LHPP nc|ENSG00000107902|Q9H008-2|LHPP nc|ENSG00000107902|Q9H008-2|LHPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.258544921875 2 544.260068 1086.50558 -0.48007 -0.00026128 0.32885 0.00017898 -0.15122 -8.2305E-05 544.2599836253142 34.524 0.36681 34.524 34.269 34.636 0 35 18 2 0 0 0 0.05447 1 18227 18227 43.858 22.112 1 5657900 16889 2530 11580 11791 20077 20077 435 -0.034210119026511165 GPYMKALEY 9 Oxidation (M) _GPYM(Oxidation (M))KALEY_ GPYM(1)KALEY GPYM(54)KALEY 0 0 1 nc|ENSG00000107902|Q9H008-2|LHPP;ENSG00000107902|ENST00000368842|LHPP nc|ENSG00000107902|Q9H008-2|LHPP nc|ENSG00000107902|Q9H008-2|LHPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2591552734375 2 544.260068 1086.50558 -0.34132 -0.00018577 0.42517 0.0002314 0.08385 4.5636E-05 544.2602160409372 35.136 0.28736 35.136 34.977 35.265 0 27 14 2 0 0 0 0.032796 1 18512 18512 53.833 33.379 1 6853800 16890 2530 11580 11791 20078 20078 435 -0.034210119026511165 GPYMKALEY 9 Oxidation (M) _GPYM(Oxidation (M))KALEY_ 0 0 1 nc|ENSG00000107902|Q9H008-2|LHPP;ENSG00000107902|ENST00000368842|LHPP nc|ENSG00000107902|Q9H008-2|LHPP nc|ENSG00000107902|Q9H008-2|LHPP MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 544.260068 1086.50558 0.53175 0.00028941 -0.16823 -9.1562E-05 0.36352 0.00019785 544.2597859704487 39.626 0.1425 35.175 35.107 35.25 -4.4509 0.019374 -0.00054117 NaN 53.833 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6476700 16891 2530 11580 11791 435 -0.034210119026511165 GPYPHLHWRQ 10 Unmodified _GPYPHLHWRQ_ 0 0 0 REV__ENST00000339861.8_3_9:92017874-92020319:-|nuORF REV__ENST00000339861.8_3_9:92017874-92020319:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 65.693 1 65.693 65.193 66.193 0 0 0 0 1.0019 1 36639 36639 0.15932 0.01943 1 + 16892 25685 11581 11792 20079 20079 0.008538634428759906 GQADCYRGF 9 Unmodified _GQADCYRGF_ 0 0 0 ENST00000489304.5_1_20:44751363-44751780:+|nuORF ENST00000489304.5_1_20:44751363-44751780:+|nuORF ENST00000489304.5_1_20:44751363-44751780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7171630859375 2 508.716359 1015.41816 0.35437 0.00018028 0.63182 0.00032142 0.98619 0.00050169 508.7170609550366 86.932 0.4977 86.932 86.725 87.223 0 123 32 7 0 0 0 0.54444 1 48194 48194 4.756 2.1785 1 3600400 16893 14236 11582 11793 20080 20080 -0.08892793053553305 GQADCYRGF 9 Unmodified _GQADCYRGF_ 0 0 0 ENST00000489304.5_1_20:44751363-44751780:+|nuORF ENST00000489304.5_1_20:44751363-44751780:+|nuORF ENST00000489304.5_1_20:44751363-44751780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7183532714844 2 508.716359 1015.41816 0.19017 9.6743E-05 1.1696 0.000595 1.3598 0.00069174 508.7169558746092 87.384 0.45492 86.88 86.681 87.136 -0.50423 34 19 2 0 0 0 0.54444 1 47754 47754 4.756 2.0208 1 3359500 16894 14236 11582 11793 20081 20081 -0.08892793053553305 GQAFYEMASFS 11 Unmodified _GQAFYEMASFS_ 0 0 0 ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38050440-38050886:-|nuORF ENSG00000187091|ENST00000334661|PLCD1 ENSG00000187091|ENST00000334661|PLCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1782531738281 3 413.177985 1236.51212 -0.61117 -0.00025252 1.7945 0.00074146 1.1834 0.00048894 413.1787281948407 34.967 0.17141 34.967 34.882 35.053 0 14 8 2 0 0 0 0.70705 1 18478 18478 3.5927 0.52041 1 2614800 16895 9535 11583 11794 20082 20082 -0.09667118741936065 GQAKVQQGV 9 Unmodified _GQAKVQQGV_ 0 0 0 ENST00000574210.5_1_17:2597327-2598221:-|nuORF ENST00000574210.5_1_17:2597327-2598221:-|nuORF ENST00000574210.5_1_17:2597327-2598221:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7568969726562 2 457.756341 913.498129 0.10671 4.8846E-05 0.35397 0.00016203 0.46068 0.00021088 457.75651739858984 22.65 0.30959 22.65 22.465 22.775 0 38 14 3 0 0 0 0.2143 1 11587 11587 21.747 0 1 7682300 16896 15508 11584 11795 20083 20083 0.03792016611964755 GQATPPPPPGK 11 Unmodified _GQATPPPPPGK_ 0 0 0 REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2868041992188 2 523.785099 1045.55564 -0.21662 -0.00011346 -0.35073 -0.00018371 -0.56735 -0.00029717 523.7848283838302 16.536 0.10519 16.536 16.502 16.607 0 50 30 2 0 0 0 0.65108 1 8064 8064 8.7454 0.83525 1 623560 + 16897 24903 11585 11796 20084 20084 0.03468858817518594 GQCADSRCDFY 11 Unmodified _GQCADSRCDFY_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000023055 REV__CON__ENSEMBL:ENSBTAP00000023055 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.7398681640625 2 632.739705 1263.46486 0.54469 0.00034464 -0.030444 -1.9263E-05 0.51424 0.00032538 632.7399196756303 49.701 0.29826 49.701 49.536 49.834 0 32 13 3 0 0 0 0.71618 1 27338 27338 2.7352 0.89096 1 7547200 + + 16898 16826 11586 11797 20085 20085 -0.15633721284575586 GQCNFRFHI 9 Unmodified _GQCNFRFHI_ 0 0 0 nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM nc|ENSG00000198910|P32004-3|L1CAM nc|ENSG00000198910|P32004-3|L1CAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2068786621094 3 374.515154 1120.52363 0.41018 0.00015362 -1.5993 -0.00059897 -1.1891 -0.00044535 374.5142155762573 59.025 0.1228 58.964 58.88 59.003 -0.060719 6 5 2 0 0 0 0.21819 1 32174 32174 1.0715 0 1 878070 16899 10193 11587 11798 20086 20086 -0.03180832137263678 GQCRLPGV 8 Unmodified _GQCRLPGV_ 0 0 0 REV__ENSG00000174469|ENST00000361727|CNTNAP2 REV__ENSG00000174469|ENST00000361727|CNTNAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2193298339844 2 415.22108 828.427607 -0.43067 -0.00017882 -2.2269 -0.00092466 -2.6576 -0.0011035 415.22014293624153 44.664 0.19713 44.664 44.552 44.749 0 19 10 2 0 0 0 0.80311 1 24281 24281 4.756 1.8668 1 11586000 + 16900 22792 11588 11799 20087 20087 0.006530200226279703 GQCRLPGV 8 Unmodified _GQCRLPGV_ 0 0 0 REV__ENSG00000174469|ENST00000361727|CNTNAP2 REV__ENSG00000174469|ENST00000361727|CNTNAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.220458984375 2 415.22108 828.427607 -0.13081 -5.4314E-05 -2.2666 -0.00094115 -2.3974 -0.00099546 415.2201426156647 44.877 0.16084 44.561 44.507 44.668 -0.31585 11 8 2 0 0 0 0.80311 1 23966 23966 4.756 1.8668 1 9350500 + 16901 22792 11588 11799 20088 20088 0.006530200226279703 GQCRLPGV 8 Unmodified _GQCRLPGV_ 0 0 0 REV__ENSG00000174469|ENST00000361727|CNTNAP2 REV__ENSG00000174469|ENST00000361727|CNTNAP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 415.22108 828.427607 -0.43067 -0.00017882 -2.2269 -0.00092466 -2.6576 -0.0011035 415.22014293624153 44.664 0.19713 44.664 44.552 44.749 0 0.074562 -0.00018507 NaN 4.756 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 11586000 + 16902 22792 11588 11799 0.006530200226279703 GQCRLPGV 8 Unmodified _GQCRLPGV_ 0 0 0 REV__ENSG00000174469|ENST00000361727|CNTNAP2 REV__ENSG00000174469|ENST00000361727|CNTNAP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 415.22108 828.427607 -0.13081 -5.4314E-05 -2.2666 -0.00094115 -2.3974 -0.00099546 415.2201426156647 44.877 0.16084 44.561 44.507 44.668 -0.31585 -0.028593 -0.00021806 NaN 4.756 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 9350500 + 16903 22792 11588 11799 0.006530200226279703 GQCRLPGV 8 Unmodified _GQCRLPGV_ 0 0 0 REV__ENSG00000174469|ENST00000361727|CNTNAP2 REV__ENSG00000174469|ENST00000361727|CNTNAP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 415.22108 828.427607 -0.20663 -8.5798E-05 -1.8849 -0.00078267 -2.0916 -0.00086846 415.22020561471027 44.566 0.33239 44.544 44.386 44.718 -0.022064 -0.045969 9.8912E-05 NaN 4.756 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 60566000 + 16904 22792 11588 11799 0.006530200226279703 GQDDTLIFI 9 Unmodified _GQDDTLIFI_ 0 0 0 REV__ENSG00000183876|ENST00000328668|ARSI REV__ENSG00000183876|ENST00000328668|ARSI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2639770507812 2 511.263665 1020.51278 0.50138 0.00025634 0.029886 1.528E-05 0.53126 0.00027162 511.263576213365 74.593 0.4794 74.593 74.41 74.89 0 60 21 4 0 0 0 0.05447 1 41544 41544 43.858 3.901 1 13047000 + 16905 23385 11589 11800 20089 20089 0.003340439694284214 GQDHCSVEYY 10 Unmodified _GQDHCSVEYY_ 0 0 0 REV__nc|ENSG00000079785|Q92499-3|DDX1 REV__nc|ENSG00000079785|Q92499-3|DDX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.6207885742188 2 600.734945 1199.45534 -0.71353 -0.00042865 3.4256 0.0020579 2.712 0.0016292 600.7374727738062 31.911 0.18267 31.911 31.84 32.023 0 11 8 2 0 0 0 0.23862 1 16637 16637 3.9444 0.66309 1 608820 + 16906 17653 11590 11801 20090 20090 -0.13641166298430107 GQDYRQSTF 9 Unmodified _GQDYRQSTF_ 0 0 0 REV__ENSG00000183067|ENST00000380588|IGSF5 REV__ENSG00000183067|ENST00000380588|IGSF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2509155273438 2 551.25162 1100.48869 0.39244 0.00021633 -0.99241 -0.00054707 -0.59998 -0.00033074 551.2507421161306 85.505 0.26413 85.505 85.34 85.604 0 15 10 2 0 0 0 0.39863 1 47384 47384 12.532 7.7755 1 343080 + 16907 23317 11591 11802 20091 20091 -0.05753796464250627 GQEGSYVDLI 10 Unmodified _GQEGSYVDLI_ 0 0 0 REV__nc|ENSG00000105967|O14948-3|TFEC REV__nc|ENSG00000105967|O14948-3|TFEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7657470703125 2 540.764029 1079.5135 NaN NaN NaN NaN NaN NaN NaN 72.825 1 72.825 72.325 73.325 0 0 0 0 0.97592 1 40548 40548 3.2813 0.70383 1 + 16908 18476 11592 11803 20092 20092 -0.023071613815318415 GQELRSQEE 9 Unmodified _GQELRSQEE_ 0 0 0 REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1 REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7949829101562 2 538.25436 1074.49417 0.42919 0.00023101 -1.1279 -0.00060711 -0.69874 -0.0003761 538.2538999841537 62.766 0.22289 62.28 62.162 62.385 -0.48617 18 10 2 0 0 0 0.17718 1 34204 34204 20.454 1.1966 1 4251100 + 16909 20943 11593 11804 20093 20093 -0.040101176724192555 GQEPEVPL 8 Unmodified _GQEPEVPL_ 0 0 0 REV__ENST00000470890.1_1_1:27681884-27683265:-|nuORF REV__ENST00000470890.1_1_1:27681884-27683265:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.4434814453125 1 868.441074 867.433798 0.098321 8.5386E-05 0.03672 3.1889E-05 0.13504 0.00011728 868.4411703224224 72.21 0.27447 72.21 72.032 72.306 0 22 12 2 0 0 0 0.72664 1 40258 40258 14.838 2.3067 1 1817700 + 16910 20592 11594 11805 20094 20094 -0.005221832648544478 GQEVVKYNE 9 Unmodified _GQEVVKYNE_ 0 0 0 REV__ENST00000568805.5_1_16:20810381-20812539:-|nuORF REV__ENST00000568805.5_1_16:20810381-20812539:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.784912109375 2 533.264196 1064.51384 0.3702 0.00019741 -4.2558 -0.0022695 -3.8856 -0.0020721 533.7634115817353 35.977 0.1785 35.977 35.896 36.074 0 14 8 2 0 0 0 0.20358 1 19036 19036 10.074 1.4806 1 2592800 + 16911 28952 11595 11806 20095 20095 -0.015837416616705013 GQFAVVKKC 9 Unmodified _GQFAVVKKC_ 0 0 0 ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1;ENST00000472344.1_1_9:90113992-90254278:+|nuORF;ENST00000469067.5_1_9:90113992-90265069:+|nuORF ENSG00000196730|ENST00000408954|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2703857421875 2 490.273312 978.532072 NaN NaN NaN NaN NaN NaN NaN 72.133 1 72.172 71.672 72.672 0.039024 0 0 0 0.46757 1 39718 39718 16.942 4.4107 1 16912 9865 11596 11807 20096 20096 0.041947217793449454 GQFDRDEYF 9 Unmodified _GQFDRDEYF_ 0 0 0 REV__ENSG00000168582|ENST00000304502|CRYGA REV__ENSG00000168582|ENST00000304502|CRYGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7509765625 2 588.751453 1175.48835 0.28657 0.00016872 -0.48078 -0.00028306 -0.1942 -0.00011434 588.7511314652123 48 0.28194 48 47.831 48.112 0 27 13 3 0 0 0 0.41742 1 26271 26271 11.64 2.2572 1 5960700 + 16913 22324 11597 11808 20097 20097 -0.09237216184101271 GQFDRDEYF 9 Unmodified _GQFDRDEYF_ 0 0 0 REV__ENSG00000168582|ENST00000304502|CRYGA REV__ENSG00000168582|ENST00000304502|CRYGA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.751453 1175.48835 0.28657 0.00016872 -0.48078 -0.00028306 -0.1942 -0.00011434 588.7511314652123 48 0.28194 48 47.831 48.112 0 -0.039282 -0.00049318 NaN 11.64 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5960700 + 16914 22324 11597 11808 -0.09237216184101271 GQFDRDEYF 9 Unmodified _GQFDRDEYF_ 0 0 0 REV__ENSG00000168582|ENST00000304502|CRYGA REV__ENSG00000168582|ENST00000304502|CRYGA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.751453 1175.48835 0.37283 0.0002195 1.4143 0.00083268 1.7871 0.0010522 588.7512730759636 48.451 0.14013 48.079 47.983 48.123 -0.37172 0.039282 0.0017383 NaN 11.64 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1137800 + 16915 22324 11597 11808 -0.09237216184101271 GQFEKRLDA 9 Unmodified _GQFEKRLDA_ 0 0 0 REV__nc|ENSG00000111879|Q8NB25-4|FAM184A REV__nc|ENSG00000111879|Q8NB25-4|FAM184A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.813232421875 2 532.28018 1062.54581 0.27878 0.00014839 -0.89726 -0.00047759 -0.61848 -0.0003292 532.2796731808999 78.063 0.2868 78.116 77.94 78.226 0.052452 18 11 2 0 0 0 0.20139 1 43137 43137 6.7232 0 1 1444100 + 16916 18775 11598 11809 20098 20098 0.01703670812139535 GQFHEQRLFE 10 Unmodified _GQFHEQRLFE_ 0 0 0 REV__ENSG00000135114|ENST00000257570|OASL REV__ENSG00000135114|ENST00000257570|OASL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 645.8433837890625 2 645.814919 1289.61528 1.3743 0.00088752 -1.3931 -0.00089969 -0.018845 -1.217E-05 646.3154062401331 97.417 0.16391 91.241 91.186 91.349 -6.1757 13 8 2 0 0 0 0.21977 1 64555 64555 22.736 1.1993 1 6547800 + 16917 20039 11599 11810 20099 20099 -0.017938702391120387 GQFLGHSK 8 Unmodified _GQFLGHSK_ 0 0 0 REV__ENST00000285279.9_1_7:55539450-55539720:-|nuORF REV__ENST00000285279.9_1_7:55539450-55539720:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2326354980469 2 437.232502 872.450451 1.198 0.00052382 1.2385 0.00054152 2.4366 0.0010653 437.2328829668783 46.405 0.30167 46.371 46.246 46.548 -0.033417 37 14 3 0 0 0 0.80447 1 24926 24926 3.9444 3.9444 1 12238000 + 16918 25216 11600 11811 20100 20100 0.009123624117592044 GQFYAFSNFYY 11 Unmodified _GQFYAFSNFYY_ 0 0 0 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 703.8057250976562 2 703.806228 1405.5979 NaN NaN NaN NaN NaN NaN NaN 43.382 1 43.072 42.572 43.572 -0.31039 0 0 0 0.69464 1 23078 23078 17.113 0 1 16919 9702 11601 11812 20101 20101 -0.08867210564767447 GQGAAKRK 8 Unmodified _GQGAAKRK_ 0 0 0 REV__ENST00000491275.1_1_X:80374261-80377048:-|nuORF REV__ENST00000491275.1_1_X:80374261-80377048:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2474365234375 2 408.245944 814.477334 NaN NaN NaN NaN NaN NaN NaN 10.075 1 10.092 9.5924 10.592 0.017581 0 0 0 0.97444 1 4988 4988 0.69038 0 1 + 16920 23995 11602 11813 20102 20102 0.06267471022943027 GQGEKWRFF 9 Unmodified _GQGEKWRFF_ 0 0 0 REV__ENST00000264560.11_1_19:746795-747209:+|nuORF REV__ENST00000264560.11_1_19:746795-747209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7897338867188 2 577.790715 1153.56688 0.09281 5.3625E-05 0.2821 0.00016299 0.37491 0.00021662 577.7910536650438 70.477 0.25588 70.477 70.333 70.589 0 18 10 2 0 0 0 0.54444 1 39232 39232 4.756 0 1 730280 + 16921 25076 11603 11814 20103 20103 -0.0037631908835464856 GQGEPGQRVAL 11 Unmodified _GQGEPGQRVAL_ 0 0 0 REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 556.2966918945312 2 556.296362 1110.57817 NaN NaN NaN NaN NaN NaN NaN 24.644 1 21.761 21.261 22.261 -2.8831 0 0 0 0.58065 1 13432 13432 21.537 1.0834 1 + 16922 22245 11604 11815 20104 20104 0.027304582151373324 GQGGLCPL 8 Unmodified _GQGGLCPL_ 0 0 0 ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 372.6878967285156 2 372.689081 743.36361 NaN NaN NaN NaN NaN NaN NaN 29.36 1 26.058 25.558 26.558 -3.3016 0 0 0 0.97444 1 16484 16484 2.8892 0 1 16923 15731 11605 11816 20105 20105 -0.018337601343318966 GQGHPQARPL 10 Unmodified _GQGHPQARPL_ 0 0 0 ENST00000418388.5_1_9:139008829-139010481:-|nuORF ENST00000418388.5_1_9:139008829-139010481:-|nuORF ENST00000418388.5_1_9:139008829-139010481:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1934814453125 3 354.193068 1059.55738 -0.063052 -2.2332E-05 1.4129 0.00050045 1.3499 0.00047812 354.1935159123316 15.989 0.85343 15.994 15.662 16.515 0.0050564 116 70 3 0 0 0 0.71042 1 8205 8205 1.7423 0.54893 1 2118100 16924 13069 11606 11817 20106 20106 0.029979126261423517 GQGKPYVFDRV 11 Unmodified _GQGKPYVFDRV_ 0 0 0 ENSG00000168280|ENST00000435030|KIF5C ENSG00000168280|ENST00000435030|KIF5C ENSG00000168280|ENST00000435030|KIF5C MSMS AL20221201_MKP_PDAC_01 4 633.3348388671875 2 633.335487 1264.65642 NaN NaN NaN NaN NaN NaN NaN 44.328 1 39.476 38.976 39.976 -4.852 0 0 0 0.71476 1 27050 27050 16.149 3.1066 1 16925 7740 11607 11818 20107 20107 0.03467890800357054 GQGVQLKESDF 11 Unmodified _GQGVQLKESDF_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3016357421875 2 604.30131 1206.58807 -0.15888 -9.6011E-05 1.0918 0.0006598 0.93296 0.00056379 604.3019578479568 54.073 0.33805 54.006 53.824 54.162 -0.066936 25 16 2 0 0 0 0.63851 1 29358 29358 9.3831 2.0939 1 1068000 + 16926 20974 11608 11819 20108 20108 -0.006963985701531783 GQGVQLKESDF 11 Unmodified _GQGVQLKESDF_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 604.30131 1206.58807 -0.15888 -9.6011E-05 1.0918 0.0006598 0.93296 0.00056379 604.3019578479568 54.073 0.33805 54.006 53.824 54.162 -0.066936 0 0 NaN 9.3831 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1068000 + 16927 20974 11608 11819 -0.006963985701531783 GQHSFHRRHL 10 Unmodified _GQHSFHRRHL_ 0 0 0 REV__ENST00000380152.7_1_13:32972494-32972584:+|nuORF REV__ENST00000380152.7_1_13:32972494-32972584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.5592651367188 3 425.558633 1273.65407 NaN NaN NaN NaN NaN NaN NaN 19.183 1 19.206 18.706 19.706 0.023106 0 0 0 1.0024 1 9659 9659 0.13989 0 1 + 16928 26307 11609 11820 20109 20109 0.02818899905946637 GQHSSFAPF 9 Unmodified _GQHSSFAPF_ 0 0 0 REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF REV__ENST00000601658.5_1_2:149634897-149646240:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7578430175781 2 489.227417 976.44028 0.36771 0.00017989 -1.637 -0.00080084 -1.2692 -0.00062095 489.2265015356786 67.851 0.32401 67.851 67.719 68.043 0 23 15 2 0 0 0 0.20727 1 37886 37886 7.9102 1.5561 1 1446500 + 16929 29257 11610 11821 20110 20110 -0.04888245313475181 GQIDAVWS 8 Unmodified _GQIDAVWS_ 0 0 0 REV__ENSG00000160999|ENST00000444095|SH2B2 REV__ENSG00000160999|ENST00000444095|SH2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2165222167969 2 438.216517 874.418482 0.32173 0.00014099 -1.1327 -0.00049635 -0.81093 -0.00035536 438.2160581779415 66.108 0.28078 66.108 65.959 66.239 0 19 13 2 0 0 0 0.74163 1 36836 36836 13.508 0 1 1372600 + 16930 21579 11611 11822 20111 20111 -0.02375050062050832 GQIEVVPEV 9 Unmodified _GQIEVVPEV_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2665405273438 2 485.266207 968.517862 0.52535 0.00025493 -0.66724 -0.00032379 -0.14189 -6.8855E-05 485.26578328759325 59.728 0.36985 59.728 59.532 59.902 0 44 16 4 0 0 0 0.009483 2 33267 33267;33380 81.89 28.057 1 12247000 16931 3374 11612 11823 20112;20113 20112 0.032343478320512986 GQIEVVPEV 9 Unmodified _GQIEVVPEV_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.5249633789062 1 969.525138 968.517862 0.4212 0.00040836 -1.4645 -0.0014199 -1.0433 -0.0010115 969.5237816818934 59.776 0.23657 59.776 59.602 59.839 0 16 10 2 0 0 0 0.028475 1 33280 33280 56.177 10.477 1 1896600 16932 3374 11612 11823 20114 20114 0.032343478320512986 GQIEVVPEV 9 Unmodified _GQIEVVPEV_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7692260742188 2 485.266207 968.517862 0.63422 0.00030776 1.0848 0.00052642 1.719 0.00083419 485.26592599211443 67.757 0.46878 61.582 61.368 61.837 -6.1757 40 26 2 0 0 0 0.020973 1 44193 44193 62.573 16.873 1 20861000 16933 3374 11612 11823 20115 20115 0.032343478320512986 GQISEVVVV 9 Unmodified _GQISEVVVV_ 0 0 0 nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP nc|ENSG00000099622|Q14011|CIRBP nc|ENSG00000099622|Q14011|CIRBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2693481445312 2 465.26875 928.522947 0.61584 0.00028653 0.28218 0.00013129 0.89802 0.00041782 465.26891605907196 58.516 0.31373 58.516 58.34 58.654 0 19 12 2 0 0 0 0.30562 1 32570 32570 16.942 0 1 932080 16934 1701 11613 11824 20116 20116 0.05582651694669494 GQIYRVCK 8 Unmodified _GQIYRVCK_ 0 0 0 REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2 REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7651672363281 2 483.763112 965.511671 NaN NaN NaN NaN NaN NaN NaN 33.416 1 33.416 32.916 33.916 0 0 0 0 0.69365 1 17526 17526 28.487 3.813 1 + 16935 20967 11614 11825 20117 20117 0.02753551119531039 GQIYSQEKF 9 Unmodified _GQIYSQEKF_ 0 0 0 REV__ENST00000504986.5_1_4:41961059-41961209:+|nuORF REV__ENST00000504986.5_1_4:41961059-41961209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2518920898438 2 550.274564 1098.53457 0.4846 0.00026666 2.9979 0.0016497 3.4825 0.0019163 550.2765763446268 68.801 0.30046 68.801 68.634 68.934 0 24 12 3 0 0 0 0.54444 1 38268 38268 4.756 0 1 1252500 + 16936 28062 11615 11826 20118 20118 -0.010751512820206699 GQKAKVRRPN 10 Unmodified _GQKAKVRRPN_ 0 0 0 ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.235107421875 3 385.235267 1152.68397 NaN NaN NaN NaN NaN NaN NaN 4.163 1 1.681 1.181 2.181 -2.482 0 0 0 0.9997 1 2111 2111 0.69767 0.55777 1 16937 14879 11616 11827 20119 20119 0.11373838851295659 GQKAKVRRPN 10 Unmodified _GQKAKVRRPN_ 0 0 0 ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.2357177734375 3 385.235267 1152.68397 NaN NaN NaN NaN NaN NaN NaN 5.4966 1 3.0147 2.5147 3.5147 -2.482 0 0 0 0.9997 1 2788 2788 0.69767 0.55777 1 16938 14879 11616 11827 20120 20120 0.11373838851295659 GQKAKVRRPN 10 Unmodified _GQKAKVRRPN_ 0 0 0 ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF ENST00000529844.5_2_11:71634518-71639632:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.2359008789062 3 385.235267 1152.68397 NaN NaN NaN NaN NaN NaN NaN 6.6787 1 4.1967 3.6967 4.6967 -2.482 0 0 0 0.9997 1 3375 3375 0.69767 0.55777 1 16939 14879 11616 11827 20121 20121 0.11373838851295659 GQLEGSRSYL 10 Unmodified _GQLEGSRSYL_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7988891601562 2 555.28292 1108.55129 0.23891 0.00013266 -4.1938 -0.0023288 -3.9549 -0.0021961 555.781983419182 56.433 0.22363 56.433 56.341 56.564 0 22 9 3 0 0 0 0.21977 1 31408 31408 17.113 0 1 7614800 + 16940 19800 11617 11828 20122 20122 0.001353496039428137 GQLLQFAQQ 9 Unmodified _GQLLQFAQQ_ 0 0 0 REV__ENSG00000255974|ENST00000301141|CYP2A6 REV__ENSG00000255974|ENST00000301141|CYP2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2803955078125 2 516.777274 1031.53999 0.48968 0.00025306 1.603 0.0008284 2.0927 0.0010815 517.2806839632656 66.978 0.57564 66.978 66.839 67.414 0 44 25 3 0 0 0 0.5029 1 37336 37336 7.2892 1.0834 1 790540 + 16941 24547 11618 11829 20123 20123 0.02548572300474916 GQLPLVAPY 9 Unmodified _GQLPLVAPY_ 0 0 0 REV__ENST00000592456.1_1_17:76167504-76168014:+|nuORF REV__ENST00000592456.1_1_17:76167504-76168014:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7381591796875 2 479.273835 956.533118 -0.45485 -0.000218 -1.2426 -0.00059556 -1.6975 -0.00081356 479.27357898586666 34.266 0.15509 34.266 34.19 34.345 0 13 7 2 0 0 0 0.19891 1 18046 18046 11.64 0 1 959410 + 16942 29177 11619 11830 20124 20124 0.053112594198864826 GQLSMQMAY 9 Unmodified _GQLSMQMAY_ 0 0 0 REV__ENST00000470396.1_1_1:151238797-151239150:+|nuORF REV__ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2332153320312 2 514.73062 1027.44669 0.43754 0.00022522 0.12235 6.2977E-05 0.55989 0.00028819 514.7310410718578 51.598 0.38347 51.598 51.369 51.753 0 44 17 3 0 0 0 0.41742 1 28447 28447 11.64 0 1 10427000 + 16943 21476 11620 11831 20125 20125 -0.06593811468610511 GQLSMQMAY 9 Unmodified _GQLSMQMAY_ 0 0 0 REV__ENST00000470396.1_1_1:151238797-151239150:+|nuORF REV__ENST00000470396.1_1_1:151238797-151239150:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2332153320312 2 514.73062 1027.44669 0.43754 0.00022522 0.12235 6.2977E-05 0.55989 0.00028819 514.7310410718578 51.598 0.38347 51.598 51.369 51.753 0 44 17 3 0 0 0 0.19891 1 28447 28447 11.64 0 1 10427000 + 16944 21476 11620 11831 20126 20126 -0.06593811468610511 GQLTEELHE 9 Unmodified _GQLTEELHE_ 0 0 0 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2540893554688 2 528.253828 1054.4931 0.32752 0.00017302 1.0034 0.00053006 1.3309 0.00070308 528.2543623174777 72.11 0.52223 72.11 71.84 72.362 0 75 23 4 0 0 0 0.34999 1 40259 40259 14.838 2.5976 1 7407000 16945 5764 11621 11832 20127 20127 -0.03196332041329697 GQLVNFYPL 9 Unmodified _GQLVNFYPL_ 0 0 0 nc|ENSG00000215906|A8MY62|LACTBL1;ENSG00000215906|ENST00000426928|LACTBL1 nc|ENSG00000215906|A8MY62|LACTBL1 nc|ENSG00000215906|A8MY62|LACTBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7831420898438 2 525.784567 1049.55458 0.63717 0.00033501 -1.4483 -0.00076152 -0.81117 -0.0004265 525.7836819316836 62.236 0.36397 61.749 61.592 61.956 -0.48764 40 16 3 0 0 0 0.2143 1 34003 34003 21.747 5.8995 1 4073600 16946 10539 11622 11833 20128 20128 0.031786444485987886 GQMHEDSC 8 Unmodified _GQMHEDSC_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.5825805664062 2 453.657652 905.300751 0.3352 0.00015207 -0.78127 -0.00035443 -0.44606 -0.00020236 453.65760503480675 38.004 0.58009 38.021 37.634 38.214 0.01704 45 27 2 0 0 0 8.7369 1 20116 20116 2.5775 0.51773 1 2354700 + 16947 22751 11623 11834 20129 20129 -0.15568693984675974 GQNGTSFHGCI 11 Unmodified _GQNGTSFHGCI_ 0 0 0 ENST00000508541.1_1_4:20618510-20620629:+|nuORF;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2 ENST00000508541.1_1_4:20618510-20620629:+|nuORF ENST00000508541.1_1_4:20618510-20620629:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2500610351562 2 560.745647 1119.47674 0.96507 0.00054116 -3.2086 -0.0017992 -2.2435 -0.001258 560.740377496943 54.264 0.50196 54.264 54.051 54.553 0 79 22 5 0 0 0 0.6249 1 30142 30142 10.074 0.6908 1 24642000 16948 5670 11624 11835 20130 20130 -0.07821736479081665 GQNNYSCTQC 10 Unmodified _GQNNYSCTQC_ 0 0 0 nc|ENSG00000186272|P17021-3|ZNF17;ENST00000602050.1_1_19:57930944-57932846:+|nuORF;nc|ENSG00000186272|P17021|ZNF17;ENSG00000186272|ENST00000307658|ZNF17 nc|ENSG00000186272|P17021-3|ZNF17 nc|ENSG00000186272|P17021-3|ZNF17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.1397399902344 3 373.139424 1116.39644 0.53797 0.00020074 0.32538 0.00012141 0.86334 0.00032215 373.13921501999096 54.002 0.42491 54.002 53.797 54.222 0 32 19 2 0 0 0 0.71123 1 29967 29967 0.69767 0 1 3758000 16949 9465 11625 11836 20131 20131 -0.15709965864425612 GQNVFPTY 8 Unmodified _GQNVFPTY_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4469604492188 1 925.441409 924.434132 0.67775 0.00062722 -0.25618 -0.00023708 0.42157 0.00039014 925.4410965360564 56.527 0.65657 50.55 50.266 50.923 -5.9769 121 37 4 0 0 0 0.63229 1 36011 36011 23.148 1.4018 1 631110000 16950 3755 11626 11837 20132 20132 -0.031107635450098314 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2655639648438 2 551.266207 1100.51786 0.39395 0.00021717 -0.97727 -0.00053874 -0.58332 -0.00032157 551.2666624936032 81.566 0.53596 81.566 81.347 81.883 0 43 27 2 0 0 0 0.23158 1 45255 45255 20.454 7.9221 1 632220 16951 7210 11627 11838 20133 20133 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2667236328125 2 551.266207 1100.51786 0.71904 0.00039638 0.3905 0.00021527 1.1095 0.00061165 551.2664003247454 82.126 0.58144 81.631 81.313 81.895 -0.4952 39 22 2 0 0 0 0.094149 2 45007 44911;45007 34.402 11.665 1 3567200 16952 7210 11627 11838 20134;20135 20135 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7693481445312 2 551.266207 1100.51786 1.0647 0.00058695 0.4605 0.00025386 1.5252 0.00084081 551.266544866525 88.926 0.47127 82.75 82.551 83.022 -6.1757 55 26 3 0 0 0 0.06294 2 58617 58617;58741 41.84 19.103 1 22031000 16953 7210 11627 11838 20136;20137 20136 -0.02837652167977467 GQPEIFYTF 9 Unmodified _GQPEIFYTF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1101.52587890625 1 1101.52514 1100.51786 0.93149 0.0010261 -1.0185 -0.0011219 -0.086988 -9.5819E-05 1101.523851168992 88.927 0.28311 82.751 82.599 82.882 -6.1757 26 15 2 0 0 0 3.6865E-10 1 58677 58677 168.66 86.129 1 6719200 16954 7210 11627 11838 20138 20138 -0.02837652167977467 GQPESDNVEF 10 Unmodified _GQPESDNVEF_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.4967346191406 3 374.496371 1120.46728 0.64831 0.00024279 -1.8027 -0.00067509 -1.1543 -0.0004323 374.49651586641096 46.349 0.39256 46.349 46.108 46.501 0 55 18 4 0 0 0 0.67459 1 25282 25282 5.4027 0.10583 1 6037500 16955 7588 11628 11839 20139 20139 -0.08813226283609765 GQPESDNVEF 10 Unmodified _GQPESDNVEF_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2415771484375 2 561.240918 1120.46728 0.9421 0.00052874 -1.0324 -0.0005794 -0.090265 -5.066E-05 561.2409976659559 46.322 0.41475 46.322 46.108 46.523 0 61 19 4 0 0 0 0.23548 1 25364 25364 31.268 5.869 1 29936000 16956 7588 11628 11839 20140 20140 -0.08813226283609765 GQPFLSPCL 9 Unmodified _GQPFLSPCL_ 0 0 0 REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 480.7904968261719 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 101.99 1 95.816 95.316 96.316 -6.1757 0 0 0 0.3092 1 68462 68462 24.674 2.9272 1 + 16957 25922 11629 11840 20141 20141 -0.007929598659416115 GQPGKVPL 8 Unmodified _GQPGKVPL_ 0 0 0 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2394714355469 2 398.239796 794.465038 NaN NaN NaN NaN NaN NaN NaN 41.717 1 41.41 40.91 41.91 -0.30682 0 0 0 0.88073 1 22121 22121 19.439 0 1 + 16958 18189 11630 11841 20142 20142 0.05958434559909165 GQPNFSQDF 9 Unmodified _GQPNFSQDF_ 0 0 0 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.22802734375 2 520.227613 1038.44067 0.45544 0.00023693 0.75499 0.00039277 1.2104 0.0006297 520.2279017577262 82.935 0.45384 82.438 82.244 82.698 -0.49751 43 18 3 0 0 0 0.36964 1 45436 45436 13.906 1.6654 1 5967500 + 16959 17154 11631 11842 20143 20143 -0.07700870384292102 GQPQPLDTF 9 Unmodified _GQPQPLDTF_ 0 0 0 REV__ENST00000256383.8_1_14:67852590-67852770:+|nuORF REV__ENST00000256383.8_1_14:67852590-67852770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7488403320312 2 501.748182 1001.48181 1.0101 0.00050682 -0.13006 -6.5256E-05 0.88006 0.00044157 501.7480685392022 46.287 0.52077 46.287 46.044 46.565 0 63 24 3 0 0 0 0.10734 1 25233 25233 32.305 1.6689 1 7260900 + 16960 24918 11632 11843 20144 20144 -0.01887109344829696 GQQDRSDIY 9 Unmodified _GQQDRSDIY_ 0 0 0 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 nc|ENSG00000197050|Q8TAQ5-2|ZNF420 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2485961914062 2 541.249077 1080.4836 NaN NaN NaN NaN NaN NaN NaN 19.799 1 19.799 19.299 20.299 0 0 0 0 0.85029 1 9928 9928 1.4819 0 1 16961 16482 11633 11844 20145 20145 -0.0534210032685678 GQQGEDAC 8 Unmodified _GQQGEDAC_ 0 0 0 nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-2|LTK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK;ENSG00000171094|ENST00000389048|ALK nc|ENSG00000062524|P29376-5|LTK;ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.1500854492188 2 404.150517 806.286482 NaN NaN NaN NaN NaN NaN NaN 1.8913 1 1.8743 1.3743 2.3743 -0.017019 0 0 0 0.97444 1 971 971 0 0 1 16962 8059;16038 11634 11845 20146 20146 -0.12441023141320784 GQQIFTEYY 9 Unmodified _GQQIFTEYY_ 0 0 0 REV__nc|ENSG00000166886|Q15742-2|NAB2 REV__nc|ENSG00000166886|Q15742-2|NAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7666625976562 2 574.766571 1147.51859 0.22399 0.00012874 3.153 0.0018122 3.377 0.001941 574.7670708386644 56.506 0.18446 56.506 56.424 56.609 0 12 7 2 0 0 0 0.49272 1 31453 31453 7.9102 0.62092 1 689960 + 16963 22162 11635 11846 20147 20147 -0.049268575188989416 GQQLLVAY 8 Unmodified _GQQLLVAY_ 0 0 0 nc|ENSG00000145817|Q969M3-2|YIPF5;ENSG00000145817|ENST00000274496|YIPF5;ENSG00000177752|ENST00000415895|YIPF7 nc|ENSG00000145817|Q969M3-2|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 891.4923095703125 1 891.493444 890.486168 0.18649 0.00016626 0.78385 0.0006988 0.97034 0.00086505 891.4942914360848 69.429 0.33396 63.254 63.153 63.487 -6.1757 22 17 2 0 0 0 0.24071 1 45336 45336 63.563 6.0915 1 11653000 16964 5728 11636 11847 20148 20148 0.03654399868742075 GQQTNDQDES 10 Unmodified _GQQTNDQDES_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.4821166992188 3 374.482901 1120.42687 NaN NaN NaN NaN NaN NaN NaN 41.497 1 41.497 40.997 41.997 0 0 0 0 0.97556 1 22388 22388 3.3196 0 1 16965 7321 11637 11848 20149 20149 -0.12852192674040452 GQRAAMPA 8 Unmodified _GQRAAMPA_ 0 0 0 REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2047119140625 2 401.20543 800.396307 -0.29925 -0.00012006 -0.37117 -0.00014891 -0.67042 -0.00026898 401.20424859632067 41.419 0.45934 41.417 41.221 41.68 -0.0017891 53 21 3 0 0 0 0.78849 1 22098 22098 9.3474 4.1168 1 43355000 + 16966 28463 11638 11849 20150 20150 -0.011875530114707544 GQRAAMPA 8 Unmodified _GQRAAMPA_ 0 0 0 REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 401.20543 800.396307 -0.31902 -0.00012799 -2.2154 -0.00088883 -2.5344 -0.0010168 401.204169148216 41.678 0.18735 41.371 41.308 41.495 -0.30682 -0.0083256 -0.00080838 NaN 9.3474 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3634000 + 16967 28463 11638 11849 -0.011875530114707544 GQRAEARGI 9 Unmodified _GQRAEARGI_ 0 0 0 ENST00000593093.5_1_19:1273320-1273596:+|nuORF ENST00000593093.5_1_19:1273320-1273596:+|nuORF ENST00000593093.5_1_19:1273320-1273596:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7666320800781 2 479.264865 956.515176 1.0857 0.00052032 -0.58702 -0.00028134 0.49865 0.00023898 479.2683887144502 83.394 0.47401 77.218 76.985 77.459 -6.1757 84 24 5 0 0 0 0.19127 1 54848 54848 24.021 3.5669 1 30254000 16968 15730 11639 11850 20151 20151 0.03517937217748113 GQRIKQVKY 9 Unmodified _GQRIKQVKY_ 0 0 0 REV__nc|ENSG00000132182|Q8TEM1-2|NUP210 REV__nc|ENSG00000132182|Q8TEM1-2|NUP210 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8926696777344 3 373.892619 1118.65603 0.085223 3.1864E-05 0.58945 0.00022039 0.67467 0.00025226 373.8926907439481 20.324 0.22982 20.334 20.221 20.451 0.010551 33 13 4 0 0 0 0.2546 1 10355 10355 19.362 6.4893 1 3724400 + 16969 19833 11640 11851 20152 20152 0.10144515871184012 GQRLAWPS 8 Unmodified _GQRLAWPS_ 0 0 0 REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.746337890625 2 457.745776 913.477 0.30273 0.00013857 1.5524 0.00071059 1.8551 0.00084916 457.74628601069713 71.779 0.34925 71.779 71.574 71.923 0 37 15 3 0 0 0 0.80722 2 39931 39931;40031 2.3027 2.3027 1 2590600 + 16970 27160 11641 11852 20153;20154 20153 0.01680051303083019 GQRLAWPS 8 Unmodified _GQRLAWPS_ 0 0 0 REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7464294433594 2 457.745776 913.477 0.45644 0.00020893 1.616 0.00073974 2.0725 0.00094867 457.7464856315064 72.088 0.337 71.612 71.415 71.752 -0.47609 24 13 2 0 0 0 0.80722 1 39438 39438 2.3027 0 1 1523100 + 16971 27160 11641 11852 20155 20155 0.01680051303083019 GQRNQHVF 8 Unmodified _GQRNQHVF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2508239746094 2 493.251757 984.488962 0.15648 7.7184E-05 -0.35855 -0.00017686 -0.20207 -9.9672E-05 493.25149691154854 86.936 0.28613 86.936 86.779 87.065 0 25 17 2 0 0 0 0.78849 1 48114 48114 9.3474 5.403 1 719360 16972 1164 11642 11853 20156 20156 -0.0039033195372439877 GQRNQHVF 8 Unmodified _GQRNQHVF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2518310546875 2 493.251757 984.488962 0.66088 0.00032598 -0.86323 -0.00042579 -0.20235 -9.981E-05 493.2514296832328 87.425 0.37336 86.92 86.708 87.081 -0.50423 24 15 2 0 0 0 0.61462 1 47780 47780 24.674 16.764 1 883320 16973 1164 11642 11853 20157 20157 -0.0039033195372439877 GQRPKVSVKV 10 Unmodified _GQRPKVSVKV_ 0 0 0 REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3405151367188 2 549.343115 1096.67168 -0.58709 -0.00032251 -2.7886 -0.0015319 -3.3757 -0.0018544 549.3415855515523 102.9 0.14411 102.85 102.81 102.95 -0.047928 6 5 2 0 0 0 0.71276 1 57166 57166 1.4819 0.68827 1 1336700 + 16974 28024 11643 11854 20158 20158 0.1272080238820763 GQRPKVSVKV 10 Unmodified _GQRPKVSVKV_ 0 0 0 REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 549.343115 1096.67168 -0.58709 -0.00032251 -2.7886 -0.0015319 -3.3757 -0.0018544 549.3415855515523 102.9 0.14411 102.85 102.81 102.95 -0.047928 0 0 NaN 1.4819 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1336700 + 16975 28024 11643 11854 0.1272080238820763 GQRRRRKRWT 10 Unmodified _GQRRRRKRWT_ 0 0 0 ENST00000539106.5_2_19:18668724-18672912:+|nuORF ENST00000539106.5_2_19:18668724-18672912:+|nuORF ENST00000539106.5_2_19:18668724-18672912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 700.3212890625 2 700.416334 1398.81812 NaN NaN NaN NaN NaN NaN NaN 90.397 1 90.397 89.897 90.897 0 0 0 0 1.0024 1 50012 50012 0.40072 0 1 16976 15014 11644 11855 20159 20159 0.13465917396661098 GQRSDQKVI 9 Unmodified _GQRSDQKVI_ 0 0 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3;nc|ENSG00000177707|Q9NQS3-2|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7881469726562 2 515.78563 1029.55671 NaN NaN NaN NaN NaN NaN NaN 65.303 1 64.819 64.319 65.319 -0.48428 0 0 0 0.41346 1 35638 35638 19.257 2.1441 1 16977 16408 11645 11856 20160 20160 0.04311073186431713 GQRSRSVPEI 10 Unmodified _GQRSRSVPEI_ 0 0 0 REV__ENSG00000167193|ENST00000300574|CRK REV__ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8095703125 2 564.809636 1127.60472 0.45625 0.00025769 -0.22074 -0.00012468 0.23551 0.00013302 564.809540762388 52.885 0.4031 52.885 52.636 53.039 0 33 18 2 0 0 0 0.54684 1 29229 29229 13.906 0 1 3008700 + 16978 22190 11646 11857 20161 20161 0.04602147106470511 GQRWKFSF 8 Unmodified _GQRWKFSF_ 0 0 0 ENST00000424404.1_1_7:121947107-121947290:+|nuORF ENST00000424404.1_1_7:121947107-121947290:+|nuORF ENST00000424404.1_1_7:121947107-121947290:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2553100585938 2 528.274701 1054.53485 0.33284 0.00017583 2.1491 0.0011353 2.4819 0.0013111 528.2756177914091 72.108 0.36201 72.108 71.944 72.306 0 33 16 3 0 0 0 8.7369 1 40154 40154 14.582 2.0501 1 1167300 16979 13147 11647 11858 20162 20162 0.009763132285115717 GQSGAEIWERR 11 Unmodified _GQSGAEIWERR_ 0 0 0 ENST00000255174.2_1_20:42835616-42839424:-|nuORF ENST00000255174.2_1_20:42835616-42839424:-|nuORF ENST00000255174.2_1_20:42835616-42839424:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8228149414062 2 644.823275 1287.632 -0.66396 -0.00042814 -0.39832 -0.00025685 -1.0623 -0.00068498 644.8230325179201 26.646 0.50438 26.646 26.468 26.972 0 71 23 4 0 0 0 0.53952 2 13656 13656;13754 14.405 3.6059 1 19021000 16980 11172 11648 11859 20163;20164 20163 -0.00031369353155241697 GQSSVGLHQF 10 Unmodified _GQSSVGLHQF_ 0 0 0 REV__ENSG00000101442|ENST00000243903|ACTR5 REV__ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2659301757812 2 530.26453 1058.51451 -0.43296 -0.00022958 3.3634 0.0017835 2.9304 0.0015539 530.2659901429279 77.093 0.20404 76.611 76.517 76.721 -0.48219 13 8 2 0 0 0 0.6966 1 42204 42204 3.2813 0.39209 1 352540 + 16981 18174 11649 11860 20165 20165 -0.012409022219571852 GQTLISVLL 9 Unmodified _GQTLISVLL_ 0 0 0 ENST00000369126.5_1_1:150131725-150131821:+|nuORF ENST00000369126.5_1_1:150131725-150131821:+|nuORF ENST00000369126.5_1_1:150131725-150131821:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.294189453125 2 472.294768 942.574983 NaN NaN NaN NaN NaN NaN NaN 62.412 1 62.412 61.912 62.912 0 0 0 0 0.038824 1 34810 34810 62.573 14.824 1 16982 12297 11650 11861 20166 20166 0.10139815108436778 GQTLRCLEL 9 Unmodified _GQTLRCLEL_ 0 0 0 ENST00000316673.8_1_20:42984410-43034812:+|nuORF ENST00000316673.8_1_20:42984410-43034812:+|nuORF ENST00000316673.8_1_20:42984410-43034812:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.263427734375 2 516.778959 1031.54336 NaN NaN NaN NaN NaN NaN NaN 72.794 1 72.318 71.818 72.818 -0.47588 0 0 0 0.6306 1 39837 39837 11.64 3.047 1 16983 11740 11651 11862 20167 20167 0.028854990827994698 GQTMPVQYS 9 Unmodified _GQTMPVQYS_ 0 0 0 REV__ENST00000476052.1_1_3:35833836-35835447:+|nuORF REV__ENST00000476052.1_1_3:35833836-35835447:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7349853515625 2 505.734217 1009.45388 0.45944 0.00023235 -0.16848 -8.5204E-05 0.29096 0.00014715 505.73412710021984 36.485 0.47898 32.292 32.067 32.545 -4.1928 62 29 3 0 0 0 0.094149 1 21452 21452 34.402 3.7652 1 42434000 + 16984 22696 11652 11863 20168 20168 -0.05046755596549701 GQTVCKNKP 9 Unmodified _GQTVCKNKP_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2609252929688 2 487.758027 973.5015 1.3891 0.00067752 1.0344 0.00050453 2.4234 0.0011821 487.7581944513768 64.051 0.87484 57.875 57.405 58.28 -6.1757 112 46 3 0 0 0 0.2143 1 41247 41247 21.747 1.293 1 180130000 16985 418 11653 11864 20169 20169 0.01368943394300004 GQVGCDLSCSS 11 Unmodified _GQVGCDLSCSS_ 0 0 0 ENST00000564295.1_1_16:56692857-56693073:+|nuORF ENST00000564295.1_1_16:56692857-56693073:+|nuORF ENST00000564295.1_1_16:56692857-56693073:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.4764099121094 3 352.475925 1054.40594 0.50701 0.00017871 0.86733 0.00030571 1.3743 0.00048442 352.4762064304133 82.933 0.42811 82.436 82.244 82.672 -0.49751 34 17 3 0 0 0 0.69316 1 45382 45382 2.2527 0 1 2563200 16986 15381 11654 11865 20170 20170 -0.11908197578918589 GQVSLDQNY 9 Unmodified _GQVSLDQNY_ 0 0 0 REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2396240234375 2 512.240721 1022.46689 -0.37553 -0.00019236 0.04181 2.1417E-05 -0.33372 -0.00017094 512.2407341605993 30.677 0.30789 30.677 30.463 30.771 0 41 14 4 0 0 0 0.39863 1 15997 15997 12.532 1.7076 1 7660400 + 16987 29258 11655 11866 20171 20171 -0.04344601212812904 GQYNDDDDDD 10 Unmodified _GQYNDDDDDD_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.1870727539062 2 586.186537 1170.35852 0.29055 0.00017032 -0.77969 -0.00045704 -0.48914 -0.00028673 586.1860362716976 96.082 0.41363 95.778 95.561 95.974 -0.30472 47 22 3 0 0 0 0.72607 1 52422 52422 0 0 1 719830 16988 14119 11656 11867 20172 20172 -0.21984482044558717 GQYRAIAEPGY 11 Unmodified _GQYRAIAEPGY_ 0 0 0 REV__nc|ENSG00000136286|B0I1T2-4|MYO1G;REV__nc|ENSG00000136286|B0I1T2-2|MYO1G REV__nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8041381835938 2 612.80402 1223.59349 0.53453 0.00032756 -0.5899 -0.00036149 -0.05537 -3.3931E-05 612.8038002603664 52.049 0.23686 51.616 51.512 51.749 -0.43367 22 11 3 0 0 0 0.54321 1 28106 28106 13.042 13.042 1 4197400 + 16989 20155;27675 11657 11868 20173 20173 -0.009366749876789981 GRAHAFLWF 9 Unmodified _GRAHAFLWF_ 0 0 0 ENST00000581677.1_1_18:268240-268348:+|nuORF ENST00000581677.1_1_18:268240-268348:+|nuORF ENST00000581677.1_1_18:268240-268348:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7898559570312 2 552.790518 1103.56648 0.43933 0.00024286 -0.62795 -0.00034713 -0.18862 -0.00010427 552.7900373749052 85.985 0.27541 85.985 85.843 86.118 0 31 12 3 0 0 0 0.53666 1 47708 47708 5.2307 0 1 1424300 16990 15564 11658 11869 20174 20174 0.018843059824575903 GRAKAEPP 8 Unmodified _GRAKAEPP_ 0 0 0 REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2317199707031 2 413.232502 824.450451 NaN NaN NaN NaN NaN NaN NaN 22.088 1 22.088 21.588 22.588 0 0 0 0 0.97444 1 11223 11223 5.2307 0 1 + 16991 25750 11659 11870 20175 20175 0.031203624117551954 GRARTSSFAEP 11 Unmodified _GRARTSSFAEP_ 0 0 0 ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5372314453125 3 393.535271 1177.58398 1.1997 0.00047211 -0.26666 -0.00010494 0.93301 0.00036717 393.53503905910145 31.023 0.44618 27.526 27.175 27.621 -3.497 33 20 2 0 0 0 0.24216 1 17407 17407 19.144 1.2808 1 35270000 16992 2359 11660 11871 20176 20176 0.002295567268220111 GRARTSSFAEP 11 Unmodified _GRARTSSFAEP_ 0 0 0 ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A MSMS AL20221201_MKP_PDAC_01 4 393.5380554199219 3 393.535271 1177.58398 NaN NaN NaN NaN NaN NaN NaN 30.596 1 27.099 26.599 27.599 -3.497 0 0 0 0.24717 1 17285 17285 29.281 0 1 16993 2359 11660 11871 20177 20177 0.002295567268220111 GRDSSPYHPH 10 Unmodified _GRDSSPYHPH_ 0 0 0 ENST00000367537.7_2_1:183523118-183523304:+|nuORF ENST00000367537.7_2_1:183523118-183523304:+|nuORF ENST00000367537.7_2_1:183523118-183523304:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.8436279296875 3 384.844216 1151.51082 NaN NaN NaN NaN NaN NaN NaN 26.802 1 26.77 26.27 27.27 -0.031708 0 0 0 0.95639 1 13790 13790 5.4027 0 1 16994 12241 11661 11872 20178 20178 -0.0588757199579959 GRDYSKYYSI 10 Unmodified _GRDYSKYYSI_ 0 0 0 ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5 ENSG00000167916|ENST00000264651|KRT24 ENSG00000167916|ENST00000264651|KRT24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8736267089844 3 417.87166 1250.59315 1.0293 0.00043011 1.6373 0.00068417 2.6665 0.0011143 417.8727064869223 49.852 0.22353 49.803 49.683 49.907 -0.048824 18 10 3 0 0 0 0.71123 1 26998 26998 0.69767 0.07084 1 1019000 + 16995 194 11662 11873 20179 20179 -0.022120947075109143 GRFSFEVFRF 10 Unmodified _GRFSFEVFRF_ 0 0 0 ENSG00000170044|ENST00000466937|ZPLD1;nc|ENSG00000170044|Q8TCW7-2|ZPLD1 ENSG00000170044|ENST00000466937|ZPLD1 ENSG00000170044|ENST00000466937|ZPLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3344116210938 2 646.332747 1290.65094 0.27417 0.0001772 0.27015 0.0001746 0.54431 0.00035181 646.33262176145 93.12 0.49482 92.663 92.462 92.957 -0.45741 56 24 3 0 0 0 0.71276 1 51036 51036 1.4819 0.15237 1 986640 16996 7944 11663 11874 20180 20180 0.017242120085484203 GRFVICGYF 9 Unmodified _GRFVICGYF_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|77|1|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|77|1|anti-sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.2021789550781 3 354.51275 1060.51642 0.85184 0.00030199 1.1235 0.0003983 1.9753 0.00070029 354.51391702628325 23.397 0.22929 20.618 20.509 20.738 -2.7784 17 13 2 0 0 0 0.21367 1 12605 12605 2.7352 0.23671 1 1458200 + 16997 29425 11664 11875 20181 20181 -0.011415647376907145 GRGEATLHLC 10 Unmodified _GRGEATLHLC_ 0 0 0 ENST00000396862.1_1_16:3350967-3351225:-|nuORF ENST00000396862.1_1_16:3350967-3351225:-|nuORF ENST00000396862.1_1_16:3350967-3351225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8466796875 3 352.846681 1055.51821 0.59966 0.00021159 -0.023505 -8.2935E-06 0.57615 0.00020329 352.8465869677021 29.447 0.2902 29.367 29.235 29.525 -0.080429 30 17 2 0 0 0 0.27276 1 15214 15214 19.626 0 1 23696000 16998 12808 11665 11876 20182 20182 -0.007325557197191301 GRGPARVLGCR 11 Unmodified _GRGPARVLGCR_ 0 0 0 REV__ENST00000536901.1_1_4:1720289-1722919:-|nuORF REV__ENST00000536901.1_1_4:1720289-1722919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2177429199219 3 381.217219 1140.62983 0.52659 0.00020075 1.1592 0.0004419 1.6858 0.00064265 381.21743118074505 58.642 0.6674 58.581 58.254 58.922 -0.060722 85 33 4 0 0 0 0.71341 1 32073 32073 1.2148 0 1 7066500 + 16999 25350 11666 11877 20183 20183 0.0651392342804229 GRGWPWATRCE 11 Unmodified _GRGWPWATRCE_ 0 0 0 REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF REV__ENST00000344423.9_1_8:28205640-28205820:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8775634765625 3 440.208501 1317.60367 -0.58874 -0.00025917 0.58486 0.00025746 -0.0038828 -1.7093E-06 440.2086262499498 15.502 0.10905 15.488 15.432 15.541 -0.014067 66 37 2 0 0 0 0.74203 1 7587 7587 0.08335 0 1 760430 + 17000 25741 11667 11878 20184 20184 -0.04242390534113838 GRIDRIIYV 9 Unmodified _GRIDRIIYV_ 0 0 0 ENSG00000145375|ENST00000274008|SPATA5 ENSG00000145375|ENST00000274008|SPATA5 ENSG00000145375|ENST00000274008|SPATA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8311157226562 2 552.82984 1103.64513 3.5351 0.0019543 0.79137 0.00043749 4.3265 0.0023918 552.8303554338047 97.976 0.30811 97.958 97.791 98.099 -0.018188 27 10 4 0 0 0 0.27545 1 54452 54452 25.399 2.2509 1 2888900 17001 5690 11668 11879 20185 20185 0.09745113496887825 GRIPSERHQI 10 Unmodified _GRIPSERHQI_ 0 0 0 ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF ENSG00000178694|ENST00000314622|NSUN3 ENSG00000178694|ENST00000314622|NSUN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.5576477050781 3 398.223028 1191.64725 0.59874 0.00023843 -1.0109 -0.00040256 -0.41216 -0.00016413 398.2226723612553 17.595 0.29833 15.009 14.91 15.208 -2.5866 110 49 3 0 0 0 0.23279 1 9158 9158 12.175 4.0192 1 9916100 17002 8766 11669 11880 20186 20186 0.05909542234712717 GRKALALP 8 Unmodified _GRKALALP_ 0 0 0 REV__nc|ENSG00000135622|O95754-2|SEMA4F REV__nc|ENSG00000135622|O95754-2|SEMA4F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2670593261719 2 413.268887 824.523222 NaN NaN NaN NaN NaN NaN NaN 6.9825 1 6.8979 6.3979 7.3979 -0.08463 0 0 0 0.97444 1 3439 3439 0.69038 0 1 + 17003 20081 11670 11881 20187 20187 0.10394116205168302 GRKALALP 8 Unmodified _GRKALALP_ 0 0 0 REV__nc|ENSG00000135622|O95754-2|SEMA4F REV__nc|ENSG00000135622|O95754-2|SEMA4F MSMS AL20221201_MKP_PDAC_01 4 413.2691650390625 2 413.268887 824.523222 NaN NaN NaN NaN NaN NaN NaN 0.096133 1 -2.3858 -2.8858 -1.8858 -2.482 0 0 0 0.97444 1 52 52 0.69038 0 1 + 17004 20081 11670 11881 20188 20188 0.10394116205168302 GRKGSGAC 8 Unmodified _GRKGSGAC_ 0 0 0 ENST00000535576.5_1_12:10366177-10366556:+|nuORF ENST00000535576.5_1_12:10366177-10366556:+|nuORF ENST00000535576.5_1_12:10366177-10366556:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1817626953125 2 368.181955 734.349357 1.6465 0.0006062 -1.8518 -0.00068178 -0.20528 -7.5581E-05 368.18108977554266 38.053 0.4332 33.684 33.381 33.814 -4.3689 32 25 2 0 0 0 0.80676 1 22354 22354 2.5775 0 1 9615700 17005 14974 11671 11882 20189 20189 -0.028444125626151617 GRKINEPAPGL 11 Unmodified _GRKINEPAPGL_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5552673339844 3 384.555895 1150.64586 -0.35561 -0.00013675 -0.19928 -7.6633E-05 -0.55489 -0.00021339 384.5558202411425 22.825 0.22727 22.825 22.694 22.921 0 18 12 2 0 0 0 0.56638 1 11604 11604 18.721 12.098 1 2209700 + 17006 29495 11672 11883 20190 20190 0.07655908145943613 GRKINEPAPGL 11 Unmodified _GRKINEPAPGL_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5570983886719 3 384.555895 1150.64586 0.35407 0.00013616 -0.58163 -0.00022367 -0.22756 -8.7509E-05 384.5557068144203 25.858 0.26633 22.907 22.754 23.02 -2.9511 29 17 2 0 0 0 0.59689 1 14190 14190 12.856 0 1 13471000 + 17007 29495 11672 11883 20191 20191 0.07655908145943613 GRKINEPAPGL 11 Unmodified _GRKINEPAPGL_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.555895 1150.64586 -0.35561 -0.00013675 -0.19928 -7.6633E-05 -0.55489 -0.00021339 384.5558202411425 22.825 0.22727 22.825 22.694 22.921 0 -0.041223 0.0001489 NaN 18.721 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2209700 + 17008 29495 11672 11883 0.07655908145943613 GRKLILCKHKR 11 Unmodified _GRKLILCKHKR_ 0 0 0 REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF REV__ENST00000481894.1_1_1:115138166-115167938:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 676.4298095703125 2 676.42699 1350.83943 NaN NaN NaN NaN NaN NaN NaN 82.192 1 82.254 81.754 82.754 0.062004 0 0 0 0.94307 1 45462 45462 0.30703 0.30703 1 + 17009 27708 11673 11884 20192 20192 0.17804166381165487 GRKVPIIV 8 Unmodified _GRKVPIIV_ 0 0 0 REV__nc|ENSG00000132670|P18433-6|PTPRA REV__nc|ENSG00000132670|P18433-6|PTPRA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.3009643554688 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 0.056092 1 0.034027 -0.46597 0.53403 -0.022065 0 0 0 0.97444 1 29 29 2.5775 1.7838 1 + 17010 19871 11674 11885 20193 20193 0.1407526227337712 GRKWPGPL 8 Unmodified _GRKWPGPL_ 0 0 0 ENST00000582783.5_1_19:40826279-40826525:-|nuORF ENST00000582783.5_1_19:40826279-40826525:-|nuORF ENST00000582783.5_1_19:40826279-40826525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.766845703125 2 455.766512 909.518471 0.45611 0.00020788 1.0957 0.0004994 1.5518 0.00070727 455.7668851582778 73.14 0.39697 73.181 73.029 73.426 0.041725 43 18 3 0 0 0 0.80676 2 40262 40262;40370 2.5775 1.7838 1 14852000 17011 15578 11675 11886 20194;20195 20194 0.06009232062422143 GRKWPGPL 8 Unmodified _GRKWPGPL_ 0 0 0 ENST00000582783.5_1_19:40826279-40826525:-|nuORF ENST00000582783.5_1_19:40826279-40826525:-|nuORF ENST00000582783.5_1_19:40826279-40826525:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 455.766512 909.518471 0.58884 0.00026837 0.67622 0.0003082 1.2651 0.00057657 455.7668166861482 73.722 0.31989 73.247 73.092 73.412 -0.47588 -0.012016 -0.00027889 NaN 2.5775 16 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1869100 17012 15578 11675 11886 0.06009232062422143 GRLRLRFTL 9 Unmodified _GRLRLRFTL_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENST00000466324.1_1_11:64444212-64481216:-|nuORF nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3595581054688 2 566.359099 1130.70365 1.5599 0.00088346 -0.43226 -0.00024482 1.1276 0.00063864 566.3588745467666 102.87 0.14171 96.69 96.65 96.792 -6.1757 64 39 2 0 0 0 0.61381 1 69009 69009 0.52476 0 1 3859500 17013 2700;13752 11676 11887 20196 20196 0.1435221486201499 GRLYVEAAF 9 Unmodified _GRLYVEAAF_ 0 0 0 ENSG00000196549|ENST00000360490|MME ENSG00000196549|ENST00000360490|MME ENSG00000196549|ENST00000360490|MME MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2744140625 2 513.274367 1024.53418 0.06934 3.5591E-05 0.57443 0.00029484 0.64377 0.00033043 513.2745969886986 43.096 0.34256 42.786 42.587 42.93 -0.31039 37 15 3 0 0 0 0.10734 1 22863 22863 32.305 7.6316 1 18252000 17014 9838 11677 11888 20197 20197 0.02289473788800933 GRLYVEAAF 9 Unmodified _GRLYVEAAF_ 0 0 0 ENSG00000196549|ENST00000360490|MME ENSG00000196549|ENST00000360490|MME ENSG00000196549|ENST00000360490|MME MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2743530273438 2 513.274367 1024.53418 0.80247 0.00041188 0.25215 0.00012942 1.0546 0.00054131 513.2744002505833 42.747 0.27195 42.738 42.599 42.871 -0.0088196 26 12 3 0 0 0 0.10734 1 22876 22876 32.305 9.5692 1 11844000 17015 9838 11677 11888 20198 20198 0.02289473788800933 GRPFSPLGL 9 Unmodified _GRPFSPLGL_ 0 0 0 REV__ENST00000418888.5_2_2:170441100-170441295:+|nuORF REV__ENST00000418888.5_2_2:170441100-170441295:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2721557617188 2 472.271627 942.528701 NaN NaN NaN NaN NaN NaN NaN 64.956 1 64.956 64.456 65.456 7.6294E-06 0 0 0 0.16996 1 35587 35587 34.402 1.616 1 + 17016 26809 11678 11889 20199 20199 0.055137949969775946 GRPRRRLRRRR 11 Unmodified _GRPRRRLRRRR_ 0 0 0 REV__ENSG00000183579|ENST00000544604|ZNRF3 REV__ENSG00000183579|ENST00000544604|ZNRF3 MSMS AL20221201_MKP_PDAC_01 4 767.996337890625 2 767.996149 1533.97774 NaN NaN NaN NaN NaN NaN NaN 104.54 1 98.362 97.862 98.862 -6.1757 0 0 0 0.9435 1 70003 70003 0 0 1 + 17017 23357 11679 11890 20200 20200 0.23211470464480044 GRRDQYAC 8 Unmodified _GRRDQYAC_ 0 0 0 REV__ENSG00000183624|ENST00000383463|HMCES REV__ENSG00000183624|ENST00000383463|HMCES MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7203979492188 2 484.721975 967.429398 NaN NaN NaN NaN NaN NaN NaN 68.317 1 68.317 67.817 68.817 0 0 0 0 0.97444 1 38085 38085 2.5775 0.27475 1 + 17018 23359 11680 11891 20201 20201 -0.05561970959422524 GRRGRWYLYLI 11 Unmodified _GRRGRWYLYLI_ 0 0 0 REV__ENST00000496806.2_1_6:87925633-87969808:+|nuORF REV__ENST00000496806.2_1_6:87925633-87969808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.9449462890625 3 484.945606 1451.81499 0.31397 0.00015226 -1.2617 -0.00061184 -0.94769 -0.00045958 484.9450575678484 55.183 0.20046 55.114 55.038 55.238 -0.068741 22 9 3 0 0 0 0.72981 1 29990 29990 1.4551 0.24029 1 1342900 + 17019 27969 11681 11892 20202 20202 0.10715229499305678 GRRKRFDVLLA 11 Unmodified _GRRKRFDVLLA_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;ENST00000472569.1_1_3:63968607-63974001:+|nuORF nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.9075317382812 2 665.906945 1329.79934 1.2531 0.00083444 0.016833 1.121E-05 1.2699 0.00084565 665.9067850627521 105.72 0.3789 99.549 99.416 99.795 -6.1757 88 42 3 0 0 0 0.721 1 70775 70775 2.2828 1.0894 1 7671400 17020 7037 11682 11893 20203 20203 0.14762942982270033 GRRPAPAAAL 10 Unmodified _GRRPAPAAAL_ 0 0 0 ENST00000344034.4_1_2:27610002-27632374:-|nuORF ENST00000344034.4_1_2:27610002-27632374:-|nuORF ENST00000344034.4_1_2:27610002-27632374:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.2940979003906 2 490.293425 978.572297 NaN NaN NaN NaN NaN NaN NaN 38.526 1 34.157 33.657 34.657 -4.3689 0 0 0 0.83398 1 22742 22742 10.824 0 1 17021 12009 11683 11894 20204 20204 0.08215404494103495 GRRPSWWP 8 Unmodified _GRRPSWWP_ 0 0 0 ENST00000585170.1_1_17:56603775-56604489:-|nuORF;ENST00000584789.1_1_17:56603775-56609324:-|nuORF;ENST00000580796.5_1_17:56603775-56604561:-|nuORF;ENST00000583273.5_1_17:56603775-56606703:-|nuORF ENST00000585170.1_1_17:56603775-56604489:-|nuORF ENST00000585170.1_1_17:56603775-56604489:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.249267578125 2 521.272493 1040.53043 1.3032 0.0006793 -0.43879 -0.00022873 0.86437 0.00045057 521.2721637500049 86.461 0.43774 80.286 79.977 80.414 -6.1757 31 23 2 0 0 0 8.7369 1 57080 57080 10.183 0.10947 1 6087100 17022 15603 11684 11895 20205 20205 0.011788488055799462 GRRRKRRRLRI 11 Unmodified _GRRRKRRRLRI_ 0 0 0 REV__ENST00000260731.4_1_10:94353109-94353202:+|nuORF REV__ENST00000260731.4_1_10:94353109-94353202:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 762.0089111328125 2 762.008725 1522.0029 NaN NaN NaN NaN NaN NaN NaN 66.868 1 66.868 66.368 67.368 0 0 0 0 0.9435 1 37294 37294 0 0 1 + 17023 24969 11685 11896 20206 20206 0.2627752526709628 GRRRQRHRRRY 11 Unmodified _GRRRQRHRRRY_ 0 0 0 REV__ENSG00000001629|ENST00000265742|ANKIB1 REV__ENSG00000001629|ENST00000265742|ANKIB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1597.438842773438 1 1596.9279 1595.92062 -0.81916 -0.0013081 0.74804 0.0011946 -0.071112 -0.00011356 1596.9289855625675 29.298 0.085627 29.298 29.222 29.308 0 5 3 2 0 0 0 0.30605 1 15150 15150 0 0 1 590370 + 17024 16930 11686 11897 20207 20207 0.1465000318814873 GRRWRTWRGG 10 Unmodified _GRRWRTWRGG_ 0 0 0 REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1288.102661132812 1 1287.69298 1286.6857 0.60255 0.0007759 -0.032733 -4.2149E-05 0.56982 0.00073375 1288.69199614258 73.45 0.13504 73.494 73.384 73.519 0.043976 6 5 2 0 0 0 0.24012 1 40442 40442 0 0 1 604320 + 17025 24805 11687 11898 20208 20208 0.05382892659849858 GRSGVVDKRAR 11 Unmodified _GRSGVVDKRAR_ 0 0 0 KIF11|p.A277V|1|0.18|ENSG00000138160|chr10:92613417-92613417|C/T|missense_variant KIF11|p.A277V|1|0.18|ENSG00000138160|chr10:92613417-92613417|C/T|missense_variant KIF11|p.A277V|1|0.18|ENSG00000138160|chr10:92613417-92613417|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 400.8994140625 3 400.902177 1199.6847 NaN NaN NaN NaN NaN NaN NaN 93.179 1 87.003 86.503 87.503 -6.1757 0 0 0 0.91362 1 61660 61660 6.6235 0.43161 1 17026 15939 11688 11899 20209 20209 0.09284633500305972 GRTEEPEEFLW 11 Unmodified _GRTEEPEEFLW_ 0 0 0 REV__STX8-RTN1|1|fusion REV__STX8-RTN1|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.8860168457031 3 464.885858 1391.63574 NaN NaN NaN NaN NaN NaN NaN 20.205 1 20.233 19.733 20.733 0.028357 0 0 0 0.94301 1 10219 10219 0.094841 0 1 + 17027 22470 11689 11900 20210 20210 -0.04440744369958338 GRTQEWPR 8 Unmodified _GRTQEWPR_ 0 0 0 REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF REV__ENST00000576250.5_1_16:3109019-3109328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2640991210938 2 515.264865 1028.51518 0.2869 0.00014783 -0.83396 -0.00042971 -0.54706 -0.00028188 515.2641635433447 98.202 0.24654 98.009 97.853 98.099 -0.19321 14 8 2 0 0 0 0.80799 1 53655 53655 1.8442 0 1 544100 + 17028 29023 11690 11901 20211 20211 0.0020593721774275764 GRTSSDEH 8 Unmodified _GRTSSDEH_ 0 0 0 REV__ENSG00000204516|ENST00000252229|MICB REV__ENSG00000204516|ENST00000252229|MICB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2232666015625 2 444.693938 887.373323 0.69831 0.00031053 -2.2264 -0.00099006 -1.5281 -0.00067953 444.6932048578826 49.524 0.21212 49.524 49.393 49.606 0 18 8 3 0 0 0 8.7369 1 27236 27236 1.8442 1.4936 1 2543700 + 17029 24177 11691 11902 20212 20212 -0.07486900595233692 GRWPRRRLTEI 11 Unmodified _GRWPRRRLTEI_ 0 0 0 ENST00000603538.1_1_8:64080822-64080966:-|nuORF ENST00000603538.1_1_8:64080822-64080966:-|nuORF ENST00000603538.1_1_8:64080822-64080966:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.6158142089844 3 480.616259 1438.82695 0.86755 0.00041696 -0.62215 -0.00029902 0.24539 0.00011794 480.61580121335396 42.073 0.26937 37.388 37.252 37.521 -4.6846 23 16 2 0 0 0 0.64126 1 25327 25327 9.2438 4.5279 1 7406200 17030 15833 11692 11903 20213 20213 0.1250884624248556 GRYVPISGVL 10 Unmodified _GRYVPISGVL_ 0 0 0 REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2121276855469 3 354.209836 1059.60768 1.2766 0.0004522 1.9753 0.00069968 3.252 0.0011519 354.21096447162665 43.91 0.31757 39.145 38.985 39.302 -4.7648 27 20 2 0 0 0 0.46514 1 26708 26708 15.739 0.78146 1 10990000 + 17031 25305 11693 11904 20214 20214 0.08026022231297247 GRYYASAICK 10 Unmodified _GRYYASAICK_ 0 0 0 REV__nc|ENSG00000100228|O95755-2|RAB36 REV__nc|ENSG00000100228|O95755-2|RAB36 MSMS AL20221201_MKP_PDAC_01 4 377.85986328125 3 377.858698 1130.55426 NaN NaN NaN NaN NaN NaN NaN 50.528 1 44.989 44.489 45.489 -5.5391 0 0 0 0.71157 1 31714 31714 10.315 4.9125 1 + 17032 18030 11694 11905 20215 20215 -0.0057909854290301155 GSALCQSR 8 Unmodified _GSALCQSR_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MSMS AL20221201_MKP_PDAC_01 4 411.1999816894531 2 411.200344 820.386136 NaN NaN NaN NaN NaN NaN NaN 97.491 1 91.315 90.815 91.815 -6.1757 0 0 0 0.85975 1 64608 64608 20.454 3.5113 1 + 17033 19319 11695 11906 20216 20216 -0.03124160736695103 GSALRLRQTF 10 Unmodified _GSALRLRQTF_ 0 0 0 nc|ENSG00000177640|Q6XLA1|CASC2 nc|ENSG00000177640|Q6XLA1|CASC2 nc|ENSG00000177640|Q6XLA1|CASC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8309936523438 2 574.830372 1147.64619 0.81435 0.00046811 -1.5349 -0.00088232 -0.72057 -0.0004142 574.8298847313594 57.031 0.19761 56.965 56.859 57.057 -0.066368 11 9 2 0 0 0 0.63399 1 31045 31045 9.3831 2.0939 1 1948900 17034 16407 11696 11907 20217 20217 0.07827327865788902 GSCAVLKK 8 Unmodified _GSCAVLKK_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2;ENST00000485061.2_1_13:77667458-77671775:-|nuORF ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2327270507812 2 403.233656 804.452759 NaN NaN NaN NaN NaN NaN NaN 0.69915 1 0.67853 0.17853 1.1785 -0.020623 0 0 0 0.97444 1 363 363 0.69038 0 1 17035 315 11697 11908 20218 20218 0.042710748252034136 GSDDSHTNM 9 Unmodified _GSDDSHTNM_ 0 0 0 REV__ENSG00000184792|ENST00000332585|OSBP2 REV__ENSG00000184792|ENST00000332585|OSBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.1756896972656 2 482.177263 962.339974 -0.34433 -0.00016603 -1.7959 -0.00086596 -2.1403 -0.001032 482.1766833648355 41.137 0.23605 41.137 41.045 41.281 0 44 11 6 0 0 0 0.55775 1 22153 22153 3.9444 1.0552 1 8185900 + 17036 23444 11698 11909 20219 20219 -0.14270270429449283 GSDRFLILFN 10 Unmodified _GSDRFLILFN_ 0 0 0 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3197631835938 2 591.319306 1180.62406 0.028807 1.7034E-05 0.56368 0.00033331 0.59248 0.00035035 591.3195659383487 77.253 0.33359 77.304 77.108 77.441 0.05011 41 13 4 0 0 0 0.61603 1 42576 42576 7.609 0 1 13526000 + 17037 19139 11699 11910 20220 20220 0.04097103397407409 GSDSRKSM 8 Unmodified _GSDSRKSM_ 0 0 0 ENSG00000163159|ENST00000368892|VPS72;nc|ENSG00000163159|Q15906-2|VPS72 ENSG00000163159|ENST00000368892|VPS72 ENSG00000163159|ENST00000368892|VPS72 MSMS AL20221201_MKP_PDAC_01 4 434.202392578125 2 434.203084 866.391615 NaN NaN NaN NaN NaN NaN NaN 16.634 1 14.077 13.577 14.577 -2.557 0 0 0 0.97444 1 8631 8631 4.756 1.8668 1 17038 6961 11700 11911 20221 20221 -0.04692481944869087 GSDVRYSWVL 10 Unmodified _GSDVRYSWVL_ 0 0 0 ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16458768-16459152:+|nuORF ENSG00000008710|ENST00000262304|PKD1 ENSG00000008710|ENST00000262304|PKD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5367126464844 3 394.536501 1180.58767 0.90289 0.00035622 2.6053 0.0010279 3.5081 0.0013841 394.5375703842605 43.493 0.2855 38.728 38.65 38.935 -4.7648 27 17 2 0 0 0 0.6606 1 26384 26384 3.8763 0.28927 1 9959500 17039 395 11701 11912 20222 20222 0.004602265006724338 GSEALALFL 9 Unmodified _GSEALALFL_ 0 0 0 REV__ENST00000534751.2_1_11:45235120-45235297:+|nuORF REV__ENST00000534751.2_1_11:45235120-45235297:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5054321289062 1 920.50876 919.501483 0.38839 0.00035751 0.29559 0.00027209 0.68397 0.0006296 920.508359030377 82.5 0.30988 82.005 81.794 82.104 -0.4952 19 12 2 0 0 0 0.095405 1 45103 45103 34.102 5.6156 1 717470 + 17040 28507 11702 11913 20223 20223 0.038512666659471506 GSEEDVESMQF 11 Unmodified _GSEEDVESMQF_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.8370666503906 3 419.836176 1256.4867 -0.46046 -0.00019332 0.87312 0.00036657 0.41266 0.00017325 419.83687091576627 40.857 0.64573 40.857 40.659 41.304 0 380 51 9 0 0 0 0.71036 1 21917 21917 1.3296 0 1 304700000 + 17041 17566 11703 11914 20224 20224 -0.13128638055013653 GSETCTMT 8 Unmodified _GSETCTMT_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.1570739746094 2 415.156954 828.299354 0.29743 0.00012348 -0.0045405 -1.885E-06 0.29289 0.0001216 415.1568140028656 68.793 0.19765 68.312 68.202 68.399 -0.48071 12 8 2 0 0 0 0.80992 1 37612 37612 0.69038 0 1 564980 + + 17042 16863 11704 11915 20225 20225 -0.12166328073419663 GSETKYMEIL 10 Unmodified _GSETKYMEIL_ 0 0 0 UNC5CL|p.L375S|1|0.17|ENSG00000124602|chr6:41030751-41030751|A/G|missense_variant UNC5CL|p.L375S|1|0.17|ENSG00000124602|chr6:41030751-41030751|A/G|missense_variant UNC5CL|p.L375S|1|0.17|ENSG00000124602|chr6:41030751-41030751|A/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8628845214844 3 390.861885 1169.56383 1.0372 0.0004054 -0.11427 -4.4663E-05 0.92292 0.00036073 390.8620031806084 35.264 0.99252 31.169 30.718 31.711 -4.0951 135 60 3 0 0 0 0.6785 1 20236 20236 2.8433 0 1 34903000 17043 30205 11705 11916 20226 20226 -0.0141737504802677 GSFTQPMFQR 10 Unmodified _GSFTQPMFQR_ 0 0 0 REV__ENSG00000162413|ENST00000377658|KLHL21 REV__ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.1939697265625 3 400.193969 1197.56008 0.1331 5.3267E-05 -0.19217 -7.6906E-05 -0.059068 -2.3639E-05 400.194020993991 25.967 0.80646 23.016 22.754 23.56 -2.9511 132 48 4 0 0 0 0.29752 2 14375 14254;14375 18.721 2.1553 1 400020000 + 17044 21644 11706 11917 20227;20228 20228 -0.030800000312410702 GSGIGASCVSL 11 Unmodified _GSGIGASCVSL_ 0 0 0 nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 nc|ENSG00000196338|Q9NZ94-3|NLGN3 nc|ENSG00000196338|Q9NZ94-3|NLGN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.4599609375 1 950.461158 949.453881 0.62027 0.00058955 -1.4324 -0.0013615 -0.81215 -0.00077192 950.4598722288473 69.21 0.68982 63.034 62.592 63.281 -6.1757 58 37 2 0 0 0 0.30985 1 45004 45004 26.268 0.86883 1 29527000 17045 9800 11707 11918 20229 20229 -0.02286755596560397 GSGTASAEAF 10 Unmodified _GSGTASAEAF_ 0 0 0 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 897.3933715820312 1 897.394852 896.387576 -0.67313 -0.00060406 0.3569 0.00032028 -0.31623 -0.00028378 897.3948204755428 30.055 0.292 30.055 29.847 30.139 0 23 13 2 0 0 0 0.24625 2 15512 15512;15619 30.637 6.616 1 1107200 17046 3205 11708 11919 20230;20231 20230 -0.06476248166950427 GSGYLNWE 8 Unmodified _GSGYLNWE_ 0 0 0 nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4041748046875 1 925.405023 924.397747 0.50734 0.00046949 -0.92543 -0.0008564 -0.4181 -0.00038691 925.4044884490278 74.485 0.3077 74.485 74.318 74.626 0 23 13 2 0 0 0 0.79887 1 41495 41495 7.2892 2.0586 1 1240000 17047 10505 11709 11920 20232 20232 -0.067476404417107 GSGYLNWE 8 Unmodified _GSGYLNWE_ 0 0 0 nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2060852050781 2 463.20615 924.397747 0.58792 0.00027233 -0.53951 -0.00024991 0.048404 2.2421E-05 463.2059228168241 74.969 0.39495 74.492 74.301 74.696 -0.47714 30 16 3 0 0 0 0.63229 1 40998 40998 23.148 2.6948 1 2616300 17048 10505 11709 11920 20233 20233 -0.067476404417107 GSGYLNWE 8 Unmodified _GSGYLNWE_ 0 0 0 nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.4112548828125 1 925.405023 924.397747 0.39049 0.00036136 0.16007 0.00014813 0.55056 0.00050949 925.4048075287109 82.318 0.48947 76.143 75.9 76.39 -6.1757 41 26 2 0 0 0 0.76266 1 54189 54189 11.64 3.7301 1 11813000 17049 10505 11709 11920 20234 20234 -0.067476404417107 GSHLPMSCVSL 11 Unmodified _GSHLPMSCVSL_ 0 0 0 REV__ENSG00000118707|ENST00000373872|TGIF2 REV__ENSG00000118707|ENST00000373872|TGIF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7689819335938 2 565.770277 1129.526 0.43691 0.00024719 2.2506 0.0012733 2.6875 0.0015205 565.7713866021525 43.202 0.2953 43.202 43.046 43.341 0 45 14 4 0 0 0 0.30985 1 23520 23520 26.268 3.5319 1 41739000 + 17050 19166 11710 11921 20235 20235 -0.03358164514474993 GSHSSCSQCGK 11 Unmodified _GSHSSCSQCGK_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7144775390625 2 540.71349 1079.41243 0.1964 0.00010619 1.3792 0.00074574 1.5756 0.00085194 540.7141602873145 69.734 0.29147 69.734 69.618 69.91 0 31 13 3 0 0 0 0.6889 1 38828 38828 5.2969 1.7004 1 2425600 17051 7607 11711 11922 20236 20236 -0.12410259627540654 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.3011474609375 2 628.299967 1254.58538 -0.64491 -0.0004052 0.33926 0.00021316 -0.30565 -0.00019204 628.3002383522833 28.273 0.16255 28.273 28.149 28.311 0 11 7 2 0 0 0 0.39949 1 14578 14578 21.537 0 1 1149900 + 17052 24623 11712 11923 20237 20237 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.8012084960938 2 628.299967 1254.58538 0.36513 0.00022941 -1.6731 -0.0010512 -1.308 -0.00082181 628.2988633164015 28.214 0.25024 28.167 28.038 28.288 -0.046408 22 9 3 0 0 0 0.14665 1 14546 14546 37.075 20.926 1 12070000 + 17053 24623 11712 11923 20238 20238 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.299072265625 2 628.299967 1254.58538 0.30741 0.00019314 -1.8314 -0.0011507 -1.524 -0.00095754 628.2990766998332 28.125 0.15115 28.155 28.061 28.212 0.029566 8 5 2 0 0 0 0.5229 1 14658 14658 15.248 0 1 2613000 + 17054 24623 11712 11923 20239 20239 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.2999267578125 2 628.299967 1254.58538 0.82446 0.00051801 -1.3526 -0.00084987 -0.52818 -0.00033186 628.2990775216452 32.209 0.40046 28.353 28.133 28.533 -3.8562 54 23 3 0 0 0 0.13335 1 18235 18235 38.615 13.215 1 47853000 + 17055 24623 11712 11923 20240 20240 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 628.299967 1254.58538 -0.64491 -0.0004052 0.33926 0.00021316 -0.30565 -0.00019204 628.3002383522833 28.273 0.16255 28.273 28.149 28.311 0 0.035873 0.0021424 NaN 38.615 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1149900 + 17056 24623 11712 11923 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 628.299967 1254.58538 0.36513 0.00022941 -1.6731 -0.0010512 -1.308 -0.00082181 628.2988633164015 28.214 0.25024 28.167 28.038 28.288 -0.046408 -0.069687 -0.00038636 NaN 38.615 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 12070000 + 17057 24623 11712 11923 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 628.299967 1254.58538 0.30741 0.00019314 -1.8314 -0.0011507 -1.524 -0.00095754 628.2990766998332 28.125 0.15115 28.155 28.061 28.212 0.029566 -0.082239 -0.00058528 NaN 38.615 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2613000 + 17058 24623 11712 11923 -0.031728091844343 GSHVRQHNSFS 11 Unmodified _GSHVRQHNSFS_ 0 0 0 REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 628.299967 1254.58538 0.82446 0.00051801 -1.3526 -0.00084987 -0.52818 -0.00033186 628.2990775216452 32.209 0.40046 28.353 28.133 28.533 -3.8562 0.11605 1.6348E-05 NaN 38.615 54 23 3 NaN NaN NaN NaN 0 NaN NaN 0 47853000 + 17059 24623 11712 11923 -0.031728091844343 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7745666503906 2 477.774003 953.533452 0.62384 0.00029806 -0.3845 -0.00018371 0.23934 0.00011435 477.7736478291986 46.363 0.22947 46.026 45.901 46.131 -0.33664 24 11 3 0 0 0 0.37649 1 24783 24783 46.921 4.8263 1 15029000 + 17060 28282 11713 11924 20241 20241 0.054826791397545094 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7760925292969 2 477.774003 953.533452 0.81005 0.00038702 0.15348 7.3328E-05 0.96353 0.00046035 477.77403797047873 51.497 0.27276 45.848 45.672 45.945 -5.649 26 16 2 0 0 0 0.3408 1 32362 32362 50.855 8.7605 1 38112000 + 17061 28282 11713 11924 20242 20242 0.054826791397545094 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 477.774003 953.533452 0.80977 0.00038689 -0.17448 -8.3363E-05 0.63528 0.00030352 477.77384919262676 46.02 0.22857 46.02 45.957 46.186 0 0.019796 -3.1806E-05 NaN 50.855 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1917500 + 17062 28282 11713 11924 0.054826791397545094 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 477.774003 953.533452 0.62384 0.00029806 -0.3845 -0.00018371 0.23934 0.00011435 477.7736478291986 46.363 0.22947 46.026 45.901 46.131 -0.33664 0.026565 -0.00023249 NaN 50.855 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 15029000 + 17063 28282 11713 11924 0.054826791397545094 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 477.774003 953.533452 0.60082 0.00028706 -0.085168 -4.0691E-05 0.51566 0.00024637 477.7739556303733 46.133 0.17164 46.105 45.973 46.145 -0.028011 0.10537 5.3539E-05 NaN 50.855 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1295300 + 17064 28282 11713 11924 0.054826791397545094 GSIFVYRI 8 Unmodified _GSIFVYRI_ 0 0 0 REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF REV__ENST00000520693.5_1_5:133622066-133644414:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 477.774003 953.533452 0.81005 0.00038702 0.15348 7.3328E-05 0.96353 0.00046035 477.77403797047873 51.497 0.27276 45.848 45.672 45.945 -5.649 -0.15173 0.00028158 NaN 50.855 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 38112000 + 17065 28282 11713 11924 0.054826791397545094 GSIGAITALY 10 Unmodified _GSIGAITALY_ 0 0 0 REV__nc|ENSG00000196535|Q92614-5|MYO18A REV__nc|ENSG00000196535|Q92614-5|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.5311279296875 1 965.530224 964.522947 0.64378 0.00062159 -1.8477 -0.001784 -1.2039 -0.0011624 965.5282907098934 51.041 0.24862 51.041 50.938 51.187 0 17 12 2 0 0 0 0.1028 1 28146 28146 46.021 0 1 6501500 + 17066 23840 11714 11925 20243 20243 0.03926651694644079 GSILVATFFY 10 Unmodified _GSILVATFFY_ 0 0 0 REV__ENSG00000012174|ENST00000379484|MBTPS2 REV__ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3012084960938 2 559.30005 1116.58555 0.60034 0.00033577 1.4102 0.00078872 2.0105 0.0011245 559.3006864014839 93.43 0.73349 92.973 92.599 93.333 -0.4574 61 32 2 0 0 0 0.71123 1 50915 50915 1.6526 0.85899 1 752690 + 17067 17064 11715 11926 20244 20244 0.03191797762860915 GSKKPYHS 8 Unmodified _GSKKPYHS_ 0 0 0 REV__ENST00000360184.8_1_14:102452783-102452858:+|nuORF REV__ENST00000360184.8_1_14:102452783-102452858:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2383728027344 2 452.237784 902.461016 0.95403 0.00043145 1.2362 0.00055906 2.1902 0.0009905 452.23839254277965 52.328 1.0573 52.269 51.611 52.669 -0.058918 82 51 2 0 0 0 0.80311 1 28292 28292 4.756 2.1785 1 2291400 + 17068 25907 11716 11927 20245 20245 0.005883450661826828 GSKTWDRFQMR 11 Unmodified _GSKTWDRFQMR_ 0 0 0 ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20;ENST00000523936.5_1_8:56985651-56985840:-|nuORF ENSG00000008988|ENST00000009589|RPS20 ENSG00000008988|ENST00000009589|RPS20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2347717285156 3 471.234827 1410.68265 0.066349 3.1266E-05 1.2335 0.00058127 1.2999 0.00061254 471.23532708404133 23.29 0.27225 23.307 23.157 23.43 0.01749 41 13 4 0 0 0 0.67037 1 11936 11936 7.0371 0.80273 1 53805000 17069 400 11717 11928 20246 20246 -0.006261632998302957 GSKTWDRFQMR 11 Unmodified _GSKTWDRFQMR_ 0 0 0 ENSG00000008988|ENST00000009589|RPS20;nc|ENSG00000008988|P60866-2|RPS20;ENST00000523936.5_1_8:56985651-56985840:-|nuORF ENSG00000008988|ENST00000009589|RPS20 ENSG00000008988|ENST00000009589|RPS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2333679199219 3 471.234827 1410.68265 0.22162 0.00010444 1.1878 0.00055972 1.4094 0.00066416 471.23516422725606 26.306 0.3177 23.354 23.184 23.502 -2.9511 38 17 3 0 0 0 0.70705 1 14554 14554 3.5927 2.263 1 19936000 17070 400 11717 11928 20247 20247 -0.006261632998302957 GSLHILSGPV 10 Unmodified _GSLHILSGPV_ 0 0 0 nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.558349609375 1 979.557107 978.549831 0.076683 7.5115E-05 -1.2 -0.0011755 -1.1233 -0.0011004 979.5559131088633 62.858 0.37538 62.858 62.655 63.031 0 37 15 3 0 0 0 0.60623 1 34988 34988 10.824 0.75 1 6072900 17071 10792 11718 11929 20248 20248 0.05969760305856653 GSLHILSGPV 10 Unmodified _GSLHILSGPV_ 0 0 0 nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5576782226562 1 979.557107 978.549831 0.24423 0.00023924 -0.7147 -0.00070009 -0.47047 -0.00046085 979.5563432295982 63.268 0.41279 62.782 62.603 63.016 -0.48617 60 18 4 0 0 0 0.60623 1 34626 34626 10.824 2.9138 1 28564000 17072 10792 11718 11929 20249 20249 0.05969760305856653 GSLLGISLYL 10 Unmodified _GSLLGISLYL_ 0 0 0 REV__ENSG00000174327|ENST00000308027|SLC16A13 REV__ENSG00000174327|ENST00000308027|SLC16A13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.30859375 2 518.307875 1034.6012 -0.72529 -0.00037592 1.1371 0.00058935 0.41179 0.00021343 518.3083631179944 78.134 0.26763 77.652 77.535 77.803 -0.4826 20 12 2 0 0 0 0.11755 1 42771 42771 43.858 5.8843 1 1228100 + 17073 22784 11719 11930 20250 20250 0.08528084279896575 GSLLGISLYL 10 Unmodified _GSLLGISLYL_ 0 0 0 REV__ENSG00000174327|ENST00000308027|SLC16A13 REV__ENSG00000174327|ENST00000308027|SLC16A13 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 518.307875 1034.6012 0.18413 9.5438E-05 -2.4805 -0.0012856 -2.2963 -0.0011902 518.3082245229292 77.559 0.32536 77.609 77.372 77.698 0.05011 -0.021281 -0.0035148 NaN 43.858 27 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1620700 + 17074 22784 11719 11930 0.08528084279896575 GSMKHPVVILM 11 Unmodified _GSMKHPVVILM_ 0 0 0 REV__ENSG00000099937|ENST00000215727|SERPIND1 REV__ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.559326171875 3 404.559483 1210.65662 -0.12453 -5.0381E-05 -0.41596 -0.00016828 -0.5405 -0.00021866 404.55955299946345 38.329 0.22015 38.346 38.214 38.434 0.01704 18 9 3 0 0 0 0.5551 1 20367 20367 14.838 1.3192 1 3651900 + 17075 17992 11720 11931 20251 20251 0.059718512043446026 GSPEEHAIYV 10 Unmodified _GSPEEHAIYV_ 0 0 0 ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A ENST00000510445.1_1_5:93120070-93217196:-|nuORF ENST00000510445.1_1_5:93120070-93217196:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.766845703125 2 551.264196 1100.51384 0.034926 1.9253E-05 2.627 0.0014482 2.6619 0.0014674 551.265190693214 60.449 0.14315 59.958 59.906 60.049 -0.49079 9 6 2 0 0 0 0.52888 1 32945 32945 14.838 2.3067 1 5807500 17076 2965 11721 11932 20252 20252 -0.03239741661673179 GSPSSTPTTHF 11 Unmodified _GSPSSTPTTHF_ 0 0 0 nc|ENSG00000205277|Q9UKN1|MUC12;ENSG00000205277|ENST00000536621|MUC12 nc|ENSG00000205277|Q9UKN1|MUC12 nc|ENSG00000205277|Q9UKN1|MUC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8423461914062 3 373.508611 1117.504 0.012553 4.6886E-06 -1.1211 -0.00041874 -1.1086 -0.00041406 373.5081413876919 15.362 0.74717 15.368 15.185 15.932 0.0057774 111 57 4 0 0 0 0.67922 1 7725 7725 2.8433 0 1 6605800 17077 16511 11722 11933 20253 20253 -0.05004929667052238 GSPVHIHP 8 Unmodified _GSPVHIHP_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000578204.1_1_17:57682500-57682581:+|nuORF nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.22802734375 2 422.22722 842.439886 0.46909 0.00019806 -0.050198 -2.1195E-05 0.41889 0.00017687 422.2278347758511 55.554 0.22657 55.076 54.905 55.132 -0.47798 32 10 4 0 0 0 0.80624 1 30085 30085 2.8892 0 1 4457600 17078 2567 11723 11934 20254 20254 0.012363797573243573 GSPVHIHP 8 Unmodified _GSPVHIHP_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000578204.1_1_17:57682500-57682581:+|nuORF nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.22722 842.439886 0.073069 3.0852E-05 0.90067 0.00038029 0.97374 0.00041114 422.2281287388728 54.98 0.33648 54.98 54.79 55.126 0 -0.047968 0.00063173 NaN 2.8892 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11674000 17079 2567 11723 11934 0.012363797573243573 GSPVHIHP 8 Unmodified _GSPVHIHP_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40;ENST00000578204.1_1_17:57682500-57682581:+|nuORF nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 422.22722 842.439886 0.46909 0.00019806 -0.050198 -2.1195E-05 0.41889 0.00017687 422.2278347758511 55.554 0.22657 55.076 54.905 55.132 -0.47798 0.047968 -0.00017124 NaN 2.8892 32 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4457600 17080 2567 11723 11934 0.012363797573243573 GSQKHAVF 8 Unmodified _GSQKHAVF_ 0 0 0 REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64 REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2337036132812 2 437.232502 872.450451 1.0158 0.00044413 1.3415 0.00058653 2.3572 0.0010307 437.2329869897776 47.292 0.57327 47.253 47.047 47.62 -0.038643 50 27 2 0 0 0 0.80143 1 25522 25522 5.7604 0.52976 1 11336000 + 17081 17106 11724 11935 20255 20255 0.009123624117592044 GSQKHAVF 8 Unmodified _GSQKHAVF_ 0 0 0 REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64 REV__nc|ENSG00000020256|Q9NTW7-3|ZFP64 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 437.232502 872.450451 1.0158 0.00044413 1.3415 0.00058653 2.3572 0.0010307 437.2329869897776 47.292 0.57327 47.253 47.047 47.62 -0.038643 0.09984 8.8838E-05 NaN 5.7604 50 27 2 NaN NaN NaN NaN 0 NaN NaN 0 11336000 + 17082 17106 11724 11935 0.009123624117592044 GSRISSSSF 9 Unmodified _GSRISSSSF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2300720214844 2 464.230156 926.445759 0.050351 2.3374E-05 -0.37397 -0.00017361 -0.32362 -0.00015023 464.2298719849286 25.789 0.27024 25.789 25.654 25.924 0 23 12 3 0 0 0 0.047788 1 13236 13236 45.7 9.6554 1 2479400 + 17083 165 11725 11936 20256 20256 -0.02040566521668552 GSRQGSAEAL 10 Unmodified _GSRQGSAEAL_ 0 0 0 nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 nc|ENSG00000107593|Q9P0L9-2|PKD2L1 nc|ENSG00000107593|Q9P0L9-2|PKD2L1 MSMS AL20221201_MKP_PDAC_01 4 488.2476806640625 2 488.246338 974.478122 NaN NaN NaN NaN NaN NaN NaN 31.806 1 28.111 27.611 28.611 -3.6958 0 0 0 0.21708 1 18047 18047 41.84 1.8823 1 17084 2504 11726 11937 20257 20257 -0.010137791186821232 GSRWLHPDH 9 Unmodified _GSRWLHPDH_ 0 0 0 REV__ENSG00000166126|ENST00000299155|AMN REV__ENSG00000166126|ENST00000299155|AMN MSMS AL20221201_MKP_PDAC_01 4 368.5145874023438 3 368.849302 1103.52608 NaN NaN NaN NaN NaN NaN NaN 17.638 1 15.051 14.551 15.551 -2.5866 0 0 0 0.83049 1 9241 9241 2.2828 0.5405 1 + 17085 22085 11727 11938 20258 20258 -0.02154660407973097 GSSHCCGS 8 Unmodified _GSSHCCGS_ 0 0 0 REV__ENSG00000187173|ENST00000368779|LCE2A REV__ENSG00000187173|ENST00000368779|LCE2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1218872070312 2 369.120706 736.226858 NaN NaN NaN NaN NaN NaN NaN 51.172 1 51.172 50.672 51.672 0 0 0 0 0.97444 1 28245 28245 2.5775 2.5775 1 + 17086 21484 11728 11939 20259 20259 -0.15180617356338644 GSSHCCGS 8 Unmodified _GSSHCCGS_ 0 0 0 REV__ENSG00000187173|ENST00000368779|LCE2A REV__ENSG00000187173|ENST00000368779|LCE2A MSMS AL20221201_MKP_PDAC_01 4 368.8559875488281 2 369.120706 736.226858 NaN NaN NaN NaN NaN NaN NaN 16.449 1 13.892 13.392 14.392 -2.557 0 0 0 0.97444 1 8521 8521 0.69038 0.69038 1 + 17087 21484 11728 11939 20260 20260 -0.15180617356338644 GSSHCCGS 8 Unmodified _GSSHCCGS_ 0 0 0 REV__ENSG00000187173|ENST00000368779|LCE2A REV__ENSG00000187173|ENST00000368779|LCE2A MSMS AL20221201_MKP_PDAC_01 4 369.1219177246094 2 369.120706 736.226858 NaN NaN NaN NaN NaN NaN NaN 17.705 1 15.118 14.618 15.618 -2.5866 0 0 0 0.97444 1 9282 9282 0.69038 0.69038 1 + 17088 21484 11728 11939 20261 20261 -0.15180617356338644 GSSHCCGS 8 Unmodified _GSSHCCGS_ 0 0 0 REV__ENSG00000187173|ENST00000368779|LCE2A REV__ENSG00000187173|ENST00000368779|LCE2A MSMS AL20221201_MKP_PDAC_01 4 369.1229858398438 2 369.120706 736.226858 NaN NaN NaN NaN NaN NaN NaN 22.627 1 19.848 19.348 20.348 -2.7784 0 0 0 0.97444 1 12179 12179 0.69038 0.69038 1 + 17089 21484 11728 11939 20262 20262 -0.15180617356338644 GSSHQLGFWF 10 Unmodified _GSSHQLGFWF_ 0 0 0 ENST00000380834.6_1_2:25044103-25044397:+|nuORF ENST00000380834.6_1_2:25044103-25044397:+|nuORF ENST00000380834.6_1_2:25044103-25044397:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2802124023438 2 583.274898 1164.53524 NaN NaN NaN NaN NaN NaN NaN 73.414 1 72.939 72.439 73.439 -0.47588 0 0 0 0.96627 1 40175 40175 4.3292 0.73274 1 17090 12609 11729 11940 20263 20263 -0.04044311842312709 GSSNAYASSF 10 Unmodified _GSSNAYASSF_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP;nc|ENSG00000197558|A2VEC9-2|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7115783691406 2 495.711796 989.40904 0.35948 0.0001782 -0.30308 -0.00015024 0.056403 2.796E-05 495.71164012766985 39.198 0.24413 39.198 39.077 39.321 0 23 11 3 0 0 0 0.54684 1 20983 20983 13.906 5.1606 1 2012300 17091 16488 11730 11941 20264 20264 -0.08608863138226752 GSSQEDLL 8 Unmodified _GSSQEDLL_ 0 0 0 nc|ENSG00000173926|Q86UD3-2|MARCHF3;ENSG00000173926|ENST00000308660|MARCHF3 nc|ENSG00000173926|Q86UD3-2|MARCHF3 nc|ENSG00000173926|Q86UD3-2|MARCHF3 MSMS AL20221201_MKP_PDAC_01 4 424.7022399902344 2 424.70344 847.392327 NaN NaN NaN NaN NaN NaN NaN 59.756 1 53.641 53.141 54.141 -6.1147 0 0 0 0.62748 1 38396 38396 32.305 3.8186 1 17092 8377 11731 11942 20265 20265 -0.03747364024172839 GSTRRHLLL 9 Unmodified _GSTRRHLLL_ 0 0 0 REV__nc|ENSG00000184182|Q969M7-2|UBE2F REV__nc|ENSG00000184182|Q969M7-2|UBE2F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5494689941406 3 351.548964 1051.62506 NaN NaN NaN NaN NaN NaN NaN 34.031 1 34.06 33.56 34.56 0.028934 0 0 0 0.83812 1 17924 17924 2.9952 0 1 + 17093 29845 11732 11943 20266 20266 0.1013136255696736 GSVAQLLYL 9 Unmodified _GSVAQLLYL_ 0 0 0 REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF REV__ENST00000478112.1_1_10:71211350-71243770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5492553710938 1 963.550959 962.543683 0.45209 0.00043561 0.87705 0.00084508 1.3291 0.0012807 963.551238781066 71.833 0.17607 71.357 71.293 71.469 -0.47609 9 6 2 0 0 0 0.36964 1 39310 39310 13.906 0.86358 1 368030 + 17094 27623 11733 11944 20267 20267 0.060912420743079565 GSVAVVYLLCF 11 Unmodified _GSVAVVYLLCF_ 0 0 0 REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000176925|ENST00000322110|OR51F2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.9053649902344 3 390.879099 1169.61547 1.1651 0.00045543 3.9904 0.0015598 5.1556 0.0020152 390.881939931427 93.717 0.88503 87.542 87.233 88.118 -6.1757 70 52 2 0 0 0 0.30049 1 62190 62190 1.3296 0.11481 1 20227000 + 17095 22950 11734 11945 20268 20268 0.03744413436538707 GSVEEMPGLQ 10 Unmodified _GSVEEMPGLQ_ 0 0 0 REV__nc|ENSG00000130307|Q8N6Y0-2|USHBP1 REV__nc|ENSG00000130307|Q8N6Y0-2|USHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7466430664062 2 523.744782 1045.47501 0.50419 0.00026407 0.64326 0.0003369 1.1474 0.00060097 523.7452327745482 69.435 0.46404 69.435 69.249 69.713 0 66 21 4 0 0 0 0.52888 1 38658 38658 14.838 0 1 3480100 + 17096 19713 11735 11946 20269 20269 -0.04590790287670643 GSVLFILWKT 10 Unmodified _GSVLFILWKT_ 0 0 0 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5657653808594 3 388.56562 1162.67503 0.19214 7.466E-05 0.17819 6.9239E-05 0.37033 0.0001439 388.5656799174313 61.73 0.54948 61.698 61.532 62.082 -0.032787 71 27 5 0 0 0 0.63399 1 33745 33745 5.4027 5.4027 1 140260000 17097 8516 11736 11947 20270 20270 0.10020052442200722 GSVLFILWKT 10 Unmodified _GSVLFILWKT_ 0 0 0 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.9004211425781 3 388.56562 1162.67503 1.5656 0.00060834 -0.10552 -4.1001E-05 1.4601 0.00056734 388.5655581168494 90.6 0.81406 84.425 84.025 84.839 -6.1757 187 48 5 0 0 0 0.63399 2 59641 59641;59779 5.4027 5.4027 1 265020000 17098 8516 11736 11947 20271;20272 20271 0.10020052442200722 GSVLFILWKT 10 Unmodified _GSVLFILWKT_ 0 0 0 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 388.56562 1162.67503 0.70118 0.00027245 0.24348 9.4607E-05 0.94466 0.00036706 388.89996475601373 62.138 0.23792 61.651 61.55 61.788 -0.48764 -0.023464 5.553E-05 NaN 5.4027 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1493900 17099 8516 11736 11947 0.10020052442200722 GSVLFILWKT 10 Unmodified _GSVLFILWKT_ 0 0 0 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 ENSG00000175414|ENST00000310389|ARL10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.56562 1162.67503 0.19214 7.466E-05 0.17819 6.9239E-05 0.37033 0.0001439 388.5656799174313 61.73 0.54948 61.698 61.532 62.082 -0.032787 0.023464 -2.0573E-05 NaN 5.4027 71 27 5 NaN NaN NaN NaN 0 NaN NaN 0 140260000 17100 8516 11736 11947 0.10020052442200722 GSVPVSTF 8 Unmodified _GSVPVSTF_ 0 0 0 REV__SLITRK5|p.L543V|1|0.19|ENSG00000165300|chr13:87677015-87677015|T/G|missense_variant REV__SLITRK5|p.L543V|1|0.19|ENSG00000165300|chr13:87677015-87677015|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2092590332031 2 397.208161 792.401769 NaN NaN NaN NaN NaN NaN NaN 24.46 1 24.459 23.959 24.959 -0.0016766 0 0 0 0.95607 1 12500 12500 9.3474 3.587 1 + 17101 30103 11737 11948 20273 20273 -0.0027355094798622304 GSWHFREK 8 Unmodified _GSWHFREK_ 0 0 0 nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1;ENST00000557688.1_1_14:75130600-75131628:-|nuORF nc|ENSG00000119682|O15033-2|AREL1 nc|ENSG00000119682|O15033-2|AREL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7615966796875 2 523.761958 1045.50936 NaN NaN NaN NaN NaN NaN NaN 28.471 1 28.471 27.971 28.971 0 0 0 0 0.94061 1 14707 14707 12.532 2.4576 1 17102 3453 11738 11949 20274 20274 -0.011571612939178522 GSWRPLGA 8 Unmodified _GSWRPLGA_ 0 0 0 REV__ENSG00000161692|ENST00000315005|DBF4B REV__ENSG00000161692|ENST00000315005|DBF4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2278442382812 2 422.22722 842.439886 0.073069 3.0852E-05 0.90067 0.00038029 0.97374 0.00041114 422.2281287388728 54.98 0.33648 54.98 54.79 55.126 0 35 14 3 0 0 0 0.80676 1 30525 30525 2.5775 0 1 11674000 + 17103 21607 11739 11950 20275 20275 0.012363797573243573 GSYDMVSTLI 10 Unmodified _GSYDMVSTLI_ 0 0 0 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.263427734375 2 543.262807 1084.51106 0.27115 0.00014731 -1.345 -0.00073068 -1.0738 -0.00058337 543.2619253650416 66.022 0.315 66.022 65.88 66.195 0 27 15 2 0 0 0 0.35903 1 36822 36822 24.021 0 1 3254100 17104 5796 11740 11951 20276 20276 -0.02781333110806372 GSYDMVSTLI 10 Unmodified _GSYDMVSTLI_ 0 0 0 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 ENSG00000146809|ENST00000451215|ASB15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 543.262807 1084.51106 0.27115 0.00014731 -1.345 -0.00073068 -1.0738 -0.00058337 543.2619253650416 66.022 0.315 66.022 65.88 66.195 0 0 0 NaN 24.021 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3254100 17105 5796 11740 11951 -0.02781333110806372 GTAEAIFT 8 Unmodified _GTAEAIFT_ 0 0 0 ENSG00000141437|ENST00000269205|SLC25A52 ENSG00000141437|ENST00000269205|SLC25A52 ENSG00000141437|ENST00000269205|SLC25A52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4003295898438 1 809.40396 808.396684 -0.68652 -0.00055567 0.29275 0.00023695 -0.39377 -0.00031872 809.4042028956743 34.55 0.25418 34.55 34.402 34.656 0 19 12 2 0 0 0 0.78849 1 18175 18175 9.3474 0 1 1569700 17106 5329 11741 11952 20277 20277 -0.015178548106064227 GTAEAVYV 8 Unmodified _GTAEAVYV_ 0 0 0 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.4039306640625 1 809.40396 808.396684 -0.68652 -0.00055567 0.29275 0.00023695 -0.39377 -0.00031872 809.4042028956743 34.55 0.25418 34.55 34.402 34.656 0 19 12 2 0 0 0 0.44122 1 18152 18152 40.449 0 1 1569700 17107 3151 11742 11953 20278 20278 -0.015178548106177914 GTAFWFHVPR 10 Unmodified _GTAFWFHVPR_ 0 0 0 REV__nc|ENSG00000106003|Q8NES3-2|LFNG REV__nc|ENSG00000106003|Q8NES3-2|LFNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3140258789062 2 609.314358 1216.61416 0.058151 3.5432E-05 -0.18432 -0.00011231 -0.12617 -7.6876E-05 609.3142103584081 75.807 0.31509 75.807 75.621 75.936 0 23 13 2 0 0 0 0.63399 1 42129 42129 9.3831 2.2814 1 1256000 + 17108 18481 11743 11954 20279 20279 0.014519601826350481 GTAFWFHVPR 10 Unmodified _GTAFWFHVPR_ 0 0 0 REV__nc|ENSG00000106003|Q8NES3-2|LFNG REV__nc|ENSG00000106003|Q8NES3-2|LFNG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 609.314358 1216.61416 0.058151 3.5432E-05 -0.18432 -0.00011231 -0.12617 -7.6876E-05 609.3142103584081 75.807 0.31509 75.807 75.621 75.936 0 0 0 NaN 9.3831 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1256000 + 17109 18481 11743 11954 0.014519601826350481 GTAGAFASQ 9 Unmodified _GTAGAFASQ_ 0 0 0 REV__ENST00000556562.1_1_12:121838015-121854228:+|nuORF REV__ENST00000556562.1_1_12:121838015-121854228:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1925964355469 2 405.193042 808.371532 NaN NaN NaN NaN NaN NaN NaN 53.729 1 53.729 53.229 54.229 0 0 0 0 0.46757 1 29796 29796 16.942 0 1 + 17110 22499 11744 11955 20280 20280 -0.04031909613195239 GTALLTSDVSF 11 Unmodified _GTALLTSDVSF_ 0 0 0 REV__nc|ENSG00000120868|O14727-3|APAF1 REV__nc|ENSG00000120868|O14727-3|APAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7868041992188 2 555.787504 1109.56045 NaN NaN NaN NaN NaN NaN NaN 47.208 1 47.208 46.708 47.708 0 0 0 0 0.86932 1 25839 25839 8.7454 1.4562 1 + 17111 19266 11745 11956 20281 20281 0.010056981696152434 GTAMIFTCFTL 11 Unmodified _GTAMIFTCFTL_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2930908203125 2 602.790678 1203.5668 0.055724 3.359E-05 -1.8418 -0.0011102 -1.7861 -0.0010766 602.7898680978719 68.098 0.35929 68.098 67.971 68.33 0 27 17 2 0 0 0 0.68427 1 37994 37994 5.7319 0.50118 1 708290 17112 5175 11746 11957 20282 20282 -0.02683823194888646 GTANAEDSDRS 11 Unmodified _GTANAEDSDRS_ 0 0 0 ENSG00000225190|ENST00000430334|PLEKHM1 ENSG00000225190|ENST00000430334|PLEKHM1 ENSG00000225190|ENST00000430334|PLEKHM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8282165527344 3 374.826779 1121.45851 NaN NaN NaN NaN NaN NaN NaN 82.969 1 82.472 81.972 82.972 -0.49751 0 0 0 0.9406 1 45419 45419 0.84494 0.068409 1 17113 10582 11747 11958 20283 20283 -0.09736199920075705 GTAWHFTHCC 10 Unmodified _GTAWHFTHCC_ 0 0 0 ENST00000405315.8_2_19:49425745-49425922:+|nuORF ENST00000405315.8_2_19:49425745-49425922:+|nuORF ENST00000405315.8_2_19:49425745-49425922:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.15771484375 3 388.156749 1161.44842 0.46717 0.00018134 1.6473 0.00063941 2.1145 0.00082075 388.49161152077204 48.336 0.19372 47.964 47.867 48.061 -0.37172 10 9 2 0 0 0 0.71123 1 25964 25964 0.69767 0 1 1585100 17114 12921 11748 11959 20284 20284 -0.125847576599881 GTCCRDCTE 9 Unmodified _GTCCRDCTE_ 0 0 0 REV__nc|ENSG00000053747|Q16787-3|LAMA3 REV__nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.1689453125 2 494.170069 986.325586 -0.27291 -0.00013487 -1.6635 -0.00082204 -1.9364 -0.00095691 494.1691152085723 22.367 0.38547 22.367 22.143 22.528 0 29 18 2 0 0 0 0.55775 1 11299 11299 3.9444 1.0552 1 1080800 + 17115 17278 11749 11960 20285 20285 -0.16812382173611695 GTDIFLSLWEI 11 Unmodified _GTDIFLSLWEI_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.3384399414062 2 647.339904 1292.66525 NaN NaN NaN NaN NaN NaN NaN 81.17 1 80.678 80.178 81.178 -0.49247 0 0 0 0.54872 1 44450 44450 22.736 7.898 1 17116 7267 11750 11961 20286 20286 0.030628196461975676 GTDIFLSLWEI 11 Unmodified _GTDIFLSLWEI_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3385009765625 2 647.339904 1292.66525 NaN NaN NaN NaN NaN NaN NaN 80.162 1 80.219 79.719 80.719 0.057587 0 0 0 0.30911 1 44302 44302 32.786 10.049 1 17117 7267 11750 11961 20287 20287 0.030628196461975676 GTDIFLSLWEI 11 Unmodified _GTDIFLSLWEI_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3373413085938 2 647.339904 1292.66525 NaN NaN NaN NaN NaN NaN NaN 80.351 1 80.408 79.908 80.908 0.057587 0 0 0 0.30911 1 44413 44413 32.786 10.049 1 17118 7267 11750 11961 20288 20288 0.030628196461975676 GTDIFLSLWEI 11 Unmodified _GTDIFLSLWEI_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3388061523438 2 647.339904 1292.66525 NaN NaN NaN NaN NaN NaN NaN 80.552 1 80.609 80.109 81.109 0.057587 0 0 0 0.54872 1 44532 44532 22.736 0 1 17119 7267 11750 11961 20289 20289 0.030628196461975676 GTERYSHIVF 10 Unmodified _GTERYSHIVF_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.540283203125 3 403.540134 1207.59857 NaN NaN NaN NaN NaN NaN NaN 18.274 1 18.28 17.78 18.78 0.0060463 0 0 0 0.96981 1 9255 9255 1.9064 0 1 + 17120 19178 11751 11962 20290 20290 0.003076288749298328 GTEYRLTLY 9 Unmodified _GTEYRLTLY_ 0 0 0 nc|ENSG00000114270|Q02388-2|COL7A1;ENSG00000114270|ENST00000681320|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 nc|ENSG00000114270|Q02388-2|COL7A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7633056640625 2 558.290214 1114.56587 -0.79988 -0.00044657 -0.088055 -4.916E-05 -0.88794 -0.00049573 558.7916393524029 32.287 0.17071 32.287 32.204 32.374 0 14 8 2 0 0 0 0.18521 1 16816 16816 11.64 0 1 2656200 17121 3027 11752 11963 20291 20291 0.01317421752082737 GTFKRELLL 9 Unmodified _GTFKRELLL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7738037109375 2 538.826766 1075.63898 0.60483 0.0003259 -0.023617 -1.2725E-05 0.58121 0.00031317 538.8268105164141 53.825 0.19165 53.825 53.685 53.876 0 13 8 2 0 0 0 0.20358 1 29795 29795 6.2058 0.9089 1 701680 17122 16605 11753 11964 20292 20292 0.10418595265377917 GTFSTTEWL 9 Unmodified _GTFSTTEWL_ 0 0 0 REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF REV__ENST00000505973.1_1_2:27805995-27824299:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7820434570312 2 521.248015 1040.48148 0.62179 0.00032411 1.1425 0.00059554 1.7643 0.00091964 521.2482538493375 56.711 0.31767 50.735 50.561 50.879 -5.9769 21 17 2 0 0 0 0.19205 1 36313 36313 14.838 6.245 1 13625000 + 17123 28078 11754 11965 20293 20293 -0.03714529064677663 GTGGEPIKLNT 11 Unmodified _GTGGEPIKLNT_ 0 0 0 REV__nc|ENSG00000089177|Q96L93-2|KIF16B REV__nc|ENSG00000089177|Q96L93-2|KIF16B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.79296875 2 543.793121 1085.57169 NaN NaN NaN NaN NaN NaN NaN 27.325 1 27.325 26.825 27.825 0 0 0 0 0.9372 1 14074 14074 4.5289 1.2476 1 + 17124 29523 11755 11966 20294 20294 0.032325202637593975 GTGLCHRST 9 Unmodified _GTGLCHRST_ 0 0 0 REV__ENST00000484848.5_1_10:102265793-102268345:-|nuORF REV__ENST00000484848.5_1_10:102265793-102268345:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2254638671875 2 466.224351 930.434149 NaN NaN NaN NaN NaN NaN NaN 26.714 1 26.742 26.242 27.242 0.028664 0 0 0 0.79771 1 13865 13865 6.2058 0.97511 1 + 17125 27766 11756 11967 20295 20295 -0.03385086816660987 GTGLGRKPK 9 Unmodified _GTGLGRKPK_ 0 0 0 ENST00000507678.5_1_4:177241184-177241601:+|nuORF ENST00000507678.5_1_4:177241184-177241601:+|nuORF ENST00000507678.5_1_4:177241184-177241601:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.2489318847656 2 457.282526 912.550499 1.1377 0.00052023 -0.99376 -0.00045443 0.1439 6.5802E-05 457.28193678225324 30.485 0.30059 26.988 26.812 27.113 -3.497 24 14 2 0 0 0 0.19891 1 17237 17237 7.2892 1.5288 1 27834000 17126 14544 11757 11968 20296 20296 0.09072599745547905 GTGSAPACRHL 11 Unmodified _GTGSAPACRHL_ 0 0 0 ENST00000301015.13_2_16:88804637-88805031:-|nuORF ENST00000301015.13_2_16:88804637-88805031:-|nuORF ENST00000301015.13_2_16:88804637-88805031:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1798400878906 3 357.17843 1068.51346 1.1374 0.00040627 1.1035 0.00039416 2.241 0.00080043 357.17880210175355 38.503 0.41673 34.134 33.916 34.333 -4.3689 58 26 3 0 0 0 0.6889 1 22854 22854 2.4348 0 1 25454000 17127 11562 11758 11969 20297 20297 -0.018054398625281465 GTGTWGHLSLT 11 Unmodified _GTGTWGHLSLT_ 0 0 0 REV__nc|ENSG00000136827|O14656-2|TOR1A REV__nc|ENSG00000136827|O14656-2|TOR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.1923217773438 3 377.192734 1128.55637 -0.25856 -9.7528E-05 1.0175 0.0003838 0.75896 0.00028627 377.1931461468659 34.058 0.37754 33.867 33.643 34.02 -0.19132 33 14 3 0 0 0 0.7326 1 17849 17849 0.40827 0 1 4874400 + 17128 20184 11759 11970 20298 20298 -0.002763465334282955 GTHTSEHMHLL 11 Unmodified _GTHTSEHMHLL_ 0 0 0 REV__ZNF443|p.R217S|1|0.18|ENSG00000180855|chr19:12431521-12431521|T/G|missense_variant REV__ZNF443|p.R217S|1|0.18|ENSG00000180855|chr19:12431521-12431521|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5371704101562 3 421.536395 1261.58736 NaN NaN NaN NaN NaN NaN NaN 42.077 1 42.068 41.568 42.568 -0.0088196 0 0 0 0.81144 1 22518 22518 11.518 1.9739 1 + 17129 30141 11760 11971 20299 20299 -0.032975164908293664 GTHVKQHY 8 Unmodified _GTHVKQHY_ 0 0 0 REV__ZNF227|p.K798T|1|0.17|ENSG00000131115|chr19:44236823-44236823|A/C|missense_variant REV__ZNF227|p.K798T|1|0.17|ENSG00000131115|chr19:44236823-44236823|A/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2479553222656 2 485.248683 968.482814 NaN NaN NaN NaN NaN NaN NaN 21.416 1 21.416 20.916 21.916 0 0 0 0 0.97348 1 10835 10835 5.7604 1.0044 1 + 17130 19774 11761 11972 20300 20300 -0.0026885018525035775 GTIDILQKVK 10 Unmodified _GTIDILQKVK_ 0 0 0 REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2330627441406 3 372.23253 1113.67576 1.7084 0.00063593 -0.042626 -1.5867E-05 1.6658 0.00062006 372.2324714568796 55.303 0.37907 49.382 49.208 49.587 -5.9211 42 23 2 0 0 0 0.27276 1 35165 35165 19.626 1.2862 1 23010000 + 17131 30130 11762 11973 20301 20301 0.12346847091271229 GTIDVWWLFDD 11 Unmodified _GTIDVWWLFDD_ 0 0 0 nc|ENSG00000074803|Q13621-3|SLC12A1;ENSG00000074803|ENST00000380993|SLC12A1 nc|ENSG00000074803|Q13621-3|SLC12A1 nc|ENSG00000074803|Q13621-3|SLC12A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 683.8193969726562 2 683.819335 1365.62412 NaN NaN NaN NaN NaN NaN NaN 56.556 1 56.487 55.987 56.987 -0.068737 0 0 0 0.93613 1 30767 30767 5.2969 0.39987 1 17132 1136 11763 11974 20302 20302 -0.04406941393312991 GTKEDIIFL 9 Unmodified _GTKEDIIFL_ 0 0 0 REV__ENSG00000040731|ENST00000264463|CDH10 REV__ENSG00000040731|ENST00000264463|CDH10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2908935546875 2 518.289682 1034.56481 1.1943 0.00061899 -0.098256 -5.0925E-05 1.096 0.00056807 518.28960616193 86.86 0.43833 80.684 80.492 80.93 -6.1757 35 23 2 0 0 0 0.022193 1 57353 57353 61.357 3.8861 1 16942000 + 17133 17196 11764 11975 20303 20303 0.04891207383184337 GTKEGRAECRL 11 Unmodified _GTKEGRAECRL_ 0 0 0 ENST00000545932.5_1_12:108956374-108956593:+|nuORF ENST00000545932.5_1_12:108956374-108956593:+|nuORF ENST00000545932.5_1_12:108956374-108956593:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2124328613281 3 407.211911 1218.6139 1.202 0.00048948 0.86239 0.00035118 2.0644 0.00084066 407.21213140633324 30.493 0.45716 26.996 26.736 27.193 -3.497 59 22 3 0 0 0 0.57006 1 17277 17277 12.856 1.2246 1 115100000 17134 15100 11765 11976 20304 20304 0.013341724004703792 GTKEMGRA 8 Unmodified _GTKEMGRA_ 0 0 0 ENST00000176183.5_1_11:639911-640686:+|nuORF ENST00000176183.5_1_11:639911-640686:+|nuORF ENST00000176183.5_1_11:639911-640686:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 425.2174987792969 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 28.492 1 25.344 24.844 25.844 -3.1482 0 0 0 0.95254 1 15900 15900 10.074 0.72649 1 17135 10981 11766 11977 20305 20305 -0.012835877025963782 GTKHEKDTWLY 11 Unmodified _GTKHEKDTWLY_ 0 0 0 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000054690|ENST00000329153|PLEKHH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.3441772460938 2 689.343509 1376.67246 0.53465 0.00036856 0.3053 0.00021046 0.83995 0.00057902 689.3434745534089 46.64 0.21399 46.304 46.19 46.404 -0.33664 22 10 4 0 0 0 0.65846 1 25008 25008 8.1555 4.2111 1 5403400 17136 764 11767 11978 20306 20306 -0.0008044775336202292 GTKRWFAAGL 10 Unmodified _GTKRWFAAGL_ 0 0 0 REV__ENST00000418255.1_1_1:40363463-40364335:+|nuORF REV__ENST00000418255.1_1_1:40363463-40364335:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.1812744140625 3 369.541697 1105.60326 1.7488 0.00064627 0.40265 0.0001488 2.1515 0.00079506 369.5417063985608 20.575 0.2152 17.882 17.762 17.977 -2.693 14 12 2 0 0 0 0.23057 1 10998 10998 5.0475 0.85802 1 2523200 + 17137 26796 11768 11979 20307 20307 0.054685578083763176 GTLAMDTLPD 10 Unmodified _GTLAMDTLPD_ 0 0 0 ENST00000580667.5_1_17:37264974-37309186:-|nuORF;ENST00000461225.5_1_17:37235749-37309234:-|nuORF;nc|ENSG00000161381|Q8IUK5-3|PLXDC1;ENST00000578517.5_1_17:37235696-37309234:-|nuORF;nc|ENSG00000161381|Q8IUK5-2|PLXDC1;ENST00000394318.7_1_17:37235696-37307690:-|nuORF;ENSG00000161381|ENST00000315392|PLXDC1 ENST00000580667.5_1_17:37264974-37309186:-|nuORF ENST00000580667.5_1_17:37264974-37309186:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.776611328125 2 517.247157 1032.47976 NaN NaN NaN NaN NaN NaN NaN 93.55 1 87.375 86.875 87.875 -6.1757 0 0 0 0.76313 1 61926 61926 13.906 1.3745 1 17138 6790 11769 11980 20308 20308 -0.03517906144929839 GTLQIYLL 8 Unmodified _GTLQIYLL_ 0 0 0 TSHZ3-CDH2|1|fusion;nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2 TSHZ3-CDH2|1|fusion TSHZ3-CDH2|1|fusion MSMS AL20221201_MKP_PDAC_01 4 460.7772827148438 2 460.776211 919.537869 NaN NaN NaN NaN NaN NaN NaN 55.53 1 49.609 49.109 50.109 -5.9211 0 0 0 0.45366 1 35360 35360 46.021 0 1 17139 8003 11770 11981 20309 20309 0.07488143562670757 GTLVQDIFTYA 11 Unmodified _GTLVQDIFTYA_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20221201_MKP_PDAC_01 4 614.31591796875 2 614.316428 1226.6183 NaN NaN NaN NaN NaN NaN NaN 78.256 1 72.08 71.58 72.58 -6.1757 0 0 0 0.48869 1 51215 51215 24.991 4.5764 1 17140 6389 11771 11982 20310 20310 0.014059600950758977 GTLVYMKKLL 10 Unmodified _GTLVYMKKLL_ 0 0 0 REV__ENST00000361332.8_1_11:57529520-57529568:+|nuORF REV__ENST00000361332.8_1_11:57529520-57529568:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2394714355469 3 389.238627 1164.69405 NaN NaN NaN NaN NaN NaN NaN 78.69 1 72.514 72.014 73.014 -6.1757 0 0 0 0.7417 1 51524 51524 8.9762 0 1 + 17141 25920 11772 11983 20311 20311 0.11829265741630479 GTLYERGWSK 10 Unmodified _GTLYERGWSK_ 0 0 0 REV__ENST00000493862.5_1_22:38077834-38087340:+|nuORF REV__ENST00000493862.5_1_22:38077834-38087340:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5399169921875 3 399.540134 1195.59857 -0.11151 -4.4553E-05 -0.055443 -2.2152E-05 -0.16695 -6.6705E-05 399.5400183319117 17.275 0.19221 17.28 17.175 17.367 0.0050564 31 14 3 0 0 0 0.67033 1 8701 8701 3.3196 0 1 1744200 + 17142 27927 11773 11984 20312 20312 0.008596288749458836 GTMSTISPS 9 Unmodified _GTMSTISPS_ 0 0 0 nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 880.405517578125 1 880.408059 879.400783 0.12911 0.00011367 -0.40106 -0.0003531 -0.27196 -0.00023943 880.4065686067 50.46 0.23121 50.46 50.35 50.582 0 13 10 2 0 0 0 0.32871 1 27796 27796 15.847 4.2069 1 1973800 17143 3042 11774 11985 20313 20313 -0.04374133379201339 GTNFSTVMHAP 11 Unmodified _GTNFSTVMHAP_ 0 0 0 REV__nc|ENSG00000196792|Q13033-2|STRN3 REV__nc|ENSG00000196792|Q13033-2|STRN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2739868164062 2 581.271498 1160.52844 NaN NaN NaN NaN NaN NaN NaN 42.311 1 42.302 41.802 42.802 -0.0088196 0 0 0 0.76159 1 22650 22650 13.906 4.5229 1 + 17144 29884 11775 11986 20314 20314 -0.04539992785157665 GTNTEKLEKL 10 Unmodified _GTNTEKLEKL_ 0 0 0 ENSG00000188763|ENST00000344575|FZD9 ENSG00000188763|ENST00000344575|FZD9 ENSG00000188763|ENST00000344575|FZD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.81591796875 2 566.814053 1131.61355 0.53223 0.00030168 4.0604 0.0023015 4.5926 0.0026031 566.8163991821275 52.955 0.16104 52.955 52.9 53.061 0 11 7 2 0 0 0 0.4762 1 29381 29381 24.882 11.839 1 1375000 17145 9693 11776 11987 20315 20315 0.053010759522976514 GTPASQLY 8 Unmodified _GTPASQLY_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000101350|O15066-2|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7115783691406 2 418.711068 835.407583 -0.075405 -3.1573E-05 1.0236 0.00042861 0.94823 0.00039703 418.71132457309756 40.078 0.18157 40.078 40.01 40.192 0 12 8 2 0 0 0 0.5953 1 21531 21531 26.341 9.399 1 1502400 17146 1953 11777 11988 20316 20316 -0.016704524363490236 GTPEIGLIE 9 Unmodified _GTPEIGLIE_ 0 0 0 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4990234375 1 928.498589 927.491313 0.53218 0.00049412 -0.051215 -4.7553E-05 0.48096 0.00044657 928.498248377141 66.505 0.44046 66.505 66.26 66.701 0 46 19 3 0 0 0 0.038285 1 37015 37015 50.855 2.5092 1 5659000 17147 16386 11778 11989 20317 20317 0.024666589407047468 GTPEIGLIE 9 Unmodified _GTPEIGLIE_ 0 0 0 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7530822753906 2 464.752933 927.491313 0.7608 0.00035358 -0.32514 -0.00015111 0.43566 0.00020247 464.75272393185753 66.501 0.5079 66.501 66.239 66.747 0 51 22 3 0 0 0 0.06187 1 37103 37103 42.095 6.0504 1 11573000 17148 16386 11778 11989 20318 20318 0.024666589407047468 GTPILHYVL 9 Unmodified _GTPILHYVL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 506.7960815429688 2 506.794935 1011.57532 NaN NaN NaN NaN NaN NaN NaN 98.345 1 92.169 91.669 92.669 -6.1757 0 0 0 0.43505 1 65221 65221 18.135 2.2878 1 17149 6400 11779 11990 20319 20319 0.06999234828265344 GTPKIIHDHF 10 Unmodified _GTPKIIHDHF_ 0 0 0 ENST00000430710.7_1_14:21853502-21853595:-|nuORF ENST00000430710.7_1_14:21853502-21853595:-|nuORF ENST00000430710.7_1_14:21853502-21853595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8760681152344 3 388.876857 1163.60874 -0.018306 -7.1188E-06 -0.050718 -1.9723E-05 -0.069024 -2.6842E-05 388.8768793478594 17.696 0.38969 17.701 17.495 17.885 0.0050564 70 30 5 0 0 0 0.68844 1 8883 8883 4.1895 0 1 5873700 17150 13248 11780 11991 20320 20320 0.033482366001635455 GTPLLLDLLS 10 Unmodified _GTPLLLDLLS_ 0 0 0 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7882080078125 2 521.313158 1040.61176 0.11499 5.9947E-05 -0.35387 -0.00018448 -0.23888 -0.00012453 521.3128719607486 59.965 0.27304 59.474 59.313 59.586 -0.49079 33 13 3 0 0 0 0.23634 1 32547 32547 3.5965 3.5965 1 9721400 + 17151 18923 11781 11992 20321 20321 0.09308066934318049 GTPNDDSDI 9 Unmodified _GTPNDDSDI_ 0 0 0 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.1928100585938 2 467.193436 932.37232 0.31195 0.00014574 -0.57834 -0.0002702 -0.26639 -0.00012446 467.1930084740991 65.69 0.85511 59.515 59.11 59.965 -6.1757 122 49 3 0 0 0 0.58865 1 42863 42863 2.0598 1.2661 1 116380000 17152 3195 11782 11993 20322 20322 -0.09657159754817712 GTPNFCWDHK 10 Unmodified _GTPNFCWDHK_ 0 0 0 nc|ENSG00000138964|Q9HBI0-4|PARVG;ENST00000453888.7_1_22:44568882-44582522:+|nuORF nc|ENSG00000138964|Q9HBI0-4|PARVG nc|ENSG00000138964|Q9HBI0-4|PARVG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1792297363281 3 402.178319 1203.51313 NaN NaN NaN NaN NaN NaN NaN 12.571 1 12.58 12.08 13.08 0.0096512 0 0 0 1.0029 1 6201 6201 0.12286 0 1 17153 13563 11783 11994 20323 20323 -0.08048859582390833 GTPSSSKRV 9 Unmodified _GTPSSSKRV_ 0 0 0 ENST00000377110.7_2_9:73152049-73152109:-|nuORF ENST00000377110.7_2_9:73152049-73152109:-|nuORF ENST00000377110.7_2_9:73152049-73152109:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2656555175781 2 459.753798 917.493044 0.60567 0.00027846 -3.6391 -0.0016731 -3.0334 -0.0013946 459.7520248392748 79.345 0.26115 78.855 78.682 78.943 -0.48932 13 10 2 0 0 0 0.21858 1 43371 43371 1.4819 0.68827 1 467420 17154 12514 11784 11995 20324 20324 0.030997127493378684 GTPVWPDQLHF 11 Unmodified _GTPVWPDQLHF_ 0 0 0 REV__ENST00000511909.5_1_4:122053805-122071269:-|nuORF REV__ENST00000511909.5_1_4:122053805-122071269:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.885498046875 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 15.886 1 13.329 12.829 13.829 -2.557 0 0 0 0.93954 1 8190 8190 2.8433 0.75728 1 + 17155 17262 11785 11996 20325 20325 -0.006117980909721155 GTQLLFVLIR 10 Unmodified _GTQLLFVLIR_ 0 0 0 REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3629150390625 2 580.363516 1158.71248 1.5724 0.00091254 -1.1522 -0.00066871 0.42014 0.00024383 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.72292 1 71744 71744 0.35063 0 1 10927000 + 17156 28335 11786 11997 20326 20326 0.13947143707832765 GTQNDYNY 8 Unmodified _GTQNDYNY_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.6962890625 2 487.696146 973.377739 NaN NaN NaN NaN NaN NaN NaN 22.553 1 22.553 22.053 23.053 0 0 0 0 0.97348 1 11472 11472 5.7604 0 1 + 17157 23799 11787 11998 20327 20327 -0.11001436172341528 GTQRPQCVLC 10 Unmodified _GTQRPQCVLC_ 0 0 0 ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7681274414062 2 552.768068 1103.52158 0.50399 0.00027859 -0.35558 -0.00019655 0.14842 8.204E-05 552.7678993329125 46.661 1.8973 41.58 41.29 43.187 -5.0805 734 186 5 0 0 0 0.48505 1 28689 28689 17.113 0.1706 1 7715199999.999999 17158 10556 11788 11999 20328 20328 -0.026036289373905674 GTSGTSMF 8 Unmodified _GTSGTSMF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.170654296875 2 394.168179 786.321804 1.2506 0.00049296 4.0502 0.0015965 5.3009 0.0020894 394.17029374470474 101.27 0.14566 95.091 95.032 95.178 -6.1757 18 8 3 0 0 0 0.72953 1 67932 67932 14.582 5.2343 1 31791000 17159 1918 11789 12000 20329 20329 -0.0799036061349625 GTSLHPHPF 9 Unmodified _GTSLHPHPF_ 0 0 0 ENST00000496699.1_1_1:117509714-117517097:+|nuORF ENST00000496699.1_1_1:117509714-117517097:+|nuORF ENST00000496699.1_1_1:117509714-117517097:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.8690490722656 2 496.751059 991.487565 0.41572 0.00020651 3.038 0.0015092 3.4538 0.0017157 496.75279101060875 59.39 0.31973 59.39 59.307 59.627 0 16 13 2 0 0 0 0.54444 1 33041 33041 4.756 1.1595 1 1279900 17160 14379 11790 12001 20330 20330 -0.00851966042478125 GTSRPPTPTL 10 Unmodified _GTSRPPTPTL_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2454223632812 2 513.782556 1025.55056 0.28965 0.00014882 1.1097 0.00057012 1.3993 0.00071894 513.7831720545621 58.451 0.19469 58.451 58.34 58.535 0 13 7 2 0 0 0 0.23227 1 32568 32568 6.7232 0.51738 1 862180 17161 1301 11791 12002 20331 20331 0.03880554954912441 GTSYNHIIY 9 Unmodified _GTSYNHIIY_ 0 0 0 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.261474609375 2 534.261456 1066.50836 0.22435 0.00011986 0.3505 0.00018726 0.57485 0.00030712 534.7630159961697 64.714 0.7423 64.714 64.427 65.169 0 66 35 3 0 0 0 0.25681 1 36208 36208 19.257 3.4098 1 1455000 + 17162 20122 11792 12003 20332 20332 -0.02223420453469771 GTTDFFLL 8 Unmodified _GTTDFFLL_ 0 0 0 ENSG00000181499|ENST00000321252|OR6T1 ENSG00000181499|ENST00000321252|OR6T1 ENSG00000181499|ENST00000321252|OR6T1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 913.4677734375 1 913.466561 912.459284 -0.35113 -0.00032074 1.7641 0.0016114 1.413 0.0012907 913.4678073881468 78.703 0.28841 78.217 78.035 78.323 -0.48596 16 10 2 0 0 0 0.44122 1 43086 43086 40.449 8.3316 1 648380 17163 8976 11793 12004 20333 20333 -0.0004470874242770151 GTTHLFYPPR 10 Unmodified _GTTHLFYPPR_ 0 0 0 ENST00000585170.1_1_17:56603775-56604489:-|nuORF ENST00000585170.1_1_17:56603775-56604489:-|nuORF ENST00000585170.1_1_17:56603775-56604489:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.8775939941406 3 396.876857 1187.60874 NaN NaN NaN NaN NaN NaN NaN 5.6065 1 3.1246 2.6246 3.6246 -2.482 0 0 0 0.99897 1 2845 2845 0.77653 0.078866 1 17164 15603 11794 12005 20334 20334 0.022442366001541814 GTTNDYLWTIR 11 Unmodified _GTTNDYLWTIR_ 0 0 0 REV__ENSG00000125780|ENST00000381458|TGM3 REV__ENSG00000125780|ENST00000381458|TGM3 MSMS AL20221201_MKP_PDAC_01 4 670.3342895507812 2 670.335684 1338.65681 NaN NaN NaN NaN NaN NaN NaN 43.673 1 38.908 38.408 39.408 -4.7648 0 0 0 0.75116 1 26559 26559 14.405 4.3315 1 + 17165 19514 11795 12006 20335 20335 0.001032657295354511 GTTPLDMATSW 11 Unmodified _GTTPLDMATSW_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2695922851562 2 590.271164 1178.52777 NaN NaN NaN NaN NaN NaN NaN 19.066 1 19.089 18.589 19.589 0.023106 0 0 0 0.94184 1 9597 9597 1.1933 0.59184 1 17166 2642 11796 12007 20336 20336 -0.054348322248642944 GTTPPESGIF 10 Unmodified _GTTPPESGIF_ 0 0 0 ENSG00000136048|ENST00000258534|DRAM1;nc|ENSG00000136048|Q8N682-2|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 MSMS AL20221201_MKP_PDAC_01 4 503.2483215332031 2 503.248015 1004.48148 NaN NaN NaN NaN NaN NaN NaN 50.994 1 45.345 44.845 45.845 -5.649 0 0 0 0.76313 1 32050 32050 13.906 0 1 17167 4781 11797 12008 20337 20337 -0.020585290646636167 GTTYDLSFV 9 Unmodified _GTTYDLSFV_ 0 0 0 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7413024902344 2 501.742565 1001.47058 NaN NaN NaN NaN NaN NaN NaN 73.409 1 73.409 72.909 73.909 0 0 0 0 0.26667 1 40869 40869 26.884 5.137 1 + 17168 24518 11798 12009 20338 20338 -0.030099314389417486 GTTYPLGYG 9 Unmodified _GTTYPLGYG_ 0 0 0 REV__nc|ENSG00000049540|P15502-7|ELN REV__nc|ENSG00000049540|P15502-7|ELN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2267456054688 2 464.724175 927.433798 0.82517 0.00038348 1.9096 0.00088744 2.7348 0.0012709 464.7251011017223 53.111 0.38118 53.111 52.9 53.281 0 23 17 2 0 0 0 0.17275 1 29448 29448 21.747 5.8995 1 2295200 + 17169 17251 11799 12010 20339 20339 -0.03282183264843752 GTVEGVVFF 9 Unmodified _GTVEGVVFF_ 0 0 0 ENST00000479965.5_1_11:64120415-64123189:+|nuORF ENST00000479965.5_1_11:64120415-64123189:+|nuORF ENST00000479965.5_1_11:64120415-64123189:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.49365234375 1 954.49311 953.485833 0.88279 0.00084261 0.88297 0.00084279 1.7658 0.0016854 954.4940427749192 79.955 0.26351 79.465 79.296 79.56 -0.48932 18 10 2 0 0 0 0.2143 1 43740 43740 21.747 2.3076 1 2085500 17170 14049 11800 12011 20340 20340 0.007229801489074816 GTVEVRALLTW 11 Unmodified _GTVEVRALLTW_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8531494140625 2 622.853512 1243.69247 0.47719 0.00029722 -0.71363 -0.00044449 -0.23644 -0.00014727 622.8533964959953 67.532 0.65311 67.05 66.758 67.411 -0.48218 83 28 4 0 0 0 0.091371 1 36921 36921 45.74 19.472 1 6283000 17171 3285 11801 12012 20341 20341 0.0803734797721063 GTVEVRALLTW 11 Unmodified _GTVEVRALLTW_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8534545898438 2 622.853512 1243.69247 0.82288 0.00051253 0.1746 0.00010875 0.99747 0.00062128 622.8535190102544 67.032 0.64364 67.05 66.713 67.357 0.018028 99 31 4 0 0 0 0.091371 3 36696 36696;36804;36906 45.74 19.472 1 29771000 17172 3285 11801 12012 20342;20343;20344 20342 0.0803734797721063 GTVEVRALLTW 11 Unmodified _GTVEVRALLTW_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8538208007812 2 622.853512 1243.69247 1.2885 0.00080252 -0.60384 -0.00037611 0.68461 0.00042641 622.852956706321 70.715 0.61281 70.751 70.592 71.205 0.035515 61 27 3 0 0 0 0.40509 2 38944 38944;39070 32.037 19.797 1 7603200 17173 3285 11801 12012 20345;20346 20345 0.0803734797721063 GTVEVRALLTW 11 Unmodified _GTVEVRALLTW_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8545532226562 2 622.853512 1243.69247 1.1047 0.00068807 0.36363 0.00022649 1.4683 0.00091456 622.853569331729 71.418 0.55969 71.457 71.208 71.768 0.039024 57 25 3 0 0 0 0.14513 1 39323 39323 45.74 19.472 1 5290400 17174 3285 11801 12012 20347 20347 0.0803734797721063 GTVFLVWTI 9 Unmodified _GTVFLVWTI_ 0 0 0 ENST00000586944.5_1_19:807712-810823:+|nuORF ENST00000586944.5_1_19:807712-810823:+|nuORF ENST00000586944.5_1_19:807712-810823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.296142578125 2 518.29731 1034.58007 0.248 0.00012854 -1.4577 -0.0007555 -1.2097 -0.00062697 518.2963314318827 75.626 0.32587 75.674 75.494 75.82 0.047943 36 14 3 0 0 0 0.06187 1 41667 41667 42.095 9.7891 1 5013700 17175 15632 11802 12013 20348 20348 0.06416118971060314 GTVWQLYEWQQ 11 Unmodified _GTVWQLYEWQQ_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.763427734375 3 479.898098 1436.67246 0.82168 0.00039432 -2.179 -0.0010457 -1.3573 -0.00065137 479.8966173753094 47.704 0.21002 47.704 47.579 47.789 0 23 9 3 0 0 0 0.30551 1 26105 26105 2.6312 0.19645 1 4341200 17176 7520;14803 11803 12014 20349 20349 -0.02840447753396802 GTWKWCTL 8 Unmodified _GTWKWCTL_ 0 0 0 REV__ENST00000378466.7_2_1:2445901-2449610:-|nuORF REV__ENST00000378466.7_2_1:2445901-2449610:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.742919921875 2 497.744388 993.474223 -0.063758 -3.1735E-05 -2.1382 -0.0010643 -2.2019 -0.001096 497.74350532616813 61.525 0.30026 61.036 60.858 61.158 -0.48932 20 13 2 0 0 0 0.79669 1 33522 33522 8.5933 0.68312 1 1347200 + 17177 26265 11804 12015 20350 20350 -0.02277540146087631 GTWRSWWSWPC 11 Unmodified _GTWRSWWSWPC_ 0 0 0 REV__ENST00000443140.5_1_2:220092732-220093771:-|nuORF REV__ENST00000443140.5_1_2:220092732-220093771:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.3219604492188 2 726.319314 1450.62407 0.2057 0.0001494 1.178 0.00085564 1.3837 0.001005 726.3196556426022 79.011 0.60443 78.525 78.265 78.87 -0.48596 58 25 3 0 0 0 0.74157 1 43393 43393 0.35063 0 1 962790 + 17178 26695 11805 12016 20351 20351 -0.0832121987427854 GTWVEADPG 9 Unmodified _GTWVEADPG_ 0 0 0 ENSG00000183196|ENST00000332272|CHST6 ENSG00000183196|ENST00000332272|CHST6 ENSG00000183196|ENST00000332272|CHST6 MSMS AL20221201_MKP_PDAC_01 4 466.2100830078125 2 466.211432 930.408311 NaN NaN NaN NaN NaN NaN NaN 40.137 1 35.608 35.108 36.108 -4.5294 0 0 0 0.46757 1 23933 23933 16.942 0 1 17179 9126 11806 12017 20352 20352 -0.05967657787289227 GTYSSFLQI 9 Unmodified _GTYSSFLQI_ 0 0 0 REV__ENST00000379565.7_1_X:20190943-20193328:-|nuORF REV__ENST00000379565.7_1_X:20190943-20193328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2569580078125 2 508.258382 1014.50221 0.37656 0.00019139 0.14728 7.4855E-05 0.52384 0.00026625 508.2582737020268 79.773 0.54874 79.773 79.5 80.048 0 60 25 3 0 0 0 0.49272 1 44224 44224 7.9102 0 1 2575800 + 17180 26291 11807 12018 20353 20353 -0.004459386849816838 GVAAPLRRL 9 Unmodified _GVAAPLRRL_ 0 0 0 REV__ENST00000409587.5_1_19:40854624-40871810:+|nuORF REV__ENST00000409587.5_1_19:40854624-40871810:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2459716796875 2 476.806168 951.597784 1.104 0.00052638 0.3409 0.00016254 1.4449 0.00068892 476.8062891950466 46.523 0.2232 46.49 46.349 46.572 -0.033417 15 10 2 0 0 0 0.21798 1 24960 24960 2.3027 0 1 835460 + 17181 26693 11808 12019 20354 20354 0.12004879016558334 GVACLKWRM 9 Unmodified _GVACLKWRM_ 0 0 0 REV__ENST00000490889.2_1_3:9404610-9404703:-|nuORF REV__ENST00000490889.2_1_3:9404610-9404703:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.28076171875 2 532.280615 1062.54668 -0.30673 -0.00016326 -0.55779 -0.0002969 -0.86451 -0.00046016 532.2802656417454 17.48 0.14616 17.48 17.38 17.526 0 35 21 2 0 0 0 0.58865 1 8595 8595 2.0598 0.21551 1 845820 + 17182 27883 11809 12020 20355 20355 0.01790470655828358 GVAEAVWPPL 10 Unmodified _GVAEAVWPPL_ 0 0 0 REV__ENST00000467456.1_1_3:49688206-49688659:+|nuORF REV__ENST00000467456.1_1_3:49688206-49688659:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7814331054688 2 519.784567 1037.55458 1.1615 0.00060371 -2.0583 -0.0010699 -0.89689 -0.00046619 519.7829742938211 50.561 0.3247 45.022 44.76 45.085 -5.5391 44 20 3 0 0 0 0.39779 1 31782 31782 21.747 5.5975 1 46649000 + 17183 27433 11810 12021 20356 20356 0.037306444486148393 GVAERYDILL 10 Unmodified _GVAERYDILL_ 0 0 0 nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB nc|ENSG00000127329|P23467|PTPRB nc|ENSG00000127329|P23467|PTPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8192138671875 2 574.819138 1147.62372 0.66726 0.00038355 0.33415 0.00019208 1.0014 0.00057563 574.8192702213397 83.54 0.42924 83.043 82.789 83.219 -0.49751 44 17 3 0 0 0 0.43662 1 45779 45779 22.736 22.736 1 4347000 17184 3998 11811 12022 20357 20357 0.055816836775193224 GVAFGAIF 8 Unmodified _GVAFGAIF_ 0 0 0 REV__ENSG00000136856|ENST00000373371|SLC2A8 REV__ENSG00000136856|ENST00000373371|SLC2A8 MSMS AL20221201_MKP_PDAC_01 4 391.2181396484375 2 391.215789 780.417025 NaN NaN NaN NaN NaN NaN NaN 26.498 1 23.547 23.047 24.047 -2.9511 0 0 0 0.9706 1 14611 14611 6.3541 0 1 + 17185 20188 11812 12023 20358 20358 0.01803360639848961 GVAFHHAG 8 Unmodified _GVAFHHAG_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1986083984375 2 398.198462 794.382371 NaN NaN NaN NaN NaN NaN NaN 33.075 1 32.916 32.416 33.416 -0.15918 0 0 0 0.97444 1 17244 17244 0.79363 0 1 17186 732 11813 12024 20359 20359 -0.02304462448250888 GVAFIKDKVF 10 Unmodified _GVAFIKDKVF_ 0 0 0 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 REV__nc|ENSG00000122550|Q8IXQ5-5|KLHL7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2221374511719 3 375.221853 1122.64373 NaN NaN NaN NaN NaN NaN NaN 21.237 1 21.251 20.751 21.751 0.013796 0 0 0 0.99897 1 10864 10864 0.77653 0 1 + 17187 19348 11814 12025 20360 20360 0.08731479408129417 GVAFVAMTRR 10 Unmodified _GVAFVAMTRR_ 0 0 0 REV__ENSG00000198398|ENST00000354905|TMEM207 REV__ENSG00000198398|ENST00000354905|TMEM207 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3087158203125 2 554.308218 1106.60188 0.0096324 5.3393E-06 0.28274 0.00015672 0.29237 0.00016206 554.3085505575328 30.741 0.25524 30.771 30.649 30.904 0.030106 18 10 2 0 0 0 0.70951 1 16106 16106 1.8442 1.1539 1 797770 + 17188 24016 11815 12026 20361 20361 0.052846004479533804 GVAFVCAF 8 Unmodified _GVAFVCAF_ 0 0 0 ENSG00000104524|ENST00000495276|PYCR3;nc|ENSG00000104524|Q53H96-2|PYCR3 ENSG00000104524|ENST00000495276|PYCR3 ENSG00000104524|ENST00000495276|PYCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.202880859375 2 407.201825 812.389096 NaN NaN NaN NaN NaN NaN NaN 20.256 1 20.266 19.766 20.766 0.010553 0 0 0 0.97444 1 10326 10326 2.8892 2.0956 1 17189 2214 11816 12027 20362 20362 -0.02460285611891777 GVAGEPGRDGL 11 Unmodified _GVAGEPGRDGL_ 0 0 0 CON__P04258 CON__P04258 CON__P04258 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2622680664062 2 514.261988 1026.50942 NaN NaN NaN NaN NaN NaN NaN 16.762 1 16.763 16.263 17.263 0.0010548 0 0 0 0.94184 1 8286 8286 1.1933 0.12188 1 + 17190 164 11817 12028 20363 20363 -0.0027720608457002527 GVAGGYQLQQA 11 Unmodified _GVAGGYQLQQA_ 0 0 0 REV__ENST00000527638.1_1_11:1312411-1330818:-|nuORF REV__ENST00000527638.1_1_11:1312411-1330818:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.278076171875 2 546.277638 1090.54072 NaN NaN NaN NaN NaN NaN NaN 19.71 1 19.718 19.218 20.218 0.0078487 0 0 0 0.93933 1 10034 10034 2.9952 0.26005 1 + 17191 17639 11818 12029 20364 20364 -0.0009263305046260939 GVAGHRKA 8 Unmodified _GVAGHRKA_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.5067138671875 2 398.232836 794.45112 1.2499 0.00049775 -0.59657 -0.00023757 0.65331 0.00026017 398.2324382660861 20.18 0.50563 17.524 17.312 17.818 -2.6564 65 32 3 0 0 0 8.7369 1 10810 10810 14.582 4.3983 1 11839000 17192 4224 11819 12030 20365 20365 0.04567201851455138 GVAGYYKEK 9 Unmodified _GVAGYYKEK_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7665710449219 2 507.766374 1013.5182 NaN NaN NaN NaN NaN NaN NaN 18.498 1 18.521 18.021 19.021 0.023106 0 0 0 0.84564 1 9279 9279 2.0598 0.21551 1 + 17193 21279 11820 12031 20366 20366 0.01197767551900597 GVAHNVKAM 9 Unmodified _GVAHNVKAM_ 0 0 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7462463378906 2 463.747462 925.480371 NaN NaN NaN NaN NaN NaN NaN 38.128 1 37.856 37.356 38.356 -0.27133 0 0 0 0.6032 1 20064 20064 12.532 0 1 17194 472 11821 12032 20367 20367 0.014649780854483652 GVAITFEP 8 Unmodified _GVAITFEP_ 0 0 0 nc|ENSG00000067191|Q02641-2|CACNB1;nc|ENSG00000067191|Q02641-3|CACNB1;ENSG00000067191|ENST00000394303|CACNB1;ENST00000536613.6_1_17:37342683-37349731:-|nuORF nc|ENSG00000067191|Q02641-2|CACNB1 nc|ENSG00000067191|Q02641-2|CACNB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.22265625 2 417.223811 832.433069 NaN NaN NaN NaN NaN NaN NaN 19.716 1 19.716 19.216 20.216 0 0 0 0 0.97444 1 9881 9881 2.8892 0 1 17195 953 11822 12033 20368 20368 0.010150220860850823 GVAITFTS 8 Unmodified _GVAITFTS_ 0 0 0 REV__nc|ENSG00000148120|Q8N6M6-3|AOPEP REV__nc|ENSG00000148120|Q8N6M6-3|AOPEP MSMS AL20221201_MKP_PDAC_01 4 398.2178344726562 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 24.262 1 21.435 20.935 21.935 -2.8273 0 0 0 0.97348 1 13196 13196 5.7604 0 1 + 17196 20927 11823 12034 20369 20369 0.011987355690393997 GVALGHLK 8 Unmodified _GVALGHLK_ 0 0 0 ENSG00000283199|ENST00000636427|C13orf46 ENSG00000283199|ENST00000636427|C13orf46 ENSG00000283199|ENST00000636427|C13orf46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.7479553222656 2 397.747788 793.481023 NaN NaN NaN NaN NaN NaN NaN 18.171 1 18.171 17.671 18.671 0 0 0 0 0.97444 1 9014 9014 2.8892 2.0956 1 17197 10950 11824 12035 20370 20370 0.07602140796802814 GVALSLFTQL 10 Unmodified _GVALSLFTQL_ 0 0 0 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.8060302734375 2 524.8055 1047.59645 0.54346 0.00028521 0.20794 0.00010913 0.7514 0.00039434 524.805842542442 61.393 0.22176 61.393 61.254 61.476 0 16 9 2 0 0 0 0.60623 1 34242 34242 10.824 0.64053 1 986720 + 17198 20912 11825 12036 20371 20371 0.07455200137133033 GVAMRLAGSLT 11 Unmodified _GVAMRLAGSLT_ 0 0 0 ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3;ENST00000478085.5_1_22:40800171-40802852:+|nuORF ENSG00000100359|ENST00000248929|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2025451660156 3 359.202465 1074.58556 2.0845 0.00074875 -1.4706 -0.00052824 0.61389 0.00022051 359.20202539733987 47.758 0.53255 42.524 42.26 42.793 -5.2339 96 31 4 0 0 0 0.71728 1 29815 29815 2.6312 1.4164 1 52647000 17199 1805 11826 12037 20372 20372 0.051254744912057504 GVAMTNLPGI 10 Unmodified _GVAMTNLPGI_ 0 0 0 nc|ENSG00000015520|Q9UHC9-4|NPC1L1;nc|ENSG00000015520|Q9UHC9-2|NPC1L1;ENSG00000015520|ENST00000381160|NPC1L1;nc|ENSG00000015520|Q9UHC9|NPC1L1 nc|ENSG00000015520|Q9UHC9-4|NPC1L1 nc|ENSG00000015520|Q9UHC9-4|NPC1L1 MSMS AL20221201_MKP_PDAC_01 4 486.7635498046875 2 486.762778 971.511002 NaN NaN NaN NaN NaN NaN NaN 81.89 1 75.714 75.214 76.214 -6.1757 0 0 0 0.19054 1 53771 53771 43.858 11.553 1 17200 497 11827 12038 20373 20373 0.024107116798290917 GVAPLPFT 8 Unmodified _GVAPLPFT_ 0 0 0 REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 802.8873901367188 1 801.450517 800.44324 0.43035 0.0003449 0.14374 0.0001152 0.57408 0.0004601 801.4505062643624 79.477 0.22755 79.532 79.445 79.672 0.054977 14 8 2 0 0 0 0.80975 1 43868 43868 0.79363 0 1 1735300 + 17201 20522 11828 12039 20374 20374 0.0350362981133685 GVAPPKSGKM 10 Unmodified _GVAPPKSGKM_ 0 0 0 ENST00000606725.5_1_19:19414686-19431305:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;ENSG00000105705|ENST00000247001|SUGP1 ENST00000606725.5_1_19:19414686-19431305:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.2727966308594 2 486.27077 970.526987 NaN NaN NaN NaN NaN NaN NaN 20.15 1 17.494 16.994 17.994 -2.6564 0 0 0 0.76313 1 10720 10720 13.906 1.3745 1 17202 2356 11829 12040 20375 20375 0.040544179167454786 GVAQHIQEA 9 Unmodified _GVAQHIQEA_ 0 0 0 ENST00000006053.6_2_16:57418537-57418765:+|nuORF ENST00000006053.6_2_16:57418537-57418765:+|nuORF ENST00000006053.6_2_16:57418537-57418765:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7468872070312 2 476.745973 951.477394 NaN NaN NaN NaN NaN NaN NaN 21.308 1 21.308 20.808 21.808 0 0 0 0 0.6306 1 10771 10771 11.64 0 1 17203 10963 11830 12041 20376 20376 -0.000285737677245379 GVARTWSWL 9 Unmodified _GVARTWSWL_ 0 0 0 REV__ENST00000478241.6_2_12:56224399-56224693:+|nuORF REV__ENST00000478241.6_2_12:56224399-56224693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.287353515625 2 538.287808 1074.56106 0.25639 0.00013801 0.26524 0.00014278 0.52164 0.00028079 538.2872989380402 88.542 0.35448 88.542 88.383 88.738 0 24 17 2 0 0 0 0.58466 1 48977 48977 2.3027 0 1 442260 + 17204 27627 11831 12042 20377 20377 0.026765823999767235 GVASKLSREV 10 Unmodified _GVASKLSREV_ 0 0 0 REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF REV__ENST00000503611.5_1_4:159092441-159092582:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3035888671875 2 523.303655 1044.59276 0.61961 0.00032424 -0.54447 -0.00028492 0.075139 3.932E-05 523.3030801976204 90.745 0.41172 90.781 90.488 90.9 0.036499 24 14 2 0 0 0 0.71123 1 50453 50453 1.6526 0.32309 1 4569500 + 17205 28041 11832 12043 20378 20378 0.07224530363282611 GVASRFHV 8 Unmodified _GVASRFHV_ 0 0 0 ENST00000507944.5_1_3:98241389-98241692:-|nuORF ENST00000507944.5_1_3:98241389-98241692:-|nuORF ENST00000507944.5_1_3:98241389-98241692:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7599182128906 2 436.740494 871.466435 0.83078 0.00036283 1.4234 0.00062165 2.2542 0.00098448 436.74123746107784 68.824 0.58801 68.849 68.479 69.067 0.025146 55 27 4 0 0 0 8.7369 1 37888 37888 5.2307 2.3415 1 19595000 17206 14549 11833 12044 20379 20379 0.02556068648652854 GVASTVHL 8 Unmodified _GVASTVHL_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130;SAP130|p.V767Wfs*18|1|0.09|ENSG00000136715|chr2:127955082-127955082|C/-|frameshift_variant nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2216796875 2 392.221603 782.428653 NaN NaN NaN NaN NaN NaN NaN 28.619 1 28.619 28.119 29.119 0 0 0 0 0.95201 1 14791 14791 10.183 0 1 17207 4847 11834 12045 20380 20380 0.028735576631788717 GVATLLYMIL 10 Unmodified _GVATLLYMIL_ 0 0 0 REV__ENSG00000136939|ENST00000259466|OR1L4 REV__ENSG00000136939|ENST00000259466|OR1L4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.739501953125 2 547.319928 1092.6253 -0.17888 -9.7904E-05 -0.29391 -0.00016086 -0.47279 -0.00025877 547.3204902578705 69.551 0.39281 69.072 68.81 69.203 -0.47903 33 16 3 0 0 0 0.23117 1 37967 37967 11.64 0.81637 1 1771300 + 17208 20203 11835 12046 20381 20381 0.0826960144190707 GVAWEKYCQR 10 Unmodified _GVAWEKYCQR_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8704223632812 3 413.869485 1238.58663 NaN NaN NaN NaN NaN NaN NaN 29.478 1 29.478 28.978 29.978 0 0 0 0 0.98914 1 15270 15270 0.77653 0.078866 1 17209 5556 11836 12047 20382 20382 -0.023123111398945184 GVAWGTDSCYI 11 Unmodified _GVAWGTDSCYI_ 0 0 0 REV__ENST00000498283.1_1_7:102100038-102105283:-|nuORF REV__ENST00000498283.1_1_7:102100038-102105283:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.175048828125 3 391.174463 1170.50156 0.0038879 1.5209E-06 1.5696 0.00061398 1.5735 0.0006155 391.1749466923937 38.994 0.25055 38.707 38.562 38.812 -0.28687 13 10 2 0 0 0 0.70701 1 20576 20576 1.4551 0 1 2767600 + 17210 21577 11837 12048 20383 20383 -0.07687101396345497 GVAYLGGAPHF 11 Unmodified _GVAYLGGAPHF_ 0 0 0 REV__nc|ENSG00000085433|O94967-2|WDR47 REV__nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5229187011719 3 363.522303 1087.54508 1.2727 0.00046264 0.27059 9.8365E-05 1.5433 0.00056101 363.52229801584446 40.562 0.43684 36.032 35.742 36.179 -4.5294 44 26 2 0 0 0 0.61011 1 24204 24204 12.175 12.175 1 11561000 + 17211 17749 11838 12049 20384 20384 0.00480876163078392 GVAYLGGAPHF 11 Unmodified _GVAYLGGAPHF_ 0 0 0 REV__nc|ENSG00000085433|O94967-2|WDR47 REV__nc|ENSG00000085433|O94967-2|WDR47 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 363.522303 1087.54508 1.2727 0.00046264 0.27059 9.8365E-05 1.5433 0.00056101 363.52229801584446 40.562 0.43684 36.032 35.742 36.179 -4.5294 0.10251 0.00026677 NaN 12.175 44 26 2 NaN NaN NaN NaN 0 NaN NaN 0 11561000 + 17212 17749 11838 12049 0.00480876163078392 GVCAGDEE 8 Unmodified _GVCAGDEE_ 0 0 0 REV__ENST00000476881.2_1_7:100174203-100174533:-|nuORF REV__ENST00000476881.2_1_7:100174203-100174533:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.8144226074219 2 390.147443 778.280334 NaN NaN NaN NaN NaN NaN NaN 14.743 1 12.24 11.74 12.74 -2.5029 0 0 0 0.97444 1 7510 7510 2.5775 0 1 + 17213 27601 11839 12050 20385 20385 -0.11767541372819323 GVCCAPPI 8 Unmodified _GVCCAPPI_ 0 0 0 ENST00000393640.8_1_16:70415384-70415504:-|nuORF ENST00000393640.8_1_16:70415384-70415504:-|nuORF ENST00000393640.8_1_16:70415384-70415504:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1807250976562 2 380.180035 758.345517 NaN NaN NaN NaN NaN NaN NaN 14.979 1 14.979 14.479 15.479 0 0 0 0 0.97444 1 7173 7173 0.79363 0 1 17214 12710 11840 12051 20386 20386 -0.04332218380670838 GVCCKKMK 8 Unmodified _GVCCKKMK_ 0 0 0 REV__ENSG00000125903|ENST00000246105|DEFB129 REV__ENSG00000125903|ENST00000246105|DEFB129 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7298583984375 2 448.729369 895.444185 0.4298 0.00019287 0.13304 5.9698E-05 0.56284 0.00025256 448.72927243433264 84.88 0.4177 84.378 84.112 84.53 -0.5015 31 17 2 0 0 0 0.80975 1 46472 46472 0.79363 0 1 915610 + 17215 19528 11841 12052 20387 20387 -0.007719384072856883 GVCCSWRQN 9 Unmodified _GVCCSWRQN_ 0 0 0 nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-1|RORA nc|ENSG00000069667|P35398-1|RORA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.4849243164062 3 351.484866 1051.43277 NaN NaN NaN NaN NaN NaN NaN 15.45 1 15.45 14.95 15.95 0 0 0 0 0.85737 1 7443 7443 0.26902 0 1 17216 16045 11842 12053 20388 20388 -0.09089044177062533 GVCDVEEPYNL 11 Unmodified _GVCDVEEPYNL_ 0 0 0 REV__CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant REV__CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2752685546875 2 619.273903 1236.53325 1.1598 0.00071823 -0.055318 -3.4257E-05 1.1045 0.00068397 619.2741170968189 95.679 0.62506 89.503 89.071 89.696 -6.1757 85 37 3 0 0 0 0.63851 1 63350 63350 9.3831 1.473 1 46347000 + 17217 16760 11843 12054 20389 20389 -0.07555153433054329 GVCFWLAYR 9 Unmodified _GVCFWLAYR_ 0 0 0 REV__ENST00000599680.1_1_19:50162907-50164763:-|nuORF REV__ENST00000599680.1_1_19:50162907-50164763:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.1869506835938 3 372.188267 1113.54297 NaN NaN NaN NaN NaN NaN NaN 30.77 1 30.8 30.3 31.3 0.030106 0 0 0 0.7453 1 16098 16098 4.897 2.811 1 + 17218 19545 11844 12055 20390 20390 -0.009258758463829508 GVCGFRGG 8 Unmodified _GVCGFRGG_ 0 0 0 ENSG00000196224|ENST00000399685|KRTAP5-3 ENSG00000196224|ENST00000399685|KRTAP5-3 ENSG00000196224|ENST00000399685|KRTAP5-3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.8459167480469 2 376.679048 751.343543 1.1445 0.0004311 -0.7484 -0.0002819 0.39608 0.0001492 376.6788647586698 18.175 0.078188 15.553 15.515 15.594 -2.6215 12 8 2 0 0 0 8.7369 1 9570 9570 0.69038 0 1 1402400 17219 9781 11845 12056 20391 20391 -0.04207511074253034 GVCGGDSI 8 Unmodified _GVCGGDSI_ 0 0 0 REV__ENST00000366928.9_1_1:219347210-219347294:+|nuORF REV__ENST00000366928.9_1_1:219347210-219347294:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 353.8539733886719 2 354.155071 706.29559 NaN NaN NaN NaN NaN NaN NaN 15.014 1 12.486 11.986 12.986 -2.5273 0 0 0 0.97444 1 7669 7669 2.8892 0.31174 1 + 17220 25967 11846 12057 20392 20392 -0.06930629784983466 GVCHKWNL 8 Unmodified _GVCHKWNL_ 0 0 0 REV__nc|ENSG00000163867|O95789-5|ZMYM6 REV__nc|ENSG00000163867|O95789-5|ZMYM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7406616210938 2 478.742179 955.469806 0.27246 0.00013044 -2.8638 -0.001371 -2.5913 -0.0012406 478.74076545206293 63.515 0.26054 63.515 63.472 63.732 0 17 11 2 0 0 0 0.65867 1 35496 35496 20.871 0 1 653490 + 17221 21826 11847 12058 20393 20393 -0.009710045690098923 GVCHKWNL 8 Unmodified _GVCHKWNL_ 0 0 0 REV__nc|ENSG00000163867|O95789-5|ZMYM6 REV__nc|ENSG00000163867|O95789-5|ZMYM6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 478.742179 955.469806 0.27246 0.00013044 -2.8638 -0.001371 -2.5913 -0.0012406 478.74076545206293 63.515 0.26054 63.515 63.472 63.732 0 0 0 NaN 20.871 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 653490 + 17222 21826 11847 12058 -0.009710045690098923 GVCKLVGG 8 Unmodified _GVCKLVGG_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS;NRROS|p.G133Afs*12|1|0.06|ENSG00000174004|chr3:196660039-196660039|G/-|frameshift_variant ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.7057495117188 2 366.707274 731.399995 0.13089 4.7997E-05 -3.1015 -0.0011374 -2.9706 -0.0010894 366.7055401054467 75.844 0.35129 75.892 75.686 76.037 0.047943 21 15 2 0 0 0 0.80143 1 41850 41850 5.7604 0.52976 1 2196700 17223 8383 11848 12059 20394 20394 0.023551167624077607 GVCKVVWRQ 9 Unmodified _GVCKVVWRQ_ 0 0 0 ENST00000378863.8_1_20:5986742-5986787:+|nuORF ENST00000378863.8_1_20:5986742-5986787:+|nuORF ENST00000378863.8_1_20:5986742-5986787:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.79833984375 2 537.797486 1073.58042 NaN NaN NaN NaN NaN NaN NaN 20.431 1 20.442 19.942 20.942 0.010553 0 0 0 0.84564 1 10420 10420 2.0598 0.40713 1 17224 12554 11849 12060 20395 20395 0.04657215419229033 GVCMKAVC 8 Unmodified _GVCMKAVC_ 0 0 0 ENSG00000183571|ENST00000535714|PGPEP1L;nc|ENSG00000183571|A6NFU8|PGPEP1L ENSG00000183571|ENST00000535714|PGPEP1L ENSG00000183571|ENST00000535714|PGPEP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.6882629394531 2 405.68717 809.359787 NaN NaN NaN NaN NaN NaN NaN 14.593 1 14.562 14.062 15.062 -0.030868 0 0 0 0.97444 1 7110 7110 0.79363 0.79363 1 17225 9161 11850 12061 20396 20396 -0.05251889224041406 GVCNEMWPCH 10 Unmodified _GVCNEMWPCH_ 0 0 0 REV__ENST00000467312.1_1_9:131483560-131485040:-|nuORF REV__ENST00000467312.1_1_9:131483560-131485040:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.4874572753906 3 392.485878 1174.43581 NaN NaN NaN NaN NaN NaN NaN 21.451 1 21.451 20.951 21.951 0 0 0 0 1.0019 1 10855 10855 0.15932 0.064481 1 + 17226 27430 11851 12062 20397 20397 -0.14443537114561877 GVCNHAFHFH 10 Unmodified _GVCNHAFHFH_ 0 0 0 LASP1-RBX1|1|fusion;ENSG00000100387|ENST00000216225|RBX1 LASP1-RBX1|1|fusion LASP1-RBX1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1749267578125 3 390.17502 1167.50323 -0.56312 -0.00021971 -0.6629 -0.00025865 -1.226 -0.00047836 390.17491709838106 26.411 0.39592 26.411 26.283 26.679 0 38 18 3 0 0 0 0.68719 1 13693 13693 2.086 0.89267 1 3492800 17227 15976 11852 12063 20398 20398 -0.07382002797112364 GVCNMYRK 8 Unmodified _GVCNMYRK_ 0 0 0 ENSG00000168930|ENST00000329758|TRIM49;ENSG00000204449|ENST00000448984|TRIM49C ENSG00000168930|ENST00000329758|TRIM49 ENSG00000168930|ENST00000329758|TRIM49 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7327575683594 2 485.733497 969.452441 NaN NaN NaN NaN NaN NaN NaN 17.962 1 17.962 17.462 18.462 0 0 0 0 0.97444 1 8896 8896 0.79363 0 1 17228 7817 11853 12064 20399 20399 -0.03350668166308424 GVCPPPCF 8 Unmodified _GVCPPPCF_ 0 0 0 ENST00000259006.7_2_17:61775487-61775829:-|nuORF ENST00000259006.7_2_17:61775487-61775829:-|nuORF ENST00000259006.7_2_17:61775487-61775829:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.1812744140625 2 410.180035 818.345517 NaN NaN NaN NaN NaN NaN NaN 21.585 1 18.85 18.35 19.35 -2.7348 0 0 0 0.97444 1 11575 11575 2.8892 2.0956 1 17229 11210 11854 12065 20400 20400 -0.07092218380671511 GVCRVAQP 8 Unmodified _GVCRVAQP_ 0 0 0 ENST00000484760.1_1_10:79773365-79779077:-|nuORF ENST00000484760.1_1_10:79773365-79779077:-|nuORF ENST00000484760.1_1_10:79773365-79779077:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2204284667969 2 415.22108 828.427607 0.19117 7.9379E-05 -1.5088 -0.00062649 -1.3176 -0.00054711 415.2204489781835 47.343 0.34737 47.343 47.103 47.45 0 25 15 2 0 0 0 0.80676 1 25866 25866 2.5775 1.7838 1 4623700 17230 14159 11855 12066 20401 20401 0.006530200226279703 GVCRVAQP 8 Unmodified _GVCRVAQP_ 0 0 0 ENST00000484760.1_1_10:79773365-79779077:-|nuORF ENST00000484760.1_1_10:79773365-79779077:-|nuORF ENST00000484760.1_1_10:79773365-79779077:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 415.22108 828.427607 0.63447 0.00026345 -1.7816 -0.00073975 -1.1471 -0.0004763 415.220119287143 47.562 0.242 47.209 47.105 47.347 -0.3526 -0.049786 -0.00014793 NaN 2.5775 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4372500 17231 14159 11855 12066 0.006530200226279703 GVCSRGMQFNM 11 Unmodified _GVCSRGMQFNM_ 0 0 0 REV__ENST00000358485.8_2_2:202137647-202139632:+|nuORF REV__ENST00000358485.8_2_2:202137647-202139632:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.514404296875 3 410.512316 1228.51512 NaN NaN NaN NaN NaN NaN NaN 18.657 1 16.036 15.536 16.536 -2.6215 0 0 0 0.94165 1 9841 9841 0.45452 0 1 + 17232 25878 11856 12067 20402 20402 -0.08999890160430368 GVCVMRRQLL 10 Unmodified _GVCVMRRQLL_ 0 0 0 REV__ENST00000261405.9_1_12:6103333-6103640:-|nuORF REV__ENST00000261405.9_1_12:6103333-6103640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.832763671875 2 587.831003 1173.64745 0.45355 0.00026661 1.5736 0.00092502 2.0272 0.0011916 587.8319659189883 62.843 0.29755 62.357 62.244 62.542 -0.48617 33 14 3 0 0 0 0.68719 1 34356 34356 4.3292 2.485 1 12204000 + 17233 24982 11857 12068 20403 20403 0.06757502638697588 GVDCGTEETSL 11 Unmodified _GVDCGTEETSL_ 0 0 0 nc|ENSG00000101298|O15079|SNPH;ENSG00000101298|ENST00000381867|SNPH nc|ENSG00000101298|O15079|SNPH nc|ENSG00000101298|O15079|SNPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7350463867188 2 555.734611 1109.45467 -0.014426 -8.0172E-06 -0.47688 -0.00026502 -0.49131 -0.00027304 555.7343879247503 24.941 0.87661 24.941 24.251 25.128 0 151 65 3 0 0 0 0.064513 2 12717 12619;12717 47.749 3.8904 1 3857400 17234 1942 11858 12069 20404;20405 20405 -0.09568005738151442 GVDDNKFLF 9 Unmodified _GVDDNKFLF_ 0 0 0 REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7640380859375 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 19.235 1 19.258 18.758 19.758 0.023106 0 0 0 0.84369 1 9688 9688 2.3027 0.24298 1 + 17235 23201 11859 12070 20406 20406 -0.011505363107289668 GVDDSVVQFH 10 Unmodified _GVDDSVVQFH_ 0 0 0 ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.1759338378906 3 368.176972 1101.50909 -0.0064636 -2.3798E-06 -1.7056 -0.00062796 -1.7121 -0.00063034 368.1762802197519 16.695 0.1916 16.701 16.515 16.707 0.0050564 19 10 2 0 0 0 0.70951 1 8381 8381 0.77653 0.078866 1 481510 17236 1455 11860 12071 20407 20407 -0.0376062580442067 GVDEDYVWMF 10 Unmodified _GVDEDYVWMF_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.7643737792969 3 420.846235 1259.51688 -0.20624 -8.6797E-05 1.0313 0.00043403 0.82508 0.00034723 420.8468692228403 36.078 0.28152 36.103 35.949 36.23 0.024971 27 12 3 0 0 0 0.24005 1 19018 19018 0.15932 0.15932 1 7000400 + 17237 17601 11861 12072 20408 20408 -0.10250234599175201 GVDEDYVWMF 10 Unmodified _GVDEDYVWMF_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.847900390625 3 420.846235 1259.51688 1.3221 0.00055641 1.5755 0.00066304 2.8976 0.0012195 420.8468641553542 40.74 0.41586 36.21 36.016 36.432 -4.5294 62 25 5 0 0 0 0.68719 1 24454 24454 2.086 0 1 18501000 + 17238 17601 11861 12072 20409 20409 -0.10250234599175201 GVDEPVQVVYN 11 Unmodified _GVDEPVQVVYN_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8721618652344 3 406.871549 1217.59282 -0.40626 -0.0001653 0.91774 0.0003734 0.51148 0.0002081 406.8718952777623 23.889 0.28095 23.889 23.714 23.995 0 31 13 3 0 0 0 0.73115 1 12157 12157 0.45452 0.1855 1 1022000 + 17239 17565 11862 12073 20410 20410 -0.007275144273535261 GVDEPVQVVYN 11 Unmodified _GVDEPVQVVYN_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8714904785156 3 406.871549 1217.59282 -0.55189 -0.00022455 0.5423 0.00022065 -0.0095869 -3.9006E-06 406.87129494107313 26.045 0.22158 26.045 25.904 26.125 0 14 10 2 0 0 0 0.73115 1 13365 13365 0.45452 0 1 875530 + 17240 17565 11862 12073 20411 20411 -0.007275144273535261 GVDGAGGNCMT 11 Unmodified _GVDGAGGNCMT_ 0 0 0 REV__ENSG00000182095|ENST00000430969|TNRC18 REV__ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.1915588378906 2 491.191859 980.369165 0.79712 0.00039154 -2.3976 -0.0011777 -1.6004 -0.00078613 491.19063762091236 57.782 0.31844 51.755 51.535 51.853 -6.0275 22 17 2 0 0 0 0.65846 1 36925 36925 8.1555 2.3951 1 23661000 + 17241 23240 11863 12074 20412 20412 -0.12180449404797855 GVDGECVEEY 10 Unmodified _GVDGECVEEY_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.236328125 2 550.216054 1098.41756 NaN NaN NaN NaN NaN NaN NaN 18.542 1 18.542 18.042 19.042 0 0 0 0 0.98914 1 9226 9226 1.8442 1.0506 1 + 17242 19632 11864 12075 20413 20413 -0.12771677283922145 GVDGPPAPR 9 Unmodified _GVDGPPAPR_ 0 0 0 ENST00000307076.8_1_3:52563277-52568745:-|nuORF ENST00000307076.8_1_3:52563277-52568745:-|nuORF ENST00000307076.8_1_3:52563277-52568745:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 865.45263671875 1 865.452642 864.445365 0.59398 0.00051406 -1.4013 -0.0012127 -0.80731 -0.00069868 865.4517770818765 101.56 0.084229 95.384 95.33 95.414 -6.1757 5 3 2 0 0 0 0.49272 1 68158 68158 7.9102 7.9102 1 4618700 17243 11634 11865 12076 20414 20414 0.007720585491483689 GVDICVPL 8 Unmodified _GVDICVPL_ 0 0 0 REV__ENSG00000082212|ENST00000321341|ME2 REV__ENSG00000082212|ENST00000321341|ME2 MSMS AL20221201_MKP_PDAC_01 4 408.234130859375 2 408.220214 814.425876 NaN NaN NaN NaN NaN NaN NaN 23.342 1 20.563 20.063 21.063 -2.7784 0 0 0 0.95201 1 12629 12629 10.183 0.83596 1 + 17244 17704 11866 12077 20415 20415 0.011239662140155815 GVDIVMNHHL 10 Unmodified _GVDIVMNHHL_ 0 0 0 nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000533567.5_1_13:45912892-45914385:-|nuORF nc|ENSG00000133112|P13693-2|TPT1 nc|ENSG00000133112|P13693-2|TPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8614501953125 3 378.862331 1133.56516 -0.12733 -4.824E-05 -2.4081 -0.00091233 -2.5354 -0.00096057 378.8616022319146 22.459 0.28703 22.482 22.294 22.581 0.022896 15 12 2 0 0 0 0.68719 1 11421 11421 2.086 0 1 600680 17245 4490 11867 12078 20416 20416 0.0037230383138648904 GVDKDYRYF 9 Unmodified _GVDKDYRYF_ 0 0 0 REV__ENSG00000153165|ENST00000409886|RGPD3 REV__ENSG00000153165|ENST00000409886|RGPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1893310546875 3 388.189101 1161.54547 -0.2326 -9.0293E-05 1.5834 0.00061464 1.3508 0.00052435 388.1897173929734 32.885 0.21455 32.726 32.596 32.81 -0.15919 17 8 3 0 0 0 0.48152 1 17146 17146 8.7454 1.4562 1 1680500 + 17246 21156 11868 12079 20417 20417 -0.028837489077204737 GVDPGLDSWF 10 Unmodified _GVDPGLDSWF_ 0 0 0 REV__nc|ENSG00000156709|O95831-5|AIFM1 REV__nc|ENSG00000156709|O95831-5|AIFM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7539672851562 2 546.753464 1091.49238 NaN NaN NaN NaN NaN NaN NaN 27.457 1 27.486 26.986 27.986 0.028664 0 0 0 0.96981 1 14269 14269 3.9444 0.3479 1 + 17247 21342 11869 12080 20418 20418 -0.04971126690384153 GVDPLQTR 8 Unmodified _GVDPLQTR_ 0 0 0 REV__nc|ENSG00000189348|A6NNH2|FAM90A27P REV__nc|ENSG00000189348|A6NNH2|FAM90A27P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 885.4763793945312 1 885.478857 884.47158 0.085156 7.5404E-05 -1.7133 -0.0015171 -1.6282 -0.0014417 885.4766460037232 104.63 0.029076 104.63 104.61 104.64 0 21 11 2 0 0 0 0.80992 1 57575 57575 0.69038 0 1 7830900 + 17248 29873 11870 12081 20419 20419 0.024723277206135208 GVDPRRWSSL 10 Unmodified _GVDPRRWSSL_ 0 0 0 REV__ENST00000471864.1_1_9:38621862-38622117:+|nuORF REV__ENST00000471864.1_1_9:38621862-38622117:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3140258789062 2 586.812179 1171.60981 0.53196 0.00031216 1.1879 0.00069706 1.7198 0.0010092 586.8138785079068 18.054 0.24742 15.433 15.314 15.562 -2.6215 40 18 3 0 0 0 0.52097 1 9550 9550 15.248 0 1 4654500 + 17249 27506 11871 12082 20420 20420 0.030864509690900377 GVDPVLLK 8 Unmodified _GVDPVLLK_ 0 0 0 ENST00000466027.1_1_13:96289346-96294343:-|nuORF;nc|ENSG00000134874|Q86YF9-3|DZIP1;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1 ENST00000466027.1_1_13:96289346-96294343:-|nuORF ENST00000466027.1_1_13:96289346-96294343:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.7644348144531 2 420.763104 839.511654 NaN NaN NaN NaN NaN NaN NaN 31.142 1 31.039 30.539 31.539 -0.10269 0 0 0 0.97444 1 16179 16179 0.79363 0 1 17250 13748 11872 12083 20421 20421 0.0854787439119491 GVDQFEEY 8 Unmodified _GVDQFEEY_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2085266113281 2 493.708722 985.402892 -0.50702 -0.00025032 3.5723 0.0017637 3.0652 0.0015133 493.71232389446476 26.846 0.5688 26.846 26.551 27.12 0 62 26 3 0 0 0 0.80044 1 13702 13702 6.3541 0.59368 1 2170300 + 17251 17184 11873 12084 20422 20422 -0.09039381369746025 GVDQLIEKF 9 Unmodified _GVDQLIEKF_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.786865234375 2 524.787307 1047.56006 0.5078 0.00026649 -0.1511 -7.9295E-05 0.3567 0.00018719 524.7871685200665 52.668 0.32776 52.668 52.508 52.836 0 49 14 5 0 0 0 0.32235 1 29125 29125 16.942 6.1184 1 52648000 17252 4095 11874 12085 20423 20423 0.038183232404207956 GVDQSRFLF 9 Unmodified _GVDQSRFLF_ 0 0 0 REV__ENSG00000182179|ENST00000333486|UBA7 REV__ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2872314453125 2 534.777274 1067.53999 0.65981 0.00035285 0.51036 0.00027293 1.1702 0.00062578 534.7771751839431 62.204 0.6107 61.717 61.345 61.956 -0.48764 77 28 5 0 0 0 0.46577 1 33733 33733 9.3474 0.75416 1 35287000 + 17253 23249 11875 12086 20424 20424 0.008925723004722386 GVDRRKLI 8 Unmodified _GVDRRKLI_ 0 0 0 REV__ENSG00000151835|ENST00000382292|SACS REV__ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.8045043945312 2 478.803626 955.592698 0.87135 0.00041721 0.22843 0.00010937 1.0998 0.00052658 478.80364678674147 32.616 0.28617 28.76 28.601 28.887 -3.8562 23 14 2 0 0 0 0.57045 1 18582 18582 28.487 0 1 9532700 + 17254 21093 11876 12087 20425 20425 0.11312575153954185 GVDSDFRAF 9 Unmodified _GVDSDFRAF_ 0 0 0 REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2374877929688 2 507.237981 1012.46141 -0.26947 -0.00013669 1.8942 0.00096081 1.6247 0.00082413 507.23882484559334 15.738 0.044072 15.738 15.716 15.76 0 12 9 2 0 0 0 0.55144 1 7599 7599 4.3292 1.44 1 376900 + 17255 24376 11877 12088 20426 20426 -0.044322800046188604 GVDSDFRAF 9 Unmodified _GVDSDFRAF_ 0 0 0 REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF REV__ENST00000469120.1_1_6:33043797-33048717:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.237981 1012.46141 -0.26947 -0.00013669 1.8942 0.00096081 1.6247 0.00082413 507.23882484559334 15.738 0.044072 15.738 15.716 15.76 0 0 0 NaN 4.3292 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 376900 + 17256 24376 11877 12088 -0.044322800046188604 GVDSVQELAPP 11 Unmodified _GVDSVQELAPP_ 0 0 0 nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1 nc|ENSG00000107263|Q13905-2|RAPGEF1 nc|ENSG00000107263|Q13905-2|RAPGEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2857666015625 2 556.285128 1110.5557 NaN NaN NaN NaN NaN NaN NaN 18.546 1 18.553 18.053 19.053 0.0060463 0 0 0 0.93969 1 9403 9403 2.7352 0.67545 1 17257 2485 11878 12089 20427 20427 0.0048481402686775255 GVDTVARDPR 10 Unmodified _GVDTVARDPR_ 0 0 0 nc|ENSG00000177427|Q96C03-3|MIEF2;ENSG00000177427|ENST00000323019|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2882690429688 2 543.288537 1084.56252 NaN NaN NaN NaN NaN NaN NaN 23.313 1 23.313 22.813 23.813 0 0 0 0 0.99248 1 11879 11879 1.4819 0 1 17258 8683 11879 12090 20428 20428 0.023621716980642304 GVDVFKIPDDS 11 Unmodified _GVDVFKIPDDS_ 0 0 0 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.8008422851562 2 596.298236 1190.58192 0.43258 0.00025795 0.93859 0.00055968 1.3712 0.00081762 596.8007927685263 61.924 0.18455 61.436 61.284 61.469 -0.48764 13 8 2 0 0 0 0.44182 1 33705 33705 19.362 7.8672 1 926410 + 17259 24462 11880 12091 20429 20429 -0.005749168016563999 GVDVSEVLF 9 Unmodified _GVDVSEVLF_ 0 0 0 ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7537841796875 2 482.752933 963.491313 0.81893 0.00039534 0.40144 0.0001938 1.2204 0.00058914 482.7530169943236 77.994 0.82653 71.818 71.428 72.255 -6.1757 121 47 4 0 0 0 0.078417 1 50848 50848 38.151 2.107 1 88020000 17260 5315 11881 12092 20430 20430 0.008106589407361753 GVDVYWSRE 9 Unmodified _GVDVYWSRE_ 0 0 0 ENSG00000111432|ENST00000229030|FZD10 ENSG00000111432|ENST00000229030|FZD10 ENSG00000111432|ENST00000229030|FZD10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2272644042969 3 370.845334 1109.51417 -0.59893 -0.00022211 1.398 0.00051844 0.79907 0.00029633 371.18037657008585 34.637 0.17658 34.637 34.518 34.695 0 14 8 2 0 0 0 0.21889 1 18242 18242 0 0 1 835830 17261 2789 11882 12093 20431 20431 -0.036203219417984656 GVEAQAWT 8 Unmodified _GVEAQAWT_ 0 0 0 REV__ENST00000525210.5_3_11:44609042-44609333:+|nuORF REV__ENST00000525210.5_3_11:44609042-44609333:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 431.2071228027344 2 431.208692 860.402832 NaN NaN NaN NaN NaN NaN NaN 77.276 1 71.1 70.6 71.6 -6.1757 0 0 0 0.97348 1 50543 50543 5.7604 0 1 + 17262 28348 11883 12094 20432 20432 -0.032953365791058786 GVEARRPRH 9 Unmodified _GVEARRPRH_ 0 0 0 ENST00000242057.8_1_7:17338625-17338889:+|nuORF ENST00000242057.8_1_7:17338625-17338889:+|nuORF ENST00000242057.8_1_7:17338625-17338889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.1047973632812 2 539.304855 1076.59516 NaN NaN NaN NaN NaN NaN NaN 15.641 1 15.647 15.147 16.147 0.0057774 0 0 0 0.85737 1 7804 7804 0.6015 0 1 17263 11107 11884 12095 20433 20433 0.0599242361161032 GVECNVLELD 10 Unmodified _GVECNVLELD_ 0 0 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF ENSG00000197763|ENST00000524230|TXNRD3 ENSG00000197763|ENST00000524230|TXNRD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7600708007812 2 545.757889 1089.50123 0.65572 0.00035786 0.18363 0.00010021 0.83934 0.00045808 545.7580287018293 73.4 0.55704 73.4 73.229 73.786 0 62 27 3 0 0 0 0.69917 1 40982 40982 2.9952 0.10602 1 3776100 17264 10000 11885 12096 20434 20434 -0.03994521116214855 GVECYPDDY 9 Unmodified _GVECYPDDY_ 0 0 0 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.6993408203125 2 530.70004 1059.38553 NaN NaN NaN NaN NaN NaN NaN 21.813 1 21.813 21.313 22.313 0 0 0 0 0.85737 1 11067 11067 0.6015 0 1 + 17265 21335 11886 12097 20435 20435 -0.14179044967067966 GVEDFRRQ 8 Unmodified _GVEDFRRQ_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2594299316406 2 503.756872 1005.49919 -0.27581 -0.00013894 4.2153 0.0021235 3.9395 0.0019845 504.26171709972664 27.618 0.17084 27.618 27.53 27.7 0 11 7 2 0 0 0 8.7369 1 14232 14232 2.3027 0.24298 1 667040 17266 1612 11887 12098 20436 20436 -0.003337690191415277 GVEDLLEV 8 Unmodified _GVEDLLEV_ 0 0 0 REV__ENST00000603907.1_1_19:35514230-35514568:+|nuORF REV__ENST00000603907.1_1_19:35514230-35514568:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.23291015625 2 437.231833 872.449113 0.27109 0.00011853 0.42542 0.00018601 0.69651 0.00030454 437.23223492670456 51.097 0.30397 51.043 50.942 51.246 -0.053871 18 14 2 0 0 0 0.80975 1 27660 27660 0.79363 0 1 1185000 + 17267 29280 11888 12099 20437 20437 0.00778683532348623 GVEEAFSLL 9 Unmodified _GVEEAFSLL_ 0 0 0 ENSG00000187682|ENST00000636362|ERAS ENSG00000187682|ENST00000636362|ERAS ENSG00000187682|ENST00000636362|ERAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7529907226562 2 482.752933 963.491313 0.90534 0.00043706 0.057288 2.7656E-05 0.96263 0.00046471 482.75288742022764 80.284 0.58517 74.108 73.806 74.391 -6.1757 106 33 4 0 0 0 0.06187 1 52533 52533 42.095 0 1 211110000 17268 9579 11889 12100 20438 20438 0.008106589407248066 GVEEEVDV 8 Unmodified _GVEEEVDV_ 0 0 0 ENST00000443739.6_1_7:143052905-143053253:-|nuORF ENST00000443739.6_1_7:143052905-143053253:-|nuORF ENST00000443739.6_1_7:143052905-143053253:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.4052124023438 1 875.399269 874.391992 0.13476 0.00011797 0.68118 0.00059631 0.81594 0.00071427 875.399696206677 97.273 0.67699 97.273 96.95 97.627 0 72 32 3 0 0 0 0.80975 1 53934 53934 0.79363 0 1 2967600 17269 13429 11890 12101 20439 20439 -0.050227837440274925 GVEELLEKSI 10 Unmodified _GVEELLEKSI_ 0 0 0 REV__ENSG00000153208|ENST00000295408|MERTK REV__ENSG00000153208|ENST00000295408|MERTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.5264282226562 3 372.876411 1115.6074 0.45378 0.0001692 0.3091 0.00011525 0.76287 0.00028446 372.87649515309215 27.161 0.15103 27.129 27.069 27.22 -0.031708 12 7 2 0 0 0 0.67033 1 14032 14032 3.3196 0 1 20981000 + 17270 21160 11891 12102 20440 20440 0.054225577207716924 GVEGGLQELF 10 Unmodified _GVEGGLQELF_ 0 0 0 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 REV__nc|ENSG00000179886|Q53EQ6-2|TIGD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.770263671875 2 524.769114 1047.52368 0.38141 0.00020015 3.4399 0.0018052 3.8214 0.0020053 524.7697769309841 65.415 0.25531 65.415 65.272 65.528 0 15 9 2 0 0 0 0.69377 1 36477 36477 3.5965 1.019 1 918620 + 17271 23124 11892 12103 20441 20441 0.0018144634370855783 GVEGIYRTKL 10 Unmodified _GVEGIYRTKL_ 0 0 0 REV__ENST00000463488.1_1_9:133569202-133574940:+|nuORF REV__ENST00000463488.1_1_9:133569202-133574940:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2210083007812 3 379.220513 1134.63971 0.076506 2.9013E-05 -0.23595 -8.9479E-05 -0.15945 -6.0466E-05 379.2205970452536 18.823 0.11643 18.829 18.767 18.883 0.0060463 8 5 2 0 0 0 0.70951 1 9574 9574 0.77653 0 1 549220 + 17272 19738 11893 12104 20442 20442 0.07777389914417654 GVELHVYSL 9 Unmodified _GVELHVYSL_ 0 0 0 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 ENSG00000203730|ENST00000367565|TEDDM1 MSMS AL20221201_MKP_PDAC_01 4 508.7763366699219 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 80.853 1 74.677 74.177 75.177 -6.1757 0 0 0 0.36554 1 53049 53049 21.747 1.293 1 17273 10221 11894 12105 20443 20443 0.02670054068948957 GVENFAFGMLI 11 Unmodified _GVENFAFGMLI_ 0 0 0 REV__ENSG00000100191|ENST00000266086|SLC5A4 REV__ENSG00000100191|ENST00000266086|SLC5A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8710327148438 3 399.870603 1196.58998 NaN NaN NaN NaN NaN NaN NaN 66.877 1 66.877 66.377 67.377 0 0 0 0 0.93933 1 37299 37299 1.2148 0.14337 1 + 17274 18023 11895 12106 20444 20444 -0.0004506108589339419 GVEPRAVVHPE 11 Unmodified _GVEPRAVVHPE_ 0 0 0 ENST00000538862.6_1_12:6960120-6960464:-|nuORF ENST00000538862.6_1_12:6960120-6960464:-|nuORF ENST00000538862.6_1_12:6960120-6960464:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2157897949219 3 397.21565 1188.62512 -0.5309 -0.00021088 0.69741 0.00027702 0.16652 6.6144E-05 397.2159844004308 17.421 0.1105 17.435 17.363 17.474 0.013865 33 29 2 0 0 0 0.74096 1 8640 8640 0.40827 0.31342 1 519380 17275 15010 11896 12107 20445 20445 0.038353177662884264 GVEQFLVLNF 10 Unmodified _GVEQFLVLNF_ 0 0 0 REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF REV__ENST00000460072.5_1_2:39984490-39995716:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.317626953125 2 583.316232 1164.61791 0.44657 0.00026049 -0.81946 -0.000478 -0.37289 -0.00021751 583.3160250383837 57.947 0.99964 51.919 51.666 52.665 -6.0275 186 55 4 0 0 0 0.60478 1 37545 37545 17.113 6.289 1 93445000 + 17276 27290 11897 12108 20446 20446 0.042185851658587126 GVEQMMCAELD 11 Unmodified _GVEQMMCAELD_ 0 0 0 REV__ENSG00000147873|ENST00000610521|IFNA5 REV__ENSG00000147873|ENST00000610521|IFNA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5020141601562 3 409.168103 1224.48248 -0.081917 -3.3518E-05 -0.39135 -0.00016013 -0.47326 -0.00019364 409.50218307202044 51.8 0.18359 51.742 51.651 51.835 -0.058918 13 8 2 0 0 0 0.74157 1 28071 28071 0.094841 0 1 1652200 + 17277 20918 11898 12109 20447 20447 -0.1207814207393767 GVEQRDSL 8 Unmodified _GVEQRDSL_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2301330566406 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 17.849 1 17.849 17.349 18.349 0 0 0 0 0.80403 1 8830 8830 23.148 2.6948 1 17278 10589 11899 12110 20448 20448 -0.009365665216591879 GVEQRDSL 8 Unmodified _GVEQRDSL_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2300109863281 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 18.028 1 18.028 17.528 18.528 0 0 0 0 0.9192 1 8933 8933 16.942 0.79319 1 17279 10589 11899 12110 20449 20449 -0.009365665216591879 GVEQRDSL 8 Unmodified _GVEQRDSL_ 0 0 0 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 ENSG00000226321|ENST00000690015|CROCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2295837402344 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 18.227 1 18.227 17.727 18.727 0 0 0 0 0.97348 1 9045 9045 5.7604 1.0044 1 17280 10589 11899 12110 20450 20450 -0.009365665216591879 GVEQRMLYPQ 10 Unmodified _GVEQRMLYPQ_ 0 0 0 REV__ENST00000252483.9_1_19:45391796-45391886:+|nuORF REV__ENST00000252483.9_1_19:45391796-45391886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5415344238281 3 407.541257 1219.60194 -0.46525 -0.00018961 0.018271 7.4462E-06 -0.44698 -0.00018216 407.5412380675003 21.143 0.27026 21.143 20.956 21.227 0 76 44 3 0 0 0 0.7191 1 10588 10588 0.77653 0 1 2071100 + 17281 24890 11900 12111 20451 20451 0.000925556573065478 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1909484863281 3 411.529129 1231.56556 -0.63334 -0.00026064 0.11587 4.7685E-05 -0.51746 -0.00021295 411.5289896376862 17.406 0.10771 17.406 17.374 17.482 0 21 15 2 0 0 0 0.70951 1 8582 8582 0.77653 0 1 386090 17282 15746 11901 12112 20452 20452 -0.04096321239421741 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.52880859375 3 411.529129 1231.56556 -0.62139 -0.00025572 0.2098 8.634E-05 -0.41159 -0.00016938 411.52907574639045 17.69 0.058044 17.69 17.666 17.724 0 11 7 2 0 0 0 0.70951 1 8745 8745 0.77653 0.36827 1 397330 17283 15746 11901 12112 20453 20453 -0.04096321239421741 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5287170410156 3 411.529129 1231.56556 -0.51577 -0.00021226 -0.14518 -5.9747E-05 -0.66096 -0.000272 411.52888520378184 20.099 0.06002 20.099 20.069 20.129 0 6 4 2 0 0 0 0.72196 1 10109 10109 0.15932 0 1 251450 17284 15746 11901 12112 20454 20454 -0.04096321239421741 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5301818847656 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 17.904 1 17.904 17.404 18.404 0 0 0 0 0.98914 1 8863 8863 0.77653 0.54069 1 17285 15746 11901 12112 20455 20455 -0.04096321239421741 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8640747070312 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 18.324 1 18.324 17.824 18.824 0 0 0 0 0.98914 1 9101 9101 0.77653 0.36827 1 17286 15746 11901 12112 20456 20456 -0.04096321239421741 GVEQRWETMP 10 Unmodified _GVEQRWETMP_ 0 0 0 ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF ENST00000594286.5_1_19:53625810-53636169:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5286865234375 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 17.288 1 17.293 16.793 17.793 0.0050564 0 0 0 0.98914 1 8714 8714 0.77653 0.14971 1 17287 15746 11901 12112 20457 20457 -0.04096321239421741 GVERAATSPAC 11 Unmodified _GVERAATSPAC_ 0 0 0 REV__ENST00000309575.4_1_3:142838724-142839039:+|nuORF REV__ENST00000309575.4_1_3:142838724-142839039:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7586059570312 2 531.255848 1060.49714 0.10546 5.6024E-05 3.2136 0.0017072 3.3191 0.0017633 531.7594306608817 19.04 0.09063 19.048 18.99 19.08 0.0078487 7 4 2 0 0 0 0.7326 1 9688 9688 1.1933 0.39971 1 979380 + 17288 25407 11902 12113 20458 20458 -0.030685658192851406 GVEREIQTC 9 Unmodified _GVEREIQTC_ 0 0 0 ENST00000355621.7_1_7:129474025-129474103:-|nuORF ENST00000355621.7_1_7:129474025-129474103:-|nuORF ENST00000355621.7_1_7:129474025-129474103:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7479858398438 2 517.750398 1033.48624 NaN NaN NaN NaN NaN NaN NaN 17.365 1 17.365 16.865 17.865 0 0 0 0 0.84737 1 8549 8549 1.8442 0.36234 1 17289 12080 11903 12114 20459 20459 -0.02915968193565277 GVERETPREGT 11 Unmodified _GVERETPREGT_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.8748168945312 3 410.873953 1229.60003 NaN NaN NaN NaN NaN NaN NaN 14.494 1 14.494 13.994 14.994 0 0 0 0 0.94184 1 6894 6894 0.40827 0.17242 1 17290 16627 11904 12115 20460 20460 -0.005587818269532363 GVERKGVL 8 Unmodified _GVERKGVL_ 0 0 0 REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.263671875 2 429.263802 856.513051 -0.5077 -0.00021794 -0.85803 -0.00036832 -1.3657 -0.00058626 429.263082600937 34.739 0.36185 34.739 34.636 34.998 0 32 18 3 0 0 0 0.57045 1 18343 18343 28.487 3.813 1 4549100 + 17291 25702 11905 12116 20461 20461 0.07905508479939272 GVERKGVL 8 Unmodified _GVERKGVL_ 0 0 0 REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2630004882812 2 429.263802 856.513051 0.96734 0.00041524 -0.13601 -5.8383E-05 0.83133 0.00035686 429.2636126066157 39.099 0.56841 34.648 34.361 34.929 -4.4509 86 35 3 0 0 0 0.48669 1 23019 23019 36.044 6.9626 1 101470000 + 17292 25702 11905 12116 20462 20462 0.07905508479939272 GVERRSRRY 9 Unmodified _GVERRSRRY_ 0 0 0 ENST00000487931.1_1_1:78444948-78478762:+|nuORF ENST00000487931.1_1_1:78444948-78478762:+|nuORF ENST00000487931.1_1_1:78444948-78478762:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5562133789062 3 393.554889 1177.64284 NaN NaN NaN NaN NaN NaN NaN 20.419 1 20.43 19.93 20.93 0.010553 0 0 0 0.85737 1 10414 10414 0.26902 0 1 17293 14213 11906 12117 20463 20463 0.06112077811803829 GVERSSATL 9 Unmodified _GVERSSATL_ 0 0 0 ENSG00000112280|ENST00000357250|COL9A1;nc|ENSG00000112280|P20849-3|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2454528808594 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 17.675 1 17.675 17.175 18.175 0 0 0 0 0.6557 1 8728 8728 10.824 0 1 17294 2876 11907 12118 20464 20464 0.014560065124328503 GVERSSATL 9 Unmodified _GVERSSATL_ 0 0 0 ENSG00000112280|ENST00000357250|COL9A1;nc|ENSG00000112280|P20849-3|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2461853027344 2 460.245806 918.47706 NaN NaN NaN NaN NaN NaN NaN 17.96 1 17.96 17.46 18.46 0 0 0 0 0.39043 1 8895 8895 20.454 2.3073 1 17295 2876 11907 12118 20465 20465 0.014560065124328503 GVESEPLF 8 Unmodified _GVESEPLF_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2179870605469 2 439.218726 876.422899 NaN NaN NaN NaN NaN NaN NaN 41.654 1 41.654 41.154 42.154 0 0 0 0 0.50394 1 22492 22492 40.449 6.2612 1 17296 2301 11908 12119 20466 20466 -0.020255856391372618 GVESMTRRI 9 Unmodified _GVESMTRRI_ 0 0 0 REV__ENSG00000117984|ENST00000236671|CTSD REV__ENSG00000117984|ENST00000236671|CTSD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7813720703125 2 524.782033 1047.54951 NaN NaN NaN NaN NaN NaN NaN 90.576 1 90.576 90.076 91.076 0 0 0 0 0.82396 1 50109 50109 4.756 0.81161 1 + 17297 19130 11909 12120 20467 20467 0.02764017314348166 GVETHAVTTI 10 Unmodified _GVETHAVTTI_ 0 0 0 REV__nc|ENSG00000105426|Q13332-4|PTPRS REV__nc|ENSG00000105426|Q13332-4|PTPRS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.791259765625 2 514.274564 1026.53457 0.68897 0.00035432 -0.40835 -0.00021 0.28062 0.00014432 514.2740993838431 69.242 0.14712 69.273 69.166 69.314 0.030914 10 6 2 0 0 0 0.23227 1 38015 38015 10.824 2.9138 1 1716500 + 17298 18424 11910 12121 20468 20468 0.022368487179846852 GVEVEWYRR 9 Unmodified _GVEVEWYRR_ 0 0 0 REV__ENSG00000103313|ENST00000219596|MEFV REV__ENSG00000103313|ENST00000219596|MEFV MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5396423339844 3 398.540245 1192.59891 NaN NaN NaN NaN NaN NaN NaN 16.234 1 16.234 15.734 16.734 0 0 0 0 0.85737 1 7896 7896 0.26902 0.033176 1 + 17299 18299 11911 12122 20469 20469 0.010310485947684356 GVEVLNTVM 9 Unmodified _GVEVLNTVM_ 0 0 0 REV__ENSG00000196090|ENST00000373187|PTPRT REV__ENSG00000196090|ENST00000373187|PTPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.5036010742188 1 961.502294 960.495018 0.88822 0.00085403 -0.65012 -0.0006251 0.2381 0.00022893 961.5013813821635 64.823 0.4178 58.647 58.45 58.868 -6.1757 38 22 2 0 0 0 0.019303 2 41948 41948;42076 64.236 5.5575 1 18298000 + 17300 23785 11912 12123 20470;20471 20470 0.013190054429401243 GVEVPAEVEAE 11 Unmodified _GVEVPAEVEAE_ 0 0 0 nc|ENSG00000262919|Q8N1B3-2|CCNQ;ENSG00000262919|ENST00000576892|CCNQ;ENST00000435741.1_1_Y:28772724-28773147:-|nuORF;ENST00000428076.1_1_13:19956755-19957193:+|nuORF nc|ENSG00000262919|Q8N1B3-2|CCNQ nc|ENSG00000262919|Q8N1B3-2|CCNQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.788818359375 2 564.774593 1127.53463 1.5706 0.00088702 1.3838 0.00078154 2.9544 0.0016686 565.2749730024202 41.887 0.60656 37.279 36.894 37.5 -4.6079 128 38 4 0 0 0 0.37677 1 25026 25026 22.736 2.3217 1 50471000 17301 10850 11913 12124 20472 20472 -0.02403196072668834 GVEWAWLDE 9 Unmodified _GVEWAWLDE_ 0 0 0 REV__ENST00000396425.7_1_22:42392631-42392787:+|nuORF REV__ENST00000396425.7_1_22:42392631-42392787:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.4166259765625 2 552.753464 1103.49238 NaN NaN NaN NaN NaN NaN NaN 18.527 1 18.533 18.033 19.033 0.0060463 0 0 0 0.85737 1 9392 9392 0.6015 0 1 + 17302 26506 11914 12125 20473 20473 -0.05523126690377467 GVEWCMPQEGC 11 Unmodified _GVEWCMPQEGC_ 0 0 0 REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.73583984375 2 619.735577 1237.4566 NaN NaN NaN NaN NaN NaN NaN 78.894 1 78.894 78.394 79.394 0 0 0 0 0.94301 1 43831 43831 0.35063 0 1 + 17303 20758 11915 12126 20474 20474 -0.15262991525537473 GVEYFNTF 8 Unmodified _GVEYFNTF_ 0 0 0 ENST00000493197.5_1_5:177638946-177656967:-|nuORF;ENSG00000175309|ENST00000308158|PHYKPL;nc|ENSG00000175309|Q8IUZ5-3|PHYKPL ENST00000493197.5_1_5:177638946-177656967:-|nuORF ENST00000493197.5_1_5:177638946-177656967:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.7228393554688 2 488.724175 975.433798 NaN NaN NaN NaN NaN NaN NaN 15.87 1 13.313 12.813 13.813 -2.557 0 0 0 0.97348 1 8179 8179 5.7604 0.52976 1 17304 8507 11916 12127 20475 20475 -0.05490183264839743 GVEYRKKMK 9 Unmodified _GVEYRKKMK_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.2171325683594 3 380.218226 1137.63285 NaN NaN NaN NaN NaN NaN NaN 38.468 1 38.181 37.681 38.681 -0.28687 0 0 0 0.86004 1 20251 20251 0.26902 0 1 + 17305 19178 11917 12128 20476 20476 0.06953753762218184 GVEYSSCDTI 10 Unmodified _GVEYSSCDTI_ 0 0 0 ENSG00000044524|ENST00000336596|EPHA3 ENSG00000044524|ENST00000336596|EPHA3 ENSG00000044524|ENST00000336596|EPHA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2279663085938 2 537.226422 1072.43829 0.51609 0.00027726 3.2148 0.0017271 3.7308 0.0020043 537.2283587294743 53.321 0.33962 53.321 53.061 53.401 0 32 14 3 0 0 0 0.69064 1 29534 29534 3.9444 0.3479 1 5179400 17306 672 11918 12129 20477 20477 -0.09503086904260272 GVEYYLCYRMS 11 Unmodified _GVEYYLCYRMS_ 0 0 0 REV__ENST00000547654.5_1_12:46312947-46313043:-|nuORF REV__ENST00000547654.5_1_12:46312947-46313043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.3070678710938 2 692.307223 1382.59989 0.30685 0.00021243 -0.45281 -0.00031348 -0.14596 -0.00010105 692.3068049846735 49.345 0.31229 49.345 49.174 49.487 0 56 14 5 0 0 0 0.65846 1 27217 27217 8.1555 2.4237 1 56295000 + 17307 28674 11919 12130 20478 20478 -0.07610241142833729 GVFAAQHI 8 Unmodified _GVFAAQHI_ 0 0 0 ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B ENSG00000184497|ENST00000375353|TMEM255B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.2063598632812 2 421.729595 841.444637 0.52563 0.00022168 -0.029089 -1.2268E-05 0.49655 0.00020941 421.7298264171692 24.119 0.17872 21.292 21.178 21.356 -2.8273 13 9 2 0 0 0 8.7369 1 13044 13044 6.3541 0.59368 1 1262600 17308 9264 11920 12131 20479 20479 0.017572639000718482 GVFAARHI 8 Unmodified _GVFAARHI_ 0 0 0 nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;nc|ENSG00000125355|Q5JRV8|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7510375976562 2 435.750862 869.487171 0.17251 7.5172E-05 1.5231 0.00066367 1.6956 0.00073884 435.75143388684285 53.285 0.32577 53.221 53.098 53.423 -0.063423 22 15 2 0 0 0 0.80624 1 28909 28909 2.8892 0 1 1140000 17309 3842 11921 12132 20480 20480 0.047206590283167316 GVFAARHI 8 Unmodified _GVFAARHI_ 0 0 0 nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;nc|ENSG00000125355|Q5JRV8|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7515563964844 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 55.663 1 55.594 55.094 56.094 -0.068737 0 0 0 0.97444 1 30255 30255 2.8892 0 1 17310 3842 11921 12132 20481 20481 0.047206590283167316 GVFADRAYYY 10 Unmodified _GVFADRAYYY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.861572265625 3 408.860984 1223.56112 -0.52259 -0.00021367 1.8441 0.00075399 1.3215 0.00054033 408.86155322428147 19.092 0.095631 19.115 19.067 19.163 0.023106 6 4 2 0 0 0 0.72196 1 9618 9618 0.15932 0 1 543320 17311 5216 11922 12133 20482 20482 -0.041714623906727866 GVFADRAYYY 10 Unmodified _GVFADRAYYY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8617858886719 3 408.860984 1223.56112 -0.3278 -0.00013402 2.1647 0.00088507 1.8369 0.00075105 409.1960506212515 20.649 0.1325 20.677 20.643 20.775 0.028357 7 5 2 0 0 0 0.72196 1 10494 10494 0.15932 0 1 357360 17312 5216 11922 12133 20483 20483 -0.041714623906727866 GVFAGRTL 8 Unmodified _GVFAGRTL_ 0 0 0 REV__nc|ENSG00000165209|Q96SI9-2|STRBP REV__nc|ENSG00000165209|Q96SI9-2|STRBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.73828125 2 410.73742 819.460287 0.7943 0.00032625 0.31973 0.00013132 1.114 0.00045757 410.73755984764136 46.022 0.32941 41.067 40.878 41.208 -4.9549 38 21 2 0 0 0 0.61462 1 28442 28442 24.674 1.5255 1 13698000 + 17313 21993 11923 12134 20484 20484 0.043335504171295725 GVFAGRTL 8 Unmodified _GVFAGRTL_ 0 0 0 REV__nc|ENSG00000165209|Q96SI9-2|STRBP REV__nc|ENSG00000165209|Q96SI9-2|STRBP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.5497741699219 2 410.73742 819.460287 0.7943 0.00032625 0.31973 0.00013132 1.114 0.00045757 410.73755984764136 46.022 0.32941 41.067 40.878 41.208 -4.9549 38 21 2 0 0 0 8.7369 1 28327 28327 24.674 7.7316 1 13698000 + 17314 21993 11923 12134 20485 20485 0.043335504171295725 GVFALALRAAP 11 Unmodified _GVFALALRAAP_ 0 0 0 ENSG00000106086|ENST00000449726|PLEKHA8 ENSG00000106086|ENST00000449726|PLEKHA8 ENSG00000106086|ENST00000449726|PLEKHA8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7366333007812 2 543.326934 1084.63931 -0.18824 -0.00010228 -4.1578 -0.002259 -4.346 -0.0023613 543.3242393609149 37.932 0.11984 37.661 37.599 37.719 -0.27133 8 5 2 0 0 0 0.29414 1 19929 19929 10.074 1.4806 1 782110 17315 2399 11924 12135 20486 20486 0.10038014985207155 GVFDFPLGDF 10 Unmodified _GVFDFPLGDF_ 0 0 0 REV__nc|ENSG00000188162|Q6ZRI0|OTOG REV__nc|ENSG00000188162|Q6ZRI0|OTOG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2626953125 2 557.266207 1112.51786 NaN NaN NaN NaN NaN NaN NaN 71.472 1 71.472 70.972 71.972 0 0 0 0 0.98914 1 39810 39810 1.8442 0 1 + 17316 23694 11925 12136 20487 20487 -0.03389652167948043 GVFEYFTNI 9 Unmodified _GVFEYFTNI_ 0 0 0 nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC nc|ENSG00000054983|P54803-5|GALC nc|ENSG00000054983|P54803-5|GALC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.788818359375 2 545.266207 1088.51786 0.6081 0.00033158 0.42456 0.0002315 1.0327 0.00056307 545.2666969757711 42.966 0.21825 42.951 42.802 43.02 -0.015671 13 9 2 0 0 0 0.19298 1 22962 22962 8.5933 0 1 2654200 17317 769 11926 12137 20488 20488 -0.02285652167961416 GVFEYFTNI 9 Unmodified _GVFEYFTNI_ 0 0 0 nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC nc|ENSG00000054983|P54803-5|GALC nc|ENSG00000054983|P54803-5|GALC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7744140625 2 545.266207 1088.51786 0.5253 0.00028643 0.36856 0.00020096 0.89386 0.00048739 545.2662206880321 48.083 0.31234 42.849 42.675 42.988 -5.2339 44 18 3 0 0 0 0.097209 1 29827 29827 30.225 0 1 33489000 17318 769 11926 12137 20489 20489 -0.02285652167961416 GVFFFFFFF 9 Unmodified _GVFFFFFFF_ 0 0 0 REV__ENST00000323460.9_1_3:196659561-196659759:+|nuORF REV__ENST00000323460.9_1_3:196659561-196659759:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.796875 2 602.796946 1203.57934 NaN NaN NaN NaN NaN NaN NaN 68.985 1 68.985 68.485 69.485 0 0 0 0 0.84369 1 38442 38442 2.3027 0.4585 1 + 17319 25290 11927 12138 20490 20490 -0.014306756780115393 GVFFGLVF 8 Unmodified _GVFFGLVF_ 0 0 0 nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2 nc|ENSG00000138760|Q14108-2|SCARB2 nc|ENSG00000138760|Q14108-2|SCARB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.25048828125 2 443.247089 884.479626 NaN NaN NaN NaN NaN NaN NaN 54.58 1 54.58 54.08 55.08 0 0 0 0 0.97444 1 30304 30304 2.8892 0 1 17320 5101 11928 12139 20491 20491 0.03276506708039051 GVFFLKFPSD 10 Unmodified _GVFFLKFPSD_ 0 0 0 nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5419921875 3 386.206092 1155.59645 1.2742 0.00049212 0.33941 0.00013108 1.6137 0.00062321 386.20570500032784 84.066 0.68291 77.89 77.472 78.155 -6.1757 55 36 2 0 0 0 0.68719 1 55165 55165 2.086 0 1 10960000 17321 16652 11929 12140 20492 20492 0.02487200137147738 GVFGGALT 8 Unmodified _GVFGGALT_ 0 0 0 ENST00000542061.2_2_12:133087598-133088183:+|nuORF ENST00000542061.2_2_12:133087598-133088183:+|nuORF ENST00000542061.2_2_12:133087598-133088183:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1962280273438 2 361.197596 720.38064 NaN NaN NaN NaN NaN NaN NaN 80.744 1 80.251 79.751 80.751 -0.49247 0 0 0 0.97444 1 44215 44215 2.5775 1.7838 1 17322 15054 11930 12141 20493 20493 0.009264837431146589 GVFGMLGEIL 10 Unmodified _GVFGMLGEIL_ 0 0 0 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 ENSG00000166398|ENST00000299505|GARRE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2827758789062 2 518.280803 1034.54705 NaN NaN NaN NaN NaN NaN NaN 57.396 1 57.396 56.896 57.896 0 0 0 0 0.81521 1 31939 31939 11.64 2.2929 1 17323 7481 11931 12142 20494 20494 0.03116168856695367 GVFHCVNQWV 10 Unmodified _GVFHCVNQWV_ 0 0 0 REV__ENST00000492586.1_1_3:168833527-168838929:-|nuORF REV__ENST00000492586.1_1_3:168833527-168838929:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.20458984375 3 396.858809 1187.5546 -0.53146 -0.00021091 -0.022405 -8.8916E-06 -0.55386 -0.00021981 396.8588679451 17.942 0.14357 17.956 17.873 18.016 0.013865 47 14 4 0 0 0 0.70951 1 8931 8931 0.77653 0 1 13984000 + 17324 27905 11932 12143 20495 20495 -0.031676788230470265 GVFKLYGDNHF 11 Unmodified _GVFKLYGDNHF_ 0 0 0 ENSG00000204764|ENST00000523189|RANBP17;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF ENSG00000204764|ENST00000523189|RANBP17;ENST00000519256.5_1_5:170585477-170669877:+|nuORF ENSG00000204764|ENST00000523189|RANBP17 MSMS AL20221201_MKP_PDAC_01 4 432.8847961425781 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 17.531 1 14.944 14.444 15.444 -2.5866 0 0 0 0.94165 1 9175 9175 1.3296 0.25818 1 17325 10325;14701 11933 12144 20496 20496 -0.006117980909721155 GVFKLYGDNHF 11 Unmodified _GVFKLYGDNHF_ 0 0 0 ENSG00000204764|ENST00000523189|RANBP17;ENST00000389118.8_1_5:170395310-170711609:+|nuORF;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF ENSG00000204764|ENST00000523189|RANBP17;ENST00000519256.5_1_5:170585477-170669877:+|nuORF ENSG00000204764|ENST00000523189|RANBP17 MSMS AL20221201_MKP_PDAC_01 4 432.8858337402344 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 18.581 1 15.959 15.459 16.459 -2.6215 0 0 0 0.94148 1 9797 9797 1.4551 0.67859 1 17326 10325;14701 11933 12144 20497 20497 -0.006117980909721155 GVFKPHFV 8 Unmodified _GVFKPHFV_ 0 0 0 REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.762451171875 2 465.763438 929.512323 NaN NaN NaN NaN NaN NaN NaN 73.786 1 73.83 73.33 74.33 0.043983 0 0 0 0.97444 1 40665 40665 2.8892 0.31174 1 + 17327 24551 11934 12145 20498 20498 0.044747138308935064 GVFLFYFY 8 Unmodified _GVFLFYFY_ 0 0 0 REV__ENST00000438423.6_1_15:57578992-57579037:+|nuORF REV__ENST00000438423.6_1_15:57578992-57579037:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5133666992188 3 352.512745 1054.51641 NaN NaN NaN NaN NaN NaN NaN 21.358 1 21.358 20.858 21.858 0 0 0 0 0.97444 1 10801 10801 0.45834 0.18932 1 + 17328 27053 11935 12146 20499 20499 -0.008672414660622962 GVFLNQVMLQ 10 Unmodified _GVFLNQVMLQ_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A;ENST00000471947.1_1_2:55633152-55646215:-|nuORF nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.2115478515625 3 383.542598 1147.60597 -0.75626 -0.00029006 -0.13192 -5.0598E-05 -0.88818 -0.00034066 383.542543843764 28.396 0.43061 28.396 28.169 28.6 0 78 23 4 0 0 0 0.66569 1 14599 14599 3.5871 0.5148 1 43469000 17329 3114 11936 12147 20500 20500 0.03806645151030352 GVFLPAGI 8 Unmodified _GVFLPAGI_ 0 0 0 ENST00000555241.5_2_14:64663518-64663803:+|nuORF ENST00000555241.5_2_14:64663518-64663803:+|nuORF ENST00000555241.5_2_14:64663518-64663803:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2319641113281 2 387.231439 772.448326 0.85394 0.00033067 0.031813 1.2319E-05 0.88576 0.00034299 387.23140223667014 66.632 0.3981 60.456 60.23 60.628 -6.1757 38 22 2 0 0 0 0.70131 1 43391 43391 17.087 5.9721 1 22602000 17330 15224 11937 12148 20501 20501 0.052999336739389946 GVFMLIFSL 9 Unmodified _GVFMLIFSL_ 0 0 0 REV__ENSG00000253598|ENST00000518568|SLC10A5 REV__ENSG00000253598|ENST00000518568|SLC10A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7880859375 2 513.788264 1025.56198 -0.44813 -0.00023025 -0.11259 -5.7848E-05 -0.56072 -0.00028809 513.7881807422857 15.743 0.13684 15.743 15.689 15.826 0 73 31 3 0 0 0 0.55144 1 7593 7593 4.3292 0.73274 1 2029100 + 17331 24513 11938 12149 20502 20502 0.050216607246966305 GVFMLIFSL 9 Unmodified _GVFMLIFSL_ 0 0 0 REV__ENSG00000253598|ENST00000518568|SLC10A5 REV__ENSG00000253598|ENST00000518568|SLC10A5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.788264 1025.56198 -0.44813 -0.00023025 -0.11259 -5.7848E-05 -0.56072 -0.00028809 513.7881807422857 15.743 0.13684 15.743 15.689 15.826 0 0 0 NaN 4.3292 73 31 3 NaN NaN NaN NaN 0 NaN NaN 0 2029100 + 17332 24513 11938 12149 0.050216607246966305 GVFPASPLSWL 11 Unmodified _GVFPASPLSWL_ 0 0 0 ENST00000600944.5_1_19:50195509-50200723:+|nuORF;ENST00000295404.9_1_19:50194996-50204826:+|nuORF;ENST00000599023.5_1_19:50195509-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C ENST00000600944.5_1_19:50195509-50200723:+|nuORF ENST00000600944.5_1_19:50195509-50200723:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8816223144531 3 391.881608 1172.623 -0.59791 -0.00023431 -0.17163 -6.726E-05 -0.76954 -0.00030157 391.8815679418383 17.563 0.21925 17.563 17.436 17.655 0 86 35 3 0 0 0 0.70701 1 8619 8619 1.4551 0.67859 1 1840500 17333 7842 11939 12150 20503 20503 0.04358889028480917 GVFPFISGFAF 11 Unmodified _GVFPFISGFAF_ 0 0 0 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7825927734375 2 594.808042 1187.60153 0.59512 0.00035399 0.4285 0.00025487 1.0236 0.00060886 594.8082438979382 83.755 0.19238 83.255 83.172 83.365 -0.49961 10 7 2 0 0 0 0.29245 1 45882 45882 10.824 1.4408 1 330020 17334 6033 11940 12151 20504 20504 0.015235039997605782 GVFPHTPA 8 Unmodified _GVFPHTPA_ 0 0 0 ENST00000263377.6_1_19:15348671-15349019:-|nuORF ENST00000263377.6_1_19:15348671-15349019:-|nuORF ENST00000263377.6_1_19:15348671-15349019:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2154541015625 2 413.216321 824.418088 NaN NaN NaN NaN NaN NaN NaN 17.107 1 17.107 16.607 17.607 0 0 0 0 0.97444 1 8402 8402 0.79363 0 1 17335 11288 11941 12152 20505 20505 -0.0011442499124996175 GVFPLTPA 8 Unmodified _GVFPLTPA_ 0 0 0 ENSG00000166573|ENST00000299727|GALR1 ENSG00000166573|ENST00000299727|GALR1 ENSG00000166573|ENST00000299727|GALR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2278137207031 2 401.228897 800.44324 NaN NaN NaN NaN NaN NaN NaN 15.393 1 15.379 14.879 15.879 -0.014067 0 0 0 0.97444 1 7551 7551 0.79363 0 1 17336 7510 11942 12153 20506 20506 0.03503629811302744 GVFPLTPA 8 Unmodified _GVFPLTPA_ 0 0 0 ENSG00000166573|ENST00000299727|GALR1 ENSG00000166573|ENST00000299727|GALR1 ENSG00000166573|ENST00000299727|GALR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2283020019531 2 401.228897 800.44324 NaN NaN NaN NaN NaN NaN NaN 17.365 1 17.379 16.879 17.879 0.013865 0 0 0 0.97444 1 8629 8629 0.79363 0 1 17337 7510 11942 12153 20507 20507 0.03503629811302744 GVFPWIMLY 9 Unmodified _GVFPWIMLY_ 0 0 0 ENST00000279068.10_1_20:60709570-60709771:+|nuORF ENST00000279068.10_1_20:60709570-60709771:+|nuORF ENST00000279068.10_1_20:60709570-60709771:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5333557128906 3 375.864901 1124.57287 -0.50302 -0.00018907 0.25233 9.4841E-05 -0.25069 -9.4225E-05 375.86512406012145 26.004 0.28552 26.004 25.84 26.125 0 30 13 3 0 0 0 0.21798 1 13300 13300 1.1933 0.12188 1 3953300 17338 11402 11943 12154 20508 20508 0.015570630989486745 GVFQDRTLHV 10 Unmodified _GVFQDRTLHV_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MSMS AL20221201_MKP_PDAC_01 4 391.2115783691406 3 391.212128 1170.61456 NaN NaN NaN NaN NaN NaN NaN 82.955 1 76.78 76.28 77.28 -6.1757 0 0 0 0.91523 1 54519 54519 3.8763 0.80407 1 17339 5488 11944 12155 20509 20509 0.036073351118375285 GVFRINVEFV 10 Unmodified _GVFRINVEFV_ 0 0 0 REV__nc|ENSG00000111885|P33908-2|MAN1A1 REV__nc|ENSG00000111885|P33908-2|MAN1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8898010253906 3 393.888874 1178.64479 NaN NaN NaN NaN NaN NaN NaN 20.397 1 20.425 19.925 20.925 0.028357 0 0 0 0.9997 1 10322 10322 0.69767 0.46182 1 + 17340 18776 11945 12156 20510 20510 0.0626169377703718 GVFRVYPRPRG 11 Unmodified _GVFRVYPRPRG_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7806091308594 3 435.250918 1302.73092 1.1089 0.00048263 -0.52272 -0.00022752 0.58613 0.00025511 435.2507102128178 34.968 0.2919 30.873 30.7 30.991 -4.0951 27 16 2 0 0 0 0.306 1 20171 20171 0.45452 0.046251 1 5191500 17341 2358 11946 12157 20511 20511 0.09166698402373186 GVFSLASWKI 10 Unmodified _GVFSLASWKI_ 0 0 0 ENST00000468234.1_1_20:43148040-43150592:-|nuORF ENST00000468234.1_1_20:43148040-43150592:-|nuORF ENST00000468234.1_1_20:43148040-43150592:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8785095214844 3 369.878087 1106.61243 -0.089212 -3.2997E-05 0.38891 0.00014385 0.2997 0.00011085 369.8782915969706 40.227 0.18262 40.227 40.131 40.314 0 20 8 3 0 0 0 0.70895 1 21627 21627 1.9064 0.1641 1 1748600 17342 13801 11947 12158 20512 20512 0.0633890637402601 GVFVNEKE 8 Unmodified _GVFVNEKE_ 0 0 0 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 REV__nc|ENSG00000108021|Q5VWN6-2|TASOR2 MSMS AL20221201_MKP_PDAC_01 4 461.2390747070312 2 461.23745 920.460347 NaN NaN NaN NaN NaN NaN NaN 95.967 1 89.791 89.291 90.291 -6.1757 0 0 0 0.95973 1 63575 63575 8.5933 0 1 + 17343 18591 11948 12159 20513 20513 -0.003064943735239467 GVFWFSLLL 9 Unmodified _GVFWFSLLL_ 0 0 0 nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24;ENST00000529765.5_1_11:125442423-125447639:+|nuORF nc|ENSG00000149547|O14681-3|EI24 nc|ENSG00000149547|O14681-3|EI24 MSMS AL20221201_MKP_PDAC_01 4 541.3065185546875 2 541.307678 1080.6008 NaN NaN NaN NaN NaN NaN NaN 93.114 1 86.938 86.438 87.438 -6.1757 0 0 0 0.43483 1 61613 61613 19.439 4.8573 1 17344 6018 11949 12160 20514 20514 0.06372709350716832 GVGAAVID 8 Unmodified _GVGAAVID_ 0 0 0 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1956787109375 2 351.195054 700.375555 -0.76992 -0.00027039 4.1162 0.0014456 3.3463 0.0011752 351.1962546688088 32.978 0.21754 32.978 32.87 33.088 0 13 10 2 0 0 0 0.80722 1 17279 17279 2.3027 0 1 1452300 17345 8836 11950 12161 20515 20515 0.013381798805198741 GVGAAVID 8 Unmodified _GVGAAVID_ 0 0 0 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 351.195054 700.375555 -0.13197 -4.6347E-05 5.1743 0.0018172 5.0423 0.0017708 351.1967673724398 33.077 0.41028 33.107 32.864 33.274 0.029743 0.064637 8.8845E-05 NaN 2.3027 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8213900 17346 8836 11950 12161 0.013381798805198741 GVGAMSYF 8 Unmodified _GVGAMSYF_ 0 0 0 REV__nc|ENSG00000184716|A6NH21|SERINC4 REV__nc|ENSG00000184716|A6NH21|SERINC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1895141601562 2 416.188914 830.363275 NaN NaN NaN NaN NaN NaN NaN 15.864 1 15.864 15.364 16.364 0 0 0 0 0.97444 1 7682 7682 2.8892 2.0956 1 + 17347 29847 11951 12162 20516 20516 -0.05869179854164486 GVGANSKI 8 Unmodified _GVGANSKI_ 0 0 0 nc|ENSG00000105793|A4D1E9-3|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2129821777344 2 373.213778 744.413003 1.4565 0.00054357 -2.4649 -0.00091994 -1.0084 -0.00037636 373.21254327744776 81.09 0.3523 74.914 74.66 75.013 -6.1757 22 19 2 0 0 0 0.80143 1 53234 53234 5.7604 0.52976 1 12675000 17348 2365 11952 12163 20517 20517 0.03057271146144558 GVGAPSELYL 10 Unmodified _GVGAPSELYL_ 0 0 0 REV__ENSG00000064601|ENST00000646241|CTSA REV__ENSG00000064601|ENST00000646241|CTSA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2671508789062 2 503.266207 1004.51786 NaN NaN NaN NaN NaN NaN NaN 41.031 1 41.031 40.531 41.531 0 0 0 0 0.38297 1 22096 22096 32.305 3.2239 1 + 17349 17357 11953 12164 20518 20518 0.015783478320258837 GVGCHHLQHVH 11 Unmodified _GVGCHHLQHVH_ 0 0 0 nc|ENSG00000111305|Q2KHT4-8|GSG1;nc|ENSG00000111305|Q2KHT4-4|GSG1;nc|ENSG00000111305|Q2KHT4-7|GSG1 nc|ENSG00000111305|Q2KHT4-8|GSG1 nc|ENSG00000111305|Q2KHT4-8|GSG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.533203125 3 408.533208 1222.57779 NaN NaN NaN NaN NaN NaN NaN 16.852 1 16.857 16.357 17.357 0.0050564 0 0 0 0.94144 1 8469 8469 0.50596 0 1 17350 16117 11954 12165 20519 20519 -0.02459239985705608 GVGCLSIK 8 Unmodified _GVGCLSIK_ 0 0 0 ENST00000441493.6_1_22:18271763-18271865:-|nuORF ENST00000441493.6_1_22:18271763-18271865:-|nuORF ENST00000441493.6_1_22:18271763-18271865:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.7192077636719 2 388.720381 775.42621 NaN NaN NaN NaN NaN NaN NaN 30.135 1 30.165 29.665 30.665 0.030106 0 0 0 0.95607 1 15750 15750 9.3474 0.75416 1 17351 13398 11955 12166 20520 20520 0.029513859338635484 GVGCVCCL 8 Unmodified _GVGCVCCL_ 0 0 0 nc|ENSG00000124564|O00476|SLC17A3;ENSG00000124564|ENST00000397060|SLC17A3 nc|ENSG00000124564|O00476|SLC17A3 nc|ENSG00000124564|O00476|SLC17A3 MSMS AL20221201_MKP_PDAC_01 4 377.1600036621094 2 377.158245 752.301937 NaN NaN NaN NaN NaN NaN NaN 45.773 1 40.819 40.319 41.319 -4.9549 0 0 0 0.97444 1 28164 28164 2.8892 0 1 17352 3798 11956 12167 20521 20521 -0.08412151149479996 GVGDDLYSYGF 11 Unmodified _GVGDDLYSYGF_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7600708007812 2 596.761486 1191.50842 NaN NaN NaN NaN NaN NaN NaN 74.448 1 74.448 73.948 74.948 0 0 0 0 0.9385 1 41426 41426 3.5965 0.60125 1 17353 9779;10169 11957 12168 20522 20522 -0.07967465244178129 GVGDTLDL 8 Unmodified _GVGDTLDL_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2026672363281 2 395.203076 788.391599 NaN NaN NaN NaN NaN NaN NaN 24.946 1 24.946 24.446 25.446 0 0 0 0 0.97348 1 12767 12767 5.7604 2.8712 1 17354 2329 11958 12169 20523 20523 -0.011061586732466822 GVGFAHSP 8 Unmodified _GVGFAHSP_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72957966-72959197:-|nuORF nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS AL20221201_MKP_PDAC_01 4 386.1920776367188 2 386.192845 770.371138 NaN NaN NaN NaN NaN NaN NaN 16.009 1 13.452 12.952 13.952 -2.557 0 0 0 0.9706 1 8262 8262 6.3541 2.4097 1 17355 7676 11959 12170 20524 20524 -0.023232845423876824 GVGFGPDH 8 Unmodified _GVGFGPDH_ 0 0 0 REV__ENST00000265087.8_1_5:172755137-172755446:-|nuORF REV__ENST00000265087.8_1_5:172755137-172755446:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2244262695312 2 393.182478 784.350402 NaN NaN NaN NaN NaN NaN NaN 24.432 1 24.432 23.932 24.932 0 0 0 0 0.97444 1 12487 12487 0.79363 0 1 + 17356 25087 11960 12171 20525 20525 -0.05039874922056242 GVGFVKIH 8 Unmodified _GVGFVKIH_ 0 0 0 nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1 nc|ENSG00000131620|Q5XXA6-2|ANO1 nc|ENSG00000131620|Q5XXA6-2|ANO1 MSMS AL20221201_MKP_PDAC_01 4 428.7568054199219 2 428.755613 855.496673 NaN NaN NaN NaN NaN NaN NaN 21.33 1 18.595 18.095 19.095 -2.7348 0 0 0 0.9706 1 11412 11412 6.3541 0.59368 1 17357 4337 11961 12172 20526 20526 0.0631442731386187 GVGFWFNFF 9 Unmodified _GVGFWFNFF_ 0 0 0 ENST00000358127.8_1_9:36833483-36833678:-|nuORF ENST00000358127.8_1_9:36833483-36833678:-|nuORF ENST00000358127.8_1_9:36833483-36833678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1809692382812 3 374.179877 1119.5178 NaN NaN NaN NaN NaN NaN NaN 28.084 1 28.114 27.614 28.614 0.029564 0 0 0 0.84369 1 14612 14612 1.1933 0.41681 1 17358 12122 11962 12173 20527 20527 -0.03717607377279819 GVGGAVWR 8 Unmodified _GVGGAVWR_ 0 0 0 ENST00000298564.14_1_5:176084095-176084419:+|nuORF ENST00000298564.14_1_5:176084095-176084419:+|nuORF ENST00000298564.14_1_5:176084095-176084419:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2227172851562 2 401.221937 800.429321 0.19688 7.8994E-05 0.96294 0.00038635 1.1598 0.00046535 401.22220202165755 50.945 0.51869 50.891 50.608 51.127 -0.053871 45 25 2 0 0 0 0.80676 1 27600 27600 2.5775 0 1 6116800 17359 11535 11963 12174 20528 20528 0.021123971028941924 GVGGKGSL 8 Unmodified _GVGGKGSL_ 0 0 0 REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF REV__ENST00000568706.1_1_16:1834024-1837680:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 674.3097534179688 1 674.383165 673.375889 0.50635 0.00034147 0.38811 0.00026174 0.89446 0.00060321 674.3835673183725 46.038 0.31805 41.083 40.908 41.226 -4.9549 30 20 2 0 0 0 8.7369 1 28308 28308 14.582 5.2343 1 9198200 + 17360 17951 11964 12175 20529 20529 0.026135996003745277 GVGGRTAFGGG 11 Unmodified _GVGGRTAFGGG_ 0 0 0 nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1 nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1 nc|ENSG00000277215|Q8N9U9|SPANXA2-OT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2379150390625 2 468.238316 934.462078 NaN NaN NaN NaN NaN NaN NaN 24.682 1 24.682 24.182 25.182 0 0 0 0 0.88164 1 12623 12623 8.1555 0 1 17361 16609 11965 12176 20530 20530 -0.007774405649115579 GVGHVARGA 9 Unmodified _GVGHVARGA_ 0 0 0 ENSG00000140807|ENST00000268459|NKD1 ENSG00000140807|ENST00000268459|NKD1 ENSG00000140807|ENST00000268459|NKD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.8607482910156 2 412.230294 822.446034 0.018401 7.5855E-06 -0.0059823 -2.4661E-06 0.012419 5.1194E-06 412.23070170396784 25.609 0.29033 22.726 22.549 22.84 -2.8831 26 15 3 0 0 0 0.20727 1 14037 14037 7.9102 2.6795 1 4684400 17362 5270 11966 12177 20531 20531 0.02770897988852994 GVGKDKDSSEV 11 Unmodified _GVGKDKDSSEV_ 0 0 0 REV__ENSG00000159961|ENST00000641141|OR3A3 REV__ENSG00000159961|ENST00000641141|OR3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1869506835938 3 374.187537 1119.54078 -0.55017 -0.00020587 -1.671 -0.00062525 -2.2211 -0.00083111 374.1868546784102 18.022 0.11773 18.022 17.959 18.077 0 32 17 2 0 0 0 0.73115 1 8960 8960 0.45452 0 1 1164600 + 17363 21508 11967 12178 20532 20532 -0.014206778411562482 GVGKGCGR 8 Unmodified _GVGKGCGR_ 0 0 0 L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 733.380126953125 1 733.377368 732.370092 0.7157 0.00052488 -0.19451 -0.00014265 0.52118 0.00038222 733.376952606961 91.104 0.72572 84.929 84.625 85.351 -6.1757 74 41 2 0 0 0 0.80975 1 60037 60037 0.79363 0.10326 1 36029000 17364 15957 11968 12179 20533 20533 -0.006798221829285467 GVGKGCGR 8 Unmodified _GVGKGCGR_ 0 0 0 L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1925048828125 2 367.192322 732.370092 1.4597 0.00053599 -1.3189 -0.0004843 0.14078 5.1693E-05 367.19172808175955 91.181 0.68675 85.006 84.625 85.312 -6.1757 56 39 2 0 0 0 0.80975 1 60261 60261 0.79363 0.79363 1 7872800 17365 15957 11968 12179 20534 20534 -0.006798221829285467 GVGLKGEF 8 Unmodified _GVGLKGEF_ 0 0 0 REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.7244873046875 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 4.698 1 2.216 1.716 2.716 -2.482 0 0 0 0.95973 1 2385 2385 8.5933 1.304 1 + 17366 29111 11969 12180 20535 20535 0.022904418059511045 GVGLLDHMVSI 11 Unmodified _GVGLLDHMVSI_ 0 0 0 nc|ENSG00000164197|Q86T96-2|RNF180;nc|ENSG00000164197|Q86T96-3|RNF180 nc|ENSG00000164197|Q86T96-2|RNF180 nc|ENSG00000164197|Q86T96-2|RNF180 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.310546875 2 570.807716 1139.60088 0.65284 0.00037265 0.90147 0.00051457 1.5543 0.00088721 571.3094507831615 68.397 0.37037 67.917 67.66 68.031 -0.48071 45 16 4 0 0 0 0.30985 1 37406 37406 26.268 10.421 1 5957400 17367 16334 11970 12181 20536 20536 0.03666341288408148 GVGLTRRA 8 Unmodified _GVGLTRRA_ 0 0 0 ENST00000376062.6_1_20:30252428-30253052:-|nuORF ENST00000376062.6_1_20:30252428-30253052:-|nuORF ENST00000376062.6_1_20:30252428-30253052:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.1961669921875 2 415.253769 828.492984 NaN NaN NaN NaN NaN NaN NaN 56.187 1 50.21 49.71 50.71 -5.9769 0 0 0 0.97444 1 35834 35834 2.8892 0.31174 1 17368 12487 11971 12182 20537 20537 0.07187757539986706 GVGNEDEEDGD 11 Unmodified _GVGNEDEEDGD_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2060546875 2 568.204729 1134.39491 -0.19983 -0.00011355 2.2186 0.0012606 2.0188 0.0011471 568.2061655633697 19.973 0.16877 19.973 19.888 20.057 0 28 24 2 0 0 0 0.74429 1 10007 10007 0.35063 0.35063 1 826130 + 17369 17151 11972 12183 20538 20538 -0.16691605147843802 GVGNKAFR 8 Unmodified _GVGNKAFR_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000562289.1_1_16:67321760-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7410888671875 2 424.740494 847.466435 1.3157 0.00055884 -0.24429 -0.00010376 1.0714 0.00045508 424.74036466890357 36.96 0.55027 32.676 32.405 32.955 -4.2835 78 33 3 0 0 0 0.6895 1 21722 21722 18.135 1.1927 1 80485000 17370 9771 11973 12184 20539 20539 0.03660068648662218 GVGPAGLLL 9 Unmodified _GVGPAGLLL_ 0 0 0 REV__ENSG00000166592|ENST00000299759|RRAD REV__ENSG00000166592|ENST00000299759|RRAD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.7507629394531 2 398.749996 795.485439 NaN NaN NaN NaN NaN NaN NaN 32.55 1 32.55 32.05 33.05 0 0 0 0 0.84369 1 17015 17015 2.3027 1.5091 1 + 17371 22135 11974 12185 20540 20540 0.07951605219716384 GVGPCRAA 8 Unmodified _GVGPCRAA_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2034301757812 2 365.686873 729.359193 1.3592 0.00049703 -0.89392 -0.00032689 0.46524 0.00017013 365.6851589876523 18.423 0.43126 15.801 15.54 15.971 -2.6215 60 40 2 0 0 0 0.80676 1 9646 9646 2.5775 0.27475 1 1075200 17372 11266 11975 12186 20541 20541 -0.01631224557229416 GVGQGQSQEPS 11 Unmodified _GVGQGQSQEPS_ 0 0 0 nc|ENSG00000095370|Q8N5H7-4|SH2D3C nc|ENSG00000095370|Q8N5H7-4|SH2D3C nc|ENSG00000095370|Q8N5H7-4|SH2D3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.248046875 2 537.246535 1072.47852 NaN NaN NaN NaN NaN NaN NaN 27.994 1 28.024 27.524 28.524 0.029564 0 0 0 0.93933 1 14563 14563 2.9952 0.93549 1 17373 16075 11976 12187 20542 20542 -0.05482404189478984 GVGRKMSA 8 Unmodified _GVGRKMSA_ 0 0 0 ENST00000453671.5_1_3:194304740-194304791:+|nuORF ENST00000453671.5_1_3:194304740-194304791:+|nuORF ENST00000453671.5_1_3:194304740-194304791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.22021484375 2 403.22108 804.427607 -0.25763 -0.00010388 -0.63136 -0.00025458 -0.88899 -0.00035846 403.2203133135677 30.187 0.61658 30.217 29.84 30.456 0.030106 71 25 4 0 0 0 0.80676 1 15859 15859 2.5775 1.7838 1 5619000 17374 13559 11977 12188 20543 20543 0.017570200226373345 GVGRMVREWT 10 Unmodified _GVGRMVREWT_ 0 0 0 ENST00000393946.6_1_11:66774383-66774566:+|nuORF ENST00000393946.6_1_11:66774383-66774566:+|nuORF ENST00000393946.6_1_11:66774383-66774566:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5432434082031 3 397.54148 1189.60261 NaN NaN NaN NaN NaN NaN NaN 19.758 1 19.758 19.258 20.258 0 0 0 0 1.0019 1 9905 9905 0.15932 0.064481 1 17375 12722 11978 12189 20544 20544 0.015393950970064907 GVGRYLHA 8 Unmodified _GVGRYLHA_ 0 0 0 REV__ENSG00000178605|ENST00000326153|GTPBP6 REV__ENSG00000178605|ENST00000326153|GTPBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7414245605469 2 436.740494 871.466435 0.83078 0.00036283 1.4234 0.00062165 2.2542 0.00098448 436.74123746107784 68.824 0.58801 68.849 68.479 69.067 0.025146 55 27 4 0 0 0 0.80232 1 37752 37752 5.2307 2.3415 1 19595000 + 17376 23053 11979 12190 20545 20545 0.025560686486414852 GVGTDISKSMF 11 Unmodified _GVGTDISKSMF_ 0 0 0 nc|ENSG00000177103|Q8TD84-2|DSCAML1;ENSG00000177103|ENST00000651296|DSCAML1 nc|ENSG00000177103|Q8TD84-2|DSCAML1 nc|ENSG00000177103|Q8TD84-2|DSCAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8607482910156 3 381.190113 1140.54851 -0.55177 -0.00021033 3.3627 0.0012818 2.811 0.0010715 381.1912374586617 17.852 0.068298 17.866 17.844 17.913 0.013866 9 5 2 0 0 0 0.73115 1 8929 8929 0.45452 0.053801 1 432490 17377 8656 11980 12191 20546 20546 -0.01614241845209108 GVGVEARG 8 Unmodified _GVGVEARG_ 0 0 0 ENST00000568223.6_1_16:767979-768486:+|nuORF ENST00000568223.6_1_16:767979-768486:+|nuORF ENST00000568223.6_1_16:767979-768486:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.2017517089844 2 372.703577 743.392602 1.5003 0.00055918 0.058193 2.1689E-05 1.5585 0.00058087 372.70332295345196 41.533 0.38433 36.925 36.801 37.186 -4.6079 31 25 2 0 0 0 8.7369 1 24987 24987 0 0 1 12832000 17378 15449 11981 12192 20547 20547 0.010641004863373382 GVGVRGWG 8 Unmodified _GVGVRGWG_ 0 0 0 ENST00000374861.7_3_9:104161204-104161267:+|nuORF ENST00000374861.7_3_9:104161204-104161267:+|nuORF ENST00000374861.7_3_9:104161204-104161267:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2147827148438 2 394.214112 786.413671 0.39369 0.0001552 1.6636 0.00065582 2.0573 0.00081102 394.21475977861667 42.663 0.46909 42.654 42.516 42.985 -0.0088196 25 21 2 0 0 0 0.80624 1 22988 22988 2.8892 0 1 7998900 17379 12459 11982 12193 20548 20548 0.01192110585861883 GVGWEEGAEE 10 Unmodified _GVGWEEGAEE_ 0 0 0 ENST00000300811.7_1_19:44111638-44111779:-|nuORF ENST00000300811.7_1_19:44111638-44111779:-|nuORF ENST00000300811.7_1_19:44111638-44111779:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7218017578125 2 531.722361 1061.43017 NaN NaN NaN NaN NaN NaN NaN 14.479 1 14.479 13.979 14.979 0 0 0 0 0.99091 1 6885 6885 1.6526 0.85899 1 17380 11555 11983 12194 20549 20549 -0.0980889782936174 GVGYGADRRRG 11 Unmodified _GVGYGADRRRG_ 0 0 0 nc|ENSG00000197757|P09630-2|HOXC6;ENSG00000197757|ENST00000243108|HOXC6 nc|ENSG00000197757|P09630-2|HOXC6 nc|ENSG00000197757|P09630-2|HOXC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8733215332031 3 388.539127 1162.59555 -0.38488 -0.00014954 0.82384 0.00032009 0.43896 0.00017055 388.8741831500342 23.992 0.26717 23.992 23.832 24.099 0 25 12 3 0 0 0 0.73115 1 12281 12281 0.45452 0 1 498940 17381 9999 11984 12195 20550 20550 0.020757985407726665 GVGYSFFQ 8 Unmodified _GVGYSFFQ_ 0 0 0 ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-4|MCF2 ENSG00000101977|ENST00000519895|MCF2 ENSG00000101977|ENST00000519895|MCF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7137756347656 2 452.713611 903.412668 NaN NaN NaN NaN NaN NaN NaN 19.836 1 19.836 19.336 20.336 0 0 0 0 0.97444 1 9948 9948 0.79363 0 1 17382 2004 11985 12196 20551 20551 -0.04290148573716124 GVHAFIYQ 8 Unmodified _GVHAFIYQ_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7444152832031 2 467.742702 933.470852 0.36155 0.00016911 -0.50564 -0.00023651 -0.14409 -6.7397E-05 467.74239232154935 52.044 0.56139 51.61 51.381 51.942 -0.43367 86 28 4 0 0 0 0.70131 1 28224 28224 17.087 2.5049 1 327480000 + 17383 22776 11986 12197 20552 20552 0.0014553307156575102 GVHEPKDKLL 10 Unmodified _GVHEPKDKLL_ 0 0 0 REV__ENSG00000135070|ENST00000375991|ISCA1 REV__ENSG00000135070|ENST00000375991|ISCA1 MSMS AL20221201_MKP_PDAC_01 4 568.328125 2 568.327131 1134.63971 NaN NaN NaN NaN NaN NaN NaN 20.985 1 18.292 17.792 18.792 -2.693 0 0 0 0.99091 1 11203 11203 1.6526 0 1 + 17384 20036 11987 12198 20553 20553 0.07777389914440391 GVHEWTRDW 9 Unmodified _GVHEWTRDW_ 0 0 0 REV__ENST00000575284.5_1_17:4636491-4636566:+|nuORF REV__ENST00000575284.5_1_17:4636491-4636566:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8520812988281 3 395.852712 1184.53631 NaN NaN NaN NaN NaN NaN NaN 18.994 1 19.017 18.517 19.517 0.023106 0 0 0 0.85737 1 9558 9558 0.26902 0 1 + 17385 29016 11988 12199 20554 20554 -0.0485809747337953 GVHFLGRP 8 Unmodified _GVHFLGRP_ 0 0 0 ENST00000389682.7_1_2:122513270-122513333:+|nuORF ENST00000389682.7_1_2:122513270-122513333:+|nuORF ENST00000389682.7_1_2:122513270-122513333:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7520141601562 2 441.750862 881.487171 0.90915 0.00040162 1.5053 0.00066498 2.4145 0.0010666 441.7511129702312 58.498 0.21236 58.437 58.313 58.526 -0.060719 22 10 3 0 0 0 0.80143 1 31871 31871 5.7604 0 1 3077100 17386 12648 11989 12200 20555 20555 0.04168659028323418 GVHGGAGR 8 Unmodified _GVHGGAGR_ 0 0 0 REV__ENST00000485557.5_1_6:31939740-31939914:-|nuORF REV__ENST00000485557.5_1_6:31939740-31939914:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 355.6900634765625 2 355.688262 709.36197 NaN NaN NaN NaN NaN NaN NaN 17.403 1 14.816 14.316 15.316 -2.5866 0 0 0 0.97444 1 9096 9096 2.8892 0 1 + 17387 27781 11990 12201 20556 20556 -0.004336331080480704 GVHGPEGFHY 10 Unmodified _GVHGPEGFHY_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.17041015625 3 367.170041 1098.48829 0.89748 0.00032953 0.67747 0.00024875 1.575 0.00057828 367.1702785556038 24.427 0.30901 21.6 21.486 21.795 -2.8273 24 17 2 0 0 0 0.5905 1 13298 13298 6.6304 0 1 6618600 17388 776 11991 12202 20557 20557 -0.057011713934116415 GVHGPHHH 8 Unmodified _GVHGPHHH_ 0 0 0 REV__ENSG00000152977|ENST00000282928|ZIC1 REV__ENSG00000152977|ENST00000282928|ZIC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2125549316406 2 439.212435 876.410317 NaN NaN NaN NaN NaN NaN NaN 15.304 1 15.29 14.79 15.79 -0.014067 0 0 0 0.97444 1 7504 7504 0.79363 0 1 + 17389 21144 11992 12203 20558 20558 -0.032831394681579695 GVHHCGTE 8 Unmodified _GVHHCGTE_ 0 0 0 REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.1775512695312 2 420.176869 838.339186 0.22698 9.5373E-05 0.58694 0.00024662 0.81392 0.00034199 420.17685339130236 42.321 0.18283 42.321 42.218 42.401 0 12 8 2 0 0 0 0.80975 1 22919 22919 0.79363 0 1 1490400 + 17390 16718 11993 12204 20559 20559 -0.0864502028782681 GVHHHIPRR 9 Unmodified _GVHHHIPRR_ 0 0 0 REV__nc|ENSG00000049323|Q14766-2|LTBP1 REV__nc|ENSG00000049323|Q14766-2|LTBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9069213867188 3 370.212686 1107.61623 0.40056 0.00014829 2.9302 0.0010848 3.3307 0.0012331 370.2134656289992 36.822 0.22554 36.822 36.732 36.958 0 14 10 2 0 0 0 0.21819 1 19522 19522 1.0715 0.29493 1 740750 + 17391 17249 11994 12205 20560 20560 0.06672433711128178 GVHHLFFG 8 Unmodified _GVHHLFFG_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2383117675781 2 457.237587 912.460622 NaN NaN NaN NaN NaN NaN NaN 26.668 1 26.668 26.168 27.168 0 0 0 0 0.97444 1 13718 13718 2.8892 0 1 + 17392 19793 11995 12206 20561 20561 0.000889701369942486 GVHHYKFTF 9 Unmodified _GVHHYKFTF_ 0 0 0 REV__ENSG00000101856|ENST00000217971|PGRMC1 REV__ENSG00000101856|ENST00000217971|PGRMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5319213867188 3 379.194298 1134.56106 NaN NaN NaN NaN NaN NaN NaN 16.554 1 16.559 16.059 17.059 0.0050564 0 0 0 0.84369 1 8306 8306 1.1933 0.68739 1 + 17393 18197 11996 12207 20562 20562 -0.0008341760001258081 GVHIRKCD 8 Unmodified _GVHIRKCD_ 0 0 0 REV__ENSG00000197472|ENST00000339986|ZNF695 REV__ENSG00000197472|ENST00000339986|ZNF695 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.7388000488281 2 464.245086 926.47562 0.45492 0.00021119 0.26652 0.00012373 0.72144 0.00033492 464.2452124051842 32.984 0.29724 29.127 28.904 29.202 -3.8562 26 17 2 0 0 0 8.7369 1 18725 18725 11.64 5.2862 1 23601000 + 17394 23930 11997 12208 20563 20563 0.00944093942678137 GVHLHTFSCSS 11 Unmodified _GVHLHTFSCSS_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1814270019531 3 392.181841 1173.52369 -0.53223 -0.00020873 -0.45846 -0.0001798 -0.99069 -0.00038853 392.18162303212017 26.069 0.11964 26.069 26.006 26.125 0 8 5 2 0 0 0 0.70701 1 13397 13397 1.4551 0 1 1485300 17395 5800 11998 12209 20564 20564 -0.05612876927943944 GVHLQFVNF 9 Unmodified _GVHLQFVNF_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MSMS AL20221201_MKP_PDAC_01 4 353.8658142089844 3 354.190665 1059.55016 NaN NaN NaN NaN NaN NaN NaN 12.057 1 9.5753 9.0753 10.075 -2.482 0 0 0 0.84369 1 6081 6081 1.1933 0 1 17396 7246 11999 12210 20565 20565 0.022771800257032737 GVHLSLSSNTI 11 Unmodified _GVHLSLSSNTI_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.80615234375 2 564.306395 1126.59824 1.4239 0.0008035 0.73177 0.00041294 2.1556 0.0012164 564.3067081499624 79.762 1.2131 73.587 72.68 73.893 -6.1757 95 70 2 0 0 0 0.2603 1 51789 51789 28.495 28.495 1 12331000 + 17397 22523 12000 12211 20566 20566 0.04000209155105949 GVHNTVNQHPL 11 Unmodified _GVHNTVNQHPL_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.31591796875 2 608.315086 1214.61562 NaN NaN NaN NaN NaN NaN NaN 62.538 1 62.538 62.038 63.038 0 0 0 0 0.93969 1 34883 34883 2.7352 1.2533 1 + 17398 29498 12001 12212 20567 20567 0.01689549480761343 GVHQLEKVDG 10 Unmodified _GVHQLEKVDG_ 0 0 0 nc|ENSG00000188487|Q1MX18-6|INSC;ENSG00000188487|ENST00000379556|INSC;nc|ENSG00000188487|Q1MX18-5|INSC;nc|ENSG00000188487|Q1MX18|INSC nc|ENSG00000188487|Q1MX18-6|INSC nc|ENSG00000188487|Q1MX18-6|INSC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2850341796875 2 541.285463 1080.55637 -0.73227 -0.00039637 0.95413 0.00051646 0.22185 0.00012009 541.2860263088997 15.15 0.1065 15.136 15.08 15.187 -0.014066 47 36 2 0 0 0 0.71276 1 7396 7396 1.4819 0.15237 1 461750 17399 9661 12002 12213 20568 20568 0.019316534665676954 GVHRVRVDF 9 Unmodified _GVHRVRVDF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS AL20221201_MKP_PDAC_01 4 362.2056884765625 3 362.205197 1083.59376 NaN NaN NaN NaN NaN NaN NaN 89.583 1 83.407 82.907 83.907 -6.1757 0 0 0 0.73776 1 59138 59138 8.1555 3.2585 1 17400 10887 12003 12214 20569 20569 0.05530789522822488 GVHSGPAH 8 Unmodified _GVHSGPAH_ 0 0 0 ENST00000589389.5_1_16:4854724-4855165:-|nuORF ENST00000589389.5_1_16:4854724-4855165:-|nuORF ENST00000589389.5_1_16:4854724-4855165:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.1897888183594 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 95.766 1 89.59 89.09 90.09 -6.1757 0 0 0 0.95607 1 63436 63436 9.3474 3.587 1 17401 15669 12004 12215 20570 20570 -0.028130528279234568 GVHSGPHL 8 Unmodified _GVHSGPHL_ 0 0 0 ENST00000510151.5_1_5:175490727-175501730:+|nuORF ENST00000510151.5_1_5:175490727-175501730:+|nuORF ENST00000510151.5_1_5:175490727-175501730:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2136535644531 2 402.211569 802.408586 NaN NaN NaN NaN NaN NaN NaN 19.86 1 19.868 19.368 20.368 0.0078487 0 0 0 0.97444 1 10114 10114 2.8892 0 1 17402 14582 12005 12216 20571 20571 -0.0005219327676968533 GVHTSLLL 8 Unmodified _GVHTSLLL_ 0 0 0 ENST00000421997.5_1_1:95145158-95285609:-|nuORF ENST00000421997.5_1_1:95145158-95285609:-|nuORF ENST00000421997.5_1_1:95145158-95285609:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.7745666503906 2 420.252903 838.491253 0.077156 3.2425E-05 0.2787 0.00011712 0.35585 0.00014955 420.2529611162182 39.551 0.12664 39.551 39.448 39.575 0 8 5 2 0 0 0 8.7369 1 21165 21165 0.79363 0.79363 1 962530 17403 13114 12006 12217 20572 20572 0.06554703731376321 GVHVMLEKPE 10 Unmodified _GVHVMLEKPE_ 0 0 0 REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2012023925781 3 380.202353 1137.58523 -0.33823 -0.00012859 -1.9179 -0.00072918 -2.2561 -0.00085778 380.201619126016 23.097 0.29417 23.097 22.888 23.182 0 26 15 2 0 0 0 0.7191 1 11752 11752 0.77653 0.078866 1 451020 + 17404 21552 12007 12218 20573 20573 0.021940547713711567 GVHWAGQAHPL 11 Unmodified _GVHWAGQAHPL_ 0 0 0 ENST00000528322.6_1_17:27448739-27467390:-|nuORF ENST00000528322.6_1_17:27448739-27467390:-|nuORF ENST00000528322.6_1_17:27448739-27467390:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2016296386719 3 391.536835 1171.58868 NaN NaN NaN NaN NaN NaN NaN 44.705 1 44.389 43.889 44.889 -0.31585 0 0 0 0.84159 1 23858 23858 5.0475 0 1 17405 14855 12008 12219 20574 20574 0.009744856602310392 GVHWGVDAQTG 11 Unmodified _GVHWGVDAQTG_ 0 0 0 REV__ENST00000320531.2_1_7:73279426-73279747:+|nuORF REV__ENST00000320531.2_1_7:73279426-73279747:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.182373046875 3 376.180717 1125.52032 NaN NaN NaN NaN NaN NaN NaN 19.579 1 19.579 19.079 20.079 0 0 0 0 0.94184 1 9800 9800 0.40827 0.17242 1 + 17406 25500 12009 12220 20575 20575 -0.03741803710295244 GVHYCYWV 8 Unmodified _GVHYCYWV_ 0 0 0 REV__ENSG00000128203|ENST00000215906|ASPHD2 REV__ENSG00000128203|ENST00000215906|ASPHD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7264404296875 2 513.728738 1025.44292 NaN NaN NaN NaN NaN NaN NaN 60.777 1 60.777 60.277 61.277 0 0 0 0 0.97444 1 33893 33893 2.8892 0 1 + 17407 19601 12010 12221 20576 20576 -0.06878113180187029 GVHYEDACGEL 11 Unmodified _GVHYEDACGEL_ 0 0 0 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant;ENSG00000118160|ENST00000236877|SLC8A2 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7514038085938 2 596.750595 1191.48664 -0.53119 -0.00031699 0.97975 0.00058467 0.44856 0.00026768 596.7508765937117 19.006 0.30739 19.006 18.786 19.094 0 49 23 3 0 0 0 0.73115 1 9436 9436 1.3295 0 1 714500 17408 3352 12011 12222 20577 20577 -0.10144593264340074 GVICFWSMCL 10 Unmodified _GVICFWSMCL_ 0 0 0 ENST00000438298.6_1_6:111895866-111897584:+|nuORF ENST00000438298.6_1_6:111895866-111897584:+|nuORF ENST00000438298.6_1_6:111895866-111897584:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2255249023438 3 386.843003 1157.50718 -0.0035405 -1.3696E-06 2.9662 0.0011474 2.9626 0.0011461 386.8438945488613 37.744 0.10131 37.744 37.662 37.764 0 6 4 2 0 0 0 0.23981 1 20087 20087 0.15932 0.15932 1 484330 17409 13362 12012 12223 20578 20578 -0.06527417409893133 GVIDAERPAGP 11 Unmodified _GVIDAERPAGP_ 0 0 0 REV__nc|ENSG00000181392|Q8N205-2|SYNE4 REV__nc|ENSG00000181392|Q8N205-2|SYNE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1930541992188 3 361.192734 1080.55637 -0.5777 -0.00020866 0.737 0.0002662 0.1593 5.7538E-05 361.1930315751396 15.491 0.36051 15.477 15.35 15.711 -0.014067 167 127 2 0 0 0 0.72952 1 7553 7553 0.50596 0 1 895720 + 17410 23202 12013 12224 20579 20579 0.019316534665676954 GVIDAERPAGP 11 Unmodified _GVIDAERPAGP_ 0 0 0 REV__nc|ENSG00000181392|Q8N205-2|SYNE4 REV__nc|ENSG00000181392|Q8N205-2|SYNE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.1933898925781 3 361.192734 1080.55637 -0.034227 -1.2362E-05 0.97648 0.0003527 0.94225 0.00034033 361.19311500868724 15.035 0.55331 15.041 14.949 15.503 0.0057774 60 33 2 0 0 0 0.72952 1 7720 7720 0.50596 0 1 4398500 + 17411 23202 12013 12224 20580 20580 0.019316534665676954 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2826538085938 2 522.279649 1042.54475 0.30576 0.00015969 2.3193 0.0012113 2.625 0.001371 522.2810129782927 51.804 0.24303 51.804 51.665 51.908 0 36 10 4 0 0 0 0.043729 1 28613 28613 61.357 35.958 1 30237000 17412 1289 12014 12225 20581 20581 0.025174564432063562 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.27734375 2 522.279649 1042.54475 1.3644 0.00071261 -1.1052 -0.0005772 0.25926 0.00013541 522.2790916963808 59.124 0.408 53.049 52.835 53.243 -6.0745 73 22 4 0 0 0 0.11755 2 37811 37811;37936 43.858 28.011 1 117280000 17413 1289 12014 12225 20582;20583 20582 0.025174564432063562 GVIDGHIYAV 10 Unmodified _GVIDGHIYAV_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.279649 1042.54475 0.25544 0.00013341 2.2844 0.0011931 2.5398 0.0013265 522.2813148702622 51.994 0.086201 51.936 51.875 51.961 -0.058914 0.055471 -0.00020408 NaN 61.357 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1128000 17414 1289 12014 12225 0.025174564432063562 GVIDRDTASSI 11 Unmodified _GVIDRDTASSI_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5315551757812 3 378.531415 1132.57242 -0.55522 -0.00021017 0.72663 0.00027505 0.17141 6.4883E-05 378.5316804465158 15.095 0.19978 15.081 14.962 15.162 -0.014067 168 65 3 0 0 0 0.7326 1 7433 7433 0.40827 0 1 1576400 17415 6155;16276 12015 12226 20584 20584 0.011433149128151854 GVIETDLSKI 10 Unmodified _GVIETDLSKI_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.8064575195312 2 537.805697 1073.59684 -0.16712 -8.9879E-05 2.1861 0.0011757 2.019 0.0010858 537.806988052227 37.193 0.19807 37.214 37.108 37.306 0.021545 13 8 2 0 0 0 0.54684 1 19740 19740 13.906 0.39817 1 971550 17416 1879 12016 12227 20585 20585 0.06298575066330159 GVIFPQSARL 10 Unmodified _GVIFPQSARL_ 0 0 0 REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF REV__ENST00000574857.1_1_17:2267300-2267525:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.1991882324219 3 363.213469 1086.61858 -0.16069 -5.8363E-05 1.1841 0.00043007 1.0234 0.00037171 363.2140462235563 32.686 0.2213 32.716 32.562 32.784 0.029743 13 8 2 0 0 0 0.23489 1 17179 17179 0.77653 0 1 2096100 + 17417 29010 12017 12228 20586 20586 0.07873424605554646 GVIGGLKF 8 Unmodified _GVIGGLKF_ 0 0 0 nc|ENSG00000198590|Q8IVJ8-3|APRG1 nc|ENSG00000198590|Q8IVJ8-3|APRG1 nc|ENSG00000198590|Q8IVJ8-3|APRG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2227783203125 2 395.744714 789.474875 -0.059395 -2.3505E-05 -0.96218 -0.00038078 -1.0216 -0.00040428 395.7441236925026 34.624 0.2128 34.651 34.54 34.753 0.027401 14 9 2 0 0 0 8.7369 1 18257 18257 6.3541 3.4649 1 2627900 17418 16493 12018 12229 20587 20587 0.07171622565272173 GVIGGLKF 8 Unmodified _GVIGGLKF_ 0 0 0 nc|ENSG00000198590|Q8IVJ8-3|APRG1 nc|ENSG00000198590|Q8IVJ8-3|APRG1 nc|ENSG00000198590|Q8IVJ8-3|APRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.7451477050781 2 395.744714 789.474875 0.60128 0.00023795 0.27487 0.00010878 0.87615 0.00034673 395.7448806306337 38.521 0.31006 34.153 33.98 34.29 -4.3689 25 19 2 0 0 0 0.57408 1 22719 22719 28.173 12.405 1 11309000 17419 16493 12018 12229 20588 20588 0.07171622565272173 GVIGKKKK 8 Unmodified _GVIGKKKK_ 0 0 0 nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 nc|ENSG00000151327|Q8N128|FAM177A1 MSMS AL20221201_MKP_PDAC_01 4 429.3009948730469 2 429.300188 856.585822 NaN NaN NaN NaN NaN NaN NaN 105.31 1 99.134 98.634 99.634 -6.1757 0 0 0 0.97444 1 70563 70563 0.79363 0.79363 1 17420 6104 12019 12230 20589 20589 0.15179262273363747 GVIGSYSVVL 10 Unmodified _GVIGSYSVVL_ 0 0 0 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2846069335938 2 497.2844 992.554247 -0.19717 -9.8051E-05 0.48241 0.00023989 0.28523 0.00014184 497.2846779464804 48.881 0.47741 48.881 48.491 48.969 0 45 22 3 0 0 0 0.31022 1 26849 26849 26.884 5.3467 1 7959800 17421 869 12020 12231 20590 20590 0.05767224728754172 GVIGSYSVVL 10 Unmodified _GVIGSYSVVL_ 0 0 0 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 ENSG00000064115|ENST00000343028|TM7SF3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.2844 992.554247 0.43805 0.00021784 0.53224 0.00026468 0.97029 0.00048251 497.2843691217838 49.138 0.20607 48.766 48.654 48.86 -0.37172 -0.057336 3.8948E-05 NaN 26.884 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1286900 17422 869 12020 12231 0.05767224728754172 GVIHHPHFY 9 Unmodified _GVIHHPHFY_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3037719726562 2 553.780151 1105.54575 -0.29738 -0.00016468 -4.4166 -0.0024458 -4.714 -0.0026105 553.7769686176383 28.477 0.12019 28.477 28.438 28.558 0 8 6 2 0 0 0 0.203 1 14695 14695 5.2307 1.2863 1 795790 + 17423 21114 12021 12232 20591 20591 -0.002802843971949187 GVIIYMMFI 9 Unmodified _GVIIYMMFI_ 0 0 0 ENST00000371146.5_1_1:62916945-62917257:+|nuORF ENST00000371146.5_1_1:62916945-62917257:+|nuORF ENST00000371146.5_1_1:62916945-62917257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7911987304688 2 543.789949 1085.56535 0.29025 0.00015784 -0.1493 -8.1186E-05 0.14096 7.665E-05 543.7898318310514 83.677 0.40939 83.179 82.985 83.395 -0.49751 39 16 3 0 0 0 0.53666 1 45887 45887 5.2307 0 1 2205100 17424 12353 12022 12233 20592 20592 0.02598587507054617 GVIKAGFAG 9 Unmodified _GVIKAGFAG_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000418944.1_1_2:110941632-110941998:+|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MSMS AL20221201_MKP_PDAC_01 4 410.2398376464844 2 410.239796 818.465038 NaN NaN NaN NaN NaN NaN NaN 14.313 1 11.811 11.311 12.311 -2.5029 0 0 0 0.84564 1 7261 7261 2.0598 1.2661 1 17425 3082 12023 12234 20593 20593 0.04854434559899801 GVIKFLLGDK 10 Unmodified _GVIKFLLGDK_ 0 0 0 ENSG00000180988|ENST00000317037|OR52N2 ENSG00000180988|ENST00000317037|OR52N2 ENSG00000180988|ENST00000317037|OR52N2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3389282226562 2 545.336967 1088.65938 NaN NaN NaN NaN NaN NaN NaN 19.173 1 19.181 18.681 19.681 0.0078487 0 0 0 0.9997 1 9744 9744 1.6526 0 1 17426 8938 12024 12235 20594 20594 0.11859765925191823 GVIKKLYYN 9 Unmodified _GVIKKLYYN_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8845825195312 3 366.54997 1096.62808 NaN NaN NaN NaN NaN NaN NaN 17.82 1 17.834 17.334 18.334 0.013865 0 0 0 0.85737 1 8891 8891 0.26902 0.1097 1 17427 4999 12025 12236 20595 20595 0.0836319289110179 GVIKMTHCESH 11 Unmodified _GVIKMTHCESH_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.52978515625 3 414.530364 1240.56926 -0.57975 -0.00024033 0.7565 0.00031359 0.17675 7.3268E-05 414.5306001754889 18.709 0.15263 18.709 18.634 18.786 0 19 14 2 0 0 0 0.72952 1 9336 9336 0.50596 0 1 575790 17428 1185 12026 12237 20596 20596 -0.041399747371997364 GVIKQGWLHK 10 Unmodified _GVIKQGWLHK_ 0 0 0 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant;ENSG00000147251|ENST00000276202|DOCK11 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.343505859375 2 583.345658 1164.67676 NaN NaN NaN NaN NaN NaN NaN 30.456 1 30.486 29.986 30.986 0.030106 0 0 0 0.92825 1 15924 15924 6.7232 5.3936 1 17429 240 12027 12238 20597 20597 0.1010110625084053 GVINFQRTIL 10 Unmodified _GVINFQRTIL_ 0 0 0 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1920776367188 3 387.564391 1159.67134 0.63053 0.00024437 0.42254 0.00016376 1.0531 0.00040813 387.5646785495258 47.449 0.28124 47.41 47.237 47.518 -0.038647 29 12 3 0 0 0 0.23343 1 25511 25511 10.8 0.64894 1 6210000 17430 2697 12028 12239 20598 20598 0.09789382668395774 GVIPNAFEHI 10 Unmodified _GVIPNAFEHI_ 0 0 0 ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1978149414062 3 366.197708 1095.57129 0.33287 0.0001219 -0.065847 -2.4113E-05 0.26702 9.7782E-05 366.19764563803085 31.058 0.31254 30.956 30.767 31.08 -0.10269 33 12 4 0 0 0 0.71123 1 16198 16198 0.69767 0.23933 1 17620000 17431 1395 12029 12240 20599 20599 0.027331453345595946 GVIPPGLSNGL 11 Unmodified _GVIPPGLSNGL_ 0 0 0 REV__ENSG00000165449|ENST00000395348|SLC16A9 REV__ENSG00000165449|ENST00000395348|SLC16A9 MSMS AL20221201_MKP_PDAC_01 4 512.2940673828125 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 14.72 1 12.217 11.717 12.717 -2.5029 0 0 0 0.94184 1 7496 7496 1.1933 0.39971 1 + 17432 22011 12030 12241 20600 20600 0.06566029477335178 GVIRSKRF 8 Unmodified _GVIRSKRF_ 0 0 0 REV__ENST00000513705.5_1_4:5205889-5347127:+|nuORF REV__ENST00000513705.5_1_4:5205889-5347127:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.2365417480469 2 481.798343 961.582134 0.2632 0.00012681 0.069229 3.3354E-05 0.33243 0.00016016 481.79840413659997 23.576 0.17721 20.748 20.613 20.791 -2.8273 12 9 2 0 0 0 8.7369 1 12726 12726 2.3027 0 1 2560100 + 17433 28182 12031 12242 20601 20601 0.0998059249951666 GVIVDVIKADY 11 Unmodified _GVIVDVIKADY_ 0 0 0 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.83544921875 2 596.334621 1190.65469 -0.014072 -8.3917E-06 -2.5746 -0.0015353 -2.5887 -0.0015437 596.3339104909273 62.358 0.38056 62.358 62.23 62.611 0 31 25 2 0 0 0 0.66428 1 34754 34754 7.609 0.88579 1 5454900 + 17434 16965 12032 12243 20602 20602 0.06698836991768076 GVIVDVIKADY 11 Unmodified _GVIVDVIKADY_ 0 0 0 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.3350219726562 2 596.334621 1190.65469 NaN NaN NaN NaN NaN NaN NaN 62.593 1 62.593 62.093 63.093 0 0 0 0 0.93613 1 34916 34916 5.2969 2.0156 1 + 17435 16965 12032 12243 20603 20603 0.06698836991768076 GVIVDVIKADY 11 Unmodified _GVIVDVIKADY_ 0 0 0 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 596.334621 1190.65469 0.64059 0.000382 -0.015008 -8.9497E-06 0.62558 0.00037305 596.8354512681924 62.725 0.077606 62.239 62.185 62.262 -0.48617 -0.059297 0.0021865 NaN 7.609 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2190100 + 17436 16965 12032 12243 0.06698836991768076 GVIVGGHL 8 Unmodified _GVIVGGHL_ 0 0 0 ENST00000497824.5_1_1:156374348-156399265:-|nuORF ENST00000497824.5_1_1:156374348-156399265:-|nuORF ENST00000497824.5_1_1:156374348-156399265:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.226806640625 2 376.226688 750.438824 1.3912 0.00052341 -1.1992 -0.00045118 0.192 7.2234E-05 376.22636852810217 34.693 0.29525 30.598 30.457 30.752 -4.0951 40 17 3 0 0 0 0.80044 1 20068 20068 6.3541 3.4649 1 7893100 17437 14405 12033 12244 20604 20604 0.0536216538843064 GVIVWNRG 8 Unmodified _GVIVWNRG_ 0 0 0 ENST00000394583.7_1_1:90460696-90460780:+|nuORF ENST00000394583.7_1_1:90460696-90460780:+|nuORF ENST00000394583.7_1_1:90460696-90460780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7572937011719 2 450.756144 899.497735 0.78601 0.0003543 1.083 0.00048817 1.869 0.00084247 450.75661076521135 69.975 0.63216 70.006 69.826 70.458 0.030914 51 31 2 0 0 0 0.80624 1 38608 38608 2.8892 0.31174 1 4218800 17438 12745 12034 12245 20605 20605 0.043966416827515786 GVKCEKKI 8 Unmodified _GVKCEKKI_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE;ENST00000485526.1_1_7:12370811-12373207:-|nuORF;nc|ENSG00000146530|Q8N2E2-3|VWDE ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 905.6046142578125 1 904.528449 903.521173 -0.33712 -0.00030494 -0.94693 -0.00085653 -1.2841 -0.0011615 904.527380658512 106.15 0.1639 106.11 106.05 106.21 -0.048103 6 5 2 0 0 0 0.80975 1 58865 58865 0.79363 0 1 1304500 17439 5785 12035 12246 20606 20606 0.06555319405049431 GVKCILSELH 10 Unmodified _GVKCILSELH_ 0 0 0 REV__ENSG00000136937|ENST00000375147|NCBP1 REV__ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8704528808594 3 366.870715 1097.59032 -0.60302 -0.00022123 0.12206 4.4779E-05 -0.48097 -0.00017645 366.8708337588619 15.799 0.076971 15.799 15.753 15.829 0 25 15 2 0 0 0 0.71123 1 7645 7645 1.9064 1.2087 1 420840 + 17440 20202 12036 12247 20607 20607 0.045423586339666144 GVKDQQTK 8 Unmodified _GVKDQQTK_ 0 0 0 ENST00000340149.6_1_11:77929679-77929994:-|nuORF ENST00000340149.6_1_11:77929679-77929994:-|nuORF ENST00000340149.6_1_11:77929679-77929994:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2491455078125 2 452.248349 902.482145 NaN NaN NaN NaN NaN NaN NaN 0.85594 1 0.78265 0.28265 1.2827 -0.073289 0 0 0 0.97444 1 431 431 2.3027 0 1 17441 11959 12037 12248 20608 20608 0.0270031037505305 GVKESLCAK 9 Unmodified _GVKESLCAK_ 0 0 0 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7533874511719 2 467.754953 933.495352 -0.12111 -5.6648E-05 -2.4759 -0.0011581 -2.597 -0.0012148 467.75391238844696 18.385 0.0853 18.385 18.352 18.437 0 18 12 2 0 0 0 0.41742 1 9149 9149 11.64 3.047 1 682350 17442 9037 12038 12249 20609 20609 0.025944251627720405 GVKESRYDP 9 Unmodified _GVKESRYDP_ 0 0 0 REV__ENSG00000089163|ENST00000202967|SIRT4 REV__ENSG00000089163|ENST00000202967|SIRT4 MSMS AL20221201_MKP_PDAC_01 4 350.8455810546875 3 350.845334 1049.51417 NaN NaN NaN NaN NaN NaN NaN 16.93 1 14.345 13.845 14.845 -2.5849 0 0 0 0.7243 1 8809 8809 5.2969 0.39987 1 + 17443 17836 12039 12250 20610 20610 -0.008603219418091612 GVKGAAAK 8 Unmodified _GVKGAAAK_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2184143066406 2 351.218863 700.423173 NaN NaN NaN NaN NaN NaN NaN 0.7673 1 0.69401 0.19401 1.194 -0.073289 0 0 0 0.97444 1 383 383 0.79363 0 1 + 17444 20210 12040 12251 20611 20611 0.06097878871366902 GVKGALRH 8 Unmodified _GVKGALRH_ 0 0 0 REV__ENST00000475762.5_1_17:56772326-56801433:+|nuORF REV__ENST00000475762.5_1_17:56772326-56801433:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.2426452636719 2 419.256311 836.49807 1.4391 0.00060335 -0.40094 -0.0001681 1.0382 0.00043526 419.25617945179624 20.178 0.33109 17.522 17.351 17.682 -2.6564 33 23 2 0 0 0 8.7369 1 10644 10644 2.8892 0 1 5048000 + 17445 27582 12041 12252 20612 20612 0.07328061402597541 GVKHWGKL 8 Unmodified _GVKHWGKL_ 0 0 0 REV__ENST00000585051.1_1_17:45897093-45897692:-|nuORF REV__ENST00000585051.1_1_17:45897093-45897692:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.7734069824219 2 462.774337 923.534121 NaN NaN NaN NaN NaN NaN NaN 20.862 1 18.169 17.669 18.669 -2.693 0 0 0 0.97444 1 11134 11134 5.2307 0.90143 1 + 17446 29088 12042 12253 20613 20613 0.06929518579454452 GVKKLKKYE 9 Unmodified _GVKKLKKYE_ 0 0 0 REV__ENSG00000144857|ENST00000682979|BOC REV__ENSG00000144857|ENST00000682979|BOC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8978271484375 3 364.89737 1091.67028 NaN NaN NaN NaN NaN NaN NaN 21.611 1 21.611 21.111 22.111 0 0 0 0 0.85737 1 10947 10947 0.26902 0 1 + 17447 20743 12043 12254 20614 20614 0.12811168299458586 GVKNEKTQSK 10 Unmodified _GVKNEKTQSK_ 0 0 0 REV__nc|ENSG00000062194|Q86WP2-4|GPBP1 REV__nc|ENSG00000062194|Q86WP2-4|GPBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.5274353027344 3 373.543655 1117.60914 1.5876 0.00059305 1.0979 0.00041011 2.6855 0.0010032 373.54440707266247 21.862 0.22382 19.127 18.995 19.219 -2.7348 16 12 2 0 0 0 0.23693 1 11772 11772 3.3196 0.82116 1 2331100 + 17448 17338 12044 12255 20615 20615 0.05503611529366026 GVKPRAGP 8 Unmodified _GVKPRAGP_ 0 0 0 ENST00000462554.2_2_20:60878367-60878463:+|nuORF ENST00000462554.2_2_20:60878367-60878463:+|nuORF ENST00000462554.2_2_20:60878367-60878463:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.9041442871094 2 391.237587 780.460622 0.61353 0.00024004 -0.030856 -1.2072E-05 0.58268 0.00022796 391.2376267881576 22.708 0.30692 19.93 19.81 20.117 -2.7784 28 23 2 0 0 0 0.80044 1 12196 12196 6.3541 0.59368 1 3483900 17449 13681 12045 12256 20616 20616 0.06160970136988908 GVKQTSLL 8 Unmodified _GVKQTSLL_ 0 0 0 REV__ENST00000473501.1_1_3:196755203-196755518:-|nuORF REV__ENST00000473501.1_1_3:196755203-196755518:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2582702636719 2 423.258185 844.501818 NaN NaN NaN NaN NaN NaN NaN 86.029 1 79.854 79.354 80.354 -6.1757 0 0 0 0.97348 1 56698 56698 5.7604 0.52976 1 + 17450 27542 12046 12257 20617 20617 0.07334686385820532 GVKRPIQLKI 10 Unmodified _GVKRPIQLKI_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3865356445312 2 576.384783 1150.75501 NaN NaN NaN NaN NaN NaN NaN 27.115 1 27.144 26.644 27.644 0.028664 0 0 0 1.0019 1 14085 14085 0.45834 0.10771 1 17451 7874 12047 12258 20618 20618 0.18566538836080326 GVKSLYERM 9 Unmodified _GVKSLYERM_ 0 0 0 REV__ENST00000412649.5_1_22:19170842-19171202:-|nuORF REV__ENST00000412649.5_1_22:19170842-19171202:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8615417480469 3 361.526948 1081.55902 -0.48986 -0.0001771 0.96773 0.00034986 0.47787 0.00017276 361.52706399668585 18.949 0.094908 18.949 18.909 19.004 0 16 10 2 0 0 0 0.59218 1 9472 9472 0.96228 0 1 542160 + 17452 26724 12048 12259 20619 20619 0.021497855998632076 GVKSLYERM 9 Unmodified _GVKSLYERM_ 0 0 0 REV__ENST00000412649.5_1_22:19170842-19171202:-|nuORF REV__ENST00000412649.5_1_22:19170842-19171202:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.526948 1081.55902 -0.48986 -0.0001771 0.96773 0.00034986 0.47787 0.00017276 361.52706399668585 18.949 0.094908 18.949 18.909 19.004 0 0 0 NaN 0.96228 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 542160 + 17453 26724 12048 12259 0.021497855998632076 GVKTKQIRK 9 Unmodified _GVKTKQIRK_ 0 0 0 ENSG00000181009|ENST00000641181|OR52N5;nc|ENSG00000181109|Q8NH57|OR52P1 ENSG00000181009|ENST00000641181|OR52N5 ENSG00000181009|ENST00000641181|OR52N5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3462524414062 2 529.345658 1056.67676 NaN NaN NaN NaN NaN NaN NaN 18.894 1 18.9 18.4 19.4 0.0060463 0 0 0 0.85737 1 9591 9591 0.6015 0 1 17454 8941 12049 12260 20620 20620 0.15069106250848563 GVKVNEKNTY 10 Unmodified _GVKVNEKNTY_ 0 0 0 ENST00000474241.1_1_1:98157206-98165091:-|nuORF ENST00000474241.1_1_1:98157206-98165091:-|nuORF ENST00000474241.1_1_1:98157206-98165091:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5403442382812 3 384.540022 1150.59824 0.35193 0.00013533 0.34358 0.00013212 0.69552 0.00026745 384.5401062584012 36.864 0.26729 36.864 36.71 36.977 0 20 12 2 0 0 0 0.71123 1 19631 19631 0.69767 0.07084 1 3207300 17455 13935 12050 12261 20621 20621 0.02896209155096585 GVKWMRPHE 9 Unmodified _GVKWMRPHE_ 0 0 0 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 ENSG00000182472|ENST00000328867|CAPN12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5308532714844 3 380.530804 1138.57058 NaN NaN NaN NaN NaN NaN NaN 17.592 1 17.592 17.092 18.092 0 0 0 0 0.85737 1 8680 8680 0.26902 0 1 17456 9056 12051 12262 20622 20622 0.006840274138539826 GVKYEKLY 8 Unmodified _GVKYEKLY_ 0 0 0 ENST00000497004.5_1_3:158289136-158315942:+|nuORF ENST00000497004.5_1_3:158289136-158315942:+|nuORF ENST00000497004.5_1_3:158289136-158315942:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7809448242188 2 500.279118 998.543683 0.20287 0.00010149 0.80071 0.00040058 1.0036 0.00050207 500.2797150022968 91.985 0.35043 91.504 91.37 91.721 -0.48093 30 19 2 0 0 0 0.80624 2 50276 50276;50373 2.8892 0 1 627960 17457 14391 12052 12263 20623;20624 20623 0.04435242074328016 GVKYFFYQV 9 Unmodified _GVKYFFYQV_ 0 0 0 REV__ENST00000459908.5_1_13:113512247-113512673:+|nuORF REV__ENST00000459908.5_1_13:113512247-113512673:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5823364257812 3 384.20257 1149.58588 -0.038224 -1.4686E-05 -2.2414 -0.00086116 -2.2796 -0.00087585 384.2014954311852 33.215 0.24373 33.244 33.117 33.361 0.028934 20 10 3 0 0 0 0.2188 1 17505 17505 1.0715 0.29493 1 2369800 + 17458 27284 12053 12264 20625 20625 0.017072174826807895 GVKYLGIWD 9 Unmodified _GVKYLGIWD_ 0 0 0 REV__ENSG00000132376|ENST00000421807|INPP5K REV__ENSG00000132376|ENST00000421807|INPP5K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8584594726562 3 350.858804 1049.55458 NaN NaN NaN NaN NaN NaN NaN 35.552 1 35.552 35.052 36.052 0 0 0 0 0.84564 1 18804 18804 1.0715 0.10919 1 + 17459 19847 12054 12265 20626 20626 0.031786444485987886 GVLAFAFEV 9 Unmodified _GVLAFAFEV_ 0 0 0 REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7618713378906 2 476.760561 951.506569 0.63498 0.00030273 1.0207 0.00048662 1.6557 0.00078935 476.7616463639593 63.93 0.46347 63.444 63.275 63.739 -0.48512 69 24 4 0 0 0 0.18465 1 34822 34822 24.674 1.5255 1 17068000 + 17460 17625 12055 12266 20627 20627 0.028875705285713593 GVLAFAFEV 9 Unmodified _GVLAFAFEV_ 0 0 0 REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2523193359375 2 476.760561 951.506569 0.63498 0.00030273 1.0207 0.00048662 1.6557 0.00078935 476.7616463639593 63.93 0.46347 63.444 63.275 63.739 -0.48512 69 24 4 0 0 0 0.203 1 34989 34989 9.3474 0 1 17068000 + 17461 17625 12055 12266 20628 20628 0.028875705285713593 GVLARVALI 9 Unmodified _GVLARVALI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.3057556152344 2 456.30547 910.596387 1.0724 0.00048936 -1.0906 -0.00049764 -0.018159 -8.2858E-06 456.30505681194916 65.667 0.32751 65.667 65.498 65.825 7.6294E-06 31 15 3 0 0 0 0.042911 1 35999 35999 48.346 6.2513 1 6723400 17462 1437;3789 12056 12267 20629 20629 0.137512449278006 GVLARVALI 9 Unmodified _GVLARVALI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.3053894042969 2 456.30547 910.596387 0.8846 0.00040365 0.33204 0.00015151 1.2166 0.00055516 456.30545786105944 92.526 0.35268 86.35 86.166 86.519 -6.1757 28 20 2 0 0 0 0.016184 1 61149 61149 67.344 9.8725 1 12191000 17463 1437;3789 12056 12267 20630 20630 0.137512449278006 GVLDGTRHKGR 11 Unmodified _GVLDGTRHKGR_ 0 0 0 REV__ENST00000568546.5_3_16:2029447-2029651:+|nuORF REV__ENST00000568546.5_3_16:2029447-2029651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2250671386719 3 399.226661 1194.65815 0.19089 7.6206E-05 -2.0826 -0.00083143 -1.8917 -0.00075522 399.22572989076724 54.835 0.37804 54.768 54.542 54.92 -0.066936 46 18 4 0 0 0 0.73114 1 29691 29691 1.3296 0.11481 1 15324000 + 17464 28945 12057 12268 20631 20631 0.0686094460897948 GVLDHTEAPG 10 Unmodified _GVLDHTEAPG_ 0 0 0 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2442626953125 2 498.243264 994.471974 NaN NaN NaN NaN NaN NaN NaN 19.927 1 19.935 19.435 20.435 0.0078487 0 0 0 0.98914 1 10150 10150 1.8442 0 1 + 17465 21567 12058 12269 20632 20632 -0.02548297350199391 GVLDRNILL 9 Unmodified _GVLDRNILL_ 0 0 0 REV__nc|ENSG00000142082|Q9NTG7-2|SIRT3 REV__nc|ENSG00000142082|Q9NTG7-2|SIRT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8117980957031 2 506.811116 1011.60768 0.36544 0.00018521 -0.1028 -5.2098E-05 0.26264 0.00013311 506.8109601928136 65.76 0.67288 59.584 59.304 59.977 -6.1757 107 39 4 0 0 0 0.022193 1 42587 42587 61.357 0.96792 1 160100000 + 17466 20560 12059 12270 20633 20633 0.10234022231293238 GVLEAGHL 8 Unmodified _GVLEAGHL_ 0 0 0 REV__ENSG00000139618|ENST00000380152|BRCA2 REV__ENSG00000139618|ENST00000380152|BRCA2 MSMS AL20221201_MKP_PDAC_01 4 397.8895263671875 2 398.221603 794.428653 NaN NaN NaN NaN NaN NaN NaN 15.1 1 12.573 12.073 13.073 -2.5273 0 0 0 0.9706 1 7720 7720 6.3541 0 1 + 17467 20418 12060 12271 20634 20634 0.023215576631855583 GVLEELGPWG 10 Unmodified _GVLEELGPWG_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7694702148438 2 528.771657 1055.52876 -0.18114 -9.5782E-05 -2.5066 -0.0013254 -2.6877 -0.0014212 528.7698777226424 18.816 0.16552 18.816 18.678 18.843 0 17 12 2 0 0 0 0.71123 1 9347 9347 1.6526 1.0511 1 416960 17468 9384 12061 12272 20635 20635 0.003217502063534994 GVLEHHTYGAL 11 Unmodified _GVLEHHTYGAL_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5404052734375 3 399.540134 1195.59857 0.33489 0.0001338 0.81834 0.00032696 1.1532 0.00046076 399.5403235199614 16.824 0.36932 14.267 13.983 14.353 -2.557 83 57 2 0 0 0 0.67922 1 8780 8780 2.8433 0 1 2786800 17469 10010 12062 12273 20636 20636 0.00859628874968621 GVLEPNII 8 Unmodified _GVLEPNII_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MSMS AL20221201_MKP_PDAC_01 4 427.7536315917969 2 427.752736 853.490919 NaN NaN NaN NaN NaN NaN NaN 17.452 1 14.865 14.365 15.365 -2.5866 0 0 0 0.93587 1 9126 9126 13.508 4.1604 1 + 17470 23295 12063 12274 20637 20637 0.0583128401152635 GVLEYGENCF 10 Unmodified _GVLEYGENCF_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2774047851562 2 565.744782 1129.47501 -0.35056 -0.00019833 -1.6327 -0.0009237 -1.9833 -0.001122 566.2444380193847 26.845 0.21021 26.845 26.699 26.909 0 19 9 3 0 0 0 0.23862 1 13839 13839 3.9444 1.3669 1 709340 + 17471 21984 12064 12275 20638 20638 -0.08454790287692049 GVLFHSSPAL 10 Unmodified _GVLFHSSPAL_ 0 0 0 nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1;ENSG00000111885|ENST00000368468|MAN1A1 ENSG00000111885|ENST00000368468|MAN1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2832641601562 2 514.282192 1026.54983 0.86264 0.00044364 0.42592 0.00021904 1.2886 0.00066269 514.2823531754722 80.182 0.67985 79.693 79.354 80.034 -0.48933 66 26 3 0 0 0 0.50944 1 43999 43999 15.847 0 1 2959400 17472 16119;2844 12065 12276 20639 20639 0.03761760305860662 GVLGIEDYSVS 11 Unmodified _GVLGIEDYSVS_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000464157.1_1_9:139902696-139903239:-|nuORF nc|ENSG00000107331|Q9BZC7|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7861328125 2 569.784961 1137.55537 NaN NaN NaN NaN NaN NaN NaN 20.32 1 20.33 19.83 20.83 0.010553 0 0 0 0.94165 1 10360 10360 1.3295 0.63916 1 17473 2490 12066 12277 20640 20640 -0.007906056930096383 GVLHQVMVLD 10 Unmodified _GVLHQVMVLD_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;nc|ENSG00000007923|Q9NVH1-3|DNAJC11;ENST00000465508.5_1_1:6695737-6697639:-|nuORF nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7974853515625 2 555.802434 1109.59032 -0.062327 -3.4641E-05 0.66174 0.0003678 0.59941 0.00033316 555.8026314555859 37.048 0.53205 36.798 36.604 37.136 -0.2497 49 22 4 0 0 0 0.54684 1 19556 19556 13.906 0 1 13278000 17474 370 12067 12278 20641 20641 0.03990358633973301 GVLIHCLKQL 10 Unmodified _GVLIHCLKQL_ 0 0 0 ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.S378Kfs*21|1|0.36|ENSG00000136546|chr2:166457029-166457030|-/A|frameshift_variant ENSG00000136546|ENST00000643258|SCN7A ENSG00000136546|ENST00000643258|SCN7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2249145507812 3 375.226722 1122.65834 1.2946 0.00048577 -2.3844 -0.00089469 -1.0898 -0.00040892 375.22615570989126 28.749 0.32143 25.601 25.38 25.701 -3.1482 27 15 2 0 0 0 0.42068 1 16010 16010 12.873 0 1 24553000 17475 4836 12068 12279 20642 20642 0.10191228284611498 GVLKILKKKA 10 Unmodified _GVLKILKKKA_ 0 0 0 REV__ENSG00000061794|ENST00000081029|MRPS35 REV__ENSG00000061794|ENST00000081029|MRPS35 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1098.276611328125 1 1097.77688 1096.7696 0.56773 0.00062324 0.92598 0.0010165 1.4937 0.0016398 1098.7788172242438 24.449 0.14015 24.473 24.37 24.51 0.024429 7 5 2 0 0 0 0.24007 1 12595 12595 0 0 1 2692700 + 17476 17334 12069 12280 20643 20643 0.22508610984209554 GVLKRLILL 9 Unmodified _GVLKRLILL_ 0 0 0 nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000472637.5_1_3:112724385-112732818:-|nuORF nc|ENSG00000163608|Q6NW34-2|NEPRO nc|ENSG00000163608|Q6NW34-2|NEPRO MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1025.230346679688 1 1024.72411 1023.71684 0.30107 0.00030851 0.7363 0.00075451 1.0374 0.001063 1024.7255740550643 51.77 0.16202 46.035 45.92 46.082 -5.7345 12 9 2 0 0 0 0.21889 1 32626 32626 0.6015 0.6015 1 39262000 17477 7027 12070 12281 20644 20644 0.20592652921436638 GVLLALPFGP 10 Unmodified _GVLLALPFGP_ 0 0 0 REV__ENSG00000060642|ENST00000674202|PIGV REV__ENSG00000060642|ENST00000674202|PIGV MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.3016967773438 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 41.301 1 41.299 40.799 41.799 -0.0017929 0 0 0 0.98914 1 22066 22066 1.8442 1.0506 1 + 17478 17328 12071 12282 20645 20645 0.09316422833660454 GVLMMVGLTLI 11 Unmodified _GVLMMVGLTLI_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.89306640625 3 382.892351 1145.65522 0.77707 0.00029754 -0.72682 -0.00027829 0.050254 1.9242E-05 382.8920725159218 49.55 0.89903 49.502 49.27 50.169 -0.048824 126 44 5 0 0 0 0.19546 2 26901 26901;27055 19.626 3.7559 1 498150000 + 17479 21885 12072 12283 20646;20647 20646 0.08822217115630338 GVLPEGHPQHL 11 Unmodified _GVLPEGHPQHL_ 0 0 0 REV__ENST00000368358.3_1_1:155253838-155255029:+|nuORF REV__ENST00000368358.3_1_1:155253838-155255029:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2102661132812 3 395.212128 1182.61456 -0.30786 -0.00012167 -0.70223 -0.00027753 -1.0101 -0.0003992 395.21105060363624 35.051 0.20399 34.828 34.691 34.895 -0.2224 19 8 3 0 0 0 0.68427 1 18366 18366 2.6312 0 1 1138400 + 17480 26008 12073 12284 20648 20648 0.030553351118669525 GVLPGKPQCW 10 Unmodified _GVLPGKPQCW_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1903076171875 3 362.191788 1083.55354 NaN NaN NaN NaN NaN NaN NaN 39.87 1 39.573 39.073 40.073 -0.29716 0 0 0 0.91523 1 21051 21051 3.8763 0 1 17481 5306 12074 12285 20649 20649 0.015101068080412006 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7724609375 2 455.77146 909.528367 0.28186 0.00012846 0.34304 0.00015635 0.62491 0.00028481 455.77150810700795 68.567 0.23502 68.087 67.967 68.202 -0.48071 18 10 2 0 0 0 0.12841 1 37484 37484 30.225 14.378 1 2326500 17482 9238;9236 12075 12286 20650 20650 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-SECPEP AL20221201_MKP_PDAC_01 4 455.589111328125 2 455.77146 909.528367 0.88104 0.00040155 1.3691 0.00062401 2.2502 0.0010256 455.77165251433547 75.61 0.36459 69.435 69.215 69.58 -6.1757 32 19 2 0 0 0 0.12183 1 49307 49307 34.102 12.356 1 9750800 17483 9238;9236 12075 12286 20651 20651 0.06998375277123614 GVLPNIQAV 9 Unmodified _GVLPNIQAV_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 455.77146 909.528367 0.62643 0.00028551 -1.004 -0.00045761 -0.3776 -0.0001721 455.770684210114 68.066 0.13822 68.066 68.008 68.146 0 -0.010385 -0.0010353 NaN 30.225 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 219150 17484 9238;9236 12075 12286 0.06998375277123614 GVLPTLPIGCL 11 Unmodified _GVLPTLPIGCL_ 0 0 0 nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8189697265625 2 541.817553 1081.62055 0.55145 0.00029879 2.0811 0.0011276 2.6325 0.0014263 541.8185963458701 43.16 0.17301 38.395 38.304 38.477 -4.7648 16 11 2 0 0 0 0.63851 1 26222 26222 9.3831 0 1 12789000 17485 16474 12076 12287 20652 20652 0.0830071729917563 GVLQHDQQRF 10 Unmodified _GVLQHDQQRF_ 0 0 0 REV__ENST00000480991.1_1_1:1597188-1601283:-|nuORF REV__ENST00000480991.1_1_1:1597188-1601283:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8779296875 3 409.879149 1226.61562 NaN NaN NaN NaN NaN NaN NaN 17.901 1 17.906 17.406 18.406 0.0050564 0 0 0 0.98914 1 9050 9050 0.77653 0.27058 1 + 17486 27684 12077 12288 20653 20653 0.011375494807452924 GVLQLLGG 8 Unmodified _GVLQLLGG_ 0 0 0 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7357177734375 2 378.734346 755.454139 NaN NaN NaN NaN NaN NaN NaN 38.299 1 38.316 37.816 38.816 0.01704 0 0 0 0.97444 1 20360 20360 0.79363 0 1 17487 2728 12078 12289 20654 20654 0.0666303218563371 GVLQLLGG 8 Unmodified _GVLQLLGG_ 0 0 0 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5787353515625 2 378.734346 755.454139 0.2683 0.00010161 2.1507 0.00081456 2.419 0.00091617 378.734976873784 39.43 0.18597 39.441 39.323 39.509 0.011456 10 8 2 0 0 0 8.7369 1 20939 20939 0 0 1 691370 17488 2728 12078 12289 20655 20655 0.0666303218563371 GVLRLFQL 8 Unmodified _GVLRLFQL_ 0 0 0 REV__nc|ENSG00000111906|Q7Z4H3-3|HDDC2 REV__nc|ENSG00000111906|Q7Z4H3-3|HDDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2956848144531 2 473.297645 944.580737 NaN NaN NaN NaN NaN NaN NaN 53.005 1 52.942 52.442 53.442 -0.063423 0 0 0 0.97444 1 28732 28732 2.8892 0 1 + 17489 18777 12079 12290 20656 20656 0.10622958410738192 GVLRPGNC 8 Unmodified _GVLRPGNC_ 0 0 0 REV__ENSG00000189350|ENST00000379558|TOGARAM2 REV__ENSG00000189350|ENST00000379558|TOGARAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2130432128906 2 408.213255 814.411957 0.52037 0.00021242 -1.8814 -0.00076801 -1.361 -0.00055559 408.2123838222256 50.659 0.25703 50.605 50.49 50.747 -0.053871 18 12 2 0 0 0 0.80676 1 27411 27411 2.5775 0 1 1994600 + 17490 23779 12080 12291 20657 20657 -0.002672664944157077 GVLSAFSPSL 10 Unmodified _GVLSAFSPSL_ 0 0 0 ENST00000206542.8_1_14:20922822-20922888:-|nuORF ENST00000206542.8_1_14:20922822-20922888:-|nuORF ENST00000206542.8_1_14:20922822-20922888:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2685241699219 2 489.26875 976.522947 0.93821 0.00045903 0.30452 0.00014899 1.2427 0.00060803 489.26888714612323 59.368 0.34172 53.253 53.11 53.452 -6.1147 31 18 2 0 0 0 0.2178 1 38118 38118 32.305 7.3145 1 21358000 17491 10992 12081 12292 20658 20658 0.03374651694673503 GVLSFYGLMK 10 Unmodified _GVLSFYGLMK_ 0 0 0 REV__nc|ENSG00000100129|Q9Y262-2|EIF3L REV__nc|ENSG00000100129|Q9Y262-2|EIF3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.803955078125 2 557.801903 1113.58925 NaN NaN NaN NaN NaN NaN NaN 85.542 1 85.604 85.104 86.104 0.061638 0 0 0 0.61917 1 47352 47352 20.454 6.5476 1 + 17492 18016 12082 12293 20659 20659 0.03700144265076233 GVLSSLLGSLG 11 Unmodified _GVLSSLLGSLG_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.79638671875 2 501.795132 1001.57571 -0.034413 -1.7268E-05 1.6498 0.00082784 1.6153 0.00081057 501.7959521467894 37.79 0.38004 37.807 37.691 38.071 0.01704 27 17 2 0 0 0 0.68427 1 20105 20105 5.7319 0 1 1772400 17493 10287 12083 12294 20660 20660 0.07498609757487884 GVLVYSQRSPD 11 Unmodified _GVLVYSQRSPD_ 0 0 0 REV__ENSG00000182798|ENST00000400004|MAGEB17 REV__ENSG00000182798|ENST00000400004|MAGEB17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8164672851562 2 610.817127 1219.6197 1.0951 0.00066891 -0.73568 -0.00044937 0.35942 0.00021954 610.8168488582819 20.697 0.50042 18.004 17.685 18.186 -2.693 53 30 2 0 0 0 0.71341 1 11010 11010 2.9952 0 1 2997800 + 17494 23296 12084 12295 20661 20661 0.018675941838182553 GVLYALSSF 9 Unmodified _GVLYALSSF_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 nc|ENSG00000253159|O60330-2|PCDHGA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5091552734375 1 956.50876 955.501483 0.58219 0.00055687 0.058082 5.5556E-05 0.64027 0.00061242 956.509891820823 82.008 0.23469 81.513 81.415 81.65 -0.4952 12 8 2 0 0 0 0.18465 1 44892 44892 24.674 0 1 362340 17495 10758 12085 12296 20662 20662 0.021952666659558417 GVLYGSIDR 9 Unmodified _GVLYGSIDR_ 0 0 0 REV__CON__Q2KJ83 REV__CON__Q2KJ83 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2649230957031 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 32.233 1 32.103 31.603 32.603 -0.12915 0 0 0 0.84737 1 16777 16777 1.8442 0.19162 1 + + 17496 16869 12086 12297 20663 20663 0.023328834091216777 GVLYLQDNWL 10 Unmodified _GVLYLQDNWL_ 0 0 0 REV__ENST00000392192.6_2_1:161069266-161070011:+|nuORF REV__ENST00000392192.6_2_1:161069266-161070011:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2001342773438 3 407.548518 1219.62372 NaN NaN NaN NaN NaN NaN NaN 24.454 1 24.454 23.954 24.954 0 0 0 0 0.98914 1 12498 12498 0.77653 0.078866 1 + 17497 21688 12087 12298 20664 20664 0.0226968367749123 GVLYSKQPKT 10 Unmodified _GVLYSKQPKT_ 0 0 0 REV__nc|ENSG00000134200|P01222-2|TSHB REV__nc|ENSG00000134200|P01222-2|TSHB MSMS AL20221201_MKP_PDAC_01 4 374.2187805175781 3 374.21688 1119.62881 NaN NaN NaN NaN NaN NaN NaN 18.648 1 16.026 15.526 16.526 -2.6215 0 0 0 0.97302 1 9836 9836 1.7423 0.52744 1 + 17498 19958 12088 12299 20665 20665 0.07377987540144204 GVMEKLQNG 9 Unmodified _GVMEKLQNG_ 0 0 0 nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2490844726562 2 488.250034 974.485516 NaN NaN NaN NaN NaN NaN NaN 17.793 1 17.793 17.293 18.293 0 0 0 0 0.84564 1 8797 8797 2.0598 0 1 17499 2219 12089 12300 20666 20666 -0.0027476284260501416 GVMESVIAL 9 Oxidation (M) _GVM(Oxidation (M))ESVIAL_ GVM(1)ESVIAL GVM(64)ESVIAL 0 0 1 nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000554481.1_1_15:91489865-91490237:+|nuORF nc|ENSG00000140553|Q9H3U1-2|UNC45A nc|ENSG00000140553|Q9H3U1-2|UNC45A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7497253417969 2 467.749336 933.484119 0.48598 0.00022732 -0.41743 -0.00019525 0.068555 3.2067E-05 467.7491471479787 63.449 0.57817 63.449 63.272 63.85 0 65 28 3 0 0 0 0.019979 2 35479 35377;35479 63.563 12.708 1 5594600 17500 5252 12090 12301 20667;20668 20668 966 0.014716030686372505 GVMFQATNTRD 11 Unmodified _GVMFQATNTRD_ 0 0 0 REV__ENSG00000112367|ENST00000230124|FIG4 REV__ENSG00000112367|ENST00000230124|FIG4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.218994140625 3 413.8644 1238.57137 -0.498 -0.0002061 -2.0857 -0.00086319 -2.5837 -0.0010693 413.86305909798597 20.566 0.14148 20.566 20.504 20.646 0 15 10 2 0 0 0 0.30565 1 10375 10375 0.50596 0 1 457520 + 17501 18815 12091 12302 20669 20669 -0.03837222727747758 GVMIVLADAFY 11 Unmodified _GVMIVLADAFY_ 0 0 0 ENSG00000256574|ENST00000553795|OR13A1 ENSG00000256574|ENST00000553795|OR13A1 ENSG00000256574|ENST00000553795|OR13A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2098388671875 3 400.210737 1197.61038 NaN NaN NaN NaN NaN NaN NaN 22.051 1 22.051 21.551 22.551 0 0 0 0 0.94144 1 11203 11203 0.50596 0.047615 1 17502 10802 12092 12303 20670 20670 0.01948109573891088 GVMKQEPFY 9 Unmodified _GVMKQEPFY_ 0 0 0 nc|ENSG00000172901|Q6Q4G3-4|LVRN;nc|ENSG00000172901|Q6Q4G3-3|LVRN;nc|ENSG00000172901|Q6Q4G3-2|LVRN;ENSG00000172901|ENST00000357872|LVRN nc|ENSG00000172901|Q6Q4G3-4|LVRN nc|ENSG00000172901|Q6Q4G3-4|LVRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2714233398438 2 549.76806 1097.52157 0.37766 0.00020763 3.3641 0.0018495 3.7418 0.0020571 550.2720782619357 62.134 0.43041 55.958 55.76 56.191 -6.1757 46 24 3 0 0 0 0.14602 1 40050 40050 28.487 0.85804 1 61591000 17503 8267 12093 12304 20671 20671 -0.023293056657394118 GVMKRDRSKL 10 Unmodified _GVMKRDRSKL_ 0 0 0 REV__ENST00000441380.1_1_6:29718586-29718787:-|nuORF REV__ENST00000441380.1_1_6:29718586-29718787:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2358703613281 3 397.232647 1188.67611 -0.015387 -6.1122E-06 0.012964 5.1496E-06 -0.0024233 -9.6261E-07 397.2328027427525 21.402 0.28939 21.415 21.233 21.523 0.013796 71 49 3 0 0 0 0.72196 1 10898 10898 0.15932 0 1 7057200 + 17504 27088 12094 12305 20672 20672 0.08931943539482745 GVMLCPGF 8 Unmodified _GVMLCPGF_ 0 0 0 ENST00000585553.5_1_17:43213778-43213988:+|nuORF ENST00000585553.5_1_17:43213778-43213988:+|nuORF ENST00000585553.5_1_17:43213778-43213988:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.1969909667969 2 412.195685 822.376817 NaN NaN NaN NaN NaN NaN NaN 15.731 1 13.203 12.703 13.703 -2.5273 0 0 0 0.97444 1 8097 8097 2.8892 0 1 17505 15609 12095 12306 20673 20673 -0.04147645346574791 GVMPPTQSFAP 11 Unmodified _GVMPPTQSFAP_ 0 0 0 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2805786132812 2 566.278792 1130.54303 NaN NaN NaN NaN NaN NaN NaN 18.561 1 18.567 18.067 19.067 0.0060463 0 0 0 0.94184 1 9411 9411 1.1933 0 1 17506 3212 12096 12307 20674 20674 -0.017019206370378015 GVMRPVDAD 9 Unmodified _GVMRPVDAD_ 0 0 0 ENST00000307533.10_1_4:6675831-6676296:+|nuORF ENST00000307533.10_1_4:6675831-6676296:+|nuORF ENST00000307533.10_1_4:6675831-6676296:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2344055175781 2 480.234384 958.454216 NaN NaN NaN NaN NaN NaN NaN 18.247 1 18.261 17.761 18.761 0.013865 0 0 0 0.84564 1 9135 9135 2.0598 1.2661 1 17507 11640 12097 12308 20675 20675 -0.02667335876708421 GVNDLLVP 8 Unmodified _GVNDLLVP_ 0 0 0 REV__ENSG00000146700|ENST00000275560|SSC4D REV__ENSG00000146700|ENST00000275560|SSC4D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.7383117675781 2 413.737086 825.459619 NaN NaN NaN NaN NaN NaN NaN 53.089 1 53.026 52.526 53.526 -0.063423 0 0 0 0.97444 1 28779 28779 0.79363 0 1 + 17508 20847 12098 12309 20676 20676 0.03990710977438994 GVNDSTAHLQD 11 Unmodified _GVNDSTAHLQD_ 0 0 0 MUC6|p.Q905Tfs*189|1|0.17|ENSG00000184956|chr11:1025891-1025892|-/T|frameshift_variant MUC6|p.Q905Tfs*189|1|0.17|ENSG00000184956|chr11:1025891-1025892|-/T|frameshift_variant MUC6|p.Q905Tfs*189|1|0.17|ENSG00000184956|chr11:1025891-1025892|-/T|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 386.0220642089844 3 386.179153 1155.51563 NaN NaN NaN NaN NaN NaN NaN 18.174 1 15.553 15.053 16.053 -2.6215 0 0 0 0.93933 1 9558 9558 1.2148 0.021489 1 17509 16000 12099 12310 20677 20677 -0.05590732643713636 GVNEPCYGYP 10 Unmodified _GVNEPCYGYP_ 0 0 0 REV__ENST00000493967.1_1_1:62330125-62331056:+|nuORF REV__ENST00000493967.1_1_1:62330125-62331056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.21728515625 2 549.731674 1097.4488 -0.25298 -0.00013907 2.0145 0.0011074 1.7615 0.00096835 549.7334681744211 18.123 0.27446 18.123 17.971 18.245 0 90 36 4 0 0 0 0.72044 1 9047 9047 1.4819 0.8804 1 2965600 + 17510 27931 12100 12311 20678 20678 -0.09603059459186625 GVNFEYQLCN 10 Unmodified _GVNFEYQLCN_ 0 0 0 ENSG00000156140|ENST00000286657|ADAMTS3 ENSG00000156140|ENST00000286657|ADAMTS3 ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1781616210938 3 396.178096 1185.51246 -0.36328 -0.00014393 0.053033 2.101E-05 -0.31025 -0.00012291 396.17812750900595 23.506 0.33583 23.506 23.287 23.623 0 39 16 3 0 0 0 0.70951 1 11949 11949 0.77653 0 1 1700100 17511 6433 12101 12312 20679 20679 -0.0728769902204931 GVNFLLSHTF 10 Unmodified _GVNFLLSHTF_ 0 0 0 REV__ENST00000591464.5_1_18:76838018-76856519:+|nuORF REV__ENST00000591464.5_1_18:76838018-76856519:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8016357421875 2 567.800749 1133.58694 NaN NaN NaN NaN NaN NaN NaN 31.882 1 31.753 31.253 32.253 -0.12915 0 0 0 0.98692 1 16588 16588 1.8442 0 1 + 17512 29162 12102 12313 20680 20680 0.025494318515939085 GVNMANSI 8 Unmodified _GVNMANSI_ 0 0 0 ENSG00000167157|ENST00000372469|PRRX2 ENSG00000167157|ENST00000372469|PRRX2 ENSG00000167157|ENST00000372469|PRRX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.1962585449219 2 403.19727 804.379988 NaN NaN NaN NaN NaN NaN NaN 19.854 1 19.862 19.362 20.362 0.0078487 0 0 0 0.97444 1 10110 10110 2.8892 0 1 17513 7580 12103 12314 20681 20681 -0.03002678968221062 GVNQFTSVFC 10 Unmodified _GVNQFTSVFC_ 0 0 0 ENSG00000162009|ENST00000689027|SSTR5 ENSG00000162009|ENST00000689027|SSTR5 ENSG00000162009|ENST00000689027|SSTR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8391418457031 3 367.839303 1100.49608 NaN NaN NaN NaN NaN NaN NaN 14.577 1 14.577 14.077 15.077 0 0 0 0 0.98914 1 6940 6940 0.77653 0.078866 1 17514 6828 12104 12315 20682 20682 -0.05014780188162149 GVNRAYPYSQT 11 Unmodified _GVNRAYPYSQT_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MSMS AL20221201_MKP_PDAC_01 4 419.2084655761719 3 419.207043 1254.5993 NaN NaN NaN NaN NaN NaN NaN 96.036 1 89.861 89.361 90.361 -6.1757 0 0 0 0.85601 1 63628 63628 4.7159 0 1 17515 3164 12105 12316 20683 20683 -0.017815764760371167 GVNRFYDNI 9 Unmodified _GVNRFYDNI_ 0 0 0 ENSG00000157103|ENST00000287766|SLC6A1 ENSG00000157103|ENST00000287766|SLC6A1 ENSG00000157103|ENST00000287766|SLC6A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5169677734375 3 366.517329 1096.53016 NaN NaN NaN NaN NaN NaN NaN 25.042 1 25.042 24.542 25.542 0 0 0 0 0.84369 1 12824 12824 1.1933 0 1 17516 6499 12106 12317 20684 20684 -0.014246157049228714 GVNSNQSTMQF 11 Unmodified _GVNSNQSTMQF_ 0 0 0 REV__nc|ENSG00000107938|Q3B7T1-5|EDRF1 REV__nc|ENSG00000107938|Q3B7T1-5|EDRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8494262695312 3 404.848638 1211.52409 1.3214 0.00053497 0.10236 4.1442E-05 1.4238 0.00057641 404.84868136278146 21.421 0.33974 18.686 18.595 18.935 -2.7348 73 31 3 0 0 0 0.71341 1 11486 11486 2.6312 1.5215 1 11717000 + 17517 18586 12107 12318 20685 20685 -0.0732150199876287 GVNTGSYF 8 Unmodified _GVNTGSYF_ 0 0 0 REV__ENST00000252818.4_1_19:18390759-18390948:-|nuORF REV__ENST00000252818.4_1_19:18390759-18390948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.6963195800781 2 422.695418 843.376283 NaN NaN NaN NaN NaN NaN NaN 15.481 1 15.481 14.981 15.981 0 0 0 0 0.97444 1 7460 7460 2.8892 2.0956 1 + 17518 24893 12108 12319 20686 20686 -0.051670254704276886 GVNTIHPSI 9 Unmodified _GVNTIHPSI_ 0 0 0 REV__ENSG00000141437|ENST00000269205|SLC25A52 REV__ENSG00000141437|ENST00000269205|SLC25A52 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2594909667969 2 469.258717 936.50288 NaN NaN NaN NaN NaN NaN NaN 31.443 1 31.34 30.84 31.84 -0.10269 0 0 0 0.39043 1 16346 16346 20.454 1.1966 1 + 17519 20534 12109 12320 20687 20687 0.0320890075471425 GVNVACVFLKI 11 Unmodified _GVNVACVFLKI_ 0 0 0 ENST00000394996.2_1_10:120692379-120692769:-|nuORF ENST00000394996.2_1_10:120692379-120692769:-|nuORF ENST00000394996.2_1_10:120692379-120692769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2265625 3 388.22661 1161.658 -0.087302 -3.3893E-05 0.87192 0.0003385 0.78462 0.00030461 388.22697460635857 32.313 0.19726 32.184 32.069 32.266 -0.12915 10 7 2 0 0 0 0.71036 1 16806 16806 1.3296 0.11481 1 1007200 17520 12753 12110 12321 20688 20688 0.08363808564763531 GVPAQMHF 8 Unmodified _GVPAQMHF_ 0 0 0 ENST00000568983.5_1_16:89811164-89816202:-|nuORF ENST00000568983.5_1_16:89811164-89816202:-|nuORF ENST00000568983.5_1_16:89811164-89816202:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7152404785156 2 443.71563 885.416708 0.33343 0.00014795 -1.1246 -0.00049902 -0.79121 -0.00035107 443.71516966209435 29.571 0.74477 29.601 29.488 30.233 0.030106 55 31 4 0 0 0 0.71616 1 15373 15373 15.768 1.1865 1 98999000 17521 15454 12111 12322 20689 20689 -0.03058382351639466 GVPARVMR 8 Unmodified _GVPARVMR_ 0 0 0 REV__ENSG00000175287|ENST00000372592|PHYHD1 REV__ENSG00000175287|ENST00000372592|PHYHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2595825195312 2 443.257997 884.501441 0.12974 5.7508E-05 2.4239 0.0010744 2.5537 0.0011319 443.2588478111117 98.848 0.12616 92.672 92.626 92.752 -6.1757 15 9 2 0 0 0 0.80143 1 65657 65657 5.7604 0.52976 1 42988000 + 17522 22860 12112 12323 20690 20690 0.054569881849715784 GVPAVFMR 8 Unmodified _GVPAVFMR_ 0 0 0 ENST00000329517.10_1_22:19776048-19776162:-|nuORF ENST00000329517.10_1_22:19776048-19776162:-|nuORF ENST00000329517.10_1_22:19776048-19776162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7418518066406 2 438.741648 875.468743 NaN NaN NaN NaN NaN NaN NaN 21.61 1 21.638 21.138 22.138 0.028357 0 0 0 0.97444 1 10972 10972 0.79363 0 1 17523 11846 12113 12324 20691 20691 0.026027810621144454 GVPCDCRQP 9 Unmodified _GVPCDCRQP_ 0 0 0 REV__ENST00000358337.9_1_5:140051193-140051367:+|nuORF REV__ENST00000358337.9_1_5:140051193-140051367:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7119750976562 2 487.712762 973.410971 NaN NaN NaN NaN NaN NaN NaN 17.525 1 17.53 17.03 18.03 0.0050564 0 0 0 0.84737 1 8843 8843 1.8442 0 1 + 17524 25873 12114 12325 20692 20692 -0.0767984892562481 GVPDPPGL 8 Unmodified _GVPDPPGL_ 0 0 0 ENSG00000095370|ENST00000314830|SH2D3C ENSG00000095370|ENST00000314830|SH2D3C ENSG00000095370|ENST00000314830|SH2D3C MSMS AL20221201_MKP_PDAC_01 4 376.2015686035156 2 376.202879 750.391205 NaN NaN NaN NaN NaN NaN NaN 23.682 1 20.855 20.355 21.355 -2.8273 0 0 0 0.95201 1 12830 12830 10.183 4.423 1 17525 1650 12115 12326 20693 20693 0.00602466397583612 GVPDVRWLILE 11 Unmodified _GVPDVRWLILE_ 0 0 0 REV__ENSG00000172869|ENST00000539542|DMXL1 REV__ENSG00000172869|ENST00000539542|DMXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9153137207031 3 432.915201 1295.72377 0.66227 0.00028671 0.032222 1.395E-05 0.69449 0.00030066 432.91527161386745 26.757 0.30329 23.721 23.57 23.873 -3.0365 40 15 4 0 0 0 0.66568 1 14742 14742 7.4771 0.43998 1 15299000 + 17526 22681 12116 12327 20694 20694 0.08773921011334096 GVPDWHTSPL 10 Unmodified _GVPDWHTSPL_ 0 0 0 REV__ENST00000552197.5_1_12:46661279-46661483:-|nuORF REV__ENST00000552197.5_1_12:46661279-46661483:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 370.2210083007812 3 370.185579 1107.53491 NaN NaN NaN NaN NaN NaN NaN 16.226 1 13.669 13.169 14.169 -2.557 0 0 0 0.96981 1 8390 8390 1.9064 0 1 + 17527 28724 12117 12328 20695 20695 -0.014557315621232192 GVPDYCKMVF 10 Unmodified _GVPDYCKMVF_ 0 0 0 REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1 REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8498229980469 3 386.848922 1157.52494 NaN NaN NaN NaN NaN NaN NaN 19.515 1 19.515 19.015 20.015 0 0 0 0 0.98914 1 9763 9763 0.77653 0 1 + 17528 22417 12118 12329 20696 20696 -0.047523788834041625 GVPFFSRPGAF 11 Unmodified _GVPFFSRPGAF_ 0 0 0 REV__ENST00000469518.1_1_7:72990936-72991053:-|nuORF REV__ENST00000469518.1_1_7:72990936-72991053:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5431213378906 3 394.541586 1180.60293 NaN NaN NaN NaN NaN NaN NaN 16.445 1 16.45 15.95 16.95 0.0050564 0 0 0 0.94144 1 8246 8246 0.50596 0 1 + 17529 27467 12119 12330 20697 20697 0.01985138088525673 GVPFHCGA 8 Unmodified _GVPFHCGA_ 0 0 0 REV__ENST00000573346.5_1_17:78175550-78177620:-|nuORF REV__ENST00000573346.5_1_17:78175550-78177620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1812744140625 2 394.181423 786.348294 -0.47854 -0.00018863 0.08044 3.1708E-05 -0.3981 -0.00015692 394.18158890989287 19.377 0.27718 19.4 19.305 19.582 0.023106 67 28 4 0 0 0 0.80975 1 9837 9837 0.79363 0 1 4874200 + 17530 28995 12120 12331 20698 20698 -0.05342626931508221 GVPFHCGA 8 Unmodified _GVPFHCGA_ 0 0 0 REV__ENST00000573346.5_1_17:78175550-78177620:-|nuORF REV__ENST00000573346.5_1_17:78175550-78177620:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1829223632812 2 394.181423 786.348294 NaN NaN NaN NaN NaN NaN NaN 20.072 1 20.1 19.6 20.6 0.028357 0 0 0 0.97444 1 10149 10149 0.79363 0 1 + 17531 28995 12120 12331 20699 20699 -0.05342626931508221 GVPFKQIA 8 Unmodified _GVPFKQIA_ 0 0 0 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 REV__nc|ENSG00000178297|Q7Z410|TMPRSS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.5042724609375 1 859.503615 858.496338 1.3985 0.001202 0.090207 7.7533E-05 1.4887 0.0012795 859.5032245079307 104.53 0.060287 98.358 98.338 98.398 -6.1757 5 3 2 0 0 0 0.80975 1 70006 70006 0.79363 0 1 4627500 + 17532 23034 12121 12332 20700 20700 0.06143007593993843 GVPFPDAV 8 Unmodified _GVPFPDAV_ 0 0 0 ENST00000557552.1_1_14:105238371-105239528:-|nuORF ENST00000557552.1_1_14:105238371-105239528:-|nuORF ENST00000557552.1_1_14:105238371-105239528:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2097473144531 2 401.210704 800.406855 0.024434 9.8033E-06 -3.6624 -0.0014694 -3.6379 -0.0014596 401.2096495992907 103.27 0.059059 103.27 103.24 103.3 0 4 2 2 0 0 0 0.80975 1 56943 56943 0.79363 0 1 854200 17533 15259 12122 12333 20701 20701 -0.0013324708538675623 GVPGELRGY 9 Unmodified _GVPGELRGY_ 0 0 0 nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5 nc|ENSG00000099998|P36269-2|GGT5 nc|ENSG00000099998|P36269-2|GGT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2291870117188 2 474.250892 946.48723 NaN NaN NaN NaN NaN NaN NaN 26.449 1 26.449 25.949 26.949 0 0 0 0 0.82015 1 13597 13597 5.2307 0.47466 1 17534 1735 12123 12334 20702 20702 0.011846142376725766 GVPGLNIEELI 11 Unmodified _GVPGLNIEELI_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MSMS AL20221201_MKP_PDAC_01 4 385.2221984863281 3 385.22029 1152.63904 NaN NaN NaN NaN NaN NaN NaN 90.884 1 84.708 84.208 85.208 -6.1757 0 0 0 0.84159 1 60059 60059 5.0475 0.3316 1 17535 7005 12124 12335 20703 20703 0.06882550474733762 GVPGPGDY 8 Unmodified _GVPGPGDY_ 0 0 0 REV__ENST00000523256.6_2_8:104427097-104427358:-|nuORF REV__ENST00000523256.6_2_8:104427097-104427358:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.8740234375 2 381.176861 760.339169 NaN NaN NaN NaN NaN NaN NaN 15.538 1 13.011 12.511 13.511 -2.5273 0 0 0 0.9706 1 7981 7981 6.3541 3.4649 1 + 17536 28311 12125 12336 20704 20704 -0.05058697016193037 GVPGPHTY 8 Unmodified _GVPGPHTY_ 0 0 0 REV__ENSG00000116128|ENST00000234739|BCL9 REV__ENSG00000116128|ENST00000234739|BCL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2066955566406 2 414.205953 826.397353 NaN NaN NaN NaN NaN NaN NaN 23.924 1 23.924 23.424 24.424 0 0 0 0 0.97444 1 12209 12209 2.8892 0 1 + 17537 19027 12126 12337 20705 20705 -0.022790153709024707 GVPGPMMQ 8 Unmodified _GVPGPMMQ_ 0 0 0 REV__ENSG00000163348|ENST00000368457|PYGO2 REV__ENSG00000163348|ENST00000368457|PYGO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.6910095214844 2 408.690767 815.36698 NaN NaN NaN NaN NaN NaN NaN 14.324 1 14.324 13.824 14.824 0 0 0 0 0.97444 1 6801 6801 0.79363 0 1 + 17538 21750 12127 12338 20706 20706 -0.048088333519558546 GVPGYCAP 8 Unmodified _GVPGYCAP_ 0 0 0 REV__ENST00000502669.5_1_4:8201071-8206907:+|nuORF REV__ENST00000502669.5_1_4:8201071-8206907:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1628723144531 2 382.175807 762.337061 NaN NaN NaN NaN NaN NaN NaN 14.597 1 14.597 14.097 15.097 0 0 0 0 0.97444 1 6952 6952 0.79363 0 1 + 17539 28026 12128 12339 20707 20707 -0.05361449025656384 GVPHFTTQYND 11 Unmodified _GVPHFTTQYND_ 0 0 0 REV__HADH-ZP2|1|fusion REV__HADH-ZP2|1|fusion MSMS AL20221201_MKP_PDAC_01 4 639.7911376953125 2 639.791109 1277.56767 NaN NaN NaN NaN NaN NaN NaN 23.17 1 20.391 19.891 20.891 -2.7784 0 0 0 0.93893 1 12521 12521 3.2813 1.4371 1 + 17540 18298 12129 12340 20708 20708 -0.06001569229943016 GVPHTAAFR 9 Unmodified _GVPHTAAFR_ 0 0 0 ENST00000477990.1_1_1:1552438-1552603:+|nuORF;ENST00000463492.1_1_1:1551370-1552603:+|nuORF ENST00000477990.1_1_1:1552438-1552603:+|nuORF ENST00000477990.1_1_1:1552438-1552603:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2581176757812 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 18.374 1 18.38 17.88 18.88 0.0060463 0 0 0 0.84564 1 9310 9310 2.0598 1.2661 1 17541 13696 12130 12341 20709 20709 0.02447740194418202 GVPLLLHP 8 Unmodified _GVPLLLHP_ 0 0 0 REV__ENST00000378536.4_1_1:2240916-2241354:+|nuORF REV__ENST00000378536.4_1_1:2240916-2241354:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.523681640625 1 845.52435 844.517074 -0.37724 -0.00031897 -0.44013 -0.00037214 -0.81737 -0.00069111 845.5236132860649 106.13 0.24529 106.09 105.96 106.21 -0.048103 16 8 2 0 0 0 0.80975 1 58819 58819 0.79363 0 1 3063700 + 17542 26269 12131 12342 20710 20710 0.08859597973651034 GVPLRSSPV 9 Unmodified _GVPLRSSPV_ 0 0 0 ENST00000330651.10_1_22:50702812-50703121:-|nuORF ENST00000330651.10_1_22:50702812-50703121:-|nuORF ENST00000330651.10_1_22:50702812-50703121:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2697448730469 2 456.269084 910.523616 0.0247 1.127E-05 0.54649 0.00024935 0.57119 0.00026062 456.2693619015004 31.845 0.21921 31.845 31.681 31.9 0 16 10 2 0 0 0 0.34999 1 16579 16579 14.838 0.93222 1 1040800 17543 11851 12132 12343 20711 20711 0.06477491134376123 GVPLRSSPV 9 Unmodified _GVPLRSSPV_ 0 0 0 ENST00000330651.10_1_22:50702812-50703121:-|nuORF ENST00000330651.10_1_22:50702812-50703121:-|nuORF ENST00000330651.10_1_22:50702812-50703121:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2702331542969 2 456.269084 910.523616 1.3041 0.00059504 -0.063726 -2.9076E-05 1.2404 0.00056596 456.2693344043303 36.053 0.33227 31.86 31.664 31.996 -4.1928 47 20 3 0 0 0 0.23158 1 21070 21070 20.454 1.1966 1 7935000 17544 11851 12132 12343 20712 20712 0.06477491134376123 GVPMCIMV 8 Unmodified _GVPMCIMV_ 0 0 0 REV__PHACTR1|p.P254Q|1|0.19|ENSG00000112137|chr6:13205911-13205911|C/A|missense_variant REV__PHACTR1|p.P254Q|1|0.19|ENSG00000112137|chr6:13205911-13205911|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 425.2052917480469 2 425.205195 848.395838 NaN NaN NaN NaN NaN NaN NaN 10.166 1 7.6842 7.1842 8.1842 -2.482 0 0 0 0.97444 1 5126 5126 0.79363 0 1 + 17545 18786 12133 12344 20713 20713 -0.03442432047177135 GVPMCIMV 8 Unmodified _GVPMCIMV_ 0 0 0 REV__PHACTR1|p.P254Q|1|0.19|ENSG00000112137|chr6:13205911-13205911|C/A|missense_variant REV__PHACTR1|p.P254Q|1|0.19|ENSG00000112137|chr6:13205911-13205911|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 425.2052001953125 2 425.205195 848.395838 NaN NaN NaN NaN NaN NaN NaN 10.394 1 7.9115 7.4115 8.4115 -2.482 0 0 0 0.97444 1 5241 5241 0.79363 0 1 + 17546 18786 12133 12344 20714 20714 -0.03442432047177135 GVPMPDTFSY 10 Unmodified _GVPMPDTFSY_ 0 0 0 ENSG00000177181|ENST00000431473|RIMKLA ENSG00000177181|ENST00000431473|RIMKLA ENSG00000177181|ENST00000431473|RIMKLA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2491455078125 2 557.2497 1112.48485 NaN NaN NaN NaN NaN NaN NaN 26.961 1 26.961 26.461 27.461 0 0 0 0 0.96981 1 13877 13877 3.9444 0 1 17547 8663 12134 12345 20715 20715 -0.0668960228231299 GVPMPNKV 8 Unmodified _GVPMPNKV_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7530822753906 2 421.233656 840.452759 0.32851 0.00013838 1.7904 0.00075417 2.1189 0.00089255 421.2343430194643 63.33 0.25913 62.844 62.689 62.948 -0.48617 18 11 2 0 0 0 8.7369 1 34550 34550 11.114 0 1 391020 + 17548 145 12135 12346 20716 20716 0.02615074825200736 GVPMRQAA 8 Unmodified _GVPMRQAA_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22 nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2197570800781 2 415.22108 828.427607 NaN NaN NaN NaN NaN NaN NaN 54.527 1 54.46 53.96 54.96 -0.066936 0 0 0 0.97348 1 29613 29613 5.7604 1.0044 1 17549 456 12136 12347 20717 20717 0.006530200226279703 GVPPGPKEL 9 Unmodified _GVPPGPKEL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.2584228515625 2 447.258185 892.501818 0.86215 0.0003856 0.28539 0.00012764 1.1475 0.00051325 447.2583376671486 39.558 0.52925 35.107 34.84 35.37 -4.4509 39 32 2 0 0 0 0.12841 1 23535 23535 30.225 6.2042 1 7563700 + 17550 21279 12137 12348 20718 20718 0.05126686385801804 GVPPGTWAFCL 11 Unmodified _GVPPGTWAFCL_ 0 0 0 ENST00000323329.3_1_18:43217087-43224130:+|nuORF;ENSG00000132874|ENST00000255226|SLC14A2 ENST00000323329.3_1_18:43217087-43224130:+|nuORF ENST00000323329.3_1_18:43217087-43224130:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.8594055175781 3 383.191677 1146.5532 NaN NaN NaN NaN NaN NaN NaN 12.677 1 10.195 9.6949 10.695 -2.482 0 0 0 0.94144 1 6418 6418 0.50596 0 1 17551 4459 12138 12349 20719 20719 -0.014213129117706558 GVPPPFPPIQ 10 Unmodified _GVPPPFPPIQ_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000466998.1_1_1:32042169-32043067:+|nuORF;ENST00000481165.5_1_1:32042638-32048843:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1994018554688 3 350.199049 1047.57532 -0.039316 -1.3768E-05 0.80964 0.00028353 0.77032 0.00026977 350.1992823164649 38.793 0.20985 38.506 38.398 38.608 -0.28687 23 9 3 0 0 0 0.70951 1 20443 20443 0.77653 0.27058 1 2655400 17552 5451 12139 12350 20720 20720 0.05343234828274035 GVPPQAPSLI 10 Unmodified _GVPPQAPSLI_ 0 0 0 REV__ENST00000486149.2_1_6:30954274-30955276:+|nuORF REV__ENST00000486149.2_1_6:30954274-30955276:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.25244140625 2 489.784567 977.554582 0.68229 0.00033418 -0.48622 -0.00023814 0.19607 9.6033E-05 489.7844117721639 64.695 0.40945 64.21 63.993 64.403 -0.48512 30 18 2 0 0 0 0.22993 1 35275 35275 7.9102 0 1 883560 + 17553 27795 12140 12351 20721 20721 0.06490644448604144 GVPQILNYL 9 Unmodified _GVPQILNYL_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7920227050781 2 508.792392 1015.57023 -0.13374 -6.8047E-05 0.66402 0.00033785 0.53028 0.0002698 508.79278485731606 69.097 0.68338 68.616 68.264 68.948 -0.48071 68 29 3 0 0 0 0.078417 1 37681 37681 38.151 2.107 1 15271000 + 17554 23140 12141 12352 20722 20722 0.06306930965661195 GVPQILNYL 9 Unmodified _GVPQILNYL_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7928161621094 2 508.792392 1015.57023 0.80393 0.00040903 1.4554 0.00074048 2.2593 0.0011495 508.79308361837496 68.586 0.31422 68.611 68.479 68.793 0.025146 36 14 3 0 0 0 0.078417 2 37695 37630;37695 38.151 2.107 1 5131700 + 17555 23140 12141 12352 20723;20724 20724 0.06306930965661195 GVPQILNYL 9 Unmodified _GVPQILNYL_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7929382324219 2 508.792392 1015.57023 0.66882 0.00034029 0.31769 0.00016164 0.9865 0.00050193 508.79262247014503 75.528 0.81022 69.352 68.906 69.717 -6.1757 129 43 4 0 0 0 0.078417 1 49563 49563 38.151 2.107 1 113490000 + 17556 23140 12141 12352 20725 20725 0.06306930965661195 GVPQILNYL 9 Unmodified _GVPQILNYL_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.792392 1015.57023 0.80393 0.00040903 1.4554 0.00074048 2.2593 0.0011495 508.79308361837496 68.586 0.31422 68.611 68.479 68.793 0.025146 -2.4101E-05 0.00065548 NaN 38.151 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5131700 + 17557 23140 12141 12352 0.06306930965661195 GVPQKSTLK 9 Unmodified _GVPQKSTLK_ 0 0 0 REV__ENSG00000157110|ENST00000397323|RBPMS REV__ENSG00000157110|ENST00000397323|RBPMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2908630371094 2 479.290017 956.565481 -0.4437 -0.00021266 1.5681 0.00075156 1.1244 0.0005389 479.2906583936462 18.589 0.13381 18.612 18.535 18.668 0.023106 29 19 3 0 0 0 0.59218 1 9320 9320 1.8442 0 1 717900 + 17558 21364 12142 12353 20726 20726 0.08546046822903008 GVPQLKHPKF 10 Unmodified _GVPQLKHPKF_ 0 0 0 REV__ENST00000497921.2_3_3:42861167-42906029:+|nuORF REV__ENST00000497921.2_3_3:42861167-42906029:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.2264709472656 3 384.229231 1149.66586 -0.58318 -0.00022408 -3.165 -0.0012161 -3.7482 -0.0014402 384.22793694100943 17.616 0.059292 17.616 17.574 17.633 0 10 8 2 0 0 0 0.7191 1 8688 8688 0.77653 0.078866 1 366370 + 17559 27985 12143 12354 20727 20727 0.09701703876544343 GVPQLKHPKF 10 Unmodified _GVPQLKHPKF_ 0 0 0 REV__ENST00000497921.2_3_3:42861167-42906029:+|nuORF REV__ENST00000497921.2_3_3:42861167-42906029:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.229231 1149.66586 -0.58318 -0.00022408 -3.165 -0.0012161 -3.7482 -0.0014402 384.22793694100943 17.616 0.059292 17.616 17.574 17.633 0 0 0 NaN 0.77653 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 366370 + 17560 27985 12143 12354 0.09701703876544343 GVPQNTGMK 9 Unmodified _GVPQNTGMK_ 0 0 0 nc|ENSG00000174720|Q4G0J3-2|LARP7;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7 nc|ENSG00000174720|Q4G0J3-2|LARP7 nc|ENSG00000174720|Q4G0J3-2|LARP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2364807128906 2 466.236927 930.459301 1.281 0.00059727 -3.3277 -0.0015515 -2.0466 -0.00095422 466.2355362951865 50.316 0.18307 50.267 50.21 50.393 -0.048824 11 8 2 0 0 0 0.5029 1 27229 27229 7.2892 2.0586 1 993770 17561 8451 12144 12355 20728 20728 -0.008710320140721706 GVPRAPKW 8 Unmodified _GVPRAPKW_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7672119140625 2 455.766512 909.518471 0.58884 0.00026837 0.67622 0.0003082 1.2651 0.00057657 455.7668166861482 73.722 0.31989 73.247 73.092 73.412 -0.47588 16 14 2 0 0 0 0.80975 1 40340 40340 0.79363 0.19213 1 1869100 + 17562 23892 12145 12356 20729 20729 0.06009232062410774 GVPRGGGGV 9 Unmodified _GVPRGGGGV_ 0 0 0 REV__ENSG00000158158|ENST00000377075|CNNM4 REV__ENSG00000158158|ENST00000377075|CNNM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2121276855469 2 378.211569 754.408586 NaN NaN NaN NaN NaN NaN NaN 21.502 1 21.502 21.002 22.002 0 0 0 0 0.84369 1 10884 10884 2.3027 0 1 + 17563 21420 12146 12357 20730 20730 0.021558067232376743 GVPRLRQLK 9 Unmodified _GVPRLRQLK_ 0 0 0 nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1;nc|ENSG00000107593|Q9P0L9-4|PKD2L1;nc|ENSG00000107593|Q9P0L9-3|PKD2L1 nc|ENSG00000107593|Q9P0L9-2|PKD2L1 nc|ENSG00000107593|Q9P0L9-2|PKD2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8457641601562 2 533.845825 1065.6771 0.23244 0.00012409 -0.48476 -0.00025879 -0.25232 -0.0001347 533.8455872670401 26.27 0.19479 23.319 23.244 23.439 -2.9511 14 10 2 0 0 0 0.55144 1 14473 14473 4.3292 0 1 4561500 17564 2504 12147 12358 20731 20731 0.14688525970677802 GVPRPLAMK 9 Unmodified _GVPRPLAMK_ 0 0 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7884521484375 2 484.78913 967.563706 -0.04705 -2.2809E-05 -0.8078 -0.00039161 -0.85485 -0.00041442 484.7886606897628 37.077 0.42473 37.099 36.816 37.24 0.021545 53 19 4 0 0 0 0.58865 1 19730 19730 2.0598 2.0598 1 37525000 17565 5333 12148 12359 20732 20732 0.07862714533280268 GVPRSVRTF 9 Unmodified _GVPRSVRTF_ 0 0 0 nc|ENSG00000204991|Q8WWL2-4|SPIRE2;nc|ENSG00000204991|Q8WWL2-3|SPIRE2;nc|ENSG00000204991|Q8WWL2-2|SPIRE2;ENST00000569108.5_1_16:89916567-89936677:+|nuORF;ENSG00000204991|ENST00000378247|SPIRE2 nc|ENSG00000204991|Q8WWL2-4|SPIRE2 nc|ENSG00000204991|Q8WWL2-4|SPIRE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8002624511719 2 509.793258 1017.57196 0.3211 0.0001637 1.5588 0.00079466 1.8799 0.00095835 509.7934475121649 29.121 0.28976 29.151 29.009 29.299 0.030106 32 11 4 0 0 0 0.51218 1 15149 15149 6.7232 0.96273 1 8158400 17566 10342 12149 12360 20733 20733 0.06387984774278266 GVPRWRVW 8 Unmodified _GVPRWRVW_ 0 0 0 ENST00000359060.5_1_1:1498357-1498459:-|nuORF ENST00000359060.5_1_1:1498357-1498459:-|nuORF ENST00000359060.5_1_1:1498357-1498459:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.30078125 2 528.29851 1054.58247 NaN NaN NaN NaN NaN NaN NaN 14.165 1 14.172 13.672 14.672 0.0073986 0 0 0 0.97444 1 7012 7012 0.79363 0.19213 1 17567 12139 12150 12361 20734 20734 0.05736012219381337 GVPSCLWPQT 10 Unmodified _GVPSCLWPQT_ 0 0 0 REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF REV__ENST00000413037.1_1_2:24305820-24305973:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.1802673339844 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 75.295 1 69.12 68.62 69.62 -6.1757 0 0 0 0.97302 1 49243 49243 1.7423 0.14999 1 + 17568 26730 12151 12362 20735 20735 -0.022981898085163266 GVPSTMDL 8 Unmodified _GVPSTMDL_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MSMS AL20221201_MKP_PDAC_01 4 410.2018737792969 2 410.199479 818.384405 NaN NaN NaN NaN NaN NaN NaN 21.241 1 18.548 18.048 19.048 -2.693 0 0 0 0.97348 1 11351 11351 5.7604 2.8712 1 17569 2506 12152 12363 20736 20736 -0.032052145453235426 GVPTIRSDI 9 Unmodified _GVPTIRSDI_ 0 0 0 nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB nc|ENSG00000163576|Q8N7U6-3|EFHB nc|ENSG00000163576|Q8N7U6-3|EFHB MSMS AL20221201_MKP_PDAC_01 4 479.2715454101562 2 479.271824 956.529095 NaN NaN NaN NaN NaN NaN NaN 26.407 1 23.456 22.956 23.956 -2.9511 0 0 0 0.36554 1 14553 14553 21.747 3.6117 1 17570 7021 12153 12364 20737 20737 0.04909169926179402 GVPTYGAIIL 10 Unmodified _GVPTYGAIIL_ 0 0 0 nc|ENSG00000172795|Q8IU60-2|DCP2;ENSG00000172795|ENST00000389063|DCP2 nc|ENSG00000172795|Q8IU60-2|DCP2 nc|ENSG00000172795|Q8IU60-2|DCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2956237792969 2 502.294768 1002.57498 0.68591 0.00034453 -0.44728 -0.00022467 0.23863 0.00011986 502.29452769497965 60.881 0.351 60.881 60.718 61.069 0 38 14 3 0 0 0 0.092434 1 33927 33927 48.346 6.2513 1 6313600 17571 8256 12154 12365 20738 20738 0.07379815108436105 GVPVDALFFI 10 Unmodified _GVPVDALFFI_ 0 0 0 nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3 nc|ENSG00000136636|Q9Y597-2|KCTD3 nc|ENSG00000136636|Q9Y597-2|KCTD3 MSMS AL20221201_MKP_PDAC_01 4 359.8718872070312 3 359.870821 1076.59063 NaN NaN NaN NaN NaN NaN NaN 25.304 1 22.421 21.921 22.921 -2.8831 0 0 0 0.90096 1 13846 13846 4.1895 0 1 17572 4840 12155 12366 20739 20739 0.0554010162547911 GVPVLHLISTP 11 Unmodified _GVPVLHLISTP_ 0 0 0 nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL nc|ENSG00000011478|Q9NXS2-3|QPCTL nc|ENSG00000011478|Q9NXS2-3|QPCTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.228515625 3 378.229008 1131.66519 -0.36071 -0.00013643 0.27936 0.00010566 -0.081355 -3.0771E-05 378.2289911353257 20.531 0.16653 20.559 20.455 20.622 0.028357 16 8 2 0 0 0 0.73992 1 10370 10370 0.50596 0.047615 1 867940 17573 450 12156 12367 20740 20740 0.10462864436840391 GVPVPGYFRL 10 Unmodified _GVPVPGYFRL_ 0 0 0 ENSG00000253293|ENST00000283921|HOXA10 ENSG00000253293|ENST00000283921|HOXA10 ENSG00000253293|ENST00000283921|HOXA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8120727539062 2 552.813659 1103.61277 NaN NaN NaN NaN NaN NaN NaN 36.787 1 36.538 36.038 37.038 -0.2497 0 0 0 0.8634 1 19315 19315 6.7232 1.4925 1 17574 10761 12157 12368 20741 20741 0.06510326093894037 GVPVPPAP 8 Unmodified _GVPVPPAP_ 0 0 0 REV__ENSG00000183734|ENST00000331289|ASCL2 REV__ENSG00000183734|ENST00000331289|ASCL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2154235839844 2 367.215789 732.417025 NaN NaN NaN NaN NaN NaN NaN 28.488 1 28.426 27.926 28.926 -0.062159 0 0 0 0.97444 1 14708 14708 2.8892 0 1 + 17575 23371 12158 12369 20742 20742 0.04011360639844952 GVQAVIFFLY 10 Unmodified _GVQAVIFFLY_ 0 0 0 ENST00000506649.5_1_6:109690056-109702985:-|nuORF;ENST00000499860.6_1_6:109690056-109700950:-|nuORF;nc|ENSG00000135535|Q04900-4|CD164;nc|ENSG00000135535|Q04900-3|CD164;ENSG00000135535|ENST00000310786|CD164 ENST00000506649.5_1_6:109690056-109702985:-|nuORF ENST00000506649.5_1_6:109690056-109702985:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2183532714844 3 386.21822 1155.63283 NaN NaN NaN NaN NaN NaN NaN 50.037 1 49.988 49.488 50.488 -0.048824 0 0 0 0.96981 1 27054 27054 1.9064 0.1641 1 17576 4717 12159 12370 20743 20743 0.06124077033859976 GVQCHVPEF 9 Unmodified _GVQCHVPEF_ 0 0 0 ENST00000339007.3_1_19:18507576-18507849:-|nuORF;ENST00000595840.1_1_19:18507576-18508341:-|nuORF ENST00000339007.3_1_19:18507576-18507849:-|nuORF ENST00000339007.3_1_19:18507576-18507849:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.236328125 2 508.236927 1014.4593 NaN NaN NaN NaN NaN NaN NaN 21.085 1 21.085 20.585 21.585 0 0 0 0 0.82015 1 10646 10646 5.2307 0 1 17577 11946 12160 12371 20744 20744 -0.04735032014082208 GVQDFVPFV 9 Unmodified _GVQDFVPFV_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2623901367188 2 504.263468 1006.51238 -0.036664 -1.8488E-05 -0.42052 -0.00021205 -0.45718 -0.00023054 504.26320514273016 91.606 0.19181 91.125 90.977 91.169 -0.48093 18 11 2 0 0 0 0.16226 1 50041 50041 26.884 15.769 1 629560 17578 7776;16369 12161 12372 20745 20745 0.009386690402379827 GVQDKFGHLI 10 Unmodified _GVQDKFGHLI_ 0 0 0 REV__nc|ENSG00000105576|O14787-2|TNPO2 REV__nc|ENSG00000105576|O14787-2|TNPO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3072509765625 2 557.306198 1112.59784 NaN NaN NaN NaN NaN NaN NaN 44.964 1 44.942 44.442 45.442 -0.022064 0 0 0 0.98914 1 24138 24138 1.8442 1.1539 1 + 17579 18436 12162 12373 20746 20746 0.04604834225892773 GVQDKLIEDF 10 Unmodified _GVQDKLIEDF_ 0 0 0 REV__nc|ENSG00000182732|P49758-16|RGS6 REV__nc|ENSG00000182732|P49758-16|RGS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5367126464844 3 388.536278 1162.587 -0.013265 -5.1541E-06 1.3206 0.00051308 1.3073 0.00050793 388.53678253671364 17.768 0.15228 17.773 17.716 17.868 0.0050564 21 9 4 0 0 0 0.63399 1 8983 8983 5.4027 0 1 9543900 + 17580 29839 12163 12374 20747 20747 0.012213870609457445 GVQDLLVDF 9 Unmodified _GVQDLLVDF_ 0 0 0 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 MSMS AL20221201_MKP_PDAC_01 4 503.2669372558594 2 503.266207 1004.51786 NaN NaN NaN NaN NaN NaN NaN 58.521 1 52.447 51.947 52.947 -6.0745 0 0 0 0.08978 1 37500 37500 46.021 9.8939 1 + 17581 23952 12164 12375 20748 20748 0.01578347832048621 GVQEEDGSWS 10 Unmodified _GVQEEDGSWS_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2247924804688 2 547.225268 1092.43598 0.14707 8.0481E-05 -0.8798 -0.00048145 -0.73273 -0.00040097 547.2248137162942 77.458 0.40163 77.508 77.296 77.698 0.050102 59 16 6 0 0 0 0.69064 1 42818 42818 3.9444 0 1 10140000 17582 16348 12165 12376 20749 20749 -0.10653799317719859 GVQEGSDGRYF 11 Unmodified _GVQEGSDGRYF_ 0 0 0 REV__ENSG00000143217|ENST00000368012|NECTIN4 REV__ENSG00000143217|ENST00000368012|NECTIN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.774658203125 2 607.775459 1213.53637 NaN NaN NaN NaN NaN NaN NaN 76.295 1 75.815 75.315 76.315 -0.47945 0 0 0 0.94144 1 41763 41763 1.4819 0.68827 1 + 17583 20614 12166 12377 20750 20750 -0.06186142264073169 GVQGETLTSW 10 Unmodified _GVQGETLTSW_ 0 0 0 ENST00000474481.1_1_1:1425808-1431194:+|nuORF;nc|ENSG00000160072|Q5T9A4-3|ATAD3B;ENST00000472194.6_1_1:1413873-1431194:+|nuORF;ENSG00000160072|ENST00000673477|ATAD3B ENST00000474481.1_1_1:1425808-1431194:+|nuORF ENST00000474481.1_1_1:1425808-1431194:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.8451843261719 3 359.845223 1076.51384 0.23201 8.3487E-05 -1.0645 -0.00038304 -0.83246 -0.00029956 359.8446569360237 51.98 0.19077 51.921 51.792 51.983 -0.058918 17 8 3 0 0 0 0.71123 1 28160 28160 0.69767 0 1 1053200 17584 6683 12167 12378 20751 20751 -0.021357416616638147 GVQGQVVAMKH 11 Unmodified _GVQGQVVAMKH_ 0 0 0 REV__ENST00000460787.1_1_11:75137492-75141101:-|nuORF REV__ENST00000460787.1_1_11:75137492-75141101:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.2107849121094 3 385.209731 1152.60736 NaN NaN NaN NaN NaN NaN NaN 27.533 1 24.496 23.996 24.996 -3.0365 0 0 0 0.69464 1 15263 15263 9.7643 0 1 + 17585 27304 12168 12379 20752 20752 0.037162792397793964 GVQGRIQVT 9 Unmodified _GVQGRIQVT_ 0 0 0 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2778625488281 2 479.277441 956.540328 -0.12815 -6.1419E-05 1.3298 0.00063733 1.2016 0.00057591 479.27793422756594 23.13 0.16721 23.13 23.015 23.182 0 11 8 2 0 0 0 0.55775 1 11761 11761 3.9444 0 1 410570 17586 7237 12169 12380 20753 20753 0.06031992020314192 GVQHAAEI 8 Unmodified _GVQHAAEI_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7155456542969 2 412.716685 823.418816 NaN NaN NaN NaN NaN NaN NaN 16.018 1 16.018 15.518 16.518 0 0 0 0 0.97444 1 7771 7771 0.79363 0 1 + 17587 21189 12170 12381 20754 20754 4.3696577904484E-05 GVQHKPRTQ 9 Unmodified _GVQHKPRTQ_ 0 0 0 ENST00000307145.3_2_15:31666223-31666301:+|nuORF ENST00000307145.3_2_15:31666223-31666301:+|nuORF ENST00000307145.3_2_15:31666223-31666301:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.8662414550781 3 350.864952 1049.57303 NaN NaN NaN NaN NaN NaN NaN 12.307 1 9.8255 9.3255 10.325 -2.482 0 0 0 0.84021 1 6220 6220 2.7352 1.5419 1 17588 11635 12171 12382 20755 20755 0.050221991431726565 GVQIFMFTL 9 Unmodified _GVQIFMFTL_ 0 0 0 ENST00000490729.1_1_12:119175913-119176300:-|nuORF ENST00000490729.1_1_12:119175913-119176300:-|nuORF ENST00000490729.1_1_12:119175913-119176300:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2841796875 2 528.283346 1054.55214 NaN NaN NaN NaN NaN NaN NaN 83.244 1 83.244 82.744 83.744 0 0 0 0 0.82396 1 46171 46171 4.756 0.42677 1 17589 14264 12172 12383 20756 20756 0.027044727193015206 GVQIPRRG 8 Unmodified _GVQIPRRG_ 0 0 0 REV__nc|ENSG00000147889|P42771-3|CDKN2A REV__nc|ENSG00000147889|P42771-3|CDKN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7676391601562 2 441.767043 881.519533 0.38107 0.00016834 0.99008 0.00043738 1.3711 0.00060573 441.7675601953503 19.22 0.14352 19.228 19.176 19.319 0.0078506 13 9 2 0 0 0 0.80676 1 9773 9773 2.5775 0 1 387360 + 17590 29694 12173 12384 20757 20757 0.07403446431328575 GVQIPRRG 8 Unmodified _GVQIPRRG_ 0 0 0 REV__nc|ENSG00000147889|P42771-3|CDKN2A REV__nc|ENSG00000147889|P42771-3|CDKN2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 441.767043 881.519533 0.38107 0.00016834 0.99008 0.00043738 1.3711 0.00060573 441.7675601953503 19.22 0.14352 19.228 19.176 19.319 0.0078506 0 0 NaN 2.5775 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 387360 + 17591 29694 12173 12384 0.07403446431328575 GVQKHLIL 8 Unmodified _GVQKHLIL_ 0 0 0 ENST00000342992.10_3_2:179584742-179584871:-|nuORF ENST00000342992.10_3_2:179584742-179584871:-|nuORF ENST00000342992.10_3_2:179584742-179584871:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2906188964844 2 454.28982 906.565087 1.538 0.00069871 0.13829 6.2824E-05 1.6763 0.00076153 454.28974054482586 64.262 0.41972 58.086 57.861 58.28 -6.1757 27 21 2 0 0 0 0.67481 1 41696 41696 19.439 1.304 1 8258900 17592 11996 12174 12385 20758 20758 0.10806671893703879 GVQLLEQVY 9 Unmodified _GVQLLEQVY_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1944274902344 3 350.193963 1047.56006 1.3102 0.00045881 -0.042122 -1.4751E-05 1.268 0.00044406 350.1939643154058 28.329 0.48337 25.181 24.896 25.38 -3.1482 58 25 3 0 0 0 0.40476 2 15834 15715;15834 12.241 0.74595 1 21858000 17593 3072 12175 12386 20759;20760 20760 0.038183232404207956 GVQLTRWL 8 Unmodified _GVQLTRWL_ 0 0 0 REV__nc|ENSG00000157335|Q8NCF0-2|CLEC18C REV__nc|ENSG00000157335|Q8NCF0-2|CLEC18C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2723999023438 2 486.784902 971.55525 0.2112 0.00010281 0.41316 0.00020112 0.62435 0.00030392 486.7852114974721 35.064 0.28664 35.092 34.924 35.211 0.027401 32 12 3 0 0 0 0.80143 1 18460 18460 5.7604 2.8712 1 7163500 + 17594 20497 12176 12387 20761 20761 0.06833483888306091 GVQNEAFCTY 10 Unmodified _GVQNEAFCTY_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.243408203125 2 566.242406 1130.47026 NaN NaN NaN NaN NaN NaN NaN 26.666 1 26.666 26.166 27.166 0 0 0 0 0.96627 1 13717 13717 4.3292 0 1 + 17595 18194 12177 12388 20762 20762 -0.0897567443043954 GVQNKQFVKF 10 Unmodified _GVQNKQFVKF_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20221201_MKP_PDAC_01 4 398.8942565917969 3 398.892507 1193.65569 NaN NaN NaN NaN NaN NaN NaN 44.058 1 39.293 38.793 39.793 -4.7648 0 0 0 0.93038 1 26847 26847 6.6304 1.5829 1 + 17596 21434 12178 12389 20763 20763 0.0666109615131063 GVQNRKVTY 9 Unmodified _GVQNRKVTY_ 0 0 0 REV__nc|ENSG00000116580|Q3T8J9-3|GON4L REV__nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 355.8555297851562 3 355.533091 1063.57744 0.59558 0.00021175 1.8791 0.00066807 2.4747 0.00087982 355.53359813657164 25.447 0.29084 22.564 22.371 22.662 -2.8831 26 15 2 0 0 0 0.21242 1 13836 13836 2.9952 0 1 3038700 + 17597 19048 12179 12390 20764 20764 0.048196635660815446 GVQPRRRRQ 9 Unmodified _GVQPRRRRQ_ 0 0 0 ENSG00000186895|ENST00000334134|FGF3 ENSG00000186895|ENST00000334134|FGF3 ENSG00000186895|ENST00000334134|FGF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.845947265625 2 576.844679 1151.67481 0.041146 2.3735E-05 2.2608 0.0013041 2.3019 0.0013279 576.8462290349905 31.144 0.18854 31.175 31.059 31.247 0.030106 11 7 2 0 0 0 0.60485 1 16335 16335 2.0598 0.40713 1 1386700 17598 9518 12180 12391 20765 20765 0.10503490285600492 GVQPRRRRQ 9 Unmodified _GVQPRRRRQ_ 0 0 0 ENSG00000186895|ENST00000334134|FGF3 ENSG00000186895|ENST00000334134|FGF3 ENSG00000186895|ENST00000334134|FGF3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.844679 1151.67481 0.041146 2.3735E-05 2.2608 0.0013041 2.3019 0.0013279 576.8462290349905 31.144 0.18854 31.175 31.059 31.247 0.030106 0 0 NaN 2.0598 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1386700 17599 9518 12180 12391 0.10503490285600492 GVQRNFYLF 9 Unmodified _GVQRNFYLF_ 0 0 0 REV__ENST00000527827.1_1_8:145621508-145621857:-|nuORF REV__ENST00000527827.1_1_8:145621508-145621857:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.3030395507812 2 572.300916 1142.58728 NaN NaN NaN NaN NaN NaN NaN 93.778 1 93.357 92.857 93.857 -0.42044 0 0 0 0.84369 1 51240 51240 2.3027 0.4585 1 + 17600 28399 12181 12392 20766 20766 0.02168851571468622 GVQSPSHLL 9 Unmodified _GVQSPSHLL_ 0 0 0 REV__ENSG00000164946|ENST00000380880|FREM1;REV__nc|ENSG00000164946|Q5H8C1-4|FREM1 REV__nc|ENSG00000164946|Q5H8C1-4|FREM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2591857910156 2 469.258717 936.50288 -0.56186 -0.00026366 0.35811 0.00016805 -0.20374 -9.5609E-05 469.25887382319513 17.13 0.07761 17.131 17.092 17.169 0.0010548 26 21 2 0 0 0 0.59218 1 8493 8493 1.8442 0.19162 1 357130 + 17601 21965;29754 12182 12393 20767 20767 0.0320890075471425 GVQSTPYPP 9 Unmodified _GVQSTPYPP_ 0 0 0 REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2362670898438 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 15.636 1 15.636 15.136 16.136 0 0 0 0 0.84369 1 7548 7548 2.3027 0.24298 1 + 17602 24794 12183 12394 20768 20768 -0.014104943735333109 GVQSWSWY 8 Unmodified _GVQSWSWY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7772521972656 2 506.729792 1011.44503 0.17245 8.7384E-05 -0.95969 -0.0004863 -0.78724 -0.00039892 506.7299225101498 71.793 0.57479 71.317 70.95 71.525 -0.47609 31 22 2 0 0 0 8.7369 1 39182 39182 6.3541 0.59368 1 852250 17603 3021 12184 12395 20769 20769 -0.06023361170718999 GVQTGKPIEF 10 Unmodified _GVQTGKPIEF_ 0 0 0 REV__ENSG00000197417|ENST00000225519|SHPK REV__ENSG00000197417|ENST00000225519|SHPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2942504882812 2 538.292756 1074.57096 1.5442 0.00083125 1.4412 0.00077576 2.9854 0.001607 538.2935008375808 100.34 0.27847 100.3 100.15 100.43 -0.036301 26 9 4 0 0 0 0.25982 1 55731 55731 29.841 5.82 1 60453000 + 17604 23925 12185 12396 20770 20770 0.036657256147236694 GVQVFACSLLL 11 Unmodified _GVQVFACSLLL_ 0 0 0 REV__ENSG00000118292|ENST00000369099|C1orf54 REV__ENSG00000118292|ENST00000369099|C1orf54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2187805175781 3 383.882732 1148.62637 NaN NaN NaN NaN NaN NaN NaN 20.435 1 20.445 19.945 20.945 0.010553 0 0 0 0.93893 1 10422 10422 1.3296 0 1 + 17605 19143 12186 12397 20771 20771 0.05799815810837572 GVQWHDHSLLY 11 Unmodified _GVQWHDHSLLY_ 0 0 0 ENST00000537247.5_1_12:100988676-101004866:+|nuORF ENST00000537247.5_1_12:100988676-101004866:+|nuORF ENST00000537247.5_1_12:100988676-101004866:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.8330688476562 2 677.830569 1353.64658 1.0503 0.00071195 2.0707 0.0014036 3.121 0.0021155 677.8321624807453 53.489 0.25299 47.685 47.578 47.831 -5.8042 20 16 2 0 0 0 0.12183 1 33808 33808 39.95 5.0176 1 18626000 17606 14991 12187 12398 20772 20772 -0.016092972050046228 GVQWSDYSL 9 Unmodified _GVQWSDYSL_ 0 0 0 ENST00000570194.6_1_16:30024855-30026570:-|nuORF ENST00000570194.6_1_16:30024855-30026570:-|nuORF ENST00000570194.6_1_16:30024855-30026570:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1664123535156 3 352.166185 1053.47673 -0.34808 -0.00012258 -0.1759 -6.1945E-05 -0.52398 -0.00018453 352.1660221245843 24.24 0.26859 24.24 24.099 24.368 0 57 17 4 0 0 0 0.58466 1 12451 12451 1.1933 0 1 17877000 17607 15473 12188 12399 20773 20773 -0.047874132074412046 GVQYSYSLFH 10 Unmodified _GVQYSYSLFH_ 0 0 0 nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8612976074219 3 400.860984 1199.56112 0.33776 0.00013539 0.45642 0.00018296 0.79418 0.00031836 400.86108873746815 59.365 0.23652 58.874 58.75 58.987 -0.49079 17 10 2 0 0 0 0.68719 1 32298 32298 2.086 0.89267 1 1491800 17608 4455 12189 12400 20774 20774 -0.030674623906861598 GVRAGGGH 8 Unmodified _GVRAGGGH_ 0 0 0 REV__ENST00000275954.3_1_X:34675009-34675192:-|nuORF REV__ENST00000275954.3_1_X:34675009-34675192:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 355.6896667480469 2 355.688262 709.36197 NaN NaN NaN NaN NaN NaN NaN 17.612 1 15.025 14.525 15.525 -2.5866 0 0 0 0.97444 1 9225 9225 2.5775 1.7838 1 + 17609 25172 12190 12401 20775 20775 -0.004336331080594391 GVRAKPLS 8 Unmodified _GVRAKPLS_ 0 0 0 REV__nc|ENSG00000105227|Q9BXM0-3|PRX REV__nc|ENSG00000105227|Q9BXM0-3|PRX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2589111328125 2 414.25852 826.502486 NaN NaN NaN NaN NaN NaN NaN 17.485 1 17.49 16.99 17.99 0.0050564 0 0 0 0.97444 1 8820 8820 2.5775 1.7838 1 + 17610 18408 12191 12402 20776 20776 0.08229525825504425 GVRALAFH 8 Unmodified _GVRALAFH_ 0 0 0 nc|ENSG00000196792|Q13033-2|STRN3;ENSG00000196792|ENST00000357479|STRN3 nc|ENSG00000196792|Q13033-2|STRN3 nc|ENSG00000196792|Q13033-2|STRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7518005371094 2 435.750862 869.487171 0.89271 0.000389 0.77874 0.00033934 1.6714 0.00072834 435.7511020355701 50.699 0.21593 50.645 50.55 50.766 -0.053871 15 10 2 0 0 0 0.80624 1 27437 27437 2.8892 0.31174 1 820550 17611 9871 12192 12403 20777 20777 0.047206590283167316 GVRARRRKP 9 Unmodified _GVRARRRKP_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-3|POLM REV__nc|ENSG00000122678|Q9NP87-3|POLM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3527221679688 2 548.35214 1094.68973 NaN NaN NaN NaN NaN NaN NaN 45.024 1 45.002 44.502 45.502 -0.022064 0 0 0 0.85737 1 24171 24171 0.6015 0 1 + 17612 29609 12193 12404 20778 20778 0.14616982153597746 GVRCAAQA 8 Unmodified _GVRCAAQA_ 0 0 0 REV__ENST00000549311.7_1_12:53443879-53456445:+|nuORF REV__ENST00000549311.7_1_12:53443879-53456445:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1966247558594 2 388.197605 774.380657 NaN NaN NaN NaN NaN NaN NaN 15.979 1 15.965 15.465 16.465 -0.014067 0 0 0 0.97444 1 7866 7866 0.79363 0 1 + 17613 28694 12194 12405 20779 20779 -0.01555839528521119 GVRCCCQMCC 10 Unmodified _GVRCCCQMCC_ 0 0 0 nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130 nc|ENSG00000166448|Q8N3G9-3|TMEM130 nc|ENSG00000166448|Q8N3G9-3|TMEM130 MSMS AL20221201_MKP_PDAC_01 4 369.1226501464844 3 369.122789 1104.34654 NaN NaN NaN NaN NaN NaN NaN 15.028 1 12.501 12.001 13.001 -2.5273 0 0 0 1.0047 1 7678 7678 0.15932 0.15932 1 17614 7489 12195 12406 20780 20780 -0.20146154661597393 GVRCNEFI 8 Unmodified _GVRCNEFI_ 0 0 0 REV__nc|ENSG00000134755|Q02487-2|DSC2 REV__nc|ENSG00000134755|Q02487-2|DSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2315368652344 2 469.231645 936.448736 0.52263 0.00024524 -0.14524 -6.8152E-05 0.37739 0.00017708 469.23143980360373 41.234 0.38347 36.626 36.371 36.754 -4.6079 41 23 2 0 0 0 0.61462 1 24781 24781 24.674 0 1 18525000 + 17615 20005 12196 12407 20781 20781 -0.02203014668521064 GVRCPVYVRL 10 Unmodified _GVRCPVYVRL_ 0 0 0 REV__ENST00000531571.5_1_11:102960015-102962332:-|nuORF REV__ENST00000531571.5_1_11:102960015-102962332:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.8909301757812 3 387.890221 1160.64883 NaN NaN NaN NaN NaN NaN NaN 31.099 1 27.403 26.903 27.903 -3.6958 0 0 0 0.61917 1 17589 17589 17.443 0.87677 1 + 17616 28449 12197 12408 20782 20782 0.07493459999091101 GVRDQGEKGCL 11 Unmodified _GVRDQGEKGCL_ 0 0 0 ENST00000547832.5_1_12:50138213-50138309:+|nuORF ENST00000547832.5_1_12:50138213-50138309:+|nuORF ENST00000547832.5_1_12:50138213-50138309:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.8306884765625 3 387.860878 1160.56081 0.9371 0.00036347 1.3498 0.00052352 2.2869 0.00088699 387.8613665089215 32.79 0.36631 28.934 28.715 29.081 -3.8562 43 19 3 0 0 0 0.29699 1 18708 18708 10.315 10.315 1 22938000 17617 15131 12198 12409 20783 20783 -0.013052053821638765 GVRDRGRSY 9 Unmodified _GVRDRGRSY_ 0 0 0 REV__ENSG00000175718|ENST00000424776|RBMXL3 REV__ENSG00000175718|ENST00000424776|RBMXL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2813110351562 2 533.281046 1064.54754 0.90698 0.00048368 -0.13087 -6.9793E-05 0.77611 0.00041388 533.2806575360926 60.093 0.79396 53.978 53.701 54.495 -6.1147 91 42 3 0 0 0 0.16226 1 38706 38706 26.884 2.8631 1 210200000 + 17618 22889 12199 12410 20784 20784 0.01784724620756606 GVRDRGRSY 9 Unmodified _GVRDRGRSY_ 0 0 0 REV__ENSG00000175718|ENST00000424776|RBMXL3 REV__ENSG00000175718|ENST00000424776|RBMXL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.7740478515625 2 533.281046 1064.54754 0.90698 0.00048368 -0.13087 -6.9793E-05 0.77611 0.00041388 533.2806575360926 60.093 0.79396 53.978 53.701 54.495 -6.1147 91 42 3 0 0 0 0.19205 1 38842 38842 14.838 14.838 1 210200000 + 17619 22889 12199 12410 20785 20785 0.01784724620756606 GVRDSGAPIQL 11 Unmodified _GVRDSGAPIQL_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5419006347656 3 371.540134 1111.59857 0.2384 8.8577E-05 2.4996 0.00092869 2.738 0.0010173 371.54109209666984 48.754 0.37595 48.71 48.434 48.81 -0.04369 34 18 2 0 0 0 0.70147 1 26294 26294 4.1166 0.52014 1 16714000 17620 4494 12200 12411 20786 20786 0.04723628874944552 GVRDSGAPIQL 11 Unmodified _GVRDSGAPIQL_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 371.540134 1111.59857 -0.068501 -2.5451E-05 5.1221 0.0019031 5.0536 0.0018776 371.8765088370095 48.989 0.19556 48.989 48.932 49.128 0 0.13921 0.000287 NaN 4.1166 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2883600 17621 4494 12200 12411 0.04723628874944552 GVREGFSTI 9 Unmodified _GVREGFSTI_ 0 0 0 ENST00000552572.1_1_12:104388043-104390561:-|nuORF ENST00000552572.1_1_12:104388043-104390561:-|nuORF ENST00000552572.1_1_12:104388043-104390561:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.7337646484375 2 483.256174 964.497795 0.58096 0.00028075 -0.83984 -0.00040586 -0.25888 -0.00012511 483.2557209142557 36.336 0.42448 32.143 31.87 32.295 -4.1928 39 25 2 0 0 0 0.18882 1 21040 21040 10.824 4.6181 1 41500000 17622 15181 12201 12412 20787 20787 0.01412596892100737 GVREGLFRRF 10 Unmodified _GVREGLFRRF_ 0 0 0 REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.9029235839844 3 412.903518 1235.68872 NaN NaN NaN NaN NaN NaN NaN 35.316 1 35.316 34.816 35.816 0 0 0 0 0.98914 1 18664 18664 0.77653 0 1 + 17623 23376 12202 12413 20788 20788 0.08030722993999007 GVRELAWG 8 Unmodified _GVRELAWG_ 0 0 0 REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2411193847656 2 444.240327 886.466101 0.72172 0.00032062 0.62802 0.00027899 1.3497 0.00059961 444.2406754469869 59.16 0.30437 59.099 58.901 59.205 -0.060722 25 14 2 0 0 0 0.80624 1 32194 32194 2.8892 0.31174 1 2351600 + 17624 27704 12203 12414 20789 20789 0.018326489288028824 GVREVDDFF 9 Unmodified _GVREVDDFF_ 0 0 0 ENST00000505757.2_1_4:77266070-77266346:+|nuORF ENST00000505757.2_1_4:77266070-77266346:+|nuORF ENST00000505757.2_1_4:77266070-77266346:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.257080078125 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 17.919 1 17.919 17.419 18.419 0 0 0 0 0.84737 1 8872 8872 1.8442 0.36234 1 17625 14515 12204 12415 20790 20790 -0.034677243161013394 GVRFIFTL 8 Unmodified _GVRFIFTL_ 0 0 0 ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL ENST00000533086.5_1_19:15228578-15234387:-|nuORF ENST00000533086.5_1_19:15228578-15234387:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.7832336425781 2 476.78437 951.554188 NaN NaN NaN NaN NaN NaN NaN 18.726 1 18.732 18.232 19.232 0.0060463 0 0 0 0.97348 1 9501 9501 5.7604 1.4312 1 17626 2278 12205 12416 20791 20791 0.07647269519429756 GVRFYTGFMRE 11 Unmodified _GVRFYTGFMRE_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MSMS AL20221201_MKP_PDAC_01 4 454.8937072753906 3 454.89229 1361.65504 NaN NaN NaN NaN NaN NaN NaN 16.821 1 14.264 13.764 14.764 -2.557 0 0 0 0.94002 1 8744 8744 1.0136 0.50762 1 + 17627 19051 12206 12417 20792 20792 -0.011320665600351276 GVRGDQALEYL 11 Unmodified _GVRGDQALEYL_ 0 0 0 ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF ENST00000542472.1_1_12:6626979-6631036:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5514526367188 3 407.547177 1219.6197 1.2825 0.0005227 -0.82537 -0.00033638 0.45718 0.00018632 407.546858975977 20.626 0.92709 17.933 17.544 18.471 -2.693 155 55 4 0 0 0 0.65846 1 10881 10881 4.1166 1.4854 1 33296000 17628 15061 12207 12418 20793 20793 0.01867594183795518 GVRGGHGL 8 Unmodified _GVRGGHGL_ 0 0 0 nc|ENSG00000148204|Q5IJ48-3|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.7119750976562 2 376.711737 751.40892 1.6338 0.00061547 -0.082461 -3.1064E-05 1.5513 0.0005844 376.7114367699755 20.164 0.5014 17.508 17.22 17.722 -2.6564 71 32 3 0 0 0 0.80044 1 10705 10705 6.3541 0.59368 1 11372000 17629 5903 12208 12419 20794 20794 0.023272264430829637 GVRGPHKLA 9 Unmodified _GVRGPHKLA_ 0 0 0 REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7822875976562 2 467.782693 933.550834 NaN NaN NaN NaN NaN NaN NaN 32.489 1 32.518 32.018 33.018 0.029743 0 0 0 0.76439 1 17059 17059 7.2892 0 1 + 17630 17832 12209 12420 20795 20795 0.08140019465406567 GVRGPLLY 8 Unmodified _GVRGPLLY_ 0 0 0 REV__nc|ENSG00000167770|Q96FW1-2|OTUB1 REV__nc|ENSG00000167770|Q96FW1-2|OTUB1 MSMS AL20221201_MKP_PDAC_01 4 437.7599487304688 2 437.760895 873.507237 NaN NaN NaN NaN NaN NaN NaN 17.816 1 15.23 14.73 15.73 -2.5866 0 0 0 0.97348 1 9347 9347 5.7604 0 1 + 17631 29766 12210 12421 20796 20796 0.06542409968255924 GVRGRYEL 8 Unmodified _GVRGRYEL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2641906738281 2 475.264333 948.514114 NaN NaN NaN NaN NaN NaN NaN 29.298 1 29.328 28.828 29.828 0.030106 0 0 0 0.97444 1 15283 15283 5.2307 2.6532 1 17632 16031 12211 12422 20797 20797 0.03779722848844358 GVRGSGSI 8 Unmodified _GVRGSGSI_ 0 0 0 ENST00000318673.6_1_2:220033361-220034039:-|nuORF ENST00000318673.6_1_2:220033361-220034039:-|nuORF ENST00000318673.6_1_2:220033361-220034039:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.7048645019531 2 366.703577 731.392602 NaN NaN NaN NaN NaN NaN NaN 15.973 1 13.416 12.916 13.916 -2.557 0 0 0 0.96305 1 8242 8242 7.9102 2.6795 1 17633 11751 12212 12423 20798 20798 0.016161004863306516 GVRIYFSHI 9 Unmodified _GVRIYFSHI_ 0 0 0 ENST00000484514.1_1_3:78734943-78737853:-|nuORF ENST00000484514.1_1_3:78734943-78737853:-|nuORF ENST00000484514.1_1_3:78734943-78737853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2071228027344 3 364.538064 1090.59236 -0.27566 -0.00010049 -0.08137 -2.9662E-05 -0.35703 -0.00013015 364.53800203460173 51.296 0.2939 51.242 51.087 51.381 -0.053871 32 14 4 0 0 0 0.53666 1 27736 27736 2.9952 0.26005 1 2664700 17634 14154 12213 12424 20799 20799 0.050691554340801304 GVRKDRAL 8 Unmodified _GVRKDRAL_ 0 0 0 ENST00000608703.1_1_6:31783412-31784126:+|nuORF;ENST00000375651.6_1_6:31783412-31783736:+|nuORF ENST00000608703.1_1_6:31783412-31784126:+|nuORF ENST00000608703.1_1_6:31783412-31784126:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.7567749023438 2 457.780151 913.545748 -0.066852 -3.0603E-05 -0.35758 -0.00016369 -0.42443 -0.00019429 457.7801625488746 25.474 0.35739 22.59 22.425 22.782 -2.8831 38 19 3 0 0 0 8.7369 1 13857 13857 2.5775 0 1 6855900 17635 12478 12214 12425 20800 20800 0.08551715602800414 GVRKEWSL 8 Unmodified _GVRKEWSL_ 0 0 0 ENST00000523135.1_1_5:179680521-179691830:-|nuORF ENST00000523135.1_1_5:179680521-179691830:-|nuORF ENST00000523135.1_1_5:179680521-179691830:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.7738342285156 2 487.774534 973.534515 NaN NaN NaN NaN NaN NaN NaN 12.129 1 9.6468 9.1468 10.147 -2.482 0 0 0 0.97444 1 6123 6123 0.79363 0 1 17636 14763 12215 12426 20801 20801 0.04668893508653582 GVRKKVMEL 9 Unmodified _GVRKKVMEL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8820190429688 3 353.882955 1058.62703 0.83176 0.00029435 -0.44823 -0.00015862 0.38353 0.00013572 353.8827415488744 23.181 0.32831 20.403 20.269 20.597 -2.7784 45 30 2 0 0 0 0.2546 1 12504 12504 19.362 5.7471 1 8936100 17637 4858 12216 12427 20802 20802 0.10006655250549557 GVRKPWAFL 9 Unmodified _GVRKPWAFL_ 0 0 0 REV__ENST00000512712.2_1_4:2938262-2938409:+|nuORF REV__ENST00000512712.2_1_4:2938262-2938409:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.0284729003906 3 358.546671 1072.61818 -0.04405 -1.5794E-05 -0.18695 -6.703E-05 -0.231 -8.2824E-05 358.880917708373 14.638 0.16862 14.645 14.556 14.725 0.0073986 8 6 2 0 0 0 0.21798 1 7259 7259 1.1933 0.12188 1 732560 + 17638 28168 12217 12428 20803 20803 0.08478049676364208 GVRKVAPG 8 Unmodified _GVRKVAPG_ 0 0 0 ENST00000392754.7_2_10:126431146-126431500:-|nuORF ENST00000392754.7_2_10:126431146-126431500:-|nuORF ENST00000392754.7_2_10:126431146-126431500:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 392.2467041015625 2 392.245412 782.476272 NaN NaN NaN NaN NaN NaN NaN 83.134 1 76.959 76.459 77.459 -6.1757 0 0 0 0.9706 1 54655 54655 6.3541 0.59368 1 17639 12681 12218 12429 20804 20804 0.07633256654037268 GVRLGQKQ 8 Unmodified _GVRLGQKQ_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2676086425781 2 443.266876 884.519199 0.40966 0.00018159 1.1014 0.0004882 1.511 0.0006698 443.2672947369892 19.451 0.11359 19.459 19.401 19.514 0.0078487 10 6 2 0 0 0 0.80676 1 9912 9912 2.5775 0 1 594360 17640 9504 12219 12430 20805 20805 0.07232026711460549 GVRLKFNFWL 10 Unmodified _GVRLKFNFWL_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.24853515625 3 427.248514 1278.72371 NaN NaN NaN NaN NaN NaN NaN 4.8106 1 4.7377 4.2377 5.2377 -0.072869 0 0 0 1.0047 1 2378 2378 0.15932 0 1 + 17641 21625 12220 12431 20806 20806 0.09549965801988947 GVRLKFNFWL 10 Unmodified _GVRLKFNFWL_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2489318847656 3 427.248514 1278.72371 NaN NaN NaN NaN NaN NaN NaN 5.213 1 5.1355 4.6355 5.6355 -0.07749 0 0 0 1.0047 1 2575 2575 0.15932 0 1 + 17642 21625 12220 12431 20807 20807 0.09549965801988947 GVRLYYIGG 9 Unmodified _GVRLYYIGG_ 0 0 0 nc|ENSG00000166949|P84022-4|SMAD3;nc|ENSG00000166949|P84022-3|SMAD3;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2 nc|ENSG00000166949|P84022-4|SMAD3 nc|ENSG00000166949|P84022-4|SMAD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.276611328125 2 499.276909 996.539266 NaN NaN NaN NaN NaN NaN NaN 30.028 1 30.058 29.558 30.558 0.030106 0 0 0 0.84369 1 15693 15693 2.3027 0.4585 1 17643 7555 12221 12432 20808 20808 0.04085777651414446 GVRNPQQHL 9 Unmodified _GVRNPQQHL_ 0 0 0 ENSG00000070756|ENST00000318607|PABPC1 ENSG00000070756|ENST00000318607|PABPC1 ENSG00000070756|ENST00000318607|PABPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2056274414062 3 350.193068 1047.55738 0.87258 0.00030557 0.40016 0.00014013 1.2727 0.0004457 350.52733896701153 15.127 0.11687 12.6 12.52 12.637 -2.5273 22 17 2 0 0 0 0.54444 1 7693 7693 2.7352 0.23671 1 1091300 17644 1037 12222 12433 20809 20809 0.03549912626135665 GVRPASTFFP 10 Unmodified _GVRPASTFFP_ 0 0 0 nc|ENSG00000177234|Q8N1V8|LINC01561 nc|ENSG00000177234|Q8N1V8|LINC01561 nc|ENSG00000177234|Q8N1V8|LINC01561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1951293945312 3 360.194186 1077.56073 0.32244 0.00011614 3.837 0.0013821 4.1595 0.0014982 360.19512302288604 31.058 0.14213 30.956 30.891 31.034 -0.10269 7 5 2 0 0 0 0.70951 1 16154 16154 0.77653 0.078866 1 864080 17645 16404 12223 12434 20810 20810 0.02505162680131434 GVRPASTFFP 10 Unmodified _GVRPASTFFP_ 0 0 0 nc|ENSG00000177234|Q8N1V8|LINC01561 nc|ENSG00000177234|Q8N1V8|LINC01561 nc|ENSG00000177234|Q8N1V8|LINC01561 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.194186 1077.56073 -0.16878 -6.0793E-05 -0.52735 -0.00018995 -0.69613 -0.00025074 360.19379045174867 31.032 0.1377 31.032 30.953 31.091 0 0.038171 -0.0016289 NaN 0.77653 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 675100 17646 16404 12223 12434 0.02505162680131434 GVRPELQR 8 Unmodified _GVRPELQR_ 0 0 0 ENST00000463611.1_1_3:25824608-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF ENST00000463611.1_1_3:25824608-25824881:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7776794433594 2 477.777608 953.540663 -0.32198 -0.00015383 0.77677 0.00037112 0.45479 0.00021729 477.7778429134639 18.793 0.13074 18.793 18.729 18.86 0 16 9 3 0 0 0 0.80676 1 9360 9360 2.5775 0.27475 1 860630 17647 13699 12224 12435 20811 20811 0.062034117401822186 GVRPGSPPL 9 Unmodified _GVRPGSPPL_ 0 0 0 REV__ENSG00000198853|ENST00000361226|RUSC2 REV__ENSG00000198853|ENST00000361226|RUSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2571411132812 2 440.255977 878.497401 0.59438 0.00026168 1.2689 0.00055863 1.8632 0.0008203 440.2567225966859 30.301 0.22568 30.22 30.082 30.308 -0.080429 12 8 2 0 0 0 0.39863 1 15720 15720 12.532 0.89125 1 905040 + 17648 24080 12225 12436 20812 20812 0.053292219628815474 GVRPPMDVLV 10 Unmodified _GVRPPMDVLV_ 0 0 0 ENSG00000131400|ENST00000253719|NAPSA;ENST00000599181.1_1_19:50862995-50864373:-|nuORF ENSG00000131400|ENST00000253719|NAPSA ENSG00000131400|ENST00000253719|NAPSA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.5391845703125 3 361.539077 1081.5954 NaN NaN NaN NaN NaN NaN NaN 33.389 1 33.23 32.73 33.73 -0.15918 0 0 0 0.98914 1 17414 17414 0.77653 0 1 17649 4323 12226 12437 20813 20813 0.057866624965754454 GVRPRQRLW 9 Unmodified _GVRPRQRLW_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.34716796875 2 584.346523 1166.67849 1.5276 0.00089265 1.2653 0.00073938 2.7929 0.001632 584.3470860536686 104.48 0.069412 98.305 98.258 98.327 -6.1757 13 7 2 0 0 0 0.58865 1 69955 69955 2.0598 1.535 1 12063000 + 17650 20755 12227 12438 20814 20814 0.10182160059457601 GVRQQELVY 9 Unmodified _GVRQQELVY_ 0 0 0 REV__ENSG00000271383|ENST00000651566|NBPF19 REV__ENSG00000271383|ENST00000651566|NBPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2962036132812 2 546.29583 1090.57711 0.80978 0.00044238 -0.1954 -0.00010675 0.61438 0.00033563 546.2958018324146 57.755 0.25253 51.728 51.535 51.787 -6.0275 21 13 2 0 0 0 0.1773 1 36899 36899 25.399 4.9848 1 24269000 + 17651 24628 12228 12439 20815 20815 0.03544243846226891 GVRQRGRRR 9 Unmodified _GVRQRGRRR_ 0 0 0 ENST00000473039.5_1_9:126146084-126150011:-|nuORF ENST00000473039.5_1_9:126146084-126150011:-|nuORF ENST00000473039.5_1_9:126146084-126150011:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.9042663574219 3 380.902623 1139.68604 0.091615 3.4896E-05 0.136 5.1804E-05 0.22762 8.67E-05 380.9031070419397 19.997 0.17747 20.005 19.93 20.108 0.0078487 12 8 2 0 0 0 0.61256 1 10234 10234 0.26902 0.033176 1 441540 17652 13918 12229 12440 20816 20816 0.12178312379751333 GVRRGGGD 8 Unmodified _GVRRGGGD_ 0 0 0 ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2028503417969 2 387.204276 772.393999 NaN NaN NaN NaN NaN NaN NaN 19.282 1 19.282 18.782 19.782 0 0 0 0 0.97444 1 9634 9634 2.5775 1.7838 1 17653 14534 12230 12441 20817 20817 -0.001302654249002444 GVRRHYPP 8 Unmodified _GVRRHYPP_ 0 0 0 REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7738647460938 2 491.272493 980.530432 -0.20522 -0.00010082 -0.89501 -0.00043969 -1.1002 -0.00054051 491.2722118453613 23.431 0.40274 23.431 23.126 23.529 0 25 19 2 0 0 0 0.80143 1 11974 11974 5.7604 1.0044 1 598430 + 17654 29828 12231 12442 20818 20818 0.039388488056033566 GVRRRNLLL 9 Unmodified _GVRRRNLLL_ 0 0 0 ENST00000544844.5_1_11:64085187-64085430:-|nuORF ENST00000544844.5_1_11:64085187-64085430:-|nuORF ENST00000544844.5_1_11:64085187-64085430:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2394104003906 3 366.240241 1095.69889 NaN NaN NaN NaN NaN NaN NaN 26.844 1 26.873 26.373 27.373 0.028664 0 0 0 0.84021 1 13937 13937 2.7352 0.23671 1 17655 15083 12232 12443 20819 20819 0.15487330719270176 GVRRRQASASS 11 Unmodified _GVRRRQASASS_ 0 0 0 ENST00000376962.9_1_9:74978504-74980043:-|nuORF ENST00000376962.9_1_9:74978504-74980043:-|nuORF ENST00000376962.9_1_9:74978504-74980043:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2176818847656 3 392.218165 1173.63267 NaN NaN NaN NaN NaN NaN NaN 31.957 1 31.987 31.487 32.487 0.030106 0 0 0 0.94148 1 16765 16765 1.4551 0 1 17656 12513 12233 12444 20820 20820 0.0527947008654337 GVRRTELL 8 Unmodified _GVRRTELL_ 0 0 0 REV__nc|ENSG00000100239|O75170-6|PPP6R2 REV__nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2894287109375 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.80044 1 62984 62984 6.3541 0 1 250360000 + 17657 18031 12234 12445 20821 20821 0.08748582399982752 GVRRVHCMVK 10 Unmodified _GVRRVHCMVK_ 0 0 0 REV__ENSG00000138356|ENST00000374700|AOX1 REV__ENSG00000138356|ENST00000374700|AOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5545043945312 3 395.554955 1183.64304 0.0086814 3.434E-06 0.64058 0.00025338 0.64926 0.00025682 395.5552013754006 21.949 0.35527 21.963 21.778 22.134 0.013796 51 16 4 0 0 0 0.72196 1 11172 11172 0.15932 0 1 5663500 + 17658 20324 12235 12446 20822 20822 0.058560382157793356 GVRRWGSWCG 10 Unmodified _GVRRWGSWCG_ 0 0 0 REV__ENST00000579003.1_1_17:56409563-56409842:-|nuORF REV__ENST00000579003.1_1_17:56409563-56409842:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8566589355469 3 388.52242 1162.54543 -0.03544 -1.3769E-05 0.41553 0.00016144 0.38009 0.00014767 388.52278967323065 16.004 0.32291 16.009 15.952 16.275 0.0050564 34 28 2 0 0 0 0.72196 1 8022 8022 0.15932 0 1 445070 + 17659 29050 12236 12447 20823 20823 -0.02934027388710092 GVRSDLHFF 9 Unmodified _GVRSDLHFF_ 0 0 0 REV__ENST00000415922.6_1_6:26638937-26643930:-|nuORF REV__ENST00000415922.6_1_6:26638937-26643930:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2786254882812 2 539.277441 1076.54033 NaN NaN NaN NaN NaN NaN NaN 23.415 1 23.415 22.915 23.915 0 0 0 0 0.84737 1 11935 11935 1.8442 0.19162 1 + 17660 26766 12237 12448 20824 20824 0.005119920203242145 GVRSGVRF 8 Unmodified _GVRSGVRF_ 0 0 0 REV__ENSG00000278803|ENST00000458091|PWWP4 REV__ENSG00000278803|ENST00000458091|PWWP4 MSMS AL20221201_MKP_PDAC_01 4 439.2526245117188 2 439.253769 876.492984 NaN NaN NaN NaN NaN NaN NaN 90.058 1 83.883 83.383 84.383 -6.1757 0 0 0 0.97444 1 59464 59464 2.8892 0 1 + 17661 24675 12238 12449 20825 20825 0.049797575399907146 GVRSLSFYQH 10 Unmodified _GVRSLSFYQH_ 0 0 0 ENSG00000198354|ENST00000360028|DCAF12L2 ENSG00000198354|ENST00000360028|DCAF12L2 ENSG00000198354|ENST00000360028|DCAF12L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5156860351562 3 398.540245 1192.59891 NaN NaN NaN NaN NaN NaN NaN 19.258 1 19.266 18.766 19.766 0.0078487 0 0 0 0.98914 1 9791 9791 0.77653 0 1 17662 10079 12239 12450 20826 20826 0.01031048594791173 GVRSPDKTAK 10 Unmodified _GVRSPDKTAK_ 0 0 0 REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.5374755859375 3 353.536612 1057.58801 NaN NaN NaN NaN NaN NaN NaN 18.902 1 18.902 18.402 19.402 0 0 0 0 0.99248 1 9426 9426 0.62683 0.16849 1 + 17663 20285 12240 12451 20827 20827 0.06151646220496332 GVRSVRPVA 9 Unmodified _GVRSVRPVA_ 0 0 0 REV__ENST00000260599.10_3_2:27309647-27309728:+|nuORF REV__ENST00000260599.10_3_2:27309647-27309728:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7879028320312 2 470.787976 939.561398 0.40302 0.00018974 -0.4113 -0.00019363 -0.00828 -3.8981E-06 470.78764253020336 17.596 0.21157 15.01 14.925 15.136 -2.5866 86 37 3 0 0 0 0.28023 1 9177 9177 18.146 3.3081 1 17525000 + 17664 24965 12241 12452 20828 20828 0.08920002119850778 GVRTASVQKHQ 11 Unmodified _GVRTASVQKHQ_ 0 0 0 ENST00000477275.1_1_10:133959024-133981894:+|nuORF ENST00000477275.1_1_10:133959024-133981894:+|nuORF ENST00000477275.1_1_10:133959024-133981894:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2277221679688 3 404.226549 1209.65782 NaN NaN NaN NaN NaN NaN NaN 16.048 1 16.048 15.548 16.548 0 0 0 0 0.94165 1 7789 7789 0.45452 0 1 17665 13995 12242 12453 20829 20829 0.0613752488911814 GVRTEELQRL 10 Unmodified _GVRTEELQRL_ 0 0 0 ENST00000517521.5_1_8:30240060-30242719:-|nuORF ENST00000517521.5_1_8:30240060-30242719:-|nuORF ENST00000517521.5_1_8:30240060-30242719:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8926696777344 3 400.894688 1199.66223 0.0025977 1.0414E-06 -2.4499 -0.00098217 -2.4473 -0.00098113 400.8936279850246 53.147 0.1965 53.084 52.961 53.157 -0.063423 17 9 2 0 0 0 0.71123 1 28834 28834 0.69767 0 1 2485200 17666 14677 12243 12454 20830 20830 0.07038989312013655 GVRTSGVQNLL 11 Unmodified _GVRTSGVQNLL_ 0 0 0 ENST00000496584.1_1_3:112189035-112189236:-|nuORF ENST00000496584.1_1_3:112189035-112189236:-|nuORF ENST00000496584.1_1_3:112189035-112189236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8880920410156 3 381.887533 1142.64077 -0.39165 -0.00014956 0.099201 3.7883E-05 -0.29244 -0.00011168 381.88767677298006 21.91 0.1585 21.91 21.829 21.988 0 32 20 2 0 0 0 0.69316 1 11094 11094 2.2527 0.32522 1 1423200 17667 14374 12244 12455 20831 20831 0.07515604283344146 GVRWGSGG 8 Unmodified _GVRWGSGG_ 0 0 0 ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1924743652344 2 388.195919 774.377286 NaN NaN NaN NaN NaN NaN NaN 15.186 1 15.186 14.686 15.686 0 0 0 0 0.97444 1 7294 7294 0.79363 0 1 17668 14235 12245 12456 20832 20832 -0.018927663108456727 GVRWGSGG 8 Unmodified _GVRWGSGG_ 0 0 0 ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.19677734375 2 388.195919 774.377286 NaN NaN NaN NaN NaN NaN NaN 17.169 1 17.17 16.67 17.67 0.0010548 0 0 0 0.97444 1 8518 8518 0.79363 0 1 17669 14235 12245 12456 20833 20833 -0.018927663108456727 GVRWGSGG 8 Unmodified _GVRWGSGG_ 0 0 0 ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF ENST00000489226.5_1_9:130485405-130489873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1949768066406 2 388.195919 774.377286 NaN NaN NaN NaN NaN NaN NaN 21.282 1 21.296 20.796 21.796 0.013796 0 0 0 0.97444 1 10889 10889 0.79363 0 1 17670 14235 12245 12456 20834 20834 -0.018927663108456727 GVRWLSTH 8 Unmodified _GVRWLSTH_ 0 0 0 ENST00000465184.1_1_7:94294121-94298055:+|nuORF;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10 ENST00000465184.1_1_7:94294121-94298055:+|nuORF ENST00000465184.1_1_7:94294121-94298055:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2588806152344 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 18.071 1 18.071 17.571 18.571 0 0 0 0 0.97444 1 8958 8958 0.79363 0 1 17671 10695 12246 12457 20835 20835 0.024477401944068333 GVRWLSTH 8 Unmodified _GVRWLSTH_ 0 0 0 ENST00000465184.1_1_7:94294121-94298055:+|nuORF;ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10 ENST00000465184.1_1_7:94294121-94298055:+|nuORF ENST00000465184.1_1_7:94294121-94298055:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2448425292969 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 16.495 1 16.5 16 17 0.0050564 0 0 0 0.97444 1 8274 8274 0.79363 0 1 17672 10695 12246 12457 20836 20836 0.024477401944068333 GVRWNPGGPL 10 Unmodified _GVRWNPGGPL_ 0 0 0 REV__ENST00000537356.3_1_X:103357254-103357665:+|nuORF REV__ENST00000537356.3_1_X:103357254-103357665:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.5274047851562 3 351.526047 1051.55631 NaN NaN NaN NaN NaN NaN NaN 16.507 1 13.95 13.45 14.45 -2.557 0 0 0 0.90096 1 8556 8556 4.1895 0 1 + 17673 28546 12247 12458 20837 20837 0.03259698257238597 GVRWSEALGSF 11 Unmodified _GVRWSEALGSF_ 0 0 0 ENST00000397717.6_2_6:3000237-3003919:+|nuORF ENST00000397717.6_2_6:3000237-3003919:+|nuORF ENST00000397717.6_2_6:3000237-3003919:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8733215332031 3 403.540134 1207.59857 -0.13898 -5.6084E-05 0.28373 0.0001145 0.14475 5.8412E-05 403.8745271530155 17.517 0.23248 17.522 17.388 17.621 0.0050564 32 19 2 0 0 0 0.72952 1 8801 8801 0.50596 0 1 659290 17674 12830 12248 12459 20838 20838 0.003076288749298328 GVRWSIMSL 9 Unmodified _GVRWSIMSL_ 0 0 0 nc|ENSG00000183423|Q3SXY7-2|LRIT3;ENSG00000183423|ENST00000594814|LRIT3 nc|ENSG00000183423|Q3SXY7-2|LRIT3 nc|ENSG00000183423|Q3SXY7-2|LRIT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1911315917969 3 350.191788 1047.55354 NaN NaN NaN NaN NaN NaN NaN 20.321 1 20.332 19.832 20.832 0.010553 0 0 0 0.84564 1 10361 10361 1.0715 0 1 17675 9148 12249 12460 20839 20839 0.03166106808043878 GVRWTPRRA 9 Unmodified _GVRWTPRRA_ 0 0 0 REV__ENST00000246024.6_1_20:8000232-8000430:-|nuORF REV__ENST00000246024.6_1_20:8000232-8000430:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8640747070312 3 366.880825 1097.62064 -0.53535 -0.00019641 -0.63385 -0.00023255 -1.1692 -0.00042895 366.88058663958867 19.242 0.17669 19.265 19.144 19.32 0.023106 14 9 3 0 0 0 0.58865 1 9672 9672 1.0715 0.61312 1 329310 + 17676 24861 12250 12461 20840 20840 0.0757389813404643 GVRYDREFR 9 Unmodified _GVRYDREFR_ 0 0 0 REV__nc|ENSG00000119771|Q96CT2-2|KLHL29 REV__nc|ENSG00000119771|Q96CT2-2|KLHL29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8778686523438 3 399.875628 1196.60505 NaN NaN NaN NaN NaN NaN NaN 15.057 1 15.043 14.543 15.543 -0.014067 0 0 0 0.85737 1 7369 7369 0.26902 0.1097 1 + 17677 19210 12251 12462 20841 20841 0.01461566826287708 GVRYNTGY 8 Unmodified _GVRYNTGY_ 0 0 0 REV__ENSG00000144410|ENST00000272852|CPO REV__ENSG00000144410|ENST00000272852|CPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2272338867188 2 465.227417 928.44028 0.13367 6.2186E-05 0.73607 0.00034244 0.86974 0.00040463 465.22768778597043 24.04 0.30088 24.04 23.873 24.174 0 43 14 4 0 0 0 0.80044 1 12342 12342 6.3541 1.1234 1 13058000 + 17678 20706 12252 12463 20842 20842 -0.026802453134791904 GVRYQQSWL 9 Unmodified _GVRYQQSWL_ 0 0 0 nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5162963867188 3 379.533091 1135.57744 NaN NaN NaN NaN NaN NaN NaN 18.734 1 18.734 18.234 19.234 0 0 0 0 0.84369 1 9334 9334 1.1933 0.41681 1 17679 1500 12253 12464 20843 20843 0.015076635660989268 GVRYRLALL 9 Unmodified _GVRYRLALL_ 0 0 0 ENST00000411689.6_1_6:46620850-46623676:+|nuORF ENST00000411689.6_1_6:46620850-46623676:+|nuORF ENST00000411689.6_1_6:46620850-46623676:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.8901977539062 3 354.225709 1059.6553 NaN NaN NaN NaN NaN NaN NaN 34.97 1 34.748 34.248 35.248 -0.2224 0 0 0 0.85261 1 18295 18295 1.1933 0 1 17680 12977 12254 12465 20844 20844 0.12785721222121538 GVSACAAE 8 Unmodified _GVSACAAE_ 0 0 0 REV__ENSG00000058063|ENST00000323116|ATP11B REV__ENSG00000058063|ENST00000323116|ATP11B MSMS AL20221201_MKP_PDAC_01 4 353.8627319335938 2 354.155071 706.29559 NaN NaN NaN NaN NaN NaN NaN 15.19 1 12.663 12.163 13.163 -2.5273 0 0 0 0.97444 1 7771 7771 0.79363 0 1 + 17681 17309 12255 12466 20845 20845 -0.06930629784994835 GVSAFSLLFL 10 Unmodified _GVSAFSLLFL_ 0 0 0 REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.5350952148438 3 351.870821 1052.59063 NaN NaN NaN NaN NaN NaN NaN 47.021 1 41.941 41.441 42.441 -5.0805 0 0 0 0.7417 1 29136 29136 8.9762 0.82072 1 + 17682 25051 12256 12467 20846 20846 0.06644101625465737 GVSANMMKKR 10 Unmodified _GVSANMMKKR_ 0 0 0 ENST00000485565.6_1_9:91041454-91083353:+|nuORF;ENSG00000106723|ENST00000375859|SPIN1 ENST00000485565.6_1_9:91041454-91083353:+|nuORF ENST00000485565.6_1_9:91041454-91083353:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.5502624511719 3 374.535449 1120.58452 0.83426 0.00031246 2.1595 0.0008088 2.9937 0.0011213 374.53629940234094 26.29 0.17756 23.339 23.281 23.459 -2.9511 14 9 2 0 0 0 0.23862 1 14491 14491 1.9064 0 1 3838500 17683 2455 12257 12468 20847 20847 0.029049368506321116 GVSAPDAMG 9 Unmodified _GVSAPDAMG_ 0 0 0 REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 REV__nc|ENSG00000169258|Q7Z2K8-2|GPRIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 804.3575439453125 1 804.35563 803.348354 1.3224 0.0010637 0.74831 0.00060191 2.0707 0.0016656 804.3559335367288 87.355 0.47559 81.18 80.93 81.405 -6.1757 44 25 2 0 0 0 0.39863 1 57482 57482 12.532 3.1841 1 21079000 + 17684 22391 12258 12469 20848 20848 -0.0611867172217444 GVSATLNYE 9 Unmodified _GVSATLNYE_ 0 0 0 nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A;ENST00000533623.1_1_11:123988218-123988639:+|nuORF nc|ENSG00000110002|O00534-4|VWA5A nc|ENSG00000110002|O00534-4|VWA5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.46337890625 1 953.457453 952.450176 -0.83389 -0.00079507 0.33429 0.00031873 -0.49959 -0.00047634 953.4579098958955 33.758 0.2717 33.758 33.617 33.888 0 31 13 3 0 0 0 0.58865 1 17792 17792 2.0598 0.40713 1 10161000 17685 2689 12259 12470 20849 20849 -0.027951020987757147 GVSAWGYYIGT 11 Unmodified _GVSAWGYYIGT_ 0 0 0 REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF REV__ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.568359375 3 391.857351 1172.55022 1.2284 0.00048137 1.007 0.00039459 2.2354 0.00087596 391.8578999332784 42.495 0.39388 37.811 37.575 37.969 -4.6846 62 25 3 0 0 0 0.30572 1 25567 25567 0.45452 0.45452 1 50638000 + 17686 20030 12260 12471 20850 20850 -0.029148647649662962 GVSDDNLQQNL 11 Unmodified _GVSDDNLQQNL_ 0 0 0 REV__nc|ENSG00000174197|Q8IWI9-3|MGA REV__nc|ENSG00000174197|Q8IWI9-3|MGA MSMS AL20221201_MKP_PDAC_01 4 401.5248413085938 3 401.526441 1201.55749 NaN NaN NaN NaN NaN NaN NaN 28.948 1 25.646 25.146 26.146 -3.3016 0 0 0 0.93224 1 16191 16191 2.6312 0.72486 1 + 17687 22773 12261 12472 20851 20851 -0.03522176955175382 GVSDHSAF 8 Unmodified _GVSDHSAF_ 0 0 0 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5208129882812 2 410.185217 818.355882 NaN NaN NaN NaN NaN NaN NaN 40.846 1 40.846 40.346 41.346 0 0 0 0 0.95201 1 21984 21984 10.183 3.8293 1 17688 622 12262 12473 20852 20852 -0.06056196130236913 GVSDRCKDF 9 Unmodified _GVSDRCKDF_ 0 0 0 ENSG00000151233|ENST00000398675|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 MSMS AL20221201_MKP_PDAC_01 4 513.7374877929688 2 513.737291 1025.46003 NaN NaN NaN NaN NaN NaN NaN 58.125 1 52.098 51.598 52.598 -6.0275 0 0 0 0.6306 1 37228 37228 11.64 2.2929 1 17689 6099 12263 12474 20853 20853 -0.05168237365023742 GVSEAASL 8 Unmodified _GVSEAASL_ 0 0 0 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1884155273438 2 367.189968 732.365384 NaN NaN NaN NaN NaN NaN NaN 33.25 1 33.25 32.75 33.75 0 0 0 0 0.97348 1 17421 17421 5.7604 0 1 17690 2934;16128 12264 12475 20854 20854 -0.011504278447205252 GVSENFSSMNY 11 Unmodified _GVSENFSSMNY_ 0 0 0 REV__nc|ENSG00000101333|Q15147-2|PLCB4 REV__nc|ENSG00000101333|Q15147-2|PLCB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8378601074219 3 412.173011 1233.4972 NaN NaN NaN NaN NaN NaN NaN 21.189 1 21.189 20.689 21.689 0 0 0 0 0.94184 1 10705 10705 0.40827 0.24894 1 + 17691 18160 12265 12476 20855 20855 -0.1102061060989854 GVSERKMTPF 10 Unmodified _GVSERKMTPF_ 0 0 0 ENSG00000188368|ENST00000341747|PRR19;ENST00000598490.1_1_19:42814241-42814889:+|nuORF ENSG00000188368|ENST00000341747|PRR19 ENSG00000188368|ENST00000341747|PRR19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5351867675781 3 384.534103 1150.58048 1.2909 0.00049638 0.90112 0.00034651 2.192 0.0008429 384.53440181138143 90.151 1.1727 83.975 83.598 84.771 -6.1757 190 68 4 0 0 0 0.5905 1 59988 59988 6.6304 0 1 92254000 17692 9653 12266 12477 20856 20856 0.011211706285621403 GVSFAAYHSKC 11 Unmodified _GVSFAAYHSKC_ 0 0 0 REV__ENST00000582625.1_1_17:77043224-77044167:+|nuORF REV__ENST00000582625.1_1_17:77043224-77044167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5186157226562 3 390.518453 1168.53353 -0.7883 -0.00030784 0.48847 0.00019075 -0.29983 -0.00011709 390.5187964262082 30.166 0.22351 30.166 30.1 30.324 0 18 10 2 0 0 0 0.71618 1 15662 15662 1.1098 0 1 1234500 + 17693 22759 12267 12478 20857 20857 -0.04399688922558198 GVSFILLR 8 Unmodified _GVSFILLR_ 0 0 0 ENST00000453424.6_1_10:45952026-45952551:-|nuORF ENST00000453424.6_1_10:45952026-45952551:-|nuORF ENST00000453424.6_1_10:45952026-45952551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7843627929688 2 452.78437 903.554188 0.68179 0.0003087 -0.71895 -0.00032553 -0.037156 -1.6824E-05 452.78390296424453 67.446 0.23377 67.464 67.338 67.572 0.018028 23 11 3 0 0 0 0.31612 1 37020 37020 53.576 6.6547 1 7010400 17694 13556 12268 12479 20858 20858 0.09855269519425747 GVSFILRL 8 Unmodified _GVSFILRL_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS AL20221201_MKP_PDAC_01 4 452.7832946777344 2 452.78437 903.554188 NaN NaN NaN NaN NaN NaN NaN 92.475 1 86.3 85.8 86.8 -6.1757 0 0 0 0.33381 1 61158 61158 60.39 9.5345 1 + 17695 21045 12269 12480 20859 20859 0.09855269519414378 GVSFILRL 8 Unmodified _GVSFILRL_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS AL20221201_MKP_PDAC_01 4 452.7843627929688 2 452.78437 903.554188 NaN NaN NaN NaN NaN NaN NaN 92.66 1 86.484 85.984 86.984 -6.1757 0 0 0 0.33381 1 61283 61283 60.39 2.9182 1 + 17696 21045 12269 12480 20860 20860 0.09855269519414378 GVSGERTN 8 Unmodified _GVSGERTN_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.200927734375 2 410.201399 818.388245 NaN NaN NaN NaN NaN NaN NaN 17.146 1 17.147 16.647 17.647 0.0010548 0 0 0 0.97444 1 8504 8504 0.79363 0 1 + 17697 22811 12270 12481 20861 20861 -0.02821408727254493 GVSGFFHN 8 Unmodified _GVSGFFHN_ 0 0 0 ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF ENST00000425988.1_1_13:23411483-23411888:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7046813964844 2 432.703577 863.392602 1.1419 0.00049411 1.7973 0.00077771 2.9392 0.0012718 432.70439584073694 87.262 0.26805 81.086 80.895 81.163 -6.1757 19 14 2 0 0 0 0.80676 1 57560 57560 2.5775 0 1 8115200 17698 13173 12271 12482 20862 20862 -0.044558995136753765 GVSGHLIK 8 Unmodified _GVSGHLIK_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.7459411621094 2 405.745245 809.475937 1.3241 0.00053724 -0.2556 -0.00010371 1.0685 0.00043353 405.74532307531916 21.614 0.20971 18.879 18.786 18.995 -2.7348 17 11 2 0 0 0 0.44122 1 11628 11628 40.449 2.2974 1 1395200 + 17699 19509 12272 12483 20863 20863 0.06357836934182615 GVSGKRLR 8 Unmodified _GVSGKRLR_ 0 0 0 REV__ENSG00000164363|ENST00000324642|SLC6A18 REV__ENSG00000164363|ENST00000324642|SLC6A18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7754211425781 2 436.774868 871.535184 1.0575 0.00046191 0.35486 0.000155 1.4124 0.0006169 436.7749211350576 90.047 0.659 83.872 83.544 84.203 -6.1757 106 37 4 0 0 0 0.80676 1 59698 59698 2.5775 0 1 164060000 + 17700 21913 12273 12484 20864 20864 0.09427732948370249 GVSGQPHLHL 10 Unmodified _GVSGQPHLHL_ 0 0 0 ENST00000533871.6_2_11:133801972-133806022:-|nuORF ENST00000533871.6_2_11:133801972-133806022:-|nuORF ENST00000533871.6_2_11:133801972-133806022:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7833862304688 2 522.78289 1043.55123 NaN NaN NaN NaN NaN NaN NaN 31.397 1 31.294 30.794 31.794 -0.10269 0 0 0 0.97302 1 16320 16320 3.5965 0.70727 1 17701 14943 12274 12485 20865 20865 0.031193943946163927 GVSHFFREL 9 Unmodified _GVSHFFREL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.526123046875 3 364.525936 1090.55598 NaN NaN NaN NaN NaN NaN NaN 15.123 1 15.123 14.623 15.623 0 0 0 0 0.85261 1 7258 7258 1.1933 0 1 17702 1451 12275 12486 20866 20866 0.0143227853739063 GVSHPYSQHL 10 Unmodified _GVSHPYSQHL_ 0 0 0 ENST00000595316.5_1_19:51379973-51380306:+|nuORF;ENST00000597727.5_1_19:51376719-51380306:+|nuORF;nc|ENSG00000167751|P20151-2|KLK2 ENST00000595316.5_1_19:51379973-51380306:+|nuORF ENST00000595316.5_1_19:51379973-51380306:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7785034179688 2 562.777805 1123.54106 0.58366 0.00032847 1.9694 0.0011083 2.5531 0.0014368 562.7787451396541 49.976 0.32266 49.976 49.773 50.096 0 22 14 2 0 0 0 0.5905 1 27528 27528 11.64 3.047 1 2033900 17703 15755 12276 12487 20867 20867 -0.01577213330642735 GVSICVVML 9 Unmodified _GVSICVVML_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7507629394531 2 460.750824 919.487096 -0.2656 -0.00012237 0.38353 0.00017671 0.11793 5.4336E-05 460.75092897703604 30.473 0.14424 30.473 30.422 30.566 0 9 6 2 0 0 0 0.54444 1 15852 15852 4.756 0.42677 1 1578300 + 17704 16785 12277 12488 20868 20868 0.02413154921782734 GVSIHSATSL 10 Unmodified _GVSIHSATSL_ 0 0 0 ENSG00000110921|ENST00000228510|MVK ENSG00000110921|ENST00000228510|MVK ENSG00000110921|ENST00000228510|MVK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.261474609375 2 486.261456 970.50836 -0.39892 -0.00019398 -0.12249 -5.9564E-05 -0.52142 -0.00025354 486.26126706775096 29.816 0.27614 29.816 29.76 30.036 0 27 15 3 0 0 0 0.62068 1 15553 15553 10.074 0 1 3697900 17705 2751 12278 12489 20869 20869 0.021925795465108422 GVSIIDGFYKI 11 Unmodified _GVSIIDGFYKI_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.559814453125 3 404.560535 1210.65977 0.2917 0.00011801 -0.80097 -0.00032404 -0.50927 -0.00020603 404.5602229104027 58.599 0.22972 58.109 57.982 58.212 -0.49079 24 10 3 0 0 0 0.48615 1 31868 31868 9.7643 1.8189 1 3286000 + 17706 17404 12279 12490 20870 20870 0.06287140854374229 GVSIIDGFYKI 11 Unmodified _GVSIIDGFYKI_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3373413085938 2 606.337164 1210.65977 0.24979 0.00015146 -0.78336 -0.00047498 -0.53357 -0.00032352 606.3368241589185 58.59 0.22972 58.099 57.982 58.212 -0.49079 17 10 2 0 0 0 0.46578 1 31878 31878 18.146 5.1039 1 3189600 + 17707 17404 12279 12490 20871 20871 0.06287140854374229 GVSIIDGFYKI 11 Unmodified _GVSIIDGFYKI_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5606994628906 3 404.560535 1210.65977 0.5131 0.00020758 -0.40852 -0.00016527 0.10458 4.231E-05 404.56044072384304 58.214 0.27908 58.153 57.995 58.274 -0.060719 30 13 3 0 0 0 0.25654 1 31683 31683 17.863 9.9178 1 7517600 + 17708 17404 12279 12490 20872 20872 0.06287140854374229 GVSIIDGFYKI 11 Unmodified _GVSIIDGFYKI_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 404.560535 1210.65977 0.2917 0.00011801 -0.80097 -0.00032404 -0.50927 -0.00020603 404.5602229104027 58.599 0.22972 58.109 57.982 58.212 -0.49079 -0.022167 -0.00026091 NaN 17.863 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3286000 + 17709 17404 12279 12490 0.06287140854374229 GVSIIDGFYKI 11 Unmodified _GVSIIDGFYKI_ 0 0 0 REV__ENSG00000066583|ENST00000173527|ISOC1 REV__ENSG00000066583|ENST00000173527|ISOC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 404.560535 1210.65977 0.5131 0.00020758 -0.40852 -0.00016527 0.10458 4.231E-05 404.56044072384304 58.214 0.27908 58.153 57.995 58.274 -0.060719 0.022167 0.00021541 NaN 17.863 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7517600 + 17710 17404 12279 12490 0.06287140854374229 GVSIRYGLLT 10 Unmodified _GVSIRYGLLT_ 0 0 0 REV__ENST00000545314.5_1_1:65696457-65696658:+|nuORF REV__ENST00000545314.5_1_1:65696457-65696658:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2129516601562 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 39.15 1 38.863 38.363 39.363 -0.28687 0 0 0 0.99091 1 20641 20641 0.69767 0 1 + 17711 28646 12280 12491 20873 20873 0.0825400488570267 GVSIYAMLAL 10 Unmodified _GVSIYAMLAL_ 0 0 0 REV__ENSG00000047315|ENST00000314595|POLR2B REV__ENSG00000047315|ENST00000314595|POLR2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7874755859375 2 519.288628 1036.5627 0.038065 1.9767E-05 -0.27804 -0.00014438 -0.23998 -0.00012462 519.2887954528636 43.616 0.17307 43.306 43.207 43.38 -0.31039 11 7 2 0 0 0 0.1502 1 23191 23191 32.305 0 1 8385000 + 17712 17223 12281 12492 20874 20874 0.04588455373709621 GVSKETFLSF 10 Unmodified _GVSKETFLSF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7930908203125 2 557.792589 1113.57063 0.75238 0.00041967 -0.38785 -0.00021634 0.36453 0.00020333 557.7926391983151 55.824 0.61773 49.903 49.474 50.092 -5.9211 74 36 3 0 0 0 0.45406 1 35638 35638 27.629 8.3718 1 52897000 17713 7171 12282 12493 20875 20875 0.018383058948302278 GVSKMRAG 8 Unmodified _GVSKMRAG_ 0 0 0 REV__ENSG00000257093|ENST00000536163|DENND11 REV__ENSG00000257093|ENST00000536163|DENND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 805.849365234375 1 805.434883 804.427607 1.2918 0.0010404 2.4719 0.0019909 3.7637 0.0030314 805.436352325933 99.286 0.080276 93.111 93.048 93.128 -6.1757 6 4 2 0 0 0 0.79887 1 66013 66013 7.2892 2.5332 1 12541000 + 17714 24560 12283 12494 20876 20876 0.017570200226373345 GVSKQDIREQ 10 Unmodified _GVSKQDIREQ_ 0 0 0 ENST00000546093.5_1_16:86580251-86588800:-|nuORF;nc|ENSG00000103248|Q2M296-4|MTHFSD;nc|ENSG00000103248|Q2M296-2|MTHFSD;nc|ENSG00000103248|Q2M296-3|MTHFSD;ENSG00000103248|ENST00000360900|MTHFSD ENST00000546093.5_1_16:86580251-86588800:-|nuORF ENST00000546093.5_1_16:86580251-86588800:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.30810546875 2 580.306926 1158.5993 0.50434 0.00029267 3.9189 0.0022742 4.4232 0.0025668 580.3088073937435 85.88 0.26646 85.378 85.253 85.52 -0.5015 14 10 2 0 0 0 0.69064 1 46997 46997 3.9444 0.66309 1 235360 17715 2117 12284 12495 20877 20877 0.0263442352400034 GVSKRHVRIS 10 Unmodified _GVSKRHVRIS_ 0 0 0 ENSG00000125845|ENST00000378827|BMP2 ENSG00000125845|ENST00000378827|BMP2 ENSG00000125845|ENST00000378827|BMP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3174438476562 2 569.843813 1137.67307 0.12224 6.9657E-05 1.5676 0.00089329 1.6898 0.00096295 569.8448281994939 33.511 0.23737 33.54 33.411 33.648 0.028934 16 10 2 0 0 0 0.23991 1 17666 17666 1.4819 0.79152 1 2662400 17716 3895 12285 12496 20878 20878 0.10974436476999472 GVSKRWSDY 9 Unmodified _GVSKRWSDY_ 0 0 0 ENSG00000146802|ENST00000312814|TMEM168;nc|ENSG00000146802|Q9H0V1-2|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.516845703125 3 366.517329 1096.53016 -0.5708 -0.00020921 1.1385 0.00041728 0.5677 0.00020807 366.51757842988013 17.353 0.061354 17.367 17.35 17.411 0.013865 21 17 2 0 0 0 0.58466 1 8632 8632 1.1933 0.12188 1 481480 17717 5795 12286 12497 20879 20879 -0.01424615704900134 GVSLDDGLAPF 11 Unmodified _GVSLDDGLAPF_ 0 0 0 nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2 nc|ENSG00000187391|Q86UL8-2|MAGI2 nc|ENSG00000187391|Q86UL8-2|MAGI2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3119506835938 2 545.774396 1089.53424 0.54974 0.00030004 0.79119 0.00043181 1.3409 0.00073185 545.7749937012717 60.714 0.14189 60.714 60.646 60.788 0 10 5 2 0 0 0 0.30139 1 33837 33837 5.7319 3.4291 1 472320 17718 9552 12287 12498 20880 20880 -0.006945710018726459 GVSLEVQYLL 10 Unmodified _GVSLEVQYLL_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8147583007812 2 560.816064 1119.61758 1.0244 0.00057449 -0.37075 -0.00020792 0.65364 0.00036657 560.8158553851772 79.429 0.39069 78.94 78.75 79.141 -0.48933 45 16 3 0 0 0 0.16524 1 43442 43442 37.974 1.847 1 8483600 + 17719 19430 12288 12499 20881 20881 0.06255165445986677 GVSLEVQYLL 10 Unmodified _GVSLEVQYLL_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8174438476562 2 560.816064 1119.61758 1.4319 0.00080301 0.53082 0.00029769 1.9627 0.0011007 560.816530087899 96.843 0.35432 90.667 90.523 90.877 -6.1757 53 20 3 0 0 0 0.13391 1 64236 64236 41.84 5.3334 1 81048000 + 17720 19430 12288 12499 20882 20882 0.06255165445986677 GVSLFSSSISS 11 Unmodified _GVSLFSSSISS_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8976135253906 3 357.516995 1069.52915 -0.58238 -0.00020821 2.7672 0.00098934 2.1849 0.00078113 357.51779890462495 18.301 0.043812 18.315 18.296 18.34 0.013865 10 8 2 0 0 0 0.30139 1 9176 9176 1.2148 0 1 280810 17721 912 12289 12500 20883 20883 -0.002828748644560619 GVSLKPLLRI 10 Unmodified _GVSLKPLLRI_ 0 0 0 nc|ENSG00000196689|Q8NER1-3|TRPV1;ENST00000574085.5_1_17:3470111-3495610:-|nuORF nc|ENSG00000196689|Q8NER1-3|TRPV1 nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.8638610839844 3 365.913131 1094.71756 1.5292 0.00055955 -0.028832 -1.055E-05 1.5003 0.000549 365.91309660591446 39.237 0.64815 34.786 34.459 35.107 -4.4509 133 40 4 0 0 0 0.23723 1 23023 23023 6.6304 2.754 1 294030000 17722 15507 12290 12501 20884 20884 0.17399447570460325 GVSLPEILAGE 11 Unmodified _GVSLPEILAGE_ 0 0 0 REV__ENST00000559230.5_1_15:45353218-45365725:+|nuORF REV__ENST00000559230.5_1_15:45353218-45365725:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2008972167969 3 362.201007 1083.58119 0.84613 0.00030647 -0.14806 -5.3627E-05 0.69807 0.00025284 362.2008620108908 26.147 0.32682 23.196 23.078 23.405 -2.9511 30 18 2 0 0 0 0.59689 1 14337 14337 6.2344 0 1 10850000 + 17723 20454 12291 12502 20885 20885 0.04274288549299854 GVSLVRVRGRP 11 Unmodified _GVSLVRVRGRP_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000182578|P07333-2|CSF1R;ENST00000502660.5_1_5:149456698-149465990:-|nuORF ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2513732910156 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 50.487 1 50.438 49.938 50.938 -0.048824 0 0 0 0.93694 1 27302 27302 4.7159 1.6437 1 17724 9068 12292 12503 20886 20886 0.14134698402403956 GVSLWAVSL 9 Unmodified _GVSLWAVSL_ 0 0 0 REV__nc|ENSG00000104852|P08621-4|SNRNP70 REV__nc|ENSG00000104852|P08621-4|SNRNP70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2665405273438 2 466.26601 930.517468 -0.63471 -0.00029595 1.4488 0.00067553 0.81409 0.00037958 466.26655631157496 78.222 0.19157 77.736 77.608 77.799 -0.48596 13 7 2 0 0 0 0.39863 1 42866 42866 12.532 0.89125 1 592530 + 17725 28639 12293 12504 20887 20887 0.049429729028588554 GVSMPPNSYMP 11 Unmodified _GVSMPPNSYMP_ 0 0 0 nc|ENSG00000006377|P56179|DLX6;ENST00000493273.2_1_7:96636558-96639356:+|nuORF;nc|ENSG00000006377|P56179-2|DLX6;ENSG00000006377|ENST00000518156|DLX6 nc|ENSG00000006377|P56179|DLX6 nc|ENSG00000006377|P56179|DLX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8453674316406 3 393.843948 1178.51002 NaN NaN NaN NaN NaN NaN NaN 17.017 1 17.017 16.517 17.517 0 0 0 0 0.94144 1 8349 8349 0.50596 0 1 17726 333 12294 12505 20888 20888 -0.07209870751398739 GVSMTTLNE 9 Unmodified _GVSMTTLNE_ 0 0 0 ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8 ENST00000541225.5_1_17:66883094-66937097:-|nuORF ENST00000541225.5_1_17:66883094-66937097:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2261962890625 2 476.226225 950.437897 -0.19606 -9.3368E-05 -1.1357 -0.00054084 -1.3317 -0.00063421 476.22588161166306 21.768 0.048925 21.768 21.746 21.795 0 10 7 2 0 0 0 0.58865 1 11050 11050 2.0598 0.40713 1 319840 17727 5316 12295 12506 20889 20889 -0.03930461833442678 GVSNLKEI 8 Unmodified _GVSNLKEI_ 0 0 0 REV__ITGB8|p.D172Y|1|0.03|ENSG00000105855|chr7:20379176-20379176|G/T|missense_variant REV__ITGB8|p.D172Y|1|0.03|ENSG00000105855|chr7:20379176-20379176|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2473754882812 2 430.247818 858.481082 -0.41797 -0.00017983 -0.34309 -0.00014761 -0.76106 -0.00032744 430.24757115794205 26.051 0.20033 26.051 25.945 26.145 0 21 9 3 0 0 0 0.18875 1 13383 13383 74.423 10.186 1 3830200 + 17728 18467 12296 12507 20890 20890 0.04618096006140604 GVSNLKEI 8 Unmodified _GVSNLKEI_ 0 0 0 REV__ITGB8|p.D172Y|1|0.03|ENSG00000105855|chr7:20379176-20379176|G/T|missense_variant REV__ITGB8|p.D172Y|1|0.03|ENSG00000105855|chr7:20379176-20379176|G/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 430.247818 858.481082 -0.41797 -0.00017983 -0.34309 -0.00014761 -0.76106 -0.00032744 430.24757115794205 26.051 0.20033 26.051 25.945 26.145 0 0.087376 -9.458E-06 NaN 74.423 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3830200 + 17729 18467 12296 12507 0.04618096006140604 GVSNLQEFRF 10 Unmodified _GVSNLQEFRF_ 0 0 0 ENSG00000006831|ENST00000357103|ADIPOR2 ENSG00000006831|ENST00000357103|ADIPOR2 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8744812011719 3 399.540134 1195.59857 -0.12427 -4.965E-05 1.2987 0.00051889 1.1744 0.00046924 399.54054063073914 16.343 0.20269 16.348 16.292 16.494 0.0050564 24 14 2 0 0 0 0.70951 1 8184 8184 0.77653 0.27058 1 517400 17730 353 12297 12508 20891 20891 0.008596288749231462 GVSPPSASRL 10 Unmodified _GVSPPSASRL_ 0 0 0 ENST00000394236.7_1_3:93646217-93692888:-|nuORF ENST00000394236.7_1_3:93646217-93692888:-|nuORF ENST00000394236.7_1_3:93646217-93692888:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7696838378906 2 485.769448 969.524344 -0.23459 -0.00011396 -0.75955 -0.00036897 -0.99414 -0.00048293 485.76954121328896 29.082 0.25929 29.082 28.963 29.222 0 26 12 3 0 0 0 0.33553 1 15041 15041 25.399 3.6527 1 1748700 17731 12730 12298 12509 20892 20892 0.03836285783427229 GVSPPSASRL 10 Unmodified _GVSPPSASRL_ 0 0 0 ENST00000394236.7_1_3:93646217-93692888:-|nuORF ENST00000394236.7_1_3:93646217-93692888:-|nuORF ENST00000394236.7_1_3:93646217-93692888:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 485.769448 969.524344 0.79883 0.00038805 -1.3611 -0.00066118 -0.56226 -0.00027313 485.76887844382424 32.654 0.32372 28.798 28.601 28.924 -3.8562 -0.14188 -0.00015828 NaN 25.399 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6035600 17732 12730 12298 12509 0.03836285783427229 GVSPTLLVP 9 Unmodified _GVSPTLLVP_ 0 0 0 REV__ENST00000391788.6_1_19:52901139-52901724:+|nuORF REV__ENST00000391788.6_1_19:52901139-52901724:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7689514160156 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 60.585 1 60.096 59.596 60.596 -0.48932 0 0 0 0.84369 1 32994 32994 2.3027 1.5091 1 + 17733 26374 12299 12510 20893 20893 0.07671857045613706 GVSQTLCSPWL 11 Unmodified _GVSQTLCSPWL_ 0 0 0 ENST00000356208.9_1_20:55983238-55983355:+|nuORF ENST00000356208.9_1_20:55983238-55983355:+|nuORF ENST00000356208.9_1_20:55983238-55983355:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.21630859375 3 397.533991 1189.58014 0.83051 0.00033016 -2.1319 -0.0008475 -1.3014 -0.00051734 397.53307644352583 43.539 0.38993 38.774 38.595 38.985 -4.7648 37 24 2 0 0 0 0.30049 1 26586 26586 1.3296 0 1 11705000 17734 12088 12300 12511 20894 20894 -0.007062490912858266 GVSREQFIQH 10 Unmodified _GVSREQFIQH_ 0 0 0 TYW5|p.M20I|1|0.07|ENSG00000162971|chr2:199955411-199955411|C/T|missense_variant TYW5|p.M20I|1|0.07|ENSG00000162971|chr2:199955411-199955411|C/T|missense_variant TYW5|p.M20I|1|0.07|ENSG00000162971|chr2:199955411-199955411|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5401000976562 3 400.875516 1199.60472 NaN NaN NaN NaN NaN NaN NaN 19.499 1 19.499 18.999 19.999 0 0 0 0 0.99248 1 9754 9754 0.62683 0 1 17735 30204 12301 12512 20895 20895 0.01290147106465156 GVSRHGKL 8 Unmodified _GVSRHGKL_ 0 0 0 REV__ENSG00000135069|ENST00000376588|PSAT1 REV__ENSG00000135069|ENST00000376588|PSAT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 427.7536315917969 2 427.253769 852.492984 0.61263 0.00026175 -1.0159 -0.00043407 -0.40331 -0.00017232 427.253427705308 17.498 0.092606 14.911 14.847 14.94 -2.5866 30 23 2 0 0 0 8.7369 1 9126 9126 7.9102 0.62092 1 5990800 + 17736 20035 12302 12513 20896 20896 0.0608375753998871 GVSRHLVVKE 10 Unmodified _GVSRHLVVKE_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5447998046875 3 375.224257 1122.65094 NaN NaN NaN NaN NaN NaN NaN 36.514 1 36.514 36.014 37.014 0 0 0 0 0.81803 1 19375 19375 11.518 3.0736 1 17737 7271 12303 12514 20897 20897 0.09452212008568495 GVSRMTREL 9 Unmodified _GVSRMTREL_ 0 0 0 REV__ENST00000532758.5_1_8:145137633-145138586:+|nuORF REV__ENST00000532758.5_1_8:145137633-145138586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7821044921875 2 524.782033 1047.54951 0.4779 0.00025079 -0.099415 -5.2171E-05 0.37848 0.00019862 524.7818630343236 91.046 0.91963 91.046 90.573 91.493 0 65 47 2 0 0 0 0.55144 1 50496 50496 4.3292 1.7518 1 583500 + 17738 23960 12304 12515 20898 20898 0.02764017314348166 GVSRRHSRPY 10 Unmodified _GVSRRHSRPY_ 0 0 0 ENSG00000122375|ENST00000241891|OPN4;nc|ENSG00000122375|Q9UHM6-2|OPN4 ENSG00000122375|ENST00000241891|OPN4 ENSG00000122375|ENST00000241891|OPN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5564880371094 3 405.554889 1213.64284 NaN NaN NaN NaN NaN NaN NaN 34.021 1 33.829 33.329 34.329 -0.19131 0 0 0 0.99897 1 17758 17758 0.77653 0.078866 1 17739 3632 12305 12516 20899 20899 0.044560778118238886 GVSRRSRPR 9 Unmodified _GVSRRSRPR_ 0 0 0 REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.936767578125 2 535.81813 1069.62171 0.017838 9.5582E-06 -2.9978 -0.0016063 -2.98 -0.0015967 536.3176990799896 85.026 0.14394 78.85 78.749 78.893 -6.1757 9 7 2 0 0 0 0.19613 1 55950 55950 12.532 2.3482 1 7686700 + 17740 28693 12306 12517 20900 20900 0.08968112502930126 GVSSDRFQRL 10 Unmodified _GVSSDRFQRL_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5536499023438 3 388.875516 1163.60472 0.0091424 3.5553E-06 2.1684 0.00084324 2.1776 0.0008468 388.87627064214666 19.07 0.17515 19.077 18.971 19.146 0.0078487 13 8 2 0 0 0 0.23986 1 9678 9678 0.69767 0 1 951270 + 17741 21482 12307 12518 20901 20901 0.029461471064678335 GVSSTDMGFFL 11 Unmodified _GVSSTDMGFFL_ 0 0 0 REV__ENST00000382881.7_1_13:20532931-20593821:+|nuORF REV__ENST00000382881.7_1_13:20532931-20593821:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.5136108398438 3 387.514597 1159.52196 NaN NaN NaN NaN NaN NaN NaN 15.624 1 13.096 12.596 13.596 -2.5273 0 0 0 0.9385 1 8032 8032 1.4551 0.12547 1 + 17742 26350 12308 12519 20902 20902 -0.05141930736544964 GVSSVETFLL 10 Unmodified _GVSSVETFLL_ 0 0 0 REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.788818359375 2 526.28714 1050.55973 0.6549 0.00034467 0.47524 0.00025011 1.1301 0.00059478 526.2870052729941 49.56 0.43104 49.168 48.964 49.395 -0.3923 77 21 5 0 0 0 0.31022 1 26583 26583 26.884 1.4843 1 127480000 + 17743 24783 12309 12520 20903 20903 0.03646903520575506 GVSSVETFLL 10 Unmodified _GVSSVETFLL_ 0 0 0 REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2876586914062 2 526.28714 1050.55973 0.26228 0.00013804 1.2155 0.00063972 1.4778 0.00077775 526.2876599712565 56.104 0.76153 50.127 49.614 50.375 -5.9769 145 44 5 0 0 0 0.1028 2 35651 35651;35788 46.021 4.2037 1 448260000 + 17744 24783 12309 12520 20904;20905 20904 0.03646903520575506 GVSTHSNW 8 Unmodified _GVSTHSNW_ 0 0 0 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 MSMS AL20221201_MKP_PDAC_01 4 444.2039184570312 2 444.203941 886.39333 NaN NaN NaN NaN NaN NaN NaN 26.662 1 23.71 23.21 24.21 -2.9511 0 0 0 0.97348 1 14717 14717 5.7604 0.52976 1 + 17745 20028 12310 12521 20906 20906 -0.05441104864632962 GVSVGKCR 8 Unmodified _GVSVGKCR_ 0 0 0 ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2204895019531 2 403.22108 804.427607 -0.25763 -0.00010388 -0.63136 -0.00025458 -0.88899 -0.00035846 403.2203133135677 30.187 0.61658 30.217 29.84 30.456 0.030106 71 25 4 0 0 0 0.80676 1 15755 15755 2.5775 0.27475 1 5619000 17746 531 12311 12522 20907 20907 0.017570200226259658 GVSVGKCR 8 Unmodified _GVSVGKCR_ 0 0 0 ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 403.22108 804.427607 -0.82343 -0.00033202 -1.7167 -0.0006922 -2.5401 -0.0010242 403.2199747848328 30.348 0.57006 30.348 30.12 30.69 0 0.06557 -0.00034838 NaN 2.5775 65 27 3 NaN NaN NaN NaN 0 NaN NaN 0 3550500 17747 531 12311 12522 0.017570200226259658 GVSVGKCR 8 Unmodified _GVSVGKCR_ 0 0 0 ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B ENSG00000021852|ENST00000371237|C8B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 403.22108 804.427607 -0.25763 -0.00010388 -0.63136 -0.00025458 -0.88899 -0.00035846 403.2203133135677 30.187 0.61658 30.217 29.84 30.456 0.030106 -0.06557 0.00052687 NaN 2.5775 71 25 4 NaN NaN NaN NaN 0 NaN NaN 0 5619000 17748 531 12311 12522 0.017570200226259658 GVSWSPMDDEL 11 Unmodified _GVSWSPMDDEL_ 0 0 0 ENSG00000187231|ENST00000428443|SESTD1;ENST00000489901.1_1_2:179997000-180008522:-|nuORF ENSG00000187231|ENST00000428443|SESTD1 ENSG00000187231|ENST00000428443|SESTD1 MSMS AL20221201_MKP_PDAC_01 4 412.5142517089844 3 412.513144 1234.5176 NaN NaN NaN NaN NaN NaN NaN 26.841 1 23.805 23.305 24.305 -3.0365 0 0 0 0.93893 1 14829 14829 1.3296 0.31607 1 17749 9545 12312 12523 20908 20908 -0.09027439950114058 GVSYEETTI 9 Unmodified _GVSYEETTI_ 0 0 0 nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7383728027344 2 499.73748 997.460406 NaN NaN NaN NaN NaN NaN NaN 21.061 1 21.061 20.561 21.561 0 0 0 0 0.7243 1 10632 10632 8.5933 0 1 17750 2520 12313 12524 20909 20909 -0.038425391641794704 GVSYGLTPRL 10 Unmodified _GVSYGLTPRL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.2571411132812 2 531.800749 1061.58694 0.92773 0.00049337 -0.098542 -5.2405E-05 0.82919 0.00044096 531.8009454983775 52.641 0.10144 46.906 46.874 46.976 -5.7345 6 5 2 0 0 0 0.22667 1 33217 33217 15.847 1.0089 1 17253000 17751 4696 12314 12525 20910 20910 0.058614318515992636 GVTCSFFGGF 10 Unmodified _GVTCSFFGGF_ 0 0 0 REV__ENSG00000197629|ENST00000361050|MPEG1 REV__ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2255859375 2 511.226028 1020.4375 0.85355 0.00043636 -0.018095 -9.2507E-06 0.83545 0.00042711 511.225912991978 48.442 0.36008 43.208 42.973 43.333 -5.2339 35 21 2 0 0 0 0.60623 1 30247 30247 10.824 2.9138 1 22474000 + 17752 23949 12315 12526 20911 20911 -0.07189836762631785 GVTDRQCLTY 10 Unmodified _GVTDRQCLTY_ 0 0 0 REV__ENSG00000154415|ENST00000284601|PPP1R3A REV__ENSG00000154415|ENST00000284601|PPP1R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2776489257812 2 578.27678 1154.53901 0.82237 0.00047556 0.94526 0.00054662 1.7676 0.0010222 578.2770338881986 66.165 0.48734 59.989 59.758 60.245 -6.1757 48 27 2 0 0 0 0.63399 1 43048 43048 9.3831 1.473 1 23224000 + 17753 21229 12316 12527 20912 20912 -0.03208010130742878 GVTEEPQRLF 10 Unmodified _GVTEEPQRLF_ 0 0 0 nc|ENSG00000104081|Q96LC9-3|BMF;nc|ENSG00000104081|Q96LC9-2|BMF;ENSG00000104081|ENST00000354670|BMF nc|ENSG00000104081|Q96LC9-3|BMF nc|ENSG00000104081|Q96LC9-3|BMF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8743896484375 3 392.540022 1174.59824 NaN NaN NaN NaN NaN NaN NaN 28.016 1 28.046 27.546 28.546 0.029564 0 0 0 0.98914 1 14575 14575 0.77653 0 1 17754 2176 12317 12528 20913 20913 0.01792209155087221 GVTFPKSNVF 10 Unmodified _GVTFPKSNVF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2014770507812 3 365.865958 1094.57605 -0.43119 -0.00015776 1.4173 0.00051854 0.98612 0.00036079 365.8660251548942 25.137 0.26336 25.137 25.02 25.283 0 23 13 2 0 0 0 0.69064 1 12872 12872 1.9064 0 1 967160 17755 9967 12318 12529 20914 20914 0.03254029477329823 GVTFSEAFSPI 11 Unmodified _GVTFSEAFSPI_ 0 0 0 REV__ENST00000548329.1_1_12:111389517-111395458:-|nuORF REV__ENST00000548329.1_1_12:111389517-111395458:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5298767089844 3 385.529123 1153.56554 -0.26723 -0.00010303 1.494 0.00057596 1.2267 0.00047294 385.5296720225893 34.673 0.30008 34.482 34.331 34.631 -0.19132 21 13 2 0 0 0 0.68427 1 18178 18178 2.6312 0 1 3463800 + 17756 28684 12319 12530 20915 20915 -0.0050999796776523 GVTFTSAK 8 Unmodified _GVTFTSAK_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.261962890625 2 405.721436 809.428318 NaN NaN NaN NaN NaN NaN NaN 48.229 1 48.19 47.69 48.69 -0.038643 0 0 0 0.97444 1 26009 26009 2.5775 0.27475 1 17757 8551 12320 12531 20916 20916 0.015981379433242182 GVTGLFPGNY 10 Unmodified _GVTGLFPGNY_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7613525390625 2 512.758549 1023.50255 0.90345 0.00046325 -0.21912 -0.00011236 0.68433 0.0003509 512.7596145051245 48.47 0.43295 43.108 42.86 43.293 -5.3617 47 25 3 0 0 0 0.2178 1 30110 30110 32.305 8.2849 1 53536000 17758 13392 12321 12532 20917 20917 -0.008265189651410765 GVTHFGQR 8 Unmodified _GVTHFGQR_ 0 0 0 REV__ENST00000486040.1_1_7:2278405-2281804:-|nuORF REV__ENST00000486040.1_1_7:2278405-2281804:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.23681640625 2 451.235576 900.456599 NaN NaN NaN NaN NaN NaN NaN 19.559 1 19.559 19.059 20.059 0 0 0 0 0.97444 1 9789 9789 0.79363 0 1 + 17759 19353 12322 12533 20918 20918 0.0023888064329185 GVTHICPVY 9 Carbamidomethyl (C) _GVTHIC(Carbamidomethyl (C))PVY_ GVTHIC(1)PVY GVTHIC(71)PVY 0 1 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.260498046875 2 523.260402 1044.50625 0.68376 0.00035779 -0.37798 -0.00019778 0.30579 0.00016001 523.2601075984941 44.606 0.41985 39.754 39.528 39.948 -4.852 81 33 3 0 0 0 0.013472 2 27267 27145;27267 70.716 45.316 1 47548000 17760 5009 12323 12534 20919;20920 20920 517 -0.014221724629351229 GVTHRESI 8 Unmodified _GVTHRESI_ 0 0 0 ENST00000492140.1_1_1:120050081-120054424:+|nuORF;nc|ENSG00000203859|P26439-2|HSD3B2;ENST00000434856.1_1_1:120144028-120151554:+|nuORF;ENSG00000203859|ENST00000369416|HSD3B2;ENSG00000203857|ENST00000369413|HSD3B1 ENST00000492140.1_1_1:120050081-120054424:+|nuORF ENST00000492140.1_1_1:120050081-120054424:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7403869628906 2 449.740691 897.466829 -0.060738 -2.7317E-05 -0.09878 -4.4425E-05 -0.15952 -7.1742E-05 449.740559844729 21.807 0.20701 21.807 21.694 21.901 0 45 34 2 0 0 0 0.70294 1 11023 11023 16.942 2.104 1 1047300 17761 10227 12324 12535 20921 20921 0.013994435778499792 GVTHTVPIY 9 Unmodified _GVTHTVPIY_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7690734863281 2 493.768917 985.523281 0.13447 6.6396E-05 0.6222 0.00030722 0.75667 0.00037362 493.76912856816443 39.816 0.27067 39.816 39.681 39.952 0 34 13 3 0 0 0 0.0094915 1 21359 21359 81.864 37.457 1 8422000 17762 1163;9641;9849;15509 12325 12536 20922 20922 0.0299407141451411 GVTHTVPIY 9 Unmodified _GVTHTVPIY_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7688598632812 2 493.768917 985.523281 0.48909 0.0002415 -1.1726 -0.00057898 -0.68348 -0.00033748 493.76868737512217 40.103 0.31742 39.806 39.69 40.008 -0.29716 21 14 2 0 0 0 0.0094915 1 21186 21186 81.864 37.457 1 3946900 17763 1163;9641;9849;15509 12325 12536 20923 20923 0.0299407141451411 GVTIEVQEA 9 Unmodified _GVTIEVQEA_ 0 0 0 REV__ENSG00000261150|ENST00000615648|EPPK1 REV__ENSG00000261150|ENST00000615648|EPPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2491760253906 2 473.248015 944.481476 NaN NaN NaN NaN NaN NaN NaN 32.654 1 32.683 32.183 33.183 0.029743 0 0 0 0.84564 1 17151 17151 2.0598 0 1 + 17764 24580 12326 12537 20924 20924 0.007014709353370563 GVTIGLLVH 9 Unmodified _GVTIGLLVH_ 0 0 0 ENSG00000185873|ENST00000332644|TMPRSS11B ENSG00000185873|ENST00000332644|TMPRSS11B ENSG00000185873|ENST00000332644|TMPRSS11B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7800598144531 2 454.781828 907.549102 NaN NaN NaN NaN NaN NaN NaN 33.832 1 33.861 33.361 34.361 0.028934 0 0 0 0.84564 1 17814 17814 2.0598 0 1 17765 9421 12327 12538 20925 20925 0.0916296565679886 GVTIVLFVSS 10 Unmodified _GVTIVLFVSS_ 0 0 0 ENST00000604273.1_2_1:145515521-145515950:-|nuORF;ENST00000312753.9_2_1:145510914-145515950:-|nuORF ENST00000604273.1_2_1:145515521-145515950:-|nuORF ENST00000604273.1_2_1:145515521-145515950:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.300048828125 2 511.30005 1020.58555 NaN NaN NaN NaN NaN NaN NaN 96.642 1 96.642 96.142 97.142 0 0 0 0 0.97302 1 53408 53408 3.5965 0 1 17766 11703 12328 12539 20926 20926 0.07607797762852897 GVTKYELHF 9 Unmodified _GVTKYELHF_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2;REV__ENST00000523387.5_1_8:2986336-3141840:-|nuORF REV__ENSG00000121904|ENST00000373381|CSMD2 MSMS AL20221201_MKP_PDAC_01 4 547.2885131835938 2 547.287474 1092.5604 NaN NaN NaN NaN NaN NaN NaN 18.907 1 16.286 15.786 16.786 -2.6215 0 0 0 0.82739 1 9985 9985 4.3292 0.73274 1 + 17767 19319;23323 12329 12540 20927 20927 0.01781742960270094 GVTLAGKQ 8 Unmodified _GVTLAGKQ_ 0 0 0 ENST00000482065.1_2:110656182-110661085:+|nuORF;ENST00000474038.1_1_2:109271407-109276316:+|nuORF ENST00000482065.1_2:110656182-110661085:+|nuORF ENST00000482065.1_2:110656182-110661085:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2297058105469 2 387.229428 772.444303 -0.53749 -0.00020813 0.64306 0.00024901 0.10557 4.0879E-05 387.2296848404001 18.748 0.16859 18.748 18.692 18.86 0 25 12 3 0 0 0 0.80232 1 9341 9341 5.2307 0 1 612280 17768 13930 12330 12541 20928 20928 0.048978441802432826 GVTLELLF 8 Unmodified _GVTLELLF_ 0 0 0 ENST00000288050.8_1_16:70190827-70190911:+|nuORF ENST00000288050.8_1_16:70190827-70190911:+|nuORF ENST00000288050.8_1_16:70190827-70190911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2633361816406 2 446.262936 890.51132 1.2974 0.00057898 0.50258 0.00022429 1.8 0.00080326 446.26292388816603 87.713 0.53822 81.537 81.312 81.85 -6.1757 45 29 2 0 0 0 0.50586 1 57959 57959 34.187 2.0704 1 13779000 17769 11451 12331 12542 20929 20929 0.061684546713422606 GVTLEYNP 8 Unmodified _GVTLEYNP_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 892.4365844726562 1 892.441074 891.433798 0.067561 6.0294E-05 -2.0179 -0.0018009 -1.9504 -0.0017406 892.4386452021386 39.665 0.084251 39.665 39.616 39.7 0 6 3 2 0 0 0 0.80232 1 21277 21277 5.2307 0.90143 1 728670 17770 878 12332 12543 20930 20930 -0.016261832648524432 GVTLPGQPPL 10 Unmodified _GVTLPGQPPL_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2523193359375 2 489.784567 977.554582 0.17151 8.4002E-05 -0.92096 -0.00045107 -0.74945 -0.00036707 489.7843462988027 64.238 0.34912 64.238 64.1 64.45 0 20 15 2 0 0 0 0.23117 1 35820 35820 11.64 3.7301 1 764690 17771 4799 12333 12544 20931 20931 0.06490644448604144 GVTLWELFEF 10 Unmodified _GVTLWELFEF_ 0 0 0 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2146606445312 3 414.213135 1239.61758 -0.21585 -8.9409E-05 -0.92414 -0.00038279 -1.14 -0.0004722 414.2125027610403 30.268 0.32217 30.298 30.091 30.413 0.030104 17 13 2 0 0 0 0.70734 1 15801 15801 2.086 1.3095 1 796490 17772 5405 12334 12545 20932 20932 0.007351654459853307 GVTQKASAPTY 11 Unmodified _GVTQKASAPTY_ 0 0 0 ENSG00000255192|ENST00000528386|NANOGP8;ENSG00000111704|ENST00000229307|NANOG ENSG00000255192|ENST00000528386|NANOGP8 ENSG00000255192|ENST00000528386|NANOGP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.794189453125 2 561.793121 1121.57169 1.1784 0.00066203 1.2967 0.00072849 2.4751 0.0013905 561.7941068064955 35.013 0.34123 30.918 30.7 31.041 -4.0951 28 19 2 0 0 0 0.16973 1 20282 20282 34.402 0 1 8474000 17773 2818 12335 12546 20933 20933 0.0157652026375672 GVTQKASAPTY 11 Unmodified _GVTQKASAPTY_ 0 0 0 ENSG00000255192|ENST00000528386|NANOGP8;ENSG00000111704|ENST00000229307|NANOG ENSG00000255192|ENST00000528386|NANOGP8 ENSG00000255192|ENST00000528386|NANOGP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.793121 1121.57169 -0.15033 -8.4455E-05 -0.46512 -0.0002613 -0.61546 -0.00034576 561.7928804417021 30.827 0.22236 30.827 30.67 30.892 0 -0.045671 -0.0012592 NaN 34.402 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2983400 17774 2818 12335 12546 0.0157652026375672 GVTQQVTHKV 10 Unmodified _GVTQQVTHKV_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5422058105469 3 366.208495 1095.60366 -0.01536 -5.6248E-06 0.53372 0.00019545 0.51836 0.00018983 366.208881832563 2.4653 0.017284 2.4482 2.433 2.4503 -0.017019 8 6 2 0 0 0 0.71123 1 1254 1254 0.69767 0.24315 1 254160 17775 6171 12336 12547 20934 20934 0.059679327375761204 GVTQSQIREF 10 Unmodified _GVTQSQIREF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__nc|ENSG00000155657|Q8WZ42-6|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5369873046875 3 388.871772 1163.59349 NaN NaN NaN NaN NaN NaN NaN 17.724 1 17.724 17.224 18.224 0 0 0 0 0.98914 1 8757 8757 0.77653 0 1 + 17776 21279;29718 12337 12548 20935 20935 0.018233250123103062 GVTRRQRLWD 10 Unmodified _GVTRRQRLWD_ 0 0 0 REV__nc|ENSG00000184347|O75094-2|SLIT3 REV__nc|ENSG00000184347|O75094-2|SLIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8600463867188 2 643.857452 1285.70035 1.1306 0.00072797 1.948 0.0012542 3.0786 0.0019822 643.8591811603129 100.56 0.10294 100.52 100.48 100.58 -0.04216 8 3 3 0 0 0 0.65282 1 55889 55889 8.1555 0 1 6196900 + 17777 23414 12338 12549 20936 20936 0.06892920017367032 GVTTLLSHNL 10 Unmodified _GVTTLLSHNL_ 0 0 0 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3129272460938 2 527.798206 1053.58186 -0.17673 -9.328E-05 2.4281 0.0012815 2.2513 0.0011883 527.7984028975266 53.997 0.62421 53.931 53.637 54.262 -0.066936 82 33 4 0 0 0 0.63399 1 29401 29401 9.3831 0.78985 1 90816000 + 17778 19041 12339 12550 20937 20937 0.057211279889770594 GVTTWESP 8 Unmodified _GVTTWESP_ 0 0 0 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;ENST00000527678.1_1_17:43482043-43510162:-|nuORF;ENST00000529357.5_1_17:43475293-43487738:-|nuORF nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7081909179688 2 438.708525 875.402498 -0.42326 -0.00018569 0.6218 0.00027279 0.19854 8.7101E-05 438.7087262554905 34.559 0.23282 34.559 34.442 34.675 0 16 11 2 0 0 0 0.67481 1 18217 18217 19.439 0 1 1072900 17779 6645 12340 12551 20938 20938 -0.040187562989444814 GVTVPEWRLL 10 Unmodified _GVTVPEWRLL_ 0 0 0 REV__ENST00000542802.7_1_17:76793816-76794501:-|nuORF REV__ENST00000542802.7_1_17:76793816-76794501:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3373413085938 2 585.337498 1168.66044 0.43505 0.00025465 0.41217 0.00024126 0.84722 0.00049591 585.3378953499055 76.776 0.31215 76.826 76.698 77.01 0.05011 22 12 3 0 0 0 0.60623 1 42396 42396 10.824 0.75 1 1650400 + 17780 28625 12341 12552 20939 20939 0.08285980294090223 GVTVYSYLY 9 Unmodified _GVTVYSYLY_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1;REV__ENSG00000165349|ENST00000374299|SLC7A3 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7686767578125 2 532.768583 1063.52261 -0.067424 -3.5921E-05 -0.020047 -1.068E-05 -0.087471 -4.6602E-05 532.7686447826229 23.37 0.63338 23.37 22.955 23.588 0 88 31 4 0 0 0 0.53666 1 11759 11759 5.2307 0.47466 1 7874500 + 17781 20412;22006 12342 12553 20940 20940 -0.006607680251818238 GVTVYTYLY 9 Unmodified _GVTVYTYLY_ 0 0 0 REV__ENSG00000003989|ENST00000494857|SLC7A2 REV__ENSG00000003989|ENST00000494857|SLC7A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7724609375 2 539.776408 1077.53826 NaN NaN NaN NaN NaN NaN NaN 20.814 1 20.814 20.314 21.314 0 0 0 0 0.82396 1 10491 10491 4.756 0.42677 1 + 17782 16941 12343 12554 20941 20941 0.0025951849186185427 GVTWRCDPRI 10 Unmodified _GVTWRCDPRI_ 0 0 0 REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.5411682128906 3 401.54148 1201.60261 NaN NaN NaN NaN NaN NaN NaN 23.293 1 20.514 20.014 21.014 -2.7784 0 0 0 0.96981 1 12599 12599 1.9064 0.1641 1 + 17783 25058 12344 12555 20942 20942 0.009873950970131773 GVTYETHPMY 10 Unmodified _GVTYETHPMY_ 0 0 0 ENSG00000144410|ENST00000272852|CPO ENSG00000144410|ENST00000272852|CPO ENSG00000144410|ENST00000272852|CPO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2645263671875 2 599.265881 1196.51721 NaN NaN NaN NaN NaN NaN NaN 63.686 1 63.199 62.699 63.699 -0.48617 0 0 0 0.96981 1 34735 34735 3.9444 1.3669 1 17784 5607 12345 12556 20943 20943 -0.0731881487931787 GVTYRLTH 8 Unmodified _GVTYRLTH_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7592468261719 2 473.758884 945.503215 0.051711 2.4499E-05 -0.015806 -7.4882E-06 0.035905 1.701E-05 473.7586557965303 20.287 0.14494 20.298 20.208 20.353 0.010553 12 8 2 0 0 0 0.77186 1 10337 10337 10.824 0.75 1 928800 17785 8195 12346 12557 20944 20944 0.028283204745548574 GVVAHTGRQEL 11 Unmodified _GVVAHTGRQEL_ 0 0 0 REV__ENSG00000111671|ENST00000524270|SPSB2 REV__ENSG00000111671|ENST00000524270|SPSB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5469360351562 3 389.5474 1165.62037 NaN NaN NaN NaN NaN NaN NaN 15.294 1 15.294 14.794 15.794 0 0 0 0 0.93933 1 7355 7355 1.2148 0.25256 1 + 17786 18765 12347 12558 20945 20945 0.04418433623527562 GVVAQARPVR 10 Unmodified _GVVAQARPVR_ 0 0 0 REV__nc|ENSG00000143297|Q96RD9-3|FCRL5 REV__nc|ENSG00000143297|Q96RD9-3|FCRL5 MSMS AL20221201_MKP_PDAC_01 4 526.8206787109375 2 526.819807 1051.62506 NaN NaN NaN NaN NaN NaN NaN 104.52 1 98.344 97.844 98.844 -6.1757 0 0 0 0.99008 1 69991 69991 3.5965 1.5367 1 + 17787 20619 12348 12559 20946 20946 0.10131362556944623 GVVARLLAL 9 Unmodified _GVVARLLAL_ 0 0 0 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7689514160156 2 456.30547 910.596387 1.3876 0.00063318 2.13 0.00097195 3.5176 0.0016051 456.3063399808587 71.157 0.23339 71.196 71.089 71.323 0.039024 15 9 2 0 0 0 0.19891 1 39204 39204 7.2892 2.5332 1 834550 17788 2610 12349 12560 20947 20947 0.13751244927777861 GVVARTPAGT 10 Unmodified _GVVARTPAGT_ 0 0 0 ENST00000559125.1_1_15:89010930-89011256:+|nuORF;nc|ENSG00000181991|P82912-2|MRPS11 ENST00000559125.1_1_15:89010930-89011256:+|nuORF ENST00000559125.1_1_15:89010930-89011256:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.7648010253906 2 464.764166 927.513779 NaN NaN NaN NaN NaN NaN NaN 33.887 1 29.901 29.401 30.401 -3.9853 0 0 0 0.37462 1 19478 19478 32.786 2.0822 1 17789 15291 12350 12561 20948 20948 0.047123031289856954 GVVCLNLKH 9 Unmodified _GVVCLNLKH_ 0 0 0 REV__TIGD2|p.L220V|1|0.17|ENSG00000180346|chr4:89113632-89113632|T/G|missense_variant REV__TIGD2|p.L220V|1|0.17|ENSG00000180346|chr4:89113632-89113632|T/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.778564453125 2 491.778762 981.542971 0.8303 0.00040832 -0.89773 -0.00044148 -0.067429 -3.316E-05 491.7782233106142 69.071 0.36535 69.102 68.93 69.295 0.030914 56 17 4 0 0 0 0.5029 1 37979 37979 7.2892 2.0586 1 21446000 + 17790 23150 12351 12562 20949 20949 0.05146124153623077 GVVDLQLSDTF 11 Unmodified _GVVDLQLSDTF_ 0 0 0 REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF REV__ENST00000551558.1_1_12:77439797-77459307:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5397033691406 3 398.539799 1192.59757 NaN NaN NaN NaN NaN NaN NaN 17.868 1 17.882 17.382 18.382 0.013865 0 0 0 0.94165 1 8918 8918 0.45452 0 1 + 17791 22059 12352 12563 20950 20950 0.008973697153578541 GVVFGRGL 8 Unmodified _GVVFGRGL_ 0 0 0 ENST00000339083.11_2_1:113243771-113243864:-|nuORF ENST00000339083.11_2_1:113243771-113243864:-|nuORF ENST00000339083.11_2_1:113243771-113243864:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.7409057617188 2 402.739963 803.465373 NaN NaN NaN NaN NaN NaN NaN 15.231 1 15.231 14.731 15.731 0 0 0 0 0.97444 1 7317 7317 2.8892 0 1 17792 11947 12353 12564 20951 20951 0.05577854279761141 GVVGVSSV 8 Unmodified _GVVGVSSV_ 0 0 0 REV__nc|ENSG00000113790|Q08426-2|EHHADH REV__nc|ENSG00000113790|Q08426-2|EHHADH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8858337402344 2 352.202879 702.391205 0.026195 9.2259E-06 2.065 0.00072731 2.0912 0.00073653 352.20306203985507 28.539 0.32962 28.569 28.377 28.706 0.029564 19 12 2 0 0 0 8.7369 1 14768 14768 6.3541 3.4649 1 1210200 + 17793 18889 12354 12565 20952 20952 0.028104663975682342 GVVHHEKETF 10 Unmodified _GVVHHEKETF_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8684997558594 3 394.86825 1181.58292 NaN NaN NaN NaN NaN NaN NaN 15.665 1 15.665 15.165 16.165 0 0 0 0 0.98914 1 7566 7566 0.77653 0 1 17794 5637 12355 12566 20953 20953 -0.0006065764212053182 GVVHHEKETF 10 Unmodified _GVVHHEKETF_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8691711425781 3 394.86825 1181.58292 NaN NaN NaN NaN NaN NaN NaN 16.123 1 16.124 15.624 16.624 0.0010548 0 0 0 0.98914 1 7943 7943 0.77653 0 1 17795 5637 12355 12566 20954 20954 -0.0006065764212053182 GVVHHEKETF 10 Unmodified _GVVHHEKETF_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8659973144531 3 394.86825 1181.58292 -0.087211 -3.4437E-05 1.1026 0.00043536 1.0153 0.00040093 394.86858033730607 15.73 0.2768 15.735 15.643 15.92 0.0057774 53 23 3 0 0 0 0.70951 1 7822 7822 0.77653 0.27058 1 1117500 17796 5637 12355 12566 20955 20955 -0.0006065764212053182 GVVHHLVG 8 Unmodified _GVVHHLVG_ 0 0 0 ENST00000380834.6_1_2:25042707-25042860:+|nuORF ENST00000380834.6_1_2:25042707-25042860:+|nuORF ENST00000380834.6_1_2:25042707-25042860:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2378234863281 2 409.237587 816.460622 NaN NaN NaN NaN NaN NaN NaN 20.307 1 20.317 19.817 20.817 0.010553 0 0 0 0.97444 1 10353 10353 2.8892 0 1 17797 12608 12356 12567 20956 20956 0.045049701369862305 GVVHRGVP 8 Unmodified _GVVHRGVP_ 0 0 0 REV__nc|ENSG00000134644|Q14671-4|PUM1 REV__nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.7432861328125 2 410.743037 819.471521 0.61376 0.0002521 0.68248 0.00028032 1.2962 0.00053242 410.743438569514 30.335 0.20583 30.254 30.153 30.359 -0.080431 12 7 2 0 0 0 0.80143 1 15789 15789 5.7604 0.52976 1 1089000 + 17798 29642 12357 12568 20957 20957 0.05456372511275731 GVVKGFKFF 9 Unmodified _GVVKGFKFF_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7991333007812 2 514.80002 1027.58549 0.20758 0.00010686 -2.6983 -0.0013891 -2.4907 -0.0012822 514.7989338853987 34.958 0.28342 34.985 34.818 35.102 0.027401 18 12 2 0 0 0 0.58865 1 18474 18474 2.0598 0.21551 1 1756500 17799 443;15632 12358 12569 20958 20958 0.07279842553521121 GVVKGFKFF 9 Unmodified _GVVKGFKFF_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.80002 1027.58549 0.20758 0.00010686 -2.6983 -0.0013891 -2.4907 -0.0012822 514.7989338853987 34.958 0.28342 34.985 34.818 35.102 0.027401 0 0 NaN 2.0598 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1756500 17800 443;15632 12358 12569 0.07279842553521121 GVVKLFCPVRN 11 Unmodified _GVVKLFCPVRN_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2377624511719 3 411.237509 1230.6907 0.14097 5.7972E-05 0.33367 0.00013722 0.47464 0.00019519 411.2376001283688 39.812 0.62519 39.817 39.483 40.108 0.0050545 71 29 3 0 0 0 0.73115 1 21294 21294 0.45452 0 1 4740300 17801 16347 12359 12570 20959 20959 0.08458015687642728 GVVLDFLEE 9 Unmodified _GVVLDFLEE_ 0 0 0 ENST00000511359.1_1_5:23303923-23304922:-|nuORF ENST00000511359.1_1_5:23303923-23304922:-|nuORF ENST00000511359.1_1_5:23303923-23304922:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.764892578125 2 510.76604 1019.51753 0.34811 0.0001778 -2.3407 -0.0011955 -1.9926 -0.0010177 510.76462477653877 17.847 0.075943 17.852 17.809 17.885 0.0050564 6 4 2 0 0 0 0.58865 1 9025 9025 2.0598 0.21551 1 432360 17802 14607 12360 12571 20960 20960 0.008549281121986496 GVVLNIIR 8 Unmodified _GVVLNIIR_ 0 0 0 REV__ENST00000474074.1_1_7:86828277-86848819:-|nuORF REV__ENST00000474074.1_1_7:86828277-86848819:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7882080078125 2 442.28982 882.565087 0.2969 0.00013132 -0.74494 -0.00032948 -0.44804 -0.00019816 442.28936088843705 35.083 0.19095 35.11 34.973 35.164 0.027401 12 8 2 0 0 0 8.7369 1 18520 18520 0.69038 0 1 1603200 + 17803 20042 12361 12572 20961 20961 0.11910671893690505 GVVLYDDSPR 10 Unmodified _GVVLYDDSPR_ 0 0 0 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.785400390625 2 560.785296 1119.55604 NaN NaN NaN NaN NaN NaN NaN 16.116 1 16.116 15.616 16.616 0 0 0 0 0.99091 1 7830 7830 1.6526 0 1 + 17804 17885 12362 12573 20962 20962 0.0010423374669699115 GVVNKYAVSL 10 Unmodified _GVVNKYAVSL_ 0 0 0 REV__nc|ENSG00000166913|P31946-2|YWHAB REV__nc|ENSG00000166913|P31946-2|YWHAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.3032836914062 2 525.303124 1048.5917 0.1857 9.755E-05 -0.27313 -0.00014348 -0.087427 -4.5926E-05 525.3029484303662 59.786 0.29729 59.295 59.132 59.429 -0.49079 36 14 3 0 0 0 0.44373 1 32599 32599 19.257 3.1079 1 12965000 + 17805 19603 12363 12574 20963 20963 0.06934315994362805 GVVPASVT 8 Unmodified _GVVPASVT_ 0 0 0 ENST00000313064.2_1_2:232378846-232379035:-|nuORF ENST00000313064.2_1_2:232378846-232379035:-|nuORF ENST00000313064.2_1_2:232378846-232379035:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2115783691406 2 365.210704 728.406855 NaN NaN NaN NaN NaN NaN NaN 35.505 1 35.282 34.782 35.782 -0.2224 0 0 0 0.97348 1 18596 18596 5.7604 0 1 17806 11708 12364 12575 20964 20964 0.03178752914618599 GVVRAPLL 8 Unmodified _GVVRAPLL_ 0 0 0 ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2364807128906 2 412.771263 823.527973 0.17678 7.297E-05 -0.2065 -8.5237E-05 -0.029719 -1.2267E-05 412.77122833918366 54.817 0.23854 54.75 54.622 54.861 -0.066936 25 11 3 0 0 0 8.7369 1 29726 29726 14.582 8.8213 1 2959100 17807 14884 12365 12576 20965 20965 0.1091500034793853 GVVRAPLL 8 Unmodified _GVVRAPLL_ 0 0 0 ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 412.771263 823.527973 0.30788 0.00012709 0.6429 0.00026537 0.95079 0.00039246 412.77157393088606 55.127 0.24876 54.649 54.548 54.796 -0.47798 -0.05061 0.00050504 NaN 14.582 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 640190 17808 14884 12365 12576 0.1091500034793853 GVVRAPLLR 9 Unmodified _GVVRAPLLR_ 0 0 0 ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF ENST00000529988.5_1_11:118992559-118992682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8227233886719 2 490.821818 979.629084 0.14981 7.3532E-05 0.93302 0.00045795 1.0828 0.00053148 490.82217991818226 37.282 0.18059 37.303 37.195 37.375 0.021545 11 7 2 0 0 0 0.5029 1 19797 19797 7.2892 2.96 1 1144700 17809 14884 12366 12577 20966 20966 0.1384545205064569 GVVRNPLW 8 Unmodified _GVVRNPLW_ 0 0 0 nc|ENSG00000187848|Q9UBL9-4|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7715148925781 2 470.771794 939.529036 -0.23106 -0.00010878 0.84591 0.00039823 0.61485 0.00028946 470.7723143385649 35.798 0.2888 35.823 35.702 35.99 0.024971 22 13 2 0 0 0 0.80676 1 18929 18929 2.5775 0.27475 1 14423000 17810 16466 12367 12578 20967 20967 0.056852147168342526 GVVRQVEL 8 Unmodified _GVVRQVEL_ 0 0 0 REV__ENSG00000224470|ENST00000427980|ATXN1L REV__ENSG00000224470|ENST00000427980|ATXN1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2687377929688 2 450.269084 898.523616 0.4624 0.00020821 -0.095471 -4.2988E-05 0.36693 0.00016522 450.26896708126833 38.144 0.21395 38.161 38.025 38.239 0.01704 19 9 3 0 0 0 0.5284 1 20258 20258 32.117 1.8922 1 2505900 + 17811 24380 12368 12579 20968 20968 0.07029491134380805 GVVSAIVVVAY 11 Unmodified _GVVSAIVVVAY_ 0 0 0 REV__nc|ENSG00000148053|Q16620-6|NTRK2 REV__nc|ENSG00000148053|Q16620-6|NTRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8204956054688 2 538.82115 1075.62775 -0.44937 -0.00024213 0.47984 0.00025855 0.030468 1.6417E-05 538.8215093866086 61.095 0.28107 60.606 60.475 60.756 -0.48932 31 13 3 0 0 0 0.65108 1 33348 33348 8.7454 0 1 8859100 + 17812 20923 12369 12580 20969 20969 0.09295773171243127 GVVTFLQIVGV 11 Unmodified _GVVTFLQIVGV_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8986206054688 3 377.897258 1130.66995 0.021449 8.1054E-06 3.3847 0.0012791 3.4061 0.0012872 377.89823985729953 34.825 0.43086 34.852 34.733 35.164 0.027401 39 19 3 0 0 0 0.73114 1 18361 18361 1.3296 0.55311 1 3358500 17813 2527 12370 12581 20970 20970 0.1098374857961062 GVVTGAAANEQ 11 Unmodified _GVVTGAAANEQ_ 0 0 0 REV__nc|ENSG00000140937|P55287-2|CDH11 REV__nc|ENSG00000140937|P55287-2|CDH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7551879882812 2 508.753995 1015.49344 NaN NaN NaN NaN NaN NaN NaN 18.345 1 18.345 17.845 18.845 0 0 0 0 0.94165 1 9113 9113 1.3295 0.13619 1 + 17814 16766 12371 12582 20971 20971 -0.013689123214930987 GVVVIVDPGV 10 Unmodified _GVVVIVDPGV_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000478105.5_1_21:47981571-47987532:+|nuORF nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2869873046875 2 477.286943 952.559333 0.40148 0.00019162 -0.97568 -0.00046568 -0.5742 -0.00027406 477.2861990000944 52.826 0.21795 52.826 52.702 52.92 0 14 9 2 0 0 0 0.60623 1 29268 29268 10.824 0 1 2203100 17815 6717 12372 12583 20972 20972 0.08115528591372367 GVVYDQEKKTF 11 Unmodified _GVVYDQEKKTF_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.5652465820312 3 438.562715 1312.66632 0.29464 0.00012922 2.3323 0.0010229 2.6269 0.0011521 438.5635591506651 14.526 0.15068 12.023 11.933 12.084 -2.5029 38 25 2 0 0 0 0.70701 1 7359 7359 1.4551 0.94916 1 3270400 17816 3755 12373 12584 20973 20973 0.022490340150625343 GVWACFLGGGM 11 Unmodified _GVWACFLGGGM_ 0 0 0 REV__ENSG00000105370|ENST00000596399|LIM2 REV__ENSG00000105370|ENST00000596399|LIM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5001831054688 3 366.501746 1096.48341 NaN NaN NaN NaN NaN NaN NaN 21.193 1 21.193 20.693 21.693 0 0 0 0 0.94144 1 10707 10707 0.50596 0.047615 1 + 17817 18419 12374 12585 20974 20974 -0.060975148520356015 GVWAEEEWSE 10 Unmodified _GVWAEEEWSE_ 0 0 0 REV__ENST00000369390.3_1:120839153-120839405:+|nuORF REV__ENST00000369390.3_1:120839153-120839405:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8397521972656 3 407.840137 1220.49858 NaN NaN NaN NaN NaN NaN NaN 17.674 1 17.688 17.188 18.188 0.013865 0 0 0 1.0047 1 8807 8807 0.15932 0 1 + 17818 25974 12375 12586 20975 20975 -0.10284653249505027 GVWEEWTDR 9 Unmodified _GVWEEWTDR_ 0 0 0 ENST00000553467.1_1_14:96177069-96177123:-|nuORF ENST00000553467.1_1_14:96177069-96177123:-|nuORF ENST00000553467.1_1_14:96177069-96177123:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2083129882812 3 393.180605 1176.51999 -0.17497 -6.8796E-05 3.6943 0.0014525 3.5193 0.0013837 393.1820627682303 41.372 0.18359 41.37 41.261 41.444 -0.0017929 10 8 2 0 0 0 0.21473 1 22110 22110 2.4985 0.75621 1 3772300 17819 15189 12376 12587 20976 20976 -0.06121223430181999 GVWEEWTDRG 10 Unmodified _GVWEEWTDRG_ 0 0 0 ENST00000553467.1_1_14:96177069-96177123:-|nuORF ENST00000553467.1_1_14:96177069-96177123:-|nuORF ENST00000553467.1_1_14:96177069-96177123:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8581237792969 3 412.18776 1233.54145 1.0312 0.00042503 1.4571 0.00060058 2.4882 0.0010256 412.18856182980784 18.905 0.19463 16.283 16.187 16.381 -2.6215 19 11 2 0 0 0 0.69626 1 10014 10014 3.3196 1.4133 1 3344600 17820 15189 12377 12588 20977 20977 -0.06597838401467016 GVWEGKYNF 9 Unmodified _GVWEGKYNF_ 0 0 0 ENSG00000012660|ENST00000304434|ELOVL5;nc|ENSG00000012660|Q9NYP7-2|ELOVL5 ENSG00000012660|ENST00000304434|ELOVL5 ENSG00000012660|ENST00000304434|ELOVL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5121154785156 3 367.178425 1098.51345 NaN NaN NaN NaN NaN NaN NaN 16.758 1 16.763 16.263 17.263 0.0050564 0 0 0 0.84369 1 8418 8418 1.1933 0.41681 1 17821 462 12378 12589 20978 20978 -0.03187116590856931 GVWFVSPIGVI 11 Unmodified _GVWFVSPIGVI_ 0 0 0 REV__ENSG00000104290|ENST00000240093|FZD3 REV__ENSG00000104290|ENST00000240093|FZD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.33544921875 2 587.336967 1172.65938 NaN NaN NaN NaN NaN NaN NaN 52.898 1 52.446 51.946 52.946 -0.45173 0 0 0 0.77961 1 28597 28597 13.042 0.80181 1 + 17822 18346 12379 12590 20979 20979 0.07995765925193155 GVWGCRLCRGL 11 Unmodified _GVWGCRLCRGL_ 0 0 0 ENST00000416427.5_1_22:20105318-20105537:+|nuORF ENST00000416427.5_1_22:20105318-20105537:+|nuORF ENST00000416427.5_1_22:20105318-20105537:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5459594726562 3 407.211077 1218.6114 0.018185 7.4052E-06 1.5404 0.00062726 1.5586 0.00063467 407.2115518271071 27.359 0.204 27.387 27.309 27.513 0.028664 14 8 2 0 0 0 0.65108 1 14224 14224 4.4062 1.0865 1 6369300 17823 13044 12380 12591 20980 20980 0.010840454618346484 GVWGPLCR 8 Unmodified _GVWGPLCR_ 0 0 0 REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 443.8981018066406 2 444.231448 886.448342 NaN NaN NaN NaN NaN NaN NaN 97.925 1 91.749 91.249 92.249 -6.1757 0 0 0 0.95607 1 64909 64909 9.3474 2.9933 1 + 17824 20571 12381 12592 20981 20981 0.0005761040229117498 GVWHTWRR 8 Unmodified _GVWHTWRR_ 0 0 0 REV__ENST00000478189.1_1_6:33049883-33051411:+|nuORF REV__ENST00000478189.1_1_6:33049883-33051411:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2896118164062 2 549.291217 1096.56788 NaN NaN NaN NaN NaN NaN NaN 20.499 1 20.528 20.028 21.028 0.028357 0 0 0 0.97444 1 10378 10378 0.79363 0.19213 1 + 17825 27626 12382 12593 20982 20982 0.02345940071199948 GVWLEQREW 9 Unmodified _GVWLEQREW_ 0 0 0 nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 nc|ENSG00000134759|Q6IA86-2|ELP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.8021850585938 2 601.80128 1201.58801 NaN NaN NaN NaN NaN NaN NaN 24.138 1 24.138 23.638 24.638 0 0 0 0 0.85737 1 12322 12322 0.6015 0 1 17826 16203 12383 12594 20983 20983 -0.004723537794689037 GVWNCTEQD 9 Unmodified _GVWNCTEQD_ 0 0 0 ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL MSMS AL20221201_MKP_PDAC_01 4 351.1428527832031 3 351.143163 1050.40766 NaN NaN NaN NaN NaN NaN NaN 46.223 1 41.268 40.768 41.768 -4.9549 0 0 0 0.82739 1 28509 28509 2.4985 0 1 17827 7402 12384 12595 20984 20984 -0.11552820498627625 GVWPCHHDFK 10 Unmodified _GVWPCHHDFK_ 0 0 0 REV__ENSG00000186908|ENST00000426126|ZDHHC17 REV__ENSG00000186908|ENST00000426126|ZDHHC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5263671875 3 409.190559 1224.54985 NaN NaN NaN NaN NaN NaN NaN 15.155 1 15.155 14.655 15.655 0 0 0 0 0.99248 1 7276 7276 0.62683 0 1 + 17828 23609 12385 12596 20985 20985 -0.05344562965819932 GVWRGVGG 8 Unmodified _GVWRGVGG_ 0 0 0 ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2149963378906 2 394.214112 786.413671 0.31895 0.00012573 1.9504 0.00076887 2.2693 0.0008946 394.2146840344151 38.547 0.22486 38.547 38.414 38.639 0 28 11 3 0 0 0 0.80676 1 20561 20561 2.5775 0 1 3643800 17829 14811 12386 12597 20986 20986 0.01192110585861883 GVWRGVGG 8 Unmodified _GVWRGVGG_ 0 0 0 ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2147216796875 2 394.214112 786.413671 0.4463 0.00017594 0.48428 0.00019091 0.93058 0.00036685 394.21484755218387 40.207 0.43619 39.91 39.804 40.24 -0.29716 43 20 3 0 0 0 0.80975 1 21359 21359 0.79363 0 1 2670600 17830 14811 12386 12597 20987 20987 0.01192110585861883 GVWRGVGG 8 Unmodified _GVWRGVGG_ 0 0 0 ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2149658203125 2 394.214112 786.413671 -0.04936 -1.9458E-05 0.6743 0.00026582 0.62494 0.00024636 394.21425010152 34.646 0.14924 34.673 34.584 34.733 0.027401 10 6 2 0 0 0 0.80975 1 18288 18288 0.79363 0 1 1898500 17831 14811 12386 12597 20988 20988 0.01192110585861883 GVWRGVGG 8 Unmodified _GVWRGVGG_ 0 0 0 ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF ENST00000526177.5_1_11:75161715-75162177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2146911621094 2 394.214112 786.413671 -0.26271 -0.00010356 1.5863 0.00062533 1.3236 0.00052176 394.21455501786437 41.496 0.31544 41.494 41.279 41.594 -0.0017929 26 14 2 0 0 0 0.80975 1 22226 22226 0.79363 0 1 5274400 17832 14811 12386 12597 20989 20989 0.01192110585861883 GVWSALSDPSL 11 Unmodified _GVWSALSDPSL_ 0 0 0 REV__ENST00000532163.5_1_11:111945534-111946292:+|nuORF REV__ENST00000532163.5_1_11:111945534-111946292:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.751220703125 2 566.287671 1130.56079 -0.17266 -9.7776E-05 -0.033353 -1.8887E-05 -0.20601 -0.00011666 566.2875884749469 24.774 0.16707 24.774 24.697 24.864 0 20 7 3 0 0 0 0.30572 1 12712 12712 1.3295 0 1 1828200 + 17833 28455 12387 12598 20990 20990 0.0007311788947390596 GVWVPPMYL 9 Unmodified _GVWVPPMYL_ 0 0 0 ENST00000526069.1_1_16:14915456-14916883:-|nuORF;nc|ENSG00000091262|O95255-2|ABCC6;ENST00000542005.2_1_16:14916664-14918526:-|nuORF;ABCC6|p.L530Pfs*34|1|0.2|ENSG00000091262|chr16:16190210-16190211|-/GG|frameshift_variant;ENST00000574094.5_1_16:16275679-16317348:-|nuORF;nc|ENSG00000091262|O95255-3|ABCC6;ENSG00000091262|ENST00000205557|ABCC6 ENST00000526069.1_1_16:14915456-14916883:-|nuORF ENST00000526069.1_1_16:14915456-14916883:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.8001098632812 2 531.278063 1060.54157 0.35184 0.00018692 1.4946 0.00079403 1.8464 0.00098095 531.2786533514171 96.702 0.38895 96.702 96.542 96.931 0 40 22 2 0 0 0 0.21798 1 53367 53367 2.3027 0 1 1239800 17834 4 12388 12599 20991 20991 0.01372490064863996 GVWVRYYKAV 10 Unmodified _GVWVRYYKAV_ 0 0 0 REV__ENST00000372396.3_1_1:44170697-44170820:+|nuORF REV__ENST00000372396.3_1_1:44170697-44170820:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8456420898438 2 620.84549 1239.67643 NaN NaN NaN NaN NaN NaN NaN 99.797 1 99.639 99.139 100.14 -0.1575 0 0 0 1.0019 1 54480 54480 0.45834 0 1 + 17835 26109 12389 12600 20992 20992 0.06617686530967148 GVWYVWHNTF 10 Unmodified _GVWYVWHNTF_ 0 0 0 REV__ENSG00000135517|ENST00000652304|MIP REV__ENSG00000135517|ENST00000652304|MIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8781433105469 3 436.876857 1307.60874 NaN NaN NaN NaN NaN NaN NaN 14.102 1 14.11 13.61 14.61 0.0073986 0 0 0 1.0019 1 6979 6979 0.15932 0.01943 1 + 17836 20073 12390 12601 20993 20993 -0.03275763399824427 GVYAPSGYSY 10 Unmodified _GVYAPSGYSY_ 0 0 0 ENST00000508366.5_1_5:81605958-81640198:+|nuORF;ENST00000514672.1_1_5:81605958-81614116:+|nuORF;nc|ENSG00000205464|Q52LC2|ATP6AP1L ENST00000508366.5_1_5:81605958-81640198:+|nuORF ENST00000508366.5_1_5:81605958-81640198:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2391967773438 2 532.24019 1062.46583 NaN NaN NaN NaN NaN NaN NaN 43.302 1 43.287 42.787 43.787 -0.015667 0 0 0 0.98914 1 23206 23206 1.8442 1.0506 1 17837 14556 12391 12602 20994 20994 -0.06290815581701281 GVYDLLLVWS 10 Unmodified _GVYDLLLVWS_ 0 0 0 REV__CON__P34955 REV__CON__P34955 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.82080078125 2 582.818607 1163.62266 0.54298 0.00031646 3.3856 0.0019732 3.9286 0.0022897 582.8197864068806 62.638 0.28679 62.15 61.997 62.284 -0.48764 17 13 2 0 0 0 0.44373 1 34163 34163 19.257 5.3509 1 1575900 + + 17838 16852 12392 12603 20995 20995 0.04739469308651678 GVYEELVFFQ 10 Unmodified _GVYEELVFFQ_ 0 0 0 REV__ENSG00000154162|ENST00000382254|CDH12 REV__ENSG00000154162|ENST00000382254|CDH12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.8743286132812 3 410.87289 1229.59684 NaN NaN NaN NaN NaN NaN NaN 14.676 1 14.676 14.176 15.176 0 0 0 0 1.0019 1 6997 6997 0.15932 0.064481 1 + 17839 21211 12393 12604 20996 20996 -0.008774249336738649 GVYFPACVYE 10 Unmodified _GVYFPACVYE_ 0 0 0 REV__ENSG00000021488|ENST00000023064|SLC7A9 REV__ENSG00000021488|ENST00000023064|SLC7A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.177001953125 3 383.175804 1146.50558 NaN NaN NaN NaN NaN NaN NaN 75.39 1 74.913 74.413 75.413 -0.47714 0 0 0 0.99091 1 41268 41268 0.69767 0 1 + 17840 17109 12394 12605 20997 20997 -0.06181011902640421 GVYGPTCDCKF 11 Unmodified _GVYGPTCDCKF_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.1716918945312 3 397.172065 1188.49437 0.17967 7.1359E-05 -0.16611 -6.5975E-05 0.013555 5.3838E-06 397.1719486801302 45.882 0.27987 45.854 45.763 46.043 -0.028011 20 12 2 0 0 0 0.72981 1 24683 24683 1.4551 0.12547 1 2274300 + 17841 20755 12395 12606 20998 20998 -0.09234157268451781 GVYICRTHIQM 11 Unmodified _GVYICRTHIQM_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1;nc|ENSG00000147255|Q8N6C5-3|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8316040039062 2 660.8312 1319.64785 0.043498 2.8745E-05 -0.11457 -7.5709E-05 -0.071068 -4.6964E-05 660.8308874568671 92.922 0.079941 86.747 86.726 86.806 -6.1757 5 4 2 0 0 0 0.56638 1 61488 61488 13.042 0 1 10153000 17842 5837 12396 12607 20999 20999 0.0008087756789336709 GVYIYYTKL 9 Unmodified _GVYIYYTKL_ 0 0 0 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5-5|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.7655029296875 2 560.307875 1118.6012 1.8984 0.0010637 -3.5045 -0.0019636 -1.6061 -0.00089993 560.3057676788095 41.704 0.18665 37.097 36.999 37.186 -4.6079 14 11 2 0 0 0 0.16418 1 25082 25082 13.906 0 1 3395100 17843 8469 12397 12608 21000 21000 0.046640842798979065 GVYKKLMG 8 Unmodified _GVYKKLMG_ 0 0 0 ENST00000426405.1_1_X:73629614-73629932:+|nuORF;ENST00000444127.1_1_1:68708159-68708657:-|nuORF ENST00000426405.1_1_X:73629614-73629932:+|nuORF ENST00000426405.1_1_X:73629614-73629932:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.258544921875 2 448.257131 894.499709 NaN NaN NaN NaN NaN NaN NaN 15.856 1 13.299 12.799 13.799 -2.557 0 0 0 0.97444 1 8171 8171 2.3027 1.5091 1 17844 13176 12398 12609 21001 21001 0.04823934376361194 GVYKKLQVKL 10 Unmodified _GVYKKLQVKL_ 0 0 0 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.376708984375 2 588.379166 1174.74378 NaN NaN NaN NaN NaN NaN NaN 17.33 1 17.335 16.835 17.835 0.0050564 0 0 0 1.0019 1 8737 8737 0.45834 0.10771 1 + 17845 17240 12399 12610 21002 21002 0.1633971674195891 GVYKPFCYK 9 Unmodified _GVYKPFCYK_ 0 0 0 REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8572387695312 3 368.856406 1103.54739 0.76841 0.00028343 0.74468 0.00027468 1.5131 0.00055811 368.85704665292195 5.2481 0.064237 2.7661 2.7213 2.7855 -2.482 44 26 3 0 0 0 0.61256 1 2664 2664 0.26902 0 1 1358800 + 17846 26811 12400 12611 21003 21003 -0.000244114234646986 GVYLARHWLH 10 Unmodified _GVYLARHWLH_ 0 0 0 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 MSMS AL20221201_MKP_PDAC_01 4 417.8970031738281 3 417.896363 1250.66726 NaN NaN NaN NaN NaN NaN NaN 22.609 1 19.83 19.33 20.33 -2.7784 0 0 0 0.98914 1 12168 12168 0.77653 0 1 17847 4445 12401 12612 21004 21004 0.05195337965324143 GVYLKDAPPHY 11 Unmodified _GVYLKDAPPHY_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1;REV__nc|ENSG00000143379|Q15047-2|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.5530395507812 3 420.552151 1258.63462 0.40348 0.00016968 0.3921 0.0001649 0.79558 0.00033458 420.5523056887636 50.949 0.26731 50.536 50.394 50.661 -0.41351 16 12 2 0 0 0 0.69838 1 27452 27452 4.4062 2.3201 1 1834500 + 17848 20632;29677 12402 12613 21005 21005 0.015650860518007903 GVYLTRHGE 9 Unmodified _GVYLTRHGE_ 0 0 0 REV__nc|ENSG00000050438|Q2Y0W8-6|SLC4A8 REV__nc|ENSG00000050438|Q2Y0W8-6|SLC4A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2672729492188 2 516.267073 1030.51959 0.6566 0.00033898 0.61402 0.000317 1.2706 0.00065598 516.2670680392348 47.669 0.1623 47.63 47.518 47.68 -0.038643 10 7 2 0 0 0 0.40476 1 25697 25697 12.241 1.4167 1 6048900 + 17849 17260 12403 12614 21006 21006 0.0055540164069043385 GVYMRAKIT 9 Unmodified _GVYMRAKIT_ 0 0 0 REV__nc|ENSG00000177302|Q13472-2|TOP3A REV__nc|ENSG00000177302|Q13472-2|TOP3A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.273193359375 2 519.791869 1037.56919 1.5049 0.00078222 -0.93771 -0.00048741 0.56717 0.00029481 519.7912498724445 64.057 0.30727 57.882 57.669 57.976 -6.1757 20 16 2 0 0 0 0.21367 1 41397 41397 4.756 0.81161 1 11405000 + 17850 22976 12404 12615 21007 21007 0.05190393325119658 GVYPSQTGVLN 11 Unmodified _GVYPSQTGVLN_ 0 0 0 ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000431036.1_1_22:45298215-45298323:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8652648925781 3 378.864506 1133.57169 NaN NaN NaN NaN NaN NaN NaN 18.516 1 18.516 18.016 19.016 0 0 0 0 0.94184 1 9211 9211 0.40827 0 1 17851 13254 12405 12616 21008 21008 0.01024520263786144 GVYPWLRHN 9 Unmodified _GVYPWLRHN_ 0 0 0 ENSG00000102174|ENST00000379374|PHEX ENSG00000102174|ENST00000379374|PHEX ENSG00000102174|ENST00000379374|PHEX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.8025512695312 2 571.298707 1140.58286 -0.12396 -7.0816E-05 2.9255 0.0016713 2.8015 0.0016005 571.801853951244 24.771 0.14631 24.771 24.697 24.844 0 9 6 2 0 0 0 0.58865 1 12691 12691 2.0598 0.21551 1 527280 17852 2024 12406 12617 21009 21009 0.018193871485664204 GVYRYFAYDC 10 Unmodified _GVYRYFAYDC_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.212890625 3 419.518341 1255.53319 0.55462 0.00023267 2.4633 0.0010334 3.0179 0.0012661 419.51917754156347 46.36 0.14198 46.36 46.294 46.436 0 9 6 2 0 0 0 0.23981 1 25320 25320 0.15932 0 1 1054200 17853 1582 12407 12618 21010 21010 -0.08435108642402156 GVYRYFAYDC 10 Unmodified _GVYRYFAYDC_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 419.518341 1255.53319 0.59785 0.00025081 2.2283 0.0009348 2.8261 0.0011856 419.8537595844965 46.682 0.27179 46.346 46.19 46.462 -0.33664 -0.012971 -0.00040963 NaN 0.77653 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 9105700 17854 1582 12407 12618 -0.08435108642402156 GVYRYFAYDC 10 Unmodified _GVYRYFAYDC_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 419.518341 1255.53319 0.92882 0.00038966 2.8555 0.0011979 3.7843 0.0015876 419.5194171579464 46.404 0.14451 46.37 46.307 46.452 -0.033421 0.011762 0.00037976 NaN 0.77653 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1424900 17855 1582 12407 12618 -0.08435108642402156 GVYSYGLMH 9 Unmodified _GVYSYGLMH_ 0 0 0 ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENST00000572638.1_1_17:44625595-44632942:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7412719726562 2 513.739302 1025.46405 NaN NaN NaN NaN NaN NaN NaN 21.856 1 21.856 21.356 22.356 0 0 0 0 0.7243 1 11092 11092 8.5933 2.2392 1 17856 15494 12408 12619 21011 21011 -0.04766147871305293 GVYTGQMSNVL 11 Unmodified _GVYTGQMSNVL_ 0 0 0 ENSG00000135801|ENST00000258281|TAF5L ENSG00000135801|ENST00000258281|TAF5L ENSG00000135801|ENST00000258281|TAF5L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7849731445312 2 584.786981 1167.55941 NaN NaN NaN NaN NaN NaN NaN 74.768 1 74.768 74.268 75.268 0 0 0 0 0.9385 1 41600 41600 3.5965 0.70727 1 17857 4743 12409 12620 21012 21012 -0.017668394709289714 GVYVSHNLLL 10 Unmodified _GVYVSHNLLL_ 0 0 0 REV__ENSG00000072315|ENST00000262839|TRPC5 REV__ENSG00000072315|ENST00000262839|TRPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8171997070312 2 557.816399 1113.61824 0.53754 0.00029985 0.35088 0.00019573 0.88842 0.00049558 557.816706543529 52.967 0.30885 52.515 52.338 52.647 -0.45173 37 15 3 0 0 0 0.57893 1 28586 28586 12.241 0 1 5381800 + 17858 17514 12410 12621 21013 21013 0.0659800488572273 GVYWSESL 8 Unmodified _GVYWSESL_ 0 0 0 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 MSMS AL20221201_MKP_PDAC_01 4 470.7232055664062 2 470.724175 939.433798 NaN NaN NaN NaN NaN NaN NaN 76.651 1 70.475 69.975 70.975 -6.1757 0 0 0 0.88073 1 50136 50136 19.439 4.8573 1 17859 6519 12411 12622 21014 21014 -0.03834183264859803 GWAAIILKEI 10 Unmodified _GWAAIILKEI_ 0 0 0 REV__nc|ENSG00000137251|Q9UJW2-2|TINAG REV__nc|ENSG00000137251|Q9UJW2-2|TINAG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8931579589844 3 371.893737 1112.65938 -0.25006 -9.2994E-05 0.69204 0.00025737 0.44199 0.00016437 371.8938693157286 53.9 0.25316 53.833 53.688 53.941 -0.066936 31 12 3 0 0 0 0.67046 1 29226 29226 6.1918 1.2948 1 8959300 + 17860 20226 12412 12623 21015 21015 0.10755765925205196 GWAWRAGFRY 10 Unmodified _GWAWRAGFRY_ 0 0 0 REV__ENST00000318584.9_1_19:47260376-47260967:+|nuORF REV__ENST00000318584.9_1_19:47260376-47260967:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.3160400390625 2 635.317432 1268.62031 NaN NaN NaN NaN NaN NaN NaN 62.683 1 62.683 62.183 63.183 0 0 0 0 0.97302 1 34966 34966 3.5965 0.31518 1 + 17861 25483 12413 12624 21016 21016 -0.003255215858189331 GWDIPKRY 8 Unmodified _GWDIPKRY_ 0 0 0 REV__ENSG00000213139|ENST00000307944|CRYGS REV__ENSG00000213139|ENST00000307944|CRYGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7726440429688 2 517.774534 1033.53451 0.78872 0.00040838 -1.1186 -0.0005792 -0.3299 -0.00017082 517.7736809621406 80.619 0.72833 80.126 79.853 80.582 -0.49247 81 30 4 0 0 0 0.77907 1 44269 44269 10.183 1.5901 1 11543000 + 17862 24274 12414 12625 21017 21017 0.019088935086756464 GWEEVSYKL 9 Unmodified _GWEEVSYKL_ 0 0 0 REV__ENST00000261530.11_1_14:76672664-76672892:+|nuORF REV__ENST00000261530.11_1_14:76672664-76672892:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7777099609375 2 555.776939 1109.53933 0.46462 0.00025822 0.29449 0.00016367 0.75911 0.00042189 555.7769972033908 86.427 0.25165 86.427 86.242 86.494 0 16 11 2 0 0 0 0.54444 1 47854 47854 4.756 0.42677 1 314000 + 17863 24995 12415 12626 21018 21018 -0.01106267139243755 GWELPFSEV 9 Unmodified _GWELPFSEV_ 0 0 0 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2586059570312 2 532.258382 1062.50221 0.25051 0.00013334 0.1225 6.5204E-05 0.37301 0.00019854 532.2581160641248 58.098 0.18788 57.609 57.471 57.659 -0.48974 16 8 2 0 0 0 0.32871 1 31568 31568 15.847 1.0089 1 1652800 17864 9030 12416 12627 21019 21019 -0.026539386850117808 GWFPQPHVPW 10 Unmodified _GWFPQPHVPW_ 0 0 0 nc|ENSG00000204290|Q9UIR0-4|BTNL2;nc|ENSG00000204290|Q9UIR0-2|BTNL2;nc|ENSG00000204290|Q9UIR0-1|BTNL2;ENSG00000204290|ENST00000454136|BTNL2 nc|ENSG00000204290|Q9UIR0-4|BTNL2 nc|ENSG00000204290|Q9UIR0-4|BTNL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.5419921875 3 417.541697 1249.60326 NaN NaN NaN NaN NaN NaN NaN 24.725 1 24.725 24.225 25.225 0 0 0 0 1.0019 1 12646 12646 0.15932 0 1 17865 10260 12417 12628 21020 21020 -0.011554421916343927 GWGVPGTP 8 Unmodified _GWGVPGTP_ 0 0 0 nc|ENSG00000198881|Q8WXK4|ASB12;ENSG00000198881|ENST00000362002|ASB12 nc|ENSG00000198881|Q8WXK4|ASB12 nc|ENSG00000198881|Q8WXK4|ASB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.6943054199219 2 385.695221 769.375889 -0.2008 -7.7447E-05 -0.33981 -0.00013106 -0.5406 -0.00020851 385.69502452921637 40.395 0.21458 40.395 40.276 40.491 0 15 10 2 0 0 0 0.80624 1 21727 21727 2.8892 0 1 2296700 17866 10184 12418 12629 21021 21021 -0.01802400399628823 GWIWRWGWGRR 11 Unmodified _GWIWRWGWGRR_ 0 0 0 ENSG00000169223|ENST00000303127|LMAN2 ENSG00000169223|ENST00000303127|LMAN2 ENSG00000169223|ENST00000303127|LMAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.9334716796875 3 505.933811 1514.7796 0.21727 0.00010992 0.91029 0.00046055 1.1276 0.00057047 505.93435965048855 19.157 0.19986 19.165 19.08 19.28 0.0078487 21 12 2 0 0 0 0.73992 1 9730 9730 0.50596 0.051438 1 760110 17867 7851 12419 12630 21022 21022 0.04280611762146691 GWKENHATF 9 Unmodified _GWKENHATF_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39720798-39721572:-|nuORF;ENST00000491997.2_1_13:51997202-52025480:-|nuORF;nc|ENSG00000102786|Q9UL03-2|INTS6;ENST00000486195.6_1_13:51961577-52026149:-|nuORF;ENST00000491723.5_1_13:51995314-52026679:-|nuORF;ENST00000481908.5_1_X:134654863-134703297:+|nuORF;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2603759765625 2 545.259248 1088.50394 -0.37967 -0.00020702 -0.35599 -0.00019411 -0.73566 -0.00040113 545.2602358107467 26.452 0.10251 26.452 26.386 26.488 0 7 4 2 0 0 0 0.42049 1 13607 13607 11.64 3.7301 1 553000 17868 2065 12420 12631 21023 21023 -0.03676884876404074 GWKNTCNNIF 10 Unmodified _GWKNTCNNIF_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150936938-150939392:-|nuORF ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.012451171875 2 598.77949 1195.54443 NaN NaN NaN NaN NaN NaN NaN 70.868 1 70.868 70.368 71.368 0 0 0 0 0.97855 1 39484 39484 2.9952 0.69251 1 17869 5510 12421 12632 21024 21024 -0.04552286548300799 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7710571289062 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 1.6132 1 1.5399 1.0399 2.0399 -0.07329 0 0 0 0.97444 1 809 809 0 0 1 17870 8060 12422 12633 21025 21025 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7718200683594 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 2.8178 1 2.7458 2.2458 3.2458 -0.072029 0 0 0 0.97444 1 1391 1391 0 0 1 17871 8060 12422 12633 21026 21026 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7705993652344 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 3.4871 1 3.415 2.915 3.915 -0.072029 0 0 0 0.97444 1 1719 1719 0 0 1 17872 8060 12422 12633 21027 21027 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7703552246094 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 4.358 1 4.2852 3.7852 4.7852 -0.072869 0 0 0 0.97444 1 2155 2155 0 0 1 17873 8060 12422 12633 21028 21028 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7715148925781 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 5.0188 1 4.9414 4.4414 5.4414 -0.07749 0 0 0 0.97444 1 2480 2480 0 0 1 17874 8060 12422 12633 21029 21029 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7718505859375 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 8.5002 1 8.4086 7.9086 8.9086 -0.09156 0 0 0 0.97444 1 4170 4170 0 0 1 17875 8060 12422 12633 21030 21030 0.05395000347959922 GWKVGWVL 8 Unmodified _GWKVGWVL_ 0 0 0 ENST00000462722.5_1_9:131595865-131599118:-|nuORF;nc|ENSG00000286112|Q16773-2|KYAT1;ENSG00000171097|ENST00000302586|KYAT1 ENST00000462722.5_1_9:131595865-131599118:-|nuORF ENST00000462722.5_1_9:131595865-131599118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7715148925781 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 3.071 1 3.0587 2.5587 3.5587 -0.012334 0 0 0 0.97444 1 1558 1558 0 0 1 17876 8060 12422 12633 21031 21031 0.05395000347959922 GWLKPRWGGGA 11 Unmodified _GWLKPRWGGGA_ 0 0 0 REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5494079589844 3 395.548964 1183.62506 0.47471 0.00018777 0.086212 3.4101E-05 0.56092 0.00022187 395.8833687193926 58.541 0.31298 58.48 58.294 58.607 -0.060722 24 15 2 0 0 0 0.7326 1 31838 31838 0.40827 0 1 3478900 + 17877 25317 12423 12634 21032 21032 0.04059362556927226 GWLRELPDQI 10 Unmodified _GWLRELPDQI_ 0 0 0 ENSG00000010327|ENST00000321725|STAB1;ENST00000479355.1_1_3:52529402-52535457:+|nuORF;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8848266601562 3 409.555784 1225.64552 0.56117 0.00022983 -2.6441 -0.0010829 -2.0829 -0.00085307 409.55535040688943 17.444 0.16861 14.858 14.736 14.904 -2.5866 48 30 2 0 0 0 0.68371 1 9081 9081 4.7159 2.2174 1 6983600 17878 422 12424 12635 21033 21033 0.04172488426070231 GWLWRLGIWSL 11 Unmodified _GWLWRLGIWSL_ 0 0 0 ENST00000398665.7_1_19:2231997-2232204:+|nuORF ENST00000398665.7_1_19:2231997-2232204:+|nuORF ENST00000398665.7_1_19:2231997-2232204:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.9279174804688 3 462.927552 1385.76083 0.46921 0.00021721 1.4606 0.00067616 1.9298 0.00089337 462.9281331426004 27.32 0.25511 24.283 24.161 24.416 -3.0365 20 12 2 0 0 0 0.39949 1 15103 15103 12.856 0.62836 1 19724000 17879 12855 12425 12636 21034 21034 0.0833763734774493 GWMEISHTF 9 Oxidation (M) _GWM(Oxidation (M))EISHTF_ GWM(1)EISHTF GWM(78)EISHTF 0 0 1 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2491455078125 2 562.247492 1122.48043 0.6657 0.00037429 -0.75204 -0.00042283 -0.086344 -4.8547E-05 562.2474422794384 53.698 0.25336 53.247 53.109 53.362 -0.45173 28 12 3 0 0 0 0.010877 1 29033 29033 77.984 61.042 1 9642000 17880 3234 12426 12637 21035 21035 580 -0.07591066705231242 GWMEISHTF 9 Oxidation (M) _GWM(Oxidation (M))EISHTF_ GWM(1)EISHTF GWM(78)EISHTF 0 0 1 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.2470092773438 2 562.247492 1122.48043 NaN NaN NaN NaN NaN NaN NaN 53.356 1 53.292 52.792 53.792 -0.063423 0 0 0 0.020354 1 28934 28934 77.984 61.042 1 17881 3234 12426 12637 21036 21036 580 -0.07591066705231242 GWMEISHTF 9 Oxidation (M) _GWM(Oxidation (M))EISHTF_ GWM(1)EISHTF GWM(67)EISHTF 0 0 1 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2501220703125 2 562.247492 1122.48043 1.0701 0.00060165 0.74318 0.00041785 1.8133 0.0010195 562.2480879231678 59.572 0.29502 53.458 53.219 53.515 -6.1147 33 15 3 0 0 0 0.016184 1 38260 38260 67.344 50.402 1 20216000 17882 3234 12426 12637 21037 21037 580 -0.07591066705231242 GWMWVFYFF 9 Unmodified _GWMWVFYFF_ 0 0 0 nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3;ENST00000477571.5_1_7:139997281-140048561:-|nuORF nc|ENSG00000157800|Q8NCC5-2|SLC37A3 nc|ENSG00000157800|Q8NCC5-2|SLC37A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.7938842773438 2 641.791338 1281.56812 4.0919 0.0026262 -0.83391 -0.00053519 3.258 0.002091 641.7906880029533 98.665 0.13425 98.636 98.559 98.693 -0.028282 8 4 2 0 0 0 0.3554 1 54817 54817 14.582 3.7822 1 3021500 17883 6541 12427 12638 21038 21038 -0.0613982104380284 GWMWVFYFF 9 Unmodified _GWMWVFYFF_ 0 0 0 nc|ENSG00000157800|Q8NCC5-2|SLC37A3;ENSG00000157800|ENST00000326232|SLC37A3;ENST00000477571.5_1_7:139997281-140048561:-|nuORF nc|ENSG00000157800|Q8NCC5-2|SLC37A3 nc|ENSG00000157800|Q8NCC5-2|SLC37A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 641.791338 1281.56812 0.13775 8.8408E-05 1.8588 0.001193 1.9966 0.0012814 641.7925061281304 98.9 0.18224 98.706 98.63 98.812 -0.19321 0.035015 0.00021806 NaN 14.582 14 5 4 NaN NaN NaN NaN 0 NaN NaN 0 2528400 17884 6541 12427 12638 -0.0613982104380284 GWPKQNIAL 9 Unmodified _GWPKQNIAL_ 0 0 0 REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7903442382812 2 513.790184 1025.56581 0.2572 0.00013215 -0.32091 -0.00016488 -0.063714 -3.2736E-05 513.7906131265748 55.212 0.27574 54.734 54.607 54.883 -0.47798 25 12 3 0 0 0 0.087258 1 29950 29950 36.044 3.7387 1 3224700 + 17885 28629 12428 12639 21039 21039 0.05405466542742943 GWPKQNIAL 9 Unmodified _GWPKQNIAL_ 0 0 0 REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF REV__ENST00000543016.1_1_12:124101121-124103187:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.790184 1025.56581 0.38146 0.00019599 0.71066 0.00036513 1.0921 0.00056112 513.7903070044875 55.197 0.19901 55.128 55.019 55.218 -0.068737 0.19694 0.00026383 NaN 36.044 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 807830 + 17886 28629 12428 12639 0.05405466542742943 GWPPVQLPYL 10 Unmodified _GWPPVQLPYL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS AL20221201_MKP_PDAC_01 4 585.3211669921875 2 585.321317 1168.62808 NaN NaN NaN NaN NaN NaN NaN 101.01 1 94.835 94.335 95.335 -6.1757 0 0 0 0.27319 1 67690 67690 54.774 20.671 1 17887 1104 12429 12640 21040 21040 0.05051192891096434 GWPSGCSRWGR 11 Unmodified _GWPSGCSRWGR_ 0 0 0 ENST00000360409.7_1_2:206547248-206547725:+|nuORF;ENST00000417189.5_1_2:206547248-206547832:+|nuORF ENST00000360409.7_1_2:206547248-206547725:+|nuORF ENST00000360409.7_1_2:206547248-206547725:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8602905273438 3 416.861213 1247.56181 -0.6804 -0.00028363 -0.9565 -0.00039873 -1.6369 -0.00068236 416.86081371684935 15.99 0.24192 15.99 15.819 16.061 0 116 56 3 0 0 0 0.71618 1 7786 7786 1.1098 0 1 1549300 17888 12166 12430 12641 21041 21041 -0.0520694622261999 GWRRRRRRRRQ 11 Unmodified _GWRRRRRRRRQ_ 0 0 0 nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20221201_MKP_PDAC_01 4 546.99951171875 3 547.000212 1637.97881 NaN NaN NaN NaN NaN NaN NaN 56.214 1 50.237 49.737 50.737 -5.9769 0 0 0 0.94181 1 35854 35854 1.2148 1.2148 1 17889 16261 12431 12642 21042 21042 0.18533684833414554 GWRRRRWRRRL 11 Unmodified _GWRRRRWRRRL_ 0 0 0 ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.5012817382812 2 827.498524 1652.9825 NaN NaN NaN NaN NaN NaN NaN 82.537 1 82.599 82.099 83.099 0.062004 0 0 0 0.9435 1 45662 45662 0 0 1 17890 15775 12432 12643 21043 21043 0.18212354607271664 GWSFVEGE 8 Unmodified _GWSFVEGE_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 911.3985595703125 1 910.394124 909.386848 -0.041564 -3.7839E-05 0.48877 0.00044497 0.44721 0.00040713 910.3944113384762 65.253 0.27608 65.253 65.143 65.419 0 19 10 2 0 0 0 0.80975 1 36381 36381 0.79363 0 1 870160 + 17891 18320 12433 12644 21044 21044 -0.0714704281598415 GWSPIIGM 8 Unmodified _GWSPIIGM_ 0 0 0 REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF REV__ENST00000475319.1_1_6:127611016-127636085:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.4330444335938 1 860.433486 859.42621 0.096603 8.312E-05 0.52162 0.00044882 0.61823 0.00053194 860.4340635962467 97.294 0.74128 97.294 96.913 97.654 0 79 35 3 0 0 0 0.80676 2 53692 53692;53797 2.5775 0 1 2417100 + 17892 17924 12434 12645 21045;21046 21045 -0.00912614066101014 GWTRPLTSL 9 Unmodified _GWTRPLTSL_ 0 0 0 ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7877807617188 2 515.787641 1029.56073 0.12089 6.2355E-05 -0.042839 -2.2096E-05 0.078054 4.0259E-05 515.7877055609235 43.419 0.26245 43.109 42.969 43.231 -0.31039 26 12 3 0 0 0 0.022193 1 23073 23073 61.357 0 1 27932000 17893 11455 12435 12646 21047 21047 0.04713162680127425 GWTRPLTSL 9 Unmodified _GWTRPLTSL_ 0 0 0 ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7884521484375 2 515.787641 1029.56073 0.68854 0.00035514 -1.1428 -0.00058945 -0.45427 -0.00023431 515.7873302043485 43.089 0.22758 43.073 42.936 43.164 -0.015667 16 10 2 0 0 0 0.022193 1 23090 23090 61.357 0 1 7736000 17894 11455 12435 12646 21048 21048 0.04713162680127425 GWTRPLTSL 9 Unmodified _GWTRPLTSL_ 0 0 0 ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF ENST00000288943.4_1_2:96809359-96809716:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 515.787641 1029.56073 0.68854 0.00035514 -1.1428 -0.00058945 -0.45427 -0.00023431 515.7873302043485 43.089 0.22758 43.073 42.936 43.164 -0.015667 -0.017717 -0.00068946 NaN 61.357 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 7736000 17895 11455 12435 12646 0.04713162680127425 GWVRGVGG 8 Unmodified _GWVRGVGG_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2144165039062 2 394.214112 786.413671 0.020488 8.0767E-06 0.96291 0.00037959 0.9834 0.00038767 394.21430112309815 34.227 0.29033 34.255 34.101 34.391 0.027401 19 13 2 0 0 0 0.80992 1 18040 18040 0.69038 0 1 3624200 17896 5727 12436 12647 21049 21049 0.011921105858732517 GWVSPHHSF 9 Unmodified _GWVSPHHSF_ 0 0 0 ENST00000418107.2_1_6:32906702-32908822:-|nuORF ENST00000418107.2_1_6:32906702-32908822:-|nuORF ENST00000418107.2_1_6:32906702-32908822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2494506835938 2 527.248683 1052.48281 NaN NaN NaN NaN NaN NaN NaN 70.647 1 70.647 70.147 71.147 0 0 0 0 0.84564 1 39358 39358 2.0598 1.2661 1 17897 13063 12437 12648 21050 21050 -0.041328501852376576 GWYDEEHPLVF 11 Unmodified _GWYDEEHPLVF_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 696.3168334960938 2 696.31696 1390.61937 0.039975 2.7836E-05 1.1942 0.00083157 1.2342 0.0008594 696.3177083647381 75.464 0.22897 75.464 75.318 75.547 0 17 9 2 0 0 0 0.46578 1 41974 41974 18.146 14.55 1 739600 17898 6836 12438 12649 21051 21051 -0.060318255360471085 GWYDEEHPLVF 11 Unmodified _GWYDEEHPLVF_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 696.3175048828125 2 696.31696 1390.61937 0.4104 0.00028577 0.57846 0.00040279 0.98886 0.00068856 696.3171941082306 75.888 0.34155 75.41 75.255 75.596 -0.47713 29 14 3 0 0 0 0.15484 1 41528 41528 36.127 32.531 1 2007200 17899 6836 12438 12649 21052 21052 -0.060318255360471085 GWYDEEHPLVF 11 Unmodified _GWYDEEHPLVF_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 696.3186645507812 2 696.31696 1390.61937 0.73511 0.00051187 0.13071 9.1013E-05 0.86582 0.00060288 696.3172500430522 89.302 0.68904 83.126 82.763 83.452 -6.1757 63 38 2 0 0 0 2.9767E-06 3 58822 58822;58951;59089 99.799 88.304 1 10634000 17900 6836 12438 12649 21053;21054;21055 21053 -0.060318255360471085 GYADIVDVL 9 Unmodified _GYADIVDVL_ 0 0 0 ENSG00000119673|ENST00000238651|ACOT2;ENSG00000184227|ENST00000311148|ACOT1;nc|ENSG00000119673|P49753-2|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.1603393554688 1 964.498589 963.491313 0.16724 0.0001613 0.74769 0.00072115 0.91493 0.00088245 964.4992661801032 82.815 0.3285 82.815 82.585 82.914 0 23 14 2 0 0 0 0.23158 3 45903 45884;45903;45984 20.454 6.1774 1 717590 17901 3451 12439 12650 21056;21057;21058 21057 0.008106589407248066 GYADIVDVL 9 Unmodified _GYADIVDVL_ 0 0 0 ENSG00000119673|ENST00000238651|ACOT2;ENSG00000184227|ENST00000311148|ACOT1;nc|ENSG00000119673|P49753-2|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7530517578125 2 482.752933 963.491313 0.27319 0.00013188 0.80355 0.00038792 1.0767 0.0005198 482.75333814662287 82.771 0.19005 82.771 82.673 82.863 0 11 8 2 0 0 0 0.54444 1 45923 45923 4.756 1.8668 1 348080 17902 3451 12439 12650 21059 21059 0.008106589407248066 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.27685546875 2 496.276575 990.538597 0.2281 0.0001132 0.25181 0.00012497 0.47991 0.00023817 496.2766625666536 92.535 0.42593 92.535 92.354 92.78 0 83 28 4 0 0 0 0.070838 2 51200 51106;51200 39.957 11.166 1 7981100 17903 4660 12440 12651 21060;21061 21061 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.5439453125 1 991.545874 990.538597 -0.0013208 -1.3096E-06 0.28344 0.00028105 0.28212 0.00027974 991.5462375151533 92.58 0.35406 92.58 92.385 92.739 0 40 22 2 0 0 0 0.28047 1 51117 51117 18.135 5.6034 1 1572300 17904 4660 12440 12651 21062 21062 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2769775390625 2 496.276575 990.538597 0.45372 0.00022517 0.40221 0.00019961 0.85592 0.00042478 496.27672065133714 93.069 0.60102 92.612 92.356 92.957 -0.4574 97 30 5 0 0 0 0.016184 3 50888 50780;50888;50981 67.344 18.998 1 32253000 17905 4660 12440 12651 21063;21064;21065 21064 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 991.546875 1 991.545874 990.538597 0.30818 0.00030557 0.5014 0.00049716 0.80958 0.00080274 991.5463712705711 93.041 0.40052 92.584 92.436 92.836 -0.4574 57 21 4 0 0 0 0.022193 1 50794 50794 61.357 5.1804 1 9356900 17906 4660 12440 12651 21066 21066 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2767639160156 2 496.276575 990.538597 1.7094 0.00084834 -0.97015 -0.00048146 0.73925 0.00036687 496.275876854318 92.589 0.38852 92.62 92.441 92.83 0.030197 30 14 3 0 0 0 0.016184 1 51478 51478 67.344 22.937 1 7875900 17907 4660 12440 12651 21067 21067 0.04294938211717181 GYADIVQLL 9 Unmodified _GYADIVQLL_ 0 0 0 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 ENSG00000134996|ENST00000346234|OSTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2778015136719 2 496.276575 990.538597 0.70249 0.00034863 0.086803 4.3078E-05 0.78929 0.00039171 496.2766343855816 99.922 0.35926 93.746 93.525 93.884 -6.1757 62 25 4 0 0 0 0.0095811 1 66630 66630 81.613 26.84 1 657240000 17908 4660 12440 12651 21068 21068 0.04294938211717181 GYADLSKLF 9 Unmodified _GYADLSKLF_ 0 0 0 REV__ENSG00000188984|ENST00000359318|AADACL3 REV__ENSG00000188984|ENST00000359318|AADACL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2688293457031 2 507.26875 1012.52295 0.40713 0.00020652 -1.5551 -0.00078883 -1.1479 -0.00058231 507.2680364968782 92.553 0.30052 92.553 92.418 92.718 0 37 18 3 0 0 0 0.30202 2 51143 51143;51242 17.113 7.7655 1 705040 + 17909 23748 12441 12652 21069;21070 21069 0.017186516946594566 GYADLSKLF 9 Unmodified _GYADLSKLF_ 0 0 0 REV__ENSG00000188984|ENST00000359318|AADACL3 REV__ENSG00000188984|ENST00000359318|AADACL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2679443359375 2 507.26875 1012.52295 0.066923 3.3948E-05 -1.1618 -0.00058936 -1.0949 -0.00055542 507.2683550992815 93.051 0.44918 92.594 92.436 92.885 -0.4574 38 23 2 0 0 0 0.094149 1 50889 50889 34.402 10.381 1 2490900 + 17910 23748 12441 12652 21071 21071 0.017186516946594566 GYADLSKLF 9 Unmodified _GYADLSKLF_ 0 0 0 REV__ENSG00000188984|ENST00000359318|AADACL3 REV__ENSG00000188984|ENST00000359318|AADACL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.26875 1012.52295 0.40713 0.00020652 -1.5551 -0.00078883 -1.1479 -0.00058231 507.2680364968782 92.553 0.30052 92.553 92.418 92.718 0 -0.020439 -0.00026849 NaN 34.402 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 705040 + 17911 23748 12441 12652 0.017186516946594566 GYADVILQL 9 Unmodified _GYADVILQL_ 0 0 0 REV__nc|ENSG00000259207|P05106-2|ITGB3 REV__nc|ENSG00000259207|P05106-2|ITGB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.5614624023438 1 991.545874 990.538597 0.30818 0.00030557 0.5014 0.00049716 0.80958 0.00080274 991.5463712705711 93.041 0.40052 92.584 92.436 92.836 -0.4574 57 21 4 0 0 0 0.48152 1 50851 50851 8.5933 0 1 9356900 + 17912 24571 12442 12653 21072 21072 0.04294938211717181 GYAGSWVSI 9 Unmodified _GYAGSWVSI_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000480331.5_1_1:155023340-155028240:+|nuORF;ENST00000531831.5_1_1:155023862-155026718:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 939.4569702148438 1 939.457059 938.449782 0.017384 1.6332E-05 0.20476 0.00019236 0.22214 0.0002087 939.4569776470719 70.191 0.30029 69.712 69.568 69.869 -0.47903 32 16 3 0 0 0 0.03327 1 38345 38345 53.576 26.692 1 4639300 17913 9 12443 12654 21073 21073 -0.021904770279661534 GYAGSWVSI 9 Unmodified _GYAGSWVSI_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000480331.5_1_1:155023340-155028240:+|nuORF;ENST00000531831.5_1_1:155023862-155026718:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.45751953125 1 939.457059 938.449782 -0.069325 -6.5128E-05 0.25485 0.00023942 0.18553 0.0001743 939.4572326832272 76.91 0.52661 70.734 70.411 70.938 -6.1757 64 27 3 0 0 0 0.013472 4 50262 50140;50201;50262;50379 70.716 36.613 1 39682000 17914 9 12443 12654 21074;21075;21076;21077 21076 -0.021904770279661534 GYAHLTHLL 9 Unmodified _GYAHLTHLL_ 0 0 0 ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7828979492188 2 512.782359 1023.55016 0.66081 0.00033885 0.0068747 3.5252E-06 0.66768 0.00034238 512.7825591764761 49.958 0.30066 44.419 44.218 44.518 -5.5391 31 18 2 0 0 0 0.0083087 1 31208 31208 97.075 60.948 1 13634000 17915 1635 12444 12655 21078 21078 0.03933180025705951 GYAHWIGLF 9 Unmodified _GYAHWIGLF_ 0 0 0 nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.272216796875 2 532.271627 1062.5287 1.5825 0.00084231 -1.4241 -0.000758 0.15838 8.4301E-05 532.2708359024416 82.125 0.23984 82.187 82.056 82.296 0.062004 15 9 2 0 0 0 0.085487 1 45418 45418 36.466 15.595 1 4545000 17916 6252 12445 12656 21079 21079 -6.205003023751487E-05 GYAKLIAEL 9 Unmodified _GYAKLIAEL_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2872009277344 2 489.286943 976.559333 0.19955 9.7638E-05 1.1736 0.0005742 1.3731 0.00067184 489.2875780996961 63.917 0.24327 63.917 63.779 64.022 0 15 9 2 0 0 0 0.23158 1 35645 35645 20.454 6.5476 1 958710 17917 3869 12446 12657 21080 21080 0.07011528591374372 GYAKLIAEL 9 Unmodified _GYAKLIAEL_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.28955078125 2 489.286943 976.559333 0.83237 0.00040727 1.8837 0.00092165 2.716 0.0013289 489.28782381789966 64.324 0.29729 63.839 63.696 63.993 -0.48512 29 13 3 0 0 0 0.19127 1 35070 35070 24.021 10.115 1 2157600 17918 3869 12446 12657 21081 21081 0.07011528591374372 GYAKLIAEL 9 Unmodified _GYAKLIAEL_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MSMS AL20221201_MKP_PDAC_01 4 489.287353515625 2 489.286943 976.559333 NaN NaN NaN NaN NaN NaN NaN 85.435 1 79.26 78.76 79.76 -6.1757 0 0 0 0.22437 1 56268 56268 29.082 8.2104 1 17919 3869 12446 12657 21082 21082 0.07011528591374372 GYARLIETL 9 Unmodified _GYARLIETL_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2945556640625 2 518.295299 1034.57605 0.60642 0.0003143 -0.60429 -0.0003132 0.0021343 1.1062E-06 518.2949268031849 59.792 0.20819 59.792 59.671 59.879 0 20 9 3 0 0 0 0.044011 1 33371 33371 47.749 11.622 1 2172000 17920 16110 12447 12658 21083 21083 0.060140294773418645 GYARLIETL 9 Unmodified _GYARLIETL_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.294677734375 2 518.295299 1034.57605 -0.0021506 -1.1146E-06 -0.048614 -2.5196E-05 -0.050765 -2.6311E-05 518.295109840103 60.235 0.25945 59.745 59.607 59.866 -0.49079 27 12 3 0 0 0 0.010611 1 32764 32764 78.728 22.551 1 12257000 17921 16110 12447 12658 21084 21084 0.060140294773418645 GYASLLFKL 9 Unmodified _GYASLLFKL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.296875 2 506.29731 1010.58007 0.33574 0.00016998 -0.58975 -0.00029859 -0.25401 -0.00012861 506.29686294562424 83.415 0.32112 83.478 83.357 83.678 0.063171 18 11 2 0 0 0 0.010818 1 46176 46176 78.149 40.175 1 12327000 17922 8367 12448 12659 21085 21085 0.07520118971035572 GYASLLFKL 9 Unmodified _GYASLLFKL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2981872558594 2 506.29731 1010.58007 0.0059945 3.035E-06 0.51841 0.00026247 0.5244 0.0002655 506.2977197954636 98.828 0.12663 92.652 92.589 92.716 -6.1757 20 9 3 0 0 0 0.022193 1 65634 65634 61.357 25.313 1 114620000 17923 8367 12448 12659 21086 21086 0.07520118971035572 GYASRFIVI 9 Unmodified _GYASRFIVI_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2930297851562 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 65.753 1 65.763 65.263 66.263 0.0095596 0 0 0 0.15231 1 36048 36048 36.506 11.832 1 17924 6269 12449 12660 21087 21087 0.05926350685513171 GYASRFIVI 9 Unmodified _GYASRFIVI_ 0 0 0 ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA ENSG00000153574|ENST00000283646|RPIA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2926635742188 2 513.292559 1024.57057 NaN NaN NaN NaN NaN NaN NaN 65.936 1 65.945 65.445 66.445 0.0095596 0 0 0 0.20976 1 36154 36154 29.841 5.6306 1 17925 6269 12449 12660 21088 21088 0.05926350685513171 GYATEFFQDF 10 Unmodified _GYATEFFQDF_ 0 0 0 REV__ENSG00000005073|ENST00000006015|HOXA11 REV__ENSG00000005073|ENST00000006015|HOXA11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7639770507812 2 612.764029 1223.5135 NaN NaN NaN NaN NaN NaN NaN 60.503 1 60.014 59.514 60.514 -0.48932 0 0 0 0.76313 1 32948 32948 13.906 0.86358 1 + 17926 16962 12450 12661 21089 21089 -0.08931161381519814 GYDFGYDGDF 10 Unmodified _GYDFGYDGDF_ 0 0 0 ENSG00000164692|ENST00000297268|COL1A2;ENST00000481570.5_1_7:94056869-94058766:+|nuORF ENSG00000164692|ENST00000297268|COL1A2 ENSG00000164692|ENST00000297268|COL1A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.767333984375 2 578.216911 1154.41927 0.70656 0.00040855 1.5224 0.00088025 2.2289 0.0012888 578.2180034628094 49.632 0.1851 49.632 49.51 49.695 0 14 7 2 0 0 0 0.23634 1 27353 27353 3.5965 3.1382 1 1527100 17927 7229 12451 12662 21090 21090 -0.15176300203643223 GYDGPIYM 8 Oxidation (M) _GYDGPIYM(Oxidation (M))_ GYDGPIYM(1) GYDGPIYM(60) 0 0 1 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000496353.1_1_1:1254237-1254918:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 931.3877563476562 1 931.386596 930.379319 0.73371 0.00068337 -0.1961 -0.00018265 0.53761 0.00050072 931.3865695468979 38.89 0.39012 38.89 38.725 39.115 0 30 17 3 0 0 0 0.2655 2 20748 20748;20859 59.795 45.214 1 2215900 17928 3985 12452 12663 21091;21092 21091 711 -0.08865518407924355 GYFETPFSF 9 Unmodified _GYFETPFSF_ 0 0 0 ENSG00000125386|ENST00000637812|FAM193A ENSG00000125386|ENST00000637812|FAM193A ENSG00000125386|ENST00000637812|FAM193A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7467041015625 2 547.745108 1093.47566 2.0168 0.0011047 0.36994 0.00020263 2.3867 0.0013073 547.7453460477944 94.513 0.37247 94.527 94.323 94.695 0.014244 29 13 3 0 0 0 0.078417 1 52517 52517 38.151 27.327 1 3202700 17929 3845 12453 12664 21093 21093 -0.06733627576318213 GYFGNPQKF 9 Unmodified _GYFGNPQKF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.260009765625 2 529.258717 1056.50288 0.41532 0.00021981 0.96529 0.00051089 1.3806 0.0007307 529.2591825298856 43.271 0.27503 43.271 43.143 43.418 0 31 13 3 0 0 0 0.010877 1 23467 23467 77.984 37.536 1 13619000 17930 748 12454 12665 21094 21094 -0.023110992452757273 GYFGNPQKF 9 Unmodified _GYFGNPQKF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2587280273438 2 529.258717 1056.50288 0.087978 4.6563E-05 0.029348 1.5533E-05 0.11733 6.2095E-05 529.2586754133067 43.506 0.29374 43.196 43.045 43.338 -0.31039 43 13 4 0 0 0 0.0021514 2 23101 23101;23202 131.3 99.181 1 201750000 17931 748 12454 12665 21095;21096 21095 -0.023110992452757273 GYFGNPQKF 9 Unmodified _GYFGNPQKF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.259521484375 2 529.258717 1056.50288 0.5058 0.0002677 -0.28155 -0.00014902 0.22425 0.00011869 529.2585467107212 43.187 0.28969 43.171 42.999 43.289 -0.015667 46 13 5 0 0 0 0.010877 2 23091 23091;23191 77.984 45.867 1 136070000 17932 748 12454 12665 21097;21098 21097 -0.023110992452757273 GYFGNPQKF 9 Unmodified _GYFGNPQKF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.25927734375 2 529.258717 1056.50288 0.99236 0.00052521 -0.12714 -6.7291E-05 0.86522 0.00045792 529.2587364577428 48.567 0.77841 43.17 42.825 43.604 -5.3961 131 41 5 0 0 0 0.0086179 3 30237 30108;30237;30368 89.427 48.978 1 1114800000 17933 748 12454 12665 21099;21100;21101 21100 -0.023110992452757273 GYFGNPQKF 9 Unmodified _GYFGNPQKF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1058.055786132812 1 1057.51016 1056.50288 0.80679 0.00085319 0.35662 0.00037713 1.1634 0.0012303 1057.510343206165 48.557 0.2776 43.161 42.996 43.273 -5.3961 27 16 2 0 0 0 3.1746E-15 1 30186 30186 187.93 149.78 1 21677000 17934 748 12454 12665 21102 21102 -0.023110992452757273 GYFKSKALI 9 Unmodified _GYFKSKALI_ 0 0 0 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MSMS AL20221201_MKP_PDAC_01 4 513.804443359375 2 513.80276 1025.59097 NaN NaN NaN NaN NaN NaN NaN 97.776 1 91.6 91.1 92.1 -6.1757 0 0 0 0.57317 1 64805 64805 13.508 4.1604 1 + 17935 17879 12455 12666 21103 21103 0.0791952134532039 GYFLVSYQLYG 11 Unmodified _GYFLVSYQLYG_ 0 0 0 REV__ENSG00000188869|ENST00000359440|TMC3 REV__ENSG00000188869|ENST00000359440|TMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.3274536132812 2 655.326796 1308.63904 -0.52596 -0.00034468 -0.62026 -0.00040647 -1.1462 -0.00075115 655.3266067227013 41.606 0.23143 41.606 41.499 41.731 0 29 11 3 0 0 0 0.37677 1 22426 22426 22.736 1.1993 1 11896000 + 17936 23739 12456 12667 21104 21104 -0.0029344952529299917 GYFLVSYQLYG 11 Unmodified _GYFLVSYQLYG_ 0 0 0 REV__ENSG00000188869|ENST00000359440|TMC3 REV__ENSG00000188869|ENST00000359440|TMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3259887695312 2 655.326796 1308.63904 1.1706 0.00076714 -0.45805 -0.00030018 0.71256 0.00046696 655.3267963613667 47.424 0.41981 42.19 42 42.42 -5.2339 49 24 3 0 0 0 0.48615 2 29383 29383;29519 17.113 0.96379 1 20454000 + 17937 23739 12456 12667 21105;21106 21105 -0.0029344952529299917 GYFLVSYQLYG 11 Unmodified _GYFLVSYQLYG_ 0 0 0 REV__ENSG00000188869|ENST00000359440|TMC3 REV__ENSG00000188869|ENST00000359440|TMC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 655.326796 1308.63904 -0.52596 -0.00034468 -0.62026 -0.00040647 -1.1462 -0.00075115 655.3266067227013 41.606 0.23143 41.606 41.499 41.731 0 -0.018035 0.00042353 NaN 22.736 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 11896000 + 17938 23739 12456 12667 -0.0029344952529299917 GYFVQPTVF 9 Unmodified _GYFVQPTVF_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2713012695312 2 529.271293 1056.52803 0.35168 0.00018613 0.07079 3.7467E-05 0.42247 0.0002236 529.2713651697728 78.476 0.33642 78.529 78.368 78.704 0.052452 23 13 2 0 0 0 0.10925 1 43320 43320 32.117 13.982 1 3699600 17939 7289 12457 12668 21107 21107 0.0020295555730172055 GYFVQPTVF 9 Unmodified _GYFVQPTVF_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MSMS AL20221201_MKP_PDAC_01 4 529.2709350585938 2 529.271293 1056.52803 NaN NaN NaN NaN NaN NaN NaN 86.482 1 80.307 79.807 80.807 -6.1757 0 0 0 0.11925 1 57014 57014 40.449 22.314 1 17940 7289 12457 12668 21108 21108 0.0020295555730172055 GYFVQPTVF 9 Unmodified _GYFVQPTVF_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MSMS AL20221201_MKP_PDAC_01 4 529.272216796875 2 529.271293 1056.52803 NaN NaN NaN NaN NaN NaN NaN 86.667 1 80.492 79.992 80.992 -6.1757 0 0 0 0.27711 1 57137 57137 26.341 9.399 1 17941 7289 12457 12668 21109 21109 0.0020295555730172055 GYGFVLYL 8 Unmodified _GYGFVLYL_ 0 0 0 REV__ENST00000497856.6_1_5:112228472-112256990:-|nuORF REV__ENST00000497856.6_1_5:112228472-112256990:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2503356933594 2 466.249829 930.485105 NaN NaN NaN NaN NaN NaN NaN 97.64 1 97.622 97.122 98.122 -0.018188 0 0 0 0.97444 1 54246 54246 0.79363 0 1 + 17942 19676 12458 12669 21110 21110 0.01708185499830961 GYGGGFGNF 9 Unmodified _GYGGGFGNF_ 0 0 0 ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.3687744140625 1 875.368244 874.360967 -0.2636 -0.00023075 0.061737 5.4042E-05 -0.20187 -0.00017671 875.3681272493228 56.235 0.37555 56.235 56.028 56.403 0 43 17 3 0 0 0 0.0094915 2 31210 31210;31317 81.864 22.069 1 17341000 17943 3103 12459 12670 21111;21112 21111 -0.08123892267622068 GYGGGFGNF 9 Unmodified _GYGGGFGNF_ 0 0 0 ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.188232421875 2 438.18776 874.360967 -0.14927 -6.5409E-05 -0.47157 -0.00020664 -0.62084 -0.00027205 438.18769892164255 56.261 0.31141 56.261 56.049 56.361 0 25 14 2 0 0 0 0.3554 1 31230 31230 14.582 1.0738 1 5811000 17944 3103 12459 12670 21113 21113 -0.08123892267622068 GYGGGFGNF 9 Unmodified _GYGGGFGNF_ 0 0 0 ENST00000481161.5_1_2:163200677-163213018:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF;ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF ENST00000481161.5_1_2:163200677-163213018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.1880187988281 2 438.18776 874.360967 -0.1399 -6.1303E-05 0.78572 0.00034429 0.64582 0.00028299 438.1880622120415 56.863 0.3332 56.378 56.17 56.503 -0.48554 36 15 3 0 0 0 0.16776 1 30851 30851 26.341 1.6674 1 5229600 17945 3103 12459 12670 21114 21114 -0.08123892267622068 GYGKFLIAF 9 Unmodified _GYGKFLIAF_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2840270996094 2 508.284203 1014.55385 0.4024 0.00020453 -1.6958 -0.00086193 -1.2934 -0.0006574 508.2823603787982 79.603 0.35295 79.658 79.468 79.821 0.05497 19 13 2 0 0 0 0.14602 1 44014 44014 28.487 6.7402 1 1674100 17946 2149 12460 12671 21115 21115 0.04715849799561056 GYGLACKEAVR 11 Unmodified _GYGLACKEAVR_ 0 0 0 ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENST00000412860.1_1_7:42834686-42835559:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2299499511719 3 389.537736 1165.59138 0.0068965 2.6864E-06 2.9399 0.0011452 2.9468 0.0011479 389.53865175907345 54.404 0.13749 54.337 54.243 54.38 -0.066936 9 6 2 0 0 0 0.29817 1 29496 29496 2.2527 1.0379 1 1954500 17947 12990 12461 12672 21116 21116 0.015205730028583275 GYGNDQTYFE 10 Unmodified _GYGNDQTYFE_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2365112304688 2 597.240918 1192.46728 -0.41897 -0.00025023 -4.0912 -0.0024434 -4.5102 -0.0026937 597.2385050517839 35.263 0.15221 35.263 35.19 35.342 0 12 7 2 0 0 0 0.63399 1 18644 18644 9.3831 1.2276 1 6164900 17948 2632 12462 12673 21117 21117 -0.12125226283592383 GYGSESGEEDF 11 Unmodified _GYGSESGEEDF_ 0 0 0 ENST00000565121.1_1_15:75645991-75646635:+|nuORF;ENST00000567393.5_1_15:75645991-75647372:+|nuORF;ENSG00000140398|ENST00000355059|NEIL1 ENST00000565121.1_1_15:75645991-75646635:+|nuORF;ENSG00000140398|ENST00000355059|NEIL1 ENST00000565121.1_1_15:75645991-75646635:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.72216796875 2 588.720015 1175.42548 NaN NaN NaN NaN NaN NaN NaN 62.103 1 62.103 61.603 62.603 0 0 0 0 0.94144 1 34631 34631 1.4819 0.68827 1 17949 15398;5231 12463 12674 21118 21118 -0.15521826762801538 GYGTDAIIYL 10 Unmodified _GYGTDAIIYL_ 0 0 0 ENSG00000004799|ENST00000005178|PDK4;ENST00000473796.1_1_7:95214955-95221973:-|nuORF;ENST00000468445.1_1_7:95216267-95216813:-|nuORF ENSG00000004799|ENST00000005178|PDK4 ENSG00000004799|ENST00000005178|PDK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2793579101562 2 543.279315 1084.54408 0.47313 0.00025704 1.0981 0.00059657 1.5712 0.00085361 543.2799788944695 73.418 0.14767 72.942 72.871 73.018 -0.47588 9 6 2 0 0 0 0.66569 1 40196 40196 6.7232 0.36906 1 685900 17950 283 12464 12675 21119 21119 0.005186170035130999 GYGVGHGL 8 Unmodified _GYGVGHGL_ 0 0 0 ENSG00000261272|ENST00000561890|MUC22 ENSG00000261272|ENST00000561890|MUC22 ENSG00000261272|ENST00000561890|MUC22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.1925048828125 2 380.192845 758.371138 NaN NaN NaN NaN NaN NaN NaN 22.606 1 22.629 22.129 23.129 0.022896 0 0 0 0.97444 1 11504 11504 0.79363 0 1 17951 10838 12465 12676 21120 21120 -0.01771284542394369 GYHDIVVTF 9 Unmodified _GYHDIVVTF_ 0 0 0 nc|ENSG00000125875|Q96BZ9-3|TBC1D20;ENSG00000125875|ENST00000354200|TBC1D20 nc|ENSG00000125875|Q96BZ9-3|TBC1D20 nc|ENSG00000125875|Q96BZ9-3|TBC1D20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.766845703125 2 525.766374 1049.5182 -0.43928 -0.00023096 0.86602 0.00045532 0.42674 0.00022436 525.7666013892178 61.199 0.22083 60.709 60.617 60.838 -0.48932 17 10 2 0 0 0 0.095405 2 33355 33303;33355 34.102 15.956 1 3130500 17952 3905 12466 12677 21121;21122 21122 -0.004582324481134492 GYHDIVVTF 9 Unmodified _GYHDIVVTF_ 0 0 0 nc|ENSG00000125875|Q96BZ9-3|TBC1D20;ENSG00000125875|ENST00000354200|TBC1D20 nc|ENSG00000125875|Q96BZ9-3|TBC1D20 nc|ENSG00000125875|Q96BZ9-3|TBC1D20 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 525.766374 1049.5182 0.77124 0.00040549 0.98901 0.00051999 1.7602 0.00092548 525.7672406614366 60.727 0.1861 60.727 60.625 60.811 0 0.0088622 8.4698E-05 NaN 34.102 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 763660 17953 3905 12466 12677 -0.004582324481134492 GYHHSSMY 8 Unmodified _GYHHSSMY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.198486328125 2 491.197802 980.381051 0.6107 0.00029998 1.2372 0.00060769 1.8479 0.00090766 491.19827595348784 68.474 0.39731 67.994 67.804 68.202 -0.48071 41 17 3 0 0 0 0.80624 1 37478 37478 2.8892 0.31174 1 5974800 17954 8967 12467 12678 21123 21123 -0.10992464599303275 GYHHSSMY 8 Unmodified _GYHHSSMY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 491.197802 980.381051 0.68588 0.0003369 1.625 0.00079818 2.3108 0.0011351 491.1986071793397 67.991 0.1868 68.016 67.877 68.064 0.025146 0.011336 0.00029025 NaN 2.8892 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2003800 17955 8967 12467 12678 -0.10992464599303275 GYHPTSVAEW 10 Unmodified _GYHPTSVAEW_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;ENST00000552245.5_1_12:99225710-99548222:-|nuORF;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B;nc|ENSG00000185046|Q7Z6G8-8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7655029296875 2 573.764363 1145.51417 0.37042 0.00021254 0.36006 0.00020659 0.73049 0.00041913 573.7645196110477 48.511 0.94551 48.467 47.864 48.81 -0.04369 67 47 2 0 0 0 0.69064 1 25996 25996 3.9444 1.6417 1 50292000 17956 9324 12468 12679 21124 21124 -0.05276321941801143 GYIEDLKKF 9 Unmodified _GYIEDLKKF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8033447265625 2 556.802957 1111.59136 -0.33299 -0.00018541 1.2331 0.0006866 0.90011 0.00050119 556.8038518459829 48.649 0.18381 48.649 48.511 48.695 0 11 8 2 0 0 0 0.20507 1 26720 26720 24.021 10.513 1 4524700 17957 1007 12469 12680 21125 21125 0.040028962745282115 GYIEDLKKF 9 Unmodified _GYIEDLKKF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8057861328125 2 556.802957 1111.59136 0.54719 0.00030468 1.3921 0.00077512 1.9393 0.0010798 556.803795700112 48.944 0.31388 48.573 48.464 48.778 -0.37172 39 15 3 0 0 0 0.015688 1 26273 26273 65.235 43.488 1 6470700 17958 1007 12469 12680 21126 21126 0.040028962745282115 GYIEDLKKF 9 Unmodified _GYIEDLKKF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.5379028320312 3 371.53773 1111.59136 0.30713 0.00011411 0.43136 0.00016027 0.73849 0.00027438 371.5379445761521 48.927 0.37067 48.555 48.407 48.778 -0.37172 52 18 4 0 0 0 0.076472 1 26277 26277 38.615 23.658 1 23678000 17959 1007 12469 12680 21127 21127 0.040028962745282115 GYIEDLKKF 9 Unmodified _GYIEDLKKF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.943603515625 2 556.802957 1111.59136 0.54507 0.0003035 2.2142 0.0012329 2.7592 0.0015363 557.3059408724298 48.617 0.15844 48.573 48.516 48.674 -0.04369 13 7 2 0 0 0 0.20528 1 26287 26287 8.5933 0.68312 1 1315100 17960 1007 12469 12680 21128 21128 0.040028962745282115 GYIEDLKKF 9 Unmodified _GYIEDLKKF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.5381164550781 3 371.53773 1111.59136 1.7322 0.00064356 -0.975 -0.00036225 0.75717 0.00028132 371.53748193297776 54.356 0.41627 48.491 48.266 48.682 -5.8653 59 25 3 0 0 0 0.076472 2 34418 34418;34566 38.615 18.989 1 40898000 17961 1007 12469 12680 21129;21130 21129 0.040028962745282115 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8089599609375 2 544.808574 1087.60259 0.37279 0.0002031 0.32013 0.00017441 0.69292 0.00037751 544.808773312634 51.613 0.34588 51.613 51.431 51.777 0 56 15 4 0 0 0 0.0085164 2 28469 28469;28587 99.799 69.162 1 71143000 17962 7182 12470 12681 21131;21132 21131 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8089599609375 2 544.808574 1087.60259 0.27136 0.00014784 0.28444 0.00015497 0.5558 0.00030281 544.8086080994483 52.092 0.46756 51.659 51.474 51.942 -0.43367 101 23 6 0 0 0 0.012668 2 28171 28066;28171 72.968 43.886 1 162310000 17963 7182 12470 12681 21133;21134 21134 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8093872070312 2 544.808574 1087.60259 0.14029 7.6432E-05 0.81772 0.0004455 0.95801 0.00052193 544.808865988266 51.791 0.47367 51.732 51.553 52.027 -0.058918 69 22 4 0 0 0 0.0085164 2 27998 27998;28097 99.799 63.672 1 18139000 17964 7182 12470 12681 21135;21136 21135 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8087768554688 2 544.808574 1087.60259 0.17614 9.5962E-05 0.56709 0.00030895 0.74323 0.00040492 544.8088219471609 57.947 0.64612 51.92 51.619 52.265 -6.0275 112 36 4 0 0 0 0.0086722 3 37085 36950;37085;37211 88.954 52.827 1 490370000 17965 7182 12470 12681 21137;21138;21139 21138 0.062297183686723656 GYIERPQLI 9 Unmodified _GYIERPQLI_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8090209960938 2 544.808574 1087.60259 1.2836 0.00069933 -0.14017 -7.6364E-05 1.1435 0.00062297 544.8084039146261 58.487 0.61728 52.412 52.218 52.835 -6.0745 65 33 2 0 0 0 0.014417 2 37583 37458;37583 69.105 40.023 1 55532000 17966 7182 12470 12681 21140;21141 21141 0.062297183686723656 GYIESVQHI 9 Unmodified _GYIESVQHI_ 0 0 0 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2696533203125 2 523.269281 1044.52401 1.0621 0.00055578 -0.72385 -0.00037877 0.33828 0.00017701 523.268968958898 42.878 0.34406 42.878 42.682 43.026 0 55 17 4 0 0 0 0.022193 2 23203 23203;23325 61.357 32.871 1 114940000 17967 3903 12471 12682 21142;21143 21142 0.0035286606357658457 GYIESVQHI 9 Unmodified _GYIESVQHI_ 0 0 0 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2693481445312 2 523.269281 1044.52401 NaN NaN NaN NaN NaN NaN NaN 43.154 1 42.844 42.344 43.344 -0.31039 0 0 0 0.04157 1 22949 22949 61.357 25.313 1 17968 3903 12471 12682 21144 21144 0.0035286606357658457 GYIESVQHI 9 Unmodified _GYIESVQHI_ 0 0 0 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2706298828125 2 523.269281 1044.52401 0.78128 0.00040882 -0.067103 -3.5113E-05 0.71418 0.00037371 523.2692310809755 48.865 0.48754 43.469 43.203 43.691 -5.3961 61 29 3 0 0 0 0.0082281 2 30375 30375;30493 92.822 39.247 1 197760000 17969 3903 12471 12682 21145;21146 21145 0.0035286606357658457 GYIESVQHI 9 Unmodified _GYIESVQHI_ 0 0 0 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 ENSG00000125871|ENST00000377710|MGME1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.269281 1044.52401 0.52008 0.00027214 0.82526 0.00043184 1.3453 0.00070398 523.2699691015284 42.781 0.10387 42.772 42.705 42.809 -0.0088234 -0.052947 0.0015432 NaN 61.357 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1296100 17970 3903 12471 12682 0.0035286606357658457 GYIFKGDT 8 Unmodified _GYIFKGDT_ 0 0 0 REV__ENST00000454070.2_1_1:101736433-101736811:-|nuORF REV__ENST00000454070.2_1_1:101736433-101736811:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.7265319824219 2 450.726718 899.438883 NaN NaN NaN NaN NaN NaN NaN 23.876 1 21.049 20.549 21.549 -2.8273 0 0 0 0.94061 1 12950 12950 12.532 3.1841 1 + 17971 27235 12472 12683 21147 21147 -0.01485879402230239 GYIKGIFGF 9 Unmodified _GYIKGIFGF_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2779846191406 2 501.276378 1000.5382 0.33189 0.00016637 2.888 0.0014477 3.2199 0.001614 501.27772936595267 78.423 0.32481 78.476 78.276 78.601 0.052452 39 13 4 0 0 0 0.026094 1 43311 43311 57.471 34.323 1 17748000 17972 7679 12473 12684 21148 21148 0.037955632825287466 GYIKGIFGF 9 Unmodified _GYIKGIFGF_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2770080566406 2 501.276378 1000.5382 1.5282 0.00076603 -0.31674 -0.00015877 1.2114 0.00060726 501.2761006360734 98.144 0.17985 91.968 91.862 92.042 -6.1757 34 11 4 0 0 0 0.0090851 1 65032 65032 85.357 47.206 1 105730000 17973 7679 12473 12684 21149 21149 0.037955632825287466 GYIKNKLVF 9 Unmodified _GYIKNKLVF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8251953125 2 541.32386 1080.63317 0.50747 0.0002747 0.28054 0.00015186 0.788 0.00042657 541.3240433276212 49.022 0.22534 43.626 43.505 43.731 -5.3961 19 14 2 0 0 0 0.010818 1 30535 30535 78.149 38.192 1 42493000 17974 7010 12474 12685 21150 21150 0.09607496753687883 GYINSHITI 9 Unmodified _GYINSHITI_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2723388671875 2 509.271824 1016.5291 0.73305 0.00037332 -0.029326 -1.4935E-05 0.70373 0.00035839 509.2713270322146 49.547 0.18763 49.547 49.441 49.629 0 14 7 3 0 0 0 0.025842 1 27296 27296 57.722 33.701 1 2582600 17975 7133 12475 12686 21151 21151 0.02149169926178729 GYINSHITI 9 Unmodified _GYINSHITI_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2734375 2 509.271824 1016.5291 0.353 0.00017978 0.21471 0.00010935 0.56772 0.00028912 509.27210825425215 56.78 0.35851 50.804 50.599 50.957 -5.9769 30 20 2 0 0 0 0.070838 1 36332 36332 39.957 18.211 1 33527000 17976 7133 12475 12686 21152 21152 0.02149169926178729 GYINSHITI 9 Unmodified _GYINSHITI_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.271824 1016.5291 0.55359 0.00028193 0.50633 0.00025786 1.0599 0.00053979 509.2722051394982 50.705 0.20005 50.705 50.582 50.782 0 -0.057973 -0.00015218 NaN 39.957 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 7137400 17977 7133 12475 12686 0.02149169926178729 GYIRGSWQF 9 Unmodified _GYIRGSWQF_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.278564453125 2 557.277441 1112.54033 0.97961 0.00054591 -0.40378 -0.00022501 0.57584 0.0003209 557.277295471092 56.973 0.33566 56.905 56.74 57.075 -0.068737 36 16 3 0 0 0 0.036857 1 30984 30984 51.63 30.093 1 27306000 17978 4287 12476 12687 21153 21153 -0.01144007979678463 GYIRGSWQF 9 Unmodified _GYIRGSWQF_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2778930664062 2 557.277441 1112.54033 1.7284 0.00096322 2.2685 0.0012642 3.997 0.0022274 557.2789127686696 62.454 0.51888 56.278 56.104 56.623 -6.1757 50 26 3 0 0 0 0.017075 2 40256 40256;40399 66.457 32.354 1 39803000 17979 4287 12476 12687 21154;21155 21154 -0.01144007979678463 GYISEVRNF 9 Unmodified _GYISEVRNF_ 0 0 0 ENSG00000175104|ENST00000526995|TRAF6;ENST00000429404.1_1_10:60896824-60897136:-|nuORF ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7747802734375 2 542.774731 1083.53491 0.45688 0.00024798 -0.11958 -6.4904E-05 0.3373 0.00018308 542.7746658391219 46.595 0.21735 46.595 46.501 46.718 0 20 9 3 0 0 0 0.14 1 25520 25520 29.082 9.6426 1 3077200 17980 8484 12477 12688 21156 21156 -0.0035173156215932977 GYISEVRNF 9 Unmodified _GYISEVRNF_ 0 0 0 ENSG00000175104|ENST00000526995|TRAF6;ENST00000429404.1_1_10:60896824-60897136:-|nuORF ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7733154296875 2 542.774731 1083.53491 NaN NaN NaN NaN NaN NaN NaN 46.948 1 46.611 46.111 47.111 -0.33664 0 0 0 0.43483 1 25149 25149 18.146 7.3224 1 17981 8484 12477 12688 21157 21157 -0.0035173156215932977 GYKENYTRW 9 Unmodified _GYKENYTRW_ 0 0 0 ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.2943115234375 2 608.790912 1215.56727 0.33686 0.00020508 -1.0996 -0.00066941 -0.76272 -0.00046433 608.7902151399242 74.079 0.5806 74.079 73.713 74.294 0 62 26 4 0 0 0 0.58145 1 41149 41149 1.8442 1.3859 1 3131600 17982 3022 12478 12689 21158 21158 -0.03188944159160201 GYKFLHFA 8 Unmodified _GYKFLHFA_ 0 0 0 REV__GRB7|p.R334H|1|0.2|ENSG00000141738|chr17:39744974-39744974|G/A|missense_variant REV__GRB7|p.R334H|1|0.2|ENSG00000141738|chr17:39744974-39744974|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7628173828125 2 491.760895 981.507237 -0.23595 -0.00011603 1.1135 0.00054757 0.87753 0.00043154 491.7610420380892 48.378 0.44471 48.378 48.193 48.638 0 48 21 3 0 0 0 0.65867 1 26488 26488 20.871 3.7847 1 40378000 + 17983 29356 12479 12690 21159 21159 0.015744099682706292 GYKNVLISSI 10 Unmodified _GYKNVLISSI_ 0 0 0 REV__nc|ENSG00000155380|P53985-2|SLC16A1 REV__nc|ENSG00000155380|P53985-2|SLC16A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.29052734375 2 547.316232 1092.61791 0.30206 0.00016532 -1.2271 -0.00067164 -0.92509 -0.00050632 547.3149815512085 69.73 0.19995 69.761 69.646 69.846 0.030914 15 9 2 0 0 0 0.13273 1 38344 38344 38.176 1.6694 1 2476100 + 17984 21269 12480 12691 21160 21160 0.07530585165864068 GYKPDFVGF 9 Unmodified _GYKPDFVGF_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2556762695312 2 515.255643 1028.49673 -0.020077 -1.0345E-05 -1.0981 -0.00056581 -1.1182 -0.00057615 515.255333392859 60.275 0.43472 59.784 59.652 60.087 -0.49079 45 21 3 0 0 0 0.20428 1 32827 32827 22.736 1.8651 1 13363000 17985 7379 12481 12692 21161 21161 -0.01637617476808373 GYKPDFVGF 9 Unmodified _GYKPDFVGF_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2543334960938 2 515.255643 1028.49673 0.45798 0.00023598 0.032369 1.6679E-05 0.49035 0.00025265 515.2556004773271 59.919 0.18435 59.866 59.734 59.918 -0.053062 15 8 2 0 0 0 0.25681 1 32691 32691 19.257 2.3147 1 2187800 17986 7379 12481 12692 21162 21162 -0.01637617476808373 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2554931640625 2 491.255643 980.496732 NaN NaN NaN NaN NaN NaN NaN 48.428 1 48.428 47.928 48.928 0 0 0 0 0.10759 1 26570 26570 41.84 16.44 1 17987 4946 12482 12693 21163 21163 0.005703825231876181 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.256591796875 2 491.255643 980.496732 NaN NaN NaN NaN NaN NaN NaN 48.625 1 48.625 48.125 49.125 0 0 0 0 0.6032 1 26694 26694 12.532 0 1 17988 4946 12482 12693 21164 21164 0.005703825231876181 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.255126953125 2 491.255643 980.496732 0.46118 0.00022656 -0.6339 -0.00031141 -0.17273 -8.4852E-05 491.2549699425297 48.74 0.32018 48.369 48.258 48.578 -0.37172 42 17 3 0 0 0 0.032796 2 26152 26152;26270 53.833 23.608 1 10891000 17989 4946 12482 12693 21165;21166 21165 0.005703825231876181 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2555236816406 2 491.255643 980.496732 0.63944 0.00031413 1.7903 0.00087952 2.4298 0.0011936 491.2569110739878 48.474 0.27269 48.43 48.3 48.573 -0.04369 21 13 2 0 0 0 0.028475 1 26160 26160 56.177 27.69 1 1499900 17990 4946 12482 12693 21167 21167 0.005703825231876181 GYLADPAKF 9 Unmodified _GYLADPAKF_ 0 0 0 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 ENSG00000137547|ENST00000260102|MRPL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2543029785156 2 491.255643 980.496732 0.72329 0.00035532 -0.68067 -0.00033438 0.042619 2.0937E-05 491.2556601544894 54.625 0.70589 48.76 48.591 49.296 -5.8653 68 43 2 0 0 0 0.06294 2 34614 34614;34748 41.84 23.705 1 129800000 17991 4946 12482 12693 21168;21169 21168 0.005703825231876181 GYLFISPESF 10 Unmodified _GYLFISPESF_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2876586914062 2 580.28714 1158.55973 0.52974 0.0003074 0.23679 0.00013741 0.76654 0.00044481 580.2876544186238 71.632 0.7328 71.155 70.792 71.525 -0.47609 94 29 5 0 0 0 0.14917 2 39245 39142;39245 39.957 13.074 1 12098000 + 17992 22909 12483 12694 21170;21171 21171 -0.013210964794325264 GYLFISPESF 10 Unmodified _GYLFISPESF_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2874145507812 2 580.28714 1158.55973 0.59257 0.00034386 -1.0123 -0.0005874 -0.41969 -0.00024354 580.2858522932835 72.146 0.55082 71.67 71.469 72.02 -0.4761 47 24 3 0 0 0 0.44373 1 39549 39549 19.257 3.4098 1 2561600 + 17993 22909 12483 12694 21172 21172 -0.013210964794325264 GYLFISPESF 10 Unmodified _GYLFISPESF_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2894287109375 2 580.28714 1158.55973 1.61 0.00093424 2.5334 0.0014701 4.1434 0.0024043 580.2886442821543 71.038 0.4453 71.073 70.958 71.403 0.035507 32 19 3 0 0 0 0.14917 1 39128 39128 39.957 18.211 1 2603000 + 17994 22909 12483 12694 21173 21173 -0.013210964794325264 GYLFISPESF 10 Unmodified _GYLFISPESF_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 580.28714 1158.55973 -0.16985 -9.8561E-05 -0.13685 -7.9414E-05 -0.3067 -0.00017797 580.2870618918827 71.243 0.32185 71.243 71.041 71.363 0 0.085784 -0.00088949 NaN 39.957 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 737240 + 17995 22909 12483 12694 -0.013210964794325264 GYLFPDNWHI 10 Unmodified _GYLFPDNWHI_ 0 0 0 REV__ENST00000542527.6_1_16:22086835-22092068:+|nuORF REV__ENST00000542527.6_1_16:22086835-22092068:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5401000976562 3 421.204862 1260.59276 0.044499 1.8743E-05 0.99179 0.00041774 1.0363 0.00043649 421.2053570116042 18.595 0.11961 18.601 18.563 18.683 0.0060463 11 6 2 0 0 0 0.69377 1 9435 9435 1.7423 0 1 700810 + 17996 28617 12484 12695 21174 21174 -0.027114696367334545 GYLGQVTTI 9 Unmodified _GYLGQVTTI_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2611999511719 2 476.260925 950.507297 0.37016 0.00017629 -0.21129 -0.00010063 0.15887 7.5662E-05 476.26100769659865 59.251 0.28434 59.251 59.045 59.329 0 22 11 3 0 0 0 0.18465 1 32961 32961 24.674 2.9272 1 5670000 17997 3940 12485 12696 21175 21175 0.030063651776117695 GYLGQVTTI 9 Unmodified _GYLGQVTTI_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.5138549804688 1 951.514573 950.507297 -0.17486 -0.00016638 -2.7222 -0.0025903 -2.8971 -0.0027566 951.514716943545 59.215 0.20656 59.215 59.123 59.329 0 13 8 2 0 0 0 0.12841 1 32968 32968 30.225 10.786 1 1319000 17998 3940 12485 12696 21176 21176 0.030063651776117695 GYLGQVTTI 9 Unmodified _GYLGQVTTI_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 476.5812377929688 2 476.260925 950.507297 0.8194 0.00039025 0.19735 9.3988E-05 1.0167 0.00048424 476.2610247850456 67.319 0.4277 61.144 60.808 61.236 -6.1757 31 23 2 0 0 0 0.11012 1 43835 43835 36.044 20.197 1 13077000 17999 3940 12485 12696 21177 21177 0.030063651776117695 GYLGQVTTI 9 Unmodified _GYLGQVTTI_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 476.260925 950.507297 0.39088 0.00018616 0.13052 6.2159E-05 0.5214 0.00024832 476.26106705569 59.794 0.2579 59.303 59.171 59.429 -0.49079 0.026187 7.3715E-05 NaN 24.674 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4158000 18000 3940 12485 12696 0.030063651776117695 GYLIIEEDFN 10 Unmodified _GYLIIEEDFN_ 0 0 0 ENSG00000088766|ENST00000378863|CRLS1;nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENST00000489345.5_1_20:5990447-6004030:+|nuORF;ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENSG00000088766|ENST00000378863|CRLS1;ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENSG00000088766|ENST00000378863|CRLS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7923583984375 2 606.792786 1211.57102 -0.25905 -0.00015719 -0.82972 -0.00050347 -1.0888 -0.00066066 606.792199228814 32.88 0.14265 32.721 32.645 32.787 -0.15918 9 5 2 0 0 0 0.69064 1 17159 17159 3.9444 0 1 1511000 18001 1495;15876 12486 12697 21178 21178 -0.026303191759552647 GYLPLAHVL 9 Unmodified _GYLPLAHVL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.788818359375 2 491.789653 981.564752 0.87601 0.00043081 -1.0478 -0.00051528 -0.17174 -8.4462E-05 491.789132526945 73.935 0.33871 73.459 73.299 73.638 -0.47588 28 16 2 0 0 0 0.22317 1 40417 40417 20.871 6.2895 1 1991500 18002 977;3739 12487 12698 21179 21179 0.07323252173853234 GYLPLAHVL 9 Unmodified _GYLPLAHVL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7906188964844 2 491.789653 981.564752 0.49532 0.00024359 1.3306 0.00065437 1.8259 0.00089797 491.79023287676523 73.336 0.33801 73.38 73.207 73.545 0.043983 36 14 3 0 0 0 0.028712 2 40376 40376;40486 56.048 35.177 1 5053700 18003 977;3739 12487 12698 21180;21181 21180 0.07323252173853234 GYLPLAHVL 9 Unmodified _GYLPLAHVL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7893371582031 2 491.789653 981.564752 0.4698 0.00023104 -0.095241 -4.6839E-05 0.37456 0.0001842 491.78937690996406 92.864 0.55624 86.688 86.331 86.887 -6.1757 45 34 2 0 0 0 0.028712 2 61380 61249;61380 56.048 27.875 1 15615000 18004 977;3739 12487 12698 21182;21183 21183 0.07323252173853234 GYLPNQLFRTF 11 Unmodified _GYLPNQLFRTF_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.35888671875 2 678.358962 1354.70337 1.1654 0.00079055 0.26718 0.00018124 1.4326 0.00097179 678.3590189665814 81.054 0.47729 81.114 80.866 81.343 0.059929 63 18 4 0 0 0 0.0086238 2 44736 44736;44841 69.338 55.432 1 44124000 18005 1284 12488 12699 21184;21185 21184 0.040207503515148346 GYLPNQLFRTF 11 Unmodified _GYLPNQLFRTF_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.361083984375 2 678.358962 1354.70337 NaN NaN NaN NaN NaN NaN NaN 81.29 1 81.35 80.85 81.85 0.059929 0 0 0 0.79773 1 44952 44952 12.175 8.5783 1 18006 1284 12488 12699 21186 21186 0.040207503515148346 GYLPNQLFRTF 11 Unmodified _GYLPNQLFRTF_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.3590698242188 2 678.358962 1354.70337 1.4123 0.00095805 -0.52975 -0.00035936 0.88255 0.00059869 678.3586620928421 96.391 0.482 90.215 90.041 90.523 -6.1757 95 28 5 0 0 0 5.0591E-09 2 63811 63811;63934 114.19 98.037 1 303030000 18007 1284 12488 12699 21187;21188 21187 0.040207503515148346 GYLRLQLCF 9 Unmodified _GYLRLQLCF_ 0 0 0 REV__ENST00000494463.1_1_1:160606951-160616738:-|nuORF REV__ENST00000494463.1_1_1:160606951-160616738:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8030395507812 2 556.799694 1111.58484 0.87658 0.00048808 0.43933 0.00024462 1.3159 0.0007327 557.2995068862197 66.095 0.7046 59.919 59.525 60.23 -6.1757 63 40 2 0 0 0 0.2001 1 42911 42911 23.148 3.8914 1 31138000 + 18008 27935 12489 12700 21189 21189 0.03350679842151294 GYLRSVFAL 9 Unmodified _GYLRSVFAL_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2936401367188 2 513.292559 1024.57057 1.0209 0.000524 -2.312 -0.0011868 -1.2912 -0.00066275 513.2917551790626 71.538 0.54877 71.577 71.344 71.893 0.039024 40 25 2 0 0 0 0.032796 1 39368 39368 53.833 28.433 1 17249000 18009 1507;13254 12490 12701 21190 21190 0.05926350685513171 GYLRSVFAL 9 Unmodified _GYLRSVFAL_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENST00000431036.1_1_22:45298215-45298323:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.292236328125 2 513.292559 1024.57057 1.1309 0.00058049 -0.12965 -6.655E-05 1.0013 0.00051394 513.2927168184871 97.836 0.16197 91.661 91.587 91.749 -6.1757 24 10 3 0 0 0 0.062454 1 64820 64820 41.956 17.282 1 114530000 18010 1507;13254 12490 12701 21191 21191 0.05926350685513171 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8753967285156 3 421.874959 1262.60305 -0.50932 -0.00021487 1.5332 0.00064683 1.0239 0.00043195 421.8755445443478 35.109 0.1924 35.109 35.016 35.209 0 22 9 3 0 0 0 0.58219 1 18560 18560 6.6235 0.3891 1 3671600 + 18011 22663 12491 12702 21192 21192 -0.01774951492825494 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.8753051757812 3 421.874959 1262.60305 -0.36852 -0.00015547 1.4278 0.00060235 1.0593 0.00044688 421.8755610944651 35.265 0.32792 35.043 34.873 35.201 -0.2224 37 14 4 0 0 0 0.28407 1 18442 18442 17.049 0.77403 1 8138600 + 18012 22663 12491 12702 21193 21193 -0.01774951492825494 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8759155273438 3 421.874959 1262.60305 1.1054 0.00046634 1.1999 0.00050619 2.3053 0.00097254 421.87541951757504 39.071 0.35284 34.62 34.414 34.766 -4.4509 54 22 3 0 0 0 0.28407 2 23175 23044;23175 17.049 1.3199 1 30297000 + 18013 22663 12491 12702 21194;21195 21195 -0.01774951492825494 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 421.874959 1262.60305 -0.50932 -0.00021487 1.5332 0.00064683 1.0239 0.00043195 421.8755445443478 35.109 0.1924 35.109 35.016 35.209 0 0.035715 6.5227E-05 NaN 17.049 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3671600 + 18014 22663 12491 12702 -0.01774951492825494 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 421.874959 1262.60305 -0.36852 -0.00015547 1.4278 0.00060235 1.0593 0.00044688 421.8755610944651 35.265 0.32792 35.043 34.873 35.201 -0.2224 -0.030024 -6.8186E-05 NaN 17.049 37 14 4 NaN NaN NaN NaN 0 NaN NaN 0 8138600 + 18015 22663 12491 12702 -0.01774951492825494 GYLSEPQLDEI 11 Unmodified _GYLSEPQLDEI_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 421.874959 1262.60305 -0.019047 -8.0355E-06 1.8983 0.00080085 1.8793 0.00079282 421.87589277259883 35.04 0.12579 35.067 34.996 35.122 0.027401 -0.0056914 0.00052731 NaN 17.049 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 641530 + 18016 22663 12491 12702 -0.01774951492825494 GYLSYMDDAF 10 Unmodified _GYLSYMDDAF_ 0 0 0 REV__nc|ENSG00000182220|O75787-2|ATP6AP2 REV__nc|ENSG00000182220|O75787-2|ATP6AP2 MSMS AL20221201_MKP_PDAC_01 4 591.242919921875 2 591.244615 1180.47468 NaN NaN NaN NaN NaN NaN NaN 60.633 1 54.485 53.985 54.985 -6.1478 0 0 0 0.71851 1 39021 39021 15.847 3.6065 1 + 18017 23251 12492 12703 21196 21196 -0.10834210007556067 GYLTEAEKF 9 Unmodified _GYLTEAEKF_ 0 0 0 nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2640991210938 2 529.263665 1056.51278 0.42904 0.00022708 0.35965 0.00019035 0.7887 0.00041743 529.2640696727597 47.2 0.66617 47.2 46.718 47.384 0 71 31 4 0 0 0 0.026499 1 25814 25814 71.922 45.581 1 28317000 18018 5612 12493 12704 21197 21197 -0.013219560305742561 GYLTEAEKF 9 Unmodified _GYLTEAEKF_ 0 0 0 nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2664184570312 2 529.263665 1056.51278 0.5846 0.00030941 2.1779 0.0011527 2.7625 0.0014621 529.2653717242055 53.279 0.29905 47.475 47.318 47.617 -5.8042 28 18 2 0 0 0 0.060956 1 33648 33648 53.833 36.89 1 39453000 18019 5612 12493 12704 21198 21198 -0.013219560305742561 GYMADKKKGY 10 Unmodified _GYMADKKKGY_ 0 0 0 REV__ENSG00000180071|ENST00000399703|ANKRD18A REV__ENSG00000180071|ENST00000399703|ANKRD18A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.789306640625 2 580.792066 1159.56958 NaN NaN NaN NaN NaN NaN NaN 91.4 1 90.905 90.405 91.405 -0.49457 0 0 0 0.96627 1 49959 49959 4.3292 2.0265 1 + 18020 23136 12494 12705 21199 21199 -0.0038223174569793628 GYMDQIIEY 9 Unmodified _GYMDQIIEY_ 0 0 0 nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1 nc|ENSG00000185920|Q13635-4|PTCH1 nc|ENSG00000185920|Q13635-4|PTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.254638671875 2 566.254982 1130.49541 0.48998 0.00027746 0.97779 0.00055368 1.4678 0.00083113 566.2553251433977 55.203 0.35761 54.725 54.548 54.905 -0.47798 38 16 3 0 0 0 0.39863 1 30015 30015 12.532 4.6214 1 5461200 18021 9429 12495 12706 21200 21200 -0.06461619627862092 GYMEGYYTF 9 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ GYM(1)EGYYTF GYM(44)EGYYTF 0 0 1 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.725341796875 2 573.726058 1145.43756 0.40677 0.00023338 -0.60846 -0.00034909 -0.20168 -0.00011571 573.7259267459652 56.78 0.52362 56.78 56.474 56.998 0 73 22 4 0 0 0 0.052168 2 31477 31477;31586 44.407 33.583 1 19090000 18022 2720 12496 12707 21201;21202 21201 471 -0.12933881553317406 GYMEGYYTF 9 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ GYM(1)EGYYTF GYM(44)EGYYTF 0 0 1 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7264404296875 2 573.726058 1145.43756 0.62655 0.00035947 -0.65313 -0.00037472 -0.026583 -1.5251E-05 573.725707770168 57.444 0.43705 56.954 56.729 57.166 -0.48974 51 20 4 0 0 0 0.052168 2 31161 31161;31265 44.407 33.583 1 9001600 18023 2720 12496 12707 21203;21204 21203 471 -0.12933881553317406 GYMEGYYTF 9 Oxidation (M) _GYM(Oxidation (M))EGYYTF_ GYM(1)EGYYTF GYM(54)EGYYTF 0 0 1 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7272338867188 2 573.726058 1145.43756 1.4919 0.00085596 0.025462 1.4608E-05 1.5174 0.00087057 573.7261348415698 64.437 0.57404 58.261 57.935 58.509 -6.1757 76 30 3 0 0 0 0.03327 2 41664 41664;41795 53.576 38.737 1 43958000 18024 2720 12496 12707 21205;21206 21205 471 -0.12933881553317406 GYMEGYYTF 9 Unmodified _GYMEGYYTF_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7283325195312 2 565.7286 1129.44265 0.72463 0.00040994 0.6839 0.0003869 1.4085 0.00079685 565.7284457764433 67.634 0.18013 67.152 67.075 67.255 -0.48218 13 7 2 0 0 0 0.48152 1 36979 36979 8.5933 0 1 942630 18025 2720 12496 12708 21207 21207 -0.11689577690708575 GYMEGYYTF 9 Unmodified _GYMEGYYTF_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7285766601562 2 565.7286 1129.44265 1.1853 0.00067054 -0.054719 -3.0956E-05 1.1306 0.00063959 565.728506087245 74.565 0.54547 68.39 68.079 68.624 -6.1757 72 28 3 0 0 0 0.052168 3 48703 48585;48703;48831 44.407 35.024 1 31516000 18026 2720 12496 12708 21208;21209;21210 21209 -0.11689577690708575 GYMPRQYSL 9 Oxidation (M) _GYM(Oxidation (M))PRQYSL_ GYM(1)PRQYSL GYM(100)PRQYSL 0 0 1 ENSG00000100983|ENST00000651619|GSS;nc|ENSG00000100983|P48637-2|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.768798828125 2 565.768591 1129.52263 0.36401 0.00020594 -0.48137 -0.00027234 -0.11736 -6.6399E-05 565.7685134709325 36.013 0.41718 36.013 35.713 36.131 0 59 20 4 0 0 0 0.0087873 2 18996 18996;19109 103.35 59.581 1 25927000 18027 1898 12497 12709 21211;21212 21211 316 -0.03695091296845021 GYMPRQYSL 9 Oxidation (M) _GYM(Oxidation (M))PRQYSL_ GYM(1)PRQYSL GYM(82)PRQYSL 0 0 1 ENSG00000100983|ENST00000651619|GSS;nc|ENSG00000100983|P48637-2|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.769775390625 2 565.768591 1129.52263 -0.33309 -0.00018845 0.92937 0.00052581 0.59628 0.00033735 565.7691906609159 36.24 0.346 35.99 35.786 36.132 -0.2497 47 15 4 0 0 0 0.009483 2 19036 18930;19036 81.89 54.261 1 20348000 18028 1898 12497 12709 21213;21214 21214 316 -0.03695091296845021 GYMPRQYSL 9 Oxidation (M) _GYM(Oxidation (M))PRQYSL_ GYM(1)PRQYSL GYM(46)PRQYSL 0 0 1 ENSG00000100983|ENST00000651619|GSS;nc|ENSG00000100983|P48637-2|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2694702148438 2 565.768591 1129.52263 0.14667 8.2979E-05 -0.22546 -0.00012756 -0.078792 -4.4578E-05 565.7685757922609 35.888 0.26743 35.913 35.744 36.012 0.024971 29 12 3 0 0 0 0.047196 1 18955 18955 46.021 26.764 1 4910500 18029 1898 12497 12709 21215 21215 316 -0.03695091296845021 GYMPRQYSL 9 Oxidation (M) _GYM(Oxidation (M))PRQYSL_ GYM(1)PRQYSL GYM(89)PRQYSL 0 0 1 ENSG00000100983|ENST00000651619|GSS;nc|ENSG00000100983|P48637-2|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7689208984375 2 565.768591 1129.52263 0.51037 0.00028875 -0.72508 -0.00041023 -0.21472 -0.00012148 565.7683017927404 40.14 0.55494 35.611 35.416 35.971 -4.5294 101 45 3 0 0 0 0.0086722 3 23990 23851;23990;24119 88.954 62.07 1 67081000 18030 1898 12497 12709 21216;21217;21218 21217 316 -0.03695091296845021 GYMPRQYSL 9 Oxidation (M) _GYM(Oxidation (M))PRQYSL_ 0 0 1 ENSG00000100983|ENST00000651619|GSS;nc|ENSG00000100983|P48637-2|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 565.768591 1129.52263 0.82685 0.0004678 -1.0636 -0.00060175 -0.23675 -0.00013394 565.76843544296 40.536 0.092758 36.006 35.971 36.064 -4.5294 0.025683 -0.0012954 NaN 103.35 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 5095300 18031 1898 12497 12709 316 -0.03695091296845021 GYMPYLNRF 9 Oxidation (M) _GYM(Oxidation (M))PYLNRF_ GYM(1)PYLNRF GYM(51)PYLNRF 0 0 1 ENST00000531814.5_1_11:9685687-9746474:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF;ENSG00000133789|ENST00000318950|SWAP70 ENST00000531814.5_1_11:9685687-9746474:+|nuORF ENST00000531814.5_1_11:9685687-9746474:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.7810668945312 2 588.778959 1175.54336 0.7105 0.00041833 3.4146 0.0020105 4.1251 0.0024288 588.7817920727165 50.792 0.514 50.738 50.449 50.963 -0.053871 45 25 3 0 0 0 0.038285 1 27457 27457 50.855 23.226 1 3901400 18032 14915 12498 12710 21219 21219 1777 -0.03738500917188503 GYNNYGYGND 10 Unmodified _GYNNYGYGND_ 0 0 0 nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF;nc|ENSG00000096746|P31942-6|HNRNPH3;ENST00000478698.1_1_10:70098871-70101119:+|nuORF;nc|ENSG00000096746|P31942-5|HNRNPH3;ENST00000490442.5_1_10:70098233-70101119:+|nuORF nc|ENSG00000096746|P31942-3|HNRNPH3 nc|ENSG00000096746|P31942-3|HNRNPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.718505859375 2 568.71761 1135.42067 0.18158 0.00010327 1.7955 0.0010211 1.9771 0.0011244 568.7184711657085 54.555 0.23352 54.088 53.948 54.182 -0.46664 26 11 3 0 0 0 0.66569 1 29571 29571 6.7232 0.99131 1 4229900 18033 1676 12499 12711 21220 21220 -0.14162666114907552 GYNSSHPTI 9 Unmodified _GYNSSHPTI_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2293090820312 2 488.230156 974.445759 -0.30923 -0.00015097 0.015396 7.517E-06 -0.29383 -0.00014346 488.230182889634 25.517 0.26821 25.517 25.386 25.654 0 32 12 4 0 0 0 0.042911 1 13059 13059 48.346 30.211 1 5844900 18034 5078 12500 12712 21221 21221 -0.04248566521664543 GYNSSHPTI 9 Unmodified _GYNSSHPTI_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2297668457031 2 488.230156 974.445759 0.68943 0.0003366 -0.070224 -3.4286E-05 0.6192 0.00030231 488.2300996596872 28.494 0.39243 25.346 25.142 25.534 -3.1482 41 20 3 0 0 0 0.0095811 2 15859 15859;15973 81.613 63.478 1 19135000 18035 5078 12500 12712 21222;21223 21222 -0.04248566521664543 GYNVKFDMF 9 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ GYNVKFDM(1)F GYNVKFDM(69)F 0 0 1 ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4 ENST00000589115.5_1_19:1105440-1106426:+|nuORF ENST00000589115.5_1_19:1105440-1106426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7576293945312 2 568.757692 1135.50083 0.21065 0.00011981 -1.3627 -0.00077505 -1.1521 -0.00065524 568.7575095935082 54.458 0.26059 53.991 53.882 54.143 -0.46664 30 13 3 0 0 0 0.014417 1 29505 29505 69.105 48.69 1 6716600 18036 7611 12501 12713 21224 21224 1300 -0.06149896045417336 GYNVKFDMF 9 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ 0 0 1 ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4 ENST00000589115.5_1_19:1105440-1106426:+|nuORF ENST00000589115.5_1_19:1105440-1106426:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.757692 1135.50083 0.06399 3.6395E-05 0.69824 0.00039713 0.76223 0.00043353 568.7583023471966 54.125 0.1801 54.059 53.962 54.142 -0.066936 0.00049757 0.0016226 NaN 69.105 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1303100 18037 7611 12501 12713 1300 -0.06149896045417336 GYNVKFDMF 9 Oxidation (M) _GYNVKFDM(Oxidation (M))F_ 0 0 1 ENST00000589115.5_1_19:1105440-1106426:+|nuORF;ENST00000588919.5_1_19:1105440-1106636:+|nuORF;nc|ENSG00000167468|P36969-2|GPX4;ENSG00000167468|ENST00000354171|GPX4 ENST00000589115.5_1_19:1105440-1106426:+|nuORF ENST00000589115.5_1_19:1105440-1106426:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 568.757692 1135.50083 1.0758 0.00061188 -1.491 -0.00084799 -0.41514 -0.00023611 568.7563542899508 60.239 0.28991 54.124 53.983 54.273 -6.1147 0.066427 -0.00086767 NaN 69.105 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 14010000 18038 7611 12501 12713 1300 -0.06149896045417336 GYPALGLLKF 10 Unmodified _GYPALGLLKF_ 0 0 0 ENST00000468586.5_1_1:62149184-62190652:-|nuORF;ENSG00000162604|ENST00000606498|TM2D1;ENST00000488206.5_1_1:62149110-62190652:-|nuORF ENST00000468586.5_1_1:62149184-62190652:-|nuORF ENST00000468586.5_1_1:62149184-62190652:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8191528320312 2 539.81841 1077.62227 0.50544 0.00027284 -0.83616 -0.00045138 -0.33073 -0.00017853 539.8184381834054 98.635 0.19643 92.46 92.338 92.535 -6.1757 44 14 4 0 0 0 0.04925 1 65399 65399 58.679 40.544 1 196710000 18039 6881 12502 12714 21225 21225 0.0865609437942112 GYPDHMVFSEF 11 Oxidation (M) _GYPDHM(Oxidation (M))VFSEF_ GYPDHM(1)VFSEF GYPDHM(46)VFSEF 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.78271484375 2 672.781896 1343.54924 -0.17367 -0.00011684 0.97395 0.00065526 0.80029 0.00053842 672.7827735267027 56.484 0.44149 56.484 56.322 56.763 0 55 19 4 0 0 0 0.073964 1 31382 31382 45.7 32.657 1 4851500 18040 9835 12503 12715 21226 21226 1578 -0.10879447196157344 GYPDHMVFSEF 11 Oxidation (M) _GYPDHM(Oxidation (M))VFSEF_ GYPDHM(1)VFSEF GYPDHM(76)VFSEF 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.7820434570312 2 672.781896 1343.54924 0.34656 0.00023316 -0.19032 -0.00012804 0.15624 0.00010512 673.2835118747454 57.123 0.49422 56.637 56.39 56.884 -0.4856 60 22 3 0 0 0 0.0047291 1 31030 31030 75.761 49.493 1 5403400 18041 9835 12503 12715 21227 21227 1578 -0.10879447196157344 GYPDHMVFSEF 11 Oxidation (M) _GYPDHM(Oxidation (M))VFSEF_ GYPDHM(1)VFSEF GYPDHM(46)VFSEF 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.2847900390625 2 672.781896 1343.54924 1.1822 0.00079534 -0.70269 -0.00047275 0.47948 0.00032259 672.781548140536 62.958 0.47382 56.782 56.526 57 -6.1757 37 24 2 0 0 0 0.073964 1 40672 40672 45.7 30.451 1 15227000 18042 9835 12503 12715 21228 21228 1578 -0.10879447196157344 GYPDHMVFSEF 11 Unmodified _GYPDHMVFSEF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.7848510742188 2 664.784438 1327.55432 0.26368 0.00017529 -0.40197 -0.00026722 -0.13829 -9.1932E-05 664.7842312244389 68.901 0.26364 68.42 68.242 68.506 -0.48071 24 11 3 0 0 0 0.65108 1 37617 37617 8.7454 3.4485 1 1229800 18043 9835 12503 12716 21229 21229 -0.09635143333548513 GYPDHMVFSEF 11 Unmodified _GYPDHMVFSEF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.7853393554688 2 664.784438 1327.55432 0.38425 0.00025544 -1.0425 -0.00069304 -0.65826 -0.0004376 664.7838378726965 77.673 0.34653 71.497 71.273 71.619 -6.1757 22 19 2 0 0 0 0.011312 1 50707 50707 66.457 35.82 1 10101000 18044 9835 12503 12716 21230 21230 -0.09635143333548513 GYPDHMVFSEF 11 Unmodified _GYPDHMVFSEF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 664.7847900390625 2 664.784438 1327.55432 NaN NaN NaN NaN NaN NaN NaN 77.296 1 71.12 70.62 71.62 -6.1757 0 0 0 0.057868 1 50557 50557 60.074 27.288 1 18045 9835 12503 12716 21231 21231 -0.09635143333548513 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.28125 2 516.761092 1031.50763 0.29087 0.00015031 -0.75854 -0.00039198 -0.46767 -0.00024167 516.7608621854916 65.822 0.18026 65.822 65.718 65.898 0 20 9 3 0 0 0 0.16229 1 36691 36691 24.674 5.2349 1 4590400 18046 3627 12504 12717 21232 21232 -0.006862151025416097 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7614135742188 2 516.761092 1031.50763 0.0519 2.682E-05 -0.7499 -0.00038752 -0.698 -0.0003607 516.7607395090916 66.292 0.37418 65.809 65.651 66.025 -0.48323 50 20 3 0 0 0 0.040472 2 36134 36134;36249 49.669 35.087 1 15971000 18047 3627 12504 12717 21233;21234 21233 -0.006862151025416097 GYPEVALHF 9 Unmodified _GYPEVALHF_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.761092 1031.50763 0.9731 0.00050286 -1.0685 -0.00055218 -0.095442 -4.9321E-05 516.7605509828962 65.836 0.1228 65.846 65.768 65.891 0.0095596 0.020183 -0.0002791 NaN 49.669 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1241000 18048 3627 12504 12717 -0.006862151025416097 GYPGGIHEV 9 Unmodified _GYPGGIHEV_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2318725585938 2 464.729792 927.445031 -0.35812 -0.00016643 0.72101 0.00033507 0.36289 0.00016864 464.7301955901525 32.754 0.28122 32.595 32.428 32.71 -0.15919 18 11 2 0 0 0 0.2143 1 17038 17038 21.747 3.6117 1 1976700 + 18049 177 12505 12718 21235 21235 -0.02159361170708962 GYPGRLHLW 9 Unmodified _GYPGRLHLW_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8663330078125 3 366.866293 1097.57705 0.25327 9.2917E-05 0.61656 0.0002262 0.86984 0.00031911 366.86653917813464 51.995 0.33588 51.936 51.731 52.067 -0.058918 36 15 3 0 0 0 0.28047 1 28111 28111 12.241 6.9438 1 3745900 18050 6106 12506 12719 21236 21236 0.03216288636895115 GYPGRQYYF 9 Unmodified _GYPGRQYYF_ 0 0 0 ENST00000473218.5_1_2:227771569-227779114:+|nuORF;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENSG00000144468|ENST00000392062|RHBDD1 ENST00000473218.5_1_2:227771569-227779114:+|nuORF ENST00000473218.5_1_2:227771569-227779114:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7698364257812 2 575.769448 1149.52434 0.48467 0.00027906 0.86194 0.00049628 1.3466 0.00077533 575.770150601034 46.132 0.3096 45.795 45.686 45.995 -0.33664 32 15 3 0 0 0 0.2001 2 24729 24631;24729 23.148 0 1 6500400 18051 5614 12507 12720 21237;21238 21238 -0.04443714216586159 GYPGRQYYF 9 Unmodified _GYPGRQYYF_ 0 0 0 ENST00000473218.5_1_2:227771569-227779114:+|nuORF;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENSG00000144468|ENST00000392062|RHBDD1 ENST00000473218.5_1_2:227771569-227779114:+|nuORF ENST00000473218.5_1_2:227771569-227779114:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7702026367188 2 575.769448 1149.52434 0.51481 0.00029641 0.17581 0.00010123 0.69062 0.00039764 575.7697316690065 45.933 0.31927 45.905 45.745 46.064 -0.028015 31 14 3 0 0 0 0.2001 1 24706 24706 23.148 14.555 1 2211300 18052 5614 12507 12720 21239 21239 -0.04443714216586159 GYPGRQYYF 9 Unmodified _GYPGRQYYF_ 0 0 0 ENST00000473218.5_1_2:227771569-227779114:+|nuORF;nc|ENSG00000144468|Q8TEB9-2|RHBDD1;ENST00000493526.1_1_2:227773206-227860235:+|nuORF;ENST00000491490.5_1_2:227771589-227860235:+|nuORF;ENSG00000144468|ENST00000392062|RHBDD1 ENST00000473218.5_1_2:227771569-227779114:+|nuORF ENST00000473218.5_1_2:227771569-227779114:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.771240234375 2 575.769448 1149.52434 1.1056 0.00063655 0.30862 0.00017769 1.4142 0.00081424 575.7698860754895 50.796 0.34079 45.147 44.975 45.316 -5.649 25 20 2 0 0 0 0.038285 1 31900 31900 50.855 29.108 1 26907000 18053 5614 12507 12720 21240 21240 -0.04443714216586159 GYPKPIFKGF 10 Unmodified _GYPKPIFKGF_ 0 0 0 nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4 nc|ENSG00000116690|Q92954-5|PRG4 nc|ENSG00000116690|Q92954-5|PRG4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.8008422851562 2 577.32386 1152.63317 0.58517 0.00033783 3.0646 0.0017692 3.6497 0.0021071 577.3250377976711 82.081 0.10355 75.906 75.867 75.97 -6.1757 8 5 2 0 0 0 0.23489 1 53885 53885 7.9102 0 1 4224700 18054 3243 12508 12721 21241 21241 0.06295496753728003 GYPLWKVTF 9 Unmodified _GYPLWKVTF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.802978515625 2 555.80276 1109.59097 0.56647 0.00031485 0.45143 0.00025091 1.0179 0.00056575 555.8028044602538 78.437 0.52972 78.489 78.276 78.806 0.052452 87 21 5 0 0 0 0.024882 2 43350 43243;43350 58.679 33.28 1 159320000 18055 10158 12509 12722 21242;21243 21243 0.04055521345298985 GYPLWKVTF 9 Unmodified _GYPLWKVTF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.803466796875 2 555.80276 1109.59097 1.1843 0.00065823 0.071244 3.9597E-05 1.2555 0.00069782 555.8026928008128 94.669 0.91959 88.494 88.03 88.949 -6.1757 196 52 5 0 0 0 0.018301 3 62824 62584;62703;62824 65.235 25.278 1 698750000 18056 10158 12509 12722 21244;21245;21246 21246 0.04055521345298985 GYPPRQNYGY 10 Unmodified _GYPPRQNYGY_ 0 0 0 REV__ENSG00000235272|ENST00000444122|RAMACL REV__ENSG00000235272|ENST00000444122|RAMACL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.286376953125 2 607.783087 1213.55162 0.74373 0.00045203 1.9112 0.0011616 2.655 0.0016137 607.7840942283268 75.471 0.40973 74.994 74.759 75.169 -0.47713 39 22 2 0 0 0 0.68719 1 41266 41266 4.3292 0 1 2844500 + 18057 22410 12510 12723 21247 21247 -0.04661230676197192 GYPQHAKLI 9 Unmodified _GYPQHAKLI_ 0 0 0 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7908935546875 2 513.790184 1025.56581 0.22441 0.0001153 1.8848 0.00096841 2.1093 0.0010837 513.7910958257248 39.766 0.21211 39.766 39.661 39.873 0 18 10 2 0 0 0 0.48152 1 21351 21351 8.5933 2.2392 1 2595700 + 18058 19038 12511 12724 21248 21248 0.05405466542742943 GYPSRASFHEL 11 Unmodified _GYPSRASFHEL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3093872070312 2 632.309469 1262.60439 0.67471 0.00042662 -1.9317 -0.0012214 -1.257 -0.00079479 632.3086350552419 39.102 0.24638 34.651 34.488 34.734 -4.4509 27 15 2 0 0 0 0.029924 1 23136 23136 55.249 15.299 1 12183000 18059 9845 12512 12725 21249 21249 -0.016412726133694377 GYQPAHPTF 9 Unmodified _GYQPAHPTF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2427673339844 2 509.243067 1016.47158 -0.043239 -2.2019E-05 -1.5589 -0.00079385 -1.6021 -0.00081587 509.2423066964652 35.358 0.17696 35.358 35.265 35.442 0 14 8 2 0 0 0 0.026094 1 18691 18691 57.471 40.529 1 5094100 18060 4239 12513 12726 21250 21250 -0.03599672279392507 GYQPAHPTF 9 Unmodified _GYQPAHPTF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2426452636719 2 509.243067 1016.47158 -0.65906 -0.00033562 -0.03862 -1.9667E-05 -0.69768 -0.00035529 509.74445547294414 35.545 0.19631 35.323 35.176 35.372 -0.2224 14 8 2 0 0 0 0.038285 1 18600 18600 50.855 39.215 1 4296400 18061 4239 12513 12726 21251 21251 -0.03599672279392507 GYQRRWFVL 9 Unmodified _GYQRRWFVL_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2 ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.892822265625 3 408.89273 1223.65636 0.045781 1.8719E-05 -0.038356 -1.5684E-05 0.0074246 3.0359E-06 408.89267107777425 59.615 0.27555 59.562 59.399 59.675 -0.053062 38 13 4 0 0 0 0.07087 1 32470 32470 39.95 27.775 1 15477000 18062 2695;9290 12514 12727 21252 21252 0.05347935591044006 GYQRRWFVL 9 Unmodified _GYQRRWFVL_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2 ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8940124511719 3 408.89273 1223.65636 1.0118 0.00041372 -0.92775 -0.00037935 0.084061 3.4372E-05 408.8927793055249 92.357 0.52976 86.181 86.005 86.534 -6.1757 66 31 3 0 0 0 0.047788 3 61008 61008;61133;61265 45.7 34.801 1 29539000 18063 2695;9290 12514 12727 21253;21254;21255 21253 0.05347935591044006 GYQRRWFVL 9 Unmodified _GYQRRWFVL_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2 ENSG00000110048|ENST00000263847|OSBP;nc|ENSG00000184792|Q969R2-2|OSBP2 ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8360595703125 2 612.835457 1223.65636 0.82905 0.00050807 0.058188 3.566E-05 0.88724 0.00054373 612.8355207002895 92.325 0.41073 86.149 86.02 86.431 -6.1757 36 24 2 0 0 0 0.094149 1 61248 61248 30.225 9.7712 1 12746000 18064 2695;9290 12514 12727 21256 21256 0.05347935591044006 GYRAELIIDQF 11 Unmodified _GYRAELIIDQF_ 0 0 0 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 MSMS AL20221201_MKP_PDAC_01 4 662.8490600585938 2 662.848427 1323.6823 NaN NaN NaN NaN NaN NaN NaN 93.427 1 87.251 86.751 87.751 -6.1757 0 0 0 0.64436 1 61836 61836 23.79 0 1 + 18065 29891 12515 12728 21257 21257 0.033407402519969764 GYRERKRW 8 Unmodified _GYRERKRW_ 0 0 0 REV__ENSG00000180318|ENST00000316824|ALX1 REV__ENSG00000180318|ENST00000316824|ALX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8140258789062 2 575.815056 1149.61556 NaN NaN NaN NaN NaN NaN NaN 3.0566 1 3.0443 2.5443 3.5443 -0.012334 0 0 0 0.97444 1 1551 1551 0.6015 0.076735 1 + 18066 21315 12516 12729 21258 21258 0.04673594271412185 GYRGDFETF 9 Unmodified _GYRGDFETF_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2433471679688 2 546.243264 1090.47197 -0.043215 -2.3606E-05 -0.73315 -0.00040048 -0.77637 -0.00042408 546.2428248417295 45.229 0.26709 45.229 45.095 45.363 0 28 13 3 0 0 0 0.009483 1 24615 24615 81.89 61.019 1 13311000 18067 6787 12517 12730 21259 21259 -0.06964297350191373 GYRIELLGSF 10 Unmodified _GYRIELLGSF_ 0 0 0 REV__nc|ENSG00000196118|A1A4V9-2|CFAP119 REV__nc|ENSG00000196118|A1A4V9-2|CFAP119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8133544921875 2 577.813856 1153.61316 0.56858 0.00032853 0.13506 7.8039E-05 0.70364 0.00040657 577.8140812917745 71.429 0.3709 70.952 70.726 71.097 -0.47736 43 15 4 0 0 0 0.36296 2 39042 39042;39140 23.79 3.3752 1 4501000 + 18068 29875 12518 12731 21260;21261 21260 0.04249701023104535 GYRIELLGSF 10 Unmodified _GYRIELLGSF_ 0 0 0 REV__nc|ENSG00000196118|A1A4V9-2|CFAP119 REV__nc|ENSG00000196118|A1A4V9-2|CFAP119 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.813856 1153.61316 0.56858 0.00032853 0.13506 7.8039E-05 0.70364 0.00040657 577.8140812917745 71.429 0.3709 70.952 70.726 71.097 -0.47736 0 0 NaN 23.79 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4501000 + 18069 29875 12518 12731 0.04249701023104535 GYRLDLNSSF 10 Unmodified _GYRLDLNSSF_ 0 0 0 REV__nc|ENSG00000034533|Q2TB18-2|ASTE1 REV__nc|ENSG00000034533|Q2TB18-2|ASTE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7906494140625 2 586.290745 1170.56694 0.31201 0.00018293 -1.1604 -0.00068032 -0.84837 -0.00049739 586.2898555914229 63.122 0.2294 62.636 62.542 62.771 -0.48617 25 10 3 0 0 0 0.5905 1 34427 34427 11.64 0.81637 1 1515200 + 18070 17160 12519 12732 21262 21262 -0.011523638789867618 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2681274414062 2 612.764029 1223.5135 -0.18434 -0.00011296 2.4158 0.0014803 2.2315 0.0013674 612.765274934163 55.257 0.31748 55.257 55.029 55.347 0 21 13 2 0 0 0 0.48615 1 30647 30647 17.113 3.2068 1 2120300 + 18071 17735;23716 12520 12733 21263 21263 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7651977539062 2 612.764029 1223.5135 0.55406 0.00033951 2.5133 0.0015401 3.0673 0.0018796 612.7655084462191 59.872 0.33007 59.872 59.716 60.046 0 21 15 2 0 0 0 0.37677 1 33372 33372 22.736 3.4793 1 2314800 + 18072 17735;23716 12520 12733 21264 21264 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7652587890625 2 612.764029 1223.5135 0.60106 0.00036831 2.5646 0.0015715 3.1656 0.0019398 612.7657740278355 60.614 0.22878 60.614 60.514 60.743 0 14 9 2 0 0 0 0.65108 1 33801 33801 8.7454 2.5396 1 751560 + 18073 17735;23716 12520 12733 21265 21265 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.7666015625 2 612.764029 1223.5135 NaN NaN NaN NaN NaN NaN NaN 54.429 1 54.362 53.862 54.862 -0.066936 0 0 0 0.77961 1 29559 29559 13.042 2.2185 1 + 18074 17735;23716 12520 12733 21266 21266 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.2671508789062 2 612.764029 1223.5135 0.87001 0.00053311 2.3442 0.0014364 3.2142 0.0019695 612.7657213436645 60.225 0.38741 54.11 53.886 54.273 -6.1147 24 19 2 0 0 0 0.39949 1 38727 38727 21.537 1.1224 1 17621000 + 18075 17735;23716 12520 12733 21267 21267 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 612.764029 1223.5135 0.83553 0.00051199 2.1603 0.0013237 2.9958 0.0018357 612.7654112108557 54.143 0.74697 54.143 53.968 54.715 0 -0.070009 5.2858E-05 NaN 21.537 83 33 4 NaN NaN NaN NaN 0 NaN NaN 0 20312000 + 18076 17735;23716 12520 12733 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 612.764029 1223.5135 0.34555 0.00021174 3.1694 0.0019421 3.515 0.0021539 612.765399448936 54.395 0.15659 54.328 54.202 54.359 -0.066936 0.11522 0.0012896 NaN 21.537 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2763600 + 18077 17735;23716 12520 12733 -0.08931161381497077 GYSDFGGIFDF 11 Unmodified _GYSDFGGIFDF_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1;REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 612.764029 1223.5135 0.87001 0.00053311 2.3442 0.0014364 3.2142 0.0019695 612.7657213436645 60.225 0.38741 54.11 53.886 54.273 -6.1147 -0.10265 0.00027819 NaN 21.537 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 17621000 + 18078 17735;23716 12520 12733 -0.08931161381497077 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7454833984375 2 557.745639 1113.47673 -0.099365 -5.542E-05 -1.2177 -0.00067918 -1.3171 -0.0007346 557.7449276300221 55.272 0.62386 55.272 54.968 55.592 0 150 27 7 0 0 0 0.012148 3 30602 30602;30703;30805 74.423 45.936 1 1230600000 18079 4909 12521 12734 21268;21269;21270 21268 -0.07547413207407772 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7445068359375 2 557.745639 1113.47673 0.065275 3.6407E-05 -0.55135 -0.00030752 -0.48608 -0.00027111 557.7452009142371 55.868 0.52929 55.39 55.132 55.661 -0.47798 110 25 6 0 0 0 0.012148 2 30244 30244;30343 74.423 47.539 1 398030000 18080 4909 12521 12734 21271;21272 21271 -0.07547413207407772 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7462158203125 2 557.745639 1113.47673 0.19667 0.00010969 -0.68774 -0.00038359 -0.49107 -0.00027389 557.7451633625896 55.518 0.30927 55.449 55.278 55.588 -0.068737 45 15 4 0 0 0 0.019303 2 30126 30126;30225 64.236 43.783 1 41719000 18081 4909 12521 12734 21273;21274 21273 -0.07547413207407772 GYSEHFVEF 9 Unmodified _GYSEHFVEF_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7460327148438 2 557.745639 1113.47673 1.2411 0.00069221 -0.21008 -0.00011717 1.031 0.00057504 557.7454244059509 61.472 0.90215 55.324 55.015 55.917 -6.1478 188 46 5 0 0 0 0.0083087 5 39588 39465;39588;39711;39833;39983 97.075 70.191 1 2985699999.9999995 18082 4909 12521 12734 21275;21276;21277;21278;21279 21276 -0.07547413207407772 GYSIWKHIY 9 Unmodified _GYSIWKHIY_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.8023681640625 2 583.803291 1165.59203 0.87173 0.00050892 -2.722 -0.0015891 -1.8503 -0.0010802 584.3033404083533 34.335 0.2451 30.24 30.074 30.319 -4.0951 21 13 2 0 0 0 0.209 1 19819 19819 3.9444 2.6149 1 10818000 + 18083 21164 12522 12735 21280 21280 0.01585735714229486 GYSLSLATLL 10 Unmodified _GYSLSLATLL_ 0 0 0 ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR ENST00000588816.1_1_19:46176107-46178652:+|nuORF ENST00000588816.1_1_19:46176107-46178652:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2977294921875 2 519.297507 1036.58046 -0.07453 -3.8703E-05 0.93593 0.00048603 0.8614 0.00044732 519.2978376089483 61.555 0.25847 61.066 60.922 61.181 -0.48898 28 11 3 0 0 0 0.11755 1 33544 33544 43.858 1.9027 1 2850600 18084 419 12523 12736 21281 21281 0.06363493900244066 GYSLSLATLL 10 Unmodified _GYSLSLATLL_ 0 0 0 ENST00000588816.1_1_19:46176107-46178652:+|nuORF;nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR ENST00000588816.1_1_19:46176107-46178652:+|nuORF ENST00000588816.1_1_19:46176107-46178652:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.297507 1036.58046 0.49472 0.0002569 1.565 0.0008127 2.0597 0.0010696 519.2983092563763 61.181 0.29745 61.181 60.999 61.297 0 0.057654 0.00038758 NaN 43.858 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1292500 18085 419 12523 12736 0.06363493900244066 GYSMVEWMVI 10 Unmodified _GYSMVEWMVI_ 0 0 0 REV__nc|ENSG00000080224|Q9UF33|EPHA6;REV__ENSG00000182580|ENST00000330394|EPHB3;REV__nc|ENSG00000135333|Q15375-2|EPHA7;REV__ENSG00000133216|ENST00000374630|EPHB2 REV__ENSG00000182580|ENST00000330394|EPHB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5240478515625 3 405.524327 1213.55115 -0.050733 -2.0573E-05 -0.90657 -0.00036764 -0.9573 -0.00038821 405.5239777298384 38.677 0.182 38.688 38.597 38.779 0.011452 13 8 2 0 0 0 0.6606 1 20593 20593 3.8763 0 1 2093200 + 18086 17661;23281;19914;20053 12524 12737 21282 21282 -0.047081097118962134 GYSPWGPG 8 Unmodified _GYSPWGPG_ 0 0 0 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 820.363037109375 1 820.36243 819.355153 -0.52449 -0.00043027 0.52352 0.00042947 -0.00097552 -8.0028E-07 820.3626078228181 55.279 0.3129 55.279 55.101 55.414 0 23 13 2 0 0 0 0.61462 2 30663 30663;30778 24.674 12.142 1 3820700 + 18087 19358 12525 12738 21283;21284 21283 -0.06174990779277323 GYSPYQLTW 9 Unmodified _GYSPYQLTW_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.764892578125 2 557.763832 1113.51311 0.98085 0.00054708 0.28855 0.00016094 1.2694 0.00070802 557.7637540517514 81.801 0.60794 75.625 75.343 75.951 -6.1757 108 34 4 0 0 0 0.14602 2 53693 53693;53812 28.487 14.979 1 216610000 18088 1888 12526 12739 21285;21286 21285 -0.03910536310718271 GYSQCMETEV 10 Unmodified _GYSQCMETEV_ 0 0 0 nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1;ENST00000410092.7_1_18:12546895-12635091:-|nuORF nc|ENSG00000134278|Q08AE8-2|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7294311523438 2 573.725732 1145.43691 NaN NaN NaN NaN NaN NaN NaN 44.67 1 44.67 44.17 45.17 0 0 0 0 0.7417 1 24316 24316 14.838 6.245 1 18089 4582 12527 12740 21287 21287 -0.12999044264688564 GYSSKFQFF 9 Unmodified _GYSSKFQFF_ 0 0 0 ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5 ENST00000421674.5_1_15:44177877-44211195:-|nuORF ENST00000421674.5_1_15:44177877-44211195:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.7672729492188 2 555.766374 1109.5182 0.87221 0.00048475 0.2806 0.00015595 1.1528 0.00064069 555.7664061908653 64.741 0.37741 64.741 64.539 64.916 1.5259E-05 57 18 4 0 0 0 0.0047067 2 35405 35405;35513 118.07 80.094 1 36706000 18090 8156 12528 12741 21288;21289 21288 -0.032182324481027536 GYSSKFQFF 9 Unmodified _GYSSKFQFF_ 0 0 0 ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5 ENST00000421674.5_1_15:44177877-44211195:-|nuORF ENST00000421674.5_1_15:44177877-44211195:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.7681274414062 2 555.766374 1109.5182 NaN NaN NaN NaN NaN NaN NaN 73.171 1 66.995 66.495 67.495 -6.1757 0 0 0 0.14 1 47860 47860 37.974 22.127 1 18091 8156 12528 12741 21290 21290 -0.032182324481027536 GYSSKFQFF 9 Unmodified _GYSSKFQFF_ 0 0 0 ENST00000421674.5_1_15:44177877-44211195:-|nuORF;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5 ENST00000421674.5_1_15:44177877-44211195:-|nuORF ENST00000421674.5_1_15:44177877-44211195:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.7662353515625 2 555.766374 1109.5182 NaN NaN NaN NaN NaN NaN NaN 73.381 1 67.205 66.705 67.705 -6.1757 0 0 0 0.047623 1 47989 47989 58.679 35.53 1 18092 8156 12528 12741 21291 21291 -0.032182324481027536 GYSVIIEK 8 Unmodified _GYSVIIEK_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 908.5106811523438 1 908.50876 907.501483 0.23898 0.00021712 -0.40368 -0.00036675 -0.16469 -0.00014963 908.5081738897583 73.275 0.32203 72.8 72.63 72.952 -0.47588 25 14 2 0 0 0 0.5953 1 40047 40047 26.341 1.6674 1 2012900 18093 7290 12529 12742 21292 21292 0.044032666659632014 GYSYNIRHSF 10 Unmodified _GYSYNIRHSF_ 0 0 0 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2010498046875 3 415.2 1242.57817 -0.50095 -0.00020799 1.9168 0.00079586 1.4159 0.00058786 415.2006412392288 36.246 0.16006 35.997 35.906 36.066 -0.2497 13 6 3 0 0 0 0.67459 1 19030 19030 5.4027 3.3167 1 2001300 18094 5758 12530 12743 21293 21293 -0.033415417848800644 GYSYNIRHSF 10 Unmodified _GYSYNIRHSF_ 0 0 0 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2003173828125 3 415.2 1242.57817 -0.26266 -0.00010906 1.0213 0.00042403 0.75861 0.00031497 415.2008317542837 35.857 0.14292 35.882 35.806 35.949 0.024971 10 6 2 0 0 0 0.42143 1 18994 18994 22.775 16.145 1 1440300 18095 5758 12530 12743 21294 21294 -0.033415417848800644 GYSYYRFLCEL 11 Unmodified _GYSYYRFLCEL_ 0 0 0 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.328857421875 2 707.329013 1412.64347 0.038442 2.7191E-05 0.68793 0.00048659 0.72637 0.00051378 707.3294712711296 31.608 0.24625 31.491 31.366 31.613 -0.11713 36 9 5 0 0 0 0.65108 1 16415 16415 8.7454 1.1365 1 33830000 + 18096 21273 12531 12744 21295 21295 -0.04634308374033935 GYTCHCVLPYT 11 Unmodified _GYTCHCVLPYT_ 0 0 0 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.8540344238281 3 419.519465 1255.53657 0.59785 0.00025081 -0.45006 -0.00018881 0.14779 6.2002E-05 419.8537595844965 46.682 0.27179 46.346 46.19 46.462 -0.33664 30 13 3 0 0 0 0.68427 1 24974 24974 2.6312 0 1 9105700 18097 4577 12532 12745 21296 21296 -0.08098181860054865 GYTRIQEF 8 Unmodified _GYTRIQEF_ 0 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2533569335938 2 507.256174 1012.49779 -0.031216 -1.5835E-05 0.060473 3.0675E-05 0.029256 1.4841E-05 507.25629235745515 63.354 0.28664 62.868 62.729 63.016 -0.48617 28 12 3 0 0 0 0.64853 1 34521 34521 21.747 1.293 1 3015900 + 18098 155 12533 12746 21297 21297 -0.007954031079066226 GYTSRWYHL 9 Unmodified _GYTSRWYHL_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.861572265625 3 394.861207 1181.56179 0.40657 0.00016054 -0.25423 -0.00010039 0.15234 6.0152E-05 394.8611063401442 43.092 0.20554 43.076 42.978 43.184 -0.015667 22 9 3 0 0 0 0.32871 1 23078 23078 10.8 0 1 21904000 18099 7290 12534 12747 21298 21298 -0.02172622950956793 GYTSRWYHL 9 Unmodified _GYTSRWYHL_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8612976074219 3 394.861207 1181.56179 1.6268 0.00064236 -0.17382 -6.8635E-05 1.453 0.00057373 394.86106649053943 47.494 0.44273 42.26 42.025 42.468 -5.2339 57 25 3 0 0 0 0.32871 2 29502 29364;29502 10.8 5.3968 1 12535000 18100 7290 12534 12747 21299;21300 21300 -0.02172622950956793 GYTSRWYHL 9 Unmodified _GYTSRWYHL_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 394.861207 1181.56179 0.40657 0.00016054 -0.25423 -0.00010039 0.15234 6.0152E-05 394.8611063401442 43.092 0.20554 43.076 42.978 43.184 -0.015667 0 0 NaN 10.8 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 21904000 18101 7290 12534 12747 -0.02172622950956793 GYTTALKSF 9 Unmodified _GYTTALKSF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2612609863281 2 494.260925 986.507297 0.20673 0.00010218 0.17873 8.8341E-05 0.38546 0.00019052 494.2610196311686 45.515 0.14932 45.191 45.122 45.271 -0.32425 10 7 2 0 0 0 0.05483 1 24333 24333 43.772 20.624 1 5655300 18102 10120 12535 12748 21301 21301 0.01350365177609092 GYTTALKSF 9 Unmodified _GYTTALKSF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2974548339844 2 494.260925 986.507297 1.0714 0.00052955 0.97369 0.00048126 2.0451 0.0010108 494.2613444368646 50.819 0.32994 45.17 45.007 45.337 -5.649 28 19 2 0 0 0 0.12281 1 31957 31957 36.506 21.668 1 31686000 18103 10120 12535 12748 21302 21302 0.01350365177609092 GYTTMKLVI 9 Unmodified _GYTTMKLVI_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S REV__ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2897338867188 2 513.288628 1024.5627 0.23962 0.00012299 1.8889 0.00096957 2.1286 0.0010926 513.2898461313677 84.696 1.0401 78.52 77.837 78.877 -6.1757 80 59 2 0 0 0 0.14 2 55648 55648;55799 29.082 2.2827 1 18933000 + 18104 17689 12536 12749 21303;21304 21303 0.05140455373725672 GYVKFWQIYI 10 Unmodified _GYVKFWQIYI_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.5743713378906 3 439.572775 1315.69649 NaN NaN NaN NaN NaN NaN NaN 32.954 1 32.954 32.454 33.454 0 0 0 0 0.94014 1 17249 17249 3.3196 0.68841 1 18105 635 12537 12750 21305 21305 0.05127437470969198 GYVPTENLRF 10 Unmodified _GYVPTENLRF_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.310546875 2 598.308938 1194.60332 0.20667 0.00012365 0.60694 0.00036314 0.81361 0.00048679 598.3096502277928 57.967 0.26408 57.967 57.794 58.058 0 19 10 2 0 0 0 0.16361 1 32240 32240 38.176 12.776 1 2318900 18106 7151 12538 12751 21306 21306 0.013805130176933744 GYVPTENLRF 10 Unmodified _GYVPTENLRF_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3088989257812 2 598.308938 1194.60332 0.31392 0.00018782 0.077374 4.6293E-05 0.39129 0.00023411 598.3088784775022 58.509 0.31364 58.018 57.839 58.153 -0.49079 48 14 4 0 0 0 0.0199 2 31760 31760;31866 75.761 46.679 1 28257000 18107 7151 12538 12751 21307;21308 21307 0.013805130176933744 GYVPTENLRF 10 Unmodified _GYVPTENLRF_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3099975585938 2 598.308938 1194.60332 0.88314 0.00052839 0.99292 0.00059407 1.8761 0.0011225 598.3094103113419 64.275 0.73479 58.099 57.822 58.557 -6.1757 88 39 3 0 0 0 0.0022539 3 41527 41527;41661;41798 107.19 74.882 1 48777000 18108 7151 12538 12751 21309;21310;21311 21309 0.013805130176933744 GYVVWQEVF 9 Unmodified _GYVVWQEVF_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7816162109375 2 563.782025 1125.5495 0.59795 0.00033712 -0.21388 -0.00012058 0.38408 0.00021654 563.7818756979661 91.697 0.35051 91.216 91.02 91.37 -0.48092 46 23 3 0 0 0 0.46501 2 50170 50069;50170 14.582 9.351 1 1461700 18109 10446 12539 12752 21312;21313 21313 -0.008256594139993467 GYWDCSVCTF 10 2 Carbamidomethyl (C) _GYWDC(Carbamidomethyl (C))SVC(Carbamidomethyl (C))TF_ GYWDC(1)SVC(1)TF GYWDC(46)SVC(46)TF 0 2 0 nc|ENSG00000015153|Q8IY57-4|YAF2;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2 nc|ENSG00000015153|Q8IY57-4|YAF2 nc|ENSG00000015153|Q8IY57-4|YAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.7467651367188 2 647.746998 1293.47944 0.7091 0.00045932 -0.56105 -0.00036342 0.14805 9.59E-05 647.746729941 75.822 0.27218 69.647 69.48 69.752 -6.1757 22 13 2 0 0 0 0.1028 1 49587 49587 46.021 32.115 1 7713300 18110 491 12540 12753 21314 21314 33;34 -0.15555649136445027 GYYEMTYIHW 10 Unmodified _GYYEMTYIHW_ 0 0 0 REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF REV__ENST00000356189.5_1_10:15120101-15120344:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8673706054688 3 454.865629 1361.57506 NaN NaN NaN NaN NaN NaN NaN 88.963 1 88.963 88.463 89.463 0 0 0 0 1.0019 1 49233 49233 0.15932 0.075971 1 + 18111 25822 12541 12754 21315 21315 -0.09126552953898681 GYYHDSFKF 9 Unmodified _GYYHDSFKF_ 0 0 0 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 MSMS AL20221201_MKP_PDAC_01 4 388.5087890625 3 388.510063 1162.50836 NaN NaN NaN NaN NaN NaN NaN 94.688 1 88.512 88.012 89.012 -6.1757 0 0 0 0.82739 1 62721 62721 2.4985 1.2837 1 + 18112 18779 12542 12755 21316 21316 -0.0663942045348449 GYYKTMYHS 9 Unmodified _GYYKTMYHS_ 0 0 0 ENST00000412082.6_1_16:20935625-20935910:+|nuORF ENST00000412082.6_1_16:20935625-20935910:+|nuORF ENST00000412082.6_1_16:20935625-20935910:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.8418579101562 3 383.839303 1148.49608 NaN NaN NaN NaN NaN NaN NaN 0.057837 1 -2.4241 -2.9241 -1.9241 -2.482 0 0 0 0.85737 1 30 30 0.26902 0.1097 1 18113 12984 12543 12756 21317 21317 -0.0722278018815814 GYYKTMYHS 9 Unmodified _GYYKTMYHS_ 0 0 0 ENST00000412082.6_1_16:20935625-20935910:+|nuORF ENST00000412082.6_1_16:20935625-20935910:+|nuORF ENST00000412082.6_1_16:20935625-20935910:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.8388977050781 3 383.839303 1148.49608 NaN NaN NaN NaN NaN NaN NaN 0.62805 1 -1.8539 -2.3539 -1.3539 -2.482 0 0 0 0.85737 1 332 332 0.26902 0.1097 1 18114 12984 12543 12756 21318 21318 -0.0722278018815814 GYYPHRAFRNY 11 Unmodified _GYYPHRAFRNY_ 0 0 0 REV__ENSG00000151233|ENST00000398675|GXYLT1 REV__ENSG00000151233|ENST00000398675|GXYLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.9040222167969 3 481.902065 1442.68437 0.65805 0.00031712 1.9886 0.00095831 2.6467 0.0012754 481.9030537209306 44.761 0.23799 39.909 39.815 40.053 -4.852 28 17 2 0 0 0 0.65108 1 27381 27381 4.4062 0.28952 1 10035000 + 18115 21057 12544 12757 21319 21319 -0.01926786219519272 GYYRVSSYF 9 Unmodified _GYYRVSSYF_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2703247070312 2 571.269281 1140.52401 0.77649 0.00044359 -0.90893 -0.00051924 -0.13244 -7.5657E-05 571.2686203416038 52.598 0.26062 52.539 52.368 52.629 -0.058918 26 12 3 0 0 0 0.044011 1 28469 28469 47.749 28.492 1 3704400 18116 3393 12545 12758 21320 21320 -0.04063133936415397 GYYRVSSYF 9 Unmodified _GYYRVSSYF_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MSMS AL20221201_MKP_PDAC_01 4 571.272705078125 2 571.269281 1140.52401 NaN NaN NaN NaN NaN NaN NaN 58.452 1 52.377 51.877 52.877 -6.0745 0 0 0 0.10759 1 37452 37452 41.84 22.583 1 18117 3393 12545 12758 21321 21321 -0.04063133936415397 GYYTAAELKP 10 Unmodified _GYYTAAELKP_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3;nc|ENSG00000115339|Q14435-2|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7402954101562 2 556.784764 1111.55498 -0.065007 -3.6195E-05 1.2847 0.00071532 1.2197 0.00067913 556.783953655188 34.642 0.16602 34.451 34.331 34.497 -0.19131 11 7 2 0 0 0 0.23227 1 18046 18046 10.824 6.4947 1 3808300 18118 3112 12546 12759 21322 21322 0.003660193778159737 HAAAALINF 9 Unmodified _HAAAALINF_ 0 0 0 ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5 ENSG00000065150|ENST00000651721|IPO5 ENSG00000065150|ENST00000651721|IPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2552490234375 2 464.255977 926.497401 0.14799 6.8703E-05 0.18982 8.8126E-05 0.33781 0.00015683 464.25596639077725 58.199 0.30658 57.709 57.556 57.863 -0.48974 23 14 2 0 0 0 0.095049 1 31624 31624 34.187 16.052 1 2792900 18119 892 12547 12760 21323 21323 0.031212219629082938 HAAAPAVSL 9 Unmodified _HAAAPAVSL_ 0 0 0 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7349548339844 2 418.734877 835.455202 NaN NaN NaN NaN NaN NaN NaN 36.571 1 36.571 36.071 37.071 0 0 0 0 0.17175 1 19407 19407 34.187 7.8461 1 18120 4237 12548 12761 21324 21324 0.030892465545093728 HAAAPAVSL 9 Unmodified _HAAAPAVSL_ 0 0 0 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.7359313964844 2 418.734877 835.455202 1.5394 0.0006446 0.11791 4.9373E-05 1.6573 0.00069397 418.7349355066397 40.964 0.41936 36.356 36.18 36.599 -4.6079 35 25 2 0 0 0 0.023761 2 24500 24500;24641 59.795 7.5269 1 7734600 18121 4237 12548 12761 21325;21326 21325 0.030892465545093728 HAAAYRNAL 9 Unmodified _HAAAYRNAL_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7617492675781 2 493.761958 985.509363 -0.40628 -0.00020061 0.89607 0.00044244 0.48978 0.00024184 493.7622808297851 19.309 0.12481 19.309 19.232 19.357 0 13 7 2 0 0 0 0.41742 1 9641 9641 11.64 0.81637 1 893040 18122 5266 12549 12762 21327 21327 0.016028387060714522 HAAAYRNAL 9 Unmodified _HAAAYRNAL_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.76318359375 2 493.761958 985.509363 1.1883 0.00058674 -0.098408 -4.859E-05 1.0899 0.00053815 493.7621022133795 21.004 0.26608 18.311 18.167 18.433 -2.693 23 14 2 0 0 0 0.16226 1 11184 11184 26.884 4.1474 1 4052800 18123 5266 12549 12762 21328 21328 0.016028387060714522 HAAAYRNAL 9 Unmodified _HAAAYRNAL_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.761958 985.509363 -0.40628 -0.00020061 0.89607 0.00044244 0.48978 0.00024184 493.7622808297851 19.309 0.12481 19.309 19.232 19.357 0 0 0 NaN 11.64 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 893040 18124 5266 12549 12762 0.016028387060714522 HAADDGGF 8 Unmodified _HAADDGGF_ 0 0 0 ENST00000570923.1_1_17:78185753-78194107:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1638488769531 2 395.161742 788.308932 NaN NaN NaN NaN NaN NaN NaN 16.114 1 16.114 15.614 16.614 0 0 0 0 0.97444 1 7829 7829 2.8892 2.0956 1 18125 15483 12550 12763 21329 21329 -0.09369055681372629 HAADVFEAY 9 Unmodified _HAADVFEAY_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7325744628906 2 511.732532 1021.45051 0.10306 5.2742E-05 -0.099903 -5.1124E-05 0.0031618 1.618E-06 511.7324080082608 44.102 0.27484 44.102 43.99 44.265 0 43 14 4 0 0 0 0.0094915 2 24055 23948;24055 81.864 56.465 1 74837000 18126 4011 12551 12764 21330;21331 21331 -0.059356823789016744 HAADVFEAY 9 Unmodified _HAADVFEAY_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.731201171875 2 511.732532 1021.45051 0.91152 0.00046645 -0.536 -0.00027429 0.37551 0.00019216 511.7322364669335 49.675 0.42066 44.136 43.956 44.377 -5.5391 48 26 2 0 0 0 0.019979 2 30984 30984;31118 63.563 45.416 1 85027000 18127 4011 12551 12764 21332;21333 21332 -0.059356823789016744 HAAEALLL 8 Unmodified _HAAEALLL_ 0 0 0 ENSG00000070190|ENST00000512369|DAPP1;nc|ENSG00000070190|Q9UN19-2|DAPP1;ENST00000507994.1_1_4:100738070-100784201:+|nuORF ENSG00000070190|ENST00000512369|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2458801269531 2 419.245078 836.475603 -0.03808 -1.5965E-05 0.82146 0.00034439 0.78338 0.00032843 419.24546475221416 52.519 0.25539 52.519 52.402 52.657 0 14 11 2 0 0 0 0.50586 1 29078 29078 34.187 7.8461 1 1508600 18128 1021 12552 12765 21334 21334 0.0508241721433933 HAAEFVPSF 9 Unmodified _HAAEFVPSF_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.770751953125 2 502.745442 1003.47633 1.1732 0.0005898 2.7916 0.0014035 3.9648 0.0019933 502.7467484107395 63.738 0.23988 57.563 57.375 57.615 -6.1757 16 12 2 0 0 0 0.15672 1 41207 41207 26.884 16.06 1 4918500 18129 2129 12553 12766 21335 21335 -0.025267881366062284 HAAEFVPSF 9 Unmodified _HAAEFVPSF_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.745442 1003.47633 -0.057866 -2.9092E-05 1.4781 0.00074312 1.4203 0.00071403 502.74658336162184 58.013 0.20895 57.523 57.41 57.619 -0.48974 -0.01995 -0.00036085 NaN 20.454 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 815510 18130 2129 12553 12766 -0.025267881366062284 HAAEIITDL 9 Unmodified _HAAEIITDL_ 0 0 0 ENSG00000162613|ENST00000370768|FUBP1;nc|ENSG00000162613|Q96AE4-2|FUBP1 ENSG00000162613|ENST00000370768|FUBP1 ENSG00000162613|ENST00000370768|FUBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7643432617188 2 491.763832 981.513111 0.54362 0.00026733 0.0051352 2.5253E-06 0.54875 0.00026986 491.76375078817875 51.461 0.31622 51.461 51.326 51.642 0 31 14 3 0 0 0 0.0090851 1 28406 28406 85.357 43.262 1 6175900 18131 6883 12554 12767 21336 21336 0.02161463689287757 HAAESISSPY 10 Unmodified _HAAESISSPY_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2483520507812 2 531.248546 1060.48254 -0.42923 -0.00022803 -0.87142 -0.00046294 -1.3007 -0.00069097 531.2485726445715 27.759 0.33711 27.759 27.508 27.845 0 21 15 2 0 0 0 0.024981 1 14312 14312 71.134 42.639 1 2150200 18132 8162 12555 12768 21337 21337 -0.04528314695744484 HAAFGSLPAL 10 Unmodified _HAAFGSLPAL_ 0 0 0 ENST00000510031.1_1_4:73933824-73935208:-|nuORF;ENST00000421792.2_1_4:73934317-73935208:-|nuORF ENST00000510031.1_1_4:73933824-73935208:-|nuORF ENST00000510031.1_1_4:73933824-73935208:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2269592285156 2 492.269084 982.523616 0.16073 7.9124E-05 -0.015296 -7.53E-06 0.14544 7.1594E-05 492.268815040324 39.719 0.24018 39.422 39.308 39.548 -0.29716 26 11 3 0 0 0 0.23489 1 21038 21038 7.9102 1.5561 1 6764800 18133 13112 12556 12769 21338 21338 0.031654911343593994 HAAFGSLPAL 10 Unmodified _HAAFGSLPAL_ 0 0 0 ENST00000510031.1_1_4:73933824-73935208:-|nuORF;ENST00000421792.2_1_4:73934317-73935208:-|nuORF ENST00000510031.1_1_4:73933824-73935208:-|nuORF ENST00000510031.1_1_4:73933824-73935208:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.269084 982.523616 0.54462 0.0002681 -0.030268 -1.49E-05 0.51435 0.0002532 492.26966857944024 39.363 0.1268 39.374 39.281 39.408 0.011456 -0.13102 0.00020653 NaN 7.9102 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1363700 18134 13112 12556 12769 0.031654911343593994 HAAGFAYTY 9 Unmodified _HAAGFAYTY_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7293395996094 2 500.729792 999.445031 0.42622 0.00021342 -0.50335 -0.00025204 -0.077134 -3.8623E-05 500.729442266567 39.564 0.49102 39.564 39.341 39.832 0 84 23 5 0 0 0 0.034897 2 21150 21150;21265 52.693 41.053 1 143380000 18135 7532 12557 12770 21339;21340 21339 -0.05471361170725686 HAAGFAYTY 9 Unmodified _HAAGFAYTY_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7295532226562 2 500.729792 999.445031 -0.15035 -7.5286E-05 0.47848 0.00023959 0.32812 0.0001643 500.7299529406324 39.877 0.39015 39.58 39.392 39.782 -0.29716 74 18 5 0 0 0 0.034897 2 20994 20994;21102 52.693 35.751 1 104550000 18136 7532 12557 12770 21341;21342 21341 -0.05471361170725686 HAAGFAYTY 9 Unmodified _HAAGFAYTY_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.72998046875 2 500.729792 999.445031 0.30181 0.00015113 0.20337 0.00010183 0.50518 0.00025296 500.7298212079682 39.527 0.30798 39.538 39.387 39.695 0.011452 34 14 3 0 0 0 0.034897 1 21037 21037 52.693 35.751 1 9823700 18137 7532 12557 12770 21343 21343 -0.05471361170725686 HAAGFAYTY 9 Unmodified _HAAGFAYTY_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7305908203125 2 500.729792 999.445031 0.69411 0.00034756 0.17595 8.8105E-05 0.87006 0.00043567 500.7297905980036 44.302 0.6347 39.45 39.133 39.768 -4.852 145 45 4 0 0 0 0.013419 3 26854 26854;26983;27119 70.865 43.981 1 661850000 18138 7532 12557 12770 21344;21345;21346 21344 -0.05471361170725686 HAAHFARAF 9 Unmodified _HAAHFARAF_ 0 0 0 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.264892578125 2 514.264668 1026.51478 NaN NaN NaN NaN NaN NaN NaN 78.109 1 78.109 77.609 78.609 0 0 0 0 0.84369 1 43414 43414 2.3027 0.24298 1 18139 4250 12558 12771 21347 21347 0.0025856228855900554 HAAHIISEL 9 Unmodified _HAAHIISEL_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3;ENST00000487406.2_1_9:133495824-133506568:+|nuORF ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7718200683594 2 495.771991 989.529429 -0.3598 -0.00017838 -1.3647 -0.00067657 -1.7245 -0.00085495 495.77150894641903 35.104 0.3078 35.104 34.919 35.227 0 35 15 4 0 0 0 0.023761 1 18556 18556 59.795 2.3239 1 11615000 18140 2478 12559 12772 21348 21348 0.03424589646044751 HAAHIISEL 9 Unmodified _HAAHIISEL_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3;ENST00000487406.2_1_9:133495824-133506568:+|nuORF ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7716064453125 2 495.771991 989.529429 0.85954 0.00042613 -1.2864 -0.00063775 -0.42684 -0.00021162 495.7706914970667 39.517 0.56015 35.066 34.734 35.294 -4.4509 46 34 2 0 0 0 0.0089973 1 23457 23457 86.121 7.9719 1 28293000 18141 2478 12559 12772 21349 21349 0.03424589646044751 HAAKVILQV 9 Unmodified _HAAKVILQV_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 489.8091125488281 2 489.808377 977.6022 NaN NaN NaN NaN NaN NaN NaN 40.307 1 35.778 35.278 36.278 -4.5294 0 0 0 0.01764 1 24055 24055 81.613 30.758 1 18142 8367 12560 12773 21350 21350 0.11250343439485277 HAALETQTL 9 Unmodified _HAALETQTL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2613525390625 2 492.261456 982.50836 -0.47393 -0.0002333 0.52177 0.00025685 0.047839 2.3549E-05 492.26169392663536 31.91 0.46442 31.91 31.739 32.204 0 81 22 5 0 0 0 0.0090851 2 16598 16598;16700 85.357 45.399 1 118880000 18143 8636 12561 12774 21351;21352 21351 0.016405795465175288 HAALETQTL 9 Unmodified _HAALETQTL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2620239257812 2 492.261456 982.50836 0.23192 0.00011417 0.97508 0.00047999 1.207 0.00059416 492.2623484012934 31.869 0.19525 31.74 31.623 31.818 -0.12915 10 7 2 0 0 0 0.045537 1 16602 16602 46.921 33.413 1 758720 18144 8636 12561 12774 21353 21353 0.016405795465175288 HAALETQTL 9 Unmodified _HAALETQTL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2616882324219 2 492.261456 982.50836 0.4882 0.00024032 0.052514 2.585E-05 0.54071 0.00026617 492.26153263179015 36.309 0.55131 32.116 31.836 32.388 -4.1928 110 33 4 0 0 0 0.0083087 3 21212 21090;21212;21346 97.075 48.729 1 471410000 18145 8636 12561 12774 21354;21355;21356 21355 0.016405795465175288 HAALETQTL 9 Unmodified _HAALETQTL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 983.5155029296875 1 983.515636 982.50836 0.48785 0.0004798 -0.33575 -0.00033021 0.1521 0.00014959 983.5153643424592 36.301 0.36466 32.109 31.899 32.263 -4.1928 36 21 2 0 0 0 9.232E-11 1 21197 21197 176.84 104.92 1 25218000 18146 8636 12561 12774 21357 21357 0.016405795465175288 HAALHLMAF 9 Oxidation (M) _HAALHLM(Oxidation (M))AF_ HAALHLM(1)AF HAALHLM(80)AF 0 0 1 ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3 ENST00000535177.1_1_11:61121022-61124194:-|nuORF ENST00000535177.1_1_11:61121022-61124194:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7631225585938 2 513.763112 1025.51167 0.69302 0.00035605 -1.1513 -0.00059151 -0.4583 -0.00023546 513.7625815933781 43.236 0.19072 43.221 43.164 43.355 -0.015667 13 8 2 0 0 0 0.01018 1 23197 23197 79.935 64.087 1 4883300 18147 6838 12562 12775 21358 21358 1183 -6.448880435527826E-05 HAALHLMAF 9 Oxidation (M) _HAALHLM(Oxidation (M))AF_ HAALHLM(1)AF HAALHLM(130)AF 0 0 1 ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3 ENST00000535177.1_1_11:61121022-61124194:-|nuORF ENST00000535177.1_1_11:61121022-61124194:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 513.764892578125 2 513.763112 1025.51167 NaN NaN NaN NaN NaN NaN NaN 47.687 1 42.453 41.953 42.953 -5.2339 0 0 0 0.0038686 1 29622 29622 126.6 102.39 1 18148 6838 12562 12775 21359 21359 1183 -6.448880435527826E-05 HAALHLMAF 9 Unmodified _HAALHLMAF_ 0 0 0 ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3 ENST00000535177.1_1_11:61121022-61124194:-|nuORF ENST00000535177.1_1_11:61121022-61124194:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7660217285156 2 505.765655 1009.51676 0.85951 0.00043471 -0.92612 -0.0004684 -0.06661 -3.3689E-05 505.7651415565518 90.384 0.62489 84.209 83.968 84.593 -6.1757 52 36 2 0 0 0 0.016115 1 59654 59654 67.413 45.666 1 13282000 18149 6838 12562 12776 21360 21360 0.012378549821619345 HAALNGHKDI 10 Unmodified _HAALNGHKDI_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MSMS AL20221201_MKP_PDAC_01 4 359.1940307617188 3 359.192957 1074.55704 NaN NaN NaN NaN NaN NaN NaN 25.451 1 22.568 22.068 23.068 -2.8831 0 0 0 0.5926 1 13938 13938 18.373 0 1 18150 9324 12563 12777 21361 21361 0.022744929062810115 HAAMFRHF 8 Unmodified _HAAMFRHF_ 0 0 0 ENSG00000178750|ENST00000315099|STX19 ENSG00000178750|ENST00000315099|STX19 ENSG00000178750|ENST00000315099|STX19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2477722167969 2 508.747796 1015.48104 -0.11543 -5.8722E-05 0.64969 0.00033053 0.53427 0.00027181 508.7483003154782 24.805 0.20662 24.805 24.697 24.904 0 12 9 2 0 0 0 8.7369 1 12719 12719 6.3541 1.1234 1 423170 18151 8771 12564 12778 21362 21362 -0.026081824748416693 HAAMLGLMY 9 2 Oxidation (M) _HAAM(Oxidation (M))LGLM(Oxidation (M))Y_ HAAM(1)LGLM(1)Y HAAM(56)LGLM(56)Y 0 0 2 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7393798828125 2 519.740988 1037.46742 1.0526 0.00054708 -1.017 -0.00052856 0.035647 1.8527E-05 519.7405297844674 42.808 0.49684 42.808 42.488 42.985 0 56 25 4 0 0 0 0.028712 2 23072 23072;23192 56.048 37.913 1 17561000 18152 3388 12565 12779 21363;21364 21363 601;602 -0.04981221088951315 HAAMLGLMY 9 2 Oxidation (M) _HAAM(Oxidation (M))LGLM(Oxidation (M))Y_ HAAM(1)LGLM(1)Y HAAM(56)LGLM(56)Y 0 0 2 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.740478515625 2 519.740988 1037.46742 0.065879 3.424E-05 -1.3829 -0.00071873 -1.317 -0.00068449 519.7407909809834 43.062 0.55011 42.752 42.379 42.93 -0.31039 70 24 4 0 0 0 0.028712 3 22764 22764;22874;22984 56.048 37.913 1 29595000 18153 3388 12565 12779 21365;21366;21367 21365 601;602 -0.04981221088951315 HAAMLGLMY 9 2 Oxidation (M) _HAAM(Oxidation (M))LGLM(Oxidation (M))Y_ HAAM(1)LGLM(1)Y HAAM(56)LGLM(56)Y 0 0 2 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7413330078125 2 519.740988 1037.46742 0.47697 0.0002479 -0.22877 -0.0001189 0.2482 0.000129 519.740800235514 42.719 0.47107 42.711 42.4 42.871 -0.0088196 39 21 2 0 0 0 0.028712 1 22888 22888 56.048 41.467 1 4693300 18154 3388 12565 12779 21368 21368 601;602 -0.04981221088951315 HAAMLGLMY 9 2 Oxidation (M) _HAAM(Oxidation (M))LGLM(Oxidation (M))Y_ HAAM(1)LGLM(1)Y HAAM(56)LGLM(56)Y 0 0 2 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7410278320312 2 519.740988 1037.46742 1.233 0.00064086 -0.39223 -0.00020386 0.84081 0.000437 519.7406633992381 47.77 0.69438 42.536 42.229 42.923 -5.2339 63 41 2 0 0 0 0.028712 1 29742 29742 56.048 35.177 1 38944000 18155 3388 12565 12779 21369 21369 601;602 -0.04981221088951315 HAAMLGLMY 9 Oxidation (M) _HAAMLGLM(Oxidation (M))Y_ HAAMLGLM(1)Y HAAM(-36)LGLM(36)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7441101074219 2 511.743531 1021.47251 0.11848 6.0633E-05 0.31371 0.00016054 0.43219 0.00022117 511.74362129396815 54.081 0.22036 53.614 53.507 53.727 -0.46664 17 10 2 0 0 0 0.047696 1 29312 29312 45.75 34.636 2 2593300 18156 3388 12565 12780 21370 21370 601;602 -0.037369172263424844 HAAMLGLMY 9 Oxidation (M) _HAAMLGLM(Oxidation (M))Y_ HAAMLGLM(1)Y HAAM(-36)LGLM(36)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7434692382812 2 511.743531 1021.47251 0.015971 8.1732E-06 -0.49842 -0.00025506 -0.48245 -0.00024689 511.74331743229146 54.298 0.17379 53.831 53.687 53.861 -0.46664 17 8 3 0 0 0 0.047696 1 29433 29433 45.75 30.912 2 4764700 18157 3388 12565 12780 21371 21371 601;602 -0.037369172263424844 HAAMLGLMY 9 Oxidation (M) _HAAMLGLM(Oxidation (M))Y_ HAAMLGLM(1)Y HAAM(-41)LGLM(41)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.743408203125 2 511.743531 1021.47251 0.10986 5.622E-05 0.024106 1.2336E-05 0.13397 6.8557E-05 511.7434723210465 53.927 0.19593 53.86 53.745 53.941 -0.066936 23 9 3 0 0 0 0.028712 1 29286 29286 56.048 44.934 2 1938300 18158 3388 12565 12780 21372 21372 601;602 -0.037369172263424844 HAAMLGLMY 9 Oxidation (M) _HAAMLGLM(Oxidation (M))Y_ HAAMLGLM(1)Y HAAM(-36)LGLM(36)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7442932128906 2 511.743531 1021.47251 NaN NaN NaN NaN NaN NaN NaN 53.743 1 53.679 53.179 54.179 -0.063423 0 0 0 0.09083 1 29168 29168 45.75 39.396 2 18159 3388 12565 12780 21373 21373 601;602 -0.037369172263424844 HAAMLGLMY 9 Oxidation (M) _HAAM(Oxidation (M))LGLMY_ HAAM(0.999)LGLM(0.001)Y HAAM(31)LGLM(-31)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7469787597656 2 511.743531 1021.47251 0.74578 0.00038165 0.97889 0.00050094 1.7247 0.00088259 511.7442119875217 57.175 0.5889 51.148 50.907 51.496 -6.0275 67 33 3 0 0 0 0.047696 1 36505 36505 45.75 31.168 2 45305000 18160 3388 12565 12780 21374 21374 601;602 -0.037369172263424844 HAAMLGLMY 9 Oxidation (M) _HAAMLGLM(Oxidation (M))Y_ HAAMLGLM(1)Y HAAM(-41)LGLM(41)Y 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7444458007812 2 511.743531 1021.47251 0.79445 0.00040656 0.07813 3.9982E-05 0.87258 0.00044654 511.74361307304224 60.171 0.66621 54.056 53.713 54.379 -6.1147 83 35 3 0 0 0 0.028712 3 38658 38536;38658;38787 56.048 44.934 2 57792000 18161 3388 12565 12780 21375;21376;21377 21376 601;602 -0.037369172263424844 HAAMLGLMY 9 Unmodified _HAAMLGLMY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7463989257812 2 503.746073 1005.47759 1.0548 0.00053135 -0.86701 -0.00043675 0.18778 9.4593E-05 503.7459901385645 68.973 0.51077 62.797 62.518 63.029 -6.1757 48 27 4 0 0 0 0.028712 1 45007 45007 56.048 36.609 1 45301000 18162 3388 12565 12781 21378 21378 -0.024926133637336534 HAANMLIGP 9 Unmodified _HAANMLIGP_ 0 0 0 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.7623901367188 2 462.242012 922.469472 1.4673 0.00067826 -0.39477 -0.00018248 1.0725 0.00049578 462.2418263706028 47.54 0.39631 42.306 42.072 42.468 -5.2339 34 22 2 0 0 0 0.16229 1 29396 29396 18.135 3.5533 1 18187000 + 18163 17875 12566 12782 21379 21379 0.005135757111702333 HAANQSYQY 9 Unmodified _HAANQSYQY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2385864257812 2 541.238513 1080.46247 -0.34513 -0.0001868 0.47087 0.00025485 0.12574 6.8054E-05 541.2387177571673 18.939 0.50733 18.939 18.586 19.094 0 120 44 4 0 0 0 0.010818 2 9467 9370;9467 78.149 47.925 1 8889600 18164 4211 12567 12783 21380;21381 21381 -0.07454065635693041 HAANQSYQY 9 Unmodified _HAANQSYQY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2398071289062 2 541.238513 1080.46247 0.087833 4.7539E-05 -0.30236 -0.00016365 -0.21453 -0.00011611 541.2384001129636 18.831 0.20217 18.837 18.747 18.949 0.0060463 18 10 2 0 0 0 0.07916 1 9542 9542 37.974 24.466 1 1151200 18165 4211 12567 12783 21382 21382 -0.07454065635693041 HAANQSYQY 9 Unmodified _HAANQSYQY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2391967773438 2 541.238513 1080.46247 0.98831 0.00053491 -0.0079385 -4.2966E-06 0.98037 0.00053062 541.238530147033 20.171 0.4062 17.514 17.257 17.663 -2.6564 60 27 3 0 0 0 0.010818 2 10731 10626;10731 78.149 51.138 1 10019000 18166 4211 12567 12783 21383;21384 21384 -0.07454065635693041 HAANTVVY 8 Unmodified _HAANTVVY_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7248840332031 2 437.72451 873.434466 -0.16022 -7.0134E-05 -0.22366 -9.7901E-05 -0.38388 -0.00016803 437.72440510958404 23.626 0.30756 23.626 23.427 23.735 0 25 15 2 0 0 0 0.55032 2 11984 11984;12087 30.225 12.09 1 825440 18167 7137 12568 12784 21385;21386 21385 -0.007313438251344451 HAANTVVY 8 Unmodified _HAANTVVY_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7249755859375 2 437.72451 873.434466 0.48807 0.00021364 0.57774 0.00025289 1.0658 0.00046653 437.72451781963105 26.392 0.27918 23.441 23.281 23.56 -2.9511 19 14 2 0 0 0 0.19792 1 14547 14547 70.716 38.599 1 5128300 18168 7137 12568 12784 21387 21387 -0.007313438251344451 HAAPQPQKL 9 Unmodified _HAAPQPQKL_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19;nc|ENSG00000278259|Q96H55-2|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MSMS AL20221201_MKP_PDAC_01 4 495.2805480957031 2 495.279983 988.545414 NaN NaN NaN NaN NaN NaN NaN 18.247 1 15.626 15.126 16.126 -2.6215 0 0 0 0.14 1 9601 9601 37.974 23.136 1 18169 10932 12569 12785 21388 21388 0.050682958829384006 HAAQFLQDM 9 Oxidation (M) _HAAQFLQDM(Oxidation (M))_ HAAQFLQDM(1) HAAQFLQDM(92) 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7450561523438 2 538.745116 1075.47568 -0.14894 -8.0242E-05 -0.60102 -0.0003238 -0.74996 -0.00040404 538.7451068960103 30.946 0.56571 30.946 30.587 31.152 0 51 27 3 0 0 0 0.0082661 3 16144 15940;16043;16144 100.37 82.237 1 47594000 18170 4309 12570 12786 21389;21390;21391 21391 775 -0.05903950848005479 HAAQFLQDM 9 Oxidation (M) _HAAQFLQDM(Oxidation (M))_ HAAQFLQDM(1) HAAQFLQDM(100) 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.745361328125 2 538.745116 1075.47568 0.28652 0.00015436 0.025612 1.3798E-05 0.31213 0.00016816 538.745261599893 30.795 0.48992 30.692 30.523 31.013 -0.10269 52 19 3 0 0 0 0.00856 2 16052 15947;16052 100.37 78.625 1 9019800 18171 4309 12570 12786 21392;21393 21393 775 -0.05903950848005479 HAAQFLQDM 9 Oxidation (M) _HAAQFLQDM(Oxidation (M))_ HAAQFLQDM(1) HAAQFLQDM(42) 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7456665039062 2 538.745116 1075.47568 -0.12263 -6.6065E-05 0.40144 0.00021627 0.27881 0.00015021 538.7454792167063 30.75 0.23263 30.78 30.649 30.882 0.030106 15 9 2 0 0 0 0.06187 1 16093 16093 42.095 32.747 1 1296600 18172 4309 12570 12786 21394 21394 775 -0.05903950848005479 HAAQFLQDM 9 Oxidation (M) _HAAQFLQDM(Oxidation (M))_ HAAQFLQDM(1) HAAQFLQDM(120) 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7457885742188 2 538.745116 1075.47568 0.64509 0.00034754 -0.66659 -0.00035912 -0.021495 -1.158E-05 538.745054063277 35.316 1.0739 31.221 30.565 31.639 -4.0951 201 64 4 0 0 0 0.0055767 3 20209 20083;20209;20336 115.69 88.808 1 134730000 18173 4309 12570 12786 21395;21396;21397 21396 775 -0.05903950848005479 HAAQFLQDM 9 Unmodified _HAAQFLQDM_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7699584960938 2 530.747659 1059.48076 0.35359 0.00018767 -2.4093 -0.0012787 -2.0557 -0.0010911 530.7472658175813 48.402 0.25667 48.031 47.905 48.162 -0.37172 39 12 4 0 0 0 0.17275 1 26035 26035 21.747 3.6117 1 7337900 18174 4309 12570 12787 21398 21398 -0.04659646985373911 HAAQFLQDM 9 Unmodified _HAAQFLQDM_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7484741210938 2 530.747659 1059.48076 1.2281 0.00065181 0.13188 6.9995E-05 1.36 0.00072181 530.7478176717977 53.986 0.57083 48.121 47.883 48.454 -5.8653 100 33 4 0 0 0 0.013609 3 34234 34097;34234;34366 88.904 75.396 1 246180000 18175 4309 12570 12787 21399;21400;21401 21400 -0.04659646985373911 HAAQFLQDM 9 Unmodified _HAAQFLQDM_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1060.737548828125 1 1060.48804 1059.48076 1.0532 0.0011169 0.064612 6.852E-05 1.1178 0.0011854 1060.4880025751672 54.012 0.33576 48.147 47.947 48.283 -5.8653 26 19 2 0 0 0 0.02391 1 34110 34110 100.09 76.942 1 9916300 18176 4309 12570 12787 21402 21402 -0.04659646985373911 HAAQIEPY 8 Unmodified _HAAQIEPY_ 0 0 0 REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF REV__ENST00000492092.1_1_22:50644878-50655786:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7294006347656 2 464.729792 927.445031 0.11756 5.4634E-05 -0.65787 -0.00030573 -0.54031 -0.0002511 464.72936428374317 21.343 0.36028 21.343 21.149 21.509 0 59 51 2 0 0 0 0.80044 1 10750 10750 6.3541 0 1 1243900 + 18177 17533 12571 12788 21403 21403 -0.02159361170708962 HAARIINDLL 10 Unmodified _HAARIINDLL_ 0 0 0 nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP nc|ENSG00000088247|Q92945|KHSRP nc|ENSG00000088247|Q92945|KHSRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3330688476562 2 568.332747 1134.65094 0.49665 0.00028226 0.60433 0.00034346 1.101 0.00062572 568.3331061632133 51.007 0.21972 50.593 50.479 50.698 -0.41351 24 10 3 0 0 0 0.095786 1 27472 27472 47.594 20.371 1 2795200 18178 1480 12572 12789 21404 21404 0.08900212008552444 HAARIINDLL 10 Unmodified _HAARIINDLL_ 0 0 0 nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP nc|ENSG00000088247|Q92945|KHSRP nc|ENSG00000088247|Q92945|KHSRP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.332747 1134.65094 1.0795 0.00061353 -3.5589 -0.0020226 -2.4794 -0.0014091 568.3304799524168 50.588 0.10052 50.534 50.449 50.55 -0.053871 -0.029576 -0.0045066 NaN 47.594 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1220400 18179 1480 12572 12789 0.08900212008552444 HAASESLKF 9 Unmodified _HAASESLKF_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.A656Sfs*22|1|0.1|ENSG00000127311|chr12:66315347-66315348|-/A|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2555847167969 2 495.256174 988.497795 -0.22894 -0.00011338 0.56281 0.00027873 0.33387 0.00016535 495.25639376650787 29.245 0.2471 29.245 29.102 29.349 0 24 11 3 0 0 0 0.010818 1 15116 15116 78.149 56.403 1 2958500 18180 3995 12573 12790 21405 21405 0.0030859689210274155 HAASESLKF 9 Unmodified _HAASESLKF_ 0 0 0 ENSG00000127311|ENST00000247815|HELB;nc|ENSG00000127311|Q8NG08-2|HELB;HELB|p.A656Sfs*22|1|0.1|ENSG00000127311|chr12:66315347-66315348|-/A|frameshift_variant ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.7664489746094 2 495.256174 988.497795 0.74804 0.00037047 -1.9064 -0.00094416 -1.1584 -0.00057368 495.2547152167054 31.854 0.30383 28.159 28.035 28.339 -3.6958 31 16 3 0 0 0 0.079233 1 18041 18041 36.127 32.846 1 14677000 18181 3995 12573 12790 21406 21406 0.0030859689210274155 HAASNPPAQY 10 Unmodified _HAASNPPAQY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.248779296875 2 528.24888 1054.48321 -0.19692 -0.00010402 0.2095 0.00011067 0.012582 6.6463E-06 528.248917380895 18.267 0.36024 18.267 18.056 18.417 0 148 49 4 0 0 0 1.1359E-07 2 9067 8973;9067 142.08 115.2 1 6227400 18182 2314;1437 12574 12791 21407;21408 21408 -0.04185475256031168 HAASNPPAQY 10 Unmodified _HAASNPPAQY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7498168945312 2 528.24888 1054.48321 1.0578 0.00055877 -0.59721 -0.00031548 0.46057 0.0002433 528.2486289970294 19.591 0.30417 16.935 16.816 17.12 -2.6564 51 25 3 0 0 0 0.0023019 2 10335 10335;10446 106.94 89.998 1 8547400 18183 2314;1437 12574 12791 21409;21410 21409 -0.04185475256031168 HAASTVQIL 9 Unmodified _HAASTVQIL_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2651062011719 2 470.266542 938.51853 -0.098399 -4.6274E-05 -0.45077 -0.00021198 -0.54917 -0.00025826 470.26623826343223 41.622 0.32387 41.622 41.48 41.804 0 33 16 3 0 0 0 0.012148 1 22441 22441 74.423 26.077 1 18704000 18184 770 12575 12792 21411 21411 0.0468118727176261 HAASVFLTL 9 Unmodified _HAASVFLTL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7715148925781 2 479.77146 957.528367 0.40985 0.00019664 0.37542 0.00018012 0.78528 0.00037675 479.7717674507136 68.75 0.21907 68.27 68.18 68.399 -0.48071 14 9 2 0 0 0 0.052168 1 37588 37588 44.407 17.523 1 771410 18185 5350 12576 12793 21412 21412 0.047903752771503605 HAASVFLTL 9 Unmodified _HAASVFLTL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7716064453125 2 479.77146 957.528367 0.53385 0.00025613 0.0059621 2.8604E-06 0.53981 0.00025899 479.77180868112805 68.289 0.26962 68.314 68.188 68.458 0.025154 37 13 4 0 0 0 0.0094915 1 37514 37514 81.864 43.713 1 3555500 18186 5350 12576 12793 21413 21413 0.047903752771503605 HAATDITGF 9 Unmodified _HAATDITGF_ 0 0 0 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2 nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7267456054688 2 466.727249 931.439946 0.41632 0.00019431 -0.45131 -0.00021064 -0.034988 -1.633E-05 466.72705810647915 40.1 0.26393 40.1 39.993 40.257 0 26 12 3 0 0 0 0.0086179 1 21519 21519 89.427 60.94 1 7442300 18187 1434 12577 12794 21414 21414 -0.028516650333358484 HAATLEINP 9 Unmodified _HAATLEINP_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2573852539062 2 483.256174 964.497795 0.58096 0.00028075 -0.83984 -0.00040586 -0.25888 -0.00012511 483.2557209142557 36.336 0.42448 32.143 31.87 32.295 -4.1928 39 25 2 0 0 0 0.0083938 2 21108 21108;21232 108 59.651 1 41500000 + 18188 24211 12578 12795 21415;21416 21415 0.014125968920893683 HAATLVWWWHL 11 Unmodified _HAATLVWWWHL_ 0 0 0 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 REV__nc|ENSG00000253649|A0A1B0GVH4|PRSS51 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7954406738281 3 473.915535 1418.72478 0.48116 0.00022803 -0.80284 -0.00038048 -0.32168 -0.00015245 474.24943818990255 58.747 0.2158 58.686 58.526 58.741 -0.060719 14 10 2 0 0 0 0.3058 1 31928 31928 1.4551 0 1 1085500 + 18189 24514 12579 12796 21417 21417 0.03216180170898042 HAAVDRWQY 9 Unmodified _HAAVDRWQY_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2788696289062 2 573.277972 1144.54139 0.76999 0.00044142 1.23 0.00070512 2 0.0011465 573.2792196848826 30.324 0.20477 30.244 30.128 30.333 -0.080429 14 7 3 0 0 0 0.1685 1 15745 15745 26.268 2.2476 1 3325700 18190 2001 12580 12797 21418 21418 -0.02509793610761335 HAAVDRWQY 9 Unmodified _HAAVDRWQY_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8554382324219 3 382.521074 1144.54139 1.2738 0.00048726 -0.46879 -0.00017932 0.80501 0.00030793 382.5208761081674 33.329 0.21063 29.343 29.192 29.402 -3.9853 16 11 2 0 0 0 0.07916 1 19090 19090 28.495 15.622 1 11905000 18191 2001 12580 12797 21419 21419 -0.02509793610761335 HAAVGAVDF 9 Unmodified _HAAVGAVDF_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MSMS AL20221201_MKP_PDAC_01 4 443.7242736816406 2 443.72451 885.434466 NaN NaN NaN NaN NaN NaN NaN 46.814 1 41.734 41.234 42.234 -5.0805 0 0 0 0.3092 1 28983 28983 24.674 5.2349 1 18192 1216 12581 12798 21420 21420 -0.012833438251391271 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7324829101562 2 456.732335 911.450116 -0.29124 -0.00013302 -0.4483 -0.00020475 -0.73954 -0.00033777 456.73205236179746 30.124 0.57515 30.124 29.847 30.422 0 106 27 5 0 0 0 0.023761 3 15735 15530;15631;15735 59.795 35.121 1 310820000 18193 6889 12582 12799 21421;21422;21423 21423 -0.009150573080887625 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.45751953125 1 912.457393 911.450116 -0.69892 -0.00063773 0.57241 0.0005223 -0.12651 -0.00011543 912.4574148158781 30.103 0.50704 30.103 29.777 30.285 0 53 26 3 0 0 0 0.013472 3 15676 15570;15676;15678 70.716 52.581 1 5742100 18194 6889 12582 12799 21424;21425;21426 21425 -0.009150573080887625 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7324829101562 2 456.732335 911.450116 0.55072 0.00025153 0.54444 0.00024866 1.0952 0.00050019 456.7325448791851 30.095 0.51561 30.014 29.792 30.308 -0.080429 55 19 4 0 0 0 0.023761 3 15640 15545;15640;15744 59.795 41.66 1 25487000 18195 6889 12582 12799 21427;21428;21429 21428 -0.009150573080887625 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7326354980469 2 456.732335 911.450116 0.23029 0.00010518 0.61368 0.00028029 0.84397 0.00038547 456.7325818594891 29.908 0.42507 29.938 29.734 30.159 0.030104 38 16 3 0 0 0 0.023761 3 15617 15593;15617;15727 59.795 41.66 1 4463700 18196 6889 12582 12799 21430;21431;21432 21431 -0.009150573080887625 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7322692871094 2 456.732335 911.450116 0.87791 0.00040097 -0.48088 -0.00021963 0.39703 0.00018134 456.73198763350564 34.594 0.8782 30.499 30.057 30.935 -4.0951 174 51 5 0 0 0 0.010712 4 20007 19754;19880;20007;20135 78.445 53.771 1 1068999999.9999999 18197 6889 12582 12799 21433;21434;21435;21436 21435 -0.009150573080887625 HAAVPTPGY 9 Unmodified _HAAVPTPGY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.4577026367188 1 912.457393 911.450116 0.39163 0.00035734 0.059761 5.4529E-05 0.45139 0.00041187 912.4572749486582 34.571 0.53886 30.476 30.214 30.752 -4.0951 77 31 3 0 0 0 0.0036753 3 19845 19845;19972;20098 123.1 90.979 1 58553000 18198 6889 12582 12799 21437;21438;21439 21437 -0.009150573080887625 HAAVSFLFAH 10 Unmodified _HAAVSFLFAH_ 0 0 0 REV__ENST00000508179.1_1_5:9549691-9549847:+|nuORF REV__ENST00000508179.1_1_5:9549691-9549847:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3110961914062 2 550.287808 1098.56106 0.34998 0.00019259 -0.9717 -0.00053471 -0.62172 -0.00034213 550.2871878140111 76.058 0.33495 75.579 75.477 75.812 -0.47945 22 13 2 0 0 0 0.22149 1 41604 41604 20.454 7.9221 1 801040 + 18199 28112 12583 12800 21440 21440 0.01572582400012834 HAAVWVPD 8 Unmodified _HAAVWVPD_ 0 0 0 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7264709472656 2 447.727052 893.439552 -0.42637 -0.0001909 -0.045722 -2.0471E-05 -0.4721 -0.00021137 447.7269705809454 30.111 0.47432 30.111 29.888 30.363 0 57 22 3 0 0 0 0.71616 2 15665 15564;15665 15.768 4.9527 1 17705000 18200 8548 12584 12801 21441;21442 21442 -0.011430399625282917 HAAVWVPD 8 Unmodified _HAAVWVPD_ 0 0 0 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.7271728515625 2 447.727052 893.439552 NaN NaN NaN NaN NaN NaN NaN 30.195 1 30.115 29.615 30.615 -0.080429 0 0 0 0.95201 1 15664 15664 10.183 5.4274 1 18201 8548 12584 12801 21443 21443 -0.011430399625282917 HAAVWVPD 8 Unmodified _HAAVWVPD_ 0 0 0 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7276000976562 2 447.727052 893.439552 0.95222 0.00042633 0.032655 1.4621E-05 0.98488 0.00044096 447.72703426439347 34.554 0.53925 30.459 30.196 30.735 -4.0951 66 31 3 0 0 0 0.71616 2 19948 19948;20079 15.768 4.3983 1 63343000 18202 8548 12584 12801 21444;21445 21444 -0.011430399625282917 HAAWSLEE 8 Unmodified _HAAWSLEE_ 0 0 0 REV__MER30_dup2921|chr12:21469267-21469488:+|2.5990099753738933|0.481974385668547|2.43|168.0|10|1|anti-sense REV__MER30_dup2921|chr12:21469267-21469488:+|2.5990099753738933|0.481974385668547|2.43|168.0|10|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7194519042969 2 471.719424 941.424296 -0.49239 -0.00023227 -0.21652 -0.00010214 -0.70891 -0.00033441 471.71934634978146 28.022 0.57074 28.022 27.721 28.292 0 76 31 3 0 0 0 0.80044 1 14481 14481 6.3541 0.59368 1 9100400 + 18203 29461 12585 12802 21446 21446 -0.04875951550366153 HACATHNT 8 Unmodified _HACATHNT_ 0 0 0 REV__ENSG00000169347|ENST00000302555|GP2 REV__ENSG00000169347|ENST00000302555|GP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 854.3594970703125 1 854.357361 853.350085 1.4278 0.0012199 1.2658 0.0010814 2.6936 0.0023013 854.3583782479534 103.57 0.055679 97.393 97.353 97.409 -6.1757 16 9 2 0 0 0 0.80975 1 69426 69426 0.79363 0 1 14257000 + 18204 22394 12586 12803 21447 21447 -0.08245617913541992 HACELREIM 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))ELREIM_ HAC(1)ELREIM HAC(48)ELREIM 0 1 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MSMS AL20221201_MKP_PDAC_01 4 579.7728271484375 2 579.773351 1157.53215 NaN NaN NaN NaN NaN NaN NaN 38.817 1 34.366 33.866 34.866 -4.4509 0 0 0 0.08368 1 22956 22956 47.594 11.467 1 18205 1323 12587 12804 21448 21448 119 -0.040316462829650845 HACEMCGKAF 10 2 Carbamidomethyl (C),Oxidation (M) _HAC(Carbamidomethyl (C))EM(Oxidation (M))C(Carbamidomethyl (C))GKAF_ HAC(1)EMC(1)GKAF HACEM(1)CGKAF HAC(50)EMC(50)GKAF HACEM(50)CGKAF 0 2 1 nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000103495|P56270-3|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000103495|P56270-3|MAZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.7409057617188 2 613.741193 1225.46783 0.12629 7.7509E-05 0.18996 0.00011658 0.31624 0.00019409 613.7412983747552 16.703 0.18543 14.147 14.065 14.25 -2.557 39 30 2 0 0 0 0.087043 1 8655 8655 49.554 35.149 1 2409100 18206 2146;4822 12588 12805 21449 21449 215;216 372 -0.1358816943140937 HACEMCGKAF 10 2 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))EMC(Carbamidomethyl (C))GKAF_ HAC(1)EMC(1)GKAF HAC(100)EMC(100)GKAF 0 2 0 nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000103495|P56270-3|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000103495|P56270-3|MAZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.7437133789062 2 605.743736 1209.47292 -0.37613 -0.00022784 0.53476 0.00032392 0.15863 9.6088E-05 605.7438930224495 25.182 0.20477 22.299 22.183 22.387 -2.8831 38 21 2 0 0 0 0.0044938 1 13725 13725 100.09 72.867 1 9453300 18207 2146;4822 12588 12806 21450 21450 215;216 -0.12343865568800538 HACGVATDM 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))GVATDM_ HAC(1)GVATDM HAC(78)GVATDM 0 1 0 ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD ENSG00000138780|ENST00000515279|GSTCD ENSG00000138780|ENST00000515279|GSTCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.1987915039062 2 481.196945 960.379336 0.34002 0.00016362 0.25132 0.00012093 0.59134 0.00028455 481.1971365900871 24.166 0.25258 21.339 21.196 21.449 -2.8273 16 13 2 0 0 0 0.010712 1 13125 13125 78.445 49.958 1 3283000 18208 5106 12589 12807 21451 21451 522 -0.10243841679584875 HACGVIATI 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))GVIATI_ HAC(1)GVIATI HAC(110)GVIATI 0 1 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 941.49072265625 1 941.487313 940.480036 1.0065 0.00094764 0.12336 0.00011614 1.1299 0.0010638 941.4877485765854 47.53 0.39631 42.296 42.072 42.468 -5.2339 48 22 3 0 0 0 0.0088154 2 29540 29405;29540 106.85 39.81 1 15879000 18209 9183 12590 12808 21452;21453 21453 856 0.00741558365587025 HACGVIATI 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))GVIATI_ HAC(1)GVIATI HAC(71)GVIATI 0 1 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2479858398438 2 471.247295 940.480036 1.4069 0.000663 -0.18464 -8.7011E-05 1.2223 0.00057599 471.2473354857467 47.472 0.7113 42.238 42 42.711 -5.2339 117 42 4 0 0 0 0.013419 2 29467 29467;29595 70.865 36.677 1 256490000 18210 9183 12590 12808 21454;21455 21454 856 0.00741558365587025 HACGVIATIAF 11 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))GVIATIAF_ HAC(1)GVIATIAF HAC(46)GVIATIAF 0 1 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3026733398438 2 580.300059 1158.58556 0.88601 0.00051415 -2.798 -0.0016237 -1.912 -0.0011095 580.3004695576536 83.095 0.32357 76.919 76.846 77.17 -6.1757 23 17 2 0 0 0 0.072482 1 54634 54634 46.021 20.622 1 11221000 18211 9183 12591 12809 21456 21456 856 0.012614744912070819 HACLHLLHSL 10 Unmodified _HACLHLLHSL_ 0 0 0 REV__ENST00000533607.1_2_12:55377941-55378527:-|nuORF REV__ENST00000533607.1_2_12:55377941-55378527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2088317871094 3 381.874571 1142.60188 0.59329 0.00022656 2.3249 0.00088781 2.9182 0.0011144 381.876357686809 46.626 0.45168 46.289 46.073 46.524 -0.33664 71 22 5 0 0 0 0.44373 1 25038 25038 12.175 0.68004 1 23328000 + 18212 28482 12592 12810 21457 21457 0.0362860044797344 HACPECGKAF 10 2 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))PEC(Carbamidomethyl (C))GKAF_ HAC(1)PEC(1)GKAF HAC(48)PEC(48)GKAF 0 2 0 ENSG00000167685|ENST00000337080|ZNF444;nc|ENSG00000167685|Q8N0Y2-2|ZNF444 ENSG00000167685|ENST00000337080|ZNF444 ENSG00000167685|ENST00000337080|ZNF444 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.75244140625 2 588.749876 1175.4852 1.0192 0.00060003 2.2015 0.0012961 3.2207 0.0018962 588.7511142502058 19.885 0.19491 17.228 17.174 17.369 -2.6564 18 10 2 0 0 0 0.095786 1 10569 10569 47.594 27.18 1 1797100 18213 7656 12593 12811 21458 21458 744;745 -0.0955250583410816 HACPLLSTL 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))PLLSTL_ HAC(1)PLLSTL HAC(67)PLLSTL 0 1 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2689208984375 2 506.268227 1010.5219 2.1499 0.0010884 -2.3325 -0.0011809 -0.18262 -9.2456E-05 506.26674258445536 62.699 0.46934 56.523 56.23 56.7 -6.1757 52 23 3 0 0 0 0.016494 2 40431 40431;40565 67.035 18.702 1 21750000 18214 6769 12594 12812 21459;21460 21459 669 0.01706114054104546 HACQRLHQ 8 Unmodified _HACQRLHQ_ 0 0 0 ENSG00000053371|ENST00000235835|AKR7A2;ENST00000492217.1_1_1:19634582-19638531:-|nuORF ENSG00000053371|ENST00000235835|AKR7A2 ENSG00000053371|ENST00000235835|AKR7A2 MSMS AL20221201_MKP_PDAC_01 4 496.7449340820312 2 496.745785 991.477017 NaN NaN NaN NaN NaN NaN NaN 21.538 1 18.803 18.303 19.303 -2.7348 0 0 0 0.85111 1 11546 11546 20.871 1.6142 1 18215 744 12595 12813 21461 21461 -0.019062719685621232 HACSNISSIM 10 Unmodified _HACSNISSIM_ 0 0 0 REV__ENSG00000203663|ENST00000641771|OR2L2 REV__ENSG00000203663|ENST00000641771|OR2L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7417602539062 2 531.738976 1061.4634 NaN NaN NaN NaN NaN NaN NaN 77.171 1 77.171 76.671 77.671 0 0 0 0 0.97302 1 42902 42902 3.5965 0.60125 1 + 18216 24114 12596 12814 21462 21462 -0.06487310582679129 HACSSIIKM 9 Carbamidomethyl (C),Oxidation (M) _HAC(Carbamidomethyl (C))SSIIKM(Oxidation (M))_ HAC(1)SSIIKM HACSSIIKM(1) HAC(93)SSIIKM HACSSIIKM(93) 0 1 1 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7578125 2 531.757169 1061.49979 0.90039 0.00047879 -1.0081 -0.00053609 -0.10775 -5.7298E-05 531.7569554138859 19.206 0.36909 16.55 16.361 16.73 -2.6564 54 25 3 0 0 0 0.0082475 2 10081 10081;10183 92.653 63.572 1 11316000 18217 3800 12597 12815 21463;21464 21463 385 669 -0.028504336859441537 HACSSIIKM 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))SSIIKM_ HAC(1)SSIIKM HAC(100)SSIIKM 0 1 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.76025390625 2 523.759712 1045.50487 0.66532 0.00034847 -0.73677 -0.00038589 -0.071457 -3.7426E-05 523.7595011228202 33.077 0.35225 29.221 29.061 29.413 -3.8562 34 22 2 0 0 0 0.0087873 2 19016 18887;19016 103.35 70.568 1 33574000 18218 3800 12597 12816 21465;21466 21466 385 -0.0160612982335806 HACTHQISL 9 Carbamidomethyl (C) _HAC(Carbamidomethyl (C))THQISL_ HAC(1)THQISL HAC(120)THQISL 0 1 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.75830078125 2 533.758558 1065.50256 0.42716 0.000228 0.02336 1.2468E-05 0.45052 0.00024047 533.7590214133805 27.279 0.37603 24.242 24.059 24.435 -3.0365 44 18 3 0 0 0 0.0038489 2 15174 15063;15174 122.18 82.23 1 45705000 18219 9631 12598 12817 21467;21468 21468 884 -0.027568422367949097 HADARECAI 9 Unmodified _HADARECAI_ 0 0 0 ENSG00000198796|ENST00000361673|ALPK2;ENST00000587399.1_1_18:56211895-56246399:-|nuORF;ENST00000590662.1_1_18:56246030-56247365:-|nuORF ENSG00000198796|ENST00000361673|ALPK2 ENSG00000198796|ENST00000361673|ALPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2293395996094 2 493.229633 984.444714 -0.35205 -0.00017364 -0.47956 -0.00023653 -0.83161 -0.00041018 493.2296018168018 25.182 0.32549 25.182 25.02 25.346 0 40 16 3 0 0 0 0.46577 1 12878 12878 9.3474 1.4373 1 3324700 18220 10154 12599 12818 21469 21469 -0.048131041622241355 HADDFIQEM 9 Oxidation (M) _HADDFIQEM(Oxidation (M))_ HADDFIQEM(1) HADDFIQEM(120) 0 0 1 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2322387695312 2 561.232039 1120.44952 0.28438 0.0001596 -0.040865 -2.2935E-05 0.24351 0.00013667 561.2321285684949 31.227 0.46703 31.227 30.974 31.441 0 90 22 6 0 0 0 0.0044708 3 16256 16157;16256;16360 118.89 101.95 1 36820000 18221 10258 12600 12819 21470;21471;21472 21471 1666 -0.10588264810098735 HADDFIQEM 9 Oxidation (M) _HADDFIQEM(Oxidation (M))_ HADDFIQEM(1) HADDFIQEM(120) 0 0 1 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2325439453125 2 561.232039 1120.44952 1.4467 0.00081196 -0.55833 -0.00031335 0.88842 0.00049861 561.2319187211174 35.8 0.6117 31.607 31.336 31.948 -4.1928 117 38 4 0 0 0 0.0055767 3 20728 20728;20864;21013 115.69 92.544 1 43566000 18222 10258 12600 12819 21473;21474;21475 21473 1666 -0.10588264810098735 HADDFIQEM 9 Unmodified _HADDFIQEM_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2354736328125 2 553.234581 1104.45461 0.2122 0.0001174 -0.96171 -0.00053205 -0.7495 -0.00041465 553.2340428753556 48.975 0.32008 48.975 48.808 49.128 0 39 15 3 0 0 0 0.019303 1 26862 26862 64.236 46.101 1 13896000 18223 10258 12600 12820 21476 21476 -0.09343960947489904 HADDFIQEM 9 Unmodified _HADDFIQEM_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.234130859375 2 553.234581 1104.45461 1.1699 0.00064721 -0.88102 -0.00048741 0.28884 0.0001598 553.2342848247496 55.368 0.48242 49.447 49.223 49.706 -5.9211 86 29 4 0 0 0 0.0055767 3 35120 35120;35261;35389 115.69 69.671 1 140960000 18224 10258 12600 12820 21477;21478;21479 21477 -0.09343960947489904 HADDHRATL 9 Unmodified _HADDHRATL_ 0 0 0 REV__ENST00000536384.2_1_1:31905978-31906919:+|nuORF REV__ENST00000536384.2_1_1:31905978-31906919:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2848510742188 2 518.251954 1034.48936 1.0294 0.00053351 0.51589 0.00026736 1.5453 0.00080087 518.2523336131036 48.359 0.34589 43.125 42.973 43.318 -5.2339 39 20 3 0 0 0 0.19613 1 30239 30239 12.532 3.9383 1 26190000 + 18225 28538 12601 12821 21480 21480 -0.02650957024525269 HADDSFLVL 9 Unmodified _HADDSFLVL_ 0 0 0 ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7576599121094 2 508.756007 1015.49746 0.48473 0.00024661 0.37537 0.00019097 0.86011 0.00043758 508.7561255752237 68.703 0.49522 68.703 68.439 68.934 0 60 21 4 0 0 0 0.010877 3 38203 38203;38306;38401 77.984 54.836 1 11622000 18226 7040 12602 12822 21481;21482;21483 21481 -0.00966822827751912 HADGTIVRY 9 Unmodified _HADGTIVRY_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000476264.6_1_2:27703990-27712589:-|nuORF;nc|ENSG00000138002|Q9UG01-3|IFT172;ENST00000511842.5_1_2:27693746-27712529:-|nuORF ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MSMS AL20221201_MKP_PDAC_01 4 516.267578125 2 516.267073 1030.51959 NaN NaN NaN NaN NaN NaN NaN 27.408 1 24.371 23.871 24.871 -3.0365 0 0 0 1.6807E-06 1 15187 15187 145.13 52.638 1 18227 5001 12603 12823 21484 21484 0.0055540164069043385 HADLLIVVF 9 Unmodified _HADLLIVVF_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8026733398438 2 513.80276 1025.59097 0.34351 0.0001765 -0.21037 -0.00010809 0.13315 6.8412E-05 513.802849108661 92.47 0.4422 91.99 91.791 92.233 -0.48093 42 20 3 0 0 0 0.16226 2 50503 50503;50599 26.884 19.594 1 928530 18228 7676 12604 12824 21485;21486 21485 0.0791952134532039 HADLLIVVF 9 Unmodified _HADLLIVVF_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8029174804688 2 513.80276 1025.59097 1.4223 0.0007308 -0.69016 -0.00035461 0.73217 0.00037619 513.8024164677117 91.755 0.54897 91.791 91.642 92.191 0.036499 30 19 2 0 0 0 0.016184 1 51052 51052 67.344 42.67 1 6100700 18229 7676 12604 12824 21487 21487 0.0791952134532039 HADLLIVVF 9 Unmodified _HADLLIVVF_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS AL20221201_MKP_PDAC_01 4 513.8035278320312 2 513.80276 1025.59097 NaN NaN NaN NaN NaN NaN NaN 100.34 1 94.161 93.661 94.661 -6.1757 0 0 0 0.6557 1 67067 67067 10.824 2.9138 1 18230 7676 12604 12824 21488 21488 0.0791952134532039 HADLYTTCL 9 Unmodified _HADLYTTCL_ 0 0 0 ENST00000409262.7_1_2:74331974-74332148:+|nuORF ENST00000409262.7_1_2:74331974-74332148:+|nuORF ENST00000409262.7_1_2:74331974-74332148:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7420654296875 2 518.742042 1035.46953 0.45731 0.00023722 0.019907 1.0327E-05 0.47721 0.00024755 518.7421381260145 68.245 0.39346 67.764 67.616 68.01 -0.48071 45 17 4 0 0 0 0.39863 1 37284 37284 12.532 1.7076 1 8211700 18231 12958 12605 12825 21489 21489 -0.04678469079522074 HADPRIQGY 9 Unmodified _HADPRIQGY_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7642211914062 2 528.764697 1055.51484 -0.047699 -2.5221E-05 -0.10652 -5.6324E-05 -0.15422 -8.1545E-05 528.7643220148383 21.861 0.24456 21.861 21.732 21.976 0 82 37 3 0 0 0 0.10734 2 11138 11035;11138 32.305 18.399 1 5094000 18232 934 12606 12826 21490;21491 21491 -0.010694825020891585 HADPRIQGY 9 Unmodified _HADPRIQGY_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.76123046875 2 528.764697 1055.51484 0.26218 0.00013863 -1.7402 -0.00092015 -1.478 -0.00078152 528.76357942069 24.224 0.34878 21.397 21.213 21.562 -2.8273 39 19 3 0 0 0 0.042911 1 13134 13134 48.346 27.892 1 16885000 18233 934 12606 12826 21492 21492 -0.010694825020891585 HADPRIQGY 9 Unmodified _HADPRIQGY_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1;ENST00000496932.1_1_1:43830832-43833598:-|nuORF;ENST00000479439.5_1_1:43830699-43831981:-|nuORF;ENST00000464204.5_1_1:43830107-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.2090148925781 3 352.845557 1055.51484 0.94629 0.00033389 0.20334 7.1746E-05 1.1496 0.00040564 353.1799754481038 24.228 0.25488 21.4 21.231 21.486 -2.8273 19 13 2 0 0 0 0.16785 1 13137 13137 11.495 1.4208 1 3995700 18234 934 12606 12826 21493 21493 -0.010694825020891585 HADPTELAL 9 Unmodified _HADPTELAL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7482604980469 2 483.748182 965.481811 0.73417 0.00035515 0.20755 0.0001004 0.94172 0.00045556 483.7482275389966 45.985 0.37202 45.985 45.838 46.21 0 49 17 4 0 0 0 0.010877 2 25063 25063;25176 77.984 47.76 1 50401000 18235 4231 12607 12827 21494;21495 21494 -0.002311093448156498 HADPTELAL 9 Unmodified _HADPTELAL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7486572265625 2 483.748182 965.481811 0.46158 0.00022329 -0.57172 -0.00027657 -0.11014 -5.3278E-05 483.7477871679271 51.907 0.37696 46.173 45.986 46.363 -5.7345 40 25 2 0 0 0 0.016184 2 32805 32658;32805 67.344 41.076 1 60561000 18236 4231 12607 12827 21496;21497 21497 -0.002311093448156498 HADSLYTYP 9 Unmodified _HADSLYTYP_ 0 0 0 ENSG00000131808|ENST00000533718|FSHB ENSG00000131808|ENST00000533718|FSHB ENSG00000131808|ENST00000533718|FSHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7461547851562 2 533.745639 1065.47673 0.25331 0.0001352 -1.2601 -0.00067259 -1.0068 -0.00053739 533.7441852699797 37.641 0.3908 37.641 37.475 37.865 0 40 19 3 0 0 0 0.16226 1 20062 20062 26.884 5.137 1 7241800 18237 4353 12608 12828 21498 21498 -0.05339413207434518 HADSNIVIM 9 Oxidation (M) _HADSNIVIM(Oxidation (M))_ HADSNIVIM(1) HADSNIVIM(89) 0 0 1 ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.247802734375 2 508.247492 1014.48043 -0.18887 -9.5991E-05 -1.6788 -0.00085325 -1.8677 -0.00094924 508.2466814138048 29.718 0.16923 29.718 29.608 29.777 0 17 8 3 0 0 0 0.0086722 1 15382 15382 88.954 54.767 1 2277700 18238 2161 12609 12829 21499 21499 374 -0.02623066705200472 HADTSRDDHGY 11 Unmodified _HADTSRDDHGY_ 0 0 0 ENST00000530883.1_2_19:56289199-56290240:+|nuORF ENST00000530883.1_2_19:56289199-56290240:+|nuORF ENST00000530883.1_2_19:56289199-56290240:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 425.1814575195312 3 425.177924 1272.51194 NaN NaN NaN NaN NaN NaN NaN 47.594 1 42.36 41.86 42.86 -5.2339 0 0 0 0.93893 1 29553 29553 1.3296 0.21989 1 18239 14897 12610 12830 21500 21500 -0.11341402417565405 HADVSNQLY 9 Unmodified _HADVSNQLY_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7490844726562 2 523.748713 1045.48287 -0.13271 -6.9509E-05 3.4063 0.0017841 3.2736 0.0017146 523.7491083326498 28.844 0.30127 28.844 28.761 29.063 0 20 14 2 0 0 0 0.047196 1 14920 14920 46.021 26.582 1 1017200 18240 5847 12611 12831 21501 21501 -0.03804894975883144 HAEASAIVEY 10 Unmodified _HAEASAIVEY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2628784179688 2 545.264196 1088.51384 0.49703 0.00027101 -1.7274 -0.00094187 -1.2303 -0.00067086 545.2635049371154 36.232 0.25502 36.232 36.095 36.35 0 25 12 3 0 0 0 0.0020965 1 19171 19171 108 82.598 1 20157000 18241 1302 12612 12832 21502 21502 -0.02687741661657128 HAEASAIVEY 10 Unmodified _HAEASAIVEY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MSMS AL20221201_MKP_PDAC_01 4 545.2648315429688 2 545.264196 1088.51384 NaN NaN NaN NaN NaN NaN NaN 41.187 1 36.579 36.079 37.079 -4.6079 0 0 0 0.024856 1 24695 24695 85.272 59.873 1 18242 1302 12612 12832 21503 21503 -0.02687741661657128 HAEATIVVM 9 Oxidation (M) _HAEATIVVM(Oxidation (M))_ HAEATIVVM(1) HAEATIVVM(67) 0 0 1 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7525939941406 2 493.75241 985.490267 -0.68446 -0.00033795 0.53578 0.00026454 -0.14867 -7.3408E-05 493.75275132145043 30.232 0.3456 30.232 30.057 30.402 0 50 16 4 0 0 0 0.016184 1 15737 15737 67.344 38.857 1 20004000 18243 4442 12613 12833 21504 21504 812 -0.0030587869981673066 HAEATIVVM 9 Oxidation (M) _HAEATIVVM(Oxidation (M))_ HAEATIVVM(1) HAEATIVVM(82) 0 0 1 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7506103515625 2 493.75241 985.490267 0.86486 0.00042703 -1.8974 -0.00093684 -1.0325 -0.00050982 493.7512656222141 34.323 0.43266 30.299 30.112 30.544 -4.0234 39 24 2 0 0 0 0.0094915 1 19788 19788 81.864 54.98 1 26429000 18244 4442 12613 12833 21505 21505 812 -0.0030587869981673066 HAEATIVVM 9 Unmodified _HAEATIVVM_ 0 0 0 ENST00000487325.5_1_1:156038076-156039544:+|nuORF;ENSG00000132698|ENST00000361084|RAB25 ENST00000487325.5_1_1:156038076-156039544:+|nuORF ENST00000487325.5_1_1:156038076-156039544:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 485.7550354003906 2 485.754953 969.495352 NaN NaN NaN NaN NaN NaN NaN 51.198 1 45.549 45.049 46.049 -5.649 0 0 0 0.029091 1 32198 32198 67.344 35.038 1 18245 4442 12613 12834 21506 21506 0.00938425162803469 HAEDPLSITF 10 Unmodified _HAEDPLSITF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000531466.1_1_6:128326139-128326361:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2809448242188 2 565.279846 1128.54514 0.44799 0.00025324 -0.60333 -0.00034105 -0.15534 -8.7811E-05 565.2807630111201 68.094 0.25081 68.094 67.953 68.204 0 28 12 3 0 0 0 0.27276 1 37980 37980 29.082 14.676 1 534590 18246 6218;14777;14900 12614 12835 21507 21507 -0.013991686275630855 HAELIASTF 9 Unmodified _HAELIASTF_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7584838867188 2 494.758549 987.502546 0.32738 0.00016197 0.0081336 4.0242E-06 0.33551 0.000166 494.75851519039054 50.661 0.22819 50.661 50.495 50.724 0 19 10 2 0 0 0 0.026094 1 27900 27900 57.471 13.064 1 6064900 18247 15906;14132 12615 12836 21508 21508 0.008294810348502324 HAELIASTF 9 Unmodified _HAELIASTF_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7594299316406 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 50.786 1 50.786 50.286 51.286 0 0 0 0 0.6306 1 28012 28012 11.64 3.047 1 18248 15906;14132 12615 12836 21509 21509 0.008294810348502324 HAELIASTF 9 Unmodified _HAELIASTF_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7597961425781 2 494.758549 987.502546 0.37149 0.0001838 -0.11581 -5.73E-05 0.25567 0.0001265 494.7586215684954 51.064 0.27991 50.651 50.518 50.798 -0.41351 32 13 3 0 0 0 0.019303 1 27496 27496 64.236 36.608 1 4499000 18249 15906;14132 12615 12836 21510 21510 0.008294810348502324 HAELYERYTYR 11 Unmodified _HAELYERYTYR_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.9136962890625 3 500.912519 1499.71573 NaN NaN NaN NaN NaN NaN NaN 18.319 1 18.342 17.842 18.842 0.023106 0 0 0 0.94287 1 9177 9177 0.45452 0.29519 1 + 18250 21641 12616 12837 21511 21511 -0.014142579761028173 HAEPLAAVL 9 Unmodified _HAEPLAAVL_ 0 0 0 ENSG00000178385|ENST00000427836|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 ENSG00000178385|ENST00000427836|PLEKHM3 ENSG00000178385|ENST00000427836|PLEKHM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7629699707031 2 460.763635 919.512717 NaN NaN NaN NaN NaN NaN NaN 55.94 1 55.94 55.44 56.44 0 0 0 0 0.080768 1 31094 31094 48.346 14.243 1 18251 8749 12617 12838 21512 21512 0.04974088760093309 HAFEIIHLL 9 Unmodified _HAFEIIHLL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENST00000599232.1_1_19:58904459-58904744:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3151245117188 2 546.813659 1091.61277 0.57704 0.00031553 -0.10776 -5.8923E-05 0.46928 0.00025661 546.8139935173534 74.375 0.517 73.899 73.69 74.207 -0.47588 45 21 3 0 0 0 0.023481 1 40660 40660 77.984 17.595 1 7791500 18252 1377 12618 12839 21513 21513 0.07062326093910087 HAFEIIHLL 9 Unmodified _HAFEIIHLL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENST00000599232.1_1_19:58904459-58904744:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8142700195312 2 546.813659 1091.61277 0.31498 0.00017224 -0.75807 -0.00041453 -0.44309 -0.00024229 546.8134219937832 73.85 0.57903 73.894 73.654 74.233 0.043983 53 26 3 0 0 0 0.0094097 2 40622 40622;40728 104.8 53.944 1 25624000 18253 1377 12618 12839 21514;21515 21514 0.07062326093910087 HAFEIIHLL 9 Unmodified _HAFEIIHLL_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF;ENST00000599232.1_1_19:58904459-58904744:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.81396484375 2 546.813659 1091.61277 0.68159 0.0003727 -1.9275 -0.001054 -1.2459 -0.00068128 546.8131347766961 98.58 0.12723 92.404 92.338 92.465 -6.1757 12 9 2 0 0 0 0.010611 1 65425 65425 77.984 31.063 1 20719000 18254 1377 12618 12839 21516 21516 0.07062326093910087 HAFESNNFIY 10 Unmodified _HAFESNNFIY_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2822265625 2 621.28292 1240.55129 0.2719 0.00016893 -0.55121 -0.00034246 -0.27931 -0.00017353 621.2822174949396 51.901 0.18874 51.468 51.381 51.569 -0.43367 21 9 3 0 0 0 0.01132 1 28025 28025 85.272 68.159 1 3400800 18255 2385 12619 12840 21517 21517 -0.05936650396051846 HAFESNNFIY 10 Unmodified _HAFESNNFIY_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MSMS AL20221201_MKP_PDAC_01 4 621.2833251953125 2 621.28292 1240.55129 NaN NaN NaN NaN NaN NaN NaN 57.727 1 51.699 51.199 52.199 -6.0275 0 0 0 0.00072657 1 36937 36937 111.29 80.651 1 18256 2385 12619 12840 21518 21518 -0.05936650396051846 HAFESNNFIYF 11 Unmodified _HAFESNNFIYF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.3190307617188 2 694.817127 1387.6197 0.62285 0.00043277 -1.1257 -0.00078217 -0.50288 -0.00034941 695.317591342394 73.704 0.20747 73.229 73.092 73.299 -0.47588 15 8 2 0 0 0 0.46197 1 40314 40314 22.658 16.926 1 1730700 18257 2385 12620 12841 21519 21519 -0.05860405816201819 HAFESNNFIYF 11 Unmodified _HAFESNNFIYF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 694.816162109375 2 694.817127 1387.6197 0.28853 0.00020048 -0.77367 -0.00053756 -0.48513 -0.00033708 694.8166209962133 73.101 0.26048 73.143 73.009 73.27 0.041725 24 12 3 0 0 0 0.0111 1 40275 40275 82.529 73.146 1 6571700 18258 2385 12620 12841 21520 21520 -0.05860405816201819 HAFESNNFIYF 11 Unmodified _HAFESNNFIYF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.817626953125 2 694.817127 1387.6197 0.61589 0.00042793 -0.66276 -0.0004605 -0.046874 -3.2569E-05 694.816556228255 92.091 0.44899 85.915 85.666 86.115 -6.1757 47 26 2 0 0 0 0.0030527 2 60817 60817;60973 96.367 72.346 1 17833000 18259 2385 12620 12841 21521;21522 21521 -0.05860405816201819 HAFESSQKY 9 Unmodified _HAFESSQKY_ 0 0 0 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENST00000477675.1_1_22:22055420-22058252:-|nuORF ENSG00000175155|ENST00000312655|YPEL2 ENSG00000175155|ENST00000312655|YPEL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7566528320312 2 548.756538 1095.49852 -0.31644 -0.00017365 2.1762 0.0011942 1.8597 0.0010205 548.7579351465116 17.45 0.19131 17.45 17.316 17.507 0 55 34 2 0 0 0 0.43463 1 8539 8539 10.824 8.5212 1 1081100 18260 1740 12621 12842 21523 21523 -0.04540608458864881 HAFESSQKY 9 Unmodified _HAFESSQKY_ 0 0 0 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENST00000477675.1_1_22:22055420-22058252:-|nuORF ENSG00000175155|ENST00000312655|YPEL2 ENSG00000175155|ENST00000312655|YPEL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2582397460938 2 548.756538 1095.49852 0.65136 0.00035744 -0.045025 -2.4708E-05 0.60633 0.00033273 548.7564800369136 18.454 0.23233 15.832 15.69 15.923 -2.6215 37 22 2 0 0 0 0.020973 1 9668 9668 62.573 47.734 1 2602700 18261 1740 12621 12842 21524 21524 -0.04540608458864881 HAFGGNKASY 10 Unmodified _HAFGGNKASY_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2515258789062 2 526.251423 1050.48829 -0.19916 -0.00010481 0.45242 0.00023809 0.25326 0.00013328 526.2515257459478 17.291 0.18396 17.291 17.209 17.393 0 86 40 3 0 0 0 0.20962 1 8501 8501 32.786 7.3864 1 1192800 18262 960 12622 12843 21525 21525 -0.03493171393438388 HAFGGNKASY 10 Unmodified _HAFGGNKASY_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1700134277344 3 351.170041 1050.48829 NaN NaN NaN NaN NaN NaN NaN 17.328 1 17.328 16.828 17.828 0 0 0 0 0.96627 1 8528 8528 2.086 0.24177 1 18263 960 12622 12843 21526 21526 -0.03493171393438388 HAFGGNKASY 10 Unmodified _HAFGGNKASY_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.250732421875 2 526.251423 1050.48829 -0.64902 -0.00034155 0.95059 0.00050025 0.30157 0.0001587 526.2515874405618 17.565 0.068798 17.579 17.527 17.596 0.013865 18 13 2 0 0 0 0.69064 1 8739 8739 3.9444 1.0552 1 522870 18264 960 12622 12843 21527 21527 -0.03493171393438388 HAFGGNKASY 10 Unmodified _HAFGGNKASY_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2512817382812 2 526.251423 1050.48829 0.7349 0.00038674 -0.76766 -0.00040398 -0.032764 -1.7242E-05 526.250825889718 18.366 0.33461 15.745 15.572 15.906 -2.6215 57 29 3 0 0 0 0.00013919 1 9655 9655 118.07 72.047 1 7272500 18265 960 12622 12843 21528 21528 -0.03493171393438388 HAFGGNKASY 10 Unmodified _HAFGGNKASY_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.8776245117188 3 351.170041 1050.48829 1.4011 0.00049203 0.89773 0.00031525 2.2988 0.00080729 351.1703626493445 18.379 0.24667 15.757 15.638 15.885 -2.6215 33 21 2 0 0 0 0.21734 1 9656 9656 14.405 10.809 1 2726200 18266 960 12622 12843 21529 21529 -0.03493171393438388 HAFILVYSIT 10 Unmodified _HAFILVYSIT_ 0 0 0 ENSG00000165023|ENST00000375765|DIRAS2 ENSG00000165023|ENST00000375765|DIRAS2 ENSG00000165023|ENST00000375765|DIRAS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3264770507812 2 582.326599 1162.63865 NaN NaN NaN NaN NaN NaN NaN 29.631 1 29.661 29.161 30.161 0.030106 0 0 0 0.99091 1 15473 15473 1.6526 0 1 18267 7279 12623 12844 21530 21530 0.06383175545511222 HAFLKERLAR 10 Unmodified _HAFLKERLAR_ 0 0 0 REV__nc|ENSG00000156194|O14830-2|PPEF2 REV__nc|ENSG00000156194|O14830-2|PPEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2478942871094 3 414.247285 1239.72002 0.16867 6.9871E-05 -1.6681 -0.00069102 -1.4995 -0.00062115 414.24702593431584 48.533 0.37336 48.49 48.341 48.714 -0.04369 55 18 4 0 0 0 0.66652 1 26163 26163 6.6304 0.84694 1 15905000 + 18268 21318 12624 12845 21531 21531 0.10975296028118464 HAFVDLHEF 9 Unmodified _HAFVDLHEF_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7697143554688 2 557.769448 1113.52434 0.71135 0.00039677 1.0599 0.00059115 1.7712 0.00098792 557.7690210636466 53.593 0.45646 53.593 53.42 53.876 0 61 21 5 0 0 0 0.00856 2 29683 29683;29791 100.37 81.115 1 128720000 18269 2323 12625 12846 21532;21533 21532 -0.027877142165834812 HAFVDLHEF 9 Unmodified _HAFVDLHEF_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.76904296875 2 557.769448 1113.52434 0.45868 0.00025584 -0.084563 -4.7167E-05 0.37411 0.00020867 557.7692690062815 54.116 0.35387 53.649 53.487 53.841 -0.46664 67 17 5 0 0 0 0.0018186 2 29260 29260;29364 133.7 108.71 1 154160000 18270 2323 12625 12846 21534;21535 21534 -0.027877142165834812 HAFVDLHEF 9 Unmodified _HAFVDLHEF_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.76904296875 2 557.769448 1113.52434 1.0132 0.00056515 0.35093 0.00019574 1.3642 0.00076088 557.7694532591433 59.632 0.78214 53.517 53.318 54.1 -6.1147 83 42 3 0 0 0 0.0067112 2 38238 38238;38362 112.59 90.847 1 372370000 18271 2323 12625 12846 21536;21537 21536 -0.027877142165834812 HAFVDLHEF 9 Unmodified _HAFVDLHEF_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.76904296875 2 557.769448 1113.52434 1.1557 0.0006446 -1.023 -0.00057059 0.1327 7.4015E-05 557.7686744805178 71.896 2.2151 65.721 65.066 67.282 -6.1757 145 114 2 0 0 0 1.0251E-06 7 47204 46794;46917;47059;47204;47319;47440;47631 162.95 133.11 1 46234000 18272 2323 12625 12846 21538;21539;21540;21541;21542;21543;21544 21541 -0.027877142165834812 HAFVDLHEF 9 Unmodified _HAFVDLHEF_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;ENST00000467412.1_1_19:48976489-48976636:+|nuORF nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MSMS AL20221201_MKP_PDAC_01 4 557.7693481445312 2 557.769448 1113.52434 NaN NaN NaN NaN NaN NaN NaN 73.647 1 67.471 66.971 67.971 -6.1757 0 0 0 0.012652 1 48159 48159 108 88.74 1 18273 2323 12625 12846 21545 21545 -0.027877142165834812 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7777099609375 2 564.777274 1127.53999 0.70623 0.00039886 0.68785 0.00038848 1.3941 0.00078734 564.7772345983866 49.683 0.39499 49.683 49.51 49.905 0 32 17 2 0 0 0 0.00856 2 27304 27304;27417 100.37 81.115 1 62968000 18274 2595 12626 12847 21546;21547 21546 -0.01867427699539803 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.85400390625 3 376.853941 1127.53999 0.47223 0.00017796 -0.48958 -0.0001845 -0.017348 -6.5377E-06 376.85368705164785 49.678 0.17452 49.678 49.56 49.735 0 13 7 2 0 0 0 0.28047 1 27369 27369 17.113 4.8722 1 1751500 18275 2595 12626 12847 21548 21548 -0.01867427699539803 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7774047851562 2 564.777274 1127.53999 0.99782 0.00056354 0.23622 0.00013341 1.234 0.00069696 564.7772125578981 50.092 0.38046 49.7 49.51 49.891 -0.3923 55 18 5 0 0 0 0.0031966 2 26909 26909;27010 125.62 94.988 1 91877000 18276 2595 12626 12847 21549;21550 21549 -0.01867427699539803 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7782592773438 2 564.777274 1127.53999 1.3414 0.00075762 0.26571 0.00015007 1.6072 0.00090769 564.7774697911805 49.742 0.21596 49.693 49.589 49.805 -0.048824 19 10 2 0 0 0 0.0018186 1 26893 26893 133.7 97.575 1 3787200 18277 2595 12626 12847 21551 21551 -0.01867427699539803 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7784423828125 2 564.777274 1127.53999 1.3193 0.00074511 0.59509 0.00033609 1.9144 0.0010812 564.77745443371 55.375 0.52947 49.454 49.223 49.753 -5.9211 89 32 4 0 0 0 0.012148 3 35187 35072;35187;35317 74.423 55.166 1 180870000 18278 2595 12626 12847 21552;21553;21554 21553 -0.01867427699539803 HAFVELHEF 9 Unmodified _HAFVELHEF_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8540344238281 3 376.853941 1127.53999 1.6538 0.00062323 -0.64607 -0.00024347 1.0077 0.00037976 376.85370033612617 55.389 0.35296 49.468 49.285 49.638 -5.9211 33 21 2 0 0 0 0.023164 1 35251 35251 45.7 24.163 1 20526000 18279 2595 12626 12847 21555 21555 -0.01867427699539803 HAFVTEVAY 9 Unmodified _HAFVTEVAY_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.760498046875 2 518.758549 1035.50255 0.065535 3.3997E-05 -0.85154 -0.00044174 -0.786 -0.00040775 518.7594715461835 45.28 0.24837 45.28 45.114 45.363 0 16 12 2 0 0 0 0.027803 1 24651 24651 56.541 33.393 1 20841000 18280 3266 12627 12848 21556 21556 -0.013785189651571272 HAFVTEVAY 9 Unmodified _HAFVTEVAY_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2611083984375 2 518.758549 1035.50255 -0.050554 -2.6225E-05 -0.26775 -0.0001389 -0.31831 -0.00016512 519.2597983517735 45.549 0.16499 45.225 45.122 45.287 -0.32425 11 8 2 0 0 0 0.037958 1 24369 24369 56.541 41.703 1 7790800 18281 3266 12627 12848 21557 21557 -0.013785189651571272 HAFWIWCCMLF 11 Unmodified _HAFWIWCCMLF_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|0|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|60 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|0|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|60 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 728.8217163085938 2 728.821789 1455.62903 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.45 102.95 103.95 0 0 0 0 0.94301 1 57027 57027 0.35063 0 1 + 18282 16799 12628 12849 21558 21558 -0.08056375327555543 HAGANVKP 8 Unmodified _HAGANVKP_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.2198791503906 2 397.219395 792.424236 0.08575 3.4062E-05 -0.47171 -0.00018737 -0.38596 -0.00015331 397.21934825092904 39.497 0.23281 39.497 39.362 39.595 0 15 10 2 0 0 0 0.72953 1 21169 21169 14.582 0 1 3043100 18283 2207 12629 12850 21559 21559 0.019720932402719882 HAGEAIPAL 9 Unmodified _HAGEAIPAL_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.7403564453125 2 439.74016 877.465767 0.010971 4.8242E-06 0.069698 3.0649E-05 0.080669 3.5473E-05 439.74014059503565 44.334 0.40086 44.334 44.111 44.512 0 35 20 2 0 0 0 0.012158 2 24068 24068;24174 74.396 29.989 1 27509000 18284 9827 12630 12851 21560;21561 21560 0.02213229208928169 HAGEAIPAL 9 Unmodified _HAGEAIPAL_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7399597167969 2 439.74016 877.465767 0.97956 0.00043075 -0.43807 -0.00019264 0.54149 0.00023812 439.73990414288613 49.262 0.39504 43.866 43.704 44.099 -5.3961 38 25 2 0 0 0 0.0081063 2 30860 30731;30860 93.883 40.308 1 47638000 18285 9827 12630 12851 21562;21563 21563 0.02213229208928169 HAGEDVAVF 9 Unmodified _HAGEDVAVF_ 0 0 0 ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP ENSG00000163286|ENST00000295453|ALPG ENSG00000163286|ENST00000295453|ALPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7311706542969 2 472.727249 943.439946 -0.25071 -0.00011852 0.8868 0.00041922 0.63609 0.0003007 472.7280237627789 41.504 0.42979 41.504 41.196 41.626 0 29 21 2 0 0 0 0.038285 1 22327 22327 50.855 8.7605 1 11150000 18286 6971 12631 12852 21564 21564 -0.03403665033329162 HAGEIAEQL 9 Unmodified _HAGEIAEQL_ 0 0 0 REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2476196289062 2 484.245806 966.47706 0.95083 0.00046044 0.51141 0.00024765 1.4622 0.00070808 484.24638320451123 31.016 0.27691 27.519 27.366 27.643 -3.497 15 12 2 0 0 0 0.026094 1 17539 17539 57.471 7.5383 1 34110000 + 18287 26838 12632 12853 21565 21565 -0.007519934875631407 HAGEIAEQL 9 Unmodified _HAGEIAEQL_ 0 0 0 REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF REV__ENST00000420757.1_1_1:240799967-240800270:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 484.245806 966.47706 0.95083 0.00046044 0.51141 0.00024765 1.4622 0.00070808 484.24638320451123 31.016 0.27691 27.519 27.366 27.643 -3.497 0.10435 0.00058638 NaN 57.471 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 34110000 + 18288 26838 12632 12853 -0.007519934875631407 HAGFAANC 8 Unmodified _HAGFAANC_ 0 0 0 REV__nc|ENSG00000103549|O75150-4|RNF40 REV__nc|ENSG00000103549|O75150-4|RNF40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.6680297851562 2 395.66868 789.322807 0.48009 0.00018996 -2.0861 -0.00082539 -1.606 -0.00063543 395.66762608508844 71.034 0.31616 70.557 70.389 70.705 -0.47736 30 13 3 0 0 0 0.81107 1 38855 38855 0 0 1 1368200 + 18289 18316 12633 12854 21566 21566 -0.08028101453942327 HAGFSFGP 8 Unmodified _HAGFSFGP_ 0 0 0 REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.1926574707031 2 410.192845 818.371138 0.052795 2.1656E-05 -0.15842 -6.4984E-05 -0.10563 -4.3328E-05 410.1927181946212 39.555 0.28043 39.555 39.381 39.661 0 21 12 2 0 0 0 0.72953 1 21193 21193 14.582 2.0501 1 3680600 + 18290 26240 12634 12855 21567 21567 -0.04531284542372305 HAGFSFGP 8 Unmodified _HAGFSFGP_ 0 0 0 REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.1953430175781 2 410.192845 818.371138 0.71491 0.00029325 -0.32256 -0.00013231 0.39235 0.00016094 410.19275822638974 44.312 0.35001 39.46 39.264 39.614 -4.852 44 25 2 0 0 0 0.5953 1 26961 26961 26.341 15.227 1 21572000 + 18291 26240 12634 12855 21568 21568 -0.04531284542372305 HAGFSFGP 8 Unmodified _HAGFSFGP_ 0 0 0 REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 410.192845 818.371138 0.052795 2.1656E-05 -0.15842 -6.4984E-05 -0.10563 -4.3328E-05 410.1927181946212 39.555 0.28043 39.555 39.381 39.661 0 0.012889 -4.8145E-05 NaN 26.341 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3680600 + 18292 26240 12634 12855 -0.04531284542372305 HAGFSFGP 8 Unmodified _HAGFSFGP_ 0 0 0 REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 410.192845 818.371138 0.12654 5.1906E-05 0.70358 0.0002886 0.83012 0.00034051 410.1933098916284 39.909 0.24265 39.611 39.471 39.713 -0.29716 0.069409 0.00065903 NaN 26.341 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2058300 + 18293 26240 12634 12855 -0.04531284542372305 HAGFSFGP 8 Unmodified _HAGFSFGP_ 0 0 0 REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF REV__ENST00000377113.5_1_10:21784176-21784338:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 410.192845 818.371138 0.71491 0.00029325 -0.32256 -0.00013231 0.39235 0.00016094 410.19275822638974 44.312 0.35001 39.46 39.264 39.614 -4.852 -0.082297 -0.0001828 NaN 26.341 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 21572000 + 18294 26240 12634 12855 -0.04531284542372305 HAGGIFNRY 9 Unmodified _HAGGIFNRY_ 0 0 0 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7630615234375 2 517.761958 1033.50936 0.31206 0.00016158 0.75973 0.00039336 1.0718 0.00055494 517.7627425944881 30.927 0.19596 30.824 30.743 30.939 -0.10269 12 7 2 0 0 0 0.28047 1 16100 16100 18.135 6.4947 1 1647700 18295 2522 12635 12856 21569 21569 -0.006051612939018014 HAGGIFNRY 9 Unmodified _HAGGIFNRY_ 0 0 0 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.761958 1033.50936 -0.059031 -3.0564E-05 -0.29428 -0.00015237 -0.35331 -0.00018293 517.7620071749129 30.728 0.14014 30.758 30.69 30.83 0.030104 -0.033169 -0.00078021 NaN 18.135 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 587330 18296 2522 12635 12856 -0.006051612939018014 HAGIVWWSWW 10 Unmodified _HAGIVWWSWW_ 0 0 0 REV__ENST00000333055.8_1_5:180218084-180218396:-|nuORF REV__ENST00000333055.8_1_5:180218084-180218396:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.3212890625 2 664.322183 1326.62981 -0.025176 -1.6725E-05 1.0208 0.00067813 0.9956 0.0006614 664.3225480866247 85.406 0.2589 85.406 85.2 85.459 0 12 10 2 0 0 0 0.72196 1 47337 47337 0.45834 0.057624 1 212410 + 18297 25619 12636 12857 21570 21570 -0.020437533003132557 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2317504882812 2 476.232168 950.449782 0.0043532 2.0731E-06 -0.082416 -3.9249E-05 -0.078063 -3.7176E-05 476.2320519247397 40.421 0.39238 40.421 40.192 40.584 0 68 19 5 0 0 0 0.359 2 21650 21650;21760 48.848 28.809 1 199210000 18298 5791 12637 12858 21571;21572 21571 -0.027424770279594668 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.457763671875 1 951.457059 950.449782 -0.5395 -0.00051331 -0.16219 -0.00015432 -0.70169 -0.00066763 951.4568979184423 40.416 0.25297 40.416 40.257 40.51 0 22 12 2 0 0 0 0.24182 1 21689 21689 63.394 37.052 1 7697100 18299 5791 12637 12858 21573 21573 -0.027424770279594668 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.232177734375 2 476.232168 950.449782 0.60637 0.00028877 -0.049541 -2.3593E-05 0.55683 0.00026518 476.2320928418536 40.876 0.42333 40.573 40.254 40.678 -0.30304 50 20 3 0 0 0 0.45625 1 21522 21522 38.992 25.484 1 10964000 18300 5791 12637 12858 21574 21574 -0.027424770279594668 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2674865722656 2 476.232168 950.449782 0.40592 0.00019331 0.048446 2.3071E-05 0.45437 0.00021639 476.2321192153992 40.455 0.31775 40.46 40.276 40.593 0.0050545 20 14 2 0 0 0 8.7369 1 21563 21563 11.114 8.537 1 2244700 18301 5791 12637 12858 21575 21575 -0.027424770279594668 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4562377929688 1 951.457059 950.449782 0.23685 0.00022535 -0.17246 -0.00016409 0.064387 6.1262E-05 951.4573001015988 45.477 0.36531 40.523 40.348 40.713 -4.9549 61 24 3 0 0 0 0.11211 3 27957 27815;27848;27957 96.119 56.648 1 28753000 18302 5791 12637 12858 21576;21577;21578 21578 -0.027424770279594668 HAGLVYEY 8 Unmodified _HAGLVYEY_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2325744628906 2 476.232168 950.449782 0.56781 0.00027041 0.13681 6.5153E-05 0.70462 0.00033556 476.232268471477 45.456 0.6843 40.501 40.299 40.983 -4.9549 125 46 3 0 0 0 0.21538 2 27993 27850;27993 67.413 35.296 1 286600000 18303 5791 12637 12858 21579;21580 21580 -0.027424770279594668 HAGPAIPSV 9 Unmodified _HAGPAIPSV_ 0 0 0 nc|ENSG00000075413|P27448-8|MARK3;nc|ENSG00000075413|P27448-6|MARK3;nc|ENSG00000075413|P27448-3|MARK3;nc|ENSG00000075413|P27448-4|MARK3;nc|ENSG00000075413|P27448-2|MARK3;ENSG00000075413|ENST00000429436|MARK3;nc|ENSG00000075413|P27448-7|MARK3 nc|ENSG00000075413|P27448-8|MARK3 nc|ENSG00000075413|P27448-8|MARK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7345886230469 2 424.734877 847.455202 0.11374 4.831E-05 0.45218 0.00019206 0.56592 0.00024037 424.73538185785225 39.598 0.27066 39.598 39.469 39.74 0 15 12 2 0 0 0 0.068777 1 21247 21247 40.449 19.577 1 1915500 18304 1155 12638 12859 21581 21581 0.02537246554527428 HAGPIVSVW 9 Unmodified _HAGPIVSVW_ 0 0 0 ENSG00000101413|ENST00000373433|RPRD1B ENSG00000101413|ENST00000373433|RPRD1B ENSG00000101413|ENST00000373433|RPRD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2642822265625 2 483.263802 964.513051 0.40128 0.00019392 -0.29403 -0.00014209 0.10725 5.183E-05 483.26321529887605 58.146 0.2231 57.657 57.556 57.779 -0.48974 17 10 2 0 0 0 0.023761 1 31608 31608 59.795 31.308 1 1775600 18305 1962 12639 12860 21582 21582 0.029375084799426077 HAGPIVSVW 9 Unmodified _HAGPIVSVW_ 0 0 0 ENSG00000101413|ENST00000373433|RPRD1B ENSG00000101413|ENST00000373433|RPRD1B ENSG00000101413|ENST00000373433|RPRD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2647399902344 2 483.263802 964.513051 0.91208 0.00044077 -0.69478 -0.00033576 0.2173 0.00010501 483.2630657557466 57.717 0.22163 57.651 57.593 57.815 -0.066036 18 10 2 0 0 0 0.16776 1 31461 31461 26.341 13.81 1 1025400 18306 1962 12639 12860 21583 21583 0.029375084799426077 HAGPPYEDIAF 11 Unmodified _HAGPPYEDIAF_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.785400390625 2 608.785296 1215.55604 0.11693 7.1186E-05 0.13321 8.1094E-05 0.25014 0.00015228 608.7851914883288 58.431 0.77995 58.431 57.968 58.748 0 80 31 3 0 0 0 0.043669 3 32508 32408;32508;32619 52.268 41.444 1 6081800 18307 2301 12640 12861 21584;21585;21586 21585 -0.04311766253294991 HAGPPYEDIAF 11 Unmodified _HAGPPYEDIAF_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7857055664062 2 608.785296 1215.55604 1.127 0.00068611 -0.43592 -0.00026538 0.69109 0.00042072 608.7849126639716 64.523 0.76009 58.347 57.955 58.715 -6.1757 72 41 2 0 0 0 0.0074511 3 41807 41670;41807;41945 71.134 71.134 1 25506000 18308 2301 12640 12861 21587;21588;21589 21588 -0.04311766253294991 HAGPPYEDIAF 11 Unmodified _HAGPPYEDIAF_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 608.785296 1215.55604 0.31151 0.00018964 -0.091403 -5.5645E-05 0.2201 0.000134 608.7850555604687 58.95 0.51411 58.459 58.193 58.707 -0.49079 0.046668 8.0058E-05 NaN 71.134 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 1641600 18309 2301 12640 12861 -0.04311766253294991 HAGPTAHEL 9 Unmodified _HAGPTAHEL_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7311096191406 2 466.732866 931.451179 NaN NaN NaN NaN NaN NaN NaN 16.969 1 16.969 16.469 17.469 0 0 0 0 0.18753 1 8324 8324 32.305 14.159 1 18310 4767 12641 12862 21590 21590 -0.017288429391896898 HAGPTAHEL 9 Unmodified _HAGPTAHEL_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.1982116699219 2 466.732866 931.451179 -0.14353 -6.6991E-05 -0.55669 -0.00025983 -0.70023 -0.00032682 466.7326282443528 17.051 0.15276 17.051 16.982 17.135 0 66 37 2 0 0 0 0.20139 1 8405 8405 10.824 0.75 1 1700100 18311 4767 12641 12862 21591 21591 -0.017288429391896898 HAGPTAHEL 9 Unmodified _HAGPTAHEL_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7325744628906 2 466.732866 931.451179 0.53586 0.0002501 0.44282 0.00020668 0.97868 0.00045678 466.7330754627634 17.975 0.24743 15.388 15.26 15.507 -2.5866 37 16 3 0 0 0 0.022193 2 9393 9393;9501 61.357 37.337 1 8609400 18312 4767 12641 12862 21592;21593 21592 -0.017288429391896898 HAGPVINTL 9 Unmodified _HAGPVINTL_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2616577148438 2 461.261259 920.507966 0.45097 0.00020801 -0.27905 -0.00012871 0.17192 7.9298E-05 461.26109565824754 40.183 0.3222 40.183 40.03 40.352 0 46 15 4 0 0 0 0.012158 2 21539 21539;21646 74.396 27.519 1 34928000 18313 306 12642 12863 21594;21595 21594 0.044532046173458184 HAGPVINTL 9 Unmodified _HAGPVINTL_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2616882324219 2 461.261259 920.507966 0.39782 0.0001835 0.47951 0.00022118 0.87733 0.00040468 461.2613678751906 40.42 0.2766 40.123 39.963 40.24 -0.29716 31 12 3 0 0 0 0.040472 1 21338 21338 49.669 15.566 1 7108600 18314 306 12642 12863 21596 21596 0.044532046173458184 HAGPVINTL 9 Unmodified _HAGPVINTL_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2616271972656 2 461.261259 920.507966 0.45806 0.00021128 0.4516 0.0002083 0.90965 0.00041959 461.26144971742764 45.142 0.50662 40.29 40.007 40.513 -4.852 78 33 3 0 0 0 0.012158 2 27671 27534;27671 74.396 23.541 1 92916000 18315 306 12642 12863 21597;21598 21598 0.044532046173458184 HAGPVPVQV 9 Unmodified _HAGPVPVQV_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 452.7301940917969 2 452.255977 902.497401 0.57815 0.00026147 -0.12106 -5.4749E-05 0.45709 0.00020672 452.25632855525356 45.1 0.33528 40.248 40.021 40.357 -4.852 23 21 2 0 0 0 0.18941 1 27554 27554 14.582 1.0738 1 13599000 18316 8325 12643 12864 21599 21599 0.04225221962906289 HAGRLHLLY 9 Unmodified _HAGRLHLLY_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5419311523438 3 360.541809 1078.6036 0.065063 2.3458E-05 -0.39142 -0.00014112 -0.32636 -0.00011767 360.5416921232697 34.024 0.25779 34.053 33.907 34.165 0.028934 27 11 3 0 0 0 0.14602 1 17920 17920 26.268 16.194 1 3891600 18317 10361 12644 12865 21600 21600 0.06743977528253708 HAGRLHLLY 9 Unmodified _HAGRLHLLY_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5429992675781 3 360.541809 1078.6036 1.6901 0.00060936 -0.48689 -0.00017554 1.2032 0.00043381 360.5417729186234 88.87 0.30199 82.695 82.494 82.796 -6.1757 23 16 2 0 0 0 0.30562 1 58595 58595 16.149 1.3108 1 6952500 18318 10361 12644 12865 21601 21601 0.06743977528253708 HAGSLLLKM 9 Oxidation (M) _HAGSLLLKM(Oxidation (M))_ HAGSLLLKM(1) HAGSLLLKM(75) 0 0 1 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2779541015625 2 493.278595 984.542637 0.78814 0.00038877 -0.61864 -0.00030516 0.1695 8.361E-05 493.2781431034563 28.935 0.24514 28.872 28.721 28.966 -0.062159 16 10 2 0 0 0 0.011968 1 14928 14928 74.929 44.292 1 2975300 18319 6246;6244;9359;9876 12645 12866 21602 21602 1110 0.049747044337891566 HAGSLLLKM 9 Oxidation (M) _HAGSLLLKM(Oxidation (M))_ HAGSLLLKM(1) HAGSLLLKM(82) 0 0 1 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2783813476562 2 493.278595 984.542637 0.35732 0.00017626 -0.93581 -0.00046161 -0.57848 -0.00028535 493.2779725739139 28.735 0.2956 28.764 28.621 28.917 0.029564 18 11 2 0 0 0 0.009483 1 14963 14963 81.89 45.763 1 4007200 18320 6246;6244;9359;9876 12645 12866 21603 21603 1110 0.049747044337891566 HAGSLLLKM 9 Unmodified _HAGSLLLKM_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2809448242188 2 485.281137 968.547722 0.7697 0.00037352 0.42051 0.00020407 1.1902 0.00057759 485.28117165659575 48.829 0.35315 43.433 43.203 43.556 -5.3961 31 20 2 0 0 0 0.0071894 1 30397 30397 111.29 61.354 1 22523000 18321 6246;6244;9359;9876 12645 12867 21604 21604 0.062190082963979876 HAGSLLLKM 9 Unmodified _HAGSLLLKM_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MSMS AL20221201_MKP_PDAC_01 4 485.2810668945312 2 485.281137 968.547722 NaN NaN NaN NaN NaN NaN NaN 48.943 1 43.547 43.047 44.047 -5.3961 0 0 0 0.027645 1 30526 30526 69.105 30.929 1 18322 6246;6244;9359;9876 12645 12867 21605 21605 0.062190082963979876 HAGSLVSVM 9 Oxidation (M) _HAGSLVSVM(Oxidation (M))_ HAGSLVSVM(1) HAGSLVSVM(54) 0 0 1 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7320251464844 2 458.731477 915.448402 0.070944 3.2544E-05 -0.08826 -4.0488E-05 -0.017316 -7.9434E-06 458.7313788431144 29.118 0.19963 29.118 29.022 29.222 0 12 9 2 0 0 0 0.03327 1 15087 15087 53.576 28.902 1 968920 18323 3242 12646 12868 21606 21606 582 -0.012704343883456204 HAGSLVSVM 9 Unmodified _HAGSLVSVM_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.734619140625 2 450.73402 899.453487 0.93841 0.00042297 0.21759 9.8077E-05 1.156 0.00052105 450.73421248873484 49.773 0.29873 44.234 44.167 44.466 -5.5391 24 18 2 0 0 0 0.0094915 1 31196 31196 81.864 51.639 1 10238000 18324 3242 12646 12869 21607 21607 -0.00026130525736789423 HAGYHPYLGCI 11 Unmodified _HAGYHPYLGCI_ 0 0 0 nc|ENSG00000156869|Q6ZNA5-2|FRRS1;ENST00000492943.1_1_1:100177041-100181213:-|nuORF;ENSG00000156869|ENST00000646001|FRRS1 nc|ENSG00000156869|Q6ZNA5-2|FRRS1 nc|ENSG00000156869|Q6ZNA5-2|FRRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8623352050781 3 410.862331 1229.56516 -0.0098429 -4.0441E-06 2.4213 0.00099482 2.4115 0.00099078 410.8635003625093 39.17 0.21834 38.883 38.763 38.981 -0.28687 19 9 3 0 0 0 0.61011 1 20668 20668 5.4027 1.2132 1 3106000 18325 16295 12647 12870 21608 21608 -0.04043696168605493 HAGYSVVEM 9 Oxidation (M) _HAGYSVVEM(Oxidation (M))_ HAGYSVVEM(1) HAGYSVVEM(100) 0 0 1 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENST00000464728.5_1_16:841811-841949:+|nuORF ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7272033691406 2 504.726392 1007.43823 0.77084 0.00038906 -0.1772 -8.9438E-05 0.59364 0.00029962 504.7263642606759 28.671 0.27674 25.522 25.38 25.656 -3.1482 27 13 3 0 0 0 0.0086629 1 16012 16012 101.72 61.772 1 17684000 18326 4021 12648 12871 21609 21609 717 -0.06519042113586693 HAHEAFNTAF 10 Unmodified _HAHEAFNTAF_ 0 0 0 ENSG00000139211|ENST00000550413|AMIGO2 ENSG00000139211|ENST00000550413|AMIGO2 ENSG00000139211|ENST00000550413|AMIGO2 MSMS AL20221201_MKP_PDAC_01 4 572.7640380859375 2 572.762155 1143.50976 NaN NaN NaN NaN NaN NaN NaN 38.061 1 33.692 33.192 34.192 -4.3689 0 0 0 0.48286 1 22406 22406 38.176 17.761 1 18327 5138 12649 12872 21610 21610 -0.056257863647033446 HAHGREDL 8 Unmodified _HAHGREDL_ 0 0 0 REV__nc|ENSG00000165752|Q86UX6-2|STK32C REV__nc|ENSG00000165752|Q86UX6-2|STK32C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7280883789062 2 467.728115 933.441677 NaN NaN NaN NaN NaN NaN NaN 30.186 1 30.186 29.686 30.686 0 0 0 0 0.94061 1 15672 15672 12.532 2.3482 1 + 18328 22047 12650 12873 21611 21611 -0.027706112247301462 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.5105285644531 3 351.510174 1051.50869 0.011628 4.0874E-06 -0.029641 -1.0419E-05 -0.018012 -6.3315E-06 351.5101563846806 46.91 0.81888 46.91 46.718 47.537 0 114 38 5 0 0 0 0.012158 4 25593 25593;25701;25817;25930 56.177 41.772 1 216580000 18329 4242 12651 12874 21612;21613;21614;21615 21612 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7600708007812 2 526.761623 1051.50869 0.59039 0.00031099 -0.12631 -6.6536E-05 0.46408 0.00024446 526.7615269734539 47.162 0.41631 46.81 46.626 47.042 -0.3526 75 20 5 0 0 0 0.013472 2 25221 25221;25332 70.716 45.316 1 199380000 18330 4242 12651 12874 21616;21617 21616 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.5104370117188 3 351.510174 1051.50869 0.64554 0.00022692 0.046016 1.6175E-05 0.69156 0.00024309 351.5101602576587 47.149 0.35512 46.805 46.653 47.008 -0.34391 47 17 4 0 0 0 0.016494 2 25231 25231;25336 49.933 34.976 1 22654000 18331 4242 12651 12874 21618;21619 21618 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7589111328125 2 526.761623 1051.50869 1.2169 0.000641 -0.80166 -0.00042228 0.4152 0.00021871 526.7611537568633 46.878 0.26283 46.844 46.693 46.956 -0.033421 41 12 4 0 0 0 0.023164 2 25186 25186;25288 60.39 44.542 1 25949000 18332 4242 12651 12874 21620;21621 21620 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5106811523438 3 351.510174 1051.50869 1.1472 0.00040324 -0.25579 -8.9913E-05 0.89137 0.00031333 351.5100377347866 46.869 0.20475 46.836 46.693 46.898 -0.033417 19 9 3 0 0 0 0.078417 1 25218 25218 41.84 26.882 1 2455700 18333 4242 12651 12874 21622 21622 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.761962890625 2 526.761623 1051.50869 0.51371 0.0002706 0.16537 8.7113E-05 0.67908 0.00035771 526.7616261848157 52.016 0.87482 46.282 46.035 46.91 -5.7345 104 54 2 0 0 0 0.0094915 4 32791 32657;32791;32926;33054 81.864 81.864 1 1380900000 18334 4242 12651 12874 21623;21624;21625;21626 21624 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5104064941406 3 351.510174 1051.50869 1.1684 0.00041072 0.020336 7.1483E-06 1.1888 0.00041787 351.5101786971283 51.99 0.67451 46.256 46.051 46.726 -5.7345 91 43 3 0 0 0 0.016494 3 32872 32727;32872;33011 49.933 39.034 1 182290000 18335 4242 12651 12874 21627;21628;21629 21628 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.759765625 2 526.761623 1051.50869 1.0421 0.00054893 -1.2573 -0.00066231 -0.21523 -0.00011338 526.7601976899144 52.67 0.29945 46.935 46.91 47.209 -5.7345 28 16 3 0 0 0 0.019979 1 33265 33265 63.563 32.926 1 52732000 18336 4242 12651 12874 21630 21630 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5107421875 3 351.510174 1051.50869 1.8351 0.00064505 -0.19683 -6.9189E-05 1.6383 0.00057586 351.51028348343084 71.67 0.17149 65.494 65.385 65.556 -6.1757 9 8 2 0 0 0 0.027803 1 46886 46886 41.84 27.434 1 13365000 18337 4242 12651 12874 21631 21631 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7620849609375 2 526.761623 1051.50869 0.95216 0.00050156 0.22316 0.00011755 1.1753 0.00061911 526.7615741139185 74.526 2.5122 68.35 67.707 70.219 -6.1757 210 134 2 0 0 0 0.0094915 11 48818 48435;48558;48691;48818;48941;49191;49318;49446;49573;49701;49826 81.864 74.396 1 38113000 18338 4242 12651 12874 21632;21633;21634;21635;21636;21637;21638;21639;21640;21641;21642 21635 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2642211914062 2 526.761623 1051.50869 0.46224 0.00024349 -1.6978 -0.00089436 -1.2356 -0.00065087 526.7609039830378 76.742 0.62214 70.567 70.219 70.841 -6.1757 43 33 2 0 0 0 0.0086179 2 50004 50004;50120 89.427 68.973 1 14062000 18339 4242 12651 12874 21643;21644 21643 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7620849609375 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.18 1 65.004 64.504 65.504 -6.1757 0 0 0 0.043758 1 46520 46520 60.39 31.308 1 18340 4242 12651 12874 21645 21645 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7611694335938 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.369 1 65.194 64.694 65.694 -6.1757 0 0 0 0.036587 1 46643 46643 63.563 33.338 1 18341 4242 12651 12874 21646 21646 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7626953125 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.561 1 65.385 64.885 65.885 -6.1757 0 0 0 0.060495 1 46772 46772 53.576 30.427 1 18342 4242 12651 12874 21647 21647 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7621459960938 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.75 1 65.574 65.074 66.074 -6.1757 0 0 0 0.096036 1 46909 46909 44.407 26.261 1 18343 4242 12651 12874 21648 21648 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.76171875 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 71.94 1 65.764 65.264 66.264 -6.1757 0 0 0 0.096036 1 47058 47058 44.407 22.66 1 18344 4242 12651 12874 21649 21649 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7620849609375 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 72.132 1 65.956 65.456 66.456 -6.1757 0 0 0 0.043758 1 47203 47203 60.39 37.653 1 18345 4242 12651 12874 21650 21650 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.7632446289062 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 72.698 1 66.523 66.023 67.023 -6.1757 0 0 0 0.060495 1 47558 47558 53.576 30.427 1 18346 4242 12651 12874 21651 21651 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MSMS AL20221201_MKP_PDAC_01 4 526.760986328125 2 526.761623 1051.50869 NaN NaN NaN NaN NaN NaN NaN 76.836 1 70.661 70.161 71.161 -6.1757 0 0 0 0.036587 1 50255 50255 63.563 35.076 1 18347 4242 12651 12874 21652 21652 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1802368164062 3 351.510174 1051.50869 1.5028 0.00052825 -0.59057 -0.00020759 0.91223 0.00032066 351.51007072970066 75.693 0.41171 69.518 69.376 69.787 -6.1757 29 21 2 0 0 0 0.16785 1 49554 49554 21.537 19.254 1 6457300 18348 4242 12651 12874 21653 21653 -0.015000007336311683 HAHLDIEAF 9 Unmodified _HAHLDIEAF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1800537109375 3 351.510174 1051.50869 1.5103 0.00053087 -0.06401 -2.25E-05 1.4463 0.00050837 351.5102700698086 75.465 0.14206 69.29 69.215 69.357 -6.1757 10 7 2 0 0 0 0.1474 1 49390 49390 20.415 18.132 1 5724000 18349 4242 12651 12874 21654 21654 -0.015000007336311683 HAHLLSDLQF 10 Unmodified _HAHLLSDLQF_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2078857421875 3 394.208495 1179.60366 -0.076243 -3.0055E-05 0.085359 3.3649E-05 0.0091159 3.5936E-06 394.2082971177783 16.934 0.7546 16.939 16.357 17.112 0.0050564 83 57 3 0 0 0 0.68719 1 8346 8346 2.086 1.0145 1 1597500 + 18350 24651 12652 12875 21655 21655 0.021039327375547145 HAHQFLQNEY 10 Unmodified _HAHQFLQNEY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.7982788085938 2 643.799269 1285.58398 -0.68569 -0.00044145 -0.42845 -0.00027584 -1.1141 -0.00071728 644.3005635631204 29.852 0.13731 29.852 29.815 29.953 0 13 7 2 0 0 0 0.63399 1 15516 15516 9.3831 2.2814 1 2850000 18351 7694 12653 12876 21656 21656 -0.047384432731860215 HAHQFLQNEY 10 Unmodified _HAHQFLQNEY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.3003540039062 2 643.799269 1285.58398 0.47715 0.00030719 -1.5449 -0.00099462 -1.0678 -0.00068743 644.2999179101686 29.837 0.11351 29.757 29.728 29.841 -0.080429 7 4 2 0 0 0 0.63399 1 15490 15490 9.3831 3.6513 1 2223200 18352 7694 12653 12876 21657 21657 -0.047384432731860215 HAHQFLQNEY 10 Unmodified _HAHQFLQNEY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.79833984375 2 643.799269 1285.58398 0.6245 0.00040206 -1.0498 -0.00067587 -0.42531 -0.00027381 643.7986444860271 33.216 0.1703 29.359 29.309 29.48 -3.8562 17 9 2 0 0 0 0.041224 1 19030 19030 62.573 36.305 1 9917000 18353 7694 12653 12876 21658 21658 -0.047384432731860215 HAHQFLQNEY 10 Unmodified _HAHQFLQNEY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS AL20221201_MKP_PDAC_01 4 429.5359802246094 3 429.535271 1285.58398 NaN NaN NaN NaN NaN NaN NaN 33.248 1 29.331 28.831 29.831 -3.9172 0 0 0 0.060005 1 19053 19053 38.615 30.669 1 18354 7694 12653 12876 21659 21659 -0.047384432731860215 HAHVDKVTY 9 Unmodified _HAHVDKVTY_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1856384277344 3 357.185691 1068.53524 -0.58851 -0.00021021 0.38988 0.00013926 -0.19862 -7.0946E-05 357.18600040148334 16.121 0.18782 16.121 16.029 16.217 0 117 41 4 0 0 0 0.10734 1 7820 7820 36.506 30.314 1 3806200 18355 8969 12654 12877 21660 21660 0.0037168815772474773 HAHVDKVTY 9 Unmodified _HAHVDKVTY_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1862182617188 3 357.185691 1068.53524 0.99717 0.00035618 0.042985 1.5353E-05 1.0402 0.00037153 357.1857146958932 17.061 0.29311 14.474 14.304 14.597 -2.5866 173 54 4 0 0 0 0.013323 3 8823 8823;8838;8927 55.503 48.872 1 43810000 18356 8969 12654 12877 21661;21662;21663 21661 0.0037168815772474773 HAHVDKVTY 9 Unmodified _HAHVDKVTY_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2733764648438 2 535.274898 1068.53524 0.24151 0.00012928 -0.34103 -0.00018254 -0.099512 -5.3266E-05 535.2745510050376 17.059 0.13711 14.473 14.385 14.522 -2.5866 42 26 2 0 0 0 0.044296 1 8845 8845 47.594 23.574 1 2222100 18357 8969 12654 12877 21664 21664 0.0037168815772474773 HAHVDKVTY 9 Unmodified _HAHVDKVTY_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.185691 1068.53524 -0.049415 -1.765E-05 0.91154 0.00032559 0.86212 0.00030794 357.1859628389993 16.277 0.12162 16.282 16.202 16.323 0.0050564 0.080534 0.00038208 NaN 36.506 18 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1182400 18358 8969 12654 12877 0.0037168815772474773 HAHWCGCGQF 10 Unmodified _HAHWCGCGQF_ 0 0 0 REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4862670898438 3 382.484977 1144.4331 0.02043 7.8142E-06 4.1978 0.0016056 4.2182 0.0016134 382.48737479692244 64.28 0.38428 64.28 64.022 64.407 0 20 16 2 0 0 0 0.70951 1 35827 35827 0.77653 0 1 942790 + 18359 20543 12655 12878 21665 21665 -0.13333624457209226 HAHWCGCGQF 10 Unmodified _HAHWCGCGQF_ 0 0 0 REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF REV__ENST00000575500.5_2_17:78163648-78178987:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.4870300292969 3 382.484977 1144.4331 0.67765 0.00025919 0.93695 0.00035837 1.6146 0.00061756 382.48612367065294 62.48 0.35134 61.992 61.809 62.161 -0.48764 33 16 4 0 0 0 0.68719 1 34014 34014 2.086 0 1 4665400 + 18360 20543 12655 12878 21666 21666 -0.13333624457209226 HAHWEKGGL 9 Unmodified _HAHWEKGGL_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;ENST00000539757.1_1_12:9459887-9464602:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7823486328125 2 517.761958 1033.50936 1.429 0.00073988 -0.97796 -0.00050635 0.45103 0.00023353 517.7608427992149 33.914 0.29069 29.929 29.842 30.133 -3.9853 22 15 2 0 0 0 0.18118 1 19486 19486 19.257 2.3147 1 4668800 18361 479 12656 12879 21667 21667 -0.006051612939018014 HAHYFLTY 8 Unmodified _HAHYFLTY_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.5025939941406 3 351.171382 1050.49232 NaN NaN NaN NaN NaN NaN NaN 17.25 1 17.25 16.75 17.75 0 0 0 0 0.9706 1 8484 8484 4.3292 1.334 1 + 18362 24566 12657 12880 21668 21668 -0.030910818997199385 HAIDIICGF 9 Unmodified _HAIDIICGF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.75048828125 2 494.74967 987.484787 0.171 8.4604E-05 0.6023 0.00029799 0.7733 0.00038259 494.7499828612245 79.606 0.35166 79.606 79.446 79.797 0 30 14 3 0 0 0 0.2001 2 44265 44169;44265 23.148 14.555 1 1104800 18363 16067;16068 12658 12881 21669;21670 21670 -0.009455574916387377 HAIDIICGF 9 Unmodified _HAIDIICGF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7498474121094 2 494.74967 987.484787 1.0835 0.00053604 -0.68761 -0.0003402 0.39584 0.00019584 494.74974684242943 80.145 0.32809 79.655 79.479 79.807 -0.48933 28 12 3 0 0 0 0.28047 1 43876 43876 18.135 9.5417 1 1031800 18364 16067;16068 12658 12881 21671 21671 -0.009455574916387377 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(74)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2608032226562 2 523.260402 1044.50625 0.39556 0.00020698 -0.12596 -6.5909E-05 0.26961 0.00014107 523.260475704623 67.481 0.42806 66.999 66.78 67.208 -0.48218 54 18 4 0 0 0 0.012158 2 36906 36806;36906 74.396 51.459 1 13536000 18365 16067;16068 12658 12882 21672;21673 21673 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(82)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.26220703125 2 523.260402 1044.50625 0.92116 0.00048201 -0.048623 -2.5442E-05 0.87253 0.00045656 523.2603773466918 73.17 1.1688 66.994 66.179 67.348 -6.1757 118 58 3 0 0 0 0.0094915 5 47793 47561;47678;47793;47912;48055 81.864 53.377 1 41599000 18366 16067;16068 12658 12882 21674;21675;21676;21677;21678 21676 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(82)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2608032226562 2 523.260402 1044.50625 0.59811 0.00031297 -0.60033 -0.00031413 -0.0022198 -1.1615E-06 523.2601333126378 76.532 2.0521 70.357 69.357 71.409 -6.1757 202 113 3 0 0 0 0.0094915 5 50094 49515;49640;49784;49976;50094 81.864 56.465 1 72319000 18367 16067;16068 12658 12882 21679;21680;21681;21682;21683 21683 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(71)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.26025390625 2 523.260402 1044.50625 0.96607 0.00050551 -0.92336 -0.00048316 0.042711 2.2349E-05 523.2599321288052 80.284 1.2706 74.108 73.335 74.606 -6.1757 164 74 3 0 0 0 0.013472 5 52513 52383;52513;52654;52786;52907 70.716 41.133 1 43707000 18368 16067;16068 12658 12882 21684;21685;21686;21687;21688 21685 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(82)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2609252929688 2 523.260402 1044.50625 0.85253 0.00044609 -0.44682 -0.0002338 0.4057 0.00021229 523.2602860957759 81.895 2.6255 75.719 74.566 77.192 -6.1757 512 147 5 0 0 0 0.0094915 14 53543 53040;53161;53289;53418;53543;53666;53789;53909;54037;54164;54298;54438;54573;54796 81.864 56.465 1 331540000 18369 16067;16068 12658 12882 21689;21690;21691;21692;21693;21694;21695;21696;21697;21698;21699;21700;21701;21702 21693 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ HAIDIIC(1)GF HAIDIIC(78)GF 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1046.904418945312 1 1045.51353 1044.50625 0.55955 0.00058502 -0.15673 -0.00016387 0.40282 0.00042115 1045.5133571093395 81.92 1.0887 75.744 75.182 76.27 -6.1757 102 60 2 0 0 0 0.010877 1 54016 54016 77.984 45.679 1 12331000 18370 16067;16068 12658 12882 21703 21703 1002 -0.014221724629123855 HAIDIICGF 9 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GF_ 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.260402 1044.50625 0.58374 0.00030545 0.40214 0.00021042 0.98588 0.00051587 523.2607754253381 66.937 0.22458 66.955 66.857 67.082 0.018028 -0.043911 0.00034912 NaN 81.864 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1414000 18371 16067;16068 12658 12882 1002 -0.014221724629123855 HAIDIICGFL 10 Carbamidomethyl (C) _HAIDIIC(Carbamidomethyl (C))GFL_ HAIDIIC(1)GFL HAIDIIC(71)GFL 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8014526367188 2 579.802434 1157.59032 1.0169 0.00058959 -0.37527 -0.00021759 0.6416 0.000372 579.8018843324238 99.464 0.11353 93.289 93.228 93.341 -6.1757 11 6 2 0 0 0 0.024981 1 66256 66256 71.134 45.734 1 48008000 18372 16067;16068 12659 12883 21704 21704 1002 0.017823586339545727 HAIDVWQL 8 Unmodified _HAIDVWQL_ 0 0 0 REV__nc|ENSG00000143033|Q9Y483-3|MTF2 REV__nc|ENSG00000143033|Q9Y483-3|MTF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2606506347656 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 62.164 1 62.164 61.664 62.664 0 0 0 0 0.93066 1 34666 34666 14.582 1.0738 1 + 18373 20600 12660 12884 21705 21705 0.01693204617322408 HAIEESVVL 9 Unmodified _HAIEESVVL_ 0 0 0 ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7729187011719 2 498.771657 995.528761 0.86348 0.00043068 -0.12148 -6.059E-05 0.742 0.00037009 498.77157630358136 46.054 0.43364 46.054 45.86 46.294 0 53 20 3 0 0 0 0.0094915 2 25089 25089;25205 81.864 51.639 1 63882000 18374 5875 12661 12885 21706;21707 21706 0.030817502063428037 HAIEESVVL 9 Unmodified _HAIEESVVL_ 0 0 0 ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.5377197265625 1 996.536037 995.528761 0.49938 0.00049765 -0.66686 -0.00066455 -0.16747 -0.00016689 996.5361491364207 46.052 0.19168 46.052 45.957 46.149 0 11 8 2 0 0 0 0.023164 1 25139 25139 60.39 37.241 1 1444200 18375 5875 12661 12885 21708 21708 0.030817502063428037 HAIEESVVL 9 Unmodified _HAIEESVVL_ 0 0 0 ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.77294921875 2 498.771657 995.528761 0.50884 0.00025379 -0.14098 -7.0317E-05 0.36786 0.00018348 498.7716446960565 51.922 0.45632 46.187 45.951 46.407 -5.7345 50 30 2 0 0 0 0.0086629 2 32649 32649;32797 101.72 50.867 1 108950000 18376 5875 12661 12885 21709;21710 21709 0.030817502063428037 HAIEESVVL 9 Unmodified _HAIEESVVL_ 0 0 0 ENSG00000147677|ENST00000521861|EIF3H;ENST00000517974.1_1_8:117671049-117768052:-|nuORF;ENST00000518034.5_1_8:117671049-117768048:-|nuORF ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.771657 995.528761 0.47615 0.00023749 0.73313 0.00036566 1.2093 0.00060315 498.7723261428817 45.951 0.19883 45.923 45.844 46.043 -0.028011 -0.13177 0.00080793 NaN 101.72 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1079600 18377 5875 12661 12885 0.030817502063428037 HAIEGNKKS 9 Unmodified _HAIEGNKKS_ 0 0 0 nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000586103.5_1_17:40855746-40880959:-|nuORF nc|ENSG00000108799|Q92800-5|EZH1 nc|ENSG00000108799|Q92800-5|EZH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2692260742188 2 492.267073 982.519593 NaN NaN NaN NaN NaN NaN NaN 39.407 1 39.418 38.918 39.918 0.011452 0 0 0 0.76439 1 20987 20987 7.2892 0.56607 1 18378 2607 12662 12886 21711 21711 0.02763401640675056 HAIFDRHKA 9 Unmodified _HAIFDRHKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7708129882812 2 547.796332 1093.57811 0.39778 0.0002179 3.2422 0.0017761 3.64 0.001994 547.7985664456688 66.615 0.31544 60.44 60.349 60.664 -6.1757 26 17 2 0 0 0 0.19298 1 43401 43401 13.508 3.3245 1 17133000 + 18379 19955;17710 12663 12887 21712 21712 0.03506503005792183 HAIFTEITTF 10 Unmodified _HAIFTEITTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.3067016601562 2 590.305864 1178.59717 0.49133 0.00029004 0.60884 0.0003594 1.1002 0.00064943 590.3062558749139 71.412 0.35 70.935 70.747 71.097 -0.47735 41 14 4 0 0 0 0.021369 2 39032 39032;39127 74.423 60.517 1 5932400 18380 8367 12664 12888 21713;21714 21713 0.015019947861674154 HAIFTEITTF 10 Unmodified _HAIFTEITTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.306396484375 2 590.305864 1178.59717 1.1085 0.00065433 -1.8576 -0.0010965 -0.74913 -0.00044222 590.304501853572 70.857 0.2809 70.892 70.698 70.979 0.035515 29 12 3 0 0 0 0.011274 1 38988 38988 85.357 69.208 1 6275100 18381 8367 12664 12888 21715 21715 0.015019947861674154 HAIFTEITTF 10 Unmodified _HAIFTEITTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3042602539062 2 590.305864 1178.59717 0.94896 0.00056018 0.54651 0.00032261 1.4955 0.00088279 590.306167824893 92.163 0.71743 85.988 85.55 86.268 -6.1757 66 42 2 0 0 0 0.0071864 3 60818 60818;60949;61087 92.822 66.554 1 19246000 18382 8367 12664 12888 21716;21717;21718 21716 0.015019947861674154 HAIGKSQSF 9 Unmodified _HAIGKSQSF_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.E375Dfs*23|1|0.07|ENSG00000129422|chr8:17754679-17754683|TGTCT/-|frameshift_variant nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7569580078125 2 487.756341 973.498129 0.57733 0.0002816 0.4491 0.00021905 1.0264 0.00050065 487.7564559497165 17.969 0.22591 15.382 15.266 15.492 -2.5866 23 14 2 0 0 0 0.032796 1 9411 9411 53.833 28.433 1 4004100 18383 16181 12665 12889 21719 21719 0.01032016611952713 HAIIDEQPLIF 11 Unmodified _HAIIDEQPLIF_ 0 0 0 nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4;ENST00000422797.5_1_2:109288812-109289630:+|nuORF nc|ENSG00000256977|P0CW19-2|LIMS3 nc|ENSG00000256977|P0CW19-2|LIMS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.3533935546875 2 648.353345 1294.69214 0.053543 3.4715E-05 -3.5489 -0.0023009 -3.4953 -0.0022662 648.3494616310631 75.307 0.37625 75.307 75.146 75.523 0 24 19 2 0 0 0 0.5229 1 41861 41861 15.248 11.304 1 528050 18384 7911 12666 12890 21720 21720 0.05657928257369349 HAIIDEQPLIF 11 Unmodified _HAIIDEQPLIF_ 0 0 0 nc|ENSG00000256977|P0CW19-2|LIMS3;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;nc|ENSG00000169756|P48059-3|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;ENSG00000256671|ENST00000632897|LIMS4;ENST00000422797.5_1_2:109288812-109289630:+|nuORF nc|ENSG00000256977|P0CW19-2|LIMS3 nc|ENSG00000256977|P0CW19-2|LIMS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.3548583984375 2 648.353345 1294.69214 0.51846 0.00033615 -0.45706 -0.00029634 0.061402 3.981E-05 648.3529286249236 75.703 0.24304 75.226 75.084 75.327 -0.47714 17 10 2 0 0 0 0.42108 1 41413 41413 20.415 6.5085 1 1058000 18385 7911 12666 12890 21721 21721 0.05657928257369349 HAIKLLTSL 9 Unmodified _HAIKLLTSL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3154296875 2 498.316035 994.617516 0.64653 0.00032217 -1.5542 -0.00077447 -0.90765 -0.00045229 498.31518534079044 52.223 0.22137 52.164 52.067 52.289 -0.058918 17 10 2 0 0 0 0.047788 1 28300 28300 45.7 18.071 1 2154300 18386 4011 12667 12891 21722 21722 0.11999210236660929 HAIKSVKIY 9 Unmodified _HAIKSVKIY_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5499877929688 3 353.550082 1057.62842 0.79202 0.00028002 0.24265 8.5789E-05 1.0347 0.00036581 353.55012234683824 26.075 0.38736 23.124 22.894 23.281 -2.9511 40 24 2 0 0 0 0.069655 2 14356 14229;14356 40.239 21.866 1 17554000 18387 4113 12668 12892 21723;21724 21724 0.10190612610949756 HAIKVGVKY 9 Unmodified _HAIKVGVKY_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENST00000450418.1_1_3:4024502-4025426:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8080444335938 2 507.808377 1013.6022 -0.10535 -5.3498E-05 -0.16048 -8.1491E-05 -0.26583 -0.00013499 507.8082784932198 25.183 0.22224 22.299 22.26 22.482 -2.8831 24 16 2 0 0 0 0.018301 1 13785 13785 65.235 42.087 1 5847700 18388 5007 12669 12893 21725 21725 0.09594343439471231 HAILKSKVCF 10 Unmodified _HAILKSKVCF_ 0 0 0 REV__ENSG00000075407|ENST00000685332|ZNF37A REV__ENSG00000075407|ENST00000685332|ZNF37A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2733154296875 2 573.328619 1144.64269 0.23968 0.00013742 0.67384 0.00038633 0.91352 0.00052375 573.328826625567 50.986 0.24453 50.932 50.842 51.087 -0.053871 17 11 2 0 0 0 0.22327 1 27548 27548 19.257 3.1079 1 2615800 + 18389 17570 12670 12894 21726 21726 0.0761494176758788 HAIPPTLAM 9 Oxidation (M) _HAIPPTLAM(Oxidation (M))_ HAIPPTLAM(1) HAIPPTLAM(60) 0 0 1 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7588500976562 2 483.757495 965.500437 -0.14326 -6.9301E-05 0.53565 0.00025912 0.39239 0.00018982 483.7578244153417 33.724 1.2543 33.565 33.171 34.425 -0.15918 107 51 3 0 0 0 0.023164 4 17558 17558;17658;17764;17875 60.39 17.552 1 2801300 18390 3829 12671 12895 21727;21728;21729;21730 21727 683 0.016307290253962492 HAIPPTLAM 9 Oxidation (M) _HAIPPTLAM(Oxidation (M))_ HAIPPTLAM(1) HAIPPTLAM(64) 0 0 1 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7566223144531 2 483.757495 965.500437 1.1742 0.00056804 -1.1937 -0.00057745 -0.01947 -9.4189E-06 483.75778273006637 37.957 0.36974 33.588 33.286 33.655 -4.3689 32 21 2 0 0 0 0.019979 1 22192 22192 63.563 19.156 1 6680300 18391 3829 12671 12895 21731 21731 683 0.016307290253962492 HAIPPTLAM 9 Oxidation (M) _HAIPPTLAM(Oxidation (M))_ HAIPPTLAM(1) HAIPPTLAM(82) 0 0 1 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7575378417969 2 483.757495 965.500437 0.5913 0.00028605 -0.45279 -0.00021904 0.13851 6.7007E-05 483.75744558798556 38.696 1.0401 34.245 33.818 34.858 -4.4509 112 66 2 0 0 0 0.0094915 3 22611 22611;22886;23021 81.864 21.474 1 15306000 18392 3829 12671 12895 21732;21733;21734 21732 683 0.016307290253962492 HAIPPTLAM 9 Unmodified _HAIPPTLAM_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.760498046875 2 475.760038 949.505523 1.1734 0.00055827 0.24308 0.00011565 1.4165 0.00067392 475.75973633480066 54.193 1.4675 48.328 47.529 48.996 -5.8653 117 90 2 0 0 0 0.03327 4 33940 33940;34077;34228;34358 53.576 17.531 1 22979000 18393 3829 12671 12896 21735;21736;21737;21738 21735 0.02875032888016449 HAIQDLLVF 9 Unmodified _HAIQDLLVF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2982788085938 2 528.297842 1054.58113 0.77466 0.00040925 -0.064414 -3.403E-05 0.71025 0.00037522 528.2979374320729 80.721 0.51403 80.228 79.929 80.443 -0.49247 39 21 2 0 0 0 0.14594 1 44201 44201 37.974 27.15 1 1484600 18394 313 12672 12897 21739 21739 0.05602333339948018 HAIQDLLVF 9 Unmodified _HAIQDLLVF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2982788085938 2 528.297842 1054.58113 1.0693 0.00056489 -0.1715 -9.0605E-05 0.89776 0.00047428 528.7990478983286 98.475 0.1282 92.299 92.237 92.365 -6.1757 13 8 2 0 0 0 0.021948 1 65312 65312 68.081 30.107 1 30079000 18395 313 12672 12897 21740 21740 0.05602333339948018 HAIQDLLVF 9 Unmodified _HAIQDLLVF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 528.297842 1054.58113 0.086345 4.5616E-05 -0.46319 -0.0002447 -0.37685 -0.00019909 528.2987318104343 79.97 0.11264 80.028 79.957 80.07 0.057587 -0.1004 -0.00038779 NaN 37.974 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 564610 18396 313 12672 12897 0.05602333339948018 HAIQDLLVFY 10 Unmodified _HAIQDLLVFY_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8297729492188 2 609.829506 1217.64446 0.53455 0.00032598 -1.2957 -0.00079017 -0.76119 -0.00046419 609.8287898126013 85.588 0.17014 85.087 85.037 85.207 -0.5015 18 12 2 0 0 0 0.52097 1 46859 46859 15.248 10.351 1 894090 18397 313 12673 12898 21741 21741 0.04434274057211951 HAIQDLLVFY 10 Unmodified _HAIQDLLVFY_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.829833984375 2 609.829506 1217.64446 NaN NaN NaN NaN NaN NaN NaN 85.037 1 85.1 84.6 85.6 0.063171 0 0 0 0.029584 1 47072 47072 62.573 33.491 1 18398 313 12673 12898 21742 21742 0.04434274057211951 HAIRLLLEY 9 Unmodified _HAIRLLLEY_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134201|ENST00000256593|GSTM5;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4 ENSG00000134184|ENST00000309851|GSTM1;nc|ENSG00000168765|Q03013-3|GSTM4 ENSG00000134184|ENST00000309851|GSTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3326416015625 2 564.332216 1126.64988 1.0021 0.0005655 -4.1354 -0.0023337 -3.1333 -0.0017682 564.3298905454748 58.503 0.8219 58.442 58.038 58.86 -0.060719 115 41 4 0 0 0 0.0090524 3 31889 31786;31889;32013 85.642 65.188 1 53663000 18399 4565;7796 12674 12899 21743;21744;21745 21744 0.09161997639648689 HAIRLLLEY 9 Unmodified _HAIRLLLEY_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134201|ENST00000256593|GSTM5;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4 ENSG00000134184|ENST00000309851|GSTM1;nc|ENSG00000168765|Q03013-3|GSTM4 ENSG00000134184|ENST00000309851|GSTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.556884765625 3 376.557236 1126.64988 0.60987 0.00022965 0.13722 5.1669E-05 0.74709 0.00028132 376.55723747110056 58.477 0.44485 58.416 58.235 58.679 -0.060719 50 22 4 0 0 0 0.026094 2 31795 31795;31905 43.772 27.623 1 10861000 18400 4565;7796 12674 12899 21746;21747 21746 0.09161997639648689 HAIRLLLEY 9 Unmodified _HAIRLLLEY_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134201|ENST00000256593|GSTM5;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4 ENSG00000134184|ENST00000309851|GSTM1;nc|ENSG00000168765|Q03013-3|GSTM4 ENSG00000134184|ENST00000309851|GSTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3333129882812 2 564.332216 1126.64988 1.2535 0.00070739 -0.3423 -0.00019317 0.91121 0.00051422 564.331873061444 93.934 0.47108 87.758 87.647 88.118 -6.1757 55 26 4 0 0 0 0.0086722 1 62176 62176 88.954 54.851 1 265550000 18401 4565;7796 12674 12899 21748 21748 0.09161997639648689 HAIRLLLEY 9 Unmodified _HAIRLLLEY_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1;ENST00000490171.1_1_1:110230495-110231001:+|nuORF;ENST00000461767.5_1_1:110198981-110199949:+|nuORF;ENST00000369833.5_1_1:110198981-110199543:+|nuORF;ENST00000479578.5_1_1:110198981-110200495:+|nuORF;ENST00000464733.5_1_1:110198981-110200115:+|nuORF;nc|ENSG00000134184|P09488-2|GSTM1;ENSG00000134201|ENST00000256593|GSTM5;nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4 ENSG00000134184|ENST00000309851|GSTM1;nc|ENSG00000168765|Q03013-3|GSTM4 ENSG00000134184|ENST00000309851|GSTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5577392578125 3 376.557236 1126.64988 1.5819 0.00059568 -0.037337 -1.406E-05 1.5446 0.00058162 376.5571536865138 93.928 0.195 87.753 87.647 87.842 -6.1757 27 10 3 0 0 0 0.026094 1 62180 62180 43.772 27.623 1 57651000 18402 4565;7796 12674 12899 21749 21749 0.09161997639648689 HAISCVEMY 9 Carbamidomethyl (C),Oxidation (M) _HAISC(Carbamidomethyl (C))VEM(Oxidation (M))Y_ HAISC(1)VEMY HAISCVEM(1)Y HAISC(54)VEMY HAISCVEM(54)Y 0 1 1 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2394409179688 2 563.238809 1124.46307 -0.10553 -5.9438E-05 0.84102 0.00047369 0.73549 0.00041426 563.2400216694914 29.201 0.22631 29.201 29.102 29.328 0 30 10 4 0 0 0 0.03327 1 15103 15103 53.576 41.044 1 3839800 18403 3240 12675 12900 21750 21750 334 581 -0.09418730302513723 HAISCVEMY 9 Carbamidomethyl (C),Oxidation (M) _HAISC(Carbamidomethyl (C))VEM(Oxidation (M))Y_ HAISC(1)VEMY HAISCVEM(1)Y HAISC(100)VEMY HAISCVEM(100)Y 0 1 1 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.74072265625 2 563.238809 1124.46307 0.97295 0.000548 -0.09087 -5.1182E-05 0.88208 0.00049682 563.2391828018373 33.239 0.33898 29.374 29.215 29.554 -3.8654 50 20 4 0 0 0 0.0086629 2 18998 18998;19063 101.72 87.816 1 46495000 18404 3240 12675 12900 21751;21752 21751 334 581 -0.09418730302513723 HAISCVEMY 9 Carbamidomethyl (C) _HAISC(Carbamidomethyl (C))VEMY_ HAISC(1)VEMY HAISC(42)VEMY 0 1 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.7684326171875 2 555.241352 1108.46815 0.62749 0.00034841 -0.35245 -0.0001957 0.27504 0.00015271 555.241712553758 44.289 0.38359 39.437 39.264 39.648 -4.852 71 27 3 0 0 0 0.081537 1 27045 27045 42.095 30.454 1 37277000 18405 3240 12675 12901 21753 21753 334 -0.08174426439904892 HAISDLSMY 9 Unmodified _HAISDLSMY_ 0 0 0 nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO nc|ENSG00000117009|O15229-3|KMO nc|ENSG00000117009|O15229-3|KMO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1039.569580078125 1 1036.47681 1035.46953 -0.56265 -0.00058318 0.50385 0.00052223 -0.058806 -6.0951E-05 1036.4776125475883 77.221 0.39806 76.738 76.517 76.915 -0.4826 54 17 4 0 0 0 0.58466 1 42202 42202 2.3027 1.5091 1 14214000 18406 3277 12676 12902 21754 21754 -0.04678469079499337 HAISDLSMY 9 Unmodified _HAISDLSMY_ 0 0 0 nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO nc|ENSG00000117009|O15229-3|KMO nc|ENSG00000117009|O15229-3|KMO MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1036.47681 1035.46953 -0.40554 -0.00042033 0.54082 0.00056055 0.13528 0.00014022 1036.4775231862611 76.696 0.38231 76.696 76.491 76.874 0 -0.040007 -1.5961E-05 NaN 2.3027 48 15 4 NaN NaN NaN NaN 0 NaN NaN 0 10415000 18407 3277 12676 12902 -0.04678469079499337 HAISDLSMY 9 Unmodified _HAISDLSMY_ 0 0 0 nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO nc|ENSG00000117009|O15229-3|KMO nc|ENSG00000117009|O15229-3|KMO MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1036.47681 1035.46953 0.49803 0.00051619 1.3685 0.0014184 1.8665 0.0019346 1036.4783166138598 76.723 0.23293 76.774 76.656 76.889 0.05011 0.03756 0.00084192 NaN 2.3027 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1591100 18408 3277 12676 12902 -0.04678469079499337 HAIVVQKN 8 Unmodified _HAIVVQKN_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20221201_MKP_PDAC_01 4 454.77001953125 2 454.769252 907.52395 NaN NaN NaN NaN NaN NaN NaN 25.534 1 22.651 22.151 23.151 -2.8831 0 0 0 0.77249 1 13985 13985 24.674 5.2349 1 + 18409 20626 12677 12903 21755 21755 0.06648910854232781 HAKHNQPGHDT 11 Unmodified _HAKHNQPGHDT_ 0 0 0 REV__ENSG00000136010|ENST00000258494|ALDH1L2 REV__ENSG00000136010|ENST00000258494|ALDH1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5307006835938 3 414.53052 1240.56973 -0.54992 -0.00022796 2.0229 0.00083854 1.4729 0.00061058 414.53089030785077 18.561 0.19396 18.584 18.51 18.704 0.023106 48 30 2 0 0 0 0.74203 1 9307 9307 0.08335 0 1 571170 + 18410 20127 12678 12904 21756 21756 -0.04093095701500715 HAKLWHPHC 9 Unmodified _HAKLWHPHC_ 0 0 0 REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7792358398438 2 564.779628 1127.5447 0.19626 0.00011084 -1.9203 -0.0010845 -1.724 -0.00097367 564.7789623759643 38.008 0.33994 37.736 37.562 37.902 -0.27133 36 16 3 0 0 0 0.43463 1 19955 19955 10.824 2.0785 1 4196400 + 18411 24916 12679 12905 21757 21757 -0.013968220377591933 HAKLWHPHC 9 Unmodified _HAKLWHPHC_ 0 0 0 REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7792358398438 2 564.779628 1127.5447 0.19626 0.00011084 -1.9203 -0.0010845 -1.724 -0.00097367 564.7789623759643 38.008 0.33994 37.736 37.562 37.902 -0.27133 36 16 3 0 0 0 0.20139 1 19955 19955 10.824 4.1008 1 4196400 + 18412 24916 12679 12905 21758 21758 -0.013968220377591933 HAKLWHPHC 9 Unmodified _HAKLWHPHC_ 0 0 0 REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.779628 1127.5447 0.23888 0.00013491 -1.4258 -0.00080524 -1.1869 -0.00067032 564.7786922414817 37.561 0.23496 37.578 37.438 37.673 0.01704 -0.079094 0.00024213 NaN 10.824 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3742300 + 18413 24916 12679 12905 -0.013968220377591933 HALAAAELARA 11 Unmodified _HALAAAELARA_ 0 0 0 REV__ENST00000294981.8_1_1:206905793-206906060:+|nuORF REV__ENST00000294981.8_1_1:206905793-206906060:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7671508789062 2 547.309272 1092.60399 1.2128 0.00066377 -1.6641 -0.00091078 -0.45131 -0.000247 547.3083638005036 46.91 0.243 46.876 46.733 46.976 -0.033421 27 11 3 0 0 0 0.29245 1 25227 25227 10.824 2.9138 1 8190300 + 18414 21701 12680 12906 21759 21759 0.0613935245742141 HALAERPA 8 Unmodified _HALAERPA_ 0 0 0 REV__ENST00000439875.1_1_9:115871640-115872087:-|nuORF REV__ENST00000439875.1_1_9:115871640-115872087:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2398376464844 2 432.737951 863.46135 0.8046 0.00034818 -0.056137 -2.4293E-05 0.74846 0.00032389 432.73788205884216 43.47 0.42493 38.705 38.525 38.95 -4.7648 61 27 3 0 0 0 0.48583 1 26348 26348 36.127 5.9022 1 32864000 + 18415 27069 12681 12907 21760 21760 0.024157647860306497 HALALAWTF 9 Unmodified _HALALAWTF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2794799804688 2 515.279452 1028.54435 1.0508 0.00054146 0.27031 0.00013929 1.3211 0.00068075 515.2795299019675 81.03 0.37434 81.09 80.839 81.214 0.059929 41 14 4 0 0 0 0.013419 2 44731 44731;44845 70.865 38.559 1 24619000 18416 3859 12682 12908 21761;21762 21761 0.031220815140159175 HALALAWTF 9 Unmodified _HALALAWTF_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2794799804688 2 515.279452 1028.54435 0.81419 0.00041953 -4.0294 -0.0020763 -3.2152 -0.0016567 515.276549288753 98.533 0.38815 92.358 92.163 92.551 -6.1757 51 27 4 0 0 0 0.023761 1 65348 65348 59.795 35.121 1 331960000 18417 3859 12682 12908 21763 21763 0.031220815140159175 HALCHKRFSII 11 Unmodified _HALCHKRFSII_ 0 0 0 REV__nc|ENSG00000180190|Q86YL5-2|TDRP REV__nc|ENSG00000180190|Q86YL5-2|TDRP MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.3721313476562 2 662.868974 1323.72339 0.14583 9.6669E-05 0.092404 6.1252E-05 0.23824 0.00015792 663.3715414408617 82.554 0.54208 76.379 76.066 76.608 -6.1757 47 30 2 0 0 0 0.12183 2 54132 54132;54361 39.95 8.3139 1 33060000 + 18418 29821 12683 12909 21764;21765 21764 0.07448222810489824 HALCHKRFSII 11 Unmodified _HALCHKRFSII_ 0 0 0 REV__nc|ENSG00000180190|Q86YL5-2|TDRP REV__nc|ENSG00000180190|Q86YL5-2|TDRP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 663.3824462890625 2 662.868974 1323.72339 0.14583 9.6669E-05 0.092404 6.1252E-05 0.23824 0.00015792 663.3715414408617 82.554 0.54208 76.379 76.066 76.608 -6.1757 47 30 2 0 0 0 0.24542 1 54033 54033 22.736 3.4793 1 33060000 + 18419 29821 12683 12909 21766 21766 0.07448222810489824 HALCHRYTGF 10 Unmodified _HALCHRYTGF_ 0 0 0 REV__ENSG00000140107|ENST00000361529|SLC25A47 REV__ENSG00000140107|ENST00000361529|SLC25A47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7904663085938 2 602.78765 1203.56075 NaN NaN NaN NaN NaN NaN NaN 57.33 1 56.84 56.34 57.34 -0.48974 0 0 0 0.8671 1 31156 31156 9.3831 1.473 1 + 18420 20450 12684 12910 21767 21767 -0.032891605915210675 HALDIREHY 9 Unmodified _HALDIREHY_ 0 0 0 nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13;ENST00000547020.1_1_12:53877389-53878109:-|nuORF;ENST00000552365.1_1_12:53874968-53878035:-|nuORF;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12 nc|ENSG00000073803|O43283-5|MAP3K13 nc|ENSG00000073803|O43283-5|MAP3K13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.196533203125 3 385.196478 1152.56761 0.98345 0.00037882 2.2047 0.00084924 3.1881 0.0012281 385.19651621715116 28.227 0.42498 25.079 24.878 25.303 -3.1482 33 22 2 0 0 0 0.06294 1 15787 15787 38.615 24.209 1 12522000 18421 1114 12685 12911 21768 21768 -0.0025752443928013236 HALDLMQLY 9 Unmodified _HALDLMQLY_ 0 0 0 nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000368660.1_1_1:153751554-153752475:+|nuORF;ENST00000483574.6_1_1:153751589-153752475:+|nuORF;ENST00000468403.1_1_1:153751697-153752222:+|nuORF nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENST00000468403.1_1_1:153751697-153752222:+|nuORF nc|ENSG00000143554|Q5K4L6-2|SLC27A3 MSMS AL20221201_MKP_PDAC_01 4 552.281982421875 2 552.281334 1102.54812 NaN NaN NaN NaN NaN NaN NaN 91.969 1 85.793 85.293 86.293 -6.1757 0 0 0 0.056448 1 60805 60805 54.774 20.586 1 18422 5526;13809 12686 12912 21769 21769 0.0009438322558708023 HALDQHGRC 9 Unmodified _HALDQHGRC_ 0 0 0 REV__ENST00000400274.5_1_21:47974515-47975895:+|nuORF REV__ENST00000400274.5_1_21:47974515-47975895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7421875 2 518.740699 1035.46685 0.61144 0.00031718 1.387 0.00071949 1.9984 0.0010367 518.7414902965874 73.599 0.38111 73.123 72.871 73.252 -0.47588 37 16 3 0 0 0 0.48152 1 40260 40260 8.5933 0.68312 1 2237000 + 18423 26594 12687 12913 21770 21770 -0.04946879693784467 HALEALIHF 9 Unmodified _HALEALIHF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7896728515625 2 525.790184 1049.56581 0.48094 0.00025287 -0.94566 -0.00049722 -0.46473 -0.00024435 525.7893476699292 64.025 0.35331 63.54 63.447 63.8 -0.48512 26 17 2 0 0 0 0.036857 1 34927 34927 57.471 32.797 1 1354800 18424 10120 12688 12914 21771 21771 0.04301466542756316 HALEALIHF 9 Unmodified _HALEALIHF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7909545898438 2 525.790184 1049.56581 1.2723 0.00066898 2.0565 0.0010813 3.3288 0.0017503 525.7897233743028 94.177 0.51118 88.001 87.788 88.299 -6.1757 70 29 3 0 0 0 0.0090524 1 62389 62389 97.075 56.626 1 37590000 18425 10120 12688 12914 21772 21772 0.04301466542756316 HALEKCIAYS 10 Unmodified _HALEKCIAYS_ 0 0 0 ENST00000418058.1_1_1:65270770-65280577:+|nuORF;nc|ENSG00000162437|Q9HCJ3-2|RAVER2;ENSG00000162437|ENST00000294428|RAVER2 ENST00000418058.1_1_1:65270770-65280577:+|nuORF ENST00000418058.1_1_1:65270770-65280577:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8578796386719 3 378.858586 1133.55393 0.5576 0.00021125 -2.5462 -0.00096467 -1.9886 -0.00075342 378.85720630345327 30.469 0.2414 30.389 30.28 30.521 -0.080431 13 8 2 0 0 0 0.46514 1 15824 15824 11.518 2.5416 1 2657900 18426 6862 12689 12915 21773 21773 -0.007505182627483009 HALEKFTVY 9 Unmodified _HALEKFTVY_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2962036132812 2 554.295299 1106.57605 0.4399 0.00024383 -0.85431 -0.00047354 -0.41441 -0.0002297 554.2947096654253 40.047 0.23302 39.75 39.629 39.862 -0.29716 20 10 3 0 0 0 0.024882 1 21156 21156 58.679 24.576 1 3441200 18427 6480 12690 12916 21774 21774 0.027020294773365094 HALERLFTM 9 Oxidation (M) _HALERLFTM(Oxidation (M))_ HALERLFTM(1) HALERLFTM(120) 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2933959960938 2 567.292233 1132.56991 0.53403 0.00030295 -0.31542 -0.00017894 0.21861 0.00012401 567.7933836774453 40.934 0.19524 40.631 40.543 40.738 -0.30304 19 9 3 0 0 0 0.0039711 1 21664 21664 121.53 74.613 1 6224900 18428 3762;16168 12691 12917 21775 21775 661 0.008931879741567172 HALERLFTM 9 Oxidation (M) _HALERLFTM(Oxidation (M))_ HALERLFTM(1) HALERLFTM(53) 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2927856445312 2 567.292233 1132.56991 0.32389 0.00018374 -0.58625 -0.00033257 -0.26236 -0.00014884 567.2924673918455 41.144 0.20741 40.841 40.738 40.946 -0.30304 21 9 3 0 0 0 0.033587 1 21779 21779 53.404 23.179 1 3822300 18429 3762;16168 12691 12917 21776 21776 661 0.008931879741567172 HALERLFTM 9 Oxidation (M) _HALERLFTM(Oxidation (M))_ HALERLFTM(1) HALERLFTM(140) 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2932739257812 2 567.292233 1132.56991 0.6425 0.00036449 -0.73847 -0.00041893 -0.095966 -5.4441E-05 567.2920868039632 40.627 0.22913 40.632 40.509 40.738 0.0050583 37 10 4 0 0 0 0.00085914 1 21649 21649 140.63 87.058 1 26779000 18430 3762;16168 12691 12917 21777 21777 661 0.008931879741567172 HALERLFTM 9 Oxidation (M) _HALERLFTM(Oxidation (M))_ HALERLFTM(1) HALERLFTM(89) 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2929077148438 2 567.292233 1132.56991 0.53424 0.00030307 -0.14027 -7.9575E-05 0.39397 0.00022349 567.2923550385906 40.809 0.29752 40.808 40.711 41.008 -0.0017929 46 14 5 0 0 0 0.0086209 2 21753 21753;21857 89.401 51.25 1 27382000 18431 3762;16168 12691 12917 21778;21779 21778 661 0.008931879741567172 HALERLFTM 9 Oxidation (M) _HALERLFTM(Oxidation (M))_ HALERLFTM(1) HALERLFTM(90) 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2959594726562 2 567.292233 1132.56991 0.71659 0.00040652 0.98211 0.00055714 1.6987 0.00096366 567.2929265848392 46.229 0.44642 41.275 40.969 41.415 -4.9549 48 29 2 0 0 0 0.0085366 1 28363 28363 90.135 26.572 1 13684000 18432 3762;16168 12691 12917 21780 21780 661 0.008931879741567172 HALERLFTM 9 Unmodified _HALERLFTM_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2943725585938 2 559.294776 1116.575 0.16519 9.2388E-05 0.11379 6.3643E-05 0.27898 0.00015603 559.2950268320762 53.922 0.27703 53.855 53.704 53.981 -0.066936 35 13 4 0 0 0 0.021948 1 29233 29233 61.602 40.731 1 5978100 18433 3762;16168 12691 12918 21781 21781 0.021374918367882856 HALERLFTM 9 Unmodified _HALERLFTM_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2958984375 2 559.294776 1116.575 1.2892 0.00072102 1.085 0.00060682 2.3741 0.0013278 559.2957091437603 91.749 0.51655 85.574 85.29 85.806 -6.1757 89 28 4 0 0 0 0.020316 2 60572 60572;60694 63.227 40.079 1 72662000 18434 3762;16168 12691 12918 21782;21783 21782 0.021374918367882856 HALERLFTM 9 Unmodified _HALERLFTM_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.1998901367188 3 373.198943 1116.575 1.6508 0.00061609 1.5692 0.00058564 3.2201 0.0012017 373.199981129421 91.738 0.67893 85.563 85.127 85.806 -6.1757 43 37 2 0 0 0 0.078314 1 60626 60626 29.437 16.395 1 7767400 18435 3762;16168 12691 12918 21784 21784 0.021374918367882856 HALFEISKY 9 Unmodified _HALFEISKY_ 0 0 0 ENSG00000105971|ENST00000222693|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENST00000495841.1_1_7:116140184-116146172:+|nuORF ENSG00000105971|ENST00000222693|CAV2 ENSG00000105971|ENST00000222693|CAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.29541015625 2 554.295299 1106.57605 0.97629 0.00054116 -0.079032 -4.3807E-05 0.89726 0.00049735 554.2952656569912 53.488 0.41837 47.684 47.481 47.899 -5.8042 60 26 3 0 0 0 0.0082548 2 33842 33710;33842 96.367 65.73 1 74786000 18436 2383 12692 12919 21785;21786 21786 0.027020294773365094 HALFLLGGQTF 11 Unmodified _HALFLLGGQTF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3303833007812 2 602.329673 1202.64479 0.53373 0.00032148 -1.4458 -0.00087083 -0.91205 -0.00054936 602.3297102744993 80.826 0.20125 80.883 80.762 80.963 0.057587 17 7 3 0 0 0 0.019693 1 44666 44666 57.471 42.633 1 5593200 18437 8124 12693 12920 21787 21787 0.051576937770278164 HALGEPLH 8 Unmodified _HALGEPLH_ 0 0 0 REV__ENST00000421967.5_1_3:48335966-48336044:-|nuORF REV__ENST00000421967.5_1_3:48335966-48336044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2320251464844 2 437.232502 872.450451 0.17936 7.8423E-05 0.92293 0.00040354 1.1023 0.00048196 437.23284454608813 47.053 0.18707 47.053 46.962 47.149 0 16 8 2 0 0 0 0.80624 1 25746 25746 2.8892 0 1 3463600 + 18438 26849 12694 12921 21788 21788 0.009123624117705731 HALGESHAF 9 Unmodified _HALGESHAF_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2149047851562 2 484.732866 967.451179 -0.15923 -7.7183E-05 3.0057 0.001457 2.8464 0.0013798 484.7348893174999 22.255 0.2018 22.255 22.143 22.345 0 16 9 2 0 0 0 0.19613 1 11334 11334 12.532 3.1841 1 1555600 18439 9220 12695 12922 21789 21789 -0.03384842939192367 HALGESHAF 9 Unmodified _HALGESHAF_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7321166992188 2 484.732866 967.451179 0.1264 6.1271E-05 -0.035085 -1.7007E-05 0.091316 4.4264E-05 484.7327999040417 24.998 0.30737 22.115 21.921 22.228 -2.8831 40 28 2 0 0 0 0.0088975 1 13602 13602 104.8 51.224 1 8396700 18440 9220 12695 12922 21790 21790 -0.03384842939192367 HALGLSSRY 9 Unmodified _HALGLSSRY_ 0 0 0 nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 MSMS AL20221201_MKP_PDAC_01 4 502.2704467773438 2 502.269616 1002.52468 NaN NaN NaN NaN NaN NaN NaN 30.283 1 26.786 26.286 27.286 -3.497 0 0 0 0.13831 1 17081 17081 38.176 9.094 1 18441 7369 12696 12923 21791 21791 0.023517055032812095 HALHAMHRD 9 Unmodified _HALHAMHRD_ 0 0 0 nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4 nc|ENSG00000124493|Q14833-3|GRM4 nc|ENSG00000124493|Q14833-3|GRM4 MSMS AL20221201_MKP_PDAC_01 4 544.2665405273438 2 544.264342 1086.51413 NaN NaN NaN NaN NaN NaN NaN 17.31 1 14.724 14.224 15.224 -2.5866 0 0 0 0.6032 1 9040 9040 12.532 0 1 18442 3791 12697 12924 21792 21792 -0.02566600422801457 HALHIMAML 9 Unmodified _HALHIMAML_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS AL20221201_MKP_PDAC_01 4 518.775146484375 2 518.775165 1035.53578 NaN NaN NaN NaN NaN NaN NaN 96.37 1 90.194 89.694 90.694 -6.1757 0 0 0 0.053568 1 63861 63861 56.048 10.298 1 18443 8835 12698 12925 21793 21793 0.019430682815482214 HALHISHDEL 10 Unmodified _HALHISHDEL_ 0 0 0 ENSG00000257727|ENST00000273308|CNPY2 ENSG00000257727|ENST00000273308|CNPY2 ENSG00000257727|ENST00000273308|CNPY2 MSMS AL20221201_MKP_PDAC_01 4 391.2005615234375 3 391.2 1170.57817 NaN NaN NaN NaN NaN NaN NaN 28.706 1 25.558 25.058 26.058 -3.1482 0 0 0 0.023095 1 16039 16039 53.404 39.789 1 18444 10813 12699 12926 21794 21794 -0.000295417848519719 HALLAYTL 8 Unmodified _HALLAYTL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000553854.1_1_14:82128143-82128728:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2613830566406 2 451.260728 900.506903 0.084453 3.811E-05 -0.32637 -0.00014728 -0.24192 -0.00010917 451.260469654927 60.024 0.29842 59.533 59.372 59.671 -0.49079 30 14 3 0 0 0 0.359 1 32644 32644 48.848 12.382 1 11812000 18445 1933;6461 12700 12927 21795 21795 0.05266990248424008 HALLAYTL 8 Unmodified _HALLAYTL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000553854.1_1_14:82128143-82128728:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2605285644531 2 451.260728 900.506903 0.6917 0.00031214 -0.42719 -0.00019277 0.26451 0.00011936 451.26055169567775 59.677 0.23661 59.624 59.518 59.754 -0.053062 21 11 2 0 0 0 0.21538 1 32532 32532 67.413 21.663 1 4564100 18446 1933;6461 12700 12927 21796 21796 0.05266990248424008 HALLAYTL 8 Unmodified _HALLAYTL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENST00000419025.1_1_3:183745012-183745345:-|nuORF;ENST00000417549.1_1_13:28788954-28789521:+|nuORF;ENST00000553854.1_1_14:82128143-82128728:+|nuORF;ENST00000450915.1_1_7:88268512-88269193:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2611694335938 2 451.260728 900.506903 0.34219 0.00015442 -0.046167 -2.0833E-05 0.29603 0.00013359 451.2610159262013 65.655 0.45432 59.479 59.285 59.74 -6.1757 33 26 2 0 0 0 0.21538 2 42609 42609;42642 67.413 26.964 1 23913000 18447 1933;6461 12700 12927 21797;21798 21797 0.05266990248424008 HALNKANP 8 Unmodified _HALNKANP_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7384338378906 2 432.737951 863.46135 0.8046 0.00034818 -0.056137 -2.4293E-05 0.74846 0.00032389 432.73788205884216 43.47 0.42493 38.705 38.525 38.95 -4.7648 61 27 3 0 0 0 0.61462 2 26311 26311;26483 24.674 5.2349 1 32864000 18448 2064 12701 12928 21799;21800 21799 0.024157647860306497 HALPATGILAF 11 Unmodified _HALPATGILAF_ 0 0 0 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8197021484375 2 555.818941 1109.62333 0.4796 0.00026657 1.6915 0.00094016 2.1711 0.0012067 555.819830425416 74.515 0.3615 74.561 74.366 74.728 0.045959 29 15 3 0 0 0 0.15484 1 41094 41094 36.127 15.673 1 2576800 18449 10247 12702 12929 21801 21801 0.0729030874831551 HALPLFTSL 9 Unmodified _HALPLFTSL_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7874145507812 2 499.78711 997.559667 0.15777 7.885E-05 1.2105 0.00060501 1.3683 0.00068386 499.788000903864 77.026 0.52133 77.076 76.8 77.321 0.050102 37 21 2 0 0 0 0.068777 1 42457 42457 40.449 22.314 1 2618300 18450 7676 12703 12930 21802 21802 0.06078948311244403 HALPLFTSL 9 Unmodified _HALPLFTSL_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS AL20221201_MKP_PDAC_01 4 499.7879333496094 2 499.78711 997.559667 NaN NaN NaN NaN NaN NaN NaN 97.704 1 91.528 91.028 92.028 -6.1757 0 0 0 0.0233 1 64750 64750 74.396 23.541 1 18451 7676 12703 12930 21803 21803 0.06078948311244403 HALSEAAEVYF 11 Unmodified _HALSEAAEVYF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.7987670898438 2 618.798403 1235.58225 0.57771 0.00035749 -1.786 -0.0011052 -1.2083 -0.00074768 618.7972696594187 57.23 0.3585 56.74 56.645 57.003 -0.48974 21 16 2 0 0 0 0.10551 1 31131 31131 41.84 23.693 1 1547700 18452 4060 12704 12931 21804 21804 -0.02611497081829839 HALSEAAEVYF 11 Unmodified _HALSEAAEVYF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 618.798403 1235.58225 0.65739 0.00040679 0.012552 7.7673E-06 0.66994 0.00041456 618.7981998434095 57.095 0.35817 57.095 56.922 57.281 0 0.17755 0.00057194 NaN 41.84 39 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4059900 18453 4060 12704 12931 -0.02611497081829839 HALSFIEEY 9 Unmodified _HALSFIEEY_ 0 0 0 REV__ENSG00000205339|ENST00000379719|IPO7 REV__ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7684326171875 2 554.769114 1107.52368 0.6146 0.00034096 -2.508 -0.0013914 -1.8934 -0.0010504 554.7689713745533 44.26 0.76463 39.408 38.898 39.662 -4.852 154 52 4 0 0 0 0.37804 1 27045 27045 13.508 0.46542 1 58563000 + 18454 24223 12705 12932 21805 21805 -0.025785536562807465 HALSLKIVL 9 Unmodified _HALSLKIVL_ 0 0 0 ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 ENSG00000113569|ENST00000231498|NUP155 ENSG00000113569|ENST00000231498|NUP155 MSMS AL20221201_MKP_PDAC_01 4 497.3265686035156 2 497.326402 992.638252 NaN NaN NaN NaN NaN NaN NaN 93.137 1 86.961 86.461 87.461 -6.1757 0 0 0 0.019743 1 61631 61631 78.728 48.092 1 18455 2976 12706 12933 21806 21806 0.14163800616313438 HALSLPAESY 10 Unmodified _HALSLPAESY_ 0 0 0 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2747192382812 2 544.274564 1086.53457 -0.16701 -9.09E-05 -0.014586 -7.9386E-06 -0.1816 -9.8838E-05 544.2744768281442 45.117 0.31009 45.117 44.959 45.269 0 43 15 4 0 0 0 0.037795 1 24571 24571 64.236 52.596 1 33589000 18456 2042 12707 12934 21807 21807 -0.005231512819818818 HALSLPAESY 10 Unmodified _HALSLPAESY_ 0 0 0 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2734985351562 2 544.274564 1086.53457 0.86216 0.00046925 -1.1043 -0.00060104 -0.24213 -0.00013178 544.2737736480082 51.145 0.41055 45.496 45.297 45.707 -5.649 42 24 2 0 0 0 0.0020965 2 32093 32093;32216 108 66.157 1 63275000 18457 2042 12707 12934 21808;21809 21808 -0.005231512819818818 HALVAGIDRY 10 Unmodified _HALVAGIDRY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.803955078125 2 557.803823 1113.59309 0.88888 0.00049582 -1.3251 -0.00073913 -0.4362 -0.00024331 557.803097090058 36.451 0.1782 36.451 36.369 36.547 0 13 8 2 0 0 0 0.06987 1 19326 19326 53.404 25.775 1 3137300 18458 4328 12708 12935 21810 21810 0.04083950083122545 HALVAGIDRY 10 Unmodified _HALVAGIDRY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.2954711914062 2 557.803823 1113.59309 0.71444 0.00039852 -3.9089 -0.0021804 -3.1945 -0.0017819 557.8010516736512 41.219 0.35654 36.611 36.416 36.772 -4.6079 36 21 2 0 0 0 0.18565 1 24700 24700 34.932 12.196 1 19560000 18459 4328 12708 12935 21811 21811 0.04083950083122545 HALVAGIDRY 10 Unmodified _HALVAGIDRY_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.803823 1113.59309 -0.18678 -0.00010419 -0.045982 -2.5649E-05 -0.23276 -0.00012983 557.8036291572691 36.712 0.17361 36.462 36.336 36.51 -0.2497 -0.045905 0.0013754 NaN 53.404 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4381200 18460 4328 12708 12935 0.04083950083122545 HALWGRAQL 9 Unmodified _HALWGRAQL_ 0 0 0 ENST00000379656.7_1_19:18112104-18119556:+|nuORF ENST00000379656.7_1_19:18112104-18119556:+|nuORF ENST00000379656.7_1_19:18112104-18119556:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.196533203125 3 351.198042 1050.5723 NaN NaN NaN NaN NaN NaN NaN 30.56 1 30.56 30.06 31.06 0 0 0 0 0.81961 1 15883 15883 5.2969 1.7004 1 18461 12576 12709 12936 21812 21812 0.049034044941208776 HALYAICDVF 10 Carbamidomethyl (C) _HALYAIC(Carbamidomethyl (C))DVF_ HALYAIC(1)DVF HALYAIC(42)DVF 0 1 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.29541015625 2 604.792066 1207.56958 0.34667 0.00020966 1.2174 0.0007363 1.5641 0.00094596 605.2947939357609 91.295 0.52797 85.12 84.873 85.401 -6.1757 62 29 3 0 0 0 0.13184 1 60272 60272 42.095 32.021 1 14288000 18462 944;3759 12710 12937 21813 21813 84 -0.025902317457166646 HAMATRTRQQY 11 Unmodified _HAMATRTRQQY_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 681.8388061523438 2 681.838402 1361.66225 0.67179 0.00045805 -0.38196 -0.00026044 0.28982 0.00019761 681.8381932130944 62.216 0.52995 61.728 61.51 62.04 -0.48764 62 24 3 0 0 0 0.64126 2 33832 33832;33935 16.149 7.4037 1 9775700 18463 10435 12711 12938 21814;21815 21814 -0.0041133395961878705 HAMATRTRQQY 11 Unmodified _HAMATRTRQQY_ 0 0 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.8388061523438 2 681.838402 1361.66225 1.1556 0.00078792 -0.80124 -0.00054632 0.35435 0.00024161 681.8379908733158 69.421 0.52949 63.245 62.995 63.525 -6.1757 85 28 4 0 0 0 0.33469 2 45470 45229;45470 31.268 16.149 1 100190000 18464 10435 12711 12938 21816;21817 21817 -0.0041133395961878705 HAMEEVKKF 9 Unmodified _HAMEEVKKF_ 0 0 0 nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;ENST00000307714.12_1_1:32479575-32503673:+|nuORF nc|ENSG00000121774|Q07666-3|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5274353027344 3 373.526948 1117.55902 1.4889 0.00055615 -0.05289 -1.9756E-05 1.436 0.0005364 373.52704062830725 21.955 0.37996 19.221 19.072 19.452 -2.7348 59 21 4 0 0 0 0.044296 1 11772 11772 47.594 38.05 1 6943400 18465 3599 12712 12939 21818 21818 0.0049378559986053006 HAMEKMEEF 9 Oxidation (M) _HAM(Oxidation (M))EKMEEF_ HAM(0.98)EKM(0.02)EEF HAM(17)EKM(-17)EEF 0 0 1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2;ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000006831|ENST00000357103|ADIPOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.244873046875 2 584.244092 1166.47363 -0.15815 -9.2396E-05 0.46312 0.00027057 0.30497 0.00017818 584.2446017701232 25.483 0.35862 22.6 22.406 22.764 -2.8831 40 19 3 0 0 0 0.037253 1 13906 13906 51.415 34.302 2 5989800 18466 353;6647 12713 12940 21819 21819 42 -0.10294747648117664 HAMETMMFTF 10 3 Oxidation (M) _HAM(Oxidation (M))ETM(Oxidation (M))M(Oxidation (M))FTF_ HAM(1)ETM(1)M(1)FTF HAM(78)ETM(78)M(78)FTF 0 0 3 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.25 2 647.251059 1292.48757 -0.036134 -2.3388E-05 -0.99996 -0.00064723 -1.0361 -0.00067062 647.2506852880302 46.951 0.66922 46.951 46.781 47.45 0 100 31 4 0 0 0 0.017277 3 25755 25633;25755;25864 78.149 63.744 1 11152000 18467 9996 12714 12941 21820;21821;21822 21821 1620;1621;1622 -0.1469783821130477 HAMETMMFTF 10 3 Oxidation (M) _HAM(Oxidation (M))ETM(Oxidation (M))M(Oxidation (M))FTF_ HAM(1)ETM(1)M(1)FTF HAM(71)ETM(71)M(71)FTF 0 0 3 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.2525024414062 2 647.251059 1292.48757 0.53886 0.00034878 -0.63529 -0.00041119 -0.096429 -6.2414E-05 647.2508657966039 47.397 0.56794 47.044 46.74 47.308 -0.3526 78 27 3 0 0 0 0.024981 3 25493 25289;25391;25493 71.134 59.639 1 6957600 18468 9996 12714 12941 21823;21824;21825 21825 1620;1621;1622 -0.1469783821130477 HAMETMMFTF 10 3 Oxidation (M) _HAM(Oxidation (M))ETM(Oxidation (M))M(Oxidation (M))FTF_ 0 0 3 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 647.251059 1292.48757 1.0772 0.00069723 0.89763 0.00058099 1.9749 0.0012782 647.2511211255974 47.223 0.20101 47.19 47.123 47.324 -0.033417 0.12826 0.0020861 NaN 78.149 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1304200 18469 9996 12714 12941 1620;1621;1622 -0.1469783821130477 HAMETMMFTF 10 Unmodified _HAMETMMFTF_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.25927734375 2 623.258687 1244.50282 0.96763 0.00060308 -0.92882 -0.0005789 0.038808 2.4188E-05 623.2586258174467 97.026 0.30242 90.85 90.708 91.01 -6.1757 53 17 4 0 0 0 0.0044003 2 64383 64260;64383 100.37 71.961 1 61181000 18470 9996 12714 12942 21826;21827 21827 -0.1096492662345554 HAMETWEAFA 10 Unmodified _HAMETWEAFA_ 0 0 0 REV__nc|ENSG00000116729|Q5T9L3-3|WLS REV__nc|ENSG00000116729|Q5T9L3-3|WLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7615356445312 2 596.758223 1191.50189 0.69035 0.00041197 0.87365 0.00052135 1.564 0.00093332 597.2596805509888 72.582 0.29214 72.105 71.938 72.23 -0.4761 30 13 3 0 0 0 0.68719 1 39721 39721 4.3292 0 1 1771200 + 18471 19062 12715 12943 21828 21828 -0.08619681676509572 HANDQTVIF 9 Unmodified _HANDQTVIF_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7593994140625 2 522.759081 1043.50361 0.085768 4.4836E-05 0.24831 0.0001298 0.33407 0.00017464 522.759331810994 44.491 0.27143 44.491 44.358 44.629 0 31 13 3 0 0 0 0.020973 1 24178 24178 62.573 29.787 1 27654000 18472 4971 12716 12944 21829 21829 -0.016403045962533724 HANDQTVIF 9 Unmodified _HANDQTVIF_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7593994140625 2 522.759081 1043.50361 0.96643 0.00050521 -0.58429 -0.00030544 0.38214 0.00019977 522.7586712952473 49.279 0.35272 43.883 43.731 44.083 -5.3961 33 22 2 0 0 0 0.078314 1 30804 30804 38.176 21.233 1 34584000 18473 4971 12716 12944 21830 21830 -0.016403045962533724 HANERLRRQFA 11 Unmodified _HANERLRRQFA_ 0 0 0 nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2 nc|ENSG00000077522|P35609-2|ACTN2 nc|ENSG00000077522|P35609-2|ACTN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.3793334960938 2 699.379083 1396.74361 0.15411 0.00010778 1.8083 0.0012647 1.9624 0.0013725 699.3803311684503 82.6 0.64114 76.424 76.106 76.747 -6.1757 49 36 2 0 0 0 0.46131 1 54156 54156 18.373 2.224 1 15470000 18474 1221 12717 12945 21831 21831 0.06111109794642289 HANPNGLIL 9 Unmodified _HANPNGLIL_ 0 0 0 PGM3|p.K15N|1|0.17|ENSG00000013375|chr6:83190968-83190968|C/A|missense_variant PGM3|p.K15N|1|0.17|ENSG00000013375|chr6:83190968-83190968|C/A|missense_variant PGM3|p.K15N|1|0.17|ENSG00000013375|chr6:83190968-83190968|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7681884765625 2 474.766709 947.518865 NaN NaN NaN NaN NaN NaN NaN 3.2038 1 3.1914 2.6914 3.6914 -0.012334 0 0 0 0.85798 1 1625 1625 0.52476 0 1 18475 16685 12718 12946 21832 21832 0.043006069916373235 HANVVVYSY 9 Unmodified _HANVVVYSY_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2653198242188 2 526.263999 1050.51345 0.55082 0.00028988 -0.56713 -0.00029846 -0.01631 -8.5831E-06 526.2640501120686 38.157 0.18638 38.157 38.049 38.235 0 13 9 2 0 0 0 0.070838 1 20358 20358 39.957 17.221 1 8516400 18476 2250 12719 12947 21833 21833 -0.0097911659086094 HANVVVYSY 9 Unmodified _HANVVVYSY_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.263999 1050.51345 -0.084127 -4.4273E-05 0.517 0.00027208 0.43287 0.00022781 526.2643775651827 38.538 0.14863 38.251 38.134 38.283 -0.28687 0.04745 0.00033014 NaN 39.957 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1417700 18477 2250 12719 12947 -0.0097911659086094 HAPIMGSCEL 10 Unmodified _HAPIMGSCEL_ 0 0 0 REV__ENST00000391788.6_1_19:52905223-52909266:+|nuORF REV__ENST00000391788.6_1_19:52905223-52909266:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.244140625 2 529.243895 1056.47324 NaN NaN NaN NaN NaN NaN NaN 64.467 1 63.982 63.482 64.482 -0.48512 0 0 0 0.81521 1 35172 35172 11.64 2.2572 1 + 18478 26375 12720 12948 21834 21834 -0.05274122577270646 HAPLNVGW 8 Unmodified _HAPLNVGW_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3;REV__ENSG00000144028|ENST00000323853|SNRNP200 REV__ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2350158691406 2 447.235045 892.455536 0.69784 0.0003121 0.25749 0.00011516 0.95533 0.00042726 447.2349316353247 79.171 0.53212 79.226 78.936 79.468 0.054977 49 20 3 0 0 0 0.80624 2 43680 43680;43787 2.8892 0.31174 1 20295000 + 18479 18801;20687 12721 12949 21835;21836 21835 0.005006662743767265 HAPREGPFT 9 Unmodified _HAPREGPFT_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2497253417969 2 506.253966 1010.49338 NaN NaN NaN NaN NaN NaN NaN 29.891 1 29.921 29.421 30.421 0.030106 0 0 0 0.7243 1 15619 15619 8.5933 0.68312 1 18480 7607 12722 12950 21837 21837 -0.011448675308201928 HAQCWGQE 8 Unmodified _HAQCWGQE_ 0 0 0 ENST00000372133.7_1_6:43639117-43639489:-|nuORF ENST00000372133.7_1_6:43639117-43639489:-|nuORF ENST00000372133.7_1_6:43639117-43639489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.6956176757812 2 479.695426 957.3763 0.4324 0.00020742 1.4778 0.00070891 1.9102 0.00091633 479.69583634112826 39.195 0.37254 39.195 38.99 39.362 0 31 17 2 0 0 0 0.80232 1 20942 20942 5.2307 5.2307 1 2254400 18481 12374 12723 12951 21838 21838 -0.10409348742075508 HAQDYVLTY 9 Unmodified _HAQDYVLTY_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.267578125 2 555.266739 1108.51892 0.23204 0.00012885 -0.39005 -0.00021658 -0.15801 -8.7737E-05 555.2667458766081 44.299 0.30535 44.299 44.131 44.437 0 29 15 3 0 0 0 0.0082353 1 24063 24063 96.111 43.843 1 31417000 18482 4635 12724 12952 21839 21839 -0.030994377990509747 HAQDYVLTY 9 Unmodified _HAQDYVLTY_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2657470703125 2 555.266739 1108.51892 NaN NaN NaN NaN NaN NaN NaN 44.633 1 44.317 43.817 44.817 -0.31585 0 0 0 0.43483 1 23819 23819 18.146 7.963 1 18483 4635 12724 12952 21840 21840 -0.030994377990509747 HAQKEHLYF 9 Unmodified _HAQKEHLYF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.532470703125 3 391.533091 1171.57744 -0.65228 -0.00025539 0.28323 0.0001109 -0.36905 -0.0001445 391.5331292083969 27.074 0.28451 27.074 26.93 27.215 0 41 13 4 0 0 0 0.12424 1 13905 13905 28.495 19.111 1 14713000 18484 2113 12725 12953 21841 21841 -0.0014833643390375073 HAQKEHLYF 9 Unmodified _HAQKEHLYF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5342102050781 3 391.533091 1171.57744 0.9949 0.00038954 0.51058 0.00019991 1.5055 0.00058944 391.5330064096241 29.016 0.30017 25.715 25.547 25.848 -3.3016 27 17 2 0 0 0 0.018301 1 16240 16240 51.415 33.973 1 67010000 18485 2113 12725 12953 21842 21842 -0.0014833643390375073 HAQLTRIFF 9 Unmodified _HAQLTRIFF_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8143310546875 2 566.816733 1131.61891 NaN NaN NaN NaN NaN NaN NaN 27.982 1 27.982 27.482 28.482 0 0 0 0 0.67877 1 14434 14434 10.074 0 1 + 18486 17684 12726 12954 21843 21843 0.05836844325403945 HAQQRWQRF 9 Unmodified _HAQQRWQRF_ 0 0 0 REV__ENST00000463436.1_1_22:32007754-32008107:+|nuORF REV__ENST00000463436.1_1_22:32007754-32008107:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 419.5508728027344 3 419.551367 1255.63227 NaN NaN NaN NaN NaN NaN NaN 17.742 1 15.155 14.655 15.655 -2.5866 0 0 0 0.82283 1 9304 9304 4.897 0.36815 1 + 18487 27351 12727 12955 21844 21844 0.014680951573609491 HARAAAAP 8 Unmodified _HARAAAAP_ 0 0 0 REV__ENST00000483069.5_1_3:53003220-53080646:-|nuORF REV__ENST00000483069.5_1_3:53003220-53080646:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4862670898438 2 382.711737 763.40892 0.016599 6.3525E-06 -3.0689 -0.0011745 -3.0523 -0.0011682 382.71038920327754 64.265 0.25943 64.265 64.168 64.427 0 14 11 2 0 0 0 8.7369 1 35827 35827 0.79363 0 1 514410 + 18488 27734 12728 12956 21845 21845 0.01775226443066913 HARAAAAP 8 Unmodified _HARAAAAP_ 0 0 0 REV__ENST00000483069.5_1_3:53003220-53080646:-|nuORF REV__ENST00000483069.5_1_3:53003220-53080646:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 382.711737 763.40892 0.34842 0.00013335 -3.6011 -0.0013782 -3.2527 -0.0012448 382.71029543492955 65.1 0.34542 64.616 64.403 64.749 -0.48428 0.17545 -6.6237E-05 NaN 0.79363 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1237900 + 18489 27734 12728 12956 0.01775226443066913 HARAAPPR 8 Unmodified _HARAAPPR_ 0 0 0 REV__ENST00000341846.9_1_11:120008080-120008518:-|nuORF REV__ENST00000341846.9_1_11:120008080-120008518:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.251708984375 2 438.25156 874.488568 NaN NaN NaN NaN NaN NaN NaN 30.031 1 26.534 26.034 27.034 -3.497 0 0 0 0.63034 1 16922 16922 32.117 5.7757 1 + 18490 25711 12729 12957 21846 21846 0.046302931170771444 HARARPDMF 9 Unmodified _HARARPDMF_ 0 0 0 ENSG00000054938|ENST00000376332|CHRDL2;nc|ENSG00000054938|Q6WN34-2|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 ENSG00000054938|ENST00000376332|CHRDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5190124511719 3 367.518787 1099.53453 0.73527 0.00027022 1.9185 0.00070509 2.6538 0.00097532 367.51905844454075 41.456 0.42447 36.848 36.671 37.095 -4.6079 35 27 2 0 0 0 0.54213 1 24819 24819 4.897 2.3985 1 16219000 18491 767 12730 12958 21847 21847 -0.011254297630102883 HARCFILL 8 Unmodified _HARCFILL_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7748718261719 2 486.776022 971.537492 NaN NaN NaN NaN NaN NaN NaN 95.942 1 95.601 95.101 96.101 -0.34101 0 0 0 0.97444 1 52400 52400 2.3027 0 1 18492 7267 12731 12959 21848 21848 0.05058445361817121 HARLQQLL 8 Unmodified _HARLQQLL_ 0 0 0 REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.7383422851562 2 489.795801 977.577048 0.26897 0.00013174 -0.271 -0.00013273 -0.0020257 -9.9217E-07 489.79581859009573 16.996 0.19276 14.409 14.304 14.496 -2.5866 43 34 2 0 0 0 8.7369 1 8808 8808 8.5933 8.5933 1 2831400 + 18493 29548 12732 12960 21849 21849 0.08736288636896461 HARQHRLVSSL 11 Unmodified _HARQHRLVSSL_ 0 0 0 REV__ENSG00000261221|ENST00000568956|ZNF865 REV__ENSG00000261221|ENST00000568956|ZNF865 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3721923828125 2 652.370727 1302.7269 1.009 0.00065824 1.839 0.0011997 2.848 0.0018579 652.371937696473 99.445 0.10485 93.269 93.201 93.306 -6.1757 10 6 2 0 0 0 0.063019 1 66255 66255 43.772 8.8403 1 24518000 + 18494 24581 12733 12961 21850 21850 0.08764608908700211 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2860107421875 2 498.285266 994.555979 0.35157 0.00017518 -0.72081 -0.00035917 -0.36924 -0.00018399 498.28489082020945 39.498 0.72832 39.498 39.282 40.01 0 98 35 5 0 0 0 0.0087923 2 21091 21091;21199 103.42 57.72 1 289240000 18495 7097 12734 12962 21851;21852 21851 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.28515625 2 498.285266 994.555979 -0.12424 -6.1909E-05 0.2426 0.00012088 0.11836 5.8976E-05 498.2853671990106 39.648 0.47402 39.351 39.175 39.649 -0.29716 58 22 4 0 0 0 0.0081887 2 20976 20869;20976 93.166 53.216 1 26957000 18496 7097 12734 12962 21853;21854 21854 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2866516113281 2 498.285266 994.555979 0.35002 0.00017441 0.16438 8.191E-05 0.5144 0.00025632 498.2855590118206 39.32 0.2564 39.332 39.152 39.408 0.011456 22 11 3 0 0 0 0.025842 1 20911 20911 57.722 24.936 1 3961000 18497 7097 12734 12962 21855 21855 0.058482785373598745 HASDRIIAL 9 Unmodified _HASDRIIAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2862854003906 2 498.285266 994.555979 0.78779 0.00039255 -0.060812 -3.0302E-05 0.72698 0.00036225 498.28526968021185 43.45 0.70688 38.685 38.419 39.126 -4.7648 142 46 4 0 0 0 0.0087923 3 26253 26253;26386;26514 103.42 47.242 1 634070000 18498 7097 12734 12962 21856;21857;21858 21856 0.058482785373598745 HASDVLENAF 10 Unmodified _HASDVLENAF_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7623291015625 2 551.76182 1101.50909 0.81562 0.00045003 -0.28485 -0.00015717 0.53078 0.00029286 551.7618271863636 49.617 0.34702 49.617 49.465 49.812 0 49 15 4 0 0 0 0.024115 2 27396 27281;27396 71.922 57.084 1 46628000 18499 2963 12735 12963 21859;21860 21860 -0.03760625804443407 HASDVLENAF 10 Unmodified _HASDVLENAF_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2327270507812 2 551.76182 1101.50909 0.90546 0.0004996 -0.99165 -0.00054716 -0.086189 -4.7556E-05 551.7620171096586 49.979 0.17924 49.587 49.471 49.65 -0.3923 14 8 2 0 0 0 0.22811 1 26851 26851 14.838 10.894 1 1825700 18500 2963 12735 12963 21861 21861 -0.03760625804443407 HASDVLENAF 10 Unmodified _HASDVLENAF_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7619018554688 2 551.76182 1101.50909 0.18037 9.9522E-05 0.44731 0.00024681 0.62768 0.00034633 551.7620916696965 56.123 0.48271 50.146 49.837 50.32 -5.9769 59 28 3 0 0 0 0.0032765 2 35657 35657;35790 103.75 59.89 1 74279000 18501 2963 12735 12963 21862;21863 21862 -0.03760625804443407 HASDVLLNL 9 Unmodified _HASDVLLNL_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2716369628906 2 491.271824 980.529095 0.087364 4.2919E-05 -0.12668 -6.2233E-05 -0.039313 -1.9314E-05 491.2717353403088 61.836 0.42388 61.836 61.62 62.044 0 58 18 4 0 0 0 0.00856 2 34526 34416;34526 100.37 39.014 1 29450000 18502 3009 12736 12964 21864;21865 21865 0.03805169926170038 HASDVLLNL 9 Unmodified _HASDVLLNL_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2724914550781 2 491.271824 980.529095 0.83077 0.00040814 0.16664 8.1864E-05 0.99741 0.00049 491.2719372174776 62.125 0.34058 61.638 61.469 61.809 -0.48764 43 15 4 0 0 0 0.013323 2 33795 33795;33902 71.134 35.089 1 10628000 18503 3009 12736 12964 21866;21867 21866 0.03805169926170038 HASDVLLNL 9 Unmodified _HASDVLLNL_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2720031738281 2 491.271824 980.529095 0.60632 0.00029787 -0.0044419 -2.1822E-06 0.60188 0.00029569 491.2718010158512 67.639 0.4538 61.463 61.236 61.69 -6.1757 47 25 2 0 0 0 0.0095811 2 44127 43996;44127 81.613 43.639 1 63208000 18504 3009 12736 12964 21868;21869 21869 0.03805169926170038 HASGHLYLY 9 Unmodified _HASGHLYLY_ 0 0 0 ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7628173828125 2 530.764166 1059.51378 NaN NaN NaN NaN NaN NaN NaN 34.94 1 34.94 34.44 35.44 0 0 0 0 0.15618 1 18445 18445 36.044 9.1605 1 18505 9413 12737 12965 21870 21870 -0.01359696871008964 HASGHLYLY 9 Unmodified _HASGHLYLY_ 0 0 0 ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.76513671875 2 530.764166 1059.51378 -0.39554 -0.00020994 1.9571 0.0010387 1.5615 0.00082881 530.7643172102631 35.052 0.38495 34.829 34.553 34.938 -0.2224 44 16 4 0 0 0 0.052168 1 18328 18328 44.407 29.825 1 4626700 18506 9413 12737 12965 21871 21871 -0.01359696871008964 HASGHLYLY 9 Unmodified _HASGHLYLY_ 0 0 0 ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7647705078125 2 530.764166 1059.51378 0.43514 0.00023096 -0.2477 -0.00013147 0.18743 9.9483E-05 530.7641441883719 38.518 0.32465 34.149 33.948 34.273 -4.3689 35 20 2 0 0 0 0.0090851 1 22659 22659 85.357 64.486 1 18885000 18507 9413 12737 12965 21872 21872 -0.01359696871008964 HASIGQGF 8 Unmodified _HASIGQGF_ 0 0 0 ENST00000557927.1_1_15:89172339-89173522:+|nuORF ENST00000557927.1_1_15:89172339-89173522:+|nuORF ENST00000557927.1_1_15:89172339-89173522:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.7035217285156 2 408.703577 815.392602 0.69548 0.00028425 -0.41825 -0.00017094 0.27724 0.00011331 408.70337967876725 47.151 0.23376 46.806 46.692 46.926 -0.34529 26 11 3 0 0 0 0.77907 1 25258 25258 10.183 3.8293 1 8053600 18508 15269 12738 12966 21873 21873 -0.02247899513668017 HASIGQGF 8 Unmodified _HASIGQGF_ 0 0 0 ENST00000557927.1_1_15:89172339-89173522:+|nuORF ENST00000557927.1_1_15:89172339-89173522:+|nuORF ENST00000557927.1_1_15:89172339-89173522:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7034912109375 2 408.703577 815.392602 0.58968 0.000241 -0.091291 -3.7311E-05 0.49839 0.00020369 408.70345174425506 51.975 0.42325 46.24 46.107 46.53 -5.7345 43 28 2 0 0 0 0.74163 1 32757 32757 13.508 4.1604 1 62717000 18509 15269 12738 12966 21874 21874 -0.02247899513668017 HASIVEVLL 9 Unmodified _HASIVEVLL_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7933349609375 2 490.792392 979.570232 0.87281 0.00042837 0.33921 0.00016648 1.212 0.00059485 490.7926458742066 74.109 0.31974 73.633 73.448 73.768 -0.47588 21 13 2 0 0 0 0.06187 1 40552 40552 42.095 11.87 1 1044900 18510 2174 12739 12967 21875 21875 0.07962930965663872 HASMCSYIVI 10 Unmodified _HASMCSYIVI_ 0 0 0 ENST00000380680.4_1_13:30424065-30424257:-|nuORF ENST00000380680.4_1_13:30424065-30424257:-|nuORF ENST00000380680.4_1_13:30424065-30424257:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2659912109375 2 562.26737 1122.52019 1.2554 0.00070589 -3.4391 -0.0019337 -2.1836 -0.0012278 562.2651788488298 99.428 0.10179 93.252 93.188 93.29 -6.1757 11 6 2 0 0 0 0.5905 1 66200 66200 11.64 0.81637 1 33462000 18511 12603 12740 12968 21876 21876 -0.03617263026171713 HASPEDIKKAY 11 Unmodified _HASPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2183837890625 3 420.21906 1257.63535 -0.52215 -0.00021942 0.2087 8.7702E-05 -0.31345 -0.00013172 420.2191265079263 19.466 0.21732 19.466 19.34 19.558 0 46 21 3 0 0 0 0.46197 1 9713 9713 18.34 16.597 1 1507000 18512 2387 12741 12969 21877 21877 0.01683880700852569 HASPEDIKKAY 11 Unmodified _HASPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.219970703125 3 420.21906 1257.63535 1.5183 0.00063801 0.53839 0.00022624 2.0567 0.00086425 420.2191459274712 21.636 0.32673 18.901 18.745 19.072 -2.7348 36 19 2 0 0 0 0.0020944 1 11579 11579 80.24 74.837 1 5420900 18513 2387 12741 12969 21878 21878 0.01683880700852569 HASQAYFESM 10 Unmodified _HASQAYFESM_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7481689453125 2 585.747856 1169.48116 0.39652 0.00023226 0.50706 0.00029701 0.90358 0.00052927 585.7483056819227 30.698 0.48199 30.595 30.285 30.767 -0.10269 60 18 4 0 0 0 0.48505 1 15945 15945 17.113 6.289 1 24799000 18514 9628 12742 12970 21879 21879 -0.09680272056175454 HASRHPRISV 10 Unmodified _HASRHPRISV_ 0 0 0 ENSG00000128594|ENST00000249363|LRRC4 ENSG00000128594|ENST00000249363|LRRC4 ENSG00000128594|ENST00000249363|LRRC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2199096679688 3 387.219617 1158.63702 1.0545 0.00040834 -0.40558 -0.00015705 0.64896 0.00025129 387.21948681328365 18.293 0.31633 15.672 15.548 15.864 -2.6215 46 25 3 0 0 0 0.54083 1 9602 9602 14.218 0 1 7160600 18515 4074 12743 12971 21880 21880 0.06404979300123159 HASRMTAP 8 Unmodified _HASRMTAP_ 0 0 0 ENST00000429941.6_1_19:16338406-16338960:+|nuORF ENST00000429941.6_1_19:16338406-16338960:+|nuORF ENST00000429941.6_1_19:16338406-16338960:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 435.7152404785156 2 435.716162 869.41777 NaN NaN NaN NaN NaN NaN NaN 15.586 1 13.059 12.559 13.559 -2.5273 0 0 0 0.93587 1 8010 8010 13.508 0 1 18516 13226 12744 12972 21881 21881 -0.022161679827490843 HASRSSQEFLQ 11 Unmodified _HASRSSQEFLQ_ 0 0 0 REV__ENSG00000145982|ENST00000274680|FARS2 REV__ENSG00000145982|ENST00000274680|FARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.5458984375 3 430.545947 1288.61601 0.16198 6.9741E-05 2.8927 0.0012455 3.0547 0.0013152 430.54595288177046 16.921 0.19608 16.926 16.805 17.001 0.0050564 60 21 4 0 0 0 0.70069 1 8530 8530 1.9275 0.71267 1 9018100 + 18517 20803 12745 12973 21882 21882 -0.016750755900375225 HASSSIVSL 9 Unmodified _HASSSIVSL_ 0 0 0 nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7425842285156 2 450.742899 899.471246 -0.21719 -9.7895E-05 0.22487 0.00010136 0.0076868 3.4648E-06 450.74290426990143 41.129 0.19566 41.129 41.045 41.241 0 17 9 2 0 0 0 0.0083087 1 22172 22172 97.075 54.98 1 3200000 18518 10857 12746 12974 21883 21883 0.017489080007635494 HASSSIVSL 9 Unmodified _HASSSIVSL_ 0 0 0 nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7428588867188 2 450.742899 899.471246 0.77639 0.00034995 -0.19724 -8.8906E-05 0.57914 0.00026104 450.74299787775016 46.075 0.37741 41.121 40.848 41.226 -4.9549 40 24 2 0 0 0 0.0090851 1 28388 28388 85.357 31.524 1 11069000 18519 10857 12746 12974 21884 21884 0.017489080007635494 HASVAMRAM 9 Unmodified _HASVAMRAM_ 0 0 0 ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3;ENST00000491240.5_1_X:48433911-48434199:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2394409179688 2 487.238947 972.46334 NaN NaN NaN NaN NaN NaN NaN 24.292 1 21.465 20.965 21.965 -2.8273 0 0 0 0.22437 1 13214 13214 29.082 13.234 1 18520 2037 12747 12975 21885 21885 -0.02399265792018923 HASVCMPEFY 10 Unmodified _HASVCMPEFY_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|343|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|343|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1684265136719 3 395.168544 1182.4838 NaN NaN NaN NaN NaN NaN NaN 70.405 1 70.405 69.905 70.905 0 0 0 0 0.9997 1 39229 39229 0.69767 0 1 + 18521 29430 12748 12976 21886 21886 -0.10014139922873255 HATACAVF 8 Unmodified _HATACAVF_ 0 0 0 REV__ENSG00000071203|ENST00000016913|MS4A12 REV__ENSG00000071203|ENST00000016913|MS4A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.1930541992188 2 410.194531 818.374509 0.12654 5.1906E-05 -3.4052 -0.0013968 -3.2787 -0.0013449 410.1933098916284 39.909 0.24265 39.611 39.471 39.713 -0.29716 19 11 2 0 0 0 0.70131 1 21047 21047 17.087 5.9721 1 2058300 + 18522 17492 12749 12977 21887 21887 -0.041943577600363824 HATAFILLQL 10 Unmodified _HATAFILLQL_ 0 0 0 REV__nc|ENSG855|P10266|ERVK-10_pol REV__nc|ENSG855|P10266|ERVK-10_pol MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.8315124511719 3 376.225486 1125.65463 1.5485 0.0005826 3.3206 0.0012493 4.8692 0.0018319 376.22643805806035 35.655 0.29654 31.462 31.382 31.678 -4.1928 44 18 3 0 0 0 0.2342 1 20866 20866 10.151 4.8537 1 26946000 + 18523 30044 12750 12978 21888 21888 0.09682881782418917 HATEELETY 9 Unmodified _HATEELETY_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;CTAGE1|p.R402Q|1|0.05|ENSG00000212710|chr18:22416607-22416607|C/T|missense_variant;ENSG00000212710|ENST00000391403|CTAGE1;ENSG00000236761|ENST00000314099|CTAGE9 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7450561523438 2 546.745836 1091.47712 -0.56323 -0.00030794 -0.77885 -0.00042583 -1.3421 -0.00073378 546.7457086849363 28.116 0.23037 28.116 28.021 28.251 0 27 13 3 0 0 0 0.013472 1 14495 14495 70.716 47.567 1 3571800 18524 6059 12751 12979 21889 21889 -0.06496038278214655 HATEELKEF 9 Unmodified _HATEELKEF_ 0 0 0 ENSG00000247596|ENST00000305533|TWF2 ENSG00000247596|ENST00000305533|TWF2 ENSG00000247596|ENST00000305533|TWF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.27197265625 2 552.272021 1102.52949 NaN NaN NaN NaN NaN NaN NaN 28.646 1 28.646 28.146 29.146 0 0 0 0 0.074615 1 14806 14806 49.933 15.531 1 18525 10738 12752 12980 21890 21890 -0.017674551446361875 HATFNDPVM 9 Oxidation (M) _HATFNDPVM(Oxidation (M))_ HATFNDPVM(1) HATFNDPVM(96) 0 0 1 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.229736328125 2 524.231842 1046.44913 -0.18046 -9.4603E-05 -1.3863 -0.00072675 -1.5668 -0.00082135 524.2308956281115 29.864 0.27298 29.864 29.742 30.015 0 26 15 2 0 0 0 0.0082485 1 15475 15475 96.285 69.401 1 7079900 18526 2999 12753 12981 21891 21891 517 -0.07223639739322607 HATFNDPVM 9 Oxidation (M) _HATFNDPVM(Oxidation (M))_ HATFNDPVM(1) HATFNDPVM(100) 0 0 1 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2319946289062 2 524.231842 1046.44913 1.2385 0.00064926 -0.088688 -4.6493E-05 1.1498 0.00060277 524.23170703967 34.137 0.36008 30.152 29.946 30.306 -3.9853 32 19 2 0 0 0 0.0088174 1 19612 19612 103.75 76.865 1 14997000 18527 2999 12753 12981 21892 21892 517 -0.07223639739322607 HATFNDPVM 9 Unmodified _HATFNDPVM_ 0 0 0 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2354125976562 2 516.234384 1030.45422 0.52056 0.00026873 0.75149 0.00038795 1.2721 0.00065668 516.2345827915195 44.869 0.28376 40.017 39.905 40.188 -4.852 31 18 2 0 0 0 0.028475 1 27417 27417 56.177 14.337 1 8789300 18528 2999 12753 12982 21893 21893 -0.05979335876713776 HATIVSEKL 9 Unmodified _HATIVSEKL_ 0 0 0 ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF ENSG00000144063|ENST00000272462|MALL ENSG00000144063|ENST00000272462|MALL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2882080078125 2 499.287474 996.560395 -0.51426 -0.00025676 0.48198 0.00024065 -0.032274 -1.6114E-05 499.2878452771137 28.309 0.26902 28.309 28.169 28.438 0 41 14 4 0 0 0 2.2236E-06 1 14582 14582 157.8 79.067 1 30759000 18529 5584 12754 12983 21894 21894 0.061977429602734446 HATIVSEKL 9 Unmodified _HATIVSEKL_ 0 0 0 ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF ENSG00000144063|ENST00000272462|MALL ENSG00000144063|ENST00000272462|MALL MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.287353515625 2 499.287474 996.560395 0.67205 0.00033555 -0.51265 -0.00025596 0.1594 7.9587E-05 499.28718095576966 31.671 0.51721 27.975 27.776 28.293 -3.6958 62 27 3 0 0 0 0.0014462 2 17895 17895;18014 136.39 80.215 1 139050000 18530 5584 12754 12983 21895;21896 21895 0.061977429602734446 HATLADLVEY 10 Unmodified _HATLADLVEY_ 0 0 0 ENSG00000104611|ENST00000265807|SH2D4A;nc|ENSG00000104611|Q9H788-2|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2880249023438 2 566.287671 1130.56079 0.37397 0.00021178 0.69588 0.00039407 1.0699 0.00060584 566.2879870749894 61.379 0.38218 61.379 61.215 61.597 0 47 17 4 0 0 0 0.039874 2 34271 34177;34271 74.929 56.783 1 12289000 18531 2217 12755 12984 21897;21898 21898 0.0007311788949664333 HATLADLVEY 10 Unmodified _HATLADLVEY_ 0 0 0 ENSG00000104611|ENST00000265807|SH2D4A;nc|ENSG00000104611|Q9H788-2|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.288330078125 2 566.287671 1130.56079 0.53612 0.0003036 0.027397 1.5515E-05 0.56352 0.00031911 566.2876423345332 61.876 0.30726 61.388 61.222 61.529 -0.48764 40 14 3 0 0 0 0.021614 2 33666 33666;33769 88.904 68.45 1 11452000 18532 2217 12755 12984 21899;21900 21899 0.0007311788949664333 HATLTHSVF 9 Unmodified _HATLTHSVF_ 0 0 0 ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2 ENSG00000136478|ENST00000584379|TEX2 ENSG00000136478|ENST00000584379|TEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7645874023438 2 506.764166 1011.51378 -0.23469 -0.00011893 0.55253 0.00028 0.31784 0.00016107 506.764491962095 31.659 0.215 31.53 31.408 31.623 -0.12915 17 8 3 0 0 0 0.042911 1 16476 16476 48.346 31.404 1 2098700 18533 4824 12756 12985 21901 21901 0.008483031289983956 HATLTHSVF 9 Unmodified _HATLTHSVF_ 0 0 0 ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2 ENSG00000136478|ENST00000584379|TEX2 ENSG00000136478|ENST00000584379|TEX2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 506.764166 1011.51378 0.5465 0.00027695 -0.62134 -0.00031487 -0.074837 -3.7925E-05 506.76377074059974 35.351 0.37106 31.256 31.12 31.491 -4.0951 -0.13699 -0.00044012 NaN 48.346 38 22 2 NaN NaN NaN NaN 0 NaN NaN 0 9449900 18534 4824 12756 12985 0.008483031289983956 HATNVGIMF 9 Oxidation (M) _HATNVGIM(Oxidation (M))F_ HATNVGIM(1)F HATNVGIM(82)F 0 0 1 ENST00000558767.5_1_15:80445384-80454703:+|nuORF;ENSG00000103876|ENST00000561421|FAH;ENST00000537726.5_1_15:80452843-80454703:+|nuORF;nc|ENSG00000103876|P16930-2|FAH ENST00000558767.5_1_15:80445384-80454703:+|nuORF ENST00000558767.5_1_15:80445384-80454703:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2452392578125 2 503.244752 1004.47495 0.25182 0.00012673 0.48322 0.00024318 0.73504 0.0003699 503.24490870880476 47.099 0.29138 46.763 46.604 46.895 -0.33664 33 14 3 0 0 0 0.009483 1 25210 25210 81.89 45.846 1 7254200 18535 2164 12757 12986 21902 21902 375 -0.027107454970064282 HATPLPLTSL 10 Unmodified _HATPLPLTSL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.30517578125 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 63.48 1 62.994 62.494 63.494 -0.48617 0 0 0 0.31648 1 34620 34620 36.127 16.87 1 18536 5669 12758 12987 21903 21903 0.06934315994362805 HATPLPVTGL 10 Unmodified _HATPLPVTGL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2891235351562 2 503.290017 1004.56548 -0.15252 -7.6763E-05 -0.32529 -0.00016372 -0.47781 -0.00024048 503.28968929238516 55.102 0.18421 54.624 54.528 54.712 -0.47798 14 8 2 0 0 0 0.44373 1 29913 29913 19.257 9.9096 1 943660 18537 5669 12759 12988 21904 21904 0.06338046822895649 HATSLPVTSL 10 Unmodified _HATSLPVTSL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2866821289062 2 513.284931 1024.55531 0.52055 0.00026719 1.123 0.0005764 1.6435 0.00084358 513.2855066552462 49.386 0.19585 48.994 48.861 49.057 -0.3923 15 9 2 0 0 0 0.33553 1 26568 26568 25.399 6.0374 1 2273600 18538 5669 12760 12989 21905 21905 0.04401439097682669 HATSPLEEF 9 Unmodified _HATSPLEEF_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;ENST00000482171.5_1_2:130914007-130915206:-|nuORF;ENST00000415574.6_1_2:132263967-132275411:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4;ENST00000415574.6_1_2:132263967-132275411:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7453002929688 2 515.745639 1029.47673 0.13741 7.0871E-05 -0.45535 -0.00023485 -0.31794 -0.00016397 515.7454384214005 49.011 0.54054 49.011 48.695 49.236 0 56 25 3 0 0 0 0.010877 2 26931 26931;27054 77.984 45.679 1 9489300 18539 4845;13023 12761 12990 21906;21907 21906 -0.036834132074318404 HATTALLHY 9 Unmodified _HATTALLHY_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7728271484375 2 513.771991 1025.52943 -0.4986 -0.00025617 0.3671 0.0001886 -0.13151 -6.7566E-05 513.771926100371 34.127 0.26054 34.127 34.009 34.269 0 25 13 2 0 0 0 0.0086179 1 17924 17924 89.427 57.121 1 12928000 18540 6734 12762 12991 21908 21908 0.017685896460534423 HATTALLHY 9 Unmodified _HATTALLHY_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7740478515625 2 513.771991 1025.52943 -0.33697 -0.00017313 0.7488 0.00038471 0.41183 0.00021159 513.7723470465329 34.297 0.28261 34.106 33.944 34.226 -0.19131 31 10 4 0 0 0 0.0048787 2 17869 17869;17976 117.6 83.496 1 10691000 18541 6734 12762 12991 21909;21910 21909 0.017685896460534423 HATTALLHY 9 Unmodified _HATTALLHY_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.771991 1025.52943 0.35644 0.00018313 1.6873 0.00086691 2.0438 0.00105 514.273980140935 33.954 0.17583 33.983 33.881 34.057 0.028934 -0.089228 0.00095281 NaN 117.6 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1059400 18542 6734 12762 12991 0.017685896460534423 HATTIQPEF 9 Unmodified _HATTIQPEF_ 0 0 0 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2615966796875 2 522.261456 1042.50836 0.088955 4.6458E-05 -0.96189 -0.00050236 -0.87293 -0.0004559 522.2606609517438 40.599 0.30761 40.599 40.432 40.739 0 38 16 3 0 0 0 0.015445 1 21777 21777 68.081 46.334 1 9504800 18543 7980 12763 12992 21911 21911 -0.011194204534831442 HATTIQPEF 9 Unmodified _HATTIQPEF_ 0 0 0 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.262939453125 2 522.261456 1042.50836 0.81978 0.00042814 0.4678 0.00024432 1.2876 0.00067246 522.2616809748363 45.651 0.35396 40.696 40.524 40.878 -4.9549 39 23 2 0 0 0 0.015445 1 28023 28023 68.081 39.594 1 17884000 18544 7980 12763 12992 21912 21912 -0.011194204534831442 HATVATENEVF 11 Unmodified _HATVATENEVF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2947998046875 2 609.293485 1216.57242 0.017036 1.038E-05 0.57572 0.00035078 0.59276 0.00036116 609.2939360529946 37.768 0.34262 37.768 37.604 37.947 0 58 16 5 0 0 0 3.4728E-11 2 20072 20072;20179 125.53 91.127 1 38086000 18545 7019 12764 12993 21913;21914 21913 -0.02720685087183483 HATVATENEVF 11 Unmodified _HATVATENEVF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2908325195312 2 609.293485 1216.57242 0.67805 0.00041313 0.27809 0.00016944 0.95613 0.00058257 609.2935726997804 42.913 0.41554 38.229 38.041 38.457 -4.6846 69 26 4 0 0 0 1.3287E-06 2 25900 25900;26043 103.42 70.674 1 50574000 18546 7019 12764 12993 21915;21916 21915 -0.02720685087183483 HAVAALSGF 9 Unmodified _HAVAALSGF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7351379394531 2 436.734877 871.455202 0.62881 0.00027462 -1.5233 -0.00066527 -0.89448 -0.00039065 436.73434803504813 47.015 0.25081 46.678 46.524 46.775 -0.33664 20 12 2 0 0 0 0.040472 1 25195 25195 49.669 23.328 1 3065100 18547 3388 12765 12994 21917 21917 0.014332465545066952 HAVAVTESY 9 Unmodified _HAVAVTESY_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7396240234375 2 488.740357 975.46616 NaN NaN NaN NaN NaN NaN NaN 26.163 1 26.163 25.663 26.663 0 0 0 0 0.029345 1 13440 13440 67.035 43.887 1 18548 8757 12766 12995 21918 21918 -0.022553958618573233 HAVDVDSGNSY 11 Unmodified _HAVDVDSGNSY_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1 nc|ENSG00000141503|Q8N4C8-5|MINK1 nc|ENSG00000141503|Q8N4C8-5|MINK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.250732421875 2 582.251817 1162.48908 -0.25111 -0.00014621 1.013 0.00058985 0.76194 0.00044364 582.2522672376775 22.096 0.27013 22.096 21.954 22.224 0 36 18 3 0 0 0 0.028752 1 11194 11194 55.503 41.097 1 1568100 18549 5339 12767 12996 21919 21919 -0.08566421535033442 HAVDVDSGNSY 11 Unmodified _HAVDVDSGNSY_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1 nc|ENSG00000141503|Q8N4C8-5|MINK1 nc|ENSG00000141503|Q8N4C8-5|MINK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.25146484375 2 582.251817 1162.48908 -0.19704 -0.00011473 -0.73784 -0.00042961 -0.93488 -0.00054433 582.2511968656198 25.645 0.23098 22.694 22.557 22.788 -2.9511 20 12 2 0 0 0 0.006372 1 14022 14022 72.968 44.481 1 5368200 18550 5339 12767 12996 21920 21920 -0.08566421535033442 HAVDVDSGSVY 11 Unmodified _HAVDVDSGSVY_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2659301757812 2 574.76456 1147.51457 -0.29404 -0.000169 0.31119 0.00017886 0.017157 9.8615E-06 574.7649397892562 30.638 0.30789 30.638 30.463 30.771 0 40 14 4 0 0 0 0.0069872 2 15887 15887;15989 71.922 56.075 1 8922000 18551 1049 12768 12997 21921;21922 21921 -0.053289470125946536 HAVDVDSGSVY 11 Unmodified _HAVDVDSGSVY_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.765380859375 2 574.76456 1147.51457 1.1035 0.00063427 1.5412 0.00088584 2.6448 0.0015201 574.764467898511 35.718 0.39338 31.525 31.301 31.694 -4.1928 57 24 3 0 0 0 2.9767E-06 2 20674 20674;20822 99.799 81.653 1 25824000 18552 1049 12768 12997 21923;21924 21923 -0.053289470125946536 HAVEISAVH 9 Unmodified _HAVEISAVH_ 0 0 0 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1;nc|ENSG00000168101|Q9BRJ7-2|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7552185058594 2 481.756341 961.498129 NaN NaN NaN NaN NaN NaN NaN 22.164 1 22.164 21.664 22.664 0 0 0 0 0.7243 1 11264 11264 8.5933 2.8329 1 18553 7719;16368 12769 12998 21925 21925 0.015840166119460264 HAVETVVNM 9 Oxidation (M) _HAVETVVNM(Oxidation (M))_ HAVETVVNM(1) HAVETVVNM(47) 0 0 1 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2479553222656 2 508.247492 1014.48043 -0.072944 -3.7074E-05 -0.64791 -0.0003293 -0.72085 -0.00036637 508.2471941163997 21.66 0.21918 21.66 21.527 21.746 0 50 31 2 0 0 0 0.045537 2 11014 10913;11014 46.921 34.389 1 1465800 18554 1489 12770 12999 21926;21927 21927 255 -0.026230667052118406 HAVETVVNM 9 Oxidation (M) _HAVETVVNM(Oxidation (M))_ HAVETVVNM(1) HAVETVVNM(55) 0 0 1 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7294006347656 2 508.247492 1014.48043 -0.12046 -6.1226E-05 -0.32456 -0.00016496 -0.44502 -0.00022618 508.2469411296897 25.237 0.22426 22.354 22.24 22.464 -2.8831 19 17 2 0 0 0 0.047927 1 13822 13822 54.774 38.926 1 4196500 18555 1489 12770 12999 21928 21928 255 -0.026230667052118406 HAVETVVNM 9 Unmodified _HAVETVVNM_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2499084472656 2 500.250034 998.485516 0.7908 0.0003956 -0.71945 -0.00035991 0.071347 3.5691E-05 500.24962854582725 42.19 0.24895 37.506 37.364 37.613 -4.6846 22 15 2 0 0 0 0.019303 1 25453 25453 64.236 37.353 1 9873000 18556 1489 12770 13000 21929 21929 -0.013787628426030096 HAVGDDAQF 9 Unmodified _HAVGDDAQF_ 0 0 0 ENSG00000148730|ENST00000373218|EIF4EBP2 ENSG00000148730|ENST00000373218|EIF4EBP2 ENSG00000148730|ENST00000373218|EIF4EBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.214599609375 2 480.214506 958.414459 NaN NaN NaN NaN NaN NaN NaN 25.842 1 25.842 25.342 26.342 0 0 0 0 0.36957 1 13263 13263 21.537 9.0054 1 18557 5959 12771 13001 21930 21930 -0.0664113955576795 HAVGNVELY 9 Unmodified _HAVGNVELY_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2559814453125 2 501.256174 1000.49779 0.62796 0.00031477 -0.15268 -7.6534E-05 0.47528 0.00023824 501.25609918402967 39.08 0.40155 39.08 38.88 39.282 0 44 18 3 0 0 0 0.0086179 2 20855 20855;20959 89.427 43.797 1 65312000 18558 3174 12772 13002 21931;21932 21931 -0.002434031079133092 HAVGNVELY 9 Unmodified _HAVGNVELY_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2560119628906 2 501.256174 1000.49779 -0.31152 -0.00015615 0.79783 0.00039992 0.48631 0.00024376 501.25643326551153 39.316 0.14014 39.029 38.961 39.101 -0.28687 10 6 2 0 0 0 0.070838 1 20754 20754 39.957 18.211 1 2001200 18559 3174 12772 13002 21933 21933 -0.002434031079133092 HAVGNVELY 9 Unmodified _HAVGNVELY_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2568054199219 2 501.256174 1000.49779 0.72766 0.00036474 -0.26624 -0.00013345 0.46142 0.00023129 501.25592588986984 44.435 0.5699 39.583 39.264 39.834 -4.852 117 44 4 0 0 0 0.016184 1 27202 27202 67.344 35.038 1 137740000 18560 3174 12772 13002 21934 21934 -0.002434031079133092 HAVGPSTSL 9 Unmodified _HAVGPSTSL_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12 ENSG00000140262|ENST00000333725|TCF12 ENSG00000140262|ENST00000333725|TCF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7298889160156 2 434.729792 867.445031 -0.46659 -0.00020284 0.97401 0.00042343 0.50742 0.00022059 434.7301694174458 26.941 0.25184 26.941 26.803 27.055 0 21 11 2 0 0 0 0.012158 1 13857 13857 74.396 34.439 1 2489700 18561 5212 12773 13003 21935 21935 0.006006388292917109 HAVGPSTSL 9 Unmodified _HAVGPSTSL_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12 ENSG00000140262|ENST00000333725|TCF12 ENSG00000140262|ENST00000333725|TCF12 MSMS AL20221201_MKP_PDAC_01 4 434.7305297851562 2 434.729792 867.445031 NaN NaN NaN NaN NaN NaN NaN 30.531 1 27.034 26.534 27.534 -3.497 0 0 0 0.0233 1 17244 17244 74.396 29.989 1 18562 5212 12773 13003 21936 21936 0.006006388292917109 HAVHVALVL 9 Unmodified _HAVHVALVL_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7948913574219 2 479.795269 957.575986 0.98581 0.00047299 -0.70483 -0.00033817 0.28099 0.00013482 479.7950658790529 49.704 0.31473 49.655 49.531 49.846 -0.048824 23 15 2 0 0 0 0.1492 1 26830 26830 28.173 10.038 1 3585700 18563 2079 12774 13004 21937 21937 0.09550074267974651 HAVHVALVL 9 Unmodified _HAVHVALVL_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.79638671875 2 479.795269 957.575986 1.0838 0.00052 0.34648 0.00016624 1.4303 0.00068623 479.795375432312 83.593 0.92728 77.417 76.91 77.837 -6.1757 84 48 2 0 0 0 0.085487 2 55006 55006;55131 36.466 15.595 1 16401000 18564 2079 12774 13004 21938;21939 21938 0.09550074267974651 HAVHVALVL 9 Unmodified _HAVHVALVL_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MSMS AL20221201_MKP_PDAC_01 4 479.7960205078125 2 479.795269 957.575986 NaN NaN NaN NaN NaN NaN NaN 54.635 1 48.77 48.27 49.27 -5.8653 0 0 0 0.15264 1 34682 34682 36.466 8.2929 1 18565 2079 12774 13004 21940 21940 0.09550074267974651 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2666320800781 2 500.266542 998.51853 0.27866 0.0001394 -0.57992 -0.00029011 -0.30126 -0.00015071 500.26621946116046 62.112 0.41754 62.112 61.907 62.324 0 70 20 4 0 0 0 0.026094 2 34567 34567;34676 57.471 39.325 1 113930000 18566 1854 12775 13005 21941;21942 21941 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.5293579101562 1 999.525807 998.51853 -0.16282 -0.00016274 1.2526 0.001252 1.0898 0.0010893 999.5269353886681 62.076 0.21053 62.076 61.996 62.206 0 12 8 2 0 0 0 0.10734 1 34610 34610 32.305 22.958 1 1649300 18567 1854 12775 13005 21943 21943 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2662658691406 2 500.266542 998.51853 0.40929 0.00020475 -0.36343 -0.00018181 0.045866 2.2945E-05 500.2662903122329 62.566 0.55249 62.078 61.831 62.384 -0.48764 83 26 5 0 0 0 0.010877 3 34002 34002;34105;34215 77.984 47.348 1 198130000 18568 1854 12775 13005 21944;21945;21946 21944 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2672424316406 2 500.266542 998.51853 NaN NaN NaN NaN NaN NaN NaN 63.031 1 62.545 62.045 63.045 -0.48617 0 0 0 0.15618 1 34369 34369 36.044 21.463 1 18569 1854 12775 13005 21947 21947 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2668762207031 2 500.266542 998.51853 0.30795 0.00015406 -0.33321 -0.0001667 -0.025262 -1.2638E-05 500.2665336624655 62.164 0.31263 62.131 61.926 62.239 -0.032787 33 15 3 0 0 0 0.016184 1 33902 33902 67.344 45.597 1 18546000 18570 1854 12775 13005 21948 21948 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.5294189453125 1 999.525807 998.51853 0.49862 0.00049838 0.10417 0.00010412 0.60278 0.0006025 999.5262272250433 68.11 0.58475 61.935 61.69 62.275 -6.1757 81 34 3 0 0 0 0.0082281 4 44305 44253;44305;44442;44566 100.37 52.026 1 87755000 18571 1854 12775 13005 21949;21950;21951;21952 21950 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2669372558594 2 500.266542 998.51853 0.77612 0.00038827 0.072335 3.6187E-05 0.84846 0.00042446 500.26655030301663 68.108 1.0906 61.932 61.601 62.692 -6.1757 154 63 4 0 0 0 0.016184 3 44417 44281;44417;44543 67.344 43.323 1 466480000 18572 1854 12775 13005 21953;21954;21955 21954 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2669677734375 2 500.266542 998.51853 1.1313 0.00056594 0.0962 4.8126E-05 1.2275 0.00061407 500.2665750554258 69.021 0.47813 62.846 62.675 63.153 -6.1757 41 26 2 0 0 0 0.0086629 2 45045 45045;45195 101.72 55.701 1 19500000 18573 1854 12775 13005 21956;21957 21956 0.019211872717505685 HAVIDINAF 9 Unmodified _HAVIDINAF_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2671508789062 2 500.266542 998.51853 1.0262 0.00051337 -0.80487 -0.00040265 0.22133 0.00011072 500.26552173643995 70.299 0.96479 64.123 63.631 64.596 -6.1757 102 53 3 0 0 0 0.0086629 5 45654 45654;45807;45930;46056;46183 101.72 59.627 1 70193000 18574 1854 12775 13005 21958;21959;21960;21961;21962 21958 0.019211872717505685 HAVKTHMLY 9 Unmodified _HAVKTHMLY_ 0 0 0 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 ENSG00000110060|ENST00000227474|PUS3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.8941345214844 3 367.195421 1098.56443 0.75793 0.00027831 -0.49657 -0.00018234 0.26137 9.5973E-05 367.19520526875505 23.193 0.39364 20.415 20.148 20.542 -2.7784 52 33 2 0 0 0 0.20139 1 12524 12524 10.8 7.8043 1 8655800 18575 2697 12776 13006 21963 21963 0.019095091823373878 HAVPIYEGF 9 Unmodified _HAVPIYEGF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7591552734375 2 516.761092 1031.50763 0.18862 9.7473E-05 0.90299 0.00046663 1.0916 0.0005641 516.7603958588625 55.08 0.49786 54.602 54.429 54.927 -0.47798 33 23 2 0 0 0 0.095049 1 29850 29850 34.187 20.679 1 1631800 18576 3082 12777 13007 21964 21964 -0.006862151025416097 HAVPIYEGF 9 Unmodified _HAVPIYEGF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 516.761092 1031.50763 1.1354 0.00058674 -1.2474 -0.00064463 -0.11203 -5.7893E-05 516.7609458446624 60.733 0.098671 54.586 54.513 54.612 -6.1478 -0.0083769 -0.0010231 NaN 34.187 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8843300 18577 3082 12777 13007 -0.006862151025416097 HAVQTVETM 9 Oxidation (M) _HAVQTVETM(Oxidation (M))_ HAVQTVETM(1) HAVQTVETM(75) 0 0 1 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2450561523438 2 516.244949 1030.47534 -0.40198 -0.00020752 0.44873 0.00023165 0.046746 2.4132E-05 516.2452507019395 16.211 0.46844 16.211 15.882 16.351 0 205 115 3 0 0 0 0.011968 2 7838 7838;7935 74.929 36.955 1 3442400 18578 6166 12778 13008 21965;21966 21965 1104 -0.0386737056783204 HAVQTVETM 9 Oxidation (M) _HAVQTVETM(Oxidation (M))_ HAVQTVETM(1) HAVQTVETM(100) 0 0 1 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2454223632812 2 516.244949 1030.47534 0.44945 0.00023202 -0.94987 -0.00049037 -0.50042 -0.00025834 516.2444942454014 17.595 0.31145 15.008 14.874 15.185 -2.5866 126 57 3 0 0 0 0.0088174 2 9166 9166;9275 103.75 42.391 1 20739000 18579 6166 12778 13008 21967;21968 21967 1104 -0.0386737056783204 HAVQTVETM 9 Oxidation (M) _HAVQTVETM(Oxidation (M))_ 0 0 1 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 ENSG00000152147|ENST00000281950|GEMIN6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.244949 1030.47534 0.17134 8.8454E-05 0.112 5.7821E-05 0.28334 0.00014627 516.2450480239214 16.166 0.068739 16.171 16.119 16.188 0.0050564 -0.020046 -0.00032158 NaN 74.929 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 276140 18580 6166 12778 13008 1104 -0.0386737056783204 HAVSDPSIL 9 Unmodified _HAVSDPSIL_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7508239746094 2 469.750724 937.486896 0.59967 0.00028169 0.16318 7.6653E-05 0.76284 0.00035835 469.75073732667335 39.119 0.29199 39.119 38.99 39.282 0 24 13 2 0 0 0 0.027803 1 20989 20989 56.541 18.39 1 4554000 18581 4549 12779 13009 21969 21969 0.01565194517809232 HAVSPIAKY 9 Unmodified _HAVSPIAKY_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50257250-50268886:+|nuORF nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2765197753906 2 493.276909 984.539266 -0.35084 -0.00017306 -0.55156 -0.00027207 -0.90241 -0.00044514 493.2766498590073 25.149 0.22478 25.149 25.036 25.26 0 29 11 3 0 0 0 0.011968 1 12867 12867 74.929 49.53 1 3323500 18582 3574 12780 13010 21970 21970 0.046377776514077595 HAVSPIAKY 9 Unmodified _HAVSPIAKY_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50257250-50268886:+|nuORF nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2772216796875 2 493.276909 984.539266 0.4142 0.00020432 0.4488 0.00022138 0.86301 0.0004257 493.2768570917578 27.921 0.3883 24.773 24.547 24.935 -3.1482 36 20 3 0 0 0 0.0026776 2 15561 15443;15561 128.37 80.02 1 40094000 18583 3574 12780 13010 21971;21972 21972 0.046377776514077595 HAVSYGTVAL 10 Unmodified _HAVSYGTVAL_ 0 0 0 REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.27099609375 2 509.271824 1016.5291 -0.11447 -5.8295E-05 -0.13164 -6.7042E-05 -0.24611 -0.00012534 509.27162065697513 24.568 0.23057 24.568 24.448 24.678 0 24 13 2 0 0 0 0.42068 1 12570 12570 20.454 2.3073 1 1511200 + 18584 26883 12781 13011 21973 21973 0.021491699262014663 HAVSYGTVAL 10 Unmodified _HAVSYGTVAL_ 0 0 0 REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF REV__ENST00000430069.5_1_3:176782780-176816307:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 509.2718811035156 2 509.271824 1016.5291 NaN NaN NaN NaN NaN NaN NaN 27.142 1 24.105 23.605 24.605 -3.0365 0 0 0 0.13561 1 15017 15017 48.346 2.6462 1 + 18585 26883 12781 13011 21974 21974 0.021491699262014663 HAVTVVNIL 9 Unmodified _HAVTVVNIL_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2930297851562 2 483.292559 964.570566 0.30505 0.00014743 0.14313 6.9176E-05 0.44818 0.0002166 483.29256368359586 61.717 0.29196 61.229 61.074 61.366 -0.48764 28 13 3 0 0 0 0.013472 1 33589 33589 70.716 34.671 1 4073400 18586 2169 12782 13012 21975 21975 0.08686350685513844 HAVVFASSFG 10 Unmodified _HAVVFASSFG_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3;REV__nc|ENSG00000087116|O95450-2|ADAMTS2 REV__nc|ENSG00000087116|O95450-2|ADAMTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2560729980469 2 511.258717 1020.50288 0.20631 0.00010548 -3.143 -0.0016069 -2.9367 -0.0015014 511.7593345521101 62.122 0.17089 62.122 61.996 62.167 0 10 6 2 0 0 0 0.44373 1 34633 34633 19.257 3.4098 1 1527400 + 18587 21314;17778 12783 13013 21976 21976 -0.006550992452844184 HAVVICTEW 9 Carbamidomethyl (C) _HAVVIC(Carbamidomethyl (C))TEW_ HAVVIC(1)TEW HAVVIC(60)TEW 0 1 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7721557617188 2 557.771134 1113.52771 1.5488 0.00086388 0.22524 0.00012563 1.774 0.00098951 557.7713539151185 58.606 0.49957 52.532 52.28 52.779 -6.0745 61 27 3 0 0 0 0.023761 2 37468 37468;37596 59.795 43.948 1 38624000 18588 2677 12784 13014 21977;21978 21977 271 -0.0245078743423619 HAVVNLINY 9 Unmodified _HAVVNLINY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7879638671875 2 521.787641 1041.56073 0.36345 0.00018964 -0.1569 -8.1868E-05 0.20655 0.00010777 521.7875099787772 53.784 0.3539 53.332 53.148 53.502 -0.45173 62 17 5 0 0 0 0.013472 2 29078 29078;29186 70.716 36.613 1 76214000 18589 7707 12785 13015 21979;21980 21979 0.04161162680134112 HAVVNLINY 9 Unmodified _HAVVNLINY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7874145507812 2 521.787641 1041.56073 -0.23734 -0.00012384 0.31192 0.00016275 0.074578 3.8914E-05 521.7878712938139 53.453 0.23987 53.389 53.241 53.481 -0.063423 29 11 3 0 0 0 0.0094915 1 28946 28946 81.864 39.769 1 12746000 18590 7707 12785 13015 21981 21981 0.04161162680134112 HAVVNLINY 9 Unmodified _HAVVNLINY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7886352539062 2 521.787641 1041.56073 1.0043 0.00052405 -0.88366 -0.00046108 0.12067 6.2963E-05 521.787196642566 59.742 0.8381 53.627 53.377 54.216 -6.1147 94 45 3 0 0 0 0.0094915 4 38295 38295;38437;38611;38764 81.864 30.758 1 299870000 18591 7707 12785 13015 21982;21983;21984;21985 21982 0.04161162680134112 HAVVTVPAY 9 Unmodified _HAVVTVPAY_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.76318359375 2 478.763635 955.512717 0.63679 0.00030487 -0.58811 -0.00028157 0.048682 2.3307E-05 478.7631022161749 42.395 0.32681 42.395 42.238 42.565 0 37 15 3 0 0 0 0.023761 1 22940 22940 59.795 21.644 1 10218000 18592 673 12786 13016 21986 21986 0.03318088760079263 HAVVTVPAY 9 Unmodified _HAVVTVPAY_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.2275390625 2 478.763635 955.512717 0.6864 0.00032862 -3.0382 -0.0014546 -2.3518 -0.0011259 478.7625703908182 48.132 0.43073 42.898 42.675 43.106 -5.2339 35 25 2 0 0 0 0.029258 1 30059 30059 49.669 24.995 1 41153000 18593 673 12786 13016 21987 21987 0.03318088760079263 HAVVTVPAY 9 Unmodified _HAVVTVPAY_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.763635 955.512717 0.21322 0.00010208 -0.28166 -0.00013485 -0.068442 -3.2767E-05 478.7632296317851 42.673 0.17558 42.367 42.258 42.434 -0.30682 -0.014324 0.00025582 NaN 59.795 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3512000 18594 673 12786 13016 0.03318088760079263 HAVYRDDLKK 10 Unmodified _HAVYRDDLKK_ 0 0 0 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 ENSG00000143546|ENST00000368733|S100A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5629272460938 3 415.56305 1243.66732 -0.67606 -0.00028094 0.44304 0.00018411 -0.23302 -9.6834E-05 415.5632876509928 14.66 0.051745 14.66 14.629 14.681 0 21 14 2 0 0 0 0.69626 1 6990 6990 3.3196 1.7274 1 740600 18595 5524 12787 13017 21988 21988 0.05523293174610444 HAWIRPFF 8 Unmodified _HAWIRPFF_ 0 0 0 REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7930908203125 2 537.287611 1072.56067 -0.4286 -0.00023028 -0.7199 -0.00038679 -1.1485 -0.00061708 537.2870800386423 77.042 0.35739 76.562 76.343 76.701 -0.47945 31 15 3 0 0 0 8.7369 1 42089 42089 2.8892 0 1 1283300 + 18596 27922 12788 13018 21989 21989 0.027292074707929714 HAYALELLF 9 Unmodified _HAYALELLF_ 0 0 0 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7919921875 2 538.792392 1075.57023 0.2375 0.00012796 -2.267 -0.0012215 -2.0295 -0.0010935 538.7909616406573 97.137 0.37564 96.894 96.706 97.081 -0.24277 25 16 2 0 0 0 0.55144 1 53028 53028 4.3292 0 1 572350 18597 3504 12789 13019 21990 21990 0.03546930965649153 HAYASFIDAF 10 Unmodified _HAYASFIDAF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.274169921875 2 571.269281 1140.52401 0.72367 0.00041341 -1.2345 -0.00070524 -0.51084 -0.00029183 571.2696324993318 72.033 0.29781 71.557 71.389 71.686 -0.47609 25 11 3 0 0 0 0.42068 1 39378 39378 20.454 9.6297 1 1003100 18598 7082 12790 13020 21991 21991 -0.04063133936415397 HAYDGKDYI 9 Unmodified _HAYDGKDYI_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7517700195312 2 541.251089 1080.48762 -0.35189 -0.00019046 -0.54384 -0.00029435 -0.89573 -0.00048482 541.2506696025032 26.27 0.1771 26.27 26.187 26.364 0 19 8 3 0 0 0 0.2324 1 13487 13487 21.747 10.106 1 1820000 18599 10315;16517 12791 13021 21992 21992 -0.04940010833138331 HAYDNFLEH 9 Unmodified _HAYDNFLEH_ 0 0 0 nc|ENSG00000141198|O75674-3|TOM1L1;ENSG00000141198|ENST00000575882|TOM1L1 nc|ENSG00000141198|O75674-3|TOM1L1 nc|ENSG00000141198|O75674-3|TOM1L1 MSMS AL20221201_MKP_PDAC_01 4 573.2548828125 2 573.254163 1144.49377 NaN NaN NaN NaN NaN NaN NaN 41.899 1 37.291 36.791 37.791 -4.6079 0 0 0 0.013541 1 25233 25233 87.258 60.99 1 18600 5305 12792 13022 21993 21993 -0.072694926016311 HAYEPLASF 9 Unmodified _HAYEPLASF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000561658.5_1_16:67486328-67515058:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7523193359375 2 517.750724 1033.4869 0.70441 0.00036471 2.9194 0.0015115 3.6238 0.0018762 517.752292856994 53.841 0.30573 53.841 53.705 54.011 0 28 13 3 0 0 0 0.14602 1 29879 29879 28.487 1.6032 1 1830000 18601 6670 12793 13023 21994 21994 -0.028508054821941187 HAYFENLFD 9 Unmodified _HAYFENLFD_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2;REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.258056640625 2 578.258914 1154.50327 -0.57807 -0.00033428 -0.35711 -0.0002065 -0.93519 -0.00054078 578.2583993766897 30.448 0.2028 30.448 30.343 30.546 0 16 9 2 0 0 0 0.32871 1 15808 15808 15.847 4.2069 1 2340900 + 18602 21677;29556 12794 13024 21995 21995 -0.06779724316106694 HAYFMCFLC 9 Unmodified _HAYFMCFLC_ 0 0 0 nc|ENSG00000139880|Q86UP0-3|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 nc|ENSG00000139880|Q86UP0-3|CDH24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8241271972656 3 378.823831 1133.44966 0.41903 0.00015874 0.88196 0.00033411 1.301 0.00049284 378.82413637922144 40.702 0.24355 40.708 40.593 40.837 0.0050583 18 11 2 0 0 0 0.57331 1 21733 21733 2.9952 0 1 4355600 18603 16230 12795 13025 21996 21996 -0.11172259615455005 HAYGDMYE 8 Unmodified _HAYGDMYE_ 0 0 0 RMDN2|p.R222H|1|0.27|ENSG00000115841|chr2:37975249-37975249|G/A|missense_variant RMDN2|p.R222H|1|0.27|ENSG00000115841|chr2:37975249-37975249|G/A|missense_variant RMDN2|p.R222H|1|0.27|ENSG00000115841|chr2:37975249-37975249|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.1888732910156 2 493.189642 984.364732 -0.49164 -0.00024247 0.90465 0.00044616 0.41301 0.00020369 493.1901918496698 26.793 0.25144 26.793 26.658 26.909 0 19 11 2 0 0 0 0.80232 1 13770 13770 5.2307 0 1 1039400 18604 30148 12796 13026 21997 21997 -0.12807590556064952 HAYIHSVQF 9 Unmodified _HAYIHSVQF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2770385742188 2 551.277441 1100.54033 0.041955 2.3129E-05 -0.093557 -5.1576E-05 -0.051601 -2.8447E-05 551.2771351577975 37.76 0.26322 37.489 37.375 37.638 -0.27133 30 12 3 0 0 0 0.0090851 1 19847 19847 85.357 58.473 1 13620000 18605 7807 12797 13027 21998 21998 -0.0059200797966241225 HAYIHSVQF 9 Unmodified _HAYIHSVQF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8544006347656 3 367.854053 1100.54033 1.6105 0.00059243 -0.69472 -0.00025555 0.91578 0.00033687 367.8532339573539 42.062 0.31444 37.378 37.109 37.423 -4.6846 33 19 2 0 0 0 0.040472 1 25262 25262 43.858 31.618 1 7217200 18606 7807 12797 13027 21999 21999 -0.0059200797966241225 HAYIHSVQF 9 Unmodified _HAYIHSVQF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.277441 1100.54033 -0.097554 -5.3779E-05 0.81848 0.00045121 0.72093 0.00039743 551.2780245550365 37.406 0.13349 37.428 37.35 37.484 0.021545 -0.030312 0.00084042 NaN 85.357 15 5 3 NaN NaN NaN NaN 0 NaN NaN 0 991330 18607 7807 12797 13027 -0.0059200797966241225 HAYNQPEDLVY 11 Unmodified _HAYNQPEDLVY_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.8139038085938 2 674.812042 1347.60953 1.0553 0.00071216 0.016994 1.1468E-05 1.0723 0.00072363 674.8120621653618 50.257 0.30685 44.718 44.581 44.888 -5.5391 38 19 3 0 0 0 0.0010665 1 31474 31474 82.529 63.272 1 17375000 18608 6164 12798 13028 22000 22000 -0.05037013541414126 HCAAVHHG 8 Unmodified _HCAAVHHG_ 0 0 0 ENST00000507609.5_1_17:48693658-48695586:+|nuORF ENST00000507609.5_1_17:48693658-48695586:+|nuORF ENST00000507609.5_1_17:48693658-48695586:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.1875305175781 2 416.187571 830.36059 NaN NaN NaN NaN NaN NaN NaN 17.271 1 17.285 16.785 17.785 0.013865 0 0 0 0.97444 1 8574 8574 0.79363 0 1 18609 14542 12799 13029 22001 22001 -0.06137590468460985 HCACPQCG 8 Unmodified _HCACPQCG_ 0 0 0 REV__ENSG00000172037|ENST00000305544|LAMB2 REV__ENSG00000172037|ENST00000305544|LAMB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.6414794921875 2 409.640751 817.266949 NaN NaN NaN NaN NaN NaN NaN 1.0442 1 1.0236 0.52359 1.5236 -0.020623 0 0 0 0.97444 1 539 539 0 0 1 + 18610 22624 12800 13030 22002 22002 -0.14899393957409757 HCAEPFTEY 9 Carbamidomethyl (C) _HC(Carbamidomethyl (C))AEPFTEY_ HC(1)AEPFTEY HC(85)AEPFTEY 0 1 0 ENSG00000119421|ENST00000373768|NDUFA8 ENSG00000119421|ENST00000373768|NDUFA8 ENSG00000119421|ENST00000373768|NDUFA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2337646484375 2 577.234581 1152.45461 0.73655 0.00042516 -2.0067 -0.0011583 -1.2702 -0.00073318 577.2332997692174 43.112 0.33063 38.347 38.146 38.477 -4.7648 36 21 2 0 0 0 0.0090851 1 26092 26092 85.357 62.208 1 21566000 18611 3436 12801 13031 22003 22003 347 -0.11551960947508633 HCASPAFAY 9 Carbamidomethyl (C) _HC(Carbamidomethyl (C))ASPAFAY_ HC(1)ASPAFAY HC(71)ASPAFAY 0 1 0 nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2216796875 2 512.221277 1022.428 1.1237 0.00057556 -0.015361 -7.8684E-06 1.1083 0.0005677 512.2211892329334 40.928 0.31542 36.32 36.134 36.449 -4.6079 30 19 2 0 0 0 0.013472 1 24438 24438 70.716 53.629 1 13295000 18612 3381 12802 13032 22004 22004 342 -0.08231605048172241 HCDCSHAD 8 Unmodified _HCDCSHAD_ 0 0 0 nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11 nc|ENSG00000157890|A6BM72-3|MEGF11 nc|ENSG00000157890|A6BM72-3|MEGF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.8944091796875 2 444.142169 886.269786 NaN NaN NaN NaN NaN NaN NaN 16.107 1 16.112 15.612 16.612 0.0050564 0 0 0 0.97444 1 8060 8060 0 0 1 18613 6548 12803 13033 22005 22005 -0.17789847298911354 HCELGPVHHI 10 Unmodified _HCELGPVHHI_ 0 0 0 REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4 REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4 MSMS AL20221201_MKP_PDAC_01 4 381.1904296875 3 381.190559 1140.54985 NaN NaN NaN NaN NaN NaN NaN 82.024 1 75.848 75.348 76.348 -6.1757 0 0 0 0.96627 1 53865 53865 2.086 0.17963 1 + 18614 21737 12804 13034 22006 22006 -0.01480562965775789 HCEPGWGGPD 10 Unmodified _HCEPGWGGPD_ 0 0 0 nc|ENSG00000157890|A6BM72-3|MEGF11;nc|ENSG00000157890|A6BM72-2|MEGF11;nc|ENSG00000157890|A6BM72|MEGF11;ENSG00000157890|ENST00000395614|MEGF11 nc|ENSG00000157890|A6BM72-3|MEGF11 nc|ENSG00000157890|A6BM72-3|MEGF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1408996582031 3 352.139753 1053.39743 0.27117 9.549E-05 -2.4815 -0.00087384 -2.2103 -0.00077835 352.1401766337281 59.43 0.36143 59.43 59.241 59.602 0 60 15 6 0 0 0 0.70895 1 33186 33186 1.9064 0.062138 1 9302000 18615 6548 12805 13035 22007 22007 -0.1271338343321986 HCERSEGYNY 10 Unmodified _HCERSEGYNY_ 0 0 0 GRM8|p.C541S|1|0.18|ENSG00000179603|chr7:126533760-126533760|C/G|missense_variant GRM8|p.C541S|1|0.18|ENSG00000179603|chr7:126533760-126533760|C/G|missense_variant GRM8|p.C541S|1|0.18|ENSG00000179603|chr7:126533760-126533760|C/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.2530517578125 2 629.251294 1256.48803 -0.30276 -0.00019051 -0.42611 -0.00026813 -0.72886 -0.00045864 629.2511399379312 40.853 0.70991 40.853 40.675 41.385 0 312 54 7 0 0 0 0.71123 1 22240 22240 1.6526 0 1 498120000 18616 15905 12806 13036 22008 22008 -0.12994959175580334 HCEYEGADK 9 Unmodified _HCEYEGADK_ 0 0 0 REV__ENSG00000134256|ENST00000682167|CD101 REV__ENSG00000134256|ENST00000682167|CD101 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1497192382812 3 351.143163 1050.40766 NaN NaN NaN NaN NaN NaN NaN 64.101 1 64.101 63.601 64.601 0 0 0 0 0.84737 1 35747 35747 0.96228 0 1 + 18617 19969 12807 13037 22009 22009 -0.11552820498650362 HCEYEGADK 9 Unmodified _HCEYEGADK_ 0 0 0 REV__ENSG00000134256|ENST00000682167|CD101 REV__ENSG00000134256|ENST00000682167|CD101 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.141845703125 3 351.143163 1050.40766 NaN NaN NaN NaN NaN NaN NaN 71.721 1 71.721 71.221 72.221 0 0 0 0 0.85852 1 39945 39945 0.20686 0 1 + 18618 19969 12807 13037 22010 22010 -0.11552820498650362 HCGHMERGHCH 11 Unmodified _HCGHMERGHCH_ 0 0 0 ENST00000461241.1_1_22:31518982-31522439:+|nuORF ENST00000461241.1_1_22:31518982-31522439:+|nuORF ENST00000461241.1_1_22:31518982-31522439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.2532348632812 2 652.253125 1302.4917 NaN NaN NaN NaN NaN NaN NaN 96.581 1 96.276 95.776 96.776 -0.30472 0 0 0 0.9435 1 52743 52743 0 0 1 18619 13656 12808 13038 22011 22011 -0.14744891154350626 HCGNLDYHFV 10 Unmodified _HCGNLDYHFV_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1787719726562 3 402.178319 1203.51313 NaN NaN NaN NaN NaN NaN NaN 14.885 1 14.885 14.385 15.385 0 0 0 0 1.0019 1 7119 7119 0.15932 0.036457 1 18620 2892 12809 13039 22012 22012 -0.08048859582368095 HCGNLDYHFV 10 Unmodified _HCGNLDYHFV_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MSMS AL20221201_MKP_PDAC_01 4 402.1795349121094 3 402.178319 1203.51313 NaN NaN NaN NaN NaN NaN NaN 1.4179 1 -1.064 -1.564 -0.56403 -2.482 0 0 0 1.0019 1 734 734 0.15932 0.036457 1 18621 2892 12809 13039 22013 22013 -0.08048859582368095 HCGNLDYHFV 10 Unmodified _HCGNLDYHFV_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MSMS AL20221201_MKP_PDAC_01 4 402.1799011230469 3 402.178319 1203.51313 NaN NaN NaN NaN NaN NaN NaN 2.1571 1 -0.32484 -0.82484 0.17516 -2.482 0 0 0 1.0019 1 1106 1106 0.15932 0.036457 1 18622 2892 12809 13039 22014 22014 -0.08048859582368095 HCGNSGHGG 9 Unmodified _HCGNSGHGG_ 0 0 0 REV__ENST00000550317.1_1_12:111284592-111319020:+|nuORF REV__ENST00000550317.1_1_12:111284592-111319020:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 825.306396484375 1 825.30566 824.298384 1.7052 0.0014073 1.0973 0.0009056 2.8025 0.0023129 825.306349982104 107.75 0.56049 101.57 101.32 101.88 -6.1757 161 101 2 0 0 0 0.62242 1 71951 71951 0 0 1 4832600 + 18623 28701 12810 13040 22015 22015 -0.12079361607436567 HCLGGYDG 8 Unmodified _HCLGGYDG_ 0 0 0 ENST00000426448.1_1_22:20805532-20806108:+|nuORF ENST00000426448.1_1_22:20805532-20806108:+|nuORF ENST00000426448.1_1_22:20805532-20806108:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.16455078125 2 411.16597 820.317388 NaN NaN NaN NaN NaN NaN NaN 69.293 1 69.293 68.793 69.793 0 0 0 0 0.97444 1 38609 38609 0.69038 0.69038 1 18624 13179 12811 13041 22016 22016 -0.09995825036412498 HCLNEATDLTF 11 Unmodified _HCLNEATDLTF_ 0 0 0 REV__ENSG00000133640|ENST00000393217|LRRIQ1 REV__ENSG00000133640|ENST00000393217|LRRIQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.2894287109375 2 632.287345 1262.56014 1.1453 0.00072413 0.40353 0.00025515 1.5488 0.00097928 632.2875071818062 100.16 0.26659 93.986 93.855 94.122 -6.1757 48 16 4 0 0 0 0.33405 1 66864 66864 24.991 3.454 1 278100000 + 18625 19928 12812 13042 22017 22017 -0.06064044821891912 HCLTFFYHMY 10 Unmodified _HCLTFFYHMY_ 0 0 0 nc|ENSG00000165072|Q7Z304-2|MAMDC2;ENSG00000165072|ENST00000377182|MAMDC2 nc|ENSG00000165072|Q7Z304-2|MAMDC2 nc|ENSG00000165072|Q7Z304-2|MAMDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8661499023438 3 454.531705 1360.57328 0.026394 1.1997E-05 -0.25867 -0.00011758 -0.23228 -0.00010558 454.5314375695683 23.996 0.41806 23.996 23.791 24.209 0 49 20 3 0 0 0 0.71123 1 12292 12292 0.69767 0 1 1269000 18626 7286 12813 13043 22018 22018 -0.09257885243482633 HCNCKWLNDKL 11 Unmodified _HCNCKWLNDKL_ 0 0 0 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 REV__nc|ENSG00000144771|Q9HBL6-2|LRTM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.5525207519531 3 458.55328 1372.63801 NaN NaN NaN NaN NaN NaN NaN 19.493 1 19.521 19.021 20.021 0.028357 0 0 0 0.94337 1 9831 9831 0.094841 0 1 + 18627 20734 12814 13044 22019 22019 -0.03340310437511107 HCPLRLFQNN 10 Unmodified _HCPLRLFQNN_ 0 0 0 REV__ENST00000535572.5_1_12:992660-992994:+|nuORF REV__ENST00000535572.5_1_12:992660-992994:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5448303222656 3 414.545113 1240.61351 NaN NaN NaN NaN NaN NaN NaN 27.64 1 27.669 27.169 28.169 0.028664 0 0 0 0.99091 1 14369 14369 0.69767 0 1 + 18628 28530 12815 13045 22020 22020 0.0028279747130000032 HCQGVVHRD 9 Unmodified _HCQGVVHRD_ 0 0 0 nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6 nc|ENSG00000072133|Q9UK32-2|RPS6KA6 nc|ENSG00000072133|Q9UK32-2|RPS6KA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.749267578125 2 525.748524 1049.4825 -0.20223 -0.00010632 -0.31182 -0.00016394 -0.51405 -0.00027026 525.7482785435184 45.039 0.23777 44.715 44.527 44.765 -0.32425 21 12 2 0 0 0 0.43463 1 23993 23993 10.824 1.4765 1 39069000 18629 1071 12816 13046 22021 22021 -0.04026593176740789 HCRHERARR 9 Unmodified _HCRHERARR_ 0 0 0 REV__ENST00000310924.6_1_17:77907534-77907972:-|nuORF REV__ENST00000310924.6_1_17:77907534-77907972:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5477905273438 3 407.547851 1219.62172 NaN NaN NaN NaN NaN NaN NaN 7.046 1 7.055 6.555 7.555 0.0089307 0 0 0 0.8622 1 3516 3516 0 0 1 + 18630 25419 12817 13047 22022 22022 0.020697892312682598 HCRMHLKLSF 10 Unmodified _HCRMHLKLSF_ 0 0 0 REV__ENST00000508995.1_1_4:146791609-146813520:-|nuORF REV__ENST00000508995.1_1_4:146791609-146813520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.9140014648438 3 424.554844 1270.6427 0.030394 1.2904E-05 2.6241 0.0011141 2.6545 0.001127 424.8903355924742 33.287 0.20041 33.316 33.185 33.386 0.028934 12 8 2 0 0 0 0.67033 1 17474 17474 3.3196 1.2336 1 538970 + 18631 21077 12818 13048 22023 22023 0.018206184959126404 HCRPSVAV 8 Unmodified _HCRPSVAV_ 0 0 0 REV__ENST00000444521.6_1_1:2521013-2521196:+|nuORF REV__ENST00000444521.6_1_1:2521013-2521196:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8818359375 2 434.726529 867.438506 0.14657 6.372E-05 -1.9397 -0.00084324 -1.7931 -0.00077952 434.72595362096064 69.015 0.23085 68.534 68.421 68.652 -0.48071 14 9 2 0 0 0 8.7369 1 37722 37722 7.2892 0 1 657070 + 18632 27123 12819 13049 22024 22024 -0.0005157760308520665 HCSAAPDT 8 Unmodified _HCSAAPDT_ 0 0 0 REV__ENST00000392723.5_2_1:151379095-151379711:-|nuORF REV__ENST00000392723.5_2_1:151379095-151379711:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.1616516113281 2 401.163428 800.312302 NaN NaN NaN NaN NaN NaN NaN 84.632 1 84.133 83.633 84.633 -0.49961 0 0 0 0.97444 1 46312 46312 0.79363 0 1 + 18633 26398 12820 13050 22025 22025 -0.09584128899041389 HCSCCYCC 8 Unmodified _HCSCCYCC_ 0 0 0 REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 461.1131591796875 2 461.112654 920.210756 NaN NaN NaN NaN NaN NaN NaN 107.16 1 100.98 100.48 101.48 -6.1757 0 0 0 0.97444 1 71690 71690 0 0 1 + 18634 25763 12821 13051 22026 22026 -0.25254106180761937 HCSCCYCCPCC 11 Unmodified _HCSCCYCCPCC_ 0 0 0 REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF REV__ENST00000346964.6_2_3:196770181-196770280:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.6453247070312 2 612.648221 1223.28189 NaN NaN NaN NaN NaN NaN NaN 104.3 1 104.25 103.75 104.75 -0.048737 0 0 0 0.9435 1 57907 57907 0 0 1 + 18635 25763 12822 13052 22027 22027 -0.32082097529905695 HCSGRPLFY 9 Unmodified _HCSGRPLFY_ 0 0 0 ENSG00000275722|ENST00000615905|LYZL6 ENSG00000275722|ENST00000615905|LYZL6 ENSG00000275722|ENST00000615905|LYZL6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.756591796875 2 540.258194 1078.50183 0.058987 3.1868E-05 -0.24643 -0.00013314 -0.18744 -0.00010127 540.2583259763813 42.1 0.26103 42.1 41.864 42.125 0 18 13 2 0 0 0 0.18882 1 22712 22712 15.847 2.3393 1 7922400 18636 10910 12823 13053 22028 22028 -0.03427636885862739 HCSGVCPL 8 Unmodified _HCSGVCPL_ 0 0 0 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;ENST00000456496.6_1_7:149575832-149576763:+|nuORF;ENST00000471877.5_1_7:149575832-149576763:+|nuORF nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 MSMS AL20221201_MKP_PDAC_01 4 408.5161437988281 2 408.180566 814.346579 NaN NaN NaN NaN NaN NaN NaN 47.156 1 42.076 41.576 42.576 -5.0805 0 0 0 0.97348 1 29239 29239 5.7604 0.52976 1 18637 16380 12824 13054 22029 22029 -0.06802004011774443 HCVGDDITM 9 Carbamidomethyl (C),Oxidation (M) _HC(Carbamidomethyl (C))VGDDITM(Oxidation (M))_ HC(1)VGDDITM HCVGDDITM(1) HC(71)VGDDITM HCVGDDITM(71) 0 1 1 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2130737304688 2 532.212792 1062.41103 0.24306 0.00012936 -0.81036 -0.00043128 -0.5673 -0.00030193 532.2126231365969 24.44 0.31298 21.613 21.501 21.814 -2.8273 25 17 2 0 0 0 0.013472 1 13300 13300 70.716 44.374 1 2231400 18638 5248 12825 13055 22030 22030 539 963 -0.11767893716296385 HCYHDPVV 8 Unmodified _HCYHDPVV_ 0 0 0 REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF REV__ENST00000561483.5_1_15:84323016-84694242:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.216552734375 2 485.215995 968.417436 NaN NaN NaN NaN NaN NaN NaN 19.408 1 19.431 18.931 19.931 0.023106 0 0 0 0.97444 1 9783 9783 0.79363 0 1 + 18639 21320 12826 13056 22031 22031 -0.06803587702597724 HCYHQAEEF 9 Unmodified _HCYHQAEEF_ 0 0 0 REV__ENSG00000277481|ENST00000620267|PKD1L3 REV__ENSG00000277481|ENST00000620267|PKD1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.23486328125 2 582.232373 1162.45019 0.79816 0.00046472 0.82428 0.00047992 1.6224 0.00094464 582.2331207685074 51.279 0.23699 51.279 51.132 51.369 0 19 10 2 0 0 0 0.43463 1 28283 28283 10.824 1.4408 1 4756500 + 18640 24664 12827 13057 22032 22032 -0.12453425370404148 HDAILQYSN 9 Unmodified _HDAILQYSN_ 0 0 0 REV__ENSG00000072315|ENST00000262839|TRPC5;REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4 REV__ENSG00000072315|ENST00000262839|TRPC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.27685546875 2 530.756538 1059.49852 0.32938 0.00017482 0.58829 0.00031224 0.91767 0.00048706 530.7572300530653 53.852 0.38253 53.385 53.285 53.667 -0.46664 27 18 2 0 0 0 0.19205 1 29232 29232 14.838 2.3067 1 1983700 + 18641 17514;19908 12828 13058 22033 22033 -0.028846084588622034 HDAPRARRS 9 Unmodified _HDAPRARRS_ 0 0 0 REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 355.8594970703125 3 355.860201 1064.55877 NaN NaN NaN NaN NaN NaN NaN 46.727 1 41.647 41.147 42.147 -5.0805 0 0 0 0.6557 1 28918 28918 7.1017 0 1 + 18642 24964 12829 13059 22034 22034 0.029075467148913958 HDDASLPTHL 10 Unmodified _HDDASLPTHL_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2671508789062 2 553.26727 1104.51999 0.18168 0.00010052 -0.1361 -7.5299E-05 0.04558 2.5218E-05 553.26724379591 18.816 0.18768 18.822 18.747 18.935 0.0060463 22 9 3 0 0 0 0.20195 1 9549 9549 25.399 6.1423 1 2345200 18643 1009 12830 13060 22035 22035 -0.028092234301539065 HDDASLPTHL 10 Unmodified _HDDASLPTHL_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 553.26727 1104.51999 -0.40109 -0.00022191 1.2512 0.00069223 0.85007 0.00047031 553.2677924138776 18.806 0.13142 18.829 18.795 18.926 0.023106 0.0033064 0.00074754 NaN 25.399 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 534240 18644 1009 12830 13060 -0.028092234301539065 HDDMVRHRD 9 Unmodified _HDDMVRHRD_ 0 0 0 REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.7673950195312 2 590.767446 1179.52034 0.2019 0.00011928 0.5234 0.00030921 0.7253 0.00042848 590.7677373824567 39.155 0.36329 39.167 38.981 39.344 0.011452 44 16 4 0 0 0 0.51218 1 20909 20909 6.7232 6.7232 1 9699000 + 18645 29803 12831 13061 22036 22036 -0.06224126981919653 HDEDEGFF 8 Unmodified _HDEDEGFF_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.1913146972656 2 498.190697 994.36684 -0.17634 -8.7849E-05 0.34603 0.00017239 0.1697 8.4541E-05 498.1912208881487 48.86 0.62069 48.86 48.531 49.152 0 101 29 5 0 0 0 0.80143 1 26704 26704 5.7604 0 1 66977000 18646 4693 12832 13062 22037 22037 -0.13056838546594918 HDEDEGFF 8 Unmodified _HDEDEGFF_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 995.3746948242188 1 995.374117 994.36684 -0.54247 -0.00053996 1.5985 0.0015911 1.056 0.0010511 995.3753162781229 48.838 0.19529 48.838 48.695 48.89 0 13 8 2 0 0 0 0.74163 1 26800 26800 13.508 0 1 809810 18647 4693 12832 13062 22038 22038 -0.13056838546594918 HDEDEGFF 8 Unmodified _HDEDEGFF_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.191650390625 2 498.190697 994.36684 0.34086 0.00016981 0.77894 0.00038806 1.1198 0.00055788 498.1914158707724 49.093 0.59638 48.721 48.446 49.043 -0.37172 114 29 5 0 0 0 0.80143 1 26383 26383 5.7604 0 1 86090000 18648 4693 12832 13062 22039 22039 -0.13056838546594918 HDELHFTHFNF 11 Unmodified _HDELHFTHFNF_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.3238525390625 2 722.32565 1442.63675 0.47688 0.00034447 -2.1209 -0.001532 -1.644 -0.0011875 722.324559778302 48.987 0.23694 43.591 43.424 43.661 -5.3961 24 14 2 0 0 0 0.50515 1 30511 30511 16.149 1.3108 1 41543000 + 18649 21951 12833 13063 22040 22040 -0.06686485210389037 HDELISKSF 9 Unmodified _HDELISKSF_ 0 0 0 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENST00000528797.5_1_11:57414222-57414580:-|nuORF;ENSG00000166793|ENST00000300022|YPEL4 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000166793|ENST00000300022|YPEL4 ENSG00000175155|ENST00000312655|YPEL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7957153320312 2 538.274564 1074.53457 0.43488 0.00023409 0.89998 0.00048444 1.3349 0.00071852 538.2743561116596 67.392 0.4966 67.392 67.064 67.56 0 46 21 3 0 0 0 0.20883 1 37528 37528 8.1555 0.8663 1 3287900 18650 1740;7531 12834 13064 22041 22041 0.0002884871801143163 HDESATIL 8 Unmodified _HDESATIL_ 0 0 0 REV__ENSG00000115808|ENST00000263918|STRN REV__ENSG00000115808|ENST00000263918|STRN MSMS AL20221201_MKP_PDAC_01 4 443.2196044921875 2 443.219257 884.423961 NaN NaN NaN NaN NaN NaN NaN 28.072 1 24.924 24.424 25.424 -3.1482 0 0 0 0.65904 1 15620 15620 30.225 1.738 1 + 18651 19007 12835 13065 22042 22042 -0.022873712702221383 HDEVDEYQRHW 11 Unmodified _HDEVDEYQRHW_ 0 0 0 SPRTN|p.R163Q|1|0.23|ENSG00000010072|chr1:231351341-231351341|G/A|missense_variant SPRTN|p.R163Q|1|0.23|ENSG00000010072|chr1:231351341-231351341|G/A|missense_variant SPRTN|p.R163Q|1|0.23|ENSG00000010072|chr1:231351341-231351341|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 757.8286743164062 2 757.326379 1512.6382 0.090923 6.8858E-05 -0.9747 -0.00073817 -0.88378 -0.00066931 757.3253767969304 54.024 0.53735 53.557 53.246 53.784 -0.46664 62 26 3 0 0 0 0.73115 1 29167 29167 1.3295 0.87119 1 3570700 18652 30173 12836 13066 22043 22043 -0.09760895912313572 HDEWCYDQVRF 11 Unmodified _HDEWCYDQVRF_ 0 0 0 REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF REV__ENST00000520364.1_1_6:109309715-109314184:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 749.315185546875 2 749.314425 1496.6143 NaN NaN NaN NaN NaN NaN NaN 91.13 1 84.954 84.454 85.454 -6.1757 0 0 0 0.93933 1 60234 60234 2.9952 0.26005 1 + 18653 17667 12837 13067 22044 22044 -0.11414452670351238 HDFDHFRHD 9 Unmodified _HDFDHFRHD_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2620239257812 2 613.260311 1224.50607 0.52404 0.00032137 2.7966 0.001715 3.3206 0.0020364 613.2624839842437 59.682 0.28568 59.682 59.51 59.796 0 19 12 2 0 0 0 0.46501 1 33276 33276 9.3831 1.2276 1 1932200 + 18654 19709 12838 13068 22045 22045 -0.09720456138575173 HDFDHFRHD 9 Unmodified _HDFDHFRHD_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 613.260311 1224.50607 0.52404 0.00032137 2.7966 0.001715 3.3206 0.0020364 613.2624839842437 59.682 0.28568 59.682 59.51 59.796 0 -0.10282 -0.00027547 NaN 9.3831 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1932200 + 18655 19709 12838 13068 -0.09720456138575173 HDGGLDYFEG 10 Unmodified _HDGGLDYFEG_ 0 0 0 ENSG00000157093|ENST00000287748|LYZL4 ENSG00000157093|ENST00000287748|LYZL4 ENSG00000157093|ENST00000287748|LYZL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.4894714355469 3 370.489328 1108.44615 NaN NaN NaN NaN NaN NaN NaN 40.576 1 40.576 40.076 41.076 0 0 0 0 0.97302 1 21819 21819 1.7423 0.14999 1 18656 6498 12839 13069 22046 22046 -0.1037319159247545 HDGQQRYQQ 9 Unmodified _HDGQQRYQQ_ 0 0 0 ENST00000430246.6_1_14:21702260-21731069:-|nuORF;ENST00000554891.5_1_14:21702260-21702931:-|nuORF;ENST00000554969.5_1_14:21702260-21731833:-|nuORF;ENST00000557768.1_1_14:21702260-21731509:-|nuORF;ENST00000555137.5_1_14:21702260-21704601:-|nuORF;ENST00000555883.5_1_14:21702257-21737553:-|nuORF;ENST00000420743.6_1_14:21702260-21731833:-|nuORF;ENST00000554383.5_3_14:21702260-21737544:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF;ENST00000554383.5_3_14:21702260-21737544:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1781311035156 3 387.179487 1158.51663 -0.63433 -0.0002456 -0.40581 -0.00015712 -1.0401 -0.00040272 387.17941046279356 14.917 0.41479 14.917 14.655 15.07 0 291 112 3 0 0 0 0.61381 1 6994 6994 0.23584 0 1 4351800 18657 13234;15210 12840 13070 22047 22047 -0.05628473484148344 HDKFRRRAEEL 11 Unmodified _HDKFRRRAEEL_ 0 0 0 REV__nc|ENSG00000141279|P55786-2|NPEPPS;REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.9496765136719 4 364.94965 1455.76949 -0.39962 -0.00014584 -0.11271 -4.1135E-05 -0.51233 -0.00018698 364.9496699488054 20.364 0.13705 20.393 20.281 20.418 0.028357 9 7 2 0 0 0 0.74096 1 10292 10292 0.40827 0 1 1005100 + 18658 20524;28441 12841 13071 22048 22048 0.059839592463049485 HDKMKMQL 8 Unmodified _HDKMKMQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7622680664062 2 515.762255 1029.50996 -0.32415 -0.00016719 0.25409 0.00013105 -0.070066 -3.6137E-05 515.7625394789854 60.967 0.3064 60.478 60.291 60.598 -0.48932 20 14 2 0 0 0 0.55032 1 33192 33192 30.225 0 1 7001500 18659 8367 12842 13072 22049 22049 -0.0036182596072649176 HDKMSRSIGSF 11 Unmodified _HDKMSRSIGSF_ 0 0 0 REV__ENST00000410085.5_1_7:143053645-143056840:-|nuORF REV__ENST00000410085.5_1_7:143053645-143056840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.208740234375 3 422.208278 1263.60301 0.69713 0.00029433 0.65621 0.00027706 1.3533 0.00057139 422.2085364009255 57.038 0.18004 56.972 56.898 57.078 -0.066036 15 8 2 0 0 0 0.71341 1 31064 31064 1.2148 0 1 4057800 + 18660 26708 12843 13073 22050 22050 -0.01825229973792375 HDKYERYLRFT 11 Unmodified _HDKYERYLRFT_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2638854980469 3 509.92828 1526.76301 0.83152 0.00042402 1.1475 0.00058515 1.979 0.0010092 509.928721918236 19.495 0.15794 16.839 16.699 16.857 -2.6564 27 16 2 0 0 0 0.70147 1 10288 10288 4.1166 0 1 9768900 + 18661 17605 12844 13074 22051 22051 0.020700212948668195 HDMFTSGPY 9 Unmodified _HDMFTSGPY_ 0 0 0 REV__nc|ENSG00000131473|P53396-3|ACLY REV__nc|ENSG00000131473|P53396-3|ACLY MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7190551757812 2 527.718567 1053.42258 1.1345 0.00059869 0.23913 0.00012619 1.3736 0.00072489 527.7185731645019 34.178 0.43336 30.192 29.946 30.379 -3.9853 39 23 2 0 0 0 0.2001 1 19657 19657 23.148 5.0021 1 31076000 + 18662 19794 12845 13075 22052 22052 -0.10199328630642412 HDMFTSGPY 9 Unmodified _HDMFTSGPY_ 0 0 0 REV__nc|ENSG00000131473|P53396-3|ACLY REV__nc|ENSG00000131473|P53396-3|ACLY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.718567 1053.42258 -0.44353 -0.00023406 0.10695 5.6441E-05 -0.33657 -0.00017762 527.7184963890967 30.272 0.16211 30.272 30.181 30.343 0 0.039979 -0.00011915 NaN 23.148 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 557950 + 18663 19794 12845 13075 -0.10199328630642412 HDMFTSGPY 9 Unmodified _HDMFTSGPY_ 0 0 0 REV__nc|ENSG00000131473|P53396-3|ACLY REV__nc|ENSG00000131473|P53396-3|ACLY MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 527.718567 1053.42258 1.1345 0.00059869 0.23913 0.00012619 1.3736 0.00072489 527.7185731645019 34.178 0.43336 30.192 29.946 30.379 -3.9853 -0.039979 2.0358E-05 NaN 23.148 39 23 2 NaN NaN NaN NaN 0 NaN NaN 0 31076000 + 18664 19794 12845 13075 -0.10199328630642412 HDPRCIDY 8 Unmodified _HDPRCIDY_ 0 0 0 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7252502441406 2 509.724184 1017.43381 -0.2914 -0.00014853 0.9563 0.00048745 0.6649 0.00033892 509.7246676171295 51.632 0.24348 51.198 51.061 51.305 -0.43367 31 12 4 0 0 0 0.78849 1 27812 27812 9.3474 4.1168 1 5050000 + 18665 17647 12846 13076 22053 22053 -0.07420506536527682 HDPWSSMNCY 10 Unmodified _HDPWSSMNCY_ 0 0 0 REV__ENST00000478553.1_1_20:4762747-4762804:-|nuORF REV__ENST00000478553.1_1_20:4762747-4762804:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 620.2321166992188 2 620.231516 1238.44848 NaN NaN NaN NaN NaN NaN NaN 90.37 1 84.194 83.694 84.694 -6.1757 0 0 0 0.95103 1 59690 59690 5.7319 1.4026 1 + 18666 27638 12847 13077 22054 22054 -0.16120802450632254 HDQMCKDLA 9 Unmodified _HDQMCKDLA_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MSMS AL20221201_MKP_PDAC_01 4 353.8754272460938 3 354.156526 1059.44775 NaN NaN NaN NaN NaN NaN NaN 15.483 1 12.956 12.456 13.456 -2.5273 0 0 0 0.85525 1 7947 7947 0.86438 0.087843 1 + 18667 16943 12848 13078 22055 22055 -0.0795959709971612 HDRQLQCGF 9 Unmodified _HDRQLQCGF_ 0 0 0 REV__ENST00000478412.1_1_13:47254285-47255964:+|nuORF REV__ENST00000478412.1_1_13:47254285-47255964:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7822265625 2 552.256182 1102.49781 NaN NaN NaN NaN NaN NaN NaN 88.338 1 87.834 87.334 88.334 -0.50423 0 0 0 0.82396 1 48315 48315 4.756 1.8668 1 + 18668 27636 12849 13079 22056 22056 -0.049337263795678155 HDRSTRPL 8 Unmodified _HDRSTRPL_ 0 0 0 nc|ENSG00000173818|Q8N8Q3-4|ENDOV;nc|ENSG00000173818|Q8N8Q3-5|ENDOV;ENST00000521330.6_1_17:78388994-78402256:+|nuORF;nc|ENSG00000173818|Q8N8Q3-2|ENDOV;nc|ENSG00000173818|Q8N8Q3-3|ENDOV;ENSG00000173818|ENST00000518137|ENDOV;nc|ENSG00000173818|Q8N8Q3-6|ENDOV;nc|ENSG00000173818|Q8N8Q3-7|ENDOV nc|ENSG00000173818|Q8N8Q3-4|ENDOV nc|ENSG00000173818|Q8N8Q3-4|ENDOV MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2644653320312 2 491.264865 980.515176 NaN NaN NaN NaN NaN NaN NaN 14.595 1 14.564 14.064 15.064 -0.030868 0 0 0 0.97444 1 7111 7111 0.79363 0 1 18669 8366 12850 13080 22057 22057 0.024139372177387486 HDSFHTDAIH 10 Unmodified _HDSFHTDAIH_ 0 0 0 REV__ENSG00000121864|ENST00000496856|ZNF639 REV__ENSG00000121864|ENST00000496856|ZNF639 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.84375 3 393.844105 1178.51048 0.43318 0.00017061 -1.1925 -0.00046967 -0.75936 -0.00029907 393.8438673488379 49.713 0.41568 49.713 49.51 49.926 0 66 18 5 0 0 0 0.5905 2 27334 27334;27442 6.6304 1.3335 1 47343000 + 18670 19316 12851 13081 22058;22059 22058 -0.0716299171567698 HDSFHTDAIH 10 Unmodified _HDSFHTDAIH_ 0 0 0 REV__ENSG00000121864|ENST00000496856|ZNF639 REV__ENSG00000121864|ENST00000496856|ZNF639 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8441772460938 3 393.844105 1178.51048 0.86168 0.00033937 -1.189 -0.00046829 -0.32733 -0.00012892 393.84386117472496 50.226 0.38467 49.834 49.607 49.992 -0.3923 70 18 5 0 0 0 0.6606 1 27060 27060 3.8763 0 1 37974000 + 18671 19316 12851 13081 22060 22060 -0.0716299171567698 HDSFHTDAIH 10 Unmodified _HDSFHTDAIH_ 0 0 0 REV__ENSG00000121864|ENST00000496856|ZNF639 REV__ENSG00000121864|ENST00000496856|ZNF639 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8441162109375 3 393.844105 1178.51048 1.0095 0.00039758 -1.2811 -0.00050456 -0.27162 -0.00010698 393.84381794018753 49.878 0.32154 49.829 49.645 49.967 -0.048824 38 15 4 0 0 0 0.6606 1 26968 26968 3.8763 0 1 2379200 + 18672 19316 12851 13081 22061 22061 -0.0716299171567698 HDSFVVTHF 9 Unmodified _HDSFVVTHF_ 0 0 0 REV__ENST00000361354.8_1_2:183790248-183790371:-|nuORF REV__ENST00000361354.8_1_2:183790248-183790371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.761474609375 2 544.761623 1087.50869 -0.29829 -0.0001625 0.57593 0.00031374 0.27764 0.00015125 544.7619713615818 33.367 0.15926 33.367 33.243 33.402 0 13 7 2 0 0 0 0.10734 1 17481 17481 32.305 3.8186 1 2357600 + 18673 25921 12852 13082 22062 22062 -0.03156000733633846 HDSSALSNSF 10 Unmodified _HDSSALSNSF_ 0 0 0 nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF nc|ENSG00000104946|Q9HA65-3|TBC1D17 nc|ENSG00000104946|Q9HA65-3|TBC1D17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7363891601562 2 532.735803 1063.45705 0.2181 0.00011619 -0.73706 -0.00039266 -0.51896 -0.00027647 532.7358795385145 79.631 0.40465 79.686 79.445 79.849 0.05497 30 15 3 0 0 0 0.67033 1 43999 43999 6.2058 0.97511 1 2183500 18674 2261 12853 13083 22063 22063 -0.07213789218167221 HDSYWQSC 8 Unmodified _HDSYWQSC_ 0 0 0 ENSG00000178385|ENST00000427836|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3 ENSG00000178385|ENST00000427836|PLEKHM3 ENSG00000178385|ENST00000427836|PLEKHM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.1918334960938 2 513.192716 1024.37088 0.77303 0.00039671 0.84591 0.00043411 1.6189 0.00083083 513.1930270536932 54.731 0.34709 54.731 54.505 54.852 0 42 14 4 0 0 0 0.80383 1 30339 30339 4.3292 0.73274 1 7535300 18675 8749 12854 13084 22064 22064 -0.14033072324536988 HDTFRVEF 8 Unmodified _HDTFRVEF_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7525024414062 2 525.753798 1049.49304 0.69444 0.0003651 -2.5886 -0.001361 -1.8942 -0.00099587 525.7519349729158 47.374 0.25925 47.374 47.212 47.471 0 21 11 2 0 0 0 0.44629 1 25926 25926 39.957 7.6518 1 4500000 18676 2322;4803;16212 12855 13085 22065 22065 -0.029722872506681597 HDTFVEAEPC 10 Unmodified _HDTFVEAEPC_ 0 0 0 REV__nc|ENSG00000115109|Q9HCM4-4|EPB41L5 REV__nc|ENSG00000115109|Q9HCM4-4|EPB41L5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2431030273438 2 574.239864 1146.46517 0.19181 0.00011014 0.91268 0.0005241 1.1045 0.00063424 574.2405078350477 52.34 0.53344 52.34 52.103 52.636 0 64 23 4 0 0 0 0.63399 1 29007 29007 9.3831 0.035688 1 24190000 + 18677 29585 12856 13086 22066 22066 -0.10219978293071108 HDVEYASV 8 Unmodified _HDVEYASV_ 0 0 0 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 MSMS AL20221201_MKP_PDAC_01 4 460.2098693847656 2 460.211432 918.408311 NaN NaN NaN NaN NaN NaN NaN 17.647 1 15.06 14.56 15.56 -2.5866 0 0 0 0.90769 1 9246 9246 18.135 4.6271 1 + 18678 20780 12857 13087 22067 22067 -0.054156577872845446 HDVHFPGHTA 10 Unmodified _HDVHFPGHTA_ 0 0 0 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.8670349121094 3 373.177307 1116.51009 1.7435 0.00065063 -2.7497 -0.0010261 -1.0062 -0.0003755 373.1762780684813 21.282 0.17333 18.57 18.452 18.625 -2.7125 16 10 2 0 0 0 0.23047 1 11387 11387 14.957 11.37 1 4225500 18679 16135 12858 13088 22068 22068 -0.04350366644848691 HDVKDVLDSV 10 Unmodified _HDVKDVLDSV_ 0 0 0 ENSG00000161634|ENST00000293371|DCD ENSG00000161634|ENST00000293371|DCD ENSG00000161634|ENST00000293371|DCD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1963195800781 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 26.932 1 26.932 26.432 27.432 0 0 0 0 0.97302 1 13861 13861 1.7423 0.54893 1 18680 6798 12859 13089 22069 22069 0.008842164011412024 HDVTKKTIL 9 Unmodified _HDVTKKTIL_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5455017089844 3 352.213358 1053.61824 NaN NaN NaN NaN NaN NaN NaN 13.264 1 13.273 12.773 13.773 0.0096512 0 0 0 0.86004 1 6542 6542 0.26902 0.26902 1 + 18681 17225 12860 13090 22070 22070 0.09358004885712035 HDWPPWCLL 9 Unmodified _HDWPPWCLL_ 0 0 0 REV__ENST00000555697.1_2_14:21571277-21571436:-|nuORF REV__ENST00000555697.1_2_14:21571277-21571436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5209045410156 3 389.519905 1165.53789 -0.46887 -0.00018263 2.4371 0.0009493 1.9682 0.00076667 389.52110464786307 25.206 0.17329 25.206 25.087 25.26 0 10 8 2 0 0 0 0.58466 1 12922 12922 1.1933 0 1 444270 + 18682 28772 12861 13091 22071 22071 -0.038261797089944594 HDWQDFCL 8 Unmodified _HDWQDFCL_ 0 0 0 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2194213867188 2 532.218734 1062.42292 0.15902 8.4634E-05 0.92636 0.00049302 1.0854 0.00057766 532.2192637167728 65.34 0.84126 64.856 64.448 65.289 -0.48428 120 38 4 0 0 0 0.80232 1 35593 35593 5.2307 0.47466 1 8659900 + 18683 17881 12862 13092 22072 22072 -0.10579908910813174 HDYALPVF 8 Unmodified _HDYALPVF_ 0 0 0 ENSG00000106302|ENST00000223026|HYAL4 ENSG00000106302|ENST00000223026|HYAL4 ENSG00000106302|ENST00000223026|HYAL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2429504394531 2 481.242535 960.470518 NaN NaN NaN NaN NaN NaN NaN 64.147 1 63.661 63.161 64.161 -0.48512 0 0 0 0.9706 1 34997 34997 6.3541 0.59368 1 18684 2414 12863 13093 22073 22073 -0.011298866482775338 HDYEWGQSC 9 Unmodified _HDYEWGQSC_ 0 0 0 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 REV__nc|ENSG00000137204|Q9Y694-3|SLC22A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7088012695312 2 562.708731 1123.40291 -0.031254 -1.7587E-05 0.45948 0.00025855 0.42823 0.00024097 562.7091974852908 51.933 0.32569 51.933 51.777 52.103 0 39 14 4 0 0 0 0.52844 1 28689 28689 5.7319 0.43497 1 11541000 + 18685 20222 12864 13094 22074 22074 -0.15385704641403208 HEAHLQRL 8 Unmodified _HEAHLQRL_ 0 0 0 ENSG00000183798|ENST00000332312|EMILIN3 ENSG00000183798|ENST00000332312|EMILIN3 ENSG00000183798|ENST00000332312|EMILIN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.747802734375 2 502.275232 1002.53591 0.11858 5.9558E-05 -2.6732 -0.0013427 -2.5546 -0.0012831 502.273688296745 35.49 0.21414 35.49 35.38 35.594 0 15 10 2 0 0 0 8.7369 1 18745 18745 5.2307 1.2863 1 3221900 18686 9199 12865 13095 22075 22075 0.03474527597404631 HEAIETDTAA 10 Unmodified _HEAIETDTAA_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2451171875 2 529.24346 1056.47237 0.87328 0.00046218 -1.6527 -0.0008747 -0.77945 -0.00041252 529.2424189831086 79.542 0.34602 79.053 78.889 79.235 -0.48933 67 14 7 0 0 0 0.66569 1 43542 43542 6.7232 0 1 4876700 18687 1020 12866 13096 22076 22076 -0.05360922421004943 HEAIETDTAA 10 Unmodified _HEAIETDTAA_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.24346 1056.47237 0.36982 0.00019572 -0.73349 -0.0003882 -0.36367 -0.00019247 529.2425002517595 78.935 0.21634 78.99 78.913 79.13 0.05497 -0.031334 0.00052781 NaN 6.7232 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1382500 18688 1020 12866 13096 -0.05360922421004943 HEALEAADHL 10 Unmodified _HEALEAADHL_ 0 0 0 ENSG00000151005|ENST00000280605|TKTL2 ENSG00000151005|ENST00000280605|TKTL2 ENSG00000151005|ENST00000280605|TKTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2675170898438 2 553.26727 1104.51999 1.1798 0.00065274 -0.23861 -0.00013201 0.94119 0.00052073 553.2670898055369 20.67 0.48174 17.977 17.723 18.205 -2.693 103 29 4 0 0 0 0.22237 1 10930 10930 30.637 0 1 58545000 18689 6084 12867 13097 22077 22077 -0.028092234301539065 HEATAPHPE 9 Unmodified _HEATAPHPE_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7281494140625 2 494.727781 987.441008 0.10222 5.0572E-05 -0.16923 -8.3721E-05 -0.067006 -3.315E-05 494.72769157744625 25.011 0.49992 22.128 21.871 22.371 -2.8831 102 45 3 0 0 0 0.070838 2 13577 13577;13684 39.957 5.8549 1 67951000 + 18690 17027;28463 12868 13098 22078;22079 22078 -0.053214506644280846 HECASFYHF 9 Unmodified _HECASFYHF_ 0 0 0 REV__ENST00000483600.1_1_2:100726370-100726484:-|nuORF REV__ENST00000483600.1_1_2:100726370-100726484:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.3038330078125 2 570.732009 1139.44946 0.6427 0.00036681 -0.53826 -0.0003072 0.10444 5.9607E-05 570.7334254245923 44.96 0.47609 40.108 39.834 40.31 -4.852 64 32 4 0 0 0 0.19298 1 27638 27638 13.508 1.8676 1 47374000 + 18691 27744 12869 13099 22080 22080 -0.114682200194693 HECDEVMKETY 11 Unmodified _HECDEVMKETY_ 0 0 0 REV__ENSG00000090863|ENST00000422840|GLG1 REV__ENSG00000090863|ENST00000422840|GLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.8566589355469 3 461.856694 1382.54825 0.98771 0.00045618 -0.25915 -0.00011969 0.72856 0.00033649 462.1911953556086 38.758 0.21497 38.758 38.62 38.834 0 22 9 3 0 0 0 0.71728 1 20743 20743 2.6312 1.3016 1 3146800 + 18692 17872 12870 13100 22081 22081 -0.1277202962737647 HECTRCKGPFL 11 Unmodified _HECTRCKGPFL_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.807861328125 2 645.807725 1289.6009 0.26698 0.00017242 -0.20424 -0.0001319 0.062743 4.052E-05 645.8080416742071 19.451 0.10004 19.459 19.414 19.514 0.0078487 8 5 2 0 0 0 0.71341 1 9906 9906 2.9952 0.93549 1 642290 18693 5100 12871 13101 22082 22082 -0.03231981983276455 HEDGECWVY 9 Unmodified _HEDGECWVY_ 0 0 0 nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2190551757812 2 569.218931 1136.42331 0.26375 0.00015013 -0.2593 -0.0001476 0.0044455 2.5305E-06 569.2188999651277 62.279 1.1684 62.279 61.751 62.92 0 173 60 4 0 0 0 0.54444 3 34651 34651;34863;34978 4.756 4.756 1 16475000 18694 3339 12872 13102 22083;22084;22085 22083 -0.13944533981589302 HEDRPIGACL 10 Unmodified _HEDRPIGACL_ 0 0 0 REV__ENSG00000099715|ENST00000698851|PCDH11Y REV__ENSG00000099715|ENST00000698851|PCDH11Y MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2755126953125 2 555.771665 1109.52878 0.52873 0.00029385 -3.047 -0.0016934 -2.5183 -0.0013996 555.7705813712541 54.798 0.44062 54.731 54.56 55.001 -0.066936 37 21 2 0 0 0 0.22667 1 29851 29851 10.824 0 1 5456800 + 18695 17982 12873 13103 22086 22086 -0.02160573065339122 HEEAMQFFM 9 Unmodified _HEEAMQFFM_ 0 0 0 REV__ENST00000398073.6_1_12:58215142-58215220:-|nuORF REV__ENST00000398073.6_1_12:58215142-58215220:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.4962158203125 3 390.49666 1168.46815 0.45263 0.00017675 0.67135 0.00026216 1.124 0.00043891 390.4968051310829 90.845 0.42444 90.35 90.187 90.611 -0.49457 84 30 3 0 0 0 0.55144 1 49626 49626 4.897 0.70751 1 6785300 + 18696 26555 12874 13104 22087 22087 -0.10934426439916933 HEEEERKRKEL 11 Unmodified _HEEEERKRKEL_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENST00000469843.1_1_2:233697632-233697839:+|nuORF nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.8865356445312 2 741.886604 1481.75865 NaN NaN NaN NaN NaN NaN NaN 99.303 1 99.303 98.803 99.803 0 0 0 0 0.9435 1 54826 54826 0 0 1 18697 10242 12875 13105 22088 22088 0.03704512081321809 HEEEGENEITI 11 Unmodified _HEEEGENEITI_ 0 0 0 nc|ENSG00000078053|P49418-2|AMPH;ENSG00000078053|ENST00000356264|AMPH nc|ENSG00000078053|P49418-2|AMPH nc|ENSG00000078053|P49418-2|AMPH MSMS AL20221201_MKP_PDAC_01 4 434.19677734375 3 433.86149 1298.56264 NaN NaN NaN NaN NaN NaN NaN 15.042 1 12.515 12.015 13.015 -2.5273 0 0 0 0.77961 1 7686 7686 10.315 4.1234 1 18698 1233 12876 13106 22089 22089 -0.07469917883213384 HEEHWVQI 8 Unmodified _HEEHWVQI_ 0 0 0 REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8433227539062 3 359.841924 1076.50394 1.778 0.0006398 -0.55377 -0.00019927 1.2242 0.00044054 359.8424000181735 95.256 0.68987 89.08 88.677 89.367 -6.1757 70 38 3 0 0 0 0.67481 1 62983 62983 20.454 8.213 1 8387700 + 18699 20861 12877 13107 22090 22090 -0.031248848763880233 HEELKRKL 8 Unmodified _HEELKRKL_ 0 0 0 REV__ENST00000592259.1_1_19:12876502-12876532:-|nuORF REV__ENST00000592259.1_1_19:12876502-12876532:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5457763671875 3 351.545219 1051.61383 0.82565 0.00029025 0.12158 4.2742E-05 0.94724 0.000333 351.54521643422123 26.072 0.2409 23.121 23.003 23.244 -2.9511 24 14 2 0 0 0 0.76266 1 14340 14340 11.64 0 1 9459400 + 18700 17935 12878 13108 22091 22091 0.09008540462787096 HEELTYIKI 9 Unmodified _HEELTYIKI_ 0 0 0 REV__ENSG00000172497|ENST00000307624|ACOT12 REV__ENSG00000172497|ENST00000307624|ACOT12 MSMS AL20221201_MKP_PDAC_01 4 573.314208984375 2 573.313689 1144.61282 NaN NaN NaN NaN NaN NaN NaN 56.261 1 50.284 49.784 50.784 -5.9769 0 0 0 0.43483 1 35886 35886 18.146 1.0335 1 + 18701 22655 12879 13109 22092 22092 0.046302813032070844 HEEMMDSSTF 10 Unmodified _HEEMMDSSTF_ 0 0 0 NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1537170410156 3 405.154851 1212.44272 -1.3764 -0.00055764 -0.99833 -0.00040448 -2.3747 -0.00096212 405.1544434917807 32.422 0.24544 32.422 32.316 32.561 0 54 15 4 0 0 0 0.69064 1 16916 16916 1.9064 1.2087 1 74910000 18702 16670 12880 13110 22093 22093 -0.15499945753003885 HEEMMDSSTF 10 Unmodified _HEEMMDSSTF_ 0 0 0 NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant NIPBL|p.P1190H|1|0.18|ENSG00000164190|chr5:37000883-37000883|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.1551208496094 3 405.154851 1212.44272 0.55998 0.00022688 -0.93407 -0.00037844 -0.37409 -0.00015157 405.15450894666054 36.368 0.53127 32.175 31.948 32.479 -4.1928 99 32 4 0 0 0 0.69064 2 21157 21157;21277 1.9064 0.1641 1 200060000 18703 16670 12880 13110 22094;22095 22094 -0.15499945753003885 HEEMRTEME 9 Unmodified _HEEMRTEME_ 0 0 0 ENSG00000050730|ENST00000057513|TNIP3;nc|ENSG00000050730|Q96KP6-2|TNIP3;nc|ENSG00000050730|Q96KP6-3|TNIP3 ENSG00000050730|ENST00000057513|TNIP3 ENSG00000050730|ENST00000057513|TNIP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7587890625 2 596.24208 1190.46961 0.50659 0.00030205 1.6969 0.0010118 2.2035 0.0013138 596.2434348748319 36.43 0.33802 36.43 36.29 36.628 0 31 16 3 0 0 0 0.21473 1 19241 19241 4.3292 0 1 4490200 18704 726 12881 13111 22096 22096 -0.11800837141800002 HEFDGDEQF 9 Unmodified _HEFDGDEQF_ 0 0 0 nc|ENSG00000237541|P01909|HLA-DQA1;ENST00000482745.5_1_6:32607639-32610538:+|nuORF;ENST00000460633.1_1_6:32605235-32610161:+|nuORF;ENSG00000196735|ENST00000343139|HLA-DQA1 nc|ENSG00000237541|P01909|HLA-DQA1 nc|ENSG00000237541|P01909|HLA-DQA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1497497558594 3 375.149082 1122.42542 1.7072 0.00064045 -1.721 -0.00064563 -0.013801 -5.1774E-06 375.14865713741744 37.085 0.39807 32.801 32.557 32.955 -4.2835 54 24 3 0 0 0 0.58466 1 21690 21690 1.1933 0 1 16950000 18705 16565 12882 13112 22097 22097 -0.13089781972121273 HEFHSSNQL 9 Unmodified _HEFHSSNQL_ 0 0 0 REV__nc|ENSG00000168615|Q13443-2|ADAM9 REV__nc|ENSG00000168615|Q13443-2|ADAM9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7755737304688 2 549.751787 1097.48902 0.62814 0.00034532 4.4264 0.0024334 5.0546 0.0027788 549.7539839604947 40.547 0.1887 40.244 40.148 40.337 -0.30304 13 8 2 0 0 0 0.18521 1 21403 21403 16.942 1.0951 1 1503400 + 18706 22329 12883 13113 22098 22098 -0.055823767443826 HEFHSSNQL 9 Unmodified _HEFHSSNQL_ 0 0 0 REV__nc|ENSG00000168615|Q13443-2|ADAM9 REV__nc|ENSG00000168615|Q13443-2|ADAM9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 549.751787 1097.48902 0.41563 0.00022849 6.365 0.0034992 6.7807 0.0037277 549.7553903740271 40.243 0.25206 40.248 40.108 40.36 0.0050583 0.00198 0.00016656 NaN 16.942 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 5034400 + 18707 22329 12883 13113 -0.055823767443826 HEFINKDQLF 10 Unmodified _HEFINKDQLF_ 0 0 0 REV__ENSG00000115464|ENST00000398571|USP34 REV__ENSG00000115464|ENST00000398571|USP34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8881225585938 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 27.381 1 27.335 26.835 27.835 -0.046408 0 0 0 0.97302 1 14110 14110 1.7423 0.96574 1 + 18708 18983 12884 13114 22099 22099 0.0072018456346540916 HEFLFSFQL 9 Unmodified _HEFLFSFQL_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2;ENST00000596105.2_1_19:18119032-18119587:+|nuORF;ENST00000593460.1_1_19:18119032-18119587:+|nuORF nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MSMS AL20221201_MKP_PDAC_01 4 584.29541015625 2 584.295299 1166.57605 NaN NaN NaN NaN NaN NaN NaN 46.132 1 41.177 40.677 41.677 -4.9549 0 0 0 0.29524 1 28444 28444 25.399 4.9848 1 18709 2345 12885 13115 22100 22100 -0.0005797052267553227 HEFSVPVILP 10 Unmodified _HEFSVPVILP_ 0 0 0 REV__ENST00000344099.3_1_19:19821976-19822144:-|nuORF REV__ENST00000344099.3_1_19:19821976-19822144:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5115356445312 3 379.881608 1136.623 -0.027117 -1.0301E-05 -3.041 -0.0011552 -3.0682 -0.0011655 379.88022723918266 32.09 0.2287 31.961 31.866 32.095 -0.12915 10 8 2 0 0 0 0.23767 1 16696 16696 6.1918 1.2948 1 733690 + 18710 25738 12886 13116 22101 22101 0.06014889028483594 HEGEFTCH 8 Unmodified _HEGEFTCH_ 0 0 0 nc|ENSG00000142512|Q96LC7-8|SIGLEC10;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10;ENST00000602139.5_1_19:50474430-50476369:+|nuORF;nc|ENSG00000161643|A6NMB1|SIGLEC16;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000161640|Q96RL6-2|SIGLEC11;ENSG00000161640|ENST00000447370|SIGLEC11 nc|ENSG00000142512|Q96LC7-8|SIGLEC10 nc|ENSG00000142512|Q96LC7-8|SIGLEC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.188232421875 2 480.187434 958.360315 1.1573 0.00055571 0.32748 0.00015725 1.4848 0.00071296 480.1876645829819 50.709 0.57165 45.06 44.744 45.316 -5.649 149 35 7 0 0 0 0.80232 1 31954 31954 5.2307 5.2307 1 312790000 18711 5419 12887 13117 22102 22102 -0.12053054978991895 HEGLTEENF 9 Unmodified _HEGLTEENF_ 0 0 0 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2384033203125 2 538.238178 1074.4618 0.32838 0.00017675 -1.2204 -0.00065688 -0.89204 -0.00048013 538.2373227251203 89.869 0.41416 89.367 89.172 89.586 -0.50172 46 21 3 0 0 0 0.58865 1 49081 49081 2.0598 1.2661 1 1232400 18712 1079 12888 13118 22103 22103 -0.07244905075435781 HEGPEGPL 8 Unmodified _HEGPEGPL_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MSMS AL20221201_MKP_PDAC_01 4 418.2014465332031 2 418.200867 834.387182 NaN NaN NaN NaN NaN NaN NaN 51.975 1 46.24 45.74 46.74 -5.7345 0 0 0 0.88073 1 32766 32766 19.439 1.304 1 + 18713 19740 12889 13119 22104 22104 -0.036636230961448746 HEGSFFSAF 9 Unmodified _HEGSFFSAF_ 0 0 0 ENSG00000258986|ENST00000556573|TMEM179;nc|ENSG00000258986|Q6ZVK1-2|TMEM179 ENSG00000258986|ENST00000556573|TMEM179 ENSG00000258986|ENST00000556573|TMEM179 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7280883789062 2 514.727249 1027.43995 0.22588 0.00011626 0.9537 0.00049089 1.1796 0.00060716 514.7276224038216 63.97 0.43763 63.97 63.709 64.147 0 48 17 3 0 0 0 0.28047 2 35640 35640;35741 18.135 7.9102 1 6785900 18714 10821 12890 13120 22105;22106 22105 -0.0726766503332783 HEHDYEVVF 9 Unmodified _HEHDYEVVF_ 0 0 0 nc|ENSG00000169224|Q5JQS6-2|GCSAML;ENSG00000169224|ENST00000366488|GCSAML nc|ENSG00000169224|Q5JQS6-2|GCSAML nc|ENSG00000169224|Q5JQS6-2|GCSAML MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1770324707031 3 392.176972 1173.50909 -0.058292 -2.2861E-05 0.39173 0.00015363 0.33344 0.00013077 392.17694397441704 40.12 0.44398 40.12 39.832 40.276 0 36 21 2 0 0 0 0.54444 1 21568 21568 2.7352 0.82882 1 2256600 18715 7852 12891 13121 22107 22107 -0.07072625804448762 HEICTVGKCF 10 Unmodified _HEICTVGKCF_ 0 0 0 ENST00000478965.1_1_5:94161779-94162088:-|nuORF ENST00000478965.1_1_5:94161779-94162088:-|nuORF ENST00000478965.1_1_5:94161779-94162088:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5111083984375 3 379.512422 1135.51544 -0.74565 -0.00028298 -1.931 -0.00073283 -2.6766 -0.0010158 379.5116046996945 30.536 0.20628 30.536 30.422 30.628 0 15 9 2 0 0 0 0.69064 1 15865 15865 1.9064 0 1 2151900 18716 14028 12892 13122 22108 22108 -0.046901471689125174 HEIEAKKMYF 10 Unmodified _HEIEAKKMYF_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849792480469 3 432.553274 1294.63799 0.016641 7.1981E-06 3.1214 0.0013502 3.138 0.0013574 432.55616033388736 31.838 1.1041 31.709 31.354 32.459 -0.12915 57 45 2 0 0 0 0.69064 1 16946 16946 1.9064 0.31409 1 48810000 + 18717 21838 12893 13123 22109 22109 0.0024601283414540376 HEILSYIEF 9 Unmodified _HEILSYIEF_ 0 0 0 REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7921142578125 2 575.792589 1149.57063 0.36717 0.00021141 -0.50438 -0.00029042 -0.13722 -7.9009E-05 575.792225102596 77.976 1.0041 77.976 77.712 78.716 0 145 46 6 0 0 0 0.5029 1 43733 43733 7.2892 2.5332 1 216290000 + 18718 28301 12894 13124 22110 22110 0.0018230589485028759 HEIMRSKMT 9 Unmodified _HEIMRSKMT_ 0 0 0 REV__ENSG00000256087|ENST00000221315|ZNF432 REV__ENSG00000256087|ENST00000221315|ZNF432 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7882080078125 2 566.783718 1131.55288 -0.12631 -7.159E-05 4.47 0.0025336 4.3437 0.002462 566.7865794447023 78.374 0.48668 77.888 77.778 78.265 -0.48596 29 21 2 0 0 0 0.17718 1 42968 42968 14.838 3.198 1 2308100 + 18719 24550 12895 13125 22111 22111 -0.007630559033032114 HEKEHWLLI 9 Unmodified _HEKEHWLLI_ 0 0 0 nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2211303710938 3 402.220624 1203.64004 0.70385 0.0002831 0.70755 0.00028459 1.4114 0.00056769 402.2210471660815 50.773 0.20095 50.36 50.214 50.415 -0.41351 17 9 2 0 0 0 0.34999 1 27351 27351 14.405 0 1 1810600 18720 9997 12896 13126 22112 22112 0.046368096342803256 HEKEHWLLI 9 Unmodified _HEKEHWLLI_ 0 0 0 nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2218627929688 3 402.220624 1203.64004 0.98714 0.00039705 0.29059 0.00011688 1.2777 0.00051393 402.22100127748723 50.43 0.38795 50.381 50.127 50.515 -0.048824 51 18 4 0 0 0 0.34999 1 27243 27243 14.405 3.5064 1 5262300 18721 9997 12896 13126 22113 22113 0.046368096342803256 HEKQRMLIEMQ 11 Unmodified _HEKQRMLIEMQ_ 0 0 0 NR1D2|p.R182H|1|0.17|ENSG00000174738|chr3:23962004-23962004|G/A|missense_variant NR1D2|p.R182H|1|0.17|ENSG00000174738|chr3:23962004-23962004|G/A|missense_variant NR1D2|p.R182H|1|0.17|ENSG00000174738|chr3:23962004-23962004|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.3697509765625 2 721.865771 1441.71699 1.0363 0.00074805 1.0918 0.0007881 2.128 0.0015362 721.8667863642183 37.315 0.32335 33.032 32.873 33.196 -4.2835 44 18 3 0 0 0 0.71341 1 21866 21866 2.9952 0.26005 1 17719000 18722 16676 12897 13127 22114 22114 0.013799167967817993 HEKVFEVL 8 Unmodified _HEKVFEVL_ 0 0 0 REV__nc|ENSG00000118729|O14958-2|CASQ2 REV__nc|ENSG00000118729|O14958-2|CASQ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.2487487792969 2 500.776742 999.538931 0.91036 0.00045589 2.2306 0.001117 3.141 0.0015729 500.777781487281 45.716 0.26754 40.762 40.626 40.894 -4.9549 26 17 2 0 0 0 8.7369 1 28122 28122 11.64 3.7301 1 6535700 + 18723 19167 12898 13128 22115 22115 0.03914357931569157 HEKYYTIGH 9 Unmodified _HEKYYTIGH_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1891784667969 3 383.189212 1146.54581 -0.61431 -0.0002354 0.78245 0.00029983 0.16814 6.4429E-05 383.1894827755995 34.65 0.25506 34.65 34.518 34.773 0 40 12 4 0 0 0 0.54444 1 18238 18238 2.7352 0 1 22684000 + 18724 17227 12899 13129 22116 22116 -0.02160329187836396 HEKYYTIGH 9 Unmodified _HEKYYTIGH_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5240783691406 3 383.189212 1146.54581 1.3183 0.00050514 0.14168 5.4289E-05 1.4599 0.00055943 383.1892912428435 39.15 0.37576 34.699 34.538 34.914 -4.4509 61 23 3 0 0 0 0.54444 1 23143 23143 2.7352 0 1 42875000 + 18725 17227 12899 13129 22117 22117 -0.02160329187836396 HEKYYTIGH 9 Unmodified _HEKYYTIGH_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 383.189212 1146.54581 -0.28847 -0.00011054 0.53578 0.00020531 0.24731 9.4767E-05 383.1893209795465 34.819 0.22292 34.627 34.477 34.7 -0.19131 -0.0093457 1.1472E-05 NaN 2.7352 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2324300 + 18726 17227 12899 13129 -0.02160329187836396 HEKYYTIGH 9 Unmodified _HEKYYTIGH_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 383.189212 1146.54581 0.052806 2.0235E-05 0.37273 0.00014283 0.42554 0.00016306 383.1893242531189 34.543 0.10827 34.57 34.52 34.628 0.027401 -0.066378 -0.00017596 NaN 2.7352 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 337500 + 18727 17227 12899 13129 -0.02160329187836396 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1746520996094 3 389.174686 1164.50223 -0.076019 -2.9585E-05 0.46935 0.00018266 0.39333 0.00015307 389.17491096470724 35.77 0.22355 35.77 35.655 35.878 0 35 10 4 0 0 0 0.5029 1 18903 18903 4.5289 0.58447 1 20643000 + + 18728 16830 12900 13130 22118 22118 -0.07344261956632181 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.1748352050781 3 389.174686 1164.50223 -0.17683 -6.8819E-05 -0.26471 -0.00010302 -0.44154 -0.00017184 389.1746078771441 35.647 0.16504 35.672 35.558 35.723 0.024967 17 7 3 0 0 0 0.54444 1 18849 18849 2.7352 0.82882 1 4803100 + + 18729 16830 12900 13130 22119 22119 -0.07344261956632181 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.1747436523438 3 389.174686 1164.50223 0.58875 0.00022912 0.0976 3.7983E-05 0.68635 0.00026711 389.1747257908561 39.996 0.39123 35.467 35.26 35.652 -4.5294 73 33 3 0 0 0 0.5029 1 23868 23868 4.5289 0.58447 1 125290000 + + 18730 16830 12900 13130 22120 22120 -0.07344261956632181 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.1749877929688 3 389.174686 1164.50223 0.89512 0.00034836 0.14679 5.7129E-05 1.0419 0.00040549 389.17480114477286 40.37 1.2378 35.84 35.595 36.833 -4.5294 214 81 4 0 0 0 0.5029 1 24393 24393 4.5289 0 1 83299000 + + 18731 16830 12900 13130 22121 22121 -0.07344261956632181 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.174686 1164.50223 -0.076019 -2.9585E-05 0.46935 0.00018266 0.39333 0.00015307 389.17491096470724 35.77 0.22355 35.77 35.655 35.878 0 0.0097098 0.00042248 NaN 4.5289 35 10 4 NaN NaN NaN NaN 0 NaN NaN 0 20643000 + + 18732 16830 12900 13130 -0.07344261956632181 HEKYYTMGH 9 Unmodified _HEKYYTMGH_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.174686 1164.50223 -0.17683 -6.8819E-05 -0.26471 -0.00010302 -0.44154 -0.00017184 389.1746078771441 35.647 0.16504 35.672 35.558 35.723 0.024967 -0.088666 -0.00043455 NaN 4.5289 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 4803100 + + 18733 16830 12900 13130 -0.07344261956632181 HELAQIDQKL 10 Unmodified _HELAQIDQKL_ 0 0 0 REV__ENSG00000153157|ENST00000283141|SYCP2L REV__ENSG00000153157|ENST00000283141|SYCP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8873901367188 3 398.887422 1193.64044 -0.6216 -0.00024795 1.2668 0.00050531 0.6452 0.00025736 398.88765480465236 17.237 0.23606 17.237 17.123 17.359 0 139 57 3 0 0 0 0.67046 1 8477 8477 6.1918 0.40842 1 1874700 + 18734 21155 12901 13131 22122 22122 0.05136184563457391 HELFAYRG 8 Unmodified _HELFAYRG_ 0 0 0 REV__ENSG00000100218|ENST00000216036|RSPH14 REV__ENSG00000100218|ENST00000216036|RSPH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7495422363281 2 496.751059 991.487565 NaN NaN NaN NaN NaN NaN NaN 78.415 1 77.93 77.43 78.43 -0.48596 0 0 0 0.93587 1 42948 42948 13.508 0 1 + 18735 18027 12902 13132 22123 22123 -0.008519660424894937 HELGHNLG 8 Unmodified _HELGHNLG_ 0 0 0 nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF;ENSG00000140470|ENST00000268070|ADAMTS17;ENSG00000134007|ENST00000256389|ADAM20;nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9;ENST00000550735.6_1_12:112337947-112339324:+|nuORF nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENSG00000134007|ENST00000256389|ADAM20;nc|ENSG00000168615|Q13443-2|ADAM9;ENST00000550735.6_1_12:112337947-112339324:+|nuORF nc|ENSG00000168615|Q13443-2|ADAM9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7199401855469 2 438.719759 875.424964 NaN NaN NaN NaN NaN NaN NaN 24.484 1 24.482 23.982 24.982 -0.0016766 0 0 0 0.93587 1 12513 12513 13.508 1.8676 1 18736 7785;4550;5240;15168 12903 13133 22124 22124 -0.017731121106749015 HELGLSKLF 9 Unmodified _HELGLSKLF_ 0 0 0 REV__ENSG00000173273|ENST00000310430|TNKS REV__ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.29833984375 2 522.297842 1042.58113 0.5503 0.00028742 0.14973 7.8206E-05 0.70003 0.00036562 522.2972165221587 68.884 0.21399 68.91 68.77 68.984 0.025154 19 9 3 0 0 0 0.30202 1 37869 37869 17.113 2.2746 1 2924000 + 18737 22718 12904 13134 22125 22125 0.061543333399413314 HELLMLAC 8 Unmodified _HELLMLAC_ 0 0 0 REV__nc|ENSG00000198062|Q6S545-2|POTEH REV__nc|ENSG00000198062|Q6S545-2|POTEH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7346801757812 2 465.232799 928.451044 -0.11022 -5.1278E-05 -0.096314 -4.4808E-05 -0.20653 -9.6087E-05 465.2327726634621 16.509 0.1596 16.509 16.448 16.607 0 70 45 2 0 0 0 8.7369 1 8108 8108 0.79363 0 1 773080 + 18738 23640 12905 13135 22126 22126 -0.016043022550547903 HELPNTDVTT 10 Unmodified _HELPNTDVTT_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-8|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3370361328125 2 563.772385 1125.53022 0.5073 0.000286 0.46631 0.00026289 0.97361 0.00054889 563.7724773418806 52.933 0.21331 52.482 52.4 52.613 -0.45173 16 10 2 0 0 0 0.23325 1 28672 28672 10.074 0.6908 1 706060 18739 5719 12906 13136 22127 22127 -0.027526604955710354 HELPNTDVTT 10 Unmodified _HELPNTDVTT_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-8|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.772385 1125.53022 1.181 0.00066581 -1.2976 -0.00073154 -0.11659 -6.5729E-05 563.771608206138 52.463 0.23711 52.404 52.309 52.546 -0.058918 -0.038667 -0.0012404 NaN 10.074 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1056800 18740 5719 12906 13136 -0.027526604955710354 HELQSRET 8 Unmodified _HELQSRET_ 0 0 0 ENST00000443546.1_1_6:10414925-10415535:+|nuORF ENST00000443546.1_1_6:10414925-10415535:+|nuORF ENST00000443546.1_1_6:10414925-10415535:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.2477111816406 2 500.246338 998.478122 NaN NaN NaN NaN NaN NaN NaN 14.804 1 12.277 11.777 12.777 -2.5273 0 0 0 0.97444 1 7544 7544 5.2307 0 1 18741 13425 12907 13137 22128 22128 -0.0211777911866875 HELVHMFD 8 Unmodified _HELVHMFD_ 0 0 0 REV__nc|ENSG00000196504|O75400-2|PRPF40A REV__nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.23779296875 2 514.236927 1026.4593 0.29649 0.00015247 1.7264 0.0008878 2.0229 0.0010403 514.2378879680361 97.46 0.26869 97.217 97.045 97.313 -0.24277 20 11 2 0 0 0 0.80722 1 53192 53192 2.3027 0.24298 1 2246900 + 18742 23836 12908 13138 22129 22129 -0.05287032014075521 HEMLSILTD 9 Unmodified _HEMLSILTD_ 0 0 0 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.76220703125 2 529.762975 1057.5114 0.7424 0.0003933 -2.1662 -0.0011476 -1.4238 -0.00075427 529.7623591779598 43.009 0.27927 38.325 38.191 38.47 -4.6846 27 17 2 0 0 0 0.08691 1 26036 26036 36.127 7.0454 1 12009000 + 18743 19583 12909 13139 22130 22130 -0.01505913390974456 HEMMLRSPM 9 Unmodified _HEMMLRSPM_ 0 0 0 REV__ENSG00000146909|ENST00000275820|NOM1 REV__ENSG00000146909|ENST00000275820|NOM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.212646484375 3 377.841773 1130.50349 0.7134 0.00026955 1.0224 0.0003863 1.7358 0.00065586 378.1762639517475 24.691 0.11358 21.808 21.739 21.852 -2.8831 6 5 2 0 0 0 0.21767 1 13439 13439 1.1933 0.41681 1 1538200 + 18744 20853 12910 13140 22131 22131 -0.05654087183734191 HEMRKQTVF 9 Unmodified _HEMRKQTVF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.5358581542969 3 392.537847 1174.59171 -0.49819 -0.00019556 -2.8079 -0.0011022 -3.3061 -0.0012978 392.5363689461554 30.781 0.1821 30.781 30.67 30.852 0 14 8 2 0 0 0 0.54444 1 16023 16023 2.7352 0.64919 1 1865500 + 18745 22751 12911 13141 22132 22132 0.011399927227103035 HEMRKQTVF 9 Unmodified _HEMRKQTVF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.537847 1174.59171 -0.49819 -0.00019556 -2.8079 -0.0011022 -3.3061 -0.0012978 392.5363689461554 30.781 0.1821 30.781 30.67 30.852 0 0.074115 -0.0001057 NaN 2.7352 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1865500 + 18746 22751 12911 13141 0.011399927227103035 HENEESAYY 9 Unmodified _HENEESAYY_ 0 0 0 ENSG00000112077|ENST00000371175|RHAG;nc|ENSG00000112077|Q02094-2|RHAG ENSG00000112077|ENST00000371175|RHAG ENSG00000112077|ENST00000371175|RHAG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1515197753906 3 381.152604 1140.43598 -0.18172 -6.9263E-05 -3.2453 -0.0012369 -3.427 -0.0013062 381.1519085005167 71.745 0.53942 71.745 71.405 71.944 0 30 24 2 0 0 0 0.60664 1 39943 39943 0.96228 0.50394 1 818640 18747 2855 12912 13142 22133 22133 -0.1286179931771585 HENKEDTMKGS 11 Unmodified _HENKEDTMKGS_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.2861938476562 2 638.285334 1274.55611 0.042413 2.7072E-05 0.6896 0.00044016 0.73201 0.00046723 638.2855859290623 77.367 0.78543 77.367 77.068 77.854 0 110 49 3 0 0 0 0.65096 1 42990 42990 15.248 7.093 1 6748100 + 18748 19045 12913 13143 22134 22134 -0.07018134315603675 HENRVSTLRV 10 Unmodified _HENRVSTLRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1960754394531 3 404.226549 1209.65782 NaN NaN NaN NaN NaN NaN NaN 23.204 1 23.216 22.716 23.716 0.012396 0 0 0 0.99248 1 11826 11826 0.62683 0 1 18749 1011 12914 13144 22135 22135 0.0613752488911814 HEPDKFQLGR 10 Unmodified _HEPDKFQLGR_ 0 0 0 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5496520996094 3 409.5474 1225.62037 0.58884 0.00024116 2.9398 0.001204 3.5286 0.0014451 409.88303221521795 57.894 0.17479 57.828 57.735 57.91 -0.066036 16 8 3 0 0 0 0.66569 1 31517 31517 3.5871 1.8448 1 1485900 + 18750 20494 12915 13145 22136 22136 0.016584336235155206 HEPSKTLIT 9 Unmodified _HEPSKTLIT_ 0 0 0 REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF REV__ENST00000542527.6_1_16:22092304-22092481:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.767578125 2 513.284931 1024.55531 -0.25933 -0.00013311 0.18314 9.4004E-05 -0.076192 -3.9108E-05 513.2847202039603 33.389 0.17251 33.389 33.243 33.415 0 12 8 2 0 0 0 0.19891 1 17452 17452 11.64 2.2929 1 1786200 + 18751 28618 12916 13146 22137 22137 0.04401439097682669 HEQEMLTEEPL 11 Unmodified _HEQEMLTEEPL_ 0 0 0 REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF REV__ENST00000540647.5_1_12:132402872-132405903:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 678.311767578125 2 678.311017 1354.60748 0.13969 9.4753E-05 0.011988 8.1313E-06 0.15168 0.00010288 678.3108716526698 74.88 0.17707 74.88 74.763 74.94 0 12 8 2 0 0 0 0.721 1 41656 41656 2.2828 0.95324 1 472050 + 18752 22966 12917 13147 22138 22138 -0.05563810341550379 HEQIHCRHSY 10 Unmodified _HEQIHCRHSY_ 0 0 0 REV__ENST00000396516.6_1_16:11873200-11876320:-|nuORF REV__ENST00000396516.6_1_16:11873200-11876320:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.1996154785156 3 437.200006 1308.57819 0.29425 0.00012865 0.41648 0.00018209 0.71074 0.00031073 437.2002757923696 16.491 0.19147 13.934 13.86 14.052 -2.557 62 28 3 0 0 0 0.69848 1 8515 8515 3.0723 1.1659 1 5905500 + 18753 26509 12918 13148 22139 22139 -0.06375865056497787 HEQLSVAEITN 11 Unmodified _HEQLSVAEITN_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B nc|ENSG00000167552|Q71U36-2|TUBA1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8132934570312 2 620.812042 1239.60953 0.21279 0.00013211 0.18303 0.00011363 0.39582 0.00024573 620.812920748045 40.15 0.1654 40.15 40.049 40.214 0 11 7 2 0 0 0 0.39704 1 21588 21588 25.997 16.614 1 1920100 18754 3708;4027;16164 12919 13149 22140 22140 -0.0006901354142883065 HEQTDGATLH 10 Unmodified _HEQTDGATLH_ 0 0 0 nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64 nc|ENSG00000020256|Q9NTW7-6|ZFP64 nc|ENSG00000020256|Q9NTW7-6|ZFP64 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.252197265625 2 554.754527 1107.4945 0.20656 0.00011459 -1.0716 -0.00059445 -0.865 -0.00047987 555.2554820412257 53.275 0.31753 53.212 53.044 53.361 -0.063423 37 15 3 0 0 0 0.22667 1 28846 28846 10.824 2.9138 1 5330500 18755 521 12920 13150 22141 22141 -0.05494697952576644 HEQTKARQV 9 Unmodified _HEQTKARQV_ 0 0 0 REV__nc|ENSG00000162302|O75676-2|RPS6KA4 REV__nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8663330078125 3 366.200111 1095.5785 -0.015609 -5.716E-06 0.81626 0.00029891 0.80065 0.0002932 366.20054630796596 4.0129 0.18888 4.0066 3.9601 4.149 -0.0062971 134 75 2 0 0 0 0.21874 1 2064 2064 1.1933 0 1 2821500 + 18756 21632 12921 13151 22142 22142 0.034538779349986726 HEQVEDWQN 9 Unmodified _HEQVEDWQN_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD REV__ENSG00000198947|ENST00000357033|DMD MSMS AL20221201_MKP_PDAC_01 4 395.5044250488281 3 395.503748 1183.48942 NaN NaN NaN NaN NaN NaN NaN 36.478 1 32.285 31.785 32.785 -4.1928 0 0 0 0.76439 1 21305 21305 4.5289 0 1 + 18757 24105 12922 13152 22143 22143 -0.09499001815174779 HEQVSFGEPF 10 Unmodified _HEQVSFGEPF_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7700805664062 2 588.769645 1175.52474 0.016803 9.8933E-06 -0.41145 -0.00024225 -0.39464 -0.00023235 588.7697243437956 31.554 0.15624 31.554 31.463 31.619 0 15 7 3 0 0 0 0.44373 1 16448 16448 19.257 2.3147 1 1689300 18758 16354 12923 13153 22144 22144 -0.056003392873890334 HEQVSFGEPF 10 Unmodified _HEQVSFGEPF_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8489990234375 3 392.848856 1175.52474 -0.22629 -8.8897E-05 1.1639 0.00045724 0.93762 0.00036834 392.84916971361986 32.852 0.19154 32.693 32.596 32.787 -0.15918 15 7 3 0 0 0 0.6606 1 17122 17122 3.8763 0.88109 1 2098600 18759 16354 12923 13153 22145 22145 -0.056003392873890334 HESETMRISS 10 Unmodified _HESETMRISS_ 0 0 0 ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8497619628906 3 392.848638 1175.52409 -0.45342 -0.00017812 -0.092302 -3.6261E-05 -0.54572 -0.00021439 392.84860909228445 29.073 0.46791 29.073 28.943 29.411 0 58 22 5 0 0 0 0.52888 1 15014 15014 8.9762 0.53194 1 35100000 18760 13009 12924 13154 22146 22146 -0.05665501998714717 HESETMRISS 10 Unmodified _HESETMRISS_ 0 0 0 ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.848876953125 3 392.848638 1175.52409 -0.054419 -2.1378E-05 0.81694 0.00032094 0.76253 0.00029956 392.84889948999995 31.554 0.42235 31.554 31.398 31.82 0 56 20 4 0 0 0 0.42068 1 16407 16407 12.873 3.3286 1 20094000 18761 13009 12924 13154 22147 22147 -0.05665501998714717 HESETMRISS 10 Unmodified _HESETMRISS_ 0 0 0 ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8483276367188 3 392.848638 1175.52409 -1.3272 -0.0005214 0.34452 0.00013534 -0.98271 -0.00038606 392.84885512628244 32.513 0.24422 32.513 32.374 32.618 0 39 15 3 0 0 0 0.42068 1 16954 16954 12.873 3.8964 1 24608000 18762 13009 12924 13154 22148 22148 -0.05665501998714717 HESETMRISS 10 Unmodified _HESETMRISS_ 0 0 0 ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF ENST00000414287.5_1_22:49808751-49808829:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.848638 1175.52409 -0.18923 -7.434E-05 0.17304 6.7977E-05 -0.016199 -6.3636E-06 392.84886783955847 32.575 0.13745 32.446 32.392 32.53 -0.12915 -0.03338 -0.00018372 NaN 12.873 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1610700 18763 13009 12924 13154 -0.05665501998714717 HESIVYVTL 9 Unmodified _HESIVYVTL_ 0 0 0 REV__nc|ENSG00000087111|Q96S52-2|PIGS REV__nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7867431640625 2 530.787307 1059.56006 1.0628 0.00056412 -0.2433 -0.00012914 0.81949 0.00043497 530.7869883145821 50.52 0.4382 44.981 44.725 45.163 -5.5391 58 27 3 0 0 0 0.025842 1 31605 31605 64.236 15.89 1 62308000 + 18764 17777 12925 13155 22149 22149 0.03266323240427482 HESSKRQKFL 10 Unmodified _HESSKRQKFL_ 0 0 0 REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.568359375 3 420.566683 1258.67822 -0.14223 -5.9815E-05 4.1981 0.0017656 4.0559 0.0017058 420.90254513126854 44.867 0.13706 44.845 44.758 44.895 -0.022064 9 6 2 0 0 0 0.43662 1 24080 24080 19.626 2.5774 1 8504600 + 18765 28783 12926 13156 22150 22150 0.05922695548952106 HETCYCESLL 10 Unmodified _HETCYCESLL_ 0 0 0 ENST00000402364.1_1_13:23912216-23912294:-|nuORF ENST00000402364.1_1_13:23912216-23912294:-|nuORF ENST00000402364.1_1_13:23912216-23912294:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.83544921875 3 399.835341 1196.4842 -0.082366 -3.2933E-05 0.21586 8.631E-05 0.1335 5.3377E-05 399.8354566599713 35.771 0.2043 35.771 35.674 35.878 0 21 9 3 0 0 0 0.6606 1 18936 18936 3.8763 0 1 2576000 18766 12890 12927 13157 22151 22151 -0.10618764993682817 HETPAQES 8 Unmodified _HETPAQES_ 0 0 0 ENST00000290573.6_1_2:75061256-75061319:+|nuORF ENST00000290573.6_1_2:75061256-75061319:+|nuORF ENST00000290573.6_1_2:75061256-75061319:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.69873046875 2 449.698689 897.382825 NaN NaN NaN NaN NaN NaN NaN 15.749 1 15.755 15.255 16.255 0.0057774 0 0 0 0.97444 1 7864 7864 5.2307 0.47466 1 18767 11465 12928 13158 22152 22152 -0.06997132309709286 HEVADVEPVL 10 Unmodified _HEVADVEPVL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;nc|ENSG00000141556|Q9BTW9-5|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7672119140625 2 554.287671 1106.56079 0.75799 0.00042015 1.0789 0.000598 1.8369 0.0010181 554.2876503603887 38.454 0.2675 38.454 38.414 38.682 0 17 13 2 0 0 0 0.22149 1 20584 20584 14.838 0 1 1625900 18768 5350;30184 12929 13159 22153 22153 0.011771178894605328 HEVFDAGEVF 10 Unmodified _HEVFDAGEVF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2626953125 2 575.264196 1148.51384 1.2953 0.00074516 -1.7375 -0.00099954 -0.4422 -0.00025438 575.2644315289103 54.014 0.37308 48.149 47.929 48.302 -5.8653 54 21 3 0 0 0 0.60623 1 34267 34267 10.824 0 1 45877000 18769 1790 12930 13160 22154 22154 -0.0544774166166917 HEVPSSDPLIQ 11 Unmodified _HEVPSSDPLIQ_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MSMS AL20221201_MKP_PDAC_01 4 611.3090209960938 2 611.309135 1220.60372 NaN NaN NaN NaN NaN NaN NaN 98.089 1 91.913 91.413 92.413 -6.1757 0 0 0 0.71476 1 65025 65025 16.149 0.30192 1 + 18770 24566 12931 13161 22155 22155 0.002238879469132371 HEVQEQFSQG 10 Unmodified _HEVQEQFSQG_ 0 0 0 REV__nc|ENSG00000163714|O15042-2|U2SURP REV__nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.76806640625 2 594.767634 1187.52072 0.64554 0.00038395 1.8302 0.0010885 2.4757 0.0014725 595.2702318235193 52.332 0.17562 51.898 51.809 51.985 -0.43367 14 8 2 0 0 0 0.40136 1 28270 28270 21.537 4.9711 1 2673900 + 18771 29744 12932 13162 22156 22156 -0.06554428781100796 HEVRRKSLV 9 Unmodified _HEVRRKSLV_ 0 0 0 ENSG00000122728|ENST00000242310|TAF1L ENSG00000122728|ENST00000242310|TAF1L ENSG00000122728|ENST00000242310|TAF1L MSMS AL20221201_MKP_PDAC_01 4 375.2298889160156 3 375.228001 1122.66217 NaN NaN NaN NaN NaN NaN NaN 105.11 1 98.937 98.437 99.437 -6.1757 0 0 0 0.84564 1 70400 70400 1.0715 0.10919 1 18772 3657 12933 13163 22157 22157 0.10575034102703285 HEWSNFVHL 9 Unmodified _HEWSNFVHL_ 0 0 0 REV__ENST00000526451.5_1_11:65765641-65765800:-|nuORF REV__ENST00000526451.5_1_11:65765641-65765800:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5250854492188 3 390.189324 1167.54614 1.0082 0.00039338 -0.59289 -0.00023134 0.41528 0.00016204 390.189149884856 29.077 0.34344 25.776 25.626 25.969 -3.3016 54 21 3 0 0 0 0.19361 1 16193 16193 23.79 2.1996 1 384660000 + 18773 28370 12934 13164 22158 22158 -0.03092909468000471 HEWSNFVHL 9 Unmodified _HEWSNFVHL_ 0 0 0 REV__ENST00000526451.5_1_11:65765641-65765800:-|nuORF REV__ENST00000526451.5_1_11:65765641-65765800:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 390.189324 1167.54614 0.35162 0.0001372 -0.033379 -1.3024E-05 0.31824 0.00012417 390.18923061173035 26.173 0.21257 26.141 26.012 26.224 -0.031708 0.14892 0.00032805 NaN 23.79 39 13 4 NaN NaN NaN NaN 0 NaN NaN 0 64848000 + 18774 28370 12934 13164 -0.03092909468000471 HEWWRWWGWMS 11 Unmodified _HEWWRWWGWMS_ 0 0 0 REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF REV__ENST00000564785.5_1_15:75650962-75651301:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.8577880859375 2 823.859138 1645.70372 NaN NaN NaN NaN NaN NaN NaN 102.1 1 102.05 101.55 102.55 -0.045853 0 0 0 0.9435 1 56713 56713 0 0 1 + 18775 28874 12935 13165 22159 22159 -0.09330153200312452 HEYLSFRDK 9 Unmodified _HEYLSFRDK_ 0 0 0 nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000498611.5_1_22:50657979-50682900:-|nuORF nc|ENSG00000128159|Q96RT7-2|TUBGCP6 nc|ENSG00000128159|Q96RT7-2|TUBGCP6 MSMS AL20221201_MKP_PDAC_01 4 398.8687744140625 3 398.86825 1193.58292 NaN NaN NaN NaN NaN NaN NaN 16.774 1 14.217 13.717 14.717 -2.557 0 0 0 0.81961 1 8715 8715 3.3196 0 1 18776 4048 12936 13166 22160 22160 -0.006126576421138452 HFAKWHHV 8 Unmodified _HFAKWHHV_ 0 0 0 ENST00000491506.2_1_3:52227563-52228160:+|nuORF ENST00000491506.2_1_3:52227563-52228160:+|nuORF ENST00000491506.2_1_3:52227563-52228160:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2750244140625 2 531.275035 1060.53552 NaN NaN NaN NaN NaN NaN NaN 17.349 1 17.354 16.854 17.854 0.0050564 0 0 0 0.97444 1 8748 8748 0 0 1 18777 14282 12937 13167 22161 22161 0.00767152668208837 HFDAFTIKGK 10 Unmodified _HFDAFTIKGK_ 0 0 0 REV__ENSG00000153395|ENST00000283415|LPCAT1 REV__ENSG00000153395|ENST00000283415|LPCAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3132934570312 2 582.314023 1162.61349 NaN NaN NaN NaN NaN NaN NaN 84.525 1 84.026 83.526 84.526 -0.49961 0 0 0 0.97044 1 46254 46254 7.2892 4.294 1 + 18778 21170 12938 13168 22162 22162 0.03869120742933774 HFDDTVVCL 9 Carbamidomethyl (C) _HFDDTVVC(Carbamidomethyl (C))L_ HFDDTVVC(1)L HFDDTVVC(100)L 0 1 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.252685546875 2 553.252774 1104.491 0.050024 2.7676E-05 -0.0076436 -4.2288E-06 0.04238 2.3447E-05 553.2529665609059 55.219 0.50482 55.219 55.005 55.509 0 69 21 5 0 0 0 0.0086629 2 30600 30600;30705 101.72 61.765 1 60556000 18779 6245 12939 13169 22163;22164 22163 621 -0.05707084050800404 HFDDTVVCL 9 Carbamidomethyl (C) _HFDDTVVC(Carbamidomethyl (C))L_ HFDDTVVC(1)L HFDDTVVC(82)L 0 1 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.25341796875 2 553.252774 1104.491 1.4468 0.00080046 -0.72068 -0.00039872 0.72615 0.00040175 553.2525179120581 62.431 0.96554 56.256 55.984 56.949 -6.1757 123 50 4 0 0 0 0.0094915 3 40297 40171;40297;40424 81.864 60.117 1 403860000 18780 6245 12939 13169 22165;22166;22167 22166 621 -0.05707084050800404 HFDDTVVCL 9 Carbamidomethyl (C) _HFDDTVVC(Carbamidomethyl (C))L_ HFDDTVVC(1)L HFDDTVVC(130)L 0 1 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20221201_MKP_PDAC_01 4 1105.50537109375 1 1105.49827 1104.491 1.287 0.0014228 0.64271 0.00071051 1.9297 0.0021333 1105.4991999729937 62.432 0.31777 56.256 56.104 56.422 -6.1757 19 16 2 0 0 0 0.0021514 1 40329 40329 131.3 69.94 1 18424000 18781 6245 12939 13169 22168 22168 621 -0.05707084050800404 HFDDTVVCL 9 Unmodified _HFDDTVVCL_ 0 0 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000476241.2_2_1:245025757-245027609:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.7769775390625 2 524.742042 1047.46953 0.52813 0.00027713 0.44924 0.00023574 0.97737 0.00051287 524.7422777996208 66.649 0.48436 60.474 60.245 60.73 -6.1757 47 27 3 0 0 0 0.1474 1 43321 43321 28.487 20.577 1 24824000 18782 6245 12939 13170 22169 22169 -0.052304690795153874 HFDFQGCNF 9 Carbamidomethyl (C) _HFDFQGC(Carbamidomethyl (C))NF_ HFDFQGC(1)NF HFDFQGC(120)NF 0 1 0 nc|ENSG00000084693|Q8NDL9-3|AGBL5;nc|ENSG00000084693|Q8NDL9-2|AGBL5;ENSG00000084693|ENST00000360131|AGBL5;ENST00000477136.5_1_2:27278334-27279673:+|nuORF nc|ENSG00000084693|Q8NDL9-3|AGBL5 nc|ENSG00000084693|Q8NDL9-3|AGBL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2343139648438 2 586.234916 1170.45528 1.0771 0.00063143 -0.62148 -0.00036433 0.4556 0.00026709 586.2346118662855 59.287 0.43837 53.213 52.92 53.358 -6.0745 40 24 2 0 0 0 0.0055767 2 37949 37949;38087 115.69 79.648 1 34701000 18783 1394 12940 13171 22170;22171 22170 131 -0.12313121507804681 HFDGFVVEV 9 Unmodified _HFDGFVVEV_ 0 0 0 ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;nc|ENSG00000177830|Q9BWS9-3|CHID1;ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF ENSG00000177830|ENST00000323578|CHID1 ENSG00000177830|ENST00000323578|CHID1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7589111328125 2 524.758549 1047.50255 NaN NaN NaN NaN NaN NaN NaN 68.314 1 67.834 67.334 68.334 -0.48071 0 0 0 0.36554 1 37336 37336 21.747 11.673 1 18784 8709 12941 13172 22172 22172 -0.019305189651504406 HFDGLIFV 8 Unmodified _HFDGLIFV_ 0 0 0 nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2533569335938 2 474.252903 946.491253 0.97592 0.00046283 0.09796 4.6458E-05 1.0739 0.00050929 474.25277519329546 80.687 0.30338 80.195 80.031 80.334 -0.49247 27 12 3 0 0 0 0.50586 1 44149 44149 34.187 19.606 1 1044400 18785 5014 12942 13173 22173 22173 0.015867037313796573 HFDGLIFV 8 Unmodified _HFDGLIFV_ 0 0 0 nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.6763305664062 2 474.252903 946.491253 0.44461 0.00021086 0.077183 3.6604E-05 0.52179 0.00024746 474.2529265975157 98.694 0.085312 92.518 92.465 92.551 -6.1757 9 5 2 0 0 0 0.28922 2 65489 65489;65518 56.541 28.368 1 16674000 18786 5014 12942 13173 22174;22175 22174 0.015867037313796573 HFDIVIRNL 9 Unmodified _HFDIVIRNL_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L;nc|ENSG00000129317|Q9H0K6-2|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8223876953125 2 563.822015 1125.62948 0.67479 0.00038046 -0.49859 -0.00028112 0.1762 9.9346E-05 563.821580235319 59.972 0.3018 59.918 59.734 60.036 -0.053062 30 14 3 0 0 0 0.12357 1 32730 32730 39.95 13.682 1 7738800 18787 4130 12943 13174 22176 22176 0.0716882697984147 HFDIVIRNL 9 Unmodified _HFDIVIRNL_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L;nc|ENSG00000129317|Q9H0K6-2|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.7587280273438 2 563.822015 1125.62948 1.3109 0.00073913 0.97547 0.00054999 2.2864 0.0012891 563.8223702642863 89.693 0.39433 83.517 83.362 83.756 -6.1757 28 21 2 0 0 0 0.19205 1 59171 59171 10.074 2.1638 1 12222000 18788 4130 12943 13174 22177 22177 0.0716882697984147 HFDLADRMF 9 Oxidation (M) _HFDLADRM(Oxidation (M))F_ HFDLADRM(1)F HFDLADRM(44)F 0 0 1 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2666015625 2 584.266216 1166.51788 0.5304 0.00030989 0.0044625 2.6073E-06 0.53486 0.0003125 584.2668386607592 46.832 0.25701 46.495 46.367 46.624 -0.33664 24 12 3 0 0 0 0.05483 1 25081 25081 43.772 25.626 1 3139200 18789 7032 12944 13175 22178 22178 1206 -0.058719754395951895 HFDLASTTI 9 Unmodified _HFDLASTTI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7559204101562 2 502.756007 1003.49746 0.71383 0.00035888 -0.53362 -0.00026828 0.18021 9.0604E-05 502.75594672717517 53.402 0.21769 53.402 53.244 53.462 0 15 9 2 0 0 0 0.038285 1 29626 29626 50.855 31.416 1 2292800 18790 868 12945 13176 22179 22179 -0.004148228277585986 HFDLASTTI 9 Unmodified _HFDLASTTI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2238464355469 2 502.756007 1003.49746 0.0036659 1.8431E-06 0.37404 0.00018805 0.37771 0.0001899 502.75622595313575 53.899 0.25864 53.433 53.327 53.586 -0.46664 19 12 2 0 0 0 0.18882 1 29228 29228 15.847 15.847 1 2591800 18791 868 12945 13176 22180 22180 -0.004148228277585986 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2078857421875 3 397.208607 1188.60399 0.051583 2.0489E-05 -1.0938 -0.00043449 -1.0423 -0.000414 397.20809268652215 60.355 0.18092 59.864 59.746 59.927 -0.49079 10 8 2 0 0 0 0.042911 1 32878 32878 43.772 33.622 1 3112100 18792 10595 12946 13177 22181 22181 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.78955078125 2 595.309272 1188.60399 0.10413 6.1992E-05 0.88754 0.00052836 0.99167 0.00059035 595.3102639830007 60.352 0.16194 59.861 59.786 59.948 -0.49079 17 7 3 0 0 0 0.18054 1 32876 32876 29.082 13.234 1 4728300 18793 10595 12946 13177 22182 22182 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3124389648438 2 595.309272 1188.60399 0.15445 9.1945E-05 0.39452 0.00023486 0.54897 0.00032681 595.3094088812912 59.946 0.33826 59.893 59.714 60.052 -0.053062 51 16 5 0 0 0 0.0038489 2 32631 32631;32729 122.18 96.78 1 46446000 18794 10595 12946 13177 22183;22184 22183 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2085571289062 3 397.208607 1188.60399 0.14433 5.7331E-05 -0.021493 -8.5372E-06 0.12284 4.8793E-05 397.2085662313935 59.925 0.3218 59.872 59.714 60.036 -0.053062 43 15 4 0 0 0 0.008678 2 32641 32641;32740 79.596 55.807 1 20131000 18795 10595 12946 13177 22185;22186 22185 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2090759277344 3 397.208607 1188.60399 1.1907 0.00047295 -0.079038 -3.1395E-05 1.1117 0.00044156 397.20855121484976 87.1 0.64914 80.924 80.715 81.364 -6.1757 95 35 3 0 0 0 0.008678 4 57434 57320;57434;57566;57708 70.332 51.959 1 50704000 18796 10595 12946 13177 22187;22188;22189;22190 22188 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.310302734375 2 595.309272 1188.60399 0.67288 0.00040057 -0.15094 -8.9855E-05 0.52194 0.00031071 595.3091168714878 87.186 0.66341 81.011 80.681 81.344 -6.1757 94 36 3 0 0 0 3.2945E-16 3 57587 57329;57460;57587 191.38 145.36 1 49949000 18797 10595 12946 13177 22191;22192;22193 22193 0.017233524574066905 HFDLNLRQF 9 Unmodified _HFDLNLRQF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MSMS AL20221201_MKP_PDAC_01 4 595.31103515625 2 595.309272 1188.60399 NaN NaN NaN NaN NaN NaN NaN 87.526 1 81.35 80.85 81.85 -6.1757 0 0 0 0.024473 1 57723 57723 72.968 48.947 1 18798 10595 12946 13177 22194 22194 0.017233524574066905 HFDLSVIEL 9 Unmodified _HFDLSVIEL_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7880249023438 2 536.787307 1071.56006 0.26671 0.00014317 0.026677 1.432E-05 0.29339 0.00015749 536.7872712908245 84.113 0.34933 84.113 83.97 84.319 0 53 17 4 0 0 0 0.016184 2 46597 46597;46693 67.344 40.46 1 4009000 18799 1628 12947 13178 22195;22196 22195 0.027143232404114315 HFDLSVIEL 9 Unmodified _HFDLSVIEL_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7875366210938 2 536.787307 1071.56006 0.41481 0.00022266 -0.020469 -1.0988E-05 0.39434 0.00021168 536.7872273759082 84.599 0.6674 84.099 83.864 84.531 -0.49961 102 29 5 0 0 0 0.0090851 3 46321 46224;46321;46424 85.357 40.95 1 38783000 18800 1628 12947 13178 22197;22198;22199 22198 0.027143232404114315 HFDLSVIEL 9 Unmodified _HFDLSVIEL_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7882080078125 2 536.787307 1071.56006 0.00067869 3.6431E-07 0.65913 0.00035381 0.65981 0.00035418 536.7875776914136 98.989 0.23431 92.813 92.689 92.923 -6.1757 35 15 3 0 0 0 0.0090851 1 65744 65744 85.357 40.95 1 383280000 18801 1628 12947 13178 22200 22200 0.027143232404114315 HFDLSVIEL 9 Unmodified _HFDLSVIEL_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.787307 1071.56006 -0.13017 -6.9873E-05 1.6712 0.00089708 1.541 0.00082721 536.7886931491917 84.031 0.070862 84.094 84.047 84.118 0.063171 -0.0077837 0.0017913 NaN 85.357 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 7139500 18802 1628 12947 13178 0.027143232404114315 HFDMAVYL 8 Oxidation (M) _HFDM(Oxidation (M))AVYL_ HFDM(1)AVYL HFDM(57)AVYL 0 0 1 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2341613769531 2 506.233853 1010.45315 0.51257 0.00025948 -0.32243 -0.00016323 0.19014 9.6253E-05 506.2339208122175 50.544 0.35391 50.544 50.35 50.704 0 42 16 3 0 0 0 0.28922 1 27837 27837 56.541 40.773 1 19630000 18803 1582;8175 12948 13179 22201 22201 268 -0.051655502455901114 HFDMAVYL 8 Oxidation (M) _HFDM(Oxidation (M))AVYL_ HFDM(1)AVYL HFDM(57)AVYL 0 0 1 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2337036132812 2 506.233853 1010.45315 0.73328 0.00037121 -1.4086 -0.00071308 -0.67532 -0.00034187 506.23311760205456 50.809 0.31103 50.809 50.685 50.996 0 45 18 3 0 0 0 0.28922 1 28063 28063 56.541 43.033 1 19465000 18804 1582;8175 12948 13179 22202 22202 268 -0.051655502455901114 HFDMAVYL 8 Oxidation (M) _HFDM(Oxidation (M))AVYL_ HFDM(1)AVYL HFDM(47)AVYL 0 0 1 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.23486328125 2 506.233853 1010.45315 -0.063253 -3.2021E-05 0.93147 0.00047154 0.86821 0.00043952 506.2343679604112 51.017 0.34325 50.604 50.415 50.758 -0.41351 40 16 3 0 0 0 0.37649 1 27462 27462 46.921 31.153 1 9780200 18805 1582;8175 12948 13179 22203 22203 268 -0.051655502455901114 HFDMAVYL 8 Oxidation (M) _HFDM(Oxidation (M))AVYL_ HFDM(1)AVYL HFDM(67)AVYL 0 0 1 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2334594726562 2 506.233853 1010.45315 -0.47408 -0.00023999 -0.28488 -0.00014421 -0.75895 -0.00038421 506.23361826085903 51.32 0.2894 50.906 50.738 51.028 -0.41351 32 14 3 0 0 0 0.21786 1 27673 27673 67.035 47.596 1 10222000 18806 1582;8175 12948 13179 22204 22204 268 -0.051655502455901114 HFDMAVYL 8 Oxidation (M) _HFDM(Oxidation (M))AVYL_ HFDM(1)AVYL HFDM(47)AVYL 0 0 1 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2332763671875 2 506.233853 1010.45315 0.59794 0.0003027 0.090104 4.5614E-05 0.68805 0.00034831 506.23385599439365 56.947 0.39438 50.97 50.736 51.13 -5.9769 38 23 2 0 0 0 0.37649 1 36342 36342 46.921 31.153 1 23679000 18807 1582;8175 12948 13179 22205 22205 268 -0.051655502455901114 HFDMAVYL 8 Unmodified _HFDMAVYL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2368774414062 2 498.236396 994.458238 0.33434 0.00016658 1.0228 0.00050961 1.3572 0.00067619 498.2369105730262 70.902 0.43362 70.424 70.202 70.636 -0.47735 33 19 2 0 0 0 0.35156 2 38871 38766;38871 49.669 38.554 1 2828000 18808 1582;8175 12948 13180 22206;22207 22207 -0.039212463829812805 HFDMAVYL 8 Unmodified _HFDMAVYL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2351989746094 2 498.236396 994.458238 0.37411 0.00018639 -0.18799 -9.3665E-05 0.18611 9.2728E-05 498.2364780687826 93.077 0.73227 86.901 86.382 87.114 -6.1757 101 48 3 0 0 0 0.21786 4 61230 61230;61356;61487;61618 67.035 46.164 1 37975000 18809 1582;8175 12948 13180 22208;22209;22210;22211 22208 -0.039212463829812805 HFDMAVYL 8 Unmodified _HFDMAVYL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1;ENSG00000172037|ENST00000305544|LAMB2 ENSG00000091136|ENST00000222399|LAMB1 MSMS AL20221201_MKP_PDAC_01 4 498.2367553710938 2 498.236396 994.458238 NaN NaN NaN NaN NaN NaN NaN 93.301 1 87.126 86.626 87.626 -6.1757 0 0 0 0.34053 1 61747 61747 59.795 38.924 1 18810 1582;8175 12948 13180 22212 22212 -0.039212463829812805 HFDMNIISM 9 2 Oxidation (M) _HFDM(Oxidation (M))NIISM(Oxidation (M))_ HFDM(1)NIISM(1) HFDM(48)NIISM(48) 0 0 2 ENSG00000170949|ENST00000683776|ZNF160;nc|ENSG00000170949|Q9HCG1-2|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2467041015625 2 570.246634 1138.47872 0.36465 0.00020794 -0.03511 -2.0021E-05 0.32954 0.00018792 570.2467512386731 38.032 0.48135 38.032 37.702 38.184 0 32 23 2 0 0 0 0.044011 1 20267 20267 47.749 32.5 1 3009100 18811 8048 12949 13181 22213 22213 1370;1371 -0.08498443785470045 HFDMNIISM 9 2 Oxidation (M) _HFDM(Oxidation (M))NIISM(Oxidation (M))_ HFDM(1)NIISM(1) HFDM(65)NIISM(65) 0 0 2 ENSG00000170949|ENST00000683776|ZNF160;nc|ENSG00000170949|Q9HCG1-2|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2476196289062 2 570.246634 1138.47872 0.17986 0.00010256 0.77823 0.00044378 0.95809 0.00054635 570.2474308533857 38.353 0.53837 38.066 37.724 38.262 -0.28687 54 24 3 0 0 0 0.018301 2 20197 20100;20197 65.235 39.836 1 3748100 18812 8048 12949 13181 22214;22215 22215 1370;1371 -0.08498443785470045 HFDPEVVQI 9 Unmodified _HFDPEVVQI_ 0 0 0 MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2769775390625 2 542.277106 1082.53966 0.26653 0.00014453 -0.69043 -0.00037441 -0.4239 -0.00022987 542.2770869510139 56.79 0.63748 56.79 56.45 57.087 0 91 27 5 0 0 0 0.013323 2 31572 31572;31680 71.134 35.089 1 45025000 18813 6105 12950 13182 22216;22217 22216 0.0016915258061089844 HFDPEVVQI 9 Unmodified _HFDPEVVQI_ 0 0 0 MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2779541015625 2 542.277106 1082.53966 0.29928 0.00016229 -0.032364 -1.755E-05 0.26691 0.00014474 542.2775793456294 57.312 0.33916 56.823 56.645 56.984 -0.48974 48 15 4 0 0 0 0.013323 2 31128 31128;31234 71.134 29.039 1 7796600 18814 6105 12950 13182 22218;22219 22218 0.0016915258061089844 HFDPEVVQI 9 Unmodified _HFDPEVVQI_ 0 0 0 MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2774658203125 2 542.277106 1082.53966 1.0351 0.00056132 0.38783 0.00021031 1.4229 0.00077163 542.2777069279751 63.677 1.4321 57.501 56.964 58.396 -6.1757 222 79 6 0 0 0 0.013323 5 41235 41090;41098;41235;41380;41774 71.134 35.089 1 87514000 18815 6105 12950 13182 22220;22221;22222;22223;22224 22222 0.0016915258061089844 HFDTIFEVF 9 Unmodified _HFDTIFEVF_ 0 0 0 nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7813110351562 2 577.779482 1153.54441 0.99261 0.00057351 0.92557 0.00053477 1.9182 0.0011083 577.7798740908518 80.264 0.45129 79.774 79.533 79.984 -0.48932 65 17 5 0 0 0 0.052168 1 44027 44027 44.407 0 1 18672000 18816 5241 12951 13183 22225 22225 -0.026219632766242285 HFDTIFEVF 9 Unmodified _HFDTIFEVF_ 0 0 0 nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7804565429688 2 577.779482 1153.54441 0.48862 0.00028231 -0.60039 -0.00034689 -0.11177 -6.4579E-05 577.7794687736332 92.888 0.21744 92.431 92.284 92.501 -0.4574 15 11 2 0 0 0 0.43463 1 50771 50771 10.824 0 1 609080 18817 5241 12951 13183 22226 22226 -0.026219632766242285 HFDTPVQF 8 Unmodified _HFDTPVQF_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7673034667969 2 495.737617 989.460681 0.29558 0.00014653 -0.35304 -0.00017501 -0.057454 -2.8482E-05 495.737456440975 55.038 0.24171 54.56 54.409 54.65 -0.47798 29 11 3 0 0 0 8.7369 1 29851 29851 40.449 30.265 1 1382600 18818 2892 12952 13184 22227 22227 -0.03447074653672644 HFDVDGCYDL 10 Unmodified _HFDVDGCYDL_ 0 0 0 ENST00000423038.1_1_X:47132767-47133175:-|nuORF ENST00000423038.1_1_X:47132767-47133175:-|nuORF ENST00000423038.1_1_X:47132767-47133175:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2401733398438 2 592.239864 1182.46517 -0.08796 -5.2094E-05 2.8341 0.0016785 2.7461 0.0016264 592.2408870646336 52.343 0.22398 52.343 52.243 52.467 0 17 9 2 0 0 0 0.5905 1 28985 28985 11.64 0.81637 1 1528800 18819 13125 12953 13185 22228 22228 -0.11875978293073786 HFDVLFAEF 9 Unmodified _HFDVLFAEF_ 0 0 0 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28;nc|ENSG00000159733|Q9HCC9-7|ZFYVE28;nc|ENSG00000159733|Q9HCC9-6|ZFYVE28;nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.775390625 2 562.7742 1123.53385 0.60633 0.00034123 0.6548 0.00036851 1.2611 0.00070973 562.7744118220293 91.409 0.22772 90.914 90.803 91.031 -0.49457 18 10 2 0 0 0 0.32871 1 49956 49956 15.847 10.617 1 856470 18820 6671 12954 13186 22229 22229 -0.022979459310590755 HFDVTVKM 8 Oxidation (M) _HFDVTVKM(Oxidation (M))_ HFDVTVKM(1) HFDVTVKM(82) 0 0 1 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7474975585938 2 496.747127 991.479702 -0.45744 -0.00022723 -0.029182 -1.4496E-05 -0.48662 -0.00024173 496.74711863350166 27.107 0.26019 27.107 26.992 27.253 0 22 12 2 0 0 0 0.17097 1 13942 13942 81.613 51.388 1 2141100 18821 7176 12955 13187 22230 22230 1243 -0.016378613542542553 HFDVTVKM 8 Unmodified _HFDVTVKM_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MSMS AL20221201_MKP_PDAC_01 4 488.7494812011719 2 488.74967 975.484787 NaN NaN NaN NaN NaN NaN NaN 46.585 1 41.504 41.004 42.004 -5.0805 0 0 0 0.2509 1 28814 28814 77.984 45.867 1 18822 7176 12955 13188 22231 22231 -0.003935574916340556 HFDVTVKM 8 Unmodified _HFDVTVKM_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MSMS AL20221201_MKP_PDAC_01 4 488.2846069335938 2 488.74967 975.484787 NaN NaN NaN NaN NaN NaN NaN 46.615 1 41.534 41.034 42.034 -5.0805 0 0 0 0.57076 1 28836 28836 36.044 10.645 1 18823 7176 12955 13188 22232 22232 -0.003935574916340556 HFDVVKCIL 9 Carbamidomethyl (C) _HFDVVKC(Carbamidomethyl (C))IL_ HFDVVKC(1)IL HFDVVKC(73)IL 0 1 0 ENSG00000152684|ENST00000274311|PELO ENSG00000152684|ENST00000274311|PELO ENSG00000152684|ENST00000274311|PELO MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8056030273438 2 565.804977 1129.5954 1.1671 0.00066038 -0.46899 -0.00026536 0.69816 0.00039502 565.8042929477656 89.971 0.38982 83.796 83.598 83.988 -6.1757 29 21 2 0 0 0 0.012668 1 59422 59422 72.968 36.502 1 14161000 18824 6206 12956 13189 22233 22233 617 0.035786624965794545 HFDYQSLLM 9 Oxidation (M) _HFDYQSLLM(Oxidation (M))_ HFDYQSLLM(1) HFDYQSLLM(52) 0 0 1 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.267578125 2 585.268424 1168.5223 -0.00031155 -1.8234E-07 0.029979 1.7546E-05 0.029667 1.7363E-05 585.2683975152773 61.683 0.46307 61.195 60.903 61.366 -0.48764 55 21 3 0 0 0 0.03568 2 33506 33506;33609 52.268 37.43 1 7244400 18825 6634 12957 13190 22234;22235 22234 1163 -0.055225110167157254 HFDYQSLLM 9 Oxidation (M) _HFDYQSLLM(Oxidation (M))_ HFDYQSLLM(1) HFDYQSLLM(56) 0 0 1 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MSMS AL20221201_MKP_PDAC_01 4 585.2684936523438 2 585.268424 1168.5223 NaN NaN NaN NaN NaN NaN NaN 73.243 1 67.067 66.567 67.567 -6.1757 0 0 0 0.053277 1 47903 47903 56.177 33.441 1 18826 6634 12957 13190 22236 22236 1163 -0.055225110167157254 HFDYQSLLM 9 Oxidation (M) _HFDYQSLLM(Oxidation (M))_ 0 0 1 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 585.268424 1168.5223 0.60944 0.00035669 -0.52145 -0.00030519 0.087998 5.1503E-05 585.2683084181198 61.222 0.29985 61.178 61.044 61.344 -0.04351 -0.0082641 -0.00053015 NaN 52.268 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4279400 18827 6634 12957 13190 1163 -0.055225110167157254 HFDYQSLLM 9 Unmodified _HFDYQSLLM_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2691040039062 2 577.270967 1152.52738 0.63941 0.00036911 -2.5432 -0.0014681 -1.9038 -0.001099 577.2693678396793 71.851 0.30702 71.375 71.242 71.549 -0.4761 17 11 2 0 0 0 0.2143 1 39331 39331 21.747 14.457 1 534230 18828 6634 12957 13191 22237 22237 -0.04278207154084157 HFDYQSLLM 9 Unmodified _HFDYQSLLM_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2706298828125 2 577.270967 1152.52738 0.0841 4.8548E-05 0.25373 0.00014647 0.33783 0.00019502 577.2713349361374 93.317 0.34351 87.141 86.916 87.26 -6.1757 55 26 3 0 0 0 0.011968 3 61794 61657;61741;61794 74.929 48.045 1 25012000 18829 6634 12957 13191 22238;22239;22240 22240 -0.04278207154084157 HFEHLMVAL 9 Unmodified _HFEHLMVAL_ 0 0 0 ENSG00000138772|ENST00000264908|ANXA3;ENST00000510502.1_1_4:79475627-79503447:+|nuORF ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7828369140625 2 548.784044 1095.55354 NaN NaN NaN NaN NaN NaN NaN 48.21 1 47.857 47.357 48.357 -0.3526 0 0 0 0.26667 1 25866 25866 26.884 2.2098 1 18830 5104 12958 13192 22241 22241 0.009581068080478872 HFELGGDK 8 Unmodified _HFELGGDK_ 0 0 0 ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A;ENST00000399253.3_1_X:140233088-140233355:+|nuORF ENSG00000165502|ENST00000298289|RPL36AL ENSG00000165502|ENST00000298289|RPL36AL MSMS AL20221201_MKP_PDAC_01 4 451.721923828125 2 451.721967 901.429381 NaN NaN NaN NaN NaN NaN NaN 24.761 1 21.878 21.378 22.378 -2.8831 0 0 0 0.56375 1 13501 13501 36.506 11.832 1 18831 7349 12959 13193 22242 22242 -0.025276476877593268 HFELGGDKKR 10 Unmodified _HFELGGDKKR_ 0 0 0 ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A;ENST00000399253.3_1_X:140233088-140233355:+|nuORF ENSG00000165502|ENST00000298289|RPL36AL ENSG00000165502|ENST00000298289|RPL36AL MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5488891601562 3 396.215761 1185.62546 0.3326 0.00013178 0.70098 0.00027774 1.0336 0.00040952 396.2161338571414 15.521 0.21391 12.994 12.893 13.107 -2.5273 112 51 3 0 0 0 0.11654 1 7929 7929 44.945 30.539 1 4616200 18832 7349 12960 13194 22243 22243 0.04006737486133716 HFFCPSRFVVF 11 Unmodified _HFFCPSRFVVF_ 0 0 0 ENST00000303391.10_2_X:153289994-153290270:-|nuORF ENST00000303391.10_2_X:153289994-153290270:-|nuORF ENST00000303391.10_2_X:153289994-153290270:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3421630859375 2 693.3448 1384.67505 NaN NaN NaN NaN NaN NaN NaN 72.591 1 72.591 72.091 73.091 0 0 0 0 0.94144 1 40417 40417 1.4819 0.28856 1 18833 11594 12961 13195 22244 22244 -0.0019027082944376161 HFFQDLAF 8 Unmodified _HFFQDLAF_ 0 0 0 nc|ENSG00000177873|Q8N2I2-2|ZNF619;nc|ENSG00000177873|Q8N2I2|ZNF619;ENST00000494154.6_1_3:40523704-40529729:+|nuORF;ENSG00000177873|ENST00000432264|ZNF619;nc|ENSG00000177873|Q8N2I2-4|ZNF619 nc|ENSG00000177873|Q8N2I2-2|ZNF619 nc|ENSG00000177873|Q8N2I2-2|ZNF619 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7481689453125 2 512.747985 1023.48142 0.86449 0.00044327 -0.6307 -0.00032339 0.23379 0.00011988 512.7476798976345 87.355 0.45798 81.179 80.999 81.457 -6.1757 37 24 2 0 0 0 0.72953 1 57542 57542 14.582 2.0501 1 14275000 18834 8713 12962 13196 22245 22245 -0.029384842740114436 HFFRRQFGMA 10 Unmodified _HFFRRQFGMA_ 0 0 0 REV__nc|ENSG00000163050|Q8NI60-3|COQ8A REV__nc|ENSG00000163050|Q8NI60-3|COQ8A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8853454589844 3 432.88547 1295.63458 NaN NaN NaN NaN NaN NaN NaN 26.356 1 26.324 25.824 26.824 -0.031708 0 0 0 0.99897 1 13550 13550 0.77653 0 1 + 18835 21719 12963 13197 22246 22246 -0.0014119242919150565 HFFTSRASLLD 11 Unmodified _HFFTSRASLLD_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS AL20221201_MKP_PDAC_01 4 431.8917236328125 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 2.6044 1 0.12243 -0.37757 0.62243 -2.482 0 0 0 0.94301 1 1326 1326 0.094841 0 1 18836 9967 12964 13198 22247 22247 0.01671586937777647 HFGASSGY 8 Unmodified _HFGASSGY_ 0 0 0 REV__nc|ENSG00000141503|Q8N4C8-5|MINK1 REV__nc|ENSG00000141503|Q8N4C8-5|MINK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1796569824219 2 413.179935 824.345317 NaN NaN NaN NaN NaN NaN NaN 20.801 1 20.801 20.301 21.301 0 0 0 0 0.97444 1 10484 10484 0.79363 0 1 + 18837 20540 12965 13199 22248 22248 -0.073881787846517 HFGASSGY 8 Unmodified _HFGASSGY_ 0 0 0 REV__nc|ENSG00000141503|Q8N4C8-5|MINK1 REV__nc|ENSG00000141503|Q8N4C8-5|MINK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.179931640625 2 413.179935 824.345317 NaN NaN NaN NaN NaN NaN NaN 87.932 1 87.428 86.928 87.928 -0.50423 0 0 0 0.97444 1 48096 48096 0.79363 0.19213 1 + 18838 20540 12965 13199 22249 22249 -0.073881787846517 HFGDVGCRVLF 11 Unmodified _HFGDVGCRVLF_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2089233398438 3 417.209731 1248.60736 NaN NaN NaN NaN NaN NaN NaN 28.2 1 28.153 27.653 28.653 -0.046408 0 0 0 0.94165 1 14551 14551 0.45452 0 1 18839 8971 12966 13200 22250 22250 -0.0069972076021258545 HFGFASIVY 9 Unmodified _HFGFASIVY_ 0 0 0 ENSG00000279111|ENST00000623167|OR10X1 ENSG00000279111|ENST00000623167|OR10X1 ENSG00000279111|ENST00000623167|OR10X1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7625122070312 2 520.763635 1039.51272 0.57276 0.00029827 -0.27752 -0.00014452 0.29524 0.00015375 520.7633228636028 63.486 0.32115 63.464 63.297 63.618 -0.021614 38 15 3 0 0 0 0.027803 1 34710 34710 56.541 6.8724 1 12908000 18840 10940 12967 13201 22251 22251 -0.005459112399194055 HFGVTLVSVI 10 Unmodified _HFGVTLVSVI_ 0 0 0 REV__ENSG00000174599|ENST00000310754|TRAM1L1 REV__ENSG00000174599|ENST00000310754|TRAM1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8787536621094 3 357.878087 1070.61243 1.9089 0.00068316 -0.20615 -7.3777E-05 1.7028 0.00060938 357.8780531508272 37.431 0.45974 33.147 32.974 33.434 -4.2835 62 27 3 0 0 0 0.62068 1 21930 21930 8.9762 0 1 48469000 + 18841 22803 12968 13202 22252 22252 0.07994906374051425 HFHFNEAL 8 Unmodified _HFHFNEAL_ 0 0 0 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 ENSG00000112379|ENST00000251691|ARFGEF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7437438964844 2 507.743234 1013.47191 NaN NaN NaN NaN NaN NaN NaN 70.721 1 70.721 70.221 71.221 0 0 0 0 0.95973 1 39398 39398 8.5933 0.68312 1 18842 2890 12969 13203 22253 22253 -0.034282525595244806 HFHPSVALF 9 Unmodified _HFHPSVALF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7784423828125 2 527.777077 1053.5396 0.048543 2.562E-05 -0.55783 -0.00029441 -0.50928 -0.00026879 527.7768444077107 54.329 0.42199 54.262 54.041 54.463 -0.066936 53 20 4 0 0 0 0.03327 2 29454 29454;29554 53.576 25.089 1 21585000 18843 3164 12970 13204 22254;22255 22254 0.014971973712817999 HFHPSVALF 9 Unmodified _HFHPSVALF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7772216796875 2 527.777077 1053.5396 1.0584 0.00055862 -0.091888 -4.8496E-05 0.96654 0.00051012 527.7765256385544 92.086 0.83553 85.911 85.596 86.431 -6.1757 105 49 3 0 0 0 0.019979 2 60826 60826;60946 63.563 33.338 1 66301000 18844 3164 12970 13204 22256;22257 22256 0.014971973712817999 HFHPSVALF 9 Unmodified _HFHPSVALF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MSMS AL20221201_MKP_PDAC_01 4 352.1864929199219 3 352.187143 1053.5396 NaN NaN NaN NaN NaN NaN NaN 92.054 1 85.879 85.379 86.379 -6.1757 0 0 0 0.13852 1 60866 60866 27.629 16.134 1 18845 3164 12970 13204 22258 22258 0.014971973712817999 HFIAEHYMF 9 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ HFIAEHYM(1)F HFIAEHYM(160)F 0 0 1 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7706909179688 2 605.771134 1209.52771 -0.25093 -0.00015201 -1.0056 -0.00060918 -1.2566 -0.00076118 605.7712604751259 44.536 0.21297 44.221 44.115 44.328 -0.31585 17 12 2 0 0 0 1.2707E-06 1 23734 23734 161.89 131.67 1 15953000 18846 5547 12971 13205 22259 22259 1016 -0.06866787434228172 HFIAEHYMF 9 Oxidation (M) _HFIAEHYM(Oxidation (M))F_ HFIAEHYM(1)F HFIAEHYM(130)F 0 0 1 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2730102539062 2 605.771134 1209.52771 0.58223 0.0003527 -0.34145 -0.00020684 0.24078 0.00014586 605.7709238405871 49.682 0.35949 44.143 44.034 44.393 -5.5391 35 22 2 0 0 0 0.0021514 1 31078 31078 131.3 108.15 1 20488000 18847 5547 12971 13205 22260 22260 1016 -0.06866787434228172 HFIAEHYMF 9 Unmodified _HFIAEHYMF_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7743530273438 2 597.773677 1193.5328 0.63833 0.00038158 0.26222 0.00015675 0.90055 0.00053833 597.7737709326807 86.101 0.64897 79.926 79.709 80.358 -6.1757 61 35 2 0 0 0 0.0082353 3 56901 56664;56766;56901 109.63 95.723 1 22146000 18848 5547 12971 13206 22261;22262;22263 22263 -0.05622483571619341 HFIDENKEL 9 Unmodified _HFIDENKEL_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.78271484375 2 572.785296 1143.55604 0.60424 0.0003461 -4.0484 -0.0023189 -3.4442 -0.0019728 572.7821103432509 53.491 0.22388 53.039 52.943 53.167 -0.45173 21 10 3 0 0 0 0.39863 1 28957 28957 12.532 0.89125 1 2340600 18849 550 12972 13207 22264 22264 -0.009997662532896356 HFIDENKEL 9 Unmodified _HFIDENKEL_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 572.785296 1143.55604 0.57884 0.00033155 -7.4691 -0.0042782 -6.8903 -0.0039467 572.7811525106968 52.935 0.26032 52.935 52.82 53.08 0 -0.052289 -0.00016922 NaN 12.532 32 12 3 NaN NaN NaN NaN 0 NaN NaN 0 8969800 18850 550 12972 13207 -0.009997662532896356 HFIECIFHF 9 Carbamidomethyl (C) _HFIEC(Carbamidomethyl (C))IFHF_ HFIEC(1)IFHF HFIEC(85)IFHF 0 1 0 ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2952270507812 2 625.294776 1248.575 0.71712 0.00044841 -0.96092 -0.00060086 -0.2438 -0.00015245 625.2945327051643 99.24 0.12225 93.064 92.99 93.113 -6.1757 15 6 3 0 0 0 0.0090851 1 66020 66020 85.357 34.502 1 67988000 18851 6122 12973 13208 22265 22265 611 -0.03934508163274586 HFIEIHHHL 9 Unmodified _HFIEIHHHL_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-4|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MSMS AL20221201_MKP_PDAC_01 4 394.8778076171875 3 394.87708 1181.60941 NaN NaN NaN NaN NaN NaN NaN 82.532 1 76.356 75.856 76.856 -6.1757 0 0 0 0.026323 1 54218 54218 71.922 44.293 1 18852 4037 12974 13209 22266 22266 0.025870760398902348 HFIFRHKN 8 Unmodified _HFIFRHKN_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7550659179688 2 549.801417 1097.58828 0.44227 0.00024316 -0.012089 -6.6465E-06 0.43019 0.00023652 550.3023687933843 40.407 0.21296 40.412 40.316 40.529 0.0050545 13 9 2 0 0 0 8.7369 1 21589 21589 9.3474 0 1 2900200 18853 3984 12975 13210 22267 22267 0.04339110731029905 HFIKGGGMSHI 11 Unmodified _HFIKGGGMSHI_ 0 0 0 REV__ENST00000368657.7_1_6:112400794-112408637:-|nuORF REV__ENST00000368657.7_1_6:112400794-112408637:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.2071228027344 3 395.206209 1182.5968 NaN NaN NaN NaN NaN NaN NaN 94.339 1 88.163 87.663 88.663 -6.1757 0 0 0 0.93224 1 62483 62483 2.6312 0 1 + 18854 26017 12976 13211 22268 22268 0.01280296585355245 HFILEEAI 8 Unmodified _HFILEEAI_ 0 0 0 ENSG00000083720|ENST00000196371|OXCT1 ENSG00000083720|ENST00000196371|OXCT1 ENSG00000083720|ENST00000196371|OXCT1 MSMS AL20221201_MKP_PDAC_01 4 486.2648010253906 2 486.263468 970.512382 NaN NaN NaN NaN NaN NaN NaN 33.407 1 29.422 28.922 29.922 -3.9853 0 0 0 0.47265 1 19158 19158 42.968 6.5019 1 18855 1370 12977 13212 22269 22269 0.025946690402406603 HFILHIFEH 9 Unmodified _HFILHIFEH_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|110|2|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|110|2|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|110|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2152404785156 3 398.213581 1191.61891 NaN NaN NaN NaN NaN NaN NaN 19.756 1 19.756 19.256 20.256 0 0 0 0 0.85737 1 9904 9904 0.26902 0.1097 1 18856 15916 12978 13213 22270 22270 0.030768443254146405 HFIPYNAKF 9 Unmodified _HFIPYNAKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.799560546875 2 568.798009 1135.58147 0.523 0.00029748 0.41114 0.00023385 0.93413 0.00053133 568.7986220549521 46.149 0.21472 45.812 45.743 45.957 -0.33664 22 10 3 0 0 0 0.012148 1 24689 24689 74.423 56.05 1 8636900 18857 5603 12979 13214 22271 22271 0.01909753059794639 HFIPYNAKF 9 Unmodified _HFIPYNAKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7986450195312 2 568.798009 1135.58147 0.43714 0.00024864 0.50287 0.00028603 0.94001 0.00053468 568.7981588474933 45.919 0.54837 45.891 45.681 46.229 -0.028011 93 25 5 0 0 0 0.0067112 3 24607 24607;24717;24818 112.59 87.194 1 220830000 18858 5603 12979 13214 22272;22273;22274 22272 0.01909753059794639 HFIPYNAKF 9 Unmodified _HFIPYNAKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5348815917969 3 379.534431 1135.58147 0.31589 0.00011989 -0.56519 -0.00021451 -0.2493 -9.4619E-05 379.5344178190257 45.869 0.23819 45.841 45.782 46.02 -0.028015 14 10 2 0 0 0 0.12841 1 24674 24674 21.537 15.754 1 2051900 18859 5603 12979 13214 22275 22275 0.01909753059794639 HFIPYNAKF 9 Unmodified _HFIPYNAKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MSMS AL20221201_MKP_PDAC_01 4 568.7989501953125 2 568.798009 1135.58147 NaN NaN NaN NaN NaN NaN NaN 68.63 1 62.454 61.954 62.954 -6.1757 0 0 0 0.0099616 1 44803 44803 92.822 67.423 1 18860 5603 12979 13214 22276 22276 0.01909753059794639 HFIPYNAKF 9 Unmodified _HFIPYNAKF_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.2100219726562 3 379.534431 1135.58147 1.0354 0.00039297 -0.25706 -9.7564E-05 0.77833 0.0002954 379.534300838865 51.712 0.24031 46.052 45.901 46.141 -5.66 23 14 2 0 0 0 0.19613 1 32531 32531 8.1555 6.0695 1 39566000 18861 5603 12979 13214 22277 22277 0.01909753059794639 HFKIHVRKS 9 Unmodified _HFKIHVRKS_ 0 0 0 nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18 nc|ENSG00000163071|Q8TC71-2|SPATA18 nc|ENSG00000163071|Q8TC71-2|SPATA18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3427124023438 2 576.343449 1150.67235 NaN NaN NaN NaN NaN NaN NaN 103.59 1 103.54 103.04 104.04 -0.047928 0 0 0 0.85798 1 57528 57528 0.52476 0 1 18862 6947 12980 13215 22278 22278 0.10303641827931642 HFKLWLPRN 9 Unmodified _HFKLWLPRN_ 0 0 0 REV__nc|ENSG00000163508|O95936|EOMES REV__nc|ENSG00000163508|O95936|EOMES MSMS AL20221201_MKP_PDAC_01 4 404.2324523925781 3 404.232975 1209.6771 NaN NaN NaN NaN NaN NaN NaN 82.719 1 76.544 76.044 77.044 -6.1757 0 0 0 0.82739 1 54353 54353 2.4985 0 1 + 18863 21772 12981 13216 22279 22279 0.08064525970689829 HFKQHKRL 8 Unmodified _HFKQHKRL_ 0 0 0 REV__nc|ENSG00000131849|P52740-2|ZNF132 REV__nc|ENSG00000131849|P52740-2|ZNF132 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.21728515625 3 365.217437 1092.63048 -0.6004 -0.00021927 -0.57737 -0.00021087 -1.1778 -0.00043014 365.2172176595075 16.236 0.13326 16.236 16.16 16.293 0 70 39 2 0 0 0 0.80383 1 7867 7867 4.3292 4.3292 1 1976000 + 18864 19816 12982 13217 22280 22280 0.08787086139409439 HFKQHKRL 8 Unmodified _HFKQHKRL_ 0 0 0 REV__nc|ENSG00000131849|P52740-2|ZNF132 REV__nc|ENSG00000131849|P52740-2|ZNF132 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2171936035156 3 365.217437 1092.63048 -0.5725 -0.00020909 -0.14288 -5.2184E-05 -0.71538 -0.00026127 365.2173556628559 16.657 0.10856 16.658 16.606 16.715 0.0010548 59 28 3 0 0 0 0.79887 1 8214 8214 7.2892 0.18751 1 962220 + 18865 19816 12982 13217 22281 22281 0.08787086139409439 HFKQHKRL 8 Unmodified _HFKQHKRL_ 0 0 0 REV__nc|ENSG00000131849|P52740-2|ZNF132 REV__nc|ENSG00000131849|P52740-2|ZNF132 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2174377441406 3 365.217437 1092.63048 -0.018897 -6.9017E-06 -0.42435 -0.00015498 -0.44324 -0.00016188 365.21713528027846 16.286 0.16185 16.291 16.216 16.378 0.0050564 24 11 3 0 0 0 0.80447 1 8154 8154 3.9444 0.35734 1 1236200 + 18866 19816 12982 13217 22282 22282 0.08787086139409439 HFKQHKRL 8 Unmodified _HFKQHKRL_ 0 0 0 REV__nc|ENSG00000131849|P52740-2|ZNF132 REV__nc|ENSG00000131849|P52740-2|ZNF132 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 365.217437 1092.63048 -0.6004 -0.00021927 -0.57737 -0.00021087 -1.1778 -0.00043014 365.2172176595075 16.236 0.13326 16.236 16.16 16.293 0 -0.027402 -7.8773E-05 NaN 4.3292 70 39 2 NaN NaN NaN NaN 0 NaN NaN 0 1976000 + 18867 19816 12982 13217 0.08787086139409439 HFLDEWLYK 9 Unmodified _HFLDEWLYK_ 0 0 0 ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000473294.6_1_1:33098913-33099651:-|nuORF ENST00000473294.6_1_1:33098913-33099651:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.813720703125 2 625.813856 1249.61316 0.90444 0.00056601 -0.55639 -0.0003482 0.34805 0.00021781 625.8134256176145 57.198 0.34103 57.132 56.998 57.339 -0.066036 50 16 4 0 0 0 0.10734 1 31211 31211 32.305 15.193 1 29407000 18868 8580 12983 13218 22283 22283 -0.0016629897691018414 HFLDRHLVF 9 Unmodified _HFLDRHLVF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENST00000519030.5_1_8:109252301-109260916:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2173156738281 3 395.217214 1182.62981 0.065757 2.5988E-05 0.92316 0.00036485 0.98892 0.00039084 395.2173175765721 51.25 0.2154 50.837 50.68 50.896 -0.41351 15 10 2 0 0 0 0.43463 1 27614 27614 10.8 5.9025 1 1203400 18869 2203 12984 13219 22284 22284 0.04580246699674717 HFLDRHLVF 9 Unmodified _HFLDRHLVF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENST00000519030.5_1_8:109252301-109260916:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2167358398438 3 395.217214 1182.62981 0.39352 0.00015553 -1.0034 -0.00039656 -0.60988 -0.00024104 395.2172539877185 50.823 0.69662 50.769 50.53 51.226 -0.053871 86 34 4 0 0 0 0.12424 1 27453 27453 22.658 17.761 1 30298000 18870 2203 12984 13219 22285 22285 0.04580246699674717 HFLDRHLVF 9 Unmodified _HFLDRHLVF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF;ENST00000519030.5_1_8:109252301-109260916:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2181701660156 3 395.217214 1182.62981 1.3772 0.00054431 0.84021 0.00033207 2.2174 0.00087637 395.2180114149436 96.167 0.57365 89.992 89.696 90.27 -6.1757 76 34 3 0 0 0 0.19127 2 63640 63640;63767 17.443 12.546 1 12512000 18871 2203 12984 13219 22286;22287 22286 0.04580246699674717 HFLDVERIV 9 Unmodified _HFLDVERIV_ 0 0 0 ENST00000338592.5_1_7:65617312-65617492:+|nuORF ENST00000338592.5_1_7:65617312-65617492:+|nuORF ENST00000338592.5_1_7:65617312-65617492:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.756591796875 3 376.545108 1126.61349 0.74895 0.00028201 2.2133 0.00083342 2.9623 0.0011154 376.5456195896406 57.551 0.35443 57.485 57.259 57.614 -0.066036 28 17 2 0 0 0 0.20528 1 31275 31275 5.2969 0.96765 1 4944400 18872 11940 12985 13220 22288 22288 0.05525120742936451 HFLEPVWPL 9 Unmodified _HFLEPVWPL_ 0 0 0 ENST00000488033.5_1_3:121372652-121379717:-|nuORF ENST00000488033.5_1_3:121372652-121379717:-|nuORF ENST00000488033.5_1_3:121372652-121379717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2459716796875 2 569.30821 1136.60187 0.66301 0.00037746 2.1379 0.0012171 2.8009 0.0015946 569.3100947197095 44.103 0.24159 39.338 39.139 39.381 -4.7648 20 15 2 0 0 0 0.41742 1 26779 26779 11.64 2.2929 1 8313000 18873 14214 12986 13221 22289 22289 0.039029237196018585 HFLEQHPLL 9 Unmodified _HFLEQHPLL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.310546875 2 567.308741 1132.60293 0.73304 0.00041586 0.19703 0.00011178 0.93007 0.00052764 567.30922104187 47.989 0.17442 47.637 47.516 47.69 -0.3526 12 8 2 0 0 0 0.0093064 1 25747 25747 81.89 53.403 1 4184100 18874 2282 12987 13222 22290 22290 0.04193138088521664 HFLLPYLCI 9 Unmodified _HFLLPYLCI_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|251|2|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|251|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8057250976562 2 559.806988 1117.59942 1.5128 0.0008469 -1.1477 -0.00064249 0.36514 0.00020441 559.8061990027506 71.133 0.34064 71.169 71.021 71.361 0.035545 29 14 3 0 0 0 0.1492 1 39166 39166 28.173 6.6363 1 1912200 + 18875 29428 12988 13223 22291 22291 0.04532751990291217 HFLLSCLLCV 10 Unmodified _HFLLSCLLCV_ 0 0 0 REV__nc|ENSG00000147654|O00559-2|EBAG9 REV__nc|ENSG00000147654|O00559-2|EBAG9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2050170898438 3 383.204929 1146.59296 NaN NaN NaN NaN NaN NaN NaN 73.766 1 73.766 73.266 74.266 0 0 0 0 0.99897 1 41064 41064 0.77653 0 1 + 18876 29693 12989 13224 22292 22292 0.02552490767288873 HFLRRQYWHWL 11 Unmodified _HFLRRQYWHWL_ 0 0 0 ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 821.4338989257812 2 821.431119 1640.84768 0.022553 1.8525E-05 1.5991 0.0013136 1.6217 0.0013321 821.4327069295191 71.002 0.24816 70.524 70.411 70.659 -0.47735 22 10 3 0 0 0 0.74157 1 38826 38826 0.35063 0.35063 1 958620 18877 14631 12990 13225 22293 22293 0.052894366221607925 HFLRRQYWHWL 11 Unmodified _HFLRRQYWHWL_ 0 0 0 ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 821.431119 1640.84768 1.015 0.00083373 1.9594 0.0016095 2.9744 0.0024433 821.9333192661425 70.524 0.23328 70.559 70.444 70.678 0.035515 0.017551 0.00046433 NaN 0.35063 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1486400 18878 14631 12990 13225 0.052894366221607925 HFLRTAKW 8 Unmodified _HFLRTAKW_ 0 0 0 REV__nc|ENSG00000119599|Q8WV16-2|DCAF4 REV__nc|ENSG00000119599|Q8WV16-2|DCAF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7987060546875 2 529.798343 1057.58213 0.33708 0.00017859 -0.2453 -0.00012996 0.091787 4.8628E-05 529.7983403013773 93.221 0.33214 92.764 92.599 92.931 -0.4574 31 14 3 0 0 0 0.80975 1 51028 51028 0.79363 0 1 1041900 + 18879 19196 12991 13226 22294 22294 0.05564592499490573 HFLVDNSVF 9 Unmodified _HFLVDNSVF_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2722778320312 2 539.271824 1076.5291 NaN NaN NaN NaN NaN NaN NaN 66.597 1 66.114 65.614 66.614 -0.48323 0 0 0 0.17247 1 36370 36370 34.102 24.755 1 18880 3065 12992 13227 22295 22295 -0.006108300738333128 HFLVLMLW 8 Unmodified _HFLVLMLW_ 0 0 0 ENST00000366955.7_1_1:214818152-214818242:+|nuORF ENST00000366955.7_1_1:214818152-214818242:+|nuORF ENST00000366955.7_1_1:214818152-214818242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.29443359375 2 529.796423 1057.57829 0.34478 0.00018267 -2.3321 -0.0012355 -1.9873 -0.0010529 530.2956285030565 92.678 0.44662 92.221 91.971 92.417 -0.45741 51 20 4 0 0 0 0.80799 1 50696 50696 2.8892 2.0956 1 1661700 18881 12217 12993 13228 22296 22296 0.05180786681421523 HFMDEFFEQV 10 Unmodified _HFMDEFFEQV_ 0 0 0 nc|ENSG00000099365|P61266-2|STX1B;ENSG00000099365|ENST00000215095|STX1B nc|ENSG00000099365|P61266-2|STX1B nc|ENSG00000099365|P61266-2|STX1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.525634765625 3 443.525384 1327.55432 -0.34833 -0.00015449 -0.73659 -0.0003267 -1.0849 -0.00048119 443.5253859125945 34.653 0.19262 34.653 34.56 34.753 0 17 9 3 0 0 0 0.69917 1 18287 18287 1.4551 0 1 2524200 18882 1697 12994 13229 22297 22297 -0.09635143333548513 HFMGSLSVLC 10 Unmodified _HFMGSLSVLC_ 0 0 0 nc|ENSG00000187720|Q6ZMP0-2|THSD4;ENSG00000187720|ENST00000261862|THSD4 nc|ENSG00000187720|Q6ZMP0-2|THSD4 nc|ENSG00000187720|Q6ZMP0-2|THSD4 MSMS AL20221201_MKP_PDAC_01 4 365.1788940429688 3 365.17715 1092.50962 NaN NaN NaN NaN NaN NaN NaN 32.907 1 29.051 28.551 29.551 -3.8562 0 0 0 0.83398 1 18818 18818 6.1918 1.8626 1 18883 9586 12995 13230 22298 22298 -0.03293245680583823 HFMHQKLGIAY 11 Unmodified _HFMHQKLGIAY_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8484497070312 2 672.847707 1343.68086 0.46679 0.00031408 -0.96717 -0.00065076 -0.50038 -0.00033668 672.8474243184091 87.199 0.29529 86.695 86.516 86.812 -0.50423 23 11 3 0 0 0 0.73115 1 47660 47660 1.3295 0.13619 1 438620 18884 4751 12996 13231 22299 22299 0.02276827682271687 HFMKKINF 8 Unmodified _HFMKKINF_ 0 0 0 REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82 REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.287841796875 2 532.78913 1063.56371 1.0253 0.00054628 0.67205 0.00035806 1.6974 0.00090434 532.7904900849459 50.499 1.5046 44.96 44.377 45.881 -5.5391 261 94 4 0 0 0 0.65867 1 32331 32331 20.871 5.103 1 351410000 + 18885 28434 12997 13232 22300 22300 0.034467145332882865 HFMLDGGNVF 10 Unmodified _HFMLDGGNVF_ 0 0 0 REV__nc|ENSG00000027075|P24723-2|PRKCH REV__nc|ENSG00000027075|P24723-2|PRKCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5108337402344 3 379.511298 1135.51206 -0.52236 -0.00019824 0.68614 0.0002604 0.16378 6.2158E-05 379.5113276469293 28.895 0.22046 28.895 28.781 29.002 0 25 10 3 0 0 0 0.69126 1 14931 14931 3.8763 0.88109 1 3275300 + 18886 17132 12998 13233 22301 22301 -0.05027073951282546 HFMLDGGNVYE 11 Unmodified _HFMLDGGNVYE_ 0 0 0 REV__nc|ENSG00000067606|Q05513-2|PRKCZ REV__nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.2810668945312 2 641.282063 1280.54957 0.064745 4.152E-05 -3.3359 -0.0021392 -3.2711 -0.0020977 641.2797436374071 58.165 0.16179 57.676 57.598 57.76 -0.48974 9 7 2 0 0 0 0.59689 1 31640 31640 11.495 2.1116 1 1927100 + 18887 17422 12999 13234 22302 22302 -0.07948027476300012 HFPAPHPC 8 Unmodified _HFPAPHPC_ 0 0 0 REV__ENST00000551915.5_1_12:83080798-83081008:+|nuORF REV__ENST00000551915.5_1_12:83080798-83081008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2091979980469 2 453.207973 904.401392 NaN NaN NaN NaN NaN NaN NaN 95.078 1 95.078 94.578 95.578 0 0 0 0 0.97444 1 52558 52558 0.79363 0 1 + 18888 28720 13000 13235 22303 22303 -0.05463249148851901 HFPELLISPS 10 Unmodified _HFPELLISPS_ 0 0 0 REV__ENST00000399640.3_1_8:134471412-134471994:-|nuORF REV__ENST00000399640.3_1_8:134471412-134471994:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7652587890625 2 570.308406 1138.60226 0.45102 0.00025722 1.6142 0.00092061 2.0652 0.0011778 570.309375973382 58.943 0.25534 58.452 58.369 58.625 -0.49079 16 11 2 0 0 0 0.23325 1 32099 32099 10.074 5.3179 1 1074500 + 18889 26586 13001 13236 22304 22304 0.03850298648808348 HFPEPWAYP 9 Unmodified _HFPEPWAYP_ 0 0 0 ENST00000339728.5_1_2:235403839-235404196:-|nuORF ENST00000339728.5_1_2:235403839-235404196:-|nuORF ENST00000339728.5_1_2:235403839-235404196:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8477783203125 3 381.846787 1142.51853 NaN NaN NaN NaN NaN NaN NaN 17.988 1 17.988 17.488 18.488 0 0 0 0 0.85737 1 8910 8910 0.26902 0 1 18890 11953 13002 13237 22305 22305 -0.047028127282374044 HFPFFPRRIWP 11 Unmodified _HFPFFPRRIWP_ 0 0 0 REV__ENSG00000109846|ENST00000650687|CRYAB REV__ENSG00000109846|ENST00000650687|CRYAB MSMS AL20221201_MKP_PDAC_01 4 500.6084289550781 3 500.606813 1498.79861 NaN NaN NaN NaN NaN NaN NaN 12.207 1 9.7252 9.2252 10.225 -2.482 0 0 0 0.93694 1 6166 6166 4.7159 0.59929 1 + 18891 18674 13003 13238 22306 22306 0.06916148333220917 HFPFFPRRIWP 11 Unmodified _HFPFFPRRIWP_ 0 0 0 REV__ENSG00000109846|ENST00000650687|CRYAB REV__ENSG00000109846|ENST00000650687|CRYAB MSMS AL20221201_MKP_PDAC_01 4 500.6083068847656 3 500.606813 1498.79861 NaN NaN NaN NaN NaN NaN NaN 12.416 1 9.9341 9.4341 10.434 -2.482 0 0 0 0.94165 1 6278 6278 1.3296 1.1703 1 + 18892 18674 13003 13238 22307 22307 0.06916148333220917 HFPKRIRIV 9 Unmodified _HFPKRIRIV_ 0 0 0 REV__ENSG00000055950|ENST00000318364|MRPL43 REV__ENSG00000055950|ENST00000318364|MRPL43 MSMS AL20221201_MKP_PDAC_01 4 583.3695068359375 2 583.369467 1164.72438 NaN NaN NaN NaN NaN NaN NaN 106.46 1 100.29 99.788 100.79 -6.1757 0 0 0 0.85737 1 71262 71262 0.6015 0 1 + 18893 17291 13004 13239 22308 22308 0.14860805241687558 HFPLPGQSGKA 11 Unmodified _HFPLPGQSGKA_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2046203613281 3 380.204974 1137.59309 NaN NaN NaN NaN NaN NaN NaN 77.125 1 77.125 76.625 77.625 0 0 0 0 0.94184 1 42877 42877 0.40827 0 1 + 18894 23315 13005 13240 22309 22309 0.029799500831586556 HFPMKEWTPF 10 Unmodified _HFPMKEWTPF_ 0 0 0 REV__ENSG00000183166|ENST00000395275|CALN1 REV__ENSG00000183166|ENST00000395275|CALN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5452575683594 3 440.546231 1318.61686 NaN NaN NaN NaN NaN NaN NaN 50.02 1 49.971 49.471 50.471 -0.048824 0 0 0 0.96627 1 27045 27045 2.086 0.63089 1 + 18895 23328 13006 13241 22310 22310 -0.029699524747002215 HFPQDLWAEQD 11 Unmodified _HFPQDLWAEQD_ 0 0 0 ENSG00000197020|ENST00000358296|ZNF100 ENSG00000197020|ENST00000358296|ZNF100 ENSG00000197020|ENST00000358296|ZNF100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.3093872070312 2 693.309666 1384.60478 0.56877 0.00039433 0.6209 0.00043048 1.1897 0.00082481 693.310214643892 47.525 0.24321 47.173 47.085 47.328 -0.3526 24 11 4 0 0 0 0.66968 1 25465 25465 7.1017 0 1 5860800 18896 9897 13007 13242 22311 22311 -0.07213897684187032 HFPRCHYSD 9 Unmodified _HFPRCHYSD_ 0 0 0 ENST00000431717.6_2_3:111812256-111821694:+|nuORF ENST00000431717.6_2_3:111812256-111821694:+|nuORF ENST00000431717.6_2_3:111812256-111821694:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8345642089844 3 387.834664 1160.48216 -0.54315 -0.00021065 0.73798 0.00028621 0.19483 7.5562E-05 387.83499654765217 16.846 0.17722 16.847 16.781 16.958 0.0010548 119 55 3 0 0 0 0.61256 1 8318 8318 0.26902 0 1 1916900 18897 13266 13008 13243 22312 22312 -0.09166012896616849 HFPTESRWL 9 Unmodified _HFPTESRWL_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5333251953125 3 391.533091 1171.57744 0.18999 7.4389E-05 0.31356 0.00012277 0.50356 0.00019716 391.53315980573217 59.916 0.18385 59.862 59.754 59.938 -0.053062 13 8 2 0 0 0 0.53666 1 32697 32697 2.9952 0 1 3674900 + 18898 24000 13009 13244 22313 22313 -0.0014833643388101336 HFQCKRCKKSF 11 Unmodified _HFQCKRCKKSF_ 0 0 0 ENSG00000261678|ENST00000569446|SCRT1 ENSG00000261678|ENST00000569446|SCRT1 ENSG00000261678|ENST00000569446|SCRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.808837890625 2 706.357916 1410.70128 NaN NaN NaN NaN NaN NaN NaN 97.308 1 97.066 96.566 97.566 -0.24277 0 0 0 0.94307 1 53136 53136 0.30703 0 1 18899 10843 13010 13245 22314 22314 0.012356750703702346 HFQELYKADRS 11 Unmodified _HFQELYKADRS_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2320251464844 3 465.233481 1392.67861 0.022561 1.0496E-05 -0.40765 -0.00018965 -0.38509 -0.00017916 465.2334372062562 35.147 0.1708 35.174 35.082 35.253 0.027401 10 7 2 0 0 0 0.631 1 18567 18567 9.7643 5.3581 1 3080200 18900 2541 13011 13246 22315 22315 -0.0020192952188153868 HFQREIDTL 9 Unmodified _HFQREIDTL_ 0 0 0 REV__ENSG00000132915|ENST00000255266|PDE6A;REV__ENSG00000133256|ENST00000496514|PDE6B REV__ENSG00000133256|ENST00000496514|PDE6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8685607910156 3 386.86825 1157.58292 0.064467 2.494E-05 0.15374 5.9475E-05 0.2182 8.4416E-05 386.8683130821235 28.626 0.21013 28.655 28.52 28.73 0.029564 13 7 2 0 0 0 0.55775 1 14918 14918 2.2828 0.5405 1 2695400 + 18901 19891;19918 13012 13247 22316 22316 0.010433423579115697 HFQVELCI 8 Unmodified _HFQVELCI_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7482299804688 2 494.74967 987.484787 0.79615 0.00039389 -0.37905 -0.00018753 0.4171 0.00020636 494.74877097154337 38.264 0.49294 33.895 33.581 34.074 -4.3689 36 29 2 0 0 0 0.57045 1 22427 22427 28.487 6.7402 1 23773000 18902 1775 13013 13248 22317 22317 -0.009455574916501064 HFQVELCI 8 Unmodified _HFQVELCI_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 494.74967 987.484787 0.79615 0.00039389 -0.37905 -0.00018753 0.4171 0.00020636 494.74877097154337 38.264 0.49294 33.895 33.581 34.074 -4.3689 0.018997 -0.0012779 NaN 28.487 36 29 2 NaN NaN NaN NaN 0 NaN NaN 0 23773000 18903 1775 13013 13248 -0.009455574916501064 HFQVGARVH 9 Unmodified _HFQVGARVH_ 0 0 0 REV__nc|ENSG00000087884|Q9H7C9-2|AAMDC REV__nc|ENSG00000087884|Q9H7C9-2|AAMDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.24560546875 2 525.783225 1049.5519 0.45971 0.00024171 0.42163 0.00022168 0.88133 0.00046339 525.7834867722931 37.857 0.36216 37.857 37.786 38.148 0 23 17 2 0 0 0 0.18118 1 20203 20203 18.135 7.9516 1 2050000 + 18904 29519 13014 13249 22318 22318 0.029102338343363954 HFQVGARVH 9 Unmodified _HFQVGARVH_ 0 0 0 REV__nc|ENSG00000087884|Q9H7C9-2|AAMDC REV__nc|ENSG00000087884|Q9H7C9-2|AAMDC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 525.783225 1049.5519 -0.07759 -4.0796E-05 -3.2206 -0.0016933 -3.2981 -0.0017341 525.7812984743108 38.342 0.18417 38.056 37.908 38.092 -0.28687 0.099405 -0.0034543 NaN 18.135 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 959840 + 18905 29519 13014 13249 0.029102338343363954 HFRISFNF 8 Unmodified _HFRISFNF_ 0 0 0 REV__ENST00000526288.1_1_11:28119059-28119494:-|nuORF REV__ENST00000526288.1_1_11:28119059-28119494:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7706298828125 2 534.274701 1066.53485 -0.036635 -1.9573E-05 1.4382 0.00076841 1.4016 0.00074883 534.7780982291092 38.455 0.19078 38.168 38.048 38.239 -0.28687 17 8 3 0 0 0 8.7369 1 20227 20227 5.2307 0 1 1312600 + 18906 28366 13015 13250 22319 22319 0.004243132284955209 HFRKYRGK 8 Unmodified _HFRKYRGK_ 0 0 0 REV__ENSG00000076650|ENST00000170564|GPATCH1 REV__ENSG00000076650|ENST00000170564|GPATCH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8661499023438 3 364.545553 1090.61483 0.83295 0.00030365 -1.5016 -0.00054741 -0.66867 -0.00024376 364.5450234950036 26.223 0.2622 23.272 23.078 23.34 -2.9511 20 14 2 0 0 0 8.7369 1 14421 14421 1.6526 0.78825 1 5738600 + 18907 17593 13016 13251 22320 22320 0.07314799622372448 HFRRERFRTF 10 Unmodified _HFRRERFRTF_ 0 0 0 REV__nc|ENSG00000111641|P46087-3|NOP2 REV__nc|ENSG00000111641|P46087-3|NOP2 MSMS AL20221201_MKP_PDAC_01 4 726.3907470703125 2 726.391993 1450.76943 NaN NaN NaN NaN NaN NaN NaN 79.28 1 73.104 72.604 73.604 -6.1757 0 0 0 0.78298 1 51941 51941 13.042 3.6593 1 + 18908 18758 13017 13252 22321 22321 0.062080040368982736 HFSAFRIL 8 Unmodified _HFSAFRIL_ 0 0 0 ENST00000485825.1_1_7:107215546-107218002:+|nuORF ENST00000485825.1_1_7:107215546-107218002:+|nuORF ENST00000485825.1_1_7:107215546-107218002:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2964477539062 2 495.779619 989.544686 NaN NaN NaN NaN NaN NaN NaN 93.193 1 92.736 92.236 93.236 -0.4574 0 0 0 0.9706 1 50932 50932 6.3541 0 1 18909 14173 13018 13253 22322 22322 0.049495012338979905 HFSEPRQFSP 10 Unmodified _HFSEPRQFSP_ 0 0 0 REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF REV__ENST00000331434.6_1_8:146277861-146278117:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 616.2955932617188 2 616.296362 1230.57817 NaN NaN NaN NaN NaN NaN NaN 21.242 1 18.55 18.05 19.05 -2.693 0 0 0 0.97302 1 11352 11352 3.5965 0.31518 1 + 18910 25603 13019 13254 22323 22323 -0.027895417848640136 HFSFREYF 8 Unmodified _HFSFREYF_ 0 0 0 REV__ENSG00000129673|ENST00000392492|AANAT REV__ENSG00000129673|ENST00000392492|AANAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1775207519531 3 378.178536 1131.51378 NaN NaN NaN NaN NaN NaN NaN 28.811 1 28.749 28.249 29.249 -0.062159 0 0 0 0.97444 1 14883 14883 3.9444 0.35734 1 + 18911 19679 13020 13255 22324 22324 -0.04671696871014319 HFSFREYF 8 Unmodified _HFSFREYF_ 0 0 0 REV__ENSG00000129673|ENST00000392492|AANAT REV__ENSG00000129673|ENST00000392492|AANAT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5687255859375 3 378.178536 1131.51378 0.16045 6.0678E-05 -0.37062 -0.00014016 -0.21017 -7.9481E-05 378.5125646020784 28.25 0.14247 28.279 28.212 28.354 0.029564 7 5 2 0 0 0 8.7369 1 14699 14699 7.2892 1.0974 1 1531400 + 18912 19679 13020 13255 22325 22325 -0.04671696871014319 HFSHAGALF 9 Unmodified _HFSHAGALF_ 0 0 0 nc|ENSG00000005889|P17010-3|ZFX;nc|ENSG00000005889|P17010-2|ZFX;nc|ENSG00000067646|P08048-2|ZFY;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY nc|ENSG00000005889|P17010-3|ZFX;nc|ENSG00000067646|P08048-3|ZFY nc|ENSG00000005889|P17010-3|ZFX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7455749511719 2 493.745776 985.477 NaN NaN NaN NaN NaN NaN NaN 38.361 1 38.379 37.879 38.879 0.01704 0 0 0 0.36554 1 20396 20396 21.747 3.6117 1 18913 16009;962 13021 13256 22326 22326 -0.016319486969109676 HFSIISHF 8 Unmodified _HFSIISHF_ 0 0 0 REV__ENST00000546361.6_1_19:16628883-16629183:-|nuORF REV__ENST00000546361.6_1_19:16628883-16629183:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2555541992188 2 494.255977 986.497401 -0.25524 -0.00012615 0.44909 0.00022196 0.19385 9.5811E-05 494.25624296140245 36.553 0.23079 36.304 36.152 36.383 -0.2497 16 10 2 0 0 0 0.44122 1 19168 19168 40.449 4.4044 1 4310600 + 18914 28659 13022 13257 22327 22327 0.0036122196290762076 HFSTESVP 8 Unmodified _HFSTESVP_ 0 0 0 nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2;ENST00000488619.1_1_1:46468498-46472068:+|nuORF;ENST00000482881.1_1_1:46425082-46476635:+|nuORF nc|ENSG00000086015|Q6P0Q8-2|MAST2 nc|ENSG00000086015|Q6P0Q8-2|MAST2 MSMS AL20221201_MKP_PDAC_01 4 452.2142944335938 2 452.213975 902.413397 NaN NaN NaN NaN NaN NaN NaN 16.347 1 13.79 13.29 14.29 -2.557 0 0 0 0.73801 1 8463 8463 26.341 0 1 18915 1426 13023 13258 22328 22328 -0.04171353924652976 HFSTESVPDE 10 Unmodified _HFSTESVPDE_ 0 0 0 nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2;ENST00000488619.1_1_1:46468498-46472068:+|nuORF;ENST00000482881.1_1_1:46425082-46476635:+|nuORF nc|ENSG00000086015|Q6P0Q8-2|MAST2 nc|ENSG00000086015|Q6P0Q8-2|MAST2 MSMS AL20221201_MKP_PDAC_01 4 383.1683959960938 3 383.168254 1146.48293 NaN NaN NaN NaN NaN NaN NaN 54.055 1 48.19 47.69 48.69 -5.8653 0 0 0 0.7417 1 34239 34239 12.873 3.8964 1 18916 1426 13024 13259 22329 22329 -0.084449397665594 HFSVGGLL 8 Unmodified _HFSVGGLL_ 0 0 0 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2324829101562 2 415.231971 828.449388 0.25896 0.00010753 1.2807 0.00053177 1.5396 0.0006393 415.23249860214054 46.592 0.25753 46.592 46.461 46.718 0 20 11 2 0 0 0 0.5953 1 25470 25470 26.341 0 1 2028800 18917 6958 13025 13260 22330 22330 0.02830148042869496 HFSYAHRVL 9 Unmodified _HFSYAHRVL_ 0 0 0 REV__ENSG00000204347|ENST00000375366|BTBD17 REV__ENSG00000204347|ENST00000375366|BTBD17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2021179199219 3 377.201564 1128.58286 NaN NaN NaN NaN NaN NaN NaN 24.953 1 24.977 24.477 25.477 0.024429 0 0 0 0.7453 1 12892 12892 8.1555 0.54658 1 + 18918 24161 13026 13261 22331 22331 0.023713871485597338 HFTIFLIRL 9 Unmodified _HFTIFLIRL_ 0 0 0 REV__ENST00000545314.5_1_1:65696457-65696658:+|nuORF REV__ENST00000545314.5_1_1:65696457-65696658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2373352050781 3 387.237726 1158.69135 -0.056436 -2.1854E-05 -0.099304 -3.8454E-05 -0.15574 -6.0308E-05 387.23760431120985 51.663 0.23759 51.604 51.494 51.731 -0.058918 22 11 3 0 0 0 0.58499 1 27990 27990 2.2828 0 1 2063000 + 18919 28646 13027 13262 22332 22332 0.11835178398973767 HFVAIFML 8 Unmodified _HFVAIFML_ 0 0 0 REV__ENST00000507419.5_1_5:133984013-133984100:-|nuORF REV__ENST00000507419.5_1_5:133984013-133984100:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2688293457031 2 489.267499 976.520445 NaN NaN NaN NaN NaN NaN NaN 77.49 1 77.007 76.507 77.507 -0.4826 0 0 0 0.97444 1 42422 42422 2.8892 0 1 + 18920 28102 13028 13263 22333 22333 0.031245247560264033 HFVEDKDYV 9 Unmodified _HFVEDKDYV_ 0 0 0 REV__ENSG00000129518|ENST00000250454|EAPP REV__ENSG00000129518|ENST00000250454|EAPP MSMS AL20221201_MKP_PDAC_01 4 384.5166625976562 3 384.517106 1150.52949 NaN NaN NaN NaN NaN NaN NaN 8.9367 1 6.4548 5.9548 6.9548 -2.482 0 0 0 0.85737 1 4506 4506 0.26902 0 1 + 18921 19671 13029 13264 22334 22334 -0.039754551446321784 HFVEDKDYV 9 Unmodified _HFVEDKDYV_ 0 0 0 REV__ENSG00000129518|ENST00000250454|EAPP REV__ENSG00000129518|ENST00000250454|EAPP MSMS AL20221201_MKP_PDAC_01 4 384.5167846679688 3 384.517106 1150.52949 NaN NaN NaN NaN NaN NaN NaN 9.206 1 6.7241 6.2241 7.2241 -2.482 0 0 0 0.85737 1 4644 4644 0.26902 0 1 + 18922 19671 13029 13264 22335 22335 -0.039754551446321784 HFVEDKDYV 9 Unmodified _HFVEDKDYV_ 0 0 0 REV__ENSG00000129518|ENST00000250454|EAPP REV__ENSG00000129518|ENST00000250454|EAPP MSMS AL20221201_MKP_PDAC_01 4 384.5162963867188 3 384.517106 1150.52949 NaN NaN NaN NaN NaN NaN NaN 9.4583 1 6.9763 6.4763 7.4763 -2.482 0 0 0 0.85737 1 4773 4773 0.26902 0 1 + 18923 19671 13029 13264 22336 22336 -0.039754551446321784 HFVGIESGG 9 Unmodified _HFVGIESGG_ 0 0 0 REV__ENSG00000160410|ENST00000291842|SHKBP1 REV__ENSG00000160410|ENST00000291842|SHKBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.8737182617188 2 451.721967 901.429381 NaN NaN NaN NaN NaN NaN NaN 22.372 1 22.372 21.872 22.872 0 0 0 0 0.7453 1 11375 11375 7.9102 0 1 + 18924 21543 13030 13265 22337 22337 -0.02527647687747958 HFVGSLGEE 9 Unmodified _HFVGSLGEE_ 0 0 0 REV__ENST00000532257.1_3_2:17935559-17941221:+|nuORF REV__ENST00000532257.1_3_2:17935559-17941221:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7328186035156 2 487.732532 973.45051 NaN NaN NaN NaN NaN NaN NaN 17.851 1 17.865 17.365 18.365 0.013865 0 0 0 0.82739 1 8908 8908 4.3292 0 1 + 18925 28458 13031 13266 22338 22338 -0.037276823789056834 HFWIQDYDYHF 11 Unmodified _HFWIQDYDYHF_ 0 0 0 ENSG00000135220|ENST00000251566|UGT2A3 ENSG00000135220|ENST00000251566|UGT2A3 ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 785.8408813476562 2 785.841133 1569.66771 0.13935 0.00010951 0.11173 8.7801E-05 0.25108 0.00019731 785.8414489098664 49.15 0.28742 48.778 48.635 48.923 -0.37172 53 13 5 0 0 0 0.7326 1 26378 26378 1.1933 0 1 12803000 18926 4678 13032 13267 22339 22339 -0.09433331896138952 HFWYEHTEKLR 11 Unmodified _HFWYEHTEKLR_ 0 0 0 REV__ENSG00000170396|ENST00000302277|ZNF804A REV__ENSG00000170396|ENST00000302277|ZNF804A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 773.8851928710938 2 773.3835 1544.75245 -0.0051066 -3.9494E-06 0.067294 5.2044E-05 0.062188 4.8095E-05 773.3827649228083 92.551 0.14825 92.551 92.463 92.612 0 14 9 2 0 0 0 0.73506 1 51159 51159 0.96228 0.65524 1 336840 + 18927 22478 13033 13268 22340 22340 0.0018603864045871887 HFYAKSLTL 9 Unmodified _HFYAKSLTL_ 0 0 0 ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5350341796875 3 360.53432 1078.58113 1.4888 0.00053675 0.18504 6.6715E-05 1.6738 0.00060346 360.53433147647735 39.077 0.41261 34.626 34.399 34.811 -4.4509 80 26 4 0 0 0 0.32871 1 23186 23186 15.248 0.8431 1 91366000 18928 14432 13034 13269 22341 22341 0.04498333339938654 HFYFPKGN 8 Unmodified _HFYFPKGN_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB;REV__ENST00000438529.1_1_7:63573643-63575167:+|nuORF REV__ENSG00000169919|ENST00000304895|GUSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2483825683594 2 505.248152 1008.48175 NaN NaN NaN NaN NaN NaN NaN 23.829 1 23.841 23.341 24.341 0.012396 0 0 0 0.97444 1 12162 12162 2.3027 0 1 + 18929 22437;27055 13035 13270 22342 22342 -0.022150645541501035 HFYHRLLPLLT 11 Unmodified _HFYHRLLPLLT_ 0 0 0 ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2074279785156 4 353.206762 1408.79794 0.2143 7.5693E-05 0.40053 0.00014147 0.61483 0.00021716 353.2069053971715 54.878 0.51804 54.81 54.462 54.98 -0.068737 39 25 2 0 0 0 0.74429 1 29732 29732 0.094841 0.094841 1 2081900 18930 12637 13036 13271 22343 22343 0.1098930889352232 HFYHRLLPLLT 11 Unmodified _HFYHRLLPLLT_ 0 0 0 ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 4 353.206762 1408.79794 0.8167 0.00028847 1.0987 0.00038807 1.9154 0.00067653 353.20703429842786 54.45 0.29066 54.45 54.33 54.62 0 -0.17997 0.00087371 NaN 0.094841 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 676010 18931 12637 13036 13271 0.1098930889352232 HFYHRLLPLLT 11 Unmodified _HFYHRLLPLLT_ 0 0 0 ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF ENST00000383699.7_1_3:86115904-86116060:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 353.206762 1408.79794 0.2143 7.5693E-05 0.40053 0.00014147 0.61483 0.00021716 353.2069053971715 54.878 0.51804 54.81 54.462 54.98 -0.068737 0.17997 -0.00011268 NaN 0.094841 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2081900 18932 12637 13036 13271 0.1098930889352232 HFYIKKKDF 9 Unmodified _HFYIKKKDF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.341796875 2 613.340041 1224.66553 NaN NaN NaN NaN NaN NaN NaN 58.989 1 58.498 57.998 58.998 -0.49079 0 0 0 0.84564 1 32088 32088 2.0598 0.21551 1 18933 10367 13037 13272 22344 22344 0.062182841566936986 HFYQWLTN 8 Unmodified _HFYQWLTN_ 0 0 0 REV__ENST00000446309.1_1_7:86780824-86781686:-|nuORF REV__ENST00000446309.1_1_7:86780824-86781686:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.5350646972656 3 370.178536 1107.51378 1.3331 0.00049347 -0.5166 -0.00019123 0.81648 0.00030224 370.1783195878741 32.646 0.26963 28.79 28.635 28.904 -3.8562 23 13 3 0 0 0 8.7369 1 18647 18647 4.3292 0 1 8020800 + 18934 27139 13038 13273 22345 22345 -0.03567696871004955 HGAAPRRG 8 Unmodified _HGAAPRRG_ 0 0 0 nc|ENSG00000185252|Q16587-5|ZNF74;ENST00000493734.5_1_22:20749431-20759943:+|nuORF nc|ENSG00000185252|Q16587-5|ZNF74 nc|ENSG00000185252|Q16587-5|ZNF74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2282104492188 2 411.228085 820.441617 -0.79748 -0.00032795 3.2691 0.0013443 2.4716 0.0010164 411.2288436426744 103.13 0.11593 103.09 103.03 103.14 -0.047928 9 4 3 0 0 0 0.80975 1 57288 57288 0.79363 0 1 2205700 18935 14321 13039 13274 22346 22346 0.024214335659394237 HGAEKLFKLSR 11 Unmodified _HGAEKLFKLSR_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2505187988281 3 429.250695 1284.73025 0.90829 0.00038989 -0.46973 -0.00020163 0.43856 0.00018825 429.2504256496987 75.454 1.8608 69.279 68.759 70.62 -6.1757 201 101 3 0 0 0 0.46131 4 49832 49460;49832;49948;50087 11.065 0 1 23716000 + 18936 17313 13040 13275 22347;22348;22349;22350 22348 0.09927858962691971 HGAGILLRQR 10 Unmodified _HGAGILLRQR_ 0 0 0 ENST00000437621.6_1_7:1626575-1627631:+|nuORF ENST00000437621.6_1_7:1626575-1627631:+|nuORF ENST00000437621.6_1_7:1626575-1627631:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.2291259765625 3 374.228113 1119.66251 NaN NaN NaN NaN NaN NaN NaN 52.072 1 51.638 51.138 52.138 -0.43367 0 0 0 0.79473 1 28111 28111 7.1017 2.0542 1 18937 13351 13041 13276 22351 22351 0.10746453822548574 HGAHIYLTM 9 Unmodified _HGAHIYLTM_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MSMS AL20221201_MKP_PDAC_01 4 521.7605590820312 2 521.760569 1041.50659 NaN NaN NaN NaN NaN NaN NaN 44.6 1 39.748 39.248 40.248 -4.852 0 0 0 0.27711 1 27248 27248 26.341 8.2063 1 18938 481 13042 13277 22352 22352 -0.012507527431125709 HGAHIYLTM 9 Unmodified _HGAHIYLTM_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MSMS AL20221201_MKP_PDAC_01 4 521.7620239257812 2 521.760569 1041.50659 NaN NaN NaN NaN NaN NaN NaN 44.785 1 39.933 39.433 40.433 -4.852 0 0 0 0.40995 1 27379 27379 19.439 0 1 18939 481 13042 13277 22353 22353 -0.012507527431125709 HGAIWTEVWE 10 Unmodified _HGAIWTEVWE_ 0 0 0 nc|ENSG00000156453|Q08174|PCDH1;ENST00000511044.1_1_5:141242715-141245657:-|nuORF nc|ENSG00000156453|Q08174|PCDH1 nc|ENSG00000156453|Q08174|PCDH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2936401367188 2 614.293288 1226.57202 0.092257 5.6673E-05 0.77455 0.0004758 0.86681 0.00053248 614.2932239032644 69.455 0.1912 68.976 68.851 69.042 -0.47903 11 7 2 0 0 0 0.51153 1 37971 37971 24.021 15.275 1 864850 18940 16293 13043 13278 22354 22354 -0.032200600164060234 HGAPEKKPE 9 Unmodified _HGAPEKKPE_ 0 0 0 REV__ENSG00000148843|ENST00000369797|PDCD11 REV__ENSG00000148843|ENST00000369797|PDCD11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2355041503906 2 496.761623 991.508694 -0.2637 -0.000131 0.089182 4.4302E-05 -0.17452 -8.6696E-05 496.76131871696253 29.057 0.13894 29.057 28.963 29.102 0 10 6 2 0 0 0 0.21242 1 15013 15013 5.2307 0 1 592060 + 18941 20974 13044 13279 22355 22355 0.012599992663808735 HGAPFAYI 8 Unmodified _HGAPFAYI_ 0 0 0 REV__ENSG00000160539|ENST00000372264|PLPP7 REV__ENSG00000160539|ENST00000372264|PLPP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2241821289062 2 438.224146 874.433738 NaN NaN NaN NaN NaN NaN NaN 18.18 1 18.194 17.694 18.694 0.013865 0 0 0 0.97444 1 9096 9096 0.79363 0 1 + 18942 21549 13045 13280 22356 22356 -0.008501384741975926 HGARCPGF 8 Unmodified _HGARCPGF_ 0 0 0 REV__ENST00000476162.5_1_6:30887870-30890700:+|nuORF REV__ENST00000476162.5_1_6:30887870-30890700:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2276611328125 2 422.697772 843.380991 0.1296 5.4783E-05 -1.2991 -0.00054912 -1.1695 -0.00049434 422.6972782843238 54.838 0.27864 54.371 54.261 54.54 -0.46664 23 13 2 0 0 0 8.7369 1 29816 29816 2.5775 1.7838 1 3773600 + 18943 27590 13046 13281 22357 22357 -0.04696419808647079 HGAVQPGDHCE 11 Unmodified _HGAVQPGDHCE_ 0 0 0 nc|ENSG00000133321|Q9UL19-2|PLAAT4 nc|ENSG00000133321|Q9UL19-2|PLAAT4 nc|ENSG00000133321|Q9UL19-2|PLAAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8304138183594 3 383.829578 1148.46691 0.73778 0.00028318 1.6474 0.00063234 2.3852 0.00091552 383.83016035486565 74.959 0.28194 74.482 74.348 74.63 -0.47713 19 11 2 0 0 0 0.71036 1 41044 41044 1.3296 0 1 1584100 18944 16199 13047 13282 22358 22358 -0.10138924484454037 HGCVTIHRY 9 Carbamidomethyl (C) _HGC(Carbamidomethyl (C))VTIHRY_ HGC(1)VTIHRY HGC(73)VTIHRY 0 1 0 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5228576660156 3 381.522309 1141.5451 0.82524 0.00031485 -0.48826 -0.00018628 0.33697 0.00012856 381.52241457879853 17.256 0.23682 14.669 14.572 14.809 -2.5866 108 37 4 0 0 0 0.012668 1 8980 8980 72.968 43.127 1 16817000 18945 3064 13048 13283 22359 22359 315 -0.020014471085687546 HGDADHYYY 9 Unmodified _HGDADHYYY_ 0 0 0 REV__ENSG00000013375|ENST00000513973|PGM3 REV__ENSG00000013375|ENST00000513973|PGM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8180541992188 3 380.817556 1139.43084 NaN NaN NaN NaN NaN NaN NaN 62.204 1 62.204 61.704 62.704 0 0 0 0 0.84564 1 34690 34690 1.0715 0 1 + 18946 17074 13049 13284 22360 22360 -0.1333005838966983 HGDADHYYY 9 Unmodified _HGDADHYYY_ 0 0 0 REV__ENSG00000013375|ENST00000513973|PGM3 REV__ENSG00000013375|ENST00000513973|PGM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8177490234375 3 380.817556 1139.43084 NaN NaN NaN NaN NaN NaN NaN 62.605 1 62.605 62.105 63.105 0 0 0 0 0.84564 1 34922 34922 1.0715 0 1 + 18947 17074 13049 13284 22361 22361 -0.1333005838966983 HGDCIRITEKM 11 Unmodified _HGDCIRITEKM_ 0 0 0 ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1;ENST00000586365.5_1_18:47812373-47813998:-|nuORF;ENST00000590901.5_1_18:47812373-47813282:-|nuORF ENSG00000154832|ENST00000285106|CXXC1 ENSG00000154832|ENST00000285106|CXXC1 MSMS AL20221201_MKP_PDAC_01 4 434.8823547363281 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 15.03 1 12.503 12.003 13.003 -2.5273 0 0 0 0.94201 1 7679 7679 0.36667 0 1 18948 6352 13050 13285 22362 22362 -0.016720166744335074 HGDHLLSG 8 Unmodified _HGDHLLSG_ 0 0 0 ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2075500488281 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 11.463 1 11.475 10.975 11.975 0.012355 0 0 0 0.97444 1 5656 5656 0.69038 0 1 18949 4468 13051 13286 22363 22363 -0.025408010019873473 HGDNLALDP 9 Unmodified _HGDNLALDP_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-3|CRB2 REV__nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2310180664062 2 476.230156 950.445759 -0.44351 -0.00021121 1.4609 0.00069573 1.0174 0.00048451 476.2308510802279 18.07 0.136 18.084 17.995 18.131 0.013865 38 26 2 0 0 0 0.2143 1 9012 9012 21.747 1.293 1 1264800 + 18950 20933 13052 13287 22364 22364 -0.03144566521689285 HGDNLALDP 9 Unmodified _HGDNLALDP_ 0 0 0 REV__nc|ENSG00000148204|Q5IJ48-3|CRB2 REV__nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 476.230156 950.445759 -0.44351 -0.00021121 1.4609 0.00069573 1.0174 0.00048451 476.2308510802279 18.07 0.136 18.084 17.995 18.131 0.013865 0 0 NaN 21.747 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1264800 + 18951 20933 13052 13287 -0.03144566521689285 HGEGTFCELL 10 Unmodified _HGEGTFCELL_ 0 0 0 REV__ENSG00000168263|ENST00000382082|KCNV2 REV__ENSG00000168263|ENST00000382082|KCNV2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.1720581054688 3 369.170941 1104.491 NaN NaN NaN NaN NaN NaN NaN 29.373 1 29.403 28.903 29.903 0.030106 0 0 0 0.99248 1 15324 15324 0.62683 0 1 + 18952 22297 13053 13288 22365 22365 -0.057070840507776666 HGEPVVVY 8 Unmodified _HGEPVVVY_ 0 0 0 REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335 REV__nc|ENSG00000198026|Q9H4Z2-2|ZNF335 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2350463867188 2 450.23471 898.454868 0.62792 0.00028271 0.21177 9.5346E-05 0.83969 0.00037806 450.234727732518 45.056 0.45185 40.204 39.935 40.387 -4.852 67 29 3 0 0 0 0.5284 1 27591 27591 32.117 1.8922 1 51307000 + 18953 23981 13054 13289 22366 22366 0.001578268346747791 HGEQQCLRY 9 Unmodified _HGEQQCLRY_ 0 0 0 REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8 REV__nc|ENSG00000174989|Q8N3Y1-2|FBXW8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2622680664062 2 567.261465 1132.50838 -0.26717 -0.00015156 0.055671 3.158E-05 -0.2115 -0.00011998 567.261383447205 18.694 0.14034 18.694 18.62 18.76 0 17 14 2 0 0 0 0.54444 1 9317 9317 4.756 1.1595 1 342640 + 18954 22831 13055 13290 22367 22367 -0.05257743725110231 HGERTPYVL 9 Unmodified _HGERTPYVL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.857177734375 3 357.857574 1070.55089 -0.54391 -0.00019464 0.20331 7.2755E-05 -0.3406 -0.00012189 357.85759000303415 26.647 0.33608 26.647 26.488 26.824 0 45 15 4 0 0 0 0.32871 1 13674 13674 10.8 1.2555 1 8560000 18955 6002 13056 13291 22368 22368 0.01843974674761739 HGESAAMMLP 10 Unmodified _HGESAAMMLP_ 0 0 0 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 REV__nc|ENSG00000170921|Q9HCD6-2|TANC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2337646484375 2 522.23607 1042.45759 0.61982 0.00032369 4.4622 0.0023303 5.082 0.002654 522.2382778052647 66.996 0.52755 66.996 66.839 67.366 0 49 23 3 0 0 0 0.66569 1 37463 37463 6.7232 1.4263 1 3753600 + 18956 22521 13057 13292 22369 22369 -0.06194409094337061 HGESISML 8 Unmodified _HGESISML_ 0 0 0 ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000478966.1_1_2:224840586-224849719:-|nuORF ENSG00000135919|ENST00000409304|SERPINE2 ENSG00000135919|ENST00000409304|SERPINE2 MSMS AL20221201_MKP_PDAC_01 4 437.2111511230469 2 437.210378 872.406203 NaN NaN NaN NaN NaN NaN NaN 51.79 1 46.055 45.555 46.555 -5.7345 0 0 0 0.43098 1 32617 32617 49.669 2.748 1 18957 4758 13058 13293 22370 22370 -0.03510409796740532 HGFEAVYEL 9 Unmodified _HGFEAVYEL_ 0 0 0 ENSG00000113658|ENST00000545279|SMAD5 ENSG00000113658|ENST00000545279|SMAD5 ENSG00000113658|ENST00000545279|SMAD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.756103515625 2 532.756007 1063.49746 0.45101 0.00024028 0.19565 0.00010423 0.64666 0.00034451 532.7563480498351 58.212 0.33043 58.212 58.036 58.366 0 23 12 3 0 0 0 0.16226 1 32421 32421 26.884 17.501 1 2390100 18958 2990 13059 13294 22371 22371 -0.031748228277592716 HGFETVYEL 9 Unmodified _HGFETVYEL_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7615966796875 2 547.761289 1093.50803 0.25328 0.00013874 0.25852 0.00014161 0.5118 0.00028034 547.7612591735277 56.694 0.33992 56.694 56.495 56.835 0 25 14 2 0 0 0 0.010877 1 31474 31474 77.984 35.89 1 8998300 18959 7976 13060 13295 22372 22372 -0.03498840173347162 HGFETVYEL 9 Unmodified _HGFETVYEL_ 0 0 0 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 ENSG00000170365|ENST00000302085|SMAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7610473632812 2 547.761289 1093.50803 0.35307 0.0001934 -1.1821 -0.0006475 -0.82902 -0.0004541 547.7606662417297 57.174 0.23654 56.684 56.558 56.795 -0.48974 16 10 2 0 0 0 0.16226 1 31109 31109 26.884 5.137 1 2145600 18960 7976 13060 13295 22373 22373 -0.03498840173347162 HGFFDFETF 9 Unmodified _HGFFDFETF_ 0 0 0 ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A;nc|ENSG00000079335|Q9UNH5-4|CDC14A;nc|ENSG00000079335|Q9UNH5-3|CDC14A;ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENSG00000079335|ENST00000336454|CDC14A;ENST00000469387.1_1_1:100889822-100908582:+|nuORF ENSG00000079335|ENST00000336454|CDC14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.748779296875 2 573.748182 1145.48181 0.63781 0.00036594 0.45588 0.00026156 1.0937 0.0006275 573.7478177026491 86.914 0.24982 86.411 86.267 86.517 -0.50318 21 9 3 0 0 0 0.052168 1 47553 47553 44.407 33.583 1 509240 18961 1273;13833 13061 13296 22374 22374 -0.08511109344817669 HGFGNVHAY 9 Unmodified _HGFGNVHAY_ 0 0 0 nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7 nc|ENSG00000144354|Q9BWT1-3|CDCA7 nc|ENSG00000144354|Q9BWT1-3|CDCA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2324523925781 2 501.233033 1000.45151 -0.12077 -6.0536E-05 -0.039102 -1.9599E-05 -0.15988 -8.0135E-05 501.23303534865585 25.341 0.22546 25.341 25.221 25.447 0 25 10 3 0 0 0 0.013472 1 12969 12969 70.716 58.184 1 4468800 18962 5600 13062 13297 22375 22375 -0.048694232193497555 HGFGNVHAY 9 Unmodified _HGFGNVHAY_ 0 0 0 nc|ENSG00000144354|Q9BWT1-3|CDCA7;nc|ENSG00000144354|Q9BWT1-5|CDCA7;nc|ENSG00000144354|Q9BWT1|CDCA7;nc|ENSG00000144354|Q9BWT1-6|CDCA7;ENSG00000144354|ENST00000306721|CDCA7 nc|ENSG00000144354|Q9BWT1-3|CDCA7 nc|ENSG00000144354|Q9BWT1-3|CDCA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2334899902344 2 501.233033 1000.45151 0.66625 0.00033394 0.25197 0.00012629 0.91821 0.00046024 501.2331500869696 28.226 0.34948 25.078 24.896 25.246 -3.1482 49 18 3 0 0 0 0.0090851 2 15650 15650;15774 85.357 55.132 1 57216000 18963 5600 13062 13297 22376;22377 22376 -0.048694232193497555 HGFKAWVKY 9 Unmodified _HGFKAWVKY_ 0 0 0 REV__ENSG00000185129|ENST00000331327|PURA REV__ENSG00000185129|ENST00000331327|PURA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3064575195312 2 568.306001 1134.59745 0.37601 0.00021369 -0.40279 -0.00022891 -0.026775 -1.5216E-05 568.3050226267547 26.365 0.21642 26.392 26.279 26.495 0.026951 11 9 2 0 0 0 0.54444 1 13679 13679 4.756 0.81161 1 2791700 + 18964 23476 13063 13298 22378 22378 0.03553459296699657 HGFMDMLHDK 10 Unmodified _HGFMDMLHDK_ 0 0 0 ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.1865539550781 3 410.851326 1229.53215 -0.2363 -9.7083E-05 0.81245 0.0003338 0.57616 0.00023671 410.85153583814736 33.078 0.26495 32.918 32.787 33.052 -0.15919 17 10 2 0 0 0 0.67046 1 17234 17234 6.1918 1.1443 1 1992200 18965 10150 13064 13299 22379 22379 -0.0734364628297044 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7191772460938 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 0.56534 1 0.49205 -0.0079471 0.99205 -0.073289 0 0 0 0.97444 1 282 282 0 0 1 + 18966 18113 13065 13300 22380 22380 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7191772460938 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 1.2361 1 1.1628 0.66279 1.6628 -0.07329 0 0 0 0.97444 1 619 619 0 0 1 + 18967 18113 13065 13300 22381 22381 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7195434570312 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 3.48 1 3.408 2.908 3.908 -0.072029 0 0 0 0.97444 1 1715 1715 0 0 1 + 18968 18113 13065 13300 22382 22382 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7191772460938 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 3.8171 1 3.7451 3.2451 4.2451 -0.072029 0 0 0 0.97444 1 1883 1883 0 0 1 + 18969 18113 13065 13300 22383 22383 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7191162109375 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 4.841 1 4.7682 4.2682 5.2682 -0.072869 0 0 0 0.97444 1 2393 2393 0 0 1 + 18970 18113 13065 13300 22384 22384 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.719482421875 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 13.08 1 13.031 12.531 13.531 -0.048298 0 0 0 0.97444 1 6349 6349 0 0 1 + 18971 18113 13065 13300 22385 22385 -0.07031326479568634 HGFNYGFF 8 Unmodified _HGFNYGFF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7188720703125 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 13.607 1 13.559 13.059 14.059 -0.048298 0 0 0 0.97444 1 6599 6599 0 0 1 + 18972 18113 13065 13300 22386 22386 -0.07031326479568634 HGFREGTTP 9 Unmodified _HGFREGTTP_ 0 0 0 ENST00000504562.1_1_5:40832608-40835123:-|nuORF;ENSG00000145592|ENST00000274242|RPL37 ENST00000504562.1_1_5:40832608-40835123:-|nuORF ENST00000504562.1_1_5:40832608-40835123:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2440795898438 2 501.243598 1000.47264 0.63947 0.00032053 1.2642 0.00063366 1.9036 0.00095419 501.24431904688197 17.764 0.15159 15.177 15.115 15.266 -2.5866 29 17 2 0 0 0 0.15471 1 9311 9311 27.629 9.4825 1 2319300 18973 5707 13066 13301 22387 22387 -0.027574579104793884 HGGIHTMI 8 Unmodified _HGGIHTMI_ 0 0 0 chr4:68668188-68668515|37|35.24|0.95|5.21|-|1|TE_info:THE1D,THE1D_dup3128,ERVL-MaLR,LTR,donor,+,68668515,68668867|UGT2B15,None|5 chr4:68668188-68668515|37|35.24|0.95|5.21|-|1|TE_info:THE1D,THE1D_dup3128,ERVL-MaLR,LTR,donor,+,68668515,68668867|UGT2B15,None|5 chr4:68668188-68668515|37|35.24|0.95|5.21|-|1|TE_info:THE1D,THE1D_dup3128,ERVL-MaLR,LTR,donor,+,68668515,68668867|UGT2B15,None|5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2207336425781 2 433.22108 864.427607 1.1478 0.00049723 -2.2538 -0.00097641 -1.1061 -0.00047918 433.22066823713925 88.811 0.76219 82.636 82.26 83.022 -6.1757 69 42 3 0 0 0 0.77907 1 58456 58456 10.183 0 1 12527000 18974 114 13067 13302 22388 22388 -0.010029799773747072 HGGRRSPALQH 11 Unmodified _HGGRRSPALQH_ 0 0 0 REV__ENST00000255784.5_1_22:42221829-42221970:+|nuORF REV__ENST00000255784.5_1_22:42221829-42221970:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 405.5193786621094 3 405.886638 1214.63809 1.1299 0.00045862 2.1854 0.00088701 3.3153 0.0013456 405.8874584578349 36.917 0.25991 32.634 32.49 32.75 -4.2835 26 15 2 0 0 0 0.29564 1 21562 21562 2.6312 0.88896 1 7683700 + 18975 24917 13068 13303 22389 22389 0.03935193669030923 HGGSPGRETS 10 Unmodified _HGGSPGRETS_ 0 0 0 ENST00000464942.6_1_12:122710146-122710245:-|nuORF ENST00000464942.6_1_12:122710146-122710245:-|nuORF ENST00000464942.6_1_12:122710146-122710245:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7272338867188 2 492.728312 983.442071 NaN NaN NaN NaN NaN NaN NaN 15.849 1 15.835 15.335 16.335 -0.014067 0 0 0 0.99248 1 7797 7797 1.4819 0.68827 1 18976 13725 13069 13304 22390 22390 -0.050312362955310164 HGHLSAVY 8 Unmodified _HGHLSAVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2240905761719 2 442.224677 882.434801 -0.16648 -7.3623E-05 -0.40861 -0.0001807 -0.57509 -0.00025432 442.2247062576898 21.445 0.22299 21.445 21.332 21.555 0 61 30 3 0 0 0 0.41521 1 10814 10814 42.968 25.881 1 1370200 18977 8116 13070 13305 22391 22391 -0.011119241052938378 HGHLSAVY 8 Unmodified _HGHLSAVY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2269592285156 2 442.224677 882.434801 0.38094 0.00016846 0.25652 0.00011344 0.63746 0.0002819 442.2248751711477 24.193 0.35611 21.366 21.178 21.534 -2.8273 42 19 3 0 0 0 0.24182 1 13067 13067 63.394 39.184 1 18162000 18978 8116 13070 13305 22392 22392 -0.011119241052938378 HGIDPTGTY 9 Unmodified _HGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7252807617188 2 480.724707 959.43486 -0.23492 -0.00011293 0.51834 0.00024918 0.28342 0.00013625 480.7242128945809 29.567 0.3317 29.567 29.391 29.722 0 42 20 3 0 0 0 0.010877 2 15267 15267;15370 77.984 33.577 1 10959000 18979 9643;9783;14685 13071 13306 22393;22394 22393 -0.046479688959493615 HGIDPTGTY 9 Unmodified _HGIDPTGTY_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7253112792969 2 480.724707 959.43486 1.232 0.00059225 0.1076 5.1726E-05 1.3396 0.00064397 480.7246940070258 34.166 0.4498 30.181 29.929 30.379 -3.9853 53 24 3 0 0 0 0.0086179 2 19720 19593;19720 89.427 45.02 1 34111000 18980 9643;9783;14685 13071 13306 22395;22396 22396 -0.046479688959493615 HGKFSHNI 8 Unmodified _HGKFSHNI_ 0 0 0 REV__ENST00000510413.5_2_4:151774087-151788865:-|nuORF REV__ENST00000510413.5_2_4:151774087-151788865:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.6842346191406 2 470.243401 938.472249 0.30161 0.00014183 -1.1049 -0.00051959 -0.80333 -0.00037776 470.2431613323722 46.996 0.29095 46.996 46.858 47.149 0 24 13 2 0 0 0 8.7369 1 25647 25647 5.7604 0 1 6085100 + 18981 28144 13072 13307 22397 22397 0.0005516716032616387 HGKGKKSS 8 Unmodified _HGKGKKSS_ 0 0 0 nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1 nc|ENSG00000157510|Q8TED9-2|AFAP1L1 nc|ENSG00000157510|Q8TED9-2|AFAP1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.739013671875 2 414.737951 827.46135 NaN NaN NaN NaN NaN NaN NaN 20.893 1 20.904 20.404 21.404 0.010553 0 0 0 0.97444 1 10672 10672 5.2307 2.6532 1 18982 6525 13073 13308 22398 22398 0.04071764786044696 HGKKLNFSESH 11 Unmodified _HGKKLNFSESH_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3272094726562 2 642.328193 1282.64183 0.68072 0.00043724 -4.4275 -0.0028439 -3.7468 -0.0024066 642.326068040639 18.949 0.10452 16.327 16.277 16.381 -2.6215 9 6 2 0 0 0 0.65846 1 10016 10016 8.1555 2.4237 1 1622800 18983 4835 13074 13309 22399 22399 0.01181818652230504 HGKQGMLSIF 10 Unmodified _HGKQGMLSIF_ 0 0 0 REV__ENSG00000108479|ENST00000588479|GALK1 REV__ENSG00000108479|ENST00000588479|GALK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2972412109375 2 559.294776 1116.575 NaN NaN NaN NaN NaN NaN NaN 75.437 1 75.437 74.937 75.937 0 0 0 0 0.97302 1 41962 41962 3.5965 0.31518 1 + 18984 18609 13075 13310 22400 22400 0.021374918367882856 HGKSAAAVF 9 Unmodified _HGKSAAAVF_ 0 0 0 ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENST00000573554.1_1_16:18800267-18800435:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7146301269531 2 444.240327 886.466101 -0.48772 -0.00021666 -0.22861 -0.00010156 -0.71633 -0.00031822 444.2401893416814 35.742 0.29546 35.519 35.393 35.688 -0.2224 14 12 2 0 0 0 0.18882 1 18729 18729 6.7232 0 1 1509800 18985 15501 13076 13311 22401 22401 0.018326489287915138 HGLASHCVTGY 11 Unmodified _HGLASHCVTGY_ 0 0 0 REV__ENSG00000181085|ENST00000338033|MAPK15 REV__ENSG00000181085|ENST00000338033|MAPK15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7643432617188 2 572.76384 1143.51313 1.1385 0.00065209 2.323 0.0013305 3.4615 0.0019826 573.2670224841008 50.903 0.27678 45.254 45.039 45.316 -5.649 25 16 2 0 0 0 0.46578 1 31925 31925 18.146 1.2041 1 54745000 + 18986 23188 13077 13312 22402 22402 -0.05288859582378791 HGLECVVAM 9 Carbamidomethyl (C),Oxidation (M) _HGLEC(Carbamidomethyl (C))VVAM(Oxidation (M))_ HGLEC(1)VVAM HGLECVVAM(1) HGLEC(42)VVAM HGLECVVAM(42) 0 1 1 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2357177734375 2 516.23607 1030.45759 -0.36651 -0.00018921 0.71686 0.00037007 0.35034 0.00018086 516.2363603695758 31.921 0.32434 31.921 31.739 32.063 0 25 15 2 0 0 0 0.06187 1 16632 16632 42.095 23.948 1 3378000 18987 1863 13078 13313 22403 22403 180 309 -0.05642409094343748 HGLECVVAM 9 Carbamidomethyl (C),Oxidation (M) _HGLEC(Carbamidomethyl (C))VVAM(Oxidation (M))_ HGLEC(1)VVAM HGLECVVAM(1) HGLEC(51)VVAM HGLECVVAM(51) 0 1 1 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2371215820312 2 516.23607 1030.45759 0.83218 0.0004296 1.0908 0.00056313 1.923 0.00099273 516.2367318372852 36.804 0.36368 32.52 32.337 32.701 -4.2835 32 21 2 0 0 0 0.038285 1 21535 21535 50.855 21.773 1 9648500 18988 1863 13078 13313 22404 22404 180 309 -0.05642409094343748 HGLELLTVY 9 Unmodified _HGLELLTVY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7894897460938 2 522.78985 1043.56515 NaN NaN NaN NaN NaN NaN NaN 69.932 1 69.932 69.432 70.432 0 0 0 0 0.096036 1 38960 38960 44.407 28.56 1 18989 2781 13079 13314 22405 22405 0.04510627103036313 HGLELLTVY 9 Unmodified _HGLELLTVY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7894897460938 2 522.78985 1043.56515 0.095858 5.0114E-05 -0.29782 -0.0001557 -0.20197 -0.00010559 522.7896395090778 70.411 0.39885 69.932 69.693 70.092 -0.47903 70 29 4 0 0 0 0.0094915 2 38530 38429;38530 81.864 51.639 1 22462000 18990 2781 13079 13314 22406;22407 22407 0.04510627103036313 HGLELLTVY 9 Unmodified _HGLELLTVY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7894897460938 2 522.78985 1043.56515 1.0297 0.00053834 0.0030583 1.5989E-06 1.0328 0.00053994 522.7897172400227 90.12 1.6742 83.945 83.165 84.839 -6.1757 175 96 4 0 0 0 0.0094915 4 59551 59281;59411;59551;59681 81.864 40.491 1 30620000 18991 2781 13079 13314 22408;22409;22410;22411 22410 0.04510627103036313 HGLISHRY 8 Unmodified _HGLISHRY_ 0 0 0 REV__ENST00000358337.9_1_5:140050841-140051006:+|nuORF REV__ENST00000358337.9_1_5:140050841-140051006:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2723693847656 2 491.764501 981.514448 1.2575 0.00061837 1.3229 0.00065057 2.5804 0.0012689 491.76475318264187 64.537 0.89158 58.362 57.976 58.868 -6.1757 85 48 3 0 0 0 8.7369 1 42116 42116 6.3541 0 1 25352000 + 18992 25872 13080 13315 22412 22412 0.022951425686983384 HGLLTTVAY 9 Unmodified _HGLLTTVAY_ 0 0 0 ENSG00000229894|ENST00000505354|GK3;nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000198814|ENST00000427190|GK;ENSG00000196475|ENST00000358842|GK2 ENSG00000229894|ENST00000505354|GK3 ENSG00000229894|ENST00000505354|GK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7692260742188 2 487.768917 973.523281 0.97763 0.00047686 -0.093194 -4.5457E-05 0.88444 0.0004314 487.76890094718726 50.122 0.34322 49.73 49.568 49.911 -0.3923 48 16 4 0 0 0 0.012158 2 26938 26938;27047 74.396 36.245 1 21124000 18993 10609 13081 13316 22413;22414 22413 0.03546071414518792 HGLTAARCW 9 Unmodified _HGLTAARCW_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2745361328125 2 507.750536 1013.48652 0.30552 0.00015513 -0.19704 -0.00010005 0.10849 5.5084E-05 507.750342135355 64.17 0.22601 63.685 63.553 63.779 -0.48512 19 10 2 0 0 0 0.17275 1 34946 34946 21.747 9.2151 1 632720 + 18994 17022 13082 13317 22415 22415 -0.019685036830423996 HGLVEVASY 9 Unmodified _HGLVEVASY_ 0 0 0 ENST00000592937.1_1_19:2477233-2477596:+|nuORF;ENSG00000099860|ENST00000215631|GADD45B ENST00000592937.1_1_19:2477233-2477596:+|nuORF ENST00000592937.1_1_19:2477233-2477596:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7513122558594 2 487.750724 973.486896 -0.02932 -1.4301E-05 -0.03485 -1.6998E-05 -0.06417 -3.1299E-05 487.7507274425347 41.964 0.32015 41.964 41.785 42.105 0 39 16 3 0 0 0 0.0094915 2 22622 22622;22734 81.864 24.393 1 46838000 18995 1715 13083 13318 22416;22417 22416 -0.0009080548219344564 HGLVEVASY 9 Unmodified _HGLVEVASY_ 0 0 0 ENST00000592937.1_1_19:2477233-2477596:+|nuORF;ENSG00000099860|ENST00000215631|GADD45B ENST00000592937.1_1_19:2477233-2477596:+|nuORF ENST00000592937.1_1_19:2477233-2477596:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7510070800781 2 487.750724 973.486896 0.83176 0.00040569 0.23093 0.00011264 1.0627 0.00051833 487.7508305080432 47.991 0.65952 42.757 42.482 43.142 -5.2339 92 39 3 0 0 0 0.0094915 2 29884 29751;29884 81.864 31.009 1 60181000 18996 1715 13083 13318 22418;22419 22419 -0.0009080548219344564 HGLYMLFL 8 Unmodified _HGLYMLFL_ 0 0 0 ENST00000520674.5_1_5:141017792-141019494:+|nuORF;ENSG00000164620|ENST00000297164|RELL2 ENST00000520674.5_1_5:141017792-141019494:+|nuORF ENST00000520674.5_1_5:141017792-141019494:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2660827636719 2 497.264956 992.515359 0.58895 0.00029287 2.5101 0.0012482 3.099 0.001541 497.26668856443774 72.404 0.28999 71.927 71.73 72.02 -0.47609 20 13 2 0 0 0 0.76859 1 39609 39609 11.114 0.93107 1 1228100 18997 7216 13084 13319 22420 22420 0.018802208933834663 HGPQLIKLFL 10 Unmodified _HGPQLIKLFL_ 0 0 0 REV__nc|ENSG00000165078|Q8N4T0-3|CPA6 REV__nc|ENSG00000165078|Q8N4T0-3|CPA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.9108581542969 3 389.241248 1164.70191 0.57995 0.00022574 1.1972 0.000466 1.7771 0.00069174 389.2416879647719 93.428 0.20287 87.253 87.1 87.303 -6.1757 33 15 3 0 0 0 0.56675 1 61786 61786 12.873 3.3286 1 38147000 + 18998 21976 13085 13320 22421 22421 0.12615161053417978 HGPTEEQSRK 10 Unmodified _HGPTEEQSRK_ 0 0 0 REV__ENSG00000128564|ENST00000249330|VGF REV__ENSG00000128564|ENST00000249330|VGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7893676757812 2 584.788901 1167.56325 NaN NaN NaN NaN NaN NaN NaN 42.256 1 42.247 41.747 42.747 -0.0088196 0 0 0 0.8671 1 22620 22620 9.3831 0.78985 1 + 18999 19615 13086 13321 22422 22422 -0.013830336528599219 HGQIAEAF 8 Unmodified _HGQIAEAF_ 0 0 0 REV__ENST00000592347.5_2_19:28957524-28957629:-|nuORF REV__ENST00000592347.5_2_19:28957524-28957629:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7168273925781 2 436.716685 871.418816 0.59863 0.00026143 0.45685 0.00019951 1.0555 0.00046095 436.71685893324224 38.7 0.34303 38.7 38.515 38.858 0 40 15 3 0 0 0 0.63229 2 20633 20633;20740 23.148 2.6948 1 11160000 + 19000 29174 13087 13322 22423;22424 22423 -0.02203630342194174 HGRCMAWTEQQ 11 Unmodified _HGRCMAWTEQQ_ 0 0 0 ENSG00000185002|ENST00000332958|RFX6 ENSG00000185002|ENST00000332958|RFX6 ENSG00000185002|ENST00000332958|RFX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2505187988281 3 449.529134 1345.56557 -0.41878 -0.00018825 1.0522 0.00047298 0.63338 0.00028472 449.5298142276244 30.135 0.20658 30.135 30.078 30.285 0 10 9 2 0 0 0 0.72952 1 15661 15661 0.50596 0 1 1593500 19001 9315 13088 13323 22425 22425 -0.09338644511080929 HGRRRKIKR 9 Unmodified _HGRRRKIKR_ 0 0 0 nc|ENSG00000118518|Q9NTX7-2|RNF146;ENSG00000118518|ENST00000368314|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8911743164062 2 603.891964 1205.76937 1.0588 0.00063941 -0.083408 -5.0369E-05 0.97541 0.00058904 604.3929008614095 103.23 0.088394 97.052 97.016 97.105 -6.1757 48 26 2 0 0 0 0.62242 1 69224 69224 0 0 1 5220100 19002 3378 13089 13324 22426 22426 0.17472048827562503 HGSHGCAF 8 Unmodified _HGSHGCAF_ 0 0 0 REV__ENSG00000187969|ENST00000339534|ZCCHC13 REV__ENSG00000187969|ENST00000339534|ZCCHC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.1670837402344 2 408.166305 814.318056 0.65917 0.00026905 0.7109 0.00029017 1.3701 0.00055921 408.16655836388816 54.331 0.39574 54.331 54.132 54.528 0 40 17 3 0 0 0 0.80975 1 30237 30237 0.79363 0 1 7319200 + 19003 23678 13090 13325 22427 22427 -0.09652985596699182 HGTEIDMK 8 Unmodified _HGTEIDMK_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7198486328125 2 465.72111 929.427666 NaN NaN NaN NaN NaN NaN NaN 85.147 1 85.147 84.647 85.647 0 0 0 0 0.95973 1 47193 47193 8.5933 0.68312 1 19004 842 13091 13326 22428 22428 -0.039870247680369175 HGTNTDKKVQV 11 Unmodified _HGTNTDKKVQV_ 0 0 0 REV__ENST00000448913.1_1_13:60849267-60849495:+|nuORF REV__ENST00000448913.1_1_13:60849267-60849495:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5560607910156 3 409.554443 1225.6415 0.56118 0.00022983 0.62998 0.00025801 1.1912 0.00048784 409.55535040688943 17.444 0.16861 14.858 14.736 14.904 -2.5866 48 30 2 0 0 0 0.67892 1 9093 9093 6.2344 0.93747 1 6983600 + 19005 27181 13092 13327 22429 22429 0.03770398932351782 HGTPFAESR 9 Unmodified _HGTPFAESR_ 0 0 0 REV__ENSG00000177992|ENST00000325643|SPATA31E1 REV__ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2454528808594 2 501.243598 1000.47264 -0.27617 -0.00013843 0.78381 0.00039288 0.50764 0.00025445 501.2441218270977 16.679 0.17446 16.679 16.55 16.724 0 59 44 2 0 0 0 0.46501 1 8111 8111 9.3831 2.66 1 1040500 + 19006 23014 13093 13328 22430 22430 -0.027574579104793884 HGTPFAESR 9 Unmodified _HGTPFAESR_ 0 0 0 REV__ENSG00000177992|ENST00000325643|SPATA31E1 REV__ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 501.243598 1000.47264 -0.27617 -0.00013843 0.78381 0.00039288 0.50764 0.00025445 501.2441218270977 16.679 0.17446 16.679 16.55 16.724 0 0 0 NaN 9.3831 59 44 2 NaN NaN NaN NaN 0 NaN NaN 0 1040500 + 19007 23014 13093 13328 -0.027574579104793884 HGTSFFDLL 9 Unmodified _HGTSFFDLL_ 0 0 0 ENST00000262428.4_1_16:84600198-84600339:-|nuORF ENST00000262428.4_1_16:84600198-84600339:-|nuORF ENST00000262428.4_1_16:84600198-84600339:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7586059570312 2 518.758549 1035.50255 0.18802 9.7536E-05 0.1275 6.6143E-05 0.31552 0.00016368 518.7586816536643 65.22 0.28249 64.736 64.616 64.898 -0.48428 20 12 2 0 0 0 0.14602 1 35595 35595 28.487 5.3384 1 3561300 19008 11265 13094 13329 22431 22431 -0.013785189651343899 HGTSFFDLL 9 Unmodified _HGTSFFDLL_ 0 0 0 ENST00000262428.4_1_16:84600198-84600339:-|nuORF ENST00000262428.4_1_16:84600198-84600339:-|nuORF ENST00000262428.4_1_16:84600198-84600339:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.758549 1035.50255 0.18802 9.7536E-05 0.1275 6.6143E-05 0.31552 0.00016368 518.7586816536643 65.22 0.28249 64.736 64.616 64.898 -0.48428 -0.072943 0.00020937 NaN 28.487 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3561300 19009 11265 13094 13329 -0.013785189651343899 HGTVVALRY 9 Unmodified _HGTVVALRY_ 0 0 0 nc|ENSG00000110013|Q9HAT2-2|SIAE;ENSG00000110013|ENST00000263593|SIAE nc|ENSG00000110013|Q9HAT2-2|SIAE nc|ENSG00000110013|Q9HAT2-2|SIAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2879333496094 2 508.287808 1014.56106 -0.59419 -0.00030202 0.65585 0.00033336 0.061666 3.1344E-05 508.28826743303546 34.765 0.15711 34.574 34.497 34.654 -0.19131 11 6 2 0 0 0 0.08691 1 18190 18190 36.127 12.979 1 2325000 19010 2690 13095 13330 22432 22432 0.054365823999773966 HGVATEVVY 9 Unmodified _HGVATEVVY_ 0 0 0 ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF ENSG00000125812|ENST00000338121|GZF1 ENSG00000125812|ENST00000338121|GZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7520751953125 2 487.750724 973.486896 -0.5022 -0.00024495 -0.38424 -0.00018741 -0.88645 -0.00043237 487.7510327796385 34.152 0.20232 34.152 34.044 34.247 0 15 10 2 0 0 0 0.019979 1 17940 17940 63.563 40.414 1 6525600 19011 3884 13096 13331 22433 22433 -0.0009080548218207696 HGVATEVVY 9 Unmodified _HGVATEVVY_ 0 0 0 ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF ENSG00000125812|ENST00000338121|GZF1 ENSG00000125812|ENST00000338121|GZF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7519226074219 2 487.750724 973.486896 0.65354 0.00031877 1.4659 0.00071498 2.1194 0.0010337 487.75086516177413 38.907 0.34285 34.456 34.316 34.659 -4.4509 46 21 4 0 0 0 0.012158 1 22999 22999 74.396 44.171 1 15078000 19012 3884 13096 13331 22434 22434 -0.0009080548218207696 HGVFVNIQY 9 Unmodified _HGVFVNIQY_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7801513671875 2 538.779816 1075.54508 0.41613 0.0002242 2.2694 0.0012227 2.6856 0.0014469 538.7808371290358 56.709 0.32252 56.641 56.497 56.82 -0.068741 39 15 4 0 0 0 0.010877 1 30834 30834 77.984 39.833 1 12789000 19013 6526 13097 13332 22435 22435 0.010328761630944427 HGVFVNIQY 9 Unmodified _HGVFVNIQY_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7803344726562 2 538.779816 1075.54508 0.91383 0.00049235 -3.7096 -0.0019987 -2.7958 -0.0015063 538.7803781208264 62.984 0.63052 56.809 56.526 57.156 -6.1757 69 33 3 0 0 0 0.045537 2 40684 40684;40839 46.921 29.979 1 39690000 19014 6526 13097 13332 22436;22437 22436 0.010328761630944427 HGVKICDVY 9 Carbamidomethyl (C) _HGVKIC(Carbamidomethyl (C))DVY_ HGVKIC(1)DVY HGVKIC(54)DVY 0 1 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7705688476562 2 545.771134 1089.52771 0.64782 0.00035356 -0.61823 -0.00033741 0.029598 1.6154E-05 545.7707940031836 35.266 0.46401 31.171 30.869 31.333 -4.0951 46 27 2 0 0 0 0.032796 1 20478 20478 53.833 25.346 1 20468000 19015 1611 13098 13333 22438 22438 153 -0.01346787434226826 HGVNSFLVY 9 Unmodified _HGVNSFLVY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2677001953125 2 518.266542 1034.51853 0.20602 0.00010677 0.49038 0.00025415 0.6964 0.00036092 518.2667623141584 58.857 0.45066 58.366 58.153 58.604 -0.49079 53 21 4 0 0 0 0.015445 2 32083 31980;32083 68.081 37.856 1 18122000 19016 1625 13099 13334 22439;22440 22440 0.002651872717478909 HGVNSFLVY 9 Unmodified _HGVNSFLVY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.267333984375 2 518.266542 1034.51853 0.67238 0.00034847 -0.29121 -0.00015093 0.38116 0.00019754 518.2664968515788 58.503 0.29222 58.442 58.254 58.546 -0.060719 26 14 2 0 0 0 0.024882 1 31844 31844 58.679 30.192 1 12010000 19017 1625 13099 13334 22441 22441 0.002651872717478909 HGVNSFLVY 9 Unmodified _HGVNSFLVY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2666015625 2 518.266542 1034.51853 1.4615 0.00075742 0.38555 0.00019982 1.847 0.00095724 518.2657155594196 64.345 0.6891 58.169 57.955 58.644 -6.1757 124 37 5 0 0 0 0.024882 2 41714 41582;41714 58.679 35.53 1 79619000 19018 1625 13099 13334 22442;22443 22443 0.002651872717478909 HGVQQQYAYK 10 Unmodified _HGVQQQYAYK_ 0 0 0 nc|ENSG00000125850|Q9BRP0-2|OVOL2;ENSG00000125850|ENST00000278780|OVOL2;ENST00000483661.5_1_20:18005282-18039681:-|nuORF nc|ENSG00000125850|Q9BRP0-2|OVOL2 nc|ENSG00000125850|Q9BRP0-2|OVOL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 408.2215270996094 3 407.871883 1220.59382 1.2447 0.00050767 -2.9269 -0.0011938 -1.6822 -0.00068613 408.20426725194903 20.039 0.23203 17.383 17.239 17.471 -2.6564 16 12 2 0 0 0 0.23895 1 10593 10593 4.1895 1.7547 1 1827200 19019 3898 13100 13335 22444 22444 -0.007652552678337088 HGVSRALF 8 Unmodified _HGVSRALF_ 0 0 0 REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7479858398438 2 443.748319 885.482085 -0.020171 -8.9506E-06 0.062475 2.7723E-05 0.042305 1.8773E-05 443.74831387434443 38.039 0.30728 37.768 37.638 37.946 -0.27133 22 14 2 0 0 0 0.6895 1 20001 20001 18.135 0 1 2620700 + 19020 27529 13101 13336 22445 22445 0.034763551657079006 HGVVPLATY 9 Unmodified _HGVVPLATY_ 0 0 0 ENSG00000122026|ENST00000311549|RPL21;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF ENSG00000122026|ENST00000311549|RPL21 ENSG00000122026|ENST00000311549|RPL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7640075683594 2 478.763635 955.512717 0.55191 0.00026424 -1.067 -0.00051084 -0.51508 -0.0002466 478.7629574410013 47.933 0.22264 47.933 47.81 48.032 0 17 10 2 0 0 0 0.058206 1 26265 26265 42.968 16.627 1 3451100 19021 3618 13102 13337 22446 22446 0.03318088760079263 HGVVPLATY 9 Unmodified _HGVVPLATY_ 0 0 0 ENSG00000122026|ENST00000311549|RPL21;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF ENSG00000122026|ENST00000311549|RPL21 ENSG00000122026|ENST00000311549|RPL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7637939453125 2 478.763635 955.512717 0.62369 0.0002986 -0.67194 -0.0003217 -0.048253 -2.3102E-05 478.76333455247243 48.173 0.21469 47.82 47.69 47.905 -0.3526 18 10 2 0 0 0 0.023761 1 25829 25829 59.795 21.644 1 5640500 19022 3618 13102 13337 22447 22447 0.03318088760079263 HGVVPLATY 9 Unmodified _HGVVPLATY_ 0 0 0 ENSG00000122026|ENST00000311549|RPL21;ENST00000422509.1_1_9:37490797-37490851:-|nuORF;ENST00000473558.5_1_13:27827913-27828439:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF ENSG00000122026|ENST00000311549|RPL21 ENSG00000122026|ENST00000311549|RPL21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.764404296875 2 478.763635 955.512717 1.314 0.00062909 -1.3286 -0.00063608 -0.014599 -6.9895E-06 478.76343328479766 54.035 0.35469 48.17 47.947 48.302 -5.8653 40 20 3 0 0 0 0.023761 1 34115 34115 59.795 21.644 1 31617000 19023 3618 13102 13337 22448 22448 0.03318088760079263 HGVYKITLH 9 Unmodified _HGVYKITLH_ 0 0 0 REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF REV__ENST00000585852.5_1_17:43309778-43311670:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3057861328125 2 534.303458 1066.59236 NaN NaN NaN NaN NaN NaN NaN 40.855 1 40.853 40.353 41.353 -0.0017929 0 0 0 0.50124 1 21803 21803 15.847 0 1 + 19024 29105 13103 13338 22449 22449 0.061731554340894945 HGYEEKRIE 9 Unmodified _HGYEEKRIE_ 0 0 0 REV__ENSG00000134389|ENST00000256785|CFHR5 REV__ENSG00000134389|ENST00000256785|CFHR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2326965332031 3 387.528005 1159.56219 0.60378 0.00023398 0.33439 0.00012959 0.93817 0.00036357 387.52780506801685 24.659 0.29 21.776 21.598 21.888 -2.8831 29 15 3 0 0 0 0.20428 1 13347 13347 21.59 0.71901 1 3405700 + 19025 19983 13104 13339 22450 22450 -0.01121248021786414 HGYPDASY 8 Unmodified _HGYPDASY_ 0 0 0 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 ENSG00000135144|ENST00000548759|DTX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.1915893554688 2 455.1905 908.366446 NaN NaN NaN NaN NaN NaN NaN 94.376 1 94.376 93.876 94.876 0 0 0 0 0.97444 1 52168 52168 0.69038 0 1 19026 4675 13105 13340 22451 22451 -0.09140213475814107 HHCALQSQTRF 11 Unmodified _HHCALQSQTRF_ 0 0 0 REV__ENSG00000213793|ENST00000638862|ZNF888 REV__ENSG00000213793|ENST00000638862|ZNF888 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.3206787109375 2 664.319845 1326.62514 NaN NaN NaN NaN NaN NaN NaN 79.429 1 79.429 78.929 79.929 0 0 0 0 0.94144 1 44121 44121 1.4819 0.15237 1 + 19027 24294 13106 13341 22452 22452 -0.025110055054028635 HHCGTEVLFIF 11 Unmodified _HHCGTEVLFIF_ 0 0 0 REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822021484375 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 19.213 1 19.213 18.713 19.713 0 0 0 0 0.94307 1 9596 9596 0.08335 0 1 + 19028 16718 13107 13342 22453 22453 -0.01606853963062349 HHCGTEVLFIF 11 Unmodified _HHCGTEVLFIF_ 0 0 0 REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense REV__AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|16|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827514648438 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 85.237 1 85.237 84.737 85.737 0 0 0 0 0.94301 1 47242 47242 0.094841 0.011491 1 + 19029 16718 13107 13342 22454 22454 -0.01606853963062349 HHDFLSDLF 9 Unmodified _HHDFLSDLF_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5137329101562 3 377.513696 1129.51926 1.0944 0.00041314 -1.0398 -0.00039252 0.054612 2.0617E-05 377.5133679193314 44.341 0.37257 39.489 39.343 39.715 -4.852 65 27 3 0 0 0 0.2143 1 27122 27122 15.248 3.7538 1 37179000 19030 8193 13108 13343 22455 22455 -0.04032018079192312 HHDPCPGG 8 Unmodified _HHDPCPGG_ 0 0 0 ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 819.3228149414062 1 819.320248 818.312971 1.7751 0.0014544 1.6536 0.0013548 3.4287 0.0028092 819.3215032218673 103.64 0.030411 97.469 97.45 97.481 -6.1757 9 5 2 0 0 0 0.80975 1 69483 69483 0.79363 0 1 2830500 19031 12619 13109 13344 22456 22456 -0.103452894593147 HHDWGPYF 8 Unmodified _HHDWGPYF_ 0 0 0 REV__ENST00000427274.6_1_17:28822526-28847071:+|nuORF REV__ENST00000427274.6_1_17:28822526-28847071:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7283325195312 2 529.727584 1057.44061 0.37612 0.00019924 0.2094 0.00011092 0.58552 0.00031017 529.7277080357367 77.478 0.37772 77.478 77.29 77.668 0 70 30 3 0 0 0 0.57045 2 43025 43025;43141 20.871 7.3633 1 7810300 + 19032 26920 13110 13345 22457;22458 22457 -0.08580825593617192 HHEDSPRFK 9 Unmodified _HHEDSPRFK_ 0 0 0 REV__ENSG00000107902|ENST00000368842|LHPP REV__ENSG00000107902|ENST00000368842|LHPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7833862304688 2 576.780879 1151.5472 0.3706 0.00021375 4.2587 0.0024563 4.6293 0.0026701 576.7838888070753 28.36 0.15907 28.389 28.308 28.467 0.029564 10 6 2 0 0 0 0.19127 1 14774 14774 24.021 5.8742 1 2127800 + 19033 18585 13111 13346 22459 22459 -0.022506950991100894 HHESVGVF 8 Unmodified _HHESVGVF_ 0 0 0 REV__ENST00000369603.9_1_10:112052903-112052975:-|nuORF REV__ENST00000369603.9_1_10:112052903-112052975:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2225036621094 2 456.222134 910.429715 0.59193 0.00027005 -3.3352 -0.0015216 -2.7433 -0.0012516 456.22143295456516 79.143 0.4536 79.198 79.015 79.468 0.05497 43 17 3 0 0 0 0.80676 1 43698 43698 2.5775 1.7838 1 10539000 + 19034 26039 13112 13347 22460 22460 -0.02908227967895982 HHEVSTEGE 9 Unmodified _HHEVSTEGE_ 0 0 0 ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B ENSG00000119778|ENST00000238789|ATAD2B ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7201538085938 2 512.720153 1023.42575 0.53861 0.00027615 -0.055476 -2.8443E-05 0.48313 0.00024771 512.7201203441505 72.917 0.17852 72.441 72.341 72.519 -0.47588 10 7 2 0 0 0 0.49272 1 39920 39920 7.9102 0 1 375040 19035 3469 13113 13348 22461 22461 -0.08502362252261264 HHFCCYLHR 9 Unmodified _HHFCCYLHR_ 0 0 0 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2685546875 2 608.26857 1214.52259 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.35 102.85 103.85 -0.10458 0 0 0 0.8622 1 56427 56427 0 0 1 19036 10925 13114 13349 22462 22462 -0.07609369777856045 HHFIRHPSKHF 11 Unmodified _HHFIRHPSKHF_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.9237060546875 3 481.589933 1441.74797 NaN NaN NaN NaN NaN NaN NaN 73.46 1 73.46 72.96 73.96 0 0 0 0 0.9428 1 40898 40898 0.50596 0.34663 1 19037 9910 13115 13350 22463 22463 0.04476619008187299 HHFSPDSLHL 10 Unmodified _HHFSPDSLHL_ 0 0 0 REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF REV__ENST00000293826.4_1_17:7464569-7464860:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1971435546875 3 397.196478 1188.56761 0.37731 0.00014987 0.78869 0.00031327 1.166 0.00046313 397.19687865115947 48.994 0.21563 48.622 48.499 48.714 -0.37172 25 10 3 0 0 0 0.5905 1 26315 26315 6.6304 0.43853 1 3161500 + 19038 25251 13116 13351 22464 22464 -0.0191352443928281 HHGRLILL 8 Unmodified _HHGRLILL_ 0 0 0 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.8010864257812 2 479.800886 957.587219 0.77285 0.00037082 -1.9321 -0.00092702 -1.1592 -0.0005562 479.7999065361707 62.504 0.26789 62.016 61.851 62.119 -0.48764 20 12 2 0 0 0 0.61462 1 34053 34053 24.674 0 1 3048200 + 19039 23422 13117 13352 22465 22465 0.10672896362143547 HHGRLILL 8 Unmodified _HHGRLILL_ 0 0 0 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 479.800886 957.587219 0.1851 8.881E-05 -1.9829 -0.00095139 -1.7978 -0.00086258 479.79997209429473 62.253 0.32827 62.253 62.018 62.346 0 0.11817 -2.2675E-05 NaN 24.674 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3594900 + 19040 23422 13117 13352 0.10672896362143547 HHGRLILL 8 Unmodified _HHGRLILL_ 0 0 0 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 REV__nc|ENSG00000184465|A2RRH5-3|WDR27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.800886 957.587219 0.77285 0.00037082 -1.9321 -0.00092702 -1.1592 -0.0005562 479.7999065361707 62.504 0.26789 62.016 61.851 62.119 -0.48764 -0.11817 2.6063E-05 NaN 24.674 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3048200 + 19041 23422 13117 13352 0.10672896362143547 HHGSQYEAQHR 11 Unmodified _HHGSQYEAQHR_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.5437316894531 3 450.541308 1348.60209 -0.63884 -0.00028782 -0.023514 -1.0594E-05 -0.66235 -0.00029842 450.5413522279049 16.749 0.23686 16.75 16.599 16.836 0.0010548 164 67 3 0 0 0 0.7453 1 8315 8315 0 0 1 1782200 19042 289 13118 13353 22466 22466 -0.05826308298492222 HHHHHHHHHF 10 Unmodified _HHHHHHHHHF_ 0 0 0 ENST00000274150.4_1_5:1037707-1038485:+|nuORF;ENSG00000145506|ENST00000296849|NKD2 ENST00000274150.4_1_5:1037707-1038485:+|nuORF ENST00000274150.4_1_5:1037707-1038485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.311767578125 2 700.311869 1398.60919 NaN NaN NaN NaN NaN NaN NaN 109.27 1 109.23 108.73 109.73 -0.047607 0 0 0 1.0061 1 60498 60498 0 0 1 19043 5702 13119 13354 22467 22467 -0.07417486116764849 HHHHHHVL 8 Unmodified _HHHHHHVL_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2654418945312 2 527.265533 1052.51651 NaN NaN NaN NaN NaN NaN NaN 57.668 1 57.668 57.168 58.168 0 0 0 0 0.9706 1 32093 32093 6.3541 0.59368 1 + 19044 16987 13120 13355 22468 22468 -0.007643839028332877 HHHHYHHF 8 Unmodified _HHHHYHHF_ 0 0 0 ENSG00000140807|ENST00000268459|NKD1 ENSG00000140807|ENST00000268459|NKD1 ENSG00000140807|ENST00000268459|NKD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1714172363281 3 384.505869 1150.49578 NaN NaN NaN NaN NaN NaN NaN 21.092 1 21.121 20.621 21.621 0.028357 0 0 0 0.97444 1 10694 10694 1.8442 0 1 19045 5270 13121 13356 22469 22469 -0.07344974282500516 HHHLLPTPP 9 Unmodified _HHHLLPTPP_ 0 0 0 ENST00000359591.8_1_14:23346768-23347047:+|nuORF ENST00000359591.8_1_14:23346768-23347047:+|nuORF ENST00000359591.8_1_14:23346768-23347047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7860717773438 2 524.787976 1047.5614 0.28241 0.0001482 -1.0307 -0.00054092 -0.74833 -0.00039271 524.7874065964971 95.528 0.32104 95.16 95.017 95.338 -0.36814 25 17 2 0 0 0 0.61801 1 52265 52265 0.6015 0.14316 1 763440 19046 12148 13122 13357 22470 22470 0.03952002119831377 HHHPLQAMSGE 11 Unmodified _HHHPLQAMSGE_ 0 0 0 REV__ENSG00000183111|ENST00000333677|ARHGEF37 REV__ENSG00000183111|ENST00000333677|ARHGEF37 MSMS AL20221201_MKP_PDAC_01 4 622.2831420898438 2 622.285471 1242.55639 NaN NaN NaN NaN NaN NaN NaN 17.217 1 14.63 14.13 15.13 -2.5866 0 0 0 0.93933 1 8983 8983 2.9952 0.71247 1 + 19047 23322 13123 13358 22471 22471 -0.05518669805087484 HHHPQCLQPH 10 Unmodified _HHHPQCLQPH_ 0 0 0 ENST00000464749.5_1_9:116152961-116155786:-|nuORF ENST00000464749.5_1_9:116152961-116155786:-|nuORF ENST00000464749.5_1_9:116152961-116155786:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.5291748046875 3 411.861324 1232.56214 0.031157 1.2832E-05 0.87225 0.00035925 0.90341 0.00037208 411.8617489229125 25.56 0.41509 22.677 22.387 22.803 -2.8831 47 20 3 0 0 0 0.69385 1 13919 13919 3.5871 1.0886 1 7063400 19048 13724 13124 13359 22472 22472 -0.0448352650275865 HHHRQVPD 8 Unmodified _HHHRQVPD_ 0 0 0 REV__ENST00000326685.11_1_5:148521630-148521666:+|nuORF REV__ENST00000326685.11_1_5:148521630-148521666:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.331298828125 2 513.254831 1024.49511 NaN NaN NaN NaN NaN NaN NaN 32.7 1 32.729 32.229 33.229 0.029743 0 0 0 0.97444 1 17176 17176 2.3027 0.4585 1 + 19049 25564 13125 13360 22473 22473 -0.016158137221964353 HHHSVPVF 8 Unmodified _HHHSVPVF_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2454223632812 2 480.245944 958.477334 0.61655 0.0002961 -1.4529 -0.00069775 -0.83635 -0.00040165 480.24502361604743 60.024 0.39635 60.024 59.857 60.254 0 37 17 3 0 0 0 0.35156 1 33545 33545 49.669 3.9693 1 5042100 19050 5016 13126 13361 22474 22474 -0.0035652897705631403 HHKCHDRGF 9 Unmodified _HHKCHDRGF_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5115051269531 3 379.510403 1135.50938 -0.79344 -0.00030112 2.3172 0.00087939 1.5237 0.00057827 379.51140497162993 28.304 0.21933 28.304 28.149 28.368 0 17 10 2 0 0 0 0.58466 1 14616 14616 1.1933 0 1 1092800 + 19051 21151 13127 13362 22475 22475 -0.05295484565567676 HHKKKKKRRRK 11 Unmodified _HHKKKKKRRRK_ 0 0 0 REV__nc|ENSG00000160208|Q14684-2|RRP1B REV__nc|ENSG00000160208|Q14684-2|RRP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 765.5066528320312 2 765.508026 1529.0015 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.78 103.28 104.28 -0.048737 0 0 0 0.9435 1 57655 57655 0 0 1 + 19052 21523 13128 13363 22476 22476 0.2581589117830845 HHKRIKKK 8 Unmodified _HHKRIKKK_ 0 0 0 REV__ENST00000554649.1_1_15:95578663-95578804:-|nuORF REV__ENST00000554649.1_1_15:95578663-95578804:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.854248046875 2 537.853984 1073.69342 1.464 0.00078742 -1.0869 -0.00058462 0.37707 0.00020281 537.8532614793021 103.15 0.13853 96.979 96.926 97.064 -6.1757 69 39 2 0 0 0 0.80975 1 69179 69179 0.79363 0 1 8020900 + 19053 28755 13129 13364 22477 22477 0.15951651927434796 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.232421875 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 0.98771 1 0.91442 0.41442 1.4144 -0.073289 0 0 0 0.86004 1 495 495 0.26902 0 1 + 19054 17435 13130 13365 22478 22478 0.07833856196839406 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2314147949219 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 1.3568 1 1.2835 0.78348 1.7835 -0.07329 0 0 0 0.86004 1 678 678 0.26902 0 1 + 19055 17435 13130 13365 22479 22479 0.07833856196839406 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2326049804688 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 1.598 1 1.5247 1.0247 2.0247 -0.07329 0 0 0 0.86004 1 800 800 0.26902 0 1 + 19056 17435 13130 13365 22480 22480 0.07833856196839406 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5551452636719 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 3.0379 1 2.9659 2.4659 3.4659 -0.072029 0 0 0 0.86004 1 1498 1498 0.26902 0 1 + 19057 17435 13130 13365 22481 22481 0.07833856196839406 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2319946289062 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 0.88682 1 0.86619 0.36619 1.3662 -0.020623 0 0 0 0.86004 1 457 457 0.26902 0 1 + 19058 17435 13130 13365 22482 22482 0.07833856196839406 HHKRVLRDF 9 Unmodified _HHKRVLRDF_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2321472167969 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 2.7158 1 2.6987 2.1987 3.1987 -0.017019 0 0 0 0.86004 1 1380 1380 0.26902 0 1 + 19059 17435 13130 13365 22483 22483 0.07833856196839406 HHLHHHHQIHH 11 Unmodified _HHLHHHHQIHH_ 0 0 0 nc|ENSG00000102804|Q15714-4|TSC22D1;ENSG00000102804|ENST00000458659|TSC22D1 nc|ENSG00000102804|Q15714-4|TSC22D1 nc|ENSG00000102804|Q15714-4|TSC22D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9136657714844 3 490.576798 1468.70857 0.16289 7.9912E-05 2.7301 0.0013393 2.893 0.0014193 491.2462999678495 26.188 0.31142 23.237 23.078 23.39 -2.9511 34 17 3 0 0 0 0.631 1 14344 14344 9.7643 4.5658 1 10181000 19060 2066 13131 13366 22484 22484 -0.007040882226419853 HHLHHLVM 8 Unmodified _HHLHHLVM_ 0 0 0 ENST00000396153.6_2_1:51171543-51204583:-|nuORF ENST00000396153.6_2_1:51171543-51204583:-|nuORF ENST00000396153.6_2_1:51171543-51204583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2681884765625 2 512.268896 1022.52324 0.29069 0.00014891 -2.3066 -0.0011816 -2.0159 -0.0010327 512.2675673081482 63.751 0.26962 63.265 63.127 63.397 -0.48617 20 13 2 0 0 0 0.70131 1 34763 34763 17.087 1.8381 1 3032300 19061 12786 13132 13367 22485 22485 0.012877929335331828 HHLKVLSVRI 10 Unmodified _HHLKVLSVRI_ 0 0 0 ENST00000586942.5_1_17:74554658-74555119:+|nuORF;ENST00000590435.5_1_17:74553900-74555122:+|nuORF ENST00000586942.5_1_17:74554658-74555119:+|nuORF ENST00000586942.5_1_17:74554658-74555119:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 601.3807373046875 2 601.380032 1200.74551 NaN NaN NaN NaN NaN NaN NaN 103.04 1 96.861 96.361 97.361 -6.1757 0 0 0 0.98914 1 69108 69108 1.8442 1.3195 1 19062 15630 13133 13368 22486 22486 0.15316770550566616 HHLPHETSRLE 11 Unmodified _HHLPHETSRLE_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.5648498535156 3 452.565342 1354.6742 -0.257 -0.00011631 0.43015 0.00019467 0.17315 7.8362E-05 452.5656523952245 14.218 0.072847 14.218 14.165 14.238 0 38 26 2 0 0 0 0.74046 1 6726 6726 0.45452 0.046251 1 325300 19063 6246 13134 13369 22487 22487 0.011046060552416748 HHLRPHCLPLH 11 Unmodified _HHLRPHCLPLH_ 0 0 0 REV__ENST00000541505.5_1_11:60714057-60714243:-|nuORF REV__ENST00000541505.5_1_11:60714057-60714243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.9141845703125 3 453.912019 1358.71423 0.48458 0.00021996 3.5129 0.0015946 3.9975 0.0018145 453.91346150578596 22.038 0.144 22.052 21.941 22.085 0.013796 9 5 2 0 0 0 0.72952 1 11314 11314 0.50596 0 1 774440 + 19064 28599 13135 13370 22488 22488 0.04921874244814717 HHLSSSPL 8 Unmodified _HHLSSSPL_ 0 0 0 ENST00000377452.3_1_20:18744192-18744426:+|nuORF ENST00000377452.3_1_20:18744192-18744426:+|nuORF ENST00000377452.3_1_20:18744192-18744426:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 439.2318115234375 2 439.229959 876.445365 NaN NaN NaN NaN NaN NaN NaN 92.81 1 86.634 86.134 87.134 -6.1757 0 0 0 0.97348 1 61385 61385 5.7604 0 1 19065 12519 13136 13371 22489 22489 0.0022005854914368683 HHMDEADLL 9 Unmodified _HHMDEADLL_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant;ENSG00000198691|ENST00000370225|ABCA4 nc|ENSG00000107331|Q9BZC7|ABCA2;ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS AL20221201_MKP_PDAC_01 4 360.9197692871094 3 360.830808 1079.47059 NaN NaN NaN NaN NaN NaN NaN 15.386 1 12.859 12.359 13.359 -2.5273 0 0 0 0.84564 1 7889 7889 1.0715 0.29493 1 19066 2490;0 13137 13372 22490 22490 -0.0659625471059826 HHMDEADLL 9 Unmodified _HHMDEADLL_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF;ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant;ENSG00000198691|ENST00000370225|ABCA4 nc|ENSG00000107331|Q9BZC7|ABCA2;ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS AL20221201_MKP_PDAC_01 4 360.8315124511719 3 360.830808 1079.47059 NaN NaN NaN NaN NaN NaN NaN 15.403 1 12.876 12.376 13.376 -2.5273 0 0 0 0.82396 1 7899 7899 2.7352 0 1 19067 2490;0 13137 13372 22491 22491 -0.0659625471059826 HHPFTAPHPS 10 Unmodified _HHPFTAPHPS_ 0 0 0 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 ENSG00000117593|ENST00000649689|DARS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2284545898438 2 564.27269 1126.53083 -0.42578 -0.00024026 0.2386 0.00013464 -0.18718 -0.00010562 564.2735464370687 34.214 0.11488 34.214 34.175 34.289 0 7 5 2 0 0 0 0.22667 1 18030 18030 3.5965 0 1 837910 19068 3319 13138 13373 22492 22492 -0.02737776265212233 HHPGSQLPEL 10 Unmodified _HHPGSQLPEL_ 0 0 0 REV__ENST00000395693.7_2_22:50962011-50962101:-|nuORF REV__ENST00000395693.7_2_22:50962011-50962101:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.1927185058594 3 372.192845 1113.55671 0.99064 0.00036871 1.3883 0.00051672 2.379 0.00088543 372.19332627330897 45.177 0.43062 40.325 40.083 40.513 -4.852 41 28 2 0 0 0 0.6606 1 27761 27761 3.8763 0.28927 1 18106000 + 19069 26481 13139 13374 22493 22493 0.0044707318641030724 HHPHCHGY 8 Unmodified _HHPHCHGY_ 0 0 0 REV__ENST00000489787.1_1_20:48429459-48431791:+|nuORF REV__ENST00000489787.1_1_20:48429459-48431791:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2039489746094 2 494.203753 986.392953 0.93317 0.00046118 -0.74447 -0.00036792 0.1887 9.3258E-05 494.2034102134127 59.778 0.49165 53.663 53.394 53.886 -6.1147 57 27 3 0 0 0 0.80624 1 38440 38440 2.8892 0.31174 1 77459000 + 19070 27868 13140 13375 22494 22494 -0.1007880306547122 HHPPAESI 8 Unmodified _HHPPAESI_ 0 0 0 REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2238159179688 2 444.222134 886.429715 0.42976 0.00019091 2.1515 0.00095574 2.5812 0.0011466 444.22313336755536 51.612 0.21268 51.612 51.54 51.753 0 15 9 2 0 0 0 0.80232 1 28534 28534 5.2307 0.47466 1 3006200 + 19071 26979 13141 13376 22495 22495 -0.01804227967920724 HHPPAESI 8 Unmodified _HHPPAESI_ 0 0 0 REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.222134 886.429715 0.42976 0.00019091 2.1515 0.00095574 2.5812 0.0011466 444.22313336755536 51.612 0.21268 51.612 51.54 51.753 0 -0.12909 -7.1992E-06 NaN 5.2307 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3006200 + 19072 26979 13141 13376 -0.01804227967920724 HHPPAESI 8 Unmodified _HHPPAESI_ 0 0 0 REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.222134 886.429715 0.5424 0.00024095 2.521 0.0011199 3.0634 0.0013608 444.2229382648512 52.22 0.20262 51.786 51.688 51.891 -0.43367 0.045208 0.00032109 NaN 5.2307 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1350700 + 19073 26979 13141 13376 -0.01804227967920724 HHPPAESI 8 Unmodified _HHPPAESI_ 0 0 0 REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF REV__ENST00000431543.6_1_6:112575248-112575670:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 444.222134 886.429715 0.51647 0.00022943 2.0378 0.00090522 2.5542 0.0011347 444.22297320361827 51.884 0.34703 51.825 51.592 51.939 -0.058918 0.083878 -0.00010823 NaN 5.2307 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 11017000 + 19074 26979 13141 13376 -0.01804227967920724 HHPRKCFHC 9 Unmodified _HHPRKCFHC_ 0 0 0 ENST00000478773.5_1_11:3845249-3845988:+|nuORF ENST00000478773.5_1_11:3845249-3845988:+|nuORF ENST00000478773.5_1_11:3845249-3845988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.768798828125 2 582.768737 1163.52292 NaN NaN NaN NaN NaN NaN NaN 12.838 1 12.838 12.338 13.338 0 0 0 0 0.8622 1 6076 6076 0 0 1 19075 14026 13142 13377 22496 22496 -0.052299500579692904 HHPRVCHHL 9 Unmodified _HHPRVCHHL_ 0 0 0 ENST00000439696.2_1_14:69257207-69259821:-|nuORF;ENST00000553375.1_1_14:69257207-69262906:-|nuORF ENST00000439696.2_1_14:69257207-69259821:-|nuORF ENST00000439696.2_1_14:69257207-69259821:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.195068359375 3 379.194526 1134.56175 0.43878 0.00016638 0.30147 0.00011431 0.74024 0.0002807 379.19516142110433 25.234 0.31779 22.351 22.289 22.606 -2.8831 29 18 2 0 0 0 0.3554 1 13786 13786 9.3831 4.4861 1 2959800 19076 13379 13143 13378 22497 22497 -0.00014901431950420374 HHPVSCYL 8 Unmodified _HHPVSCYL_ 0 0 0 ENST00000498732.5_1_X:139854285-139854417:+|nuORF ENST00000498732.5_1_X:139854285-139854417:+|nuORF ENST00000498732.5_1_X:139854285-139854417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.22607421875 2 478.226362 954.438172 -0.35851 -0.00017145 -0.60573 -0.00028968 -0.96424 -0.00046113 478.22595201805905 29.769 0.22821 29.769 29.702 29.931 0 23 13 2 0 0 0 0.61462 1 15450 15450 24.674 3.8027 1 6968700 19077 14430 13144 13379 22498 22498 -0.04086997322940533 HHQQLPHGF 9 Unmodified _HHQQLPHGF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5180053710938 3 367.517663 1099.53116 -0.47501 -0.00017458 2.7033 0.00099353 2.2283 0.00081895 367.5185318912741 36.476 0.20555 36.226 36.109 36.315 -0.2497 15 9 2 0 0 0 0.53666 1 19167 19167 2.9952 0.26005 1 2523600 19078 7770 13145 13380 22499 22499 -0.01462356545334842 HHQVHDDD 8 Unmodified _HHQVHDDD_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000486738.5_1_X:153608322-153609415:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7084655761719 2 501.704837 1001.39512 NaN NaN NaN NaN NaN NaN NaN 98.469 1 98.441 97.941 98.941 -0.028282 0 0 0 0.97444 1 54691 54691 0.69038 0 1 19079 2018 13146 13381 22500 22500 -0.10552095846674092 HHRGEALREG 10 Unmodified _HHRGEALREG_ 0 0 0 ENST00000393562.6_1_X:153762654-153762708:-|nuORF ENST00000393562.6_1_X:153762654-153762708:-|nuORF ENST00000393562.6_1_X:153762654-153762708:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.2959594726562 2 581.297227 1160.5799 NaN NaN NaN NaN NaN NaN NaN 103.1 1 96.923 96.423 97.423 -6.1757 0 0 0 0.97302 1 69146 69146 3.5965 0.31518 1 19080 12706 13147 13382 22501 22501 0.00603512023735675 HHRHHLHY 8 Unmodified _HHRHHLHY_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000480503.5_1_7:45008844-45011824:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5244750976562 3 379.525152 1135.55363 NaN NaN NaN NaN NaN NaN NaN 20.509 1 20.509 20.009 21.009 0 0 0 0 0.97444 1 10324 10324 1.8442 1.1466 1 19081 4813;14058 13148 13383 22502 22502 -0.008727123570452022 HHRIFFLFPHD 11 Unmodified _HHRIFFLFPHD_ 0 0 0 REV__nc|ENSG00000166401|P50452-3|SERPINB8 REV__nc|ENSG00000166401|P50452-3|SERPINB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.1924438476562 4 367.192648 1464.74149 -0.56317 -0.00020679 -0.59426 -0.00021821 -1.1574 -0.000425 367.1927020070787 19.017 0.25025 19.04 18.913 19.163 0.023106 27 14 3 0 0 0 0.74046 1 9530 9530 0.45452 0.35968 1 2536300 + 19082 22114 13149 13384 22503 22503 0.027706810568361107 HHRLRRHHARH 11 Unmodified _HHRLRRHHARH_ 0 0 0 REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.9648742675781 4 378.964963 1511.83075 0.12456 4.7205E-05 0.004803 1.8202E-06 0.12937 4.9025E-05 379.2156722348083 21.412 0.11771 21.425 21.363 21.481 0.013796 22 18 2 0 0 0 0.306 1 10981 10981 0.45452 0 1 2021000 + 19083 25058 13150 13385 22504 22504 0.09530373579582374 HHRMYRRKA 9 Unmodified _HHRMYRRKA_ 0 0 0 REV__L3HYPDH|p.Q56H|1|0.22|ENSG00000126790|chr14:59484149-59484149|C/A|missense_variant REV__L3HYPDH|p.Q56H|1|0.22|ENSG00000126790|chr14:59484149-59484149|C/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.0440368652344 3 418.89648 1253.66761 1.4441 0.00060492 0.25935 0.00010864 1.7034 0.00071357 418.8969378062217 20.359 0.32254 17.666 17.559 17.882 -2.693 26 17 2 0 0 0 0.21874 1 10965 10965 0.26902 0 1 2756300 + 19084 29446 13151 13386 22505 22505 0.050924344135182764 HHSELADILRE 11 Unmodified _HHSELADILRE_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5624084472656 3 440.561597 1318.66296 0.36011 0.00015865 0.51081 0.00022504 0.87092 0.00038369 440.5619460545636 19.024 0.35659 19.032 18.84 19.197 0.0070896 40 19 3 0 0 0 0.73389 1 9713 9713 0.36667 0 1 1067400 + 19085 19034 13152 13387 22506 22506 0.016377839610640876 HHSIFKWSP 9 Unmodified _HHSIFKWSP_ 0 0 0 ENST00000263277.7_1_19:48246012-48246210:+|nuORF ENST00000263277.7_1_19:48246012-48246210:+|nuORF ENST00000263277.7_1_19:48246012-48246210:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5370788574219 3 380.197931 1137.57196 0.76839 0.00029214 2.7812 0.0010574 3.5496 0.0013496 380.1964248877127 22.745 0.69185 19.966 19.613 20.305 -2.7784 177 45 6 0 0 0 0.41742 1 12130 12130 7.609 2.2062 1 317640000 19086 11287 13153 13388 22507 22507 0.008679847742769198 HHSPNEAFCI 10 Unmodified _HHSPNEAFCI_ 0 0 0 REV__nc|ENSG00000116580|Q3T8J9-3|GON4L REV__nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2570190429688 2 577.756015 1153.49748 0.50933 0.00029427 1.3432 0.00077604 1.8525 0.0010703 577.7569981302676 90.856 0.50102 90.361 90.162 90.663 -0.49457 93 33 3 0 0 0 0.6785 1 49588 49588 5.2969 5.2969 1 13443000 + 19087 19048 13154 13389 22508 22508 -0.07313146099409096 HHSSHVASL 9 Unmodified _HHSSHVASL_ 0 0 0 REV__ENSG00000165490|ENST00000533655|DDIAS REV__ENSG00000165490|ENST00000533655|DDIAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7437744140625 2 487.743765 973.472977 0.31133 0.00015185 -0.98627 -0.00048105 -0.67494 -0.0003292 487.7433438015694 39.387 0.33106 39.387 39.177 39.508 0 35 15 3 0 0 0 0.14602 1 21085 21085 28.487 1.6032 1 4515300 + 19088 22013 13155 13390 22509 22509 -0.014820381906247349 HHTIALLI 8 Unmodified _HHTIALLI_ 0 0 0 REV__ENSG00000229474|ENST00000682850|PATL2 REV__ENSG00000229474|ENST00000682850|PATL2 MSMS AL20221201_MKP_PDAC_01 4 459.2794799804688 2 459.281995 916.549437 NaN NaN NaN NaN NaN NaN NaN 77.557 1 71.382 70.882 71.882 -6.1757 0 0 0 0.97348 1 50734 50734 5.7604 0.52976 1 + 19089 24401 13156 13391 22510 22510 0.08782385376662205 HHVDSPASCW 10 Unmodified _HHVDSPASCW_ 0 0 0 ENST00000298125.6_1_13:52334347-52334536:+|nuORF ENST00000298125.6_1_13:52334347-52334536:+|nuORF ENST00000298125.6_1_13:52334347-52334536:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1964416503906 3 380.162669 1137.46618 -0.4475 -0.00017012 -0.14377 -5.4656E-05 -0.59127 -0.00022478 380.1630661036174 20.543 0.16117 20.543 20.485 20.646 0 21 12 2 0 0 0 0.23862 1 10346 10346 1.9064 0.71303 1 1103200 19090 11531 13157 13392 22511 22511 -0.09705719133512503 HHVLEPLSL 9 Unmodified _HHVLEPLSL_ 0 0 0 ENST00000494222.5_1_10:124157443-124172478:+|nuORF;ENST00000368990.7_2_10:124152762-124159877:+|nuORF ENST00000494222.5_1_10:124157443-124172478:+|nuORF ENST00000494222.5_1_10:124157443-124172478:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7958374023438 2 522.795466 1043.57638 1.1575 0.00060514 -0.19574 -0.00010233 0.96176 0.0005028 522.795695076371 87.126 0.35688 80.95 80.806 81.163 -6.1757 24 19 2 0 0 0 0.095405 1 57545 57545 34.102 5.6156 1 11679000 19091 12289 13158 13393 22512 22512 0.056334491971938405 HHVSKLLRK 9 Unmodified _HHVSKLLRK_ 0 0 0 REV__ENSG00000136051|ENST00000332180|WASHC4 REV__ENSG00000136051|ENST00000332180|WASHC4 MSMS AL20221201_MKP_PDAC_01 4 559.3509521484375 2 559.351274 1116.688 NaN NaN NaN NaN NaN NaN NaN 102.49 1 96.31 95.81 96.81 -6.1757 0 0 0 0.84369 1 68772 68772 2.3027 0 1 + 19092 20132 13159 13394 22513 22513 0.13431928344994049 HHWDFDADGCD 11 Unmodified _HHWDFDADGCD_ 0 0 0 REV__CON__P02672 REV__CON__P02672 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.233154296875 2 659.233101 1316.45165 NaN NaN NaN NaN NaN NaN NaN 15.083 1 15.089 14.589 15.589 0.0057774 0 0 0 0.9435 1 7503 7503 0 0 1 + + 19093 16841 13160 13395 22514 22514 -0.19391836072304613 HHWLAQHHL 9 Unmodified _HHWLAQHHL_ 0 0 0 REV__ENST00000372420.5_2_20:44531139-44531184:-|nuORF REV__ENST00000372420.5_2_20:44531139-44531184:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.53662109375 3 393.537058 1177.58934 -0.55509 -0.00021845 -0.3418 -0.00013451 -0.89689 -0.00035296 393.53669441039807 18.586 0.13711 18.586 18.512 18.649 0 43 13 4 0 0 0 0.38785 1 9248 9248 13.042 0.80181 1 5393800 + 19094 26112 13161 13396 22515 22515 0.007653250999510419 HHWLAQHHL 9 Unmodified _HHWLAQHHL_ 0 0 0 REV__ENST00000372420.5_2_20:44531139-44531184:-|nuORF REV__ENST00000372420.5_2_20:44531139-44531184:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 393.537058 1177.58934 -0.55509 -0.00021845 -0.3418 -0.00013451 -0.89689 -0.00035296 393.53669441039807 18.586 0.13711 18.586 18.512 18.649 0 0 0 NaN 13.042 43 13 4 NaN NaN NaN NaN 0 NaN NaN 0 5393800 + 19095 26112 13161 13396 0.007653250999510419 HHYEGTASC 9 Unmodified _HHYEGTASC_ 0 0 0 ENST00000389262.8_1_22:19048277-19109719:-|nuORF;nc|ENSG00000070413|P98153-3|DGCR2;nc|ENSG00000070413|P98153-2|DGCR2;ENSG00000070413|ENST00000263196|DGCR2 ENST00000389262.8_1_22:19048277-19109719:-|nuORF ENST00000389262.8_1_22:19048277-19109719:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.6981811523438 2 502.698166 1003.38178 0.74297 0.00037349 -0.79895 -0.00040163 -0.055975 -2.8138E-05 502.6979903130878 57.614 0.42247 57.614 57.395 57.817 0 81 20 6 0 0 0 0.55144 1 32121 32121 4.3292 1.44 1 25445000 19096 1028 13162 13397 22516 22516 -0.1197766995027223 HHYHPGAG 8 Unmodified _HHYHPGAG_ 0 0 0 REV__nc|ENSG00000178573|O75444|MAF REV__nc|ENSG00000178573|O75444|MAF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.1998596191406 2 438.198993 874.383434 NaN NaN NaN NaN NaN NaN NaN 24.557 1 24.557 24.057 25.057 0 0 0 0 0.97444 1 12554 12554 0.79363 0 1 + 19097 23052 13163 13398 22517 22517 -0.058782480793411196 HHYHQTHRHR 10 Unmodified _HHYHQTHRHR_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.8696594238281 3 470.23292 1407.67693 0.04676 2.1988E-05 -3.981 -0.001872 -3.9343 -0.00185 470.2324140248082 54.509 0.07674 54.043 54.007 54.084 -0.46664 5 3 2 0 0 0 0.23993 1 29532 29532 1.7423 0.41263 1 802490 19098 8505 13164 13399 22518 22518 -0.01060080976617428 HHYHRRRRRRR 11 Unmodified _HHYHRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.483642578125 2 843.486479 1684.95841 NaN NaN NaN NaN NaN NaN NaN 87.469 1 87.523 87.023 88.023 0.053352 0 0 0 0.9435 1 48639 48639 0 0 1 + 19099 25664 13165 13400 22519 22519 0.1433251417356587 HHYHRRRRRRR 11 Unmodified _HHYHRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.7714233398438 2 843.486479 1684.95841 NaN NaN NaN NaN NaN NaN NaN 96.883 1 96.876 96.376 97.376 -0.007019 0 0 0 0.9435 1 53802 53802 0 0 1 + 19100 25664 13165 13400 22520 22520 0.1433251417356587 HHYRDRTAF 9 Unmodified _HHYRDRTAF_ 0 0 0 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7950439453125 2 601.794321 1201.57409 -0.13787 -8.2968E-05 0.95306 0.00057355 0.81519 0.00049058 602.2963519514018 62.358 0.63168 62.358 62.143 62.774 0 102 37 4 0 0 0 0.43463 1 34833 34833 10.824 10.824 1 84382000 + 19101 24367 13166 13401 22521 22521 -0.01863586487934299 HHYRQQFLDKA 11 Unmodified _HHYRQQFLDKA_ 0 0 0 REV__ENSG00000185352|ENST00000376705|HS6ST3 REV__ENSG00000185352|ENST00000376705|HS6ST3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.866455078125 2 721.868017 1441.72148 NaN NaN NaN NaN NaN NaN NaN 32.52 1 32.52 32.02 33.02 0 0 0 0 0.93969 1 16994 16994 2.7352 0.23671 1 + 19102 23496 13167 13402 22522 22522 0.018288853262220073 HIAENILSY 9 Unmodified _HIAENILSY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.27880859375 2 530.277106 1058.53966 NaN NaN NaN NaN NaN NaN NaN 50.857 1 50.857 50.357 51.357 0 0 0 0 0.18753 1 28057 28057 32.305 7.6316 1 19103 1093;7444 13168 13403 22523 22523 0.01273152580643 HIAENILSY 9 Unmodified _HIAENILSY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.814697265625 2 530.277106 1058.53966 -0.17581 -9.3227E-05 0.51405 0.00027259 0.33824 0.00017936 530.2772498633619 51.365 0.28848 50.951 50.68 50.969 -0.41351 17 14 2 0 0 0 0.18482 1 27648 27648 18.146 6.5061 1 4674500 19104 1093;7444 13168 13403 22524 22524 0.01273152580643 HIASHLFGIFY 11 Unmodified _HIASHLFGIFY_ 0 0 0 REV__nc|ENSG00000213439|P0C628|OR5AC1 REV__nc|ENSG00000213439|P0C628|OR5AC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.5639038085938 3 435.564391 1303.67134 -0.53347 -0.00023236 -0.56227 -0.0002449 -1.0957 -0.00047727 435.5638352183575 36.328 0.20478 36.079 35.927 36.132 -0.2497 17 8 3 0 0 0 0.68777 1 19054 19054 5.4027 0.20427 1 1590400 + 19105 29936 13169 13404 22525 22525 0.03165382668385064 HICAVVVEY 9 Carbamidomethyl (C) _HIC(Carbamidomethyl (C))AVVVEY_ HIC(1)AVVVEY HIC(60)AVVVEY 0 1 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2737426757812 2 545.273509 1088.53247 0.62739 0.0003421 -1.6345 -0.00089126 -1.0071 -0.00054916 545.2725922923171 54.598 0.45372 48.732 48.542 48.996 -5.8653 60 27 3 0 0 0 0.023761 2 34725 34595;34725 59.795 34.396 1 56876000 19106 4035 13170 13405 22526;22527 22527 407 -0.008259032914565978 HIDAFCLESQM 11 Unmodified _HIDAFCLESQM_ 0 0 0 REV__nc|ENSG00000148908|O43665-1|RGS10 REV__nc|ENSG00000148908|O43665-1|RGS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.8587341308594 3 431.858258 1292.55294 0.13599 5.873E-05 -0.14251 -6.1544E-05 -0.0065166 -2.8143E-06 431.8584329047319 66.4 0.27209 65.916 65.774 66.046 -0.48323 21 13 2 0 0 0 0.71728 1 36267 36267 2.6312 0.54523 1 2176300 + 19107 29697 13171 13406 22528 22528 -0.08163100693968772 HIDRVYRDDTF 11 Unmodified _HIDRVYRDDTF_ 0 0 0 nc|ENSG00000162522|Q9P206|NHSL3;nc|ENSG00000162522|Q9P206-3|NHSL3;ENSG00000162522|ENST00000401073|KIAA1522 nc|ENSG00000162522|Q9P206|NHSL3 nc|ENSG00000162522|Q9P206|NHSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.568603515625 3 479.568752 1435.68443 -0.52474 -0.00025165 -0.2193 -0.00010517 -0.74404 -0.00035682 479.5688876314365 27.815 0.16334 27.815 27.721 27.884 0 14 7 3 0 0 0 0.69316 1 14352 14352 13.519 9.1125 1 1080300 19108 6870 13172 13407 22529 22529 -0.015988310102102332 HIEAYVEHF 9 Unmodified _HIEAYVEHF_ 0 0 0 ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3 ENSG00000000457|ENST00000367771|SCYL3 ENSG00000000457|ENST00000367771|SCYL3 MSMS AL20221201_MKP_PDAC_01 4 382.1870727539062 3 382.185579 1143.53491 NaN NaN NaN NaN NaN NaN NaN 23.541 1 20.714 20.214 21.214 -2.8273 0 0 0 0.70111 1 12747 12747 5.7319 2.9967 1 19109 250 13173 13408 22530 22530 -0.03111731562148634 HIEQPDHDI 9 Unmodified _HIEQPDHDI_ 0 0 0 REV__ENSG00000149507|ENST00000278855|OOSP2 REV__ENSG00000149507|ENST00000278855|OOSP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2581176757812 2 552.259445 1102.50434 NaN NaN NaN NaN NaN NaN NaN 81.763 1 81.763 81.263 82.263 0 0 0 0 0.82396 1 45374 45374 4.756 2.1785 1 + 19110 21002 13174 13409 22531 22531 -0.04281509947190898 HIFSIPAGSL 10 Unmodified _HIFSIPAGSL_ 0 0 0 REV__nc|ENSG00000110148|P32239-3|CCKBR REV__nc|ENSG00000110148|P32239-3|CCKBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2909545898438 2 521.290017 1040.56548 1.2598 0.00065672 0.0067587 3.5233E-06 1.2666 0.00066025 521.2901618550935 97.021 0.23624 90.845 90.693 90.929 -6.1757 17 13 2 0 0 0 0.31022 1 64287 64287 26.884 2.6737 1 10900000 + 19111 18693 13175 13410 22532 22532 0.04682046822927077 HIGVEFMFI 9 Unmodified _HIGVEFMFI_ 0 0 0 nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH;ENST00000497326.1_1_7:44706423-44714208:+|nuORF;nc|ENSG00000105953|Q02218-3|OGDH nc|ENSG00000105953|Q02218-2|OGDH nc|ENSG00000105953|Q02218-2|OGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7827758789062 2 546.78097 1091.54739 0.59884 0.00032744 -0.50887 -0.00027824 0.089972 4.9195E-05 546.7812672842216 50.847 0.10548 50.847 50.833 50.938 0 8 5 2 0 0 0 0.30202 1 28068 28068 18.135 7.3111 1 1504200 19112 2381 13176 13411 22533 22533 0.005275885765513522 HIHDRAHVIKK 11 Unmodified _HIHDRAHVIKK_ 0 0 0 nc|ENSG00000178053|P58340-2|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-2|MLF1 nc|ENSG00000178053|P58340-2|MLF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9339294433594 3 451.933588 1352.77894 0.6472 0.00029249 0.25676 0.00011604 0.90396 0.00040853 451.9336708470197 100.89 0.18484 100.85 100.71 100.9 -0.04216 18 6 4 0 0 0 0.74429 1 56057 56057 0.094841 0.011491 1 8151100 19113 8726 13177 13412 22534 22534 0.11665772322430712 HIHDRAHVIKK 11 Unmodified _HIHDRAHVIKK_ 0 0 0 nc|ENSG00000178053|P58340-2|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-2|MLF1 nc|ENSG00000178053|P58340-2|MLF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 451.933588 1352.77894 0.41548 0.00018777 -1.5811 -0.00071457 -1.1657 -0.0005268 451.9325716134458 100.8 0.069862 100.8 100.76 100.83 0 -0.028241 -0.0023284 NaN 0.094841 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 185770 19114 8726 13177 13412 0.11665772322430712 HIHDRAHVIKK 11 Unmodified _HIHDRAHVIKK_ 0 0 0 nc|ENSG00000178053|P58340-2|MLF1;nc|ENSG00000178053|P58340-5|MLF1;nc|ENSG00000178053|P58340-4|MLF1;nc|ENSG00000178053|P58340|MLF1;ENSG00000178053|ENST00000466246|MLF1;nc|ENSG00000178053|P58340-3|MLF1 nc|ENSG00000178053|P58340-2|MLF1 nc|ENSG00000178053|P58340-2|MLF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 451.933588 1352.77894 0.6472 0.00029249 0.25676 0.00011604 0.90396 0.00040853 451.9336708470197 100.89 0.18484 100.85 100.71 100.9 -0.04216 0.028241 0.00016343 NaN 0.094841 18 6 4 NaN NaN NaN NaN 0 NaN NaN 0 8151100 19115 8726 13177 13412 0.11665772322430712 HIHEEDEEF 9 Unmodified _HIHEEDEEF_ 0 0 0 REV__ENSG00000165650|ENST00000334464|PDZD8 REV__ENSG00000165650|ENST00000334464|PDZD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.7465209960938 2 592.746367 1183.47818 1.0103 0.00059888 -0.16187 -9.5945E-05 0.84848 0.00050293 592.7461386896556 81.227 0.56773 81.287 80.966 81.533 0.059929 90 21 6 0 0 0 0.54444 1 44945 44945 4.756 0.42677 1 11393000 + 19116 22032 13178 13413 22535 22535 -0.10621823909355044 HIHGTLLQLT 10 Unmodified _HIHGTLLQLT_ 0 0 0 ENST00000473004.5_1_2:43599207-43625181:-|nuORF ENST00000473004.5_1_2:43599207-43625181:-|nuORF ENST00000473004.5_1_2:43599207-43625181:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2204895019531 3 378.220624 1131.64004 NaN NaN NaN NaN NaN NaN NaN 25.32 1 25.303 24.803 25.803 -0.017006 0 0 0 0.92825 1 12964 12964 3.5871 0 1 19117 13916 13179 13414 22536 22536 0.0794880963428568 HIHKAAEDLF 10 Unmodified _HIHKAAEDLF_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2091369628906 3 394.208495 1179.60366 0.79706 0.00031421 0.45485 0.00017931 1.2519 0.00049352 394.20827598973415 17.783 0.79491 15.197 15.084 15.879 -2.5866 122 72 2 0 0 0 0.6606 1 9491 9491 6.6304 3.0433 1 2841100 19118 840 13180 13415 22537 22537 0.021039327375319772 HIHPACLP 8 Unmodified _HIHPACLP_ 0 0 0 nc|ENSG00000137747|Q9BYE2-3|TMPRSS13;nc|ENSG00000137747|Q9BYE2-2|TMPRSS13;ENSG00000137747|ENST00000524993|TMPRSS13;nc|ENSG00000137747|Q9BYE2|TMPRSS13 nc|ENSG00000137747|Q9BYE2-3|TMPRSS13 nc|ENSG00000137747|Q9BYE2-3|TMPRSS13 MSMS AL20221201_MKP_PDAC_01 4 444.2319946289062 2 444.231448 886.448342 NaN NaN NaN NaN NaN NaN NaN 91.176 1 85 84.5 85.5 -6.1757 0 0 0 0.9185 1 60264 60264 17.087 2.5049 1 19119 4963 13181 13416 22538 22538 0.0005761040229117498 HIHQHKHLAS 10 Unmodified _HIHQHKHLAS_ 0 0 0 REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229 REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2204284667969 3 403.219617 1206.63702 -0.084519 -3.408E-05 1.9598 0.00079022 1.8753 0.00075614 403.22000458730963 20.284 0.16166 20.295 20.208 20.37 0.010553 19 9 3 0 0 0 0.6785 1 10332 10332 2.8433 0 1 900430 + 19120 24671 13182 13417 22539 22539 0.041969793001499056 HIIEETQVF 9 Unmodified _HIIEETQVF_ 0 0 0 nc|ENSG00000095539|Q9NTN9-3|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G nc|ENSG00000095539|Q9NTN9-3|SEMA4G nc|ENSG00000095539|Q9NTN9-3|SEMA4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2899780273438 2 558.290214 1114.56587 -0.18642 -0.00010407 -0.56587 -0.00031592 -0.75229 -0.00041999 558.289518116313 48.511 0.28452 48.511 48.373 48.658 0 32 13 3 0 0 0 0.078417 1 26622 26622 38.151 16.405 1 4544500 19121 1656 13183 13418 22540 22540 0.01317421752082737 HIIENIVAV 9 Unmodified _HIIENIVAV_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2983093261719 2 504.297842 1006.58113 -0.30665 -0.00015464 0.61794 0.00031163 0.31129 0.00015698 504.29806939454875 55.589 0.38345 55.589 55.389 55.773 0 62 30 3 0 0 0 0.015445 2 30823 30823;30925 68.081 31.954 1 31457000 19122 8108 13184 13419 22541;22542 22541 0.07810333339944009 HIIENIVAV 9 Unmodified _HIIENIVAV_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2975769042969 2 504.297842 1006.58113 -0.98754 -0.00049802 0.24528 0.0001237 -0.74226 -0.00037432 504.2979327462466 56.07 0.35303 55.584 55.414 55.767 -0.48554 51 17 4 0 0 0 0.031062 2 30391 30391;30489 54.774 24.274 1 46815000 19123 8108 13184 13419 22543;22544 22543 0.07810333339944009 HIIENIVAV 9 Unmodified _HIIENIVAV_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2981872558594 2 504.297842 1006.58113 0.80764 0.00040729 0.21134 0.00010658 1.019 0.00051387 504.29787636689065 63.271 0.70695 57.095 56.836 57.543 -6.1757 86 39 3 0 0 0 0.024882 3 40915 40789;40915;41059 58.679 29.597 1 89416000 19124 8108 13184 13419 22545;22546;22547 22546 0.07810333339944009 HIIENIVAV 9 Unmodified _HIIENIVAV_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2983093261719 2 504.297842 1006.58113 0.81122 0.0004091 0.85523 0.00043129 1.6665 0.00084039 504.29818783627974 75.787 0.69788 69.612 69.235 69.932 -6.1757 57 37 2 0 0 0 0.012148 2 49721 49551;49721 74.423 30.564 1 7733300 19125 8108 13184 13419 22548;22549 22549 0.07810333339944009 HIIENIVAV 9 Unmodified _HIIENIVAV_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 504.297842 1006.58113 -0.14547 -7.3359E-05 1.4852 0.00074896 1.3397 0.0006756 504.2992680537511 55.685 0.30799 55.616 55.435 55.743 -0.068737 0.019685 0.0010162 NaN 68.081 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5150400 19126 8108 13184 13419 0.07810333339944009 HIIGRIESY 9 Unmodified _HIIGRIESY_ 0 0 0 ENSG00000179632|ENST00000322428|MAF1 ENSG00000179632|ENST00000322428|MAF1 ENSG00000179632|ENST00000322428|MAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2979736328125 2 544.298373 1086.58219 -0.34163 -0.00018595 -0.20582 -0.00011203 -0.54745 -0.00029798 544.2981675852877 32.332 0.22959 32.203 32.015 32.245 -0.12915 12 8 2 0 0 0 0.36964 1 16830 16830 13.906 1.6654 1 1377000 19127 8850 13185 13420 22550 22550 0.04236547708865146 HIIGRIESY 9 Unmodified _HIIGRIESY_ 0 0 0 ENSG00000179632|ENST00000322428|MAF1 ENSG00000179632|ENST00000322428|MAF1 ENSG00000179632|ENST00000322428|MAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.298583984375 2 544.298373 1086.58219 1.1229 0.0006112 -1.3721 -0.00074681 -0.24915 -0.00013561 544.297647577472 37.539 0.30337 33.256 33.102 33.406 -4.2835 29 17 2 0 0 0 0.062454 1 21997 21997 41.956 21.502 1 15150000 19128 8850 13185 13420 22551 22551 0.04236547708865146 HIILIEPLMW 10 Unmodified _HIILIEPLMW_ 0 0 0 REV__nc|ENSG00000102226|P51784|USP11;REV__ENST00000467378.1_1_X:47106498-47106892:+|nuORF REV__nc|ENSG00000102226|P51784|USP11 MSMS AL20221201_MKP_PDAC_01 4 632.8594360351562 2 632.859752 1263.70495 NaN NaN NaN NaN NaN NaN NaN 102.31 1 96.138 95.638 96.638 -6.1757 0 0 0 0.5638 1 68663 68663 23.148 7.3012 1 + 19129 18229;27432 13186 13421 22552 22552 0.0836466811590526 HIISFTVKY 9 Unmodified _HIISFTVKY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3164672851562 2 554.313492 1106.61243 1.211 0.00067127 0.35114 0.00019464 1.5621 0.00086591 554.3134694902096 50.482 0.26432 50.433 50.291 50.555 -0.048824 37 12 4 0 0 0 0.0081 1 27279 27279 114.65 64.716 1 4004700 19130 8006 13187 13422 22553 22553 0.06338906374048747 HIKLQQHKK 9 Unmodified _HIKLQQHKK_ 0 0 0 REV__ENST00000470606.5_1_13:28000472-28009731:+|nuORF REV__ENST00000470606.5_1_13:28000472-28009731:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2415466308594 3 387.24013 1158.69856 NaN NaN NaN NaN NaN NaN NaN 32.058 1 31.929 31.429 32.429 -0.12915 0 0 0 0.82283 1 16683 16683 4.897 2.1618 1 + 19131 19326 13188 13423 22554 22554 0.12555910999412845 HIKRMFHL 8 Unmodified _HIKRMFHL_ 0 0 0 REV__nc|ENSG00000101109|Q13043-2|STK4 REV__nc|ENSG00000101109|Q13043-2|STK4 MSMS AL20221201_MKP_PDAC_01 4 361.2108459472656 3 361.207773 1080.60149 NaN NaN NaN NaN NaN NaN NaN 21.397 1 18.662 18.162 19.162 -2.7348 0 0 0 0.95607 1 11455 11455 6.7232 0.099709 1 + 19132 18130 13189 13424 22555 22555 0.06441225518778992 HIKTAVNLPL 10 Unmodified _HIKTAVNLPL_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MSMS AL20221201_MKP_PDAC_01 4 369.2305908203125 3 369.229119 1104.66553 NaN NaN NaN NaN NaN NaN NaN 30.158 1 26.661 26.161 27.161 -3.497 0 0 0 0.8634 1 17003 17003 9.544 1.5986 1 19133 1936 13190 13425 22556 22556 0.11738284156717782 HIKYPKDRGY 10 Unmodified _HIKYPKDRGY_ 0 0 0 ENSG00000196660|ENST00000366926|SLC30A10;nc|ENSG00000196660|Q6XR72-2|SLC30A10;ENST00000484079.1_1_1:220088793-220091843:-|nuORF;ENST00000356609.2_1_1:220088793-220101375:-|nuORF ENSG00000196660|ENST00000366926|SLC30A10 ENSG00000196660|ENST00000366926|SLC30A10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8446655273438 2 638.843479 1275.67241 NaN NaN NaN NaN NaN NaN NaN 62.31 1 62.31 61.81 62.81 0 0 0 0 1.0004 1 34752 34752 1.4819 0.8804 1 19134 9856 13191 13426 22557 22557 0.04559597037268759 HILGLLSVSEV 11 Unmodified _HILGLLSVSEV_ 0 0 0 REV__ENSG00000204010|ENST00000371809|IFIT1B REV__ENSG00000204010|ENST00000371809|IFIT1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5649719238281 3 389.564168 1165.67067 0.77129 0.00030047 0.40627 0.00015827 1.1776 0.00045873 389.5642683231641 47.255 0.26115 47.219 47.102 47.364 -0.036095 30 12 3 0 0 0 0.54936 1 25456 25456 7.4771 0 1 2781000 + 19135 24133 13192 13427 22558 22558 0.0944654322865972 HILLCLKIKV 10 Unmodified _HILLCLKIKV_ 0 0 0 REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF REV__ENST00000380050.7_1_7:90836599-90836752:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.385498046875 2 590.385937 1178.75732 NaN NaN NaN NaN NaN NaN NaN 4.8075 1 4.8012 4.3012 5.3012 -0.0062971 0 0 0 1.0061 1 2427 2427 0 0 1 + 19136 26304 13193 13428 22559 22559 0.17509251249498448 HILNLEEEY 9 Unmodified _HILNLEEEY_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF;ENST00000484412.1_1_2:242169018-242170248:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2847900390625 2 580.285128 1158.5557 0.4333 0.00025144 -0.72448 -0.0004204 -0.29118 -0.00016897 580.2845328270365 50.706 0.26335 50.706 50.518 50.782 0 19 12 2 0 0 0 0.08691 1 27915 27915 36.127 15.673 1 8191400 19137 3152 13194 13429 22560 22560 -0.017231859731282384 HILRLFHCL 9 Unmodified _HILRLFHCL_ 0 0 0 ENSG00000173572|ENST00000342929|NLRP13 ENSG00000173572|ENST00000342929|NLRP13 ENSG00000173572|ENST00000342929|NLRP13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5548095703125 3 384.555061 1150.64335 NaN NaN NaN NaN NaN NaN NaN 15.79 1 15.79 15.29 16.29 0 0 0 0 0.84369 1 7639 7639 1.1933 0.56652 1 19138 8340 13195 13430 22561 22561 0.07405781207285145 HILSRRKLRL 10 Unmodified _HILSRRKLRL_ 0 0 0 REV__ENST00000395824.5_1_17:16471178-16472262:-|nuORF REV__ENST00000395824.5_1_17:16471178-16472262:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 431.2876892089844 3 431.285962 1290.83606 NaN NaN NaN NaN NaN NaN NaN 98.182 1 92.006 91.506 92.506 -6.1757 0 0 0 0.76982 1 65094 65094 13.615 0.74226 1 + 19139 26488 13196 13431 22562 22562 0.20227239598830238 HILWLKDY 8 Unmodified _HILWLKDY_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.297119140625 2 544.300384 1086.58622 -1.049 -0.00057097 -2.7663 -0.0015057 -3.8153 -0.0020767 544.2986162914801 32.33 0.11289 32.33 32.242 32.355 0 9 5 3 0 0 0 0.64853 1 16886 16886 21.747 2.3076 1 1872500 19140 8170 13197 13432 22563 22563 0.04638637202560858 HIMALIEQY 9 Unmodified _HIMALIEQY_ 0 0 0 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2887573242188 2 559.289159 1116.56377 0.20149 0.00011269 -0.60506 -0.0003384 -0.40357 -0.00022571 559.2886211492148 61.531 0.19433 61.041 60.943 61.137 -0.48932 11 8 2 0 0 0 0.22317 1 33537 33537 20.871 11.524 1 994250 19141 6750 13198 13433 22564 22564 0.010146697426307583 HIMARNVSCFL 11 Unmodified _HIMARNVSCFL_ 0 0 0 nc|nan|Q53FE4-2|C4orf17;ENSG00000138813|ENST00000326581|C4orf17 nc|nan|Q53FE4-2|C4orf17 nc|nan|Q53FE4-2|C4orf17 MSMS AL20221201_MKP_PDAC_01 4 430.8890380859375 3 430.88637 1289.63728 NaN NaN NaN NaN NaN NaN NaN 19.505 1 16.849 16.349 17.349 -2.6564 0 0 0 0.93224 1 10339 10339 2.6312 0 1 19142 5111 13199 13434 22565 22565 0.004048949134812574 HIMEHLEGV 9 Oxidation (M) _HIM(Oxidation (M))EHLEGV_ HIM(1)EHLEGV HIM(48)EHLEGV 0 0 1 nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF nc|ENSG00000180398|Q8NI22-3|MCFD2 nc|ENSG00000180398|Q8NI22-3|MCFD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7603149414062 2 540.760766 1079.50698 -0.31817 -0.00017206 0.12822 6.9339E-05 -0.18995 -0.00010272 540.761119976841 25.861 0.69846 25.861 25.447 26.145 0 39 24 3 0 0 0 0.042911 1 13248 13248 48.346 26.599 1 2749900 19143 8899 13200 13435 22566 22566 1502 -0.029593778138860216 HIMEIFSTY 9 Oxidation (M) _HIM(Oxidation (M))EIFSTY_ HIM(1)EIFSTY HIM(60)EIFSTY 0 0 1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7709350585938 2 578.7708 1155.52705 0.16079 9.3059E-05 0.58755 0.00034006 0.74834 0.00043312 578.7711613743452 52.454 0.35025 52.454 52.223 52.573 0 27 15 2 0 0 0 0.023164 1 28973 28973 60.39 36.369 1 9715600 19144 10387 13201 13436 22567 22567 1690 -0.044496268739294464 HIMEIFSTY 9 Oxidation (M) _HIM(Oxidation (M))EIFSTY_ HIM(1)EIFSTY HIM(51)EIFSTY 0 0 1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.771240234375 2 578.7708 1155.52705 0.38547 0.0002231 0.3108 0.00017988 0.69627 0.00040298 578.7711604329679 52.957 0.46307 52.505 52.299 52.762 -0.45173 80 23 5 0 0 0 0.038285 2 28601 28601;28716 50.855 33.913 1 56610000 19145 10387 13201 13436 22568;22569 22568 1690 -0.044496268739294464 HIMEIFSTY 9 Unmodified _HIMEIFSTY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.774169921875 2 570.773342 1139.53213 0.37885 0.00021624 -0.2134 -0.0001218 0.16545 9.4432E-05 570.7732190561043 66.623 0.34876 66.14 65.984 66.333 -0.48323 31 16 2 0 0 0 0.023164 1 36386 36386 60.39 31.903 1 5147300 19146 10387 13201 13437 22570 22570 -0.03205323011297878 HIMEIFSTY 9 Unmodified _HIMEIFSTY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7734985351562 2 570.773342 1139.53213 0.99915 0.00057029 0.029826 1.7024E-05 1.029 0.00058731 570.7734037662497 66.128 0.30833 66.138 65.993 66.301 0.0095673 28 15 2 0 0 0 0.087258 1 36324 36324 36.044 24.404 1 5848600 19147 10387 13201 13437 22571 22571 -0.03205323011297878 HIMEIFSTY 9 Unmodified _HIMEIFSTY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7736206054688 2 570.773342 1139.53213 0.78079 0.00044565 0.21997 0.00012555 1.0008 0.00057121 570.7734476009033 92.659 0.67354 86.484 86.166 86.84 -6.1757 103 41 3 0 0 0 0.023164 1 61235 61235 60.39 38.643 1 130230000 19148 10387 13201 13437 22572 22572 -0.03205323011297878 HINDFKEAMQ 10 Unmodified _HINDFKEAMQ_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.7901000976562 2 616.790055 1231.56556 0.51908 0.00032016 0.34163 0.00021071 0.8607 0.00053087 616.7902328982667 68.555 0.36568 68.075 67.877 68.242 -0.48071 59 16 5 0 0 0 0.32072 1 37524 37524 26.268 3.5319 1 43726000 19149 1143 13202 13438 22573 22573 -0.04096321239421741 HINDFKEAMQ 10 Unmodified _HINDFKEAMQ_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5293579101562 3 411.529129 1231.56556 0.20594 8.4752E-05 0.50767 0.00020892 0.71361 0.00029367 411.52933649208603 68.007 0.18555 68.032 67.941 68.127 0.025146 13 8 2 0 0 0 0.60623 1 37370 37370 6.1918 0 1 3582200 19150 1143 13202 13438 22574 22574 -0.04096321239421741 HINEEDDI 8 Unmodified _HINEEDDI_ 0 0 0 REV__ENSG00000101542|ENST00000262717|CDH20 REV__ENSG00000101542|ENST00000262717|CDH20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7190551757812 2 492.717079 983.419604 NaN NaN NaN NaN NaN NaN NaN 82.146 1 81.651 81.151 82.151 -0.4952 0 0 0 0.97444 1 44974 44974 4.756 1.8668 1 + 19151 18181 13203 13439 22575 22575 -0.07276880483800596 HIPARYMLI 9 Unmodified _HIPARYMLI_ 0 0 0 ENST00000541076.6_1_12:123640092-123640227:-|nuORF ENST00000541076.6_1_12:123640092-123640227:-|nuORF ENST00000541076.6_1_12:123640092-123640227:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2806396484375 2 557.315512 1112.61647 1.5177 0.00084582 -3.6668 -0.0020436 -2.1492 -0.0011978 557.3134700565769 95.788 0.1795 89.612 89.481 89.66 -6.1757 19 11 2 0 0 0 0.10925 1 63376 63376 32.117 13.982 1 12406000 19152 15039 13204 13440 22576 22576 0.06466672596093304 HIQDIVVHY 9 Unmodified _HIQDIVVHY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2978515625 2 562.298373 1122.58219 -0.27856 -0.00015664 -0.26062 -0.00014655 -0.53918 -0.00030318 562.2978907241112 41.195 0.33955 41.195 41.024 41.364 0 38 16 3 0 0 0 0.0024112 1 22152 22152 129.77 73.595 1 16900000 19153 7093 13205 13441 22577 22577 0.025805477088624684 HIQDIVVHY 9 Unmodified _HIQDIVVHY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2984008789062 2 562.298373 1122.58219 -0.0010968 -6.1675E-07 -0.20653 -0.00011613 -0.20763 -0.00011675 562.2982437985852 41.528 0.24037 41.225 41.047 41.287 -0.30304 26 10 3 0 0 0 0.012668 1 21963 21963 72.968 36.841 1 17831000 19154 7093 13205 13441 22578 22578 0.025805477088624684 HIQDIVVHY 9 Unmodified _HIQDIVVHY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2994384765625 2 562.298373 1122.58219 0.67393 0.00037895 1.6709 0.00093957 2.3449 0.0013185 562.2985035473425 46.404 0.37319 41.324 41.064 41.437 -5.0805 56 27 3 0 0 0 0.0087807 2 28523 28523;28669 106.94 50.763 1 134590000 19155 7093 13205 13441 22579;22580 22579 0.025805477088624684 HIQEIVQNTI 10 Unmodified _HIQEIVQNTI_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8876647949219 3 398.887422 1193.64044 -0.61228 -0.00024423 0.83821 0.00033435 0.22593 9.0121E-05 398.88762435310275 17.47 0.23276 17.47 17.353 17.586 0 102 35 4 0 0 0 0.64183 1 8584 8584 8.9762 1.0308 1 3647900 19156 6907 13206 13442 22581 22581 0.051361845634801284 HIQEIVQNTI 10 Unmodified _HIQEIVQNTI_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 398.887422 1193.64044 -0.5279 -0.00021057 0.22901 9.135E-05 -0.29889 -0.00011922 398.88784475355305 17.642 0.053673 17.656 17.642 17.695 0.013865 0.092988 -0.00065564 NaN 8.9762 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 442980 19157 6907 13206 13442 0.051361845634801284 HIQKNPCNHS 10 Unmodified _HIQKNPCNHS_ 0 0 0 ENST00000554171.1_3_14:42170598-42236083:+|nuORF ENST00000554171.1_3_14:42170598-42236083:+|nuORF ENST00000554171.1_3_14:42170598-42236083:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 588.778076171875 2 589.280189 1176.54582 1.2857 0.00075765 -2.9467 -0.0017364 -1.661 -0.00097878 589.2784366223458 79.569 0.26526 73.393 73.235 73.5 -6.1757 26 15 2 0 0 0 0.22811 1 52192 52192 10.074 0 1 14046000 19158 15204 13207 13443 22582 22582 -0.035386524595196533 HIQLVALSSF 10 Unmodified _HIQLVALSSF_ 0 0 0 REV__ENSG00000198795|ENST00000361524|ZNF521 REV__ENSG00000198795|ENST00000361524|ZNF521 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.75830078125 2 557.816399 1113.61824 0.25663 0.00014315 -1.5619 -0.00087124 -1.3052 -0.00072808 557.8144729841168 65.591 0.13393 59.415 59.344 59.478 -6.1757 10 7 2 0 0 0 0.22149 1 42611 42611 10.074 0 1 9169900 + 19159 24060 13208 13444 22583 22583 0.06598004885699993 HIQNCRKWD 9 Unmodified _HIQNCRKWD_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5557250976562 3 400.529463 1198.56656 -0.012773 -5.116E-06 0.30201 0.00012096 0.28923 0.00011585 400.52956916042257 39.61 0.25939 39.313 39.112 39.371 -0.29716 21 11 2 0 0 0 0.21021 1 20906 20906 7.609 0.57187 1 9576900 19160 445 13209 13445 22584 22584 -0.024780620798310338 HIQNYTLFF 9 Unmodified _HIQNYTLFF_ 0 0 0 REV__ENST00000372571.5_1_1:42654917-42655043:-|nuORF REV__ENST00000372571.5_1_1:42654917-42655043:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.8713684082031 3 394.869591 1181.58694 NaN NaN NaN NaN NaN NaN NaN 23.484 1 20.657 20.157 21.157 -2.8273 0 0 0 0.83329 1 12714 12714 2.086 0 1 + 19161 26117 13210 13446 22585 22585 0.0034143185159791756 HIQVSPAHNL 10 Unmodified _HIQVSPAHNL_ 0 0 0 REV__nc|ENSG00000171720|O15379-2|HDAC3 REV__nc|ENSG00000171720|O15379-2|HDAC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2979125976562 2 558.301447 1114.58834 0.50951 0.00028446 -2.8636 -0.0015987 -2.354 -0.0013143 558.3000059791402 59.369 0.2571 58.878 58.75 59.007 -0.49079 24 11 3 0 0 0 0.63399 1 32296 32296 9.3831 1.473 1 2702200 + 19162 29778 13211 13447 22586 22586 0.03563065940375054 HIRGKLRKKV 10 Unmodified _HIRGKLRKKV_ 0 0 0 ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX ENST00000465253.1_1_Y:22737757-22750047:+|nuORF ENST00000465253.1_1_Y:22737757-22750047:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1235.314331054688 1 1234.82187 1233.81459 0.7383 0.00091167 -1.3746 -0.0016974 -0.6363 -0.00078572 1235.8214062323784 69.376 0.090553 63.201 63.153 63.243 -6.1757 6 4 2 0 0 0 0.24007 1 45313 45313 0.45834 0 1 21214000 19163 8353 13212 13448 22587 22587 0.20703854570092517 HIRLHLFL 8 Unmodified _HIRLHLFL_ 0 0 0 REV__nc|ENSG00000185869|Q3KNS6-2|ZNF829 REV__nc|ENSG00000185869|Q3KNS6-2|ZNF829 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2191772460938 3 350.218666 1047.63417 1.5508 0.00054314 -0.38037 -0.00013321 1.1705 0.00040992 350.21859659928447 41.122 0.37498 36.514 36.311 36.686 -4.6079 31 23 2 0 0 0 0.77186 1 24626 24626 10.824 2.6684 1 11665000 + 19164 23528 13213 13449 22588 22588 0.1122575591327859 HIRLRLSKLR 10 Unmodified _HIRLRLSKLR_ 0 0 0 nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2 nc|ENSG00000104044|Q04671-3|OCA2 nc|ENSG00000104044|Q04671-3|OCA2 MSMS AL20221201_MKP_PDAC_01 4 431.2879333496094 3 431.285962 1290.83606 NaN NaN NaN NaN NaN NaN NaN 97.562 1 91.387 90.887 91.887 -6.1757 0 0 0 0.94046 1 64656 64656 6.1918 2.6048 1 19165 2171 13214 13450 22589 22589 0.20227239598830238 HIRQHQDF 8 Unmodified _HIRQHQDF_ 0 0 0 REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789 REV__nc|ENSG00000198556|Q5FWF6-2|ZNF789 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.7991333007812 2 540.770314 1079.52608 1.0772 0.00058253 3.4507 0.001866 4.5279 0.0024486 541.2726598096791 98 0.050629 91.824 91.781 91.831 -6.1757 4 2 2 0 0 0 8.7369 1 64952 64952 10.183 0.83596 1 4585600 + 19166 24025 13215 13451 22590 22590 -0.010506604079637327 HIRRHIALLST 11 Unmodified _HIRRHIALLST_ 0 0 0 REV__nc|ENSG00000197162|A8K8V0-2|ZNF785 REV__nc|ENSG00000197162|A8K8V0-2|ZNF785 MSMS AL20221201_MKP_PDAC_01 4 439.6020812988281 3 439.601839 1315.78369 NaN NaN NaN NaN NaN NaN NaN 21.791 1 19.056 18.556 19.556 -2.7348 0 0 0 0.93954 1 11692 11692 2.8433 0 1 + 19167 23902 13216 13452 22591 22591 0.13842656465203618 HIRVLGANLY 10 Unmodified _HIRVLGANLY_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8925476074219 3 385.892619 1154.65603 -0.15012 -5.7932E-05 -0.47441 -0.00018307 -0.62453 -0.000241 385.8924126268121 37.556 0.25285 37.573 37.438 37.691 0.01704 37 12 4 0 0 0 0.63399 1 19907 19907 8.4443 3.5473 1 18788000 19168 7326 13217 13453 22592 22592 0.08488515871181335 HIRVLGANLY 10 Unmodified _HIRVLGANLY_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8925170898438 3 385.892619 1154.65603 1.0777 0.00041589 0.16496 6.3657E-05 1.2427 0.00047955 385.89239019048836 42.192 0.4798 37.508 37.252 37.732 -4.6846 75 30 3 0 0 0 0.63399 1 25377 25377 5.4027 0.87384 1 51435000 19169 7326 13217 13453 22593 22593 0.08488515871181335 HISPIVKMKL 10 Unmodified _HISPIVKMKL_ 0 0 0 REV__ENST00000458572.1_1_22:36913352-36913451:-|nuORF REV__ENST00000458572.1_1_22:36913352-36913451:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.242431640625 3 389.242372 1164.70529 0.20729 8.0685E-05 -0.94183 -0.0003666 -0.73455 -0.00028592 389.242010436282 61.148 0.91361 61.104 60.726 61.64 -0.04351 102 45 3 0 0 0 0.67033 1 33640 33640 3.3196 0.24738 1 8856200 + 19170 27279 13218 13454 22594 22594 0.12952087835788006 HISPTLSY 8 Unmodified _HISPTLSY_ 0 0 0 REV__ENST00000468564.6_1_22:44582182-44582449:+|nuORF REV__ENST00000468564.6_1_22:44582182-44582449:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 459.2400817871094 2 459.239993 916.465432 NaN NaN NaN NaN NaN NaN NaN 19.539 1 16.883 16.383 17.383 -2.6564 0 0 0 0.90769 1 10359 10359 18.135 0 1 + 19171 27456 13219 13455 22595 22595 0.0038580948911430824 HITAGAPH 8 Unmodified _HITAGAPH_ 0 0 0 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 MSMS AL20221201_MKP_PDAC_01 4 402.2126770019531 2 402.211569 802.408586 NaN NaN NaN NaN NaN NaN NaN 31.825 1 28.129 27.629 28.629 -3.6958 0 0 0 0.95201 1 18059 18059 10.183 4.423 1 + 19172 17343 13220 13456 22596 22596 -0.0005219327675831664 HITDQVHLY 9 Unmodified _HITDQVHLY_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.28759765625 2 563.288005 1124.56146 0.26734 0.00015059 -0.52243 -0.00029428 -0.25509 -0.00014369 563.2882278084489 37.713 0.24132 37.713 37.604 37.846 0 26 11 3 0 0 0 0.020316 1 20110 20110 69.105 15.272 1 3484400 19173 7973 13221 13457 22597 22597 0.004159573291872221 HITDQVHLY 9 Unmodified _HITDQVHLY_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2883911132812 2 563.288005 1124.56146 0.96933 0.00054601 0.50102 0.00028222 1.4703 0.00082823 563.2880908135186 42.993 0.30258 38.309 38.142 38.444 -4.6846 27 19 2 0 0 0 0.012586 1 25999 25999 79.596 47.291 1 9759200 19174 7973 13221 13457 22598 22598 0.004159573291872221 HITKQGFRWV 10 Unmodified _HITKQGFRWV_ 0 0 0 REV__ENST00000356352.6_1_10:11994184-11997256:-|nuORF REV__ENST00000356352.6_1_10:11994184-11997256:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.5724182128906 3 424.571768 1270.69348 1.3214 0.00056104 0.085768 3.6415E-05 1.4072 0.00059746 424.5717222585912 91.709 0.57798 85.534 85.312 85.89 -6.1757 45 32 2 0 0 0 0.24007 1 60763 60763 0.69767 0.69767 1 24916000 + 19175 25823 13222 13458 22599 22599 0.06895607136812032 HITRTIEEM 9 Unmodified _HITRTIEEM_ 0 0 0 REV__nc|ENSG00000172673|Q8N1K5-3|THEMIS REV__nc|ENSG00000172673|Q8N1K5-3|THEMIS MSMS AL20221201_MKP_PDAC_01 4 377.2203369140625 3 377.193858 1128.55974 NaN NaN NaN NaN NaN NaN NaN 97.192 1 91.017 90.517 91.517 -6.1757 0 0 0 0.56093 1 64414 64414 13.615 7.8314 1 + 19176 22666 13223 13459 22600 22600 0.0006058024891899549 HITTTTFI 8 Unmodified _HITTTTFI_ 0 0 0 nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2 nc|ENSG00000152208|O43424-2|GRID2 nc|ENSG00000152208|O43424-2|GRID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.5120239257812 1 933.504009 932.496732 0.72337 0.00067527 0.16715 0.00015604 0.89053 0.00083131 933.5040832815087 49.518 0.27687 49.518 49.352 49.629 0 25 11 3 0 0 0 0.80722 1 27307 27307 2.3027 0.24298 1 4424400 19177 6168 13224 13460 22601 22601 0.027783825231722403 HIVDGMFIF 9 Unmodified _HIVDGMFIF_ 0 0 0 REV__ENST00000461225.5_1_17:37235749-37309234:-|nuORF REV__ENST00000461225.5_1_17:37235749-37309234:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7476196289062 2 539.773145 1077.53174 -0.38804 -0.00020945 0.7863 0.00042442 0.39826 0.00021497 539.7733292325388 32.74 0.21532 32.581 32.407 32.622 -0.15918 14 8 2 0 0 0 0.18882 1 17061 17061 15.847 2.3393 1 905770 + 19178 21594 13225 13461 22602 22602 -0.003926979405150632 HIVELLETY 9 Unmodified _HIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7997436523438 2 558.800414 1115.58628 0.3416 0.00019089 -2.3634 -0.0013207 -2.0218 -0.0011298 558.7989422216631 62.375 0.31214 62.375 62.257 62.569 0 36 21 2 0 0 0 0.081537 1 34878 34878 42.095 32.747 1 8079400 19179 5814 13226 13462 22603 22603 0.03310592411912694 HIVELLETY 9 Unmodified _HIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7996215820312 2 558.800414 1115.58628 0.70639 0.00039473 -1.0278 -0.00057432 -0.32138 -0.00017959 558.7994725960302 62.864 0.3148 62.378 62.227 62.542 -0.48617 32 15 3 0 0 0 0.013472 1 34265 34265 70.716 47.567 1 9568000 19180 5814 13226 13462 22604 22604 0.03310592411912694 HIVELLETY 9 Unmodified _HIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8005981445312 2 558.800414 1115.58628 1.3191 0.0007371 -1.7111 -0.00095615 -0.39201 -0.00021906 558.8003680443702 89.17 1.4737 82.995 82.494 83.968 -6.1757 145 82 3 0 0 0 0.06187 2 58900 58900;59059 42.095 28.587 1 22758000 19181 5814 13226 13462 22605;22606 22605 0.03310592411912694 HIVFGASWSNF 11 Unmodified _HIVFGASWSNF_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7255249023438 3 422.208495 1263.60366 0.69713 0.00029433 0.14151 5.9747E-05 0.83864 0.00035408 422.2085364009255 57.038 0.18004 56.972 56.898 57.078 -0.066036 15 8 2 0 0 0 0.30356 1 31019 31019 2.8433 0.93691 1 4057800 + 19182 20568 13227 13463 22607 22607 -0.01760067262443954 HIVYVPSH 8 Unmodified _HIVYVPSH_ 0 0 0 ENSG00000004799|ENST00000005178|PDK4;ENST00000473796.1_1_7:95214955-95221973:-|nuORF ENSG00000004799|ENST00000005178|PDK4 ENSG00000004799|ENST00000005178|PDK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2542419433594 2 476.255977 950.497401 NaN NaN NaN NaN NaN NaN NaN 18.237 1 18.237 17.737 18.737 0 0 0 0 0.93587 1 9051 9051 13.508 2.684 1 19183 283 13228 13464 22608 22608 0.020172219628989296 HIWEYERI 8 Unmodified _HIWEYERI_ 0 0 0 REV__nc|ENSG00000173575|O14647-2|CHD2 REV__nc|ENSG00000173575|O14647-2|CHD2 MSMS AL20221201_MKP_PDAC_01 4 382.5293273925781 3 382.529458 1144.56654 NaN NaN NaN NaN NaN NaN NaN 23.114 1 20.335 19.835 20.835 -2.7784 0 0 0 0.9706 1 12486 12486 4.3292 0 1 + 19184 22739 13229 13465 22609 22609 4.261191793375474E-05 HIWRHAEL 8 Unmodified _HIWRHAEL_ 0 0 0 REV__nc|ENSG00000197162|A8K8V0-2|ZNF785 REV__nc|ENSG00000197162|A8K8V0-2|ZNF785 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2828369140625 2 531.2856 1060.55665 NaN NaN NaN NaN NaN NaN NaN 40.547 1 40.547 40.047 41.047 0 0 0 0 0.94749 1 21801 21801 11.114 0.29054 1 + 19185 23902 13230 13466 22610 22610 0.028791179770905728 HIYAVSTPM 9 Unmodified _HIYAVSTPM_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-6|TNIK REV__nc|ENSG00000154310|Q9UKE5-6|TNIK MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7548522949219 2 509.754953 1017.49535 0.35603 0.00018149 -0.57651 -0.00029388 -0.22048 -0.00011239 509.75350495459895 46.23 0.059387 41.275 41.255 41.315 -4.9549 5 3 2 0 0 0 0.12841 1 28536 28536 30.225 0 1 8005900 + 19186 21224 13231 13467 22611 22611 -0.01269574837226628 HIYKFEPKLVY 11 Unmodified _HIYKFEPKLVY_ 0 0 0 nc|ENSG00000240268|A6NHM9|MOXD2P nc|ENSG00000240268|A6NHM9|MOXD2P nc|ENSG00000240268|A6NHM9|MOXD2P MULTI-MSMS AL20221201_MKP_PDAC_01 4 718.8984985351562 2 718.900463 1435.78637 0.93449 0.00067181 -0.99319 -0.000714 -0.058695 -4.2196E-05 719.4030015564066 50.1 0.35142 44.561 44.424 44.775 -5.5391 48 22 3 0 0 0 0.5229 2 31341 31341;31487 15.248 3.0078 1 27530000 19187 16568 13232 13468 22612;22613 22612 0.0859106707951014 HIYKHETL 8 Unmodified _HIYKHETL_ 0 0 0 REV__ENSG00000152926|ENST00000282869|ZNF117 REV__ENSG00000152926|ENST00000282869|ZNF117 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7819213867188 2 520.779816 1039.54508 0.1944 0.00010124 1.9918 0.0010373 2.1862 0.0011385 520.7805873036369 75.023 0.28413 75.069 74.899 75.183 0.045959 21 13 2 0 0 0 0.65867 1 41339 41339 20.871 6.2895 1 2787400 + 19188 21140 13233 13469 22614 22614 0.026888761630971203 HIYTEPFI 8 Unmodified _HIYTEPFI_ 0 0 0 REV__ENSG00000147459|ENST00000276440|DOCK5 REV__ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2631530761719 2 510.263468 1018.51238 0.35615 0.00018173 -0.62293 -0.00031786 -0.26678 -0.00013613 510.26312899074634 82.708 0.41794 82.21 82.03 82.448 -0.49751 53 17 4 0 0 0 0.5953 1 45313 45313 26.341 1.6674 1 5623500 + 19189 20890 13234 13470 22615 22615 0.003866690402333006 HKAISFRG 8 Unmodified _HKAISFRG_ 0 0 0 ENSG00000182854|ENST00000332238|OR4F15 ENSG00000182854|ENST00000332238|OR4F15 ENSG00000182854|ENST00000332238|OR4F15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2637939453125 2 458.261594 914.508634 3.1018 0.0014214 0.80449 0.00036867 3.9063 0.0017901 458.26188719145557 97.183 1.7313 97.176 96.747 98.479 -0.0070114 178 64 4 0 0 0 0.80992 1 53785 53785 0.69038 0 1 238200000 19190 9093 13235 13471 22616 22616 0.04796044057036397 HKDEEEEDD 9 Unmodified _HKDEEEEDD_ 0 0 0 ENSG00000189269|ENST00000317749|DRICH1 ENSG00000189269|ENST00000317749|DRICH1 ENSG00000189269|ENST00000317749|DRICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2175598144531 3 382.479157 1144.41564 -0.6649 -0.00025431 0.23444 8.9669E-05 -0.43046 -0.00016464 382.4802307519838 34.307 0.26618 34.307 34.156 34.422 0 41 13 5 0 0 0 0.60485 1 17985 17985 1.0715 0.3738 1 6278300 19191 9738 13236 13472 22617 22617 -0.15079014768184607 HKDRFRGDL 9 Unmodified _HKDRFRGDL_ 0 0 0 ENST00000598485.6_2_19:41246882-41255486:-|nuORF;ENSG00000188493|ENST00000378313|ACTMAP ENST00000598485.6_2_19:41246882-41255486:-|nuORF ENST00000598485.6_2_19:41246882-41255486:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.3056030273438 2 572.304521 1142.59449 0.48515 0.00027766 2.0078 0.0011491 2.4929 0.0014267 572.3054937341246 100.7 0.088272 100.57 100.52 100.6 -0.13293 6 3 2 0 0 0 0.60664 1 54983 54983 0.45834 0 1 887210 19192 9663 13237 13473 22618 22618 0.028895841719076998 HKEEHEVAVLG 11 Unmodified _HKEEHEVAVLG_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.5515441894531 3 416.55081 1246.6306 NaN NaN NaN NaN NaN NaN NaN 21.668 1 21.668 21.168 22.168 0 0 0 0 0.93694 1 10981 10981 4.7159 3.2608 1 19193 9424 13238 13474 22619 22619 0.017149965580983917 HKEKHTHF 8 Unmodified _HKEKHTHF_ 0 0 0 ENST00000472487.5_1_1:59121465-59121591:-|nuORF ENST00000472487.5_1_1:59121465-59121591:-|nuORF ENST00000472487.5_1_1:59121465-59121591:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2738037109375 2 532.275232 1062.53591 NaN NaN NaN NaN NaN NaN NaN 29.65 1 29.65 29.15 30.15 0 0 0 0 0.95607 1 15367 15367 9.3474 0.75416 1 19194 13906 13239 13475 22620 22620 0.007145275973925891 HKETIFIL 8 Unmodified _HKETIFIL_ 0 0 0 REV__ENSG00000130935|ENST00000253247|NOL11 REV__ENSG00000130935|ENST00000253247|NOL11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2745666503906 2 500.794935 999.575317 0.30571 0.0001531 0.43745 0.00021907 0.74316 0.00037217 500.79497012348327 67.657 0.29326 67.174 67.053 67.346 -0.48218 25 12 3 0 0 0 8.7369 1 37022 37022 21.747 4.8044 1 961300 + 19195 19752 13240 13476 22621 22621 0.07551234828292763 HKGYSILYR 9 Unmodified _HKGYSILYR_ 0 0 0 REV__ENSG00000154822|ENST00000615277|PLCL2 REV__ENSG00000154822|ENST00000615277|PLCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5457763671875 3 379.545219 1135.61383 1.2629 0.00047933 -0.15606 -5.9231E-05 1.1068 0.0004201 379.545157347826 40.58 0.51555 36.051 35.824 36.339 -4.5294 56 31 2 0 0 0 0.45045 1 24374 24374 6.6304 3.0339 1 49157000 + 19196 21249 13241 13477 22622 22622 0.051445404628111646 HKKHQKKK 8 Unmodified _HKKHQKKK_ 0 0 0 REV__ENSG00000179083|ENST00000683942|FAM133A REV__ENSG00000179083|ENST00000683942|FAM133A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3362426757812 2 531.338167 1060.66178 NaN NaN NaN NaN NaN NaN NaN 101.37 1 101.33 100.83 101.83 -0.04216 0 0 0 0.97444 1 56314 56314 0.69038 0 1 + 19197 23084 13242 13478 22623 22623 0.13387659173508837 HKKKKAVL 8 Unmodified _HKKKKAVL_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE;ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-3|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.3264770507812 2 476.326737 950.63892 1.6004 0.00076232 -1.3913 -0.00066272 0.20909 9.9594E-05 476.32579946923187 104.34 0.17434 98.168 98.052 98.226 -6.1757 50 28 2 0 0 0 0.80992 1 69864 69864 0.69038 0 1 8317400 19198 2391 13243 13479 22624 22624 0.16162640056029431 HKKLYTGLP 9 Unmodified _HKKLYTGLP_ 0 0 0 nc|ENSG00000010244|O43670-3|ZNF207 nc|ENSG00000010244|O43670-3|ZNF207 nc|ENSG00000010244|O43670-3|ZNF207 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8789672851562 3 352.878198 1055.61277 0.59199 0.0002089 1.3613 0.00048038 1.9533 0.00068928 352.878627901801 46.252 0.77294 46.218 45.799 46.572 -0.033421 56 36 2 0 0 0 0.54444 1 24736 24736 2.7352 1.5419 1 5959600 19199 16017 13244 13480 22625 22625 0.08718326093890028 HKKQHELW 8 Unmodified _HKKQHELW_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MSMS AL20221201_MKP_PDAC_01 4 369.2019653320312 3 369.201564 1104.58286 NaN NaN NaN NaN NaN NaN NaN 21.328 1 18.594 18.094 19.094 -2.7348 0 0 0 0.93394 1 11411 11411 13.906 0 1 + 19200 20101 13245 13481 22626 22626 0.03475387148569098 HKLHKALC 8 Unmodified _HKLHKALC_ 0 0 0 REV__ENSG00000120440|ENST00000239587|TTLL2 REV__ENSG00000120440|ENST00000239587|TTLL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2734069824219 2 475.273647 948.532741 1.5796 0.00075073 0.39616 0.00018828 1.9757 0.00093902 475.2737246807947 105.26 0.12931 99.081 99.008 99.138 -6.1757 53 31 2 0 0 0 0.80676 1 70476 70476 2.5775 0 1 114510000 + 19201 19243 13246 13482 22627 22627 0.05641561219056257 HKLKKAPR 8 Unmodified _HKLKKAPR_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.3197937011719 2 489.321986 976.629418 NaN NaN NaN NaN NaN NaN NaN 103.99 1 103.94 103.44 104.44 -0.048737 0 0 0 0.97444 1 57741 57741 0.69038 0.69038 1 + 19202 22428 13247 13483 22628 22628 0.14016871770502348 HKLLKFTG 8 Unmodified _HKLLKFTG_ 0 0 0 REV__ENSG00000113396|ENST00000262462|SLC27A6 REV__ENSG00000113396|ENST00000262462|SLC27A6 MSMS AL20221201_MKP_PDAC_01 4 472.2908630371094 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 71.33 1 65.154 64.654 65.654 -6.1757 0 0 0 0.9489 1 46616 46616 10.824 0 1 + 19203 18865 13248 13484 22629 22629 0.0915067189371257 HKLLLQLMA 9 Unmodified _HKLLLQLMA_ 0 0 0 REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF REV__ENST00000370828.3_1_X:132445305-132458320:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.8286743164062 2 533.825712 1065.63687 NaN NaN NaN NaN NaN NaN NaN 109.55 1 103.38 102.88 103.88 -6.1757 0 0 0 0.85447 1 73158 73158 1.8442 1.0506 1 + 19204 26067 13249 13485 22630 22630 0.10667843255919252 HKLPDCSLRLY 11 Unmodified _HKLPDCSLRLY_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 672.80517578125 2 672.858272 1343.70199 1.3216 0.00088927 -2.9447 -0.0019814 -1.6231 -0.0010921 672.8566858632117 98.316 0.060432 92.14 92.102 92.163 -6.1757 5 3 2 0 0 0 0.28167 1 65182 65182 13.615 5.7047 1 6223600 19205 1361 13250 13486 22631 22631 0.04388792991107948 HKLRRNSLN 9 Unmodified _HKLRRNSLN_ 0 0 0 REV__ENST00000485583.1_1_7:100179936-100183723:-|nuORF REV__ENST00000485583.1_1_7:100179936-100183723:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5225830078125 3 379.891501 1136.65267 0.63234 0.00024022 1.3743 0.00052207 2.0066 0.00076229 379.8920328809294 14.842 0.10561 12.315 12.228 12.333 -2.5273 23 17 2 0 0 0 0.21822 1 7522 7522 2.4985 0 1 1004600 + 19206 17611 13251 13487 22632 22632 0.08981265817192252 HKMIILQLPP 10 Unmodified _HKMIILQLPP_ 0 0 0 REV__ENST00000438724.5_1_13:79918450-79918871:-|nuORF REV__ENST00000438724.5_1_13:79918450-79918871:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.243896484375 3 397.242372 1188.70529 NaN NaN NaN NaN NaN NaN NaN 104.96 1 98.785 98.285 99.285 -6.1757 0 0 0 0.9997 1 70268 70268 0.69767 0 1 + 19207 27056 13252 13488 22633 22633 0.11848087835778642 HKMKKKYL 8 Unmodified _HKMKKKYL_ 0 0 0 REV__nc|ENSG00000135899|Q9HB58|SP110 REV__nc|ENSG00000135899|Q9HB58|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3275146484375 2 538.325879 1074.63721 1.5461 0.0008323 1.3107 0.0007056 2.8568 0.0015379 538.3264147318213 92.503 0.66565 92.533 92.259 92.925 0.030197 103 25 5 0 0 0 0.80624 1 51346 51346 2.8892 0.82947 1 397650000 + 19208 20106 13253 13489 22634 22634 0.10287262975771228 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8446655273438 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 0.19767 1 -2.2843 -2.7843 -1.7843 -2.482 0 0 0 0.85798 1 109 109 0.23584 0.15249 1 + 19209 21665 13254 13490 22635 22635 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 397.3322143554688 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 0.42457 1 -2.0574 -2.5574 -1.5574 -2.482 0 0 0 0.85798 1 225 225 0.23584 0.095952 1 + 19210 21665 13254 13490 22636 22636 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8760681152344 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 5.8392 1 3.3572 2.8572 3.8572 -2.482 0 0 0 0.85798 1 2958 2958 0.23584 0.11298 1 + 19211 21665 13254 13490 22637 22637 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8778076171875 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 6.8091 1 4.3271 3.8271 4.8271 -2.482 0 0 0 0.85798 1 3440 3440 0.23584 0.11298 1 + 19212 21665 13254 13490 22638 22638 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8442993164062 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 6.8318 1 4.3498 3.8498 4.8498 -2.482 0 0 0 0.85798 1 3451 3451 0.23584 0.095952 1 + 19213 21665 13254 13490 22639 22639 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.84375 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 7.0038 1 4.5218 4.0218 5.0218 -2.482 0 0 0 0.85798 1 3539 3539 0.23584 0.11298 1 + 19214 21665 13254 13490 22640 22640 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8437194824219 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 7.1847 1 4.7028 4.2028 5.2028 -2.482 0 0 0 0.85798 1 3627 3627 0.23584 0.11298 1 + 19215 21665 13254 13490 22641 22641 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8435974121094 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 7.4324 1 4.9505 4.4505 5.4505 -2.482 0 0 0 0.85798 1 3750 3750 0.23584 0.095952 1 + 19216 21665 13254 13490 22642 22642 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 397.3314819335938 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 7.662 1 5.18 4.68 5.68 -2.482 0 0 0 0.85798 1 3868 3868 0.23584 0.095952 1 + 19217 21665 13254 13490 22643 22643 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8438415527344 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 8.0391 1 5.5572 5.0572 6.0572 -2.482 0 0 0 0.85798 1 4058 4058 0.23584 0 1 + 19218 21665 13254 13490 22644 22644 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8448181152344 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 8.3164 1 5.8344 5.3344 6.3344 -2.482 0 0 0 0.85798 1 4197 4197 0.23584 0.11298 1 + 19219 21665 13254 13490 22645 22645 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.84375 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 8.9645 1 6.4825 5.9825 6.9825 -2.482 0 0 0 0.85798 1 4520 4520 0.23584 0 1 + 19220 21665 13254 13490 22646 22646 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8442077636719 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 9.145 1 6.663 6.163 7.163 -2.482 0 0 0 0.85798 1 4612 4612 0.23584 0.11298 1 + 19221 21665 13254 13490 22647 22647 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8445434570312 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 9.9107 1 7.4287 6.9287 7.9287 -2.482 0 0 0 0.85798 1 4998 4998 0.23584 0.11298 1 + 19222 21665 13254 13490 22648 22648 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8445129394531 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 10.113 1 7.6308 7.1308 8.1308 -2.482 0 0 0 0.85798 1 5095 5095 0.23584 0 1 + 19223 21665 13254 13490 22649 22649 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8434143066406 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 10.497 1 8.0155 7.5155 8.5155 -2.482 0 0 0 0.85798 1 5292 5292 0.23584 0.11298 1 + 19224 21665 13254 13490 22650 22650 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8430480957031 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 11.051 1 8.5686 8.0686 9.0686 -2.482 0 0 0 0.85798 1 5563 5563 0.23584 0.076522 1 + 19225 21665 13254 13490 22651 22651 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8428039550781 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 11.515 1 9.0326 8.5326 9.5326 -2.482 0 0 0 0.85798 1 5797 5797 0.23584 0.11298 1 + 19226 21665 13254 13490 22652 22652 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.843505859375 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 11.724 1 9.2424 8.7424 9.7424 -2.482 0 0 0 0.85798 1 5901 5901 0.23584 0.11298 1 + 19227 21665 13254 13490 22653 22653 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8435668945312 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 12.524 1 10.042 9.5421 10.542 -2.482 0 0 0 0.85798 1 6337 6337 0.23584 0.11298 1 + 19228 21665 13254 13490 22654 22654 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8431396484375 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 12.696 1 10.214 9.7138 10.714 -2.482 0 0 0 0.85798 1 6428 6428 0.23584 0.11298 1 + 19229 21665 13254 13490 22655 22655 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8440551757812 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 13.386 1 10.904 10.404 11.404 -2.482 0 0 0 0.85798 1 6786 6786 0.23584 0.11298 1 + 19230 21665 13254 13490 22656 22656 -0.07927377813894054 HKMNYSDFF 9 Unmodified _HKMNYSDFF_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 396.8779296875 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 13.807 1 11.304 10.804 11.804 -2.5029 0 0 0 0.85798 1 6999 6999 0.23584 0.11298 1 + 19231 21665 13254 13490 22657 22657 -0.07927377813894054 HKNKLRRKY 9 Unmodified _HKNKLRRKY_ 0 0 0 REV__ENSG00000145283|ENST00000273905|SLC10A6 REV__ENSG00000145283|ENST00000273905|SLC10A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8811645507812 2 621.88073 1241.74691 1.3419 0.00083448 0.51741 0.00032177 1.8593 0.0011563 621.8810067936664 105.95 0.5117 99.774 99.547 100.06 -6.1757 89 65 2 0 0 0 0.59218 3 70874 70874;70980;71087 1.8442 0.6509 1 4017100 + 19232 20765 13255 13491 22658;22659;22660 22658 0.13570404639312983 HKNRSQIDAL 10 Unmodified _HKNRSQIDAL_ 0 0 0 REV__ENSG00000095627|ENST00000695399|TDRD1 REV__ENSG00000095627|ENST00000695399|TDRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.5509338378906 3 394.551033 1180.63127 -0.58512 -0.00023086 0.3057 0.00012061 -0.27942 -0.00011025 394.55118866903103 17.926 0.3098 17.926 17.803 18.113 0 153 44 5 0 0 0 0.57893 1 8919 8919 7.4771 0 1 18773000 + 19233 17947 13256 13492 22661 22661 0.048178359978237495 HKNRSQIDAL 10 Unmodified _HKNRSQIDAL_ 0 0 0 REV__ENSG00000095627|ENST00000695399|TDRD1 REV__ENSG00000095627|ENST00000695399|TDRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 394.551033 1180.63127 -0.58512 -0.00023086 0.3057 0.00012061 -0.27942 -0.00011025 394.55118866903103 17.926 0.3098 17.926 17.803 18.113 0 -0.025571 0.00015238 NaN 7.4771 153 44 5 NaN NaN NaN NaN 0 NaN NaN 0 18773000 + 19234 17947 13256 13492 0.048178359978237495 HKNRSQIDAL 10 Unmodified _HKNRSQIDAL_ 0 0 0 REV__ENSG00000095627|ENST00000695399|TDRD1 REV__ENSG00000095627|ENST00000695399|TDRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 394.551033 1180.63127 -0.53442 -0.00021086 -0.081725 -3.2245E-05 -0.61615 -0.0002431 394.5509914998407 17.972 0.13247 17.986 17.913 18.045 0.013866 0.034109 -0.00030619 NaN 7.4771 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4015800 + 19235 17947 13256 13492 0.048178359978237495 HKQAHVQYK 9 Unmodified _HKQAHVQYK_ 0 0 0 nc|ENSG00000221994|Q2M218-2|ZNF630;ENSG00000221994|ENST00000276054|ZNF630 nc|ENSG00000221994|Q2M218-2|ZNF630 nc|ENSG00000221994|Q2M218-2|ZNF630 MSMS AL20221201_MKP_PDAC_01 4 569.8110961914062 2 569.809439 1137.60433 NaN NaN NaN NaN NaN NaN NaN 86.619 1 80.443 79.943 80.943 -6.1757 0 0 0 0.73776 1 57102 57102 4.3292 0 1 19236 10568 13257 13493 22662 22662 0.04102772177270708 HKREKSFI 8 Unmodified _HKREKSFI_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8009643554688 2 522.801083 1043.58761 -0.26809 -0.00014016 0.14489 7.5747E-05 -0.1232 -6.441E-05 522.8014204643785 31.991 0.1821 32.021 31.969 32.151 0.030106 12 7 2 0 0 0 0.79669 1 16807 16807 8.5933 0.68312 1 1445400 19237 10798 13258 13494 22663 22663 0.0675627129132863 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.265380859375 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.3241 1 3.3241 2.8241 3.8241 0 0 0 0 0.97444 1 1615 1615 0.69038 0 1 19238 16607 13259 13495 22664 22664 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2653198242188 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.63187 1 0.55858 0.058579 1.0586 -0.073289 0 0 0 0.97444 1 319 319 0.69038 0 1 19239 16607 13259 13495 22665 22665 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2647399902344 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.7305 1 3.6585 3.1585 4.1585 -0.072029 0 0 0 0.97444 1 1839 1839 0.69038 0 1 19240 16607 13259 13495 22666 22666 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2655944824219 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.9731 1 3.9002 3.4002 4.4002 -0.07287 0 0 0 0.97444 1 1962 1962 0.69038 0 1 19241 16607 13259 13495 22667 22667 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2659606933594 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 4.5386 1 4.4657 3.9657 4.9657 -0.072869 0 0 0 0.97444 1 2243 2243 0.69038 0 1 19242 16607 13259 13495 22668 22668 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2648010253906 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 6.1663 1 6.0816 5.5816 6.5816 -0.08463 0 0 0 0.97444 1 3045 3045 0.69038 0 1 19243 16607 13259 13495 22669 22669 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2698669433594 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.089016 1 0.06695 -0.43305 0.56695 -0.022065 0 0 0 0.97444 1 47 47 0.69038 0 1 19244 16607 13259 13495 22670 22670 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2655944824219 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.26424 1 0.24217 -0.25783 0.74217 -0.022065 0 0 0 0.97444 1 141 141 0.69038 0 1 19245 16607 13259 13495 22671 22671 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2641906738281 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.59245 1 0.57182 0.071822 1.0718 -0.020623 0 0 0 0.97444 1 311 311 0.69038 0 1 19246 16607 13259 13495 22672 22672 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2647094726562 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.78442 1 0.76379 0.26379 1.2638 -0.020623 0 0 0 0.97444 1 404 404 0.69038 0 1 19247 16607 13259 13495 22673 22673 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2647094726562 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 0.96747 1 0.94684 0.44684 1.4468 -0.020623 0 0 0 0.97444 1 497 497 0.69038 0 1 19248 16607 13259 13495 22674 22674 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.264892578125 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 1.298 1 1.2774 0.7774 1.7774 -0.020623 0 0 0 0.97444 1 671 671 0.69038 0 1 19249 16607 13259 13495 22675 22675 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2645263671875 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 1.4731 1 1.4525 0.95246 1.9525 -0.020623 0 0 0 0.97444 1 764 764 0.69038 0 1 19250 16607 13259 13495 22676 22676 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2652893066406 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 2.2652 1 2.2481 1.7481 2.7481 -0.017019 0 0 0 0.97444 1 1157 1157 0.69038 0 1 19251 16607 13259 13495 22677 22677 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2646789550781 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.1235 1 3.1111 2.6111 3.6111 -0.012334 0 0 0 0.97444 1 1586 1586 0.69038 0 1 19252 16607 13259 13495 22678 22678 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2654418945312 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.2972 1 3.2849 2.7849 3.7849 -0.012334 0 0 0 0.97444 1 1674 1674 0.69038 0 1 19253 16607 13259 13495 22679 22679 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2651977539062 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.4814 1 3.4691 2.9691 3.9691 -0.012334 0 0 0 0.97444 1 1771 1771 0.69038 0 1 19254 16607 13259 13495 22680 22680 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2651672363281 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.7023 1 3.69 3.19 4.19 -0.012334 0 0 0 0.97444 1 1881 1881 0.69038 0 1 19255 16607 13259 13495 22681 22681 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2659912109375 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 3.9699 1 3.9636 3.4636 4.4636 -0.0062969 0 0 0 0.97444 1 2013 2013 0.69038 0 1 19256 16607 13259 13495 22682 22682 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2648010253906 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 4.7172 1 4.7109 4.2109 5.2109 -0.0062971 0 0 0 0.97444 1 2382 2382 0.69038 0 1 19257 16607 13259 13495 22683 22683 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2665100097656 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 5.43 1 5.4311 4.9311 5.9311 0.0010915 0 0 0 0.97444 1 2735 2735 0.69038 0 1 19258 16607 13259 13495 22684 22684 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2660827636719 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 10.162 1 10.179 9.6793 10.679 0.017581 0 0 0 0.97444 1 5031 5031 0.69038 0 1 19259 16607 13259 13495 22685 22685 0.04674562288573725 HKRGPVHT 8 Unmodified _HKRGPVHT_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2632446289062 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 11.02 1 11.035 10.535 11.535 0.015327 0 0 0 0.97444 1 5442 5442 0.69038 0 1 19260 16607 13259 13495 22686 22686 0.04674562288573725 HKRSPVAH 8 Unmodified _HKRSPVAH_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2648620605469 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 5.6197 1 5.6208 5.1208 6.1208 0.0010915 0 0 0 0.97444 1 2829 2829 0.69038 0 1 19261 7929 13260 13496 22687 22687 0.04674562288562356 HKRSPVAH 8 Unmodified _HKRSPVAH_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2649536132812 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 5.8137 1 5.8148 5.3148 6.3148 0.0010915 0 0 0 0.97444 1 2927 2927 0.69038 0 1 19262 7929 13260 13496 22688 22688 0.04674562288562356 HKRSPVAH 8 Unmodified _HKRSPVAH_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2645263671875 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 6.0527 1 6.0616 5.5616 6.5616 0.0089307 0 0 0 0.97444 1 3043 3043 2.5775 0.27475 1 19263 7929 13260 13496 22689 22689 0.04674562288562356 HKRSPVAH 8 Unmodified _HKRSPVAH_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2655029296875 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 6.5272 1 6.5361 6.0361 7.0361 0.0089307 0 0 0 0.97444 1 3268 3268 0.69038 0 1 19264 7929 13260 13496 22690 22690 0.04674562288562356 HKRSPVAH 8 Unmodified _HKRSPVAH_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2648620605469 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 7.6821 1 7.6973 7.1973 8.1973 0.015238 0 0 0 0.97444 1 3832 3832 0.69038 0 1 19265 7929 13260 13496 22691 22691 0.04674562288562356 HKRTSIRF 8 Unmodified _HKRTSIRF_ 0 0 0 REV__nc|ENSG00000105879|Q75N03-2|CBLL1 REV__nc|ENSG00000105879|Q75N03-2|CBLL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.80712890625 2 522.8067 1043.59885 NaN NaN NaN NaN NaN NaN NaN 13.594 1 13.601 13.101 14.101 0.0073986 0 0 0 0.97444 1 6705 6705 0.69038 0 1 + 19266 18470 13261 13497 22692 22692 0.07879093385486158 HKRYKIQKKVR 11 Unmodified _HKRYKIQKKVR_ 0 0 0 nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3;ENST00000462550.5_1_3:52720108-52721634:+|nuORF;ENST00000492349.5_1_3:52720087-52722217:+|nuORF;ENST00000468146.5_1_3:52720039-52723083:+|nuORF;ENST00000496254.5_1_3:52720087-52724795:+|nuORF nc|ENSG00000163938|Q9BVP2-2|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 742.4713745117188 2 742.470244 1482.92593 1.5142 0.0011242 -0.31791 -0.00023604 1.1963 0.0008882 742.4697201849451 104.94 0.17591 98.765 98.68 98.856 -6.1757 44 12 5 0 0 0 0.7453 1 70224 70224 0 0 1 305040000 19267 7100 13262 13498 22693 22693 0.20378869207365824 HKTERELPL 9 Unmodified _HKTERELPL_ 0 0 0 REV__ENST00000517928.1_1_8:62574468-62597059:-|nuORF REV__ENST00000517928.1_1_8:62574468-62597059:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8822326660156 3 374.880379 1121.61931 NaN NaN NaN NaN NaN NaN NaN 79.188 1 73.012 72.512 73.512 -6.1757 0 0 0 0.34649 1 51876 51876 16.566 0 1 + 19268 28235 13263 13499 22694 22694 0.06336219254626485 HKTQRALDDCK 11 Unmodified _HKTQRALDDCK_ 0 0 0 ENSG00000186479|ENST00000334025|RGS7BP ENSG00000186479|ENST00000334025|RGS7BP ENSG00000186479|ENST00000334025|RGS7BP MSMS AL20221201_MKP_PDAC_01 4 657.8304443359375 2 657.832785 1313.65102 NaN NaN NaN NaN NaN NaN NaN 54.851 1 48.986 48.486 49.486 -5.8653 0 0 0 0.90364 1 34843 34843 7.1017 0.37856 1 19269 9479 13264 13500 22695 22695 0.0067384394624241395 HKTTKSTQ 8 Unmodified _HKTTKSTQ_ 0 0 0 ENSG00000169131|ENST00000335815|ZNF354A ENSG00000169131|ENST00000335815|ZNF354A ENSG00000169131|ENST00000335815|ZNF354A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.752685546875 2 465.753798 929.493044 NaN NaN NaN NaN NaN NaN NaN 1.5462 1 1.5462 1.0462 2.0462 0 0 0 0 0.97444 1 758 758 0.69038 0 1 19270 7838 13265 13501 22696 22696 0.025477127493331864 HKVKLFRQA 9 Unmodified _HKVKLFRQA_ 0 0 0 REV__ENST00000261427.9_1_4:39782040-39782253:+|nuORF REV__ENST00000261427.9_1_4:39782040-39782253:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2578430175781 3 376.232975 1125.6771 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.4 102.9 103.9 -0.047928 0 0 0 0.86004 1 57453 57453 0.26902 0 1 + 19271 24986 13266 13502 22697 22697 0.11928525970711235 HKVTQWPFSRL 11 Unmodified _HKVTQWPFSRL_ 0 0 0 REV__ENST00000486431.5_1_3:125635511-125647421:+|nuORF REV__ENST00000486431.5_1_3:125635511-125647421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.9261474609375 3 466.926211 1397.7568 0.7468 0.0003487 -1.1511 -0.00053747 -0.40428 -0.00018877 466.9257534813062 57.058 0.27888 57.058 56.877 57.156 0 33 11 4 0 0 0 0.73237 1 31690 31690 1.2148 0 1 3653400 + 19272 27805 13267 13503 22698 22698 0.07383547854033168 HKYFCCHHLL 10 Unmodified _HKYFCCHHLL_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.8070678710938 2 650.807528 1299.6005 NaN NaN NaN NaN NaN NaN NaN 80.397 1 80.397 79.897 80.897 0 0 0 0 1.0019 1 44642 44642 0.45834 0.057624 1 + 19273 19793 13268 13504 22699 22699 -0.037313569124535206 HKYFLQCSLS 10 Unmodified _HKYFLQCSLS_ 0 0 0 REV__ENST00000508798.5_1_4:99392646-99392703:-|nuORF REV__ENST00000508798.5_1_4:99392646-99392703:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2052001953125 3 409.205986 1224.59613 NaN NaN NaN NaN NaN NaN NaN 74.834 1 74.834 74.334 75.334 0 0 0 0 0.99091 1 41635 41635 0.69767 0 1 + 19274 28120 13269 13505 22700 22700 -0.007185428543607486 HKYHQPRHRK 10 Unmodified _HKYHQPRHRK_ 0 0 0 REV__ENSG00000180938|ENST00000319286|ZNF572 REV__ENSG00000180938|ENST00000319286|ZNF572 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 693.88671875 2 693.884336 1385.75412 NaN NaN NaN NaN NaN NaN NaN 100.02 1 99.988 99.488 100.49 -0.036301 0 0 0 0.99248 1 55556 55556 1.4819 0.28856 1 + 19275 23178 13270 13506 22701 22701 0.07667137239718613 HKYHQPRHRK 10 Unmodified _HKYHQPRHRK_ 0 0 0 REV__ENSG00000180938|ENST00000319286|ZNF572 REV__ENSG00000180938|ENST00000319286|ZNF572 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 693.88671875 2 693.884336 1385.75412 2.5423 0.0017641 0.6738 0.00046754 3.2161 0.0022316 693.8846610797593 99.985 0.10838 99.949 99.88 99.989 -0.036301 5 3 2 0 0 0 0.23991 1 55556 55556 1.4819 0.28856 1 2238900 + 19276 23178 13270 13506 22702 22702 0.07667137239718613 HKYKLKRMRWR 11 Unmodified _HKYKLKRMRWR_ 0 0 0 REV__ENSG00000136270|ENST00000258770|TBRG4 REV__ENSG00000136270|ENST00000258770|TBRG4 MSMS AL20221201_MKP_PDAC_01 4 801.4727783203125 2 801.469721 1600.92489 NaN NaN NaN NaN NaN NaN NaN 101.26 1 95.088 94.588 95.588 -6.1757 0 0 0 0.94307 1 67917 67917 0.30703 0.30703 1 + 19277 20153 13271 13507 22703 22703 0.14846331566832305 HLAEALHQA 9 Unmodified _HLAEALHQA_ 0 0 0 ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF ENSG00000177830|ENST00000323578|CHID1 ENSG00000177830|ENST00000323578|CHID1 MSMS AL20221201_MKP_PDAC_01 4 495.2617797851562 2 495.261791 988.509028 NaN NaN NaN NaN NaN NaN NaN 22.893 1 20.114 19.614 20.614 -2.7784 0 0 0 0.0084204 1 12348 12348 96.111 58.137 1 19278 8709 13272 13508 22704 22704 0.014314189862261628 HLAEARTKFS 10 Unmodified _HLAEARTKFS_ 0 0 0 REV__ENSG00000117000|ENST00000372771|RLF REV__ENSG00000117000|ENST00000372771|RLF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2115478515625 3 387.212128 1158.61456 0.0065559 2.5385E-06 -1.2344 -0.00047799 -1.2279 -0.00047545 387.21187676391344 38.867 0.45432 38.58 38.382 38.836 -0.28687 60 20 5 0 0 0 0.23922 1 20529 20529 3.8763 3.8763 1 30955000 + 19279 19079 13273 13509 22705 22705 0.04159335111853579 HLAELIAEL 9 Unmodified _HLAELIAEL_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-2|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7900390625 2 504.78985 1007.56515 0.70189 0.0003543 -0.22321 -0.00011267 0.47868 0.00024163 504.7896271927229 74.484 0.37521 74.484 74.318 74.693 0 28 16 2 0 0 0 0.14602 2 41424 41424;41519 28.487 12.64 1 2254000 19280 6324 13274 13510 22706;22707 22706 0.06166627103038991 HLAELIAEL 9 Unmodified _HLAELIAEL_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-2|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7901000976562 2 504.78985 1007.56515 0.28576 0.00014425 0.03431 1.7319E-05 0.32007 0.00016157 504.7896980866551 74.882 0.42578 74.406 74.23 74.656 -0.47653 41 17 3 0 0 0 0.038285 2 40952 40952;41058 50.855 21.641 1 3782700 19281 6324 13274 13510 22708;22709 22708 0.06166627103038991 HLAELIAEL 9 Unmodified _HLAELIAEL_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11;nc|ENSG00000154370|Q96F44-2|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 nc|ENSG00000154370|Q96F44-3|TRIM11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7894287109375 2 504.78985 1007.56515 0.015895 8.0238E-06 0.30134 0.00015212 0.31724 0.00016014 504.7897396285882 98.855 0.12566 92.68 92.615 92.74 -6.1757 15 9 2 0 0 0 0.0086179 1 65638 65638 89.427 25.19 1 66532000 19282 6324 13274 13510 22710 22710 0.06166627103038991 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7486572265625 2 477.748182 953.481811 -0.25271 -0.00012073 1.1048 0.00052779 0.85204 0.00040706 477.7482182786762 33.386 0.30408 33.386 33.13 33.434 0 29 15 4 0 0 0 0.023164 1 17482 17482 60.39 34.048 1 4167100 19283 3669 13275 13511 22711 22711 0.0032089065518903226 HLAEVSAEV 9 Unmodified _HLAEVSAEV_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7491149902344 2 477.748182 953.481811 0.4568 0.00021823 0.99304 0.00047443 1.4498 0.00069266 477.74863404206803 38.77 0.29291 34.32 34.152 34.445 -4.4509 23 18 2 0 0 0 0.016184 1 22865 22865 67.344 22.937 1 16644000 19284 3669 13275 13511 22712 22712 0.0032089065518903226 HLAEYLFYVG 10 Unmodified _HLAEYLFYVG_ 0 0 0 REV__ENSG00000035687|ENST00000366535|ADSS2 REV__ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.8719482421875 3 404.541363 1210.60226 -0.49898 -0.00020186 0.97261 0.00039346 0.47363 0.0001916 404.541703089595 20.274 0.18409 20.274 20.158 20.342 0 27 10 3 0 0 0 0.71276 1 10223 10223 1.7423 0 1 1555200 + 19285 17164 13276 13512 22713 22713 0.005382986487802555 HLAFRGFPA 9 Unmodified _HLAFRGFPA_ 0 0 0 ENST00000305596.7_1_16:30366026-30366614:-|nuORF ENST00000305596.7_1_16:30366026-30366614:-|nuORF ENST00000305596.7_1_16:30366026-30366614:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1015.886596679688 1 1015.54721 1014.53993 0.5581 0.00056678 0.0052527 5.3344E-06 0.56336 0.00057212 1016.5458982071164 47.074 0.093006 46.738 46.701 46.794 -0.33664 5 4 2 0 0 0 0.21242 1 25209 25209 5.2307 2.3415 1 1157000 19286 11618 13277 13513 22714 22714 0.033246170911411355 HLAHLWLKIC 10 Unmodified _HLAHLWLKIC_ 0 0 0 REV__ENSG00000169018|ENST00000306917|FEM1B REV__ENSG00000169018|ENST00000306917|FEM1B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.5685729980469 3 411.902349 1232.68522 1.048 0.00043167 0.42921 0.00017679 1.4772 0.00060846 411.90263173026216 92.356 0.72106 86.18 85.921 86.642 -6.1757 56 43 2 0 0 0 0.23117 1 61198 61198 10.151 4.7479 1 23964000 + 19287 22365 13278 13514 22715 22715 0.07818336895820721 HLAIFDFFTW 10 Unmodified _HLAIFDFFTW_ 0 0 0 ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B ENSG00000135312|ENST00000369947|HTR1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8848266601562 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 48.33 1 48.33 47.83 48.83 0 0 0 0 0.97044 1 26511 26511 3.8763 0.030424 1 19288 4685 13279 13515 22716 22716 -0.002097085972536661 HLAIKLEQV 9 Unmodified _HLAIKLEQV_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MSMS AL20221201_MKP_PDAC_01 4 525.8193969726562 2 525.818941 1049.62333 NaN NaN NaN NaN NaN NaN NaN 48.534 1 43.138 42.638 43.638 -5.3961 0 0 0 0.026638 1 30241 30241 70.332 34.205 1 19289 5664 13280 13516 22717 22717 0.10050308748327552 HLALAPHST 9 Unmodified _HLALAPHST_ 0 0 0 REV__ENST00000395290.6_1_11:47488999-47489110:-|nuORF REV__ENST00000395290.6_1_11:47488999-47489110:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.8081970214844 2 473.758884 945.503215 0.1159 5.4909E-05 3.5105 0.0016631 3.6264 0.001718 473.76011691471547 79.66 0.2515 79.715 79.625 79.876 0.054977 14 9 2 0 0 0 0.203 1 44007 44007 9.3474 2.9933 1 1314400 + 19290 26475 13281 13517 22718 22718 0.028283204745775947 HLALVQSYI 9 Unmodified _HLALVQSYI_ 0 0 0 REV__ENST00000498249.1_1_2:150061334-150071221:+|nuORF REV__ENST00000498249.1_1_2:150061334-150071221:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2973022460938 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 57.212 1 57.146 56.646 57.646 -0.066036 0 0 0 0.82015 1 31138 31138 5.2307 0 1 + 19291 27993 13282 13518 22719 22719 0.061543333399413314 HLANDNFIWI 10 Unmodified _HLANDNFIWI_ 0 0 0 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant;nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.880859375 3 414.880379 1241.61931 0.42197 0.00017507 0.78458 0.00032551 1.2066 0.00050058 414.88060350482834 53.388 0.26302 52.936 52.783 53.046 -0.45173 26 12 3 0 0 0 0.66569 1 28867 28867 3.5871 0.95582 1 1863300 19292 5365 13283 13519 22720 22720 0.008162192546024016 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.8021240234375 2 525.806365 1049.59818 0.51794 0.00027233 -1.1144 -0.00058598 -0.5965 -0.00031364 525.8057259145431 35.985 0.41179 35.985 35.755 36.167 0 47 20 3 0 0 0 0.012024 1 19017 19017 80.676 26.843 1 29741000 19293 4383 13284 13520 22721 22721 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8057861328125 2 525.806365 1049.59818 -0.57914 -0.00030452 -3.2427 -0.001705 -3.8218 -0.0020095 525.8044864528572 36.128 0.43185 35.878 35.615 36.046 -0.2497 51 19 4 0 0 0 0.010362 1 18933 18933 86.332 50.205 1 27043000 19294 4383 13284 13520 22722 22722 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8070068359375 2 525.806365 1049.59818 0.90221 0.00047439 0.059573 3.1324E-05 0.96178 0.00050571 525.8064827156611 41.108 0.55709 36.5 36.244 36.801 -4.6079 100 34 4 0 0 0 0.020676 2 24681 24554;24681 67.838 33.436 1 125260000 19295 4383 13284 13520 22723;22724 22724 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.873291015625 3 350.873336 1049.59818 1.5896 0.00055775 -0.4598 -0.00016133 1.1298 0.00039641 350.87308692347614 41.162 0.39202 36.554 36.294 36.686 -4.6079 42 24 2 0 0 0 0.11005 1 24593 24593 32.037 11.457 1 13739000 19296 4383 13284 13520 22725 22725 0.07536253945750104 HLANIVERV 9 Unmodified _HLANIVERV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 525.806365 1049.59818 -0.15568 -8.1855E-05 -3.38 -0.0017772 -3.5357 -0.0018591 525.8047000169258 35.758 0.16225 35.783 35.723 35.885 0.024971 -0.09901 -0.002028 NaN 86.332 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2341800 19297 4383 13284 13520 0.07536253945750104 HLAPESQCFL 10 Unmodified _HLAPESQCFL_ 0 0 0 ENST00000440612.5_1_2:27322516-27322639:-|nuORF ENST00000440612.5_1_2:27322516-27322639:-|nuORF ENST00000440612.5_1_2:27322516-27322639:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.2225952148438 3 382.186703 1143.53828 NaN NaN NaN NaN NaN NaN NaN 23.587 1 20.76 20.26 21.26 -2.8273 0 0 0 0.91954 1 12774 12774 7.1017 4.1065 1 19298 13387 13285 13521 22726 22726 -0.02774804779801343 HLARVVKIG 9 Unmodified _HLARVVKIG_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.3111877441406 2 496.821818 991.629084 1.0785 0.00053584 -1.3448 -0.00066811 -0.26623 -0.00013227 496.82085343993856 42.555 0.36363 37.871 37.678 38.041 -4.6846 44 24 2 0 0 0 0.19298 1 25605 25605 4.756 0 1 19857000 19299 3148 13286 13522 22727 22727 0.13293452050663745 HLASDPFFRH 10 Unmodified _HLASDPFFRH_ 0 0 0 ENSG00000142751|ENST00000374135|GPN2;ENST00000477418.2_1_1:27206170-27212721:-|nuORF ENSG00000142751|ENST00000374135|GPN2 ENSG00000142751|ENST00000374135|GPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5414428710938 3 409.540357 1225.59924 NaN NaN NaN NaN NaN NaN NaN 18.694 1 18.717 18.217 19.217 0.023106 0 0 0 0.99091 1 9391 9391 0.69767 0 1 19300 5446 13287 13523 22728 22728 -0.004535316853434779 HLASEKGSYE 10 Unmodified _HLASEKGSYE_ 0 0 0 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1800231933594 3 374.180494 1119.51965 -0.49971 -0.00018698 0.34324 0.00012843 -0.15647 -5.8549E-05 374.1805524849964 19.175 0.29352 19.175 19.032 19.326 0 35 18 3 0 0 0 0.67755 1 9564 9564 5.4027 2.3304 1 3281500 19301 10136 13288 13524 22729 22729 -0.03532643149969772 HLAVLWASPL 10 Unmodified _HLAVLWASPL_ 0 0 0 ENST00000315150.9_1_3:128807140-128807500:-|nuORF ENST00000315150.9_1_3:128807140-128807500:-|nuORF ENST00000315150.9_1_3:128807140-128807500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5502014160156 3 369.550082 1105.62842 -0.37371 -0.0001381 0.20145 7.4446E-05 -0.17226 -6.3659E-05 369.55009402815074 53.596 0.94033 53.532 53.402 54.342 -0.063419 139 53 4 0 0 0 0.68719 1 29251 29251 2.086 0 1 556720000 19302 11727 13289 13525 22730 22730 0.07982612610931028 HLAVLWASPL 10 Unmodified _HLAVLWASPL_ 0 0 0 ENST00000315150.9_1_3:128807140-128807500:-|nuORF ENST00000315150.9_1_3:128807140-128807500:-|nuORF ENST00000315150.9_1_3:128807140-128807500:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5502319335938 3 369.550082 1105.62842 1.5551 0.00057468 -0.19114 -7.0636E-05 1.3639 0.00050404 369.54996771755793 80.293 1.388 74.118 73.073 74.462 -6.1757 282 81 4 0 0 0 0.65502 1 52046 52046 4.1895 0 1 438630000 19303 11727 13289 13525 22731 22731 0.07982612610931028 HLCEASNYSLF 11 Unmodified _HLCEASNYSLF_ 0 0 0 REV__ENSG00000284484|ENST00000640173|CPHXL2 REV__ENSG00000284484|ENST00000640173|CPHXL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.2909545898438 2 642.289888 1282.56522 1.2663 0.00081335 1.5023 0.00096494 2.7687 0.0017783 642.2902344462547 64.251 0.51563 58.075 57.765 58.28 -6.1757 63 26 3 0 0 0 0.46578 1 41485 41485 18.146 1.0335 1 19817000 + 19304 24698 13290 13526 22732 22732 -0.06475740959263021 HLCEHIWTL 9 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))EHIWTL_ HLC(1)EHIWTL HLC(150)EHIWTL 0 1 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1;ENST00000508709.1_1_5:145508626-145509697:-|nuORF ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7980346679688 2 604.797683 1207.58081 0.72164 0.00043645 -0.22816 -0.00013799 0.49348 0.00029845 604.7978953821992 89.061 0.53419 82.886 82.685 83.22 -6.1757 62 29 3 0 0 0 0.00032477 3 58776 58683;58776;58910 147.83 111.7 1 33864000 19305 4530 13291 13527 22733;22734;22735 22734 468 -0.014674096515818746 HLCPHKIYL 9 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))PHKIYL_ HLC(1)PHKIYL HLC(42)PHKIYL 0 1 0 nc|ENSG00000124256|Q9H171-2|ZBP1 nc|ENSG00000124256|Q9H171-2|ZBP1 nc|ENSG00000124256|Q9H171-2|ZBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2145385742188 3 394.214704 1179.62228 1.5947 0.00062864 -0.34888 -0.00013753 1.2458 0.00049111 394.2144156450662 33.969 0.39415 29.984 29.805 30.199 -3.9853 53 21 3 0 0 0 0.06294 1 19623 19623 41.84 27.434 1 17767000 19306 16169 13292 13528 22736 22736 1014 0.03965771107755245 HLCSLKVHL 9 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))SLKVHL_ HLC(1)SLKVHL HLC(56)SLKVHL 0 1 0 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5440368652344 3 369.542821 1105.60663 1.4822 0.00054773 0.95144 0.0003516 2.4336 0.00089933 369.5433170572988 39.309 0.33949 34.858 34.675 35.014 -4.4509 48 20 3 0 0 0 0.029718 1 23293 23293 55.503 44.008 1 24380000 19307 794 13293 13529 22737 22737 67 0.058054845907236086 HLCSLKVHL 9 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))SLKVHL_ HLC(1)SLKVHL HLC(87)SLKVHL 0 1 0 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.8773193359375 3 369.542821 1105.60663 1.164 0.00043013 0.067561 2.4967E-05 1.2315 0.0004551 369.5428234696505 77.409 0.49741 71.234 71.021 71.518 -6.1757 37 28 2 0 0 0 0.013733 1 50578 50578 87.258 60.99 1 13154000 19308 794 13293 13529 22738 22738 67 0.058054845907236086 HLCTCHFCDKR 11 Unmodified _HLCTCHFCDKR_ 0 0 0 REV__nc|ENSG00000215183|Q1L6U9|MSMP REV__nc|ENSG00000215183|Q1L6U9|MSMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8668212890625 3 454.866982 1361.57912 NaN NaN NaN NaN NaN NaN NaN 85.639 1 85.639 85.139 86.139 0 0 0 0 0.94307 1 47454 47454 0.08335 0 1 + 19309 29940 13294 13530 22739 22739 -0.0872111000348923 HLCTVQFLI 9 Carbamidomethyl (C) _HLC(Carbamidomethyl (C))TVQFLI_ HLC(1)TVQFLI HLC(75)TVQFLI 0 1 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MSMS AL20221201_MKP_PDAC_01 4 565.8067016601562 2 565.804977 1129.5954 NaN NaN NaN NaN NaN NaN NaN 96.73 1 90.554 90.054 91.054 -6.1757 0 0 0 0.022863 1 64104 64104 74.929 23.299 1 19310 4333 13295 13531 22740 22740 437 0.035786624965794545 HLCYQFLQGK 10 Unmodified _HLCYQFLQGK_ 0 0 0 ENSG00000172817|ENST00000310193|CYP7B1 ENSG00000172817|ENST00000310193|CYP7B1 ENSG00000172817|ENST00000310193|CYP7B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8138427734375 2 618.813333 1235.61211 -0.19077 -0.00011805 0.25311 0.00015663 0.062339 3.8576E-05 618.8136311490965 33.534 0.18433 33.534 33.415 33.6 0 42 22 2 0 0 0 0.24625 1 17569 17569 30.637 0 1 26882000 19311 8258 13296 13532 22741 22741 0.003731633825282188 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.3128662109375 2 512.313492 1022.61243 0.10671 5.4667E-05 -0.6804 -0.00034858 -0.57369 -0.00029391 512.3132436189945 57.046 0.34494 56.561 56.369 56.714 -0.48554 33 15 3 0 0 0 0.009483 1 30975 30975 81.89 33.544 1 8453500 19312 16031 13297 13533 22742 22742 0.10202906374036047 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.314208984375 2 512.313492 1022.61243 0.62319 0.00031927 0.040348 2.0671E-05 0.66354 0.00033994 512.3135944921894 56.666 0.22216 56.598 56.497 56.72 -0.068741 20 10 3 0 0 0 0.031062 1 30875 30875 54.774 33.027 1 3418000 19313 16031 13297 13533 22743 22743 0.10202906374036047 HLDATKLLL 9 Unmodified _HLDATKLLL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.3140258789062 2 512.313492 1022.61243 1.1187 0.00057312 0.11665 5.9762E-05 1.2353 0.00063288 512.31347534195 88.273 0.50424 82.097 81.869 82.373 -6.1757 44 27 2 0 0 0 0.0086209 1 58150 58150 89.401 34.627 1 17360000 19314 16031 13297 13533 22744 22744 0.10202906374036047 HLDDNEVWI 9 Unmodified _HLDDNEVWI_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2730712890625 2 570.769645 1139.52474 0.52828 0.00030153 0.26931 0.00015372 0.79759 0.00045524 570.7694378684351 67.426 0.31149 67.426 67.271 67.583 0 30 13 3 0 0 0 0.53666 1 37571 37571 5.2307 5.2307 1 2428700 19315 1966 13298 13534 22745 22745 -0.03944339287386356 HLDGSHFSGP 10 Unmodified _HLDGSHFSGP_ 0 0 0 REV__ENST00000356082.8_1_1:209801525-209803143:-|nuORF REV__ENST00000356082.8_1_1:209801525-209803143:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.7619018554688 2 527.241055 1052.46756 0.85417 0.00045036 0.44869 0.00023657 1.3029 0.00068692 527.241164060093 75.36 0.46941 69.185 68.906 69.376 -6.1757 44 25 2 0 0 0 0.23117 1 49191 49191 11.64 3.047 1 16202000 + 19316 25820 13299 13535 22746 22746 -0.05657761773113634 HLDHALLY 8 Unmodified _HLDHALLY_ 0 0 0 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2;ENST00000462455.1_1_1:16011053-16044472:+|nuORF nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20221201_MKP_PDAC_01 4 491.2643127441406 2 491.261259 980.507966 NaN NaN NaN NaN NaN NaN NaN 77.416 1 71.241 70.741 71.741 -6.1757 0 0 0 0.9249 1 50639 50639 15.768 2.2603 1 19317 3256 13300 13536 22747 22747 0.016932046173337767 HLDKDERTVY 10 Unmodified _HLDKDERTVY_ 0 0 0 REV__ENSG00000107960|ENST00000224950|STN1 REV__ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8200073242188 2 638.320034 1274.62551 -0.23324 -0.00014888 -0.86418 -0.00055162 -1.0974 -0.0007005 638.3204049019722 48.306 0.24329 48.306 48.17 48.413 0 20 11 3 0 0 0 0.60623 1 26522 26522 10.824 1.4408 1 4037100 + 19318 18589 13301 13537 22748 22748 -0.0008130730452649004 HLDKHKEL 8 Unmodified _HLDKHKEL_ 0 0 0 REV__NAA25|p.K39E|1|0.04|ENSG00000111300|chr12:112093080-112093080|T/C|missense_variant REV__NAA25|p.K39E|1|0.04|ENSG00000111300|chr12:112093080-112093080|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2856750488281 2 510.285266 1018.55598 -0.1832 -9.3486E-05 0.076228 3.8898E-05 -0.10698 -5.4588E-05 510.2855090940315 25.166 0.32083 25.166 25.005 25.326 0 28 17 2 0 0 0 0.77186 1 12842 12842 10.824 0 1 1476500 + 19319 29476 13302 13538 22749 22749 0.047442785373846164 HLDKHKEL 8 Unmodified _HLDKHKEL_ 0 0 0 REV__NAA25|p.K39E|1|0.04|ENSG00000111300|chr12:112093080-112093080|T/C|missense_variant REV__NAA25|p.K39E|1|0.04|ENSG00000111300|chr12:112093080-112093080|T/C|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2628784179688 2 510.285266 1018.55598 -0.1832 -9.3486E-05 0.076228 3.8898E-05 -0.10698 -5.4588E-05 510.2855090940315 25.166 0.32083 25.166 25.005 25.326 0 28 17 2 0 0 0 8.7369 1 12811 12811 10.824 0 1 1476500 + 19320 29476 13302 13538 22750 22750 0.047442785373846164 HLDMSIFEL 9 Unmodified _HLDMSIFEL_ 0 0 0 REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.771484375 2 552.773342 1103.53213 NaN NaN NaN NaN NaN NaN NaN 54.527 1 54.06 53.56 54.56 -0.46664 0 0 0 0.50124 1 29551 29551 15.847 2.3393 1 + 19321 29201 13303 13539 22751 22751 -0.015493230112952006 HLDNGPYYHI 10 Unmodified _HLDNGPYYHI_ 0 0 0 REV__nc|ENSG00000173559|Q96AH0-3|NABP1 REV__nc|ENSG00000173559|Q96AH0-3|NABP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.2686157226562 2 614.790912 1227.56727 0.5103 0.00031373 1.3973 0.00085908 1.9076 0.0011728 614.791982211691 72.144 2.832 72.183 71.954 74.786 0.039024 262 132 4 0 0 0 0.23821 1 40984 40984 4.3292 0.73274 1 2136999999.9999998 + 19322 29789 13304 13540 22752 22752 -0.03740944159130777 HLDPGPIYM 9 Oxidation (M) _HLDPGPIYM(Oxidation (M))_ HLDPGPIYM(1) HLDPGPIYM(48) 0 0 1 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7531127929688 2 529.75241 1057.49027 0.49496 0.00026221 0.58885 0.00031194 1.0838 0.00057415 529.7531937087687 37.132 0.3811 37.132 36.857 37.238 0 47 18 3 0 0 0 0.042911 1 19680 19680 48.346 20.173 1 5465000 19323 3206 13305 13541 22753 22753 570 -0.036178786998334544 HLDPNSGRCF 10 Unmodified _HLDPNSGRCF_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9;ENST00000547216.1_1_12:57871100-57871594:-|nuORF;ENST00000551000.1_1_12:57871100-57871616:-|nuORF;ENST00000546200.5_1_12:57870467-57871594:-|nuORF;ENST00000552420.5_1_12:57870791-57873587:-|nuORF;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MSMS AL20221201_MKP_PDAC_01 4 382.5092468261719 3 382.510069 1144.50838 NaN NaN NaN NaN NaN NaN NaN 79.754 1 73.578 73.078 74.078 -6.1757 0 0 0 0.92825 1 52285 52285 3.5871 0 1 19324 3696 13306 13542 22754 22754 -0.05809743725126282 HLDQPPLLSY 10 Unmodified _HLDQPPLLSY_ 0 0 0 REV__nc|ENSG00000197479|Q9Y5F2-2|PCDHB11 REV__nc|ENSG00000197479|Q9Y5F2-2|PCDHB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.82080078125 2 591.811313 1181.60807 0.084427 4.9965E-05 0.98686 0.00058404 1.0713 0.000634 591.8116301375647 51.195 0.39217 50.782 50.557 50.949 -0.41351 60 19 4 0 0 0 0.56348 1 27508 27508 13.042 0.80181 1 25066000 + 19325 23931 13307 13543 22755 22755 0.024533971604796534 HLDRDQPY 8 Unmodified _HLDRDQPY_ 0 0 0 ENSG00000106689|ENST00000373615|LHX2 ENSG00000106689|ENST00000373615|LHX2 ENSG00000106689|ENST00000373615|LHX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7543334960938 2 522.24888 1042.48321 -0.26626 -0.00013905 -0.30294 -0.00015821 -0.5692 -0.00029726 522.2478655813163 34.454 0.34502 34.454 34.269 34.614 0 41 17 3 0 0 0 0.67481 1 18102 18102 19.439 4.6007 1 8097100 19326 2453 13308 13544 22756 22756 -0.03633475256037855 HLDRPVFL 8 Unmodified _HLDRPVFL_ 0 0 0 ENSG00000134371|ENST00000367435|CDC73 ENSG00000134371|ENST00000367435|CDC73 ENSG00000134371|ENST00000367435|CDC73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7840881347656 2 498.784902 995.55525 0.43824 0.00021859 -0.74108 -0.00036964 -0.30284 -0.00015105 498.7845403863733 48.047 0.27572 47.694 47.555 47.831 -0.3526 19 13 2 0 0 0 0.14054 1 25749 25749 88.904 35.328 1 4695400 19327 4602 13309 13545 22757 22757 0.05729483888330833 HLDYHITVQNM 11 Unmodified _HLDYHITVQNM_ 0 0 0 ENST00000402768.1_1_6:139935577-139935790:-|nuORF ENST00000402768.1_1_6:139935577-139935790:-|nuORF ENST00000402768.1_1_6:139935577-139935790:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.5560302734375 3 457.555566 1369.64487 0.70138 0.00032092 0.62128 0.00028427 1.3227 0.00060519 457.5558706776804 31.42 0.35259 27.724 27.555 27.908 -3.6958 41 18 3 0 0 0 0.54321 1 17738 17738 14.218 3.9029 1 74373000 19328 12895 13310 13546 22758 22758 -0.025166742852889 HLEDMEPI 8 Unmodified _HLEDMEPI_ 0 0 0 REV__ENST00000551271.5_1_14:105884344-105884518:-|nuORF REV__ENST00000551271.5_1_14:105884344-105884518:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.2300720214844 2 492.228768 982.442982 NaN NaN NaN NaN NaN NaN NaN 45.615 1 40.66 40.16 41.16 -4.9549 0 0 0 0.93066 1 28035 28035 14.582 3.4672 1 + 19329 28713 13311 13547 22759 22759 -0.04894157970829838 HLEILIQRIRW 11 Unmodified _HLEILIQRIRW_ 0 0 0 REV__ENST00000523206.5_1_8:95850795-95884149:+|nuORF REV__ENST00000523206.5_1_8:95850795-95884149:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.9663696289062 3 492.964777 1475.8725 NaN NaN NaN NaN NaN NaN NaN 109.04 1 102.86 102.36 103.36 -6.1757 0 0 0 0.94338 1 72843 72843 0.08335 0 1 + 19330 21963 13312 13548 22760 22760 0.1536007170486755 HLEMIPLI 8 Unmodified _HLEMIPLI_ 0 0 0 ENST00000580498.5_1_17:57287412-57290261:+|nuORF ENST00000580498.5_1_17:57287412-57290261:+|nuORF ENST00000580498.5_1_17:57287412-57290261:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 483.2812194824219 2 483.278063 964.541574 NaN NaN NaN NaN NaN NaN NaN 56.854 1 50.877 50.377 51.377 -5.9769 0 0 0 0.9249 1 36312 36312 15.768 1.1865 1 19331 15559 13313 13549 22761 22761 0.05788490064878715 HLESIYSNF 9 Unmodified _HLESIYSNF_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2667236328125 2 555.266739 1108.51892 NaN NaN NaN NaN NaN NaN NaN 49.776 1 49.384 48.884 49.884 -0.3923 0 0 0 0.46757 1 26778 26778 16.942 6.8684 1 19332 7922 13314 13550 22762 22762 -0.030994377990509747 HLETCQYTME 10 Unmodified _HLETCQYTME_ 0 0 0 ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB ENSG00000198963|ENST00000376896|RORB ENSG00000198963|ENST00000376896|RORB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8417663574219 3 418.842496 1253.50566 -0.60087 -0.00025167 0.54043 0.00022636 -0.060439 -2.5314E-05 418.8426478543401 33.213 0.25599 33.213 33.109 33.365 0 26 12 3 0 0 0 0.69385 1 17418 17418 3.5871 0 1 2020200 19333 10215 13315 13551 22763 22763 -0.11095379964967833 HLETLKFL 8 Unmodified _HLETLKFL_ 0 0 0 REV__ENSG00000162951|ENST00000295057|LRRTM1 REV__ENSG00000162951|ENST00000295057|LRRTM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.7679443359375 2 500.794935 999.575317 0.87913 0.00044026 -2.0454 -0.0010243 -1.1663 -0.00058407 500.7942513921497 56.449 0.2233 50.473 50.338 50.561 -5.9769 21 12 2 0 0 0 8.7369 1 35934 35934 26.341 1.6674 1 9078700 + 19334 21710 13316 13552 22764 22764 0.07551234828292763 HLEVTELLL 9 Unmodified _HLEVTELLL_ 0 0 0 nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3;nc|ENSG00000069018|Q9HCX4-2|TRPC7;nc|ENSG00000069018|Q9HCX4-3|TRPC7;ENSG00000069018|ENST00000513104|TRPC7 nc|ENSG00000138741|Q13507-3|TRPC3 nc|ENSG00000138741|Q13507-3|TRPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8101806640625 2 533.810782 1065.60701 0.52406 0.00027975 0.24888 0.00013286 0.77294 0.0004126 533.8108367768745 67.695 0.44515 67.213 67.007 67.453 -0.48219 60 19 4 0 0 0 0.032796 1 36936 36936 70.716 7.1527 1 19990000 19335 5094 13317 13553 22765 22765 0.07683182791583931 HLEWEYQF 8 Unmodified _HLEWEYQF_ 0 0 0 ENSG00000172071|ENST00000303236|EIF2AK3;EIF2AK3|p.G327E|1|0.07|ENSG00000172071|chr2:88590840-88590840|C/T|missense_variant ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2598266601562 2 576.261456 1150.50836 0.33702 0.00019421 -0.36028 -0.00020761 -0.023258 -1.3403E-05 576.261169523256 68.911 0.51764 68.431 68.223 68.74 -0.48071 36 22 2 0 0 0 0.67481 1 37690 37690 19.439 2.4967 1 3015300 19336 8180 13318 13554 22766 22766 -0.06087420453491177 HLEWEYQF 8 Unmodified _HLEWEYQF_ 0 0 0 ENSG00000172071|ENST00000303236|EIF2AK3;EIF2AK3|p.G327E|1|0.07|ENSG00000172071|chr2:88590840-88590840|C/T|missense_variant ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2621459960938 2 576.261456 1150.50836 0.8505 0.00049011 1.3121 0.00075613 2.1626 0.0012462 576.2623098398419 75.545 0.55078 69.369 69.102 69.652 -6.1757 76 29 3 0 0 0 0.67481 1 49319 49319 19.439 1.304 1 30128000 19337 8180 13318 13554 22767 22767 -0.06087420453491177 HLEWPRPRDEY 11 Unmodified _HLEWPRPRDEY_ 0 0 0 REV__nc|ENSG00000224383|P0C7W0-2|PRR29 REV__nc|ENSG00000224383|P0C7W0-2|PRR29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 749.8685302734375 2 749.365307 1496.71606 1.3609 0.0010198 1.9114 0.0014323 3.2723 0.0024521 749.3667591456069 97.237 0.30127 91.061 90.96 91.261 -6.1757 36 16 3 0 0 0 0.17474 1 64425 64425 34.932 21.026 1 21997000 + 19338 24785 13319 13555 22768 22768 -0.012428382562347906 HLFDFAHRL 9 Unmodified _HLFDFAHRL_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8746948242188 3 385.873447 1154.59851 0.60177 0.00023221 -0.76057 -0.00029348 -0.1588 -6.1277E-05 385.8735660977383 52.702 0.44048 52.638 52.442 52.882 -0.063423 76 21 5 0 0 0 0.018301 2 28500 28500;28603 59.368 32.145 1 41238000 19339 8134 13320 13556 22769;22770 22769 0.027396736656100984 HLFDFAHRL 9 Unmodified _HLFDFAHRL_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MSMS AL20221201_MKP_PDAC_01 4 385.8733825683594 3 385.873447 1154.59851 NaN NaN NaN NaN NaN NaN NaN 95.348 1 89.172 88.672 89.672 -6.1757 0 0 0 0.20153 1 63149 63149 28.495 17.695 1 19340 8134 13320 13556 22771 22771 0.027396736656100984 HLFDFCVQV 9 Carbamidomethyl (C) _HLFDFC(Carbamidomethyl (C))VQV_ HLFDFC(1)VQV HLFDFC(64)VQV 0 1 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MSMS AL20221201_MKP_PDAC_01 4 582.7780151367188 2 582.778959 1163.54336 NaN NaN NaN NaN NaN NaN NaN 98.112 1 91.936 91.436 92.436 -6.1757 0 0 0 0.035065 1 65042 65042 64.236 32.968 1 19341 9187 13321 13557 22772 22772 858 -0.03186500917172452 HLFDIITQY 9 Unmodified _HLFDIITQY_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.29931640625 2 575.300581 1148.58661 NaN NaN NaN NaN NaN NaN NaN 76.495 1 76.016 75.516 76.516 -0.47945 0 0 0 0.20498 1 41874 41874 30.225 20.877 1 19342 10431 13322 13558 22773 22773 0.01826012131778043 HLFDIITQY 9 Unmodified _HLFDIITQY_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8021240234375 2 575.300581 1148.58661 1.4851 0.0008544 0.017369 9.9924E-06 1.5025 0.0008644 575.3011086865968 98.128 0.16593 91.952 91.891 92.057 -6.1757 15 10 2 0 0 0 0.013472 1 65079 65079 70.716 51.459 1 27576000 19343 10431 13322 13558 22774 22774 0.01826012131778043 HLFDIITQY 9 Unmodified _HLFDIITQY_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MSMS AL20221201_MKP_PDAC_01 4 575.2996215820312 2 575.300581 1148.58661 NaN NaN NaN NaN NaN NaN NaN 98.055 1 91.88 91.38 92.38 -6.1757 0 0 0 0.18753 1 65002 65002 32.305 18.399 1 19344 10431 13322 13558 22775 22775 0.01826012131778043 HLFEEFANY 9 Unmodified _HLFEEFANY_ 0 0 0 nc|ENSG00000090020|P19634-2|SLC9A1;ENSG00000090020|ENST00000263980|SLC9A1;CASZ1-SLC9A1|1|fusion nc|ENSG00000090020|P19634-2|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8113403320312 2 585.266739 1168.51892 0.72405 0.00042376 -0.53319 -0.00031206 0.19086 0.0001117 585.2667492758079 56.704 0.26344 56.635 56.517 56.78 -0.068737 16 12 2 0 0 0 0.18118 1 30830 30830 18.135 8.7875 1 2783800 19345 1545 13323 13559 22776 22776 -0.05859437799040279 HLFEYYHRL 9 Unmodified _HLFEYYHRL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5531616210938 3 426.552374 1276.63529 0.43719 0.00018648 0.58102 0.00024784 1.0182 0.00043432 426.55253933299696 40.172 0.24937 40.177 40.088 40.337 0.0050545 18 11 2 0 0 0 0.03568 1 21419 21419 47.594 34.059 1 1911600 19346 7822 13324 13560 22777 22777 0.008039254915274796 HLFEYYHRL 9 Unmodified _HLFEYYHRL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 426.552374 1276.63529 0.59842 0.00025526 -0.58253 -0.00024848 0.015887 6.7767E-06 426.88668925564855 40.515 0.14931 40.212 40.148 40.297 -0.30304 0.017298 -0.0010764 NaN 47.594 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1007200 19347 7822 13324 13560 0.008039254915274796 HLFHSFAPL 9 Unmodified _HLFHSFAPL_ 0 0 0 REV__ENST00000482578.2_1_4:154178618-154178696:+|nuORF REV__ENST00000482578.2_1_4:154178618-154178696:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2853393554688 2 534.784902 1067.55525 0.4776 0.00025541 -2.0335 -0.0010875 -1.5559 -0.00083207 535.2859440971072 90.195 0.36316 90.237 89.995 90.358 0.042175 23 12 3 0 0 0 0.25297 1 50197 50197 19.439 2.3524 1 12381000 + 19348 27725 13325 13561 22778 22778 0.02417483888325478 HLFKDKVVL 9 Unmodified _HLFKDKVVL_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MSMS AL20221201_MKP_PDAC_01 4 366.8944702148438 3 366.893848 1097.65972 NaN NaN NaN NaN NaN NaN NaN 89.168 1 82.993 82.493 83.493 -6.1757 0 0 0 0.65645 1 58854 58854 10.8 0 1 19349 3948 13326 13562 22779 22779 0.11479185645043799 HLFRLHYRVL 10 Unmodified _HLFRLHYRVL_ 0 0 0 ENST00000329043.7_1_4:47880681-47886423:-|nuORF ENST00000329043.7_1_4:47880681-47886423:-|nuORF ENST00000329043.7_1_4:47880681-47886423:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.26953125 3 451.934929 1352.78296 0.84615 0.00038241 -0.79004 -0.00035705 0.05611 2.5358E-05 451.93455066130275 58.941 0.34431 58.88 58.7 59.044 -0.060719 33 16 3 0 0 0 0.67033 1 32103 32103 3.3196 0 1 4194200 19350 11843 13327 13563 22780 22780 0.12067861816171899 HLFRTEVLF 9 Unmodified _HLFRTEVLF_ 0 0 0 REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|23|3|anti-sense REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|23|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.774658203125 2 581.324391 1160.63423 -0.024129 -1.4026E-05 -2.0635 -0.0011996 -2.0877 -0.0012136 581.3240467923055 51.684 0.1494 51.25 51.136 51.285 -0.43367 11 7 2 0 0 0 0.19496 1 27842 27842 13.906 3.0821 1 4950100 + 19351 16715 13328 13564 22781 22781 0.0603371112260902 HLFSEFRG 8 Unmodified _HLFSEFRG_ 0 0 0 ENST00000478389.5_1_20:57566845-57568278:+|nuORF ENST00000478389.5_1_20:57566845-57568278:+|nuORF ENST00000478389.5_1_20:57566845-57568278:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.5023803710938 1 992.494841 991.487565 0.64265 0.00063783 -1.0759 -0.0010678 -0.43323 -0.00042998 992.49339823305 54.354 0.41683 54.354 54.111 54.528 0 44 18 3 0 0 0 0.74163 1 30072 30072 13.508 1.8676 1 6132500 19352 14017 13329 13565 22782 22782 -0.008519660424667563 HLFSGHLSTL 10 Unmodified _HLFSGHLSTL_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2997436523438 2 556.298373 1110.58219 1.3726 0.00076357 0.68842 0.00038296 2.061 0.0011465 556.2987389460561 46.543 0.22711 46.509 46.369 46.596 -0.033417 23 10 3 0 0 0 0.13391 1 25027 25027 41.84 31.016 1 2263100 19353 10702 13330 13566 22783 22783 0.03132547708855782 HLFSHLTQAA 10 Unmodified _HLFSHLTQAA_ 0 0 0 nc|ENSG00000169946|Q8WW38-2|ZFPM2;ENSG00000169946|ENST00000407775|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 nc|ENSG00000169946|Q8WW38-2|ZFPM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7960205078125 2 562.795998 1123.57744 0.87494 0.00049241 0.22175 0.0001248 1.0967 0.00061722 562.7960824367982 40.561 0.6144 36.032 35.742 36.356 -4.5294 106 37 4 0 0 0 0.48505 1 24390 24390 17.113 0 1 121230000 19354 7930 13331 13567 22784 22784 0.020596635661149776 HLFTATINL 9 Unmodified _HLFTATINL_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2897338867188 2 515.290017 1028.56548 1.0725 0.00055265 -0.57263 -0.00029507 0.49988 0.00025758 515.2898954102878 66.604 0.40859 66.613 66.398 66.807 0.0095596 34 19 3 0 0 0 0.0083087 1 36533 36533 97.075 50.154 1 8420800 19355 3414 13332 13568 22785 22785 0.05234046822897653 HLFTRIPV 8 Unmodified _HLFTRIPV_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.796142578125 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 43.816 1 43.8 43.3 44.3 -0.015667 0 0 0 0.97444 1 23490 23490 4.3292 2.0265 1 19356 10702 13333 13569 22786 22786 0.08446074267988024 HLFVSLSTLF 10 Unmodified _HLFVSLSTLF_ 0 0 0 nc|nan|Q5VVS0|C1orf140 nc|nan|Q5VVS0|C1orf140 nc|nan|Q5VVS0|C1orf140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.552978515625 3 388.553492 1162.63865 0.0087941 3.417E-06 1.3111 0.00050942 1.3199 0.00051284 388.55368535982365 18.975 0.29734 18.981 18.802 19.099 0.0060482 37 15 3 0 0 0 0.69377 1 9579 9579 1.7423 0.54893 1 2389400 19357 16663 13334 13570 22787 22787 0.06383175545511222 HLGALLAR 8 Unmodified _HLGALLAR_ 0 0 0 ENSG00000187094|ENST00000396169|CCK;ENST00000484359.1_1_3:42304789-42306234:-|nuORF ENSG00000187094|ENST00000396169|CCK ENSG00000187094|ENST00000396169|CCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.7666931152344 2 425.766512 849.518471 -0.46822 -0.00019935 -1.065 -0.00045343 -1.5332 -0.00065278 425.76675456673075 33.278 0.25634 33.278 33.13 33.386 0 24 12 3 0 0 0 0.37649 1 17442 17442 46.921 0 1 1589700 19358 9536 13335 13571 22788 22788 0.08769232062422816 HLGCRYPRCVL 11 Unmodified _HLGCRYPRCVL_ 0 0 0 ENST00000497592.1_1_10:115890387-115891086:-|nuORF ENST00000497592.1_1_10:115890387-115891086:-|nuORF ENST00000497592.1_1_10:115890387-115891086:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.3414306640625 2 658.839359 1315.66417 0.042858 2.8236E-05 2.3537 0.0015507 2.3965 0.0015789 658.8422156828457 65.725 0.39928 59.55 59.324 59.723 -6.1757 50 23 3 0 0 0 0.6249 1 42748 42748 10.074 0 1 51498000 19359 14403 13336 13572 22789 22789 0.018960035246209372 HLGDFHRTY 9 Unmodified _HLGDFHRTY_ 0 0 0 ENSG00000125818|ENST00000335877|PSMF1 ENSG00000125818|ENST00000335877|PSMF1 ENSG00000125818|ENST00000335877|PSMF1 MSMS AL20221201_MKP_PDAC_01 4 382.5209045410156 3 382.521074 1144.54139 NaN NaN NaN NaN NaN NaN NaN 25.756 1 22.805 22.305 23.305 -2.9511 0 0 0 0.076083 1 14124 14124 46.022 27.649 1 19360 3888 13337 13573 22790 22790 -0.02509793610761335 HLGDFLVFL 9 Unmodified _HLGDFLVFL_ 0 0 0 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.796142578125 2 530.794935 1059.57532 2.2496 0.0011941 0.60428 0.00032075 2.8539 0.0015148 530.7948703869297 100.04 0.166 100 99.934 100.1 -0.036301 7 5 2 0 0 0 0.14602 1 55586 55586 28.487 3.813 1 2860300 19361 2158 13338 13574 22791 22791 0.047912348282807216 HLGEEAHKCL 10 Unmodified _HLGEEAHKCL_ 0 0 0 ENSG00000006194|ENST00000219069|ZNF263 ENSG00000006194|ENST00000219069|ZNF263 ENSG00000006194|ENST00000219069|ZNF263 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.8048706054688 2 568.77949 1135.54443 1.126 0.00064042 -2.1813 -0.0012407 -1.0554 -0.00060027 568.7783621104696 83.65 0.27874 77.474 77.366 77.645 -6.1757 15 14 2 0 0 0 0.22507 1 55128 55128 7.2892 0 1 4134000 19362 330 13339 13575 22792 22792 -0.0179228654826602 HLGGPLGTAF 10 Unmodified _HLGGPLGTAF_ 0 0 0 REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF REV__ENST00000300571.6_1_16:19871173-19871527:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.3004455566406 2 485.261259 968.507966 0.79682 0.00038667 0.65779 0.0003192 1.4546 0.00070586 485.26142679471565 31.961 0.46178 28.265 28 28.461 -3.6958 86 25 4 0 0 0 0.19662 1 18036 18036 34.102 3.4659 1 90145000 + 19363 25308 13340 13576 22793 22793 0.022452046173384588 HLGHIESKV 9 Unmodified _HLGHIESKV_ 0 0 0 REV__ENST00000527480.1_1_11:6015523-6015940:-|nuORF REV__ENST00000527480.1_1_11:6015523-6015940:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2859191894531 2 510.285266 1018.55598 -0.1832 -9.3486E-05 0.076228 3.8898E-05 -0.10698 -5.4588E-05 510.2855090940315 25.166 0.32083 25.166 25.005 25.326 0 28 17 2 0 0 0 0.43463 1 12941 12941 10.824 0 1 1476500 + 19364 28390 13341 13577 22794 22794 0.047442785373846164 HLGPEGRSV 9 Unmodified _HLGPEGRSV_ 0 0 0 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 MSMS AL20221201_MKP_PDAC_01 4 476.2541198730469 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 19.841 1 17.185 16.685 17.685 -2.6564 0 0 0 0.61214 1 10540 10540 12.241 0.60036 1 19365 16646 13342 13578 22795 22795 0.01615132469191849 HLGSPEPHTF 10 Unmodified _HLGSPEPHTF_ 0 0 0 REV__ENST00000487186.5_1_1:2143861-2144155:-|nuORF REV__ENST00000487186.5_1_1:2143861-2144155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2698364257812 2 561.272355 1120.53016 0.37095 0.00020821 -0.50012 -0.00028071 -0.12917 -7.2501E-05 561.2722217663744 63.325 0.31257 63.325 63.122 63.434 0 32 13 3 0 0 0 0.6606 1 35213 35213 7.2892 0 1 8282000 + 19366 27822 13343 13579 22796 22796 -0.025286157049322355 HLGSRDLAL 9 Unmodified _HLGSRDLAL_ 0 0 0 ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2 ENSG00000159753|ENST00000334583|CARMIL2 ENSG00000159753|ENST00000334583|CARMIL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2799377441406 2 491.277441 980.540328 0.92 0.00045198 -0.51029 -0.00025069 0.40971 0.00020128 491.2772811277963 35.654 0.56685 31.461 31.188 31.755 -4.1928 111 35 4 0 0 0 0.32871 1 20600 20600 15.847 0 1 26727000 19367 6672 13344 13580 22797 22797 0.049279920203161964 HLHCRHAF 8 Unmodified _HLHCRHAF_ 0 0 0 REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7510681152344 2 510.75087 1019.48719 NaN NaN NaN NaN NaN NaN NaN 69.09 1 69.09 68.59 69.59 0 0 0 0 0.97444 1 38499 38499 2.8892 0 1 + 19368 24739 13345 13581 22798 22798 -0.02177664243322397 HLHKMFQPM 9 Unmodified _HLHKMFQPM_ 0 0 0 REV__ENST00000539333.5_1_11:114316741-114316810:+|nuORF REV__ENST00000539333.5_1_11:114316741-114316810:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.1967163085938 3 390.196656 1167.56814 0.47863 0.00018676 0.22032 8.5969E-05 0.69895 0.00027273 390.1968487822412 10.845 0.022597 8.3631 8.3416 8.3642 -2.482 11 8 2 0 0 0 0.61256 1 5464 5464 0.26902 0 1 1408600 + 19369 17581 13346 13582 22799 22799 -0.008941443154526496 HLHLEECRLSE 11 Unmodified _HLHLEECRLSE_ 0 0 0 REV__ENSG00000115464|ENST00000398571|USP34 REV__ENSG00000115464|ENST00000398571|USP34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.8922119140625 3 455.890838 1364.65068 0.40701 0.00018555 2.5555 0.001165 2.9625 0.0013506 455.8920904074418 45.271 0.20106 40.316 40.191 40.392 -4.9549 18 13 2 0 0 0 0.63851 1 27750 27750 4.7159 0 1 11014000 + 19370 18983 13347 13583 22800 22800 -0.017055757735988664 HLHSDLYSL 9 Unmodified _HLHSDLYSL_ 0 0 0 REV__nc|ENSG00000204701|O76001|OR2J3 REV__nc|ENSG00000204701|O76001|OR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5195922851562 3 362.185579 1083.53491 0.59287 0.00021473 -0.25079 -9.0831E-05 0.34209 0.0001239 362.18542608276397 36.612 0.3053 36.612 36.448 36.754 0 42 14 4 0 0 0 0.18465 1 19396 19396 17.113 5.6182 1 14070000 + 19371 24197 13348 13584 22801 22801 -0.0035173156215932977 HLHSDLYSL 9 Unmodified _HLHSDLYSL_ 0 0 0 REV__nc|ENSG00000204701|O76001|OR2J3 REV__nc|ENSG00000204701|O76001|OR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2772216796875 2 542.774731 1083.53491 0.72917 0.00039577 -2.3204 -0.0012595 -1.5912 -0.00086368 542.7731209139512 36.599 0.37006 36.599 36.487 36.857 0 26 17 3 0 0 0 0.18465 1 19406 19406 24.674 6.5389 1 6251500 + 19372 24197 13348 13584 22802 22802 -0.0035173156215932977 HLHSDLYSL 9 Unmodified _HLHSDLYSL_ 0 0 0 REV__nc|ENSG00000204701|O76001|OR2J3 REV__nc|ENSG00000204701|O76001|OR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1854553222656 3 362.185579 1083.53491 -0.37586 -0.00013613 0.50918 0.00018442 0.13332 4.8287E-05 362.1858063620997 36.777 0.19388 36.528 36.45 36.644 -0.2497 15 8 2 0 0 0 0.28047 1 19320 19320 12.241 0 1 4219100 + 19373 24197 13348 13584 22803 22803 -0.0035173156215932977 HLHSDLYSL 9 Unmodified _HLHSDLYSL_ 0 0 0 REV__nc|ENSG00000204701|O76001|OR2J3 REV__nc|ENSG00000204701|O76001|OR2J3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 362.185579 1083.53491 -0.37586 -0.00013613 0.50918 0.00018442 0.13332 4.8287E-05 362.1858063620997 36.777 0.19388 36.528 36.45 36.644 -0.2497 -0.042218 0.0005597 NaN 17.113 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4219100 + 19374 24197 13348 13584 -0.0035173156215932977 HLHSPSSPLI 10 Unmodified _HLHSPSSPLI_ 0 0 0 REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF REV__ENST00000486818.5_1_7:72951630-72952470:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3007202148438 2 544.298373 1086.58219 NaN NaN NaN NaN NaN NaN NaN 40.629 1 40.629 40.129 41.129 0 0 0 0 0.5638 1 21852 21852 23.148 1.4018 1 + 19375 27811 13349 13585 22804 22804 0.04236547708865146 HLIAKDSGS 9 Unmodified _HLIAKDSGS_ 0 0 0 REV__ENST00000522311.1_1_8:103851920-103851992:-|nuORF REV__ENST00000522311.1_1_8:103851920-103851992:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7462463378906 2 464.248349 926.482145 -0.10219 -4.744E-05 -1.4654 -0.0006803 -1.5676 -0.00072774 464.24802185432924 38.094 0.12102 37.822 37.761 37.882 -0.27133 7 5 2 0 0 0 0.21052 1 20064 20064 6.7232 2.3939 1 769220 + 19376 28302 13350 13586 22805 22805 0.015963103750550545 HLIHEVTKV 9 Unmodified _HLIHEVTKV_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2138061523438 3 359.213469 1074.61858 0.9925 0.00035652 0.7643 0.00027455 1.7568 0.00063107 359.2136305764565 26.324 0.25771 23.373 23.244 23.502 -2.9511 19 13 2 0 0 0 0.23158 1 14508 14508 19.362 11.753 1 4928600 19377 16072 13351 13587 22806 22806 0.0842542460554796 HLIHLMFDD 9 Unmodified _HLIHLMFDD_ 0 0 0 nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4;nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF nc|ENSG00000111783|Q33E94-3|RFX4 nc|ENSG00000111783|Q33E94-3|RFX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.5218505859375 3 380.855065 1139.54336 0.61402 0.00023385 1.4123 0.00053788 2.0263 0.00077173 381.18979766586585 85.443 0.81499 79.267 78.82 79.635 -6.1757 65 49 2 0 0 0 0.18941 1 56259 56259 13.906 6.2971 1 33353000 19378 2826 13352 13588 22807 22807 -0.02082500917163088 HLILESGDKGF 11 Unmodified _HLILESGDKGF_ 0 0 0 REV__ENST00000562426.5_1_16:57481417-57490911:+|nuORF REV__ENST00000562426.5_1_16:57481417-57490911:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3203125 2 608.322045 1214.62954 NaN NaN NaN NaN NaN NaN NaN 82.577 1 82.082 81.582 82.582 -0.4952 0 0 0 0.91154 1 45206 45206 6.7232 1.4925 1 + 19379 17807 13353 13589 22808 22808 0.030807821891812637 HLINYIIFL 9 Unmodified _HLINYIIFL_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3427734375 2 573.33951 1144.66447 4.282 0.0024551 0.07654 4.3884E-05 4.3586 0.0024989 573.3395005224407 98.987 0.30345 98.959 98.833 99.137 -0.028282 39 10 6 0 0 0 0.028475 1 54965 54965 63.563 35.076 1 71542000 19380 7493 13354 13590 22809 22809 0.09792069787795299 HLINYIIFL 9 Unmodified _HLINYIIFL_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.3403930664062 2 573.33951 1144.66447 0.80884 0.00046374 0.80721 0.00046281 1.6161 0.00092655 573.3398197106009 101.67 0.095123 95.493 95.429 95.524 -6.1757 13 4 4 0 0 0 0.07087 1 68241 68241 53.576 28.902 1 58237000 19381 7493 13354 13590 22810 22810 0.09792069787795299 HLIRHQKF 8 Unmodified _HLIRHQKF_ 0 0 0 ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8191528320312 2 539.817067 1077.61958 0.77596 0.00041888 4.186 0.0022597 4.962 0.0026786 539.819463033669 101.4 0.12943 95.221 95.144 95.274 -6.1757 19 6 4 0 0 0 0.71616 1 68032 68032 15.768 2.2603 1 76112000 19382 4042 13355 13591 22811 22811 0.08387683765113252 HLISVVWSL 9 Unmodified _HLISVVWSL_ 0 0 0 REV__ENSG00000280094|ENST00000623530|OR1B1 REV__ENSG00000280094|ENST00000623530|OR1B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.2097473144531 3 351.874565 1052.60187 0.96654 0.0003401 -2.3988 -0.00084406 -1.4322 -0.00050396 351.8732002224422 24.515 0.36283 21.688 21.545 21.908 -2.8273 32 19 2 0 0 0 0.15672 1 13323 13323 19.362 0.98885 1 3658600 + 19383 24680 13356 13592 22812 22812 0.07766923719623264 HLKAQLMEN 9 Unmodified _HLKAQLMEN_ 0 0 0 REV__nc|ENSG00000068400|Q4V328-2|GRIPAP1 REV__nc|ENSG00000068400|Q4V328-2|GRIPAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0219116210938 3 361.858698 1082.55426 0.83137 0.00030084 0.93276 0.00033753 1.7641 0.00063836 361.858868966599 15.202 0.12489 12.675 12.612 12.737 -2.5273 32 18 3 0 0 0 0.21493 1 7786 7786 4.897 0 1 1742500 + 19384 17436 13357 13593 22813 22813 0.016289014571157168 HLKEDQTEYL 10 Unmodified _HLKEDQTEYL_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000282100|Q58FF6|HSP90AB4P ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2139892578125 3 425.878704 1274.61428 1.3406 0.00057093 1.5215 0.00064798 2.8621 0.0012189 426.21278075645324 20.4 0.27585 17.707 17.525 17.801 -2.693 20 15 2 0 0 0 0.67459 1 10876 10876 3.0723 0.81953 1 877810 19385 1671;1308;16612 13358 13594 22814 22814 -0.0120412939866128 HLKEQQRQ 8 Unmodified _HLKEQQRQ_ 0 0 0 nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2906494140625 2 533.791247 1065.56794 0.06688 3.57E-05 0.046653 2.4903E-05 0.11353 6.0603E-05 533.7911887278555 45.827 0.17191 45.503 45.468 45.64 -0.32425 13 9 2 0 0 0 8.7369 1 24507 24507 8.5933 0.68312 1 12007000 19386 7428 13359 13595 22815 22815 0.037778952805638255 HLKKDCPEDF 10 Unmodified _HLKKDCPEDF_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.7490539550781 3 411.197379 1230.57031 1.0239 0.00042102 1.3851 0.00056957 2.409 0.00099059 411.1983301679177 22.141 0.83017 19.406 18.935 19.765 -2.7348 81 45 3 0 0 0 0.23634 1 12083 12083 1.7423 0.14999 1 6884500 19387 1361 13360 13596 22816 22816 -0.035754370966515125 HLKKLDELV 9 Unmodified _HLKKLDELV_ 0 0 0 REV__RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant REV__RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.1860046386719 3 365.557125 1093.64954 1.5143 0.00055356 -0.12609 -4.6095E-05 1.3882 0.00050746 365.5570148719868 36.846 0.29639 32.562 32.353 32.65 -4.2835 38 17 3 0 0 0 0.21767 1 21500 21500 2.9952 0 1 11804000 + 19388 17118 13361 13597 22817 22817 0.1064657791978334 HLKLGTFNSL 10 Unmodified _HLKLGTFNSL_ 0 0 0 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3233642578125 2 565.321848 1128.62914 0.9995 0.00056504 -3.8454 -0.0021739 -2.8459 -0.0016089 565.3198150673595 101.52 0.16231 95.34 95.252 95.414 -6.1757 12 7 2 0 0 0 0.44373 1 68113 68113 19.257 0 1 19185000 + 19389 17782 13362 13598 22818 22818 0.0699740725999618 HLKPDFID 8 Unmodified _HLKPDFID_ 0 0 0 OGT|p.R117H|1|0.42|ENSG00000147162|chrX:71537960-71537960|G/A|missense_variant OGT|p.R117H|1|0.42|ENSG00000147162|chrX:71537960-71537960|G/A|missense_variant OGT|p.R117H|1|0.42|ENSG00000147162|chrX:71537960-71537960|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2635803222656 2 492.761092 983.507631 0.35789 0.00017635 0.41023 0.00020214 0.76812 0.0003785 492.76129302147575 39.99 0.21138 39.693 39.548 39.759 -0.29716 17 9 2 0 0 0 0.74163 1 21124 21124 13.508 0.97634 1 1857000 19390 16678 13363 13599 22819 22819 0.0152178489746575 HLKTKRILRRN 11 Unmodified _HLKTKRILRRN_ 0 0 0 nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-3|U2SURP MSMS AL20221201_MKP_PDAC_01 4 478.9748840332031 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 17.729 1 15.143 14.643 15.643 -2.5866 0 0 0 0.94337 1 9297 9297 0.094841 0.021578 1 19391 16328 13364 13600 22820 22820 0.2059369854760007 HLLAIISFL 9 Unmodified _HLLAIISFL_ 0 0 0 REV__ENST00000539664.2_1_7:28993099-28993321:-|nuORF REV__ENST00000539664.2_1_7:28993099-28993321:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 513.8215942382812 2 513.820953 1025.62735 NaN NaN NaN NaN NaN NaN NaN 100.81 1 94.638 94.138 95.138 -6.1757 0 0 0 0.38239 1 67518 67518 20.871 0 1 + 19392 28569 13365 13601 22821 22821 0.11556398242055366 HLLAKVQQE 9 Unmodified _HLLAKVQQE_ 0 0 0 nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40 nc|ENSG00000165801|Q8TER5-4|ARHGEF40 nc|ENSG00000165801|Q8TER5-4|ARHGEF40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2546997070312 2 533.306198 1064.59784 0.21582 0.0001151 0.29828 0.00015908 0.51411 0.00027418 533.3062732160993 43.344 0.26405 43.344 43.222 43.486 0 20 12 2 0 0 0 0.19205 1 23602 23602 14.838 0 1 2913400 19393 7388 13366 13602 22822 22822 0.06812834225888764 HLLALRPY 8 Unmodified _HLLALRPY_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7954711914062 2 491.795269 981.575986 0.85222 0.00041912 2.0066 0.00098684 2.8588 0.001406 491.79595487223503 48.651 0.33798 43.255 43.069 43.407 -5.3961 32 19 2 0 0 0 0.80232 1 30370 30370 5.2307 0 1 21940000 19394 2348 13367 13603 22823 22823 0.08446074267999393 HLLALRPY 8 Unmodified _HLLALRPY_ 0 0 0 ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.795269 981.575986 0.045633 2.2442E-05 3.4257 0.0016847 3.4713 0.0017072 491.79724162337317 43.427 0.30393 43.427 43.222 43.526 0 0.086279 0.00099682 NaN 5.2307 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3567800 19395 2348 13367 13603 0.08446074267999393 HLLATKLKRF 10 Unmodified _HLLATKLKRF_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.596923828125 3 409.595914 1225.76591 NaN NaN NaN NaN NaN NaN NaN 55.678 1 55.678 55.178 56.178 0 0 0 0 0.99897 1 30939 30939 0.77653 0.27058 1 19396 16241 13368 13604 22824 22824 0.16205941210341734 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 ENSG00000065457|ENST00000564657|ADAT1;nc|ENSG00000065457|Q9BUB4-2|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.8115234375 2 563.810782 1125.60701 0.33405 0.00018834 -0.88939 -0.00050145 -0.55534 -0.00031311 563.8109174044185 69.491 0.49262 69.491 69.304 69.797 0 74 22 4 0 0 0 0.012158 3 38678 38678;38772;38870 74.396 33.948 1 8574600 19397 904 13369 13605 22825;22826;22827 22825 0.04923182791549152 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 ENSG00000065457|ENST00000564657|ADAT1;nc|ENSG00000065457|Q9BUB4-2|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8115844726562 2 563.810782 1125.60701 NaN NaN NaN NaN NaN NaN NaN 69.846 1 69.367 68.867 69.867 -0.47903 0 0 0 0.096036 1 38185 38185 44.407 19.733 1 19398 904 13369 13605 22828 22828 0.04923182791549152 HLLEEPIYL 9 Unmodified _HLLEEPIYL_ 0 0 0 ENSG00000065457|ENST00000564657|ADAT1;nc|ENSG00000065457|Q9BUB4-2|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.80859375 2 563.810782 1125.60701 1.2887 0.00072658 -1.151 -0.00064896 0.13767 7.7619E-05 563.8098707444366 95.182 0.65691 89.006 88.625 89.282 -6.1757 68 36 3 0 0 0 0.023164 2 62967 62967;63083 60.39 30.165 1 64531000 19399 904 13369 13605 22829;22830 22829 0.04923182791549152 HLLERNGAGPF 11 Unmodified _HLLERNGAGPF_ 0 0 0 REV__ENST00000599668.1_1_19:6679194-6680148:-|nuORF REV__ENST00000599668.1_1_19:6679194-6680148:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8204956054688 2 605.820004 1209.62546 0.56067 0.00033966 0.10236 6.2013E-05 0.66303 0.00040168 605.8200330109863 36.85 0.44466 32.567 32.337 32.782 -4.2835 72 26 4 0 0 0 0.24216 1 21480 21480 29.841 4.4413 1 33517000 + 19400 29244 13370 13606 22831 22831 0.029027374861243516 HLLFYYKWEDW 11 Unmodified _HLLFYYKWEDW_ 0 0 0 REV__ENST00000411846.6_1_1:108815923-108880006:+|nuORF REV__ENST00000411846.6_1_1:108815923-108880006:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.3840942382812 2 800.385177 1598.7558 NaN NaN NaN NaN NaN NaN NaN 45.9 1 40.945 40.445 41.445 -4.9549 0 0 0 0.94144 1 28264 28264 1.4819 1.1313 1 + 19401 26716 13371 13607 22832 22832 -0.019627113055321388 HLLGLLTIL 9 Unmodified _HLLGLLTIL_ 0 0 0 REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1 REV__nc|ENSG00000015520|Q9UHC9-4|NPC1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.8294982910156 2 496.828778 991.643003 0.98087 0.00048733 0.42486 0.00021109 1.4057 0.00069841 496.82897737224295 101.4 0.11111 95.221 95.163 95.274 -6.1757 14 5 4 0 0 0 0.013419 1 68034 68034 70.865 11.069 1 64871000 + 19402 17087 13372 13608 22833 22833 0.14684684759083666 HLLGRLAAI 9 Unmodified _HLLGRLAAI_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000479992.5_1_19:49990877-49993604:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.3089294433594 2 482.308544 962.602535 1.4835 0.00071552 -0.53032 -0.00025578 0.95322 0.00045974 482.3082199715116 50.103 0.32297 50.054 49.907 50.23 -0.048824 34 15 3 0 0 0 0.095405 1 27065 27065 34.102 0 1 7099100 19403 5424 13373 13609 22834 22834 0.1197376315932388 HLLHVFDEY 9 Unmodified _HLLHVFDEY_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7911987304688 2 586.790381 1171.56621 0.4063 0.00023841 0.44448 0.00026082 0.85079 0.00049923 586.7905711039631 53.715 0.2348 53.263 53.148 53.383 -0.45173 27 11 3 0 0 0 0.013472 1 29059 29059 70.716 45.316 1 5156000 19404 9893 13374 13610 22835 22835 -0.01271158528061278 HLLIEDSFGL 10 Unmodified _HLLIEDSFGL_ 0 0 0 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3064575195312 2 572.305864 1142.59717 0.39374 0.00022534 0.65477 0.00037473 1.0485 0.00060007 572.3060089547741 58.574 0.28219 58.574 58.441 58.723 0 35 11 4 0 0 0 0.48834 1 32618 32618 16.942 1.0951 1 4946200 + 19405 29716 13375 13611 22836 22836 0.031579947861928304 HLLKMRFI 8 Unmodified _HLLKMRFI_ 0 0 0 REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF REV__ENST00000467604.5_1_3:118931398-118931611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.9384155273438 2 529.320597 1056.62664 NaN NaN NaN NaN NaN NaN NaN 95.688 1 89.512 89.012 90.012 -6.1757 0 0 0 0.94749 1 63384 63384 11.114 2.5212 1 + 19406 27436 13376 13612 22837 22837 0.10059280321343067 HLLLARQI 8 Unmodified _HLLLARQI_ 0 0 0 ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.309326171875 2 482.308544 962.602535 1.4835 0.00071552 -0.53032 -0.00025578 0.95322 0.00045974 482.3082199715116 50.103 0.32297 50.054 49.907 50.23 -0.048824 34 15 3 0 0 0 0.67481 1 27163 27163 19.439 2.4967 1 7099100 19407 8787 13377 13613 22838 22838 0.1197376315932388 HLLLCRPSVM 10 Unmodified _HLLLCRPSVM_ 0 0 0 ENST00000361672.6_1_X:11793354-11793456:+|nuORF ENST00000361672.6_1_X:11793354-11793456:+|nuORF ENST00000361672.6_1_X:11793354-11793456:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8460693359375 2 584.820104 1167.62565 0.62946 0.00036812 -0.86653 -0.00050677 -0.23707 -0.00013864 585.3208257361109 49.079 0.14691 49.035 48.946 49.093 -0.04369 14 6 3 0 0 0 0.23489 1 26498 26498 7.9102 1.187 1 577470 19408 12189 13378 13614 22839 22839 0.04854697890118587 HLLLGWLLW 9 Unmodified _HLLLGWLLW_ 0 0 0 REV__nc|ENSG00000167323|Q13586-2|STIM1 REV__nc|ENSG00000167323|Q13586-2|STIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8203735351562 2 575.84222 1149.66989 1.4114 0.00081275 1.3372 0.00077004 2.7487 0.0015828 575.8430642684355 100.79 0.10989 94.619 94.541 94.651 -6.1757 10 7 2 0 0 0 0.3554 1 67453 67453 14.582 3.7578 1 19738000 + 19409 22203 13379 13615 22840 22840 0.10103793370262792 HLLLPLVML 9 Unmodified _HLLLPLVML_ 0 0 0 nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36 nc|ENSG00000178226|Q5K4E3-2|PRSS36 nc|ENSG00000178226|Q5K4E3-2|PRSS36 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.5222473144531 3 350.224429 1047.65146 1.0311 0.00036112 1.6256 0.00056931 2.6567 0.00093043 350.2251185974696 22.685 0.49615 19.906 19.67 20.166 -2.7784 52 34 2 0 0 0 0.21302 1 12201 12201 5.7319 5.7319 1 11327000 19410 8736 13380 13616 22841 22841 0.1295391540406854 HLLNESPML 9 Oxidation (M) _HLLNESPM(Oxidation (M))L_ HLLNESPM(1)L HLLNESPM(46)L 0 0 1 ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2713623046875 2 535.270967 1068.52738 0.096081 5.1429E-05 0.95128 0.00050919 1.0474 0.00056062 535.2715109489957 44.181 0.19424 44.181 44.07 44.265 0 17 9 2 0 0 0 0.047196 1 24056 24056 46.021 8.047 1 10097000 19411 6396 13381 13617 22842 22842 1125 -0.004142071540854886 HLLNEVNEL 9 Unmodified _HLLNEVNEL_ 0 0 0 REV__nc|ENSG00000291118|Q75MW2-2|ZNF767P REV__nc|ENSG00000291118|Q75MW2-2|ZNF767P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7879638671875 2 540.787838 1079.56112 -0.090351 -4.8861E-05 -0.10226 -5.5301E-05 -0.19261 -0.00010416 540.7876767442297 40.542 0.32752 40.542 40.412 40.739 0 28 17 2 0 0 0 0.047196 1 21790 21790 46.021 8.047 1 6191800 + 19412 27354 13382 13618 22843 22843 0.024525376093151863 HLLNPDFSM 9 Unmodified _HLLNPDFSM_ 0 0 0 REV__nc|ENSG00000009307|O75534-2|CSDE1 REV__nc|ENSG00000009307|O75534-2|CSDE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2564086914062 2 537.257859 1072.50117 NaN NaN NaN NaN NaN NaN NaN 35.898 1 35.676 35.176 36.176 -0.2224 0 0 0 0.70001 1 18815 18815 9.3831 1.473 1 + 19413 17031 13383 13619 22844 22844 -0.03218476325537267 HLLPSTYFS 9 Unmodified _HLLPSTYFS_ 0 0 0 ENST00000442354.1_1_9:44052481-44067763:-|nuORF ENST00000442354.1_1_9:44052481-44067763:-|nuORF ENST00000442354.1_1_9:44052481-44067763:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7745361328125 2 532.7742 1063.53385 0.039961 2.129E-05 0.061893 3.2975E-05 0.10185 5.4265E-05 532.7746538436533 54.403 0.65485 53.936 53.626 54.281 -0.46664 89 33 3 0 0 0 0.12841 1 29519 29519 30.225 1.738 1 10271000 19414 13408 13384 13620 22845 22845 0.004620540689529662 HLLQDSSGSF 10 Unmodified _HLLQDSSGSF_ 0 0 0 nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1 nc|ENSG00000163814|Q9H5V8-2|CDCP1 nc|ENSG00000163814|Q9H5V8-2|CDCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7608032226562 2 545.76182 1089.50909 NaN NaN NaN NaN NaN NaN NaN 38.509 1 38.509 38.009 39.009 0 0 0 0 0.028974 1 20575 20575 89.401 52.895 1 19415 7076 13385 13621 22846 22846 -0.03208625804427356 HLLQLPENY 9 Unmodified _HLLQLPENY_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3244018554688 2 563.798206 1125.58186 0.76747 0.0004327 0.773 0.00043582 1.5405 0.00086852 563.7982347064491 59.206 0.2835 59.153 58.929 59.213 -0.053062 21 13 2 0 0 0 0.18118 1 32258 32258 12.532 0 1 2303300 19416 5601 13386 13622 22847 22847 0.024091279889944417 HLLQQLKRQI 10 Unmodified _HLLQQLKRQI_ 0 0 0 REV__ENST00000284727.8_1_2:176042765-176042819:-|nuORF REV__ENST00000284727.8_1_2:176042765-176042819:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.8954467773438 2 638.896046 1275.77754 0.62557 0.00039967 -0.53445 -0.00034146 0.091121 5.8217E-05 638.8957320371205 58.576 0.19413 58.515 58.394 58.588 -0.060719 16 9 2 0 0 0 0.68844 1 31927 31927 1.8442 0 1 3098400 + 19417 25212 13387 13623 22848 22848 0.1506813823370976 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8832092285156 3 393.884235 1178.63087 NaN NaN NaN NaN NaN NaN NaN 21.094 1 21.123 20.623 21.623 0.028357 0 0 0 0.050352 1 10695 10695 43.772 24.41 1 19418 4363 13388 13624 22849 22849 0.04870461068571785 HLLQYNHRV 9 Unmodified _HLLQYNHRV_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.8841247558594 3 393.884235 1178.63087 0.3806 0.00014991 0.1254 4.9392E-05 0.506 0.00019931 393.88409165840176 24.809 0.2903 21.926 21.778 22.068 -2.8831 45 17 3 0 0 0 0.0082281 1 13514 13514 72.968 45.745 1 14626000 19419 4363 13388 13624 22850 22850 0.04870461068571785 HLLSDELLL 9 Unmodified _HLLSDELLL_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.8035888671875 2 526.802957 1051.59136 0.44898 0.00023653 0.55696 0.00029341 1.0059 0.00052993 526.8032731656017 75.711 0.33198 75.711 75.523 75.855 0 30 13 3 0 0 0 0.078417 2 42058 42058;42159 38.151 7.9264 1 2177500 19420 316 13389 13625 22851;22852 22851 0.06762896274517516 HLLSDELLL 9 Unmodified _HLLSDELLL_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.8043212890625 2 526.802957 1051.59136 0.26133 0.00013767 0.90227 0.00047532 1.1636 0.00061299 526.8034379929504 76.057 0.39427 75.578 75.393 75.787 -0.47945 23 16 2 0 0 0 0.30562 1 41670 41670 16.942 0 1 787310 19421 316 13389 13625 22853 22853 0.06762896274517516 HLLSGPLL 8 Unmodified _HLLSGPLL_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2637939453125 2 425.263271 848.511988 0.95927 0.00040794 0.5038 0.00021425 1.4631 0.00062219 425.26339891805526 45.827 0.52185 40.873 40.613 41.135 -4.9549 54 34 2 0 0 0 0.44122 1 28159 28159 40.449 6.2612 1 17642000 + 19422 27458 13390 13626 22854 22854 0.08167294111046886 HLLTYALGW 9 Unmodified _HLLTYALGW_ 0 0 0 REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5319213867188 3 358.530798 1072.57057 1.4225 0.00051001 -0.25284 -9.0652E-05 1.1697 0.00041936 358.5306669760495 80.73 0.79215 74.554 74.152 74.944 -6.1757 71 43 2 0 0 0 0.48152 1 53046 53046 5.2969 0 1 31397000 + 19423 20278 13391 13627 22855 22855 0.037183506854944426 HLLVYYKL 8 Unmodified _HLLVYYKL_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MSMS AL20221201_MKP_PDAC_01 4 350.2122192382812 3 350.211177 1047.6117 NaN NaN NaN NaN NaN NaN NaN 18.098 1 15.477 14.977 15.977 -2.6215 0 0 0 0.97348 1 9513 9513 3.9444 0 1 + 19424 21169 13392 13628 22856 22856 0.08980111724986273 HLLYAGLVL 9 Unmodified _HLLYAGLVL_ 0 0 0 ENST00000520378.1_1_5:150518646-150537284:-|nuORF ENST00000520378.1_1_5:150518646-150537284:-|nuORF ENST00000520378.1_1_5:150518646-150537284:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8056030273438 2 499.805303 997.596052 0.079512 3.974E-05 1.3673 0.00068338 1.4468 0.00072312 499.805981628159 72.509 0.21814 72.551 72.399 72.617 0.041725 17 9 2 0 0 0 0.22317 1 39921 39921 20.871 0 1 1720700 19425 14725 13393 13629 22857 22857 0.09715825207945272 HLLYLSHHL 9 Unmodified _HLLYLSHHL_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.21240234375 3 378.213581 1131.61891 -0.3662 -0.0001385 -2.1306 -0.00080583 -2.4968 -0.00094433 378.21282412208984 22.355 0.19846 22.355 22.224 22.423 0 15 9 2 0 0 0 0.53666 1 11351 11351 2.9952 0.49676 1 1451000 + 19426 27477 13394 13630 22858 22858 0.05836844325426682 HLLYLSHHL 9 Unmodified _HLLYLSHHL_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.3502197265625 2 566.816733 1131.61891 0.51617 0.00029257 3.8461 0.00218 4.3623 0.0024726 566.8198719753937 99.064 0.084305 92.888 92.824 92.908 -6.1757 7 4 2 0 0 0 0.18941 1 65880 65880 9.3474 2.6243 1 12484000 + 19427 27477 13394 13630 22859 22859 0.05836844325426682 HLLYLSHHL 9 Unmodified _HLLYLSHHL_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 378.213581 1131.61891 -0.3662 -0.0001385 -2.1306 -0.00080583 -2.4968 -0.00094433 378.21282412208984 22.355 0.19846 22.355 22.224 22.423 0 0 0 NaN 2.9952 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1451000 + 19428 27477 13394 13630 0.05836844325426682 HLMEYLVAGL 10 Unmodified _HLMEYLVAGL_ 0 0 0 REV__ENSG00000101049|ENST00000373100|SGK2 REV__ENSG00000101049|ENST00000373100|SGK2 MSMS AL20221201_MKP_PDAC_01 4 382.5396728515625 3 382.538965 1144.59507 NaN NaN NaN NaN NaN NaN NaN 17.654 1 15.067 14.567 15.567 -2.5866 0 0 0 0.96981 1 9250 9250 1.9064 0.57673 1 + 19429 18126 13395 13631 22860 22860 0.028552427767408517 HLMLLHYEI 9 Unmodified _HLMLLHYEI_ 0 0 0 ENSG00000196329|ENST00000358647|GIMAP5;nc|ENSG00000196329|Q96F15-2|GIMAP5 ENSG00000196329|ENST00000358647|GIMAP5 ENSG00000196329|ENST00000358647|GIMAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.810791015625 2 584.812802 1167.61105 0.58899 0.00034445 -1.8227 -0.001066 -1.2338 -0.00072152 584.8115465689613 79.417 0.368 79.472 79.257 79.625 0.054977 34 13 3 0 0 0 0.3554 1 43872 43872 14.582 1.0738 1 3545200 19430 9798 13396 13632 22861 22861 0.03394949013659243 HLMSNIFMPTY 11 Unmodified _HLMSNIFMPTY_ 0 0 0 REV__ENSG00000124568|ENST00000244527|SLC17A1 REV__ENSG00000124568|ENST00000244527|SLC17A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8176879882812 2 677.320134 1352.62571 -0.02135 -1.4461E-05 -3.6336 -0.0024611 -3.6549 -0.0024755 677.3173505883265 39.749 0.21403 39.749 39.639 39.853 0 19 10 3 0 0 0 0.44182 1 21333 21333 19.362 7.8672 1 2049700 + 19431 19455 13397 13633 22862 22862 -0.03649346900533601 HLMSNIFMPTY 11 Unmodified _HLMSNIFMPTY_ 0 0 0 REV__ENSG00000124568|ENST00000244527|SLC17A1 REV__ENSG00000124568|ENST00000244527|SLC17A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 677.320134 1352.62571 -0.02135 -1.4461E-05 -3.6336 -0.0024611 -3.6549 -0.0024755 677.3173505883265 39.749 0.21403 39.749 39.639 39.853 0 0 0 NaN 19.362 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2049700 + 19432 19455 13397 13633 -0.03649346900533601 HLMVYAKV 8 Unmodified _HLMVYAKV_ 0 0 0 REV__nc|ENSG00000042813|Q9BS86-2|ZPBP REV__nc|ENSG00000042813|Q9BS86-2|ZPBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7689208984375 2 480.770406 959.526258 NaN NaN NaN NaN NaN NaN NaN 70.088 1 69.609 69.109 70.109 -0.47903 0 0 0 0.97348 1 38324 38324 5.7604 0.52976 1 + 19433 17208 13398 13634 22863 22863 0.04487623267687013 HLNGAKGF 8 Unmodified _HLNGAKGF_ 0 0 0 REV__ENST00000486954.1_1_7:150139732-150139819:+|nuORF REV__ENST00000486954.1_1_7:150139732-150139819:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2279052734375 2 422.22722 842.439886 0.41209 0.00017399 1.4571 0.00061524 1.8692 0.00078924 422.22771364374574 53.83 0.37703 53.364 53.17 53.547 -0.46664 42 18 3 0 0 0 0.80676 1 29096 29096 2.5775 0 1 8761600 + 19434 27816 13399 13635 22864 22864 0.01236379757335726 HLNISYEDFF 10 Unmodified _HLNISYEDFF_ 0 0 0 ENSG00000153989|ENST00000368494|NUS1 ENSG00000153989|ENST00000368494|NUS1 ENSG00000153989|ENST00000368494|NUS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 642.2909545898438 2 642.798403 1283.58225 1.1124 0.00071503 -2.1376 -0.0013741 -1.0253 -0.00065904 642.7967400429509 63.891 0.46714 57.715 57.45 57.918 -6.1757 37 25 2 0 0 0 0.22941 1 41485 41485 13.906 8.1742 1 16195000 19435 6286 13400 13636 22865 22865 -0.0481949708182583 HLNMEKEKYV 10 Unmodified _HLNMEKEKYV_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8882751464844 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 14.247 1 14.247 13.747 14.747 0 0 0 0 0.96981 1 6758 6758 1.9064 0 1 19436 8170 13401 13637 22866 22866 0.010571113458127002 HLNYVRSFF 9 Unmodified _HLNYVRSFF_ 0 0 0 REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF REV__ENST00000466217.5_1_2:220090131-220093204:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8727722167969 3 394.873336 1181.59818 0.63022 0.00024886 -0.40263 -0.00015899 0.22759 8.9871E-05 394.87314724179174 29.033 0.18496 28.971 28.876 29.061 -0.062159 9 7 2 0 0 0 0.39863 1 15029 15029 8.1555 2.8586 1 3870100 + 19437 27405 13402 13638 22867 22867 0.014642539457554449 HLPACRQAF 9 Unmodified _HLPACRQAF_ 0 0 0 ENST00000485191.5_1_19:1276124-1276268:+|nuORF ENST00000485191.5_1_19:1276124-1276268:+|nuORF ENST00000485191.5_1_19:1276124-1276268:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7649536132812 2 521.766186 1041.51782 NaN NaN NaN NaN NaN NaN NaN 92.115 1 91.634 91.134 92.134 -0.48092 0 0 0 0.82396 1 50352 50352 4.756 1.8668 1 19438 14164 13403 13639 22868 22868 -0.0012793064895504358 HLPAETRQ 8 Unmodified _HLPAETRQ_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP;nc|ENSG00000089234|Q7Z569-2|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2538757324219 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 27.554 1 27.583 27.083 28.083 0.028664 0 0 0 0.97444 1 14323 14323 0.79363 0 1 19439 1524 13404 13640 22869 22869 0.01615132469191849 HLPAPDTALFV 11 Unmodified _HLPAPDTALFV_ 0 0 0 REV__ENST00000542933.5_1_12:122233718-122234021:-|nuORF REV__ENST00000542933.5_1_12:122233718-122234021:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.5419006347656 3 394.21688 1179.62881 NaN NaN NaN NaN NaN NaN NaN 91.887 1 85.711 85.211 86.211 -6.1757 0 0 0 0.92234 1 60748 60748 2.8433 0 1 + 19440 28627 13405 13641 22870 22870 0.04617987540086688 HLPDAAALLPV 11 Unmodified _HLPDAAALLPV_ 0 0 0 ENST00000292591.11_1_5:179228908-179233794:-|nuORF ENST00000292591.11_1_5:179228908-179233794:-|nuORF ENST00000292591.11_1_5:179228908-179233794:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8245849609375 2 558.824224 1115.63389 1.3803 0.00077134 0.68656 0.00038367 2.0669 0.001155 558.8247933784016 96.333 0.47911 90.157 89.907 90.387 -6.1757 48 23 3 0 0 0 0.025642 1 63892 63892 56.177 23.391 1 36925000 19441 11475 13406 13642 22871 22871 0.08070291402736984 HLPLLGGGG 9 Unmodified _HLPLLGGGG_ 0 0 0 REV__nc|ENSG00000125826|Q9BYM8-4|RBCK1 REV__nc|ENSG00000125826|Q9BYM8-4|RBCK1 MSMS AL20221201_MKP_PDAC_01 4 410.7376403808594 2 410.73742 819.460287 NaN NaN NaN NaN NaN NaN NaN 45.185 1 40.333 39.833 40.833 -4.852 0 0 0 0.38239 1 27693 27693 20.871 5.103 1 + 19442 26342 13407 13643 22872 22872 0.0433355041715231 HLPMSIPSF 9 Unmodified _HLPMSIPSF_ 0 0 0 REV__ENST00000581471.2_1_18:5238635-5238728:+|nuORF REV__ENST00000581471.2_1_18:5238635-5238728:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7658081054688 2 514.76532 1027.51609 NaN NaN NaN NaN NaN NaN NaN 65.175 1 64.691 64.191 65.191 -0.48428 0 0 0 0.6032 1 35565 35565 12.532 1.4171 1 + 19443 29065 13408 13644 22873 22873 0.003430155424439363 HLPPDLPVSL 10 Unmodified _HLPPDLPVSL_ 0 0 0 ENST00000554736.5_1_14:52328042-52344361:+|nuORF ENST00000554736.5_1_14:52328042-52344361:+|nuORF ENST00000554736.5_1_14:52328042-52344361:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2097778320312 3 363.209725 1086.60735 0.022214 8.0685E-06 0.62012 0.00022523 0.64233 0.0002333 363.2099064989722 33.706 0.34913 33.735 33.582 33.931 0.028931 44 14 4 0 0 0 0.60623 1 17718 17718 6.1918 0.89496 1 13913000 19444 15218 13409 13645 22874 22874 0.06750602511419856 HLPPTPRA 8 Unmodified _HLPPTPRA_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.7568359375 2 444.756144 887.497735 0.60074 0.00026718 1.3524 0.00060148 1.9531 0.00086866 444.7565984752306 73.69 0.58215 73.734 73.361 73.943 0.043976 67 26 3 0 0 0 0.80676 1 40606 40606 2.5775 0 1 11113000 19445 7690 13410 13646 22875 22875 0.04948641682756261 HLPPTPRA 8 Unmodified _HLPPTPRA_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.756144 887.497735 0.65173 0.00028986 2.2508 0.0010011 2.9026 0.0012909 444.7572321059953 73.998 0.46118 73.998 73.688 74.15 0 0.16398 0.00048034 NaN 2.5775 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 505870 19446 7690 13410 13646 0.04948641682756261 HLPPTPRA 8 Unmodified _HLPPTPRA_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.756144 887.497735 0.65378 0.00029077 1.5564 0.00069222 2.2102 0.00098299 444.75682956157317 74.247 0.35948 73.771 73.527 73.887 -0.47588 -0.063306 -0.00013737 NaN 2.5775 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 342770 19447 7690 13410 13646 0.04948641682756261 HLPRLRPTL 9 Unmodified _HLPRLRPTL_ 0 0 0 REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2329711914062 3 368.232975 1101.6771 1.1627 0.00042816 -0.39631 -0.00014593 0.76644 0.00028223 368.23268512607467 26.702 0.34224 23.751 23.579 23.921 -2.9511 41 17 3 0 0 0 0.32235 1 14716 14716 16.149 0.90062 1 22113000 + 19448 26866 13411 13647 22876 22876 0.130325259707206 HLPRLRPTL 9 Unmodified _HLPRLRPTL_ 0 0 0 REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 368.232975 1101.6771 0.13397 4.9332E-05 0.169 6.223E-05 0.30297 0.00011156 368.23301525086606 24.048 0.19904 24.069 23.944 24.143 0.021185 0.15896 0.00034307 NaN 16.149 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 7317000 + 19449 26866 13411 13647 0.130325259707206 HLPRLRPTL 9 Unmodified _HLPRLRPTL_ 0 0 0 REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF REV__ENST00000423178.6_1_10:127408059-127408101:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 368.232975 1101.6771 1.1627 0.00042816 -0.39631 -0.00014593 0.76644 0.00028223 368.23268512607467 26.702 0.34224 23.751 23.579 23.921 -2.9511 -0.15896 -0.00028142 NaN 16.149 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 22113000 + 19450 26866 13411 13647 0.130325259707206 HLPSDFTPA 9 Unmodified _HLPSDFTPA_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7438049316406 2 492.742899 983.471246 0.7 0.00034492 0.64737 0.00031899 1.3474 0.00066391 492.7433417916805 45.909 0.8001 40.954 40.569 41.369 -4.9549 127 53 4 0 0 0 0.06187 1 28180 28180 42.095 7.9921 1 72289000 + 19451 156 13412 13648 22877 22877 -0.02115091999246488 HLPSHKAL 8 Unmodified _HLPSHKAL_ 0 0 0 REV__nc|ENSG00000241370|Q9H633-3|RPP21 REV__nc|ENSG00000241370|Q9H633-3|RPP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7643432617188 2 451.763969 901.513385 0.6821 0.00030815 -0.13437 -6.0704E-05 0.54773 0.00024744 451.7639971896234 44.047 0.30164 39.283 39.05 39.351 -4.7648 28 19 2 0 0 0 0.68937 1 26856 26856 18.146 0 1 8484100 + 19452 29969 13413 13649 22878 22878 0.05868928199799939 HLPTHYYI 8 Unmodified _HLPTHYYI_ 0 0 0 ENST00000470743.4_1_1:161326608-161332330:+|nuORF;nc|ENSG00000143252|Q99643-4|SDHC;nc|ENSG00000143252|Q99643-2|SDHC ENST00000470743.4_1_1:161326608-161332330:+|nuORF ENST00000470743.4_1_1:161326608-161332330:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.271240234375 2 522.269084 1042.52362 -0.49672 -0.00025942 0.64506 0.0003369 0.14834 7.7475E-05 522.2694488782461 55.916 0.48909 55.847 55.626 56.115 -0.068737 93 25 5 0 0 0 0.77907 1 30307 30307 10.183 2.8942 1 174000000 19453 13857 13414 13650 22879 22879 0.004054911343700951 HLPTRDLRG 9 Unmodified _HLPTRDLRG_ 0 0 0 ENST00000204005.13_1_19:41112319-41113358:+|nuORF ENST00000204005.13_1_19:41112319-41113358:+|nuORF ENST00000204005.13_1_19:41112319-41113358:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.2918090820312 2 532.801614 1063.58868 1.1015 0.00058686 -0.23386 -0.0001246 0.8676 0.00046226 532.8015616237757 21.73 0.29565 18.996 18.844 19.14 -2.7348 34 15 3 0 0 0 0.209 1 11576 11576 3.9444 2.4625 1 2938400 19454 10985 13415 13651 22880 22880 0.05942485660239072 HLPWFEVF 8 Unmodified _HLPWFEVF_ 0 0 0 nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000591030.5_1_19:6477238-6481723:-|nuORF;ENST00000592543.5_1_19:6476946-6479902:-|nuORF nc|ENSG00000205744|Q8IV53-2|DENND1C nc|ENSG00000205744|Q8IV53-2|DENND1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8525085449219 3 358.851761 1073.53345 0.95415 0.0003424 -0.52437 -0.00018817 0.42979 0.00015423 358.8516715118061 41.448 0.69681 36.84 36.566 37.262 -4.6079 135 45 4 0 0 0 0.70294 1 24765 24765 16.942 6.1184 1 402890000 19455 10379 13416 13652 22881 22881 -0.00037320860246836673 HLPWQCCNGPC 11 Unmodified _HLPWQCCNGPC_ 0 0 0 REV__ENST00000348227.4_1_2:74650477-74651012:+|nuORF REV__ENST00000348227.4_1_2:74650477-74651012:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2169799804688 3 419.836911 1256.4889 -0.46046 -0.00019332 -0.8782 -0.0003687 -1.3387 -0.00056202 419.83687091576627 40.857 0.64573 40.857 40.659 41.304 0 380 51 9 0 0 0 0.71036 1 21870 21870 1.3296 0 1 304700000 + 19456 25767 13417 13653 22882 22882 -0.1290815933189151 HLQEAYEESK 10 Unmodified _HLQEAYEESK_ 0 0 0 REV__nc|ENSG00000136811|Q5BJF6-9|ODF2 REV__nc|ENSG00000136811|Q5BJF6-9|ODF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5687561035156 3 411.863053 1232.56733 0.089075 3.6687E-05 -0.18817 -7.7501E-05 -0.099098 -4.0815E-05 411.86328248515605 48.733 0.217 48.689 48.555 48.772 -0.043694 19 10 2 0 0 0 0.23862 1 26246 26246 1.9064 0 1 8584300 + 19457 20182 13418 13654 22883 22883 -0.039649889498150515 HLQEIAEDEL 10 Unmodified _HLQEIAEDEL_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5328979492188 3 399.531304 1195.57208 0.076709 3.0648E-05 1.7582 0.00070244 1.8349 0.00073309 399.532734208159 39.806 0.218 39.508 39.392 39.61 -0.29716 16 10 2 0 0 0 0.62068 1 21040 21040 5.7834 0 1 3191100 19458 9863 13419 13655 22884 22884 -0.017881048070194083 HLQELYAL 8 Unmodified _HLQELYAL_ 0 0 0 REV__nc|ENSG00000114956|Q16854-3|DGUOK REV__nc|ENSG00000114956|Q16854-3|DGUOK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7725219726562 2 493.768917 985.523281 0.81158 0.00040073 1.9072 0.00094172 2.7188 0.0013425 493.76993023068576 54.34 0.33078 54.34 54.197 54.528 0 42 14 4 0 0 0 0.40035 1 30144 30144 44.407 2.3125 1 21755000 + 19459 18945 13420 13656 22885 22885 0.029940714145254788 HLQIFSLGY 9 Unmodified _HLQIFSLGY_ 0 0 0 ENST00000557815.1_1_15:70343714-70344902:-|nuORF ENST00000557815.1_1_15:70343714-70344902:-|nuORF ENST00000557815.1_1_15:70343714-70344902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2852783203125 2 539.290017 1076.56548 0.1766 9.5238E-05 -3.5181 -0.0018973 -3.3415 -0.001802 539.2886281853554 77.695 1.4244 77.747 76.802 78.226 0.052452 115 59 3 0 0 0 0.21643 1 42512 42512 21.537 6.6987 1 16716000 19460 15266 13421 13657 22886 22886 0.030260468229016624 HLQKPLAG 8 Unmodified _HLQKPLAG_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MSMS AL20221201_MKP_PDAC_01 4 432.2719116210938 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 45.539 1 40.584 40.084 41.084 -4.9549 0 0 0 0.85111 1 27974 27974 20.871 5.103 1 19461 6438 13422 13658 22887 22887 0.06573525825524484 HLQLKWQRN 9 Unmodified _HLQLKWQRN_ 0 0 0 REV__ENST00000261479.8_1_14:35782236-35783624:+|nuORF REV__ENST00000261479.8_1_14:35782236-35783624:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2327880859375 3 408.231634 1221.67307 NaN NaN NaN NaN NaN NaN NaN 23.142 1 20.363 19.863 20.863 -2.7784 0 0 0 0.6032 1 12503 12503 8.1555 0 1 + 19462 24988 13423 13659 22888 22888 0.07110436477000803 HLRDNCPVT 9 Unmodified _HLRDNCPVT_ 0 0 0 ENSG00000255393|ENST00000642343|OOSP4B ENSG00000255393|ENST00000642343|OOSP4B ENSG00000255393|ENST00000642343|OOSP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1750183105469 3 352.174797 1053.50256 -0.38699 -0.00013629 0.88624 0.00031211 0.49926 0.00017583 352.1750562462603 35.229 0.28881 35.229 35.053 35.342 0 43 14 4 0 0 0 0.55144 1 18681 18681 2.4985 0 1 21317000 19463 10789 13424 13660 22889 22889 -0.02204842236778859 HLRGAGAG 8 Unmodified _HLRGAGAG_ 0 0 0 ENST00000266771.9_1_12:129299613-129308093:-|nuORF ENST00000266771.9_1_12:129299613-129308093:-|nuORF ENST00000266771.9_1_12:129299613-129308093:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.7055358886719 2 369.703912 737.39327 NaN NaN NaN NaN NaN NaN NaN 36.356 1 32.163 31.663 32.663 -4.1928 0 0 0 0.97348 1 21222 21222 5.7604 0 1 19464 11348 13425 13661 22890 22890 0.014069399260506543 HLRHLLLV 8 Unmodified _HLRHLLLV_ 0 0 0 REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF REV__ENST00000344575.4_1_7:72848585-72849218:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3275451660156 2 500.824361 999.634169 1.701 0.00085192 0.0024376 1.2208E-06 1.7035 0.00085314 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.81107 1 72413 72413 0 0 1 7573500 + 19465 25743 13426 13662 22891 22891 0.1343375591328595 HLRKCNAI 8 Unmodified _HLRKCNAI_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7669982910156 2 477.768729 953.522904 0.27666 0.00013218 -3.0205 -0.0014431 -2.7438 -0.0013109 477.76713764159194 48.757 0.23582 48.713 48.555 48.791 -0.04369 19 11 2 0 0 0 0.44122 1 26302 26302 40.449 8.3316 1 2673400 + 19466 17191 13427 13663 22892 22892 0.0442837321368188 HLRPWGQL 8 Unmodified _HLRPWGQL_ 0 0 0 REV__ENSG00000123810|ENST00000243578|B9D2 REV__ENSG00000123810|ENST00000243578|B9D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7822570800781 2 503.782693 1005.55083 0.48515 0.00024441 -1.8968 -0.00095558 -1.4116 -0.00071116 503.7820278108954 86.373 0.26682 86.373 86.293 86.56 0 18 12 2 0 0 0 0.80143 1 47849 47849 5.7604 2.8712 1 313020 + 19467 19404 13428 13664 22893 22893 0.04828019465412581 HLRSYLPLGQ 10 Unmodified _HLRSYLPLGQ_ 0 0 0 REV__ENSG00000138172|ENST00000260743|CALHM2 REV__ENSG00000138172|ENST00000260743|CALHM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3336181640625 2 592.332747 1182.65094 NaN NaN NaN NaN NaN NaN NaN 56.664 1 56.179 55.679 56.679 -0.48554 0 0 0 0.73227 1 30780 30780 15.248 3.6082 1 + 19468 20312 13429 13665 22894 22894 0.06692212008556453 HLRSYLPLGQ 10 Unmodified _HLRSYLPLGQ_ 0 0 0 REV__ENSG00000138172|ENST00000260743|CALHM2 REV__ENSG00000138172|ENST00000260743|CALHM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3308715820312 2 592.332747 1182.65094 -0.23168 -0.00013723 -2.5474 -0.0015089 -2.7791 -0.0016462 592.3328177322904 56.372 0.42346 56.304 56.055 56.479 -0.068741 64 21 7 0 0 0 0.32072 2 30636 30630;30636 26.268 11.43 1 27434000 + 19469 20312 13429 13665 22895;22896 22896 0.06692212008556453 HLRSYLPLGQ 10 Unmodified _HLRSYLPLGQ_ 0 0 0 REV__ENSG00000138172|ENST00000260743|CALHM2 REV__ENSG00000138172|ENST00000260743|CALHM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8276977539062 2 592.332747 1182.65094 -0.23168 -0.00013723 -2.5474 -0.0015089 -2.7791 -0.0016462 592.3328177322904 56.372 0.42346 56.304 56.055 56.479 -0.068741 64 21 7 0 0 0 0.22891 1 30630 30630 15.248 4.4246 1 27434000 + 19470 20312 13429 13665 22897 22897 0.06692212008556453 HLRSYLPLGQ 10 Unmodified _HLRSYLPLGQ_ 0 0 0 REV__ENSG00000138172|ENST00000260743|CALHM2 REV__ENSG00000138172|ENST00000260743|CALHM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3330078125 2 592.332747 1182.65094 1.8745 0.0011103 -1.4367 -0.00085103 0.43774 0.00025929 592.3319278326458 62.624 0.66218 56.448 56.174 56.836 -6.1757 98 33 4 0 0 0 0.32072 2 40307 40307;40442 26.268 6.9062 1 101550000 + 19471 20312 13429 13665 22898;22899 22898 0.06692212008556453 HLRVNHHL 8 Unmodified _HLRVNHHL_ 0 0 0 REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|7|2|sense REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|7|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7911987304688 2 513.291217 1024.56788 1.0209 0.000524 0.30376 0.00015592 1.3246 0.00067992 513.2917551790626 71.538 0.54877 71.577 71.344 71.893 0.039024 40 25 2 0 0 0 0.80044 1 39489 39489 6.3541 0.59368 1 17249000 + 19472 29388 13430 13666 22900 22900 0.0565794007122804 HLSAHITPE 9 Unmodified _HLSAHITPE_ 0 0 0 nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.1076965332031 2 502.761623 1003.50869 0.01048 5.2689E-06 0.93435 0.00046976 0.94483 0.00047502 503.26418570245374 55.358 0.21143 54.88 54.753 54.964 -0.47798 14 9 2 0 0 0 0.209 1 30053 30053 7.2892 0.93513 1 983890 19473 5492 13431 13667 22901 22901 0.007079992663761914 HLSAHITPE 9 Unmodified _HLSAHITPE_ 0 0 0 nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.761623 1003.50869 0.2738 0.00013765 4.0052 0.0020137 4.279 0.0021513 502.76369157304225 55.062 0.31522 54.993 54.823 55.138 -0.068737 0.05672 0.00022602 NaN 7.2892 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1842600 19474 5492 13431 13667 0.007079992663761914 HLSDALVEV 9 Unmodified _HLSDALVEV_ 0 0 0 REV__ENSG00000243646|ENST00000290200|IL10RB REV__ENSG00000243646|ENST00000290200|IL10RB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.7710876464844 2 491.763832 981.513111 1.1141 0.00054786 4.3137 0.0021213 5.4278 0.0026692 491.7659321732136 55.126 0.23625 49.205 49.157 49.393 -5.9211 19 14 2 0 0 0 0.055398 1 35155 35155 43.858 0 1 45683000 + 19475 24474 13432 13668 22902 22902 0.021614636892991257 HLSELNTKL 9 Unmodified _HLSELNTKL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7994384765625 2 527.798206 1053.58186 0.93727 0.00049469 -0.53207 -0.00028082 0.4052 0.00021386 527.7977126104587 36.812 0.2429 32.529 32.422 32.665 -4.2835 26 14 2 0 0 0 0.0039711 1 21530 21530 121.53 35.893 1 8763600 19476 5632 13433 13669 22903 22903 0.05721127988999797 HLSEWKMRM 9 Unmodified _HLSEWKMRM_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5355529785156 3 406.535449 1216.58452 NaN NaN NaN NaN NaN NaN NaN 16.742 1 16.747 16.247 17.247 0.0050564 0 0 0 0.84564 1 8409 8409 1.0715 0.6632 1 + 19477 19763 13434 13670 22904 22904 -0.015110631493598703 HLSFFHFSSF 10 Unmodified _HLSFFHFSSF_ 0 0 0 REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF REV__ENST00000472054.2_1_6:142738255-142764649:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.2999267578125 2 628.298373 1254.58219 0.82446 0.00051801 1.1843 0.00074408 2.0087 0.0012621 628.2990775216452 32.209 0.40046 28.353 28.133 28.533 -3.8562 54 23 3 0 0 0 0.2178 1 18368 18368 32.305 0.26801 1 47853000 + 19478 27511 13435 13671 22905 22905 -0.03491452291132191 HLSHSQARL 9 Unmodified _HLSHSQARL_ 0 0 0 REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1 REV__nc|ENSG00000206199|A6NFN9-1|ANKUB1 MSMS AL20221201_MKP_PDAC_01 4 350.1923828125 3 350.193068 1047.55738 NaN NaN NaN NaN NaN NaN NaN 30.432 1 26.935 26.435 27.435 -3.497 0 0 0 0.36554 1 17177 17177 15.248 2.7169 1 + 19479 24252 13436 13672 22906 22906 0.03549912626135665 HLSIINEYL 9 Unmodified _HLSIINEYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.25 2 551.300581 1100.58661 0.38036 0.00020969 -1.5804 -0.00087128 -1.2 -0.00066158 551.2996020780646 68.749 0.25856 68.268 68.141 68.399 -0.48071 30 11 3 0 0 0 0.1325 1 37646 37646 32.305 3.8186 1 3837500 19480 5256 13437 13673 22907 22907 0.04034012131751297 HLSIINEYL 9 Unmodified _HLSIINEYL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3011474609375 2 551.300581 1100.58661 1.223 0.00067425 -1.4601 -0.00080494 -0.23706 -0.00013069 551.3003494149357 94.431 0.60132 88.255 87.88 88.481 -6.1757 130 34 5 0 0 0 0.019303 2 62505 62505;62631 64.236 11.968 1 86710000 19481 5256 13437 13673 22908;22909 22908 0.04034012131751297 HLSKMPII 8 Unmodified _HLSKMPII_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7789306640625 2 469.778231 937.541908 0.49278 0.0002315 1.0905 0.00051227 1.5832 0.00074377 469.7788330571384 92.772 0.27644 86.596 86.45 86.726 -6.1757 26 17 2 0 0 0 0.80143 1 61338 61338 5.7604 2.8712 1 16940000 + 19482 23146 13438 13674 22910 22910 0.07063909784733369 HLSLSPLAL 9 Unmodified _HLSLSPLAL_ 0 0 0 REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.7867431640625 2 475.78711 949.559667 0.30385 0.00014457 -0.40385 -0.00019215 -0.1 -4.7579E-05 475.78691700137307 69.611 0.292 69.642 69.534 69.826 0.030914 33 14 3 0 0 0 0.013472 1 38264 38264 70.716 3.3717 1 8501300 + 19483 25557 13439 13675 22911 22911 0.08286948311229025 HLSLSPLAL 9 Unmodified _HLSLSPLAL_ 0 0 0 REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 475.78711 949.559667 0.17558 8.3539E-05 -0.37259 -0.00017728 -0.19701 -9.3736E-05 475.7870085682031 70.145 0.30449 69.666 69.515 69.819 -0.47903 0.011922 1.3993E-05 NaN 70.716 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8751300 + 19484 25557 13439 13675 0.08286948311229025 HLSLSPLAL 9 Unmodified _HLSLSPLAL_ 0 0 0 REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF REV__ENST00000326317.10_1_17:78183109-78183520:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 475.78711 949.559667 0.30385 0.00014457 -0.40385 -0.00019215 -0.1 -4.7579E-05 475.78691700137307 69.611 0.292 69.642 69.534 69.826 0.030914 -0.011922 -1.575E-05 NaN 70.716 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 8501300 + 19485 25557 13439 13675 0.08286948311229025 HLSNMGPHPG 10 Unmodified _HLSNMGPHPG_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2694091796875 2 523.74545 1045.47635 0.88803 0.0004651 -0.55839 -0.00029245 0.32964 0.00017265 523.7451108524273 60.415 0.46417 60.415 60.116 60.581 0 49 20 3 0 0 0 0.22149 1 33549 33549 20.454 17.564 1 14850000 19486 1726 13440 13676 22912 22912 -0.044571114082600616 HLSPDVYLL 9 Unmodified _HLSPDVYLL_ 0 0 0 ENST00000481510.1_1_2:132515879-132524290:+|nuORF ENST00000481510.1_1_2:132515879-132524290:+|nuORF ENST00000481510.1_1_2:132515879-132524290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7911987304688 2 528.78985 1055.56515 0.5517 0.00029173 0.035227 1.8628E-05 0.58692 0.00031036 528.789760358872 66.408 0.31741 66.408 66.239 66.557 0 32 13 3 0 0 0 0.2001 1 37017 37017 23.148 1.4018 1 2646800 19487 14084 13441 13677 22913 22913 0.03958627103043 HLSPENRCK 9 Unmodified _HLSPENRCK_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2566528320312 2 542.271832 1082.52911 NaN NaN NaN NaN NaN NaN NaN 36.357 1 36.357 35.857 36.857 0 0 0 0 0.33856 1 19279 19279 23.148 1.4018 1 19488 9979 13442 13678 22914 22914 -0.00885153345461731 HLSQCQNLTL 10 Unmodified _HLSQCQNLTL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7913818359375 2 578.792598 1155.57064 -0.20602 -0.00011924 -1.2155 -0.00070351 -1.4215 -0.00082275 578.7919082935641 33.562 0.47447 33.403 33.098 33.573 -0.15918 49 19 4 0 0 0 0.40136 2 17562 17464;17562 21.537 2.28 1 11395000 19489 1070 13443 13679 22915;22916 22916 -0.0009201737680086808 HLSRKRIY 8 Unmodified _HLSRKRIY_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7969360351562 2 536.82235 1071.63015 0.51809 0.00027812 -0.28642 -0.00015376 0.23167 0.00012436 537.3231225785804 69.173 0.097763 69.204 69.129 69.227 0.030914 5 4 2 0 0 0 8.7369 1 38001 38001 9.3474 0.75416 1 489010 19490 9754 13444 13680 22917 22917 0.09719666419573514 HLSRPQAKI 9 Unmodified _HLSRPQAKI_ 0 0 0 ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5457153320312 3 350.545331 1048.61416 1.043 0.00036561 0.24338 8.5316E-05 1.2864 0.00045093 350.5453859295726 17.135 0.25999 14.549 14.398 14.658 -2.5866 126 49 3 0 0 0 0.15471 2 8862 8862;8973 32.037 0 1 19992000 19491 14283 13445 13681 22918;22919 22918 0.09179960182655122 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2459716796875 2 493.248152 984.481751 -0.3263 -0.00016094 -0.99489 -0.00049073 -1.3212 -0.00065167 493.24758438685035 29.525 0.16552 29.525 29.432 29.597 0 16 11 2 0 0 0 0.17881 1 15294 15294 78.445 14.882 1 7816400 19492 11575 13446 13682 22920 22920 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2481384277344 2 493.248152 984.481751 -0.46283 -0.00022829 -0.97284 -0.00047985 -1.4357 -0.00070814 493.2473979316296 29.769 0.18593 29.769 29.702 29.888 0 22 11 2 0 0 0 0.15234 1 15439 15439 86.121 15.406 1 8225200 19493 11575 13446 13682 22921 22921 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2474365234375 2 493.248152 984.481751 0.81911 0.00040402 -1.1171 -0.00055098 -0.29794 -0.00014696 493.24762558331435 29.457 0.2902 29.376 29.235 29.525 -0.080431 21 17 2 0 0 0 0.17881 1 15239 15239 78.445 4.0484 1 27452000 19494 11575 13446 13682 22922 22922 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2481689453125 2 493.248152 984.481751 0.8353 0.00041201 -0.98737 -0.00048702 -0.15208 -7.5011E-05 493.2475589830248 29.714 0.36692 29.633 29.501 29.868 -0.080429 30 16 2 0 0 0 0.15234 2 15387 15387;15497 86.121 22.558 1 23274000 19495 11575 13446 13682 22923;22924 22923 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2472534179688 2 493.248152 984.481751 NaN NaN NaN NaN NaN NaN NaN 29.57 1 29.6 29.1 30.1 0.030106 0 0 0 0.076215 1 15438 15438 98.807 4.9238 1 19496 11575 13446 13682 22925 22925 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2467956542969 2 493.248152 984.481751 0.58828 0.00029017 -0.87502 -0.0004316 -0.28675 -0.00014144 493.24778816600053 33.051 0.4034 29.195 29.01 29.413 -3.8562 47 25 2 0 0 0 0.1036 2 18978 18854;18978 98.807 28.092 1 30641000 19497 11575 13446 13682 22926;22927 22927 -0.01111064554152108 HLSTFHPF 8 Unmodified _HLSTFHPF_ 0 0 0 ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF ENST00000301788.11_1_11:62532685-62532837:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2488403320312 2 493.248152 984.481751 1.0172 0.00050173 -0.14139 -6.9742E-05 0.87581 0.00043199 493.24818159933886 33.412 0.55989 29.426 29.264 29.824 -3.9853 55 31 2 0 0 0 0.21786 1 19325 19325 67.035 20.114 1 48862000 19498 11575 13446 13682 22928 22928 -0.01111064554152108 HLSVSVYLS 9 Unmodified _HLSVSVYLS_ 0 0 0 REV__ENST00000564238.1_1_16:89727338-89727473:+|nuORF REV__ENST00000564238.1_1_16:89727338-89727473:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7740783691406 2 502.7742 1003.53385 -0.18028 -9.0638E-05 0.46794 0.00023527 0.28767 0.00014463 502.7743126168573 43.407 0.17574 43.096 42.989 43.164 -0.31039 11 8 2 0 0 0 0.2143 1 23115 23115 21.747 1.293 1 6483700 + 19499 28890 13447 13683 22929 22929 0.03222054068965008 HLSVTFFWI 9 Unmodified _HLSVTFFWI_ 0 0 0 nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1 nc|ENSG00000100427|Q15049-2|MLC1 nc|ENSG00000100427|Q15049-2|MLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.875732421875 3 383.874565 1148.60187 1.5424 0.00059207 1.1891 0.00045647 2.7315 0.0010485 383.8751327565937 50.358 0.36315 44.819 44.607 44.971 -5.5391 61 23 3 0 0 0 0.4887 2 31497 31497;31629 8.1555 8.1555 1 117350000 19500 1826 13448 13684 22930;22931 22930 0.03350923719608545 HLSVVSVTV 9 Unmodified _HLSVVSVTV_ 0 0 0 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENST00000393299.6_1_6:71138108-71233862:+|nuORF nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7770385742188 2 470.776742 939.538931 -0.03854 -1.8144E-05 -0.3307 -0.00015568 -0.36924 -0.00017383 470.77669987830944 51.626 0.16725 51.192 51.061 51.228 -0.43367 17 8 3 0 0 0 0.023164 1 27856 27856 60.39 31.903 1 1717900 19501 1343 13449 13685 22932 22932 0.06674357931581198 HLTATAGERA 10 Unmodified _HLTATAGERA_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.770751953125 2 513.76998 1025.52541 0.99638 0.00051191 1.5694 0.00080632 2.5658 0.0013182 513.7708269921176 37.971 0.79764 33.602 33.017 33.814 -4.3689 121 47 4 0 0 0 0.42143 1 22256 22256 20.415 20.415 1 98781000 + 19502 21226 13450 13686 22933 22933 0.013665001523577303 HLTDITLKV 9 Unmodified _HLTDITLKV_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.3116455078125 2 520.310949 1038.60735 -0.029054 -1.5117E-05 0.52271 0.00027197 0.49366 0.00025686 520.3113990666928 48.899 0.21581 48.899 48.736 48.952 0 16 9 2 0 0 0 0.008513 1 26833 26833 99.755 44.982 1 4873200 19503 903 13451 13687 22934 22934 0.08958602511438585 HLTDITLKV 9 Unmodified _HLTDITLKV_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3119506835938 2 520.310949 1038.60735 0.32762 0.00017047 0.70443 0.00036652 1.0321 0.00053699 520.3113963624947 49.076 0.34319 48.704 48.539 48.882 -0.37172 50 16 4 0 0 0 0.0086904 1 26328 26328 107.19 52.413 1 25286000 19504 903 13451 13687 22935 22935 0.08958602511438585 HLTDITLKV 9 Unmodified _HLTDITLKV_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3109741210938 2 520.310949 1038.60735 0.8598 0.00044736 1.1283 0.00058706 1.9881 0.0010344 520.3115593412117 54.72 0.38906 48.854 48.623 49.012 -5.8653 65 23 3 0 0 0 0.0086209 1 34663 34663 89.401 34.627 1 95245000 19505 903 13451 13687 22936 22936 0.08958602511438585 HLTEVLTLV 9 Unmodified _HLTEVLTLV_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.8046875 2 512.8055 1023.59645 -0.088622 -4.5446E-05 -0.8415 -0.00043153 -0.93012 -0.00047697 512.8050659577971 70.074 0.31405 69.595 69.424 69.738 -0.47903 31 17 2 0 0 0 0.013472 2 38280 38280;38384 70.716 26.309 1 6425200 19506 706 13452 13688 22937;22938 22937 0.08559200137131029 HLTPVQPLR 9 Unmodified _HLTPVQPLR_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.817626953125 2 530.816733 1059.61891 0.24854 0.00013193 -0.39753 -0.00021102 -0.14899 -7.9088E-05 530.8169040389711 46.11 0.1749 45.774 45.686 45.86 -0.33664 12 8 2 0 0 0 0.41742 1 24697 24697 11.64 0.81637 1 3725700 + 19507 17712 13453 13689 22939 22939 0.091488443254093 HLTRNFVTF 9 Unmodified _HLTRNFVTF_ 0 0 0 ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8736572265625 3 378.873336 1133.59818 0.14413 5.4606E-05 -0.1065 -4.0351E-05 0.037625 1.4255E-05 378.87332943984075 34.093 0.37673 34.121 33.931 34.308 0.028934 60 17 5 0 0 0 0.15471 2 17918 17918;18027 20.581 0.5148 1 68071000 19508 15565 13454 13690 22940;22941 22940 0.03672253945751436 HLTRNFVTF 9 Unmodified _HLTRNFVTF_ 0 0 0 ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8736267089844 3 378.873336 1133.59818 0.8105 0.00030708 0.62179 0.00023558 1.4323 0.00054266 378.8735618961672 38.631 0.50902 34.263 34.045 34.554 -4.3689 86 32 3 0 0 0 0.28023 2 22724 22724;22857 17.443 7.2921 1 185370000 19509 15565 13454 13690 22942;22943 22942 0.03672253945751436 HLTRNFVTF 9 Unmodified _HLTRNFVTF_ 0 0 0 ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.30859375 2 567.806365 1133.59818 0.46586 0.00026452 0.34523 0.00019602 0.81109 0.00046054 567.8067020850576 38.646 0.38774 34.277 34.074 34.461 -4.3689 59 24 3 0 0 0 0.062454 1 22863 22863 41.956 0.11592 1 44395000 19510 15565 13454 13690 22944 22944 0.03672253945751436 HLTRNFVTF 9 Unmodified _HLTRNFVTF_ 0 0 0 ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF ENST00000581912.1_3_18:72166858-72167202:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.806365 1133.59818 0.32069 0.00018209 -0.69398 -0.00039404 -0.37329 -0.00021195 567.8063790294896 34.099 0.3876 34.128 33.859 34.246 0.028934 -0.074521 -0.00093364 NaN 41.956 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7516700 19511 15565 13454 13690 0.03672253945751436 HLTSEYLQY 9 Unmodified _HLTSEYLQY_ 0 0 0 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.1900329589844 3 385.188989 1152.54514 1.6414 0.00063225 -1.1169 -0.0004302 0.52455 0.00020205 385.1885160382038 35.82 0.59386 31.627 31.336 31.93 -4.1928 127 37 4 0 0 0 0.49272 1 20818 20818 4.897 0.49086 1 42014000 + 19512 23804 13455 13691 22945 22945 -0.025031686275724496 HLTVAEHML 9 Unmodified _HLTVAEHML_ 0 0 0 ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant;ENSG00000198691|ENST00000370225|ABCA4 ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7522583007812 2 525.773677 1049.5328 1.0127 0.00053244 0.086916 4.5698E-05 1.0996 0.00057814 525.7735903023039 47.263 0.49412 42.182 41.919 42.414 -5.0805 53 34 2 0 0 0 0.18118 1 29127 29127 18.135 0 1 39471000 19513 0 13456 13692 22946 22946 0.010015164283913691 HLTVVILYY 9 Unmodified _HLTVVILYY_ 0 0 0 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2171630859375 3 374.21822 1119.63283 NaN NaN NaN NaN NaN NaN NaN 26.337 1 26.364 25.864 26.864 0.026951 0 0 0 0.84369 1 13659 13659 1.1933 0.23107 1 19514 8068 13457 13693 22947 22947 0.07780077033839916 HLTWLCICSGF 11 Unmodified _HLTWLCICSGF_ 0 0 0 ENSG00000151665|ENST00000281382|PIGF;ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF ENSG00000151665|ENST00000281382|PIGF ENSG00000151665|ENST00000281382|PIGF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2052307128906 3 427.203588 1278.58893 1.2919 0.00055191 3.6119 0.001543 4.9038 0.0020949 427.53973525513385 41.934 0.26254 37.299 37.194 37.456 -4.6342 27 16 3 0 0 0 0.68427 1 25238 25238 2.6312 0.37851 1 9560500 19515 6134 13458 13694 22948 22948 -0.039215987264697105 HLTYLSLVFL 10 Unmodified _HLTYLSLVFL_ 0 0 0 ENST00000403313.5_1_22:36877237-36877378:-|nuORF ENST00000403313.5_1_22:36877237-36877378:-|nuORF ENST00000403313.5_1_22:36877237-36877378:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5698547363281 3 402.569142 1204.6856 1.1269 0.00045366 0.033645 1.3544E-05 1.1606 0.00046721 402.56929565553605 83.588 0.38216 77.413 77.146 77.528 -6.1757 30 19 2 0 0 0 0.69626 1 54969 54969 3.3196 0.68841 1 5729400 19516 12906 13459 13695 22949 22949 0.09144035096664993 HLVASEKQHML 11 Unmodified _HLVASEKQHML_ 0 0 0 ENST00000244777.6_2_6:8015884-8027440:-|nuORF;nc|ENSG00000188428|Q8TDH9-3|BLOC1S5;ENSG00000188428|ENST00000397457|BLOC1S5 ENST00000244777.6_2_6:8015884-8027440:-|nuORF ENST00000244777.6_2_6:8015884-8027440:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3038330078125 2 646.842622 1291.67069 0.19285 0.00012475 1.827 0.0011818 2.0199 0.0013065 646.8439388887031 59.587 0.18464 59.097 58.987 59.171 -0.49079 12 8 2 0 0 0 0.29134 1 32417 32417 12.241 1.4411 1 785830 19517 9659 13460 13696 22950 22950 0.03652219957007219 HLVAVFNEY 9 Unmodified _HLVAVFNEY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2820434570312 2 546.279649 1090.54475 -0.30031 -0.00016405 0.19123 0.00010447 -0.10908 -5.959E-05 546.2799296625453 55.972 0.35981 55.972 55.824 56.184 0 60 19 4 0 0 0 0.078417 2 31073 31073;31184 38.151 24.245 1 88362000 19518 3631 13461 13697 22951;22952 22951 0.003094564432331026 HLVAVFNEY 9 Unmodified _HLVAVFNEY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7794799804688 2 546.279649 1090.54475 -0.85765 -0.00046852 0.26865 0.00014676 -0.589 -0.00032176 546.2797802509859 56.501 0.89664 56.015 55.708 56.605 -0.48554 156 54 4 0 0 0 0.040472 3 30591 30591;30625;30729 49.669 40.321 1 269330000 19519 3631 13461 13697 22953;22954;22955 22953 0.003094564432331026 HLVAVFNEY 9 Unmodified _HLVAVFNEY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2809448242188 2 546.279649 1090.54475 1.2399 0.00067735 -0.20481 -0.00011188 1.0351 0.00056547 546.2793799249827 62.99 0.66915 56.814 56.461 57.13 -6.1757 84 34 4 0 0 0 0.045537 3 40528 40528;40662;40796 46.921 33.413 1 397640000 19520 3631 13461 13697 22956;22957;22958 22956 0.003094564432331026 HLVDFDCHL 9 Carbamidomethyl (C) _HLVDFDC(Carbamidomethyl (C))HL_ HLVDFDC(1)HL HLVDFDC(59)HL 0 1 0 ENSG00000100908|ENST00000216799|EMC9;ENST00000558045.2_1_14:24608221-24608440:-|nuORF ENSG00000100908|ENST00000216799|EMC9 ENSG00000100908|ENST00000216799|EMC9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2689819335938 2 578.266216 1154.51788 1.0176 0.00058845 0.58567 0.00033867 1.6033 0.00092712 578.2664248138892 54.484 0.45879 48.618 48.32 48.779 -5.8653 52 28 2 0 0 0 0.024882 1 34438 34438 58.679 7.049 1 37496000 19521 1889 13462 13698 22959 22959 184 -0.05319975439601876 HLVGLAWD 8 Unmodified _HLVGLAWD_ 0 0 0 REV__ENSG00000145495|ENST00000274140|MARCHF6 REV__ENSG00000145495|ENST00000274140|MARCHF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7422485351562 2 455.742702 909.470852 NaN NaN NaN NaN NaN NaN NaN 56.523 1 56.038 55.538 56.538 -0.48554 0 0 0 0.50394 1 30695 30695 40.449 6.2612 1 + 19522 20777 13463 13699 22960 22960 0.012495330715637465 HLVPEVPTV 9 Unmodified _HLVPEVPTV_ 0 0 0 ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7845764160156 2 495.784567 989.554582 0.48126 0.0002386 -0.00060246 -2.9869E-07 0.48066 0.0002383 495.78475167028347 53.504 0.34552 53.504 53.281 53.627 0 25 15 2 0 0 0 0.087258 1 29637 29637 36.044 12.024 1 3510700 19523 6741 13464 13700 22961 22961 0.0593864444861083 HLVPEVPTV 9 Unmodified _HLVPEVPTV_ 0 0 0 ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.78466796875 2 495.784567 989.554582 0.39744 0.00019705 -0.17721 -8.7859E-05 0.22023 0.00010919 495.78452301201264 54.037 0.32052 53.571 53.387 53.707 -0.46664 27 15 2 0 0 0 0.0086179 1 29247 29247 89.427 51.276 1 5272000 19524 6741 13464 13700 22962 22962 0.0593864444861083 HLVSAPII 8 Unmodified _HLVSAPII_ 0 0 0 REV__ENSG00000170396|ENST00000302277|ZNF804A REV__ENSG00000170396|ENST00000302277|ZNF804A MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2637023925781 2 425.263271 848.511988 0.95927 0.00040794 0.5038 0.00021425 1.4631 0.00062219 425.26339891805526 45.827 0.52185 40.873 40.613 41.135 -4.9549 54 34 2 0 0 0 0.50586 1 28301 28301 34.187 0 1 17642000 + 19525 22478 13465 13701 22963 22963 0.08167294111046886 HLVSYHEL 8 Unmodified _HLVSYHEL_ 0 0 0 REV__ENST00000374872.4_2_X:62974367-62974952:-|nuORF REV__ENST00000374872.4_2_X:62974367-62974952:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2586059570312 2 499.258717 996.50288 0.65173 0.00032538 0.049335 2.4631E-05 0.70106 0.00035001 499.25864699157495 50.758 0.21435 50.704 50.608 50.823 -0.053871 25 10 3 0 0 0 0.63229 1 27459 27459 23.148 5.0134 1 2113400 + 19526 26192 13466 13702 22964 22964 0.004489007547249457 HLWAELVFL 9 Unmodified _HLWAELVFL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3191528320312 2 564.316035 1126.61752 4.5328 0.0025579 -0.45055 -0.00025425 4.0823 0.0023037 564.315749534567 99.231 0.377 99.202 99.108 99.485 -0.028282 31 13 5 0 0 0 0.028475 1 55115 55115 74.396 55.139 1 40685000 19527 5318;130;1026 13467 13703 22965 22965 0.05927210236654901 HLWAELVFL 9 Unmodified _HLWAELVFL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3169555664062 2 564.316035 1126.61752 0.99853 0.00056349 -0.62483 -0.0003526 0.37369 0.00021088 564.3157973676799 101.52 0.13751 95.342 95.291 95.429 -6.1757 11 6 2 0 0 0 0.028475 1 68123 68123 74.396 34.439 1 78905000 19528 5318;130;1026 13467 13703 22966 22966 0.05927210236654901 HLWGMFLMMKM 11 Unmodified _HLWGMFLMMKM_ 0 0 0 ENST00000549040.5_1_12:106977470-107075774:+|nuORF;ENST00000357881.8_1_12:106995076-107075774:+|nuORF;ENST00000392842.5_1_12:106976790-107075774:+|nuORF ENST00000549040.5_1_12:106977470-107075774:+|nuORF ENST00000549040.5_1_12:106977470-107075774:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.5622863769531 3 475.561842 1423.6637 NaN NaN NaN NaN NaN NaN NaN 43.449 1 38.684 38.184 39.184 -4.7648 0 0 0 0.91154 1 26395 26395 3.0723 0.44103 1 19529 12119 13468 13704 22967 22967 -0.03118875511108854 HLWLPLPV 8 Unmodified _HLWLPLPV_ 0 0 0 ENST00000416675.5_1_7:100450451-100456466:+|nuORF ENST00000416675.5_1_7:100450451-100456466:+|nuORF ENST00000416675.5_1_7:100450451-100456466:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7954711914062 2 487.794738 973.574923 1.1644 0.00056801 1.5048 0.00073403 2.6692 0.001302 487.7951533130777 101.18 0.061783 95.001 94.956 95.018 -6.1757 5 3 2 0 0 0 0.76859 1 67844 67844 11.114 0.93107 1 52601000 19530 13052 13469 13705 22968 22968 0.08707859899084269 HLWNELEKF 9 Unmodified _HLWNELEKF_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8131713867188 2 608.31148 1214.60841 0.86492 0.00052614 -1.7754 -0.00108 -0.91049 -0.00055386 608.3097505594508 93.955 0.17851 87.779 87.684 87.862 -6.1757 13 9 2 0 0 0 0.0047067 1 62231 62231 118.07 72.369 1 7485000 19531 8304 13470 13706 22969 22969 0.009688168803222652 HLWNSIHGL 9 Unmodified _HLWNSIHGL_ 0 0 0 nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7860717773438 2 538.785433 1075.55631 1.1254 0.00060636 0.80128 0.00043172 1.9267 0.0010381 538.786639247552 49.856 0.22421 49.808 49.703 49.927 -0.048828 15 10 2 0 0 0 0.020973 1 26975 26975 62.573 34.086 1 2222900 19532 9667 13471 13707 22970 22970 0.021556982572292327 HLYAVAELIQ 10 Unmodified _HLYAVAELIQ_ 0 0 0 REV__ENST00000505763.1_1_5:110693774-110785459:+|nuORF REV__ENST00000505763.1_1_5:110693774-110785459:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.218017578125 3 386.21688 1155.62881 0.74628 0.00028823 2.8605 0.0011048 3.6068 0.001393 386.2181354928245 52.552 0.21842 52.493 52.328 52.546 -0.058918 16 10 2 0 0 0 0.69126 1 28468 28468 3.8763 1.3778 1 2176200 + 19533 21124 13472 13708 22971 22971 0.057219875401415266 HLYAVRTKL 9 Unmodified _HLYAVRTKL_ 0 0 0 REV__ENSG00000156469|ENST00000287025|MTERF3 REV__ENSG00000156469|ENST00000287025|MTERF3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.2043762207031 3 367.557348 1099.65021 1.0976 0.00040344 0.11318 4.1599E-05 1.2108 0.00044504 367.5574282961665 82.339 0.6284 76.164 75.694 76.323 -6.1757 52 34 2 0 0 0 0.20728 1 53838 53838 8.7454 3.4485 1 7684500 + 19534 21332 13473 13709 22972 22972 0.10437417359503343 HLYDESSG 8 Unmodified _HLYDESSG_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.1938171386719 2 454.193239 906.371926 1.3203 0.00059967 -2.4071 -0.0010933 -1.0869 -0.00049364 454.1921011306182 40.833 0.30412 36.304 36.145 36.449 -4.5294 28 18 2 0 0 0 0.72953 1 24453 24453 14.582 2.9414 1 6060200 + 19535 21890 13474 13710 22973 22973 -0.08500534683980732 HLYDIHVTV 9 Unmodified _HLYDIHVTV_ 0 0 0 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7918090820312 2 548.792924 1095.57129 0.15087 8.2799E-05 -0.0097673 -5.3602E-06 0.14111 7.7438E-05 548.7927935176514 51.081 0.22174 50.668 50.576 50.798 -0.41351 17 10 2 0 0 0 0.2143 1 27547 27547 21.747 4.8044 1 1794900 19536 10469 13475 13711 22974 22974 0.027331453345595946 HLYERWLYRLF 11 Unmodified _HLYERWLYRLF_ 0 0 0 REV__ENSG00000137252|ENST00000370862|HCRTR2 REV__ENSG00000137252|ENST00000370862|HCRTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.9676818847656 4 399.717493 1594.84087 -0.35908 -0.00014353 -1.9009 -0.00075983 -2.26 -0.00090336 399.71667494854796 36.223 0.18254 36.248 36.144 36.326 0.024971 16 7 3 0 0 0 0.74096 1 19203 19203 0.40827 0.31342 1 2090100 + 19537 20227 13476 13712 22975 22975 0.06724078950924195 HLYETVPVV 9 Unmodified _HLYETVPVV_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7897338867188 2 528.78985 1055.56515 0.4592 0.00024282 -2.2372 -0.001183 -1.778 -0.00094019 529.2896944315339 51.682 0.21648 51.682 51.561 51.777 0 24 9 3 0 0 0 0.027803 1 28567 28567 56.541 34.795 1 4332000 19538 4271 13477 13713 22976 22976 0.03958627103043 HLYGGIILL 9 Unmodified _HLYGGIILL_ 0 0 0 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.8062133789062 2 499.805303 997.596052 0.57232 0.00028605 1.8122 0.00090576 2.3846 0.0011918 499.8065137255473 81.407 0.22482 80.914 80.815 81.04 -0.49248 15 9 2 0 0 0 0.1492 1 44604 44604 28.173 7.302 1 349370 19539 5191 13478 13714 22977 22977 0.09715825207945272 HLYGGIILL 9 Unmodified _HLYGGIILL_ 0 0 0 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.805303 997.596052 0.65906 0.0003294 2.3761 0.0011876 3.0351 0.001517 500.3079339236943 80.794 0.28687 80.852 80.703 80.99 0.057587 -0.031169 0.00030155 NaN 28.173 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1993900 19540 5191 13478 13714 0.09715825207945272 HLYHQAFP 8 Unmodified _HLYHQAFP_ 0 0 0 nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1 nc|ENSG00000198513|Q8WXF7-2|ATL1 nc|ENSG00000198513|Q8WXF7-2|ATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7538452148438 2 506.753601 1011.49265 0.94658 0.00047968 0.27446 0.00013909 1.221 0.00061877 506.75353224187336 88.773 0.69512 82.598 82.206 82.901 -6.1757 110 38 4 0 0 0 0.71616 1 58688 58688 15.768 0 1 79067000 19541 10099 13479 13715 22978 22978 -0.01263662179860603 HLYRAPYFW 9 Unmodified _HLYRAPYFW_ 0 0 0 nc|ENSG00000162594|Q5VWK5-5|IL23R nc|ENSG00000162594|Q5VWK5-5|IL23R nc|ENSG00000162594|Q5VWK5-5|IL23R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5474243164062 3 418.213581 1251.61891 -0.27675 -0.00011574 1.6037 0.0006707 1.327 0.00055496 418.54840521291294 31.218 0.25931 31.248 31.152 31.411 0.030106 20 10 2 0 0 0 0.55144 1 16353 16353 2.4985 1.2837 1 2627200 19542 16321 13480 13716 22979 22979 0.0031684432540259877 HLYWWEFN 8 Unmodified _HLYWWEFN_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7694702148438 2 597.771991 1193.52943 NaN NaN NaN NaN NaN NaN NaN 17.271 1 17.271 16.771 17.771 0 0 0 0 0.97444 1 8496 8496 2.8892 0.58649 1 19543 4368 13481 13717 22980 22980 -0.05959410353943895 HMFFILENI 9 Unmodified _HMFFILENI_ 0 0 0 ENST00000360003.7_1_10:121618406-121618611:-|nuORF ENST00000360003.7_1_10:121618406-121618611:-|nuORF ENST00000360003.7_1_10:121618406-121618611:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3008422851562 2 582.299527 1162.5845 0.1841 0.0001072 2.8025 0.0016319 2.9866 0.0017391 582.3009942408182 78.583 0.26588 78.583 78.432 78.698 0 19 12 2 0 0 0 0.53666 1 43671 43671 5.2307 0.47466 1 479030 19544 12156 13482 13718 22981 22981 0.009712601223100137 HMIDASQNF 9 Unmodified _HMIDASQNF_ 0 0 0 REV__ENSG00000171954|ENST00000269703|CYP4F22 REV__ENSG00000171954|ENST00000269703|CYP4F22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.73779296875 2 531.737291 1061.46003 1.176 0.00062533 -0.1759 -9.3534E-05 1.0001 0.0005318 531.7371463192741 37.676 0.61055 33.307 32.97 33.581 -4.3689 66 36 2 0 0 0 0.13231 1 22169 22169 32.305 5.4218 1 12077000 + 19545 22616 13483 13719 22982 22982 -0.0682423736502642 HMIDASQNF 9 Unmodified _HMIDASQNF_ 0 0 0 REV__ENSG00000171954|ENST00000269703|CYP4F22 REV__ENSG00000171954|ENST00000269703|CYP4F22 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.8124389648438 2 531.737291 1061.46003 1.176 0.00062533 -0.1759 -9.3534E-05 1.0001 0.0005318 531.7371463192741 37.676 0.61055 33.307 32.97 33.581 -4.3689 66 36 2 0 0 0 0.16418 1 22110 22110 25.399 1.3787 1 12077000 + 19546 22616 13483 13719 22983 22983 -0.0682423736502642 HMKEKHNMHF 10 Unmodified _HMKEKHNMHF_ 0 0 0 ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.8782958984375 3 446.877986 1337.61213 0.36566 0.00016341 -0.70587 -0.00031544 -0.34021 -0.00015203 446.87757146070214 58.891 0.53472 58.891 58.56 59.095 0 65 23 3 0 0 0 0.70734 1 32827 32827 2.086 0.17963 1 3824000 19547 10530 13484 13720 22984 22984 -0.04317159889137656 HMLRTEPPGT 10 Unmodified _HMLRTEPPGT_ 0 0 0 nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1;ENST00000526246.5_1_11:66103079-66103478:-|nuORF nc|ENSG00000174791|Q13671-2|RIN1 nc|ENSG00000174791|Q13671-2|RIN1 MSMS AL20221201_MKP_PDAC_01 4 380.1959228515625 3 380.193969 1137.56008 NaN NaN NaN NaN NaN NaN NaN 104.98 1 98.804 98.304 99.304 -6.1757 0 0 0 0.99388 1 70282 70282 0.56317 0 1 19548 8456 13485 13721 22985 22985 -0.0032000003122902854 HMNNGDYTLIA 11 Unmodified _HMNNGDYTLIA_ 0 0 0 nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2;nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2;nc|ENSG00000148053|Q16620-7|NTRK2;nc|ENSG00000148053|Q16620-2|NTRK2 nc|ENSG00000148053|Q16620-6|NTRK2 nc|ENSG00000148053|Q16620-6|NTRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.8604431152344 3 416.860767 1247.56047 -0.55329 -0.00023065 0.8668 0.00036133 0.31351 0.00013069 416.8610911243301 15.005 0.12612 14.991 14.937 15.064 -0.014067 57 40 2 0 0 0 0.74203 1 7324 7324 0.08335 0 1 707780 19549 5892 13486 13722 22986 22986 -0.053406251020078344 HMNQEGRAVIR 11 Unmodified _HMNQEGRAVIR_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.5637817382812 3 437.563055 1309.66734 0.76577 0.00033507 1.3353 0.00058428 2.1011 0.00091936 437.56384257738506 81.124 0.46679 80.632 80.443 80.91 -0.49247 73 27 3 0 0 0 0.58219 1 44385 44385 9.7643 6.1772 1 9989700 19550 3347 13487 13723 22987 22987 0.02488969903015459 HMPWNITR 8 Unmodified _HMPWNITR_ 0 0 0 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 ENSG00000106483|ENST00000436072|SFRP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7658081054688 2 527.766186 1053.51782 NaN NaN NaN NaN NaN NaN NaN 19.269 1 19.269 18.769 19.769 0 0 0 0 0.97444 1 9627 9627 0.79363 0 1 19551 2432 13488 13724 22988 22988 -0.006799306489710943 HMRVHQQL 8 Unmodified _HMRVHQQL_ 0 0 0 REV__ENSG00000165821|ENST00000537235|SALL2 REV__ENSG00000165821|ENST00000537235|SALL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7779541015625 2 524.777085 1047.53962 NaN NaN NaN NaN NaN NaN NaN 17.825 1 17.83 17.33 18.33 0.0050564 0 0 0 0.97444 1 9009 9009 0.69038 0.088878 1 + 19552 22055 13489 13725 22989 22989 0.01774874099646695 HMSQSDPGGF 10 Unmodified _HMSQSDPGGF_ 0 0 0 ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF ENST00000412397.2_1_1:998916-999914:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.71923828125 2 531.719098 1061.42364 0.99998 0.00053171 1.1953 0.00063554 2.1952 0.0011672 531.7195238822619 48.45 0.34886 43.216 43.087 43.436 -5.2339 33 20 2 0 0 0 0.50362 1 30158 30158 16.149 7.5558 1 13798000 19553 12986 13490 13726 22990 22990 -0.10461114261738658 HMSSYIASLTY 11 Unmodified _HMSSYIASLTY_ 0 0 0 nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000205754|G3V0H7|SLCO1B7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.7413940429688 2 636.800088 1271.58562 NaN NaN NaN NaN NaN NaN NaN 65.849 1 65.849 65.349 66.349 0 0 0 0 0.93737 1 36727 36727 8.7454 5.4641 1 19554 16513 13491 13727 22991 22991 -0.03930570299462488 HMTVTKMAEY 10 Unmodified _HMTVTKMAEY_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MSMS AL20221201_MKP_PDAC_01 4 606.2554321289062 2 605.783384 1209.55222 NaN NaN NaN NaN NaN NaN NaN 47.225 1 42.144 41.644 42.644 -5.0805 0 0 0 0.7417 1 29288 29288 14.838 3.198 1 19555 8348 13492 13728 22992 22992 -0.04417895342999145 HMVKDNGWD 9 Unmodified _HMVKDNGWD_ 0 0 0 ENSG00000166793|ENST00000300022|YPEL4;ENST00000532314.5_1_11:57413456-57414597:-|nuORF ENSG00000166793|ENST00000300022|YPEL4 ENSG00000166793|ENST00000300022|YPEL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8309020996094 3 367.830919 1100.47093 -0.010022 -3.6864E-06 -0.063563 -2.338E-05 -0.073585 -2.7067E-05 367.8307358958398 65.033 0.36607 65.033 64.853 65.219 0 30 16 2 0 0 0 0.58865 1 36340 36340 1.0715 0 1 3421700 19556 7531 13493 13729 22993 22993 -0.07528834990739597 HMVVILLI 8 Unmodified _HMVVILLI_ 0 0 0 REV__ENST00000439676.5_1_10:28903583-28905211:+|nuORF REV__ENST00000439676.5_1_10:28903583-28905211:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.3009338378906 2 469.298799 936.583045 1.505 0.00070629 1.8274 0.00085762 3.3324 0.0015639 469.299245316527 103.86 0.19112 97.688 97.566 97.757 -6.1757 77 51 2 0 0 0 0.81107 1 69600 69600 0 0 1 4558200 + 19557 27065 13494 13730 22994 22994 0.11221670824227203 HMYGPDQDH 9 Unmodified _HMYGPDQDH_ 0 0 0 REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.216796875 2 550.216723 1098.41889 NaN NaN NaN NaN NaN NaN NaN 0.28959 1 0.26753 -0.23247 0.76753 -0.022065 0 0 0 0.85737 1 155 155 0.6015 0 1 + 19558 23105 13495 13731 22995 22995 -0.12637998404511563 HMYHSPSLIF 10 Unmodified _HMYHSPSLIF_ 0 0 0 ENST00000444517.5_1_21:34958357-34959841:-|nuORF;ENST00000437395.5_1_21:34958360-34960769:-|nuORF ENST00000444517.5_1_21:34958357-34959841:-|nuORF ENST00000444517.5_1_21:34958357-34959841:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2992553710938 2 616.300059 1230.58556 NaN NaN NaN NaN NaN NaN NaN 79.13 1 79.13 78.63 79.63 0 0 0 0 0.98914 1 43959 43959 1.8442 0.36234 1 19559 13348 13496 13732 22996 22996 -0.020505255087982732 HMYWHRYQGFY 11 Unmodified _HMYWHRYQGFY_ 0 0 0 REV__ENST00000497851.1_1_7:11075344-11076425:+|nuORF REV__ENST00000497851.1_1_7:11075344-11076425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 794.3494873046875 2 794.351145 1586.68774 -0.0077657 -6.1687E-06 0.19129 0.00015195 0.18352 0.00014578 794.3508529038511 78.824 0.23454 78.824 78.716 78.951 0 19 10 3 0 0 0 0.7453 1 43806 43806 0 0 1 721300 + 19560 27982 13497 13733 22997 22997 -0.08213859437182691 HNAGHGGL 8 Unmodified _HNAGHGGL_ 0 0 0 ENST00000594154.5_1_19:52535963-52536005:-|nuORF ENST00000594154.5_1_19:52535963-52536005:-|nuORF ENST00000594154.5_1_19:52535963-52536005:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1869506835938 2 381.685719 761.356885 1.1639 0.00044424 3.3196 0.001267 4.4835 0.0017113 381.68895954536487 18.623 0.54877 16.002 15.548 16.097 -2.6215 79 51 2 0 0 0 0.80975 1 9640 9640 0.79363 0 1 1396600 19561 15745 13498 13734 22998 22998 -0.03333936970659579 HNASQLVS 8 Unmodified _HNASQLVS_ 0 0 0 L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|104|2|anti-sense L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|104|2|anti-sense L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|104|2|anti-sense MSMS AL20221201_MKP_PDAC_01 4 428.2197265625 2 428.219591 854.42463 NaN NaN NaN NaN NaN NaN NaN 15.398 1 12.871 12.371 13.371 -2.5273 0 0 0 0.97444 1 7896 7896 4.3292 0 1 19562 15949 13499 13735 22999 22999 -0.008405318305108267 HNAYVAAWRF 10 Unmodified _HNAYVAAWRF_ 0 0 0 ENSG00000148468|ENST00000378116|FAM171A1;ENST00000477161.1_1_10:15256589-15290704:-|nuORF ENSG00000148468|ENST00000378116|FAM171A1 ENSG00000148468|ENST00000378116|FAM171A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.3115234375 2 617.809439 1233.60433 0.54586 0.00033723 -1.7716 -0.0010945 -1.2258 -0.00075728 617.8082673948172 89.789 0.26791 89.287 89.196 89.464 -0.50171 23 13 2 0 0 0 0.23896 1 49090 49090 3.5965 0 1 808050 19563 5936 13500 13736 23000 23000 -0.0031322782274401106 HNCLVRENKN 10 Unmodified _HNCLVRENKN_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.807861328125 2 613.806571 1225.59859 NaN NaN NaN NaN NaN NaN NaN 86.106 1 86.106 85.606 86.606 0 0 0 0 0.99514 1 47702 47702 1.1933 0 1 19564 2452 13501 13737 23001 23001 -0.005186943966918989 HNDTHGDEF 9 Unmodified _HNDTHGDEF_ 0 0 0 REV__ENSG00000087502|ENST00000360150|ERGIC2 REV__ENSG00000087502|ENST00000360150|ERGIC2 MSMS AL20221201_MKP_PDAC_01 4 357.4756469726562 3 357.80906 1070.40535 NaN NaN NaN NaN NaN NaN NaN 55.727 1 49.805 49.305 50.305 -5.9211 0 0 0 0.82396 1 35502 35502 2.7352 0 1 + 19565 17791 13502 13738 23002 23002 -0.12703532912087212 HNENLEQRL 9 Unmodified _HNENLEQRL_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7611083984375 2 576.791444 1151.56833 0.12599 7.2673E-05 -3.6692 -0.0021164 -3.5432 -0.0020437 576.7893913175941 38.144 0.21017 37.872 37.782 37.992 -0.27133 13 9 2 0 0 0 0.21642 1 20119 20119 3.5965 0.60125 1 557650 19566 1361 13503 13739 23003 23003 -0.0013872979022835352 HNEYQRKF 8 Unmodified _HNEYQRKF_ 0 0 0 REV__MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant REV__MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2791748046875 2 561.277972 1120.54139 0.96912 0.00054395 0.52672 0.00029563 1.4958 0.00083958 561.2785574644287 81.175 0.67687 80.683 80.465 81.141 -0.49247 118 36 4 0 0 0 0.77907 1 44496 44496 10.183 0.83596 1 13371000 + 19567 18848 13504 13740 23004 23004 -0.014057936107519708 HNFGKGCA 8 Unmodified _HNFGKGCA_ 0 0 0 REV__ENSG00000181894|ENST00000598312|ZNF329 REV__ENSG00000181894|ENST00000598312|ZNF329 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.864013671875 2 417.18978 832.365007 NaN NaN NaN NaN NaN NaN NaN 56.197 1 55.711 55.211 56.211 -0.48554 0 0 0 0.93066 1 30506 30506 14.582 5.9884 1 + 19568 23229 13505 13741 23005 23005 -0.057881260455587835 HNFSKLFSM 9 Unmodified _HNFSKLFSM_ 0 0 0 ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.27880859375 2 555.773677 1109.5328 1.1458 0.0006368 1.6702 0.00092824 2.816 0.001565 555.7750356748963 50.633 0.84397 45.088 44.755 45.599 -5.5446 127 52 4 0 0 0 0.43515 1 32055 32055 10.824 1.4408 1 486270000 19569 8346 13506 13742 23006 23006 -0.017584835715979352 HNGGMWPT 8 Unmodified _HNGGMWPT_ 0 0 0 REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF REV__ENST00000484975.5_1_20:44472824-44477348:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.1958618164062 2 450.195062 898.375571 NaN NaN NaN NaN NaN NaN NaN 67.69 1 67.208 66.708 67.708 -0.48218 0 0 0 0.97444 1 36985 36985 0.69038 0.16561 1 + 19570 27764 13507 13743 23007 23007 -0.07768143391137983 HNGTGRNSSWL 11 Unmodified _HNGTGRNSSWL_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MSMS AL20221201_MKP_PDAC_01 4 410.1993713378906 3 410.198771 1227.57448 NaN NaN NaN NaN NaN NaN NaN 15.259 1 12.732 12.232 13.232 -2.5273 0 0 0 0.93669 1 7813 7813 2.2527 0 1 19571 2169 13508 13744 23008 23008 -0.030202115587144363 HNHQVQQKHRY 11 Unmodified _HNHQVQQKHRY_ 0 0 0 REV__ENSG00000178201|ENST00000321039|VN1R1 REV__ENSG00000178201|ENST00000321039|VN1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.252197265625 3 492.251869 1473.73378 -0.37749 -0.00018582 0.17695 8.7106E-05 -0.20054 -9.8714E-05 492.25201046710015 14.861 0.076632 14.83 14.786 14.862 -0.030867 46 20 3 0 0 0 0.73114 1 7246 7246 1.3296 0 1 1440100 + 19572 23027 13509 13745 23009 23009 0.015859217892739252 HNHYSSRFG 9 Unmodified _HNHYSSRFG_ 0 0 0 nc|ENSG00000137869|P11511-2|CYP19A1;ENSG00000137869|ENST00000396402|CYP19A1 nc|ENSG00000137869|P11511-2|CYP19A1 nc|ENSG00000137869|P11511-2|CYP19A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.75341796875 2 552.752121 1103.48969 NaN NaN NaN NaN NaN NaN NaN 74.483 1 74.483 73.983 74.983 0 0 0 0 0.83049 1 41445 41445 3.9444 0.66309 1 19573 4984 13510 13746 23010 23010 -0.05791537304662597 HNIEIEYVPRK 11 Unmodified _HNIEIEYVPRK_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.5897216796875 3 466.589376 1396.7463 -0.23092 -0.00010774 0.47212 0.00022028 0.2412 0.00011254 466.9240087013041 53.853 0.28934 53.786 53.672 53.962 -0.066936 23 14 2 0 0 0 0.70069 1 29239 29239 1.9275 0 1 7002300 19574 7916 13511 13747 23011 23011 0.0637952040892742 HNIEIEYVPRK 11 Unmodified _HNIEIEYVPRK_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.58935546875 3 466.589376 1396.7463 0.49482 0.00023088 0.48791 0.00022765 0.98273 0.00045853 466.5895127576745 82.339 1.2802 76.164 75.602 76.883 -6.1757 191 71 3 0 0 0 0.66968 3 54230 54094;54230;54390 3.5927 1.5087 1 37367000 19575 7916 13511 13747 23012;23013;23014 23013 0.0637952040892742 HNIKFHQLP 9 Unmodified _HNIKFHQLP_ 0 0 0 nc|ENSG00000050426|Q6P1Q0-2|LETMD1;ENSG00000050426|ENST00000262055|LETMD1;nc|ENSG00000050426|Q6P1Q0-7|LETMD1;ENST00000546992.5_1_12:51445876-51446122:+|nuORF;ENST00000552430.5_1_12:51442859-51449674:+|nuORF;ENST00000547877.5_1_12:51442859-51453215:+|nuORF nc|ENSG00000050426|Q6P1Q0-2|LETMD1 nc|ENSG00000050426|Q6P1Q0-2|LETMD1 MSMS AL20221201_MKP_PDAC_01 4 378.2095947265625 3 378.545331 1132.61416 NaN NaN NaN NaN NaN NaN NaN 73.64 1 67.464 66.964 67.964 -6.1757 0 0 0 0.33856 1 48155 48155 16.149 5.3496 1 19576 724 13512 13748 23015 23015 0.05315960182656454 HNINSESYFE 10 Unmodified _HNINSESYFE_ 0 0 0 REV__ENSG00000129467|ENST00000418030|ADCY4 REV__ENSG00000129467|ENST00000418030|ADCY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8480834960938 3 413.847403 1238.52038 0.20675 8.5562E-05 0.39062 0.00016166 0.59737 0.00024722 413.84787169034524 54.978 0.38482 54.5 54.328 54.712 -0.47798 54 18 5 0 0 0 0.62068 1 29779 29779 5.7834 4.3283 1 6529400 + 19577 19667 13513 13749 23016 23016 -0.08933848500942076 HNIVNKDCYK 10 Unmodified _HNIVNKDCYK_ 0 0 0 REV__ENSG00000167825|ENST00000301532|OR5I1 REV__ENSG00000167825|ENST00000301532|OR5I1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3063354492188 2 617.305872 1232.59719 0.21681 0.00013384 0.95441 0.00058916 1.1712 0.000723 617.3061897569199 54.198 0.22155 54.131 54.001 54.223 -0.066936 24 10 3 0 0 0 0.57893 1 29412 29412 12.241 0 1 2977300 + 19578 22255 13514 13750 23017 23017 -0.009803284854569938 HNLKGQVDQAY 11 Unmodified _HNLKGQVDQAY_ 0 0 0 REV__CON__Q32PJ2 REV__CON__Q32PJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.2161254882812 3 424.882559 1271.62585 -0.53731 -0.00022829 0.20791 8.8336E-05 -0.32941 -0.00013996 424.88258336813425 17.842 0.0991 17.842 17.799 17.898 0 27 16 2 0 0 0 0.7326 1 8812 8812 0.40827 0 1 749920 + + 19579 16874 13515 13751 23018 23018 0.0009011241534153669 HNLLKMEY 8 Unmodified _HNLLKMEY_ 0 0 0 REV__ENSG00000136982|ENST00000313655|DSCC1 REV__ENSG00000136982|ENST00000313655|DSCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2477416992188 2 524.268227 1046.5219 0.32709 0.00017148 0.28327 0.00014851 0.61036 0.00031999 524.2684632246006 50.928 0.30419 50.515 50.376 50.68 -0.41351 24 14 2 0 0 0 8.7369 1 27394 27394 8.5933 4.264 1 1833600 + 19580 20205 13516 13752 23019 23019 0.000501140541246059 HNLLTTRN 8 Unmodified _HNLLTTRN_ 0 0 0 ENST00000603865.1_1_11:75507249-75507624:+|nuORF;ENST00000603363.5_1_11:75507249-75511550:+|nuORF;nc|ENSG00000062282|Q96PD7-2|DGAT2;ENSG00000062282|ENST00000228027|DGAT2 ENST00000603865.1_1_11:75507249-75507624:+|nuORF ENST00000603865.1_1_11:75507249-75507624:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7683410644531 2 484.76724 967.519927 NaN NaN NaN NaN NaN NaN NaN 31.779 1 31.809 31.309 32.309 0.030106 0 0 0 0.9489 1 16665 16665 10.824 2.2306 1 19581 848 13517 13753 23020 23020 0.03486821360513659 HNLRGCENTR 10 Unmodified _HNLRGCENTR_ 0 0 0 ENST00000473006.1_1_6:3231803-3231938:-|nuORF ENST00000473006.1_1_6:3231803-3231938:-|nuORF ENST00000473006.1_1_6:3231803-3231938:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7776489257812 2 600.288545 1198.56254 NaN NaN NaN NaN NaN NaN NaN 28.606 1 28.606 28.106 29.106 0 0 0 0 0.95736 1 14784 14784 5.2969 0.39987 1 19582 13917 13518 13754 23021 23021 -0.02880151573549483 HNMDQACLLTM 11 Unmodified _HNMDQACLLTM_ 0 0 0 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.1879577636719 3 426.187609 1275.541 -0.29102 -0.00012403 0.93572 0.00039879 0.6447 0.00027476 426.1880829019433 41.849 0.23019 41.543 41.433 41.663 -0.30682 24 10 3 0 0 0 0.63851 1 22188 22188 4.7159 0 1 16262000 + 19583 30009 13519 13755 23022 23022 -0.0857504070881987 HNMDQACLLTM 11 Unmodified _HNMDQACLLTM_ 0 0 0 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.1885070800781 3 426.187609 1275.541 0.81048 0.00034542 1.2477 0.00053176 2.0582 0.00087717 426.1881801002374 46.015 0.37685 41.06 40.878 41.255 -4.9549 52 24 3 0 0 0 0.68427 1 28351 28351 2.6312 0.19645 1 29174000 + 19584 30009 13519 13755 23023 23023 -0.0857504070881987 HNNCTNQIF 9 Unmodified _HNNCTNQIF_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2743530273438 2 545.740365 1089.46618 0.23756 0.00012965 -0.6635 -0.0003621 -0.42593 -0.00023245 545.7392513515383 80.366 0.29356 80.366 80.225 80.519 0 26 14 2 0 0 0 0.21473 1 44707 44707 4.3292 0.38484 1 834330 + 19585 21984 13520 13756 23024 23024 -0.07497719133516512 HNPAWVLL 8 Unmodified _HNPAWVLL_ 0 0 0 REV__ENSG00000088386|ENST00000376503|SLC15A1 REV__ENSG00000088386|ENST00000376503|SLC15A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2661437988281 2 475.266345 948.518136 NaN NaN NaN NaN NaN NaN NaN 30.754 1 30.651 30.151 31.151 -0.10269 0 0 0 0.93587 1 15968 15968 13.508 1.2672 1 + 19586 17804 13521 13757 23025 23025 0.04181812342562807 HNPDAGWEM 9 Unmodified _HNPDAGWEM_ 0 0 0 REV__ENSG00000165138|ENST00000353234|ANKS6 REV__ENSG00000165138|ENST00000353234|ANKS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7141723632812 2 528.713816 1055.41308 0.20681 0.00010934 0.17467 9.2348E-05 0.38147 0.00020169 529.2151465884298 43.683 0.27943 43.683 43.583 43.863 0 25 14 3 0 0 0 0.54444 1 23746 23746 4.756 0 1 36686000 + 19587 21986 13522 13758 23026 23026 -0.11241096916182869 HNPDAGWEM 9 Unmodified _HNPDAGWEM_ 0 0 0 REV__ENSG00000165138|ENST00000353234|ANKS6 REV__ENSG00000165138|ENST00000353234|ANKS6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 528.713816 1055.41308 0.20681 0.00010934 0.17467 9.2348E-05 0.38147 0.00020169 529.2151465884298 43.683 0.27943 43.683 43.583 43.863 0 0 0 NaN 4.756 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 36686000 + 19588 21986 13522 13758 -0.11241096916182869 HNPDPTYETW 10 Unmodified _HNPDPTYETW_ 0 0 0 REV__nc|ENSG00000124155|Q969N2-3|PIGT REV__nc|ENSG00000124155|Q969N2-3|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8504028320312 3 420.515765 1258.52547 0.081586 3.4308E-05 1.2126 0.00050993 1.2942 0.00054424 420.8507582628038 34.299 0.23197 34.327 34.224 34.456 0.027401 21 10 3 0 0 0 0.69064 1 18085 18085 1.9064 0.57673 1 2295400 + 19589 19420 13523 13759 23027 23027 -0.09345544638335923 HNPNSCFINN 10 Unmodified _HNPNSCFINN_ 0 0 0 REV__ENST00000564725.1_1_15:74290377-74317280:+|nuORF REV__ENST00000564725.1_1_15:74290377-74317280:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1711730957031 3 387.169823 1158.48764 0.042447 1.6434E-05 2.6807 0.0010379 2.7231 0.0010543 387.1706965185116 80.69 0.21173 80.69 80.519 80.731 0 15 9 2 0 0 0 0.69917 1 44814 44814 1.4551 0 1 626620 + 19590 20474 13524 13760 23028 23028 -0.08526334104772104 HNQGNDDSHR 10 Unmodified _HNQGNDDSHR_ 0 0 0 REV__ENSG00000106392|ENST00000436587|C1GALT1 REV__ENSG00000106392|ENST00000436587|C1GALT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 590.7754516601562 2 590.247931 1178.48131 1.0065 0.00059411 -1.6529 -0.00097562 -0.64636 -0.00038151 590.2470524513631 61.677 0.34512 55.501 55.309 55.654 -6.1757 33 17 3 0 0 0 0.23227 1 39794 39794 10.824 4.6181 1 24011000 + 19591 18504 13525 13761 23029 23029 -0.10079136011972878 HNQSDDPVI 9 Unmodified _HNQSDDPVI_ 0 0 0 REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7382202148438 2 512.738345 1023.46214 0.24106 0.0001236 -1.8546 -0.0009509 -1.6135 -0.00082731 512.7378618795551 39.822 0.23228 39.822 39.7 39.932 0 18 11 2 0 0 0 0.39863 1 21396 21396 12.532 3.1841 1 2066700 + 19592 26671 13526 13762 23030 23030 -0.04865485355583132 HNQSDDPVI 9 Unmodified _HNQSDDPVI_ 0 0 0 REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.738345 1023.46214 0.24106 0.0001236 -1.8546 -0.0009509 -1.6135 -0.00082731 512.7378618795551 39.822 0.23228 39.822 39.7 39.932 0 0 0 NaN 12.532 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2066700 + 19593 26671 13526 13762 -0.04865485355583132 HNSLSVTIF 9 Unmodified _HNSLSVTIF_ 0 0 0 REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF REV__ENST00000475645.1_1_6:106633518-106633809:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8025817871094 2 509.271824 1016.5291 -0.18424 -9.383E-05 0.83005 0.00042272 0.64581 0.00032889 509.27210258067 51.194 0.21564 50.781 50.64 50.856 -0.41351 19 10 2 0 0 0 0.20139 1 27538 27538 6.7232 0.51738 1 6881000 + 19594 27576 13527 13763 23031 23031 0.021491699261900976 HNTYASQRWRR 11 Unmodified _HNTYASQRWRR_ 0 0 0 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.5854187011719 3 492.251869 1473.73378 -0.50802 -0.00025008 0.0399 1.9641E-05 -0.46812 -0.00023043 492.25178885025474 14.85 0.07387 14.85 14.813 14.887 0 41 18 3 0 0 0 0.69838 1 7087 7087 4.4062 3.0765 1 1565500 19595 1027 13528 13764 23032 23032 0.01585921789251188 HNTYASQRWRR 11 Unmodified _HNTYASQRWRR_ 0 0 0 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 492.251869 1473.73378 -0.37749 -0.00018582 0.17695 8.7106E-05 -0.20054 -9.8714E-05 492.25201046710015 14.861 0.076632 14.83 14.786 14.862 -0.030867 -0.006099 0.00015292 NaN 4.4062 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1440100 19596 1027 13528 13764 0.01585921789251188 HNTYASQRWRR 11 Unmodified _HNTYASQRWRR_ 0 0 0 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 ENSG00000070388|ENST00000215530|FGF22 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 492.251869 1473.73378 0.31695 0.00015602 -0.66361 -0.00032666 -0.34667 -0.00017065 492.5855729113166 14.823 0.095722 14.829 14.772 14.868 0.0057774 -0.0071397 -0.0010884 NaN 4.4062 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1305200 19597 1027 13528 13764 0.01585921789251188 HNVKDEEA 8 Unmodified _HNVKDEEA_ 0 0 0 REV__nc|ENSG00000002079|Q9H6N6|MYH16 REV__nc|ENSG00000002079|Q9H6N6|MYH16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2183532714844 2 471.219788 940.425024 NaN NaN NaN NaN NaN NaN NaN 15.658 1 15.644 15.144 16.144 -0.014067 0 0 0 0.97444 1 7697 7697 0.69038 0 1 + 19598 29478 13529 13765 23033 23033 -0.04757156901337112 HPAAGKGAV 9 Unmodified _HPAAGKGAV_ 0 0 0 ENST00000394071.6_2_14:74184720-74184954:-|nuORF ENST00000394071.6_2_14:74184720-74184954:-|nuORF ENST00000394071.6_2_14:74184720-74184954:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2274169921875 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 17.725 1 17.73 17.23 18.23 0.0050564 0 0 0 0.84369 1 8954 8954 2.3027 1.5091 1 19599 12724 13530 13766 23034 23034 0.02892379757327035 HPAAKMIVM 9 Oxidation (M) _HPAAKMIVM(Oxidation (M))_ HPAAKMIVM(1) HPAAKM(-39)IVM(39) 0 0 1 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.267822265625 2 507.267173 1012.51979 -0.20238 -0.00010266 0.44731 0.0002269 0.24493 0.00012424 507.26774037108913 25.671 0.77894 22.72 22.241 23.02 -2.9511 125 46 5 0 0 0 0.031062 2 13829 13829;13944 54.774 34.133 2 64880000 19600 6443 13531 13767 23035;23036 23035 1130 0.014033620446753048 HPAAKMIVM 9 Unmodified _HPAAKMIVM_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2700805664062 2 499.269716 996.524878 1.2252 0.00061171 -0.35132 -0.0001754 0.87388 0.0004363 499.2694902504046 37.878 0.51331 33.509 33.252 33.765 -4.3689 57 30 2 0 0 0 0.047196 3 22388 22135;22254;22388 46.021 29.883 1 169910000 19601 6443 13531 13768 23037;23038;23039 23039 0.026476659072841358 HPAAMELVL 9 Oxidation (M) _HPAAM(Oxidation (M))ELVL_ HPAAM(1)ELVL HPAAM(47)ELVL 0 0 1 nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A nc|ENSG00000137177|Q9H1H9-3|KIF13A nc|ENSG00000137177|Q9H1H9-3|KIF13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7615661621094 2 498.762778 995.511002 0.20084 0.00010017 -1.0471 -0.00052224 -0.84623 -0.00042207 498.76181413027194 46.944 0.28251 46.944 46.799 47.081 0 22 13 2 0 0 0 0.045537 1 25681 25681 46.921 18.434 1 5872100 19602 4908 13532 13769 23040 23040 892 0.01306711679842465 HPACSASY 8 Unmodified _HPACSASY_ 0 0 0 ENST00000357066.7_1_19:2072916-2073039:-|nuORF ENST00000357066.7_1_19:2072916-2073039:-|nuORF ENST00000357066.7_1_19:2072916-2073039:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.1736755371094 2 418.173795 834.333038 NaN NaN NaN NaN NaN NaN NaN 86.621 1 86.621 86.121 87.121 0 0 0 0 0.97444 1 47976 47976 0.79363 0 1 19603 12107 13533 13770 23041 23041 -0.0907553851936882 HPADASLAVSF 11 Unmodified _HPADASLAVSF_ 0 0 0 ENSG00000112787|ENST00000680143|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8180541992188 2 557.780013 1113.54547 0.68381 0.00038142 -1.5113 -0.00084299 -0.82752 -0.00046157 557.7790282765699 53.66 0.23431 53.208 53.065 53.3 -0.45173 16 11 2 0 0 0 0.27394 1 29089 29089 21.537 7.6309 1 1092300 19604 2922 13534 13771 23042 23042 -0.006757489077244827 HPADGYAF 8 Unmodified _HPADGYAF_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.19580078125 2 439.195585 876.376617 -0.24628 -0.00010817 -0.20755 -9.1157E-05 -0.45383 -0.00019932 439.19509801472884 33.401 0.19067 33.401 33.243 33.434 0 19 9 3 0 0 0 0.41521 1 17502 17502 42.968 22.097 1 5353900 19605 6120 13535 13772 23043 23043 -0.06651605750573708 HPADGYAF 8 Unmodified _HPADGYAF_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 438.7289123535156 2 439.195585 876.376617 1.3489 0.00059243 0.60029 0.00026364 1.9492 0.00085607 439.1961647724701 37.198 0.53178 32.915 32.682 33.213 -4.2835 48 31 3 0 0 0 8.7369 1 21848 21848 34.187 13.316 1 10113000 19606 6120 13535 13772 23044 23044 -0.06651605750573708 HPADMQLVL 9 Oxidation (M) _HPADM(Oxidation (M))QLVL_ HPADM(1)QLVL HPADM(52)QLVL 0 0 1 ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.266357421875 2 520.265684 1038.51682 0.18159 9.4475E-05 -0.029571 -1.5385E-05 0.15202 7.909E-05 520.2656575365351 43.563 0.36528 43.563 43.341 43.706 0 46 17 3 0 0 0 0.03568 2 23593 23593;23702 52.268 30.522 1 96297000 19607 10018 13536 13773 23045;23046 23045 1627 -0.0009018980849759828 HPADMQLVL 9 Oxidation (M) _HPADM(Oxidation (M))QLVL_ HPADM(1)QLVL HPADM(44)QLVL 0 0 1 ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.264892578125 2 520.265684 1038.51682 0.18774 9.7674E-05 -0.16246 -8.452E-05 0.025283 1.3154E-05 520.2652997243923 43.822 0.25764 43.822 43.689 43.947 0 24 14 2 0 0 0 0.05447 1 23810 23810 43.858 22.112 1 50491000 19608 10018 13536 13773 23047 23047 1627 -0.0009018980849759828 HPADMQLVL 9 Oxidation (M) _HPADM(Oxidation (M))QLVL_ HPADM(1)QLVL HPADM(44)QLVL 0 0 1 ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2684326171875 2 520.265684 1038.51682 1.0673 0.00055528 1.7857 0.00092903 2.853 0.0014843 520.2668804461326 48.53 0.4091 43.134 42.962 43.371 -5.3961 48 24 3 0 0 0 0.05447 1 30227 30227 43.858 9.7559 1 47289000 19609 10018 13536 13773 23048 23048 1627 -0.0009018980849759828 HPADMQLVL 9 Unmodified _HPADMQLVL_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2689819335938 2 512.268227 1022.5219 1.3804 0.00070715 -0.60793 -0.00031142 0.7725 0.00039573 512.2684482815381 62.909 0.63277 56.733 56.442 57.075 -6.1757 118 32 6 0 0 0 0.022193 2 40540 40540;40680 61.357 32.871 1 160420000 19610 10018 13536 13774 23049;23050 23049 0.011541140541226014 HPADNGLTL 9 Unmodified _HPADNGLTL_ 0 0 0 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2410888671875 2 469.240524 936.466495 0.58209 0.00027314 0.64215 0.00030132 1.2242 0.00057446 469.2408511636604 37.032 0.30365 37.032 36.897 37.201 0 31 14 3 0 0 0 0.042911 1 19659 19659 48.346 21.462 1 3443600 19611 7394 13537 13775 23051 23051 -0.004279761419979877 HPADNGLTLEL 11 Unmodified _HPADNGLTLEL_ 0 0 0 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 ENSG00000165813|ENST00000369287|CCDC186 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.3037719726562 2 590.303852 1178.59315 0.36353 0.00021459 -0.30726 -0.00018138 0.05627 3.3217E-05 590.3031764505275 59.775 0.2312 59.775 59.671 59.902 0 18 10 3 0 0 0 0.26767 1 33320 33320 28.495 8.0409 1 1877600 19612 7394 13538 13776 23052 23052 0.010999052924717034 HPADSVVSV 9 Unmodified _HPADSVVSV_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7349548339844 2 455.735074 909.455596 NaN NaN NaN NaN NaN NaN NaN 30.38 1 30.38 29.88 30.88 0 0 0 0 0.043758 1 15782 15782 60.39 15.983 1 19613 1156 13539 13777 23053 23053 -0.0027537851626675547 HPADSVVSV 9 Unmodified _HPADSVVSV_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7360229492188 2 455.735074 909.455596 1.0404 0.00047413 1.1057 0.00050389 2.146 0.00097803 455.735527929668 34.839 0.37394 30.743 30.599 30.973 -4.0951 37 21 2 0 0 0 0.016184 2 20072 20072;20213 67.344 25.249 1 17253000 19614 1156 13539 13777 23054;23055 23054 -0.0027537851626675547 HPADSVVSVL 10 Unmodified _HPADSVVSVL_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2770385742188 2 512.277106 1022.53966 NaN NaN NaN NaN NaN NaN NaN 50.861 1 50.861 50.361 51.361 0 0 0 0 0.38297 1 28059 28059 32.305 17.467 1 19615 1156 13540 13778 23056 23056 0.02929152580634309 HPADWAWCQ 9 Unmodified _HPADWAWCQ_ 0 0 0 REV__ENST00000562350.1_1_16:58541595-58541769:+|nuORF REV__ENST00000562350.1_1_16:58541595-58541769:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1114.62890625 1 1113.45708 1112.4498 0.57904 0.00064473 -2.2633 -0.0025201 -1.6843 -0.0018754 1114.457420941933 25.03 0.13286 25.055 24.998 25.13 0.024427 8 5 2 0 0 0 0.53666 1 12976 12976 5.2307 0.90143 1 13871000 + 19616 28857 13541 13779 23057 23057 -0.10192800299614646 HPADWAWCQ 9 Unmodified _HPADWAWCQ_ 0 0 0 REV__ENST00000562350.1_1_16:58541595-58541769:+|nuORF REV__ENST00000562350.1_1_16:58541595-58541769:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1113.119750976562 1 1113.45708 1112.4498 0.57904 0.00064473 -2.2633 -0.0025201 -1.6843 -0.0018754 1114.457420941933 25.03 0.13286 25.055 24.998 25.13 0.024427 8 5 2 0 0 0 0.21798 1 12959 12959 2.3027 0.4585 1 13871000 + 19617 28857 13541 13779 23058 23058 -0.10192800299614646 HPAEPPVAF 9 Unmodified _HPAEPPVAF_ 0 0 0 nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENST00000591851.5_1_17:76047306-76073478:+|nuORF nc|ENSG00000078687|Q9HCJ0-1|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7487182617188 2 482.747985 963.481417 -0.13342 -6.4409E-05 1.9519 0.00094228 1.8185 0.00087787 482.7490658757408 45.052 0.28667 45.052 44.943 45.23 0 24 14 2 0 0 0 0.013472 1 24554 24554 70.716 38.41 1 3670800 19618 1250 13542 13780 23059 23059 -0.0017848427399940192 HPAEPPVAF 9 Unmodified _HPAEPPVAF_ 0 0 0 nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENST00000591851.5_1_17:76047306-76073478:+|nuORF nc|ENSG00000078687|Q9HCJ0-1|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.7782592773438 2 482.747985 963.481417 1.2088 0.00058353 0.10397 5.0194E-05 1.3127 0.00063372 482.7484565508253 50.154 0.37106 44.615 44.452 44.824 -5.5391 29 23 2 0 0 0 0.047039 1 31563 31563 53.576 19.473 1 13000000 19619 1250 13542 13780 23060 23060 -0.0017848427399940192 HPAEVKSLIQY 11 Unmodified _HPAEVKSLIQY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.8515014648438 2 642.85097 1283.68739 -0.37141 -0.00023876 0.20902 0.00013437 -0.1624 -0.0001044 642.8509355564571 41.517 0.17225 41.214 41.09 41.262 -0.30304 17 7 3 0 0 0 0.0039716 1 21989 21989 77.049 44.263 1 4574300 19620 2180 13543 13781 23061 23061 0.056890441146151716 HPAEVKSLIQY 11 Unmodified _HPAEVKSLIQY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8510131835938 2 642.85097 1283.68739 0.52672 0.0003386 0.032943 2.1177E-05 0.55966 0.00035978 642.8510929294108 46.004 0.38707 41.049 40.789 41.176 -4.9549 62 25 3 0 0 0 1.0851E-08 2 28361 28224;28361 109.15 59.592 1 16253000 19621 2180 13543 13781 23062;23063 23063 0.056890441146151716 HPAEVKSLIQY 11 Unmodified _HPAEVKSLIQY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.9033508300781 3 428.903072 1283.68739 0.82579 0.00035418 0.29545 0.00012672 1.1212 0.0004809 428.90361233260205 45.934 0.37293 40.979 40.789 41.162 -4.9549 61 24 3 0 0 0 0.15156 2 28247 28247;28389 23.964 18.096 1 23729000 19622 2180 13543 13781 23064;23065 23064 0.056890441146151716 HPAFPSLIL 9 Unmodified _HPAFPSLIL_ 0 0 0 REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7904357910156 2 497.789653 993.564752 0.66902 0.00033303 0.42219 0.00021016 1.0912 0.00054319 497.790150256609 82.701 0.81985 76.525 75.97 76.79 -6.1757 63 45 2 0 0 0 0.078417 1 54183 54183 38.151 0 1 9910100 + 19623 26433 13544 13782 23066 23066 0.06771252173848552 HPAFPSLIL 9 Unmodified _HPAFPSLIL_ 0 0 0 REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7894897460938 2 497.789653 993.564752 1.0404 0.00051788 -0.12625 -6.2847E-05 0.9141 0.00045503 497.78963830155817 83.318 1.1415 77.142 76.677 77.818 -6.1757 97 60 2 0 0 0 0.019979 3 54774 54774;54900;55114 63.563 0 1 12011000 + 19624 26433 13544 13782 23067;23068;23069 23067 0.06771252173848552 HPAFPSLIL 9 Unmodified _HPAFPSLIL_ 0 0 0 REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF REV__ENST00000393950.6_2_7:100210304-100210355:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.7908630371094 2 497.789653 993.564752 NaN NaN NaN NaN NaN NaN NaN 85.941 1 79.765 79.265 80.265 -6.1757 0 0 0 0.060495 1 56638 56638 53.576 0 1 + 19625 26433 13544 13782 23070 23070 0.06771252173848552 HPAGCMSQF 9 Carbamidomethyl (C),Oxidation (M) _HPAGC(Carbamidomethyl (C))M(Oxidation (M))SQF_ HPAGC(1)MSQF HPAGCM(1)SQF HPAGC(54)MSQF HPAGCM(54)SQF 0 1 1 ENSG00000257093|ENST00000536163|DENND11 ENSG00000257093|ENST00000536163|DENND11 ENSG00000257093|ENST00000536163|DENND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7112426757812 2 525.710219 1049.40589 1.2001 0.00063088 -0.25253 -0.00013276 0.94753 0.00049813 525.7103473100913 20.597 0.37009 17.904 17.666 18.036 -2.693 38 21 3 0 0 0 0.03327 1 10922 10922 53.576 30.427 1 2319300 19626 10807 13545 13783 23071 23071 953 1727 -0.11684152788234314 HPAGCMSQF 9 Carbamidomethyl (C) _HPAGC(Carbamidomethyl (C))MSQF_ HPAGC(1)MSQF HPAGC(64)MSQF 0 1 0 ENSG00000257093|ENST00000536163|DENND11 ENSG00000257093|ENST00000536163|DENND11 ENSG00000257093|ENST00000536163|DENND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7149658203125 2 517.712762 1033.41097 0.72612 0.00037592 0.85871 0.00044457 1.5848 0.00082049 517.7135269170103 32.685 0.30361 28.829 28.67 28.974 -3.8562 22 15 2 0 0 0 0.019979 1 18678 18678 63.563 33.338 1 7658700 19627 10807 13545 13784 23072 23072 953 -0.10439848925625483 HPAGVQLIF 9 Unmodified _HPAGVQLIF_ 0 0 0 ENST00000376014.7_1_1:15537009-15541518:+|nuORF ENST00000376014.7_1_1:15537009-15541518:+|nuORF ENST00000376014.7_1_1:15537009-15541518:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2789306640625 2 491.279452 980.544351 0.22863 0.00011232 -0.12183 -5.9854E-05 0.1068 5.2467E-05 491.27940810354403 65.989 0.29221 65.505 65.337 65.629 -0.48428 23 12 3 0 0 0 0.12841 1 36019 36019 30.225 1.1432 1 3612000 19628 12486 13546 13785 23073 23073 0.05330081514057383 HPAHAPQISY 10 Unmodified _HPAHAPQISY_ 0 0 0 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.779296875 2 560.780348 1119.54614 NaN NaN NaN NaN NaN NaN NaN 26.193 1 26.193 25.693 26.693 0 0 0 0 0.71851 1 13457 13457 15.847 10.115 1 19629 1048 13547 13786 23074 23074 -0.008849094679817426 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2928466796875 2 535.293091 1068.57163 -0.34574 -0.00018507 0.29839 0.00015972 -0.047357 -2.535E-05 535.2930360377806 33.743 0.30831 33.743 33.6 33.908 0 46 15 4 0 0 0 0.17124 1 17734 17734 21.59 9.3495 1 12731000 19630 3250 13548 13787 23075 23075 0.04008565054414248 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1979064941406 3 357.197819 1068.57163 -0.53951 -0.00019271 0.73335 0.00026195 0.19384 6.924E-05 357.19785174209744 33.783 0.25965 33.783 33.648 33.908 0 28 12 3 0 0 0 0.19361 1 17771 17771 23.79 16.688 1 3522400 19631 3250 13548 13787 23076 23076 0.04008565054414248 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2937622070312 2 535.293091 1068.57163 -0.31829 -0.00017038 1.2514 0.00066984 0.93306 0.00049946 535.2939265125931 33.952 0.32642 33.76 33.563 33.89 -0.19132 38 12 4 0 0 0 0.17124 2 17672 17672;17772 21.59 0 1 12229000 19632 3250 13548 13787 23077;23078 23077 0.04008565054414248 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.1975708007812 3 357.197819 1068.57163 -0.28328 -0.00010119 0.14378 5.1358E-05 -0.1395 -4.9828E-05 357.1977223799023 33.963 0.32642 33.772 33.563 33.89 -0.19131 20 12 3 0 0 0 0.13231 1 17734 17734 29.841 12.728 1 1899700 19633 3250 13548 13787 23079 23079 0.04008565054414248 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1982727050781 3 357.197819 1068.57163 1.9015 0.0006792 -0.53217 -0.00019009 1.3693 0.00048911 357.1976463592307 37.643 0.54818 33.274 32.953 33.501 -4.3689 84 32 4 0 0 0 0.05483 2 22156 22025;22156 43.772 17.504 1 54804000 19634 3250 13548 13787 23080;23081 23081 0.04008565054414248 HPAIALREY 9 Unmodified _HPAIALREY_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 535.293091 1068.57163 0.09746 5.2169E-05 0.00025685 1.3749E-07 0.097717 5.2307E-05 535.2934503591894 33.698 0.16744 33.726 33.625 33.792 0.028931 -0.01673 -0.00089502 NaN 21.59 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 669160 19635 3250 13548 13787 0.04008565054414248 HPALFLSTY 9 Unmodified _HPALFLSTY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2785034179688 2 524.776742 1047.53893 0.26266 0.00013784 0.28565 0.0001499 0.54831 0.00028774 524.7768980569308 60.841 0.41116 60.798 60.633 61.044 -0.04351 66 20 4 0 0 0 0.040472 2 33149 33149;33247 49.669 26.52 1 40147000 19636 10661 13549 13788 23082;23083 23082 0.01706357931561797 HPALFLSTY 9 Unmodified _HPALFLSTY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7769775390625 2 524.776742 1047.53893 0.54819 0.00028768 1.3008 0.00068265 1.849 0.00097033 524.7776269842008 66.616 0.79189 60.441 59.977 60.769 -6.1757 75 44 3 0 0 0 0.10925 1 43321 43321 32.117 15.175 1 62802000 19637 10661 13549 13788 23084 23084 0.01706357931561797 HPALQDEVY 9 Unmodified _HPALQDEVY_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2581176757812 2 536.258914 1070.50327 -0.44564 -0.00023898 -3.775 -0.0020244 -4.2206 -0.0022634 536.2570784658795 34.236 0.33714 34.236 34.123 34.46 0 31 17 3 0 0 0 0.047196 1 18088 18088 46.021 11.619 1 3349500 19638 7937 13550 13789 23085 23085 -0.029157243160852886 HPALQDEVY 9 Unmodified _HPALQDEVY_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.258914 1070.50327 -0.33859 -0.00018157 -5.3995 -0.0028955 -5.7381 -0.0030771 536.2561259493657 34.397 0.26603 34.206 34.046 34.312 -0.19131 -0.040255 -0.00083198 NaN 46.021 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2096400 19639 7937 13550 13789 -0.029157243160852886 HPALSIPEL 9 Unmodified _HPALSIPEL_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7769775390625 2 488.776742 975.538931 0.34659 0.0001694 0.516 0.00025221 0.86258 0.00042161 488.77695504975003 66.586 0.4324 66.103 65.821 66.254 -0.48323 57 20 4 0 0 0 0.0094915 2 36277 36277;36376 81.864 21.474 1 9748800 19640 1900 13551 13790 23086;23087 23086 0.05018357931567152 HPALSMPMQ 9 Unmodified _HPALSMPMQ_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2394104003906 2 506.241155 1010.46776 NaN NaN NaN NaN NaN NaN NaN 85.497 1 84.995 84.495 85.495 -0.5015 0 0 0 0.79771 1 46789 46789 6.2058 0.44535 1 19641 3285 13552 13791 23088 23088 -0.03705801369096662 HPAPLCTIRTL 11 Carbamidomethyl (C) _HPAPLC(Carbamidomethyl (C))TIRTL_ HPAPLC(1)TIRTL HPAPLC(95)TIRTL 0 1 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8533325195312 2 639.85299 1277.69143 0.37198 0.00023802 0.10714 6.8554E-05 0.47912 0.00030657 639.852826242707 43.613 0.19404 43.597 43.483 43.677 -0.015667 12 8 2 0 0 0 5.2027E-06 1 23377 23377 94.909 65.827 1 14341000 19642 5783 13553 13792 23089 23089 590 0.06368810336698516 HPAPLCTIRTL 11 Carbamidomethyl (C) _HPAPLC(Carbamidomethyl (C))TIRTL_ HPAPLC(1)TIRTL HPAPLC(110)TIRTL 0 1 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8529663085938 2 639.85299 1277.69143 0.74037 0.00047373 -0.11004 -7.0408E-05 0.63033 0.00040332 639.8529071124098 48.572 0.36118 43.176 43.01 43.371 -5.3961 50 21 3 0 0 0 1.1867E-08 2 30214 30214;30334 108.26 81.039 1 58440000 19643 5783 13553 13792 23090;23091 23090 590 0.06368810336698516 HPAPLCTIRTL 11 Carbamidomethyl (C) _HPAPLC(Carbamidomethyl (C))TIRTL_ HPAPLC(1)TIRTL HPAPLC(57)TIRTL 0 1 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.9044189453125 3 426.904419 1277.69143 1.1282 0.00048164 -0.37251 -0.00015903 0.75571 0.00032262 426.90431548006904 48.628 0.31271 43.232 43.024 43.337 -5.3961 31 18 3 0 0 0 0.020907 1 30243 30243 57.204 47.96 1 26404000 19644 5783 13553 13792 23092 23092 590 0.06368810336698516 HPAPPPSNY 9 Unmodified _HPAPPPSNY_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2355651855469 2 490.235242 978.45593 NaN NaN NaN NaN NaN NaN NaN 20.333 1 20.333 19.833 20.833 0 0 0 0 0.82015 1 10225 10225 5.2307 2.6532 1 19645 1366 13554 13793 23093 23093 -0.0341595879643819 HPAPPPSNY 9 Unmodified _HPAPPPSNY_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2349853515625 2 490.235242 978.45593 NaN NaN NaN NaN NaN NaN NaN 20.563 1 20.563 20.063 21.063 0 0 0 0 0.82015 1 10354 10354 5.2307 2.3415 1 19646 1366 13554 13793 23094 23094 -0.0341595879643819 HPARFSPDDKY 11 Unmodified _HPARFSPDDKY_ 0 0 0 ENSG00000182117|ENST00000328848|NOP10 ENSG00000182117|ENST00000328848|NOP10 ENSG00000182117|ENST00000328848|NOP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.8831787109375 3 444.882559 1331.62585 0.78126 0.00034757 -0.43933 -0.00019545 0.34194 0.00015212 444.8826197659287 22.347 0.36885 19.612 19.412 19.781 -2.7348 49 19 3 0 0 0 0.11523 1 11982 11982 40.714 20.727 1 14345000 19647 9018 13555 13794 23095 23095 -0.02669887584670505 HPARLTIEAY 10 Unmodified _HPARLTIEAY_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.816650390625 2 585.81693 1169.61931 0.36954 0.00021648 -1.6532 -0.00096846 -1.2836 -0.00075198 585.8155680964984 36.231 0.15952 36.231 36.131 36.29 0 12 7 2 0 0 0 0.42143 1 19225 19225 20.415 3.3016 1 4344100 19648 6155;16276;16275 13556 13795 23096 23096 0.04128219254607757 HPARLTIEAY 10 Unmodified _HPARLTIEAY_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8805541992188 3 390.880379 1169.61931 NaN NaN NaN NaN NaN NaN NaN 36.45 1 36.201 35.701 36.701 -0.2497 0 0 0 0.80141 1 19124 19124 19.626 11.681 1 19649 6155;16276;16275 13556 13795 23097 23097 0.04128219254607757 HPARLTIEAY 10 Unmodified _HPARLTIEAY_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8170776367188 2 585.81693 1169.61931 0.18449 0.00010808 -0.29169 -0.00017088 -0.10721 -6.2804E-05 585.8167076252886 39.988 0.28113 35.458 35.291 35.572 -4.5294 37 23 2 0 0 0 0.078742 2 23903 23760;23903 51.415 26.016 1 31595000 19650 6155;16276;16275 13556 13795 23098;23099 23099 0.04128219254607757 HPARLTIEAY 10 Unmodified _HPARLTIEAY_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.81693 1169.61931 -0.56141 -0.00032889 -0.90246 -0.00052868 -1.4639 -0.00085756 585.8172180565518 36.453 0.2284 36.204 36.086 36.315 -0.2497 -0.01365 0.00071795 NaN 20.415 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 9333000 19651 6155;16276;16275 13556 13795 0.04128219254607757 HPARPTVESF 10 Unmodified _HPARPTVESF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7926635742188 2 570.793455 1139.57236 -0.45506 -0.00025975 0.16748 9.5599E-05 -0.28758 -0.00016415 570.793630946878 27.948 0.21629 27.948 27.804 28.021 0 26 11 3 0 0 0 0.22237 1 14380 14380 32.037 6.6382 1 8033400 19652 16412 13557 13796 23100 23100 0.008153597034606719 HPARPTVESF 10 Unmodified _HPARPTVESF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8645935058594 3 380.864729 1139.57236 -0.75176 -0.00028632 0.39409 0.0001501 -0.35767 -0.00013622 380.86481989573736 27.948 0.18038 27.948 27.804 27.985 0 14 8 2 0 0 0 0.64628 1 14401 14401 11.518 4.8875 1 2933000 19653 16412 13557 13796 23101 23101 0.008153597034606719 HPARPTVESF 10 Unmodified _HPARPTVESF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.79443359375 2 570.793455 1139.57236 0.7034 0.0004015 0.56696 0.00032362 1.2704 0.00072512 570.7939868322428 27.889 0.21584 27.842 27.741 27.956 -0.04641 15 8 3 0 0 0 0.052718 1 14392 14392 57.249 24.944 1 6725300 19654 16412 13557 13796 23102 23102 0.008153597034606719 HPARPTVESF 10 Unmodified _HPARPTVESF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7944946289062 2 570.793455 1139.57236 1.0881 0.0006211 1.2251 0.00069926 2.3132 0.0013204 570.7939854723811 30.901 0.29007 27.404 27.23 27.52 -3.497 19 12 2 0 0 0 0.052718 1 17512 17512 57.249 25.981 1 37250000 19655 16412 13557 13796 23103 23103 0.008153597034606719 HPASDKIEAY 10 Unmodified _HPASDKIEAY_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7781372070312 2 565.77747 1129.54039 -0.19618 -0.00011099 0.27415 0.00015511 0.077973 4.4115E-05 565.7775048485807 20.596 0.24465 20.596 20.485 20.729 0 52 18 4 0 0 0 0.56348 2 10330 10330;10426 13.042 2.2185 1 5681600 19656 1675 13558 13797 23104;23105 23104 -0.019200527703333137 HPASDKIEAY 10 Unmodified _HPASDKIEAY_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5212707519531 3 377.520739 1129.54039 -0.44256 -0.00016708 0.49323 0.00018621 0.050667 1.9128E-05 377.5210211373529 20.606 0.13041 20.606 20.515 20.646 0 16 9 2 0 0 0 0.69064 1 10374 10374 1.9064 0.1641 1 721320 19657 1675 13558 13797 23106 23106 -0.019200527703333137 HPASDKIEAY 10 Unmodified _HPASDKIEAY_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.777587890625 2 565.77747 1129.54039 0.41451 0.00023452 -0.66719 -0.00037748 -0.25268 -0.00014296 565.7771030761506 22.88 0.33323 20.101 19.899 20.232 -2.7784 47 24 3 0 0 0 0.035244 2 12259 12259;12381 65.474 42.737 1 9021800 19658 1675 13558 13797 23107;23108 23107 -0.019200527703333137 HPASRRTR 8 Unmodified _HPASRRTR_ 0 0 0 REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.54638671875 1 980.549671 979.542394 0.045472 4.4587E-05 -1.9425 -0.0019047 -1.8971 -0.0018602 980.5482317020522 24.727 0.62252 24.726 24.299 24.922 -0.0016747 34 25 2 0 0 0 0.80624 1 12483 12483 2.8892 0 1 6209300 + 19659 27276 13559 13798 23109 23109 0.051804655487899254 HPASRRTR 8 Unmodified _HPASRRTR_ 0 0 0 REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF REV__ENST00000458407.1_1_2:133110346-133110880:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.0536499023438 1 980.549671 979.542394 0.045472 4.4587E-05 -1.9425 -0.0019047 -1.8971 -0.0018602 980.5482317020522 24.727 0.62252 24.726 24.299 24.922 -0.0016747 34 25 2 0 0 0 8.7369 1 12462 12462 2.8892 0 1 6209300 + 19660 27276 13559 13798 23110 23110 0.051804655487899254 HPASVLSQPQY 11 Unmodified _HPASVLSQPQY_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.810546875 2 613.811845 1225.60914 -0.34796 -0.00021358 -0.59082 -0.00036265 -0.93877 -0.00057623 613.8112706238682 35.867 0.22527 35.644 35.546 35.772 -0.2224 16 9 2 0 0 0 0.02135 1 18821 18821 62.573 35.689 1 3307400 19661 678 13560 13799 23111 23111 0.0053561152938073064 HPASVLSQPQY 11 Unmodified _HPASVLSQPQY_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8134155273438 2 613.811845 1225.60914 1.1748 0.00072112 -1.3961 -0.00085697 -0.22132 -0.00013585 613.8110679854209 40.93 0.35107 36.322 36.116 36.467 -4.6079 47 21 3 0 0 0 0.00017946 2 24408 24408;24543 92.653 62.017 1 12227000 19662 678 13560 13799 23112;23113 23112 0.0053561152938073064 HPATSQLHFPL 11 Unmodified _HPATSQLHFPL_ 0 0 0 ENST00000344120.4_1_5:141690156-141690324:-|nuORF ENST00000344120.4_1_5:141690156-141690324:-|nuORF ENST00000344120.4_1_5:141690156-141690324:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2278137207031 3 416.555895 1246.64586 0.40331 0.000168 -1.0978 -0.00045731 -0.69453 -0.00028931 416.55494471472855 43.17 0.22422 43.154 43.042 43.266 -0.015667 18 10 3 0 0 0 0.29799 1 23083 23083 9.7643 7.3295 1 12561000 19663 12011 13561 13800 23114 23114 0.032399081459288936 HPATVFILF 9 Unmodified _HPATVFILF_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7975463867188 2 522.797478 1043.5804 0.41342 0.00021613 -0.26388 -0.00013795 0.14954 7.818E-05 522.7972310795604 90.195 0.47141 90.238 90.022 90.494 0.042175 48 16 4 0 0 0 0.0094915 2 50123 50123;50234 81.864 21.474 1 58109000 19664 2927 13562 13801 23115;23116 23115 0.060355386908895525 HPAVSRHLE 9 Unmodified _HPAVSRHLE_ 0 0 0 REV__ENSG00000110243|ENST00000227665|APOA5 REV__ENSG00000110243|ENST00000227665|APOA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.28125 2 523.280515 1044.54648 1.032 0.00054004 -0.58185 -0.00030447 0.45017 0.00023556 523.2803947494677 36.887 0.51974 32.603 32.337 32.857 -4.2835 80 31 3 0 0 0 0.30202 1 21591 21591 17.113 3.498 1 35039000 + 19665 18699 13563 13802 23117 23117 0.02598510251868902 HPAVVFSVQL 10 Unmodified _HPAVVFSVQL_ 0 0 0 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 MSMS AL20221201_MKP_PDAC_01 4 548.8101196289062 2 548.811116 1095.60768 NaN NaN NaN NaN NaN NaN NaN 80.823 1 74.647 74.147 75.147 -6.1757 0 0 0 0.73897 1 53029 53029 17.113 2.2746 1 19666 10725 13564 13803 23118 23118 0.0637002223129457 HPAVVFSVQL 10 Unmodified _HPAVVFSVQL_ 0 0 0 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 ENSG00000244165|ENST00000321826|P2RY11 MSMS AL20221201_MKP_PDAC_01 4 548.8130493164062 2 548.811116 1095.60768 NaN NaN NaN NaN NaN NaN NaN 80.999 1 74.823 74.323 75.323 -6.1757 0 0 0 0.32543 1 53148 53148 34.402 3.7652 1 19667 10725 13564 13803 23119 23119 0.0637002223129457 HPCLYILTF 9 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))LYILTF_ HPC(1)LYILTF HPC(60)LYILTF 0 1 0 ENSG00000134255|ENST00000357172|CEPT1;ENST00000473474.5_1_1:111715860-111726929:+|nuORF ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7998657226562 2 582.299527 1162.5845 0.46154 0.00026876 -1.9394 -0.0011293 -1.4779 -0.00086055 582.2999797977958 98.688 0.17461 92.512 92.414 92.589 -6.1757 36 12 5 0 0 0 0.023761 2 65455 65455;65463 59.795 19.838 1 44747000 19668 4578 13565 13804 23120;23121 23120 469 0.00971260122264539 HPCPGSCHSCF 11 3 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))PGSC(Carbamidomethyl (C))HSC(Carbamidomethyl (C))F_ HPC(1)PGSC(1)HSC(1)F HPC(50)PGSC(50)HSC(50)F 0 3 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 673.2491455078125 2 673.247174 1344.4798 NaN NaN NaN NaN NaN NaN NaN 20.156 1 17.499 16.999 17.999 -2.6564 0 0 0 0.10709 1 10723 10723 49.554 43.822 1 19669 3760 13566 13805 23122 23122 376;377;378 -0.17866552688224147 HPCSHVGHVF 10 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))SHVGHVF_ HPC(1)SHVGHVF HPC(59)SHVGHVF 0 1 0 ENSG00000119514|ENST00000375011|GALNT12;nc|ENSG00000119514|Q8IXK2-2|GALNT12;nc|ENSG00000257594|Q8N4A0-2|GALNT4;ENST00000547474.1_3_12:89916592-89919989:-|nuORF;ENSG00000257594|ENST00000529983|GALNT4 ENSG00000119514|ENST00000375011|GALNT12;ENSG00000257594|ENST00000529983|GALNT4 ENSG00000119514|ENST00000375011|GALNT12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8509826660156 3 392.850425 1175.52945 0.99159 0.00038955 1.124 0.00044157 2.1156 0.00083111 392.85075623487273 22.233 0.33635 19.498 19.32 19.657 -2.7348 41 17 3 0 0 0 0.047829 1 11904 11904 59.368 53.5 1 8695100 19670 3441;10812 13567 13806 23123 23123 348 -0.051297336256084236 HPCVCTGSIKF 11 2 Carbamidomethyl (C) _HPC(Carbamidomethyl (C))VC(Carbamidomethyl (C))TGSIKF_ HPC(1)VC(1)TGSIKF HPC(97)VC(97)TGSIKF 0 2 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MSMS AL20221201_MKP_PDAC_01 4 653.3074340820312 2 653.307558 1304.60056 NaN NaN NaN NaN NaN NaN NaN 44.641 1 39.789 39.289 40.289 -4.852 0 0 0 3.5704E-07 1 27277 27277 96.936 74.199 1 19671 5701 13568 13807 23124 23124 585;586 -0.03955401703137795 HPDAPMSQVY 10 Oxidation (M) _HPDAPM(Oxidation (M))SQVY_ HPDAPM(1)SQVY HPDAPM(65)SQVY 0 0 1 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7554931640625 2 580.755681 1159.49681 -0.23953 -0.00013911 -0.16 -9.2919E-05 -0.39953 -0.00023203 580.755732380979 24.548 0.56309 24.548 24.301 24.864 0 126 30 5 0 0 0 0.035736 3 12558 12459;12558;12662 65.235 38.351 1 58388000 19672 9411 13569 13808 23125;23126;23127 23126 1550 -0.07655985539122412 HPDAPMSQVY 10 Oxidation (M) _HPDAPM(Oxidation (M))SQVY_ HPDAPM(1)SQVY HPDAPM(82)SQVY 0 0 1 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7561645507812 2 580.755681 1159.49681 0.42223 0.00024521 -0.20447 -0.00011875 0.21776 0.00012646 580.7557023269222 27.841 0.68939 24.693 24.429 25.119 -3.1482 124 36 4 0 0 0 0.013171 3 15367 15367;15485;15610 81.89 57.87 1 96814000 19673 9411 13569 13808 23128;23129;23130 23128 1550 -0.07655985539122412 HPDAPMSQVY 10 Unmodified _HPDAPMSQVY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7591552734375 2 572.758223 1143.50189 NaN NaN NaN NaN NaN NaN NaN 35.013 1 35.013 34.513 35.513 0 0 0 0 0.054531 1 18488 18488 56.177 39.235 1 19674 9411 13569 13809 23131 23131 -0.06411681676490844 HPDAPMSQVY 10 Unmodified _HPDAPMSQVY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7575073242188 2 572.758223 1143.50189 NaN NaN NaN NaN NaN NaN NaN 35.21 1 35.21 34.71 35.71 0 0 0 0 0.3465 1 18605 18605 34.402 16.267 1 19675 9411 13569 13809 23132 23132 -0.06411681676490844 HPDAPMSQVY 10 Unmodified _HPDAPMSQVY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7584228515625 2 572.758223 1143.50189 0.35111 0.0002011 -0.38633 -0.00022127 -0.03522 -2.0172E-05 572.7579303845426 39.989 0.66889 35.46 35.155 35.824 -4.5294 146 53 3 0 0 0 0.013171 3 23767 23636;23767;23905 81.89 60.353 1 174410000 19676 9411 13569 13809 23133;23134;23135 23134 -0.06411681676490844 HPDCLMLNF 9 Carbamidomethyl (C),Oxidation (M) _HPDC(Carbamidomethyl (C))LM(Oxidation (M))LNF_ HPDC(1)LMLNF HPDCLM(1)LNF HPDC(93)LMLNF HPDCLM(93)LNF 0 1 1 nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENST00000482747.1_1_20:57556337-57564148:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000477741.5_1_20:57562773-57565044:+|nuORF nc|ENSG00000101158|Q8IXH7-3|NELFCD;ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7545166015625 2 581.754627 1161.4947 0.28403 0.00016524 -1.1192 -0.00065109 -0.83515 -0.00048585 581.7545416757603 59.576 0.47899 59.085 58.814 59.293 -0.49079 84 22 6 0 0 0 0.0082281 2 32437 32328;32437 92.822 71.075 1 6800500 19677 1921;14112 13570 13810 23136;23137 23137 190 325 -0.0795873754857439 HPDEFGFLL 9 Unmodified _HPDEFGFLL_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.76806640625 2 537.766374 1073.5182 0.51756 0.00027832 1.0466 0.0005628 1.5641 0.00084113 537.7671551761159 82.318 0.40277 81.823 81.629 82.032 -0.4952 35 16 3 0 0 0 0.18465 1 45043 45043 24.674 0 1 1023700 19678 4271 13571 13811 23138 23138 -0.01562232448100076 HPDEFGFLL 9 Unmodified _HPDEFGFLL_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7664184570312 2 537.766374 1073.5182 0.94229 0.00050673 1.6338 0.00087858 2.5761 0.0013853 538.2688250889943 98.468 0.15942 92.293 92.206 92.365 -6.1757 15 10 2 0 0 0 0.052168 1 65329 65329 44.407 1.439 1 17641000 19679 4271 13571 13811 23139 23139 -0.01562232448100076 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.8057250976562 2 601.806228 1201.5979 -0.75765 -0.00045596 0.10629 6.3967E-05 -0.65135 -0.00039199 601.8062628269373 33.967 0.63671 33.967 33.709 34.345 0 112 32 5 0 0 0 0.015874 3 17876 17770;17876;17990 74.2 27.833 1 284730000 19680 3108 13572 13812 23140;23141;23142 23141 0.005167894352325675 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.5397338867188 3 401.539911 1201.5979 -0.66637 -0.00026758 0.7047 0.00028296 0.038322 1.5388E-05 401.5400245453424 33.976 0.5985 33.976 33.728 34.326 0 82 30 4 0 0 0 0.07026 3 17879 17773;17879;17994 53.317 29.516 1 43483000 19681 3108 13572 13812 23143;23144;23145 23144 0.005167894352325675 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.8065185546875 2 601.806228 1201.5979 -0.24879 -0.00014972 0.66419 0.00039972 0.41541 0.00024999 601.8065115943738 34.103 0.43638 33.911 33.694 34.13 -0.19132 43 16 3 0 0 0 0.02847 2 17755 17755;17858 70.332 34.205 1 7976900 19682 3108 13572 13812 23146;23147 23146 0.005167894352325675 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.805908203125 2 601.806228 1201.5979 -0.014257 -8.5802E-06 0.93365 0.00056188 0.91939 0.0005533 601.8064928655756 33.841 0.26926 33.87 33.745 34.014 0.028934 28 11 3 0 0 0 0.040614 1 17801 17801 55.503 19.376 1 3612500 19683 3108 13572 13812 23148 23148 0.005167894352325675 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.8065795898438 2 601.806228 1201.5979 0.2686 0.00016165 -0.40172 -0.00024176 -0.13312 -8.0112E-05 601.8059906693795 38.171 0.78003 33.802 33.4 34.18 -4.3689 174 47 5 0 0 0 0.002045 4 22653 22269;22397;22525;22653 91.085 57.161 1 651760000 19684 3108 13572 13812 23149;23150;23151;23152 23152 0.005167894352325675 HPDEKSIITY 10 Unmodified _HPDEKSIITY_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5413818359375 3 401.539911 1201.5979 1.0084 0.00040493 0.14546 5.8406E-05 1.1539 0.00046333 401.5398483372377 38.168 0.6946 33.799 33.456 34.15 -4.3689 110 42 3 0 0 0 0.20771 3 22318 22318;22442;22572 32.898 22.583 1 123200000 19685 3108 13572 13812 23153;23154;23155 23153 0.005167894352325675 HPDEPLYSF 9 Unmodified _HPDEPLYSF_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7537231445312 2 552.753464 1103.49238 0.68936 0.00038105 0.079371 4.3872E-05 0.76873 0.00042492 552.7531837687648 53.202 0.45826 53.202 53.003 53.462 0 75 20 5 0 0 0 0.0090851 1 29480 29480 85.357 56.87 1 29350000 19686 3410 13573 13813 23156 23156 -0.05523126690377467 HPDEPLYSF 9 Unmodified _HPDEPLYSF_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.75341796875 2 552.753464 1103.49238 1.0596 0.00058569 -0.93333 -0.0005159 0.12625 6.9784E-05 552.7530690243486 59.28 0.60117 53.206 52.935 53.536 -6.0745 88 32 4 0 0 0 0.0082281 2 37970 37970;38114 92.822 50.728 1 61287000 19687 3410 13573 13813 23157;23158 23157 -0.05523126690377467 HPDESGSKFQL 11 Unmodified _HPDESGSKFQL_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5348815917969 3 415.535048 1243.58332 -0.94088 -0.00039097 1.0308 0.00042835 0.089972 3.7387E-05 415.5353898402427 32.898 0.37571 32.898 32.733 33.109 0 33 18 2 0 0 0 0.35243 2 17179 17179;17292 14.218 11.587 1 4813100 19688 1833 13574 13814 23159;23160 23159 -0.028732827129033467 HPDESGSKFQL 11 Unmodified _HPDESGSKFQL_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7994384765625 2 622.798934 1243.58332 -0.65465 -0.00040772 0.63306 0.00039427 -0.021596 -1.345E-05 622.7994806444261 32.917 0.31548 32.917 32.753 33.068 0 29 15 2 0 0 0 0.055321 1 17182 17182 49.742 25.721 1 3225600 19689 1833 13574 13814 23161 23161 -0.028732827129033467 HPDESGSKFQL 11 Unmodified _HPDESGSKFQL_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.7997436523438 2 622.798934 1243.58332 1.0762 0.00067025 0.96068 0.00059831 2.0369 0.0012686 622.7993502967765 35.987 0.37812 31.794 31.584 31.962 -4.1928 43 23 2 0 0 0 1.4363E-11 2 21016 20882;21016 128.58 94.177 1 9196600 19690 1833 13574 13814 23162;23163 23163 -0.028732827129033467 HPDESGSKFQL 11 Unmodified _HPDESGSKFQL_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000556584.5_1_14:50131352-50154906:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.5353393554688 3 415.535048 1243.58332 1.5302 0.00063585 0.11049 4.5912E-05 1.6407 0.00068176 415.53497626457676 35.954 0.4772 31.762 31.541 32.018 -4.1928 67 29 3 0 0 0 1.3287E-06 2 20891 20891;21027 76.416 66.652 1 12196000 19691 1833 13574 13814 23164;23165 23164 -0.028732827129033467 HPDGVASVSF 10 Unmodified _HPDGVASVSF_ 0 0 0 ENSG00000102241|ENST00000218364|HTATSF1 ENSG00000102241|ENST00000218364|HTATSF1 ENSG00000102241|ENST00000218364|HTATSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2458190917969 2 508.245806 1014.47706 0.21717 0.00011038 0.086854 4.4143E-05 0.30403 0.00015452 508.2455967337268 43.435 0.36248 43.435 43.242 43.605 0 39 17 3 0 0 0 0.02987 1 23534 23534 68.081 33.679 1 19623000 19692 2031 13575 13815 23166 23166 -0.029599934875591316 HPDGVASVSF 10 Unmodified _HPDGVASVSF_ 0 0 0 ENSG00000102241|ENST00000218364|HTATSF1 ENSG00000102241|ENST00000218364|HTATSF1 ENSG00000102241|ENST00000218364|HTATSF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2921447753906 2 508.245806 1014.47706 0.52507 0.00026687 2.8948 0.0014712 3.4198 0.0017381 508.247445077455 49.035 0.1854 43.639 43.505 43.691 -5.3961 13 11 2 0 0 0 0.072528 1 30506 30506 61.357 30.089 1 29231000 19693 2031 13575 13815 23167 23167 -0.029599934875591316 HPDGVIPVL 9 Unmodified _HPDGVIPVL_ 0 0 0 ENSG00000213619|ENST00000263774|NDUFS3;ENST00000533507.5_1_11:47602194-47606030:+|nuORF;nc|ENSG00000213619|O75489-2|NDUFS3 ENSG00000213619|ENST00000263774|NDUFS3 ENSG00000213619|ENST00000263774|NDUFS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7720947265625 2 473.77146 945.528367 NaN NaN NaN NaN NaN NaN NaN 62.308 1 62.308 61.808 62.808 0 0 0 0 0.086291 1 34751 34751 46.921 8.7697 1 19694 10447 13576 13816 23168 23168 0.05342375277132305 HPDGVIPVL 9 Unmodified _HPDGVIPVL_ 0 0 0 ENSG00000213619|ENST00000263774|NDUFS3;ENST00000533507.5_1_11:47602194-47606030:+|nuORF;nc|ENSG00000213619|O75489-2|NDUFS3 ENSG00000213619|ENST00000263774|NDUFS3 ENSG00000213619|ENST00000263774|NDUFS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7715148925781 2 473.77146 945.528367 NaN NaN NaN NaN NaN NaN NaN 62.489 1 62.489 61.989 62.989 0 0 0 0 0.086291 1 34857 34857 46.921 8.7697 1 19695 10447 13576 13816 23169 23169 0.05342375277132305 HPDIFIEHF 9 Unmodified _HPDIFIEHF_ 0 0 0 nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7 nc|ENSG00000121690|Q96QD5-2|DEPDC7 nc|ENSG00000121690|Q96QD5-2|DEPDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7849731445312 2 577.785099 1153.55564 0.37203 0.00021495 0.57328 0.00033123 0.94531 0.00054619 577.7856538901674 58.131 0.32841 57.641 57.471 57.8 -0.48974 20 15 2 0 0 0 0.042911 1 31591 31591 48.346 35.303 1 1517400 19696 3593 13577 13817 23170 23170 -0.014991411824667011 HPDIHKAI 8 Unmodified _HPDIHKAI_ 0 0 0 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 ENSG00000146233|ENST00000275016|CYP39A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7615661621094 2 465.761426 929.5083 NaN NaN NaN NaN NaN NaN NaN 72.01 1 72.049 71.549 72.549 0.039024 0 0 0 0.7268 1 39647 39647 26.884 8.7487 1 19697 5764 13578 13818 23171 23171 0.04072624337175057 HPDIIRPIT 9 Unmodified _HPDIIRPIT_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.308837890625 2 531.308741 1060.60293 0.50019 0.00026575 -2.6628 -0.0014148 -2.1626 -0.001149 531.3087583499636 52.349 0.35355 51.915 51.73 52.083 -0.43367 53 17 5 0 0 0 0.06294 1 28256 28256 41.84 0 1 6854400 19698 8158 13579 13819 23172 23172 0.07505138088504282 HPDKDVRLL 9 Unmodified _HPDKDVRLL_ 0 0 0 nc|ENSG00000083642|Q9NTI5-3|PDS5B;ENST00000498550.5_1_13:33222909-33262824:+|nuORF;nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B;nc|ENSG00000083642|Q9NTI5-4|PDS5B;ENST00000493653.1_1_13:33222909-33226198:+|nuORF nc|ENSG00000083642|Q9NTI5-3|PDS5B nc|ENSG00000083642|Q9NTI5-3|PDS5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8768920898438 3 364.876857 1091.60874 -0.50226 -0.00018326 -0.54213 -0.00019781 -1.0444 -0.00038108 364.8766740262706 26.23 0.18158 26.23 26.162 26.343 0 18 10 2 0 0 0 0.2546 1 13478 13478 14.218 10.029 1 1217400 19699 1369 13580 13820 23173 23173 0.06660236600191638 HPDKKIVAY 9 Unmodified _HPDKKIVAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.5378723144531 3 357.537953 1069.59203 -0.49998 -0.00017876 0.88361 0.00031592 0.38363 0.00013716 357.5381630266805 18.59 0.36257 18.59 18.444 18.806 0 127 37 5 0 0 0 0.30562 1 9224 9224 21.537 8.6644 1 26959000 19700 15906 13581 13821 23174 23174 0.06001735714221468 HPDKKIVAY 9 Unmodified _HPDKKIVAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.8030395507812 2 535.803291 1069.59203 -0.31269 -0.00016754 0.36495 0.00019554 0.052256 2.7999E-05 535.8034296219437 18.581 0.19648 18.581 18.495 18.692 0 47 19 3 0 0 0 0.094149 1 9240 9240 34.402 15.145 1 1529800 19701 15906 13581 13821 23175 23175 0.06001735714221468 HPDKKIVAY 9 Unmodified _HPDKKIVAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5392456054688 3 357.537953 1069.59203 1.7828 0.00063742 -0.069035 -2.4683E-05 1.7138 0.00061274 357.53784573560876 19.828 0.56727 17.172 16.926 17.493 -2.6564 138 35 5 0 0 0 0.095405 3 10632 10430;10532;10632 38.176 19.802 1 257240000 19702 15906 13581 13821 23176;23177;23178 23178 0.06001735714221468 HPDKKIVAY 9 Unmodified _HPDKKIVAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8026733398438 2 535.803291 1069.59203 1.0198 0.0005464 0.3193 0.00017108 1.3391 0.00071748 535.8034268080854 19.832 0.44936 17.176 16.955 17.404 -2.6564 76 27 4 0 0 0 0.0086209 2 10448 10448;10549 89.401 58.764 1 22647000 19703 15906 13581 13821 23179;23180 23179 0.06001735714221468 HPDLEVGEEPL 11 Unmodified _HPDLEVGEEPL_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8;REV__ENST00000478380.5_1_9:286487-312499:+|nuORF REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2044067382812 3 412.203187 1233.58773 NaN NaN NaN NaN NaN NaN NaN 28.908 1 28.908 28.408 29.408 0 0 0 0 0.93893 1 14954 14954 1.3296 0.25818 1 + 19704 29555;27634 13582 13822 23181 23181 -0.019718182899850945 HPDLGSIKVR 10 Unmodified _HPDLGSIKVR_ 0 0 0 REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF REV__ENST00000606521.1_1_6:85452265-85472428:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1797180175781 3 374.552374 1120.63529 -0.19316 -7.235E-05 0.2056 7.7008E-05 0.012438 4.6587E-06 374.55246288412775 31.053 0.29498 31.083 30.904 31.199 0.030106 38 12 4 0 0 0 0.23896 1 16314 16314 1.7423 0.52744 1 12617000 + 19705 18838 13583 13823 23182 23182 0.07979925491508766 HPDLPLAVY 9 Unmodified _HPDLPLAVY_ 0 0 0 ENSG00000148218|ENST00000409155|ALAD;nc|ENSG00000148218|P13716-2|ALAD;ENST00000482847.5_1_9:116150582-116155760:-|nuORF ENSG00000148218|ENST00000409155|ALAD ENSG00000148218|ENST00000409155|ALAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7772827148438 2 512.776742 1023.53893 0.43349 0.00022229 0.29641 0.00015199 0.72991 0.00037428 513.2786260425927 62.801 0.1608 62.315 62.185 62.346 -0.48617 11 7 2 0 0 0 0.06187 1 34212 34212 42.095 23.948 1 3525000 19706 5905 13584 13824 23183 23183 0.028103579315597926 HPDPDAELQRM 11 Oxidation (M) _HPDPDAELQRM(Oxidation (M))_ HPDPDAELQRM(1) HPDPDAELQRM(59) 0 0 1 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2034301757812 3 442.203193 1323.58775 -0.19404 -8.5805E-05 -0.54077 -0.00023913 -0.73481 -0.00032493 442.203160888818 20.83 0.20622 20.83 20.712 20.919 0 75 29 4 0 0 0 0.018255 1 10466 10466 59.013 56.76 1 4260400 19707 3461 13585 13825 23184 23184 616 -0.06110141561657656 HPDPDAELQRM 11 Oxidation (M) _HPDPDAELQRM(Oxidation (M))_ HPDPDAELQRM(1) HPDPDAELQRM(59) 0 0 1 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2047729492188 3 442.203193 1323.58775 0.31358 0.00013867 0.45692 0.00020205 0.77051 0.00034072 442.20363757401395 23.599 0.31947 20.771 20.579 20.898 -2.8273 40 18 3 0 0 0 0.018255 2 12701 12701;12711 59.013 57.558 1 6910300 19708 3461 13585 13825 23185;23186 23185 616 -0.06110141561657656 HPDPDAELQRM 11 Unmodified _HPDPDAELQRM_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.8717346191406 3 436.871555 1307.59283 1.0886 0.00047556 -2.0391 -0.00089082 -0.95053 -0.00041526 436.8708893705567 36.129 0.3299 31.936 31.77 32.1 -4.1928 40 19 3 0 0 0 1.3386E-08 1 21035 21035 78.61 55.835 1 10387000 19709 3461 13585 13826 23187 23187 -0.04865837699048825 HPDPFANKSL 10 Unmodified _HPDPFANKSL_ 0 0 0 ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENST00000505226.1_1_6:83748090-83767722:-|nuORF ENSG00000118420|ENST00000369747|UBE3D ENSG00000118420|ENST00000369747|UBE3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2888793945312 2 563.288005 1124.56146 -0.080285 -4.5224E-05 1.811 0.0010201 1.7307 0.00097489 563.2888980149403 33.742 0.31141 33.583 33.414 33.726 -0.15918 19 12 2 0 0 0 0.22922 1 17619 17619 36.506 23.464 1 1533200 19710 3370 13586 13827 23188 23188 0.004159573291644847 HPDPFANKSL 10 Unmodified _HPDPFANKSL_ 0 0 0 ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENST00000505226.1_1_6:83748090-83767722:-|nuORF ENSG00000118420|ENST00000369747|UBE3D ENSG00000118420|ENST00000369747|UBE3D MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.28955078125 2 563.288005 1124.56146 1.4181 0.00079878 1.3288 0.00074848 2.7468 0.0015473 563.288968482837 37.619 0.21088 33.25 33.091 33.302 -4.3689 19 12 2 0 0 0 0.0082036 1 22127 22127 93.938 48.239 1 8892300 19711 3370 13586 13827 23189 23189 0.004159573291644847 HPDPRQKALY 10 Unmodified _HPDPRQKALY_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2219543457031 3 408.887645 1223.64111 -0.5398 -0.00022072 0.43879 0.00017941 -0.10102 -4.1306E-05 408.8879143585408 19.49 0.16806 19.49 19.372 19.541 0 26 17 2 0 0 0 0.67046 1 9718 9718 6.1918 3.5606 1 1012600 19712 2242 13587 13828 23190 23190 0.03823024003190767 HPDPRQKALY 10 Unmodified _HPDPRQKALY_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2225952148438 3 408.887645 1223.64111 -0.49415 -0.00020205 0.83112 0.00033983 0.33697 0.00013778 409.22245255618833 19.323 0.20905 19.346 19.237 19.446 0.023106 35 16 3 0 0 0 0.63089 1 9716 9716 9.544 6.4717 1 1945800 19713 2242 13587 13828 23191 23191 0.03823024003190767 HPDPRQKALY 10 Unmodified _HPDPRQKALY_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8880004882812 3 408.887645 1223.64111 -0.13611 -5.5654E-05 1.3041 0.00053321 1.1679 0.00047756 408.8881028867072 19.423 0.15395 19.431 19.36 19.514 0.0078487 19 9 3 0 0 0 0.6192 1 9890 9890 10.151 6.5635 1 641210 19714 2242 13587 13828 23192 23192 0.03823024003190767 HPDPRQKALY 10 Unmodified _HPDPRQKALY_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8886413574219 3 408.887645 1223.64111 1.3237 0.00054124 -0.89059 -0.00036415 0.43311 0.00017709 408.88716016944437 21.257 0.32658 18.564 18.4 18.727 -2.693 60 26 3 0 0 0 0.49559 2 11316 11316;11430 16.566 13.723 1 18469000 19715 2242 13587 13828 23193;23194 23193 0.03823024003190767 HPDPTRLLL 9 Unmodified _HPDPTRLLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3093872070312 2 531.308741 1060.60293 0.34544 0.00018353 0.32769 0.00017411 0.67313 0.00035764 531.3087876279386 52.003 0.35544 51.944 51.751 52.107 -0.058914 39 16 3 0 0 0 0.047788 1 28155 28155 45.7 3.86 1 7099800 19716 9188 13588 13829 23195 23195 0.07505138088527019 HPDPTRLLL 9 Unmodified _HPDPTRLLL_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3108520507812 2 531.308741 1060.60293 0.9899 0.00052594 0.040852 2.1705E-05 1.0307 0.00054765 531.3088500190473 57.56 0.36833 51.532 51.313 51.681 -6.0275 34 19 2 0 0 0 0.078314 1 36761 36761 38.176 3.7738 1 24525000 19717 9188 13588 13829 23196 23196 0.07505138088527019 HPDPTRLLLF 10 Unmodified _HPDPTRLLLF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8434448242188 2 604.842948 1207.67134 0.60967 0.00036875 -0.011899 -7.1971E-06 0.59777 0.00036156 604.8428197047223 72.681 0.3429 72.205 72.02 72.363 -0.47588 33 15 3 0 0 0 0.40136 1 39764 39764 21.537 3.3906 1 1958200 19718 9188 13589 13830 23197 23197 0.07581382668354308 HPDPTRLLLF 10 Unmodified _HPDPTRLLLF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8436889648438 2 604.842948 1207.67134 0.28419 0.00017189 -0.39881 -0.00024122 -0.11462 -6.9329E-05 604.8426908385878 72.076 0.86743 72.115 71.829 72.697 0.039024 130 41 5 0 0 0 0.018732 3 39587 39587;39689;39794 76.825 46.188 1 133260000 19719 9188 13589 13830 23198;23199;23200 23198 0.07581382668354308 HPDPTRLLLF 10 Unmodified _HPDPTRLLLF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5644226074219 3 403.564391 1207.67134 0.11659 4.7051E-05 -0.41791 -0.00016866 -0.30133 -0.0001216 403.56418829145724 72.113 0.50294 72.152 71.893 72.396 0.039024 69 24 4 0 0 0 0.16361 2 39624 39624;39726 27.088 13.57 1 20639000 19720 9188 13589 13830 23201;23202 23201 0.07581382668354308 HPDPTRLLLF 10 Unmodified _HPDPTRLLLF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5649108886719 3 403.564391 1207.67134 1.4969 0.0006041 -0.4844 -0.00019549 1.0125 0.00040861 403.5641613975231 95.686 0.46551 89.511 89.264 89.73 -6.1757 85 28 4 0 0 0 0.067957 2 63274 63274;63395 39.213 15.035 1 165880000 19721 9188 13589 13830 23203;23204 23203 0.07581382668354308 HPDPTRLLLF 10 Unmodified _HPDPTRLLLF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8429565429688 2 604.842948 1207.67134 0.938 0.00056734 -0.78591 -0.00047535 0.15209 9.199E-05 604.8424079347956 95.696 0.43204 89.521 89.264 89.696 -6.1757 94 26 4 0 0 0 0.06987 2 63328 63328;63454 53.404 35.258 1 427560000 19722 9188 13589 13830 23205;23206 23205 0.07581382668354308 HPDQAQAIL 9 Unmodified _HPDQAQAIL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7618408203125 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 34.476 1 34.476 33.976 34.976 0 0 0 0 0.025332 1 18168 18168 71.922 26.172 1 19723 3108 13590 13831 23207 23207 0.012599992663695048 HPDQAQAIL 9 Unmodified _HPDQAQAIL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7615966796875 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 34.651 1 34.651 34.151 35.151 0 0 0 0 0.12343 1 18273 18273 39.95 9.7249 1 19724 3108 13590 13831 23208 23208 0.012599992663695048 HPDQAQAIL 9 Unmodified _HPDQAQAIL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 496.7625732421875 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 38.571 1 34.202 33.702 34.702 -4.3689 0 0 0 0.020219 1 22775 22775 78.149 25.881 1 19725 3108 13590 13831 23209 23209 0.012599992663695048 HPDQAQAIL 9 Unmodified _HPDQAQAIL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 496.7618408203125 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 38.743 1 34.292 33.792 34.792 -4.4509 0 0 0 0.022863 1 22903 22903 74.929 13.572 1 19726 3108 13590 13831 23210 23210 0.012599992663695048 HPDQAQAIL 9 Unmodified _HPDQAQAIL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 496.7614440917969 2 496.761623 991.508694 NaN NaN NaN NaN NaN NaN NaN 38.919 1 34.469 33.969 34.969 -4.4509 0 0 0 0.083082 1 23027 23027 47.749 9.5975 1 19727 3108 13590 13831 23211 23211 0.012599992663695048 HPDQTKHLDF 10 Unmodified _HPDQTKHLDF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2033386230469 3 413.203522 1236.58874 -0.39431 -0.00016293 0.44323 0.00018314 0.048915 2.0212E-05 413.20376388116046 23.53 0.385 23.53 23.367 23.752 0 65 19 4 0 0 0 0.087043 1 12053 12053 57.108 38.768 1 7416100 19728 10367 13591 13832 23212 23212 -0.020095591304425398 HPDQTKHLDF 10 Unmodified _HPDQTKHLDF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2037658691406 3 413.203522 1236.58874 0.046183 1.9083E-05 0.80067 0.00033084 0.84685 0.00034992 413.2038548796709 25.567 0.46516 22.684 22.425 22.89 -2.8831 48 25 2 0 0 0 0.02847 2 14032 13898;14032 61.165 50.637 1 58665000 19729 10367 13591 13832 23213;23214 23214 -0.020095591304425398 HPDQTKHLDF 10 Unmodified _HPDQTKHLDF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3026733398438 2 619.301644 1236.58874 -0.35675 -0.00022094 0.99855 0.0006184 0.6418 0.00039747 619.3022322743896 25.626 0.21448 22.728 22.553 22.767 -2.8978 19 11 2 0 0 0 0.11654 1 13979 13979 43.982 22.392 1 2088900 19730 10367 13591 13832 23215 23215 -0.020095591304425398 HPDRFIECY 9 Carbamidomethyl (C) _HPDRFIEC(Carbamidomethyl (C))Y_ HPDRFIEC(1)Y HPDRFIEC(79)Y 0 1 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.7772827148438 2 618.776948 1235.53934 0.16859 0.00010432 0.0892 5.5195E-05 0.25779 0.00015951 618.7772465858948 38.573 0.46353 34.204 33.98 34.443 -4.3689 62 29 3 0 0 0 0.010611 2 22823 22693;22823 78.728 55.992 1 38147000 19731 7097 13592 13833 23216;23217 23217 693 -0.06900590410896257 HPDRGTSFDL 10 Unmodified _HPDRGTSFDL_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8796691894531 3 382.184238 1143.53089 1.0895 0.00041638 0.83154 0.0003178 1.921 0.00073418 382.18475558203244 46.495 0.20332 46.462 46.369 46.572 -0.033417 15 9 2 0 0 0 0.23227 1 25001 25001 6.1918 0.78914 1 2230800 19732 10220 13593 13834 23218 23218 -0.03513821055844346 HPDRSQPAF 9 Unmodified _HPDRSQPAF_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7568969726562 2 527.756872 1053.49919 -0.12212 -6.4448E-05 0.29794 0.00015724 0.17582 9.279E-05 527.7570800394859 19.736 0.37532 19.736 19.598 19.973 0 136 52 4 0 0 0 0.10247 2 9962 9856;9962 32.786 16.939 1 3553400 19733 10452 13594 13835 23219;23220 23220 -0.025417690191488873 HPDRSQPAF 9 Unmodified _HPDRSQPAF_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.756591796875 2 527.756872 1053.49919 1.2145 0.00064098 -0.99226 -0.00052367 0.22228 0.00011731 527.7562393243549 21.203 0.43746 18.51 18.244 18.682 -2.693 47 27 2 0 0 0 0.012668 2 11324 11225;11324 72.968 47.569 1 11263000 19734 10452 13594 13835 23221;23222 23222 -0.025417690191488873 HPDRSQPAF 9 Unmodified _HPDRSQPAF_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000494022.1_1_6:32065974-32085368:-|nuORF nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1746215820312 3 352.173674 1053.49919 1.8876 0.00066475 -0.22813 -8.0341E-05 1.6594 0.00058441 352.1737531805995 21.169 0.45785 18.476 18.148 18.606 -2.693 40 25 2 0 0 0 0.36964 1 11258 11258 13.615 5.1706 1 4826300 19735 10452 13594 13835 23223 23223 -0.025417690191488873 HPDSRAIMY 9 Oxidation (M) _HPDSRAIM(Oxidation (M))Y_ HPDSRAIM(1)Y HPDSRAIM(46)Y 0 0 1 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.259033203125 2 553.258391 1104.50223 0.22076 0.00012214 -0.21176 -0.00011716 0.0090032 4.9811E-06 553.2583920460823 23.733 0.56259 20.905 20.651 21.213 -2.8273 117 33 5 0 0 0 0.047196 1 12987 12987 46.021 24.484 1 24944000 19736 3189 13595 13836 23224 23224 566 -0.04584261956665614 HPDSRAIMY 9 Unmodified _HPDSRAIMY_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2614135742188 2 545.260933 1088.50731 0.4997 0.00027247 0.18283 9.969E-05 0.68253 0.00037216 545.260934289476 29.59 0.4027 26.288 26.078 26.48 -3.3016 38 25 2 0 0 0 0.0030184 3 16574 16553;16574;16699 126.57 84.726 1 62548000 19737 3189 13595 13837 23225;23226;23227 23226 -0.033399580940340456 HPDSSVNFAEF 11 Unmodified _HPDSSVNFAEF_ 0 0 0 ENSG00000164104|ENST00000296503|HMGB2;ENST00000511316.1_1_4:174254218-174255486:-|nuORF ENSG00000164104|ENST00000296503|HMGB2 ENSG00000164104|ENST00000296503|HMGB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.2796020507812 2 625.277835 1248.54112 0.98645 0.00061681 -0.66825 -0.00041784 0.3182 0.00019896 625.2780708875853 54.465 0.26867 54.465 54.352 54.62 0 19 11 2 0 0 0 0.44182 1 30275 30275 19.362 15.418 1 1163200 19738 7138 13596 13838 23228 23228 -0.07321258121282881 HPDTGISSKAM 11 Unmodified _HPDTGISSKAM_ 0 0 0 ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000234289|ENST00000599962|H2BC12L ENSG00000234289|ENST00000599962|H2BC12L MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2777099609375 2 572.27678 1142.53901 1.0864 0.00062169 0.18329 0.00010489 1.2696 0.00072659 572.2769571821509 21.897 0.41794 19.162 18.976 19.394 -2.7348 64 23 3 0 0 0 6.1613E-11 2 11789 11683;11789 121.5 95.235 1 7602900 19739 3808 13597 13839 23229;23230 23230 -0.026560101307495643 HPDTLREC 8 Unmodified _HPDTLREC_ 0 0 0 REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF REV__ENST00000435712.1_1_10:131904549-131906742:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 485.72265625 2 485.724184 969.433814 NaN NaN NaN NaN NaN NaN NaN 36.335 1 32.142 31.642 32.642 -4.1928 0 0 0 0.91837 1 21206 21206 17.113 0.1706 1 + 19740 27023 13598 13840 23231 23231 -0.05212506536497585 HPDTSYYIRY 10 Unmodified _HPDTSYYIRY_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.8118286132812 2 657.809302 1313.60405 -0.044635 -2.9361E-05 1.2119 0.0007972 1.1673 0.00076784 657.810261024735 37.895 0.26288 37.895 37.786 38.049 0 31 12 3 0 0 0 0.22922 1 20236 20236 29.841 13.691 1 2033200 19741 5383;5725 13599 13841 23232 23232 -0.040206923332334554 HPDTSYYIRY 10 Unmodified _HPDTSYYIRY_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.8111572265625 2 657.809302 1313.60405 0.052733 3.4688E-05 1.121 0.00073742 1.1738 0.00077211 657.8099439164848 38.351 0.39228 38.064 37.847 38.239 -0.28687 42 17 3 0 0 0 0.41271 2 20157 20157;20259 23.79 12.99 1 4024000 19742 5383;5725 13599 13841 23233;23234 23233 -0.040206923332334554 HPDTSYYIRY 10 Unmodified _HPDTSYYIRY_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.3095703125 2 657.809302 1313.60405 0.65336 0.00042979 -0.60864 -0.00040037 0.044722 2.9419E-05 657.8090575525894 42.413 0.40874 37.728 37.508 37.917 -4.6846 57 27 3 0 0 0 0.0013105 3 25538 25538;25574;25668 140.63 106.23 1 21117000 19743 5383;5725 13599 13841 23235;23236;23237 23235 -0.040206923332334554 HPDTSYYIRY 10 Unmodified _HPDTSYYIRY_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A;ENSG00000145780|ENST00000274457|FEM1C ENSG00000141965|ENST00000269856|FEM1A MSMS AL20221201_MKP_PDAC_01 4 438.8752746582031 3 438.875293 1313.60405 NaN NaN NaN NaN NaN NaN NaN 42.418 1 37.733 37.233 38.233 -4.6846 0 0 0 0.02703 1 25629 25629 63.227 48.27 1 19744 5383;5725 13599 13841 23238 23238 -0.040206923332334554 HPDTYRFY 8 Unmodified _HPDTYRFY_ 0 0 0 REV__ENSG00000011376|ENST00000645846|LARS2 REV__ENSG00000011376|ENST00000645846|LARS2 MSMS AL20221201_MKP_PDAC_01 4 366.8393249511719 3 366.838291 1097.49304 NaN NaN NaN NaN NaN NaN NaN 23.994 1 21.167 20.667 21.667 -2.8273 0 0 0 0.97348 1 13027 13027 3.9444 1.2092 1 + 19745 17056 13600 13842 23239 23239 -0.051802872506641506 HPDTYRFYY 9 Unmodified _HPDTYRFYY_ 0 0 0 REV__ENSG00000011376|ENST00000645846|LARS2 REV__ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1922607421875 3 421.192734 1260.55637 -0.6376 -0.00026855 -0.56431 -0.00023768 -1.2019 -0.00050624 421.19264379693306 16.299 0.22681 16.299 16.19 16.417 0 192 61 4 0 0 0 0.55144 1 7981 7981 2.4985 0.90621 1 6463200 + 19746 17056 13601 13843 23240 23240 -0.06348346533422955 HPDVAKVSF 9 Unmodified _HPDVAKVSF_ 0 0 0 nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF nc|ENSG00000143149|P49189-2|ALDH9A1 nc|ENSG00000143149|P49189-2|ALDH9A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2659301757812 2 500.266542 998.51853 -0.34131 -0.00017075 0.29314 0.00014665 -0.048176 -2.4101E-05 500.2667506317034 34.386 0.38924 34.386 34.19 34.579 0 35 19 2 0 0 0 0.026499 2 18169 18056;18169 57.249 37.992 1 5953500 19747 5466 13602 13844 23241;23242 23242 0.01921187271761937 HPDVAKVSF 9 Unmodified _HPDVAKVSF_ 0 0 0 nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF nc|ENSG00000143149|P49189-2|ALDH9A1 nc|ENSG00000143149|P49189-2|ALDH9A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2669982910156 2 500.266542 998.51853 -0.48073 -0.00024049 0.36175 0.00018097 -0.11899 -5.9525E-05 500.26680966979717 34.493 0.40958 34.302 34.174 34.584 -0.19131 26 18 2 0 0 0 0.01085 1 18012 18012 78.06 51.177 1 4534300 19748 5466 13602 13844 23243 23243 0.01921187271761937 HPDVAKVSF 9 Unmodified _HPDVAKVSF_ 0 0 0 nc|ENSG00000143149|P49189-2|ALDH9A1;nc|ENSG00000143149|P49189|ALDH9A1;ENSG00000143149|ENST00000354775|ALDH9A1;ENST00000491436.1_1_1:165638124-165649867:-|nuORF nc|ENSG00000143149|P49189-2|ALDH9A1 nc|ENSG00000143149|P49189-2|ALDH9A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2666625976562 2 500.266542 998.51853 0.58255 0.00029143 -0.021025 -1.0518E-05 0.56152 0.00028091 500.26658980107726 38.491 0.46312 34.122 33.916 34.379 -4.3689 52 29 2 0 0 0 0.0081 2 22632 22632;22768 93.938 42.308 1 36787000 19749 5466 13602 13844 23244;23245 23244 0.01921187271761937 HPDVAPINR 9 Unmodified _HPDVAPINR_ 0 0 0 REV__ENSG00000139044|ENST00000266383|B4GALNT3 REV__ENSG00000139044|ENST00000266383|B4GALNT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.8188171386719 2 509.775065 1017.53558 0.74313 0.00037883 3.3787 0.0017224 4.1218 0.0021012 509.77684403465577 90.028 0.25041 83.852 83.774 84.025 -6.1757 20 13 2 0 0 0 0.18118 1 59450 59450 18.135 5.6034 1 5373000 + 19750 20382 13603 13845 23246 23246 0.027511078775546594 HPDVLPFAL 9 Unmodified _HPDVLPFAL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7790832519531 2 504.779285 1007.54402 0.37095 0.00018725 0.080131 4.0448E-05 0.45108 0.0002277 504.77935182581183 81.02 0.36979 80.527 80.271 80.641 -0.49247 22 17 2 0 0 0 0.12841 1 44320 44320 30.225 16.717 1 2340700 19751 2865 13604 13846 23247 23247 0.04054661794191361 HPDVLPFAL 9 Unmodified _HPDVLPFAL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7808227539062 2 504.779285 1007.54402 1.2118 0.00061168 0.33897 0.0001711 1.5507 0.00078278 504.77911177844965 97.926 0.29433 91.75 91.614 91.908 -6.1757 27 18 2 0 0 0 0.023164 1 64899 64899 60.39 18.295 1 22509000 19752 2865 13604 13846 23248 23248 0.04054661794191361 HPDVTEAMLY 10 Oxidation (M) _HPDVTEAM(Oxidation (M))LY_ HPDVTEAM(1)LY HPDVTEAM(61)LY 0 0 1 ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000101104|Q4VXU2|PABPC1L;ENSG00000101104|ENST00000217073|PABPC1L;nc|ENSG00000101104|Q4VXU2-2|PABPC1L;ENSG00000151846|ENST00000281589|PABPC3 ENSG00000070756|ENST00000318607|PABPC1;ENSG00000151846|ENST00000281589|PABPC3 ENSG00000151846|ENST00000281589|PABPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2704467773438 2 596.271164 1190.52777 0.087154 5.1968E-05 -0.29119 -0.00017363 -0.20404 -0.00012166 596.2708854430304 39.558 0.47345 39.558 39.4 39.873 0 36 22 2 0 0 0 0.043729 1 21219 21219 61.357 38.209 1 3093600 19753 1037;6150 13605 13847 23249 23249 171 -0.059868322249030825 HPDVVYETM 9 Oxidation (M) _HPDVVYETM(Oxidation (M))_ HPDVVYETM(1) HPDVVYETM(51) 0 0 1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7437133789062 2 553.744782 1105.47501 -0.15141 -8.3842E-05 0.6893 0.0003817 0.53789 0.00029785 553.7448589065165 26.515 0.27227 26.515 26.386 26.658 0 21 12 2 0 0 0 0.038285 1 13644 13644 50.855 27.707 1 985480 19754 6524 13606 13848 23250 23250 1140 -0.07350790287705422 HPDVVYETM 9 Unmodified _HPDVVYETM_ 0 0 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.7476196289062 2 545.747324 1089.4801 NaN NaN NaN NaN NaN NaN NaN 43.279 1 38.514 38.014 39.014 -4.7648 0 0 0 0.15618 1 26269 26269 36.044 14.298 1 19755 6524 13606 13849 23251 23251 -0.06106486425073854 HPDYGSHIQAL 11 Unmodified _HPDYGSHIQAL_ 0 0 0 ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT MSMS AL20221201_MKP_PDAC_01 4 413.5386962890625 3 413.203522 1236.58874 NaN NaN NaN NaN NaN NaN NaN 37.75 1 33.381 32.881 33.881 -4.3689 0 0 0 0.88164 1 22189 22189 9.7643 7.8579 1 19756 3594 13607 13850 23252 23252 -0.02009559130397065 HPEAPHEA 8 Unmodified _HPEAPHEA_ 0 0 0 ENST00000331595.8_1_X:152773909-152774230:+|nuORF;ENST00000492658.1_1_X:152771329-152774230:+|nuORF ENST00000331595.8_1_X:152773909-152774230:+|nuORF ENST00000331595.8_1_X:152773909-152774230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2044677734375 2 444.203941 886.39333 0.21567 9.5803E-05 0.032234 1.4318E-05 0.24791 0.00011012 444.20393575041055 25.052 0.28316 22.169 21.945 22.228 -2.8831 34 26 2 0 0 0 0.48669 1 13582 13582 36.044 1.9418 1 13483000 19757 11862 13608 13851 23253 23253 -0.05441104864632962 HPEASIQAVF 10 Unmodified _HPEASIQAVF_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7833862304688 2 549.782556 1097.55056 1.4027 0.00077117 0.72651 0.00039943 2.1292 0.0011706 549.7831883938475 58.768 0.32227 52.693 52.457 52.779 -6.0745 43 17 3 0 0 0 0.04925 1 37634 37634 58.679 39.422 1 22007000 19758 809 13609 13852 23254 23254 0.005685549548843483 HPEATPLRVM 10 Unmodified _HPEATPLRVM_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 575.8065185546875 2 575.805508 1149.59646 NaN NaN NaN NaN NaN NaN NaN 39.948 1 35.418 34.918 35.918 -4.5294 0 0 0 0.024171 1 23783 23783 63.961 29.559 1 19759 16188 13610 13853 23255 23255 0.02764876865489896 HPEATPLRVM 10 Unmodified _HPEATPLRVM_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 384.539794921875 3 384.206098 1149.59646 NaN NaN NaN NaN NaN NaN NaN 39.989 1 35.46 34.96 35.96 -4.5294 0 0 0 0.41201 1 23816 23816 20.581 10.43 1 19760 16188 13610 13853 23256 23256 0.02764876865489896 HPEATPLRVMY 11 Unmodified _HPEATPLRVMY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3375854492188 2 657.337172 1312.65979 0.69279 0.0004554 0.051544 3.3882E-05 0.74433 0.00048928 657.3371139399031 48.691 0.33249 43.294 43.039 43.371 -5.3961 31 19 2 0 0 0 6.4844E-09 1 30314 30314 114.19 86.558 1 18045000 19761 16188 13611 13854 23257 23257 0.015968175827310915 HPEATPLRVMY 11 Unmodified _HPEATPLRVMY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 438.5611572265625 3 438.56054 1312.65979 NaN NaN NaN NaN NaN NaN NaN 48.573 1 43.177 42.677 43.677 -5.3961 0 0 0 0.11623 1 30269 30269 48.073 40.127 1 19762 16188 13611 13854 23258 23258 0.015968175827310915 HPEATPLRVMY 11 Oxidation (M) _HPEATPLRVM(Oxidation (M))Y_ HPEATPLRVM(1)Y HPEATPLRVM(55)Y 0 0 1 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 665.334228515625 2 665.33463 1328.65471 NaN NaN NaN NaN NaN NaN NaN 41.126 1 36.518 36.018 37.018 -4.6079 0 0 0 0.074361 1 24652 24652 55.235 23.966 1 19763 16188 13611 13855 23259 23259 1806 0.0035251372012226057 HPEDGNSVL 9 Unmodified _HPEDGNSVL_ 0 0 0 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 ENSG00000189433|ENST00000339480|GJB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2275695800781 2 484.227613 966.440674 NaN NaN NaN NaN NaN NaN NaN 24.004 1 24.004 23.504 24.504 0 0 0 0 0.6557 1 12251 12251 10.824 2.9138 1 19764 9751 13612 13856 23260 23260 -0.04388870384286747 HPEDVEPAL 9 Unmodified _HPEDVEPAL_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;AKR1A1|p.R96W|1|0.05|ENSG00000117448|chr1:45566950-45566950|C/T|missense_variant;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7454833984375 2 503.745639 1005.47673 -0.162 -8.1607E-05 1.0558 0.00053186 0.89381 0.00045025 503.74612322722203 34.763 0.24583 34.763 34.636 34.882 0 22 12 2 0 0 0 0.03327 1 18383 18383 53.576 25.089 1 3813000 19765 3304;14408 13613 13857 23261 23261 -0.025794132074452136 HPEDVEPAL 9 Unmodified _HPEDVEPAL_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;AKR1A1|p.R96W|1|0.05|ENSG00000117448|chr1:45566950-45566950|C/T|missense_variant;ENST00000496999.5_1_1:46016755-46032693:+|nuORF;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.745639 1005.47673 0.047194 2.3774E-05 -0.29814 -0.00015018 -0.25094 -0.00012641 504.2453364082011 35.117 0.20502 35.144 35.082 35.287 0.027405 0.1907 -0.0011944 NaN 53.576 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 976850 19766 3304;14408 13613 13857 -0.025794132074452136 HPEDWPVYQ 9 Unmodified _HPEDWPVYQ_ 0 0 0 ENST00000529277.5_1_11:44587196-44640673:+|nuORF;nc|ENSG00000085117|P27701-2|CD82;ENSG00000085117|ENST00000227155|CD82 ENST00000529277.5_1_11:44587196-44640673:+|nuORF ENST00000529277.5_1_11:44587196-44640673:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.26611328125 2 585.764363 1169.51417 0.092157 5.3982E-05 0.28758 0.00016845 0.37974 0.00022244 585.764360328156 63.056 0.44613 63.056 62.749 63.195 0 48 18 4 0 0 0 0.16226 2 35082 35082;35180 26.884 3.0939 1 7178600 19767 1401 13614 13858 23262;23263 23262 -0.06380321941810507 HPEDWPVYQ 9 Unmodified _HPEDWPVYQ_ 0 0 0 ENST00000529277.5_1_11:44587196-44640673:+|nuORF;nc|ENSG00000085117|P27701-2|CD82;ENSG00000085117|ENST00000227155|CD82 ENST00000529277.5_1_11:44587196-44640673:+|nuORF ENST00000529277.5_1_11:44587196-44640673:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7644653320312 2 585.764363 1169.51417 0.20542 0.00012033 0.28302 0.00016578 0.48845 0.00028611 585.7645289242549 63.514 0.35169 63.028 62.841 63.192 -0.48617 42 15 3 0 0 0 0.10734 1 34627 34627 32.305 6.0373 1 6713500 19768 1401 13614 13858 23264 23264 -0.06380321941810507 HPEDWPVYQ 9 Unmodified _HPEDWPVYQ_ 0 0 0 ENST00000529277.5_1_11:44587196-44640673:+|nuORF;nc|ENSG00000085117|P27701-2|CD82;ENSG00000085117|ENST00000227155|CD82 ENST00000529277.5_1_11:44587196-44640673:+|nuORF ENST00000529277.5_1_11:44587196-44640673:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 585.764363 1169.51417 0.092157 5.3982E-05 0.28758 0.00016845 0.37974 0.00022244 585.764360328156 63.056 0.44613 63.056 62.749 63.195 0 0.013983 2.6674E-06 NaN 32.305 48 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7178600 19769 1401 13614 13858 -0.06380321941810507 HPEDWPVYQ 9 Unmodified _HPEDWPVYQ_ 0 0 0 ENST00000529277.5_1_11:44587196-44640673:+|nuORF;nc|ENSG00000085117|P27701-2|CD82;ENSG00000085117|ENST00000227155|CD82 ENST00000529277.5_1_11:44587196-44640673:+|nuORF ENST00000529277.5_1_11:44587196-44640673:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.764363 1169.51417 0.20542 0.00012033 0.28302 0.00016578 0.48845 0.00028611 585.7645289242549 63.514 0.35169 63.028 62.841 63.192 -0.48617 -0.013983 -2.6731E-06 NaN 32.305 42 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6713500 19770 1401 13614 13858 -0.06380321941810507 HPEEDQDMT 9 Unmodified _HPEEDQDMT_ 0 0 0 REV__ENSG00000037637|ENST00000375592|FBXO42 REV__ENSG00000037637|ENST00000375592|FBXO42 MSMS AL20221201_MKP_PDAC_01 4 551.2089233398438 2 551.211303 1100.40805 NaN NaN NaN NaN NaN NaN NaN 90.4 1 84.225 83.725 84.725 -6.1757 0 0 0 0.46232 1 59712 59712 17.113 9.2027 1 + 19771 17173 13615 13859 23265 23265 -0.138134455694626 HPEGKFVVD 9 Unmodified _HPEGKFVVD_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2409057617188 2 514.263999 1026.51345 -0.057048 -2.9338E-05 -0.54046 -0.00027794 -0.59751 -0.00030728 514.2637697381343 38.563 0.14898 38.276 38.154 38.303 -0.28687 10 6 2 0 0 0 0.21052 1 20285 20285 6.7232 2.3939 1 2270500 19772 1458 13616 13860 23266 23266 0.0012488340912568674 HPEHFVCAF 9 Carbamidomethyl (C) _HPEHFVC(Carbamidomethyl (C))AF_ HPEHFVC(1)AF HPEHFVC(120)AF 0 1 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN;nc|ENSG00000089159|P49023-4|PXN;ENST00000323871.9_2_12:120650119-120654597:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF nc|ENSG00000089159|P49023-3|PXN;ENSG00000110031|ENST00000395074|LPXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2548217773438 2 572.255651 1142.49675 0.78101 0.00044694 -0.68637 -0.00039278 0.094641 5.4159E-05 572.2553497424639 43.205 0.37723 38.44 38.272 38.65 -4.7648 50 26 2 0 0 0 0.0036753 2 26295 26153;26295 123.1 88.994 1 37907000 19773 16069;2691 13617 13861 23267;23268 23268 274 -0.06879940748490299 HPEHRRDW 8 Unmodified _HPEHRRDW_ 0 0 0 REV__ENST00000577155.5_2_17:78193748-78195568:+|nuORF REV__ENST00000577155.5_2_17:78193748-78195568:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7753295898438 2 566.773388 1131.53222 -0.10114 -5.7325E-05 1.0716 0.00060733 0.97041 0.00055 566.7739345604242 53.644 2.0931 53.58 53.444 55.538 -0.063423 353 111 6 0 0 0 0.57045 6 29383 29064;29383;29588;29689;29893;29995 28.487 28.487 1 4055999999.9999995 + 19774 29029 13618 13862 23269;23270;23271;23272;23273;23274 23270 -0.028281421764404513 HPEHRSFVDLS 11 Unmodified _HPEHRSFVDLS_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8862915039062 3 441.886192 1322.63675 0.36277 0.0001603 -0.57845 -0.00025561 -0.21568 -9.5307E-05 441.8863356082008 33.617 0.26604 33.646 33.503 33.769 0.028934 34 11 4 0 0 0 0.59689 1 17656 17656 6.2344 0.83165 1 6720200 19775 8120 13619 13863 23275 23275 -0.011664852103649537 HPEIDNPEY 9 Unmodified _HPEIDNPEY_ 0 0 0 ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2454833984375 2 557.246003 1112.47745 -0.009228 -5.1423E-06 0.13961 7.7796E-05 0.13038 7.2653E-05 557.2460298134556 29.167 0.40938 29.167 29.002 29.411 0 51 19 4 0 0 0 0.0095811 2 15062 15062;15159 81.613 43.462 1 8437000 19776 8819 13620 13864 23276;23277 23276 -0.0742861855837873 HPEIDNPEY 9 Unmodified _HPEIDNPEY_ 0 0 0 ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.246826171875 2 557.246003 1112.47745 0.98995 0.00055165 0.45169 0.0002517 1.4416 0.00080335 557.2457678949697 33.336 0.34433 29.351 29.18 29.525 -3.9853 40 19 3 0 0 0 0.013323 2 19209 19088;19209 71.134 34.012 1 21606000 19777 8819 13620 13864 23278;23279 23279 -0.0742861855837873 HPEIGLLKY 9 Unmodified _HPEIGLLKY_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3048706054688 2 535.305667 1068.59678 0.48128 0.00025763 -0.62316 -0.00033358 -0.14188 -7.5948E-05 535.3052587878585 48.082 0.21579 47.73 47.615 47.831 -0.3526 19 10 2 0 0 0 0.018301 1 25788 25788 65.235 36.748 1 2714300 19778 9799 13621 13865 23280 23280 0.06522619856991696 HPEKELQMRE 10 Unmodified _HPEKELQMRE_ 0 0 0 ENST00000375749.7_1_20:30823945-30824224:+|nuORF ENST00000375749.7_1_20:30823945-30824224:+|nuORF ENST00000375749.7_1_20:30823945-30824224:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8856201171875 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 22.452 1 19.673 19.173 20.173 -2.7784 0 0 0 0.91092 1 12076 12076 7.4771 1.6936 1 19779 12480 13622 13866 23281 23281 -0.006769608022977991 HPEKEMYVY 9 Unmodified _HPEKEMYVY_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.1860656738281 3 399.186592 1194.53795 NaN NaN NaN NaN NaN NaN NaN 36.946 1 36.696 36.196 37.196 -0.2497 0 0 0 0.84369 1 19403 19403 1.1933 0 1 19780 6095 13623 13867 23282 23282 -0.051542244996426234 HPEKLATVL 9 Unmodified _HPEKLATVL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2984008789062 2 504.297842 1006.58113 -0.17992 -9.0732E-05 -0.05296 -2.6708E-05 -0.23288 -0.00011744 504.29774452469496 34.611 0.44371 34.611 34.402 34.846 0 70 22 4 0 0 0 0.011291 2 18184 18184;18293 76.825 30.804 1 44998000 19781 7266 13624 13868 23283;23284 23283 0.0781033333993264 HPEKLATVL 9 Unmodified _HPEKLATVL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2978820800781 2 504.297842 1006.58113 -0.74255 -0.00037447 0.86932 0.0004384 0.12676 6.3927E-05 504.2982661728451 34.705 0.37065 34.514 34.351 34.722 -0.19131 43 16 4 0 0 0 0.015688 2 18108 18108;18224 67.838 13.065 1 21749000 19782 7266 13624 13868 23285;23286 23285 0.0781033333993264 HPEKLATVL 9 Unmodified _HPEKLATVL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2969665527344 2 504.297842 1006.58113 0.18287 9.2222E-05 0.081078 4.0887E-05 0.26395 0.00013311 504.29787328880644 34.431 0.32142 34.458 34.307 34.628 0.027401 22 14 2 0 0 0 0.08691 1 18150 18150 36.127 9.2434 1 1948900 19783 7266 13624 13868 23287 23287 0.0781033333993264 HPEKLATVL 9 Unmodified _HPEKLATVL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2983093261719 2 504.297842 1006.58113 0.45446 0.00022918 0.4303 0.000217 0.88476 0.00044618 504.29802201942766 38.512 0.60656 34.143 33.836 34.443 -4.3689 109 38 4 0 0 0 0.028475 3 22698 22560;22698;22834 56.177 22.075 1 336070000 19784 7266 13624 13868 23288;23289;23290 23289 0.0781033333993264 HPELEDKD 8 Unmodified _HPELEDKD_ 0 0 0 ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 ENSG00000139970|ENST00000267484|RTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7283630371094 2 491.727446 981.44034 NaN NaN NaN NaN NaN NaN NaN 21.012 1 21.012 20.512 21.512 0 0 0 0 0.97444 1 10604 10604 0.79363 0 1 19785 5200 13625 13869 23291 23291 -0.05112290104148087 HPELEVGKHV 10 Unmodified _HPELEVGKHV_ 0 0 0 nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E nc|ENSG00000198216|Q15878-2|CACNA1E nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8101806640625 2 572.809105 1143.60366 0.18518 0.00010607 -0.15577 -8.9228E-05 0.029408 1.6845E-05 573.310199475931 44.171 0.17441 44.171 44.09 44.265 0 13 8 2 0 0 0 0.48629 1 24028 24028 14.405 2.9107 1 8172800 19786 10064 13626 13870 23292 23292 0.03759932737534655 HPELHDIPIYY 11 Unmodified _HPELHDIPIYY_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MSMS AL20221201_MKP_PDAC_01 4 698.8488159179688 2 698.848427 1395.6823 NaN NaN NaN NaN NaN NaN NaN 79.715 1 73.539 73.039 74.039 -6.1757 0 0 0 0.080715 1 52257 52257 53.833 37.684 1 19787 3417 13627 13871 23293 23293 0.000287402520143587 HPELNGATY 9 Unmodified _HPELNGATY_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2369689941406 2 501.237981 1000.46141 -0.3476 -0.00017423 0.020919 1.0486E-05 -0.32669 -0.00016375 501.2379270317961 27.482 0.25528 27.482 27.362 27.617 0 28 12 3 0 0 0 0.009483 2 14130 14130;14231 81.89 39.796 1 8236500 19788 14644 13628 13872 23294;23295 23294 -0.03880280004614178 HPELNGATY 9 Unmodified _HPELNGATY_ 0 0 0 ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENSG00000175029|ENST00000309035|CTBP2 ENST00000513884.1_1_5:97912076-97912961:+|nuORF ENST00000513884.1_1_5:97912076-97912961:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.238037109375 2 501.237981 1000.46141 NaN NaN NaN NaN NaN NaN NaN 31.106 1 27.41 26.91 27.91 -3.6958 0 0 0 0.010117 1 17594 17594 92.491 46.47 1 19789 14644 13628 13872 23296 23296 -0.03880280004614178 HPELVNHIVF 10 Unmodified _HPELVNHIVF_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8276977539062 2 602.827298 1203.64004 0.17214 0.00010377 -0.47752 -0.00028786 -0.30538 -0.00018409 602.8271592199084 54.298 0.25703 53.831 53.646 53.904 -0.46664 29 12 3 0 0 0 0.087043 1 29400 29400 49.554 26.818 1 8224400 19790 4835 13629 13873 23297 23297 0.04636809634234851 HPELVNHIVF 10 Unmodified _HPELVNHIVF_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.82861328125 2 602.827298 1203.64004 -0.31222 -0.00018821 1.8421 0.0011105 1.5299 0.00092226 602.8284603816825 53.932 0.23625 53.865 53.745 53.981 -0.066936 18 11 2 0 0 0 0.27276 1 29302 29302 29.082 15.176 1 1932200 19791 4835 13629 13873 23298 23298 0.04636809634234851 HPENFNLMF 9 Oxidation (M) _HPENFNLM(Oxidation (M))F_ HPENFNLM(1)F HPENFNLM(65)F 0 0 1 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7606201171875 2 582.760766 1163.50698 0.038059 2.2179E-05 -0.57238 -0.00033356 -0.53432 -0.00031138 582.7605531340292 60.153 0.4581 59.662 59.49 59.948 -0.49079 60 22 3 0 0 0 0.018301 2 32815 32712;32815 65.235 45.978 1 14546000 19792 985 13630 13874 23299;23300 23300 160 -0.0682337781388469 HPENFNLMF 9 Oxidation (M) _HPENFNLM(Oxidation (M))F_ HPENFNLM(1)F HPENFNLM(65)F 0 0 1 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.760498046875 2 582.760766 1163.50698 0.31304 0.00018243 -0.2702 -0.00015746 0.042844 2.4968E-05 582.7608650072857 65.468 0.80996 59.292 58.803 59.613 -6.1757 79 45 3 0 0 0 0.018301 2 42364 42364;42503 65.235 42.499 1 31479000 19793 985 13630 13874 23301;23302 23301 160 -0.0682337781388469 HPEPASGLAAL 11 Unmodified _HPEPASGLAAL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7831420898438 2 531.782556 1061.55056 0.89518 0.00047604 -0.35438 -0.00018845 0.5408 0.00028759 531.7823468148853 46.079 0.41153 46.079 45.882 46.294 0 34 19 2 0 0 0 0.018566 1 25126 25126 58.679 25.893 1 14966000 19794 7904 13631 13875 23303 23303 0.022245549549097632 HPEPASGLAAL 11 Unmodified _HPEPASGLAAL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.782556 1061.55056 0.37657 0.00020025 -2.444 -0.0012997 -2.0674 -0.0010994 531.7807860659381 46.272 0.19512 45.936 45.82 46.015 -0.33664 -0.071714 -0.0021409 NaN 58.679 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2565600 19795 7904 13631 13875 0.022245549549097632 HPEPTDHVL 9 Unmodified _HPEPTDHVL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7611083984375 2 522.759081 1043.50361 -0.068575 -3.5848E-05 1.5748 0.00082322 1.5062 0.00078737 522.7600315051491 25.125 0.24032 25.125 25.02 25.26 0 18 12 2 0 0 0 0.2143 1 12868 12868 21.747 10.106 1 701340 19796 4151 13632 13876 23304 23304 -0.016403045962533724 HPEPTERVVVF 11 Unmodified _HPEPTERVVVF_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2338256835938 3 437.234822 1308.68264 0.049701 2.1731E-05 0.15703 6.8657E-05 0.20673 9.0388E-05 437.2350081878684 44.161 0.23346 44.161 44.051 44.284 0 28 11 3 0 0 0 0.056186 1 23993 23993 33.821 21.594 1 9785400 19797 4590 13633 13877 23305 23305 0.04064159971835579 HPEPTERVVVF 11 Unmodified _HPEPTERVVVF_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.3499755859375 2 655.348594 1308.68264 -0.21655 -0.00014192 0.51599 0.00033815 0.29944 0.00019624 655.3490939631916 44.174 0.29129 44.174 44.051 44.342 0 34 14 3 0 0 0 0.029988 1 23998 23998 55.235 44.411 1 21050000 19798 4590 13633 13877 23306 23306 0.04064159971835579 HPEPTERVVVF 11 Unmodified _HPEPTERVVVF_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3490600585938 2 655.348594 1308.68264 NaN NaN NaN NaN NaN NaN NaN 44.358 1 44.042 43.542 44.542 -0.31585 0 0 0 0.034254 1 23663 23663 67.081 40.813 1 19799 4590 13633 13877 23307 23307 0.04064159971835579 HPEPTERVVVF 11 Unmodified _HPEPTERVVVF_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3486938476562 2 655.348594 1308.68264 0.67731 0.00044387 0.36773 0.00024099 1.045 0.00068486 655.3486335195283 48.749 0.47089 43.353 43.069 43.54 -5.3961 62 27 3 0 0 0 8.4394E-07 2 30267 30267;30391 104.48 74.644 1 106670000 19800 4590 13633 13877 23308;23309 23308 0.04064159971835579 HPEPTERVVVF 11 Unmodified _HPEPTERVVVF_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-3|GRHL1;ENST00000497403.5_1_2:10101229-10104576:+|nuORF ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5704650878906 3 437.234822 1308.68264 0.96716 0.00042288 0.21277 9.3031E-05 1.1799 0.00051591 437.23481723087207 48.679 0.42076 43.283 43.084 43.505 -5.3961 42 24 3 0 0 0 0.16515 1 30348 30348 23.016 14.264 1 42407000 19801 4590 13633 13877 23310 23310 0.04064159971835579 HPEQDAGKVF 10 Unmodified _HPEQDAGKVF_ 0 0 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.27783203125 2 564.277638 1126.54072 -0.099589 -5.6196E-05 0.90579 0.00051112 0.8062 0.00045492 564.2784067199889 22.924 0.23933 22.924 22.796 23.036 0 21 13 2 0 0 0 0.32072 1 11653 11653 26.268 14.628 1 1482000 19802 896 13634 13878 23311 23311 -0.017486330504880243 HPEQDAGKVF 10 Unmodified _HPEQDAGKVF_ 0 0 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.27880859375 2 564.277638 1126.54072 0.077086 4.3498E-05 0.35969 0.00020297 0.43678 0.00024646 564.277978159315 25.466 0.27097 22.583 22.406 22.677 -2.8831 22 14 2 0 0 0 0.047829 1 13930 13930 59.368 32.485 1 2793200 19803 896 13634 13878 23312 23312 -0.017486330504880243 HPERLKEYI 9 Unmodified _HPERLKEYI_ 0 0 0 ENST00000295598.9_1_1:116947247-116947373:+|nuORF ENST00000295598.9_1_1:116947247-116947373:+|nuORF ENST00000295598.9_1_1:116947247-116947373:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.2250061035156 3 395.552262 1183.63496 NaN NaN NaN NaN NaN NaN NaN 22.008 1 19.273 18.773 19.773 -2.7348 0 0 0 0.83329 1 11822 11822 4.1895 1.1172 1 19804 11491 13635 13879 23313 23313 0.05048505771674172 HPERPQLCRY 10 Carbamidomethyl (C) _HPERPQLC(Carbamidomethyl (C))RY_ HPERPQLC(1)RY HPERPQLC(55)RY 0 1 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.894287109375 3 452.559422 1354.65644 0.77662 0.00035147 0.59208 0.00026795 1.3687 0.00061942 452.55955036897717 22.323 0.4073 19.588 19.374 19.781 -2.7348 47 21 3 0 0 0 0.061642 1 12037 12037 55.249 46.804 1 8240500 19805 7091 13636 13880 23314 23314 692 -0.006704324712927701 HPERVLGVL 9 Unmodified _HPERVLGVL_ 0 0 0 ENST00000403305.5_1_22:38349131-38349489:-|nuORF ENST00000403305.5_1_22:38349131-38349489:-|nuORF ENST00000403305.5_1_22:38349131-38349489:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3056030273438 2 510.303458 1018.59236 NaN NaN NaN NaN NaN NaN NaN 88.768 1 88.816 88.316 89.316 0.047852 0 0 0 0.84369 1 49387 49387 2.3027 1.5091 1 19806 12905 13637 13881 23315 23315 0.08381155434108223 HPERVSYVL 9 Unmodified _HPERVSYVL_ 0 0 0 nc|ENSG00000151651|P78325-3|ADAM8;ENSG00000151651|ENST00000445355|ADAM8;ENST00000559180.1_1_10:135086915-135090354:-|nuORF;ENST00000537099.5_1_10:135085588-135089062:-|nuORF nc|ENSG00000151651|P78325-3|ADAM8 nc|ENSG00000151651|P78325-3|ADAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2984619140625 2 550.298373 1098.58219 -0.14912 -8.2061E-05 -0.31878 -0.00017543 -0.4679 -0.00025749 550.2981494555365 35.18 0.30843 35.18 34.998 35.306 0 34 15 3 0 0 0 0.13231 1 18547 18547 29.841 11.694 1 5177500 19807 6131 13638 13882 23316 23316 0.03684547708849095 HPERVSYVL 9 Unmodified _HPERVSYVL_ 0 0 0 nc|ENSG00000151651|P78325-3|ADAM8;ENSG00000151651|ENST00000445355|ADAM8;ENST00000559180.1_1_10:135086915-135090354:-|nuORF;ENST00000537099.5_1_10:135085588-135089062:-|nuORF nc|ENSG00000151651|P78325-3|ADAM8 nc|ENSG00000151651|P78325-3|ADAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2975463867188 2 550.298373 1098.58219 -0.34509 -0.0001899 0.11839 6.5152E-05 -0.2267 -0.00012475 550.2983434096723 35.248 0.25662 35.026 34.895 35.151 -0.2224 17 11 2 0 0 0 0.19361 1 18474 18474 23.79 5.6434 1 2039100 19808 6131 13638 13882 23317 23317 0.03684547708849095 HPESERISM 9 Oxidation (M) _HPESERISM(Oxidation (M))_ HPESERISM(1) HPESERISM(60) 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2535400390625 2 551.253305 1100.49206 0.13794 7.6038E-05 0.24171 0.00013324 0.37965 0.00020928 551.2536247033554 14.713 0.24396 12.21 12.123 12.367 -2.5029 119 40 4 0 0 0 0.023481 1 7459 7459 60.074 22.1 1 20772000 19809 3108 13639 13883 23318 23318 544 -0.054168696818805984 HPESERISM 9 Unmodified _HPESERISM_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2559814453125 2 543.255848 1084.49714 0.024806 1.3476E-05 -0.53062 -0.00028826 -0.50581 -0.00027478 543.2557823729777 23.281 0.45197 20.503 20.305 20.757 -2.7784 116 37 4 0 0 0 0.085319 3 12502 12502;12613;12720 36.506 18.36 1 50334000 19810 3108 13639 13884 23319;23320;23321 23319 -0.041725658192717674 HPESERISM 9 Unmodified _HPESERISM_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5068969726562 3 362.506324 1084.49714 0.8091 0.0002933 -0.95516 -0.00034625 -0.14606 -5.2948E-05 362.5063049493896 23.319 0.35952 20.54 20.359 20.718 -2.7784 62 31 4 0 0 0 0.06294 2 12642 12532;12642 38.615 20.242 1 12763000 19811 3108 13639 13884 23322;23323 23323 -0.041725658192717674 HPESHVLVL 9 Unmodified _HPESHVLVL_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7872924804688 2 515.787641 1029.56073 0.33084 0.00017064 -0.57284 -0.00029546 -0.242 -0.00012482 515.7871981768255 39.452 0.41776 39.452 39.244 39.661 0 46 19 3 0 0 0 0.03327 1 21101 21101 53.576 23.351 1 12064000 19812 4056 13640 13885 23324 23324 0.04713162680127425 HPESHVLVL 9 Unmodified _HPESHVLVL_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7872924804688 2 515.787641 1029.56073 -0.107 -5.5188E-05 0.3004 0.00015494 0.1934 9.9752E-05 515.7874628904053 39.552 0.19722 39.255 39.133 39.33 -0.29716 14 8 2 0 0 0 0.14602 1 20851 20851 28.487 6.7402 1 1604300 19813 4056 13640 13885 23325 23325 0.04713162680127425 HPESVSQSL 9 Unmodified _HPESVSQSL_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2424621582031 2 492.243264 982.471974 -0.27789 -0.00013679 -1.5556 -0.00076575 -1.8335 -0.00090254 492.2434789488917 24.228 0.2896 24.228 24.078 24.368 0 40 18 3 0 0 0 0.39863 1 12345 12345 12.532 3.9383 1 2387500 19814 10161 13641 13886 23326 23326 -0.019962973501833403 HPETIVLDPLP 11 Unmodified _HPETIVLDPLP_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8389892578125 2 615.840071 1229.66559 0.51652 0.0003181 0.022934 1.4124E-05 0.53946 0.00033222 615.8401593955482 68.817 0.302 68.817 68.656 68.958 0 24 12 3 0 0 0 0.30985 1 38350 38350 26.268 16.724 1 988040 19815 1854 13642 13887 23327 23327 0.05994239366032161 HPETLSAFCP 10 Unmodified _HPETLSAFCP_ 0 0 0 ENST00000301618.8_1_17:74865029-74878335:+|nuORF ENST00000301618.8_1_17:74865029-74878335:+|nuORF ENST00000301618.8_1_17:74865029-74878335:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.25390625 2 551.255317 1100.49608 NaN NaN NaN NaN NaN NaN NaN 14.138 1 14.138 13.638 14.638 0 0 0 0 0.94014 1 6700 6700 6.2058 0 1 19816 11571 13643 13888 23328 23328 -0.050147801881848864 HPETLYAWE 9 Unmodified _HPETLYAWE_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-3|CD22;ENST00000602224.5_1_19:35823460-35823868:+|nuORF nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2666625976562 2 573.266739 1144.51892 NaN NaN NaN NaN NaN NaN NaN 3.8974 1 3.8911 3.3911 4.3911 -0.0062969 0 0 0 0.85737 1 1977 1977 0.6015 0 1 19817 456 13644 13889 23329 23329 -0.047554377990763896 HPETLYAWE 9 Unmodified _HPETLYAWE_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-3|CD22;ENST00000602224.5_1_19:35823460-35823868:+|nuORF nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2659301757812 2 573.266739 1144.51892 NaN NaN NaN NaN NaN NaN NaN 5.8396 1 5.8407 5.3407 6.3407 0.0010915 0 0 0 0.85737 1 2939 2939 0.6015 0 1 19818 456 13644 13889 23330 23330 -0.047554377990763896 HPETNLPVG 9 Unmodified _HPETNLPVG_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2495422363281 2 482.248349 962.482145 1.4388 0.00069388 0.80353 0.0003875 2.2424 0.0010814 482.24899985819684 35.891 0.40212 31.698 31.512 31.914 -4.1928 39 25 2 0 0 0 0.16226 1 20876 20876 26.884 7.6267 1 9627100 19819 9647 13645 13890 23331 23331 -0.000596896249362544 HPETNLPVGY 10 Unmodified _HPETNLPVGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7802124023438 2 563.780013 1125.54547 -0.28557 -0.000161 0.39545 0.00022295 0.10988 6.1949E-05 563.7802492295612 41.072 0.51092 41.072 40.93 41.441 0 69 27 4 0 0 0 0.011118 2 22169 22064;22169 85.642 53.336 1 81358000 19820 9647 13646 13891 23332;23333 23333 -0.012277489076950587 HPETNLPVGY 10 Unmodified _HPETNLPVGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2789306640625 2 563.780013 1125.54547 0.080214 4.5223E-05 -1.6756 -0.00094465 -1.5953 -0.00089942 563.7800294888493 41.44 0.3509 41.137 40.863 41.214 -0.30304 44 16 4 0 0 0 0.18021 1 21910 21910 36.127 9.2434 1 11080000 19821 9647 13646 13891 23334 23334 -0.012277489076950587 HPETNLPVGY 10 Unmodified _HPETNLPVGY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7799072265625 2 563.780013 1125.54547 0.59119 0.0003333 0.99948 0.00056349 1.5907 0.00089678 563.7806757373795 46.518 0.48294 41.437 41.189 41.672 -5.0805 132 71 2 0 0 0 0.041224 3 28701 28613;28701;28854 62.573 41.737 1 153620000 19822 9647 13646 13891 23335;23336;23337 23336 -0.012277489076950587 HPETPDVCEI 10 Carbamidomethyl (C) _HPETPDVC(Carbamidomethyl (C))EI_ HPETPDVC(1)EI HPETPDVC(68)EI 0 1 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7669677734375 2 598.766245 1195.51794 0.051742 3.0981E-05 0.58313 0.00034916 0.63487 0.00038014 598.7667803979457 43.813 0.34526 39.048 38.843 39.188 -4.7648 37 21 2 0 0 0 0.02987 1 26675 26675 68.081 11.904 1 10928000 + 19823 22827 13647 13892 23338 23338 1047 -0.07200020230266091 HPEVTPLRF 9 Unmodified _HPEVTPLRF_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.3001098632812 2 548.300916 1094.58728 NaN NaN NaN NaN NaN NaN NaN 45.749 1 45.425 44.925 45.925 -0.32425 0 0 0 0.023257 1 24457 24457 114.65 55.97 1 19824 2250 13648 13893 23339 23339 0.0437685157148735 HPEVTPLRF 9 Unmodified _HPEVTPLRF_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MSMS AL20221201_MKP_PDAC_01 4 548.302001953125 2 548.300916 1094.58728 NaN NaN NaN NaN NaN NaN NaN 49.993 1 44.454 43.954 44.954 -5.5391 0 0 0 0.00086531 1 31300 31300 134.3 82.027 1 19825 2250 13648 13893 23340 23340 0.0437685157148735 HPEVTPLRF 9 Unmodified _HPEVTPLRF_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MSMS AL20221201_MKP_PDAC_01 4 365.8705444335938 3 365.869703 1094.58728 NaN NaN NaN NaN NaN NaN NaN 50.009 1 44.47 43.97 44.97 -5.5391 0 0 0 0.056448 1 31313 31313 41.956 26.998 1 19826 2250 13648 13893 23341 23341 0.0437685157148735 HPEVTPLRF 9 Unmodified _HPEVTPLRF_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MSMS AL20221201_MKP_PDAC_01 4 548.3021850585938 2 548.300916 1094.58728 NaN NaN NaN NaN NaN NaN NaN 50.17 1 44.63 44.13 45.13 -5.5391 0 0 0 0.018164 1 31437 31437 118.89 60.216 1 19827 2250 13648 13893 23342 23342 0.0437685157148735 HPEVVALLVD 10 Unmodified _HPEVVALLVD_ 0 0 0 nc|ENSG00000261239|Q6NSI1|ANKRD26P1 nc|ENSG00000261239|Q6NSI1|ANKRD26P1 nc|ENSG00000261239|Q6NSI1|ANKRD26P1 MSMS AL20221201_MKP_PDAC_01 4 364.54150390625 3 364.541363 1090.60226 NaN NaN NaN NaN NaN NaN NaN 25.885 1 22.934 22.434 23.434 -2.9511 0 0 0 0.9731 1 14206 14206 3.5871 0.26742 1 19828 16595 13649 13894 23343 23343 0.06058298648804339 HPEVVPFLY 9 Unmodified _HPEVVPFLY_ 0 0 0 nc|ENSG00000204209|Q9UER7-2|DAXX;DAXX|p.P280Lfs*14|1|0.55|ENSG00000204209|chr6:33320938-33320938|C/-|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;ENSG00000204209|ENST00000374542|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7922973632812 2 550.792392 1099.57023 0.73894 0.000407 -0.8884 -0.00048932 -0.14946 -8.232E-05 550.7921501532367 73.772 0.25033 73.296 73.144 73.394 -0.47588 17 11 2 0 0 0 0.11784 1 40364 40364 42.095 13.608 1 2060100 19829 16504 13650 13895 23344 23344 0.024429309656625264 HPEYAKIFTTY 11 Unmodified _HPEYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.3428344726562 2 685.342978 1368.6714 0.72919 0.00049975 -0.22823 -0.00015642 0.50096 0.00034333 685.3427576799074 49.596 0.25604 49.204 49.077 49.333 -0.3923 28 12 3 0 0 0 0.12646 1 26658 26658 40.725 39.072 1 3252100 19830 1461 13651 13896 23345 23345 0.001813378777114849 HPEYAKIFTTY 11 Unmodified _HPEYAKIFTTY_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000562299.1_1_16:55612978-55617007:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.3425903320312 2 685.342978 1368.6714 0.68478 0.00046931 0.31832 0.00021816 1.0031 0.00068747 685.8445146146784 49.308 0.30547 49.265 49.07 49.376 -0.04369 36 14 3 0 0 0 0.011225 1 26591 26591 59.368 52.267 1 4006800 19831 1461 13651 13896 23346 23346 0.001813378777114849 HPFALSLWS 9 Unmodified _HPFALSLWS_ 0 0 0 REV__ENST00000552596.1_1_12:49952428-49952862:-|nuORF REV__ENST00000552596.1_1_12:49952428-49952862:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.279052734375 2 529.276909 1056.53927 1.1901 0.00062991 1.1608 0.00061441 2.351 0.0012443 529.778154299175 94.566 0.98059 88.391 87.806 88.787 -6.1757 159 56 4 0 0 0 0.078417 3 62694 62448;62574;62694 38.151 13.283 1 28658000 + 19832 28728 13652 13897 23347;23348;23349 23349 0.013257776514137731 HPFALSLWS 9 Unmodified _HPFALSLWS_ 0 0 0 REV__ENST00000552596.1_1_12:49952428-49952862:-|nuORF REV__ENST00000552596.1_1_12:49952428-49952862:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.279052734375 2 529.276909 1056.53927 1.1901 0.00062991 1.1608 0.00061441 2.351 0.0012443 529.778154299175 94.566 0.98059 88.391 87.806 88.787 -6.1757 159 56 4 0 0 0 0.097209 1 62694 62694 38.151 12.752 1 28658000 + 19833 28728 13652 13897 23350 23350 0.013257776514137731 HPFAPPICF 9 Carbamidomethyl (C) _HPFAPPIC(Carbamidomethyl (C))F_ HPFAPPIC(1)F HPFAPPIC(56)F 0 1 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.2662353515625 2 543.265487 1084.51642 NaN NaN NaN NaN NaN NaN NaN 82.535 1 76.359 75.859 76.859 -6.1757 0 0 0 0.053568 1 54220 54220 56.048 31.374 1 19834 6090 13653 13898 23351 23351 606 -0.02245564737722816 HPFAPPICF 9 Carbamidomethyl (C) _HPFAPPIC(Carbamidomethyl (C))F_ HPFAPPIC(1)F HPFAPPIC(56)F 0 1 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.2670288085938 2 543.265487 1084.51642 NaN NaN NaN NaN NaN NaN NaN 82.708 1 76.532 76.032 77.032 -6.1757 0 0 0 0.053568 1 54346 54346 56.048 31.374 1 19835 6090 13653 13898 23352 23352 606 -0.02245564737722816 HPFAPPICF 9 Carbamidomethyl (C) _HPFAPPIC(Carbamidomethyl (C))F_ HPFAPPIC(1)F HPFAPPIC(56)F 0 1 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.2659301757812 2 543.265487 1084.51642 NaN NaN NaN NaN NaN NaN NaN 82.918 1 76.743 76.243 77.243 -6.1757 0 0 0 0.053568 1 54496 54496 56.048 28.42 1 19836 6090 13653 13898 23353 23353 606 -0.02245564737722816 HPFDQRIIL 9 Unmodified _HPFDQRIIL_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8231811523438 2 569.822015 1137.62948 0.74415 0.00042403 0.51095 0.00029115 1.2551 0.00071518 569.8223130884118 52.267 0.31554 51.833 51.669 51.985 -0.43367 37 15 3 0 0 0 0.2289 1 28189 28189 21.537 7.6309 1 3671600 19837 7321 13654 13899 23354 23354 0.06616826979848156 HPFDQRIIL 9 Unmodified _HPFDQRIIL_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8230590820312 2 569.822015 1137.62948 0.36016 0.00020522 0.46357 0.00026415 0.82372 0.00046937 569.8225958945555 51.959 0.51885 51.9 51.67 52.189 -0.058918 73 24 4 0 0 0 0.12357 2 28086 28086;28194 32.786 19.743 1 5563600 19838 7321 13654 13899 23355;23356 23355 0.06616826979848156 HPFDQRIIL 9 Unmodified _HPFDQRIIL_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.3245849609375 2 569.822015 1137.62948 1.1359 0.00064725 -0.43639 -0.00024867 0.69949 0.00039858 570.3235503912072 57.542 0.22199 51.515 51.428 51.65 -6.0275 17 11 2 0 0 0 0.028502 1 36865 36865 57.722 19.748 1 10229000 19839 7321 13654 13899 23357 23357 0.06616826979848156 HPFEDGAKL 9 Unmodified _HPFEDGAKL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2563781738281 2 507.256174 1012.49779 -0.17246 -8.7479E-05 0.31452 0.00015954 0.14206 7.2061E-05 507.25626538985966 28.896 0.35896 28.896 28.704 29.063 0 50 17 4 0 0 0 0.008513 2 14991 14894;14991 99.755 6.9331 1 12888000 19840 8786 13655 13900 23358;23359 23359 -0.007954031079066226 HPFEDGAKL 9 Unmodified _HPFEDGAKL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2563781738281 2 507.256174 1012.49779 0.81049 0.00041113 -0.4643 -0.00023552 0.34619 0.00017561 507.2558822729924 32.49 0.55265 28.634 28.352 28.904 -3.8562 86 30 5 0 0 0 0.0086209 2 18550 18422;18550 89.401 34.627 1 74930000 19841 8786 13655 13900 23360;23361 23361 -0.007954031079066226 HPFENMVAF 9 Oxidation (M) _HPFENM(Oxidation (M))VAF_ HPFENM(1)VAF HPFENM(55)VAF 0 0 1 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.250732421875 2 554.250034 1106.48552 0.81013 0.00044901 0.44014 0.00024395 1.2503 0.00069296 554.2500129789877 47.712 0.44991 47.359 47.105 47.555 -0.3526 52 21 3 0 0 0 0.031062 2 25656 25550;25656 54.774 31.625 1 5147200 19842 4720 13656 13901 23362;23363 23363 854 -0.06346762842599674 HPFENMVAF 9 Oxidation (M) _HPFENM(Oxidation (M))VAF_ HPFENM(1)VAF HPFENM(44)VAF 0 0 1 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.2957763671875 2 554.250034 1106.48552 0.92459 0.00051245 0.52748 0.00029235 1.4521 0.00080481 554.2504316384732 53.437 0.25695 47.633 47.529 47.786 -5.8042 25 16 2 0 0 0 0.079233 1 33710 33710 43.858 23.405 1 17053000 19843 4720 13656 13901 23364 23364 854 -0.06346762842599674 HPFEVPREY 9 Unmodified _HPFEVPREY_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2872924804688 2 587.288005 1172.56146 0.052804 3.1011E-05 0.039078 2.295E-05 0.091882 5.3961E-05 587.2879445930356 37.399 0.23388 37.399 37.259 37.493 0 30 12 3 0 0 0 0.14859 1 19860 19860 29.841 11.706 1 5711600 19844 7266 13657 13902 23365 23365 -0.01792042670808769 HPFEVPREY 9 Unmodified _HPFEVPREY_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2880859375 2 587.288005 1172.56146 -0.089262 -5.2423E-05 -0.085287 -5.0088E-05 -0.17455 -0.00010251 587.2880535987931 37.777 0.28491 37.505 37.375 37.66 -0.27133 28 13 3 0 0 0 0.094905 1 19837 19837 36.506 26.432 1 4222500 19845 7266 13657 13902 23366 23366 -0.01792042670808769 HPFEVPREY 9 Unmodified _HPFEVPREY_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.5682983398438 3 391.861096 1172.56146 1.0508 0.00041176 -0.16776 -6.574E-05 0.88302 0.00034602 391.86116996224206 42.095 0.32097 37.411 37.2 37.521 -4.6846 33 19 2 0 0 0 0.19633 1 25298 25298 14.405 7.3037 1 11081000 19846 7266 13657 13902 23367 23367 -0.01792042670808769 HPFFESVTW 9 Unmodified _HPFFESVTW_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MSMS AL20221201_MKP_PDAC_01 4 575.2710571289062 2 575.271824 1148.5291 NaN NaN NaN NaN NaN NaN NaN 90.047 1 83.872 83.372 84.372 -6.1757 0 0 0 0.096036 1 59454 59454 44.407 19.733 1 19847 5293;16515 13658 13903 23368 23368 -0.03922830073793193 HPFFGRVVL 9 Unmodified _HPFFGRVVL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3084716796875 2 536.308544 1070.60253 -0.15057 -8.0752E-05 0.068403 3.6685E-05 -0.082168 -4.4067E-05 536.3085208623563 56.325 0.28452 56.256 56.115 56.4 -0.068737 34 14 3 0 0 0 0.026094 2 30598 30598;30706 57.471 57.471 1 21356000 19848 3218 13659 13904 23369;23370 23369 0.07005763159327216 HPFFKDMSL 9 Oxidation (M) _HPFFKDM(Oxidation (M))SL_ HPFFKDM(1)SL HPFFKDM(46)SL 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2731323242188 2 569.273509 1136.53247 0.81394 0.00046336 -1.8282 -0.0010407 -1.0142 -0.00057739 569.2731533995291 43.121 0.50719 38.356 38.111 38.618 -4.7648 112 34 6 0 0 0 0.047788 1 26172 26172 45.7 9.5726 1 70852000 19849 1682 13660 13905 23371 23371 284 -0.03033903291475326 HPFFKDMSL 9 Unmodified _HPFFKDMSL_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.27587890625 2 561.276052 1120.53755 1.1113 0.00062376 0.70399 0.00039513 1.8153 0.0010189 561.2765250562446 80.139 0.69717 73.964 73.599 74.296 -6.1757 71 41 2 0 0 0 0.024189 1 52734 52734 59.368 21.394 1 28133000 19850 1682 13660 13906 23372 23372 -0.017895994288437578 HPFFKDMSL 9 Unmodified _HPFFKDMSL_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2764892578125 2 561.276052 1120.53755 0.90185 0.00050619 -0.10161 -5.7034E-05 0.80024 0.00044915 561.275939773051 80.623 0.65128 74.448 74.258 74.909 -6.1757 51 35 2 0 0 0 0.0089732 2 52876 52876;53004 86.332 35.477 1 17979000 19851 1682 13660 13906 23373;23374 23373 -0.017895994288437578 HPFFKTIDF 9 Unmodified _HPFFKTIDF_ 0 0 0 ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 ENST00000441107.5_1_6:149982867-150018260:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2974243164062 2 576.297842 1150.58113 0.4765 0.0002746 -0.38817 -0.0002237 0.088329 5.0904E-05 576.2978556547005 59.432 0.5612 59.379 59.193 59.754 -0.053059 48 28 2 0 0 0 0.047194 1 32370 32370 41.956 20.209 1 17149000 19852 4288 13661 13907 23375 23375 0.011863333399332987 HPFFKTIDF 9 Unmodified _HPFFKTIDF_ 0 0 0 ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1 ENST00000441107.5_1_6:149982867-150018260:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 576.2980346679688 2 576.297842 1150.58113 NaN NaN NaN NaN NaN NaN NaN 88.742 1 82.566 82.066 83.066 -6.1757 0 0 0 0.029307 1 58556 58556 72.968 47.569 1 19853 4288 13661 13907 23376 23376 0.011863333399332987 HPFFNDFTF 9 Unmodified _HPFFNDFTF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.265380859375 2 586.263999 1170.51345 0.81748 0.00047926 0.83025 0.00048674 1.6477 0.000966 586.2646495327402 80.36 0.46454 79.871 79.665 80.129 -0.48932 42 18 3 0 0 0 0.042911 2 44067 43961;44067 48.346 32.499 1 1494500 19854 6006 13662 13908 23377;23378 23378 -0.06499116590862286 HPFFNDFTF 9 Unmodified _HPFFNDFTF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.2661743164062 2 586.263999 1170.51345 0.40921 0.00023991 0.86132 0.00050496 1.2705 0.00074487 586.2647146741347 79.772 0.54388 79.827 79.523 80.067 0.05497 62 21 4 0 0 0 0.042911 2 44018 44018;44119 48.346 34.44 1 27728000 19855 6006 13662 13908 23379;23380 23379 -0.06499116590862286 HPFFNDFTF 9 Unmodified _HPFFNDFTF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2648315429688 2 586.263999 1170.51345 1.3792 0.00080859 -0.26803 -0.00015714 1.1112 0.00065146 586.2641004759197 97.542 0.50803 91.366 91.044 91.553 -6.1757 80 28 4 0 0 0 0.013323 2 64630 64503;64630 71.134 44.25 1 80604000 19856 6006 13662 13908 23381;23382 23382 -0.06499116590862286 HPFFSAIDF 9 Unmodified _HPFFSAIDF_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7590942382812 2 540.761092 1079.50763 0.11468 6.2015E-05 -0.05298 -2.8649E-05 0.061702 3.3366E-05 540.7609191229213 78.934 0.39809 78.448 78.265 78.663 -0.48596 26 16 2 0 0 0 0.013472 1 43231 43231 70.716 22.37 1 1701100 19857 6056 13663 13909 23383 23383 -0.028942151025376006 HPFFSAIDF 9 Unmodified _HPFFSAIDF_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7611083984375 2 540.761092 1079.50763 0.33241 0.00017975 0.21069 0.00011393 0.5431 0.00029369 540.7611975611139 78.331 0.47292 78.384 78.177 78.65 0.052452 50 19 3 0 0 0 0.0094915 2 43216 43216;43325 81.864 47.762 1 14947000 19858 6056 13663 13909 23384;23385 23384 -0.028942151025376006 HPFFSAIDF 9 Unmodified _HPFFSAIDF_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7618408203125 2 540.761092 1079.50763 1.0752 0.00058142 -0.415 -0.00022442 0.66019 0.000357 540.7612203267706 97.09 0.47673 90.915 90.622 91.099 -6.1757 51 27 3 0 0 0 0.0094915 2 64304 64304;64434 81.864 47.762 1 53308000 19859 6056 13663 13909 23386;23387 23386 -0.028942151025376006 HPFFVGVQY 9 Unmodified _HPFFVGVQY_ 0 0 0 ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2771606445312 2 547.276909 1092.53927 NaN NaN NaN NaN NaN NaN NaN 61.696 1 61.664 61.164 62.164 -0.032787 0 0 0 0.098163 1 33677 33677 49.669 3.648 1 19860 8141 13664 13910 23388 23388 -0.0033022234856616706 HPFFVKLYF 9 Unmodified _HPFFVKLYF_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;ENST00000570136.5_1_16:2611779-2611935:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3252563476562 2 599.326402 1196.63825 0.099978 5.992E-05 -0.10902 -6.5338E-05 -0.0090409 -5.4185E-06 599.3262283541839 75.068 0.42427 75.114 74.984 75.409 0.045959 32 20 2 0 0 0 0.020973 2 41398 41398;41504 60.39 34.99 1 7955700 19861 5293;16515 13665 13911 23389;23390 23389 0.04779800616324792 HPFFVKLYF 9 Unmodified _HPFFVKLYF_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;ENST00000570136.5_1_16:2611779-2611935:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.8287353515625 2 599.326402 1196.63825 0.96597 0.00057893 -2.1585 -0.0012937 -1.1926 -0.00071473 599.325339927191 98.276 0.23845 92.1 91.924 92.163 -6.1757 21 15 2 0 0 0 0.055398 1 65078 65078 43.858 13.222 1 32877000 19862 5293;16515 13665 13911 23391 23391 0.04779800616324792 HPFGSSINSF 10 Unmodified _HPFGSSINSF_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.26318359375 2 546.759081 1091.50361 0.43351 0.00023702 1.9416 0.0010616 2.3751 0.0012986 547.2625172620735 46.483 0.2938 46.146 46.015 46.309 -0.33664 22 14 2 0 0 0 0.24625 1 24923 24923 30.637 8.8899 1 3855700 19863 5978 13666 13912 23392 23392 -0.03848304596226626 HPFGSSINSF 10 Unmodified _HPFGSSINSF_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.759033203125 2 546.759081 1091.50361 0.76748 0.00041962 0.1969 0.00010766 0.96438 0.00052728 546.7589692651115 46.23 0.24842 46.197 46.059 46.307 -0.033417 23 11 3 0 0 0 0.24625 1 24886 24886 30.637 14.789 1 2438800 19864 5978 13666 13912 23393 23393 -0.03848304596226626 HPFHATPNTY 10 Unmodified _HPFHATPNTY_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.777587890625 2 592.777805 1183.54106 -0.32672 -0.00019367 -1.0881 -0.000645 -1.4148 -0.00083868 592.7775164259133 22.777 0.13769 22.777 22.694 22.832 0 10 6 2 0 0 0 0.051739 1 11593 11593 57.471 39.325 1 854160 19865 14119 13667 13913 23394 23394 -0.04337213330609302 HPFHATPNTY 10 Unmodified _HPFHATPNTY_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7770385742188 2 592.777805 1183.54106 -0.039026 -2.3134E-05 -1.1361 -0.00067347 -1.1752 -0.00069661 592.7767623564287 22.81 0.24245 22.822 22.658 22.9 0.012396 15 9 2 0 0 0 0.016642 1 11591 11591 78.728 38.778 1 3390700 19866 14119 13667 13913 23395 23395 -0.04337213330609302 HPFHATPNTY 10 Unmodified _HPFHATPNTY_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF;ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910-4|EZH2;nc|ENSG00000106462|Q15910|EZH2 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.77783203125 2 592.777805 1183.54106 -0.15975 -9.4696E-05 -0.57581 -0.00034133 -0.73556 -0.00043602 592.7777170826034 26.038 0.28611 23.087 22.913 23.199 -2.9511 34 17 3 0 0 0 0.0093042 2 14247 14247;14366 88.954 64.933 1 18214000 19867 14119 13667 13913 23396;23397 23396 -0.04337213330609302 HPFHATPNVY 10 Unmodified _HPFHATPNVY_ 0 0 0 nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000586103.5_1_17:40855746-40880959:-|nuORF nc|ENSG00000108799|Q92800-5|EZH1 nc|ENSG00000108799|Q92800-5|EZH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7896118164062 2 591.788173 1181.56179 0.6387 0.00037797 -1.0896 -0.00064482 -0.45093 -0.00026685 591.7874857571406 29.118 0.15767 29.056 28.992 29.15 -0.062159 15 6 3 0 0 0 0.39779 1 15059 15059 21.747 8.7042 1 3541800 19868 2607 13668 13914 23398 23398 -0.02172622950956793 HPFHATPNVY 10 Unmodified _HPFHATPNVY_ 0 0 0 nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000586103.5_1_17:40855746-40880959:-|nuORF nc|ENSG00000108799|Q92800-5|EZH1 nc|ENSG00000108799|Q92800-5|EZH1 MSMS AL20221201_MKP_PDAC_01 4 591.788330078125 2 591.788173 1181.56179 NaN NaN NaN NaN NaN NaN NaN 33.1 1 29.244 28.744 29.744 -3.8562 0 0 0 0.027208 1 18953 18953 92.491 61.855 1 19869 2607 13668 13914 23399 23399 -0.02172622950956793 HPFHRDLLRY 10 Unmodified _HPFHRDLLRY_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9109497070312 3 451.910672 1352.71019 NaN NaN NaN NaN NaN NaN NaN 28.635 1 28.664 28.164 29.164 0.029564 0 0 0 0.78727 1 14913 14913 12.856 8.14 1 19870 1574 13669 13915 23400 23400 0.04794108022747423 HPFIDDYQY 9 Unmodified _HPFIDDYQY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2649536132812 2 599.264196 1196.51384 NaN NaN NaN NaN NaN NaN NaN 48.121 1 48.121 47.621 48.621 0 0 0 0 0.43505 1 26381 26381 18.135 7.3111 1 19871 983 13670 13916 23401 23401 -0.07655741661665161 HPFISMQVNT 10 Unmodified _HPFISMQVNT_ 0 0 0 REV__ENST00000602883.1_1_1:7848131-7848524:+|nuORF REV__ENST00000602883.1_1_1:7848131-7848524:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 586.8485107421875 2 587.289691 1172.56483 0.67732 0.00039778 -1.9518 -0.0011463 -1.2745 -0.00074851 587.2887121758911 42.143 0.38898 37.459 37.186 37.575 -4.6846 57 24 3 0 0 0 0.22316 1 25312 25312 20.415 0 1 24373000 + 19872 29270 13671 13917 23402 23402 -0.014551158884387405 HPFIVKLHY 9 Unmodified _HPFIVKLHY_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6 ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2222290039062 3 385.222076 1152.6444 0.47983 0.00018484 -0.057872 -2.2294E-05 0.42195 0.00016255 385.2221230208886 42.71 0.24922 42.701 42.581 42.83 -0.0088234 30 11 3 0 0 0 0.07087 1 22851 22851 39.95 27.709 1 20698000 19873 8664;1054;1071 13672 13918 23403 23403 0.07418318847862793 HPFIVKLHY 9 Unmodified _HPFIVKLHY_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENSG00000072133|ENST00000262752|RPS6KA6 ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000071242|ENST00000265678|RPS6KA2;nc|ENSG00000072133|Q9UK32-2|RPS6KA6 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2229614257812 3 385.222076 1152.6444 1.7925 0.00069052 -0.96885 -0.00037322 0.82368 0.0003173 385.2218223157736 79.377 0.91599 73.202 72.743 73.659 -6.1757 111 52 3 0 0 0 0.15471 1 52067 52067 27.629 14.586 1 20473000 19874 8664;1054;1071 13672 13918 23404 23404 0.07418318847862793 HPFIYIIRH 9 Unmodified _HPFIYIIRH_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5634765625 3 399.229342 1194.6662 0.40978 0.0001636 -0.011466 -4.5776E-06 0.39832 0.00015902 399.2294204654741 43.032 0.2185 43.016 42.864 43.083 -0.015667 20 9 3 0 0 0 0.016184 1 23037 23037 51.63 38.757 1 4806100 19875 10392 13673 13919 23405 23405 0.07665123596393641 HPFKDLVQL 9 Unmodified _HPFKDLVQL_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.811279296875 2 548.811116 1095.60768 0.13324 7.3125E-05 1.9095 0.001048 2.0428 0.0011211 548.8114191110965 51.79 0.42823 51.731 51.533 51.961 -0.058918 55 20 4 0 0 0 0.018061 1 27997 27997 62.573 8.7399 1 20578000 19876 2983 13674 13920 23406 23406 0.06370022231271832 HPFKFSDH 8 Unmodified _HPFKFSDH_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7423400878906 2 507.743234 1013.47191 -0.78959 -0.00040091 0.45194 0.00022947 -0.33765 -0.00017144 507.7435567357271 19.662 0.094944 19.691 19.634 19.729 0.028357 11 7 2 0 0 0 0.62219 1 9923 9923 24.021 4.5816 1 320750 19877 16120 13675 13921 23407 23407 -0.034282525595244806 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.1846618652344 3 393.185691 1176.53524 -0.59215 -0.00023283 -1.3118 -0.00051577 -1.9039 -0.0007486 393.18494377007033 29.812 0.29114 29.812 29.702 29.994 0 33 16 3 0 0 0 0.047714 1 15459 15459 45.74 34.94 1 5259100 19878 16120 13676 13922 23408 23408 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1861877441406 3 393.185691 1176.53524 0.67179 0.00026414 -0.45649 -0.00017948 0.2153 8.4655E-05 393.1855091665314 29.787 0.555 29.707 29.501 30.056 -0.080431 60 23 3 0 0 0 0.013609 3 15376 15376;15482;15581 70.332 51.959 1 179700000 19879 16120 13676 13922 23409;23410;23411 23409 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2742919921875 2 589.274898 1176.53524 0.6243 0.00036788 -1.4093 -0.00083046 -0.78499 -0.00046258 589.2738593652024 29.779 0.25137 29.699 29.643 29.895 -0.080429 17 11 2 0 0 0 0.012228 1 15463 15463 62.573 33.491 1 4630800 19880 16120 13676 13922 23412 23412 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1856079101562 3 393.185691 1176.53524 -0.10105 -3.9733E-05 -0.22161 -8.7134E-05 -0.32267 -0.00012687 393.1856008417684 29.547 0.49495 29.577 29.451 29.946 0.030106 58 21 4 0 0 0 0.010301 2 15389 15389;15498 79.596 52.373 1 210840000 19881 16120 13676 13922 23413;23414 23413 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.274169921875 2 589.274898 1176.53524 0.08148 4.8014E-05 -1.5358 -0.00090498 -1.4543 -0.00085697 589.2736266150259 29.561 0.18559 29.591 29.488 29.674 0.030106 12 8 2 0 0 0 0.0082981 1 15417 15417 96.111 57.935 1 3995600 19882 16120 13676 13922 23415 23415 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2738647460938 2 589.274898 1176.53524 0.42026 0.00024765 0.31164 0.00018364 0.7319 0.00043129 589.2749641595133 32.811 0.41162 28.955 28.732 29.144 -3.8562 62 22 4 0 0 0 0.0048194 2 18697 18697;18823 118.89 92.627 1 82991000 19883 16120 13676 13922 23416;23417 23416 -0.04596311842283285 HPFKFSDHY 9 Unmodified _HPFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.185791015625 3 393.185691 1176.53524 0.76633 0.00030131 -0.14147 -5.5622E-05 0.62486 0.00024569 393.1855076539951 32.833 0.80949 28.977 28.652 29.461 -3.8562 129 47 5 0 0 0 0.013609 3 18721 18721;18845;19028 70.332 60.017 1 1181100000 19884 16120 13676 13922 23418;23419;23420 23418 -0.04596311842283285 HPFKFSDHYY 10 Unmodified _HPFKFSDHYY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.5408325195312 3 447.540134 1339.59857 -0.57599 -0.00025778 1.2012 0.0005376 0.62525 0.00027982 447.54083539511424 36.297 0.24588 36.047 35.906 36.152 -0.2497 41 10 5 0 0 0 0.38092 1 19024 19024 30.703 24.073 1 11838000 19885 16120 13677 13923 23421 23421 -0.05764371125042089 HPFKFSDHYY 10 Unmodified _HPFKFSDHYY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.5398559570312 3 447.540134 1339.59857 0.24438 0.00010937 -0.35999 -0.00016111 -0.11562 -5.1744E-05 447.54017548148397 35.906 0.3103 35.931 35.786 36.096 0.024971 62 14 5 0 0 0 0.14923 1 18962 18962 47.732 45.101 1 38962000 19886 16120 13677 13923 23422 23422 -0.05764371125042089 HPFKFSDHYY 10 Unmodified _HPFKFSDHYY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5405578613281 3 447.540134 1339.59857 0.61959 0.00027729 0.57305 0.00025646 1.1926 0.00053375 447.54039949543653 40.395 0.42529 35.865 35.672 36.097 -4.5294 72 27 4 0 0 0 0.077785 2 24143 24015;24143 37.771 31.988 1 63341000 19887 16120 13677 13923 23423;23424 23424 -0.05764371125042089 HPFKFSDHYY 10 Unmodified _HPFKFSDHYY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MSMS AL20221201_MKP_PDAC_01 4 670.8071899414062 2 670.806562 1339.59857 NaN NaN NaN NaN NaN NaN NaN 40.488 1 35.959 35.459 36.459 -4.5294 0 0 0 0.033371 1 24185 24185 61.602 44.66 1 19888 16120 13677 13923 23425 23425 -0.05764371125042089 HPFKIFTKM 9 Oxidation (M) _HPFKIFTKM(Oxidation (M))_ HPFKIFTKM(1) HPFKIFTKM(46) 0 0 1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.21337890625 3 388.879322 1163.61614 -0.29561 -0.00011496 -0.070579 -2.7447E-05 -0.36619 -0.0001424 388.8793965505257 31.521 0.47439 31.551 31.174 31.648 0.030106 60 20 4 0 0 0 0.047194 1 16476 16476 46.022 36.639 1 26835000 19889 7662 13678 13924 23426 23426 1310 0.04087252876252023 HPFKIFTKM 9 Unmodified _HPFKIFTKM_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5477600097656 3 383.547684 1147.62122 1.2011 0.00046069 1.2095 0.00046391 2.4107 0.0009246 383.54779516524155 45.8 0.28537 40.845 40.713 40.999 -4.9549 38 18 3 0 0 0 0.42 1 28208 28208 11.518 6.221 1 13989000 19890 7662 13678 13925 23427 23427 0.05331556738860854 HPFKIFTKM 9 Unmodified _HPFKIFTKM_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5485534667969 3 383.547684 1147.62122 1.4776 0.00056673 -0.10134 -3.8869E-05 1.3763 0.00052786 383.54755137340277 87.253 0.63437 81.077 80.643 81.277 -6.1757 65 34 2 0 0 0 0.18178 2 57387 57387;57513 24.957 15.193 1 48104000 19891 7662 13678 13925 23428;23429 23428 0.05331556738860854 HPFLAERIISM 11 Unmodified _HPFLAERIISM_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS AL20221201_MKP_PDAC_01 4 657.3572998046875 2 657.355365 1312.69618 NaN NaN NaN NaN NaN NaN NaN 92.648 1 86.472 85.972 86.972 -6.1757 0 0 0 0.69598 1 61276 61276 17.049 4.8079 1 19892 2714 13679 13926 23430 23430 0.05233694479443329 HPFLAIYEL 9 Unmodified _HPFLAIYEL_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8008422851562 2 551.800217 1101.58588 0.84999 0.00046902 -0.44995 -0.00024828 0.40003 0.00022074 551.7998864616072 81.383 0.34538 80.891 80.77 81.116 -0.49248 35 14 3 0 0 0 0.16776 1 44586 44586 26.341 4.5946 1 1036700 19893 4122 13680 13927 23431 23431 0.03915217482699518 HPFLAIYEL 9 Unmodified _HPFLAIYEL_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8003540039062 2 551.800217 1101.58588 0.56689 0.00031281 0.11729 6.4719E-05 0.68418 0.00037753 551.8003968455265 80.69 0.28683 80.747 80.628 80.915 0.057587 24 10 3 0 0 0 0.023761 1 44619 44619 59.795 8.9402 1 4021300 19894 4122 13680 13927 23432 23432 0.03915217482699518 HPFLAIYEL 9 Unmodified _HPFLAIYEL_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7999877929688 2 551.800217 1101.58588 1.5163 0.00083667 -0.39073 -0.0002156 1.1255 0.00062107 551.800289616179 98.231 0.24276 92.056 91.891 92.134 -6.1757 26 15 2 0 0 0 0.040472 1 65144 65144 49.669 19.444 1 22098000 19895 4122 13680 13927 23433 23433 0.03915217482699518 HPFLFFIQH 9 Unmodified _HPFLFFIQH_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3134765625 2 593.313826 1184.6131 -0.050505 -2.9966E-05 0.20009 0.00011872 0.14958 8.875E-05 593.3142151627325 72.765 0.28079 72.807 72.64 72.921 0.041725 32 13 4 0 0 0 0.0090851 1 40070 40070 85.357 66.1 1 4531200 19896 3799 13681 13928 23434 23434 0.02817745813763395 HPFLFFIQH 9 Unmodified _HPFLFFIQH_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MSMS AL20221201_MKP_PDAC_01 4 593.3175659179688 2 593.313826 1184.6131 NaN NaN NaN NaN NaN NaN NaN 95.533 1 89.358 88.858 89.858 -6.1757 0 0 0 0.035065 1 63278 63278 64.236 36.608 1 19897 3799 13681 13928 23435 23435 0.02817745813763395 HPFLNLNTM 9 Oxidation (M) _HPFLNLNTM(Oxidation (M))_ HPFLNLNTM(1) HPFLNLNTM(54) 0 0 1 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3 ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7702026367188 2 551.771134 1101.52771 0.27965 0.0001543 -0.68812 -0.00037969 -0.40847 -0.00022538 551.7709411713378 48.948 0.52185 48.904 48.654 49.175 -0.04369 56 25 3 0 0 0 0.03327 1 26403 26403 53.576 36.633 1 5463200 19898 4671 13682 13929 23436 23436 844 -0.018987874342428768 HPFLNLNTM 9 Oxidation (M) _HPFLNLNTM(Oxidation (M))_ 0 0 1 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3 ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.771134 1101.52771 0.67486 0.00037237 -0.13213 -7.2905E-05 0.54273 0.00029946 551.7710741205077 49.382 0.265 48.99 48.757 49.022 -0.3923 0.042936 0.00050633 NaN 53.576 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1382600 19899 4671 13682 13929 844 -0.018987874342428768 HPFLPNVDF 9 Unmodified _HPFLPNVDF_ 0 0 0 ENSG00000109181|ENST00000265403|UGT2B10;nc|ENSG00000109181|P36537-2|UGT2B10;ENSG00000213759|ENST00000446444|UGT2B11 ENSG00000109181|ENST00000265403|UGT2B10 ENSG00000109181|ENST00000265403|UGT2B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2728271484375 2 543.274367 1084.53418 -0.6704 -0.00036421 -2.5489 -0.0013847 -3.2193 -0.0017489 543.2729665120625 30.416 0.44756 30.416 30.139 30.587 0 52 21 3 0 0 0 0.032796 1 15742 15742 53.833 15.657 1 7766500 19900 2638 13683 13930 23437 23437 -0.004705262112111086 HPFLSGAETF 10 Unmodified _HPFLSGAETF_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2706298828125 2 553.269281 1104.52401 0.63521 0.00035144 0.59412 0.00032871 1.2293 0.00068015 553.2696996453575 53.713 0.51793 53.261 52.943 53.461 -0.45173 67 25 4 0 0 0 0.0071864 1 29044 29044 92.822 52.865 1 17580000 19901 1612 13684 13931 23438 23438 -0.02407133936435457 HPFLSGAETF 10 Unmodified _HPFLSGAETF_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2669067382812 2 553.269281 1104.52401 0.96569 0.00053428 -1.8782 -0.0010391 -0.91247 -0.00050484 553.267694079917 59.876 0.52787 53.761 53.572 54.1 -6.1147 69 29 3 0 0 0 0.043729 2 38416 38416;38551 61.357 14.294 1 103470000 19902 1612 13684 13931 23439;23440 23439 -0.02407133936435457 HPFLSGAETF 10 Unmodified _HPFLSGAETF_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.269281 1104.52401 -0.00084573 -4.6792E-07 0.25701 0.00014219 0.25616 0.00014173 553.2694419450552 53.375 0.16209 53.312 53.219 53.381 -0.063423 0.13902 -0.00069617 NaN 92.822 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1259100 19903 1612 13684 13931 -0.02407133936435457 HPFLTALKY 9 Unmodified _HPFLTALKY_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1 nc|ENSG00000105221|P31751-2|AKT2;nc|ENSG00000142208|P31749-2|AKT1 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3088989257812 2 545.30821 1088.60187 0.62462 0.00034061 -0.25735 -0.00014034 0.36726 0.00020027 545.3080119783766 50.772 0.43586 50.718 50.55 50.986 -0.053871 63 21 4 0 0 0 0.0081 2 27410 27410;27521 103.35 74.867 1 48536000 19904 2289;5402 13685 13932 23441;23442 23441 0.061109237195978494 HPFLTALKY 9 Unmodified _HPFLTALKY_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1 nc|ENSG00000105221|P31751-2|AKT2;nc|ENSG00000142208|P31749-2|AKT1 nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3081665039062 2 545.30821 1088.60187 0.14183 7.7343E-05 -0.82191 -0.00044819 -0.68008 -0.00037085 545.3082674797674 56.141 0.47784 50.164 49.897 50.375 -5.9769 56 27 3 0 0 0 0.0085857 2 35752 35752;35884 110.67 62.329 1 49798000 19905 2289;5402 13685 13932 23443;23444 23443 0.061109237195978494 HPFLVGLHY 9 Unmodified _HPFLVGLHY_ 0 0 0 nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3 nc|ENSG00000288602|Q96BR1-2|SGK3 nc|ENSG00000288602|Q96BR1-2|SGK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7927856445312 2 541.792727 1081.5709 0.041775 2.2633E-05 -0.80072 -0.00043383 -0.75895 -0.00041119 541.7930669439883 55.326 0.25771 55.257 55.138 55.395 -0.068737 20 12 2 0 0 0 0.042911 1 30077 30077 45.75 34.926 1 1758400 19906 2184 13686 13933 23445 23445 0.03337770405391893 HPFLVGLHY 9 Unmodified _HPFLVGLHY_ 0 0 0 nc|ENSG00000288602|Q96BR1-2|SGK3;ENSG00000104205|ENST00000521198|SGK3 nc|ENSG00000288602|Q96BR1-2|SGK3 nc|ENSG00000288602|Q96BR1-2|SGK3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 541.792727 1081.5709 -0.42323 -0.0002293 -0.34013 -0.00018428 -0.76335 -0.00041358 541.7935645144133 55.318 0.19575 55.318 55.241 55.437 0 0.030445 0.00021862 NaN 45.75 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1016100 19907 2184 13686 13933 0.03337770405391893 HPFLVGLRY 9 Unmodified _HPFLVGLRY_ 0 0 0 ENSG00000101049|ENST00000373100|SGK2;nc|ENSG00000101049|Q9HBY8-3|SGK2;nc|ENSG00000101049|Q9HBY8-1|SGK2 ENSG00000101049|ENST00000373100|SGK2 ENSG00000101049|ENST00000373100|SGK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7944946289062 2 551.313826 1100.6131 0.049667 2.7382E-05 4.176 0.0023023 4.2257 0.0023297 551.8174116401985 55.317 0.33887 55.248 55.138 55.477 -0.068737 27 16 2 0 0 0 0.17718 1 30030 30030 20.454 7.9221 1 3095000 19908 1905 13687 13934 23446 23446 0.06681745813762063 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.8167114257812 2 670.817127 1339.6197 0.15177 0.00010181 -0.98484 -0.00066064 -0.83306 -0.00055883 670.8164242366126 38.292 0.55035 38.292 38.089 38.639 0 118 38 4 0 0 0 0.035244 2 20380 20380;20485 65.474 35.633 1 137730000 19909 1980 13688 13935 23447;23448 23447 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.5472412109375 3 447.547177 1339.6197 0.54167 0.00024242 -0.97887 -0.00043809 -0.4372 -0.00019567 447.5468522727306 38.31 0.35002 38.31 38.165 38.515 0 74 28 3 0 0 0 0.13391 2 20396 20396;20508 29.437 21.96 1 37805000 19910 1980 13688 13935 23449;23450 23449 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.81640625 2 670.817127 1339.6197 -0.0035813 -2.4024E-06 -0.57617 -0.0003865 -0.57975 -0.00038891 670.8166612030637 38.683 0.51844 38.396 38.154 38.673 -0.28687 98 24 5 0 0 0 0.087164 3 20292 20292;20392;20510 49.527 37.287 1 353580000 19911 1980 13688 13935 23451;23452;23453 23451 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.8830871582031 3 447.547177 1339.6197 -0.067474 -3.0198E-05 -0.026957 -1.2064E-05 -0.09443 -4.2262E-05 447.5471630353308 38.693 0.43435 38.406 38.196 38.63 -0.28687 69 20 4 0 0 0 0.085354 2 20308 20308;20415 49.527 24.034 1 89930000 19912 1980 13688 13935 23454;23455 23454 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.8118286132812 2 670.817127 1339.6197 0.34052 0.00022842 -1.7396 -0.001167 -1.3991 -0.00093855 670.8155714164494 38.292 0.32997 38.309 38.13 38.46 0.01704 51 14 5 0 0 0 0.18439 2 20307 20307;20412 35.612 25.538 1 24000000 19913 1980 13688 13935 23456;23457 23456 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3193969726562 2 670.817127 1339.6197 0.44146 0.00029614 -0.39337 -0.00026388 0.048083 3.2255E-05 670.8167916127775 43.135 1.1149 38.371 38.073 39.188 -4.7648 236 73 5 0 0 0 1.5072E-15 5 26000 26000;26136;26272;26413;26695 173.69 133.45 1 1025699999.9999999 19914 1980 13688 13935 23458;23459;23460;23461;23462 23458 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.8825378417969 3 447.547177 1339.6197 0.83223 0.00037246 -0.072373 -3.239E-05 0.75986 0.00034007 447.5470962860197 43.127 0.87393 38.362 38.111 38.985 -4.7648 196 57 5 0 0 0 0.085354 4 26025 26025;26158;26290;26487 42.312 30.896 1 588890000 19915 1980 13688 13935 23463;23464;23465;23466 23463 -0.03652405816183091 HPFLYDRETY 10 Unmodified _HPFLYDRETY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 447.547177 1339.6197 0.45458 0.00020345 -0.35458 -0.00015869 0.1 4.4755E-05 447.5469474126727 38.297 0.28371 38.314 38.151 38.434 0.01704 -0.033747 -0.00015309 NaN 49.527 34 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6513600 19916 1980 13688 13935 -0.03652405816183091 HPFMTAVDL 9 Oxidation (M) _HPFM(Oxidation (M))TAVDL_ HPFM(1)TAVDL HPFM(82)TAVDL 0 0 1 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4 ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7516479492188 2 523.75241 1045.49027 0.58979 0.0003089 -0.73846 -0.00038677 -0.14867 -7.7866E-05 523.751974973219 49.474 0.29549 49.082 48.943 49.238 -0.3923 35 14 3 0 0 0 0.0094915 1 26572 26572 81.864 47.762 1 13491000 19917 3178 13689 13936 23467 23467 561 -0.03065878699840141 HPFMTAVDL 9 Oxidation (M) _HPFM(Oxidation (M))TAVDL_ HPFM(1)TAVDL HPFM(82)TAVDL 0 0 1 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4 ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7529296875 2 523.75241 1045.49027 0.71024 0.00037199 -0.31586 -0.00016543 0.39437 0.00020655 523.752169700912 49.858 0.39132 49.466 49.258 49.65 -0.3923 33 19 2 0 0 0 0.0094915 1 26802 26802 81.864 47.762 1 11706000 19918 3178 13689 13936 23468 23468 561 -0.03065878699840141 HPFMTAVDL 9 Oxidation (M) _HPFM(Oxidation (M))TAVDL_ HPFM(1)TAVDL HPFM(71)TAVDL 0 0 1 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4 ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7504272460938 2 523.75241 1045.49027 1.2179 0.0006379 -1.8381 -0.00096271 -0.62015 -0.00032481 523.7515368003169 55.519 0.27994 49.598 49.426 49.706 -5.9211 28 16 2 0 0 0 0.013472 1 35392 35392 70.716 22.967 1 15154000 19919 3178 13689 13936 23469 23469 561 -0.03065878699840141 HPFMTAVDL 9 Oxidation (M) _HPFM(Oxidation (M))TAVDL_ 0 0 1 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4 ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.75241 1045.49027 0.28625 0.00014992 0.71876 0.00037645 1.005 0.00052637 523.7526116222559 49.129 0.13031 49.086 49.004 49.134 -0.04369 0.0019755 0.0011655 NaN 81.864 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 569270 19920 3178 13689 13936 561 -0.03065878699840141 HPFMTAVDL 9 Unmodified _HPFMTAVDL_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4 ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7565307617188 2 515.754953 1029.49535 0.59302 0.00030586 0.294 0.00015163 0.88703 0.00045749 515.7549350186755 66.401 0.52467 60.225 59.965 60.489 -6.1757 58 29 3 0 0 0 0.0094915 2 43098 43098;43223 81.864 81.864 1 34972000 19921 3178 13689 13937 23470;23471 23470 -0.018215748372085727 HPFNKDGYRY 10 Unmodified _HPFNKDGYRY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;nc|ENSG00000129691|Q9UBL3-2|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.8739013671875 3 432.875516 1295.60472 0.63421 0.00027453 -0.068239 -2.9539E-05 0.56597 0.00024499 433.21041484349064 22.507 0.2163 19.728 19.594 19.81 -2.7784 25 11 3 0 0 0 0.17253 1 12099 12099 32.616 22.466 1 3396500 19922 4159 13690 13938 23472 23472 -0.03125852893526826 HPFPCPTSY 9 Carbamidomethyl (C) _HPFPC(Carbamidomethyl (C))PTSY_ HPFPC(1)PTSY HPFPC(82)PTSY 0 1 0 ENSG00000127948|ENST00000461988|POR;ENST00000487247.5_1_7:75612990-75614618:+|nuORF ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2424926757812 2 553.242209 1104.46987 0.62951 0.00034827 -0.64907 -0.00035909 -0.019555 -1.0819E-05 553.2421681567233 44.529 0.68038 39.677 39.452 40.133 -4.852 110 51 3 0 0 0 0.0094915 3 27204 27068;27204;27339 81.864 51.228 1 24730000 19923 4035 13691 13939 23473;23474;23475 23474 408 -0.07819049359636665 HPFPESKPVL 10 Unmodified _HPFPESKPVL_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3179321289062 2 575.816399 1149.61824 -0.015809 -9.1032E-06 1.4833 0.00085409 1.4675 0.00084499 575.8173322394591 37.456 0.35809 37.184 36.992 37.35 -0.27133 32 14 3 0 0 0 0.54684 1 19658 19658 13.906 2.2658 1 1171800 19924 3366 13692 13940 23476 23476 0.04942004885697315 HPFPESKPVL 10 Unmodified _HPFPESKPVL_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.816650390625 2 575.816399 1149.61824 1.6954 0.00097623 -1.2928 -0.0007444 0.4026 0.00023183 575.8157252786241 41.752 0.37523 37.144 36.985 37.36 -4.6079 36 23 2 0 0 0 0.11824 1 25098 25098 43.772 31.532 1 6820900 19925 3366 13692 13940 23477 23477 0.04942004885697315 HPFPFHPSL 9 Unmodified _HPFPFHPSL_ 0 0 0 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7763061523438 2 539.777077 1077.5396 -0.19639 -0.00010601 -1.3574 -0.00073268 -1.5538 -0.00083869 539.7766430235391 51.356 0.50986 51.302 51.087 51.597 -0.053875 76 25 5 0 0 0 0.016184 1 27816 27816 67.344 35.038 1 7222200 19926 2813 13693 13941 23478 23478 0.003931973712724357 HPFPSPATDLY 11 Unmodified _HPFPSPATDLY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8005981445312 2 622.800946 1243.58734 0.34622 0.00021563 0.25472 0.00015864 0.60093 0.00037426 622.8014084629111 53.856 0.95848 53.39 52.863 53.822 -0.46664 114 47 4 0 0 0 0.012451 2 29124 29124;29234 65.235 47.089 1 8192300 19927 728 13694 13942 23479;23480 23479 -0.024711932191848973 HPFPSPATDLY 11 Unmodified _HPFPSPATDLY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.3024291992188 2 622.800946 1243.58734 0.72243 0.00044993 0.74897 0.00046646 1.4714 0.00091639 622.801410883723 60.168 0.45733 54.053 53.78 54.238 -6.1147 50 23 3 0 0 0 0.00015283 2 38665 38665;38803 92.491 66.223 1 38176000 19928 728 13694 13942 23481;23482 23481 -0.024711932191848973 HPFPSPATDLY 11 Unmodified _HPFPSPATDLY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 622.800946 1243.58734 0.54139 0.00033718 -0.90421 -0.00056314 -0.36282 -0.00022597 622.8000486948382 53.233 0.18661 53.233 53.141 53.327 0 -0.078412 -0.0011338 NaN 65.235 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 861580 19929 728 13694 13942 -0.024711932191848973 HPFPSWPFH 9 Unmodified _HPFPSWPFH_ 0 0 0 REV__nc|ENSG00000204960|A4D250|BLACE REV__nc|ENSG00000204960|A4D250|BLACE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5178527832031 3 384.518893 1150.53485 NaN NaN NaN NaN NaN NaN NaN 25.279 1 25.262 24.762 25.762 -0.017006 0 0 0 0.82015 1 12942 12942 2.9952 0 1 + 19930 29912 13695 13943 23483 23483 -0.0343968677148041 HPFPTPYSNTF 11 Unmodified _HPFPTPYSNTF_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.307861328125 2 654.306395 1306.59824 0.25923 0.00016962 0.36794 0.00024074 0.62717 0.00041036 654.3063260403933 55.107 0.30251 54.629 54.471 54.774 -0.47798 31 14 3 0 0 0 0.025642 1 29889 29889 56.177 33.441 1 1605000 19931 5064 13696 13944 23484 23484 -0.04279790844930176 HPFPTPYSNTF 11 Unmodified _HPFPTPYSNTF_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.306640625 2 654.306395 1306.59824 0.69483 0.00045463 0.10247 6.7048E-05 0.7973 0.00052168 654.3061964016273 54.811 0.39817 54.744 54.542 54.94 -0.066936 45 19 3 0 0 0 0.025642 2 29731 29731;29854 56.177 37.675 1 5811700 19932 5064 13696 13944 23485;23486 23485 -0.04279790844930176 HPFPTPYSNTF 11 Unmodified _HPFPTPYSNTF_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8080444335938 2 654.306395 1306.59824 0.95074 0.00062208 0.16356 0.00010702 1.1143 0.00072909 654.8078530568497 61.222 0.32972 55.075 54.865 55.195 -6.1478 26 16 2 0 0 0 9.0947E-09 1 39442 39442 110.67 74.169 1 22626000 19933 5064 13696 13944 23487 23487 -0.04279790844930176 HPFQERHVY 9 Unmodified _HPFQERHVY_ 0 0 0 nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.86865234375 3 404.868473 1211.58359 -0.53548 -0.0002168 0.50026 0.00020254 -0.035225 -1.4262E-05 404.8685295833277 18.675 0.13134 18.698 18.639 18.77 0.023106 29 17 2 0 0 0 0.51218 1 9377 9377 10.8 8.8931 1 554580 19934 7046 13697 13945 23488 23488 -0.013738182023871559 HPFQERHVY 9 Unmodified _HPFQERHVY_ 0 0 0 nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8690795898438 3 404.868473 1211.58359 1.2809 0.0005186 0.4994 0.00020219 1.7803 0.00072079 404.86868314370275 20.806 0.27145 18.113 17.934 18.205 -2.693 33 18 2 0 0 0 0.069655 1 11047 11047 31.636 21.485 1 5749300 19935 7046 13697 13945 23489 23489 -0.013738182023871559 HPFQTPSSSN 10 Unmodified _HPFQTPSSSN_ 0 0 0 REV__ENST00000453671.5_1_3:194310325-194310655:+|nuORF REV__ENST00000453671.5_1_3:194310325-194310655:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2532958984375 2 551.25162 1100.48869 NaN NaN NaN NaN NaN NaN NaN 14.656 1 14.656 14.156 15.156 0 0 0 0 0.95736 1 6984 6984 5.2969 0.066215 1 + 19936 27233 13698 13946 23490 23490 -0.057537964642278894 HPFRDLTQL 9 Unmodified _HPFRDLTQL_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8046264648438 2 563.803823 1125.59309 0.63991 0.00036078 -0.094266 -5.3147E-05 0.54564 0.00030764 563.8037374726844 43.782 0.20824 43.766 43.637 43.845 -0.015667 19 9 3 0 0 0 0.0081887 1 23454 23454 93.166 43.233 1 34407000 19937 5110 13699 13947 23491 23491 0.035319500831292316 HPFRDLTQL 9 Unmodified _HPFRDLTQL_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.8040161132812 2 563.803823 1125.59309 1.1032 0.00062197 -0.48867 -0.00027551 0.61449 0.00034645 563.8035059500426 49.735 0.42451 44.196 44 44.424 -5.5391 34 26 2 0 0 0 0.0082981 1 31192 31192 96.936 55.096 1 53540000 19938 5110 13699 13947 23492 23492 0.035319500831292316 HPFRDLTQL 9 Unmodified _HPFRDLTQL_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MSMS AL20221201_MKP_PDAC_01 4 376.2056579589844 3 376.204974 1125.59309 NaN NaN NaN NaN NaN NaN NaN 49.711 1 44.172 43.672 44.672 -5.5391 0 0 0 0.34649 1 31089 31089 16.566 3.7099 1 19939 5110 13699 13947 23493 23493 0.035319500831292316 HPFSGPSVFTF 11 Unmodified _HPFSGPSVFTF_ 0 0 0 nc|ENSG00000140948|Q8WYQ9|ZCCHC14;nc|ENSG00000140948|Q8WYQ9-2|ZCCHC14;ENSG00000140948|ENST00000671377|ZCCHC14 nc|ENSG00000140948|Q8WYQ9|ZCCHC14 nc|ENSG00000140948|Q8WYQ9|ZCCHC14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3360595703125 2 611.798206 1221.58186 0.54675 0.0003345 1.9118 0.0011696 2.4585 0.0015041 611.7982249392893 74.006 0.27755 74.05 73.904 74.182 0.043976 35 12 4 0 0 0 0.19471 1 40781 40781 36.127 11.136 1 1900500 19940 5285 13700 13948 23494 23494 -0.020068720109975402 HPFSVIYRY 9 Unmodified _HPFSVIYRY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8128051757812 2 591.308741 1180.60293 1.1421 0.00067531 -0.044008 -2.6022E-05 1.0981 0.00064929 591.3087103920475 46.901 0.48612 46.868 46.51 46.996 -0.033417 44 23 3 0 0 0 0.020973 2 25211 25211;25309 62.573 31.936 1 26246000 19941 1901 13701 13949 23495;23496 23495 0.01985138088525673 HPFSVIYRY 9 Unmodified _HPFSVIYRY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5418395996094 3 394.541586 1180.60293 1.0861 0.00042851 -0.097357 -3.8412E-05 0.98874 0.0003901 394.5414285209208 46.877 0.18225 46.844 46.774 46.956 -0.033417 12 8 2 0 0 0 0.042911 1 25256 25256 36.506 27.53 1 2648600 19942 1901 13701 13949 23497 23497 0.01985138088525673 HPFTEYIFR 9 Unmodified _HPFTEYIFR_ 0 0 0 ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ENSG00000047936|ENST00000368507|ROS1 ENSG00000047936|ENST00000368507|ROS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.3046264648438 2 605.306198 1208.59784 NaN NaN NaN NaN NaN NaN NaN 22.735 1 22.735 22.235 23.235 0 0 0 0 0.84737 1 11570 11570 1.8442 0 1 19943 695 13702 13950 23498 23498 0.0018883422587805399 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.8052978515625 2 595.303655 1188.59276 0.69654 0.00041465 -0.64458 -0.00038372 0.051961 3.0932E-05 595.3034658836394 29.116 0.26452 29.054 28.9 29.164 -0.062159 18 11 3 0 0 0 0.16005 1 15008 15008 38.615 19.253 1 4666000 19944 781 13703 13951 23499 23499 0.006005303632719006 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2054748535156 3 397.204862 1188.59276 0.63755 0.00025324 -0.082192 -3.2647E-05 0.55536 0.00022059 397.20489832422334 29.105 0.25016 29.043 28.9 29.15 -0.062159 11 10 2 0 0 0 0.62068 1 15072 15072 5.7834 2.1964 1 3384200 19945 781 13703 13951 23500 23500 0.006005303632719006 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3035278320312 2 595.303655 1188.59276 -0.049469 -2.9449E-05 0.18522 0.00011026 0.13575 8.081E-05 595.303770052593 28.948 0.35632 28.978 28.798 29.154 0.030106 35 14 3 0 0 0 1.0182E-10 2 15046 15046;15152 155.95 67 1 13726000 19946 781 13703 13951 23501;23502 23501 0.006005303632719006 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2049255371094 3 397.204862 1188.59276 -0.060779 -2.4142E-05 0.053175 2.1122E-05 -0.007603 -3.02E-06 397.2050497115963 28.948 0.35729 28.978 28.847 29.204 0.030106 29 14 3 0 0 0 0.067957 1 15101 15101 46.022 13.985 1 5286200 19947 781 13703 13951 23503 23503 0.006005303632719006 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3045043945312 2 595.303655 1188.59276 0.32217 0.00019179 0.5922 0.00035254 0.91438 0.00054433 595.3038940133828 32.706 0.44592 28.85 28.582 29.028 -3.8562 63 23 3 0 0 0 0.0032515 2 18569 18569;18684 103.82 52.194 1 55704000 19948 781 13703 13951 23504;23505 23504 0.006005303632719006 HPFTNKPTTF 10 Unmodified _HPFTNKPTTF_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2048034667969 3 397.204862 1188.59276 0.84659 0.00033627 -0.056508 -2.2445E-05 0.79008 0.00031383 397.2045323215189 32.732 0.42748 28.876 28.582 29.01 -3.8562 58 22 3 0 0 0 0.10424 2 18710 18581;18710 39.213 13.192 1 38837000 19949 781 13703 13951 23506;23507 23507 0.006005303632719006 HPFTTHSGYF 10 Unmodified _HPFTTHSGYF_ 0 0 0 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5172424316406 3 398.517329 1192.53016 0.42719 0.00017024 0.42441 0.00016913 0.8516 0.00033938 398.5174978336608 26.352 0.27795 23.401 23.244 23.522 -2.9511 35 14 3 0 0 0 0.47869 1 14476 14476 17.443 3.8278 1 13954000 19950 1113 13704 13952 23508 23508 -0.05840615704892116 HPFVFDIEDY 10 Unmodified _HPFVFDIEDY_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.2933349609375 2 641.292953 1280.57135 -0.015426 -9.8923E-06 0.46707 0.00029953 0.45165 0.00028964 641.2935077305906 77.216 0.28276 77.216 77.033 77.316 0 33 13 3 0 0 0 0.31022 1 42885 42885 26.884 16.06 1 1336600 19951 411 13705 13953 23509 23509 -0.05770899456069856 HPFVFDIEDY 10 Unmodified _HPFVFDIEDY_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.293212890625 2 641.292953 1280.57135 -0.96539 -0.0006191 1.0145 0.00065059 0.049106 3.1492E-05 641.2936551627644 77.619 0.41809 77.137 76.956 77.374 -0.4826 55 19 4 0 0 0 0.011274 2 42565 42463;42565 85.357 64.903 1 5969200 19952 411 13705 13953 23510;23511 23511 -0.05770899456069856 HPFVFDIEDY 10 Unmodified _HPFVFDIEDY_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.2940063476562 2 641.292953 1280.57135 0.18681 0.0001198 0.90344 0.00057937 1.0902 0.00069917 641.2934507236057 77.098 0.2881 77.148 77.033 77.321 0.050102 19 11 2 0 0 0 0.092434 1 42595 42595 48.346 27.892 1 1695300 19953 411 13705 13953 23512 23512 -0.05770899456069856 HPFVFDIEDY 10 Unmodified _HPFVFDIEDY_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.7932739257812 2 641.292953 1280.57135 1.0552 0.00067671 0.14299 9.1699E-05 1.1982 0.00076841 641.2930860568368 94.236 0.52586 88.06 87.806 88.332 -6.1757 77 30 3 0 0 0 0.011274 4 62289 62289;62314;62438;62566 85.357 64.903 1 31456000 19954 411 13705 13953 23513;23514;23515;23516 23513 -0.05770899456069856 HPFVVKLHY 9 Unmodified _HPFVVKLHY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1;ENST00000530607.1_1_1:26872355-26877988:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5502319335938 3 380.550193 1138.62875 0.37203 0.00014158 0.21705 8.2599E-05 0.58908 0.00022418 380.55033859527447 40.16 0.39773 40.165 40.004 40.402 0.0050545 49 16 4 0 0 0 0.044011 2 21373 21373;21478 47.749 39.593 1 20306000 19955 3330;14894 13706 13954 23517;23518 23517 0.06498032330796377 HPFVVKLHY 9 Unmodified _HPFVVKLHY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1;ENST00000530607.1_1_1:26872355-26877988:+|nuORF nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5507507324219 3 380.550193 1138.62875 1.2649 0.00048137 0.54657 0.000208 1.8115 0.00068936 380.55027525663843 75.471 0.51674 69.295 69.026 69.543 -6.1757 66 27 3 0 0 0 0.023481 1 49301 49301 60.074 52.785 1 10828000 19956 3330;14894 13706 13954 23519 23519 0.06498032330796377 HPGAAQRGQGD 11 Unmodified _HPGAAQRGQGD_ 0 0 0 nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2743986-2746461:-|nuORF;ENST00000505186.1_1_4:2743986-2747794:-|nuORF nc|ENSG00000168884|Q8NFZ5-2|TNIP2 nc|ENSG00000168884|Q8NFZ5-2|TNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7689819335938 2 547.260311 1092.50607 0.26338 0.00014414 -0.16586 -9.0771E-05 0.097519 5.3368E-05 547.2601112405624 57.837 0.69979 57.347 57.024 57.724 -0.48974 125 33 5 0 0 0 0.42108 1 31526 31526 20.415 8.7742 1 80418000 19957 7808 13707 13955 23520 23520 -0.03648456138557776 HPGAATVPTM 10 Oxidation (M) _HPGAATVPTM(Oxidation (M))_ HPGAATVPTM(1) HPGAATVPTM(82) 0 0 1 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-6|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2;nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2428894042969 2 499.242209 996.469866 1.149 0.00057362 0.36498 0.00018221 1.514 0.00075584 499.24237871622375 21.82 0.43436 19.085 18.9 19.335 -2.7348 67 24 3 0 0 0 0.013474 2 11762 11650;11762 81.613 55.272 1 8119000 19958 9130;16446 13708 13956 23521;23522 23522 1523 -0.02851049359640001 HPGAKGEPGS 10 Unmodified _HPGAKGEPGS_ 0 0 0 nc|ENSG00000019169|Q9UEW3-2|MARCO;ENSG00000019169|ENST00000327097|MARCO nc|ENSG00000019169|Q9UEW3-2|MARCO nc|ENSG00000019169|Q9UEW3-2|MARCO MSMS AL20221201_MKP_PDAC_01 4 468.7313537597656 2 468.730323 935.446094 NaN NaN NaN NaN NaN NaN NaN 23.247 1 20.469 19.969 20.969 -2.7784 0 0 0 0.37462 1 12572 12572 32.786 4.2988 1 19959 515 13709 13957 23523 23523 -0.024211468017938387 HPGCQRRLH 9 Unmodified _HPGCQRRLH_ 0 0 0 REV__ENSG00000100982|ENST00000372409|PCIF1 REV__ENSG00000100982|ENST00000372409|PCIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5260314941406 3 368.526164 1102.55666 NaN NaN NaN NaN NaN NaN NaN 16.821 1 16.822 16.322 17.322 0.0010548 0 0 0 0.84369 1 8322 8322 1.1933 0 1 + 19960 18120 13710 13958 23524 23524 0.009487947054367396 HPGDQAYEF 9 Unmodified _HPGDQAYEF_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-2|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.227294921875 2 532.227613 1062.44067 0.051981 2.7666E-05 0.050274 2.6757E-05 0.10226 5.4423E-05 532.2274658037938 35.551 0.25251 35.551 35.421 35.674 0 26 12 3 0 0 0 0.024882 1 18781 18781 58.679 28.454 1 6545600 19961 7218 13711 13959 23525 23525 -0.08804870384278729 HPGKLHFVF 9 Unmodified _HPGKLHFVF_ 0 0 0 ENSG00000124275|ENST00000440940|MTRR;nc|ENSG00000124275|Q9UBK8-1|MTRR ENSG00000124275|ENST00000440940|MTRR ENSG00000124275|ENST00000440940|MTRR MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2030639648438 3 361.202905 1080.58688 1.6326 0.00058969 -2.5915 -0.00093605 -0.9589 -0.00034636 361.2013996035717 91.553 0.91474 85.377 84.939 85.853 -6.1757 63 51 2 0 0 0 0.49272 1 60564 60564 4.897 0 1 5991500 19962 3772 13712 13960 23526 23526 0.04981476642274174 HPGLHEDKTEP 11 Unmodified _HPGLHEDKTEP_ 0 0 0 REV__ENSG00000060709|ENST00000690449|RIMBP2 REV__ENSG00000060709|ENST00000690449|RIMBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.5375061035156 3 420.538681 1258.59421 -0.2131 -8.9616E-05 -1.4912 -0.00062711 -1.7043 -0.00071672 420.537948420354 21.703 0.29262 21.726 21.626 21.918 0.022896 20 13 2 0 0 0 0.73992 1 11027 11027 0.50596 0.23694 1 1327800 + 19963 17329 13713 13961 23527 23527 -0.02473880338629897 HPGLILKY 8 Unmodified _HPGLILKY_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7837829589844 2 470.78437 939.554188 -0.27139 -0.00012777 0.53944 0.00025396 0.26804 0.00012619 470.7844919659924 41.804 0.2224 41.497 41.375 41.597 -0.30682 25 10 3 0 0 0 0.21786 1 22155 22155 67.035 30.569 1 12597000 19964 1731 13714 13962 23528 23528 0.081992695194117 HPGLILKY 8 Unmodified _HPGLILKY_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.783935546875 2 470.78437 939.554188 -0.28169 -0.00013262 0.11833 5.5708E-05 -0.16336 -7.6908E-05 470.7843522145576 41.507 0.32069 41.505 41.359 41.68 -0.0017891 46 14 4 0 0 0 0.24071 1 22173 22173 63.563 27.097 1 70597000 19965 1731 13714 13962 23529 23529 0.081992695194117 HPGLILKY 8 Unmodified _HPGLILKY_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7832946777344 2 470.78437 939.554188 NaN NaN NaN NaN NaN NaN NaN 41.691 1 41.69 41.19 42.19 -0.0017929 0 0 0 0.59893 1 22294 22294 34.187 11.735 1 19966 1731 13714 13962 23530 23530 0.081992695194117 HPGLILKY 8 Unmodified _HPGLILKY_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7848815917969 2 470.78437 939.554188 0.66496 0.00031305 0.57304 0.00026978 1.238 0.00058283 470.78455752253035 45.865 0.56364 40.91 40.626 41.19 -4.9549 107 37 4 0 0 0 0.21786 3 28240 28093;28240;28372 67.035 30.569 1 230000000 19967 1731 13714 13962 23531;23532;23533 23532 0.081992695194117 HPGLLFWPL 9 Unmodified _HPGLLFWPL_ 0 0 0 ENST00000592087.1_1_19:36980552-36981209:+|nuORF ENST00000592087.1_1_19:36980552-36981209:+|nuORF ENST00000592087.1_1_19:36980552-36981209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3016967773438 2 540.30547 1078.59639 -0.31429 -0.00016981 -3.4643 -0.0018718 -3.7786 -0.0020416 540.3029186726698 60.737 0.38306 60.247 60.03 60.413 -0.48932 41 18 4 0 0 0 0.46577 1 33064 33064 9.3474 0.75416 1 17877000 19968 15715 13715 13963 23534 23534 0.06023244927791893 HPGLLFWPL 9 Unmodified _HPGLLFWPL_ 0 0 0 ENST00000592087.1_1_19:36980552-36981209:+|nuORF ENST00000592087.1_1_19:36980552-36981209:+|nuORF ENST00000592087.1_1_19:36980552-36981209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3038330078125 2 540.30547 1078.59639 0.31178 0.00016846 -2.4385 -0.0013175 -2.1267 -0.0011491 540.3031922553624 60.337 0.6302 60.294 59.846 60.476 -0.043507 74 32 3 0 0 0 0.22317 1 32982 32982 20.871 2.7249 1 38079000 19969 15715 13715 13963 23535 23535 0.06023244927791893 HPGLPGPGF 9 Unmodified _HPGLPGPGF_ 0 0 0 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.7296142578125 2 439.729595 877.444637 0.5929 0.00026071 -0.82744 -0.00036385 -0.23455 -0.00010314 439.72949995976944 46.83 0.21857 46.494 46.385 46.604 -0.33664 15 10 2 0 0 0 0.047696 1 25088 25088 45.75 17.577 1 2224200 19970 5628 13716 13964 23536 23536 0.0010126390010327668 HPGPPPMGM 9 Oxidation (M) _HPGPPPMGM(Oxidation (M))_ HPGPPPMGM(1) HPGPPPM(-35)GM(35) 0 0 1 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MSMS AL20221201_MKP_PDAC_01 4 468.7074584960938 2 468.706948 935.399343 NaN NaN NaN NaN NaN NaN NaN 25.797 1 22.846 22.346 23.346 -2.9511 0 0 0 0.053568 1 14149 14149 56.048 19.582 2 19971 5498 13717 13965 23537 23537 1010 -0.07094045948940675 HPGPPQQL 8 Unmodified _HPGPPQQL_ 0 0 0 REV__ENST00000437579.1_1_10:105315111-105331334:+|nuORF REV__ENST00000437579.1_1_10:105315111-105331334:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2327575683594 2 437.232502 872.450451 0.64331 0.00028127 1.4797 0.00064697 2.123 0.00092825 437.2333426124814 48.1 0.60414 48.061 47.64 48.244 -0.038643 70 29 4 0 0 0 0.78849 1 25858 25858 9.3474 1.4373 1 18307000 + 19972 27040 13718 13966 23538 23538 0.009123624117705731 HPGPRPAL 8 Unmodified _HPGPRPAL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7441101074219 2 422.743037 843.471521 1.4483 0.00061225 -0.24068 -0.00010175 1.2076 0.0005105 422.7427948017354 21.618 0.25395 18.883 18.8 19.054 -2.7348 22 13 2 0 0 0 0.6895 1 11598 11598 18.135 4.6271 1 1698200 19973 3283 13719 13967 23539 23539 0.043523725112777356 HPGPSDTVVF 10 Unmodified _HPGPSDTVVF_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.261474609375 2 528.261456 1054.50836 NaN NaN NaN NaN NaN NaN NaN 45.311 1 45.311 44.811 45.811 0 0 0 0 0.24983 1 24692 24692 39.957 11.47 1 19974 720 13720 13968 23540 23540 -0.016714204534764576 HPGQISAGY 9 Unmodified _HPGQISAGY_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2278747558594 2 465.227417 928.44028 0.13367 6.2186E-05 0.73607 0.00034244 0.86974 0.00040463 465.22768778597043 24.04 0.30088 24.04 23.873 24.174 0 43 14 4 0 0 0 0.03568 1 12242 12242 52.268 16.224 1 13058000 19975 1933;6461 13721 13969 23541 23541 -0.026802453134678217 HPGQISAGY 9 Unmodified _HPGQISAGY_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2278137207031 2 465.227417 928.44028 0.46022 0.00021411 0.33615 0.00015639 0.79637 0.00037049 465.22767849313 27.206 0.48601 24.17 23.949 24.435 -3.0365 47 24 3 0 0 0 0.070838 1 15073 15073 39.957 13.074 1 50714000 19976 1933;6461 13721 13969 23542 23542 -0.026802453134678217 HPGTCDVWLLK 11 Unmodified _HPGTCDVWLLK_ 0 0 0 REV__ENST00000590639.1_1_17:42152603-42153074:+|nuORF REV__ENST00000590639.1_1_17:42152603-42153074:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.5522766113281 3 423.553386 1267.63833 NaN NaN NaN NaN NaN NaN NaN 14.477 1 14.477 13.977 14.977 0 0 0 0 0.94307 1 6884 6884 0.08335 0 1 + 19977 25119 13722 13970 23543 23543 0.015214325540000573 HPGTVFFSIF 10 Unmodified _HPGTVFFSIF_ 0 0 0 ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5346374511719 3 384.53432 1150.58113 0.26549 0.00010209 0.37738 0.00014512 0.64287 0.0002472 384.53440351380345 60.775 0.3947 60.732 60.553 60.947 -0.04351 67 19 5 0 0 0 0.49559 1 33138 33138 16.566 1.3174 1 67648000 19978 15822 13723 13971 23544 23544 0.011863333399332987 HPGTVFFSIF 10 Unmodified _HPGTVFFSIF_ 0 0 0 ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5353393554688 3 384.53432 1150.58113 1.2909 0.00049638 0.336 0.0001292 1.6269 0.00062559 384.53440181138143 90.151 1.1727 83.975 83.598 84.771 -6.1757 190 68 4 0 0 0 0.40046 2 59805 59485;59805 21.59 3.2171 1 92254000 19979 15822 13723 13971 23545;23546 23546 0.011863333399332987 HPGTVFFSIF 10 Unmodified _HPGTVFFSIF_ 0 0 0 ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF ENST00000602586.1_1_1:16545087-16552470:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 384.53432 1150.58113 -0.3394 -0.00013051 -0.2537 -9.7557E-05 -0.5931 -0.00022807 384.53426343717354 61.196 0.1627 60.707 60.635 60.798 -0.48932 -0.012531 -0.00067929 NaN 16.566 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1102600 19980 15822 13723 13971 0.011863333399332987 HPGVAEVVF 9 Unmodified _HPGVAEVVF_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7548522949219 2 477.75581 953.497067 NaN NaN NaN NaN NaN NaN NaN 51.977 1 51.977 51.477 52.477 0 0 0 0 0.052454 1 28743 28743 56.541 20.497 1 19981 1774 13724 13972 23547 23547 0.018458022430536403 HPGVGVPTY 9 Unmodified _HPGVGVPTY_ 0 0 0 nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7395324707031 2 463.74016 925.465767 0.05636 2.6136E-05 -1.6876 -0.00078261 -1.6312 -0.00075647 463.739276550326 35.121 0.23139 35.121 34.977 35.209 0 19 11 2 0 0 0 0.12841 1 18584 18584 30.225 1.738 1 1640600 19982 6425 13725 13973 23548 23548 5.229208943546837E-05 HPGYFGKVGM 10 Oxidation (M) _HPGYFGKVGM(Oxidation (M))_ HPGYFGKVGM(1) HPGYFGKVGM(63) 0 0 1 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7650146484375 2 554.765852 1107.51715 0.66231 0.00036743 -0.85806 -0.00047602 -0.19575 -0.0001086 554.7655223880474 27.092 0.27298 27.06 26.882 27.155 -0.031706 24 15 3 0 0 0 0.041224 1 13908 13908 62.573 62.573 1 21185000 19983 7488 13726 13974 23549 23549 1287 -0.03230770088657664 HPGYFGKVGM 10 Oxidation (M) _HPGYFGKVGM(Oxidation (M))_ HPGYFGKVGM(1) HPGYFGKVGM(56) 0 0 1 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7662353515625 2 554.765852 1107.51715 0.39567 0.0002195 -0.18622 -0.00010331 0.20945 0.00011619 554.765847897208 26.921 0.33091 26.95 26.733 27.064 0.028664 24 14 2 0 0 0 0.0575 2 13922 13922;14026 56.177 44.537 1 13207000 19984 7488 13726 13974 23550;23551 23550 1287 -0.03230770088657664 HPGYFGKVGM 10 Oxidation (M) _HPGYFGKVGM(Oxidation (M))_ HPGYFGKVGM(1) HPGYFGKVGM(82) 0 0 1 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2678833007812 2 554.765852 1107.51715 0.60916 0.00033794 -0.02466 -1.3681E-05 0.5845 0.00032426 554.7658800878673 29.99 0.50573 26.537 26.275 26.78 -3.4526 55 24 3 0 0 0 0.013171 2 16788 16788;16902 81.89 58.742 1 75926000 19985 7488 13726 13974 23552;23553 23552 1287 -0.03230770088657664 HPGYFGKVGM 10 Unmodified _HPGYFGKVGM_ 0 0 0 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7674560546875 2 546.768394 1091.52224 NaN NaN NaN NaN NaN NaN NaN 36.474 1 36.496 35.996 36.996 0.021545 0 0 0 0.11618 1 19326 19326 49.933 25.912 1 19986 7488 13726 13975 23554 23554 -0.019864662260260957 HPGYFGKVGM 10 Unmodified _HPGYFGKVGM_ 0 0 0 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.768798828125 2 546.768394 1091.52224 1.0376 0.00056735 -1.345 -0.00073542 -0.30739 -0.00016807 546.7679047895195 41.035 0.54192 36.427 36.18 36.722 -4.6079 109 33 4 0 0 0 0.04925 3 24586 24457;24586;24716 58.679 33.28 1 142680000 19987 7488 13726 13975 23555;23556;23557 23556 -0.019864662260260957 HPGYFGKVGM 10 Unmodified _HPGYFGKVGM_ 0 0 0 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8479614257812 3 364.848022 1091.52224 1.785 0.00065124 -1.4018 -0.00051144 0.38318 0.0001398 364.84751604318427 40.992 0.50615 36.384 36.165 36.671 -4.6079 91 31 4 0 0 0 0.19662 2 24529 24529;24659 22.658 9.7855 1 43976000 19988 7488 13726 13975 23558;23559 23558 -0.019864662260260957 HPGYYLSFL 9 Unmodified _HPGYYLSFL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7;ENST00000494142.1_1_19:54677740-54682918:-|nuORF ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.18701171875 3 366.18692 1095.53893 NaN NaN NaN NaN NaN NaN NaN 21.257 1 21.257 20.757 21.757 0 0 0 0 0.84564 1 10743 10743 1.0715 0 1 19989 3859 13727 13976 23560 23560 -0.005016420684341938 HPHAVNEIAL 10 Unmodified _HPHAVNEIAL_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3 ENSG00000157827|ENST00000288670|FMNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.296630859375 2 550.795998 1099.57744 0.10899 6.0029E-05 -0.55265 -0.0003044 -0.44367 -0.00024437 550.7957241217989 35.562 0.29345 35.562 35.4 35.694 0 38 14 3 0 0 0 0.1028 2 18768 18768;18873 46.021 9.5148 1 30645000 19990 6543;6808 13728 13977 23561;23562 23561 0.031636635660561296 HPHAVNEIAL 10 Unmodified _HPHAVNEIAL_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3 ENSG00000157827|ENST00000288670|FMNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5327453613281 3 367.533091 1099.57744 -0.1913 -7.0307E-05 -0.084582 -3.1087E-05 -0.27588 -0.00010139 367.53303461778415 35.543 0.21334 35.543 35.46 35.674 0 15 10 2 0 0 0 0.13184 1 18816 18816 28.495 5.7195 1 4133200 19991 6543;6808 13728 13977 23563 23563 0.031636635660561296 HPHAVNEIAL 10 Unmodified _HPHAVNEIAL_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3 ENSG00000157827|ENST00000288670|FMNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5335388183594 3 367.533091 1099.57744 1.4856 0.000546 0.094339 3.4673E-05 1.5799 0.00058067 367.5330527645462 39.414 0.34473 34.963 34.811 35.156 -4.4509 30 20 2 0 0 0 0.1942 1 23358 23358 23.801 0 1 9582100 19992 6543;6808 13728 13977 23564 23564 0.031636635660561296 HPHAVNEIAL 10 Unmodified _HPHAVNEIAL_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3 ENSG00000157827|ENST00000288670|FMNL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.2161865234375 2 550.795998 1099.57744 0.82158 0.00045252 0.27636 0.00015222 1.0979 0.00060474 550.7959605727311 39.457 0.44426 35.006 34.75 35.194 -4.4509 51 26 2 0 0 0 0.22949 1 23247 23247 18.146 1.0335 1 55659000 19993 6543;6808 13728 13977 23565 23565 0.031636635660561296 HPHCTVAAL 9 Carbamidomethyl (C) _HPHC(Carbamidomethyl (C))TVAAL_ HPHC(1)TVAAL HPHC(74)TVAAL 0 1 0 ENSG00000179526|ENST00000398712|SHARPIN;nc|ENSG00000179526|Q9H0F6-2|SHARPIN;ENST00000525275.5_1_8:145154265-145154844:-|nuORF ENSG00000179526|ENST00000398712|SHARPIN ENSG00000179526|ENST00000398712|SHARPIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2509155273438 2 503.250369 1004.48618 -0.04212 -2.1197E-05 0.92702 0.00046652 0.8849 0.00044532 503.25123528325145 25.382 0.40979 22.499 22.338 22.748 -2.8831 46 22 3 0 0 0 0.012158 1 13934 13934 74.396 40.294 1 7921700 19994 8840 13729 13978 23566 23566 838 -0.015879234029057443 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(71) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7908935546875 2 545.789327 1089.5641 0.63187 0.00034487 -0.81977 -0.00044742 -0.1879 -0.00010255 545.7888257218077 43.025 0.29175 43.025 42.87 43.162 0 39 14 3 0 0 0 0.013472 2 23291 23291;23406 70.716 40.414 1 31283000 19995 16031 13730 13979 23567;23568 23567 1787 0.022900894624626744 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(56) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.195556640625 3 364.19531 1089.5641 0.46592 0.00016969 -0.66271 -0.00024136 -0.19679 -7.1668E-05 364.19529982116444 43.039 0.29374 43.039 42.889 43.183 0 33 14 3 0 0 0 0.028475 1 23315 23315 56.177 34.64 1 10407000 19996 16031 13730 13979 23569 23569 1787 0.022900894624626744 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(82) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.791748046875 2 545.789327 1089.5641 0.0018104 9.8809E-07 -0.12694 -6.9284E-05 -0.12513 -6.8295E-05 545.789487744442 43.206 0.32483 42.895 42.72 43.045 -0.31039 42 15 4 0 0 0 0.0094915 2 22926 22926;23027 81.864 49.559 1 47313000 19997 16031 13730 13979 23570;23571 23570 1787 0.022900894624626744 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(56) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.1954040527344 3 364.19531 1089.5641 0.163 5.9363E-05 -0.14712 -5.358E-05 0.015879 5.7831E-06 364.1952152343869 43.182 0.24777 42.872 42.759 43.007 -0.31039 22 11 3 0 0 0 0.028475 1 22946 22946 56.177 40.028 1 11473000 19998 16031 13730 13979 23572 23572 1787 0.022900894624626744 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(54) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.788818359375 2 545.789327 1089.5641 NaN NaN NaN NaN NaN NaN NaN 42.865 1 42.856 42.356 43.356 -0.0088196 0 0 0 0.060495 1 22962 22962 53.576 17.531 1 19999 16031 13730 13979 23573 23573 1787 0.022900894624626744 HPHDLVILM 9 Oxidation (M) _HPHDLVILM(Oxidation (M))_ HPHDLVILM(1) HPHDLVILM(56) 0 0 1 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.1975708007812 3 364.19531 1089.5641 2.1346 0.0007774 -0.88534 -0.00032244 1.2492 0.00045497 364.19557592260634 47.77 0.41713 42.536 42.294 42.711 -5.2339 69 24 4 0 0 0 0.028475 2 29629 29629;29763 56.177 23.391 1 22154000 20000 16031 13730 13979 23574;23575 23574 1787 0.022900894624626744 HPHDLVILM 9 Unmodified _HPHDLVILM_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7896728515625 2 537.791869 1073.56919 0.81207 0.00043672 -3.8801 -0.0020867 -3.068 -0.00165 537.7897623599082 61.801 0.39923 55.625 55.424 55.823 -6.1757 42 20 3 0 0 0 0.052168 1 39795 39795 44.407 22.66 1 25763000 20001 16031 13730 13980 23576 23576 0.03534393325094243 HPHDLVILM 9 Unmodified _HPHDLVILM_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8646545410156 3 358.863672 1073.56919 1.4585 0.0005234 0.048891 1.7545E-05 1.5074 0.00054095 358.86371171063524 91.245 0.41809 85.07 84.894 85.312 -6.1757 40 23 2 0 0 0 0.052168 1 60295 60295 32.786 20.254 1 6780300 20002 16031 13730 13980 23577 23577 0.03534393325094243 HPHEVMQRM 9 Unmodified _HPHEVMQRM_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8512573242188 3 388.851549 1163.53282 0.63958 0.0002487 0.50833 0.00019766 1.1479 0.00044637 388.8514698324612 16.974 0.078394 14.388 14.332 14.41 -2.5866 16 11 2 0 0 0 0.070838 1 8821 8821 36.506 26.962 1 1843000 20003 6520 13731 13981 23578 23578 -0.04240806843267819 HPHFLTHKL 9 Unmodified _HPHFLTHKL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2138061523438 3 377.213692 1128.61925 0.097487 3.6773E-05 1.4025 0.00052905 1.5 0.00056582 377.2137732117957 20.291 0.21813 20.301 20.189 20.407 0.010553 40 12 5 0 0 0 0.070838 1 10321 10321 29.841 21.095 1 2852200 20004 10015 13732 13982 23579 23579 0.060082640452719716 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2691040039062 2 526.269616 1050.52468 -0.18327 -9.6448E-05 -0.37551 -0.00019762 -0.55878 -0.00029407 526.2694052923349 28.785 0.36034 28.785 28.641 29.002 0 59 17 5 0 0 0 0.038285 1 14867 14867 50.855 14.728 1 148680000 20005 123 13733 13983 23580 23580 0.001437055032738499 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1818542480469 3 351.182169 1050.52468 -0.52783 -0.00018537 0.60959 0.00021408 0.081758 2.8712E-05 351.51662882224997 28.791 0.24127 28.791 28.662 28.903 0 26 11 3 0 0 0 0.16226 1 14871 14871 24.991 24.991 1 4002700 20006 123 13733 13983 23581 23581 0.001437055032738499 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2706909179688 2 526.269616 1050.52468 0.49838 0.00026228 -0.13116 -6.9026E-05 0.36722 0.00019326 526.2695090367546 28.719 0.33207 28.657 28.502 28.834 -0.062159 41 13 4 0 0 0 0.023164 1 14799 14799 60.39 16.531 1 76699000 20007 123 13733 13983 23582 23582 0.001437055032738499 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2706298828125 2 526.269616 1050.52468 0.10267 5.4032E-05 0.42462 0.00022346 0.52729 0.0002775 526.2697670567673 28.577 0.21346 28.607 28.467 28.681 0.029564 20 7 3 0 0 0 0.038285 1 14864 14864 50.855 14.811 1 6518800 20008 123 13733 13983 23583 23583 0.001437055032738499 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2695922851562 2 526.269616 1050.52468 0.87887 0.00046252 -0.4699 -0.00024729 0.40897 0.00021523 526.2692973911917 31.999 0.65833 28.303 28.035 28.694 -3.6958 139 37 5 0 0 0 0.038285 3 18177 18052;18177;18309 50.855 5.9675 1 984440000 20009 123 13733 13983 23584;23585;23586 23585 0.001437055032738499 HPHGLQVTY 9 Unmodified _HPHGLQVTY_ 0 0 0 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1;ENST00000481406.1_1_7:943651-944759:-|nuORF;ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 chr7:900613-904126|167|10.69|0.0|20.03|-|ENST00000649206|ADAP1,COX19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1828918457031 3 351.182169 1050.52468 1.5414 0.00054131 0.15699 5.5131E-05 1.6984 0.00059644 351.18220638550343 32.014 0.47298 28.318 28.105 28.578 -3.6958 72 26 4 0 0 0 0.013472 2 18104 18104;18227 53.833 18.901 1 87626000 20010 123 13733 13983 23587;23588 23587 0.001437055032738499 HPHGSYSRL 9 Unmodified _HPHGSYSRL_ 0 0 0 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 ENSG00000205220|ENST00000358514|PSMB10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8462219238281 3 351.845669 1052.51518 0.86847 0.00030557 -0.40382 -0.00014208 0.46465 0.00016349 351.8459062789497 14.925 0.17044 12.397 12.322 12.493 -2.5273 59 31 2 0 0 0 0.34134 1 7592 7592 19.626 6.7534 1 3403600 20011 10353 13734 13984 23589 23589 -0.008980627822666065 HPHHLCSVEPA 11 Unmodified _HPHHLCSVEPA_ 0 0 0 ENST00000339772.9_1_11:134212821-134214301:+|nuORF ENST00000339772.9_1_11:134212821-134214301:+|nuORF ENST00000339772.9_1_11:134212821-134214301:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8643798828125 3 409.529352 1225.56623 -0.11713 -4.7968E-05 1.3216 0.00054124 1.2045 0.00049328 409.52983587751856 19.967 0.19366 19.974 19.894 20.087 0.0078506 15 9 2 0 0 0 0.73115 1 10166 10166 0.45452 0.046251 1 414680 20012 11954 13735 13985 23590 23590 -0.03753481799685687 HPHIIAIHEVF 11 Unmodified _HPHIIAIHEVF_ 0 0 0 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.244140625 3 438.24354 1311.70879 0.58683 0.00025718 0.15162 6.6446E-05 0.73845 0.00032362 438.24358686197513 47.65 0.30949 47.297 47.165 47.474 -0.3526 30 14 3 0 0 0 0.013383 1 25529 25529 57.249 52.843 1 10560000 20013 7016 13736 13986 23591 23591 0.06540473933932844 HPHIIAIHEVF 11 Unmodified _HPHIIAIHEVF_ 0 0 0 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.5785827636719 3 438.24354 1311.70879 0.96041 0.00042089 0.66201 0.00029012 1.6224 0.00071102 438.5781117604507 47.41 0.32334 47.371 47.216 47.54 -0.038643 43 14 4 0 0 0 0.12176 1 25561 25561 37.075 32.958 1 11784000 20014 7016 13736 13986 23592 23592 0.06540473933932844 HPHIIAIHEVF 11 Unmodified _HPHIIAIHEVF_ 0 0 0 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 ENSG00000163545|ENST00000367157|NUAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2440490722656 3 438.24354 1311.70879 1.1677 0.00051174 -0.3841 -0.00016833 0.78361 0.00034341 438.2434551998299 92.174 0.26191 85.999 85.853 86.115 -6.1757 39 15 3 0 0 0 0.016068 1 60914 60914 47.732 41.498 1 59432000 20015 7016 13736 13986 23593 23593 0.06540473933932844 HPHIITLIDSY 11 Unmodified _HPHIITLIDSY_ 0 0 0 nc|ENSG00000156873|P15735-2|PHKG2;ENSG00000156873|ENST00000563588|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.8514404296875 2 654.85097 1307.68739 0.25433 0.00016655 0.11111 7.2762E-05 0.36544 0.00023931 654.8512708552553 58.364 0.20428 57.873 57.759 57.963 -0.49079 14 9 2 0 0 0 0.0097967 1 31729 31729 68.081 54.175 1 1985300 20016 6486 13737 13987 23594 23594 0.04585044114628545 HPHIITLIDSY 11 Unmodified _HPHIITLIDSY_ 0 0 0 nc|ENSG00000156873|P15735-2|PHKG2;ENSG00000156873|ENST00000563588|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8506469726562 2 654.85097 1307.68739 1.1646 0.00076262 -1.9878 -0.0013017 -0.82318 -0.00053906 654.8499992407934 57.987 0.19464 57.921 57.795 57.99 -0.066036 15 9 2 0 0 0 0.043669 1 31579 31579 52.268 30.731 1 1766500 20017 6486 13737 13987 23595 23595 0.04585044114628545 HPHIITLIDSY 11 Unmodified _HPHIITLIDSY_ 0 0 0 nc|ENSG00000156873|P15735-2|PHKG2;ENSG00000156873|ENST00000563588|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 nc|ENSG00000156873|P15735-2|PHKG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8485107421875 2 654.85097 1307.68739 1.2766 0.00083601 -0.60954 -0.00039916 0.6671 0.00043685 654.8505687405649 95.672 0.17007 89.497 89.431 89.601 -6.1757 19 10 2 0 0 0 4.8608E-11 1 63364 63364 123.45 86.944 1 21132000 20018 6486 13737 13987 23596 23596 0.04585044114628545 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8568725585938 2 675.856252 1349.69795 0.2486 0.00016802 -0.2983 -0.00020161 -0.049701 -3.3591E-05 675.8556639189162 59.773 0.10307 59.773 59.693 59.796 0 7 4 2 0 0 0 0.12819 1 33323 33323 41.84 18.05 1 1307700 20019 5814 13738 13988 23597 23597 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.9061584472656 3 450.906594 1349.69795 -0.016993 -7.6623E-06 -0.24266 -0.00010942 -0.25965 -0.00011708 450.9063998108704 60.243 0.27561 59.752 59.63 59.906 -0.49079 21 13 2 0 0 0 0.06459 2 32800 32752;32800 47.732 40.255 1 3618500 20020 5814 13738 13988 23598;23599 23599 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.8567504882812 2 675.856252 1349.69795 0.037575 2.5396E-05 -0.076314 -5.1578E-05 -0.038739 -2.6182E-05 675.8559076616557 60.25 0.40203 59.759 59.586 59.988 -0.49079 46 19 3 0 0 0 0.016317 2 32887 32783;32887 78.149 64.243 1 13950000 20021 5814 13738 13988 23600;23601 23601 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.857421875 2 675.856252 1349.69795 0.52439 0.00035441 0.84741 0.00057273 1.3718 0.00092714 675.8565996692905 59.84 0.28394 59.787 59.634 59.918 -0.053062 21 13 2 0 0 0 0.010729 1 32611 32611 85.272 54.004 1 8522000 20022 5814 13738 13988 23602 23602 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9067993164062 3 450.906594 1349.69795 NaN NaN NaN NaN NaN NaN NaN 59.858 1 59.805 59.305 60.305 -0.053062 0 0 0 0.40236 1 32637 32637 28.234 25.602 1 20023 5814 13738 13988 23603 23603 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.3577880859375 2 675.856252 1349.69795 1.3845 0.0009357 -0.73441 -0.00049636 0.65005 0.00043934 675.8555748712749 97.581 0.19646 91.405 91.313 91.509 -6.1757 29 10 4 0 0 0 0.010729 1 64638 64638 96.285 56.335 1 121510000 20024 5814 13738 13988 23604 23604 0.03709026769024604 HPHIVELLETY 11 Unmodified _HPHIVELLETY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.9071350097656 3 450.906594 1349.69795 1.5502 0.00069901 -0.5705 -0.00025724 0.97974 0.00044177 450.9062154652373 97.587 0.14391 91.411 91.332 91.476 -6.1757 12 7 2 0 0 0 0.016317 1 64658 64658 61.09 47.571 1 60306000 20025 5814 13738 13988 23605 23605 0.03709026769024604 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.879150390625 3 379.879433 1136.61647 0.23104 8.7767E-05 0.074356 2.8246E-05 0.3054 0.00011601 379.8795316658143 31.366 0.1697 31.263 31.188 31.357 -0.10269 10 6 2 0 0 0 0.58466 1 16328 16328 2.9952 0.90923 1 2008800 20026 7044;13980 13739 13989 23606 23606 0.05362672596129414 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2144165039062 3 379.879433 1136.61647 -0.19154 -7.2762E-05 0.10785 4.0971E-05 -0.083687 -3.1791E-05 379.87933549377993 31.204 0.39627 31.234 31.015 31.411 0.030106 28 16 3 0 0 0 0.54444 1 16305 16305 8.7454 4.4162 1 5128000 20027 7044;13980 13739 13989 23607 23607 0.05362672596129414 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8162841796875 2 569.315512 1136.61647 0.95128 0.00054158 -0.38843 -0.00022114 0.56285 0.00032044 569.3156429311165 35.147 0.36714 31.052 30.856 31.223 -4.0951 48 21 3 0 0 0 0.070838 2 20421 20289;20421 39.957 12.045 1 16475000 20028 7044;13980 13739 13989 23608;23609 23609 0.05362672596129414 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8797302246094 3 379.879433 1136.61647 1.2878 0.0004892 -0.11879 -4.5125E-05 1.169 0.00044407 379.87939978856565 35.166 0.63338 31.071 30.7 31.333 -4.0951 107 37 4 0 0 0 0.39863 1 20314 20314 12.241 2.0901 1 100740000 20029 7044;13980 13739 13989 23610 23610 0.05362672596129414 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8796081542969 3 379.879433 1136.61647 1.4507 0.00055109 -0.55463 -0.00021069 0.89606 0.0003404 379.87920938623824 83.417 1.0618 77.241 76.715 77.777 -6.1757 126 56 3 0 0 0 0.41742 1 54709 54709 7.609 0 1 24661000 20030 7044;13980 13739 13989 23611 23611 0.05362672596129414 HPHKIIVMY 9 Unmodified _HPHKIIVMY_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.879433 1136.61647 -0.19154 -7.2762E-05 0.10785 4.0971E-05 -0.083687 -3.1791E-05 379.87933549377993 31.204 0.39627 31.234 31.015 31.411 0.030106 0.044689 0.00016902 NaN 12.241 28 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5128000 20031 7044;13980 13739 13989 0.05362672596129414 HPHKIIVMY 9 Oxidation (M) _HPHKIIVM(Oxidation (M))Y_ HPHKIIVM(1)Y HPHKIIVM(55)Y 0 0 1 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF;ENST00000473872.5_1_1:1328774-1333626:-|nuORF;ENST00000482621.5_1_1:1328164-1330914:-|nuORF;ENST00000478454.5_1_3:156869964-156874795:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3101806640625 2 577.312969 1152.61138 0.46367 0.00026768 -0.49277 -0.00028448 -0.029096 -1.6798E-05 577.3123835075476 27.714 0.38651 24.678 24.435 24.822 -3.0365 32 19 2 0 0 0 0.031062 1 15317 15317 54.774 27.89 1 18865000 20032 7044;13980 13739 13990 23612 23612 1208 0.04118368733497846 HPHKYLLHY 9 Unmodified _HPHKYLLHY_ 0 0 0 nc|ENSG00000262919|Q8N1B3-2|CCNQ;ENSG00000262919|ENST00000576892|CCNQ;ENST00000435741.1_1_Y:28772724-28773147:-|nuORF;ENST00000428076.1_1_13:19956755-19957193:+|nuORF nc|ENSG00000262919|Q8N1B3-2|CCNQ nc|ENSG00000262919|Q8N1B3-2|CCNQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2173767089844 3 403.217214 1206.62981 0.38246 0.00015421 0.59507 0.00023994 0.97753 0.00039416 403.2173928631103 24.492 0.38669 21.665 21.486 21.872 -2.8273 53 21 3 0 0 0 0.03327 2 13297 13297;13407 47.749 47.749 1 17050000 20033 10850 13740 13991 23613;23614 23613 0.03476246699710828 HPHLRQLD 8 Unmodified _HPHLRQLD_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2750549316406 2 508.275232 1014.53591 NaN NaN NaN NaN NaN NaN NaN 19.982 1 19.989 19.489 20.489 0.0078487 0 0 0 0.97444 1 10179 10179 2.8892 0 1 20034 8106 13741 13992 23615 23615 0.029225275973999487 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5329284667969 3 391.533091 1171.57744 -0.53761 -0.00021049 0.11838 4.635E-05 -0.41922 -0.00016414 391.5331114584341 18.908 0.17693 18.908 18.806 18.983 0 27 14 2 0 0 0 0.35903 1 9420 9420 20.581 12.972 1 4697700 20035 10387 13742 13993 23616 23616 -0.0014833643390375073 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5336608886719 3 391.533091 1171.57744 -0.53835 -0.00021078 0.79834 0.00031258 0.25999 0.0001018 391.5333451483329 18.76 0.17003 18.783 18.704 18.874 0.023106 81 23 4 0 0 0 0.68719 1 9400 9400 2.086 0.89267 1 6898200 20036 10387 13742 13993 23617 23617 -0.0014833643390375073 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.532958984375 3 391.533091 1171.57744 -0.016807 -6.5806E-06 -0.96231 -0.00037677 -0.97911 -0.00038335 391.5326984658203 18.823 0.13648 18.829 18.747 18.883 0.0060463 11 6 2 0 0 0 0.33553 1 9555 9555 33.445 24.699 1 3892300 20037 10387 13742 13993 23618 23618 -0.0014833643390375073 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5335998535156 3 391.533091 1171.57744 1.4385 0.00056322 -0.5934 -0.00023233 0.8451 0.00033089 391.5329390679839 20.683 0.36508 17.99 17.82 18.186 -2.693 78 23 4 0 0 0 0.24625 2 10984 10984;11096 26.021 20.289 1 66495000 20038 10387 13742 13993 23619;23620 23619 -0.0014833643390375073 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7958374023438 2 586.795998 1171.57744 1.086 0.00063723 -2.872 -0.0016853 -1.7861 -0.0010481 586.7941246744807 20.672 0.19505 17.979 17.901 18.096 -2.693 21 13 2 0 0 0 0.052718 2 11001 10989;11001 57.249 31.834 1 3637400 20039 10387 13742 13993 23621;23622 23622 -0.0014833643390375073 HPHLSKGYAY 10 Unmodified _HPHLSKGYAY_ 0 0 0 ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1 ENST00000570051.5_1_16:2312273-2318093:-|nuORF ENST00000570051.5_1_16:2312273-2318093:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.533091 1171.57744 -0.53835 -0.00021078 0.79834 0.00031258 0.25999 0.0001018 391.5333451483329 18.76 0.17003 18.783 18.704 18.874 0.023106 -0.056473 0.00052451 NaN 33.445 81 23 4 NaN NaN NaN NaN 0 NaN NaN 0 6898200 20040 10387 13742 13993 -0.0014833643390375073 HPHLVAEAF 9 Unmodified _HPHLVAEAF_ 0 0 0 ENSG00000144228|ENST00000280098|SPOPL;ENST00000420679.1_1_2:139308594-139326647:+|nuORF ENSG00000144228|ENST00000280098|SPOPL ENSG00000144228|ENST00000280098|SPOPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7662963867188 2 510.766709 1019.51886 0.42515 0.00021715 -1.6222 -0.00082856 -1.197 -0.00061141 510.7657609388314 38.175 0.23933 38.175 38.049 38.288 0 31 13 3 0 0 0 0.023761 1 20353 20353 59.795 8.9402 1 25389000 20041 5591 13743 13994 23623 23623 0.009886069915978624 HPHLVAEAF 9 Unmodified _HPHLVAEAF_ 0 0 0 ENSG00000144228|ENST00000280098|SPOPL;ENST00000420679.1_1_2:139308594-139326647:+|nuORF ENSG00000144228|ENST00000280098|SPOPL ENSG00000144228|ENST00000280098|SPOPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7676696777344 2 510.766709 1019.51886 -0.18644 -9.5226E-05 0.52028 0.00026574 0.33384 0.00017051 510.7669006184978 38.481 0.27715 38.194 38.026 38.303 -0.28687 32 12 3 0 0 0 0.023761 2 20213 20213;20318 59.795 19.347 1 10381000 20042 5591 13743 13994 23624;23625 23624 0.009886069915978624 HPHLVAEAF 9 Unmodified _HPHLVAEAF_ 0 0 0 ENSG00000144228|ENST00000280098|SPOPL;ENST00000420679.1_1_2:139308594-139326647:+|nuORF ENSG00000144228|ENST00000280098|SPOPL ENSG00000144228|ENST00000280098|SPOPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7677001953125 2 510.766709 1019.51886 0.51606 0.00026358 0.017109 8.7389E-06 0.53317 0.00027232 510.76685633044417 43.088 0.40978 38.323 38.083 38.493 -4.7648 66 26 3 0 0 0 0.023761 2 26016 26016;26147 59.795 8.9402 1 61250000 20043 5591 13743 13994 23626;23627 23626 0.009886069915978624 HPHLVAEAY 9 Unmodified _HPHLVAEAY_ 0 0 0 ENSG00000121067|ENST00000504102|SPOP;ENST00000572686.1_1_17:47677742-47677928:-|nuORF;ENST00000507551.1_1_17:47677742-47679119:-|nuORF ENSG00000121067|ENST00000504102|SPOP ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.76416015625 2 518.764166 1035.51378 -0.45259 -0.00023479 0.5464 0.00028345 0.093816 4.8668E-05 518.7643372624202 27.824 0.30531 27.824 27.679 27.985 0 49 14 5 0 0 0 0.023761 1 14321 14321 59.795 23.751 1 21649000 20044 3565 13744 13995 23628 23628 -0.002556968710223373 HPHLVAEAY 9 Unmodified _HPHLVAEAY_ 0 0 0 ENSG00000121067|ENST00000504102|SPOP;ENST00000572686.1_1_17:47677742-47677928:-|nuORF;ENST00000507551.1_1_17:47677742-47679119:-|nuORF ENSG00000121067|ENST00000504102|SPOP ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.764892578125 2 518.764166 1035.51378 0.63547 0.00032966 -0.34873 -0.00018091 0.28674 0.00014875 518.764036859516 31.551 0.31423 27.855 27.685 28 -3.6958 29 16 2 0 0 0 0.016494 2 17824 17824;17948 67.035 30.991 1 84620000 20045 3565 13744 13995 23629;23630 23629 -0.002556968710223373 HPHNLSTHF 9 Unmodified _HPHNLSTHF_ 0 0 0 REV__ENSG00000131697|ENST00000378156|NPHP4 REV__ENSG00000131697|ENST00000378156|NPHP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8466491699219 3 363.845669 1088.51518 0.82412 0.00029985 -0.1749 -6.3636E-05 0.64922 0.00023621 364.17966960009386 15.861 0.19163 13.304 13.191 13.382 -2.557 87 44 3 0 0 0 0.30562 1 8170 8170 11.495 0 1 4976800 + 20046 19805 13745 13996 23631 23631 -0.025540627822465467 HPHPEDIKF 9 Unmodified _HPHPEDIKF_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8575439453125 3 373.857574 1118.55089 -0.78622 -0.00029394 1.0655 0.00039835 0.2793 0.00010442 373.8578327196677 28.264 0.25832 28.264 28.128 28.387 0 36 12 5 0 0 0 0.094149 1 14569 14569 32.037 23.882 1 11518000 20047 2328 13746 13997 23632 23632 -0.003640253252342518 HPHPEDIKF 9 Unmodified _HPHPEDIKF_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8580932617188 3 373.857574 1118.55089 0.55391 0.00020708 0.17334 6.4803E-05 0.72724 0.00027189 373.8573954808058 28.186 0.22925 28.14 28.013 28.242 -0.046408 13 8 2 0 0 0 0.03568 1 14527 14527 47.594 30.152 1 7086700 20048 2328 13746 13997 23633 23633 -0.003640253252342518 HPHPEDIKF 9 Unmodified _HPHPEDIKF_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.85791015625 3 373.857574 1118.55089 1.3956 0.00052176 -0.023511 -8.7897E-06 1.3721 0.00051297 373.8575245954481 31.068 0.32168 27.392 27.253 27.575 -3.6764 30 15 3 0 0 0 0.0082661 2 17549 17549;17673 107.1 65.144 1 111180000 20049 2328 13746 13997 23634;23635 23634 -0.003640253252342518 HPHPGPNYPSF 11 Unmodified _HPHPGPNYPSF_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.291259765625 2 625.291079 1248.56761 -0.44302 -0.00027702 1.141 0.00071346 0.69799 0.00043645 625.2917839527157 35.012 0.31425 34.789 34.623 34.938 -0.2224 46 13 4 0 0 0 0.018255 2 18275 18275;18376 55.503 37.13 1 10465000 20050 4862 13747 13998 23636;23637 23636 -0.046735244392948516 HPHPGPNYPSF 11 Unmodified _HPHPGPNYPSF_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.291015625 2 625.291079 1248.56761 0.19293 0.00012064 0.21107 0.00013198 0.40399 0.00025261 625.2910323251145 38.517 0.40276 34.148 33.916 34.319 -4.3689 64 25 4 0 0 0 1.2727E-08 2 22758 22626;22758 128.57 92.067 1 45465000 20051 4862 13747 13998 23638;23639 23639 -0.046735244392948516 HPHPGPNYPSF 11 Unmodified _HPHPGPNYPSF_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.1966552734375 3 417.196478 1248.56761 0.65401 0.00027285 0.7882 0.00032883 1.4422 0.00060168 417.5308719098317 38.532 0.23145 34.163 34.058 34.29 -4.3689 33 14 3 0 0 0 0.62014 1 22773 22773 10.315 4.5318 1 10620000 20052 4862 13747 13998 23640 23640 -0.046735244392948516 HPHPLITVL 9 Unmodified _HPHPLITVL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD;ENST00000604103.1_1_9:20740247-20764921:+|nuORF ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8084106445312 2 513.808377 1025.6022 0.32863 0.00016885 -0.92297 -0.00047423 -0.59434 -0.00030538 513.8078670467789 51.089 0.30513 51.035 50.882 51.187 -0.053871 28 14 3 0 0 0 0.058206 1 27629 27629 42.968 12.743 1 3206800 20053 9652 13748 13999 23641 23641 0.0904234343945518 HPHPLITVL 9 Unmodified _HPHPLITVL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD;ENST00000604103.1_1_9:20740247-20764921:+|nuORF ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8085327148438 2 513.808377 1025.6022 1.0818 0.00055585 0.54589 0.00028048 1.6277 0.00083634 513.8086534310729 89.097 0.51571 82.922 82.685 83.201 -6.1757 40 28 2 0 0 0 0.040472 2 58746 58746;58888 49.669 9.2203 1 9927800 20054 9652 13748 13999 23642;23643 23642 0.0904234343945518 HPHPLITVL 9 Unmodified _HPHPLITVL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD;ENST00000604103.1_1_9:20740247-20764921:+|nuORF ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.808377 1025.6022 -0.26914 -0.00013829 -0.23109 -0.00011874 -0.50024 -0.00025703 513.8081020171687 51.469 0.18592 51.055 51.009 51.194 -0.41351 0.010088 0.00037709 NaN 42.968 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3451700 20055 9652 13748 13999 0.0904234343945518 HPHPSILPI 9 Unmodified _HPHPSILPI_ 0 0 0 ENST00000430373.1_1_1:112290019-112290364:+|nuORF ENST00000430373.1_1_1:112290019-112290364:+|nuORF ENST00000430373.1_1_1:112290019-112290364:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7917175292969 2 505.792727 1009.5709 NaN NaN NaN NaN NaN NaN NaN 78.54 1 78.54 78.04 79.04 0 0 0 0 0.84564 1 43644 43644 2.0598 0.21551 1 20056 13244 13749 14000 23644 23644 0.06649770405374511 HPHPVVPKM 9 Oxidation (M) _HPHPVVPKM(Oxidation (M))_ HPHPVVPKM(1) HPHPVVPKM(54) 0 0 1 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1925048828125 3 353.1919 1056.55387 0.86339 0.00030494 0.65309 0.00023067 1.5165 0.00053561 353.1921676181981 16.205 0.28309 13.648 13.519 13.802 -2.557 112 42 3 0 0 0 0.032796 1 8347 8347 53.833 41.592 1 12045000 20057 16379 13750 14001 23645 23645 1817 0.02785526527895854 HPHQGPRLL 9 Unmodified _HPHQGPRLL_ 0 0 0 ENST00000392341.5_1_17:80197025-80197367:+|nuORF ENST00000392341.5_1_17:80197025-80197367:+|nuORF ENST00000392341.5_1_17:80197025-80197367:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.201904296875 3 352.201675 1053.5832 NaN NaN NaN NaN NaN NaN NaN 25.737 1 22.786 22.286 23.286 -2.9511 0 0 0 0.43505 1 14111 14111 12.241 0 1 20058 12670 13751 14002 23646 23646 0.05854806868410378 HPHQLKLSLL 10 Unmodified _HPHQLKLSLL_ 0 0 0 REV__ENST00000477496.5_1_3:123881713-123881914:+|nuORF REV__ENST00000477496.5_1_3:123881713-123881914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2424621582031 3 395.908269 1184.70298 -0.069013 -2.7323E-05 -2.3887 -0.0009457 -2.4577 -0.00097303 395.90707069450747 17.937 0.07478 17.944 17.91 17.985 0.0060463 8 5 2 0 0 0 0.68844 1 9077 9077 4.1895 1.1943 1 683150 + 20059 27614 13752 14003 23647 23647 0.1180137542232842 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3076171875 2 597.306729 1192.59891 -0.51687 -0.00030873 1.1655 0.00069616 0.64863 0.00038743 597.307237360053 30.761 0.26475 30.761 30.607 30.872 0 40 12 4 0 0 0 0.067957 1 15963 15963 53.833 9.9745 1 16438000 20060 3655 13753 14004 23648 23648 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5400390625 3 398.540245 1192.59891 -0.50499 -0.00020126 1.1989 0.00047781 0.69392 0.00027655 398.5401698757586 30.782 0.54769 30.782 30.484 31.031 0 49 26 4 0 0 0 0.13391 1 15988 15988 35.612 23.385 1 6665900 20061 3655 13753 14004 23649 23649 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3079833984375 2 597.306729 1192.59891 0.52477 0.00031345 0.30159 0.00018014 0.82637 0.00049359 597.3068388544069 30.721 0.3962 30.618 30.419 30.815 -0.10269 52 15 4 0 0 0 0.024115 2 15908 15908;16014 71.922 28.064 1 40668000 20062 3655 13753 14004 23650;23651 23650 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5399780273438 3 398.540245 1192.59891 0.49162 0.00019593 0.58205 0.00023197 1.0737 0.0004279 398.5399925264455 30.745 0.43048 30.643 30.337 30.767 -0.10269 35 16 4 0 0 0 0.095098 1 15934 15934 47.732 20.509 1 8047500 20063 3655 13753 14004 23652 23652 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.306396484375 2 597.306729 1192.59891 -0.23926 -0.00014291 1.6959 0.001013 1.4566 0.00087005 597.3077034456275 30.509 0.23606 30.539 30.434 30.67 0.030104 17 10 2 0 0 0 0.14923 1 15954 15954 39.95 10.868 1 1619100 20064 3655 13753 14004 23653 23653 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3076171875 2 597.306729 1192.59891 0.80577 0.00048129 0.14895 8.8966E-05 0.95471 0.00057026 597.3067326193338 34.076 0.60884 30.091 29.731 30.34 -3.9853 117 33 5 0 0 0 0.0058182 3 19422 19422;19554;19679 96.111 28.03 1 239050000 20065 3655 13753 14004 23654;23655;23656 23654 0.010310485948139103 HPHQNLIATY 10 Unmodified _HPHQNLIATY_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5408935546875 3 398.540245 1192.59891 1.416 0.00056433 0.31725 0.00012644 1.7332 0.00069077 398.54024409487613 34.073 0.57303 30.088 29.714 30.287 -3.9853 99 31 4 0 0 0 0.067957 2 19581 19461;19581 46.022 20.002 1 86247000 20066 3655 13753 14004 23657;23658 23658 0.010310485948139103 HPHQPPPA 8 Unmodified _HPHQPPPA_ 0 0 0 REV__ENST00000519649.5_3_10:102732683-102732749:+|nuORF REV__ENST00000519649.5_3_10:102732683-102732749:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7257995605469 2 440.724844 879.435135 0.94321 0.0004157 0.9257 0.00040798 1.8689 0.00082368 440.7249513608127 22.123 0.1685 19.388 19.32 19.489 -2.7348 10 8 2 0 0 0 0.74163 1 11911 11911 13.508 0 1 892020 + 20067 28263 13754 14005 23659 23659 -0.009405043854371797 HPHRGFETVSY 11 Unmodified _HPHRGFETVSY_ 0 0 0 ENSG00000087842|ENST00000380420|PIR;ENST00000476381.5_1_X:15447791-15497935:-|nuORF ENSG00000087842|ENST00000380420|PIR ENSG00000087842|ENST00000380420|PIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.8831481933594 3 443.882671 1328.62618 -0.14184 -6.2958E-05 0.83081 0.00036878 0.68898 0.00030583 444.21748431733363 24.436 0.31771 24.436 24.293 24.61 0 38 16 4 0 0 0 0.39452 1 12505 12505 21.799 12.035 1 3452100 20068 1475 13755 14006 23660 23660 -0.024984678648024783 HPHRGFETVSY 11 Unmodified _HPHRGFETVSY_ 0 0 0 ENSG00000087842|ENST00000380420|PIR;ENST00000476381.5_1_X:15447791-15497935:-|nuORF ENSG00000087842|ENST00000380420|PIR ENSG00000087842|ENST00000380420|PIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.8826293945312 3 443.882671 1328.62618 0.10064 4.4674E-05 0.17115 7.5968E-05 0.27179 0.00012064 444.21724193784934 24.663 0.27552 24.662 24.504 24.779 -0.0016766 22 10 3 0 0 0 0.57006 1 12632 12632 12.856 6.6641 1 10803000 20069 1475 13755 14006 23661 23661 -0.024984678648024783 HPHRGFETVSY 11 Unmodified _HPHRGFETVSY_ 0 0 0 ENSG00000087842|ENST00000380420|PIR;ENST00000476381.5_1_X:15447791-15497935:-|nuORF ENSG00000087842|ENST00000380420|PIR ENSG00000087842|ENST00000380420|PIR MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.8830871582031 3 443.882671 1328.62618 0.58721 0.00026065 -0.16437 -7.2959E-05 0.42284 0.00018769 443.8826207615073 27.521 0.5538 24.484 24.18 24.734 -3.0365 65 27 4 0 0 0 0.23097 2 15211 15211;15327 30.431 17.576 1 62738000 20070 1475 13755 14006 23662;23663 23662 -0.024984678648024783 HPHRHQHFPTS 11 Unmodified _HPHRHQHFPTS_ 0 0 0 REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF REV__ENST00000354725.7_1_7:127292278-127292377:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2286071777344 3 460.893793 1379.65955 0.12818 5.9076E-05 -0.39859 -0.00018371 -0.27041 -0.00012463 460.8938219657929 29.837 0.26146 29.868 29.734 29.995 0.030104 23 9 4 0 0 0 0.65846 1 15592 15592 4.1166 0 1 3033900 + 20071 25795 13756 14007 23664 23664 -0.015094213022621261 HPHRRRGP 8 Unmodified _HPHRRRGP_ 0 0 0 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 REV__nc|ENSG00000230487|Q96PY0|PSMG3-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1013.567443847656 1 1012.56599 1011.55871 0.47957 0.0004856 -0.53428 -0.000541 -0.054711 -5.5399E-05 1013.5663837937174 34.079 0.62834 34.108 33.72 34.349 0.028931 44 28 2 0 0 0 0.80975 1 17937 17937 0.79363 0 1 1749100 + 20072 27041 13757 14008 23665 23665 0.05339591505560293 HPHSGSGRSVL 11 Unmodified _HPHSGSGRSVL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5323791503906 3 378.531861 1132.57375 0.64891 0.00024563 1.0034 0.00037982 1.6523 0.00062545 378.53231176931774 14.603 0.088292 12.1 12.075 12.163 -2.5029 28 16 2 0 0 0 0.39848 1 7432 7432 17.572 6.7724 1 2316900 20073 10194 13758 14009 23666 23666 0.012769937922485042 HPHTECHSYVF 11 Carbamidomethyl (C) _HPHTEC(Carbamidomethyl (C))HSYVF_ HPHTEC(1)HSYVF HPHTEC(46)HSYVF 0 1 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.8710327148438 3 471.871666 1412.59317 0.37096 0.00017505 0.5702 0.00026906 0.94116 0.00044411 471.871629677251 27.732 0.75425 24.695 24.454 25.209 -3.0365 109 39 5 0 0 0 0.072475 1 15301 15301 46.022 39.399 1 126400000 20074 8967 13759 14010 23667 23667 844 -0.09662417979211568 HPHTECHSYVF 11 Carbamidomethyl (C) _HPHTEC(Carbamidomethyl (C))HSYVF_ HPHTEC(1)HSYVF HPHTEC(52)HSYVF 0 1 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.3038330078125 2 707.303861 1412.59317 0.11758 8.3166E-05 0.10746 7.601E-05 0.22505 0.00015918 707.8056916240693 27.768 0.26249 24.732 24.559 24.822 -3.0365 20 13 2 0 0 0 0.046614 1 15470 15470 51.63 44.528 1 6820400 20075 8967 13759 14010 23668 23668 844 -0.09662417979211568 HPHWEEDG 8 Unmodified _HPHWEEDG_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1006.898193359375 1 1006.40133 1005.39406 0.51433 0.00051763 0.97913 0.0009854 1.4935 0.001503 1006.4042866231721 29.295 0.089405 29.233 29.164 29.253 -0.062159 5 3 2 0 0 0 8.7369 1 15126 15126 2.8892 0 1 3003200 20076 448 13760 14011 23669 23669 -0.1084231021557116 HPHYSREEL 9 Unmodified _HPHYSREEL_ 0 0 0 nc|ENSG00000154642|Q9NYK6-3|EURL;ENSG00000154642|ENST00000284881|C21orf91 nc|ENSG00000154642|Q9NYK6-3|EURL nc|ENSG00000154642|Q9NYK6-3|EURL MSMS AL20221201_MKP_PDAC_01 4 389.8564453125 3 389.856233 1166.54687 NaN NaN NaN NaN NaN NaN NaN 17.537 1 14.951 14.451 15.451 -2.5866 0 0 0 0.6557 1 9179 9179 15.248 5.8654 1 20077 6338 13761 14012 23670 23670 -0.029741148189714295 HPIASFQNF 9 Unmodified _HPIASFQNF_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7640991210938 2 530.764166 1059.51378 0.80234 0.00042585 -0.66932 -0.00035525 0.13303 7.0605E-05 530.763918304291 50.515 0.24635 50.101 50.012 50.258 -0.41351 20 11 2 0 0 0 0.0090851 1 27224 27224 85.357 45.399 1 3286400 20078 10661 13762 14013 23671 23671 -0.01359696871008964 HPIASFQNF 9 Unmodified _HPIASFQNF_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.764892578125 2 530.764166 1059.51378 1.4472 0.00076812 -0.54182 -0.00028758 0.90539 0.00048055 530.7639406880999 50.21 0.24392 50.161 50.006 50.25 -0.048824 25 11 3 0 0 0 0.013472 1 27122 27122 70.716 47.567 1 2362000 20079 10661 13762 14013 23672 23672 -0.01359696871008964 HPIDDLQSAY 10 Unmodified _HPIDDLQSAY_ 0 0 0 nc|ENSG00000068885|Q9P2H3-3|IFT80;ENSG00000213186|ENST00000309784|TRIM59 nc|ENSG00000068885|Q9P2H3-3|IFT80 nc|ENSG00000068885|Q9P2H3-3|IFT80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7744750976562 2 579.774928 1157.5353 0.50872 0.00029494 -0.029612 -1.7169E-05 0.4791 0.00027777 579.7747503945008 38.431 0.24023 38.431 38.379 38.62 0 21 13 2 0 0 0 0.074936 1 20544 20544 52.268 25.385 1 5054700 20080 16044 13763 14014 23673 23673 -0.037163566329581954 HPIDRSVDF 9 Unmodified _HPIDRSVDF_ 0 0 0 ENSG00000242114|ENST00000266263|MTFP1;ENST00000412752.5_1_22:30822770-30824518:+|nuORF ENSG00000242114|ENST00000266263|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2719116210938 2 543.272355 1084.53016 0.96215 0.00052271 -0.23085 -0.00012542 0.7313 0.00039729 543.272199747343 34.153 0.49969 30.167 29.929 30.429 -3.9853 63 27 3 0 0 0 0.11784 2 19778 19647;19778 31.268 4.5373 1 39637000 20081 10692 13764 14015 23674;23675 23675 -0.008726157049068206 HPIDSQVAM 9 Oxidation (M) _HPIDSQVAM(Oxidation (M))_ HPIDSQVAM(1) HPIDSQVAM(71) 0 0 1 nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2398986816406 2 507.239667 1012.46478 1.0879 0.00055184 -0.0467 -2.3688E-05 1.0412 0.00052816 507.2395154123027 20.815 0.47643 18.122 17.977 18.453 -2.693 48 28 2 0 0 0 0.013323 1 11175 11175 71.134 27.275 1 3745700 20082 5834 13765 14016 23676 23676 1051 -0.04095353222248832 HPIDSQVAM 9 Unmodified _HPIDSQVAM_ 0 0 0 nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2421569824219 2 499.242209 996.469866 1.3821 0.00069 -0.49133 -0.0002453 0.89075 0.0004447 499.2420201989567 34.115 0.4635 30.129 29.842 30.306 -3.9853 40 25 2 0 0 0 0.03568 1 19545 19545 52.268 23.187 1 13543000 20083 5834 13765 14017 23677 23677 -0.02851049359640001 HPIEGLAVMY 10 Oxidation (M) _HPIEGLAVM(Oxidation (M))Y_ HPIEGLAVM(1)Y HPIEGLAVM(93)Y 0 0 1 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2880859375 2 573.286617 1144.55868 0.082331 4.7199E-05 -0.60332 -0.00034588 -0.52099 -0.00029868 573.2863577252359 48.902 0.30159 48.902 48.761 49.062 0 34 14 3 0 0 0 0.0071864 1 26852 26852 92.822 73.565 1 9757000 20084 3876 13766 14018 23678 23678 688 -0.007816341199941235 HPIEGLAVMY 10 Oxidation (M) _HPIEGLAVM(Oxidation (M))Y_ HPIEGLAVM(1)Y HPIEGLAVM(71)Y 0 0 1 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7869262695312 2 573.286617 1144.55868 0.70994 0.000407 -0.15876 -9.1013E-05 0.55118 0.00031599 573.2865576476913 49.279 0.34613 48.907 48.714 49.06 -0.37172 41 16 3 0 0 0 0.024981 2 26427 26427;26537 71.134 54.191 1 14160000 20085 3876 13766 14018 23679;23680 23679 688 -0.007816341199941235 HPIEGLAVMY 10 Unmodified _HPIEGLAVMY_ 0 0 0 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2891235351562 2 565.289159 1128.56377 0.9954 0.00056269 0.27375 0.00015475 1.2692 0.00071744 565.2888836737834 64.956 0.53218 58.78 58.54 59.072 -6.1757 48 29 2 0 0 0 0.1028 1 42242 42242 46.021 24.274 1 22524000 20086 3876 13766 14019 23681 23681 0.004626697426374449 HPIEGLAVMY 10 Unmodified _HPIEGLAVMY_ 0 0 0 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.289159 1128.56377 0.46644 0.00026368 1.6279 0.00092022 2.0943 0.0011839 565.2894648490638 59.127 0.19404 58.636 58.535 58.729 -0.49079 -0.072006 0.0013921 NaN 46.021 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1055700 20087 3876 13766 14019 0.004626697426374449 HPIEGSTTVF 10 Unmodified _HPIEGSTTVF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2744750976562 2 544.274564 1086.53457 0.25635 0.00013952 -1.174 -0.00063896 -0.91762 -0.00049944 544.2738041314706 39.498 0.84947 39.498 39.282 40.131 0 136 41 6 0 0 0 0.024981 2 21097 21097;21212 71.134 45.734 1 426730000 20088 7904 13767 14020 23682;23683 23682 -0.005231512819818818 HPIEGSTTVF 10 Unmodified _HPIEGSTTVF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2747192382812 2 544.274564 1086.53457 -0.1852 -0.0001008 -0.041878 -2.2793E-05 -0.22708 -0.00012359 544.2744862638501 39.8 0.44904 39.503 39.264 39.713 -0.29716 69 21 4 0 0 0 0.0071864 2 20954 20954;21057 92.822 60.517 1 55313000 20089 7904 13767 14020 23684;23685 23684 -0.005231512819818818 HPIEGSTTVF 10 Unmodified _HPIEGSTTVF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2734985351562 2 544.274564 1086.53457 0.29011 0.0001579 -0.63445 -0.00034531 -0.34434 -0.00018741 544.2741542160267 39.453 0.37495 39.465 39.259 39.634 0.011456 38 17 3 0 0 0 0.024981 2 20958 20958;21058 71.134 45.734 1 7788900 20090 7904 13767 14020 23686;23687 23686 -0.005231512819818818 HPIEGSTTVF 10 Unmodified _HPIEGSTTVF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2750244140625 2 544.274564 1086.53457 0.42362 0.00023057 -0.21057 -0.00011461 0.21305 0.00011596 544.2744169114106 44.929 0.65511 40.077 39.759 40.414 -4.852 166 48 5 0 0 0 0.013474 4 27274 27274;27398;27542;27684 81.613 55.345 1 835610000 20091 7904 13767 14020 23688;23689;23690;23691 23688 -0.005231512819818818 HPIEIARQL 9 Unmodified _HPIEIARQL_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2 ENSG00000115904|ENST00000402219|SOS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.814208984375 2 538.81419 1075.61383 -0.63445 -0.00034185 1.7275 0.00093081 1.0931 0.00058896 538.8149762641646 36.232 0.22057 35.983 35.866 36.086 -0.2497 21 9 3 0 0 0 0.044042 1 19010 19010 51.63 30.093 1 3620100 20092 3173;1835 13768 14021 23692 23692 0.07904540462800469 HPIEIARQL 9 Unmodified _HPIEIARQL_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2 ENSG00000115904|ENST00000402219|SOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8806457519531 3 359.545219 1075.61383 1.1339 0.00040768 0.98078 0.00035264 2.1147 0.00076032 359.5452864831339 40.377 0.44046 35.848 35.672 36.113 -4.5294 34 28 2 0 0 0 0.017075 1 24017 24017 66.457 46.042 1 10929000 20093 3173;1835 13768 14021 23693 23693 0.07904540462800469 HPIEIARQL 9 Unmodified _HPIEIARQL_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2 ENSG00000115904|ENST00000402219|SOS1;ENSG00000100485|ENST00000216373|SOS2 ENSG00000115904|ENST00000402219|SOS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 359.545219 1075.61383 -0.52773 -0.00018974 2.0705 0.00074446 1.5428 0.00055471 359.5459487799163 36.242 0.18018 35.993 35.906 36.086 -0.2497 0.072462 0.00036038 NaN 66.457 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1124300 20094 3173;1835 13768 14021 0.07904540462800469 HPIETLVDIF 10 Unmodified _HPIETLVDIF_ 0 0 0 nc|ENSG00000112715|P15692-14|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-10|VEGFA;ENST00000518538.5_1_6:43738983-43746656:+|nuORF;nc|ENSG00000112715|P15692-2|VEGFA;nc|ENSG00000112715|P15692-3|VEGFA;nc|ENSG00000112715|P15692-8|VEGFA;nc|ENSG00000112715|P15692-4|VEGFA;nc|ENSG00000112715|P15692-5|VEGFA;nc|ENSG00000112715|P15692-6|VEGFA;nc|ENSG00000112715|P15692-9|VEGFA;nc|ENSG00000112715|P15692-1|VEGFA nc|ENSG00000112715|P15692-14|VEGFA nc|ENSG00000112715|P15692-14|VEGFA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3207397460938 2 592.321514 1182.62847 NaN NaN NaN NaN NaN NaN NaN 85.147 1 84.645 84.145 85.145 -0.5015 0 0 0 0.61917 1 46590 46590 20.454 13.164 1 20095 2914 13769 14022 23694 23694 0.04446567820264136 HPIEVQQTGF 10 Unmodified _HPIEVQQTGF_ 0 0 0 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2936401367188 2 578.293288 1154.57202 0.66598 0.00038513 -0.19255 -0.00011135 0.47343 0.00027378 578.2932403972022 38.82 0.28865 38.82 38.682 38.97 0 27 12 3 0 0 0 0.024115 1 20755 20755 71.922 44.699 1 3632800 20096 4636 13770 14023 23695 23695 0.0009193998364480649 HPIEVSVGH 9 Unmodified _HPIEVSVGH_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7564086914062 2 487.756341 973.498129 NaN NaN NaN NaN NaN NaN NaN 23.648 1 23.648 23.148 24.148 0 0 0 0 0.15618 1 12060 12060 36.044 12.896 1 20097 5311;14939 13771 14024 23696 23696 0.010320166119640817 HPIEVSVGH 9 Unmodified _HPIEVSVGH_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7566528320312 2 487.756341 973.498129 0.53658 0.00026172 0.4886 0.00023832 1.0252 0.00050004 487.7566018182749 26.656 0.44013 23.705 23.481 23.921 -2.9511 43 22 3 0 0 0 0.00032477 2 14656 14656;14776 147.83 111.79 1 20064000 20098 5311;14939 13771 14024 23697;23698 23697 0.010320166119640817 HPIHIIPASAI 11 Unmodified _HPIHIIPASAI_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8460693359375 2 584.84549 1167.67643 0.62645 0.00036637 0.80778 0.00047243 1.4342 0.0008388 584.8458676092425 49.073 0.20581 49.029 48.908 49.114 -0.04369 22 9 3 0 0 0 0.020698 1 26498 26498 54.774 29.374 1 1983900 20099 9484 13772 14025 23699 23699 0.09929686530995241 HPIHIIPASAI 11 Unmodified _HPIHIIPASAI_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.84549 1167.67643 0.54011 0.00031588 -0.35877 -0.00020982 0.18135 0.00010606 584.8454737244692 49.394 0.19627 49.001 48.922 49.119 -0.3923 -0.01404 -0.00072065 NaN 54.774 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1380300 20100 9484 13772 14025 0.09929686530995241 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8087768554688 2 572.809105 1143.60366 -0.50909 -0.00029161 0.79706 0.00045656 0.28797 0.00016495 572.8095733556484 30.443 0.34411 30.443 30.263 30.607 0 53 16 4 0 0 0 0.014262 1 15779 15779 93.166 36.989 1 34461000 20101 6028 13773 14026 23700 23700 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2081604003906 3 382.208495 1143.60366 -0.82922 -0.00031693 -0.093954 -3.591E-05 -0.92317 -0.00035284 382.20838236123234 30.434 0.28196 30.434 30.305 30.587 0 25 13 2 0 0 0 0.38225 1 15803 15803 22.658 14.214 1 3107300 20102 6028 13773 14026 23701 23701 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8106079101562 2 572.809105 1143.60366 0.74117 0.00042455 1.2376 0.00070889 1.9787 0.0011334 572.8098313953286 30.406 0.34332 30.326 30.178 30.521 -0.080429 38 12 4 0 0 0 0.044673 1 15750 15750 79.596 79.596 1 12688000 20103 6028 13773 14026 23702 23702 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2088928222656 3 382.208495 1143.60366 0.58693 0.00022433 0.58055 0.00022189 1.1675 0.00044622 382.20877586724663 30.392 0.26333 30.311 30.178 30.441 -0.080431 15 9 2 0 0 0 0.6192 1 15787 15787 10.151 8.4083 1 1363600 20104 6028 13773 14026 23703 23703 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8104858398438 2 572.809105 1143.60366 -0.063383 -3.6306E-05 1.4133 0.00080956 1.3499 0.00077325 572.8103246414624 30.191 0.20924 30.221 30.091 30.3 0.030106 18 8 3 0 0 0 0.43662 1 15778 15778 17.113 0.96379 1 974640 20105 6028 13773 14026 23704 23704 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8095703125 2 572.809105 1143.60366 1.4255 0.00081655 -0.11974 -6.8588E-05 1.3058 0.00074796 572.809043035377 34.019 0.60949 30.034 29.714 30.323 -3.9853 109 33 4 0 0 0 0.0030316 3 19691 19445;19567;19691 122.18 63.5 1 194570000 20106 6028 13773 14026 23705;23706;23707 23707 0.037599327375801295 HPIHQGITEL 10 Unmodified _HPIHQGITEL_ 0 0 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2090759277344 3 382.208495 1143.60366 1.7741 0.00067806 -0.43182 -0.00016505 1.3422 0.00051302 382.20833587437335 34.033 0.54013 30.048 29.747 30.287 -3.9853 101 29 5 0 0 0 0.41822 2 19583 19459;19583 20.581 12.04 1 68839000 20107 6028 13773 14026 23708;23709 23709 0.037599327375801295 HPIHQRHITM 10 Unmodified _HPIHQRHITM_ 0 0 0 ENSG00000182957|ENST00000382108|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13;nc|ENSG00000228741|Q96N96-5|SPATA13;nc|ENSG00000228741|Q96N96-2|SPATA13;nc|ENSG00000228741|Q96N96-3|SPATA13 ENSG00000182957|ENST00000382108|SPATA13 ENSG00000182957|ENST00000382108|SPATA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8927917480469 3 423.892624 1268.65604 0.40838 0.00017311 0.70542 0.00029902 1.1138 0.00047213 423.89266285636205 16.028 0.19568 13.471 13.411 13.606 -2.557 51 34 2 0 0 0 0.095786 1 8288 8288 48.073 39.786 1 6741300 20108 9104 13774 14027 23710 23710 0.03246192599522146 HPIIPEQSTF 10 Unmodified _HPIIPEQSTF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.803955078125 2 584.803488 1167.59242 0.43075 0.0002519 1.0867 0.0006355 1.5174 0.00088741 584.8045910553253 48.12 0.3698 47.767 47.535 47.905 -0.3526 39 18 3 0 0 0 0.20195 1 25846 25846 48.346 33.764 1 9679900 20109 7336 13775 14028 23711 23711 0.01533110643413238 HPIIPEQSTF 10 Unmodified _HPIIPEQSTF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8049926757812 2 584.803488 1167.59242 1.1866 0.00069392 1.5049 0.00088006 2.6915 0.001574 584.8040563069214 54.016 0.35415 48.15 47.929 48.283 -5.8653 51 20 3 0 0 0 0.018486 2 34265 34125;34265 96.111 52.339 1 50622000 20110 7336 13775 14028 23712;23713 23713 0.01533110643413238 HPIIYRGAVY 10 Unmodified _HPIIYRGAVY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8291015625 2 594.82984 1187.64513 -0.27616 -0.00016427 0.15748 9.3673E-05 -0.11868 -7.0593E-05 594.8298721354212 35.896 0.20706 35.921 35.826 36.033 0.024967 19 9 3 0 0 0 0.32493 1 18988 18988 30.637 12.502 1 3273200 20111 7825 13776 14029 23714 23714 0.05881113496911894 HPIIYRGAVY 10 Unmodified _HPIIYRGAVY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 594.82984 1187.64513 -0.42548 -0.00025309 2.4586 0.0014625 2.0331 0.0012094 594.8307346489531 36.277 0.1193 36.027 35.927 36.046 -0.2497 0.053289 0.001971 NaN 30.637 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 650020 20112 7825 13776 14029 0.05881113496911894 HPIKQVDVL 9 Unmodified _HPIKQVDVL_ 0 0 0 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.8106079101562 2 524.811116 1047.60768 -0.60011 -0.00031495 -0.33211 -0.00017429 -0.93222 -0.00048924 524.8108953234122 32.78 0.30895 32.78 32.618 32.927 0 45 15 4 0 0 0 0.014182 1 17104 17104 75.761 46.679 1 25210000 20113 2537 13777 14030 23715 23715 0.08578022231290561 HPIKQVDVL 9 Unmodified _HPIKQVDVL_ 0 0 0 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.81103515625 2 524.811116 1047.60768 -0.34614 -0.00018166 0.5087 0.00026697 0.16256 8.5311E-05 524.8113420698517 32.814 0.23953 32.655 32.522 32.762 -0.15918 24 9 3 0 0 0 0.012668 1 17085 17085 61.357 21.4 1 5063700 20114 2537 13777 14030 23716 23716 0.08578022231290561 HPIKQVDVL 9 Unmodified _HPIKQVDVL_ 0 0 0 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8115844726562 2 524.811116 1047.60768 1.2027 0.00063117 -0.35448 -0.00018603 0.84818 0.00044514 524.8108613314605 37.04 0.5009 32.757 32.49 32.991 -4.2835 114 30 6 0 0 0 0.037253 2 21756 21618;21756 39.95 20.693 1 109350000 20115 2537 13777 14030 23717;23718 23718 0.08578022231290561 HPILFLYYED 10 Unmodified _HPILFLYYED_ 0 0 0 ENSG00000173597|ENST00000310613|SULT1B1 ENSG00000173597|ENST00000310613|SULT1B1 ENSG00000173597|ENST00000310613|SULT1B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.3270874023438 2 655.326796 1308.63904 NaN NaN NaN NaN NaN NaN NaN 93.5 1 93.5 93 94 0 0 0 0 0.98914 1 51692 51692 1.8442 0 1 20116 8345 13778 14031 23719 23719 -0.0029344952531573654 HPILNDPIY 9 Unmodified _HPILNDPIY_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2879638671875 2 541.287474 1080.5604 0.31186 0.0001688 -0.037403 -2.0246E-05 0.27445 0.00014856 541.2873994698869 50.217 0.37955 50.217 50.032 50.411 0 40 17 3 0 0 0 0.011671 2 27658 27658;27762 85.357 31.781 1 22656000 20117 7433 13779 14032 23720;23721 23720 0.023337429602861448 HPILNDPIY 9 Unmodified _HPILNDPIY_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2908935546875 2 541.287474 1080.5604 0.57877 0.00031328 0.85175 0.00046104 1.4305 0.00077432 541.2881831657373 50.694 0.40761 50.281 50.051 50.459 -0.41351 45 19 4 0 0 0 0.040683 2 27245 27245;27345 64.236 28.192 1 10728000 20118 7433 13779 14032 23722;23723 23722 0.023337429602861448 HPILNDPIY 9 Unmodified _HPILNDPIY_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2881469726562 2 541.287474 1080.5604 0.39811 0.00021549 0.99525 0.00053871 1.3934 0.0007542 541.28789440937 56.767 0.64469 50.79 50.428 51.073 -5.9769 74 37 3 0 0 0 0.025842 2 36327 36202;36327 54.774 29.374 1 91461000 20119 7433 13779 14032 23724;23725 23725 0.023337429602861448 HPILNDPIY 9 Unmodified _HPILNDPIY_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.287474 1080.5604 1.3003 0.00070386 0.11425 6.1841E-05 1.4146 0.0007657 541.2880003739355 50.33 0.26378 50.281 50.169 50.433 -0.048828 0.021316 -0.00033649 NaN 85.357 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1027700 20120 7433 13779 14032 0.023337429602861448 HPINPRVAL 9 Unmodified _HPINPRVAL_ 0 0 0 ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1;ENST00000586568.1_1_18:47810059-47810392:-|nuORF;ENST00000590234.5_1_18:47810059-47811374:-|nuORF;ENST00000590901.5_1_18:47808965-47812340:-|nuORF ENSG00000154832|ENST00000285106|CXXC1 ENSG00000154832|ENST00000285106|CXXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.804443359375 2 508.803626 1015.5927 -0.53876 -0.00027412 1.5744 0.00080105 1.0356 0.00052693 508.80442703920426 34.084 0.17773 33.893 33.82 33.998 -0.19131 11 6 2 0 0 0 0.43463 1 17826 17826 10.824 0.64053 1 791060 20121 6352 13780 14033 23726 23726 0.08552575153930775 HPINPRVAL 9 Unmodified _HPINPRVAL_ 0 0 0 ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1;ENST00000586568.1_1_18:47810059-47810392:-|nuORF;ENST00000590234.5_1_18:47810059-47811374:-|nuORF;ENST00000590901.5_1_18:47808965-47812340:-|nuORF ENSG00000154832|ENST00000285106|CXXC1 ENSG00000154832|ENST00000285106|CXXC1 MSMS AL20221201_MKP_PDAC_01 4 508.8037414550781 2 508.803626 1015.5927 NaN NaN NaN NaN NaN NaN NaN 38.126 1 33.757 33.257 34.257 -4.3689 0 0 0 0.50124 1 22451 22451 15.847 4.2069 1 20122 6352 13780 14033 23727 23727 0.08552575153930775 HPINTIFFF 9 Unmodified _HPINTIFFF_ 0 0 0 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.301513671875 2 568.300384 1134.58622 NaN NaN NaN NaN NaN NaN NaN 90.243 1 90.286 89.786 90.786 0.042175 0 0 0 0.08978 1 50200 50200 46.021 19.137 1 20123 16215 13781 14034 23728 23728 0.02430637202564867 HPINTIFFFVF 11 Unmodified _HPINTIFFFVF_ 0 0 0 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 nc|ENSG00000136709|Q9C0J8-2|WDR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2483825683594 3 461.248291 1380.72304 0.91197 0.00042065 -0.089662 -4.1356E-05 0.82231 0.00037929 461.5824547088557 47.351 0.37988 47.312 47.118 47.498 -0.038647 28 17 2 0 0 0 0.73237 1 25493 25493 1.2148 0.51716 1 1542500 20124 16215 13782 14035 23729 23729 0.04791126362260911 HPIPAACGIYY 11 Carbamidomethyl (C) _HPIPAAC(Carbamidomethyl (C))GIYY_ HPIPAAC(1)GIYY HPIPAAC(44)GIYY 0 1 0 ENSG00000010017|ENST00000011619|RANBP9;ENST00000602525.5_1_16:67765330-67840439:-|nuORF;nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3050537109375 2 631.305341 1260.59613 0.17563 0.00011088 -0.9886 -0.00062411 -0.81297 -0.00051324 631.3057868661115 48.321 0.26979 47.949 47.812 48.081 -0.37172 24 13 3 0 0 0 0.083339 1 25914 25914 44.407 23.953 1 4149500 20125 411 13783 14036 23730 23730 22 -0.02374542854363426 HPIPAACGIYY 11 Carbamidomethyl (C) _HPIPAAC(Carbamidomethyl (C))GIYY_ HPIPAAC(1)GIYY HPIPAAC(44)GIYY 0 1 0 ENSG00000010017|ENST00000011619|RANBP9;ENST00000602525.5_1_16:67765330-67840439:-|nuORF;nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MSMS AL20221201_MKP_PDAC_01 4 631.3057861328125 2 631.305341 1260.59613 NaN NaN NaN NaN NaN NaN NaN 53.843 1 48.038 47.538 48.538 -5.8042 0 0 0 0.13883 1 34074 34074 44.407 14.97 1 20126 411 13783 14036 23731 23731 22 -0.02374542854363426 HPIPAACGIYY 11 Carbamidomethyl (C) _HPIPAAC(Carbamidomethyl (C))GIYY_ HPIPAAC(1)GIYY HPIPAAC(54)GIYY 0 1 0 ENSG00000010017|ENST00000011619|RANBP9;ENST00000602525.5_1_16:67765330-67840439:-|nuORF;nc|ENSG00000141084|Q6VN20-3|RANBP10;ENSG00000141084|ENST00000317506|RANBP10 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MSMS AL20221201_MKP_PDAC_01 4 631.3077392578125 2 631.305341 1260.59613 NaN NaN NaN NaN NaN NaN NaN 54.098 1 48.232 47.732 48.732 -5.8653 0 0 0 0.082301 1 34268 34268 53.576 30.839 1 20127 411 13783 14036 23732 23732 22 -0.02374542854363426 HPIPPQGGKL 10 Unmodified _HPIPPQGGKL_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3027954101562 2 522.303458 1042.59236 0.30329 0.00015841 0.78117 0.00040801 1.0845 0.00056642 522.3027426207447 72.064 0.5269 72.103 71.768 72.295 0.039024 70 25 4 0 0 0 0.33553 1 39772 39772 25.399 0 1 7883300 20128 9220 13784 14037 23733 23733 0.07277155434098859 HPIPRVFQNRF 11 Unmodified _HPIPRVFQNRF_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF;ENST00000459854.5_1_22:19459324-19466647:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9306335449219 3 470.929955 1409.76804 NaN NaN NaN NaN NaN NaN NaN 39.883 1 39.888 39.388 40.388 0.0050545 0 0 0 0.78351 1 21253 21253 12.856 6.9878 1 20129 1014 13785 14038 23734 23734 0.07954369948174644 HPIPRVFQNRF 11 Unmodified _HPIPRVFQNRF_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF;ENST00000459854.5_1_22:19459324-19466647:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.9309692382812 3 470.929955 1409.76804 1.2094 0.00056953 -0.047288 -2.2269E-05 1.1621 0.00054726 470.9301063851578 79.28 0.5419 73.104 72.762 73.304 -6.1757 44 29 2 0 0 0 0.50268 2 51937 51754;51937 16.275 7.5228 1 9378700 20130 1014 13785 14038 23735;23736 23736 0.07954369948174644 HPIPTYPSY 9 Unmodified _HPIPTYPSY_ 0 0 0 nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2 nc|ENSG00000179348|P23769-2|GATA2 nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7658081054688 2 537.766374 1073.5182 -0.14713 -7.912E-05 -0.32575 -0.00017518 -0.47288 -0.0002543 537.76551360408 39.544 0.32218 39.247 39.029 39.351 -0.29716 34 14 3 0 0 0 0.052168 1 20818 20818 44.407 15.92 1 3767000 20131 8830 13786 14039 23737 23737 -0.01562232448100076 HPIPYYNRNFS 11 Unmodified _HPIPYYNRNFS_ 0 0 0 ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.8984375 3 469.898321 1406.67313 0.81012 0.00038068 -0.34164 -0.00016053 0.46849 0.00022014 469.8981132774277 35.126 0.39116 31.031 30.817 31.208 -4.0951 53 22 3 0 0 0 0.67037 1 20271 20271 7.0371 0 1 26881000 20132 15814 13787 14040 23738 23738 -0.013936083136968591 HPIPYYNRNFS 11 Unmodified _HPIPYYNRNFS_ 0 0 0 ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 469.898321 1406.67313 0.23238 0.00010919 0.86427 0.00040612 1.0967 0.00051532 469.8980631760283 31.132 0.18117 31.132 31.013 31.194 0 0.10903 0.00073828 NaN 7.0371 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 828570 20133 15814 13787 14040 -0.013936083136968591 HPIPYYNRNFS 11 Unmodified _HPIPYYNRNFS_ 0 0 0 ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 469.898321 1406.67313 0.3364 0.00015808 0.4087 0.00019205 0.7451 0.00035012 470.2327860019496 31.115 0.27174 31.012 30.864 31.136 -0.10269 -0.010622 9.6057E-05 NaN 7.0371 30 10 4 NaN NaN NaN NaN 0 NaN NaN 0 8535100 20134 15814 13787 14040 -0.013936083136968591 HPIPYYNRNFS 11 Unmodified _HPIPYYNRNFS_ 0 0 0 ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF ENST00000602065.5_1_19:51714364-51714690:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 469.898321 1406.67313 0.81012 0.00038068 -0.34164 -0.00016053 0.46849 0.00022014 469.8981132774277 35.126 0.39116 31.031 30.817 31.208 -4.0951 0.0083326 -0.00096169 NaN 7.0371 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 26881000 20135 15814 13787 14040 -0.013936083136968591 HPIQGHRVEV 10 Unmodified _HPIQGHRVEV_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2162475585938 3 391.215873 1170.62579 -0.6171 -0.00024142 0.77646 0.00030376 0.15936 6.2345E-05 391.21634640757657 17.076 0.10876 17.076 17.044 17.153 0 31 21 2 0 0 0 0.68209 1 8390 8390 4.7159 2.8095 1 816170 20136 8707 13788 14041 23739 23739 0.04730157205995056 HPIQMYQVEF 10 Unmodified _HPIQMYQVEF_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3123168945312 2 646.310623 1290.60669 NaN NaN NaN NaN NaN NaN NaN 61.626 1 61.138 60.638 61.638 -0.48764 0 0 0 0.54588 1 33567 33567 24.021 10.115 1 20137 929 13789 14042 23740 23740 -0.02698560199928579 HPIQMYQVEF 10 Oxidation (M) _HPIQM(Oxidation (M))YQVEF_ HPIQM(1)YQVEF HPIQM(63)YQVEF 0 0 1 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MSMS AL20221201_MKP_PDAC_01 4 654.3092041015625 2 654.308081 1306.60161 NaN NaN NaN NaN NaN NaN NaN 56.22 1 50.244 49.744 50.744 -5.9769 0 0 0 0.029584 1 35858 35858 62.573 16.873 1 20138 929 13789 14043 23741 23741 143 -0.039428640625601474 HPIQMYQVEF 10 Oxidation (M) _HPIQM(Oxidation (M))YQVEF_ HPIQM(1)YQVEF HPIQM(65)YQVEF 0 0 1 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MSMS AL20221201_MKP_PDAC_01 4 654.3102416992188 2 654.308081 1306.60161 NaN NaN NaN NaN NaN NaN NaN 56.413 1 50.436 49.936 50.936 -5.9769 0 0 0 0.0192 1 35991 35991 65.235 30.303 1 20139 929 13789 14043 23742 23742 143 -0.039428640625601474 HPIQQVFQQ 9 Unmodified _HPIQQVFQQ_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L nc|ENSG00000243244|Q9Y6Q2-3|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7957763671875 2 562.795998 1123.57744 -0.23296 -0.00013111 -0.49221 -0.00027701 -0.72517 -0.00040812 562.7958765764838 25.918 0.26857 25.918 25.779 26.047 0 31 12 3 0 0 0 0.41742 1 13284 13284 11.64 0.14559 1 3833300 20140 986 13790 14044 23743 23743 0.020596635660922402 HPIQTQAQY 9 Unmodified _HPIQTQAQY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2716674804688 2 543.272355 1084.53016 -0.27094 -0.00014719 0.49969 0.00027147 0.22874 0.00012427 543.2725903631788 20.938 0.25569 20.938 20.799 21.055 0 150 46 4 0 0 0 0.011968 2 10515 10515;10618 74.929 36.955 1 16755000 20141 6810 13791 14045 23744;23745 23744 -0.008726157049068206 HPIQTQAQY 9 Unmodified _HPIQTQAQY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.272216796875 2 543.272355 1084.53016 0.12857 6.9848E-05 0.37103 0.00020157 0.4996 0.00027142 543.2724503962256 20.844 0.12097 20.855 20.776 20.897 0.010553 8 5 2 0 0 0 0.07916 1 10650 10650 37.974 27.15 1 1770800 20142 6810 13791 14045 23746 23746 -0.008726157049068206 HPIQTQAQY 9 Unmodified _HPIQTQAQY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2722778320312 2 543.272355 1084.53016 0.09612 5.222E-05 0.42466 0.0002307 0.52078 0.00028292 543.2726111936709 23.887 0.58176 21.06 20.828 21.41 -2.8273 109 34 5 0 0 0 0.009483 3 12955 12849;12955;13079 81.89 38.032 1 56598000 20143 6810 13791 14045 23747;23748;23749 23748 -0.008726157049068206 HPIQVSIHI 9 Unmodified _HPIQVSIHI_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3033447265625 2 522.303458 1042.59236 0.30329 0.00015841 0.78117 0.00040801 1.0845 0.00056642 522.3027426207447 72.064 0.5269 72.103 71.768 72.295 0.039024 70 25 4 0 0 0 0.20428 1 39668 39668 22.736 3.4793 1 7883300 + 20144 20360 13792 14046 23750 23750 0.07277155434098859 HPIRIADGY 9 Unmodified _HPIRIADGY_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5 ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2783203125 2 521.277441 1040.54033 -0.017607 -9.1779E-06 0.70076 0.00036529 0.68315 0.00035611 521.2778885041489 29.405 0.22785 29.405 29.262 29.489 0 34 10 4 0 0 0 0.014417 1 15205 15205 69.105 43.706 1 21596000 20145 6071 13793 14047 23751 23751 0.021679920203496295 HPIRIADGY 9 Unmodified _HPIRIADGY_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5 ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2782592773438 2 521.277441 1040.54033 0.53632 0.00027957 -0.39034 -0.00020348 0.14598 7.6094E-05 521.2772392064966 29.358 0.14112 29.296 29.182 29.323 -0.062159 9 5 2 0 0 0 0.020973 1 15176 15176 62.573 22.615 1 6958500 20146 6071 13793 14047 23752 23752 0.021679920203496295 HPIRIADGY 9 Unmodified _HPIRIADGY_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5 ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2777099609375 2 521.277441 1040.54033 -0.0019935 -1.0391E-06 1.2927 0.00067384 1.2907 0.0006728 521.2778773269073 29.162 0.14766 29.192 29.127 29.274 0.030106 9 5 2 0 0 0 0.30202 1 15228 15228 17.113 7.7655 1 1494500 20147 6071 13793 14047 23753 23753 0.021679920203496295 HPIRIADGY 9 Unmodified _HPIRIADGY_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5 ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2774658203125 2 521.277441 1040.54033 0.60889 0.0003174 0.2296 0.00011968 0.83849 0.00043709 521.2776259527141 32.996 0.46691 29.14 28.904 29.371 -3.8562 76 29 3 0 0 0 0.14 2 18801 18801;18930 29.082 14.243 1 223280000 20148 6071 13793 14047 23754;23755 23754 0.021679920203496295 HPIRLGLAL 9 Unmodified _HPIRLGLAL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.3172607421875 2 495.316369 988.618185 0.17132 8.486E-05 0.81883 0.00040558 0.99015 0.00049044 495.3167566952799 54.241 0.33717 54.174 54.001 54.338 -0.066936 49 16 4 0 0 0 0.016184 2 29402 29402;29509 67.344 13.768 1 17624000 20149 4588;4050;2621;7941 13794 14048 23756;23757 23756 0.12342049676362876 HPIRLGLAL 9 Unmodified _HPIRLGLAL_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF ENSG00000108953|ENST00000264335|YWHAE;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.3173828125 2 495.316369 988.618185 1.1247 0.0005571 0.23175 0.00011479 1.3565 0.00067189 495.31653565917355 88.978 0.68498 82.803 82.373 83.058 -6.1757 72 38 2 0 0 0 0.026094 3 58501 58501;58630;58796 57.471 20.63 1 21285000 20150 4588;4050;2621;7941 13794 14048 23758;23759;23760 23758 0.12342049676362876 HPIRVVNAL 9 Unmodified _HPIRVVNAL_ 0 0 0 ENST00000470043.1_1_10:103792731-103793132:-|nuORF;ENSG00000120029|ENST00000370033|ARMH3 ENST00000470043.1_1_10:103792731-103793132:-|nuORF ENST00000470043.1_1_10:103792731-103793132:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8121948242188 2 509.811451 1017.60835 -0.58572 -0.00029861 0.46111 0.00023508 -0.12461 -6.3528E-05 509.81172590744546 35.162 0.27926 34.939 34.808 35.087 -0.2224 29 12 3 0 0 0 0.042911 1 18383 18383 48.346 19.264 1 7544500 20151 3489 13795 14049 23761 23761 0.10024861670990504 HPIRVVNAL 9 Unmodified _HPIRVVNAL_ 0 0 0 ENST00000470043.1_1_10:103792731-103793132:-|nuORF;ENSG00000120029|ENST00000370033|ARMH3 ENST00000470043.1_1_10:103792731-103793132:-|nuORF ENST00000470043.1_1_10:103792731-103793132:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8116455078125 2 509.811451 1017.60835 0.28418 0.00014488 0.36046 0.00018376 0.64463 0.00032864 509.8116289939903 34.894 0.30573 34.921 34.796 35.102 0.027401 37 13 4 0 0 0 0.0082281 1 18396 18396 92.822 48.964 1 12501000 20152 3489 13795 14049 23762 23762 0.10024861670990504 HPIRVVNAL 9 Unmodified _HPIRVVNAL_ 0 0 0 ENST00000470043.1_1_10:103792731-103793132:-|nuORF;ENSG00000120029|ENST00000370033|ARMH3 ENST00000470043.1_1_10:103792731-103793132:-|nuORF ENST00000470043.1_1_10:103792731-103793132:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8116760253906 2 509.811451 1017.60835 0.43718 0.00022288 0.33832 0.00017248 0.77549 0.00039536 509.81149919806194 39.661 0.40576 35.21 34.98 35.385 -4.4509 70 25 3 0 0 0 0.0082281 2 23470 23470;23607 92.822 50.728 1 97177000 20153 3489 13795 14049 23763;23764 23763 0.10024861670990504 HPISSEELL 9 Unmodified _HPISSEELL_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2477416992188 2 512.769114 1023.52368 0.063332 3.2474E-05 0.52833 0.00027091 0.59166 0.00030338 512.7693719086476 43.427 0.24211 43.427 43.341 43.583 0 29 11 3 0 0 0 0.18118 1 23589 23589 18.135 2.2878 1 11637000 20154 4656 13796 14050 23765 23765 0.01285446343717922 HPISSEELL 9 Unmodified _HPISSEELL_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 512.769114 1023.52368 0.59584 0.00030553 -0.049305 -2.5282E-05 0.54654 0.00028025 512.7688276033343 48.835 0.26657 43.439 43.273 43.54 -5.3961 0.0058921 -0.00043686 NaN 18.135 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 26951000 20155 4656 13796 14050 0.01285446343717922 HPISSGLEAM 10 Oxidation (M) _HPISSGLEAM(Oxidation (M))_ HPISSGLEAM(1) HPISSGLEAM(57) 0 0 1 ENSG00000110395|ENST00000264033|CBL;CBL|p.A223P|1|0.1|ENSG00000110395|chr11:119273944-119273944|G/C|missense_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2523193359375 2 529.252774 1056.491 0.53966 0.00028561 0.74707 0.00039539 1.2867 0.00068101 529.2529222940045 28.191 0.24544 25.043 24.896 25.142 -3.1482 18 12 2 0 0 0 0.051739 1 15702 15702 57.471 21.344 1 3744900 20156 2716 13797 14051 23766 23766 470 -0.034990840507816756 HPISSGLEAM 10 Unmodified _HPISSGLEAM_ 0 0 0 ENSG00000110395|ENST00000264033|CBL;CBL|p.A223P|1|0.1|ENSG00000110395|chr11:119273944-119273944|G/C|missense_variant ENSG00000110395|ENST00000264033|CBL ENSG00000110395|ENST00000264033|CBL MSMS AL20221201_MKP_PDAC_01 4 521.2548828125 2 521.255317 1040.49608 NaN NaN NaN NaN NaN NaN NaN 43.373 1 38.608 38.108 39.108 -4.7648 0 0 0 0.049482 1 26339 26339 57.471 13.613 1 20157 2716 13797 14052 23767 23767 -0.022547801881728446 HPITQFSLL 9 Unmodified _HPITQFSLL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2971801757812 2 528.297842 1054.58113 0.54857 0.00028981 -0.60556 -0.00031992 -0.056988 -3.0107E-05 528.2971967577138 68.586 0.43304 68.611 68.337 68.77 0.025146 34 20 2 0 0 0 0.021948 1 37636 37636 68.081 28.123 1 4450900 20158 6489 13798 14053 23768 23768 0.05602333339948018 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.24560546875 2 480.245275 958.475997 0.29395 0.00014117 -0.19622 -9.4232E-05 0.09773 4.6935E-05 480.24508514156724 38.018 0.33784 38.018 37.846 38.184 0 43 16 3 0 0 0 0.17881 1 20216 20216 78.445 7.5802 1 79626000 20159 1623 13799 14054 23769 23769 -0.004902078564896328 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.483642578125 1 959.483273 958.475997 0.0323 3.0991E-05 -0.25339 -0.00024312 -0.22109 -0.00021213 959.4835712700232 38.018 0.27922 38.018 37.885 38.165 0 22 13 2 0 0 0 0.28922 1 20337 20337 56.541 13.573 1 1999000 20160 1623 13799 14054 23770 23770 -0.004902078564896328 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2466125488281 2 480.245275 958.475997 0.12951 6.2196E-05 2.6536 0.0012744 2.7832 0.0013366 480.24680114055366 38.343 0.22615 38.056 37.908 38.134 -0.28687 22 9 3 0 0 0 0.35156 1 20162 20162 49.669 6.7009 1 4800000 20161 1623 13799 14054 23771 23771 -0.004902078564896328 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2454528808594 2 480.245275 958.475997 0.78897 0.0003789 -0.71306 -0.00034244 0.075908 3.6455E-05 480.2448269584365 43.271 0.53027 38.506 38.225 38.755 -4.7648 103 36 4 0 0 0 0.2655 3 26138 26138;26273;26414 59.795 25.608 1 244440000 20162 1623 13799 14054 23772;23773;23774 23772 -0.004902078564896328 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.484130859375 1 959.483273 958.475997 0.5482 0.00052599 -0.76854 -0.00073741 -0.22034 -0.00021141 959.4823486210757 43.272 0.3314 38.507 38.318 38.65 -4.7648 40 23 2 0 0 0 0.079151 3 26171 26171;26303;26316 109.63 46.066 1 22161000 20163 1623 13799 14054 23775;23776;23777 23775 -0.004902078564896328 HPITSIEY 8 Unmodified _HPITSIEY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 480.245275 958.475997 0.046875 2.2512E-05 0.58537 0.00028112 0.63225 0.00030364 480.24545360674057 37.935 0.25138 37.952 37.839 38.09 0.01704 -0.056498 0.00016768 NaN 78.445 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1251300 20164 1623 13799 14054 -0.004902078564896328 HPIVNHPLY 9 Unmodified _HPIVNHPLY_ 0 0 0 ENST00000458672.5_1_7:35121204-35144268:-|nuORF ENST00000458672.5_1_7:35121204-35144268:-|nuORF ENST00000458672.5_1_7:35121204-35144268:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8667297363281 3 363.866181 1088.57671 1.3385 0.00048703 -1.1231 -0.00040867 0.21535 7.8357E-05 363.866091882059 48.016 0.40748 42.782 42.58 42.988 -5.2339 38 24 3 0 0 0 0.14602 1 29919 29919 26.268 7.0112 1 11048000 20165 13628 13800 14055 23778 23778 0.03596868917043139 HPIYNIKSL 9 Unmodified _HPIYNIKSL_ 0 0 0 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8106689453125 2 542.811116 1083.60768 -0.1474 -8.0008E-05 0.14375 7.8027E-05 -0.0036503 -1.9814E-06 542.8112071341897 39.821 0.29674 39.524 39.371 39.668 -0.29716 24 14 2 0 0 0 0.0094097 1 20995 20995 82.529 53.448 1 5417600 20166 2799 13801 14056 23779 23779 0.06922022231265146 HPIYNIKSL 9 Unmodified _HPIYNIKSL_ 0 0 0 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.81103515625 2 542.811116 1083.60768 0.28945 0.00015712 0.033047 1.7938E-05 0.3225 0.00017506 542.8113578805907 39.467 0.28882 39.478 39.303 39.592 0.011452 32 13 3 0 0 0 0.011968 2 20983 20983;21081 74.929 38.802 1 7509300 20167 2799 13801 14056 23780;23781 23780 0.06922022231265146 HPIYNIKSL 9 Unmodified _HPIYNIKSL_ 0 0 0 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 ENSG00000111615|ENST00000229214|KRR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8115234375 2 542.811116 1083.60768 0.50225 0.00027263 0.41165 0.00022345 0.9139 0.00049608 542.8111283626222 43.775 0.47938 39.011 38.755 39.235 -4.7648 75 29 3 0 0 0 0.0087873 2 26647 26519;26647 103.35 51.724 1 47765000 20168 2799 13801 14056 23782;23783 23783 0.06922022231265146 HPKDIRESDYF 11 Unmodified _HPKDIRESDYF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.8954772949219 3 469.561486 1405.66263 -0.0060534 -2.8424E-06 0.55209 0.00025924 0.54603 0.0002564 469.56169231853846 29.229 0.30935 29.229 29.102 29.411 0 51 14 5 0 0 0 0.58245 2 15101 15101;15194 12.228 6.1772 1 11445000 20169 7010 13802 14057 23784;23785 23784 -0.02397635758757133 HPKDIRESDYF 11 Unmodified _HPKDIRESDYF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.5622253417969 3 469.561486 1405.66263 0.61548 0.000289 -0.1942 -9.1188E-05 0.42128 0.00019782 469.56118087569223 29.164 0.16574 29.102 29.016 29.182 -0.062159 13 7 2 0 0 0 0.60863 1 15071 15071 10.899 4.2755 1 6253900 20170 7010 13802 14057 23786 23786 -0.02397635758757133 HPKDIRESDYF 11 Unmodified _HPKDIRESDYF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.5609436035156 3 469.561486 1405.66263 -0.0035277 -1.6565E-06 -0.12159 -5.7095E-05 -0.12512 -5.8751E-05 469.5610968946586 29.016 0.092289 29.046 29.009 29.102 0.030106 5 3 2 0 0 0 0.72981 1 15147 15147 1.4551 0.67859 1 1090900 20171 7010 13802 14057 23787 23787 -0.02397635758757133 HPKDIRESDYF 11 Unmodified _HPKDIRESDYF_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000463044.1_1_3:31667577-31674651:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.5619506835938 3 469.561486 1405.66263 0.99277 0.00046617 0.27499 0.00012913 1.2678 0.00059529 469.5613906167379 32.255 0.41842 28.399 28.233 28.652 -3.8562 45 24 2 0 0 0 0.58245 2 18281 18281;18415 12.228 12.228 1 70920000 20172 7010 13802 14057 23788;23789 23788 -0.02397635758757133 HPKGGYIRLI 10 Unmodified _HPKGGYIRLI_ 0 0 0 ENSG00000174840|ENST00000311180|PDE12;nc|ENSG00000174840|Q6L8Q7-2|PDE12 ENSG00000174840|ENST00000311180|PDE12 ENSG00000174840|ENST00000311180|PDE12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2339172363281 3 385.232864 1152.67676 1.4058 0.00054156 -0.16944 -6.5272E-05 1.2364 0.00047629 385.232810839178 32.19 0.46269 28.334 28.086 28.549 -3.8562 65 26 3 0 0 0 0.49559 1 18251 18251 16.566 0.82726 1 63355000 20173 8462 13803 14058 23790 23790 0.10653106250833844 HPKILELEAYT 11 Unmodified _HPKILELEAYT_ 0 0 0 REV__ENSG00000165633|ENST00000332853|VSTM4 REV__ENSG00000165633|ENST00000332853|VSTM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3590698242188 2 657.358628 1312.7027 0.70772 0.00046523 0.37355 0.00024556 1.0813 0.00071079 657.358727372702 73.024 0.39841 72.548 72.318 72.717 -0.47588 48 17 4 0 0 0 0.69316 1 40016 40016 4.897 3.5675 1 1809500 + 20174 22029 13804 14059 23791 23791 0.058859109117975095 HPKKPGHIL 9 Unmodified _HPKKPGHIL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000513638.5_1_1:89876036-89886759:+|nuORF;ENST00000394662.2_1_1:89876036-89887275:+|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3165893554688 2 513.813993 1025.61343 0.06847 3.5181E-05 0.75701 0.00038896 0.82548 0.00042414 513.814297714238 15.24 0.12108 12.713 12.659 12.78 -2.5273 24 17 2 0 0 0 0.23158 1 7783 7783 20.454 16.124 1 1517400 20175 3290 13805 14060 23792 23792 0.10165165533612708 HPKLWPQLA 9 Unmodified _HPKLWPQLA_ 0 0 0 nc|ENSG00000236256|Q14236|DIAPH2-AS1 nc|ENSG00000236256|Q14236|DIAPH2-AS1 nc|ENSG00000236256|Q14236|DIAPH2-AS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2129211425781 3 363.87831 1088.6131 1.7754 0.00064602 0.13083 4.7605E-05 1.9062 0.00069363 363.87837643808183 19.93 0.38493 17.274 17.12 17.505 -2.6564 39 23 2 0 0 0 0.49766 2 10564 10564;10572 7.609 3.4194 1 2802000 20176 16561 13806 14061 23793;23794 23793 0.07233745813755377 HPKPKKCVL 9 Unmodified _HPKPKKCVL_ 0 0 0 REV__ENSG00000144229|ENST00000409968|THSD7B REV__ENSG00000144229|ENST00000409968|THSD7B MSMS AL20221201_MKP_PDAC_01 4 350.5481567382812 3 350.547795 1048.62156 NaN NaN NaN NaN NaN NaN NaN 44.51 1 39.658 39.158 40.158 -4.852 0 0 0 0.82396 1 27185 27185 2.7352 0 1 + 20177 20695 13807 14062 23795 23795 0.09918976458720863 HPKPSGKPLP 10 Unmodified _HPKPSGKPLP_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK;ENST00000512145.1_1_6:18237336-18256602:-|nuORF nc|ENSG00000124795|P35659-2|DEK;ENST00000512145.1_1_6:18237336-18256602:-|nuORF nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2097778320312 3 353.209948 1056.60801 0.86337 0.00030495 1.2883 0.00045504 2.1517 0.00075999 353.5452888236175 15.906 0.12444 13.349 13.274 13.399 -2.557 37 25 2 0 0 0 0.65023 1 8218 8218 8.4443 0.28878 1 1326600 20178 233;14620 13808 14063 23796 23796 0.08197441951142537 HPKPSNTAR 9 Unmodified _HPKPSNTAR_ 0 0 0 REV__nc|ENSG00000132466|O75179-7|ANKRD17 REV__nc|ENSG00000132466|O75179-7|ANKRD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1007.984802246094 1 1007.5381 1006.53083 -0.14601 -0.00014711 1.6046 0.0016167 1.4586 0.0014696 1007.5391818089026 76.238 0.43707 76.238 75.959 76.396 0 34 18 3 0 0 0 0.56345 1 42256 42256 3.5965 0 1 4350400 + 20179 19854 13809 14064 23797 23797 0.02782223734800482 HPKPSNTAR 9 Unmodified _HPKPSNTAR_ 0 0 0 REV__nc|ENSG00000132466|O75179-7|ANKRD17 REV__nc|ENSG00000132466|O75179-7|ANKRD17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1007.5381 1006.53083 -0.14601 -0.00014711 1.6046 0.0016167 1.4586 0.0014696 1007.5391818089026 76.238 0.43707 76.238 75.959 76.396 0 0 0 NaN 3.5965 34 18 3 NaN NaN NaN NaN 0 NaN NaN 0 4350400 + 20180 19854 13809 14064 0.02782223734800482 HPKRPLLAF 9 Unmodified _HPKRPLLAF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3 ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2218017578125 3 360.222188 1077.64473 -0.13192 -4.7519E-05 0.51747 0.0001864 0.38556 0.00013889 360.22240398767354 37.755 0.39042 37.772 37.552 37.942 0.01704 56 18 4 0 0 0 0.42049 1 19982 19982 11.495 3.3392 1 30783000 20181 735 13810 14065 23798 23798 0.109017385676907 HPKRPLLAF 9 Unmodified _HPKRPLLAF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3 ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.82861328125 2 539.829643 1077.64473 -0.047206 -2.5483E-05 0.0015468 8.3501E-07 -0.045659 -2.4648E-05 539.8296635340284 37.758 0.26741 37.775 37.614 37.881 0.01704 21 12 2 0 0 0 0.1685 1 20035 20035 21.747 13.153 1 2667800 20182 735 13810 14065 23799 23799 0.109017385676907 HPKRPLLAF 9 Unmodified _HPKRPLLAF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3 ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2237243652344 3 360.222188 1077.64473 1.8237 0.00065694 -0.35937 -0.00012945 1.4643 0.00052749 360.2220423454726 89.59 0.55774 83.414 83.127 83.685 -6.1757 79 30 3 0 0 0 0.32235 3 59038 59038;59169;59290 16.149 5.2501 1 70419000 20183 735 13810 14065 23800;23801;23802 23800 0.109017385676907 HPKRPLLAF 9 Unmodified _HPKRPLLAF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3 ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.830810546875 2 539.829643 1077.64473 1.0145 0.00054765 1.1639 0.00062829 2.1784 0.0011759 539.8301781721905 89.595 0.37689 83.419 83.255 83.631 -6.1757 30 20 2 0 0 0 0.085319 1 59235 59235 48.346 33.508 1 14276000 20184 735 13810 14065 23803 23803 0.109017385676907 HPKSFIYFF 9 Unmodified _HPKSFIYFF_ 0 0 0 ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8741760253906 3 395.874565 1184.60187 -0.47959 -0.00018986 -0.0031364 -1.2416E-06 -0.48273 -0.0001911 396.2089038541583 19.372 0.13743 19.395 19.32 19.458 0.023106 20 12 2 0 0 0 0.61256 1 9755 9755 0.26902 0.1097 1 915890 20185 14625 13811 14066 23804 23804 0.016949237196058675 HPKSFIYFF 9 Unmodified _HPKSFIYFF_ 0 0 0 ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8743591308594 3 395.874565 1184.60187 -0.46308 -0.00018332 -0.46966 -0.00018593 -0.93274 -0.00036925 395.87435618640956 19.509 0.16161 19.537 19.451 19.613 0.028357 27 17 2 0 0 0 0.61256 1 9856 9856 0.26902 0.1097 1 689420 20186 14625 13811 14066 23805 23805 0.016949237196058675 HPKSFIYFF 9 Unmodified _HPKSFIYFF_ 0 0 0 ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.874565 1184.60187 -0.47959 -0.00018986 -0.0031364 -1.2416E-06 -0.48273 -0.0001911 396.2089038541583 19.372 0.13743 19.395 19.32 19.458 0.023106 -0.026056 7.6405E-05 NaN 0.26902 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 915890 20187 14625 13811 14066 0.016949237196058675 HPKSFIYFF 9 Unmodified _HPKSFIYFF_ 0 0 0 ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF ENST00000512413.1_1_5:115357396-115361812:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 395.874565 1184.60187 -0.039903 -1.5796E-05 -1.3595 -0.0005382 -1.3994 -0.00055399 395.87458198912356 19.439 0.098791 19.447 19.401 19.5 0.0078487 0.026056 -0.0015345 NaN 0.26902 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 352070 20188 14625 13811 14066 0.016949237196058675 HPKSIDLDNY 10 Unmodified _HPKSIDLDNY_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.2959594726562 2 601.296027 1200.5775 -0.52446 -0.00031536 0.62413 0.00037529 0.099664 5.9927E-05 601.2960752000079 31.809 0.23893 31.809 31.681 31.92 0 24 11 3 0 0 0 0.10424 1 16565 16565 45.7 20.3 1 2525500 20189 1350 13812 14067 23806 23806 -0.014763812245519148 HPKSIDLDNY 10 Unmodified _HPKSIDLDNY_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2966918945312 2 601.296027 1200.5775 -0.0056367 -3.3893E-06 0.51565 0.00031006 0.51001 0.00030667 601.2963357416452 35.472 0.35067 31.28 31.143 31.493 -4.1928 36 21 2 0 0 0 0.051223 1 20681 20681 57.722 17.483 1 14094000 20190 1350 13812 14067 23807 23807 -0.014763812245519148 HPKYKSMDK 9 Unmodified _HPKYKSMDK_ 0 0 0 REV__ENSG00000052723|ENST00000060969|SIKE1 REV__ENSG00000052723|ENST00000060969|SIKE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5308837890625 3 378.530581 1132.56991 0.032836 1.2429E-05 1.0149 0.00038418 1.0478 0.00039661 378.531031030057 41.253 0.41069 41.251 40.97 41.381 -0.0017929 28 19 2 0 0 0 0.59218 1 22057 22057 0.96228 0.26461 1 2266800 + 20191 17270 13813 14068 23808 23808 0.008931879741567172 HPKYPDGKTF 10 Unmodified _HPKYPDGKTF_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2048034667969 3 397.204862 1188.59276 NaN NaN NaN NaN NaN NaN NaN 20.057 1 20.085 19.585 20.585 0.028357 0 0 0 0.99248 1 10141 10141 0.62683 0 1 20192 5803 13814 14069 23809 23809 0.006005303632719006 HPKYPDGKTF 10 Unmodified _HPKYPDGKTF_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2052307128906 3 397.204862 1188.59276 0.77084 0.00030618 -0.30744 -0.00012212 0.4634 0.00018406 397.2048227451403 22.348 0.38297 19.614 19.471 19.854 -2.7348 39 20 3 0 0 0 0.38225 1 11984 11984 19.987 15.458 1 6831100 20193 5803 13814 14069 23810 23810 0.006005303632719006 HPLAGIVAL 9 Unmodified _HPLAGIVAL_ 0 0 0 ENSG00000011009|ENST00000374514|LYPLA2 ENSG00000011009|ENST00000374514|LYPLA2 ENSG00000011009|ENST00000374514|LYPLA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 445.7762145996094 2 445.776545 889.538538 NaN NaN NaN NaN NaN NaN NaN 62.368 1 62.336 61.836 62.836 -0.032787 0 0 0 0.09083 1 34071 34071 45.75 17.263 1 20194 431 13815 14070 23811 23811 0.089349830023707 HPLAWVRMLK 10 Unmodified _HPLAWVRMLK_ 0 0 0 REV__ENST00000420219.5_1_13:30932431-30946471:-|nuORF REV__ENST00000420219.5_1_13:30932431-30946471:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5786437988281 3 417.577866 1249.71177 NaN NaN NaN NaN NaN NaN NaN 28.711 1 28.741 28.241 29.241 0.029564 0 0 0 0.97302 1 14956 14956 1.7423 1.0446 1 + 20195 26831 13816 14071 23812 23812 0.09690025787131162 HPLCEGSSATL 11 Carbamidomethyl (C) _HPLC(Carbamidomethyl (C))EGSSATL_ HPLC(1)EGSSATL HPLC(82)EGSSATL 0 1 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2747192382812 2 586.274238 1170.53392 -0.39992 -0.00023446 0.69482 0.00040735 0.2949 0.00017289 586.2747043171496 29.05 0.27878 29.05 28.903 29.182 0 29 13 3 0 0 0 0.0011251 1 15038 15038 81.89 52.809 1 2380400 20196 1772 13817 14072 23813 23813 170 -0.044523139933517086 HPLCEGSSATL 11 Carbamidomethyl (C) _HPLC(Carbamidomethyl (C))EGSSATL_ HPLC(1)EGSSATL HPLC(72)EGSSATL 0 1 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MSMS AL20221201_MKP_PDAC_01 4 586.2772827148438 2 586.274238 1170.53392 NaN NaN NaN NaN NaN NaN NaN 33.229 1 29.373 28.873 29.873 -3.8562 0 0 0 0.020513 1 19041 19041 71.922 37.82 1 20197 1772 13817 14072 23814 23814 170 -0.044523139933517086 HPLCEGSSATL 11 Carbamidomethyl (C) _HPLC(Carbamidomethyl (C))EGSSATL_ HPLC(1)EGSSATL HPLC(72)EGSSATL 0 1 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MSMS AL20221201_MKP_PDAC_01 4 586.27490234375 2 586.274238 1170.53392 NaN NaN NaN NaN NaN NaN NaN 33.437 1 29.452 28.952 29.952 -3.9853 0 0 0 0.020513 1 19175 19175 71.922 37.521 1 20198 1772 13817 14072 23815 23815 170 -0.044523139933517086 HPLCMVIGL 9 Carbamidomethyl (C),Oxidation (M) _HPLC(Carbamidomethyl (C))M(Oxidation (M))VIGL_ HPLC(1)MVIGL HPLCM(1)VIGL HPLC(56)MVIGL HPLCM(56)VIGL 0 1 1 ENSG00000008283|ENST00000360793|CYB561;ENST00000583478.1_1_17:61514659-61514908:-|nuORF;nc|ENSG00000008283|P49447-2|CYB561;ENST00000577368.5_1_17:61512979-61514908:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.274169921875 2 528.272455 1054.53036 -0.086188 -4.5531E-05 1.5874 0.00083856 1.5012 0.00079303 528.2732747804622 56.51 0.3429 56.441 56.115 56.458 -0.068741 27 17 2 0 0 0 0.028712 1 30749 30749 56.048 29.165 1 5749900 20199 383 13818 14073 23816 23816 18 45 0.005273446990941011 HPLDLVKIRF 10 Unmodified _HPLDLVKIRF_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5863037109375 3 413.252036 1236.73428 0.15776 6.5193E-05 0.14365 5.9364E-05 0.30141 0.00012456 413.5863364411655 60.561 0.26374 60.517 60.33 60.594 -0.04351 23 12 3 0 0 0 0.025861 1 32988 32988 68.76 59.784 1 8708600 20200 7265 13819 14074 23817 23817 0.12537948456406411 HPLDLVKIRF 10 Unmodified _HPLDLVKIRF_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2528686523438 3 413.252036 1236.73428 1.3239 0.00054709 0.1966 8.1246E-05 1.5205 0.00062834 413.252045844771 92.058 0.3668 85.882 85.686 86.053 -6.1757 34 21 2 0 0 0 0.018732 1 60849 60849 59.013 48.862 1 12626000 20201 7265 13819 14074 23818 23818 0.12537948456406411 HPLDPIDTVDF 11 Unmodified _HPLDPIDTVDF_ 0 0 0 ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1;ENST00000479495.5_1_3:49140063-49142467:-|nuORF ENSG00000172053|ENST00000306125|QARS1 ENSG00000172053|ENST00000306125|QARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8118896484375 2 634.81151 1267.60847 0.25813 0.00016386 -0.28476 -0.00018077 -0.026636 -1.6909E-05 634.8113034468727 67.822 0.40453 67.822 67.639 68.043 0 44 19 3 0 0 0 0.00047726 2 37775 37775;37874 88.954 52.448 1 6278400 20202 8177 13820 14075 23819;23820 23819 -0.014632279103580004 HPLDPIDTVDF 11 Unmodified _HPLDPIDTVDF_ 0 0 0 ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1;ENST00000479495.5_1_3:49140063-49142467:-|nuORF ENSG00000172053|ENST00000306125|QARS1 ENSG00000172053|ENST00000306125|QARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8129272460938 2 634.81151 1267.60847 0.18196 0.00011551 0.29663 0.0001883 0.47859 0.00030381 634.8114978083582 68.345 0.32695 67.865 67.683 68.01 -0.48071 25 14 2 0 0 0 0.0069872 1 37319 37319 71.922 51.508 1 1652600 20203 8177 13820 14075 23821 23821 -0.014632279103580004 HPLDPVAY 8 Unmodified _HPLDPVAY_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2343139648438 2 456.23471 910.454868 0.76237 0.00034782 -0.37336 -0.00017034 0.38901 0.00017748 456.23463752577277 38.495 0.29269 38.495 38.389 38.682 0 37 15 3 0 0 0 0.2655 2 20533 20533;20640 59.795 59.795 1 3490800 20204 2508 13821 14076 23822;23823 23822 -0.003941731653412717 HPLDPVGTLF 10 Unmodified _HPLDPVGTLF_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2962646484375 2 548.295299 1094.57605 0.49915 0.00027368 -1.0065 -0.00055184 -0.50732 -0.00027816 548.295384113385 72.061 0.44486 71.585 71.242 71.686 -0.47609 46 17 4 0 0 0 0.1028 1 39447 39447 46.021 13.235 1 4286900 20205 4213 13822 14077 23824 23824 0.03254029477329823 HPLDRDYQL 9 Unmodified _HPLDRDYQL_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7898559570312 2 578.790912 1155.56727 -0.63445 -0.00036721 -0.7558 -0.00043745 -1.3903 -0.00080467 578.7903623995551 32.129 0.32058 32.129 31.94 32.261 0 33 15 3 0 0 0 0.030212 1 16774 16774 60.074 31.587 1 2186700 20206 657 13823 14078 23825 23825 -0.004289441591481591 HPLDRDYQL 9 Unmodified _HPLDRDYQL_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MSMS AL20221201_MKP_PDAC_01 4 578.7879638671875 2 578.790912 1155.56727 NaN NaN NaN NaN NaN NaN NaN 36.273 1 32.08 31.58 32.58 -4.1928 0 0 0 0.022336 1 21167 21167 82.529 21.172 1 20207 657 13823 14078 23826 23826 -0.004289441591481591 HPLDTLFLL 9 Unmodified _HPLDTLFLL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3103637695312 2 534.808042 1067.60153 1.5666 0.00083782 -1.0335 -0.00055273 0.53306 0.00028509 534.8074834687706 92.562 0.38804 92.592 92.417 92.805 0.030197 31 14 3 0 0 0 0.0094915 1 51493 51493 81.864 31.009 1 6644800 20208 3740 13824 14079 23827 23827 0.07043503999761924 HPLDTLFLL 9 Unmodified _HPLDTLFLL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8086547851562 2 534.808042 1067.60153 1.1158 0.00059672 -1.1106 -0.00059398 0.0051337 2.7456E-06 534.8076334976722 100.28 0.20918 94.105 93.978 94.187 -6.1757 19 12 3 0 0 0 0.0094915 1 67018 67018 81.864 11.149 1 44520000 20209 3740 13824 14079 23828 23828 0.07043503999761924 HPLDYELTY 9 Unmodified _HPLDYELTY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7739868164062 2 575.774396 1149.53424 0.46704 0.00026891 0.63521 0.00036574 1.1023 0.00063465 575.7745030156345 50.567 0.58928 50.567 50.308 50.897 0 86 31 5 0 0 0 0.0086179 2 27787 27787;27898 89.427 62.543 1 52315000 20210 985 13825 14080 23829;23830 23829 -0.0345457100186195 HPLDYELTY 9 Unmodified _HPLDYELTY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7750244140625 2 575.774396 1149.53424 0.27325 0.00015733 0.76857 0.00044252 1.0418 0.00059985 575.7749166923923 51.152 0.53114 50.738 50.438 50.969 -0.41351 87 26 5 0 0 0 0.0086179 2 27573 27471;27573 89.427 62.543 1 23679000 20211 985 13825 14080 23831;23832 23832 -0.0345457100186195 HPLDYELTY 9 Unmodified _HPLDYELTY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3246459960938 2 575.774396 1149.53424 0.80606 0.00046411 0.52968 0.00030498 1.3357 0.00076909 575.7746813906864 50.792 0.33266 50.738 50.51 50.842 -0.053871 28 16 2 0 0 0 0.1474 1 27413 27413 28.487 13.649 1 2565600 20212 985 13825 14080 23833 23833 -0.0345457100186195 HPLDYELTY 9 Unmodified _HPLDYELTY_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7745971679688 2 575.774396 1149.53424 1.0381 0.00059771 -0.16936 -9.7514E-05 0.86874 0.0005002 575.774298850773 57.443 0.61651 51.415 51.065 51.681 -6.0275 88 33 3 0 0 0 0.0086179 3 36570 36570;36694;36814 89.427 62.543 1 238860000 20213 985 13825 14080 23834;23835;23836 23834 -0.0345457100186195 HPLDYELTYF 10 Unmodified _HPLDYELTYF_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.3106689453125 2 649.308603 1296.60265 0.40764 0.00026468 1.3474 0.00087487 1.755 0.0011396 649.3088114527452 71.407 0.5826 70.929 70.682 71.265 -0.47735 36 24 2 0 0 0 0.20195 1 39037 39037 48.346 36.105 1 1352100 20214 985 13826 14081 23837 23837 -0.033783264220119236 HPLDYRILL 9 Unmodified _HPLDYRILL_ 0 0 0 ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3319702148438 2 570.332216 1138.64988 NaN NaN NaN NaN NaN NaN NaN 63.423 1 62.937 62.437 63.437 -0.48617 0 0 0 0.71252 1 34588 34588 8.7454 4.4162 1 20215 1146 13827 14082 23838 23838 0.08609997639655376 HPLDYRILL 9 Unmodified _HPLDYRILL_ 0 0 0 ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.332763671875 2 570.332216 1138.64988 0.35396 0.00020188 0.51144 0.00029169 0.86541 0.00049357 570.3323813244809 62.895 0.2979 62.874 62.771 63.069 -0.021614 26 14 2 0 0 0 0.171 1 34396 34396 21.537 6.6987 1 5455200 20216 1146 13827 14082 23839 23839 0.08609997639655376 HPLEDRNTI 9 Unmodified _HPLEDRNTI_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7813110351562 2 547.783087 1093.55162 -0.19843 -0.0001087 1.1747 0.00064345 0.97622 0.00053476 547.7839093359016 20.706 0.2729 20.706 20.589 20.861 0 34 20 2 0 0 0 0.27545 2 10452 10412;10452 18.373 5.8415 1 1242500 20217 2532 13828 14083 23840;23841 23841 0.008587693238041538 HPLEDRNTI 9 Unmodified _HPLEDRNTI_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7828979492188 2 547.783087 1093.55162 0.10266 5.6237E-05 0.50197 0.00027497 0.60464 0.00033121 547.7833257345653 23.556 0.37758 20.728 20.537 20.915 -2.8273 38 22 2 0 0 0 0.05483 1 12801 12801 43.772 7.6454 1 5149500 20218 2532 13828 14083 23842 23842 0.008587693238041538 HPLEDRNTIEM 11 Oxidation (M) _HPLEDRNTIEM(Oxidation (M))_ HPLEDRNTIEM(1) HPLEDRNTIEM(77) 0 0 1 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.3212280273438 2 685.822083 1369.62961 0.28423 0.00019493 -1.0517 -0.00072126 -0.76745 -0.00052633 685.8215516675314 23.183 0.40864 20.405 20.148 20.557 -2.7784 69 34 3 0 0 0 0.0039716 1 12507 12507 77.049 56.634 1 10453000 20219 2532 13829 14084 23843 23843 436 -0.04041585873119402 HPLEDRNTIEM 11 Unmodified _HPLEDRNTIEM_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.8255004882812 2 677.824626 1353.6347 1.4318 0.00097054 -0.25039 -0.00016972 1.1815 0.00080082 677.8245806632633 35.944 0.5024 31.752 31.474 31.977 -4.1928 88 31 4 0 0 0 0.0068315 2 20825 20825;20953 94.909 66.414 1 31193000 20220 2532 13829 14085 23844;23845 23844 -0.02797282010510571 HPLEDRNTIEM 11 Unmodified _HPLEDRNTIEM_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2191162109375 3 452.218843 1353.6347 1.4434 0.00065273 -0.59139 -0.00026744 0.85201 0.00038529 452.21860297939895 35.954 0.53931 31.761 31.457 31.996 -4.1928 111 33 4 0 0 0 0.39452 2 21000 20874;21000 21.799 8.9435 1 64636000 20221 2532 13829 14085 23846;23847 23847 -0.02797282010510571 HPLEEKDLWSL 11 Unmodified _HPLEEKDLWSL_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2394714355469 3 456.238232 1365.69287 0.1621 7.3954E-05 0.086876 3.9636E-05 0.24897 0.00011359 456.23805458079556 59.813 0.31975 59.323 59.151 59.471 -0.49079 40 15 4 0 0 0 0.66568 2 32502 32502;32614 7.4771 4.6338 1 5917000 20222 2613 13830 14086 23848;23849 23848 0.0246472290643851 HPLEEKDLWSL 11 Unmodified _HPLEEKDLWSL_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.8525390625 2 683.853709 1365.69287 0.22472 0.00015368 -0.10142 -6.9357E-05 0.1233 8.4318E-05 683.8536695683125 59.827 0.29848 59.336 59.151 59.45 -0.49079 25 14 2 0 0 0 0.07101 1 32525 32525 62.869 47.62 1 3900700 20223 2613 13830 14086 23850 23850 0.0246472290643851 HPLEEKDLWSL 11 Unmodified _HPLEEKDLWSL_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.5723876953125 3 456.238232 1365.69287 1.0762 0.000491 0.45925 0.00020953 1.5354 0.00070053 456.23847608672287 81.685 0.64961 75.509 75.267 75.917 -6.1757 66 36 3 0 0 0 0.038129 2 53719 53586;53719 53.47 36.421 1 27360000 20224 2613 13830 14086 23851;23852 23852 0.0246472290643851 HPLEEKDLWSL 11 Unmodified _HPLEEKDLWSL_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.8544921875 2 683.853709 1365.69287 1.322 0.00090409 -0.16831 -0.0001151 1.1537 0.00078898 683.8536410288611 81.703 0.50474 75.528 75.308 75.812 -6.1757 58 28 3 0 0 0 3.7331E-15 2 53600 53600;53735 150.18 102.58 1 19749000 20225 2613 13830 14086 23853;23854 23853 0.0246472290643851 HPLEGTHEL 9 Unmodified _HPLEGTHEL_ 0 0 0 ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.759521484375 2 516.759081 1031.50361 -0.12593 -6.5075E-05 1.0489 0.00054203 0.92298 0.00047696 516.7596397652351 22.539 0.34957 22.539 22.364 22.714 0 38 16 3 0 0 0 0.042911 2 11522 11427;11522 48.346 21.482 1 3832100 20226 3629 13831 14087 23855;23856 23856 -0.010883045962373217 HPLEGTHEL 9 Unmodified _HPLEGTHEL_ 0 0 0 ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.759033203125 2 516.759081 1031.50361 -0.16177 -8.3599E-05 0.52938 0.00027356 0.36761 0.00018996 516.7593341021088 25.575 0.39223 22.692 22.464 22.856 -2.8831 53 21 3 0 0 0 2.6046E-06 2 14033 13928;14033 156.16 81.733 1 21348000 20227 3629 13831 14087 23857;23858 23858 -0.010883045962373217 HPLEVGLAL 9 Unmodified _HPLEVGLAL_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2641906738281 2 474.779285 947.544017 0.25018 0.00011878 -0.24492 -0.00011628 0.0052586 2.4967E-06 474.7791065918202 63.152 0.28607 63.152 62.985 63.272 0 18 11 2 0 0 0 0.28047 1 35177 35177 18.135 4.6271 1 979750 20228 8499 13832 14088 23859 23859 0.06814661794192034 HPLEVGLAL 9 Unmodified _HPLEVGLAL_ 0 0 0 nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7798461914062 2 474.779285 947.544017 0.40638 0.00019294 0.24768 0.00011759 0.65406 0.00031053 474.77936149561765 63.511 0.37778 63.024 62.771 63.149 -0.48617 37 16 3 0 0 0 0.052168 2 34585 34585;34693 44.407 7.0764 1 2657600 20229 8499 13832 14088 23860;23861 23860 0.06814661794192034 HPLFLSAHPY 10 Unmodified _HPLFLSAHPY_ 0 0 0 ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF ENST00000370068.5_1_1:107683518-107690770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5409545898438 3 394.541586 1180.60293 -0.57189 -0.00022563 0.66705 0.00026318 0.09516 3.7545E-05 394.54186048347333 56.114 0.28939 56.045 55.904 56.194 -0.068737 42 14 4 0 0 0 0.65502 1 30482 30482 4.1895 0 1 36646000 20230 12321 13833 14089 23862 23862 0.01985138088525673 HPLGDFRHTM 10 Oxidation (M) _HPLGDFRHTM(Oxidation (M))_ HPLGDFRHTM(1) HPLGDFRHTM(69) 0 0 1 nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5294799804688 3 409.529352 1225.56623 0.81076 0.00033203 -0.1586 -6.4952E-05 0.65216 0.00026708 409.5294646496569 22.312 0.56145 19.577 19.274 19.835 -2.7348 86 30 4 0 0 0 0.02847 2 12049 11940;12049 68.76 52.465 1 23003000 20231 4057 13834 14090 23863;23864 23864 726 -0.03753481799708425 HPLGDFRHTM 10 Oxidation (M) _HPLGDFRHTM(Oxidation (M))_ 0 0 1 nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 409.529352 1225.56623 -0.51463 -0.00021076 0.87282 0.00035744 0.35818 0.00014669 409.86412481305615 20.023 0.17603 20.023 19.967 20.143 0 0.14603 0.00076405 NaN 68.76 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 368660 20232 4057 13834 14090 726 -0.03753481799708425 HPLGDFRHTM 10 Unmodified _HPLGDFRHTM_ 0 0 0 nc|ENSG00000128283|Q00587-2|CDC42EP1;ENSG00000128283|ENST00000249014|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 nc|ENSG00000128283|Q00587-2|CDC42EP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.1985778808594 3 404.197713 1209.57131 0.72041 0.00029119 0.11983 4.8435E-05 0.84024 0.00033962 404.19766738238906 31.716 0.39957 28.02 27.908 28.307 -3.6958 45 21 3 0 0 0 0.0041527 2 17949 17949;18075 101.12 69.48 1 35266000 20233 4057 13834 14091 23865;23866 23865 -0.025091779370995937 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7638244628906 2 484.763635 967.512717 0.2398 0.00011625 -0.18603 -9.018E-05 0.05377 2.6066E-05 484.76372593994967 64.202 0.59447 64.202 63.879 64.473 0 56 25 3 0 0 0 0.019979 2 35805 35705;35805 63.563 23.606 1 17031000 20234 7904 13835 14092 23867;23868 23868 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7638854980469 2 484.763635 967.512717 0.66961 0.0003246 -0.32544 -0.00015776 0.34417 0.00016684 484.7634112483558 64.616 0.73286 64.13 63.821 64.554 -0.48512 132 33 5 0 0 0 0.012158 4 35222 35122;35222;35319;35428 74.396 34.439 1 119620000 20235 7904 13835 14092 23869;23870;23871;23872 23870 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7638854980469 2 484.763635 967.512717 1.0741 0.0005207 -0.48114 -0.00023324 0.59299 0.00028746 484.76343909000303 64.177 0.4951 64.166 63.919 64.415 -0.010536 62 24 3 0 0 0 0.019979 2 35064 35064;35177 63.563 23.606 1 13605000 20236 7904 13835 14092 23873;23874 23873 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7638549804688 2 484.763635 967.512717 0.86813 0.00042084 -0.08281 -4.0144E-05 0.78532 0.00038069 484.7635307566683 70.058 0.86716 63.882 63.506 64.374 -6.1757 122 48 3 0 0 0 0.012158 4 45827 45586;45698;45827;45953 74.396 34.439 1 224990000 20237 7904 13835 14092 23875;23876;23877;23878 23877 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7640686035156 2 484.763635 967.512717 0.91434 0.00044324 0.04617 2.2382E-05 0.96051 0.00046562 484.7636466408641 72.918 1.6751 66.742 65.814 67.489 -6.1757 116 84 2 0 0 0 0.019979 5 47543 47425;47543;47666;47794;47926 63.563 17.542 1 19887000 20238 7904 13835 14092 23879;23880;23881;23882;23883 23880 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7643127441406 2 484.763635 967.512717 0.97418 0.00047225 0.17988 8.7199E-05 1.1541 0.00055945 484.7636489918612 74.052 0.94244 67.876 67.512 68.454 -6.1757 67 48 2 0 0 0 0.012158 4 48290 48290;48410;48538;48671 74.396 23.606 1 14611000 20239 7904 13835 14092 23884;23885;23886;23887 23884 0.027660887600973183 HPLGDIVAF 9 Unmodified _HPLGDIVAF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.2381896972656 2 484.763635 967.512717 0.91158 0.0004419 -1.8768 -0.00090978 -0.96517 -0.00046788 484.76311991264754 75.22 0.53784 69.044 68.657 69.194 -6.1757 34 28 2 0 0 0 0.16785 1 49240 49240 23.148 1.4018 1 5011300 20240 7904 13835 14092 23888 23888 0.027660887600973183 HPLGIVQGF 9 Unmodified _HPLGIVQGF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2714538574219 2 484.271627 966.528701 0.5498 0.00026625 -1.0626 -0.00051457 -0.51277 -0.00024832 484.2710946241295 57.57 0.49167 57.08 56.858 57.35 -0.48974 62 23 4 0 0 0 0.023761 2 31332 31233;31332 59.795 15.388 1 34306000 20241 10002 13836 14093 23889;23890 23890 0.044097949970023365 HPLGIVQGF 9 Unmodified _HPLGIVQGF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2716369628906 2 484.271627 966.528701 0.87749 0.00042494 -0.33065 -0.00016012 0.54684 0.00026482 484.27137858933594 57.194 0.46114 57.128 56.898 57.359 -0.066036 70 22 4 0 0 0 0.027803 2 31175 31073;31175 56.541 14.447 1 69337000 20242 10002 13836 14093 23891;23892 23892 0.044097949970023365 HPLGIVQGF 9 Unmodified _HPLGIVQGF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2718811035156 2 484.271627 966.528701 1.1712 0.00056718 0.11659 5.6459E-05 1.2878 0.00062364 484.27163265039167 63.634 1.1214 57.458 57.177 58.298 -6.1757 166 61 4 0 0 0 0.016494 5 41310 41036;41177;41310;41455;41595 67.035 16.18 1 237260000 20243 10002 13836 14093 23893;23894;23895;23896;23897 23895 0.044097949970023365 HPLGMAIFL 9 Unmodified _HPLGMAIFL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7779846191406 2 499.778231 997.541908 0.85048 0.00042505 -0.14917 -7.4551E-05 0.70131 0.0003505 499.778088875125 82.836 0.28783 82.898 82.788 83.075 0.062004 24 10 3 0 0 0 0.047696 1 45849 45849 45.75 13.296 1 2946200 20244 7904 13837 14094 23898 23898 0.04303909784709958 HPLGNLSAF 9 Unmodified _HPLGNLSAF_ 0 0 0 ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2522583007812 2 478.253434 954.492316 -0.046023 -2.2011E-05 -0.37252 -0.00017816 -0.41854 -0.00020017 478.2534096992767 51.521 0.18418 51.107 51.028 51.212 -0.41351 15 9 2 0 0 0 0.070838 1 27803 27803 39.957 9.3208 1 2830900 20245 6022 13838 14095 23899 23899 0.01324918100283412 HPLGNLSAF 9 Unmodified _HPLGNLSAF_ 0 0 0 ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2539367675781 2 478.253434 954.492316 0.049253 2.3556E-05 0.46693 0.00022331 0.51619 0.00024687 478.2533769882038 51.151 0.22343 51.097 50.963 51.187 -0.053871 18 10 2 0 0 0 0.14602 1 27673 27673 28.487 10.352 1 2046300 20246 6022 13838 14095 23900 23900 0.01324918100283412 HPLGNLSAF 9 Unmodified _HPLGNLSAF_ 0 0 0 ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 ENSG00000149577|ENST00000324225|SIDT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2544250488281 2 478.253434 954.492316 1.0615 0.00050768 0.75635 0.00036173 1.8179 0.00086941 478.2537646962629 57.447 0.19939 51.42 51.335 51.535 -6.0275 16 10 2 0 0 0 0.042911 1 36752 36752 48.346 12.302 1 13751000 20247 6022 13838 14095 23901 23901 0.01324918100283412 HPLGSFEQM 9 Oxidation (M) _HPLGSFEQM(Oxidation (M))_ HPLGSFEQM(1) HPLGSFEQM(48) 0 0 1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2406616210938 2 531.239667 1060.46478 -0.10425 -5.5382E-05 -0.32336 -0.00017178 -0.42761 -0.00022716 531.2400031493124 29.483 0.44057 29.483 29.202 29.643 0 57 25 4 0 0 0 0.042911 1 15184 15184 48.346 10.372 1 10055000 20248 6670 13839 14096 23902 23902 1165 -0.06303353222256192 HPLGSFEQM 9 Oxidation (M) _HPLGSFEQM(Oxidation (M))_ HPLGSFEQM(1) HPLGSFEQM(78) 0 0 1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2396240234375 2 531.239667 1060.46478 1.1458 0.00060868 0.26734 0.00014202 1.4131 0.0007507 531.2397927539413 33.577 0.50791 29.592 29.386 29.894 -3.9853 49 28 2 0 0 0 0.010877 1 19344 19344 77.984 31.963 1 21189000 20249 6670 13839 14096 23903 23903 1165 -0.06303353222256192 HPLGVLSAF 9 Unmodified _HPLGVLSAF_ 0 0 0 ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1 ENSG00000072858|ENST00000264852|SIDT1 ENSG00000072858|ENST00000264852|SIDT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7661437988281 2 470.766178 939.517802 NaN NaN NaN NaN NaN NaN NaN 67.537 1 67.055 66.555 67.555 -0.48218 0 0 0 0.18911 1 36898 36898 32.117 3.6301 1 20250 1095 13840 14097 23904 23904 0.04562392622710831 HPLHFACLF 9 Carbamidomethyl (C) _HPLHFAC(Carbamidomethyl (C))LF_ HPLHFAC(1)LF HPLHFAC(56)LF 0 1 0 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.284423828125 2 571.284211 1140.55387 1.3572 0.00077536 -2.7915 -0.0015948 -1.4343 -0.0008194 571.2842666056514 94.441 0.25333 88.266 88.118 88.372 -6.1757 22 14 2 0 0 0 0.028712 1 62532 62532 56.048 33.312 1 8124400 20251 10284 13841 14098 23905 23905 929 -0.010784734721028144 HPLHFACLF 9 Carbamidomethyl (C) _HPLHFAC(Carbamidomethyl (C))LF_ 0 1 0 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.284211 1140.55387 0.61496 0.00035131 -2.5439 -0.0014533 -1.9289 -0.001102 571.282929385325 89.168 0.34615 88.664 88.473 88.819 -0.50423 0.19898 2.5112E-05 NaN 56.048 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 391310 20252 10284 13841 14098 929 -0.010784734721028144 HPLHGFREFY 10 Unmodified _HPLHGFREFY_ 0 0 0 REV__ENST00000545377.5_1_5:73218933-73236687:+|nuORF REV__ENST00000545377.5_1_5:73218933-73236687:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8831176757812 3 434.884123 1301.63054 NaN NaN NaN NaN NaN NaN NaN 57.661 1 57.595 57.095 58.095 -0.066036 0 0 0 0.98692 1 31390 31390 2.086 1.5801 1 + 20253 28649 13842 14099 23906 23906 -0.008209586512293754 HPLHRCKL 8 Unmodified _HPLHRCKL_ 0 0 0 REV__ENST00000271636.11_2_1:151509992-151510136:+|nuORF REV__ENST00000271636.11_2_1:151509992-151510136:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1003.232727050781 1 1003.56182 1002.55454 0.38909 0.00039048 0.092975 9.3306E-05 0.48206 0.00048378 1003.5624501376112 27.448 0.2053 27.402 27.306 27.512 -0.046408 13 9 2 0 0 0 8.7369 1 14183 14183 2.8892 0 1 7151600 + 20254 25140 13843 14100 23907 23907 0.053363659676278985 HPLHVISM 8 Oxidation (M) _HPLHVISM(Oxidation (M))_ HPLHVISM(1) HPLHVISM(56) 0 0 1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2503967285156 2 475.249837 948.485122 -0.077616 -3.6887E-05 1.1195 0.00053203 1.0419 0.00049514 475.2505600478233 25.392 0.3925 22.509 22.338 22.73 -2.8831 38 21 2 0 0 0 0.29369 1 13830 13830 56.048 40.28 1 2374600 20255 4927 13844 14101 23908 23908 899 0.008818622282205979 HPLINPVAF 9 Unmodified _HPLINPVAF_ 0 0 0 nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000491633.5_1_3:127394949-127398855:+|nuORF;ENST00000464431.1_1_3:127395028-127395444:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF;ENST00000483857.5_1_3:127391815-127395444:+|nuORF nc|ENSG00000114626|Q969K4-2|ABTB1;ENST00000464431.1_1_3:127395028-127395444:+|nuORF nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.28759765625 2 504.287277 1006.56 0.39544 0.00019942 0.32812 0.00016547 0.72356 0.00036488 504.28758838316526 63.077 0.59762 63.056 62.642 63.24 -0.021614 80 30 4 0 0 0 0.052168 2 34451 34451;34560 44.407 25.15 1 16024000 20256 3049;13718 13845 14102 23909;23910 23909 0.05698368031096379 HPLINPVAF 9 Unmodified _HPLINPVAF_ 0 0 0 nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000491633.5_1_3:127394949-127398855:+|nuORF;ENST00000464431.1_1_3:127395028-127395444:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF;ENST00000483857.5_1_3:127391815-127395444:+|nuORF nc|ENSG00000114626|Q969K4-2|ABTB1;ENST00000464431.1_1_3:127395028-127395444:+|nuORF nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2872009277344 2 504.287277 1006.56 0.9225 0.0004652 0.62208 0.00031371 1.5446 0.00077891 504.28784892014045 68.769 0.47276 62.593 62.289 62.762 -6.1757 41 26 2 0 0 0 0.16776 1 44923 44923 26.341 6.9023 1 17302000 20257 3049;13718 13845 14102 23911 23911 0.05698368031096379 HPLKKQPPSF 10 Unmodified _HPLKKQPPSF_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5604858398438 3 393.560869 1177.66078 -0.022442 -8.8323E-06 0.58317 0.00022951 0.56073 0.00022068 393.5611343257571 19.362 0.24891 19.37 19.28 19.529 0.0078487 25 14 2 0 0 0 0.62068 1 9845 9845 5.7834 2.4638 1 1287300 20258 1209 13846 14103 23912 23912 0.07905400013919461 HPLKKWPM 8 Unmodified _HPLKKWPM_ 0 0 0 ENSG00000163792|ENST00000296096|TCF23 ENSG00000163792|ENST00000296096|TCF23 ENSG00000163792|ENST00000296096|TCF23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.577758789062 1 1036.57607 1035.56879 0.49756 0.00051576 0.6336 0.00065677 1.1312 0.0011725 1036.5730584361456 33.967 0.10722 33.996 33.907 34.014 0.028934 6 4 2 0 0 0 0.80624 1 17890 17890 2.8892 0 1 1442700 20259 7066 13847 14104 23913 23913 0.05243018395913168 HPLKMQSCY 9 Carbamidomethyl (C) _HPLKMQSC(Carbamidomethyl (C))Y_ HPLKMQSC(1)Y HPLKMQSC(89)Y 0 1 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7710571289062 2 582.270444 1162.52633 0.0094667 5.5122E-06 -0.93748 -0.00054587 -0.92802 -0.00054036 582.2703441970325 25.108 0.37419 22.225 22.05 22.425 -2.8831 105 36 4 0 0 0 0.0086209 3 13675 13645;13675;13791 89.401 56.615 1 43075000 20260 4865 13848 14105 23914;23915;23916 23915 502 -0.048427447946096436 HPLKVSLEDLY 11 Unmodified _HPLKVSLEDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.3590087890625 2 657.358628 1312.7027 NaN NaN NaN NaN NaN NaN NaN 57.097 1 57.097 56.597 57.597 0 0 0 0 0.76159 1 31768 31768 13.906 0.86358 1 20261 1002 13849 14106 23917 23917 0.05885910911820247 HPLKVSLEDLY 11 Unmodified _HPLKVSLEDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3568115234375 2 657.358628 1312.7027 0.45632 0.00029997 -0.9533 -0.00062666 -0.49698 -0.00032669 657.3580300928809 57.64 0.32603 57.15 56.984 57.31 -0.48974 53 15 5 0 0 0 0.0086238 2 31277 31277;31378 69.338 46.602 1 19549000 20262 1002 13849 14106 23918;23919 23918 0.05885910911820247 HPLKVSLEDLY 11 Unmodified _HPLKVSLEDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.8607177734375 2 657.358628 1312.7027 1.0921 0.00071792 -0.64406 -0.00042338 0.44807 0.00029454 657.3578347022808 57.18 0.27944 57.114 56.998 57.277 -0.066036 36 13 4 0 0 0 0.010023 1 31099 31099 67.838 49.692 1 11396000 20263 1002 13849 14106 23920 23920 0.05885910911820247 HPLKVSLEDLY 11 Unmodified _HPLKVSLEDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.359375 2 657.358628 1312.7027 -0.1128 -7.4148E-05 0.51218 0.00033668 0.39938 0.00026254 657.3588950166436 85.062 0.53485 78.886 78.675 79.21 -6.1757 86 33 3 0 0 0 0.0011228 3 55940 55940;56071;56204 81.915 59.179 1 70520000 20264 1002 13849 14106 23921;23922;23923 23921 0.05885910911820247 HPLLHRQYY 9 Unmodified _HPLLHRQYY_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5505981445312 3 409.552485 1225.63563 -0.078447 -3.2128E-05 0.67429 0.00027616 0.59585 0.00024403 409.55260187247114 21.916 0.21176 21.93 21.805 22.017 0.013796 27 9 4 0 0 0 0.54816 1 11206 11206 4.5289 1.8976 1 4149700 20265 6951 13850 14107 23924 23924 0.0318334521136876 HPLLHRQYY 9 Unmodified _HPLLHRQYY_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MSMS AL20221201_MKP_PDAC_01 4 409.552978515625 3 409.552485 1225.63563 NaN NaN NaN NaN NaN NaN NaN 25.393 1 22.51 22.01 23.01 -2.8831 0 0 0 0.13831 1 13902 13902 38.176 19.802 1 20266 6951 13850 14107 23925 23925 0.0318334521136876 HPLLKTLEY 9 Unmodified _HPLLKTLEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8201293945312 2 557.318774 1112.623 0.18507 0.00010314 -0.7273 -0.00040534 -0.54224 -0.0003022 557.3187219076327 42.331 0.20254 42.024 41.9 42.102 -0.30682 16 9 2 0 0 0 0.0087399 1 22487 22487 86.332 65.878 1 12903000 20267 1869 13851 14108 23926 23926 0.07118889028470221 HPLLKTLEY 9 Unmodified _HPLLKTLEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3193359375 2 557.318774 1112.623 0.27465 0.00015307 0.11134 6.2055E-05 0.386 0.00021512 557.3189356682593 42.066 0.24947 42.057 41.915 42.164 -0.0088196 25 11 3 0 0 0 0.010362 1 22499 22499 86.332 65.878 1 15638000 20268 1869 13851 14108 23927 23927 0.07118889028470221 HPLLKTLEY 9 Unmodified _HPLLKTLEY_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3197631835938 2 557.318774 1112.623 0.82516 0.00045988 0.36975 0.00020607 1.1949 0.00066595 557.3188634540289 47.031 0.50453 41.951 41.772 42.276 -5.0805 85 46 2 0 0 0 0.0087399 3 29163 29032;29163;29292 86.332 65.878 1 49706000 20269 1869 13851 14108 23928;23929;23930 23929 0.07118889028470221 HPLLPVGHHS 10 Unmodified _HPLLPVGHHS_ 0 0 0 REV__ENST00000568886.5_1_16:70731059-70731143:-|nuORF REV__ENST00000568886.5_1_16:70731059-70731143:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3240356445312 2 547.298707 1092.58286 0.30026 0.00016433 3.0786 0.0016849 3.3789 0.0018493 547.3008583930721 79.267 0.21179 79.322 79.257 79.468 0.05497 9 7 2 0 0 0 0.22993 1 43849 43849 12.532 1.7076 1 1105100 + 20270 28954 13852 14109 23931 23931 0.04027387148562411 HPLLQQQYELY 11 Unmodified _HPLLQQQYELY_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 716.36962890625 2 716.366984 1430.71942 0.26993 0.00019337 2.3786 0.001704 2.6486 0.0018973 716.3686918595092 55.365 0.19065 54.887 54.774 54.964 -0.47798 20 8 3 0 0 0 0.14064 1 30037 30037 39.95 26.907 1 2624900 20271 8764 13853 14110 23932 23932 0.02128411797798435 HPLLQQQYELY 11 Unmodified _HPLLQQQYELY_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526007.5_1_8:145051654-145057989:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 716.366984 1430.71942 0.4204 0.00030116 0.989 0.00070849 1.4094 0.0010096 716.3684980051903 55.048 0.11922 54.979 54.919 55.038 -0.068737 0.045969 -0.001522 NaN 39.95 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1080700 20272 8764 13853 14110 0.02128411797798435 HPLLSGLLY 9 Unmodified _HPLLSGLLY_ 0 0 0 ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;ENSG00000134684|ENST00000373477|YARS1 ENST00000470377.1_1_1:33256708-33272178:-|nuORF ENST00000470377.1_1_1:33256708-33272178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7946472167969 2 506.794935 1011.57532 0.55467 0.00028111 -0.31878 -0.00016156 0.23589 0.00011955 506.7946913675805 72.018 0.34143 72.057 71.829 72.171 0.039024 44 16 4 0 0 0 0.012158 2 39702 39597;39702 74.396 16.642 1 12848000 20273 4629 13854 14111 23933;23934 23934 0.06999234828276713 HPLLSQSY 8 Unmodified _HPLLSQSY_ 0 0 0 ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant;KANSL1|p.S678Efs*13|1|0.03|ENSG00000120071|chr17:46039860-46039873|TGGAAATGCAGGCT/-|frameshift_variant ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.74609375 2 472.745442 943.476331 NaN NaN NaN NaN NaN NaN NaN 34.451 1 34.26 33.76 34.76 -0.19131 0 0 0 0.73801 1 17995 17995 26.341 6.9023 1 20274 3495 13855 14112 23935 23935 0.00233211863383076 HPLLYPDC 8 Unmodified _HPLLYPDC_ 0 0 0 REV__ENST00000580203.1_1_17:60689719-60689923:+|nuORF REV__ENST00000580203.1_1_17:60689719-60689923:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2290649414062 2 479.228571 956.442588 NaN NaN NaN NaN NaN NaN NaN 13.722 1 13.729 13.229 14.229 0.0073986 0 0 0 0.97444 1 6770 6770 0.79363 0 1 + 20275 20851 13856 14113 23936 23936 -0.03737532900026963 HPLNYLNSL 9 Unmodified _HPLNYLNSL_ 0 0 0 REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7855834960938 2 535.785099 1069.55564 0.57469 0.00030791 0.37894 0.00020303 0.95363 0.00051094 535.7853413152321 47.472 0.18055 47.12 47.042 47.223 -0.3526 12 8 2 0 0 0 0.10734 1 25477 25477 32.305 6.9062 1 2621600 + 20276 26349 13857 14114 23937 23937 0.0236485881750923 HPLNYLNSL 9 Unmodified _HPLNYLNSL_ 0 0 0 REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.785099 1069.55564 0.57469 0.00030791 0.37894 0.00020303 0.95363 0.00051094 535.7853413152321 47.472 0.18055 47.12 47.042 47.223 -0.3526 -0.035627 -0.00016633 NaN 32.305 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2621600 + 20277 26349 13857 14114 0.0236485881750923 HPLPDPSLCL 10 Unmodified _HPLPDPSLCL_ 0 0 0 ENST00000229854.11_1_6:52129274-52129361:-|nuORF ENST00000229854.11_1_6:52129274-52129361:-|nuORF ENST00000229854.11_1_6:52129274-52129361:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5238342285156 3 364.523315 1090.54812 1.5482 0.00056436 -0.30823 -0.00011236 1.24 0.00045201 364.52315413907166 34.692 0.3307 30.597 30.486 30.817 -4.0951 30 19 2 0 0 0 0.62068 1 20082 20082 5.7834 2.1964 1 5853300 20278 11068 13858 14115 23938 23938 0.006463832255803936 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3272705078125 2 620.327662 1238.64077 -0.18656 -0.00011573 -1.9908 -0.0012349 -2.1773 -0.0013507 620.3275047249798 30.815 0.56797 30.815 30.503 31.071 0 76 27 4 0 0 0 0.010023 2 16019 15911;16019 67.838 38.757 1 12078000 20279 1197 13859 14116 23939;23940 23940 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8873291015625 3 413.887533 1238.64077 -0.54344 -0.00022492 0.28922 0.0001197 -0.25422 -0.00010522 413.88776513670894 30.772 0.46723 30.772 30.546 31.013 0 32 22 2 0 0 0 0.18636 1 15953 15953 20.871 18.588 1 2179600 20280 1197 13859 14116 23941 23941 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.3282470703125 2 620.327662 1238.64077 0.48142 0.00029864 0.28121 0.00017444 0.76263 0.00047308 620.3278415279755 30.733 0.52522 30.63 30.392 30.917 -0.10269 64 20 4 0 0 0 0.004841 3 15984 15886;15984;16083 75.571 52.834 1 12418000 20281 1197 13859 14116 23942;23943;23944 23943 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8878784179688 3 413.887533 1238.64077 0.46564 0.00019272 0.73615 0.00030468 1.2018 0.00049741 414.22217869596307 30.767 0.4452 30.664 30.419 30.864 -0.10269 32 17 3 0 0 0 0.12183 2 15939 15939;16042 25.997 21.808 1 2356700 20282 1197 13859 14116 23945;23946 23945 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3275756835938 2 620.327662 1238.64077 0.71488 0.00044346 0.11409 7.077E-05 0.82896 0.00051423 620.3277454133388 34.834 0.60271 30.739 30.438 31.041 -4.0951 111 35 4 0 0 0 4.5949E-15 3 19968 19968;20099;20222 136.39 92.534 1 69695000 20283 1197 13859 14116 23947;23948;23949 23947 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.8883972167969 3 413.887533 1238.64077 1.1545 0.00047782 0.45982 0.00019031 1.6143 0.00066814 413.8875139959429 34.796 0.55338 30.701 30.438 30.991 -4.0951 84 32 3 0 0 0 0.0047291 3 19987 19987;20112;20244 53.47 42.571 1 43065000 20284 1197 13859 14116 23950;23951;23952 23950 0.03099604283329427 HPLPETAVRGY 11 Unmodified _HPLPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 620.327662 1238.64077 0.14115 8.7562E-05 0.50825 0.00031528 0.6494 0.00040284 620.3279238389756 30.443 0.1921 30.473 30.393 30.585 0.030106 -0.19146 0.00045037 NaN 136.39 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1032400 20285 1197 13859 14116 0.03099604283329427 HPLPGTQLL 9 Unmodified _HPLPGTQLL_ 0 0 0 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2854309082031 2 488.284734 974.554916 0.50208 0.00024516 0.18545 9.0554E-05 0.68753 0.00033571 488.28488030436876 52.874 0.33287 52.423 52.261 52.594 -0.45173 28 16 2 0 0 0 0.06187 1 28561 28561 42.095 15.211 1 2372600 20286 2748 13860 14117 23953 23953 0.06662064168483539 HPLPGTQLL 9 Unmodified _HPLPGTQLL_ 0 0 0 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 ENSG00000110871|ENST00000288532|COQ5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.7557678222656 2 488.284734 974.554916 1.4593 0.00071255 -2.788 -0.0013613 -1.3287 -0.00064879 488.28354211508145 58.917 0.42607 52.843 52.509 52.935 -6.0745 36 23 2 0 0 0 0.05527 1 37658 37658 50.855 14.389 1 16935000 20287 2748 13860 14117 23954 23954 0.06662064168483539 HPLPGYWSCY 10 Carbamidomethyl (C) _HPLPGYWSC(Carbamidomethyl (C))Y_ HPLPGYWSC(1)Y HPLPGYWSC(60)Y 0 1 0 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 MSMS AL20221201_MKP_PDAC_01 4 640.2828369140625 2 640.281866 1278.54918 NaN NaN NaN NaN NaN NaN NaN 60.474 1 54.326 53.826 54.826 -6.1478 0 0 0 0.0381 1 38919 38919 60.39 25.988 1 20288 9190 13861 14118 23955 23955 860 -0.07895402405506502 HPLPHHKGTF 10 Unmodified _HPLPHHKGTF_ 0 0 0 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 REV__nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8773803710938 3 390.87708 1169.60941 0.40509 0.00015834 0.68975 0.00026961 1.0948 0.00042795 390.87719444248523 50.923 0.51642 50.869 50.49 51.007 -0.053871 72 25 4 0 0 0 0.70951 1 27542 27542 0.77653 0 1 11091000 + 20289 29818 13862 14119 23956 23956 0.03139076039883548 HPLPKRQAL 9 Unmodified _HPLPKRQAL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.885986328125 3 353.885576 1058.6349 1.1159 0.00039491 0.23386 8.2761E-05 1.3498 0.00047767 353.88551085945494 17.403 0.20042 14.817 14.697 14.897 -2.5866 49 35 2 0 0 0 0.070838 2 9065 9054;9065 36.506 16.092 1 4958600 20290 5189 13863 14120 23957;23958 23958 0.10792550562314318 HPLPRKKPGMY 11 Unmodified _HPLPRKKPGMY_ 0 0 0 ENSG00000154640|ENST00000348354|BTG3;nc|ENSG00000154640|Q14201-2|BTG3 ENSG00000154640|ENST00000348354|BTG3 ENSG00000154640|ENST00000348354|BTG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.918212890625 3 441.916658 1322.72815 0.30242 0.00013364 0.64669 0.00028578 0.9491 0.00041942 441.9170629475057 16.345 0.21664 13.788 13.681 13.897 -2.557 52 26 3 0 0 0 0.52864 1 8427 8427 14.957 4.6419 1 2799700 20291 6337 13864 14121 23959 23959 0.07969106953237315 HPLPRVKAETY 11 Unmodified _HPLPRVKAETY_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5780639648438 3 437.5787 1309.71427 0.27527 0.00012045 -0.11316 -4.9517E-05 0.16211 7.0936E-05 437.5785647323621 26.091 0.35487 23.14 23.003 23.358 -2.9511 43 20 3 0 0 0 0.091371 1 14311 14311 43.477 15.296 1 12563000 20292 8577 13865 14122 23960 23960 0.07180152725800326 HPLQSSTGF 9 Unmodified _HPLQSSTGF_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2408447265625 2 487.240524 972.466495 0.74977 0.00036532 -0.98251 -0.00047872 -0.23275 -0.0001134 487.23976574248024 29.112 0.20825 29.05 28.941 29.15 -0.062159 11 8 2 0 0 0 0.018301 1 15036 15036 65.235 19.214 1 2512100 20293 1161 13866 14123 23961 23961 -0.02083976141977928 HPLRRDAAHK 10 Unmodified _HPLRRDAAHK_ 0 0 0 ENST00000318291.4_1_12:752234-753264:+|nuORF ENST00000318291.4_1_12:752234-753264:+|nuORF ENST00000318291.4_1_12:752234-753264:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8938903808594 3 400.895134 1199.66357 0.065573 2.6288E-05 -3.5026 -0.0014042 -3.4371 -0.0013779 400.89382763852024 27.158 0.12437 27.186 27.137 27.261 0.028664 8 5 2 0 0 0 0.52888 1 14125 14125 8.9762 0.82072 1 9569700 20294 11749 13867 14124 23962 23962 0.07172668191446974 HPLSADIAM 9 Oxidation (M) _HPLSADIAM(Oxidation (M))_ HPLSADIAM(1) HPLSADIAM(47) 0 0 1 ENSG00000069399|ENST00000164227|BCL3;ENST00000403534.7_1_19:45250964-45261799:+|nuORF ENSG00000069399|ENST00000164227|BCL3 ENSG00000069399|ENST00000164227|BCL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7379150390625 2 485.73676 969.458967 1.1336 0.00055063 1.4755 0.00071669 2.6091 0.0012673 485.7363139445912 34.16 0.35611 30.175 29.984 30.34 -3.9853 41 19 3 0 0 0 0.045537 1 19711 19711 46.921 8.7697 1 8862100 20295 1003 13868 14125 23963 23963 167 -0.026984517339201375 HPLSDELVNY 10 Unmodified _HPLSDELVNY_ 0 0 0 ENST00000525315.5_1_8:11708209-11710963:-|nuORF;CTSB|p.Y173Lfs*2|1|0.15|ENSG00000164733|chr8:11848081-11848082|-/A|frameshift_variant;ENSG00000164733|ENST00000353047|CTSB ENST00000525315.5_1_8:11708209-11710963:-|nuORF ENST00000525315.5_1_8:11708209-11710963:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7911987304688 2 593.790578 1185.5666 0.71737 0.00042597 1.6811 0.00099824 2.3985 0.0014242 593.7918268143545 46.951 0.37151 46.614 46.483 46.854 -0.33664 32 18 2 0 0 0 0.035244 1 25158 25158 88.904 46.948 1 5125000 20296 14795 13869 14126 23964 23964 -0.01875783598848102 HPLSDELVNY 10 Unmodified _HPLSDELVNY_ 0 0 0 ENST00000525315.5_1_8:11708209-11710963:-|nuORF;CTSB|p.Y173Lfs*2|1|0.15|ENSG00000164733|chr8:11848081-11848082|-/A|frameshift_variant;ENSG00000164733|ENST00000353047|CTSB ENST00000525315.5_1_8:11708209-11710963:-|nuORF ENST00000525315.5_1_8:11708209-11710963:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 593.7905883789062 2 593.790578 1185.5666 NaN NaN NaN NaN NaN NaN NaN 53.421 1 47.617 47.117 48.117 -5.8042 0 0 0 0.02703 1 33764 33764 85.272 50.87 1 20297 14795 13869 14126 23965 23965 -0.01875783598848102 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.274658203125 2 560.275095 1118.53564 -0.0654 -3.6642E-05 -0.23245 -0.00013024 -0.29785 -0.00016688 560.2749112844385 21.995 0.47691 21.995 21.806 22.283 0 180 43 5 0 0 0 0.0057604 4 11183 11070;11083;11183;11281 96.285 0 1 130800000 20298 10298 13870 14127 23966;23967;23968;23969 23968 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8524169921875 3 373.852489 1118.53564 -0.37533 -0.00014032 0.024372 9.1114E-06 -0.35095 -0.00013121 373.8525770401704 21.999 0.35645 21.999 21.888 22.245 0 69 27 4 0 0 0 0.2178 1 11217 11217 21.59 0 1 12754000 20299 10298 13870 14127 23970 23970 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2748413085938 2 560.275095 1118.53564 -0.049552 -2.7763E-05 -2.4601 -0.0013783 -2.5097 -0.0014061 560.2730039600416 23.986 0.34838 23.986 23.771 24.119 0 24 16 2 0 0 0 0.63399 1 12262 12262 9.3831 0 1 724370 20300 10298 13870 14127 23971 23971 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2758178710938 2 560.275095 1118.53564 -0.0019673 -1.1022E-06 0.67466 0.000378 0.67269 0.00037689 560.2753921375706 21.849 0.48203 21.872 21.744 22.226 0.022894 40 21 3 0 0 0 0.18021 2 11074 11074;11169 36.127 0 1 1547800 20301 10298 13870 14127 23972;23973 23972 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2760009765625 2 560.275095 1118.53564 0.54468 0.00030517 0.51578 0.00028898 1.0605 0.00059415 560.2752744918569 21.865 0.35761 21.879 21.705 22.063 0.013796 43 17 3 0 0 0 0.0057604 2 11258 11162;11258 96.285 0 1 5669200 20302 10298 13870 14127 23974;23975 23975 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.27587890625 2 560.275095 1118.53564 0.26299 0.00014735 -0.36845 -0.00020643 -0.10546 -5.9085E-05 560.2748727526898 25.027 0.86707 22.144 21.758 22.625 -2.8831 229 65 5 0 0 0 2.5484E-08 3 13814 13587;13696;13814 149.99 0 1 726300000 20303 10298 13870 14127 23976;23977;23978 23978 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8522644042969 3 373.852489 1118.53564 0.61885 0.00023136 -0.53815 -0.00020119 0.080701 3.017E-05 373.8522422041923 25.001 0.57688 22.118 21.778 22.355 -2.8831 155 49 4 0 0 0 0.092434 2 13588 13588;13697 33.445 0 1 155050000 20304 10298 13870 14127 23979;23980 23979 -0.01888936913087491 HPLSDHEATL 10 Unmodified _HPLSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MSMS AL20221201_MKP_PDAC_01 4 560.2762451171875 2 560.275095 1118.53564 NaN NaN NaN NaN NaN NaN NaN 26.377 1 23.426 22.926 23.926 -2.9511 0 0 0 0.21708 1 14533 14533 41.84 0 1 20305 10298 13870 14127 23981 23981 -0.01888936913087491 HPLSECEFQEY 11 Carbamidomethyl (C) _HPLSEC(Carbamidomethyl (C))EFQEY_ HPLSEC(1)EFQEY HPLSEC(93)EFQEY 0 1 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 719.8001708984375 2 719.800817 1437.58708 NaN NaN NaN NaN NaN NaN NaN 47.049 1 41.969 41.469 42.469 -5.0805 0 0 0 5.9642E-07 1 29159 29159 92.653 67.662 1 20306 10766 13871 14128 23982 23982 952 -0.11420981001379005 HPLSISIFHY 10 Unmodified _HPLSISIFHY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.321533203125 2 607.321848 1212.62914 0.47958 0.00029126 -0.58619 -0.000356 -0.10661 -6.4744E-05 607.3216169271358 63.273 0.32984 63.252 63.049 63.379 -0.021614 42 16 3 0 0 0 0.0022709 1 34569 34569 115.69 92.956 1 14557000 20307 7813 13872 14129 23983 23983 0.03133407260020249 HPLSISIFHY 10 Unmodified _HPLSISIFHY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3226928710938 2 607.321848 1212.62914 0.86225 0.00052366 -1.9224 -0.0011675 -1.0601 -0.00064385 607.3208234141352 89.574 0.50531 83.398 83.165 83.67 -6.1757 43 27 2 0 0 0 0.00019901 2 59209 59085;59209 123.45 96.33 1 12753000 20308 7813 13872 14129 23984;23985 23985 0.03133407260020249 HPLSLTSDQY 10 Unmodified _HPLSLTSDQY_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7837524414062 2 580.782753 1159.55095 0.55435 0.00032195 0.67824 0.00039391 1.2326 0.00071587 580.7831169029741 38.58 0.51484 38.58 38.414 38.929 0 77 24 5 0 0 0 0.017277 1 20648 20648 78.149 34.291 1 25626000 20309 3947 13873 14130 23986 23986 -0.022440701158984666 HPLSLTSDQY 10 Unmodified _HPLSLTSDQY_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.782958984375 2 580.782753 1159.55095 -0.015919 -9.2454E-06 -0.34526 -0.00020052 -0.36118 -0.00020977 580.7824030172791 38.987 0.40611 38.7 38.454 38.861 -0.28687 40 17 3 0 0 0 0.017277 2 20511 20511;20631 78.149 40.175 1 10654000 20310 3947 13873 14130 23987;23988 23987 -0.022440701158984666 HPLSLTSDQY 10 Unmodified _HPLSLTSDQY_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7828979492188 2 580.782753 1159.55095 0.56134 0.00032602 -0.29059 -0.00016877 0.27075 0.00015725 580.7825082717535 44.299 0.52906 39.447 39.172 39.701 -4.852 96 37 3 0 0 0 0.0020965 4 27150 26865;26882;27015;27150 108 55.729 1 122240000 20311 3947 13873 14130 23989;23990;23991;23992 23992 -0.022440701158984666 HPLSNPAEL 9 Unmodified _HPLSNPAEL_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2557373046875 2 489.256174 976.497795 -0.40247 -0.00019691 0.24161 0.00011821 -0.16087 -7.8705E-05 489.2562779493582 34.978 0.51265 34.978 34.714 35.227 0 79 26 4 0 0 0 0.013323 2 18376 18376;18485 71.134 28.123 1 49508000 20312 947 13874 14131 23993;23994 23993 0.00860596892096055 HPLSNPAEL 9 Unmodified _HPLSNPAEL_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2564697265625 2 489.256174 976.497795 -0.1843 -9.017E-05 0.42728 0.00020905 0.24298 0.00011888 489.25628248248154 35.131 0.33261 34.909 34.691 35.023 -0.2224 39 14 4 0 0 0 0.03568 1 18400 18400 52.268 12.311 1 2305800 20313 947 13874 14131 23995 23995 0.00860596892096055 HPLSNPAEL 9 Unmodified _HPLSNPAEL_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2568969726562 2 489.256174 976.497795 0.23131 0.00011317 1.0801 0.00052846 1.3114 0.00064163 489.2568011330901 39.935 0.52379 35.406 35.171 35.695 -4.5294 95 43 3 0 0 0 0.011968 2 23790 23790;23932 74.929 26.583 1 105570000 20314 947 13874 14131 23996;23997 23996 0.00860596892096055 HPLSNQVVVY 10 Unmodified _HPLSNQVVVY_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.311279296875 2 578.31148 1154.60841 -0.023272 -1.3459E-05 0.075592 4.3716E-05 0.052319 3.0257E-05 578.3113959198595 41.39 0.26855 41.087 40.946 41.214 -0.30304 22 12 2 0 0 0 0.033218 1 21928 21928 66.457 47.2 1 4758700 20315 5680 13875 14132 23998 23998 0.03728816880334307 HPLSNQVVVY 10 Unmodified _HPLSNQVVVY_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;nc|ENSG00000145246|Q9P241-2|ATP10D ENSG00000145246|ENST00000273859|ATP10D ENSG00000145246|ENST00000273859|ATP10D MSMS AL20221201_MKP_PDAC_01 4 578.3107299804688 2 578.31148 1154.60841 NaN NaN NaN NaN NaN NaN NaN 46.561 1 41.48 40.98 41.98 -5.0805 0 0 0 0.42631 1 28794 28794 29.841 5.82 1 20316 5680 13875 14132 23999 23999 0.03728816880334307 HPLSTAVTL 9 Unmodified _HPLSTAVTL_ 0 0 0 REV__ENST00000493026.2_1_17:30804487-30806484:+|nuORF REV__ENST00000493026.2_1_17:30804487-30806484:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7694091796875 2 469.768917 937.523281 0.39495 0.00018553 -1.2137 -0.00057017 -0.81878 -0.00038464 469.76913476333704 46.408 0.36794 41.327 41.1 41.468 -5.0805 87 30 4 0 0 0 0.013472 2 28677 28532;28677 70.716 3.3717 1 267660000 + 20317 27914 13876 14133 24000;24001 24001 0.052020714145328384 HPLSVLGINY 10 Unmodified _HPLSVLGINY_ 0 0 0 nc|ENSG00000176396|Q8N6I1-2|EID2;ENSG00000176396|ENST00000390658|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8096923828125 2 556.808574 1111.60259 0.77194 0.00042982 1.0049 0.00055953 1.7768 0.00098935 556.809605673161 67.682 0.31538 67.2 67.031 67.346 -0.48218 28 13 3 0 0 0 0.024351 1 36974 36974 96.285 58.311 1 3547900 20318 8589 13877 14134 24002 24002 0.051257183686630015 HPLSVLGINY 10 Unmodified _HPLSVLGINY_ 0 0 0 nc|ENSG00000176396|Q8N6I1-2|EID2;ENSG00000176396|ENST00000390658|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.809814453125 2 556.808574 1111.60259 0.75242 0.00041895 0.37916 0.00021112 1.1316 0.00063007 556.8088125781244 67.151 0.51299 67.169 66.961 67.474 0.018028 85 25 4 0 0 0 0.0086576 2 36801 36801;36904 108 70.023 1 128990000 20319 8589 13877 14134 24003;24004 24003 0.051257183686630015 HPLSVLGINY 10 Unmodified _HPLSVLGINY_ 0 0 0 nc|ENSG00000176396|Q8N6I1-2|EID2;ENSG00000176396|ENST00000390658|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 nc|ENSG00000176396|Q8N6I1-2|EID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8092041015625 2 556.808574 1111.60259 0.92323 0.00051406 0.14563 8.109E-05 1.0689 0.00059515 556.8086834394467 80.555 2.5373 74.379 73.642 76.179 -6.1757 287 135 3 0 0 0 0.0086576 9 53351 52626;52755;52871;52985;53108;53228;53351;53484;53625 108 70.023 1 96955000 20320 8589 13877 14134 24005;24006;24007;24008;24009;24010;24011;24012;24013 24011 0.051257183686630015 HPLSWGRIL 9 Unmodified _HPLSWGRIL_ 0 0 0 nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 nc|ENSG00000156471|P48651-3|PTDSS1 MSMS AL20221201_MKP_PDAC_01 4 360.2104797363281 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 46.141 1 41.186 40.686 41.686 -4.9549 0 0 0 0.3092 1 28450 28450 17.113 1.8644 1 20321 16294 13878 14135 24014 24014 0.07264861671001199 HPLTGEIVVY 10 Unmodified _HPLTGEIVVY_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3080444335938 2 564.308406 1126.60226 NaN NaN NaN NaN NaN NaN NaN 52.954 1 52.954 52.454 53.454 0 0 0 0 0.049482 1 29325 29325 57.471 19.497 1 20322 3365 13879 14136 24015 24015 0.04402298648801661 HPLTGEIVVY 10 Unmodified _HPLTGEIVVY_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3106689453125 2 564.308406 1126.60226 0.60598 0.00034196 0.78868 0.00044506 1.3947 0.00078702 564.3086256593231 53.46 0.32572 53.008 52.841 53.167 -0.45173 44 15 4 0 0 0 0.037795 2 28876 28876;28977 64.236 37.353 1 10799000 20323 3365 13879 14136 24016;24017 24016 0.04402298648801661 HPLTGEIVVY 10 Unmodified _HPLTGEIVVY_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3087158203125 2 564.308406 1126.60226 1.0481 0.00059144 -0.0079451 -4.4835E-06 1.0401 0.00058696 564.3079766672693 59.663 0.32786 53.548 53.337 53.665 -6.1147 40 17 3 0 0 0 0.013474 1 38259 38259 81.613 41.656 1 37522000 20324 3365 13879 14136 24018 24018 0.04402298648801661 HPLTMIMLF 9 2 Oxidation (M) _HPLTM(Oxidation (M))IM(Oxidation (M))LF_ HPLTM(1)IM(1)LF HPLTM(60)IM(60)LF 0 0 2 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.7877197265625 2 567.787938 1133.56132 1.0276 0.00058344 -1.6598 -0.00094239 -0.63219 -0.00035895 567.78664819806 70.51 0.93376 70.545 70.193 71.127 0.035507 111 43 4 0 0 0 0.023164 2 38719 38719;38910 60.39 38.643 1 4586500 20325 6085 13880 14137 24019;24020 24019 1080;1081 -0.00011501986682560528 HPLTPLITY 9 Unmodified _HPLTPLITY_ 0 0 0 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000138795|Q9UJU2-4|LEF1;LEF1|p.A150V|1|0.18|ENSG00000138795|chr4:108089223-108089223|G/A|missense_variant;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-3|LEF1;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000138795|Q9UJU2-2|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 nc|ENSG00000138795|Q9UJU2-6|LEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8013916015625 2 527.800217 1053.58588 0.2315 0.00012219 -0.15499 -8.1802E-05 0.076519 4.0386E-05 527.8001025405518 59.687 0.38585 59.196 58.987 59.372 -0.49079 65 18 5 0 0 0 0.013472 2 32404 32404;32506 70.716 23.351 1 43658000 20326 16227;5962;6177 13881 14138 24021;24022 24021 0.06123217482718246 HPLTPLITY 9 Unmodified _HPLTPLITY_ 0 0 0 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000138795|Q9UJU2-4|LEF1;LEF1|p.A150V|1|0.18|ENSG00000138795|chr4:108089223-108089223|G/A|missense_variant;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-3|LEF1;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000138795|Q9UJU2-2|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 nc|ENSG00000138795|Q9UJU2-6|LEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.80078125 2 527.800217 1053.58588 0.30172 0.00015925 -0.47772 -0.00025214 -0.176 -9.2893E-05 527.7998618510325 59.33 0.4476 59.277 59.051 59.499 -0.053062 69 22 4 0 0 0 0.0086179 2 32261 32261;32369 89.427 15.004 1 67551000 20327 16227;5962;6177 13881 14138 24023;24024 24023 0.06123217482718246 HPLTPLITY 9 Unmodified _HPLTPLITY_ 0 0 0 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000138795|Q9UJU2-4|LEF1;LEF1|p.A150V|1|0.18|ENSG00000138795|chr4:108089223-108089223|G/A|missense_variant;nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-3|LEF1;nc|ENSG00000138795|Q9UJU2-7|LEF1;nc|ENSG00000138795|Q9UJU2-2|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000138795|Q9UJU2-6|LEF1;ENSG00000152284|ENST00000282111|TCF7L1 nc|ENSG00000138795|Q9UJU2-6|LEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7996826171875 2 527.800217 1053.58588 0.29033 0.00015324 -1.8905 -0.00099783 -1.6002 -0.00084459 527.7989931457219 65.518 0.98673 59.342 59.11 60.096 -6.1757 144 57 4 0 0 0 0.0086179 5 42884 42455;42583;42735;42884;43027 89.427 15.942 1 184350000 20328 16227;5962;6177 13881 14138 24025;24026;24027;24028;24029 24028 0.06123217482718246 HPLTQSAVM 9 Oxidation (M) _HPLTQSAVM(Oxidation (M))_ HPLTQSAVM(1) HPLTQSAVM(44) 0 0 1 nc|ENSG00000178927|Q9BQA9-2|CYBC1;ENSG00000178927|ENST00000306645|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2478637695312 2 500.250034 998.485516 -0.17605 -8.8067E-05 -1.2872 -0.00064394 -1.4633 -0.00073201 500.2492297689009 19.656 0.4087 19.656 19.466 19.874 0 137 58 3 0 0 0 0.05447 1 9874 9874 43.858 11.553 1 2987400 20329 8784 13882 14139 24030 24030 1480 -0.01378762842591641 HPLTQSAVM 9 Oxidation (M) _HPLTQSAVM(Oxidation (M))_ HPLTQSAVM(1) HPLTQSAVM(68) 0 0 1 nc|ENSG00000178927|Q9BQA9-2|CYBC1;ENSG00000178927|ENST00000306645|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2506713867188 2 500.250034 998.485516 0.71751 0.00035893 -0.26435 -0.00013224 0.45316 0.00022669 500.2501478509627 22.397 0.54175 19.619 19.33 19.872 -2.7784 83 29 4 0 0 0 0.015445 2 12048 11944;12048 68.081 22.06 1 14953000 20330 8784 13882 14139 24031;24032 24032 1480 -0.01378762842591641 HPLTQSAVM 9 Unmodified _HPLTQSAVM_ 0 0 0 nc|ENSG00000178927|Q9BQA9-2|CYBC1;ENSG00000178927|ENST00000306645|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 nc|ENSG00000178927|Q9BQA9-2|CYBC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2527160644531 2 492.252577 982.490601 0.93939 0.00046242 0.46493 0.00022886 1.4043 0.00069128 492.25264755434324 34.856 0.48858 30.761 30.503 30.991 -4.0951 87 28 4 0 0 0 0.015445 2 20023 20023;20148 68.081 28.123 1 29133000 20331 8784 13882 14140 24033;24034 24033 -0.0013445897998280998 HPLTRHKFGF 10 Unmodified _HPLTRHKFGF_ 0 0 0 REV__nc|ENSG00000181222|P24928|POLR2A REV__nc|ENSG00000181222|P24928|POLR2A MSMS AL20221201_MKP_PDAC_01 4 413.8975524902344 3 413.896363 1238.66726 NaN NaN NaN NaN NaN NaN NaN 81.281 1 75.105 74.605 75.605 -6.1757 0 0 0 0.92825 1 53344 53344 3.5871 0.26742 1 + 20332 23196 13883 14141 24035 24035 0.05747337965294719 HPLTWVSY 8 Unmodified _HPLTWVSY_ 0 0 0 REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2579650878906 2 501.75581 1001.49707 0.36588 0.00018358 -0.30119 -0.00015112 0.064692 3.246E-05 501.7553874718702 49.454 0.41158 49.061 48.902 49.313 -0.3923 39 20 3 0 0 0 0.40035 1 26565 26565 44.407 6.2558 1 7060500 + 20333 25159 13884 14142 24036 24036 -0.0036219775695371936 HPLTWVSY 8 Unmodified _HPLTWVSY_ 0 0 0 REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7565612792969 2 501.75581 1001.49707 1.0064 0.00050496 0.068331 3.4286E-05 1.0747 0.00053925 501.7559312223381 54.856 0.41996 48.99 48.779 49.199 -5.8653 47 25 2 0 0 0 0.3408 1 34922 34922 50.855 20.63 1 23373000 + 20334 25159 13884 14142 24037 24037 -0.0036219775695371936 HPLTWVSY 8 Unmodified _HPLTWVSY_ 0 0 0 REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.75581 1001.49707 0.36588 0.00018358 -0.30119 -0.00015112 0.064692 3.246E-05 501.7553874718702 49.454 0.41158 49.061 48.902 49.313 -0.3923 0.0098267 -0.00037261 NaN 50.855 39 20 3 NaN NaN NaN NaN 0 NaN NaN 0 7060500 + 20335 25159 13884 14142 -0.0036219775695371936 HPLTWVSY 8 Unmodified _HPLTWVSY_ 0 0 0 REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF REV__ENST00000273610.3_1_3:48599595-48600222:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 501.75581 1001.49707 0.33825 0.00016972 1.4933 0.00074926 1.8315 0.00091898 501.7561011109948 49.147 0.24863 49.103 48.927 49.175 -0.04369 0.051367 0.0014282 NaN 50.855 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 716090 + 20336 25159 13884 14142 -0.0036219775695371936 HPLVSGHIL 9 Unmodified _HPLVSGHIL_ 0 0 0 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.78515625 2 486.784902 971.55525 0.09995 4.8654E-05 -0.17989 -8.7569E-05 -0.079943 -3.8915E-05 486.78490039648847 39.458 0.27885 39.16 39.029 39.308 -0.29716 21 12 2 0 0 0 0.026094 1 20801 20801 57.471 28.985 1 4554300 20337 16516 13885 14143 24038 24038 0.06833483888328828 HPLVSGHIL 9 Unmodified _HPLVSGHIL_ 0 0 0 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7843933105469 2 486.784902 971.55525 0.4358 0.00021214 0.016104 7.839E-06 0.4519 0.00021998 486.78520269092155 39.067 0.21621 39.078 39.001 39.217 0.011452 15 9 2 0 0 0 0.042911 1 20803 20803 48.346 19.859 1 1401700 20338 16516 13885 14143 24039 24039 0.06833483888328828 HPLVSGHIL 9 Unmodified _HPLVSGHIL_ 0 0 0 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 nc|ENSG00000206337|Q6MZN7|HCP5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.1595153808594 2 486.784902 971.55525 0.54971 0.00026759 0.22557 0.0001098 0.77528 0.0003774 486.7847764236899 44.016 0.37661 39.251 39.066 39.443 -4.7648 53 24 3 0 0 0 0.039788 1 26795 26795 57.471 32.797 1 24351000 20339 16516 13885 14143 24040 24040 0.06833483888328828 HPLWFRENWFW 11 Unmodified _HPLWFRENWFW_ 0 0 0 REV__ENSG00000172292|ENST00000305747|CERS6 REV__ENSG00000172292|ENST00000305747|CERS6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3016967773438 3 539.929844 1616.7677 -0.28897 -0.00015602 -4.4873 -0.0024228 -4.7763 -0.0025788 539.927196470267 60.729 0.15978 60.24 60.11 60.269 -0.48932 12 7 2 0 0 0 0.30604 1 33064 33064 0.094841 0.094841 1 3783300 + 20340 22640 13886 14144 24041 24041 -0.01601049771693397 HPLYPFNDPY 10 Unmodified _HPLYPFNDPY_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46034675-46035625:+|nuORF;ENST00000475985.1_1_1:46034769-46035625:+|nuORF;ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.79541015625 2 631.795663 1261.57677 0.44926 0.00028384 -0.8413 -0.00053153 -0.39204 -0.00024769 631.7952171365409 57.084 0.22715 57.084 56.974 57.201 0 14 9 2 0 0 0 0.50944 1 31777 31777 15.847 7.2539 1 612640 20341 3304 13887 14145 24042 24042 -0.04355175873615735 HPLYPFNDPY 10 Unmodified _HPLYPFNDPY_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46034675-46035625:+|nuORF;ENST00000475985.1_1_1:46034769-46035625:+|nuORF;ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7946166992188 2 631.795663 1261.57677 0.10531 6.6531E-05 -0.49402 -0.00031212 -0.38871 -0.00024559 631.7953864121027 57.727 0.34424 57.237 57.046 57.39 -0.48974 40 16 3 0 0 0 0.092434 2 31425 31322;31425 48.346 32.197 1 7119100 20342 3304 13887 14145 24043;24044 24044 -0.04355175873615735 HPLYPFNDPY 10 Unmodified _HPLYPFNDPY_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46034675-46035625:+|nuORF;ENST00000475985.1_1_1:46034769-46035625:+|nuORF;ENST00000473038.5_1_1:46033610-46035625:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7958984375 2 631.795663 1261.57677 0.81354 0.00051399 0.2913 0.00018404 1.1048 0.00069804 632.2968791280343 63.499 0.5554 57.323 57.13 57.686 -6.1757 76 31 3 0 0 0 0.11755 1 40987 40987 43.858 29.02 1 32020000 20343 3304 13887 14145 24045 24045 -0.04355175873615735 HPLYTPPTY 9 Unmodified _HPLYTPPTY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593637.5_1_19:14674952-14675852:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7734985351562 2 544.7742 1087.53385 NaN NaN NaN NaN NaN NaN NaN 41.998 1 41.998 41.498 42.498 0 0 0 0 0.086291 1 22707 22707 46.921 27.482 1 20344 1707 13888 14146 24046 24046 -0.00641945931056398 HPLYTPPTY 9 Unmodified _HPLYTPPTY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593637.5_1_19:14674952-14675852:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7738647460938 2 544.7742 1087.53385 NaN NaN NaN NaN NaN NaN NaN 42.271 1 41.964 41.464 42.464 -0.30682 0 0 0 0.0057909 1 22446 22446 101.72 47.889 1 20345 1707 13888 14146 24047 24047 -0.00641945931056398 HPLYTPPTY 9 Unmodified _HPLYTPPTY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593637.5_1_19:14674952-14675852:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7750244140625 2 544.7742 1087.53385 1.4189 0.00077296 -0.27666 -0.00015072 1.1422 0.00062224 544.7740661081168 47.759 0.54951 42.525 42.243 42.793 -5.2339 56 32 2 0 0 0 0.0086629 3 29558 29558;29693;29827 101.72 63.748 1 88938000 20346 1707 13888 14146 24048;24049;24050 24048 -0.00641945931056398 HPMACTHVL 9 Carbamidomethyl (C),Oxidation (M) _HPM(Oxidation (M))AC(Carbamidomethyl (C))THVL_ HPMAC(1)THVL HPM(1)ACTHVL HPMAC(42)THVL HPM(42)ACTHVL 0 1 1 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2486572265625 2 541.249511 1080.48447 -0.012752 -6.9018E-06 -0.22373 -0.00012109 -0.23648 -0.000128 541.7505550414513 23.144 0.13772 20.365 20.25 20.388 -2.7784 12 9 2 0 0 0 0.06187 1 12493 12493 42.095 29.563 1 4398900 20347 7591 13889 14147 24051 24051 732 1295 -0.05255300483167957 HPMAYQLQL 9 Oxidation (M) _HPM(Oxidation (M))AYQLQL_ HPM(1)AYQLQL HPM(54)AYQLQL 0 0 1 ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7793579101562 2 558.778959 1115.54336 1.0256 0.00057308 -0.47331 -0.00026447 0.55229 0.00030861 558.7789578820564 50.076 0.34063 49.684 49.51 49.851 -0.3923 33 16 3 0 0 0 0.03327 1 26955 26955 53.576 53.576 1 17080000 20348 10283 13890 14148 24052 24052 1671 -0.009785009171764614 HPMAYQLQL 9 Oxidation (M) _HPM(Oxidation (M))AYQLQL_ HPM(1)AYQLQL HPM(54)AYQLQL 0 0 1 ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7798461914062 2 558.778959 1115.54336 1.1527 0.00064412 -0.74902 -0.00041854 0.40371 0.00022558 558.7788321904928 54.937 0.51337 49.072 48.799 49.312 -5.8653 67 31 3 0 0 0 0.03327 1 34907 34907 53.576 53.576 1 49861000 20349 10283 13890 14148 24053 24053 1671 -0.009785009171764614 HPMAYQLQL 9 Oxidation (M) _HPM(Oxidation (M))AYQLQL_ 0 0 1 ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.778959 1115.54336 1.0256 0.00057308 -0.47331 -0.00026447 0.55229 0.00030861 558.7789578820564 50.076 0.34063 49.684 49.51 49.851 -0.3923 -0.0030972 -0.00012292 NaN 53.576 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 17080000 20350 10283 13890 14148 1671 -0.009785009171764614 HPMGGLNAM 9 Oxidation (M) _HPMGGLNAM(Oxidation (M))_ HPMGGLNAM(1) HPM(-56)GGLNAM(56) 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2099304199219 2 472.209855 942.405157 0.16936 7.9973E-05 -0.41594 -0.00019641 -0.24658 -0.00011644 472.2100812863628 23.982 0.60025 21.155 20.809 21.41 -2.8273 103 35 4 0 0 0 0.027803 1 12956 12956 56.541 20.497 2 16799000 20351 5989 13891 14149 24054 24054 1070 -0.06834947437300798 HPMGGLNAM 9 Unmodified _HPMGGLNAM_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.212890625 2 464.212398 926.410242 0.91794 0.00042612 -1.5545 -0.00072163 -0.63659 -0.00029551 464.2118151490104 38.149 0.59268 33.78 33.419 34.012 -4.3689 79 35 3 0 0 0 0.040472 2 22390 22390;22514 49.669 21.182 1 50335000 20352 5989 13891 14150 24055;24056 24055 -0.05590643574680598 HPMGIIVDTI 10 Unmodified _HPMGIIVDTI_ 0 0 0 REV__ENST00000465617.1_1_10:12123569-12136179:+|nuORF REV__ENST00000465617.1_1_10:12123569-12136179:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.8470153808594 3 365.867082 1094.57942 NaN NaN NaN NaN NaN NaN NaN 15.203 1 12.675 12.175 13.175 -2.5273 0 0 0 0.91523 1 7779 7779 6.6304 3.3107 1 + 20353 23193 13892 14151 24057 24057 0.03590956259699851 HPMGIYKTL 9 Unmodified _HPMGIYKTL_ 0 0 0 REV__nc|ENSG00000118557|Q8TBY8-4|PMFBP1 REV__nc|ENSG00000118557|Q8TBY8-4|PMFBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7904052734375 2 530.28642 1058.55829 1.2913 0.00068475 0.23922 0.00012685 1.5305 0.0008116 530.2863218301728 41.876 0.93761 37.268 36.833 37.77 -4.6079 160 60 3 0 0 0 0.41742 1 25488 25488 11.64 0 1 92863000 + 20354 19159 13893 14152 24058 24058 0.03134990950820793 HPMGMPGA 8 Unmodified _HPMGMPGA_ 0 0 0 ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1 ENSG00000174292|ENST00000688331|TNK1 ENSG00000174292|ENST00000688331|TNK1 MSMS AL20221201_MKP_PDAC_01 4 399.1739807128906 2 399.175284 796.336015 NaN NaN NaN NaN NaN NaN NaN 12.224 1 9.7416 9.2416 10.242 -2.482 0 0 0 0.97444 1 6175 6175 0.79363 0.10326 1 20355 8409 13894 14153 24059 24059 -0.07029986666202603 HPMGPPPPF 9 Unmodified _HPMGPPPPF_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000520132.1_1_5:150071315-150073858:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.70166015625 2 488.739105 975.463658 0.78594 0.00038412 1.8185 0.00088875 2.6044 0.0012729 488.74004647455075 54.705 0.33009 48.84 48.682 49.012 -5.8653 26 19 2 0 0 0 0.14144 1 34782 34782 28.173 18.099 1 8221700 20356 1439 13895 14154 24060 24060 -0.025055228005157915 HPMGWQMK 8 Unmodified _HPMGWQMK_ 0 0 0 ENST00000609674.1_1_7:143060996-143061092:+|nuORF ENST00000609674.1_1_7:143060996-143061092:+|nuORF ENST00000609674.1_1_7:143060996-143061092:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7360229492188 2 507.73604 1013.45753 NaN NaN NaN NaN NaN NaN NaN 16.857 1 16.857 16.357 17.357 0 0 0 0 0.97444 1 8260 8260 0.79363 0 1 20357 15883 13896 14155 24061 24061 -0.048663643036775284 HPMIYICSYL 10 Unmodified _HPMIYICSYL_ 0 0 0 REV__ENST00000381298.6_1_5:55235198-55235360:-|nuORF REV__ENST00000381298.6_1_5:55235198-55235360:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8689270019531 3 413.868205 1238.58279 0.070281 2.9087E-05 3.2852 0.0013597 3.3555 0.0013887 413.86852161313465 38.99 0.20849 39.002 38.92 39.129 0.011452 15 9 2 0 0 0 0.68719 1 20792 20792 2.086 0 1 1442100 + 20358 26331 13897 14156 24062 24062 -0.02696116957963568 HPMNDPTRTF 10 Oxidation (M) _HPM(Oxidation (M))NDPTRTF_ HPM(1)NDPTRTF HPM(82)NDPTRTF 0 0 1 ENST00000484214.1_1_1:156263748-156265436:-|nuORF;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP ENST00000484214.1_1_1:156263748-156265436:-|nuORF ENST00000484214.1_1_1:156263748-156265436:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2799682617188 2 616.279854 1230.54516 0.10988 6.7714E-05 -0.21424 -0.00013203 -0.10436 -6.4315E-05 616.2798347976495 22.852 0.40671 20.073 19.844 20.25 -2.7784 82 29 3 0 0 0 0.013158 1 12218 12218 81.915 69.675 1 20616000 20359 10129 13898 14157 24063 24063 1648 -0.060894918992289604 HPMNDPTRTF 10 Unmodified _HPMNDPTRTF_ 0 0 0 ENST00000484214.1_1_1:156263748-156265436:-|nuORF;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP ENST00000484214.1_1_1:156263748-156265436:-|nuORF ENST00000484214.1_1_1:156263748-156265436:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.2823486328125 2 608.282397 1214.55024 0.30925 0.00018811 -0.27844 -0.00016937 0.030812 1.8742E-05 608.2824051618483 29.882 0.40142 26.58 26.406 26.807 -3.3016 33 19 2 0 0 0 1.4531999999999998E-21 2 16782 16782;16890 205.91 167.94 1 77579000 20360 10129 13898 14158 24064;24065 24064 -0.04845188036597392 HPMNDPTRTF 10 Unmodified _HPMNDPTRTF_ 0 0 0 ENST00000484214.1_1_1:156263748-156265436:-|nuORF;nc|ENSG00000198715|Q8WWB7-2|GLMP;ENSG00000198715|ENST00000362007|GLMP ENST00000484214.1_1_1:156263748-156265436:-|nuORF ENST00000484214.1_1_1:156263748-156265436:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.8571472167969 3 405.857357 1214.55024 NaN NaN NaN NaN NaN NaN NaN 29.853 1 26.552 26.052 27.052 -3.3016 0 0 0 0.02843 1 16812 16812 62.869 44.529 1 20361 10129 13898 14158 24066 24066 -0.04845188036597392 HPMRAIFMI 9 Unmodified _HPMRAIFMI_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000101109|ENST00000372806|STK4 nc|ENSG00000104375|Q13188-2|STK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2973022460938 2 558.296265 1114.57798 1.1858 0.00066201 0.41699 0.0002328 1.6028 0.00089481 558.2967690319529 95.042 0.22109 88.866 88.767 88.988 -6.1757 26 11 3 0 0 0 0.031062 1 62939 62939 54.774 6.4277 1 19274000 20362 2201;1913 13899 14159 24067 24067 0.025270436899518245 HPMSEYPTY 9 Oxidation (M) _HPM(Oxidation (M))SEYPTY_ HPM(1)SEYPTY HPM(60)SEYPTY 0 0 1 nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941-4|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-8|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-7|MUC1;ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-10|MUC1;nc|ENSG00000185499|P15941-16|MUC1;nc|ENSG00000185499|P15941-9|MUC1;nc|ENSG00000185499|P15941-12|MUC1 nc|ENSG00000185499|P15941-2|MUC1 nc|ENSG00000185499|P15941-2|MUC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7360229492188 2 570.736957 1139.45936 -0.39772 -0.000227 -0.78269 -0.00044671 -1.1804 -0.00067371 570.737218429677 27.518 0.52524 27.518 27.196 27.721 0 50 25 3 0 0 0 0.023164 1 14163 14163 60.39 28.084 1 6451700 20363 9377 13900 14160 24068 24068 1540 -0.10479076804745091 HPMTDEQIF 9 Oxidation (M) _HPM(Oxidation (M))TDEQIF_ HPM(1)TDEQIF HPM(64)TDEQIF 0 0 1 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2533569335938 2 567.250231 1132.48591 0.27169 0.00015412 1.2556 0.00071225 1.5273 0.00086636 567.2506150761623 37.826 0.28901 37.826 37.68 37.969 0 26 13 3 0 0 0 0.019303 1 20150 20150 64.236 30.134 1 3196500 20364 3093 13901 14161 24069 24069 540 -0.07503387913402548 HPMYGNCYTF 10 Carbamidomethyl (C),Oxidation (M) _HPM(Oxidation (M))YGNC(Carbamidomethyl (C))YTF_ HPMYGNC(1)YTF HPM(1)YGNCYTF HPMYGNC(48)YTF HPM(48)YGNCYTF 0 1 1 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.2552490234375 2 653.254991 1304.49543 0.12372 8.082E-05 0.28571 0.00018664 0.40943 0.00026746 653.2555425022042 39.924 0.28955 39.626 39.492 39.782 -0.29716 45 13 4 0 0 0 0.092434 1 21073 21073 48.346 36.105 1 9937600 20365 2778 13902 14162 24070 24070 285 483 -0.14463942899533322 HPMYGNCYTF 10 Carbamidomethyl (C),Oxidation (M) _HPM(Oxidation (M))YGNC(Carbamidomethyl (C))YTF_ HPMYGNC(1)YTF HPM(1)YGNCYTF HPMYGNC(52)YTF HPM(52)YGNCYTF 0 1 1 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.255126953125 2 653.254991 1304.49543 0.46577 0.00030427 -0.28438 -0.00018578 0.18139 0.00011849 653.2550172680701 44.261 0.42552 39.409 39.172 39.597 -4.852 81 30 3 0 0 0 0.074936 1 27018 27018 52.268 37.02 1 42825000 20366 2778 13902 14162 24071 24071 285 483 -0.14463942899533322 HPMYGNCYTF 10 Carbamidomethyl (C),Oxidation (M) _HPM(Oxidation (M))YGNC(Carbamidomethyl (C))YTF_ 0 1 1 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 653.254991 1304.49543 0.63929 0.00041762 1.5748 0.0010287 2.214 0.0014463 653.2551504856974 39.558 0.14566 39.57 39.528 39.674 0.011452 0.0172 0.0019493 NaN 52.268 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 776970 20367 2778 13902 14162 285 483 -0.14463942899533322 HPMYGNCYTF 10 Carbamidomethyl (C) _HPMYGNC(Carbamidomethyl (C))YTF_ HPMYGNC(1)YTF HPMYGNC(71)YTF 0 1 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.2554931640625 2 645.257533 1288.50051 0.94984 0.00061289 -0.32808 -0.0002117 0.62176 0.0004012 645.2575018295869 50.063 0.3975 44.524 44.344 44.741 -5.5391 57 25 3 0 0 0 0.024981 2 31291 31291;31428 71.134 54.021 1 35882000 20368 2778 13902 14163 24072;24073 24072 285 -0.1321963903692449 HPNDDDVHF 9 Unmodified _HPNDDDVHF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8212280273438 3 365.821189 1094.44174 -0.47941 -0.00017538 -0.96488 -0.00035297 -1.4443 -0.00052835 365.8210495009823 25.839 0.20707 25.839 25.779 25.986 0 13 9 2 0 0 0 0.14602 1 13312 13312 20.415 18.822 1 373520 20369 3021 13903 14164 24074 24074 -0.10170656015384338 HPNDDDVHF 9 Unmodified _HPNDDDVHF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2285766601562 2 548.228145 1094.44174 0.6352 0.00034824 -0.027279 -1.4955E-05 0.60792 0.00033328 548.228178168385 28.499 0.61106 25.351 25.022 25.633 -3.1482 102 31 4 0 0 0 0.0086209 3 15907 15778;15907;16034 89.401 74.819 1 152160000 20370 3021 13903 14164 24075;24076;24077 24076 -0.10170656015384338 HPNDDDVHF 9 Unmodified _HPNDDDVHF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8215026855469 3 365.821189 1094.44174 1.3504 0.00049402 0.12877 4.7106E-05 1.4792 0.00054113 365.8211898133262 28.563 0.39671 25.415 25.177 25.573 -3.1482 34 20 2 0 0 0 0.012148 1 15873 15873 57.722 42.765 1 8133800 20371 3021 13903 14164 24078 24078 -0.10170656015384338 HPNEGALVL 9 Unmodified _HPNEGALVL_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2587890625 2 475.258717 948.50288 0.07 3.3268E-05 -0.044875 -2.1327E-05 0.025126 1.1941E-05 475.25866350480857 44.113 0.30361 44.113 43.961 44.265 0 34 16 3 0 0 0 0.020973 2 23933 23933;24031 62.573 14.227 1 41879000 20372 16395 13904 14165 24079;24080 24079 0.026569007546981993 HPNEGALVL 9 Unmodified _HPNEGALVL_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2596740722656 2 475.258717 948.50288 0.98864 0.00046986 0.51576 0.00024512 1.5044 0.00071498 475.2591050296226 48.582 0.46616 43.186 42.925 43.391 -5.3961 65 27 3 0 0 0 0.044011 2 30249 30249;30378 47.749 13.561 1 63219000 20373 16395 13904 14165 24081;24082 24081 0.026569007546981993 HPNFLHLNF 9 Unmodified _HPNFLHLNF_ 0 0 0 REV__ENST00000560518.1_1_15:52472905-52473223:+|nuORF REV__ENST00000560518.1_1_15:52472905-52473223:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7911987304688 2 569.793258 1137.57196 NaN NaN NaN NaN NaN NaN NaN 65.354 1 65.354 64.854 65.854 7.6294E-06 0 0 0 0.36554 1 35822 35822 21.747 9.2151 1 + 20374 28828 13905 14166 24083 24083 0.008679847742769198 HPNFRLIVI 9 Unmodified _HPNFRLIVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8375854492188 2 554.834926 1107.6553 1.0949 0.00060748 2.0675 0.0011471 3.1624 0.0017546 554.8359113448664 95.05 0.30838 88.875 88.748 89.056 -6.1757 22 16 2 0 0 0 0.070838 1 62957 62957 39.957 15.937 1 8268500 20375 8367 13906 14167 24084 24084 0.10577721222125547 HPNGLQVMY 9 Oxidation (M) _HPNGLQVM(Oxidation (M))Y_ HPNGLQVM(1)Y HPNGLQVM(51)Y 0 0 1 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.755615234375 2 537.755484 1073.49641 0.29522 0.00015876 0.24655 0.00013258 0.54177 0.00029134 537.7556994921584 40.316 0.47675 35.787 35.558 36.035 -4.5294 86 35 3 0 0 0 0.038285 2 23951 23951;24084 50.855 14.811 1 44849000 20376 4740 13907 14168 24085;24086 24085 860 -0.037393604683074955 HPNGLQVMY 9 Unmodified _HPNGLQVMY_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000494371.5_1_1:230807261-230814859:+|nuORF nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.75830078125 2 529.758027 1057.5015 0.72779 0.00038555 0.20911 0.00011078 0.9369 0.00049633 529.757977945541 49.204 0.3575 43.808 43.648 44.005 -5.3961 42 23 2 0 0 0 0.095405 1 30675 30675 34.102 5.6156 1 46898000 20377 4740 13907 14169 24087 24087 -0.024950566056986645 HPNIITLKDVY 11 Unmodified _HPNIITLKDVY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3690795898438 2 656.86662 1311.71869 0.61969 0.00040706 0.82783 0.00054378 1.4475 0.00095083 656.8672363593303 52.234 0.3112 51.801 51.631 51.942 -0.43367 40 15 4 0 0 0 0.07101 1 28175 28175 62.869 50.628 1 4931700 20378 3330;8664;1054 13908 14170 24088 24088 0.07529617148725265 HPNIITLKDVY 11 Unmodified _HPNIITLKDVY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5810852050781 3 438.246839 1311.71869 0.55667 0.00024396 0.24283 0.00010642 0.7995 0.00035038 438.2469502682899 52.249 0.31338 51.815 51.612 51.925 -0.43367 34 15 3 0 0 0 0.61596 1 28192 28192 10.527 6.4108 1 2857100 20379 3330;8664;1054 13908 14170 24089 24089 0.07529617148725265 HPNIITLKDVY 11 Unmodified _HPNIITLKDVY_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;nc|ENSG00000071242|Q15349-2|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000071242|ENST00000265678|RPS6KA2 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2469787597656 3 438.246839 1311.71869 0.44621 0.00019555 1.4909 0.00065337 1.9371 0.00084891 438.2474372400481 51.859 0.28732 51.8 51.651 51.939 -0.058918 25 13 3 0 0 0 0.65706 1 28100 28100 8.2864 4.1698 1 1621100 20380 3330;8664;1054 13908 14170 24090 24090 0.07529617148725265 HPNIQNHCHY 10 Carbamidomethyl (C) _HPNIQNHC(Carbamidomethyl (C))HY_ HPNIQNHC(1)HY HPNIQNHC(62)HY 0 1 0 nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.8621520996094 3 440.528122 1318.56254 0.30071 0.00013247 0.30727 0.00013536 0.60797 0.00026783 440.52834663022037 15.821 0.13302 13.294 13.23 13.363 -2.5273 59 32 2 0 0 0 0.043225 1 8133 8133 61.602 57.412 1 3483200 20381 7785 13909 14171 24091 24091 757 -0.08400151573550829 HPNIVRLIG 9 Unmodified _HPNIVRLIG_ 0 0 0 ENST00000464684.5_1_15:91434747-91438785:+|nuORF;nc|ENSG00000182511|P07332-2|FES;nc|ENSG00000182511|P07332-4|FES;nc|ENSG00000182511|P07332-3|FES;ENSG00000182511|ENST00000328850|FES ENST00000464684.5_1_15:91434747-91438785:+|nuORF ENST00000464684.5_1_15:91434747-91438785:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8113403320312 2 509.811451 1017.60835 0.28418 0.00014488 0.36046 0.00018376 0.64463 0.00032864 509.8116289939903 34.894 0.30573 34.921 34.796 35.102 0.027401 37 13 4 0 0 0 0.55144 1 18507 18507 4.3292 0 1 12501000 20382 9061 13910 14172 24092 24092 0.10024861671001872 HPNIVSLQDVL 11 Unmodified _HPNIVSLQDVL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.8436889648438 2 617.843145 1233.67174 0.70352 0.00043466 1.5335 0.00094744 2.237 0.0013821 617.8443595750198 72.419 0.2887 71.943 71.813 72.102 -0.47609 29 13 3 0 0 0 0.2736 1 39681 39681 41.956 17.935 1 2300600 20383 7969 13911 14173 24093 24093 0.06424757597551434 HPNIVSLQDVL 11 Unmodified _HPNIVSLQDVL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1;nc|ENSG00000170312|P06493-2|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8432006835938 2 617.843145 1233.67174 0.72736 0.0004494 0.87956 0.00054343 1.6069 0.00099283 617.8432559368649 90.036 0.50407 83.86 83.651 84.156 -6.1757 48 28 2 0 0 0 0.028917 1 59463 59463 51.415 27.625 1 14770000 20384 7969 13911 14173 24094 24094 0.06424757597551434 HPNKPKDHVF 10 Unmodified _HPNKPKDHVF_ 0 0 0 nc|ENSG00000206053|Q9H910-2|JPT2;ENSG00000206053|ENST00000248098|JPT2;nc|ENSG00000206053|Q9H910-3|JPT2 nc|ENSG00000206053|Q9H910-2|JPT2 nc|ENSG00000206053|Q9H910-2|JPT2 MSMS AL20221201_MKP_PDAC_01 4 407.2186889648438 3 406.884123 1217.63054 NaN NaN NaN NaN NaN NaN NaN 15.341 1 12.814 12.314 13.314 -2.5273 0 0 0 0.8671 1 7863 7863 12.175 6.4429 1 20385 10391 13912 14174 24095 24095 0.030430413487238184 HPNLTSMTF 9 Unmodified _HPNLTSMTF_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MSMS AL20221201_MKP_PDAC_01 4 524.2509155273438 2 524.250034 1046.48552 NaN NaN NaN NaN NaN NaN NaN 58.058 1 52.031 51.531 52.531 -6.0275 0 0 0 0.20153 1 37180 37180 30.637 2.1497 1 20386 2967 13913 14175 24096 24096 -0.03586762842610369 HPNLVVGGTY 10 Unmodified _HPNLVVGGTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7776489257812 2 528.777274 1055.53999 NaN NaN NaN NaN NaN NaN NaN 40.581 1 40.581 40.081 41.081 0 0 0 0 0.28083 1 21824 21824 38.176 16.429 1 20387 1216;6597 13914 14176 24097 24097 0.014445723004882893 HPNLVVGGTY 10 Unmodified _HPNLVVGGTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7777709960938 2 528.777274 1055.53999 0.15921 8.4187E-05 0.66814 0.0003533 0.82735 0.00043748 528.7784381923746 41.104 0.28743 40.801 40.622 40.909 -0.30304 42 13 5 0 0 0 0.027759 1 21706 21706 69.105 36.799 1 39914000 20388 1216;6597 13914 14176 24098 24098 0.014445723004882893 HPNLVVGGTY 10 Unmodified _HPNLVVGGTY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF;nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000158560|O14576-4|DYNC1I1 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 528.777274 1055.53999 0.3897 0.00020607 2.1352 0.001129 2.5249 0.0013351 528.7793287390032 40.78 0.1217 40.778 40.689 40.81 -0.0017891 -0.011562 0.00065836 NaN 69.105 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1403100 20389 1216;6597 13914 14176 0.014445723004882893 HPNNVVSIKY 10 Unmodified _HPNNVVSIKY_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8163452148438 2 585.81693 1169.61931 -0.32078 -0.00018792 0.59411 0.00034804 0.27332 0.00016012 585.8168499275876 32.621 0.13861 32.491 32.437 32.576 -0.12915 8 5 2 0 0 0 0.34249 1 17017 17017 24.991 3.454 1 1560800 20390 3261 13915 14177 24099 24099 0.04128219254607757 HPNNVVSIKY 10 Unmodified _HPNNVVSIKY_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MSMS AL20221201_MKP_PDAC_01 4 585.8158569335938 2 585.81693 1169.61931 NaN NaN NaN NaN NaN NaN NaN 36.305 1 32.113 31.613 32.613 -4.1928 0 0 0 0.098035 1 21187 21187 51.415 13.24 1 20391 3261 13915 14177 24100 24100 0.04128219254607757 HPNNVVSVKY 10 Unmodified _HPNNVVSVKY_ 0 0 0 ENST00000547733.1_1_12:39688228-39705384:-|nuORF;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A ENST00000547733.1_1_12:39688228-39705384:-|nuORF ENST00000547733.1_1_12:39688228-39705384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.8089599609375 2 578.809105 1155.60366 -0.43386 -0.00025112 -0.42322 -0.00024497 -0.85708 -0.00049609 578.8089025287575 27.282 0.20278 27.282 27.174 27.377 0 22 9 3 0 0 0 0.012412 1 14036 14036 76.825 22.992 1 6951600 20392 5123 13916 14178 24101 24101 0.03207932737564079 HPNNVVSVKY 10 Unmodified _HPNNVVSVKY_ 0 0 0 ENST00000547733.1_1_12:39688228-39705384:-|nuORF;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A ENST00000547733.1_1_12:39688228-39705384:-|nuORF ENST00000547733.1_1_12:39688228-39705384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8081665039062 2 578.809105 1155.60366 0.51463 0.00029787 0.23871 0.00013817 0.75334 0.00043604 578.8089843830305 27.235 0.11755 27.189 27.107 27.225 -0.046408 8 5 2 0 0 0 0.025682 1 14024 14024 63.227 17.528 1 8098300 20393 5123 13916 14178 24102 24102 0.03207932737564079 HPNNVVSVKY 10 Unmodified _HPNNVVSVKY_ 0 0 0 ENST00000547733.1_1_12:39688228-39705384:-|nuORF;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A ENST00000547733.1_1_12:39688228-39705384:-|nuORF ENST00000547733.1_1_12:39688228-39705384:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8095703125 2 578.809105 1155.60366 0.9842 0.00056967 -0.25444 -0.00014727 0.72976 0.00042239 578.8092779033291 30.374 0.39253 26.877 26.678 27.07 -3.497 52 19 4 0 0 0 0.017314 2 17067 17067;17187 97.741 48.187 1 69305000 20394 5123 13916 14178 24103;24104 24103 0.03207932737564079 HPNNVVSVKY 10 Unmodified _HPNNVVSVKY_ 0 0 0 ENST00000547733.1_1_12:39688228-39705384:-|nuORF;nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A ENST00000547733.1_1_12:39688228-39705384:-|nuORF ENST00000547733.1_1_12:39688228-39705384:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2093811035156 3 386.208495 1155.60366 1.3524 0.00052232 0.69398 0.00026802 2.0464 0.00079035 386.2087949362341 30.376 0.31086 26.879 26.718 27.029 -3.497 24 15 2 0 0 0 0.30673 1 17119 17119 27.088 12.87 1 9607800 20395 5123 13916 14178 24105 24105 0.03207932737564079 HPNPGSFPEF 10 Unmodified _HPNPGSFPEF_ 0 0 0 ENST00000504002.1_1_4:70715089-70723308:-|nuORF;ENSG00000109193|ENST00000226444|SULT1E1 ENST00000504002.1_1_4:70715089-70723308:-|nuORF ENST00000504002.1_1_4:70715089-70723308:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8072509765625 2 564.759081 1127.50361 0.55919 0.00031581 -0.717 -0.00040493 -0.15781 -8.9126E-05 564.7580694982933 53.268 0.096775 52.816 52.762 52.859 -0.45173 6 4 2 0 0 0 0.23325 1 28807 28807 10.074 1.4806 1 675150 20396 2641 13917 14179 24106 24106 -0.055043045962293036 HPNPGSITHL 10 Unmodified _HPNPGSITHL_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7824096679688 2 536.780348 1071.54614 0.57568 0.00030901 0.95105 0.00051051 1.5267 0.00081952 536.7811741845921 29.996 0.18402 29.916 29.815 29.999 -0.080431 12 6 2 0 0 0 0.32072 1 15569 15569 26.268 5.8145 1 1460500 20397 9279 13918 14180 24107 24107 0.01323090531991511 HPNPIPSGL 9 Unmodified _HPNPIPSGL_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.25244140625 2 466.253434 930.492316 0.9631 0.00044905 -3.6771 -0.0017145 -2.714 -0.0012654 466.2516606163112 42.423 0.2262 42.423 42.339 42.565 0 16 10 2 0 0 0 0.095405 1 22997 22997 34.102 12.356 1 1497900 20398 16057 13919 14181 24108 24108 0.024289181002814075 HPNPIPSGL 9 Unmodified _HPNPIPSGL_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.25390625 2 466.253434 930.492316 1.2644 0.00058952 -0.060095 -2.802E-05 1.2043 0.0005615 466.2531381040706 47.428 0.32784 42.194 42.043 42.371 -5.2339 31 18 3 0 0 0 0.024882 1 29436 29436 58.679 10.333 1 12499000 20399 16057 13919 14181 24109 24109 0.024289181002814075 HPNPWKESF 9 Unmodified _HPNPWKESF_ 0 0 0 nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7772827148438 2 571.274898 1140.53524 0.97097 0.00055469 3.0062 0.0017174 3.9772 0.0022721 571.7790290963588 39.125 0.41658 34.675 34.459 34.876 -4.4509 42 26 2 0 0 0 0.012228 1 23108 23108 74.2 36.226 1 12921000 20400 5014 13920 14182 24110 24110 -0.029403118423033447 HPNQEDHE 8 Unmodified _HPNQEDHE_ 0 0 0 nc|ENSG00000138760|Q14108-2|SCARB2;ENSG00000138760|ENST00000264896|SCARB2 nc|ENSG00000138760|Q14108-2|SCARB2 nc|ENSG00000138760|Q14108-2|SCARB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1005.229919433594 1 1005.40206 1004.39479 0.46176 0.00046425 0.024017 2.4147E-05 0.48578 0.0004884 1005.4035972521524 28.708 0.23237 28.738 28.544 28.776 0.029564 11 8 2 0 0 0 8.7369 1 14904 14904 2.8892 0 1 3182300 20401 5101 13921 14183 24111 24111 -0.10723515566519382 HPNQYEED 8 Unmodified _HPNQYEED_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1031.073364257812 1 1031.40648 1030.3992 0.35728 0.0003685 -1.081 -0.001115 -0.72377 -0.0007465 1031.4053947154096 29.686 0.21405 29.716 29.653 29.868 0.030104 10 8 2 0 0 0 8.7369 1 15484 15484 0.79363 0 1 1765000 + 20402 17416 13922 14184 24112 24112 -0.11478051143603807 HPNRRSGR 8 Unmodified _HPNRRSGR_ 0 0 0 REV__ENSG00000114127|ENST00000392981|XRN1 REV__ENSG00000114127|ENST00000392981|XRN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2688293457031 2 490.268273 978.521993 NaN NaN NaN NaN NaN NaN NaN 20.647 1 20.647 20.147 21.147 0 0 0 0 0.97444 1 10400 10400 4.3292 0 1 + 20403 18904 13923 14185 24113 24113 0.031872948889940744 HPNSAIILHY 10 Unmodified _HPNSAIILHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8129272460938 2 582.811648 1163.60874 -0.29383 -0.00017125 0.22098 0.00012879 -0.072847 -4.2456E-05 582.8118560997041 41.556 0.28404 41.253 41.112 41.396 -0.30304 32 12 4 0 0 0 0.0062184 1 22000 22000 89.401 53.274 1 47699000 20404 3829;16172 13924 14186 24114 24114 0.03348236600186283 HPNSAIILHY 10 Unmodified _HPNSAIILHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.313232421875 2 582.811648 1163.60874 0.53256 0.00031038 -0.21789 -0.00012699 0.31466 0.00018339 582.8114080524921 45.516 0.58747 40.561 40.32 40.908 -4.9549 96 39 3 0 0 0 0.0030316 1 27823 27823 110.67 66.902 1 122730000 20405 3829;16172 13924 14186 24115 24115 0.03348236600186283 HPNSAIILHY 10 Unmodified _HPNSAIILHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.811648 1163.60874 0.48353 0.00028181 0.59541 0.00034701 1.0789 0.00062882 583.3136505977118 41.253 0.20044 41.251 41.159 41.359 -0.0017929 -0.00078507 0.00031095 NaN 89.401 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2666500 20406 3829;16172 13924 14186 0.03348236600186283 HPNSCNTFVY 10 Carbamidomethyl (C) _HPNSC(Carbamidomethyl (C))NTFVY_ HPNSC(1)NTFVY HPNSC(62)NTFVY 0 1 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26218621-26220417:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7664794921875 2 619.76658 1237.51861 0.43021 0.00026663 -0.63323 -0.00039245 -0.20302 -0.00012582 619.7664133420258 36.032 0.23458 36.032 35.896 36.131 0 28 11 3 0 0 0 0.043225 1 19055 19055 61.602 44.489 1 9278800 20407 10558 13925 14187 24116 24116 942 -0.09065180790548766 HPNSCNTFVY 10 Carbamidomethyl (C) _HPNSC(Carbamidomethyl (C))NTFVY_ HPNSC(1)NTFVY HPNSC(58)NTFVY 0 1 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26218621-26220417:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.7665405273438 2 619.76658 1237.51861 -0.46445 -0.00028785 1.3941 0.00086402 0.92966 0.00057617 619.7674547830901 36.222 0.2001 35.972 35.886 36.086 -0.2497 25 8 4 0 0 0 0.051223 1 19002 19002 57.722 41.875 1 3735200 20408 10558 13925 14187 24117 24117 942 -0.09065180790548766 HPNSCNTFVY 10 Carbamidomethyl (C) _HPNSC(Carbamidomethyl (C))NTFVY_ HPNSC(1)NTFVY HPNSC(70)NTFVY 0 1 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26218621-26220417:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.7666625976562 2 619.76658 1237.51861 0.043102 2.6713E-05 0.48849 0.00030275 0.53159 0.00032946 619.7668446098975 40.002 0.38097 35.472 35.247 35.628 -4.5294 62 31 2 0 0 0 0.025861 2 23821 23691;23821 70.332 51.075 1 69852000 20409 10558 13925 14187 24118;24119 24119 942 -0.09065180790548766 HPNSPGIPY 9 Unmodified _HPNSPGIPY_ 0 0 0 nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000425451.2_1_12:48189548-48213588:-|nuORF nc|ENSG00000061273|Q8WUI4-3|HDAC7 nc|ENSG00000061273|Q8WUI4-3|HDAC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2436828613281 2 491.243067 980.47158 -0.31595 -0.00015521 -0.44224 -0.00021725 -0.75819 -0.00037246 491.24314580288905 35.225 0.28881 35.225 35.053 35.342 0 33 14 4 0 0 0 0.10734 1 18569 18569 32.305 5.9642 1 6873600 20410 835 13926 14188 24120 24120 -0.019436722793898298 HPNSPGIPY 9 Unmodified _HPNSPGIPY_ 0 0 0 nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000425451.2_1_12:48189548-48213588:-|nuORF nc|ENSG00000061273|Q8WUI4-3|HDAC7 nc|ENSG00000061273|Q8WUI4-3|HDAC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.241943359375 2 491.243067 980.47158 NaN NaN NaN NaN NaN NaN NaN 35.411 1 35.189 34.689 35.689 -0.2224 0 0 0 0.50124 1 18541 18541 15.847 1.2655 1 20411 835 13926 14188 24121 24121 -0.019436722793898298 HPNTIVVDDL 10 Unmodified _HPNTIVVDDL_ 0 0 0 REV__ENST00000582227.5_1_17:31258522-31261369:+|nuORF REV__ENST00000582227.5_1_17:31258522-31261369:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 561.79345703125 2 561.793121 1121.57169 NaN NaN NaN NaN NaN NaN NaN 84.127 1 77.951 77.451 78.451 -6.1757 0 0 0 0.57227 1 55333 55333 22.736 1.8651 1 + 20412 16980 13927 14189 24122 24122 0.0157652026375672 HPNVAVYILF 10 Unmodified _HPNVAVYILF_ 0 0 0 REV__ENSG00000164187|ENST00000296603|LMBRD2 REV__ENSG00000164187|ENST00000296603|LMBRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5542297363281 3 391.553603 1171.63898 1.3782 0.00053962 0.32553 0.00012746 1.7037 0.00066709 391.55348391330966 87.035 0.65776 80.86 80.546 81.203 -6.1757 106 35 4 0 0 0 0.6192 1 57383 57383 10.151 1.4052 1 61821000 + 20413 21889 13928 14190 24123 24123 0.060025952653631975 HPNVDRTYF 9 Unmodified _HPNVDRTYF_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7783813476562 2 574.777805 1147.54106 NaN NaN NaN NaN NaN NaN NaN 30.881 1 30.881 30.381 31.381 0 0 0 0 0.6534 1 16063 16063 15.248 5.901 1 20414 1928 13929 14191 24124 24124 -0.026812133306293617 HPNVDRTYF 9 Unmodified _HPNVDRTYF_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7788696289062 2 574.777805 1147.54106 0.59021 0.00033924 0.64585 0.00037122 1.2361 0.00071046 574.777913059223 30.797 0.24418 30.694 30.571 30.815 -0.10269 13 9 2 0 0 0 0.21589 1 16008 16008 17.113 6.289 1 1098400 20415 1928 13929 14191 24125 24125 -0.026812133306293617 HPNWPNHTL 9 Unmodified _HPNWPNHTL_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2709350585938 2 558.27269 1114.53083 0.79407 0.00044331 -0.17389 -9.7079E-05 0.62018 0.00034623 558.2725168354302 35.296 0.39305 31.201 31.023 31.416 -4.0951 39 23 2 0 0 0 0.010611 1 20553 20553 78.728 50.241 1 12468000 20416 6326 13930 14192 24126 24126 -0.02185776265196182 HPNYLGDLIM 10 Oxidation (M) _HPNYLGDLIM(Oxidation (M))_ HPNYLGDLIM(1) HPNYLGDLIM(46) 0 0 1 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF ENSG00000143815|ENST00000272163|LBR;nc|ENSG00000149809|O76062-2|TM7SF2 ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7899169921875 2 594.789524 1187.56449 0.31514 0.00018744 0.025357 1.5082E-05 0.3405 0.00020252 594.7897690656425 59.74 0.50933 59.74 59.329 59.839 0 29 22 2 0 0 0 0.10424 1 33319 33319 45.7 9.5726 1 2458300 20417 5556;6039 13931 14193 24127 24127 1019 -0.02178535608322818 HPNYLGDLIM 10 Oxidation (M) _HPNYLGDLIM(Oxidation (M))_ HPNYLGDLIM(1) HPNYLGDLIM(60) 0 0 1 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF ENSG00000143815|ENST00000272163|LBR;nc|ENSG00000149809|O76062-2|TM7SF2 ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7894897460938 2 594.789524 1187.56449 0.16235 9.6566E-05 -1.169 -0.00069528 -1.0066 -0.00059872 594.7891395433332 60.235 0.4029 59.744 59.545 59.948 -0.49079 33 19 2 0 0 0 0.046375 1 32773 32773 60.074 18.234 1 15424000 20418 5556;6039 13931 14193 24128 24128 1019 -0.02178535608322818 HPNYLGDLIM 10 Oxidation (M) _HPNYLGDLIM(Oxidation (M))_ HPNYLGDLIM(1) HPNYLGDLIM(63) 0 0 1 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF ENSG00000143815|ENST00000272163|LBR;nc|ENSG00000149809|O76062-2|TM7SF2 ENSG00000143815|ENST00000272163|LBR MSMS AL20221201_MKP_PDAC_01 4 594.7890014648438 2 594.789524 1187.56449 NaN NaN NaN NaN NaN NaN NaN 66.003 1 59.827 59.327 60.327 -6.1757 0 0 0 0.029584 1 42896 42896 62.573 10.304 1 20419 5556;6039 13931 14193 24129 24129 1019 -0.02178535608322818 HPNYLGDLIM 10 Unmodified _HPNYLGDLIM_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF;nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF ENSG00000143815|ENST00000272163|LBR;nc|ENSG00000149809|O76062-2|TM7SF2 ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7916259765625 2 586.792066 1171.56958 0.85659 0.00050264 -1.4558 -0.00085424 -0.59918 -0.00035159 586.7914274194158 91.509 0.68787 85.333 84.925 85.612 -6.1757 93 38 3 0 0 0 0.051223 1 60540 60540 57.722 28.64 1 27604000 20420 5556;6039 13931 14194 24130 24130 -0.009342317456912497 HPNYPAQKY 9 Unmodified _HPNYPAQKY_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8 nc|ENSG00000101040|Q9ULU4-22|ZMYND8 nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2767944335938 2 559.274898 1116.53524 -0.19014 -0.00010634 1.2363 0.00069146 1.0462 0.00058512 559.2756842949042 18.665 0.12959 18.665 18.586 18.716 0 21 13 2 0 0 0 0.41742 1 9281 9281 11.64 7.6959 1 479540 20421 16088 13932 14195 24131 24131 -0.018363118422712432 HPNYPYSDEY 10 Unmodified _HPNYPYSDEY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.7621459960938 2 642.762017 1283.50948 -0.65466 -0.00042079 0.20877 0.00013419 -0.44589 -0.0002866 642.762088858276 33.758 0.51885 33.758 33.526 34.044 0 117 33 5 0 0 0 0.027759 3 17817 17604;17709;17817 69.105 52.956 1 171730000 20422 9767 13933 14196 24132;24133;24134 24134 -0.12093250875227568 HPNYPYSDEY 10 Unmodified _HPNYPYSDEY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.7618408203125 2 642.762017 1283.50948 0.19829 0.00012745 0.20388 0.00013105 0.40217 0.0002585 642.7621789539364 33.666 0.33839 33.695 33.543 33.881 0.028934 32 14 3 0 0 0 0.29752 1 17725 17725 27.629 16.134 1 1905400 20423 9767 13933 14196 24135 24135 -0.12093250875227568 HPNYPYSDEY 10 Unmodified _HPNYPYSDEY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.76318359375 2 642.762017 1283.50948 0.61018 0.0003922 -0.44982 -0.00028913 0.16036 0.00010307 642.7617827699169 38.265 0.58288 33.896 33.597 34.18 -4.3689 119 35 4 0 0 0 0.033218 3 22393 22393;22513;22641 66.457 41.466 1 307960000 20424 9767 13933 14196 24136;24137;24138 24136 -0.12093250875227568 HPPCWRERR 9 Unmodified _HPPCWRERR_ 0 0 0 REV__ENST00000503969.5_1_5:76414257-76443501:+|nuORF REV__ENST00000503969.5_1_5:76414257-76443501:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8786315917969 3 412.877086 1235.60943 NaN NaN NaN NaN NaN NaN NaN 20.686 1 20.686 20.186 21.186 0 0 0 0 0.85737 1 10421 10421 0.26902 0.1097 1 + 20425 28047 13934 14197 24139 24139 0.0010475276822035084 HPPDLGGLEAL 11 Unmodified _HPPDLGGLEAL_ 0 0 0 nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;ENST00000575604.1_1_16:2983808-2987136:+|nuORF;nc|ENSG00000059122|Q4VC44-5|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;ENST00000574985.1_1_16:2986529-2998725:+|nuORF;ENST00000570752.5_1_16:2986460-2998725:+|nuORF nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF nc|ENSG00000059122|Q4VC44-2|FLYWCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7967529296875 2 559.795663 1117.57677 0.45462 0.00025449 -0.9198 -0.0005149 -0.46518 -0.00026041 559.7949100189662 61.416 0.66319 61.416 60.999 61.663 0 66 29 3 0 0 0 0.16973 1 34199 34199 34.402 5.3201 1 1961400 20426 811;15481 13935 14198 24140 24140 0.022688241263722375 HPPEEEVHY 9 Unmodified _HPPEEEVHY_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MSMS AL20221201_MKP_PDAC_01 4 568.7530517578125 2 568.753995 1135.49344 NaN NaN NaN NaN NaN NaN NaN 24.347 1 21.519 21.019 22.019 -2.8273 0 0 0 0.10545 1 13249 13249 42.095 25.152 1 20427 907 13936 14199 24141 24141 -0.06888912321483076 HPPEVVLTDF 10 Unmodified _HPPEVVLTDF_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2989501953125 2 577.298039 1152.58152 0.33834 0.00019532 1.3109 0.0007568 1.6493 0.00095212 577.2987140797529 63.552 0.29673 63.552 63.482 63.779 0 24 12 3 0 0 0 0.074936 1 35463 35463 52.268 33.011 1 1000100 20428 974 13937 14200 24142 24142 0.011337082691397882 HPPGVQPQQPP 11 Unmodified _HPPGVQPQQPP_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.8092041015625 2 591.306729 1180.59891 -0.31163 -0.00018427 0.27015 0.00015974 -0.041477 -2.4526E-05 591.3068431188213 23.506 0.49191 23.506 23.243 23.735 0 49 24 3 0 0 0 0.56638 1 11912 11912 13.042 4.2971 1 1433400 20429 3032 13938 14201 24143 24143 0.015830485948072237 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.28125 2 604.779816 1207.54508 0.37238 0.00022521 0.035465 2.1449E-05 0.40785 0.00024666 604.7798725359842 50.942 0.41997 50.528 50.338 50.758 -0.41351 50 20 3 0 0 0 0.040472 2 27430 27430;27535 49.669 33.822 1 4194800 20430 2720 13939 14202 24144;24145 24144 -0.05039123836922954 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.7797241210938 2 604.779816 1207.54508 0.88598 0.00053582 -0.092216 -5.577E-05 0.79377 0.00048005 604.7795674515681 50.574 0.50016 50.52 50.266 50.766 -0.053871 79 24 4 0 0 0 0.0089973 3 27362 27266;27362;27467 86.121 66.864 1 32512000 20431 2720 13939 14202 24146;24147;24148 24147 -0.05039123836922954 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5230407714844 3 403.522303 1207.54508 0.71608 0.00028896 -0.16672 -6.7273E-05 0.54937 0.00022168 403.52220038208276 50.574 0.36295 50.52 50.325 50.688 -0.053871 28 17 2 0 0 0 0.22317 1 27313 27313 13.906 11.408 1 2960200 20432 2720 13939 14202 24149 24149 -0.05039123836922954 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7803955078125 2 604.779816 1207.54508 0.68025 0.0004114 0.086931 5.2574E-05 0.76718 0.00046397 604.7795689764707 55.453 0.51939 49.531 49.3 49.819 -5.9211 74 31 3 0 0 0 1.3434E-06 3 35342 35214;35342;35477 161.58 129.28 1 39595000 20433 2720 13939 14202 24150;24151;24152 24151 -0.05039123836922954 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7772216796875 2 604.779816 1207.54508 0.90591 0.00054787 -1.3184 -0.00079736 -0.41252 -0.00024949 604.7789579158509 79.525 0.94779 73.35 72.712 73.659 -6.1757 79 54 2 0 0 0 0.010712 3 51863 51863;52039;52259 78.445 61.502 1 16819000 20434 2720 13939 14202 24153;24154;24155 24153 -0.05039123836922954 HPPHYFFTY 9 Unmodified _HPPHYFFTY_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MSMS AL20221201_MKP_PDAC_01 4 403.522216796875 3 403.522303 1207.54508 NaN NaN NaN NaN NaN NaN NaN 55.543 1 49.622 49.122 50.122 -5.9211 0 0 0 0.38239 1 35368 35368 13.906 2.4113 1 20435 2720 13939 14202 24156 24156 -0.05039123836922954 HPPLQPGAA 9 Unmodified _HPPLQPGAA_ 0 0 0 REV__ENST00000334983.9_1_3:32433340-32483402:+|nuORF REV__ENST00000334983.9_1_3:32433340-32483402:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2412719726562 2 444.240327 886.466101 0.93808 0.00041673 0.48339 0.00021474 1.4215 0.00063147 444.24081308201033 56.956 0.61844 56.887 56.497 57.116 -0.068741 54 30 2 0 0 0 0.53666 1 30985 30985 5.2307 2.3415 1 3614000 + 20436 25631 13940 14203 24157 24157 0.018326489287915138 HPPNLLELF 9 Unmodified _HPPNLLELF_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2970581054688 2 540.297842 1078.58113 NaN NaN NaN NaN NaN NaN NaN 90.81 1 90.316 89.816 90.816 -0.49457 0 0 0 0.36554 1 49638 49638 21.747 10.106 1 20437 6015 13941 14204 24158 24158 0.04498333339938654 HPPNLLELF 9 Unmodified _HPPNLLELF_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.9488525390625 2 540.297842 1078.58113 NaN NaN NaN NaN NaN NaN NaN 90.894 1 90.399 89.899 90.899 -0.49457 0 0 0 0.32177 1 49686 49686 24.021 6.9077 1 20438 6015 13941 14204 24159 24159 0.04498333339938654 HPPNRRVL 8 Unmodified _HPPNRRVL_ 0 0 0 ENST00000582436.5_1_17:27237055-27251401:-|nuORF;nc|ENSG00000109118|Q96QT6-3|PHF12;ENST00000582655.5_1_17:27237828-27251299:-|nuORF;nc|ENSG00000109118|Q96QT6-2|PHF12;nc|ENSG00000109118|Q96QT6-5|PHF12;ENSG00000109118|ENST00000332830|PHF12 ENST00000582436.5_1_17:27237055-27251401:-|nuORF ENST00000582436.5_1_17:27237055-27251401:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7945251464844 2 494.793592 987.572632 0.21167 0.00010473 0.43688 0.00021617 0.64856 0.0003209 494.7938922427174 16.57 0.20898 14.013 13.907 14.116 -2.557 46 30 2 0 0 0 0.67481 1 8578 8578 19.439 2.4967 1 4215400 20439 15572 13942 14205 24160 24160 0.07834824213978209 HPPPGSHLLY 10 Unmodified _HPPPGSHLLY_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.291748046875 2 559.293091 1116.57163 0.26294 0.00014706 -0.86748 -0.00048518 -0.60454 -0.00033812 559.2924720396715 31.803 0.61441 31.674 31.454 32.069 -0.12915 32 24 2 0 0 0 0.16524 1 16503 16503 37.974 19.839 1 2004100 20440 2788 13943 14206 24161 24161 0.018005650544182572 HPPPGSHLLY 10 Unmodified _HPPPGSHLLY_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MSMS AL20221201_MKP_PDAC_01 4 559.2919921875 2 559.293091 1116.57163 NaN NaN NaN NaN NaN NaN NaN 35.589 1 31.396 30.896 31.896 -4.1928 0 0 0 0.44191 1 20672 20672 29.082 13.234 1 20441 2788 13943 14206 24162 24162 0.018005650544182572 HPPTDLVAF 9 Unmodified _HPPTDLVAF_ 0 0 0 ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7616271972656 2 498.761092 995.507631 0.39054 0.00019479 0.27626 0.00013779 0.6668 0.00033258 498.7612715120015 84.17 0.29063 83.67 83.528 83.819 -0.49962 28 12 3 0 0 0 0.32871 1 46061 46061 15.847 9.124 1 1101000 20442 9476 13944 14207 24163 24163 0.009697848974724366 HPPTSRPTL 9 Unmodified _HPPTSRPTL_ 0 0 0 REV__nc|ENSG00000123965|A8MQ11|PMS2P5 REV__nc|ENSG00000123965|A8MQ11|PMS2P5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2777099609375 2 503.277441 1004.54033 -0.11921 -5.9994E-05 0.38303 0.00019277 0.26382 0.00013278 503.2776052035634 25.643 0.45349 22.692 22.414 22.868 -2.9511 53 25 3 0 0 0 0.028475 1 13992 13992 56.177 4.5472 1 15011000 + 20443 29510 13945 14208 24164 24164 0.03823992020318201 HPQDGQVVF 9 Unmodified _HPQDGQVVF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.75537109375 2 513.753798 1025.49304 0.72901 0.00037453 -0.52719 -0.00027085 0.20182 0.00010369 513.7536542829613 36.497 0.2794 36.497 36.369 36.648 0 25 13 2 0 0 0 0.05447 1 19321 19321 43.858 7.8141 1 4511600 20444 887 13946 14209 24165 24165 -0.01868287250681533 HPQDGQVVF 9 Unmodified _HPQDGQVVF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MSMS AL20221201_MKP_PDAC_01 4 513.7539672851562 2 513.753798 1025.49304 NaN NaN NaN NaN NaN NaN NaN 40.645 1 36.115 35.615 36.615 -4.5294 0 0 0 0.074615 1 24301 24301 49.933 19.708 1 20445 887 13946 14209 24166 24166 -0.01868287250681533 HPQDGQVVFY 10 Unmodified _HPQDGQVVFY_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109414-1111598:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7858276367188 2 595.285463 1188.55637 -0.10905 -6.4914E-05 -1.0624 -0.0006324 -1.1714 -0.00069732 595.2851847989938 44.101 0.16586 44.101 44.005 44.171 0 13 8 2 0 0 0 0.13297 1 23992 23992 41.956 30.315 1 11629000 20446 887 13947 14210 24167 24167 -0.030363465334176 HPQDSAFSY 9 Unmodified _HPQDSAFSY_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000474637.5_1_9:128108952-128125022:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2258911132812 2 526.227613 1050.44067 1.3539 0.00071248 -0.56881 -0.00029933 0.78513 0.00041315 526.2273208679354 35.802 0.44202 31.609 31.457 31.899 -4.1928 66 27 3 0 0 0 0.020973 2 20775 20775;20910 62.573 36.231 1 24133000 20447 7311 13948 14211 24168;24169 24168 -0.08252870384285416 HPQEVYNEY 9 Unmodified _HPQEVYNEY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7586669921875 2 589.759278 1177.504 -0.5982 -0.00035279 0.44827 0.00026437 -0.14993 -8.8425E-05 589.7595674585682 27.064 0.2247 27.064 26.93 27.155 0 34 10 4 0 0 0 0.014417 1 13895 13895 69.105 45.084 1 15903000 20448 5324 13949 14212 24170 24170 -0.07764929667041542 HPQEVYNEY 9 Unmodified _HPQEVYNEY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7588500976562 2 589.759278 1177.504 NaN NaN NaN NaN NaN NaN NaN 28.925 1 28.955 28.455 29.455 0.030106 0 0 0 0.85737 1 15075 15075 0.6015 0 1 20449 5324 13949 14212 24171 24171 -0.07764929667041542 HPQEVYNEY 9 Unmodified _HPQEVYNEY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.760498046875 2 589.759278 1177.504 0.90919 0.00053621 0.012657 7.4648E-06 0.92185 0.00054367 589.7592728017088 30.417 0.27358 26.92 26.797 27.07 -3.497 23 13 2 0 0 0 0.014417 2 17129 17129;17254 69.105 34.703 1 17814000 20450 5324 13949 14212 24172;24173 24172 -0.07764929667041542 HPQFVTDVM 9 Oxidation (M) _HPQFVTDVM(Oxidation (M))_ HPQFVTDVM(1) HPQFVTDVM(50) 0 0 1 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000431492.2_1_1:192216230-192216602:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2554321289062 2 545.255317 1088.49608 -0.37091 -0.00020224 -0.060181 -3.2814E-05 -0.43109 -0.00023505 545.2555431085436 35.049 0.45376 35.049 34.773 35.227 0 63 23 3 0 0 0 0.039985 1 18508 18508 49.933 26.785 1 20154000 20451 7151 13950 14213 24174 24174 1237 -0.044627801881688356 HPQFVTDVM 9 Oxidation (M) _HPQFVTDVM(Oxidation (M))_ HPQFVTDVM(1) HPQFVTDVM(50) 0 0 1 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000431492.2_1_1:192216230-192216602:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.25537109375 2 545.255317 1088.49608 -0.55141 -0.00030066 0.78618 0.00042867 0.23477 0.00012801 545.2556975227488 35.248 0.67038 35.025 34.575 35.245 -0.2224 68 29 4 0 0 0 0.039985 2 18341 18341;18447 49.933 26.785 1 7075200 20452 7151 13950 14213 24175;24176 24175 1237 -0.044627801881688356 HPQFVTDVM 9 Oxidation (M) _HPQFVTDVM(Oxidation (M))_ HPQFVTDVM(1) HPQFVTDVM(50) 0 0 1 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000431492.2_1_1:192216230-192216602:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.256103515625 2 545.255317 1088.49608 0.21072 0.00011489 2.0409 0.0011128 2.2516 0.0012277 545.2567954174067 39.911 0.45159 35.382 35.044 35.496 -4.5294 61 30 3 0 0 0 0.039985 1 23625 23625 49.933 17.628 1 41089000 20453 7151 13950 14213 24177 24177 1237 -0.044627801881688356 HPQFVTDVM 9 Unmodified _HPQFVTDVM_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000431492.2_1_1:192216230-192216602:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.25830078125 2 537.257859 1072.50117 0.79287 0.00042597 -1.2141 -0.0006523 -0.42126 -0.00022633 537.2574776889724 55.688 0.49936 49.767 49.525 50.024 -5.9211 73 29 4 0 0 0 0.039985 2 35473 35473;35604 49.933 15.531 1 72469000 20454 7151 13950 14214 24178;24179 24178 -0.03218476325537267 HPQGFEVAL 9 Unmodified _HPQGFEVAL_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.775634765625 2 499.258717 996.50288 0.97587 0.00048721 -0.27443 -0.00013701 0.70144 0.0003502 499.25880049823303 54.341 0.28869 54.341 54.173 54.462 0 18 12 2 0 0 0 0.18882 1 30132 30132 15.847 2.3393 1 2887300 20455 8712 13951 14215 24180 24180 0.004489007547022084 HPQGFEVAL 9 Unmodified _HPQGFEVAL_ 0 0 0 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 ENSG00000177854|ENST00000369982|TMEM187 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2584533691406 2 499.258717 996.50288 NaN NaN NaN NaN NaN NaN NaN 54.831 1 54.364 53.864 54.864 -0.46664 0 0 0 0.098163 1 29727 29727 43.858 9.671 1 20456 8712 13951 14215 24181 24181 0.004489007547022084 HPQGTHFT 8 Unmodified _HPQGTHFT_ 0 0 0 REV__ENSG00000116459|ENST00000369722|ATP5PB REV__ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7196350097656 2 462.719759 923.424964 -0.69706 -0.00032254 0.050713 2.3466E-05 -0.64635 -0.00029908 462.7198052240648 18.039 0.22637 18.053 17.913 18.139 0.013865 55 37 2 0 0 0 0.79783 1 9015 9015 7.9102 0 1 1847200 + 20457 19042 13952 14216 24182 24182 -0.03981112110659524 HPQGTHFT 8 Unmodified _HPQGTHFT_ 0 0 0 REV__ENSG00000116459|ENST00000369722|ATP5PB REV__ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7205810546875 2 462.719759 923.424964 0.77623 0.00035918 0.47866 0.00022149 1.2549 0.00058066 462.71990653665773 18.666 0.28185 16.044 15.923 16.205 -2.6215 43 25 2 0 0 0 0.79783 1 9794 9794 7.9102 0 1 2974000 + 20458 19042 13952 14216 24183 24183 -0.03981112110659524 HPQGTHFT 8 Unmodified _HPQGTHFT_ 0 0 0 REV__ENSG00000116459|ENST00000369722|ATP5PB REV__ENSG00000116459|ENST00000369722|ATP5PB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.9379272460938 2 462.719759 923.424964 0.77623 0.00035918 0.47866 0.00022149 1.2549 0.00058066 462.71990653665773 18.666 0.28185 16.044 15.923 16.205 -2.6215 43 25 2 0 0 0 8.7369 1 9855 9855 7.9102 0 1 2974000 + 20459 19042 13952 14216 24184 24184 -0.03981112110659524 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.826904296875 2 547.827101 1093.63965 0.39063 0.000214 -0.36155 -0.00019806 0.029085 1.5934E-05 547.8268523968354 50.919 0.59732 50.865 50.648 51.246 -0.053871 102 29 5 0 0 0 0.008678 3 27477 27477;27586;27690 88.904 48.946 1 212700000 20460 4726 13953 14217 24185;24186;24187 24185 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5537719726562 3 365.553826 1093.63965 0.30802 0.0001126 0.045816 1.6748E-05 0.35384 0.00012935 365.55373103221996 50.943 0.33843 50.889 50.708 51.047 -0.053875 38 16 3 0 0 0 0.06187 2 27510 27510;27610 31.268 22.292 1 10465000 20461 4726 13953 14217 24188;24189 24188 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8277587890625 2 547.827101 1093.63965 0.3679 0.00020155 -0.01731 -9.4827E-06 0.35059 0.00019206 547.8270607951887 55.936 0.49044 50.014 49.737 50.227 -5.9211 64 28 3 0 0 0 0.019303 2 35751 35612;35751 64.236 38.837 1 84021000 20462 4726 13953 14217 24190;24191 24191 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.553955078125 3 365.553826 1093.63965 1.0912 0.00039888 -0.17727 -6.48E-05 0.91391 0.00033408 365.553715460046 55.92 0.37167 49.999 49.782 50.153 -5.9211 35 21 2 0 0 0 0.038285 1 35624 35624 38.176 18.814 1 23860000 20463 4726 13953 14217 24192 24192 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8279418945312 2 547.827101 1093.63965 0.2802 0.0001535 0.53868 0.0002951 0.81888 0.0004486 547.8273336459739 78.659 1.0716 72.484 71.915 72.986 -6.1757 181 63 4 0 0 0 0.011968 4 51258 51258;51381;51510;51642 74.929 49.53 1 142520000 20464 4726 13953 14217 24193;24194;24195;24196 24193 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8884887695312 3 365.553826 1093.63965 1.0191 0.00037252 -0.20015 -7.3167E-05 0.81891 0.00029936 365.55377763455436 78.655 0.90884 72.479 72.041 72.95 -6.1757 127 54 3 0 0 0 0.013323 4 51292 51292;51422;51559;51695 55.503 38.937 1 49638000 20465 4726 13953 14217 24197;24198;24199;24200 24197 0.09657434705081869 HPQIIIRAF 9 Unmodified _HPQIIIRAF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.827101 1093.63965 -0.16119 -8.8305E-05 -1.4328 -0.00078494 -1.594 -0.00087325 547.8260878943051 51.29 0.09552 50.877 50.817 50.912 -0.41351 0.0057278 -0.0011263 NaN 88.904 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 922220 20466 4726 13953 14217 0.09657434705081869 HPQINKIAF 9 Unmodified _HPQINKIAF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8050537109375 2 534.303458 1066.59236 0.30097 0.00016081 0.74398 0.00039751 1.0449 0.00055832 534.3034698472309 40.195 0.35857 39.897 39.735 40.094 -0.29716 46 16 4 0 0 0 0.024882 2 21192 21192;21298 58.679 22.552 1 24738000 20467 9235 13954 14218 24201;24202 24201 0.061731554340894945 HPQINKIAF 9 Unmodified _HPQINKIAF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.303955078125 2 534.303458 1066.59236 0.35089 0.00018748 0.35046 0.00018725 0.70136 0.00037474 534.3036172617851 39.816 0.37914 39.821 39.647 40.026 0.0050545 59 17 5 0 0 0 0.009483 2 21164 21164;21264 81.89 47.488 1 50724000 20468 9235 13954 14218 24203;24204 24203 0.061731554340894945 HPQINKIAF 9 Unmodified _HPQINKIAF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.3038330078125 2 534.303458 1066.59236 0.4901 0.00026186 0.33164 0.0001772 0.82174 0.00043906 534.3035544026214 44.006 0.50351 39.241 38.967 39.471 -4.7648 102 32 4 0 0 0 0.047196 2 26816 26685;26816 46.021 24.274 1 205390000 20469 9235 13954 14218 24205;24206 24206 0.061731554340894945 HPQINKIAF 9 Unmodified _HPQINKIAF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5385131835938 3 356.538064 1066.59236 1.2353 0.00044043 0.26991 9.6234E-05 1.5052 0.00053666 356.53808643777995 44.021 0.41091 39.256 39.019 39.43 -4.7648 68 26 4 0 0 0 0.16226 1 26819 26819 19.362 11.753 1 43949000 20470 9235 13954 14218 24207 24207 0.061731554340894945 HPQINKIAF 9 Unmodified _HPQINKIAF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.303458 1066.59236 0.25829 0.000138 2.5954 0.0013867 2.8537 0.0015247 534.3039154852191 39.901 0.15929 39.901 39.792 39.952 0 0.027981 0.0022611 NaN 81.89 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1319600 20471 9235 13954 14218 0.061731554340894945 HPQLQDRDF 9 Unmodified _HPQLQDRDF_ 0 0 0 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8584594726562 3 385.856233 1154.54687 NaN NaN NaN NaN NaN NaN NaN 46.378 1 46.378 45.878 46.878 0 0 0 0 0.84369 1 25348 25348 1.1933 0 1 20472 4445 13955 14219 24208 24208 -0.024221148189553787 HPQNEMERF 9 Unmodified _HPQNEMERF_ 0 0 0 REV__nc|ENSG00000143322|P42684-10|ABL2 REV__nc|ENSG00000143322|P42684-10|ABL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5138549804688 3 396.51359 1186.51894 NaN NaN NaN NaN NaN NaN NaN 17.906 1 17.911 17.411 18.411 0.0050564 0 0 0 0.84369 1 9053 9053 1.1933 0.12188 1 + 20473 29676 13956 14220 24209 24209 -0.06685761070707485 HPQPGAVEL 9 Unmodified _HPQPGAVEL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2511596679688 2 474.250892 946.48723 0.46692 0.00022144 0.31381 0.00014882 0.78072 0.00037026 474.25083645836565 38.785 0.50061 34.334 34.115 34.616 -4.4509 59 31 3 0 0 0 0.1773 1 22994 22994 25.399 5.9603 1 52167000 20474 1399 13957 14221 24210 24210 0.011846142376612079 HPQPRPVAF 9 Unmodified _HPQPRPVAF_ 0 0 0 ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7864990234375 2 524.787976 1047.5614 0.52504 0.00027554 -0.55624 -0.00029191 -0.0312 -1.6373E-05 524.787802953053 29.349 0.18179 29.286 29.164 29.346 -0.062159 18 7 4 0 0 0 0.014417 1 15151 15151 77.984 41.94 1 20652000 20475 11566 13958 14222 24211 24211 0.03952002119831377 HPQPRPVAF 9 Unmodified _HPQPRPVAF_ 0 0 0 ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7883911132812 2 524.787976 1047.5614 0.018942 9.9405E-06 0.39617 0.00020791 0.41511 0.00021785 524.7882831126278 29.138 0.22053 29.168 29.054 29.274 0.030106 18 8 3 0 0 0 0.078314 1 15185 15185 50.855 27.707 1 4902200 20476 11566 13958 14222 24212 24212 0.03952002119831377 HPQPRPVAF 9 Unmodified _HPQPRPVAF_ 0 0 0 ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7881469726562 2 524.787976 1047.5614 1.0939 0.00057408 -0.35391 -0.00018573 0.74001 0.00038835 524.787837865211 32.222 0.3545 28.366 28.179 28.533 -3.8562 55 20 3 0 0 0 0.0090524 2 18255 18255;18380 97.075 46.22 1 53283000 20477 11566 13958 14222 24213;24214 24213 0.03952002119831377 HPQPRPVAF 9 Unmodified _HPQPRPVAF_ 0 0 0 ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1947021484375 3 350.194409 1047.5614 1.7664 0.00061858 0.064661 2.2644E-05 1.831 0.00064122 350.1942836353247 32.26 0.34887 28.404 28.233 28.582 -3.8562 26 20 2 0 0 0 0.1685 1 18361 18361 26.268 11.02 1 12212000 20478 11566 13958 14222 24215 24215 0.03952002119831377 HPQPRPVAF 9 Unmodified _HPQPRPVAF_ 0 0 0 ENST00000301073.3_1_19:56111763-56113741:+|nuORF;ENST00000591046.1_1_19:56113414-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF ENST00000301073.3_1_19:56111763-56113741:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.787976 1047.5614 0.067263 3.5299E-05 -1.5394 -0.00080784 -1.4721 -0.00077254 525.2887130252261 29.38 0.16655 29.38 29.285 29.451 0 0.10208 -0.001586 NaN 77.984 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 622400 20479 11566 13958 14222 0.03952002119831377 HPQPTQVQF 9 Unmodified _HPQPTQVQF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2750854492188 2 541.274898 1080.53524 0.061925 3.3518E-05 -1.4293 -0.00077367 -1.3674 -0.00074015 541.274960434751 35.705 0.37905 35.705 35.479 35.858 0 42 18 3 0 0 0 0.018301 2 18871 18871;18979 65.235 33.967 1 33091000 20480 8230 13959 14223 24216;24217 24216 -0.0018031184229130304 HPQPTQVQF 9 Unmodified _HPQPTQVQF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2752685546875 2 541.274898 1080.53524 -0.62941 -0.00034068 -0.14224 -7.6992E-05 -0.77165 -0.00041768 541.2747989887342 35.869 0.34321 35.647 35.45 35.793 -0.2224 47 14 5 0 0 0 0.028475 2 18754 18754;18853 56.177 29.293 1 41759000 20481 8230 13959 14223 24218;24219 24218 -0.0018031184229130304 HPQPTQVQF 9 Unmodified _HPQPTQVQF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2750244140625 2 541.274898 1080.53524 0.11041 5.9765E-05 0.55168 0.00029861 0.6621 0.00035838 541.2752956842396 39.904 0.46801 35.374 35.14 35.608 -4.5294 86 36 3 0 0 0 0.018301 2 23665 23665;23800 65.235 31.133 1 155710000 20482 8230 13959 14223 24220;24221 24220 -0.0018031184229130304 HPQPTQVQF 9 Unmodified _HPQPTQVQF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MSMS AL20221201_MKP_PDAC_01 4 541.2749633789062 2 541.274898 1080.53524 NaN NaN NaN NaN NaN NaN NaN 40.148 1 35.619 35.119 36.119 -4.5294 0 0 0 0.12343 1 23941 23941 39.95 14.55 1 20483 8230 13959 14223 24222 24222 -0.0018031184229130304 HPQPTQVQF 9 Unmodified _HPQPTQVQF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.274898 1080.53524 -0.072891 -3.9454E-05 -2.2713 -0.0012294 -2.3441 -0.0012688 541.2726591161803 35.539 0.21075 35.564 35.434 35.645 0.024967 -0.0086978 -0.0025277 NaN 65.235 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1475200 20484 8230 13959 14223 -0.0018031184229130304 HPQQKVAVY 9 Unmodified _HPQQKVAVY_ 0 0 0 ENSG00000102871|ENST00000345057|TRADD;ENST00000566104.1_1_16:67189803-67193780:-|nuORF ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2930908203125 2 535.293091 1068.57163 -0.28374 -0.00015188 0.096386 5.1595E-05 -0.18735 -0.00010029 535.2931546936787 19.154 0.18736 19.154 19.06 19.248 0 28 11 3 0 0 0 0.040683 1 9546 9546 37.974 9.4872 1 8233700 20485 2071 13960 14224 24223 24223 0.04008565054414248 HPQQKVAVY 9 Unmodified _HPQQKVAVY_ 0 0 0 ENSG00000102871|ENST00000345057|TRADD;ENST00000566104.1_1_16:67189803-67193780:-|nuORF ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2935791015625 2 535.293091 1068.57163 1.0824 0.00057942 -0.01589 -8.5058E-06 1.0665 0.00057091 535.2930903564113 20.615 0.42523 17.922 17.723 18.148 -2.693 77 26 4 0 0 0 0.069655 2 11019 10921;11019 49.933 21.446 1 23356000 20486 2071 13960 14224 24224;24225 24225 0.04008565054414248 HPQQPPVQY 9 Unmodified _HPQQPPVQY_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2775268554688 2 547.274898 1092.53524 -0.47784 -0.00026151 1.6281 0.00089104 1.1503 0.00062953 547.2758900885175 27.617 0.19275 27.617 27.508 27.7 0 22 8 4 0 0 0 0.098164 1 14207 14207 43.858 19.838 1 7313700 20487 2960 13961 14225 24226 24226 -0.007323118422846164 HPQQPPVQY 9 Unmodified _HPQQPPVQY_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2755126953125 2 547.274898 1092.53524 0.86954 0.00047588 0.63237 0.00034608 1.5019 0.00082196 547.2750586793943 30.94 0.17663 27.443 27.366 27.543 -3.497 12 7 2 0 0 0 0.044296 1 17527 17527 61.357 33.729 1 38666000 20488 2960 13961 14225 24227 24227 -0.007323118422846164 HPQTHETAL 9 Unmodified _HPQTHETAL_ 0 0 0 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 ENSG00000107854|ENST00000371627|TNKS2 MSMS AL20221201_MKP_PDAC_01 4 517.2572021484375 2 517.256705 1032.49886 NaN NaN NaN NaN NaN NaN NaN 16.331 1 13.774 13.274 14.274 -2.557 0 0 0 0.083082 1 8454 8454 47.749 13.646 1 20489 2522 13962 14226 24228 24228 -0.0160918873900755 HPQVSALL 8 Unmodified _HPQVSALL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000514799.1_1_5:59755891-59756539:-|nuORF nc|ENSG00000119335|Q01105-3|SET;ENST00000514799.1_1_5:59755891-59756539:-|nuORF nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7503662109375 2 432.750527 863.486502 0.3936 0.00017033 -0.19951 -8.6339E-05 0.19409 8.399E-05 432.750388846683 46.255 0.25301 45.918 45.762 46.015 -0.33664 20 12 2 0 0 0 0.36356 1 24751 24751 48.346 1.425 1 3518600 20490 3426;14660 13963 14227 24229 24229 0.049298195886080975 HPQYEVVEI 9 Unmodified _HPQYEVVEI_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2847900390625 2 557.282389 1112.55022 0.65291 0.00036385 2.4076 0.0013417 3.0605 0.0017056 557.2836716608128 50.013 0.22861 50.013 49.905 50.134 0 25 10 3 0 0 0 0.06294 1 27559 27559 41.84 9.5341 1 11165000 20491 874 13964 14228 24230 24230 -0.001548647649542545 HPQYEVVEISF 11 Unmodified _HPQYEVVEISF_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.3327026367188 2 674.33261 1346.65067 -0.12805 -8.6346E-05 0.70857 0.00047781 0.58052 0.00039146 674.3330119843328 69.652 0.2701 69.173 69.02 69.29 -0.47903 16 11 2 0 0 0 0.47965 1 38070 38070 17.443 6.6187 1 736550 20492 874 13965 14229 24231 24231 -0.008792525019543973 HPRAAYGRAL 10 Unmodified _HPRAAYGRAL_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2082824707031 3 371.20883 1110.60466 0.016756 6.2201E-06 -0.36437 -0.00013526 -0.34761 -0.00012904 371.20869507723876 17.246 0.088354 17.251 17.206 17.295 0.0050564 12 7 2 0 0 0 0.6966 1 8700 8700 1.5923 0 1 1894800 20493 7781 13966 14230 24232 24232 0.05378191897125362 HPRAPVLL 8 Unmodified _HPRAPVLL_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENST00000465442.1_1_2:219130391-219131358:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7827453613281 2 451.782162 901.549771 -0.18732 -8.4626E-05 0.72763 0.00032873 0.54032 0.00024411 451.7824465627048 37.567 0.28633 37.296 37.136 37.422 -0.27133 22 11 3 0 0 0 0.55032 1 19724 19724 30.225 5.5509 1 2548300 20494 4029 13967 14231 24233 24233 0.09505805096512177 HPRAPVLL 8 Unmodified _HPRAPVLL_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENST00000465442.1_1_2:219130391-219131358:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.7825622558594 2 451.782162 901.549771 0.22637 0.00010227 0.70337 0.00031777 0.92974 0.00042004 451.78249449670454 37.209 0.28591 37.231 37.089 37.375 0.021545 27 12 3 0 0 0 0.48669 1 19726 19726 36.044 11.37 1 4140000 20495 4029 13967 14231 24234 24234 0.09505805096512177 HPRAPVLL 8 Unmodified _HPRAPVLL_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219131145-219134809:-|nuORF;ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENST00000465442.1_1_2:219130391-219131358:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7825927734375 2 451.782162 901.549771 1.2749 0.00057596 -0.42406 -0.00019158 0.85079 0.00038437 451.78198777868846 41.018 0.42712 36.41 36.197 36.624 -4.6079 50 26 2 0 0 0 0.19792 2 24601 24461;24601 70.716 14.174 1 25625000 20496 4029 13967 14231 24235;24236 24236 0.09505805096512177 HPRAYFMQL 9 Oxidation (M) _HPRAYFM(Oxidation (M))QL_ HPRAYFM(1)QL HPRAYFM(44)QL 0 0 1 ENSG00000161980|ENST00000293860|POLR3K ENSG00000161980|ENST00000293860|POLR3K ENSG00000161980|ENST00000293860|POLR3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7926025390625 2 589.792401 1177.57025 -0.21822 -0.0001287 0.34281 0.00020219 0.12459 7.3483E-05 589.792652153288 36.608 0.38297 36.63 36.323 36.706 0.021545 38 17 3 0 0 0 0.05447 1 19292 19292 43.858 26.745 1 4106700 20497 6823 13968 14232 24237 24237 1181 -0.011433923059939843 HPRDFFSRL 9 Unmodified _HPRDFFSRL_ 0 0 0 ENST00000497920.1_1_2:97215573-97218047:+|nuORF;nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2085876464844 3 392.208718 1173.60433 0.10236 4.0145E-05 0.45729 0.00017935 0.55965 0.0002195 392.20894183431676 41.04 0.30567 41.038 40.83 41.136 -0.0017929 30 14 3 0 0 0 0.34748 1 21877 21877 14.957 2.0846 1 4143600 20498 14406 13969 14233 24238 24238 0.024467721772680306 HPRDPNLLL 9 Unmodified _HPRDPNLLL_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.8043212890625 2 537.806365 1073.59818 -0.23957 -0.00012884 -1.243 -0.00066852 -1.4826 -0.00079736 537.805216343704 40.923 0.26532 40.923 40.817 41.082 0 46 30 2 0 0 0 0.014417 1 21980 21980 69.105 21.356 1 12406000 20499 1122 13970 14234 24239 24239 0.0643225394574074 HPRDPNLLL 9 Unmodified _HPRDPNLLL_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.8063354492188 2 537.806365 1073.59818 0.092407 4.9697E-05 -0.35938 -0.00019328 -0.26698 -0.00014358 537.8062521081922 41.131 0.38683 40.828 40.622 41.009 -0.30304 43 18 3 0 0 0 0.018301 1 21742 21742 65.235 17.486 1 8649400 20500 1122 13970 14234 24240 24240 0.0643225394574074 HPRDPNLLLSV 11 Unmodified _HPRDPNLLLSV_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.9071044921875 3 420.906816 1259.69862 0.39449 0.00016604 -1.8397 -0.00077434 -1.4452 -0.0006083 420.9064406607848 52.748 0.5827 52.296 52.14 52.723 -0.45173 39 29 2 0 0 0 0.61596 1 28481 28481 10.527 0.76322 1 3899300 20501 1122 13971 14235 24241 24241 0.07915866208736588 HPRDPNQIL 9 Unmodified _HPRDPNQIL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7947387695312 2 545.293622 1088.57269 -0.4516 -0.00024626 1.128 0.0006151 0.67641 0.00036884 545.2944939449447 27.002 0.18636 27.002 26.909 27.096 0 12 8 2 0 0 0 0.31356 1 13908 13908 12.241 1.4167 1 1061400 20502 1104 13972 14236 24242 24242 0.031947794233246896 HPREDNRHLE 10 Unmodified _HPREDNRHLE_ 0 0 0 ENST00000593795.5_1_19:19101856-19104449:-|nuORF;ENST00000594773.5_1_19:19101856-19104483:-|nuORF;ENST00000597095.5_1_19:19101856-19102289:-|nuORF ENST00000593795.5_1_19:19101856-19104449:-|nuORF ENST00000593795.5_1_19:19101856-19104449:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.882568359375 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 20.156 1 20.156 19.656 20.656 0 0 0 0 0.99388 1 10128 10128 0.56317 0 1 20503 15740 13973 14237 24243 24243 -0.01625137638666274 HPREPALGP 9 Unmodified _HPREPALGP_ 0 0 0 ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2652893066406 2 487.264333 972.514114 0.2362 0.00011509 1.8352 0.00089423 2.0714 0.0010093 487.26559493266046 24.077 0.33698 21.25 21.073 21.41 -2.8273 26 18 2 0 0 0 0.13231 1 13035 13035 29.841 10.584 1 1549700 20504 6811 13974 14238 24244 24244 0.02675722848857731 HPREPTPL 8 Unmodified _HPREPTPL_ 0 0 0 ENST00000504330.5_1_4:187070406-187073132:+|nuORF ENST00000504330.5_1_4:187070406-187073132:+|nuORF ENST00000504330.5_1_4:187070406-187073132:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7604064941406 2 473.758884 945.503215 NaN NaN NaN NaN NaN NaN NaN 16.796 1 16.801 16.301 17.301 0.0050564 0 0 0 0.97444 1 8438 8438 2.5775 0 1 20505 14493 13975 14239 24245 24245 0.028283204745775947 HPRFLFQR 8 Unmodified _HPRFLFQR_ 0 0 0 REV__ENSG00000033178|ENST00000322244|UBA6 REV__ENSG00000033178|ENST00000322244|UBA6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1101.114135742188 1 1100.61121 1099.60393 -0.6509 -0.00071639 1.1447 0.0012599 0.49379 0.00054347 1101.6155673474605 19.312 0.036074 19.335 19.305 19.341 0.023106 4 2 2 0 0 0 8.7369 1 9721 9721 0.79363 0.19213 1 407670 + 20506 17155 13976 14240 24246 24246 0.058113972480896336 HPRGNTPSL 9 Unmodified _HPRGNTPSL_ 0 0 0 ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;ENST00000574829.5_1_17:4643771-4647168:+|nuORF;nc|ENSG00000141497|Q9H091-2|ZMYND15 ENSG00000141497|ENST00000433935|ZMYND15 ENSG00000141497|ENST00000433935|ZMYND15 MSMS AL20221201_MKP_PDAC_01 4 489.7581481933594 2 489.759415 977.504277 NaN NaN NaN NaN NaN NaN NaN 19.019 1 16.397 15.897 16.897 -2.6215 0 0 0 0.32177 1 10047 10047 24.021 8.1734 1 20507 5338 13977 14241 24247 24247 0.014625348434719854 HPRIASGL 8 Unmodified _HPRIASGL_ 0 0 0 ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.7481994628906 2 425.748319 849.482085 0.054858 2.3355E-05 0.35354 0.00015052 0.4084 0.00017387 425.7485653329069 25.561 0.26791 22.678 22.514 22.782 -2.8831 19 14 2 0 0 0 0.38465 1 14012 14012 46.021 0 1 2912100 20508 5476 13978 14242 24248 24248 0.05132355165721947 HPRIASGLGL 10 Unmodified _HPRIASGLGL_ 0 0 0 ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8007202148438 2 510.801083 1019.58761 0.44542 0.00022752 -1.1019 -0.00056285 -0.65648 -0.00033533 510.8005652866166 38.673 0.28105 38.685 38.559 38.84 0.011456 31 13 3 0 0 0 0.13297 1 20557 20557 41.956 9.1699 1 7221600 20509 5476 13979 14243 24249 24249 0.07860271291337995 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2935180664062 2 535.293091 1068.57163 0.23339 0.00012493 -0.13974 -7.4802E-05 0.093648 5.0129E-05 535.2930105760177 37.775 0.38326 37.775 37.604 37.988 0 35 18 2 0 0 0 0.022461 1 20099 20099 57.722 41.875 1 25072000 20510 5791 13980 14244 24250 24250 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.197509765625 3 357.197819 1068.57163 0.041662 1.4882E-05 0.31386 0.00011211 0.35553 0.00012699 357.19787837156986 37.778 0.28043 37.778 37.645 37.925 0 28 13 3 0 0 0 0.20428 1 20125 20125 22.736 14.581 1 3109000 20511 5791 13980 14244 24251 24251 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2933959960938 2 535.293091 1068.57163 -0.032476 -1.7384E-05 -0.23093 -0.00012361 -0.2634 -0.000141 535.2928523827993 38.044 0.56949 37.772 37.58 38.15 -0.27133 85 26 4 0 0 0 0.0088668 3 19942 19942;20040;20148 107.19 80.846 1 397080000 20512 5791 13980 14244 24252;24253;24254 24252 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.1973571777344 3 357.197819 1068.57163 0.0029176 1.0422E-06 0.27243 9.7313E-05 0.27535 9.8355E-05 357.19786470037553 38.057 0.42359 37.786 37.618 38.042 -0.27133 60 19 4 0 0 0 0.047714 2 19974 19974;20075 45.74 18.517 1 34539000 20513 5791 13980 14244 24255;24256 24255 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2923583984375 2 535.293091 1068.57163 -0.053107 -2.8428E-05 0.020222 1.0825E-05 -0.032885 -1.7603E-05 535.2930637734038 37.68 0.36634 37.697 37.515 37.881 0.01704 50 17 4 0 0 0 0.0088668 2 19974 19974;20077 96.111 52.253 1 35008000 20514 5791 13980 14244 24257;24258 24257 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1981201171875 3 357.197819 1068.57163 1.7591 0.00062834 -0.57884 -0.00020676 1.1802 0.00042158 357.19760087214775 42.672 0.68266 37.987 37.732 38.414 -4.6846 113 44 4 0 0 0 0.047714 4 25830 25649;25702;25830;25971 45.74 28.297 1 228180000 20515 5791 13980 14244 24259;24260;24261;24262 24261 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2942504882812 2 535.293091 1068.57163 1.0049 0.00053792 -0.81051 -0.00043386 0.19441 0.00010406 535.2926178872488 42.667 0.74934 37.982 37.721 38.47 -4.6846 146 49 4 0 0 0 0.0081 3 25659 25659;25786;25912 103.35 71.048 1 1287300000 20516 5791 13980 14244 24263;24264;24265 24263 0.04008565054414248 HPRIITEGF 9 Unmodified _HPRIITEGF_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000430443.1_1_3:190432916-190432991:+|nuORF;ENST00000419314.5_1_7:64498910-64527388:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.197819 1068.57163 -0.15723 -5.616E-05 0.18349 6.5541E-05 0.026263 9.381E-06 357.1978113568354 37.682 0.22382 37.699 37.592 37.816 0.01704 -0.11356 0.00045497 NaN 45.74 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4190800 20517 5791 13980 14244 0.04008565054414248 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.754638671875 2 452.753601 903.49265 0.37556 0.00017003 0.25201 0.0001141 0.62757 0.00028413 452.75374949537775 37.796 0.24065 37.796 37.645 37.885 0 17 11 2 0 0 0 0.75262 1 20128 20128 12.532 0.89125 1 2120800 + 20518 24097 13981 14245 24266 24266 0.0370433782014743 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7533264160156 2 452.753601 903.49265 -0.063983 -2.8969E-05 0.30752 0.00013923 0.24353 0.00011026 452.753730189899 38.069 0.37425 37.797 37.618 37.992 -0.27133 47 17 4 0 0 0 0.38465 2 19975 19975;20076 46.021 12.09 1 19612000 + 20519 24097 13981 14245 24267;24268 24267 0.0370433782014743 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7528076171875 2 452.753601 903.49265 NaN NaN NaN NaN NaN NaN NaN 37.713 1 37.73 37.23 38.23 0.01704 0 0 0 0.90769 1 20033 20033 18.135 1.1927 1 + 20520 24097 13981 14245 24269 24269 0.0370433782014743 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7539672851562 2 452.753601 903.49265 1.1967 0.00054182 -0.56786 -0.0002571 0.62886 0.00028472 452.7533330250995 42.676 0.53904 37.991 37.721 38.26 -4.6846 87 35 3 0 0 0 0.62219 1 25915 25915 24.021 0.87215 1 143930000 + 20521 24097 13981 14245 24270 24270 0.0370433782014743 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 452.753601 903.49265 0.37556 0.00017003 0.25201 0.0001141 0.62757 0.00028413 452.75374949537775 37.796 0.24065 37.796 37.645 37.885 0 -0.00070758 -3.7152E-05 NaN 46.021 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2120800 + 20522 24097 13981 14245 0.0370433782014743 HPRIVPEG 8 Unmodified _HPRIVPEG_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 452.753601 903.49265 -0.063983 -2.8969E-05 0.30752 0.00013923 0.24353 0.00011026 452.753730189899 38.069 0.37425 37.797 37.618 37.992 -0.27133 0.00070758 1.311E-05 NaN 46.021 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 19612000 + 20523 24097 13981 14245 0.0370433782014743 HPRKHVFF 8 Unmodified _HPRKHVFF_ 0 0 0 REV__ENSG00000175826|ENST00000574322|CTDNEP1 REV__ENSG00000175826|ENST00000574322|CTDNEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1067.263793945312 1 1067.58974 1066.58247 -0.38097 -0.00040672 0.48335 0.00051602 0.10238 0.0001093 1068.5894910865634 33.62 0.1133 33.46 33.394 33.507 -0.15918 6 4 2 0 0 0 8.7369 1 17542 17542 0.79363 0 1 1106000 + 20524 22895 13982 14246 24271 24271 0.05184012219365286 HPRLEGQEF 9 Unmodified _HPRLEGQEF_ 0 0 0 ENSG00000139620|ENST00000420613|KANSL2;nc|ENSG00000139620|Q9H9L4-4|KANSL2;ENST00000548254.1_1_12:49075109-49075993:-|nuORF ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7774658203125 2 556.777805 1111.54106 -0.12403 -6.9059E-05 -2.1126 -0.0011762 -2.2366 -0.0012453 556.7766467086589 26.097 0.15952 26.097 25.986 26.145 0 12 7 2 0 0 0 0.1685 1 13399 13399 26.268 7.0112 1 1443200 20525 5170 13983 14247 24272 24272 -0.010252133306039468 HPRMSPNLQT 10 Unmodified _HPRMSPNLQT_ 0 0 0 REV__USP6NL|p.R668M|1|0.22|ENSG00000148429|chr10:11462925-11462925|C/A|missense_variant REV__USP6NL|p.R668M|1|0.22|ENSG00000148429|chr10:11462925-11462925|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.79833984375 2 590.798214 1179.58188 0.084962 5.0196E-05 -1.3606 -0.00080386 -1.2757 -0.00075367 590.7970367637467 84.5 0.201 84.5 84.409 84.61 0 12 8 2 0 0 0 0.71123 1 46871 46871 1.6526 0.17072 1 295990 + 20526 30133 13984 14248 24273 24273 -0.0007319528265270492 HPRMSPNLQT 10 Unmodified _HPRMSPNLQT_ 0 0 0 REV__USP6NL|p.R668M|1|0.22|ENSG00000148429|chr10:11462925-11462925|C/A|missense_variant REV__USP6NL|p.R668M|1|0.22|ENSG00000148429|chr10:11462925-11462925|C/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 590.798214 1179.58188 0.084962 5.0196E-05 -1.3606 -0.00080386 -1.2757 -0.00075367 590.7970367637467 84.5 0.201 84.5 84.409 84.61 0 0 0 NaN 1.6526 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 295990 + 20527 30133 13984 14248 -0.0007319528265270492 HPRMVILRL 9 Unmodified _HPRMVILRL_ 0 0 0 nc|ENSG00000153094|O43521-20|BCL2L11;nc|ENSG00000153094|O43521-18|BCL2L11;nc|ENSG00000153094|O43521-3|BCL2L11;nc|ENSG00000153094|O43521-2|BCL2L11;nc|ENSG00000153094|O43521-19|BCL2L11;nc|ENSG00000153094|O43521-12|BCL2L11;ENSG00000153094|ENST00000393256|BCL2L11 nc|ENSG00000153094|O43521-20|BCL2L11 nc|ENSG00000153094|O43521-20|BCL2L11 MSMS AL20221201_MKP_PDAC_01 4 378.9031066894531 3 378.902461 1133.68555 NaN NaN NaN NaN NaN NaN NaN 92.186 1 86.01 85.51 86.51 -6.1757 0 0 0 0.41346 1 60954 60954 18.373 10.764 1 20528 6238 13985 14249 24274 24274 0.1240575661568073 HPRQEQIAL 9 Unmodified _HPRQEQIAL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5373229980469 3 364.536724 1090.58834 -0.67855 -0.00024736 1.3426 0.00048941 0.66401 0.00024206 364.53741219525324 27.571 0.18969 27.571 27.469 27.659 0 13 8 2 0 0 0 0.32871 1 14225 14225 15.248 3.0078 1 1130400 20529 7176 13986 14250 24275 24275 0.04667065940361681 HPRQEQIAL 9 Unmodified _HPRQEQIAL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3004150390625 2 546.301447 1090.58834 0.45402 0.00024803 -0.22048 -0.00012045 0.23354 0.00012758 546.3014051066666 29.994 0.26411 26.497 26.328 26.592 -3.497 14 12 2 0 0 0 0.025842 1 16896 16896 57.722 19.748 1 17489000 20530 7176 13986 14250 24276 24276 0.04667065940361681 HPRREEHRY 9 Unmodified _HPRREEHRY_ 0 0 0 ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENST00000532776.5_1_11:65429156-65429483:-|nuORF ENST00000531484.5_1_11:65421851-65429483:-|nuORF ENST00000531484.5_1_11:65421851-65429483:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.3250732421875 2 640.323777 1278.633 0.58216 0.00037277 2.8623 0.0018328 3.4445 0.0022056 640.3253024499111 49.829 0.21055 44.289 44.183 44.393 -5.5391 16 12 2 0 0 0 0.34999 1 31209 31209 14.838 0.93222 1 11662000 20531 14908 13987 14251 24277 24277 0.004828898064261011 HPRRGDLQI 9 Unmodified _HPRRGDLQI_ 0 0 0 nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;ENST00000560902.5_1_15:101872079-101922328:-|nuORF;ENST00000558154.1_1_15:101906377-101922391:-|nuORF;nc|ENSG00000140479|P29122-6|PCSK6 nc|ENSG00000140479|P29122-5|PCSK6 nc|ENSG00000140479|P29122-5|PCSK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5409545898438 3 364.540468 1090.59957 1.8611 0.00067846 -1.0572 -0.00038537 0.80399 0.00029309 364.5403023973556 21.446 0.45071 18.711 18.603 19.054 -2.7348 74 36 3 0 0 0 0.46162 1 11448 11448 9.544 2.0669 1 6621100 20532 5242 13988 14252 24278 24278 0.05789888034519208 HPRRGSLEL 9 Unmodified _HPRRGSLEL_ 0 0 0 ENSG00000160613|ENST00000320934|PCSK7;ENST00000532810.5_1_11:117077509-117079761:-|nuORF;ENST00000533135.1_1_11:117078559-117089797:-|nuORF;ENST00000534529.5_1_11:117078449-117094061:-|nuORF ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5376281738281 3 355.536835 1063.58868 1.8009 0.00064028 -0.52382 -0.00018624 1.2771 0.00045405 355.53663702650425 21.721 0.73771 18.986 18.733 19.471 -2.7348 83 44 2 0 0 0 0.40476 1 11708 11708 8.4443 2.2525 1 44168000 20533 6738 13989 14253 24279 24279 0.05942485660239072 HPRRLPPK 8 Unmodified _HPRRLPPK_ 0 0 0 REV__ENSG00000059758|ENST00000261211|CDK17 REV__ENSG00000059758|ENST00000261211|CDK17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2660522460938 2 500.811785 999.609017 -0.22865 -0.00011451 -0.3328 -0.00016667 -0.56145 -0.00028118 500.8117593605196 41.129 0.17295 41.129 41.045 41.218 0 13 8 2 0 0 0 8.7369 1 22200 22200 5.7604 0 1 2117000 + 20534 17320 13990 14254 24280 24280 0.10919701110685764 HPRSPNVLSV 10 Unmodified _HPRSPNVLSV_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.31005859375 2 553.309272 1104.60399 0.29857 0.0001652 2.4939 0.0013799 2.7925 0.0015451 553.3109209526992 31.638 0.215 31.509 31.408 31.623 -0.12915 13 8 3 0 0 0 0.18439 1 16466 16466 35.612 11.592 1 944520 20535 1860 13991 14255 24281 24281 0.055873524574280964 HPRSPTPTL 9 Unmodified _HPRSPTPTL_ 0 0 0 ENSG00000068489|ENST00000262293|PRR11 ENSG00000068489|ENST00000262293|PRR11 ENSG00000068489|ENST00000262293|PRR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2782592773438 2 503.277441 1004.54033 -0.45653 -0.00022976 -1.0009 -0.00050375 -1.4575 -0.00073351 503.2773922350008 23.174 0.18124 23.186 23.072 23.253 0.012396 11 7 2 0 0 0 0.10247 1 11804 11804 32.786 0 1 2842400 20536 982 13992 14256 24282 24282 0.03823992020318201 HPRSPTPTL 9 Unmodified _HPRSPTPTL_ 0 0 0 ENSG00000068489|ENST00000262293|PRR11 ENSG00000068489|ENST00000262293|PRR11 ENSG00000068489|ENST00000262293|PRR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.27734375 2 503.277441 1004.54033 -0.11921 -5.9994E-05 0.38303 0.00019277 0.26382 0.00013278 503.2776052035634 25.643 0.45349 22.692 22.414 22.868 -2.9511 53 25 3 0 0 0 0.025842 1 14099 14099 57.722 9.9733 1 15011000 20537 982 13992 14256 24283 24283 0.03823992020318201 HPRSQIDIY 9 Unmodified _HPRSQIDIY_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.795166015625 2 564.793455 1127.57236 -0.31265 -0.00017659 -0.64551 -0.00036458 -0.95816 -0.00054117 564.7930419254122 29.764 0.20553 29.764 29.662 29.867 0 18 12 2 0 0 0 0.023481 1 15417 15417 60.074 14.053 1 5315300 20538 8779 13993 14257 24284 24284 0.0136735970349946 HPRSQIDIY 9 Unmodified _HPRSQIDIY_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2954711914062 2 564.793455 1127.57236 0.68787 0.0003885 0.2591 0.00014634 0.94697 0.00053484 564.7935629542186 32.869 0.28223 29.012 28.832 29.115 -3.8562 27 15 2 0 0 0 0.014417 1 18729 18729 69.105 29.148 1 16717000 20539 8779 13993 14257 24285 24285 0.0136735970349946 HPRTFLSKI 9 Unmodified _HPRTFLSKI_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8884887695312 3 366.885464 1097.63456 -0.22275 -8.1722E-05 2.6155 0.0009596 2.3928 0.00087787 366.8867446010143 31.026 0.22892 31.056 30.97 31.199 0.030106 21 9 3 0 0 0 0.14594 1 16239 16239 28.495 4.6934 1 1683200 20540 6274 13994 14258 24286 24286 0.08965130842443614 HPRVFMSFR 9 Unmodified _HPRVFMSFR_ 0 0 0 REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2254028320312 3 392.874682 1175.60222 -0.092814 -3.6464E-05 1.2758 0.00050121 1.1829 0.00046475 392.8751514246304 38.066 0.40593 38.083 37.859 38.265 0.01704 24 18 2 0 0 0 0.21572 1 20269 20269 4.5289 1.5336 1 1208900 + 20541 27669 13995 14259 24287 24287 0.02144020167816052 HPRVGDLIL 9 Unmodified _HPRVGDLIL_ 0 0 0 nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1 nc|ENSG00000119392|Q53GS7-2|GLE1 nc|ENSG00000119392|Q53GS7-2|GLE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3040161132812 2 510.303458 1018.59236 0.26515 0.00013531 0.29348 0.00014976 0.55863 0.00028507 510.303853230348 49.121 0.40777 48.75 48.597 49.005 -0.37172 42 19 3 0 0 0 0.07087 1 26364 26364 39.95 10.868 1 7324900 20542 3428 13996 14260 24288 24288 0.08381155434108223 HPRVGRRRR 9 Unmodified _HPRVGRRRR_ 0 0 0 ENST00000597790.5_1_19:50879837-50880852:+|nuORF ENST00000597790.5_1_19:50879837-50880852:+|nuORF ENST00000597790.5_1_19:50879837-50880852:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 595.3684692382812 2 595.366113 1188.71767 NaN NaN NaN NaN NaN NaN NaN 105.08 1 98.9 98.4 99.4 -6.1757 0 0 0 0.85737 1 70369 70369 0.6015 0 1 20543 15777 13997 14261 24289 24289 0.13086305133674614 HPRWEENCEEE 11 Unmodified _HPRWEENCEEE_ 0 0 0 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 ENSG00000161860|ENST00000293695|SYCE2 MSMS AL20221201_MKP_PDAC_01 4 486.5291137695312 3 486.529857 1456.56774 NaN NaN NaN NaN NaN NaN NaN 47.283 1 42.203 41.703 42.703 -5.0805 0 0 0 0.93984 1 29331 29331 2.6312 0 1 20544 6812 13998 14262 24290 24290 -0.14227937292230308 HPRWPLPLR 9 Unmodified _HPRWPLPLR_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2340393066406 3 391.233087 1170.67743 0.70306 0.00027506 0.84614 0.00033104 1.5492 0.0006061 391.23331845343023 70.536 0.27639 70.571 70.401 70.678 0.035507 25 12 3 0 0 0 0.58865 1 38854 38854 1.0715 0 1 1607200 + 20545 23101 13999 14263 24291 24291 0.09891945690537796 HPSANCDPFS 10 Unmodified _HPSANCDPFS_ 0 0 0 ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF ENST00000324731.7_1_9:34917810-34918290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7193603515625 2 537.719098 1073.42364 0.78028 0.00041957 -0.60101 -0.00032318 0.17927 9.6397E-05 537.7190065069115 54.142 0.58561 54.142 53.876 54.462 0 142 26 9 0 0 0 0.69377 2 30011 30011;30116 3.5965 3.5965 1 192740000 20546 11803 14000 14264 24292;24293 24292 -0.11013114261754708 HPSASYNQL 9 Unmodified _HPSASYNQL_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7429504394531 2 508.743431 1015.47231 -0.2055 -0.00010454 -0.63117 -0.0003211 -0.83666 -0.00042565 508.74311482028645 26.129 0.25669 26.129 26.026 26.283 0 24 14 2 0 0 0 0.019303 1 13407 13407 64.236 30.134 1 3445700 20547 8170 14001 14265 24294 24294 -0.0348087763032936 HPSATRIFVGL 11 Unmodified _HPSATRIFVGL_ 0 0 0 ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8963317871094 3 399.89614 1196.66659 0.048095 1.9233E-05 -0.45063 -0.00018021 -0.40254 -0.00016097 399.89605543733774 53.096 0.39843 53.032 52.863 53.262 -0.063423 37 19 3 0 0 0 0.44612 1 28766 28766 19.144 2.8694 1 2832900 20548 6091 14002 14266 24295 24295 0.07612498525600131 HPSCYFSYY 9 Unmodified _HPSCYFSYY_ 0 0 0 REV__ADIPOR1|p.Q233H|1|0.2|ENSG00000159346|chr1:202943864-202943864|C/A|missense_variant REV__ADIPOR1|p.Q233H|1|0.2|ENSG00000159346|chr1:202943864-202943864|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2547607421875 3 389.491904 1165.45388 0.080166 3.1224E-05 0.47876 0.00018647 0.55892 0.0002177 389.4919155404069 39.562 0.21311 39.562 39.448 39.661 0 10 9 2 0 0 0 0.21889 1 21220 21220 0.26902 0.1097 1 1447400 + 20549 16703 14003 14267 24296 24296 -0.12222755596553725 HPSDHENIQAF 11 Unmodified _HPSDHENIQAF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.1985778808594 3 432.198548 1293.57381 -0.44294 -0.00019144 0.26071 0.00011268 -0.18223 -7.8758E-05 432.1986927958061 28.804 0.28144 28.804 28.662 28.943 0 34 13 3 0 0 0 0.15252 1 14878 14878 36.395 31.989 1 12828000 20550 8296;16388 14004 14268 24297 24297 -0.06123050998439794 HPSDHENIQAF 11 Unmodified _HPSDHENIQAF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.7926635742188 2 647.794183 1293.57381 -0.64624 -0.00041863 0.44065 0.00028545 -0.20559 -0.00013318 647.7941518467165 28.811 0.16015 28.811 28.723 28.883 0 14 7 2 0 0 0 0.53099 1 14893 14893 23.79 10.747 1 2445400 20551 8296;16388 14004 14268 24298 24298 -0.06123050998439794 HPSDHENIQAF 11 Unmodified _HPSDHENIQAF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.1990051269531 3 432.198548 1293.57381 0.77997 0.0003371 0.28609 0.00012365 1.0661 0.00046075 432.1986797054662 31.833 0.30532 28.137 28.016 28.322 -3.6958 39 16 3 0 0 0 0.17474 1 18040 18040 33.821 24.277 1 29405000 20552 8296;16388 14004 14268 24299 24299 -0.06123050998439794 HPSDHENIQAF 11 Unmodified _HPSDHENIQAF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.796142578125 2 647.794183 1293.57381 0.5725 0.00037086 -0.10433 -6.7582E-05 0.46817 0.00030328 648.2950212081171 31.818 0.21096 28.122 28.035 28.246 -3.6958 18 11 2 0 0 0 0.074411 1 18135 18135 63.227 36.959 1 9764100 20553 8296;16388 14004 14268 24300 24300 -0.06123050998439794 HPSDIEVDL 9 Unmodified _HPSDIEVDL_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7507934570312 2 512.750921 1023.48729 0.29269 0.00015008 0.049381 2.532E-05 0.34207 0.0001754 512.7509113365255 47.15 0.44363 47.15 46.941 47.384 0 52 20 3 0 0 0 0.010877 2 25753 25753;25861 77.984 34.126 1 38077000 20554 7522 14005 14269 24301;24302 24301 -0.023514305530056845 HPSDIEVDL 9 Unmodified _HPSDIEVDL_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.750244140625 2 512.750921 1023.48729 0.4685 0.00024022 -0.46086 -0.00023631 0.0076346 3.9147E-06 512.750415782964 53.244 0.47741 47.44 47.216 47.693 -5.8042 69 29 3 0 0 0 0.010877 2 33566 33566;33696 77.984 41.857 1 81239000 20555 7522 14005 14269 24303;24304 24303 -0.023514305530056845 HPSDLTIAL 9 Unmodified _HPSDLTIAL_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7667236328125 2 483.766374 965.518196 1.6436 0.00079512 0.71759 0.00034715 2.3612 0.0011423 483.7669577280595 62.492 0.31777 56.317 56.104 56.422 -6.1757 22 16 2 0 0 0 0.023164 1 40345 40345 60.39 9.5345 1 13493000 20556 4640 14006 14270 24305 24305 0.03405767551885219 HPSEAHILF 9 Unmodified _HPSEAHILF_ 0 0 0 ENSG00000066248|ENST00000264051|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;nc|ENSG00000066248|Q8N5V2-2|NGEF ENSG00000066248|ENST00000264051|NGEF ENSG00000066248|ENST00000264051|NGEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.77197265625 2 525.771991 1049.52943 0.76667 0.00040309 -0.6004 -0.00031567 0.16627 8.742E-05 526.2733045299531 43.106 0.29407 43.106 42.928 43.222 0 23 14 2 0 0 0 0.1685 1 23362 23362 36.044 14.298 1 28603000 20557 931 14007 14271 24306 24306 0.006645896460213407 HPSEAHILF 9 Unmodified _HPSEAHILF_ 0 0 0 ENSG00000066248|ENST00000264051|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;nc|ENSG00000066248|Q8N5V2-2|NGEF ENSG00000066248|ENST00000264051|NGEF ENSG00000066248|ENST00000264051|NGEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7702026367188 2 525.771991 1049.52943 0.085253 4.4824E-05 -1.4311 -0.00075246 -1.3459 -0.00070763 525.7714816205018 43.18 0.22971 42.869 42.759 42.989 -0.31039 20 10 3 0 0 0 0.07087 1 22987 22987 44.407 15.92 1 7066000 20558 931 14007 14271 24307 24307 0.006645896460213407 HPSEAHILF 9 Unmodified _HPSEAHILF_ 0 0 0 ENSG00000066248|ENST00000264051|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;nc|ENSG00000066248|Q8N5V2-2|NGEF ENSG00000066248|ENST00000264051|NGEF ENSG00000066248|ENST00000264051|NGEF MSMS AL20221201_MKP_PDAC_01 4 525.771240234375 2 525.771991 1049.52943 NaN NaN NaN NaN NaN NaN NaN 46.714 1 41.634 41.134 42.134 -5.0805 0 0 0 0.12343 1 28908 28908 44.407 10.22 1 20559 931 14007 14271 24308 24308 0.006645896460213407 HPSEGGQVL 9 Unmodified _HPSEGGQVL_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;ENST00000552138.5_1_14:105821400-105836438:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.233642578125 2 462.232699 922.450845 -0.091216 -4.2163E-05 1.5789 0.00072981 1.4877 0.00068764 462.2334379430064 25.41 0.55721 22.527 22.282 22.84 -2.8831 57 32 3 0 0 0 0.070838 2 13914 13802;13914 39.957 11.47 1 5069500 20560 8832 14008 14272 24309;24310 24310 -0.013482626590416658 HPSEKALIVHY 11 Unmodified _HPSEKALIVHY_ 0 0 0 ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2387390136719 3 431.903183 1292.68772 0.64237 0.00027744 2.5372 0.0010958 3.1795 0.0013732 431.9050353822994 29.973 0.18248 29.893 29.792 29.975 -0.080431 17 6 3 0 0 0 0.60863 1 15551 15551 10.899 7.0226 1 3593100 20561 1175 14009 14273 24311 24311 0.05308463834489885 HPSEKALIVHY 11 Unmodified _HPSEKALIVHY_ 0 0 0 ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MSMS AL20221201_MKP_PDAC_01 4 431.9039611816406 3 431.903183 1292.68772 NaN NaN NaN NaN NaN NaN NaN 33.104 1 29.248 28.748 29.748 -3.8562 0 0 0 0.082954 1 18955 18955 53.47 41.838 1 20562 1175 14009 14273 24312 24312 0.05308463834489885 HPSEKALIVHY 11 Unmodified _HPSEKALIVHY_ 0 0 0 ENSG00000075945|ENST00000361580|KIFAP3;ENST00000538366.5_1_1:170010937-170043656:-|nuORF ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 431.903183 1292.68772 -0.54844 -0.00023687 2.1859 0.0009441 1.6375 0.00070723 431.904638270684 29.982 0.16845 29.982 29.888 30.057 0 0.04446 -0.00023128 NaN 10.899 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1283100 20563 1175 14009 14273 0.05308463834489885 HPSELIAEM 9 Oxidation (M) _HPSELIAEM(Oxidation (M))_ HPSELIAEM(1) HPSELIAEM(97) 0 0 1 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.74755859375 2 521.747324 1041.4801 -0.11084 -5.7833E-05 1.9173 0.0010004 1.8065 0.00094252 521.7473960771995 28.971 0.34127 28.971 28.82 29.161 0 29 16 2 0 0 0 0.0083087 2 14959 14959;15059 97.075 40.898 1 6619800 20564 5053 14010 14274 24313;24314 24313 923 -0.03898486425077863 HPSELIAEM 9 Unmodified _HPSELIAEM_ 0 0 0 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7493896484375 2 513.749867 1025.48518 0.70818 0.00036383 -0.28564 -0.00014675 0.42254 0.00021708 513.7500022895447 52.476 0.27632 46.742 46.598 46.874 -5.7345 23 14 2 0 0 0 0.010877 1 33098 33098 77.984 38.035 1 27542000 20565 5053 14010 14275 24315 24315 -0.026541825624462945 HPSERSFEL 9 Unmodified _HPSERSFEL_ 0 0 0 nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.27001953125 2 551.269813 1100.52507 -0.12932 -7.1289E-05 0.67226 0.0003706 0.54294 0.00029931 551.2702084069653 33.347 0.26749 33.347 33.166 33.434 0 41 13 4 0 0 0 0.10247 2 17417 17417;17535 32.786 8.7651 1 20405000 20566 6425 14011 14276 24316;24317 24316 -0.021169195675156516 HPSERSFEL 9 Unmodified _HPSERSFEL_ 0 0 0 nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2698364257812 2 551.269813 1100.52507 0.7069 0.00038969 0.34222 0.00018865 1.0491 0.00057835 551.269184870611 36.244 0.39715 32.051 31.77 32.168 -4.1928 33 23 2 0 0 0 0.1685 1 21102 21102 26.268 4.5215 1 27321000 20567 6425 14011 14276 24318 24318 -0.021169195675156516 HPSESLEKM 9 Unmodified _HPSESLEKM_ 0 0 0 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 ENSG00000182378|ENST00000381657|PLCXD1 MSMS AL20221201_MKP_PDAC_01 4 529.25341796875 2 529.252774 1056.491 NaN NaN NaN NaN NaN NaN NaN 22.04 1 19.305 18.805 19.805 -2.7348 0 0 0 0.083082 1 11839 11839 47.749 20.865 1 20568 9051 14012 14277 24319 24319 -0.034990840507816756 HPSEVDEIF 9 Unmodified _HPSEVDEIF_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;nc|ENSG00000274487|A6NEC2|NPEPPSL1;nc|ENSG00000274487|A6NEC2-2|NPEPPSL1;ENST00000602788.5_1_17:45660176-45669919:+|nuORF;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000525021.1_1_17:45668242-45669919:+|nuORF;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS;ENST00000533538.5_1_17:45664518-45669919:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7510986328125 2 536.750921 1071.48729 0.58772 0.00031546 -0.77914 -0.0004182 -0.19142 -0.00010275 536.7499047892813 49.97 0.44891 49.97 49.56 50.009 0 36 20 3 0 0 0 0.023164 1 27504 27504 60.39 19.941 1 4364800 20569 5311;14939 14013 14278 24320 24320 -0.04559430552990307 HPSFHNINF 9 Unmodified _HPSFHNINF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7662353515625 2 556.76724 1111.51993 0.1744 9.7101E-05 -0.94107 -0.00052396 -0.76667 -0.00042685 556.7666376317304 41.98 0.26662 41.971 41.813 42.08 -0.0088196 19 12 2 0 0 0 0.015445 1 22447 22447 68.081 47.627 1 12661000 20570 2632 14014 14279 24321 24321 -0.031371786394856827 HPSFHNINF 9 Unmodified _HPSFHNINF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5139770507812 3 371.513919 1111.51993 -0.11124 -4.1326E-05 -0.47161 -0.00017521 -0.58285 -0.00021654 371.51372186212575 41.973 0.208 41.964 41.834 42.042 -0.0088196 20 9 3 0 0 0 0.12424 1 22475 22475 22.658 15.556 1 8952600 20571 2632 14014 14279 24322 24322 -0.031371786394856827 HPSFLMCL 8 Unmodified _HPSFLMCL_ 0 0 0 ENST00000397501.5_1_8:27316549-27316885:+|nuORF ENST00000397501.5_1_8:27316549-27316885:+|nuORF ENST00000397501.5_1_8:27316549-27316885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2283935546875 2 474.227516 946.44048 -0.12472 -5.9145E-05 0.16144 7.6561E-05 0.036725 1.7416E-05 474.22769900580334 41.959 0.16828 41.95 41.855 42.023 -0.0088196 10 7 2 0 0 0 0.61462 1 22458 22458 24.674 6.5389 1 4541100 20572 12823 14015 14280 24323 24323 -0.034882849094742596 HPSFPEVSF 9 Unmodified _HPSFPEVSF_ 0 0 0 ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR ENSG00000171105|ENST00000302850|INSR ENSG00000171105|ENST00000302850|INSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7509765625 2 523.750724 1045.4869 0.51568 0.00027009 -0.60386 -0.00031627 -0.08818 -4.6184E-05 523.7505180614816 62.603 0.26707 62.116 61.976 62.243 -0.48764 25 12 3 0 0 0 0.038285 1 34102 34102 50.855 23.971 1 3222000 20573 8062 14016 14281 24324 24324 -0.03402805482187432 HPSFQVKEL 9 Unmodified _HPSFQVKEL_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7919311523438 2 542.792924 1083.57129 -0.19502 -0.00010586 0.35072 0.00019037 0.1557 8.4512E-05 542.7929741686185 37.897 0.23419 37.626 37.485 37.719 -0.27133 16 11 2 0 0 0 0.20428 1 19931 19931 22.736 5.6234 1 2036900 20574 9308 14017 14282 24325 24325 0.032851453345756454 HPSFVMSNSF 10 Oxidation (M) _HPSFVM(Oxidation (M))SNSF_ HPSFVM(1)SNSF HPSFVM(69)SNSF 0 0 1 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32868842-32878296:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7583618164062 2 584.758223 1167.50189 -0.43551 -0.00025467 0.545 0.0003187 0.10949 6.4026E-05 584.7588123334626 41.669 0.27095 41.362 41.283 41.554 -0.30682 23 12 3 0 0 0 0.027759 1 22126 22126 69.105 45.084 1 6739800 20575 1967 14018 14283 24326 24326 335 -0.07515681676500208 HPSFVMSNSF 10 Unmodified _HPSFVMSNSF_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32868842-32878296:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7605590820312 2 576.760766 1151.50698 1.1148 0.000643 0.063374 3.6552E-05 1.1782 0.00067955 576.7608532921689 59.311 0.3858 53.236 53.011 53.397 -6.0745 37 21 2 0 0 0 0.07026 1 37996 37996 71.922 41.286 1 21608000 20576 1967 14018 14284 24327 24327 -0.0627137781386864 HPSFVMSNSF 10 Unmodified _HPSFVMSNSF_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32868842-32878296:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.760766 1151.50698 0.34934 0.00020149 1.7614 0.0010159 2.1107 0.0012174 576.7616934230092 53.176 0.19566 53.113 53.002 53.198 -0.063423 -0.061744 0.0015034 NaN 71.922 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1240900 20577 1967 14018 14284 -0.0627137781386864 HPSGATPTL 9 Unmodified _HPSGATPTL_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7296752929688 2 440.729792 879.445031 -0.29469 -0.00012988 -0.36651 -0.00016153 -0.66119 -0.00029141 440.7294753464618 26.115 0.26256 26.115 25.965 26.228 0 25 14 2 0 0 0 0.023164 1 13377 13377 60.39 9.5345 1 3828300 20578 712 14019 14285 24328 24328 0.00048638829287028784 HPSGDIIIADY 11 Unmodified _HPSGDIIIADY_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7980346679688 2 600.798403 1199.58225 0.012989 7.8039E-06 0.081963 4.9243E-05 0.094952 5.7047E-05 600.7984456511591 37.206 0.33581 37.206 36.997 37.333 0 30 16 2 0 0 0 0.56638 1 19750 19750 13.042 0 1 2103500 20579 2662 14020 14286 24329 24329 -0.009554970817816866 HPSGNMASF 9 Oxidation (M) _HPSGNM(Oxidation (M))ASF_ HPSGNM(1)ASF HPSGNM(48)ASF 0 0 1 nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA nc|ENSG00000186350|P19793-2|RXRA nc|ENSG00000186350|P19793-2|RXRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2042236328125 2 482.203084 962.391615 1.2376 0.00059676 0.14505 6.9944E-05 1.3826 0.0006667 482.2031020040274 20.656 0.46435 17.963 17.646 18.11 -2.693 44 27 2 0 0 0 0.044011 1 10932 10932 47.749 23.728 1 2731000 20580 9472 14021 14287 24330 24330 1559 -0.09108481944883806 HPSGNMASF 9 Unmodified _HPSGNMASF_ 0 0 0 nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA nc|ENSG00000186350|P19793-2|RXRA nc|ENSG00000186350|P19793-2|RXRA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.228759765625 2 474.205627 946.396701 1.0732 0.00050893 1.0636 0.00050437 2.1368 0.0010133 474.20584619877786 32.307 0.22956 28.451 28.319 28.549 -3.8562 24 13 2 0 0 0 0.19758 1 18466 18466 13.042 1.4022 1 7344000 20581 9472 14021 14288 24331 24331 -0.07864178082263606 HPSGTALHY 9 Unmodified _HPSGTALHY_ 0 0 0 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1 ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7406921386719 2 491.740691 981.466829 -0.32024 -0.00015747 0.15345 7.5456E-05 -0.16679 -8.2018E-05 491.7407938114169 20.706 0.22225 20.706 20.589 20.811 0 39 14 3 0 0 0 0.0086179 1 10450 10450 89.427 45.02 1 6885700 20582 9833 14022 14289 24332 24332 -0.02464556422160058 HPSGTALHY 9 Unmodified _HPSGTALHY_ 0 0 0 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1 ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7414245605469 2 491.740691 981.466829 0.32233 0.0001585 -0.061269 -3.0129E-05 0.26106 0.00012837 491.7406156114529 22.684 0.42619 19.906 19.722 20.148 -2.7784 83 30 4 0 0 0 0.0086179 2 12147 12147;12256 89.427 45.02 1 29223000 20583 9833 14022 14289 24333;24334 24333 -0.02464556422160058 HPSGTVVAI 9 Unmodified _HPSGTVVAI_ 0 0 0 ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4 ENST00000406175.3_1_2:42513330-42557344:+|nuORF ENST00000406175.3_1_2:42513330-42557344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7479248046875 2 440.747985 879.481417 0.46235 0.00020378 -0.24168 -0.00010652 0.22068 9.7263E-05 440.74776842212134 36.994 0.26193 36.994 36.897 37.159 0 27 12 3 0 0 0 0.03327 1 19656 19656 53.576 9.1686 1 3430600 20584 5566 14023 14290 24335 24335 0.03685515725987898 HPSHVQPAY 9 Unmodified _HPSHVQPAY_ 0 0 0 nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF;nc|ENSG00000204842|Q99700-4|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2534790039062 2 518.253966 1034.49338 -0.34022 -0.00017632 0.030121 1.561E-05 -0.3101 -0.00016071 518.254009435389 16.809 0.1732 16.809 16.724 16.897 0 109 41 3 0 0 0 0.14602 1 8196 8196 28.487 18.413 1 2592400 20585 10330 14024 14291 24336 24336 -0.02248867530829557 HPSHVQPAY 9 Unmodified _HPSHVQPAY_ 0 0 0 nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF;nc|ENSG00000204842|Q99700-4|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2557373046875 2 518.253966 1034.49338 0.54104 0.0002804 -0.4604 -0.00023861 0.080639 4.1792E-05 518.2537621848738 17.694 0.25434 15.107 14.995 15.249 -2.5866 75 35 3 0 0 0 0.024882 2 9228 9228;9334 58.679 36.627 1 6443000 20586 10330 14024 14291 24337;24338 24337 -0.02248867530829557 HPSIYPSRCL 10 Unmodified _HPSIYPSRCL_ 0 0 0 ENST00000280800.4_1_12:113827935-113828904:+|nuORF ENST00000280800.4_1_12:113827935-113828904:+|nuORF ENST00000280800.4_1_12:113827935-113828904:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2986450195312 2 586.797683 1171.58081 0.15314 8.9861E-05 3.5877 0.0021053 3.7409 0.0021951 587.3000415456368 56.418 0.22641 56.349 56.212 56.438 -0.068737 26 11 3 0 0 0 0.52888 1 30692 30692 14.838 0.25658 1 5634600 20587 11409 14025 14292 24339 24339 0.0018859034844354028 HPSKELLEYY 10 Unmodified _HPSKELLEYY_ 0 0 0 nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77;ENST00000538160.1_1_12:514707-527878:+|nuORF;ENST00000540344.5_1_12:498593-542579:+|nuORF nc|ENSG00000120647|Q9BR77-2|CCDC77 nc|ENSG00000120647|Q9BR77-2|CCDC77 MSMS AL20221201_MKP_PDAC_01 4 639.8225708007812 2 639.821878 1277.6292 NaN NaN NaN NaN NaN NaN NaN 45.437 1 40.482 39.982 40.982 -4.9549 0 0 0 0.68942 1 27893 27893 17.113 1.8644 1 20588 3525 14026 14293 24340 24340 0.0014936246934666997 HPSLFVAFY 9 Unmodified _HPSLFVAFY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14 ENSG00000173193|ENST00000474629|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.778564453125 2 540.779285 1079.54402 0.24486 0.00013242 0.54468 0.00029455 0.78954 0.00042697 540.7790216133154 77.935 0.30969 77.987 77.867 78.177 0.052452 31 12 3 0 0 0 0.036857 1 43020 43020 67.344 31.3 1 3670900 20589 8296 14027 14294 24341 24341 0.0074266179419737455 HPSLHPERHQR 11 Unmodified _HPSLHPERHQR_ 0 0 0 REV__ENST00000553070.5_1_12:54694054-54694665:-|nuORF REV__ENST00000553070.5_1_12:54694054-54694665:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.3622436523438 2 697.363433 1392.71231 NaN NaN NaN NaN NaN NaN NaN 43.846 1 43.531 43.031 44.031 -0.31585 0 0 0 0.93893 1 23343 23343 3.2813 0.28607 1 + 20590 28733 14028 14295 24342 24342 0.031665367605455685 HPSLLLLYM 9 Oxidation (M) _HPSLLLLYM(Oxidation (M))_ HPSLLLLYM(1) HPSLLLLYM(100) 0 0 1 ENSG00000126460|ENST00000246794|PRRG2 ENSG00000126460|ENST00000246794|PRRG2 ENSG00000126460|ENST00000246794|PRRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8043823242188 2 551.801903 1101.58925 1.2232 0.00067494 1.2384 0.00068332 2.4615 0.0013583 551.8026275923663 71.049 0.54832 71.085 70.855 71.403 0.035515 62 24 4 0 0 0 0.0086629 2 39163 39065;39163 101.72 54.801 1 8191700 20591 3950 14029 14296 24343;24344 24344 706 0.04252144265069546 HPSLLLLYM 9 Unmodified _HPSLLLLYM_ 0 0 0 ENSG00000126460|ENST00000246794|PRRG2 ENSG00000126460|ENST00000246794|PRRG2 ENSG00000126460|ENST00000246794|PRRG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.2770385742188 2 543.804445 1085.59434 0.68816 0.00037422 -3.1559 -0.0017162 -2.4678 -0.001342 543.8032602668959 99.953 0.11127 93.777 93.727 93.838 -6.1757 18 7 3 0 0 0 0.18521 1 66750 66750 16.942 4.4107 1 19981000 20592 3950 14029 14297 24345 24345 0.05496448127678377 HPSLPASSL 9 Unmodified _HPSLPASSL_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.7449951171875 2 454.745442 907.476331 -0.10691 -4.8616E-05 0.6816 0.00030995 0.57469 0.00026134 454.7455763225182 38.801 0.19263 38.514 38.415 38.608 -0.28687 12 8 2 0 0 0 0.052168 1 20457 20457 44.407 14.182 1 1077900 20593 6748 14030 14298 24346 24346 0.01889211863363016 HPSLPASSL 9 Unmodified _HPSLPASSL_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7451477050781 2 454.745442 907.476331 0.76605 0.00034836 -0.56069 -0.00025497 0.20536 9.3388E-05 454.7451050263134 43.481 0.60213 38.716 38.618 39.22 -4.7648 45 37 2 0 0 0 0.031062 1 26426 26426 54.774 12.679 1 10843000 20594 6748 14030 14298 24347 24347 0.01889211863363016 HPSLPVIKY 9 Unmodified _HPSLPVIKY_ 0 0 0 ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3082885742188 2 527.30821 1052.60187 0.52185 0.00027518 1.818 0.00095866 2.3399 0.0012338 527.3093916424867 46.73 0.35094 46.393 46.231 46.582 -0.33664 28 17 2 0 0 0 0.033587 1 25027 25027 49.933 28.186 1 3403700 20595 12645 14031 14299 24348 24348 0.07766923719600527 HPSLPVIKY 9 Unmodified _HPSLPVIKY_ 0 0 0 ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3085327148438 2 527.30821 1052.60187 1.0876 0.00057348 0.38416 0.00020257 1.4717 0.00077605 527.3083660916498 46.548 0.48835 46.514 46.224 46.712 -0.033417 57 23 4 0 0 0 0.0082981 2 24952 24952;25052 96.111 63.805 1 17298000 20596 12645 14031 14299 24349;24350 24349 0.07766923719600527 HPSLPVIKY 9 Unmodified _HPSLPVIKY_ 0 0 0 ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF ENST00000389561.6_1_12:132445225-132445345:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2723388671875 2 527.30821 1052.60187 0.83381 0.00043967 -0.34739 -0.00018318 0.48642 0.00025649 527.307932011393 51.417 0.41927 45.768 45.572 45.991 -5.649 50 25 3 0 0 0 0.069627 1 32329 32329 46.021 22.873 1 77723000 20597 12645 14031 14299 24351 24351 0.07766923719600527 HPSLQPEEY 9 Unmodified _HPSLQPEEY_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2564086914062 2 550.256371 1098.49819 0.4486 0.00024685 -0.39794 -0.00021897 0.050658 2.7875E-05 550.2560916681301 31.418 0.36626 31.418 31.234 31.6 0 52 17 4 0 0 0 0.022193 2 16418 16316;16418 61.357 46.519 1 27109000 20598 4713 14032 14300 24352;24353 24353 -0.0471202817871017 HPSLQPEEY 9 Unmodified _HPSLQPEEY_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2568969726562 2 550.256371 1098.49819 1.0979 0.00060415 0.20395 0.00011223 1.3019 0.00071637 550.2562715503918 35.756 0.5357 31.563 31.301 31.837 -4.1928 89 33 4 0 0 0 0.010611 2 20678 20678;20807 78.728 51.844 1 50583000 20599 4713 14032 14300 24354;24355 24354 -0.0471202817871017 HPSLSAPAL 9 Unmodified _HPSLSAPAL_ 0 0 0 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 ENSG00000160741|ENST00000368633|CRTC2 MSMS AL20221201_MKP_PDAC_01 4 446.747314453125 2 446.747985 891.481417 NaN NaN NaN NaN NaN NaN NaN 49.48 1 44.083 43.583 44.583 -5.3961 0 0 0 0.043758 1 30918 30918 60.39 6.814 1 20600 6748 14033 14301 24356 24356 0.031335157259945845 HPSLWCYDVI 10 Unmodified _HPSLWCYDVI_ 0 0 0 REV__ENSG00000205808|ENST00000381883|PLPP6 REV__ENSG00000205808|ENST00000381883|PLPP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7929077148438 2 616.792066 1231.56958 -0.32434 -0.00020005 0.039965 2.465E-05 -0.28438 -0.0001754 616.7921081419872 29.902 0.57002 29.902 29.793 30.363 0 70 29 4 0 0 0 0.60623 1 15490 15490 10.824 0 1 6243700 + 20601 24243 14034 14302 24357 24357 -0.03694231745726029 HPSNARFFTY 10 Unmodified _HPSNARFFTY_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.299072265625 2 620.298904 1238.58326 0.45769 0.00028391 -0.72513 -0.0004498 -0.26744 -0.0001659 620.2983586392014 39.001 0.33383 39.013 38.84 39.174 0.011452 37 15 3 0 0 0 0.10406 2 20734 20734;20836 45.74 25.325 1 6498300 20602 2536 14035 14303 24358;24359 24358 -0.026492379222418094 HPSNARFFTY 10 Unmodified _HPSNARFFTY_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.2994384765625 2 620.298904 1238.58326 0.57213 0.00035489 1.2348 0.00076593 1.8069 0.0011208 620.3000464823048 42.968 0.3884 38.283 38.125 38.514 -4.6846 46 25 3 0 0 0 0.06987 1 25978 25978 53.404 24.322 1 13891000 20603 2536 14035 14303 24360 24360 -0.026492379222418094 HPSNARFFTY 10 Unmodified _HPSNARFFTY_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS AL20221201_MKP_PDAC_01 4 413.8686218261719 3 413.868362 1238.58326 NaN NaN NaN NaN NaN NaN NaN 42.932 1 38.247 37.747 38.747 -4.6846 0 0 0 0.89532 1 26003 26003 4.7159 0 1 20604 2536 14035 14303 24361 24361 -0.026492379222418094 HPSNCICIKF 10 2 Carbamidomethyl (C) _HPSNC(Carbamidomethyl (C))IC(Carbamidomethyl (C))IKF_ HPSNC(1)IC(1)IKF HPSNC(91)IC(91)IKF 0 2 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.302734375 2 638.302275 1274.59 0.89048 0.0005684 -0.93443 -0.00059645 -0.043946 -2.8051E-05 638.302275590028 50.079 0.39322 44.539 44.332 44.725 -5.5391 53 25 3 0 0 0 0.0081376 2 31315 31315;31466 91.085 74.936 1 17953000 20605 735 14036 14304 24362;24363 24362 56;57 -0.03631384357549905 HPSNVLHFF 9 Unmodified _HPSNVLHFF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2805786132812 2 549.279983 1096.54541 0.056988 3.1302E-05 -0.83283 -0.00045746 -0.77584 -0.00042615 549.2788163766688 56.956 0.25401 56.471 56.309 56.563 -0.48554 19 11 2 0 0 0 0.018301 1 30925 30925 65.235 27.059 1 6213800 20606 2240 14037 14305 24364 24364 0.0010029588295310532 HPSNVLHFF 9 Unmodified _HPSNVLHFF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.280029296875 2 549.279983 1096.54541 0.28283 0.00015535 -0.35575 -0.00019541 -0.072923 -4.0055E-05 549.2797932552207 56.6 0.42045 56.532 56.36 56.78 -0.068741 65 20 4 0 0 0 0.0086209 2 30740 30740;30840 89.401 58.132 1 106990000 20607 2240 14037 14305 24365;24366 24365 0.0010029588295310532 HPSNVLHFF 9 Unmodified _HPSNVLHFF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2811889648438 2 549.279983 1096.54541 1.0409 0.00057175 -0.96743 -0.00053139 0.073487 4.0365E-05 549.2796591312687 61.445 0.29606 55.297 55.116 55.412 -6.1478 23 14 2 0 0 0 0.011671 1 39553 39553 75.761 44.492 1 26718000 20608 2240 14037 14305 24367 24367 0.0010029588295310532 HPSNVLHFF 9 Unmodified _HPSNVLHFF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2781372070312 2 549.279983 1096.54541 1.223 0.0006718 -0.30181 -0.00016578 0.92123 0.00050601 549.2798178622969 87.936 0.7494 81.761 81.457 82.206 -6.1757 108 41 4 0 0 0 0.0074135 4 57846 57846;57974;58094;58230 110.67 74.169 1 83893000 20609 2240 14037 14305 24368;24369;24370;24371 24368 0.0010029588295310532 HPSNVLHFF 9 Unmodified _HPSNVLHFF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000595443.5_1_19:39327988-39329682:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5235595703125 3 366.522414 1096.54541 1.9048 0.00069816 -0.26282 -9.6329E-05 1.642 0.00060183 366.52225978340806 87.953 0.58447 81.777 81.512 82.096 -6.1757 42 32 2 0 0 0 0.0077963 3 57932 57932;57966;58088 85.642 65.061 1 18629000 20610 2240 14037 14305 24372;24373;24374 24372 0.0010029588295310532 HPSPLSVY 8 Unmodified _HPSPLSVY_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2356872558594 2 450.23471 898.454868 0.62792 0.00028271 0.21177 9.5346E-05 0.83969 0.00037806 450.234727732518 45.056 0.45185 40.204 39.935 40.387 -4.852 67 29 3 0 0 0 0.21786 1 27450 27450 67.035 26.587 1 51307000 20611 1183 14038 14306 24375 24375 0.001578268346634104 HPSPLSVY 8 Unmodified _HPSPLSVY_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 450.23471 898.454868 0.33011 0.00014863 -0.67155 -0.00030236 -0.34145 -0.00015373 450.23432840033166 40.068 0.1769 40.068 39.912 40.089 0 -0.0094694 -0.00076812 NaN 67.035 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1071600 20612 1183 14038 14306 0.001578268346634104 HPSPLSVY 8 Unmodified _HPSPLSVY_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 450.23471 898.454868 0.35009 0.00015762 0.45307 0.00020399 0.80316 0.00036161 450.2351099745625 40.257 0.251 39.96 39.882 40.133 -0.29716 -0.11726 0.00024457 NaN 67.035 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 839820 20613 1183 14038 14306 0.001578268346634104 HPSPSPPS 8 Unmodified _HPSPSPPS_ 0 0 0 ENST00000369984.4_1_X:153222087-153222168:-|nuORF ENST00000369984.4_1_X:153222087-153222168:-|nuORF ENST00000369984.4_1_X:153222087-153222168:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.1962890625 2 403.195585 804.376617 NaN NaN NaN NaN NaN NaN NaN 44.934 1 40.082 39.582 40.582 -4.852 0 0 0 0.63034 1 27495 27495 32.117 1.8922 1 20614 12320 14039 14307 24376 24376 -0.03339605750568353 HPSPVVLKV 9 Unmodified _HPSPVVLKV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.3036499023438 2 488.302927 974.591301 0.17116 8.3576E-05 1.102 0.00053813 1.2732 0.00062171 488.30365704093094 38.218 0.28153 37.947 37.782 38.064 -0.27133 26 12 3 0 0 0 0.020973 1 20112 20112 62.573 30.267 1 1566200 20615 3242 14040 14308 24377 24377 0.10298941065184408 HPSPVVLKV 9 Unmodified _HPSPVVLKV_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.3037414550781 2 488.302927 974.591301 1.2468 0.0006088 0.17253 8.4247E-05 1.4193 0.00069305 488.30287702563265 41.915 0.37287 37.307 37.127 37.5 -4.6079 40 23 2 0 0 0 0.020973 1 25261 25261 62.573 35.689 1 10603000 20616 3242 14040 14308 24378 24378 0.10298941065184408 HPSPVVLKVY 10 Unmodified _HPSPVVLKVY_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8353271484375 2 569.834591 1137.65463 1.0143 0.00057797 0.074164 4.2261E-05 1.0884 0.00062023 569.8344922577523 47.949 0.20896 42.715 42.599 42.808 -5.2339 15 12 2 0 0 0 0.04848 1 29866 29866 60.074 48.434 1 6597100 20617 3242 14041 14309 24379 24379 0.09130881782425604 HPSQHVMQY 9 Unmodified _HPSQHVMQY_ 0 0 0 nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1747131347656 3 376.174797 1125.50256 1.6769 0.00063081 -0.39076 -0.000147 1.2861 0.00048381 376.1744774022394 21.666 0.39695 18.931 18.725 19.122 -2.7348 39 25 3 0 0 0 0.20428 1 11594 11594 16.566 14.283 1 4895400 20618 1768 14042 14310 24380 24380 -0.05516842236784214 HPSQHVMQY 9 Unmodified _HPSQHVMQY_ 0 0 0 nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7583618164062 2 563.758558 1125.50256 1.3507 0.00076146 0.073285 4.1315E-05 1.424 0.00080277 563.7586249023551 21.679 0.27205 18.944 18.8 19.072 -2.7348 36 14 3 0 0 0 0.023481 1 11595 11595 60.074 45.492 1 5595400 20619 1768 14042 14310 24381 24381 -0.05516842236784214 HPSQHVMQY 9 Unmodified _HPSQHVMQY_ 0 0 0 nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 MSMS AL20221201_MKP_PDAC_01 4 563.7603149414062 2 563.758558 1125.50256 NaN NaN NaN NaN NaN NaN NaN 21.805 1 19.07 18.57 19.57 -2.7348 0 0 0 0.34649 1 11701 11701 22.736 14.143 1 20620 1768 14042 14310 24382 24382 -0.05516842236784214 HPSQIQEFY 9 Unmodified _HPSQIQEFY_ 0 0 0 ENSG00000120068|ENST00000239144|HOXB8 ENSG00000120068|ENST00000239144|HOXB8 ENSG00000120068|ENST00000239144|HOXB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7734375 2 574.772188 1147.52982 0.54419 0.00031279 0.70753 0.00040667 1.2517 0.00071945 574.7725787123017 46.402 0.25021 41.321 41.143 41.393 -5.0805 28 17 2 0 0 0 0.013041 1 28612 28612 71.922 41.697 1 18173000 20621 3494 14043 14311 24383 24383 -0.03804035424764152 HPSQQVPGS 9 Unmodified _HPSQQVPGS_ 0 0 0 REV__nc|ENSG00000146576|Q96N11-2|INTS15 REV__nc|ENSG00000146576|Q96N11-2|INTS15 MSMS AL20221201_MKP_PDAC_01 4 468.7297973632812 2 468.730323 935.446094 NaN NaN NaN NaN NaN NaN NaN 23.466 1 20.647 20.147 21.147 -2.8198 0 0 0 0.56093 1 12703 12703 13.906 0.86358 1 + 20622 20842 14044 14312 24384 24384 -0.024211468017938387 HPSQTVELF 9 Unmodified _HPSQTVELF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2683715820312 2 529.269281 1056.52401 NaN NaN NaN NaN NaN NaN NaN 50.814 1 50.4 49.9 50.9 -0.41351 0 0 0 0.26013 1 27374 27374 36.127 3.8215 1 20623 9805 14045 14313 24385 24385 -0.0019913393641672883 HPSQTVRKAL 10 Unmodified _HPSQTVRKAL_ 0 0 0 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1;nc|ENSG00000124831|Q32MZ4-2|LRRFIP1;nc|ENSG00000124831|Q32MZ4|LRRFIP1 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1 nc|ENSG00000124831|Q32MZ4-3|LRRFIP1 MSMS AL20221201_MKP_PDAC_01 4 379.5560302734375 3 379.556007 1135.64619 NaN NaN NaN NaN NaN NaN NaN 15.641 1 13.113 12.613 13.613 -2.5273 0 0 0 0.96104 1 8044 8044 7.4771 2.5801 1 20624 16170 14046 14314 24386 24386 0.08379327865804953 HPSSSVVIY 9 Unmodified _HPSSSVVIY_ 0 0 0 ENST00000420613.6_1_12:49073557-49075333:-|nuORF ENST00000420613.6_1_12:49073557-49075333:-|nuORF ENST00000420613.6_1_12:49073557-49075333:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7590637207031 2 494.758549 987.502546 0.66192 0.00032749 3.526 0.0017445 4.1879 0.002072 494.75847853943793 36.634 0.44605 36.634 36.35 36.796 0 56 21 4 0 0 0 0.03327 1 19486 19486 53.576 13.618 1 17229000 20625 13100 14047 14315 24387 24387 0.008294810348502324 HPSVDSSVL 9 Unmodified _HPSVDSSVL_ 0 0 0 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7724914550781 2 470.740357 939.46616 0.43395 0.00020428 0.32475 0.00015287 0.75869 0.00035715 470.74034571173587 35.985 0.21682 35.985 35.858 36.074 0 15 10 2 0 0 0 0.19613 1 19024 19024 12.532 5.2423 1 1887600 20626 4557 14048 14316 24388 24388 -0.005993958618546458 HPSVIDPLM 9 Oxidation (M) _HPSVIDPLM(Oxidation (M))_ HPSVIDPLM(1) HPSVIDPLM(60) 0 0 1 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.760498046875 2 512.760235 1023.50592 0.48552 0.00024895 0.043709 2.2412E-05 0.52923 0.00027137 512.7601149379166 48.023 0.35984 48.023 47.789 48.149 0 27 17 2 0 0 0 0.023164 1 26304 26304 60.39 34.99 1 2116000 20627 6097 14049 14317 24389 24389 1086 -0.004895921827710481 HPSVLKYEK 9 Unmodified _HPSVLKYEK_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5418701171875 3 367.541475 1099.60259 0.34139 0.00012547 0.30423 0.00011182 0.64562 0.00023729 367.5416238820637 40.18 0.38304 39.883 39.69 40.073 -0.29716 51 17 4 0 0 0 0.32871 1 21299 21299 10.8 2.8541 1 13137000 20628 3760 14050 14318 24390 24390 0.05677718368656315 HPSVSLQQY 9 Unmodified _HPSVSLQQY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.76806640625 2 529.766906 1057.51926 -0.29092 -0.00015412 2.3324 0.0012356 2.0414 0.0010815 529.7683947392813 34.616 0.21713 34.616 34.478 34.695 0 19 10 2 0 0 0 0.0095811 1 18232 18232 81.613 39.519 1 3517700 20629 3181 14051 14319 24391 24391 -0.007200180791642197 HPSVSLQQY 9 Unmodified _HPSVSLQQY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2857055664062 2 529.766906 1057.51926 0.88008 0.00046623 -0.92917 -0.00049224 -0.049093 -2.6008E-05 529.7660589887926 39.11 0.38785 34.66 34.488 34.876 -4.4509 41 24 2 0 0 0 0.047927 1 23214 23214 54.774 14.816 1 14232000 20630 3181 14051 14319 24392 24392 -0.007200180791642197 HPSVSLQQY 9 Unmodified _HPSVSLQQY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 529.766906 1057.51926 -0.35906 -0.00019022 -0.17502 -9.2717E-05 -0.53407 -0.00028293 529.7666101391756 34.728 0.17178 34.537 34.46 34.631 -0.19132 -0.067128 -0.00021759 NaN 81.613 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1334500 20631 3181 14051 14319 -0.007200180791642197 HPSVVPGSIAF 11 Unmodified _HPSVVPGSIAF_ 0 0 0 ENSG00000073969|ENST00000398238|NSF;ENST00000486366.1_1_17:44668129-44707830:+|nuORF ENSG00000073969|ENST00000398238|NSF ENSG00000073969|ENST00000398238|NSF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8004150390625 2 555.800749 1109.58694 0.33468 0.00018602 -0.9831 -0.00054641 -0.64842 -0.00036039 555.8000991182337 60.067 0.20149 59.577 59.545 59.746 -0.49079 17 9 2 0 0 0 0.017265 1 32739 32739 60.074 39.62 1 6691800 20632 1118 14052 14320 24393 24393 0.0365343185162601 HPSVVPGSIAF 11 Unmodified _HPSVVPGSIAF_ 0 0 0 ENSG00000073969|ENST00000398238|NSF;ENST00000486366.1_1_17:44668129-44707830:+|nuORF ENSG00000073969|ENST00000398238|NSF ENSG00000073969|ENST00000398238|NSF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8005981445312 2 555.800749 1109.58694 0.49434 0.00027476 -0.57574 -0.00032 -0.081398 -4.5241E-05 555.8006187400133 59.748 0.34076 59.694 59.535 59.875 -0.053059 37 16 3 0 0 0 0.0011251 1 32550 32550 81.89 45.763 1 7721100 20633 1118 14052 14320 24394 24394 0.0365343185162601 HPSWHVQFI 9 Unmodified _HPSWHVQFI_ 0 0 0 REV__ENSG00000102054|ENST00000380087|RBBP7 REV__ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7933959960938 2 575.793258 1149.57196 0.37067 0.00021343 0.82356 0.0004742 1.1942 0.00068763 575.7932304296595 94.675 0.68504 94.675 94.387 95.072 0 137 61 3 0 0 0 0.54444 1 52281 52281 4.756 0 1 1096400 + 20634 18218 14053 14321 24395 24395 0.00315984774260869 HPSYHTDGFN 10 Unmodified _HPSYHTDGFN_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1686401367188 3 392.168588 1173.48394 NaN NaN NaN NaN NaN NaN NaN 19.968 1 19.968 19.468 20.468 0 0 0 0 0.98857 1 10022 10022 1.9064 0.25375 1 20635 1920 14054 14322 24396 24396 -0.09586680607003473 HPTAANILF 9 Unmodified _HPTAANILF_ 0 0 0 ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2687377929688 2 492.269084 982.523616 0.63203 0.00031113 -1.0277 -0.00050593 -0.39571 -0.0001948 492.2685271107133 57.499 0.41066 57.009 56.816 57.226 -0.48974 47 19 3 0 0 0 0.0095811 2 31202 31202;31298 81.613 24.142 1 17492000 20636 2459 14055 14323 24397;24398 24397 0.03165491134370768 HPTAANILF 9 Unmodified _HPTAANILF_ 0 0 0 ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2693786621094 2 492.269084 982.523616 1.0005 0.00049252 -0.33593 -0.00016537 0.66457 0.00032715 492.2689939945445 57.107 0.57813 57.041 56.898 57.476 -0.066036 42 28 3 0 0 0 0.010818 1 31066 31066 78.149 29.804 1 5574500 20637 2459 14055 14323 24399 24399 0.03165491134370768 HPTADVQTF 9 Unmodified _HPTADVQTF_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2461547851562 2 508.245806 1014.47706 0.15154 7.7019E-05 0.021039 1.0693E-05 0.17258 8.7711E-05 508.245732892727 31.054 0.28161 31.054 30.932 31.214 0 35 13 4 0 0 0 0.015445 1 16141 16141 68.081 22.06 1 8663100 20638 16032 14056 14324 24400 24400 -0.029599934875705003 HPTADVQTF 9 Unmodified _HPTADVQTF_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2452392578125 2 508.245806 1014.47706 0.63917 0.00032485 -0.73544 -0.00037378 -0.096271 -4.893E-05 508.24538688408643 35.178 0.38046 31.082 30.935 31.316 -4.0951 43 22 2 0 0 0 0.019303 1 20407 20407 64.236 18.215 1 22171000 20639 16032 14056 14324 24401 24401 -0.029599934875705003 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7643432617188 2 510.761092 1019.50763 0.36256 0.00018518 -0.50043 -0.0002556 -0.13787 -7.0416E-05 510.76066445009144 49.117 0.28398 49.117 48.952 49.236 0 38 13 4 0 0 0 0.038285 1 26950 26950 50.855 22.368 1 33963000 20640 7756 14057 14325 24402 24402 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7634887695312 2 510.761092 1019.50763 0.49274 0.00025167 -0.7511 -0.00038363 -0.25835 -0.00013196 510.76065277779514 49.473 0.94918 49.08 48.902 49.851 -0.3923 128 47 6 0 0 0 0.016184 4 26535 26535;26640;26783;26981 67.344 38.857 1 865460000 20641 7756 14057 14325 24403;24404;24405;24406 24403 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7640991210938 2 510.761092 1019.50763 0.64387 0.00032887 0.65775 0.00033595 1.3016 0.00066482 510.76136900312116 49.125 0.60994 49.082 48.887 49.497 -0.04369 80 29 5 0 0 0 0.012148 2 26476 26476;26582 74.423 38.379 1 79316000 20642 7756 14057 14325 24407;24408 24407 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7638854980469 2 510.761092 1019.50763 0.72412 0.00036985 0.63194 0.00032277 1.3561 0.00069263 510.76121576945656 54.805 0.80745 48.94 48.641 49.449 -5.8653 203 50 5 0 0 0 0.016184 4 34651 34651;34786;34916;35057 67.344 38.857 1 2536200000 20643 7756 14057 14325 24409;24410;24411;24412 24409 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7608642578125 2 510.761092 1019.50763 0.96436 0.00049256 0.81297 0.00041523 1.7773 0.00090779 510.7613696732011 55.499 0.21041 49.578 49.393 49.603 -5.9211 22 12 2 0 0 0 0.012148 2 35265 35230;35265 74.423 40.235 1 21479000 20644 7756 14057 14325 24413;24414 24414 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1020.052978515625 1 1020.51491 1019.50763 0.70822 0.00072275 -0.59212 -0.00060427 0.11609 0.00011848 1020.5130097241981 54.827 0.5832 48.962 48.713 49.296 -5.8653 112 35 4 0 0 0 0.094631 1 35083 35083 39.957 21.822 1 185130000 20645 7756 14057 14325 24415 24415 -0.001342151025255589 HPTAFVVSY 9 Unmodified _HPTAFVVSY_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1020.51491 1019.50763 0.57323 0.00058499 -1.8442 -0.0018821 -1.271 -0.0012971 1020.5122668659009 49.464 0.23464 49.071 48.964 49.198 -0.3923 0.054805 -0.0010421 NaN 39.957 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 8227600 20646 7756 14057 14325 -0.001342151025255589 HPTAHAPMM 9 Unmodified _HPTAHAPMM_ 0 0 0 nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000484991.1_1_12:111890618-111891658:-|nuORF;ENST00000482777.5_1_12:111891376-111891658:-|nuORF nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 MSMS AL20221201_MKP_PDAC_01 4 496.7281188964844 2 496.725672 991.436791 NaN NaN NaN NaN NaN NaN NaN 24.637 1 21.754 21.254 22.254 -2.8831 0 0 0 0.10545 1 13428 13428 42.095 25.152 1 20647 10330 14058 14326 24416 24416 -0.059269546833434106 HPTCSFDITY 10 Carbamidomethyl (C) _HPTC(Carbamidomethyl (C))SFDITY_ HPTC(1)SFDITY HPTC(46)SFDITY 0 1 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-3|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.7686767578125 2 620.768788 1239.52302 0.79141 0.00049128 -0.11888 -7.38E-05 0.67252 0.00041748 620.7684250917564 49.627 0.27625 49.235 49.077 49.353 -0.3923 29 13 3 0 0 0 0.1028 1 26680 26680 46.021 34.381 1 3879900 20648 7609 14059 14327 24417 24417 736 -0.08715716367646564 HPTDDTTTL 9 Unmodified _HPTDDTTTL_ 0 0 0 ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5;ENSG00000089327|ENST00000392219|FXYD5 ENST00000591716.6_1_19:35651643-35657154:+|nuORF ENST00000591716.6_1_19:35651643-35657154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7326965332031 2 500.732729 999.450904 -0.10144 -5.0793E-05 -0.5178 -0.00025928 -0.61924 -0.00031007 500.7325396447325 21.064 0.62633 21.064 20.671 21.297 0 293 95 4 0 0 0 0.016184 3 10447 10447;10544;10648 67.344 44.195 1 21858000 20649 1528 14060 14328 24418;24419;24420 24418 -0.04884307449719927 HPTDDTTTL 9 Unmodified _HPTDDTTTL_ 0 0 0 ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5;ENSG00000089327|ENST00000392219|FXYD5 ENST00000591716.6_1_19:35651643-35657154:+|nuORF ENST00000591716.6_1_19:35651643-35657154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7313537597656 2 500.732729 999.450904 0.13355 6.6874E-05 -0.08265 -4.1386E-05 0.050903 2.5489E-05 500.73262442209693 20.891 0.25429 20.902 20.759 21.013 0.010553 26 15 2 0 0 0 0.038285 1 10640 10640 50.855 33.913 1 2459700 20650 1528 14060 14328 24421 24421 -0.04884307449719927 HPTDDTTTL 9 Unmodified _HPTDDTTTL_ 0 0 0 ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5;ENSG00000089327|ENST00000392219|FXYD5 ENST00000591716.6_1_19:35651643-35657154:+|nuORF ENST00000591716.6_1_19:35651643-35657154:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7331848144531 2 500.732729 999.450904 NaN NaN NaN NaN NaN NaN NaN 21.02 1 21.031 20.531 21.531 0.010553 0 0 0 0.33856 1 10740 10740 23.148 10.617 1 20651 1528 14060 14328 24422 24422 -0.04884307449719927 HPTDDTTTL 9 Unmodified _HPTDDTTTL_ 0 0 0 ENST00000591716.6_1_19:35651643-35657154:+|nuORF;nc|ENSG00000089327|Q96DB9-2|FXYD5;ENSG00000089327|ENST00000392219|FXYD5 ENST00000591716.6_1_19:35651643-35657154:+|nuORF ENST00000591716.6_1_19:35651643-35657154:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7330017089844 2 500.732729 999.450904 0.32709 0.00016378 -1.799 -0.00090082 -1.4719 -0.00073704 500.7328891923088 23.851 0.76061 21.023 20.563 21.323 -2.8273 161 44 5 0 0 0 0.016184 4 12954 12835;12839;12954;13077 67.344 26.895 1 61308000 20652 1528 14060 14328 24423;24424;24425;24426 24425 -0.04884307449719927 HPTDERVAL 9 Unmodified _HPTDERVAL_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2720336914062 2 519.272355 1036.53016 -0.12091 -6.2783E-05 -0.11068 -5.7472E-05 -0.23158 -0.00012026 519.2723446177714 24.631 0.27006 24.631 24.49 24.76 0 41 15 3 0 0 0 0.078314 1 12581 12581 38.176 9.094 1 4850300 20653 3174 14061 14329 24427 24427 0.013353842950891703 HPTDERVAL 9 Unmodified _HPTDERVAL_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU;nc|ENSG00000115919|Q16719-2|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2734375 2 519.272355 1036.53016 0.54857 0.00028486 -1.6784 -0.00087156 -1.1299 -0.0005867 519.2717238040576 27.253 0.37542 24.216 24.04 24.416 -3.0365 32 18 2 0 0 0 0.032796 2 15034 15034;15151 53.833 17.706 1 23695000 20654 3174 14061 14329 24428;24429 24428 0.013353842950891703 HPTDITSLDQY 11 Unmodified _HPTDITSLDQY_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8056030273438 2 645.304049 1288.59355 -0.31825 -0.00020537 0.32435 0.0002093 0.0061001 3.9364E-06 645.304474108042 44.375 0.246 44.375 44.246 44.492 0 29 12 3 0 0 0 1.3587E-06 1 24127 24127 103.35 78.363 1 22359000 20655 7515 14062 14330 24430 24430 -0.039207197783071024 HPTDITSLDQY 11 Unmodified _HPTDITSLDQY_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3046264648438 2 645.304049 1288.59355 0.91266 0.00058894 0.091059 5.8761E-05 1.0037 0.0006477 645.3039459146554 50.946 0.42385 45.297 45.071 45.494 -5.649 55 25 3 0 0 0 2.9966E-06 1 32029 32029 99.755 74.764 1 75985000 20656 7515 14062 14330 24431 24431 -0.039207197783071024 HPTDPLTSF 9 Unmodified _HPTDPLTSF_ 0 0 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7482604980469 2 507.748182 1013.48181 0.63649 0.00032318 -0.45237 -0.00022969 0.18412 9.3489E-05 507.74788021130433 50.735 0.73376 50.735 50.433 51.167 0 122 39 4 0 0 0 0.012148 2 27899 27899;28007 74.423 38.379 1 153240000 20657 4259 14063 14331 24432;24433 24432 -0.024391093448116408 HPTDPLTSF 9 Unmodified _HPTDPLTSF_ 0 0 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7488098144531 2 507.748182 1013.48181 -0.26956 -0.00013687 1.0018 0.00050867 0.73227 0.00037181 507.748645773092 51.166 0.51013 50.752 50.518 51.028 -0.41351 80 25 4 0 0 0 0.016184 2 27528 27528;27628 67.344 37.119 1 28487000 20658 4259 14063 14331 24434;24435 24434 -0.024391093448116408 HPTDPLTSF 9 Unmodified _HPTDPLTSF_ 0 0 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7480773925781 2 507.748182 1013.48181 0.45375 0.00023039 0.1104 5.6054E-05 0.56415 0.00028645 507.74798646495304 56.737 0.70474 50.76 50.395 51.1 -5.9769 113 41 4 0 0 0 0.0095811 3 36201 36062;36201;36325 81.613 33.241 1 333300000 20659 4259 14063 14331 24436;24437;24438 24437 -0.024391093448116408 HPTDPLTSF 9 Unmodified _HPTDPLTSF_ 0 0 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.748182 1013.48181 0.73185 0.0003716 1.5671 0.00079567 2.2989 0.0011673 507.74809826228557 50.802 0.25357 50.748 50.628 50.882 -0.053871 -0.0010741 0.0014194 NaN 81.613 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1838500 20660 4259 14063 14331 -0.024391093448116408 HPTDVDYRV 9 Unmodified _HPTDVDYRV_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1 nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2706298828125 2 551.269813 1100.52507 -0.11379 -6.2729E-05 -1.6696 -0.0009204 -1.7834 -0.00098313 551.2687347666791 25.168 0.24781 25.168 25.036 25.283 0 18 12 2 0 0 0 0.1685 1 12873 12873 26.268 12.362 1 1373600 20661 1742 14064 14332 24439 24439 -0.021169195675156516 HPTDVDYRV 9 Unmodified _HPTDVDYRV_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1 nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.269287109375 2 551.269813 1100.52507 0.48177 0.00026559 -2.4191 -0.0013336 -1.9373 -0.001068 551.2682835043688 28.199 0.3531 25.051 24.807 25.16 -3.1482 39 18 3 0 0 0 0.05483 1 15623 15623 43.772 25.626 1 9404900 20662 1742 14064 14332 24440 24440 -0.021169195675156516 HPTDVDYRVM 10 Unmodified _HPTDVDYRVM_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1 nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.2921752929688 2 616.790055 1231.56556 0.86382 0.0005328 1.4079 0.00086838 2.2717 0.0014012 617.2928416402593 36.079 0.37329 31.886 31.709 32.082 -4.1928 57 22 4 0 0 0 0.10406 2 20993 20993;21139 45.74 30.491 1 13764000 20663 1742 14065 14333 24441;24442 24441 -0.04096321239421741 HPTEAHVLL 9 Unmodified _HPTEAHVLL_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7792053222656 2 508.779816 1015.54508 NaN NaN NaN NaN NaN NaN NaN 32.464 1 32.464 31.964 32.964 0 0 0 0 0.096036 1 16961 16961 44.407 14.182 1 20664 4019 14066 14334 24443 24443 0.03792876163083747 HPTEAHVLL 9 Unmodified _HPTEAHVLL_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7528991699219 2 508.779816 1015.54508 0.59934 0.00030493 -1.8894 -0.0009613 -1.2901 -0.00065637 508.7789625027303 35.49 0.23899 31.297 31.235 31.474 -4.1928 22 14 2 0 0 0 0.12183 1 20624 20624 34.102 18.255 1 5941400 20665 4019 14066 14334 24444 24444 0.03792876163083747 HPTERCFVF 9 Carbamidomethyl (C) _HPTERC(Carbamidomethyl (C))FVF_ HPTERC(1)FVF HPTERC(72)FVF 0 1 0 ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3 ENST00000470741.1_1_22:43015781-43027088:-|nuORF ENST00000470741.1_1_22:43015781-43027088:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7818603515625 2 596.782033 1191.54951 -0.088625 -5.289E-05 -1.261 -0.00075253 -1.3496 -0.00080542 596.7819352859021 45.198 0.52889 40.346 40.098 40.627 -4.852 117 35 4 0 0 0 0.013041 2 27617 27617;27755 71.922 42.841 1 111480000 20666 1778 14067 14335 24445;24446 24445 171 -0.03859982685639807 HPTEVLCLM 9 Carbamidomethyl (C),Oxidation (M) _HPTEVLC(Carbamidomethyl (C))LM(Oxidation (M))_ HPTEVLC(1)LM HPTEVLCLM(1) HPTEVLC(71)LM HPTEVLCLM(71) 0 1 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MSMS AL20221201_MKP_PDAC_01 4 558.2647094726562 2 558.264827 1114.5151 NaN NaN NaN NaN NaN NaN NaN 49.043 1 43.647 43.147 44.147 -5.3961 0 0 0 0.026323 1 30599 30599 70.716 19.86 1 20667 860 14068 14336 24447 24447 73 131 -0.0375756688877118 HPTEVLCLM 9 Carbamidomethyl (C),Oxidation (M) _HPTEVLC(Carbamidomethyl (C))LM(Oxidation (M))_ HPTEVLC(1)LM HPTEVLCLM(1) HPTEVLC(82)LM HPTEVLCLM(82) 0 1 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MSMS AL20221201_MKP_PDAC_01 4 558.2662963867188 2 558.264827 1114.5151 NaN NaN NaN NaN NaN NaN NaN 49.234 1 43.838 43.338 44.338 -5.3961 0 0 0 0.017457 1 30748 30748 81.864 36.164 1 20668 860 14068 14336 24448 24448 73 131 -0.0375756688877118 HPTFFNDVF 9 Unmodified _HPTFFNDVF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2655639648438 2 562.263999 1122.51345 1.3413 0.00075419 0.8979 0.00050486 2.2392 0.001259 562.2647311769532 91.75 0.35696 85.574 85.416 85.773 -6.1757 29 19 2 0 0 0 0.03568 1 60671 60671 52.268 18.166 1 14677000 20669 1790 14069 14337 24449 24449 -0.04291116590866295 HPTGKMFIL 9 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ HPTGKM(1)FIL HPTGKM(44)FIL 0 0 1 ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2867431640625 2 530.28642 1058.55829 -0.07448 -3.9496E-05 -0.049004 -2.5986E-05 -0.12348 -6.5482E-05 530.2865384343311 38.71 0.50906 38.423 38.303 38.812 -0.28687 75 23 4 0 0 0 0.05483 1 20468 20468 43.772 16.889 1 26671000 20670 2425 14070 14338 24450 24450 418 0.03134990950820793 HPTGKMFIL 9 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ HPTGKM(1)FIL HPTGKM(46)FIL 0 0 1 ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2861938476562 2 530.28642 1058.55829 0.11585 6.1431E-05 -0.52898 -0.00028051 -0.41313 -0.00021908 530.2862072438908 38.532 0.59295 38.549 38.17 38.763 0.01704 91 27 4 0 0 0 0.047788 1 20543 20543 45.7 15.475 1 54360000 20671 2425 14070 14338 24451 24451 418 0.03134990950820793 HPTGKMFIL 9 Oxidation (M) _HPTGKM(Oxidation (M))FIL_ 0 0 1 ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 530.28642 1058.55829 0.71092 0.00037699 0.4091 0.00021694 1.12 0.00059393 530.2864000155857 38.683 0.35361 38.683 38.458 38.811 0 0.13153 0.00073181 NaN 45.7 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 917750 20672 2425 14070 14338 418 0.03134990950820793 HPTGKMFIL 9 Unmodified _HPTGKMFIL_ 0 0 0 ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENST00000463632.1_1_7:7678661-7680452:-|nuORF ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2888793945312 2 522.288963 1042.56337 0.78089 0.00040785 -0.78964 -0.00041242 -0.0087466 -4.5682E-06 522.2885759464561 49.608 0.4728 49.559 49.25 49.723 -0.048824 56 23 3 0 0 0 0.032796 1 26821 26821 53.833 31.097 1 8434400 20673 2425 14070 14339 24452 24452 0.04379294813429624 HPTGLLCK 8 Unmodified _HPTGLLCK_ 0 0 0 nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000541602.5_1_11:113934022-114057819:+|nuORF nc|ENSG00000109906|Q05516-2|ZBTB16 nc|ENSG00000109906|Q05516-2|ZBTB16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.2392578125 2 434.739105 867.463658 0.57077 0.00024814 -2.4081 -0.0010469 -1.8373 -0.00079875 434.7396554842927 27.52 0.10052 24.484 24.395 24.496 -3.0365 6 4 2 0 0 0 8.7369 1 15236 15236 19.439 8.3245 1 4034900 20674 2680 14071 14340 24453 24453 0.024624771994922412 HPTIIGESVY 10 Unmodified _HPTIIGESVY_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2905883789062 2 558.290214 1114.56587 0.54216 0.00030268 -0.81738 -0.00045634 -0.27523 -0.00015366 558.2897266744848 45.755 0.25772 45.755 45.625 45.882 0 28 12 3 0 0 0 0.0093317 1 24937 24937 88.904 64.883 1 13860000 20675 2920 14072 14341 24454 24454 0.013174217521054743 HPTIIGESVY 10 Unmodified _HPTIIGESVY_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2905883789062 2 558.290214 1114.56587 0.44212 0.00024683 -1.1772 -0.00065723 -0.7351 -0.0004104 558.2896832426304 46.061 0.15308 45.724 45.628 45.781 -0.33664 12 7 2 0 0 0 0.0093317 1 24640 24640 88.904 58.267 1 4051800 20676 2920 14072 14341 24455 24455 0.013174217521054743 HPTIIGESVY 10 Unmodified _HPTIIGESVY_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.290771484375 2 558.290214 1114.56587 0.57815 0.00032278 1.0572 0.00059022 1.6353 0.000913 558.2907494252976 51.99 0.25638 46.255 46.166 46.422 -5.7345 25 17 2 0 0 0 0.024981 2 32774 32741;32774 71.134 48.397 1 46248000 20677 2920 14072 14341 24456;24457 24457 0.013174217521054743 HPTIISESF 9 Unmodified _HPTIISESF_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7637939453125 2 515.763832 1029.51311 -0.36418 -0.00018783 0.41973 0.00021648 0.055547 2.8649E-05 515.764139317934 48.521 0.49502 48.521 48.313 48.808 0 76 23 5 0 0 0 0.0090851 2 26582 26582;26697 85.357 49.313 1 183800000 20678 3127 14073 14342 24458;24459 24458 -0.00046536310719602625 HPTIISESF 9 Unmodified _HPTIISESF_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7638549804688 2 515.763832 1029.51311 0.21583 0.00011132 -0.41293 -0.00021298 -0.19711 -0.00010166 515.7635850526616 48.792 0.4343 48.42 48.238 48.673 -0.37172 77 23 4 0 0 0 0.0090851 1 26232 26232 85.357 43.262 1 96388000 20679 3127 14073 14342 24460 24460 -0.00046536310719602625 HPTIISESF 9 Unmodified _HPTIISESF_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7631225585938 2 515.763832 1029.51311 0.47576 0.00024538 -0.35213 -0.00018162 0.12363 6.3763E-05 515.7635907147226 48.488 0.29075 48.444 48.3 48.591 -0.04369 35 14 3 0 0 0 0.016184 1 26124 26124 67.344 31.3 1 4464400 20680 3127 14073 14342 24461 24461 -0.00046536310719602625 HPTIISESF 9 Unmodified _HPTIISESF_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.76416015625 2 515.763832 1029.51311 0.90019 0.00046429 0.011798 6.0852E-06 0.91199 0.00047037 515.7638720357102 54.487 0.76572 48.622 48.211 48.977 -5.8653 131 46 4 0 0 0 0.0090851 3 34434 34434;34577;34711 85.357 49.313 1 546430000 20681 3127 14073 14342 24462;24463;24464 24462 -0.00046536310719602625 HPTIKINGY 9 Unmodified _HPTIKINGY_ 0 0 0 nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000534305.1_1_11:65429156-65429584:-|nuORF;ENST00000525858.5_1_11:65429156-65430414:-|nuORF nc|ENSG00000173039|Q04206-2|RELA nc|ENSG00000173039|Q04206-2|RELA MSMS AL20221201_MKP_PDAC_01 4 521.788330078125 2 521.787641 1041.56073 NaN NaN NaN NaN NaN NaN NaN 35.969 1 31.777 31.277 32.277 -4.1928 0 0 0 0.050352 1 20950 20950 57.471 25.354 1 20682 8281 14074 14343 24465 24465 0.04161162680156849 HPTKGVKH 8 Unmodified _HPTKGVKH_ 0 0 0 REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2640075683594 2 452.261594 902.508634 0.57052 0.00025803 0.43666 0.00019749 1.0072 0.00045551 452.26179603947884 38.47 0.30899 34.101 33.948 34.257 -4.3689 38 19 3 0 0 0 0.61462 1 22681 22681 24.674 0 1 11266000 + 20683 24954 14075 14344 24466 24466 0.05348044057052448 HPTKGVKH 8 Unmodified _HPTKGVKH_ 0 0 0 REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 452.261594 902.508634 0.57052 0.00025803 0.43666 0.00019749 1.0072 0.00045551 452.26179603947884 38.47 0.30899 34.101 33.948 34.257 -4.3689 -0.056779 0.00019838 NaN 24.674 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11266000 + 20684 24954 14075 14344 0.05348044057052448 HPTKSPDPHL 10 Unmodified _HPTKSPDPHL_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7946166992188 2 564.793455 1127.57236 -0.087756 -4.9564E-05 0.97094 0.00054838 0.88318 0.00049881 564.7939867862759 33.793 0.29195 33.634 33.484 33.776 -0.15918 30 11 3 0 0 0 0.65282 1 17613 17613 8.1555 0.24537 1 2322500 + 20685 24588 14076 14345 24467 24467 0.013673597034767226 HPTLCLEQR 9 Unmodified _HPTLCLEQR_ 0 0 0 REV__ENST00000576485.1_1_17:7227315-7227656:-|nuORF REV__ENST00000576485.1_1_17:7227315-7227656:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.50244140625 3 366.190447 1095.54951 0.80293 0.00029403 1.7003 0.00062262 2.5032 0.00091665 366.19134498424853 16.399 0.076588 13.842 13.791 13.868 -2.557 10 9 2 0 0 0 0.209 1 8473 8473 2.2828 0.80087 1 1300300 + 20686 29024 14077 14346 24468 24468 0.005560173143521752 HPTLGPKITY 10 Unmodified _HPTLGPKITY_ 0 0 0 NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant;ENSG00000114388|ENST00000232501|NPRL2;ENST00000487632.5_1_3:50387870-50388140:-|nuORF NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8165893554688 2 563.816399 1125.61824 -0.059602 -3.3604E-05 0.76524 0.00043146 0.70564 0.00039785 563.8166763036928 37.157 0.31028 36.907 36.75 37.06 -0.25035 40 12 4 0 0 0 0.0040103 1 19533 19533 86.332 59.448 1 18183000 20687 3034 14078 14347 24469 24469 0.060460048857066795 HPTLGPKITY 10 Unmodified _HPTLGPKITY_ 0 0 0 NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant;ENSG00000114388|ENST00000232501|NPRL2;ENST00000487632.5_1_3:50387870-50388140:-|nuORF NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8167114257812 2 563.816399 1125.61824 0.11809 6.6579E-05 0.81911 0.00046183 0.9372 0.00052841 563.8167688205014 36.81 0.34356 36.831 36.661 37.005 0.021545 39 15 4 0 0 0 0.0068436 1 19480 19480 87.258 65.721 1 9758300 20688 3034 14078 14347 24470 24470 0.060460048857066795 HPTLGPKITY 10 Unmodified _HPTLGPKITY_ 0 0 0 NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant;ENSG00000114388|ENST00000232501|NPRL2;ENST00000487632.5_1_3:50387870-50388140:-|nuORF NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.8164672851562 2 563.816399 1125.61824 0.38689 0.00021814 -0.29687 -0.00016738 0.090017 5.0753E-05 563.815998909102 41.446 0.51186 36.838 36.583 37.095 -4.6079 91 33 3 0 0 0 0.0082036 2 24904 24771;24904 75.571 51.55 1 113050000 20689 3034 14078 14347 24471;24472 24472 0.060460048857066795 HPTLGPKITY 10 Unmodified _HPTLGPKITY_ 0 0 0 NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant;ENSG00000114388|ENST00000232501|NPRL2;ENST00000487632.5_1_3:50387870-50388140:-|nuORF NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2129516601562 3 376.213358 1125.61824 0.73143 0.00027517 -1.9026 -0.00071579 -1.1712 -0.00044062 376.21265567051574 41.391 0.42292 36.783 36.624 37.047 -4.6079 61 27 3 0 0 0 0.20771 1 24851 24851 32.898 17.159 1 19991000 20690 3034 14078 14347 24473 24473 0.060460048857066795 HPTLIQRTY 9 Unmodified _HPTLIQRTY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8118286132812 2 564.811648 1127.60874 -0.49911 -0.0002819 0.62927 0.00035542 0.13016 7.3518E-05 564.8116379588174 27.832 0.20403 27.832 27.741 27.945 0 19 9 3 0 0 0 0.069655 1 14344 14344 40.239 18.702 1 2930200 20691 4453 14079 14348 24474 24474 0.050042366001889604 HPTLIQRTY 9 Unmodified _HPTLIQRTY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8120727539062 2 564.811648 1127.60874 0.70318 0.00039716 -0.21773 -0.00012298 0.48545 0.00027419 564.8115232204289 27.81 0.30694 27.764 27.594 27.901 -0.046408 38 13 4 0 0 0 0.0089732 2 14292 14292;14396 86.332 60.933 1 54058000 20692 4453 14079 14348 24475;24476 24475 0.050042366001889604 HPTLIQRTY 9 Unmodified _HPTLIQRTY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.812255859375 2 564.811648 1127.60874 0.57007 0.00032198 -0.089466 -5.0532E-05 0.48061 0.00027145 564.811655047875 27.674 0.22151 27.703 27.576 27.798 0.028664 19 9 4 0 0 0 0.015688 1 14372 14372 67.838 45.102 1 11946000 20693 4453 14079 14348 24477 24477 0.050042366001889604 HPTLIQRTY 9 Unmodified _HPTLIQRTY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8123779296875 2 564.811648 1127.60874 0.9348 0.00052799 0.21049 0.00011889 1.1453 0.00064687 564.8117609935018 31.246 0.43209 27.55 27.344 27.776 -3.6958 54 22 3 0 0 0 0.01085 2 17601 17601;17712 78.06 47.424 1 176900000 20694 4453 14079 14348 24478;24479 24478 0.050042366001889604 HPTLIQRTY 9 Unmodified _HPTLIQRTY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MSMS AL20221201_MKP_PDAC_01 4 376.8780517578125 3 376.876857 1127.60874 NaN NaN NaN NaN NaN NaN NaN 31.191 1 27.495 26.995 27.995 -3.6958 0 0 0 0.0066921 1 17646 17646 80.676 61.05 1 20695 4453 14079 14348 24480 24480 0.050042366001889604 HPTLLQHAL 9 Unmodified _HPTLLQHAL_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2970581054688 2 515.295633 1028.57671 -0.054206 -2.7932E-05 0.8651 0.00044578 0.81089 0.00041785 515.2960524678252 38.414 0.30896 38.127 37.953 38.262 -0.28687 37 13 3 0 0 0 0.0086904 2 20182 20182;20279 107.19 57.254 1 10317000 20696 2105 14080 14349 24481;24482 24481 0.06356868917032443 HPTLLQHAL 9 Unmodified _HPTLLQHAL_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2960815429688 2 515.295633 1028.57671 NaN NaN NaN NaN NaN NaN NaN 37.985 1 38.002 37.502 38.502 0.01704 0 0 0 0.019743 1 20186 20186 78.728 48.092 1 20697 2105 14080 14349 24483 24483 0.06356868917032443 HPTLLQHAL 9 Unmodified _HPTLLQHAL_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2963256835938 2 515.295633 1028.57671 1.0425 0.00053722 -1.127 -0.00058071 -0.084412 -4.3497E-05 515.2951660842942 42.661 0.38877 37.977 37.764 38.153 -4.6846 57 25 3 0 0 0 0.085319 1 25719 25719 36.506 12.486 1 46403000 20698 2105 14080 14349 24484 24484 0.06356868917032443 HPTLPSAHQPP 11 Unmodified _HPTLPSAHQPP_ 0 0 0 nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248 nc|ENSG00000174807|Q9HCU0-2|CD248 nc|ENSG00000174807|Q9HCU0-2|CD248 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.306640625 2 591.306729 1180.59891 -0.31163 -0.00018427 0.27015 0.00015974 -0.041477 -2.4526E-05 591.3068431188213 23.506 0.49191 23.506 23.243 23.735 0 49 24 3 0 0 0 0.37677 1 12015 12015 22.736 8.8302 1 1433400 20699 8460 14081 14350 24485 24485 0.015830485948072237 HPTPHLHTL 9 Unmodified _HPTPHLHTL_ 0 0 0 nc|ENSG00000196998|Q9Y484-2|WDR45 nc|ENSG00000196998|Q9Y484-2|WDR45 nc|ENSG00000196998|Q9Y484-2|WDR45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5267028808594 3 351.526047 1051.55631 0.91092 0.00032021 0.16444 5.7804E-05 1.0754 0.00037802 351.52627188938544 23.826 0.32966 20.999 20.867 21.196 -2.8273 46 19 3 0 0 0 0.013323 1 12933 12933 55.503 29.235 1 9465800 20700 16481 14082 14351 24486 24486 0.03259698257238597 HPTPQVDEL 9 Unmodified _HPTPQVDEL_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.259033203125 2 518.258914 1034.50327 -0.35728 -0.00018516 1.1245 0.00058279 0.76724 0.00039763 518.2593341864748 34.467 0.38817 34.467 34.326 34.714 0 50 19 4 0 0 0 0.0090948 1 18156 18156 85.272 33.004 1 7539700 20701 5973 14083 14352 24487 24487 -0.01259724316082611 HPTPSPMAY 9 Oxidation (M) _HPTPSPM(Oxidation (M))AY_ HPTPSPM(1)AY HPTPSPM(71)AY 0 0 1 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7287292480469 2 508.728935 1015.44332 -0.050807 -2.5847E-05 0.45539 0.00023167 0.40458 0.00020582 508.7291526732463 22.615 0.43025 22.615 22.345 22.775 0 60 20 4 0 0 0 0.013472 1 11488 11488 70.716 32.742 1 4817300 20702 9785 14084 14353 24488 24488 1572 -0.06378738250975857 HPTPSPMAY 9 Oxidation (M) _HPTPSPM(Oxidation (M))AY_ HPTPSPM(1)AY HPTPSPM(71)AY 0 0 1 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7294006347656 2 508.728935 1015.44332 -0.20882 -0.00010623 0.85448 0.0004347 0.64566 0.00032847 508.7295172087293 25.404 0.47051 22.521 22.26 22.73 -2.8831 65 30 3 0 0 0 0.013472 1 13822 13822 70.716 41.634 1 8720100 20703 9785 14084 14353 24489 24489 1572 -0.06378738250975857 HPTPSPMAY 9 Unmodified _HPTPSPMAY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MSMS AL20221201_MKP_PDAC_01 4 500.732177734375 2 500.731477 999.448402 NaN NaN NaN NaN NaN NaN NaN 35.632 1 31.439 30.939 31.939 -4.1928 0 0 0 0.026323 1 20702 20702 70.716 42.229 1 20704 9785 14084 14354 24490 24490 -0.051344343883556576 HPTPSPPP 8 Unmodified _HPTPSPPP_ 0 0 0 ENST00000569746.1_1_16:31340324-31341298:+|nuORF ENST00000569746.1_1_16:31340324-31341298:+|nuORF ENST00000569746.1_1_16:31340324-31341298:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.2144165039062 2 415.213778 828.413003 NaN NaN NaN NaN NaN NaN NaN 23.732 1 20.905 20.405 21.405 -2.8273 0 0 0 0.97348 1 12861 12861 5.7604 0 1 20705 15463 14085 14355 24491 24491 -0.008067288538541106 HPTRSSRIL 9 Unmodified _HPTRSSRIL_ 0 0 0 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2096252441406 3 356.208718 1065.60433 1.3416 0.00047788 0.2816 0.00010031 1.6232 0.00057819 356.20867791700334 18.238 0.27221 15.617 15.504 15.776 -2.6215 37 22 2 0 0 0 0.43463 1 9605 9605 7.1017 0 1 6677000 + 20706 29539 14086 14356 24492 24492 0.074147721772988 HPTSGVIVL 9 Unmodified _HPTSGVIVL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7716674804688 2 461.77146 921.528367 0.93789 0.00043309 0.24831 0.00011466 1.1862 0.00054775 461.77135794788586 49.394 0.34912 49.394 49.256 49.606 0 43 15 4 0 0 0 0.03327 2 27144 27144;27258 53.576 9.1686 1 27940000 20707 1378 14087 14357 24493;24494 24493 0.064463752771303 HPTSGVIVL 9 Unmodified _HPTSGVIVL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.7713317871094 2 461.77146 921.528367 0.63727 0.00029427 0.30389 0.00014033 0.94117 0.0004346 461.77155077875705 49.601 0.40866 49.209 49.022 49.431 -0.3923 70 20 5 0 0 0 0.03327 1 26620 26620 53.576 13.618 1 45201000 20708 1378 14087 14357 24495 24495 0.064463752771303 HPTSGVIVL 9 Unmodified _HPTSGVIVL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.771728515625 2 461.77146 921.528367 0.62292 0.00028765 0.21392 9.8782E-05 0.83684 0.00038643 461.77160526426366 49.262 0.22186 49.218 49.093 49.315 -0.04369 17 10 2 0 0 0 0.087258 1 26642 26642 36.044 10.645 1 1101400 20709 1378 14087 14357 24496 24496 0.064463752771303 HPTSGVIVL 9 Unmodified _HPTSGVIVL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7726440429688 2 461.77146 921.528367 1.1237 0.00051887 -0.45225 -0.00020883 0.67141 0.00031004 461.77157008738305 54.362 0.60931 48.496 48.19 48.799 -5.8653 87 36 4 0 0 0 0.026094 3 34324 34324;34455;34591 57.471 9.1686 1 140820000 20710 1378 14087 14357 24497;24498;24499 24497 0.064463752771303 HPTSGVIVL 9 Unmodified _HPTSGVIVL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.5374755859375 1 922.535643 921.528367 1.0017 0.00092408 -0.18873 -0.00017411 0.81294 0.00074996 922.5353387291502 54.468 0.40884 48.603 48.32 48.729 -5.8653 38 25 2 0 0 0 0.000405 2 34401 34401;34540 146.01 92.432 1 13546000 20711 1378 14087 14357 24500;24501 24500 0.064463752771303 HPTSHVSLL 9 Unmodified _HPTSHVSLL_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7713317871094 2 495.771991 989.529429 0.24123 0.0001196 0.87891 0.00043574 1.1201 0.00055533 495.7721480747059 31.553 0.24152 31.45 31.333 31.575 -0.10269 23 9 3 0 0 0 0.026094 1 16391 16391 57.471 15.377 1 5090400 20712 8757 14088 14358 24502 24502 0.03424589646044751 HPTSHVSLL 9 Unmodified _HPTSHVSLL_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7733764648438 2 495.771991 989.529429 0.90365 0.000448 1.5496 0.00076826 2.4533 0.0012163 495.772670831015 34.647 0.48622 30.552 30.301 30.788 -4.0951 68 28 3 0 0 0 0.012148 2 20043 19909;20043 74.423 23.568 1 46956000 20713 8757 14088 14358 24503;24504 24504 0.03424589646044751 HPTSVISGY 9 Unmodified _HPTSVISGY_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7432556152344 2 480.742899 959.471246 -0.48547 -0.00023339 0.20914 0.00010054 -0.27633 -0.00013285 480.7429167716668 33.085 0.41934 33.085 32.908 33.327 0 59 20 4 0 0 0 0.0083087 2 17266 17266;17367 97.075 36.685 1 55904000 20714 3515;12990 14089 14359 24505;24506 24505 -0.010110919992371237 HPTSVISGY 9 Unmodified _HPTSVISGY_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.74365234375 2 480.742899 959.471246 -0.13625 -6.55E-05 1.0806 0.0005195 0.94438 0.000454 480.7433480710623 33.132 0.31004 32.972 32.833 33.144 -0.15919 34 12 3 0 0 0 0.0083087 2 17251 17251;17351 97.075 46.22 1 17150000 20715 3515;12990 14089 14359 24507;24508 24507 -0.010110919992371237 HPTSVISGY 9 Unmodified _HPTSVISGY_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7425231933594 2 480.742899 959.471246 NaN NaN NaN NaN NaN NaN NaN 32.964 1 32.994 32.494 33.494 0.029743 0 0 0 0.071041 1 17326 17326 50.855 14.811 1 20716 3515;12990 14089 14359 24509 24509 -0.010110919992371237 HPTSVISGY 9 Unmodified _HPTSVISGY_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7435913085938 2 480.742899 959.471246 1.3312 0.00063997 -0.3996 -0.0001921 0.93161 0.00044787 480.7426742978659 37.486 0.52729 33.203 32.923 33.45 -4.2835 105 31 4 0 0 0 0.0083087 3 21851 21851;21972;22097 97.075 46.22 1 254580000 20717 3515;12990 14089 14359 24510;24511;24512 24510 -0.010110919992371237 HPTSVISGY 9 Unmodified _HPTSVISGY_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1;ENST00000412860.1_1_7:42834686-42835559:+|nuORF ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 960.4784545898438 1 960.478522 959.471246 1.0935 0.0010502 -1.1392 -0.0010942 -0.045746 -4.3938E-05 960.4773887981835 37.488 0.33189 33.205 32.991 33.322 -4.2835 35 19 2 0 0 0 6.615E-07 2 22051 21925;22051 164.52 104.13 1 12063000 20718 3515;12990 14089 14359 24513;24514 24514 -0.010110919992371237 HPTTISPRY 9 Unmodified _HPTTISPRY_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2833251953125 2 536.282723 1070.55089 -0.14473 -7.7618E-05 1.1448 0.00061392 1 0.0005363 536.2832499757861 22.535 0.32884 22.535 22.304 22.633 0 31 15 3 0 0 0 0.091924 1 11426 11426 34.932 13.185 1 1756900 20719 1773 14090 14360 24515 24515 0.01843974674761739 HPTTISPRY 9 Unmodified _HPTTISPRY_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2833862304688 2 536.282723 1070.55089 -0.20315 -0.00010894 -0.20515 -0.00011002 -0.40829 -0.00021896 536.2825666251481 22.463 0.28803 22.485 22.335 22.623 0.022896 34 12 4 0 0 0 0.085319 2 11386 11386;11488 36.506 8.0194 1 3117100 20720 1773 14090 14360 24516;24517 24516 0.01843974674761739 HPTTISPRY 9 Unmodified _HPTTISPRY_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2827758789062 2 536.282723 1070.55089 -0.051285 -2.7503E-05 -0.3291 -0.00017649 -0.38039 -0.000204 536.2826466013505 25.104 0.45619 22.221 22.008 22.464 -2.8831 98 41 3 0 0 0 0.012668 2 13649 13649;13764 72.968 29.11 1 35888000 20721 1773 14090 14360 24518;24519 24518 0.01843974674761739 HPTTISPRY 9 Unmodified _HPTTISPRY_ 0 0 0 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8565368652344 3 357.857574 1070.55089 0.70521 0.00025236 -1.1381 -0.00040727 -0.43286 -0.0001549 357.8572906020509 25.12 0.30001 22.237 22.144 22.444 -2.8831 44 30 2 0 0 0 0.03568 1 13712 13712 40.239 24.501 1 11745000 20722 1773 14090 14360 24520 24520 0.01843974674761739 HPTVVISAY 9 Unmodified _HPTVVISAY_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.769287109375 2 493.768917 985.523281 0.61115 0.00030177 -0.047676 -2.3541E-05 0.56347 0.00027823 493.7688549243922 42.477 0.59274 42.477 42.26 42.853 0 83 29 4 0 0 0 0.0083087 2 22914 22914;23023 97.075 34.502 1 170850000 20723 6997 14091 14361 24521;24522 24521 0.029940714145254788 HPTVVISAY 9 Unmodified _HPTVVISAY_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7688903808594 2 493.768917 985.523281 0.29731 0.0001468 -0.065145 -3.2166E-05 0.23216 0.00011463 493.7688444906476 42.725 0.42089 42.415 42.235 42.656 -0.31006 54 18 4 0 0 0 0.0083087 2 22658 22658;22763 97.075 29.731 1 221880000 20724 6997 14091 14361 24523;24524 24523 0.029940714145254788 HPTVVISAY 9 Unmodified _HPTVVISAY_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7676391601562 2 493.768917 985.523281 0.51394 0.00025377 -0.39886 -0.00019695 0.11507 5.682E-05 493.7686361232601 42.427 0.29206 42.418 42.247 42.539 -0.0088196 25 12 3 0 0 0 0.0083087 1 22692 22692 97.075 29.731 1 13711000 20725 6997 14091 14361 24525 24525 0.029940714145254788 HPTVVISAY 9 Unmodified _HPTVVISAY_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7696838378906 2 493.768917 985.523281 1.4719 0.00072679 -0.27268 -0.00013464 1.1992 0.00059215 493.76866574784367 47.47 0.79477 42.236 41.946 42.74 -5.2339 166 48 5 0 0 0 0.0090851 4 29715 29323;29454;29580;29715 85.357 21.12 1 970840000 20726 6997 14091 14361 24526;24527;24528;24529 24529 0.029940714145254788 HPTVVISAY 9 Unmodified _HPTVVISAY_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.5328369140625 1 986.530558 985.523281 1.445 0.0014255 -0.079671 -7.8598E-05 1.3653 0.0013469 986.5302900179373 47.491 0.52472 42.257 42.025 42.55 -5.2339 73 30 3 0 0 0 0.0018186 3 29615 29367;29490;29615 133.7 48.345 1 47358000 20727 6997 14091 14361 24530;24531;24532 24532 0.029940714145254788 HPTWPLPSLP 10 Unmodified _HPTWPLPSLP_ 0 0 0 REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF REV__ENST00000302787.2_1_4:1814336-1814618:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8088989257812 2 572.811116 1143.60768 NaN NaN NaN NaN NaN NaN NaN 21.456 1 21.484 20.984 21.984 0.028357 0 0 0 0.85122 1 10888 10888 10.074 2.1638 1 + 20728 25342 14092 14362 24533 24533 0.04162022231298579 HPVAKILHAY 10 Unmodified _HPVAKILHAY_ 0 0 0 nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000462540.1_1_4:154475378-154479541:+|nuORF nc|ENSG00000121210|A2VDJ0-3|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2177429199219 3 383.557348 1147.65021 0.11917 4.5709E-05 1.0186 0.00039069 1.1378 0.0004364 383.5578443925583 28.405 0.23363 28.434 28.286 28.52 0.029564 16 9 2 0 0 0 0.11322 1 14781 14781 51.63 38.757 1 5254500 20729 3571 14093 14363 24534 24534 0.08229417359507352 HPVAKILHAY 10 Unmodified _HPVAKILHAY_ 0 0 0 nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;ENST00000462540.1_1_4:154475378-154479541:+|nuORF nc|ENSG00000121210|A2VDJ0-3|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L MSMS AL20221201_MKP_PDAC_01 4 383.5571594238281 3 383.557348 1147.65021 NaN NaN NaN NaN NaN NaN NaN 32.528 1 28.672 28.172 29.172 -3.8562 0 0 0 0.45412 1 18557 18557 36.506 28.351 1 20730 3571 14093 14363 24535 24535 0.08229417359507352 HPVASPRDKFG 11 Unmodified _HPVASPRDKFG_ 0 0 0 ENST00000522295.5_1_16:67201049-67201403:+|nuORF ENST00000522295.5_1_16:67201049-67201403:+|nuORF ENST00000522295.5_1_16:67201049-67201403:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8206176757812 2 605.820004 1209.62546 -0.27961 -0.00016939 1.1126 0.00067403 0.83298 0.00050464 605.820614709609 33.561 0.30583 33.402 33.247 33.553 -0.15918 36 12 4 0 0 0 0.69316 1 17579 17579 4.897 0.95262 1 5805200 20731 14753 14094 14364 24536 24536 0.029027374861243516 HPVASSNPAF 10 Unmodified _HPVASSNPAF_ 0 0 0 nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24 nc|nan|Q7Z6I8-2|C5orf24 nc|nan|Q7Z6I8-2|C5orf24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.75244140625 2 513.753798 1025.49304 NaN NaN NaN NaN NaN NaN NaN 28.368 1 28.368 27.868 28.868 0 0 0 0 0.66657 1 14650 14650 18.146 3.3081 1 20732 9005 14095 14365 24537 24537 -0.01868287250681533 HPVDFLDAF 9 Unmodified _HPVDFLDAF_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7601318359375 2 530.758549 1059.50255 0.35529 0.00018857 0.99712 0.00052923 1.3524 0.0007178 530.7589613170393 78.383 0.42466 78.383 78.15 78.575 0 47 19 4 0 0 0 0.013472 2 43499 43499;43593 70.716 42.229 1 2135200 20733 10423 14096 14366 24538;24539 24538 -0.024825189651664914 HPVDFLDAF 9 Unmodified _HPVDFLDAF_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7589111328125 2 530.758549 1059.50255 0.054101 2.8715E-05 0.68159 0.00036176 0.73569 0.00039047 530.7588480399551 78.795 0.42148 78.309 78.084 78.506 -0.48596 45 16 3 0 0 0 0.0094915 2 43102 43102;43201 81.864 53.377 1 6634700 20734 10423 14096 14366 24540;24541 24540 -0.024825189651664914 HPVDFLDAF 9 Unmodified _HPVDFLDAF_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7597045898438 2 530.758549 1059.50255 1.1961 0.00063485 0.016756 8.8935E-06 1.2129 0.00064374 530.7586262567256 96.885 0.40387 90.709 90.491 90.895 -6.1757 56 23 3 0 0 0 0.0094915 2 64159 64159;64281 81.864 53.377 1 46245000 20735 10423 14096 14366 24542;24543 24542 -0.024825189651664914 HPVDHPIPTY 10 Unmodified _HPVDHPIPTY_ 0 0 0 REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF REV__ENST00000164227.9_1_19:45252055-45254595:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5318908691406 3 392.532979 1174.57711 NaN NaN NaN NaN NaN NaN NaN 17.629 1 17.643 17.143 18.143 0.013865 0 0 0 0.96627 1 8780 8780 4.1895 0 1 + 20736 24715 14097 14367 24544 24544 -0.0031975615377177746 HPVDNAGLF 9 Unmodified _HPVDNAGLF_ 0 0 0 nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000114770|O15440-4|ABCC5;nc|ENSG00000114770|O15440-3|ABCC5;nc|ENSG00000114770|O15440-2|ABCC5 nc|ENSG00000114770|O15440-5|ABCC5 nc|ENSG00000114770|O15440-5|ABCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2431030273438 2 485.243067 968.47158 0.95883 0.00046527 0.7351 0.0003567 1.6939 0.00082197 485.24402137299677 42.824 0.52136 42.824 42.445 42.966 0 41 26 2 0 0 0 0.008678 1 23168 23168 88.904 30.225 1 8125400 20737 3060 14098 14368 24545 24545 -0.013916722793965164 HPVDNVIAV 9 Unmodified _HPVDNVIAV_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2663879394531 2 482.266542 962.51853 -0.041526 -2.0026E-05 0.16222 7.8231E-05 0.12069 5.8205E-05 482.26605902354726 41.861 0.28035 41.861 41.731 42.011 0 29 14 3 0 0 0 0.032796 1 22601 22601 53.833 13.875 1 4259200 20738 8520 14099 14369 24546 24546 0.03577187271753246 HPVDVLRTRF 10 Unmodified _HPVDVLRTRF_ 0 0 0 ENSG00000125454|ENST00000416858|SLC25A19 ENSG00000125454|ENST00000416858|SLC25A19 ENSG00000125454|ENST00000416858|SLC25A19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.9033813476562 3 413.903406 1238.68839 0.081369 3.3679E-05 -1.0375 -0.00042943 -0.95615 -0.00039575 413.9035613389768 39.109 0.21621 39.121 39.001 39.217 0.011456 15 9 2 0 0 0 0.67755 1 20826 20826 5.4027 1.8157 1 955120 20739 3853 14100 14370 24547 24547 0.07859303274153717 HPVEAAQTL 9 Unmodified _HPVEAAQTL_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2567138671875 2 483.256174 964.497795 -0.25675 -0.00012408 0.70622 0.00034129 0.44947 0.00021721 483.2567726092013 25.504 0.1472 25.504 25.466 25.613 0 11 6 2 0 0 0 0.23158 1 13104 13104 20.454 5.6154 1 546080 20740 7972 14101 14371 24548 24548 0.01412596892100737 HPVEKKLTY 9 Unmodified _HPVEKKLTY_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2135925292969 3 372.213358 1113.61824 -0.58544 -0.00021791 0.75167 0.00027978 0.16623 6.1874E-05 372.21357055503904 17.141 0.20098 17.141 17.055 17.256 0 140 44 4 0 0 0 0.20428 1 8412 8412 27.223 21.926 1 7631600 20741 1915 14102 14372 24549 24549 0.06598004885699993 HPVEKKLTY 9 Unmodified _HPVEKKLTY_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2138061523438 3 372.213358 1113.61824 1.1889 0.00044252 -0.17005 -6.3295E-05 1.0188 0.00037923 372.21316456928844 18.132 0.45336 15.51 15.314 15.768 -2.6215 101 33 4 0 0 0 0.024189 2 9477 9477;9581 55.249 43.074 1 62784000 20742 1915 14102 14372 24550;24551 24550 0.06598004885699993 HPVEKKLTY 9 Unmodified _HPVEKKLTY_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.0819091796875 2 557.816399 1113.61824 0.75767 0.00042264 0.077123 4.3021E-05 0.83479 0.00046566 557.8162114362981 18.129 0.24696 15.507 15.357 15.604 -2.6215 39 20 3 0 0 0 0.033265 1 9495 9495 65.474 41.453 1 3148700 20743 1915 14102 14372 24552 24552 0.06598004885699993 HPVEKKLTY 9 Unmodified _HPVEKKLTY_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 372.213358 1113.61824 -0.56342 -0.00020971 -0.0075897 -2.825E-06 -0.57101 -0.00021254 372.2133167106193 17.439 0.10254 17.453 17.417 17.519 0.013865 0.1588 -0.00061295 NaN 27.223 47 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1732500 20744 1915 14102 14372 0.06598004885699993 HPVEKKLTY 9 Unmodified _HPVEKKLTY_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.213358 1113.61824 0.021196 7.8895E-06 0.17788 6.621E-05 0.19908 7.41E-05 372.21338044653135 17.284 0.12281 17.289 17.225 17.348 0.0050564 -0.0054461 -0.00040584 NaN 27.223 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1629600 20745 1915 14102 14372 0.06598004885699993 HPVEKPVVL 9 Unmodified _HPVEKPVVL_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.3082580566406 2 509.30821 1016.60187 -0.33263 -0.00016941 0.23609 0.00012024 -0.096537 -4.9167E-05 509.308239977222 30.636 0.36839 30.636 30.463 30.831 0 54 17 4 0 0 0 0.0089732 2 15873 15873;15973 86.332 46.375 1 26180000 20746 3831 14103 14373 24553;24554 24553 0.09422923719614573 HPVEKPVVL 9 Unmodified _HPVEKPVVL_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3088989257812 2 509.30821 1016.60187 0.25352 0.00012912 0.99236 0.00050541 1.2459 0.00063453 509.30884231928894 30.599 0.28143 30.496 30.337 30.618 -0.10269 25 10 3 0 0 0 0.036857 1 15860 15860 51.63 22.548 1 3266200 20747 3831 14103 14373 24555 24555 0.09422923719614573 HPVEKPVVL 9 Unmodified _HPVEKPVVL_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.307861328125 2 509.30821 1016.60187 1.214 0.00061828 -0.55216 -0.00028122 0.6618 0.00033706 509.30821505627375 33.799 0.59366 29.813 29.539 30.133 -3.9853 108 32 4 0 0 0 0.0089732 2 19271 19271;19392 86.332 40.182 1 114680000 20748 3831 14103 14373 24556;24557 24556 0.09422923719614573 HPVEPGPAV 9 Unmodified _HPVEPGPAV_ 0 0 0 ENST00000451813.6_2_20:33591003-33591225:-|nuORF ENST00000451813.6_2_20:33591003-33591225:-|nuORF ENST00000451813.6_2_20:33591003-33591225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7405090332031 2 451.74016 901.465767 -0.12664 -5.721E-05 0.5548 0.00025063 0.42816 0.00019342 451.7404290641179 25.624 0.14566 25.624 25.528 25.674 0 11 6 2 0 0 0 0.2001 1 13139 13139 23.148 5.0134 1 676540 20749 13531 14104 14374 24558 24558 0.01109229208952911 HPVEQSLTRY 10 Unmodified _HPVEQSLTRY_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;nc|ENSG00000109452|O15327-2|INPP4B ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.3190307617188 2 615.317294 1228.62004 -0.1205 -7.4148E-05 0.18689 0.000115 0.066385 4.0848E-05 615.3175037724927 25.299 0.2014 25.299 25.184 25.386 0 21 9 3 0 0 0 0.43662 1 12956 12956 19.626 10.881 1 1494600 20750 2649 14105 14375 24559 24559 0.014870139036474939 HPVEQSLTRY 10 Unmodified _HPVEQSLTRY_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;nc|ENSG00000109452|O15327-2|INPP4B ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.3182983398438 2 615.317294 1228.62004 0.56447 0.00034733 0.038514 2.3698E-05 0.60299 0.00037103 615.3173953169368 28.476 0.30338 25.328 25.193 25.497 -3.1482 24 15 2 0 0 0 0.11654 1 15926 15926 43.982 34.599 1 5029000 20751 2649 14105 14375 24560 24560 0.014870139036474939 HPVFQQESF 9 Unmodified _HPVFQQESF_ 0 0 0 ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7673950195312 2 559.766906 1117.51926 -0.19661 -0.00011006 0.48439 0.00027115 0.28778 0.00016109 559.7670869484429 41.351 0.32649 41.351 41.154 41.48 0 36 15 3 0 0 0 0.047196 2 22237 22237;22364 46.021 20.622 1 44838000 20752 7984 14106 14376 24561;24562 24561 -0.03480018079198999 HPVFQQESF 9 Unmodified _HPVFQQESF_ 0 0 0 ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2677001953125 2 559.766906 1117.51926 -0.13487 -7.5493E-05 -0.20112 -0.00011258 -0.33598 -0.00018807 559.7669960192268 41.66 0.40595 41.353 41.148 41.554 -0.30682 47 18 4 0 0 0 0.047196 1 22068 22068 46.021 16.939 1 30783000 20753 7984 14106 14376 24563 24563 -0.03480018079198999 HPVFQQESF 9 Unmodified _HPVFQQESF_ 0 0 0 ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT ENSG00000170430|ENST00000651593|MGMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7667846679688 2 559.766906 1117.51926 0.59661 0.00033396 -0.49094 -0.00027481 0.10567 5.9149E-05 559.7669894615261 46.511 0.48104 41.43 41.143 41.624 -5.0805 149 66 3 0 0 0 0.019303 2 28789 28640;28789 64.236 33.6 1 160250000 20754 7984 14106 14376 24564;24565 24565 -0.03480018079198999 HPVFYQGTY 9 Unmodified _HPVFYQGTY_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2;ENST00000504983.1_1_5:175919267-175921086:+|nuORF ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2636108398438 2 556.263999 1110.51345 -0.095162 -5.2935E-05 -0.61198 -0.00034042 -0.70714 -0.00039336 556.2636904335376 41.641 0.24412 41.334 41.188 41.433 -0.30682 17 10 2 0 0 0 0.038285 1 22100 22100 50.855 18.069 1 7123200 20755 2945 14107 14377 24566 24566 -0.037391165908502444 HPVFYQGTY 9 Unmodified _HPVFYQGTY_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2;ENST00000504983.1_1_5:175919267-175921086:+|nuORF ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7662963867188 2 556.263999 1110.51345 0.61884 0.00034424 0.52726 0.0002933 1.1461 0.00063753 556.766536203928 46.264 0.63013 41.31 40.878 41.508 -4.9549 86 42 3 0 0 0 0.023164 1 28545 28545 60.39 22.416 1 47702000 20756 2945 14107 14377 24567 24567 -0.037391165908502444 HPVGAGCQVF 10 Carbamidomethyl (C) _HPVGAGC(Carbamidomethyl (C))QVF_ HPVGAGC(1)QVF HPVGAGC(44)QVF 0 1 0 DDTL-GSTT1|1|fusion;DDT-GSTT1|1|fusion DDTL-GSTT1|1|fusion DDTL-GSTT1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2566528320312 2 536.255651 1070.49675 0.24194 0.00012974 1.4271 0.00076528 1.669 0.00089503 536.2566779099164 38.665 0.40334 34.297 34.058 34.461 -4.3689 45 25 2 0 0 0 0.1131 1 22813 22813 44.407 21.259 1 25307000 20757 229 14108 14378 24568 24568 5 -0.03567940748462206 HPVGAIPP 8 Unmodified _HPVGAIPP_ 0 0 0 ENST00000334512.9_1_10:81072492-81072669:+|nuORF ENST00000334512.9_1_10:81072492-81072669:+|nuORF ENST00000334512.9_1_10:81072492-81072669:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2273864746094 2 394.226688 786.438824 0.5134 0.0002024 0.2018 7.9554E-05 0.7152 0.00028195 394.2266554300581 42.49 0.16467 42.49 42.401 42.565 0 10 7 2 0 0 0 0.80044 1 23021 23021 6.3541 0 1 2043300 20758 11885 14109 14379 24569 24569 0.03706165388427962 HPVGEASIL 9 Unmodified _HPVGEASIL_ 0 0 0 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7537231445312 2 461.753267 921.491981 0.7985 0.00036871 -1.0644 -0.00049149 -0.26589 -0.00012278 461.75275292073576 39.125 0.25342 39.125 38.97 39.224 0 25 11 3 0 0 0 0.03327 1 20937 20937 53.576 0 1 4107600 20759 1417 14110 14380 24570 24570 0.028094983804294316 HPVGEASIL 9 Unmodified _HPVGEASIL_ 0 0 0 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7522277832031 2 461.753267 921.491981 0.54155 0.00025006 -0.99202 -0.00045807 -0.45048 -0.00020801 461.75291153673766 44.053 0.40915 39.288 39.034 39.443 -4.7648 45 26 2 0 0 0 0.03327 1 26894 26894 53.576 9.1686 1 15983000 20760 1417 14110 14380 24571 24571 0.028094983804294316 HPVGGGRL 8 Unmodified _HPVGGGRL_ 0 0 0 nc|ENSG00000189319|Q14153-2|FAM53B;ENST00000494792.1_1_10:126307332-126395327:-|nuORF;ENSG00000189319|ENST00000337318|FAM53B nc|ENSG00000189319|Q14153-2|FAM53B nc|ENSG00000189319|Q14153-2|FAM53B MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.7279968261719 2 396.727387 791.44022 1.0595 0.00042035 -0.058695 -2.3286E-05 1.0008 0.00039706 396.72739285638795 19.104 0.28296 16.477 16.328 16.611 -2.627 38 18 3 0 0 0 0.70131 1 10163 10163 17.087 5.9721 1 7678600 20761 9740 14111 14381 24572 24572 0.03615799477177006 HPVHPDIKL 9 Unmodified _HPVHPDIKL_ 0 0 0 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5380554199219 3 352.538064 1054.59236 -0.70839 -0.00024974 0.029572 1.0425E-05 -0.67882 -0.00023931 352.53819127836 30.141 0.2681 30.141 30.036 30.305 0 22 12 2 0 0 0 0.040683 1 15643 15643 49.554 25.765 1 5165400 20762 603 14112 14382 24573 24573 0.06725155434082808 HPVHPDIKL 9 Unmodified _HPVHPDIKL_ 0 0 0 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.53857421875 3 352.538064 1054.59236 0.63317 0.00022322 -0.25445 -8.9704E-05 0.37872 0.00013351 352.53813768424266 30.108 0.31011 30.028 29.895 30.205 -0.080431 25 11 3 0 0 0 0.047714 1 15600 15600 45.74 25.325 1 5916900 20763 603 14112 14382 24574 24574 0.06725155434082808 HPVHPDIKL 9 Unmodified _HPVHPDIKL_ 0 0 0 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1;nc|ENSG00000033800|O75925-3|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5386657714844 3 352.538064 1054.59236 1.2752 0.00044957 0.20739 7.3112E-05 1.4826 0.00052268 352.53808405779995 33.059 0.45156 29.203 29.01 29.461 -3.8562 39 28 2 0 0 0 0.091924 2 18996 18871;18996 34.932 21.317 1 37892000 20764 603 14112 14382 24575;24576 24576 0.06725155434082808 HPVHPFFY 8 Unmodified _HPVHPFFY_ 0 0 0 REV__ENSG00000176165|ENST00000313071|FOXG1 REV__ENSG00000176165|ENST00000313071|FOXG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7608032226562 2 522.25852 1042.50249 1.0882 0.00056833 -2.2118 -0.0011551 -1.1236 -0.00058681 522.7609592016302 54.938 0.29839 49.073 48.914 49.213 -5.8653 28 18 2 0 0 0 0.70131 1 34839 34839 17.087 0.14425 1 10579000 + 20765 22914 14113 14383 24577 24577 -0.01706474174466166 HPVHPFLAVAY 11 Unmodified _HPVHPFLAVAY_ 0 0 0 ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000566052.1_1_16:1652334-1657279:-|nuORF ENSG00000187535|ENST00000426508|IFT140 ENSG00000187535|ENST00000426508|IFT140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.83935546875 2 625.837665 1249.66078 0.73785 0.00046178 0.19626 0.00012283 0.93411 0.0005846 625.8377747132348 52.787 0.31963 52.723 52.563 52.882 -0.063423 45 15 4 0 0 0 0.03764 2 28573 28573;28675 53.576 22.939 1 11974000 20766 9562 14114 14384 24578;24579 24578 0.04593400013959581 HPVHPFLAVAY 11 Unmodified _HPVHPFLAVAY_ 0 0 0 ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF;ENST00000566052.1_1_16:1652334-1657279:-|nuORF ENSG00000187535|ENST00000426508|IFT140 ENSG00000187535|ENST00000426508|IFT140 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.336181640625 2 625.837665 1249.66078 0.24464 0.0001531 -2.8296 -0.0017709 -2.585 -0.0016178 626.3361911236861 82.419 0.60863 76.243 75.83 76.438 -6.1757 44 33 2 0 0 0 0.15555 2 54073 54073;54210 36.044 18.931 1 19855000 20767 9562 14114 14384 24580;24581 24580 0.04593400013959581 HPVHQYYL 8 Unmodified _HPVHQYYL_ 0 0 0 nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8479919433594 3 352.846898 1055.51886 1.2878 0.0004544 -0.81183 -0.00028645 0.47596 0.00016794 352.8464204737273 33.064 0.43898 29.207 28.989 29.428 -3.8562 66 27 3 0 0 0 0.65867 2 18851 18851;18976 21.747 6.9084 1 53776000 20768 2177 14115 14385 24582;24583 24582 -0.006673930083934465 HPVISESEVF 10 Unmodified _HPVISESEVF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2888793945312 2 572.287671 1142.56079 0.69625 0.00039846 -0.086172 -4.9315E-05 0.61008 0.00034914 572.2876270829953 49.369 0.23032 49.369 49.256 49.487 0 23 10 3 0 0 0 0.011274 1 27157 27157 85.357 45.399 1 5863500 20769 4205 14116 14386 24584 24584 -0.004788821105421448 HPVISESEVF 10 Unmodified _HPVISESEVF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20221201_MKP_PDAC_01 4 572.2871704101562 2 572.287671 1142.56079 NaN NaN NaN NaN NaN NaN NaN 55.692 1 49.771 49.271 50.271 -5.9211 0 0 0 0.02494 1 35478 35478 85.357 45.399 1 20770 4205 14116 14386 24585 24585 -0.004788821105421448 HPVISESEVF 10 Unmodified _HPVISESEVF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 572.287671 1142.56079 1.2107 0.00069285 -2.2573 -0.0012918 -1.0467 -0.000599 572.2856964259295 55.571 0.066555 49.65 49.621 49.688 -5.9211 0.14059 -0.0022891 NaN 85.357 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9664800 20771 4205 14116 14386 -0.004788821105421448 HPVKGMPV 8 Unmodified _HPVKGMPV_ 0 0 0 REV__ENSG00000044446|ENST00000379942|PHKA2 REV__ENSG00000044446|ENST00000379942|PHKA2 MSMS AL20221201_MKP_PDAC_01 4 432.7413635253906 2 432.741648 863.468743 NaN NaN NaN NaN NaN NaN NaN 25.863 1 22.912 22.412 23.412 -2.9511 0 0 0 0.95607 1 14193 14193 9.3474 0.75416 1 + 20772 17215 14117 14387 24586 24586 0.031547810621191275 HPVKIGDLF 9 Unmodified _HPVKIGDLF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2929077148438 2 513.292559 1024.57057 0.38041 0.00019526 0.37761 0.00019382 0.75802 0.00038908 513.2927118896682 53.623 0.35815 53.171 52.984 53.342 -0.45173 46 17 3 0 0 0 0.036857 1 29056 29056 51.63 13.656 1 26573000 20773 4682 14118 14388 24587 24587 0.059263506854904335 HPVKIGDLF 9 Unmodified _HPVKIGDLF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.292724609375 2 513.292559 1024.57057 0.27963 0.00014353 0.65358 0.00033548 0.93321 0.00047901 513.2929002343536 53.251 0.31753 53.187 53.044 53.361 -0.063423 39 15 3 0 0 0 0.032796 1 28837 28837 53.833 19.73 1 12006000 20774 4682 14118 14388 24588 24588 0.059263506854904335 HPVKIGDLF 9 Unmodified _HPVKIGDLF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2921752929688 2 513.292559 1024.57057 0.87063 0.00044689 1.869 0.00095933 2.7396 0.0014062 513.2923778624712 81.253 1.8722 75.078 74.566 76.438 -6.1757 182 105 3 0 0 0 0.017075 2 53205 53205;53369 66.457 32.354 1 64198000 20775 4682 14118 14388 24589;24590 24589 0.059263506854904335 HPVKIGDLF 9 Unmodified _HPVKIGDLF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;ENST00000476117.1_1_7:104800923-104844162:-|nuORF ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.292559 1024.57057 0.48115 0.00024697 0.084807 4.3531E-05 0.56595 0.0002905 513.2927584230977 53.148 0.16413 53.148 53.08 53.244 0 -0.020881 -0.00035747 NaN 53.833 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 718430 20776 4682 14118 14388 0.059263506854904335 HPVKKQAAL 9 Unmodified _HPVKKQAAL_ 0 0 0 REV__nc|ENSG00000116337|Q01433-4|AMPD2 REV__nc|ENSG00000116337|Q01433-4|AMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8070068359375 2 496.306001 990.597449 0.3375 0.0001675 -0.0095841 -4.7567E-06 0.32792 0.00016275 496.3062664389384 38.799 0.22272 38.81 38.678 38.9 0.011452 19 10 2 0 0 0 0.2001 1 20628 20628 23.148 0.41214 1 3683600 + 20777 29588 14119 14389 24591 24591 0.10177459296698999 HPVLAQCDVF 10 Carbamidomethyl (C) _HPVLAQC(Carbamidomethyl (C))DVF_ HPVLAQC(1)DVF HPVLAQC(71)DVF 0 1 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7931518554688 2 593.289691 1184.56483 0.35541 0.00021086 -1.2398 -0.00073559 -0.88443 -0.00052472 593.2888088947238 55.849 0.38614 49.928 49.706 50.092 -5.9211 45 22 3 0 0 0 0.024981 1 35501 35501 71.134 42.647 1 32827000 20778 8795 14120 14390 24592 24592 836 -0.020071158884547913 HPVLMSLAF 9 Unmodified _HPVLMSLAF_ 0 0 0 ENSG00000114395|ENST00000425346|CYB561D2 ENSG00000114395|ENST00000425346|CYB561D2 ENSG00000114395|ENST00000425346|CYB561D2 MSMS AL20221201_MKP_PDAC_01 4 507.7759094238281 2 507.775688 1013.53682 NaN NaN NaN NaN NaN NaN NaN 97.245 1 91.07 90.57 91.57 -6.1757 0 0 0 0.052454 1 64449 64449 56.541 18.39 1 20779 3036 14121 14391 24593 24593 0.03059605922112496 HPVLMVTGF 9 Oxidation (M) _HPVLM(Oxidation (M))VTGF_ HPVLM(1)VTGF HPVLM(67)VTGF 0 0 1 ENST00000468308.1_1_2:172378863-172407640:+|nuORF;ENST00000494587.1_1_2:172379052-172397400:+|nuORF;nc|ENSG00000071967|Q53TN4-2|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1 ENST00000468308.1_1_2:172378863-172407640:+|nuORF;ENSG00000071967|ENST00000321348|CYBRD1 ENSG00000071967|ENST00000321348|CYBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7662048339844 2 508.76532 1015.51609 -0.19451 -9.8958E-05 0.29664 0.00015092 0.10213 5.1962E-05 508.76549766938535 56.181 0.28792 56.113 55.942 56.23 -0.068737 24 14 3 0 0 0 0.016494 1 30519 30519 67.035 32.848 1 5409800 20780 13806;1065 14122 14392 24594 24594 175 0.00895015542459987 HPVLSLLSF 9 Unmodified _HPVLSLLSF_ 0 0 0 ENST00000582287.6_1_19:18545725-18546537:-|nuORF;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1;ENSG00000105655|ENST00000338128|ISYNA1 ENST00000582287.6_1_19:18545725-18546537:-|nuORF ENST00000582287.6_1_19:18545725-18546537:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.79541015625 2 506.794935 1011.57532 -0.069534 -3.5239E-05 1.3007 0.00065921 1.2312 0.00062397 506.7953808690927 85.322 0.23127 85.383 85.26 85.491 0.061638 13 8 2 0 0 0 0.013472 1 47250 47250 70.716 19.86 1 6519300 20781 2347 14123 14393 24595 24595 0.06999234828276713 HPVNAFKLM 9 Oxidation (M) _HPVNAFKLM(Oxidation (M))_ HPVNAFKLM(1) HPVNAFKLM(44) 0 0 1 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.784423828125 2 536.784044 1071.55354 -0.026127 -1.4025E-05 0.32925 0.00017673 0.30312 0.00016271 536.7848093802937 32.978 0.25196 33.008 32.888 33.14 0.029743 17 10 2 0 0 0 0.05447 1 17333 17333 43.858 23.405 1 2241100 20782 3668 14124 14394 24596 24596 643 0.020621068080572513 HPVNAFKLM 9 Oxidation (M) _HPVNAFKLM(Oxidation (M))_ HPVNAFKLM(1) HPVNAFKLM(44) 0 0 1 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7843017578125 2 536.784044 1071.55354 0.020243 1.0866E-05 0.63472 0.00034071 0.65497 0.00035158 536.7845338515236 33.252 0.24821 33.281 33.163 33.411 0.028931 21 10 3 0 0 0 0.05447 1 17508 17508 43.858 26.772 1 1883800 20783 3668 14124 14394 24597 24597 643 0.020621068080572513 HPVNAFKLM 9 Oxidation (M) _HPVNAFKLM(Oxidation (M))_ 0 0 1 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.784044 1071.55354 -0.34258 -0.00018389 2.8059 0.0015062 2.4633 0.0013223 537.2853729496395 33.503 0.099087 33.344 33.27 33.369 -0.15918 0.16792 0.0024635 NaN 43.858 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 353480 20784 3668 14124 14394 643 0.020621068080572513 HPVPHEARY 9 Unmodified _HPVPHEARY_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1898803710938 3 369.189435 1104.54648 0.76531 0.00028255 -0.59567 -0.00021991 0.16965 6.2631E-05 369.1890808839478 15.626 0.12164 13.099 13.044 13.165 -2.5273 51 29 2 0 0 0 0.039985 1 8019 8019 38.615 31.984 1 2565200 20785 1379 14125 14395 24598 24598 -0.0016148974816587724 HPVPLRKPKY 10 Unmodified _HPVPLRKPKY_ 0 0 0 nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;ENST00000530700.1_1_11:17536097-17542471:-|nuORF nc|ENSG00000006611|Q9Y6N9-4|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2527465820312 3 412.252147 1233.73461 0.86882 0.00035817 0.017265 7.1174E-06 0.88608 0.00036529 412.25199233027814 18.329 0.26212 15.708 15.582 15.844 -2.6215 35 19 3 0 0 0 0.56675 1 9597 9597 12.873 6.2491 1 3821300 20786 16012 14126 14396 24599 24599 0.12709368176274438 HPVPQPGY 8 Unmodified _HPVPQPGY_ 0 0 0 nc|ENSG00000205352|Q9NZ81-2|PRR13;ENSG00000205352|ENST00000429243|PRR13 nc|ENSG00000205352|Q9NZ81-2|PRR13 nc|ENSG00000205352|Q9NZ81-2|PRR13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7279357910156 2 447.727052 893.439552 0.95222 0.00042633 0.032655 1.4621E-05 0.98488 0.00044096 447.72703426439347 34.554 0.53925 30.459 30.196 30.735 -4.0951 66 31 3 0 0 0 0.74163 1 19827 19827 13.508 3.3245 1 63343000 20787 10363 14127 14397 24600 24600 -0.011430399625282917 HPVQHISF 8 Unmodified _HPVQHISF_ 0 0 0 nc|ENSG00000174989|Q8N3Y1-2|FBXW8;ENSG00000174989|ENST00000652555|FBXW8 nc|ENSG00000174989|Q8N3Y1-2|FBXW8 nc|ENSG00000174989|Q8N3Y1-2|FBXW8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7534790039062 2 482.753601 963.49265 0.77169 0.00037253 0.41673 0.00020118 1.1884 0.00057371 482.7536841384577 30.197 0.33737 30.116 29.895 30.232 -0.080429 25 12 3 0 0 0 0.30525 1 15633 15633 54.774 16.8 1 9536200 20788 8475 14128 14398 24601 24601 0.009443378201467567 HPVQIQTQL 9 Unmodified _HPVQIQTQL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2984619140625 2 532.298373 1062.58219 0.63481 0.00033791 0.708 0.00037687 1.3428 0.00071477 532.2987119335373 43.719 0.35758 38.954 38.709 39.066 -4.7648 40 21 2 0 0 0 0.013323 2 26463 26463;26585 71.134 17.867 1 19674000 20789 1070 14129 14399 24602;24603 24602 0.05340547708851773 HPVQKVILNY 10 Unmodified _HPVQKVILNY_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8522338867188 2 605.850773 1209.68699 -0.19903 -0.00012058 1.5815 0.00095817 1.3825 0.00083759 605.8517448758471 37.059 0.1902 37.081 36.963 37.153 0.021545 17 8 3 0 0 0 0.18021 1 19655 19655 36.127 19.561 1 2101800 20790 788 14130 14400 24604 24604 0.09053669185459512 HPVQKVILNY 10 Unmodified _HPVQKVILNY_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 605.850773 1209.68699 -0.17694 -0.0001072 1.9392 0.0011749 1.7623 0.0010677 605.8522929019725 37.387 0.16689 37.116 37.039 37.206 -0.27133 0.062825 0.00049394 NaN 36.127 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 997130 20791 788 14130 14400 0.09053669185459512 HPVQKVILNY 10 Unmodified _HPVQKVILNY_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 605.850773 1209.68699 0.67938 0.0004116 1.1433 0.00069267 1.8227 0.0011043 605.8518116879136 41.57 0.27594 36.963 36.868 37.144 -4.6079 -0.090526 -0.00047046 NaN 36.127 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 7449900 20792 788 14130 14400 0.09053669185459512 HPVQVEQDTF 10 Unmodified _HPVQVEQDTF_ 0 0 0 nc|ENSG00000184887|Q96KE9-1|BTBD6;ENSG00000184887|ENST00000392554|BTBD6;ENST00000412176.1_1_1:24227963-24228722:-|nuORF;nc|ENSG00000184887|Q96KE9-2|BTBD6 nc|ENSG00000184887|Q96KE9-1|BTBD6 nc|ENSG00000184887|Q96KE9-1|BTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2904663085938 2 600.288202 1198.56185 -0.65065 -0.00039058 1.9082 0.0011455 1.2576 0.0007549 600.2894462369668 33.75 0.28865 33.75 33.6 33.888 0 34 14 3 0 0 0 0.10424 1 17702 17702 45.7 24.163 1 4279500 20793 9296 14131 14401 24605 24605 -0.02948667741634381 HPVRDPVHMY 10 Unmodified _HPVRDPVHMY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8769836425781 3 417.54148 1249.60261 -0.47253 -0.0001973 -0.40932 -0.00017091 -0.88185 -0.00036821 417.54162485336053 24.606 0.26974 24.606 24.448 24.718 0 37 15 3 0 0 0 0.69377 1 12541 12541 3.5871 2.8105 1 2370100 20794 3740 14132 14402 24606 24606 -0.012206049029828137 HPVRDPVHMY 10 Unmodified _HPVRDPVHMY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.8760375976562 3 417.54148 1249.60261 0.17066 7.1258E-05 0.91166 0.00038066 1.0823 0.00045191 417.542199211445 24.806 0.092693 24.805 24.758 24.851 -0.0016766 5 3 2 0 0 0 0.48505 1 12703 12703 10.899 6.183 1 2725400 20795 3740 14132 14402 24607 24607 -0.012206049029828137 HPVRDPVHMY 10 Unmodified _HPVRDPVHMY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.5419006347656 3 417.54148 1249.60261 0.69917 0.00029193 -0.80927 -0.0003379 -0.1101 -4.5969E-05 417.54117563188333 27.769 0.58244 24.732 24.496 25.078 -3.0365 98 30 5 0 0 0 0.20962 3 15328 15328;15450;15576 34.222 29.325 1 240200000 20796 3740 14132 14402 24608;24609;24610 24608 -0.012206049029828137 HPVRDPVHMY 10 Unmodified _HPVRDPVHMY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.8084716796875 2 625.808582 1249.60261 0.21241 0.00013293 -0.35514 -0.00022225 -0.14273 -8.9323E-05 625.808277475486 27.788 0.35957 24.752 24.559 24.919 -3.0365 28 18 2 0 0 0 0.00019901 1 15372 15372 117.76 90.877 1 10240000 20797 3740 14132 14402 24611 24611 -0.012206049029828137 HPVRDPVHMY 10 Oxidation (M) _HPVRDPVHM(Oxidation (M))Y_ HPVRDPVHM(1)Y HPVRDPVHM(48)Y 0 0 1 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MSMS AL20221201_MKP_PDAC_01 4 633.8058471679688 2 633.806039 1265.59753 NaN NaN NaN NaN NaN NaN NaN 19.334 1 16.678 16.178 17.178 -2.6564 0 0 0 0.1448 1 10232 10232 47.594 38.211 1 20798 3740 14132 14403 24612 24612 654 -0.02464908765614382 HPVRVNVVQY 10 Unmodified _HPVRVNVVQY_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3402099609375 2 605.838197 1209.66184 -0.01728 -1.0469E-05 0.85568 0.00051841 0.8384 0.00050794 605.8388006177182 31.987 0.19496 31.857 31.745 31.94 -0.12915 11 7 2 0 0 0 0.2667 1 16651 16651 41.84 28.797 1 1287000 20799 6239;13571 14133 14404 24613 24613 0.06539614382859327 HPVRVNVVQY 10 Unmodified _HPVRVNVVQY_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8384399414062 2 605.838197 1209.66184 0.49194 0.00029804 0.49254 0.0002984 0.98448 0.00059644 605.8386529015114 36.147 0.26207 31.954 31.82 32.082 -4.1928 33 15 3 0 0 0 0.061704 1 21061 21061 74.929 49.53 1 7686800 20800 6239;13571 14133 14404 24614 24614 0.06539614382859327 HPVSASGP 8 Unmodified _HPVSASGP_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1900939941406 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 16.042 1 16.047 15.547 16.547 0.0050564 0 0 0 0.97348 1 8025 8025 5.7604 0 1 + 20801 17743 14134 14405 24615 24615 -0.01911588404993836 HPVSAVTPYG 10 Unmodified _HPVSAVTPYG_ 0 0 0 REV__nc|ENSG00000089157|P05388-2|RPLP0 REV__nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2642822265625 2 514.263999 1026.51345 0.12578 6.4685E-05 -0.16959 -8.7216E-05 -0.043812 -2.2531E-05 514.2638671287101 61.994 0.28014 61.994 61.842 62.122 0 25 11 3 0 0 0 0.60623 1 34542 34542 10.824 0 1 1964200 + 20802 17835 14135 14406 24616 24616 0.0012488340912568674 HPVSEGTLMY 10 Oxidation (M) _HPVSEGTLM(Oxidation (M))Y_ HPVSEGTLM(1)Y HPVSEGTLM(85)Y 0 0 1 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2675170898438 2 575.265881 1148.51721 -0.72452 -0.00041679 0.027443 1.5787E-05 -0.69708 -0.00040101 575.2660990353343 32.22 0.35162 32.22 32.023 32.374 0 56 17 4 0 0 0 0.011274 2 16757 16757;16869 85.357 43.783 1 36640000 20803 598 14136 14407 24617;24618 24617 86 -0.051108148792991415 HPVSEGTLMY 10 Oxidation (M) _HPVSEGTLM(Oxidation (M))Y_ HPVSEGTLM(1)Y HPVSEGTLM(64)Y 0 0 1 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2670288085938 2 575.265881 1148.51721 0.66398 0.00038196 0.086381 4.9692E-05 0.75036 0.00043166 575.2656834731666 36.579 0.53644 32.295 32.077 32.613 -4.2835 88 33 4 0 0 0 0.037795 2 21309 21309;21435 64.236 29.835 1 73833000 20804 598 14136 14407 24619;24620 24619 86 -0.051108148792991415 HPVSEGTLMY 10 Unmodified _HPVSEGTLMY_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2686157226562 2 567.268424 1132.5223 0.70296 0.00039877 -0.49672 -0.00028177 0.20625 0.000117 567.268100992184 44.286 0.59606 39.434 39.066 39.662 -4.852 107 41 3 0 0 0 0.037795 2 27029 26900;27029 64.236 37.353 1 79850000 20805 598 14136 14408 24621;24622 24622 -0.038665110166903105 HPVSEGTLMY 10 Unmodified _HPVSEGTLMY_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 567.268424 1132.5223 0.47377 0.00026875 1.4541 0.00082484 1.9278 0.0010936 567.2692949008155 39.218 0.24413 39.218 39.077 39.321 0 -0.10777 0.0021355 NaN 64.236 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1480200 20806 598 14136 14408 -0.038665110166903105 HPVSLEQYLM 10 Oxidation (M) _HPVSLEQYLM(Oxidation (M))_ HPVSLEQYLM(1) HPVSLEQYLM(92) 0 0 1 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.801513671875 2 616.802631 1231.59071 -0.27217 -0.00016788 -1.4935 -0.00092122 -1.7657 -0.0010891 616.801645445446 56.674 0.27825 56.189 56.071 56.349 -0.48554 23 15 2 0 0 0 0.0073675 1 30766 30766 92.491 52.534 1 7449300 20807 1696 14137 14409 24623 24623 292 -0.01582266436844293 HPVSLEQYLM 10 Oxidation (M) _HPVSLEQYLM(Oxidation (M))_ 0 0 1 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 616.802631 1231.59071 -0.065183 -4.0205E-05 -1.278 -0.00078825 -1.3431 -0.00082845 616.8024699162384 56.194 0.1334 56.194 56.071 56.204 0 0.0027397 0.0002291 NaN 92.491 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1267000 20808 1696 14137 14409 292 -0.01582266436844293 HPVSQARPF 9 Unmodified _HPVSQARPF_ 0 0 0 ENST00000588880.5_1_17:75137105-75137180:+|nuORF ENST00000588880.5_1_17:75137105-75137180:+|nuORF ENST00000588880.5_1_17:75137105-75137180:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7777099609375 2 519.777608 1037.54066 0.33008 0.00017157 0.35825 0.00018621 0.68834 0.00035778 519.7775901224136 24.184 0.27115 21.357 21.178 21.449 -2.8273 27 14 3 0 0 0 0.14 1 13158 13158 29.082 2.1979 1 4019100 20809 15656 14138 14410 24624 24624 0.023394117401721815 HPVSREWTL 9 Unmodified _HPVSREWTL_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7968139648438 2 562.795998 1123.57744 0.061813 3.4788E-05 0.75776 0.00042646 0.81957 0.00046125 562.7964577090797 37.499 0.38526 37.227 37.015 37.4 -0.27133 46 15 4 0 0 0 0.11784 2 19664 19664;19766 31.268 4.5373 1 13621000 20810 13944 14139 14411 24625;24626 24625 0.020596635660922402 HPVSREWTL 9 Unmodified _HPVSREWTL_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.795654296875 2 562.795998 1123.57744 0.87494 0.00049241 0.22175 0.0001248 1.0967 0.00061722 562.7960824367982 40.561 0.6144 36.032 35.742 36.356 -4.5294 106 37 4 0 0 0 0.025842 3 24109 24045;24109;24248 57.722 17.772 1 121230000 20811 13944 14139 14411 24627;24628;24629 24628 0.020596635660922402 HPVSSITGQDF 11 Unmodified _HPVSSITGQDF_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2890625 2 594.288202 1186.56185 0.45012 0.0002675 0.86706 0.00051528 1.3172 0.00078278 594.2892612459129 38.719 0.21365 38.719 38.556 38.77 0 14 9 3 0 0 0 0.00078105 1 20706 20706 85.642 51.539 1 1136500 20812 3365 14140 14412 24630 24630 -0.023966677416183302 HPVSSITGQDF 11 Unmodified _HPVSSITGQDF_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7893676757812 2 594.288202 1186.56185 0.055906 3.3224E-05 -0.046959 -2.7907E-05 0.0089472 5.3172E-06 594.2884338356927 39.119 0.16363 38.832 38.719 38.882 -0.28687 11 6 3 0 0 0 0.56638 1 20645 20645 13.042 3.6593 1 1918200 20813 3365 14140 14412 24631 24631 -0.023966677416183302 HPVSSITGQDF 11 Unmodified _HPVSSITGQDF_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2887573242188 2 594.288202 1186.56185 0.33104 0.00019673 0.24014 0.00014271 0.57118 0.00033945 594.288324648753 44.416 0.17082 39.564 39.517 39.688 -4.852 12 11 2 0 0 0 0.00013798 1 27115 27115 92.653 65.025 1 9395500 20814 3365 14140 14412 24632 24632 -0.023966677416183302 HPVSSITGQDF 11 Unmodified _HPVSSITGQDF_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MSMS AL20221201_MKP_PDAC_01 4 594.2888793945312 2 594.288202 1186.56185 NaN NaN NaN NaN NaN NaN NaN 44.606 1 39.754 39.254 40.254 -4.852 0 0 0 0.35958 1 27252 27252 29.841 11.694 1 20815 3365 14140 14412 24633 24633 -0.023966677416183302 HPVSWALDIL 10 Unmodified _HPVSWALDIL_ 0 0 0 ENST00000538753.5_1_12:6833477-6833820:+|nuORF ENST00000538753.5_1_12:6833477-6833820:+|nuORF ENST00000538753.5_1_12:6833477-6833820:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2125244140625 3 384.213358 1149.61824 NaN NaN NaN NaN NaN NaN NaN 19.498 1 19.526 19.026 20.026 0.028357 0 0 0 0.96981 1 9834 9834 1.9064 0.1641 1 20816 15009 14141 14413 24634 24634 0.04942004885697315 HPVTGQFLY 9 Unmodified _HPVTGQFLY_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC;ENST00000463356.5_1_3:195785139-195787086:-|nuORF ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2739868164062 2 531.274367 1060.53418 NaN NaN NaN NaN NaN NaN NaN 47.485 1 47.132 46.632 47.632 -0.3526 0 0 0 0.065563 1 25456 25456 52.268 23.782 1 20817 1077 14142 14414 24635 24635 0.006334737888209929 HPVTGQFLY 9 Unmodified _HPVTGQFLY_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC;ENST00000463356.5_1_3:195785139-195787086:-|nuORF ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2762451171875 2 531.274367 1060.53418 0.99579 0.00052904 1.1313 0.00060101 2.127 0.00113 531.2745066899151 52.73 0.22687 46.995 46.91 47.137 -5.7345 15 12 2 0 0 0 0.047196 1 33302 33302 46.021 11.919 1 18187000 20818 1077 14142 14414 24636 24636 0.006334737888209929 HPVTMRTITY 10 Unmodified _HPVTMRTITY_ 0 0 0 ENSG00000157881|ENST00000378466|PANK4 ENSG00000157881|ENST00000378466|PANK4 ENSG00000157881|ENST00000378466|PANK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8192138671875 2 609.818615 1217.62268 1.0979 0.0006695 -0.95405 -0.0005818 0.14382 8.7706E-05 609.818016876129 37.608 0.27344 33.239 33.091 33.364 -4.3689 26 16 2 0 0 0 0.023382 1 22064 22064 74.2 48.8 1 11135000 20819 6547 14143 14415 24637 24637 0.022571460369590568 HPVTVYNVS 9 Unmodified _HPVTVYNVS_ 0 0 0 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2639465332031 2 508.263999 1014.51345 -0.46688 -0.0002373 0.023673 1.2032E-05 -0.44321 -0.00022527 508.2641251458619 32.044 0.24356 32.044 31.94 32.184 0 21 11 2 0 0 0 0.28047 1 16747 16747 18.135 5.6034 1 1786600 20820 7397 14144 14416 24638 24638 0.006768834091303688 HPVTVYNVS 9 Unmodified _HPVTVYNVS_ 0 0 0 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2647705078125 2 508.263999 1014.51345 -0.29944 -0.0001522 0.48112 0.00024454 0.18168 9.2341E-05 508.26446839481713 32.026 0.34309 31.897 31.699 32.042 -0.12915 32 13 3 0 0 0 0.18465 2 16625 16625;16726 24.674 2.9272 1 9344500 20821 7397 14144 14416 24639;24640 24639 0.006768834091303688 HPVTVYNVS 9 Unmodified _HPVTVYNVS_ 0 0 0 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1;ENSG00000165861|ENST00000556143|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 nc|ENSG00000165861|Q9HBF4-3|ZFYVE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2643432617188 2 508.263999 1014.51345 0.74557 0.00037894 -0.8954 -0.0004551 -0.14983 -7.6154E-05 508.26394909436027 36.779 0.29639 32.496 32.353 32.65 -4.2835 33 17 2 0 0 0 0.28047 1 21595 21595 18.135 2.2878 1 10425000 20822 7397 14144 14416 24641 24641 0.006768834091303688 HPVVGDLTY 9 Unmodified _HPVVGDLTY_ 0 0 0 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 ENSG00000007376|ENST00000007264|RPUSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7589416503906 2 500.758549 999.502546 1.3166 0.00065929 -0.44484 -0.00022276 0.87174 0.00043653 500.7583145768172 49.581 0.48552 44.042 43.83 44.316 -5.5391 81 30 4 0 0 0 0.012158 2 31002 31002;31143 74.396 39.995 1 229330000 20823 364 14145 14417 24642;24643 24642 0.00277481034856919 HPVVHPLDLKY 11 Unmodified _HPVVHPLDLKY_ 0 0 0 ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 ENSG00000117697|ENST00000366977|NSL1 ENSG00000117697|ENST00000366977|NSL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2494812011719 3 439.915312 1316.72411 0.53912 0.00023717 -0.68119 -0.00029967 -0.14207 -6.2498E-05 440.24959265562643 45.189 0.25326 40.337 40.148 40.401 -4.852 26 16 3 0 0 0 0.020907 1 27712 27712 57.204 40.638 1 15147000 20824 3333 14146 14418 24644 24644 0.07841340731170021 HPVVHPLDLKY 11 Unmodified _HPVVHPLDLKY_ 0 0 0 ENSG00000117697|ENST00000366977|NSL1;ENST00000473995.5_1_1:212955642-212964952:-|nuORF;nc|ENSG00000117697|Q96IY1-2|NSL1 ENSG00000117697|ENST00000366977|NSL1 ENSG00000117697|ENST00000366977|NSL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 439.915312 1316.72411 0.38563 0.00016965 -0.42846 -0.00018849 -0.042827 -1.884E-05 439.91499927922683 40.915 0.17926 40.612 40.461 40.64 -0.30304 0.13747 0.00013139 NaN 57.204 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3011100 20825 3333 14146 14418 0.07841340731170021 HPVWALIYY 9 Unmodified _HPVWALIYY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3124389648438 2 581.30821 1160.60187 1.8972 0.0011029 0.3664 0.00021299 2.2636 0.0013159 581.308552739833 81.43 0.38845 81.49 81.315 81.704 0.059929 40 14 4 0 0 0 0.10734 2 44984 44984;45093 45.75 27.615 1 19150000 20826 2079 14147 14419 24645;24646 24645 0.027989237195924943 HPVWALIYY 9 Unmodified _HPVWALIYY_ 0 0 0 nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3096923828125 2 581.30821 1160.60187 1.2682 0.0007372 -1.1119 -0.00064636 0.15627 9.0842E-05 581.3077645930447 98.389 0.16009 92.214 92.148 92.308 -6.1757 26 10 3 0 0 0 0.070838 1 65241 65241 45.75 9.623 1 83830000 20827 2079 14147 14419 24647 24647 0.027989237195924943 HPVWGSQGSDL 11 Unmodified _HPVWGSQGSDL_ 0 0 0 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7813720703125 2 591.780544 1181.54654 0.40706 0.00024089 1.7101 0.001012 2.1172 0.0012529 591.7804027885817 40.222 0.16615 39.924 39.862 40.028 -0.29716 11 7 2 0 0 0 0.39949 1 21281 21281 21.537 5.3879 1 1204400 20828 10641 14148 14420 24648 24648 -0.03697534538787295 HPVWGSQGSDL 11 Unmodified _HPVWGSQGSDL_ 0 0 0 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.285400390625 2 591.780544 1181.54654 0.20271 0.00011996 1.4878 0.00088047 1.6905 0.0010004 592.283594062504 45.276 0.35098 40.322 40.059 40.41 -4.9549 39 23 2 0 0 0 0.00013798 1 27678 27678 92.653 44.905 1 19034000 20829 10641 14148 14420 24649 24649 -0.03697534538787295 HPVWGSQGSDL 11 Unmodified _HPVWGSQGSDL_ 0 0 0 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 MSMS AL20221201_MKP_PDAC_01 4 591.781005859375 2 591.780544 1181.54654 NaN NaN NaN NaN NaN NaN NaN 45.351 1 40.397 39.897 40.897 -4.9549 0 0 0 5.9642E-07 1 27822 27822 92.653 44.905 1 20830 10641 14148 14420 24650 24650 -0.03697534538787295 HPVYILKGGY 10 Unmodified _HPVYILKGGY_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.818359375 2 573.818941 1145.62333 0.12879 7.3905E-05 -0.67604 -0.00038793 -0.54725 -0.00031402 573.8184570415369 39.344 0.32891 39.057 38.925 39.254 -0.28687 30 15 3 0 0 0 0.017277 1 20727 20727 78.149 78.149 1 8732800 20831 4037 14149 14421 24651 24651 0.0563430874833557 HPVYILKGGY 10 Unmodified _HPVYILKGGY_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.819091796875 2 573.818941 1145.62333 0.26774 0.00015363 -0.16083 -9.2285E-05 0.10691 6.1349E-05 573.8188094267061 38.931 0.39491 38.943 38.779 39.174 0.011452 71 18 5 0 0 0 0.017277 2 20681 20681;20788 78.149 78.149 1 48551000 20832 4037 14149 14421 24652;24653 24652 0.0563430874833557 HPVYILKGGY 10 Unmodified _HPVYILKGGY_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8812866210938 3 382.88172 1145.62333 NaN NaN NaN NaN NaN NaN NaN 38.975 1 38.986 38.486 39.486 0.011452 0 0 0 0.83398 1 20746 20746 6.1918 0.89496 1 20833 4037 14149 14421 24654 24654 0.0563430874833557 HPVYILKGGY 10 Unmodified _HPVYILKGGY_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8202514648438 2 573.818941 1145.62333 0.76716 0.00044021 0.4322 0.00024801 1.1994 0.00068822 573.818950746737 43.41 0.62583 38.645 38.377 39.002 -4.7648 109 41 4 0 0 0 0.017277 3 26241 26241;26376;26505 78.149 71.134 1 165890000 20834 4037 14149 14421 24655;24656;24657 24655 0.0563430874833557 HPVYILKGGY 10 Unmodified _HPVYILKGGY_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8816833496094 3 382.88172 1145.62333 1.1238 0.00043028 0.065191 2.496E-05 1.189 0.00045524 382.88156723625536 43.42 0.42986 38.655 38.505 38.935 -4.7648 60 28 3 0 0 0 0.31022 2 26296 26296;26441 17.443 12.727 1 22706000 20835 4037 14149 14421 24658;24659 24658 0.0563430874833557 HPVYIVQEM 9 Unmodified _HPVYIVQEM_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1;ENSG00000125266|ENST00000646441|EFNB2 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MSMS AL20221201_MKP_PDAC_01 4 558.2832641601562 2 558.281334 1114.54812 NaN NaN NaN NaN NaN NaN NaN 54.752 1 48.887 48.387 49.387 -5.8653 0 0 0 0.13852 1 34771 34771 38.151 12.752 1 20836 1568 14150 14422 24660 24660 -0.004576167744289705 HPWASDYIL 9 Unmodified _HPWASDYIL_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2700805664062 2 551.271824 1100.5291 NaN NaN NaN NaN NaN NaN NaN 33.365 1 33.206 32.706 33.706 -0.15918 0 0 0 0.73776 1 17401 17401 7.9102 1.5561 1 + 20837 21434 14151 14423 24661 24661 -0.017148300738199396 HPWASPHFY 9 Unmodified _HPWASPHFY_ 0 0 0 REV__ENST00000397641.7_1_22:31321876-31321963:-|nuORF REV__ENST00000397641.7_1_22:31321876-31321963:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2619018554688 2 571.264333 1140.51411 NaN NaN NaN NaN NaN NaN NaN 21.401 1 21.429 20.929 21.929 0.028357 0 0 0 0.84369 1 10859 10859 2.3027 0.4585 1 + 20838 26540 14152 14424 24662 24662 -0.05052277151162343 HPWELFVKY 9 Unmodified _HPWELFVKY_ 0 0 0 nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8199462890625 2 609.818941 1217.62333 0.82936 0.00050576 1.3957 0.00085111 2.225 0.0013569 609.8204321434479 64.708 0.61967 64.708 64.52 65.14 1.5259E-05 84 30 5 0 0 0 0.0087873 3 35390 35390;35490;35600 103.35 84.097 1 89470000 20839 10178 14153 14425 24663;24664;24665 24663 0.02322308748330215 HPWELFVKY 9 Unmodified _HPWELFVKY_ 0 0 0 nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8819580078125 3 406.88172 1217.62333 0.44278 0.00018016 0.7005 0.00028502 1.1433 0.00046518 406.88194075099744 64.739 0.317 64.739 64.578 64.895 1.5259E-05 30 15 3 0 0 0 0.042911 1 35469 35469 36.506 22.891 1 4728800 20840 10178 14153 14425 24666 24666 0.02322308748330215 HPWELFVKY 9 Unmodified _HPWELFVKY_ 0 0 0 nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8193359375 2 609.818941 1217.62333 0.92128 0.00056181 0.38846 0.00023689 1.3097 0.0007987 609.8192187473089 90.865 0.99525 84.689 84.474 85.469 -6.1757 133 57 3 0 0 0 0.0059585 4 60341 59941;60078;60213;60341 114.65 98.5 1 69694000 20841 10178 14153 14425 24667;24668;24669;24670 24670 0.02322308748330215 HPWELFVKY 9 Unmodified _HPWELFVKY_ 0 0 0 nc|ENSG00000198863|Q96C34-2|RUNDC1;ENSG00000198863|ENST00000361677|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 nc|ENSG00000198863|Q96C34-2|RUNDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8821105957031 3 406.88172 1217.62333 1.2158 0.00049467 1.0619 0.00043207 2.2777 0.00092673 406.8819228896306 90.913 0.63982 84.737 84.505 85.145 -6.1757 50 37 2 0 0 0 0.042911 3 60137 59997;60137;60268 36.506 27.152 1 17447000 20842 10178 14153 14425 24671;24672;24673 24672 0.02322308748330215 HPWETGHCL 9 Carbamidomethyl (C) _HPWETGHC(Carbamidomethyl (C))L_ HPWETGHC(1)L HPWETGHC(89)L 0 1 0 ENSG00000092978|ENST00000366935|GPATCH2;nc|ENSG00000092978|Q9NW75-2|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.751953125 2 568.750733 1135.48691 0.80949 0.0004604 -0.76865 -0.00043717 0.040838 2.3227E-05 568.7504675851574 32.712 0.25938 28.856 28.715 28.974 -3.8562 20 13 2 0 0 0 0.0086179 1 18705 18705 89.427 67.68 1 7241700 20843 1626 14154 14426 24674 24674 156 -0.07541128753859994 HPWEVMPDLY 10 Oxidation (M) _HPWEVM(Oxidation (M))PDLY_ HPWEVM(1)PDLY HPWEVM(55)PDLY 0 0 1 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.7948608398438 2 651.794806 1301.57506 0.024877 1.6215E-05 0.74788 0.00048746 0.77275 0.00050368 651.7953100612754 58.475 0.33948 58.475 58.29 58.63 0 19 13 2 0 0 0 0.063761 1 32567 32567 54.774 35.517 1 1115100 20844 7706 14155 14427 24675 24675 1316 -0.0636655295388664 HPWEVMPDLY 10 Oxidation (M) _HPWEVM(Oxidation (M))PDLY_ HPWEVM(1)PDLY HPWEVM(71)PDLY 0 0 1 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.79541015625 2 651.794806 1301.57506 0.22789 0.00014854 -1.4704 -0.00095837 -1.2425 -0.00080983 651.794696665517 58.71 0.32066 58.219 58.07 58.391 -0.49079 35 15 3 0 0 0 0.024981 1 31898 31898 71.134 51.877 1 7680300 20845 7706 14155 14427 24676 24676 1316 -0.0636655295388664 HPWEVMPDLY 10 Oxidation (M) _HPWEVM(Oxidation (M))PDLY_ HPWEVM(1)PDLY HPWEVM(82)PDLY 0 0 1 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.7963256835938 2 651.794806 1301.57506 0.24843 0.00016192 -0.025279 -1.6477E-05 0.22315 0.00014545 651.7951098108099 59.103 0.35989 58.612 58.412 58.771 -0.49079 38 16 3 0 0 0 0.013474 1 32115 32115 81.613 58.877 1 5465400 20846 7706 14155 14427 24677 24677 1316 -0.0636655295388664 HPWEVMPDLY 10 Oxidation (M) _HPWEVM(Oxidation (M))PDLY_ HPWEVM(1)PDLY HPWEVM(93)PDLY 0 0 1 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.7958374023438 2 651.794806 1301.57506 0.89594 0.00058397 0.061408 4.0025E-05 0.95735 0.000624 651.7948465671655 64.819 0.71452 58.643 58.47 59.184 -6.1757 51 39 2 0 0 0 0.0071864 2 42030 42030;42248 92.822 65.193 1 12407000 20847 7706 14155 14427 24678;24679 24678 1316 -0.0636655295388664 HPWEVMPDLY 10 Oxidation (M) _HPWEVM(Oxidation (M))PDLY_ HPWEVM(1)PDLY HPWEVM(93)PDLY 0 0 1 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 651.79541015625 2 651.794806 1301.57506 NaN NaN NaN NaN NaN NaN NaN 65.309 1 59.133 58.633 59.633 -6.1757 0 0 0 0.026436 1 42382 42382 92.822 62.186 1 20848 7706 14155 14427 24680 24680 1316 -0.0636655295388664 HPWEVMPDLY 10 Unmodified _HPWEVMPDLY_ 0 0 0 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.7974243164062 2 643.797349 1285.58014 0.50357 0.0003242 -0.061241 -3.9427E-05 0.44233 0.00028477 643.7974493858104 73.133 0.37483 72.658 72.451 72.826 -0.47588 38 16 4 0 0 0 0.14917 2 39962 39962;40026 39.957 32.047 1 1787000 20849 7706 14155 14428 24681;24682 24681 -0.05122249091255071 HPWEVMPDLY 10 Unmodified _HPWEVMPDLY_ 0 0 0 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.7975463867188 2 643.797349 1285.58014 1.0099 0.00065018 -0.67833 -0.00043671 0.33159 0.00021347 643.7969417263794 89.558 0.99821 83.383 82.92 83.918 -6.1757 143 55 3 0 0 0 0.0020965 4 59033 58907;59033;59158;59283 108 86.46 1 46916000 20850 7706 14155 14428 24683;24684;24685;24686 24684 -0.05122249091255071 HPWEVMPDLY 10 Unmodified _HPWEVMPDLY_ 0 0 0 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000464073.1_1_14:77101363-77101567:-|nuORF;ENST00000416648.1_1_3:183605526-183606234:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 643.797349 1285.58014 0.17943 0.00011551 0.54357 0.00034995 0.723 0.00046546 643.7974797644047 72.517 0.19304 72.558 72.507 72.7 0.041725 -0.049656 0.00051767 NaN 39.957 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1194500 20851 7706 14155 14428 -0.05122249091255071 HPWEVMPEL 9 Unmodified _HPWEVMPEL_ 0 0 0 ENST00000494591.1_1_4:144346636-144346936:+|nuORF ENST00000494591.1_1_4:144346636-144346936:+|nuORF ENST00000494591.1_1_4:144346636-144346936:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8516540527344 3 379.851432 1136.53247 NaN NaN NaN NaN NaN NaN NaN 38.649 1 38.362 37.862 38.862 -0.28687 0 0 0 0.82015 1 20354 20354 2.9952 0 1 20852 14335 14156 14429 24687 24687 -0.03033903291475326 HPWEVTFEV 9 Unmodified _HPWEVTFEV_ 0 0 0 ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L ENSG00000185156|ENST00000329805|MFSD6L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2774047851562 2 572.277106 1142.53966 NaN NaN NaN NaN NaN NaN NaN 19.575 1 19.575 19.075 20.075 0 0 0 0 0.84564 1 9798 9798 2.0598 0 1 20853 9338 14157 14430 24688 24688 -0.02590847419378406 HPWIDLTSIGF 11 Unmodified _HPWIDLTSIGF_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3329467773438 2 643.332413 1284.65027 NaN NaN NaN NaN NaN NaN NaN 94.846 1 94.861 94.361 95.361 0.014244 0 0 0 0.062623 1 52702 52702 58.679 46.438 1 20854 2692 14158 14431 24689 24689 0.019333725688284176 HPWKWEWG 8 Unmodified _HPWKWEWG_ 0 0 0 REV__ENST00000251143.9_1_16:19621720-19627475:+|nuORF REV__ENST00000251143.9_1_16:19621720-19627475:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2645263671875 2 563.266876 1124.5192 NaN NaN NaN NaN NaN NaN NaN 20.481 1 20.509 20.009 21.009 0.028357 0 0 0 0.97444 1 10368 10368 0.79363 0.10326 1 + 20855 24885 14159 14432 24690 24690 -0.03807973288530775 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2457885742188 3 467.245832 1398.71567 -0.48243 -0.00022541 1.0065 0.0004703 0.5241 0.00024488 467.24605137606665 19.964 0.14728 19.993 19.921 20.068 0.028357 16 7 3 0 0 0 0.69848 1 10089 10089 3.0723 2.0587 1 604510 20856 5814 14160 14433 24691 24691 0.03225786814550702 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2256469726562 4 350.686193 1398.71567 -0.46502 -0.00016308 1.256 0.00044045 0.79095 0.00027738 350.6864978316134 19.948 0.1714 19.976 19.921 20.092 0.028355 17 8 3 0 0 0 0.23946 1 10106 10106 3.5871 2.1319 1 771480 20857 5814 14160 14433 24692 24692 0.03225786814550702 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2474365234375 3 467.245832 1398.71567 0.087158 4.0724E-05 0.9394 0.00043893 1.0266 0.00047966 467.2461322342435 20.033 0.14225 20.04 19.966 20.108 0.0078506 11 6 2 0 0 0 0.70244 1 10218 10218 2.6312 0.37851 1 920440 20858 5814 14160 14433 24693 24693 0.03225786814550702 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.6865234375 4 350.686193 1398.71567 -0.0077706 -2.725E-06 1.8125 0.00063561 1.8047 0.00063288 350.6865735539696 20.028 0.14225 20.036 19.966 20.108 0.0078506 12 6 3 0 0 0 0.71042 1 10219 10219 1.7423 0.41263 1 885020 20859 5814 14160 14433 24694 24694 0.03225786814550702 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2457885742188 3 467.245832 1398.71567 0.28571 0.0001335 0.36752 0.00017172 0.65323 0.00030522 467.246085860489 22.715 0.23924 19.937 19.792 20.031 -2.7784 26 18 2 0 0 0 0.42967 1 12187 12187 19.987 15.87 1 7419800 20860 5814 14160 14433 24695 24695 0.03225786814550702 HPWLKERDRY 10 Unmodified _HPWLKERDRY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MSMS AL20221201_MKP_PDAC_01 4 467.2463684082031 3 467.245832 1398.71567 NaN NaN NaN NaN NaN NaN NaN 22.825 1 20.046 19.546 20.546 -2.7784 0 0 0 0.75596 1 12304 12304 14.218 3.4187 1 20861 5814 14160 14433 24696 24696 0.03225786814550702 HPWLLTMR 8 Unmodified _HPWLLTMR_ 0 0 0 REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.8602905273438 3 351.860262 1052.55896 NaN NaN NaN NaN NaN NaN NaN 21.096 1 21.124 20.624 21.624 0.028357 0 0 0 0.97444 1 10696 10696 0.45834 0 1 + 20862 26413 14161 14434 24697 24697 0.03477830390534109 HPWSLDLC 8 Unmodified _HPWSLDLC_ 0 0 0 REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7216186523438 2 485.726195 969.437837 -0.18255 -8.8669E-05 -3.5763 -0.0017371 -3.7589 -0.0018258 485.72227178474594 21.999 0.11368 21.999 21.968 22.082 0 12 9 2 0 0 0 0.78849 1 11179 11179 9.3474 3.587 1 847660 + 20863 27193 14162 14435 24698 24698 -0.04810417042801873 HPWTHTERF 9 Unmodified _HPWTHTERF_ 0 0 0 ENSG00000133597|ENST00000072869|ADCK2 ENSG00000133597|ENST00000072869|ADCK2 ENSG00000133597|ENST00000072869|ADCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.1957702636719 3 404.19659 1209.56794 0.066344 2.6816E-05 -0.64769 -0.00026179 -0.58135 -0.00023498 404.1963309748829 25.835 0.30924 22.884 22.754 23.063 -2.9511 40 20 3 0 0 0 0.024507 1 14171 14171 59.052 42.487 1 18321000 20864 4520 14163 14436 24699 24699 -0.028461047194468847 HPWTHTERF 9 Unmodified _HPWTHTERF_ 0 0 0 ENSG00000133597|ENST00000072869|ADCK2 ENSG00000133597|ENST00000072869|ADCK2 ENSG00000133597|ENST00000072869|ADCK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 404.19659 1209.56794 -0.017195 -6.95E-06 -1.2852 -0.00051946 -1.3024 -0.00052641 404.5303284199192 23.129 0.113 23.141 23.072 23.185 0.012394 0.1285 -0.00058581 NaN 59.052 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3351700 20865 4520 14163 14436 -0.028461047194468847 HPWVLRVRCV 10 Unmodified _HPWVLRVRCV_ 0 0 0 REV__ENST00000527620.5_1_11:559022-559837:+|nuORF REV__ENST00000527620.5_1_11:559022-559837:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.8587036132812 2 632.858409 1263.70227 NaN NaN NaN NaN NaN NaN NaN 102.1 1 102.06 101.56 102.56 -0.045853 0 0 0 1.0024 1 56717 56717 0.40072 0 1 + 20866 28393 14164 14437 24700 24700 0.0809625750162013 HPWWREHLT 9 Unmodified _HPWWREHLT_ 0 0 0 ENST00000435744.5_1_21:14424137-14433010:+|nuORF;ENST00000414366.1_9:66699705-66708473:-|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7516479492188 3 421.212351 1260.61522 -0.76067 -0.0003204 0.65234 0.00027477 -0.10833 -4.5631E-05 421.2123765878197 77.646 0.16826 77.164 77.101 77.269 -0.4826 11 6 2 0 0 0 0.21874 1 42563 42563 1.1933 1.1933 1 367200 20867 13318 14165 14438 24701 24701 -0.004658254484638746 HPWWREHLT 9 Unmodified _HPWWREHLT_ 0 0 0 ENST00000435744.5_1_21:14424137-14433010:+|nuORF;ENST00000414366.1_9:66699705-66708473:-|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 421.212351 1260.61522 0.072926 3.0717E-05 -0.81531 -0.00034342 -0.74239 -0.0003127 421.21183230461753 77.137 0.14196 77.187 77.057 77.198 0.05011 0.01157 -0.0011236 NaN 1.1933 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 538050 20868 13318 14165 14438 -0.004658254484638746 HPWWRFKMLMT 11 Unmodified _HPWWRFKMLMT_ 0 0 0 ENST00000519775.2_1_8:144120944-144129230:+|nuORF ENST00000519775.2_1_8:144120944-144129230:+|nuORF ENST00000519775.2_1_8:144120944-144129230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9458618164062 4 383.946793 1531.75807 0.38643 0.00014837 -1.3903 -0.00053379 -1.0038 -0.00038542 383.94602576558856 40.699 0.24597 40.704 40.571 40.817 0.0050583 26 11 3 0 0 0 0.74096 1 21732 21732 0.40827 0 1 4185500 20869 14716 14166 14439 24702 24702 0.013457226269110834 HPWWRFKMLMT 11 Unmodified _HPWWRFKMLMT_ 0 0 0 ENST00000519775.2_1_8:144120944-144129230:+|nuORF ENST00000519775.2_1_8:144120944-144129230:+|nuORF ENST00000519775.2_1_8:144120944-144129230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9474792480469 4 383.946793 1531.75807 1.3968 0.0005363 -0.38914 -0.00014941 1.0077 0.00038689 383.94665453563374 83.345 0.43681 77.17 76.985 77.422 -6.1757 52 22 3 0 0 0 0.73237 1 54781 54781 1.2148 0.76031 1 16639000 20870 14716 14166 14439 24703 24703 0.013457226269110834 HPYAMSPSL 9 Oxidation (M) _HPYAM(Oxidation (M))SPSL_ HPYAM(1)SPSL HPYAM(82)SPSL 0 0 1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 ENSG00000111676|ENST00000396684|ATN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.736572265625 2 509.73676 1017.45897 -0.56719 -0.00028912 0.45125 0.00023002 -0.11595 -5.9102E-05 509.7366525547277 30.383 0.32177 30.383 30.181 30.503 0 30 15 4 0 0 0 0.0094915 1 15761 15761 81.864 35.843 1 3105700 20871 2813 14167 14440 24704 24704 492 -0.04906451733927497 HPYARHYYF 9 Unmodified _HPYARHYYF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5328979492188 3 418.533202 1252.57778 0.53084 0.00022217 -0.27753 -0.00011615 0.25331 0.00010602 418.5332139960126 27.767 0.20674 27.721 27.568 27.775 -0.046408 23 9 3 0 0 0 0.06187 1 14279 14279 38.176 27.277 1 10547000 20872 4865 14168 14441 24705 24705 -0.0384091671405713 HPYARHYYF 9 Unmodified _HPYARHYYF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5344848632812 3 418.533202 1252.57778 0.17341 7.2578E-05 0.18735 7.8412E-05 0.36076 0.00015099 418.53334865117296 27.583 0.23626 27.612 27.513 27.749 0.028664 35 10 4 0 0 0 0.042911 1 14319 14319 36.506 26.962 1 36707000 20873 4865 14168 14441 24706 24706 -0.0384091671405713 HPYARHYYF 9 Unmodified _HPYARHYYF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5335998535156 3 418.533202 1252.57778 1.2752 0.00053373 0.20277 8.4866E-05 1.478 0.00061859 418.53319721141327 30.412 0.37208 26.915 26.698 27.07 -3.497 52 18 4 0 0 0 0.070838 2 17086 17086;17201 36.506 26.962 1 70281000 20874 4865 14168 14441 24707;24708 24707 -0.0384091671405713 HPYARHYYF 9 Unmodified _HPYARHYYF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS AL20221201_MKP_PDAC_01 4 627.2964477539062 2 627.296165 1252.57778 NaN NaN NaN NaN NaN NaN NaN 30.422 1 26.925 26.425 27.425 -3.497 0 0 0 0.029091 1 17170 17170 67.344 32.412 1 20875 4865 14168 14441 24709 24709 -0.0384091671405713 HPYDSSHKEF 10 Unmodified _HPYDSSHKEF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1877136230469 3 416.18776 1245.54145 -0.66632 -0.00027731 0.54353 0.00022621 -0.12279 -5.1105E-05 416.1879304377797 16.842 0.24415 16.842 16.698 16.942 0 174 59 4 0 0 0 0.57893 2 8294 8192;8294 10.899 6.0019 1 5620600 20876 3760 14169 14442 24710;24711 24711 -0.07149838401437592 HPYDSSHKEF 10 Unmodified _HPYDSSHKEF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.1878051757812 3 416.18776 1245.54145 0.75198 0.00031296 -0.17858 -7.4321E-05 0.5734 0.00023864 416.18769469731836 17.668 0.26873 15.082 14.968 15.237 -2.5866 120 38 4 0 0 0 0.01105 2 9310 9206;9310 84.06 66.947 1 30973000 20877 3760 14169 14442 24712;24713 24713 -0.07149838401437592 HPYDSSHKEF 10 Unmodified _HPYDSSHKEF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 623.7782592773438 2 623.778002 1245.54145 NaN NaN NaN NaN NaN NaN NaN 17.688 1 15.101 14.601 15.601 -2.5866 0 0 0 0.48009 1 9272 9272 27.223 19.068 1 20878 3760 14169 14442 24714 24714 -0.07149838401437592 HPYEVAEVI 9 Unmodified _HPYEVAEVI_ 0 0 0 ENST00000465956.1_1_6:33384429-33385110:-|nuORF;nc|ENSG00000112514|O60888-3|CUTA;ENSG00000112514|ENST00000488034|CUTA;nc|ENSG00000112514|O60888-2|CUTA ENST00000465956.1_1_6:33384429-33385110:-|nuORF ENST00000465956.1_1_6:33384429-33385110:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7738647460938 2 528.771657 1055.52876 0.78015 0.00041252 1.6152 0.00085409 2.3954 0.0012666 528.7726755737784 49.515 0.34299 49.515 49.373 49.716 0 29 14 3 0 0 0 0.14602 1 27328 27328 28.487 5.3384 1 4809300 20879 2896 14170 14443 24715 24715 0.003217502063534994 HPYFNQRKL 9 Unmodified _HPYFNQRKL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5530395507812 3 401.552485 1201.63563 -0.038772 -1.5569E-05 1.0453 0.00041973 1.0065 0.00040416 401.5528547156849 21.938 0.22306 21.952 21.84 22.063 0.013796 16 9 2 0 0 0 0.016184 1 11247 11247 60.074 51.098 1 2594200 20880 6130 14171 14444 24716 24716 0.04287345211378124 HPYFNQRKL 9 Unmodified _HPYFNQRKL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5528259277344 3 401.552485 1201.63563 0.36097 0.00014495 0.58914 0.00023657 0.9501 0.00038152 401.5525647862201 24.619 0.39724 21.736 21.506 21.904 -2.8831 45 21 3 0 0 0 0.038285 1 13364 13364 62.573 47.324 1 11274000 20881 6130 14171 14444 24717 24717 0.04287345211378124 HPYFNRSKL 9 Unmodified _HPYFNRSKL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8772583007812 3 387.876969 1160.60908 -0.10489 -4.0683E-05 -0.34597 -0.00013419 -0.45085 -0.00017488 387.87690585312157 22.472 0.18257 22.495 22.419 22.602 0.022896 12 7 2 0 0 0 0.37578 1 11439 11439 13.615 8.318 1 1050700 20882 9767 14172 14445 24718 24718 0.03519656320031572 HPYFNRSKL 9 Unmodified _HPYFNRSKL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8768005371094 3 387.876969 1160.60908 0.077754 3.0159E-05 -0.31597 -0.00012256 -0.23822 -9.2398E-05 387.8768167347351 22.361 0.37455 22.379 22.137 22.512 0.01749 52 16 5 0 0 0 0.044042 1 11473 11473 47.732 27.317 1 14367000 20883 9767 14172 14445 24719 24719 0.03519656320031572 HPYFNRSKL 9 Unmodified _HPYFNRSKL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 387.876969 1160.60908 -0.37362 -0.00014492 0.82617 0.00032045 0.45255 0.00017553 387.87724972474894 22.518 0.08416 22.518 22.465 22.55 0 0.05373 0.0010306 NaN 47.732 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 219740 20884 9767 14172 14445 0.03519656320031572 HPYFVGVQF 9 Unmodified _HPYFVGVQF_ 0 0 0 ENSG00000047230|ENST00000359276|CTPS2 ENSG00000047230|ENST00000359276|CTPS2 ENSG00000047230|ENST00000359276|CTPS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7564697265625 2 547.276909 1092.53927 0.79738 0.00043639 2.5578 0.0013998 3.3552 0.0018362 547.7789816683226 66.739 0.32848 66.748 66.624 66.953 0.0095673 31 15 3 0 0 0 0.17666 1 36662 36662 19.439 3.5918 1 5834700 20885 679 14173 14446 24720 24720 -0.0033022234858890442 HPYGKGWDL 9 Unmodified _HPYGKGWDL_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2;nc|ENSG00000142627|P29317-2|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7640380859375 2 536.764166 1071.51378 0.69473 0.0003729 -1.6787 -0.00090108 -0.98401 -0.00052818 536.7637143176127 39.562 0.42619 35.111 34.84 35.267 -4.4509 38 25 2 0 0 0 0.10134 1 23449 23449 34.932 14.478 1 16143000 20886 5434 14174 14447 24721 24721 -0.019116968710022775 HPYILADRM 9 Unmodified _HPYILADRM_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1;ENST00000433214.2_1_10:88753296-88760106:+|nuORF ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2877197265625 2 558.286951 1114.55935 1.1106 0.00062001 0.57293 0.00031986 1.6835 0.00093987 558.2874211807125 42.813 0.43449 38.129 37.934 38.369 -4.6846 71 27 3 0 0 0 0.013396 2 25960 25821;25960 76.825 52.804 1 41457000 20887 7384 14175 14448 24722;24723 24723 0.006652053197285568 HPYIQYNVL 9 Unmodified _HPYIQYNVL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MSMS AL20221201_MKP_PDAC_01 4 573.8003540039062 2 573.800749 1145.58694 NaN NaN NaN NaN NaN NaN NaN 61.187 1 55.039 54.539 55.539 -6.1478 0 0 0 0.13852 1 39398 39398 38.151 15.415 1 20888 3879 14176 14449 24724 24724 0.01997431851600595 HPYIRKEEL 9 Unmodified _HPYIRKEEL_ 0 0 0 nc|ENSG00000168334|Q702N8-2|XIRP1;ENSG00000168334|ENST00000340369|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 nc|ENSG00000168334|Q702N8-2|XIRP1 MSMS AL20221201_MKP_PDAC_01 4 395.5673522949219 3 395.552262 1183.63496 NaN NaN NaN NaN NaN NaN NaN 21.115 1 18.422 17.922 18.922 -2.693 0 0 0 0.82739 1 11279 11279 2.4985 0 1 20889 7749 14177 14450 24725 24725 0.05048505771674172 HPYIYRVTF 9 Unmodified _HPYIYRVTF_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3157348632812 2 598.316566 1194.61858 0.86437 0.00051717 0.10694 6.3985E-05 0.97131 0.00058115 598.3164886664902 49.741 0.31686 49.693 49.549 49.865 -0.048824 57 15 5 0 0 0 0.040683 2 26848 26848;26962 49.554 20.473 1 32507000 20890 7744 14178 14451 24726;24727 24726 0.029054246055466137 HPYIYRVTF 9 Unmodified _HPYIYRVTF_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2140808105469 3 399.213469 1194.61858 0.83961 0.00033518 0.17966 7.1722E-05 1.0193 0.00040691 399.21353159073374 49.704 0.23717 49.655 49.568 49.805 -0.048824 18 11 2 0 0 0 0.1773 1 26885 26885 23.79 13.639 1 2683100 20891 7744 14178 14451 24728 24728 0.029054246055466137 HPYIYRVTF 9 Unmodified _HPYIYRVTF_ 0 0 0 nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3163452148438 2 598.316566 1194.61858 0.29014 0.00017359 0.58408 0.00034947 0.87422 0.00052306 598.3167985073874 54.812 0.34309 48.947 48.729 49.072 -5.8653 39 20 3 0 0 0 0.091924 2 34755 34755;34886 34.932 19.085 1 22846000 20892 7744 14178 14451 24729;24730 24729 0.029054246055466137 HPYKCTMC 8 Unmodified _HPYKCTMC_ 0 0 0 nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 982.7278442382812 1 982.39434 981.387064 0.52997 0.00052064 0.7327 0.0007198 1.2627 0.0012404 982.3979846075515 25.299 0.32157 25.323 25.241 25.562 0.024427 35 19 3 0 0 0 8.7369 1 13221 13221 2.8892 0 1 93511000 20893 5896 14179 14452 24731 24731 -0.10437405683671841 HPYLDEGRLRY 11 Unmodified _HPYLDEGRLRY_ 0 0 0 ENSG00000087095|ENST00000407008|NLK ENSG00000087095|ENST00000407008|NLK ENSG00000087095|ENST00000407008|NLK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.5773315429688 3 473.577359 1417.71025 -0.22257 -0.0001054 1.3032 0.00061717 1.0806 0.00051177 473.57784772577065 34.997 0.22535 34.774 34.669 34.895 -0.2224 28 9 4 0 0 0 0.074411 1 18303 18303 45.603 36.851 1 5798400 20894 1453 14180 14453 24732 24732 0.01810063232073844 HPYLDEGRLRY 11 Unmodified _HPYLDEGRLRY_ 0 0 0 ENSG00000087095|ENST00000407008|NLK ENSG00000087095|ENST00000407008|NLK ENSG00000087095|ENST00000407008|NLK MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.5774841308594 3 473.577359 1417.71025 0.63506 0.00030075 0.2569 0.00012166 0.89197 0.00042242 473.9116025212268 38.925 0.37708 34.474 34.298 34.675 -4.4509 40 23 2 0 0 0 0.14513 2 22966 22966;23096 37.251 28.007 1 25304000 20895 1453 14180 14453 24733;24734 24733 0.01810063232073844 HPYLFPVAAM 10 Unmodified _HPYLFPVAAM_ 0 0 0 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4;ENST00000537634.1_1_12:6700611-6701611:-|nuORF;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2950439453125 2 573.294245 1144.57394 1.4402 0.00082564 -0.76673 -0.00043956 0.67343 0.00038607 573.2928972644381 95.616 0.26984 89.44 89.299 89.569 -6.1757 25 16 2 0 0 0 0.32072 1 63387 63387 40.449 25.2 1 10433000 20896 7938;2803 14181 14454 24735 24735 0.007432774678591159 HPYLLAWCL 9 Unmodified _HPYLLAWCL_ 0 0 0 REV__ENST00000257868.9_1_12:56143473-56143599:+|nuORF REV__ENST00000257868.9_1_12:56143473-56143599:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2877807617188 2 558.288963 1114.56337 NaN NaN NaN NaN NaN NaN NaN 38.647 1 38.36 37.86 38.86 -0.28687 0 0 0 0.24185 1 20353 20353 28.173 6.4266 1 + 20897 24933 14182 14455 24736 24736 0.010672948134470062 HPYMKDLNAL 10 Unmodified _HPYMKDLNAL_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 601.3396606445312 2 601.305341 1200.59613 -0.32566 -0.00019582 2.4274 0.0014596 2.1018 0.0012638 601.3062972971916 45.24 0.37832 40.285 40.086 40.464 -4.9549 42 25 2 0 0 0 0.14371 1 27641 27641 43.772 21.036 1 15084000 20898 2083 14183 14456 24737 24737 0.003854571456258782 HPYNNNTNF 9 Unmodified _HPYNNNTNF_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3912804-3919778:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.745361328125 2 560.743962 1119.47337 NaN NaN NaN NaN NaN NaN NaN 23.039 1 23.039 22.539 23.539 0 0 0 0 0.7243 1 11734 11734 8.5933 3.3626 1 20899 1133 14184 14457 24738 24738 -0.08158663261428956 HPYPCSKAL 9 Carbamidomethyl (C) _HPYPC(Carbamidomethyl (C))SKAL_ HPYPC(1)SKAL HPYPC(60)SKAL 0 1 0 ENSG00000099377|ENST00000297679|HSD3B7;nc|ENSG00000099377|Q9H2F3-2|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7662963867188 2 536.765852 1071.51715 0.098719 5.2989E-05 0.5338 0.00028653 0.63252 0.00033952 536.7662543009263 23.699 0.34957 20.872 20.708 21.058 -2.8273 40 21 3 0 0 0 0.023481 1 12804 12804 60.074 37.338 1 5252400 20900 1698 14185 14458 24739 24739 164 -0.01574770088677724 HPYPDLPSRF 10 Unmodified _HPYPDLPSRF_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.3112182617188 2 614.809105 1227.60366 0.80271 0.00049351 -0.14063 -8.6463E-05 0.66207 0.00040705 614.8089218700919 47.181 0.29385 46.828 46.645 46.938 -0.3526 25 14 2 0 0 0 0.30604 1 25262 25262 37.075 26.251 1 4282400 20901 10560 14186 14459 24740 24740 -0.0010406726246401377 HPYPHNHYM 9 Unmodified _HPYPHNHYM_ 0 0 0 nc|ENSG00000164442|Q99967-2|CITED2;ENSG00000164442|ENST00000367651|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 nc|ENSG00000164442|Q99967-2|CITED2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 399.5396728515625 3 399.174909 1194.5029 0.70711 0.00028226 0.84667 0.00033797 1.5538 0.00062023 399.1752141721208 18.073 0.18265 15.452 15.341 15.524 -2.6215 22 12 2 0 0 0 0.18811 1 9508 9508 17.113 14.378 1 3793000 20902 7196 14187 14460 24741 24741 -0.08657422516967017 HPYPPGPGVAL 11 Unmodified _HPYPPGPGVAL_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7954711914062 2 552.795466 1103.57638 0.69015 0.00038151 -0.056497 -3.1232E-05 0.63365 0.00035028 552.794974879664 47.37 0.38702 47.37 47.192 47.579 0 35 17 3 0 0 0 0.26781 1 25914 25914 28.487 10.34 1 1657200 20903 8116 14188 14461 24742 24742 0.028734491971817988 HPYPPGPGVAL 11 Unmodified _HPYPPGPGVAL_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.794921875 2 552.795466 1103.57638 0.76144 0.00042092 0.081957 4.5305E-05 0.8434 0.00046623 552.7954289218925 47.627 0.47566 47.274 47.02 47.496 -0.3526 53 22 3 0 0 0 0.0055318 2 25572 25476;25572 74.396 38.352 1 11050000 20904 8116 14188 14461 24743;24744 24744 0.028734491971817988 HPYPPGPGVAL 11 Unmodified _HPYPPGPGVAL_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.796142578125 2 552.795466 1103.57638 0.88575 0.00048964 1.5335 0.00084772 2.4193 0.0013374 552.7964167360121 53.056 0.65782 47.251 46.84 47.498 -5.8042 58 37 2 0 0 0 0.03764 2 33416 33416;33530 53.576 19.473 1 52694000 20905 8116 14188 14461 24745;24746 24745 0.028734491971817988 HPYQFLLKY 9 Unmodified _HPYQFLLKY_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.826171875 2 604.826766 1207.63898 -0.44718 -0.00027047 -0.31969 -0.00019336 -0.76687 -0.00046382 604.8267528222713 55.922 0.48801 55.853 55.548 56.036 -0.068737 71 25 4 0 0 0 0.018301 2 30367 30367;30471 65.235 43.698 1 116480000 20906 1548 14189 14462 24747;24748 24747 0.0434659526536052 HPYQFLLKY 9 Unmodified _HPYQFLLKY_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8882446289062 3 403.553603 1207.63898 -0.62389 -0.00025177 1.0713 0.00043231 0.44737 0.00018054 403.55391051241673 55.939 0.29288 55.871 55.743 56.036 -0.068741 31 15 3 0 0 0 0.042911 2 30376 30376;30488 36.506 29.029 1 8457000 20907 1548 14189 14462 24749;24750 24749 0.0434659526536052 HPYQFLLKY 9 Unmodified _HPYQFLLKY_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.826416015625 2 604.826766 1207.63898 0.44134 0.00026693 -0.029717 -1.7974E-05 0.41162 0.00024896 604.8268324416173 80.892 0.62531 74.716 74.585 75.21 -6.1757 100 35 4 0 0 0 0.009483 3 53059 53059;53181;53313 81.89 61.437 1 103550000 20908 1548 14189 14462 24751;24752;24753 24751 0.0434659526536052 HPYQFLLKY 9 Unmodified _HPYQFLLKY_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENST00000556641.5_1_14:99959014-99967243:+|nuORF;ENST00000557165.5_1_14:99959014-99968584:+|nuORF ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.553955078125 3 403.553603 1207.63898 0.98621 0.00039799 0.28633 0.00011555 1.2725 0.00051354 403.553703686629 80.994 0.49399 74.818 74.566 75.06 -6.1757 46 27 2 0 0 0 0.06187 2 53065 53065;53185 31.268 25.434 1 40548000 20909 1548 14189 14462 24754;24755 24754 0.0434659526536052 HPYQPDPKM 9 Unmodified _HPYQPDPKM_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7630004882812 2 556.763309 1111.51206 0.33575 0.00018694 0.53221 0.00029632 0.86797 0.00048325 556.7636690112219 24.059 0.4016 21.232 21.008 21.41 -2.8273 71 22 4 0 0 0 0.040683 2 12968 12968;13086 49.554 40.171 1 50300000 20910 5359 14190 14463 24756;24757 24756 -0.039230739512731816 HPYQPDPKM 9 Unmodified _HPYQPDPKM_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.5116577148438 3 371.511298 1111.51206 0.79806 0.00029649 0.43641 0.00016213 1.2345 0.00045862 371.51147681850057 24.05 0.42036 21.222 21.008 21.428 -2.8273 68 23 4 0 0 0 0.07916 1 13052 13052 28.495 22.289 1 26409000 20911 5359 14190 14463 24758 24758 -0.039230739512731816 HPYQYELNHF 10 Unmodified _HPYQYELNHF_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.3097534179688 2 674.309469 1346.60439 0.53 0.00035738 -0.53258 -0.00035912 -0.0025779 -1.7383E-06 674.3090112231663 46.016 0.22589 41.061 40.922 41.148 -4.9549 20 14 2 0 0 0 0.021497 1 28308 28308 75.571 59.421 1 8139400 20912 8147 14191 14464 24759 24759 -0.055052726133908436 HPYRAFPVL 9 Unmodified _HPYRAFPVL_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3070678710938 2 550.306001 1098.59745 1.109 0.00061029 0.28894 0.000159 1.3979 0.00076929 550.3061006383678 49.849 0.31842 49.8 49.609 49.927 -0.048824 50 15 4 0 0 0 0.019303 2 26894 26894;26995 64.236 35.155 1 11257000 20913 3750 14192 14465 24760;24761 24760 0.052094592967023345 HPYRAFPVL 9 Unmodified _HPYRAFPVL_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2066040039062 3 367.206426 1098.59745 1.0397 0.00038179 -0.5282 -0.00019396 0.51152 0.00018783 367.2062293632464 49.824 0.20084 49.775 49.665 49.865 -0.048828 14 9 2 0 0 0 0.54444 1 26955 26955 5.2969 3.2109 1 886060 20914 3750 14192 14465 24762 24762 0.052094592967023345 HPYRAFPVL 9 Unmodified _HPYRAFPVL_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MSMS AL20221201_MKP_PDAC_01 4 550.3031005859375 2 550.306001 1098.59745 NaN NaN NaN NaN NaN NaN NaN 81.867 1 75.691 75.191 76.191 -6.1757 0 0 0 0.12337 1 53757 53757 39.957 5.8549 1 20915 3750 14192 14465 24763 24763 0.052094592967023345 HPYRPLLQY 9 Unmodified _HPYRPLLQY_ 0 0 0 ENSG00000112237|ENST00000520429|CCNC;nc|ENSG00000112237|P24863-2|CCNC ENSG00000112237|ENST00000520429|CCNC ENSG00000112237|ENST00000520429|CCNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.822021484375 2 593.822015 1185.62948 0.72753 0.00043203 -0.62678 -0.0003722 0.10075 5.9828E-05 593.8217447314348 40.627 0.16293 40.324 40.234 40.397 -0.30304 15 7 3 0 0 0 0.085319 1 21479 21479 32.305 22.922 1 1909000 20916 2871 14193 14466 24764 24764 0.04408826979852165 HPYRPLLQY 9 Unmodified _HPYRPLLQY_ 0 0 0 ENSG00000112237|ENST00000520429|CCNC;nc|ENSG00000112237|P24863-2|CCNC ENSG00000112237|ENST00000520429|CCNC ENSG00000112237|ENST00000520429|CCNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8229370117188 2 593.822015 1185.62948 0.26186 0.0001555 0.84776 0.00050342 1.1096 0.00065892 593.8224531945375 40.281 0.27511 40.286 40.149 40.424 0.0050545 28 12 3 0 0 0 0.01958 1 21446 21446 71.134 49.387 1 5935100 20917 2871 14193 14466 24765 24765 0.04408826979852165 HPYRPLLQY 9 Unmodified _HPYRPLLQY_ 0 0 0 ENSG00000112237|ENST00000520429|CCNC;nc|ENSG00000112237|P24863-2|CCNC ENSG00000112237|ENST00000520429|CCNC ENSG00000112237|ENST00000520429|CCNC MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.82373046875 2 593.822015 1185.62948 0.29456 0.00017492 0.71606 0.00042521 1.0106 0.00060013 593.8224146333935 44.809 0.29409 39.957 39.775 40.069 -4.852 39 23 2 0 0 0 0.012668 2 27305 27305;27440 61.357 39.82 1 14615000 20918 2871 14193 14466 24766;24767 24766 0.04408826979852165 HPYSQALIQY 10 Unmodified _HPYSQALIQY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.3096313476562 2 610.308938 1218.60332 0.69287 0.00042287 -0.2243 -0.00013689 0.46858 0.00028598 610.3086560973605 46.067 0.26827 46.067 45.918 46.186 0 20 12 2 0 0 0 0.087043 1 25158 25158 49.554 28.017 1 2901800 20919 2632 14194 14467 24768 24768 0.0027651301770674763 HPYSQALIQY 10 Unmodified _HPYSQALIQY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3104858398438 2 610.308938 1218.60332 0.56134 0.00034259 -0.15806 -9.6465E-05 0.40328 0.00024613 610.3086866515296 46.361 0.30885 46.025 45.86 46.169 -0.33664 52 15 4 0 0 0 0.027759 2 24759 24759;24858 69.105 49.743 1 68940000 20920 2632 14194 14467 24769;24770 24769 0.0027651301770674763 HPYSQALIQY 10 Unmodified _HPYSQALIQY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.3099975585938 2 610.308938 1218.60332 0.78331 0.00047806 0.48376 0.00029525 1.2671 0.00077331 610.3091218800835 46.133 0.24011 46.105 45.948 46.189 -0.028011 25 10 3 0 0 0 0.087043 1 24785 24785 49.554 28.017 1 3903300 20921 2632 14194 14467 24771 24771 0.0027651301770674763 HPYSQALIQY 10 Unmodified _HPYSQALIQY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.310302734375 2 610.308938 1218.60332 0.31185 0.00019032 0.34041 0.00020776 0.65226 0.00039808 610.3090672090119 51.907 0.42723 46.173 45.951 46.378 -5.7345 73 28 3 0 0 0 0.0046054 2 32603 32603;32746 99.755 59.806 1 251040000 20922 2632 14194 14467 24772;24773 24772 0.0027651301770674763 HPYTWRIEL 9 Unmodified _HPYTWRIEL_ 0 0 0 nc|ENSG00000214517|Q9Y570-2|PPME1;ENSG00000214517|ENST00000328257|PPME1;nc|ENSG00000214517|Q9Y570-4|PPME1;ENST00000538501.5_1_11:73950145-73964552:+|nuORF;nc|ENSG00000214517|Q9Y570-3|PPME1;ENST00000541340.5_1_11:73950145-73962300:+|nuORF nc|ENSG00000214517|Q9Y570-2|PPME1 nc|ENSG00000214517|Q9Y570-2|PPME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3218994140625 2 607.819473 1213.62439 0.35983 0.00021871 0.9604 0.00058375 1.3202 0.00080246 607.8203708612083 59.615 0.21494 59.562 59.479 59.694 -0.053062 17 10 2 0 0 0 0.07087 1 32510 32510 39.95 10.868 1 5871500 20923 10496 14195 14468 24774 24774 0.026125231172500207 HQARCENQDL 10 Unmodified _HQARCENQDL_ 0 0 0 ENSG00000176774|ENST00000325250|MAGEB18 ENSG00000176774|ENST00000325250|MAGEB18 ENSG00000176774|ENST00000325250|MAGEB18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.273193359375 2 607.272561 1212.53057 -0.050678 -3.0775E-05 0.87538 0.0005316 0.8247 0.00050082 607.273091120695 76.499 0.39272 76.499 76.315 76.708 0 55 15 5 0 0 0 0.35903 1 42577 42577 24.021 2.2739 1 9003900 20924 8622 14196 14469 24775 24775 -0.0671956404737557 HQDFFQKLDI 10 Unmodified _HQDFFQKLDI_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MSMS AL20221201_MKP_PDAC_01 4 430.8884887695312 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 14.823 1 12.296 11.796 12.796 -2.5273 0 0 0 0.96981 1 7556 7556 1.9064 0 1 + 20925 22790 14197 14470 24776 24776 0.007201845634881465 HQEGTSSDD 9 Unmodified _HQEGTSSDD_ 0 0 0 ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-2|GCFC2;GCFC2|p.V549Sfs*42|1|0.17|ENSG00000005436|chr2:75687872-75687873|-/T|frameshift_variant ENSG00000005436|ENST00000321027|GCFC2 ENSG00000005436|ENST00000321027|GCFC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.230224609375 2 488.186143 974.357732 -0.46093 -0.00022502 2.23 0.0010887 1.7691 0.00086365 488.18736932750664 27.056 0.16831 27.056 26.952 27.12 0 13 7 2 0 0 0 0.19205 1 13901 13901 14.838 6.245 1 1147100 20926 307 14198 14471 24777 24777 -0.13047231902942258 HQERTMVYV 9 Unmodified _HQERTMVYV_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7900390625 2 581.787315 1161.56008 NaN NaN NaN NaN NaN NaN NaN 65.714 1 65.229 64.729 65.729 -0.48428 0 0 0 0.50124 1 35873 35873 15.847 1.9411 1 + 20927 18433 14199 14472 24778 24778 -0.014240000312156553 HQEWFTKYFSF 11 Unmodified _HQEWFTKYFSF_ 0 0 0 ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B ENSG00000047662|ENST00000265018|FAM184B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 760.3550415039062 2 760.353877 1518.6932 0.30198 0.00022961 0.31802 0.00024181 0.62 0.00047142 760.3542464064316 38.539 0.34995 38.556 38.374 38.724 0.01704 52 16 4 0 0 0 0.67892 1 20555 20555 11.495 6.1978 1 40649000 20928 692 14200 14473 24779 24779 -0.045398573737429615 HQGGQFEQHF 10 Unmodified _HQGGQFEQHF_ 0 0 0 ENST00000474985.5_1_2:33809845-33813599:-|nuORF;ENSG00000119812|ENST00000238823|FAM98A ENST00000474985.5_1_2:33809845-33813599:-|nuORF ENST00000474985.5_1_2:33809845-33813599:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.515625 3 405.5161 1213.52647 -0.5175 -0.00020986 0.69456 0.00028165 0.17705 7.1797E-05 405.51610869742274 25.537 0.16663 25.537 25.447 25.613 0 14 7 3 0 0 0 0.62068 1 13102 13102 5.7834 4.5686 1 733060 20929 3472 14201 14474 24780 24780 -0.0717528547877464 HQHWQKRRF 9 Unmodified _HQHWQKRRF_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.5704650878906 3 441.570762 1321.69046 0.4303 0.00019001 -0.32267 -0.00014248 0.10764 4.7531E-05 441.57046932917564 22.015 0.144 22.029 21.941 22.085 0.013796 9 5 2 0 0 0 0.57757 1 11316 11316 2.7352 0.82882 1 510690 20930 10049 14202 14475 24781 24781 0.04247776802640146 HQILETVEL 9 Unmodified _HQILETVEL_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2964477539062 2 541.298039 1080.58152 0.20374 0.00011029 0.6129 0.00033176 0.81665 0.00044205 541.2983816518259 65.003 0.36807 64.519 64.295 64.663 -0.48428 39 16 3 0 0 0 0.19349 1 35419 35419 31.268 7.4786 1 5678700 20931 10553 14203 14476 24782 24782 0.04445708269145143 HQIRNKQCR 9 Unmodified _HQIRNKQCR_ 0 0 0 ENSG00000053328|ENST00000338882|METTL24 ENSG00000053328|ENST00000338882|METTL24 ENSG00000053328|ENST00000338882|METTL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8805236816406 3 394.880607 1181.61999 0.10038 3.964E-05 -0.356 -0.00014058 -0.25561 -0.00010094 394.8801812291682 39.437 0.25393 39.437 39.321 39.575 0 17 11 2 0 0 0 0.30562 1 21132 21132 11.495 1.3441 1 4573200 20932 743 14204 14477 24783 24783 0.036447354226538664 HQIVTDFYN 9 Unmodified _HQIVTDFYN_ 0 0 0 ENSG00000181885|ENST00000360325|CLDN7;nc|ENSG00000181885|O95471-2|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3008422851562 2 568.772188 1135.52982 1.129 0.00064217 -1.4269 -0.00081157 -0.29784 -0.0001694 568.7712117820582 47.09 0.66695 47.056 46.919 47.586 -0.033417 37 32 2 0 0 0 0.16785 1 25659 25659 23.148 6.2061 1 10167000 20933 9003 14205 14478 24784 24784 -0.03252035424748101 HQKVYTYI 8 Unmodified _HQKVYTYI_ 0 0 0 nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4 nc|ENSG00000010219|Q9NR20-5|DYRK4 nc|ENSG00000010219|Q9NR20-5|DYRK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1903686523438 3 351.190553 1050.54983 NaN NaN NaN NaN NaN NaN NaN 18.45 1 18.473 17.973 18.973 0.023106 0 0 0 0.97444 1 9252 9252 1.6526 0.45928 1 20934 414 14206 14479 24785 24785 0.026577603058285604 HQLELKFER 9 Unmodified _HQLELKFER_ 0 0 0 nc|ENSG00000188659|Q658L1-2|SAXO2;nc|ENSG00000188659|Q658L1|SAXO2;ENSG00000188659|ENST00000682753|SAXO2 nc|ENSG00000188659|Q658L1-2|SAXO2 nc|ENSG00000188659|Q658L1-2|SAXO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5555725097656 3 400.555895 1198.64586 0.51875 0.00020779 -0.45044 -0.00018043 0.068304 2.736E-05 400.55566770445614 56.186 1.1328 50.209 49.763 50.896 -5.9769 100 65 2 0 0 0 0.15882 1 35750 35750 27.223 2.2323 1 34852000 20935 9682 14207 14480 24786 24786 0.054479081459248846 HQLGCEAVTLL 11 Unmodified _HQLGCEAVTLL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3125 2 592.310623 1182.60669 0.054033 3.2005E-05 1.6383 0.00097037 1.6923 0.0010024 592.3119006441773 79.67 0.24695 79.725 79.602 79.849 0.054977 24 9 3 0 0 0 0.39949 1 44010 44010 21.537 8.0291 1 3644000 20936 1160 14208 14481 24787 24787 0.022694398000794536 HQLGPLHI 8 Unmodified _HQLGPLHI_ 0 0 0 REV__ENST00000505276.2_1_12:3407303-3409365:-|nuORF REV__ENST00000505276.2_1_12:3407303-3409365:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.7648620605469 2 457.763969 913.513385 NaN NaN NaN NaN NaN NaN NaN 49.895 1 44.356 43.856 44.856 -5.5391 0 0 0 0.47265 1 31226 31226 42.968 0 1 + 20937 28068 14209 14482 24788 24788 0.05316928199795257 HQLLQVPPF 9 Unmodified _HQLLQVPPF_ 0 0 0 REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2 REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2078857421875 3 360.206315 1077.59712 1.1444 0.00041223 0.3179 0.00011451 1.4623 0.00052674 360.20644375732167 45.066 0.35037 40.214 40.036 40.387 -4.852 41 22 2 0 0 0 0.53666 1 27557 27557 2.9952 0.26005 1 20554000 + 20938 18996 14210 14483 24789 24789 0.06142039576843672 HQLLYFSVYF 10 Unmodified _HQLLYFSVYF_ 0 0 0 ENST00000337451.7_1_15:23005397-23005541:-|nuORF ENST00000337451.7_1_15:23005397-23005541:-|nuORF ENST00000337451.7_1_15:23005397-23005541:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.8382568359375 2 658.837331 1315.66011 NaN NaN NaN NaN NaN NaN NaN 88.381 1 88.435 87.935 88.935 0.053352 0 0 0 0.83398 1 49169 49169 10.824 2.6684 1 20939 11928 14211 14484 24790 24790 0.014905605742114858 HQLNVVIHQL 10 Unmodified _HQLNVVIHQL_ 0 0 0 ENSG00000169914|ENST00000375120|OTUD3;ENST00000466697.1_1_1:20216953-20224263:+|nuORF ENSG00000169914|ENST00000375120|OTUD3 ENSG00000169914|ENST00000375120|OTUD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.9009399414062 3 400.899773 1199.67749 1.1403 0.00045716 2.2391 0.00089766 3.3794 0.0013548 400.90145877689895 55.592 0.26758 49.671 49.573 49.84 -5.9211 38 15 3 0 0 0 0.41822 1 35443 35443 20.581 1.437 1 12819000 20940 7927 14212 14485 24791 24791 0.08563900899889632 HQMCFRDYKY 10 Unmodified _HQMCFRDYKY_ 0 0 0 ENSG00000065325|ENST00000262441|GLP2R ENSG00000065325|ENST00000262441|GLP2R ENSG00000065325|ENST00000262441|GLP2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2057800292969 3 464.20588 1389.59581 0.52182 0.00024223 -1.8581 -0.00086254 -1.3363 -0.0006203 464.20498133223595 28.222 0.33355 25.074 24.878 25.212 -3.1482 36 17 3 0 0 0 0.70895 1 15671 15671 1.9064 0.31409 1 13650000 20941 898 14213 14486 24792 24792 -0.08340285845883955 HQNWSHSHTA 10 Unmodified _HQNWSHSHTA_ 0 0 0 REV__ENST00000467312.1_1_9:131483560-131485040:-|nuORF REV__ENST00000467312.1_1_9:131483560-131485040:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1804809570312 3 402.179599 1203.51697 NaN NaN NaN NaN NaN NaN NaN 4.7327 1 4.6598 4.1598 5.1598 -0.072869 0 0 0 1.0024 1 2338 2338 0.13989 0.017027 1 + 20942 27430 14214 14487 24793 24793 -0.07665053764299046 HQPEPQCQY 9 Unmodified _HQPEPQCQY_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2437744140625 2 565.240198 1128.46584 0.4098 0.00023163 0.80828 0.00045687 1.2181 0.00068851 565.2407526708644 65.5 0.57432 59.324 59.02 59.594 -6.1757 116 32 6 0 0 0 0.55144 1 42398 42398 4.3292 0.38484 1 122120000 + 20943 18514 14215 14488 24794 24794 -0.09325138853364479 HQPRKMLF 8 Unmodified _HQPRKMLF_ 0 0 0 REV__ENST00000409245.5_1_2:47143338-47143563:+|nuORF REV__ENST00000409245.5_1_2:47143338-47143563:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.8639831542969 3 352.863895 1055.56985 NaN NaN NaN NaN NaN NaN NaN 15.785 1 13.258 12.758 13.758 -2.5273 0 0 0 0.95973 1 8130 8130 6.2058 1.8765 1 + 20944 26683 14216 14489 24795 24795 0.044292327648236096 HQQCDEWF 8 Unmodified _HQQCDEWF_ 0 0 0 REV__nc|ENSG00000143554|Q5K4L6-2|SLC27A3 REV__nc|ENSG00000143554|Q5K4L6-2|SLC27A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2172241210938 2 546.713816 1091.41308 0.30785 0.00016831 -0.18388 -0.00010053 0.12397 6.7779E-05 546.7140978121959 91.645 0.63587 91.164 90.794 91.43 -0.48092 191 38 8 0 0 0 0.80624 1 50082 50082 2.8892 0.58649 1 16680000 + 20945 20654 14217 14490 24796 24796 -0.1289709691616281 HQQILLYI 8 Unmodified _HQQILLYI_ 0 0 0 nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3 nc|ENSG00000186529|Q08477-2|CYP4F3 nc|ENSG00000186529|Q08477-2|CYP4F3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2996826171875 2 514.300384 1026.58622 0.61597 0.0003168 -0.72707 -0.00037393 -0.1111 -5.7138E-05 514.2995709543411 84.291 1.1587 78.115 77.345 78.503 -6.1757 142 63 3 0 0 0 0.50586 1 55517 55517 34.187 0 1 49445000 20946 16462 14218 14491 24797 24797 0.07398637202550162 HQQLSKMDVHG 11 Unmodified _HQQLSKMDVHG_ 0 0 0 ENSG00000101624|ENST00000262127|CEP76;nc|ENSG00000101624|Q8TAP6-2|CEP76 ENSG00000101624|ENST00000262127|CEP76 ENSG00000101624|ENST00000262127|CEP76 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2141418457031 3 427.211911 1278.6139 0.13651 5.8318E-05 4.1662 0.0017799 4.3027 0.0018382 427.21357459712954 18.446 0.16336 18.452 18.368 18.531 0.0060482 10 7 2 0 0 0 0.73389 1 9369 9369 0.36667 0.22678 1 524210 20947 1982 14219 14492 24798 24798 -0.014258275995189251 HQRLWGLFPG 10 Unmodified _HQRLWGLFPG_ 0 0 0 REV__ENSG00000178732|ENST00000692618|GP5 REV__ENSG00000178732|ENST00000692618|GP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.82763671875 2 605.827632 1209.64071 0.2135 0.00012934 -0.80368 -0.00048689 -0.59018 -0.00035755 605.8270270739359 75.534 0.40765 75.582 75.389 75.797 0.047951 42 18 3 0 0 0 0.65502 1 41726 41726 7.9102 0 1 4967900 + 20948 23060 14220 14493 24799 24799 0.04427649073977591 HQSGGVLKEF 10 Unmodified _HQSGGVLKEF_ 0 0 0 ENST00000342584.3_1_5:472025-473050:-|nuORF ENST00000342584.3_1_5:472025-473050:-|nuORF ENST00000342584.3_1_5:472025-473050:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.288330078125 2 551.288005 1100.56146 NaN NaN NaN NaN NaN NaN NaN 45.156 1 44.831 44.331 45.331 -0.32425 0 0 0 0.28434 1 24108 24108 37.974 16.227 1 20949 11987 14221 14494 24800 24800 0.015199573291738488 HQSKLIRTVV 10 Unmodified _HQSKLIRTVV_ 0 0 0 REV__ENSG00000178750|ENST00000315099|STX19 REV__ENSG00000178750|ENST00000315099|STX19 MSMS AL20221201_MKP_PDAC_01 4 394.243896484375 3 394.24354 1179.70879 NaN NaN NaN NaN NaN NaN NaN 109.64 1 103.46 102.96 103.96 -6.1757 0 0 0 1.0009 1 73210 73210 0.56317 0 1 + 20950 23061 14222 14495 24801 24801 0.12612473933995716 HQVANFNIPAY 11 Unmodified _HQVANFNIPAY_ 0 0 0 nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3189086914062 2 637.319837 1272.62512 0.16423 0.00010467 -1.6144 -0.0010289 -1.4501 -0.0009242 637.31869675011 59.173 0.19398 59.173 59.068 59.262 0 11 7 2 0 0 0 0.67922 1 32988 32988 6.2058 0.47393 1 1006300 20951 6982 14223 14496 24802 24802 -0.00028682233710242144 HQWHRRRTL 9 Unmodified _HQWHRRRTL_ 0 0 0 ENST00000589111.5_1_19:39359746-39361880:-|nuORF;nc|ENSG00000187994|Q6ZS11-2|RINL;ENSG00000187994|ENST00000591812|RINL ENST00000589111.5_1_19:39359746-39361880:-|nuORF ENST00000589111.5_1_19:39359746-39361880:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.8884887695312 3 430.574395 1288.70135 0.2701 0.0001163 -1.0578 -0.00045548 -0.78775 -0.00033918 430.5745219071576 14.813 0.10334 12.285 12.263 12.366 -2.5273 22 18 2 0 0 0 0.21806 1 7556 7556 2.7352 0.10396 1 1213500 20952 9615 14224 14497 24803 24803 0.06855179176932324 HQWRWWWRQ 9 Unmodified _HQWRWWWRQ_ 0 0 0 REV__ENST00000305123.5_1_2:227663257-227663680:-|nuORF REV__ENST00000305123.5_1_2:227663257-227663680:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2433166503906 3 490.242645 1467.70611 NaN NaN NaN NaN NaN NaN NaN 0.29337 1 0.29337 -0.20663 0.79337 0 0 0 0 0.86004 1 147 147 0.26902 0.17418 1 + 20953 25364 14225 14498 24804 24804 -0.009039366803335724 HRDLCLENL 9 Unmodified _HRDLCLENL_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.3059692382812 2 556.77949 1111.54443 1.1732 0.00065323 1.7032 0.00094828 2.8764 0.0016015 556.7802452928985 87.148 0.10601 80.973 80.876 80.982 -6.1757 7 5 2 0 0 0 0.18118 1 57397 57397 19.257 4.4187 1 5550400 20954 10906 14226 14499 24805 24805 -0.006882865482793932 HRDYETATL 9 Unmodified _HRDYETATL_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2671508789062 2 553.26727 1104.51999 -0.12126 -6.709E-05 -0.07641 -4.2275E-05 -0.19767 -0.00010936 553.2672007201621 18.889 0.29347 18.889 18.739 19.032 0 80 24 4 0 0 0 0.11005 1 9440 9440 34.402 3.7652 1 22887000 20955 4211 14227 14500 24806 24806 -0.028092234301539065 HRDYETATL 9 Unmodified _HRDYETATL_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2681274414062 2 553.26727 1104.51999 1.1798 0.00065274 -0.23861 -0.00013201 0.94119 0.00052073 553.2670898055369 20.67 0.48174 17.977 17.723 18.205 -2.693 103 29 4 0 0 0 0.29507 1 11142 11142 13.042 0 1 58545000 20956 4211 14227 14500 24807 24807 -0.028092234301539065 HREKRQQRK 9 Unmodified _HREKRQQRK_ 0 0 0 ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5811157226562 3 422.581438 1264.72248 0.19202 8.1145E-05 -0.80373 -0.00033964 -0.6117 -0.0002585 422.58101677621977 68.4 0.34067 68.4 68.244 68.585 0 22 15 3 0 0 0 0.60664 1 38117 38117 0.96228 0.26461 1 309640 20957 5871 14228 14501 24808 24808 0.1007114448577795 HREKRQQRK 9 Unmodified _HREKRQQRK_ 0 0 0 ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 422.581438 1264.72248 0.19202 8.1145E-05 -0.80373 -0.00033964 -0.6117 -0.0002585 422.58101677621977 68.4 0.34067 68.4 68.244 68.585 0 0.07432 0.0010673 NaN 0.96228 22 15 3 NaN NaN NaN NaN 0 NaN NaN 0 309640 20958 5871 14228 14501 0.1007114448577795 HREKRQQRK 9 Unmodified _HREKRQQRK_ 0 0 0 ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 422.581438 1264.72248 0.28197 0.00011916 -2.2561 -0.00095338 -1.9741 -0.00083422 422.58034239098885 68.849 0.21895 68.368 68.202 68.421 -0.48071 0.041946 -0.00077388 NaN 0.96228 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 808400 20959 5871 14228 14501 0.1007114448577795 HRELHYKL 8 Unmodified _HRELHYKL_ 0 0 0 REV__ENSG00000198597|ENST00000355537|ZNF536 REV__ENSG00000198597|ENST00000355537|ZNF536 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2067565917969 3 365.873447 1094.59851 -0.60153 -0.00022008 -0.90226 -0.00033011 -1.5038 -0.0005502 365.87324346214945 15.227 0.057201 15.227 15.197 15.254 0 19 16 2 0 0 0 0.80676 1 7314 7314 1.6526 0 1 333290 + 20960 24029 14229 14502 24809 24809 0.05499673665599403 HRETQLDIKVK 11 Unmodified _HRETQLDIKVK_ 0 0 0 ENST00000406520.7_1_22:19939075-19948724:+|nuORF ENST00000406520.7_1_22:19939075-19948724:+|nuORF ENST00000406520.7_1_22:19939075-19948724:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 455.9309692382812 3 456.264892 1365.77285 0.57101 0.00026053 -0.53753 -0.00024526 0.033481 1.5276E-05 456.2647422811666 98.677 0.069199 92.502 92.465 92.535 -6.1757 6 4 2 0 0 0 0.28996 1 65514 65514 15.538 2.6825 1 16322000 20961 12932 14230 14503 24810 24810 0.10459209300256589 HRFLFPRLR 9 Unmodified _HRFLFPRLR_ 0 0 0 ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENST00000426861.5_1_17:56598198-56599363:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.5857849121094 3 414.58412 1240.73053 NaN NaN NaN NaN NaN NaN NaN 105.06 1 98.885 98.385 99.385 -6.1757 0 0 0 0.84737 1 70354 70354 0.96228 0 1 20962 13184 14231 14504 24811 24811 0.11979323473201475 HRFLGLLY 8 Unmodified _HRFLGLLY_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;nc|ENSG00000183054|Q99666-2|RGPD5;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7950134277344 2 509.795269 1017.57599 0.33549 0.00017103 -0.80511 -0.00041044 -0.46962 -0.00023941 509.7947194110469 84.808 0.34128 84.808 84.589 84.93 0 37 16 3 0 0 0 0.80232 2 46933 46930;46933 5.2307 3.1709 1 1009900 20963 6246;6244;9359;9876 14232 14505 24812;24813 24813 0.06790074267985347 HRFLWVCLHRN 11 Unmodified _HRFLWVCLHRN_ 0 0 0 REV__ENSG00000120662|ENST00000379480|MTRF1 REV__ENSG00000120662|ENST00000379480|MTRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 740.8876342773438 2 740.890772 1479.76699 NaN NaN NaN NaN NaN NaN NaN 18.711 1 18.717 18.217 19.217 0.0060463 0 0 0 0.94307 1 9492 9492 0.30703 0 1 + 20964 19253 14233 14506 24814 24814 0.04629832307614379 HRFLWVCLHRN 11 Unmodified _HRFLWVCLHRN_ 0 0 0 REV__ENSG00000120662|ENST00000379480|MTRF1 REV__ENSG00000120662|ENST00000379480|MTRF1 MSMS AL20221201_MKP_PDAC_01 4 740.8898315429688 2 740.890772 1479.76699 NaN NaN NaN NaN NaN NaN NaN 22.917 1 20.138 19.638 20.638 -2.7784 0 0 0 0.93224 1 12365 12365 5.7319 2.4505 1 + 20965 19253 14233 14506 24815 24815 0.04629832307614379 HRGAGCVR 8 Unmodified _HRGAGCVR_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000485673.5_1_20:57464182-57464599:+|nuORF ENST00000477931.5_1_20:57464155-57485881:+|nuORF ENST00000477931.5_1_20:57464155-57485881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.4354248046875 1 855.436615 854.429338 -0.39693 -0.00033955 -0.33047 -0.0002827 -0.72741 -0.00062225 855.4363968490101 29.152 0.21879 29.152 29.043 29.262 0 17 10 2 0 0 0 0.74163 1 15069 15069 13.508 2.3934 1 1712300 20966 14003 14234 14507 24816 24816 -0.0036992616874158557 HRGAGCVR 8 Unmodified _HRGAGCVR_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000485673.5_1_20:57464182-57464599:+|nuORF ENST00000477931.5_1_20:57464155-57485881:+|nuORF ENST00000477931.5_1_20:57464155-57485881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.4373168945312 1 855.436615 854.429338 0.31907 0.00027295 -0.095367 -8.158E-05 0.2237 0.00019136 855.4358796018399 50.748 0.23359 50.748 50.664 50.897 0 22 14 2 0 0 0 0.6895 1 27982 27982 18.135 1.0484 1 6493300 20967 14003 14234 14507 24817 24817 -0.0036992616874158557 HRGALVQRD 9 Unmodified _HRGALVQRD_ 0 0 0 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1967163085938 3 351.196701 1050.56827 -0.37387 -0.0001313 1.0577 0.00037147 0.68386 0.00024017 351.1963884580657 24.647 0.20892 24.647 24.572 24.781 0 15 12 2 0 0 0 0.60825 1 12599 12599 0.86438 0.3012 1 941680 + 20968 29859 14235 14508 24818 24818 0.045013150004251656 HRGALVQRD 9 Unmodified _HRGALVQRD_ 0 0 0 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 REV__nc|ENSG00000187260|Q86TI4-4|WDR86 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1964721679688 3 351.196701 1050.56827 NaN NaN NaN NaN NaN NaN NaN 28.516 1 28.454 27.954 28.954 -0.062159 0 0 0 0.85525 1 14723 14723 0.86438 0.46366 1 + 20969 29859 14235 14508 24819 24819 0.045013150004251656 HRGATNHRC 9 Unmodified _HRGATNHRC_ 0 0 0 REV__ENSG00000065320|ENST00000173229|NTN1;REV__ENSG00000162068|ENST00000293973|NTN3 REV__ENSG00000065320|ENST00000173229|NTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1700439453125 3 351.170269 1050.48898 NaN NaN NaN NaN NaN NaN NaN 21.335 1 21.335 20.835 21.835 0 0 0 0 0.85798 1 10787 10787 0.23584 0 1 + 20970 17373;21623 14236 14509 24820 24820 -0.034246552253762275 HRGHSHHRHVH 11 Unmodified _HRGHSHHRHVH_ 0 0 0 ENST00000497209.5_1_20:61296327-61299537:+|nuORF ENST00000497209.5_1_20:61296327-61299537:+|nuORF ENST00000497209.5_1_20:61296327-61299537:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5716857910156 3 466.236664 1395.68816 0.43049 0.00020071 0.90111 0.00042013 1.3316 0.00062084 466.2369515730122 84.517 0.498 84.017 83.729 84.227 -0.49961 60 22 3 0 0 0 0.30542 1 46163 46163 2.8433 0.21205 1 3228800 20971 14394 14237 14510 24821 24821 0.006147411175561501 HRGSQHLAM 9 Unmodified _HRGSQHLAM_ 0 0 0 REV__ENST00000427063.6_1_10:29710910-29711027:+|nuORF REV__ENST00000427063.6_1_10:29710910-29711027:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.76025390625 2 518.758892 1035.50323 0.67864 0.00035205 -1.1654 -0.00060454 -0.48671 -0.00025249 518.7586906762598 44.475 0.30544 39.623 39.425 39.73 -4.852 37 21 2 0 0 0 0.43463 1 27105 27105 10.824 2.9138 1 11105000 + 20972 26914 14238 14511 24822 24822 -0.013100027970722294 HRGSSFAL 8 Unmodified _HRGSSFAL_ 0 0 0 REV__ENSG00000178222|ENST00000433731|RNF212 REV__ENSG00000178222|ENST00000433731|RNF212 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.731201171875 2 437.730126 873.4457 -0.043409 -1.9001E-05 0.96137 0.00042082 0.91796 0.00040182 437.7307487621932 25.633 0.28862 22.707 22.524 22.813 -2.9265 25 15 2 0 0 0 0.57045 1 14018 14018 28.487 1.6032 1 4391700 + 20973 23029 14239 14512 24823 24823 0.003914782690003449 HRHGKPFVF 9 Unmodified _HRHGKPFVF_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2254943847656 3 375.54192 1123.60393 0.15576 5.8494E-05 0.29505 0.0001108 0.45081 0.0001693 375.54232663658325 23.744 0.23277 23.765 23.672 23.905 0.021183 12 9 2 0 0 0 0.21473 1 12231 12231 8.1555 3.8263 1 1419200 20974 4555 14240 14513 24824 24824 0.047073972480802695 HRHGKPFVF 9 Unmodified _HRHGKPFVF_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5424194335938 3 375.54192 1123.60393 1.6471 0.00061857 -0.037516 -1.4089E-05 1.6096 0.00060448 375.54197768863924 90.935 0.20965 84.759 84.644 84.854 -6.1757 19 12 2 0 0 0 0.16226 1 60095 60095 19.362 13.579 1 13102000 20975 4555 14240 14513 24825 24825 0.047073972480802695 HRHIERTL 8 Unmodified _HRHIERTL_ 0 0 0 nc|ENSG00000102385|Q13474-2|DRP2;ENSG00000102385|ENST00000395209|DRP2 nc|ENSG00000102385|Q13474-2|DRP2 nc|ENSG00000102385|Q13474-2|DRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3056030273438 2 531.301781 1060.58901 0.65945 0.00035037 3.3812 0.0017964 4.0406 0.0021468 531.303766692279 74.814 0.27344 74.338 74.133 74.406 -0.47588 18 10 2 0 0 0 0.58039 1 40918 40918 26.884 0 1 954840 20976 2041 14241 14514 24826 24826 0.06113905380084361 HRHMACDYR 9 Unmodified _HRHMACDYR_ 0 0 0 nc|ENSG00000157637|Q9HBR0-2|SLC38A10;ENST00000573058.1_1_17:79225017-79225422:-|nuORF nc|ENSG00000157637|Q9HBR0-2|SLC38A10 nc|ENSG00000157637|Q9HBR0-2|SLC38A10 MSMS AL20221201_MKP_PDAC_01 4 396.8438110351562 3 396.843165 1187.50766 NaN NaN NaN NaN NaN NaN NaN 13.186 1 10.704 10.204 11.204 -2.482 0 0 0 0.85798 1 6680 6680 0.23584 0 1 20977 16300 14242 14515 24827 24827 -0.07858861645854631 HRHRLHKF 8 Unmodified _HRHRLHKF_ 0 0 0 REV__ENST00000573058.1_1_17:79225017-79225422:-|nuORF REV__ENST00000573058.1_1_17:79225017-79225422:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8265380859375 2 565.825758 1129.63696 0.89407 0.00050589 1.3597 0.00076937 2.2538 0.0012753 565.8266407806558 74.878 0.21481 74.401 74.302 74.517 -0.47633 15 8 2 0 0 0 0.80143 1 40972 40972 5.7604 0.52976 1 740080 + 20978 28992 14243 14516 24828 24828 0.0773302409079406 HRHRLHKF 8 Unmodified _HRHRLHKF_ 0 0 0 REV__ENST00000573058.1_1_17:79225017-79225422:-|nuORF REV__ENST00000573058.1_1_17:79225017-79225422:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2559814453125 2 565.825758 1129.63696 0.89407 0.00050589 1.3597 0.00076937 2.2538 0.0012753 565.8266407806558 74.878 0.21481 74.401 74.302 74.517 -0.47633 15 8 2 0 0 0 8.7369 1 41021 41021 5.7604 1.0044 1 740080 + 20979 28992 14243 14516 24829 24829 0.0773302409079406 HRIIMQHFH 9 Unmodified _HRIIMQHFH_ 0 0 0 REV__ENSG00000018869|ENST00000586929|ZNF582 REV__ENSG00000018869|ENST00000586929|ZNF582 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.88134765625 3 406.881948 1217.62402 NaN NaN NaN NaN NaN NaN NaN 18.313 1 18.335 17.835 18.835 0.022501 0 0 0 0.85798 1 9173 9173 0.23584 0.095952 1 + 20980 17098 14244 14517 24830 24830 0.023908249163696382 HRIQVRSRR 9 Unmodified _HRIQVRSRR_ 0 0 0 REV__ENST00000366930.8_1_1:218519598-218519706:+|nuORF REV__ENST00000366930.8_1_1:218519598-218519706:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.369384765625 2 604.365779 1206.717 4.0478 0.0024464 -0.037452 -2.2634E-05 4.0104 0.0024237 604.3655937932009 98.789 0.66156 98.761 98.584 99.246 -0.028282 65 23 5 0 0 0 0.61381 1 54951 54951 0.52476 0.066424 1 125120000 + 20981 25968 14245 14518 24831 24831 0.12191465693967984 HRIYYITL 8 Unmodified _HRIYYITL_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2 ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8067626953125 2 539.805834 1077.59712 0.53468 0.00028862 -1.1932 -0.00064408 -0.65849 -0.00035546 539.805877913633 52.828 0.29738 52.765 52.603 52.901 -0.063423 38 14 4 0 0 0 0.40035 1 28607 28607 44.407 4.4497 1 5150300 20982 6106 14246 14519 24832 24832 0.06142039576843672 HRKNLSMIF 9 Unmodified _HRKNLSMIF_ 0 0 0 REV__ENSG00000135953|ENST00000258436|MFSD9 REV__ENSG00000135953|ENST00000258436|MFSD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.284912109375 2 573.316043 1144.61753 -0.13411 -7.6886E-05 -2.7752 -0.0015911 -2.9093 -0.001668 573.8159246486109 29.025 0.19872 29.025 28.903 29.102 0 21 9 4 0 0 0 0.19891 1 15016 15016 11.64 5.4345 1 840450 + 20983 20120 14247 14520 24833 24833 0.051008869650104316 HRKRFSFYLL 10 Unmodified _HRKRFSFYLL_ 0 0 0 ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-2|HTR3E ENSG00000186038|ENST00000415389|HTR3E ENSG00000186038|ENST00000415389|HTR3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2630615234375 3 456.262935 1365.76697 0.31607 0.00014421 -1.115 -0.00050873 -0.79893 -0.00036452 456.2624394142964 91.719 0.26871 91.238 91.178 91.447 -0.48092 23 17 2 0 0 0 0.713 1 50154 50154 1.4551 0.24029 1 644700 20984 9444 14248 14521 24834 24834 0.09872155579296304 HRLETLTM 8 Unmodified _HRLETLTM_ 0 0 0 REV__ENST00000506277.1_1_5:36885931-36886276:+|nuORF REV__ENST00000506277.1_1_5:36885931-36886276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7666015625 2 500.765852 999.51715 -0.50293 -0.00025185 -0.67586 -0.00033845 -1.1788 -0.0005903 500.76595914911474 33.687 0.18982 33.527 33.459 33.649 -0.15918 12 7 2 0 0 0 0.76266 1 17593 17593 11.64 0 1 1214600 + 20985 28087 14249 14522 24835 24835 0.01737229911339 HRLPLETAY 9 Unmodified _HRLPLETAY_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5373840332031 3 367.201341 1098.58219 1.519 0.00055779 1.0391 0.00038157 2.5581 0.00093935 367.5363705337363 31.037 0.3633 27.54 27.343 27.706 -3.497 25 16 2 0 0 0 0.39863 1 17630 17630 8.1555 0 1 53429000 20986 10835 14250 14523 24836 24836 0.03684547708849095 HRLSLRISKK 10 Unmodified _HRLSLRISKK_ 0 0 0 REV__ENST00000487874.1_1_1:35496252-35497238:-|nuORF REV__ENST00000487874.1_1_1:35496252-35497238:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2662353515625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 96.248 1 95.943 95.443 96.443 -0.30472 0 0 0 1.0019 1 52564 52564 0.15932 0 1 + 20987 25843 14251 14524 24837 24837 0.16895557953512252 HRMLKAMLLF 10 Unmodified _HRMLKAMLLF_ 0 0 0 ENST00000396821.7_1_22:38879500-38879563:-|nuORF ENST00000396821.7_1_22:38879500-38879563:-|nuORF ENST00000396821.7_1_22:38879500-38879563:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5754089355469 3 420.575356 1258.70424 -0.093619 -3.9374E-05 -0.55413 -0.00023305 -0.64775 -0.00027243 420.57498399055 37.774 0.14832 37.791 37.691 37.839 0.01704 10 6 2 0 0 0 0.68719 1 20060 20060 2.086 0.17963 1 1475000 20988 12805 14252 14525 24838 24838 0.0852355019519564 HRMRGDQVLW 10 Unmodified _HRMRGDQVLW_ 0 0 0 ENST00000477288.5_1_6:30882610-30884901:+|nuORF;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;nc|ENSG00000137411|Q5ST30-3|VARS2 ENST00000477288.5_1_6:30882610-30884901:+|nuORF ENST00000477288.5_1_6:30882610-30884901:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8887329101562 3 433.224263 1296.65096 0.040373 1.7491E-05 0.93548 0.00040527 0.97585 0.00042276 433.2247601091999 31.837 0.2427 31.708 31.575 31.818 -0.12915 20 9 3 0 0 0 0.23946 1 16540 16540 3.5871 0.5148 1 8980300 20989 4928 14253 14526 24839 24839 0.01449888736920002 HRNRVAYLSLY 11 Unmodified _HRNRVAYLSLY_ 0 0 0 nc|ENSG00000173947|Q8TCI5-3|CIMAP3;ENSG00000173947|ENST00000369738|PIFO nc|ENSG00000173947|Q8TCI5-3|CIMAP3 nc|ENSG00000173947|Q8TCI5-3|CIMAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.380126953125 2 696.38076 1390.74697 0.85486 0.00059531 -0.64799 -0.00045125 0.20687 0.00014406 696.3798354079661 80.859 0.37895 80.917 80.733 81.111 0.057587 40 14 4 0 0 0 0.68427 1 44805 44805 5.7319 2.7366 1 6435900 20990 8380 14254 14527 24840 24840 0.06722359848663473 HRPLNKFV 8 Unmodified _HRPLNKFV_ 0 0 0 REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF REV__ENST00000342287.9_2_9:128728684-128729074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7969360351562 2 505.798343 1009.58213 0.18271 9.2414E-05 -0.43244 -0.00021873 -0.24973 -0.00012632 505.79776252558685 17.418 0.36801 17.423 17.348 17.716 0.0050564 28 28 2 0 0 0 0.80992 1 8796 8796 0.69038 0.088878 1 705670 + 20991 25718 14255 14528 24841 24841 0.0777259249952067 HRPRWKTL 8 Unmodified _HRPRWKTL_ 0 0 0 REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3226318359375 2 547.322517 1092.63048 NaN NaN NaN NaN NaN NaN NaN 86.73 1 86.73 86.23 87.23 0 0 0 0 0.97444 1 48034 48034 2.3027 0.82083 1 + 20992 29125 14256 14529 24842 24842 0.08787086139409439 HRPSPYPSHS 10 Unmodified _HRPSPYPSHS_ 0 0 0 REV__nc|ENSG00000107249|Q8NEA6|GLIS3 REV__nc|ENSG00000107249|Q8NEA6|GLIS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8564758300781 3 388.856345 1163.5472 -0.54182 -0.00021069 0.50325 0.00019569 -0.038566 -1.4997E-05 388.8566195139231 18.1 0.10976 18.114 18.049 18.159 0.013866 48 18 3 0 0 0 0.69377 1 9028 9028 1.7423 0 1 4235600 + 20993 18556 14257 14530 24843 24843 -0.028026950991034028 HRQAVVLY 8 Unmodified _HRQAVVLY_ 0 0 0 ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF ENST00000467370.5_1_3:125824416-125834086:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2823486328125 2 493.282526 984.550499 NaN NaN NaN NaN NaN NaN NaN 74.416 1 74.416 73.916 74.916 0 0 0 0 0.97444 1 41409 41409 0.79363 0 1 20994 13778 14258 14531 24844 24844 0.05760599745553918 HRQHLLSEM 9 Unmodified _HRQHLLSEM_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;nc|ENSG00000131018|Q8NF91-2|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.4020385742188 2 575.792932 1149.57131 0.58451 0.00033656 -0.090746 -5.2251E-05 0.49377 0.00028431 575.7925365637753 88.676 0.43742 88.171 87.934 88.371 -0.50423 45 18 3 0 0 0 0.61381 1 48407 48407 0.52476 0 1 1014800 20995 4286 14259 14532 24845 24845 0.002508220629351854 HRRRRHREYEH 11 Unmodified _HRRRRHREYEH_ 0 0 0 ENSG00000166546|ENST00000536005|BEAN1 ENSG00000166546|ENST00000536005|BEAN1 ENSG00000166546|ENST00000536005|BEAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 816.4298706054688 2 816.427962 1630.84137 1.2049 0.00098372 -1.4636 -0.0011949 -0.25867 -0.00021118 816.42710547651 101.33 0.16766 95.152 95.064 95.231 -6.1757 23 9 3 0 0 0 0.7326 1 67998 67998 1.1933 0.84271 1 16027000 20996 7507 14260 14533 24846 24846 0.0511831144340249 HRRRRRRRR 9 Unmodified _HRRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF;REV__ENST00000366641.3_1_1:231557623-231557677:-|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 702.9440307617188 2 702.946459 1403.87836 NaN NaN NaN NaN NaN NaN NaN 29.361 1 29.391 28.891 29.891 0.030106 0 0 0 0.85798 1 15317 15317 0.52476 0.12405 1 + 20997 25664;25961 14261 14534 24847 24847 0.19258072570414697 HRRRRRRRRRR 11 Unmodified _HRRRRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 859.0454711914062 2 859.04757 1716.08059 NaN NaN NaN NaN NaN NaN NaN 76.252 1 76.3 75.8 76.8 0.047943 0 0 0 0.9435 1 42073 42073 0 0 1 + 20998 25664 14262 14535 24848 24848 0.2511897597580628 HRRRRRRRRRR 11 Unmodified _HRRRRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 859.0460815429688 2 859.04757 1716.08059 NaN NaN NaN NaN NaN NaN NaN 97.047 1 90.871 90.371 91.371 -6.1757 0 0 0 0.9435 1 64315 64315 0 0 1 + 20999 25664 14262 14535 24849 24849 0.2511897597580628 HRRWHQHPC 9 Unmodified _HRRWHQHPC_ 0 0 0 REV__SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant REV__SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5390930175781 3 419.537064 1255.58936 NaN NaN NaN NaN NaN NaN NaN 19.746 1 19.746 19.246 20.246 0 0 0 0 0.85737 1 9898 9898 0.26902 0 1 + 21000 30098 14263 14536 24850 24850 -0.02820998171705469 HRRYNLMY 8 Unmodified _HRRYNLMY_ 0 0 0 REV__ENST00000367294.3_1_6:151789937-151790003:+|nuORF REV__ENST00000367294.3_1_6:151789937-151790003:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5249938964844 3 384.862554 1151.56583 -0.50666 -0.00019499 3.7696 0.0014508 3.263 0.0012558 385.19752370038293 19.368 0.17418 19.368 19.313 19.487 0 13 12 2 0 0 0 8.7369 1 9722 9722 0.45834 0.18932 1 391400 + 21001 25979 14264 14537 24851 24851 -0.0038885672890955902 HRSCVDCLRQY 11 Unmodified _HRSCVDCLRQY_ 0 0 0 nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000034677|Q9NV58-2|RNF19A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.5485534667969 3 460.548417 1378.62342 0.52153 0.00024019 -0.44219 -0.00020365 0.079346 3.6543E-05 460.5482457619456 37.752 0.20174 37.752 37.625 37.826 0 14 9 2 0 0 0 0.73114 1 20141 20141 1.3296 0.82369 1 2024800 21002 607 14265 14538 24852 24852 -0.050743825856443436 HRSCVDCLRQY 11 Unmodified _HRSCVDCLRQY_ 0 0 0 nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000034677|Q9NV58-2|RNF19A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 460.548417 1378.62342 -0.10689 -4.9229E-05 0.83231 0.00038332 0.72542 0.00033409 460.54902887844054 38.215 0.12635 37.944 37.842 37.969 -0.27133 0.096071 0.0012765 NaN 1.3296 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 489930 21003 607 14265 14538 -0.050743825856443436 HRSGLRPWYRF 11 Unmodified _HRSGLRPWYRF_ 0 0 0 REV__ENSG00000070778|ENST00000556564|PTPN21 REV__ENSG00000070778|ENST00000556564|PTPN21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2680053710938 3 492.265338 1473.77419 1.0122 0.00049829 2.1391 0.001053 3.1513 0.0015513 492.5999339863648 48.361 0.29416 43.127 42.988 43.282 -5.2339 44 17 3 0 0 0 0.71728 1 30190 30190 2.6312 0.19645 1 39230000 + 21004 17482 14266 14539 24853 24853 0.05624888179681875 HRSHRRRQWRF 11 Unmodified _HRSHRRRQWRF_ 0 0 0 ENST00000552421.5_1_14:75230214-75230343:+|nuORF ENST00000552421.5_1_14:75230214-75230343:+|nuORF ENST00000552421.5_1_14:75230214-75230343:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.443359375 2 811.443415 1620.87228 NaN NaN NaN NaN NaN NaN NaN 82.202 1 82.264 81.764 82.764 0.062004 0 0 0 0.9435 1 45469 45469 0 0 1 21005 15178 14267 14540 24854 24854 0.0866750954824056 HRSLSSSLQAP 11 Unmodified _HRSLSSSLQAP_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8788452148438 3 394.879038 1181.61528 0.1082 4.2726E-05 -0.095588 -3.7746E-05 0.012611 4.9799E-06 395.2130897366265 26.907 0.11586 26.935 26.845 26.961 0.028664 7 4 2 0 0 0 0.16638 1 13958 13958 34.79 17.219 1 10459000 + 21006 176 14268 14541 24855 24855 0.03174129760895994 HRSLSSSLQAP 11 Unmodified _HRSLSSSLQAP_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8157958984375 2 591.814919 1181.61528 0.14025 8.3005E-05 -0.43756 -0.00025895 -0.2973 -0.00017595 591.814561578301 26.88 0.15674 26.909 26.845 27.002 0.028662 8 6 2 0 0 0 0.40509 1 13966 13966 26.021 7.8744 1 3930700 + 21007 176 14268 14541 24856 24856 0.03174129760895994 HRSLSSSLQAP 11 Unmodified _HRSLSSSLQAP_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8788452148438 3 394.879038 1181.61528 1.3157 0.00051953 -0.58851 -0.00023239 0.72716 0.00028714 394.87862597327967 30.705 0.27358 27.208 27.047 27.321 -3.497 18 12 2 0 0 0 0.23243 1 17306 17306 30.354 5.4728 1 31460000 + 21008 176 14268 14541 24857 24857 0.03174129760895994 HRSLSSSLQAP 11 Unmodified _HRSLSSSLQAP_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.815673828125 2 591.814919 1181.61528 0.94367 0.00055848 -0.79548 -0.00047077 0.14819 8.7704E-05 591.8147662169902 30.695 0.25054 27.198 27.07 27.321 -3.497 18 11 2 0 0 0 0.016248 1 17316 17316 73.196 40.411 1 31792000 + 21009 176 14268 14541 24858 24858 0.03174129760895994 HRSNMSGSYC 10 Unmodified _HRSNMSGSYC_ 0 0 0 REV__ENSG00000166016|ENST00000435224|ABTB2 REV__ENSG00000166016|ENST00000435224|ABTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1547546386719 3 381.155297 1140.44406 -0.025395 -9.6794E-06 1.2093 0.00046092 1.1839 0.00045124 381.15514210585343 64.962 1.0154 64.962 64.809 65.824 0 66 44 3 0 0 0 0.71276 1 36188 36188 1.7423 1.334 1 2550600 + 21010 22077 14269 14542 24859 24859 -0.12054266873565211 HRVDTSQEMS 10 Unmodified _HRVDTSQEMS_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2677001953125 2 595.266944 1188.51934 0.94314 0.00056142 -0.067834 -4.0379E-05 0.87531 0.00052104 595.2669921541375 50.593 0.36631 50.18 49.992 50.358 -0.41351 45 17 3 0 0 0 0.38092 1 27298 27298 22.736 1.1993 1 24724000 21011 9504 14270 14543 24860 24860 -0.06738386141478259 HRVDTSQEMS 10 Unmodified _HRVDTSQEMS_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.267822265625 2 595.266944 1188.51934 1.2694 0.0007556 0.091803 5.4647E-05 1.3612 0.00081025 595.266814529462 50.234 0.28543 50.185 50.066 50.352 -0.048828 31 13 3 0 0 0 0.32072 1 27151 27151 26.268 0 1 4684200 21012 9504 14270 14543 24861 24861 -0.06738386141478259 HRVFRLNQEIF 11 Unmodified _HRVFRLNQEIF_ 0 0 0 ENST00000402010.6_1_11:63676765-63677272:+|nuORF ENST00000402010.6_1_11:63676765-63677272:+|nuORF ENST00000402010.6_1_11:63676765-63677272:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 729.9041137695312 2 729.90186 1457.78917 1.0363 0.00075643 1.8387 0.0013421 2.8751 0.0020985 729.9027663241941 100.31 0.14225 94.134 94.044 94.187 -6.1757 18 8 3 0 0 0 0.48615 1 67045 67045 17.113 0.96379 1 57848000 21013 12888 14271 14544 24862 24862 0.07858335256992177 HRVPAHKRY 9 Unmodified _HRVPAHKRY_ 0 0 0 nc|ENSG00000136297|Q8IY49-3|MMD2;ENSG00000136297|ENST00000401401|MMD2;nc|ENSG00000136297|Q8IY49|MMD2 nc|ENSG00000136297|Q8IY49-3|MMD2 nc|ENSG00000136297|Q8IY49-3|MMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3328857421875 2 582.330873 1162.64719 0.7906 0.00046039 0.90488 0.00052694 1.6955 0.00098733 582.3313400001861 73.768 0.66901 73.812 73.589 74.258 0.043983 111 30 6 0 0 0 0.51218 1 40814 40814 6.7232 6.7232 1 606590000 21014 4814 14272 14545 24863 24863 0.07237587025360881 HRWRFTCYYYY 11 Unmodified _HRWRFTCYYYY_ 0 0 0 ENST00000444199.1_1_19:55208384-55209490:+|nuORF;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3 ENST00000444199.1_1_19:55208384-55209490:+|nuORF ENST00000444199.1_1_19:55208384-55209490:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 829.373291015625 2 829.372078 1656.7296 1.1316 0.0009385 -0.76182 -0.00063183 0.36975 0.00030666 829.3712753043271 89.91 0.71206 83.734 83.362 84.074 -6.1757 101 39 3 0 0 0 0.7326 3 59452 59186;59315;59452 1.1933 0.92432 1 24235000 21015 10303 14273 14546 24864;24865;24866 24866 -0.07249303748653801 HRWVEGLHE 9 Unmodified _HRWVEGLHE_ 0 0 0 REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1966857910156 3 388.19659 1161.56794 NaN NaN NaN NaN NaN NaN NaN 16.79 1 16.791 16.291 17.291 0.0010548 0 0 0 0.84737 1 8303 8303 0.96228 0 1 + 21016 27337 14274 14547 24867 24867 -0.006381047194281564 HRYAPCDWYYH 11 Unmodified _HRYAPCDWYYH_ 0 0 0 ENSG00000164746|ENST00000348904|C7orf57;ENST00000461741.1_1_7:48075147-48081223:+|nuORF ENSG00000164746|ENST00000348904|C7orf57 ENSG00000164746|ENST00000348904|C7orf57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 755.822021484375 2 755.819678 1509.6248 -0.20054 -0.00015157 1.7803 0.0013456 1.5798 0.0011941 755.8213464353938 70.364 0.33305 70.364 70.185 70.518 0 33 13 3 0 0 0 0.74157 1 39279 39279 0.35063 0.043601 1 2054600 21017 7239 14275 14548 24868 24868 -0.10962425225216066 HRYDIDEKF 9 Unmodified _HRYDIDEKF_ 0 0 0 REV__ENSG00000182916|ENST00000332431|TCEAL7 REV__ENSG00000182916|ENST00000332431|TCEAL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.7988891601562 2 611.796195 1221.57784 0.69769 0.00042684 3.5153 0.0021507 4.213 0.0025775 611.7980307828454 79.262 0.22816 78.776 78.641 78.87 -0.48596 13 9 2 0 0 0 0.60285 1 43430 43430 0.6015 0 1 406280 + 21018 23307 14276 14549 24869 24869 -0.02408961504738727 HSAAPGPF 8 Unmodified _HSAAPGPF_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8768615722656 2 392.192845 782.371138 -0.18438 -7.2313E-05 0.78676 0.00030856 0.60237 0.00023625 392.193209068633 32.587 0.13423 32.458 32.37 32.505 -0.12915 9 5 2 0 0 0 8.7369 1 16988 16988 2.5775 0 1 1040300 21019 7620 14277 14550 24870 24870 -0.02875284542380996 HSAAVSPTF 9 Unmodified _HSAAVSPTF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7296752929688 2 458.729792 915.445031 -0.40578 -0.00018615 0.44312 0.00020327 0.037331 1.7125E-05 458.73007641365206 32.865 0.21803 32.865 32.811 33.029 0 18 10 2 0 0 0 0.010818 1 17223 17223 78.149 42.105 1 1735500 21020 5307 14278 14551 24871 24871 -0.016073611707270175 HSAAVSPTF 9 Unmodified _HSAAVSPTF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MSMS AL20221201_MKP_PDAC_01 4 458.7305603027344 2 458.729792 915.445031 NaN NaN NaN NaN NaN NaN NaN 37.054 1 32.771 32.271 33.271 -4.2835 0 0 0 0.01764 1 21705 21705 81.613 47.511 1 21021 5307 14278 14551 24872 24872 -0.016073611707270175 HSAEILAAY 9 Unmodified _HSAEILAAY_ 0 0 0 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7196350097656 2 487.750724 973.486896 0.48552 0.00023681 -0.56727 -0.00027669 -0.08175 -3.9874E-05 487.7509295093041 43.086 0.53348 43.086 42.928 43.461 0 47 26 2 0 0 0 0.12183 1 23394 23394 34.102 15.967 1 11078000 21022 7886 14279 14552 24873 24873 -0.0009080548220481433 HSAEILAAY 9 Unmodified _HSAEILAAY_ 0 0 0 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7518920898438 2 487.750724 973.486896 0.83176 0.00040569 0.23093 0.00011264 1.0627 0.00051833 487.7508305080432 47.991 0.65952 42.757 42.482 43.142 -5.2339 92 39 3 0 0 0 0.019303 1 30049 30049 64.236 35.155 1 60181000 21023 7886 14279 14552 24874 24874 -0.0009080548220481433 HSALLALRY 9 Unmodified _HSALLALRY_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3036499023438 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 47.782 1 47.744 47.244 48.244 -0.038643 0 0 0 0.43483 1 25754 25754 18.146 7.3224 1 21024 2208 14280 14553 24875 24875 0.07277155434076121 HSAPGGPSY 9 Unmodified _HSAPGGPSY_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.6981811523438 2 436.698492 871.382431 NaN NaN NaN NaN NaN NaN NaN 17.896 1 17.896 17.396 18.396 0 0 0 0 0.7453 1 8857 8857 7.9102 2.6795 1 21025 6239 14281 14554 24876 24876 -0.05840507238906412 HSAPSSLPY 9 Unmodified _HSAPSSLPY_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7352905273438 2 479.735074 957.455596 -0.87792 -0.00042117 1.1248 0.00053963 0.24693 0.00011846 479.7357902920415 32.733 0.28949 32.733 32.561 32.851 0 31 14 3 0 0 0 0.087258 1 17112 17112 36.044 7.5574 1 2525600 21026 3548 14282 14555 24877 24877 -0.024833785162854838 HSAPTGPASF 10 Unmodified _HSAPTGPASF_ 0 0 0 REV__ENSG00000149474|ENST00000688188|KAT14 REV__ENSG00000149474|ENST00000688188|KAT14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2326354980469 2 486.232699 970.450845 0.84288 0.00040984 0.16604 8.0736E-05 1.0089 0.00049057 486.23276744624246 18.83 0.31248 16.208 16.051 16.364 -2.6215 39 22 2 0 0 0 0.1028 1 9967 9967 46.021 8.047 1 7265300 + 21027 20997 14283 14556 24878 24878 -0.035562626590490254 HSDYRSKL 8 Unmodified _HSDYRSKL_ 0 0 0 ENST00000478678.5_1_6:32154995-32157692:-|nuORF;ENSG00000204304|ENST00000375050|PBX2 ENST00000478678.5_1_6:32154995-32157692:-|nuORF ENST00000478678.5_1_6:32154995-32157692:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.2600708007812 2 503.259248 1004.50394 NaN NaN NaN NaN NaN NaN NaN 32.854 1 28.998 28.498 29.498 -3.8562 0 0 0 0.93587 1 18780 18780 13.508 0 1 21028 10264 14284 14557 24879 24879 0.0018711512361733185 HSEIITSM 8 Unmodified _HSEIITSM_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;ENST00000587391.5_1_19:36573967-36592308:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 459.7199096679688 2 459.223485 916.432418 0.73683 0.00033837 -4.0662 -0.0018673 -3.3294 -0.0015289 459.2234622643629 42.258 0.39566 37.573 37.351 37.747 -4.6846 61 25 3 0 0 0 8.7369 1 25584 25584 46.921 8.9469 1 22454000 21029 1167 14285 14558 24880 24880 -0.029141406252506385 HSEMRRSWGWR 11 Unmodified _HSEMRRSWGWR_ 0 0 0 ENST00000235345.5_1_1:67519584-67519671:-|nuORF ENST00000235345.5_1_1:67519584-67519671:-|nuORF ENST00000235345.5_1_1:67519584-67519671:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.5743713378906 3 496.573954 1486.70003 NaN NaN NaN NaN NaN NaN NaN 18.303 1 18.303 17.803 18.803 0 0 0 0 0.94287 1 9088 9088 0.45452 0 1 21030 11084 14286 14559 24881 24881 -0.023848229741361138 HSENLENWL 9 Unmodified _HSENLENWL_ 0 0 0 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.26953125 2 571.26727 1140.51999 NaN NaN NaN NaN NaN NaN NaN 63.41 1 63.41 62.91 63.91 0 0 0 0 0.51965 1 35370 35370 21.747 8.7042 1 21031 4778 14287 14560 24882 24882 -0.04465223430156584 HSEPRRGKY 9 Unmodified _HSEPRRGKY_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7554931640625 2 565.296696 1128.57884 0.92503 0.00052292 -1.4798 -0.00083652 -0.55476 -0.0003136 565.2959156227869 42.844 0.1898 42.844 42.776 42.966 0 16 9 2 0 0 0 0.20727 1 23279 23279 7.9102 0 1 3231000 + 21032 24317 14288 14561 24883 24883 0.019692976548640218 HSERLPFVPA 10 Unmodified _HSERLPFVPA_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2171325683594 3 384.876857 1151.60874 1.0407 0.00040054 -1.1684 -0.00044969 -0.1277 -4.915E-05 384.8764242119239 35.32 0.63204 31.225 31.007 31.639 -4.0951 128 38 5 0 0 0 0.6606 1 20606 20606 3.8763 0.55669 1 171770000 + 21033 20944 14289 14562 24884 24884 0.03900236600179596 HSETEFFSF 9 Unmodified _HSETEFFSF_ 0 0 0 REV__AluJb_dup56968|chr8:98045693-98046014:+|1.299814409217567|0.0002169198745066|12.55|179.0|19|2|anti-sense REV__AluJb_dup56968|chr8:98045693-98046014:+|1.299814409217567|0.0002169198745066|12.55|179.0|19|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7467651367188 2 565.743096 1129.47164 0.91423 0.00051722 0.79284 0.00044854 1.7071 0.00096576 565.7440986376467 51.269 0.23699 51.269 51.132 51.369 0 21 10 3 0 0 0 0.49272 1 28312 28312 7.9102 0 1 2109200 + 21034 16706 14290 14563 24885 24885 -0.0879171707003934 HSFDVRVL 8 Unmodified _HSFDVRVL_ 0 0 0 nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;ENSG00000157181|ENST00000287859|ODR4 nc|ENSG00000157181|Q5SWX8-3|ODR4 nc|ENSG00000157181|Q5SWX8-3|ODR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7729797363281 2 486.766709 971.518865 0.53079 0.00025837 -1.2928 -0.00062928 -0.76197 -0.0003709 486.7659234366805 74.129 0.71249 74.129 73.807 74.52 0 114 32 5 0 0 0 0.80232 1 41136 41136 5.2307 2.3415 1 11848000 21035 6504 14291 14564 24886 24886 0.03196606991616591 HSFGVTENY 9 Unmodified _HSFGVTENY_ 0 0 0 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2353515625 2 527.235439 1052.45632 -0.20593 -0.00010857 -0.025895 -1.3653E-05 -0.23182 -0.00012223 527.2354114245222 33.819 0.1799 33.819 33.709 33.888 0 15 8 2 0 0 0 0.03568 1 17787 17787 52.268 14.294 1 1591700 21036 4732 14292 14565 24887 24887 -0.06780583867225687 HSGAPDIF 8 Unmodified _HSGAPDIF_ 0 0 0 REV__ENST00000512400.1_1_4:675749-678780:-|nuORF REV__ENST00000512400.1_1_4:675749-678780:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2033996582031 2 422.20341 842.392267 0.23944 0.00010109 0.21242 8.9683E-05 0.45186 0.00019078 422.2034207570339 36.987 0.36219 36.987 36.857 37.219 0 30 17 2 0 0 0 0.5284 1 19654 19654 32.117 8.9685 1 3480800 + 21037 22367 14293 14566 24888 24888 -0.03523319233534039 HSGAPDIF 8 Unmodified _HSGAPDIF_ 0 0 0 REV__ENST00000512400.1_1_4:675749-678780:-|nuORF REV__ENST00000512400.1_1_4:675749-678780:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2047424316406 2 422.20341 842.392267 -0.22755 -9.6073E-05 1.5732 0.0006642 1.3456 0.00056813 422.2040822528139 37.237 0.38508 36.965 36.729 37.114 -0.27133 23 15 2 0 0 0 0.5284 1 19512 19512 32.117 12.678 1 2331100 + 21038 22367 14293 14566 24889 24889 -0.03523319233534039 HSGAPDIF 8 Unmodified _HSGAPDIF_ 0 0 0 REV__ENST00000512400.1_1_4:675749-678780:-|nuORF REV__ENST00000512400.1_1_4:675749-678780:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.2040405273438 2 422.20341 842.392267 NaN NaN NaN NaN NaN NaN NaN 41.478 1 36.87 36.37 37.37 -4.6079 0 0 0 0.90769 1 24914 24914 18.135 1.1927 1 + 21039 22367 14293 14566 24890 24890 -0.03523319233534039 HSGAPDIF 8 Unmodified _HSGAPDIF_ 0 0 0 REV__ENST00000512400.1_1_4:675749-678780:-|nuORF REV__ENST00000512400.1_1_4:675749-678780:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.20341 842.392267 0.23944 0.00010109 0.21242 8.9683E-05 0.45186 0.00019078 422.2034207570339 36.987 0.36219 36.987 36.857 37.219 0 0.010611 -0.00041477 NaN 32.117 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3480800 + 21040 22367 14293 14566 -0.03523319233534039 HSGAPDIF 8 Unmodified _HSGAPDIF_ 0 0 0 REV__ENST00000512400.1_1_4:675749-678780:-|nuORF REV__ENST00000512400.1_1_4:675749-678780:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 422.20341 842.392267 -0.22755 -9.6073E-05 1.5732 0.0006642 1.3456 0.00056813 422.2040822528139 37.237 0.38508 36.965 36.729 37.114 -0.27133 -0.010611 0.00073427 NaN 32.117 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2331100 + 21041 22367 14293 14566 -0.03523319233534039 HSGEAQTAEG 10 Unmodified _HSGEAQTAEG_ 0 0 0 REV__ENST00000356840.7_1_6:16145385-16145523:+|nuORF REV__ENST00000356840.7_1_6:16145385-16145523:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7112731933594 2 493.712328 985.410102 0.96229 0.00047509 -1.6267 -0.00080315 -0.66446 -0.00032805 493.71140343113603 60.158 0.43755 54.043 53.87 54.307 -6.1147 51 22 4 0 0 0 0.63399 1 38679 38679 9.3831 0.035688 1 45995000 + 21042 25831 14294 14567 24891 24891 -0.08318648769329684 HSGPPYGLH 9 Unmodified _HSGPPYGLH_ 0 0 0 REV__ENST00000463472.1_1_22:50969078-50969831:-|nuORF REV__ENST00000463472.1_1_22:50969078-50969831:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.9862365722656 2 482.735409 963.456264 NaN NaN NaN NaN NaN NaN NaN 23.115 1 20.337 19.837 20.837 -2.7784 0 0 0 0.6032 1 12487 12487 12.532 0 1 + 21043 27352 14295 14568 24892 24892 -0.02692539076565481 HSGPVIPVY 9 Unmodified _HSGPVIPVY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7642822265625 2 484.763635 967.512717 -0.12709 -6.1606E-05 0.44357 0.00021503 0.31648 0.00015342 484.76374583657974 48.866 0.38759 48.866 48.675 49.062 0 59 18 4 0 0 0 0.016184 2 26789 26789;26906 67.344 27.387 1 129400000 21044 3028 14296 14569 24893;24894 24893 0.027660887600859496 HSGPVIPVY 9 Unmodified _HSGPVIPVY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7640380859375 2 484.763635 967.512717 0.60112 0.0002914 0.19906 9.6495E-05 0.80017 0.0003879 484.763667963372 49.172 0.42673 48.8 48.597 49.024 -0.37172 76 20 5 0 0 0 0.038285 2 26350 26350;26454 50.855 22.368 1 130270000 21045 3028 14296 14569 24895;24896 24895 0.027660887600859496 HSGPVIPVY 9 Unmodified _HSGPVIPVY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7636413574219 2 484.763635 967.512717 0.40604 0.00019683 -0.51174 -0.00024807 -0.1057 -5.1238E-05 484.7634816045015 48.834 0.27711 48.79 48.631 48.908 -0.04369 28 13 3 0 0 0 0.038285 1 26336 26336 50.855 14.811 1 5344800 21046 3028 14296 14569 24897 24897 0.027660887600859496 HSGPVIPVY 9 Unmodified _HSGPVIPVY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 968.5216064453125 1 968.519993 967.512717 1.0153 0.00098331 0.16964 0.0001643 1.1849 0.0011476 968.5202167178973 54.289 0.45181 48.424 48.19 48.641 -5.8653 68 26 3 0 0 0 0.0025195 2 34430 34249;34430 129.2 80.855 1 46629000 21047 3028 14296 14569 24898;24899 24899 0.027660887600859496 HSGPVIPVY 9 Unmodified _HSGPVIPVY_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7640991210938 2 484.763635 967.512717 1.2525 0.00060719 0.080048 3.8805E-05 1.3326 0.00064599 484.7637828332636 54.288 0.70036 48.422 48.099 48.799 -5.8653 130 41 4 0 0 0 0.023164 2 34402 34402;34541 60.39 31.903 1 677880000 21048 3028 14296 14569 24900;24901 24900 0.027660887600859496 HSHRGKPSIF 10 Unmodified _HSHRGKPSIF_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3148803710938 2 583.314889 1164.61522 NaN NaN NaN NaN NaN NaN NaN 59.355 1 59.302 58.802 59.802 -0.053062 0 0 0 0.24996 1 32344 32344 39.95 12.321 1 21049 3194 14297 14570 24902 24902 0.03950174551573582 HSIEVFTHY 9 Unmodified _HSIEVFTHY_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7749633789062 2 566.774731 1131.53491 0.80003 0.00045344 0.099205 5.6227E-05 0.89924 0.00050966 566.7745815304612 40.648 0.36821 40.345 40.214 40.582 -0.30304 33 17 4 0 0 0 0.0026776 1 21478 21478 128.37 84.593 1 6989300 21050 5022 14298 14571 24903 24903 -0.025597315621325833 HSIEVFTHY 9 Unmodified _HSIEVFTHY_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MSMS AL20221201_MKP_PDAC_01 4 566.7754516601562 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 45.136 1 40.283 39.783 40.783 -4.852 0 0 0 2.4786E-06 1 27655 27655 141.83 78.264 1 21051 5022 14298 14571 24904 24904 -0.025597315621325833 HSIFYKEDAKL 11 Unmodified _HSIFYKEDAKL_ 0 0 0 REV__nc|ENSG00000048392|Q7LG56-2|RRM2B REV__nc|ENSG00000048392|Q7LG56-2|RRM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.9051818847656 3 450.906594 1349.69795 NaN NaN NaN NaN NaN NaN NaN 25.408 1 25.391 24.891 25.891 -0.017006 0 0 0 0.76967 1 13012 13012 13.519 2.0008 1 + 21052 17239 14299 14572 24905 24905 0.03709026769024604 HSILSICMEL 10 Unmodified _HSILSICMEL_ 0 0 0 REV__ENST00000260184.11_1_4:169305884-169305953:-|nuORF REV__ENST00000260184.11_1_4:169305884-169305953:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.0346984863281 3 382.52796 1144.56205 -0.040836 -1.5621E-05 2.3372 0.00089403 2.2963 0.0008784 382.52896479212905 33.112 0.43307 33.142 32.979 33.412 0.029743 22 18 2 0 0 0 0.23693 1 17451 17451 5.7834 3.2849 1 631840 + 21053 24956 14300 14573 24906 24906 -0.004447073376240951 HSISPLLQFR 10 Unmodified _HSISPLLQFR_ 0 0 0 nc|ENSG00000253868|Q96M78|FER1L6-AS2 nc|ENSG00000253868|Q96M78|FER1L6-AS2 nc|ENSG00000253868|Q96M78|FER1L6-AS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8970642089844 3 399.89614 1196.66659 0.55473 0.00022183 1.6555 0.00066201 2.2102 0.00088385 400.2314660358013 45.071 0.21071 40.219 40.115 40.326 -4.852 16 13 2 0 0 0 0.67413 1 27606 27606 5.7834 1.2546 1 7000600 21054 16583 14301 14574 24907 24907 0.07612498525600131 HSITQQNVDF 10 Unmodified _HSITQQNVDF_ 0 0 0 nc|ENSG00000002016|P43351-2|RAD52;nc|ENSG00000002016|P43351-3|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-2|RAD52 nc|ENSG00000002016|P43351-2|RAD52 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5138549804688 3 396.859643 1187.5571 -0.07688 -3.0511E-05 -1.5267 -0.0006059 -1.6036 -0.00063641 396.85933068646244 17.974 0.19899 17.98 17.869 18.068 0.0060463 33 14 3 0 0 0 0.23996 1 9053 9053 1.5923 0.39894 1 7371000 21055 16005 14302 14575 24908 24908 -0.029175518843885584 HSITQQNVDF 10 Unmodified _HSITQQNVDF_ 0 0 0 nc|ENSG00000002016|P43351-2|RAD52;nc|ENSG00000002016|P43351-3|RAD52;ENSG00000002016|ENST00000358495|RAD52 nc|ENSG00000002016|P43351-2|RAD52 nc|ENSG00000002016|P43351-2|RAD52 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 396.859643 1187.5571 -0.5871 -0.000233 -1.6364 -0.00064943 -2.2235 -0.00088243 396.8588435677633 17.97 0.12038 17.97 17.904 18.025 0 0.001335 0.00028704 NaN 1.5923 27 18 2 NaN NaN NaN NaN 0 NaN NaN 0 714880 21056 16005 14302 14575 -0.029175518843885584 HSKAASGH 8 Unmodified _HSKAASGH_ 0 0 0 ENSG00000102195|ENST00000218316|GPR50 ENSG00000102195|ENST00000218316|GPR50 ENSG00000102195|ENST00000218316|GPR50 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.2082824707031 2 397.698826 793.3831 0.6015 0.00023922 2.2369 0.00088963 2.8384 0.0011288 397.69969904514966 27.305 0.37894 24.269 24.14 24.519 -3.0365 28 18 2 0 0 0 8.7369 1 15126 15126 2.0598 0 1 14420000 21057 2027 14303 14576 24909 24909 -0.021856677991877405 HSLCPMSRLL 10 Unmodified _HSLCPMSRLL_ 0 0 0 REV__ENST00000494270.6_1_10:104210065-104211313:+|nuORF REV__ENST00000494270.6_1_10:104210065-104211313:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 578.803466796875 2 578.801911 1155.58927 NaN NaN NaN NaN NaN NaN NaN 68.486 1 62.31 61.81 62.81 -6.1757 0 0 0 0.76313 1 44700 44700 13.906 0 1 + 21058 27901 14304 14577 24910 24910 0.017698209934223996 HSLCPMSRLL 10 Unmodified _HSLCPMSRLL_ 0 0 0 REV__ENST00000494270.6_1_10:104210065-104211313:+|nuORF REV__ENST00000494270.6_1_10:104210065-104211313:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.8701477050781 3 386.2037 1155.58927 0.99163 0.00038297 0.98297 0.00037963 1.9746 0.0007626 386.2040020709646 66.522 1.0914 60.346 59.445 60.537 -6.1757 121 63 3 0 0 0 0.22667 1 43135 43135 9.544 1.3884 1 32973000 + 21059 27901 14304 14577 24911 24911 0.017698209934223996 HSLDLQHSM 9 Oxidation (M) _HSLDLQHSM(Oxidation (M))_ HSLDLQHSM(1) HSLDLQHSM(110) 0 0 1 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6;ENST00000524492.5_1_8:145580604-145580850:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.247802734375 2 542.248023 1082.48149 1.0648 0.00057739 -0.96269 -0.00052202 0.10212 5.5374E-05 542.2474823810994 21.258 0.27493 18.565 18.433 18.708 -2.693 31 21 2 0 0 0 0.0085526 1 11332 11332 107.56 48.195 1 5745300 21060 9045 14305 14578 24912 24912 1518 -0.05644852336331496 HSLDLQHSM 9 Unmodified _HSLDLQHSM_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6;ENST00000524492.5_1_8:145580604-145580850:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.2525634765625 2 534.250566 1066.48658 NaN NaN NaN NaN NaN NaN NaN 33.326 1 29.34 28.84 29.84 -3.9853 0 0 0 0.017932 1 19105 19105 121.53 63.812 1 21061 9045 14305 14579 24913 24913 -0.04400548473699928 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(69)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2608032226562 2 572.260599 1142.50665 0.45406 0.00025984 0.055752 3.1905E-05 0.50981 0.00029175 572.2607376007165 31.382 0.3272 31.382 31.234 31.561 0 42 15 4 0 0 0 0.014182 1 16315 16315 69.338 57.844 1 5509600 21062 1860 14306 14580 24914 24914 307 -0.05890797533720615 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(44)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2608642578125 2 572.260599 1142.50665 0.058443 3.3445E-05 0.71065 0.00040668 0.76909 0.00044012 572.2605335433329 31.703 0.31499 31.703 31.463 31.778 0 27 15 3 0 0 0 0.053952 1 16515 16515 43.982 32.487 1 5412500 21063 1860 14306 14580 24915 24915 307 -0.05890797533720615 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(93)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2599487304688 2 572.260599 1142.50665 0.3938 0.00022536 -0.093867 -5.3716E-05 0.29994 0.00017164 572.2605009385051 31.356 0.1963 31.253 31.161 31.357 -0.10269 17 7 3 0 0 0 0.0081887 1 16304 16304 93.166 77.017 1 5301900 21064 1860 14306 14580 24916 24916 307 -0.05890797533720615 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(53)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2616577148438 2 572.260599 1142.50665 0.29607 0.00016943 0.57077 0.00032663 0.86683 0.00049605 572.260740283666 31.641 0.19549 31.511 31.38 31.575 -0.12915 18 7 3 0 0 0 0.033587 1 16443 16443 53.404 37.557 1 4288900 21065 1860 14306 14580 24917 24917 307 -0.05890797533720615 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(78)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2603759765625 2 572.260599 1142.50665 0.90056 0.00051536 -0.19729 -0.0001129 0.70327 0.00040246 572.2603506294274 35.15 0.28821 31.055 30.935 31.223 -4.0951 28 16 2 0 0 0 0.01085 1 20353 20353 78.06 54.04 1 16880000 21066 1860 14306 14580 24918 24918 307 -0.05890797533720615 HSLDMKFSY 9 Oxidation (M) _HSLDM(Oxidation (M))KFSY_ HSLDM(1)KFSY HSLDM(53)KFSY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 572.29541015625 2 572.260599 1142.50665 0.84279 0.0004823 -0.1944 -0.00011125 0.64839 0.00037105 572.2605515206382 35.556 0.35067 31.363 31.177 31.527 -4.1928 34 21 2 0 0 0 0.025388 1 20718 20718 53.404 48.648 1 15193000 21067 1860 14306 14580 24919 24919 307 -0.05890797533720615 HSLDMKFSY 9 Unmodified _HSLDMKFSY_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.291015625 2 564.263142 1126.51173 1.2099 0.00068272 0.54957 0.0003101 1.7595 0.00099282 564.2635877070365 49.399 0.28931 44.003 43.839 44.128 -5.3961 34 17 3 0 0 0 0.15936 1 30791 30791 27.629 19.473 1 46516000 21068 1860 14306 14581 24920 24920 -0.046464936711117844 HSLFMLFSH 9 Unmodified _HSLFMLFSH_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5201721191406 3 373.519905 1117.53789 -0.56172 -0.00020981 0.66431 0.00024813 0.10259 3.8321E-05 373.5202734334194 18.725 0.16688 18.748 18.683 18.849 0.023106 40 25 2 0 0 0 0.41742 1 9420 9420 7.609 0.97858 1 4213000 21069 1160 14307 14582 24921 24921 -0.016181797089984684 HSLGSVTVLC 10 Unmodified _HSLGSVTVLC_ 0 0 0 ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94;ENST00000579241.1_1_17:73486365-73488110:+|nuORF;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF ENSG00000177728|ENST00000314256|TMEM94 ENSG00000177728|ENST00000314256|TMEM94 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.264404296875 2 508.265684 1014.51682 NaN NaN NaN NaN NaN NaN NaN 27.403 1 27.356 26.856 27.856 -0.046408 0 0 0 0.94014 1 14122 14122 6.2058 1.8765 1 21070 8705 14308 14583 24922 24922 0.010138101914890285 HSLGVLLH 8 Unmodified _HSLGVLLH_ 0 0 0 REV__ENST00000502489.5_1_5:31983264-32077762:+|nuORF REV__ENST00000502489.5_1_5:31983264-32077762:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2281188964844 2 438.25852 874.502486 -0.53944 -0.00023641 0.77169 0.0003382 0.23225 0.00010179 438.2585918274782 19.313 0.11162 19.336 19.273 19.384 0.023106 11 7 2 0 0 0 8.7369 1 9749 9749 6.3541 1.1234 1 197010 + 21071 19922 14309 14584 24923 24923 0.06021525825531171 HSLHIHNVHE 10 Unmodified _HSLHIHNVHE_ 0 0 0 ENST00000469065.1_1_1:156130802-156132957:+|nuORF ENST00000469065.1_1_1:156130802-156132957:+|nuORF ENST00000469065.1_1_1:156130802-156132957:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2061767578125 3 408.207377 1221.6003 NaN NaN NaN NaN NaN NaN NaN 39.017 1 34.566 34.066 35.066 -4.4509 0 0 0 0.94985 1 23098 23098 5.7834 0.88642 1 21072 13823 14310 14585 24924 24924 -0.001633173164236723 HSLKRENVL 9 Unmodified _HSLKRENVL_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000163681|Q14BN4-8|SLMAP;nc|ENSG00000163681|Q14BN4-5|SLMAP;nc|ENSG00000163681|Q14BN4-4|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP FLNB-SLMAP|7|fusion;nc|ENSG00000163681|Q14BN4-2|SLMAP FLNB-SLMAP|7|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.31591796875 2 548.317097 1094.61964 -0.13049 -7.1549E-05 0.97835 0.00053645 0.84786 0.0004649 548.3177772512294 35.972 0.21064 35.997 35.864 36.075 0.024967 15 9 2 0 0 0 0.46162 1 19078 19078 5.7319 0.97584 1 1533100 21073 15895;7046 14311 14586 24925 24925 0.07611638974458401 HSLKRENVL 9 Unmodified _HSLKRENVL_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000163681|Q14BN4-8|SLMAP;nc|ENSG00000163681|Q14BN4-5|SLMAP;nc|ENSG00000163681|Q14BN4-4|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP FLNB-SLMAP|7|fusion;nc|ENSG00000163681|Q14BN4-2|SLMAP FLNB-SLMAP|7|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.317097 1094.61964 -0.58295 -0.00031964 1.4283 0.00078319 0.8454 0.00046354 548.3173030252578 36.326 0.10745 36.076 35.979 36.086 -0.2497 0.039575 0.00019304 NaN 5.7319 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 803220 21074 15895;7046 14311 14586 0.07611638974458401 HSLLASRYSF 10 Unmodified _HSLLASRYSF_ 0 0 0 REV__ENSG00000198315|ENST00000330236|ZKSCAN8 REV__ENSG00000198315|ENST00000330236|ZKSCAN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2087097167969 3 394.208495 1179.60366 -0.076243 -3.0055E-05 0.085359 3.3649E-05 0.0091159 3.5936E-06 394.2082971177783 16.934 0.7546 16.939 16.357 17.112 0.0050564 83 57 3 0 0 0 0.69377 1 8543 8543 1.7423 0 1 1597500 + 21075 24012 14312 14587 24926 24926 0.021039327375319772 HSLLPASNL 9 Unmodified _HSLLPASNL_ 0 0 0 ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2670593261719 2 476.266542 950.51853 0.74702 0.00035578 0.41287 0.00019664 1.1599 0.00055242 476.26662814162137 50.761 0.26134 50.348 50.236 50.498 -0.41351 20 12 2 0 0 0 0.095405 1 27352 27352 34.102 14.845 1 2237500 21076 6811 14313 14588 24927 24927 0.04129187271757928 HSLPFFAAL 9 Unmodified _HSLPFFAAL_ 0 0 0 REV__ENST00000376552.6_1_9:82186909-82187002:+|nuORF REV__ENST00000376552.6_1_9:82186909-82187002:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.7737426757812 2 501.774003 1001.53345 NaN NaN NaN NaN NaN NaN NaN 16.746 1 14.189 13.689 14.689 -2.557 0 0 0 0.6032 1 8697 8697 12.532 0 1 + 21077 26227 14314 14589 24928 24928 0.0327467913974715 HSLPGTQLGAS 11 Unmodified _HSLPGTQLGAS_ 0 0 0 ENST00000606644.1_1:206135664-206137850:-|nuORF;ENST00000494534.1_1:143914258-143915936:+|nuORF;ENST00000429210.1_1:206135664-206137757:-|nuORF ENST00000606644.1_1:206135664-206137850:-|nuORF ENST00000606644.1_1:206135664-206137850:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2794189453125 2 534.277638 1066.54072 NaN NaN NaN NaN NaN NaN NaN 41.661 1 41.354 40.854 41.854 -0.30682 0 0 0 0.21937 1 22083 22083 38.176 12.776 1 21078 13217 14315 14590 24929 24929 0.010113669495467548 HSLSSCSVVF 10 Unmodified _HSLSSCSVVF_ 0 0 0 ENST00000483064.1_1_10:88719196-88722739:+|nuORF ENST00000483064.1_1_10:88719196-88722739:+|nuORF ENST00000483064.1_1_10:88719196-88722739:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2546997070312 2 533.255317 1064.49608 0.11338 6.0458E-05 -0.82263 -0.00043867 -0.70925 -0.00037821 533.2553093325085 43.553 0.26342 43.553 43.341 43.605 0 59 12 5 0 0 0 0.50944 1 23602 23602 15.847 1.9411 1 130240000 21079 14120 14316 14591 24930 24930 -0.033587801881594714 HSLYVTLIL 9 Unmodified _HSLYVTLIL_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7510986328125 2 529.815867 1057.61718 0.75616 0.00040063 0.23352 0.00012372 0.98968 0.00052435 529.8158981705853 57.395 0.29356 57.329 57.201 57.494 -0.066036 21 14 2 0 0 0 0.21367 1 31208 31208 4.756 0 1 3416100 21080 3677 14317 14592 24931 24931 0.09067790516837704 HSMDMKFTY 9 Oxidation (M) _HSMDM(Oxidation (M))KFTY_ HSM(0.003)DM(0.997)KFTY HSM(-25)DM(25)KFTY 0 0 1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2459106445312 2 588.246634 1174.47872 0.55518 0.00032658 -0.57804 -0.00034003 -0.022856 -1.3445E-05 588.2463844257289 32.693 0.35758 28.837 28.67 29.028 -3.8562 39 18 3 0 0 0 0.013609 1 18664 18664 70.332 49.878 2 8945600 21081 3186 14318 14593 24932 24932 562;563 -0.10154443785472722 HSMDMKFTY 9 Oxidation (M) _HSM(Oxidation (M))DMKFTY_ HSM(0.964)DM(0.036)KFTY HSM(14)DM(-14)KFTY 0 0 1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2471313476562 2 588.246634 1174.47872 0.75343 0.0004432 -0.49661 -0.00029213 0.25682 0.00015107 588.2462441813454 36.787 0.42226 32.504 32.297 32.719 -4.2835 73 25 4 0 0 0 0.0088668 2 21416 21416;21533 87.258 66.805 2 19387000 21082 3186 14318 14593 24933;24934 24933 562;563 -0.10154443785472722 HSMDMKFTY 9 Unmodified _HSMDMKFTY_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2495727539062 2 580.249177 1158.4838 0.64575 0.0003747 -0.01417 -8.2224E-06 0.63158 0.00036648 580.249164154743 46.012 0.40856 41.057 40.832 41.241 -4.9549 66 26 3 0 0 0 0.0081437 2 28373 28237;28373 103.42 78.02 1 52552000 21083 3186 14318 14594 24935;24936 24936 -0.08910139922841154 HSMDMKFTY 9 Unmodified _HSMDMKFTY_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20221201_MKP_PDAC_01 4 387.5025939941406 3 387.168544 1158.4838 NaN NaN NaN NaN NaN NaN NaN 45.959 1 41.004 40.504 41.504 -4.9549 0 0 0 0.23566 1 28307 28307 28.495 24.088 1 21084 3186 14318 14594 24937 24937 -0.08910139922841154 HSMLSQQLHSL 11 Unmodified _HSMLSQQLHSL_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.3265991210938 2 640.824429 1279.63431 -0.0013861 -8.8825E-07 0.065123 4.1733E-05 0.063737 4.0844E-05 640.8245161998545 92.612 0.33302 92.612 92.447 92.78 0 35 20 2 0 0 0 0.65846 1 51252 51252 8.1555 0.54658 1 1680400 + 21085 22217 14319 14595 24938 24938 0.005673430603110319 HSNAYFYGF 9 Unmodified _HSNAYFYGF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2394409179688 2 553.240524 1104.46649 -0.22454 -0.00012423 -1.0456 -0.00057845 -1.2701 -0.00070268 553.2400426146842 15.852 0.26341 15.852 15.73 15.994 0 150 61 3 0 0 0 0.56345 1 7618 7618 3.5965 0.31518 1 1975600 21086 1381 14320 14596 24939 24939 -0.08155976142006693 HSNMIKGILYD 11 Unmodified _HSNMIKGILYD_ 0 0 0 REV__nc|ENSG00000135749|A6NKB5-2|PCNX2 REV__nc|ENSG00000135749|A6NKB5-2|PCNX2 MSMS AL20221201_MKP_PDAC_01 4 430.8891296386719 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 21.664 1 18.929 18.429 19.429 -2.7348 0 0 0 0.93669 1 11621 11621 2.2527 0.34635 1 + 21087 25531 14321 14597 24940 24940 0.010571113458354375 HSNSDGIPVIE 11 Unmodified _HSNSDGIPVIE_ 0 0 0 REV__ENSG00000282815|ENST00000695840|TEX13C REV__ENSG00000282815|ENST00000695840|TEX13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.28857421875 2 584.28566 1166.55677 0.42093 0.00024594 1.3803 0.0008065 1.8012 0.0010524 584.2864794948566 57.606 1.2835 57.606 57.346 58.63 0 212 55 6 0 0 0 0.35681 2 32379 32379;32483 23.79 2.2528 1 3923599999.9999995 + 21088 24686 14322 14598 24941;24942 24941 -0.01984971604247221 HSNYKFHPY 9 Unmodified _HSNYKFHPY_ 0 0 0 REV__MER3_dup8600|chr15:59640458-59640632:-|1.0847080353694212|0.2628754538544866|2.04|175.0|17|3|anti-sense REV__MER3_dup8600|chr15:59640458-59640632:-|1.0847080353694212|0.2628754538544866|2.04|175.0|17|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7797241210938 2 596.780348 1191.54614 NaN NaN NaN NaN NaN NaN NaN 75.214 1 75.214 74.714 75.714 0 0 0 0 0.84369 1 41843 41843 2.3027 0 1 + 21089 29460 14323 14599 24943 24943 -0.04196909468009835 HSPFHAPF 8 Unmodified _HSPFHAPF_ 0 0 0 REV__ENST00000475443.1_1_10:103368640-103368784:+|nuORF REV__ENST00000475443.1_1_10:103368640-103368784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 470.229248046875 2 470.22722 938.439886 NaN NaN NaN NaN NaN NaN NaN 47.096 1 42.015 41.515 42.515 -5.0805 0 0 0 0.50394 1 29196 29196 40.449 6.2612 1 + 21090 27573 14324 14600 24944 24944 -0.03179620242678993 HSPFHAPF 8 Unmodified _HSPFHAPF_ 0 0 0 REV__ENST00000475443.1_1_10:103368640-103368784:+|nuORF REV__ENST00000475443.1_1_10:103368640-103368784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 470.2303466796875 2 470.22722 938.439886 NaN NaN NaN NaN NaN NaN NaN 47.293 1 42.213 41.713 42.713 -5.0805 0 0 0 0.59893 1 29339 29339 34.187 7.8461 1 + 21091 27573 14324 14600 24945 24945 -0.03179620242678993 HSPHEECAF 9 Unmodified _HSPHEECAF_ 0 0 0 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7147216796875 2 528.713816 1055.41308 1.0803 0.00057117 0.52041 0.00027515 1.6007 0.00084632 528.7141870132608 50.578 0.46822 45.039 44.775 45.244 -5.5391 86 29 4 0 0 0 0.54444 1 31780 31780 4.756 1.8668 1 110350000 + 21092 29761 14325 14601 24946 24946 -0.11241096916182869 HSPSFGRLL 9 Unmodified _HSPSFGRLL_ 0 0 0 REV__nc|ENSG00000106100|Q9Y239-3|NOD1 REV__nc|ENSG00000106100|Q9Y239-3|NOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2801208496094 2 507.279983 1012.54541 -0.48804 -0.00024758 0.20478 0.00010388 -0.28327 -0.0001437 507.2801119516236 44.828 0.32207 44.512 44.386 44.708 -0.31585 40 17 3 0 0 0 0.19127 1 23897 23897 24.021 4.7636 1 33889000 + 21093 18489 14326 14602 24947 24947 0.039642958829631425 HSPSTALPI 9 Unmodified _HSPSTALPI_ 0 0 0 ENST00000475688.1_1_3:50378843-50379883:-|nuORF ENST00000475688.1_1_3:50378843-50379883:-|nuORF ENST00000475688.1_1_3:50378843-50379883:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7525939941406 2 461.753267 921.491981 1.0385 0.00047952 -0.23311 -0.00010764 0.80536 0.00037188 461.7531955671057 38.034 0.33949 33.665 33.456 33.795 -4.3689 33 20 2 0 0 0 0.042911 1 22320 22320 48.346 0.59716 1 18969000 21094 13966 14327 14603 24948 24948 0.028094983804294316 HSRFRREQWHR 11 Unmodified _HSRFRREQWHR_ 0 0 0 REV__ENST00000482462.1_1_7:540505-540673:-|nuORF REV__ENST00000482462.1_1_7:540505-540673:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.4604187011719 4 399.460716 1593.81376 -0.52768 -0.00021079 -0.20151 -8.0495E-05 -0.72919 -0.00029128 399.4605725461003 17.13 0.09306 17.131 17.099 17.192 0.0010548 52 26 3 0 0 0 0.73349 1 8503 8503 1.1098 1.0365 1 1342700 + 21095 27719 14328 14604 24949 24949 0.040604081831133954 HSRHHHNH 8 Unmodified _HSRHHHNH_ 0 0 0 REV__ENST00000430710.7_1_14:21897217-21897280:-|nuORF REV__ENST00000430710.7_1_14:21897217-21897280:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 531.2503051757812 2 531.247872 1060.48119 NaN NaN NaN NaN NaN NaN NaN 23.128 1 20.349 19.849 20.849 -2.7784 0 0 0 0.94061 1 12494 12494 12.532 0.89125 1 + 21096 26967 14329 14605 24950 24950 -0.04663046430641771 HSRILPTFFF 10 Unmodified _HSRILPTFFF_ 0 0 0 ENST00000337843.6_1_22:37577526-37577784:-|nuORF ENST00000337843.6_1_22:37577526-37577784:-|nuORF ENST00000337843.6_1_22:37577526-37577784:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.8125610351562 2 632.84549 1263.67643 0.57285 0.00036252 1.1102 0.00070259 1.6831 0.0010651 633.3483388176314 101.65 0.074173 95.472 95.429 95.503 -6.1757 5 3 2 0 0 0 0.64183 1 68228 68228 10.074 0 1 7455400 21097 11934 14330 14606 24951 24951 0.055136865309805216 HSRLQHPL 8 Unmodified _HSRLQHPL_ 0 0 0 ENSG00000187678|ENST00000434127|SPRY4;nc|ENSG00000187678|Q9C004-2|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7584838867188 2 494.277775 986.540997 0.25463 0.00012586 -0.66897 -0.00033066 -0.41435 -0.0002048 494.2774134274884 50.582 0.12667 50.582 50.495 50.622 0 8 5 2 0 0 0 8.7369 1 27900 27900 8.5933 0 1 623380 21098 9578 14331 14607 24952 24952 0.047188314600248304 HSRRCRRVA 9 Unmodified _HSRRCRRVA_ 0 0 0 REV__ENSG00000243279|ENST00000553851|PRAF2 REV__ENSG00000243279|ENST00000553851|PRAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8807678222656 3 380.88083 1139.62066 -0.17041 -6.4906E-05 0.82531 0.00031434 0.6549 0.00024944 380.8811871704481 22.053 0.16233 22.076 21.958 22.121 0.022894 11 6 2 0 0 0 0.6149 1 11186 11186 0.20686 0 1 268530 + 21099 24471 14332 14608 24953 24953 0.056435748623925974 HSRRNSPVEGS 11 Unmodified _HSRRNSPVEGS_ 0 0 0 REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF REV__ENST00000445422.5_1_22:24408011-24408092:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2067260742188 3 409.205925 1224.59595 0.8018 0.0003281 -1.6228 -0.00066407 -0.82102 -0.00033597 409.2052491624163 42.222 0.36047 37.537 37.317 37.678 -4.6846 35 22 2 0 0 0 0.59689 1 25405 25405 6.2344 2.3884 1 19217000 + 21100 27132 14333 14609 24954 24954 -0.007368265300101484 HSSCTSDA 8 Unmodified _HSSCTSDA_ 0 0 0 nc|ENSG00000106069|P52757-9|CHN2 nc|ENSG00000106069|P52757-9|CHN2 nc|ENSG00000106069|P52757-9|CHN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1492919921875 2 404.150517 806.286482 NaN NaN NaN NaN NaN NaN NaN 16.522 1 16.523 16.023 17.023 0.0010548 0 0 0 0.97444 1 8152 8152 0.69038 0 1 21101 16105 14334 14610 24955 24955 -0.12441023141309415 HSSCTSFAKY 10 Unmodified _HSSCTSFAKY_ 0 0 0 REV__ENSG00000150261|ENST00000279783|OR8K1 REV__ENSG00000150261|ENST00000279783|OR8K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5031433105469 3 377.502691 1129.48624 1.6234 0.00061285 0.7415 0.00027992 2.3649 0.00089277 377.50289740868317 55.1 0.3639 49.179 49.003 49.366 -5.9211 55 22 3 0 0 0 0.6966 1 35081 35081 1.5923 0.39894 1 43132000 + 21102 21019 14335 14611 24956 24956 -0.07331968193557259 HSSGTFLRY 9 Unmodified _HSSGTFLRY_ 0 0 0 ENST00000263856.8_1_2:86732031-86732436:-|nuORF ENST00000263856.8_1_2:86732031-86732436:-|nuORF ENST00000263856.8_1_2:86732031-86732436:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2679443359375 2 534.267073 1066.51959 NaN NaN NaN NaN NaN NaN NaN 18.95 1 18.95 18.45 19.45 0 0 0 0 0.84737 1 9452 9452 1.8442 0 1 21103 11297 14336 14612 24957 24957 -0.01100598359334981 HSSMPRPDY 9 Unmodified _HSSMPRPDY_ 0 0 0 ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 MSMS AL20221201_MKP_PDAC_01 4 545.2423706054688 2 545.242741 1088.47093 NaN NaN NaN NaN NaN NaN NaN 24.734 1 21.851 21.351 22.351 -2.8831 0 0 0 0.17147 1 13486 13486 36.506 18.36 1 21104 8357 14337 14613 24958 24958 -0.06976834990746283 HSSTQFCAL 9 Unmodified _HSSTQFCAL_ 0 0 0 REV__ENSG00000160447|ENST00000291906|PKN3 REV__ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2269592285156 2 497.226559 992.438566 0.26839 0.00013345 0.44123 0.00021939 0.70962 0.00035284 497.22663671984293 68.784 0.2823 68.304 68.161 68.443 -0.48071 15 12 2 0 0 0 0.58466 1 37616 37616 2.3027 0.24298 1 695120 + 21105 21545 14338 14614 24959 24959 -0.05795622393736721 HSTFLWLKWRF 11 Unmodified _HSTFLWLKWRF_ 0 0 0 ENSG00000221855|ENST00000408916|TAS2R41 ENSG00000221855|ENST00000408916|TAS2R41 ENSG00000221855|ENST00000408916|TAS2R41 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2182312011719 3 507.610223 1519.80884 -0.029198 -1.4821E-05 1.0215 0.00051852 0.99229 0.0005037 507.6107930538518 29.474 0.24765 29.474 29.242 29.489 0 20 11 2 0 0 0 0.30599 1 15259 15259 0.50596 0.41111 1 3043900 21106 10554 14339 14615 24960 24960 0.06972711267758314 HSTLVALFY 9 Unmodified _HSTLVALFY_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.837646484375 2 525.784567 1049.55458 0.23913 0.00012573 -0.46796 -0.00024605 -0.22883 -0.00012032 525.784688173841 74.433 0.25139 74.479 74.321 74.573 0.045967 18 10 2 0 0 0 0.062767 1 41020 41020 48.346 30.211 1 1423300 21107 6122 14340 14616 24961 24961 0.031786444485987886 HSTPPLPK 8 Unmodified _HSTPPLPK_ 0 0 0 ENSG00000107281|ENST00000371601|NPDC1;ENST00000488145.1_1_9:139935475-139940441:-|nuORF ENSG00000107281|ENST00000371601|NPDC1 ENSG00000107281|ENST00000371601|NPDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7510681152344 2 438.750527 875.486502 1.3337 0.00058517 0.010293 4.5162E-06 1.344 0.00058969 438.75052700654237 21.585 0.27827 18.851 18.737 19.015 -2.7348 37 17 3 0 0 0 0.57045 2 11643 11536;11643 28.487 10.352 1 6283800 21108 2486 14341 14617 24962;24963 24963 0.04377819588626153 HSTQQQEEI 9 Unmodified _HSTQQQEEI_ 0 0 0 REV__ENSG00000103047|ENST00000261778|TANGO6 REV__ENSG00000103047|ENST00000261778|TANGO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2538452148438 2 550.25436 1098.49417 0.60924 0.00033524 0.1283 7.06E-05 0.73755 0.00040584 550.2546410772638 74.384 0.35069 74.384 74.21 74.56 0 28 15 2 0 0 0 0.59218 1 41468 41468 1.8442 0 1 670970 + 21109 18280 14342 14618 24964 24964 -0.0511411767242862 HSVADNHPLA 10 Unmodified _HSVADNHPLA_ 0 0 0 REV__ENST00000217131.5_1_20:57570464-57570518:-|nuORF REV__ENST00000217131.5_1_20:57570464-57570518:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2960205078125 2 530.762155 1059.50976 0.11179 5.9332E-05 -1.0128 -0.00053753 -0.90097 -0.0004782 530.7622617573641 66.456 0.18786 65.973 65.902 66.09 -0.48324 13 8 2 0 0 0 0.22667 1 36329 36329 15.847 10.617 1 734950 + 21110 24747 14343 14619 24965 24965 -0.01761786364704676 HSVGVQMRSA 10 Unmodified _HSVGVQMRSA_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7747802734375 2 536.271832 1070.52911 -0.18102 -9.7078E-05 1.854 0.00099426 1.673 0.00089718 536.2720452045417 24.324 0.49321 24.324 24.099 24.592 0 77 28 5 0 0 0 0.57893 1 12514 12514 12.241 4.3305 1 6328900 21111 1438 14344 14620 24966 24966 -0.003331533454684177 HSVIHIQAVNA 11 Unmodified _HSVIHIQAVNA_ 0 0 0 CELSR3|p.D677N|1|0.19|ENSG00000008300|chr3:48660606-48660606|C/T|missense_variant CELSR3|p.D677N|1|0.19|ENSG00000008300|chr3:48660606-48660606|C/T|missense_variant CELSR3|p.D677N|1|0.19|ENSG00000008300|chr3:48660606-48660606|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8269653320312 2 594.827829 1187.64111 -0.49744 -0.00029589 -1.4153 -0.00084185 -1.9127 -0.0011377 594.8268162133537 29.705 0.15208 29.705 29.608 29.76 0 12 7 2 0 0 0 0.6889 1 15405 15405 5.2969 2.7984 1 1577700 21112 60 14345 14621 24967 24967 0.05479024003216182 HSVLIHEYY 9 Unmodified _HSVLIHEYY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7900390625 2 580.790381 1159.56621 0.62663 0.00036394 -0.96136 -0.00055835 -0.33473 -0.00019441 580.7898715996486 36.395 0.17984 36.395 36.269 36.448 0 14 8 2 0 0 0 0.047196 1 19303 19303 46.021 33.489 1 1901400 21113 8515 14346 14622 24968 24968 -0.0071915852806796465 HSVLIHEYY 9 Unmodified _HSVLIHEYY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7904052734375 2 580.790381 1159.56621 -0.40835 -0.00023717 -0.091245 -5.2994E-05 -0.49959 -0.00029016 580.7904009531131 36.644 0.19831 36.395 36.273 36.471 -0.2497 14 8 2 0 0 0 0.00856 1 19231 19231 100.37 81.115 1 4154500 21114 8515 14346 14622 24969 24969 -0.0071915852806796465 HSVLIHEYY 9 Unmodified _HSVLIHEYY_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7892456054688 2 580.790381 1159.56621 0.92783 0.00053888 -0.96513 -0.00056054 -0.037299 -2.1663E-05 580.7897850536458 41.128 0.22995 36.52 36.353 36.583 -4.6079 26 13 2 0 0 0 0.0088174 1 24602 24602 103.75 78.349 1 17704000 21115 8515 14346 14622 24970 24970 -0.0071915852806796465 HSVMKVQWPF 10 Unmodified _HSVMKVQWPF_ 0 0 0 REV__HPR|p.A119V|1|0.23|ENSG00000261701|chr16:72076390-72076390|C/T|missense_variant REV__HPR|p.A119V|1|0.23|ENSG00000261701|chr16:72076390-72076390|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.833251953125 2 629.823701 1257.63285 0.332 0.0002091 0.74177 0.00046718 1.0738 0.00067628 629.8243931854032 69.844 0.446 69.875 69.664 70.11 0.030914 75 22 5 0 0 0 0.50362 1 38332 38332 16.149 0.30192 1 81485000 + 21116 29386 14347 14623 24971 24971 0.014337537622168384 HSVPPHYTEL 10 Unmodified _HSVPPHYTEL_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1993103027344 3 393.864617 1178.57202 -0.63619 -0.00025057 -0.015095 -5.9452E-06 -0.65129 -0.00025652 394.19902058923134 16.744 0.1604 16.744 16.65 16.81 0 57 40 2 0 0 0 0.71123 1 8149 8149 0.69767 0 1 1059400 21117 943 14348 14624 24972 24972 -0.010120600163645577 HSVSNYHVL 9 Unmodified _HSVSNYHVL_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000140836|ENST00000268489|ZFHX3 MSMS AL20221201_MKP_PDAC_01 4 352.5130920410156 3 352.513807 1054.51959 NaN NaN NaN NaN NaN NaN NaN 26.278 1 23.327 22.827 23.827 -2.9511 0 0 0 0.6557 1 14462 14462 7.1017 1.3183 1 + 21118 20496;20157 14349 14625 24973 24973 -0.005485983593416677 HSWHESDSF 9 Unmodified _HSWHESDSF_ 0 0 0 nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L;nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2283935546875 2 566.228145 1130.44174 -0.24128 -0.00013662 -1.4198 -0.00080395 -1.6611 -0.00094057 566.2276113638952 25.784 0.1661 25.784 25.695 25.862 0 13 7 3 0 0 0 0.07916 1 13239 13239 37.974 27.9 1 1190100 21119 1542 14350 14626 24974 24974 -0.11826656015387016 HSWHESDSF 9 Unmodified _HSWHESDSF_ 0 0 0 nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L;nc|ENSG00000089916|Q9NWQ4-1|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.324951171875 2 566.228145 1130.44174 0.9319 0.00052767 0.83599 0.00047336 1.7679 0.001001 566.2284762210188 28.718 0.17554 25.569 25.458 25.633 -3.1482 17 8 3 0 0 0 0.19205 1 16067 16067 14.838 10.082 1 6985200 21120 1542 14350 14626 24975 24975 -0.11826656015387016 HSYKAEEY 8 Unmodified _HSYKAEEY_ 0 0 0 ENSG00000054118|ENST00000354618|THRAP3 ENSG00000054118|ENST00000354618|THRAP3 ENSG00000054118|ENST00000354618|THRAP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.75537109375 2 513.729989 1025.44543 0.72934 0.00037469 -0.55504 -0.00028514 0.17431 8.9546E-05 513.7295366445952 36.48 0.19986 36.48 36.388 36.588 0 16 9 2 0 0 0 8.7369 1 19321 19321 7.9102 0 1 2006400 21121 753 14351 14627 24976 24976 -0.06627986241505823 HTALYDRML 9 Unmodified _HTALYDRML_ 0 0 0 REV__ENSG00000198113|ENST00000357503|TOR4A REV__ENSG00000198113|ENST00000357503|TOR4A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1797790527344 3 373.858698 1118.55426 0.63002 0.00023554 -0.47263 -0.0001767 0.15739 5.8841E-05 373.85837056117197 40.663 0.24797 40.36 40.234 40.482 -0.30304 19 11 2 0 0 0 0.20727 1 21500 21500 4.897 2.1618 1 4362400 + 21122 23991 14352 14628 24977 24977 -0.00027098542886960786 HTALYDRML 9 Unmodified _HTALYDRML_ 0 0 0 REV__ENSG00000198113|ENST00000357503|TOR4A REV__ENSG00000198113|ENST00000357503|TOR4A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1799926757812 3 373.858698 1118.55426 0.57147 0.00021365 0.50535 0.00018893 1.0768 0.00040258 373.85882035342604 40.476 0.2076 40.178 40.073 40.281 -0.29716 16 9 2 0 0 0 0.20727 1 21392 21392 2.4985 0 1 3423800 + 21123 23991 14352 14628 24978 24978 -0.00027098542886960786 HTAWSGKFCE 10 Unmodified _HTAWSGKFCE_ 0 0 0 REV__ENST00000513199.5_1_4:99943548-99960531:+|nuORF REV__ENST00000513199.5_1_4:99943548-99960531:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1744689941406 3 389.174686 1164.50223 -0.45221 -0.00017599 -0.22776 -8.8639E-05 -0.67997 -0.00026463 389.17469115927895 35.982 0.25093 35.759 35.642 35.893 -0.2224 46 11 5 0 0 0 0.66569 1 18911 18911 6.1918 2.2475 1 129550000 + 21124 21850 14353 14629 24979 24979 -0.07344261956609444 HTCDHWIYY 9 Unmodified _HTCDHWIYY_ 0 0 0 REV__ENSG00000138079|ENST00000260649|SLC3A1 REV__ENSG00000138079|ENST00000260649|SLC3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5087585449219 3 413.174686 1236.50223 0.41985 0.00017347 0.71784 0.0002966 1.1377 0.00047007 413.1752809023782 23.952 0.18963 21.125 21.024 21.213 -2.8273 17 10 2 0 0 0 0.58145 1 12947 12947 2.4985 1.8008 1 3527200 + 21125 20299 14354 14630 24980 24980 -0.10656261956637536 HTCKPYTWT 9 Unmodified _HTCKPYTWT_ 0 0 0 ENST00000434570.6_1_22:20052429-20053083:+|nuORF ENST00000434570.6_1_22:20052429-20053083:+|nuORF ENST00000434570.6_1_22:20052429-20053083:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.51123046875 3 379.511298 1135.51206 -0.71721 -0.00027219 0.76544 0.00029049 0.048234 1.8305E-05 379.51155700300865 27.652 0.43736 27.652 27.508 27.945 0 55 20 4 0 0 0 0.53557 1 14288 14288 5.2969 5.2969 1 11065000 21126 13300 14355 14631 24981 24981 -0.05027073951282546 HTCKPYTWT 9 Unmodified _HTCKPYTWT_ 0 0 0 ENST00000434570.6_1_22:20052429-20053083:+|nuORF ENST00000434570.6_1_22:20052429-20053083:+|nuORF ENST00000434570.6_1_22:20052429-20053083:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.511298 1135.51206 0.54837 0.00020811 -0.18387 -6.9779E-05 0.36451 0.00013834 379.51115052643024 27.959 0.21598 27.913 27.797 28.013 -0.046408 0.1306 -0.00069292 NaN 5.2969 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 8710800 21127 13300 14355 14631 -0.05027073951282546 HTCLSCSMFE 10 Unmodified _HTCLSCSMFE_ 0 0 0 ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.4859313964844 3 386.485655 1156.43514 0.78134 0.00030198 -0.90549 -0.00034996 -0.12415 -4.7982E-05 386.4854250367918 46.639 0.25059 41.559 41.359 41.61 -5.0805 61 47 2 0 0 0 0.69064 1 28774 28774 1.9064 0.69154 1 131780000 21128 15765 14356 14632 24982 24982 -0.1368237655426583 HTCLSCSMFE 10 Unmodified _HTCLSCSMFE_ 0 0 0 ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.4857788085938 3 386.485655 1156.43514 NaN NaN NaN NaN NaN NaN NaN 46.906 1 41.826 41.326 42.326 -5.0805 0 0 0 0.96981 1 29051 29051 1.9064 0.57673 1 21129 15765 14356 14632 24983 24983 -0.1368237655426583 HTCLSCSMFE 10 Unmodified _HTCLSCSMFE_ 0 0 0 ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.4860534667969 3 386.485655 1156.43514 NaN NaN NaN NaN NaN NaN NaN 47.08 1 41.999 41.499 42.499 -5.0805 0 0 0 0.96981 1 29183 29183 1.9064 0.57673 1 21130 15765 14356 14632 24984 24984 -0.1368237655426583 HTCLSCSMFE 10 Unmodified _HTCLSCSMFE_ 0 0 0 ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF ENST00000596456.1_1_19:40948326-40950148:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.4858703613281 3 386.485655 1156.43514 NaN NaN NaN NaN NaN NaN NaN 47.255 1 42.175 41.675 42.675 -5.0805 0 0 0 0.96981 1 29312 29312 1.9064 0.57673 1 21131 15765 14356 14632 24985 24985 -0.1368237655426583 HTDTHKYAF 9 Unmodified _HTDTHKYAF_ 0 0 0 ENST00000470435.5_1_7:144047851-144051157:-|nuORF ENST00000470435.5_1_7:144047851-144051157:-|nuORF ENST00000470435.5_1_7:144047851-144051157:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8692626953125 3 373.845446 1118.51451 -0.29185 -0.00010911 -0.2001 -7.4808E-05 -0.49195 -0.00018391 374.17978507937795 41.811 0.50919 41.504 41.308 41.817 -0.30682 30 24 2 0 0 0 0.20528 1 22307 22307 1.0715 0 1 13403000 21132 13854 14357 14633 24986 24986 -0.04000902221969227 HTDVSLSPEER 11 Unmodified _HTDVSLSPEER_ 0 0 0 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MSMS AL20221201_MKP_PDAC_01 4 635.3524780273438 2 635.307123 1268.59969 NaN NaN NaN NaN NaN NaN NaN 47.327 1 42.247 41.747 42.747 -5.0805 0 0 0 0.77961 1 29365 29365 13.042 4.2971 1 21133 5023 14358 14634 24987 24987 -0.023862015468239406 HTEERYHECNE 11 Unmodified _HTEERYHECNE_ 0 0 0 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 ENSG00000180787|ENST00000318833|ZFP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7311401367188 3 482.861607 1445.56299 -0.59833 -0.00028891 1.4401 0.00069538 0.8418 0.00040647 482.8621915765679 32.977 0.21719 32.977 32.851 33.068 0 22 10 3 0 0 0 0.306 1 17276 17276 0.45452 0.29519 1 2136900 21134 8924 14359 14635 24988 24988 -0.14196821435007223 HTEFHVFGF 9 Unmodified _HTEFHVFGF_ 0 0 0 REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1791076660156 3 374.178536 1119.51378 -0.42604 -0.00015941 1.2339 0.00046169 0.80785 0.00030228 374.1791451200465 29.518 0.40009 29.518 29.262 29.662 0 111 23 6 0 0 0 0.54444 1 15341 15341 2.7352 0 1 3025599999.9999995 + 21135 18129 14360 14636 24989 24989 -0.041196968709982684 HTEFHVFGF 9 Unmodified _HTEFHVFGF_ 0 0 0 REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1799926757812 3 374.178536 1119.51378 0.64531 0.00024146 1.2996 0.00048628 1.9449 0.00072774 374.1791829855826 29.713 0.65255 29.633 29.525 30.178 -0.080429 126 27 6 0 0 0 0.54444 1 15593 15593 2.7352 2.7352 1 7130799999.999999 + 21136 18129 14360 14636 24990 24990 -0.041196968709982684 HTEFHVFGF 9 Unmodified _HTEFHVFGF_ 0 0 0 REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L REV__nc|ENSG00000101104|Q4VXU2-2|PABPC1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1797485351562 3 374.178536 1119.51378 1.566 0.00058597 0.74546 0.00027894 2.3115 0.00086491 374.17894391427086 33.411 1.1798 29.426 29.264 30.444 -3.9853 329 66 6 0 0 0 0.48152 2 19357 19357;19609 5.2969 0 1 15195000000 + 21137 18129 14360 14636 24991;24992 24991 -0.041196968709982684 HTERTNTFM 9 Unmodified _HTERTNTFM_ 0 0 0 REV__nc|ENSG00000138802|O95487-2|SEC24B REV__nc|ENSG00000138802|O95487-2|SEC24B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5106811523438 3 379.509957 1135.50804 NaN NaN NaN NaN NaN NaN NaN 26.245 1 26.213 25.713 26.713 -0.031708 0 0 0 0.71962 1 13490 13490 8.7454 0.58988 1 + 21138 20372 14361 14637 24993 24993 -0.05429163444978258 HTETFFPVW 9 Unmodified _HTETFFPVW_ 0 0 0 REV__ENST00000266771.9_1_12:129278384-129278573:-|nuORF REV__ENST00000266771.9_1_12:129278384-129278573:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5212097167969 3 388.522192 1162.54475 -0.39416 -0.00015314 -2.6615 -0.001034 -3.0556 -0.0011872 388.5211791393751 24.11 0.15741 24.11 24.016 24.174 0 9 7 2 0 0 0 0.55144 1 12320 12320 4.897 0.70751 1 622650 + 21139 25106 14362 14638 24994 24994 -0.030025435567722525 HTETMFQLP 9 Unmodified _HTETMFQLP_ 0 0 0 ENST00000396029.7_1_20:49520462-49545204:-|nuORF ENST00000396029.7_1_20:49520462-49545204:-|nuORF ENST00000396029.7_1_20:49520462-49545204:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5101318359375 3 368.511187 1102.51173 NaN NaN NaN NaN NaN NaN NaN 29.877 1 29.797 29.297 30.297 -0.080429 0 0 0 0.82739 1 15488 15488 2.4985 0 1 21140 12782 14363 14639 24995 24995 -0.035424936711251576 HTFDGFLFH 9 Unmodified _HTFDGFLFH_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.180419921875 3 374.178536 1119.51378 -0.42604 -0.00015941 1.2339 0.00046169 0.80785 0.00030228 374.1791451200465 29.518 0.40009 29.518 29.262 29.662 0 111 23 6 0 0 0 0.48152 1 15241 15241 5.2969 5.2969 1 3025599999.9999995 21141 2684 14364 14640 24996 24996 -0.04119696871021006 HTFDGFLFH 9 Unmodified _HTFDGFLFH_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.18017578125 3 374.178536 1119.51378 0.64531 0.00024146 1.2996 0.00048628 1.9449 0.00072774 374.1791829855826 29.713 0.65255 29.633 29.525 30.178 -0.080429 126 27 6 0 0 0 0.20528 1 15694 15694 5.2969 1.3525 1 7130799999.999999 21142 2684 14364 14640 24997 24997 -0.04119696871021006 HTFDGFLFH 9 Unmodified _HTFDGFLFH_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1795349121094 3 374.178536 1119.51378 1.566 0.00058597 0.74546 0.00027894 2.3115 0.00086491 374.17894391427086 33.411 1.1798 29.426 29.264 30.444 -3.9853 329 66 6 0 0 0 0.37804 2 19119 19119;19482 13.042 13.042 1 15195000000 21143 2684 14364 14640 24998;24999 24998 -0.04119696871021006 HTFEEAEKGF 10 Unmodified _HTFEEAEKGF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.851318359375 3 398.852377 1193.5353 -0.29424 -0.00011736 -2.2962 -0.00091586 -2.5905 -0.0010332 398.8515166062058 20.821 0.24517 20.849 20.711 20.956 0.028355 24 10 3 0 0 0 0.70895 1 10560 10560 1.9064 0.71303 1 987490 21144 10153 14365 14641 25000 25000 -0.05372356632960873 HTFLCSKHF 9 Unmodified _HTFLCSKHF_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5201721191406 3 373.851655 1118.53313 -0.56131 -0.00020985 1.5782 0.00059 1.0168 0.00038015 373.8523391433334 18.844 0.25576 18.867 18.706 18.962 0.023106 69 28 4 0 0 0 0.20528 1 9420 9420 2.7352 0 1 2986200 21145 8326 14366 14642 25001 25001 -0.021390638517686966 HTFLWTDGR 9 Unmodified _HTFLWTDGR_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.8060913085938 2 566.780348 1131.54614 1.2824 0.00072683 0.54328 0.00030792 1.8257 0.0010347 566.7806767540837 90.493 0.64854 84.317 84.091 84.74 -6.1757 85 38 3 0 0 0 0.209 1 59957 59957 7.2892 2.0586 1 28944000 21146 10828 14367 14643 25002 25002 -0.014369094680205308 HTFNPKVIL 9 Unmodified _HTFNPKVIL_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2141723632812 3 356.878198 1067.61277 -0.15935 -5.6867E-05 0.93905 0.00033513 0.77971 0.00027826 356.87836505462474 35.457 0.37236 35.482 35.351 35.723 0.024967 51 17 4 0 0 0 0.50598 1 18859 18859 7.1017 0 1 18211000 21147 261 14368 14644 25003 25003 0.08166326093919452 HTFPFPDDL 9 Unmodified _HTFPFPDDL_ 0 0 0 ENST00000397086.6_2_16:2303455-2303809:-|nuORF ENST00000397086.6_2_16:2303455-2303809:-|nuORF ENST00000397086.6_2_16:2303455-2303809:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.5088806152344 3 363.50643 1087.49746 NaN NaN NaN NaN NaN NaN NaN 46.968 1 41.888 41.388 42.388 -5.0805 0 0 0 0.6032 1 29098 29098 8.1555 4.2111 1 21148 12815 14369 14645 25004 25004 -0.042788228277458984 HTFTHAGLWS 10 Unmodified _HTFTHAGLWS_ 0 0 0 ENST00000355387.6_1_1:45116522-45116732:+|nuORF ENST00000355387.6_1_1:45116522-45116732:+|nuORF ENST00000355387.6_1_1:45116522-45116732:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1898193359375 3 386.189324 1155.54614 NaN NaN NaN NaN NaN NaN NaN 20.951 1 20.979 20.479 21.479 0.028357 0 0 0 0.99248 1 10617 10617 0.62683 0 1 21149 12075 14370 14646 25005 25005 -0.025409094679844202 HTFWERNLPS 10 Unmodified _HTFWERNLPS_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA;nc|ENSG00000189221|P21397-2|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.5484313964844 3 429.5474 1285.62037 -0.53466 -0.00022966 1.1233 0.00048252 0.58866 0.00025286 429.5483507860496 16.579 0.26265 16.579 16.425 16.688 0 208 71 4 0 0 0 0.7191 1 8110 8110 0.77653 0 1 5106300 21150 9736 14371 14647 25006 25006 -0.011015663764737837 HTGDTGLS 8 Unmodified _HTGDTGLS_ 0 0 0 REV__ENST00000519217.1_1_8:105441771-105456521:-|nuORF REV__ENST00000519217.1_1_8:105441771-105456521:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1810607910156 2 394.182675 786.350796 0.67087 0.00026444 -3.862 -0.0015223 -3.1911 -0.0012579 394.1811783734 29.725 0.39348 29.644 29.501 29.895 -0.080429 32 17 2 0 0 0 0.80232 1 15344 15344 5.2307 2.3415 1 28571000 + 21151 17526 14372 14648 25007 25007 -0.05092499992838384 HTGIVPDSN 9 Unmodified _HTGIVPDSN_ 0 0 0 REV__ENSG00000155307|ENST00000400566|SAMSN1 REV__ENSG00000155307|ENST00000400566|SAMSN1 MSMS AL20221201_MKP_PDAC_01 4 470.2286682128906 2 470.230156 938.445759 NaN NaN NaN NaN NaN NaN NaN 46.921 1 41.841 41.341 42.341 -5.0805 0 0 0 0.18351 1 29063 29063 32.786 4.6125 1 + 21152 21266 14373 14649 25008 25008 -0.025925665216618654 HTGPGLLSM 9 Unmodified _HTGPGLLSM_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;ENST00000470213.5_1_1:40214588-40218763:+|nuORF;ENST00000482751.5_1_1:40208803-40219024:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE ENSG00000153201|ENST00000283195|RANBP2;ENST00000482751.5_1_1:40208803-40219024:+|nuORF ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7347106933594 2 456.73402 911.453487 1.2997 0.0005936 3.5886 0.001639 4.8882 0.0022326 456.7339275317435 53.951 0.52769 48.086 47.838 48.366 -5.8653 60 31 3 0 0 0 0.026094 2 34211 34075;34211 57.471 0 1 45272000 21153 6246;1380 14374 14650 25009;25010 25010 -0.005781305257414715 HTGYYGSPFH 10 Unmodified _HTGYYGSPFH_ 0 0 0 REV__ENST00000372899.5_1_6:42643825-42644554:+|nuORF REV__ENST00000372899.5_1_6:42643825-42644554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.256591796875 2 583.256705 1164.49886 -0.10045 -5.8588E-05 2.3163 0.001351 2.2159 0.0012924 583.2580233392888 35.572 0.21518 35.572 35.479 35.694 0 13 10 2 0 0 0 0.42068 1 18827 18827 20.454 7.4112 1 3622500 + 21154 26130 14375 14651 25011 25011 -0.0768118873900221 HTHMVKFN 8 Unmodified _HTHMVKFN_ 0 0 0 ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2530822753906 2 507.252911 1012.49127 NaN NaN NaN NaN NaN NaN NaN 19.818 1 19.825 19.325 20.325 0.0078487 0 0 0 0.97444 1 10091 10091 0.69038 0 1 21155 6792 14376 14652 25012 25012 -0.014476195402608028 HTHPEAPEAGH 11 Unmodified _HTHPEAPEAGH_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MSMS AL20221201_MKP_PDAC_01 4 591.7669677734375 2 591.767968 1181.52138 NaN NaN NaN NaN NaN NaN NaN 36.333 1 32.14 31.64 32.64 -4.1928 0 0 0 0.67092 1 21205 21205 18.146 1.2041 1 + 21156 24387 14377 14653 25013 25013 -0.0621158934138748 HTHPSRHHL 9 Unmodified _HTHPSRHHL_ 0 0 0 REV__ENSG00000170175|ENST00000306071|CHRNB1 REV__ENSG00000170175|ENST00000306071|CHRNB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1803588867188 3 374.528562 1120.56386 1.1462 0.00042927 0.38664 0.00014481 1.5328 0.00057408 374.528925196572 39.687 0.1425 35.236 35.107 35.25 -4.4509 11 8 2 0 0 0 0.21367 1 23565 23565 2.7352 0 1 5004200 + 21157 22451 14378 14654 25014 25014 0.00839850577517609 HTISEKPREDP 11 Unmodified _HTISEKPREDP_ 0 0 0 ENST00000587110.1_1_17:41796950-41797316:-|nuORF ENST00000587110.1_1_17:41796950-41797316:-|nuORF ENST00000587110.1_1_17:41796950-41797316:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.8308715820312 2 654.830766 1307.64698 -0.50519 -0.00033082 0.68318 0.00044737 0.17798 0.00011655 654.831317464237 36.346 0.24176 36.096 35.952 36.193 -0.2497 18 10 3 0 0 0 0.63534 1 19070 19070 9.544 2.4423 1 3077500 21158 15634 14379 14655 25015 25015 0.005460777241978576 HTLFAVDFN 9 Unmodified _HTLFAVDFN_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.8858947753906 3 355.178425 1062.51345 1.3353 0.00047428 -0.93336 -0.00033151 0.40195 0.00014277 355.17780274067155 46.022 0.54169 41.067 40.759 41.301 -4.9549 52 35 2 0 0 0 0.20727 1 28314 28314 2.4985 0 1 23569000 + 21159 23122 14380 14656 25016 25016 -0.015311165908542534 HTLGFPGR 8 Unmodified _HTLGFPGR_ 0 0 0 ENSG00000137675|ENST00000260229|MMP27 ENSG00000137675|ENST00000260229|MMP27 ENSG00000137675|ENST00000260229|MMP27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7409362792969 2 442.740494 883.466435 0.22278 9.8634E-05 -0.1643 -7.2742E-05 0.058483 2.5893E-05 442.7405127006391 35.589 0.20753 35.614 35.474 35.682 0.024967 19 9 3 0 0 0 0.48669 1 18813 18813 36.044 7.5574 1 5156000 21160 4957 14381 14657 25017 25017 0.02004068648670909 HTLGFPGR 8 Unmodified _HTLGFPGR_ 0 0 0 ENSG00000137675|ENST00000260229|MMP27 ENSG00000137675|ENST00000260229|MMP27 ENSG00000137675|ENST00000260229|MMP27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 442.740494 883.466435 0.22278 9.8634E-05 -0.1643 -7.2742E-05 0.058483 2.5893E-05 442.7405127006391 35.589 0.20753 35.614 35.474 35.682 0.024967 0 0 NaN 36.044 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 5156000 21161 4957 14381 14657 0.02004068648670909 HTPDPSRNSPA 11 Unmodified _HTPDPSRNSPA_ 0 0 0 REV__CON__Q28107 REV__CON__Q28107 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.52392578125 3 393.523143 1177.5476 NaN NaN NaN NaN NaN NaN NaN 33.001 1 32.841 32.341 33.341 -0.15918 0 0 0 0.93613 1 17201 17201 2.4348 0 1 + + 21162 16864 14382 14658 25018 25018 -0.03407320169890227 HTPERGGR 8 Unmodified _HTPERGGR_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MSMS AL20221201_MKP_PDAC_01 4 455.238037109375 2 455.236107 908.457661 NaN NaN NaN NaN NaN NaN NaN 19.033 1 16.411 15.911 16.911 -2.6215 0 0 0 0.88073 1 10055 10055 19.439 0 1 21163 3742 14383 14659 25019 25019 -0.00022904987804395205 HTPSHCGF 8 Unmodified _HTPSHCGF_ 0 0 0 ENST00000602430.1_1_3:51575458-51575656:+|nuORF ENST00000602430.1_1_3:51575458-51575656:+|nuORF ENST00000602430.1_1_3:51575458-51575656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.1884155273438 2 443.187237 884.359921 0.6239 0.00027651 1.3487 0.00059775 1.9726 0.00087425 443.1876820884329 64.246 0.3774 63.761 63.572 63.949 -0.48512 43 17 3 0 0 0 0.80975 1 35003 35003 0.79363 0 1 5177500 21164 15818 14384 14660 25020 25020 -0.08688429908158923 HTQFSHCYSF 10 Unmodified _HTQFSHCYSF_ 0 0 0 REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF REV__ENST00000435033.1_1_19:12491157-12492084:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.7633056640625 2 628.761297 1255.50804 0.14832 9.3256E-05 1.5935 0.001002 1.7419 0.0010952 628.7627928193785 76.024 0.18163 75.545 75.502 75.684 -0.47945 10 7 2 0 0 0 0.71276 1 41674 41674 1.4819 0.28856 1 470140 + 21165 27015 14385 14661 25021 25021 -0.10949163445002341 HTQKYAEVY 9 Unmodified _HTQKYAEVY_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.1993408203125 2 569.780013 1137.54547 -0.10398 -5.9243E-05 -3.259 -0.0018569 -3.363 -0.0019162 569.7774964235579 45.016 0.20751 45.016 44.925 45.132 0 15 10 2 0 0 0 0.1176 1 24483 24483 29.082 12.139 1 5565800 + 21166 23807 14386 14662 25022 25022 -0.017797489077111095 HTQQGEHTR 9 Unmodified _HTQQGEHTR_ 0 0 0 nc|ENSG00000167524|Q96LW2-2|RSKR;nc|ENSG00000167524|Q96LW2-3|RSKR;ENSG00000258472|ENST00000531839|unknown;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR nc|ENSG00000167524|Q96LW2-2|RSKR nc|ENSG00000167524|Q96LW2-2|RSKR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1769104003906 3 365.175966 1092.50607 0.41434 0.00015131 0.52629 0.00019219 0.94063 0.00034349 365.1762253322357 40.297 0.25211 40 39.862 40.114 -0.29716 34 11 4 0 0 0 0.52844 1 21274 21274 3.5871 0 1 6448800 21167 7622 14387 14663 25023 25023 -0.036484561385805137 HTQRQAEET 9 Unmodified _HTQRQAEET_ 0 0 0 ENST00000561218.5_1_15:91073303-91143644:+|nuORF;nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3 ENST00000561218.5_1_15:91073303-91143644:+|nuORF ENST00000561218.5_1_15:91073303-91143644:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.175048828125 3 367.175743 1098.5054 NaN NaN NaN NaN NaN NaN NaN 95.196 1 89.02 88.52 89.52 -6.1757 0 0 0 0.84737 1 63054 63054 0.96228 0 1 21168 5257 14388 14664 25024 25024 -0.0399129557829383 HTQTHIGTH 9 Unmodified _HTQTHIGTH_ 0 0 0 REV__ENST00000315762.5_9:67793260-67793749:+|nuORF REV__ENST00000315762.5_9:67793260-67793749:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.7828369140625 2 516.254497 1030.49444 0.70972 0.00036639 1.4761 0.00076204 2.1858 0.0011284 516.2535204208095 81.966 0.6057 75.79 75.395 76.001 -6.1757 53 34 2 0 0 0 0.18118 1 53626 53626 19.257 9.9096 1 11470000 + 21169 25465 14389 14665 25025 25025 -0.01958653161887014 HTQWPPDKL 9 Unmodified _HTQWPPDKL_ 0 0 0 ENST00000420329.6_1_15:91186107-91186239:+|nuORF ENST00000420329.6_1_15:91186107-91186239:+|nuORF ENST00000420329.6_1_15:91186107-91186239:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1802978515625 3 374.529458 1120.56654 1.4726 0.00055151 -0.058685 -2.1979E-05 1.4139 0.00052953 374.52995682258427 36.845 0.31256 32.562 32.388 32.701 -4.2835 33 18 3 0 0 0 0.18521 1 21579 21579 7.609 0 1 7213600 21170 13097 14390 14666 25026 25026 0.011082611918027396 HTQWRVNF 8 Unmodified _HTQWRVNF_ 0 0 0 ENST00000302418.4_1_10:32328313-32337463:-|nuORF ENST00000302418.4_1_10:32328313-32337463:-|nuORF ENST00000302418.4_1_10:32328313-32337463:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.1873474121094 3 363.185914 1086.53591 1.8536 0.0006732 1.1077 0.00040231 2.9613 0.0010755 363.18642903365935 21.241 0.3239 18.548 18.358 18.682 -2.693 45 21 3 0 0 0 0.79783 1 11359 11359 5.7319 2.1354 1 10462000 21171 11579 14391 14667 25027 25027 -0.0038947240257130034 HTREHQNL 8 Unmodified _HTREHQNL_ 0 0 0 REV__ENSG00000178665|ENST00000429591|ZNF713 REV__ENSG00000178665|ENST00000429591|ZNF713 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7612915039062 2 517.759946 1033.50534 NaN NaN NaN NaN NaN NaN NaN 53.739 1 53.676 53.176 54.176 -0.063423 0 0 0 0.95973 1 29166 29166 8.5933 0.68312 1 + 21172 22621 14392 14668 25028 25028 -0.010072507876202508 HTRPVQGMGE 10 Unmodified _HTRPVQGMGE_ 0 0 0 REV__nc|ENSG00000141027|O75376-2|NCOR1 REV__nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8507080078125 3 371.181952 1110.52403 -0.10394 -3.8581E-05 0.66169 0.00024561 0.55775 0.00020703 371.1821603172039 37.667 0.36634 37.684 37.515 37.881 0.01704 67 17 5 0 0 0 0.6785 1 20079 20079 2.8433 0.10809 1 55915000 + 21173 20513 14393 14669 25029 25029 -0.026814572080638754 HTRQHEILF 9 Unmodified _HTRQHEILF_ 0 0 0 REV__nc|ENSG00000196387|P52738-2|ZNF140 REV__nc|ENSG00000196387|P52738-2|ZNF140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.815185546875 2 590.814722 1179.61489 0.50162 0.00029637 -0.0029178 -1.7239E-06 0.49871 0.00029464 590.8147844234192 85.429 0.41077 84.927 84.732 85.143 -0.5015 111 39 4 0 0 0 0.2143 1 46781 46781 21.747 3.6117 1 18710000 + 21174 23824 14394 14670 25030 25030 0.03226754831712242 HTRQHQHF 8 Unmodified _HTRQHQHF_ 0 0 0 REV__ENST00000457177.5_1_19:58058015-58058081:-|nuORF REV__ENST00000457177.5_1_19:58058015-58058081:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7681274414062 2 545.768106 1089.52166 NaN NaN NaN NaN NaN NaN NaN 86.226 1 86.226 85.726 86.726 0 0 0 0 0.97444 1 47766 47766 0.79363 0 1 + 21175 27264 14395 14671 25031 25031 -0.019521248308592476 HTRWHSILH 9 Unmodified _HTRWHSILH_ 0 0 0 REV__ENSG00000198040|ENST00000539354|ZNF84 REV__ENSG00000198040|ENST00000539354|ZNF84 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8736572265625 3 396.212463 1185.61556 -0.19317 -7.6535E-05 0.93083 0.00036881 0.73767 0.00029227 396.2119783378594 35.409 0.2742 35.434 35.306 35.581 0.024971 16 12 2 0 0 0 0.19891 1 18715 18715 7.609 0 1 1979700 + 21176 23982 14396 14672 25032 25032 0.030175942714095072 HTSEQSHAFH 10 Unmodified _HTSEQSHAFH_ 0 0 0 ENST00000366882.5_1_6:165806138-165806186:-|nuORF ENST00000366882.5_1_6:165806138-165806186:-|nuORF ENST00000366882.5_1_6:165806138-165806186:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8412780761719 3 394.175854 1179.50573 -0.5763 -0.00022716 -1.4116 -0.00055643 -1.9879 -0.00078359 394.1752880784169 18.153 0.090401 18.153 18.067 18.157 0 8 5 2 0 0 0 0.23986 1 8985 8985 0.69767 0 1 314550 21177 12214 14397 14673 25033 25033 -0.07683875858424472 HTSFLFGLSTS 11 Unmodified _HTSFLFGLSTS_ 0 0 0 ENSG00000111266|ENST00000298573|DUSP16 ENSG00000111266|ENST00000298573|DUSP16 ENSG00000111266|ENST00000298573|DUSP16 MSMS AL20221201_MKP_PDAC_01 4 399.2012634277344 3 399.536389 1195.58734 NaN NaN NaN NaN NaN NaN NaN 51.277 1 45.628 45.128 46.128 -5.649 0 0 0 0.77961 1 32256 32256 7.0371 0.84524 1 21178 2775 14398 14674 25034 25034 -0.0026319321918890637 HTSLFSFDP 9 Unmodified _HTSLFSFDP_ 0 0 0 ENST00000492955.1_1_2:160759962-160760073:-|nuORF ENST00000492955.1_1_2:160759962-160760073:-|nuORF ENST00000492955.1_1_2:160759962-160760073:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.8348083496094 3 350.834547 1049.48181 NaN NaN NaN NaN NaN NaN NaN 29.525 1 29.445 28.945 29.945 -0.080429 0 0 0 0.33856 1 15283 15283 21.537 8.4945 1 21179 14303 14399 14675 25035 25035 -0.040951093448029496 HTSVNKNHI 9 Unmodified _HTSVNKNHI_ 0 0 0 REV__ENSG00000111203|ENST00000228799|ITFG2 REV__ENSG00000111203|ENST00000228799|ITFG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2787475585938 2 525.277972 1048.54139 NaN NaN NaN NaN NaN NaN NaN 18.558 1 18.558 18.058 19.058 0 0 0 0 0.84564 1 9235 9235 2.0598 0 1 + 21180 18737 14400 14676 25036 25036 0.019062063892533843 HTTFVLGCGVC 11 Unmodified _HTTFVLGCGVC_ 0 0 0 ENST00000438060.5_2_19:38709694-38714578:-|nuORF ENST00000438060.5_2_19:38709694-38714578:-|nuORF ENST00000438060.5_2_19:38709694-38714578:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5119018554688 3 379.512422 1135.51544 NaN NaN NaN NaN NaN NaN NaN 27.533 1 27.562 27.062 28.062 0.028664 0 0 0 0.93224 1 14311 14311 2.6312 0 1 21181 13357 14401 14677 25037 25037 -0.0469014716888978 HTTGLYPCSL 10 Unmodified _HTTGLYPCSL_ 0 0 0 nc|ENSG00000167395|O15015-1|ZNF646;ENSG00000167395|ENST00000300850|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 nc|ENSG00000167395|O15015-1|ZNF646 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2691650390625 2 546.263142 1090.51173 0.44439 0.00024275 -0.39194 -0.0002141 0.052455 2.8654E-05 546.2639347134557 52.086 0.39643 52.027 51.814 52.21 -0.058918 48 18 4 0 0 0 0.62068 1 28120 28120 10.074 2.1638 1 11850000 21182 7607 14402 14678 25038 25038 -0.02990493671131844 HTTKVPTTT 9 Unmodified _HTTKVPTTT_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7706298828125 2 493.269281 984.52401 0.45862 0.00022622 -1.0783 -0.00053187 -0.61964 -0.00030565 493.26910681770505 45.03 0.63651 40.178 39.841 40.478 -4.852 105 43 3 0 0 0 0.1685 1 27394 27394 26.268 5.8145 1 76108000 21183 3344 14403 14679 25039 25039 0.031128660635545202 HTVDVEWY 8 Unmodified _HTVDVEWY_ 0 0 0 REV__ENSG00000214891|ENST00000617704|TRIM64C REV__ENSG00000214891|ENST00000617704|TRIM64C MSMS AL20221201_MKP_PDAC_01 4 524.740234375 2 524.740357 1047.46616 NaN NaN NaN NaN NaN NaN NaN 16.088 1 13.531 13.031 14.031 -2.557 0 0 0 0.93587 1 8310 8310 13.508 0 1 + 21184 24327 14404 14680 25040 25040 -0.055673958618626784 HTVGAPHA 8 Unmodified _HTVGAPHA_ 0 0 0 nc|ENSG00000003249|Q9H9R9-3|DBNDD1 nc|ENSG00000003249|Q9H9R9-3|DBNDD1 nc|ENSG00000003249|Q9H9R9-3|DBNDD1 MSMS AL20221201_MKP_PDAC_01 4 395.203369140625 2 395.203744 788.392936 NaN NaN NaN NaN NaN NaN NaN 12.998 1 10.516 10.016 11.016 -2.482 0 0 0 0.97444 1 6583 6583 0.69038 0 1 21185 16006 14405 14681 25041 25041 -0.009724797938133634 HTVGKRFKE 9 Unmodified _HTVGKRFKE_ 0 0 0 ENST00000600588.1_1_19:6593880-6593970:+|nuORF ENST00000600588.1_1_19:6593880-6593970:+|nuORF ENST00000600588.1_1_19:6593880-6593970:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.1750793457031 3 367.876969 1100.60908 NaN NaN NaN NaN NaN NaN NaN 46.916 1 41.836 41.336 42.336 -5.0805 0 0 0 0.77016 1 29059 29059 7.1017 0 1 21186 15800 14406 14682 25042 25042 0.06279656320043614 HTVGLIVQY 9 Unmodified _HTVGLIVQY_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2900390625 2 515.290017 1028.56548 0.37302 0.00019222 0.075707 3.9011E-05 0.44873 0.00023123 515.2900688826505 53.482 0.40093 53.03 52.841 53.242 -0.45173 52 19 4 0 0 0 0.047196 1 28906 28906 46.021 17.534 1 13281000 21187 2649 14407 14683 25043 25043 0.05234046822897653 HTVGLIVQY 9 Unmodified _HTVGLIVQY_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2920532226562 2 515.290017 1028.56548 0.35445 0.00018265 0.70923 0.00036546 1.0637 0.0005481 515.2906276439148 53.128 0.29701 53.065 52.901 53.198 -0.063423 19 14 2 0 0 0 0.03568 1 28790 28790 52.268 10.174 1 2704400 21188 2649 14407 14683 25044 25044 0.05234046822897653 HTVGLIVQY 9 Unmodified _HTVGLIVQY_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2902221679688 2 515.290017 1028.56548 0.86761 0.00044707 -0.076144 -3.9236E-05 0.79147 0.00040784 515.2900676313867 59.473 0.45827 53.358 53.077 53.536 -6.1147 60 24 4 0 0 0 0.008678 2 38213 38075;38213 88.904 40.558 1 61224000 21189 2649 14407 14683 25045;25046 25046 0.05234046822897653 HTVHAPLLAF 10 Unmodified _HTVHAPLLAF_ 0 0 0 ENST00000313349.3_1_2:64862928-64863006:-|nuORF ENST00000313349.3_1_2:64862928-64863006:-|nuORF ENST00000313349.3_1_2:64862928-64863006:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.8482666015625 3 369.209948 1104.60801 2.3031 0.00085032 -1.3799 -0.00050946 0.92323 0.00034087 369.20944319156735 47.665 0.3201 42.431 42.26 42.58 -5.2339 38 18 3 0 0 0 0.23767 1 29568 29568 6.1918 0.89496 1 23945000 21190 11713 14408 14684 25047 25047 0.05989441951146546 HTVNKGVP 8 Unmodified _HTVNKGVP_ 0 0 0 REV__ENST00000585505.1_1_17:41346983-41347127:+|nuORF REV__ENST00000585505.1_1_17:41346983-41347127:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2386779785156 2 426.240327 850.466101 NaN NaN NaN NaN NaN NaN NaN 21.732 1 21.732 21.232 22.232 0 0 0 0 0.96305 1 11018 11018 7.9102 0 1 + 21191 29096 14409 14685 25048 25048 0.03488648928816929 HTVPDVPRE 9 Unmodified _HTVPDVPRE_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.2481079101562 2 525.272355 1048.53016 0.84349 0.00044306 -2.0842 -0.0010948 -1.2407 -0.00065169 525.2710849946257 33.261 0.21661 29.275 29.152 29.369 -3.9853 20 12 3 0 0 0 0.19613 1 19075 19075 12.532 2.3482 1 16144000 + 21192 24387 14410 14686 25049 25049 0.00783384295095857 HTVQTFFSPVN 11 Unmodified _HTVQTFFSPVN_ 0 0 0 ENSG00000142089|ENST00000399808|IFITM3 ENSG00000142089|ENST00000399808|IFITM3 ENSG00000142089|ENST00000399808|IFITM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.817138671875 2 638.81967 1275.62479 -0.057752 -3.6893E-05 0.014184 9.0613E-06 -0.043567 -2.7832E-05 638.8193035223502 53.387 0.24458 53.324 53.157 53.402 -0.063423 19 11 2 0 0 0 0.02135 1 28945 28945 57.108 39.665 1 2079200 21193 5390 14411 14687 25050 25050 -0.002001019535555315 HTVSIFHYQSF 11 Unmodified _HTVSIFHYQSF_ 0 0 0 nc|ENSG00000160588|Q6UWV2-2|MPZL3;ENSG00000160588|ENST00000278949|MPZL3 nc|ENSG00000160588|Q6UWV2-2|MPZL3 nc|ENSG00000160588|Q6UWV2-2|MPZL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.8919982910156 3 455.891055 1364.65134 0.65746 0.00029973 2.3288 0.0010617 2.9863 0.0013614 455.89230636116326 40.791 0.28584 40.789 40.626 40.912 -0.0017929 39 13 4 0 0 0 0.58219 1 21742 21742 6.6235 0 1 8319100 21194 6736 14412 14688 25051 25051 -0.016404130622504454 HTVTLQQRP 9 Unmodified _HTVTLQQRP_ 0 0 0 ENST00000296824.3_1_5:205177-205393:-|nuORF ENST00000296824.3_1_5:205177-205393:-|nuORF ENST00000296824.3_1_5:205177-205393:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.77978515625 2 540.301447 1078.58834 -0.14883 -8.0415E-05 -4.0183 -0.0021711 -4.1671 -0.0022515 540.2993937776016 51.279 0.19965 51.225 51.107 51.306 -0.053871 14 9 2 0 0 0 0.19891 1 27694 27694 11.64 0 1 1787600 21195 11517 14413 14689 25052 25052 0.05219065940377732 HTVWTFVMGC 10 Unmodified _HTVWTFVMGC_ 0 0 0 REV__ENSG00000152467|ENST00000282326|ZSCAN1 REV__ENSG00000152467|ENST00000282326|ZSCAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.1814270019531 3 394.180783 1179.52052 NaN NaN NaN NaN NaN NaN NaN 29.348 1 29.378 28.878 29.878 0.030106 0 0 0 0.83398 1 15310 15310 6.1918 0 1 + 21196 21122 14414 14690 25053 25053 -0.062058433062702534 HTWGNHEFY 9 Unmodified _HTWGNHEFY_ 0 0 0 ENSG00000170222|ENST00000379774|ADPRM;nc|ENSG00000170222|Q3LIE5-3|ADPRM ENSG00000170222|ENST00000379774|ADPRM ENSG00000170222|ENST00000379774|ADPRM MSMS AL20221201_MKP_PDAC_01 4 595.7531127929688 2 595.75433 1189.49411 NaN NaN NaN NaN NaN NaN NaN 45.992 1 41.037 40.537 41.537 -4.9549 0 0 0 0.46232 1 28329 28329 17.113 1.2657 1 21197 7960 14415 14691 25054 25054 -0.09306072881759064 HTWWKRPF 8 Unmodified _HTWWKRPF_ 0 0 0 ENST00000375799.7_1_1:16054831-16055618:+|nuORF ENST00000375799.7_1_1:16054831-16055618:+|nuORF ENST00000375799.7_1_1:16054831-16055618:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3050537109375 2 579.303793 1156.59303 NaN NaN NaN NaN NaN NaN NaN 101.73 1 101.69 101.19 102.19 -0.045853 0 0 0 0.97444 1 56518 56518 2.5775 0.27475 1 21198 12483 14416 14692 25055 25055 0.020999948737880914 HTYRSRTNF 9 Unmodified _HTYRSRTNF_ 0 0 0 ENST00000584021.1_1_11:119290746-119291154:-|nuORF;ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1 ENST00000584021.1_1_11:119290746-119291154:-|nuORF ENST00000584021.1_1_11:119290746-119291154:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5315246582031 3 394.531861 1180.57375 NaN NaN NaN NaN NaN NaN NaN 55.389 1 54.911 54.411 55.411 -0.47798 0 0 0 0.84737 1 30042 30042 0.96228 0.26461 1 21199 6294 14417 14693 25056 25056 -0.009310062077474868 HTYTHTHTH 9 Unmodified _HTYTHTHTH_ 0 0 0 REV__ENST00000399231.7_1_15:52602027-52602213:-|nuORF REV__ENST00000399231.7_1_15:52602027-52602213:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8399658203125 3 378.840695 1133.50025 NaN NaN NaN NaN NaN NaN NaN 24.975 1 24.962 24.462 25.462 -0.012405 0 0 0 0.33856 1 12777 12777 16.149 0 1 + 21200 26581 14418 14694 25057 25057 -0.061155546502504876 HVAEVLEY 8 Unmodified _HVAEVLEY_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2438659667969 2 480.245275 958.475997 0.29395 0.00014117 -0.19622 -9.4232E-05 0.09773 4.6935E-05 480.24508514156724 38.018 0.33784 38.018 37.846 38.184 0 43 16 3 0 0 0 0.41521 1 20324 20324 42.968 0 1 79626000 21201 4549 14419 14695 25058 25058 -0.004902078564896328 HVANTLSVY 9 Unmodified _HVANTLSVY_ 0 0 0 ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2646789550781 2 502.263999 1002.51345 NaN NaN NaN NaN NaN NaN NaN 37.118 1 37.118 36.618 37.618 0 0 0 0 0.14 1 19724 19724 37.974 19.839 1 21202 5450 14420 14696 25059 25059 0.012288834091350509 HVAPANPC 8 Unmodified _HVAPANPC_ 0 0 0 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8770141601562 2 404.692155 807.369758 -0.37048 -0.00014993 -1.0588 -0.0004285 -1.4293 -0.00057843 404.6916197656237 23.137 0.19289 23.137 23.071 23.264 0 12 9 2 0 0 0 8.7369 1 11852 11852 6.3541 0 1 200120 21203 9482 14421 14697 25060 25060 -0.041632419028019285 HVAQEKENEC 10 Unmodified _HVAQEKENEC_ 0 0 0 REV__ENSG00000175336|ENST00000398189|APOF REV__ENSG00000175336|ENST00000398189|APOF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5113220214844 3 396.176755 1185.50844 -0.006307 -2.4987E-06 2.4015 0.00095143 2.3952 0.00094893 396.1777011278602 23.245 0.37295 23.257 22.957 23.33 0.012394 23 18 2 0 0 0 0.23895 1 11732 11732 4.1895 1.1172 1 6724300 + 21204 22865 14422 14698 25061 25061 -0.07689788515767759 HVAQPDSVY 9 Unmodified _HVAQPDSVY_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2455139160156 2 508.245806 1014.47706 -0.1172 -5.9565E-05 -0.68685 -0.00034909 -0.80404 -0.00040865 508.24542331373806 25.023 0.50574 25.023 24.678 25.184 0 88 41 3 0 0 0 0.022193 1 12827 12827 61.357 34.474 1 12568000 21205 1928 14423 14699 25062 25062 -0.029599934875705003 HVAQPDSVY 9 Unmodified _HVAQPDSVY_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2456970214844 2 508.245806 1014.47706 0.60098 0.00030544 1.4437 0.00073376 2.0447 0.0010392 508.2464178139452 28.573 0.627 25.425 24.983 25.61 -3.1482 74 32 4 0 0 0 0.07916 2 15850 15850;15971 37.974 10.728 1 72023000 21206 1928 14423 14699 25063;25064 25063 -0.029599934875705003 HVASTVQTY 9 Unmodified _HVASTVQTY_ 0 0 0 nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-4|ABTB1 nc|ENSG00000114626|Q969K4-2|ABTB1 nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2535705566406 2 503.253631 1004.49271 -0.0057936 -2.9156E-06 -0.44297 -0.00022293 -0.44877 -0.00022584 503.25359903982996 21.108 0.25238 21.108 20.964 21.216 0 96 42 3 0 0 0 0.026094 2 10607 10607;10711 57.471 37.018 1 2956400 21207 3049 14424 14700 25065;25066 25065 -0.009357069705174581 HVASTVQTY 9 Unmodified _HVASTVQTY_ 0 0 0 nc|ENSG00000114626|Q969K4-2|ABTB1;nc|ENSG00000114626|Q969K4-3|ABTB1;ENSG00000114626|ENST00000232744|ABTB1;ENST00000464431.1_1_3:127398812-127399315:+|nuORF;nc|ENSG00000114626|Q969K4-4|ABTB1 nc|ENSG00000114626|Q969K4-2|ABTB1 nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 503.253631 1004.49271 0.28938 0.00014563 -0.84674 -0.00042613 -0.55737 -0.0002805 503.25327657796794 24.196 0.3228 21.369 21.196 21.519 -2.8273 0.13034 -0.00023319 NaN 57.471 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7927400 21208 3049 14424 14700 -0.009357069705174581 HVASVTDSF 9 Unmodified _HVASVTDSF_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7315673828125 2 481.732532 961.45051 -0.2667 -0.00012848 -0.34388 -0.00016566 -0.61059 -0.00029414 481.732426935385 35.145 0.26696 35.145 34.998 35.265 0 34 13 3 0 0 0 0.013472 1 18623 18623 70.716 40.491 1 18080000 21209 4039 14425 14701 25067 25067 -0.031756823789010014 HVASVTDSF 9 Unmodified _HVASVTDSF_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7323608398438 2 481.732532 961.45051 0.49395 0.00023795 -0.59356 -0.00028594 -0.099607 -4.7984E-05 481.7326037666388 40.352 0.41549 35.822 35.572 35.988 -4.5294 45 30 2 0 0 0 0.0086629 1 24106 24106 101.72 48.146 1 40231000 21210 4039 14425 14701 25068 25068 -0.031756823789010014 HVCFTSSHTF 10 Unmodified _HVCFTSSHTF_ 0 0 0 REV__ENSG00000204514|ENST00000435989|ZNF814 REV__ENSG00000204514|ENST00000435989|ZNF814 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1742858886719 3 389.174686 1164.50223 -0.41915 -0.00016312 -0.51239 -0.00019941 -0.93154 -0.00036253 389.17461247657116 35.756 0.26947 35.533 35.372 35.642 -0.2224 50 11 5 0 0 0 0.6606 1 18698 18698 6.6304 2.686 1 156030000 + 21211 24176 14426 14702 25069 25069 -0.07344261956654918 HVCFTSSHTF 10 Unmodified _HVCFTSSHTF_ 0 0 0 REV__ENSG00000204514|ENST00000435989|ZNF814 REV__ENSG00000204514|ENST00000435989|ZNF814 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.175048828125 3 389.174686 1164.50223 0.89512 0.00034836 0.14679 5.7129E-05 1.0419 0.00040549 389.17480114477286 40.37 1.2378 35.84 35.595 36.833 -4.5294 214 81 4 0 0 0 0.66569 1 24259 24259 3.5871 0.74377 1 83299000 + 21212 24176 14426 14702 25070 25070 -0.07344261956654918 HVCSFITHF 9 Unmodified _HVCSFITHF_ 0 0 0 REV__ENST00000346872.7_2_17:37921815-37921971:-|nuORF REV__ENST00000346872.7_2_17:37921815-37921971:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.1755065917969 3 364.176138 1089.50659 NaN NaN NaN NaN NaN NaN NaN 43.495 1 38.73 38.23 39.23 -4.7648 0 0 0 0.7243 1 26431 26431 8.7454 3.8484 1 + 21213 25762 14427 14703 25071 25071 -0.034587527430858245 HVDEQVFLY 9 Unmodified _HVDEQVFLY_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2817993164062 2 575.282389 1148.55022 -0.24936 -0.00014345 -0.89765 -0.0005164 -1.147 -0.00065985 575.283021731714 55.306 0.22016 55.306 55.241 55.461 0 13 9 2 0 0 0 0.14 1 30748 30748 29.082 15.574 1 1424000 21214 10506 14428 14704 25072 25072 -0.01810864764956932 HVDERCPFF 9 Unmodified _HVDERCPFF_ 0 0 0 REV__ENST00000466953.6_1_1:177898995-177928232:-|nuORF REV__ENST00000466953.6_1_1:177898995-177928232:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8436584472656 3 383.843048 1148.50731 1.3368 0.00051312 -0.45554 -0.00017486 0.88126 0.00033827 383.84300379029025 69.086 1.7348 62.91 62.028 63.763 -6.1757 121 97 2 0 0 0 0.41742 1 45473 45473 7.609 2.7119 1 39528000 + 21215 27421 14429 14705 25073 25073 -0.060999580940460874 HVDFCTLFH 9 Unmodified _HVDFCTLFH_ 0 0 0 ENST00000595720.5_1_19:48846576-48867177:-|nuORF;ENSG00000161558|ENST00000293261|TMEM143 ENST00000595720.5_1_19:48846576-48867177:-|nuORF ENST00000595720.5_1_19:48846576-48867177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8418579101562 3 373.507777 1117.5015 -0.98097 -0.0003664 0.93579 0.00034952 -0.045183 -1.6876E-05 373.507914151032 32.81 0.72848 32.81 32.495 33.223 0 91 37 3 0 0 0 0.46577 1 17077 17077 5.7319 0 1 10762000 21216 6795 14430 14706 25074 25074 -0.05255056605710706 HVDFCTLFH 9 Unmodified _HVDFCTLFH_ 0 0 0 ENST00000595720.5_1_19:48846576-48867177:-|nuORF;ENSG00000161558|ENST00000293261|TMEM143 ENST00000595720.5_1_19:48846576-48867177:-|nuORF ENST00000595720.5_1_19:48846576-48867177:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5077514648438 3 373.507777 1117.5015 0.70984 0.00026513 -0.02889 -1.0791E-05 0.68095 0.00025434 373.50782953836324 16.077 0.66396 13.52 13.281 13.945 -2.557 309 112 4 0 0 0 0.46577 1 8300 8300 5.7319 1.8555 1 33450000 21217 6795 14430 14706 25075 25075 -0.05255056605710706 HVDLMFGHF 9 Unmodified _HVDLMFGHF_ 0 0 0 REV__ENSG00000135537|ENST00000368977|AFG1L REV__ENSG00000135537|ENST00000368977|AFG1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1761779785156 3 368.176138 1101.50659 NaN NaN NaN NaN NaN NaN NaN 29.559 1 29.559 29.059 30.059 0 0 0 0 0.81228 1 15315 15315 5.7319 0 1 + 21218 20076 14431 14707 25076 25076 -0.04010752743079138 HVDLMFGHF 9 Unmodified _HVDLMFGHF_ 0 0 0 REV__ENSG00000135537|ENST00000368977|AFG1L REV__ENSG00000135537|ENST00000368977|AFG1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.1768188476562 3 368.176138 1101.50659 -0.56867 -0.00020937 0.55289 0.00020356 -0.015776 -5.8083E-06 368.176352112274 16.914 0.1161 16.915 16.864 16.98 0.0010548 89 36 3 0 0 0 0.57331 1 8361 8361 2.9952 2.9952 1 1588300 + 21219 20076 14431 14707 25077 25077 -0.04010752743079138 HVDLMFGHF 9 Unmodified _HVDLMFGHF_ 0 0 0 REV__ENSG00000135537|ENST00000368977|AFG1L REV__ENSG00000135537|ENST00000368977|AFG1L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.176138 1101.50659 -0.56867 -0.00020937 0.55289 0.00020356 -0.015776 -5.8083E-06 368.176352112274 16.914 0.1161 16.915 16.864 16.98 0.0010548 0.10743 -1.2685E-06 NaN 2.9952 89 36 3 NaN NaN NaN NaN 0 NaN NaN 0 1588300 + 21220 20076 14431 14707 -0.04010752743079138 HVDPENFR 8 Unmodified _HVDPENFR_ 0 0 0 ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09 ENST00000485743.1_1_11:5247788-5248251:-|nuORF ENST00000485743.1_1_11:5247788-5248251:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2446899414062 2 507.243598 1012.47264 NaN NaN NaN NaN NaN NaN NaN 21.898 1 21.898 21.398 22.398 0 0 0 0 0.92941 1 11116 11116 14.838 1.3304 1 + 21221 201 14432 14708 25078 25078 -0.033094579104840705 HVECNNMLND 10 Unmodified _HVECNNMLND_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8302917480469 3 396.83059 1187.46994 0.31036 0.00012316 -0.94906 -0.00037662 -0.6387 -0.00025346 396.8301552645246 24.813 0.33601 21.93 21.758 22.094 -2.8831 65 20 4 0 0 0 0.70951 1 13589 13589 0.77653 0.32202 1 28729000 21222 3202 14433 14709 25079 25079 -0.11629417421954713 HVEEGDIVY 9 Unmodified _HVEEGDIVY_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7494506835938 2 530.750921 1059.48729 -0.22473 -0.00011928 -0.60018 -0.00031855 -0.82491 -0.00043782 530.7503065994118 35.055 0.19009 35.055 34.977 35.167 0 16 9 2 0 0 0 0.016184 1 18532 18532 67.344 37.119 1 3915100 21223 4855 14434 14710 25080 25080 -0.040074305529969934 HVEFLVRH 8 Unmodified _HVEFLVRH_ 0 0 0 REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF;REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2605590820312 2 518.787976 1035.5614 -0.36621 -0.00018999 -1.0552 -0.00054743 -1.4214 -0.00073741 518.7873664647822 61.221 0.24818 60.732 60.694 60.943 -0.48932 16 11 2 0 0 0 8.7369 1 33377 33377 5.7604 0.52976 1 1592300 + 21224 23481;29849 14435 14711 25081 25081 0.04504002119847428 HVENVIKTY 9 Unmodified _HVENVIKTY_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.29833984375 2 551.798206 1101.58186 -0.31746 -0.00017517 -1.0735 -0.00059233 -1.3909 -0.0007675 551.7976605766453 27.33 0.17496 27.33 27.253 27.427 0 14 8 2 0 0 0 0.029718 1 14084 14084 55.503 27.874 1 4495300 21225 6056 14436 14712 25082 25082 0.03513127989003806 HVENVIKTY 9 Unmodified _HVENVIKTY_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7984619140625 2 551.798206 1101.58186 0.96412 0.000532 0.46323 0.00025561 1.4273 0.0007876 551.7982406001695 30.892 0.32736 27.395 27.193 27.52 -3.497 18 14 2 0 0 0 1.0619E-10 1 17462 17462 176.43 97.699 1 33961000 21226 6056 14436 14712 25083 25083 0.03513127989003806 HVESGVSAT 9 Unmodified _HVESGVSAT_ 0 0 0 nc|ENSG00000256463|Q9BXA9-4|SALL3;ENSG00000256463|ENST00000537592|SALL3;nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2224426269531 2 443.716882 885.41921 0.43263 0.00019197 1.6246 0.00072086 2.0572 0.00091282 443.7152410230052 33.736 0.68254 33.765 33.503 34.185 0.028934 46 30 2 0 0 0 0.49272 1 17902 17902 7.9102 0 1 1358400 21227 10800 14437 14713 25084 25084 -0.028082554129923665 HVEWEVDEIFD 11 Unmodified _HVEWEVDEIFD_ 0 0 0 REV__ENSG00000174343|ENST00000310169|CHRNA9 REV__ENSG00000174343|ENST00000310169|CHRNA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 709.3177490234375 2 709.317157 1416.61976 0.35146 0.0002493 -0.76697 -0.00054403 -0.41551 -0.00029473 709.316112274351 73.744 0.21779 73.744 73.638 73.856 0 16 8 3 0 0 0 0.7326 1 41039 41039 1.1933 0.79263 1 470430 + 21228 22787 14438 14714 25085 25085 -0.0718845060687272 HVFDDVESF 9 Unmodified _HVFDDVESF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.744140625 2 547.743096 1093.47164 0.25951 0.00014214 -0.61912 -0.00033912 -0.35962 -0.00019698 547.7426251433606 52.555 1.0164 52.555 52.311 53.327 0 134 46 4 0 0 0 0.0036753 4 29011 29011;29123;29242;29354 123.1 72.241 1 428110000 21229 4289 14439 14715 25086;25087;25088;25089 25086 -0.07135717070036662 HVFDDVESF 9 Unmodified _HVFDDVESF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7440185546875 2 547.743096 1093.47164 0.26361 0.00014439 0.105 5.7513E-05 0.36861 0.00020191 547.7430641594203 53.128 0.44615 52.676 52.476 52.922 -0.45173 58 22 4 0 0 0 0.0090851 2 28693 28693;28803 85.357 49.313 1 23748000 21230 4289 14439 14715 25090;25091 25090 -0.07135717070036662 HVFDDVESF 9 Unmodified _HVFDDVESF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7433471679688 2 547.743096 1093.47164 0.59319 0.00032491 0.28921 0.00015841 0.8824 0.00048333 547.7432383809596 52.79 0.34133 52.726 52.522 52.863 -0.063419 37 16 3 0 0 0 0.026094 1 28614 28614 57.471 37.018 1 6971500 21231 4289 14439 14715 25092 25092 -0.07135717070036662 HVFDDVESF 9 Unmodified _HVFDDVESF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7459106445312 2 547.743096 1093.47164 0.92443 0.00050635 0.092912 5.0892E-05 1.0173 0.00055724 547.7431125752705 60.369 1.0329 54.254 53.902 54.934 -6.1147 159 54 5 0 0 0 0.0077963 4 38682 38682;38811;38941;39232 109.63 58.774 1 394390000 21232 4289 14439 14715 25093;25094;25095;25096 25093 -0.07135717070036662 HVFDDVESF 9 Unmodified _HVFDDVESF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-3|EPS8L1;ENST00000592284.5_1_19:55593146-55593922:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1094.48193359375 1 1094.47892 1093.47164 0.84825 0.00092839 2.3621 0.0025852 3.2103 0.0035136 1094.4822938526727 60.402 0.16471 54.287 54.238 54.402 -6.1147 12 8 2 0 0 0 0.0026776 1 38917 38917 128.37 80.02 1 22692000 21233 4289 14439 14715 25097 25097 -0.07135717070036662 HVFFQVVEF 9 Unmodified _HVFFQVVEF_ 0 0 0 ENSG00000101052|ENST00000373030|IFT52;ENST00000471199.1_1_20:42271018-42275620:+|nuORF ENSG00000101052|ENST00000373030|IFT52 ENSG00000101052|ENST00000373030|IFT52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2978515625 2 576.297842 1150.58113 0.63631 0.0003667 -0.059776 -3.4449E-05 0.57653 0.00033225 576.2975180175661 83.116 0.36488 82.619 82.425 82.789 -0.49751 22 14 3 0 0 0 0.15471 1 45500 45500 38.151 20.016 1 1230700 21234 1906 14440 14716 25098 25098 0.01186333339956036 HVFFQVVEF 9 Unmodified _HVFFQVVEF_ 0 0 0 ENSG00000101052|ENST00000373030|IFT52;ENST00000471199.1_1_20:42271018-42275620:+|nuORF ENSG00000101052|ENST00000373030|IFT52 ENSG00000101052|ENST00000373030|IFT52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2974853515625 2 576.297842 1150.58113 1.507 0.00086848 -0.020858 -1.2021E-05 1.4861 0.00085646 576.2975961699275 82.345 0.47128 82.407 82.22 82.691 0.062004 40 17 3 0 0 0 0.036857 2 45545 45545;45673 67.344 25.249 1 9841000 21235 1906 14440 14716 25099;25100 25099 0.01186333339956036 HVFGAWSTDM 10 Unmodified _HVFGAWSTDM_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1715087890625 3 384.171053 1149.49133 0.57914 0.00022249 -0.11758 -4.5172E-05 0.46156 0.00017732 384.17104905950316 28.398 0.5615 28.336 27.941 28.502 -0.062159 56 21 4 0 0 0 0.67046 2 14743 14533;14743 6.1918 0.89496 1 63286000 + 21236 23085 14441 14717 25101;25102 25102 -0.07743664330928368 HVFGAWSTDM 10 Unmodified _HVFGAWSTDM_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1715087890625 3 384.171053 1149.49133 0.59752 0.00022955 -0.38778 -0.00014897 0.20974 8.0575E-05 384.1710032188939 28.72 0.38343 28.657 28.473 28.856 -0.062159 47 15 4 0 0 0 0.23767 1 14743 14743 6.1918 0.89496 1 57808000 + 21237 23085 14441 14717 25103 25103 -0.07743664330928368 HVFKLEQEEY 10 Unmodified _HVFKLEQEEY_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559459.5_1_15:52543577-52548901:-|nuORF;ENST00000469611.1_1_15:52679971-52688515:-|nuORF;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000137474|Q13402-8|MYO7A;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.826171875 2 661.324785 1320.63502 0.48695 0.00032203 -0.45327 -0.00029976 0.033679 2.2273E-05 661.8257448820993 36.507 0.23895 36.507 36.409 36.648 0 19 11 2 0 0 0 0.13297 1 19392 19392 41.956 26.108 1 3876200 21238 4094;7598;4935 14442 14718 25104 25104 -0.01247539019004762 HVFKLEQEEY 10 Unmodified _HVFKLEQEEY_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559459.5_1_15:52543577-52548901:-|nuORF;ENST00000469611.1_1_15:52679971-52688515:-|nuORF;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000137474|Q13402-8|MYO7A;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2189636230469 3 441.218949 1320.63502 0.80234 0.00035401 -0.90635 -0.0003999 -0.10401 -4.5892E-05 441.21851013739905 36.537 0.20045 36.537 36.409 36.61 0 13 9 2 0 0 0 0.65502 1 19403 19403 10.8 6.61 1 3143600 21239 4094;7598;4935 14442 14718 25105 25105 -0.01247539019004762 HVFKLEQEEY 10 Unmodified _HVFKLEQEEY_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559459.5_1_15:52543577-52548901:-|nuORF;ENST00000469611.1_1_15:52679971-52688515:-|nuORF;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000137474|Q13402-8|MYO7A;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.3256225585938 2 661.324785 1320.63502 1.3815 0.00091363 -0.034059 -2.2524E-05 1.3474 0.0008911 661.3248325985874 41.775 0.29695 37.167 37.014 37.311 -4.6079 42 18 3 0 0 0 0.0032515 1 25109 25109 103.82 72.555 1 8328000 21240 4094;7598;4935 14442 14718 25106 25106 -0.01247539019004762 HVFKLEQEEY 10 Unmodified _HVFKLEQEEY_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559459.5_1_15:52543577-52548901:-|nuORF;ENST00000469611.1_1_15:52679971-52688515:-|nuORF;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000137474|Q13402-8|MYO7A;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2188720703125 3 441.218949 1320.63502 1.7813 0.00078594 -0.78659 -0.00034706 0.9947 0.00043888 441.21824915974923 41.811 0.38138 37.203 37.047 37.428 -4.6079 28 23 2 0 0 0 0.24625 1 25147 25147 32.037 25.414 1 5573100 21241 4094;7598;4935 14442 14718 25107 25107 -0.01247539019004762 HVFLPAMVHH 10 Unmodified _HVFLPAMVHH_ 0 0 0 REV__ENSG00000134917|ENST00000257359|ADAMTS8 REV__ENSG00000134917|ENST00000257359|ADAMTS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3101806640625 2 594.310761 1186.60697 0.218 0.00012956 -0.37834 -0.00022485 -0.16034 -9.5291E-05 594.3106011818574 100.84 0.24141 100.8 100.65 100.9 -0.04216 19 8 3 0 0 0 0.72196 1 56029 56029 0.45834 0.057624 1 2100500 + 21242 20026 14443 14719 25108 25108 0.021129043105929668 HVFLVRNWEKI 11 Unmodified _HVFLVRNWEKI_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.9578247070312 4 360.958215 1439.80375 0.050006 1.805E-05 -0.17344 -6.2606E-05 -0.12344 -4.4556E-05 360.95811094804685 38.504 0.23219 38.522 38.413 38.645 0.01704 26 10 3 0 0 0 0.71259 1 20476 20476 3.0723 1.33 1 7910500 21243 3227 14444 14720 25109 25109 0.10144407405164202 HVFLVRNWEKI 11 Unmodified _HVFLVRNWEKI_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.9588928222656 4 360.958215 1439.80375 1.359 0.00049055 0.61079 0.00022047 1.9698 0.00071101 360.9584333600784 43.552 0.34899 38.787 38.618 38.967 -4.7648 51 21 3 0 0 0 0.73237 1 26442 26442 1.2148 0 1 20212000 21244 3227 14444 14720 25110 25110 0.10144407405164202 HVFPTFVAY 9 Unmodified _HVFPTFVAY_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3;ENST00000491166.1_1_13:114201574-114203850:+|nuORF;ENST00000460039.5_1_13:114200091-114203850:+|nuORF ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7806396484375 2 540.779285 1079.54402 0.37121 0.00020074 3.9817 0.0021532 4.3529 0.002354 541.2835747685509 67.391 0.31686 67.409 67.197 67.514 0.018028 36 15 3 0 0 0 0.07087 1 36973 36973 53.576 30.427 1 4435900 21245 6054 14445 14721 25111 25111 0.0074266179419737455 HVFQTATAKMY 11 Unmodified _HVFQTATAKMY_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MSMS AL20221201_MKP_PDAC_01 4 432.8858337402344 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 21.447 1 18.713 18.213 19.213 -2.7348 0 0 0 0.93923 1 11488 11488 3.0723 0 1 + 21246 20785 14446 14722 25112 25112 -0.002748713086020871 HVGGALVPH 9 Unmodified _HVGGALVPH_ 0 0 0 REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7490539550781 2 443.748319 885.482085 1.2268 0.00054437 -0.3428 -0.00015212 0.88396 0.00039226 443.74811420436436 42.697 0.36427 38.012 37.845 38.209 -4.6846 38 23 2 0 0 0 0.3554 1 25707 25707 14.582 2.0501 1 20994000 + 21247 29548 14447 14723 25113 25113 0.034763551657079006 HVGGALVPH 9 Unmodified _HVGGALVPH_ 0 0 0 REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN REV__nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.748319 885.482085 -0.020171 -8.9506E-06 0.062475 2.7723E-05 0.042305 1.8773E-05 443.74831387434443 38.039 0.30728 37.768 37.638 37.946 -0.27133 -0.12219 0.00022153 NaN 14.582 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2620700 + 21248 29548 14447 14723 0.034763551657079006 HVGPFIDSY 9 Unmodified _HVGPFIDSY_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7503051757812 2 517.750724 1033.4869 0.71082 0.00036803 -0.41621 -0.00021549 0.29461 0.00015253 517.7505704857585 49.618 0.33239 49.618 49.441 49.773 0 25 14 2 0 0 0 0.010712 1 27280 27280 78.445 46.328 1 20274000 21249 7844 14448 14724 25114 25114 -0.028508054821941187 HVGPFIDSY 9 Unmodified _HVGPFIDSY_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.750732421875 2 517.750724 1033.4869 0.75265 0.00038968 0.013739 7.1136E-06 0.76639 0.0003968 517.7508319130435 50.086 0.34063 49.693 49.51 49.851 -0.3923 28 16 2 0 0 0 0.010712 1 26914 26914 78.445 49.958 1 15235000 21250 7844 14448 14724 25115 25115 -0.028508054821941187 HVGPFIDSY 9 Unmodified _HVGPFIDSY_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7506103515625 2 517.750724 1033.4869 0.24487 0.00012678 -0.9695 -0.00050196 -0.72463 -0.00037518 517.7497959294263 56.065 0.4688 50.144 49.907 50.376 -5.9211 49 27 2 0 0 0 0.027803 1 35760 35760 56.541 33.393 1 86915000 21251 7844 14448 14724 25116 25116 -0.028508054821941187 HVGPGPVLH 9 Unmodified _HVGPGPVLH_ 0 0 0 ENST00000569575.5_3_16:667265-675448:+|nuORF ENST00000569575.5_3_16:667265-675448:+|nuORF ENST00000569575.5_3_16:667265-675448:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7574768066406 2 456.756144 911.497735 0.78211 0.00035723 0.13772 6.2906E-05 0.91983 0.00042014 456.7562649857627 18.444 0.23655 15.823 15.709 15.946 -2.6215 37 24 2 0 0 0 0.46577 1 9692 9692 9.3474 3.587 1 1802800 21252 15460 14449 14725 25117 25117 0.03844641682758265 HVGPGVLSM 9 Oxidation (M) _HVGPGVLSM(Oxidation (M))_ HVGPGVLSM(1) HVGPGVLSM(40) 0 0 1 ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7333679199219 2 456.73402 911.453487 0.11941 5.4537E-05 -0.65422 -0.00029881 -0.53482 -0.00024427 456.73358932842234 30.92 0.22237 30.92 30.791 31.013 0 17 10 2 0 0 0 0.068777 1 16093 16093 40.449 15.775 1 1447300 21253 2550 14450 14726 25118 25118 438 -0.005781305257301028 HVGPGVLSM 9 Oxidation (M) _HVGPGVLSM(Oxidation (M))_ HVGPGVLSM(1) HVGPGVLSM(40) 0 0 1 ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7340087890625 2 456.73402 911.453487 0.28676 0.00013097 0.59412 0.00027135 0.88088 0.00040233 456.73415683835645 30.93 0.20091 30.827 30.691 30.891 -0.10269 12 7 2 0 0 0 0.068777 1 16048 16048 40.449 15.775 1 1216200 21254 2550 14450 14726 25119 25119 438 -0.005781305257301028 HVHHLINEY 9 Unmodified _HVHHLINEY_ 0 0 0 ENSG00000155868|ENST00000286317|MED7 ENSG00000155868|ENST00000286317|MED7 ENSG00000155868|ENST00000286317|MED7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8645935058594 3 387.86484 1160.57269 0.4666 0.00018098 -1.5768 -0.00061159 -1.1102 -0.00043061 387.8640889630097 24.989 0.30726 22.106 21.904 22.211 -2.8831 49 25 3 0 0 0 0.078417 1 13565 13565 27.629 23.439 1 17705000 21255 6411 14451 14727 25120 25120 -0.0011722057665792818 HVHHLINEY 9 Unmodified _HVHHLINEY_ 0 0 0 ENSG00000155868|ENST00000286317|MED7 ENSG00000155868|ENST00000286317|MED7 ENSG00000155868|ENST00000286317|MED7 MSMS AL20221201_MKP_PDAC_01 4 581.2947998046875 2 581.293622 1160.57269 NaN NaN NaN NaN NaN NaN NaN 24.921 1 22.037 21.537 22.537 -2.8831 0 0 0 0.08978 1 13600 13600 46.021 30.772 1 21256 6411 14451 14727 25121 25121 -0.0011722057665792818 HVHKFFHH 8 Unmodified _HVHKFFHH_ 0 0 0 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant;ENSG00000147251|ENST00000276202|DOCK11 DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant DOCK11|p.L912Hfs*4|1|0.15|ENSG00000147251|chrX:118608123-118608133|TCTAAGATCAT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7806396484375 2 544.780485 1087.54642 NaN NaN NaN NaN NaN NaN NaN 16.335 1 16.34 15.84 16.84 0.0050564 0 0 0 0.97444 1 8187 8187 0 0 1 21257 240 14452 14728 25122 25122 0.0061455504253444815 HVHNHTLSF 9 Unmodified _HVHNHTLSF_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MSMS AL20221201_MKP_PDAC_01 4 364.5174255371094 3 364.517552 1090.53083 NaN NaN NaN NaN NaN NaN NaN 25.186 1 22.303 21.803 22.803 -2.8831 0 0 0 0.46757 1 13768 13768 16.149 8.5402 1 21258 10164 14453 14729 25123 25123 -0.010817762651868179 HVHPPNFDLNY 11 Unmodified _HVHPPNFDLNY_ 0 0 0 REV__ENSG00000162433|ENST00000327299|AK4 REV__ENSG00000162433|ENST00000327299|AK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.5511779785156 3 451.550921 1351.63093 NaN NaN NaN NaN NaN NaN NaN 28.269 1 28.223 27.723 28.723 -0.046408 0 0 0 0.94148 1 14590 14590 1.4551 0 1 + 21259 21647 14454 14730 25124 25124 -0.030815837220416142 HVHSTSGTFF 10 Unmodified _HVHSTSGTFF_ 0 0 0 REV__ENST00000471997.1_1_2:147346307-147346439:+|nuORF REV__ENST00000471997.1_1_2:147346307-147346439:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1797485351562 3 373.845446 1118.51451 -0.29185 -0.00010911 -0.2001 -7.4808E-05 -0.49195 -0.00018391 374.17978507937795 41.811 0.50919 41.504 41.308 41.817 -0.30682 30 24 2 0 0 0 0.68844 1 22225 22225 4.1895 4.1895 1 13403000 + 21260 27508 14455 14731 25125 25125 -0.040009022219464896 HVICLAEEF 9 Carbamidomethyl (C) _HVIC(Carbamidomethyl (C))LAEEF_ HVIC(1)LAEEF HVIC(47)LAEEF 0 1 0 ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;ENST00000566424.1_1_16:29468907-29469081:+|nuORF;ENST00000395400.4_1_16:29468907-29472819:+|nuORF;nc|ENSG00000181625|Q9BQ83-2|SLX1A;ENST00000561824.5_1_16:30205929-30212162:+|nuORF ENSG00000181625|ENST00000330181|SLX1B ENSG00000181625|ENST00000330181|SLX1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2716064453125 2 559.270967 1116.52738 0.45506 0.0002545 0.60667 0.0003393 1.0617 0.0005938 559.2713743878943 59.035 0.26734 59.035 58.902 59.169 0 21 11 2 0 0 0 0.045537 1 32901 32901 46.921 31.074 1 4611500 21261 4379 14456 14732 25126 25126 444 -0.026222071540814795 HVICLAEEF 9 Carbamidomethyl (C) _HVIC(Carbamidomethyl (C))LAEEF_ HVIC(1)LAEEF HVIC(40)LAEEF 0 1 0 ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;ENST00000566424.1_1_16:29468907-29469081:+|nuORF;ENST00000395400.4_1_16:29468907-29472819:+|nuORF;nc|ENSG00000181625|Q9BQ83-2|SLX1A;ENST00000561824.5_1_16:30205929-30212162:+|nuORF ENSG00000181625|ENST00000330181|SLX1B ENSG00000181625|ENST00000330181|SLX1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2708129882812 2 559.270967 1116.52738 0.51423 0.00028759 0.065746 3.677E-05 0.57998 0.00032436 559.270852291672 59.542 0.25299 59.051 58.898 59.151 -0.49079 20 11 2 0 0 0 0.068777 1 32396 32396 40.449 31.101 1 1902200 21262 4379 14456 14732 25127 25127 444 -0.026222071540814795 HVIDVKFLY 9 Unmodified _HVIDVKFLY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3212890625 2 567.321317 1132.62808 0.41225 0.00023388 -0.49399 -0.00028025 -0.081735 -4.637E-05 567.3211778697213 59.853 0.33418 59.362 59.193 59.527 -0.49079 56 16 5 0 0 0 0.024189 2 32544 32544;32643 60.074 38.327 1 26968000 21263 7694;14986 14457 14733 25128;25129 25128 0.06707192891099112 HVIDVKFLY 9 Unmodified _HVIDVKFLY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3218383789062 2 567.321317 1132.62808 0.4758 0.00026993 -0.17784 -0.00010089 0.29797 0.00016904 567.32118416513 59.466 0.58302 59.413 59.233 59.816 -0.053062 87 29 5 0 0 0 0.010362 3 32342 32342;32445;32553 86.332 59.448 1 126960000 21264 7694;14986 14457 14733 25130;25131;25132 25130 0.06707192891099112 HVIDVKFLY 9 Unmodified _HVIDVKFLY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5499572753906 3 378.54997 1132.62808 0.27001 0.00010221 0.22379 8.4714E-05 0.49379 0.00018693 378.5497282422784 59.463 0.18727 59.41 59.312 59.499 -0.053062 12 9 2 0 0 0 0.11784 1 32406 32406 31.268 18.226 1 4304700 21265 7694;14986 14457 14733 25133 25133 0.06707192891099112 HVIDVKFLY 9 Unmodified _HVIDVKFLY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3221435546875 2 567.321317 1132.62808 1.177 0.00066775 0.48996 0.00027796 1.667 0.00094571 567.3215724903384 89.966 0.53761 83.79 83.47 84.008 -6.1757 74 29 3 0 0 0 0.030212 2 59431 59312;59431 60.074 34.838 1 365530000 21266 7694;14986 14457 14733 25134;25135 25135 0.06707192891099112 HVIDVKFLY 9 Unmodified _HVIDVKFLY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5502624511719 3 378.54997 1132.62808 1.5172 0.00057433 0.10666 4.0375E-05 1.6239 0.00061471 378.5499514183861 89.949 0.35416 83.774 83.58 83.934 -6.1757 36 19 2 0 0 0 0.091924 2 59448 59316;59448 34.932 18.783 1 30208000 21267 7694;14986 14457 14733 25136;25137 25137 0.06707192891099112 HVIEKMHHV 9 Unmodified _HVIEKMHHV_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.202880859375 3 377.202687 1128.58623 0.66452 0.00025066 -1.7277 -0.00065168 -1.0631 -0.00040102 377.53593865567336 15.176 0.20285 12.649 12.593 12.796 -2.5273 42 30 2 0 0 0 0.087258 1 7752 7752 32.786 23.242 1 2579800 21268 3102 14458 14734 25138 25138 0.027083139309070248 HVIENSNAF 9 Unmodified _HVIENSNAF_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2525024414062 2 515.751256 1029.48796 -0.24883 -0.00012833 -0.68376 -0.00035265 -0.93259 -0.00048098 515.7508087455193 29.589 0.31038 29.589 29.432 29.742 0 48 19 3 0 0 0 0.013041 2 15298 15298;15404 71.922 37.82 1 28458000 21269 6809 14459 14735 25139;25140 25139 -0.025605911132970505 HVIENSNAF 9 Unmodified _HVIENSNAF_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7517700195312 2 515.751256 1029.48796 1.2553 0.0006474 -0.34167 -0.00017622 0.91359 0.00047118 515.751144699068 34.036 0.5945 30.051 29.765 30.359 -3.9853 98 32 4 0 0 0 0.013041 2 19499 19499;19620 71.922 37.82 1 121630000 21270 6809 14459 14735 25141;25142 25141 -0.025605911132970505 HVIQALESL 9 Unmodified _HVIQALESL_ 0 0 0 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2894897460938 2 505.287474 1008.5604 0.70933 0.00035842 2.2397 0.0011317 2.949 0.0014901 505.2884883429339 57.062 0.21233 57.062 56.922 57.135 0 14 8 2 0 0 0 0.1773 1 31765 31765 25.399 13.759 1 1074100 21271 3313 14460 14736 25143 25143 0.056457429602687625 HVIQALESL 9 Unmodified _HVIQALESL_ 0 0 0 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7887878417969 2 505.287474 1008.5604 0.041316 2.0877E-05 0.57807 0.00029209 0.61938 0.00031297 505.2878817987708 57.454 0.18668 56.964 56.88 57.066 -0.48974 9 8 2 0 0 0 0.087258 1 31239 31239 36.044 22.536 1 1173600 21272 3313 14460 14736 25144 25144 0.056457429602687625 HVIQLLFFYF 10 Unmodified _HVIQLLFFYF_ 0 0 0 ENSG00000181698|ENST00000641665|OR5T1 ENSG00000181698|ENST00000641665|OR5T1 ENSG00000181698|ENST00000641665|OR5T1 MSMS AL20221201_MKP_PDAC_01 4 442.9144287109375 3 442.91302 1325.71723 NaN NaN NaN NaN NaN NaN NaN 93.211 1 87.035 86.535 87.535 -6.1757 0 0 0 0.91954 1 61683 61683 7.1017 2.3858 1 21273 8989 14461 14737 25145 25145 0.06740027850605657 HVISWEDLRK 10 Unmodified _HVISWEDLRK_ 0 0 0 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2350769042969 3 428.234933 1281.68297 0.22375 9.5819E-05 -0.064164 -2.7477E-05 0.15959 6.8342E-05 428.23475087350084 40.035 0.21426 39.738 39.629 39.843 -0.29716 15 9 2 0 0 0 0.61603 1 21198 21198 10.315 6.7282 1 2410600 21274 7007 14462 14738 25146 25146 0.05339579691690233 HVISWEDLRK 10 Unmodified _HVISWEDLRK_ 0 0 0 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2;nc|ENSG00000163513|P37173-2|TGFBR2 TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant TGFBR2|p.L361Tfs*26|1|0.19|ENSG00000163513|chr3:30672263-30672266|CCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2344665527344 3 428.234933 1281.68297 0.38959 0.00016684 -0.37526 -0.0001607 0.014332 6.1374E-06 428.23474060483943 39.681 0.22696 39.686 39.543 39.77 0.0050583 20 10 2 0 0 0 0.1887 1 21139 21139 35.08 24.181 1 4298300 21275 7007 14462 14738 25147 25147 0.05339579691690233 HVIVSWLV 8 Unmodified _HVIVSWLV_ 0 0 0 ENST00000258341.4_1_1:183114077-183114230:+|nuORF ENST00000258341.4_1_1:183114077-183114230:+|nuORF ENST00000258341.4_1_1:183114077-183114230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7855529785156 2 476.78437 951.554188 1.0756 0.00051283 0.46218 0.00022036 1.5378 0.0007332 476.784640848584 89.96 0.35416 83.785 83.58 83.934 -6.1757 32 19 2 0 0 0 0.44122 1 59365 59365 40.449 8.3316 1 15507000 21276 11201 14463 14739 25148 25148 0.07647269519418387 HVKGKRKQ 8 Unmodified _HVKGKRKQ_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MSMS AL20221201_MKP_PDAC_01 4 490.8110656738281 2 490.809242 979.603932 NaN NaN NaN NaN NaN NaN NaN 107.18 1 101.01 100.51 101.51 -6.1757 0 0 0 0.97444 1 71706 71706 0.69038 0.088878 1 + 21277 17379 14464 14740 25149 25149 0.11331397248079611 HVKYFYRHWFE 11 Unmodified _HVKYFYRHWFE_ 0 0 0 REV__nc|ENSG00000160058|Q9NW68-9|BSDC1 REV__nc|ENSG00000160058|Q9NW68-9|BSDC1 MSMS AL20221201_MKP_PDAC_01 4 806.396240234375 2 806.39641 1610.77827 NaN NaN NaN NaN NaN NaN NaN 92.542 1 86.366 85.866 86.866 -6.1757 0 0 0 0.93933 1 61203 61203 2.9952 1.5133 1 + 21278 21510 14465 14741 25150 25150 -0.0026906711723313492 HVLCMAAETY 10 Unmodified _HVLCMAAETY_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7937622070312 2 569.257002 1136.49945 0.40661 0.00023147 -2.0895 -0.0011895 -1.6829 -0.00095799 569.2556877786901 59.862 0.31062 59.371 59.234 59.545 -0.49079 26 15 2 0 0 0 0.22993 1 32531 32531 12.532 5.2423 1 4716500 + 21279 29555 14466 14742 25151 25151 -0.06333853405817536 HVLDTLIQL 9 Unmodified _HVLDTLIQL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.311279296875 2 526.310949 1050.60735 NaN NaN NaN NaN NaN NaN NaN 76.2 1 75.72 75.22 76.22 -0.47945 0 0 0 0.27852 1 41713 41713 36.044 12.896 1 21280 1444 14467 14743 25152 25152 0.08406602511445271 HVLEEMTRS 9 Unmodified _HVLEEMTRS_ 0 0 0 REV__nc|ENSG00000092978|Q9NW75-2|GPATCH2 REV__nc|ENSG00000092978|Q9NW75-2|GPATCH2 MSMS AL20221201_MKP_PDAC_01 4 551.2711181640625 2 551.271498 1100.52844 NaN NaN NaN NaN NaN NaN NaN 24.699 1 21.816 21.316 22.316 -2.8831 0 0 0 0.41144 1 13463 13463 14.838 5.4551 1 + 21281 17921 14468 14744 25153 25153 -0.017799927851683606 HVLGAHLVL 9 Unmodified _HVLGAHLVL_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7951049804688 2 479.795269 957.575986 0.9384 0.00045024 -0.21199 -0.00010171 0.72641 0.00034853 479.79500826881184 50.046 0.36147 49.653 49.51 49.872 -0.3923 38 17 3 0 0 0 0.1492 1 26900 26900 28.173 0 1 7094400 21282 10061 14469 14745 25154 25154 0.09550074267974651 HVLGLHGGP 9 Unmodified _HVLGLHGGP_ 0 0 0 ENST00000542466.2_1_12:58120098-58120972:+|nuORF ENST00000542466.2_1_12:58120098-58120972:+|nuORF ENST00000542466.2_1_12:58120098-58120972:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7486877441406 2 443.748319 885.482085 1.2268 0.00054437 -0.3428 -0.00015212 0.88396 0.00039226 443.74811420436436 42.697 0.36427 38.012 37.845 38.209 -4.6846 38 23 2 0 0 0 0.3554 1 25831 25831 14.582 3.4672 1 20994000 21283 15060 14470 14746 25155 25155 0.03476355165719269 HVLQLTNHQV 10 Unmodified _HVLQLTNHQV_ 0 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MSMS AL20221201_MKP_PDAC_01 4 594.8270263671875 2 594.827829 1187.64111 NaN NaN NaN NaN NaN NaN NaN 33.993 1 30.008 29.508 30.508 -3.9853 0 0 0 0.83398 1 19550 19550 10.824 2.0785 1 + 21284 155 14471 14747 25156 25156 0.0547902400314797 HVLRQFWFC 9 Unmodified _HVLRQFWFC_ 0 0 0 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 MSMS AL20221201_MKP_PDAC_01 4 412.196533203125 3 412.542933 1234.60697 NaN NaN NaN NaN NaN NaN NaN 15.912 1 13.355 12.855 13.855 -2.557 0 0 0 0.84369 1 8206 8206 1.1933 0 1 21285 8342 14472 14748 25157 25157 -0.0009509568940302415 HVLRSWSSW 9 Unmodified _HVLRSWSSW_ 0 0 0 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2953491210938 2 579.296165 1156.57778 0.26713 0.00015475 -0.2425 -0.00014048 0.024632 1.4269E-05 579.2960457967696 81.657 0.33555 81.657 81.465 81.801 0 40 17 3 0 0 0 0.58466 1 45281 45281 2.3027 0.24298 1 905040 + 21286 29736 14473 14749 25158 25158 0.00575083285934852 HVLRSWSSW 9 Unmodified _HVLRSWSSW_ 0 0 0 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 579.296165 1156.57778 0.26713 0.00015475 -0.2425 -0.00014048 0.024632 1.4269E-05 579.2960457967696 81.657 0.33555 81.657 81.465 81.801 0 -0.031025 -0.00035679 NaN 2.3027 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 905040 + 21287 29736 14473 14749 0.00575083285934852 HVLRSWSSW 9 Unmodified _HVLRSWSSW_ 0 0 0 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 REV__nc|ENSG00000161652|Q6UXV1-2|IZUMO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 579.296165 1156.57778 0.68248 0.00039536 1.1351 0.00065758 1.8176 0.0010529 579.296962497752 82.215 0.36674 81.719 81.528 81.895 -0.4952 0.031025 0.0012393 NaN 2.3027 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 534940 + 21288 29736 14473 14749 0.00575083285934852 HVLSVIFYML 10 Unmodified _HVLSVIFYML_ 0 0 0 REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8947143554688 3 407.89486 1220.66275 0.049167 2.0055E-05 0.12871 5.2502E-05 0.17788 7.2557E-05 407.89495655609517 79.295 0.36476 79.349 79.185 79.55 0.05497 38 13 4 0 0 0 0.18088 1 43794 43794 23.79 18.742 1 26414000 + 21289 27787 14474 14750 25159 25159 0.061246927075444546 HVLSVIFYML 10 Unmodified _HVLSVIFYML_ 0 0 0 REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF REV__ENST00000485820.1_1_11:66052175-66053099:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3379516601562 2 611.338652 1220.66275 0.51076 0.00031225 -0.11071 -6.7681E-05 0.40005 0.00024457 611.338495953452 79.288 0.21179 79.343 79.257 79.468 0.05497 19 7 3 0 0 0 0.2829 1 43821 43821 28.487 18.413 1 4003000 + 21290 27787 14474 14750 25160 25160 0.061246927075444546 HVMAFFFSL 9 Unmodified _HVMAFFFSL_ 0 0 0 REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2 REV__nc|ENSG00000157214|Q8NFT2-3|STEAP2 MSMS AL20221201_MKP_PDAC_01 4 366.8542785644531 3 366.852884 1097.53682 NaN NaN NaN NaN NaN NaN NaN 18.729 1 16.108 15.608 16.608 -2.6215 0 0 0 0.81228 1 9883 9883 5.7319 0 1 + 21291 21372 14475 14751 25161 25161 -0.008043940778861725 HVMDLDAY 8 Unmodified _HVMDLDAY_ 0 0 0 REV__nc|ENSG00000198053|P78324-4|SIRPA REV__nc|ENSG00000198053|P78324-4|SIRPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.5517272949219 2 482.21566 962.416767 -0.13013 -6.2752E-05 0.12631 6.0907E-05 -0.0038257 -1.8448E-06 482.2156402774298 23.602 0.40361 23.602 23.469 23.873 0 36 20 3 0 0 0 0.5953 2 11999 11999;12095 26.341 11.76 1 3686300 + 21292 23984 14476 14752 25162;25163 25162 -0.06594427142329096 HVMDLDAY 8 Unmodified _HVMDLDAY_ 0 0 0 REV__nc|ENSG00000198053|P78324-4|SIRPA REV__nc|ENSG00000198053|P78324-4|SIRPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.5517272949219 2 482.21566 962.416767 -0.13013 -6.2752E-05 0.12631 6.0907E-05 -0.0038257 -1.8448E-06 482.2156402774298 23.602 0.40361 23.602 23.469 23.873 0 36 20 3 0 0 0 8.7369 1 11999 11999 26.341 11.76 1 3686300 + 21293 23984 14476 14752 25164 25164 -0.06594427142329096 HVMFCLGLI 9 Unmodified _HVMFCLGLI_ 0 0 0 REV__ENST00000367603.7_2_6:143090851-143090932:-|nuORF REV__ENST00000367603.7_2_6:143090851-143090932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7708740234375 2 516.772091 1031.52963 0.29995 0.00015501 -1.0923 -0.00056447 -0.79235 -0.00040946 516.7714777725513 63.258 0.28815 63.258 63.073 63.361 0 26 11 3 0 0 0 0.46577 1 35251 35251 9.3474 2.9933 1 2338200 + 21294 25994 14477 14753 25165 25165 0.01512550050028949 HVMHPPPP 8 Unmodified _HVMHPPPP_ 0 0 0 REV__ENSG00000204612|ENST00000376708|FOXB2 REV__ENSG00000204612|ENST00000376708|FOXB2 MSMS AL20221201_MKP_PDAC_01 4 456.2294616699219 2 456.231448 910.448342 NaN NaN NaN NaN NaN NaN NaN 46.634 1 41.554 41.054 42.054 -5.0805 0 0 0 0.9185 1 28851 28851 17.087 0.14425 1 + 21295 24188 14478 14754 25166 25166 -0.010463895977068205 HVMKILGG 8 Unmodified _HVMKILGG_ 0 0 0 REV__ENST00000585722.1_1_19:11456145-11456331:-|nuORF REV__ENST00000585722.1_1_19:11456145-11456331:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.7501525878906 2 427.749473 853.484393 NaN NaN NaN NaN NaN NaN NaN 2.6918 1 2.6198 2.1198 3.1198 -0.072029 0 0 0 0.97444 1 1330 1330 0 0 1 + 21296 18431 14479 14755 25167 25167 0.05179067579183538 HVMNFTNWAI 10 Unmodified _HVMNFTNWAI_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MSMS AL20221201_MKP_PDAC_01 4 411.5340270996094 3 411.534214 1231.58081 NaN NaN NaN NaN NaN NaN NaN 46.495 1 41.414 40.914 41.914 -5.0805 0 0 0 0.93038 1 28731 28731 6.6304 2.4409 1 21297 9940 14480 14756 25168 25168 -0.025714096515230267 HVNAVCHLSL 10 Unmodified _HVNAVCHLSL_ 0 0 0 ENST00000506426.1_1_4:184626141-184627956:+|nuORF ENST00000506426.1_1_4:184626141-184627956:+|nuORF ENST00000506426.1_1_4:184626141-184627956:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1939392089844 3 364.858809 1091.5546 1.3395 0.00048873 0.82812 0.00030215 2.1676 0.00079087 364.8592137116955 33.15 0.43714 29.294 29.061 29.498 -3.8562 38 27 2 0 0 0 0.60623 1 18980 18980 6.1918 0.78914 1 15451000 21298 14522 14481 14757 25169 25169 0.012483211769676927 HVNDLFLQY 9 Unmodified _HVNDLFLQY_ 0 0 0 nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7916259765625 2 574.790381 1147.56621 0.50419 0.00028981 2.1182 0.0012175 2.6224 0.0015073 574.7911239573367 63.656 0.32592 63.17 62.969 63.295 -0.48617 29 14 3 0 0 0 0.15471 2 34711 34699;34711 27.629 17.555 1 2291700 21299 2145 14482 14758 25170;25171 25171 -0.001671585280519139 HVNEEVTEF 9 Unmodified _HVNEEVTEF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.25390625 2 552.253828 1102.4931 0.3279 0.00018108 0.23074 0.00012743 0.55864 0.00030851 552.2538620131628 35.808 0.416 35.808 35.594 36.01 0 55 20 4 0 0 0 0.15471 1 18881 18881 27.629 0 1 37379000 21300 4099 14483 14759 25172 25172 -0.05404332041325688 HVNGIVQKY 9 Unmodified _HVNGIVQKY_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2936401367188 2 529.293091 1056.57163 -0.028961 -1.5329E-05 0.37786 0.0002 0.3489 0.00018467 529.2933852371223 22.549 0.18875 22.549 22.423 22.611 0 19 8 3 0 0 0 0.13231 1 11468 11468 39.957 23.015 1 1197700 21301 2533 14484 14760 25173 25173 0.04560565054430299 HVNGIVQKY 9 Unmodified _HVNGIVQKY_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.293212890625 2 529.293091 1056.57163 -0.19242 -0.00010185 -0.19143 -0.00010132 -0.38386 -0.00020317 529.2929306124722 22.486 0.15994 22.509 22.442 22.602 0.022896 10 6 2 0 0 0 0.43515 1 11459 11459 15.847 7.937 1 820450 21302 2533 14484 14760 25174 25174 0.04560565054430299 HVNGIVQKY 9 Unmodified _HVNGIVQKY_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2937622070312 2 529.293091 1056.57163 -0.032902 -1.7415E-05 0.38492 0.00020374 0.35202 0.00018632 529.2932255197419 25.316 0.38551 22.433 22.24 22.625 -2.8831 54 26 3 0 0 0 0.013609 2 13879 13760;13879 88.904 50.752 1 14862000 21303 2533 14484 14760 25175;25176 25176 0.04560565054430299 HVNPSGQESEL 11 Unmodified _HVNPSGQESEL_ 0 0 0 REV__ENSG00000118922|ENST00000703967|KLF12 REV__ENSG00000118922|ENST00000703967|KLF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5234680175781 3 399.52292 1195.54693 -0.16193 -6.4696E-05 0.6882 0.00027495 0.52626 0.00021025 399.5231049670506 55.906 0.19969 55.428 55.32 55.52 -0.47798 15 9 2 0 0 0 0.71341 1 30341 30341 1.2148 0 1 2518300 + 21304 19173 14485 14761 25177 25177 -0.04302159609596856 HVNPSPHL 8 Unmodified _HVNPSPHL_ 0 0 0 REV__ENST00000361722.7_1_17:45788235-45788682:+|nuORF REV__ENST00000361722.7_1_17:45788235-45788682:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7376708984375 2 450.737951 899.46135 NaN NaN NaN NaN NaN NaN NaN 52.583 1 52.583 52.083 53.083 0 0 0 0 0.9706 1 29105 29105 6.3541 0 1 + 21305 25934 14486 14762 25178 25178 0.007597647860393408 HVNPVQALSEF 11 Unmodified _HVNPVQALSEF_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MSMS AL20221201_MKP_PDAC_01 4 620.8212890625 2 620.81967 1239.62479 NaN NaN NaN NaN NaN NaN NaN 87.858 1 81.682 81.182 82.182 -6.1757 0 0 0 0.13551 1 57946 57946 47.594 28.337 1 21306 671 14487 14763 25179 25179 0.014558980464244087 HVNRAACYF 9 Unmodified _HVNRAACYF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion;ENST00000486331.1_1_22:41716661-41728273:+|nuORF ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.75537109375 2 540.755818 1079.49708 0.20892 0.00011297 -0.92564 -0.00050054 -0.71672 -0.00038757 540.7553455123283 65.681 0.39047 65.681 65.419 65.81 0 29 16 2 0 0 0 0.46577 1 36598 36598 9.3474 2.9933 1 2953700 21307 1817 14488 14764 25180 25180 -0.039485210286329675 HVNRAACYF 9 Unmodified _HVNRAACYF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion;ENST00000486331.1_1_22:41716661-41728273:+|nuORF ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.755818 1079.49708 0.20892 0.00011297 -0.92564 -0.00050054 -0.71672 -0.00038757 540.7553455123283 65.681 0.39047 65.681 65.419 65.81 0 -0.069642 -0.00021722 NaN 9.3474 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2953700 21308 1817 14488 14764 -0.039485210286329675 HVNRAACYF 9 Unmodified _HVNRAACYF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion;ENST00000486331.1_1_22:41716661-41728273:+|nuORF ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.755818 1079.49708 0.86185 0.00046605 1.267 0.00068512 2.1288 0.0011512 540.7556191316945 65.811 0.14358 65.82 65.747 65.891 0.0095596 0.069642 0.0021541 NaN 9.3474 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 998790 21309 1817 14488 14764 -0.039485210286329675 HVNWPWRG 8 Unmodified _HVNWPWRG_ 0 0 0 ENST00000360416.7_1_17:8378430-8378556:-|nuORF ENST00000360416.7_1_17:8378430-8378556:-|nuORF ENST00000360416.7_1_17:8378430-8378556:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1795654296875 3 351.178871 1050.51478 NaN NaN NaN NaN NaN NaN NaN 94.585 1 94.165 93.665 94.665 -0.42044 0 0 0 0.97444 1 51674 51674 0.40072 0 1 21310 12167 14489 14765 25181 25181 -0.008454377114503586 HVNWVVSEL 9 Unmodified _HVNWVVSEL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7871704101562 2 541.785099 1081.55564 0.22868 0.0001239 1.051 0.00056939 1.2796 0.00069329 541.7853250539574 63.768 0.26646 63.768 63.612 63.879 0 18 10 2 0 0 0 0.095405 1 35547 35547 34.102 17.16 1 1343600 21311 9907 14490 14766 25182 25182 0.01812858817538654 HVNWVVSEL 9 Unmodified _HVNWVVSEL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7857055664062 2 541.785099 1081.55564 0.45224 0.00024502 1.2567 0.00068088 1.709 0.0009259 541.785514382762 64.198 0.33252 63.713 63.511 63.844 -0.48512 39 15 3 0 0 0 0.019303 2 35059 34959;35059 64.236 37.353 1 7609800 21312 9907 14490 14766 25183;25184 25184 0.01812858817538654 HVNWVVSEL 9 Unmodified _HVNWVVSEL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.785099 1081.55564 0.85522 0.00046335 -0.012168 -6.5923E-06 0.84305 0.00045675 541.7852988613629 63.748 0.17532 63.738 63.649 63.825 -0.010532 -0.0020073 -0.0012799 NaN 64.236 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 817980 21313 9907 14490 14766 0.01812858817538654 HVPDVVLITF 10 Unmodified _HVPDVVLITF_ 0 0 0 REV__ENSG00000203870|ENST00000369529|SMIM9 REV__ENSG00000203870|ENST00000369529|SMIM9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.553955078125 3 380.553492 1138.63865 NaN NaN NaN NaN NaN NaN NaN 27.581 1 27.534 27.034 28.034 -0.046408 0 0 0 0.91523 1 14218 14218 3.8763 0.88109 1 + 21314 24124 14491 14767 25185 25185 0.07487175545520586 HVPPWALGP 9 Unmodified _HVPPWALGP_ 0 0 0 REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B REV__nc|ENSG00000215187|A8MTA8-2|CIMIP2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.264892578125 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 21.769 1 21.769 21.269 22.269 0 0 0 0 0.70111 1 11040 11040 9.3474 0.75416 1 + 21315 24336 14492 14768 25186 25186 0.03077812342553443 HVPSYGSPCSF 11 Unmodified _HVPSYGSPCSF_ 0 0 0 REV__ENSG00000197629|ENST00000361050|MPEG1 REV__ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1760559082031 3 394.174574 1179.50189 0.53835 0.00021221 0.79464 0.00031323 1.333 0.00052543 394.1750679133207 27.613 0.18616 27.567 27.495 27.681 -0.046408 12 8 2 0 0 0 0.6249 1 14241 14241 5.0475 0 1 4508600 + 21316 23949 14493 14769 25187 25187 -0.08067681676516258 HVPVLSVTL 9 Unmodified _HVPVLSVTL_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;ENST00000470139.1_2_1:43891781-43893406:+|nuORF nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.7666320800781 2 482.794935 963.575317 0.64361 0.00031073 0.11307 5.4591E-05 0.75668 0.00036532 482.79509095375516 45.541 0.17757 40.586 40.464 40.641 -4.9549 19 11 2 0 0 0 0.21242 1 28002 28002 5.2307 0.90143 1 17870000 21317 10061 14494 14770 25188 25188 0.09207234828284072 HVPVPDDMMF 10 Unmodified _HVPVPDDMMF_ 0 0 0 REV__ENST00000486520.1_1_21:48081621-48084236:+|nuORF REV__ENST00000486520.1_1_21:48081621-48084236:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5113220214844 3 396.51231 1186.5151 NaN NaN NaN NaN NaN NaN NaN 23.029 1 23.041 22.541 23.541 0.012396 0 0 0 0.96627 1 11732 11732 2.086 0 1 + 21318 21536 14495 14771 25189 25189 -0.07069566888799272 HVQCDCTDSFN 11 Unmodified _HVQCDCTDSFN_ 0 0 0 ENST00000565010.1_1_16:602435-603513:+|nuORF;ENSG00000103326|ENST00000219611|CAPN15 ENST00000565010.1_1_16:602435-603513:+|nuORF ENST00000565010.1_1_16:602435-603513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.738525390625 2 634.737162 1267.45977 0.095961 6.091E-05 1.3657 0.00086688 1.4617 0.00092779 634.737871208739 87.365 0.38374 87.365 87.17 87.554 0 54 17 5 0 0 0 0.74429 1 48324 48324 0 0 1 2016100 21319 2127 14496 14772 25190 25190 -0.16326025147191103 HVQELESYI 9 Unmodified _HVQELESYI_ 0 0 0 ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5 ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.1897277832031 3 373.188989 1116.54514 NaN NaN NaN NaN NaN NaN NaN 22.137 1 22.16 21.66 22.66 0.022896 0 0 0 0.82015 1 11253 11253 2.9952 0 1 21320 14315 14497 14773 25191 25191 -0.00847168627569772 HVQVSYHLP 9 Unmodified _HVQVSYHLP_ 0 0 0 REV__ENST00000504385.5_1_5:180220070-180235543:-|nuORF REV__ENST00000504385.5_1_5:180220070-180235543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.5262145996094 3 360.525936 1078.55598 -0.41721 -0.00015041 0.15442 5.5673E-05 -0.26279 -9.4741E-05 360.52611281454404 20.585 0.15085 20.585 20.495 20.646 0 18 11 2 0 0 0 0.58466 1 10389 10389 1.1933 0 1 794280 + 21321 28055 14498 14774 25192 25192 0.019842785373839433 HVQYVNSPF 9 Unmodified _HVQYVNSPF_ 0 0 0 REV__ENSG00000101544|ENST00000262198|ADNP2 REV__ENSG00000101544|ENST00000262198|ADNP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.1824951171875 3 364.182058 1089.52434 0.1367 4.9784E-05 0.92489 0.00033683 1.0616 0.00038661 364.18237775475046 31.572 0.31655 31.469 31.357 31.674 -0.10269 19 12 2 0 0 0 0.46577 1 16423 16423 5.7319 0.43497 1 4053300 + 21322 18182 14499 14775 25193 25193 -0.01683714216574117 HVRAHLHPG 9 Unmodified _HVRAHLHPG_ 0 0 0 ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF ENST00000436072.6_1_7:37955747-37956332:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2824096679688 2 512.283392 1022.55223 NaN NaN NaN NaN NaN NaN NaN 24.425 1 24.446 23.946 24.946 0.021185 0 0 0 0.82015 1 12602 12602 5.2307 2.3415 1 21323 13327 14500 14776 25194 25194 0.0418565355417968 HVRLDSLQTF 10 Unmodified _HVRLDSLQTF_ 0 0 0 REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8880920410156 3 405.887533 1214.64077 -0.22082 -8.9627E-05 0.69945 0.0002839 0.47863 0.00019427 405.88787044346964 32.809 0.41459 32.65 32.32 32.735 -0.15918 40 17 3 0 0 0 0.60623 1 17140 17140 6.1918 3.1196 1 4013000 + 21324 29996 14501 14777 25195 25195 0.042036042833160536 HVRMHKKL 8 Unmodified _HVRMHKKL_ 0 0 0 REV__ZBTB7A|p.N455K|1|0.29|ENSG00000178951|chr19:4048142-4048142|G/C|missense_variant REV__ZBTB7A|p.N455K|1|0.29|ENSG00000178951|chr19:4048142-4048142|G/C|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.5233764648438 3 350.211406 1047.61239 1.0165 0.000356 4.1534 0.0014546 5.1699 0.0018106 350.2132355726037 26.334 0.11962 23.383 23.319 23.439 -2.9511 9 6 2 0 0 0 8.7369 1 14514 14514 1.8442 0 1 3080600 + 21325 30136 14502 14778 25196 25196 0.0904862789307117 HVRQHNIF 8 Unmodified _HVRQHNIF_ 0 0 0 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7811279296875 2 525.783225 1049.5519 NaN NaN NaN NaN NaN NaN NaN 23.309 1 23.309 22.809 23.809 0 0 0 0 0.9706 1 11877 11877 6.3541 1.5981 1 + 21326 22733 14503 14779 25197 25197 0.02910233834313658 HVRRHGMVIM 10 Unmodified _HVRRHGMVIM_ 0 0 0 REV__nc|ENSG00000196365|P36776-3|LONP1 REV__nc|ENSG00000196365|P36776-3|LONP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.207763671875 3 412.558588 1234.65394 -0.022254 -9.1813E-06 0.86391 0.00035641 0.84165 0.00034723 412.55907924762556 22.3 0.15834 22.318 22.211 22.37 0.01749 9 6 2 0 0 0 0.23922 1 11428 11428 3.8763 1.3778 1 664940 + 21327 23821 14504 14780 25198 25198 0.04599440590072845 HVRRNALAL 9 Unmodified _HVRRNALAL_ 0 0 0 ENSG00000139620|ENST00000420613|KANSL2;nc|ENSG00000139620|Q9H9L4-4|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 ENSG00000139620|ENST00000420613|KANSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5491638183594 3 350.549075 1048.6254 0.90426 0.00031699 -0.45058 -0.00015795 0.45367 0.00015904 350.5490228106689 24.744 0.28833 21.861 21.705 21.993 -2.8831 30 16 2 0 0 0 0.15471 1 13453 13453 27.629 10.516 1 5214700 21328 5170 14505 14781 25199 25199 0.10302782276789912 HVRVIVFVH 9 Unmodified _HVRVIVFVH_ 0 0 0 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.8485717773438 3 369.225821 1104.65563 1.4135 0.00052189 -3.8125 -0.0014077 -2.3991 -0.00088579 369.2243842771312 49.82 0.063084 44.28 44.236 44.299 -5.5391 5 3 2 0 0 0 0.21767 1 31141 31141 2.9952 0 1 6123200 + 21329 23937 14506 14782 25200 25200 0.10749140941993574 HVRYQKLL 8 Unmodified _HVRYQKLL_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8834228515625 3 352.881943 1055.624 0.0051663 1.8231E-06 -1.623 -0.00057273 -1.6178 -0.00057091 352.88233884645575 33.797 0.51285 33.826 33.672 34.185 0.028934 39 22 3 0 0 0 0.74163 1 17800 17800 10.074 3.4436 1 2969600 + 21330 21791 14507 14783 25201 25201 0.09841148188024818 HVRYWLDCL 9 Unmodified _HVRYWLDCL_ 0 0 0 ENSG00000255587|ENST00000612677|RAB44 ENSG00000255587|ENST00000612677|RAB44 ENSG00000255587|ENST00000612677|RAB44 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.269287109375 2 602.800226 1203.5859 -0.5791 -0.00034908 -2.2594 -0.001362 -2.8385 -0.001711 602.7987810645924 35.249 0.21652 35.249 35.09 35.306 0 15 10 2 0 0 0 0.203 1 18658 18658 9.3474 0 1 1751200 21331 10793 14508 14784 25202 25202 -0.007751057889208823 HVSAVNPSY 9 Unmodified _HVSAVNPSY_ 0 0 0 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2413940429688 2 487.240524 972.466495 0.4152 0.0002023 1.2973 0.00063209 1.7125 0.00083439 487.241101249015 27.83 0.27915 24.682 24.547 24.826 -3.1482 22 14 2 0 0 0 0.031062 1 15479 15479 54.774 31.625 1 7892000 21332 9972 14509 14785 25203 25203 -0.020839761420006653 HVSAVNPSY 9 Unmodified _HVSAVNPSY_ 0 0 0 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 487.240524 972.466495 -0.25685 -0.00012515 -1.3756 -0.00067027 -1.6325 -0.00079542 487.23930433401256 24.949 0.027119 24.949 24.924 24.951 0 0.1334 -0.0023074 NaN 54.774 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1176600 21333 9972 14509 14785 -0.020839761420006653 HVSCVKLLL 9 Carbamidomethyl (C) _HVSC(Carbamidomethyl (C))VKLLL_ HVSC(1)VKLLL HVSC(48)VKLLL 0 1 0 ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN ENSG00000105887|ENST00000393085|MTPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8158569335938 2 534.815344 1067.61614 0.68342 0.0003655 -1.0124 -0.00054146 -0.329 -0.00017596 534.8150291710596 49.426 0.26197 49.378 49.231 49.493 -0.047817 25 12 3 0 0 0 0.044296 1 26701 26701 47.594 24.936 1 3327000 21334 2377 14510 14786 25204 25204 235 0.08503252876244005 HVSENRFVY 9 Unmodified _HVSENRFVY_ 0 0 0 REV__nc|ENSG00000144619|Q8IWV2-3|CNTN4 REV__nc|ENSG00000144619|Q8IWV2-3|CNTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1931457519531 3 384.192845 1149.55671 -0.51572 -0.00019813 2.8294 0.001087 2.3137 0.00088891 384.1939710092386 26.022 0.26366 26.022 25.862 26.125 0 24 12 3 0 0 0 0.58466 1 13335 13335 2.9952 1.9238 1 1376400 + 21335 20719 14511 14787 25205 25205 -0.01208926813569633 HVSEVTQAL 9 Unmodified _HVSEVTQAL_ 0 0 0 ENST00000528087.1_1_11:67120378-67120948:-|nuORF ENST00000528087.1_1_11:67120378-67120948:-|nuORF ENST00000528087.1_1_11:67120378-67120948:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2612609863281 2 492.261456 982.50836 -0.47393 -0.0002333 0.52177 0.00025685 0.047839 2.3549E-05 492.26169392663536 31.91 0.46442 31.91 31.739 32.204 0 81 22 5 0 0 0 0.031062 1 16801 16801 54.774 27.89 1 118880000 21336 14849 14512 14788 25206 25206 0.016405795465175288 HVSEVTQAL 9 Unmodified _HVSEVTQAL_ 0 0 0 ENST00000528087.1_1_11:67120378-67120948:-|nuORF ENST00000528087.1_1_11:67120378-67120948:-|nuORF ENST00000528087.1_1_11:67120378-67120948:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2622985839844 2 492.261456 982.50836 0.9265 0.00045608 -0.0032068 -1.5786E-06 0.9233 0.0004545 492.2614460828639 36.89 0.42854 32.606 32.353 32.782 -4.2835 37 25 2 0 0 0 0.0095811 2 21619 21494;21619 81.613 45.486 1 11701000 21337 14849 14512 14788 25207;25208 25208 0.016405795465175288 HVSGAVLTF 9 Unmodified _HVSGAVLTF_ 0 0 0 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7554626464844 2 465.75581 929.497067 0.24729 0.00011517 0.44431 0.00020694 0.69159 0.00032211 465.75565279190084 53.035 0.28368 52.583 52.419 52.703 -0.45173 28 14 3 0 0 0 0.14602 1 28671 28671 28.487 3.813 1 1898900 21338 6436 14513 14789 25209 25209 0.02949802243040267 HVSLVQLTL 9 Unmodified _HVSLVQLTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.3051147460938 2 505.305667 1008.59678 -0.34191 -0.00017277 0.61572 0.00031113 0.27381 0.00013836 505.3058789389696 70.162 0.25776 69.683 69.586 69.844 -0.47903 29 14 3 0 0 0 0.07916 1 38336 38336 37.974 23.136 1 3507200 21339 4431 14514 14790 25210 25210 0.09282619856992369 HVSLVQLTL 9 Unmodified _HVSLVQLTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3057250976562 2 505.305667 1008.59678 0.43443 0.00021952 0.516 0.00026074 0.95043 0.00048026 505.3060660004247 69.608 0.33185 69.639 69.514 69.846 0.030922 36 16 3 0 0 0 0.0095811 1 38283 38283 81.613 50.977 1 12634000 21340 4431 14514 14790 25211 25211 0.09282619856992369 HVSLVQLTL 9 Unmodified _HVSLVQLTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3052978515625 2 505.305667 1008.59678 1.1036 0.00055766 -0.86703 -0.00043812 0.23657 0.00011954 505.30517774153174 94.709 0.71724 88.533 87.976 88.693 -6.1757 68 41 2 0 0 0 0.010818 2 62622 62622;62749 78.149 42.022 1 25993000 21341 4431 14514 14790 25212;25213 25212 0.09282619856992369 HVSNEEEGCL 10 Unmodified _HVSNEEEGCL_ 0 0 0 REV__ENSG00000181544|ENST00000650831|FANCB REV__ENSG00000181544|ENST00000650831|FANCB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2463989257812 2 558.734945 1115.45534 0.35616 0.000199 -1.3559 -0.00075759 -0.99975 -0.00055859 558.7346387092695 52.55 0.1506 52.55 52.467 52.617 0 10 6 2 0 0 0 0.23412 1 29072 29072 9.3831 1.473 1 3300500 + 21342 23210 14515 14791 25214 25214 -0.09777166298431439 HVSNVTVNY 9 Unmodified _HVSNVTVNY_ 0 0 0 ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000525846.6_1_16:18437791-18443539:-|nuORF;ENST00000536260.5_1_16:16412841-16418555:+|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000534164.5_1_16:15014190-15019904:+|nuORF;ENST00000472413.5_1_16:15016937-15019904:+|nuORF;ENST00000483731.5_1_16:2156634-2163846:-|nuORF;ENST00000565639.6_1_16:2156634-2163199:-|nuORF;ENST00000569983.5_1_16:2156634-2162976:-|nuORF;ENST00000458669.1_1_16:16412841-16418244:+|nuORF ENSG00000008710|ENST00000262304|PKD1 ENSG00000008710|ENST00000262304|PKD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.760009765625 2 516.759081 1031.50361 NaN NaN NaN NaN NaN NaN NaN 29.418 1 29.418 28.918 29.918 0 0 0 0 0.16996 1 15236 15236 34.402 19.563 1 21343 395 14516 14792 25215 25215 -0.010883045962373217 HVSTPLPVM 9 Oxidation (M) _HVSTPLPVM(Oxidation (M))_ HVSTPLPVM(1) HVSTPLPVM(54) 0 0 1 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7618103027344 2 498.762778 995.511002 NaN NaN NaN NaN NaN NaN NaN 38.565 1 38.565 38.065 39.065 0 0 0 0 0.060495 1 20607 20607 53.576 23.351 1 21344 1827 14517 14793 25216 25216 304 0.01306711679842465 HVSTPLPVM 9 Oxidation (M) _HVSTPLPVM(Oxidation (M))_ HVSTPLPVM(1) HVSTPLPVM(54) 0 0 1 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7631225585938 2 498.762778 995.511002 NaN NaN NaN NaN NaN NaN NaN 38.754 1 38.754 38.254 39.254 0 0 0 0 0.060495 1 20721 20721 53.576 30.427 1 21345 1827 14517 14793 25217 25217 304 0.01306711679842465 HVSTPLPVM 9 Oxidation (M) _HVSTPLPVM(Oxidation (M))_ HVSTPLPVM(1) HVSTPLPVM(71) 0 0 1 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.762939453125 2 498.762778 995.511002 -0.12528 -6.2484E-05 0.50933 0.00025403 0.38405 0.00019155 498.7630769629856 38.818 0.23181 38.531 38.398 38.63 -0.28687 23 10 3 0 0 0 0.013472 1 20451 20451 70.716 47.567 1 3209000 21346 1827 14517 14793 25218 25218 304 0.01306711679842465 HVSTPLPVM 9 Oxidation (M) _HVSTPLPVM(Oxidation (M))_ HVSTPLPVM(1) HVSTPLPVM(47) 0 0 1 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7628479003906 2 498.762778 995.511002 -0.13804 -6.885E-05 -0.72762 -0.00036291 -0.86566 -0.00043176 498.7626635058815 39.019 0.23057 38.733 38.63 38.861 -0.28687 18 9 3 0 0 0 0.045537 1 20602 20602 46.921 33.413 1 3073300 21347 1827 14517 14793 25219 25219 304 0.01306711679842465 HVSTPLPVM 9 Unmodified _HVSTPLPVM_ 0 0 0 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000454936.5_1_22:50684197-50686327:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7664184570312 2 490.76532 979.516088 1.3742 0.00067441 -1.4801 -0.00072636 -0.10585 -5.1948E-05 490.7642403248206 58.993 0.44614 52.919 52.635 53.081 -6.0745 34 24 2 0 0 0 0.023164 1 37800 37800 60.39 30.165 1 19527000 21348 1827 14517 14794 25220 25220 0.02551015542451296 HVSTYSVQCY 10 Unmodified _HVSTYSVQCY_ 0 0 0 REV__ENST00000309964.8_1_4:56322453-56325104:-|nuORF REV__ENST00000309964.8_1_4:56322453-56325104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1788024902344 3 396.178096 1185.51246 -0.35908 -0.00014226 1.3158 0.00052131 0.95677 0.00037905 396.17873058944525 23.191 0.38638 23.191 22.921 23.307 0 47 19 3 0 0 0 0.70951 1 11816 11816 0.77653 0 1 1299700 + 21349 25410 14518 14795 25221 25221 -0.0728769902204931 HVTALVAEY 9 Unmodified _HVTALVAEY_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENST00000481051.1_1_13:99478197-99481725:-|nuORF ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7703247070312 2 501.766374 1001.5182 1.1613 0.00058269 -0.75186 -0.00037726 0.40942 0.00020543 501.7659420221894 42.807 0.20726 42.807 42.682 42.889 0 18 10 2 0 0 0 0.016184 1 23161 23161 67.344 33.241 1 3497400 21350 1489 14519 14796 25222 25222 0.01749767551905279 HVTFPEQQT 9 Unmodified _HVTFPEQQT_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MSMS AL20221201_MKP_PDAC_01 4 362.8453674316406 3 362.845334 1085.51417 NaN NaN NaN NaN NaN NaN NaN 46.736 1 41.655 41.155 42.155 -5.0805 0 0 0 0.50124 1 28926 28926 10.8 1.2555 1 21351 6354 14520 14797 25223 25223 -0.025163219418118388 HVTISNITL 9 Unmodified _HVTISNITL_ 0 0 0 nc|ENSG00000172717|Q8N9W8|GARIN2;ENSG00000172717|ENST00000696955|GARIN2 nc|ENSG00000172717|Q8N9W8|GARIN2 nc|ENSG00000172717|Q8N9W8|GARIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7888793945312 2 499.287474 996.560395 1.0687 0.00053361 -1.3919 -0.00069498 -0.32321 -0.00016137 499.7878690636605 57.285 0.52946 51.258 51.022 51.552 -6.0275 70 29 3 0 0 0 0.05447 1 36608 36608 43.858 5.8843 1 94334000 21352 8244 14521 14798 25224 25224 0.061977429602734446 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7171936035156 2 443.716882 885.41921 0.15762 6.9941E-05 -0.64271 -0.00028518 -0.48509 -0.00021524 443.7165119214029 31.4 0.6358 31.297 31.013 31.649 -0.10269 39 25 2 0 0 0 0.74163 2 16427 16427;16445 13.508 0.97634 1 2877200 + 21353 29815 14522 14799 25225;25226 25225 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7164611816406 2 443.716882 885.41921 -0.30285 -0.00013438 -1.568 -0.00069576 -1.8709 -0.00083015 443.71619335149603 33.578 0.40932 33.419 33.144 33.553 -0.15918 31 16 3 0 0 0 0.74163 1 17540 17540 13.508 0.97634 1 1781400 + 21354 29815 14522 14799 25227 25227 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7149047851562 2 443.716882 885.41921 -0.3066 -0.00013605 -1.5472 -0.0006865 -1.8538 -0.00082254 443.7159943697334 33.824 0.57589 33.662 33.528 34.104 -0.16152 40 22 2 0 0 0 0.74163 1 17644 17644 13.508 0.97634 1 1504200 + 21355 29815 14522 14799 25228 25228 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7164611816406 2 443.716882 885.41921 -0.031278 -1.3879E-05 -1.1082 -0.00049173 -1.1395 -0.00050561 443.7162737064564 38.28 0.45245 37.993 37.787 38.239 -0.28687 32 20 2 0 0 0 0.74163 1 20118 20118 13.508 0.97634 1 929050 + 21356 29815 14522 14799 25229 25229 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7162170410156 2 443.716882 885.41921 0.9875 0.00043817 -2.2747 -0.0010093 -1.2872 -0.00057114 443.7154835835211 34.686 0.53709 30.591 30.319 30.856 -4.0951 48 31 2 0 0 0 0.61462 2 19931 19931;20071 24.674 3.8027 1 7920000 + 21357 29815 14522 14799 25230;25231 25230 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MSMS AL20221201_MKP_PDAC_01 4 443.7166442871094 2 443.716882 885.41921 NaN NaN NaN NaN NaN NaN NaN 34.938 1 30.843 30.343 31.343 -4.0951 0 0 0 0.77249 1 20202 20202 24.674 1.5255 1 + 21358 29815 14522 14799 25232 25232 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 443.7166442871094 2 443.716882 885.41921 0.9875 0.00043817 -2.2747 -0.0010093 -1.2872 -0.00057114 443.7154835835211 34.686 0.53709 30.591 30.319 30.856 -4.0951 48 31 2 0 0 0 8.7369 1 20202 20202 24.674 3.8027 1 7920000 + 21359 29815 14522 14799 25233 25233 -0.028082554129923665 HVTLQSSD 8 Unmodified _HVTLQSSD_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.716882 885.41921 -0.3066 -0.00013605 -1.5472 -0.0006865 -1.8538 -0.00082254 443.7159943697334 33.824 0.57589 33.662 33.528 34.104 -0.16152 -0.051084 -0.0001457 NaN 13.508 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 1504200 + 21360 29815 14522 14799 -0.028082554129923665 HVTLYSKS 8 Unmodified _HVTLYSKS_ 0 0 0 REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337 REV__nc|ENSG00000130684|Q9Y3M9-2|ZNF337 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7538452148438 2 467.753267 933.491981 0.95946 0.00044879 0.8778 0.00041059 1.8373 0.00085938 467.75368241763454 19.495 0.29756 16.838 16.689 16.987 -2.6564 66 28 3 0 0 0 0.67481 1 10279 10279 19.439 1.304 1 19111000 + 21361 19732 14523 14800 25234 25234 0.022574983804247495 HVTMANRELA 10 Unmodified _HVTMANRELA_ 0 0 0 nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.1991577148438 3 381.197602 1140.57098 0.61016 0.00023259 0.8072 0.0003077 1.4174 0.00054029 381.1981535939235 71.739 0.25101 71.778 71.642 71.893 0.039024 26 11 3 0 0 0 0.67033 1 39515 39515 3.3196 0.3244 1 2261200 21362 4297 14524 14801 25235 25235 0.0063140234306047205 HVTMANRELA 10 Unmodified _HVTMANRELA_ 0 0 0 nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 381.197602 1140.57098 0.59925 0.00022843 0.57925 0.00022081 1.1785 0.00044924 381.19784319787414 72.314 0.2091 71.838 71.709 71.918 -0.47609 0.030322 -0.00015601 NaN 3.3196 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 692740 21363 4297 14524 14801 0.0063140234306047205 HVTMEAPQRQQ 11 Unmodified _HVTMEAPQRQQ_ 0 0 0 ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2180480957031 3 442.219066 1323.63537 1.377 0.00060893 -1.2133 -0.00053653 0.16371 7.2395E-05 442.218045848816 94.212 0.46977 88.036 87.862 88.332 -6.1757 58 27 4 0 0 0 0.54936 2 62361 62361;62482 7.4771 3.89 1 35490000 21364 12288 14525 14802 25236;25237 25236 -0.013504425707878909 HVTMEAPQRQQ 11 Unmodified _HVTMEAPQRQQ_ 0 0 0 ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2191467285156 3 442.219066 1323.63537 1.6266 0.00071929 -1.5641 -0.00069169 0.062429 2.7607E-05 442.2181065492467 97.437 0.19421 91.261 91.155 91.349 -6.1757 18 10 2 0 0 0 0.63851 1 64571 64571 4.7159 0 1 9294400 21365 12288 14525 14802 25238 25238 -0.013504425707878909 HVTMSTNNR 9 Unmodified _HVTMSTNNR_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20221201_MKP_PDAC_01 4 353.8381958007812 3 353.838185 1058.49273 NaN NaN NaN NaN NaN NaN NaN 46.616 1 41.536 41.036 42.036 -5.0805 0 0 0 0.6032 1 28837 28837 8.1555 1.4324 1 21366 9762 14526 14803 25239 25239 -0.03418030242187342 HVTMVVAEL 9 Oxidation (M) _HVTM(Oxidation (M))VVAEL_ HVTM(1)VVAEL HVTM(120)VVAEL 0 0 1 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7689208984375 2 507.76806 1013.52157 NaN NaN NaN NaN NaN NaN NaN 43.803 1 43.803 43.303 44.303 0 0 0 0 0.020569 1 23814 23814 117.6 75.504 1 21367 1553 14527 14804 25240 25240 261 0.015346943342592567 HVTMVVAEL 9 Unmodified _HVTMVVAEL_ 0 0 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7713012695312 2 499.770603 997.526652 1.2244 0.00061193 -0.99898 -0.00049926 0.22545 0.00011267 499.77032873302795 63.019 0.34478 56.844 56.636 56.98 -6.1757 28 17 2 0 0 0 0.0083087 1 40656 40656 97.075 62.887 1 18815000 21368 1553 14527 14805 25241 25241 0.027789981968680877 HVTQEDFEM 9 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ HVTQEDFEM(1) HVTQEDFEM(44) 0 0 1 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2379760742188 2 576.237321 1150.46009 -0.026529 -1.5287E-05 1.4083 0.00081154 1.3818 0.00079625 576.2382455751199 23.255 0.31138 23.255 23.056 23.367 0 37 15 3 0 0 0 0.05483 1 11789 11789 43.772 25.626 1 2590300 21369 1458 14528 14806 25242 25242 250 -0.10912282155686626 HVTQEDFEM 9 Oxidation (M) _HVTQEDFEM(Oxidation (M))_ HVTQEDFEM(1) HVTQEDFEM(96) 0 0 1 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000584657.1_1_17:61909038-61909326:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2368774414062 2 576.237321 1150.46009 0.48258 0.00027808 -0.38723 -0.00022314 0.095343 5.494E-05 576.237317389011 26.484 0.3339 23.533 23.34 23.674 -2.9511 27 17 2 0 0 0 0.0082353 1 14580 14580 96.111 52.253 1 12683000 21370 1458 14528 14806 25243 25243 250 -0.10912282155686626 HVTSPGPSS 9 Unmodified _HVTSPGPSS_ 0 0 0 REV__ENST00000252809.3_1_19:18499735-18499897:+|nuORF REV__ENST00000252809.3_1_19:18499735-18499897:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.7117919921875 2 434.711599 867.408646 NaN NaN NaN NaN NaN NaN NaN 46.834 1 41.753 41.253 42.253 -5.0805 0 0 0 0.23581 1 28998 28998 28.487 1.6032 1 + 21371 24892 14529 14807 25244 25244 -0.03036238067420527 HVTTSVDAG 9 Unmodified _HVTTSVDAG_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7155456542969 2 443.716882 885.41921 0.13806 6.1262E-05 -1.6664 -0.0007394 -1.5283 -0.00067813 443.7160261075457 24.967 0.21033 24.96 24.845 25.056 -0.0070992 13 8 2 0 0 0 0.087258 1 12766 12766 36.044 15.591 1 4017600 21372 9983 14530 14808 25245 25245 -0.028082554129923665 HVTTSVDAG 9 Unmodified _HVTTSVDAG_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7156677246094 2 443.716882 885.41921 -0.51362 -0.0002279 -2.7825 -0.0012346 -3.2961 -0.0014625 443.7155022444956 35.976 0.19221 35.754 35.621 35.813 -0.2224 12 8 2 0 0 0 0.12841 1 18860 18860 30.225 10.786 1 3711700 21373 9983 14530 14808 25246 25246 -0.028082554129923665 HVTTSVDAG 9 Unmodified _HVTTSVDAG_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7158508300781 2 443.716882 885.41921 NaN NaN NaN NaN NaN NaN NaN 24.586 1 24.584 24.084 25.084 -0.0016766 0 0 0 0.15618 1 12568 12568 36.044 12.896 1 21374 9983 14530 14808 25247 25247 -0.028082554129923665 HVTTSVDAG 9 Unmodified _HVTTSVDAG_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MSMS AL20221201_MKP_PDAC_01 4 443.7163391113281 2 443.716882 885.41921 NaN NaN NaN NaN NaN NaN NaN 27.715 1 24.678 24.178 25.178 -3.0365 0 0 0 0.33856 1 15381 15381 23.148 2.2772 1 21375 9983 14530 14808 25248 25248 -0.028082554129923665 HVTTSVDAG 9 Unmodified _HVTTSVDAG_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 443.716882 885.41921 -0.1679 -7.4501E-05 1.2363 0.00054855 1.0684 0.00047405 443.71606096871346 24.771 0.30627 24.771 24.65 24.956 0 -0.09458 0.0022089 NaN 36.044 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1436500 21376 9983 14530 14808 -0.028082554129923665 HVTVLPKMIK 10 Unmodified _HVTVLPKMIK_ 0 0 0 ENSG00000182264|ENST00000332955|IZUMO1 ENSG00000182264|ENST00000332955|IZUMO1 ENSG00000182264|ENST00000332955|IZUMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2425842285156 3 389.242372 1164.70529 0.19403 7.5523E-05 -0.70681 -0.00027512 -0.51279 -0.0001996 389.24197531569445 61.868 0.54464 61.836 61.711 62.256 -0.032787 66 27 4 0 0 0 0.71276 1 33908 33908 0.62683 0 1 20334000 21377 9040 14531 14809 25249 25249 0.1295208783576527 HVVAASKAM 9 Unmodified _HVVAASKAM_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS AL20221201_MKP_PDAC_01 4 457.2500915527344 2 457.249837 912.485122 NaN NaN NaN NaN NaN NaN NaN 16.63 1 14.073 13.573 14.573 -2.557 0 0 0 0.080768 1 8629 8629 48.346 19.859 1 21378 9221 14532 14810 25250 25250 0.02537862228200538 HVVGVDVGF 9 Unmodified _HVVGVDVGF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7484436035156 2 464.747985 927.481417 0.59695 0.00027743 0.17316 8.0475E-05 0.77011 0.00035791 464.7479608394707 52.624 0.24239 52.624 52.53 52.773 0 22 10 3 0 0 0 0.027803 1 29138 29138 56.541 36.088 1 2938700 21379 9729 14533 14811 25251 25251 0.014775157260032756 HVVGVDVGF 9 Unmodified _HVVGVDVGF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 464.747985 927.481417 0.24427 0.00011352 -0.1355 -6.2974E-05 0.10877 5.0551E-05 464.74787857846616 53.133 0.2086 52.681 52.574 52.783 -0.45173 0.02842 -0.00014658 NaN 56.541 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1423000 21380 9729 14533 14811 0.014775157260032756 HVVHAQVR 8 Unmodified _HVVHAQVR_ 0 0 0 REV__nc|ENSG00000088970|Q2M2Z5-3|KIZ REV__nc|ENSG00000088970|Q2M2Z5-3|KIZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2734680175781 2 473.272493 944.530432 NaN NaN NaN NaN NaN NaN NaN 103.68 1 103.64 103.14 104.14 -0.047928 0 0 0 0.97444 1 57579 57579 0.79363 0.10326 1 + 21381 17821 14534 14812 25252 25252 0.05594848805606034 HVVNLGSNQY 10 Unmodified _HVVNLGSNQY_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7831420898438 2 565.783087 1129.55162 -1.0548 -0.00059677 0.099021 5.6024E-05 -0.95574 -0.00054074 565.783363969642 32.499 0.13564 32.499 32.444 32.58 0 18 9 3 0 0 0 0.0093042 1 16971 16971 88.954 56.648 1 5598200 21382 3520 14535 14813 25253 25253 -0.007972306761757864 HVVNLGSNQY 10 Unmodified _HVVNLGSNQY_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.78466796875 2 565.783087 1129.55162 NaN NaN NaN NaN NaN NaN NaN 32.556 1 32.427 31.927 32.927 -0.12915 0 0 0 0.54588 1 16954 16954 24.021 16.731 1 21383 3520 14535 14813 25254 25254 -0.007972306761757864 HVVNLGSNQY 10 Unmodified _HVVNLGSNQY_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.783203125 2 565.783087 1129.55162 1.3893 0.00078605 0.56789 0.0003213 1.9572 0.0011073 565.7831938314996 37.524 0.53302 33.241 32.873 33.406 -4.2835 81 31 3 0 0 0 0.024115 2 22075 21953;22075 71.922 59.682 1 36685000 21384 3520 14535 14813 25255;25256 25256 -0.007972306761757864 HVVRHWPPP 9 Unmodified _HVVRHWPPP_ 0 0 0 ENSG00000261587|ENST00000696146|TMEM249 ENSG00000261587|ENST00000696146|TMEM249 ENSG00000261587|ENST00000696146|TMEM249 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.2990112304688 2 562.809242 1123.60393 0.6275 0.00035316 -3.4502 -0.0019418 -2.8227 -0.0015886 562.8069776889258 46.467 0.14913 41.386 41.331 41.48 -5.0805 25 17 2 0 0 0 0.19298 1 28669 28669 13.508 5.5977 1 88716000 21385 10840 14536 14814 25257 25257 0.047073972480802695 HVVRLYDFF 9 Unmodified _HVVRLYDFF_ 0 0 0 nc|ENSG00000125875|Q96BZ9-3|TBC1D20;ENSG00000125875|ENST00000354200|TBC1D20;ENST00000494633.1_1_20:419232-422368:-|nuORF nc|ENSG00000125875|Q96BZ9-3|TBC1D20 nc|ENSG00000125875|Q96BZ9-3|TBC1D20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3186645507812 2 598.316566 1194.61858 0.33936 0.00020305 -2.2686 -0.0013574 -1.9293 -0.0011543 599.31815707064 59.012 0.33642 58.521 58.348 58.685 -0.49079 26 15 3 0 0 0 0.55144 1 32097 32097 4.3292 1.0479 1 1717900 21386 3905 14537 14815 25258 25258 0.029054246055466137 HVWAALCA 8 Unmodified _HVWAALCA_ 0 0 0 ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7178955078125 2 435.718173 869.421793 0.22328 9.7286E-05 -0.43095 -0.00018777 -0.20768 -9.0488E-05 435.7181306715648 42.097 0.28962 42.088 41.937 42.227 -0.0088196 30 13 3 0 0 0 0.70131 1 22498 22498 17.087 17.087 1 74077000 21387 14502 14538 14816 25259 25259 -0.018140784890420036 HVWAALCA 8 Unmodified _HVWAALCA_ 0 0 0 ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.71826171875 2 435.718173 869.421793 0.62731 0.00027333 -0.31892 -0.00013896 0.30839 0.00013437 435.71813777050113 46.655 2.6003 41.574 41.304 43.904 -5.0805 610 228 4 0 0 0 0.70131 2 29227 29227;29627 17.087 17.087 1 1656599999.9999998 21388 14502 14538 14816 25260;25261 25260 -0.018140784890420036 HVWAALCA 8 Unmodified _HVWAALCA_ 0 0 0 ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 436.2312927246094 2 435.718173 869.421793 0.90096 0.00039256 -0.76351 -0.00033267 0.13745 5.989E-05 435.71796215503355 34.428 0.37521 30.333 30.128 30.503 -4.0951 29 21 2 0 0 0 8.7369 1 19723 19723 2.8892 2.8892 1 21919000 21389 14502 14538 14816 25262 25262 -0.018140784890420036 HVWAALCA 8 Unmodified _HVWAALCA_ 0 0 0 ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF ENST00000504818.5_1_4:41258993-41262665:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.718173 869.421793 -0.02733 -1.1908E-05 -0.25089 -0.00010932 -0.27822 -0.00012123 435.718053411171 42.36 0.27921 42.053 41.9 42.179 -0.30682 -0.017288 7.2755E-05 NaN 17.087 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 139740000 21390 14502 14538 14816 -0.018140784890420036 HVWESNCKF 9 Unmodified _HVWESNCKF_ 0 0 0 REV__ENSG00000182168|ENST00000453304|UNC5C REV__ENSG00000182168|ENST00000453304|UNC5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.84326171875 3 383.843048 1148.50731 0.28884 0.00011087 -0.27567 -0.00010581 0.013168 5.0545E-06 383.8430467265753 48.794 0.29977 48.422 48.297 48.597 -0.37172 49 16 4 0 0 0 0.53666 1 26269 26269 2.9952 0 1 32828000 + 21391 23247 14539 14817 25263 25263 -0.060999580940460874 HVWLLQRRRYE 11 Unmodified _HVWLLQRRRYE_ 0 0 0 ENST00000370641.3_1_1:84967597-84971964:-|nuORF ENST00000370641.3_1_1:84967597-84971964:-|nuORF ENST00000370641.3_1_1:84967597-84971964:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 778.6875610351562 2 778.433858 1554.85316 NaN NaN NaN NaN NaN NaN NaN 92.396 1 92.426 91.926 92.926 0.030197 0 0 0 0.93933 1 51379 51379 2.9952 2.6446 1 21392 12337 14540 14818 25264 25264 0.09793115414004205 HVYALTHYS 9 Unmodified _HVYALTHYS_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.182373046875 3 364.182058 1089.52434 -0.13586 -4.9479E-05 0.37988 0.00013835 0.24402 8.8867E-05 364.18225676464294 31.635 0.23511 31.635 31.523 31.758 0 26 11 3 0 0 0 0.37804 1 16485 16485 13.042 7.7456 1 2615200 + 21393 20349 14541 14819 25265 25265 -0.016837142165968544 HVYALTHYS 9 Unmodified _HVYALTHYS_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.1817932128906 3 364.182058 1089.52434 -0.27841 -0.00010139 -0.72124 -0.00026266 -0.99964 -0.00036405 364.18159258058444 31.439 0.17649 31.469 31.346 31.522 0.030106 12 7 2 0 0 0 0.48152 1 16469 16469 5.2969 1.4206 1 3446400 + 21394 20349 14541 14819 25266 25266 -0.016837142165968544 HVYALTHYS 9 Unmodified _HVYALTHYS_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 364.182058 1089.52434 0.1367 4.9784E-05 0.92489 0.00033683 1.0616 0.00038661 364.18237775475046 31.572 0.31655 31.469 31.357 31.674 -0.10269 -0.055072 0.00038116 NaN 13.042 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4053300 + 21395 20349 14541 14819 -0.016837142165968544 HVYALTHYS 9 Unmodified _HVYALTHYS_ 0 0 0 REV__ENSG00000138642|ENST00000264346|HERC6 REV__ENSG00000138642|ENST00000264346|HERC6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 364.182058 1089.52434 -0.27841 -0.00010139 -0.72124 -0.00026266 -0.99964 -0.00036405 364.18159258058444 31.439 0.17649 31.469 31.346 31.522 0.030106 -0.055598 -0.0014173 NaN 13.042 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3446400 + 21396 20349 14541 14819 -0.016837142165968544 HVYDFRAF 8 Unmodified _HVYDFRAF_ 0 0 0 REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1743469238281 3 352.175015 1053.50321 -1.2912 -0.00045474 0.006105 2.15E-06 -1.2851 -0.00045259 352.17505601399915 32.442 0.26479 32.442 32.334 32.599 0 30 16 3 0 0 0 0.79783 1 16947 16947 7.9102 0.62092 1 13734000 + 21397 27259 14542 14820 25267 25267 -0.021396795254531753 HVYDFRAF 8 Unmodified _HVYDFRAF_ 0 0 0 REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.5092468261719 3 352.175015 1053.50321 -0.20181 -7.1074E-05 0.38227 0.00013463 0.18046 6.3553E-05 352.175164925017 32.48 0.35583 32.351 32.149 32.505 -0.12915 49 15 4 0 0 0 0.80383 2 16867 16867;16970 4.3292 2.4229 1 28735000 + 21398 27259 14542 14820 25268;25269 25268 -0.021396795254531753 HVYDFRAF 8 Unmodified _HVYDFRAF_ 0 0 0 REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF REV__ENST00000456845.6_1_8:38852921-38853071:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.5092468261719 3 352.175015 1053.50321 -0.20181 -7.1074E-05 0.38227 0.00013463 0.18046 6.3553E-05 352.175164925017 32.48 0.35583 32.351 32.149 32.505 -0.12915 49 15 4 0 0 0 8.7369 1 16867 16867 4.3292 0.73274 1 28735000 + 21399 27259 14542 14820 25270 25270 -0.021396795254531753 HVYEIPVEY 9 Unmodified _HVYEIPVEY_ 0 0 0 ENSG00000130517|ENST00000269919|PGPEP1 ENSG00000130517|ENST00000269919|PGPEP1 ENSG00000130517|ENST00000269919|PGPEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7855834960938 2 574.784764 1147.55498 1.1659 0.00067014 -0.030833 -1.7723E-05 1.1351 0.00065242 574.7846519806893 61.034 0.88012 54.886 54.532 55.412 -6.1478 167 45 5 0 0 0 0.042911 1 39140 39140 48.346 8.3885 1 992650000 21400 4218 14543 14821 25271 25271 -0.012899806221867038 HVYEIPVEY 9 Unmodified _HVYEIPVEY_ 0 0 0 ENSG00000130517|ENST00000269919|PGPEP1 ENSG00000130517|ENST00000269919|PGPEP1 ENSG00000130517|ENST00000269919|PGPEP1 MSMS AL20221201_MKP_PDAC_01 4 574.7849731445312 2 574.784764 1147.55498 NaN NaN NaN NaN NaN NaN NaN 61.566 1 55.39 54.89 55.89 -6.1757 0 0 0 0.17247 1 39665 39665 34.102 1.797 1 21401 4218 14543 14821 25272 25272 -0.012899806221867038 HVYGLSTVY 9 Unmodified _HVYGLSTVY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7666015625 2 519.766374 1037.5182 NaN NaN NaN NaN NaN NaN NaN 46.556 1 46.22 45.72 46.72 -0.33664 0 0 0 0.045101 1 24924 24924 59.795 41.66 1 21402 4022 14544 14822 25273 25273 0.0009376755190260155 HVYRKTFFY 9 Unmodified _HVYRKTFFY_ 0 0 0 ENST00000297109.10_1_5:153835699-153835933:+|nuORF ENST00000297109.10_1_5:153835699-153835933:+|nuORF ENST00000297109.10_1_5:153835699-153835933:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.887939453125 3 420.888986 1259.64513 -0.37451 -0.00015763 -1.4674 -0.00061762 -1.8419 -0.00077525 420.8886297773529 22.67 0.247 22.67 22.507 22.754 0 23 11 3 0 0 0 0.55144 1 11500 11500 2.4985 0 1 1263600 21403 11520 14545 14823 25274 25274 0.025691134969065388 HVYVNASPKEF 11 Unmodified _HVYVNASPKEF_ 0 0 0 REV__ENST00000261254.7_1_12:4413768-4413960:+|nuORF REV__ENST00000261254.7_1_12:4413768-4413960:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8875122070312 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 29.607 1 29.607 29.107 30.107 0 0 0 0 0.9385 1 15342 15342 1.4551 0 1 + 21404 24979 14546 14824 25275 25275 0.0072018456346540916 HVYWTDDEV 9 Unmodified _HVYWTDDEV_ 0 0 0 nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L nc|ENSG00000290796|A4QPB2-2|LRP5L nc|ENSG00000290796|A4QPB2-2|LRP5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5043334960938 3 388.504978 1162.4931 0.38829 0.00015085 -1.6163 -0.00062795 -1.228 -0.00047709 388.5044181428572 38.64 0.18985 38.64 38.535 38.725 0 27 8 4 0 0 0 0.58466 1 20679 20679 1.1933 0.12188 1 2269800 21405 16638 14547 14825 25276 25276 -0.0816433204133773 HWAEICETF 9 Carbamidomethyl (C) _HWAEIC(Carbamidomethyl (C))ETF_ HWAEIC(1)ETF HWAEIC(89)ETF 0 1 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7574462890625 2 596.758223 1191.50189 0.0038773 2.3138E-06 -0.80233 -0.0004788 -0.79845 -0.00047648 596.7580530364728 62.077 0.73416 55.902 55.708 56.442 -6.1757 87 40 3 0 0 0 0.0086179 3 39979 39979;40109;40239 101.72 81.268 1 82729000 21406 5740 14548 14826 25277;25278;25279 25277 588 -0.08619681676532309 HWCAVPILF 9 Carbamidomethyl (C) _HWC(Carbamidomethyl (C))AVPILF_ HWC(1)AVPILF HWC(56)AVPILF 0 1 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7940673828125 2 571.794412 1141.57427 0.39735 0.0002272 0.97622 0.0005582 1.3736 0.0007854 571.7942673060871 99.866 0.10394 93.69 93.611 93.715 -6.1757 10 7 2 0 0 0 0.028712 1 66654 66654 56.048 25.823 1 28902000 21407 816 14549 14827 25280 25280 70 0.009146971877044052 HWCVWFWFFQ 10 Unmodified _HWCVWFWFFQ_ 0 0 0 ENST00000346603.4_1_17:21075288-21081576:+|nuORF ENST00000346603.4_1_17:21075288-21081576:+|nuORF ENST00000346603.4_1_17:21075288-21081576:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.3316650390625 2 743.331693 1484.64883 NaN NaN NaN NaN NaN NaN NaN 95.748 1 95.379 94.879 95.879 -0.36814 0 0 0 1.0061 1 52296 52296 0 0 1 21408 12031 14550 14828 25281 25281 -0.0741054000091026 HWDFDADGC 9 Unmodified _HWDFDADGC_ 0 0 0 REV__CON__P02672 REV__CON__P02672 MSMS AL20221201_MKP_PDAC_01 4 533.190185546875 2 533.190174 1064.36579 NaN NaN NaN NaN NaN NaN NaN 6.9146 1 4.4326 3.9326 4.9326 -2.482 0 0 0 0.8622 1 3495 3495 0 0 1 + + 21409 16841 14551 14829 25282 25282 -0.16381376187155183 HWDPQEVTL 9 Unmodified _HWDPQEVTL_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7741088867188 2 562.772188 1123.52982 0.5847 0.00032905 -1.3716 -0.00077188 -0.78687 -0.00044283 562.7714483041914 53.305 0.66916 53.305 52.958 53.627 0 54 30 3 0 0 0 0.032796 1 29510 29510 53.833 23.196 1 8290900 21410 5129 14552 14830 25283 25283 -0.027000354247547875 HWDPQEVTL 9 Unmodified _HWDPQEVTL_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7723999023438 2 562.772188 1123.52982 0.59305 0.00033375 -0.47731 -0.00026861 0.11574 6.5136E-05 562.7717269329785 53.832 0.27983 53.366 53.246 53.526 -0.46664 24 13 2 0 0 0 0.032796 1 29130 29130 53.833 28.433 1 4054400 21411 5129 14552 14830 25284 25284 -0.027000354247547875 HWDPQEVTL 9 Unmodified _HWDPQEVTL_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7711181640625 2 562.772188 1123.52982 1.1347 0.00063857 -0.30656 -0.00017252 0.82812 0.00046605 562.7717905909948 59.895 0.3799 53.781 53.62 54 -6.1147 51 21 3 0 0 0 0.0088174 2 38442 38442;38579 103.75 73.112 1 56118000 21412 5129 14552 14830 25285;25286 25285 -0.027000354247547875 HWDQNLQLHLL 11 Unmodified _HWDQNLQLHLL_ 0 0 0 ENSG00000145198|ENST00000691901|VWA5B2;ENST00000461141.5_1_3:183952309-183959823:+|nuORF ENSG00000145198|ENST00000691901|VWA5B2 ENSG00000145198|ENST00000691901|VWA5B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.9193420410156 3 472.917604 1415.73098 1.0597 0.00050113 1.8015 0.00085198 2.8612 0.0013531 472.9188721279383 79.157 0.63932 72.981 72.611 73.251 -6.1757 86 35 3 0 0 0 0.44612 1 51836 51836 19.144 0 1 21640000 21413 5673 14553 14831 25287 25287 0.03974653611771828 HWDRDHRRYFY 11 Unmodified _HWDRDHRRYFY_ 0 0 0 nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENSG00000109920|ENST00000263773|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF nc|ENSG00000109920|Q8N3X1-2|FNBP4 nc|ENSG00000109920|Q8N3X1-2|FNBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.88818359375 2 825.887272 1649.75999 NaN NaN NaN NaN NaN NaN NaN 99.444 1 99.287 98.787 99.787 -0.1575 0 0 0 0.9435 1 54292 54292 0 0 1 21414 2683 14554 14832 25288 25288 -0.03889809039242209 HWEIKDIFY 9 Unmodified _HWEIKDIFY_ 0 0 0 ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENST00000419457.1_1_13:29296686-29297403:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5451965332031 3 417.544996 1249.61316 0.153 6.3885E-05 1.022 0.00042672 1.175 0.0004906 417.5452644862297 51.896 0.35623 51.837 51.67 52.027 -0.058918 53 16 5 0 0 0 0.36964 1 28077 28077 9.544 0 1 10175000 21415 13088 14555 14833 25289 25289 -0.0016629897691018414 HWFLANVYPE 10 Unmodified _HWFLANVYPE_ 0 0 0 ENST00000489467.1_1_3:16254210-16261548:+|nuORF;ENSG00000131386|ENST00000339732|GALNT15 ENST00000489467.1_1_3:16254210-16261548:+|nuORF ENST00000489467.1_1_3:16254210-16261548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.8763122558594 3 425.876746 1274.60841 -0.50479 -0.00021498 -0.086737 -3.6939E-05 -0.59153 -0.00025192 425.87669867378366 18.32 0.27042 18.32 18.184 18.455 0 81 42 2 0 0 0 0.6966 1 9052 9052 1.5923 0.37745 1 2242300 21416 4320 14556 14834 25290 25290 -0.017911831196897765 HWFLLFGTTE 10 Unmodified _HWFLLFGTTE_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000481173.1_1_3:156867820-156868247:-|nuORF;ENST00000464679.5_1_3:156867272-156869982:-|nuORF;ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.544921875 3 417.544996 1249.61316 0.64425 0.000269 -0.4021 -0.0001679 0.24215 0.00010111 417.5447522941611 57.233 0.27983 57.167 57.018 57.297 -0.066036 34 13 3 0 0 0 0.62068 1 31126 31126 5.7834 1.9071 1 7998100 21417 7044;13980 14557 14835 25291 25291 -0.0016629897691018414 HWGQWRGLQ 9 Unmodified _HWGQWRGLQ_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2939453125 2 584.293956 1166.57336 0.6429 0.00037564 -0.22106 -0.00012916 0.42184 0.00024648 584.29376248948 43.315 1.5789 38.55 38.197 39.775 -4.7648 415 107 6 0 0 0 0.32871 2 26354 26354;26608 15.847 15.847 1 6745599999.999999 + 21418 24608 14558 14836 25292;25293 25292 -0.003263811369834002 HWGREASCFLW 11 Unmodified _HWGREASCFLW_ 0 0 0 ENST00000361722.7_1_17:45788235-45788682:+|nuORF ENST00000361722.7_1_17:45788235-45788682:+|nuORF ENST00000361722.7_1_17:45788235-45788682:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.8839111328125 3 464.548635 1390.62407 NaN NaN NaN NaN NaN NaN NaN 16.16 1 16.16 15.66 16.66 0 0 0 0 0.94301 1 7857 7857 0.094841 0.011491 1 21419 12190 14559 14837 25294 25294 -0.05561219874289236 HWGVFVFCF 9 Unmodified _HWGVFVFCF_ 0 0 0 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.9032592773438 3 381.181112 1140.52151 0.63109 0.00024056 -0.32469 -0.00012377 0.3064 0.0001168 381.18089779078565 23.606 0.17427 20.779 20.669 20.844 -2.8273 14 9 2 0 0 0 0.21767 1 12737 12737 2.9952 0.49676 1 2704200 21420 16074 14560 14838 25295 25295 -0.04313260875096603 HWHPQKRQ 8 Unmodified _HWHPQKRQ_ 0 0 0 REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2 REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7926025390625 2 558.794124 1115.57369 NaN NaN NaN NaN NaN NaN NaN 23.957 1 23.957 23.457 24.457 0 0 0 0 0.97444 1 12226 12226 0.79363 0.19213 1 + 21421 29764 14561 14839 25296 25296 0.020530385828806175 HWHWRRRRRR 10 Unmodified _HWHWRRRRRR_ 0 0 0 REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.4540405273438 2 801.454117 1600.89368 NaN NaN NaN NaN NaN NaN NaN 47.68 1 47.68 47.18 48.18 0 0 0 0 1.0061 1 26115 26115 0 0 1 + 21422 25514 14562 14840 25297 25297 0.11726939367599698 HWKQALLY 8 Unmodified _HWKQALLY_ 0 0 0 nc|ENSG00000198890|Q96LA8-2|PRMT6;ENSG00000198890|ENST00000370078|PRMT6 nc|ENSG00000198890|Q96LA8-2|PRMT6 nc|ENSG00000198890|Q96LA8-2|PRMT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.794921875 2 529.792727 1057.5709 NaN NaN NaN NaN NaN NaN NaN 27.164 1 27.164 26.664 27.664 0 0 0 0 0.97348 1 13988 13988 5.7604 1.4312 1 21423 10188 14563 14841 25298 25298 0.0444177040537852 HWLGPIHW 8 Unmodified _HWLGPIHW_ 0 0 0 REV__nc|ENSG00000106608|Q8TCY9-3|URGCP REV__nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7989501953125 2 523.271961 1044.52937 2.0878 0.0010925 -0.75931 -0.00039733 1.3285 0.00069515 523.2716111311298 95.407 0.35882 95.411 95.265 95.624 0.004158 32 13 3 0 0 0 8.7369 1 53092 53092 11.114 4.7604 1 4666400 + 21424 18519 14564 14842 25299 25299 0.00888634436682878 HWLGYGFYI 9 Unmodified _HWLGYGFYI_ 0 0 0 REV__ENSG00000139514|ENST00000380752|SLC7A1 REV__ENSG00000139514|ENST00000380752|SLC7A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8579406738281 3 385.858915 1154.55492 -0.25595 -9.8762E-05 -1.6967 -0.00065469 -1.9527 -0.00075345 385.8578129374459 32.067 0.16273 32.097 31.988 32.151 0.029743 11 6 2 0 0 0 0.58466 1 16846 16846 1.1933 0.12188 1 1017100 + 21425 20412 14565 14843 25300 25300 -0.0161793583151848 HWLLELPKFVQ 11 Unmodified _HWLLELPKFVQ_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.6044921875 3 470.602845 1408.78671 NaN NaN NaN NaN NaN NaN NaN 16.076 1 16.081 15.581 16.581 0.0050564 0 0 0 0.94201 1 8043 8043 0.36667 0 1 + 21426 17748 14566 14844 25301 25301 0.09866486799319318 HWLPPSACLW 10 Unmodified _HWLPPSACLW_ 0 0 0 ENST00000586142.5_1_18:43309173-43309326:+|nuORF ENST00000586142.5_1_18:43309173-43309326:+|nuORF ENST00000586142.5_1_18:43309173-43309326:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2012023925781 3 403.867305 1208.58008 0.097689 3.9454E-05 -2.434 -0.00098303 -2.3364 -0.00094358 403.86634825999363 61.1 0.35697 61.057 60.805 61.162 -0.04351 36 17 3 0 0 0 0.70951 1 33301 33301 0.77653 0 1 4845500 21427 15618 14567 14845 25302 25302 -0.01586204300610916 HWLWNDQWWWF 11 Unmodified _HWLWNDQWWWF_ 0 0 0 REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF REV__ENST00000431490.1_1_3:45201441-45201549:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.3057861328125 3 568.589599 1702.74697 NaN NaN NaN NaN NaN NaN NaN 68.319 1 68.319 67.819 68.819 0 0 0 0 0.9435 1 38086 38086 0 0 1 + 21428 26978 14568 14846 25303 25303 -0.07629640151367312 HWNEGKQAGY 10 Unmodified _HWNEGKQAGY_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1839599609375 3 397.18435 1188.53122 -0.56583 -0.00022474 -0.12975 -5.1535E-05 -0.69558 -0.00027627 397.1842640727697 18.466 0.2295 18.466 18.357 18.586 0 99 27 5 0 0 0 0.69848 1 9139 9139 3.0723 2.3746 1 26381000 21429 1595 14569 14847 25304 25304 -0.05550401335995048 HWNIKPRSC 9 Unmodified _HWNIKPRSC_ 0 0 0 ENST00000497027.5_1_3:55514830-55515374:-|nuORF ENST00000497027.5_1_3:55514830-55515374:-|nuORF ENST00000497027.5_1_3:55514830-55515374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2933959960938 2 570.790192 1139.56583 -0.13101 -7.478E-05 -1.5442 -0.00088144 -1.6753 -0.00095622 570.7878787645855 51.501 0.64938 51.447 51.087 51.736 -0.053875 40 32 2 0 0 0 0.5029 1 27980 27980 7.2892 0 1 5465800 21430 14392 14570 14848 25305 25305 0.0016314327110649174 HWPAQPFA 8 Unmodified _HWPAQPFA_ 0 0 0 REV__ENST00000480503.5_1_7:45008844-45011824:-|nuORF REV__ENST00000480503.5_1_7:45008844-45011824:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7390747070312 2 477.235045 952.455536 0.9141 0.00043624 -0.1146 -5.4692E-05 0.7995 0.00038155 477.2322954595094 48.335 0.6539 43.101 42.711 43.365 -5.2339 97 39 4 0 0 0 0.77907 1 30024 30024 10.183 0 1 34711000 + 21431 27674 14571 14849 25306 25306 -0.022593337256353152 HWTYLKEWQ 9 Unmodified _HWTYLKEWQ_ 0 0 0 REV__ENSG00000083093|ENST00000261584|PALB2 REV__ENSG00000083093|ENST00000261584|PALB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.81640625 2 645.81693 1289.61931 -0.030168 -1.9483E-05 -0.63038 -0.00040711 -0.66054 -0.00042659 645.8164643359346 86.697 0.49627 86.697 86.494 86.99 0 79 26 5 0 0 0 0.19127 1 48050 48050 24.021 1.2843 1 17761000 + 21432 17711 14572 14850 25307 25307 -0.013917807453935893 HWVLLACV 8 Unmodified _HWVLLACV_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7554626464844 2 470.757298 939.500044 NaN NaN NaN NaN NaN NaN NaN 28.878 1 28.816 28.316 29.316 -0.062159 0 0 0 0.9706 1 14920 14920 6.3541 0.59368 1 + 21433 19721 14573 14851 25308 25308 0.027873540962104926 HWVTHFPY 8 Unmodified _HWVTHFPY_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7620849609375 2 543.761426 1085.5083 NaN NaN NaN NaN NaN NaN NaN 20.72 1 20.72 20.22 21.22 0 0 0 0 0.97444 1 10440 10440 2.5775 0.27475 1 21434 1382 14574 14852 25309 25309 -0.03103375662817598 HWWRLSRQLMR 11 Unmodified _HWWRLSRQLMR_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.6170654296875 3 523.617494 1567.83065 0.12192 6.384E-05 0.49433 0.00025884 0.61625 0.00032268 523.6177016142561 38.77 0.18213 38.782 38.678 38.86 0.011452 23 8 3 0 0 0 0.73349 1 20618 20618 1.1098 0.65524 1 4149300 + 21435 24348 14575 14853 25310 25310 0.06945192744683482 HWWTLDPVHLL 11 Unmodified _HWWTLDPVHLL_ 0 0 0 REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.9197387695312 3 472.918945 1415.73501 1.0596 0.00050113 -1.0339 -0.00048893 0.025786 1.2195E-05 472.9188721279383 79.157 0.63932 72.981 72.611 73.251 -6.1757 86 35 3 0 0 0 0.51324 1 51963 51963 15.739 0.78146 1 21640000 + 21436 29085 14576 14854 25311 25311 0.0437674310546754 HWWTLDPVHLL 11 Unmodified _HWWTLDPVHLL_ 0 0 0 REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.9182434082031 3 472.918945 1415.73501 NaN NaN NaN NaN NaN NaN NaN 45.501 1 40.546 40.046 41.046 -4.9549 0 0 0 0.73964 1 27942 27942 14.957 0.73899 1 + 21437 29085 14576 14854 25312 25312 0.0437674310546754 HYAAAQWDFG 10 Unmodified _HYAAAQWDFG_ 0 0 0 ENSG00000160791|ENST00000292303|CCR5 ENSG00000160791|ENST00000292303|CCR5 ENSG00000160791|ENST00000292303|CCR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2552490234375 2 583.256705 1164.49886 0.86537 0.00050473 -1.3041 -0.00076065 -0.43877 -0.00025592 583.2561144589537 72.63 0.43806 66.454 66.22 66.658 -6.1757 32 22 2 0 0 0 0.50944 1 47452 47452 15.847 5.0233 1 17619000 21438 6754 14577 14855 25313 25313 -0.07681188739024947 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7677001953125 2 546.766709 1091.51886 0.52778 0.00028857 0.24331 0.00013303 0.77109 0.00042161 546.7668051651729 47.026 0.4912 46.69 46.524 47.016 -0.33664 81 24 5 0 0 0 0.0081202 2 25164 25164;25275 93.763 80.255 1 134630000 21439 4360 14578 14856 25314;25315 25314 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7671508789062 2 546.766709 1091.51886 1.3346 0.00072974 -0.3887 -0.00021253 0.94595 0.00051721 546.7664285166344 46.777 0.42815 46.744 46.548 46.976 -0.033417 76 20 5 0 0 0 0.0030119 2 25227 25119;25227 126.6 103.86 1 186410000 21440 4360 14578 14856 25316;25317 25317 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7669067382812 2 546.766709 1091.51886 0.3302 0.00018054 0.28067 0.00015346 0.61087 0.000334 546.7668266931696 51.904 0.48732 46.169 45.906 46.393 -5.7345 76 32 3 0 0 0 0.0030119 2 32701 32568;32701 126.6 103.86 1 261700000 21441 4360 14578 14856 25318;25319 25319 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7664794921875 2 546.766709 1091.51886 0.87601 0.00047897 -0.90155 -0.00049294 -0.025547 -1.3968E-05 546.7662669525582 75.039 1.6943 68.864 67.407 69.102 -6.1757 191 88 3 0 0 0 0.0030119 8 48363 48242;48363;48482;48600;48720;48847;48971;49098 126.6 109.49 1 41202000 21442 4360 14578 14856 25320;25321;25322;25323;25324;25325;25326;25327 25321 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7665405273438 2 546.766709 1091.51886 0.67481 0.00036897 -1.3289 -0.0007266 -0.65409 -0.00035764 546.7659333144337 75.833 1.2814 69.657 69.3 70.581 -6.1757 93 69 2 0 0 0 0.0079702 3 49564 49438;49564;49686 109.15 92.041 1 24597000 21443 4360 14578 14856 25328;25329;25330 25329 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20221201_MKP_PDAC_01 4 546.7686157226562 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 73.237 1 67.061 66.561 67.561 -6.1757 0 0 0 0.018858 1 47900 47900 79.935 62.992 1 21444 4360 14578 14856 25331 25331 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20221201_MKP_PDAC_01 4 546.767578125 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 76.139 1 69.964 69.464 70.464 -6.1757 0 0 0 0.0038686 1 49807 49807 126.6 101.2 1 21445 4360 14578 14856 25332 25332 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20221201_MKP_PDAC_01 4 546.766845703125 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 76.33 1 70.154 69.654 70.654 -6.1757 0 0 0 0.0038686 1 49928 49928 126.6 101.2 1 21446 4360 14578 14856 25333 25333 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20221201_MKP_PDAC_01 4 546.7701416015625 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 76.509 1 70.333 69.833 70.833 -6.1757 0 0 0 0.0095208 1 50047 50047 93.763 75.628 1 21447 4360 14578 14856 25334 25334 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MSMS AL20221201_MKP_PDAC_01 4 546.7681274414062 2 546.766709 1091.51886 NaN NaN NaN NaN NaN NaN NaN 76.693 1 70.517 70.017 71.017 -6.1757 0 0 0 0.014497 1 50165 50165 109.15 83.755 1 21448 4360 14578 14856 25335 25335 -0.023233930084188614 HYAALAHYF 9 Unmodified _HYAALAHYF_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.766709 1091.51886 0.31238 0.0001708 1.9406 0.001061 2.253 0.0012318 546.7689186111226 46.783 0.1806 46.783 46.698 46.879 0 0.044214 0.0022066 NaN 126.6 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1995400 21449 4360 14578 14856 -0.023233930084188614 HYAGRSFQI 9 Unmodified _HYAGRSFQI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;ENSG00000073910|ENST00000542859|FRY ENSG00000075539|ENST00000358350|FRYL;ENSG00000073910|ENST00000542859|FRY ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7759399414062 2 539.775065 1077.53558 1.1758 0.00063466 1.6679 0.00090031 2.8437 0.001535 539.7758216128295 35.929 0.43652 31.736 31.493 31.93 -4.1928 52 27 2 0 0 0 0.14 1 20871 20871 29.082 0.59474 1 8969600 21450 1160;1116 14579 14857 25336 25336 -8.892122423276305E-05 HYAHLIKTF 9 Unmodified _HYAHLIKTF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000495574.1_1_10:129046289-129055694:+|nuORF nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.211181640625 3 377.209948 1128.60801 1.2765 0.0004815 0.20202 7.6203E-05 1.4785 0.0005577 377.21007709648865 36.731 0.57613 32.447 32.22 32.796 -4.2835 106 35 4 0 0 0 0.027803 3 21402 21402;21522;21654 62.573 54.627 1 105890000 21451 6072 14580 14858 25337;25338;25339 25337 0.048854419511371816 HYAHLIKTF 9 Unmodified _HYAHLIKTF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000495574.1_1_10:129046289-129055694:+|nuORF nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MSMS AL20221201_MKP_PDAC_01 4 565.31201171875 2 565.311284 1128.60801 NaN NaN NaN NaN NaN NaN NaN 36.775 1 32.491 31.991 32.991 -4.2835 0 0 0 0.019743 1 21505 21505 78.728 46.691 1 21452 6072 14580 14858 25340 25340 0.048854419511371816 HYAHLIKTF 9 Unmodified _HYAHLIKTF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENST00000495574.1_1_10:129046289-129055694:+|nuORF nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.8825378417969 3 377.209948 1128.60801 0.80703 0.00030442 1.2369 0.00046657 2.0439 0.000771 377.2101397005373 78.601 0.70712 72.425 72.204 72.911 -6.1757 78 42 3 0 0 0 0.15246 1 51631 51631 13.042 4.2971 1 40704000 21453 6072 14580 14858 25341 25341 0.048854419511371816 HYAKIAADF 9 Unmodified _HYAKIAADF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2673950195312 2 518.266542 1034.51853 NaN NaN NaN NaN NaN NaN NaN 35.114 1 34.892 34.392 35.392 -0.2224 0 0 0 0.091025 1 18377 18377 45.7 29.852 1 21454 3530 14581 14859 25342 25342 0.0026518727172515355 HYAKIAADF 9 Unmodified _HYAKIAADF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2667236328125 2 518.266542 1034.51853 0.93015 0.00048207 -0.48301 -0.00025033 0.44714 0.00023174 518.2662886901963 39.25 0.38239 34.799 34.645 35.028 -4.4509 53 23 3 0 0 0 0.032796 3 23228 23209;23228;23365 53.833 34.471 1 44037000 21455 3530 14581 14859 25343;25344;25345 25344 0.0026518727172515355 HYAKLNFVI 9 Unmodified _HYAKLNFVI_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.814453125 2 552.813659 1103.61277 1.153 0.00063737 0.2438 0.00013478 1.3968 0.00077215 552.8137937969515 89.067 0.37323 82.891 82.669 83.042 -6.1757 34 20 2 0 0 0 0.0090524 1 58717 58717 85.357 39.657 1 14907000 21456 9902 14582 14860 25346 25346 0.06510326093894037 HYAKVQLRF 9 Unmodified _HYAKVQLRF_ 0 0 0 nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5394592285156 3 387.889097 1160.64546 -0.043433 -1.6847E-05 0.85021 0.00032979 0.80678 0.00031294 387.88950287017417 34.89 0.30573 34.918 34.796 35.102 0.027401 29 13 4 0 0 0 0.16524 1 18472 18472 26.268 18.113 1 4923300 21457 9568 14583 14861 25347 25347 0.07156533216766547 HYAKVQLRF 9 Unmodified _HYAKVQLRF_ 0 0 0 nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8898010253906 3 387.889097 1160.64546 0.73648 0.00028567 0.52185 0.00020242 1.2583 0.00048809 387.88938649158655 38.764 0.30057 34.313 34.098 34.399 -4.4509 26 18 2 0 0 0 0.00856 2 22884 22829;22884 89.401 60.906 1 14533000 21458 9568 14583 14861 25348;25349 25349 0.07156533216766547 HYALNTWLF 9 Unmodified _HYALNTWLF_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8368530273438 2 582.795466 1163.57638 NaN NaN NaN NaN NaN NaN NaN 83.333 1 83.396 82.896 83.896 0.063171 0 0 0 0.20498 1 46101 46101 30.225 21.632 1 21459 8037 14584 14862 25350 25350 0.0011344919719249447 HYALNTWLF 9 Unmodified _HYALNTWLF_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7959594726562 2 582.795466 1163.57638 NaN NaN NaN NaN NaN NaN NaN 83.478 1 83.542 83.042 84.042 0.063171 0 0 0 0.071041 1 46185 46185 50.855 25.456 1 21460 8037 14584 14862 25351 25351 0.0011344919719249447 HYALNTWLF 9 Unmodified _HYALNTWLF_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7938842773438 2 582.795466 1163.57638 0.47065 0.00027429 1.2697 0.00073997 1.7403 0.0010143 582.7956174178362 99.086 0.13317 92.91 92.824 92.957 -6.1757 17 7 3 0 0 0 0.038285 1 65871 65871 50.855 34.706 1 72666000 21461 8037 14584 14862 25352 25352 0.0011344919719249447 HYANLNGL 8 Unmodified _HYANLNGL_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;ENST00000507684.1_1_6:31976393-31978991:-|nuORF;nc|ENSG00000168477|P22105-2|TNXB nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.22998046875 2 451.229959 900.445365 0.72161 0.00032561 -0.18624 -8.4035E-05 0.53538 0.00024158 451.23011797251417 60.384 0.2235 60.341 60.192 60.415 -0.04351 18 10 2 0 0 0 0.80143 1 32911 32911 5.7604 0 1 10347000 21462 7769 14585 14863 25353 25353 -0.008839414508543086 HYAPLQAYL 9 Unmodified _HYAPLQAYL_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2825927734375 2 538.282192 1074.54983 -0.28901 -0.00015557 3.6177 0.0019473 3.3287 0.0017918 538.7864731523105 60.793 0.26555 60.303 60.129 60.395 -0.48932 25 12 3 0 0 0 0.027803 1 33090 33090 56.541 34.795 1 7563700 21463 9153 14586 14864 25354 25354 0.01553760305864671 HYAPLQAYL 9 Unmodified _HYAPLQAYL_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2798461914062 2 538.282192 1074.54983 0.6584 0.00035441 -2.5115 -0.0013519 -1.8531 -0.00099751 538.2789820445055 66.013 0.68486 59.837 59.613 60.298 -6.1757 47 39 2 0 0 0 0.027803 1 42886 42886 56.541 24.236 1 12684000 21464 9153 14586 14864 25355 25355 0.01553760305864671 HYASATLWVAF 11 Unmodified _HYASATLWVAF_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MSMS AL20221201_MKP_PDAC_01 4 633.3222045898438 2 633.319306 1264.62406 NaN NaN NaN NaN NaN NaN NaN 98.323 1 92.147 91.647 92.647 -6.1757 0 0 0 0.01198 1 65205 65205 74.929 56.783 1 21465 5215 14587 14865 25356 25356 0.002331033973632657 HYATLGRQF 9 Unmodified _HYATLGRQF_ 0 0 0 REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C REV__nc|ENSG00000135916|Q9NQX7-2|ITM2C MSMS AL20221201_MKP_PDAC_01 4 546.7826538085938 2 546.78289 1091.55123 NaN NaN NaN NaN NaN NaN NaN 72.715 1 66.539 66.039 67.039 -6.1757 0 0 0 0.6032 1 47570 47570 12.532 0 1 + 21466 20112 14588 14866 25357 25357 0.009113943946204017 HYATLYFVF 9 Unmodified _HYATLYFVF_ 0 0 0 nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN nc|ENSG00000157823|P59780-2|AP3S2 nc|ENSG00000157823|P59780-2|AP3S2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.792724609375 2 580.792392 1159.57023 NaN NaN NaN NaN NaN NaN NaN 87.156 1 87.214 86.714 87.714 0.05822 0 0 0 0.0233 1 48445 48445 74.396 48.997 1 21467 6542 14589 14867 25358 25358 -0.003170690343267779 HYATLYFVF 9 Unmodified _HYATLYFVF_ 0 0 0 nc|ENSG00000157823|P59780-2|AP3S2;ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF;ENSG00000177879|ENST00000316788|AP3S1;ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN nc|ENSG00000157823|P59780-2|AP3S2 nc|ENSG00000157823|P59780-2|AP3S2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7921752929688 2 580.792392 1159.57023 0.72392 0.00042045 -3.3149 -0.0019253 -2.5909 -0.0015048 580.7914550038628 99.575 0.23076 93.399 93.243 93.474 -6.1757 30 14 3 0 0 0 0.012158 1 66351 66351 74.396 42.279 1 116290000 21468 6542 14589 14867 25359 25359 -0.003170690343267779 HYAVFEETL 9 Unmodified _HYAVFEETL_ 0 0 0 nc|ENSG00000171204|Q8IUX1-5|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B nc|ENSG00000171204|Q8IUX1-5|TMEM126B nc|ENSG00000171204|Q8IUX1-5|TMEM126B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7702026367188 2 554.769114 1107.52368 0.46774 0.00025949 -0.27223 -0.00015103 0.19551 0.00010846 554.7703297578811 55.03 0.24852 55.03 54.852 55.101 0 17 10 2 0 0 0 0.045537 1 30548 30548 46.921 25.174 1 2234200 21469 8076 14590 14868 25360 25360 -0.025785536562807465 HYAYSFKYL 9 Unmodified _HYAYSFKYL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2937622070312 2 596.295299 1190.57605 NaN NaN NaN NaN NaN NaN NaN 50.472 1 50.062 49.562 50.562 -0.41027 0 0 0 0.043758 1 27179 27179 60.39 43.447 1 21470 2632 14591 14869 25361 25361 -0.01161970522662159 HYAYSFKYL 9 Unmodified _HYAYSFKYL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2938232421875 2 596.295299 1190.57605 1.273 0.00075906 -0.099134 -5.9113E-05 1.1738 0.00069995 596.2951808078683 50.133 0.26361 50.084 49.947 50.21 -0.048824 39 12 4 0 0 0 0.019303 1 27085 27085 64.236 43.783 1 10628000 21471 2632 14591 14869 25362 25362 -0.01161970522662159 HYAYSFKYL 9 Unmodified _HYAYSFKYL_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2949829101562 2 596.295299 1190.57605 0.66134 0.00039436 2.9205 0.0017415 3.5819 0.0021358 597.3021997465831 55.053 0.39337 49.132 48.956 49.35 -5.9211 45 24 3 0 0 0 0.0082661 1 34958 34958 92.491 59.706 1 23578000 21472 2632 14591 14869 25363 25363 -0.01161970522662159 HYCQTKSMY 9 Unmodified _HYCQTKSMY_ 0 0 0 REV__ENSG00000159596|ENST00000372025|TMEM69 REV__ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.4996337890625 3 387.500293 1159.47905 -0.42099 -0.00016313 0.81754 0.0003168 0.39655 0.00015366 387.5002177758248 21.389 0.36993 21.389 21.264 21.634 0 100 48 3 0 0 0 0.53666 1 10799 10799 2.9952 1.151 1 1454000 + 21473 21489 14592 14870 25364 25364 -0.09431024065611382 HYCQTKSMY 9 Unmodified _HYCQTKSMY_ 0 0 0 REV__ENSG00000159596|ENST00000372025|TMEM69 REV__ENSG00000159596|ENST00000372025|TMEM69 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.4996337890625 3 387.500293 1159.47905 -0.42099 -0.00016313 0.81754 0.0003168 0.39655 0.00015366 387.5002177758248 21.389 0.36993 21.389 21.264 21.634 0 100 48 3 0 0 0 0.21767 1 10799 10799 2.9952 1.151 1 1454000 + 21474 21489 14592 14870 25365 25365 -0.09431024065611382 HYDAKADLWS 10 Unmodified _HYDAKADLWS_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.783203125 2 603.28292 1204.55129 -0.69243 -0.00041773 -0.096893 -5.8454E-05 -0.78932 -0.00047619 603.2830070365944 30.707 0.30612 30.707 30.546 30.852 0 43 14 4 0 0 0 0.29752 2 15929 15929;16035 27.629 3.6082 1 14408000 21475 1362 14593 14871 25366;25367 25366 -0.04280650396049168 HYDAKADLWS 10 Unmodified _HYDAKADLWS_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2828979492188 2 603.28292 1204.55129 0.46385 0.00027983 0.16787 0.00010127 0.63172 0.0003811 603.2829140768243 30.721 0.26849 30.618 30.474 30.743 -0.10269 31 10 4 0 0 0 0.13391 1 15921 15921 41.84 11.203 1 15117000 21476 1362 14593 14871 25368 25368 -0.04280650396049168 HYDAKADLWS 10 Unmodified _HYDAKADLWS_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.7853393554688 2 603.28292 1204.55129 -0.19159 -0.00011558 0.60316 0.00036388 0.41157 0.00024829 603.2835902230314 30.468 0.19044 30.498 30.413 30.604 0.030104 14 8 3 0 0 0 0.46514 1 15935 15935 18.146 0 1 1444100 21477 1362 14593 14871 25369 25369 -0.04280650396049168 HYDAKADLWS 10 Unmodified _HYDAKADLWS_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2838134765625 2 603.28292 1204.55129 0.26179 0.00015793 -0.26182 -0.00015795 -2.7525E-05 -1.6605E-08 603.2826683802227 34.328 0.33031 30.275 30.132 30.462 -4.0523 32 18 2 0 0 0 0.13391 1 19784 19784 41.84 11.203 1 13463000 21478 1362 14593 14871 25370 25370 -0.04280650396049168 HYDAVEAEL 9 Unmodified _HYDAVEAEL_ 0 0 0 ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000145945|ENST00000648326|FAM50B ENSG00000071859|ENST00000393600|FAM50A ENSG00000071859|ENST00000393600|FAM50A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.742919921875 2 523.743096 1045.47164 0.42198 0.00022101 0.29017 0.00015197 0.71214 0.00037298 523.743194423009 39.924 0.34935 39.924 39.74 40.089 0 45 17 3 0 0 0 0.012148 2 21371 21371;21478 74.423 38.296 1 42066000 21479 1063 14594 14872 25371;25372 25371 -0.049277170700406714 HYDAVEAEL 9 Unmodified _HYDAVEAEL_ 0 0 0 ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000145945|ENST00000648326|FAM50B ENSG00000071859|ENST00000393600|FAM50A ENSG00000071859|ENST00000393600|FAM50A MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.743408203125 2 523.743096 1045.47164 0.84617 0.00044318 0.038701 2.0269E-05 0.88487 0.00046344 523.7431367505251 45.774 0.45135 40.819 40.598 41.049 -4.9549 78 29 3 0 0 0 0.012148 2 28074 28074;28218 74.423 38.296 1 69175000 21480 1063 14594 14872 25373;25374 25373 -0.049277170700406714 HYDAVEAEL 9 Unmodified _HYDAVEAEL_ 0 0 0 ENSG00000071859|ENST00000393600|FAM50A;ENST00000481619.5_1_X:153672624-153677371:+|nuORF;ENSG00000145945|ENST00000648326|FAM50B ENSG00000071859|ENST00000393600|FAM50A ENSG00000071859|ENST00000393600|FAM50A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.743096 1045.47164 0.28651 0.00015006 0.78601 0.00041167 1.0725 0.00056172 524.2451660603372 39.87 0.14474 39.875 39.791 39.936 0.0050583 -0.024708 0.00048738 NaN 74.423 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 521080 21481 1063 14594 14872 -0.049277170700406714 HYDEQQNFF 9 Unmodified _HYDEQQNFF_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN;ENST00000478787.1_1_10:102296230-102304880:+|nuORF ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2570190429688 2 614.256902 1226.49925 -0.064534 -3.964E-05 0.52729 0.00032389 0.46276 0.00028425 614.2577368017711 44.616 0.25638 44.616 44.455 44.712 0 27 13 3 0 0 0 0.0082485 1 24265 24265 96.285 73.136 1 16760000 21482 7434 14595 14873 25375 25375 -0.10493813809807762 HYDEQQNFF 9 Unmodified _HYDEQQNFF_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN;ENST00000478787.1_1_10:102296230-102304880:+|nuORF ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2567138671875 2 614.256902 1226.49925 0.96591 0.00059332 -0.20334 -0.00012491 0.76257 0.00046841 614.2566038821493 50.081 0.47498 44.541 44.316 44.791 -5.5391 58 30 3 0 0 0 0.0041763 2 31289 31289;31429 120.45 90.226 1 32678000 21483 7434 14595 14873 25376;25377 25376 -0.10493813809807762 HYDGRRVYP 9 Unmodified _HYDGRRVYP_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MSMS AL20221201_MKP_PDAC_01 4 388.1965942382812 3 388.19659 1161.56794 NaN NaN NaN NaN NaN NaN NaN 28.085 1 24.937 24.437 25.437 -3.1482 0 0 0 0.7453 1 15627 15627 4.897 1.0207 1 21484 4750 14596 14874 25378 25378 -0.006381047194281564 HYDHVLIEL 9 Unmodified _HYDHVLIEL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7984619140625 2 569.798206 1137.58186 0.096522 5.4998E-05 0.52407 0.00029862 0.62059 0.00035361 569.7985066259857 56.484 0.30237 56.484 56.284 56.586 0 24 13 2 0 0 0 0.34134 2 31349 31349;31466 21.747 10.923 1 4359500 21485 1177 14597 14875 25379;25380 25379 0.018571279890011283 HYDHVLIEL 9 Unmodified _HYDHVLIEL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7981567382812 2 569.798206 1137.58186 -0.022046 -1.2562E-05 0.77651 0.00044245 0.75446 0.00042989 569.7987837921984 56.779 0.3332 56.293 56.17 56.503 -0.48554 35 15 3 0 0 0 0.078314 1 30843 30843 42.095 27.256 1 3221400 21486 1177 14597 14875 25381 25381 0.018571279890011283 HYDPATEEF 9 Unmodified _HYDPATEEF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.733154296875 2 554.732729 1107.4509 0.048623 2.6973E-05 -0.67037 -0.00037188 -0.62175 -0.0003449 554.7323386314719 35.31 0.2538 35.31 35.146 35.4 0 31 12 3 0 0 0 0.012148 1 18637 18637 74.423 45.936 1 12086000 21487 1447 14598 14876 25382 25382 -0.0985230744972796 HYDPTINKW 9 Unmodified _HYDPTINKW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2872924804688 2 587.288005 1172.56146 -0.27776 -0.00016312 0.24149 0.00014182 -0.036271 -2.1302E-05 587.2882907000214 35.39 0.28849 35.39 35.246 35.534 0 26 14 2 0 0 0 0.033587 1 18772 18772 68.081 48.824 1 11696000 21488 8124 14599 14877 25383 25383 -0.01792042670808769 HYDPTINKW 9 Unmodified _HYDPTINKW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.286376953125 2 587.288005 1172.56146 -0.47611 -0.00027961 -0.47093 -0.00027657 -0.94704 -0.00055619 587.2880783567831 35.587 0.318 35.365 35.201 35.519 -0.2224 40 14 4 0 0 0 0.0020356 2 18611 18611;18711 157.8 127.16 1 20615000 21489 8124 14599 14877 25384;25385 25384 -0.01792042670808769 HYDPTINKW 9 Unmodified _HYDPTINKW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2869873046875 2 587.288005 1172.56146 0.78872 0.0004632 0.044732 2.6271E-05 0.83345 0.00048948 587.2878821272197 39.443 0.45957 34.992 34.734 35.194 -4.4509 93 27 4 0 0 0 1.719E-10 3 23270 23270;23395;23530 208.15 162.12 1 137130000 21490 8124 14599 14877 25386;25387;25388 25386 -0.01792042670808769 HYDPTINKW 9 Unmodified _HYDPTINKW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8612976074219 3 391.861096 1172.56146 1.1427 0.00044777 -0.04276 -1.6756E-05 1.0999 0.00043101 391.86111752308244 39.447 0.42744 34.996 34.766 35.194 -4.4509 48 25 2 0 0 0 0.01958 2 23287 23287;23409 63.961 50.442 1 38855000 21491 8124 14599 14877 25389;25390 25389 -0.01792042670808769 HYDPTINKW 9 Unmodified _HYDPTINKW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.288005 1172.56146 0.14301 8.3988E-05 -0.74419 -0.00043705 -0.60118 -0.00035307 587.2874279811948 35.309 0.18333 35.334 35.251 35.435 0.025555 0.064024 -0.00073483 NaN 208.15 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2296300 21492 8124 14599 14877 -0.01792042670808769 HYDPTVWGVW 10 Unmodified _HYDPTVWGVW_ 0 0 0 REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198838|ENST00000634891|RYR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5328369140625 3 420.532979 1258.57711 0.34359 0.00014449 0.54265 0.0002282 0.88624 0.00037269 420.5331627966052 52.922 0.41148 52.858 52.704 53.115 -0.063423 63 20 4 0 0 0 0.66652 1 28761 28761 6.6304 2.754 1 11299000 + 21493 24073 14600 14878 25391 25391 -0.04183756153770446 HYDQYTERM 9 Unmodified _HYDQYTERM_ 0 0 0 ENSG00000174428|ENST00000472837|GTF2IRD2B ENSG00000174428|ENST00000472837|GTF2IRD2B ENSG00000174428|ENST00000472837|GTF2IRD2B MSMS AL20221201_MKP_PDAC_01 4 414.8469848632812 3 414.845117 1241.51352 NaN NaN NaN NaN NaN NaN NaN 36.751 1 32.467 31.967 32.967 -4.2835 0 0 0 0.7243 1 21490 21490 5.2969 0 1 21494 8418 14601 14879 25392 25392 -0.09757484653187021 HYDRGCLLK 9 Unmodified _HYDRGCLLK_ 0 0 0 nc|ENSG00000163743|Q96PM5-8|RCHY1;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-2|RCHY1;ENSG00000163743|ENST00000324439|RCHY1;ENST00000514589.5_1_4:76416932-76439505:-|nuORF;nc|ENSG00000163743|Q96PM5-3|RCHY1;nc|ENSG00000163743|Q96PM5-4|RCHY1;nc|ENSG00000163743|Q96PM5-5|RCHY1 nc|ENSG00000163743|Q96PM5-8|RCHY1 nc|ENSG00000163743|Q96PM5-8|RCHY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2819213867188 2 552.784576 1103.5546 0.62407 0.00034498 1.2777 0.00070629 1.9018 0.0010513 552.785079486858 36.155 0.35334 36.155 35.937 36.29 0 26 17 2 0 0 0 0.2001 1 19076 19076 23.148 6.2061 1 9605200 21495 7061 14602 14880 25393 25393 0.006963211769743793 HYDVDINKE 9 Unmodified _HYDVDINKE_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7689819335938 2 566.767103 1131.51965 NaN NaN NaN NaN NaN NaN NaN 16.597 1 16.598 16.098 17.098 0.0010548 0 0 0 0.82396 1 8193 8193 4.756 0.81161 1 21496 5560 14603 14881 25394 25394 -0.04084643149985823 HYDYDQIWFHF 11 Unmodified _HYDYDQIWFHF_ 0 0 0 REV__ENSG00000135220|ENST00000251566|UGT2A3 REV__ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 785.842041015625 2 785.841133 1569.66771 1.0483 0.00082377 -0.88081 -0.00069217 0.16746 0.00013159 785.8405403373667 54.797 0.38985 48.932 48.713 49.103 -5.8653 72 23 4 0 0 0 0.71341 1 34727 34727 2.9952 0.26005 1 45497000 + 21497 20044 14604 14882 25395 25395 -0.0943333189616169 HYDYIDVEM 9 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ HYDYIDVEM(1) HYDYIDVEM(85) 0 0 1 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7449340820312 2 600.747521 1199.48049 -0.50909 -0.00030584 -0.63868 -0.00038368 -1.1478 -0.00068952 600.7467564401884 40.755 0.47897 40.755 40.545 41.024 0 114 43 3 0 0 0 0.0090851 3 21856 21856;21966;22079 85.357 65.995 1 99471000 21498 9833 14605 14883 25396;25397;25398 25396 1577 -0.11127111495875397 HYDYIDVEM 9 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ HYDYIDVEM(1) HYDYIDVEM(64) 0 0 1 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.7468872070312 2 600.747521 1199.48049 0.10475 6.293E-05 -3.4094 -0.0020482 -3.3046 -0.0019852 600.7456768347477 41.279 0.27058 40.975 40.776 41.047 -0.30304 20 12 2 0 0 0 0.019303 1 21822 21822 64.236 49.831 1 2707000 21499 9833 14605 14883 25399 25399 1577 -0.11127111495875397 HYDYIDVEM 9 Oxidation (M) _HYDYIDVEM(Oxidation (M))_ HYDYIDVEM(1) HYDYIDVEM(120) 0 0 1 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7481689453125 2 600.747521 1199.48049 -0.024345 -1.4625E-05 -0.21036 -0.00012637 -0.2347 -0.000141 600.7474907708336 46.991 0.50287 41.91 41.676 42.179 -5.0805 108 59 3 0 0 0 0.0048787 3 29140 29011;29140;29274 117.6 87.758 1 53810000 21500 9833 14605 14883 25400;25401;25402 25401 1577 -0.11127111495875397 HYDYIDVEM 9 Unmodified _HYDYIDVEM_ 0 0 0 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7509155273438 2 592.750064 1183.48558 -0.75813 -0.00044938 -0.32774 -0.00019427 -1.0859 -0.00064365 592.7499433387304 55.561 0.24133 55.561 55.389 55.631 0 25 10 3 0 0 0 0.019303 1 30824 30824 64.236 47.123 1 5713200 21501 9833 14605 14884 25403 25403 -0.09882807633266566 HYDYIDVEM 9 Unmodified _HYDYIDVEM_ 0 0 0 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000508415.1_1_4:7790587-7795535:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7504272460938 2 592.750064 1183.48558 1.6091 0.00095382 -1.0339 -0.00061285 0.57523 0.00034097 592.7498167667599 62.837 0.61448 56.661 56.422 57.036 -6.1757 78 31 4 0 0 0 0.0095811 2 40687 40539;40687 81.613 57.593 1 93608000 21502 9833 14605 14884 25404;25405 25405 -0.09882807633266566 HYECECICSM 10 Unmodified _HYECECICSM_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.2086791992188 2 609.208337 1216.40212 NaN NaN NaN NaN NaN NaN NaN 9.1477 1 9.0561 8.5561 9.5561 -0.09156 0 0 0 1.0061 1 4478 4478 0 0 1 21503 3344 14606 14885 25406 25406 -0.19742326668642818 HYEFPPHPL 9 Unmodified _HYEFPPHPL_ 0 0 0 REV__DNAJC5G|p.A41T|1|0.27|ENSG00000163793|chr2:27277761-27277761|G/A|missense_variant REV__DNAJC5G|p.A41T|1|0.27|ENSG00000163793|chr2:27277761-27277761|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2132263183594 3 379.522303 1135.54508 0.056188 2.1325E-05 -0.15911 -6.0386E-05 -0.10292 -3.9061E-05 379.5222275880427 17.697 0.16701 17.702 17.607 17.774 0.0050545 22 11 3 0 0 0 0.21889 1 8889 8889 0.26902 0 1 1160900 + 21504 16909 14607 14886 25407 25407 -0.01727123836917599 HYEFPPYA 8 Unmodified _HYEFPPYA_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF;ENST00000450418.1_1_3:4024502-4025426:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.23486328125 2 512.232168 1022.44978 0.24321 0.00012458 2.5979 0.0013307 2.8411 0.0014553 512.2335933167748 52.561 0.27862 52.561 52.423 52.702 0 17 12 2 0 0 0 0.77907 1 29130 29130 10.183 0.83596 1 4155000 21505 5007 14608 14887 25408 25408 -0.06054477027964822 HYEGAVVIL 9 Unmodified _HYEGAVVIL_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.77734375 2 500.776742 999.538931 0.37613 0.00018836 -1.0635 -0.00053258 -0.68738 -0.00034422 500.77625276683773 56.694 0.3361 56.694 56.564 56.9 0 22 14 2 0 0 0 0.038285 1 31540 31540 50.855 25.456 1 3344800 21506 7042 14609 14888 25409 25409 0.03914357931569157 HYENTRAQF 9 Unmodified _HYENTRAQF_ 0 0 0 ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7704467773438 2 583.272887 1164.53122 0.87832 0.0005123 1.7356 0.0010123 2.6139 0.0015246 583.2735552630625 47.981 0.48019 47.943 47.743 48.224 -0.038647 36 23 2 0 0 0 0.19298 1 25845 25845 13.508 6.7847 1 1799500 21507 6842 14610 14889 25410 25410 -0.04446401336008421 HYEQSKMF 8 Unmodified _HYEQSKMF_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2437744140625 2 535.242209 1068.46987 0.28124 0.00015053 1.5651 0.00083773 1.8464 0.00098826 535.2431178012833 88.058 0.29063 88.058 87.897 88.188 0 26 17 2 0 0 0 0.80624 1 48726 48726 2.8892 0 1 324240 21508 6514 14611 14890 25411 25411 -0.061630493596339875 HYESRCSNI 9 Unmodified _HYESRCSNI_ 0 0 0 REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2828979492188 2 554.745647 1107.47674 0.35588 0.00019742 -2.6263 -0.0014569 -2.2704 -0.0012595 554.7436964110324 70.363 0.19788 69.884 69.716 69.914 -0.47903 14 8 2 0 0 0 0.20139 1 38445 38445 10.824 2.2306 1 1154800 + 21509 18753 14612 14891 25412 25412 -0.07269736479065614 HYEVVAVR 8 Unmodified _HYEVVAVR_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.5374145507812 1 972.526141 971.518865 0.44289 0.00043072 -1.3355 -0.0012988 -0.89263 -0.00086811 972.5247246382152 74.154 0.53065 74.154 73.879 74.41 0 63 24 3 0 0 0 0.80232 1 41180 41180 5.2307 1.2863 1 7791600 + 21510 18723 14613 14892 25413 25413 0.03196606991616591 HYFDPQYFEF 10 Unmodified _HYFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 696.8004150390625 2 696.798403 1391.58225 -0.047502 -3.3099E-05 1.3189 0.000919 1.2714 0.0008859 696.7992806183527 78.721 0.33578 78.235 78.059 78.394 -0.48596 37 12 4 0 0 0 0.17714 2 43077 43077;43175 36.506 27.761 1 4120000 21511 1389 14614 14893 25414;25415 25414 -0.09787497081833862 HYFDPQYFEF 10 Unmodified _HYFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.799072265625 2 696.798403 1391.58225 0.40593 0.00028285 -0.13162 -9.171E-05 0.27432 0.00019114 696.79839311467 78.114 0.33719 78.166 78.011 78.348 0.052452 29 13 3 0 0 0 0.087043 1 43108 43108 49.554 37.314 1 8352600 21512 1389 14614 14893 25416 25416 -0.09787497081833862 HYFDPQYFEF 10 Unmodified _HYFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20221201_MKP_PDAC_01 4 697.2998046875 2 696.798403 1391.58225 0.80602 0.00056163 1.0142 0.0007067 1.8202 0.0012683 696.7991426729966 96.825 0.31502 90.649 90.472 90.787 -6.1757 64 18 5 0 0 0 0.0072789 2 64099 64099;64212 92.653 76.504 1 105820000 21513 1389 14614 14893 25417;25418 25417 -0.09787497081833862 HYFDPQYFEF 10 Unmodified _HYFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 696.798403 1391.58225 -0.017227 -1.2004E-05 3.4752 0.0024215 3.458 0.0024095 696.8015642742464 78.233 0.096329 78.233 78.172 78.268 0 0.021456 0.0036191 NaN 49.554 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 191920 21514 1389 14614 14893 -0.09787497081833862 HYFNTPFQL 9 Unmodified _HYFNTPFQL_ 0 0 0 ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.7881469726562 2 583.785099 1165.55564 1.3844 0.0008082 1.1326 0.0006612 2.517 0.0014694 583.7856860865321 71.358 0.35042 71.397 71.184 71.535 0.039024 28 15 2 0 0 0 0.042911 1 39241 39241 48.346 24.325 1 4797000 21515 9875 14615 14894 25419 25419 -0.020511411825054893 HYFNTPFQL 9 Unmodified _HYFNTPFQL_ 0 0 0 ENSG00000196850|ENST00000354300|PPTC7;ENST00000548721.1_1_12:110974844-110983893:-|nuORF ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.78515625 2 583.785099 1165.55564 0.3413 0.00019924 0.65899 0.00038471 1.0003 0.00058395 583.7855405644332 93.474 0.33017 87.298 87.139 87.469 -6.1757 35 21 2 0 0 0 0.015445 1 61875 61875 68.081 31.954 1 13882000 21516 9875 14615 14894 25420 25420 -0.020511411825054893 HYFQNTQGLIF 11 Unmodified _HYFQNTQGLIF_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.3416748046875 2 684.340769 1366.66699 0.75318 0.00051543 0.64537 0.00044165 1.3985 0.00095708 684.3409553099746 67.065 0.27878 67.083 66.939 67.218 0.018036 31 13 3 0 0 0 0.0111 1 36805 36805 82.529 57.13 1 3977400 21517 7752;4585 14616 14895 25421 25421 -0.0016812654521345394 HYFQNTQGLIF 11 Unmodified _HYFQNTQGLIF_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.3411865234375 2 684.340769 1366.66699 1.4893 0.0010192 1.2743 0.00087206 2.7636 0.0018913 684.3403897920492 89.287 0.35428 83.112 83.022 83.376 -6.1757 22 19 2 0 0 0 0.13384 1 58978 58978 55.503 27.874 1 9670000 21518 7752;4585 14616 14895 25422 25422 -0.0016812654521345394 HYFSKADHF 9 Unmodified _HYFSKADHF_ 0 0 0 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.51416015625 3 384.513807 1150.51959 NaN NaN NaN NaN NaN NaN NaN 24.016 1 24.016 23.516 24.516 0 0 0 0 0.57317 1 12257 12257 8.7454 4.801 1 21519 6584 14617 14896 25423 25423 -0.049645983593336496 HYFSKADHF 9 Unmodified _HYFSKADHF_ 0 0 0 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5139465332031 3 384.513807 1150.51959 0.91109 0.00035032 -0.42085 -0.00016182 0.49023 0.0001885 384.5136249725744 27.139 0.21323 24.102 23.985 24.199 -3.0365 16 10 2 0 0 0 0.015445 1 15014 15014 61.602 45.327 1 8732500 21520 6584 14617 14896 25424 25424 -0.049645983593336496 HYGCFRVRR 9 Unmodified _HYGCFRVRR_ 0 0 0 ENST00000374274.7_2_X:70280209-70280344:-|nuORF;ENST00000490561.6_1_X:70280209-70288156:-|nuORF ENST00000374274.7_2_X:70280209-70280344:-|nuORF ENST00000374274.7_2_X:70280209-70280344:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7689819335938 2 597.309084 1192.60361 -0.18828 -0.00011246 -1.1919 -0.00071194 -1.3802 -0.0008244 597.809949188601 33.238 0.15958 33.079 32.984 33.144 -0.15918 11 6 2 0 0 0 0.20727 1 17297 17297 7.9102 1.187 1 623630 21521 12441 14618 14897 25425 25425 0.015016542565717828 HYGCHSITTII 11 Unmodified _HYGCHSITTII_ 0 0 0 REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.5392761230469 3 415.541257 1243.60194 NaN NaN NaN NaN NaN NaN NaN 35.936 1 35.714 35.214 36.214 -0.2224 0 0 0 0.93598 1 18836 18836 5.4027 2.4075 1 + 21522 22465 14619 14898 25426 25426 -0.010114443427028164 HYGKVYLL 8 Unmodified _HYGKVYLL_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7818298339844 2 496.781828 991.549102 NaN NaN NaN NaN NaN NaN NaN 42.676 1 42.369 41.869 42.869 -0.30682 0 0 0 0.4637 1 22679 22679 44.407 18.066 1 21523 347 14620 14899 25427 25427 0.052989656568115606 HYGKVYLL 8 Unmodified _HYGKVYLL_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MSMS AL20221201_MKP_PDAC_01 4 496.7816467285156 2 496.781828 991.549102 NaN NaN NaN NaN NaN NaN NaN 46.519 1 41.439 40.939 41.939 -5.0805 0 0 0 0.53879 1 28756 28756 38.151 17.28 1 21524 347 14620 14899 25428 25428 0.052989656568115606 HYGLLFDEF 9 Unmodified _HYGLLFDEF_ 0 0 0 ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF ENSG00000055147|ENST00000351797|FAM114A2 ENSG00000055147|ENST00000351797|FAM114A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7730102539062 2 570.771657 1139.52876 0.35249 0.00020119 0.51229 0.0002924 0.86478 0.00049359 570.7716805121521 83.609 0.31796 83.609 83.474 83.792 0 27 16 3 0 0 0 0.25297 1 46351 46351 19.439 15.843 1 552580 21525 774 14621 14900 25429 25429 -0.035422497936679065 HYGLLFDEF 9 Unmodified _HYGLLFDEF_ 0 0 0 ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF ENSG00000055147|ENST00000351797|FAM114A2 ENSG00000055147|ENST00000351797|FAM114A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.772216796875 2 570.771657 1139.52876 0.67328 0.00038429 -0.41448 -0.00023658 0.2588 0.00014771 570.7714354372214 84.057 0.38803 83.557 83.365 83.753 -0.49961 36 16 3 0 0 0 0.095049 2 46051 45954;46051 34.187 28.957 1 2429300 21526 774 14621 14900 25430;25431 25431 -0.035422497936679065 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2522583007812 2 542.253966 1082.49338 -1.1427 -0.00061965 -0.21882 -0.00011866 -1.3615 -0.0007383 542.2537986096136 32.475 0.2842 32.475 32.374 32.658 0 37 17 3 0 0 0 0.078546 1 16949 16949 112.59 45.249 1 30485000 21527 9407;6214 14622 14901 25432 25432 -0.04456867530825548 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8373107910156 3 361.838403 1082.49338 -1.2735 -0.00046081 -0.44687 -0.0001617 -1.7204 -0.00062251 361.83830397756265 32.498 0.16478 32.498 32.454 32.618 0 17 10 3 0 0 0 0.50586 1 16991 16991 34.102 26.813 1 3979900 21528 9407;6214 14622 14901 25433 25433 -0.04456867530825548 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2531127929688 2 542.253966 1082.49338 -0.37324 -0.00020239 0.21579 0.00011701 -0.15745 -8.5378E-05 542.2539584733623 32.51 0.33061 32.38 32.199 32.53 -0.12915 44 14 4 0 0 0 0.3408 2 16875 16875;16984 50.855 8.7605 1 19819000 21529 9407;6214 14622 14901 25434;25435 25434 -0.04456867530825548 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2550659179688 2 542.253966 1082.49338 -0.14717 -7.9804E-05 0.31627 0.0001715 0.1691 9.1695E-05 542.254309408201 32.361 0.16179 32.39 32.279 32.44 0.029743 11 6 2 0 0 0 0.48669 1 16979 16979 36.044 9.1605 1 1255800 21530 9407;6214 14622 14901 25436 25436 -0.04456867530825548 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2545166015625 2 542.253966 1082.49338 0.74225 0.00040249 0.069189 3.7518E-05 0.81144 0.00044001 542.2540267776799 36.157 0.47584 31.964 31.709 32.185 -4.1928 56 28 2 0 0 0 0.098639 3 21078 20948;21078;21215 100.37 42.9 1 106880000 21531 9407;6214 14622 14901 25437;25438;25439 25438 -0.04456867530825548 HYGRFQEF 8 Unmodified _HYGRFQEF_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8388061523438 3 361.838403 1082.49338 1.565 0.00056628 -0.97601 -0.00035316 0.58901 0.00021313 361.83814857378286 36.161 0.34788 31.968 31.77 32.118 -4.1928 46 20 3 0 0 0 0.46494 2 21014 21014;21143 34.102 20.196 1 19582000 21532 9407;6214 14622 14901 25440;25441 25440 -0.04456867530825548 HYGSKNTHSA 10 Unmodified _HYGSKNTHSA_ 0 0 0 REV__ENSG00000134243|ENST00000256637|SORT1 REV__ENSG00000134243|ENST00000256637|SORT1 MSMS AL20221201_MKP_PDAC_01 4 551.257568359375 2 551.257237 1100.49992 NaN NaN NaN NaN NaN NaN NaN 29.036 1 25.735 25.235 26.235 -3.3016 0 0 0 0.59691 1 16256 16256 21.537 2.28 1 + 21533 19964 14623 14902 25442 25442 -0.04630974370070362 HYGSVVTY 8 Unmodified _HYGSVVTY_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF;nc|ENSG00000197721|Q2VPA4-3|CR1L;ENSG00000197721|ENST00000508064|CR1L nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2242736816406 2 463.224342 924.434132 0.66593 0.00030848 -0.27507 -0.00012742 0.39086 0.00018106 463.22415359711755 49.847 0.37254 49.454 49.277 49.65 -0.3923 42 18 3 0 0 0 0.61462 1 26771 26771 24.674 1.5255 1 17523000 21534 10220 14624 14903 25443 25443 -0.03110763544987094 HYGVGERLHRH 11 Unmodified _HYGVGERLHRH_ 0 0 0 chr2:219296345-219296749|51|25.96|0.55|5.56|-|2|PTPRN,PTPRN|1 chr2:219296345-219296749|51|25.96|0.55|5.56|-|2|PTPRN,PTPRN|1 chr2:219296345-219296749|51|25.96|0.55|5.56|-|2|PTPRN,PTPRN|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2379150390625 3 454.23756 1359.69085 -0.65663 -0.00029827 -0.27712 -0.00012588 -0.93375 -0.00042414 454.2373509327366 14.676 0.084618 14.645 14.605 14.69 -0.030868 56 21 3 0 0 0 0.72952 1 7149 7149 0.50596 0 1 1877800 21535 107 14625 14904 25444 25444 0.025391517318439583 HYHEHGSLY 9 Unmodified _HYHEHGSLY_ 0 0 0 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5069580078125 3 381.505312 1141.49411 1.0178 0.0003883 3.6457 0.0013909 4.6635 0.0017792 381.5069756168141 17.927 0.1792 15.34 15.26 15.439 -2.5866 17 12 2 0 0 0 0.53557 1 9407 9407 5.2969 3.0141 1 1940900 21536 5167 14626 14905 25445 25445 -0.07098072881740336 HYHEPSNLVF 10 Unmodified _HYHEPSNLVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7984008789062 2 621.798737 1241.58292 0.38207 0.00023757 -0.34582 -0.00021503 0.036247 2.2538E-05 621.7985303629239 43.271 0.19849 43.271 43.143 43.341 0 13 9 2 0 0 0 0.35903 1 23509 23509 24.021 13.197 1 3977800 21537 4951 14627 14906 25446 25446 -0.02820657642109836 HYHEPSNLVF 10 Unmodified _HYHEPSNLVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.7999267578125 2 621.798737 1241.58292 0.88541 0.00055054 -0.85094 -0.00052911 0.034465 2.1431E-05 621.7989300558519 47.311 0.37433 42.231 42.073 42.448 -5.0805 32 23 2 0 0 0 0.0575 2 29325 29325;29463 56.177 35.723 1 16915000 21538 4951 14627 14906 25447;25448 25447 -0.02820657642109836 HYHEPSNLVF 10 Unmodified _HYHEPSNLVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 414.8687133789062 3 414.86825 1241.58292 NaN NaN NaN NaN NaN NaN NaN 47.342 1 42.261 41.761 42.761 -5.0805 0 0 0 0.3465 1 29376 29376 23.801 14.825 1 21539 4951 14627 14906 25449 25449 -0.02820657642109836 HYHEPSNLVF 10 Unmodified _HYHEPSNLVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.798737 1241.58292 0.18905 0.00011755 0.41058 0.0002553 0.59964 0.00037285 621.7990047421106 43.409 0.13954 43.098 43.025 43.164 -0.31039 -0.086517 0.00070771 NaN 24.021 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 5682900 21540 4951 14627 14906 -0.02820657642109836 HYHETQINF 9 Unmodified _HYHETQINF_ 0 0 0 ENST00000341772.4_1_2:230222916-230223054:-|nuORF ENST00000341772.4_1_2:230222916-230223054:-|nuORF ENST00000341772.4_1_2:230222916-230223054:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.775390625 2 594.775262 1187.53597 NaN NaN NaN NaN NaN NaN NaN 25.074 1 25.057 24.557 25.557 -0.017006 0 0 0 0.84369 1 12831 12831 2.3027 0 1 21541 11973 14628 14907 25450 25450 -0.050295171932248195 HYHPIVQRF 9 Unmodified _HYHPIVQRF_ 0 0 0 ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5498657226562 3 399.548964 1195.62506 0.080459 3.2147E-05 0.65664 0.00026236 0.7371 0.00029451 399.549201177027 27.419 0.24635 27.448 27.351 27.598 0.028662 20 10 3 0 0 0 0.2143 1 14242 14242 15.248 12.513 1 10831000 21542 8290 14629 14908 25451 25451 0.03507362556933913 HYHPIVQRF 9 Unmodified _HYHPIVQRF_ 0 0 0 ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5494079589844 3 399.548964 1195.62506 1.0296 0.00041137 0.7645 0.00030546 1.7941 0.00071683 399.88351394621213 31.007 0.28095 27.51 27.321 27.602 -3.497 22 12 2 0 0 0 0.0094915 1 17496 17496 62.573 50.332 1 45643000 21543 8290 14629 14908 25452 25452 0.03507362556933913 HYHPSNARF 9 Unmodified _HYHPSNARF_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS AL20221201_MKP_PDAC_01 4 376.84912109375 3 376.849302 1127.52608 NaN NaN NaN NaN NaN NaN NaN 17.132 1 14.546 14.046 15.046 -2.5866 0 0 0 0.54558 1 8932 8932 14.405 5.0223 1 21544 2536 14630 14909 25453 25453 -0.03258660407959724 HYHRRRRRRRR 11 Unmodified _HYHRRRRRRRR_ 0 0 0 REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF REV__ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 853.00390625 2 853.007579 1704.00061 NaN NaN NaN NaN NaN NaN NaN 85.901 1 85.963 85.463 86.463 0.061638 0 0 0 0.9435 1 47560 47560 0 0 1 + 21545 25664 14631 14910 25454 25454 0.17676489581958776 HYIDAGYLGF 10 Unmodified _HYIDAGYLGF_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7798461914062 2 578.277106 1154.53966 0.47036 0.000272 -0.0083264 -4.815E-06 0.46203 0.00026718 578.7789530092859 67.591 0.21611 67.591 67.459 67.675 0 16 10 2 0 0 0 0.55245 1 37688 37688 21.747 14.457 1 1249800 21546 3095 14632 14911 25455 25455 -0.03142847419394457 HYIDAGYLGF 10 Unmodified _HYIDAGYLGF_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2769775390625 2 578.277106 1154.53966 NaN NaN NaN NaN NaN NaN NaN 68.178 1 67.696 67.196 68.196 -0.48218 0 0 0 0.18903 1 37258 37258 61.357 43.222 1 21547 3095 14632 14911 25456 25456 -0.03142847419394457 HYIDAGYLGF 10 Unmodified _HYIDAGYLGF_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.27734375 2 578.277106 1154.53966 1.02 0.00058982 1.091 0.00063088 2.1109 0.0012207 578.2773335311593 83.54 0.7162 77.365 76.964 77.68 -6.1757 76 37 3 0 0 0 0.078742 3 54925 54792;54925;55050 71.134 45.734 1 11270000 21548 3095 14632 14911 25457;25458;25459 25458 -0.03142847419394457 HYIDAGYLGF 10 Unmodified _HYIDAGYLGF_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.27783203125 2 578.277106 1154.53966 0.8863 0.00051253 0.98193 0.00056783 1.8682 0.0010804 578.2774921307578 84.018 0.52995 77.842 77.625 78.155 -6.1757 63 28 3 0 0 0 0.047829 2 55172 55172;55303 81.613 57.823 1 11498000 21549 3095 14632 14911 25460;25461 25460 -0.03142847419394457 HYIDAGYLGF 10 Unmodified _HYIDAGYLGF_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MSMS AL20221201_MKP_PDAC_01 4 578.2779541015625 2 578.277106 1154.53966 NaN NaN NaN NaN NaN NaN NaN 84.486 1 78.31 77.81 78.81 -6.1757 0 0 0 0.61655 1 55582 55582 24.021 4.6586 1 21550 3095 14632 14911 25462 25462 -0.03142847419394457 HYIDDLVVI 9 Unmodified _HYIDDLVVI_ 0 0 0 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7947387695312 2 543.795132 1085.57571 0.33858 0.00018412 -0.54331 -0.00029545 -0.20473 -0.00011133 543.7949214042786 72.636 0.3164 72.636 72.433 72.749 0 24 13 2 0 0 0 0.03327 1 40412 40412 53.576 38.737 1 1933400 21551 4875 14633 14912 25463 25463 0.03634609757477847 HYIDSLNRQKS 11 Unmodified _HYIDSLNRQKS_ 0 0 0 ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6;ENST00000490187.1_1_20:25205773-25206230:+|nuORF;ENST00000463734.1_1_20:25204516-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2366638183594 3 454.237114 1359.68951 -0.22781 -0.00010348 0.47658 0.00021648 0.24878 0.000113 454.23729098853994 14.668 0.068375 14.668 14.624 14.692 0 47 18 3 0 0 0 0.72952 1 6976 6976 0.50596 0 1 2228400 21552 9975 14634 14913 25464 25464 0.024054728524106395 HYIDSLNRQKS 11 Unmodified _HYIDSLNRQKS_ 0 0 0 ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6;ENST00000490187.1_1_20:25205773-25206230:+|nuORF;ENST00000463734.1_1_20:25204516-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 454.237114 1359.68951 -0.22781 -0.00010348 0.47658 0.00021648 0.24878 0.000113 454.23729098853994 14.668 0.068375 14.668 14.624 14.692 0 0.022188 -7.3382E-05 NaN 0.50596 47 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2228400 21553 9975 14634 14913 0.024054728524106395 HYIDSLNRQKS 11 Unmodified _HYIDSLNRQKS_ 0 0 0 ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6;ENST00000490187.1_1_20:25205773-25206230:+|nuORF;ENST00000463734.1_1_20:25204516-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 454.237114 1359.68951 -0.65663 -0.00029827 0.70431 0.00031992 0.047677 2.1657E-05 454.2373509327366 14.676 0.084618 14.645 14.605 14.69 -0.030868 -0.0012665 0.00023694 NaN 0.50596 56 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1877800 21554 9975 14634 14913 0.024054728524106395 HYIDSLNRQKS 11 Unmodified _HYIDSLNRQKS_ 0 0 0 ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6;ENST00000490187.1_1_20:25205773-25206230:+|nuORF;ENST00000463734.1_1_20:25204516-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 454.237114 1359.68951 0.37179 0.00016888 -0.63591 -0.00028885 -0.26412 -0.00011997 454.57111435748175 14.618 0.10211 14.625 14.581 14.683 0.0073986 -0.020922 -0.0015894 NaN 0.50596 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1116000 21555 9975 14634 14913 0.024054728524106395 HYIEEMYQYI 10 Unmodified _HYIEEMYQYI_ 0 0 0 REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.5455627441406 3 463.544556 1387.61184 NaN NaN NaN NaN NaN NaN NaN 17.343 1 17.357 16.857 17.857 0.013865 0 0 0 1.0019 1 8617 8617 0.15932 0.064481 1 + 21556 17651 14635 14914 25465 25465 -0.0664630112796658 HYIEEMYQYI 10 Unmodified _HYIEEMYQYI_ 0 0 0 REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.5447692871094 3 463.544556 1387.61184 0.59091 0.00027391 2.246 0.0010411 2.8369 0.001315 463.54551159491007 18.108 0.2321 15.487 15.301 15.534 -2.6215 25 16 2 0 0 0 0.70951 1 9435 9435 0.77653 0.27058 1 5214900 + 21557 17651 14635 14914 25466 25466 -0.0664630112796658 HYIEGLGKQF 10 Unmodified _HYIEGLGKQF_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.8764038085938 3 397.876746 1190.60841 -0.21452 -8.5351E-05 0.81903 0.00032587 0.60451 0.00024052 397.87695495080106 32.704 0.19379 32.575 32.459 32.652 -0.12915 13 7 2 0 0 0 0.42068 1 17036 17036 12.873 0 1 1772400 21558 8394 14636 14915 25467 25467 0.020728168803316294 HYIERIQKL 9 Unmodified _HYIERIQKL_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.569091796875 3 400.568024 1198.68224 0.56267 0.00022539 0.46159 0.0001849 1.0243 0.00041029 400.5683338443847 27.776 0.18675 27.73 27.66 27.846 -0.046408 15 8 2 0 0 0 0.013609 1 14323 14323 70.332 22.6 1 4929600 21559 2474 14637 14916 25468 25468 0.0908478504265986 HYIERIQKL 9 Unmodified _HYIERIQKL_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5687255859375 3 400.568024 1198.68224 NaN NaN NaN NaN NaN NaN NaN 27.731 1 27.76 27.26 28.26 0.029564 0 0 0 0.83812 1 14419 14419 2.9952 1.0889 1 21560 2474 14637 14916 25469 25469 0.0908478504265986 HYIERIQKL 9 Unmodified _HYIERIQKL_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5674743652344 3 400.568024 1198.68224 0.64417 0.00025803 -0.22243 -8.9097E-05 0.42174 0.00016894 400.5679116588491 31.671 0.29946 27.975 27.823 28.122 -3.6958 19 15 2 0 0 0 0.010362 1 17915 17915 79.427 35.445 1 38439000 21561 2474 14637 14916 25470 25470 0.0908478504265986 HYIFVTGVKF 10 Unmodified _HYIFVTGVKF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;ENST00000515070.1_1_17:48741105-48741487:+|nuORF;ENST00000571855.1_1_17:48740997-48741507:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8333129882812 2 605.834591 1209.65463 0.29832 0.00018073 -1.4432 -0.00087435 -1.1449 -0.00069361 605.8336786422994 62.345 0.31493 62.312 62.16 62.475 -0.032787 29 16 3 0 0 0 0.0015998 1 34081 34081 110.55 68.713 1 11789000 21562 2613 14638 14917 25471 25471 0.058188817823975114 HYIFVTGVKF 10 Unmodified _HYIFVTGVKF_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;ENST00000515070.1_1_17:48741105-48741487:+|nuORF;ENST00000571855.1_1_17:48740997-48741507:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8348388671875 2 605.834591 1209.65463 0.58649 0.00035531 -1.2977 -0.00078619 -0.71121 -0.00043088 606.3349970691108 90.415 0.53428 84.239 84.074 84.608 -6.1757 51 31 2 0 0 0 0.003386 2 59689 59689;59832 103.42 61.58 1 21445000 21563 2613 14638 14917 25472;25473 25472 0.058188817823975114 HYIHSSETL 9 Unmodified _HYIHSSETL_ 0 0 0 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-2|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7655639648438 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 21.311 1 21.311 20.811 21.811 0 0 0 0 0.7243 1 10773 10773 8.5933 1.304 1 21564 10514 14639 14918 25474 25474 -0.025163219417891014 HYIHSSETL 9 Unmodified _HYIHSSETL_ 0 0 0 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;nc|ENSG00000214944|Q8N1W1-2|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MSMS AL20221201_MKP_PDAC_01 4 543.7638549804688 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 24.726 1 21.842 21.342 22.342 -2.8831 0 0 0 0.020569 1 13480 13480 117.6 75.504 1 21565 10514 14639 14918 25475 25475 -0.025163219417891014 HYIIRVVSF 9 Unmodified _HYIIRVVSF_ 0 0 0 ENST00000409714.7_1_2:170460711-170470975:+|nuORF ENST00000409714.7_1_2:170460711-170470975:+|nuORF ENST00000409714.7_1_2:170460711-170470975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3277587890625 2 567.326934 1132.63931 0.8504 0.00048245 0.30293 0.00017186 1.1533 0.00065431 567.3269880471278 56.907 0.33675 56.838 56.638 56.975 -0.068737 40 16 4 0 0 0 0.040733 1 30964 30964 45.7 34.059 1 10789000 21566 12964 14640 14919 25476 25476 0.07830014985233902 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.29345703125 2 589.293091 1176.57163 0.16759 9.8762E-05 -0.6133 -0.00036141 -0.4457 -0.00026265 589.2931030430368 54.241 0.25611 53.775 53.626 53.882 -0.46664 36 12 4 0 0 0 0.013041 1 29346 29346 71.922 47.248 1 12873000 21567 7043 14641 14920 25477 25477 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1985778808594 3 393.197819 1176.57163 0.21515 8.4597E-05 -0.033167 -1.3041E-05 0.18198 7.1556E-05 393.1979155020384 54.233 0.19436 53.767 53.646 53.841 -0.46664 24 9 3 0 0 0 0.078417 1 29368 29368 27.629 23.752 1 3205300 21568 7043 14641 14920 25478 25478 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2932739257812 2 589.293091 1176.57163 -0.18571 -0.00010944 -0.2902 -0.00017101 -0.47591 -0.00028045 589.2928677560793 53.859 0.81778 53.792 53.563 54.38 -0.066936 143 46 5 0 0 0 0.0090851 5 29339 29126;29237;29339;29442;29546 85.357 66.1 1 413950000 21569 7043 14641 14920 25479;25480;25481;25482;25483 25481 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5301818847656 3 393.197819 1176.57163 -0.35488 -0.00013954 0.65344 0.00025693 0.29856 0.00011739 393.1980264495057 53.835 0.51264 53.768 53.609 54.122 -0.066936 81 29 4 0 0 0 0.078417 3 29156 29156;29260;29378 27.629 22.732 1 100160000 21570 7043 14641 14920 25484;25485;25486 25484 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2922973632812 2 589.293091 1176.57163 0.82147 0.00048409 -0.65355 -0.00038513 0.16793 9.8958E-05 589.2925122509964 59.785 0.35626 53.67 53.496 53.852 -6.1147 32 20 2 0 0 0 0.0004779 2 38380 38380;38523 144.35 111.9 1 45260000 21571 7043 14641 14920 25487;25488 25487 -0.009594349455710471 HYILHNSFF 9 Unmodified _HYILHNSFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1978759765625 3 393.197819 1176.57163 1.2588 0.00049495 0.59064 0.00023224 1.8494 0.00072719 393.1981267419905 88.817 0.71372 82.641 82.206 82.92 -6.1757 131 39 4 0 0 0 0.078417 4 58395 58395;58518;58637;58764 27.629 27.629 1 142730000 21572 7043 14641 14920 25489;25490;25491;25492 25489 -0.009594349455710471 HYILNYLF 8 Unmodified _HYILNYLF_ 0 0 0 ENST00000367521.5_1_1:183906707-183906932:-|nuORF ENST00000367521.5_1_1:183906707-183906932:-|nuORF ENST00000367521.5_1_1:183906707-183906932:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3240966796875 2 541.78711 1081.55967 0.24391 0.00013215 0.70022 0.00037937 0.94413 0.00051152 541.7882388961162 48.955 0.52509 48.912 48.609 49.134 -0.04369 45 25 3 0 0 0 8.7369 1 26317 26317 11.114 2.5212 1 2749300 21573 12239 14642 14921 25493 25493 0.02214948311234366 HYINILSRL 9 Unmodified _HYINILSRL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.82958984375 2 564.82984 1127.64513 0.63121 0.00035653 -0.066742 -3.7698E-05 0.56447 0.00031883 564.8299067502113 60.986 0.27952 60.943 60.784 61.064 -0.043507 28 13 3 0 0 0 0.0093064 1 33254 33254 83.429 43.479 1 3726900 21574 2778 14643 14922 25494 25494 0.08641113496878461 HYINMPVQF 9 Unmodified _HYINMPVQF_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF;ENST00000513183.1_1_18:13124610-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8072509765625 2 574.781502 1147.54845 0.70744 0.00040663 -0.12185 -7.0035E-05 0.5856 0.00033659 574.781600835503 64.915 0.2594 64.915 64.718 64.978 7.6294E-06 18 12 2 0 0 0 0.19613 1 35515 35515 12.532 1.4171 1 1694800 21575 1983 14644 14923 25495 25495 -0.01942197054540884 HYINYKVHF 9 Unmodified _HYINYKVHF_ 0 0 0 ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5448913574219 3 407.545219 1219.61383 -0.29845 -0.00012163 0.77879 0.00031739 0.48033 0.00019576 407.545537054999 36.897 0.21926 36.647 36.554 36.773 -0.2497 16 9 2 0 0 0 0.078417 1 19387 19387 34.402 25.957 1 3222900 21576 12120 14645 14924 25496 25496 0.012805404627897587 HYINYKVHF 9 Unmodified _HYINYKVHF_ 0 0 0 ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5424194335938 3 407.545219 1219.61383 -0.47994 -0.0001956 0.049747 2.0274E-05 -0.43019 -0.00017532 407.54524630266576 36.577 0.29315 36.598 36.434 36.727 0.021545 28 13 3 0 0 0 0.023164 1 19348 19348 53.833 43.682 1 13168000 21577 12120 14645 14924 25497 25497 0.012805404627897587 HYINYKVHF 9 Unmodified _HYINYKVHF_ 0 0 0 ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF ENST00000357997.9_1_12:133331595-133331631:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5452880859375 3 407.545219 1219.61383 0.32975 0.00013439 -0.026058 -1.062E-05 0.30369 0.00012377 407.5452507953988 41.364 0.18927 36.756 36.612 36.801 -4.6079 16 11 2 0 0 0 0.0090851 1 24832 24832 66.457 58.301 1 8153300 21578 12120 14645 14924 25498 25498 0.012805404627897587 HYIPRAVLL 9 Unmodified _HYIPRAVLL_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENSG00000131462|ENST00000251413|TUBG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.78662109375 2 541.329476 1080.6444 0.35768 0.00019363 -1.3817 -0.00074796 -1.024 -0.00055434 541.3287406188483 49.285 0.24997 48.913 48.734 48.984 -0.37172 16 11 2 0 0 0 0.17275 1 26445 26445 21.747 10.923 1 1084600 21579 625;13067;15673 14646 14925 25499 25499 0.1073031884784541 HYIPRAVLL 9 Unmodified _HYIPRAVLL_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.329833984375 2 541.329476 1080.6444 1.0657 0.0005769 -0.27121 -0.00014681 0.79451 0.00043009 541.3293584121008 86.466 0.80743 80.291 79.76 80.567 -6.1757 115 43 3 0 0 0 0.019303 1 56961 56961 64.236 24.279 1 41586000 21580 625;13067;15673 14646 14925 25500 25500 0.1073031884784541 HYIRKYNRF 9 Unmodified _HYIRKYNRF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.9039306640625 3 432.903518 1295.68872 0.20378 8.8218E-05 -0.19655 -8.5088E-05 0.0072301 3.1299E-06 432.9034834902774 17.13 0.22367 17.135 17.045 17.269 0.0050564 41 16 4 0 0 0 0.11784 1 8618 8618 31.268 18.412 1 5062900 21581 5423 14647 14926 25501 25501 0.05270722994009702 HYIRKYNRF 9 Unmodified _HYIRKYNRF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9038391113281 3 432.903518 1295.68872 0.96714 0.00041868 -0.96176 -0.00041635 0.0053841 2.3308E-06 432.90322715508074 18.923 0.5405 16.301 16.106 16.647 -2.6215 104 35 5 0 0 0 0.1685 3 9936 9936;10036;10137 26.268 17.024 1 39877000 21582 5423 14647 14926 25502;25503;25504 25502 0.05270722994009702 HYIRSPPQ 8 Unmodified _HYIRSPPQ_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2;ENST00000504704.6_1_4:159690364-159754995:+|nuORF nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2645874023438 2 499.264333 996.514114 -0.12731 -6.356E-05 0.95396 0.00047628 0.82665 0.00041272 499.2649271615055 38.111 0.35397 37.839 37.638 37.992 -0.27133 34 16 3 0 0 0 0.75262 1 20045 20045 12.532 3.1484 1 4025500 21583 740 14648 14927 25505 25505 0.01571722848848367 HYIRSPPQ 8 Unmodified _HYIRSPPQ_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2;ENST00000504704.6_1_4:159690364-159754995:+|nuORF nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.264333 996.514114 0.27989 0.00013974 0.92926 0.00046395 1.2092 0.00060369 499.2648715844372 37.745 0.18356 37.745 37.662 37.846 0 -0.047045 -1.7086E-05 NaN 12.532 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 865530 21584 740 14648 14927 0.01571722848848367 HYKGGRHMREH 11 Unmodified _HYKGGRHMREH_ 0 0 0 REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2320251464844 3 469.898549 1406.67382 0.3364 0.00015808 -0.07756 -3.6445E-05 0.25884 0.00012163 470.2327860019496 31.115 0.27174 31.012 30.864 31.136 -0.10269 30 10 4 0 0 0 0.68777 1 16139 16139 5.4027 0.35519 1 8535100 + 21585 26961 14649 14928 25506 25506 -0.013250921456119613 HYKHESWLL 9 Unmodified _HYKHESWLL_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8776550292969 3 404.876857 1211.60874 0.49888 0.00020198 0.4034 0.00016333 0.90228 0.00036531 404.87713557252135 40.374 0.27332 40.077 39.903 40.177 -0.29716 30 12 3 0 0 0 0.34134 1 21315 21315 15.248 8.2114 1 3561800 21586 6432 14650 14929 25507 25507 0.01140236600190292 HYKHESWLL 9 Unmodified _HYKHESWLL_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8774108886719 3 404.876857 1211.60874 1.5181 0.00061464 -0.39598 -0.00016032 1.1221 0.00045432 404.87655509630696 90.682 0.25291 84.506 84.355 84.608 -6.1757 22 14 2 0 0 0 0.46162 1 59914 59914 9.544 1.935 1 16470000 21587 6432 14650 14929 25508 25508 0.01140236600190292 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3052978515625 2 583.305667 1164.59678 0.49319 0.00028768 -0.14289 -8.335E-05 0.3503 0.00020433 583.3053939219894 47.985 0.37529 47.632 47.474 47.85 -0.3526 46 18 3 0 0 0 0.028475 2 25710 25710;25813 56.177 43.135 1 75084000 21588 3003 14651 14930 25509;25510 25509 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3063354492188 2 583.305667 1164.59678 0.94094 0.00054886 -0.5839 -0.00034059 0.35704 0.00020826 583.3052431145619 47.669 0.51082 47.63 47.477 47.988 -0.038643 92 24 5 0 0 0 0.020973 2 25772 25670;25772 62.573 42.119 1 188600000 21589 3003 14651 14930 25511;25512 25512 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2062377929688 3 389.206203 1164.59678 0.42456 0.00016524 -0.53591 -0.00020858 -0.11134 -4.3336E-05 389.206227315142 47.714 0.24664 47.675 47.581 47.827 -0.038647 26 11 3 0 0 0 0.16226 1 25719 25719 24.991 17.382 1 3344200 21590 3003 14651 14930 25513 25513 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3059692382812 2 583.305667 1164.59678 0.7108 0.00041461 0.24865 0.00014504 0.95945 0.00055965 583.3057423764724 52.4 0.62745 46.666 46.363 46.99 -5.7345 114 36 4 0 0 0 0.020973 3 32900 32900;33029;33149 62.573 42.119 1 742890000 21591 3003 14651 14930 25514;25515;25516 25514 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.54052734375 3 389.206203 1164.59678 1.1301 0.00043984 -0.36245 -0.00014107 0.76766 0.00029878 389.54035465642335 52.433 0.23782 46.699 46.598 46.836 -5.7345 18 12 2 0 0 0 0.070838 1 33108 33108 29.841 19.041 1 23385000 21592 3003 14651 14930 25517 25517 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3065185546875 2 583.305667 1164.59678 1.0504 0.00061269 0.55418 0.00032326 1.6046 0.00093594 583.8074396006011 70.947 1.9355 64.771 64.168 66.104 -6.1757 203 101 3 0 0 0 0.0086209 9 46521 46149;46269;46395;46521;46653;46787;46927;47076;47270 89.401 53.357 1 111440000 21593 3003 14651 14930 25518;25519;25520;25521;25522;25523;25524;25525;25526 25521 0.02106619856999714 HYKPTPLYF 9 Unmodified _HYKPTPLYF_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 389.206203 1164.59678 0.57015 0.00022191 -0.89843 -0.00034967 -0.32828 -0.00012777 389.20572570146567 47.995 0.19543 47.642 47.595 47.79 -0.3526 -0.016372 -0.00028748 NaN 24.991 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2650800 21594 3003 14651 14930 0.02106619856999714 HYKSQLLKI 9 Unmodified _HYKSQLLKI_ 0 0 0 REV__ENSG00000170191|ENST00000304788|NANP REV__ENSG00000170191|ENST00000304788|NANP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2289428710938 3 377.229119 1128.66553 -0.47123 -0.00017776 -0.33603 -0.00012676 -0.80725 -0.00030452 377.2291210803257 19.932 0.158 19.932 19.831 19.989 0 38 19 3 0 0 0 0.2546 1 9998 9998 19.362 2.7961 1 1419700 + 21595 22455 14652 14931 25527 25527 0.1063428415668568 HYKTFEKGHI 10 Unmodified _HYKTFEKGHI_ 0 0 0 nc|ENSG00000140465|P04798-3|CYP1A1;ENSG00000140465|ENST00000379727|CYP1A1 nc|ENSG00000140465|P04798-3|CYP1A1 nc|ENSG00000140465|P04798-3|CYP1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3328247070312 2 630.330205 1258.64586 NaN NaN NaN NaN NaN NaN NaN 70.435 1 69.957 69.457 70.457 -0.47808 0 0 0 0.96627 1 38523 38523 4.3292 0 1 21596 5239 14653 14932 25528 25528 0.026879081459583176 HYKYICAEH 9 Unmodified _HYKYICAEH_ 0 0 0 ENSG00000198670|ENST00000316300|LPA ENSG00000198670|ENST00000316300|LPA ENSG00000198670|ENST00000316300|LPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.77001953125 2 582.268758 1162.52296 0.9082 0.00052882 0.032038 1.8655E-05 0.94024 0.00054747 582.7700207407204 52.089 0.69474 52.03 51.751 52.446 -0.058914 86 33 4 0 0 0 0.30562 1 28275 28275 16.942 5.302 1 21847000 21597 10119 14654 14933 25529 25529 -0.05179671576979672 HYLDGDLI 8 Unmodified _HYLDGDLI_ 0 0 0 REV__ENSG00000144635|ENST00000273130|DYNC1LI1 REV__ENSG00000144635|ENST00000273130|DYNC1LI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2375183105469 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 57.166 1 56.676 56.176 57.176 -0.48974 0 0 0 0.85111 1 31064 31064 20.871 3.7583 1 + 21598 20720 14655 14934 25530 25530 -0.014104943735219422 HYLDINTVL 9 Unmodified _HYLDINTVL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.292236328125 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 67.12 1 66.638 66.138 67.138 -0.48255 0 0 0 0.18753 1 36663 36663 32.305 15.363 1 21599 8367 14656 14935 25531 25531 0.031137256147076187 HYLDNLCIF 9 Carbamidomethyl (C) _HYLDNLC(Carbamidomethyl (C))IF_ HYLDNLC(1)IF HYLDNLC(46)IF 0 1 0 ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7843627929688 2 597.784241 1193.55393 0.72022 0.00043054 -0.95698 -0.00057206 -0.23676 -0.00014153 597.7842442463361 96.351 0.2976 90.175 90.007 90.305 -6.1757 39 17 3 0 0 0 0.047196 1 63819 63819 46.021 28.908 1 36947000 21600 3204 14657 14936 25532 25532 330 -0.0351051826278308 HYLDQLNHI 9 Unmodified _HYLDQLNHI_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.74169921875 2 576.793455 1151.57236 1.0888 0.000628 -1.7362 -0.0010014 -0.64741 -0.00037342 576.7923077885827 50.062 0.37939 44.523 44.316 44.695 -5.5391 36 22 2 0 0 0 0.16585 1 31465 31465 29.082 19.698 1 22513000 21601 2073;1743 14658 14937 25533 25533 0.002633597034673585 HYLDTTTLI 9 Unmodified _HYLDTTTLI_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7862548828125 2 538.784764 1075.55498 0.19452 0.00010481 0.078921 4.2521E-05 0.27344 0.00014733 538.7847793348577 56.694 0.47601 56.694 56.424 56.9 0 36 20 2 0 0 0 0.0094915 2 31441 31441;31549 81.864 51.228 1 38587000 21602 1723;7583 14659 14938 25534;25535 25534 0.02022019377795914 HYLDTTTLI 9 Unmodified _HYLDTTTLI_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7841796875 2 538.784764 1075.55498 0.21499 0.00011583 -0.74461 -0.00040118 -0.52962 -0.00028535 538.7844824074573 57.102 0.38987 56.617 56.43 56.82 -0.48554 58 17 4 0 0 0 0.0086179 2 30977 30977;31079 89.427 58.79 1 34154000 21603 1723;7583 14659 14938 25536;25537 25536 0.02022019377795914 HYLDTTTLI 9 Unmodified _HYLDTTTLI_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000099942|ENST00000354336|CRKL;ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7835693359375 2 538.784764 1075.55498 1.3103 0.00070599 0.31876 0.00017174 1.6291 0.00087773 538.7862183204775 64.117 0.51494 57.941 57.595 58.11 -6.1757 57 27 3 0 0 0 0.0094915 2 41493 41362;41493 81.864 49.078 1 125070000 21604 1723;7583 14659 14938 25538;25539 25539 0.02022019377795914 HYLERRNYI 9 Unmodified _HYLERRNYI_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8922729492188 3 421.891278 1262.652 0.79961 0.00033735 1.5009 0.0006332 2.3005 0.00097055 422.2261973391115 28.153 0.27521 25.005 24.843 25.119 -3.1482 31 14 3 0 0 0 0.078314 1 15664 15664 29.437 11.995 1 7973300 21605 9737 14660 14939 25540 25540 0.0311842637747759 HYLERYLR 8 Unmodified _HYLERYLR_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7842407226562 2 575.311815 1148.60908 0.17627 0.00010141 -1.1734 -0.00067505 -0.99709 -0.00057364 575.3110562282894 54.692 0.29561 54.225 54.025 54.321 -0.46664 22 14 2 0 0 0 8.7369 1 29697 29697 10.183 4.9527 1 2338900 + 21606 23320 14661 14940 25541 25541 0.040716563200248856 HYLFNAFDT 9 Unmodified _HYLFNAFDT_ 0 0 0 nc|ENSG00000182132|Q9NZI2-3|KCNIP1;ENSG00000182132|ENST00000328939|KCNIP1;nc|ENSG00000182132|Q9NZI2-4|KCNIP1;nc|ENSG00000182132|Q9NZI2|KCNIP1;nc|ENSG00000182132|Q9NZI2-5|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 nc|ENSG00000182132|Q9NZI2-3|KCNIP1 MSMS AL20221201_MKP_PDAC_01 4 376.5648498535156 3 376.510063 1126.50836 NaN NaN NaN NaN NaN NaN NaN 23.002 1 20.223 19.723 20.723 -2.7784 0 0 0 0.7243 1 12416 12416 5.2969 0.39987 1 21607 9019 14662 14941 25542 25542 -0.04983420453481813 HYLFNTALF 9 Unmodified _HYLFNTALF_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2905883789062 2 563.290017 1124.56548 1.3445 0.00075732 -1.7246 -0.00097143 -0.38011 -0.00021411 563.2875316348775 98.476 0.20377 92.3 92.148 92.352 -6.1757 22 13 2 0 0 0 0.031062 1 65317 65317 54.774 5.2193 1 15650000 21608 885 14663 14942 25543 25543 0.00818046822882934 HYLHQHYI 8 Unmodified _HYLHQHYI_ 0 0 0 ENST00000564731.5_1_16:46761123-46772038:-|nuORF;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3 ENST00000564731.5_1_16:46761123-46772038:-|nuORF ENST00000564731.5_1_16:46761123-46772038:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8041381835938 2 555.777608 1109.54066 4.5385 0.0025224 2.7431 0.0015245 7.2815 0.0040469 556.2781202626197 99.069 0.074738 99.041 99.003 99.077 -0.028282 4 2 2 0 0 0 8.7369 1 55042 55042 11.114 1.767 1 398070 21609 5268 14664 14943 25544 25544 -0.009725882598331737 HYLHQHYI 8 Unmodified _HYLHQHYI_ 0 0 0 ENST00000564731.5_1_16:46761123-46772038:-|nuORF;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3 ENST00000564731.5_1_16:46761123-46772038:-|nuORF ENST00000564731.5_1_16:46761123-46772038:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.777608 1109.54066 0.54961 0.00030546 3.2705 0.0018177 3.8202 0.0021232 555.7792451555923 99.471 0.089706 99.314 99.238 99.328 -0.1575 0.13666 8.3178E-05 NaN 17.087 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 288590 21610 5268 14664 14943 -0.009725882598331737 HYLHTIMKL 9 Unmodified _HYLHTIMKL_ 0 0 0 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 ENSG00000110925|ENST00000228515|CSRNP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8837890625 3 385.882955 1154.62703 1.5847 0.00061151 1.3229 0.0005105 2.9076 0.001122 386.2182062087371 89.151 0.38469 82.975 82.763 83.147 -6.1757 45 21 3 0 0 0 0.021948 1 58802 58802 61.602 41.976 1 15601000 21611 2752 14665 14944 25545 25545 0.05590655250534837 HYLIFKKPIL 10 Unmodified _HYLIFKKPIL_ 0 0 0 ENST00000370487.4_1_20:61431489-61431786:+|nuORF ENST00000370487.4_1_20:61431489-61431786:+|nuORF ENST00000370487.4_1_20:61431489-61431786:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2065734863281 3 424.600665 1270.78016 -0.026369 -1.1196E-05 -1.8558 -0.00078799 -1.8822 -0.00079918 424.599842261839 30.043 0.23571 30.073 29.946 30.182 0.030106 14 9 2 0 0 0 0.23675 1 15709 15709 7.1017 1.699 1 894500 21612 12334 14666 14945 25546 25546 0.15560593638679165 HYLLLPYLL 9 Unmodified _HYLLLPYLL_ 0 0 0 ENST00000493944.5_1_7:6618325-6621932:+|nuORF;ENST00000474097.5_1_7:6620192-6623202:+|nuORF;ENSG00000136247|ENST00000335965|ZDHHC4 ENST00000493944.5_1_7:6618325-6621932:+|nuORF ENST00000493944.5_1_7:6618325-6621932:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8430786132812 2 572.841885 1143.66922 3.3711 0.0019311 -0.46752 -0.00026781 2.9036 0.0016633 572.8414844306847 99.577 0.16086 99.54 99.452 99.613 -0.036301 11 5 3 0 0 0 0.028712 1 55309 55309 56.048 31.374 1 6412300 21613 4805 14667 14946 25547 25547 0.10312953930565527 HYLLRLLTF 9 Unmodified _HYLLRLLTF_ 0 0 0 nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC nc|ENSG00000290691|A6NGW2|STRCP1 nc|ENSG00000290691|A6NGW2|STRCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.9041442871094 3 392.569365 1174.68626 1.534 0.0006022 0.11514 4.5201E-05 1.6491 0.0006474 392.56937006881975 88.218 0.49897 82.042 81.85 82.349 -6.1757 88 27 4 0 0 0 0.3554 1 58384 58384 9.3831 4.0862 1 104570000 21614 10704 14668 14947 25548 25548 0.10590874536364936 HYLLYSLIF 9 Unmodified _HYLLYSLIF_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8258056640625 2 584.823692 1167.63283 4.4376 0.0025952 -2.0452 -0.0011961 2.3924 0.0013991 584.822951911579 98.79 0.16731 98.761 98.666 98.833 -0.028282 8 5 2 0 0 0 0.023761 1 54889 54889 59.795 27.678 1 4450300 21615 2634 14669 14948 25549 25549 0.05572077033843925 HYLNDILII 9 Unmodified _HYLNDILII_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.319580078125 2 557.318774 1112.623 0.72177 0.00040225 0.9896 0.00055152 1.7114 0.00095378 557.3192219214017 83.464 0.28582 82.966 82.789 83.075 -0.49751 19 11 2 0 0 0 0.27545 1 45661 45661 25.399 10.561 1 462040 21616 638 14670 14949 25550 25550 0.07118889028470221 HYLNDILII 9 Unmodified _HYLNDILII_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 557.318774 1112.623 1.1893 0.00066282 -0.27365 -0.00015251 0.91564 0.0005103 557.8203386255509 82.767 0.1275 82.829 82.741 82.869 0.062004 -0.068848 -0.00093769 NaN 25.399 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 892290 21617 638 14670 14949 0.07118889028470221 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.1975708007812 3 423.196701 1266.56827 -0.25986 -0.00010997 1.0628 0.00044976 0.80291 0.00033979 423.19722313945056 33.557 0.34826 33.397 33.247 33.595 -0.15918 34 14 3 0 0 0 0.010611 2 17481 17481;17581 78.728 51.099 1 8154000 21618 5351 14671 14950 25551;25552 25551 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.1971740722656 3 423.196701 1266.56827 0.016498 6.9818E-06 0.35303 0.0001494 0.36953 0.00015638 423.1968205393802 33.298 0.4195 33.327 33.163 33.582 0.028934 66 18 6 0 0 0 0.013041 2 17472 17472;17569 71.922 44.293 1 114220000 21619 5351 14671 14950 25553;25554 25553 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.2918090820312 2 634.291414 1266.56827 0.0090703 5.7532E-06 0.46565 0.00029536 0.47472 0.00030111 634.29204150552 33.308 0.22906 33.337 33.208 33.437 0.028934 14 9 2 0 0 0 0.13231 1 17520 17520 39.957 27.717 1 1714100 21620 5351 14671 14950 25555 25555 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.1973571777344 3 423.196701 1266.56827 1.2892 0.0005456 -0.74904 -0.00031699 0.54019 0.00022861 423.19636565009165 38.041 0.37748 33.673 33.437 33.814 -4.3689 69 22 4 0 0 0 0.010611 2 22295 22295;22423 78.728 45.942 1 66507000 21621 5351 14671 14950 25556;25557 25556 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.1971740722656 3 423.196701 1266.56827 0.78711 0.0003331 0.4778 0.0002022 1.2649 0.00053531 423.1971323324361 77.455 1.2688 71.279 70.504 71.773 -6.1757 198 71 4 0 0 0 0.018301 5 50714 50362;50474;50595;50714;50834 65.235 37.684 1 85654000 21622 5351 14671 14950 25558;25559;25560;25561;25562 25561 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MSMS AL20221201_MKP_PDAC_01 4 634.2909545898438 2 634.291414 1266.56827 NaN NaN NaN NaN NaN NaN NaN 38.074 1 33.706 33.206 34.206 -4.3689 0 0 0 2.4175E-06 1 22416 22416 162.95 130.65 1 21623 5351 14671 14950 25563 25563 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MSMS AL20221201_MKP_PDAC_01 4 634.2897338867188 2 634.291414 1266.56827 NaN NaN NaN NaN NaN NaN NaN 77.419 1 71.244 70.744 71.744 -6.1757 0 0 0 5.2509E-07 1 50641 50641 187.93 130.46 1 21624 5351 14671 14950 25564 25564 -0.054346849995909 HYLNHWNHF 9 Unmodified _HYLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP ENSG00000141560|ENST00000269373|FN3KRP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 423.196701 1266.56827 0.07552 3.196E-05 -0.049436 -2.0921E-05 0.026083 1.1038E-05 423.1969420834881 33.694 0.27524 33.723 33.562 33.837 0.028934 0.12536 -0.00023646 NaN 78.728 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 777270 21625 5351 14671 14950 -0.054346849995909 HYLNIRYTL 9 Unmodified _HYLNIRYTL_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8272705078125 2 596.827298 1191.64004 -0.31411 -0.00018747 -0.045757 -2.7309E-05 -0.35987 -0.00021478 596.8276855998959 51.484 0.2316 51.43 51.306 51.538 -0.053871 21 11 3 0 0 0 0.42 1 27888 27888 16.149 7.4037 1 2544600 21626 10814 14672 14951 25565 25565 0.05188809634273639 HYLNVAFDL 9 Unmodified _HYLNVAFDL_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2794189453125 2 546.279649 1090.54475 0.09436 5.1547E-05 -0.76697 -0.00041898 -0.67261 -0.00036743 546.2790563284989 72.687 0.18028 72.729 72.661 72.842 0.041725 14 8 2 0 0 0 0.087258 1 40050 40050 36.044 22.536 1 2131300 21627 2082 14673 14952 25566 25566 0.003094564432331026 HYLNVAFDL 9 Unmodified _HYLNVAFDL_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2802124023438 2 546.279649 1090.54475 1.3131 0.00071731 -0.86404 -0.00047201 0.44903 0.0002453 546.27880031864 95.714 0.27884 89.538 89.351 89.63 -6.1757 42 17 3 0 0 0 0.0095811 1 63362 63362 81.613 45.486 1 76138000 21628 2082 14673 14952 25567 25567 0.003094564432331026 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2011108398438 3 382.201452 1143.58253 -0.14585 -5.5743E-05 -0.044094 -1.6853E-05 -0.18994 -7.2596E-05 382.20144258015927 42.021 0.29761 42.021 41.864 42.161 0 42 15 4 0 0 0 0.052168 1 22690 22690 32.786 20.545 1 36784000 21629 4239 14674 14953 25568 25568 0.01647967428721131 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.200439453125 3 382.201452 1143.58253 -0.054182 -2.0708E-05 -0.28923 -0.00011054 -0.34341 -0.00013125 382.2013548160028 42.244 0.24648 41.937 41.817 42.064 -0.30682 33 11 4 0 0 0 0.023164 1 22403 22403 45.7 29.551 1 125330000 21630 4239 14674 14953 25569 25569 0.01647967428721131 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.534912109375 3 382.201452 1143.58253 -0.10054 -3.8425E-05 0.094848 3.6251E-05 -0.0056877 -2.1738E-06 382.20165631822255 41.998 0.22662 41.989 41.834 42.06 -0.0088196 21 10 3 0 0 0 0.0081063 1 22448 22448 81.89 47.488 1 15273000 21631 4239 14674 14953 25570 25570 0.01647967428721131 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2020263671875 3 382.201452 1143.58253 1.7881 0.00068341 -0.19841 -7.5832E-05 1.5897 0.00060758 382.2013471772835 47.437 0.46807 42.203 42 42.468 -5.2339 89 27 4 0 0 0 0.0094915 3 29421 29298;29421;29557 81.89 59.154 1 124850000 21632 4239 14674 14953 25571;25572;25573 25572 0.01647967428721131 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.202392578125 3 382.201452 1143.58253 0.82203 0.00031418 0.44949 0.0001718 1.2715 0.00048598 382.2016478252832 77.222 1.4302 71.046 70.504 71.935 -6.1757 237 80 4 0 0 0 0.0088154 5 50229 50229;50338;50464;50585;50716 115.69 81.29 1 128970000 21633 4239 14674 14953 25574;25575;25576;25577;25578 25574 0.01647967428721131 HYLPDLHHL 9 Unmodified _HYLPDLHHL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.801025390625 2 572.79854 1143.58253 0.45303 0.0002595 1.7352 0.00099393 2.1882 0.0012534 572.7994674421574 77.188 0.71513 71.012 70.661 71.376 -6.1757 65 40 2 0 0 0 0.0077963 3 50513 50386;50513;50637 109.63 54.98 1 13663000 21634 4239 14674 14953 25579;25580;25581 25580 0.01647967428721131 HYLPIGIYDYF 11 Unmodified _HYLPIGIYDYF_ 0 0 0 ENSG00000086696|ENST00000199936|HSD17B2;ENST00000566838.2_3_16:82131651-82132038:+|nuORF ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.3535766601562 2 700.847896 1399.68124 0.88902 0.00062307 4.1563 0.0029129 5.0453 0.003536 701.3523132471428 100.04 0.12025 93.862 93.804 93.924 -6.1757 16 7 3 0 0 0 0.010484 1 66816 66816 67.344 36.076 1 19881000 21635 1442 14675 14954 25582 25582 -0.0026147411690544686 HYLPSYYHL 9 Unmodified _HYLPSYYHL_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS;ENST00000529149.1_1_11:126207958-126215505:+|nuORF ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7965087890625 2 596.792924 1191.57129 1.1699 0.00069821 2.566 0.0015314 3.736 0.0022296 596.7951694656755 46.814 0.15829 46.781 46.675 46.834 -0.033417 14 7 3 0 0 0 0.014417 1 25200 25200 77.984 7.2688 1 2581400 21636 2698 14676 14955 25583 25583 -0.016828546654323873 HYLPSYYHL 9 Unmodified _HYLPSYYHL_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS;ENST00000529149.1_1_11:126207958-126215505:+|nuORF ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MSMS AL20221201_MKP_PDAC_01 4 596.7965698242188 2 596.792924 1191.57129 NaN NaN NaN NaN NaN NaN NaN 52.466 1 46.732 46.232 47.232 -5.7345 0 0 0 0.098496 1 33120 33120 57.471 6.6163 1 21637 2698 14676 14955 25584 25584 -0.016828546654323873 HYLQEAKKL 9 Unmodified _HYLQEAKKL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.217041015625 3 377.216991 1128.62914 -0.47191 -0.00017801 -3.0961 -0.0011679 -3.568 -0.0013459 377.21573577276314 19.903 0.12019 19.903 19.831 19.952 0 27 14 2 0 0 0 0.16226 1 9975 9975 19.362 11.206 1 1155900 21638 1080 14677 14956 25585 25585 0.0699740725999618 HYLQEAKKL 9 Unmodified _HYLQEAKKL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2149353027344 3 377.216991 1128.62914 0.64225 0.00024227 -1.4229 -0.00053674 -0.78065 -0.00029447 377.2165293908481 22.961 0.31498 20.182 20.058 20.373 -2.7784 32 19 2 0 0 0 0.047788 1 12379 12379 42.312 23.939 1 13968000 21639 1080 14677 14956 25586 25586 0.0699740725999618 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.8045043945312 2 581.803823 1161.59309 0.14319 8.331E-05 1.4045 0.00081716 1.5477 0.00090047 582.3060647450897 37.665 0.2367 37.665 37.549 37.786 0 36 11 4 0 0 0 0.01958 2 20116 20085;20116 63.961 35.474 1 5250900 21640 35 14678 14957 25587;25588 25588 0.01875950083126554 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8056030273438 2 581.803823 1161.59309 -0.0049001 -2.8509E-06 -0.89627 -0.00052145 -0.90117 -0.0005243 581.8031853474771 38.105 0.37425 37.833 37.618 37.992 -0.27133 46 17 4 0 0 0 0.069655 2 20110 20002;20110 40.239 11.752 1 8093700 21641 35 14678 14957 25589;25590 25590 0.01875950083126554 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2044067382812 3 388.204974 1161.59309 0.041666 1.6175E-05 -3.7379 -0.0014511 -3.6962 -0.0014349 388.2034161489811 38.121 0.48336 37.85 37.58 38.064 -0.27133 67 22 4 0 0 0 0.19127 1 20063 20063 22.658 11.859 1 19432000 21642 35 14678 14957 25591 25591 0.01875950083126554 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.20556640625 3 388.204974 1161.59309 1.0521 0.00040845 -0.10765 -4.1791E-05 0.94449 0.00036665 388.20477173776175 43.388 0.452 38.623 38.405 38.857 -4.7648 65 30 3 0 0 0 0.10734 2 26400 26264;26400 29.841 20.297 1 50584000 21643 35 14678 14957 25592;25593 25593 0.01875950083126554 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8051147460938 2 581.803823 1161.59309 0.67546 0.00039298 0.28358 0.00016499 0.95903 0.00055797 581.8041822141881 43.386 0.40926 38.621 38.433 38.843 -4.7648 64 27 3 0 0 0 0.0047067 2 26437 26292;26437 118.07 80.094 1 49151000 21644 35 14678 14957 25594;25595 25595 0.01875950083126554 HYLREVQAF 9 Unmodified _HYLREVQAF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.204974 1161.59309 -0.14445 -5.6076E-05 -7.2854 -0.0028282 -7.4298 -0.0028843 388.2019998751243 37.633 0.28368 37.65 37.532 37.816 0.017036 -0.071225 -0.0031129 NaN 22.658 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1653700 21645 35 14678 14957 0.01875950083126554 HYLRNLLFFDL 11 Unmodified _HYLRNLLFFDL_ 0 0 0 ENSG00000128242|ENST00000406361|GAL3ST1 ENSG00000128242|ENST00000406361|GAL3ST1 ENSG00000128242|ENST00000406361|GAL3ST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.3980712890625 2 725.895712 1449.77687 0.24813 0.00018012 0.94208 0.00068385 1.1902 0.00086397 726.3970418668436 93.306 0.14091 92.848 92.79 92.931 -0.45741 7 5 2 0 0 0 0.74096 1 51005 51005 1.1933 0.88631 1 129180 21646 4049 14679 14958 25596 25596 0.0699729879397637 HYLSYLNNL 9 Unmodified _HYLSYLNNL_ 0 0 0 nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF nc|ENSG00000089053|Q9UJX4-3|ANAPC5 nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7891235351562 2 568.790381 1135.56621 0.012587 7.1593E-06 0.81956 0.00046616 0.83215 0.00047332 568.7905766165654 61.429 0.2738 60.939 60.777 61.051 -0.48932 20 12 2 0 0 0 0.11784 1 33405 33405 42.095 30.454 1 2578700 21647 1511 14680 14959 25597 25597 0.003848414719413995 HYLSYLNNL 9 Unmodified _HYLSYLNNL_ 0 0 0 nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF nc|ENSG00000089053|Q9UJX4-3|ANAPC5 nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.790381 1135.56621 0.41492 0.000236 1.8656 0.0010612 2.2805 0.0012972 568.7916746165834 61.001 0.27944 60.957 60.805 61.084 -0.04351 0.0090016 0.00076329 NaN 42.095 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3185100 21648 1511 14680 14959 0.003848414719413995 HYLVSLQNW 9 Unmodified _HYLVSLQNW_ 0 0 0 nc|ENSG00000262919|Q8N1B3-2|CCNQ;ENSG00000262919|ENST00000576892|CCNQ nc|ENSG00000262919|Q8N1B3-2|CCNQ nc|ENSG00000262919|Q8N1B3-2|CCNQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2990112304688 2 580.298373 1158.58219 1.2126 0.00070369 1.0976 0.00063693 2.3102 0.0013406 580.2989040660933 86.509 0.2793 80.333 80.118 80.397 -6.1757 19 14 2 0 0 0 0.062454 1 56991 56991 54.774 24.137 1 7868200 21649 10850 14681 14960 25598 25598 0.009245477088370535 HYLYQIAHL 9 Unmodified _HYLYQIAHL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3089599609375 2 579.308741 1156.60293 0.37823 0.00021911 -0.0085425 -4.9488E-06 0.36968 0.00021416 579.3085527535263 52.912 0.42278 52.461 52.28 52.703 -0.45173 72 21 5 0 0 0 0.017075 1 28566 28566 74.423 45.341 1 48610000 21650 9729 14682 14961 25599 25599 0.030891380884895625 HYLYQIAHL 9 Unmodified _HYLYQIAHL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3096923828125 2 579.308741 1156.60293 1.1353 0.00065769 -0.5535 -0.00032065 0.5818 0.00033704 579.3083175903619 52.595 0.41789 52.536 52.348 52.766 -0.058918 69 20 5 0 0 0 0.011671 2 28443 28443;28547 85.357 52.571 1 67857000 21651 9729 14682 14961 25600;25601 25600 0.030891380884895625 HYLYQIAHL 9 Unmodified _HYLYQIAHL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3093872070312 2 579.308741 1156.60293 0.94279 0.00054616 0.087366 5.0612E-05 1.0302 0.00059678 579.3086651986632 83.903 1.2731 77.728 77.045 78.318 -6.1757 194 68 4 0 0 0 0.0090524 6 55034 54912;55034;55160;55276;55400;55546 104.8 56.275 1 137760000 21652 9729 14682 14961 25602;25603;25604;25605;25606;25607 25603 0.030891380884895625 HYMPPPYASL 10 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ HYM(1)PPPYASL HYM(60)PPPYASL 0 0 1 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.279052734375 2 596.278792 1190.54303 0.29573 0.00017634 -0.071806 -4.2816E-05 0.22393 0.00013352 596.2788730858109 46.619 0.38672 46.619 46.412 46.799 0 36 17 3 0 0 0 0.045724 1 25544 25544 60.39 37.653 1 5070700 21653 6520 14683 14962 25608 25608 1139 -0.04461920637049843 HYMPPPYASL 10 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ HYM(1)PPPYASL HYM(71)PPPYASL 0 0 1 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2784423828125 2 596.278792 1190.54303 0.71188 0.00042448 -0.65036 -0.00038779 0.061526 3.6687E-05 596.2785776382638 46.926 0.44657 46.589 46.347 46.794 -0.33664 61 22 4 0 0 0 0.02544 2 25060 25060;25165 70.716 57.673 1 20806000 21654 6520 14683 14962 25609;25610 25609 1139 -0.04461920637049843 HYMPPPYASL 10 Oxidation (M) _HYM(Oxidation (M))PPPYASL_ HYM(1)PPPYASL HYM(93)PPPYASL 0 0 1 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2797241210938 2 596.278792 1190.54303 0.10097 6.0205E-05 1.733 0.0010334 1.834 0.0010936 596.2796621474465 52.124 0.40031 46.39 46.18 46.58 -5.7345 35 26 2 0 0 0 0.0071864 1 32904 32904 92.822 57.89 1 68381000 21655 6520 14683 14962 25611 25611 1139 -0.04461920637049843 HYMPPPYASL 10 Unmodified _HYMPPPYASL_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2811889648438 2 588.281334 1174.54812 0.30049 0.00017677 -0.74919 -0.00044073 -0.4487 -0.00026396 588.2805338435843 52.986 0.64363 52.534 52.299 52.943 -0.45173 41 32 2 0 0 0 0.37389 1 28643 28643 23.148 16.425 1 1201700 21656 6520 14683 14963 25612 25612 -0.03217616774418275 HYMPPPYASL 10 Unmodified _HYMPPPYASL_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2825317382812 2 588.281334 1174.54812 1.3374 0.00078676 -0.81666 -0.00048043 0.52073 0.00030634 588.2808215205741 58.83 0.79702 52.755 52.353 53.15 -6.0745 115 44 3 0 0 0 4.8787E-11 3 37734 37597;37734;37875 161.89 123.72 1 54286000 21657 6520 14683 14963 25613;25614;25615 25614 -0.03217616774418275 HYMSINDSF 9 Oxidation (M) _HYM(Oxidation (M))SINDSF_ HYM(1)SINDSF HYM(55)SINDSF 0 0 1 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.23486328125 2 565.234581 1128.45461 0.70917 0.00040085 -0.75135 -0.00042469 -0.042187 -2.3845E-05 565.23423210161 36.358 0.38038 36.358 36.186 36.566 0 59 18 4 0 0 0 0.031062 1 19283 19283 54.774 35.517 1 17910000 21658 9434 14684 14964 25616 25616 1555 -0.10447960947499269 HYMSINDSF 9 Oxidation (M) _HYM(Oxidation (M))SINDSF_ HYM(1)SINDSF HYM(68)SINDSF 0 0 1 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2354125976562 2 565.234581 1128.45461 0.4301 0.00024311 -0.15484 -8.752E-05 0.27526 0.00015559 565.2343851438246 41.344 0.45311 36.736 36.499 36.952 -4.6079 47 29 2 0 0 0 0.015445 2 24699 24699;24873 68.081 45.344 1 19646000 21659 9434 14684 14964 25617;25618 25617 1555 -0.10447960947499269 HYMSINDSF 9 Oxidation (M) _HYM(Oxidation (M))SINDSF_ 0 0 1 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.234581 1128.45461 -0.24734 -0.00013981 1.4607 0.00082563 1.2133 0.00068582 565.2360608538071 36.661 0.2375 36.411 36.253 36.49 -0.2497 -0.090764 0.0020778 NaN 68.081 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1610700 21660 9434 14684 14964 1555 -0.10447960947499269 HYMSINDSF 9 Unmodified _HYMSINDSF_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2371215820312 2 557.237124 1112.45969 1.3253 0.00073852 -0.2726 -0.0001519 1.0527 0.00058662 557.2369481120152 53.679 0.38793 47.874 47.693 48.081 -5.8042 51 24 3 0 0 0 0.00856 2 34038 33901;34038 100.37 54.351 1 40841000 21661 9434 14684 14965 25619;25620 25620 -0.09203657084890438 HYMTVDDLL 9 Oxidation (M) _HYM(Oxidation (M))TVDDLL_ HYM(1)TVDDLL HYM(54)TVDDLL 0 0 1 nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7635498046875 2 561.760432 1121.50631 0.63905 0.00035899 -2.2872 -0.0012848 -1.6481 -0.00092584 561.7595213601786 53.365 0.89103 53.365 53.141 54.032 0 75 40 2 0 0 0 0.03327 1 29525 29525 53.576 40.068 1 6786800 21662 2745 14685 14966 25621 25621 477 -0.04958217253602015 HYNFQPYR 8 Unmodified _HYNFQPYR_ 0 0 0 ENST00000580886.5_1_17:7476159-7477698:+|nuORF ENST00000580886.5_1_17:7476159-7477698:+|nuORF ENST00000580886.5_1_17:7476159-7477698:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.768310546875 2 562.76724 1123.51993 NaN NaN NaN NaN NaN NaN NaN 88.696 1 88.192 87.692 88.692 -0.50423 0 0 0 0.97444 1 48506 48506 0.69038 0.088878 1 21663 15560 14686 14967 25622 25622 -0.03689178639478996 HYNLCFLDSFE 11 Unmodified _HYNLCFLDSFE_ 0 0 0 ENSG00000189299|ENST00000339140|FOXR2 ENSG00000189299|ENST00000339140|FOXR2 ENSG00000189299|ENST00000339140|FOXR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.203857421875 3 463.204422 1386.59144 0.38022 0.00017612 -1.4927 -0.00069144 -1.1125 -0.00051532 463.20370528676557 71.64 0.29379 71.164 70.999 71.293 -0.47609 30 11 3 0 0 0 0.71341 1 39199 39199 2.6312 0.88896 1 1454800 21664 9739 14687 14968 25623 25623 -0.08639471787819275 HYNMFNHHF 9 Oxidation (M) _HYNM(Oxidation (M))FNHHF_ HYNM(1)FNHHF HYNM(44)FNHHF 0 0 1 ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4 ENST00000505451.5_1_4:25314431-25353701:+|nuORF ENST00000505451.5_1_4:25314431-25353701:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5105285644531 3 421.51018 1261.50871 0.42861 0.00018066 0.51006 0.000215 0.93867 0.00039566 421.51025569840226 24.862 0.22309 21.979 21.871 22.094 -2.8831 22 14 2 0 0 0 0.05483 1 13552 13552 43.772 40.453 1 6645100 21665 7731 14688 14969 25624 25624 1318 -0.11158324005282338 HYNMFNHHF 9 Unmodified _HYNMFNHHF_ 0 0 0 ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4 ENST00000505451.5_1_4:25314431-25353701:+|nuORF ENST00000505451.5_1_4:25314431-25353701:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 623.7616577148438 2 623.764175 1245.5138 NaN NaN NaN NaN NaN NaN NaN 46.404 1 41.323 40.823 41.823 -5.0805 0 0 0 0.7243 1 28653 28653 8.5933 0.68312 1 21666 7731 14688 14970 25625 25625 -0.09914020142673508 HYNQHNSGSYL 11 Unmodified _HYNQHNSGSYL_ 0 0 0 ENSG00000115112|ENST00000263707|TFCP2L1 ENSG00000115112|ENST00000263707|TFCP2L1 ENSG00000115112|ENST00000263707|TFCP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.2932739257812 2 660.291808 1318.56906 -0.071922 -4.7489E-05 1.6598 0.0010959 1.5879 0.0010485 660.2927845903305 37.467 0.23538 37.467 37.333 37.569 0 21 12 2 0 0 0 0.44182 1 19950 19950 19.362 1.2156 1 3468200 21667 3086 14689 14971 25626 25626 -0.07747935141196649 HYNRSEEEF 9 Unmodified _HYNRSEEEF_ 0 0 0 nc|ENSG00000156384|Q86XK3-2|SFR1;nc|ENSG00000156384|Q86XK3-3|SFR1;ENSG00000156384|ENST00000369727|SFR1 nc|ENSG00000156384|Q86XK3-2|SFR1 nc|ENSG00000156384|Q86XK3-2|SFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7593994140625 2 605.759809 1209.50507 -0.012472 -7.5551E-06 -0.23009 -0.00013938 -0.24256 -0.00014693 605.7598755485758 68.786 0.58323 68.786 68.463 69.046 0 79 25 4 0 0 0 0.55144 1 38428 38428 4.3292 0.73274 1 4405900 21668 16292 14690 14972 25627 25627 -0.09130715298169889 HYNSDLNNLLF 11 Unmodified _HYNSDLNNLLF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8318481445312 2 675.327859 1348.64116 -0.43344 -0.00029271 0.68298 0.00046124 0.24954 0.00016852 675.3282495668162 71.247 0.34222 71.247 71.041 71.384 0 41 16 3 0 0 0 0.20054 1 39635 39635 32.037 17.199 1 3256300 21669 7171 14691 14973 25628 25628 -0.019210207874948537 HYNSDLNNLLF 11 Unmodified _HYNSDLNNLLF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.3285522460938 2 675.327859 1348.64116 0.50728 0.00034258 0.88013 0.00059437 1.3874 0.00093695 675.3284521753108 71.657 0.54237 71.181 70.927 71.469 -0.47609 75 21 5 0 0 0 0.00098399 3 39230 39132;39230;39349 83.429 62.975 1 30872000 21670 7171 14691 14973 25629;25630;25631 25630 -0.019210207874948537 HYNSDLNNLLF 11 Unmodified _HYNSDLNNLLF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.3294067382812 2 675.327859 1348.64116 1.439 0.00097182 1.7767 0.0011999 3.2157 0.0021717 675.328942382131 71.057 0.40369 71.093 70.915 71.319 0.035515 52 17 4 0 0 0 5.0416E-09 2 39102 39102;39207 114.2 87.318 1 8840400 21671 7171 14691 14973 25632;25633 25632 -0.019210207874948537 HYNSDLNNLLF 11 Unmodified _HYNSDLNNLLF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.3287963867188 2 675.327859 1348.64116 0.99715 0.0006734 0.2462 0.00016627 1.2434 0.00083967 675.3279986960581 88.816 0.94685 82.64 82.149 83.096 -6.1757 180 52 4 0 0 0 1.2E-11 5 58872 58368;58494;58614;58738;58872 128.93 98.296 1 149270000 21672 7171 14691 14973 25634;25635;25636;25637;25638 25638 -0.019210207874948537 HYNSHYEKF 9 Unmodified _HYNSHYEKF_ 0 0 0 nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2;nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8527221679688 3 408.8526 1223.53597 0.99141 0.00040534 -0.35327 -0.00014444 0.63814 0.00026091 408.85256491030117 18.987 0.23439 16.366 16.205 16.439 -2.6215 25 14 2 0 0 0 0.19127 1 10005 10005 22.658 17.361 1 2442900 21673 5906 14692 14974 25639 25639 -0.06685517193250234 HYNVSKEGTL 10 Unmodified _HYNVSKEGTL_ 0 0 0 nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.1965026855469 3 383.196256 1146.56694 1.2206 0.00046771 0.39287 0.00015055 1.6134 0.00061826 383.19617472629477 46.895 0.48579 46.861 46.452 46.938 -0.033421 27 23 2 0 0 0 0.66569 1 25133 25133 3.5871 0.59182 1 1606800 21674 5925 14693 14975 25640 25640 -0.0004836387897739769 HYNWLIYHL 9 Unmodified _HYNWLIYHL_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8228149414062 2 629.822015 1257.62948 0.99518 0.00062679 -0.056249 -3.5427E-05 0.93893 0.00059136 629.822093826178 96.99 0.37177 90.815 90.638 91.01 -6.1757 66 21 4 0 0 0 0.0071894 2 64194 64194;64317 123.1 95.467 1 127870000 21675 8474 14694 14976 25641;25642 25641 0.0109682697984681 HYNWLIYHL 9 Unmodified _HYNWLIYHL_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2181396484375 3 420.217102 1257.62948 1.483 0.0006232 0.23171 9.7371E-05 1.7148 0.00072057 420.21735335436813 96.98 0.25452 90.804 90.674 90.929 -6.1757 18 14 2 0 0 0 0.06294 1 64241 64241 41.84 32.457 1 13976000 21676 8474 14694 14976 25643 25643 0.0109682697984681 HYNWTASSP 9 Unmodified _HYNWTASSP_ 0 0 0 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12;ENSG00000254521|ENST00000291707|SIGLEC12 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.1620483398438 3 354.826163 1061.45666 1.8704 0.00066367 1.7399 0.00061736 3.6103 0.001281 355.161246949543 53.655 0.46806 47.851 47.659 48.127 -5.8042 45 29 2 0 0 0 0.46501 1 33844 33844 6.1918 0.46 1 20039000 21677 10776 14695 14977 25644 25644 -0.07161164147396448 HYPDFHQEL 9 Unmodified _HYPDFHQEL_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-5|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2691040039062 2 593.269813 1184.52507 0.21266 0.00012616 0.14147 8.3929E-05 0.35413 0.00021009 593.7716380475395 39.234 0.18572 39.234 39.135 39.321 0 20 8 3 0 0 0 0.020676 1 21008 21008 67.838 48.581 1 2260800 21678 5667 14696 14978 25645 25645 -0.05980919567491583 HYPDRYGPLMQ 11 Unmodified _HYPDRYGPLMQ_ 0 0 0 REV__ENSG00000130309|ENST00000252599|COLGALT1 REV__ENSG00000130309|ENST00000252599|COLGALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.5526123046875 3 459.552045 1375.63431 0.72085 0.00033127 -0.59538 -0.00027361 0.12546 5.7657E-05 459.5521085536266 68.455 0.34448 68.48 68.318 68.662 0.025154 53 16 4 0 0 0 0.68649 1 37581 37581 5.5233 2.2037 1 8427700 + 21679 19714 14697 14979 25646 25646 -0.038486569397036874 HYPELKLPYF 10 Unmodified _HYPELKLPYF_ 0 0 0 ENST00000290541.6_1_1:151374297-151374348:+|nuORF ENST00000290541.6_1_1:151374297-151374348:+|nuORF ENST00000290541.6_1_1:151374297-151374348:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2330017089844 3 436.23253 1305.67576 1.0827 0.00047231 -0.49522 -0.00021603 0.58747 0.00025627 436.2322371780911 94.921 0.1262 88.745 88.66 88.787 -6.1757 11 6 2 0 0 0 0.18021 1 62852 62852 37.075 26.176 1 5244800 21680 11464 14698 14980 25647 25647 0.035148470912872654 HYPELKLPYF 10 Unmodified _HYPELKLPYF_ 0 0 0 ENST00000290541.6_1_1:151374297-151374348:+|nuORF ENST00000290541.6_1_1:151374297-151374348:+|nuORF ENST00000290541.6_1_1:151374297-151374348:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.8441162109375 2 653.845156 1305.67576 0.86723 0.00056704 -2.9446 -0.0019253 -2.0774 -0.0013583 654.3450273036781 94.903 0.16113 88.728 88.642 88.803 -6.1757 13 8 2 0 0 0 0.022967 1 62874 62874 72.968 48.947 1 6034500 21681 11464 14698 14980 25648 25648 0.035148470912872654 HYPKLWFVF 9 Unmodified _HYPKLWFVF_ 0 0 0 REV__ENST00000215912.9_3_22:31678754-31679060:-|nuORF REV__ENST00000215912.9_3_22:31678754-31679060:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.8925170898438 3 412.890327 1235.64915 NaN NaN NaN NaN NaN NaN NaN 53.465 1 47.661 47.161 48.161 -5.8042 0 0 0 0.20498 1 33801 33801 21.537 0 1 + 21682 24732 14699 14981 25649 25649 0.040752029905888776 HYPLTTLRF 9 Unmodified _HYPLTTLRF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.3168334960938 2 574.316566 1146.61858 NaN NaN NaN NaN NaN NaN NaN 54.973 1 54.495 53.995 54.995 -0.47798 0 0 0 0.46232 1 29808 29808 17.113 5.4726 1 21683 4346 14700 14982 25650 25650 0.05113424605565342 HYPLTTLRF 9 Unmodified _HYPLTTLRF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.31640625 2 574.316566 1146.61858 0.24249 0.00013927 1.9735 0.0011334 2.216 0.0012727 574.3164884002631 54.492 0.94158 54.425 53.901 54.843 -0.06694 156 46 5 0 0 0 0.10247 3 29623 29413;29623;29725 32.786 13.529 1 114530000 21684 4346 14700 14982 25651;25652;25653 25652 0.05113424605565342 HYPLTTLRF 9 Unmodified _HYPLTTLRF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.817138671875 2 574.316566 1146.61858 0.95322 0.00054745 0.16648 9.5614E-05 1.1197 0.00064306 574.3169693410575 59.537 0.53462 53.422 53.131 53.665 -6.1147 65 29 3 0 0 0 0.023481 3 38120 38120;38255;38393 60.074 38.327 1 65217000 21685 4346 14700 14982 25654;25655;25656 25654 0.05113424605565342 HYPLTTLRF 9 Unmodified _HYPLTTLRF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.316162109375 2 574.316566 1146.61858 0.68183 0.00039159 0.2781 0.00015972 0.95993 0.0005513 574.3167719677165 82.531 1.6079 76.355 75.584 77.192 -6.1757 280 89 4 0 0 0 0.078314 8 53860 53737;53860;53995;54114;54238;54368;54494;54629 38.176 16.939 1 90224000 21686 4346 14700 14982 25657;25658;25659;25660;25661;25662;25663;25664 25658 0.05113424605565342 HYPPKLHCI 9 Carbamidomethyl (C) _HYPPKLHC(Carbamidomethyl (C))I_ HYPPKLHC(1)I HYPPKLHC(48)I 0 1 0 ENSG00000100441|ENST00000553935|KHNYN ENSG00000100441|ENST00000553935|KHNYN ENSG00000100441|ENST00000553935|KHNYN MSMS AL20221201_MKP_PDAC_01 4 388.8707580566406 3 388.870938 1163.59098 NaN NaN NaN NaN NaN NaN NaN 27.043 1 24.006 23.506 24.506 -3.0365 0 0 0 0.083082 1 14955 14955 47.749 32.792 1 21687 1829 14701 14983 25665 25665 176 0.01573198073651838 HYPPVQVLF 9 Unmodified _HYPPVQVLF_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2999267578125 2 550.300384 1098.58622 0.085607 4.711E-05 -0.80006 -0.00044027 -0.71446 -0.00039317 550.2996749231423 70.092 0.7037 69.613 69.267 69.971 -0.47903 112 35 4 0 0 0 0.08691 3 38308 38206;38308;38419 40.449 32.538 1 22538000 21688 3189 14702 14984 25666;25667;25668 25667 0.040866372025675446 HYPPVQVLF 9 Unmodified _HYPPVQVLF_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3006591796875 2 550.300384 1098.58622 0.3582 0.00019712 -0.068471 -3.768E-05 0.28973 0.00015944 550.2996024241229 69.603 0.66411 69.634 69.333 69.997 0.030914 111 36 4 0 0 0 0.094149 3 38152 38152;38261;38367 46.921 46.921 1 34052000 21689 3189 14702 14984 25669;25670;25671 25669 0.040866372025675446 HYPPVQVLF 9 Unmodified _HYPPVQVLF_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3020629882812 2 550.300384 1098.58622 0.33248 0.00018297 -1.8645 -0.001026 -1.532 -0.00084306 550.300715313017 84.631 1.8226 78.456 77.403 79.225 -6.1757 178 105 2 0 0 0 0.14 6 55893 55365;55496;55623;55759;55893;56028 32.117 23.524 1 87646000 21690 3189 14702 14984 25672;25673;25674;25675;25676;25677 25676 0.040866372025675446 HYPTALLF 8 Unmodified _HYPTALLF_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.3136901855469 2 481.260728 960.506903 0.60987 0.00029351 0.993 0.00047789 1.6029 0.0007714 481.2608592799969 69.049 0.27707 69.079 68.95 69.227 0.030914 24 13 2 0 0 0 8.7369 1 37914 37914 28.173 12.405 1 1760900 21691 478 14703 14985 25678 25678 0.02506990248434704 HYQALPHF 8 Unmodified _HYQALPHF_ 0 0 0 REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7537536621094 2 506.753601 1011.49265 -0.079299 -4.0185E-05 0.29223 0.00014809 0.21293 0.0001079 506.75359417711417 53.834 0.39959 53.768 53.622 54.021 -0.066936 74 23 5 0 0 0 0.78849 1 29272 29272 9.3474 9.3474 1 49826000 + 21692 25204 14704 14986 25679 25679 -0.012636621798719716 HYQALPHF 8 Unmodified _HYQALPHF_ 0 0 0 REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF REV__ENST00000282561.3_1_6:121769761-121769857:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7543334960938 2 506.753601 1011.49265 0.94658 0.00047968 0.27446 0.00013909 1.221 0.00061877 506.75353224187336 88.773 0.69512 82.598 82.206 82.901 -6.1757 110 38 4 0 0 0 0.72953 1 58439 58439 14.582 1.0738 1 79067000 + 21693 25204 14704 14986 25680 25680 -0.012636621798719716 HYQDVSCLQF 10 Carbamidomethyl (C) _HYQDVSC(Carbamidomethyl (C))LQF_ HYQDVSC(1)LQF HYQDVSC(48)LQF 0 1 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.7880249023438 2 648.787512 1295.56047 0.57486 0.00037296 0.35809 0.00023232 0.93294 0.00060528 648.7873432795099 51.267 0.2832 51.267 51.109 51.393 0 30 12 3 0 0 0 0.095786 1 28280 28280 47.594 30.481 1 4598800 21694 896 14705 14987 25681 25681 79 -0.075486251020493 HYQDVSCLQF 10 Carbamidomethyl (C) _HYQDVSC(Carbamidomethyl (C))LQF_ HYQDVSC(1)LQF HYQDVSC(77)LQF 0 1 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.7866821289062 2 648.787512 1295.56047 NaN NaN NaN NaN NaN NaN NaN 51.745 1 51.311 50.811 51.811 -0.43367 0 0 0 0.017671 1 27918 27918 76.825 40.319 1 21695 896 14705 14987 25682 25682 79 -0.075486251020493 HYQDVSCLQF 10 Carbamidomethyl (C) _HYQDVSC(Carbamidomethyl (C))LQF_ HYQDVSC(1)LQF HYQDVSC(96)LQF 0 1 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.788330078125 2 648.787512 1295.56047 0.90023 0.00058406 -0.53973 -0.00035017 0.3605 0.00023389 648.7873070247106 57.665 0.479 51.638 51.356 51.835 -6.0275 86 26 4 0 0 0 0.0057332 2 36771 36771;36886 96.367 63.596 1 208440000 21696 896 14705 14987 25683;25684 25683 79 -0.075486251020493 HYQDVTVYL 9 Unmodified _HYQDVTVYL_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7576293945312 2 569.282389 1136.55022 0.3757 0.00021388 1.2324 0.00070156 1.6081 0.00091544 569.2830291557501 55.016 0.30173 54.538 54.349 54.65 -0.47798 25 14 2 0 0 0 0.16418 1 29793 29793 25.399 4.9457 1 3459700 21697 1992 14706 14988 25685 25685 -0.012588647649408813 HYQILNQAF 9 Unmodified _HYQILNQAF_ 0 0 0 nc|ENSG00000167220|Q9H0R4-2|HDHD2;ENST00000588183.5_1_18:44635055-44662674:-|nuORF;ENSG00000167220|ENST00000300605|HDHD2 nc|ENSG00000167220|Q9H0R4-2|HDHD2 nc|ENSG00000167220|Q9H0R4-2|HDHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.291748046875 2 567.290548 1132.56654 0.53605 0.00030409 0.76826 0.00043583 1.3043 0.00073992 567.2910861912823 55.667 0.23292 55.189 55.026 55.259 -0.47798 15 10 2 0 0 0 0.18144 1 30186 30186 26.884 14.352 1 709910 21698 7590 14707 14989 25686 25686 0.005562611917866889 HYQLQNVLEF 10 Unmodified _HYQLQNVLEF_ 0 0 0 REV__ENSG00000163659|ENST00000295924|TIPARP REV__ENSG00000163659|ENST00000295924|TIPARP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8885192871094 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 61.026 1 60.982 60.482 61.482 -0.04351 0 0 0 0.98914 1 33293 33293 0.77653 0 1 + 21699 21798 14708 14990 25687 25687 0.007201845634881465 HYQMKIHVF 9 Unmodified _HYQMKIHVF_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MSMS AL20221201_MKP_PDAC_01 4 401.5432434082031 3 401.542821 1201.60663 NaN NaN NaN NaN NaN NaN NaN 84.95 1 78.774 78.274 79.274 -6.1757 0 0 0 0.068038 1 55922 55922 51.63 42.086 1 21700 1985 14709 14991 25688 25688 0.013894845907088893 HYQMLKFF 8 Unmodified _HYQMLKFF_ 0 0 0 ENST00000528337.1_1_10:28813532-28820696:-|nuORF;ENST00000527986.5_1_10:28813535-28821502:-|nuORF ENST00000528337.1_1_10:28813532-28820696:-|nuORF ENST00000528337.1_1_10:28813532-28820696:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7486572265625 2 557.281137 1112.54772 0.78048 0.00043495 3.2511 0.0018118 4.0316 0.0022467 557.2831380739677 62.085 0.31667 61.597 61.387 61.704 -0.48764 26 14 3 0 0 0 8.7369 1 33878 33878 6.3541 0.59368 1 2534600 21701 14847 14710 14992 25689 25689 -0.004049917036127226 HYQQHPLHL 9 Unmodified _HYQQHPLHL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5363159179688 3 391.536835 1171.58868 -0.35781 -0.0001401 0.9373 0.00036699 0.57949 0.00022689 391.53715635632875 23.005 0.35448 23.005 22.888 23.243 0 39 18 3 0 0 0 0.052168 1 11695 11695 39.95 34.166 1 2511600 21702 760 14711 14993 25690 25690 0.009744856602310392 HYQQHPLHL 9 Unmodified _HYQQHPLHL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5364990234375 3 391.536835 1171.58868 -0.034053 -1.3333E-05 -1.0038 -0.00039302 -1.0378 -0.00040635 391.5364065912024 23.061 0.15266 23.074 22.942 23.095 0.012396 14 7 2 0 0 0 0.052168 1 11718 11718 39.95 34.902 1 5577700 21703 760 14711 14993 25691 25691 0.009744856602310392 HYQQHPLHL 9 Unmodified _HYQQHPLHL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5372619628906 3 391.536835 1171.58868 NaN NaN NaN NaN NaN NaN NaN 22.984 1 23.001 22.501 23.501 0.01749 0 0 0 0.84369 1 11823 11823 1.1933 0.12188 1 21704 760 14711 14993 25692 25692 0.009744856602310392 HYQQHPLHL 9 Unmodified _HYQQHPLHL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.303466796875 2 586.801614 1171.58868 -0.1863 -0.00010932 0.32381 0.00019001 0.13751 8.0691E-05 586.8015757506832 25.475 0.17841 22.592 22.498 22.677 -2.8831 14 9 2 0 0 0 0.012148 1 13984 13984 74.423 49.749 1 2172300 21705 760 14711 14993 25693 25693 0.009744856602310392 HYQYRFLSI 9 Unmodified _HYQYRFLSI_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|13 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5484008789062 3 409.548741 1225.62439 -0.17756 -7.272E-05 1.7499 0.00071668 1.5724 0.00064396 409.5494938537376 21.903 0.33592 21.926 21.785 22.121 0.022896 22 14 2 0 0 0 0.60285 1 11100 11100 1.1933 0 1 771350 + 21706 16786 14712 14994 25694 25694 0.0206052311723397 HYQYRFLSI 9 Unmodified _HYQYRFLSI_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|13 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|13 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 409.548741 1225.62439 -0.17756 -7.272E-05 1.7499 0.00071668 1.5724 0.00064396 409.5494938537376 21.903 0.33592 21.926 21.785 22.121 0.022896 0 0 NaN 1.1933 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 771350 + 21707 16786 14712 14994 0.0206052311723397 HYREDCRTFF 10 Unmodified _HYREDCRTFF_ 0 0 0 ENST00000409911.5_2_2:76975559-76975640:-|nuORF ENST00000409911.5_2_2:76975559-76975640:-|nuORF ENST00000409911.5_2_2:76975559-76975640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.5407409667969 3 458.540028 1372.59825 0.32665 0.00014978 0.038745 1.7766E-05 0.36539 0.00016755 458.53997569544 20.359 0.27028 20.37 20.168 20.439 0.010553 29 15 2 0 0 0 0.713 1 10309 10309 1.4551 0.12547 1 1024100 21708 12970 14713 14995 25695 25695 -0.07314114116593373 HYRHKEIHR 9 Unmodified _HYRHKEIHR_ 0 0 0 REV__ENSG00000088038|ENST00000221232|CNOT3 REV__ENSG00000088038|ENST00000221232|CNOT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 425.5603637695312 3 425.898767 1274.67447 0.10006 4.2617E-05 -4.0786 -0.0017371 -3.9786 -0.0016945 425.8966724106382 25.476 0.36746 22.593 22.309 22.677 -2.8831 36 20 3 0 0 0 0.21572 1 13808 13808 4.5289 0 1 3412400 + 21709 17797 14714 14996 25696 25696 0.04812070565731119 HYRNVFHAF 9 Unmodified _HYRNVFHAF_ 0 0 0 nc|ENSG00000125434|Q3KQZ1-3|SLC25A35;nc|ENSG00000125434|Q3KQZ1-2|SLC25A35;nc|ENSG00000125434|Q3KQZ1-4|SLC25A35;ENSG00000125434|ENST00000577745|SLC25A35 nc|ENSG00000125434|Q3KQZ1-3|SLC25A35 nc|ENSG00000125434|Q3KQZ1-3|SLC25A35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5331420898438 3 397.533313 1189.57811 -0.22656 -9.0065E-05 -0.24135 -9.5944E-05 -0.46791 -0.00018601 397.5332333259342 35.534 0.18909 35.559 35.456 35.645 0.024971 14 8 2 0 0 0 0.41742 1 18792 18792 7.609 4.9777 1 2116200 21710 3849 14715 14997 25697 25697 -0.009094969941997988 HYRRKWSNS 9 Unmodified _HYRRKWSNS_ 0 0 0 REV__nc|ENSG00000074356|Q53F19-2|NCBP3 REV__nc|ENSG00000074356|Q53F19-2|NCBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5472106933594 3 411.879372 1232.61629 0.053994 2.2239E-05 -3.0497 -0.0012561 -2.9957 -0.0012339 411.8777437180688 26.916 0.17805 26.945 26.845 27.023 0.028664 12 7 2 0 0 0 0.57757 1 14012 14012 2.7352 0.10396 1 5925600 + 21711 17550 14716 14998 25698 25698 0.00928388920465295 HYRYYLYNLMF 11 Unmodified _HYRYYLYNLMF_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF;ENST00000486708.1_1_22:31924838-31946432:+|nuORF nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 791.8790283203125 2 791.879204 1581.74386 NaN NaN NaN NaN NaN NaN NaN 14.681 1 14.681 14.181 15.181 0 0 0 0 0.94337 1 7000 7000 0 0 1 21712 10049 14717 14999 25699 25699 -0.023746513203832365 HYSDSILTF 9 Unmodified _HYSDSILTF_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7607421875 2 541.761289 1081.50803 0.20491 0.00011101 -1.779 -0.00096381 -1.5741 -0.0008528 541.7602319415514 62.883 0.48438 62.883 62.589 63.073 0 29 17 2 0 0 0 0.016184 1 35052 35052 67.344 46.89 1 3863300 21713 8384 14718 15000 25700 25700 -0.02946840173331111 HYSDSILTF 9 Unmodified _HYSDSILTF_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.3067626953125 2 541.761289 1081.50803 0.16397 8.8834E-05 1.815 0.00098332 1.979 0.0010722 541.762164982582 63.186 0.43958 62.7 62.622 63.061 -0.48617 34 19 2 0 0 0 0.081537 1 34493 34493 42.095 22.838 1 5025900 21714 8384 14718 15000 25701 25701 -0.02946840173331111 HYSENMFSF 9 Oxidation (M) _HYSENM(Oxidation (M))FSF_ HYSENM(1)FSF HYSENM(44)FSF 0 0 1 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2349853515625 2 589.234581 1176.45461 0.35583 0.00020967 -0.24298 -0.00014317 0.11285 6.6495E-05 589.7359680067309 48.498 0.13909 48.126 48.061 48.2 -0.37172 9 6 2 0 0 0 0.05447 1 26044 26044 43.858 33.784 1 4276700 21715 2966 14719 15001 25702 25702 513 -0.12655960947517997 HYSENNGKRPF 11 Unmodified _HYSENNGKRPF_ 0 0 0 REV__ENST00000484687.1_1_3:81584326-81627079:-|nuORF REV__ENST00000484687.1_1_3:81584326-81627079:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2182312011719 3 450.217942 1347.632 0.56523 0.00025448 -0.23424 -0.00010546 0.33099 0.00014902 450.21777752762983 51.077 0.2456 51.023 50.901 51.147 -0.053875 16 11 2 0 0 0 0.67922 1 27636 27636 2.8433 1.6499 1 2013100 + 21716 18916 14720 15002 25703 25703 -0.027913693531672834 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7657470703125 2 577.766906 1153.51926 0.14111 8.1526E-05 3.7843 0.0021864 3.9254 0.0022679 577.7698695404634 35.698 0.28384 35.698 35.594 35.878 0 28 13 3 0 0 0 0.0077963 1 18874 18874 109.63 71.655 1 5243700 21717 5855 14721 15003 25704 25704 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7662963867188 2 577.766906 1153.51926 -0.3815 -0.00022042 -0.11487 -6.6366E-05 -0.49637 -0.00028678 577.7668138981577 35.886 0.34138 35.663 35.472 35.813 -0.2224 45 14 4 0 0 0 0.010877 2 18771 18771;18878 77.984 56.238 1 51549000 21718 5855 14721 15003 25705;25706 25705 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5134582519531 3 385.513696 1153.51926 -0.44383 -0.0001711 -0.15855 -6.1124E-05 -0.60239 -0.00023223 385.51367909501187 35.911 0.23147 35.688 35.519 35.751 -0.2224 24 9 3 0 0 0 0.023164 1 18806 18806 45.7 38.091 1 6009800 21719 5855 14721 15003 25707 25707 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7664794921875 2 577.766906 1153.51926 0.19561 0.00011301 -0.46642 -0.00026948 -0.27081 -0.00015647 577.7666407951151 35.584 0.22739 35.609 35.474 35.702 0.024967 22 10 3 0 0 0 0.010877 1 18803 18803 77.984 51.101 1 5513700 21720 5855 14721 15003 25708 25708 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7675170898438 2 577.766906 1153.51926 0.28053 0.00016208 0.72105 0.0004166 1.0016 0.00057868 577.7670858149288 39.948 0.51492 35.419 35.203 35.718 -4.5294 99 43 3 0 0 0 0.0018186 3 23681 23681;23813;23954 133.7 89.844 1 131310000 21721 5855 14721 15003 25709;25710;25711 25709 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.848388671875 3 385.513696 1153.51926 0.63962 0.00024658 0.020315 7.8315E-06 0.65993 0.00025441 385.5136733745442 39.953 0.4256 35.423 35.247 35.672 -4.5294 63 36 3 0 0 0 0.016184 2 23852 23716;23852 51.63 40.83 1 41744000 21722 5855 14721 15003 25712;25713 25713 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.8200073242188 2 577.766906 1153.51926 0.55475 0.00032052 3.9014 0.0022541 4.4562 0.0025746 578.2710884197522 40.466 0.048363 35.936 35.904 35.952 -4.5294 4 2 2 0 0 0 0.16785 1 24180 24180 16.942 8.1969 1 5159900 21723 5855 14721 15003 25714 25714 -0.05136018079224414 HYSHYISTF 9 Unmodified _HYSHYISTF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.513696 1153.51926 -0.13465 -5.1908E-05 0.23071 8.8942E-05 0.096066 3.7035E-05 385.5139183445973 35.599 0.16877 35.624 35.494 35.663 0.024971 0.045402 0.00033862 NaN 51.63 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1300800 21724 5855 14721 15003 -0.05136018079224414 HYSKCTGVF 9 Carbamidomethyl (C) _HYSKC(Carbamidomethyl (C))TGVF_ HYSKC(1)TGVF HYSKC(68)TGVF 0 1 0 ENST00000430246.6_1_14:21731784-21731862:-|nuORF ENST00000430246.6_1_14:21731784-21731862:-|nuORF ENST00000430246.6_1_14:21731784-21731862:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7557983398438 2 549.755484 1097.49641 0.26744 0.00014703 -0.23772 -0.00013069 0.029719 1.6338E-05 549.7555065796498 26.314 0.42862 23.363 23.169 23.597 -2.9511 70 23 4 0 0 0 0.015688 2 14538 14412;14538 67.838 41.57 1 92780000 21725 13235 14722 15004 25715;25716 25716 982 -0.04843360468339597 HYSKCTGVFF 10 Carbamidomethyl (C) _HYSKC(Carbamidomethyl (C))TGVFF_ HYSKC(1)TGVFF HYSKC(44)TGVFF 0 1 0 ENST00000430246.6_1_14:21731784-21731862:-|nuORF ENST00000430246.6_1_14:21731784-21731862:-|nuORF ENST00000430246.6_1_14:21731784-21731862:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.29052734375 2 623.289691 1244.56483 0.32254 0.00020104 0.3764 0.00023461 0.69894 0.00043564 623.2900247939054 46.187 0.34947 41.232 41.035 41.384 -4.9549 41 23 2 0 0 0 0.11654 1 28585 28585 43.982 22.235 1 14709000 21726 13235 14723 15005 25717 25717 982 -0.047671158884895704 HYSLFPLLF 9 Unmodified _HYSLFPLLF_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8106079101562 2 568.810585 1135.60662 0.97194 0.00055285 -0.75307 -0.00042836 0.21887 0.0001245 568.810412905093 100.63 0.23356 100.59 100.51 100.74 -0.04216 24 8 5 0 0 0 0.009483 1 55905 55905 93.883 33.494 1 98188000 21727 6622 14724 15006 25718 25718 0.04423807862372087 HYSLFPLLF 9 Unmodified _HYSLFPLLF_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.812255859375 2 568.810585 1135.60662 0.84426 0.00048022 0.57892 0.00032929 1.4232 0.00080952 568.8106774341379 101.69 0.10162 95.513 95.443 95.545 -6.1757 14 4 4 0 0 0 0.014417 1 68243 68243 89.427 47.332 1 162260000 21728 6622 14724 15006 25719 25719 0.04423807862372087 HYSPIYLSF 9 Unmodified _HYSPIYLSF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7825317382812 2 563.782025 1125.5495 0.81172 0.00045763 0.33776 0.00019043 1.1495 0.00064806 563.7820510243118 72.73 0.40958 72.255 72.042 72.451 -0.47588 57 18 4 0 0 0 0.023481 2 39832 39733;39832 77.984 48.903 1 15065000 21729 1279 14725 15007 25720;25721 25721 -0.008256594140220841 HYSPIYLSF 9 Unmodified _HYSPIYLSF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7822265625 2 563.782025 1125.5495 0.64214 0.00036203 -0.76245 -0.00042985 -0.1203 -6.7826E-05 563.7814562320974 72.163 0.65424 72.202 71.914 72.568 0.039024 90 31 4 0 0 0 0.014417 2 39661 39661;39771 77.984 43.882 1 73265000 21730 1279 14725 15007 25722;25723 25722 -0.008256594140220841 HYSPIYLSF 9 Unmodified _HYSPIYLSF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.781005859375 2 563.782025 1125.5495 0.85968 0.00048467 0.22823 0.00012867 1.0879 0.00061334 563.7820102318464 92.665 0.95927 86.489 86.005 86.964 -6.1757 169 59 4 0 0 0 0.036857 3 61130 61130;61256;61376 67.344 44.608 1 133960000 21731 1279 14725 15007 25724;25725;25726 25724 -0.008256594140220841 HYSQELSLLYL 11 Unmodified _HYSQELSLLYL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.3563232421875 2 683.356085 1364.69762 0.59511 0.00040667 -0.1942 -0.00013271 0.40091 0.00027397 683.3554602759706 82.279 0.28961 81.784 81.629 81.919 -0.4952 28 11 3 0 0 0 0.178 1 45011 45011 33.445 18.196 1 2448200 21732 10766 14726 15008 25727 25727 0.029856070492087383 HYSQELSLLYL 11 Unmodified _HYSQELSLLYL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.3585815429688 2 683.356085 1364.69762 1.639 0.00112 -0.34452 -0.00023543 1.2945 0.00088458 683.3563942539706 98.412 0.16009 92.236 92.148 92.308 -6.1757 22 10 3 0 0 0 4.2801E-06 1 65252 65252 96.936 57.723 1 56842000 21733 10766 14726 15008 25728 25728 0.029856070492087383 HYSQELSLLYL 11 Unmodified _HYSQELSLLYL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 683.356085 1364.69762 1.7209 0.001176 -0.12441 -8.5015E-05 1.5965 0.001091 683.3559033274882 81.498 0.27829 81.558 81.425 81.704 0.059929 -0.11286 7.8536E-05 NaN 33.445 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1357300 21734 10766 14726 15008 0.029856070492087383 HYSQGPGK 8 Unmodified _HYSQGPGK_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MSMS AL20221201_MKP_PDAC_01 4 437.21533203125 2 437.214309 872.414065 NaN NaN NaN NaN NaN NaN NaN 92.808 1 86.632 86.132 87.132 -6.1757 0 0 0 0.95201 1 61384 61384 10.183 4.9527 1 21735 5110 14727 15009 25729 25729 -0.027245144849416647 HYSSRLGSAIF 11 Unmodified _HYSSRLGSAIF_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1;ENST00000527649.1_1_11:121498220-121500269:+|nuORF ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.8203125 2 619.319837 1236.62512 0.21859 0.00013538 -1.0218 -0.00063281 -0.8032 -0.00049744 619.3193974249184 44.428 0.18159 44.405 44.325 44.506 -0.022064 16 8 3 0 0 0 0.047603 2 23843 23843;23865 51.415 30.962 1 4991900 21736 4953 14728 15010 25730;25731 25730 0.01627317766269698 HYSSRLGSAIF 11 Unmodified _HYSSRLGSAIF_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1;ENST00000527649.1_1_11:121498220-121500269:+|nuORF ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2150573730469 3 413.21565 1236.62512 -0.18382 -7.5958E-05 0.63564 0.00026266 0.45182 0.0001867 413.21569743566056 44.465 0.22392 44.443 44.303 44.526 -0.022064 15 10 2 0 0 0 0.28407 1 23869 23869 21.799 6.0608 1 7410300 21737 4953 14728 15010 25732 25732 0.01627317766269698 HYSYVCPD 8 Unmodified _HYSYVCPD_ 0 0 0 ENST00000439585.1_1_X:67991699-67992065:+|nuORF ENST00000439585.1_1_X:67991699-67992065:+|nuORF ENST00000439585.1_1_X:67991699-67992065:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.1996154785156 2 492.20001 982.385467 NaN NaN NaN NaN NaN NaN NaN 26.228 1 26.228 25.728 26.728 0 0 0 0 0.93066 1 13476 13476 14.582 0 1 21738 13378 14729 15011 25733 25733 -0.10643000176412443 HYTIVFNTF 9 Unmodified _HYTIVFNTF_ 0 0 0 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000070961|P20020-5|ATP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2884521484375 2 571.287474 1140.5604 0.54054 0.0003088 -0.036765 -2.1004E-05 0.50377 0.0002878 571.28807986145 69.041 0.3875 69.072 68.886 69.273 0.030922 52 18 4 0 0 0 0.040683 1 37900 37900 64.236 51.194 1 7351700 21739 1047;805 14730 15012 25734 25734 -0.004262570397258969 HYTLDCEVNP 10 Unmodified _HYTLDCEVNP_ 0 0 0 REV__nc|ENSG00000114062|Q05086-2|UBE3A REV__nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.756103515625 2 595.760963 1189.50737 0.15531 9.2527E-05 -1.5117 -0.00090062 -1.3564 -0.00080809 595.7597786894705 44.092 0.50779 39.327 38.95 39.458 -4.7648 70 32 3 0 0 0 0.63399 1 26950 26950 9.3831 0.63772 1 15830000 + 21740 18902 14731 15013 25735 25735 -0.07980002884710302 HYTLIVKAL 9 Unmodified _HYTLIVKAL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3234252929688 2 529.32386 1056.63317 0.536 0.00028372 0.010561 5.59E-06 0.54656 0.00028931 529.3238510509941 50.802 0.21368 50.748 50.648 50.862 -0.053875 23 10 3 0 0 0 0.0082485 1 27480 27480 96.285 58.311 1 3332100 21741 1378 14732 15014 25736 25736 0.10711496753697247 HYTLRCLTCF 10 Unmodified _HYTLRCLTCF_ 0 0 0 REV__ENSG00000013561|ENST00000394520|RNF14 REV__ENSG00000013561|ENST00000394520|RNF14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.7998657226562 2 628.799368 1255.58418 NaN NaN NaN NaN NaN NaN NaN 65.242 1 64.757 64.257 65.257 -0.48428 0 0 0 0.92825 1 35602 35602 6.7232 0.51738 1 + 21742 17077 14733 15015 25737 25737 -0.03338482869207837 HYTNGLYSL 9 Unmodified _HYTNGLYSL_ 0 0 0 ENSG00000106560|ENST00000223293|GIMAP2 ENSG00000106560|ENST00000223293|GIMAP2 ENSG00000106560|ENST00000223293|GIMAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2611694335938 2 534.261456 1066.50836 0.56336 0.00030098 -0.67599 -0.00036115 -0.11262 -6.0171E-05 534.2611631797146 47.65 0.22917 47.297 47.223 47.452 -0.3526 17 10 2 0 0 0 0.07916 1 25579 25579 37.974 1.847 1 2279900 21743 2438 14734 15016 25738 25738 -0.022234204534925084 HYTTGLTLM 9 Oxidation (M) _HYTTGLTLM(Oxidation (M))_ HYTTGLTLM(1) HYTTGLTLM(42) 0 0 1 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7581787109375 2 526.757692 1051.50083 0.77901 0.00041035 0.68297 0.00035976 1.462 0.00077011 526.7581551236698 38.891 0.2228 38.891 38.747 38.97 0 16 9 2 0 0 0 0.06187 1 20799 20799 42.095 18.074 1 4162900 21744 1108 14735 15017 25739 25739 183 -0.022858960454186672 HYTTGLTLM 9 Oxidation (M) _HYTTGLTLM(Oxidation (M))_ HYTTGLTLM(1) HYTTGLTLM(110) 0 0 1 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7577514648438 2 526.757692 1051.50083 -0.10908 -5.7458E-05 -0.40265 -0.0002121 -0.51173 -0.00026956 526.7574960845083 39.133 0.22022 38.846 38.741 38.961 -0.28687 20 9 3 0 0 0 0.0077963 1 20625 20625 109.63 48.272 1 7252200 21745 1108 14735 15017 25740 25740 183 -0.022858960454186672 HYTTGLTLM 9 Oxidation (M) _HYTTGLTLM(Oxidation (M))_ HYTTGLTLM(1) HYTTGLTLM(110) 0 0 1 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.75732421875 2 526.757692 1051.50083 -0.12031 -6.3374E-05 0.26076 0.00013736 0.14045 7.3985E-05 526.7576881041763 39.371 0.1829 39.084 38.981 39.164 -0.28687 16 8 2 0 0 0 0.0077963 1 20742 20742 109.63 41.549 1 6094600 21746 1108 14735 15017 25741 25741 183 -0.022858960454186672 HYTTGLTLM 9 Oxidation (M) _HYTTGLTLM(Oxidation (M))_ HYTTGLTLM(1) HYTTGLTLM(54) 0 0 1 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MSMS AL20221201_MKP_PDAC_01 4 526.27197265625 2 526.757692 1051.50083 NaN NaN NaN NaN NaN NaN NaN 44.542 1 39.69 39.19 40.19 -4.852 0 0 0 0.060495 1 27206 27206 53.576 19.473 1 21747 1108 14735 15017 25742 25742 183 -0.022858960454186672 HYTTGLTLM 9 Unmodified _HYTTGLTLM_ 0 0 0 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7604370117188 2 518.760235 1035.50592 1.4535 0.00075401 -1.2759 -0.0006619 0.17756 9.2113E-05 518.7600161705178 58.988 0.44815 52.914 52.702 53.15 -6.0745 61 24 3 0 0 0 0.0086629 2 37760 37760;37899 101.72 61.765 1 42200000 21748 1108 14735 15018 25743;25744 25743 -0.010415921827870989 HYTTGLTLM 9 Unmodified _HYTTGLTLM_ 0 0 0 nc|ENSG00000073605|Q8TAX9-6|GSDMB;ENSG00000073605|ENST00000418519|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB nc|ENSG00000073605|Q8TAX9-6|GSDMB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.760235 1035.50592 0.2654 0.00013768 -0.128 -6.6401E-05 0.1374 7.1278E-05 518.7604237209138 53.099 0.16879 52.648 52.554 52.723 -0.45173 -0.13319 0.00095027 NaN 101.72 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1597100 21749 1108 14735 15018 -0.010415921827870989 HYTVLGDAF 9 Unmodified _HYTVLGDAF_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7507934570312 2 511.750724 1021.4869 0.22886 0.00011712 -1.0322 -0.00052825 -0.80339 -0.00041114 511.74998363035314 56.675 0.31381 56.675 56.45 56.763 0 20 13 2 0 0 0 0.06187 1 31505 31505 42.095 28.587 1 1830600 21750 2482 14736 15019 25745 25745 -0.02298805482178068 HYTYILEVF 9 Unmodified _HYTYILEVF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8023071289062 2 592.802957 1183.59136 0.076849 4.5556E-05 0.6798 0.00040299 0.75665 0.00044855 592.8032335945276 82.318 0.39561 82.318 82.084 82.48 0 41 17 3 0 0 0 0.03327 2 45619 45619;45718 53.576 36.633 1 1765000 21751 6085 14737 15020 25746;25747 25746 0.006908962745228564 HYTYILEVF 9 Unmodified _HYTYILEVF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8026123046875 2 592.802957 1183.59136 0.61586 0.00036508 -0.21883 -0.00012973 0.39703 0.00023536 592.8025343430224 82.712 1.7729 82.215 81.495 83.268 -0.49751 188 73 5 0 0 0 0.0086179 6 45301 45200;45301;45402;45513;45643;45756 89.427 47.332 1 74481000 21752 6085 14737 15020 25748;25749;25750;25751;25752;25753 25749 0.006908962745228564 HYTYILEVF 9 Unmodified _HYTYILEVF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.80322265625 2 592.802957 1183.59136 1.5525 0.00092034 -1.1397 -0.00067564 0.41279 0.0002447 592.8020014930515 82.02 0.86786 82.082 81.661 82.529 0.062004 95 34 4 0 0 0 0.0094915 2 45276 45276;45383 81.864 45.82 1 77439000 21753 6085 14737 15020 25754;25755 25754 0.006908962745228564 HYTYILEVF 9 Unmodified _HYTYILEVF_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3017578125 2 592.802957 1183.59136 -0.00091404 -5.4185E-07 -0.77607 -0.00046006 -0.77698 -0.0004606 592.8027338476977 98.819 0.31381 92.643 92.414 92.728 -6.1757 80 23 4 0 0 0 0.013472 2 65503 65503;65679 70.716 42.229 1 524900000 21754 6085 14737 15020 25756;25757 25756 0.006908962745228564 HYVCESCDKQF 11 Unmodified _HYVCESCDKQF_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.7833251953125 2 679.77883 1357.54311 0.27314 0.00018567 -1.0263 -0.00069765 -0.75315 -0.00051198 680.7807595361603 48.712 0.2225 48.34 48.258 48.48 -0.37172 26 12 3 0 0 0 0.69155 1 26200 26200 10.074 5.7447 1 12615000 21755 2085 14738 15021 25758 25758 -0.1213628869936656 HYVDLKDRPFF 11 Unmodified _HYVDLKDRPFF_ 0 0 0 nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1 nc|ENSG00000243678|P22392-2|NME2 nc|ENSG00000243678|P22392-2|NME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.5818481445312 3 479.582221 1435.72483 0.95087 0.00045602 1.1471 0.00055011 2.0979 0.0010061 479.58223049831713 50.188 0.22454 49.796 49.627 49.851 -0.3923 20 10 3 0 0 0 0.50268 1 27031 27031 16.275 14.022 1 2100900 21756 16576 14739 15022 25759 25759 0.024401353801977166 HYVDLKDRPFF 11 Unmodified _HYVDLKDRPFF_ 0 0 0 nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1 nc|ENSG00000243678|P22392-2|NME2 nc|ENSG00000243678|P22392-2|NME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.9170837402344 3 479.582221 1435.72483 1.1615 0.00055703 -0.10221 -4.9017E-05 1.0593 0.00050801 479.5821762317291 49.866 0.24354 49.817 49.683 49.927 -0.048824 20 11 2 0 0 0 0.31264 1 26948 26948 26.121 23.868 1 4294500 21757 16576 14739 15022 25760 25760 0.024401353801977166 HYVDLKDRPFF 11 Unmodified _HYVDLKDRPFF_ 0 0 0 nc|ENSG00000243678|P22392-2|NME2;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;ENSG00000239672|ENST00000393196|NME1;nc|ENSG00000239672|P15531-2|NME1 nc|ENSG00000243678|P22392-2|NME2 nc|ENSG00000243678|P22392-2|NME2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.7657470703125 3 479.582221 1435.72483 0.23655 0.00011345 -0.12061 -5.7842E-05 0.11594 5.5605E-05 479.58231607983714 84.678 0.19147 78.502 78.445 78.636 -6.1757 18 10 2 0 0 0 0.30515 1 55694 55694 3.8459 1.4111 1 9560200 21758 16576 14739 15022 25761 25761 0.024401353801977166 HYVEKPSTF 9 Unmodified _HYVEKPSTF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2770385742188 2 554.277106 1106.53966 0.010703 5.9326E-06 -0.35161 -0.00019489 -0.34091 -0.00018896 554.2768253770055 24.564 0.26974 24.564 24.448 24.718 0 40 15 3 0 0 0 0.040683 2 12533 12533;12629 49.554 33.707 1 9621000 21759 16251 14740 15023 25762;25763 25762 -0.009348474193984657 HYVEKPSTF 9 Unmodified _HYVEKPSTF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8537902832031 3 369.85383 1106.53966 1.0513 0.00038883 -0.39187 -0.00014494 0.65942 0.00024389 369.8538839117067 28.018 0.32619 24.87 24.751 25.077 -3.1482 24 17 2 0 0 0 0.23158 1 15582 15582 14.405 6.2499 1 6973500 21760 16251 14740 15023 25764 25764 -0.009348474193984657 HYVGSAAAF 9 Unmodified _HYVGSAAAF_ 0 0 0 nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7240295410156 2 461.72451 921.434466 -0.29672 -0.000137 -0.061666 -2.8473E-05 -0.35838 -0.00016547 461.7242738404827 32.969 0.23689 32.969 32.831 33.068 0 28 11 4 0 0 0 0.0094915 1 17245 17245 81.864 45.82 1 3503500 21761 4418 14741 15024 25765 25765 -0.02939343825164542 HYVGSAAAF 9 Unmodified _HYVGSAAAF_ 0 0 0 nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7271118164062 2 461.72451 921.434466 1.234 0.00056977 2.831 0.0013071 4.065 0.0018769 461.72520462007896 37.549 0.31758 33.266 33.102 33.42 -4.2835 30 18 2 0 0 0 0.0094915 2 22013 21980;22013 81.864 60.117 1 9266000 21762 4418 14741 15024 25766;25767 25767 -0.02939343825164542 HYVTELAEL 9 Unmodified _HYVTELAEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7763061523438 2 537.776939 1073.53933 -0.50443 -0.00027127 0.76421 0.00041097 0.25978 0.00013971 537.7772562836723 55.426 0.36955 55.426 55.241 55.611 0 52 16 4 0 0 0 0.0086179 2 30726 30726;30834 89.427 41.081 1 53183000 21763 6889 14742 15025 25768;25769 25768 0.005497328607589225 HYVTELAEL 9 Unmodified _HYVTELAEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.775390625 2 537.776939 1073.53933 -0.33498 -0.00018015 -1.9218 -0.0010335 -2.2568 -0.0012136 537.7758562894663 55.94 0.36676 55.462 55.213 55.58 -0.47798 28 17 2 0 0 0 0.0086179 1 30345 30345 89.427 47.332 1 7018800 21764 6889 14742 15025 25770 25770 0.005497328607589225 HYVTPVKAG 9 Unmodified _HYVTPVKAG_ 0 0 0 ENSG00000166902|ENST00000300151|MRPL16 ENSG00000166902|ENST00000300151|MRPL16 ENSG00000166902|ENST00000300151|MRPL16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2702331542969 2 486.269084 970.523616 NaN NaN NaN NaN NaN NaN NaN 100.67 1 100.63 100.13 101.13 -0.04216 0 0 0 0.7243 1 55925 55925 8.5933 3.3626 1 21765 7548 14743 15026 25771 25771 0.0371749113437545 HYWSLGAGMMF 11 Unmodified _HYWSLGAGMMF_ 0 0 0 REV__ENSG00000014824|ENST00000264451|SLC30A9 REV__ENSG00000014824|ENST00000264451|SLC30A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.8601989746094 3 433.859821 1298.55763 0.14684 6.3708E-05 0.88051 0.00038202 1.0273 0.00044572 433.8601359740752 29.822 0.4163 29.852 29.653 30.07 0.030106 45 16 4 0 0 0 0.70701 1 15655 15655 1.4551 0 1 28956000 + 21766 17082 14744 15027 25772 25772 -0.07970171760553058 HYWWFHRPSYE 11 Unmodified _HYWWFHRPSYE_ 0 0 0 REV__ENSG00000164023|ENST00000690982|SGMS2 REV__ENSG00000164023|ENST00000690982|SGMS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.3641357421875 2 804.362567 1606.71058 NaN NaN NaN NaN NaN NaN NaN 62.527 1 62.527 62.027 63.027 0 0 0 0 0.94301 1 34877 34877 0.35063 0 1 + 21767 21849 14745 15028 25773 25773 -0.06850517048042093 HYYDQEKKRYW 11 Unmodified _HYYDQEKKRYW_ 0 0 0 REV__ENST00000552265.2_1_12:111822376-111823062:+|nuORF REV__ENST00000552265.2_1_12:111822376-111823062:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.3862915039062 2 808.386239 1614.75793 NaN NaN NaN NaN NaN NaN NaN 87.831 1 87.831 87.331 88.331 0 0 0 0 0.9435 1 48627 48627 0 0 1 + 21768 28725 14746 15029 25774 25774 -0.024862825677246292 HYYKAFLLL 9 Unmodified _HYYKAFLLL_ 0 0 0 REV__nc|ENSG00000185133|Q15735-3|INPP5J REV__nc|ENSG00000185133|Q15735-3|INPP5J MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2005310058594 3 389.890215 1166.64882 0.62721 0.00024454 -2.4168 -0.00094229 -1.7896 -0.00069774 389.88893176517445 52.645 0.12351 52.586 52.526 52.65 -0.058918 7 5 2 0 0 0 0.21404 1 28553 28553 2.7352 0 1 844970 + 21769 23477 14747 15030 25775 25775 0.07215783270748943 HYYKVFLEWP 10 Unmodified _HYYKVFLEWP_ 0 0 0 REV__nc|ENSG00000198863|Q96C34-2|RUNDC1 REV__nc|ENSG00000198863|Q96C34-2|RUNDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3505859375 2 691.350606 1380.68666 NaN NaN NaN NaN NaN NaN NaN 76.881 1 76.881 76.381 77.381 0 0 0 0 1.0024 1 42738 42738 0.40072 0 1 + 21770 24082 14748 15031 25776 25776 0.011542494655486735 HYYRRKNI 8 Unmodified _HYYRRKNI_ 0 0 0 ENST00000372004.7_1_20:46256675-46256735:+|nuORF ENST00000372004.7_1_20:46256675-46256735:+|nuORF ENST00000372004.7_1_20:46256675-46256735:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.0504150390625 3 383.880713 1148.62031 0.55512 0.0002131 2.6326 0.0010106 3.1877 0.0012237 384.2159791368962 47.546 0.1259 47.507 47.435 47.561 -0.038643 10 5 2 0 0 0 8.7369 1 25627 25627 1.8442 0 1 1545100 21771 12370 14749 15032 25777 25777 0.05194478414182413 IAAAAADAPPP 11 Unmodified _IAAAAADAPPP_ 0 0 0 REV__nc|ENSG00000214357|A8MQ27-2|NEURL1B REV__nc|ENSG00000214357|A8MQ27-2|NEURL1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7580261230469 2 482.758549 963.502546 0.6972 0.00033658 -0.93401 -0.0004509 -0.23681 -0.00011432 482.7584216499954 44.518 0.45234 39.666 39.452 39.905 -4.852 67 36 3 0 0 0 0.39552 1 27094 27094 21.747 1.293 1 64989000 + 21772 24310 14750 15033 25778 25778 0.019334810348368592 IAAEYREKN 9 Unmodified _IAAEYREKN_ 0 0 0 REV__nc|ENSG00000116871|Q3KQU3-2|MAP7D1 REV__nc|ENSG00000116871|Q3KQU3-2|MAP7D1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.8209228515625 2 547.285463 1092.55637 0.59063 0.00032324 -3.1677 -0.0017337 -2.5771 -0.0014104 547.2839647682663 42.187 0.33079 37.502 37.317 37.648 -4.6846 30 20 2 0 0 0 0.17331 1 25323 25323 17.113 5.6182 1 10996000 + 21773 19069 14751 15034 25779 25779 0.01379653466574382 IAAGIFNDL 9 Unmodified _IAAGIFNDL_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.5042724609375 1 933.504009 932.496732 0.76936 0.0007182 -0.95888 -0.00089512 -0.18952 -0.00017692 933.5030909906579 80.941 0.35509 80.448 80.227 80.582 -0.49247 38 15 3 0 0 0 0.013323 2 44341 44244;44341 71.134 13.662 1 5466400 21774 4883 14752 15035 25780;25781 25781 0.027783825231722403 IAAGIFNDL 9 Unmodified _IAAGIFNDL_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2552185058594 2 467.255643 932.496732 0.7753 0.00036226 -0.34236 -0.00015997 0.43294 0.00020229 467.25549646330046 80.976 0.3103 80.483 80.251 80.561 -0.49247 28 13 3 0 0 0 0.16776 1 44260 44260 26.341 0 1 1858100 21775 4883 14752 15035 25782 25782 0.027783825231722403 IAAGIFNDL 9 Unmodified _IAAGIFNDL_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.5089111328125 1 933.504009 932.496732 1.2456 0.0011628 0.26091 0.00024356 1.5065 0.0014064 933.5043059325641 88.412 0.53824 82.237 81.939 82.477 -6.1757 49 29 2 0 0 0 0.00012323 2 58276 58276;58419 152.41 44.415 1 18558000 21776 4883 14752 15035 25783;25784 25783 0.027783825231722403 IAAGIFNDL 9 Unmodified _IAAGIFNDL_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 467.255643 932.496732 0.49385 0.00023076 0.54353 0.00025397 1.0374 0.00048472 467.25580622822673 80.461 0.18359 80.461 80.335 80.519 0 -0.011254 0.00065039 NaN 26.341 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 594980 21777 4883 14752 15035 0.027783825231722403 IAANLIAFL 9 Unmodified _IAANLIAFL_ 0 0 0 ENSG00000156222|ENST00000394573|SLC28A1 ENSG00000156222|ENST00000394573|SLC28A1 ENSG00000156222|ENST00000394573|SLC28A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2929382324219 2 473.292028 944.569503 0.83128 0.00039344 1.2363 0.00058513 2.0676 0.00097857 473.29269335441364 101.47 0.11929 95.298 95.211 95.33 -6.1757 8 5 2 0 0 0 0.019979 1 68098 68098 63.563 3.7676 1 15695000 21778 6440 14753 15036 25785 25785 0.09500136316592034 IAAQACFMY 9 Carbamidomethyl (C),Oxidation (M) _IAAQAC(Carbamidomethyl (C))FM(Oxidation (M))Y_ IAAQAC(1)FMY IAAQACFM(1)Y IAAQAC(57)FMY IAAQACFM(57)Y 0 1 1 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MSMS AL20221201_MKP_PDAC_01 4 545.7383422851562 2 545.738445 1089.46234 NaN NaN NaN NaN NaN NaN NaN 56.526 1 50.549 50.049 51.049 -5.9769 0 0 0 0.052454 1 36080 36080 56.541 44.901 1 21779 3739 14754 15037 25786 25786 370 652 -0.07881524951562824 IACGSHVTY 9 Carbamidomethyl (C) _IAC(Carbamidomethyl (C))GSHVTY_ IAC(1)GSHVTY IAC(93)GSHVTY 0 1 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2340087890625 2 504.234384 1006.45422 0.53598 0.00027026 -0.31981 -0.00016126 0.21617 0.000109 504.234276777651 26.982 0.28629 23.945 23.796 24.082 -3.0365 28 14 3 0 0 0 0.0082281 1 14894 14894 92.822 54.671 1 21031000 21780 3974 14755 15038 25787 25787 401 -0.04875335876704412 IACIESHQF 9 Carbamidomethyl (C) _IAC(Carbamidomethyl (C))IESHQF_ IAC(1)IESHQF IAC(89)IESHQF 0 1 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1 ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7615356445312 2 552.760766 1103.50698 0.7271 0.00040191 -0.52589 -0.00029069 0.20121 0.00011122 552.7607502863094 43.144 0.72687 38.379 37.854 38.581 -4.7648 99 48 4 0 0 0 0.0086722 1 26126 26126 88.954 56.648 1 70510000 21781 10189;3222 14756 15039 25788 25788 332 -0.04063377813895386 IACKECNDGHF 11 Unmodified _IACKECNDGHF_ 0 0 0 REV__nc|ENSG00000053747|Q16787-3|LAMA3 REV__nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.7599487304688 2 618.76044 1235.50633 0.2203 0.00013631 -1.3602 -0.00084161 -1.1399 -0.0007053 618.759366639921 51.824 0.37003 51.824 51.583 51.953 0 41 16 4 0 0 0 0.63851 1 28617 28617 9.3831 3.6513 1 7122800 + 21782 17278 14757 15040 25789 25789 -0.10200540525261204 IACKECNDGHF 11 Unmodified _IACKECNDGHF_ 0 0 0 REV__nc|ENSG00000053747|Q16787-3|LAMA3 REV__nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 618.76044 1235.50633 0.2203 0.00013631 -1.3602 -0.00084161 -1.1399 -0.0007053 618.759366639921 51.824 0.37003 51.824 51.583 51.953 0 0 0 NaN 9.3831 41 16 4 NaN NaN NaN NaN 0 NaN NaN 0 7122800 + 21783 17278 14757 15040 -0.10200540525261204 IADELDQLE 9 Unmodified _IADELDQLE_ 0 0 0 REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.256103515625 2 523.256037 1044.49752 0.22678 0.00011866 0.56516 0.00029573 0.79194 0.00041439 523.2562162351642 40.4 0.19589 40.4 40.236 40.432 0 15 9 3 0 0 0 0.047196 1 21663 21663 46.021 0 1 3913900 + 21784 17179 14758 15041 25790 25790 -0.02294867618434182 IADISQVY 8 Unmodified _IADISQVY_ 0 0 0 ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6 ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENST00000554843.5_1_14:35761682-35780127:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4730834960938 1 908.472374 907.465098 0.43788 0.0003978 0.026271 2.3866E-05 0.46415 0.00042167 908.4723387800183 49.784 0.36082 49.784 49.606 49.966 0 50 16 4 0 0 0 0.21583 1 27357 27357 67.344 3.1075 1 45117000 21785 1887 14759 15042 25791 25791 0.007663897692282262 IADISQVY 8 Unmodified _IADISQVY_ 0 0 0 ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6 ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENST00000554843.5_1_14:35761682-35780127:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2411499023438 2 454.739825 907.465098 0.35011 0.00015921 0.58528 0.00026615 0.93539 0.00042536 454.74006232981895 57.966 0.43864 51.938 51.717 52.156 -6.0275 39 24 2 0 0 0 0.17035 1 37041 37041 81.864 21.474 1 71405000 21786 1887 14759 15042 25792 25792 0.007663897692282262 IADISQVY 8 Unmodified _IADISQVY_ 0 0 0 ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF;nc|ENSG00000100902|P60900-2|PSMA6 ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENST00000554843.5_1_14:35761682-35780127:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 908.473388671875 1 908.472374 907.465098 0.0044754 4.0658E-06 0.1124 0.00010211 0.11688 0.00010618 908.4728951886945 57.953 0.42315 51.926 51.717 52.14 -6.0275 43 23 2 0 0 0 0.17035 1 37146 37146 81.864 7.4413 1 67263000 21787 1887 14759 15042 25793 25793 0.007663897692282262 IADISYSVAY 10 Unmodified _IADISYSVAY_ 0 0 0 ENSG00000187714|ENST00000374115|SLC18A3 ENSG00000187714|ENST00000374115|SLC18A3 ENSG00000187714|ENST00000374115|SLC18A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.27685546875 2 551.276772 1100.53899 0.39913 0.00022003 0.33737 0.00018598 0.7365 0.00040602 551.2766729374565 87.479 0.52606 87.479 87.17 87.696 0 68 24 4 0 0 0 0.52888 1 48416 48416 14.838 3.198 1 4047400 21788 9584 14760 15043 25794 25794 -0.0072568685909573105 IADNLPVA 8 Unmodified _IADNLPVA_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.4525146484375 1 812.451245 811.443968 0.29032 0.00023587 1.5912 0.0012927 1.8815 0.0015286 812.452642934671 46.575 0.26255 46.575 46.436 46.698 0 18 11 2 0 0 0 0.46494 1 25425 25425 38.151 6.0342 1 2041000 21789 1948 14761 15044 25795 25795 0.030704244603612096 IADPSSPEL 9 Unmodified _IADPSSPEL_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.46337890625 1 928.462204 927.454927 -0.24791 -0.00023018 -0.12096 -0.00011231 -0.36888 -0.00034249 928.4622815520348 41.289 0.24824 41.289 41.137 41.385 0 30 11 3 0 0 0 0.0083938 2 22192 22192;22307 108 50.526 1 8494700 21790 4289 14762 15045 25796;25797 25796 -0.011702179559961223 IADPSSPEL 9 Unmodified _IADPSSPEL_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7349853515625 2 464.73474 927.454927 -0.01573 -7.3101E-06 0.058272 2.7081E-05 0.042543 1.9771E-05 464.73476629041113 41.228 0.26762 41.228 41.137 41.404 0 22 12 2 0 0 0 0.019303 1 22213 22213 64.236 0.67347 1 6232100 21791 4289 14762 15045 25798 25798 -0.011702179559961223 IADPSSPEL 9 Unmodified _IADPSSPEL_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.46337890625 1 928.462204 927.454927 1.0338 0.00095985 -0.73096 -0.00067867 0.30284 0.00028118 928.4614779790068 48.56 0.2962 43.164 42.962 43.258 -5.3961 28 17 2 0 0 0 0.0026776 1 30166 30166 128.37 46.752 1 12976000 21792 4289 14762 15045 25799 25799 -0.011702179559961223 IADRLNVEF 9 Unmodified _IADRLNVEF_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7907104492188 2 538.790381 1075.56621 -1.0727 -0.00057795 1.2661 0.00068215 0.19339 0.0001042 538.790729792001 56.399 0.21184 55.914 55.748 55.96 -0.48554 18 10 3 0 0 0 0.11412 1 30590 30590 33.445 2.1766 1 4789200 21793 1999 14763 15046 25800 25800 0.03144841471953441 IAEEKTSIQL 10 Unmodified _IAEEKTSIQL_ 0 0 0 REV__ENSG00000099260|ENST00000263174|PALMD REV__ENSG00000099260|ENST00000263174|PALMD MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.31787109375 2 566.316428 1130.6183 0.91022 0.00051547 0.19091 0.00010811 1.1011 0.00062358 566.316988375285 35.474 0.48353 31.281 31.057 31.541 -4.1928 42 29 2 0 0 0 0.45406 1 20611 20611 16.149 2.2431 1 7990300 + 21794 17970 14764 15047 25801 25801 0.058219600950678796 IAEESNPPL 9 Unmodified _IAEESNPPL_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-2|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2490539550781 2 485.248015 968.481476 -0.011691 -5.6729E-06 1.0151 0.00049256 1.0034 0.00048689 485.2484635128833 35.532 0.23213 35.532 35.442 35.674 0 16 11 2 0 0 0 0.34999 1 18803 18803 14.838 0 1 4333000 21795 6059 14765 15048 25802 25802 -0.004025290646723079 IAFEHPEEVDY 11 Unmodified _IAFEHPEEVDY_ 0 0 0 nc|ENSG00000117906|Q14257-2|RCN2;ENSG00000117906|ENST00000394885|RCN2;ENST00000560833.1_1_15:77236155-77240950:+|nuORF nc|ENSG00000117906|Q14257-2|RCN2 nc|ENSG00000117906|Q14257-2|RCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.8070678710938 2 674.806425 1347.5983 -0.46659 -0.00031486 0.34377 0.00023198 -0.12282 -8.2879E-05 674.8066804231215 48.392 0.19857 48.392 48.313 48.511 0 22 9 3 0 0 0 0.020907 1 26553 26553 79.596 64.348 1 3887900 21796 3342 14766 15049 25803 25803 -0.06159835635571653 IAFFDVRTF 9 Unmodified _IAFFDVRTF_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2991333007812 2 558.297842 1114.58113 1.511 0.00084357 0.41662 0.0002326 1.9276 0.0010762 558.2980094728229 82.505 0.44069 82.567 82.347 82.788 0.062004 38 16 3 0 0 0 0.014417 2 45693 45592;45693 69.105 29.148 1 15097000 21797 16175 14767 15050 25804;25805 25805 0.028423333399359763 IAFFDVRTF 9 Unmodified _IAFFDVRTF_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2861328125 2 558.297842 1114.58113 1.4952 0.00083476 0.048124 2.6868E-05 1.5433 0.00086163 558.2978374111221 97.668 0.22011 91.492 91.366 91.587 -6.1757 23 13 2 0 0 0 0.1685 1 64698 64698 26.268 9.1552 1 54322000 21798 16175 14767 15050 25806 25806 0.028423333399359763 IAFHLNPRF 9 Unmodified _IAFHLNPRF_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2102661132812 3 372.210059 1113.60835 NaN NaN NaN NaN NaN NaN NaN 56.221 1 56.153 55.653 56.653 -0.068737 0 0 0 0.3031 1 30573 30573 24.991 17.889 1 21799 7822 14768 15051 25807 25807 0.056088616709757844 IAFLFYSLIN 10 Unmodified _IAFLFYSLIN_ 0 0 0 REV__ATP10D|p.S1262N|1|0.18|ENSG00000145246|chr4:47587050-47587050|G/A|missense_variant REV__ATP10D|p.S1262N|1|0.18|ENSG00000145246|chr4:47587050-47587050|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8946228027344 3 400.893625 1199.65905 -0.54841 -0.00021985 2.4817 0.00099491 1.9333 0.00077505 400.894985816237 19.02 0.14632 19.02 18.931 19.078 0 25 13 3 0 0 0 0.69126 1 9473 9473 3.8763 2.4212 1 947800 + 21800 16734 14769 15052 25808 25808 0.06720346205338501 IAFNEPLSF 9 Unmodified _IAFNEPLSF_ 0 0 0 ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2693481445312 2 519.26875 1036.52295 0.43518 0.00022598 0.79811 0.00041444 1.2333 0.00064041 519.2689726018516 83.594 0.37936 83.097 82.864 83.243 -0.49751 35 15 3 0 0 0 0.042911 1 45740 45740 48.346 17.709 1 1918300 21801 4240 14770 15053 25809 25809 0.006146516946500924 IAFSNVFEHY 10 Unmodified _IAFSNVFEHY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7950439453125 2 613.795663 1225.57677 NaN NaN NaN NaN NaN NaN NaN 69.735 1 69.255 68.755 69.755 -0.47903 0 0 0 0.92825 1 38123 38123 6.7232 1.4925 1 21802 7010 14771 15054 25810 25810 -0.026991758735903204 IAFWMKVR 8 Unmodified _IAFWMKVR_ 0 0 0 REV__ENST00000409434.5_1_2:99938658-99944097:-|nuORF REV__ENST00000409434.5_1_2:99938658-99944097:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1866149902344 3 350.868757 1049.58444 1.6614 0.00058293 2.0444 0.00071732 3.7058 0.0013003 350.86963319427076 35.004 0.3523 30.909 30.752 31.105 -4.0951 28 20 2 0 0 0 8.7369 1 20166 20166 10.824 6.2951 1 12087000 + 21803 26689 14772 15055 25811 25811 0.06163304912956846 IAGFKLTS 8 Unmodified _IAGFKLTS_ 0 0 0 REV__ENSG00000198765|ENST00000369522|SYCP1 REV__ENSG00000198765|ENST00000369522|SYCP1 MSMS AL20221201_MKP_PDAC_01 4 418.7459411621094 2 418.747453 835.480354 NaN NaN NaN NaN NaN NaN NaN 22.928 1 20.149 19.649 20.649 -2.7784 0 0 0 0.97444 1 12372 12372 2.8892 0 1 + 21804 24055 14773 15056 25812 25812 0.056033013570868206 IAGHLLRSYRS 11 Unmodified _IAGHLLRSYRS_ 0 0 0 ENSG00000122971|ENST00000242592|ACADS ENSG00000122971|ENST00000242592|ACADS ENSG00000122971|ENST00000242592|ACADS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.9109191894531 3 424.910561 1271.70985 -0.53078 -0.00022553 4.2341 0.0017991 3.7033 0.0015736 424.9123645159868 33.224 0.27687 33.224 33.088 33.365 0 23 13 2 0 0 0 0.66568 1 17410 17410 7.4771 0.84669 1 1759300 21805 3674 14774 15057 25813 25813 0.08486688302878065 IAGIAIPAM 9 Oxidation (M) _IAGIAIPAM(Oxidation (M))_ IAGIAIPAM(1) IAGIAIPAM(46) 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 872.4928588867188 1 872.491001 871.483725 -0.29799 -0.00025999 2.4194 0.0021109 2.1214 0.0018509 872.4932770529408 59.124 0.51304 58.633 58.474 58.987 -0.49079 31 23 2 0 0 0 0.047696 2 32127 32127;32257 45.75 24.879 1 1468000 21806 3224;607 14775 15058 25814;25815 25814 88 0.04284228139442803 IAGIAIPAM 9 Oxidation (M) _IAGIAIPAM(Oxidation (M))_ IAGIAIPAM(1) IAGIAIPAM(46) 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7489013671875 2 436.749139 871.483725 0.27858 0.00012167 -0.072928 -3.1851E-05 0.20565 8.9819E-05 436.749116777524 59.328 0.57479 58.838 58.432 59.007 -0.49079 55 26 3 0 0 0 0.047696 1 32236 32236 45.75 24.879 1 2471300 21807 3224;607 14775 15058 25816 25816 88 0.04284228139442803 IAGIAIPAM 9 Oxidation (M) _IAGIAIPAM(Oxidation (M))_ IAGIAIPAM(1) IAGIAIPAM(80) 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7489929199219 2 436.749139 871.483725 0.7184 0.00031376 -0.87353 -0.00038151 -0.15513 -6.7753E-05 436.7488416425599 66.466 0.52657 60.291 59.977 60.503 -6.1757 39 29 2 0 0 0 0.01018 1 43213 43213 79.935 23.886 1 7285900 21808 3224;607 14775 15058 25817 25817 88 0.04284228139442803 IAGIAIPAM 9 Unmodified _IAGIAIPAM_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20221201_MKP_PDAC_01 4 856.4986572265625 1 856.496087 855.48881 0.89449 0.00076613 0.21095 0.00018068 1.1054 0.0009468 856.4965028421083 87.172 0.52647 80.996 80.751 81.277 -6.1757 47 28 3 0 0 0 0.047696 3 57384 57384;57446;57512 45.75 9.2838 1 18188000 21809 3224;607 14775 15059 25818;25819;25820 25818 0.05528532002051634 IAGIAIPAM 9 Unmodified _IAGIAIPAM_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;ENST00000524233.1_1_8:101280952-101287235:-|nuORF;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MSMS AL20221201_MKP_PDAC_01 4 428.7524108886719 2 428.751682 855.48881 NaN NaN NaN NaN NaN NaN NaN 87.162 1 80.986 80.486 81.486 -6.1757 0 0 0 0.09083 1 57466 57466 45.75 17.577 1 21810 3224;607 14775 15059 25821 25821 0.05528532002051634 IAGMEPEQAL 10 Unmodified _IAGMEPEQAL_ 0 0 0 REV__ENST00000591991.1_1_19:5667238-5667808:+|nuORF REV__ENST00000591991.1_1_19:5667238-5667808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7659301757812 2 529.762975 1057.5114 0.57524 0.00030474 -0.21944 -0.00011625 0.3558 0.00018849 529.7639939197666 66.982 0.52755 66.982 66.839 67.366 0 36 23 2 0 0 0 0.6606 1 37316 37316 7.2892 0.56607 1 1699500 + 21811 29170 14776 15060 25822 25822 -0.01505913390974456 IAGSKALEY 9 Unmodified _IAGSKALEY_ 0 0 0 nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2601623535156 2 476.260925 950.507297 0.23653 0.00011265 1.8634 0.00088746 2.0999 0.0010001 476.26231341141903 31.521 0.24055 31.521 31.379 31.619 0 25 11 4 0 0 0 0.037253 1 16391 16391 51.415 17.014 1 6671800 21812 2745 14777 15061 25823 25823 0.030063651776117695 IAGSKALEY 9 Unmodified _IAGSKALEY_ 0 0 0 nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2620544433594 2 476.260925 950.507297 1.2935 0.00061603 0.97041 0.00046217 2.2639 0.0010782 476.26154302328314 35.816 0.4263 31.623 31.394 31.82 -4.1928 66 26 3 0 0 0 0.0085386 1 20885 20885 100.09 47.822 1 20722000 21813 2745 14777 15061 25824 25824 0.030063651776117695 IAGTMEDMTF 10 Unmodified _IAGTMEDMTF_ 0 0 0 ENSG00000117594|ENST00000367027|HSD11B1 ENSG00000117594|ENST00000367027|HSD11B1 ENSG00000117594|ENST00000367027|HSD11B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.24658203125 2 558.241018 1114.46748 0.35772 0.00019969 -2.2261 -0.0012427 -1.8684 -0.001043 558.239470757807 64.607 0.46927 64.607 64.45 64.919 0 66 22 4 0 0 0 0.5905 1 36133 36133 11.64 3.047 1 8901700 21814 3320 14778 15062 25825 25825 -0.08517265879640945 IAGVAQAPIF 10 Unmodified _IAGVAQAPIF_ 0 0 0 REV__ENSG00000159217|ENST00000290341|IGF2BP1 REV__ENSG00000159217|ENST00000290341|IGF2BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7877197265625 2 493.78711 985.559667 -0.0088104 -4.3505E-06 -0.51716 -0.00025537 -0.52597 -0.00025972 493.78674734885936 51.412 0.24299 50.999 50.856 51.099 -0.41351 16 12 2 0 0 0 0.2829 1 27705 27705 28.487 6.7402 1 5627800 + 21815 21470 14779 15063 25826 25826 0.06630948311214979 IAGVAQAPIF 10 Unmodified _IAGVAQAPIF_ 0 0 0 REV__ENSG00000159217|ENST00000290341|IGF2BP1 REV__ENSG00000159217|ENST00000290341|IGF2BP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.78711 985.559667 -0.0088104 -4.3505E-06 -0.51716 -0.00025537 -0.52597 -0.00025972 493.78674734885936 51.412 0.24299 50.999 50.856 51.099 -0.41351 0.028457 -0.00016388 NaN 28.487 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5627800 + 21816 21470 14779 15063 0.06630948311214979 IAGYIIVF 8 Unmodified _IAGYIIVF_ 0 0 0 ENSG00000137252|ENST00000370862|HCRTR2 ENSG00000137252|ENST00000370862|HCRTR2 ENSG00000137252|ENST00000370862|HCRTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2689208984375 2 448.268022 894.521491 0.50563 0.00022666 0.62104 0.00027839 1.1267 0.00050505 448.26846836616335 45.279 0.45596 40.324 40.086 40.541 -4.9549 70 30 3 0 0 0 0.76859 2 27665 27665;27804 11.114 0 1 45004000 21817 4916 14780 15064 25827;25828 25827 0.07001062396579982 IAGYRESAAF 10 Unmodified _IAGYRESAAF_ 0 0 0 ENSG00000197183|ENST00000621426|NOL4L;nc|ENSG00000197183|Q96MY1|NOL4L ENSG00000197183|ENST00000621426|NOL4L ENSG00000197183|ENST00000621426|NOL4L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2965087890625 2 542.774731 1083.53491 0.52568 0.00028532 2.831 0.0015366 3.3567 0.0018219 543.2780634429281 68.369 0.38069 68.394 68.261 68.642 0.025146 33 17 2 0 0 0 0.23227 1 37676 37676 6.7232 0 1 1516300 21818 9925 14781 15065 25829 25829 -0.0035173156215932977 IAHFASVR 8 Unmodified _IAHFASVR_ 0 0 0 ENST00000488380.5_1_3:52515375-52515486:+|nuORF ENST00000488380.5_1_3:52515375-52515486:+|nuORF ENST00000488380.5_1_3:52515375-52515486:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.75634765625 2 450.756144 899.497735 0.49221 0.00022187 1.1742 0.00052929 1.6664 0.00075115 450.7567628703599 38.594 0.48508 34.225 33.996 34.481 -4.3689 54 30 2 0 0 0 0.6895 1 22706 22706 18.135 1.1927 1 35365000 21819 14220 14782 15066 25830 25830 0.043966416827515786 IAHLVKELR 9 Unmodified _IAHLVKELR_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2322692871094 3 360.229231 1077.66586 -0.26204 -9.4393E-05 2.2431 0.00080803 1.9811 0.00071364 360.5630695944073 37.127 0.47825 37.149 36.942 37.42 0.021545 65 21 4 0 0 0 0.57331 1 19743 19743 2.9952 0.26005 1 11706000 21820 8474 14783 15067 25831 25831 0.13013703876549698 IAHQAGLEY 9 Unmodified _IAHQAGLEY_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2576599121094 2 501.256174 1000.49779 -0.50471 -0.00025299 0.35701 0.00017895 -0.1477 -7.4035E-05 501.2567636528843 30.345 0.17953 30.345 30.243 30.422 0 12 8 2 0 0 0 0.10734 1 15760 15760 32.305 11.434 1 2741700 21821 6097 14784 15068 25832 25832 -0.0024340310790194053 IAHQAGLEY 9 Unmodified _IAHQAGLEY_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2525634765625 2 501.256174 1000.49779 1.1466 0.00057474 -0.74571 -0.00037379 0.40088 0.00020094 501.25596383116545 34.235 0.29416 30.249 30.065 30.359 -3.9853 27 16 2 0 0 0 0.031062 2 19683 19683;19743 54.774 11.806 1 12146000 21822 6097 14784 15068 25833;25834 25833 -0.0024340310790194053 IAHRRTTF 8 Unmodified _IAHRRTTF_ 0 0 0 ENSG00000163121|ENST00000451794|NEURL3 ENSG00000163121|ENST00000451794|NEURL3 ENSG00000163121|ENST00000451794|NEURL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2875061035156 2 501.2856 1000.55665 -0.98322 -0.00049287 4.3095 0.0021603 3.3263 0.0016674 501.2875290020869 77.571 0.11703 77.089 77.049 77.166 -0.4826 8 5 2 0 0 0 0.77907 1 42477 42477 10.183 2.8942 1 614940 21823 6955 14785 15069 25835 25835 0.05639117977079877 IAHSDQQVF 9 Unmodified _IAHSDQQVF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7582397460938 2 522.759081 1043.50361 1.3734 0.00071798 -0.69861 -0.0003652 0.67482 0.00035277 522.7586265791431 33.643 0.21558 29.657 29.608 29.824 -3.9853 18 11 2 0 0 0 0.12424 1 19354 19354 30.637 4.3684 1 3888100 21824 5299 14786 15070 25836 25836 -0.01640304596230635 IAHSDQQVF 9 Unmodified _IAHSDQQVF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 522.759081 1043.50361 -0.26943 -0.00014085 0.19528 0.00010209 -0.074149 -3.8762E-05 522.759364380756 30.004 0.20987 30.004 29.847 30.057 0 0.17322 0.00075918 NaN 30.637 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1214800 21825 5299 14786 15070 -0.01640304596230635 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7686157226562 2 496.768583 991.522613 0.45568 0.00022637 -0.06884 -3.4197E-05 0.38685 0.00019217 496.7684979633854 74.584 0.52704 74.584 74.342 74.869 0 68 23 4 0 0 0 0.03327 2 41518 41422;41518 53.576 13.618 1 33309000 21826 15906 14787 15071 25837;25838 25838 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5302124023438 1 992.529889 991.522613 0.19649 0.00019502 -0.060883 -6.0429E-05 0.13561 0.0001346 992.5296992975939 74.616 0.39561 74.616 74.388 74.784 0 54 17 4 0 0 0 0.026094 1 41529 41529 57.471 17.514 1 16864000 21827 15906 14787 15071 25839 25839 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5294799804688 1 992.529889 991.522613 0.62994 0.00062523 -1.49 -0.0014789 -0.86004 -0.00085362 992.5285560446463 75.098 0.30619 74.621 74.453 74.759 -0.47714 28 13 3 0 0 0 0.10925 1 41065 41065 32.117 3.6301 1 4001400 21828 15906 14787 15071 25840 25840 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7687683105469 2 496.768583 991.522613 0.7388 0.00036701 -0.87086 -0.00043261 -0.13206 -6.5604E-05 496.7679002838875 75.108 0.39575 74.631 74.405 74.801 -0.47714 42 17 4 0 0 0 0.12841 1 41067 41067 30.225 8.4782 1 6608400 21829 15906 14787 15071 25841 25841 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7696838378906 2 496.768583 991.522613 0.40162 0.00019951 0.72972 0.0003625 1.1313 0.00056202 496.7690135305616 74.568 0.37807 74.614 74.435 74.813 0.045959 25 16 2 0 0 0 0.12841 1 41105 41105 30.225 4.8255 1 2639700 21830 15906 14787 15071 25842 25842 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7690124511719 2 496.768583 991.522613 0.90859 0.00045136 -0.050366 -2.502E-05 0.85822 0.00042634 496.768524748532 83.018 0.65572 76.842 76.536 77.192 -6.1757 106 35 4 0 0 0 0.052168 4 54522 54400;54522;54668;54805 44.407 12.102 1 219960000 21831 15906 14787 15071 25843;25844;25845;25846 25844 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5287475585938 1 992.529889 991.522613 0.75004 0.00074444 -0.29042 -0.00028825 0.45962 0.00045619 992.5295288023001 83.027 0.57494 76.852 76.571 77.146 -6.1757 84 31 3 0 0 0 0.010877 3 54419 54419;54549;54685 77.984 20.513 1 93076000 21832 15906 14787 15071 25847;25848;25849 25847 0.02651231974800794 IAIDVIDAY 9 Unmodified _IAIDVIDAY_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 992.529889 991.522613 0.59441 0.00058997 -0.34905 -0.00034644 0.24536 0.00024353 992.5298009943139 74.602 0.20573 74.648 74.522 74.728 0.045959 0.019775 9.0298E-05 NaN 57.471 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1365300 21833 15906 14787 15071 0.02651231974800794 IAIESYQSI 9 Unmodified _IAIESYQSI_ 0 0 0 REV__ENSG00000197746|ENST00000394936|PSAP REV__ENSG00000197746|ENST00000394936|PSAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2710571289062 2 512.27149 1022.52843 -0.11514 -5.8982E-05 -1.6539 -0.00084725 -1.769 -0.00090623 512.2706033057481 71.085 0.23895 71.085 70.975 71.214 0 15 9 2 0 0 0 0.1773 1 39593 39593 25.399 0 1 960550 + 21834 23955 14788 15072 25850 25850 0.01806330486465413 IAIFEEQNI 9 Unmodified _IAIFEEQNI_ 0 0 0 REV__ENSG00000153140|ENST00000283122|CETN3 REV__ENSG00000153140|ENST00000283122|CETN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7847290039062 2 538.784764 1075.55498 0.57665 0.00031069 0.36615 0.00019728 0.9428 0.00050797 538.7843959287321 81.765 0.38148 81.269 81.062 81.443 -0.49521 31 14 3 0 0 0 0.46577 1 44793 44793 9.3474 0 1 901160 + 21835 21154 14789 15073 25851 25851 0.02022019377795914 IAILCLMG 8 Unmodified _IAILCLMG_ 0 0 0 REV__ENSG00000206077|ENST00000508859|ZDHHC11B REV__ENSG00000206077|ENST00000508859|ZDHHC11B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2354431152344 2 417.23481 832.455067 NaN NaN NaN NaN NaN NaN NaN 63.877 1 63.392 62.892 63.892 -0.48512 0 0 0 0.9185 1 34843 34843 17.087 0 1 + 21836 23734 14790 15074 25852 25852 0.0321378723866701 IAILHFSLL 9 Unmodified _IAILHFSLL_ 0 0 0 ENST00000591863.1_2_19:33461934-33462189:-|nuORF ENST00000591863.1_2_19:33461934-33462189:-|nuORF ENST00000591863.1_2_19:33461934-33462189:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.746826171875 2 513.820953 1025.62735 0.41829 0.00021492 -3.0138 -0.0015485 -2.5955 -0.0013336 513.8193647047518 67.13 0.20753 67.13 67.064 67.271 0 11 8 2 0 0 0 0.18118 1 37427 37427 18.135 2.2878 1 324230 21837 15710 14791 15075 25853 25853 0.11556398242055366 IAILRQEI 8 Unmodified _IAILRQEI_ 0 0 0 ENST00000511745.1_1_4:49504952-49506338:-|nuORF;nc|ENSG00000229089|Q5CZ79-2|ANKRD20A8P;nc|ENSG00000291287|Q5SQ80|ANKRD20A2P;nc|ENSG00000276203|Q5VUR7|ANKRD20A3P;nc|ENSG00000229089|Q5CZ79|ANKRD20A8P;nc|ENSG00000172014|Q4UJ75|ANKRD20A4P;ENST00000432432.6_1_2:95480778-95522914:-|nuORF;ENSG00000260691|ENST00000562196|ANKRD20A1 ENST00000511745.1_1_4:49504952-49506338:-|nuORF ENST00000511745.1_1_4:49504952-49506338:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.3010559082031 2 478.300384 954.586216 0.62047 0.00029677 -0.065676 -3.1413E-05 0.5548 0.00026536 478.30037826952116 67.516 0.27641 67.033 66.889 67.165 -0.48218 20 11 2 0 0 0 0.38465 1 36885 36885 46.021 0.32134 1 2043300 21838 10829 14792 15076 25854 25854 0.10710637202555517 IAISGLALL 9 Unmodified _IAISGLALL_ 0 0 0 REV__ENSG00000163959|ENST00000296327|SLC51A REV__ENSG00000163959|ENST00000296327|SLC51A MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.5661010742188 1 870.565881 869.558604 0.98568 0.0008581 -0.03252 -2.8311E-05 0.95316 0.00082979 870.5643267155062 101.24 0.10673 95.06 95.018 95.125 -6.1757 9 6 2 0 0 0 0.0086179 1 67890 67890 89.427 0 1 17535000 + 21839 21842 14793 15077 25855 25855 0.11860733942330626 IAKGVLQPMI 10 Unmodified _IAKGVLQPMI_ 0 0 0 ENST00000431872.1_1_9:68357853-68358255:-|nuORF ENST00000431872.1_1_9:68357853-68358255:-|nuORF ENST00000431872.1_1_9:68357853-68358255:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.1832885742188 2 535.325545 1068.63654 0.61963 0.0003317 1.3814 0.00073949 2.001 0.0010712 535.3259019304355 81.975 0.21497 81.48 81.342 81.557 -0.4952 11 7 2 0 0 0 0.22667 1 44874 44874 10.824 0 1 344740 21840 13269 14794 15078 25856 25856 0.10496423536051225 IAKPSHAS 8 Unmodified _IAKPSHAS_ 0 0 0 nc|ENSG00000173166|Q70E73-5|RAPH1;nc|ENSG00000173166|Q70E73-2|RAPH1;nc|ENSG00000173166|Q70E73-8|RAPH1;nc|ENSG00000173166|Q70E73-7|RAPH1;nc|ENSG00000173166|Q70E73-4|RAPH1;nc|ENSG00000173166|Q70E73-3|RAPH1;nc|ENSG00000173166|Q70E73-9|RAPH1;nc|ENSG00000173166|Q70E73-6|RAPH1;ENSG00000173166|ENST00000319170|RAPH1 nc|ENSG00000173166|Q70E73-5|RAPH1 nc|ENSG00000173166|Q70E73-5|RAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.7276306152344 2 405.727052 809.439552 -0.40558 -0.00016456 1.8217 0.00073912 1.4161 0.00057456 405.72753341501686 22.412 0.16204 22.412 22.324 22.486 0 11 7 2 0 0 0 0.80447 1 11416 11416 3.9444 0 1 343110 21841 8294 14795 15079 25857 25857 0.02720960037470377 IAKSHRRSLM 10 Unmodified _IAKSHRRSLM_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2334289550781 3 400.232758 1197.67644 NaN NaN NaN NaN NaN NaN NaN 74.712 1 74.712 74.212 75.212 0 0 0 0 1.0029 1 41570 41570 0.12286 0.039514 1 + 21842 21189 14796 15080 25858 25858 0.08551363259334721 IAKYFIDKI 9 Unmodified _IAKYFIDKI_ 0 0 0 REV__ENST00000492267.1_1_3:82856210-82856543:-|nuORF REV__ENST00000492267.1_1_3:82856210-82856543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8316650390625 2 555.831517 1109.64848 0.83922 0.00046646 -0.58124 -0.00032307 0.25798 0.00014339 555.8310016487789 58.44 0.15791 58.379 58.294 58.452 -0.060719 13 7 2 0 0 0 0.091924 1 31834 31834 34.932 5.8505 1 2939600 + 21843 16931 14797 15081 25859 25859 0.09804363550870221 IAKYKMLQL 9 Unmodified _IAKYKMLQL_ 0 0 0 REV__ENSG00000147475|ENST00000519638|ERLIN2 REV__ENSG00000147475|ENST00000519638|ERLIN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.5574035644531 3 369.891339 1106.65219 1.378 0.00050971 -1.2753 -0.00047173 0.10267 3.7977E-05 369.8911516915189 76.115 0.18081 69.939 69.787 69.968 -6.1757 13 9 2 0 0 0 0.21806 1 49787 49787 2.7352 1.9587 1 7048600 + 21844 20892 14798 15082 25860 25860 0.10312710053108276 IALDRYWSI 9 Unmodified _IALDRYWSI_ 0 0 0 ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A ENSG00000157219|ENST00000287907|HTR5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2373657226562 2 568.808574 1135.60259 NaN NaN NaN NaN NaN NaN NaN 69.824 1 69.345 68.845 69.845 -0.47903 0 0 0 0.82739 1 38171 38171 4.3292 0.73274 1 21845 6507 14799 15083 25861 25861 0.04021718368676375 IALEINKGGS 10 Unmodified _IALEINKGGS_ 0 0 0 REV__nc|ENSG00000154611|Q8TAA3-2|PSMA8 REV__nc|ENSG00000154611|Q8TAA3-2|PSMA8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2380981445312 2 501.284931 1000.55531 0.73456 0.00036822 -0.85914 -0.00043067 -0.12458 -6.2449E-05 501.28427803304055 36.286 0.20175 36.286 36.186 36.388 0 16 9 2 0 0 0 0.22636 1 19274 19274 17.113 1.2657 1 4214300 + 21846 21235 14800 15084 25862 25862 0.05505439097669296 IALHKVTYA 9 Unmodified _IALHKVTYA_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7645568847656 2 508.300384 1014.58622 -0.27071 -0.0001376 0.92236 0.00046884 0.65165 0.00033124 508.3004722362079 54.559 0.31886 54.092 53.882 54.201 -0.46664 28 16 2 0 0 0 0.23158 1 29458 29458 20.454 1.1966 1 4410800 + 21847 18899 14801 15085 25863 25863 0.07950637202554844 IALIYWESFF 10 Unmodified _IALIYWESFF_ 0 0 0 REV__nc|ENSG00000134489|Q9H3N8-2|HRH4 REV__nc|ENSG00000134489|Q9H3N8-2|HRH4 MSMS AL20221201_MKP_PDAC_01 4 644.8312377929688 2 644.834257 1287.65396 NaN NaN NaN NaN NaN NaN NaN 99.64 1 93.464 92.964 93.964 -6.1757 0 0 0 0.5926 1 66418 66418 21.747 2.3847 1 + 21848 19988 14802 15086 25864 25864 0.021640423427015776 IALKEGFHFEV 11 Unmodified _IALKEGFHFEV_ 0 0 0 ENST00000515668.5_1_4:37841869-37848777:+|nuORF ENST00000515668.5_1_4:37841869-37848777:+|nuORF ENST00000515668.5_1_4:37841869-37848777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.345947265625 2 645.348063 1288.68157 -0.40371 -0.00026053 -1.2039 -0.00077692 -1.6076 -0.0010375 645.347260165139 51.988 0.26062 51.988 51.842 52.103 0 19 11 2 0 0 0 0.56638 1 28732 28732 13.042 3.6593 1 5224400 21849 14668 14803 15087 25865 25865 0.04877945602925138 IALLREVII 9 Unmodified _IALLREVII_ 0 0 0 nc|ENSG00000175198|P05165-3|PCCA;nc|ENSG00000175198|P05165-2|PCCA;ENSG00000175198|ENST00000376285|PCCA nc|ENSG00000175198|P05165-3|PCCA nc|ENSG00000175198|P05165-3|PCCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.34765625 2 520.347335 1038.68012 0.10395 5.4089E-05 0.80909 0.00042101 0.91304 0.0004751 520.3477996477604 76.703 0.48933 76.754 76.567 77.057 0.05011 31 20 2 0 0 0 0.087258 1 42326 42326 36.044 0 1 3256000 21850 8493 14804 15088 25866 25866 0.1623235630486306 IALRLTQIF 9 Unmodified _IALRLTQIF_ 0 0 0 REV__ENST00000589389.5_1_16:4854724-4855165:-|nuORF REV__ENST00000589389.5_1_16:4854724-4855165:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.2029113769531 3 358.893848 1073.65972 0.91714 0.00032915 0.32137 0.00011534 1.2385 0.00044449 358.89381774051037 24.166 0.36156 21.338 21.107 21.469 -2.8273 56 19 4 0 0 0 0.203 1 13004 13004 2.9952 0 1 24657000 + 21851 29137 14805 15089 25867 25867 0.12583185645030426 IALVHTDSY 9 Unmodified _IALVHTDSY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.764404296875 2 509.763832 1017.51311 0.3223 0.0001643 0.54415 0.00027739 0.86645 0.00044169 509.7639173117321 39.802 0.29343 39.802 39.639 39.932 0 45 14 4 0 0 0 0.0086629 1 21315 21315 101.72 48.146 1 25703000 21852 10214 14806 15090 25868 25868 0.005054636892737108 IALVHTDSY 9 Unmodified _IALVHTDSY_ 0 0 0 nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7638244628906 2 509.763832 1017.51311 0.47338 0.00024131 0.63557 0.00032399 1.109 0.0005653 509.7645954157727 45.576 0.7294 40.621 40.269 40.999 -4.9549 78 49 2 0 0 0 0.010877 1 27960 27960 77.984 33.577 1 59356000 21853 10214 14806 15090 25869 25869 0.005054636892737108 IALWVVFFG 9 Unmodified _IALWVVFFG_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.304443359375 2 526.302396 1050.59024 0.073382 3.8621E-05 3.2504 0.0017107 3.3238 0.0017493 526.3039330082323 19.96 0.12794 19.968 19.894 20.022 0.0078487 11 6 2 0 0 0 0.53666 1 10173 10173 5.2307 2.3415 1 635040 21854 3783 14807 15091 25870 25870 0.06696726696281985 IALWVVFFGI 10 Unmodified _IALWVVFFGI_ 0 0 0 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.847412109375 2 582.844428 1163.6743 0.33518 0.00019536 3.1001 0.0018069 3.4353 0.0020022 582.846266162833 37.388 0.17954 37.409 37.285 37.464 0.021545 13 7 2 0 0 0 0.57332 1 19860 19860 12.532 0.29089 1 1729700 21855 3783 14808 15092 25871 25871 0.09901257793194418 IALYFGFLEYF 11 Unmodified _IALYFGFLEYF_ 0 0 0 nc|ENSG00000160746|Q9NW15-4|ANO10;nc|ENSG00000160746|Q9NW15-3|ANO10;nc|ENSG00000160746|Q9NW15-5|ANO10;ENSG00000160746|ENST00000292246|ANO10 nc|ENSG00000160746|Q9NW15-4|ANO10 nc|ENSG00000160746|Q9NW15-4|ANO10 MSMS AL20221201_MKP_PDAC_01 4 461.573974609375 3 461.572552 1381.69583 NaN NaN NaN NaN NaN NaN NaN 92.267 1 86.091 85.591 86.591 -6.1757 0 0 0 0.91154 1 61012 61012 3.0723 0.22898 1 21856 6749 14809 15093 25872 25872 0.020245980312438405 IALYYLVY 8 Unmodified _IALYYLVY_ 0 0 0 REV__nc|ENSG00000004948|P30988-4|CALCR REV__nc|ENSG00000004948|P30988-4|CALCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.28515625 2 509.286411 1016.55827 -0.44418 -0.00022621 -3.0249 -0.0015405 -3.4691 -0.0017667 509.28505260471223 76.839 0.37666 76.359 76.163 76.54 -0.47945 30 17 2 0 0 0 0.61999 1 42119 42119 24.21 2.4633 1 3300300 + 21857 29480 14810 15094 25873 25873 0.05065314222474626 IAMATVTAL 9 Oxidation (M) _IAM(Oxidation (M))ATVTAL_ IAM(1)ATVTAL IAM(60)ATVTAL 0 0 1 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4959716796875 1 906.496481 905.489204 -0.62136 -0.00056326 1.2181 0.0011042 0.59669 0.00054089 906.4976320180555 48.748 0.31872 48.748 48.555 48.874 0 34 14 3 0 0 0 0.023164 1 26709 26709 60.39 14.369 1 8119500 21858 6042;2631 14811 15095 25874 25874 454 0.032679069312507636 IAMATVTAL 9 Oxidation (M) _IAM(Oxidation (M))ATVTAL_ IAM(1)ATVTAL IAM(50)ATVTAL 0 0 1 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7521057128906 2 453.751879 905.489204 -0.22473 -0.00010197 0.87887 0.00039879 0.65413 0.00029681 453.75234895398603 48.724 0.31872 48.724 48.555 48.874 0 34 14 3 0 0 0 0.040472 1 26736 26736 49.669 7.5744 1 9260900 21859 6042;2631 14811 15095 25875 25875 454 0.032679069312507636 IAMATVTAL 9 Oxidation (M) _IAM(Oxidation (M))ATVTAL_ IAM(1)ATVTAL IAM(67)ATVTAL 0 0 1 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7525634765625 2 453.751879 905.489204 0.30361 0.00013776 0.080853 3.6687E-05 0.38446 0.00017445 453.7519087702855 56.142 0.31805 50.165 50.002 50.32 -5.9769 24 18 2 0 0 0 0.016494 1 35755 35755 67.035 16.18 1 17040000 21860 6042;2631 14811 15095 25876 25876 454 0.032679069312507636 IAMATVTAL 9 Oxidation (M) _IAM(Oxidation (M))ATVTAL_ 0 0 1 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 453.751879 905.489204 0.27505 0.00012481 0.19912 9.0352E-05 0.47418 0.00021516 453.75189132282816 49.023 0.27915 48.651 48.499 48.778 -0.37172 -0.03643 -0.00038659 NaN 49.669 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3188200 21861 6042;2631 14811 15095 454 0.032679069312507636 IAMATVTAL 9 Unmodified _IAMATVTAL_ 0 0 0 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 890.50146484375 1 890.501566 889.494289 -0.47954 -0.00042703 0.83544 0.00074396 0.35591 0.00031694 890.5020535521159 65.447 0.24612 64.963 64.835 65.081 -0.48428 16 11 2 0 0 0 0.045537 1 35715 35715 46.921 12.818 1 1757000 21862 6042;2631 14811 15096 25877 25877 0.04512210793870963 IAMATVTAL 9 Unmodified _IAMATVTAL_ 0 0 0 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 890.50390625 1 890.501566 889.494289 0.49049 0.00043678 -0.52941 -0.00047144 -0.038921 -3.4659E-05 890.5017635101434 71.711 0.4492 65.536 65.281 65.73 -6.1757 36 23 2 0 0 0 0.0086179 2 46793 46793;46918 89.427 15.03 1 40385000 21863 6042;2631 14811 15096 25878;25879 25878 0.04512210793870963 IAMATVTAL 9 Unmodified _IAMATVTAL_ 0 0 0 ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA ENSG00000109107|ENST00000226253|ALDOC;nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MSMS AL20221201_MKP_PDAC_01 4 445.7549743652344 2 445.754421 889.494289 NaN NaN NaN NaN NaN NaN NaN 71.661 1 65.485 64.985 65.985 -6.1757 0 0 0 0.014367 1 46843 46843 86.121 8.137 1 21864 6042;2631 14811 15096 25880 25880 0.04512210793870963 IAMDLILKM 9 2 Oxidation (M) _IAM(Oxidation (M))DLILKM(Oxidation (M))_ IAM(1)DLILKM(1) IAM(66)DLILKM(66) 0 0 2 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2952270507812 2 540.295596 1078.57664 0.43819 0.00023675 1.7217 0.00093024 2.1599 0.001167 540.2962568425766 46.663 0.31336 46.326 46.169 46.483 -0.33664 27 15 2 0 0 0 0.017075 1 24963 24963 66.457 28.483 1 4910600 21865 6943 14812 15097 25881 25881 1197;1198 0.040493648105439206 IAMDLILKM 9 2 Oxidation (M) _IAM(Oxidation (M))DLILKM(Oxidation (M))_ IAM(1)DLILKM(1) IAM(58)DLILKM(58) 0 0 2 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2965698242188 2 540.295596 1078.57664 0.98883 0.00053426 2.6892 0.001453 3.678 0.0019872 540.296847575473 46.419 0.2863 46.386 46.224 46.51 -0.033417 18 13 2 0 0 0 0.025842 1 24967 24967 57.722 33.701 1 2250800 21866 6943 14812 15097 25882 25882 1197;1198 0.040493648105439206 IAMDLILKM 9 Unmodified _IAMDLILKM_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3017578125 2 524.300681 1046.58681 1.6404 0.00086006 -0.21079 -0.00011052 1.4296 0.00074954 524.3009113417943 98.267 0.14727 92.092 92 92.148 -6.1757 21 9 3 0 0 0 0.017075 1 65143 65143 66.457 30.33 1 60553000 21867 6943 14812 15098 25883 25883 0.06537972535761583 IAMFFVMDRLF 11 Unmodified _IAMFFVMDRLF_ 0 0 0 REV__ATP4A|p.A331D|1|0.21|ENSG00000105675|chr19:35559869-35559869|G/T|missense_variant REV__ATP4A|p.A331D|1|0.21|ENSG00000105675|chr19:35559869-35559869|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.9061584472656 3 463.906772 1388.69849 0.11951 5.5442E-05 -0.2993 -0.00013885 -0.17979 -8.3405E-05 463.9067092411889 33.472 0.80432 33.501 33.253 34.057 0.028931 85 35 4 0 0 0 0.71259 1 17740 17740 3.0723 1.6171 1 9783900 + 21868 16736 14813 15099 25884 25884 0.01968406892888197 IAMKVLGGVAL 11 Unmodified _IAMKVLGGVAL_ 0 0 0 ENSG00000235169|ENST00000642557|SMIM1 ENSG00000235169|ENST00000642557|SMIM1 ENSG00000235169|ENST00000642557|SMIM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.353515625 2 536.33337 1070.65219 1.4841 0.00079597 4.4656 0.0023951 5.9497 0.003191 536.838849475151 109.86 0.035866 103.69 103.67 103.71 -6.1757 12 9 2 0 0 0 0.30604 1 73352 73352 0 0 1 3441800 21869 10638 14814 15100 25885 25885 0.11968710053110954 IAMRDRNAL 9 Unmodified _IAMRDRNAL_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8631286621094 3 353.862442 1058.5655 1.1345 0.00040146 -0.65319 -0.00023114 0.48132 0.00017032 353.86237229263435 26.524 0.37417 23.573 23.3 23.674 -2.9511 39 19 3 0 0 0 0.07916 1 14577 14577 41.956 18.166 1 14245000 21870 3486 14815 15101 25886 25886 0.038557235512371335 IANALCIL 8 Unmodified _IANALCIL_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 830.4801635742188 1 830.480437 829.47316 0.41389 0.00034373 -2.284 -0.0018968 -1.8701 -0.0015531 830.4784052887345 79.59 0.21801 79.645 79.577 79.795 0.05497 13 8 2 0 0 0 0.72953 1 43992 43992 14.582 0 1 736750 21871 1477 14816 15102 25887 25887 0.05160245485012638 IANAVVKEL 9 Unmodified _IANAVVKEL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7925415039062 2 478.792392 955.570232 -0.04264 -2.0416E-05 -0.81716 -0.00039125 -0.8598 -0.00041167 478.7926191205126 76.805 0.19776 76.326 76.216 76.413 -0.47945 12 8 2 0 0 0 0.49272 1 42059 42059 7.9102 0.62092 1 639700 21872 3189 14817 15103 25888 25888 0.09066930965661868 IANGKRIS 8 Unmodified _IANGKRIS_ 0 0 0 REV__ENSG00000132024|ENST00000318003|CC2D1A REV__ENSG00000132024|ENST00000318003|CC2D1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.7606506347656 2 429.761426 857.5083 NaN NaN NaN NaN NaN NaN NaN 45.524 1 45.2 44.7 45.7 -0.32425 0 0 0 0.62748 1 24325 24325 32.305 2.0807 1 + 21873 19827 14818 15104 25889 25889 0.07384624337169043 IANGKRIS 8 Unmodified _IANGKRIS_ 0 0 0 REV__ENSG00000132024|ENST00000318003|CC2D1A REV__ENSG00000132024|ENST00000318003|CC2D1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.7616271972656 2 429.761426 857.5083 1.0694 0.00045957 -0.7355 -0.00031609 0.33387 0.00014348 429.7610915947061 42.442 0.43386 37.758 37.592 38.026 -4.6846 78 28 4 0 0 0 0.50673 2 25571 25571;25700 34.102 3.8776 1 107350000 + 21874 19827 14818 15104 25890;25891 25890 0.07384624337169043 IANHCFTCA 9 Unmodified _IANHCFTCA_ 0 0 0 ENSG00000100024|ENST00000326010|UPB1 ENSG00000100024|ENST00000326010|UPB1 ENSG00000100024|ENST00000326010|UPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2094421386719 2 490.209855 978.405157 1.1543 0.00056584 -1.4011 -0.00068681 -0.24678 -0.00012097 490.2091979446994 88.368 0.43079 82.192 81.993 82.424 -6.1757 50 23 3 0 0 0 0.41742 1 58217 58217 11.64 0.81637 1 19036000 21875 1739 14819 15105 25892 25892 -0.08490947437292107 IANQVQLFY 9 Unmodified _IANQVQLFY_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2955932617188 2 548.295299 1094.57605 0.21857 0.00011984 0.97151 0.00053267 1.1901 0.00065252 548.2957594609736 76.875 0.25493 70.699 70.504 70.759 -6.1757 18 12 2 0 0 0 0.03327 1 50234 50234 53.576 13.618 1 12640000 21876 3711 14820 15106 25893 25893 0.03254029477329823 IANRFHLL 8 Unmodified _IANRFHLL_ 0 0 0 REV__ENST00000432916.5_1_22:45122508-45132738:+|nuORF REV__ENST00000432916.5_1_22:45122508-45132738:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2922973632812 2 492.292894 982.571235 NaN NaN NaN NaN NaN NaN NaN 87.141 1 87.141 86.641 87.641 0 0 0 0 0.97444 1 48259 48259 2.8892 0 1 + 21877 23588 14821 15107 25894 25894 0.07925190125229165 IANVAHTF 8 Unmodified _IANVAHTF_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7345581054688 2 436.734877 871.455202 NaN NaN NaN NaN NaN NaN NaN 34.797 1 34.797 34.297 35.297 0 0 0 0 0.4236 1 18359 18359 50.855 6.448 1 21878 7997 14822 15108 25895 25895 0.01433246554518064 IANVAHTF 8 Unmodified _IANVAHTF_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7345275878906 2 436.734877 871.455202 -0.33498 -0.0001463 -0.071412 -3.1188E-05 -0.40639 -0.00017749 436.73497841533384 34.888 0.22892 34.697 34.564 34.793 -0.19132 15 9 2 0 0 0 0.10909 1 18249 18249 97.075 36.685 1 2342000 21879 7997 14822 15108 25896 25896 0.01433246554518064 IANVAHTF 8 Unmodified _IANVAHTF_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4;ENST00000418595.1_1_6:112938557-112938875:-|nuORF;ENST00000473864.1_1_3:156528118-156528448:-|nuORF nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.73583984375 2 436.734877 871.455202 0.96053 0.0004195 0.35768 0.00015621 1.3182 0.00057571 436.7350622201891 39.465 0.33579 35.014 34.858 35.194 -4.4509 35 19 2 0 0 0 0.079151 2 23507 23376;23507 109.63 49.24 1 19409000 21880 7997 14822 15108 25897;25898 25898 0.01433246554518064 IANVDTLDPIK 11 Unmodified _IANVDTLDPIK_ 0 0 0 REV__nc|ENSG00000166206|P28472-4|GABRB3 REV__nc|ENSG00000166206|P28472-4|GABRB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5607604980469 3 400.227444 1197.6605 -0.56064 -0.00022438 -0.98632 -0.00039475 -1.547 -0.00061914 400.2273500522971 18.685 0.11692 18.685 18.634 18.75 0 12 10 2 0 0 0 0.73349 1 9322 9322 1.1098 0 1 346290 + 21881 22094 14823 15109 25899 25899 0.06957935503419321 IAPFGRKNL 9 Unmodified _IAPFGRKNL_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584533691406 2 508.306001 1014.59745 0.35205 0.00017895 -0.32265 -0.000164 0.029404 1.4946E-05 508.30584174137886 64.202 0.23048 64.202 64.071 64.301 0 15 9 2 0 0 0 0.20727 1 35807 35807 7.9102 0.3012 1 1106400 + 21882 23742 14824 15110 25900 25900 0.09073459296701003 IAPFIKFL 8 Unmodified _IAPFIKFL_ 0 0 0 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7992248535156 2 474.799489 947.584425 0.81278 0.00038591 0.11037 5.2403E-05 0.92314 0.00043831 474.7994161400349 100.68 0.17771 94.501 94.445 94.623 -6.1757 28 12 3 0 0 0 0.38711 1 67373 67373 45.75 5.3014 1 112110000 + 21883 17623 14825 15111 25901 25901 0.10853628184611352 IAPFIKFL 8 Unmodified _IAPFIKFL_ 0 0 0 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7925109863281 2 474.799489 947.584425 1.4572 0.0006919 -0.080246 -3.8101E-05 1.377 0.0006538 474.79923195527306 101 0.1243 94.823 94.764 94.889 -6.1757 16 6 3 0 0 0 0.48233 1 67647 67647 36.466 0.42194 1 171110000 + 21884 17623 14825 15111 25902 25902 0.10853628184611352 IAPGFARL 8 Unmodified _IAPGFARL_ 0 0 0 REV__ENSG00000205903|ENST00000382252|ZNF316 REV__ENSG00000205903|ENST00000382252|ZNF316 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7559204101562 2 422.755613 843.496673 0.4136 0.00017485 -0.081492 -3.4451E-05 0.33211 0.0001404 422.7555737937971 55.394 0.27476 54.916 54.774 55.048 -0.47798 23 12 2 0 0 0 0.5953 1 30020 30020 26.341 6.9023 1 3289500 + 21885 24245 14826 15112 25903 25903 0.06866427313832446 IAPGFARL 8 Unmodified _IAPGFARL_ 0 0 0 REV__ENSG00000205903|ENST00000382252|ZNF316 REV__ENSG00000205903|ENST00000382252|ZNF316 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.22802734375 2 422.755613 843.496673 0.4136 0.00017485 -0.081492 -3.4451E-05 0.33211 0.0001404 422.7555737937971 55.394 0.27476 54.916 54.774 55.048 -0.47798 23 12 2 0 0 0 8.7369 1 30085 30085 9.3474 0 1 3289500 + 21886 24245 14826 15112 25904 25904 0.06866427313832446 IAPGLPPQNF 10 Unmodified _IAPGLPPQNF_ 0 0 0 nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000068305|Q02078-3|MEF2A nc|ENSG00000068305|Q02078-3|MEF2A MSMS AL20221201_MKP_PDAC_01 4 527.2906494140625 2 527.290017 1052.56548 NaN NaN NaN NaN NaN NaN NaN 102.61 1 96.429 95.929 96.929 -6.1757 0 0 0 0.5638 1 68849 68849 23.148 3.7094 1 21887 16043 14827 15113 25905 25905 0.04130046822888289 IAPHVMFKLL 10 Unmodified _IAPHVMFKLL_ 0 0 0 REV__nc|ENSG00000125755|Q92797-2|SYMPK REV__nc|ENSG00000125755|Q92797-2|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2361450195312 3 390.235217 1167.68382 0.189 7.3753E-05 2.7342 0.001067 2.9232 0.0011407 390.2360341771221 39.424 0.31185 39.435 39.259 39.571 0.011452 23 14 2 0 0 0 0.55245 1 20996 20996 13.615 0.74226 1 2848500 + 21888 19513 14828 15114 25906 25906 0.10668702807060981 IAPIDQSPP 9 Unmodified _IAPIDQSPP_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C REV__ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.5017700195312 1 937.498923 936.491647 0.13294 0.00012463 0.50031 0.00046904 0.63325 0.00059367 937.4992815155098 64.01 0.49846 64.01 63.756 64.255 0 34 20 2 0 0 0 0.14602 1 35627 35627 28.487 6.7402 1 778560 + 21889 17296 14829 15115 25907 25907 0.0208607866057946 IAPIDQSPP 9 Unmodified _IAPIDQSPP_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C REV__ENSG00000056277|ENST00000370978|ZNF280C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 937.498923 936.491647 0.13294 0.00012463 0.50031 0.00046904 0.63325 0.00059367 937.4992815155098 64.01 0.49846 64.01 63.756 64.255 0 0 0 NaN 28.487 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 778560 + 21890 17296 14829 15115 0.0208607866057946 IAPPVTLLS 9 Unmodified _IAPPVTLLS_ 0 0 0 REV__ENST00000531006.1_1_8:144698125-144698617:-|nuORF REV__ENST00000531006.1_1_8:144698125-144698617:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7842407226562 2 455.784036 909.553519 0.94932 0.00043268 -1.3281 -0.00060531 -0.37875 -0.00017263 455.7839221528445 83.061 0.79529 76.886 76.608 77.403 -6.1757 73 42 2 0 0 0 0.023164 2 54488 54488;54617 60.39 9.5345 1 34202000 + 21891 28443 14830 15116 25908;25909 25908 0.09512430079723799 IAPQEAPVY 9 Unmodified _IAPQEAPVY_ 0 0 0 REV__ENST00000409179.2_1_2:128100707-128145117:-|nuORF REV__ENST00000409179.2_1_2:128100707-128145117:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.2596130371094 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 59.094 1 53.02 52.52 53.52 -6.0745 0 0 0 0.18753 1 37908 37908 32.305 2.0807 1 + 21892 26681 14831 15117 25910 25910 0.01350365177609092 IAPRPYRL 8 Unmodified _IAPRPYRL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON nc|ENSG00000159140|P18583-7|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3000793457031 2 493.300719 984.586885 0.57079 0.00028157 -1.1132 -0.00054913 -0.54238 -0.00026755 493.30006609525714 95.497 0.24982 95.129 94.968 95.218 -0.36815 19 11 2 0 0 0 0.80624 1 52115 52115 2.8892 0 1 570220 21893 6628 14832 15118 25911 25911 0.09397476642266156 IAQAESLRY 9 Unmodified _IAQAESLRY_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7820434570312 2 525.782556 1049.55056 -0.061481 -3.2326E-05 -1.9473 -0.0010239 -2.0088 -0.0010562 525.7817293369641 33.458 0.12477 33.458 33.345 33.47 0 10 6 2 0 0 0 0.0090524 1 17528 17528 85.642 37.296 1 14938000 21894 5998;13297 14833 15119 25912 25912 0.027765549549030766 IAQAESLRY 9 Unmodified _IAQAESLRY_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000487417.1_1_12:62415587-62415818:-|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.782958984375 2 525.782556 1049.55056 1.058 0.00055629 0.79814 0.00041965 1.8562 0.00097594 525.7824964635847 38.073 0.32067 33.704 33.516 33.836 -4.3689 30 18 2 0 0 0 0.0090524 1 22364 22364 85.642 34.012 1 19540000 21895 5998;13297 14833 15119 25913 25913 0.027765549549030766 IAQEIYADL 9 Unmodified _IAQEIYADL_ 0 0 0 ENSG00000087152|ENST00000587097|ATXN7L3;nc|ENSG00000087152|Q14CW9-2|ATXN7L3 ENSG00000087152|ENST00000587097|ATXN7L3 ENSG00000087152|ENST00000587097|ATXN7L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.26318359375 2 518.27149 1034.52843 0.65456 0.00033924 -0.23442 -0.00012149 0.42014 0.00021775 518.2715187638767 68.063 0.32526 61.887 61.721 62.046 -6.1757 28 18 2 0 0 0 0.23158 1 44272 44272 20.454 1.0146 1 20458000 21896 1457 14834 15120 25914 25914 0.012543304864720994 IAQLFLLY 8 Unmodified _IAQLFLLY_ 0 0 0 REV__ENSG00000156162|ENST00000414645|DPY19L4 REV__ENSG00000156162|ENST00000414645|DPY19L4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.28271484375 2 490.794404 979.574254 0.45139 0.00022154 -2.9812 -0.0014632 -2.5298 -0.0012416 490.79269361966254 63.409 0.17492 62.923 62.841 63.016 -0.48617 10 7 2 0 0 0 8.7369 1 34572 34572 15.768 0 1 856490 + 21897 21316 14835 15121 25915 25915 0.08365020459382322 IAQRYLLQY 9 Unmodified _IAQRYLLQY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3298950195312 2 584.329673 1166.64479 0.26171 0.00015292 -0.06579 -3.8443E-05 0.19592 0.00011448 584.3295334166116 51.526 0.29599 51.472 51.361 51.657 -0.053875 32 14 3 0 0 0 0.0086209 1 27919 27919 100.37 58.532 1 9688200 21898 654 14836 15122 25916 25916 0.06813693777053231 IAQRYLLQY 9 Unmodified _IAQRYLLQY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.33056640625 2 584.329673 1166.64479 0.87796 0.00051302 0.2188 0.00012785 1.0968 0.00064087 584.8310703320354 57.184 0.2545 51.157 51.022 51.277 -6.0275 21 14 2 0 0 0 0.008513 1 36569 36569 125.62 75.692 1 20907000 21899 654 14836 15122 25917 25917 0.06813693777053231 IAQVITDL 8 Unmodified _IAQVITDL_ 0 0 0 REV__ENST00000575320.1_1_16:4308058-4310315:-|nuORF REV__ENST00000575320.1_1_16:4308058-4310315:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7587280273438 2 436.758018 871.501483 0.87924 0.00038401 -0.082761 -3.6146E-05 0.79648 0.00034787 436.75803040109184 67.106 0.43279 60.93 60.73 61.163 -6.1757 32 23 2 0 0 0 0.3408 1 43691 43691 50.855 3.9342 1 20920000 + 21900 17858 14837 15123 25918 25918 0.060592666659431416 IARDEGGKAFF 11 Unmodified _IARDEGGKAFF_ 0 0 0 ENSG00000005022|ENST00000317881|SLC25A5;ENST00000463551.1_1_X:118604271-118605018:+|nuORF ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2117614746094 3 404.212017 1209.61422 NaN NaN NaN NaN NaN NaN NaN 35.571 1 35.349 34.849 35.849 -0.2224 0 0 0 0.66577 1 18632 18632 18.34 5.4671 1 21901 295 14838 15124 25919 25919 0.017799153919895616 IARHEEEFDLF 11 Unmodified _IARHEEEFDLF_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2301330566406 3 469.229736 1404.66738 0.62016 0.000291 -0.25443 -0.00011939 0.36573 0.00017161 469.2293872262679 56.971 0.27647 56.971 56.835 57.111 0 29 11 3 0 0 0 0.64473 1 31711 31711 9.0676 6.9815 1 1798300 21902 4023 14839 15125 25920 25920 -0.01876751616009642 IARKIKKFF 9 Unmodified _IARKIKKFF_ 0 0 0 ENSG00000111834|ENST00000229554|RSPH4A;nc|ENSG00000111834|Q5TD94-3|RSPH4A ENSG00000111834|ENST00000229554|RSPH4A ENSG00000111834|ENST00000229554|RSPH4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8780517578125 2 575.876594 1149.73863 NaN NaN NaN NaN NaN NaN NaN 72.308 1 71.832 71.332 72.332 -0.47609 0 0 0 0.85737 1 39572 39572 0.6015 0 1 21903 2833 14840 15126 25921 25921 0.16975457669991556 IARLPSSTL 9 Unmodified _IARLPSSTL_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2912292480469 2 479.290017 956.565481 -0.19427 -9.3113E-05 1.3525 0.00064824 1.1582 0.00055513 479.2909269800066 41.792 0.20158 41.791 41.68 41.882 -0.0017929 16 9 2 0 0 0 0.010301 1 22355 22355 79.596 17.024 1 11191000 21904 9459 14841 15127 25922 25922 0.0854604682289164 IARLPSSTL 9 Unmodified _IARLPSSTL_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.290771484375 2 479.290017 956.565481 0.70859 0.00033962 -0.54779 -0.00026255 0.1608 7.7071E-05 479.2897115529887 46.983 0.33808 41.902 41.725 42.063 -5.0805 53 38 2 0 0 0 0.010301 2 29150 29018;29150 79.596 17.024 1 31093000 21905 9459 14841 15127 25923;25924 25924 0.0854604682289164 IARLPSSTL 9 Unmodified _IARLPSSTL_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.290017 956.565481 -0.033352 -1.5985E-05 3.2663 0.0015655 3.233 0.0015495 479.2917232255898 42.12 0.13733 41.813 41.701 41.838 -0.30682 -0.022459 0.0026452 NaN 79.596 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4166500 21906 9459 14841 15127 0.0854604682289164 IARNLTQQL 9 Unmodified _IARNLTQQL_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8125 2 528.811648 1055.60874 1.194 0.0006314 1.1102 0.00058707 2.3042 0.0012185 528.8124145900011 40.842 0.43324 36.313 36.113 36.546 -4.5294 67 26 3 0 0 0 0.0094097 2 24497 24366;24497 82.529 3.8866 1 46523000 21907 5887 14842 15128 25925;25926 25926 0.08316236600194316 IARTFSTHSF 10 Unmodified _IARTFSTHSF_ 0 0 0 REV__ENST00000425226.1_1_2:203705056-203705395:-|nuORF REV__ENST00000425226.1_1_2:203705056-203705395:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8005981445312 2 583.80128 1165.58801 NaN NaN NaN NaN NaN NaN NaN 36.194 1 36.194 35.694 36.694 0 0 0 0 0.91523 1 19183 19183 7.2892 0.56607 1 + 21908 26889 14843 15129 25927 25927 0.011836462205110365 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2689514160156 2 465.26875 928.522947 0.53324 0.0002481 -0.28882 -0.00013438 0.24442 0.00011372 465.2684634720755 61.674 0.4085 61.674 61.433 61.842 0 53 18 4 0 0 0 0.013472 2 34298 34298;34398 70.716 34.671 1 16268000 21909 3160 14844 15130 25928;25929 25928 0.055826516946467564 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.5301513671875 1 929.530224 928.522947 0.35085 0.00032613 -0.40914 -0.0003803 -0.058286 -5.4178E-05 929.5298228699025 61.634 0.34527 61.634 61.476 61.821 0 43 15 4 0 0 0 0.0036082 2 34397 34302;34397 123.45 38.389 1 9912400 21910 3160 14844 15130 25930;25931 25931 0.055826516946467564 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 929.5296020507812 1 929.530224 928.522947 0.5711 0.00053085 0.20446 0.00019005 0.77556 0.0007209 929.5298680768528 62.129 0.25748 61.641 61.489 61.747 -0.48764 20 11 2 0 0 0 0.0090948 1 33800 33800 85.272 20.037 1 3139600 21911 3160 14844 15130 25932 25932 0.055826516946467564 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2690124511719 2 465.26875 928.522947 0.53438 0.00024863 0.057589 2.6795E-05 0.59197 0.00027542 465.2687796019773 62.116 0.48706 61.629 61.469 61.956 -0.48764 38 22 3 0 0 0 0.026094 1 33818 33818 57.471 17.514 1 4621500 21912 3160 14844 15130 25933 25933 0.055826516946467564 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2693481445312 2 465.26875 928.522947 0.91204 0.00042434 -0.57395 -0.00026704 0.33809 0.0001573 465.2684172897713 69.215 0.55663 63.04 62.725 63.281 -6.1757 62 30 3 0 0 0 0.0083938 2 45094 45094;45222 108 36.863 1 64722000 21913 3160 14844 15130 25934;25935 25934 0.055826516946467564 IASAIVNEL 9 Unmodified _IASAIVNEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.5289306640625 1 929.530224 928.522947 0.9656 0.00089756 -0.77671 -0.00072197 0.18889 0.00017558 929.5295552348038 69.191 0.35359 63.016 62.84 63.193 -6.1757 30 19 2 0 0 0 0.0071894 2 45112 45112;45247 111.29 36.358 1 25841000 21914 3160 14844 15130 25936;25937 25936 0.055826516946467564 IASDAFATF 9 Unmodified _IASDAFATF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7317810058594 2 471.732 941.449448 0.24436 0.00011527 -0.31092 -0.00014667 -0.066565 -3.1401E-05 471.73198794135294 65.098 0.22584 65.098 64.994 65.219 0 11 9 2 0 0 0 0.48152 1 36359 36359 8.5933 2.2392 1 681560 21915 2052 14845 15131 25938 25938 -0.023618967478114428 IASDAFATF 9 Unmodified _IASDAFATF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 471.732 941.449448 0.14871 7.0149E-05 -0.13385 -6.3142E-05 0.014854 7.007E-06 471.73238085157504 65.621 0.20529 65.137 65.061 65.267 -0.48428 0.019553 0.0001183 NaN 8.5933 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 689770 21916 2052 14845 15131 -0.023618967478114428 IASMSIFCQH 10 Unmodified _IASMSIFCQH_ 0 0 0 REV__nc|ENSG00000143951|O95876-2|WDPCP REV__nc|ENSG00000143951|O95876-2|WDPCP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5370178222656 3 379.512422 1135.51544 1.533 0.0005818 -0.249 -9.4499E-05 1.284 0.0004873 379.51240912626173 36.076 0.43675 31.883 31.664 32.1 -4.1928 82 26 4 0 0 0 0.23634 1 21043 21043 3.5871 0 1 34415000 + 21917 20683 14846 15132 25939 25939 -0.046901471689125174 IASPDARF 8 Unmodified _IASPDARF_ 0 0 0 REV__ENSG00000186838|ENST00000335426|SELENOV REV__ENSG00000186838|ENST00000335426|SELENOV MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7329711914062 2 438.732335 875.450116 1.1872 0.00052085 -0.32844 -0.0001441 0.85873 0.00037675 438.73227083136095 53.564 0.59708 47.76 47.498 48.095 -5.8042 82 38 3 0 0 0 0.57045 1 33776 33776 28.487 0 1 57802000 + 21918 23600 14847 15133 25940 25940 0.007409426919025464 IASSYVLIL 9 Unmodified _IASSYVLIL_ 0 0 0 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.7968139648438 2 489.797143 977.579734 1.9388 0.00094964 -0.55751 -0.00027306 1.3813 0.00067657 489.79688985885315 92.789 0.46083 92.819 92.599 93.059 0.030197 55 18 4 0 0 0 0.0094915 2 51547 51547;51652 81.864 0 1 24249000 21919 8937 14848 15134 25941;25942 25941 0.09004699251204329 IASSYVLIL 9 Unmodified _IASSYVLIL_ 0 0 0 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.58935546875 1 978.58701 977.579734 1.1753 0.0011501 -0.18956 -0.0001855 0.98575 0.00096464 978.5869667048995 100.08 0.25278 93.906 93.792 94.044 -6.1757 45 15 4 0 0 0 0.0086179 1 66791 66791 89.427 0 1 273000000 21920 8937 14848 15134 25943 25943 0.09004699251204329 IASSYVLIL 9 Unmodified _IASSYVLIL_ 0 0 0 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7980041503906 2 489.797143 977.579734 1.3101 0.00064166 0.29881 0.00014636 1.6089 0.00078802 489.79720000051293 100.08 0.2048 93.907 93.792 93.996 -6.1757 45 12 5 0 0 0 0.0094915 1 66798 66798 81.864 0 1 374660000 21921 8937 14848 15134 25944 25944 0.09004699251204329 IASYNQLSSF 10 Unmodified _IASYNQLSSF_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2802124023438 2 565.279846 1128.54514 0.48242 0.0002727 0.38588 0.00021813 0.8683 0.00049083 565.2803184695213 58.079 0.37286 57.589 57.369 57.742 -0.48974 46 17 4 0 0 0 0.56348 1 31636 31636 13.042 0 1 11305000 21922 9083 14849 15135 25945 25945 -0.013991686275630855 IATEAIENF 9 Unmodified _IATEAIENF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2556457519531 2 504.25584 1006.49713 0.074398 3.7516E-05 -2.2118 -0.0011153 -2.1375 -0.0010778 504.25531041635236 56.201 0.3328 56.201 56.028 56.361 0 20 15 2 0 0 0 0.078417 1 31251 31251 38.151 15.003 1 11288000 21923 1413 14850 15136 25946 25946 -0.005862425476152566 IATEAIENF 9 Unmodified _IATEAIENF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.256591796875 2 504.25584 1006.49713 1.4585 0.00073547 1.1773 0.00059366 2.6358 0.0013291 504.2561772168448 64.265 0.42154 58.09 57.841 58.262 -6.1757 35 21 2 0 0 0 0.03327 1 41622 41622 53.576 28.176 1 13360000 21924 1413 14850 15136 25947 25947 -0.005862425476152566 IATEITAKF 9 Unmodified _IATEITAKF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2837829589844 2 497.2844 992.554247 0.27186 0.00013519 -2.8677 -0.0014261 -2.5959 -0.0012909 497.2830522979989 48.88 0.18877 48.509 48.446 48.635 -0.37172 14 9 2 0 0 0 0.01958 1 26242 26242 63.961 31.175 1 5044200 21925 35;12948 14851 15137 25948 25948 0.05767224728765541 IATEITAKF 9 Unmodified _IATEITAKF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2753295898438 2 497.2844 992.554247 0.96883 0.00048179 -0.30243 -0.00015039 0.6664 0.00033139 497.28415850424943 54.46 0.23201 48.595 48.531 48.763 -5.8653 22 14 2 0 0 0 0.0094097 2 34556 34544;34556 82.529 26.352 1 24261000 21926 35;12948 14851 15137 25949;25950 25950 0.05767224728765541 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2697143554688 2 483.26875 964.522947 0.75549 0.0003651 -0.8221 -0.00039729 -0.06661 -3.2191E-05 483.26833857830036 51.061 0.33197 51.061 50.897 51.229 0 39 16 3 0 0 0 0.026094 2 28133 28098;28133 57.471 13.613 1 17553000 21927 2482 14852 15138 25951;25952 25952 0.03926651694666816 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2684631347656 2 483.26875 964.522947 0.04575 2.2109E-05 0.05488 2.6522E-05 0.10063 4.8631E-05 483.26875767963855 51.634 0.3361 51.2 50.988 51.325 -0.43367 44 17 4 0 0 0 0.019303 2 27791 27791;27900 64.236 15.89 1 36021000 21928 2482 14852 15138 25953;25954 25953 0.03926651694666816 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.5307006835938 1 965.530224 964.522947 -0.14507 -0.00014007 -0.38916 -0.00037575 -0.53423 -0.00051581 965.5294745806449 51.627 0.24348 51.194 51.061 51.305 -0.43367 28 12 3 0 0 0 0.022193 2 27796 27796;27909 61.357 4.6767 1 9638200 21929 2482 14852 15138 25955;25956 25955 0.03926651694666816 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2690124511719 2 483.26875 964.522947 0.032023 1.5476E-05 2.4168 0.0011679 2.4488 0.0011834 483.2702543971414 51.204 0.31839 51.15 51.007 51.325 -0.053871 20 15 2 0 0 0 0.042911 1 27715 27715 48.346 19.264 1 1778700 21930 2482 14852 15138 25957 25957 0.03926651694666816 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2703552246094 2 483.26875 964.522947 1.066 0.00051518 -0.76743 -0.00037087 0.29861 0.00014431 483.268203255953 59.343 0.94191 53.228 52.662 53.604 -6.1147 185 51 5 0 0 0 0.019303 2 37746 37746;37888 64.236 20.378 1 2988599999.9999995 21931 2482 14852 15138 25958;25959 25958 0.03926651694666816 IATGVQTLY 9 Unmodified _IATGVQTLY_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 965.530224 964.522947 0.64378 0.00062159 -1.8477 -0.001784 -1.2039 -0.0011624 965.5282907098934 51.041 0.24862 51.041 50.938 51.187 0 -0.076168 -0.00089927 NaN 61.357 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6501500 21932 2482 14852 15138 0.03926651694666816 IATRQLIL 8 Unmodified _IATRQLIL_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MSMS AL20221201_MKP_PDAC_01 4 464.3023986816406 2 464.302927 926.591301 NaN NaN NaN NaN NaN NaN NaN 61.92 1 55.744 55.244 56.244 -6.1757 0 0 0 0.62748 1 39915 39915 32.305 1.6689 1 21933 9978 14853 15139 25960 25960 0.125069410651804 IATSHNIVY 9 Unmodified _IATSHNIVY_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2717895507812 2 509.271824 1016.5291 -0.51083 -0.00026015 1.53 0.00077918 1.0191 0.00051902 509.2725282352062 33.587 0.25589 33.428 33.297 33.553 -0.15918 23 10 3 0 0 0 0.015445 1 17512 17512 68.081 32.037 1 2803900 21934 4971 14854 15140 25961 25961 0.02149169926178729 IATSHNIVY 9 Unmodified _IATSHNIVY_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2725219726562 2 509.271824 1016.5291 0.93623 0.00047679 -0.40881 -0.00020819 0.52742 0.0002686 509.27148399059706 37.92 0.38323 33.551 33.334 33.718 -4.3689 59 22 3 0 0 0 0.014417 1 22202 22202 69.105 33.061 1 33008000 21935 4971 14854 15140 25962 25962 0.02149169926178729 IAVAITEAL 9 Unmodified _IAVAITEAL_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7737426757812 2 450.773668 899.532783 0.85473 0.00038529 -0.59701 -0.00026912 0.25771 0.00011617 450.77345228838226 80.478 0.32674 74.302 74.152 74.479 -6.1757 18 17 2 0 0 0 0.0089973 1 52774 52774 86.121 28.65 1 8206200 21936 4362 14855 15141 25963 25963 0.07899839700041866 IAVALIQAY 9 Unmodified _IAVALIQAY_ 0 0 0 ENST00000514057.1_1_1:569411-569753:+|nuORF;ENSG00000198899|ENST00000361899|MT-ATP6 ENST00000514057.1_1_1:569411-569753:+|nuORF ENST00000514057.1_1_1:569411-569753:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2900695800781 2 481.289485 960.564418 0.83882 0.00040371 -0.34356 -0.00016535 0.49526 0.00023836 481.2893180009191 74.857 0.29382 74.381 74.182 74.475 -0.47588 20 11 2 0 0 0 0.1492 1 40931 40931 28.173 10.038 1 1356400 21937 10190 14856 15142 25964 25964 0.08255832453983203 IAVALIQAY 9 Unmodified _IAVALIQAY_ 0 0 0 ENST00000514057.1_1_1:569411-569753:+|nuORF;ENSG00000198899|ENST00000361899|MT-ATP6 ENST00000514057.1_1_1:569411-569753:+|nuORF ENST00000514057.1_1_1:569411-569753:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2896118164062 2 481.289485 960.564418 0.351 0.00016893 0.39719 0.00019116 0.74819 0.00036009 481.289576234476 74.311 0.27472 74.355 74.182 74.456 0.043983 18 11 2 0 0 0 0.085487 1 40940 40940 36.466 8.2929 1 3519900 21938 10190 14856 15142 25965 25965 0.08255832453983203 IAVERVISV 9 Unmodified _IAVERVISV_ 0 0 0 ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3055725097656 2 493.305667 984.596781 0.33136 0.00016346 -0.09663 -4.7668E-05 0.23473 0.00011579 493.30551515761977 66.359 0.35695 65.876 65.711 66.068 -0.48323 53 18 4 0 0 0 0.021948 2 36166 36166;36273 61.602 4.3528 1 19732000 21939 10752 14857 15143 25966;25967 25966 0.10386619857013102 IAVERVISV 9 Unmodified _IAVERVISV_ 0 0 0 ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.3059997558594 2 493.305667 984.596781 1.122 0.00055351 -0.60458 -0.00029824 0.51745 0.00025526 493.30531374762285 65.893 0.32462 65.902 65.708 66.033 0.0095596 34 15 3 0 0 0 0.017075 1 36101 36101 66.457 0.98299 1 9908700 21940 10752 14857 15143 25968 25968 0.10386619857013102 IAVERVISV 9 Unmodified _IAVERVISV_ 0 0 0 ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3056335449219 2 493.305667 984.596781 0.68883 0.00033981 -0.52947 -0.00026119 0.15936 7.8615E-05 493.3053062129463 82.764 1.6987 76.588 75.83 77.528 -6.1757 158 93 2 0 0 0 0.013609 3 54129 54003;54129;54285 70.332 13.083 1 18919000 21941 10752 14857 15143 25969;25970;25971 25970 0.10386619857013102 IAVFMEHSF 9 Oxidation (M) _IAVFM(Oxidation (M))EHSF_ IAVFM(1)EHSF IAVFM(120)EHSF 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7605590820312 2 548.760235 1095.50592 0.57894 0.0003177 -0.95904 -0.00052628 -0.3801 -0.00020858 548.7599802308654 53.28 0.30122 53.28 53.099 53.401 0 38 12 4 0 0 0 0.0036753 1 29486 29486 123.1 88.994 1 10159000 21942 6889 14858 15144 25972 25972 1193 -0.038015921827991406 IAVFMEHSF 9 Oxidation (M) _IAVFM(Oxidation (M))EHSF_ IAVFM(1)EHSF IAVFM(110)EHSF 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7607421875 2 548.760235 1095.50592 0.3972 0.00021797 -0.55337 -0.00030367 -0.15617 -8.5698E-05 548.760033046612 53.822 0.39532 53.355 53.152 53.547 -0.46664 76 19 5 0 0 0 0.0077963 2 29067 29067;29173 109.63 81.142 1 114120000 21943 6889 14858 15144 25973;25974 25973 1193 -0.038015921827991406 IAVFMEHSF 9 Oxidation (M) _IAVFM(Oxidation (M))EHSF_ IAVFM(1)EHSF IAVFM(97)EHSF 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7604370117188 2 548.760235 1095.50592 -0.1771 -9.7187E-05 0.018774 1.0303E-05 -0.15833 -8.6884E-05 548.7602687022651 53.499 0.31163 53.436 53.241 53.552 -0.063423 46 15 4 0 0 0 0.0083087 1 28963 28963 97.075 73.926 1 28245000 21944 6889 14858 15144 25975 25975 1193 -0.038015921827991406 IAVFMEHSF 9 Oxidation (M) _IAVFM(Oxidation (M))EHSF_ IAVFM(1)EHSF IAVFM(110)EHSF 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7606811523438 2 548.760235 1095.50592 0.81276 0.00044601 -0.12382 -6.7946E-05 0.68895 0.00037807 548.7605307550908 59.627 0.51003 53.513 53.286 53.796 -6.1147 78 28 4 0 0 0 0.0077963 2 38308 38175;38308 109.63 79.404 1 257010000 21945 6889 14858 15144 25976;25977 25977 1193 -0.038015921827991406 IAVFMEHSF 9 Unmodified _IAVFMEHSF_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7630615234375 2 540.762778 1079.511 0.31957 0.00017281 0.58246 0.00031497 0.90203 0.00048778 540.7632798978484 63.081 0.29358 63.06 62.888 63.182 -0.021614 38 14 4 0 0 0 0.0083087 1 34462 34462 97.075 58.923 1 8846200 21946 6889 14858 15145 25978 25978 -0.025572883201675722 IAVFMEHSF 9 Unmodified _IAVFMEHSF_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7637329101562 2 540.762778 1079.511 0.6807 0.0003681 -0.62384 -0.00033735 0.05686 3.0748E-05 540.762032767139 68.491 0.95142 62.316 61.992 62.943 -6.1757 100 54 4 0 0 0 0.0086179 3 44706 44581;44706;44839 89.427 51.276 1 95277000 21947 6889 14858 15145 25979;25980;25981 25980 -0.025572883201675722 IAVFMEHSF 9 Unmodified _IAVFMEHSF_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7601928710938 2 540.762778 1079.511 0.78311 0.00042348 -0.94453 -0.00051077 -0.16142 -8.729E-05 540.7619647979651 70.341 0.53744 64.165 63.958 64.496 -6.1757 42 29 2 0 0 0 0.0086179 2 45859 45859;45941 101.72 54.801 1 30865000 21948 6889 14858 15145 25982;25983 25982 -0.025572883201675722 IAVFMEHSF 9 Unmodified _IAVFMEHSF_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 540.762778 1079.511 0.65302 0.00035313 0.6725 0.00036366 1.3255 0.0007168 540.7616196006638 69.467 0.24478 63.292 63.132 63.377 -6.1757 0.1159 9.41E-05 NaN 97.075 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 18287000 21949 6889 14858 15145 -0.025572883201675722 IAVGLVPQY 9 Unmodified _IAVGLVPQY_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 959.55712890625 1 959.556044 958.548768 0.37505 0.00035989 1.1609 0.001114 1.536 0.0014738 959.55753840192 67.426 0.20574 66.944 66.802 67.007 -0.48219 15 8 2 0 0 0 0.068777 1 36787 36787 40.449 14.107 1 1418200 21950 7669 14859 15146 25984 25984 0.06783545936946211 IAVGLVPQY 9 Unmodified _IAVGLVPQY_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.281982421875 2 480.28166 958.548768 0.57629 0.00027678 -0.25116 -0.00012063 0.32512 0.00015615 480.2813561997722 67.409 0.40079 66.927 66.695 67.096 -0.48218 39 17 3 0 0 0 0.016494 1 36856 36856 67.035 34.918 1 4502200 21951 7669 14859 15146 25985 25985 0.06783545936946211 IAVGLVPQY 9 Unmodified _IAVGLVPQY_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2814636230469 2 480.28166 958.548768 1.0981 0.00052739 -0.090527 -4.3478E-05 1.0076 0.00048391 480.28164826093007 74.381 0.51069 68.206 67.944 68.454 -6.1757 46 26 2 0 0 0 0.016494 2 48631 48631;48753 67.035 38.548 1 21718000 21952 7669 14859 15146 25986;25987 25986 0.06783545936946211 IAVGLVPQY 9 Unmodified _IAVGLVPQY_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 480.28166 958.548768 0.73417 0.00035261 0.1544 7.4154E-05 0.88856 0.00042676 480.281450135437 66.884 0.27126 66.902 66.793 67.064 0.018036 -0.012547 0.00027308 NaN 67.035 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2430400 21953 7669 14859 15146 0.06783545936946211 IAVLCICFF 9 Unmodified _IAVLCICFF_ 0 0 0 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7674560546875 2 514.769017 1027.52348 NaN NaN NaN NaN NaN NaN NaN 81.377 1 81.377 80.877 81.877 0 0 0 0 0.70111 1 45166 45166 9.3474 0 1 21954 9976 14860 15147 25988 25988 0.010820318185096767 IAVLHEERF 9 Unmodified _IAVLHEERF_ 0 0 0 ENSG00000134049|ENST00000256433|IER3IP1 ENSG00000134049|ENST00000256433|IER3IP1 ENSG00000134049|ENST00000256433|IER3IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.8735961914062 3 371.873224 1112.59784 0.41126 0.00015294 0.56125 0.00020871 0.97251 0.00036165 371.8732033515899 38.885 0.2423 38.885 38.747 38.99 0 28 10 4 0 0 0 0.2324 1 20785 20785 19.626 8.1312 1 5929900 21955 4552 14861 15148 25989 25989 0.04604834225892773 IAVLHEERF 9 Unmodified _IAVLHEERF_ 0 0 0 ENSG00000134049|ENST00000256433|IER3IP1 ENSG00000134049|ENST00000256433|IER3IP1 ENSG00000134049|ENST00000256433|IER3IP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.873224 1112.59784 -0.029153 -1.0841E-05 -0.071784 -2.6695E-05 -0.10094 -3.7536E-05 371.8729018234634 39.172 0.15533 38.886 38.787 38.943 -0.28687 0.00046172 -0.00055322 NaN 19.626 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1064000 21956 4552 14861 15148 0.04604834225892773 IAVLQAEVY 9 Unmodified _IAVLQAEVY_ 0 0 0 nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2843933105469 2 503.2844 1004.55425 0.48319 0.00024318 0.63126 0.0003177 1.1144 0.00056088 503.2846608850907 63.593 0.28473 63.593 63.472 63.756 0 28 12 3 0 0 0 0.087258 1 35449 35449 36.044 15.591 1 2754000 21957 694 14862 15149 25990 25990 0.0521522472874949 IAVLQAEVY 9 Unmodified _IAVLQAEVY_ 0 0 0 nc|ENSG00000047932|Q9HD26-3|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;ENSG00000047932|ENST00000368498|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC nc|ENSG00000047932|Q9HD26-3|GOPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2856140136719 2 503.2844 1004.55425 0.21127 0.00010633 1.4301 0.00071977 1.6414 0.0008261 503.28496866128165 64.182 0.35224 63.697 63.492 63.844 -0.48512 28 16 2 0 0 0 0.16776 1 34990 34990 26.341 9.399 1 1594400 21958 694 14862 15149 25991 25991 0.0521522472874949 IAWAALHF 8 Unmodified _IAWAALHF_ 0 0 0 REV__ENSG00000111432|ENST00000229030|FZD10 REV__ENSG00000111432|ENST00000229030|FZD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.756591796875 2 464.755613 927.496673 0.24761 0.00011508 0.14809 6.8824E-05 0.3957 0.0001839 464.7556967997847 79.648 0.38078 79.703 79.468 79.849 0.054977 27 14 2 0 0 0 0.76859 1 43971 43971 11.114 0 1 2115000 + 21959 18752 14863 15150 25992 25992 0.030024273138451463 IAWESDLQF 9 Unmodified _IAWESDLQF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000583478.1_1_17:61514659-61514908:-|nuORF;nc|ENSG00000008283|P49447-2|CYB561;ENST00000577368.5_1_17:61512979-61514908:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.77099609375 2 554.769114 1107.52368 0.48145 0.0002671 1.6944 0.00093998 2.1758 0.0012071 554.7701192682074 81.635 0.31042 81.635 81.491 81.801 0 35 16 3 0 0 0 0.48152 1 45266 45266 8.5933 3.8373 1 1129300 21960 383 14864 15151 25993 25993 -0.02578553656303484 IAWESDLQF 9 Unmodified _IAWESDLQF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000583478.1_1_17:61514659-61514908:-|nuORF;nc|ENSG00000008283|P49447-2|CYB561;ENST00000577368.5_1_17:61512979-61514908:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7694091796875 2 554.769114 1107.52368 0.85896 0.00047653 0.44236 0.00024541 1.3013 0.00072193 554.7693901430844 82.209 0.4482 81.714 81.471 81.919 -0.4952 43 17 4 0 0 0 0.18465 2 44970 44970;45072 24.674 7.7316 1 3905700 21961 383 14864 15151 25994;25995 25994 -0.02578553656303484 IAWESDLQF 9 Unmodified _IAWESDLQF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000583478.1_1_17:61514659-61514908:-|nuORF;nc|ENSG00000008283|P49447-2|CYB561;ENST00000577368.5_1_17:61512979-61514908:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.767578125 2 554.769114 1107.52368 1.0658 0.0005913 -1.5567 -0.0008636 -0.49084 -0.0002723 554.7689279097939 89.935 1.0285 83.759 83.127 84.156 -6.1757 139 57 4 0 0 0 0.12841 1 59625 59625 30.225 12.09 1 74262000 21962 383 14864 15151 25996 25996 -0.02578553656303484 IAWLVMLAL 9 Unmodified _IAWLVMLAL_ 0 0 0 REV__ENST00000489651.5_1_22:20928956-20929091:+|nuORF REV__ENST00000489651.5_1_22:20928956-20929091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3138427734375 2 515.311906 1028.60926 0.36364 0.00018739 3.0869 0.0015907 3.4506 0.0017781 515.313610203239 68.834 0.19421 68.834 68.74 68.934 0 9 7 2 0 0 0 0.46577 1 38379 38379 9.3474 2.0582 1 348430 + 21963 27865 14865 15152 25997 25997 0.09609939995652894 IAYATVVLLI 10 Unmodified _IAYATVVLLI_ 0 0 0 REV__ENSG00000125895|ENST00000429036|TMEM74B REV__ENSG00000125895|ENST00000429036|TMEM74B MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3425903320312 2 538.341718 1074.66888 0.43746 0.0002355 0.31236 0.00016816 0.74982 0.00040366 538.3419650502242 99.099 0.13298 92.924 92.841 92.974 -6.1757 18 7 3 0 0 0 0.1028 1 65884 65884 46.021 2.2486 1 57555000 + 21964 19526 14866 15153 25998 25998 0.13453534210702855 ICCGDDCFFHY 11 Unmodified _ICCGDDCFFHY_ 0 0 0 REV__ENSG00000120256|ENST00000239367|LRP11 REV__ENSG00000120256|ENST00000239367|LRP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.4921875 3 441.49281 1321.4566 -0.34174 -0.00015087 -0.072405 -3.1966E-05 -0.41414 -0.00018284 441.4926156883844 33.796 0.31434 33.796 33.633 33.947 0 40 15 3 0 0 0 0.71728 1 17718 17718 2.6312 0 1 4669000 + 21965 19234 14867 15154 25999 25999 -0.19126991525558878 ICDTDPEL 8 Unmodified _ICDTDPEL_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A;nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2005615234375 2 453.199676 904.384799 0.44933 0.00020364 0.83607 0.00037891 1.2854 0.00058254 453.199801423435 63.337 0.42364 63.337 63.096 63.52 0 51 21 3 0 0 0 0.75262 1 35255 35255 12.532 0 1 9610800 21966 1876;10904;10581 14868 15155 26000 26000 -0.07121839616104353 ICFCCEEF 8 Unmodified _ICFCCEEF_ 0 0 0 ENSG00000135063|ENST00000303068|ENTREP1;nc|ENSG00000135063|Q15884|ENTREP1 ENSG00000135063|ENST00000303068|ENTREP1 ENSG00000135063|ENST00000303068|ENTREP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.1798400878906 2 497.179375 992.344196 -0.045737 -2.274E-05 0.98441 0.00048943 0.93867 0.00046669 497.17990789876853 56.299 0.67751 56.299 56.028 56.705 0 125 30 6 0 0 0 0.80624 1 31218 31218 2.8892 2.8892 1 23041000 21967 4665 14869 15156 26001 26001 -0.15228220531741954 ICFLTLAVL 9 Unmodified _ICFLTLAVL_ 0 0 0 REV__ENSG00000268320|ENST00000595228|SCGB1C2 REV__ENSG00000268320|ENST00000595228|SCGB1C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 992.5851440429688 1 992.584902 991.577625 -0.2772 -0.00027514 0.32225 0.00031986 0.045049 4.4715E-05 992.5853068498471 101.64 0.11867 101.59 101.55 101.67 -0.045853 5 3 2 0 0 0 0.087258 1 56483 56483 36.044 1.9418 1 8577100 + 21968 23688 14870 15157 26002 26002 0.08149947241724931 ICGGASCH 8 Unmodified _ICGGASCH_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1;ENST00000559133.5_3_15:48703189-48720097:-|nuORF ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2796020507812 2 374.149266 746.283979 4.2453 0.0015884 -2.3916 -0.00089482 1.8537 0.00069356 374.1482372388245 98.964 0.33248 98.936 98.804 99.137 -0.028282 14 11 2 0 0 0 8.7369 1 55018 55018 0.79363 0 1 785320 21969 7437 14871 15158 26003 26003 -0.0993115007996721 ICGLDTET 8 Unmodified _ICGLDTET_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A ENSG00000184014|ENST00000328194|DENND5A ENSG00000184014|ENST00000328194|DENND5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.1950073242188 2 426.194393 850.374234 NaN NaN NaN NaN NaN NaN NaN 48.011 1 48.011 47.511 48.511 0 0 0 0 0.97348 1 26315 26315 5.7604 2.8712 1 21970 9217 14872 15159 26004 26004 -0.05693822270552573 ICIPERLVI 9 Unmodified _ICIPERLVI_ 0 0 0 REV__nc|ENSG00000168748|P43166-2|CA7 REV__nc|ENSG00000168748|P43166-2|CA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3192749023438 2 528.31772 1054.62089 NaN NaN NaN NaN NaN NaN NaN 28.893 1 28.923 28.423 29.423 0.030106 0 0 0 0.73776 1 15057 15057 1.8442 1.2427 1 + 21971 22337 14873 15160 26005 26005 0.0957613701898481 ICLPEPGSSF 10 Unmodified _ICLPEPGSSF_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7692260742188 2 525.252243 1048.48993 0.83249 0.00043727 -3.7371 -0.0019629 -2.9046 -0.0015257 525.2500854195619 80.213 0.45528 79.724 79.428 79.884 -0.48932 26 17 3 0 0 0 0.23634 1 43935 43935 3.5965 0 1 920760 + 21972 143 14874 15161 26006 26006 -0.032372984196854304 ICLVRVFR 8 Unmodified _ICLVRVFR_ 0 0 0 KCNA4|p.R447C|1|0.05|ENSG00000182255|chr11:30011340-30011340|G/A|missense_variant KCNA4|p.R447C|1|0.05|ENSG00000182255|chr11:30011340-30011340|G/A|missense_variant KCNA4|p.R447C|1|0.05|ENSG00000182255|chr11:30011340-30011340|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 503.3056945800781 2 503.304947 1004.59534 NaN NaN NaN NaN NaN NaN NaN 107.81 1 101.64 101.14 102.14 -6.1757 0 0 0 0.97444 1 72087 72087 0.79363 0 1 21973 15934 14875 15162 26007 26007 0.09322707287242338 ICNDKYFYI 9 Carbamidomethyl (C) _IC(Carbamidomethyl (C))NDKYFYI_ IC(1)NDKYFYI IC(60)NDKYFYI 0 1 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.7927856445312 2 618.291899 1234.56925 1.1557 0.00071458 2.3119 0.0014294 3.4676 0.002144 618.2918889707478 64.518 1.0428 58.342 57.841 58.884 -6.1757 141 56 4 0 0 0 0.023481 1 42042 42042 60.074 18.234 1 76701000 21974 8680 14876 15163 26008 26008 827 -0.03865651465548581 ICPAQICEI 9 Unmodified _ICPAQICEI_ 0 0 0 REV__ENST00000509227.1_1_5:78940498-78940588:+|nuORF REV__ENST00000509227.1_1_5:78940498-78940588:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.2452087402344 2 495.243363 988.472174 NaN NaN NaN NaN NaN NaN NaN 87.46 1 81.284 80.784 81.784 -6.1757 0 0 0 0.26667 1 57674 57674 26.884 2.2098 1 + 21975 28126 14877 15164 26009 26009 -0.022523369462078335 ICRCFIFYFWY 11 Unmodified _ICRCFIFYFWY_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.911376953125 3 520.910405 1559.70938 0.11486 5.9833E-05 1.2681 0.00066059 1.383 0.00072042 521.2456036326894 25.192 0.21374 22.309 22.211 22.425 -2.8831 35 20 2 0 0 0 0.71036 1 13729 13729 1.3296 0 1 9711800 21976 11338 14878 15165 26010 26010 -0.04808190732842377 ICRCFIFYFWY 11 Unmodified _ICRCFIFYFWY_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 520.910405 1559.70938 -0.041738 -2.1742E-05 2.0809 0.0010839 2.0391 0.0010622 520.9118723422445 22.188 0.19892 22.188 22.065 22.264 0 -0.060788 0.00092371 NaN 1.3296 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1450500 21977 11338 14878 15165 -0.04808190732842377 ICRCFIFYFWY 11 Unmodified _ICRCFIFYFWY_ 0 0 0 ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF ENST00000265870.7_1_10:70248298-70276562:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 520.910405 1559.70938 0.11486 5.9833E-05 1.2681 0.00066059 1.383 0.00072042 521.2456036326894 25.192 0.21374 22.309 22.211 22.425 -2.8831 0.060788 -0.00034634 NaN 1.3296 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 9711800 21978 11338 14878 15165 -0.04808190732842377 ICRRRPPLAGL 11 Unmodified _ICRRRPPLAGL_ 0 0 0 ENSG00000187650|ENST00000339485|VMAC ENSG00000187650|ENST00000339485|VMAC ENSG00000187650|ENST00000339485|VMAC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9208374023438 3 417.920403 1250.73938 0.29394 0.00012284 0.90843 0.00037965 1.2024 0.00050249 417.92067857490593 40.091 0.94405 40.096 39.688 40.633 0.0050545 154 44 4 0 0 0 0.74046 1 21513 21513 0.45452 0.046251 1 35230000 21979 9576 14879 15166 26011 26011 0.1240392904737746 ICRYYKLDK 9 Unmodified _ICRYYKLDK_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2188415527344 3 401.218115 1200.63251 -0.65554 -0.00026302 1.7381 0.00069735 1.0825 0.00043434 401.21857149449227 15.041 0.13983 15.041 14.941 15.081 0 57 37 2 0 0 0 0.59532 1 7161 7161 2.2828 1.8745 1 816100 + 21980 18891 14880 15167 26012 26012 0.04022334042338116 ICRYYKLDK 9 Unmodified _ICRYYKLDK_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 401.218115 1200.63251 -0.65554 -0.00026302 1.7381 0.00069735 1.0825 0.00043434 401.21857149449227 15.041 0.13983 15.041 14.941 15.081 0 0.022694 -0.000275 NaN 2.2828 57 37 2 NaN NaN NaN NaN 0 NaN NaN 0 816100 + 21981 18891 14880 15167 0.04022334042338116 ICRYYKLDK 9 Unmodified _ICRYYKLDK_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 401.218115 1200.63251 -0.53023 -0.00021274 2.2965 0.0009214 1.7663 0.00070867 401.55359286683904 15.009 0.094083 14.995 14.922 15.016 -0.014066 -0.022694 0.00039715 NaN 2.2828 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 567640 + 21982 18891 14880 15167 0.04022334042338116 ICTECGKVF 9 Unmodified _ICTECGKVF_ 0 0 0 nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2359313964844 2 500.235538 998.456524 -0.46414 -0.00023218 1.3394 0.00067004 0.87531 0.00043786 500.2358963547645 33.184 0.38175 33.025 32.762 33.144 -0.15918 24 15 2 0 0 0 0.49272 1 17258 17258 7.9102 0 1 1583400 21983 5824 14881 15168 26013 26013 -0.0427662346322677 ICTECGKVF 9 Unmodified _ICTECGKVF_ 0 0 0 nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2369689941406 2 500.235538 998.456524 -0.47118 -0.0002357 0.96511 0.00048278 0.49393 0.00024708 500.2361813510665 33.547 0.47474 33.388 33.078 33.553 -0.15918 42 19 3 0 0 0 0.49272 1 17480 17480 7.9102 0 1 1975300 21984 5824 14881 15168 26014 26014 -0.0427662346322677 ICTECGKVF 9 Unmodified _ICTECGKVF_ 0 0 0 nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 nc|ENSG00000147124|P51814-4|ZNF41 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.235538 998.456524 -0.37391 -0.00018704 0.14527 7.2671E-05 -0.22864 -0.00011437 500.235340324201 33.107 0.33692 33.107 32.927 33.264 0 -0.14046 -0.00048769 NaN 7.9102 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2656200 21985 5824 14881 15168 -0.0427662346322677 ICTRVHHE 8 Unmodified _ICTRVHHE_ 0 0 0 REV__nc|ENSG00000135503|P36896-4|ACVR1B REV__nc|ENSG00000135503|P36896-4|ACVR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7479858398438 2 497.747993 993.481433 -0.12414 -6.1792E-05 0.82836 0.00041231 0.70422 0.00035052 497.748376912477 53.863 0.26876 53.796 53.672 53.941 -0.066936 23 13 2 0 0 0 0.77186 1 29232 29232 10.824 1.4765 1 3146200 + 21986 29646 14882 15169 26015 26015 -0.015568075456599217 ICTVRSMEQL 10 Unmodified _ICTVRSMEQL_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS AL20221201_MKP_PDAC_01 4 590.296142578125 2 590.296659 1178.57876 NaN NaN NaN NaN NaN NaN NaN 73.307 1 67.131 66.631 67.631 -6.1757 0 0 0 0.21506 1 47943 47943 41.956 14.327 1 21987 1358 14883 15170 26016 26016 -0.0033820645166997565 ICVHRKQCL 9 Unmodified _ICVHRKQCL_ 0 0 0 REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1 REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1996765136719 3 367.200289 1098.57904 -0.74533 -0.00027368 2.106 0.00077331 1.3606 0.00049963 367.201083457565 28.015 0.32507 28.015 27.884 28.209 0 30 19 2 0 0 0 0.39863 1 14458 14458 8.1555 1.0538 1 4869400 + 21988 17442 14884 15171 26017 26017 0.03369258058842206 ICWTFSRE 8 Unmodified _ICWTFSRE_ 0 0 0 REV__ENST00000471257.5_1_1:235377084-235377189:-|nuORF REV__ENST00000471257.5_1_1:235377084-235377189:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.243408203125 2 521.244752 1040.47495 0.23621 0.00012312 -0.98641 -0.00051416 -0.75021 -0.00039104 521.2443587395401 103.59 0.032089 103.48 103.46 103.49 -0.10458 14 10 2 0 0 0 0.79887 1 56504 56504 7.2892 0.56607 1 1316600 + 21989 27492 14885 15172 26018 26018 -0.04366745497009106 ICYFFFQNLDF 11 Unmodified _ICYFFFQNLDF_ 0 0 0 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2240600585938 3 486.225046 1455.65331 0.20245 9.8437E-05 -1.1499 -0.00055909 -0.94741 -0.00046065 486.22438729527835 37.646 0.21452 37.646 37.549 37.764 0 20 10 3 0 0 0 0.72952 1 20043 20043 0.50596 0 1 2339100 21990 9712 14886 15173 26019 26019 -0.056291203686441804 ICYFFFQNLDF 11 Unmodified _ICYFFFQNLDF_ 0 0 0 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 486.225046 1455.65331 0.20245 9.8437E-05 -1.1499 -0.00055909 -0.94741 -0.00046065 486.22438729527835 37.646 0.21452 37.646 37.549 37.764 0 -0.12266 -0.00097257 NaN 0.50596 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2339100 21991 9712 14886 15173 -0.056291203686441804 IDADPCNCEPF 11 Unmodified _IDADPCNCEPF_ 0 0 0 REV__ENSG00000198797|ENST00000361539|BRINP2;REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF REV__ENSG00000198797|ENST00000361539|BRINP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.241455078125 2 612.239006 1222.46346 0.38831 0.00023774 3.2847 0.002011 3.673 0.0022488 612.2405827220077 58.03 0.23492 58.03 57.944 58.179 0 15 9 2 0 0 0 0.68427 1 32352 32352 5.7319 1.4026 1 815380 + 21992 24062;27629 14887 15174 26020 26020 -0.1388735537334469 IDAELPPESP 10 Unmodified _IDAELPPESP_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;nc|ENSG00000007174|Q9NYC9-3|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2672729492188 2 534.266404 1066.51826 -0.20661 -0.00011038 1.2524 0.00066912 1.0458 0.00055874 534.2669120632306 20.657 0.20661 20.657 20.55 20.757 0 31 13 3 0 0 0 0.67033 1 10376 10376 6.2058 1.4498 1 1930400 21993 358 14888 15175 26021 26021 -0.012342772387682999 IDASFEAHF 9 Unmodified _IDASFEAHF_ 0 0 0 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2680053710938 2 518.740357 1035.46616 1.3431 0.00069671 0.11694 6.0661E-05 1.46 0.00075737 518.7403786405149 64.544 0.77805 58.369 58.09 58.868 -6.1757 86 42 3 0 0 0 0.19613 1 42135 42135 7.9102 0 1 41949000 + 21994 21255 14889 15176 26022 26022 -0.05015395861846628 IDASIYELV 9 Unmodified _IDASIYELV_ 0 0 0 REV__ENSG00000100485|ENST00000216373|SOS2;REV__ENSG00000115904|ENST00000402219|SOS1 REV__ENSG00000100485|ENST00000216373|SOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7755126953125 2 511.773865 1021.53318 0.28233 0.00014449 -0.37449 -0.00019165 -0.092164 -4.7167E-05 511.77411449010896 77.17 0.1738 77.17 77.068 77.242 0 14 7 2 0 0 0 0.30562 1 42890 42890 16.942 4.4107 1 376780 + 21995 18074;19014 14890 15177 26023 26023 0.023272146292470097 IDCLFEKLYL 10 Unmodified _IDCLFEKLYL_ 0 0 0 ENSG00000137364|ENST00000309983|TPMT ENSG00000137364|ENST00000309983|TPMT ENSG00000137364|ENST00000309983|TPMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5593872070312 3 419.558025 1255.65225 0.65047 0.00027291 -0.088633 -3.7187E-05 0.56184 0.00023572 419.55799892503285 38.7 0.32344 34.249 34.056 34.379 -4.4509 36 20 2 0 0 0 0.61603 1 22794 22794 10.315 10.315 1 18921000 21996 4926 14891 15178 26024 26024 0.03464665262458766 IDDDVDIVCC 10 Unmodified _IDDDVDIVCC_ 0 0 0 REV__ENSG00000185875|ENST00000376356|THNSL1 REV__ENSG00000185875|ENST00000376356|THNSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2290649414062 2 555.228107 1108.44166 0.63332 0.00035164 1.6089 0.00089332 2.2422 0.001245 555.2283224256844 92.222 0.22762 91.741 91.608 91.836 -0.48092 14 9 2 0 0 0 0.71276 1 50400 50400 1.4819 0.68827 1 226790 + 21997 23529 14892 15179 26025 26025 -0.10822160121892921 IDDDVDIVCC 10 Unmodified _IDDDVDIVCC_ 0 0 0 REV__ENSG00000185875|ENST00000376356|THNSL1 REV__ENSG00000185875|ENST00000376356|THNSL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.228107 1108.44166 0.63332 0.00035164 1.6089 0.00089332 2.2422 0.001245 555.2283224256844 92.222 0.22762 91.741 91.608 91.836 -0.48092 0 0 NaN 1.4819 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 226790 + 21998 23529 14892 15179 -0.10822160121892921 IDDFSECCPL 10 Unmodified _IDDFSECCPL_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2310791015625 2 571.23065 1140.44675 0.85522 0.00048853 -0.56011 -0.00031995 0.29511 0.00016858 571.2303787847961 73.662 0.28079 73.186 73.018 73.299 -0.47588 29 11 3 0 0 0 0.56675 1 40299 40299 14.838 3.198 1 2813500 21999 641 14893 15180 26026 26026 -0.11785856259280081 IDDFSECCPL 10 Unmodified _IDDFSECCPL_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.23065 1140.44675 0.71119 0.00040625 -0.62904 -0.00035933 0.082143 4.6923E-05 571.2303399535683 73.138 0.43636 73.138 72.985 73.421 0 -0.023958 -3.7796E-05 NaN 14.838 41 21 3 NaN NaN NaN NaN 0 NaN NaN 0 6775500 22000 641 14893 15180 -0.11785856259280081 IDDSDNFSDSA 11 Unmodified _IDDSDNFSDSA_ 0 0 0 ENSG00000182405|ENST00000397766|PGBD4 ENSG00000182405|ENST00000397766|PGBD4 ENSG00000182405|ENST00000397766|PGBD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.2300415039062 2 593.230747 1184.44694 -0.47125 -0.00027956 -1.0417 -0.00061796 -1.5129 -0.00089752 593.2302492538934 53.641 0.44226 53.577 53.463 53.905 -0.063423 91 28 4 0 0 0 0.69316 1 29192 29192 4.897 2.8373 1 62607000 22001 9053 14894 15181 26027 26027 -0.13790441734067826 IDDWILMGF 9 Unmodified _IDDWILMGF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7742309570312 2 555.270435 1108.52632 0.66207 0.00036763 0.11834 6.5712E-05 0.78041 0.00043334 555.2702566282951 89.54 0.32878 89.038 88.843 89.172 -0.50171 36 13 4 0 0 0 0.53666 1 48947 48947 5.2307 2.3415 1 1488100 22002 3021 14895 15182 26028 26028 -0.023604215229852343 IDEARHGKNI 10 Unmodified _IDEARHGKNI_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.8024291992188 2 576.809636 1151.60472 0.12095 6.9764E-05 -4.0462 -0.0023339 -3.9253 -0.0022641 576.8077924340406 98.825 0.44667 92.649 92.493 92.94 -6.1757 54 31 2 0 0 0 0.16361 1 65788 65788 38.176 5.3899 1 91972000 22003 9628 14896 15183 26029 26029 0.03498147106483884 IDEEKEEDEE 10 Unmodified _IDEEKEEDEE_ 0 0 0 REV__ENSG00000100697|ENST00000343455|DICER1 REV__ENSG00000100697|ENST00000343455|DICER1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.2291564941406 3 422.173622 1263.49904 1.4238 0.0006011 -1.3161 -0.00055562 0.10773 4.5481E-05 422.17301119128786 95.305 0.32355 89.129 88.872 89.195 -6.1757 29 17 2 0 0 0 0.23996 1 63046 63046 0.56317 0.10865 1 6615700 + 22004 18102 14897 15184 26030 26030 -0.12217323110962752 IDEEPGEML 9 Unmodified _IDEEPGEML_ 0 0 0 REV__nc|ENSG00000090565|O75154-2|RAB11FIP3 REV__nc|ENSG00000090565|O75154-2|RAB11FIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7321166992188 2 516.73134 1031.44813 0.64029 0.00033086 0.28571 0.00014764 0.926 0.00047849 516.7315167586754 60.052 0.25693 60.052 59.943 60.199 0 20 11 2 0 0 0 0.23158 1 33501 33501 20.454 1.0146 1 3627200 + 22005 17863 14898 15185 26031 26031 -0.06633898898871848 IDEETYEE 8 Unmodified _IDEETYEE_ 0 0 0 ENSG00000170860|ENST00000306024|LSM3 ENSG00000170860|ENST00000306024|LSM3 ENSG00000170860|ENST00000306024|LSM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1028.420776367188 1 1027.41023 1026.40295 0.74082 0.00076113 -0.94959 -0.00097562 -0.20877 -0.0002145 1028.408740963272 74.207 0.066238 68.031 67.977 68.044 -6.1757 4 2 2 0 0 0 0.80676 1 48487 48487 2.5775 0 1 7851200 22006 8034 14899 15186 26032 26032 -0.10919426160421608 IDEEYIHYDLF 11 Unmodified _IDEEYIHYDLF_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2240600585938 3 486.22588 1455.65581 -0.037939 -1.8447E-05 0.01659 8.0663E-06 -0.02135 -1.0381E-05 486.22652165385176 52.103 0.70416 52.103 51.583 52.287 0 54 31 2 0 0 0 0.71036 1 28674 28674 1.3296 0.11481 1 8737000 + 22007 22458 14900 15187 26033 26033 -0.05378993429985712 IDEFMKIDL 9 Unmodified _IDEFMKIDL_ 0 0 0 nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1;nc|ENSG00000185024|Q92994-2|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 MSMS AL20221201_MKP_PDAC_01 4 562.2884521484375 2 562.288825 1122.5631 NaN NaN NaN NaN NaN NaN NaN 103.3 1 97.12 96.62 97.62 -6.1757 0 0 0 0.67877 1 69265 69265 10.074 0.72649 1 22008 9320 14901 15188 26034 26034 0.006718303029174422 IDELYPFVT 9 Unmodified _IDELYPFVT_ 0 0 0 REV__nc|ENSG00000112303|O95498-6|VNN2 REV__nc|ENSG00000112303|O95498-6|VNN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1907958984375 3 366.190219 1095.54883 0.0086773 3.1776E-06 0.30674 0.00011233 0.31542 0.0001155 366.1902661783869 17.871 0.20368 17.876 17.716 17.92 0.0050564 23 14 2 0 0 0 0.55775 1 8979 8979 4.5289 2.4429 1 886080 + 22009 18807 14902 15189 26035 26035 0.004875011462900147 IDENEEITTTF 11 Unmodified _IDENEEITTTF_ 0 0 0 nc|ENSG00000000005|Q9H2S6-2|TNMD;nc|ENSG00000000005|Q9H2S6-3|TNMD;ENSG00000000005|ENST00000373031|TNMD nc|ENSG00000000005|Q9H2S6-2|TNMD nc|ENSG00000000005|Q9H2S6-2|TNMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.3011474609375 2 656.301172 1310.58779 0.24778 0.00016262 0.20165 0.00013234 0.44943 0.00029496 656.3013051204416 60.816 0.5035 60.816 60.646 61.149 0 56 20 5 0 0 0 0.56638 1 33964 33964 13.042 3.6593 1 6690400 22010 248 14903 15190 26036 26036 -0.055078630806974616 IDENGDLDAEF 11 Unmodified _IDENGDLDAEF_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1773071289062 3 413.178819 1236.51463 -0.68131 -0.0002815 -2.7014 -0.0011162 -3.3827 -0.0013977 413.17756371883155 34.48 0.19453 34.48 34.402 34.597 0 13 9 2 0 0 0 0.73389 1 18219 18219 0.36667 0 1 1469100 + 22011 24200 14904 15191 26037 26037 -0.09416991803277597 IDERWVQI 8 Unmodified _IDERWVQI_ 0 0 0 REV__ENST00000566672.5_1_15:72638574-72647950:-|nuORF REV__ENST00000566672.5_1_15:72638574-72647950:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7813720703125 2 529.785099 1057.55564 0.43022 0.00022792 -1.9668 -0.001042 -1.5366 -0.00081406 529.7825812846288 65.329 0.85535 59.153 58.868 59.723 -6.1757 114 49 4 0 0 0 0.63229 1 42746 42746 23.148 6.0355 1 104900000 + 22012 24288 14905 15192 26038 26038 0.029168588175252808 IDFDLSHHF 9 Unmodified _IDFDLSHHF_ 0 0 0 REV__ENSG00000159915|ENST00000683810|ZNF233 REV__ENSG00000159915|ENST00000683810|ZNF233 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7666625976562 2 565.766906 1129.51926 -0.075179 -4.2534E-05 0.87113 0.00049286 0.79595 0.00045032 565.7673687091626 71.089 0.22897 71.089 70.935 71.164 0 18 9 3 0 0 0 0.54444 1 39582 39582 4.756 0 1 605570 + 22013 21506 14906 15193 26039 26039 -0.04032018079192312 IDFLDHSTL 9 Unmodified _IDFLDHSTL_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.275146484375 2 530.769114 1059.52368 0.33967 0.00018029 -0.050327 -2.6712E-05 0.28934 0.00015357 530.7691588265163 48.119 0.92764 48.119 47.767 48.695 0 118 34 4 0 0 0 0.30562 1 26584 26584 16.942 5.302 1 944940000 + 22014 21189 14907 15194 26040 26040 -0.0037055365628475556 IDFMWLASF 9 Unmodified _IDFMWLASF_ 0 0 0 REV__ENST00000261244.9_1_14:58894825-58894900:+|nuORF REV__ENST00000261244.9_1_14:58894825-58894900:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2715454101562 2 565.272978 1128.5314 1.3637 0.00077085 4.1317 0.0023355 5.4954 0.0031064 565.2753040845042 47.898 1.3408 42.664 41.801 43.142 -5.2339 138 84 2 0 0 0 0.2143 1 29822 29822 21.747 1.293 1 86492000 + 22015 24977 14908 15195 26041 26041 -0.027721176603563435 IDFRYSQF 8 Unmodified _IDFRYSQF_ 0 0 0 ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4 ENST00000505451.5_1_4:25314431-25353701:+|nuORF ENST00000505451.5_1_4:25314431-25353701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2610473632812 2 538.263999 1074.51345 0.43704 0.00023524 -2.3564 -0.0012684 -1.9194 -0.0010331 538.7656672796793 74.734 0.26507 74.734 74.582 74.847 0 16 11 2 0 0 0 0.80624 1 41618 41618 2.8892 0.31174 1 1005400 22016 7731 14909 15196 26042 26042 -0.020831165908703042 IDFTFGPIN 9 Unmodified _IDFTFGPIN_ 0 0 0 REV__ENSG00000138829|ENST00000262464|FBN2 REV__ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2601318359375 2 512.260925 1022.5073 0.64762 0.00033175 0.1628 8.3395E-05 0.81042 0.00041514 512.2612852327115 67.193 0.55949 61.017 60.808 61.368 -6.1757 60 22 3 0 0 0 0.28023 1 43843 43843 18.146 0 1 43301000 + 22017 20376 14910 15197 26043 26043 -0.0030563482237084827 IDFYFDENLYF 11 Unmodified _IDFYFDENLYF_ 0 0 0 ENST00000514799.1_1_5:59755891-59756539:-|nuORF ENST00000514799.1_1_5:59755891-59756539:-|nuORF ENST00000514799.1_1_5:59755891-59756539:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.3314208984375 2 743.332276 1484.65 NaN NaN NaN NaN NaN NaN NaN 44.953 1 44.629 44.129 45.129 -0.32425 0 0 0 0.93613 1 23994 23994 5.2969 0.39987 1 22018 14660 14911 15198 26044 26044 -0.07294091941662373 IDFYFDENLYF 11 Unmodified _IDFYFDENLYF_ 0 0 0 ENST00000514799.1_1_5:59755891-59756539:-|nuORF ENST00000514799.1_1_5:59755891-59756539:-|nuORF ENST00000514799.1_1_5:59755891-59756539:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.3322143554688 2 743.332276 1484.65 NaN NaN NaN NaN NaN NaN NaN 48.265 1 47.895 47.395 48.395 -0.37043 0 0 0 0.94165 1 25899 25899 1.3295 0 1 22019 14660 14911 15198 26045 26045 -0.07294091941662373 IDFYSGFASA 10 Unmodified _IDFYSGFASA_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2505493164062 2 539.248015 1076.48148 0.24774 0.00013359 4.1445 0.0022349 4.3923 0.0023685 539.2499781681631 83.652 0.22359 83.652 83.457 83.68 0 15 10 2 0 0 0 0.69917 1 46360 46360 2.9952 0.93549 1 251700 + 22020 18573 14912 15199 26046 26046 -0.05370529064657603 IDFYSGFASA 10 Unmodified _IDFYSGFASA_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.248015 1076.48148 0.24774 0.00013359 4.1445 0.0022349 4.3923 0.0023685 539.2499781681631 83.652 0.22359 83.652 83.457 83.68 0 0.049072 0.00032389 NaN 2.9952 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 251700 + 22021 18573 14912 15199 -0.05370529064657603 IDFYSGFASA 10 Unmodified _IDFYSGFASA_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.248015 1076.48148 0.37385 0.0002016 3.8158 0.0020577 4.1896 0.0022593 539.2500070658049 84.054 0.43673 83.554 83.339 83.775 -0.49961 -0.049072 -3.0658E-05 NaN 2.9952 46 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3564700 + 22022 18573 14912 15199 -0.05370529064657603 IDGDRKQM 8 Unmodified _IDGDRKQM_ 0 0 0 REV__nc|ENSG00000284862|Q9UFE4-2|CCDC39 REV__nc|ENSG00000284862|Q9UFE4-2|CCDC39 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.2637329101562 2 481.739834 961.465115 1.4557 0.00070128 1.5024 0.00072376 2.9581 0.001425 481.7403869916535 62.407 0.23858 56.232 56.104 56.343 -6.1757 17 12 2 0 0 0 8.7369 1 40265 40265 13.508 1.8676 1 10804000 + 22023 30014 14913 15200 26047 26047 -0.01715933502396183 IDGEQLGCEEL 11 Unmodified _IDGEQLGCEEL_ 0 0 0 REV__ENSG00000214097|ENST00000397537|SMCO1 REV__ENSG00000214097|ENST00000397537|SMCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.5163269042969 3 402.516666 1204.52817 0.14303 5.7572E-05 -3.9569 -0.0015927 -3.8138 -0.0015351 402.5161724032847 59.252 0.33206 59.252 59.068 59.4 0 34 13 4 0 0 0 0.67037 1 33014 33014 7.0371 1.2537 1 5587200 + 22024 24306 14914 15201 26048 26048 -0.06591457295667169 IDGESESGSS 10 Unmodified _IDGESESGSS_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.1959228515625 2 484.196176 966.377799 NaN NaN NaN NaN NaN NaN NaN 96.284 1 96.284 95.784 96.784 0 0 0 0 0.99248 1 53209 53209 1.4819 0.68827 1 + 22025 22028 14915 15202 26049 26049 -0.10673480962975646 IDGGKDLL 8 Unmodified _IDGGKDLL_ 0 0 0 REV__nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 REV__nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.463623046875 1 830.46181 829.454533 1.3182 0.0010947 -0.095691 -7.9468E-05 1.2225 0.0010152 830.4616413008494 54.116 0.31717 48.25 48.066 48.383 -5.8653 22 17 2 0 0 0 0.15594 1 34222 34222 85.272 3.408 1 7407500 + 22026 29631 14916 15203 26050 26050 0.03298407114800739 IDGGVELKNI 10 Unmodified _IDGGVELKNI_ 0 0 0 REV__nc|ENSG00000170298|Q3B8N2-2|LGALS9B REV__nc|ENSG00000170298|Q3B8N2-2|LGALS9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7529907226562 2 529.298039 1056.58152 -0.077631 -4.109E-05 3.9209 0.0020753 3.8433 0.0020342 529.301636210175 55.821 0.14197 55.343 55.259 55.401 -0.47798 9 6 2 0 0 0 0.22667 1 30243 30243 10.824 0 1 1237400 + 22027 22469 14917 15204 26051 26051 0.055497082691545074 IDGIWEGTRDF 11 Unmodified _IDGIWEGTRDF_ 0 0 0 PNLIP|p.D329Efs*2|1|0.31|ENSG00000175535|chr10:116559208-116559209|-/A|frameshift_variant;ENSG00000175535|ENST00000369221|PNLIP PNLIP|p.D329Efs*2|1|0.31|ENSG00000175535|chr10:116559208-116559209|-/A|frameshift_variant PNLIP|p.D329Efs*2|1|0.31|ENSG00000175535|chr10:116559208-116559209|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8783264160156 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 32.048 1 32.048 31.548 32.548 0 0 0 0 0.94037 1 16718 16718 2.2527 0.51045 1 22028 8524 14918 15205 26052 26052 -0.026887096788186682 IDGLLWNEF 9 Unmodified _IDGLLWNEF_ 0 0 0 REV__ENST00000433917.5_1_X:128946700-128957662:-|nuORF REV__ENST00000433917.5_1_X:128946700-128957662:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7772827148438 2 553.779482 1105.54441 0.62487 0.00034604 0.17128 9.485E-05 0.79615 0.00044089 553.7793567906214 67.901 0.30469 61.725 61.567 61.871 -6.1757 21 17 2 0 0 0 0.23158 1 44259 44259 20.454 0 1 28468000 + 22029 27005 14919 15206 26053 26053 -0.004139632766509749 IDGVPHLI 8 Unmodified _IDGVPHLI_ 0 0 0 ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A;ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENST00000413684.1_1_2:91935968-91936997:-|nuORF ENSG00000183955|ENST00000402868|KMT5A ENSG00000183955|ENST00000402868|KMT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2522888183594 2 432.252903 862.491253 0.42572 0.00018402 -1.0223 -0.0004419 -0.5966 -0.00025788 432.25240974394933 62.22 0.22838 62.187 62.044 62.272 -0.032787 24 11 3 0 0 0 0.44122 1 33977 33977 40.449 2.2974 1 9117800 22030 9211 14920 15207 26054 26054 0.05450703731378326 IDHILDWQP 9 Unmodified _IDHILDWQP_ 0 0 0 nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3 nc|ENSG00000100012|Q9UDX4-2|SEC14L3 nc|ENSG00000100012|Q9UDX4-2|SEC14L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2831420898438 2 568.790381 1135.56621 0.59641 0.00033923 -3.3103 -0.0018829 -2.7139 -0.0015436 569.2875218325595 53.349 0.46697 53.349 53.08 53.547 0 31 20 2 0 0 0 0.31356 1 29550 29550 17.113 3.2068 1 4096800 22031 1736 14921 15208 26055 26055 0.003848414719413995 IDHQEHPRDR 10 Unmodified _IDHQEHPRDR_ 0 0 0 ENSG00000268629|ENST00000600991|TEX13A ENSG00000268629|ENST00000600991|TEX13A ENSG00000268629|ENST00000600991|TEX13A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825988769531 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 47.127 1 47.127 46.627 47.627 0 0 0 0 0.99248 1 25793 25793 0.62683 0 1 22032 10873 14922 15209 26056 26056 -0.016251376386890115 IDHTQYKF 8 Unmodified _IDHTQYKF_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4 MSMS AL20221201_MKP_PDAC_01 4 351.1807250976562 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 74.466 1 68.29 67.79 68.79 -6.1757 0 0 0 0.95607 1 48684 48684 6.7232 2.1943 1 22033 10856;2625;4477 14923 15210 26057 26057 -0.0097911659086094 IDHTQYKF 8 Unmodified _IDHTQYKF_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4 MSMS AL20221201_MKP_PDAC_01 4 351.1801452636719 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 75.941 1 69.765 69.265 70.265 -6.1757 0 0 0 0.95607 1 49674 49674 6.7232 2.5337 1 22034 10856;2625;4477 14923 15210 26058 26058 -0.0097911659086094 IDIGPYCNVRF 11 Unmodified _IDIGPYCNVRF_ 0 0 0 REV__ENSG00000163666|ENST00000295934|HESX1 REV__ENSG00000163666|ENST00000295934|HESX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8851928710938 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 51.735 1 51.735 51.235 52.235 0 0 0 0 0.94181 1 28594 28594 1.2148 0 1 + 22035 21800 14924 15211 26059 26059 -0.0027487130862482445 IDIKGKGK 8 Unmodified _IDIKGKGK_ 0 0 0 REV__ENSG00000133138|ENST00000357242|TBC1D8B REV__ENSG00000133138|ENST00000357242|TBC1D8B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7738647460938 2 429.774003 857.533452 NaN NaN NaN NaN NaN NaN NaN 57.865 1 57.799 57.299 58.299 -0.066036 0 0 0 0.4637 1 31502 31502 44.407 14.182 1 + 22036 19913 14925 15212 26060 26060 0.0989867913975786 IDILCYYW 8 Unmodified _IDILCYYW_ 0 0 0 TMC5|p.G707D|1|0.18|ENSG00000103534|chr16:19477469-19477469|G/A|missense_variant TMC5|p.G707D|1|0.18|ENSG00000103534|chr16:19477469-19477469|G/A|missense_variant TMC5|p.G707D|1|0.18|ENSG00000103534|chr16:19477469-19477469|G/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.3416748046875 2 544.759704 1087.50485 0.78856 0.00042958 3.5063 0.0019101 4.2948 0.0023397 544.7611381140628 100.52 0.16353 94.343 94.241 94.404 -6.1757 26 9 4 0 0 0 8.7369 1 67163 67163 19.439 9.3651 1 59757000 22037 30193 14926 15213 26061 26061 -0.035398065517028954 IDKIRGKLRRR 11 Unmodified _IDKIRGKLRRR_ 0 0 0 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9759521484375 3 470.975788 1409.90553 -0.71366 -0.00033612 -0.062495 -2.9434E-05 -0.77616 -0.00036555 471.3096428481782 103.68 0.15289 103.63 103.52 103.67 -0.047928 7 5 2 0 0 0 0.73237 1 57591 57591 1.2148 1.12 1 1856000 22038 134 14927 15214 26062 26062 0.2169769854756396 IDKRHRSAF 9 Unmodified _IDKRHRSAF_ 0 0 0 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 MSMS AL20221201_MKP_PDAC_01 4 565.3173217773438 2 565.314889 1128.61522 NaN NaN NaN NaN NaN NaN NaN 82.456 1 76.28 75.78 76.78 -6.1757 0 0 0 0.23566 1 54161 54161 18.146 0 1 + 22039 19560 14928 15215 26063 26063 0.05606174551553522 IDKVRFLEQQ 10 Unmodified _IDKVRFLEQQ_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENST00000485947.1_1_10:17271421-17272784:+|nuORF;ENSG00000026025|ENST00000544301|VIM;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;ENSG00000139648|ENST00000267119|KRT71;nc|ENSG00000186049|Q86Y46-2|KRT73;CON__Q6IME9;CON__Q3SY84;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;CON__Q9R0H5;CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;CON__Q3TTY5;ENSG00000186049|ENST00000305748|KRT73;CON__P07744;CON__Q7RTS7;ENSG00000170484|ENST00000305620|KRT74;CON__Q32MB2;ENSG00000170423|ENST00000304620|KRT78;CON__Q8N1N4-2;CON__Q7RTT2;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000135443|ENST00000257901|KRT85;CON__P78386;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1 ENSG00000167768|ENST00000252244|KRT1;CON__P05787;CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86;ENSG00000186081|ENST00000252242|KRT5;nc|ENSG00000170486|Q14CN4-3|KRT72 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2417297363281 3 425.906705 1274.69829 -0.010914 -4.6482E-06 0.7662 0.00032633 0.75529 0.00032168 425.9069412892914 38.706 0.19921 38.419 38.342 38.541 -0.28687 14 9 2 0 0 0 0.6067 1 20379 20379 9.7643 6.1716 1 4376800 + 22040 165;199;7667;177;9374;170;9329;211;151;185 14929 15216 26064 26064 0.07192446488897986 IDKVRQLLP 9 Unmodified _IDKVRQLLP_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.30615234375 2 541.340041 1080.66553 0.60436 0.00032716 0.54207 0.00029345 1.1464 0.00062061 541.3403789390788 90.371 0.1451 84.195 84.091 84.236 -6.1757 10 8 2 0 0 0 0.16418 1 59649 59649 19.257 5.3509 1 5790700 22041 5656 14930 15217 26065 26065 0.12842284156727146 IDLCEAPL 8 Unmodified _IDLCEAPL_ 0 0 0 REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B REV__nc|ENSG00000147724|Q49AJ0-3|FAM135B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2387084960938 2 437.222954 872.431355 0.4486 0.00019614 -2.3134 -0.0010115 -1.8648 -0.00081532 437.22129922608474 59.563 0.18378 59.563 59.465 59.649 0 10 7 2 0 0 0 8.7369 1 33231 33231 5.2307 0 1 424630 + 22042 20910 14931 15218 26066 26066 -0.009963549941858219 IDLDTQPVL 9 Unmodified _IDLDTQPVL_ 0 0 0 ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 ENSG00000134317|ENST00000324907|GRHL1 MSMS AL20221201_MKP_PDAC_01 4 507.2802734375 2 507.279315 1012.54408 NaN NaN NaN NaN NaN NaN NaN 65.13 1 58.955 58.455 59.455 -6.1757 0 0 0 0.50124 1 42254 42254 15.847 0.078963 1 22043 4590 14932 15219 26067 26067 0.03830617003529824 IDLDTSDHA 9 Unmodified _IDLDTSDHA_ 0 0 0 nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM;ENST00000547581.5_1_12:48529049-48539488:+|nuORF nc|ENSG00000152556|P08237-2|PFKM nc|ENSG00000152556|P08237-2|PFKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7256774902344 2 493.724904 985.435254 0.85947 0.00042434 1.8948 0.00093549 2.7542 0.0013598 493.7256812679959 72.985 0.19785 72.509 72.386 72.583 -0.47588 13 8 2 0 0 0 0.43463 1 39924 39924 10.824 0.75 1 470540 22044 6196 14933 15220 26068 26068 -0.05804593966752236 IDLECVSGFY 10 Unmodified _IDLECVSGFY_ 0 0 0 REV__nc|ENSG00000182287|P56377-2|AP1S2 REV__nc|ENSG00000182287|P56377-2|AP1S2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7903442382812 2 573.262807 1144.51106 0.86287 0.00049465 -2.2503 -0.00129 -1.3875 -0.00079539 573.2616063931354 73.964 0.27882 73.488 73.412 73.69 -0.47588 20 12 2 0 0 0 0.22811 1 40464 40464 14.838 2.3067 1 611750 + 22045 29834 14934 15221 26069 26069 -0.05541333110818414 IDLECVSGFY 10 Unmodified _IDLECVSGFY_ 0 0 0 REV__nc|ENSG00000182287|P56377-2|AP1S2 REV__nc|ENSG00000182287|P56377-2|AP1S2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 573.262807 1144.51106 1.5327 0.00087865 -3.715 -0.0021297 -2.1823 -0.001251 573.2611765109355 79.397 0.60495 73.221 72.93 73.535 -6.1757 -0.13345 -0.0012482 NaN 14.838 51 34 2 NaN NaN NaN NaN 0 NaN NaN 0 23692000 + 22046 29834 14934 15221 -0.05541333110818414 IDLHNEACY 9 Unmodified _IDLHNEACY_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7576904296875 2 539.237124 1076.45969 0.24745 0.00013343 0.075564 4.0747E-05 0.32301 0.00017418 539.2372630092636 80.191 0.2868 80.191 80.048 80.335 0 20 14 2 0 0 0 0.21473 1 44491 44491 4.3292 1.7518 1 484550 + 22047 22567 14935 15222 26070 26070 -0.0754765708488776 IDLPCGSADES 11 Unmodified _IDLPCGSADES_ 0 0 0 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1 ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.205078125 3 369.493861 1105.45975 -0.77666 -0.00028697 2.4331 0.00089901 1.6564 0.00061204 369.494608203432 28.327 0.24859 28.327 28.169 28.418 0 25 12 3 0 0 0 0.30496 1 14580 14580 1.2148 0.14337 1 2172300 22048 7378 14936 15223 26071 26071 -0.08875701875535924 IDLTISNYVA 10 Unmodified _IDLTISNYVA_ 0 0 0 REV__ENSG00000165338|ENST00000298068|HECTD2 REV__ENSG00000165338|ENST00000298068|HECTD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.8536987304688 2 554.797872 1107.58119 1.0346 0.000574 0.98919 0.0005488 2.0238 0.0011228 555.3003825564282 101.32 0.071297 95.144 95.091 95.163 -6.1757 6 3 2 0 0 0 0.21571 1 67964 67964 25.399 0 1 19679000 + 22049 22005 14937 15224 26072 26072 0.031702885492677524 IDLVRIYWFII 11 Unmodified _IDLVRIYWFII_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2867431640625 3 484.286746 1449.83841 1.0361 0.00050176 -0.16687 -8.0815E-05 0.8692 0.00042094 484.28663837241476 87.403 0.47559 81.227 80.93 81.405 -6.1757 58 25 4 0 0 0 0.71728 1 57570 57570 2.6312 0.19645 1 23261000 + 22050 19955 14938 15225 26073 26073 0.13148230493288793 IDMFLHEYNWD 11 Unmodified _IDMFLHEYNWD_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 741.8232421875 2 741.821552 1481.62855 0.077728 5.7661E-05 1.3856 0.0010279 1.4633 0.0010855 741.8230406481528 48.837 0.37579 48.465 48.278 48.654 -0.37172 65 20 4 0 0 0 0.71341 1 26267 26267 2.9952 0.26005 1 25191000 + 22051 22751 14939 15226 26074 26074 -0.09299800242024503 IDNIPPARW 9 Unmodified _IDNIPPARW_ 0 0 0 ENSG00000096070|ENST00000357641|BRPF3;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 ENSG00000096070|ENST00000357641|BRPF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2003784179688 3 361.197819 1080.57163 1.3481 0.00048695 3.2486 0.0011734 4.5968 0.0016604 361.19896565721325 39.688 0.30302 35.237 34.964 35.267 -4.4509 25 18 2 0 0 0 0.46162 1 23532 23532 9.544 1.935 1 13254000 22052 1668 14940 15227 26075 26075 0.03456565054420935 IDNNIEQISSY 11 Unmodified _IDNNIEQISSY_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.3119506835938 2 648.309332 1294.60411 -0.04616 -2.9926E-05 1.0487 0.00067987 1.0025 0.00064994 648.3102952247526 50.385 0.14828 50.385 50.308 50.456 0 11 6 2 0 0 0 0.5551 1 27800 27800 13.615 1.3742 1 2154200 + 22053 169 14941 15228 26076 26076 -0.03140737123908366 IDNPTLTVMDI 11 Unmodified _IDNPTLTVMDI_ 0 0 0 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.315185546875 2 616.315571 1230.61659 0.43624 0.00026886 0.17126 0.00010555 0.6075 0.00037441 616.3155495804828 58.511 0.21622 58.511 58.39 58.606 0 16 8 2 0 0 0 0.61059 1 32559 32559 10.8 0 1 2141000 22054 7933 14942 15229 26077 26077 0.010505830147849338 IDPEAPLLL 9 Unmodified _IDPEAPLLL_ 0 0 0 REV__ENST00000451352.3_1_17:76160326-76160446:+|nuORF REV__ENST00000451352.3_1_17:76160326-76160446:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.78759765625 2 490.786776 979.558998 0.18763 9.2087E-05 0.26018 0.00012769 0.44781 0.00021978 490.78710860641456 79.392 0.27092 79.392 79.229 79.5 0 13 10 2 0 0 0 0.49272 1 44108 44108 7.9102 0 1 213850 + 22055 27206 14943 15230 26078 26078 0.06840108871517714 IDPQVFYEL 9 Unmodified _IDPQVFYEL_ 0 0 0 ENSG00000101751|ENST00000579534|POLI ENSG00000101751|ENST00000579534|POLI ENSG00000101751|ENST00000579534|POLI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7861938476562 2 562.28714 1122.55973 0.67829 0.00038139 -0.84242 -0.00047368 -0.16413 -9.2286E-05 562.2867807395187 85.176 0.62897 84.675 84.322 84.951 -0.5015 61 40 2 0 0 0 0.54444 1 46454 46454 4.756 0.81161 1 2340900 22056 1988 14944 15231 26079 26079 0.0033490352057015116 IDPVTTDCV 9 Unmodified _IDPVTTDCV_ 0 0 0 ENSG00000214891|ENST00000617704|TRIM64C ENSG00000214891|ENST00000617704|TRIM64C ENSG00000214891|ENST00000617704|TRIM64C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.2461547851562 2 481.7286 961.442648 0.40404 0.00019464 -0.47795 -0.00023024 -0.07391 -3.5605E-05 481.7284084383342 57.918 0.47478 51.891 51.666 52.14 -6.0275 43 26 2 0 0 0 0.19613 1 37176 37176 7.9102 0 1 60707000 22057 10512 14945 15232 26080 26080 -0.03961577690699869 IDQDIGKFF 9 Unmodified _IDQDIGKFF_ 0 0 0 REV__ENSG00000183060|ENST00000684762|LYSMD4 REV__ENSG00000183060|ENST00000684762|LYSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7799072265625 2 541.779482 1081.54441 0.26514 0.00014365 -0.20401 -0.00011053 0.061127 3.3117E-05 541.7798990182605 68.468 0.31218 67.987 67.784 68.096 -0.48071 28 13 3 0 0 0 0.37804 1 37333 37333 13.508 0 1 1942100 + 22058 23316 14946 15233 26081 26081 0.0069003672338112665 IDQEEDVDFL 10 Unmodified _IDQEEDVDFL_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000449426.1_1_7:56356611-56356824:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.776123046875 2 611.777333 1221.54011 0.20489 0.00012535 -3.997 -0.0024453 -3.7921 -0.0023199 611.7750211175419 63.163 0.35209 63.163 62.985 63.338 0 28 14 3 0 0 0 0.62068 1 35202 35202 10.074 0 1 1478200 22059 9273 14947 15234 26082 26082 -0.06179517280861546 IDQKEGIPFN 10 Unmodified _IDQKEGIPFN_ 0 0 0 REV__nc|ENSG00000178950|O14976-2|GAK REV__nc|ENSG00000178950|O14976-2|GAK MSMS AL20221201_MKP_PDAC_01 4 387.5355224609375 3 387.536389 1159.58734 NaN NaN NaN NaN NaN NaN NaN 77.118 1 70.943 70.443 71.443 -6.1757 0 0 0 0.72101 1 50435 50435 15.739 2.6962 1 + 22060 23073 14948 15235 26083 26083 0.013928067808137712 IDQPPFGIF 9 Unmodified _IDQPPFGIF_ 0 0 0 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2756958007812 2 517.271293 1032.52803 -0.069564 -3.5984E-05 -0.47339 -0.00024487 -0.54295 -0.00028085 517.2708031704822 70.033 0.87128 69.554 68.997 69.869 -0.47903 127 42 5 0 0 0 0.34999 1 38116 38116 14.838 3.198 1 10505000 22061 4636 14949 15236 26084 26084 0.0130695555726561 IDQSFWETF 9 Unmodified _IDQSFWETF_ 0 0 0 ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1;ENST00000395285.3_1_20:61917669-61919222:+|nuORF;ENST00000370275.8_2_20:61917492-61919222:+|nuORF;ENST00000518618.2_1_20:61917181-61919222:+|nuORF;ENST00000468975.6_1_20:61915834-61919222:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2651977539062 2 586.766571 1171.51859 0.72689 0.00042651 -1.7649 -0.0010356 -1.038 -0.00060906 587.2664896734494 48.263 0.78555 43.03 42.496 43.282 -5.2339 121 47 4 0 0 0 0.41742 1 30180 30180 11.64 2.2572 1 54442000 22062 1931 14950 15237 26085 26085 -0.06030857518908306 IDQTCCRS 8 Unmodified _IDQTCCRS_ 0 0 0 REV__ENSG00000186204|ENST00000550308|CYP4F12 REV__ENSG00000186204|ENST00000550308|CYP4F12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2651977539062 2 463.196945 924.379336 -0.038201 -1.7694E-05 -3.5043 -0.0016232 -3.5425 -0.0016409 463.1952831415385 34.658 0.17332 34.658 34.579 34.753 0 11 8 2 0 0 0 8.7369 1 18231 18231 4.756 0 1 773280 + 22063 23560 14951 15238 26086 26086 -0.08587841679570829 IDQWQALLV 9 Unmodified _IDQWQALLV_ 0 0 0 REV__ENSG00000189045|ENST00000601380|ANKDD1B REV__ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.806884765625 2 543.303124 1084.5917 0.32067 0.00017422 -0.95933 -0.00052121 -0.63866 -0.00034699 543.3014040381588 39.349 0.39231 39.349 39.077 39.469 0 44 18 3 0 0 0 0.39863 1 21001 21001 12.532 0.89125 1 5240700 + 22064 23754 14952 15239 26087 26087 0.05278315994382865 IDQYHRWWFRK 11 Unmodified _IDQYHRWWFRK_ 0 0 0 REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 818.19677734375 2 817.920584 1633.82661 NaN NaN NaN NaN NaN NaN NaN 88.947 1 88.995 88.495 89.495 0.047852 0 0 0 0.94165 1 49484 49484 1.3295 1.0225 1 + 22065 25791 14953 15240 26088 26088 0.03505426522610833 IDREVFAHQI 10 Unmodified _IDREVFAHQI_ 0 0 0 REV__MAST1|p.Q418H|1|0.05|ENSG00000105613|chr19:12858627-12858627|G/C|missense_variant REV__MAST1|p.Q418H|1|0.05|ENSG00000105613|chr19:12858627-12858627|G/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3303833007812 2 614.327662 1226.64077 0.42307 0.00025991 0.018673 1.1471E-05 0.44175 0.00027138 614.3279043819302 58.413 0.35656 58.413 58.154 58.511 0 31 13 3 0 0 0 0.46077 1 32470 32470 18.373 1.2602 1 2606700 + 22066 29458 14954 15241 26089 26089 0.036516042833454776 IDRGSFLTL 9 Unmodified _IDRGSFLTL_ 0 0 0 REV__ENSG00000176903|ENST00000316836|PNMA1 REV__ENSG00000176903|ENST00000316836|PNMA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2551879882812 2 511.287474 1020.5604 NaN NaN NaN NaN NaN NaN NaN 56.809 1 56.741 56.241 57.241 -0.068737 0 0 0 0.53226 1 30911 30911 14.838 0 1 + 22067 22947 14955 15242 26090 26090 0.05093742960275449 IDRILVNI 8 Unmodified _IDRILVNI_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.3006591796875 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 24.07 1 24.091 23.591 24.591 0.021185 0 0 0 0.96606 1 12410 12410 7.2892 0 1 + 22068 20357 14956 15243 26091 26091 0.10710637202578255 IDRLVRVAD 9 Unmodified _IDRLVRVAD_ 0 0 0 REV__ENSG00000004975|ENST00000005340|DVL2 REV__ENSG00000004975|ENST00000005340|DVL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.87744140625 3 352.876857 1055.60874 -0.18525 -6.5371E-05 1.2757 0.00045018 1.0905 0.00038481 352.8773394233167 37.654 0.37743 37.671 37.416 37.793 0.01704 31 18 3 0 0 0 0.45045 1 19980 19980 6.6304 0 1 5469300 + 22069 16958 14957 15244 26092 26092 0.08316236600194316 IDRLVRVAD 9 Unmodified _IDRLVRVAD_ 0 0 0 REV__ENSG00000004975|ENST00000005340|DVL2 REV__ENSG00000004975|ENST00000005340|DVL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 352.876857 1055.60874 -0.0008662 -3.0566E-07 2.0073 0.00070834 2.0065 0.00070804 352.87804694058065 38.027 0.1221 37.755 37.66 37.782 -0.27133 0.041912 0.00075128 NaN 6.6304 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 882660 + 22070 16958 14957 15244 0.08316236600194316 IDRLVRVAD 9 Unmodified _IDRLVRVAD_ 0 0 0 REV__ENSG00000004975|ENST00000005340|DVL2 REV__ENSG00000004975|ENST00000005340|DVL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.876857 1055.60874 -0.18525 -6.5371E-05 1.2757 0.00045018 1.0905 0.00038481 352.8773394233167 37.654 0.37743 37.671 37.416 37.793 0.01704 -0.041912 -2.3212E-05 NaN 6.6304 31 18 3 NaN NaN NaN NaN 0 NaN NaN 0 5469300 + 22071 16958 14957 15244 0.08316236600194316 IDRSNDNFNSF 11 Unmodified _IDRSNDNFNSF_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.5343017578125 3 443.533707 1327.57929 0.7803 0.00034609 0.014544 6.4506E-06 0.79484 0.00035254 443.5336953741329 47.619 0.19202 47.619 47.494 47.686 0 21 8 3 0 0 0 0.71036 1 26080 26080 1.3296 0.63198 1 2040400 + 22072 24007 14958 15245 26093 26093 -0.07139372206620465 IDRVEQEWF 9 Unmodified _IDRVEQEWF_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2982788085938 2 611.29857 1220.58259 -0.18974 -0.00011599 0.64293 0.00039302 0.45319 0.00027703 611.2992211741253 76.983 0.17543 76.503 76.365 76.54 -0.47945 13 7 2 0 0 0 0.55144 1 42137 42137 4.3292 0 1 392120 + 22073 18113 14959 15246 26094 26094 -0.018880773619457614 IDSEVVHRLSL 11 Unmodified _IDSEVVHRLSL_ 0 0 0 REV__CON__O76009 REV__CON__O76009 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2387390136719 3 423.238343 1266.6932 -0.071949 -3.0451E-05 0.98772 0.00041804 0.91577 0.00038759 423.23873419995306 30.253 0.42961 30.283 30.047 30.477 0.030104 42 18 4 0 0 0 0.66968 1 15775 15775 3.5927 0.52041 1 3622300 + + 22074 16832 14960 15247 26095 26095 0.07052142626298519 IDSHIKAV 8 Unmodified _IDSHIKAV_ 0 0 0 REV__nc|ENSG00000100504|P06737-2|PYGL REV__nc|ENSG00000100504|P06737-2|PYGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.0078430175781 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 16.988 1 16.993 16.493 17.493 0.0050564 0 0 0 0.97444 1 8547 8547 2.5775 0 1 + 22075 18076 14961 15248 26096 26096 0.05157802243036258 IDSLIEHMI 9 Unmodified _IDSLIEHMI_ 0 0 0 nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1 nc|ENSG00000271271|P0DTE5-2|UGT2A2 nc|ENSG00000271271|P0DTE5-2|UGT2A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.781982421875 2 535.781167 1069.54778 NaN NaN NaN NaN NaN NaN NaN 39.166 1 39.177 38.677 39.677 0.011452 0 0 0 0.43505 1 20853 20853 18.135 0 1 22076 10884 14962 15249 26097 26097 0.015789635057444684 IDSLSVVGL 9 Unmodified _IDSLSVVGL_ 0 0 0 REV__ENSG00000115592|ENST00000439262|PRKAG3 REV__ENSG00000115592|ENST00000439262|PRKAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.5200805664062 1 902.519325 901.512048 0.055334 4.994E-05 0.35413 0.00031961 0.40946 0.00036955 902.519916214156 89.157 0.27355 89.157 89.032 89.306 0 22 12 2 0 0 0 0.052168 1 49385 49385 44.407 2.3125 1 1024300 + 22077 18994 14963 15250 26098 26098 0.057352493203779886 IDSLSVVGL 9 Unmodified _IDSLSVVGL_ 0 0 0 REV__ENSG00000115592|ENST00000439262|PRKAG3 REV__ENSG00000115592|ENST00000439262|PRKAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7641906738281 2 451.7633 901.512048 0.43297 0.0001956 0.37835 0.00017093 0.81132 0.00036653 451.7633871166453 99.752 0.1132 93.576 93.525 93.638 -6.1757 14 7 2 0 0 0 0.013472 1 66564 66564 70.716 10.326 1 28197000 + 22078 18994 14963 15250 26099 26099 0.057352493203779886 IDSLYEEQSQQ 11 Unmodified _IDSLYEEQSQQ_ 0 0 0 REV__ENSG00000165392|ENST00000298139|WRN REV__ENSG00000165392|ENST00000298139|WRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.3025512695312 2 670.304246 1338.59394 -0.75089 -0.00050332 0.29158 0.00019544 -0.45931 -0.00030788 670.3044186274298 33.092 0.43809 33.092 32.889 33.327 0 73 21 4 0 0 0 0.46131 2 17264 17264;17369 18.373 9.6277 1 18208000 + 22079 22008 14964 15251 26100;26101 26100 -0.06181344849119341 IDSLYEEQSQQ 11 Unmodified _IDSLYEEQSQQ_ 0 0 0 REV__ENSG00000165392|ENST00000298139|WRN REV__ENSG00000165392|ENST00000298139|WRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3036499023438 2 670.304246 1338.59394 -0.25283 -0.00016947 1.0745 0.00072027 0.82171 0.0005508 670.3049563149013 33.161 0.559 33.002 32.81 33.369 -0.15919 73 22 4 0 0 0 0.44182 2 17247 17247;17339 19.362 6.3195 1 34752000 + 22080 22008 14964 15251 26102;26103 26102 -0.06181344849119341 IDSLYEEQSQQ 11 Unmodified _IDSLYEEQSQQ_ 0 0 0 REV__ENSG00000165392|ENST00000298139|WRN REV__ENSG00000165392|ENST00000298139|WRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 670.304246 1338.59394 -0.75089 -0.00050332 0.29158 0.00019544 -0.45931 -0.00030788 670.3044186274298 33.092 0.43809 33.092 32.889 33.327 0 0.055787 -0.00056708 NaN 19.362 73 21 4 NaN NaN NaN NaN 0 NaN NaN 0 18208000 + 22081 22008 14964 15251 -0.06181344849119341 IDSPSGFLYS 10 Unmodified _IDSPSGFLYS_ 0 0 0 REV__nc|ENSG00000051341|O75417-2|POLQ REV__nc|ENSG00000051341|O75417-2|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2613525390625 2 543.261122 1084.50769 0.21664 0.00011769 0.73917 0.00040156 0.9558 0.00051925 543.2613905799485 93.672 0.42806 93.672 93.473 93.901 0 68 27 3 0 0 0 0.44373 1 51802 51802 19.257 0 1 4321300 + 22082 17266 14965 15252 26104 26104 -0.03118259893199138 IDTAKLYPI 9 Unmodified _IDTAKLYPI_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.3009033203125 2 517.30005 1032.58555 0.62343 0.0003225 0.25932 0.00013415 0.88276 0.00045665 517.300289906824 60.696 0.34838 60.696 60.514 60.863 0 35 14 3 0 0 0 0.08691 1 33897 33897 36.127 2.0246 1 3562700 22083 10905 14966 15253 26105 26105 0.07055797762859584 IDTAKLYPI 9 Unmodified _IDTAKLYPI_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.300537109375 2 517.30005 1032.58555 0.5042 0.00026082 1.6142 0.00083501 2.1184 0.0010958 517.300522138923 66.657 0.55683 60.481 60.315 60.872 -6.1757 44 31 2 0 0 0 0.05447 1 43552 43552 43.858 2.0187 1 21596000 22084 10905 14966 15253 26106 26106 0.07055797762859584 IDVDVQPTY 9 Unmodified _IDVDVQPTY_ 0 0 0 ENSG00000129295|ENST00000620350|DNAAF11;nc|ENSG00000129295|Q86X45-2|DNAAF11 ENSG00000129295|ENST00000620350|DNAAF11 ENSG00000129295|ENST00000620350|DNAAF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7582397460938 2 525.261122 1048.50769 0.071037 3.7313E-05 1.2452 0.00065403 1.3162 0.00069135 525.26237119058 29.378 0.22937 29.378 29.202 29.432 0 25 10 3 0 0 0 0.30562 1 15175 15175 16.942 3.0362 1 2539000 22085 4128 14967 15254 26107 26107 -0.01462259893173723 IDVHMFPQT 9 Unmodified _IDVHMFPQT_ 0 0 0 ENST00000425384.6_1_6:3183394-3183592:-|nuORF ENST00000425384.6_1_6:3183394-3183592:-|nuORF ENST00000425384.6_1_6:3183394-3183592:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.1806030273438 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 63.487 1 57.311 56.811 57.811 -6.1757 0 0 0 0.83049 1 41050 41050 2.2828 0.5405 1 22086 13162 14968 15255 26108 26108 -0.022981898084935892 IDVQQQKAP 9 Unmodified _IDVQQQKAP_ 0 0 0 REV__ENSG00000159217|ENST00000290341|IGF2BP1 REV__ENSG00000159217|ENST00000290341|IGF2BP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1027.057861328125 1 1026.55784 1025.55056 0.83187 0.00085396 0.86837 0.00089143 1.7002 0.0017454 1026.5614217452137 49.296 0.20522 49.252 49.07 49.275 -0.04369 13 9 2 0 0 0 0.21798 1 26533 26533 2.3027 0 1 682270 + 22087 21470 14969 15256 26109 26109 0.03880554954912441 IDVQQQKAP 9 Unmodified _IDVQQQKAP_ 0 0 0 REV__ENSG00000159217|ENST00000290341|IGF2BP1 REV__ENSG00000159217|ENST00000290341|IGF2BP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1026.8896484375 1 1026.55784 1025.55056 1.2718 0.0013055 1.669 0.0017133 2.9407 0.0030188 1026.5626385421804 46.316 0.22795 46.283 46.224 46.452 -0.033417 13 10 2 0 0 0 0.21798 1 25004 25004 2.3027 0 1 3190100 + 22088 21470 14969 15256 26110 26110 0.03880554954912441 IDVQQQKAP 9 Unmodified _IDVQQQKAP_ 0 0 0 REV__ENSG00000159217|ENST00000290341|IGF2BP1 REV__ENSG00000159217|ENST00000290341|IGF2BP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1026.55784 1025.55056 0.92833 0.00095299 -1.3662 -0.0014025 -0.43787 -0.0004495 1026.5568433155506 55.094 0.2233 49.173 49.143 49.366 -5.9211 -0.039669 -0.00064489 NaN 2.3027 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 21056000 + 22089 21470 14969 15256 0.03880554954912441 IDVRWFPF 8 Unmodified _IDVRWFPF_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;ENSG00000166664|ENST00000299847|CHRFAM7A;nc|ENSG00000175344|P36544-2|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3074951171875 2 540.287277 1078.56 0.35301 0.00019073 -3.6361 -0.0019645 -3.283 -0.0017738 540.7871832609595 71.537 0.23511 71.06 70.884 71.12 -0.47729 11 9 2 0 0 0 8.7369 1 39093 39093 5.2307 0.47466 1 308030 22090 8512 14970 15257 26111 26111 0.023863680310796553 IDVSLCMFLLI 11 Unmodified _IDVSLCMFLLI_ 0 0 0 REV__ENST00000578794.1_1_17:56082382-56082478:-|nuORF REV__ENST00000578794.1_1_17:56082382-56082478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2337951660156 3 422.899394 1265.67635 1.2137 0.00051328 -0.33388 -0.0001412 0.87984 0.00037208 422.89918248732295 46.894 0.28305 46.86 46.693 46.976 -0.033417 46 13 4 0 0 0 0.37677 1 25206 25206 17.863 0 1 37991000 + 22091 29047 14971 15258 26112 26112 0.0541418242448799 IDVVPPNV 8 Unmodified _IDVVPPNV_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4818115234375 1 852.482545 851.475269 0.03876 3.3042E-05 -0.61859 -0.00052734 -0.57983 -0.0004943 852.4818853525752 76.971 0.55704 76.971 76.708 77.265 0 102 33 4 0 0 0 0.23628 2 42776 42776;42879 64.236 13.381 1 47981000 22092 270 14972 15259 26113;26114 26113 0.0435899749447799 IDVVPPNV 8 Unmodified _IDVVPPNV_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.4820556640625 1 852.482545 851.475269 -1.1797 -0.0010056 0.79675 0.00067922 -0.38292 -0.00032643 852.4831722286257 77.487 0.48504 77.005 76.784 77.269 -0.4826 58 22 3 0 0 0 0.31612 1 42441 42441 53.576 2.7205 1 28113000 22093 270 14972 15259 26115 26115 0.0435899749447799 IDVVPPNV 8 Unmodified _IDVVPPNV_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 852.4826049804688 1 852.482545 851.475269 0.34634 0.00029525 0.68808 0.00058658 1.0344 0.00088182 852.4830100429832 77.039 0.33582 77.089 76.91 77.246 0.05011 21 13 2 0 0 0 0.3408 1 42489 42489 50.855 0 1 2811900 22094 270 14972 15259 26116 26116 0.0435899749447799 IDVVPPNV 8 Unmodified _IDVVPPNV_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-14|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;nc|ENSG00000003402|O15519-11|CFLAR;nc|ENSG00000003402|O15519-13|CFLAR;nc|ENSG00000003402|O15519-2|CFLAR;nc|ENSG00000003402|O15519-9|CFLAR;nc|ENSG00000003402|O15519-12|CFLAR;nc|ENSG00000003402|O15519-10|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 852.4842529296875 1 852.482545 851.475269 0.48067 0.00040976 0.16006 0.00013644 0.64072 0.00054621 852.482628101438 85.698 0.67925 79.522 79.21 79.889 -6.1757 102 38 4 0 0 0 0.21583 3 56677 56422;56547;56677 67.344 3.8468 1 222790000 22095 270 14972 15259 26117;26118;26119 26119 0.0435899749447799 IDWSVKPTHTF 11 Unmodified _IDWSVKPTHTF_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.3458862304688 2 665.843145 1329.67174 0.68494 0.00045606 -0.18546 -0.00012348 0.49948 0.00033258 665.8425981283725 87.381 0.6005 81.205 80.911 81.512 -6.1757 77 32 3 0 0 0 0.48742 1 57578 57578 21.537 9.2963 1 33623000 22096 4625 14973 15260 26120 26120 0.020087575975594518 IDYIWFSNR 9 Unmodified _IDYIWFSNR_ 0 0 0 REV__nc|ENSG00000128585|Q9UL63-2|MKLN1 REV__nc|ENSG00000128585|Q9UL63-2|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.3026733398438 2 607.303655 1212.59276 -0.6498 -0.00039463 -0.19433 -0.00011802 -0.84413 -0.00051265 607.3033196583713 41.252 0.24824 41.252 41.137 41.385 0 28 11 3 0 0 0 0.094149 1 22235 22235 34.402 5.3201 1 6377000 + 22097 19618 14974 15261 26121 26121 -0.005034696367374636 IDYIWFSNR 9 Unmodified _IDYIWFSNR_ 0 0 0 REV__nc|ENSG00000128585|Q9UL63-2|MKLN1 REV__nc|ENSG00000128585|Q9UL63-2|MKLN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 607.303655 1212.59276 -0.26932 -0.00016356 -1.7109 -0.0010391 -1.9803 -0.0012026 607.3025948681462 41.607 0.14432 41.3 41.188 41.333 -0.30682 0.024339 -0.00148 NaN 34.402 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 16762000 + 22098 19618 14974 15261 -0.005034696367374636 IDYRARVL 8 Unmodified _IDYRARVL_ 0 0 0 ENST00000534639.1_1_11:43284362-43284860:-|nuORF ENST00000534639.1_1_11:43284362-43284860:-|nuORF ENST00000534639.1_1_11:43284362-43284860:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.2969665527344 2 503.295633 1004.57671 NaN NaN NaN NaN NaN NaN NaN 99.193 1 93.017 92.517 93.517 -6.1757 0 0 0 0.83301 1 65983 65983 21.747 1.293 1 22099 14956 14975 15262 26122 26122 0.07460868917041807 IEAIEKQTY 9 Unmodified _IEAIEKQTY_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7357177734375 2 547.790047 1093.56554 0.38624 0.00021158 0.041078 2.2502E-05 0.42732 0.00023408 547.789706253087 56.842 0.20058 56.842 56.746 56.947 0 13 8 2 0 0 0 0.17718 1 31605 31605 14.838 5.4908 1 1783600 + 22100 22981 14976 15263 26123 26123 0.02250002032269549 IEAMNGQYL 9 Unmodified _IEAMNGQYL_ 0 0 0 ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2848510742188 2 519.749867 1037.48518 0.17585 9.1398E-05 -2.7212 -0.0014143 -2.5453 -0.0013229 519.7483795050864 42.058 0.33516 42.058 41.864 42.199 0 24 17 2 0 0 0 0.16785 1 22783 22783 16.942 0 1 3168400 22101 5498 14977 15264 26124 26124 -0.03206182562462345 IEANEVYIL 9 Unmodified _IEANEVYIL_ 0 0 0 REV__ENST00000320230.9_1_11:791329-791734:-|nuORF REV__ENST00000320230.9_1_11:791329-791734:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2872314453125 2 532.28714 1062.55973 NaN NaN NaN NaN NaN NaN NaN 88.287 1 88.287 87.787 88.787 0 0 0 0 0.83049 1 48871 48871 3.9444 0 1 + 22102 25498 14978 15265 26125 26125 0.030949035205594555 IEAPPSLY 8 Unmodified _IEAPPSLY_ 0 0 0 nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.4662475585938 1 889.466561 888.459284 -0.53431 -0.00047525 1.0511 0.00093492 0.51679 0.00045967 889.4674013925109 93.251 0.81514 87.076 86.671 87.486 -6.1757 99 56 2 0 0 0 0.21583 1 61913 61913 67.344 3.781 1 34090000 22103 10476 14979 15266 26126 26126 0.010592912575589253 IEATSPMPE 9 Unmodified _IEATSPMPE_ 0 0 0 REV__nc|ENSG00000018236|Q12860-3|CNTN1 REV__nc|ENSG00000018236|Q12860-3|CNTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7275390625 2 487.7286 973.442648 0.17931 8.7453E-05 1.7894 0.00087275 1.9687 0.00096021 487.72922420786415 41.287 0.20407 40.984 40.863 41.067 -0.30304 26 9 3 0 0 0 0.41742 1 21841 21841 11.64 0.52583 1 10853000 + 22104 17094 14980 15267 26127 26127 -0.045135776906931824 IEATVIAL 8 Unmodified _IEATVIAL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MSMS AL20221201_MKP_PDAC_01 4 415.25390625 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 63.81 1 57.634 57.134 58.134 -6.1757 0 0 0 0.93066 1 41287 41287 14.582 0 1 22105 16480 14981 15268 26128 26128 0.07456168154271836 IEAYNGDMDF 10 Unmodified _IEAYNGDMDF_ 0 0 0 ENST00000450418.1_1_3:4024244-4024472:-|nuORF ENST00000450418.1_1_3:4024244-4024472:-|nuORF ENST00000450418.1_1_3:4024244-4024472:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.737060546875 2 587.739696 1173.46484 NaN NaN NaN NaN NaN NaN NaN 70.357 1 69.878 69.378 70.378 -0.47903 0 0 0 0.96981 1 38477 38477 3.9444 0 1 22106 13510 14982 15269 26129 26129 -0.11495398012925762 IECINREYR 9 Unmodified _IECINREYR_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2013549804688 3 399.201124 1194.58154 -0.51691 -0.00020635 -0.045133 -1.8017E-05 -0.56204 -0.00022437 399.2011855542492 19.655 0.27416 19.655 19.541 19.815 0 136 42 4 0 0 0 0.20428 1 9803 9803 16.566 3.6933 1 14768000 + 22107 23690 14983 15270 26130 26130 -0.00796615002514045 IECINREYR 9 Unmodified _IECINREYR_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.201124 1194.58154 -0.45467 -0.0001815 -0.2045 -8.1638E-05 -0.65917 -0.00026314 399.20116881721543 19.53 0.30934 19.558 19.447 19.756 0.028355 -0.046267 -0.00020436 NaN 16.566 102 30 5 NaN NaN NaN NaN 0 NaN NaN 0 15002000 + 22108 23690 14983 15270 -0.00796615002514045 IECINREYR 9 Unmodified _IECINREYR_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 399.201124 1194.58154 -0.064511 -2.5753E-05 0.8022 0.00032024 0.73769 0.00029449 399.20168469573406 19.593 0.15503 19.601 19.558 19.713 0.0078487 -0.0039183 0.0010013 NaN 16.566 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1434400 + 22109 23690 14983 15270 -0.00796615002514045 IECQELLDLI 10 Unmodified _IECQELLDLI_ 0 0 0 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.876953125 3 396.877535 1187.61078 0.31903 0.00012662 -0.68784 -0.00027299 -0.36881 -0.00014637 396.8773584535256 2.1183 0.12767 -0.36366 -0.46761 -0.33993 -2.482 72 54 2 0 0 0 0.69126 1 1091 1091 3.8763 0.80407 1 2638500 + 22110 20282 14984 15271 26131 26131 0.024474845031363657 IECQELLDLI 10 Unmodified _IECQELLDLI_ 0 0 0 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8771667480469 3 396.877535 1187.61078 0.3187 0.00012648 -1.2227 -0.00048528 -0.90405 -0.0003588 396.87705567192637 2.2944 0.059268 -0.18755 -0.20472 -0.14546 -2.482 47 25 2 0 0 0 0.69126 1 1175 1175 3.8763 0.80407 1 2967000 + 22111 20282 14984 15271 26132 26132 0.024474845031363657 IECQKVNG 8 Unmodified _IECQKVNG_ 0 0 0 REV__ENST00000278882.8_1_20:29623179-29633907:+|nuORF REV__ENST00000278882.8_1_20:29623179-29633907:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 890.44091796875 1 890.440028 889.432752 -1.0214 -0.0009095 2.0368 0.0018136 1.0154 0.00090413 890.4410103093045 78.386 0.12839 77.9 77.799 77.928 -0.48596 9 5 2 0 0 0 0.64853 1 42920 42920 21.747 0 1 1143000 + 22112 18662 14985 15272 26133 26133 -0.01638720905395985 IECSAKYSFH 10 Unmodified _IECSAKYSFH_ 0 0 0 REV__ENSG00000104960|ENST00000391842|PTOV1 REV__ENSG00000104960|ENST00000391842|PTOV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5189819335938 3 395.518341 1183.53319 0.65051 0.00025729 0.95522 0.00037781 1.6057 0.0006351 395.5188090342676 70.506 0.33969 70.541 70.358 70.698 0.035515 36 15 3 0 0 0 0.67459 1 38811 38811 3.0723 0 1 3830800 + 22113 18393 14986 15273 26134 26134 -0.05123108642419538 IECSEVAGAP 10 Unmodified _IECSEVAGAP_ 0 0 0 REV__nc|ENSG00000165494|O94913|PCF11 REV__nc|ENSG00000165494|O94913|PCF11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.7295227050781 2 488.226225 974.437897 0.76756 0.00037474 -2.5545 -0.0012472 -1.7869 -0.00087242 488.2253641759916 45.663 0.2949 40.708 40.641 40.936 -4.9549 34 19 3 0 0 0 0.22149 1 28114 28114 20.454 5.6154 1 15839000 + 22114 22014 14987 15274 26135 26135 -0.05034461833452042 IECWSEWDL 9 Unmodified _IECWSEWDL_ 0 0 0 REV__nc|ENSG00000189164|Q8NB42-2|ZNF527 REV__nc|ENSG00000189164|Q8NB42-2|ZNF527 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7796630859375 2 590.752607 1179.49066 NaN NaN NaN NaN NaN NaN NaN 54.202 1 54.202 53.702 54.702 0 0 0 0 0.84564 1 30079 30079 2.0598 0.21551 1 + 22115 29870 14988 15275 26136 26136 -0.09190503770651048 IEDDSEEES 9 Unmodified _IEDDSEEES_ 0 0 0 REV__ENSG00000163811|ENST00000407426|WDR43 REV__ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.6983642578125 2 526.698748 1051.38294 0.3704 0.00019509 -0.03781 -1.9915E-05 0.33259 0.00017517 526.6986613982675 64.74 0.32177 64.74 64.614 64.936 0 35 14 3 0 0 0 0.55144 1 36112 36112 4.3292 1.44 1 3505500 + 22116 21817 14989 15276 26137 26137 -0.14069221891031702 IEDLTRSVW 9 Unmodified _IEDLTRSVW_ 0 0 0 ENST00000482885.1_1_3:159606497-159610040:+|nuORF ENST00000482885.1_1_3:159606497-159610040:+|nuORF ENST00000482885.1_1_3:159606497-159610040:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7932739257812 2 559.795663 1117.57677 0.45462 0.00025449 -0.9198 -0.0005149 -0.46518 -0.00026041 559.7949100189662 61.416 0.66319 61.416 60.999 61.663 0 66 29 3 0 0 0 0.19127 1 34294 34294 24.021 1.2843 1 1961400 22117 14117 14990 15277 26138 26138 0.022688241263722375 IEDTVFHVF 9 Unmodified _IEDTVFHVF_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.83203125 2 553.779482 1105.54441 0.43655 0.00024175 1.3305 0.0007368 1.7671 0.00097856 553.7793579617393 58.354 0.24628 57.863 57.759 58.005 -0.49079 17 11 2 0 0 0 0.19613 1 31677 31677 7.9102 0 1 1924300 22118 1366 14991 15278 26139 26139 -0.004139632766282375 IEDTVFHVF 9 Unmodified _IEDTVFHVF_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 553.779482 1105.54441 0.68349 0.0003785 1.6007 0.00088646 2.2842 0.001265 553.7802375183659 57.938 0.36176 57.938 57.716 58.078 0 0.037322 4.1741E-05 NaN 7.9102 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1516400 22119 1366 14991 15278 -0.004139632766282375 IEDYFPEF 8 Unmodified _IEDYFPEF_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2378540039062 2 530.237116 1058.45968 0.36763 0.00019493 0.15018 7.9631E-05 0.51781 0.00027456 530.2372416812893 76.576 0.31495 76.576 76.419 76.734 0 19 12 2 0 0 0 0.80232 1 42535 42535 5.2307 0 1 448460 22120 16063;14003 14992 15279 26140 26140 -0.06721333813220554 IEEDSMVDYYR 11 Unmodified _IEEDSMVDYYR_ 0 0 0 REV__ENSG00000072682|ENST00000360568|P4HA2 REV__ENSG00000072682|ENST00000360568|P4HA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.8783264160156 3 473.874742 1418.6024 0.20519 9.7236E-05 1.2257 0.00058082 1.4309 0.00067805 473.8753018261248 45.79 0.32175 45.466 45.337 45.659 -0.32425 68 18 5 0 0 0 0.69509 1 24511 24511 4.7159 1.1289 1 103800000 + 22121 17520 14993 15280 26141 26141 -0.09016114204155201 IEEEDRALL 9 Unmodified _IEEEDRALL_ 0 0 0 ENSG00000073711|ENST00000264977|PPP2R3A ENSG00000073711|ENST00000264977|PPP2R3A ENSG00000073711|ENST00000264977|PPP2R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.288330078125 2 544.285128 1086.5557 0.13299 7.2386E-05 0.59107 0.00032171 0.72406 0.0003941 544.2876410919142 97.176 0.48816 96.933 96.706 97.194 -0.24277 50 21 3 0 0 0 0.32871 1 53098 53098 15.847 0 1 1373800 22122 1111 14994 15281 26142 26142 0.015888140268771167 IEEEEEEGF 9 Unmodified _IEEEEEEGF_ 0 0 0 REV__ENSG00000114857|ENST00000232978|NKTR REV__ENSG00000114857|ENST00000232978|NKTR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.725341796875 2 555.727309 1109.44006 NaN NaN NaN NaN NaN NaN NaN 52.756 1 52.756 52.256 53.256 0 0 0 0 0.6032 1 29207 29207 12.532 0.89125 1 + 22123 18937 14995 15282 26143 26143 -0.1102775461465626 IEEELISHY 9 Unmodified _IEEELISHY_ 0 0 0 REV__ENST00000457041.5_1_13:49957026-49975572:-|nuORF REV__ENST00000457041.5_1_13:49957026-49975572:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7823486328125 2 566.779679 1131.5448 0.31324 0.00017754 2.9436 0.0016684 3.2569 0.0018459 566.7813881884659 85.907 0.29652 85.907 85.768 86.064 0 28 12 3 0 0 0 0.58865 1 47678 47678 2.0598 0 1 759890 + 22124 27262 14996 15283 26144 26144 -0.01570588347408375 IEEFCKSLGHA 11 Unmodified _IEEFCKSLGHA_ 0 0 0 ENST00000497293.1_1_3:111697881-111700815:+|nuORF;nc|ENSG00000144827|Q9NUJ1-3|ABHD10;ENSG00000144827|ENST00000273359|ABHD10 ENST00000497293.1_1_3:111697881-111700815:+|nuORF ENST00000497293.1_1_3:111697881-111700815:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 617.3002319335938 2 617.300255 1232.58596 NaN NaN NaN NaN NaN NaN NaN 69.418 1 63.242 62.742 63.742 -6.1757 0 0 0 0.42926 1 45341 45341 27.223 6.7696 1 22125 5649 14997 15284 26145 26145 -0.021031505795917838 IEEFKEAFML 10 Unmodified _IEEFKEAFML_ 0 0 0 ENSG00000160808|ENST00000292327|MYL3 ENSG00000160808|ENST00000292327|MYL3 ENSG00000160808|ENST00000292327|MYL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.546875 3 419.545897 1255.61586 NaN NaN NaN NaN NaN NaN NaN 28.44 1 28.44 27.94 28.94 0 0 0 0 0.98857 1 14690 14690 1.9064 1.1298 1 22126 6758 14998 15285 26146 26146 -0.0017221163425347186 IEEHFVTNK 9 Unmodified _IEEHFVTNK_ 0 0 0 REV__ENST00000545912.1_1_11:95432313-95433683:+|nuORF REV__ENST00000545912.1_1_11:95432313-95433683:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8699951171875 3 372.860984 1115.56112 1.5631 0.00058281 0.871 0.00032476 2.4341 0.00090757 372.8611059001223 19.49 0.54782 16.833 16.495 17.043 -2.6564 155 46 5 0 0 0 0.57331 1 10148 10148 2.9952 2.9952 1 151460000 + 22127 28653 14999 15286 26147 26147 0.007965376093352461 IEEHRQRSLDS 11 Unmodified _IEEHRQRSLDS_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3450927734375 2 685.344572 1368.67459 -0.019056 -1.306E-05 0.90118 0.00061762 0.88213 0.00060456 685.3452835305708 85.836 0.37094 85.836 85.581 85.952 0 36 15 3 0 0 0 0.71341 1 47562 47562 2.9952 0 1 531300 22128 359 15000 15287 26148 26148 0.004999809844321135 IEEKTMKTI 9 Unmodified _IEEKTMKTI_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3026123046875 2 546.8021 1091.58965 0.31346 0.0001714 1.5454 0.00084505 1.8589 0.0010165 547.3035215882127 67.269 0.31245 66.787 66.695 67.007 -0.48219 38 13 4 0 0 0 0.19891 1 36764 36764 11.64 0 1 2309600 + 22129 21725 15001 15288 26149 26149 0.04751519194269349 IEELYAFMPA 10 Unmodified _IEELYAFMPA_ 0 0 0 nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2869262695312 2 592.288825 1182.5631 0.42127 0.00024951 -2.3473 -0.0013903 -1.9261 -0.0011408 592.2875995452064 63.154 0.10704 62.667 62.622 62.729 -0.48617 6 4 2 0 0 0 0.6606 1 34455 34455 7.2892 0.56607 1 818250 22130 8385 15002 15289 26150 26150 -0.020881696970491248 IEELYAFMPA 10 Unmodified _IEELYAFMPA_ 0 0 0 nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 592.288825 1182.5631 0.17957 0.00010636 -2.747 -0.001627 -2.5674 -0.0015207 592.2869995374845 62.773 0.22879 62.751 62.622 62.851 -0.021614 0.041938 -5.5133E-05 NaN 7.2892 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2193700 22131 8385 15002 15289 -0.020881696970491248 IEEMLWETE 9 Unmodified _IEEMLWETE_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2672119140625 2 590.265547 1178.51654 0.21044 0.00012422 1.4064 0.00083014 1.6168 0.00095436 590.266093615698 68.915 0.31818 68.434 68.309 68.627 -0.48071 33 13 3 0 0 0 0.49272 1 37650 37650 7.9102 1.187 1 5356100 + 22132 23892 15003 15290 26151 26151 -0.06557654319021822 IEEMLWETE 9 Unmodified _IEEMLWETE_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 590.265547 1178.51654 0.53378 0.00031507 1.4491 0.00085535 1.9829 0.0011704 590.2663222363922 68.444 0.2048 68.469 68.357 68.562 0.025146 0.017435 4.1184E-05 NaN 7.9102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1766300 + 22133 23892 15003 15290 -0.06557654319021822 IEERFPFGN 9 Unmodified _IEERFPFGN_ 0 0 0 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2853393554688 2 554.774731 1107.53491 0.50407 0.00027964 0.058931 3.2693E-05 0.563 0.00031234 554.7744374187783 54.081 0.41572 53.614 53.368 53.784 -0.46664 49 20 3 0 0 0 0.30562 1 29192 29192 16.942 4.4107 1 30649000 + 22134 21499 15004 15291 26152 26152 -0.014557315621232192 IEERKEMNE 9 Unmodified _IEERKEMNE_ 0 0 0 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.1898803710938 3 393.188772 1176.54449 NaN NaN NaN NaN NaN NaN NaN 68.083 1 68.083 67.583 68.583 0 0 0 0 0.85447 1 37961 37961 0.96228 0 1 + 22135 19376 15005 15292 26153 26153 -0.036723313389074974 IEETITESF 9 Unmodified _IEETITESF_ 0 0 0 ENST00000494277.5_1_10:54076062-54077710:+|nuORF;ENSG00000107984|ENST00000373970|DKK1 ENST00000494277.5_1_10:54076062-54077710:+|nuORF ENST00000494277.5_1_10:54076062-54077710:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7594604492188 2 534.758412 1067.50227 NaN NaN NaN NaN NaN NaN NaN 46.874 1 46.874 46.374 47.374 0 0 0 0 0.6557 1 25638 25638 10.824 3.5347 1 22136 2539 15006 15293 26154 26154 -0.028779834756505807 IEFCAPVTIL 10 Unmodified _IEFCAPVTIL_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7722778320312 2 553.301736 1104.58892 0.63927 0.00035371 -1.9358 -0.0010711 -1.2965 -0.00071734 553.3010335697738 61.047 0.17393 61.047 60.975 61.149 0 9 6 2 0 0 0 0.23325 1 34031 34031 10.074 0 1 326060 + 22137 20254 15007 15294 26155 26155 0.040807245452015195 IEFLYPSCCA 10 Unmodified _IEFLYPSCCA_ 0 0 0 REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF REV__ENST00000459929.5_1_1:185275751-185278625:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.2557983398438 2 573.253928 1144.4933 NaN NaN NaN NaN NaN NaN NaN 70.674 1 64.498 63.998 64.998 -6.1757 0 0 0 0.78298 1 46195 46195 13.042 1.4022 1 + 22138 19056 15008 15295 26156 26156 -0.07316371637330121 IEFVECSATF 10 Unmodified _IEFVECSATF_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2626953125 2 573.262807 1144.51106 NaN NaN NaN NaN NaN NaN NaN 74.748 1 74.748 74.248 75.248 0 0 0 0 0.97302 1 41589 41589 3.5965 1.5367 1 + 22139 23951 15009 15296 26157 26157 -0.05541333110841151 IEFVRSQPQ 9 Unmodified _IEFVRSQPQ_ 0 0 0 REV__ENST00000354921.7_1_1:177913774-177917075:-|nuORF REV__ENST00000354921.7_1_1:177913774-177917075:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2973022460938 2 552.29583 1102.57711 0.86311 0.00047669 0.80595 0.00044512 1.6691 0.00092181 552.2959696032235 30.306 0.37987 26.809 26.612 26.992 -3.497 43 18 3 0 0 0 0.036857 1 17030 17030 51.63 7.7715 1 91597000 + 22140 25797 15010 15297 26158 26158 0.029922438462335776 IEGKQYDSIL 10 Unmodified _IEGKQYDSIL_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.8074951171875 2 583.308603 1164.60265 0.71654 0.00041797 -1.8613 -0.0010857 -1.1448 -0.00066776 583.3073728907973 99.132 0.085709 92.957 92.923 93.009 -6.1757 6 4 2 0 0 0 0.21783 1 65963 65963 18.146 0 1 33843000 22141 8120 15011 15298 26159 26159 0.026936735780054732 IEGLDIHFI 9 Unmodified _IEGLDIHFI_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.6686401367188 2 528.78985 1055.56515 0.33131 0.0001752 -2.93 -0.0015494 -2.5987 -0.0013742 528.7899259987553 40.102 0.35851 40.102 39.812 40.17 0 27 17 2 0 0 0 0.21367 1 21368 21368 4.756 0.42677 1 1491100 22142 5557 15012 15299 26160 26160 0.03958627103043 IEGLIEKDVSF 11 Unmodified _IEGLIEKDVSF_ 0 0 0 REV__nc|ENSG00000289720|Q96J02-3|ITCH REV__nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3380737304688 2 625.337361 1248.66017 0.79283 0.00049578 0.42336 0.00026474 1.2162 0.00076053 625.3374899904348 83.439 0.56215 77.263 77.005 77.567 -6.1757 63 29 3 0 0 0 0.53952 1 54737 54737 14.405 1.3629 1 102590000 + 22143 17635 15013 15300 26161 26161 0.045785157835553036 IEGLKLEYP 9 Unmodified _IEGLKLEYP_ 0 0 0 REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2967529296875 2 531.297507 1060.58046 0.66936 0.00035563 -1.3477 -0.00071603 -0.67834 -0.0003604 531.2963626642611 49.392 0.35973 49.392 49.105 49.465 0 30 16 3 0 0 0 0.15471 1 27175 27175 27.629 0.74515 1 6605400 + 22144 26534 15014 15301 26162 26162 0.05259493900234702 IEGLKLEYP 9 Unmodified _IEGLKLEYP_ 0 0 0 REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.297507 1060.58046 0.66936 0.00035563 -1.3477 -0.00071603 -0.67834 -0.0003604 531.2963626642611 49.392 0.35973 49.392 49.105 49.465 0 0.00072247 -0.00025692 NaN 27.629 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6605400 + 22145 26534 15014 15301 0.05259493900234702 IEGLKLEYP 9 Unmodified _IEGLKLEYP_ 0 0 0 REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF REV__ENST00000397387.2_1_13:101408869-101409262:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.297507 1060.58046 0.73402 0.00038999 -0.98036 -0.00052086 -0.24634 -0.00013088 531.2972417577901 49.783 0.17228 49.391 49.258 49.431 -0.3923 -0.00072247 0.0001334 NaN 27.629 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2333800 + 22146 26534 15014 15301 0.05259493900234702 IEHKYRGL 8 Unmodified _IEHKYRGL_ 0 0 0 REV__ENST00000481804.5_1_16:772680-773505:-|nuORF REV__ENST00000481804.5_1_16:772680-773505:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2877502441406 2 508.287808 1014.56106 NaN NaN NaN NaN NaN NaN NaN 83.662 1 83.662 83.162 84.162 0 0 0 0 0.97444 1 46394 46394 4.3292 1.44 1 + 22147 21619 15015 15302 26163 26163 0.05436582400000134 IEHLSRLYIAY 11 Unmodified _IEHLSRLYIAY_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 689.3807983398438 2 689.379894 1376.74524 0.19532 0.00013465 1.2856 0.00088624 1.4809 0.0010209 689.3805343675812 72.421 0.21307 72.462 72.358 72.571 0.041725 23 9 3 0 0 0 0.66968 1 39891 39891 7.1017 0 1 2092200 22148 4861 15016 15303 26164 26164 0.07193306040062453 IEHQVYPYT 9 Unmodified _IEHQVYPYT_ 0 0 0 REV__nc|ENSG00000168675|O15165-8|LDLRAD4 REV__nc|ENSG00000168675|O15165-8|LDLRAD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2825317382812 2 575.282389 1148.55022 NaN NaN NaN NaN NaN NaN NaN 60.246 1 60.246 59.746 60.746 0 0 0 0 0.7818 1 33595 33595 6.7232 0.51738 1 + 22149 22332 15017 15304 26165 26165 -0.01810864764956932 IEIGYNYFYLF 11 Unmodified _IEIGYNYFYLF_ 0 0 0 ENST00000483346.2_1_2:200213306-200233427:-|nuORF ENST00000483346.2_1_2:200213306-200233427:-|nuORF ENST00000483346.2_1_2:200213306-200233427:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 721.3584594726562 2 721.355554 1440.69655 NaN NaN NaN NaN NaN NaN NaN 77.336 1 71.16 70.66 71.66 -6.1757 0 0 0 0.85601 1 50581 50581 9.3831 3.1773 1 22150 14128 15018 15305 26166 26166 -0.0061660731971642235 IEKFVDLCM 9 Unmodified _IEKFVDLCM_ 0 0 0 REV__ENSG00000106246|ENST00000292478|PTCD1 REV__ENSG00000106246|ENST00000292478|PTCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2032775878906 3 366.517173 1096.52969 -0.58327 -0.00021378 0.23194 8.501E-05 -0.35134 -0.00012877 366.5171647568123 16.997 0.16736 16.997 16.928 17.095 0 107 47 3 0 0 0 0.61256 1 8302 8302 0.26902 0.033176 1 3814400 + 22151 18494 15019 15306 26167 26167 -0.014714947406218926 IEKHETFI 8 Unmodified _IEKHETFI_ 0 0 0 REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7756652832031 2 508.7742 1015.53385 0.32139 0.00016352 -0.92955 -0.00047293 -0.60815 -0.00030941 508.7736035549834 72.32 0.87904 71.844 71.594 72.473 -0.47609 113 40 5 0 0 0 0.72953 1 39730 39730 14.582 0 1 300810000 + 22152 26948 15020 15307 26168 26168 0.02670054068948957 IEKHLEEIL 9 Unmodified _IEKHLEEIL_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.2168579101562 3 375.216768 1122.62847 -0.51295 -0.00019247 0.93352 0.00035027 0.42057 0.0001578 375.2172547743473 18.902 0.65187 18.902 18.495 19.147 0 99 55 4 0 0 0 0.30202 1 9400 9400 17.113 1.3743 1 27882000 + 22153 17834 15021 15308 26169 26169 0.07206567820298915 IEKHLEEIL 9 Unmodified _IEKHLEEIL_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.216768 1122.62847 -0.51295 -0.00019247 0.93352 0.00035027 0.42057 0.0001578 375.2172547743473 18.902 0.65187 18.902 18.495 19.147 0 0.031462 9.5828E-05 NaN 17.113 99 55 4 NaN NaN NaN NaN 0 NaN NaN 0 27882000 + 22154 17834 15021 15308 0.07206567820298915 IEKHLEEIL 9 Unmodified _IEKHLEEIL_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 375.216768 1122.62847 -0.55953 -0.00020995 0.75269 0.00028242 0.19316 7.2475E-05 375.2169806903468 18.816 0.13496 18.839 18.778 18.913 0.023106 -0.031462 -0.00010773 NaN 17.113 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1844900 + 22155 17834 15021 15308 0.07206567820298915 IEKHQSSIGF 10 Unmodified _IEKHQSSIGF_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS AL20221201_MKP_PDAC_01 4 382.5361633300781 3 382.536501 1144.58767 NaN NaN NaN NaN NaN NaN NaN 14.642 1 12.139 11.639 12.639 -2.5029 0 0 0 0.97302 1 7451 7451 1.7423 0.52744 1 22156 6002 15022 15309 26170 26170 0.021162265006751113 IEKIEDMDD 9 Unmodified _IEKIEDMDD_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2452392578125 2 554.247354 1106.48016 NaN NaN NaN NaN NaN NaN NaN 15.415 1 15.401 14.901 15.901 -0.014067 0 0 0 0.85852 1 7564 7564 0.45834 0.45834 1 22157 3280 15023 15310 26171 26171 -0.06882531215705967 IEKKRQRM 8 Unmodified _IEKKRQRM_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU;nc|ENSG00000151725|Q71F23-3|CENPU nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7955322265625 2 544.821492 1087.62843 0.80361 0.00043782 -0.62338 -0.00033963 0.18023 9.8191E-05 544.8212821418497 69 1.5189 62.824 62.129 63.648 -6.1757 125 85 2 0 0 0 8.7369 1 45008 45008 2.5775 2.5775 1 24820000 22158 6142 15024 15311 26172 26172 0.08812289339289237 IEKLKNRY 8 Unmodified _IEKLKNRY_ 0 0 0 nc|ENSG00000284862|Q9UFE4-2|CCDC39;nc|ENSG00000284862|Q9UFE4|CCDC39 nc|ENSG00000284862|Q9UFE4-2|CCDC39 nc|ENSG00000284862|Q9UFE4-2|CCDC39 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7664184570312 2 532.316566 1062.61858 -0.70029 -0.00037278 -3.7959 -0.0020206 -4.4962 -0.0023934 532.314171885919 32.2 0.11837 32.2 32.105 32.223 0 8 5 2 0 0 0 8.7369 1 16795 16795 2.3027 0 1 1244800 22159 16617 15025 15312 26173 26173 0.0897742460556401 IEKLYINRI 9 Unmodified _IEKLYINRI_ 0 0 0 ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A;ZC3H7A|p.A97T|1|0.09|ENSG00000122299|chr16:11779183-11779183|C/T|missense_variant;ENST00000575170.1_1_16:11869425-11876228:-|nuORF ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.9041748046875 3 387.904524 1160.69174 -0.31265 -0.00012128 -0.43188 -0.00016753 -0.74453 -0.00028881 387.9044487273133 56.266 0.26392 56.197 56.075 56.339 -0.068741 31 13 3 0 0 0 0.047196 1 30595 30595 41.956 12.518 1 5774400 22160 3629 15026 15313 26174 26174 0.11782553328202994 IEKMKTLVMSS 11 Unmodified _IEKMKTLVMSS_ 0 0 0 REV__ENST00000532780.5_1_11:122930757-122933127:-|nuORF REV__ENST00000532780.5_1_11:122930757-122933127:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8994140625 3 422.898053 1265.67233 NaN NaN NaN NaN NaN NaN NaN 47.011 1 46.977 46.477 47.477 -0.033417 0 0 0 0.93224 1 25313 25313 4.7159 3.5011 1 + 22161 18682 15027 15314 26175 26175 0.050120929307695405 IEKQDDMTSF 10 Unmodified _IEKQDDMTSF_ 0 0 0 nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;ENST00000566319.2_1_16:47699793-47733274:+|nuORF nc|ENSG00000102893|Q93100-4|PHKB nc|ENSG00000102893|Q93100-4|PHKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.185791015625 3 405.185028 1212.53325 0.36738 0.00014886 0.53486 0.00021672 0.90224 0.00036557 405.185255201124 22.8 0.43051 20.021 19.857 20.287 -2.7784 76 30 3 0 0 0 0.67459 1 12246 12246 3.0723 1.33 1 11831000 22162 2076 15028 15315 26176 26176 -0.06451153433067702 IEKRRKIAHL 10 Unmodified _IEKRRKIAHL_ 0 0 0 REV__ENST00000504251.6_1_5:40728574-40756023:-|nuORF REV__ENST00000504251.6_1_5:40728574-40756023:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.274169921875 3 421.938451 1262.79352 1.8561 0.00078318 0.63211 0.00026671 2.4883 0.0010499 421.93859579936145 105.06 0.16051 98.887 98.803 98.964 -6.1757 51 21 3 0 0 0 0.71276 1 70315 70315 0.62683 0 1 245090000 + 22163 18882 15029 15316 26177 26177 0.17263844470608092 IEKSLVEPKE 10 Unmodified _IEKSLVEPKE_ 0 0 0 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MSMS AL20221201_MKP_PDAC_01 4 391.225830078125 3 391.223811 1170.6496 NaN NaN NaN NaN NaN NaN NaN 85.569 1 79.394 78.894 79.894 -6.1757 0 0 0 0.97592 1 56364 56364 1.5923 0 1 22164 4285 15030 15317 26178 26178 0.07110533129139185 IEKSNPIDW 9 Unmodified _IEKSNPIDW_ 0 0 0 REV__ENSG00000164338|ENST00000296792|UTP15 REV__ENSG00000164338|ENST00000296792|UTP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2827758789062 2 551.282389 1100.55022 0.39194 0.00021607 0.92062 0.00050752 1.3126 0.00072359 551.2828732201151 79.511 0.2409 79.511 79.372 79.613 0 15 9 2 0 0 0 0.47846 1 44182 44182 8.7454 0 1 370110 + 22165 21909 15031 15318 26179 26179 0.003971352350617963 IEKVVYTVK 9 Unmodified _IEKVVYTVK_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MSMS AL20221201_MKP_PDAC_01 4 360.2224731445312 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 68.353 1 62.177 61.677 62.677 -6.1757 0 0 0 0.54558 1 44610 44610 14.405 2.8875 1 22166 1582 15032 15319 26180 26180 0.10768059688280118 IELCNQMLPFY 11 Unmodified _IELCNQMLPFY_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2231750488281 3 457.554286 1369.64103 0.35182 0.00016098 2.2394 0.0010247 2.5912 0.0011856 457.55563720435777 40.354 0.37305 40.057 39.804 40.177 -0.29716 40 17 4 0 0 0 0.68427 1 21264 21264 2.6312 0.19645 1 6431100 + 22167 23140 15033 15320 26181 26181 -0.029004801033352123 IELDNALEVY 10 Unmodified _IELDNALEVY_ 0 0 0 REV__nc|ENSG00000032742|Q13099-3|IFT88 REV__nc|ENSG00000032742|Q13099-3|IFT88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8010864257812 2 589.800611 1177.58667 0.80929 0.00047732 -3.6823 -0.0021718 -2.873 -0.0016945 590.8003878696552 49.923 0.57829 49.531 49.333 49.911 -0.3923 92 28 5 0 0 0 0.23548 1 26827 26827 31.268 8.5321 1 32925000 + 22168 17150 15034 15321 26182 26182 0.004979673411071417 IELDQKQKEL 10 Unmodified _IELDQKQKEL_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MSMS AL20221201_MKP_PDAC_01 4 415.236572265625 3 415.234599 1242.68197 NaN NaN NaN NaN NaN NaN NaN 92.434 1 86.258 85.758 86.758 -6.1757 0 0 0 0.68184 1 61128 61128 11.631 2.3876 1 + 22169 19637 15035 15322 26183 26183 0.07033320532150356 IELEKEPL 8 Unmodified _IELEKEPL_ 0 0 0 REV__ENSG00000164066|ENST00000335251|INTU REV__ENSG00000164066|ENST00000335251|INTU MSMS AL20221201_MKP_PDAC_01 4 485.7755126953125 2 485.776408 969.538263 NaN NaN NaN NaN NaN NaN NaN 55.043 1 49.122 48.622 49.622 -5.9211 0 0 0 0.5695 1 34986 34986 36.127 1.7253 1 + 22170 21858 15036 15323 26184 26184 0.05227518491858518 IELGLHKML 9 Unmodified _IELGLHKML_ 0 0 0 REV__nc|ENSG00000077463|Q8N6T7-2|SIRT6 REV__nc|ENSG00000077463|Q8N6T7-2|SIRT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8774719238281 3 351.875689 1052.60524 NaN NaN NaN NaN NaN NaN NaN 13.777 1 13.785 13.285 14.285 0.0073986 0 0 0 0.79771 1 6802 6802 3.8763 0 1 + 22171 17612 15037 15324 26185 26185 0.08103850501970555 IELHLREML 9 Unmodified _IELHLREML_ 0 0 0 REV__ENST00000482385.5_1_1:161132454-161133955:+|nuORF REV__ENST00000482385.5_1_1:161132454-161133955:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3280639648438 2 577.323534 1152.63251 1.2298 0.00070997 1.5161 0.0008753 2.7459 0.0015853 577.322699333256 94.093 0.22047 87.917 87.88 88.1 -6.1757 21 12 2 0 0 0 0.1773 1 62373 62373 25.399 0.72543 1 12542000 + 22172 20617 15038 15325 26186 26186 0.06230334042356844 IELKGSPH 8 Unmodified _IELKGSPH_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7466430664062 2 440.747985 879.481417 NaN NaN NaN NaN NaN NaN NaN 35.469 1 35.469 34.969 35.969 0 0 0 0 0.4236 1 18753 18753 50.855 0 1 + 22173 18678 15039 15326 26187 26187 0.036855157259992666 IELNPSNAIY 10 Unmodified _IELNPSNAIY_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2739868164062 2 567.295496 1132.57644 0.096197 5.4572E-05 0.86498 0.0004907 0.96118 0.00054527 567.2953768450203 51.858 0.19883 51.858 51.777 51.976 0 13 8 2 0 0 0 0.22811 1 28668 28668 14.838 0 1 5660200 22174 451 15040 15327 26188 26188 0.015454044065336348 IELNSFNQF 9 Unmodified _IELNSFNQF_ 0 0 0 REV__ENSG00000101916|ENST00000218032|TLR8 REV__ENSG00000101916|ENST00000218032|TLR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2745361328125 2 556.274564 1110.53457 0.36893 0.00020523 -0.7432 -0.00041342 -0.37426 -0.00020819 556.2740926013701 66.414 0.31834 65.93 65.792 66.11 -0.48323 42 15 3 0 0 0 0.23158 1 36251 36251 20.454 3.3407 1 3594300 + 22175 18203 15041 15328 26189 26189 -0.016271512820139833 IELQDSQNPFQ 11 Unmodified _IELQDSQNPFQ_ 0 0 0 ENSG00000198879|ENST00000397167|SFMBT2 ENSG00000198879|ENST00000397167|SFMBT2 ENSG00000198879|ENST00000397167|SFMBT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2311096191406 3 440.213975 1317.62009 0.065149 2.868E-05 -0.11665 -5.1353E-05 -0.051505 -2.2673E-05 440.214172759906 37.067 0.46894 37.089 36.816 37.285 0.021545 44 21 3 0 0 0 0.30551 1 19511 19511 2.6312 0.72486 1 3372800 22176 10183 15042 15329 26190 26190 -0.02601030887012712 IELSFYDAL 9 Unmodified _IELSFYDAL_ 0 0 0 REV__nc|ENSG00000076242|P40692-2|MLH1 REV__nc|ENSG00000076242|P40692-2|MLH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.519287109375 3 357.518336 1069.53318 1.2809 0.00045793 1.5024 0.00053714 2.7833 0.00099507 357.5188900328256 78.733 0.49993 72.557 72.468 72.967 -6.1757 50 28 3 0 0 0 0.48152 1 51566 51566 5.2969 0 1 8346400 + 22177 17585 15043 15330 26191 26191 0.001192146292396501 IEMPSHQTY 9 Unmodified _IEMPSHQTY_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8245239257812 2 553.252774 1104.491 0.30846 0.00017066 0.13797 7.6334E-05 0.44643 0.00024699 553.2531755817521 55.753 0.4342 55.275 55.005 55.44 -0.47798 35 20 2 0 0 0 0.18118 1 30108 30108 18.135 2.2878 1 6639000 22178 5778 15044 15331 26192 26192 -0.05707084050754929 IENCITCEML 10 Unmodified _IENCITCEML_ 0 0 0 REV__ENST00000471231.6_1_16:30937150-30941463:+|nuORF REV__ENST00000471231.6_1_16:30937150-30941463:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.755126953125 2 584.755978 1167.4974 NaN NaN NaN NaN NaN NaN NaN 77.672 1 77.672 77.172 78.172 0 0 0 0 0.97592 1 43181 43181 3.2813 0.97858 1 + 22179 17977 15045 15332 26193 26193 -0.07964650205940416 IENEFDKL 8 Unmodified _IENEFDKL_ 0 0 0 REV__ENST00000459706.1_1_2:15757448-15761320:+|nuORF REV__ENST00000459706.1_1_2:15757448-15761320:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7591857910156 2 504.25584 1006.49713 0.49176 0.00024797 0.55465 0.00027969 1.0464 0.00052766 504.25610188545187 56.744 0.29037 56.744 56.564 56.855 0 23 12 2 0 0 0 8.7369 1 31521 31521 11.64 1.5664 1 3134400 + 22180 27281 15046 15333 26194 26194 -0.005862425476038879 IENKPRWYY 9 Unmodified _IENKPRWYY_ 0 0 0 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8245849609375 2 634.824755 1267.63496 0.10009 6.3539E-05 -0.99458 -0.00063139 -0.89449 -0.00056785 634.8241852633315 80.047 0.36127 80.047 79.864 80.225 0 31 19 2 0 0 0 0.5029 1 44405 44405 7.2892 0.56607 1 1202900 + 22181 21039 15047 15334 26195 26195 0.011845057716755036 IENKPRWYY 9 Unmodified _IENKPRWYY_ 0 0 0 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.825927734375 2 634.824755 1267.63496 0.55 0.00034915 0.42405 0.0002692 0.97405 0.00061835 634.8250173679569 80.646 0.37047 80.154 79.88 80.251 -0.49247 21 14 2 0 0 0 0.5029 1 44101 44101 7.2892 2.5332 1 807200 + 22182 21039 15047 15334 26196 26196 0.011845057716755036 IENKPRWYY 9 Unmodified _IENKPRWYY_ 0 0 0 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 634.824755 1267.63496 0.10009 6.3539E-05 -0.99458 -0.00063139 -0.89449 -0.00056785 634.8241852633315 80.047 0.36127 80.047 79.864 80.225 0 -0.053122 -0.00071002 NaN 7.2892 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1202900 + 22183 21039 15047 15334 0.011845057716755036 IENKPRWYY 9 Unmodified _IENKPRWYY_ 0 0 0 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 634.824755 1267.63496 0.55 0.00034915 0.42405 0.0002692 0.97405 0.00061835 634.8250173679569 80.646 0.37047 80.154 79.88 80.251 -0.49247 0.053122 0.0010911 NaN 7.2892 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 807200 + 22184 21039 15047 15334 0.011845057716755036 IENNSTLL 8 Unmodified _IENNSTLL_ 0 0 0 nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2426452636719 2 452.242732 902.470912 -0.078296 -3.5409E-05 -0.26206 -0.00011852 -0.34036 -0.00015393 452.2425599703678 20.722 0.63666 20.722 20.444 21.08 0 141 80 3 0 0 0 0.19493 1 10396 10396 71.922 7.686 1 4598000 22185 7978 15048 15335 26197 26197 0.0157748828091826 IENNSTLL 8 Unmodified _IENNSTLL_ 0 0 0 nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2434692382812 2 452.242732 902.470912 0.27077 0.00012246 0.81221 0.00036732 1.083 0.00048977 452.2431916863891 23.25 0.26502 20.472 20.435 20.7 -2.7784 32 20 2 0 0 0 0.18544 1 12589 12589 75.761 7.6801 1 6262900 22186 7978 15048 15335 26198 26198 0.0157748828091826 IENRTSVLHD 10 Unmodified _IENRTSVLHD_ 0 0 0 REV__ENST00000607230.1_1_6:13327129-13328784:-|nuORF REV__ENST00000607230.1_1_6:13327129-13328784:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.3088989257812 2 592.306926 1182.5993 NaN NaN NaN NaN NaN NaN NaN 28.492 1 28.492 27.992 28.992 0 0 0 0 0.99008 1 14719 14719 0.35063 0 1 + 22187 29311 15049 15336 26199 26199 0.015304235239909758 IENTIDIME 9 Unmodified _IENTIDIME_ 0 0 0 ENST00000503051.1_1_4:53527397-53527544:+|nuORF ENST00000503051.1_1_4:53527397-53527544:+|nuORF ENST00000503051.1_1_4:53527397-53527544:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7643432617188 2 539.260265 1076.50598 0.41308 0.00022276 3.9499 0.00213 4.363 0.0023528 539.2638357988163 52.159 0.22657 46.424 46.304 46.53 -5.7345 22 14 2 0 0 0 0.044011 1 32978 32978 47.749 2.0491 1 46656000 22188 14465 15050 15337 26200 26200 -0.029216369734513137 IENWGSDFLC 10 Unmodified _IENWGSDFLC_ 0 0 0 nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;ENST00000479065.5_1_2:28829398-28841281:+|nuORF;nc|ENSG00000163803|Q6P1J6-5|PLB1 nc|ENSG00000163803|Q6P1J6-3|PLB1 nc|ENSG00000163803|Q6P1J6-3|PLB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1751403808594 3 395.174463 1182.50156 NaN NaN NaN NaN NaN NaN NaN 71.394 1 71.394 70.894 71.894 0 0 0 0 0.99388 1 39768 39768 0.56317 0.057215 1 22189 7070 15051 15338 26201 26201 -0.0823910139633881 IENYRHHI 8 Unmodified _IENYRHHI_ 0 0 0 DUOX1|p.R1043H|1|0.16|ENSG00000137857|chr15:45151987-45151987|G/A|missense_variant DUOX1|p.R1043H|1|0.16|ENSG00000137857|chr15:45151987-45151987|G/A|missense_variant DUOX1|p.R1043H|1|0.16|ENSG00000137857|chr15:45151987-45151987|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7676391601562 2 541.280515 1080.54648 0.30515 0.00016517 1.6368 0.00088599 1.942 0.0010512 541.7814159518049 86.596 0.14537 86.093 86.02 86.165 -0.50318 7 5 2 0 0 0 8.7369 1 47359 47359 8.5933 1.304 1 244740 22190 244 15052 15339 26202 26202 0.009425102518434869 IEPIRRKGNYL 11 Unmodified _IEPIRRKGNYL_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.9364013671875 3 453.601616 1357.78302 NaN NaN NaN NaN NaN NaN NaN 26.048 1 26.075 25.575 26.575 0.026951 0 0 0 0.92939 1 13502 13502 5.8681 0.46543 1 22191 6568 15053 15340 26203 26203 0.11843817025533099 IEPLHIFPI 9 Unmodified _IEPLHIFPI_ 0 0 0 REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14 REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8208618164062 2 539.81841 1077.62227 3.8278 0.0020663 1.3923 0.00075159 5.2201 0.0028179 539.8194596751518 98.446 0.28595 98.418 98.273 98.559 -0.028282 33 10 4 0 0 0 0.25297 1 54666 54666 19.439 2.4967 1 3586800 + 22192 21720 15054 15341 26204 26204 0.0865609437942112 IEPMGSLLL 9 Unmodified _IEPMGSLLL_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.548095703125 1 972.543431 971.536154 0.28913 0.00028119 3.7122 0.0036103 4.0013 0.0038915 972.5463088115547 95.279 0.38309 94.911 94.754 95.137 -0.36814 27 17 2 0 0 0 0.41742 1 52023 52023 11.64 0 1 774620 + 22193 17748 15055 15342 26205 26205 0.04924766482429277 IEPQFYEL 8 Unmodified _IEPQFYEL_ 0 0 0 ENST00000506639.5_1_5:33994220-34005893:-|nuORF;ENSG00000242110|ENST00000335606|AMACR;nc|ENSG00000242110|Q9UHK6-5|AMACR ENST00000506639.5_1_5:33994220-34005893:-|nuORF ENST00000506639.5_1_5:33994220-34005893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7633666992188 2 519.760758 1037.50696 1.5576 0.0008096 1.061 0.00055148 2.6187 0.0013611 519.7621533821542 79.403 0.53427 73.228 72.93 73.464 -6.1757 95 30 4 0 0 0 0.74163 1 51889 51889 13.508 0.97634 1 167420000 22194 10691 15056 15343 26206 26206 -0.010290545422321884 IEPRPPNWQIE 11 Unmodified _IEPRPPNWQIE_ 0 0 0 REV__ENSG00000016490|ENST00000394711|CLCA1 REV__ENSG00000016490|ENST00000394711|CLCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.8594970703125 2 689.859326 1377.7041 0.34044 0.00023486 -0.37073 -0.00025575 -0.030286 -2.0893E-05 689.8590135534139 48.476 0.19818 48.105 47.983 48.181 -0.37172 20 9 3 0 0 0 0.66968 1 26009 26009 7.1017 0 1 2750300 + 22195 17091 15057 15344 26207 26207 0.030355450005572493 IEPRRRYL 8 Unmodified _IEPRRRYL_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS AL20221201_MKP_PDAC_01 4 368.2212219238281 3 368.220847 1101.64071 NaN NaN NaN NaN NaN NaN NaN 19.487 1 16.831 16.331 17.331 -2.6564 0 0 0 0.93394 1 10326 10326 13.906 5.7505 1 + 22196 29841 15058 15345 26208 26208 0.09395649073985624 IEPSALMTI 9 Unmodified _IEPSALMTI_ 0 0 0 REV__nc|ENSG00000133318|O95197-6|RTN3 REV__nc|ENSG00000133318|O95197-6|RTN3 MSMS AL20221201_MKP_PDAC_01 4 487.765869140625 2 487.764986 973.515419 NaN NaN NaN NaN NaN NaN NaN 76.845 1 70.669 70.169 71.169 -6.1757 0 0 0 0.36554 1 50260 50260 21.747 0 1 + 22197 29633 15059 15346 26209 26209 0.02760176102742662 IEQARVLL 8 Unmodified _IEQARVLL_ 0 0 0 REV__nc|ENSG00000262980|Q8NGH6|OR52L2P REV__nc|ENSG00000262980|Q8NGH6|OR52L2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2915954589844 2 471.292559 940.570566 0.041596 1.9604E-05 -0.17827 -8.4016E-05 -0.13667 -6.4412E-05 471.2923592727219 45.72 0.29587 45.692 45.549 45.844 -0.028011 31 14 3 0 0 0 0.57045 1 24650 24650 28.487 3.0875 1 14435000 + 22198 29994 15060 15347 26210 26210 0.09790350685523208 IEQFSVPQ 8 Unmodified _IEQFSVPQ_ 0 0 0 REV__ENSG00000154997|ENST00000388975|SEPTIN14 REV__ENSG00000154997|ENST00000388975|SEPTIN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.245361328125 2 474.245275 946.475997 0.46054 0.00021841 -0.20141 -9.5516E-05 0.25914 0.00012289 474.2451373054585 53.936 0.68905 53.469 53.152 53.841 -0.46664 59 34 2 0 0 0 0.60622 1 29150 29150 25.399 1.3787 1 12126000 + 22199 21254 15061 15348 26211 26211 0.0006179214353778661 IEQFSVPQ 8 Unmodified _IEQFSVPQ_ 0 0 0 REV__ENSG00000154997|ENST00000388975|SEPTIN14 REV__ENSG00000154997|ENST00000388975|SEPTIN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7459411621094 2 474.245275 946.475997 1.1015 0.00052238 -0.68404 -0.0003244 0.41746 0.00019798 474.24516966349245 61.571 0.66841 55.395 54.968 55.637 -6.1757 56 33 2 0 0 0 0.38756 1 39508 39508 45.7 11.298 1 66857000 + 22200 21254 15061 15348 26212 26212 0.0006179214353778661 IEQLYAAQL 9 Unmodified _IEQLYAAQL_ 0 0 0 nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6 nc|ENSG00000110693|P35712-3|SOX6 nc|ENSG00000110693|P35712-3|SOX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1930236816406 3 350.193963 1047.56006 0.87258 0.00030557 -2.1559 -0.00075498 -1.2833 -0.00044941 350.52733896701153 15.127 0.11687 12.6 12.52 12.637 -2.5273 22 17 2 0 0 0 0.42049 1 7733 7733 11.495 3.3392 1 1091300 22201 2730 15062 15349 26213 26213 0.038183232404207956 IEQQRLKAY 9 Unmodified _IEQQRLKAY_ 0 0 0 REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF REV__ENST00000434096.1_1_2:58688403-58689123:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8248901367188 2 574.824755 1147.63496 0.49995 0.00028738 0.24139 0.00013876 0.74134 0.00042614 574.8247827338497 40.226 0.24811 40.231 40.068 40.316 0.0050545 29 11 3 0 0 0 0.03568 1 21404 21404 52.268 0 1 7598100 + 22202 18854 15063 15350 26214 26214 0.0670450577167685 IERFCTIYL 9 Unmodified _IERFCTIYL_ 0 0 0 REV__ENSG00000123607|ENST00000243344|TTC21B REV__ENSG00000123607|ENST00000243344|TTC21B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3047485351562 2 579.30481 1156.59507 0.58484 0.0003388 -0.83138 -0.00048162 -0.24655 -0.00014283 579.3046891826264 73.405 0.31662 73.449 73.272 73.589 0.043983 38 13 4 0 0 0 0.12424 1 40421 40421 30.637 7.4881 1 5301200 + 22203 19398 15064 15351 26215 26215 0.023032427767475383 IERLKTKQ 8 Unmodified _IERLKTKQ_ 0 0 0 nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22 nc|ENSG00000079616|Q14807-2|KIF22 nc|ENSG00000079616|Q14807-2|KIF22 MSMS AL20221201_MKP_PDAC_01 4 508.3157043457031 2 508.316566 1014.61858 NaN NaN NaN NaN NaN NaN NaN 74.448 1 68.272 67.772 68.772 -6.1757 0 0 0 0.59568 1 48673 48673 34.402 2.0962 1 22204 1281 15065 15352 26216 26216 0.1118542460557137 IERLRQKQL 9 Unmodified _IERLRQKQL_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.24658203125 3 395.247173 1182.71969 0.017348 6.8566E-06 -0.6011 -0.00023758 -0.58375 -0.00023073 395.24688156819576 34.082 0.5012 34.111 33.745 34.246 0.028934 38 22 3 0 0 0 0.35911 1 17932 17932 14.405 0.79051 1 3830300 + 22205 24074 15066 15353 26217 26217 0.13563876308285217 IERLRQKQL 9 Unmodified _IERLRQKQL_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.247173 1182.71969 -0.23893 -9.4436E-05 -0.5764 -0.00022782 -0.81533 -0.00032226 395.24684531172966 34.43 0.14079 34.238 34.13 34.271 -0.19131 0.063759 2.5796E-05 NaN 14.405 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1830900 + 22206 24074 15066 15353 0.13563876308285217 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2511901855469 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 18.204 1 18.204 17.704 18.704 0 0 0 0 0.85359 1 9032 9032 1.0715 0.10919 1 22207 895 15067 15354 26218 26218 0.14134698402403956 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2504577636719 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 80.652 1 80.652 80.152 81.152 0 0 0 0 0.86004 1 44779 44779 0.26902 0 1 22208 895 15067 15354 26219 26219 0.14134698402403956 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2503356933594 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 21.759 1 21.782 21.282 22.282 0.022896 0 0 0 0.86004 1 11052 11052 0.26902 0 1 22209 895 15067 15354 26220 26220 0.14134698402403956 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2508850097656 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 59.537 1 59.046 58.546 59.546 -0.49079 0 0 0 0.86004 1 32394 32394 0.26902 0 1 22210 895 15067 15354 26221 26221 0.14134698402403956 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2502746582031 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 61.25 1 60.761 60.261 61.261 -0.48932 0 0 0 0.86004 1 33360 33360 0.26902 0 1 22211 895 15067 15354 26222 26222 0.14134698402403956 IERRPKLQR 9 Unmodified _IERRPKLQR_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20221201_MKP_PDAC_01 4 399.2516174316406 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 1.7502 1 -0.7318 -1.2318 -0.2318 -2.482 0 0 0 0.86004 1 902 902 0.26902 0 1 22212 895 15067 15354 26223 26223 0.14134698402403956 IERTIKKREKD 11 Unmodified _IERTIKKREKD_ 0 0 0 REV__nc|ENSG00000152056|Q96PC3-3|AP1S3;REV__ENST00000444408.1_1_2:224640835-224702600:-|nuORF REV__nc|ENSG00000152056|Q96PC3-3|AP1S3 MSMS AL20221201_MKP_PDAC_01 4 472.6168518066406 3 472.615814 1414.82561 NaN NaN NaN NaN NaN NaN NaN 109.54 1 103.37 102.87 103.87 -6.1757 0 0 0 0.94184 1 73152 73152 0.40827 0 1 + 22213 21099;27122 15068 15355 26224 26224 0.13479167363084343 IERTPPVNSIN 11 Unmodified _IERTPPVNSIN_ 0 0 0 REV__ENSG00000138381|ENST00000260952|ASNSD1 REV__ENSG00000138381|ENST00000260952|ASNSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2276611328125 3 413.894577 1238.6619 1.119 0.00046313 0.83268 0.00034464 1.9516 0.00080777 413.89490281824476 19.137 0.54308 16.481 16.081 16.624 -2.6564 122 35 5 0 0 0 0.68777 1 9960 9960 2.732 0.29722 1 106710000 + 22214 20327 15069 15356 26225 26225 0.05211569592211163 IERWFVFII 9 Unmodified _IERWFVFII_ 0 0 0 REV__nc|ENSG00000214787|Q96PG1-3|MS4A4E REV__nc|ENSG00000214787|Q96PG1-3|MS4A4E MSMS AL20221201_MKP_PDAC_01 4 408.2398071289062 3 408.237615 1221.69102 NaN NaN NaN NaN NaN NaN NaN 85.056 1 78.88 78.38 79.38 -6.1757 0 0 0 0.46757 1 55992 55992 16.149 4.6312 1 + 22215 29938 15070 15357 26226 26226 0.08903758679139173 IERYMRRLEF 10 Unmodified _IERYMRRLEF_ 0 0 0 nc|ENSG00000111913|Q9Y4F9-2|RIPOR2;ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2 nc|ENSG00000111913|Q9Y4F9-2|RIPOR2 nc|ENSG00000111913|Q9Y4F9-2|RIPOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 706.8773803710938 2 706.876996 1411.73944 0.73559 0.00051997 -0.23964 -0.0001694 0.49595 0.00035057 706.8770006795479 95.06 0.32969 88.884 88.711 89.04 -6.1757 60 17 4 0 0 0 0.29752 1 63015 63015 27.629 8.2669 1 80720000 22216 2846 15071 15358 26227 26227 0.05003884256711899 IESDTLVEY 9 Unmodified _IESDTLVEY_ 0 0 0 REV__ENSG00000183340|ENST00000332349|JRKL REV__ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7572631835938 2 534.758412 1067.50227 0.98363 0.00052601 0.29568 0.00015812 1.2793 0.00068413 534.7579300399137 60.534 0.39118 54.386 54.161 54.552 -6.1478 39 20 3 0 0 0 0.34999 1 39029 39029 14.838 6.245 1 41973000 + 22217 23341 15072 15359 26228 26228 -0.028779834756505807 IESHLRYNW 9 Unmodified _IESHLRYNW_ 0 0 0 REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1 REV__nc|ENSG00000189050|Q5M7Z0-3|RNFT1 MSMS AL20221201_MKP_PDAC_01 4 609.3076171875 2 609.306729 1216.59891 NaN NaN NaN NaN NaN NaN NaN 20.62 1 17.927 17.427 18.427 -2.693 0 0 0 0.83049 1 10991 10991 3.9444 0 1 + 22218 29868 15073 15360 26229 26229 -0.0007295140517271648 IESIEHESR 9 Unmodified _IESIEHESR_ 0 0 0 REV__nc|ENSG00000141027|O75376-2|NCOR1 REV__nc|ENSG00000141027|O75376-2|NCOR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.7714233398438 2 550.272552 1098.53055 1.3307 0.00073224 0.16408 9.0288E-05 1.4948 0.00082253 550.2721533494171 98.33 0.30994 92.155 92.042 92.352 -6.1757 32 20 2 0 0 0 0.18521 1 65193 65193 11.64 0 1 16841000 + 22219 20513 15074 15361 26230 26230 -0.014772407757163819 IESIFIKLL 9 Unmodified _IESIFIKLL_ 0 0 0 REV__ENST00000403263.5_1_2:206860830-206860965:-|nuORF REV__ENST00000403263.5_1_2:206860830-206860965:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7928466796875 2 538.341718 1074.66888 0.43746 0.0002355 0.31236 0.00016816 0.74982 0.00040366 538.3419650502242 99.099 0.13298 92.924 92.841 92.974 -6.1757 18 7 3 0 0 0 0.062767 1 65924 65924 48.346 8.3885 1 57555000 + 22220 26627 15075 15362 26231 26231 0.13453534210702855 IESLLWIY 8 Unmodified _IESLLWIY_ 0 0 0 ENST00000489549.5_1_1:151060769-151060980:+|nuORF ENST00000489549.5_1_1:151060769-151060980:+|nuORF ENST00000489549.5_1_1:151060769-151060980:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.8244018554688 2 518.789318 1035.56408 1.2636 0.00065554 1.1292 0.00058581 2.3928 0.0012414 518.7893953070801 100.29 0.22398 94.116 93.978 94.202 -6.1757 17 13 2 0 0 0 8.7369 1 66920 66920 24.674 11.166 1 16789000 22221 14240 15076 15363 26232 26232 0.047724127341325584 IESLLWIY 8 Unmodified _IESLLWIY_ 0 0 0 ENST00000489549.5_1_1:151060769-151060980:+|nuORF ENST00000489549.5_1_1:151060769-151060980:+|nuORF ENST00000489549.5_1_1:151060769-151060980:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 518.789318 1035.56408 2.0326 0.0010545 0.33751 0.0001751 2.3701 0.0012296 518.7890402286772 94.49 0.18322 94.505 94.435 94.618 0.014244 0.19448 -0.00056245 NaN 18.135 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1124200 22222 14240 15076 15363 0.047724127341325584 IESLRALHQ 9 Unmodified _IESLRALHQ_ 0 0 0 REV__ENSG00000141540|ENST00000269346|TTYH2 REV__ENSG00000141540|ENST00000269346|TTYH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.803466796875 2 533.803823 1065.59309 -0.37047 -0.00019776 -2.0234 -0.0010801 -2.3938 -0.0012778 533.8031616631853 33.923 0.1863 33.923 33.822 34.009 0 15 8 2 0 0 0 0.36964 1 17869 17869 13.906 1.3745 1 2880000 + 22223 20544 15077 15364 26233 26233 0.06291950083118536 IESQQQLL 8 Unmodified _IESQQQLL_ 0 0 0 ENSG00000124313|ENST00000642864|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.764404296875 2 479.763832 957.513111 0.80201 0.00038478 -0.48912 -0.00023466 0.3129 0.00015012 479.7636647605871 47.734 0.3776 47.734 47.558 47.936 0 29 17 2 0 0 0 0.72953 1 26233 26233 14.582 2.0501 1 6837100 22224 3776 15078 15365 26234 26234 0.0326546368930849 IETESIMQTF 10 Unmodified _IETESIMQTF_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.787109375 2 599.786647 1197.55874 0.57279 0.00034355 0.84787 0.00050854 1.4207 0.00085209 599.787346193914 64.615 0.43214 64.13 63.949 64.381 -0.48512 37 19 3 0 0 0 0.60623 1 35243 35243 10.824 0 1 1822000 + 22225 20685 15079 15366 26235 26235 -0.03213678910651652 IETHHLIL 8 Unmodified _IETHHLIL_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2843933105469 2 488.284734 974.554916 0.38271 0.00018687 0.45963 0.00022443 0.84234 0.0004113 488.2848840111397 41.106 0.34912 41.104 40.912 41.261 -0.0017929 35 16 3 0 0 0 0.5284 1 21920 21920 32.117 1.8922 1 6207900 + 22226 23527 15080 15367 26236 26236 0.06662064168483539 IETHHLIL 8 Unmodified _IETHHLIL_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.284734 974.554916 -0.38869 -0.00018979 1.2428 0.00060686 0.85415 0.00041707 488.2856085633397 41.098 0.17295 41.098 41.045 41.218 0 -0.03983 0.00094751 NaN 32.117 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1539900 + 22227 23527 15080 15367 0.06662064168483539 IETHHLIL 8 Unmodified _IETHHLIL_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.284734 974.554916 0.059198 2.8906E-05 0.53762 0.00026251 0.59681 0.00029142 488.28476628829253 41.402 0.37479 41.099 40.863 41.238 -0.30304 -0.03899 0.00025881 NaN 32.117 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 15676000 + 22228 23527 15080 15367 0.06662064168483539 IETHHLIL 8 Unmodified _IETHHLIL_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.284734 974.554916 0.38271 0.00018687 0.45963 0.00022443 0.84234 0.0004113 488.2848840111397 41.106 0.34912 41.104 40.912 41.261 -0.0017929 -0.033777 0.00018265 NaN 32.117 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6207900 + 22229 23527 15080 15367 0.06662064168483539 IETNLLMYI 9 Unmodified _IETNLLMYI_ 0 0 0 REV__ENSG00000144668|ENST00000264741|ITGA9 REV__ENSG00000144668|ENST00000264741|ITGA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.300048828125 2 555.299193 1108.58383 0.7137 0.00039632 -0.56461 -0.00031353 0.14909 8.2788E-05 555.2989154716882 74.442 0.37257 74.442 74.21 74.582 0 37 16 3 0 0 0 0.46577 1 41358 41358 9.3474 2.0582 1 1908400 + 22230 20723 15081 15368 26237 26237 0.03388420682586002 IETPMPIVL 9 Unmodified _IETPMPIVL_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7932434082031 2 506.791004 1011.56745 1.1063 0.00056064 0.74298 0.00037654 1.8492 0.00093718 506.79130581396635 40.958 0.70953 36.35 35.874 36.583 -4.6079 121 43 4 0 0 0 0.14602 1 24495 24495 28.487 3.0875 1 147200000 + 22231 22919 15082 15369 26238 26238 0.06213339516477845 IETSEPMSCL 10 Unmodified _IETSEPMSCL_ 0 0 0 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.743408203125 2 555.2463 1108.47805 0.73281 0.00040689 1.2581 0.00069856 1.9909 0.0011055 555.2473936502209 83.317 0.24036 82.819 82.698 82.938 -0.49751 13 9 2 0 0 0 0.23862 1 45622 45622 3.9444 0 1 313200 + 22232 20282 15083 15370 26239 26239 -0.0718528322520342 IETYDIDI 8 Unmodified _IETYDIDI_ 0 0 0 ENSG00000171815|ENST00000306549|PCDHB1 ENSG00000171815|ENST00000306549|PCDHB1 ENSG00000171815|ENST00000306549|PCDHB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2417907714844 2 491.242398 980.470243 NaN NaN NaN NaN NaN NaN NaN 65.964 1 65.964 65.464 66.464 0 0 0 0 0.97444 1 36792 36792 5.2307 0 1 22233 8145 15084 15371 26240 26240 -0.020773511587890425 IEVEDMMVMG 10 Unmodified _IEVEDMMVMG_ 0 0 0 nc|ENSG00000188176|Q2TAL5-2|SMTNL2;ENSG00000188176|ENST00000389313|SMTNL2 nc|ENSG00000188176|Q2TAL5-2|SMTNL2 nc|ENSG00000188176|Q2TAL5-2|SMTNL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8245239257812 2 577.250528 1152.4865 0.62314 0.00035971 -1.2988 -0.00074972 -0.67564 -0.00039002 577.2500829064389 68.015 0.16461 68.04 67.9 68.064 0.025154 11 7 2 0 0 0 0.23862 1 37350 37350 3.9444 1.3669 1 1651100 22234 9636 15085 15372 26241 26241 -0.08364052580213865 IEVHISFG 8 Unmodified _IEVHISFG_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9067993164062 2 451.242535 900.470518 0.69417 0.00031324 0.90504 0.00040839 1.5992 0.00072163 451.2408427822658 59.859 0.14206 59.806 59.694 59.836 -0.053062 12 6 3 0 0 0 8.7369 1 32637 32637 4.756 1.8668 1 2593400 + 22235 18935 15086 15373 26242 26242 0.016301133517231392 IEVIRLATF 9 Unmodified _IEVIRLATF_ 0 0 0 REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3247680664062 2 531.321317 1060.62808 0.73788 0.00039205 0.14524 7.7167E-05 0.88312 0.00046922 531.3212749437763 71.612 0.46393 71.651 71.386 71.85 0.039024 61 21 5 0 0 0 0.30562 1 39349 39349 16.942 6.1184 1 6402800 + 22236 25116 15087 15374 26243 26243 0.1001919289108173 IEWAGRISEEY 11 Unmodified _IEWAGRISEEY_ 0 0 0 nc|ENSG00000284762|O95263-5|PDE8B;nc|ENSG00000284762|O95263-2|PDE8B;nc|ENSG00000284762|O95263-3|PDE8B;nc|ENSG00000284762|O95263-6|PDE8B;nc|ENSG00000284762|O95263-4|PDE8B;ENSG00000113231|ENST00000264917|PDE8B nc|ENSG00000284762|O95263-5|PDE8B nc|ENSG00000284762|O95263-5|PDE8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3296508789062 2 676.827692 1351.64083 0.05869 3.9723E-05 -0.15687 -0.00010617 -0.098178 -6.645E-05 677.3291135894841 60.184 0.61595 59.693 59.372 59.988 -0.49079 43 30 2 0 0 0 0.65846 1 32775 32775 8.1555 2.4237 1 3721100 22237 2947 15088 15375 26244 26244 -0.020924405072946684 IEWEKELY 8 Unmodified _IEWEKELY_ 0 0 0 nc|ENSG00000291090|Q3MJ40|CCDC144BP;ENST00000328495.9_1_17:16623938-16667555:+|nuORF;nc|ENSG00000266302|A2RUR9-3|CCDC144A;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A nc|ENSG00000291090|Q3MJ40|CCDC144BP nc|ENSG00000291090|Q3MJ40|CCDC144BP MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7721557617188 2 555.279315 1108.54408 1.0955 0.00060828 -1.2496 -0.00069388 -0.15415 -8.5594E-05 555.2792190338508 88.753 0.80109 82.577 82.168 82.969 -6.1757 82 44 3 0 0 0 0.63229 1 58293 58293 23.148 1.6114 1 43927000 22238 7954 15089 15376 26245 26245 -0.005853829964735269 IEWKRPTEI 9 Unmodified _IEWKRPTEI_ 0 0 0 ENSG00000162909|ENST00000295006|CAPN2 ENSG00000162909|ENST00000295006|CAPN2 ENSG00000162909|ENST00000295006|CAPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2188720703125 3 391.220513 1170.63971 -0.62356 -0.00024395 -2.6861 -0.0010509 -3.3097 -0.0012948 391.21939185943876 31.927 0.20266 31.927 31.82 32.023 0 14 9 2 0 0 0 0.47846 1 16660 16660 8.7454 0.58988 1 732390 22239 6928 15090 15377 26246 26246 0.06121389914437714 IEWLKYCL 8 Unmodified _IEWLKYCL_ 0 0 0 REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2844848632812 2 534.283346 1066.55214 0.73851 0.00039457 -0.38253 -0.00020438 0.35597 0.00019019 534.2829456653114 39.009 0.58524 34.558 34.361 34.946 -4.4509 55 36 2 0 0 0 0.61462 1 23156 23156 24.674 6.5275 1 33740000 + 22240 27397 15091 15378 26247 26247 0.021524727192854698 IEWRKWKQQKK 11 Unmodified _IEWRKWKQQKK_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.972412109375 3 519.971932 1556.89397 1.257 0.0006536 -1.5405 -0.000801 -0.28347 -0.0001474 519.9713328615354 91.949 0.45348 85.773 85.452 85.906 -6.1757 54 25 3 0 0 0 0.71728 1 60791 60791 2.6312 1.3016 1 18836000 22241 10196 15092 15379 26248 26248 0.1377945673357317 IEYEVPLGH 9 Unmodified _IEYEVPLGH_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7722778320312 2 528.771657 1055.52876 0.39589 0.00020933 0.34647 0.0001832 0.74236 0.00039254 528.771783638927 81.126 0.34412 81.126 80.937 81.281 0 40 16 3 0 0 0 0.49272 1 44978 44978 7.9102 0 1 1707800 + 22242 23814 15093 15380 26249 26249 0.003217502063534994 IEYGNDYENA 10 Unmodified _IEYGNDYENA_ 0 0 0 REV__ENSG00000029559|ENST00000226284|IBSP REV__ENSG00000029559|ENST00000226284|IBSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.250244140625 2 594.2462 1186.47785 0.028941 1.7198E-05 4.3308 0.0025735 4.3597 0.0025907 594.2484568647749 72.113 0.64071 72.113 71.944 72.585 0 65 27 3 0 0 0 0.6067 2 40123 40123;40227 10.8 1.4164 1 4855600 + 22243 17139 15094 15381 26250;26251 26250 -0.10793243629177596 IEYHEAALL 9 Unmodified _IEYHEAALL_ 0 0 0 REV__ENST00000597596.1_1_13:99101286-99101808:+|nuORF REV__ENST00000597596.1_1_13:99101286-99101808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7805786132812 2 529.779482 1057.54441 0.27515 0.00014577 2.7215 0.0014418 2.9967 0.0015876 529.7800876515191 57.907 0.43254 57.417 57.226 57.659 -0.48974 33 20 3 0 0 0 0.1773 1 31537 31537 25.399 4.5281 1 10318000 + 22244 29209 15095 15382 26252 26252 0.017940367233904908 IEYHRINFVY 10 Unmodified _IEYHRINFVY_ 0 0 0 REV__ENSG00000100485|ENST00000216373|SOS2 REV__ENSG00000100485|ENST00000216373|SOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3511962890625 2 677.351137 1352.68772 -0.01983 -1.3432E-05 0.46491 0.00031491 0.44508 0.00030148 677.3510006106953 94.099 0.14684 94.099 94.002 94.149 0 13 8 2 0 0 0 0.72247 1 52007 52007 0.40072 0 1 346780 + 22245 18074 15096 15383 26253 26253 0.025484638344778432 IEYQVYNIFD 10 Unmodified _IEYQVYNIFD_ 0 0 0 REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF REV__ENST00000583408.5_1_17:30207568-30228646:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.814453125 2 652.313886 1302.61322 0.54414 0.00035495 -0.32683 -0.00021319 0.21731 0.00014176 652.3134391638104 39.666 0.46931 35.215 34.98 35.449 -4.4509 70 29 3 0 0 0 0.48505 1 23747 23747 17.113 5.595 1 19857000 + 22246 18624 15097 15384 26254 26254 -0.025983437675677123 IFADTLTLLF 10 Unmodified _IFADTLTLLF_ 0 0 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;ENST00000562200.5_1_16:70543798-70557434:-|nuORF nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3303833007812 2 577.328808 1152.64306 0.92756 0.00053551 2.0949 0.0012095 3.0225 0.001745 577.3300545536346 102.18 0.11218 96.004 95.939 96.052 -6.1757 8 4 3 0 0 0 0.28276 1 68590 68590 42.095 26.247 1 10136000 22247 2097 15098 15385 26255 26255 0.07284639968429474 IFAKKKLLTL 10 Unmodified _IFAKKKLLTL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 587.8988647460938 2 587.899734 1173.78492 NaN NaN NaN NaN NaN NaN NaN 104.04 1 97.865 97.365 98.365 -6.1757 0 0 0 1.0024 1 69702 69702 0.40072 0 1 + 22248 22751 15099 15386 26256 26256 0.20497477781418638 IFAPPPFR 8 Unmodified _IFAPPPFR_ 0 0 0 REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7705688476562 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 4.5438 1 4.4709 3.9709 4.9709 -0.072869 0 0 0 0.97444 1 2246 2246 0.79363 0 1 + 22249 28642 15100 15387 26257 26257 0.05395000347948553 IFCALKTIF 9 Carbamidomethyl (C) _IFC(Carbamidomethyl (C))ALKTIF_ IFC(1)ALKTIF IFC(66)ALKTIF 0 1 0 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 MSMS AL20221201_MKP_PDAC_01 4 557.1574096679688 2 556.81227 1111.60999 NaN NaN NaN NaN NaN NaN NaN 97.735 1 91.559 91.059 92.059 -6.1757 0 0 0 0.030047 1 64771 64771 66.457 20.757 1 22250 5693 15101 15388 26258 26258 581 0.05864734644728742 IFCETRAEW 9 Carbamidomethyl (C) _IFC(Carbamidomethyl (C))ETRAEW_ IFC(1)ETRAEW IFC(86)ETRAEW 0 1 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MSMS AL20221201_MKP_PDAC_01 4 606.27978515625 2 606.279323 1210.54409 NaN NaN NaN NaN NaN NaN NaN 52.158 1 46.423 45.923 46.923 -5.7345 0 0 0 0.014214 1 32908 32908 86.332 42.474 1 22251 977;3739 15102 15389 26259 26259 86 -0.052757062681166644 IFCFHEMY 8 Unmodified _IFCFHEMY_ 0 0 0 REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13 REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.73291015625 2 545.230256 1088.44596 0.23886 0.00013023 2.5131 0.0013702 2.7519 0.0015004 545.7336394442859 80.042 0.45335 80.042 79.797 80.251 0 107 23 6 0 0 0 0.80676 1 44455 44455 2.5775 0.51773 1 6013300 + 22252 29654 15103 15390 26260 26260 -0.09472606117674331 IFCGMILCI 9 Unmodified _IFCGMILCI_ 0 0 0 REV__ENST00000324868.12_1_12:32899940-32900153:-|nuORF REV__ENST00000324868.12_1_12:32899940-32900153:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7566223144531 2 506.755052 1011.49555 0.49987 0.00025331 0.85139 0.00043145 1.3513 0.00068476 506.75579994074246 50.239 0.40139 50.239 50.075 50.477 0 21 18 2 0 0 0 0.3554 1 27705 27705 14.582 0 1 1397400 + 22253 25542 15104 15391 26261 26261 -0.009736144332237018 IFCKQCYGEF 10 Unmodified _IFCKQCYGEF_ 0 0 0 REV__ENSG00000118503|ENST00000612899|TNFAIP3 REV__ENSG00000118503|ENST00000612899|TNFAIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2728271484375 2 619.272652 1236.53075 0.52222 0.00032339 -0.1193 -7.3877E-05 0.40292 0.00024952 619.2724589558374 87.897 0.42517 87.393 87.177 87.602 -0.50423 66 19 4 0 0 0 0.48505 1 48110 48110 17.113 0 1 8395500 + 22254 19155 15105 15392 26262 26262 -0.07805280371758272 IFCKQCYGEF 10 Unmodified _IFCKQCYGEF_ 0 0 0 REV__ENSG00000118503|ENST00000612899|TNFAIP3 REV__ENSG00000118503|ENST00000612899|TNFAIP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 619.272652 1236.53075 0.34823 0.00021565 0.29536 0.00018291 0.64359 0.00039856 619.2726341474705 87.347 0.34386 87.347 87.187 87.531 0 -0.022951 0.00027629 NaN 17.113 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1844300 + 22255 19155 15105 15392 -0.07805280371758272 IFCNVNNPCF 10 Unmodified _IFCNVNNPCF_ 0 0 0 ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant;ENSG00000198691|ENST00000370225|ABCA4 ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant ABCA4|p.V2124Sfs*21|1|0.35|ENSG00000198691|chr1:94001018-94001018|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.258056640625 2 585.757169 1169.49979 0.42422 0.00024849 -1.5171 -0.00088868 -1.0929 -0.00064019 585.7562563114233 83.22 0.23258 82.722 82.557 82.789 -0.49751 16 8 2 0 0 0 0.69064 1 45557 45557 3.9444 0.3479 1 487250 22256 0 15106 15393 26263 26263 -0.07818433685974924 IFCTTLPM 8 Unmodified _IFCTTLPM_ 0 0 0 ENST00000499601.2_1_5:179287382-179287505:+|nuORF ENST00000499601.2_1_5:179287382-179287505:+|nuORF ENST00000499601.2_1_5:179287382-179287505:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 463.2322387695312 2 463.229725 924.444896 NaN NaN NaN NaN NaN NaN NaN 100.93 1 94.756 94.256 95.256 -6.1757 0 0 0 0.85111 1 67621 67621 20.871 0 1 22257 14435 15107 15394 26264 26264 -0.020348204865740627 IFDAADFCPE 10 Unmodified _IFDAADFCPE_ 0 0 0 REV__nc|ENSG00000171766|P50440-3|GATM REV__nc|ENSG00000171766|P50440-3|GATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.4954528808594 3 376.495314 1126.46411 0.6667 0.00025101 -0.31113 -0.00011714 0.35556 0.00013387 376.4952196747954 62.509 0.37206 62.022 61.768 62.14 -0.48764 42 17 3 0 0 0 0.62068 1 33993 33993 5.7834 0 1 7525300 + 22258 22599 15108 15395 26265 26265 -0.0940619266198155 IFDEAEKL 8 Unmodified _IFDEAEKL_ 0 0 0 nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A;ENST00000472001.1_1_1:179057051-179060848:+|nuORF;ENST00000495145.1_1_1:179054938-179057273:+|nuORF;nc|ENSG00000186283|Q9H497-3|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7525024414062 2 482.752933 963.491313 -0.10434 -5.0368E-05 0.42177 0.00020361 0.31743 0.00015324 482.75302982448983 44.586 0.25067 44.586 44.397 44.647 0 25 12 3 0 0 0 0.29252 1 24217 24217 56.177 27.69 1 28527000 22259 9467 15109 15396 26266 26266 0.008106589407248066 IFDEAEKL 8 Unmodified _IFDEAEKL_ 0 0 0 nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A;ENST00000472001.1_1_1:179057051-179060848:+|nuORF;ENST00000495145.1_1_1:179054938-179057273:+|nuORF;nc|ENSG00000186283|Q9H497-3|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7528381347656 2 482.752933 963.491313 1.0473 0.00050559 -0.9867 -0.00047633 0.0606 2.9255E-05 482.7522119026385 51.19 0.31868 45.541 45.337 45.656 -5.649 31 19 2 0 0 0 0.29252 1 32122 32122 56.177 18.203 1 57995000 22260 9467 15109 15396 26267 26267 0.008106589407248066 IFDEFRTVL 9 Unmodified _IFDEFRTVL_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3087768554688 2 570.308406 1138.60226 0.53648 0.00030596 -0.37006 -0.00021105 0.16642 9.4913E-05 570.3083448457531 76.049 0.2697 75.569 75.414 75.684 -0.47945 20 11 2 0 0 0 0.30202 1 41657 41657 17.113 6.289 1 909530 22261 7273 15110 15397 26268 26268 0.03850298648808348 IFDEVHCL 8 Carbamidomethyl (C) _IFDEVHC(Carbamidomethyl (C))L_ IFDEVHC(1)L IFDEVHC(43)L 0 1 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.744140625 2 516.744585 1031.47462 0.36117 0.00018663 0.7134 0.00036865 1.0746 0.00055528 516.7445041572273 51.677 0.21268 51.677 51.54 51.753 0 15 9 2 0 0 0 0.41521 1 28551 28551 42.968 12.743 1 2262900 22262 4951 15111 15398 26269 26269 513 -0.039861652169065565 IFDEVHCL 8 Carbamidomethyl (C) _IFDEVHC(Carbamidomethyl (C))L_ 0 1 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.744585 1031.47462 0.51852 0.00026794 0.68818 0.00035561 1.2067 0.00062355 516.7448460337971 52.206 0.18301 51.773 51.688 51.871 -0.43367 0.04793 -1.076E-05 NaN 42.968 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1094400 22263 4951 15111 15398 513 -0.039861652169065565 IFDEVHYL 8 Unmodified _IFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2610473632812 2 518.260925 1034.5073 0.59906 0.00031047 -0.75247 -0.00038998 -0.15341 -7.9506E-05 518.26052794057 60.847 0.52029 60.847 60.603 61.123 0 59 19 4 0 0 0 0.35156 2 33884 33884;33990 49.669 0 1 22275000 22264 8967 15112 15399 26270;26271 26270 -0.00857634822386899 IFDEVHYL 8 Unmodified _IFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2605590820312 2 518.260925 1034.5073 -0.27841 -0.00014429 0.89706 0.00046491 0.61865 0.00032062 518.2612861692637 61.38 0.46259 60.891 60.674 61.137 -0.48932 59 21 4 0 0 0 0.35156 2 33377 33377;33479 49.669 0 1 28921000 22265 8967 15112 15399 26272;26273 26272 -0.00857634822386899 IFDEVHYL 8 Unmodified _IFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2614135742188 2 518.260925 1034.5073 0.35586 0.00018443 0.32578 0.00016884 0.68164 0.00035327 518.2610664397132 60.96 0.22327 60.916 60.784 61.008 -0.04351 17 10 2 0 0 0 0.41521 1 33274 33274 42.968 0 1 3763200 22266 8967 15112 15399 26274 26274 -0.00857634822386899 IFDEVHYL 8 Unmodified _IFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2604370117188 2 518.260925 1034.5073 0.66162 0.00034289 -0.55125 -0.00028569 0.11037 5.7201E-05 518.2607972273056 67.645 0.51796 61.469 61.236 61.754 -6.1757 75 29 3 0 0 0 0.2655 2 43997 43997;44126 59.795 0 1 97121000 22267 8967 15112 15399 26275;26276 26275 -0.00857634822386899 IFDFTCMRF 9 Carbamidomethyl (C),Oxidation (M) _IFDFTC(Carbamidomethyl (C))M(Oxidation (M))RF_ IFDFTC(1)MRF IFDFTCM(1)RF IFDFTC(52)MRF IFDFTCM(52)RF 0 1 1 ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.778564453125 2 626.778102 1251.54165 0.62166 0.00038965 -0.43388 -0.00027195 0.18778 0.0001177 626.7784849713735 67.2 0.31216 67.218 67.082 67.394 0.018036 47 15 4 0 0 0 0.036857 1 36861 36861 51.63 30.093 1 9578500 22268 12872 15113 15400 26277 26277 980 1755 -0.07405877997439347 IFDFTCMRF 9 Carbamidomethyl (C),Oxidation (M) _IFDFTC(Carbamidomethyl (C))M(Oxidation (M))RF_ IFDFTC(1)MRF IFDFTCM(1)RF IFDFTC(44)MRF IFDFTCM(44)RF 0 1 1 ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.7796630859375 2 626.778102 1251.54165 0.40846 0.00025601 0.64378 0.00040351 1.0522 0.00065952 626.7801160523733 67.632 0.45639 67.65 67.414 67.87 0.018036 51 22 4 0 0 0 0.05483 1 37079 37079 43.772 23.319 1 11341000 22269 12872 15113 15400 26278 26278 980 1755 -0.07405877997439347 IFDFTCMRF 9 Carbamidomethyl (C) _IFDFTC(Carbamidomethyl (C))MRF_ IFDFTC(1)MRF IFDFTC(150)MRF 0 1 0 ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF ENST00000400227.7_1_20:478366-478399:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.78125 2 618.780644 1235.54674 1.3898 0.00085996 -1.3404 -0.00082941 0.049369 3.0549E-05 618.7803825985965 98.279 0.149 92.103 92.027 92.176 -6.1757 31 9 4 0 0 0 0.00035873 1 65148 65148 147.06 112.96 1 69937000 22270 12872 15113 15401 26279 26279 980 -0.061615741348305164 IFDGNVAHI 9 Unmodified _IFDGNVAHI_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2586059570312 2 493.258717 984.50288 0.64799 0.00031963 1.5494 0.00076424 2.1974 0.0010839 493.2597741903727 49.171 0.36422 48.799 48.539 48.903 -0.37171 37 17 4 0 0 0 0.022193 1 26411 26411 61.357 13.012 1 4794200 22271 6216 15114 15402 26280 26280 0.010009007547182591 IFDGNVAHI 9 Unmodified _IFDGNVAHI_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2608947753906 2 493.258717 984.50288 1.079 0.00053221 1.1552 0.00056984 2.2342 0.001102 493.25906118594025 55.567 0.29261 49.646 49.507 49.8 -5.9211 28 17 2 0 0 0 0.031062 1 35357 35357 54.774 7.8527 1 17936000 22272 6216 15114 15402 26281 26281 0.010009007547182591 IFDLGGGTF 9 Unmodified _IFDLGGGTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 926.4635009765625 1 926.46181 925.454533 0.78554 0.00072777 0.78388 0.00072623 1.5694 0.001454 926.4624450168159 80.51 0.47451 80.018 79.752 80.227 -0.49247 52 18 4 0 0 0 0.0018186 2 44104 44011;44104 133.7 70.139 1 11364000 22273 10277;2688;8286;13095 15115 15403 26282;26283 26283 -0.011175928851798744 IFDLGGGTF 9 Unmodified _IFDLGGGTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 926.4620971679688 1 926.46181 925.454533 0.39864 0.00036933 0.43204 0.00040027 0.83069 0.0007696 926.4621223966515 79.919 0.27023 79.977 79.824 80.094 0.057587 29 10 4 0 0 0 0.0082281 2 44224 44116;44224 92.822 38.049 1 7427600 22274 10277;2688;8286;13095 15115 15403 26284;26285 26285 -0.011175928851798744 IFDLGGGTF 9 Unmodified _IFDLGGGTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.4613037109375 1 926.46181 925.454533 1.1234 0.0010407 -3.5424 -0.0032819 -2.4191 -0.0022412 926.4588101417781 88.475 0.3988 82.299 82.113 82.512 -6.1757 50 21 3 0 0 0 0.047196 1 58391 58391 46.021 7.8698 1 57219000 22275 10277;2688;8286;13095 15115 15403 26286 26286 -0.011175928851798744 IFDLGGGTF 9 Unmodified _IFDLGGGTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 926.46181 925.454533 0.30107 0.00027893 -0.76165 -0.00070564 -0.46058 -0.00042671 926.4613675845233 79.992 0.29376 79.992 79.864 80.158 0 -0.0035222 -0.0011994 NaN 133.7 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 645910 22276 10277;2688;8286;13095 15115 15403 -0.011175928851798744 IFDLMDAKA 9 Oxidation (M) _IFDLM(Oxidation (M))DAKA_ IFDLM(1)DAKA IFDLM(50)DAKA 0 0 1 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2593383789062 2 520.260068 1038.50558 0.37928 0.00019733 -0.8972 -0.00046678 -0.51791 -0.00026945 520.2594644633642 48.294 0.24815 47.923 47.791 48.039 -0.37171 29 12 3 0 0 0 0.040683 1 25892 25892 49.554 11.58 1 8106100 22277 6111 15116 15404 26287 26287 1088 -0.012130119026551256 IFDLMDAKA 9 Oxidation (M) _IFDLM(Oxidation (M))DAKA_ IFDLM(1)DAKA IFDLM(42)DAKA 0 0 1 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7615966796875 2 520.260068 1038.50558 0.20647 0.00010742 -1.4074 -0.00073222 -1.2009 -0.0006248 520.2589070563215 48.741 0.26086 48.369 48.278 48.539 -0.37172 24 14 2 0 0 0 0.062454 1 26165 26165 41.956 21.541 1 7117800 22278 6111 15116 15404 26288 26288 1088 -0.012130119026551256 IFDLNDQF 8 Unmodified _IFDLNDQF_ 0 0 0 REV__MAPRE2|p.R143C|1|0.16|ENSG00000166974|chr18:35101976-35101976|C/T|missense_variant REV__MAPRE2|p.R143C|1|0.16|ENSG00000166974|chr18:35101976-35101976|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.765869140625 2 506.242732 1010.47091 0.34119 0.00017272 2.3281 0.0011786 2.6693 0.0013513 506.2441433568434 65.205 0.17891 65.205 65.117 65.296 0 9 6 2 0 0 0 8.7369 1 36394 36394 10.183 0 1 535010 + 22279 22170 15117 15405 26289 26289 -0.03390511719089773 IFDLQKTSL 9 Unmodified _IFDLQKTSL_ 0 0 0 nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-6|MCTP2 nc|ENSG00000140563|Q6DN12-2|MCTP2 nc|ENSG00000140563|Q6DN12-2|MCTP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8025512695312 2 532.802957 1063.59136 NaN NaN NaN NaN NaN NaN NaN 57.918 1 57.852 57.352 58.352 -0.066036 0 0 0 0.010041 1 31534 31534 92.653 14.669 1 22280 5254 15118 15406 26290 26290 0.062108962745242025 IFDLQSNTVL 10 Unmodified _IFDLQSNTVL_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3118896484375 2 575.311146 1148.60774 0.6652 0.0003827 1.1178 0.00064309 1.783 0.0010258 575.3111845923127 79.152 0.38608 78.666 78.461 78.848 -0.48596 36 16 3 0 0 0 0.11824 1 43362 43362 43.772 10.987 1 4692900 22281 3700 15119 15407 26291 26291 0.03937977440614304 IFDLQSNTVL 10 Unmodified _IFDLQSNTVL_ 0 0 0 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 ENSG00000123352|ENST00000552918|SPATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.31103515625 2 575.311146 1148.60774 0.51484 0.0002962 1.3986 0.00080463 1.9134 0.0011008 575.311101794211 78.586 0.27364 78.638 78.532 78.806 0.052452 17 10 2 0 0 0 0.18021 1 43419 43419 36.127 3.3413 1 2945100 22282 3700 15119 15407 26292 26292 0.03937977440614304 IFDNTFSRF 9 Unmodified _IFDNTFSRF_ 0 0 0 ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7822875976562 2 573.782556 1145.55056 0.32942 0.00018902 0.39803 0.00022838 0.72745 0.0004174 573.7824686858751 62.026 0.25188 61.993 61.888 62.14 -0.032787 29 12 3 0 0 0 0.012668 1 33873 33873 72.968 26.947 1 7688100 22283 7079 15120 15408 26293 26293 -0.016394450450889053 IFDPLEIIL 9 Unmodified _IFDPLEIIL_ 0 0 0 nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 nc|ENSG00000100425|O95696|BRD1 nc|ENSG00000100425|O95696|BRD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.3168334960938 2 536.818076 1071.6216 1.0947 0.00058764 0.19991 0.00010731 1.2946 0.00069495 536.8179381539092 102.59 0.11864 96.416 96.337 96.456 -6.1757 40 18 3 0 0 0 0.15672 1 68823 68823 26.884 0 1 42379000 22284 1824 15121 15409 26294 26294 0.08865254939723854 IFDPQNPDENE 11 Unmodified _IFDPQNPDENE_ 0 0 0 ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL ENSG00000099942|ENST00000354336|CRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.2820434570312 2 659.283314 1316.55207 -0.072646 -4.7894E-05 0.047773 3.1496E-05 -0.024873 -1.6398E-05 659.2829866309781 37.531 0.23571 37.531 37.389 37.625 0 20 12 2 0 0 0 0.15597 1 19990 19990 51.415 31.001 1 2815800 22285 1723 15122 15410 26295 26295 -0.09353900537644222 IFDPTRECM 9 Carbamidomethyl (C),Oxidation (M) _IFDPTREC(Carbamidomethyl (C))M(Oxidation (M))_ IFDPTREC(1)M IFDPTRECM(1) IFDPTREC(46)M IFDPTRECM(46) 0 1 1 ENST00000567228.1_1_16:67229659-67232023:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF;ENSG00000205250|ENST00000379378|E2F4 ENST00000567228.1_1_16:67229659-67232023:+|nuORF ENST00000567228.1_1_16:67229659-67232023:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7573852539062 2 592.757366 1183.50018 -0.20172 -0.00011957 0.51225 0.00030364 0.31053 0.00018407 592.7579684153684 32.781 0.31066 32.622 32.451 32.762 -0.15918 34 12 3 0 0 0 0.047788 1 17102 17102 45.7 32.657 1 11520000 22286 10355 15123 15411 26296 26296 933 1686 -0.08423058756761748 IFDPTRECM 9 Carbamidomethyl (C),Oxidation (M) _IFDPTREC(Carbamidomethyl (C))M(Oxidation (M))_ IFDPTREC(1)M IFDPTRECM(1) IFDPTREC(93)M IFDPTRECM(93) 0 1 1 ENST00000567228.1_1_16:67229659-67232023:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF;ENSG00000205250|ENST00000379378|E2F4 ENST00000567228.1_1_16:67229659-67232023:+|nuORF ENST00000567228.1_1_16:67229659-67232023:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7562866210938 2 592.757366 1183.50018 0.84286 0.00049961 -1.4847 -0.00088004 -0.64179 -0.00038043 592.7570331984537 37.958 0.49427 33.589 33.32 33.814 -4.3689 102 29 5 0 0 0 0.0081887 3 22199 22199;22325;22460 93.166 55.192 1 103550000 22287 10355 15123 15411 26297;26298;26299 26297 933 1686 -0.08423058756761748 IFDPTRECM 9 Carbamidomethyl (C) _IFDPTREC(Carbamidomethyl (C))M_ IFDPTREC(1)M IFDPTREC(66)M 0 1 0 ENST00000567228.1_1_16:67229659-67232023:+|nuORF;ENST00000567007.5_1_16:67226831-67232023:+|nuORF;ENSG00000205250|ENST00000379378|E2F4 ENST00000567228.1_1_16:67229659-67232023:+|nuORF ENST00000567228.1_1_16:67229659-67232023:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7605590820312 2 584.759909 1167.50526 1.0639 0.00062212 -0.44347 -0.00025932 0.62042 0.0003628 584.76007229807 50.134 0.52342 44.595 44.316 44.839 -5.5391 110 33 4 0 0 0 0.017075 2 31255 31255;31391 66.457 33.671 1 211340000 22288 10355 15123 15412 26300;26301 26300 933 -0.07178754894152917 IFDPVKQQF 9 Unmodified _IFDPVKQQF_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3031616210938 2 561.303124 1120.5917 0.39641 0.00022251 3.3683 0.0018906 3.7647 0.0021131 561.3063524091119 54.134 0.31852 54.067 53.962 54.28 -0.066936 26 15 3 0 0 0 0.042911 1 29377 29377 48.346 16.229 1 2647600 22289 8091 15124 15413 26302 26302 0.036223159943801875 IFDQSGTYL 9 Unmodified _IFDQSGTYL_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2562866210938 2 522.25584 1042.49713 0.66837 0.00034906 -0.92982 -0.00048561 -0.26146 -0.00013655 522.2554979645538 59.668 0.43714 59.668 59.465 59.902 0 40 19 3 0 0 0 0.30562 2 33198 33198;33306 16.942 5.8278 1 25484000 22290 2703 15125 15414 26303;26304 26303 -0.022422425476179342 IFDQSGTYL 9 Unmodified _IFDQSGTYL_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2545166015625 2 522.25584 1042.49713 -0.024139 -1.2607E-05 -0.30856 -0.00016115 -0.3327 -0.00017376 522.2557228832619 60.262 0.42335 59.771 59.545 59.968 -0.49079 60 20 4 0 0 0 0.07916 2 32730 32730;32838 37.974 11.09 1 66386000 22291 2703 15125 15414 26305;26306 26305 -0.022422425476179342 IFDQSGTYL 9 Unmodified _IFDQSGTYL_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7538452148438 2 522.25584 1042.49713 0.21946 0.00011461 -3.4947 -0.0018251 -3.2752 -0.0017105 522.2557143903286 59.859 0.42047 59.806 59.518 59.938 -0.053062 43 20 3 0 0 0 0.37804 1 32605 32605 13.508 1.2672 1 9704200 22292 2703 15125 15414 26307 26307 -0.022422425476179342 IFDQSGTYL 9 Unmodified _IFDQSGTYL_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2561645507812 2 522.25584 1042.49713 0.84205 0.00043977 -0.090506 -4.7267E-05 0.75154 0.0003925 522.2557542848808 68.405 0.61519 62.229 61.94 62.556 -6.1757 105 36 4 0 0 0 0.12424 3 44752 44496;44623;44752 30.637 8.8899 1 283840000 22293 2703 15125 15414 26308;26309;26310 26310 -0.022422425476179342 IFDSKVTEI 9 Unmodified _IFDSKVTEI_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2882080078125 2 526.28714 1050.55973 0.66737 0.00035123 -0.3012 -0.00015852 0.36617 0.00019271 526.2870114913335 49.204 0.48736 49.204 49.023 49.51 0 64 22 5 0 0 0 0.013609 1 27010 27010 70.332 22.583 1 138560000 22294 3031 15126 15415 26311 26311 0.03646903520575506 IFDSKVTEI 9 Unmodified _IFDSKVTEI_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2877197265625 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 49.133 1 49.09 48.59 49.59 -0.04369 0 0 0 0.020292 1 26538 26538 78.06 21.883 1 22295 3031 15126 15415 26312 26312 0.03646903520575506 IFDSSDLSF 9 Unmodified _IFDSSDLSF_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7402954101562 2 515.740022 1029.46549 0.37452 0.00019315 2.7524 0.0014195 3.1269 0.0016127 515.741563851199 82.346 0.45532 76.17 75.917 76.372 -6.1757 43 24 2 0 0 0 0.023164 1 54079 54079 60.39 22.238 1 15047000 22296 3032 15127 15416 26313 26313 -0.048062353015666304 IFDSTAVLL 9 Unmodified _IFDSTAVLL_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.551513671875 1 978.550625 977.543348 0.43275 0.00042347 -0.49026 -0.00047974 -0.057503 -5.6269E-05 978.549756621513 83.009 0.39137 82.511 82.306 82.698 -0.49751 36 15 3 0 0 0 0.042911 1 45490 45490 48.346 6.2513 1 2801800 22297 6719 15128 15417 26314 26314 0.053678223544807224 IFDSTAVLL 9 Unmodified _IFDSTAVLL_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7789611816406 2 489.778951 977.543348 0.69281 0.00033932 0.066183 3.2415E-05 0.75899 0.00037174 489.778592888215 82.999 0.48315 82.501 82.306 82.789 -0.49751 53 19 4 0 0 0 0.18465 1 45491 45491 24.674 1.5255 1 4537200 22298 6719 15128 15417 26315 26315 0.053678223544807224 IFDSTAVLL 9 Unmodified _IFDSTAVLL_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MSMS AL20221201_MKP_PDAC_01 4 489.7793273925781 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 91.237 1 85.061 84.561 85.561 -6.1757 0 0 0 0.060495 1 60308 60308 53.576 6.6547 1 22299 6719 15128 15417 26316 26316 0.053678223544807224 IFDVHTKI 8 Unmodified _IFDVHTKI_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MSMS AL20221201_MKP_PDAC_01 4 486.7803649902344 2 486.779285 971.544017 NaN NaN NaN NaN NaN NaN NaN 46.589 1 41.508 41.008 42.008 -5.0805 0 0 0 0.26064 1 28817 28817 69.105 10.426 1 22300 3031 15129 15418 26317 26317 0.057106617941940385 IFDVHVHEV 9 Unmodified _IFDVHVHEV_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.52587890625 3 365.525825 1093.55564 -0.11215 -4.0993E-05 -0.36016 -0.00013165 -0.47231 -0.00017264 365.52570311747274 43.747 0.23997 43.747 43.605 43.844 0 23 12 2 0 0 0 0.012148 1 23766 23766 57.722 31.454 1 34361000 22301 9843 15130 15419 26318 26318 0.012608588175226032 IFDVHVHEV 9 Unmodified _IFDVHVHEV_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.525634765625 3 365.525825 1093.55564 -0.019532 -7.1393E-06 0.40945 0.00014966 0.38992 0.00014253 365.5259162590048 43.917 0.19036 43.602 43.502 43.692 -0.31585 15 10 2 0 0 0 0.019303 1 23396 23396 49.554 23.286 1 46798000 22302 9843 15130 15419 26319 26319 0.012608588175226032 IFDVHVHEV 9 Unmodified _IFDVHVHEV_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5259704589844 3 365.525825 1093.55564 1.3473 0.00049246 -0.24022 -8.7806E-05 1.107 0.00040465 365.5258184703385 49.195 0.44927 43.799 43.572 44.022 -5.3961 72 29 3 0 0 0 0.008678 2 30590 30590;30723 70.332 33.826 1 152560000 22303 9843 15130 15419 26320;26321 26320 0.012608588175226032 IFDVHVHEV 9 Unmodified _IFDVHVHEV_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7841186523438 2 547.785099 1093.55564 0.62843 0.00034424 2.9302 0.0016051 3.5586 0.0019494 547.7859426786043 49.165 0.25213 43.769 43.704 43.956 -5.3961 26 16 2 0 0 0 0.0082485 2 30716 30685;30716 96.285 51.878 1 67802000 22304 9843 15130 15419 26322;26323 26323 0.012608588175226032 IFDYIVVSCE 10 Unmodified _IFDYIVVSCE_ 0 0 0 REV__nc|ENSG00000051341|O75417-2|POLQ REV__nc|ENSG00000051341|O75417-2|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2844848632812 2 594.286282 1186.55801 0.71206 0.00042317 -1.2194 -0.00072469 -0.50737 -0.00030153 594.2851046113132 67.878 0.47125 67.395 67.165 67.637 -0.48219 54 21 5 0 0 0 0.18021 1 37134 37134 36.127 5.4905 1 3002700 + 22305 17266 15131 15420 26324 26324 -0.027804735596873797 IFEAPGFE 8 Unmodified _IFEAPGFE_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 909.4347534179688 1 909.435261 908.427984 -0.97369 -0.00088551 2.2282 0.0020264 1.2545 0.0011409 909.4361999927357 78.223 0.1461 77.737 77.632 77.778 -0.48596 8 5 2 0 0 0 0.67481 1 42838 42838 19.439 4.8573 1 374690 + 22306 23945 15132 15421 26325 26325 -0.02989281776513053 IFEFFRFLNWR 11 Unmodified _IFEFFRFLNWR_ 0 0 0 ENST00000265339.6_1_5:133726266-133726425:+|nuORF ENST00000265339.6_1_5:133726266-133726425:+|nuORF ENST00000265339.6_1_5:133726266-133726425:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 787.9197387695312 2 787.916978 1573.8194 NaN NaN NaN NaN NaN NaN NaN 86.319 1 86.38 85.88 86.88 0.061638 0 0 0 0.63856 1 47911 47911 19.362 2.249 1 22307 11328 15133 15422 26326 26326 0.05544693922229271 IFENHLVFL 9 Unmodified _IFENHLVFL_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|251|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|251|1|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|251|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.313720703125 2 566.313492 1130.61243 2.5802 0.0014612 -0.34989 -0.00019815 2.2303 0.0012631 566.3126770691091 96.536 0.36224 96.529 96.361 96.724 -0.007019 23 12 3 0 0 0 0.15882 1 53617 53617 36.127 9.2434 1 2765200 22308 15920 15134 15423 26327 26327 0.052349063740621204 IFFATCLQP 9 Unmodified _IFFATCLQP_ 0 0 0 ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B ENSG00000173214|ENST00000671876|MFSD4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.26806640625 2 520.267696 1038.52084 0.27882 0.00014506 1.9312 0.0010047 2.21 0.0011498 520.2693830343184 98.82 0.21083 92.645 92.478 92.689 -6.1757 26 15 2 0 0 0 0.047788 1 65665 65665 45.7 9.6554 1 259020000 22309 8300 15135 15424 26328 26328 0.0031189968519811373 IFFENHPYF 9 Unmodified _IFFENHPYF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2877197265625 2 607.287474 1212.5604 0.23203 0.00014091 -1.3269 -0.00080583 -1.0949 -0.00066492 607.2865995900629 70.48 0.38774 70.003 69.798 70.186 -0.47736 107 34 4 0 0 0 0.011671 2 38496 38496;38602 97.075 64.289 1 36190000 22310 6530 15136 15425 26329;26330 26329 -0.03738257039731252 IFFENHPYF 9 Unmodified _IFFENHPYF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.7893676757812 2 607.287474 1212.5604 0.32216 0.00019564 -0.50325 -0.00030562 -0.18109 -0.00010997 607.2870712564508 69.823 1.039 69.853 69.592 70.631 0.030914 168 51 6 0 0 0 0.017075 3 38294 38294;38403;38511 85.357 59.089 1 410780000 22311 6530 15136 15425 26331;26332;26333 26331 -0.03738257039731252 IFFENHPYF 9 Unmodified _IFFENHPYF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2877197265625 2 607.287474 1212.5604 0.51759 0.00031433 0.1032 6.2669E-05 0.62079 0.000377 607.2874469328344 85.86 1.8159 79.685 78.657 80.473 -6.1757 318 105 4 0 0 0 0.011671 9 56588 56019;56073;56198;56327;56460;56588;56716;56845;56970 97.075 64.289 1 339790000 22312 6530 15136 15425 26334;26335;26336;26337;26338;26339;26340;26341;26342 26339 -0.03738257039731252 IFFENHPYF 9 Unmodified _IFFENHPYF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MSMS AL20221201_MKP_PDAC_01 4 607.2839965820312 2 607.287474 1212.5604 NaN NaN NaN NaN NaN NaN NaN 86.612 1 80.436 79.936 80.936 -6.1757 0 0 0 0.076083 1 57098 57098 64.236 29.835 1 22313 6530 15136 15425 26343 26343 -0.03738257039731252 IFFGGLVFKF 10 Unmodified _IFFGGLVFKF_ 0 0 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8386840820312 2 587.836603 1173.65865 2.3774 0.0013975 1.4607 0.00085866 3.8381 0.0022562 587.8373103671883 100.04 0.24876 100 99.934 100.18 -0.036301 17 8 3 0 0 0 0.18021 1 55582 55582 36.127 7.6402 1 11036000 22314 9183 15137 15426 26344 26344 0.07876971276095901 IFFGGLVFKF 10 Unmodified _IFFGGLVFKF_ 0 0 0 ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A ENST00000480937.5_1_1:25666968-25687193:+|nuORF ENST00000480937.5_1_1:25666968-25687193:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 587.8368530273438 2 587.836603 1173.65865 NaN NaN NaN NaN NaN NaN NaN 101.15 1 94.975 94.475 95.475 -6.1757 0 0 0 0.3465 1 67810 67810 34.402 10.381 1 22315 9183 15137 15426 26345 26345 0.07876971276095901 IFFPHTDP 8 Unmodified _IFFPHTDP_ 0 0 0 REV__ENST00000388996.9_2_8:133187787-133196552:-|nuORF REV__ENST00000388996.9_2_8:133187787-133196552:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2409973144531 2 487.242535 972.470518 0.78454 0.00038226 -2.5048 -0.0012205 -1.7203 -0.00083819 487.24141242354045 58.645 0.19292 58.585 58.486 58.679 -0.060719 13 9 2 0 0 0 0.80624 1 31953 31953 2.8892 0.31174 1 2279800 + 22316 26358 15138 15427 26346 26346 -0.016818866483049533 IFFTGSAGTGK 11 Unmodified _IFFTGSAGTGK_ 0 0 0 nc|ENSG00000140451|Q9H611-4|PIF1;ENSG00000140451|ENST00000559239|PIF1;nc|ENSG00000140451|Q9H611-3|PIF1 nc|ENSG00000140451|Q9H611-4|PIF1 nc|ENSG00000140451|Q9H611-4|PIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.284912109375 2 543.284931 1084.55531 0.28363 0.00015409 -0.11969 -6.5024E-05 0.16394 8.9066E-05 543.2848261149599 59.581 0.62378 59.528 59.273 59.897 -0.053059 85 31 4 0 0 0 0.11933 1 32478 32478 40.239 3.733 1 234690000 22317 5235 15139 15428 26347 26347 0.016414390976706272 IFGALIFK 8 Unmodified _IFGALIFK_ 0 0 0 ENSG00000135077|ENST00000307851|HAVCR2 ENSG00000135077|ENST00000307851|HAVCR2 ENSG00000135077|ENST00000307851|HAVCR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7845764160156 2 454.783839 907.553125 0.71127 0.00032347 0.14922 6.7861E-05 0.86048 0.00039133 454.7837806322801 78.67 0.35815 78.722 78.553 78.911 0.052452 27 13 3 0 0 0 0.44122 1 43421 43421 40.449 8.3316 1 6053300 22318 4668 15140 15429 26348 26348 0.09565055150505941 IFGALKSLF 9 Unmodified _IFGALKSLF_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20221201_MKP_PDAC_01 4 498.2998657226562 2 498.299853 994.585153 NaN NaN NaN NaN NaN NaN NaN 99.31 1 93.134 92.634 93.634 -6.1757 0 0 0 0.043758 1 66093 66093 60.39 6.814 1 + 22319 23727 15141 15430 26349 26349 0.08764422833644403 IFGLEFLMV 9 Unmodified _IFGLEFLMV_ 0 0 0 TMEM37|p.L174*|1|0.18|ENSG00000171227|chr2:119437386-119437386|C/-|frameshift_variant;ENSG00000171227|ENST00000306406|TMEM37;ENST00000465296.1_1_2:120189667-120195013:+|nuORF TMEM37|p.L174*|1|0.18|ENSG00000171227|chr2:119437386-119437386|C/-|frameshift_variant TMEM37|p.L174*|1|0.18|ENSG00000171227|chr2:119437386-119437386|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.294189453125 2 534.793546 1067.57254 1.0036 0.0005367 -1.1103 -0.00059378 -0.10672 -5.7076E-05 534.7933469350644 58.321 0.512 52.247 52.015 52.527 -6.0745 76 27 3 0 0 0 0.087258 1 37263 37263 36.044 3.2585 1 105840000 22320 8082 15142 15431 26350 26350 0.041456433790926894 IFGNYIERLWA 11 Unmodified _IFGNYIERLWA_ 0 0 0 ENST00000475931.1_1_3:52836712-52838129:+|nuORF;nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3 ENST00000475931.1_1_3:52836712-52838129:+|nuORF ENST00000475931.1_1_3:52836712-52838129:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7616577148438 3 461.24695 1380.71902 0.36006 0.00016608 2.5469 0.0011747 2.9069 0.0013408 461.24828826406406 73.386 0.15765 73.43 73.361 73.519 0.043983 9 6 2 0 0 0 0.30303 1 40413 40413 5.4027 0.35519 1 493240 22321 6844 15143 15432 26351 26351 0.04389036868565199 IFGVIIDTF 9 Unmodified _IFGVIIDTF_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2394409179688 2 512.789318 1023.56408 0.21512 0.00011031 -1.2671 -0.00064976 -1.052 -0.00053945 512.7884458071917 99.908 0.11662 99.751 99.669 99.785 -0.1575 5 3 2 0 0 0 0.17666 1 54549 54549 19.439 9.2556 1 782660 22322 1673;3680;6083 15144 15433 26352 26352 0.053244127341372405 IFGVIIDTF 9 Unmodified _IFGVIIDTF_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.788330078125 2 512.789318 1023.56408 0.99257 0.00050898 -0.81136 -0.00041606 0.18121 9.292E-05 512.7888251810492 101.21 0.13499 95.039 94.956 95.091 -6.1757 25 8 4 0 0 0 0.068777 1 67850 67850 40.449 4.4044 1 222330000 22323 1673;3680;6083 15144 15433 26353 26353 0.053244127341372405 IFGVIIDTF 9 Unmodified _IFGVIIDTF_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.789318 1023.56408 3.1306 0.0016054 -2.6247 -0.0013459 0.50591 0.00025942 512.7879816388242 99.793 0.16091 99.757 99.666 99.827 -0.036301 0.0030717 -0.00026571 NaN 19.439 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 19658000 22324 1673;3680;6083 15144 15433 0.053244127341372405 IFHDISLRF 9 Unmodified _IFHDISLRF_ 0 0 0 ENSG00000144029|ENST00000272418|MRPS5;ENST00000461916.5_1_2:95753104-95767538:-|nuORF ENSG00000144029|ENST00000272418|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2136840820312 3 383.213469 1146.61858 0.2474 9.4807E-05 0.060726 2.3271E-05 0.30813 0.00011808 383.21350224882565 62.111 0.33249 62.078 61.906 62.239 -0.032787 62 16 5 0 0 0 0.13231 1 33882 33882 22.775 9.9024 1 81760000 22325 5576 15145 15434 26354 26354 0.051134246055880794 IFHDISLRF 9 Unmodified _IFHDISLRF_ 0 0 0 ENSG00000144029|ENST00000272418|MRPS5;ENST00000461916.5_1_2:95753104-95767538:-|nuORF ENSG00000144029|ENST00000272418|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.214599609375 3 383.213469 1146.61858 1.519 0.0005821 0.43841 0.000168 1.9574 0.0007501 383.21375334826274 89.862 0.46591 83.687 83.434 83.9 -6.1757 68 25 4 0 0 0 0.062454 2 59370 59245;59370 32.898 15.455 1 90204000 22326 5576 15145 15434 26355;26356 26356 0.051134246055880794 IFHEVPLKF 9 Unmodified _IFHEVPLKF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2184143066406 3 377.218332 1128.63317 0.73579 0.00027755 0.24363 9.1903E-05 0.97942 0.00036945 377.2183764471545 57.349 0.47566 57.283 57.098 57.573 -0.066036 81 23 5 0 0 0 0.039985 2 31165 31165;31264 38.615 26.44 1 86353000 22327 4099;14137 15146 15435 26357;26358 26357 0.07399496753691892 IFHEVPLKF 9 Unmodified _IFHEVPLKF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3244018554688 2 565.32386 1128.63317 1.0536 0.00059563 0.21376 0.00012085 1.2674 0.00071648 565.3238479245954 57.377 0.27704 57.311 57.161 57.438 -0.066036 32 13 3 0 0 0 0.020973 1 31194 31194 62.573 35.689 1 5205500 22328 4099;14137 15146 15435 26359 26359 0.07399496753691892 IFHEVPLKF 9 Unmodified _IFHEVPLKF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2185974121094 3 377.218332 1128.63317 1.4995 0.00056563 -0.08807 -3.3222E-05 1.4114 0.00053241 377.21826713180985 83.599 0.96738 77.423 76.924 77.891 -6.1757 130 50 3 0 0 0 0.044011 4 54885 54754;54885;55011;55139 40.239 26.44 1 113430000 22329 4099;14137 15146 15435 26360;26361;26362;26363 26361 0.07399496753691892 IFHEVPLKF 9 Unmodified _IFHEVPLKF_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3247680664062 2 565.32386 1128.63317 1.1686 0.00066066 -0.40239 -0.00022748 0.76625 0.00043318 565.3231929225269 83.549 0.73438 77.373 77.024 77.758 -6.1757 88 38 3 0 0 0 0.012668 1 54951 54951 72.968 49.82 1 25517000 22330 4099;14137 15146 15435 26364 26364 0.07399496753691892 IFHGGNKL 8 Unmodified _IFHGGNKL_ 0 0 0 REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF REV__ENST00000562813.1_1_16:56531612-56532525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2508850097656 2 443.250695 884.486836 0.75487 0.0003346 -0.67079 -0.00029733 0.084082 3.7269E-05 443.25024413848917 52.099 0.31442 52.04 51.875 52.189 -0.058918 25 14 3 0 0 0 0.67481 1 28212 28212 19.439 19.439 1 3014300 + 22331 28861 15147 15436 26365 26365 0.0399723930846676 IFHGRFAPI 9 Unmodified _IFHGRFAPI_ 0 0 0 REV__ENST00000481084.5_1_11:118972203-118972365:-|nuORF REV__ENST00000481084.5_1_11:118972203-118972365:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2028198242188 3 353.202905 1056.58688 1.161 0.00041007 -1.3566 -0.00047916 -0.19563 -6.9096E-05 353.20256461651894 17.545 0.21966 14.958 14.871 15.091 -2.5866 93 44 3 0 0 0 0.41742 1 9258 9258 11.495 0.67078 1 8038700 + 22332 22638 15148 15437 26366 26366 0.06085476642260801 IFHNFKGLL 9 Unmodified _IFHNFKGLL_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8167724609375 2 544.816202 1087.61785 1.2331 0.00067181 -1.2709 -0.00069242 -0.03782 -2.0605E-05 544.8156244986513 49.956 0.84201 49.907 49.531 50.373 -0.048824 122 41 4 0 0 0 0.28023 1 26970 26970 13.508 0 1 8123300 22333 7267 15149 15438 26367 26367 0.07754629956525605 IFHPTQPWVF 10 Unmodified _IFHPTQPWVF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.332275390625 2 636.332216 1270.64988 0.080975 5.1527E-05 0.37054 0.00023578 0.45151 0.00028731 636.3319732666117 77.237 0.28983 77.287 77.128 77.418 0.05011 25 11 3 0 0 0 0.49559 1 42660 42660 19.257 12.534 1 2296200 22334 10837 15150 15439 26368 26368 0.02537997639637979 IFHPTQPWVF 10 Unmodified _IFHPTQPWVF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3348999023438 2 636.332216 1270.64988 1.15 0.00073177 1.4461 0.00092019 2.5961 0.001652 636.3333117037937 95.872 0.28142 89.696 89.552 89.833 -6.1757 37 16 3 0 0 0 0.1028 2 63581 63449;63581 38.176 16.429 1 28271000 22335 10837 15150 15439 26369;26370 26370 0.02537997639637979 IFIDEIDSF 9 Unmodified _IFIDEIDSF_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7713012695312 2 549.771322 1097.52809 0.35609 0.00019577 0.061899 3.403E-05 0.41799 0.0002298 549.7712599029052 86.983 0.47871 86.983 86.765 87.244 0 98 31 4 0 0 0 0.045537 2 48204 48105;48204 46.921 18.434 1 6425500 22336 5025 15151 15440 26371;26372 26372 -0.016770892333852316 IFIDEIDSF 9 Unmodified _IFIDEIDSF_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.770751953125 2 549.771322 1097.52809 0.47546 0.0002614 -1.2665 -0.00069629 -0.79105 -0.0004349 549.770605985407 87.537 0.55736 87.033 86.681 87.239 -0.50423 67 24 4 0 0 0 0.12841 2 47882 47882;47981 30.225 13.283 1 5818000 22337 5025 15151 15440 26373;26374 26373 -0.016770892333852316 IFIDEIDSF 9 Unmodified _IFIDEIDSF_ 0 0 0 nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 nc|ENSG00000138138|Q8NBU5-2|ATAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7714233398438 2 549.771322 1097.52809 1.3359 0.00073444 0.53338 0.00029324 1.8693 0.0010277 549.7718494126185 98.09 0.65274 91.914 91.64 92.293 -6.1757 59 42 2 0 0 0 0.078417 1 65193 65193 38.151 2.107 1 29679000 22338 5025 15151 15440 26375 26375 -0.016770892333852316 IFIDPGYQTF 10 Unmodified _IFIDPGYQTF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.8013305664062 2 600.800414 1199.58628 -0.046126 -2.7713E-05 2.4491 0.0014714 2.403 0.0014437 600.8015956646622 78.333 0.29897 78.333 78.15 78.449 0 21 13 2 0 0 0 0.6606 1 43509 43509 7.2892 0 1 490180 22339 3595 15152 15441 26376 26376 -0.005534075881087119 IFIDPGYQTF 10 Unmodified _IFIDPGYQTF_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.80078125 2 600.800414 1199.58628 0.53522 0.00032156 0.39317 0.00023621 0.92839 0.00055778 600.8005482184678 86.69 0.57733 80.514 80.266 80.843 -6.1757 57 30 2 0 0 0 0.046375 3 57155 57039;57155;57283 60.074 42.961 1 97141000 22340 3595 15152 15441 26377;26378;26379 26378 -0.005534075881087119 IFIKDSNSL 9 Unmodified _IFIKDSNSL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MSMS AL20221201_MKP_PDAC_01 4 518.7876586914062 2 518.787307 1035.56006 NaN NaN NaN NaN NaN NaN NaN 49.446 1 44.05 43.55 44.55 -5.3961 0 0 0 0.018164 1 30896 30896 118.89 37.282 1 22341 1734 15153 15442 26380 26380 0.04370323240414109 IFIKDSNSL 9 Unmodified _IFIKDSNSL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MSMS AL20221201_MKP_PDAC_01 4 518.7865600585938 2 518.787307 1035.56006 NaN NaN NaN NaN NaN NaN NaN 49.632 1 44.093 43.593 44.593 -5.5391 0 0 0 0.014715 1 31027 31027 85.642 22.079 1 22342 1734 15153 15442 26381 26381 0.04370323240414109 IFIKWLREETF 11 Unmodified _IFIKWLREETF_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.4110717773438 2 741.411195 1480.80784 -0.13438 -9.963E-05 0.10789 7.9993E-05 -0.026486 -1.9637E-05 741.41121958893 86.378 0.48098 86.436 86.211 86.692 0.05822 66 28 3 0 0 0 0.30985 2 48000 47871;48000 26.268 0 1 111130000 + 22343 21769 15154 15443 26382;26383 26383 0.08666452108195699 IFIKWLREETF 11 Unmodified _IFIKWLREETF_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.4100341796875 2 741.411195 1480.80784 NaN NaN NaN NaN NaN NaN NaN 86.085 1 86.146 85.646 86.646 0.061638 0 0 0 0.45469 1 47723 47723 26.268 0 1 + 22344 21769 15154 15443 26384 26384 0.08666452108195699 IFIKWLREETF 11 Unmodified _IFIKWLREETF_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.9130249023438 2 741.411195 1480.80784 -0.13438 -9.963E-05 0.10789 7.9993E-05 -0.026486 -1.9637E-05 741.41121958893 86.378 0.48098 86.436 86.211 86.692 0.05822 66 28 3 0 0 0 0.28226 1 47871 47871 17.113 0 1 111130000 + 22345 21769 15154 15443 26385 26385 0.08666452108195699 IFILNYKDCFL 11 Unmodified _IFILNYKDCFL_ 0 0 0 REV__ENSG00000172469|ENST00000358812|MANEA REV__ENSG00000172469|ENST00000358812|MANEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.5826416015625 3 463.580941 1387.72099 0.61806 0.00028652 2.4044 0.0011146 3.0224 0.0014011 463.5820863954714 44.522 0.074265 39.67 39.614 39.688 -4.852 6 4 2 0 0 0 0.6889 1 27190 27190 2.4348 0 1 12580000 + 22346 22652 15155 15444 26386 26386 0.04264329562147395 IFIPSSIAF 9 Unmodified _IFIPSSIAF_ 0 0 0 ENST00000508163.1_1_4:88239551-88261757:-|nuORF;ENST00000502576.5_1_4:88258430-88295551:-|nuORF;ENSG00000198189|ENST00000358290|HSD17B11 ENST00000508163.1_1_4:88239551-88261757:-|nuORF ENST00000508163.1_1_4:88239551-88261757:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7848205566406 2 497.784036 993.553519 NaN NaN NaN NaN NaN NaN NaN 94.59 1 94.604 94.104 95.104 0.014244 0 0 0 0.27711 1 52564 52564 26.341 1.6674 1 22347 10060 15156 15445 26387 26387 0.056484300797023934 IFIQNSKLYF 10 Unmodified _IFIQNSKLYF_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.853515625 2 636.852981 1271.69141 0.62693 0.00039926 0.22936 0.00014607 0.85629 0.00054533 636.8530549468483 70.329 0.46282 70.365 70.173 70.636 0.035507 75 21 5 0 0 0 7.1624E-07 2 38657 38657;38761 132.38 82.825 1 53298000 22348 5059 15157 15446 26388;26389 26388 0.06643133608326934 IFIQNSKLYF 10 Unmodified _IFIQNSKLYF_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8544311523438 2 636.852981 1271.69141 -0.063592 -4.0498E-05 0.10055 6.4035E-05 0.036958 2.3537E-05 636.8530108337674 85.082 0.99702 78.906 78.262 79.259 -6.1757 153 60 3 0 0 0 9.8271E-06 5 55653 55653;55779;55901;56024;56156 128.57 79.253 1 72564000 22349 5059 15157 15446 26390;26391;26392;26393;26394 26390 0.06643133608326934 IFIQNSKLYF 10 Unmodified _IFIQNSKLYF_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MSMS AL20221201_MKP_PDAC_01 4 636.8535766601562 2 636.852981 1271.69141 NaN NaN NaN NaN NaN NaN NaN 84.356 1 78.18 77.68 78.68 -6.1757 0 0 0 0.018269 1 55491 55491 65.474 42.737 1 22350 5059 15157 15446 26395 26395 0.06643133608326934 IFIQTCTCYL 10 Unmodified _IFIQTCTCYL_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|6|1|sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|6|1|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1958618164062 3 402.196211 1203.5668 NaN NaN NaN NaN NaN NaN NaN 86.138 1 86.2 85.7 86.7 0.061638 0 0 0 0.7417 1 47769 47769 8.9762 0 1 + 22351 29413 15158 15447 26396 26396 -0.026838231948659086 IFIQTCTCYL 10 Unmodified _IFIQTCTCYL_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|6|1|sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|6|1|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1952514648438 3 402.196211 1203.5668 NaN NaN NaN NaN NaN NaN NaN 86.369 1 86.427 85.927 86.927 0.05822 0 0 0 0.81521 1 47944 47944 6.6304 0.43853 1 + 22352 29413 15158 15447 26397 26397 -0.026838231948659086 IFIRNPRTLF 10 Unmodified _IFIRNPRTLF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2558288574219 3 426.255669 1275.74518 1.4233 0.00060667 -0.025354 -1.0807E-05 1.3979 0.00059586 426.25573756291 86.636 0.55444 80.46 80.196 80.751 -6.1757 72 29 3 0 0 0 0.010306 3 57235 56989;57109;57235 87.123 45.776 1 46675000 22353 4081 15159 15448 26398;26399;26400 26400 0.11833350830693234 IFIRNVLLF 9 Unmodified _IFIRNVLLF_ 0 0 0 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8552856445312 2 567.855327 1133.6961 1.0614 0.0006027 -0.28015 -0.00015908 0.78122 0.00044362 567.8551137141119 91.135 0.6306 91.172 90.983 91.614 0.036499 54 23 3 0 0 0 0.01958 3 50757 50659;50757;50869 81.613 21.224 1 26066000 22354 5368 15160 15449 26401;26402;26403 26402 0.1346006254175336 IFIRNVLLF 9 Unmodified _IFIRNVLLF_ 0 0 0 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8562622070312 2 567.855327 1133.6961 1.3538 0.00076875 0.087848 4.9885E-05 1.4416 0.00081863 567.8553447186097 100.12 0.30403 93.946 93.74 94.044 -6.1757 61 19 4 0 0 0 0.029718 2 66740 66740;66901 71.134 20.279 1 199320000 22355 5368 15160 15449 26404;26405 26404 0.1346006254175336 IFIRTPRTLF 10 Unmodified _IFIRTPRTLF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2589111328125 3 421.923919 1262.74993 1.4939 0.0006303 -0.25772 -0.00010874 1.2361 0.00052156 421.92374420193755 90.598 0.64349 84.422 84.041 84.684 -6.1757 84 38 3 0 0 0 0.046375 3 59702 59702;59830;59960 67.081 35.445 1 25976000 22356 8612 15161 15450 26406;26407;26408 26406 0.12906234973456776 IFIRTPRTLF 10 Unmodified _IFIRTPRTLF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MSMS AL20221201_MKP_PDAC_01 4 632.3820190429688 2 632.38224 1262.74993 NaN NaN NaN NaN NaN NaN NaN 90.611 1 84.436 83.936 84.936 -6.1757 0 0 0 0.168 1 59858 59858 45.7 17.213 1 22357 8612 15161 15450 26409 26409 0.12906234973456776 IFITEKHGNYF 11 Unmodified _IFITEKHGNYF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2373962402344 3 456.903072 1367.68739 0.63765 0.00029134 0.20094 9.1812E-05 0.83859 0.00038316 456.9032799322652 48.251 0.2233 48.212 48.102 48.326 -0.038647 24 10 3 0 0 0 0.31498 1 26017 26017 25.997 15.098 1 2688700 22358 4276 15162 15451 26410 26410 0.01825044114616503 IFIWRLPTAPE 11 Unmodified _IFIWRLPTAPE_ 0 0 0 REV__ENST00000592782.5_1_17:43184347-43184791:+|nuORF REV__ENST00000592782.5_1_17:43184347-43184791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2569580078125 3 448.255446 1341.74451 0.72071 0.00032306 -0.68023 -0.00030492 0.040476 1.8144E-05 448.2554134307162 39.774 0.22593 39.779 39.647 39.873 0.0050545 20 10 3 0 0 0 0.72981 1 21219 21219 1.4551 0 1 1421100 + 22359 29181 15163 15452 26411 26411 0.08730511391013351 IFKDFYEL 8 Unmodified _IFKDFYEL_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM nc|ENSG00000068976|P11217-2|PYGM nc|ENSG00000068976|P11217-2|PYGM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7791137695312 2 537.778951 1073.54335 NaN NaN NaN NaN NaN NaN NaN 92.59 1 92.59 92.09 93.09 0 0 0 0 0.97444 1 51198 51198 2.8892 0 1 22360 993 15164 15453 26412 26412 0.009518223544546345 IFKDKPIKL 9 Unmodified _IFKDKPIKL_ 0 0 0 nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.906005859375 3 367.905865 1100.69577 -0.097286 -3.5792E-05 0.6074 0.00022347 0.51012 0.00018767 368.24042986399235 32.929 0.25158 32.959 32.842 33.094 0.029743 26 10 3 0 0 0 0.078314 1 17304 17304 42.312 16.292 1 3200100 22361 5812 15165 15454 26413 26413 0.14944642821865273 IFKDKPIKL 9 Unmodified _IFKDKPIKL_ 0 0 0 nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.2153930664062 3 367.905865 1100.69577 1.8387 0.00067648 -0.94373 -0.0003472 0.89501 0.00032928 367.9055536323015 37.296 0.26488 33.013 32.873 33.137 -4.2835 24 15 2 0 0 0 0.21753 1 21883 21883 3.5871 1.0886 1 5806800 22362 5812 15165 15454 26414 26414 0.14944642821865273 IFKDRFFWRLH 11 Unmodified _IFKDRFFWRLH_ 0 0 0 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 782.93212890625 2 782.93042 1563.84629 0.029252 2.2902E-05 -0.70331 -0.00055064 -0.67406 -0.00052774 782.9295095623152 87.171 0.22747 87.229 87.078 87.306 0.05822 16 11 2 0 0 0 0.50515 1 48433 48433 16.149 6.766 1 21055000 22363 66 15166 15455 26415 26415 0.08691802533394366 IFKDRFFWRLH 11 Unmodified _IFKDRFFWRLH_ 0 0 0 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1;ENSG00000137745|ENST00000260302|MMP13 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1 chr11:102949158-102950110|123|15.24|0.34|5.49|-|1|MMP13,MMP13|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 782.9306640625 2 782.93042 1563.84629 NaN NaN NaN NaN NaN NaN NaN 84.18 1 84.243 83.743 84.743 0.063171 0 0 0 0.93669 1 46575 46575 4.897 1.9018 1 22364 66 15166 15455 26416 26416 0.08691802533394366 IFKFIKIWA 9 Unmodified _IFKFIKIWA_ 0 0 0 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2423095703125 3 389.242589 1164.70594 0.32674 0.00012718 -1.6726 -0.00065105 -1.3459 -0.00052386 389.24179169567117 60.778 0.18933 60.778 60.695 60.885 0 10 7 2 0 0 0 0.61256 1 33919 33919 0.26902 0.033176 1 695110 + 22365 17636 15167 15456 26417 26417 0.1301725054711369 IFKFIKIWA 9 Unmodified _IFKFIKIWA_ 0 0 0 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.242589 1164.70594 0.32674 0.00012718 -1.6726 -0.00065105 -1.3459 -0.00052386 389.24179169567117 60.778 0.18933 60.778 60.695 60.885 0 0.17627 0.00010587 NaN 0.26902 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 695110 + 22366 17636 15167 15456 0.1301725054711369 IFKFLKIWVFF 11 Unmodified _IFKFLKIWVFF_ 0 0 0 REV__nc|ENSG00000118762|Q13563-5|PKD2 REV__nc|ENSG00000118762|Q13563-5|PKD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.6325073242188 3 496.631965 1486.87407 NaN NaN NaN NaN NaN NaN NaN 23.678 1 23.7 23.2 24.2 0.021185 0 0 0 0.94301 1 12201 12201 0.094841 0 1 + 22367 19168 15168 15457 26418 26418 0.15010312740878362 IFKGHYLA 8 Unmodified _IFKGHYLA_ 0 0 0 REV__nc|ENSG00000198373|O00308-3|WWP2 REV__nc|ENSG00000198373|O00308-3|WWP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7687072753906 2 474.76872 947.522887 NaN NaN NaN NaN NaN NaN NaN 2.2499 1 2.2499 1.7499 2.7499 0 0 0 0 0.97444 1 1091 1091 0 0 1 + 22368 24014 15169 15458 26419 26419 0.047026964852989295 IFKGHYLA 8 Unmodified _IFKGHYLA_ 0 0 0 REV__nc|ENSG00000198373|O00308-3|WWP2 REV__nc|ENSG00000198373|O00308-3|WWP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7687072753906 2 474.76872 947.522887 NaN NaN NaN NaN NaN NaN NaN 7.8227 1 7.838 7.338 8.338 0.015238 0 0 0 0.97444 1 3899 3899 0 0 1 + 22369 24014 15169 15458 26420 26420 0.047026964852989295 IFKGYLATR 9 Unmodified _IFKGYLATR_ 0 0 0 REV__ENSG00000145391|ENST00000274031|SETD7 REV__ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2115173339844 3 356.878198 1067.61277 1.2675 0.00045233 -0.53516 -0.00019099 0.73231 0.00026135 356.8781655525868 39.656 0.42208 35.205 34.98 35.402 -4.4509 86 26 4 0 0 0 0.20507 1 23642 23642 22.658 2.0772 1 89165000 + 22370 20774 15170 15459 26421 26421 0.08166326093896714 IFKGYLATR 9 Unmodified _IFKGYLATR_ 0 0 0 REV__ENSG00000145391|ENST00000274031|SETD7 REV__ENSG00000145391|ENST00000274031|SETD7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.86279296875 3 356.878198 1067.61277 1.2675 0.00045233 -0.53516 -0.00019099 0.73231 0.00026135 356.8781655525868 39.656 0.42208 35.205 34.98 35.402 -4.4509 86 26 4 0 0 0 0.18811 1 23677 23677 17.113 0 1 89165000 + 22371 20774 15170 15459 26422 26422 0.08166326093896714 IFKHEPDHKFY 11 Unmodified _IFKHEPDHKFY_ 0 0 0 REV__nc|ENSG00000163249|Q8N7R7-3|CCNYL1 REV__nc|ENSG00000163249|Q8N7R7-3|CCNYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.9159240722656 3 487.582221 1459.72483 0.54237 0.00026445 -0.059897 -2.9205E-05 0.48248 0.00023525 487.91646415339017 54.729 0.16253 54.662 54.622 54.785 -0.066936 12 7 2 0 0 0 0.72952 1 29744 29744 0.50596 0 1 984550 + 22372 21738 15171 15460 26423 26423 0.013361353802110898 IFKISEKFH 9 Unmodified _IFKISEKFH_ 0 0 0 REV__ENST00000604988.1_1_6:338073-350865:+|nuORF REV__ENST00000604988.1_1_6:338073-350865:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8255615234375 2 574.826766 1147.63898 0.79367 0.00045622 -1.9579 -0.0011255 -1.1642 -0.00066924 574.8254917031912 64.17 0.22955 63.685 63.592 63.821 -0.48512 16 10 2 0 0 0 0.52067 1 35008 35008 6.2058 1.4498 1 836190 + 22373 18829 15172 15461 26424 26424 0.07106595265395299 IFKKHFISL 9 Unmodified _IFKKHFISL_ 0 0 0 ENST00000371835.8_1_19:15357923-15358298:-|nuORF ENST00000371835.8_1_19:15357923-15358298:-|nuORF ENST00000371835.8_1_19:15357923-15358298:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.234375 3 378.234093 1131.68045 0.043605 1.6493E-05 -1.766 -0.00066796 -1.7224 -0.00065147 378.2335615451605 29.229 0.11909 29.259 29.18 29.299 0.030106 7 4 2 0 0 0 0.42049 1 15250 15250 11.495 0 1 1646300 22374 12367 15173 15462 26425 26425 0.11987776024716368 IFKKREIKR 9 Unmodified _IFKKREIKR_ 0 0 0 REV__nc|ENSG00000241356|P0C626|OR5G3 REV__nc|ENSG00000241356|P0C626|OR5G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3943481445312 2 609.395682 1216.77681 1.4252 0.00086849 -2.297 -0.0013998 -0.87185 -0.0005313 609.3936884790057 103.6 0.14844 97.42 97.366 97.515 -6.1757 44 24 3 0 0 0 0.59218 1 69452 69452 1.8442 0 1 8338800 + 22375 29968 15174 15463 26426 26426 0.17709343584624548 IFKLPYFPNIT 11 Unmodified _IFKLPYFPNIT_ 0 0 0 ENST00000262039.8_1_18:39661097-39661277:+|nuORF ENST00000262039.8_1_18:39661097-39661277:+|nuORF ENST00000262039.8_1_18:39661097-39661277:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.5921936035156 3 451.591946 1351.75401 0.94498 0.00042675 -0.13257 -5.9866E-05 0.81242 0.00036688 451.5915179202103 80.727 0.26333 80.785 80.652 80.915 0.057587 23 9 3 0 0 0 0.5942 1 44626 44626 11.631 2.3876 1 5327200 22376 11257 15175 15464 26427 26427 0.0922027967651502 IFKPLTHSL 9 Unmodified _IFKPLTHSL_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5465698242188 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 41.281 1 41.279 40.779 41.779 -0.0017929 0 0 0 0.19623 1 22054 22054 31.268 15.119 1 22377 3374 15176 15465 26428 26428 0.09239210236660256 IFKPLTHSL 9 Unmodified _IFKPLTHSL_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MSMS AL20221201_MKP_PDAC_01 4 352.546630859375 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 45.942 1 40.987 40.487 41.487 -4.9549 0 0 0 0.19623 1 28295 28295 31.268 9.7314 1 22378 3374 15176 15465 26429 26429 0.09239210236660256 IFKPPDPDNTF 11 Unmodified _IFKPPDPDNTF_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8219604492188 2 645.821878 1289.6292 0.31978 0.00020652 0.19553 0.00012628 0.51531 0.0003328 645.8218321313984 53.626 0.55925 53.174 52.803 53.362 -0.45173 83 27 4 0 0 0 2.1826E-06 3 29010 28909;29010;29115 101.54 65.037 1 14213000 22379 7411 15177 15466 26430;26431;26432 26431 -0.004026375306921182 IFKPPDPDNTF 11 Unmodified _IFKPPDPDNTF_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8240356445312 2 645.821878 1289.6292 0.24144 0.00015593 1.3224 0.00085401 1.5638 0.0010099 645.8226092128612 53.294 0.32477 53.231 52.981 53.306 -0.063423 26 15 2 0 0 0 0.029988 1 28871 28871 55.235 28.967 1 1722300 22380 7411 15177 15466 26433 26433 -0.004026375306921182 IFKPPDPDNTF 11 Unmodified _IFKPPDPDNTF_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8216552734375 2 645.821878 1289.6292 0.83149 0.000537 0.76437 0.00049365 1.5959 0.0010306 645.8225191068831 60.045 0.80722 53.93 53.572 54.379 -6.1147 97 44 3 0 0 0 5.4079E-44 4 38552 38410;38552;38685;38813 190.03 117.06 1 67834000 22381 7411 15177 15466 26434;26435;26436;26437 26435 -0.004026375306921182 IFKPPDPDNTF 11 Unmodified _IFKPPDPDNTF_ 0 0 0 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 ENSG00000165943|ENST00000298894|MOAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 645.821878 1289.6292 0.18148 0.00011721 -0.23845 -0.000154 -0.05697 -3.6792E-05 645.821658297721 52.941 0.28398 52.941 52.836 53.12 0 -0.1742 -0.00075759 NaN 101.54 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1019000 22382 7411 15177 15466 -0.004026375306921182 IFKTLSSKF 9 Unmodified _IFKTLSSKF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5469360351562 3 357.546337 1069.61718 0.24368 8.7128E-05 3.3405 0.0011944 3.5842 0.0012815 357.5470897995596 40.855 0.2204 40.853 40.711 40.931 -0.0017929 21 10 3 0 0 0 0.35911 1 21810 21810 14.218 8.4347 1 4743700 22383 7770 15178 15467 26438 26438 0.08515790516798916 IFKTLSSKF 9 Unmodified _IFKTLSSKF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 357.546337 1069.61718 1.4346 0.00051294 0.32683 0.00011686 1.7615 0.0006298 357.54637785209485 45.655 0.39655 40.7 40.555 40.951 -4.9549 -0.076309 -0.000293 NaN 14.218 50 26 2 NaN NaN NaN NaN 0 NaN NaN 0 22235000 22384 7770 15178 15467 0.08515790516798916 IFKWSQPLF 9 Unmodified _IFKWSQPLF_ 0 0 0 REV__ENST00000472633.1_1_12:7022280-7023170:+|nuORF REV__ENST00000472633.1_1_12:7022280-7023170:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2185668945312 3 389.218332 1164.63317 NaN NaN NaN NaN NaN NaN NaN 54.533 1 48.668 48.168 49.168 -5.8653 0 0 0 0.6306 1 34605 34605 7.609 0 1 + 22385 27523 15179 15468 26439 26439 0.057434967536892145 IFKYFLFFRLE 11 Unmodified _IFKYFLFFRLE_ 0 0 0 ENST00000477995.1_1_6:170176000-170181606:+|nuORF ENST00000477995.1_1_6:170176000-170181606:+|nuORF ENST00000477995.1_1_6:170176000-170181606:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2867431640625 3 508.286746 1521.83841 0.46609 0.00023691 0.38035 0.00019333 0.84644 0.00043023 508.6212004471575 78.042 0.35965 78.095 77.89 78.249 0.052452 49 14 5 0 0 0 0.71036 2 43041 43041;43145 1.3296 0.92138 1 13307000 22386 14007 15180 15469 26440;26441 26440 0.09836230493283438 IFKYYDPL 8 Unmodified _IFKYYDPL_ 0 0 0 REV__ENST00000479763.5_1_2:62729532-62738946:-|nuORF REV__ENST00000479763.5_1_2:62729532-62738946:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.8242797851562 2 529.781493 1057.54843 1.0719 0.00056788 -2.2525 -0.0011933 -1.1806 -0.00062544 529.7806469764504 101.25 0.08844 95.073 95.018 95.107 -6.1757 7 5 2 0 0 0 8.7369 1 67869 67869 15.768 7.1749 1 16278000 + 22387 23608 15181 15470 26442 26442 0.021961262170862028 IFLDPHTTQTF 11 Unmodified _IFLDPHTTQTF_ 0 0 0 ENST00000489247.1_1_X:107393350-107396939:+|nuORF;nc|ENSG00000101844|Q8WYN0-3|ATG4A;nc|ENSG00000101844|Q8WYN0-2|ATG4A;nc|ENSG00000101844|Q8WYN0-5|ATG4A;ENSG00000101844|ENST00000372232|ATG4A ENST00000489247.1_1_X:107393350-107396939:+|nuORF ENST00000489247.1_1_X:107393350-107396939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8390502929688 2 660.335153 1318.65575 0.080311 5.3032E-05 1.4874 0.00098218 1.5677 0.0010352 660.335950150202 61.582 0.21478 61.094 60.988 61.202 -0.48764 21 9 3 0 0 0 0.33405 1 33532 33532 24.991 17.081 1 1962900 22388 1993 15182 15471 26443 26443 0.00917051360647747 IFLEESLSF 9 Unmodified _IFLEESLSF_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.3082885742188 2 542.78169 1083.54883 0.91226 0.00049516 0.083305 4.5217E-05 0.99556 0.00054037 542.7820866721543 99.438 0.16618 93.262 93.188 93.354 -6.1757 16 10 2 0 0 0 0.17666 1 66187 66187 13.508 9.1786 1 26121000 22389 1546 15183 15472 26444 26444 0.010395011462833281 IFLIFAMPMR 10 Unmodified _IFLIFAMPMR_ 0 0 0 ENSG00000130368|ENST00000674077|MAS1 ENSG00000130368|ENST00000674077|MAS1 ENSG00000130368|ENST00000674077|MAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5634765625 3 413.564457 1237.67154 -0.54846 -0.00022683 -0.32047 -0.00013254 -0.86894 -0.00035936 413.5647123044985 18.101 0.13393 18.115 18.043 18.177 0.013865 33 23 2 0 0 0 0.72247 1 9013 9013 0.13989 0 1 623990 22390 4208 15184 15473 26445 26445 0.062213430723431884 IFLLCSSDLAL 11 Unmodified _IFLLCSSDLAL_ 0 0 0 REV__ENSG00000068697|ENST00000175091|LAPTM4A REV__ENSG00000068697|ENST00000175091|LAPTM4A MSMS AL20221201_MKP_PDAC_01 4 597.8272705078125 2 597.825575 1193.6366 NaN NaN NaN NaN NaN NaN NaN 94.026 1 87.85 87.35 88.35 -6.1757 0 0 0 0.58065 1 62268 62268 21.537 2.28 1 + 22391 17440 15185 15474 26446 26446 0.04752378745411079 IFLLTGVPGL 10 Unmodified _IFLLTGVPGL_ 0 0 0 ENSG00000197674|ENST00000641159|OR51C1P ENSG00000197674|ENST00000641159|OR51C1P ENSG00000197674|ENST00000641159|OR51C1P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3196411132812 2 515.320786 1028.62702 0.67335 0.00034699 -1.9306 -0.0009949 -1.2573 -0.00064791 515.3193492744775 71.873 0.20528 71.912 71.809 72.014 0.039024 16 9 3 0 0 0 0.051739 1 39571 39571 57.471 2.6978 1 2835400 22392 9989 15186 15475 26447 26447 0.11384978522187339 IFLLTGVPGL 10 Unmodified _IFLLTGVPGL_ 0 0 0 ENSG00000197674|ENST00000641159|OR51C1P ENSG00000197674|ENST00000641159|OR51C1P ENSG00000197674|ENST00000641159|OR51C1P MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3214111328125 2 515.320786 1028.62702 1.0051 0.00051794 1.0975 0.00056557 2.1026 0.0010835 515.3207719867586 87.16 0.28731 80.984 80.825 81.112 -6.1757 17 15 2 0 0 0 0.42068 1 57494 57494 20.454 4.3045 1 6666400 22393 9989 15186 15475 26448 26448 0.11384978522187339 IFLNKTFQW 9 Unmodified _IFLNKTFQW_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8265991210938 2 598.826766 1195.63898 0.17554 0.00010512 0.050038 2.9964E-05 0.22557 0.00013508 598.826649441685 73.852 0.29321 73.896 73.781 74.074 0.043983 35 13 3 0 0 0 0.0082548 1 40689 40689 96.367 52.508 1 17083000 22394 5126 15187 15476 26449 26449 0.04898595265376571 IFLNKTFQW 9 Unmodified _IFLNKTFQW_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8263549804688 2 598.826766 1195.63898 -0.41081 -0.00024601 0.06459 3.8678E-05 -0.34622 -0.00020733 598.8266728639087 93.391 0.48027 87.215 86.932 87.412 -6.1757 99 35 3 0 0 0 0.0082548 2 61880 61756;61880 96.367 52.508 1 92883000 22395 5126 15187 15476 26450;26451 26451 0.04898595265376571 IFLPILRTGF 10 Unmodified _IFLPILRTGF_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8624877929688 2 588.860609 1175.70667 2.3295 0.0013717 -1.7459 -0.0010281 0.58359 0.00034365 588.8595197419131 96.051 0.30855 96.055 95.865 96.174 0.004158 25 10 3 0 0 0 0.14688 1 53340 53340 40.239 13.971 1 4536400 22396 7502 15188 15477 26452 26452 0.12584045196172156 IFLPILRTGF 10 Unmodified _IFLPILRTGF_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99695745-99696843:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8604125976562 2 588.860609 1175.70667 1.0984 0.00064681 1.0434 0.00061441 2.1418 0.0012612 588.8606301898192 100.26 0.16019 94.086 93.996 94.157 -6.1757 31 9 4 0 0 0 0.01074 1 66974 66974 86.332 38.583 1 96298000 22397 7502 15188 15477 26453 26453 0.12584045196172156 IFLPQVLDVF 10 Unmodified _IFLPQVLDVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8461303710938 2 595.844625 1189.6747 0.46591 0.00027761 0.45166 0.00026912 0.91757 0.00054673 595.8453589204269 102.14 0.085617 95.965 95.918 96.003 -6.1757 6 3 2 0 0 0 0.60623 1 68573 68573 10.824 4.1008 1 6630600 22398 8296;16388 15189 15478 26454 26454 0.08744632722368806 IFLQHHQI 8 Unmodified _IFLQHHQI_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2886352539062 2 518.290351 1034.56615 NaN NaN NaN NaN NaN NaN NaN 86.564 1 86.622 86.122 87.122 0.05822 0 0 0 0.59893 1 48080 48080 34.187 1.8818 1 22399 4885 15190 15479 26455 26455 0.05024886262594919 IFLQSLWNG 9 Unmodified _IFLQSLWNG_ 0 0 0 REV__ENST00000273258.3_1_3:69154230-69154353:+|nuORF REV__ENST00000273258.3_1_3:69154230-69154353:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.8937377929688 3 359.862437 1076.56548 NaN NaN NaN NaN NaN NaN NaN 43.418 1 38.654 38.154 39.154 -4.7648 0 0 0 0.82739 1 26371 26371 2.4985 0 1 + 22400 25154 15191 15480 26456 26456 0.030260468229016624 IFLRRFADDIL 11 Unmodified _IFLRRFADDIL_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2687683105469 3 460.266233 1377.77687 0.20676 9.5165E-05 1.0535 0.00048488 1.2602 0.00058005 460.26709568325236 41.253 0.32765 41.251 41.053 41.381 -0.0017929 41 15 3 0 0 0 0.70147 1 21983 21983 4.1166 1.6818 1 9925200 22401 2714 15192 15481 26457 26457 0.10309298794004462 IFLSMFLIVL 10 Unmodified _IFLSMFLIVL_ 0 0 0 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 ENSG00000146802|ENST00000312814|TMEM168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2448120117188 3 399.24349 1194.70864 0.50673 0.00020231 -0.60885 -0.00024308 -0.10212 -4.077E-05 399.24338878173796 52.556 0.25543 52.123 52.003 52.259 -0.43367 29 12 3 0 0 0 0.62068 1 28389 28389 8.9762 0 1 5672300 22402 5795 15193 15482 26458 26458 0.11907337889761038 IFLSQPILL 9 Unmodified _IFLSQPILL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.331298828125 2 522.328611 1042.64267 4.2728 0.0022318 1.3047 0.0006815 5.5776 0.0029133 522.3292122807641 99.151 0.21364 99.122 99.003 99.216 -0.028282 25 7 5 0 0 0 0.012148 1 55072 55072 74.423 0 1 29751000 22403 10449;8229 15194 15483 26459 26459 0.12305265039231017 IFLSTDPDSDD 11 Unmodified _IFLSTDPDSDD_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8453979492188 3 408.847069 1223.51938 0.051293 2.0971E-05 -1.9431 -0.00079442 -1.8918 -0.00077345 408.8457171885828 76.537 0.030594 76.057 76.031 76.061 -0.47945 6 3 2 0 0 0 0.6889 1 41897 41897 2.4348 0 1 1445000 + 22404 23892 15195 15484 26460 26460 -0.08344107660514055 IFLTKANLI 9 Unmodified _IFLTKANLI_ 0 0 0 ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF ENSG00000119638|ENST00000238616|NEK9 ENSG00000119638|ENST00000238616|NEK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.826171875 2 516.826235 1031.63792 0.88664 0.00045824 0.7535 0.00038943 1.6401 0.00084767 516.8259360127521 65.593 0.28262 65.593 65.455 65.738 7.6294E-06 30 13 3 0 0 0 0.013041 1 35956 35956 71.922 10.565 1 9581400 22405 3448 15196 15485 26461 26461 0.12336380896454102 IFLTKANLI 9 Unmodified _IFLTKANLI_ 0 0 0 ENSG00000119638|ENST00000238616|NEK9;ENST00000556170.5_1_14:75573136-75593624:-|nuORF ENSG00000119638|ENST00000238616|NEK9 ENSG00000119638|ENST00000238616|NEK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.827392578125 2 516.826235 1031.63792 0.50186 0.00025937 0.049268 2.5463E-05 0.55113 0.00028484 516.8262222788444 82.497 0.9472 76.321 75.677 76.624 -6.1757 62 53 2 0 0 0 0.047196 1 54242 54242 46.021 4.1813 1 9020600 22406 3448 15196 15485 26462 26462 0.12336380896454102 IFLYILDRSWV 11 Unmodified _IFLYILDRSWV_ 0 0 0 REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF REV__ENST00000378891.9_3_1:1270760-1271384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 712.9007568359375 2 712.900463 1423.78637 -0.095211 -6.7876E-05 0.065123 4.6426E-05 -0.030088 -2.145E-05 712.9006993495558 86.77 0.44416 86.829 86.634 87.078 0.05822 47 21 3 0 0 0 0.12183 2 48166 48166;48288 39.95 0 1 66563000 + 22407 26273 15197 15486 26463;26464 26463 0.09143067079503453 IFMENRNEF 9 Oxidation (M) _IFM(Oxidation (M))ENRNEF_ IFM(1)ENRNEF IFM(66)ENRNEF 0 0 1 ENSG00000167114|ENST00000300456|SLC27A4 ENSG00000167114|ENST00000300456|SLC27A4 ENSG00000167114|ENST00000300456|SLC27A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2775268554688 2 608.27678 1214.53901 -0.046517 -2.8295E-05 1.142 0.00069467 1.0955 0.00066638 608.2775904525388 37.581 0.21351 37.581 37.51 37.724 0 16 10 2 0 0 0 0.017075 1 20042 20042 66.457 28.483 1 1899300 22408 7576 15198 15487 26465 26465 1293 -0.059680101307549194 IFMTLHQW 8 Unmodified _IFMTLHQW_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8110961914062 2 538.273312 1074.53207 1.3747 0.00073995 -0.47594 -0.00025619 0.89872 0.00048376 538.2731277223384 92.179 0.25799 92.209 92.078 92.336 0.030197 14 9 2 0 0 0 8.7369 1 51310 51310 9.3474 2.9933 1 2613300 + 22409 24118 15199 15488 26466 26466 -0.0022127822066977387 IFMYVRPASGL 11 Unmodified _IFMYVRPASGL_ 0 0 0 ENSG00000196578|ENST00000358642|OR5AC2 ENSG00000196578|ENST00000358642|OR5AC2 ENSG00000196578|ENST00000358642|OR5AC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3392333984375 2 627.339184 1252.66381 -0.026027 -1.6328E-05 -0.049471 -3.1035E-05 -0.075498 -4.7363E-05 627.339370316389 66.318 0.31336 65.835 65.711 66.025 -0.48323 39 16 3 0 0 0 0.58219 1 36204 36204 12.241 1.4167 1 4627700 22410 9844 15200 15489 26467 26467 0.04758907076438845 IFNEYLKI 8 Unmodified _IFNEYLKI_ 0 0 0 REV__ENSG00000185627|ENST00000532097|PSMD13 REV__ENSG00000185627|ENST00000532097|PSMD13 MSMS AL20221201_MKP_PDAC_01 4 520.29541015625 2 520.294768 1038.57498 NaN NaN NaN NaN NaN NaN NaN 84.664 1 78.489 77.989 78.989 -6.1757 0 0 0 0.35317 1 55713 55713 58.679 10.333 1 + 22411 23515 15201 15490 26468 26468 0.05723815108422059 IFNEYLKI 8 Unmodified _IFNEYLKI_ 0 0 0 REV__ENSG00000185627|ENST00000532097|PSMD13 REV__ENSG00000185627|ENST00000532097|PSMD13 MSMS AL20221201_MKP_PDAC_01 4 520.2943115234375 2 520.294768 1038.57498 NaN NaN NaN NaN NaN NaN NaN 84.856 1 78.68 78.18 79.18 -6.1757 0 0 0 0.7268 1 55846 55846 26.884 3.7352 1 + 22412 23515 15201 15490 26469 26469 0.05723815108422059 IFNIKFLAR 9 Unmodified _IFNIKFLAR_ 0 0 0 ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.7944946289062 3 374.565843 1120.6757 0.15117 5.6624E-05 1.0651 0.00039897 1.2163 0.00045559 374.56610803578536 73.154 0.33691 73.196 73.089 73.426 0.041733 22 15 2 0 0 0 0.21874 1 40425 40425 1.1933 0 1 1659100 22413 5049 15202 15491 26470 26470 0.12018891881939453 IFNKFSHFY 9 Unmodified _IFNKFSHFY_ 0 0 0 ENSG00000124134|ENST00000537075|KCNS1;ENSG00000156486|ENST00000287042|KCNS2 ENSG00000124134|ENST00000537075|KCNS1;ENSG00000156486|ENST00000287042|KCNS2 ENSG00000156486|ENST00000287042|KCNS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3060913085938 2 601.803291 1201.59203 0.59358 0.00035722 1.4315 0.0008615 2.0251 0.0012187 602.3057246231422 86.687 0.78886 80.511 80.017 80.806 -6.1757 117 42 4 0 0 0 0.28047 1 57020 57020 18.135 2.2878 1 40311000 22414 3747;6458 15203 15492 26471 26471 -0.0007026428577319166 IFNLLPEVF 9 Unmodified _IFNLLPEVF_ 0 0 0 REV__ENST00000464468.1_1_7:931948-933548:+|nuORF REV__ENST00000464468.1_1_7:931948-933548:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 546.3138427734375 2 546.310418 1090.60628 NaN NaN NaN NaN NaN NaN NaN 96.9 1 90.724 90.224 91.224 -6.1757 0 0 0 0.035065 1 64218 64218 64.236 3.8468 1 + 22415 24442 15204 15493 26472 26472 0.06460388142522788 IFNQHALDFI 10 Unmodified _IFNQHALDFI_ 0 0 0 ENST00000553941.5_1_14:59953430-59961809:+|nuORF ENST00000553941.5_1_14:59953430-59961809:+|nuORF ENST00000553941.5_1_14:59953430-59961809:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3165893554688 2 609.319306 1216.62406 -0.22267 -0.00013568 -2.4372 -0.001485 -2.6599 -0.0016207 609.3176812741606 33.579 0.21024 33.42 33.297 33.507 -0.15918 14 8 2 0 0 0 0.66229 1 17525 17525 0.45834 0 1 1366900 22416 15201 15205 15494 26473 26473 0.024411033973592566 IFNQNNHNF 9 Unmodified _IFNQNNHNF_ 0 0 0 ENST00000463021.1_1_6:99858595-99858832:-|nuORF;nc|ENSG00000132424|Q8TF01-2|PNISR;ENSG00000132424|ENST00000369239|PNISR ENST00000463021.1_1_6:99858595-99858832:-|nuORF ENST00000463021.1_1_6:99858595-99858832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2672729492188 2 574.267604 1146.52066 -0.096405 -5.5362E-05 -0.040079 -2.3016E-05 -0.13648 -7.8379E-05 574.2674530523801 33.355 0.31705 33.196 33.052 33.369 -0.15918 29 12 4 0 0 0 0.0082281 1 17380 17380 92.822 54.647 1 6185900 22417 4404 15206 15495 26474 26474 -0.046743839904365814 IFNSAFGSFL 10 Unmodified _IFNSAFGSFL_ 0 0 0 nc|ENSG00000120519|Q0GE19-4|SLC10A7;nc|ENSG00000120519|Q0GE19-5|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7 nc|ENSG00000120519|Q0GE19-4|SLC10A7 nc|ENSG00000120519|Q0GE19-4|SLC10A7 MSMS AL20221201_MKP_PDAC_01 4 551.7838745117188 2 551.782025 1101.5495 NaN NaN NaN NaN NaN NaN NaN 98.776 1 92.6 92.1 93.1 -6.1757 0 0 0 0.7417 1 65576 65576 14.838 0 1 22418 16158 15207 15496 26475 26475 0.0027834058601001743 IFNSQATIII 10 Unmodified _IFNSQATIII_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1;nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3251342773438 2 560.324057 1118.63356 0.17249 9.6653E-05 1.0776 0.00060383 1.2501 0.00070048 560.324750068977 69.452 0.73701 68.973 68.445 69.182 -0.47903 73 31 4 0 0 0 0.32072 1 37940 37940 26.268 0.86883 1 9217500 22419 8867 15208 15497 26476 26476 0.07898871682914432 IFNYLQNL 8 Unmodified _IFNYLQNL_ 0 0 0 REV__ENSG00000108510|ENST00000397786|MED13 REV__ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7794189453125 2 512.776742 1023.53893 0.74173 0.00038034 2.3783 0.0012195 3.12 0.0015999 512.7780508928766 50.443 0.20184 50.051 49.891 50.093 -0.3923 14 9 2 0 0 0 0.77907 1 27111 27111 10.183 0.83596 1 2966600 + 22420 18611 15209 15498 26477 26477 0.028103579315711613 IFPKPPLYTF 10 Unmodified _IFPKPPLYTF_ 0 0 0 ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8470458984375 2 611.847167 1221.67978 0.39587 0.00024221 -0.7307 -0.00044707 -0.33482 -0.00020486 611.8474367471694 76.473 0.68829 76.521 76.133 76.822 0.047943 64 28 3 0 0 0 0.078417 3 42230 42035;42120;42230 66.457 32.055 1 11774000 22421 8711 15210 15499 26478;26479;26480 26480 0.07780936584981646 IFPKPPLYTF 10 Unmodified _IFPKPPLYTF_ 0 0 0 ENSG00000177853|ENST00000316045|ZNF518A;nc|ENSG00000177853|Q6AHZ1-2|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8490600585938 2 611.847167 1221.67978 1.1804 0.00072222 0.50497 0.00030897 1.6854 0.0010312 611.8472816866254 94.379 0.67813 88.203 87.88 88.558 -6.1757 121 39 4 0 0 0 0.031932 4 62711 62338;62461;62587;62711 69.105 63.961 1 53107000 22422 8711 15210 15499 26481;26482;26483;26484 26484 0.07780936584981646 IFPLETPAF 9 Unmodified _IFPLETPAF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7824096679688 2 517.781493 1033.54843 0.34524 0.00017876 0.42991 0.0002226 0.77515 0.00040136 517.7819156847889 92.131 0.51294 91.65 91.391 91.903 -0.48092 60 26 3 0 0 0 0.25297 2 50382 50284;50382 19.439 6.9074 1 1126500 22423 7042 15211 15500 26485;26486 26486 0.033001262170728296 IFPLETPAF 9 Unmodified _IFPLETPAF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.782470703125 2 517.781493 1033.54843 NaN NaN NaN NaN NaN NaN NaN 91.629 1 91.666 91.166 92.166 0.036499 0 0 0 0.13852 1 50964 50964 38.151 16.405 1 22424 7042 15211 15500 26487 26487 0.033001262170728296 IFPLETPAF 9 Unmodified _IFPLETPAF_ 0 0 0 ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7831420898438 2 517.781493 1033.54843 0.28248 0.00014626 2.2411 0.0011604 2.5236 0.0013067 517.7827821460946 99.808 0.15709 93.632 93.558 93.715 -6.1757 29 11 3 0 0 0 0.040472 1 66587 66587 49.669 30.23 1 62213000 22425 7042 15211 15500 26488 26488 0.033001262170728296 IFPLFKFSF 9 Unmodified _IFPLFKFSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5513610839844 3 382.551311 1144.6321 0.53435 0.00020442 0.1416 5.4169E-05 0.67595 0.00025859 382.551339836124 58.651 0.36927 58.591 58.432 58.801 -0.060719 29 18 2 0 0 0 0.48152 1 31957 31957 5.2969 0 1 3863700 22426 10134 15212 15501 26489 26489 0.0655728238480151 IFPLLMSEVD 10 Unmodified _IFPLLMSEVD_ 0 0 0 REV__ENST00000570311.1_1_17:45126763-45127807:+|nuORF REV__ENST00000570311.1_1_17:45126763-45127807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3040161132812 2 582.304475 1162.5944 0.36407 0.000212 -1.2069 -0.00070278 -0.84282 -0.00049078 582.3037626770935 93.274 0.43212 92.817 92.615 93.047 -0.4574 59 18 5 0 0 0 0.5905 2 50918 50918;51019 11.64 3.7301 1 2093100 + 22427 28969 15213 15502 26490;26491 26490 0.01960403337011485 IFPQSLPKL 9 Unmodified _IFPQSLPKL_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8184814453125 2 521.81841 1041.62227 0.29171 0.00015222 -0.029442 -1.5363E-05 0.26226 0.00013685 521.8183525073011 67.436 0.97296 67.454 66.961 67.934 0.018036 94 48 2 0 0 0 0.025842 2 36907 36907;37019 57.722 17.772 1 8718200 22428 733 15214 15503 26492;26493 26492 0.1031209437940106 IFPYLDQFLRE 11 Unmodified _IFPYLDQFLRE_ 0 0 0 REV__ENSG00000165757|ENST00000375377|JCAD REV__ENSG00000165757|ENST00000375377|JCAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.879150390625 2 720.879727 1439.7449 0.45884 0.00033077 0.065638 4.7317E-05 0.52448 0.00037809 720.8795526661461 69.618 0.32987 69.648 69.534 69.864 0.030922 49 16 4 0 0 0 0.60536 1 38381 38381 13.615 4.0709 1 11419000 + 22429 22048 15215 15504 26494 26494 0.04261886320182384 IFQDVLLQF 9 Unmodified _IFQDVLLQF_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8150634765625 2 561.813325 1121.6121 4.0043 0.0022497 -0.69253 -0.00038907 3.3118 0.0018606 561.8129905913685 99.509 0.17514 99.473 99.379 99.554 -0.036301 11 6 2 0 0 0 0.021948 1 55267 55267 78.149 10.806 1 6598000 22430 9279 15216 15505 26495 26495 0.05615486654187407 IFQEPVSKY 9 Unmodified _IFQEPVSKY_ 0 0 0 nc|ENSG00000080200|Q68DQ2-1|CRYBG3;ENSG00000080200|ENST00000389622|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.3124389648438 2 555.795132 1109.57571 1.1414 0.0006344 -0.23896 -0.00013281 0.90247 0.00050159 555.794828341091 66.516 0.323 66.525 66.361 66.684 0.0095596 22 15 3 0 0 0 0.20139 1 36464 36464 10.824 0 1 13298000 22431 1294 15217 15506 26496 26496 0.0253060975749122 IFQGNVHNF 9 Unmodified _IFQGNVHNF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2711181640625 2 538.269616 1074.52468 0.48829 0.00026283 2.2409 0.0012062 2.7292 0.001469 538.27135470589 40.702 0.33084 40.399 40.171 40.502 -0.30304 28 15 3 0 0 0 0.06187 1 21528 21528 42.095 6.0504 1 2598800 22432 830 15218 15507 26497 26497 -0.009602944967127769 IFQGNVHNF 9 Unmodified _IFQGNVHNF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2708129882812 2 538.269616 1074.52468 0.42757 0.00023015 -0.028461 -1.532E-05 0.39911 0.00021483 538.2697123280216 40.41 0.25309 40.415 40.276 40.529 0.0050545 26 11 3 0 0 0 0.010877 1 21519 21519 77.984 45.867 1 6175200 22433 830 15218 15507 26498 26498 -0.009602944967127769 IFQGNVHNF 9 Unmodified _IFQGNVHNF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2715454101562 2 538.269616 1074.52468 0.62109 0.00033432 1.0384 0.00055894 1.6595 0.00089326 538.2707942285355 45.64 0.24972 40.685 40.582 40.832 -4.9549 29 16 2 0 0 0 0.013472 1 28022 28022 70.716 22.37 1 17357000 22434 830 15218 15507 26499 26499 -0.009602944967127769 IFQRNQTSL 9 Unmodified _IFQRNQTSL_ 0 0 0 ENST00000586256.1_1_16:4784633-4796526:+|nuORF;ENSG00000166246|ENST00000299320|DNAAF8 ENST00000586256.1_1_16:4784633-4796526:+|nuORF ENST00000586256.1_1_16:4784633-4796526:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8006591796875 2 553.80128 1105.58801 0.56897 0.0003151 -2.8322 -0.0015685 -2.2632 -0.0012534 553.7994203556503 67.187 0.29765 66.705 66.525 66.822 -0.48218 16 13 2 0 0 0 0.43463 1 36642 36642 10.824 1.4408 1 2021800 22435 7458 15219 15508 26500 26500 0.03943646220523078 IFQRSYFVQLV 11 Unmodified _IFQRSYFVQLV_ 0 0 0 ENST00000453432.5_1_2:220094544-220097018:+|nuORF ENST00000453432.5_1_2:220094544-220097018:+|nuORF ENST00000453432.5_1_2:220094544-220097018:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.3877563476562 2 700.390262 1398.76597 NaN NaN NaN NaN NaN NaN NaN 58.344 1 58.283 57.783 58.783 -0.060719 0 0 0 0.73356 1 31773 31773 15.248 2.206 1 22436 13557 15220 15509 26501 26501 0.0825389641968286 IFQTCDEKKF 10 Unmodified _IFQTCDEKKF_ 0 0 0 ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.7468872070312 3 420.209396 1257.60636 0.43726 0.00018374 -1.588 -0.00066729 -1.1507 -0.00048355 420.54291851824615 47.809 0.14709 47.77 47.68 47.827 -0.038647 13 6 3 0 0 0 0.23946 1 25766 25766 3.5871 1.5011 1 1084300 22437 7503 15221 15510 26502 26502 -0.012139799197939283 IFREIHQQI 9 Unmodified _IFREIHQQI_ 0 0 0 REV__nc|ENSG00000188107|Q5T1H1-4|EYS REV__nc|ENSG00000188107|Q5T1H1-4|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.22509765625 3 395.224257 1182.65094 -0.1663 -6.5726E-05 0.77271 0.0003054 0.60641 0.00023967 395.2245617257144 29.947 0.34775 29.977 29.811 30.159 0.030106 43 13 4 0 0 0 0.55144 1 15734 15734 2.4985 0.59211 1 12231000 + 22438 29862 15222 15511 26503 26503 0.06692212008556453 IFRIIHKFWKW 11 Unmodified _IFRIIHKFWKW_ 0 0 0 REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF REV__ENST00000409175.5_1_2:160599702-160602296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.31005859375 3 525.309996 1572.90816 -0.64819 -0.0003405 1.2391 0.00065089 0.59087 0.00031039 525.3106012146494 101.79 0.14943 101.74 101.64 101.78 -0.045853 7 4 2 0 0 0 0.74442 1 56570 56570 0.08335 0 1 8722200 + 22439 26680 15223 15512 26504 26504 0.14462153952536028 IFRKLKKV 8 Unmodified _IFRKLKKV_ 0 0 0 REV__ENSG00000255154|ENST00000461393|HTD2 REV__ENSG00000255154|ENST00000461393|HTD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8578491210938 2 516.358037 1030.70152 -0.48588 -0.00025089 -3.4193 -0.0017656 -3.9052 -0.0020165 516.8579518680182 103.55 0.16718 103.5 103.43 103.59 -0.04792 11 6 3 0 0 0 8.7369 1 57538 57538 0.79363 0 1 1650300 + 22440 24531 15224 15513 26505 26505 0.18739786124206148 IFRRRFRQFCY 11 Unmodified _IFRRRFRQFCY_ 0 0 0 ENSG00000187987|ENST00000289788|ZSCAN23 ENSG00000187987|ENST00000289788|ZSCAN23 ENSG00000187987|ENST00000289788|ZSCAN23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 796.4254150390625 2 796.424979 1590.83541 NaN NaN NaN NaN NaN NaN NaN 102.42 1 102.42 101.92 102.92 0 0 0 0 0.9435 1 56481 56481 0 0 1 22441 9614 15225 15514 26506 26506 0.0636207688748982 IFRSFAHGLLS 11 Unmodified _IFRSFAHGLLS_ 0 0 0 ENST00000577439.1_1_18:5241093-5241812:+|nuORF ENST00000577439.1_1_18:5241093-5241812:+|nuORF ENST00000577439.1_1_18:5241093-5241812:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5667419433594 3 416.568024 1246.68224 NaN NaN NaN NaN NaN NaN NaN 19.836 1 19.844 19.344 20.344 0.0078487 0 0 0 0.94165 1 10101 10101 1.3296 0 1 22442 15531 15226 15515 26507 26507 0.06876785042663869 IFRTLWRVK 9 Unmodified _IFRTLWRVK_ 0 0 0 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8762817382812 2 609.877125 1217.7397 NaN NaN NaN NaN NaN NaN NaN 17.368 1 17.382 16.882 17.882 0.013865 0 0 0 0.85737 1 8631 8631 0.6015 0 1 22443 8947 15227 15516 26508 26508 0.13953672038860532 IFSAAPSLLF 10 Unmodified _IFSAAPSLLF_ 0 0 0 REV__nc|ENSG00000115425|Q9BY49-2|PECR REV__nc|ENSG00000115425|Q9BY49-2|PECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3021240234375 2 533.302593 1064.59063 0.61176 0.00032625 -1.4531 -0.00077493 -0.84131 -0.00044867 533.3022838433839 101.78 0.099213 95.603 95.545 95.644 -6.1757 13 8 2 0 0 0 0.13184 1 68315 68315 42.095 4.1206 1 79308000 + 22444 18982 15228 15517 26509 26509 0.06092101625449686 IFSADVAELIY 11 Unmodified _IFSADVAELIY_ 0 0 0 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8270874023438 2 620.826629 1239.63871 0.43335 0.00026904 -1.2478 -0.00077466 -0.81443 -0.00050562 620.8256107516431 77.755 0.38039 77.807 77.607 77.987 0.052452 37 15 3 0 0 0 0.63851 1 42880 42880 9.3831 1.2276 1 11603000 22445 8200 15229 15518 26510 26510 0.028471307548443292 IFSDWLSF 8 Unmodified _IFSDWLSF_ 0 0 0 nc|ENSG00000172748|Q8TC21-3|ZNF596;nc|ENSG00000172748|Q8TC21-2|ZNF596;ENSG00000172748|ENST00000398612|ZNF596 nc|ENSG00000172748|Q8TC21-3|ZNF596 nc|ENSG00000172748|Q8TC21-3|ZNF596 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7484436035156 2 507.750193 1013.48583 -0.65924 -0.00033473 -2.4313 -0.0012345 -3.0905 -0.0015692 507.7486040286244 35.11 0.26484 34.888 34.736 35.001 -0.2224 20 11 3 0 0 0 0.55032 1 18378 18378 30.225 3.3412 1 1276800 22446 8250 15230 15519 26511 26511 -0.0203701985110456 IFSFMYMY 8 Unmodified _IFSFMYMY_ 0 0 0 ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENST00000559676.1_1_15:78777183-78780743:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8299560546875 3 367.83098 1100.47111 -0.010022 -3.6864E-06 -0.22933 -8.4354E-05 -0.23935 -8.804E-05 367.8307358958398 65.033 0.36607 65.033 64.853 65.219 0 30 16 2 0 0 0 0.80232 1 36234 36234 3.5965 0 1 3421700 22447 15300 15231 15520 26512 26512 -0.07510551315112934 IFSGIKKKTE 10 Unmodified _IFSGIKKKTE_ 0 0 0 ENST00000448560.1_1_X:144258105-144258411:+|nuORF ENST00000448560.1_1_X:144258105-144258411:+|nuORF ENST00000448560.1_1_X:144258105-144258411:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8439331054688 2 575.845156 1149.67576 2.393 0.001378 -2.2904 -0.0013189 0.10268 5.9127E-05 575.8436835637231 95.958 0.34863 95.962 95.737 96.085 0.004158 34 12 4 0 0 0 0.54684 2 53351 53253;53351 13.906 5.1606 1 6821400 22448 13494 15232 15521 26513;26514 26514 0.10690847091291289 IFSIKPLQF 9 Unmodified _IFSIKPLQF_ 0 0 0 ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8273315429688 2 546.826235 1091.63792 0.10346 5.6572E-05 -0.5913 -0.00032334 -0.48784 -0.00026676 546.8262431555895 80.035 0.3606 80.093 79.824 80.185 0.057587 38 14 4 0 0 0 0.0036082 2 44165 44165;44271 123.45 72.596 1 25693000 22449 6099 15233 15522 26515;26516 26515 0.0957638089644206 IFSIKPLQF 9 Unmodified _IFSIKPLQF_ 0 0 0 ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 ENSG00000151233|ENST00000398675|GXYLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3256225585938 2 546.826235 1091.63792 1.2799 0.00069991 -2.3602 -0.0012906 -1.0802 -0.00059069 547.326184075725 96.566 0.38725 90.39 90.185 90.572 -6.1757 77 22 5 0 0 0 0.0085164 1 63969 63969 99.799 62.724 1 301310000 22450 6099 15233 15522 26517 26517 0.0957638089644206 IFSKFDQF 8 Unmodified _IFSKFDQF_ 0 0 0 nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ENST00000473113.1_1_2:25817997-25830150:-|nuORF;ENST00000493386.5_1_2:25799670-25819155:-|nuORF;nc|ENSG00000138101|O60941-6|DTNB nc|ENSG00000138101|O60941-3|DTNB nc|ENSG00000138101|O60941-3|DTNB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.2637329101562 2 516.263468 1030.51238 0.71616 0.00036973 0.28172 0.00014544 0.99788 0.00051517 516.2636582469694 101.65 0.095123 95.472 95.429 95.524 -6.1757 9 4 3 0 0 0 8.7369 1 68250 68250 15.768 0 1 9456700 22451 5018 15234 15523 26518 26518 -0.0016533095977138146 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8754272460938 3 368.874454 1103.60153 -0.10264 -3.7862E-05 0.54546 0.00020121 0.44282 0.00016334 368.87454439799205 44.501 0.27774 44.479 44.346 44.623 -0.022064 36 14 3 0 0 0 0.040683 2 23847 23847;23951 46.022 28.58 1 36223000 22452 1086 15235 15524 26519;26520 26519 0.05387503999759247 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8092041015625 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 44.568 1 44.546 44.046 45.046 -0.022064 0 0 0 0.026638 1 23916 23916 70.332 16.756 1 22453 1086 15235 15524 26521 26521 0.05387503999759247 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.874755859375 3 368.874454 1103.60153 1.639 0.00060458 -0.28395 -0.00010474 1.355 0.00049984 368.8745135903302 72.022 0.43472 65.847 65.589 66.024 -6.1757 36 23 2 0 0 0 0.011671 1 47111 47111 69.338 40.844 1 15009000 22454 1086 15235 15524 26522 26522 0.05387503999759247 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MSMS AL20221201_MKP_PDAC_01 4 368.8746948242188 3 368.874454 1103.60153 NaN NaN NaN NaN NaN NaN NaN 71.503 1 65.327 64.827 65.827 -6.1757 0 0 0 0.030047 1 46732 46732 53.317 13.367 1 22455 1086 15235 15524 26523 26523 0.05387503999759247 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MSMS AL20221201_MKP_PDAC_01 4 368.8747253417969 3 368.874454 1103.60153 NaN NaN NaN NaN NaN NaN NaN 71.715 1 65.539 65.039 66.039 -6.1757 0 0 0 0.049786 1 46881 46881 46.022 13.237 1 22456 1086 15235 15524 26524 26524 0.05387503999759247 IFSKFTSKF 9 Unmodified _IFSKFTSKF_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.8484802246094 3 368.874454 1103.60153 1.4097 0.00052 -0.99079 -0.00036548 0.41892 0.00015453 368.87388800747 49.905 0.38234 44.366 44.183 44.565 -5.5391 62 23 3 0 0 0 0.071194 1 31285 31285 49.527 30.165 1 56267000 22457 1086 15235 15524 26525 26525 0.05387503999759247 IFSKIVSLF 9 Unmodified _IFSKIVSLF_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3217163085938 2 527.320786 1052.62702 0.73695 0.00038861 0.67864 0.00035786 1.4156 0.00074647 527.3211066242196 82.92 0.39314 82.982 82.788 83.181 0.062004 36 14 3 0 0 0 0.025842 1 45828 45828 57.722 7.789 1 13716000 22458 4251 15236 15525 26526 26526 0.10280978522177975 IFSKIVSLF 9 Unmodified _IFSKIVSLF_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3203735351562 2 527.320786 1052.62702 1.0692 0.0005638 -0.25643 -0.00013522 0.81275 0.00042858 527.3204296430617 99.395 0.1325 93.219 93.144 93.276 -6.1757 26 8 4 0 0 0 0.0093064 1 66151 66151 83.429 19.468 1 240020000 22459 4251 15236 15525 26527 26527 0.10280978522177975 IFSNISSIHRF 11 Unmodified _IFSNISSIHRF_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.9072875976562 3 440.906816 1319.69862 0.9374 0.00041331 -0.7998 -0.00035264 0.1376 6.067E-05 440.906493201097 49.422 0.24192 49.375 49.252 49.494 -0.046894 31 11 4 0 0 0 0.4178 1 26678 26678 12.929 5.4996 1 5943500 22460 3989 15237 15526 26528 26528 0.05155866208747284 IFSPMLFRF 9 Oxidation (M) _IFSPM(Oxidation (M))LFRF_ IFSPM(1)LFRF IFSPM(48)LFRF 0 0 1 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8115234375 2 587.309895 1172.60524 0.53041 0.00031152 0.82607 0.00048516 1.3565 0.00079668 587.310168590099 98.632 0.11845 92.456 92.389 92.508 -6.1757 20 8 3 0 0 0 0.044011 1 65461 65461 47.749 18.667 1 63507000 22461 5710 15238 15527 26529 26529 1037 0.02583850501946472 IFSPMLFRF 9 Unmodified _IFSPMLFRF_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3164672851562 2 579.312438 1156.61032 1.266 0.0007334 3.5788 0.0020732 4.8448 0.0028066 579.3152659546248 100.04 0.21038 93.862 93.804 94.014 -6.1757 22 12 3 0 0 0 0.15882 1 66823 66823 29.082 5.061 1 28412000 22462 5710 15238 15528 26530 26530 0.0382815436457804 IFSPTSNLLLL 11 Unmodified _IFSPTSNLLLL_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3612060546875 2 609.360639 1216.70673 0.90151 0.00054934 0.42025 0.00025608 1.3218 0.00080542 609.3608823258862 101.25 0.074593 95.075 95.032 95.107 -6.1757 10 4 3 0 0 0 0.00013798 1 67922 67922 92.653 32.579 1 26474000 22463 10031 15239 15529 26531 26531 0.10704000405530678 IFSPVFNFF 9 Unmodified _IFSPVFNFF_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2899169921875 2 559.289485 1116.56442 0.96824 0.00054153 -0.45038 -0.00025189 0.51786 0.00028963 559.2892204071168 102.04 0.085098 95.865 95.833 95.918 -6.1757 5 3 2 0 0 0 0.37804 1 68514 68514 13.508 3.434 1 3116600 22464 4967 15240 15530 26532 26532 0.010798324540019166 IFSQKLGYLLF 11 Unmodified _IFSQKLGYLLF_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MSMS AL20221201_MKP_PDAC_01 4 664.883056640625 2 664.884281 1327.75401 NaN NaN NaN NaN NaN NaN NaN 99.946 1 93.771 93.271 94.271 -6.1757 0 0 0 0.04712 1 66720 66720 63.227 32.591 1 22465 8280 15241 15531 26533 26533 0.10324279676524384 IFSSHFLIL 9 Unmodified _IFSSHFLIL_ 0 0 0 REV__ENST00000367607.7_2_1:180082752-180082971:+|nuORF REV__ENST00000367607.7_2_1:180082752-180082971:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 538.8139038085938 2 538.810585 1075.60662 NaN NaN NaN NaN NaN NaN NaN 98.193 1 92.017 91.517 92.517 -6.1757 0 0 0 0.096036 1 65104 65104 44.407 3.9584 1 + 22466 25995 15242 15532 26534 26534 0.07183807862384128 IFSSVFFHFF 10 Unmodified _IFSSVFFHFF_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|159|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|159|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2165832519531 3 426.54997 1276.62808 0.36544 0.00015588 -0.49661 -0.00021183 -0.13117 -5.5949E-05 426.5499163250201 48.511 0.33505 48.467 48.359 48.694 -0.04369 53 16 4 0 0 0 0.68719 1 26285 26285 2.086 0 1 15831000 + 22467 29423 15243 15533 26535 26535 0.000831928910656643 IFSTITSKMNL 11 Oxidation (M) _IFSTITSKM(Oxidation (M))NL_ IFSTITSKM(1)NL IFSTITSKM(41)NL 0 0 1 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000593455.5_1_19:40486165-40487209:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.8403930664062 2 635.839213 1269.66387 1.2686 0.0008066 -0.70866 -0.0004506 0.55989 0.000356 635.838526604167 46.687 0.34218 46.653 46.491 46.834 -0.033417 30 16 2 0 0 0 0.11513 1 25096 25096 40.725 19.188 1 2011300 22468 468 15244 15534 26536 26536 64 0.03982862285806732 IFSTKEWF 8 Unmodified _IFSTKEWF_ 0 0 0 ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10 ENSG00000241322|ENST00000395906|FBXW10B ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2715454101562 2 529.271293 1056.52803 0.18196 9.6304E-05 0.82083 0.00043444 1.0028 0.00053075 529.2713238355431 79.679 0.38155 79.734 79.495 79.876 0.05497 24 14 2 0 0 0 0.76859 1 44026 44026 11.114 1.767 1 1644200 22469 8160 15245 15535 26537 26537 0.002029555572789832 IFSTRAHVF 9 Unmodified _IFSTRAHVF_ 0 0 0 ENST00000599808.1_1_19:19049437-19049791:-|nuORF;nc|ENSG00000051128|Q9NSC5-4|HOMER3;nc|ENSG00000051128|Q9NSC5-3|HOMER3;nc|ENSG00000152413|Q86YM7-3|HOMER1;nc|ENSG00000152413|Q86YM7-2|HOMER1;nc|ENSG00000051128|Q9NSC5-5|HOMER3;ENSG00000152413|ENST00000334082|HOMER1;nc|ENSG00000051128|Q9NSC5-2|HOMER3;ENSG00000051128|ENST00000392351|HOMER3 ENST00000599808.1_1_19:19049437-19049791:-|nuORF ENST00000599808.1_1_19:19049437-19049791:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.866455078125 3 359.866181 1076.57671 0.18263 6.5724E-05 0.4002 0.00014402 0.58283 0.00020974 359.8663290210513 39.316 0.25352 39.328 39.174 39.427 0.011456 26 11 3 0 0 0 0.36964 1 20924 20924 13.615 4.0709 1 2944500 22470 731 15246 15536 26538 26538 0.04148868917013715 IFSTSISNVN 10 Unmodified _IFSTSISNVN_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2815551757812 2 541.279846 1080.54514 -0.21234 -0.00011493 -2.0587 -0.0011143 -2.2711 -0.0012293 541.2785563152796 53.481 0.38077 53.418 53.136 53.517 -0.063423 32 18 3 0 0 0 0.60623 1 28976 28976 10.824 2.2306 1 6756200 22471 359 15247 15537 26539 26539 0.008088313724329055 IFSTVLGF 8 Unmodified _IFSTVLGF_ 0 0 0 ENSG00000177174|ENST00000317861|OR14C36 ENSG00000177174|ENST00000317861|OR14C36 ENSG00000177174|ENST00000317861|OR14C36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2497253417969 2 442.249829 882.485105 1.4958 0.00066151 1.6439 0.00072701 3.1397 0.0013885 442.2502833969095 100.1 0.14149 93.926 93.855 93.996 -6.1757 11 8 2 0 0 0 0.80044 1 66875 66875 6.3541 0 1 11781000 22472 8662 15248 15538 26540 26540 0.03916185499861058 IFTARLYYF 9 Unmodified _IFTARLYYF_ 0 0 0 ENSG00000128394|ENST00000308521|APOBEC3F;ENSG00000244509|ENST00000361441|APOBEC3C ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000128394|ENST00000308521|APOBEC3F MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3209838867188 2 597.321317 1192.62808 0.9184 0.00054858 -0.65334 -0.00039026 0.26506 0.00015833 597.3209388946287 95.736 0.27843 89.56 89.399 89.678 -6.1757 33 17 2 0 0 0 0.0094097 2 63348 63348;63464 82.529 50.224 1 69772000 22473 4065 15249 15539 26541;26542 26541 0.03947192891064333 IFTATMSLGRP 11 Unmodified _IFTATMSLGRP_ 0 0 0 REV__TUBB1|p.A364T|1|0.21|ENSG00000101162|chr20:59024517-59024517|G/A|missense_variant REV__TUBB1|p.A364T|1|0.21|ENSG00000101162|chr20:59024517-59024517|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.31982421875 2 597.320991 1192.62743 0.025909 1.5476E-05 -1.2907 -0.00077096 -1.2648 -0.00075548 597.3200411727255 76.274 0.38452 76.322 76.133 76.518 0.047943 44 15 4 0 0 0 0.26767 1 42022 42022 28.495 2.2264 1 20939000 + 22474 30128 15250 15540 26543 26543 0.03882030179738649 IFTDIFHYL 9 Unmodified _IFTDIFHYL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8062133789062 2 584.8055 1167.59645 0.90194 0.00052746 -0.52554 -0.00030734 0.3764 0.00022012 584.8052682519781 100.5 0.14804 94.328 94.241 94.389 -6.1757 13 8 2 0 0 0 0.0081063 1 67221 67221 93.883 40.308 1 35218000 22475 3021 15251 15541 26544 26544 0.019352001371316874 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2830810546875 2 543.284931 1084.55531 0.016457 8.9408E-06 -0.122 -6.6281E-05 -0.10554 -5.734E-05 543.2848229428939 59.869 0.35141 59.378 59.214 59.566 -0.49079 41 17 3 0 0 0 0.023481 2 32556 32556;32669 60.074 7.8056 1 15099000 22476 1266 15252 15542 26545;26546 26545 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2830810546875 2 543.284931 1084.55531 0.28363 0.00015409 -0.11969 -6.5024E-05 0.16394 8.9066E-05 543.2848261149599 59.581 0.62378 59.528 59.273 59.897 -0.053059 85 31 4 0 0 0 0.062454 1 32373 32373 41.956 8.5106 1 234690000 22477 1266 15252 15542 26547 26547 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.284912109375 2 543.284931 1084.55531 0.67752 0.00036809 -0.64802 -0.00035206 0.029497 1.6026E-05 543.2842610511183 66.085 0.87767 59.91 59.659 60.537 -6.1757 141 50 4 0 0 0 0.0090524 4 43133 42879;43007;43133;43259 85.642 26.963 1 254000000 22478 1266 15252 15542 26548;26549;26550;26551 26550 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2859497070312 2 543.284931 1084.55531 0.58978 0.00032042 0.19859 0.00010789 0.78837 0.00042831 543.2848340548433 66.987 0.81558 60.811 60.537 61.352 -6.1757 83 45 3 0 0 0 0.011671 3 43527 43527;43661;43812 75.761 25.828 1 32503000 22479 1266 15252 15542 26552;26553;26554 26552 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2841796875 2 543.284931 1084.55531 0.51189 0.0002781 -0.22792 -0.00012382 0.28397 0.00015428 543.2846786437577 68.083 0.97972 61.908 61.352 62.332 -6.1757 126 57 3 0 0 0 0.012668 2 44118 44118;44257 72.968 16.791 1 85820000 22480 1266 15252 15542 26555;26556 26555 0.016414390976706272 IFTDLSSRF 9 Unmodified _IFTDLSSRF_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 543.284931 1084.55531 0.36553 0.00019859 1.2193 0.00066243 1.5848 0.00086102 543.2859107555386 59.331 0.20545 59.331 59.217 59.423 0 -0.081409 0.001429 NaN 60.074 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1515000 22481 1266 15252 15542 0.016414390976706272 IFTDVALKF 9 Unmodified _IFTDVALKF_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3031616210938 2 527.302593 1052.59063 0.25101 0.00013236 1.1284 0.00059502 1.3794 0.00072738 527.3031276132441 74.478 0.38257 74.524 74.321 74.704 0.045967 55 16 5 0 0 0 0.010611 2 41102 41000;41102 78.728 27.873 1 36861000 22482 3856 15253 15543 26557;26558 26558 0.06644101625465737 IFTEETYTF 9 Unmodified _IFTEETYTF_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7669677734375 2 575.76878 1149.52301 0.633 0.00036446 -0.40413 -0.00023269 0.22887 0.00013177 575.7685751131283 67.528 0.29466 67.046 66.914 67.208 -0.48219 27 12 3 0 0 0 0.12841 1 36886 36886 30.225 14.378 1 1786500 22483 4635 15254 15544 26559 26559 -0.045773930960194775 IFTEETYTF 9 Unmodified _IFTEETYTF_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 575.76878 1149.52301 0.57315 0.00033 0.14938 8.601E-05 0.72253 0.00041601 575.768875288993 66.947 0.20174 66.947 66.839 67.04 0 -0.049176 0.00044254 NaN 30.225 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1019000 22484 4635 15254 15544 -0.045773930960194775 IFTGRNAYF 9 Unmodified _IFTGRNAYF_ 0 0 0 ENST00000423113.5_1_10:33218934-33221518:-|nuORF ENST00000423113.5_1_10:33218934-33221518:-|nuORF ENST00000423113.5_1_10:33218934-33221518:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7803344726562 2 544.779816 1087.54508 1.2151 0.00066195 -0.27964 -0.00015234 0.93544 0.00050961 544.7796864081832 49.945 0.3037 49.896 49.723 50.027 -0.048824 36 14 3 0 0 0 0.040683 1 27005 27005 49.554 11.403 1 11345000 22485 13129 15255 15545 26560 26560 0.004808761630556546 IFTLHKKTDI 10 Unmodified _IFTLHKKTDI_ 0 0 0 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3585815429688 2 608.358431 1214.70231 0.82674 0.00050296 -1.2107 -0.00073655 -0.38398 -0.0002336 608.3579072994017 81.043 0.35186 80.551 80.334 80.686 -0.49248 46 18 3 0 0 0 0.46514 1 44416 44416 18.146 0 1 13598000 22486 9649 15256 15546 26561 26561 0.10354535982605739 IFTLHKKTDI 10 Unmodified _IFTLHKKTDI_ 0 0 0 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 ENSG00000188321|ENST00000603380|ZNF559 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.358642578125 2 608.358431 1214.70231 0.16693 0.00010155 -0.71747 -0.00043648 -0.55053 -0.00033492 608.3581937911443 80.121 0.47541 80.179 79.98 80.455 0.057587 65 23 4 0 0 0 0.35903 1 44216 44216 24.021 0 1 369670000 22487 9649 15256 15546 26562 26562 0.10354535982605739 IFTPIVEHL 9 Unmodified _IFTPIVEHL_ 0 0 0 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 ENSG00000115946|ENST00000263657|PNO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.808837890625 2 534.808042 1067.60153 -0.158 -8.4502E-05 0.77816 0.00041617 0.62016 0.00033167 534.8085159095419 69.781 0.26696 69.302 69.134 69.401 -0.47903 19 11 2 0 0 0 0.06187 1 38131 38131 42.095 23.96 1 1273900 22488 3177 15257 15547 26563 26563 0.07043503999761924 IFTPKPTLF 9 Unmodified _IFTPKPTLF_ 0 0 0 ENST00000489922.5_1_13:73544805-73590054:+|nuORF;ENST00000469712.1_1_13:73543850-73590054:+|nuORF;nc|ENSG00000083535|Q8WXW3-2|PIBF1;nc|ENSG00000083535|Q8WXW3-4|PIBF1;ENSG00000083535|ENST00000326291|PIBF1 ENST00000489922.5_1_13:73544805-73590054:+|nuORF ENST00000489922.5_1_13:73544805-73590054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3135986328125 2 532.312961 1062.61137 0.38841 0.00020675 -0.027092 -1.4422E-05 0.36132 0.00019233 532.3128707323087 67.379 0.31686 67.397 67.197 67.514 0.018036 33 15 3 0 0 0 0.029718 1 36974 36974 55.503 9.8031 1 6784600 22489 1367 15258 15548 26564 26564 0.08256692005124933 IFTVSYSS 8 Unmodified _IFTVSYSS_ 0 0 0 ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4464111328125 1 903.445825 902.438549 -0.026387 -2.384E-05 -0.68738 -0.00062101 -0.71377 -0.00064485 903.4449977660116 62.246 1.0942 62.246 61.728 62.823 0 75 57 2 0 0 0 0.67481 1 34972 34972 19.439 10.092 1 3251200 22490 2411 15259 15549 26565 26565 -0.01657299122086897 IFVAESWAQTY 11 Unmodified _IFVAESWAQTY_ 0 0 0 REV__ENSG00000009724|ENST00000400897|MASP2 REV__ENSG00000009724|ENST00000400897|MASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.8200073242188 2 657.821878 1313.6292 -0.47568 -0.00031291 -3.0949 -0.0020359 -3.5706 -0.0023488 657.8202132673011 41.679 0.142 41.679 41.589 41.731 0 11 6 2 0 0 0 0.28407 1 22526 22526 27.629 9.4825 1 3797700 + 22491 17036 15260 15550 26566 26566 -0.01506637530678745 IFVAESWAQTY 11 Unmodified _IFVAESWAQTY_ 0 0 0 REV__ENSG00000009724|ENST00000400897|MASP2 REV__ENSG00000009724|ENST00000400897|MASP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 657.821878 1313.6292 -0.47568 -0.00031291 -3.0949 -0.0020359 -3.5706 -0.0023488 657.8202132673011 41.679 0.142 41.679 41.589 41.731 0 0 0 NaN 27.629 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3797700 + 22492 17036 15260 15550 -0.01506637530678745 IFVARLYYF 9 Unmodified _IFVARLYYF_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3327026367188 2 596.331685 1190.64882 1.6283 0.00097101 0.23811 0.00014199 1.8664 0.001113 596.3316947717508 81.709 0.49933 81.769 81.507 82.006 0.059929 49 19 3 0 0 0 0.013323 2 45216 45114;45216 71.134 45.734 1 16695000 22493 10663 15261 15551 26567;26568 26568 0.06111783270739579 IFVARLYYF 9 Unmodified _IFVARLYYF_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3324584960938 2 596.331685 1190.64882 1.157 0.00068993 0.065369 3.8982E-05 1.2223 0.00072891 596.3317293854736 98.268 0.14812 92.093 92.014 92.163 -6.1757 21 9 3 0 0 0 0.0082281 1 65147 65147 92.822 54.647 1 88671000 22494 10663 15261 15551 26569 26569 0.06111783270739579 IFVCDETELVF 11 Unmodified _IFVCDETELVF_ 0 0 0 REV__ENSG00000174236|ENST00000310791|REP15 REV__ENSG00000174236|ENST00000310791|REP15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.8800048828125 3 438.881057 1313.62134 NaN NaN NaN NaN NaN NaN NaN 30.951 1 30.848 30.348 31.348 -0.10269 0 0 0 0.94165 1 16074 16074 0.45452 0 1 + 22495 22778 15262 15552 26570 26570 -0.022925328424889813 IFVITHHLL 9 Unmodified _IFVITHHLL_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8896179199219 3 364.890327 1091.64915 0.74544 0.000272 -1.0712 -0.00039087 -0.32576 -0.00011887 364.8897654641771 57.896 0.23631 57.83 57.714 57.95 -0.066036 32 11 4 0 0 0 0.15471 1 31510 31510 27.629 18.883 1 4415600 22496 7184 15263 15553 26571 26571 0.10699202990599588 IFVITHHLL 9 Unmodified _IFVITHHLL_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8912658691406 3 364.890327 1091.64915 1.5231 0.00055575 -0.4587 -0.00016738 1.0644 0.00038838 364.8906124462252 91.412 0.2914 85.236 85.059 85.351 -6.1757 23 15 2 0 0 0 0.094149 1 60423 60423 34.402 25.019 1 12731000 22497 7184 15263 15553 26572 26572 0.10699202990599588 IFVKTLVTF 9 Unmodified _IFVKTLVTF_ 0 0 0 ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR ENSG00000171105|ENST00000302850|INSR ENSG00000171105|ENST00000302850|INSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3291625976562 2 534.328611 1066.64267 0.27257 0.00014564 0.83232 0.00044473 1.1049 0.00059037 534.329013095167 74.705 0.35191 74.751 74.547 74.899 0.045967 35 15 3 0 0 0 0.032796 1 41140 41140 53.833 11.993 1 2276800 22498 8062 15264 15554 26573 26573 0.1120126503924439 IFVKTLVTF 9 Unmodified _IFVKTLVTF_ 0 0 0 ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR ENSG00000171105|ENST00000302850|INSR ENSG00000171105|ENST00000302850|INSR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.29541015625 2 534.328611 1066.64267 0.96818 0.00051733 -0.7426 -0.00039679 0.22558 0.00012054 534.3279412064118 95.037 0.3618 88.862 88.642 89.004 -6.1757 40 19 3 0 0 0 0.11314 1 62921 62921 31.268 9.7314 1 17271000 22499 8062 15264 15554 26574 26574 0.1120126503924439 IFVLFLFGF 9 Unmodified _IFVLFLFGF_ 0 0 0 REV__ENSG00000101337|ENST00000398022|TM9SF4;REV__ENSG00000125304|ENST00000376387|TM9SF2 REV__ENSG00000101337|ENST00000398022|TM9SF4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.847412109375 2 551.820421 1101.62629 0.3321 0.00018326 1.7325 0.00095602 2.0646 0.0011393 551.8209921235219 61.031 0.25899 60.987 60.845 61.104 -0.043507 19 12 2 0 0 0 0.17158 1 33226 33226 20.871 3.9289 1 3070400 + 22500 18161;19485 15265 15555 26575 26575 0.07954183873130205 IFVQTSRLL 9 Unmodified _IFVQTSRLL_ 0 0 0 REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF REV__ENST00000583655.5_1_17:73127100-73127247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.5538940429688 3 359.553603 1075.63898 0.8499 0.00030558 -0.62181 -0.00022357 0.22808 8.2009E-05 359.5534869990152 42.774 0.22702 42.774 42.682 42.909 0 18 11 2 0 0 0 0.50598 1 23170 23170 7.1017 2.2047 1 2406700 + 22501 29032 15266 15556 26576 26576 0.1041859526535518 IFYDLNNSFF 10 Unmodified _IFYDLNNSFF_ 0 0 0 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2039794921875 3 427.20464 1278.59209 0.44465 0.00018996 -0.54173 -0.00023143 -0.097082 -4.1474E-05 427.2044527988381 40.137 0.18769 40.142 40.088 40.276 0.0050545 14 8 2 0 0 0 0.66569 1 21433 21433 3.5871 1.8448 1 1638700 + 22502 21698 15267 15557 26577 26577 -0.036063090764628214 IFYDLNNSFF 10 Unmodified _IFYDLNNSFF_ 0 0 0 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 427.20464 1278.59209 0.44465 0.00018996 -0.54173 -0.00023143 -0.097082 -4.1474E-05 427.2044527988381 40.137 0.18769 40.142 40.088 40.276 0.0050545 0.033927 0.00013709 NaN 3.5871 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1638700 + 22503 21698 15267 15557 -0.036063090764628214 IFYDLNNSFF 10 Unmodified _IFYDLNNSFF_ 0 0 0 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 REV__nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 427.20464 1278.59209 0.73361 0.0003134 0.0099201 4.2379E-06 0.74353 0.00031764 427.2048352270194 44.838 0.088501 39.986 39.918 40.007 -4.852 -0.12283 0.0008441 NaN 3.5871 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 5775200 + 22504 21698 15267 15557 -0.036063090764628214 IFYEWRKMHRR 11 Unmodified _IFYEWRKMHRR_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5 REV__ENSG00000198734|ENST00000367797|F5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.4287719726562 2 811.430261 1620.84597 NaN NaN NaN NaN NaN NaN NaN 85.066 1 85.129 84.629 85.629 0.063171 0 0 0 0.9428 1 47089 47089 1.4819 1.1749 1 + 22505 24048 15268 15558 26578 26578 0.06038059541879193 IFYFLSKTGYF 11 Unmodified _IFYFLSKTGYF_ 0 0 0 REV__ENST00000271469.7_2_1:162569461-162569569:+|nuORF REV__ENST00000271469.7_2_1:162569461-162569569:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 693.3580322265625 2 693.360639 1384.70673 NaN NaN NaN NaN NaN NaN NaN 99.671 1 93.496 92.996 93.996 -6.1757 0 0 0 0.69464 1 66447 66447 17.113 0.96379 1 + 22506 25139 15269 15559 26579 26579 0.02976000405533341 IFYPETTDVY 10 Unmodified _IFYPETTDVY_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5328369140625 3 416.532533 1246.57577 0.37716 0.0001571 1.5577 0.00064882 1.9348 0.00080592 416.53314523447636 49.002 0.19555 48.63 48.539 48.734 -0.37172 19 9 3 0 0 0 0.66569 1 26331 26331 3.5871 0 1 1990700 22507 5714 15270 15560 26580 26580 -0.037654350332104514 IFYRKMLLI 9 Unmodified _IFYRKMLLI_ 0 0 0 REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5790405273438 3 399.578984 1195.71512 0.9802 0.00039167 -0.3899 -0.0001558 0.59029 0.00023587 399.57882596573467 33.327 0.46503 29.342 29.143 29.608 -3.9853 75 27 4 0 0 0 0.2001 1 19183 19183 21.537 2.8158 1 172700000 + 22508 27224 15271 15561 26581 26581 0.12509275841171075 IFYRYTYISYP 11 Unmodified _IFYRYTYISYP_ 0 0 0 REV__ENSG00000139977|ENST00000556492|NAA30 REV__ENSG00000139977|ENST00000556492|NAA30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.372802734375 2 743.374278 1484.734 -0.33383 -0.00024816 -2.8523 -0.0021203 -3.1862 -0.0023685 743.3723193184258 56.104 0.17313 56.035 55.942 56.115 -0.068737 15 8 2 0 0 0 0.46578 1 30501 30501 18.146 1.0335 1 4011000 + 22509 20443 15272 15562 26582 26582 0.0110248394591963 IFYRYTYISYP 11 Unmodified _IFYRYTYISYP_ 0 0 0 REV__ENSG00000139977|ENST00000556492|NAA30 REV__ENSG00000139977|ENST00000556492|NAA30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.917724609375 3 495.918611 1484.734 0.82886 0.00041105 -0.15996 -7.9325E-05 0.6689 0.00033172 496.2541333716004 69.51 1.2947 63.335 62.633 63.928 -6.1757 129 71 3 0 0 0 0.56638 1 45439 45439 10.315 0 1 57419000 + 22510 20443 15272 15562 26583 26583 0.0110248394591963 IFYSVVYLIAF 11 Unmodified _IFYSVVYLIAF_ 0 0 0 REV__ENSG00000105983|ENST00000353442|LMBR1 REV__ENSG00000105983|ENST00000353442|LMBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.8742065429688 2 667.873382 1333.73221 NaN NaN NaN NaN NaN NaN NaN 81.713 1 81.218 80.718 81.718 -0.4952 0 0 0 0.94144 1 44743 44743 1.4819 0 1 + 22511 18480 15273 15563 26584 26584 0.07869474927952069 IFYSVVYLIAF 11 Unmodified _IFYSVVYLIAF_ 0 0 0 REV__ENSG00000105983|ENST00000353442|LMBR1 REV__ENSG00000105983|ENST00000353442|LMBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.8740234375 2 667.873382 1333.73221 1.4402 0.0009619 -0.18886 -0.00012613 1.2514 0.00083576 667.8733998547601 81.216 1.1264 81.276 80.705 81.832 0.059929 130 43 4 0 0 0 0.67371 1 45152 45152 6.7232 0.51738 1 6404000 + 22512 18480 15273 15563 26585 26585 0.07869474927952069 IFYVFKCI 8 Unmodified _IFYVFKCI_ 0 0 0 ENST00000544451.2_1_8:52730731-52730815:-|nuORF ENST00000544451.2_1_8:52730731-52730815:-|nuORF ENST00000544451.2_1_8:52730731-52730815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7840576171875 2 516.782982 1031.55141 0.28848 0.00014908 1.4775 0.00076354 1.766 0.00091262 516.7838313125307 102.28 0.061638 102.28 102.25 102.31 0 4 2 2 0 0 0 0.80624 1 56418 56418 2.8892 0 1 698650 22513 15080 15274 15564 26586 26586 0.03689678070259106 IFYVFKCI 8 Unmodified _IFYVFKCI_ 0 0 0 ENST00000544451.2_1_8:52730731-52730815:-|nuORF ENST00000544451.2_1_8:52730731-52730815:-|nuORF ENST00000544451.2_1_8:52730731-52730815:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.782982 1031.55141 0.25297 0.00013073 2.3919 0.0012361 2.6449 0.0013668 516.7843453442882 102.34 0.062355 102.23 102.17 102.24 -0.11613 -0.026514 0.00084288 NaN 2.8892 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1170300 22514 15080 15274 15564 0.03689678070259106 IGAAIDNFL 9 Unmodified _IGAAIDNFL_ 0 0 0 REV__ENSG00000166747|ENST00000299980|AP1G1 REV__ENSG00000166747|ENST00000299980|AP1G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.5036010742188 1 933.504009 932.496732 0.36104 0.00033703 0.1613 0.00015057 0.52234 0.0004876 933.5038537599766 80.455 0.27165 80.455 80.296 80.568 0 24 13 2 0 0 0 0.46577 1 44717 44717 9.3474 0 1 1068900 + 22515 22145 15275 15565 26587 26587 0.027783825231949777 IGADATWDSY 10 Unmodified _IGADATWDSY_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7404174804688 2 549.740554 1097.46655 0.50024 0.000275 -0.45646 -0.00025094 0.043773 2.4064E-05 549.7401539243193 54.929 0.45914 54.929 54.689 55.149 0 67 19 5 0 0 0 0.50944 1 30483 30483 15.847 1.0089 1 64660000 + 22516 23516;20820;22002 15276 15566 26588 26588 -0.0782802093265218 IGAETCWRTI 10 Unmodified _IGAETCWRTI_ 0 0 0 ENST00000366919.6_1_6:161491818-161491875:+|nuORF ENST00000366919.6_1_6:161491818-161491875:+|nuORF ENST00000366919.6_1_6:161491818-161491875:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.29736328125 2 575.289691 1148.56483 NaN NaN NaN NaN NaN NaN NaN 38.144 1 38.144 37.644 38.644 0 0 0 0 0.61997 1 20354 20354 20.415 1.1575 1 22517 12215 15277 15567 26589 26589 -0.003511158884748511 IGAEVYHNL 9 Unmodified _IGAEVYHNL_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2626037597656 2 508.263999 1014.51345 0.22263 0.00011315 -0.83139 -0.00042256 -0.60876 -0.00030941 508.2636965707346 40.247 0.20151 40.247 40.131 40.333 0 15 9 2 0 0 0 0.010611 1 21605 21605 78.728 34.956 1 4714800 22518 1135 15278 15568 26590 26590 0.006768834091303688 IGAGIVIADWL 11 Unmodified _IGAGIVIADWL_ 0 0 0 REV__ENSG00000179761|ENST00000323372|PIPOX REV__ENSG00000179761|ENST00000323372|PIPOX MSMS AL20221201_MKP_PDAC_01 4 564.3281860351562 2 564.326599 1126.63865 NaN NaN NaN NaN NaN NaN NaN 99.922 1 93.746 93.246 94.246 -6.1757 0 0 0 0.51453 1 66696 66696 24.021 8.1734 1 + 22519 23116 15279 15569 26591 26591 0.08039175545491162 IGANVSNFTF 10 Unmodified _IGANVSNFTF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2693481445312 2 535.269281 1068.52401 0.21927 0.00011737 -0.52335 -0.00028013 -0.30408 -0.00016276 535.2687410757717 70.58 0.21252 70.103 70.055 70.268 -0.47735 27 18 2 0 0 0 0.1942 1 38615 38615 34.402 22.761 1 2988200 22520 3388 15280 15570 26592 26592 -0.00751133936455517 IGANVSNFTF 10 Unmodified _IGANVSNFTF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2703247070312 2 535.269281 1068.52401 0.76918 0.00041172 0.77545 0.00041508 1.5446 0.0008268 535.2696908677559 77.805 0.44855 71.63 71.346 71.794 -6.1757 44 25 2 0 0 0 0.085354 2 50793 50793;50931 49.933 23.049 1 12521000 22521 3388 15280 15570 26593;26594 26593 -0.00751133936455517 IGATAGKLHTG 11 Unmodified _IGATAGKLHTG_ 0 0 0 ENST00000496336.1_1_7:65540843-65547929:+|nuORF;ENST00000487982.5_1_7:65541068-65551857:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL ENST00000496336.1_1_7:65540843-65547929:+|nuORF ENST00000496336.1_1_7:65540843-65547929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2867431640625 2 513.290548 1024.56654 0.23961 0.00012299 -1.8515 -0.00095034 -1.6119 -0.00082735 513.2898461313677 84.696 1.0401 78.52 77.837 78.877 -6.1757 80 59 2 0 0 0 0.088819 1 55946 55946 43.772 11.319 1 18933000 22522 3955 15281 15571 26595 26595 0.05524261191771984 IGATDLFQI 9 Unmodified _IGATDLFQI_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2688903808594 2 489.26875 976.522947 0.62997 0.00030822 0.22722 0.00011117 0.85719 0.0004194 489.2686119980781 87.333 0.29097 86.829 86.655 86.946 -0.50423 16 11 2 0 0 0 0.28047 1 47775 47775 18.135 4.6271 1 297080 + 22523 21294 15282 15572 26596 26596 0.033746516946507654 IGATDLFQI 9 Unmodified _IGATDLFQI_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.26875 976.522947 0.62997 0.00030822 0.22722 0.00011117 0.85719 0.0004194 489.2686119980781 87.333 0.29097 86.829 86.655 86.946 -0.50423 0 0 NaN 18.135 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 297080 + 22524 21294 15282 15572 0.033746516946507654 IGAYKETF 8 Unmodified _IGAYKETF_ 0 0 0 REV__ENSG00000214711|ENST00000403897|CAPN14 REV__ENSG00000214711|ENST00000403897|CAPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7423095703125 2 464.742368 927.470183 0.32812 0.00015249 0.42433 0.0001972 0.75245 0.00034969 464.74250307530804 68.45 0.29318 67.969 67.825 68.118 -0.48071 23 12 2 0 0 0 0.55063 1 37419 37419 30.198 3.8571 1 2258900 + 22525 24321 15283 15573 26597 26597 0.00354693631857117 IGDDSLDQL 9 Unmodified _IGDDSLDQL_ 0 0 0 REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2366027832031 2 488.235104 974.455655 0.22202 0.0001084 1.1816 0.00057689 1.4036 0.00068529 488.2353860452497 82.076 0.26946 82.076 81.938 82.207 0 23 13 2 0 0 0 0.54444 1 45507 45507 4.756 0 1 393640 + 22526 22230 15284 15574 26598 26598 -0.03259423306928966 IGDDSLDQL 9 Unmodified _IGDDSLDQL_ 0 0 0 REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2362976074219 2 488.235104 974.455655 0.74084 0.0003617 0.16026 7.8245E-05 0.9011 0.00043995 488.23537845878866 82.576 0.33191 82.081 81.895 82.227 -0.4952 32 13 3 0 0 0 0.48152 1 45158 45158 8.5933 0 1 1376600 + 22527 22230 15284 15574 26599 26599 -0.03259423306928966 IGDDSLDQL 9 Unmodified _IGDDSLDQL_ 0 0 0 REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF REV__ENST00000518839.1_1_8:141226147-141272748:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.235104 974.455655 0.22202 0.0001084 1.1816 0.00057689 1.4036 0.00068529 488.2353860452497 82.076 0.26946 82.076 81.938 82.207 0 -0.0022525 0.00069016 NaN 8.5933 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 393640 + 22528 22230 15284 15574 -0.03259423306928966 IGDETGFII 9 Unmodified _IGDETGFII_ 0 0 0 REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7526550292969 2 482.752933 963.491313 0.012183 5.8812E-06 0.16239 7.8393E-05 0.17457 8.4274E-05 482.75296552889307 71.681 0.39848 71.681 71.442 71.84 0 51 17 4 0 0 0 0.18465 1 39961 39961 24.674 0 1 5119200 + 22529 17069 15285 15575 26600 26600 0.008106589407248066 IGDETGFII 9 Unmodified _IGDETGFII_ 0 0 0 REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF REV__ENST00000554990.5_1_14:50886739-50915587:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7531127929688 2 482.752933 963.491313 0.90534 0.00043706 0.057288 2.7656E-05 0.96263 0.00046471 482.75288742022764 80.284 0.58517 74.108 73.806 74.391 -6.1757 106 33 4 0 0 0 0.18465 1 52782 52782 24.674 0 1 211110000 + 22530 17069 15285 15575 26601 26601 0.008106589407248066 IGDEVYFDDP 10 Unmodified _IGDEVYFDDP_ 0 0 0 REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29 REV__nc|ENSG00000168594|Q9UKF5-2|ADAM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2548217773438 2 585.253494 1168.49243 0.42247 0.00024725 1.0787 0.00063132 1.5012 0.00087856 585.2542505449446 59.922 0.69642 59.922 59.649 60.345 0 96 31 4 0 0 0 0.62068 1 33318 33318 10.074 0.6908 1 40234000 + 22531 22326 15286 15576 26602 26602 -0.08507171481028308 IGDGPQCRDY 10 Unmodified _IGDGPQCRDY_ 0 0 0 ENSG00000186432|ENST00000334256|KPNA4;ENST00000402742.1_1_6:85996357-85996766:+|nuORF;ENSG00000102753|ENST00000261667|KPNA3 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.779541015625 2 562.24548 1122.47641 0.24709 0.00013893 -2.0963 -0.0011786 -1.8492 -0.0010397 562.2443084092192 65.153 0.30714 65.153 65.013 65.32 0 21 12 2 0 0 0 0.22811 1 36431 36431 10.074 2.1638 1 1038700 22532 9475 15287 15577 26603 26603 -0.07993156198926954 IGDNDDDH 8 Unmodified _IGDNDDDH_ 0 0 0 REV__nc|ENSG00000137801|P07996-2|THBS1 REV__nc|ENSG00000137801|P07996-2|THBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.6705627441406 2 450.670128 899.325704 0.26204 0.00011809 0.1715 7.7289E-05 0.43354 0.00019538 450.6701206995579 76.047 0.37292 75.567 75.414 75.787 -0.47945 21 15 2 0 0 0 0.80624 1 41659 41659 2.8892 0 1 688510 + + 22533 16865 15288 15578 26604 26604 -0.12798599586085402 IGDPITTQF 9 Unmodified _IGDPITTQF_ 0 0 0 REV__ENSG00000174705|ENST00000311601|SH3PXD2B REV__ENSG00000174705|ENST00000311601|SH3PXD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2586669921875 2 496.258382 990.502212 NaN NaN NaN NaN NaN NaN NaN 74.064 1 74.064 73.564 74.564 0 0 0 0 0.82396 1 41221 41221 4.756 0 1 + 22534 22810 15289 15579 26605 26605 0.00658061315004943 IGDTALVVT 9 Unmodified _IGDTALVVT_ 0 0 0 REV__nc|ENSG00000165970|Q9Y345-3|SLC6A5 REV__nc|ENSG00000165970|Q9Y345-3|SLC6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.5035400390625 1 888.503674 887.496398 -0.25019 -0.00022229 0.44869 0.00039866 0.19849 0.00017636 888.5037943000079 71.503 0.16884 71.503 71.405 71.574 0 9 7 2 0 0 0 0.5029 1 39863 39863 7.2892 2.96 1 287770 + 22535 22070 15290 15580 26606 26606 0.04814962803322942 IGDTGKKPA 9 Unmodified _IGDTGKKPA_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 444.2013244628906 2 443.753267 885.491981 1.4429 0.00064031 0.67693 0.00030039 2.1199 0.0009407 443.7534021538142 35.95 0.28396 31.757 31.664 31.948 -4.1928 27 17 2 0 0 0 0.18521 1 20892 20892 16.942 1.0951 1 4041800 22536 7381 15291 15581 26607 26607 0.044654983804207404 IGDWLQERYES 11 Unmodified _IGDWLQERYES_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 698.3298950195312 2 698.330598 1394.64664 0.2079 0.00014518 0.083543 5.8341E-05 0.29144 0.00020352 698.3304896278889 53.003 0.38588 53.003 52.858 53.244 0 28 17 2 0 0 0 0.44182 1 29366 29366 19.362 7.1213 1 5243500 22537 16419 15292 15582 26608 26608 -0.034893419956688376 IGDWLQERYES 11 Unmodified _IGDWLQERYES_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 698.3306884765625 2 698.330598 1394.64664 NaN NaN NaN NaN NaN NaN NaN 50.215 1 50.215 49.715 50.715 0 0 0 0 0.81193 1 27675 27675 11.495 2.7493 1 22538 16419 15292 15582 26609 26609 -0.034893419956688376 IGDWLQERYES 11 Unmodified _IGDWLQERYES_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.3306884765625 2 698.330598 1394.64664 NaN NaN NaN NaN NaN NaN NaN 50.837 1 50.423 49.923 50.923 -0.41351 0 0 0 0.75116 1 27387 27387 14.405 2.1647 1 22539 16419 15292 15582 26610 26610 -0.034893419956688376 IGEKCMICF 9 Unmodified _IGEKCMICF_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|121|2|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|121|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2401123046875 2 522.239766 1042.46498 0.61982 0.00032369 -2.6165 -0.0013665 -1.9967 -0.0010428 522.2382778052647 66.996 0.52755 66.996 66.839 67.366 0 49 23 3 0 0 0 0.46577 1 37425 37425 9.3474 0 1 3753600 + 22540 29421 15293 15583 26611 26611 -0.05455392818271321 IGELTLPPM 9 Unmodified _IGELTLPPM_ 0 0 0 REV__ENSG00000004779|ENST00000007516|NDUFAB1 REV__ENSG00000004779|ENST00000007516|NDUFAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7685241699219 2 485.767529 969.520504 0.13768 6.688E-05 0.7877 0.00038264 0.92538 0.00044952 485.76799453097965 78.655 0.51416 78.169 77.971 78.485 -0.48596 41 20 3 0 0 0 0.46577 1 43056 43056 9.3474 0.75416 1 555350 + 22541 16950 15294 15584 26612 26612 0.034524799653581795 IGELTLPPM 9 Unmodified _IGELTLPPM_ 0 0 0 REV__ENSG00000004779|ENST00000007516|NDUFAB1 REV__ENSG00000004779|ENST00000007516|NDUFAB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.767529 969.520504 0.25451 0.00012363 2.9466 0.0014313 3.2011 0.001555 485.76880963298123 78.072 0.30762 78.072 78.03 78.337 0 -0.048836 0.0017571 NaN 9.3474 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 254720 + 22542 16950 15294 15584 0.034524799653581795 IGELTLPPM 9 Unmodified _IGELTLPPM_ 0 0 0 REV__ENSG00000004779|ENST00000007516|NDUFAB1 REV__ENSG00000004779|ENST00000007516|NDUFAB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 485.767529 969.520504 0.13768 6.688E-05 0.7877 0.00038264 0.92538 0.00044952 485.76799453097965 78.655 0.51416 78.169 77.971 78.485 -0.48596 0.048836 -0.00034033 NaN 9.3474 41 20 3 NaN NaN NaN NaN 0 NaN NaN 0 555350 + 22543 16950 15294 15584 0.034524799653581795 IGENLMNEMDI 11 Unmodified _IGENLMNEMDI_ 0 0 0 nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A nc|ENSG00000189180|Q06730|ZNF33A nc|ENSG00000189180|Q06730|ZNF33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.2890014648438 2 639.788863 1277.56317 0.40366 0.00025826 -1.7781 -0.0011376 -1.3744 -0.00087934 639.7877668189517 70.059 0.38376 70.092 69.885 70.269 0.033279 35 19 2 0 0 0 0.58219 1 38554 38554 12.241 4.0851 1 4100200 22544 9734 15295 15585 26613 26613 -0.06450537759383224 IGEVIVDMLY 10 Unmodified _IGEVIVDMLY_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2359008789062 2 576.304475 1150.5944 NaN NaN NaN NaN NaN NaN NaN 91.066 1 91.066 90.566 91.566 0 0 0 0 0.95103 1 50367 50367 5.7319 0.43497 1 + 22545 23951 15296 15586 26614 26614 0.025124033370275356 IGFFVKLIH 9 Unmodified _IGFFVKLIH_ 0 0 0 ENST00000461536.1_1_7:54823470-54826890:-|nuORF;ENSG00000132432|ENST00000352861|SEC61G;ENST00000460484.5_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF ENST00000461536.1_1_7:54823470-54826890:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 358.1906127929688 3 358.555055 1072.64334 1.089 0.00039046 -1.0472 -0.00037548 0.041791 1.4984E-05 358.5548009298343 17.407 0.17826 14.82 14.693 14.871 -2.5866 48 29 2 0 0 0 0.21767 1 9125 9125 2.9952 2.9952 1 3320400 22546 4405 15297 15587 26615 26615 0.10992104478941656 IGFFVSNYI 9 Unmodified _IGFFVSNYI_ 0 0 0 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2777709960938 2 530.279118 1058.54368 0.75904 0.00040251 -0.4109 -0.00021789 0.34815 0.00018462 530.2788049889589 50.074 0.43989 49.681 49.532 49.971 -0.3923 65 21 5 0 0 0 0.10734 1 26918 26918 32.305 1.0371 1 104090000 + 22547 29571 15298 15588 26616 26616 0.01675242074338712 IGFFVSNYI 9 Unmodified _IGFFVSNYI_ 0 0 0 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2822265625 2 530.279118 1058.54368 0.97249 0.00051569 1.3784 0.00073096 2.3509 0.0012466 530.2797075798242 49.716 0.21544 49.668 49.568 49.784 -0.048824 20 10 3 0 0 0 0.10734 1 26868 26868 32.305 3.8186 1 5839500 + 22548 29571 15298 15588 26617 26617 0.01675242074338712 IGFFVSNYI 9 Unmodified _IGFFVSNYI_ 0 0 0 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2595825195312 2 530.279118 1058.54368 0.97249 0.00051569 1.3784 0.00073096 2.3509 0.0012466 530.2797075798242 49.716 0.21544 49.668 49.568 49.784 -0.048824 20 10 3 0 0 0 0.18118 1 26824 26824 18.135 0 1 5839500 + 22549 29571 15298 15588 26618 26618 0.01675242074338712 IGFPSPEQ 8 Unmodified _IGFPSPEQ_ 0 0 0 REV__ENST00000357277.7_1_X:17043263-17065533:+|nuORF REV__ENST00000357277.7_1_X:17043263-17065533:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7195739746094 2 437.718893 873.423233 0.45004 0.00019699 0.50611 0.00022153 0.95614 0.00041852 437.7191211617636 99.749 0.13268 93.573 93.49 93.623 -6.1757 18 8 3 0 0 0 0.55032 1 66507 66507 30.225 0 1 48354000 + 22550 25847 15299 15589 26619 26619 -0.018541659192806037 IGGDDKRDV 9 Unmodified _IGGDDKRDV_ 0 0 0 REV__ENSG00000105767|ENST00000222374|CADM4 REV__ENSG00000105767|ENST00000222374|CADM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7484741210938 2 487.748713 973.482873 -0.41804 -0.0002039 0.69893 0.0003409 0.28089 0.000137 487.74902977931674 17.305 0.42853 17.305 17.034 17.462 0 172 89 2 0 0 0 0.10734 1 8478 8478 32.305 6.0373 1 1412800 + 22551 18456 15300 15590 26620 26620 -0.004928949759005263 IGGFFDTARF 10 Unmodified _IGGFFDTARF_ 0 0 0 REV__ENSG00000150961|ENST00000280551|SEC24D REV__ENSG00000150961|ENST00000280551|SEC24D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.253662109375 2 565.785099 1129.55564 0.025716 1.455E-05 0.82751 0.00046819 0.85323 0.00048274 565.7856450878229 37.428 0.26397 37.157 37.039 37.303 -0.27133 24 10 3 0 0 0 0.23693 1 19704 19704 6.2058 0.97511 1 3019600 + 22552 21042 15301 15591 26621 26621 -0.003951411825028117 IGGKHKKA 8 Unmodified _IGGKHKKA_ 0 0 0 REV__nc|ENSG00000157617|Q9Y426-2|C2CD2 REV__nc|ENSG00000157617|Q9Y426-2|C2CD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.2409973144531 2 419.766512 837.518471 0.89556 0.00037593 0.71182 0.0002988 1.6074 0.00067473 419.7666232984694 44.003 0.41563 39.238 38.95 39.366 -4.7648 40 26 2 0 0 0 8.7369 1 26743 26743 2.5775 0.27475 1 7900900 + 22553 21394 15302 15592 26622 26622 0.0932123206240476 IGGTLGQEM 9 Unmodified _IGGTLGQEM_ 0 0 0 REV__nc|ENSG00000197343|Q8N720-4|ZNF655 REV__nc|ENSG00000197343|Q8N720-4|ZNF655 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2033386230469 2 453.223485 904.432418 0.33674 0.00015262 0.16394 7.4299E-05 0.50068 0.00022692 453.2236316329775 49.056 0.36197 49.056 48.874 49.236 0 28 17 2 0 0 0 0.069627 1 26933 26933 46.021 3.9264 1 1832900 + 22554 29886 15303 15593 26623 26623 -0.02362140625268694 IGGTSLIIY 9 Unmodified _IGGTSLIIY_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5394287109375 1 936.54006 935.532783 -0.61249 -0.00057362 0.14355 0.00013444 -0.46894 -0.00043918 936.5400949630642 77.37 0.64143 76.888 76.603 77.244 -0.4826 88 29 4 0 0 0 0.0094915 1 42353 42353 81.864 7.4413 1 60018000 + 22555 22012 15304 15594 26624 26624 0.062438397000505574 IGGTSLIIY 9 Unmodified _IGGTSLIIY_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 936.5401000976562 1 936.54006 935.532783 0.4174 0.00039091 0.13332 0.00012486 0.55072 0.00051577 936.5399805447643 76.808 0.54495 76.858 76.676 77.221 0.05011 44 22 3 0 0 0 0.0094915 1 42422 42422 81.864 7.4413 1 8332800 + 22556 22012 15304 15594 26625 26625 0.062438397000505574 IGGTSLIIY 9 Unmodified _IGGTSLIIY_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5407104492188 1 936.54006 935.532783 0.21169 0.00019826 0.078384 7.341E-05 0.29007 0.00027166 936.5400338126057 84.559 0.80684 78.383 78.05 78.857 -6.1757 141 46 5 0 0 0 0.010877 1 55825 55825 77.984 3.5616 1 195430000 + 22557 22012 15304 15594 26626 26626 0.062438397000505574 IGGTTRESY 9 Unmodified _IGGTTRESY_ 0 0 0 REV__nc|ENSG00000147394|O15231-2|ZNF185 REV__nc|ENSG00000147394|O15231-2|ZNF185 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2446899414062 2 492.243264 982.471974 0.092489 4.5527E-05 1.507 0.00074182 1.5995 0.00078735 492.2439766886808 64.928 0.56442 64.928 64.63 65.194 0 56 25 3 0 0 0 0.49272 1 36342 36342 7.9102 0.62092 1 26931000 + 22558 20886 15305 15595 26627 26627 -0.01996297350194709 IGGWDQLSR 9 Unmodified _IGGWDQLSR_ 0 0 0 REV__ENSG00000271447|ENST00000605424|MMP28 REV__ENSG00000271447|ENST00000605424|MMP28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2678833007812 2 516.267073 1030.51959 NaN NaN NaN NaN NaN NaN NaN 16.456 1 16.456 15.956 16.956 0 0 0 0 0.67877 1 8025 8025 10.074 1.3285 1 + 22559 24629 15306 15596 26628 26628 0.005554016406676965 IGHDMLEVF 9 Unmodified _IGHDMLEVF_ 0 0 0 REV__ENSG00000155849|ENST00000310758|ELMO1 REV__ENSG00000155849|ENST00000310758|ELMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7584228515625 2 530.760235 1059.50592 0.51658 0.00027418 -2.8064 -0.0014895 -2.2898 -0.0012154 530.7586571160292 46.617 0.1963 46.28 46.131 46.327 -0.33664 11 9 2 0 0 0 0.12841 1 24975 24975 30.225 8.4782 1 2944900 + 22560 21293 15307 15597 26629 26629 -0.02145592182796463 IGHHLLLLSL 10 Unmodified _IGHHLLLLSL_ 0 0 0 ENST00000558523.1_1_14:102821996-102829188:-|nuORF ENST00000558523.1_1_14:102821996-102829188:-|nuORF ENST00000558523.1_1_14:102821996-102829188:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3502197265625 2 558.350409 1114.68626 1.715 0.00095755 -0.66878 -0.00037342 1.0462 0.00058413 558.3499093682125 107.08 0.81405 100.9 100.77 101.58 -6.1757 241 140 2 0 0 0 0.72196 2 71604 71604;71924 0.45834 0 1 5926300 22561 15278 15308 15598 26630;26631 26630 0.13350874536376978 IGHHLLLLSL 10 Unmodified _IGHHLLLLSL_ 0 0 0 ENST00000558523.1_1_14:102821996-102829188:-|nuORF ENST00000558523.1_1_14:102821996-102829188:-|nuORF ENST00000558523.1_1_14:102821996-102829188:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 558.3516235351562 2 558.350409 1114.68626 NaN NaN NaN NaN NaN NaN NaN 109.13 1 102.96 102.46 103.46 -6.1757 0 0 0 1.0019 1 72900 72900 0.45834 0 1 22562 15278 15308 15598 26632 26632 0.13350874536376978 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4984130859375 1 952.498589 951.491313 -0.25441 -0.00024233 -0.16295 -0.00015521 -0.41736 -0.00039754 952.498421825358 65.782 0.44862 65.782 65.528 65.976 0 64 21 4 0 0 0 0.0088975 2 36709 36609;36709 104.8 37.455 1 36551000 22563 10277 15309 15599 26633;26634 26634 0.013626589407067513 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 952.4967651367188 1 952.498589 951.491313 0.05198 4.9511E-05 -0.72253 -0.00068821 -0.67055 -0.0006387 952.4979062262564 66.298 0.37773 65.814 65.668 66.046 -0.48323 54 20 3 0 0 0 0.0083087 2 36147 36147;36257 104.8 25.941 1 19845000 22564 10277 15309 15599 26635;26636 26635 0.013626589407067513 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.752685546875 2 476.752933 951.491313 0.2483 0.00011838 0.14139 6.7409E-05 0.38969 0.00018579 476.7530069243418 66.319 0.42175 65.836 65.668 66.09 -0.48323 48 22 3 0 0 0 0.2001 1 36275 36275 23.148 1.4018 1 15124000 22565 10277 15309 15599 26637 26637 0.013626589407067513 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 952.49951171875 1 952.498589 951.491313 1.1722 0.0011166 -0.24676 -0.00023504 0.92549 0.00088152 952.4986477691792 65.836 0.30397 65.846 65.708 66.012 0.0095596 16 14 2 0 0 0 0.023164 1 36083 36083 60.39 12.044 1 2844000 22566 10277 15309 15599 26638 26638 0.013626589407067513 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7536315917969 2 476.752933 951.491313 0.8703 0.00041492 0.41945 0.00019997 1.2897 0.00061489 476.75313677022143 73.459 0.65334 67.283 66.97 67.623 -6.1757 79 31 3 0 0 0 0.087258 3 48023 47914;48023;48139 36.044 7.5574 1 130250000 22567 10277 15309 15599 26639;26640;26641 26640 0.013626589407067513 IGIDLGTTY 9 Unmodified _IGIDLGTTY_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 952.4996948242188 1 952.498589 951.491313 0.59432 0.00056609 -1.13 -0.0010763 -0.53566 -0.00051022 952.4979490914386 73.371 0.61964 67.195 66.97 67.589 -6.1757 68 29 3 0 0 0 0.0082281 3 48047 47932;48047;48162 97.075 31.465 1 165730000 22568 10277 15309 15599 26642;26643;26644 26643 0.013626589407067513 IGIGPVLNI 9 Unmodified _IGIGPVLNI_ 0 0 0 nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE nc|ENSG00000185973|Q9NVH6-4|TMLHE nc|ENSG00000185973|Q9NVH6-4|TMLHE MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2842712402344 2 448.284203 894.553853 1.7196 0.00077086 -0.066508 -2.9814E-05 1.6531 0.00074105 448.2839282804086 100.94 0.080284 94.768 94.717 94.798 -6.1757 8 4 2 0 0 0 0.10925 1 67630 67630 32.117 1.8922 1 22974000 22569 9436 15310 15600 26645 26645 0.10235849799562402 IGIGTSKFL 9 Unmodified _IGIGTSKFL_ 0 0 0 REV__nc|ENSG00000179593|O15296-2|ALOX15B REV__nc|ENSG00000179593|O15296-2|ALOX15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2842407226562 2 468.28166 934.548768 3.3994 0.0015919 2.9783 0.0013947 6.3777 0.0029866 468.2832468280258 97.963 0.30811 97.945 97.791 98.099 -0.018188 23 10 3 0 0 0 0.044011 1 54450 54450 47.749 3.8904 1 2415900 + 22570 29817 15311 15601 26646 26646 0.07887545936955576 IGIGTSKFL 9 Unmodified _IGIGTSKFL_ 0 0 0 REV__nc|ENSG00000179593|O15296-2|ALOX15B REV__nc|ENSG00000179593|O15296-2|ALOX15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2804565429688 2 468.28166 934.548768 1.5207 0.00071212 -4.3763 -0.0020493 -2.8556 -0.0013372 468.28008576185204 100.94 0.11371 94.76 94.701 94.815 -6.1757 15 6 3 0 0 0 0.036857 1 67628 67628 51.63 11.672 1 24032000 + 22571 29817 15311 15601 26647 26647 0.07887545936955576 IGIGTSKFL 9 Unmodified _IGIGTSKFL_ 0 0 0 REV__nc|ENSG00000179593|O15296-2|ALOX15B REV__nc|ENSG00000179593|O15296-2|ALOX15B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 468.28166 934.548768 0.32321 0.00015135 0.1739 8.1433E-05 0.49711 0.00023279 468.2822690134349 98.24 0.13058 98.047 97.969 98.099 -0.19321 0.051026 -0.0019607 NaN 47.749 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 167680 + 22572 29817 15311 15601 0.07887545936955576 IGIGTSKFL 9 Unmodified _IGIGTSKFL_ 0 0 0 REV__nc|ENSG00000179593|O15296-2|ALOX15B REV__nc|ENSG00000179593|O15296-2|ALOX15B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 468.28166 934.548768 3.3994 0.0015919 2.9783 0.0013947 6.3777 0.0029866 468.2832468280258 97.963 0.30811 97.945 97.791 98.099 -0.018188 -0.051026 0.00066584 NaN 47.749 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2415900 + 22573 29817 15311 15601 0.07887545936955576 IGISPDYII 9 Unmodified _IGISPDYII_ 0 0 0 REV__ENST00000498453.1_1_5:130325830-130326118:+|nuORF REV__ENST00000498453.1_1_5:130325830-130326118:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7787780761719 2 495.778951 989.543348 1.0662 0.00052861 0.1074 5.3245E-05 1.1736 0.00058185 495.779108441826 83.589 0.38306 77.413 77.125 77.508 -6.1757 30 19 2 0 0 0 0.03327 1 54872 54872 53.576 2.7205 1 13443000 + 22574 27995 15312 15602 26648 26648 0.04815822354487409 IGKKDKQY 8 Unmodified _IGKKDKQY_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7607421875 2 490.282192 978.549831 0.63839 0.00031299 -1.2181 -0.00059719 -0.57968 -0.0002842 490.28113273933656 51.025 0.2915 51.025 50.875 51.167 0 25 14 3 0 0 0 8.7369 1 28152 28152 9.3474 0 1 6180100 + 22575 17737 15313 15603 26649 26649 0.05969760305845284 IGKRKLLF 8 Unmodified _IGKRKLLF_ 0 0 0 ENST00000432670.6_1_9:95086442-95087580:-|nuORF ENST00000432670.6_1_9:95086442-95087580:-|nuORF ENST00000432670.6_1_9:95086442-95087580:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.2360229492188 1 974.650948 973.643671 1.7631 0.0017184 0.61128 0.00059578 2.3744 0.0023142 974.6516236030969 92.428 0.41025 92.458 92.162 92.573 0.030197 18 15 2 0 0 0 8.7369 1 51416 51416 0.79363 0 1 8728800 22576 13279 15314 15604 26650 26650 0.15579524198801664 IGKVFADRV 9 Unmodified _IGKVFADRV_ 0 0 0 REV__nc|ENSG00000137474|Q13402-5|MYO7A REV__nc|ENSG00000137474|Q13402-5|MYO7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7985229492188 2 502.798009 1003.58147 -0.50682 -0.00025483 1.3577 0.00068263 0.85085 0.0004278 502.79875841831813 37.499 0.28322 37.228 37.067 37.35 -0.27133 16 11 2 0 0 0 0.20428 1 19734 19734 22.736 4.5899 1 1068200 + 22577 20241 15315 15605 26651 26651 0.07981753059800667 IGKYCCLSLY 10 Unmodified _IGKYCCLSLY_ 0 0 0 REV__ENST00000520859.5_1_8:91017819-91018288:+|nuORF REV__ENST00000520859.5_1_8:91017819-91018288:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2860107421875 2 581.785395 1161.55624 0.5197 0.00030235 -1.0886 -0.00063335 -0.56892 -0.00033099 581.7851001446761 64.022 0.60801 63.537 63.341 63.949 -0.48512 107 31 5 0 0 0 0.66569 1 35083 35083 6.7232 1.9672 1 78541000 + 22578 28286 15316 15606 26652 26652 -0.018078058493074423 IGLDNVATY 9 Unmodified _IGLDNVATY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2509460449219 2 483.250557 964.486562 -0.47803 -0.00023101 -0.84248 -0.00040713 -1.3205 -0.00063813 483.2502798650544 55.713 0.32296 55.713 55.487 55.81 0 42 28 2 0 0 0 0.070838 1 30892 30892 39.957 16.809 1 4917400 22579 3631 15317 15607 26653 26653 0.002897747979432097 IGLDNVATY 9 Unmodified _IGLDNVATY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2548522949219 2 483.250557 964.486562 1.5029 0.00072628 1.098 0.00053063 2.601 0.0012569 483.25153748753013 64.41 0.39977 58.234 57.996 58.396 -6.1757 29 21 2 0 0 0 0.03568 1 41639 41639 52.268 17.867 1 11650000 22580 3631 15317 15607 26654 26654 0.002897747979432097 IGLHVFPTF 9 Unmodified _IGLHVFPTF_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7899169921875 2 515.789653 1029.56475 0.23164 0.00011948 -1.3451 -0.00069381 -1.1135 -0.00057433 515.7893997645556 80.356 0.1667 80.413 80.328 80.495 0.057587 10 7 2 0 0 0 0.078417 1 44429 44429 38.151 22.304 1 8608600 22581 6054 15318 15608 26655 26655 0.051152521738458745 IGLHVFPTF 9 Unmodified _IGLHVFPTF_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7903442382812 2 515.789653 1029.56475 1.3138 0.00067765 1.0327 0.00053263 2.3465 0.0012103 515.7894957343522 98.098 0.15395 91.922 91.831 91.985 -6.1757 16 9 2 0 0 0 0.0089973 1 65010 65010 86.121 55.896 1 48913000 22582 6054 15318 15608 26656 26656 0.051152521738458745 IGLLCDLEM 9 Unmodified _IGLLCDLEM_ 0 0 0 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2971801757812 2 503.751021 1005.48749 1.0791 0.00054359 -1.7452 -0.00087913 -0.6661 -0.00033555 503.7485505957012 63.689 0.24165 57.513 57.322 57.564 -6.1757 17 12 2 0 0 0 0.19298 1 41059 41059 8.5933 0 1 3797400 + 22583 23937 15319 15609 26657 26657 -0.015034701489980762 IGMEKFFNI 9 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ IGM(1)EKFFNI IGM(93)EKFFNI 0 0 1 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7845458984375 2 557.78371 1113.55287 0.61149 0.00034108 0.40733 0.0002272 1.0188 0.00056828 557.783999797986 62.976 0.33675 62.954 62.811 63.148 -0.021618 50 16 4 0 0 0 0.0081887 1 34401 34401 93.166 51.071 1 26460000 22584 1866;3502 15320 15610 26658 26658 311 0.0006326736834125768 IGMEKFFNI 9 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ IGM(1)EKFFNI IGM(83)EKFFNI 0 0 1 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7853393554688 2 557.78371 1113.55287 0.83907 0.00046802 1.3068 0.00072891 2.1459 0.0011969 557.7845984293673 68.232 0.56596 62.056 61.854 62.42 -6.1757 42 33 2 0 0 0 0.0093064 1 44576 44576 83.429 41.334 1 26430000 22585 1866;3502 15320 15610 26659 26659 311 0.0006326736834125768 IGMEKFFNI 9 Oxidation (M) _IGM(Oxidation (M))EKFFNI_ 0 0 1 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.78371 1113.55287 0.50299 0.00028056 -0.51781 -0.00028883 -0.014817 -8.2646E-06 557.7838315688489 63.385 0.4613 62.899 62.709 63.171 -0.48617 -0.02779 -0.00074275 NaN 93.166 53 20 4 NaN NaN NaN NaN 0 NaN NaN 0 11841000 22586 1866;3502 15320 15610 311 0.0006326736834125768 IGMEKFFNI 9 Unmodified _IGMEKFFNI_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7855224609375 2 549.786253 1097.55795 0.16725 9.1952E-05 0.43727 0.0002404 0.60452 0.00033235 549.7864569706975 76.474 0.30141 76.522 76.352 76.654 0.047951 21 12 2 0 0 0 0.0093064 1 42167 42167 83.429 41.334 1 6730600 22587 1866;3502 15320 15611 26660 26660 0.01307571230972826 IGMEKFFNI 9 Unmodified _IGMEKFFNI_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1;ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7884521484375 2 549.786253 1097.55795 1.2427 0.00068321 0.81047 0.00044559 2.0532 0.0011288 549.786986450338 95.482 0.60254 89.307 88.949 89.552 -6.1757 76 35 3 0 0 0 0.05483 2 63189 63189;63318 43.772 11.203 1 132490000 22588 1866;3502 15320 15611 26661;26662 26661 0.01307571230972826 IGMMGSHA 8 Unmodified _IGMMGSHA_ 0 0 0 REV__nc|ENSG00000221818|Q9HAK2-2|EBF2 REV__nc|ENSG00000221818|Q9HAK2-2|EBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1790161132812 2 402.180566 802.346579 NaN NaN NaN NaN NaN NaN NaN 20.141 1 20.141 19.641 20.641 0 0 0 0 0.97444 1 10120 10120 0.79363 0 1 + 22589 24358 15321 15612 26663 26663 -0.06250004011769761 IGNEINIFYLI 11 Unmodified _IGNEINIFYLI_ 0 0 0 ENST00000506275.1_1_5:52229685-52248278:+|nuORF;ENST00000504669.5_1_5:52201585-52248278:+|nuORF;ENSG00000213949|ENST00000282588|ITGA1 ENST00000506275.1_1_5:52229685-52248278:+|nuORF ENST00000506275.1_1_5:52229685-52248278:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.86767578125 2 654.863546 1307.71254 0.66513 0.00043557 3.5716 0.0023389 4.2367 0.0027745 654.8658387899559 100.87 0.12679 100.83 100.74 100.87 -0.04216 11 4 4 0 0 0 0.019459 1 56038 56038 57.722 3.8892 1 13550000 22590 10468 15322 15613 26664 26664 0.07099098917205993 IGNEWPWIYF 10 Unmodified _IGNEWPWIYF_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2164306640625 3 442.21688 1323.62881 -0.25378 -0.00011223 -0.23268 -0.0001029 -0.48646 -0.00021512 442.21661227261416 25.786 0.18749 25.786 25.674 25.862 0 11 8 2 0 0 0 0.71042 1 13266 13266 1.7423 1.0446 1 601450 22591 1322 15323 15614 26665 26665 -0.020060124598558104 IGNLETIISF 10 Unmodified _IGNLETIISF_ 0 0 0 ENSG00000188676|ENST00000502986|IDO2 ENSG00000188676|ENST00000502986|IDO2 ENSG00000188676|ENST00000502986|IDO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.810302734375 2 553.808239 1105.60193 0.47408 0.00026255 2.6173 0.0014495 3.0914 0.001712 553.8098652971613 63.646 0.21241 63.646 63.52 63.732 0 13 8 2 0 0 0 0.5905 1 35523 35523 11.64 0 1 812760 22592 9684 15324 15615 26666 26666 0.05334878928965736 IGNWGVNI 8 Unmodified _IGNWGVNI_ 0 0 0 REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7351684570312 2 436.734877 871.455202 0.77033 0.00033643 1.5812 0.00069055 2.3515 0.001027 436.73536788740876 43.749 0.51167 38.984 38.709 39.22 -4.7648 72 31 3 0 0 0 0.35156 1 26475 26475 49.669 13.625 1 18109000 + 22593 24447 15325 15616 26667 26667 0.014332465545066952 IGNYLYWYQQK 11 Unmodified _IGNYLYWYQQK_ 0 0 0 nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41 nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41 nc|ENSG00000211626|A0A0C4DH26|IGKV6D-41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.9162292480469 3 492.58211 1474.7245 0.69425 0.00034198 -0.38518 -0.00018973 0.30907 0.00015224 492.58199102868997 18.384 0.28435 15.762 15.638 15.923 -2.6215 58 25 3 0 0 0 0.72952 1 9649 9649 0.50596 0.09769 1 5689900 22594 16519 15326 15617 26668 26668 0.00612715660372487 IGPALQGNNF 10 Unmodified _IGPALQGNNF_ 0 0 0 REV__ENSG00000198963|ENST00000376896|RORB REV__ENSG00000198963|ENST00000376896|RORB MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7680053710938 2 515.769448 1029.52434 0.61385 0.00031661 -2.6795 -0.001382 -2.0657 -0.0010654 515.7668957107815 80.635 0.31477 74.459 74.236 74.551 -6.1757 21 16 2 0 0 0 0.37389 1 52896 52896 23.148 2.2772 1 10202000 + 22595 24110 15327 15618 26669 26669 0.010762857834151873 IGPHHHQPF 9 Unmodified _IGPHHHQPF_ 0 0 0 REV__nc|ENSG00000147862|O00712-6|NFIB REV__nc|ENSG00000147862|O00712-6|NFIB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.5379638671875 3 357.182392 1068.52535 1.739 0.00062114 -0.78273 -0.00027958 0.95626 0.00034156 357.18202303947163 19.655 0.2345 16.999 16.898 17.133 -2.6564 22 15 2 0 0 0 0.21242 1 10430 10430 0.26902 0.062163 1 2917100 + 22596 20917 15328 15619 26670 26670 -0.006174550570221982 IGPLDPKGL 9 Unmodified _IGPLDPKGL_ 0 0 0 nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3;nc|ENSG00000100012|Q9UDX4-3|SEC14L3 nc|ENSG00000100012|Q9UDX4-2|SEC14L3 nc|ENSG00000100012|Q9UDX4-2|SEC14L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2736511230469 2 455.273835 908.533118 0.41111 0.00018717 0.94889 0.00043201 1.36 0.00061917 455.27424725290774 71.604 0.31462 71.128 70.927 71.242 -0.47609 20 12 2 0 0 0 0.46577 1 39190 39190 9.3474 2.0582 1 528520 22597 1736 15329 15620 26671 26671 0.07519259419893842 IGPNGQKCSCK 11 Unmodified _IGPNGQKCSCK_ 0 0 0 ENST00000297324.4_1_8:13424487-13424556:+|nuORF ENST00000297324.4_1_8:13424487-13424556:+|nuORF ENST00000297324.4_1_8:13424487-13424556:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.85302734375 3 378.851326 1133.53215 NaN NaN NaN NaN NaN NaN NaN 17.055 1 14.468 13.968 14.968 -2.5866 0 0 0 0.93984 1 8885 8885 2.6312 0 1 22598 11523 15330 15621 26672 26672 -0.029276462829784577 IGPNLLYIL 9 Unmodified _IGPNLLYIL_ 0 0 0 ENST00000370651.5_1_6:64290081-64290159:+|nuORF ENST00000370651.5_1_6:64290081-64290159:+|nuORF ENST00000370651.5_1_6:64290081-64290159:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7929382324219 2 508.312961 1014.61137 0.68174 0.00034654 0.34406 0.00017489 1.0258 0.00052143 508.3130484425163 75.561 0.64113 69.385 69.194 69.836 -6.1757 44 34 2 0 0 0 0.11012 1 49563 49563 36.044 3.9272 1 8223800 22599 12339 15331 15622 26673 26673 0.10464692005132292 IGPRLMCSSF 10 Unmodified _IGPRLMCSSF_ 0 0 0 REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG REV__nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.27880859375 2 555.775362 1109.53617 1.1458 0.0006368 -1.3624 -0.00075717 -0.21658 -0.00012037 555.7750356748963 50.633 0.84397 45.088 44.755 45.599 -5.5446 127 52 4 0 0 0 0.63399 1 31922 31922 9.3831 2.0939 1 486270000 + 22600 24647 15332 15623 26674 26674 -0.014215567892506442 IGQLSQLQL 9 Unmodified _IGQLSQLQL_ 0 0 0 REV__ENSG00000103507|ENST00000219794|BCKDK REV__ENSG00000103507|ENST00000219794|BCKDK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2954711914062 2 500.295299 998.576045 0.98958 0.00049508 -0.10307 -5.1563E-05 0.88652 0.00044352 500.295329567811 46.271 0.20512 46.271 46.164 46.369 0 17 9 2 0 0 0 0.03568 1 25276 25276 52.268 2.3353 1 2546000 + 22601 18310 15333 15624 26675 26675 0.07670029477333173 IGQQEYFLI 9 Unmodified _IGQQEYFLI_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7952880859375 2 555.795132 1109.57571 1.1259 0.00062574 0.8837 0.00049115 2.0096 0.0011169 555.7961634973108 80.289 0.24342 79.8 79.689 79.932 -0.48933 15 9 2 0 0 0 0.53666 1 43966 43966 5.2307 0 1 652630 + 22602 19656;22513 15334 15625 26676 26676 0.0253060975749122 IGQQEYFLI 9 Unmodified _IGQQEYFLI_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6;REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.795132 1109.57571 1.1259 0.00062574 0.8837 0.00049115 2.0096 0.0011169 555.7961634973108 80.289 0.24342 79.8 79.689 79.932 -0.48933 0 0 NaN 5.2307 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 652630 + 22603 19656;22513 15334 15625 0.0253060975749122 IGRFFFYV 8 Unmodified _IGRFFFYV_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5271301269531 3 350.192006 1047.55419 -0.57826 -0.0002025 2.6944 0.00094356 2.1161 0.00074105 350.19315305969025 16.409 0.11597 16.409 16.381 16.497 0 40 26 2 0 0 0 0.80722 1 8045 8045 1.4819 0.15237 1 780970 + 22604 29003 15335 15626 26677 26677 0.032312695194150365 IGRFFFYV 8 Unmodified _IGRFFFYV_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 350.192006 1047.55419 -0.57826 -0.0002025 2.6944 0.00094356 2.1161 0.00074105 350.19315305969025 16.409 0.11597 16.409 16.381 16.497 0 0 0 NaN 1.4819 40 26 2 NaN NaN NaN NaN 0 NaN NaN 0 780970 + 22605 29003 15335 15626 0.032312695194150365 IGRGPLLGI 9 Unmodified _IGRGPLLGI_ 0 0 0 ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2898864746094 2 448.28982 894.565087 0.85534 0.00038344 -0.64055 -0.00028715 0.21478 9.6285E-05 448.28950763310104 70.14 0.21773 70.175 70.094 70.312 0.035507 18 10 2 0 0 0 0.2143 1 38656 38656 21.747 0 1 1924100 22606 7893 15336 15627 26678 26678 0.1135867189370856 IGRLQLRTL 9 Unmodified _IGRLQLRTL_ 0 0 0 nc|ENSG00000133135|Q8TEB7-2|RNF128;ENSG00000133135|ENST00000255499|RNF128 nc|ENSG00000133135|Q8TEB7-2|RNF128 nc|ENSG00000133135|Q8TEB7-2|RNF128 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3466796875 2 535.345658 1068.67676 0.41324 0.00022123 0.86216 0.00046156 1.2754 0.00068278 535.346067448045 48.177 0.17664 48.138 48.047 48.224 -0.038647 15 8 2 0 0 0 0.43515 1 25992 25992 10.824 7.2274 1 1604600 22607 4495 15337 15628 26679 26679 0.14517106250832512 IGRSTKFQLL 10 Unmodified _IGRSTKFQLL_ 0 0 0 REV__ENST00000475700.1_1_1:112305262-112305454:+|nuORF REV__ENST00000475700.1_1_1:112305262-112305454:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.900390625 3 388.236274 1161.68699 0.76828 0.00029828 -0.55659 -0.00021609 0.2117 8.2188E-05 388.2362066599809 27.857 0.64082 24.709 24.343 24.983 -3.1482 90 33 5 0 0 0 0.67046 1 15307 15307 6.1918 0 1 169910000 + 22608 27581 15338 15629 26680 26680 0.11261669185432766 IGRSVEQLAV 10 Unmodified _IGRSVEQLAV_ 0 0 0 REV__ENST00000264246.7_1_3:119244445-119244583:-|nuORF REV__ENST00000264246.7_1_3:119244445-119244583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8773498535156 3 357.876746 1070.60841 -0.33591 -0.00012021 0.94611 0.00033859 0.6102 0.00021838 357.877263381339 23.945 0.20484 23.945 23.811 24.016 0 25 9 4 0 0 0 0.48505 1 12212 12212 10.899 0.099449 1 2523400 + 22609 25066 15339 15630 26681 26681 0.07592816880332975 IGRYDQATDTI 11 Unmodified _IGRYDQATDTI_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.8115844726562 2 626.812042 1251.60953 -0.15837 -9.9271E-05 1.5586 0.00097694 1.4002 0.00087766 626.812744599813 23.21 0.16075 23.21 23.126 23.287 0 18 7 3 0 0 0 0.57006 1 11820 11820 7.609 4.0125 1 622190 22610 8159 15340 15631 26682 26682 -0.006210135414448814 IGSAQVETI 9 Unmodified _IGSAQVETI_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2502746582031 2 459.250557 916.486562 0.64221 0.00029493 -0.52344 -0.00024039 0.11877 5.4543E-05 459.25016499104277 50.551 0.18623 50.551 50.456 50.643 0 14 8 2 0 0 0 0.37804 1 27890 27890 13.508 0 1 1937600 + 22611 29733 15341 15632 26683 26683 0.024977747979505693 IGSEKLQPE 9 Unmodified _IGSEKLQPE_ 0 0 0 REV__ENST00000475187.5_1_22:29940492-29945087:-|nuORF REV__ENST00000475187.5_1_22:29940492-29945087:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8048706054688 2 500.769114 999.523675 -0.41499 -0.00020782 -1.4098 -0.00070601 -1.8248 -0.00091382 500.76885494743055 51.466 0.23991 51.053 51.009 51.248 -0.41351 20 12 2 0 0 0 0.19496 1 27785 27785 13.906 0 1 4761900 + 22612 27570 15342 15633 26684 26684 0.023894463437045488 IGSGGPRAPL 10 Unmodified _IGSGGPRAPL_ 0 0 0 REV__ENST00000432729.5_1_3:178785539-178789470:-|nuORF REV__ENST00000432729.5_1_3:178785539-178789470:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.7256164550781 2 462.766709 923.518865 0.76144 0.00035237 -3.5757 -0.0016547 -2.8143 -0.0013023 462.7664825342517 31.932 0.27294 28.236 28.105 28.378 -3.6958 21 14 2 0 0 0 0.21571 1 18117 18117 9.3831 0 1 7857600 + 22613 26991 15343 15634 26685 26685 0.054046069916125816 IGSPVDLTY 9 Unmodified _IGSPVDLTY_ 0 0 0 nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4984130859375 1 964.498589 963.491313 0.40458 0.00039022 -0.58466 -0.00056391 -0.18008 -0.00017368 964.498010358558 59.654 0.20335 59.654 59.532 59.736 0 13 8 2 0 0 0 0.070838 1 33224 33224 39.957 14.558 1 1124800 22614 538 15344 15635 26686 26686 0.00810658940713438 IGSRWQRI 8 Unmodified _IGSRWQRI_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF;ENST00000531368.1_1_17:42286674-42287095:-|nuORF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.294189453125 2 508.293425 1014.5723 0.39357 0.00020005 1.1193 0.00056895 1.5129 0.000769 508.2939562149864 73.59 0.32011 73.114 72.932 73.252 -0.47588 30 13 3 0 0 0 0.74163 1 40341 40341 13.508 0.97634 1 3064700 22615 2558 15345 15636 26687 26687 0.06559404494123555 IGSTILTI 8 Unmodified _IGSTILTI_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.255126953125 2 409.255111 816.49567 -0.01479 -6.0528E-06 0.3392 0.00013882 0.32441 0.00013277 409.25532705994317 62.835 0.32854 62.835 62.679 63.008 0 27 13 3 0 0 0 0.65867 1 35124 35124 20.871 1.4322 1 3010100 22616 1262 15346 15637 26688 26688 0.08008168154276518 IGSTILTI 8 Unmodified _IGSTILTI_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 817.5045776367188 1 817.502946 816.49567 -0.076576 -6.2601E-05 1.1197 0.00091538 1.0432 0.00085278 817.5037719244343 63.247 0.28514 62.761 62.642 62.927 -0.48617 20 12 2 0 0 0 0.15234 1 34480 34480 86.121 15.406 1 1621900 22617 1262 15346 15637 26689 26689 0.08008168154276518 IGSTILTI 8 Unmodified _IGSTILTI_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2555847167969 2 409.255111 816.49567 1.0146 0.00041525 -0.22126 -9.055E-05 0.79338 0.0003247 409.25505081113096 70.209 0.43452 64.033 63.828 64.262 -6.1757 43 24 2 0 0 0 0.17881 1 45797 45797 78.445 0 1 61828000 22618 1262 15346 15637 26690 26690 0.08008168154276518 IGSYTWGI 8 Unmodified _IGSYTWGI_ 0 0 0 UPK1A|p.D227G|1|0.09|ENSG00000105668|chr19:35677843-35677843|A/G|missense_variant UPK1A|p.D227G|1|0.09|ENSG00000105668|chr19:35677843-35677843|A/G|missense_variant UPK1A|p.D227G|1|0.09|ENSG00000105668|chr19:35677843-35677843|A/G|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7766723632812 2 448.729261 895.443968 0.68242 0.00030622 -0.11878 -5.3301E-05 0.56364 0.00025292 448.72920643887664 62.158 0.13602 62.125 62.004 62.14 -0.032787 9 6 2 0 0 0 8.7369 1 33911 33911 11.114 0 1 1249200 22619 30206 15347 15638 26691 26691 -0.007935755396374589 IGTDPRTIL 9 Unmodified _IGTDPRTIL_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2881469726562 2 493.287474 984.560395 0.72837 0.00035929 0.23931 0.00011805 0.96768 0.00047734 493.28740487520673 39.576 0.40709 35.125 34.946 35.353 -4.4509 61 25 3 0 0 0 0.094149 1 23635 23635 34.402 0.95682 1 29779000 22620 16078 15348 15639 26692 26692 0.06749742960300864 IGTFSDWII 9 Unmodified _IGTFSDWII_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2764892578125 2 526.276575 1050.5386 0.27871 0.00014668 0.34868 0.0001835 0.62739 0.00033018 526.2766848996059 96.613 0.29878 96.308 96.099 96.397 -0.30472 22 17 2 0 0 0 0.47846 1 52771 52771 13.508 4.9146 1 1038900 + 22621 21413 15349 15640 26693 26693 0.015349382117165078 IGTFSDWII 9 Unmodified _IGTFSDWII_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.276575 1050.5386 0.27871 0.00014668 0.34868 0.0001835 0.62739 0.00033018 526.2766848996059 96.613 0.29878 96.308 96.099 96.397 -0.30472 0 0 NaN 13.508 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1038900 + 22622 21413 15349 15640 0.015349382117165078 IGTGDLKILT 10 Unmodified _IGTGDLKILT_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8114624023438 2 515.810782 1029.60701 -0.18942 -9.7705E-05 0.87062 0.00044908 0.6812 0.00035137 515.8111965540409 61.428 0.19176 60.939 60.818 61.009 -0.48932 10 8 2 0 0 0 0.35903 1 33474 33474 24.021 4.7636 1 1155200 22623 3136 15350 15641 26694 26694 0.09339182791563871 IGTHVTFVS 9 Unmodified _IGTHVTFVS_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7606811523438 2 480.761092 959.507631 -0.34994 -0.00016824 -0.76744 -0.00036896 -1.1174 -0.0005372 480.7608576283236 41.129 0.19611 41.129 41.065 41.261 0 16 9 2 0 0 0 0.070838 1 22177 22177 39.957 11.47 1 2590800 22624 9772 15351 15642 26695 26695 0.026257848974864828 IGTLEDEDTI 10 Unmodified _IGTLEDEDTI_ 0 0 0 REV__ENSG00000165138|ENST00000353234|ANKS6 REV__ENSG00000165138|ENST00000353234|ANKS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1812744140625 3 369.18016 1104.51865 1.7577 0.00064891 1.386 0.0005117 3.1437 0.0011606 369.1806526561405 20.667 0.40551 17.974 17.762 18.167 -2.693 87 25 4 0 0 0 0.5905 1 10998 10998 6.6304 0.43853 1 15296000 + 22625 21986 15352 15643 26696 26696 -0.02942902309564488 IGTLTMSL 8 Oxidation (M) _IGTLTM(Oxidation (M))SL_ IGTLTM(1)SL IGTLTM(78)SL 0 0 1 REV__ENSG00000092096|ENST00000354772|SLC22A17 REV__ENSG00000092096|ENST00000354772|SLC22A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7321472167969 2 426.230779 850.447005 -0.31327 -0.00013353 0.92107 0.00039259 0.6078 0.00025906 426.23120647492726 44.64 0.29359 44.64 44.437 44.73 0 24 15 2 0 0 0 0.17881 1 24258 24258 78.445 18.65 1 13943000 + 22626 17902 15353 15644 26697 26697 1831 0.01579931522883271 IGVDEFSTL 9 Unmodified _IGVDEFSTL_ 0 0 0 ENSG00000100362|ENST00000417718|PVALB ENSG00000100362|ENST00000417718|PVALB ENSG00000100362|ENST00000417718|PVALB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7506408691406 2 490.75039 979.486227 NaN NaN NaN NaN NaN NaN NaN 56.015 1 56.015 55.515 56.515 0 0 0 0 0.43505 1 31143 31143 18.135 1.1927 1 22627 1807 15354 15645 26698 26698 -0.004336449219067617 IGVEGGNATR 10 Unmodified _IGVEGGNATR_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2574768066406 2 487.256705 972.498858 -0.41758 -0.00020347 0.67241 0.00032764 0.25483 0.00012417 487.25701977666847 16.864 0.38242 16.865 16.689 17.071 0.0010548 255 115 3 0 0 0 0.65773 1 8259 8259 7.609 0.31972 1 2453700 22628 10153 15355 15646 26699 26699 0.011508112609817545 IGVEHVVVY 9 Unmodified _IGVEHVVVY_ 0 0 0 ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7841186523438 2 507.784567 1013.55458 0.028676 1.4561E-05 -0.4214 -0.00021398 -0.39272 -0.00019942 507.7842877086389 48.632 0.20907 48.261 48.102 48.311 -0.37172 17 10 2 0 0 0 0.06187 1 26105 26105 42.095 15.753 1 6373000 22629 8787 15356 15647 26700 26700 0.04834644448612835 IGVLDELPV 9 Unmodified _IGVLDELPV_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7796325683594 2 477.778951 953.543348 1.1374 0.00054341 -0.56876 -0.00027174 0.56861 0.00027167 477.77868560708947 101.24 0.11633 95.066 94.99 95.107 -6.1757 13 7 2 0 0 0 0.095405 1 67920 67920 34.102 10.954 1 52595000 + 22630 23805 15357 15648 26701 26701 0.06471822354467349 IGVLSIGQHI 10 Unmodified _IGVLSIGQHI_ 0 0 0 ENST00000451422.1_1_3:15766016-15778544:-|nuORF ENST00000451422.1_1_3:15766016-15778544:-|nuORF ENST00000451422.1_1_3:15766016-15778544:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2740478515625 2 518.811116 1035.60768 0.32778 0.00017006 -0.34692 -0.00017998 -0.019134 -9.927E-06 518.8108596975873 58.729 0.22601 58.729 58.583 58.809 0 15 9 2 0 0 0 0.22489 1 32648 32648 18.146 2.3781 1 1019000 22631 13520 15358 15649 26702 26702 0.09130022231261137 IGVMEAVM 8 Unmodified _IGVMEAVM_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS AL20221201_MKP_PDAC_01 4 425.2135009765625 2 425.214075 848.413596 NaN NaN NaN NaN NaN NaN NaN 23.357 1 20.579 20.079 21.079 -2.7784 0 0 0 0.93066 1 12639 12639 14.582 0 1 + 22632 20277 15359 15650 26703 26703 -0.016673935206654278 IGVMSLVKKKV 11 Unmodified _IGVMSLVKKKV_ 0 0 0 nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3886108398438 2 601.388677 1200.7628 0.89142 0.00053609 -2.2571 -0.0013574 -1.3657 -0.0008213 601.3874692352387 105.6 0.10094 99.426 99.375 99.476 -6.1757 11 6 2 0 0 0 0.73115 1 70754 70754 1.3295 0.92882 1 3515700 22633 7938 15360 15651 26704 26704 0.17044930041333828 IGVPVNRRPL 10 Unmodified _IGVPVNRRPL_ 0 0 0 REV__nc|ENSG00000088280|Q8TDY4-3|ASAP3 REV__nc|ENSG00000088280|Q8TDY4-3|ASAP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1796264648438 3 374.236497 1119.68766 -0.25762 -9.6413E-05 0.18852 7.0552E-05 -0.069102 -2.5861E-05 374.23668681736456 31.536 0.27504 31.567 31.457 31.732 0.030104 18 12 2 0 0 0 0.23489 1 16547 16547 9.544 1.3884 1 2148900 + 22634 17800 15361 15652 26705 26705 0.13260508625126022 IGVSQFTLTP 10 Unmodified _IGVSQFTLTP_ 0 0 0 REV__nc|ENSG00000248099|P51460-2|INSL3 REV__nc|ENSG00000248099|P51460-2|INSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7971801757812 2 531.795132 1061.57571 0.94672 0.00050346 4.1032 0.0021821 5.0499 0.0026855 531.7973293827245 54.248 0.28733 54.248 54.111 54.398 0 24 12 2 0 0 0 0.04925 1 30112 30112 58.679 8.7458 1 3022400 + 22635 29972 15362 15653 26706 26706 0.04738609757487211 IGVTGDLTY 9 Unmodified _IGVTGDLTY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7454833984375 2 469.745108 937.475663 0.62544 0.0002938 -0.24495 -0.00011506 0.38049 0.00017873 469.7449227041805 59.586 0.33097 59.586 59.423 59.754 0 33 14 3 0 0 0 0.045537 1 33173 33173 46.921 10.877 1 8065300 + 22636 24338 15363 15654 26707 26707 0.004423724236517046 IGVTGDLTY 9 Unmodified _IGVTGDLTY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 938.4827880859375 1 938.482939 937.475663 0.02836 2.6615E-05 0.57473 0.00053938 0.60309 0.00056599 938.483623526366 60.202 0.17905 59.711 59.607 59.786 -0.49079 12 8 2 0 0 0 0.052168 1 32758 32758 44.407 2.3125 1 2508600 + 22637 24338 15363 15654 26708 26708 0.004423724236517046 IGVTGDLTY 9 Unmodified _IGVTGDLTY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7442932128906 2 469.745108 937.475663 0.52465 0.00024645 -0.6829 -0.00032079 -0.15825 -7.4336E-05 469.7451615790212 67.873 0.44456 61.697 61.48 61.924 -6.1757 44 25 2 0 0 0 0.087258 1 44189 44189 36.044 5.8194 1 35830000 + 22638 24338 15363 15654 26709 26709 0.004423724236517046 IGVTGDLTY 9 Unmodified _IGVTGDLTY_ 0 0 0 REV__ENSG00000215251|ENST00000380266|FASTKD5 REV__ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.745108 937.475663 0.62544 0.0002938 -0.24495 -0.00011506 0.38049 0.00017873 469.7449227041805 59.586 0.33097 59.586 59.423 59.754 0 -0.044351 -2.79E-05 NaN 46.921 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 8065300 + 22639 24338 15363 15654 0.004423724236517046 IGWGRRVT 8 Unmodified _IGWGRRVT_ 0 0 0 ENST00000221419.9_1_19:39340639-39340798:-|nuORF ENST00000221419.9_1_19:39340639-39340798:-|nuORF ENST00000221419.9_1_19:39340639-39340798:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.77392578125 2 472.774868 943.535184 NaN NaN NaN NaN NaN NaN NaN 0.10762 1 0.085554 -0.41445 0.58555 -0.022065 0 0 0 0.97444 1 57 57 0.79363 0 1 22640 11033 15364 15655 26710 26710 0.06115732948353525 IGWSSVFYIYG 11 Unmodified _IGWSSVFYIYG_ 0 0 0 ENSG00000179520|ENST00000323346|SLC17A8;nc|ENSG00000179520|Q8NDX2-2|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8212280273438 2 646.321514 1290.62847 0.50746 0.00032798 -1.5693 -0.0010142 -1.0618 -0.00068626 646.8219097357486 48.172 0.34158 42.938 42.728 43.069 -5.2339 40 20 3 0 0 0 0.44389 1 29935 29935 19.257 4.0085 1 14744000 22641 8839 15365 15656 26711 26711 -0.005214321797211596 IGYCFICLYF 10 Unmodified _IGYCFICLYF_ 0 0 0 REV__nc|ENSG00000139624|Q8N5B7-2|CERS5 REV__nc|ENSG00000139624|Q8N5B7-2|CERS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.8643798828125 3 414.529301 1240.56607 0.26792 0.00011106 0.98787 0.0004095 1.2558 0.00052056 414.8641915899356 52.899 0.19917 52.835 52.761 52.961 -0.063423 22 9 3 0 0 0 0.70951 1 28689 28689 0.77653 0 1 2603600 + 22642 20420 15366 15657 26712 26712 -0.04458617843920365 IHADIPEFL 9 Unmodified _IHADIPEFL_ 0 0 0 nc|ENSG00000167077|Q5TIA1-6|MEI1;nc|ENSG00000167077|Q5TIA1-4|MEI1;ENSG00000167077|ENST00000401548|MEI1 nc|ENSG00000167077|Q5TIA1-6|MEI1 nc|ENSG00000167077|Q5TIA1-6|MEI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.26318359375 2 527.782025 1053.5495 0.88051 0.00046472 1.1853 0.00062558 2.0658 0.0010903 527.7842062014455 79.955 0.15269 79.465 79.354 79.507 -0.48932 7 5 2 0 0 0 0.19298 1 43741 43741 13.508 2.3934 1 354540 22643 7566 15367 15658 26713 26713 0.024863405860060084 IHADPKLLL 9 Unmodified _IHADPKLLL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7950744628906 2 510.316035 1018.61752 1.0662 0.00054409 0.11085 5.6567E-05 1.177 0.00060066 510.3162014650823 94.272 0.6217 88.097 87.823 88.445 -6.1757 109 35 4 0 0 0 0.17718 1 62254 62254 20.454 3.5113 1 66626000 22644 16480 15368 15659 26714 26714 0.10895210236662933 IHAHQEKY 8 Unmodified _IHAHQEKY_ 0 0 0 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 ENSG00000114656|ENST00000645291|CFAP92 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.7604370117188 2 513.261791 1024.50903 0.52168 0.00026776 1.2478 0.00064047 1.7695 0.00090823 513.2629571800527 44.436 0.17052 39.584 39.461 39.632 -4.852 15 11 2 0 0 0 8.7369 1 27095 27095 19.439 0 1 10527000 22645 3055 15369 15660 26715 26715 -0.0022458101375377737 IHALEAGI 8 Unmodified _IHALEAGI_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2368469238281 2 412.237253 822.459953 -0.016938 -6.9824E-06 0.54796 0.00022589 0.53102 0.00021891 412.2376120647336 39.807 0.21178 39.807 39.74 39.952 0 16 10 2 0 0 0 0.65867 1 21390 21390 20.871 1.4322 1 866290 22646 2180 15370 15661 26716 26716 0.04162130697284283 IHCAQTGWF 9 Unmodified _IHCAQTGWF_ 0 0 0 REV__ENST00000484656.5_1_1:33549518-33583718:+|nuORF REV__ENST00000484656.5_1_1:33549518-33583718:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.462890625 3 354.832372 1061.47529 NaN NaN NaN NaN NaN NaN NaN 91.645 1 91.164 90.664 91.664 -0.48092 0 0 0 0.84369 1 50093 50093 1.1933 0.12188 1 + 22647 20595 15371 15662 26717 26717 -0.052993257771731805 IHCVVWRLL 9 Unmodified _IHCVVWRLL_ 0 0 0 REV__ENSG00000146267|ENST00000389677|FAXC REV__ENSG00000146267|ENST00000389677|FAXC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7842407226562 2 569.831329 1137.6481 0.98172 0.00055941 -3.0374 -0.0017308 -2.0557 -0.0011714 569.8305859140553 49.646 0.15421 49.597 49.549 49.703 -0.048824 17 7 3 0 0 0 0.20727 1 26836 26836 7.9102 0.62092 1 2573400 + 22648 20822 15372 15663 26718 26718 0.08478665350048686 IHCVVWRLL 9 Unmodified _IHCVVWRLL_ 0 0 0 REV__ENSG00000146267|ENST00000389677|FAXC REV__ENSG00000146267|ENST00000389677|FAXC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 569.831329 1137.6481 0.98473 0.00056113 -2.0579 -0.0011726 -1.0731 -0.00061151 569.8299522429804 50.01 0.22173 49.618 49.51 49.732 -0.3923 0.010301 6.4193E-05 NaN 7.9102 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3481400 + 22649 20822 15372 15663 0.08478665350048686 IHCYLYYS 8 Unmodified _IHCYLYYS_ 0 0 0 ENST00000231368.9_1_5:96366436-96366532:+|nuORF ENST00000231368.9_1_5:96366436-96366532:+|nuORF ENST00000231368.9_1_5:96366436-96366532:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.4973754882812 3 354.496877 1060.4688 1.3254 0.00046984 -0.96082 -0.00034061 0.36454 0.00012923 354.49644500185104 46.889 0.45695 41.808 41.768 42.225 -5.0805 53 44 2 0 0 0 0.80975 1 29076 29076 0.45834 0 1 21146000 22650 11072 15373 15664 26719 26719 -0.059012637285604796 IHDRYHRV 8 Unmodified _IHDRYHRV_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8664855957031 3 365.865063 1094.57336 NaN NaN NaN NaN NaN NaN NaN 5.1317 1 5.0542 4.5542 5.5542 -0.07749 0 0 0 0.97444 1 2533 2533 0.40072 0.16487 1 + 22651 16953 15374 15665 26720 26720 0.02985618863021955 IHEACSSIH 9 Unmodified _IHEACSSIH_ 0 0 0 ENSG00000123130|ENST00000379303|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7909545898438 2 498.732009 995.449465 0.39391 0.00019646 0.71589 0.00035704 1.1098 0.00055349 498.7323554935882 71.473 0.23511 70.995 70.884 71.12 -0.47735 12 9 2 0 0 0 0.19613 1 39172 39172 12.532 2.3482 1 484740 22652 3682 15375 15666 26721 26721 -0.04844220019447221 IHEEHLKY 8 Unmodified _IHEEHLKY_ 0 0 0 ENST00000322177.5_1_15:75247948-75248191:-|nuORF ENST00000322177.5_1_15:75247948-75248191:-|nuORF ENST00000322177.5_1_15:75247948-75248191:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7132568359375 2 534.777274 1067.53999 0.25564 0.00013671 -2.7643 -0.0014783 -2.5087 -0.0013416 534.7762028985062 64.212 0.20626 64.212 64.071 64.277 0 13 8 2 0 0 0 8.7369 1 35749 35749 5.2307 0 1 576940 22653 11783 15376 15667 26722 26722 0.008925723004722386 IHELCDPC 8 Unmodified _IHELCDPC_ 0 0 0 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 464.7498779296875 2 465.196413 928.378273 0.48307 0.00022472 3.1682 0.0014739 3.6513 0.0016986 465.1985354906429 27.031 0.19012 23.995 23.932 24.122 -3.0365 11 9 2 0 0 0 8.7369 1 15000 15000 10.183 3.8293 1 4656300 + 22654 29722 15377 15668 26723 26723 -0.08878056048479266 IHELCDPCAE 10 Unmodified _IHELCDPCAE_ 0 0 0 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.85400390625 3 377.159937 1128.45798 0.47054 0.00017747 2.1698 0.00081837 2.6404 0.00099584 377.16189652144715 49.638 0.25758 49.638 49.536 49.793 0 23 11 3 0 0 0 0.23566 1 27369 27369 3.8763 0.28927 1 1844600 + 22655 29722 15378 15669 26724 26724 -0.10111034165151978 IHENETDSWT 10 Unmodified _IHENETDSWT_ 0 0 0 nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000472637.5_1_3:112724385-112732818:-|nuORF;ENST00000474311.1_1_3:112724385-112727343:-|nuORF nc|ENSG00000163608|Q6NW34-2|NEPRO nc|ENSG00000163608|Q6NW34-2|NEPRO MULTI-SECPEP AL20221201_MKP_PDAC_01 4 615.80419921875 2 616.264924 1230.5153 -0.0077901 -4.8007E-06 0.80537 0.00049632 0.79758 0.00049152 616.2648784814704 65.585 0.14152 59.409 59.304 59.445 -6.1757 12 7 2 0 0 0 0.22811 1 42592 42592 14.838 0 1 14326000 22656 7027 15379 15670 26725 26725 -0.09074152363587018 IHENYNGTTY 10 Unmodified _IHENYNGTTY_ 0 0 0 CON__Q32PI4 CON__Q32PI4 CON__Q32PI4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2672119140625 2 606.27001 1210.52547 NaN NaN NaN NaN NaN NaN NaN 15.436 1 15.436 14.936 15.936 0 0 0 0 0.99008 1 7435 7435 0.35063 0 1 + 22657 198 15380 15671 26726 26726 -0.07137544638339932 IHEPSNIDEI 10 Unmodified _IHEPSNIDEI_ 0 0 0 REV__ENSG00000136928|ENST00000259455|GABBR2 REV__ENSG00000136928|ENST00000259455|GABBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7897338867188 2 583.788035 1165.56152 0.38158 0.00022276 2.4795 0.0014475 2.8611 0.0016703 583.7894912917865 68.41 0.41331 67.93 67.683 68.096 -0.48071 30 18 3 0 0 0 0.52888 1 37460 37460 14.838 2.3067 1 1764700 + 22658 20199 15381 15672 26727 26727 -0.014640874614769928 IHEQYAEF 8 Unmodified _IHEQYAEF_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.3253173828125 2 518.740357 1035.46616 0.51419 0.00026673 0.93522 0.00048514 1.4494 0.00075187 518.7409938049183 40.372 0.36848 35.843 35.695 36.064 -4.5294 37 23 2 0 0 0 8.7369 1 24032 24032 21.747 8.2388 1 14801000 + 22659 19778 15382 15673 26728 26728 -0.05015395861846628 IHERELFEL 9 Unmodified _IHERELFEL_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.880859375 3 395.880267 1184.61897 -0.2263 -8.9587E-05 0.94242 0.00037308 0.71612 0.0002835 395.8804141156157 33.25 0.1844 33.09 32.959 33.144 -0.15918 13 7 2 0 0 0 0.43463 1 17316 17316 7.1017 2.5729 1 1818600 + 22660 19619 15383 15674 26729 26729 0.03404799534769154 IHEVLAPGCL 10 Carbamidomethyl (C) _IHEVLAPGC(Carbamidomethyl (C))L_ IHEVLAPGC(1)L IHEVLAPGC(46)L 0 1 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7957153320312 2 554.794609 1107.57467 0.72057 0.00039977 -0.44476 -0.00024675 0.27581 0.00015302 554.7949251365693 56.957 0.28881 50.98 50.811 51.1 -5.9769 29 17 2 0 0 0 0.1028 1 36375 36375 46.021 24.274 1 21966000 22661 1386 15384 15675 26730 26730 130 0.025180721169135722 IHFDSNHHFY 10 Unmodified _IHFDSNHHFY_ 0 0 0 REV__ENSG00000162747|ENST00000650385|FCGR3B REV__ENSG00000162747|ENST00000650385|FCGR3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.5337829589844 3 439.53175 1315.57342 NaN NaN NaN NaN NaN NaN NaN 40.452 1 40.457 39.957 40.957 0.0050545 0 0 0 0.98914 1 21571 21571 0.77653 0 1 + 22662 21686 15385 15676 26731 26731 -0.07174425927610173 IHFFGCRTPL 10 Unmodified _IHFFGCRTPL_ 0 0 0 REV__C2CD5|p.C465F|1|0.09|ENSG00000111731|chr12:22484853-22484853|C/A|missense_variant REV__C2CD5|p.C465F|1|0.09|ENSG00000111731|chr12:22484853-22484853|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5452270507812 3 397.542821 1189.60663 0.099314 3.9481E-05 3.5513 0.0014118 3.6506 0.0014513 397.5444502612345 25.305 0.20491 22.422 22.309 22.514 -2.8831 19 11 2 0 0 0 0.6192 1 13864 13864 10.151 0.6066 1 2915900 + 22663 16750 15386 15677 26732 26732 0.0194148459072494 IHFGKTQIF 9 Unmodified _IHFGKTQIF_ 0 0 0 REV__ENSG00000153294|ENST00000283303|ADGRF4 REV__ENSG00000153294|ENST00000283303|ADGRF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2052307128906 3 364.206315 1089.59712 NaN NaN NaN NaN NaN NaN NaN 39.698 1 39.703 39.203 40.203 0.0050545 0 0 0 0.83812 1 21150 21150 2.9952 1.151 1 + 22664 21168 15387 15678 26733 26733 0.055900395768503586 IHFRPELPAE 10 Unmodified _IHFRPELPAE_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA;nc|ENSG00000189221|P21397-2|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5516662597656 3 403.552262 1207.63496 -0.28203 -0.00011381 -0.51453 -0.00020764 -0.79656 -0.00032145 403.55218786872155 41.953 0.16828 41.944 41.855 42.023 -0.0088196 12 7 2 0 0 0 0.69064 1 22482 22482 1.9064 0 1 3664700 22665 9736 15388 15679 26734 26734 0.03944505771664808 IHFRPGPTAI 10 Unmodified _IHFRPGPTAI_ 0 0 0 REV__ENSG00000164754|ENST00000297338|RAD21 REV__ENSG00000164754|ENST00000297338|RAD21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.1894226074219 3 370.213581 1107.61891 1.7329 0.00064153 -3.0794 -0.00114 -1.3465 -0.0004985 370.21253109688445 20.482 0.15486 17.789 17.666 17.82 -2.693 13 7 2 0 0 0 0.23693 1 10846 10846 5.7834 4.4539 1 1172600 + 22666 21947 15389 15680 26735 26735 0.06940844325413309 IHFSLISESMQ 11 Unmodified _IHFSLISESMQ_ 0 0 0 REV__ENSG00000109452|ENST00000262992|INPP4B REV__ENSG00000109452|ENST00000262992|INPP4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8884582519531 3 431.216551 1290.62782 -0.46285 -0.00019959 -1.9415 -0.00083722 -2.4044 -0.0010368 431.2157702214298 31.91 0.18378 31.91 31.799 31.983 0 12 8 2 0 0 0 0.30565 1 16653 16653 2.2527 0.66045 1 1390100 + 22667 18657 15390 15681 26736 26736 -0.005865948910695806 IHFVYGLICL 10 Unmodified _IHFVYGLICL_ 0 0 0 REV__ENST00000357214.5_1_1:35649537-35649705:-|nuORF REV__ENST00000357214.5_1_1:35649537-35649705:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.2179260253906 3 393.219455 1176.63654 0.6981 0.00027451 0.51984 0.00020441 1.2179 0.00047892 393.5544032665158 47.256 0.28608 46.904 46.778 47.064 -0.3526 38 13 4 0 0 0 0.23821 1 25409 25409 2.086 0 1 8047400 + 22668 25844 15391 15682 26737 26737 0.05528423536088667 IHFYLVTLL 9 Unmodified _IHFYLVTLL_ 0 0 0 ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5596313476562 3 373.558466 1117.65357 0.74087 0.00027676 0.91453 0.00034163 1.6554 0.00061839 373.5590210407715 49.489 0.25835 49.44 49.35 49.609 -0.048824 21 12 2 0 0 0 0.53666 1 26752 26752 2.9952 0.26005 1 4370500 22669 15242 15392 15683 26738 26738 0.09944667413515162 IHFYLVTLL 9 Unmodified _IHFYLVTLL_ 0 0 0 ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.558466 1117.65357 0.80303 0.00029998 -0.092314 -3.4484E-05 0.71072 0.00026549 373.892809472042 49.866 0.15782 49.473 49.374 49.532 -0.3923 0.016386 -0.00040552 NaN 2.9952 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2027200 22670 15242 15392 15683 0.09944667413515162 IHGGSAAGF 9 Unmodified _IHGGSAAGF_ 0 0 0 REV__CON__P21578 REV__CON__P21578 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7038269042969 2 408.703577 815.392602 0.58968 0.000241 -0.091291 -3.7311E-05 0.49839 0.00020369 408.70345174425506 51.975 0.42325 46.24 46.107 46.53 -5.7345 43 28 2 0 0 0 0.28047 1 32895 32895 18.135 1.1927 1 62717000 + + 22671 16851 15393 15684 26739 26739 -0.02247899513668017 IHGLLFSSID 10 Unmodified _IHGLLFSSID_ 0 0 0 REV__ENSG00000185900|ENST00000331373|POMK REV__ENSG00000185900|ENST00000331373|POMK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3009643554688 2 551.300581 1100.58661 NaN NaN NaN NaN NaN NaN NaN 37.002 1 36.752 36.252 37.252 -0.2497 0 0 0 0.96627 1 19434 19434 4.3292 0 1 + 22672 23532 15394 15685 26740 26740 0.04034012131751297 IHGQDKSDV 9 Unmodified _IHGQDKSDV_ 0 0 0 nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000134160|Q7Z4N2-5|TRPM1 nc|ENSG00000134160|Q7Z4N2-2|TRPM1 nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2495727539062 2 499.748713 997.482873 0.0060719 3.0344E-06 0.82809 0.00041384 0.83416 0.00041687 500.24944204171567 44.51 0.13554 44.51 44.397 44.532 0 9 6 2 0 0 0 0.30562 1 24223 24223 16.942 2.104 1 4721300 22673 4564 15395 15686 26741 26741 -0.015968949759098905 IHHAHWVL 8 Unmodified _IHHAHWVL_ 0 0 0 nc|ENSG00000143502|Q5VX71-2|SUSD4 nc|ENSG00000143502|Q5VX71-2|SUSD4 nc|ENSG00000143502|Q5VX71-2|SUSD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7778015136719 2 506.777411 1011.54027 0.068695 3.4813E-05 -0.16303 -8.2619E-05 -0.094332 -4.7806E-05 506.7772021989808 49.099 0.34528 48.727 48.558 48.903 -0.37172 38 16 3 0 0 0 0.76859 1 26460 26460 11.114 0.29054 1 5356500 22674 16245 15396 15687 26742 26742 0.03496036810975056 IHHAHWVLF 9 Unmodified _IHHAHWVLF_ 0 0 0 nc|ENSG00000143502|Q5VX71-2|SUSD4 nc|ENSG00000143502|Q5VX71-2|SUSD4 nc|ENSG00000143502|Q5VX71-2|SUSD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3120727539062 2 580.311618 1158.60868 2.1994 0.0012764 -1.3998 -0.0008123 0.79966 0.00046405 580.3109017551885 93.121 0.43633 93.144 92.917 93.354 0.022987 48 16 4 0 0 0 0.1492 2 51813 51716;51813 28.173 7.302 1 10571000 22675 16245 15397 15688 26743;26744 26744 0.03572281390825083 IHHGLEEL 8 Unmodified _IHHGLEEL_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2510986328125 2 474.250892 946.48723 -0.41885 -0.00019864 1.518 0.00071993 1.0992 0.00052129 474.25111469668076 34.64 0.44367 34.64 34.384 34.827 0 75 22 5 0 0 0 0.44122 1 18224 18224 40.449 0.49126 1 20977000 + 22676 21728 15398 15689 26745 26745 0.011846142376612079 IHHGLEEL 8 Unmodified _IHHGLEEL_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2510986328125 2 474.250892 946.48723 -0.41885 -0.00019864 1.518 0.00071993 1.0992 0.00052129 474.25111469668076 34.64 0.44367 34.64 34.384 34.827 0 75 22 5 0 0 0 8.7369 1 18224 18224 40.449 8.3316 1 20977000 + 22677 21728 15398 15689 26746 26746 0.011846142376612079 IHHGLEEL 8 Unmodified _IHHGLEEL_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2514343261719 2 474.250892 946.48723 0.46692 0.00022144 0.31381 0.00014882 0.78072 0.00037026 474.25083645836565 38.785 0.50061 34.334 34.115 34.616 -4.4509 59 31 3 0 0 0 0.44122 1 22864 22864 40.449 0 1 52167000 + 22678 21728 15398 15689 26747 26747 0.011846142376612079 IHHGLEEL 8 Unmodified _IHHGLEEL_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 474.250892 946.48723 0.46692 0.00022144 0.31381 0.00014882 0.78072 0.00037026 474.25083645836565 38.785 0.50061 34.334 34.115 34.616 -4.4509 -0.15278 -0.00025567 NaN 40.449 59 31 3 NaN NaN NaN NaN 0 NaN NaN 0 52167000 + 22679 21728 15398 15689 0.011846142376612079 IHHNWPSLLRH 11 Unmodified _IHHNWPSLLRH_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.7355651855469 3 470.589822 1408.74764 0.60512 0.00028477 -0.45784 -0.00021546 0.14728 6.931E-05 470.58975237294817 43.607 0.29176 38.842 38.693 38.985 -4.7648 26 17 2 0 0 0 0.30565 1 26450 26450 2.2527 1.3272 1 5049300 22680 4347 15399 15690 26748 26748 0.05961199288367425 IHHVLEVY 8 Unmodified _IHHVLEVY_ 0 0 0 REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF REV__ENST00000482967.5_1_20:31946851-31989286:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2768249511719 2 505.276909 1008.53927 0.47891 0.00024198 0.80502 0.00040676 1.2839 0.00064874 505.27736993696465 49.155 0.40672 49.112 48.908 49.315 -0.04369 58 19 5 0 0 0 0.65867 1 26606 26606 20.871 1.6142 1 13358000 + 22681 18167 15400 15691 26749 26749 0.035337776514325014 IHIASISK 8 Unmodified _IHIASISK_ 0 0 0 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 MSMS AL20221201_MKP_PDAC_01 4 434.7673950195312 2 434.766178 867.517802 NaN NaN NaN NaN NaN NaN NaN 105.71 1 99.53 99.03 100.03 -6.1757 0 0 0 0.97444 1 70808 70808 2.3027 0 1 + 22682 23666 15401 15692 26750 26750 0.07874392622727555 IHIASISK 8 Unmodified _IHIASISK_ 0 0 0 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 REV__nc|ENSG00000187824|Q6QAJ8-2|TMEM220 MSMS AL20221201_MKP_PDAC_01 4 434.7674560546875 2 434.766178 867.517802 NaN NaN NaN NaN NaN NaN NaN 105.95 1 99.774 99.274 100.27 -6.1757 0 0 0 0.97444 1 70951 70951 0.6015 0 1 + 22683 23666 15401 15692 26751 26751 0.07874392622727555 IHIEEFVAL 9 Unmodified _IHIEEFVAL_ 0 0 0 REV__nc|ENSG00000090020|P19634-2|SLC9A1 REV__nc|ENSG00000090020|P19634-2|SLC9A1 MSMS AL20221201_MKP_PDAC_01 4 535.7998657226562 2 535.797675 1069.5808 NaN NaN NaN NaN NaN NaN NaN 33.48 1 29.494 28.994 29.994 -3.9853 0 0 0 0.20498 1 19201 19201 30.225 1.1432 1 + 22684 16756 15402 15693 26752 26752 0.04878913620086678 IHILLRQVV 9 Unmodified _IHILLRQVV_ 0 0 0 REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.3597412109375 2 545.858401 1089.70225 1.4831 0.00080957 -1.4711 -0.00080299 0.012047 6.5759E-06 545.8576534839351 106.08 0.87295 99.902 99.609 100.48 -6.1757 248 134 3 0 0 0 0.21893 1 70862 70862 0.52476 0.066424 1 7211500 + 22685 27949 15403 15694 26753 26753 0.16098580773268623 IHIWNDKEV 9 Unmodified _IHIWNDKEV_ 0 0 0 REV__nc|ENSG00000160293|P52735-3|VAV2 REV__nc|ENSG00000160293|P52735-3|VAV2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8062133789062 2 577.303655 1152.59276 2.399 0.001385 -4.4162 -0.0025495 -2.0172 -0.0011645 577.3017912921939 100.1 0.166 100.07 99.934 100.1 -0.036301 9 5 3 0 0 0 0.203 1 55530 55530 9.3474 1.4373 1 1117400 + 22686 21531 15404 15695 26754 26754 0.022565303632518408 IHKEQRKF 8 Unmodified _IHKEQRKF_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.4157409667969 3 362.545331 1084.61416 0.28438 0.0001031 -0.66781 -0.00024211 -0.38344 -0.00013901 362.54505497939454 49.004 0.60823 48.961 48.828 49.436 -0.04369 38 29 2 0 0 0 8.7369 1 26477 26477 6.7232 0 1 1284500 22687 10169 15405 15696 26755 26755 0.07523960182675182 IHKQEKRN 8 Unmodified _IHKQEKRN_ 0 0 0 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 REV__nc|ENSG00000288602|Q96BR1-2|SGK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2008666992188 3 351.536835 1051.58868 -0.74758 -0.0002628 -2.539 -0.00089254 -3.2866 -0.0011553 351.5359967312582 30.479 0.18409 30.479 30.402 30.587 0 12 8 2 0 0 0 8.7369 1 15825 15825 5.7319 0 1 1708800 + 22688 18341 15406 15697 26756 26756 0.06494485660232385 IHLFPFTL 8 Unmodified _IHLFPFTL_ 0 0 0 REV__nc|ENSG00000160218|P48553-2|TRAPPC10 REV__nc|ENSG00000160218|P48553-2|TRAPPC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2869873046875 2 494.286746 986.558939 0.97933 0.00048407 -0.72702 -0.00035935 0.25231 0.00012471 494.2867186498934 52.629 0.63438 46.895 46.635 47.269 -5.7345 65 34 2 0 0 0 0.57408 1 33319 33319 28.173 1.832 1 75532000 + 22689 21525 15407 15698 26757 26757 0.06512153662174569 IHLGYVVYSL 10 Unmodified _IHLGYVVYSL_ 0 0 0 nc|ENSG00000086200|Q9UI26-2|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5549621582031 3 388.553492 1162.63865 1.5255 0.00059274 1.0568 0.00041064 2.5823 0.0010034 388.5535756110043 20.985 0.44546 18.292 17.988 18.433 -2.693 43 26 2 0 0 0 0.66569 1 11091 11091 6.1918 2.8722 1 6040400 22690 16061 15408 15699 26758 26758 0.06383175545511222 IHLYHYSGP 9 Unmodified _IHLYHYSGP_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7750244140625 2 543.771991 1085.52943 0.19126 0.000104 1.5033 0.00081746 1.6946 0.00092146 543.7726946507984 92.511 0.39757 92.03 91.836 92.233 -0.48092 48 17 3 0 0 0 0.55144 1 50494 50494 4.3292 0 1 4865700 + 22691 17831 15409 15700 26759 26759 -0.009914103539585994 IHMIKQMEL 9 Unmodified _IHMIKQMEL_ 0 0 0 REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8811645507812 3 381.5402 1141.59877 NaN NaN NaN NaN NaN NaN NaN 20.333 1 20.343 19.843 20.843 0.010553 0 0 0 0.85261 1 10367 10367 1.1933 0.12188 1 + 22692 27501 15410 15701 26760 26760 0.03363589278978907 IHMPKHLEL 9 Unmodified _IHMPKHLEL_ 0 0 0 ENST00000430953.1_1_20:14738267-14738540:+|nuORF ENST00000430953.1_1_20:14738267-14738540:+|nuORF ENST00000430953.1_1_20:14738267-14738540:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3132934570312 2 559.312969 1116.61138 0.39326 0.00021995 -0.48367 -0.00027052 -0.090415 -5.057E-05 559.3127442087879 81.006 0.30372 81.006 80.84 81.143 0 32 13 3 0 0 0 0.55144 1 44931 44931 4.3292 4.3292 1 1519700 22693 13252 15411 15702 26761 26761 0.05774368733477786 IHMVGEGY 8 Unmodified _IHMVGEGY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2137451171875 2 453.212921 904.411288 0.038808 1.7588E-05 1.7773 0.00080549 1.8161 0.00082308 453.2135903334695 23.121 0.12733 23.121 23.036 23.163 0 9 6 2 0 0 0 0.80676 1 11781 11781 2.5775 0 1 250790 22694 6517 15412 15703 26762 26762 -0.04474105934104955 IHNGHLPSQ 9 Unmodified _IHNGHLPSQ_ 0 0 0 REV__ENSG00000106415|ENST00000223145|GLCCI1 REV__ENSG00000106415|ENST00000223145|GLCCI1 MSMS AL20221201_MKP_PDAC_01 4 501.7593688964844 2 501.759415 1001.50428 NaN NaN NaN NaN NaN NaN NaN 47.166 1 42.086 41.586 42.586 -5.0805 0 0 0 0.32177 1 29246 29246 24.021 1.2843 1 + 22695 18506 15413 15704 26763 26763 0.003585348434739899 IHNQEGATP 9 Unmodified _IHNQEGATP_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7378845214844 2 483.735606 965.456658 0.4263 0.00020621 3.8048 0.0018405 4.2311 0.0020467 483.73730173045885 46.127 0.21622 45.791 45.665 45.881 -0.33664 15 10 2 0 0 0 0.51218 1 24671 24671 6.7232 0.36906 1 6881900 22696 16379 15414 15705 26764 26764 -0.027451641473703603 IHPAFSIMALF 11 Unmodified _IHPAFSIMALF_ 0 0 0 ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2244567871094 3 416.22661 1245.658 0.51735 0.00021534 0.46689 0.00019433 0.98425 0.00040967 416.2264370515146 66.982 0.32106 67 66.857 67.178 0.018028 29 15 3 0 0 0 0.6249 1 36740 36740 5.0475 0 1 3172500 22697 13355 15415 15706 26765 26765 0.04499808564764862 IHPESFNLQ 9 Unmodified _IHPESFNLQ_ 0 0 0 ENSG00000168955|ENST00000304568|TM4SF20 ENSG00000168955|ENST00000304568|TM4SF20 ENSG00000168955|ENST00000304568|TM4SF20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1979370117188 3 362.185579 1083.53491 0.59287 0.00021473 -0.25079 -9.0831E-05 0.34209 0.0001239 362.18542608276397 36.612 0.3053 36.612 36.448 36.754 0 42 14 4 0 0 0 0.20528 1 19502 19502 5.2969 0.39987 1 14070000 22698 7820 15416 15707 26766 26766 -0.003517315621365924 IHPSSVSPF 9 Unmodified _IHPSSVSPF_ 0 0 0 REV__ENSG00000167595|ENST00000646935|PROSER3 REV__ENSG00000167595|ENST00000646935|PROSER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7532043457031 2 485.753267 969.491981 -0.15648 -7.601E-05 0.13858 6.7315E-05 -0.017899 -8.6944E-06 485.7531832827784 41.846 0.326 41.539 41.375 41.701 -0.30682 30 15 3 0 0 0 0.052168 1 22173 22173 44.407 14.182 1 13278000 + 22699 22222 15417 15708 26767 26767 0.006014983804334406 IHPSSVSPF 9 Unmodified _IHPSSVSPF_ 0 0 0 REV__ENSG00000167595|ENST00000646935|PROSER3 REV__ENSG00000167595|ENST00000646935|PROSER3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.75390625 2 485.753267 969.491981 0.75114 0.00036487 0.32267 0.00015674 1.0738 0.00052161 485.7535316793345 47.091 0.34366 42.011 41.81 42.154 -5.0805 53 31 2 0 0 0 0.087258 2 29233 29090;29233 36.044 14.298 1 52734000 + 22700 22222 15417 15708 26768;26769 26769 0.006014983804334406 IHPSSVSPF 9 Unmodified _IHPSSVSPF_ 0 0 0 REV__ENSG00000167595|ENST00000646935|PROSER3 REV__ENSG00000167595|ENST00000646935|PROSER3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 485.753267 969.491981 -0.15648 -7.601E-05 0.13858 6.7315E-05 -0.017899 -8.6944E-06 485.7531832827784 41.846 0.326 41.539 41.375 41.701 -0.30682 0 0 NaN 44.407 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 13278000 + 22701 22222 15417 15708 0.006014983804334406 IHQDTLRTMY 10 Unmodified _IHQDTLRTMY_ 0 0 0 nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3 nc|ENSG00000126070|Q9H9G7-2|AGO3 nc|ENSG00000126070|Q9H9G7-2|AGO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.5484619140625 3 426.548412 1276.62341 -0.473 -0.00020176 1.1343 0.00048381 0.66126 0.00028206 426.54871621636653 28.91 0.32013 28.91 28.723 29.043 0 35 14 3 0 0 0 0.69377 1 15018 15018 1.7423 0.96574 1 4824100 22702 3925 15418 15709 26770 26770 -0.0038405931395573134 IHQISLEIE 9 Unmodified _IHQISLEIE_ 0 0 0 REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3270263671875 2 541.298039 1080.58152 0.76437 0.00041375 3.0116 0.0016302 3.776 0.0020439 541.299284772453 64.569 0.26895 64.558 64.377 64.646 -0.010536 24 13 2 0 0 0 0.17331 1 35320 35320 22.736 7.898 1 1751500 + 22703 28824 15419 15710 26771 26771 0.04445708269122406 IHQLKQALI 9 Unmodified _IHQLKQALI_ 0 0 0 REV__ENST00000495407.1_1_10:121602688-121616909:-|nuORF REV__ENST00000495407.1_1_10:121602688-121616909:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.2261657714844 3 355.225598 1062.65496 1.2981 0.00046112 -0.06458 -2.294E-05 1.2335 0.00043818 355.22549669761605 18.074 0.43344 15.453 15.257 15.69 -2.6215 92 32 4 0 0 0 0.39863 1 9467 9467 12.241 0 1 31644000 + 22704 23957 15420 15711 26772 26772 0.12614301502276248 IHQLLHQFVP 10 Unmodified _IHQLLHQFVP_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 615.80419921875 2 616.35094 1230.68733 0.10837 6.6792E-05 -0.89034 -0.00054876 -0.78198 -0.00048197 616.3503275924841 65.618 0.46327 59.442 59.324 59.787 -6.1757 39 27 2 0 0 0 0.21952 1 42592 42592 15.847 15.847 1 22185000 22705 4014 15421 15712 26773 26773 0.08121088905249962 IHQLRHNGSL 10 Unmodified _IHQLRHNGSL_ 0 0 0 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 MSMS AL20221201_MKP_PDAC_01 4 392.2179565429688 3 392.219506 1173.63669 NaN NaN NaN NaN NaN NaN NaN 40.052 1 35.522 35.022 36.022 -4.5294 0 0 0 0.94046 1 23864 23864 6.1918 0.46 1 + 22706 22272 15422 15713 26774 26774 0.05681559580261819 IHQTLGGYY 9 Unmodified _IHQTLGGYY_ 0 0 0 ENSG00000082293|ENST00000620364|COL19A1 ENSG00000082293|ENST00000620364|COL19A1 ENSG00000082293|ENST00000620364|COL19A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2623291015625 2 526.263999 1050.51345 NaN NaN NaN NaN NaN NaN NaN 81.01 1 81.01 80.51 81.51 0 0 0 0 0.84369 1 44972 44972 2.3027 0.4585 1 22707 1344 15423 15714 26775 26775 -0.009791165908382027 IHQVETKP 8 Unmodified _IHQVETKP_ 0 0 0 ENSG00000147059|ENST00000374906|SPIN2A ENSG00000147059|ENST00000374906|SPIN2A ENSG00000147059|ENST00000374906|SPIN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2674865722656 2 476.266542 950.51853 0.40498 0.00019288 0.94359 0.0004494 1.3486 0.00064228 476.26706206436995 40.427 0.27762 40.432 40.316 40.593 0.0050583 19 12 2 0 0 0 0.52622 1 21563 21563 32.305 0 1 2987100 22708 5816 15424 15715 26776 26776 0.04129187271769297 IHRIGGAI 8 Unmodified _IHRIGGAI_ 0 0 0 REV__ENSG00000151376|ENST00000524826|ME3 REV__ENSG00000151376|ENST00000524826|ME3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.5192260742188 2 418.758687 835.502821 1.4417 0.00060373 1.3498 0.00056523 2.7915 0.001169 418.7593090099075 100.4 0.12003 94.229 94.171 94.291 -6.1757 11 7 2 0 0 0 8.7369 1 67105 67105 2.8892 0 1 14733000 + 22709 21064 15425 15716 26777 26777 0.07848945545379138 IHRLLLIQA 9 Unmodified _IHRLLLIQA_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8507690429688 2 538.850576 1075.6866 1.4507 0.00078171 1.0065 0.00054238 2.4572 0.0013241 538.849977183218 104.71 0.11084 98.532 98.438 98.549 -6.1757 10 6 2 0 0 0 0.58865 1 70106 70106 2.0598 0 1 6462700 22710 9907 15426 15717 26778 26778 0.15178294256247682 IHSLFPVL 8 Unmodified _IHSLFPVL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.279052734375 2 463.278921 924.543289 -0.46464 -0.00021526 0.99174 0.00045945 0.5271 0.00024419 463.27977563226574 77.026 0.26398 76.546 76.437 76.701 -0.47945 17 11 2 0 0 0 0.77907 1 42177 42177 10.183 0 1 398500 22711 5781 15427 15718 26779 26779 0.0779986714513825 IHSLFPVL 8 Unmodified _IHSLFPVL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2789916992188 2 463.278921 924.543289 0.23066 0.00010686 0.36065 0.00016708 0.59131 0.00027394 463.2789774468404 76.461 0.42126 76.509 76.299 76.72 0.047951 39 17 3 0 0 0 0.32412 2 42153 42153;42256 52.693 0 1 6578200 22712 5781 15427 15718 26780;26781 26780 0.0779986714513825 IHSLFPVL 8 Unmodified _IHSLFPVL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2794494628906 2 463.278921 924.543289 1.2549 0.00058136 0.038997 1.8067E-05 1.2939 0.00059943 463.27883379678184 96.402 0.25083 90.226 90.069 90.32 -6.1757 35 14 3 0 0 0 0.32412 1 63834 63834 52.693 0 1 60279000 22713 5781 15427 15718 26782 26782 0.0779986714513825 IHSLFPVL 8 Unmodified _IHSLFPVL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 463.278921 924.543289 0.23066 0.00010686 0.36065 0.00016708 0.59131 0.00027394 463.2789774468404 76.461 0.42126 76.509 76.299 76.72 0.047951 -0.018606 -8.5239E-05 NaN 52.693 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6578200 22714 5781 15427 15718 0.0779986714513825 IHSLNSSIKDP 11 Unmodified _IHSLNSSIKDP_ 0 0 0 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2186584472656 3 404.21906 1209.63535 -0.59001 -0.00023849 -0.26138 -0.00010566 -0.85139 -0.00034415 404.2186649140892 18.143 0.20126 18.143 18.046 18.247 0 57 24 3 0 0 0 0.61059 1 8996 8996 5.8681 0.084707 1 6250000 22715 1343 15428 15719 26783 26783 0.038918807008712974 IHSLYDAHLFR 11 Unmodified _IHSLYDAHLFR_ 0 0 0 REV__ENSG00000089775|ENST00000608382|ZBTB25 REV__ENSG00000089775|ENST00000608382|ZBTB25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.9101257324219 3 457.910449 1370.70952 1.1372 0.00052072 -0.504 -0.00023079 0.63316 0.00028993 457.9102645185396 64.193 0.34003 64.182 64.037 64.377 -0.010529 50 16 4 0 0 0 0.69838 1 35113 35113 4.4062 0.28952 1 26074000 + 22716 17846 15429 15720 26784 26784 0.03899268583018056 IHSLYDAHLFR 11 Unmodified _IHSLYDAHLFR_ 0 0 0 REV__ENSG00000089775|ENST00000608382|ZBTB25 REV__ENSG00000089775|ENST00000608382|ZBTB25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.9107055664062 3 457.910449 1370.70952 1.2126 0.00055526 0.16145 7.3931E-05 1.374 0.00062919 457.9104573810398 94.081 0.20584 87.905 87.806 88.012 -6.1757 33 11 4 0 0 0 0.69838 1 62287 62287 4.4062 1.7749 1 38545000 + 22717 17846 15429 15720 26785 26785 0.03899268583018056 IHSLYDAHLFR 11 Unmodified _IHSLYDAHLFR_ 0 0 0 REV__ENSG00000089775|ENST00000608382|ZBTB25 REV__ENSG00000089775|ENST00000608382|ZBTB25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.3613891601562 2 686.362036 1370.70952 1.2673 0.0008698 0.38915 0.00026709 1.6564 0.0011369 686.3617956881637 94.076 0.15448 87.9 87.806 87.96 -6.1757 18 8 3 0 0 0 0.557 1 62305 62305 22.736 10.496 1 13270000 + 22718 17846 15429 15720 26786 26786 0.03899268583018056 IHSPAHPE 8 Unmodified _IHSPAHPE_ 0 0 0 ENSG00000198093|ENST00000354957|ZNF649 ENSG00000198093|ENST00000354957|ZNF649 ENSG00000198093|ENST00000354957|ZNF649 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2228088378906 2 444.222134 886.429715 1.2078 0.00053655 0.55133 0.00024491 1.7592 0.00078146 444.2222918564005 49.551 0.47472 49.502 49.331 49.805 -0.048824 60 23 3 0 0 0 0.80232 1 26743 26743 5.2307 0 1 18053000 22719 10050 15430 15721 26787 26787 -0.018042279679093554 IHSPQLFHL 9 Unmodified _IHSPQLFHL_ 0 0 0 REV__ENSG00000068097|ENST00000184956|HEATR6 REV__ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.5383605957031 3 364.538064 1090.59236 -0.27566 -0.00010049 -0.08137 -2.9662E-05 -0.35703 -0.00013015 364.53800203460173 51.296 0.2939 51.242 51.087 51.381 -0.053871 32 14 4 0 0 0 0.2143 1 27793 27793 15.248 1.6336 1 2664700 + 22720 17431 15431 15722 26788 26788 0.050691554340801304 IHTVMRANP 9 Unmodified _IHTVMRANP_ 0 0 0 REV__ENSG00000166670|ENST00000279441|MMP10 REV__ENSG00000166670|ENST00000279441|MMP10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1038.88818359375 1 1038.55131 1037.54403 0.37844 0.00039303 1.5858 0.001647 1.9643 0.00204 1039.5531284028555 52.064 0.65752 51.63 51.346 52.003 -0.43367 43 33 2 0 0 0 0.21367 1 27985 27985 2.0598 0 1 2618300 + 22721 22140 15432 15723 26789 26789 0.0267633852254221 IHTWPTEP 8 Unmodified _IHTWPTEP_ 0 0 0 REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF REV__ENST00000551915.5_1_12:83081308-83379891:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2440795898438 2 490.745442 979.476331 -1.0532 -0.00051686 0.30725 0.00015078 -0.74597 -0.00036608 490.74556586337377 32.607 0.27166 32.607 32.481 32.753 0 28 14 3 0 0 0 8.7369 1 17024 17024 24.674 6.5389 1 4466200 + 22722 23087 15433 15724 26790 26790 -0.014227881366196016 IHVLHVNKF 9 Unmodified _IHVLHVNKF_ 0 0 0 ENST00000524495.5_1_11:7669669-7672116:+|nuORF;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2;ENST00000528929.1_1_11:7670445-7672214:+|nuORF ENST00000524495.5_1_11:7669669-7672116:+|nuORF ENST00000524495.5_1_11:7669669-7672116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5538940429688 3 369.553826 1105.63965 -0.25079 -9.2682E-05 0.68412 0.00025282 0.43332 0.00016014 369.55391388793146 32.001 0.26746 32.031 31.906 32.173 0.030102 27 11 4 0 0 0 0.023481 1 16803 16803 60.074 30.992 1 2832700 22723 7480 15434 15725 26791 26791 0.09105434705088555 IHVTKQKHL 9 Unmodified _IHVTKQKHL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5623779296875 3 368.560981 1102.66111 1.2284 0.00045272 0.88858 0.00032749 2.1169 0.00078022 368.5613490168929 44.402 0.31717 39.55 39.383 39.701 -4.852 38 23 2 0 0 0 0.48152 1 27082 27082 5.2969 0 1 15862000 22724 6489 15435 15726 26792 26792 0.11388819733792843 IHVTSVAF 8 Unmodified _IHVTSVAF_ 0 0 0 REV__AGAP6|p.S524Afs*69|1|0.14|ENSG00000204149|chr10:50009759-50009759|A/-|frameshift_variant REV__AGAP6|p.S524Afs*69|1|0.14|ENSG00000204149|chr10:50009759-50009759|A/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.867919921875 2 437.245078 872.475603 0.55757 0.00024379 0.68777 0.00030072 1.2453 0.00054452 437.2454464301652 52.323 0.19307 51.889 51.749 51.942 -0.43367 13 9 2 0 0 0 8.7369 1 28247 28247 6.3541 0.59368 1 828150 + 22725 16704 15436 15727 26793 26793 0.03426417214336652 IHWIMDIPF 9 Unmodified _IHWIMDIPF_ 0 0 0 nc|ENSG00000109472|P16870-2|CPE;ENSG00000109472|ENST00000402744|CPE nc|ENSG00000109472|P16870-2|CPE nc|ENSG00000109472|P16870-2|CPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2040710449219 3 391.203805 1170.58959 -0.46858 -0.00018331 2.6868 0.0010511 2.2182 0.00086778 391.2050188014127 25.132 0.1509 25.132 25.051 25.202 0 9 7 2 0 0 0 0.58466 1 12879 12879 1.1933 0.12188 1 762920 22726 2651 15437 15728 26794 26794 0.011115639848867431 IHWIYWMKYKR 11 Unmodified _IHWIYWMKYKR_ 0 0 0 ENST00000312814.10_1_7:112424908-112424962:-|nuORF;ENST00000449743.1_1_7:112423795-112424962:-|nuORF ENST00000312814.10_1_7:112424908-112424962:-|nuORF ENST00000312814.10_1_7:112424908-112424962:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.9558715820312 3 541.958746 1622.85441 NaN NaN NaN NaN NaN NaN NaN 31.127 1 31.157 30.657 31.657 0.030106 0 0 0 0.9428 1 16296 16296 0.50596 0.051438 1 22727 11704 15438 15729 26795 26795 0.06789613458499844 IHYNSVVN 8 Unmodified _IHYNSVVN_ 0 0 0 nc|ENSG00000068308|Q96G74-4|OTUD5;nc|ENSG00000068308|Q96G74-2|OTUD5;nc|ENSG00000068308|Q96G74-3|OTUD5;ENSG00000068308|ENST00000376488|OTUD5;nc|ENSG00000068308|Q96G74|OTUD5 nc|ENSG00000068308|Q96G74-4|OTUD5 nc|ENSG00000068308|Q96G74-4|OTUD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2430114746094 2 473.243067 944.47158 0.95765 0.0004532 -0.86988 -0.00041166 0.087778 4.154E-05 473.2432316732381 30.408 0.23474 26.911 26.757 26.992 -3.497 15 11 2 0 0 0 0.61462 1 17179 17179 24.674 8.8267 1 8697300 22728 975 15439 15730 26796 26796 -0.0028767227937578355 IHYPLSQL 8 Unmodified _IHYPLSQL_ 0 0 0 REV__ENSG00000109929|ENST00000264027|SC5D REV__ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7706604003906 2 485.77146 969.528367 0.7083 0.00034407 -3.7441 -0.0018188 -3.0358 -0.0014747 485.7700656254109 43.534 0.37209 38.769 38.677 39.05 -4.7648 36 22 2 0 0 0 0.28079 1 26567 26567 57.471 9.7227 1 8371900 + 22729 18679 15440 15731 26797 26797 0.042383752771456784 IHYPLSQL 8 Unmodified _IHYPLSQL_ 0 0 0 REV__ENSG00000109929|ENST00000264027|SC5D REV__ENSG00000109929|ENST00000264027|SC5D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.77146 969.528367 0.56424 0.00027409 -3.8486 -0.0018695 -3.2844 -0.0015955 485.7695602059079 38.568 0.31113 38.568 38.414 38.725 0 -0.10073 -1.4518E-05 NaN 57.471 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2735800 + 22730 18679 15440 15731 0.042383752771456784 IIAEVKAQY 9 Unmodified _IIAEVKAQY_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;ENST00000546453.1_1_12:53215658-53224087:-|nuORF;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000547890.5_1_12:52910884-52911722:-|nuORF ENSG00000167768|ENST00000252244|KRT1;CON__P05787;CON__P35908;ENSG00000185479|ENST00000252252|KRT6B;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7980346679688 2 517.797675 1033.5808 0.82614 0.00042777 -0.25536 -0.00013222 0.57079 0.00029555 517.7977073465961 42.319 0.203 37.634 37.544 37.747 -4.6846 19 12 2 0 0 0 0.039985 1 25598 25598 49.933 15.531 1 6668700 + 22731 165;199;7667;177;150;9374;170;211 15441 15732 26798 26798 0.06534913620089355 IICDVCTCEL 10 3 Carbamidomethyl (C) _IIC(Carbamidomethyl (C))DVC(Carbamidomethyl (C))TC(Carbamidomethyl (C))EL_ IIC(1)DVC(1)TC(1)EL IIC(89)DVC(89)TC(89)EL 0 3 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.7769775390625 2 641.777441 1281.54033 0.89649 0.00057535 -1.1296 -0.00072493 -0.23307 -0.00014958 641.7767406016792 61.153 0.41678 55.005 54.778 55.195 -6.1478 45 21 3 0 0 0 0.0093317 2 39314 39314;39455 88.904 26.331 1 39036000 22732 4412 15442 15733 26799;26800 26799 451;452;453 -0.08917880148510449 IICLKNLVHI 10 Unmodified _IICLKNLVHI_ 0 0 0 ENST00000479552.1_1_2:191760498-191760627:+|nuORF ENST00000479552.1_1_2:191760498-191760627:+|nuORF ENST00000479552.1_1_2:191760498-191760627:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2419128417969 3 389.242372 1164.70529 0.20729 8.0685E-05 -0.94183 -0.0003666 -0.73455 -0.00028592 389.242010436282 61.148 0.91361 61.104 60.726 61.64 -0.04351 102 45 3 0 0 0 0.71123 1 33207 33207 0.69767 0.19171 1 8856200 22733 14040 15443 15734 26801 26801 0.12952087835788006 IICTTYMTF 9 Unmodified _IICTTYMTF_ 0 0 0 REV__nc|ENSG00000168959|P41594-3|GRM5;REV__ENSG00000164082|ENST00000395052|GRM2;REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7587890625 2 546.758846 1091.50314 0.66128 0.00036156 0.62489 0.00034166 1.2862 0.00070322 546.7592611136794 58.404 0.21754 58.343 58.235 58.452 -0.060719 16 10 2 0 0 0 0.48152 1 31814 31814 8.5933 3.3626 1 1805300 + 22734 24067;21865;22364 15444 15735 26802 26802 -0.03895183631971122 IICTTYMTF 9 Unmodified _IICTTYMTF_ 0 0 0 REV__nc|ENSG00000168959|P41594-3|GRM5;REV__ENSG00000164082|ENST00000395052|GRM2;REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.758846 1091.50314 0.66128 0.00036156 0.62489 0.00034166 1.2862 0.00070322 546.7592611136794 58.404 0.21754 58.343 58.235 58.452 -0.060719 0 0 NaN 8.5933 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1805300 + 22735 24067;21865;22364 15444 15735 -0.03895183631971122 IIDARTHQI 9 Unmodified _IIDARTHQI_ 0 0 0 REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.3211059570312 2 533.803823 1065.59309 0.55866 0.00029821 3.7406 0.0019967 4.2993 0.002295 533.8057996740079 99.126 0.18279 92.95 92.807 92.99 -6.1757 17 10 3 0 0 0 0.19891 1 65824 65824 11.64 2.2929 1 60099000 + 22736 26819 15445 15736 26803 26803 0.06291950083141273 IIDGKIFCV 9 Carbamidomethyl (C) _IIDGKIFC(Carbamidomethyl (C))V_ IIDGKIFC(1)V IIDGKIFC(46)V 0 1 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7944946289062 2 532.794078 1063.5736 1.0571 0.00056324 0.85398 0.00045499 1.9111 0.0010182 532.7940288962892 71.035 0.74726 64.859 64.496 65.243 -6.1757 58 37 2 0 0 0 0.047788 1 46564 46564 45.7 13.394 1 22033000 22737 6041 15446 15737 26804 26804 603 0.044358577480352324 IIDHKHPLL 9 Unmodified _IIDHKHPLL_ 0 0 0 REV__ENST00000452420.5_1_21:34968037-34971579:-|nuORF REV__ENST00000452420.5_1_21:34968037-34971579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.554931640625 3 362.553715 1084.63931 1.4294 0.00051823 0.50199 0.000182 1.9314 0.00070023 362.55401084301093 22.24 0.63102 19.505 19.102 19.733 -2.7348 80 34 4 0 0 0 0.54213 1 11854 11854 4.897 0.36815 1 10563000 + 22738 24241 15447 15738 26805 26805 0.10038014985207155 IIDKEVSL 8 Unmodified _IIDKEVSL_ 0 0 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7711181640625 2 458.771126 915.527698 0.45612 0.00020925 -0.19018 -8.725E-05 0.26594 0.000122 458.77107058958035 40.091 0.26295 40.091 39.952 40.214 0 38 12 4 0 0 0 0.17811 1 21494 21494 78.728 4.3053 1 16815000 22739 9768 15448 15739 26806 26806 0.06655535837421667 IIDKEVSL 8 Unmodified _IIDKEVSL_ 0 0 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7715148925781 2 458.771126 915.527698 0.76988 0.0003532 -2.6005 -0.001193 -1.8306 -0.00083983 458.7712897923936 45.729 0.6411 40.774 40.45 41.091 -4.9549 99 42 3 0 0 0 0.17811 2 28149 28149;28292 78.728 11.384 1 38034000 22740 9768 15448 15739 26807;26808 26807 0.06655535837421667 IIDSKYDQIFI 11 Unmodified _IIDSKYDQIFI_ 0 0 0 REV__nc|ENSG00000106692|O75072-2|FKTN REV__nc|ENSG00000106692|O75072-2|FKTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.8674926757812 2 677.866285 1353.71802 0.98924 0.00067057 0.43522 0.00029502 1.4245 0.00096559 678.3682070118504 101.44 0.15846 95.262 95.192 95.351 -6.1757 17 7 4 0 0 0 0.42108 1 68060 68060 20.415 2.0414 1 45729000 + 22741 18531 15449 15740 26809 26809 0.05530777708986534 IIDSTNIIF 9 Unmodified _IIDSTNIIF_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2900390625 2 518.289682 1034.56481 0.44257 0.00022938 0.70973 0.00036785 1.1523 0.00059723 518.2897888845636 79.158 0.3842 78.672 78.485 78.87 -0.48596 39 16 3 0 0 0 0.16226 2 43305 43305;43412 26.884 5.137 1 2821900 22742 9978 15450 15741 26810;26811 26810 0.048912073831616 IIDSTNIIF 9 Unmodified _IIDSTNIIF_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1;ENST00000524933.1_1_11:13716477-13732426:+|nuORF ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2914428710938 2 518.289682 1034.56481 1.1943 0.00061899 -0.098256 -5.0925E-05 1.096 0.00056807 518.28960616193 86.86 0.43833 80.684 80.492 80.93 -6.1757 35 23 2 0 0 0 0.016184 1 57217 57217 67.344 5.9864 1 16942000 22743 9978 15450 15741 26812 26812 0.048912073831616 IIDWDELL 8 Unmodified _IIDWDELL_ 0 0 0 REV__ENSG00000068354|ENST00000376771|TBC1D25 REV__ENSG00000068354|ENST00000376771|TBC1D25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.2380065917969 2 508.768583 1015.52261 0.63078 0.00032092 2.4084 0.0012253 3.0392 0.0015462 508.7692916769486 90.359 0.26517 84.183 84.025 84.29 -6.1757 20 15 2 0 0 0 8.7369 1 59728 59728 10.183 0.83596 1 6574800 + 22744 17435 15451 15742 26813 26813 0.015472319748027985 IIEDEQEEF 9 Unmodified _IIEDEQEEF_ 0 0 0 REV__nc|ENSG00000165409|P16473|TSHR REV__nc|ENSG00000165409|P16473|TSHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2581176757812 2 576.258776 1150.503 1.2272 0.00070721 -1.443 -0.00083152 -0.21571 -0.0001243 576.2578422130292 101.16 0.21397 94.984 94.85 95.064 -6.1757 28 12 3 0 0 0 0.1773 1 67865 67865 25.399 0.72543 1 83722000 + 22745 22009 15452 15743 26814 26814 -0.06623188826620208 IIEESYEF 8 Unmodified _IIEESYEF_ 0 0 0 nc|ENSG00000183023|P32418-2|SLC8A1;nc|ENSG00000183023|P32418-3|SLC8A1;nc|ENSG00000183023|P32418-4|SLC8A1;nc|ENSG00000183023|P32418-5|SLC8A1;ENSG00000183023|ENST00000332839|SLC8A1;ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-4|SLC8A3;nc|ENSG00000100678|P57103-5|SLC8A3 nc|ENSG00000183023|P32418-2|SLC8A1;ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2423706054688 2 515.242398 1028.47024 NaN NaN NaN NaN NaN NaN NaN 15.519 1 15.525 15.025 16.025 0.0057774 0 0 0 0.97444 1 7737 7737 0.69038 0 1 22746 1864;9109 15453 15744 26815 26815 -0.042853511588191395 IIELGQPAL 9 Unmodified _IIELGQPAL_ 0 0 0 REV__ENST00000394272.7_1_15:91474205-91474256:-|nuORF REV__ENST00000394272.7_1_15:91474205-91474256:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 476.78466796875 2 477.286943 952.559333 1.049 0.00050066 -1.8017 -0.00085994 -0.75277 -0.00035929 477.2863984051213 87.383 0.63455 81.207 80.788 81.422 -6.1757 52 34 2 0 0 0 0.17275 1 57530 57530 21.747 1.293 1 19991000 + 22747 26441 15454 15745 26816 26816 0.08115528591372367 IIENIVAVT 9 Unmodified _IIENIVAVT_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2930297851562 2 486.292225 970.569897 0.24601 0.00011963 0.33046 0.0001607 0.57647 0.00028033 486.2923377138319 78.93 0.42599 78.93 78.716 79.142 0 60 19 4 0 0 0 0.19127 1 43785 43785 24.021 2.2739 1 7268600 22748 8108 15455 15746 26817 26817 0.08343511245811897 IIENIVAVT 9 Unmodified _IIENIVAVT_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENST00000574823.5_1_16:11935494-11935832:-|nuORF;nc|ENSG00000171490|O76021-2|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 971.576904296875 1 971.577174 970.569897 0.7333 0.00071245 -0.56762 -0.00055149 0.16568 0.00016097 971.5764395396535 79.447 0.36887 78.958 78.727 79.096 -0.48932 33 15 3 0 0 0 0.05447 1 43448 43448 43.858 3.901 1 3540400 22749 8108 15455 15746 26818 26818 0.08343511245811897 IIERCSAE 8 Unmodified _IIERCSAE_ 0 0 0 ENSG00000198844|ENST00000361926|ARHGEF15 ENSG00000198844|ENST00000361926|ARHGEF15 ENSG00000198844|ENST00000361926|ARHGEF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.450927734375 1 920.450593 919.443317 0.35254 0.00032449 -0.12339 -0.00011358 0.22915 0.00021092 920.4504066251521 82.756 0.3495 82.258 82.053 82.402 -0.49751 23 14 2 0 0 0 0.60622 1 45336 45336 25.399 3.6527 1 1177800 22750 10172 15456 15747 26819 26819 -0.019627382509838753 IIFCETKKN 9 Carbamidomethyl (C) _IIFC(Carbamidomethyl (C))ETKKN_ IIFC(1)ETKKN IIFC(68)ETKKN 0 1 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.8082275390625 2 576.807716 1151.60088 0.12095 6.9764E-05 -0.71773 -0.00041399 -0.59678 -0.00034423 576.8077924340406 98.825 0.44667 92.649 92.493 92.94 -6.1757 54 31 2 0 0 0 0.015445 1 65598 65598 68.081 20.332 1 91972000 22751 2506 15457 15748 26820 26820 252 0.031143412884148347 IIFETPLRV 9 Unmodified _IIFETPLRV_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3295288085938 2 544.329142 1086.64373 0.061849 3.3666E-05 -4.1961 -0.0022841 -4.1342 -0.0022504 544.8261579529768 72.619 0.21263 72.661 72.507 72.719 0.041733 15 9 2 0 0 0 0.094149 1 39982 39982 34.402 9.0024 1 1718200 22752 3070;16132 15458 15749 26821 26821 0.10387479408132094 IIFHLHRKAI 10 Unmodified _IIFHLHRKAI_ 0 0 0 REV__ENSG00000180917|ENST00000434935|CMTR2 REV__ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3894653320312 2 624.3904 1246.76625 1.3615 0.00085012 -0.96523 -0.00060268 0.3963 0.00024745 624.389369613785 105.79 0.89849 99.617 99.416 100.31 -6.1757 293 119 4 0 0 0 0.72247 1 70801 70801 0.40072 0.093686 1 16001000 + 22753 23175 15459 15750 26822 26822 0.15273360930223134 IIFIKLNL 8 Unmodified _IIFIKLNL_ 0 0 0 ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3238830566406 2 487.325871 972.637189 NaN NaN NaN NaN NaN NaN NaN 104.8 1 104.75 104.25 105.25 -0.048737 0 0 0 0.97444 1 58182 58182 0.69038 0 1 22754 12012 15460 15751 26823 26823 0.14977586247391628 IIFIKLNL 8 Unmodified _IIFIKLNL_ 0 0 0 ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.3261413574219 2 487.325871 972.637189 NaN NaN NaN NaN NaN NaN NaN 109.41 1 103.23 102.73 103.73 -6.1757 0 0 0 0.97444 1 73068 73068 0.69038 0 1 22755 12012 15460 15751 26824 26824 0.14977586247391628 IIFIKLNL 8 Unmodified _IIFIKLNL_ 0 0 0 ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF ENST00000344302.8_1_X:46332443-46332647:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.3245849609375 2 487.325871 972.637189 NaN NaN NaN NaN NaN NaN NaN 109.96 1 103.79 103.29 104.29 -6.1757 0 0 0 0.97444 1 73410 73410 0.69038 0 1 22756 12012 15460 15751 26825 26825 0.14977586247391628 IIFPQLPPTQL 11 Unmodified _IIFPQLPPTQL_ 0 0 0 ENST00000582583.4_1_17:20885020-20885254:+|nuORF ENST00000582583.4_1_17:20885020-20885254:+|nuORF ENST00000582583.4_1_17:20885020-20885254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.919677734375 3 422.920063 1265.73836 -0.17077 -7.2221E-05 -0.82414 -0.00034855 -0.99491 -0.00042077 422.919753509938 37.254 0.33423 37.276 37.108 37.442 0.021545 55 14 5 0 0 0 0.67892 1 19821 19821 6.2344 0.83165 1 40459000 22757 15574 15461 15752 26826 26826 0.1161199315945396 IIFVPVPQL 9 Unmodified _IIFVPVPQL_ 0 0 0 ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7 ENST00000479123.1_1_2:3623223-3624265:+|nuORF ENST00000479123.1_1_2:3623223-3624265:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3245239257812 2 513.323328 1024.6321 1.2549 0.00064419 0.87171 0.00044747 2.1267 0.0010917 513.3240444866716 101.05 0.14357 94.879 94.78 94.923 -6.1757 15 7 3 0 0 0 0.016494 1 67733 67733 67.035 34.918 1 56324000 22758 8153 15462 15753 26827 26827 0.12077282384802857 IIGGYLHF 8 Unmodified _IIGGYLHF_ 0 0 0 REV__ENSG00000139826|ENST00000375898|ABHD13 REV__ENSG00000139826|ENST00000375898|ABHD13 MSMS AL20221201_MKP_PDAC_01 4 459.7872314453125 2 460.255446 918.496338 NaN NaN NaN NaN NaN NaN NaN 101.41 1 95.236 94.736 95.736 -6.1757 0 0 0 0.9185 1 68038 68038 17.087 0 1 + 22759 20433 15463 15754 26828 26828 0.0338300759399317 IIGRHKKRA 9 Unmodified _IIGRHKKRA_ 0 0 0 REV__ENSG00000163909|ENST00000372852|HEYL REV__ENSG00000163909|ENST00000372852|HEYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2376403808594 3 360.23672 1077.68833 -0.11116 -4.0043E-05 2.2317 0.00080395 2.1206 0.00076391 360.237715498476 35.249 0.29402 35.276 35.164 35.458 0.027401 22 13 2 0 0 0 0.47846 1 18605 18605 8.7454 3.0136 1 3488800 + 22760 21832 15464 15755 26829 26829 0.15259348064842015 IIGRHKKRA 9 Unmodified _IIGRHKKRA_ 0 0 0 REV__ENSG00000163909|ENST00000372852|HEYL REV__ENSG00000163909|ENST00000372852|HEYL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.23672 1077.68833 -0.11116 -4.0043E-05 2.2317 0.00080395 2.1206 0.00076391 360.237715498476 35.249 0.29402 35.276 35.164 35.458 0.027401 0 0 NaN 8.7454 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3488800 + 22761 21832 15464 15755 0.15259348064842015 IIGSHIDFY 9 Unmodified _IIGSHIDFY_ 0 0 0 REV__ENSG00000166153|ENST00000550587|DEPDC4 REV__ENSG00000166153|ENST00000550587|DEPDC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7506103515625 2 532.7742 1063.53385 0.71275 0.00037973 -0.98185 -0.0005231 -0.2691 -0.00014337 533.2751922277367 53.923 0.19718 53.923 53.748 53.945 0 12 8 2 0 0 0 0.19298 1 29884 29884 2.0598 0 1 862710 + 22762 22088 15465 15756 26830 26830 0.004620540689529662 IIGVHSIIY 9 Unmodified _IIGVHSIIY_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7880554199219 2 507.80276 1013.59097 0.083756 4.2532E-05 1.1958 0.00060721 1.2795 0.00064974 507.80329467371234 49.029 0.32474 48.657 48.578 48.903 -0.37172 17 15 2 0 0 0 0.18941 1 26316 26316 14.582 3.4672 1 1380800 + 22763 22821 15466 15757 26831 26831 0.08471521345336441 IIHAVIQEY 9 Unmodified _IIHAVIQEY_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.303466796875 2 543.303124 1084.5917 0.027826 1.5118E-05 0.21922 0.0001191 0.24704 0.00013422 543.3031392265225 45.42 0.17178 45.42 45.306 45.478 0 15 9 2 0 0 0 0.03568 1 24733 24733 52.268 16.141 1 12417000 22764 950 15467 15758 26832 26832 0.05278315994382865 IIHAVIQEY 9 Unmodified _IIHAVIQEY_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.30322265625 2 543.303124 1084.5917 -0.16108 -8.7518E-05 0.25253 0.0001372 0.091441 4.968E-05 543.3031675585456 45.655 0.25292 45.331 45.176 45.429 -0.32425 39 13 4 0 0 0 0.052168 1 24356 24356 44.407 12.102 1 114360000 22765 950 15467 15758 26833 26833 0.05278315994382865 IIHAVIQEY 9 Unmodified _IIHAVIQEY_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.3031005859375 2 543.303124 1084.5917 NaN NaN NaN NaN NaN NaN NaN 45.773 1 45.449 44.949 45.949 -0.32425 0 0 0 0.33856 1 24471 24471 23.148 11.508 1 22766 950 15467 15758 26834 26834 0.05278315994382865 IIHPNAMEKL 10 Unmodified _IIHPNAMEKL_ 0 0 0 nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13 nc|ENSG00000073803|O43283-5|MAP3K13 nc|ENSG00000073803|O43283-5|MAP3K13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5527954101562 3 389.218115 1164.63251 -0.46096 -0.00017941 0.87931 0.00034224 0.41835 0.00016283 389.2179087509456 25.088 0.10794 25.088 25.02 25.128 0 8 5 2 0 0 0 0.6966 1 12849 12849 1.5923 0.37745 1 504890 22767 1114 15468 15759 26835 26835 0.056783340423407935 IIIDSVPEV 9 Unmodified _IIIDSVPEV_ 0 0 0 ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7841796875 2 492.784233 983.553913 0.26501 0.0001306 -1.6492 -0.00081271 -1.3842 -0.00068211 492.7835387640864 69.081 0.48528 69.081 68.764 69.249 0 40 20 3 0 0 0 0.078417 1 38486 38486 38.151 2.107 1 2113700 22768 8410 15469 15760 26836 26836 0.06147805008913565 IIIDSVPEV 9 Unmodified _IIIDSVPEV_ 0 0 0 ENSG00000174306|ENST00000683867|ZHX3;nc|ENSG00000174306|Q9H4I2-2|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 ENSG00000174306|ENST00000683867|ZHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 984.56298828125 1 984.561189 983.553913 -0.20835 -0.00020513 0.53902 0.0005307 0.33067 0.00032557 984.56231990157 69.611 0.2701 69.132 69.02 69.29 -0.47903 15 11 2 0 0 0 0.2001 1 38039 38039 23.148 0 1 685830 22769 8410 15469 15760 26837 26837 0.06147805008913565 IIIETMGVP 9 Unmodified _IIIETMGVP_ 0 0 0 ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3;ENST00000415191.6_1_11:73824618-73881837:-|nuORF;nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5446166992188 1 972.543431 971.536154 0.8982 0.00087354 0.97884 0.00095196 1.877 0.0018255 972.5433680952674 100.26 0.24486 94.086 93.957 94.202 -6.1757 37 14 3 0 0 0 0.068777 1 66983 66983 40.449 4.4044 1 76121000 22770 7703 15470 15761 26838 26838 0.04924766482417908 IIIHIIGEVF 10 Unmodified _IIIHIIGEVF_ 0 0 0 ENST00000311806.7_1_3:38295131-38295401:+|nuORF ENST00000311806.7_1_3:38295131-38295401:+|nuORF ENST00000311806.7_1_3:38295131-38295401:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2388916015625 3 385.237504 1152.69068 1.626 0.0006264 3.9455 0.0015199 5.5715 0.0021463 385.2395703938188 53.933 0.63305 48.068 47.65 48.283 -5.8653 65 38 2 0 0 0 0.60623 1 33973 33973 9.544 0 1 15733000 22771 11696 15471 15762 26839 26839 0.12044338959299239 IIIKPLPGY 9 Unmodified _IIIKPLPGY_ 0 0 0 ENSG00000125772|ENST00000379019|GPCPD1;ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENSG00000125772|ENST00000379019|GPCPD1;ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENSG00000125772|ENST00000379019|GPCPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.32373046875 2 507.323328 1012.6321 0.68923 0.00034966 0.37807 0.0001918 1.0673 0.00054147 507.3233825230789 58.759 0.17687 58.699 58.624 58.801 -0.060719 13 8 2 0 0 0 0.18465 1 32034 32034 24.674 13.034 1 1231100 22772 3880;13285 15472 15763 26840 26840 0.1262928238479617 IIILFYCAI 9 Unmodified _IIILFYCAI_ 0 0 0 nc|ENSG00000164038|Q86UD5-2|SLC9B2;ENSG00000164038|ENST00000394785|SLC9B2 nc|ENSG00000164038|Q86UD5-2|SLC9B2 nc|ENSG00000164038|Q86UD5-2|SLC9B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8771667480469 3 356.876918 1067.60893 1.5664 0.00055901 -0.083104 -2.9658E-05 1.4833 0.00052935 356.8765256043362 33.327 0.26374 29.342 29.205 29.469 -3.9853 22 14 2 0 0 0 0.3554 1 19098 19098 13.906 1.6654 1 14197000 22773 7117 15473 15764 26841 26841 0.07782520275804927 IIILPDCL 8 Carbamidomethyl (C) _IIILPDC(Carbamidomethyl (C))L_ IIILPDC(1)L IIILPDC(43)L 0 1 0 nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7780151367188 2 478.777896 955.54124 1.7237 0.00082529 2.189 0.0010481 3.9128 0.0018734 478.7773743798451 100.84 0.17725 94.667 94.556 94.734 -6.1757 23 11 3 0 0 0 0.41521 1 67572 67572 42.968 6.5019 1 27541000 22774 3718 15474 15765 26842 26842 369 0.061690703450153705 IIKGVTVI 8 Unmodified _IIKGVTVI_ 0 0 0 nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13 nc|ENSG00000113597|A5PLN9-7|TRAPPC13 nc|ENSG00000113597|A5PLN9-7|TRAPPC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.7901611328125 2 421.789121 841.56369 1.6126 0.00068016 -0.37702 -0.00015902 1.2355 0.00052114 421.7888312210212 95.561 0.19854 89.385 89.282 89.481 -6.1757 26 11 3 0 0 0 0.58902 1 63270 63270 26.884 0 1 37401000 22775 2981 15475 15766 26843 26843 0.13657037804921401 IIKLQKQLW 9 Unmodified _IIKLQKQLW_ 0 0 0 REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF REV__ENST00000488174.5_1_X:70766398-70766500:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.361572265625 2 585.373884 1168.73321 NaN NaN NaN NaN NaN NaN NaN 103.59 1 103.54 103.04 104.04 -0.047928 0 0 0 0.85798 1 57530 57530 0.52476 0.12405 1 + 22776 27837 15476 15767 26844 26844 0.1555973408749196 IIKWLHRKSK 10 Unmodified _IIKWLHRKSK_ 0 0 0 REV__nc|ENSG00000144452|Q86UK0-2|ABCA12 REV__nc|ENSG00000144452|Q86UK0-2|ABCA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.4192504882812 2 654.916781 1307.81901 1.4417 0.00094416 -1.0605 -0.00069453 0.38116 0.00024963 654.9157536251317 105.74 0.64306 99.566 99.396 100.04 -6.1757 166 76 3 0 0 0 0.71535 1 70774 70774 1.1933 0.66858 1 9170400 + 22777 20710 15477 15768 26845 26845 0.177413189930121 IILEEGKEILV 11 Unmodified _IILEEGKEILV_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.3804321289062 2 628.379029 1254.7435 -0.13976 -8.7823E-05 0.64691 0.0004065 0.50715 0.00031868 628.3796955288109 65.722 0.1884 65.238 65.101 65.289 -0.48428 16 7 3 0 0 0 0.24981 1 35859 35859 29.437 4.5556 1 1813400 22778 8252 15478 15769 26846 26846 0.1263225223142399 IILEKKPTF 9 Unmodified _IILEKKPTF_ 0 0 0 nc|ENSG00000140876|P0C024-2|NUDT7;ENST00000564085.5_1_16:77769737-77775844:+|nuORF;ENSG00000140876|ENST00000268533|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.5619812011719 3 363.561987 1087.66413 0.093389 3.3953E-05 -0.20798 -7.5614E-05 -0.11459 -4.1661E-05 363.56186370209343 38.66 0.20134 38.671 38.578 38.779 0.011452 13 9 2 0 0 0 0.13639 1 20581 20581 29.437 5.6474 1 3002800 22779 5279 15479 15770 26847 26847 0.12380650067939314 IILEKKPTF 9 Unmodified _IILEKKPTF_ 0 0 0 nc|ENSG00000140876|P0C024-2|NUDT7;ENST00000564085.5_1_16:77769737-77775844:+|nuORF;ENSG00000140876|ENST00000268533|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 363.561987 1087.66413 -0.036333 -1.3209E-05 0.48684 0.000177 0.45051 0.00016379 363.56201747580707 39.111 0.1418 38.824 38.719 38.861 -0.28687 0.019484 -1.8542E-05 NaN 29.437 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1735900 22780 5279 15479 15770 0.12380650067939314 IILEKKPTF 9 Unmodified _IILEKKPTF_ 0 0 0 nc|ENSG00000140876|P0C024-2|NUDT7;ENST00000564085.5_1_16:77769737-77775844:+|nuORF;ENSG00000140876|ENST00000268533|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 nc|ENSG00000140876|P0C024-2|NUDT7 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 363.561987 1087.66413 1.3355 0.00048555 0.87781 0.00031914 2.2133 0.00080469 363.5623109046855 43.682 0.34089 38.917 38.709 39.05 -4.7648 0.11333 0.00040788 NaN 29.437 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 10348000 22781 5279 15479 15770 0.12380650067939314 IILGNGSV 8 Unmodified _IILGNGSV_ 0 0 0 REV__ENSG00000198674|ENST00000307002|OR10G6 REV__ENSG00000198674|ENST00000307002|OR10G6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.7331237792969 2 386.731803 771.449054 NaN NaN NaN NaN NaN NaN NaN 32.123 1 32.153 31.653 32.653 0.029743 0 0 0 0.97444 1 16855 16855 2.5775 0 1 + 22782 24036 15480 15771 26848 26848 0.05418728323013511 IILYFTKVE 9 Unmodified _IILYFTKVE_ 0 0 0 nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3 nc|ENSG00000183780|Q8IY50|SLC35F3 nc|ENSG00000183780|Q8IY50|SLC35F3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8892517089844 3 375.889992 1124.64815 0.59889 0.00022512 0.012335 4.6365E-06 0.61122 0.00022975 375.8891465998106 41.38 0.28445 36.772 36.639 36.923 -4.6079 27 18 2 0 0 0 0.37578 1 24831 24831 13.615 0.74226 1 13202000 22783 9196 15481 15772 26849 26849 0.09080943831054356 IIMEEVVKL 9 Oxidation (M) _IIM(Oxidation (M))EEVVKL_ IIM(1)EEVVKL IIM(52)EEVVKL 0 0 1 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3135986328125 2 545.314843 1088.61513 0.60666 0.00033082 -2.6498 -0.001445 -2.0431 -0.0011142 545.3126811960374 53.848 0.28376 53.848 53.685 53.968 0 39 12 4 0 0 0 0.036857 1 29832 29832 51.63 9.6743 1 13986000 22784 7678 15482 15773 26850 26850 1311 0.07436993716692086 IIMEEVVKL 9 Oxidation (M) _IIM(Oxidation (M))EEVVKL_ IIM(1)EEVVKL IIM(93)EEVVKL 0 0 1 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3161010742188 2 545.314843 1088.61513 -0.045969 -2.5068E-05 0.03688 2.0111E-05 -0.0090887 -4.9562E-06 545.3149681035466 54.318 0.26128 53.851 53.687 53.948 -0.46664 28 13 3 0 0 0 0.0082475 1 29403 29403 92.653 13.057 1 5495100 22785 7678 15482 15773 26851 26851 1311 0.07436993716692086 IIMETVPQL 9 Unmodified _IIMETVPQL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.3284912109375 2 522.293911 1042.57327 1.1357 0.00059318 2.7658 0.0014446 3.9015 0.0020378 522.2954661679212 81.69 0.27574 75.514 75.343 75.618 -6.1757 24 15 2 0 0 0 0.13712 1 53606 53606 30.225 12.09 1 10741000 22786 3233 15483 15774 26852 26852 0.053684380281538324 IIMMRTAW 8 Unmodified _IIMMRTAW_ 0 0 0 ENSG00000152611|ENST00000651391|CAPSL ENSG00000152611|ENST00000651391|CAPSL ENSG00000152611|ENST00000651391|CAPSL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.2353210449219 2 511.269716 1020.52488 0.76092 0.00038903 -2.8447 -0.0014544 -2.0838 -0.0010654 511.2682273699588 38.141 0.51124 33.772 33.581 34.092 -4.3689 48 30 2 0 0 0 8.7369 1 22443 22443 12.532 4.6214 1 33396000 22787 6203 15484 15775 26853 26853 0.015436659072747716 IIMTSAQII 9 Unmodified _IIMTSAQII_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS AL20221201_MKP_PDAC_01 4 495.2884826660156 2 495.288628 988.562703 NaN NaN NaN NaN NaN NaN NaN 101.36 1 95.181 94.681 95.681 -6.1757 0 0 0 0.18911 1 67995 67995 32.117 8.9685 1 + 22788 22320 15485 15776 26854 26854 0.06796455373739718 IINGIIISV 9 Unmodified _IINGIIISV_ 0 0 0 nc|ENSG00000122986|Q96D96-2|HVCN1;nc|ENSG00000122986|Q96D96-4|HVCN1;nc|ENSG00000122986|Q96D96-3|HVCN1;ENSG00000122986|ENST00000242607|HVCN1 nc|ENSG00000122986|Q96D96-2|HVCN1 nc|ENSG00000122986|Q96D96-2|HVCN1 MSMS AL20221201_MKP_PDAC_01 4 471.3067321777344 2 471.305136 940.595718 NaN NaN NaN NaN NaN NaN NaN 101.68 1 95.508 95.008 96.008 -6.1757 0 0 0 0.17247 1 68246 68246 34.102 5.6156 1 22789 3675 15486 15777 26855 26855 0.12304405488112025 IINHPLSLL 9 Unmodified _IINHPLSLL_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3160095214844 2 510.316035 1018.61752 0.52524 0.00026804 -0.61956 -0.00031617 -0.094317 -4.8131E-05 510.3157282353102 74.811 0.45148 74.857 74.616 75.068 0.045959 58 20 4 0 0 0 0.038285 1 41190 41190 50.855 8.7605 1 26291000 + 22790 24515 15487 15778 26856 26856 0.1089521023668567 IINQSRSAI 9 Unmodified _IINQSRSAI_ 0 0 0 REV__ENSG00000145743|ENST00000542267|FBXL17 REV__ENSG00000145743|ENST00000542267|FBXL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.291259765625 2 501.290548 1000.56654 0.22573 0.00011315 0.54629 0.00027385 0.77201 0.000387 501.2905198714955 73.542 1.0454 73.586 73.05 74.096 0.043976 89 48 3 0 0 0 0.49272 1 40795 40795 7.9102 7.9102 1 3094700 + 22791 20793 15488 15779 26857 26857 0.06628261191792717 IIPFPGRVPGL 11 Unmodified _IIPFPGRVPGL_ 0 0 0 REV__CON__P02666 REV__CON__P02666 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2423400878906 3 389.241248 1164.70191 0.31625 0.0001231 0.86547 0.00033688 1.1817 0.00045997 389.24140916898233 40.261 0.29595 40.266 40.128 40.424 0.0050545 19 13 2 0 0 0 0.71503 1 21455 21455 2.8433 0.75728 1 2802100 + + 22792 16840 15489 15780 26858 26858 0.12615161053417978 IIQHKKKF 8 Unmodified _IIQHKKKF_ 0 0 0 REV__ENSG00000122970|ENST00000242591|IFT81 REV__ENSG00000122970|ENST00000242591|IFT81 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3082885742188 2 521.332019 1040.64948 0.2406 0.00012543 3.0464 0.0015882 3.287 0.0017136 521.3340071589781 73.871 0.20541 73.915 73.822 74.028 0.043983 12 9 2 0 0 0 8.7369 1 40716 40716 14.582 2.9414 1 1758600 + 22793 19365 15490 15781 26859 26859 0.13078622710463605 IIQHQILY 8 Unmodified _IIQHQILY_ 0 0 0 REV__ENSG00000176222|ENST00000587539|ZNF404 REV__ENSG00000176222|ENST00000587539|ZNF404 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.810302734375 2 514.300384 1026.58622 0.65667 0.00033773 0.054724 2.8145E-05 0.7114 0.00036587 514.2996108629761 82.771 0.47121 76.595 76.438 76.91 -6.1757 34 26 2 0 0 0 8.7369 1 54305 54305 14.582 0 1 12473000 + 22794 22918 15491 15782 26860 26860 0.073986372025729 IIQTAVDQFVR 11 Unmodified _IIQTAVDQFVR_ 0 0 0 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3663330078125 2 645.364244 1288.71394 3.5189 0.002271 -3.6957 -0.0023851 -0.17684 -0.00011413 645.361972082633 97.804 0.88768 97.786 97.604 98.491 -0.018188 101 32 5 0 0 0 0.16973 1 54394 54394 34.402 13.948 1 18243000 22795 4285 15492 15783 26861 26861 0.08112733005918926 IIRGNGTEL 9 Unmodified _IIRGNGTEL_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7798461914062 2 486.777274 971.539994 -0.5156 -0.00025098 2.7056 0.001317 2.19 0.001066 486.77848187008937 27.584 0.15027 27.584 27.488 27.638 0 15 6 3 0 0 0 0.11784 1 14210 14210 31.268 4.3847 1 2316200 22796 6463 15493 15784 26862 26862 0.053085723004642205 IIRIPLWLML 10 Unmodified _IIRIPLWLML_ 0 0 0 REV__ENSG00000145495|ENST00000274140|MARCHF6 REV__ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2702331542969 3 423.27015 1266.78862 0.80055 0.00033885 0.54892 0.00023234 1.3495 0.00057119 423.2703549911046 22.444 0.23746 19.665 19.554 19.792 -2.7784 21 12 2 0 0 0 0.69126 1 12075 12075 3.8763 1.033 1 3465800 + 22797 20777 15494 15785 26863 26863 0.16589824283619237 IISALLVPP 9 Unmodified _IISALLVPP_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.8030395507812 2 461.802229 921.589904 0.39598 0.00018286 1.3662 0.00063091 1.7622 0.00081378 461.80284575961383 61.538 0.33588 61.506 61.355 61.691 -0.032787 33 16 3 0 0 0 0.41742 1 33599 33599 11.64 0 1 8012500 22798 1392 15495 15786 26864 26864 0.12597306976419986 IISDLVPLD 9 Unmodified _IISDLVPLD_ 0 0 0 REV__ENSG00000167910|ENST00000301645|CYP7A1 REV__ENSG00000167910|ENST00000301645|CYP7A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7844848632812 2 492.784233 983.553913 0.85097 0.00041935 -0.61145 -0.00030131 0.23952 0.00011803 492.78419272238983 77.905 0.48901 71.73 71.376 71.865 -6.1757 35 27 2 0 0 0 0.052168 1 50906 50906 44.407 8.3628 1 9725200 + 22799 22263 15496 15787 26865 26865 0.06147805008902196 IISEGRPTI 9 Unmodified _IISEGRPTI_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2874145507812 2 493.287474 984.560395 -0.45631 -0.00022509 0.56889 0.00028062 0.11258 5.5532E-05 493.2877220275276 34.974 0.26424 34.974 34.846 35.11 0 18 13 2 0 0 0 0.18144 1 18479 18479 24.991 24.991 1 2290600 22800 1987 15497 15788 26866 26866 0.06749742960300864 IISEGRPTI 9 Unmodified _IISEGRPTI_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2875671386719 2 493.287474 984.560395 -0.14417 -7.1118E-05 1.0264 0.00050633 0.88227 0.00043521 493.2879263427044 35.03 0.35511 34.808 34.646 35.001 -0.2224 38 15 3 0 0 0 0.18144 1 18412 18412 24.991 3.454 1 4932500 22801 1987 15497 15788 26867 26867 0.06749742960300864 IISEGRPTI 9 Unmodified _IISEGRPTI_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2873840332031 2 493.287474 984.560395 NaN NaN NaN NaN NaN NaN NaN 34.83 1 34.857 34.357 35.357 0.027401 0 0 0 0.49196 1 18383 18383 16.149 0 1 22802 1987 15497 15788 26868 26868 0.06749742960300864 IISEPHRFA 9 Unmodified _IISEPHRFA_ 0 0 0 REV__ENSG00000237765|ENST00000422728|FAM200B REV__ENSG00000237765|ENST00000422728|FAM200B MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7726440429688 2 535.293091 1068.57163 0.96216 0.00051504 0.72684 0.00038907 1.689 0.00090411 535.2931746509295 101.26 0.16048 95.088 95.032 95.192 -6.1757 14 9 3 0 0 0 0.30202 1 67895 67895 24.674 10.092 1 44992000 + 22803 24435 15498 15789 26869 26869 0.04008565054414248 IISGLWSLL 9 Unmodified _IISGLWSLL_ 0 0 0 REV__ENSG00000024048|ENST00000372901|UBR2 REV__ENSG00000024048|ENST00000372901|UBR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7794494628906 2 501.305136 1000.59572 1.1983 0.00060069 2.3579 0.001182 3.5562 0.0017827 501.30691958843016 87.198 0.61822 81.022 80.528 81.146 -6.1757 53 33 2 0 0 0 0.1474 1 57526 57526 28.487 3.813 1 13802000 + 22804 17125 15499 15790 26870 26870 0.09544405488099983 IISIIPLLF 9 Unmodified _IISIIPLLF_ 0 0 0 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.84228515625 2 514.841354 1027.66815 1.5076 0.00077616 -1.1774 -0.0006062 0.33012 0.00016996 514.8411244560921 103.13 0.17353 96.951 96.867 97.04 -6.1757 103 47 5 0 0 0 0.0081063 1 69156 69156 93.883 0 1 169440000 22805 10185 15500 15791 26871 26871 0.15542739561647068 IISMSALNF 9 Unmodified _IISMSALNF_ 0 0 0 ENST00000505383.1_1_5:53450329-53606402:-|nuORF ENST00000505383.1_1_5:53450329-53606402:-|nuORF ENST00000505383.1_1_5:53450329-53606402:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7901306152344 2 498.265153 994.515753 0.59017 0.00029406 -1.6962 -0.00084518 -1.1061 -0.00055112 498.2637774877879 68.235 0.57433 68.26 68.088 68.662 0.025146 49 28 3 0 0 0 0.16785 1 37659 37659 23.148 6.2061 1 1530100 22806 14513 15501 15792 26872 26872 0.018275958226013245 IISMSRPVVI 10 Unmodified _IISMSRPVVI_ 0 0 0 ENST00000418775.1_1_X:51139469-51141200:+|nuORF ENST00000418775.1_1_X:51139469-51141200:+|nuORF ENST00000418775.1_1_X:51139469-51141200:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.2014465332031 3 372.22661 1113.658 1.7478 0.00065057 4.292 0.0015976 6.0397 0.0022481 372.22779834473056 40.813 0.28789 36.283 36.13 36.418 -4.5294 26 17 2 0 0 0 0.23057 1 24319 24319 7.9454 1.7536 1 21670000 22807 13074 15502 15793 26873 26873 0.10571808564782259 IISSDRDLL 9 Unmodified _IISSDRDLL_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;ENST00000457831.1_1_X:149400805-149400952:-|nuORF ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2901000976562 2 516.290214 1030.56587 -0.046124 -2.3813E-05 0.15432 7.9676E-05 0.1082 5.5863E-05 516.2903588342153 45.233 0.19459 45.233 45.075 45.269 0 15 9 2 0 0 0 0.076472 1 24620 24620 38.615 8.3899 1 5430200 22808 9816 15503 15794 26874 26874 0.051814217520814054 IITDYSSTEF 10 Unmodified _IITDYSSTEF_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5200500488281 3 392.520405 1174.53938 0.13145 5.1598E-05 -0.43273 -0.00016985 -0.30127 -0.00011826 392.52022633193803 39.163 0.23913 39.174 39.042 39.281 0.011456 17 10 2 0 0 0 0.69377 1 20879 20879 1.7423 0 1 753360 + 22809 22004 15504 15795 26875 26875 -0.04090311929894597 IITIFIYF 8 Unmodified _IITIFIYF_ 0 0 0 REV__ENSG00000065308|ENST00000182527|TRAM2 REV__ENSG00000065308|ENST00000182527|TRAM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3048095703125 2 515.304604 1028.59466 NaN NaN NaN NaN NaN NaN NaN 96.522 1 96.217 95.717 96.717 -0.30472 0 0 0 0.97444 1 52712 52712 2.8892 0 1 + 22810 17372 15505 15796 26876 26876 0.08150191119170813 IITMLPTSI 9 Unmodified _IITMLPTSI_ 0 0 0 ENST00000428288.2_1_7:27565835-27702463:-|nuORF;ENSG00000106049|ENST00000265395|HIBADH ENST00000428288.2_1_7:27565835-27702463:-|nuORF ENST00000428288.2_1_7:27565835-27702463:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 988.5748901367188 1 988.574731 987.567454 1.1612 0.0011479 1.9742 0.0019517 3.1354 0.0030996 988.5779545477874 100.25 0.19022 94.075 93.996 94.187 -6.1757 18 11 2 0 0 0 0.06187 1 66971 66971 42.095 3.9434 1 25360000 22811 13210 15506 15797 26877 26877 0.07317339516498578 IITPIHEQW 9 Unmodified _IITPIHEQW_ 0 0 0 ENSG00000125818|ENST00000335877|PSMF1;ENST00000484891.1_1_20:1115545-1145721:+|nuORF ENSG00000125818|ENST00000335877|PSMF1 ENSG00000125818|ENST00000335877|PSMF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8114013671875 2 568.808574 1135.60259 0.64069 0.00036443 2.4834 0.0014126 3.1241 0.001777 568.8100627187017 55.5 0.18567 55.022 54.926 55.112 -0.47798 19 8 4 0 0 0 0.25681 1 30134 30134 19.257 3.4098 1 1437800 22812 3888 15507 15798 26878 26878 0.04021718368676375 IIVHHSDAK 9 Unmodified _IIVHHSDAK_ 0 0 0 REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2843017578125 2 510.285266 1018.55598 -0.66978 -0.00034178 -0.56011 -0.00028582 -1.2299 -0.0006276 510.28491982467733 56.63 0.29738 56.145 56.032 56.329 -0.48554 32 17 3 0 0 0 0.32871 1 30753 30753 15.847 6.4997 1 6425600 + 22813 26161 15508 15799 26879 26879 0.04744278537373248 IIVHHSDAK 9 Unmodified _IIVHHSDAK_ 0 0 0 REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 510.285266 1018.55598 -0.66978 -0.00034178 -0.56011 -0.00028582 -1.2299 -0.0006276 510.28491982467733 56.63 0.29738 56.145 56.032 56.329 -0.48554 -0.018662 -0.00015618 NaN 15.847 32 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6425600 + 22814 26161 15508 15799 0.04744278537373248 IIVHHSDAK 9 Unmodified _IIVHHSDAK_ 0 0 0 REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF REV__ENST00000373791.7_1_1:29520513-29520624:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 510.285266 1018.55598 0.024833 1.2672E-05 -0.14666 -7.4838E-05 -0.12183 -6.2166E-05 510.28505289020893 56.251 0.22458 56.182 56.096 56.32 -0.068737 0.018662 0.00026578 NaN 15.847 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3214100 + 22815 26161 15508 15799 0.04744278537373248 IIVIDVRKLC 10 Unmodified _IIVIDVRKLC_ 0 0 0 ENST00000457177.5_1_19:58057843-58058188:-|nuORF ENST00000457177.5_1_19:58057843-58058188:-|nuORF ENST00000457177.5_1_19:58057843-58058188:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2864379882812 2 586.365201 1170.71585 NaN NaN NaN NaN NaN NaN NaN 63.263 1 62.777 62.277 63.277 -0.48617 0 0 0 0.90096 1 34500 34500 7.9102 0 1 22816 13607 15509 15800 26880 26880 0.1373207049020948 IIVIIIHPGK 10 Unmodified _IIVIIIHPGK_ 0 0 0 nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8204956054688 2 551.870977 1101.7274 -0.57303 -0.00031624 -3.5493 -0.0019587 -4.1223 -0.002275 551.8694927571212 103.59 0.28899 103.54 103.38 103.67 -0.047928 15 11 2 0 0 0 0.72196 1 57501 57501 0.45834 0.45834 1 3213800 22817 1265 15510 15801 26881 26881 0.18060635575852757 IIVSARRR 8 Unmodified _IIVSARRR_ 0 0 0 REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF REV__ENST00000461597.1_1_1:156260048-156262795:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.621337890625 1 970.626858 969.619582 0.14946 0.00014507 -4.0305 -0.0039121 -3.8811 -0.0037671 970.6232101561579 99.696 0.18898 93.521 93.399 93.588 -6.1757 23 11 3 0 0 0 0.77907 1 66497 66497 10.183 2.2732 1 77119000 + 22818 27321 15511 15802 26882 26882 0.13355683765132653 IIWFMDNYTI 10 Unmodified _IIWFMDNYTI_ 0 0 0 ENSG00000099282|ENST00000373290|TSPAN15 ENSG00000099282|ENST00000373290|TSPAN15 ENSG00000099282|ENST00000373290|TSPAN15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.32373046875 2 658.323199 1314.63185 NaN NaN NaN NaN NaN NaN NaN 102.39 1 102.27 101.77 102.77 -0.11613 0 0 0 0.99248 1 55864 55864 1.4819 0 1 22819 1691 15512 15803 26883 26883 -0.012885053973832328 IIYIRKKKS 9 Unmodified _IIYIRKKKS_ 0 0 0 ENSG00000100483|ENST00000395860|VCPKMT ENSG00000100483|ENST00000395860|VCPKMT ENSG00000100483|ENST00000395860|VCPKMT MSMS AL20221201_MKP_PDAC_01 4 574.8804321289062 2 574.879333 1147.74411 NaN NaN NaN NaN NaN NaN NaN 104.32 1 98.142 97.642 98.642 -6.1757 0 0 0 0.85737 1 69871 69871 0.6015 0.076735 1 22820 1834 15513 15804 26884 26884 0.17615136461790826 IIYIYIIY 8 Unmodified _IIYIYIIY_ 0 0 0 REV__ENST00000258796.11_1_7:2704096-2704171:+|nuORF REV__ENST00000258796.11_1_7:2704096-2704171:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3185424804688 2 537.317712 1072.62087 -0.17253 -9.2702E-05 1.8854 0.0010131 1.7129 0.00092037 537.3189170024666 69.537 0.27791 69.058 68.925 69.203 -0.47903 25 11 3 0 0 0 0.61999 1 37998 37998 24.21 0 1 1578200 + 22821 24948 15514 15805 26885 26885 0.08746460290672076 IIYLFWSI 8 Unmodified _IIYLFWSI_ 0 0 0 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.281494140625 2 527.802229 1053.5899 0.33045 0.00017441 -1.9278 -0.0010175 -1.5973 -0.00084307 528.3020799648572 52.031 0.27512 51.973 51.751 52.027 -0.058918 14 12 2 0 0 0 8.7369 1 28106 28106 10.183 0.83596 1 801800 + 22822 24367 15515 15806 26886 26886 0.06525306976436696 IIYLFWSI 8 Unmodified _IIYLFWSI_ 0 0 0 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 REV__nc|ENSG00000221955|A0AV02-4|SLC12A8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.802229 1053.5899 0.40839 0.00021555 -2.0742 -0.0010948 -1.6658 -0.00087921 528.3027412639291 52.518 0.095673 52.084 52.044 52.139 -0.43367 0.055795 -0.00010862 NaN 10.183 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 571820 + 22823 24367 15515 15806 0.06525306976436696 IIYNPVIPF 9 Unmodified _IIYNPVIPF_ 0 0 0 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000532826.5_1_1:236689310-236702461:+|nuORF;ENST00000366583.6_1_1:236689310-236706138:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3140258789062 2 538.312961 1074.61137 0.28467 0.00015324 1.3469 0.00072505 1.6316 0.00087829 538.3133374432001 93.657 0.41903 93.2 92.957 93.376 -0.45741 45 18 3 0 0 0 0.5029 1 51117 51117 7.2892 0 1 924120 22824 3270 15516 15807 26887 26887 0.07704692005131619 IIYYPFPF 8 Unmodified _IIYYPFPF_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3321533203125 2 530.281129 1058.54771 0.077136 4.0904E-05 -0.52384 -0.00027778 -0.4467 -0.00023688 530.2809672349243 72.687 0.1904 72.729 72.571 72.761 0.041725 15 8 2 0 0 0 8.7369 1 39988 39988 6.3541 0 1 4560700 + 22825 18791 15517 15808 26888 26888 0.02077331568034424 IKAAVEDP 8 Unmodified _IKAAVEDP_ 0 0 0 nc|ENSG00000119689|P36957-2|DLST;ENSG00000119689|ENST00000334220|DLST nc|ENSG00000119689|P36957-2|DLST nc|ENSG00000119689|P36957-2|DLST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.4613037109375 1 842.46181 841.454533 -0.20602 -0.00017357 -0.25346 -0.00021353 -0.45949 -0.0003871 842.4617132555433 51.833 0.26346 51.833 51.689 51.953 0 20 11 2 0 0 0 0.21583 1 28721 28721 67.344 7.27 1 7760900 22826 3458 15518 15809 26889 26889 0.027464071148074254 IKALRKILFKL 11 Unmodified _IKALRKILFKL_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.9676513671875 2 671.968483 1341.92241 NaN NaN NaN NaN NaN NaN NaN 14.436 1 14.444 13.944 14.944 0.0073986 0 0 0 0.9435 1 7156 7156 0 0 1 + 22827 18791 15519 15810 26890 26890 0.26512806380833354 IKCFYIDTQNV 11 Unmodified _IKCFYIDTQNV_ 0 0 0 REV__ENSG00000178562|ENST00000324106|CD28 REV__ENSG00000178562|ENST00000324106|CD28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.5600280761719 3 448.560317 1342.65912 -0.62936 -0.00028231 0.31145 0.0001397 -0.31792 -0.0001426 448.5605652872275 17.016 0.098236 17.017 16.963 17.061 0.0010529 65 25 3 0 0 0 0.6747 1 8421 8421 3.3557 0.92094 1 3838000 + 22828 23049 15520 15811 26891 26891 0.0014997814300841128 IKCTFHSVVHH 11 Unmodified _IKCTFHSVVHH_ 0 0 0 REV__ENSG00000168828|ENST00000377981|OR13J1 REV__ENSG00000168828|ENST00000377981|OR13J1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8434448242188 2 654.337507 1306.66046 1.0818 0.00070786 2.7506 0.0017998 3.8324 0.0025077 654.8416961680188 96.894 0.35432 90.719 90.523 90.877 -6.1757 46 20 3 0 0 0 0.5229 1 64162 64162 15.248 1.3424 1 39288000 + 22829 22349 15521 15812 26892 26892 0.019396570224444076 IKDCYREL 8 Unmodified _IKDCYREL_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2650146484375 2 520.265684 1038.51682 0.41248 0.0002146 -0.97364 -0.00050655 -0.56116 -0.00029195 520.2651858992904 85.3 0.52164 84.798 84.434 84.955 -0.5015 63 36 2 0 0 0 0.38756 1 46654 46654 45.7 3.86 1 4874800 + 22830 18320 15522 15813 26893 26893 -0.0009018980849759828 IKDCYREL 8 Unmodified _IKDCYREL_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2647705078125 2 520.265684 1038.51682 -0.19914 -0.00010361 0.5844 0.00030404 0.38526 0.00020044 520.2659805412435 84.575 0.5573 84.638 84.257 84.814 0.063179 26 24 2 0 0 0 0.31379 1 46667 46667 53.833 11.993 1 16486000 + 22831 18320 15522 15813 26894 26894 -0.0009018980849759828 IKDLFTCTIK 10 Unmodified _IKDLFTCTIK_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.334228515625 2 591.333567 1180.65258 0.29704 0.00017565 -1.6223 -0.00095933 -1.3253 -0.00078368 591.3329443557675 56.691 0.16036 56.622 56.559 56.72 -0.068737 15 7 3 0 0 0 0.36296 1 30845 30845 23.79 0 1 3145500 22832 2794 15523 15814 26895 26895 0.06948084982286673 IKEESSYCLY 10 Unmodified _IKEESSYCLY_ 0 0 0 ENSG00000253293|ENST00000283921|HOXA10 ENSG00000253293|ENST00000283921|HOXA10 ENSG00000253293|ENST00000283921|HOXA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.1960754394531 3 412.193523 1233.55874 NaN NaN NaN NaN NaN NaN NaN 73.376 1 72.9 72.4 73.4 -0.47588 0 0 0 0.99091 1 40154 40154 0.69767 0.07084 1 22833 10761 15524 15815 26896 26896 -0.04869678910631592 IKEKLKLSKK 10 Unmodified _IKEKLKLSKK_ 0 0 0 ENSG00000183098|ENST00000377047|GPC6 ENSG00000183098|ENST00000377047|GPC6 ENSG00000183098|ENST00000377047|GPC6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 607.913330078125 2 607.913373 1213.81219 1.3187 0.00080165 -0.90887 -0.00055251 0.40982 0.00024913 607.9131918957036 106.13 0.030495 99.955 99.937 99.968 -6.1757 5 3 2 0 0 0 0.24012 1 71062 71062 0 0 1 1110000 22834 9117 15525 15816 26897 26897 0.21383961321748757 IKEKYCYIC 9 Unmodified _IKEKYCYIC_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B ENSG00000106526|ENST00000683684|ACTR3C ENSG00000106526|ENST00000683684|ACTR3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1922912597656 3 388.192689 1161.55624 0.56712 0.00022015 -1.0151 -0.00039405 -0.44797 -0.0001739 388.1922506287178 63.991 0.21649 63.506 63.458 63.675 -0.48512 16 10 2 0 0 0 0.51218 1 34913 34913 4.1895 1.1943 1 1922200 22835 2435 15526 15817 26898 26898 -0.018078058493074423 IKEKYCYIC 9 Unmodified _IKEKYCYIC_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B ENSG00000106526|ENST00000683684|ACTR3C ENSG00000106526|ENST00000683684|ACTR3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1926574707031 3 388.192689 1161.55624 0.63223 0.00024543 -0.35642 -0.00013836 0.27581 0.00010707 388.1924391937892 63.584 0.26631 63.574 63.453 63.719 -0.010529 23 12 2 0 0 0 0.51218 1 34819 34819 4.1895 0.60244 1 6750600 22836 2435 15526 15817 26899 26899 -0.018078058493074423 IKERLERPH 9 Unmodified _IKERLERPH_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3451538085938 2 589.343646 1176.67274 0.88082 0.00051911 0.82915 0.00048866 1.71 0.0010078 589.3442685038706 83.074 1.1116 83.136 82.27 83.382 0.061996 91 42 3 0 0 0 0.59532 1 45995 45995 1.6526 0.32309 1 8026200 + 22837 21725 15527 15818 26900 26900 0.09147016757128767 IKETGLGQPH 10 Unmodified _IKETGLGQPH_ 0 0 0 ENST00000392557.8_1_14:105676521-105676869:-|nuORF ENST00000392557.8_1_14:105676521-105676869:-|nuORF ENST00000392557.8_1_14:105676521-105676869:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1079.58447265625 1 1079.58438 1078.57711 0.75223 0.00081209 3.3433 0.0036094 4.0955 0.0044215 1079.5878379901685 51.211 0.51586 45.562 45.366 45.882 -5.649 44 31 2 0 0 0 0.52888 1 32389 32389 14.838 0 1 67778000 22838 12675 15528 15819 26901 26901 0.04096243846242942 IKFNETKAY 9 Unmodified _IKFNETKAY_ 0 0 0 REV__ENSG00000196664|ENST00000380659|TLR7 REV__ENSG00000196664|ENST00000380659|TLR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.298828125 2 557.300581 1112.58661 0.42526 0.000237 -2.5919 -0.0014445 -2.1667 -0.0012075 557.2990859792684 37.959 0.18264 37.959 37.846 38.028 0 15 8 2 0 0 0 0.21643 1 20238 20238 21.537 2.175 1 1854500 + 22839 23859 15529 15820 26902 26902 0.03482012131757983 IKFNRAKEI 9 Unmodified _IKFNRAKEI_ 0 0 0 REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF REV__ENST00000521362.1_1_5:159659088-159665663:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5609436035156 3 373.560869 1117.66078 1.1571 0.00043225 -0.11895 -4.4437E-05 1.0382 0.00038782 373.5609785376581 82.041 0.40825 75.865 75.657 76.066 -6.1757 31 22 2 0 0 0 0.069655 1 53845 53845 40.239 6.7943 1 11341000 + 22840 22456 15530 15821 26903 26903 0.10665400013931503 IKFRYIWICWF 11 Unmodified _IKFRYIWICWF_ 0 0 0 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 ENSG00000140323|ENST00000267889|DISP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.615966796875 3 525.616209 1573.8268 -0.31406 -0.00016507 -0.71668 -0.0003767 -1.0307 -0.00054177 525.6161859833295 85.999 0.60812 86.061 85.931 86.539 0.061646 86 38 3 0 0 0 0.65846 3 47906 47582;47760;47906 4.1166 1.6818 1 100310000 22841 5223 15531 15822 26904;26905;26906 26906 0.06283710198295012 IKFYLCLVVVI 11 Unmodified _IKFYLCLVVVI_ 0 0 0 REV__ENSG00000213185|ENST00000368898|FAM24B REV__ENSG00000213185|ENST00000368898|FAM24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.6044921875 3 437.269927 1308.78795 -0.30547 -0.00013357 -0.10044 -4.3918E-05 -0.40591 -0.00017749 437.26988120929065 19.679 0.16547 19.679 19.601 19.766 0 59 28 3 0 0 0 0.72981 1 9827 9827 1.4551 0 1 1444700 + 22842 24277 15532 15823 26907 26907 0.14590984843880506 IKGDFETIKI 10 Unmodified _IKGDFETIKI_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5609436035156 3 388.560535 1162.65977 1.5923 0.00061869 -0.088454 -3.437E-05 1.5038 0.00058432 388.5605818207127 54.013 0.23498 48.148 48.048 48.283 -5.8653 20 12 2 0 0 0 0.36277 1 34231 34231 23.801 7.2352 1 13847000 22843 16367 15533 15824 26908 26908 0.0849514085437022 IKGTYASEEV 10 Unmodified _IKGTYASEEV_ 0 0 0 ENSG00000155495|ENST00000285879|MAGEC1;nc|ENSG00000155495|O60732-2|MAGEC1 ENSG00000155495|ENST00000285879|MAGEC1 ENSG00000155495|ENST00000285879|MAGEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7808837890625 2 548.779679 1095.5448 -0.56012 -0.00030738 3.5203 0.0019318 2.9601 0.0016245 548.7801928189342 30.332 0.24118 30.332 30.181 30.422 0 25 11 4 0 0 0 0.44373 1 15732 15732 19.257 3.4098 1 4793400 22844 6390 15534 15825 26909 26909 0.0008541165257156536 IKHSRPGP 8 Unmodified _IKHSRPGP_ 0 0 0 nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.12|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.2631225585938 2 446.261594 890.508634 0.083544 3.7282E-05 2.4267 0.0010829 2.5102 0.0011202 446.26259422372686 41.687 0.18975 41.685 41.553 41.743 -0.0017929 12 8 2 0 0 0 0.52622 1 22287 22287 32.305 0 1 8145400 22845 2209 15535 15826 26910 26910 0.059000440570343926 IKHTNLDP 8 Unmodified _IKHTNLDP_ 0 0 0 ENST00000596769.1_1_19:53510963-53514048:+|nuORF ENST00000596769.1_1_19:53510963-53514048:+|nuORF ENST00000596769.1_1_19:53510963-53514048:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.2584533691406 2 469.258717 936.50288 NaN NaN NaN NaN NaN NaN NaN 18.084 1 15.462 14.962 15.962 -2.6215 0 0 0 0.95973 1 9504 9504 8.5933 0 1 22846 15769 15536 15827 26911 26911 0.03208900754691513 IKIQFLFF 8 Unmodified _IKIQFLFF_ 0 0 0 REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF REV__ENST00000477629.1_1_3:58135593-58136214:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.320068359375 2 528.318046 1054.62154 NaN NaN NaN NaN NaN NaN NaN 19.85 1 17.194 16.694 17.694 -2.6564 0 0 0 0.97444 1 10545 10545 2.5775 0 1 + 22847 27616 15537 15828 26912 26912 0.09641299730378705 IKITEFDGKI 10 Unmodified _IKITEFDGKI_ 0 0 0 REV__ENSG00000168078|ENST00000301905|PBK REV__ENSG00000168078|ENST00000301905|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5617980957031 3 388.560535 1162.65977 0.29488 0.00011458 -0.29471 -0.00011451 0.00017257 6.7052E-08 388.5604122387942 48.309 0.31692 48.271 48.083 48.4 -0.038643 46 15 4 0 0 0 0.47059 2 26005 26005;26107 17.863 3.4625 1 18125000 + 22848 22287 15538 15829 26913;26914 26913 0.0849514085437022 IKITEFDGKI 10 Unmodified _IKITEFDGKI_ 0 0 0 REV__ENSG00000168078|ENST00000301905|PBK REV__ENSG00000168078|ENST00000301905|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3385009765625 2 582.337164 1162.65977 0.86775 0.00050532 -0.79383 -0.00046228 0.073922 4.3048E-05 582.3366649378952 48.316 0.29791 48.277 48.102 48.4 -0.038643 47 14 4 0 0 0 0.091475 1 26006 26006 55.235 0 1 22400000 + 22849 22287 15538 15829 26915 26915 0.0849514085437022 IKKFFLHIF 9 Unmodified _IKKFFLHIF_ 0 0 0 ENST00000511075.5_1_4:39457912-39460059:-|nuORF ENST00000511075.5_1_4:39457912-39460059:-|nuORF ENST00000511075.5_1_4:39457912-39460059:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.247314453125 3 398.246222 1191.71684 1.665 0.00066308 -0.016059 -6.3955E-06 1.6489 0.00065668 398.2462180191433 98.298 0.2388 92.122 92.014 92.253 -6.1757 45 15 4 0 0 0 0.2324 1 65161 65161 20.415 8.9198 1 68074000 22850 14602 15539 15830 26916 26916 0.12864652921416564 IKKGDFRKI 9 Unmodified _IKKGDFRKI_ 0 0 0 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.9016418457031 3 368.901114 1103.68151 0.045233 1.6686E-05 1.2994 0.00047936 1.3446 0.00049604 368.90152715208 19.217 0.19707 19.225 19.122 19.319 0.0078487 35 12 3 0 0 0 0.13639 1 9758 9758 29.437 0.35557 1 3418700 + 22851 18574 15540 15831 26917 26917 0.13381990393600063 IKKGDFRKI 9 Unmodified _IKKGDFRKI_ 0 0 0 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.9019775390625 3 368.901114 1103.68151 1.597 0.00058914 0.11505 4.2444E-05 1.7121 0.00063158 368.90109622178284 21.888 0.4383 19.153 18.955 19.394 -2.7348 78 24 5 0 0 0 0.091924 1 11700 11700 34.932 7.3033 1 31436000 + 22852 18574 15540 15831 26918 26918 0.13381990393600063 IKKGDFRKI 9 Unmodified _IKKGDFRKI_ 0 0 0 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 368.901114 1103.68151 0.045233 1.6686E-05 1.2994 0.00047936 1.3446 0.00049604 368.90152715208 19.217 0.19707 19.225 19.122 19.319 0.0078487 0.035945 0.0007153 NaN 34.932 35 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3418700 + 22853 18574 15540 15831 0.13381990393600063 IKKGDFRKI 9 Unmodified _IKKGDFRKI_ 0 0 0 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 REV__nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 368.901114 1103.68151 1.597 0.00058914 0.11505 4.2444E-05 1.7121 0.00063158 368.90109622178284 21.888 0.4383 19.153 18.955 19.394 -2.7348 -0.035945 -0.00059544 NaN 34.932 78 24 5 NaN NaN NaN NaN 0 NaN NaN 0 31436000 + 22854 18574 15540 15831 0.13381990393600063 IKKKKKLAKKE 11 Unmodified _IKKKKKLAKKE_ 0 0 0 REV__ENSG00000075856|ENST00000546815|SART3 REV__ENSG00000075856|ENST00000546815|SART3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.4686889648438 2 671.468847 1340.92314 NaN NaN NaN NaN NaN NaN NaN 17.138 1 17.143 16.643 17.643 0.0050564 0 0 0 0.9435 1 8631 8631 0 0 1 + 22855 17578 15541 15832 26919 26919 0.2663160102983966 IKKKKNTHTH 10 Unmodified _IKKKKNTHTH_ 0 0 0 ENST00000396355.5_1_16:15818941-15819124:+|nuORF ENST00000396355.5_1_16:15818941-15819124:+|nuORF ENST00000396355.5_1_16:15818941-15819124:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2517700195312 3 412.250806 1233.73059 0.34968 0.00014416 0.78969 0.00032555 1.1394 0.0004697 412.25113361306273 16.29 0.17828 13.733 13.656 13.835 -2.557 36 22 2 0 0 0 0.64183 1 8414 8414 8.9762 2.7844 1 3082300 22856 12791 15542 15833 26920 26920 0.12307278682555989 IKKLKGKYKD 10 Unmodified _IKKLKGKYKD_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8916015625 2 610.889898 1219.76524 1.5124 0.00092388 -0.86647 -0.00052932 0.64589 0.00039457 610.8894063323205 107.15 0.15178 100.98 100.93 101.08 -6.1757 37 27 2 0 0 0 0.71276 1 71692 71692 1.4819 1.0812 1 1756000 22857 824 15543 15834 26921 26921 0.1641510177064447 IKLCRIFYKRV 11 Unmodified _IKLCRIFYKRV_ 0 0 0 REV__ENST00000310421.4_1_8:67545353-67545431:-|nuORF REV__ENST00000310421.4_1_8:67545353-67545431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.4736938476562 4 360.473338 1437.86425 -0.57867 -0.0002086 1.2584 0.00045362 0.67972 0.00024502 360.72453128858615 18.531 0.14883 18.554 18.496 18.645 0.023106 56 24 3 0 0 0 0.73114 1 9302 9302 1.3296 0.11481 1 1372300 + 22858 25414 15544 15835 26922 26922 0.16282801463853502 IKLLFTYKKVT 11 Unmodified _IKLLFTYKKVT_ 0 0 0 REV__ENST00000220913.9_1_8:141525825-141525963:+|nuORF REV__ENST00000220913.9_1_8:141525825-141525963:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.1174926757812 2 677.428856 1352.84316 NaN NaN NaN NaN NaN NaN NaN 104.17 1 104.12 103.62 104.62 -0.048737 0 0 0 0.9435 1 57836 57836 0 0 1 + 22859 24760 15545 15836 26923 26923 0.18085114636005528 IKLNEYVVY 9 Unmodified _IKLNEYVVY_ 0 0 0 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8806457519531 3 380.881497 1139.62266 0.3574 0.00013613 -2.0342 -0.0007748 -1.6768 -0.00063867 380.88086625669706 25.422 0.2384 22.539 22.406 22.644 -2.8831 32 12 3 0 0 0 0.52844 1 13905 13905 5.7319 1.203 1 6234700 + 22860 20941 15546 15837 26924 26924 0.058434693086155676 IKLNEYVVY 9 Unmodified _IKLNEYVVY_ 0 0 0 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 380.881497 1139.62266 0.3574 0.00013613 -2.0342 -0.0007748 -1.6768 -0.00063867 380.88086625669706 25.422 0.2384 22.539 22.406 22.644 -2.8831 0.067259 0.00033173 NaN 5.7319 32 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6234700 + 22861 20941 15546 15837 0.058434693086155676 IKLSKETTE 9 Unmodified _IKLSKETTE_ 0 0 0 REV__CON__REFSEQ:XP_585019 REV__CON__REFSEQ:XP_585019 MSMS AL20221201_MKP_PDAC_01 4 350.2012939453125 3 350.201007 1047.58119 NaN NaN NaN NaN NaN NaN NaN 8.389 1 5.907 5.407 6.407 -2.482 0 0 0 0.85798 1 4236 4236 0.23584 0 1 + + 22862 16893 15547 15838 26925 26925 0.059302885493025315 IKLWKVALH 9 Unmodified _IKLWKVALH_ 0 0 0 nc|ENSG00000163950|Q14493-2|SLBP;ENSG00000163950|ENST00000489418|SLBP nc|ENSG00000163950|Q14493-2|SLBP nc|ENSG00000163950|Q14493-2|SLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9064636230469 3 369.906088 1106.69644 0.046585 1.7232E-05 1.5168 0.00056109 1.5634 0.00057832 369.9065094823299 37.284 0.33649 37.284 37.138 37.475 0 41 17 3 0 0 0 0.60664 1 19801 19801 0.96228 0.69326 1 15620000 22863 7105 15548 15839 26926 26926 0.14735482261608013 IKLWKVALH 9 Unmodified _IKLWKVALH_ 0 0 0 nc|ENSG00000163950|Q14493-2|SLBP;ENSG00000163950|ENST00000489418|SLBP nc|ENSG00000163950|Q14493-2|SLBP nc|ENSG00000163950|Q14493-2|SLBP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 369.906088 1106.69644 -0.1784 -6.5992E-05 2.3084 0.00085388 2.13 0.00078789 369.9068689977205 37.317 0.54122 37.339 37.195 37.736 0.021545 0.027257 0.00035335 NaN 0.96228 76 25 5 NaN NaN NaN NaN 0 NaN NaN 0 54096000 22864 7105 15548 15839 0.14735482261608013 IKNMYFSVEIQ 11 Unmodified _IKNMYFSVEIQ_ 0 0 0 REV__ENST00000475375.1_1_13:53010343-53024741:-|nuORF REV__ENST00000475375.1_1_13:53010343-53024741:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.8550415039062 2 686.352488 1370.69042 -0.01817 -1.2471E-05 1.342 0.00092108 1.3238 0.00090861 686.3536314756349 89.246 0.20705 89.246 89.076 89.284 0 13 8 2 0 0 0 0.69708 1 49352 49352 4.5289 0 1 503270 + 22865 27572 15549 15840 26927 26927 0.019905511770957673 IKNRTKIHK 9 Unmodified _IKNRTKIHK_ 0 0 0 nc|ENSG00000122390|Q9H7X0-3|NAA60;nc|ENSG00000122390|Q9H7X0-4|NAA60;nc|ENSG00000122390|Q9H7X0-5|NAA60;ENSG00000122390|ENST00000407558|NAA60;nc|ENSG00000122390|Q9H7X0-2|NAA60 nc|ENSG00000122390|Q9H7X0-3|NAA60 nc|ENSG00000122390|Q9H7X0-3|NAA60 MSMS AL20221201_MKP_PDAC_01 4 569.3402099609375 2 569.364382 1136.71421 NaN NaN NaN NaN NaN NaN NaN 106.54 1 100.36 99.864 100.86 -6.1757 0 0 0 0.85798 1 71310 71310 0.52476 0 1 22866 3635 15550 15841 26928 26928 0.15132197516436463 IKPLDRKLI 9 Unmodified _IKPLDRKLI_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.9128112792969 3 365.913131 1094.71756 -0.41551 -0.00015204 -0.35116 -0.0001285 -0.76668 -0.00028054 365.9130100725664 35.518 0.41224 35.295 35.107 35.519 -0.2224 37 18 3 0 0 0 0.070838 1 18558 18558 43.772 22.182 1 9100100 22867 7097 15551 15842 26929 26929 0.17399447570460325 IKPLSLHQR 9 Unmodified _IKPLSLHQR_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7 ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.56103515625 3 364.560981 1090.66111 0.79606 0.00029021 -0.22133 -8.0687E-05 0.57473 0.00020953 364.56088378679107 23.235 0.29721 20.457 20.346 20.644 -2.7784 57 28 3 0 0 0 0.13231 1 12546 12546 29.841 2.6173 1 12221000 22868 5088 15552 15843 26930 26930 0.11940819733786157 IKPQCTLH 8 Unmodified _IKPQCTLH_ 0 0 0 REV__ENSG00000186020|ENST00000591340|ZNF529 REV__ENSG00000186020|ENST00000591340|ZNF529 MSMS AL20221201_MKP_PDAC_01 4 470.2576293945312 2 470.257662 938.500772 NaN NaN NaN NaN NaN NaN NaN 19.868 1 17.212 16.712 17.712 -2.6564 0 0 0 0.60022 1 10555 10555 34.102 1.9855 1 + 22869 23546 15553 15844 26931 26931 0.02906148745239534 IKPQLAIHNI 10 Unmodified _IKPQLAIHNI_ 0 0 0 nc|ENSG00000164347|Q969S9-5|GFM2;nc|ENSG00000164347|Q969S9-4|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2 nc|ENSG00000164347|Q969S9-5|GFM2 nc|ENSG00000164347|Q969S9-5|GFM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.9051208496094 3 382.904636 1145.69208 1.8192 0.00069657 -0.31673 -0.00012128 1.5025 0.0005753 382.9045766147613 90.767 0.41465 84.591 84.34 84.755 -6.1757 42 24 2 0 0 0 0.67413 1 60035 60035 5.7834 0 1 18312000 22870 7186 15554 15845 26932 26932 0.1250597304801886 IKPYHHHL 8 Unmodified _IKPYHHHL_ 0 0 0 REV__ENST00000505708.5_1_5:54929596-54931433:-|nuORF REV__ENST00000505708.5_1_5:54929596-54931433:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7864990234375 2 522.790518 1043.56648 1.2644 0.00066104 0.84244 0.00044042 2.1069 0.0011015 522.791430858004 36.054 0.58876 31.862 31.493 32.082 -4.1928 97 36 4 0 0 0 0.77907 1 20847 20847 10.183 1.5901 1 64547000 + 22871 28072 15555 15846 26933 26933 0.046443059824468946 IKPYQFFRL 9 Unmodified _IKPYQFFRL_ 0 0 0 REV__ENST00000342992.10_3_2:179403377-179403708:-|nuORF REV__ENST00000342992.10_3_2:179403377-179403708:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3519287109375 2 606.350409 1210.68626 -0.16696 -0.00010124 1.8944 0.0011487 1.7275 0.0010475 606.3517660571558 24.738 0.20131 21.855 21.758 21.959 -2.8831 15 11 2 0 0 0 0.54816 1 13488 13488 7.2892 2.96 1 3626800 + 22872 25728 15556 15847 26934 26934 0.08934874536384996 IKQRAAKY 8 Unmodified _IKQRAAKY_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.6067199707031 2 489.298176 976.581799 0.69299 0.00033908 1.8551 0.00090772 2.5481 0.0012468 489.2997167992769 48.068 0.11591 48.029 47.967 48.083 -0.038643 8 5 2 0 0 0 8.7369 1 25923 25923 8.5933 2.8329 1 570100 22873 1813 15557 15848 26935 26935 0.09257172779643952 IKQRISLPIKF 11 Unmodified _IKQRISLPIKF_ 0 0 0 REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2521667480469 3 448.29049 1341.84964 1.1196 0.00050192 -0.1359 -6.0922E-05 0.98373 0.000441 448.2904180467318 50.692 0.11883 50.638 50.57 50.688 -0.053871 11 5 3 0 0 0 0.30587 1 27385 27385 1.2148 0 1 572410 + 22874 18572 15558 15849 26936 26936 0.19239052587408878 IKQYNKDKDRY 11 Unmodified _IKQYNKDKDRY_ 0 0 0 REV__ENST00000582669.1_1_17:28600488-28612498:-|nuORF REV__ENST00000582669.1_1_17:28600488-28612498:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.9295654296875 3 490.928169 1469.76268 0.78179 0.0003838 1.1858 0.00058212 1.9676 0.00096593 491.2624958506698 62.593 0.36834 62.105 61.915 62.284 -0.48764 49 17 4 0 0 0 0.69838 1 34107 34107 4.4062 0.28952 1 12517000 + 22875 18616 15559 15850 26937 26937 0.046586015750108345 IKRCQILE 8 Unmodified _IKRCQILE_ 0 0 0 nc|ENSG00000174842|Q92990-2|GLMN;ENSG00000174842|ENST00000370360|GLMN nc|ENSG00000174842|Q92990-2|GLMN nc|ENSG00000174842|Q92990-2|GLMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.791748046875 2 501.791869 1001.56919 0.28768 0.00014436 0.4604 0.00023103 0.74809 0.00037538 501.7919112387468 62.395 0.52054 62.362 62.22 62.741 -0.032787 40 27 2 0 0 0 0.52622 1 34091 34091 32.305 3.2239 1 16528000 22876 8463 15560 15851 26938 26938 0.06846393325099598 IKRDFLGF 8 Unmodified _IKRDFLGF_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2854919433594 2 498.287277 994.560001 NaN NaN NaN NaN NaN NaN NaN 94.688 1 94.267 93.767 94.767 -0.42044 0 0 0 0.97444 1 51728 51728 2.8892 0 1 22877 8400 15561 15852 26939 26939 0.06250368031078324 IKRGSVLKKH 10 Unmodified _IKRGSVLKKH_ 0 0 0 ENST00000282272.14_1_2:197852902-197853037:-|nuORF ENST00000282272.14_1_2:197852902-197853037:-|nuORF ENST00000282272.14_1_2:197852902-197853037:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2422180175781 3 389.25578 1164.74551 0.1494 5.8155E-05 -3.0206 -0.0011758 -2.8712 -0.0011176 389.25464426571307 39.068 0.19581 39.08 39.042 39.238 0.011456 10 8 2 0 0 0 0.24007 1 20872 20872 0.69767 0.07084 1 1201500 22878 11420 15562 15853 26940 26940 0.16972770550546556 IKRGSVLKKH 10 Unmodified _IKRGSVLKKH_ 0 0 0 ENST00000282272.14_1_2:197852902-197853037:-|nuORF ENST00000282272.14_1_2:197852902-197853037:-|nuORF ENST00000282272.14_1_2:197852902-197853037:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.25578 1164.74551 0.26146 0.00010177 -4.433 -0.0017256 -4.1716 -0.0016238 389.25403688959864 39.03 0.42149 39.03 38.88 39.302 0 -0.024968 -6.1417E-05 NaN 0.69767 53 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7938200 22879 11420 15562 15853 0.16972770550546556 IKRIWAAK 8 Unmodified _IKRIWAAK_ 0 0 0 REV__nc|ENSG00000171931|Q5XX13-4|FBXW10 REV__nc|ENSG00000171931|Q5XX13-4|FBXW10 MSMS AL20221201_MKP_PDAC_01 4 493.3185119628906 2 493.318912 984.62327 NaN NaN NaN NaN NaN NaN NaN 107.58 1 101.4 100.9 101.9 -6.1757 0 0 0 0.97444 1 71944 71944 0.69038 0.088878 1 + 22880 22611 15563 15854 26941 26941 0.13034353538978394 IKRQEKNRL 9 Unmodified _IKRQEKNRL_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9079895019531 3 395.578923 1183.71494 0.87541 0.0003463 -2.1999 -0.00087024 -1.3245 -0.00052394 395.5789879178461 18.373 0.36309 15.751 15.515 15.878 -2.6215 69 32 4 0 0 0 0.5636 1 9554 9554 3.5871 1.0886 1 12439000 22881 5337 15564 15855 26942 26942 0.13042992165514988 IKRTKNVD 8 Unmodified _IKRTKNVD_ 0 0 0 REV__nc|ENSG00000276234|O75478|TADA2A REV__nc|ENSG00000276234|O75478|TADA2A MSMS AL20221201_MKP_PDAC_01 4 487.2926025390625 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 109.04 1 102.86 102.36 103.36 -6.1757 0 0 0 0.97444 1 72842 72842 2.3027 0 1 + 22882 24658 15565 15856 26943 26943 0.0842456505440623 IKRTKNVD 8 Unmodified _IKRTKNVD_ 0 0 0 REV__nc|ENSG00000276234|O75478|TADA2A REV__nc|ENSG00000276234|O75478|TADA2A MSMS AL20221201_MKP_PDAC_01 4 487.2918090820312 2 487.293091 972.571629 NaN NaN NaN NaN NaN NaN NaN 109.29 1 103.11 102.61 103.61 -6.1757 0 0 0 0.97444 1 72993 72993 2.3027 0 1 + 22883 24658 15565 15856 26944 26944 0.0842456505440623 IKRTTRAA 8 Unmodified _IKRTTRAA_ 0 0 0 REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7886047363281 2 458.787976 915.561398 0.46121 0.0002116 -0.39266 -0.00018015 0.068554 3.1452E-05 458.7877896758519 82.641 0.46375 82.144 81.917 82.38 -0.49751 33 19 3 0 0 0 0.81107 1 45189 45189 0 0 1 2363100 + 22884 26463 15566 15857 26945 26945 0.10024002119826037 IKRTTRAA 8 Unmodified _IKRTTRAA_ 0 0 0 REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF REV__ENST00000394997.5_1_14:62162478-62187101:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.7879638671875 2 458.787976 915.561398 1.8238 0.00083676 -1.4464 -0.00066361 0.3774 0.00017315 458.787188689035 82.087 0.98023 82.149 81.862 82.842 0.061996 94 38 5 0 0 0 0.81107 2 45395 45395;45513 0 0 1 225050000 + 22885 26463 15566 15857 26946;26947 26946 0.10024002119826037 IKRYIYRKKHL 11 Unmodified _IKRYIYRKKHL_ 0 0 0 REV__ENSG00000148483|ENST00000377495|TMEM236 REV__ENSG00000148483|ENST00000377495|TMEM236 MSMS AL20221201_MKP_PDAC_01 4 759.476318359375 2 759.474995 1516.93544 NaN NaN NaN NaN NaN NaN NaN 98.732 1 92.556 92.056 93.056 -6.1757 0 0 0 0.93893 1 65534 65534 3.2813 1.7994 1 + 22886 20955 15567 15858 26948 26948 0.19764637492903603 IKSLIVPD 8 Unmodified _IKSLIVPD_ 0 0 0 REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9 REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7761535644531 2 442.776211 883.537869 NaN NaN NaN NaN NaN NaN NaN 58.362 1 57.872 57.372 58.372 -0.49079 0 0 0 0.40668 1 31734 31734 53.576 6.6547 1 + 22887 17268 15568 15859 26949 26949 0.09144143562650697 IKSLIVPD 8 Unmodified _IKSLIVPD_ 0 0 0 REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9 REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7764282226562 2 442.776211 883.537869 1.5712 0.0006957 0.38799 0.00017179 1.9592 0.0008675 442.7764351684218 64.095 0.37358 57.919 57.737 58.11 -6.1757 25 19 2 0 0 0 0.31612 1 41512 41512 53.576 3.9067 1 10816000 + 22888 17268 15568 15859 26950 26950 0.09144143562650697 IKSNRGELTLF 11 Unmodified _IKSNRGELTLF_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5792846679688 3 426.578588 1276.71394 NaN NaN NaN NaN NaN NaN NaN 27.594 1 27.623 27.123 28.123 0.028664 0 0 0 0.93984 1 14345 14345 2.6312 0.54523 1 + 22889 17283 15569 15860 26951 26951 0.08664733005934977 IKSRSSPSPI 10 Unmodified _IKSRSSPSPI_ 0 0 0 REV__ENST00000515313.1_1_8:101563636-101563810:-|nuORF REV__ENST00000515313.1_1_8:101563636-101563810:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8773498535156 3 357.876746 1070.60841 0.84437 0.00030218 1.1427 0.00040894 1.9871 0.00071112 357.8769902053676 23.475 0.31356 20.648 20.477 20.791 -2.8273 52 18 5 0 0 0 0.46514 1 12644 12644 15.739 0 1 8343400 + 22890 28212 15570 15861 26952 26952 0.07592816880332975 IKVKKGLHVTA 11 Unmodified _IKVKKGLHVTA_ 0 0 0 nc|ENSG00000006118|Q24JP5-3|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A MSMS AL20221201_MKP_PDAC_01 4 597.3905029296875 2 597.390065 1192.76558 NaN NaN NaN NaN NaN NaN NaN 109.72 1 103.54 103.04 104.04 -6.1757 0 0 0 0.94307 1 73258 73258 0.30703 0.30703 1 22891 328 15571 15862 26953 26953 0.1769052149052186 IKVTPANP 8 Unmodified _IKVTPANP_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2535400390625 2 420.252903 838.491253 0.37034 0.00015564 -0.62095 -0.00026096 -0.25061 -0.00010532 420.25264513298004 67.124 0.38382 66.642 66.46 66.844 -0.48238 36 17 3 0 0 0 0.76266 1 36627 36627 11.64 0.81637 1 4928300 22892 15462 15572 15863 26954 26954 0.06554703731353584 IKVTPANP 8 Unmodified _IKVTPANP_ 0 0 0 ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.498291015625 1 839.498529 838.491253 -0.11878 -9.9719E-05 -0.11401 -9.571E-05 -0.23279 -0.00019543 839.4988615045028 67.117 0.36238 66.634 66.459 66.822 -0.48269 36 16 3 0 0 0 0.80383 1 36727 36727 4.3292 0.38484 1 6475500 22893 15462 15572 15863 26955 26955 0.06554703731353584 IKWRRRRRRRR 11 Unmodified _IKWRRRRRRRR_ 0 0 0 ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF ENST00000303961.8_1_19:41306371-41306464:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.0433349609375 2 848.046173 1694.07779 NaN NaN NaN NaN NaN NaN NaN 98.989 1 98.989 98.489 99.489 0 0 0 0 0.9435 1 54660 54660 0 0 1 22894 11600 15573 15864 26956 26956 0.25851707798278767 IKWRYFNVP 9 Unmodified _IKWRYFNVP_ 0 0 0 REV__ENSG00000099338|ENST00000409235|CATSPERG REV__ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3443603515625 2 611.840208 1221.66586 3.1412 0.0019219 0.12908 7.8978E-05 3.2703 0.0020009 612.3416688494236 97.104 1.0854 97.097 96.826 97.911 -0.007019 113 40 3 0 0 0 0.61381 2 53837 53837;54230 0.52476 0 1 81982000 + 22895 17975 15574 15865 26957;26958 26957 0.06389703876538988 IKYDGKDS 8 Unmodified _IKYDGKDS_ 0 0 0 ENSG00000186767|ENST00000374884|SPIN4 ENSG00000186767|ENST00000374884|SPIN4 ENSG00000186767|ENST00000374884|SPIN4 MSMS AL20221201_MKP_PDAC_01 4 463.2354431152344 2 463.234907 924.455261 NaN NaN NaN NaN NaN NaN NaN 76.457 1 70.281 69.781 70.781 -6.1757 0 0 0 0.9192 1 50010 50010 16.942 3.4344 1 22896 9503 15575 15866 26959 26959 -0.009987982361394643 IKYEFQEWD 9 Unmodified _IKYEFQEWD_ 0 0 0 REV__nc|ENSG00000137497|Q14980-4|NUMA1 REV__nc|ENSG00000137497|Q14980-4|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.2928466796875 2 629.292953 1256.57135 0.85054 0.00053524 -0.022382 -1.4085E-05 0.82816 0.00052115 629.2929091257628 57.387 0.23713 57.321 57.201 57.438 -0.066032 30 11 3 0 0 0 0.32871 1 31223 31223 15.847 7.1018 1 6404800 + 22897 20245 15576 15867 26960 26960 -0.04666899456083229 IKYKSKRKPK 10 Unmodified _IKYKSKRKPK_ 0 0 0 REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 638.4166259765625 2 638.416614 1274.81868 NaN NaN NaN NaN NaN NaN NaN 103.77 1 97.595 97.095 98.095 -6.1757 0 0 0 0.99248 1 69546 69546 1.4819 1.0812 1 + 22898 20588 15577 15868 26961 26961 0.19225899273146752 IKYLQQVNH 9 Unmodified _IKYLQQVNH_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5500793457031 3 381.548741 1141.62439 0.58109 0.00022172 -0.68661 -0.00026197 -0.10551 -4.0259E-05 381.54855194955456 23.168 0.31706 20.389 20.269 20.586 -2.7784 51 29 2 0 0 0 0.16226 2 12475 12475;12594 19.362 4.1135 1 16015000 22899 10194 15578 15869 26962;26963 26962 0.059245231172326385 IKYPENFFLL 10 Unmodified _IKYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3555908203125 2 642.355357 1282.69616 0.55519 0.00035663 -0.13027 -8.3683E-05 0.42492 0.00027295 642.3550477948347 90.085 0.41782 90.127 89.913 90.331 0.042175 36 14 3 0 0 0 0.048223 2 50073 50073;50173 59.052 28.416 1 26381000 22900 10449;8229 15579 15870 26964;26965 26964 0.06612017751081112 IKYPENFFLL 10 Unmodified _IKYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3561401367188 2 642.355357 1282.69616 0.41851 0.00026883 0.76619 0.00049216 1.1847 0.000761 642.3553844477459 99.6 0.16714 93.424 93.341 93.508 -6.1757 29 10 4 0 0 0 0.11322 1 66365 66365 51.63 15.124 1 215080000 22901 10449;8229 15579 15870 26966 26966 0.06612017751081112 IKYPTDPQL 9 Unmodified _IKYPTDPQL_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7949829101562 2 537.795132 1073.57571 0.30564 0.00016437 0.32889 0.00017688 0.63453 0.00034125 537.7953288137987 27.875 0.34819 24.727 24.587 24.935 -3.1482 31 18 2 0 0 0 0.040683 1 15567 15567 49.554 9.3151 1 15524000 + 22902 18769 15580 15871 26967 26967 0.0418660975747116 IKYPTDPQL 9 Unmodified _IKYPTDPQL_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 537.795132 1073.57571 0.30564 0.00016437 0.32889 0.00017688 0.63453 0.00034125 537.7953288137987 27.875 0.34819 24.727 24.587 24.935 -3.1482 0.070557 4.752E-05 NaN 49.554 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 15524000 + 22903 18769 15580 15871 0.0418660975747116 IKYSRGPFSL 10 Unmodified _IKYSRGPFSL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8894958496094 3 389.888874 1166.64479 1.3944 0.00054366 0.012523 4.8827E-06 1.4069 0.00054854 389.8888041689408 32.31 0.53421 28.453 28.198 28.732 -3.8562 106 30 5 0 0 0 0.47059 1 18278 18278 17.863 1.2973 1 388570000 22904 6002 15581 15872 26968 26968 0.06813693777053231 IKYYDPYDK 9 Unmodified _IKYYDPYDK_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7979125976562 2 602.797872 1203.58119 0.27145 0.00016363 -1.6262 -0.00098026 -1.3547 -0.00081663 602.7970315691966 59.814 0.17793 59.323 59.214 59.392 -0.49079 13 8 2 0 0 0 0.21847 1 32580 32580 1.6526 0 1 1446700 + 22905 21838 15582 15873 26969 26969 -0.012457114507242295 IKYYDPYDK 9 Unmodified _IKYYDPYDK_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 602.797872 1203.58119 0.010566 6.3691E-06 -1.6293 -0.00098217 -1.6188 -0.0009758 602.7972742625368 59.217 0.23967 59.217 59.045 59.285 0 -0.053092 -2.9933E-06 NaN 1.6526 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 766670 + 22906 21838 15582 15873 -0.012457114507242295 ILAARPGQF 9 Unmodified _ILAARPGQF_ 0 0 0 REV__ENST00000225538.3_1_17:3819634-3819784:-|nuORF REV__ENST00000225538.3_1_17:3819634-3819784:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7861022949219 2 486.784902 971.55525 1.1517 0.00056063 0.27762 0.00013514 1.4293 0.00069578 486.7855575161976 49.696 0.15472 49.647 49.568 49.723 -0.048828 11 7 2 0 0 0 0.14602 1 26873 26873 28.487 0 1 2181400 + 22907 24778 15583 15874 26970 26970 0.06833483888328828 ILACGVAKV 9 Carbamidomethyl (C) _ILAC(Carbamidomethyl (C))GVAKV_ ILAC(1)GVAKV ILAC(46)GVAKV 0 1 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7758178710938 2 465.775688 929.536823 -0.114 -5.3097E-05 -0.1204 -5.6079E-05 -0.2344 -0.00010918 465.7755823878931 37.781 0.19873 37.51 37.4 37.599 -0.27133 16 9 2 0 0 0 0.047196 1 19860 19860 46.021 13.715 1 4920400 22908 10861 15584 15875 26971 26971 957 0.06923605922111165 ILADATEQV 9 Unmodified _ILADATEQV_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;ENST00000455725.6_1_11:43333659-43340000:+|nuORF;ENST00000530300.1_1_11:43333659-43340360:+|nuORF nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2564697265625 2 480.25584 958.497126 1.6917 0.00081245 -0.97318 -0.00046738 0.71853 0.00034508 480.2555056936707 47.698 0.34846 42.464 42.327 42.675 -5.2339 30 20 2 0 0 0 0.2143 1 29717 29717 21.747 0 1 9841600 22909 7446 15585 15876 26972 26972 0.01621757452392103 ILAELLLRV 9 Unmodified _ILAELLLRV_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3472290039062 2 520.347335 1038.68012 NaN NaN NaN NaN NaN NaN NaN 89.177 1 89.225 88.725 89.725 0.047852 0 0 0 0.027645 1 49609 49609 69.105 25.247 1 22910 4554 15586 15877 26973 26973 0.1623235630486306 ILAELLLRV 9 Unmodified _ILAELLLRV_ 0 0 0 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 ENSG00000134058|ENST00000256443|CDK7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.2596435546875 2 520.347335 1038.68012 0.46529 0.00024211 0.009844 5.1223E-06 0.47514 0.00024724 520.3473815577353 99.723 0.1401 93.547 93.46 93.6 -6.1757 19 8 3 0 0 0 0.17729 1 66469 66469 21.537 8.4945 1 95508000 22911 4554 15586 15877 26974 26974 0.1623235630486306 ILAELPEDFKA 11 Unmodified _ILAELPEDFKA_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.3405151367188 2 623.339904 1244.66525 0.28258 0.00017614 0.6452 0.00040218 0.92778 0.00057832 623.3402238493969 63.79 0.2197 63.79 63.659 63.879 0 15 8 2 0 0 0 0.12819 1 35563 35563 39.213 21.77 1 1516400 22912 8967 15587 15878 26975 26975 0.052708196461935586 ILAELPEDFKA 11 Unmodified _ILAELPEDFKA_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 623.339904 1244.66525 0.61995 0.00038644 0.35189 0.00021935 0.97184 0.00060579 623.3398696503632 64.351 0.25303 63.866 63.696 63.949 -0.48512 0.038151 -9.9915E-05 NaN 39.213 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2711200 22913 8967 15587 15878 0.052708196461935586 ILANDGVLLAA 11 Unmodified _ILANDGVLLAA_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000560033.5_1_15:78834730-78834988:+|nuORF ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3161010742188 2 535.316232 1068.61791 0.054714 2.9289E-05 0.96739 0.00051786 1.0221 0.00054715 535.3167556212644 70.265 0.21529 69.786 69.653 69.869 -0.47903 17 9 2 0 0 0 0.631 1 38427 38427 17.113 3.2068 1 949920 22914 654 15588 15879 26976 26976 0.08634585165850694 ILAPCQVRP 9 Unmodified _ILAPCQVRP_ 0 0 0 REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7861022949219 2 498.786587 995.558621 0.30913 0.00015419 -1.0267 -0.00051208 -0.71753 -0.0003579 498.785990053369 81.578 0.3898 81.578 81.37 81.759 0 36 19 2 0 0 0 0.58865 1 45263 45263 2.0598 0.21551 1 1102400 + 22915 20231 15589 15880 26977 26977 0.06066410670678124 ILAPCQVRP 9 Unmodified _ILAPCQVRP_ 0 0 0 REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 498.786587 995.558621 0.30913 0.00015419 -1.0267 -0.00051208 -0.71753 -0.0003579 498.785990053369 81.578 0.3898 81.578 81.37 81.759 0 0.10497 -0.00015163 NaN 2.0598 36 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1102400 + 22916 20231 15589 15880 0.06066410670678124 ILAPCQVRP 9 Unmodified _ILAPCQVRP_ 0 0 0 REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF REV__ENST00000490918.5_1_6:3140576-3152806:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 498.786587 995.558621 0.5588 0.00027872 0.030411 1.5168E-05 0.58921 0.00029389 498.7858381042309 82.029 0.46228 81.533 81.236 81.698 -0.4952 0.060012 0.00090287 NaN 2.0598 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1229900 + 22917 20231 15589 15880 0.06066410670678124 ILAPLSSW 8 Unmodified _ILAPLSSW_ 0 0 0 ENSG00000263429|ENST00000581851|TMEM238L ENSG00000263429|ENST00000581851|TMEM238L ENSG00000263429|ENST00000581851|TMEM238L MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7564392089844 2 443.755278 885.496004 1.3615 0.00060417 0.68823 0.0003054 2.0497 0.00090958 443.7551980898258 54.176 0.45148 48.311 48.139 48.591 -5.8653 42 26 2 0 0 0 0.5953 1 34348 34348 26.341 4.5946 1 11099000 22918 10854 15590 15881 26978 26978 0.0486758787413919 ILAQEIHDV 9 Unmodified _ILAQEIHDV_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MSMS AL20221201_MKP_PDAC_01 4 519.2850952148438 2 519.284931 1036.55531 NaN NaN NaN NaN NaN NaN NaN 48.308 1 43.074 42.574 43.574 -5.2339 0 0 0 0.16996 1 30079 30079 34.402 3.7652 1 22919 1711 15591 15882 26979 26979 0.03849439097643881 ILASAAMATSI 11 Unmodified _ILASAAMATSI_ 0 0 0 REV__ENST00000440899.5_1_7:43978041-43988321:+|nuORF REV__ENST00000440899.5_1_7:43978041-43988321:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.7888793945312 2 524.788992 1047.56343 NaN NaN NaN NaN NaN NaN NaN 101.25 1 95.071 94.571 95.571 -6.1757 0 0 0 0.76159 1 67901 67901 13.906 0.39817 1 + 22920 27083 15592 15883 26980 26980 0.04155250022790824 ILAVFDATPQ 10 Unmodified _ILAVFDATPQ_ 0 0 0 REV__ENST00000392834.7_1_11:118967710-118972378:-|nuORF REV__ENST00000392834.7_1_11:118967710-118972378:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.2518920898438 2 537.795132 1073.57571 0.58164 0.0003128 -0.87715 -0.00047173 -0.29551 -0.00015892 537.7949248483294 43.299 0.34515 38.534 38.318 38.663 -4.7648 39 24 2 0 0 0 0.14716 1 26319 26319 41.84 1.8823 1 32484000 + 22921 26403 15593 15884 26981 26981 0.04186609757448423 ILAWLPSY 8 Unmodified _ILAWLPSY_ 0 0 0 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.771728515625 2 481.770929 961.527304 0.13032 6.2783E-05 3.1943 0.0015389 3.3246 0.0016017 481.77164598529316 44.225 0.20991 44.203 44.136 44.346 -0.022068 15 11 2 0 0 0 0.80232 1 23758 23758 5.2307 0 1 7095700 22922 8947 15594 15885 26982 26982 0.04500160908230555 ILCELINKL 9 Carbamidomethyl (C) _ILC(Carbamidomethyl (C))ELINKL_ ILC(1)ELINKL ILC(110)ELINKL 0 1 0 nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.33203125 2 558.328285 1114.64202 0.5621 0.00031384 1.1064 0.00061772 1.6685 0.00093156 558.3295485335977 69.874 0.36751 69.905 69.683 70.05 0.030914 37 18 3 0 0 0 0.0071894 1 38394 38394 111.29 69.192 1 10514000 22923 3314 15595 15886 26983 26983 337 0.08928102327877241 ILCELINKL 9 Carbamidomethyl (C) _ILC(Carbamidomethyl (C))ELINKL_ ILC(1)ELINKL ILC(110)ELINKL 0 1 0 nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.328857421875 2 558.328285 1114.64202 1.3926 0.00077755 -0.54912 -0.00030659 0.84352 0.00047096 558.3279122595796 88.29 0.62685 82.114 81.814 82.441 -6.1757 79 34 3 0 0 0 0.0071894 2 58181 58055;58181 111.29 53.816 1 21998000 22924 3314 15595 15886 26984;26985 26985 337 0.08928102327877241 ILCELINKL 9 Carbamidomethyl (C) _ILC(Carbamidomethyl (C))ELINKL_ ILC(1)ELINKL ILC(44)ELINKL 0 1 0 nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.8004150390625 2 558.328285 1114.64202 1.4403 0.00080418 -1.7465 -0.0009751 -0.30613 -0.00017092 558.3281755941164 87.979 0.049263 81.803 81.765 81.814 -6.1757 4 2 2 0 0 0 0.087822 1 58024 58024 43.772 18.373 1 6522900 22925 3314 15595 15886 26986 26986 337 0.08928102327877241 ILCLFYIAL 9 Unmodified _ILCLFYIAL_ 0 0 0 REV__ENSG00000255837|ENST00000538986|TAS2R20 REV__ENSG00000255837|ENST00000538986|TAS2R20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8765869140625 3 356.876918 1067.60893 -0.58509 -0.00020881 0.15223 5.4326E-05 -0.43287 -0.00015448 356.87698190475714 29.914 0.19063 29.914 29.824 30.015 0 19 9 3 0 0 0 0.3554 1 15513 15513 19.257 5.3509 1 3466800 + 22926 24545 15596 15887 26987 26987 0.07782520275804927 ILCLFYIAL 9 Unmodified _ILCLFYIAL_ 0 0 0 REV__ENSG00000255837|ENST00000538986|TAS2R20 REV__ENSG00000255837|ENST00000538986|TAS2R20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 356.876918 1067.60893 -0.58509 -0.00020881 0.15223 5.4326E-05 -0.43287 -0.00015448 356.87698190475714 29.914 0.19063 29.914 29.824 30.015 0 0 0 NaN 19.257 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3466800 + 22927 24545 15596 15887 0.07782520275804927 ILCPHNPAVRT 11 Unmodified _ILCPHNPAVRT_ 0 0 0 ENST00000478770.6_1_1:2113296-2116445:+|nuORF ENST00000478770.6_1_1:2113296-2116445:+|nuORF ENST00000478770.6_1_1:2113296-2116445:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.8322143554688 2 610.832057 1219.64956 0.20676 0.0001263 -0.30542 -0.00018656 -0.098659 -6.0264E-05 610.8318270586751 37.978 0.27106 37.995 37.859 38.13 0.01704 28 12 3 0 0 0 0.73115 1 20250 20250 1.3295 0.13619 1 5047600 22928 14025 15597 15888 26988 26988 0.048522546481535755 ILDDIIASV 9 Unmodified _ILDDIIASV_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7762756347656 2 479.776408 957.538263 0.8835 0.00042388 1.2248 0.00058762 2.1083 0.0010115 479.7769934607268 81.314 0.16022 80.821 80.75 80.91 -0.49247 10 6 2 0 0 0 0.30562 1 44554 44554 16.942 4.4107 1 547610 22929 8170 15598 15889 26989 26989 0.057795184918632 ILDDLLTAGPI 11 Unmodified _ILDDLLTAGPI_ 0 0 0 REV__ENSG00000076650|ENST00000170564|GPATCH1 REV__ENSG00000076650|ENST00000170564|GPATCH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.308837890625 2 570.829172 1139.64379 0.87183 0.00049766 -0.52206 -0.00029801 0.34977 0.00019966 570.830293200092 81.743 0.14802 81.248 81.139 81.287 -0.4952 7 5 2 0 0 0 0.30452 1 44723 44723 3.2813 0 1 272530 + 22930 17593 15599 15890 26990 26990 0.07955434617474566 ILDDSALYL 9 Unmodified _ILDDSALYL_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7745056152344 2 511.773865 1021.53318 0.28307 0.00014487 0.12256 6.2725E-05 0.40563 0.00020759 511.77379893408767 76.109 0.18381 76.109 76.064 76.248 0 12 7 2 0 0 0 0.25297 1 42331 42331 19.439 6.9074 1 1028200 22931 2693 15600 15891 26991 26991 0.02327214629235641 ILDEAHERTL 10 Unmodified _ILDEAHERTL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000587125.1_1_17:58040633-58079710:-|nuORF;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 ENSG00000109606|ENST00000336812|DHX15;nc|ENSG00000108406|Q8IX18-4|DHX40 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5476989746094 3 399.547177 1195.6197 NaN NaN NaN NaN NaN NaN NaN 29.16 1 29.16 28.66 29.66 0 0 0 0 0.41558 1 15096 15096 30.431 0 1 22932 2658;2567 15601 15892 26992 26992 0.029715941838276194 ILDEHVQRV 9 Unmodified _ILDEHVQRV_ 0 0 0 ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1 ENST00000461023.5_1_16:343426-396314:-|nuORF ENST00000461023.5_1_16:343426-396314:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2090759277344 3 370.208495 1107.60366 -0.61239 -0.00022671 0.62093 0.00022987 0.0085377 3.1607E-06 370.20869675072845 27.009 0.21056 27.009 26.909 27.12 0 23 9 3 0 0 0 0.18255 1 13892 13892 24.882 8.3157 1 10202000 22933 2103 15602 15893 26993 26993 0.0541593273756007 ILDEMCTIGY 10 Unmodified _ILDEMCTIGY_ 0 0 0 REV__ENST00000404151.1_1_6:34584794-34584938:+|nuORF REV__ENST00000404151.1_1_6:34584794-34584938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.26513671875 2 579.264493 1156.51443 0.23804 0.00013789 -0.39854 -0.00023086 -0.1605 -9.2974E-05 579.2643989680452 62.754 0.28463 62.754 62.611 62.895 0 28 11 3 0 0 0 0.68719 1 35081 35081 4.3292 0 1 1774200 + 22934 26638 15603 15894 26994 26994 -0.05756406328464436 ILDEMSHKL 9 Unmodified _ILDEMSHKL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5272521972656 3 362.526837 1084.55868 1.4299 0.00051838 0.37824 0.00013712 1.8081 0.0006555 362.52673032611585 43.019 0.37413 38.328 38.119 38.493 -4.6905 59 24 3 0 0 0 0.07087 1 25998 25998 30.703 17.831 1 20893000 22935 3266 15604 15895 26995 26995 0.019783658800179182 ILDFYPFYTI 10 Unmodified _ILDFYPFYTI_ 0 0 0 REV__ENST00000342166.9_1_2:32249020-32249119:-|nuORF REV__ENST00000342166.9_1_2:32249020-32249119:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 431.2277526855469 3 431.225152 1290.65363 NaN NaN NaN NaN NaN NaN NaN 104.93 1 98.755 98.255 99.255 -6.1757 0 0 0 0.99388 1 70240 70240 0.56317 0.057215 1 + 22936 25715 15605 15896 26996 26996 0.01992622622833551 ILDGNQLHI 9 Unmodified _ILDGNQLHI_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7850952148438 2 511.785099 1021.55564 NaN NaN NaN NaN NaN NaN NaN 52.714 1 52.714 52.214 53.214 0 0 0 0 0.26667 1 29182 29182 26.884 2.2098 1 22937 401 15606 15897 26997 26997 0.04572858817527958 ILDGNQLHI 9 Unmodified _ILDGNQLHI_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MSMS AL20221201_MKP_PDAC_01 4 511.78564453125 2 511.785099 1021.55564 NaN NaN NaN NaN NaN NaN NaN 59.499 1 53.384 52.884 53.884 -6.1147 0 0 0 0.12337 1 38207 38207 39.957 1.8061 1 22938 401 15606 15897 26998 26998 0.04572858817527958 ILDGPHLRDFY 11 Unmodified _ILDGPHLRDFY_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2344665527344 3 449.234822 1344.68264 1.015 0.00045598 -0.53714 -0.0002413 0.47788 0.00021468 449.2345893257033 33.335 0.2281 29.35 29.223 29.451 -3.9853 25 12 3 0 0 0 0.30985 1 19132 19132 16.275 4.047 1 16111000 + 22939 21090 15607 15898 26999 26999 0.02408159971855639 ILDIQELALR 10 Unmodified _ILDIQELALR_ 0 0 0 REV__ENSG00000141096|ENST00000268793|DPEP3 REV__ENSG00000141096|ENST00000268793|DPEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2387390136719 3 395.239684 1182.69722 -0.083665 -3.3068E-05 -2.2655 -0.00089542 -2.3492 -0.00092849 395.2388145804188 16.86 0.14063 16.865 16.787 16.927 0.0050564 18 12 2 0 0 0 0.71177 1 8490 8490 1.5923 0 1 708930 + 22940 20518 15608 15899 27000 27000 0.11318232119970162 ILDKIVQKV 9 Unmodified _ILDKIVQKV_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5652160644531 3 352.56562 1054.67503 0.32127 0.00011327 -0.59182 -0.00020865 -0.27055 -9.5387E-05 352.5653926179238 40.685 0.22299 40.69 40.614 40.837 0.0050583 15 10 2 0 0 0 0.037253 1 21724 21724 51.415 20.712 1 2452000 22941 5841 15609 15900 27001 27001 0.14988052442208755 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.897216796875 3 357.897258 1070.66995 -0.50446 -0.00018054 -0.0064971 -2.3253E-06 -0.51096 -0.00018287 357.89719476952473 18.496 0.19461 18.496 18.417 18.611 0 62 20 4 0 0 0 0.091924 1 9170 9170 27.088 9.2252 1 17127000 22942 1671 15610 15901 27002 27002 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.3416137695312 2 536.342249 1070.66995 -0.32034 -0.00017181 -0.21742 -0.00011661 -0.53775 -0.00028842 536.3422854575961 18.502 0.095936 18.502 18.447 18.543 0 21 11 2 0 0 0 0.2546 1 9195 9195 19.362 1.9193 1 932810 22943 1671 15610 15901 27003 27003 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8976135253906 3 357.897258 1070.66995 -0.010312 -3.6905E-06 1.0525 0.00037669 1.0422 0.000373 357.8974777693159 18.457 0.19334 18.463 18.386 18.58 0.0060463 16 9 3 0 0 0 0.12357 1 9356 9356 23.964 5.2429 1 3508500 22944 1671 15610 15901 27004 27004 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3433227539062 2 536.342249 1070.66995 1.0545 0.00056557 0.70583 0.00037857 1.7603 0.00094414 536.3426212773256 20.41 0.31746 17.717 17.544 17.862 -2.693 41 17 3 0 0 0 0.010362 2 10917 10816;10917 79.427 33.687 1 10637000 22945 1671 15610 15901 27005;27006 27006 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8979187011719 3 357.897258 1070.66995 1.8231 0.00065247 0.3329 0.00011914 2.156 0.00077161 357.89730720660253 20.408 0.48318 17.715 17.494 17.977 -2.693 98 28 5 0 0 0 0.040683 1 10883 10883 39.213 9.9319 1 163700000 22946 1671 15610 15901 27007 27007 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.342249 1070.66995 -0.32034 -0.00017181 -0.21742 -0.00011661 -0.53775 -0.00028842 536.3422854575961 18.502 0.095936 18.502 18.447 18.543 0 0.058905 -0.00027713 NaN 19.362 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 932810 22947 1671 15610 15901 0.1374374857962266 ILDKKVEKV 9 Unmodified _ILDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.342249 1070.66995 -0.63659 -0.00034143 1.2553 0.00067329 0.61876 0.00033186 536.3430077441877 18.361 0.051384 18.384 18.353 18.404 0.023106 -0.058905 0.0013027 NaN 19.362 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 327010 22948 1671 15610 15901 0.1374374857962266 ILDLLVWLRYF 11 Unmodified _ILDLLVWLRYF_ 0 0 0 nc|ENSG00000290584|Q9P1P4|TAAR3P nc|ENSG00000290584|Q9P1P4|TAAR3P nc|ENSG00000290584|Q9P1P4|TAAR3P MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.6213073730469 3 484.286746 1449.83841 1.0361 0.00050176 -0.16687 -8.0815E-05 0.8692 0.00042094 484.28663837241476 87.403 0.47559 81.227 80.93 81.405 -6.1757 58 25 4 0 0 0 0.71728 1 57697 57697 2.6312 0 1 23261000 22949 16633 15611 15902 27008 27008 0.13148230493266055 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.818603515625 2 509.81841 1017.62227 0.41085 0.00020946 0.15711 8.0099E-05 0.56796 0.00028956 509.8184843120666 75.377 0.33139 75.377 75.168 75.5 0 32 14 3 0 0 0 0.12841 1 41879 41879 30.225 3.3412 1 1874100 22950 2582 15612 15903 27009 27009 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8185424804688 2 509.81841 1017.62227 0.36408 0.00018561 0.024475 1.2478E-05 0.38855 0.00019809 509.8184035963241 75.737 0.53154 75.26 74.997 75.528 -0.47714 82 24 5 0 0 0 0.019303 2 41385 41385;41492 64.236 28.109 1 58421000 22951 2582 15612 15903 27010;27011 27010 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8187255859375 2 509.81841 1017.62227 0.48788 0.00024873 -1.8495 -0.00094292 -1.3616 -0.00069419 509.81820924938387 75.055 0.40285 75.101 74.984 75.387 0.045959 43 19 3 0 0 0 0.026094 2 41363 41363;41463 57.471 25.166 1 19063000 22952 2582 15612 15903 27012;27013 27012 0.11416094379421793 ILDPHVVLL 9 Unmodified _ILDPHVVLL_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8194580078125 2 509.81841 1017.62227 0.85789 0.00043737 0.13097 6.6769E-05 0.98886 0.00050414 509.81834371972155 90.499 1.5173 84.323 83.376 84.894 -6.1757 217 87 3 0 0 0 0.016184 4 59270 59270;59450;59586;59716 67.344 28.109 1 95666000 22953 2582 15612 15903 27014;27015;27016;27017 27014 0.11416094379421793 ILDPTEFIDL 10 Unmodified _ILDPTEFIDL_ 0 0 0 REV__nc|ENSG00000166006|Q96PR1-4|KCNC2 REV__nc|ENSG00000166006|Q96PR1-4|KCNC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.1661376953125 3 392.544662 1174.61216 0.11859 4.655E-05 1.9228 0.00075479 2.0414 0.00080134 392.54531660743805 48.987 0.20193 48.944 48.847 49.049 -0.04369 15 9 2 0 0 0 0.23946 1 26420 26420 3.5871 0.85186 1 1873500 + 22954 22076 15613 15904 27018 27018 0.03183441863529879 ILDPVSTGTLI 11 Unmodified _ILDPVSTGTLI_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8893432617188 3 376.88854 1127.64379 1.235 0.00046547 1.1512 0.00043386 2.3862 0.00089934 376.88898726163 54.611 0.48621 48.746 48.542 49.029 -5.8653 61 29 3 0 0 0 0.58219 1 34696 34696 9.7643 0 1 62852000 + 22955 19319 15614 15905 27019 27019 0.08507434617490617 ILDQKINEV 9 Unmodified _ILDQKINEV_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.3065185546875 2 536.305864 1070.59717 0.22397 0.00012012 0.50901 0.00027299 0.73298 0.0003931 536.3061178870561 37.67 0.29605 37.67 37.51 37.806 0 46 14 4 0 0 0 0.010301 1 20058 20058 79.596 13.14 1 32105000 22956 3159 15615 15906 27020 27020 0.06469994786175448 ILDQKINEV 9 Unmodified _ILDQKINEV_ 0 0 0 ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3064575195312 2 536.305864 1070.59717 0.54464 0.00029209 0.31078 0.00016667 0.85542 0.00045877 536.3061661057775 43.759 0.47541 38.994 38.772 39.248 -4.7648 88 29 4 0 0 0 0.0060143 2 26634 26496;26634 114.5 11.143 1 113430000 22957 3159 15615 15906 27021;27022 27022 0.06469994786175448 ILDRAVIEH 9 Unmodified _ILDRAVIEH_ 0 0 0 nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.3063354492188 2 533.306198 1064.59784 0.54557 0.00029095 -0.41195 -0.0002197 0.13361 7.1255E-05 533.3058185534568 38.459 0.31339 38.459 38.306 38.62 0 52 23 3 0 0 0 0.20428 1 20586 20586 22.736 2.2827 1 15224000 22958 5081 15616 15907 27023 27023 0.06812834225888764 ILDSQERAF 9 Unmodified _ILDSQERAF_ 0 0 0 nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-3|RGS7;ENSG00000182901|ENST00000440928|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENST00000553690.5_1_14:72932488-72940644:+|nuORF;nc|ENSG00000182732|P49758-12|RGS6;nc|ENSG00000182732|P49758-6|RGS6;nc|ENSG00000182732|P49758-11|RGS6;nc|ENSG00000182732|P49758-7|RGS6;nc|ENSG00000182732|P49758-10|RGS6;nc|ENSG00000182732|P49758-9|RGS6;nc|ENSG00000182732|P49758-16|RGS6;nc|ENSG00000182732|P49758-5|RGS6;nc|ENSG00000182732|P49758-8|RGS6;nc|ENSG00000182732|P49758|RGS6;nc|ENSG00000182732|P49758-13|RGS6;nc|ENSG00000182732|P49758-14|RGS6;nc|ENSG00000182732|P49758-15|RGS6;nc|ENSG00000182732|P49758-2|RGS6;ENSG00000182732|ENST00000553525|RGS6 nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182732|P49758-12|RGS6 nc|ENSG00000182901|P49802-4|RGS7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.8114013671875 2 539.780013 1077.54547 0.80359 0.00043376 0.67475 0.00036422 1.4783 0.00079798 539.780037477557 63.466 0.43328 57.29 57.13 57.564 -6.1757 35 24 2 0 0 0 0.18521 1 41183 41183 16.942 10.219 1 15988000 22959 9099;9080 15617 15908 27024 27024 0.009802510922781948 ILDVFWWIG 9 Unmodified _ILDVFWWIG_ 0 0 0 REV__ENSG00000169490|ENST00000456397|TM2D2 REV__ENSG00000169490|ENST00000456397|TM2D2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.3465576171875 2 574.810585 1147.60662 1.0997 0.00063209 -0.2726 -0.00015669 0.82706 0.0004754 575.3115680641896 63.643 0.32247 57.467 57.292 57.615 -6.1757 26 17 2 0 0 0 0.16785 1 41274 41274 16.942 0 1 8400600 + 22960 22402 15618 15909 27025 27025 0.03871807862356036 ILDVTVVYL 9 Unmodified _ILDVTVVYL_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MSMS AL20221201_MKP_PDAC_01 4 517.8117065429688 2 517.810251 1033.60595 NaN NaN NaN NaN NaN NaN NaN 100.22 1 94.049 93.549 94.549 -6.1757 0 0 0 0.096036 1 66966 66966 44.407 0 1 22961 6830 15619 15910 27026 27026 0.09048968422666803 ILDYEMKYFE 10 Unmodified _ILDYEMKYFE_ 0 0 0 ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 ENSG00000182580|ENST00000330394|EPHB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.81884765625 2 675.817947 1349.62134 -0.25971 -0.00017552 1.2438 0.0008406 0.98411 0.00066508 675.8183947308472 70.525 0.25952 70.525 70.402 70.661 0 21 10 3 0 0 0 0.69064 1 39288 39288 3.9444 0.66309 1 687680 22962 9069 15620 15911 27027 27027 -0.03948532842446184 ILEAAGGQIII 11 Unmodified _ILEAAGGQIII_ 0 0 0 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 MSMS AL20221201_MKP_PDAC_01 4 549.333984375 2 549.331882 1096.64921 NaN NaN NaN NaN NaN NaN NaN 43.303 1 38.538 38.038 39.038 -4.7648 0 0 0 0.15644 1 26285 26285 41.956 3.78 1 22963 547 15621 15912 27028 27028 0.10475158199960788 ILEFENPHV 9 Unmodified _ILEFENPHV_ 0 0 0 ENSG00000128581|ENST00000315322|IFT22 ENSG00000128581|ENST00000315322|IFT22 ENSG00000128581|ENST00000315322|IFT22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.289794921875 2 549.284931 1096.55531 0.54264 0.00029806 -1.2181 -0.00066907 -0.67544 -0.00037101 549.2839710928963 66.825 0.3848 66.825 66.679 67.064 0 44 17 3 0 0 0 0.46577 1 37364 37364 9.3474 0.75416 1 5679900 22964 4071 15622 15913 27029 27029 0.010894390976545765 ILEGDESDSL 10 Unmodified _ILEGDESDSL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.1711730957031 3 359.836393 1076.48735 1.4913 0.00053663 -1.7472 -0.00062871 -0.2559 -9.2081E-05 359.83594980115305 91.271 0.5104 85.095 84.925 85.435 -6.1757 45 28 2 0 0 0 0.62068 1 60270 60270 8.9762 8.9762 1 7792800 22965 6155;16276 15623 15914 27030 27030 -0.04783475343651844 ILEHYVVL 8 Unmodified _ILEHYVVL_ 0 0 0 REV__ENST00000481925.1_1_2:220045424-220045941:+|nuORF REV__ENST00000481925.1_1_2:220045424-220045941:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2878723144531 2 493.289485 984.564418 0.51448 0.00025379 0.51288 0.000253 1.0274 0.00050678 493.28958848311584 99.662 0.33232 93.487 93.306 93.638 -6.1757 65 21 5 0 0 0 0.41521 1 66326 66326 42.968 0.87343 1 387140000 + 22966 20716 15624 15915 27031 27031 0.07151832453996576 ILELEILFL 9 Unmodified _ILELEILFL_ 0 0 0 ENST00000502670.1_1_5:176731297-176731390:+|nuORF ENST00000502670.1_1_5:176731297-176731390:+|nuORF ENST00000502670.1_1_5:176731297-176731390:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2300720214844 3 368.230126 1101.66855 0.06435 2.3696E-05 -2.466 -0.00090805 -2.4016 -0.00088435 368.22936158137486 34.43 0.29935 34.458 34.307 34.606 0.027401 20 13 2 0 0 0 0.53557 1 18132 18132 5.2969 0.39987 1 1408200 22967 14455 15625 15916 27032 27032 0.12178114490848202 ILELHQWIWRR 11 Unmodified _ILELHQWIWRR_ 0 0 0 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7466430664062 3 517.296527 1548.86775 0.32353 0.00016736 -3.5991 -0.0018618 -3.2756 -0.0016944 517.2961330337571 53.258 0.30317 52.806 52.742 53.046 -0.45173 24 14 3 0 0 0 0.306 1 28845 28845 0.45452 0.12525 1 1417500 + 22968 21012 15626 15917 27033 27033 0.11527187562091967 ILELHQWIWRR 11 Unmodified _ILELHQWIWRR_ 0 0 0 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 REV__nc|ENSG00000149646|Q96M20-3|CNBD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 517.296527 1548.86775 0.4693 0.00024277 -6.8851 -0.0035617 -6.4158 -0.0033189 517.2927045576918 52.955 0.30172 52.892 52.742 53.044 -0.063423 0.042736 -0.00020718 NaN 0.45452 35 14 4 NaN NaN NaN NaN 0 NaN NaN 0 6004400 + 22969 21012 15626 15917 0.11527187562091967 ILESTKFA 8 Unmodified _ILESTKFA_ 0 0 0 REV__ENSG00000072041|ENST00000266682|SLC6A15 REV__ENSG00000072041|ENST00000266682|SLC6A15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7583312988281 2 454.758018 907.501483 NaN NaN NaN NaN NaN NaN NaN 66.905 1 66.905 66.405 67.405 0 0 0 0 0.9489 1 37314 37314 10.824 0 1 + 22970 17504 15627 15918 27034 27034 0.04403266665951833 ILFDGILAPR 10 Unmodified _ILFDGILAPR_ 0 0 0 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8330078125 2 557.834591 1113.65463 0.99476 0.00055491 -1.6895 -0.00094244 -0.69471 -0.00038754 557.8340190016185 81.147 0.25336 80.654 80.539 80.792 -0.49247 30 18 2 0 0 0 0.1028 1 44407 44407 46.021 8.047 1 2613700 + 22971 19731 15628 15919 27035 27035 0.10234881782434968 ILFDGILAPR 10 Unmodified _ILFDGILAPR_ 0 0 0 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3364868164062 2 557.834591 1113.65463 0.458 0.00025549 0.15219 8.4898E-05 0.6102 0.00034039 557.8345318486653 77.615 0.33299 77.665 77.441 77.774 0.05011 31 13 3 0 0 0 0.54684 1 42786 42786 13.906 0.86358 1 7297300 + 22972 19731 15628 15919 27036 27036 0.10234881782434968 ILFDTKTGGF 10 Unmodified _ILFDTKTGGF_ 0 0 0 REV__nc|ENSG00000173083|Q9Y251-2|HPSE REV__nc|ENSG00000173083|Q9Y251-2|HPSE MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.52978515625 3 366.865847 1097.57571 2.085 0.00076491 -0.99749 -0.00036594 1.0875 0.00039897 367.2008391123358 58.948 0.37681 52.873 52.635 53.011 -6.0745 31 20 2 0 0 0 0.23195 1 37687 37687 8.9762 1.8745 1 12290000 + 22973 29788 15629 15920 27037 27037 0.030826097574845335 ILFGHENRV 9 Unmodified _ILFGHENRV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5 nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2013244628906 3 362.201452 1083.58253 NaN NaN NaN NaN NaN NaN NaN 32.833 1 32.863 32.363 33.363 0.029743 0 0 0 0.49196 1 17252 17252 15.739 3.2071 1 22974 1011 15630 15921 27038 27038 0.04407967428710435 ILFTKATWIL 10 Unmodified _ILFTKATWIL_ 0 0 0 ENST00000584430.1_1_18:856598-856898:+|nuORF ENST00000584430.1_1_18:856598-856898:+|nuORF ENST00000584430.1_1_18:856598-856898:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8265991210938 2 603.368267 1204.72198 0.090751 5.4756E-05 0.67744 0.00040874 0.76819 0.0004635 603.3694362800212 79.703 0.24476 79.758 79.577 79.821 0.05497 17 9 2 0 0 0 0.23325 1 43955 43955 6.2058 0 1 1340000 22975 15594 15631 15922 27039 27039 0.1278091199337723 ILFWNTGTL 9 Unmodified _ILFWNTGTL_ 0 0 0 ENSG00000215529|ENST00000400522|EFCAB8 ENSG00000215529|ENST00000400522|EFCAB8 ENSG00000215529|ENST00000400522|EFCAB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7939453125 2 532.792392 1063.57023 0.9562 0.00050946 0.88716 0.00047267 1.8434 0.00098213 532.7930748904464 69.025 0.81062 62.85 62.383 63.193 -6.1757 99 44 3 0 0 0 0.015445 3 45204 44961;45079;45204 68.081 34.402 1 77640000 22976 10533 15632 15923 27040;27041;27042 27042 0.04098930965665204 ILFYIFITI 9 Unmodified _ILFYIFITI_ 0 0 0 ENSG00000065308|ENST00000182527|TRAM2 ENSG00000065308|ENST00000182527|TRAM2 ENSG00000065308|ENST00000182527|TRAM2 MSMS AL20221201_MKP_PDAC_01 4 571.84912109375 2 571.846636 1141.67872 NaN NaN NaN NaN NaN NaN NaN 22.096 1 19.361 18.861 19.861 -2.7348 0 0 0 0.22437 1 11872 11872 18.135 0 1 22977 897 15633 15924 27043 27043 0.11354722216083246 ILGDILLSA 9 Unmodified _ILGDILLSA_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7822265625 2 457.781493 913.548434 0.95315 0.00043633 -0.050893 -2.3298E-05 0.90226 0.00041304 457.78153893684976 83.992 0.52119 77.817 77.567 78.088 -6.1757 47 27 2 0 0 0 0.023164 1 55290 55290 60.39 2.9182 1 13222000 22978 9420 15634 15925 27044 27044 0.08820126217096913 ILGHFPRA 8 Unmodified _ILGHFPRA_ 0 0 0 ENSG00000104356|ENST00000401707|POP1 ENSG00000104356|ENST00000401707|POP1 ENSG00000104356|ENST00000401707|POP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7673645019531 2 455.766512 909.518471 0.91846 0.0004186 1.3791 0.00062854 2.2975 0.0010471 455.76695843526784 71.733 0.43673 71.772 71.557 71.994 0.039024 52 20 4 0 0 0 0.80676 1 39545 39545 2.5775 0 1 13299000 22979 2198 15635 15926 27045 27045 0.06009232062422143 ILGKFVPPIP 10 Unmodified _ILGKFVPPIP_ 0 0 0 ENSG00000132436|ENST00000433017|FIGNL1;nc|ENSG00000132436|Q6PIW4-2|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.82958984375 2 540.844428 1079.6743 NaN NaN NaN NaN NaN NaN NaN 103.54 1 103.49 102.99 103.99 -0.047928 0 0 0 0.96627 1 57500 57500 4.3292 0.38484 1 22980 4406 15636 15927 27046 27046 0.13765257793193086 ILGLARKQRP 10 Unmodified _ILGLARKQRP_ 0 0 0 REV__ENSG00000269526|ENST00000602168|ERVV-1 REV__ENSG00000269526|ENST00000602168|ERVV-1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.2252197265625 3 384.583897 1150.72986 1.1655 0.00044824 -1.0813 -0.00041584 0.084238 3.2396E-05 384.5834675951277 39.561 0.55703 35.11 34.796 35.353 -4.4509 56 34 2 0 0 0 0.23723 1 23391 23391 1.9064 0 1 20653000 + 22981 24621 15637 15928 27047 27047 0.16052484033502878 ILGLIKLIPA 10 Unmodified _ILGLIKLIPA_ 0 0 0 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1051.230712890625 1 1050.72853 1049.72125 0.72529 0.00076209 0.48351 0.00050803 1.2088 0.0012701 1051.7358726279815 50.211 0.2596 49.818 49.732 49.992 -0.3923 16 12 2 0 0 0 0.24007 1 27118 27118 0.45834 0.45834 1 3187700 + 22982 29866 15638 15929 27048 27048 0.19838117344329476 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 924.5203857421875 1 924.518931 923.511654 0.1155 0.00010678 0.50049 0.00046272 0.61599 0.00056949 924.519439659644 65.244 0.51008 64.76 64.511 65.021 -0.48428 39 23 2 0 0 0 0.038285 2 35630 35533;35630 50.855 18.738 1 1590000 22983 496 15639 15930 27049;27050 27050 0.046838743911848724 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7631225585938 2 462.763104 923.511654 0.09695 4.4865E-05 0.054115 2.5042E-05 0.15106 6.9907E-05 462.76304164224007 65.33 0.77547 64.846 64.491 65.267 -0.48428 59 35 2 0 0 0 0.0094915 2 35635 35635;35745 81.864 42.872 1 1708000 22984 496 15639 15930 27051;27052 27051 0.046838743911848724 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7628479003906 2 462.763104 923.511654 0.7148 0.00033078 -0.057851 -2.6771E-05 0.65695 0.00030401 462.76307458235124 64.841 0.7978 64.841 64.443 65.241 7.6294E-06 63 39 2 0 0 0 0.0081063 3 35528 35415;35528;35661 93.883 53.383 1 4477400 22985 496 15639 15930 27053;27054;27055 27054 0.046838743911848724 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 924.517578125 1 924.518931 923.511654 0.90123 0.0008332 0.56186 0.00051945 1.4631 0.0013527 924.5195834615178 64.781 0.69923 64.781 64.501 65.2 7.6294E-06 58 34 2 0 0 0 0.0090851 3 35478 35478;35581;35691 85.357 49.313 1 3204100 22986 496 15639 15930 27056;27057;27058 27056 0.046838743911848724 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.5185546875 1 924.518931 923.511654 1.1204 0.0010358 -0.4284 -0.00039607 0.69197 0.00063974 924.5186613205758 71.567 0.51154 65.391 65.045 65.556 -6.1757 46 25 2 0 0 0 0.000405 3 46756 46625;46756;46892 146.01 84.65 1 32450000 22987 496 15639 15930 27059;27060;27061 27060 0.046838743911848724 ILGPPPPSF 9 Unmodified _ILGPPPPSF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3;nc|ENSG00000280987|P43243-2|MATR3;ENST00000502422.5_1_5:138651717-138665081:+|nuORF;ENST00000511978.5_1_5:138651425-138655027:+|nuORF;ENST00000509918.5_1_5:138651425-138657594:+|nuORF ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7640380859375 2 462.763104 923.511654 1.1344 0.00052497 -0.065396 -3.0263E-05 1.069 0.0004947 462.7631075367843 71.544 0.75517 65.369 65.026 65.781 -6.1757 82 39 3 0 0 0 3.0991E-10 3 46810 46688;46810;46975 170.4 106.83 1 49541000 22988 496 15639 15930 27062;27063;27064 27063 0.046838743911848724 ILGRCECSY 9 Unmodified _ILGRCECSY_ 0 0 0 REV__ENSG00000121281|ENST00000673801|ADCY7 REV__ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.739501953125 2 522.23607 1042.45759 0.34191 0.00017856 -0.78525 -0.00041008 -0.44333 -0.00023152 522.2359016995703 90.788 0.61221 90.293 90.051 90.663 -0.49458 183 38 6 0 0 0 0.55144 1 49592 49592 4.3292 0 1 33046000 + 22989 19285 15640 15931 27065 27065 -0.06194409094337061 ILGTARSL 8 Unmodified _ILGTARSL_ 0 0 0 REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.7579650878906 2 415.758352 829.502152 0.91608 0.00038087 0.89969 0.00037405 1.8158 0.00075492 415.75822558573793 42.199 0.36047 37.515 37.317 37.678 -4.6846 36 22 2 0 0 0 0.52066 1 25445 25445 32.786 3.7041 1 10770000 + 22990 26186 15641 15932 27066 27066 0.08058106105670504 ILGTARSL 8 Unmodified _ILGTARSL_ 0 0 0 REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 415.758352 829.502152 -0.29779 -0.00012381 3.3311 0.0013849 3.0333 0.0012611 415.7582852560536 37.183 0.13234 37.204 37.108 37.24 0.021545 -0.1356 0.0015371 NaN 32.786 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 555790 + 22991 26186 15641 15932 0.08058106105670504 ILGTARSL 8 Unmodified _ILGTARSL_ 0 0 0 REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF REV__ENST00000374680.3_1_6:33168320-33168437:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 415.758352 829.502152 0.91608 0.00038087 0.89969 0.00037405 1.8158 0.00075492 415.75822558573793 42.199 0.36047 37.515 37.317 37.678 -4.6846 0.17498 -0.00048463 NaN 32.786 36 22 2 NaN NaN NaN NaN 0 NaN NaN 0 10770000 + 22992 26186 15641 15932 0.08058106105670504 ILGVPPSG 8 Unmodified _ILGVPPSG_ 0 0 0 REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MSMS AL20221201_MKP_PDAC_01 4 370.2223205566406 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 78.76 1 72.584 72.084 73.084 -6.1757 0 0 0 0.77249 1 51576 51576 24.674 5.2349 1 + 22993 22316 15642 15933 27067 27067 0.04791343294289163 ILGYRRGSNL 10 Unmodified _ILGYRRGSNL_ 0 0 0 REV__ENSG00000033050|ENST00000287844|ABCF2 REV__ENSG00000033050|ENST00000287844|ABCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3318481445312 2 574.830372 1147.64619 1.2034 0.00069173 -1.772 -0.0010186 -0.56868 -0.00032689 574.8290254556404 60.748 0.4399 54.601 54.369 54.809 -6.1478 51 23 3 0 0 0 0.20962 1 39033 39033 32.786 13.529 1 52792000 + 22994 17152 15643 15934 27068 27068 0.0782732786581164 ILHCSLAGY 9 Unmodified _ILHCSLAGY_ 0 0 0 REV__ENST00000301067.11_1_12:49448325-49448779:-|nuORF REV__ENST00000301067.11_1_12:49448325-49448779:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7500610351562 2 488.74967 975.484787 0.56714 0.00027719 -0.68026 -0.00033248 -0.11312 -5.5289E-05 488.7495159716215 53.245 0.39393 47.44 47.234 47.628 -5.8042 45 24 2 0 0 0 0.32871 1 33704 33704 15.847 1.2655 1 43142000 + 22995 25315 15644 15935 27069 27069 -0.00393557491656793 ILHDDEVTV 9 Unmodified _ILHDDEVTV_ 0 0 0 ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1 ENST00000487304.6_1_15:69745218-69746066:+|nuORF ENST00000487304.6_1_15:69745218-69746066:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.766845703125 2 520.766571 1039.51859 0.60209 0.00031355 -0.10053 -5.2352E-05 0.50156 0.0002612 520.7664332716117 36.981 0.38432 36.981 36.775 37.159 0 65 18 5 0 0 0 0.0086179 2 19696 19593;19696 89.427 38.572 1 82109000 22996 4974 15645 15936 27070;27071 27071 0.00041142481086353655 ILHDDEVTV 9 Unmodified _ILHDDEVTV_ 0 0 0 ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1 ENST00000487304.6_1_15:69745218-69746066:+|nuORF ENST00000487304.6_1_15:69745218-69746066:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.76708984375 2 520.766571 1039.51859 -0.2822 -0.00014696 0.5901 0.00030731 0.30791 0.00016035 520.7668775662966 36.911 0.14756 36.932 36.836 36.984 0.021545 10 6 2 0 0 0 0.10734 1 19590 19590 32.305 15.193 1 1809700 22997 4974 15645 15936 27072 27072 0.00041142481086353655 ILHDDEVTV 9 Unmodified _ILHDDEVTV_ 0 0 0 ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1 ENST00000487304.6_1_15:69745218-69746066:+|nuORF ENST00000487304.6_1_15:69745218-69746066:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7685546875 2 520.766571 1039.51859 0.85624 0.0004459 0.070937 3.6942E-05 0.92718 0.00048285 520.7666128073078 43.033 0.51389 38.268 37.991 38.505 -4.7648 98 33 4 0 0 0 0.010877 3 25930 25930;26067;26218 77.984 43.583 1 259910000 22998 4974 15645 15936 27073;27074;27075 27073 0.00041142481086353655 ILHDRLYYL 9 Unmodified _ILHDRLYYL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.5608825683594 3 402.560758 1204.66044 0.51288 0.00020646 -0.2873 -0.00011566 0.22557 9.0807E-05 402.5605455646883 50.709 0.21593 50.655 50.55 50.766 -0.053871 25 10 3 0 0 0 0.37578 1 27426 27426 13.615 4.6386 1 2730900 22999 3184 15646 15937 27076 27076 0.06629980294064808 ILHDRLYYL 9 Unmodified _ILHDRLYYL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 402.560758 1204.66044 0.22078 8.8876E-05 0.49103 0.00019767 0.71181 0.00028655 402.56098730070767 51.064 0.16124 50.651 50.597 50.758 -0.41351 -0.002114 0.00049298 NaN 13.615 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1153400 23000 3184 15646 15937 0.06629980294064808 ILHEHHIFL 9 Unmodified _ILHEHHIFL_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2207336425781 3 386.885464 1157.63456 1.6752 0.00064809 -0.60036 -0.00023227 1.0748 0.00041582 386.885395937348 90.605 0.33276 84.429 84.275 84.608 -6.1757 58 19 4 0 0 0 0.018301 2 59812 59812;59936 65.235 50.278 1 64579000 23001 2385 15647 15938 27077;27078 27077 0.062051308424543095 ILHELISEL 9 Unmodified _ILHELISEL_ 0 0 0 REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.8111572265625 2 533.810782 1065.60701 0.48198 0.00025729 0.37656 0.00020101 0.85854 0.0004583 533.810939103436 67.286 0.37428 67.286 67.108 67.483 0 45 15 4 0 0 0 0.078314 1 37590 37590 50.855 3.9342 1 8279700 + 23002 28548 15648 15939 27079 27079 0.07683182791561194 ILHENFTTV 9 Unmodified _ILHENFTTV_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;nc|ENSG00000135720|O43237-2|DYNC1LI2;ENST00000565532.5_1_16:66762088-66770076:-|nuORF ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2843627929688 2 537.284931 1072.55531 1.042 0.00055988 -0.26287 -0.00014124 0.77917 0.00041864 537.2846182860136 50.251 0.35219 44.712 44.502 44.854 -5.5391 42 22 3 0 0 0 0.05447 1 31485 31485 43.858 20.71 1 20785000 23003 4734 15649 15940 27080 27080 0.021934390976412033 ILHHEPTYL 9 Unmodified _ILHHEPTYL_ 0 0 0 REV__ENST00000519356.1_1_8:33331766-33367302:-|nuORF REV__ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5335998535156 3 374.869591 1121.58694 -0.1374 -5.1507E-05 0.093605 3.509E-05 -0.043794 -1.6417E-05 374.8699385838334 37.462 0.38328 37.191 36.992 37.375 -0.27133 58 15 6 0 0 0 0.54213 1 19757 19757 4.897 1.9018 1 15665000 + 23004 19682 15650 15941 27081 27081 0.031014318516099593 ILHPTHLPYG 10 Unmodified _ILHPTHLPYG_ 0 0 0 REV__ENSG00000196110|ENST00000591998|ZNF699 REV__ENSG00000196110|ENST00000591998|ZNF699 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.29443359375 2 574.316566 1146.61858 1.1622 0.00066748 2.579 0.0014812 3.7412 0.0021486 574.3179734994146 89.885 0.32218 83.709 83.526 83.848 -6.1757 31 17 2 0 0 0 0.22667 1 59409 59409 10.824 0 1 10782000 + 23005 23788 15651 15942 27082 27082 0.05113424605565342 ILIHQQIEL 9 Unmodified _ILIHQQIEL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8319702148438 2 553.832049 1105.64954 0.47244 0.00026165 -0.067938 -3.7627E-05 0.4045 0.00022403 553.8319675089822 58.157 0.34812 57.667 57.492 57.84 -0.48974 53 16 4 0 0 0 0.06187 1 31573 31573 42.095 4.1206 1 29228000 23006 9647 15652 15943 27083 27083 0.10094577919812764 ILIHQQIEL 9 Unmodified _ILIHQQIEL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8326416015625 2 553.832049 1105.64954 0.92322 0.00051131 0.26366 0.00014603 1.1869 0.00065734 553.832181550731 57.832 0.27802 57.765 57.593 57.871 -0.066036 33 13 3 0 0 0 0.026094 1 31435 31435 57.471 19.497 1 7596200 23007 9647 15652 15943 27084 27084 0.10094577919812764 ILIHQQIEL 9 Unmodified _ILIHQQIEL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8330078125 2 553.832049 1105.64954 1.3822 0.0007655 -0.24535 -0.00013588 1.1368 0.00062961 553.8317743369005 63.935 0.81188 57.759 57.487 58.298 -6.1757 106 43 3 0 0 0 0.015445 1 41269 41269 68.081 9.4019 1 85673000 23008 9647 15652 15943 27085 27085 0.10094577919812764 ILIHQQIEL 9 Unmodified _ILIHQQIEL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 553.832049 1105.64954 0.72271 0.00040026 -1.679 -0.00092987 -0.95626 -0.00052961 553.8308981267239 57.698 0.188 57.698 57.657 57.845 0 -0.024746 -0.0017621 NaN 68.081 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1334400 23009 9647 15652 15943 0.10094577919812764 ILIKHLVKV 9 Unmodified _ILIKHLVKV_ 0 0 0 ENSG00000165895|ENST00000298815|ARHGAP42 ENSG00000165895|ENST00000298815|ARHGAP42 ENSG00000165895|ENST00000298815|ARHGAP42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.9181518554688 3 354.918105 1061.73249 1.509 0.00053557 -0.47452 -0.00016842 1.0345 0.00036716 354.91785009613125 83.005 0.37489 76.829 76.589 76.964 -6.1757 32 20 2 0 0 0 0.11784 1 54541 54541 31.268 6.2774 1 9145400 23010 7401 15653 15944 27086 27086 0.20408939438448215 ILILLTKQL 9 Unmodified _ILILLTKQL_ 0 0 0 REV__ENSG00000095110|ENST00000534921|NXPE1 REV__ENSG00000095110|ENST00000534921|NXPE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2661743164062 3 352.245999 1053.71617 NaN NaN NaN NaN NaN NaN NaN 101.37 1 101.33 100.83 101.83 -0.04216 0 0 0 0.86004 1 56318 56318 0.26902 0.1097 1 + 23011 17936 15654 15945 27087 27087 0.19145813481713958 ILIRDDPKLL 10 Unmodified _ILIRDDPKLL_ 0 0 0 REV__nc|ENSG00000132321|Q86XH1-5|IQCA1 REV__nc|ENSG00000132321|Q86XH1-5|IQCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2506713867188 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 65.273 1 65.273 64.773 65.773 0 0 0 0 0.99008 1 36410 36410 1.7423 0.52744 1 + 23012 19841 15655 15946 27088 27088 0.14403109016711824 ILIRKFKKSK 10 Unmodified _ILIRKFKKSK_ 0 0 0 ENST00000309703.10_2_4:113181974-113186924:+|nuORF ENST00000309703.10_2_4:113181974-113186924:+|nuORF ENST00000309703.10_2_4:113181974-113186924:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.9298095703125 2 630.929357 1259.84416 0.72701 0.00045869 -0.98104 -0.00061896 -0.25403 -0.00016027 630.928702149474 81.01 0.26517 74.834 74.696 74.961 -6.1757 24 14 2 0 0 0 0.68719 1 53143 53143 4.3292 0 1 15457000 23013 11665 15656 15947 27089 27089 0.2246337379558554 ILIRLHKRWKQ 11 Unmodified _ILIRLHKRWKQ_ 0 0 0 REV__ENST00000524021.1_1_8:33310907-33318970:-|nuORF REV__ENST00000524021.1_1_8:33310907-33318970:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 745.9755859375 2 745.975162 1489.93577 NaN NaN NaN NaN NaN NaN NaN 42.56 1 37.875 37.375 38.375 -4.6846 0 0 0 0.94307 1 25728 25728 0.30703 0 1 + 23014 28249 15657 15948 27090 27090 0.21040057212780994 ILIVMILRH 9 Unmodified _ILIVMILRH_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9069213867188 3 369.907212 1106.69981 0.42522 0.00015729 -1.3561 -0.00050165 -0.93093 -0.00034436 369.9066213731485 36.82 0.24696 36.82 36.69 36.936 0 21 11 2 0 0 0 0.61855 1 19522 19522 0.23584 0.23584 1 8814000 23015 9951 15658 15949 27091 27091 0.15072409043955304 ILIYHTINTSP 11 Unmodified _ILIYHTINTSP_ 0 0 0 ENST00000370331.5_1_1:93201975-93202140:-|nuORF ENST00000370331.5_1_1:93201975-93202140:-|nuORF ENST00000370331.5_1_1:93201975-93202140:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3560791015625 2 636.353345 1270.69214 3.2092 0.0020422 -1.3686 -0.00087091 1.8407 0.0011713 636.3525607666372 99.821 1.4853 99.784 98.369 99.855 -0.036301 125 54 3 0 0 0 0.42108 2 55154 55154;55252 20.415 8.1739 1 56253000 23016 12327 15659 15950 27092;27093 27092 0.06761928257378713 ILKDEFYHEE 10 Unmodified _ILKDEFYHEE_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.5487976074219 3 441.546954 1321.61903 NaN NaN NaN NaN NaN NaN NaN 17.148 1 17.149 16.649 17.649 0.0010548 0 0 0 1.0019 1 8505 8505 0.15932 0 1 + 23017 24033 15660 15951 27094 27094 -0.028912452558870427 ILKLVLHCH 9 Unmodified _ILKLVLHCH_ 0 0 0 REV__nc|ENSG00000007516|O94812-5|BAIAP3 REV__nc|ENSG00000007516|O94812-5|BAIAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2213439941406 3 359.219678 1074.63721 1.4856 0.00053365 2.0807 0.00074742 3.5663 0.0012811 359.2203885135779 99.96 0.23331 93.784 93.691 93.924 -6.1757 33 16 3 0 0 0 0.10925 1 66710 66710 22.736 0 1 32659000 + 23018 17012 15661 15952 27095 27095 0.10287262975771228 ILKMILGKL 9 Unmodified _ILKMILGKL_ 0 0 0 REV__ENST00000361804.4_1_10:112356281-112357923:+|nuORF REV__ENST00000361804.4_1_10:112356281-112357923:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.853271484375 2 514.848656 1027.68276 3.5939 0.0018503 3.0485 0.0015695 6.6424 0.0034199 514.8501370960896 97.959 0.36649 97.941 97.733 98.099 -0.018188 36 12 4 0 0 0 0.53666 1 54494 54494 5.2307 0 1 10345000 + 23019 25941 15662 15953 27096 27096 0.17002488438174623 ILKQIEYRNLF 11 Unmodified _ILKQIEYRNLF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.61376953125 3 479.613522 1435.81874 0.32201 0.00015444 0.38345 0.00018391 0.70546 0.00033835 479.6136767186519 62.093 0.27475 62.06 61.906 62.181 -0.032787 49 13 5 0 0 0 0.69155 1 33868 33868 5.0475 2.4163 1 35803000 23020 1951 15663 15954 27097 27097 0.11825854482503928 ILKQIEYRNLF 11 Unmodified _ILKQIEYRNLF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.9479675292969 3 479.613522 1435.81874 1.2562 0.00060251 0.048523 2.3272E-05 1.3048 0.00062578 479.61354314032974 86.316 0.5084 80.141 79.794 80.303 -6.1757 53 27 2 0 0 0 0.71259 1 56850 56850 3.0723 0.22898 1 22865000 23021 1951 15663 15954 27098 27098 0.11825854482503928 ILKQNDFS 8 Unmodified _ILKQNDFS_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2795104980469 2 482.758549 963.502546 0.76738 0.00037046 2.6454 0.0012771 3.4128 0.0016476 482.7603404303797 62.159 0.11126 61.671 61.57 61.681 -0.48764 7 4 2 0 0 0 8.7369 1 33827 33827 14.582 0 1 475670 23022 403 15664 15955 27099 27099 0.019334810348595965 ILKQRRDYF 9 Unmodified _ILKQRRDYF_ 0 0 0 REV__ENSG00000154485|ENST00000368808|MMP21 REV__ENSG00000154485|ENST00000368808|MMP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.9072875976562 3 413.571657 1237.69314 0.94562 0.00039108 2.2981 0.00095044 3.2437 0.0013415 413.5725423074965 31.899 0.25287 28.203 28.086 28.339 -3.6958 20 13 2 0 0 0 0.46162 1 18122 18122 9.544 2.5069 1 10963000 + 23023 21231 15665 15956 27100 27100 0.08380187416923945 ILKSAYFSY 9 Unmodified _ILKSAYFSY_ 0 0 0 ENST00000498365.1_1_2:190327217-190328592:+|nuORF ENST00000498365.1_1_2:190327217-190328592:+|nuORF ENST00000498365.1_1_2:190327217-190328592:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.25634765625 2 546.292225 1090.5699 0.39827 0.00021757 -2.8281 -0.001545 -2.4298 -0.0013274 546.2913896553279 50.638 0.2054 50.638 50.518 50.724 0 23 9 3 0 0 0 0.19891 1 27884 27884 11.64 2.8949 1 5552900 23024 14422 15666 15957 27101 27101 0.028235112458105505 ILKWKFAYL 9 Unmodified _ILKWKFAYL_ 0 0 0 nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5725402832031 3 394.574227 1180.70085 1.4274 0.0005632 -0.45303 -0.00017875 0.97432 0.00038444 394.57372655442816 37.201 0.33615 32.917 32.736 33.072 -4.2835 32 20 2 0 0 0 0.39863 1 21741 21741 8.1555 0.54658 1 6621500 23025 2145 15667 15958 27102 27102 0.11772946684527597 ILLAEEWL 8 Unmodified _ILLAEEWL_ 0 0 0 ENST00000432242.5_1_2:98833411-98885811:+|nuORF;ENST00000448638.5_1_2:98797652-98853199:+|nuORF;nc|ENSG00000168658|Q502W6-5|VWA3B;ENST00000495571.5_1_2:98833411-98928809:+|nuORF;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B;nc|ENSG00000168658|Q502W6-7|VWA3B ENST00000432242.5_1_2:98833411-98885811:+|nuORF ENST00000432242.5_1_2:98833411-98885811:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7822570800781 2 493.781493 985.548434 0.14651 7.2345E-05 -0.87495 -0.00043204 -0.72844 -0.00035969 493.78170196331587 93.226 0.92346 87.05 86.712 87.636 -6.1757 137 62 3 0 0 0 0.57408 1 61652 61652 28.173 3.4993 1 92766000 23026 7788 15668 15959 27103 27103 0.05508126217080189 ILLAEVPTM 9 Oxidation (M) _ILLAEVPTM(Oxidation (M))_ ILLAEVPTM(1) ILLAEVPTM(54) 0 0 1 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7820739746094 2 501.780636 1001.54672 0.38442 0.0001929 0.59891 0.00030052 0.98333 0.00049342 501.7810463678037 62.186 0.30164 61.699 61.529 61.831 -0.48764 31 13 3 0 0 0 0.03327 1 33864 33864 53.576 26.692 1 3702000 23027 8100 15669 15960 27104 27104 1372 0.046007491368413866 ILLAEVPTM 9 Unmodified _ILLAEVPTM_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7841491699219 2 493.783179 985.551804 1.1724 0.0005789 -0.60632 -0.00029939 0.56605 0.00027951 493.7830878395215 88.388 0.41515 82.212 82.043 82.459 -6.1757 37 22 2 0 0 0 0.087258 2 58269 58269;58429 36.044 14.298 1 11069000 23028 8100 15669 15961 27105;27106 27105 0.058450529994502176 ILLARLPWPS 10 Unmodified _ILLARLPWPS_ 0 0 0 REV__ENST00000221455.7_2_19:45555359-45555425:+|nuORF REV__ENST00000221455.7_2_19:45555359-45555425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2410583496094 3 389.241248 1164.70191 0.211 8.2132E-05 0.82998 0.00032306 1.041 0.00040519 389.2414460162524 39.556 0.39122 39.567 39.344 39.736 0.011452 42 18 3 0 0 0 0.7191 1 20998 20998 0.77653 0.078866 1 5530600 + 23029 24761 15670 15962 27107 27107 0.12615161053417978 ILLDIKTRL 9 Unmodified _ILLDIKTRL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2417602539062 3 362.241137 1083.70158 0.73273 0.00026543 0.19471 7.0531E-05 0.92744 0.00033596 362.2411985921733 57.851 0.39662 57.785 57.593 57.99 -0.066036 51 19 3 0 0 0 0.017075 2 31446 31446;31554 61.09 11.563 1 50170000 + 23030 176 15671 15963 27108;27109 27108 0.16307741333571357 ILLDIKTRL 9 Unmodified _ILLDIKTRL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.858642578125 2 542.858067 1083.70158 0.81047 0.00043997 -0.35667 -0.00019362 0.4538 0.00024635 542.8578750847904 57.834 0.25505 57.768 57.655 57.91 -0.066036 29 12 3 0 0 0 0.017075 1 31477 31477 66.457 12.624 1 5252100 + 23031 176 15671 15963 27110 27110 0.16307741333571357 ILLDIKTRL 9 Unmodified _ILLDIKTRL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2418518066406 3 362.241137 1083.70158 1.5023 0.0005442 0.015412 5.583E-06 1.5177 0.00054979 362.24114423461873 81.821 0.95712 75.646 75.167 76.124 -6.1757 140 53 3 0 0 0 0.036857 5 53620 53487;53620;53741;53873;54001 40.725 5.9881 1 50647000 + 23032 176 15671 15963 27111;27112;27113;27114;27115 27112 0.16307741333571357 ILLDKTLR 8 Unmodified _ILLDKTLR_ 0 0 0 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 ENSG00000137819|ENST00000395407|PAQR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3168029785156 2 486.316035 970.617516 0.99757 0.00048513 -0.16933 -8.2347E-05 0.82824 0.00040279 486.3159756816752 57.845 0.25505 57.779 57.655 57.91 -0.066036 21 12 2 0 0 0 0.21098 1 31485 31485 68.081 2.8457 1 3137800 23033 4975 15672 15964 27116 27116 0.13103210236670293 ILLDRLLYL 9 Unmodified _ILLDRLLYL_ 0 0 0 ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.360595703125 2 566.360442 1130.70633 0.89976 0.00050959 -0.0030869 -1.7483E-06 0.89667 0.00050784 566.360133342625 100.69 0.11143 94.511 94.445 94.556 -6.1757 19 7 3 0 0 0 0.021948 1 67409 67409 61.602 17.744 1 101310000 23034 5487 15673 15965 27117 27117 0.1462062547630012 ILLDWHFQQC 10 Unmodified _ILLDWHFQQC_ 0 0 0 REV__nc|ENSG00000198022|A6NJ88|SAGE2P REV__nc|ENSG00000198022|A6NJ88|SAGE2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8819885253906 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 83.086 1 82.589 82.089 83.089 -0.49751 0 0 0 0.98914 1 45484 45484 0.77653 0 1 + 23035 29895 15674 15966 27118 27118 -0.016068539630396117 ILLEHIIMC 9 Carbamidomethyl (C) _ILLEHIIMC(Carbamidomethyl (C))_ ILLEHIIMC(1) ILLEHIIMC(42) 0 1 0 ENSG00000129933|ENST00000262815|MAU2;ENST00000587938.7_1_19:19453454-19455783:+|nuORF ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MSMS AL20221201_MKP_PDAC_01 4 571.3089599609375 2 571.309038 1140.60352 NaN NaN NaN NaN NaN NaN NaN 92.145 1 85.97 85.47 86.47 -6.1757 0 0 0 0.10545 1 60930 60930 42.095 11.87 1 23036 4168 15675 15967 27119 27119 419 0.0388447342170366 ILLEHKVVL 9 Unmodified _ILLEHKVVL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.0703430175781 3 355.233982 1062.68012 0.28811 0.00010235 0.5734 0.00020369 0.86151 0.00030604 355.2340809929666 48.258 0.31941 48.219 48.026 48.346 -0.038643 34 15 3 0 0 0 0.18482 1 26013 26013 18.146 0.7037 1 5540400 23037 2724 15676 15968 27120 27120 0.15128356304853696 ILLEHNYAL 9 Unmodified _ILLEHNYAL_ 0 0 0 ENSG00000099381|ENST00000262519|SETD1A ENSG00000099381|ENST00000262519|SETD1A ENSG00000099381|ENST00000262519|SETD1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.3035888671875 2 543.303124 1084.5917 0.18908 0.00010273 1.0175 0.00055282 1.2066 0.00065555 543.3038322922002 55.36 0.27297 54.882 54.733 55.005 -0.47798 20 12 2 0 0 0 0.036857 1 30026 30026 51.63 15.503 1 2985000 23038 1699 15677 15969 27121 27121 0.05278315994382865 ILLEMIHSI 9 Unmodified _ILLEMIHSI_ 0 0 0 nc|ENSG00000112208|O95816-2|BAG2;ENSG00000112208|ENST00000370693|BAG2 nc|ENSG00000112208|O95816-2|BAG2 nc|ENSG00000112208|O95816-2|BAG2 MSMS AL20221201_MKP_PDAC_01 4 534.810302734375 2 534.809728 1067.6049 NaN NaN NaN NaN NaN NaN NaN 97.83 1 91.655 91.155 92.155 -6.1757 0 0 0 0.035065 1 64844 64844 64.236 22.142 1 23039 2869 15678 15970 27122 27122 0.07380430782131953 ILLERGQLL 9 Unmodified _ILLERGQLL_ 0 0 0 REV__ENST00000372004.7_1_20:46254139-46254205:+|nuORF REV__ENST00000372004.7_1_20:46254139-46254205:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.8346557617188 2 527.834591 1053.65463 NaN NaN NaN NaN NaN NaN NaN 94.824 1 88.649 88.149 89.149 -6.1757 0 0 0 0.17247 1 62809 62809 34.102 1.3168 1 + 23040 26101 15679 15971 27123 27123 0.12994881782424272 ILLESIQEL 9 Unmodified _ILLESIQEL_ 0 0 0 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.3092651367188 2 529.310615 1056.60668 0.44742 0.00023682 -1.7956 -0.00095044 -1.3482 -0.00071362 529.3093464854016 50.254 0.29319 50.254 50.096 50.389 0 27 12 3 0 0 0 0.06294 1 27669 27669 41.84 0 1 5923200 + 23041 29561 15680 15972 27124 27124 0.08063763071709218 ILLFLKYF 8 Unmodified _ILLFLKYF_ 0 0 0 REV__nc|ENSG00000204977|O60858-3|TRIM13 REV__nc|ENSG00000204977|O60858-3|TRIM13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.8048706054688 2 528.828246 1055.64194 2.3047 0.0012188 -4.3026 -0.0022753 -1.9979 -0.0010566 528.8261958362679 62.718 0.27742 56.542 56.398 56.676 -6.1757 23 13 2 0 0 0 8.7369 1 40564 40564 26.341 1.6674 1 8763900 + 23042 24209 15681 15973 27125 27125 0.11634470390163187 ILLGTTHQL 9 Unmodified _ILLGTTHQL_ 0 0 0 ENST00000490164.1_1_10:92982504-92982606:+|nuORF ENST00000490164.1_1_10:92982504-92982606:+|nuORF ENST00000490164.1_1_10:92982504-92982606:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2978515625 2 498.297842 994.581131 0.81725 0.00040724 -0.035583 -1.7731E-05 0.78167 0.0003895 498.29776571981324 47.427 0.17523 47.388 47.28 47.455 -0.038647 13 7 2 0 0 0 0.018301 1 25567 25567 65.235 7.7637 1 1308200 23043 14254 15682 15974 27126 27126 0.0836233333996006 ILLHLESEL 9 Unmodified _ILLHLESEL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.81103515625 2 533.810782 1065.60701 0.48198 0.00025729 0.37656 0.00020101 0.85854 0.0004583 533.810939103436 67.286 0.37428 67.286 67.108 67.483 0 45 15 4 0 0 0 0.020973 1 37490 37490 81.864 11.149 1 8279700 23044 2759;14947 15683 15975 27127 27127 0.07683182791583931 ILLHLESEL 9 Unmodified _ILLHLESEL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8113403320312 2 533.810782 1065.60701 0.52406 0.00027975 0.24888 0.00013286 0.77294 0.0004126 533.8108367768745 67.695 0.44515 67.213 67.007 67.453 -0.48219 60 19 4 0 0 0 0.020973 1 37046 37046 81.864 11.149 1 19990000 23045 2759;14947 15683 15975 27128 27128 0.07683182791583931 ILLHLESEL 9 Unmodified _ILLHLESEL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8109741210938 2 533.810782 1065.60701 0.71224 0.0003802 1.513 0.00080766 2.2252 0.0011879 533.8113246412339 84.357 1.4362 78.181 76.897 78.333 -6.1757 141 77 3 0 0 0 0.0094097 3 55314 55190;55314;55437 104.8 27.299 1 45795000 23046 2759;14947 15683 15975 27129;27130;27131 27130 0.07683182791583931 ILLIIIPVLV 10 Unmodified _ILLIIIPVLV_ 0 0 0 ENSG00000185201|ENST00000616316|IFITM2;ENST00000527146.1_2_11:308871-309162:+|nuORF ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185201|ENST00000616316|IFITM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2687072753906 3 369.270145 1104.7886 NaN NaN NaN NaN NaN NaN NaN 101.67 1 101.63 101.13 102.13 -0.045853 0 0 0 1.0061 1 56486 56486 0 0 1 23047 9343 15684 15976 27132 27132 0.24040147555251679 ILLKALTNL 9 Unmodified _ILLKALTNL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MSMS AL20221201_MKP_PDAC_01 4 499.8343505859375 2 499.83406 997.653567 NaN NaN NaN NaN NaN NaN NaN 95.372 1 89.196 88.696 89.696 -6.1757 0 0 0 0.019698 1 63169 63169 118.07 29.165 1 23048 8793 15685 15977 27133 27133 0.1546466741350514 ILLKDILSV 9 Unmodified _ILLKDILSV_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3345947265625 2 507.333893 1012.65323 1.0194 0.00051717 0.35481 0.00018001 1.3742 0.00069717 507.33426016742817 82.822 0.33184 82.884 82.717 83.049 0.062004 25 12 3 0 0 0 0.015688 1 45823 45823 67.838 12.335 1 4126700 23049 6002 15686 15978 27134 27134 0.14741247693666537 ILLKKKLLH 9 Unmodified _ILLKKKLLH_ 0 0 0 REV__ENSG00000255398|ENST00000528880|HCAR3 REV__ENSG00000255398|ENST00000528880|HCAR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3960571289062 2 553.394619 1104.77469 NaN NaN NaN NaN NaN NaN NaN 80.883 1 80.391 79.891 80.891 -0.49247 0 0 0 0.85737 1 44292 44292 0.6015 0 1 + 23050 24535 15687 15979 27135 27135 0.22648914846831758 ILLMRPHY 8 Unmodified _ILLMRPHY_ 0 0 0 REV__ENSG00000142511|ENST00000270590|GPR32 REV__ENSG00000142511|ENST00000270590|GPR32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7989501953125 2 521.796955 1041.57936 0.16098 8.3997E-05 1.9222 0.001003 2.0831 0.001087 521.7980391641348 48.873 0.15485 48.829 48.753 48.908 -0.04369 13 7 2 0 0 0 0.78849 1 26416 26416 9.3474 0 1 1565900 + 23051 20573 15688 15980 27136 27136 0.060230010503573794 ILLPYVSKV 9 Unmodified _ILLPYVSKV_ 0 0 0 ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175 ENST00000515876.5_1_4:941527-949679:+|nuORF ENST00000515876.5_1_4:941527-949679:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3290405273438 2 516.328611 1030.64267 0.4548 0.00023483 -0.19319 -9.9747E-05 0.26161 0.00013508 516.3285508148596 67.817 0.32956 67.835 67.687 68.016 0.018028 33 15 3 0 0 0 0.025842 1 37243 37243 57.722 17.765 1 2798600 23052 4007 15689 15981 27137 27137 0.1285726503922433 ILLRKRLRQRR 11 Unmodified _ILLRKRLRQRR_ 0 0 0 REV__ENST00000378251.2_1_1:3698128-3699238:-|nuORF REV__ENST00000378251.2_1_1:3698128-3699238:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 754.5093994140625 2 754.510235 1507.00592 NaN NaN NaN NaN NaN NaN NaN 104.64 1 104.59 104.09 105.09 -0.048737 0 0 0 0.9435 1 58100 58100 0 0 1 + 23053 26262 15690 15982 27138 27138 0.27269355601220013 ILLYETALL 9 Unmodified _ILLYETALL_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.21337890625 3 350.214476 1047.6216 1.2515 0.00043831 -1.883 -0.00065946 -0.63147 -0.00022115 350.2138443301056 46.208 0.18143 41.253 41.119 41.301 -4.9549 18 11 2 0 0 0 0.34134 1 28468 28468 15.248 0 1 6833500 23054 1308 15691 15983 27139 27139 0.09969254939687744 ILMDFSNSM 9 2 Oxidation (M) _ILM(Oxidation (M))DFSNSM(Oxidation (M))_ ILM(1)DFSNSM(1) ILM(44)DFSNSM(44) 0 0 2 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2334594726562 2 545.233193 1088.45183 0.34498 0.00018809 0.18762 0.00010229 0.53259 0.00029039 545.2332220673231 40.44 0.27322 40.143 40.008 40.281 -0.29716 23 12 2 0 0 0 0.052168 1 21375 21375 44.407 21.259 1 4424700 23055 4412 15692 15984 27140 27140 802;803 -0.08885552396645835 ILMEFGHLF 9 Oxidation (M) _ILM(Oxidation (M))EFGHLF_ ILM(1)EFGHLF ILM(40)EFGHLF 0 0 1 nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7863159179688 2 561.786253 1121.55795 NaN NaN NaN NaN NaN NaN NaN 75.802 1 75.85 75.35 76.35 0.047943 0 0 0 0.11925 1 41810 41810 40.449 8.3316 1 23056 13790 15693 15985 27141 27141 1766 0.0020357123096346186 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(42)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8865356445312 3 383.886476 1148.6376 -0.47639 -0.00018288 -0.21831 -8.3805E-05 -0.69469 -0.00026668 383.8864607201682 25.419 0.33069 25.419 25.26 25.591 0 51 15 4 0 0 0 0.060956 1 13087 13087 42.312 26.574 1 34352000 23057 2556 15694 15986 27142 27142 441 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(65)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2209777832031 3 383.886476 1148.6376 0.26973 0.00010354 -0.43152 -0.00016565 -0.16179 -6.211E-05 383.88641376659467 25.583 0.23264 25.566 25.436 25.669 -0.017006 53 16 4 0 0 0 0.018061 1 13076 13076 65.474 32.688 1 416440000 23058 2556 15694 15986 27143 27143 441 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(57)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8859558105469 3 383.886476 1148.6376 0.16569 6.3605E-05 -1.1767 -0.00045171 -1.011 -0.0003881 383.8861438425443 25.278 0.25184 25.303 25.167 25.418 0.024427 46 15 4 0 0 0 0.026499 2 13037 13037;13138 57.249 30.981 1 168470000 23059 2556 15694 15986 27144;27145 27144 441 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(65)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.886474609375 3 383.886476 1148.6376 1.1692 0.00044883 -0.78479 -0.00030127 0.38438 0.00014756 383.8862256979896 28.882 0.49697 25.733 25.439 25.936 -3.1482 103 26 5 0 0 0 0.018061 3 16242 15998;16122;16242 65.474 34.591 1 1504899999.9999998 23060 2556 15694 15986 27146;27147;27148 27148 441 0.06922637904949624 ILMEHIHKL 9 Oxidation (M) _ILM(Oxidation (M))EHIHKL_ ILM(1)EHIHKL ILM(96)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8284912109375 2 575.326076 1148.6376 0.81064 0.00046638 -0.48939 -0.00028156 0.32125 0.00018482 575.3258342432766 28.842 0.33508 25.694 25.476 25.811 -3.1482 40 16 3 0 0 0 0.0082548 2 16167 16045;16167 96.367 46.434 1 70016000 23061 2556 15694 15986 27149;27150 27150 441 0.06922637904949624 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.55517578125 3 378.554838 1132.64269 -0.2549 -9.6495E-05 1.4563 0.00055128 1.2014 0.00045478 378.55526654025635 33.872 0.29926 33.68 33.521 33.82 -0.19131 29 11 3 0 0 0 0.039985 1 17654 17654 45.74 26.378 1 17183000 23062 2556 15694 15987 27151 27151 0.08166941767581193 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5542602539062 3 378.554838 1132.64269 0.055541 2.1025E-05 -0.51574 -0.00019524 -0.4602 -0.00017421 378.5547420551187 33.569 0.42614 33.598 33.411 33.837 0.028934 57 18 4 0 0 0 0.024882 2 17621 17621;17730 61.602 33.107 1 94423000 23063 2556 15694 15987 27152;27153 27152 0.08166941767581193 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3283081054688 2 567.328619 1132.64269 0.26703 0.0001515 -0.32004 -0.00018157 -0.05301 -3.0074E-05 567.3285343934689 33.607 0.213 33.636 33.483 33.696 0.028934 17 9 2 0 0 0 0.07087 1 17679 17679 39.95 15.276 1 2708000 23064 2556 15694 15987 27154 27154 0.08166941767581193 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3290405273438 2 567.328619 1132.64269 0.92794 0.00052645 0.39443 0.00022377 1.3224 0.00075022 567.328367893458 38.251 0.44003 33.882 33.686 34.126 -4.3689 68 26 3 0 0 0 0.028475 2 22595 22467;22595 56.177 47.749 1 116580000 23065 2556 15694 15987 27155;27156 27156 0.08166941767581193 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5552978515625 3 378.554838 1132.64269 1.3985 0.00052942 -0.073194 -2.7708E-05 1.3253 0.00050171 378.55487613026247 75.174 1.2969 68.998 68.079 69.376 -6.1757 213 69 4 0 0 0 0.024882 7 49017 48658;48779;48900;49017;49140;49261;49388 53.404 28.413 1 221810000 23066 2556 15694 15987 27157;27158;27159;27160;27161;27162;27163 27160 0.08166941767581193 ILMEHIHKL 9 Unmodified _ILMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3297729492188 2 567.328619 1132.64269 1.0403 0.00059021 -0.49761 -0.00028231 0.54272 0.0003079 567.3285846961473 75.162 0.8196 68.986 68.396 69.215 -6.1757 99 43 3 0 0 0 0.0090524 3 49228 48978;49100;49228 85.642 39.621 1 34972000 23067 2556 15694 15987 27164;27165;27166 27166 0.08166941767581193 ILMQKMIAA 9 Unmodified _ILMQKMIAA_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7939758300781 2 509.793023 1017.57149 0.83315 0.00042474 0.32787 0.00016715 1.161 0.00059188 509.79304297997345 32.457 0.47129 28.601 28.383 28.854 -3.8562 60 25 3 0 0 0 0.2001 2 18411 18411;18539 23.148 0.41214 1 31477000 + 23068 23869 15695 15988 27167;27168 27167 0.06341105738545139 ILMQMLEEL 9 Unmodified _ILMQMLEEL_ 0 0 0 REV__ENSG00000135763|ENST00000258243|URB2 REV__ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2932739257812 2 560.293053 1118.57155 0.48955 0.00027429 -2.0547 -0.0011512 -1.5652 -0.00087696 560.2916023352126 39.283 0.31301 39.283 39.135 39.448 0 34 14 3 0 0 0 0.23158 1 21002 21002 20.454 6.5476 1 12774000 + 23069 20097 15696 15989 27169 27169 0.01701060947902988 ILNDEIITI 9 Unmodified _ILNDEIITI_ 0 0 0 ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.3027954101562 2 522.30279 1042.59103 0.42182 0.00022032 0.8383 0.00043784 1.2601 0.00065816 522.3031764054282 79.345 0.32 79.345 79.203 79.523 0 22 12 2 0 0 0 0.16226 1 44062 44062 26.884 0 1 685220 23070 10896 15697 15990 27170 27170 0.0714347655466554 ILNDEIITI 9 Unmodified _ILNDEIITI_ 0 0 0 ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.30279 1042.59103 0.88224 0.0004608 -0.74972 -0.00039158 0.13252 6.9217E-05 522.8040743890086 79.853 0.11668 79.364 79.312 79.428 -0.48933 0.009714 -0.0011887 NaN 26.884 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 614910 23071 10896 15697 15990 0.0714347655466554 ILNNHHICL 9 Unmodified _ILNNHHICL_ 0 0 0 nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-4|CNOT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7691650390625 2 538.787118 1075.55968 1.254 0.00067564 0.61232 0.00032991 1.8663 0.0010055 538.7876239857155 100.07 0.10166 93.896 93.855 93.957 -6.1757 10 6 2 0 0 0 0.18941 1 66805 66805 14.582 0 1 13527000 23072 16172 15698 15991 27171 27171 0.024926250395765237 ILNNYSAQF 9 Unmodified _ILNNYSAQF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557060.1_1_14:64540716-64565614:+|nuORF;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8027954101562 2 535.269281 1068.52401 0.40626 0.00021746 0.70419 0.00037693 1.1104 0.00059439 535.2691570990314 70.121 0.31112 70.156 69.98 70.291 0.035507 22 15 2 0 0 0 0.19613 1 38559 38559 12.532 0.89125 1 7670200 23073 763;12747 15699 15992 27172 27172 -0.007511339364327796 ILNPDRRF 8 Unmodified _ILNPDRRF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7385864257812 2 515.793258 1029.57196 0.33415 0.00017235 -1.5421 -0.00079542 -1.208 -0.00062307 515.7923853097906 58.427 0.22052 58.427 58.29 58.511 0 11 8 2 0 0 0 8.7369 1 32553 32553 6.3541 0 1 983760 23074 1378 15700 15993 27173 27173 0.05835984774262215 ILNPPHVF 8 Unmodified _ILNPPHVF_ 0 0 0 REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF REV__ENST00000375311.1_1_10:31138210-31139252:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 468.7695922851562 2 468.76872 935.522887 NaN NaN NaN NaN NaN NaN NaN 97.388 1 91.212 90.712 91.712 -6.1757 0 0 0 0.41217 1 64543 64543 52.693 12.244 1 + 23075 26201 15701 15994 27174 27174 0.052546964853377176 ILNTNDQEM 9 Unmodified _ILNTNDQEM_ 0 0 0 REV__ENST00000315274.6_1_11:102661186-102661436:-|nuORF REV__ENST00000315274.6_1_11:102661186-102661436:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3011474609375 2 539.247689 1076.48082 0.86453 0.0004662 -3.9607 -0.0021358 -3.0961 -0.0016696 539.2451499649517 79.662 0.30301 79.173 79.03 79.333 -0.48932 25 13 3 0 0 0 0.20358 1 43575 43575 10.074 1.3285 1 1649800 + 23076 25459 15702 15995 27175 27175 -0.054356917760287615 ILNVKSMTPV 10 Unmodified _ILNVKSMTPV_ 0 0 0 ENST00000244061.5_1_20:48568687-48568888:+|nuORF ENST00000244061.5_1_20:48568687-48568888:+|nuORF ENST00000244061.5_1_20:48568687-48568888:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.3223266601562 2 551.32046 1100.62637 NaN NaN NaN NaN NaN NaN NaN 101.86 1 95.685 95.185 96.185 -6.1757 0 0 0 0.71851 1 68374 68374 15.847 2.3393 1 23077 11116 15703 15996 27176 27176 0.08007815810810825 ILPAFILLF 9 Unmodified _ILPAFILLF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8365478515625 2 523.836071 1045.65759 1.6318 0.0008548 -2.5777 -0.0013503 -0.94586 -0.00049547 523.835576677127 103.11 0.061943 96.938 96.908 96.97 -6.1757 31 15 3 0 0 0 0.047696 1 69153 69153 45.75 9.2838 1 38842000 23078 10362 15704 15997 27177 27177 0.1365875690721623 ILPALLHLL 9 Unmodified _ILPALLHLL_ 0 0 0 ENSG00000185467|ENST00000327442|KPNA7 ENSG00000185467|ENST00000327442|KPNA7 ENSG00000185467|ENST00000327442|KPNA7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.2961120605469 2 501.839146 1001.66374 0.88539 0.00044432 -0.26616 -0.00013357 0.61923 0.00031075 501.8393940275714 101.58 0.092094 95.406 95.351 95.443 -6.1757 6 4 2 0 0 0 0.14144 1 68151 68151 28.173 13.592 1 6573400 23079 9373 15705 15998 27178 27178 0.1629727513875423 ILPEKQAEF 9 Unmodified _ILPEKQAEF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7962036132812 2 537.795132 1073.57571 0.27784 0.00014942 1.3849 0.0007448 1.6628 0.00089422 537.7956206521085 37.998 0.30241 37.998 37.826 38.129 0 37 14 3 0 0 0 0.1773 1 20230 20230 25.399 1.3787 1 10805000 23080 10766 15706 15999 27179 27179 0.04186609757448423 ILPEKQAEF 9 Unmodified _ILPEKQAEF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7947998046875 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 38.134 1 38.134 37.634 38.634 0 0 0 0 0.34649 1 20345 20345 22.736 5.6234 1 23081 10766 15706 15999 27180 27180 0.04186609757448423 ILPEKQAEF 9 Unmodified _ILPEKQAEF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7968139648438 2 537.795132 1073.57571 -0.090494 -4.8667E-05 2.1942 0.00118 2.1037 0.0011314 537.7960086865924 38.354 0.22419 38.067 37.93 38.154 -0.28687 14 9 2 0 0 0 0.36964 1 20178 20178 13.906 3.8321 1 857550 23082 10766 15706 15999 27181 27181 0.04186609757448423 ILPERKIH 8 Unmodified _ILPERKIH_ 0 0 0 ENST00000373475.9_1_1:33291917-33292022:+|nuORF ENST00000373475.9_1_1:33291917-33292022:+|nuORF ENST00000373475.9_1_1:33291917-33292022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3148498535156 2 503.313826 1004.6131 0.187 9.4121E-05 0.11285 5.6798E-05 0.29985 0.00015092 503.31393663601847 51.782 0.2633 51.723 51.611 51.875 -0.058918 27 12 3 0 0 0 0.58902 1 28035 28035 26.884 5.3467 1 2867600 23083 12414 15707 16000 27182 27182 0.11097745813742677 ILPFIDDAI 9 Unmodified _ILPFIDDAI_ 0 0 0 REV__nc|ENSG00000290724|O14609|XKRY REV__nc|ENSG00000290724|O14609|XKRY MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.3240966796875 2 508.786776 1015.559 0.22007 0.00011197 0.97781 0.0004975 1.1979 0.00060946 508.78700699156286 99.73 0.17528 93.555 93.448 93.623 -6.1757 18 11 2 0 0 0 0.19298 1 66425 66425 13.508 0 1 40632000 + 23084 30032 15708 16001 27183 27183 0.05184108871492299 ILPGSLFRF 9 Unmodified _ILPGSLFRF_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3103637695312 2 525.310752 1048.60695 -0.20095 -0.00010556 0.017982 9.4463E-06 -0.18297 -9.6114E-05 525.3108134810626 84.289 0.53387 84.352 84.145 84.679 0.063171 45 23 3 0 0 0 0.0082661 2 46599 46599;46715 92.491 41.636 1 47947000 23085 4833 15709 16002 27184;27185 27184 0.08459227582216045 ILPGSLFRF 9 Unmodified _ILPGSLFRF_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3115844726562 2 525.310752 1048.60695 0.95001 0.00049905 -0.13988 -7.3482E-05 0.81013 0.00042557 525.3106189659037 98.521 0.2717 92.346 92.221 92.493 -6.1757 69 19 5 0 0 0 0.015445 2 65298 65298;65447 68.081 23.674 1 869120000 23086 4833 15709 16002 27186;27187 27186 0.08459227582216045 ILPIKFPHL 9 Unmodified _ILPIKFPHL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.8990783691406 3 359.898822 1076.67464 0.5207 0.0001874 0.19181 6.9031E-05 0.71251 0.00025643 359.8988680986483 71.778 0.58356 71.817 71.49 72.073 0.039024 94 27 4 0 0 0 0.12841 2 39421 39421;39521 34.402 11.665 1 26831000 23087 3445;4427;15642 15710 16003 27188;27189 27188 0.13936677513015638 ILPIKFPHL 9 Unmodified _ILPIKFPHL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3450927734375 2 539.344595 1076.67464 0.61363 0.00033096 -0.54897 -0.00029608 0.064658 3.4873E-05 539.3442176340028 71.762 0.31385 71.801 71.62 71.934 0.039024 30 14 3 0 0 0 0.078417 1 39506 39506 38.151 20.016 1 1782600 23088 3445;4427;15642 15710 16003 27190 27190 0.13936677513015638 ILPIKFPHL 9 Unmodified _ILPIKFPHL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8991394042969 3 359.898822 1076.67464 1.6912 0.00060867 0.029697 1.0688E-05 1.7209 0.00061936 359.8987442444341 94.75 0.39468 88.575 88.409 88.803 -6.1757 70 22 4 0 0 0 0.078417 2 62708 62708;62825 34.402 11.665 1 185460000 23089 3445;4427;15642 15710 16003 27191;27192 27191 0.13936677513015638 ILPIKFPHL 9 Unmodified _ILPIKFPHL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3447875976562 2 539.344595 1076.67464 0.89042 0.00048025 -0.045907 -2.476E-05 0.84452 0.00045549 539.3445595360843 94.757 0.28491 88.581 88.445 88.73 -6.1757 43 16 3 0 0 0 0.12841 1 62738 62738 30.225 9.3536 1 47076000 23090 3445;4427;15642 15710 16003 27193 27193 0.13936677513015638 ILPKELQTW 9 Unmodified _ILPKELQTW_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3264770507812 2 564.326599 1126.63865 0.44246 0.00024969 0.24453 0.00013799 0.68699 0.00038769 564.3264439158133 58.711 0.26571 58.22 58.005 58.271 -0.49079 20 12 2 0 0 0 0.16226 1 31914 31914 26.884 1.4843 1 2567900 23091 8223 15711 16004 27194 27194 0.08039175545513899 ILPKELQTW 9 Unmodified _ILPKELQTW_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;nc|ENSG00000172466|P17028-2|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3276977539062 2 564.326599 1126.63865 1.6099 0.00090849 0.1093 6.1679E-05 1.7192 0.00097016 564.3267209197378 64.238 0.72268 58.062 57.802 58.525 -6.1757 92 38 3 0 0 0 0.032796 2 41488 41488;41618 53.833 19.431 1 86127000 23092 8223 15711 16004 27195;27196 27195 0.08039175545513899 ILPKVIYRF 9 Unmodified _ILPKVIYRF_ 0 0 0 nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|62|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|163|3|sense;L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|47|1|sense nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5783386230469 3 383.57786 1147.71175 0.73674 0.0002826 0.42524 0.00016311 1.162 0.00044571 383.5779935707379 57.56 0.31579 57.494 57.339 57.655 -0.066036 48 15 4 0 0 0 0.05483 1 31352 31352 43.772 30.158 1 10049000 23093 16660 15712 16005 27197 27197 0.14380349058797037 ILPKVIYRF 9 Unmodified _ILPKVIYRF_ 0 0 0 nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|62|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|163|3|sense;L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|47|1|sense nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5783386230469 3 383.57786 1147.71175 1.4905 0.00057171 -0.35651 -0.00013675 1.134 0.00043496 383.5777700603563 87.124 0.55811 80.948 80.624 81.182 -6.1757 64 30 3 0 0 0 0.2546 1 57436 57436 19.362 11.206 1 39050000 23094 16660 15712 16005 27198 27198 0.14380349058797037 ILPKVIYRF 9 Unmodified _ILPKVIYRF_ 0 0 0 nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|62|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|163|3|sense;L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|47|1|sense nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.3106689453125 2 574.863152 1147.71175 1.1262 0.00064739 -0.87645 -0.00050384 0.2497 0.00014355 574.8630616947929 87.105 0.34152 80.929 80.77 81.112 -6.1757 26 18 2 0 0 0 0.12183 1 57412 57412 34.102 15.967 1 11448000 23095 16660 15712 16005 27199 27199 0.14380349058797037 ILPLMNWLH 9 Unmodified _ILPLMNWLH_ 0 0 0 REV__ENST00000432079.5_1_1:193054465-193054618:+|nuORF REV__ENST00000432079.5_1_1:193054465-193054618:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8170166015625 2 568.817887 1135.62122 NaN NaN NaN NaN NaN NaN NaN 40.297 1 40.302 39.802 40.802 0.0050545 0 0 0 0.84021 1 21484 21484 2.0598 0 1 + 23096 26985 15713 16006 27200 27200 0.058835567388541676 ILPNAQLVF 9 Unmodified _ILPNAQLVF_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.8035583496094 2 507.80276 1013.59097 1.7747 0.00090122 -0.18157 -9.22E-05 1.5932 0.00080902 507.80259539100814 81.535 0.54442 81.595 81.315 81.86 0.059929 62 20 4 0 0 0 0.052168 2 45025 45025;45122 44.407 14.182 1 23287000 23097 6501 15714 16007 27201;27202 27201 0.08471521345325073 ILPNAQLVF 9 Unmodified _ILPNAQLVF_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 507.80276 1013.59097 0.33118 0.00016817 0.00080292 4.0773E-07 0.33198 0.00016858 507.8026558354978 82.187 0.37212 81.692 81.471 81.843 -0.4952 0.048177 0.00012836 NaN 44.407 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 895910 23098 6501 15714 16007 0.08471521345325073 ILPPFIWTL 9 Unmodified _ILPPFIWTL_ 0 0 0 ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7 ENST00000471365.1_1_10:38658087-38667032:+|nuORF ENST00000471365.1_1_10:38658087-38667032:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3317260742188 2 550.331153 1098.64775 1.0722 0.00059008 0.84941 0.00046746 1.9216 0.0010575 550.3317218617909 102.49 0.068436 96.31 96.28 96.348 -6.1757 22 11 2 0 0 0 0.027803 1 68770 68770 56.541 56.541 1 6551300 23099 4378 15715 16008 27203 27203 0.10237568901834493 ILPPLLQLF 9 Unmodified _ILPPLLQLF_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 ENSG00000114030|ENST00000344337|KPNA1 MSMS AL20221201_MKP_PDAC_01 4 527.339599609375 2 527.338978 1052.6634 NaN NaN NaN NaN NaN NaN NaN 102.62 1 96.445 95.945 96.945 -6.1757 0 0 0 0.075639 1 68860 68860 49.669 17.552 1 23100 3014 15716 16009 27204 27204 0.13917855418890213 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3178405761719 2 506.315503 1010.61645 3.2933 0.0016674 -2.9226 -0.0014797 0.37074 0.00018771 506.3141233903522 99.669 0.37527 99.633 99.452 99.827 -0.036308 42 13 5 0 0 0 0.042911 2 55316 55316;55421 48.346 8.7031 1 19002000 23101 2437 15717 16010 27205;27206 27205 0.1115699586774781 ILPPQLALF 9 Unmodified _ILPPQLALF_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3162841796875 2 506.315503 1010.61645 1.3024 0.00065941 0.049796 2.5212E-05 1.3522 0.00068462 506.31556974357676 101.04 0.20968 94.86 94.764 94.974 -6.1757 35 11 4 0 0 0 0.070838 1 67697 67697 39.957 14.558 1 244570000 23102 2437 15717 16010 27207 27207 0.1115699586774781 ILPPRTGNHV 10 Unmodified _ILPPRTGNHV_ 0 0 0 REV__nc|ENSG00000135341|O43318-4|MAP3K7 REV__nc|ENSG00000135341|O43318-4|MAP3K7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5495910644531 3 368.548852 1102.62473 NaN NaN NaN NaN NaN NaN NaN 50.969 1 50.915 50.415 51.415 -0.053871 0 0 0 0.96981 1 27576 27576 1.9064 0 1 + 23103 20054 15718 16011 27208 27208 0.07751942837080605 ILPPYING 8 Unmodified _ILPPYING_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7555541992188 2 443.755278 885.496004 0.56148 0.00024916 -0.22423 -9.9505E-05 0.33724 0.00014965 443.75522077525557 47.778 0.42982 47.425 47.105 47.535 -0.3526 34 20 2 0 0 0 0.67481 2 25635 25533;25635 19.439 5.9311 1 2605300 + 23104 21967 15719 16012 27209;27210 27210 0.04867587874127821 ILPPYING 8 Unmodified _ILPPYING_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.755859375 2 443.755278 885.496004 NaN NaN NaN NaN NaN NaN NaN 54.8 1 48.935 48.435 49.435 -5.8653 0 0 0 0.88073 1 34807 34807 19.439 0 1 + 23105 21967 15719 16012 27211 27211 0.04867587874127821 ILPPYING 8 Unmodified _ILPPYING_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.7557373046875 2 443.755278 885.496004 NaN NaN NaN NaN NaN NaN NaN 55.005 1 49.084 48.584 49.584 -5.9211 0 0 0 0.73801 1 34961 34961 26.341 5.4701 1 + 23106 21967 15719 16012 27212 27212 0.04867587874127821 ILPPYING 8 Unmodified _ILPPYING_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.7561645507812 2 443.755278 885.496004 NaN NaN NaN NaN NaN NaN NaN 55.199 1 49.278 48.778 49.778 -5.9211 0 0 0 0.73801 1 35110 35110 26.341 0 1 + 23107 21967 15719 16012 27213 27213 0.04867587874127821 ILPPYING 8 Unmodified _ILPPYING_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.755278 885.496004 0.56148 0.00024916 -0.22423 -9.9505E-05 0.33724 0.00014965 443.75522077525557 47.778 0.42982 47.425 47.105 47.535 -0.3526 0 0 NaN 19.439 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2605300 + 23108 21967 15719 16012 0.04867587874127821 ILPREFYAW 9 Unmodified _ILPREFYAW_ 0 0 0 ENST00000466948.1_1_7:99217289-99228306:+|nuORF;ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000466948.1_1_7:99217289-99228306:+|nuORF ENST00000466948.1_1_7:99217289-99228306:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8184204101562 2 597.818941 1193.62333 0.19065 0.00011398 0.036108 2.1586E-05 0.22676 0.00013556 597.8189037463578 72.089 0.34097 72.128 71.934 72.275 0.039024 38 16 3 0 0 0 0.07087 2 39637 39637;39750 39.95 15.929 1 13313000 23109 9899 15720 16013 27214;27215 27214 0.03426308748316842 ILPREFYAW 9 Unmodified _ILPREFYAW_ 0 0 0 ENST00000466948.1_1_7:99217289-99228306:+|nuORF;ENST00000481424.5_1_7:99217223-99217685:+|nuORF;nc|ENSG00000197037|Q6NSZ9-4|ZSCAN25;nc|ENSG00000197037|Q6NSZ9-2|ZSCAN25;ENSG00000197037|ENST00000394152|ZSCAN25 ENST00000466948.1_1_7:99217289-99228306:+|nuORF ENST00000466948.1_1_7:99217289-99228306:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8211669921875 2 597.818941 1193.62333 0.57402 0.00034316 -0.51036 -0.0003051 0.063666 3.8061E-05 597.8189303152955 89.827 0.78393 83.651 83.273 84.057 -6.1757 79 43 2 0 0 0 0.047714 3 59219 59087;59219;59359 45.74 20.341 1 35004000 23110 9899 15720 16013 27216;27217;27218 27217 0.03426308748316842 ILPRSLALI 9 Unmodified _ILPRSLALI_ 0 0 0 nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A nc|ENSG00000112984|O95235-2|KIF20A nc|ENSG00000112984|O95235-2|KIF20A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.333984375 2 498.334227 994.653902 0.12509 6.2338E-05 -0.45272 -0.0002256 -0.32763 -0.00016327 498.33407357065744 80.186 0.4063 80.243 80.004 80.41 0.057587 55 20 3 0 0 0 0.20428 2 44270 44270;44373 22.736 3.2973 1 148860000 23111 2935 15721 16014 27219;27220 27219 0.15636087133361798 ILPRSLALI 9 Unmodified _ILPRSLALI_ 0 0 0 nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A nc|ENSG00000112984|O95235-2|KIF20A nc|ENSG00000112984|O95235-2|KIF20A MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3358764648438 2 498.334227 994.653902 1.3961 0.00069571 0.17063 8.5031E-05 1.5667 0.00078075 498.3342966949836 98.394 0.23811 92.218 92.042 92.28 -6.1757 44 15 4 0 0 0 0.14 1 65225 65225 29.082 3.6823 1 598940000 23112 2935 15721 16014 27221 27221 0.15636087133361798 ILPRSLALI 9 Unmodified _ILPRSLALI_ 0 0 0 nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A nc|ENSG00000112984|O95235-2|KIF20A nc|ENSG00000112984|O95235-2|KIF20A MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3346252441406 2 498.334227 994.653902 0.93676 0.00046682 -0.17355 -8.6485E-05 0.76321 0.00038034 498.33408175008583 98.551 0.2282 92.375 92.28 92.508 -6.1757 54 16 4 0 0 0 0.20428 1 65358 65358 22.736 3.2973 1 865520000 23113 2935 15721 16014 27222 27222 0.15636087133361798 ILPSIFCLW 9 Carbamidomethyl (C) _ILPSIFC(Carbamidomethyl (C))LW_ ILPSIFC(1)LW ILPSIFC(71)LW 0 1 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8135986328125 2 574.81227 1147.60999 1.0433 0.00059969 1.3383 0.00076929 2.3816 0.001369 574.813119606893 102.3 0.11746 96.122 96.052 96.169 -6.1757 14 6 3 0 0 0 0.013472 1 68657 68657 70.716 23.795 1 21533000 23114 6622 15722 16015 27223 27223 653 0.04208734644726064 ILPSIFCLW 9 Carbamidomethyl (C) _ILPSIFC(Carbamidomethyl (C))LW_ ILPSIFC(1)LW ILPSIFC(67)LW 0 1 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1148.617553710938 1 1148.61726 1147.60999 0.86688 0.00099571 1.0902 0.0012522 1.9571 0.0022479 1148.6179561322347 102.3 0.086067 96.122 96.072 96.158 -6.1757 8 4 3 0 0 0 0.023371 1 68675 68675 67.344 21.323 1 8141900 23115 6622 15722 16015 27224 27224 653 0.04208734644726064 ILPSTTLTF 9 Unmodified _ILPSTTLTF_ 0 0 0 ENST00000519683.1_1_5:153830726-153830774:+|nuORF ENST00000519683.1_1_5:153830726-153830774:+|nuORF ENST00000519683.1_1_5:153830726-153830774:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7877502441406 2 496.786776 991.558998 0.97386 0.0004838 0.62246 0.00030923 1.5963 0.00079303 496.78686417600437 84.007 0.48111 77.832 77.587 78.068 -6.1757 64 25 3 0 0 0 0.03327 1 55287 55287 53.576 2.7205 1 23339000 23116 14713 15723 16016 27225 27225 0.06288108871513032 ILPWHAGTY 9 Unmodified _ILPWHAGTY_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-5|CD22 nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7382202148438 2 529.276909 1056.53927 0.029249 1.5481E-05 -1.1402 -0.00060346 -1.1109 -0.00058798 529.2759083572381 40.662 0.21052 40.662 40.491 40.701 0 20 11 2 0 0 0 0.19298 1 21798 21798 13.508 0 1 10269000 23117 456 15724 16017 27226 27226 0.013257776514137731 ILQAHLHSL 9 Unmodified _ILQAHLHSL_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.3030395507812 2 516.303458 1030.59236 -0.55317 -0.0002856 -0.041056 -2.1198E-05 -0.59423 -0.0003068 516.3035491474416 36.092 0.24843 35.843 35.703 35.952 -0.2497 20 11 2 0 0 0 0.00035873 1 18915 18915 147.06 68.91 1 7330000 23118 1262 15725 16018 27227 27227 0.07829155434069435 ILQAHLHSL 9 Unmodified _ILQAHLHSL_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3026123046875 2 516.303458 1030.59236 0.016903 8.7268E-06 -0.53065 -0.00027398 -0.51375 -0.00026525 516.3030458663577 35.715 0.26144 35.74 35.624 35.885 0.024967 26 12 3 0 0 0 0.0017364 1 18875 18875 134.3 62.373 1 12309000 23119 1262 15725 16018 27228 27228 0.07829155434069435 ILQAHLHSL 9 Unmodified _ILQAHLHSL_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8069458007812 2 516.303458 1030.59236 0.31815 0.00016426 -0.15996 -8.259E-05 0.15819 8.1672E-05 516.3033665342479 40.165 0.44525 35.636 35.444 35.889 -4.5294 85 38 3 0 0 0 0.0038489 1 23873 23873 122.18 59.607 1 85633000 23120 1262 15725 16018 27229 27229 0.07829155434069435 ILQDGRIFI 9 Unmodified _ILQDGRIFI_ 0 0 0 ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB ENSG00000125835|ENST00000381342|SNRPB ENSG00000125835|ENST00000381342|SNRPB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2774658203125 2 537.818941 1073.62333 0.78011 0.00041956 -0.17973 -9.6662E-05 0.60039 0.0003229 537.8190620805017 64.504 0.20966 64.493 64.377 64.586 -0.010536 22 10 3 0 0 0 0.18482 1 35325 35325 18.146 0 1 1771300 23121 3892 15726 16019 27230 27230 0.08946308748318188 ILQDRLNQV 9 Unmodified _ILQDRLNQV_ 0 0 0 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.8173217773438 2 549.81693 1097.61931 0.30786 0.00016927 -0.43942 -0.0002416 -0.13156 -7.2335E-05 549.8167488003818 37.773 0.24065 37.773 37.645 37.885 0 23 11 3 0 0 0 0.0082475 1 20123 20123 92.653 20.731 1 4186800 23122 1637 15727 16020 27231 27231 0.07440219254613112 ILQDRLNQV 9 Unmodified _ILQDRLNQV_ 0 0 0 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.8167724609375 2 549.81693 1097.61931 0.029358 1.6141E-05 -0.11459 -6.3005E-05 -0.085235 -4.6864E-05 549.8168234963358 38.054 0.26361 37.783 37.66 37.924 -0.27133 30 12 3 0 0 0 0.011291 1 20008 20008 76.825 22.992 1 8079000 23123 1637 15727 16020 27232 27232 0.07440219254613112 ILQDRLNQV 9 Unmodified _ILQDRLNQV_ 0 0 0 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 ENSG00000094804|ENST00000209728|CDC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.815673828125 2 549.81693 1097.61931 0.64472 0.00035448 -1.4455 -0.00079475 -0.80076 -0.00044027 549.8159123501447 43.512 0.46346 38.748 38.539 39.002 -4.7648 66 29 3 0 0 0 0.040683 1 26412 26412 49.554 9.6046 1 37693000 23124 1637 15727 16020 27233 27233 0.07440219254613112 ILQEKLQEI 9 Unmodified _ILQEKLQEI_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3302612304688 2 557.329339 1112.64412 1.1327 0.00063128 -0.67732 -0.00037749 0.45536 0.00025379 557.3290043611871 46.187 0.20818 46.187 46.044 46.252 0 20 9 3 0 0 0 0.022653 1 25222 25222 74.2 1.2317 1 4025400 23125 756 15728 16021 27234 27234 0.0923085433732922 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000080503|P51531-2|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2300720214844 3 407.2313 1218.67207 -0.52895 -0.00021541 -0.30261 -0.00012323 -0.83157 -0.00033864 407.2308726829832 35.142 0.34601 35.142 34.939 35.285 0 35 17 4 0 0 0 0.20507 1 18539 18539 22.658 7.7009 1 8091000 23126 4023;1298 15729 16022 27235 27235 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000080503|P51531-2|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.230712890625 3 407.2313 1218.67207 -0.34724 -0.00014141 0.29588 0.00012049 -0.051359 -2.0915E-05 407.2313655770793 35.271 0.28156 35.048 34.895 35.176 -0.2224 33 12 4 0 0 0 0.098164 1 18435 18435 33.445 13.819 1 11113000 23127 4023;1298 15729 16022 27236 27236 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000080503|P51531-2|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2320251464844 3 407.2313 1218.67207 1.005 0.00040925 0.38426 0.00015648 1.3892 0.00056573 407.2314553667258 39.354 0.37171 34.903 34.72 35.091 -4.4509 57 22 3 0 0 0 0.030212 2 23274 23274;23397 55.235 25.797 1 38020000 23128 4023;1298 15729 16022 27237;27238 27237 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000080503|P51531-2|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.2313 1218.67207 -0.52895 -0.00021541 -0.30261 -0.00012323 -0.83157 -0.00033864 407.2308726829832 35.142 0.34601 35.142 34.939 35.285 0 0.10894 -0.00071038 NaN 55.235 35 17 4 NaN NaN NaN NaN 0 NaN NaN 0 8091000 23129 4023;1298 15729 16022 0.07148177317412774 ILQEREYRL 9 Unmodified _ILQEREYRL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000080503|P51531-2|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 407.2313 1218.67207 -0.21819 -8.8852E-05 1.3262 0.00054008 1.108 0.00045123 407.2319494226852 35.011 0.15474 35.039 34.947 35.102 0.027405 0.0057092 0.0012796 NaN 55.235 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 663200 23130 4023;1298 15729 16022 0.07148177317412774 ILQETVKEL 9 Unmodified _ILQETVKEL_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8157958984375 2 536.816064 1071.61758 NaN NaN NaN NaN NaN NaN NaN 43.737 1 43.737 43.237 44.237 0 0 0 0 0.026638 1 23777 23777 70.332 5.097 1 23131 6463 15730 16023 27239 27239 0.08463165446005405 ILQETVKEL 9 Unmodified _ILQETVKEL_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8162841796875 2 536.816064 1071.61758 0.73471 0.00039441 -1.0599 -0.00056898 -0.3252 -0.00017457 536.8158820524679 49.887 0.45193 44.347 44.079 44.531 -5.5391 52 28 2 0 0 0 0.033587 1 31261 31261 53.404 7.7044 1 45551000 23132 6463 15730 16023 27240 27240 0.08463165446005405 ILQFRLYKKKF 11 Unmodified _ILQFRLYKKKF_ 0 0 0 ENST00000519589.1_1_8:133141511-133152462:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;ENSG00000184156|ENST00000388996|KCNQ3 ENST00000519589.1_1_8:133141511-133152462:-|nuORF ENST00000519589.1_1_8:133141511-133152462:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.4617919921875 2 742.461022 1482.90749 0.15108 0.00011217 0.446 0.00033113 0.59707 0.0004433 742.462097030141 97.79 0.41344 97.547 97.313 97.727 -0.24277 40 20 3 0 0 0 0.74203 1 53435 53435 0.30703 0 1 6729900 23133 9225 15731 16024 27241 27241 0.18535314512814693 ILQKDAFLVF 10 Unmodified _ILQKDAFLVF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.350341796875 2 597.350074 1192.6856 0.49051 0.00029301 0.36811 0.00021989 0.85862 0.0005129 597.3501871708045 101.31 0.11404 95.134 95.064 95.178 -6.1757 20 6 4 0 0 0 0.10406 1 67938 67938 54.774 2.5052 1 213780000 23134 944 15732 16025 27242 27242 0.09696035096635569 ILQNKIDLV 9 Unmodified _ILQNKIDLV_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENST00000487075.1_1_X:24073085-24080702:+|nuORF ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3265991210938 2 528.326599 1054.63865 1.1917 0.0006296 -0.52747 -0.00027868 0.66421 0.00035092 528.3263940853212 59.147 0.39115 53.073 52.92 53.311 -6.0745 40 21 2 0 0 0 0.008513 2 38033 37904;38033 99.755 24.826 1 28968000 23135 4251 15733 16026 27243;27244 27244 0.11351175545519254 ILQNPLMIKIN 11 Unmodified _ILQNPLMIKIN_ 0 0 0 ENSG00000198951|ENST00000396398|NAGA ENSG00000198951|ENST00000396398|NAGA ENSG00000198951|ENST00000396398|NAGA MSMS AL20221201_MKP_PDAC_01 4 432.92919921875 3 432.928453 1295.76353 NaN NaN NaN NaN NaN NaN NaN 67.682 1 61.506 61.006 62.006 -6.1757 0 0 0 0.41846 1 44105 44105 17.049 0 1 23136 10209 15734 16027 27245 27245 0.12747724690370887 ILQPDPNL 8 Unmodified _ILQPDPNL_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2563171386719 2 455.255643 908.496732 NaN NaN NaN NaN NaN NaN NaN 91.118 1 90.623 90.123 91.123 -0.49457 0 0 0 0.9489 1 49810 49810 10.824 2.2306 1 + 23137 17541 15735 16028 27246 27246 0.03882382523170236 ILQQSIQUAA 10 Unmodified _ILQQSIQUAA_ 0 0 0 REV__ENSG00000250722|ENST00000514985|SELENOP REV__ENSG00000250722|ENST00000514985|SELENOP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7564697265625 2 561.756467 1121.49838 NaN NaN NaN NaN NaN NaN NaN 2.8021 1 2.7897 2.2897 3.2897 -0.012334 0 0 0 1.0061 1 1422 1422 0 0 0 + 23138 24501 15736 16029 27247 27247 -0.05750852013784424 ILRAQMEVY 9 Unmodified _ILRAQMEVY_ 0 0 0 nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8026123046875 2 561.802434 1121.59032 1.3305 0.00074749 -0.59827 -0.00033611 0.73226 0.00041139 561.8027750783729 50.305 0.20679 44.765 44.647 44.854 -5.5391 17 12 2 0 0 0 0.094149 1 31522 31522 34.402 2.0962 1 8682800 23139 3693 15737 16030 27248 27248 0.0343835863395725 ILREIETG 8 Unmodified _ILREIETG_ 0 0 0 REV__ENSG00000165813|ENST00000369287|CCDC186 REV__ENSG00000165813|ENST00000369287|CCDC186 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2278747558594 2 465.766374 929.518196 0.1321 6.1528E-05 0.62957 0.00029323 0.76167 0.00035476 465.7666358929634 23.699 0.58989 23.699 23.529 24.119 0 62 29 3 0 0 0 8.7369 1 12242 12242 13.508 0 1 3119000 + 23140 22054 15738 16031 27249 27249 0.05061767551922003 ILRENLLLV 9 Unmodified _ILRENLLLV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.8501586914062 2 541.850242 1081.68593 0.41957 0.00022734 -0.2933 -0.00015892 0.12627 6.8417E-05 541.8500141967448 75.742 0.24439 75.265 75.104 75.349 -0.47714 15 10 2 0 0 0 0.31356 1 41438 41438 22.736 3.4793 1 1251000 23141 9210 15739 16032 27250 27250 0.14835454816511628 ILRENLLLV 9 Unmodified _ILRENLLLV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8501586914062 2 541.850242 1081.68593 0.23685 0.00012834 -0.048404 -2.6228E-05 0.18845 0.00010211 541.8502914728466 75.051 0.32706 75.097 74.961 75.288 0.045959 25 15 2 0 0 0 0.11005 1 41399 41399 34.402 9.4108 1 5607600 23142 9210 15739 16032 27251 27251 0.14835454816511628 ILRENLLLV 9 Unmodified _ILRENLLLV_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.850242 1081.68593 0.41957 0.00022734 -0.2933 -0.00015892 0.12627 6.8417E-05 541.8500141967448 75.742 0.24439 75.265 75.104 75.349 -0.47714 0.083751 -0.00016834 NaN 34.402 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1251000 23143 9210 15739 16032 0.14835454816511628 ILRNIWRAYKW 11 Unmodified _ILRNIWRAYKW_ 0 0 0 ENST00000519417.1_1_8:43529420-43529591:-|nuORF ENST00000519417.1_1_8:43529420-43529591:-|nuORF ENST00000519417.1_1_8:43529420-43529591:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 759.93798828125 2 759.938245 1517.86194 0.23505 0.00017863 -0.76983 -0.00058502 -0.53478 -0.0004064 759.9377108560071 83.589 0.29086 83.652 83.491 83.782 0.063171 23 10 3 0 0 0 0.67922 1 46255 46255 6.2058 0 1 18514000 23144 14707 15740 16033 27252 27252 0.12372089050450086 ILRNPIYTV 9 Unmodified _ILRNPIYTV_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;ENST00000476354.2_1_10:79575932-79579275:-|nuORF ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3175659179688 2 544.826766 1087.63898 0.40515 0.00022074 1.2659 0.0006897 1.6711 0.00091043 544.8272247687839 78.899 0.37544 78.954 78.754 79.13 0.054977 24 14 3 0 0 0 0.11012 1 43531 43531 28.487 0 1 8907500 23145 6097 15741 16034 27253 27253 0.09866595265361866 ILRNPVRQP 9 Unmodified _ILRNPVRQP_ 0 0 0 REV__nc|ENSG00000006282|Q8TB22|SPATA20 REV__nc|ENSG00000006282|Q8TB22|SPATA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8926391601562 3 364.89273 1091.65636 -0.020355 -7.4274E-06 1.3305 0.0004855 1.3102 0.00047807 364.8930903240813 16.105 0.1907 16.11 15.987 16.178 0.0050564 23 18 2 0 0 0 0.57757 1 8015 8015 2.7352 0.23671 1 320860 + 23146 16986 15742 16035 27254 27254 0.11419935591038666 ILRNPVRQP 9 Unmodified _ILRNPVRQP_ 0 0 0 REV__nc|ENSG00000006282|Q8TB22|SPATA20 REV__nc|ENSG00000006282|Q8TB22|SPATA20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 364.89273 1091.65636 -0.020355 -7.4274E-06 1.3305 0.0004855 1.3102 0.00047807 364.8930903240813 16.105 0.1907 16.11 15.987 16.178 0.0050564 0 0 NaN 2.7352 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 320860 + 23147 16986 15742 16035 0.11419935591038666 ILRQWHLL 8 Unmodified _ILRQWHLL_ 0 0 0 ENST00000321725.10_1_3:52550585-52551339:+|nuORF ENST00000321725.10_1_3:52550585-52551339:+|nuORF ENST00000321725.10_1_3:52550585-52551339:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3319702148438 2 539.829643 1077.64473 0.30842 0.00016649 -1.0409 -0.00056193 -0.73252 -0.00039543 539.828731157313 88.771 0.30263 88.267 88.068 88.371 -0.50423 23 12 3 0 0 0 0.76266 1 48525 48525 15.768 2.2603 1 612790 23148 11775 15743 16036 27255 27255 0.109017385676907 ILRRLHLV 8 Unmodified _ILRRLHLV_ 0 0 0 REV__ENSG00000015133|ENST00000389857|CCDC88C REV__ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3469543457031 2 510.345461 1018.67637 0.24571 0.0001254 2.37 0.0012095 2.6157 0.0013349 510.34649905298824 88.348 0.18665 87.844 87.725 87.912 -0.50423 13 8 2 0 0 0 0.74163 1 48307 48307 13.508 0.97634 1 735630 + 23149 17084 15744 16037 27256 27256 0.1677773132165612 ILRRLLRRYRE 11 Unmodified _ILRRLLRRYRE_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.48876953125 2 772.486425 1542.9583 NaN NaN NaN NaN NaN NaN NaN 97.679 1 97.437 96.937 97.937 -0.24277 0 0 0 0.9435 1 53341 53341 0 0 1 23150 2556 15745 16038 27257 27257 0.20853656610393045 ILRSRFTRHS 10 Unmodified _ILRSRFTRHS_ 0 0 0 REV__ENST00000295754.9_1_3:30648085-30686250:+|nuORF REV__ENST00000295754.9_1_3:30648085-30686250:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8687744140625 2 636.86782 1271.72109 0.077991 4.967E-05 0.36284 0.00023108 0.44084 0.00028075 636.8682014843401 80.122 2.4614 80.18 79.905 82.366 0.057587 424 103 6 0 0 0 0.62068 3 44629 44409;44629;44843 10.074 10.074 1 13269000000 + 23151 25263 15746 16039 27258;27259;27260 27259 0.09609510397035592 ILRTIRLPKK 10 Unmodified _ILRTIRLPKK_ 0 0 0 ENST00000391403.3_2_18:19996123-19996312:-|nuORF ENST00000391403.3_2_18:19996123-19996312:-|nuORF ENST00000391403.3_2_18:19996123-19996312:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 413.2532653808594 3 413.28708 1236.83941 NaN NaN NaN NaN NaN NaN NaN 104.66 1 98.487 97.987 98.987 -6.1757 0 0 0 0.99897 1 70076 70076 0.77653 0.61721 1 23152 12652 15747 16040 27261 27261 0.23046489652824675 ILRTLNHFV 9 Unmodified _ILRTLNHFV_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5424194335938 3 371.557348 1111.65021 0.36068 0.00013401 0.10401 3.8645E-05 0.46469 0.00017266 371.55729229036655 48.189 0.19754 48.151 48.047 48.244 -0.038643 24 9 3 0 0 0 0.2188 1 25934 25934 1.0715 0.20709 1 6297100 + 23153 20883 15748 16041 27262 27262 0.09885417359510029 ILSAMTLLL 9 Oxidation (M) _ILSAM(Oxidation (M))TLLL_ ILSAM(1)TLLL ILSAM(64)TLLL 0 0 1 REV__nc|ENSG00000182333|P07098-2|LIPF REV__nc|ENSG00000182333|P07098-2|LIPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7977294921875 2 495.798829 989.583104 0.75095 0.00037232 -2.6151 -0.0012966 -1.8642 -0.00092427 495.79714833531835 101.71 0.10089 95.535 95.461 95.562 -6.1757 7 4 2 0 0 0 0.019979 1 68284 68284 63.563 12.708 1 49506000 + 23154 23264 15749 16042 27263 27263 1853 0.08789626033558307 ILSEKTTW 8 Unmodified _ILSEKTTW_ 0 0 0 ENST00000262839.2_1_X:111195654-111325157:-|nuORF ENST00000262839.2_1_X:111195654-111325157:-|nuORF ENST00000262839.2_1_X:111195654-111325157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5322875976562 1 977.530224 976.522947 -0.20049 -0.00019599 -0.56164 -0.00054902 -0.76213 -0.00074501 977.5296367882008 70.837 0.35509 70.837 70.686 71.041 0 107 40 3 0 0 0 0.80311 1 39427 39427 4.756 0.81161 1 7756900 23155 11277 15750 16043 27264 27264 0.033746516946507654 ILSESLHSL 9 Unmodified _ILSESLHSL_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7806701660156 2 499.779482 997.544411 0.21936 0.00010963 0.80824 0.00040394 1.0276 0.00051357 499.77974252521057 48.463 0.17866 48.091 47.983 48.162 -0.37172 15 8 2 0 0 0 0.019303 1 26003 26003 64.236 13.381 1 3312600 23156 1960 15751 16044 27265 27265 0.04554036723379795 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7799377441406 2 493.779482 985.544411 0.24496 0.00012095 0.029736 1.4683E-05 0.27469 0.00013564 493.77925941141694 46.738 0.27264 46.738 46.585 46.858 0 31 12 3 0 0 0 0.026094 1 25527 25527 57.471 15.632 1 10391000 23157 5553 15752 16045 27266 27266 0.05106036723384477 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS AL20221201_MKP_PDAC_01 4 493.7797546386719 2 493.779482 985.544411 NaN NaN NaN NaN NaN NaN NaN 54.728 1 48.862 48.362 49.362 -5.8653 0 0 0 0.26667 1 34752 34752 26.884 5.3467 1 23158 5553 15752 16045 27267 27267 0.05106036723384477 ILSEVQQAV 9 Unmodified _ILSEVQQAV_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.779482 985.544411 0.85131 0.00042036 -0.032843 -1.6217E-05 0.81847 0.00040414 493.77946480557995 47.008 0.15123 46.671 46.624 46.775 -0.33664 -0.033387 -3.5136E-05 NaN 57.471 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2756600 23159 5553 15752 16045 0.05106036723384477 ILSFLFSWF 9 Unmodified _ILSFLFSWF_ 0 0 0 REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.211181640625 3 387.211066 1158.61137 1.0294 0.00039858 -0.66809 -0.00025869 0.36128 0.00013989 387.210977873677 43.622 0.62944 38.857 38.618 39.248 -4.7648 118 39 4 0 0 0 0.41742 1 26416 26416 7.609 0 1 44226000 + 23160 21161 15753 16046 27268 27268 0.03840692005132951 ILSMETVNY 9 Unmodified _ILSMETVNY_ 0 0 0 REV__ENSG00000179046|ENST00000682553|TRIML2 REV__ENSG00000179046|ENST00000682553|TRIML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2655029296875 2 535.26535 1068.51615 0.28116 0.00015049 0.59988 0.00032109 0.88103 0.00047159 535.2657736195239 87.831 0.2374 87.831 87.715 87.953 0 18 10 2 0 0 0 0.52844 1 48626 48626 5.7319 1.4026 1 388580 + 23161 23081 15754 16047 27269 27269 -0.015370292482202785 ILSMETVNY 9 Unmodified _ILSMETVNY_ 0 0 0 REV__ENSG00000179046|ENST00000682553|TRIML2 REV__ENSG00000179046|ENST00000682553|TRIML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.263671875 2 535.26535 1068.51615 0.40168 0.00021501 -0.63159 -0.00033807 -0.22991 -0.00012306 535.264325865622 88.416 0.24998 87.912 87.75 88 -0.50423 22 11 3 0 0 0 0.40476 1 48327 48327 12.241 0.60036 1 601580 + 23162 23081 15754 16047 27270 27270 -0.015370292482202785 ILSMETVNY 9 Unmodified _ILSMETVNY_ 0 0 0 REV__ENSG00000179046|ENST00000682553|TRIML2 REV__ENSG00000179046|ENST00000682553|TRIML2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.26535 1068.51615 0.40168 0.00021501 -0.63159 -0.00033807 -0.22991 -0.00012306 535.264325865622 88.416 0.24998 87.912 87.75 88 -0.50423 0.040354 -0.0008828 NaN 12.241 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 601580 + 23163 23081 15754 16047 -0.015370292482202785 ILSMMEDNKQ 10 Unmodified _ILSMMEDNKQ_ 0 0 0 ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.526611328125 3 403.526508 1207.55769 0.52126 0.00021034 -0.095986 -3.8733E-05 0.42528 0.00017161 403.52639190807616 85.29 0.66003 84.788 84.388 85.048 -0.5015 90 48 3 0 0 0 0.56348 2 46606 46606;46699 7.9454 3.3052 1 5784900 23164 14283 15755 16048 27271;27272 27271 -0.037782165511998755 ILSMMEDNKQ 10 Unmodified _ILSMMEDNKQ_ 0 0 0 ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF ENST00000491547.1_1_1:14925349-15387014:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8617553710938 3 403.526508 1207.55769 0.21034 8.4879E-05 1.5145 0.00061116 1.7249 0.00069603 403.52707949565 98.773 0.41544 92.597 92.493 92.908 -6.1757 53 29 2 0 0 0 0.56348 1 65705 65705 7.9454 2.0773 1 67124000 23165 14283 15755 16048 27273 27273 -0.037782165511998755 ILSNLDRIV 9 Unmodified _ILSNLDRIV_ 0 0 0 REV__nc|ENSG00000105639|P52333-2|JAK3 REV__nc|ENSG00000105639|P52333-2|JAK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2720336914062 2 521.816399 1041.61824 1.3301 0.00069408 -0.50639 -0.00026424 0.82374 0.00042984 521.8161069536368 50.262 0.22385 50.213 50.087 50.31 -0.048824 13 10 2 0 0 0 0.21473 1 27209 27209 4.3292 0 1 947720 + 23166 18442 15756 16049 27274 27274 0.0991000488568261 ILSSNIISV 9 Unmodified _ILSSNIISV_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2851867675781 2 473.2844 944.554247 0.74709 0.00035358 -0.63065 -0.00029848 0.11643 5.5106E-05 473.2842027553262 68.004 0.42826 67.522 67.208 67.637 -0.48218 35 19 3 0 0 0 0.095405 2 37106 37106;37214 34.102 6.1184 1 5801300 23167 10275 15757 16050 27275;27276 27275 0.07975224728761532 ILSSNIISV 9 Unmodified _ILSSNIISV_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2853393554688 2 473.2844 944.554247 0.2498 0.00011822 1.3898 0.00065775 1.6396 0.00077598 473.2851601966794 67.454 0.4703 67.472 67.197 67.668 0.018036 48 23 3 0 0 0 0.016184 1 37018 37018 67.344 21.323 1 10780000 23168 10275 15757 16050 27277 27277 0.07975224728761532 ILSSNIISV 9 Unmodified _ILSSNIISV_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2854309082031 2 473.2844 944.554247 0.8094 0.00038308 0.048083 2.2757E-05 0.85749 0.00040583 473.2844952660102 75.304 0.59542 69.128 68.78 69.376 -6.1757 54 32 2 0 0 0 0.019303 2 49229 49229;49357 64.236 14.303 1 22064000 23169 10275 15757 16050 27278;27279 27278 0.07975224728761532 ILSTAEYCL 9 Carbamidomethyl (C) _ILSTAEYC(Carbamidomethyl (C))L_ ILSTAEYC(1)L ILSTAEYC(42)L 0 1 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000572607.1_1_17:454958-465900:-|nuORF nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2666625976562 2 535.26535 1068.51615 1.3189 0.00070596 0.26821 0.00014356 1.5871 0.00084953 535.2656810298124 97.277 0.57579 91.101 90.827 91.403 -6.1757 51 32 2 0 0 0 0.06187 1 64525 64525 42.095 7.9921 1 18931000 23170 5308 15758 16051 27280 27280 546 -0.015370292482430159 ILSTILRITS 10 Unmodified _ILSTILRITS_ 0 0 0 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 ENSG00000171133|ENST00000302681|OR2K2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.3519897460938 2 558.852981 1115.69141 1.7264 0.00096478 -1.1724 -0.00065517 0.554 0.00030961 558.8519556961043 106.4 0.36502 100.23 99.914 100.28 -6.1757 73 52 2 0 0 0 0.23991 1 71070 71070 0.35063 0 1 3670500 23171 8068 15759 16052 27281 27281 0.13819133608330958 ILSWRDTDTCV 11 Unmodified _ILSWRDTDTCV_ 0 0 0 REV__ENSG00000183508|ENST00000369448|TENT5C REV__ENSG00000183508|ENST00000369448|TENT5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.880126953125 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 78.237 1 78.237 77.737 78.737 0 0 0 0 0.94287 1 43482 43482 0.45452 0.1855 1 + 23172 23353 15760 16053 27282 27282 -0.02351782896471377 ILSWRDTDTCV 11 Unmodified _ILSWRDTDTCV_ 0 0 0 REV__ENSG00000183508|ENST00000369448|TENT5C REV__ENSG00000183508|ENST00000369448|TENT5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8795471191406 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 81.72 1 81.72 81.22 82.22 0 0 0 0 0.94299 1 45351 45351 0.36667 0.097654 1 + 23173 23353 15760 16053 27283 27283 -0.02351782896471377 ILTDADPEVC 10 Unmodified _ILTDADPEVC_ 0 0 0 nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1700744628906 3 359.170719 1074.49033 0.011182 4.0162E-06 0.39902 0.00014332 0.4102 0.00014733 359.1708213007333 62.271 0.25659 62.271 62.122 62.378 0 34 14 3 0 0 0 0.67033 1 34681 34681 3.3196 0 1 8604600 23174 10451 15761 16054 27284 27284 -0.04393923490488305 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.292236328125 2 480.292225 958.569897 0.3583 0.00017209 -1.1996 -0.00057616 -0.84129 -0.00040407 480.2914554049258 48.082 0.21076 48.082 47.959 48.17 0 15 10 2 0 0 0 0.18144 1 26355 26355 24.991 0.97039 1 3510800 23175 7651 15762 16055 27285 27285 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2928771972656 2 480.292225 958.569897 1.2246 0.00058814 -0.50434 -0.00024223 0.72021 0.00034591 480.2919325629633 55.117 0.50459 49.196 48.921 49.426 -5.9211 76 31 3 0 0 0 0.036857 2 35003 35003;35150 51.63 13.656 1 105500000 23176 7651 15762 16055 27286;27287 27286 0.0889551124580521 ILTDITKGV 9 Unmodified _ILTDITKGV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.292225 958.569897 0.5811 0.0002791 -2.3537 -0.0011304 -1.7726 -0.00085134 480.29115712050975 48.261 0.32891 47.895 47.737 48.066 -0.36636 -0.093557 -0.00041174 NaN 24.991 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 25029000 23177 7651 15762 16055 0.0889551124580521 ILTDVVIVV 9 Unmodified _ILTDVVIVV_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.8135681152344 2 485.812793 969.611034 0.50476 0.00024522 1.2161 0.00059082 1.7209 0.00083604 485.81328049747884 99.694 0.37283 93.518 93.228 93.6 -6.1757 48 23 3 0 0 0 0.023164 2 66344 66344;66516 60.39 15.983 1 114930000 23178 3009 15763 16056 27288;27289 27288 0.12501272285282994 ILTEAIKAC 9 Carbamidomethyl (C) _ILTEAIKAC(Carbamidomethyl (C))_ ILTEAIKAC(1) ILTEAIKAC(42) 0 1 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MSMS AL20221201_MKP_PDAC_01 4 509.7844543457031 2 509.78371 1017.55287 NaN NaN NaN NaN NaN NaN NaN 42.745 1 38.06 37.56 38.56 -4.6846 0 0 0 0.10759 1 25861 25861 41.84 15.498 1 23179 4012 15764 16057 27290 27290 405 0.04479267368344608 ILTERGYSF 9 Unmodified _ILTERGYSF_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2852172851562 2 543.284931 1084.55531 0.46094 0.00025042 0.19901 0.00010812 0.65995 0.00035854 543.2849887367092 47.275 0.30659 46.922 46.778 47.085 -0.3526 43 14 4 0 0 0 0.021948 2 25301 25301;25404 61.602 29.296 1 33037000 23180 1163;5538;15509 15765 16058 27291;27292 27291 0.016414390976706272 ILTERGYSF 9 Unmodified _ILTERGYSF_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2850952148438 2 543.284931 1084.55531 1.1492 0.00062434 0.085901 4.6669E-05 1.2351 0.00067101 543.2849571046813 46.99 0.18272 46.956 46.814 46.996 -0.033421 19 8 3 0 0 0 0.011291 1 25275 25275 76.825 30.804 1 6070000 23181 1163;5538;15509 15765 16058 27293 27293 0.016414390976706272 ILTERGYSF 9 Unmodified _ILTERGYSF_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000450451.1_1_1:238090483-238090852:+|nuORF;ENST00000570019.1_1_15:34666200-34666557:-|nuORF;ENST00000436287.1_1_1:224051789-224052101:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2858276367188 2 543.284931 1084.55531 0.80961 0.00043985 3.1106 0.00169 3.9202 0.0021298 543.2862656454845 52.96 0.29965 47.155 47.05 47.35 -5.8042 25 16 2 0 0 0 0.040683 1 33509 33509 49.554 7.4597 1 23442000 23182 1163;5538;15509 15765 16058 27294 27294 0.016414390976706272 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2879028320312 2 502.28714 1002.55973 0.34158 0.00017157 -0.59882 -0.00030078 -0.25723 -0.0001292 502.28676980644747 52.454 0.33064 52.454 52.287 52.617 0 33 14 3 0 0 0 0.03327 1 29014 29014 53.576 13.618 1 5660500 23183 16226 15766 16059 27295 27295 0.05854903520582866 ILTETINTV 9 Unmodified _ILTETINTV_ 0 0 0 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.28714 1002.55973 -0.026737 -1.343E-05 -0.5656 -0.00028409 -0.59234 -0.00029752 502.2875306710101 52.961 0.30157 52.509 52.381 52.682 -0.45173 0.02746 2.6443E-05 NaN 53.576 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2491800 23184 16226 15766 16059 0.05854903520582866 ILTNVVPKM 9 Oxidation (M) _ILTNVVPKM(Oxidation (M))_ ILTNVVPKM(1) ILTNVVPKM(52) 0 0 1 nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER nc|ENSG00000165983|Q96BW5-2|PTER nc|ENSG00000165983|Q96BW5-2|PTER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8019409179688 2 515.801903 1029.58925 0.18664 9.6271E-05 -1.2949 -0.00066791 -1.1083 -0.00057164 515.801099207721 38.205 0.41357 38.222 37.922 38.336 0.01704 39 18 3 0 0 0 0.036857 1 20291 20291 51.63 22.548 1 5869700 23185 7416 15767 16060 27296 27296 1279 0.07564144265074901 ILTVDETELV 10 Unmodified _ILTVDETELV_ 0 0 0 REV__nc|ENSG00000182150|Q5T890-2|ERCC6L2 REV__nc|ENSG00000182150|Q5T890-2|ERCC6L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5690307617188 3 377.8763 1130.60707 0.44133 0.00016677 0.41502 0.00015683 0.85635 0.0003236 377.8766735122067 50.921 0.26434 50.507 50.376 50.64 -0.41351 17 12 2 0 0 0 0.23922 1 27380 27380 3.8763 1.3778 1 2747400 + 23186 23245 15768 16061 27297 27297 0.04699138000910352 ILVGLLHMV 9 Oxidation (M) _ILVGLLHM(Oxidation (M))V_ ILVGLLHM(1)V ILVGLLHM(46)V 0 0 1 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8067626953125 2 505.806988 1009.59942 0.70751 0.00035787 -0.40594 -0.00020533 0.30158 0.00015254 505.8067456585218 68.621 0.40347 68.646 68.436 68.84 0.025154 35 18 3 0 0 0 0.047696 1 37664 37664 45.75 17.577 1 4897600 23187 3701 15769 16062 27298 27298 650 0.0950075199029925 ILVGQLELI 9 Unmodified _ILVGQLELI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.316162109375 2 499.318243 996.621933 0.24128 0.00012048 0.37444 0.00018696 0.61572 0.00030744 499.3182590686578 94.695 0.30923 94.274 94.111 94.42 -0.42044 27 15 2 0 0 0 0.37804 1 51683 51683 13.508 4.1604 1 865960 23188 8367 15770 16063 27299 27299 0.12348674659551762 ILVGQLELI 9 Unmodified _ILVGQLELI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3190612792969 2 499.318243 996.621933 1.3652 0.00068165 -0.14695 -7.3374E-05 1.2182 0.00060828 499.31807556230325 100.21 0.1155 94.036 93.957 94.072 -6.1757 12 6 2 0 0 0 0.10925 1 66969 66969 32.117 3.6301 1 17334000 23189 8367 15770 16063 27300 27300 0.12348674659551762 ILVIFYFQI 9 Unmodified _ILVIFYFQI_ 0 0 0 nc|ENSG00000171310|Q9NPF2-2|CHST11 nc|ENSG00000171310|Q9NPF2-2|CHST11 nc|ENSG00000171310|Q9NPF2-2|CHST11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5611267089844 3 385.898599 1154.67397 0.88439 0.00034128 1.7893 0.00069048 2.6737 0.0010318 385.8991678380621 46.337 0.24482 41.257 41.1 41.345 -5.0805 23 16 2 0 0 0 0.18811 1 28571 28571 12.241 0 1 14093000 23190 16382 15771 16064 27301 27301 0.10281838073319705 ILVKEKGDR 9 Unmodified _ILVKEKGDR_ 0 0 0 REV__nc|ENSG00000109832|Q9UHL0-2|DDX25 REV__nc|ENSG00000109832|Q9UHL0-2|DDX25 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.30078125 2 529.321848 1056.62914 0.41857 0.00022156 -2.0512 -0.0010857 -1.6326 -0.00086417 529.3203668434701 100.82 0.10548 100.77 100.71 100.82 -0.04216 9 3 3 0 0 0 0.209 1 56010 56010 7.2892 1.0834 1 3918000 + 23191 18673 15772 16065 27302 27302 0.10309407260001535 ILVKHLTNV 9 Unmodified _ILVKHLTNV_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000506020.5_1_4:148867718-148993229:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8278198242188 2 518.829309 1035.64407 1.2812 0.00066472 -1.6578 -0.00086012 -0.37661 -0.0001954 518.828446151834 37.331 0.37244 33.048 32.857 33.229 -4.2835 40 21 3 0 0 0 0.012228 2 21864 21864;21986 74.2 28.5 1 14609000 23192 33 15773 16066 27303;27304 27303 0.12766899127996112 ILVSQLEQL 9 Unmodified _ILVSQLEQL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.8115234375 2 521.810782 1041.60701 NaN NaN NaN NaN NaN NaN NaN 75.414 1 74.937 74.437 75.437 -0.47714 0 0 0 0.39043 1 41282 41282 20.454 3.5113 1 23193 4231 15774 16067 27305 27305 0.0878718279154782 ILVSQLEQL 9 Unmodified _ILVSQLEQL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MSMS AL20221201_MKP_PDAC_01 4 521.8109741210938 2 521.810782 1041.60701 NaN NaN NaN NaN NaN NaN NaN 83.015 1 76.84 76.34 77.34 -6.1757 0 0 0 0.18753 1 54562 54562 32.305 6.9062 1 23194 4231 15774 16067 27306 27306 0.0878718279154782 ILVSTLPVA 9 Unmodified _ILVSTLPVA_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7913818359375 2 456.791861 911.569169 0.37267 0.00017023 0.57314 0.00026181 0.94581 0.00043204 456.79212337118196 71.255 0.2467 70.778 70.659 70.905 -0.47735 15 10 2 0 0 0 0.068777 1 39018 39018 40.449 8.3316 1 1039900 23195 7922 15775 16068 27307 27307 0.10984716596760791 ILVSTLPVA 9 Unmodified _ILVSTLPVA_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 456.791861 911.569169 1.2958 0.00059192 -0.37983 -0.0001735 0.91598 0.00041841 456.79147114874655 70.78 0.27816 70.816 70.658 70.936 0.035515 0.018841 -0.00023944 NaN 40.449 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1064000 23196 7922 15775 16068 0.10984716596760791 ILWAKSVR 8 Unmodified _ILWAKSVR_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.8019714355469 2 486.803094 971.591636 -0.061995 -3.0179E-05 -0.55339 -0.00026939 -0.61538 -0.00029957 486.8026521445624 51.416 0.33833 51.002 50.778 51.117 -0.41351 30 17 2 0 0 0 0.64853 1 27697 27697 21.747 5.8995 1 9509500 + 23197 24247 15776 16069 27308 27308 0.10470360785029698 ILWAKSVR 8 Unmodified _ILWAKSVR_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.803094 971.591636 -0.061995 -3.0179E-05 -0.55339 -0.00026939 -0.61538 -0.00029957 486.8026521445624 51.416 0.33833 51.002 50.778 51.117 -0.41351 0.0017306 -0.0001593 NaN 21.747 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 9509500 + 23198 24247 15776 16069 0.10470360785029698 ILWAKSVR 8 Unmodified _ILWAKSVR_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 486.803094 971.591636 0.34312 0.00016703 -0.30939 -0.00015061 0.03372 1.6415E-05 486.8027853201724 51.052 0.30396 50.999 50.862 51.166 -0.053871 -0.0017306 7.8251E-05 NaN 21.747 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5050800 + 23199 24247 15776 16069 0.10470360785029698 ILWALLFAF 9 Unmodified _ILWALLFAF_ 0 0 0 nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3251953125 2 547.325871 1092.63719 0.053406 2.923E-05 0.907 0.00049643 0.96041 0.00052566 547.3261584172452 53.271 0.38031 53.207 52.981 53.361 -0.063423 41 18 3 0 0 0 0.46577 1 28847 28847 9.3474 0.75416 1 4332000 23200 1106 15777 16070 27309 27309 0.09457586247390282 ILWEHCIRL 9 Carbamidomethyl (C) _ILWEHC(Carbamidomethyl (C))IRL_ ILWEHC(1)IRL ILWEHC(48)IRL 0 1 0 nc|ENSG00000004766|Q96JG6-3|VPS50;ENSG00000004766|ENST00000305866|VPS50 nc|ENSG00000004766|Q96JG6-3|VPS50 nc|ENSG00000004766|Q96JG6-3|VPS50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8939819335938 3 413.893742 1238.6594 0.15143 6.2678E-05 0.60776 0.00025155 0.7592 0.00031423 413.89382037172084 60.166 0.24471 60.113 59.994 60.239 -0.053062 20 13 2 0 0 0 0.044296 1 32803 32803 47.594 30.481 1 7327800 23201 280 15778 16071 27310 27310 10 0.0496144265350722 ILWEHLEIL 9 Unmodified _ILWEHLEIL_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.334716796875 2 583.334424 1164.6543 0.38526 0.00022474 0.40714 0.0002375 0.7924 0.00046224 583.3345781553144 89.425 0.25085 88.924 88.8 89.05 -0.50171 14 10 2 0 0 0 0.41742 1 48910 48910 11.64 2.2572 1 402830 23202 4656 15779 16072 27311 27311 0.07855462062548213 ILWEHLEIL 9 Unmodified _ILWEHLEIL_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.335693359375 2 583.334424 1164.6543 0.95794 0.0005588 0.047188 2.7526E-05 1.0051 0.00058632 583.3350707795721 99.482 0.13798 93.306 93.228 93.365 -6.1757 18 8 3 0 0 0 0.00856 1 66270 66270 100.37 36.135 1 40391000 23203 4656 15779 16072 27312 27312 0.07855462062548213 ILWETVPSM 9 Unmodified _ILWETVPSM_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7804565429688 2 538.27826 1074.54197 0.63287 0.00034066 1.5807 0.00085084 2.2135 0.0011915 538.278694009164 81.438 0.2759 80.945 80.815 81.091 -0.49247 27 11 3 0 0 0 0.28047 1 44601 44601 18.135 10.225 1 679890 23204 1157 15780 16073 27313 27313 0.00767864994077172 ILWETVPSM 9 Unmodified _ILWETVPSM_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.278076171875 2 538.27826 1074.54197 0.69765 0.00037553 0.12767 6.8723E-05 0.82533 0.00044426 538.2783299539365 80.83 0.29989 80.888 80.762 81.062 0.057587 20 11 2 0 0 0 0.12841 1 44699 44699 30.225 9.7712 1 2083500 23205 1157 15780 16073 27314 27314 0.00767864994077172 ILWETVPSM 9 Oxidation (M) _ILWETVPSM(Oxidation (M))_ ILWETVPSM(1) ILWETVPSM(78) 0 0 1 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.275634765625 2 546.275718 1090.53688 1.0009 0.00054674 -1.2104 -0.00066121 -0.20953 -0.00011446 546.2750889721303 63.994 0.53584 63.983 63.762 64.298 -0.010529 50 26 3 0 0 0 0.010877 1 34991 34991 77.984 40.01 1 10230000 23206 1157 15780 16074 27315 27315 192 -0.004764388685543963 ILWLYFYRG 9 Unmodified _ILWLYFYRG_ 0 0 0 nc|ENSG00000211784|A0A0B4J240|TRAV10 nc|ENSG00000211784|A0A0B4J240|TRAV10 nc|ENSG00000211784|A0A0B4J240|TRAV10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.8365478515625 2 615.837134 1229.65972 NaN NaN NaN NaN NaN NaN NaN 103.53 1 103.43 102.93 103.93 -0.10458 0 0 0 0.85798 1 56473 56473 0.52476 0.12405 1 23207 16530 15781 16075 27316 27316 0.05407185645026402 ILWPVEITL 9 Unmodified _ILWPVEITL_ 0 0 0 ENST00000372348.6_1_9:133729537-133729609:+|nuORF ENST00000372348.6_1_9:133729537-133729609:+|nuORF ENST00000372348.6_1_9:133729537-133729609:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 542.3274536132812 2 542.326068 1082.63758 NaN NaN NaN NaN NaN NaN NaN 101.79 1 95.617 95.117 96.117 -6.1757 0 0 0 0.026323 1 68330 68330 70.716 42.229 1 23208 12378 15782 16076 27317 27317 0.09956961176612822 ILWREITF 8 Unmodified _ILWREITF_ 0 0 0 ENST00000507004.1_1_5:43298754-43298856:-|nuORF ENST00000507004.1_1_5:43298754-43298856:-|nuORF ENST00000507004.1_1_5:43298754-43298856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3092041015625 2 539.30821 1076.60187 0.65845 0.00035511 1.9464 0.0010497 2.6048 0.0014048 539.3092425107751 52.358 0.17987 52.299 52.168 52.348 -0.058918 15 8 2 0 0 0 0.63706 1 28368 28368 28.487 0 1 3015100 23209 14532 15783 16077 27318 27318 0.06662923719591163 ILWSEAIFL 9 Unmodified _ILWSEAIFL_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3095092773438 2 546.310418 1090.60628 -0.4847 -0.0002648 -1.0413 -0.00056886 -1.526 -0.00083365 546.3098868610223 101.19 0.10065 101.15 101.09 101.19 -0.04216 7 3 3 0 0 0 0.37804 1 56238 56238 13.508 0.97634 1 5921600 23210 1923 15784 16078 27319 27319 0.06460388142522788 ILWSEAIFL 9 Unmodified _ILWSEAIFL_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3103637695312 2 546.310418 1090.60628 0.57634 0.00031486 0.99163 0.00054174 1.568 0.0008566 546.3109444115504 101.77 0.085022 95.592 95.545 95.63 -6.1757 19 7 3 0 0 0 0.019979 1 68301 68301 63.563 9.9873 1 67659000 23211 1923 15784 16078 27320 27320 0.06460388142522788 ILWSTMVAL 9 Unmodified _ILWSTMVAL_ 0 0 0 REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 517.290283203125 2 517.291171 1032.56779 NaN NaN NaN NaN NaN NaN NaN 94.587 1 88.411 87.911 88.911 -6.1757 0 0 0 0.15618 1 62650 62650 36.044 0 1 + 23212 27724 15785 16079 27321 27321 0.05280759236325139 ILYDKLEKI 9 Unmodified _ILYDKLEKI_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2321166992188 3 378.897147 1133.66961 0.68452 0.00025936 -0.12747 -4.8297E-05 0.55706 0.00021107 378.89710828257006 47.179 0.21689 46.826 46.722 46.938 -0.3526 17 10 2 0 0 0 0.040337 1 25283 25283 49.742 11.127 1 4893300 23213 4726 15786 16080 27322 27322 0.1081232885976533 ILYELYGTLL 10 Unmodified _ILYELYGTLL_ 0 0 0 REV__ENSG00000115919|ENST00000264170|KYNU REV__ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8958129882812 3 399.897035 1196.66928 -0.19988 -7.9931E-05 -0.74038 -0.00029608 -0.94026 -0.00037601 399.8965198871743 33.005 0.20338 33.035 32.937 33.14 0.029743 20 8 3 0 0 0 0.66652 1 17373 17373 6.6304 0.43853 1 1304000 + 23214 19015 15787 16081 27323 27323 0.07880909139907999 ILYGEVEKL 9 Unmodified _ILYGEVEKL_ 0 0 0 nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B;nc|ENSG00000038274|Q9NZL9-3|MAT2B;nc|ENSG00000038274|Q9NZL9-4|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3058471679688 2 532.305332 1062.59611 0.12176 6.4811E-05 0.31331 0.00016678 0.43507 0.00023159 532.3054555029047 51.833 0.22012 51.833 51.71 51.93 0 15 9 2 0 0 0 0.017075 1 28651 28651 66.457 35.82 1 6022100 23215 633 15788 16082 27324 27324 0.0673178041729443 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2308044433594 3 357.23046 1068.66955 0.58772 0.00020995 0.23748 8.4835E-05 0.8252 0.00029479 357.2305126782304 56.926 0.31705 56.857 56.678 56.995 -0.068741 47 15 4 0 0 0 0.023481 2 30940 30940;31039 60.074 38.537 1 55909000 23216 7801 15789 16083 27325;27326 27325 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.341796875 2 535.342052 1068.66955 0.69326 0.00037113 0.047177 2.5256E-05 0.74043 0.00039639 535.3419853137605 56.924 0.21502 56.856 56.72 56.935 -0.068741 26 10 3 0 0 0 0.017075 1 30953 30953 74.423 33.974 1 8149500 23217 7801 15789 16083 27327 27327 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2312622070312 3 357.23046 1068.66955 1.8121 0.00064733 -0.097305 -3.476E-05 1.7148 0.00061257 357.23041989691563 86.939 0.71225 80.764 80.434 81.146 -6.1757 100 38 3 0 0 0 0.047788 4 57282 57161;57282;57400;57529 45.7 26.443 1 50562000 23218 7801 15789 16083 27328;27329;27330;27331 27329 0.13796373650416172 ILYGKIIHL 9 Unmodified _ILYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3433227539062 2 535.342052 1068.66955 1.0498 0.000562 0.12495 6.6888E-05 1.1747 0.00062889 535.3420382349656 87 0.56406 80.824 80.528 81.092 -6.1757 58 30 2 0 0 0 0.0094097 3 57336 57223;57336;57464 92.822 52.865 1 16389000 23219 7801 15789 16083 27332;27333;27334 27333 0.13796373650416172 ILYHLLESL 9 Unmodified _ILYHLLESL_ 0 0 0 REV__ENSG00000153551|ENST00000334983|CMTM7 REV__ENSG00000153551|ENST00000334983|CMTM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8193969726562 2 550.82115 1099.62775 0.57302 0.00031563 -2.3186 -0.0012771 -1.7455 -0.00096148 550.8192185711758 71.585 0.26532 71.109 70.976 71.242 -0.47609 27 10 5 0 0 0 0.078417 1 39174 39174 38.151 8.3106 1 1302500 + 23220 21177 15790 16084 27335 27335 0.08191773171233763 ILYPKTLFL 9 Unmodified _ILYPKTLFL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.344482421875 2 554.344261 1106.67397 1.2975 0.00071925 1.3386 0.00074203 2.636 0.0014613 554.3446085069791 97.833 0.19602 91.658 91.553 91.749 -6.1757 23 13 2 0 0 0 0.037118 1 64825 64825 55.503 7.7541 1 36685000 23221 5112 15791 16085 27336 27336 0.12489838073315696 ILYQGKLFV 9 Unmodified _ILYQGKLFV_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8273315429688 2 540.826235 1079.63792 NaN NaN NaN NaN NaN NaN NaN 64.572 1 64.561 64.061 65.061 -0.010529 0 0 0 0.15231 1 35363 35363 48.346 12.302 1 23222 6382 15792 16086 27337 27337 0.10128380896458111 ILYRPIQKL 9 Unmodified _ILYRPIQKL_ 0 0 0 REV__nc|ENSG00000162688|P35573-2|AGL REV__nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.366943359375 2 572.366059 1142.71756 1.3123 0.0007511 -0.40242 -0.00023033 0.90986 0.00052077 572.3660070539811 87.876 1.1072 81.701 81.203 82.311 -6.1757 87 61 2 0 0 0 0.019303 2 58015 58015;58147 64.236 2.8788 1 19987000 + 23223 21678 15793 16087 27338;27339 27338 0.15191447570464334 ILYRQYFYIYK 11 Unmodified _ILYRQYFYIYK_ 0 0 0 REV__ENST00000502773.5_1_4:157683422-157683533:-|nuORF REV__ENST00000502773.5_1_4:157683422-157683533:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.4317016601562 2 785.426845 1568.83914 3.9371 0.0030923 1.1129 0.0008741 5.05 0.0039664 785.9292618750918 98.351 0.15929 98.322 98.244 98.404 -0.028282 11 5 3 0 0 0 0.7326 1 54649 54649 1.1933 0.88631 1 1058200 + 23224 28029 15794 16088 27340 27340 0.07747025142316488 IMACGDYY 8 Unmodified _IMACGDYY_ 0 0 0 REV__ENSG00000172890|ENST00000319023|NADSYN1 REV__ENSG00000172890|ENST00000319023|NADSYN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.1880493164062 2 468.185514 934.356475 NaN NaN NaN NaN NaN NaN NaN 42.37 1 42.37 41.87 42.87 0 0 0 0 0.9706 1 22932 22932 6.3541 0.59368 1 + 23225 22684 15795 16089 27341 27341 -0.1133286079705158 IMAKHFILFTN 11 Unmodified _IMAKHFILFTN_ 0 0 0 ENST00000500698.1_1_11:9778373-9781063:-|nuORF ENST00000500698.1_1_11:9778373-9781063:-|nuORF ENST00000500698.1_1_11:9778373-9781063:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.3250732421875 2 667.868108 1333.72166 0.26259 0.00017538 0.84172 0.00056216 1.1043 0.00073754 667.868854155223 58.362 0.26379 57.871 57.741 58.005 -0.49079 26 12 3 0 0 0 0.304 1 31727 31727 3.5965 0 1 2428300 23226 14440 15796 16090 27342 27342 0.06815169001856702 IMDATNILV 9 Oxidation (M) _IM(Oxidation (M))DATNILV_ IM(1)DATNILV IM(64)DATNILV 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3 nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2691650390625 2 503.267893 1004.52123 0.4941 0.00024867 0.12109 6.0943E-05 0.6152 0.00030961 503.2683793386755 58.918 0.49218 58.918 58.677 59.169 0 57 21 3 0 0 0 0.019303 2 32734 32734;32863 64.236 24.287 1 9362000 23227 7784 15797 16091 27343;27344 27343 1327 0.019152746144072808 IMDATNILV 9 Oxidation (M) _IM(Oxidation (M))DATNILV_ IM(1)DATNILV IM(64)DATNILV 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3 nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2706909179688 2 503.267893 1004.52123 -0.10453 -5.2605E-05 3.1617 0.0015912 3.0572 0.0015386 503.27001858328856 59.57 0.60818 59.079 58.685 59.293 -0.49079 57 28 3 0 0 0 0.019303 1 32367 32367 64.236 24.287 1 4445600 23228 7784 15797 16091 27345 27345 1327 0.019152746144072808 IMDATNILV 9 Unmodified _IMDATNILV_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3 nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2705993652344 2 495.270435 988.526318 0.65939 0.00032658 1.5295 0.00075753 2.1889 0.0010841 495.2706810140242 71.914 0.25913 71.437 71.266 71.525 -0.47609 19 9 3 0 0 0 0.32871 1 39334 39334 15.847 1.0089 1 737640 23229 7784 15797 16092 27346 27346 0.031595784770274804 IMDATNILV 9 Unmodified _IMDATNILV_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3 nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2720947265625 2 495.270435 988.526318 1.0857 0.0005377 0.47085 0.0002332 1.5565 0.0007709 495.27079569563034 79.97 0.51826 73.795 73.518 74.037 -6.1757 52 31 2 0 0 0 0.031062 1 52485 52485 54.774 7.0249 1 29463000 23230 7784 15797 16092 27347 27347 0.031595784770274804 IMDGKSLNFG 10 Unmodified _IMDGKSLNFG_ 0 0 0 ENST00000465381.5_1_20:13514760-13610725:-|nuORF;ENST00000480436.5_1_20:13415759-13610725:-|nuORF;ENSG00000089123|ENST00000337743|TASP1 ENST00000465381.5_1_20:13514760-13610725:-|nuORF ENST00000465381.5_1_20:13514760-13610725:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7532348632812 2 541.270967 1080.52738 -0.12351 -6.6852E-05 1.9055 0.0010314 1.782 0.00096457 541.7744076152093 60.283 0.25599 59.792 59.63 59.886 -0.49079 31 12 3 0 0 0 0.23227 1 32772 32772 10.824 3.5347 1 12319000 23231 1516 15798 16093 27348 27348 -0.00966207154078802 IMDTYFQDVRM 11 Unmodified _IMDTYFQDVRM_ 0 0 0 nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30 nc|ENSG00000134249|Q9UKF2-2|ADAM30 nc|ENSG00000134249|Q9UKF2-2|ADAM30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.5529479980469 3 473.552946 1417.63701 0.78556 0.00037201 -1.4485 -0.00068594 -0.66293 -0.00031393 473.5523016839355 73.242 0.26444 72.766 72.606 72.871 -0.47588 20 11 3 0 0 0 0.73115 1 40054 40054 0.45452 0.046251 1 1033600 23232 4576 15799 16094 27349 27349 -0.0551056959707239 IMEDYFAY 8 Unmodified _IMEDYFAY_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.76171875 2 526.225694 1050.43683 1.1055 0.00058173 -0.99196 -0.000522 0.11352 5.9738E-05 526.225270560251 71.895 0.27113 65.719 65.573 65.844 -6.1757 26 15 2 0 0 0 8.7369 1 47058 47058 6.3541 0 1 16097000 23233 4023 15800 16095 27350 27350 -0.08636676202354465 IMEEMERR 8 Unmodified _IMEEMERR_ 0 0 0 nc|ENSG00000143355|Q9NQ69-3|LHX9;nc|ENSG00000143355|Q9NQ69-4|LHX9;nc|ENSG00000143355|Q9NQ69-2|LHX9;ENSG00000143355|ENST00000367387|LHX9 nc|ENSG00000143355|Q9NQ69-3|LHX9 nc|ENSG00000143355|Q9NQ69-3|LHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1766357421875 3 365.17581 1092.5056 1.3659 0.00049879 0.91726 0.00033496 2.2831 0.00083375 365.1760979622864 45.909 0.48001 40.954 40.682 41.162 -4.9549 77 31 3 0 0 0 0.75262 1 28265 28265 9.3831 2.7597 1 44472000 23234 5496 15801 16096 27351 27351 -0.03695335174279535 IMEPKTIY 8 Unmodified _IMEPKTIY_ 0 0 0 REV__ENSG00000227124|ENST00000652011|ZNF717 REV__ENSG00000227124|ENST00000652011|ZNF717 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7646179199219 2 497.767529 993.520504 NaN NaN NaN NaN NaN NaN NaN 4.2564 1 4.1835 3.6835 4.6835 -0.072869 0 0 0 0.97444 1 2105 2105 0.69038 0 1 + 23235 24396 15802 16097 27352 27352 0.023484799653488153 IMERDYAY 8 Unmodified _IMERDYAY_ 0 0 0 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.796142578125 2 530.742042 1059.46953 2.0761 0.0011019 -1.9165 -0.0010172 0.15958 8.4694E-05 530.7411817978765 100.12 0.24876 100.09 99.934 100.18 -0.036301 15 8 3 0 0 0 8.7369 1 55586 55586 5.2307 0.47466 1 10357000 + 23236 29686 15803 16098 27353 27353 -0.05782469079508701 IMETGAEHFKK 11 Unmodified _IMETGAEHFKK_ 0 0 0 REV__nc|ENSG00000121075|P57082|TBX4 REV__nc|ENSG00000121075|P57082|TBX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883056640625 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 36.833 1 36.855 36.355 37.355 0.021545 0 0 0 0.94165 1 19530 19530 0.45452 0 1 + 23237 19278 15804 16099 27354 27354 0.010571113457899628 IMFYRRGMYTK 11 Unmodified _IMFYRRGMYTK_ 0 0 0 ENST00000377989.8_2_6:25138607-25138802:-|nuORF ENST00000377989.8_2_6:25138607-25138802:-|nuORF ENST00000377989.8_2_6:25138607-25138802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.5887756347656 3 489.252942 1464.737 -0.3579 -0.0001751 2.4529 0.0012001 2.095 0.001025 489.2539423213797 19.085 0.12891 19.085 19.018 19.147 0 12 7 3 0 0 0 0.71341 1 9532 9532 1.2148 0 1 1388700 23238 12537 15805 16100 27355 27355 0.023217125273959027 IMFYRRGMYTK 11 Unmodified _IMFYRRGMYTK_ 0 0 0 ENST00000377989.8_2_6:25138607-25138802:-|nuORF ENST00000377989.8_2_6:25138607-25138802:-|nuORF ENST00000377989.8_2_6:25138607-25138802:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2540283203125 3 489.252942 1464.737 1.1333 0.00055449 1.3203 0.00064594 2.4536 0.0012004 489.2535956179981 20.679 0.3856 17.986 17.781 18.167 -2.693 55 24 3 0 0 0 0.68427 2 10976 10976;11078 2.6312 0.37851 1 8176600 23239 12537 15805 16100 27356;27357 27356 0.023217125273959027 IMGNKKPF 8 Unmodified _IMGNKKPF_ 0 0 0 REV__ENST00000228434.7_1_12:9905371-9905509:-|nuORF REV__ENST00000228434.7_1_12:9905371-9905509:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 468.3051147460938 2 467.762581 933.510608 0.79781 0.00037318 -1.5719 -0.00073527 -0.77409 -0.00036209 467.7614765900196 39.203 0.6822 34.752 34.298 34.98 -4.4509 50 42 2 0 0 0 8.7369 1 23078 23078 5.2307 0 1 5543800 + 23240 24800 15806 16101 27358 27358 0.041193367506366485 IMGTSYKKA 9 Unmodified _IMGTSYKKA_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2250671386719 2 499.770603 997.526652 0.92953 0.00046455 -3.733 -0.0018657 -2.8035 -0.0014011 499.7690260274387 51.338 0.22377 51.338 51.208 51.431 0 14 9 2 0 0 0 0.18118 1 28319 28319 18.135 3.5533 1 1219000 + 23241 22558 15807 16102 27359 27359 0.027789981968680877 IMHDCVVKL 9 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))HDC(Carbamidomethyl (C))VVKL_ IMHDC(1)VVKL IM(1)HDCVVKL IMHDC(42)VVKL IM(42)HDCVVKL 0 1 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5277404785156 3 377.528072 1129.56239 -0.17221 -6.5015E-05 0.13732 5.1843E-05 -0.03489 -1.3172E-05 377.5281018550656 32.497 0.23637 32.367 32.222 32.459 -0.12915 20 10 2 0 0 0 0.062454 1 16906 16906 41.956 21.541 1 3490500 23242 3070;16132;1143 15808 16103 27360 27360 101 190 0.002787123822599824 IMHDCVVKL 9 Carbamidomethyl (C),Oxidation (M) _IM(Oxidation (M))HDC(Carbamidomethyl (C))VVKL_ IMHDC(1)VVKL IM(1)HDCVVKL IMHDC(46)VVKL IM(46)HDCVVKL 0 1 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7877197265625 2 565.788469 1129.56239 1.0693 0.00060499 -1.0874 -0.00061523 -0.018107 -1.0245E-05 565.7878158212986 36.174 0.37775 31.982 31.741 32.118 -4.1928 36 22 2 0 0 0 0.047788 1 21120 21120 45.7 28.757 1 10149000 23243 3070;16132;1143 15808 16103 27361 27361 101 190 0.002787123822599824 IMHEARERRRE 11 Unmodified _IMHEARERRRE_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671;ENST00000461374.1_1_22:25437297-25445586:+|nuORF;ENST00000494730.2_1_22:25436553-25570783:+|nuORF ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.9283752441406 3 494.928397 1481.76336 -0.28063 -0.00013889 0.92448 0.00045755 0.64385 0.00031866 494.9288911438835 24.366 0.19784 24.366 24.312 24.51 0 15 9 2 0 0 0 0.73506 1 12465 12465 0.32927 0 1 490890 23244 9905 15809 16104 27362 27362 0.041751177430796815 IMHEARERRRE 11 Unmodified _IMHEARERRRE_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671;ENST00000461374.1_1_22:25437297-25445586:+|nuORF;ENST00000494730.2_1_22:25436553-25570783:+|nuORF ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2632446289062 3 494.928397 1481.76336 NaN NaN NaN NaN NaN NaN NaN 24.653 1 24.652 24.152 25.152 -0.0016766 0 0 0 0.93669 1 12604 12604 2.2527 0 1 23245 9905 15809 16104 27363 27363 0.041751177430796815 IMHEARERRRE 11 Unmodified _IMHEARERRRE_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671;ENST00000461374.1_1_22:25437297-25445586:+|nuORF;ENST00000494730.2_1_22:25436553-25570783:+|nuORF ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.9281921386719 3 494.928397 1481.76336 0.4655 0.00023039 -0.29376 -0.00014539 0.17174 8.4998E-05 494.9282790019254 27.674 0.58261 24.637 24.317 24.9 -3.0365 61 29 3 0 0 0 0.5229 2 15237 15237;15353 12.228 9.3843 1 20481000 23246 9905 15809 16104 27364;27365 27364 0.041751177430796815 IMHLWPPIL 9 Unmodified _IMHLWPPIL_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2380981445312 2 560.322805 1118.63106 0.7341 0.00041133 2.064 0.0011565 2.7981 0.0015679 560.324563072303 71.808 0.86598 71.332 70.886 71.752 -0.47609 60 35 2 0 0 0 0.17158 1 39451 39451 20.871 1.6142 1 488630 23247 10031 15810 16105 27366 27366 0.07648744744233227 IMHPHPPQ 8 Unmodified _IMHPHPPQ_ 0 0 0 ENST00000468415.6_1_3:58739536-58855213:-|nuORF;nc|ENSG00000163689|Q6ZVT6-2|CFAP20DC;nc|ENSG00000163689|Q6ZVT6|CFAP20DC;ENSG00000163689|ENST00000482387|CFAP20DC ENST00000468415.6_1_3:58739536-58855213:-|nuORF ENST00000468415.6_1_3:58739536-58855213:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7438049316406 2 478.742179 955.469806 NaN NaN NaN NaN NaN NaN NaN 16.464 1 16.464 15.964 16.964 0 0 0 0 0.97444 1 8030 8030 2.5775 0 1 23248 7050 15811 16106 27367 27367 -0.00971004568987155 IMHPVSGKHIL 11 Unmodified _IMHPVSGKHIL_ 0 0 0 nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9 nc|ENSG00000170502|Q9BW91-2|NUDT9 nc|ENSG00000170502|Q9BW91-2|NUDT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2376098632812 3 411.237509 1230.6907 0.071503 2.9405E-05 0.74937 0.00030817 0.82087 0.00033757 411.23775071317925 39.304 0.46493 39.316 39.063 39.528 0.011452 51 21 3 0 0 0 0.71341 1 20980 20980 1.2148 0.021489 1 3935300 23249 7996 15812 16107 27368 27368 0.08458015687642728 IMHVLCPGY 9 Unmodified _IMHVLCPGY_ 0 0 0 ENST00000341567.8_1_7:66420642-66420753:+|nuORF ENST00000341567.8_1_7:66420642-66420753:+|nuORF ENST00000341567.8_1_7:66420642-66420753:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.755126953125 2 516.753898 1031.49324 0.22527 0.00011641 0.595 0.00030747 0.82027 0.00042388 516.7542783509714 64.703 0.87449 64.703 64.345 65.219 0 94 41 3 0 0 0 0.22317 1 35980 35980 20.871 3.7847 1 3766100 23250 11969 15813 16108 27369 27369 -0.021243268466605514 IMIVTYTRI 9 Unmodified _IMIVTYTRI_ 0 0 0 ENSG00000184845|ENST00000393752|DRD1;ENSG00000169676|ENST00000304374|DRD5 ENSG00000184845|ENST00000393752|DRD1 ENSG00000184845|ENST00000393752|DRD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7943725585938 2 555.323002 1108.63145 1.2667 0.00070342 -0.73585 -0.00040863 0.53084 0.00029479 555.3228843038261 71.272 0.35962 71.311 71.068 71.427 0.039024 26 15 2 0 0 0 0.19298 1 39178 39178 13.508 4.9146 1 1308400 23251 7897 15814 16109 27370 27370 0.0814811967343303 IMKEKRKHRK 10 Unmodified _IMKEKRKHRK_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9474792480469 3 451.946841 1352.81869 0.60152 0.00027186 0.32451 0.00014666 0.92603 0.00041851 451.9469440473055 73.336 0.40484 73.38 73.207 73.612 0.043983 39 17 3 0 0 0 0.7191 1 40439 40439 0.77653 0.27058 1 1208600 23252 6571 15815 16110 27371 27371 0.1563957600149024 IMKHLTVMLF 10 Unmodified _IMKHLTVMLF_ 0 0 0 REV__nc|ENSG00000072071|O94910|ADGRL1 REV__nc|ENSG00000072071|O94910|ADGRL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5683898925781 3 411.567979 1231.68211 0.41472 0.00017069 0.51251 0.00021093 0.92723 0.00038162 411.5682441803775 49.069 0.28253 48.697 48.558 48.84 -0.37171 35 13 3 0 0 0 0.69377 1 26416 26416 1.7423 0.63252 1 4956500 + 23253 17506 15816 16111 27372 27372 0.07553325726780713 IMKKLKEIA 9 Unmodified _IMKKLKEIA_ 0 0 0 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5641479492188 3 358.563222 1072.66784 1.7774 0.00063732 0.16826 6.0331E-05 1.9457 0.00069765 358.5633472668663 30.516 0.25505 27.019 26.877 27.132 -3.497 19 12 2 0 0 0 0.044011 1 17220 17220 37.075 2.8529 1 18989000 23254 5023 15817 16112 27373 27373 0.13440996570147945 IMKKTSYIGSF 11 Unmodified _IMKKTSYIGSF_ 0 0 0 REV__ENSG00000124568|ENST00000244527|SLC17A1 REV__ENSG00000124568|ENST00000244527|SLC17A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.5654296875 3 425.565291 1273.67404 1.4201 0.00060436 2.5219 0.0010732 3.942 0.0016776 425.5661486731954 37.628 0.36259 33.259 33.11 33.473 -4.3689 48 21 3 0 0 0 0.42951 1 22070 22070 19.987 0.62496 1 19622000 + 23255 19455 15818 16113 27374 27374 0.04815470010998979 IMKLDIEQY 9 Unmodified _IMKLDIEQY_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2949829101562 2 576.8021 1151.58965 0.80999 0.0004672 -1.2157 -0.00070119 -0.40566 -0.00023399 576.8019944311158 74.386 0.98201 73.91 73.299 74.281 -0.47588 139 43 5 0 0 0 0.43463 1 40872 40872 10.824 0.75 1 38832000 23256 3091 15819 16114 27375 27375 0.019915191942573074 IMKLRMCMR 9 Unmodified _IMKLRMCMR_ 0 0 0 REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF REV__ENST00000227322.7_2_11:116649741-116650516:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5431213378906 3 394.542782 1180.60652 1.0454 0.00041247 -0.071486 -2.8204E-05 0.97394 0.00038426 394.54288486509176 34.614 0.35204 30.519 30.366 30.718 -4.0951 32 20 2 0 0 0 0.41742 1 19963 19963 7.609 0 1 12121000 + 23257 24793 15820 16115 27376 27376 0.023437020031906286 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(86)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3013305664062 2 545.302267 1088.58998 0.38343 0.00020908 -1.2499 -0.00068156 -0.86645 -0.00047248 545.30173954199 59.354 0.36347 59.354 59.169 59.532 0 55 15 5 0 0 0 0.0090524 2 33012 33012;33117 85.642 25.568 1 67334000 23258 5572 15821 16116 27377;27378 27377 1023 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(50)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3021240234375 2 545.302267 1088.58998 0.060072 3.2758E-05 -0.24054 -0.00013117 -0.18047 -9.8409E-05 545.3022339841938 59.853 0.42081 59.362 59.069 59.49 -0.49079 60 20 4 0 0 0 0.040683 1 32520 32520 49.554 16.769 1 59174000 23259 5572 15821 16116 27379 27379 1023 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(50)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3020629882812 2 545.302267 1088.58998 -0.11607 -6.3294E-05 -0.63453 -0.00034601 -0.7506 -0.00040931 545.3020440739571 60.228 0.32038 59.737 59.566 59.886 -0.49079 49 15 4 0 0 0 0.040683 1 32759 32759 49.554 18.286 1 51893000 23260 5572 15821 16116 27380 27380 1023 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(56)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3023681640625 2 545.302267 1088.58998 0.2978 0.00016239 0.62824 0.00034258 0.92605 0.00050497 545.3024811753846 59.824 0.20182 59.771 59.634 59.836 -0.053059 22 9 3 0 0 0 0.029718 1 32616 32616 55.503 17.327 1 5938000 23261 5572 15821 16116 27381 27381 1023 0.04922938914091901 IMLEALERV 9 Oxidation (M) _IM(Oxidation (M))LEALERV_ IM(1)LEALERV IM(48)LEALERV 0 0 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.298583984375 2 545.302267 1088.58998 0.14328 7.8132E-05 -1.3287 -0.00072455 -1.1854 -0.00064642 545.3010710500345 65.423 0.39261 59.247 59.148 59.541 -6.1757 41 22 2 0 0 0 0.044296 1 42431 42431 47.594 16.326 1 62242000 23262 5572 15821 16116 27382 27382 1023 0.04922938914091901 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3052978515625 2 537.30481 1072.59507 0.40844 0.00021946 -0.5486 -0.00029476 -0.14016 -7.5306E-05 537.3047279337485 67.526 0.57963 67.043 66.695 67.275 -0.48218 67 25 4 0 0 0 0.040733 2 36858 36858;36973 62.573 26.528 1 14279000 23263 5572 15821 16117 27383;27384 27383 0.06167242776700732 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS AL20221201_MKP_PDAC_01 4 537.3052978515625 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 76.168 1 69.992 69.492 70.492 -6.1757 0 0 0 0.061499 1 49828 49828 66.457 5.0992 1 23264 5572 15821 16117 27385 27385 0.06167242776700732 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS AL20221201_MKP_PDAC_01 4 537.3045043945312 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 76.945 1 70.77 70.27 71.27 -6.1757 0 0 0 0.061499 1 50322 50322 66.457 8.7347 1 23265 5572 15821 16117 27386 27386 0.06167242776700732 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS AL20221201_MKP_PDAC_01 4 537.3053588867188 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 77.214 1 71.039 70.539 71.539 -6.1757 0 0 0 0.022336 1 50502 50502 92.653 23.548 1 23266 5572 15821 16117 27387 27387 0.06167242776700732 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS AL20221201_MKP_PDAC_01 4 537.3052368164062 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 77.656 1 71.481 70.981 71.981 -6.1757 0 0 0 0.083147 1 50802 50802 51.63 9.5352 1 23267 5572 15821 16117 27388 27388 0.06167242776700732 IMLEALERV 9 Unmodified _IMLEALERV_ 0 0 0 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MSMS AL20221201_MKP_PDAC_01 4 537.3052978515625 2 537.30481 1072.59507 NaN NaN NaN NaN NaN NaN NaN 77.841 1 71.665 71.165 72.165 -6.1757 0 0 0 0.046779 1 50930 50930 72.968 10.395 1 23268 5572 15821 16117 27389 27389 0.06167242776700732 IMLGKNEY 8 Unmodified _IMLGKNEY_ 0 0 0 REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9 REV__nc|ENSG00000088727|Q9HAQ2-2|KIF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.25146484375 2 484.249503 966.484453 NaN NaN NaN NaN NaN NaN NaN 77.516 1 77.516 77.016 78.016 0 0 0 0 0.9249 1 43093 43093 15.768 1.1865 1 + 23269 17808 15822 16118 27390 27390 -0.00012977211520137644 IMLTKIPLE 9 Unmodified _IMLTKIPLE_ 0 0 0 ENSG00000213462|ENST00000394323|ERV3-1 ENSG00000213462|ENST00000394323|ERV3-1 ENSG00000213462|ENST00000394323|ERV3-1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3204345703125 2 529.319928 1056.6253 NaN NaN NaN NaN NaN NaN NaN 86.91 1 86.968 86.468 87.468 0.05822 0 0 0 0.065563 1 48295 48295 52.268 10.174 1 23270 10436 15823 16119 27391 27391 0.09925601441932486 IMLTSPNF 8 Unmodified _IMLTSPNF_ 0 0 0 ENSG00000144043|ENST00000272438|TEX261;ENST00000489894.5_1_2:71216836-71221917:-|nuORF ENSG00000144043|ENST00000272438|TEX261 ENSG00000144043|ENST00000272438|TEX261 MSMS AL20221201_MKP_PDAC_01 4 461.7410888671875 2 461.738771 921.462989 NaN NaN NaN NaN NaN NaN NaN 87.893 1 81.717 81.217 82.217 -6.1757 0 0 0 0.88073 1 57971 57971 19.439 3.6708 1 23271 5580 15824 16120 27392 27392 -0.0008836224022843453 IMLYKEVEL 9 Unmodified _IMLYKEVEL_ 0 0 0 nc|ENSG00000075651|Q13393-3|PLD1;nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1 nc|ENSG00000075651|Q13393-3|PLD1 nc|ENSG00000075651|Q13393-3|PLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.880859375 3 379.878987 1136.61513 1.2878 0.0004892 1.0547 0.00040068 2.3425 0.00088987 379.87939978856565 35.166 0.63338 31.071 30.7 31.333 -4.0951 107 37 4 0 0 0 0.54213 1 20192 20192 4.897 1.0207 1 100740000 23272 1165 15825 16121 27393 27393 0.052289937166960954 IMLYQDMTARD 11 Unmodified _IMLYQDMTARD_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7481689453125 3 452.881062 1355.62136 -0.14889 -6.7429E-05 -3.4837 -0.0015777 -3.6326 -0.0016451 452.8791346502353 32.181 0.20318 32.051 31.917 32.12 -0.12915 15 7 3 0 0 0 0.30303 1 16749 16749 5.4027 0.68679 1 1787100 23273 2063 15826 16122 27394 27394 -0.0422285611409734 IMNFIDIVAI 10 Unmodified _IMNFIDIVAI_ 0 0 0 ENSG00000111262|ENST00000382545|KCNA1 ENSG00000111262|ENST00000382545|KCNA1 ENSG00000111262|ENST00000382545|KCNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5499267578125 3 383.550982 1147.63112 -0.09412 -3.61E-05 -3.5087 -0.0013458 -3.6028 -0.0013819 383.5491519102747 30.143 0.30479 30.173 29.995 30.3 0.030106 25 12 3 0 0 0 0.42143 1 15748 15748 13.519 4.5424 1 1527900 23274 2774 15827 16123 27395 27395 0.06320699953585063 IMNIYVYI 8 Unmodified _IMNIYVYI_ 0 0 0 ENST00000318876.9_1_14:73437223-73437502:-|nuORF ENST00000318876.9_1_14:73437223-73437502:-|nuORF ENST00000318876.9_1_14:73437223-73437502:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7783813476562 2 514.777896 1027.54124 0.42605 0.00021932 -0.089759 -4.6206E-05 0.33629 0.00017311 514.7778243466788 85.92 0.39392 85.418 85.229 85.623 -0.5015 26 15 2 0 0 0 0.78849 1 47009 47009 9.3474 2.9933 1 930290 23275 11754 15828 16124 27396 27396 0.028570703449986468 IMNRRLCVIF 10 Unmodified _IMNRRLCVIF_ 0 0 0 ENSG00000155249|ENST00000641172|OR4K1 ENSG00000155249|ENST00000641172|OR4K1 ENSG00000155249|ENST00000641172|OR4K1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.240478515625 3 422.238744 1263.6944 NaN NaN NaN NaN NaN NaN NaN 23.191 1 23.209 22.709 23.709 0.01749 0 0 0 0.99091 1 11937 11937 0.69767 0 1 23276 6375 15829 16125 27397 27397 0.07310362189832631 IMNSQEGG 8 Unmodified _IMNSQEGG_ 0 0 0 ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF;nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL ENST00000556921.1_1_14:100551177-100572452:+|nuORF ENST00000556921.1_1_14:100551177-100572452:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.3649291992188 1 835.361444 834.354167 1.1128 0.00092956 -3.3852 -0.0028278 -2.2724 -0.0018983 835.3577694975547 71.426 0.23422 71.465 71.344 71.579 0.039032 11 10 2 0 0 0 0.80143 1 39343 39343 5.7604 0.52976 1 509830 23277 9811 15830 16126 27398 27398 -0.06963573210487084 IMNTLSQA 8 Unmodified _IMNTLSQA_ 0 0 0 REV__nc|ENSG00000148019|Q5JTW2|CEP78 REV__nc|ENSG00000148019|Q5JTW2|CEP78 MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4486694335938 1 877.444779 876.437503 0.72986 0.00064042 1.4665 0.0012868 2.1964 0.0019272 877.44567679618 101.6 0.13165 95.428 95.351 95.483 -6.1757 13 6 3 0 0 0 0.42423 1 68182 68182 42.095 2.1372 1 21318000 + 23278 20922 15831 16127 27399 27399 -0.005658367626551808 IMPEKFEFW 9 Unmodified _IMPEKFEFW_ 0 0 0 ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2 ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.30029296875 2 613.79936 1225.58417 1.1488 0.00070511 -1.7229 -0.0010575 -0.57412 -0.00035239 613.7980576174331 95.44 0.47658 89.265 89.004 89.481 -6.1757 71 27 3 0 0 0 0.06294 2 63139 63139;63275 41.84 19.103 1 25828000 23279 8341 15832 16128 27400;27401 27400 -0.019601595975473174 IMPEWLEAI 9 Unmodified _IMPEWLEAI_ 0 0 0 nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2869262695312 2 551.286085 1100.55762 NaN NaN NaN NaN NaN NaN NaN 16.44 1 16.44 15.94 16.94 0 0 0 0 0.83049 1 8015 8015 3.9444 0.3479 1 23280 4543 15833 16129 27402 27402 0.011361515111047993 IMPGEELHEVK 11 Unmodified _IMPGEELHEVK_ 0 0 0 REV__ENSG00000198015|ENST00000549982|MRPL42 REV__ENSG00000198015|ENST00000549982|MRPL42 MSMS AL20221201_MKP_PDAC_01 4 641.3297119140625 2 641.329013 1280.64347 NaN NaN NaN NaN NaN NaN NaN 86.296 1 80.121 79.621 80.621 -6.1757 0 0 0 0.48869 1 56891 56891 24.991 4.5764 1 + 23281 23980 15834 16130 27403 27403 0.014376916259379868 IMPNYAKNII 10 Unmodified _IMPNYAKNII_ 0 0 0 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8859558105469 3 392.886365 1175.63727 NaN NaN NaN NaN NaN NaN NaN 56.336 1 56.267 55.767 56.767 -0.068737 0 0 0 0.90096 1 30641 30641 4.1895 0 1 23282 3015 15835 16131 27404 27404 0.05647218185094971 IMPSSSHLF 9 Unmodified _IMPSSSHLF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7557983398438 2 509.754953 1017.49535 0.59985 0.00030578 -0.52591 -0.00026809 0.073941 3.7692E-05 509.75480303907904 50.565 0.28645 50.151 50.032 50.318 -0.41351 23 13 2 0 0 0 0.12841 1 27257 27257 30.225 7.0764 1 1645900 23283 3021 15836 16132 27405 27405 -0.01269574837226628 IMPSSSHLF 9 Unmodified _IMPSSSHLF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.7550048828125 2 509.754953 1017.49535 1.6671 0.00084979 -0.90478 -0.00046122 0.76228 0.00038858 509.7544010659662 50.229 0.40354 50.18 49.927 50.331 -0.048824 31 19 2 0 0 0 0.052168 1 27184 27184 44.407 29.825 1 4933200 23284 3021 15836 16132 27406 27406 -0.01269574837226628 IMPSSSHLF 9 Unmodified _IMPSSSHLF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2801208496094 2 509.754953 1017.49535 0.1583 8.0696E-05 0.30549 0.00015573 0.46379 0.00023642 509.75503686557863 56.233 0.59266 50.256 49.95 50.542 -5.9769 64 34 2 0 0 0 0.19298 1 35713 35713 13.508 7.1538 1 241360000 23285 3021 15836 16132 27407 27407 -0.01269574837226628 IMPSSSHLF 9 Oxidation (M) _IM(Oxidation (M))PSSSHLF_ IM(1)PSSSHLF IM(44)PSSSHLF 0 0 1 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7529907226562 2 517.75241 1033.49027 0.61142 0.00031657 2.1789 0.0011281 2.7903 0.0014447 517.7523838631247 42.744 0.38009 42.735 42.539 42.919 -0.0088196 46 17 4 0 0 0 0.052168 1 22853 22853 44.407 24.968 1 29849000 23286 3021 15836 16133 27408 27408 522 -0.025138786998240903 IMPSSSHLF 9 Oxidation (M) _IM(Oxidation (M))PSSSHLF_ 0 0 1 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.75241 1033.49027 0.95325 0.00049355 2.1253 0.0011004 3.0785 0.0015939 518.2566507298528 42.861 0.40222 42.861 42.663 43.065 0 0.13931 0.0025789 NaN 44.407 52 20 4 NaN NaN NaN NaN 0 NaN NaN 0 8208400 23287 3021 15836 16133 522 -0.025138786998240903 IMPTIFNLI 9 Oxidation (M) _IM(Oxidation (M))PTIFNLI_ IM(1)PTIFNLI IM(60)PTIFNLI 0 0 1 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.303955078125 2 539.304278 1076.594 0.64026 0.00034529 0.081752 4.4089E-05 0.72201 0.00038938 539.3046454849663 100.74 0.13954 100.7 100.6 100.74 -0.04216 9 4 3 0 0 0 0.023164 1 55970 55970 60.39 9.5345 1 6958700 23288 1119 15837 16134 27409 27409 186 0.05877028407826401 IMPTPAPPM 9 Oxidation (M) _IM(Oxidation (M))PTPAPPM_ IM(1)PTPAPPM IM(45)PTPAPPM(-45) 0 0 1 nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2;ENST00000481994.1_1_7:70229918-70239316:+|nuORF nc|ENSG00000158321|Q8WXX7-2|AUTS2 nc|ENSG00000158321|Q8WXX7-2|AUTS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.4827270507812 1 970.473637 969.46636 0.83958 0.00081479 3.0088 0.0029199 3.8484 0.0037347 970.4771513337231 61.4 0.58878 55.252 55.015 55.604 -6.1478 43 29 2 0 0 0 0.045537 1 39658 39658 46.921 8.7453 2 54208000 23289 6580 15838 16135 27410 27410 1150 -0.019594354578657658 IMQATDVMRK 10 Unmodified _IMQATDVMRK_ 0 0 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000520235.1_1_8:69103966-69132518:+|nuORF ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8140258789062 2 596.812476 1191.6104 1.6408 0.00097927 1.3435 0.00080184 2.9844 0.0017811 596.8128422117039 93.208 0.5066 93.231 92.897 93.404 0.022987 49 19 3 0 0 0 0.67459 1 51788 51788 5.7319 0 1 2195900 23290 677 15839 16136 27411 27411 0.022257863022332458 IMQEEWSK 8 Oxidation (M) _IM(Oxidation (M))QEEWSK_ IM(1)QEEWSK IM(86)QEEWSK 0 0 1 REV__nc|ENSG00000108064|Q00059-2|TFAM REV__nc|ENSG00000108064|Q00059-2|TFAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7460327148438 2 533.747324 1065.4801 NaN NaN NaN NaN NaN NaN NaN 56.441 1 55.955 55.455 56.455 -0.48554 0 0 0 0.18561 1 30648 30648 85.642 26.963 1 + 23291 18594 15840 16137 27412 27412 1834 -0.05002486425087227 IMRMMCWGF 9 Unmodified _IMRMMCWGF_ 0 0 0 ENST00000566882.5_1_15:43483650-43483737:+|nuORF ENST00000566882.5_1_15:43483650-43483737:+|nuORF ENST00000566882.5_1_15:43483650-43483737:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1725769042969 3 392.172466 1173.49557 0.065558 2.571E-05 -1.0863 -0.00042602 -1.0208 -0.00040031 392.1722819721129 46.789 0.30956 46.789 46.631 46.941 0 59 14 5 0 0 0 0.47846 1 25547 25547 8.7454 3.3427 1 66261000 23292 15427 15841 16138 27413 27413 -0.08423937704878881 IMRSMIVTF 9 Unmodified _IMRSMIVTF_ 0 0 0 REV__ENSG00000189339|ENST00000617444|SLC35E2B;REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF REV__ENSG00000189339|ENST00000617444|SLC35E2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5322570800781 3 366.533046 1096.57731 NaN NaN NaN NaN NaN NaN NaN 21.346 1 21.346 20.846 21.846 0 0 0 0 0.84564 1 10794 10794 1.0715 0 1 + 23293 23778;27691 15842 16139 27414 27414 0.03288204250225135 IMRWFSSF 8 Unmodified _IMRWFSSF_ 0 0 0 ENST00000461039.1_1_1:64021028-64034235:+|nuORF ENST00000461039.1_1_1:64021028-64034235:+|nuORF ENST00000461039.1_1_1:64021028-64034235:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.28857421875 2 537.265487 1072.51642 1.1351 0.00060984 -2.4749 -0.0013297 -1.3398 -0.00071981 537.7651805747774 86.667 0.22636 80.492 80.379 80.605 -6.1757 12 11 2 0 0 0 8.7369 1 57132 57132 15.768 1.1865 1 3808500 23294 13652 15843 16140 27415 27415 -0.016935647377067653 IMRWFSSF 8 Unmodified _IMRWFSSF_ 0 0 0 ENST00000461039.1_1_1:64021028-64034235:+|nuORF ENST00000461039.1_1_1:64021028-64034235:+|nuORF ENST00000461039.1_1_1:64021028-64034235:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2885131835938 2 537.265487 1072.51642 1.1227 0.00060321 -0.77512 -0.00041644 0.34762 0.00018677 537.766654394268 86.454 0.13156 80.279 80.247 80.379 -6.1757 8 6 2 0 0 0 8.7369 1 57010 57010 15.768 1.1865 1 7268200 23295 13652 15843 16140 27416 27416 -0.016935647377067653 IMRWWEPEQL 10 Unmodified _IMRWWEPEQL_ 0 0 0 ENST00000228928.11_1_12:113409775-113410174:+|nuORF ENST00000228928.11_1_12:113409775-113410174:+|nuORF ENST00000228928.11_1_12:113409775-113410174:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.3491821289062 2 694.344997 1386.67544 0.83643 0.00058077 3.998 0.002776 4.8344 0.0033568 694.3479334564194 95.538 0.16397 89.362 89.282 89.446 -6.1757 13 9 2 0 0 0 0.34249 1 63287 63287 24.991 2.3329 1 9322500 23296 11058 15844 16141 27417 27417 -0.0024289590023727214 IMRYCASHL 9 Unmodified _IMRYCASHL_ 0 0 0 ENST00000265753.12_1_7:73610429-73610678:+|nuORF ENST00000265753.12_1_7:73610429-73610678:+|nuORF ENST00000265753.12_1_7:73610429-73610678:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1810607910156 3 365.180895 1092.52086 NaN NaN NaN NaN NaN NaN NaN 20.966 1 20.977 20.477 21.477 0.010553 0 0 0 0.76439 1 10711 10711 4.5289 0 1 23297 11337 15845 16142 27418 27418 -0.02170423586449033 IMSCILQNYN 10 Unmodified _IMSCILQNYN_ 0 0 0 nc|ENSG00000197415|Q14D04-4|VEPH1;nc|ENSG00000197415|Q14D04-3|VEPH1;nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1 nc|ENSG00000197415|Q14D04-4|VEPH1 nc|ENSG00000197415|Q14D04-4|VEPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.782958984375 2 599.783384 1197.55222 -0.35955 -0.00021565 -0.36729 -0.00022029 -0.72684 -0.00043595 599.7830588015361 31.549 0.14923 31.579 31.499 31.648 0.030106 11 6 2 0 0 0 0.66229 1 16560 16560 4.897 0 1 1758100 23298 9952 15846 16143 27419 27419 -0.03865895343005832 IMSGKGAG 8 Unmodified _IMSGKGAG_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 720.3697509765625 1 720.370886 719.36361 0.83196 0.00059932 2.8441 0.0020488 3.676 0.0026481 720.3718743565092 99.362 0.13045 93.187 93.113 93.243 -6.1757 12 8 2 0 0 0 0.67481 1 66152 66152 19.439 4.8573 1 40821000 + 23299 20468 15847 16144 27420 27420 -0.007297601343111637 IMSKLWLG 8 Unmodified _IMSKLWLG_ 0 0 0 nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5 nc|ENSG00000099998|P36269-2|GGT5 nc|ENSG00000099998|P36269-2|GGT5 MSMS AL20221201_MKP_PDAC_01 4 474.2747802734375 2 474.272781 946.531009 NaN NaN NaN NaN NaN NaN NaN 27.129 1 24.093 23.593 24.593 -3.0365 0 0 0 0.94061 1 15009 15009 12.532 2.3482 1 23300 1735 15848 16145 27421 27421 0.05560507410450555 IMSPACVV 8 Unmodified _IMSPACVV_ 0 0 0 ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 MSMS AL20221201_MKP_PDAC_01 4 410.2080078125 2 410.208792 818.403032 NaN NaN NaN NaN NaN NaN NaN 15.664 1 13.137 12.637 13.637 -2.5273 0 0 0 0.9706 1 8058 8058 6.3541 0 1 23301 4719 15849 16146 27422 27422 -0.013433761751116435 IMSRQLQY 8 Unmodified _IMSRQLQY_ 0 0 0 nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12 nc|ENSG00000151388|P58397-3|ADAMTS12 nc|ENSG00000151388|P58397-3|ADAMTS12 MSMS AL20221201_MKP_PDAC_01 4 519.7743530273438 2 519.773677 1037.5328 NaN NaN NaN NaN NaN NaN NaN 41.959 1 37.274 36.774 37.774 -4.6846 0 0 0 0.69365 1 25277 25277 28.487 8.0332 1 23302 6110 15850 16147 27423 27423 0.015535164284074199 IMSSLEDEGF 10 Unmodified _IMSSLEDEGF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2516479492188 2 564.249897 1126.48524 0.68615 0.00038716 1.4293 0.00080651 2.1155 0.0011937 564.2511375978438 83.612 0.37836 83.115 82.89 83.268 -0.49751 71 15 7 0 0 0 0.69064 1 45830 45830 3.9444 1.6417 1 3361500 23303 1295 15851 16148 27424 27424 -0.07294227353122551 IMSWSPKEKTY 11 Unmodified _IMSWSPKEKTY_ 0 0 0 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.344482421875 2 685.344663 1368.67477 0.91104 0.00062437 -0.4692 -0.00032156 0.44184 0.00030281 685.3444835508692 52.609 0.51714 52.55 52.229 52.746 -0.058914 79 25 4 0 0 0 0.6249 3 28378 28378;28479;28582 10.074 0 1 13527000 23304 1180 15852 16149 27425;27426;27427 27425 0.005182646600587759 IMTEGERF 8 Unmodified _IMTEGERF_ 0 0 0 REV__ENSG00000175467|ENST00000312397|SART1 REV__ENSG00000175467|ENST00000312397|SART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7359313964844 2 491.73676 981.458967 0.5261 0.0002587 -1.4089 -0.00069281 -0.88281 -0.00043411 491.7359137330715 78.962 0.99966 78.476 78.012 79.012 -0.48596 102 41 3 0 0 0 0.78849 1 43510 43510 9.3474 1.4373 1 1918100 + 23305 22872 15853 16150 27428 27428 -0.032504517339248196 IMVGIFSTHYF 11 Unmodified _IMVGIFSTHYF_ 0 0 0 nc|ENSG00000081985|Q99665-2|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2 nc|ENSG00000081985|Q99665-2|IL12RB2 nc|ENSG00000081985|Q99665-2|IL12RB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8385009765625 2 657.831191 1313.64783 -0.072773 -4.7872E-05 -0.79583 -0.00052352 -0.8686 -0.0005714 657.8307602384831 84.779 0.59062 78.604 78.333 78.924 -6.1757 57 34 2 0 0 0 0.27261 1 55662 55662 36.127 12.106 1 16950000 23306 1336 15854 16151 27429 27429 0.0035520083954452275 IMVTKKTHV 9 Unmodified _IMVTKKTHV_ 0 0 0 REV__ENST00000483395.1_1_2:220290368-220290709:+|nuORF REV__ENST00000483395.1_1_2:220290368-220290709:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8791198730469 3 352.879322 1055.61614 -0.035144 -1.2402E-05 -0.5773 -0.00020372 -0.61244 -0.00021612 352.8789432961905 41.044 0.86751 41.042 40.773 41.64 -0.0017929 66 41 2 0 0 0 0.56862 1 21931 21931 1.9064 0.31409 1 5406600 + 23307 22839 15855 16152 27430 27430 0.09055252876237319 IMVTKKTHV 9 Unmodified _IMVTKKTHV_ 0 0 0 REV__ENST00000483395.1_1_2:220290368-220290709:+|nuORF REV__ENST00000483395.1_1_2:220290368-220290709:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8788757324219 3 352.879322 1055.61614 0.038297 1.3514E-05 -1.3232 -0.00046693 -1.2849 -0.00045341 352.8787821948365 42.195 0.32012 42.186 42.101 42.421 -0.0088196 20 14 2 0 0 0 0.56862 1 22599 22599 1.9064 1.2087 1 5717200 + 23308 22839 15855 16152 27431 27431 0.09055252876237319 INAGASRK 8 Unmodified _INAGASRK_ 0 0 0 ENSG00000162745|ENST00000294794|OLFML2B ENSG00000162745|ENST00000294794|OLFML2B ENSG00000162745|ENST00000294794|OLFML2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 816.4738159179688 1 816.468626 815.46135 1.3694 0.0011181 0.045627 3.7253E-05 1.415 0.0011553 816.4686791427217 102.52 0.077644 96.34 96.296 96.373 -6.1757 19 10 3 0 0 0 0.80447 1 68774 68774 3.9444 1.8846 1 8851300 23309 6906 15856 16153 27432 27432 0.04623764786049378 INAKEKQTF 9 Unmodified _INAKEKQTF_ 0 0 0 REV__nc|ENSG00000167766|P51522-2|ZNF83 REV__nc|ENSG00000167766|P51522-2|ZNF83 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2026062011719 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 20.837 1 20.848 20.348 21.348 0.010553 0 0 0 0.32622 1 10641 10641 23.79 7.5152 1 + 23310 22252 15857 16154 27433 27433 0.046171279889904326 INAKSRAEAAL 11 Unmodified _INAKSRAEAAL_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000493660.5_1_17:38792069-38802054:-|nuORF;ENST00000469334.5_1_17:38788437-38802054:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MSMS AL20221201_MKP_PDAC_01 4 572.3287353515625 2 572.327662 1142.64077 NaN NaN NaN NaN NaN NaN NaN 24.775 1 21.892 21.392 22.392 -2.8831 0 0 0 0.22611 1 13510 13510 37.771 16.181 1 23311 94 15858 16155 27434 27434 0.07515604283344146 INCVTREPL 9 Carbamidomethyl (C) _INC(Carbamidomethyl (C))VTREPL_ INC(1)VTREPL INC(58)VTREPL 0 1 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2880249023438 2 551.289691 1100.56483 0.38938 0.00021466 1.1571 0.00063792 1.5465 0.00085259 551.290860857168 51.966 0.54833 46.231 45.967 46.515 -5.7345 102 36 4 0 0 0 0.025842 1 32935 32935 57.722 9.99 1 311260000 23312 10112 15859 16156 27435 27435 916 0.018568841115438772 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.510498046875 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 74.945 1 68.769 68.269 69.269 -6.1757 0 0 0 0.7818 1 49002 49002 4.1895 0 1 + 23313 17358 15860 16157 27436 27436 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.180419921875 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 75.134 1 68.959 68.459 69.459 -6.1757 0 0 0 0.7818 1 49130 49130 4.1895 0 1 + 23314 17358 15860 16157 27437 27437 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1803283691406 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 75.312 1 69.136 68.636 69.636 -6.1757 0 0 0 0.7818 1 49252 49252 7.1017 0.47135 1 + 23315 17358 15860 16157 27438 27438 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1800537109375 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 75.518 1 69.343 68.843 69.843 -6.1757 0 0 0 0.7818 1 49390 49390 4.1895 0 1 + 23316 17358 15860 16157 27439 27439 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1802368164062 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 75.765 1 69.589 69.089 70.089 -6.1757 0 0 0 0.7818 1 49554 49554 4.1895 0 1 + 23317 17358 15860 16157 27440 27440 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1803283691406 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 76.203 1 70.027 69.527 70.527 -6.1757 0 0 0 0.7818 1 49849 49849 4.1895 0 1 + 23318 17358 15860 16157 27441 27441 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1802978515625 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 76.492 1 70.317 69.817 70.817 -6.1757 0 0 0 0.83329 1 50035 50035 2.086 0.43339 1 + 23319 17358 15860 16157 27442 27442 -0.00642189808513649 INDKCLAQF 9 Unmodified _INDKCLAQF_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MSMS AL20221201_MKP_PDAC_01 4 351.1802368164062 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 76.961 1 70.785 70.285 71.285 -6.1757 0 0 0 0.7818 1 50331 50331 4.1895 0 1 + 23320 17358 15860 16157 27443 27443 -0.00642189808513649 INEMKKFWYP 10 Unmodified _INEMKKFWYP_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.5660705566406 3 452.565403 1354.67438 NaN NaN NaN NaN NaN NaN NaN 14.085 1 14.054 13.554 14.554 -0.030868 0 0 0 1.0047 1 6831 6831 0.15932 0 1 + 23321 18186 15861 16158 27444 27444 0.011228897308910746 INEQVRAVF 9 Unmodified _INEQVRAVF_ 0 0 0 REV__ENST00000464761.1_1_2:204276063-204301494:+|nuORF REV__ENST00000464761.1_1_2:204276063-204301494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2981567382812 2 538.298373 1074.58219 NaN NaN NaN NaN NaN NaN NaN 70.45 1 69.973 69.473 70.473 -0.47735 0 0 0 0.36855 1 38532 38532 29.082 8.628 1 + 23322 20335 15862 16159 27445 27445 0.047885477088584594 INESPEDH 8 Unmodified _INESPEDH_ 0 0 0 nc|ENSG00000151239|Q12792-3|TWF1 nc|ENSG00000151239|Q12792-3|TWF1 nc|ENSG00000151239|Q12792-3|TWF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 941.4053955078125 1 940.400666 939.393389 0.64888 0.00061021 2.927 0.0027525 3.5758 0.0033627 940.4041117297818 74.468 0.19994 73.992 73.887 74.087 -0.47588 11 8 2 0 0 0 0.80143 1 40757 40757 5.7604 1.4312 1 636550 23323 16272 15863 16160 27446 27446 -0.07873149655279121 INEYKGAVI 9 Unmodified _INEYKGAVI_ 0 0 0 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7820129394531 2 503.782025 1005.5495 0.74625 0.00037594 0.25084 0.00012637 0.99709 0.00050231 503.78204479014335 42.237 0.57296 37.553 37.234 37.807 -4.6846 98 36 4 0 0 0 0.094149 1 25662 25662 34.402 3.7652 1 106820000 23324 10302 15864 16161 27447 27447 0.04694340586001999 INFHSVVEKY 10 Unmodified _INFHSVVEKY_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5512084960938 3 412.552151 1234.63462 -0.54424 -0.00022453 -1.9696 -0.00081255 -2.5138 -0.0010371 412.5513599000904 19.494 0.12979 19.494 19.403 19.533 0 33 14 3 0 0 0 0.5933 1 9744 9744 7.0371 1.9896 1 1262800 23325 7103 15865 16162 27448 27448 0.026690860518101545 INFKYCQLM 9 Unmodified _INFKYCQLM_ 0 0 0 REV__ENST00000325110.10_1_5:43290181-43290289:-|nuORF REV__ENST00000325110.10_1_5:43290181-43290289:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8294677734375 2 580.285563 1158.55657 1.1693 0.00067853 2.9597 0.0017175 4.129 0.002396 580.2871178993393 90.914 0.24426 90.95 90.767 91.012 0.036499 11 8 2 0 0 0 0.18521 1 50554 50554 16.942 0 1 3647300 + 23326 25546 15866 16163 27449 27449 -0.016363861294394155 INFNFNPYP 9 Unmodified _INFNFNPYP_ 0 0 0 REV__ENSG00000149313|ENST00000278618|AASDHPPT REV__ENSG00000149313|ENST00000278618|AASDHPPT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8499755859375 3 375.850308 1124.5291 NaN NaN NaN NaN NaN NaN NaN 15.337 1 15.337 14.837 15.837 0 0 0 0 0.84369 1 7379 7379 1.1933 0.12188 1 + 23327 20994 15867 16164 27450 27450 -0.028188300738065664 INGPDLYAI 9 Unmodified _INGPDLYAI_ 0 0 0 REV__nc|ENSG00000110911|P49281-5|SLC11A2 REV__nc|ENSG00000110911|P49281-5|SLC11A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.5084838867188 1 975.514573 974.507297 -0.50385 -0.00049151 0.28145 0.00027456 -0.2224 -0.00021695 975.5166197707698 77.196 0.16238 76.713 76.58 76.743 -0.4826 10 6 2 0 0 0 0.56862 1 42237 42237 3.2813 0.39209 1 352770 + 23328 18728 15868 16165 27451 27451 0.01902365177613774 INHFAFFSL 9 Unmodified _INHFAFFSL_ 0 0 0 REV__ENST00000261716.7_1_17:27876830-27877082:+|nuORF REV__ENST00000261716.7_1_17:27876830-27877082:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8575744628906 3 365.858915 1094.55492 -0.41521 -0.00015191 -0.18573 -6.7951E-05 -0.60094 -0.00021986 365.8592238203457 20.811 0.076571 20.811 20.744 20.82 0 7 5 2 0 0 0 0.55144 1 10486 10486 2.4985 0.65425 1 539610 + 23329 25002 15869 16166 27452 27452 0.011420641684708244 INHFLSVSVY 10 Unmodified _INHFLSVSVY_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000531957.1_1_11:108164147-108165800:+|nuORF;ENST00000531525.2_1_11:108160471-108165800:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.81494140625 2 589.813856 1177.61316 0.90063 0.0005312 0.73967 0.00043627 1.6403 0.00096747 589.8142464772538 47.305 0.49964 42.224 41.933 42.432 -5.0805 56 34 2 0 0 0 0.32493 1 29371 29371 24.021 1.2843 1 52942000 23330 6002 15870 16167 27453 27453 0.03145701023095171 INHRSHTC 8 Unmodified _INHRSHTC_ 0 0 0 REV__ENST00000493740.1_1_3:183857994-183858625:+|nuORF REV__ENST00000493740.1_1_3:183857994-183858625:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2303771972656 2 484.229968 966.445382 0.30883 0.00014954 0.60065 0.00029085 0.90948 0.0004404 484.2304161435446 45.793 0.1642 45.765 45.661 45.826 -0.028011 16 7 3 0 0 0 0.28079 1 24593 24593 57.471 0.93007 1 4587400 + 23331 20756 15871 16168 27454 27454 -0.03918264722506137 INHYEFVGPF 10 Unmodified _INHYEFVGPF_ 0 0 0 REV__nc|ENSG00000141298|Q76I76-4|SSH2 REV__nc|ENSG00000141298|Q76I76-4|SSH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 611.8416137695312 2 611.798206 1221.58186 0.70524 0.00043147 0.68761 0.00042068 1.3929 0.00085214 611.7987554781223 93.704 0.54381 87.529 87.318 87.862 -6.1757 46 31 2 0 0 0 0.22811 1 61885 61885 6.2058 0 1 17642000 + 23332 20525 15872 16169 27455 27455 -0.020068720109975402 INIFRHLNLF 10 Unmodified _INIFRHLNLF_ 0 0 0 ENST00000371335.4_1_X:119571049-119571103:-|nuORF ENST00000371335.4_1_X:119571049-119571103:-|nuORF ENST00000371335.4_1_X:119571049-119571103:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.374267578125 2 643.87204 1285.72953 0.62694 0.00040367 0.4744 0.00030545 1.1013 0.00070912 644.3739512570829 75.916 1.468 69.74 68.963 70.431 -6.1757 254 80 4 0 0 0 0.57893 1 49954 49954 12.241 1.4167 1 72031000 23333 12354 15873 16170 27456 27456 0.09809064313640192 INITEHELV 9 Unmodified _INITEHELV_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2927856445312 2 534.290214 1066.56587 1.1653 0.00062262 0.4258 0.0002275 1.5911 0.00085012 534.2904654450529 53.71 0.65197 47.905 47.711 48.363 -5.8042 92 39 3 0 0 0 0.25681 1 34157 34157 19.257 2.1441 1 118200000 23334 1712 15874 16171 27457 27457 0.03525421752101465 INIWEEMDK 9 Unmodified _INIWEEMDK_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MSMS AL20221201_MKP_PDAC_01 4 393.1906433105469 3 393.190113 1176.54851 NaN NaN NaN NaN NaN NaN NaN 90.885 1 84.71 84.21 85.21 -6.1757 0 0 0 0.82739 1 60060 60060 2.4985 0.59211 1 + 23335 24644 15875 16172 27458 27458 -0.032702418452117854 INKCAMCQSIF 11 Unmodified _INKCAMCQSIF_ 0 0 0 nc|ENSG00000133710|Q9NQ38-2|SPINK5;ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-3|SPINK5 nc|ENSG00000133710|Q9NQ38-2|SPINK5 nc|ENSG00000133710|Q9NQ38-2|SPINK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.2943115234375 2 629.293062 1256.57157 2.1684 0.0013646 -1.2113 -0.00076227 0.95712 0.00060231 629.2922383333031 94.946 0.5801 94.961 94.695 95.275 0.014252 55 21 3 0 0 0 0.56638 1 52869 52869 13.042 0.51092 1 5001500 23336 4531 15876 16173 27459 27459 -0.046452623237655644 INKIQQIWLL 10 Unmodified _INKIQQIWLL_ 0 0 0 REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B REV__nc|ENSG00000151148|Q7Z3V4-3|UBE3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8941040039062 2 634.889898 1267.76524 3.096 0.0019656 0.12286 7.8005E-05 3.2188 0.0020436 635.3902464606584 99.687 0.24155 99.651 99.529 99.771 -0.036301 18 8 3 0 0 0 0.72247 1 55363 55363 0.40072 0 1 25937000 + 23337 21052 15877 16174 27460 27460 0.14207101770671215 INLFFFFVF 9 Unmodified _INLFFFFVF_ 0 0 0 ENST00000233813.4_1_2:217540303-217540537:-|nuORF ENST00000233813.4_1_2:217540303-217540537:-|nuORF ENST00000233813.4_1_2:217540303-217540537:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3218994140625 2 597.323328 1192.6321 1.0192 0.0006088 -3.9152 -0.0023386 -2.896 -0.0017298 597.3200978652491 71.119 0.52971 71.154 70.894 71.424 0.035515 31 15 3 0 0 0 0.30562 1 39167 39167 16.942 2.104 1 2754100 23338 11079 15878 16175 27461 27461 0.043492823848055195 INLIPAHKN 9 Unmodified _INLIPAHKN_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3049621582031 2 510.303458 1018.59236 1.3874 0.00070802 0.065794 3.3575E-05 1.4532 0.00074159 510.3035479821995 103.48 0.063347 97.302 97.265 97.328 -6.1757 24 13 2 0 0 0 0.59218 1 69377 69377 1.8442 1.0506 1 8707400 23339 3605 15879 16176 27462 27462 0.08381155434085485 INLIRGQVI 9 Unmodified _INLIRGQVI_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3269653320312 2 513.326934 1024.63931 0.74287 0.00038133 -0.12943 -6.6438E-05 0.61344 0.0003149 513.326866203612 39.108 0.39587 34.657 34.445 34.84 -4.4509 46 25 2 0 0 0 0.070838 1 23203 23203 39.957 0.0076237 1 43094000 23340 5541 15880 16177 27463 27463 0.12798014985241934 INLKMMWY 8 Unmodified _INLKMMWY_ 0 0 0 REV__ENST00000342992.10_3_2:179486605-179487428:-|nuORF REV__ENST00000342992.10_3_2:179486605-179487428:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.855224609375 3 366.854008 1097.54019 NaN NaN NaN NaN NaN NaN NaN 18.948 1 16.327 15.827 16.827 -2.6215 0 0 0 0.96606 1 10008 10008 7.2892 3.7022 1 + 23341 25729 15881 16178 27464 27464 -0.0046746729553888144 INLLEHLGF 9 Unmodified _INLLEHLGF_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2984619140625 2 528.297842 1054.58113 0.30482 0.00016104 0.69586 0.00036762 1.0007 0.00052866 528.2980720982027 60.656 0.21219 60.613 60.533 60.745 -0.04351 25 10 3 0 0 0 0.35911 1 33084 33084 14.838 0 1 11688000 + 23342 20626 15882 16179 27465 27465 0.05602333339948018 INLTDLLYL 9 Unmodified _INLTDLLYL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.265380859375 2 539.313158 1076.61176 -0.065159 -3.5141E-05 -1.0446 -0.00056335 -1.1097 -0.00059849 539.3129707067462 69.229 0.22252 68.748 68.627 68.849 -0.48071 12 9 2 0 0 0 0.21473 1 37873 37873 4.3292 1.44 1 578440 23343 8706 15883 16180 27466 27466 0.07652066934338109 INMHVDDPRV 10 Unmodified _INMHVDDPRV_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1 REV__nc|ENSG00000187627|P0DJD0|RGPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2009582519531 3 399.201124 1194.58154 -0.51691 -0.00020635 -0.045133 -1.8017E-05 -0.56204 -0.00022437 399.2011855542492 19.655 0.27416 19.655 19.541 19.815 0 136 42 4 0 0 0 0.71413 1 9908 9908 0.56317 0.1965 1 14768000 + 23344 23491 15884 16181 27467 27467 -0.007966150025367824 INMTVKFG 8 Unmodified _INMTVKFG_ 0 0 0 REV__ACAD9|p.A296T|1|0.18|ENSG00000177646|chr3:128902556-128902556|G/A|missense_variant REV__ACAD9|p.A296T|1|0.18|ENSG00000177646|chr3:128902556-128902556|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 455.24658203125 2 455.246763 908.478974 NaN NaN NaN NaN NaN NaN NaN 36.571 1 32.287 31.787 32.787 -4.2835 0 0 0 0.90769 1 21368 21368 18.135 3.2967 1 + 23345 16698 15885 16182 27468 27468 0.021073439966926344 INNPESVYYW 10 Unmodified _INNPESVYYW_ 0 0 0 nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000595844.5_1_19:12787852-12790977:-|nuORF;nc|ENSG00000095059|P49366-2|DHPS nc|ENSG00000095059|P49366-3|DHPS nc|ENSG00000095059|P49366-3|DHPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.798583984375 2 642.798403 1283.58225 0.86831 0.00055815 -0.81387 -0.00052315 0.054438 3.4993E-05 642.797843016341 58.104 0.25989 58.038 57.89 58.15 -0.066036 26 12 3 0 0 0 0.66569 1 31614 31614 6.7232 0 1 7409800 23346 1643 15886 16183 27469 27469 -0.048194970818030924 INPHRNNY 8 Unmodified _INPHRNNY_ 0 0 0 REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2572631835938 2 514.25704 1026.49953 0.22346 0.00011491 0.052045 2.6764E-05 0.2755 0.00014168 514.2571499777818 76.059 0.35381 76.059 75.894 76.248 0 26 15 2 0 0 0 0.6895 1 42369 42369 18.135 6.4947 1 2534900 + 23347 22409 15887 16184 27470 27470 -0.012663492992942338 INPQLAVLL 9 Unmodified _INPQLAVLL_ 0 0 0 REV__nc|ENSG00000145817|Q969M3-3|YIPF5 REV__nc|ENSG00000145817|Q969M3-3|YIPF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.811767578125 2 490.810585 979.606617 NaN NaN NaN NaN NaN NaN NaN 92.84 1 92.383 91.883 92.883 -0.4574 0 0 0 0.36554 1 50739 50739 21.747 1.293 1 + 23348 29681 15888 16185 27471 27471 0.11599807862387479 INQADTTHPL 10 Unmodified _INQADTTHPL_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2835083007812 2 555.28292 1108.55129 NaN NaN NaN NaN NaN NaN NaN 63.739 1 63.739 63.239 64.239 0 0 0 0 0.94014 1 35551 35551 6.2058 0.44535 1 23349 4191 15889 16186 27472 27472 0.001353496039428137 INQEEFKGF 9 Unmodified _INQEEFKGF_ 0 0 0 ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE ENSG00000171132|ENST00000306156|PRKCE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2756958007812 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 73.056 1 73.056 72.556 73.556 0 0 0 0 0.82396 1 40672 40672 4.756 0 1 23350 8067 15890 16187 27473 27473 -0.01627151281991246 INQIVPLS 8 Unmodified _INQIVPLS_ 0 0 0 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2482604980469 2 442.26601 882.517468 1.5698 0.00069426 -0.72932 -0.00032255 0.84046 0.00037171 442.265770156917 58.667 0.31319 52.593 52.421 52.734 -6.0745 21 17 2 0 0 0 8.7369 1 37623 37623 36.044 1.9418 1 7104200 + 23351 21723 15891 16188 27474 27474 0.07150972902854846 INQRVLEFKP 10 Unmodified _INQRVLEFKP_ 0 0 0 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3621826171875 2 622.361505 1242.70846 0.1559 9.7024E-05 -0.35745 -0.00022246 -0.20155 -0.00012544 622.3612488237809 37.645 0.34135 37.662 37.498 37.839 0.01704 49 16 4 0 0 0 0.41822 1 19941 19941 30.637 6.8468 1 28498000 + 23352 21453 15892 16189 27475 27475 0.09681054214138385 INQRVLEFKP 10 Unmodified _INQRVLEFKP_ 0 0 0 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 REV__nc|ENSG00000158966|Q5VU97-2|CACHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2432250976562 3 415.243429 1242.70846 -0.20023 -8.3143E-05 -0.2185 -9.0732E-05 -0.41873 -0.00017388 415.2433130221247 37.646 1.1282 37.664 37.416 38.544 0.01704 163 53 6 0 0 0 0.63089 1 20018 20018 9.544 3.7605 1 514940000 + 23353 21453 15892 16189 27476 27476 0.09681054214138385 INRHRAINL 9 Unmodified _INRHRAINL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8313598632812 2 553.830706 1105.64686 1.9862 0.0011 -0.89797 -0.00049732 1.0882 0.00060267 553.8301256468806 93.652 0.48761 93.675 93.404 93.892 0.022987 46 19 3 0 0 0 0.49272 1 52058 52058 7.9102 0 1 5629700 + 23354 21279 15893 16190 27477 27477 0.09826167305504896 INRPATNI 8 Unmodified _INRPATNI_ 0 0 0 REV__ENSG00000170456|ENST00000389082|DENND5B REV__ENSG00000170456|ENST00000389082|DENND5B MSMS AL20221201_MKP_PDAC_01 4 449.7590637207031 2 449.758884 897.503215 NaN NaN NaN NaN NaN NaN NaN 42.391 1 37.707 37.207 38.207 -4.6846 0 0 0 0.60022 1 25604 25604 34.102 0 1 + 23355 22483 15894 16191 27478 27478 0.05036320474550848 INSIFLTIL 9 Unmodified _INSIFLTIL_ 0 0 0 REV__ENST00000556668.1_1_14:75473249-75475888:+|nuORF REV__ENST00000556668.1_1_14:75473249-75475888:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.7904663085938 2 517.318243 1032.62193 1.1249 0.00058191 -0.039103 -2.0229E-05 1.0858 0.00056168 517.318271322425 89.749 0.58934 83.573 83.345 83.934 -6.1757 40 32 2 0 0 0 0.19205 1 59406 59406 14.838 6.245 1 9303700 + 23356 19208 15895 16192 27479 27479 0.10692674659571821 INSWGIPLF 9 Unmodified _INSWGIPLF_ 0 0 0 ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 MSMS AL20221201_MKP_PDAC_01 4 523.785400390625 2 523.78711 1045.55967 NaN NaN NaN NaN NaN NaN NaN 54.386 1 48.521 48.021 49.021 -5.8653 0 0 0 0.20153 1 34488 34488 30.637 0.41173 1 23357 360 15896 16193 27480 27480 0.038709483112370435 INTERIYQL 9 Unmodified _INTERIYQL_ 0 0 0 REV__ENSG00000071537|ENST00000336735|SEL1L REV__ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8807983398438 3 383.880267 1148.61897 0.46213 0.0001774 0.59171 0.00022715 1.0538 0.00040455 383.88032022286643 26.027 0.36244 23.076 22.822 23.184 -2.9511 40 23 2 0 0 0 0.32871 1 14205 14205 10.8 3.6978 1 19135000 + 23358 17494 15897 16194 27481 27481 0.05060799534749094 INTERIYQL 9 Unmodified _INTERIYQL_ 0 0 0 REV__ENSG00000071537|ENST00000336735|SEL1L REV__ENSG00000071537|ENST00000336735|SEL1L MSMS AL20221201_MKP_PDAC_01 4 575.316650390625 2 575.316763 1148.61897 NaN NaN NaN NaN NaN NaN NaN 26.028 1 23.077 22.577 23.577 -2.9511 0 0 0 0.6306 1 14301 14301 11.64 0.81637 1 + 23359 17494 15897 16194 27482 27482 0.05060799534749094 INTIADLII 9 Unmodified _INTIADLII_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 985.5906982421875 1 985.592824 984.585547 1.1434 0.001127 -1.3189 -0.0012999 -0.17541 -0.00017289 985.5914047356154 100.43 0.089554 94.256 94.202 94.291 -6.1757 7 5 2 0 0 0 0.0086904 1 67164 67164 107.19 0 1 14981000 + 23360 21791 15898 16195 27483 27483 0.09263797762855575 INVFKVHK 8 Unmodified _INVFKVHK_ 0 0 0 ENST00000518830.2_1_8:120492577-120492979:-|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF;ENSG00000074657|ENST00000591808|ZNF532 ENST00000518830.2_1_8:120492577-120492979:-|nuORF ENST00000518830.2_1_8:120492577-120492979:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.8038330078125 2 492.803094 983.591636 0.41682 0.00020541 0.14977 7.3809E-05 0.56659 0.00027922 492.8031568072296 45.763 0.31881 45.735 45.565 45.884 -0.028011 42 15 4 0 0 0 0.5284 1 24553 24553 32.117 0 1 35499000 23361 1130 15899 16196 27484 27484 0.09918360785047753 INVFKVHK 8 Unmodified _INVFKVHK_ 0 0 0 ENST00000518830.2_1_8:120492577-120492979:-|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF;ENSG00000074657|ENST00000591808|ZNF532 ENST00000518830.2_1_8:120492577-120492979:-|nuORF ENST00000518830.2_1_8:120492577-120492979:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.8048095703125 2 492.803094 983.591636 1.0695 0.00052704 0.64716 0.00031892 1.7166 0.00084597 492.8035961408246 50.515 0.38985 44.976 44.808 45.198 -5.5391 53 24 3 0 0 0 0.61462 1 31664 31664 24.674 0 1 59233000 23362 1130 15899 16196 27485 27485 0.09918360785047753 INVFKVHK 8 Unmodified _INVFKVHK_ 0 0 0 ENST00000518830.2_1_8:120492577-120492979:-|nuORF;ENST00000590442.1_1_18:56648660-56651695:+|nuORF;ENST00000592249.5_1_18:56620439-56651695:+|nuORF;ENSG00000074657|ENST00000591808|ZNF532 ENST00000518830.2_1_8:120492577-120492979:-|nuORF ENST00000518830.2_1_8:120492577-120492979:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.803094 983.591636 0.41682 0.00020541 0.14977 7.3809E-05 0.56659 0.00027922 492.8031568072296 45.763 0.31881 45.735 45.565 45.884 -0.028011 0 0 NaN 32.117 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 35499000 23363 1130 15899 16196 0.09918360785047753 INVKRRIG 8 Unmodified _INVKRRIG_ 0 0 0 REV__ENST00000409368.5_1_2:203079129-203103209:-|nuORF REV__ENST00000409368.5_1_2:203079129-203103209:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3128051757812 2 478.311618 954.608683 1.6414 0.00078511 0.63002 0.00030135 2.2714 0.0010865 478.31292997676275 109.91 0.94933 103.74 102.87 103.82 -6.1757 406 209 3 0 0 0 0.80992 3 73207 73207;73313;73421 0.69038 0 1 4378400 + 23364 26687 15900 16197 27486;27487;27488 27486 0.12956281390859203 INYIVFVGF 9 Unmodified _INYIVFVGF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.7858276367188 2 536.29731 1070.58007 0.88379 0.00047397 -2.6858 -0.0014404 -1.802 -0.00096643 536.2957046055541 57.397 0.34665 51.37 51.149 51.496 -6.0275 35 18 3 0 0 0 0.19298 1 36578 36578 13.508 0.97634 1 51649000 + 23365 21892 15901 16198 27489 27489 0.04760118971034899 INYTSELFY 9 Unmodified _INYTSELFY_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7801513671875 2 575.276772 1148.53899 0.21757 0.00012516 2.6687 0.0015353 2.8863 0.0016604 575.7796635210717 38.294 0.24313 38.311 38.17 38.413 0.017036 25 10 4 0 0 0 0.32871 1 20346 20346 15.847 1.9411 1 4124800 23366 10070 15902 16199 27490 27490 -0.02933686859091722 IPAAILHAF 9 Unmodified _IPAAILHAF_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.7839965820312 2 476.78437 951.554188 1.1493 0.00054798 -0.38554 -0.00018382 0.76377 0.00036416 476.7840177870317 70.894 0.36433 70.93 70.741 71.106 0.035515 43 16 3 0 0 0 0.0081202 2 38984 38984;39091 93.763 48.013 1 14586000 23367 2442 15903 16200 27491;27492 27491 0.07647269519407018 IPAAILHAF 9 Unmodified _IPAAILHAF_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS AL20221201_MKP_PDAC_01 4 476.7846069335938 2 476.78437 951.554188 NaN NaN NaN NaN NaN NaN NaN 87.052 1 80.876 80.376 81.376 -6.1757 0 0 0 0.0095208 1 57389 57389 93.763 48.013 1 23368 2442 15903 16200 27493 27493 0.07647269519407018 IPAAILHAF 9 Unmodified _IPAAILHAF_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS AL20221201_MKP_PDAC_01 4 476.78466796875 2 476.78437 951.554188 NaN NaN NaN NaN NaN NaN NaN 87.251 1 81.076 80.576 81.576 -6.1757 0 0 0 0.0095208 1 57530 57530 93.763 37.714 1 23369 2442 15903 16200 27494 27494 0.07647269519407018 IPAAILHAF 9 Unmodified _IPAAILHAF_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 476.78437 951.554188 0.6149 0.00029318 0.72946 0.0003478 1.3444 0.00064097 476.78472966218646 71.456 0.25797 70.978 70.839 71.097 -0.47735 0.02433 0.0005873 NaN 93.763 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 718110 23370 2442 15903 16200 0.07647269519407018 IPAAPVPSL 9 Unmodified _IPAAPVPSL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7632446289062 2 432.763104 863.511654 0.29198 0.00012636 -0.061534 -2.6629E-05 0.23044 9.9727E-05 432.7630689188675 65.163 0.36444 64.679 64.47 64.835 -0.48428 41 16 3 0 0 0 0.016494 1 35521 35521 67.035 17.366 1 5533400 23371 4453 15904 16201 27495 27495 0.07443874391185545 IPAAPVPSL 9 Unmodified _IPAAPVPSL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 864.520263671875 1 864.518931 863.511654 -0.25984 -0.00022463 -0.27788 -0.00024023 -0.53771 -0.00046486 864.5189008840343 65.151 0.23766 64.666 64.533 64.77 -0.48428 13 10 2 0 0 0 0.052168 1 35531 35531 44.407 6.2558 1 843310 23372 4453 15904 16201 27496 27496 0.07443874391185545 IPAAPVPSL 9 Unmodified _IPAAPVPSL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7635192871094 2 432.763104 863.511654 1.2602 0.00054535 0.2836 0.00012273 1.5438 0.00066808 432.7630656824392 71.605 0.36734 65.429 65.206 65.573 -6.1757 28 18 2 0 0 0 0.0084408 1 46748 46748 98.807 24.411 1 34146000 23373 4453 15904 16201 27497 27497 0.07443874391185545 IPAAPVPSL 9 Unmodified _IPAAPVPSL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 864.5199584960938 1 864.518931 863.511654 0.94754 0.00081917 0.54688 0.00047279 1.4944 0.001292 864.519087395611 71.567 0.21944 65.391 65.262 65.481 -6.1757 14 10 2 0 0 0 0.0083087 2 46779 46779;46811 97.075 26.359 1 14577000 23374 4453 15904 16201 27498;27499 27498 0.07443874391185545 IPAAQEQPF 9 Unmodified _IPAAQEQPF_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7590942382812 2 500.758549 999.502546 -0.026521 -1.328E-05 -0.33896 -0.00016974 -0.36548 -0.00018302 500.7582878696013 45.038 0.26441 45.038 44.925 45.189 0 19 13 2 0 0 0 0.16226 1 24520 24520 26.884 6.43 1 5250200 23375 7155 15905 16202 27500 27500 0.00277481034856919 IPAAQVSLVLF 11 Unmodified _IPAAQVSLVLF_ 0 0 0 ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B ENSG00000205639|ENST00000338315|MFSD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.350341796875 2 579.350074 1156.6856 1.2362 0.00071618 0.17395 0.00010078 1.4101 0.00081695 579.3501639951023 71.447 0.27711 71.486 71.365 71.642 0.039024 25 12 3 0 0 0 0.38865 1 39346 39346 21.59 1.1756 1 1531200 23376 10374 15906 16203 27501 27501 0.11352035096660984 IPAAVKLTY 9 Unmodified _IPAAVKLTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.297607421875 2 488.29731 974.580068 0.91248 0.00044556 -0.22305 -0.00010891 0.68943 0.00033665 488.29714157499484 50.684 0.42726 50.27 50.051 50.479 -0.41351 78 20 6 0 0 0 0.036857 2 27344 27241;27344 51.63 11.672 1 26839000 23377 2211 15907 16204 27502;27503 27503 0.09176118971026881 IPAAVKLTY 9 Unmodified _IPAAVKLTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2983093261719 2 488.29731 974.580068 0.5755 0.00028102 0.69285 0.00033832 1.2684 0.00061934 488.297753038246 53.454 0.26473 53.002 52.823 53.087 -0.45173 34 12 4 0 0 0 0.06187 1 28882 28882 42.095 7.6928 1 5735400 23378 2211 15907 16204 27504 27504 0.09176118971026881 IPAAVKLTY 9 Unmodified _IPAAVKLTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2983093261719 2 488.29731 974.580068 1.5377 0.00075083 -0.19318 -9.4331E-05 1.3445 0.0006565 488.2971589845748 50.309 0.42824 50.26 50.087 50.515 -0.048824 61 20 4 0 0 0 0.0044708 2 27173 27173;27273 118.89 64.121 1 31891000 23379 2211 15907 16204 27505;27506 27505 0.09176118971026881 IPAAVKLTY 9 Unmodified _IPAAVKLTY_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2978515625 2 488.29731 974.580068 0.57413 0.00028035 0.18393 8.9815E-05 0.75807 0.00037016 488.29733485036644 56.394 0.78627 50.417 49.881 50.668 -5.9769 117 45 4 0 0 0 0.085319 1 36061 36061 36.506 8.8774 1 216830000 23380 2211 15907 16204 27507 27507 0.09176118971026881 IPADIVFVL 9 Unmodified _IPADIVFVL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.593017578125 1 986.592096 985.584819 0.22556 0.00022253 0.48405 0.00047756 0.7096 0.00070009 986.5922154843406 100.58 0.12836 100.45 100.39 100.52 -0.13293 11 4 3 0 0 0 0.023164 1 54902 54902 60.39 22.238 1 4351100 23381 4364 15908 16205 27508 27508 0.09145003113803796 IPADIVFVL 9 Unmodified _IPADIVFVL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 986.5934448242188 1 986.592096 985.584819 1.4189 0.0013999 0.78089 0.00077042 2.1998 0.0021703 986.5923315312782 100.53 0.10924 100.49 100.43 100.53 -0.04216 5 3 2 0 0 0 0.016184 2 55849 55849;55853 67.344 18.998 1 7502800 23382 4364 15908 16205 27509;27510 27509 0.09145003113803796 IPADIVFVL 9 Unmodified _IPADIVFVL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.5924682617188 1 986.592096 985.584819 0.88341 0.00087157 0.42004 0.00041441 1.3035 0.001286 986.5920247656134 101.42 0.13093 95.241 95.178 95.309 -6.1757 21 6 4 0 0 0 0.016184 1 68043 68043 67.344 16.489 1 100240000 23383 4364 15908 16205 27511 27511 0.09145003113803796 IPADIVFVL 9 Unmodified _IPADIVFVL_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1;ENST00000429417.1_1_2:192746108-192746309:-|nuORF;nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.800048828125 2 493.799686 985.584819 0.90493 0.00044685 0.2459 0.00012142 1.1508 0.00056828 493.7998372446498 101.44 0.15235 95.262 95.178 95.33 -6.1757 17 7 3 0 0 0 0.14602 1 68046 68046 28.487 5.3384 1 118530000 23384 4364 15908 16205 27512 27512 0.09145003113803796 IPADTFAAL 9 Unmodified _IPADTFAAL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.4922485351562 1 918.49311 917.485833 0.19372 0.00017793 0.63809 0.00058608 0.83181 0.00076401 918.4919952521831 69.332 0.19548 69.332 69.249 69.444 0 11 8 2 0 0 0 0.10734 1 38619 38619 32.305 3.8186 1 480630 23385 5256 15909 16206 27513 27513 0.023789801488874218 IPADVPEHF 9 Unmodified _IPADVPEHF_ 0 0 0 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2971801757812 2 512.758549 1023.50255 0.38311 0.00019644 -1.1353 -0.00058214 -0.7522 -0.0003857 512.7580692110957 61.268 0.31978 61.268 61.069 61.389 0 21 13 2 0 0 0 0.18882 1 34131 34131 10.824 0 1 688590 23386 6686 15910 16207 27514 27514 -0.008265189651410765 IPADVPEHF 9 Unmodified _IPADVPEHF_ 0 0 0 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.758549 1023.50255 0.54117 0.00027749 -0.38422 -0.00019701 0.15695 8.0477E-05 512.7583563625718 61.478 0.21595 61.445 61.374 61.59 -0.032787 0.062794 0.00077811 NaN 10.824 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2038600 23387 6686 15910 16207 -0.008265189651410765 IPAEDVPLL 9 Unmodified _IPAEDVPLL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.779052734375 2 483.778951 965.543348 0.28858 0.00013961 -0.268 -0.00012965 0.020578 9.9553E-06 483.7787992731594 75.705 0.37837 75.705 75.476 75.855 0 28 15 2 0 0 0 0.12841 1 42084 42084 30.225 6.0149 1 960220 23388 5948 15911 16208 27515 27515 0.059198223544854045 IPAEDVPLL 9 Unmodified _IPAEDVPLL_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.5513916015625 1 966.550625 965.543348 0.17481 0.00016897 1.2891 0.001246 1.4639 0.0014149 966.5515828800468 75.684 0.30788 75.684 75.547 75.855 0 18 12 2 0 0 0 0.078417 1 42122 42122 38.151 16.405 1 544910 23389 5948 15911 16208 27516 27516 0.059198223544854045 IPAEEIPAY 9 Unmodified _IPAEEIPAY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7616882324219 2 501.760758 1001.50696 0.56555 0.00028377 -0.11926 -5.9842E-05 0.44629 0.00022393 501.7605741746611 52.826 0.54721 52.826 52.573 53.12 0 81 25 4 0 0 0 0.019979 2 29164 29164;29275 63.563 35.076 1 78817000 23390 10089 15912 16209 27517;27518 27517 0.006269454577591205 IPAEEIPAY 9 Unmodified _IPAEEIPAY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7606811523438 2 501.760758 1001.50696 1.2291 0.0006167 -0.42983 -0.00021567 0.79923 0.00040102 501.7607292552861 60.913 0.57461 54.765 54.462 55.036 -6.1478 98 30 4 0 0 0 0.023164 3 39312 39066;39186;39312 60.39 33.506 1 182450000 23391 10089 15912 16209 27519;27520;27521 27521 0.006269454577591205 IPAEGRVAL 9 Unmodified _IPAEGRVAL_ 0 0 0 ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENSG00000137106|ENST00000318158|GRHPR ENSG00000137106|ENST00000318158|GRHPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2772216796875 2 463.276909 924.539266 0.62031 0.00028738 -0.12928 -5.9894E-05 0.49103 0.00022748 463.2768303118793 39.744 0.46258 39.744 39.53 39.993 0 67 22 4 0 0 0 0.039985 2 21267 21267;21381 49.933 7.8384 1 24932000 23392 4900 15913 16210 27522;27523 27522 0.07397777651419801 IPAEGRVAL 9 Unmodified _IPAEGRVAL_ 0 0 0 ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF ENSG00000137106|ENST00000318158|GRHPR ENSG00000137106|ENST00000318158|GRHPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2772521972656 2 463.276909 924.539266 0.54518 0.00025257 0.41305 0.00019136 0.95823 0.00044392 463.2771096141233 44.857 0.47338 40.005 39.759 40.233 -4.852 91 36 3 0 0 0 0.094149 1 27424 27424 34.402 0.29928 1 73920000 23393 4900 15913 16210 27524 27524 0.07397777651419801 IPAELAVML 9 Unmodified _IPAELAVML_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7782897949219 2 478.777896 955.54124 0.54087 0.00025896 -0.29788 -0.00014262 0.24299 0.00011634 478.77756131163187 91.539 0.26645 91.059 90.902 91.169 -0.48092 22 15 2 0 0 0 0.5029 1 49994 49994 7.2892 2.96 1 719730 23394 10865 15914 16211 27525 27525 0.06169070345004002 IPAELAVML 9 Unmodified _IPAELAVML_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7777404785156 2 478.777896 955.54124 0.35657 0.00017072 0.21086 0.00010096 0.56743 0.00027167 478.7779026434167 99.781 0.17357 93.606 93.49 93.664 -6.1757 19 11 2 0 0 0 0.087258 1 66549 66549 36.044 14.298 1 61563000 23395 10865 15914 16211 27526 27526 0.06169070345004002 IPAESYTF 8 Unmodified _IPAESYTF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 927.4463500976562 1 927.445825 926.438549 0.57016 0.00052879 0.35302 0.0003274 0.92317 0.00085619 927.4456538551185 53.15 0.5595 53.15 52.88 53.439 0 66 25 4 0 0 0 0.094359 3 29447 29334;29447;29560 101.72 48.146 1 17615000 23396 1696 15915 16212 27527;27528;27529 27528 -0.027612991220962613 IPAESYTF 8 Unmodified _IPAESYTF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2267456054688 2 464.226551 926.438549 NaN NaN NaN NaN NaN NaN NaN 53.159 1 53.159 52.659 53.659 0 0 0 0 0.59893 1 29448 29448 34.187 7.8461 1 23397 1696 15915 16212 27530 27530 -0.027612991220962613 IPAESYTF 8 Unmodified _IPAESYTF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 927.4464721679688 1 927.445825 926.438549 0.37075 0.00034385 -0.52734 -0.00048908 -0.15659 -0.00014523 927.4454223000148 53.776 0.33518 53.324 53.167 53.502 -0.45173 26 16 2 0 0 0 0.15234 2 29159 29054;29159 86.121 39.2 1 2325300 23398 1696 15915 16212 27531;27532 27532 -0.027612991220962613 IPAESYTF 8 Unmodified _IPAESYTF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.4456176757812 1 927.445825 926.438549 1.1064 0.0010262 -0.33042 -0.00030645 0.77602 0.00071971 927.4452620617079 61.032 0.46767 54.884 54.63 55.097 -6.1478 55 24 3 0 0 0 0.11943 3 39284 39162;39284;39415 93.883 40.308 1 63489000 23399 1696 15915 16212 27533;27534;27535 27534 -0.027612991220962613 IPAESYTF 8 Unmodified _IPAESYTF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20221201_MKP_PDAC_01 4 464.2270812988281 2 464.226551 926.438549 NaN NaN NaN NaN NaN NaN NaN 61.089 1 54.942 54.442 55.442 -6.1478 0 0 0 0.34053 1 39330 39330 59.795 19.347 1 23400 1696 15915 16212 27536 27536 -0.027612991220962613 IPAESYTFF 9 Unmodified _IPAESYTFF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7612915039062 2 537.760758 1073.50696 0.25787 0.00013867 0.25248 0.00013577 0.51035 0.00027445 537.7609652304928 77.77 0.29815 77.77 77.602 77.9 0 35 14 3 0 0 0 0.54444 1 43231 43231 4.756 1.8668 1 974880 23401 1696 15916 16213 27537 27537 -0.02685054542234866 IPAESYTFF 9 Unmodified _IPAESYTFF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7611083984375 2 537.760758 1073.50696 -0.60997 -0.00032802 1.1634 0.00062562 0.55341 0.0002976 537.7613227839863 78.26 0.43955 77.774 77.532 77.971 -0.48596 62 21 4 0 0 0 0.03327 2 42861 42757;42861 53.576 17.531 1 11692000 23402 1696 15916 16213 27538;27539 27539 -0.02685054542234866 IPAESYTFF 9 Unmodified _IPAESYTFF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.333251953125 2 537.760758 1073.50696 NaN NaN NaN NaN NaN NaN NaN 77.711 1 77.764 77.264 78.264 0.052452 0 0 0 0.27711 1 42897 42897 26.341 9.2547 1 23403 1696 15916 16213 27540 27540 -0.02685054542234866 IPAESYTFF 9 Unmodified _IPAESYTFF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7606811523438 2 537.760758 1073.50696 0.17127 9.21E-05 0.87832 0.00047232 1.0496 0.00056443 537.7609102962499 85.528 0.70187 79.352 78.992 79.694 -6.1757 96 42 3 0 0 0 0.052168 1 56199 56199 44.407 2.3125 1 81057000 23404 1696 15916 16213 27541 27541 -0.02685054542234866 IPAEVSQATEL 11 Unmodified _IPAEVSQATEL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.3073120117188 2 579.306061 1156.59757 0.24271 0.0001406 1.5186 0.00087976 1.7614 0.0010204 579.3068778198611 51.719 0.18108 51.719 51.642 51.823 0 12 7 2 0 0 0 0.15156 1 28605 28605 36.506 23.975 1 2143800 23405 4921 15917 16214 27542 27542 0.025533697154060064 IPAFERTPF 9 Unmodified _IPAFERTPF_ 0 0 0 ENST00000424596.1_1_7:56118831-56118894:-|nuORF ENST00000424596.1_1_7:56118831-56118894:-|nuORF ENST00000424596.1_1_7:56118831-56118894:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.289794921875 2 539.290017 1076.56548 0.43699 0.00023566 -0.67366 -0.0003633 -0.23667 -0.00012763 539.2899331564371 59.035 0.24611 58.975 58.819 59.065 -0.060719 19 11 2 0 0 0 0.1685 1 32189 32189 26.268 11.43 1 2338500 23406 13151 15918 16215 27543 27543 0.030260468229016624 IPAFIHAKQQY 11 Unmodified _IPAFIHAKQQY_ 0 0 0 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9132080078125 3 439.243429 1314.70846 0.70105 0.00030793 0.83745 0.00036784 1.5385 0.00067578 439.91360213981187 40.632 0.27072 40.637 40.509 40.779 0.0050545 26 12 3 0 0 0 0.62014 1 21681 21681 10.315 4.9125 1 5769700 23407 3007 15919 16216 27544 27544 0.0636905421413303 IPAFIHAKQQY 11 Unmodified _IPAFIHAKQQY_ 0 0 0 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2435913085938 3 439.243429 1314.70846 0.65287 0.00028677 1.3598 0.00059729 2.0127 0.00088406 439.24420367162406 45.016 0.24204 40.164 40.007 40.249 -4.852 28 15 2 0 0 0 0.0075717 1 27475 27475 70.929 36.707 1 14429000 23408 3007 15919 16216 27545 27545 0.0636905421413303 IPAGGTDDYF 10 Unmodified _IPAGGTDDYF_ 0 0 0 ENST00000399215.5_1_21:37420668-37429417:-|nuORF ENST00000399215.5_1_21:37420668-37429417:-|nuORF ENST00000399215.5_1_21:37420668-37429417:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.7144775390625 2 528.237647 1054.46074 1.0528 0.00055612 -0.26743 -0.00014126 0.78535 0.00041485 528.2375988755542 48.39 0.29926 43.156 43.033 43.333 -5.2339 30 17 2 0 0 0 0.22667 1 30064 30064 10.824 0 1 18552000 23409 12862 15920 16217 27546 27546 -0.06431119444323485 IPAGGVLTL 9 Unmodified _IPAGGVLTL_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.518798828125 1 840.518931 839.511654 0.44715 0.00037584 0.98035 0.000824 1.4275 0.0011998 840.519774992443 78.832 0.55469 72.657 72.324 72.879 -6.1757 49 33 2 0 0 0 0.0058506 2 51664 51531;51664 114.94 44.228 1 7301600 23410 2298 15921 16218 27547;27548 27548 0.08547874391183541 IPAHPGTVDF 10 Unmodified _IPAHPGTVDF_ 0 0 0 REV__nc|ENSG00000215811|A8MVZ5|BTNL10P REV__nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2721557617188 2 527.271824 1052.5291 0.5426 0.0002861 0.48477 0.00025561 1.0274 0.0005417 527.2719769240067 47.586 0.24321 47.233 47.085 47.328 -0.3526 32 11 4 0 0 0 0.2178 1 25483 25483 32.305 2.0807 1 40636000 + 23411 29944 15922 16219 27549 27549 0.0049316992619878874 IPAHPGTVDF 10 Unmodified _IPAHPGTVDF_ 0 0 0 REV__nc|ENSG00000215811|A8MVZ5|BTNL10P REV__nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2723388671875 2 527.271824 1052.5291 0.8231 0.000434 0.16323 8.6068E-05 0.98633 0.00052006 527.2717834009205 47.295 0.20265 47.257 47.138 47.34 -0.038643 21 9 3 0 0 0 0.42068 1 25482 25482 20.454 5.6154 1 2091900 + 23412 29944 15922 16219 27550 27550 0.0049316992619878874 IPAHPGTVDF 10 Unmodified _IPAHPGTVDF_ 0 0 0 REV__nc|ENSG00000215811|A8MVZ5|BTNL10P REV__nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.271824 1052.5291 0.5426 0.0002861 0.48477 0.00025561 1.0274 0.0005417 527.2719769240067 47.586 0.24321 47.233 47.085 47.328 -0.3526 -0.011777 6.3008E-05 NaN 32.305 32 11 4 NaN NaN NaN NaN 0 NaN NaN 0 40636000 + 23413 29944 15922 16219 0.0049316992619878874 IPAHPGTVDF 10 Unmodified _IPAHPGTVDF_ 0 0 0 REV__nc|ENSG00000215811|A8MVZ5|BTNL10P REV__nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 527.271824 1052.5291 0.8231 0.000434 0.16323 8.6068E-05 0.98633 0.00052006 527.2717834009205 47.295 0.20265 47.257 47.138 47.34 -0.038643 0.011777 -0.00027607 NaN 32.305 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2091900 + 23414 29944 15922 16219 0.0049316992619878874 IPAKIKKRK 9 Unmodified _IPAKIKKRK_ 0 0 0 REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1082.266479492188 1 1081.75681 1080.74953 -0.010684 -1.1558E-05 -0.092067 -9.9594E-05 -0.10275 -0.00011115 1081.7561250707745 58.007 0.26822 51.98 51.888 52.156 -6.0275 18 14 2 0 0 0 0.21798 1 37119 37119 0.6015 0 1 27349000 + 23415 25951 15923 16220 27551 27551 0.21238860044263674 IPAKPPVSF 9 Unmodified _IPAKPPVSF_ 0 0 0 nc|ENSG00000153066|Q6PKC3-3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2842712402344 2 478.284203 954.553853 1.3994 0.00066931 -0.51932 -0.00024838 0.88008 0.00042093 478.2839002611508 50.182 0.54632 50.134 49.805 50.352 -0.048824 55 26 3 0 0 0 0.14 2 27107 27107;27210 29.082 10.947 1 2177100 23416 6234 15924 16221 27552;27553 27552 0.07475849799573098 IPAKPPVSF 9 Unmodified _IPAKPPVSF_ 0 0 0 nc|ENSG00000153066|Q6PKC3-3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 MSMS AL20221201_MKP_PDAC_01 4 478.2841796875 2 478.284203 954.553853 NaN NaN NaN NaN NaN NaN NaN 56.12 1 50.143 49.643 50.643 -5.9769 0 0 0 0.61214 1 35783 35783 12.241 2.8932 1 23417 6234 15924 16221 27554 27554 0.07475849799573098 IPALRDISI 9 Unmodified _IPALRDISI_ 0 0 0 nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP nc|ENSG00000185808|P57054-3|PIGP nc|ENSG00000185808|P57054-3|PIGP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3052978515625 2 499.305667 996.596781 0.013778 6.8792E-06 0.15002 7.4907E-05 0.1638 8.1786E-05 499.30556793104887 65.482 0.27011 64.997 64.854 65.124 -0.48428 19 12 2 0 0 0 0.18144 1 35732 35732 24.991 1.2012 1 1803700 23418 9415 15925 16222 27555 27555 0.09834619856997051 IPANIHIY 8 Unmodified _IPANIHIY_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000543908.5_1_17:43163921-43175921:+|nuORF;ENST00000590310.1_1_17:43174544-43177067:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7660827636719 2 470.766178 939.517802 0.82567 0.0003887 0.14099 6.6374E-05 0.96666 0.00045507 470.7661552673263 49.711 0.35199 49.319 49.119 49.471 -0.3923 37 17 3 0 0 0 0.37649 1 26697 26697 46.921 14.804 1 3513000 23419 4821 15926 16223 27556 27556 0.04562392622699463 IPANIHIY 8 Unmodified _IPANIHIY_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000543908.5_1_17:43163921-43175921:+|nuORF;ENST00000590310.1_1_17:43174544-43177067:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7661437988281 2 470.766178 939.517802 0.99828 0.00046995 -0.72177 -0.00033979 0.2765 0.00013017 470.76599736626207 55.077 0.41316 49.156 48.858 49.272 -5.9211 46 25 2 0 0 0 0.40035 2 34877 34877;35016 44.407 19.733 1 22276000 23420 4821 15926 16223 27557;27558 27557 0.04562392622699463 IPANPALLTY 10 Unmodified _IPANPALLTY_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.8060913085938 2 536.8055 1071.59645 NaN NaN NaN NaN NaN NaN NaN 68.363 1 67.882 67.382 68.382 -0.48071 0 0 0 0.78298 1 37362 37362 13.042 0.51092 1 23421 791 15927 16224 27559 27559 0.06351200137146407 IPANTRLHTTL 11 Unmodified _IPANTRLHTTL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;ENST00000565781.5_1_16:56535238-56535415:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MSMS AL20221201_MKP_PDAC_01 4 412.9070129394531 3 412.906816 1235.69862 NaN NaN NaN NaN NaN NaN NaN 36.382 1 32.189 31.689 32.689 -4.1928 0 0 0 0.18372 1 21239 21239 40.317 25.479 1 23422 3830 15928 16225 27560 27560 0.09019866208745952 IPANWKTEL 9 Unmodified _IPANWKTEL_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENST00000466653.1_1_1:235392530-235490234:-|nuORF nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2949829101562 2 536.295299 1070.57605 0.38769 0.00020792 1.0986 0.00058916 1.4863 0.00079708 536.2958702764313 55.948 0.31803 50.027 49.819 50.137 -5.9211 25 18 2 0 0 0 0.2546 1 35732 35732 19.362 2.249 1 16807000 23423 756 15929 16226 27561 27561 0.043580294773164496 IPAPDHPAL 9 Unmodified _IPAPDHPAL_ 0 0 0 ENST00000440177.6_1_19:42753452-42753692:-|nuORF ENST00000440177.6_1_19:42753452-42753692:-|nuORF ENST00000440177.6_1_19:42753452-42753692:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7561340332031 2 465.75581 929.497067 0.67994 0.00031669 -0.58747 -0.00027362 0.092467 4.3067E-05 465.7555193244339 39.236 0.26667 39.236 39.096 39.362 0 26 12 3 0 0 0 0.023164 1 21005 21005 60.39 24.345 1 4740800 23424 13384 15930 16227 27562 27562 0.029498022430288984 IPAPGSGVSF 10 Unmodified _IPAPGSGVSF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 931.4882202148438 1 931.488359 930.481082 -0.26555 -0.00024735 0.15914 0.00014824 -0.10641 -9.9117E-05 931.4885400611468 56.739 0.4287 56.254 56.095 56.523 -0.48554 50 21 3 0 0 0 2.5391E-11 3 30862 30760;30862;30961 164.52 92.593 1 7204600 23425 2299 15931 16228 27563;27564;27565 27564 0.013060960061466176 IPAPGSGVSF 10 Unmodified _IPAPGSGVSF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2466430664062 2 466.247818 930.481082 -0.30361 -0.00014156 -0.47959 -0.00022361 -0.7832 -0.00036517 466.2473864829715 56.748 0.4287 56.263 56.095 56.523 -0.48554 57 21 4 0 0 0 0.037795 1 30767 30767 64.236 8.0593 1 11255000 23426 2299 15931 16228 27566 27566 0.013060960061466176 IPAPGSGVSF 10 Unmodified _IPAPGSGVSF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2484741210938 2 466.247818 930.481082 1.3806 0.00064371 -1.6007 -0.00074634 -0.22012 -0.00010263 466.24774826885255 64.131 0.86505 57.955 57.45 58.315 -6.1757 95 46 3 0 0 0 0.021369 2 41522 41387;41522 74.423 10.372 1 88125000 23427 2299 15931 16228 27567;27568 27568 0.013060960061466176 IPAPGSGVSF 10 Unmodified _IPAPGSGVSF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 931.489013671875 1 931.488359 930.481082 1.4852 0.0013835 -0.3568 -0.00033236 1.1284 0.0010511 931.4879223654093 64.161 0.50146 57.986 57.719 58.221 -6.1757 58 26 3 0 0 0 4.7059E-07 3 41533 41400;41533;41658 136.33 81.56 1 24505000 23428 2299 15931 16228 27569;27570;27571 27570 0.013060960061466176 IPAQHITLF 9 Unmodified _IPAQHITLF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3013305664062 2 520.300384 1038.58622 0.27557 0.00014338 0.78329 0.00040755 1.0589 0.00055093 520.3009009654877 63.212 0.40655 62.726 62.542 62.948 -0.48617 43 18 3 0 0 0 0.08691 1 34460 34460 36.127 3.8215 1 4521700 23429 4276 15932 16229 27572 27572 0.06846637202556849 IPAQHITLF 9 Unmodified _IPAQHITLF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3004760742188 2 520.300384 1038.58622 0.27543 0.0001433 0.40098 0.00020863 0.67641 0.00035194 520.3006499725043 62.825 0.54275 62.803 62.486 63.029 -0.021614 70 27 4 0 0 0 0.020973 2 34381 34273;34381 62.573 18.714 1 33465000 23430 4276 15932 16229 27573;27574 27574 0.06846637202556849 IPAQHITLF 9 Unmodified _IPAQHITLF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3008422851562 2 520.300384 1038.58622 0.7128 0.00037087 0.3918 0.00020385 1.1046 0.00057472 520.3005696811913 67.973 0.65668 61.797 61.531 62.187 -6.1757 66 38 2 0 0 0 0.05447 2 44280 44280;44421 43.858 9.4566 1 72218000 23431 4276 15932 16229 27575;27576 27575 0.06846637202556849 IPAQHITLF 9 Unmodified _IPAQHITLF_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 520.300384 1038.58622 1.0825 0.00056322 0.3261 0.00016967 1.4086 0.0007329 520.3013336803546 68.849 0.11357 62.673 62.592 62.705 -6.1757 -0.060848 -0.0002794 NaN 62.573 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 10330000 23432 4276 15932 16229 0.06846637202556849 IPASAESLIA 10 Unmodified _IPASAESLIA_ 0 0 0 REV__ENST00000522843.5_1_8:59477592-59488665:+|nuORF REV__ENST00000522843.5_1_8:59477592-59488665:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2744445800781 2 486.274032 970.533512 -0.21315 -0.00010365 -0.99621 -0.00048443 -1.2094 -0.00058808 486.2740921488237 41.679 0.41872 41.679 41.462 41.881 0 63 21 4 0 0 0 0.063761 1 22424 22424 54.774 3.1437 1 46535000 + 23433 20253 15933 16230 27577 27577 0.04706634349099659 IPASGLHLF 9 Unmodified _IPASGLHLF_ 0 0 0 ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7738037109375 2 477.774003 953.533452 0.89877 0.00042941 0.52677 0.00025168 1.4255 0.00068109 477.7735261511348 66.604 0.52723 66.613 66.28 66.807 0.0095596 38 25 2 0 0 0 0.013472 1 36557 36557 70.716 30.267 1 7805000 23434 6398 15934 16231 27578 27578 0.05482679139765878 IPASKELL 8 Unmodified _IPASKELL_ 0 0 0 ENST00000432901.3_1_20:18123253-18123604:+|nuORF ENST00000432901.3_1_20:18123253-18123604:+|nuORF ENST00000432901.3_1_20:18123253-18123604:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 871.4168701171875 1 870.529495 869.522219 -0.10971 -9.5506E-05 1.0867 0.00094605 0.97704 0.00085054 870.5308402385815 71.277 0.24417 70.8 70.705 70.949 -0.47736 17 10 2 0 0 0 0.80143 1 38963 38963 5.7604 0 1 887360 23435 13283 15935 16232 27579 27579 0.08223857045629757 IPASLPVEF 9 Unmodified _IPASLPVEF_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7735595703125 2 486.773668 971.532783 NaN NaN NaN NaN NaN NaN NaN 82.365 1 81.87 81.37 82.37 -0.4952 0 0 0 0.6032 1 45092 45092 12.532 3.1841 1 23436 4073 15936 16233 27580 27580 0.045878397000592486 IPASNRLLL 9 Unmodified _IPASNRLLL_ 0 0 0 ERCC6L|p.L361Pfs*6|1|0.23|ENSG00000186871|chrX:72207685-72207686|-/G|frameshift_variant;ENSG00000186871|ENST00000334463|ERCC6L ERCC6L|p.L361Pfs*6|1|0.23|ENSG00000186871|chrX:72207685-72207686|-/G|frameshift_variant ERCC6L|p.L361Pfs*6|1|0.23|ENSG00000186871|chrX:72207685-72207686|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8141174316406 2 498.813659 995.612765 -0.033906 -1.6913E-05 0.64617 0.00032232 0.61227 0.00030541 498.81395334177734 53.997 0.63327 53.93 53.725 54.359 -0.066936 67 31 3 0 0 0 0.18144 1 29488 29488 24.991 6.8446 1 5266700 23437 9516 15937 16234 27581 27581 0.11478326093913438 IPASSSFVY 9 Unmodified _IPASSSFVY_ 0 0 0 ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN ENSG00000261609|ENST00000648994|GAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 970.4887084960938 1 970.488024 969.480748 0.15043 0.000146 0.43886 0.0004259 0.58929 0.0005719 970.4885426473718 55.068 0.36506 54.59 54.409 54.774 -0.47798 25 17 2 0 0 0 0.016184 2 29800 29800;29904 67.344 44.195 1 1877400 23438 10841 15938 16235 27582;27583 27582 -0.005213237137013493 IPASVEHGRVY 11 Unmodified _IPASVEHGRVY_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8876342773438 3 409.887533 1226.64077 -0.74957 -0.00030724 0.84503 0.00034637 0.095457 3.9127E-05 409.88778667069283 27.582 0.23161 27.582 27.469 27.7 0 22 10 3 0 0 0 0.47137 1 14198 14198 14.825 5.0605 1 3913400 23439 1698 15939 16236 27584 27584 0.036516042833454776 IPASVEHGRVY 11 Unmodified _IPASVEHGRVY_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8875732421875 3 409.887533 1226.64077 NaN NaN NaN NaN NaN NaN NaN 27.543 1 27.496 26.996 27.996 -0.046408 0 0 0 0.67846 1 14197 14197 18.853 8.5376 1 23440 1698 15939 16236 27585 27585 0.036516042833454776 IPASVEHGRVY 11 Unmodified _IPASVEHGRVY_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MSMS AL20221201_MKP_PDAC_01 4 409.8877563476562 3 409.887533 1226.64077 NaN NaN NaN NaN NaN NaN NaN 31.097 1 27.402 26.902 27.902 -3.6958 0 0 0 0.34378 1 17588 17588 25.155 16.403 1 23441 1698 15939 16236 27586 27586 0.036516042833454776 IPATALLPTM 10 Oxidation (M) _IPATALLPTM(Oxidation (M))_ IPATALLPTM(1) IPATALLPTM(89) 0 0 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2941284179688 2 522.293911 1042.57327 0.51058 0.00026667 -0.36684 -0.0001916 0.14375 7.5078E-05 522.2937720542999 64.091 0.41154 63.606 63.432 63.844 -0.48512 49 20 3 0 0 0 0.0093317 2 35025 34923;35025 88.904 42.647 1 5607000 23442 860 15940 16237 27587;27588 27588 132 0.053684380281538324 IPATALLPTM 10 Oxidation (M) _IPATALLPTM(Oxidation (M))_ IPATALLPTM(1) IPATALLPTM(100) 0 0 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2939453125 2 522.293911 1042.57327 0.70924 0.00037043 0.31112 0.0001625 1.0204 0.00053293 522.2941951793448 63.673 0.42914 63.662 63.453 63.882 -0.010532 45 20 3 0 0 0 0.0044003 1 34809 34809 100.37 52.623 1 10418000 23443 860 15940 16237 27589 27589 132 0.053684380281538324 IPATALLPTM 10 Unmodified _IPATALLPTM_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2979125976562 2 514.296453 1026.57835 0.90145 0.00046361 -0.14627 -7.5227E-05 0.75518 0.00038839 514.2964830827397 90.997 0.74426 84.821 84.489 85.233 -6.1757 97 43 3 0 0 0 0.0093317 2 60215 60080;60215 88.904 39.594 1 21681000 23444 860 15940 16238 27590;27591 27591 0.06612741890762663 IPATFWSLF 9 Unmodified _IPATFWSLF_ 0 0 0 ENSG00000167910|ENST00000301645|CYP7A1 ENSG00000167910|ENST00000301645|CYP7A1 ENSG00000167910|ENST00000301645|CYP7A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2885131835938 2 541.289485 1080.56442 0.46763 0.00025313 0.2141 0.00011589 0.68174 0.00036902 541.2895151438067 47.474 0.34737 47.122 47 47.347 -0.3526 21 16 2 0 0 0 0.1685 1 25453 25453 21.747 3.6003 1 3587500 23445 7682 15941 16239 27592 27592 0.027358324539818568 IPATRRVVL 9 Unmodified _IPATRRVVL_ 0 0 0 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8355102539062 2 512.834926 1023.6553 1.2399 0.00063588 -0.31331 -0.00016068 0.92662 0.0004752 512.8347172713227 35.937 0.37125 31.744 31.527 31.899 -4.1928 61 23 3 0 0 0 0.12424 1 20931 20931 30.637 8.8899 1 22105000 23446 9602 15942 16240 27593 27593 0.14441721222135584 IPAVSISYVVY 11 Unmodified _IPAVSISYVVY_ 0 0 0 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;ENST00000466983.1_1_9:130869513-130869720:+|nuORF;ENSG00000125648|ENST00000301454|SLC25A23 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;ENSG00000125648|ENST00000301454|SLC25A23 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8389892578125 2 605.839539 1209.66453 0.12933 7.8351E-05 0.47756 0.00028932 0.60689 0.00036768 605.8396242814703 93.541 0.29168 87.366 87.247 87.539 -6.1757 25 17 2 0 0 0 0.29431 1 61860 61860 41.84 25.691 1 8866100 23447 16259;3866 15943 16241 27594 27594 0.06808024997144457 IPAYLFSWASL 11 Unmodified _IPAYLFSWASL_ 0 0 0 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3382568359375 2 634.339707 1266.66486 -0.69993 -0.000444 -2.1083 -0.0013374 -2.8082 -0.0017814 634.3388012517709 77.114 0.2262 76.631 76.517 76.743 -0.4826 21 9 3 0 0 0 0.54936 1 42213 42213 13.906 1.6654 1 714460 23448 525 15944 16242 27595 27595 0.04219444716977705 IPAYPGVVY 9 Unmodified _IPAYPGVVY_ 0 0 0 nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2 nc|ENSG00000100320|O43251-10|RBFOX2 nc|ENSG00000100320|O43251-10|RBFOX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7701721191406 2 489.768386 977.522219 NaN NaN NaN NaN NaN NaN NaN 63.198 1 62.712 62.212 63.212 -0.48617 0 0 0 0.38239 1 34464 34464 20.871 5.024 1 23449 16084 15945 16243 27596 27596 0.03255857045610355 IPAYSHLRY 9 Unmodified _IPAYSHLRY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8699645996094 3 373.869703 1118.58728 -0.061268 -2.2906E-05 -0.37585 -0.00014052 -0.43712 -0.00016343 373.8697666624231 35.292 0.25032 35.319 35.186 35.436 0.027401 26 11 3 0 0 0 0.34134 1 18638 18638 10.899 3.7972 1 6586400 23450 1378 15946 16244 27597 27597 0.032728515714552486 IPAYSHLRY 9 Unmodified _IPAYSHLRY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8703918457031 3 373.869703 1118.58728 1.4218 0.00053155 0.17122 6.4013E-05 1.593 0.00059556 373.86993955709517 39.326 0.44853 34.875 34.659 35.107 -4.4509 66 27 3 0 0 0 0.34134 1 23294 23294 10.899 3.7972 1 35650000 23451 1378 15946 16244 27598 27598 0.032728515714552486 IPAYSHLRYVF 11 Unmodified _IPAYSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.9157409667969 3 455.915312 1364.72411 1.0516 0.00047943 -0.15676 -7.1471E-05 0.8948 0.00040795 455.9150117968138 57.534 0.27467 57.468 57.339 57.614 -0.066036 35 13 4 0 0 0 0.14513 1 31298 31298 37.251 29.405 1 6776100 23452 1378 15947 16245 27599 27599 0.05633340731151293 IPCAIDQDPY 10 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))AIDQDPY_ IPC(1)AIDQDPY IPC(71)AIDQDPY 0 1 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2724609375 2 596.271164 1190.52777 0.24487 0.00014601 0.52778 0.0003147 0.77264 0.00046071 596.2717290046571 55.819 0.52151 49.898 49.587 50.108 -5.9211 70 30 3 0 0 0 0.024981 2 35445 35445;35571 71.134 34.627 1 43442000 23453 5208 15948 16246 27600;27601 27600 532 -0.059868322249030825 IPCAIDQDPYF 11 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))AIDQDPYF_ IPC(1)AIDQDPYF IPC(96)AIDQDPYF 0 1 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.8062133789062 2 669.805371 1337.59619 0.016663 1.1161E-05 -0.17761 -0.00011896 -0.16095 -0.0001078 669.8055562356351 76.747 0.65625 70.571 70.333 70.989 -6.1757 83 34 3 0 0 0 4.539E-06 4 50213 50097;50213;50325;50446 96.367 67.285 1 36760000 23454 5208 15949 16247 27602;27603;27604;27605 27603 532 -0.05910587645053056 IPCCRPPPF 9 Unmodified _IPCCRPPPF_ 0 0 0 REV__ENST00000568956.1_1_19:56128203-56128404:+|nuORF REV__ENST00000568956.1_1_19:56128203-56128404:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2546997070312 2 515.254065 1028.49358 1.0888 0.00056101 -0.01718 -8.8521E-06 1.0716 0.00055216 515.2538688620485 65.968 0.22472 65.978 65.855 66.08 0.0095596 19 11 2 0 0 0 0.28047 1 36191 36191 18.135 2.2878 1 3944100 + 23455 28955 15950 16248 27606 27606 -0.019529071268379994 IPCCRPPPF 9 Unmodified _IPCCRPPPF_ 0 0 0 REV__ENST00000568956.1_1_19:56128203-56128404:+|nuORF REV__ENST00000568956.1_1_19:56128203-56128404:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 515.254065 1028.49358 1.0888 0.00056101 -0.01718 -8.8521E-06 1.0716 0.00055216 515.2538688620485 65.968 0.22472 65.978 65.855 66.08 0.0095596 -0.10109 -0.00067363 NaN 18.135 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3944100 + 23456 28955 15950 16248 -0.019529071268379994 IPCEEGDKL 9 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))EEGDKL_ IPC(1)EEGDKL IPC(58)EEGDKL 0 1 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7522583007812 2 530.752607 1059.49066 0.51314 0.00027235 -0.49643 -0.00026348 0.01671 8.8691E-06 530.7521979616178 32.894 0.30413 29.037 28.796 29.1 -3.8562 29 16 2 0 0 0 0.025842 1 18751 18751 57.722 13.864 1 14864000 23457 7019 15951 16249 27607 27607 687 -0.03670503770649702 IPCGITNAL 9 Carbamidomethyl (C) _IPC(Carbamidomethyl (C))GITNAL_ IPC(1)GITNAL IPC(71)GITNAL 0 1 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7555236816406 2 479.754953 957.495352 0.88359 0.00042391 0.45762 0.00021955 1.3412 0.00064345 479.7550933240104 66.134 0.51326 59.958 59.643 60.156 -6.1757 55 29 2 0 0 0 0.013472 2 43012 42872;43012 70.716 18.447 1 22770000 23458 4838 15952 16250 27608;27609 27609 493 0.01490425162774045 IPCGVAAMHV 10 Unmodified _IPCGVAAMHV_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2509460449219 2 499.251523 996.488493 0.53433 0.00026676 -1.0142 -0.00050633 -0.47985 -0.00023956 499.2516376721108 66.738 0.20024 66.738 66.616 66.816 0 12 8 2 0 0 0 0.57332 1 37243 37243 12.532 0.89125 1 1087900 + 23459 17021 15953 16251 27610 27610 -0.009892109894508394 IPCGVAAMHV 10 Unmodified _IPCGVAAMHV_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.251523 996.488493 0.53433 0.00026676 -1.0142 -0.00050633 -0.47985 -0.00023956 499.2516376721108 66.738 0.20024 66.738 66.616 66.816 0 0 0 NaN 12.532 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1087900 + 23460 17021 15953 16251 -0.009892109894508394 IPCPRSELRL 10 Unmodified _IPCPRSELRL_ 0 0 0 nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-4|OGG1;nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-3|OGG1;ENST00000441094.5_1_3:9792033-9793586:+|nuORF;ENST00000436092.1_1_3:9791892-9792424:+|nuORF nc|ENSG00000114026|O15527-5|OGG1 nc|ENSG00000114026|O15527-5|OGG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3348388671875 2 592.334433 1182.65431 1.0342 0.00061257 -0.9162 -0.0005427 0.11797 6.9875E-05 592.334386477838 46.963 0.22261 46.93 46.774 46.996 -0.033417 23 10 3 0 0 0 0.40136 1 25297 25297 21.537 1.1224 1 10775000 23461 16130 15954 16252 27611 27611 0.07029138790926481 IPCYFDAIL 9 Unmodified _IPCYFDAIL_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7677612304688 2 527.767529 1053.5205 0.72014 0.00038007 -1.1387 -0.00060097 -0.41856 -0.0002209 527.7669892893779 49.161 0.46363 43.764 43.572 44.036 -5.3961 66 30 3 0 0 0 0.30562 1 30768 30768 16.942 16.942 1 147470000 23462 6893 15955 16253 27612 27612 -0.004115200346632264 IPDAHSAPP 9 Unmodified _IPDAHSAPP_ 0 0 0 ENSG00000184361|ENST00000331780|SPATA32 ENSG00000184361|ENST00000331780|SPATA32 ENSG00000184361|ENST00000331780|SPATA32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.729248046875 2 452.729792 903.445031 0.47043 0.00021298 -0.79077 -0.00035801 -0.32034 -0.00014503 452.729424689817 39.557 0.37747 39.557 39.362 39.74 0 37 17 3 0 0 0 0.2001 1 21158 21158 23.148 5.0134 1 7913500 23463 9249 15956 16254 27613 27613 -0.010553611707223354 IPDAHSAPP 9 Unmodified _IPDAHSAPP_ 0 0 0 ENSG00000184361|ENST00000331780|SPATA32 ENSG00000184361|ENST00000331780|SPATA32 ENSG00000184361|ENST00000331780|SPATA32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7301940917969 2 452.729792 903.445031 0.65082 0.00029465 0.13338 6.0387E-05 0.7842 0.00035503 452.72982159251916 44.895 0.38727 40.043 39.879 40.267 -4.852 47 25 2 0 0 0 0.12841 2 27554 27420;27554 30.225 5.5509 1 19905000 23464 9249 15956 16254 27614;27615 27615 -0.010553611707223354 IPDASKLQF 9 Unmodified _IPDASKLQF_ 0 0 0 nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7828063964844 2 509.782025 1017.5495 0.12691 6.4697E-05 0.092508 4.7159E-05 0.21942 0.00011186 509.78204738024994 53.191 0.38501 52.739 52.515 52.9 -0.45173 45 19 3 0 0 0 0.05483 2 28722 28722;28833 43.772 16.144 1 6060900 23465 4899 15957 16255 27616;27617 27616 0.04142340585997317 IPDASKLQF 9 Unmodified _IPDASKLQF_ 0 0 0 nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.724853515625 2 509.782025 1017.5495 0.82728 0.00042173 0.80055 0.0004081 1.6278 0.00082984 509.7823123634145 59.313 0.41108 53.238 53.081 53.492 -6.0745 37 22 2 0 0 0 0.11314 1 37968 37968 31.268 8.5321 1 32619000 23466 4899 15957 16255 27618 27618 0.04142340585997317 IPDASKLQFIL 11 Unmodified _IPDASKLQFIL_ 0 0 0 nc|ENSG00000137100|O75935-2|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-3|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 nc|ENSG00000137100|O75935-2|DCTN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8677978515625 2 622.866089 1243.71762 1.1818 0.00073611 0.56773 0.00035362 1.7495 0.0010897 622.8663305280413 97.3 0.33197 91.124 90.929 91.261 -6.1757 36 18 3 0 0 0 0.0017085 2 64443 64443;64562 80.896 31.368 1 19713000 23467 4899 15958 16256 27619;27620 27619 0.10551402779788077 IPDDLKQLY 9 Unmodified _IPDDLKQLY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8002319335938 2 552.800414 1103.58628 0.72041 0.00039824 -0.86327 -0.00047722 -0.14286 -7.8973E-05 552.7998275884233 53.54 0.35257 53.54 53.353 53.705 0 53 16 4 0 0 0 0.010301 2 29733 29623;29733 79.596 27.328 1 51633000 23468 7600 15959 16257 27621;27622 27622 0.03862592411906007 IPDDLKQLY 9 Unmodified _IPDDLKQLY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8007202148438 2 552.800414 1103.58628 0.41343 0.00022854 1.718 0.00094971 2.1314 0.0011783 552.8002525483198 54.076 0.29936 53.609 53.466 53.765 -0.46664 33 14 3 0 0 0 0.020973 1 29354 29354 62.573 10.304 1 24409000 23469 7600 15959 16257 27623 27623 0.03862592411906007 IPDDLKQLY 9 Unmodified _IPDDLKQLY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7999877929688 2 552.800414 1103.58628 1.0411 0.0005755 -1.0223 -0.0005651 0.018808 1.0397E-05 552.7997723366173 60.446 0.6364 54.298 54.031 54.667 -6.1478 92 33 4 0 0 0 0.0019086 3 38791 38791;38913;39039 133.05 33.253 1 244950000 23470 7600 15959 16257 27624;27625;27626 27624 0.03862592411906007 IPDEQIVVM 9 Oxidation (M) _IPDEQIVVM(Oxidation (M))_ IPDEQIVVM(1) IPDEQIVVM(52) 0 0 1 ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN ENSG00000100600|ENST00000334869|LGMN ENSG00000100600|ENST00000334869|LGMN MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2730712890625 2 530.273175 1058.5318 0.35912 0.00019043 -1.3416 -0.00071141 -0.98246 -0.00052097 530.2738177394837 55.872 0.59082 49.951 49.84 50.431 -5.9211 68 34 4 0 0 0 0.03568 1 35600 35600 52.268 14.294 1 140110000 23471 1850 15960 16258 27627 27627 305 0.004872572688327637 IPDEQIVVM 9 Unmodified _IPDEQIVVM_ 0 0 0 ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN ENSG00000100600|ENST00000334869|LGMN ENSG00000100600|ENST00000334869|LGMN MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2761840820312 2 522.275718 1042.53688 1.1503 0.00060079 -0.26869 -0.00014033 0.88164 0.00046046 522.2757214487827 71.924 0.45497 65.748 65.443 65.898 -6.1757 73 25 4 0 0 0 0.03568 2 46959 46959;47092 52.268 8.4101 1 260430000 23472 1850 15960 16259 27628;27629 27628 0.017315611314415946 IPDGCGVKY 9 Carbamidomethyl (C) _IPDGC(Carbamidomethyl (C))GVKY_ IPDGC(1)GVKY IPDGC(72)GVKY 0 1 0 ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF ENSG00000165496|ENST00000298283|RPL10L ENSG00000165496|ENST00000298283|RPL10L MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7449340820312 2 504.744585 1007.47462 0.93358 0.00047122 -0.34886 -0.00017608 0.58472 0.00029513 504.74453661791017 34.836 0.70322 30.741 30.401 31.105 -4.0951 107 41 3 0 0 0 0.013041 3 20088 19964;20088;20210 71.922 41.286 1 65393000 23473 5845 15961 16260 27630;27631;27632 27631 592 -0.028821652168858236 IPDKFVVGY 9 Unmodified _IPDKFVVGY_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.286865234375 2 519.286943 1036.55933 0.092141 4.7848E-05 0.61933 0.00032161 0.71147 0.00036946 519.2872207536798 54.935 0.4211 54.457 54.25 54.671 -0.47798 76 20 5 0 0 0 0.032796 2 29711 29711;29812 53.833 17.789 1 136180000 23474 7379 15962 16261 27633;27634 27633 0.04251528591407805 IPDKFVVGY 9 Unmodified _IPDKFVVGY_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2871704101562 2 519.286943 1036.55933 0.237 0.00012307 0.45614 0.00023687 0.69314 0.00035994 519.2872587175145 54.591 0.42708 54.524 54.338 54.765 -0.066936 44 19 3 0 0 0 0.040683 1 29701 29701 49.554 20.473 1 19199000 23475 7379 15962 16261 27635 27635 0.04251528591407805 IPDKFVVGY 9 Unmodified _IPDKFVVGY_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2871704101562 2 519.286943 1036.55933 1.1768 0.00061109 -0.24071 -0.000125 0.93608 0.0004861 519.28676233474 61.033 0.72966 54.885 54.63 55.359 -6.1478 108 37 4 0 0 0 0.040683 3 39298 39177;39298;39432 49.554 21.067 1 719420000 23476 7379 15962 16261 27636;27637;27638 27637 0.04251528591407805 IPDLLVKCI 9 Unmodified _IPDLLVKCI_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3063659667969 2 507.306821 1012.59909 NaN NaN NaN NaN NaN NaN NaN 76.918 1 76.438 75.938 76.938 -0.47945 0 0 0 0.76439 1 42112 42112 7.2892 2.5332 1 23477 4688 15963 16262 27639 27639 0.09329332270431223 IPDNVLGIVY 10 Unmodified _IPDNVLGIVY_ 0 0 0 ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7 ENSG00000170537|ENST00000304381|TMC7 ENSG00000170537|ENST00000304381|TMC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8126220703125 2 551.810782 1101.60701 0.57092 0.00031504 1.212 0.00066881 1.7829 0.00098385 551.8113915000504 87.18 0.33992 86.676 86.493 86.833 -0.50423 31 13 3 0 0 0 0.38092 2 47665 47665;47760 22.736 8.8302 1 1281200 23478 7999 15964 16263 27640;27641 27640 0.06027182791558516 IPDPERVFY 9 Unmodified _IPDPERVFY_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2932739257812 2 568.292756 1134.57096 0.49308 0.00028021 1.2058 0.00068522 1.6988 0.00096543 568.2929383515907 57.993 0.26976 57.504 57.369 57.639 -0.48974 20 12 2 0 0 0 0.42 1 31542 31542 16.149 6.0752 1 1882900 23479 5970 15965 16264 27642 27642 0.009057256147116277 IPDPSPNMHM 10 Unmodified _IPDPSPNMHM_ 0 0 0 ENST00000361193.7_2_17:78226975-78227197:+|nuORF ENST00000361193.7_2_17:78226975-78227197:+|nuORF ENST00000361193.7_2_17:78226975-78227197:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7911987304688 2 569.754627 1137.4947 0.50196 0.00028599 -2.6067 -0.0014852 -2.1048 -0.0011992 569.7530596569587 52.826 0.31772 52.826 52.702 53.02 0 39 14 4 0 0 0 0.23896 1 29240 29240 3.5965 0.70727 1 4584100 23480 12177 15966 16265 27643 27643 -0.06854737548565026 IPDPVPCHF 9 Unmodified _IPDPVPCHF_ 0 0 0 REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF REV__ENST00000302017.3_1_7:149462430-149462847:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7501831054688 2 512.74967 1023.48479 0.38656 0.00019821 -1.1724 -0.00060114 -0.78581 -0.00040293 512.7488577148796 52.815 0.36451 52.815 52.617 52.982 0 43 16 3 0 0 0 0.30562 1 29301 29301 16.942 2.3606 1 14316000 + 23481 25326 15967 16266 27644 27644 -0.02601557491652784 IPDQKYVTL 9 Unmodified _IPDQKYVTL_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8036499023438 2 538.802957 1075.59136 NaN NaN NaN NaN NaN NaN NaN 47.603 1 47.25 46.75 47.75 -0.3526 0 0 0 0.28328 1 25522 25522 26.021 2.0001 1 23482 1711 15968 16267 27645 27645 0.05658896274530889 IPDQKYVTL 9 Unmodified _IPDQKYVTL_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MSMS AL20221201_MKP_PDAC_01 4 538.8032836914062 2 538.802957 1075.59136 NaN NaN NaN NaN NaN NaN NaN 53.315 1 47.511 47.011 48.011 -5.8042 0 0 0 0.037345 1 33680 33680 63.227 7.7248 1 23483 1711 15968 16267 27646 27646 0.05658896274530889 IPDQSFDQL 9 Unmodified _IPDQSFDQL_ 0 0 0 ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2804565429688 2 531.758746 1061.50294 0.58961 0.00031353 -0.87975 -0.00046781 -0.29014 -0.00015428 531.7586662014422 38.406 0.27563 38.406 38.344 38.62 0 26 17 2 0 0 0 0.16785 1 20523 20523 11.64 0 1 5801900 23484 3978 15969 16268 27647 27647 -0.025351440359372646 IPDSHEITL 9 Unmodified _IPDSHEITL_ 0 0 0 ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 ENST00000511906.5_1_5:37379391-37721408:+|nuORF ENST00000511906.5_1_5:37379391-37721408:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7700805664062 2 512.769114 1023.52368 0.28482 0.00014604 1.4343 0.00073545 1.7191 0.0008815 512.7697156141959 46.83 0.37608 46.83 46.565 46.941 0 29 17 2 0 0 0 0.05447 1 25626 25626 43.858 11.553 1 5093300 23485 1337 15970 16269 27648 27648 0.01285446343717922 IPDSVSIQY 9 Unmodified _IPDSVSIQY_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2638854980469 2 511.263665 1020.51278 0.93086 0.00047591 -0.070598 -3.6094E-05 0.86026 0.00043982 511.26342840427566 54.682 0.43198 54.682 54.398 54.83 0 47 18 3 0 0 0 0.026094 2 30390 30287;30390 57.471 16.695 1 9022700 23486 9200 15971 16270 27649;27650 27650 0.003340439694397901 IPDSVSIQY 9 Unmodified _IPDSVSIQY_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2635192871094 2 511.263665 1020.51278 0.18669 9.5446E-05 -0.29949 -0.00015312 -0.1128 -5.767E-05 511.26330627253276 55.308 0.2762 54.83 54.65 54.926 -0.47798 20 12 2 0 0 0 0.14602 1 29993 29993 28.487 3.0875 1 2014500 23487 9200 15971 16270 27651 27651 0.003340439694397901 IPDSVSIQY 9 Unmodified _IPDSVSIQY_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MSMS AL20221201_MKP_PDAC_01 4 511.2630920410156 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 62.878 1 56.703 56.203 57.203 -6.1757 0 0 0 0.025979 1 40598 40598 71.134 31.176 1 23488 9200 15971 16270 27652 27652 0.003340439694397901 IPDSVSIQY 9 Unmodified _IPDSVSIQY_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MSMS AL20221201_MKP_PDAC_01 4 511.2637939453125 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 63.069 1 56.893 56.393 57.393 -6.1757 0 0 0 0.025979 1 40736 40736 71.134 31.176 1 23489 9200 15971 16270 27653 27653 0.003340439694397901 IPDVDHVTVV 10 Unmodified _IPDVDHVTVV_ 0 0 0 REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2936401367188 2 547.298039 1092.58152 0.2524 0.00013814 -2.1076 -0.0011535 -1.8552 -0.0010154 547.2975363147251 39.932 0.578 39.932 39.553 40.131 0 71 28 4 0 0 0 0.18021 1 21353 21353 36.127 10.728 1 13904000 + 23490 27090 15972 16271 27654 27654 0.0389370826915183 IPDVYKYEP 9 Unmodified _IPDVYKYEP_ 0 0 0 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.286865234375 2 562.28714 1122.55973 0.67829 0.00038139 -0.84242 -0.00047368 -0.16413 -9.2286E-05 562.2867807395187 85.176 0.62897 84.675 84.322 84.951 -0.5015 61 40 2 0 0 0 0.5029 1 46550 46550 7.2892 0 1 2340900 + 23491 21410 15973 16272 27655 27655 0.0033490352057015116 IPDYTRESY 9 Unmodified _IPDYTRESY_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2691040039062 2 572.269478 1142.5244 -0.34073 -0.00019499 -0.54258 -0.0003105 -0.88331 -0.00050549 572.2694147467492 34.049 0.19719 34.049 33.926 34.123 0 19 9 3 0 0 0 0.060956 1 17897 17897 53.833 29.159 1 5861400 23492 10423 15974 16273 27656 27656 -0.04115759007231645 IPDYTRESY 9 Unmodified _IPDYTRESY_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2703247070312 2 572.269478 1142.5244 0.99067 0.00056693 0.82609 0.00047275 1.8168 0.0010397 572.2700357743867 39.195 0.25874 34.744 34.599 34.858 -4.4509 25 16 2 0 0 0 0.022461 1 23231 23231 75.761 42.975 1 12796000 23493 10423 15974 16273 27657 27657 -0.04115759007231645 IPEDVSGLVSL 11 Unmodified _IPEDVSGLVSL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.812744140625 2 564.810979 1127.6074 NaN NaN NaN NaN NaN NaN NaN 78.346 1 78.346 77.846 78.846 0 0 0 0 0.93224 1 43540 43540 5.7319 0.97584 1 23494 2544 15975 16274 27658 27658 0.04870557720778379 IPEDVSGLVSL 11 Unmodified _IPEDVSGLVSL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MSMS AL20221201_MKP_PDAC_01 4 564.8128051757812 2 564.810979 1127.6074 NaN NaN NaN NaN NaN NaN NaN 86.54 1 80.364 79.864 80.864 -6.1757 0 0 0 0.21937 1 57051 57051 38.176 13.185 1 23495 2544 15975 16274 27659 27659 0.04870557720778379 IPEEDAGKLY 10 Unmodified _IPEEDAGKLY_ 0 0 0 ENST00000472392.1_1_3:100058773-100064548:+|nuORF;ENST00000478856.5_1_3:100053614-100067682:+|nuORF;ENST00000465368.5_1_3:100053614-100064548:+|nuORF;ENSG00000114021|ENST00000394140|NIT2 ENST00000472392.1_1_3:100058773-100064548:+|nuORF ENST00000472392.1_1_3:100058773-100064548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7832641601562 2 567.787504 1133.56045 0.27719 0.00015739 -0.20208 -0.00011474 0.075116 4.265E-05 567.7871195922164 37.608 0.40149 37.608 37.444 37.846 0 65 20 4 0 0 0 0.011612 2 19979 19979;20097 107.1 50.923 1 8205500 23496 13902 15976 16275 27660;27661 27660 -0.000983018303713834 IPEEDAGKLY 10 Unmodified _IPEEDAGKLY_ 0 0 0 ENST00000472392.1_1_3:100058773-100064548:+|nuORF;ENST00000478856.5_1_3:100053614-100067682:+|nuORF;ENST00000465368.5_1_3:100053614-100064548:+|nuORF;ENSG00000114021|ENST00000394140|NIT2 ENST00000472392.1_1_3:100058773-100064548:+|nuORF ENST00000472392.1_1_3:100058773-100064548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7892456054688 2 567.787504 1133.56045 0.8321 0.00047245 0.67051 0.0003807 1.5026 0.00085316 567.7877836689538 43.467 0.40211 38.702 38.565 38.967 -4.7648 46 25 2 0 0 0 0.011612 2 26495 26361;26495 107.1 47.026 1 20796000 23497 13902 15976 16275 27662;27663 27663 -0.000983018303713834 IPEEDDEML 9 Unmodified _IPEEDDEML_ 0 0 0 REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7352294921875 2 545.73408 1089.45361 0.16353 8.9246E-05 1.3254 0.00072332 1.4889 0.00081256 545.7349633157241 62.253 0.27838 62.253 62.122 62.4 0 31 18 2 0 0 0 0.4887 1 34703 34703 7.9102 2.6795 1 11577000 + 23498 18208 15977 16276 27664 27664 -0.08754220107061883 IPEEEFIF 8 Unmodified _IPEEEFIF_ 0 0 0 REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF REV__ENST00000487639.1_1_2:113588742-113591137:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2572631835938 2 512.255308 1022.49606 0.26873 0.00013766 0.13229 6.7764E-05 0.40101 0.00020542 512.255574087749 89.321 0.30383 89.321 89.167 89.471 0 30 14 3 0 0 0 0.80143 1 49395 49395 5.7604 1.816 1 1006900 + 23499 19500 15978 16277 27665 27665 -0.014284569165170069 IPEEESLQRAW 11 Unmodified _IPEEESLQRAW_ 0 0 0 nc|ENSG00000188747|Q86UR1-3|NOXA1;ENSG00000188747|ENST00000683555|NOXA1;nc|ENSG00000188747|Q86UR1-2|NOXA1 nc|ENSG00000188747|Q86UR1-3|NOXA1 nc|ENSG00000188747|Q86UR1-3|NOXA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.3397827148438 2 679.340966 1356.66738 -0.020747 -1.4094E-05 -2.0476 -0.001391 -2.0683 -0.0014051 679.3390151572686 86.115 0.35556 86.115 85.913 86.269 0 33 17 2 0 0 0 0.6747 1 47747 47747 6.6304 0.43853 1 545620 23500 9691 15979 16278 27666 27666 0.003312483840090863 IPEEILGKITL 11 Unmodified _IPEEILGKITL_ 0 0 0 ENST00000582377.1_1_17:11998936-12013832:+|nuORF;ENST00000602537.5_1_17:11984679-12043167:+|nuORF;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000582377.1_1_17:11998936-12013832:+|nuORF ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.3724975585938 2 613.373746 1224.73294 1.0202 0.00062574 0.022778 1.3971E-05 1.0429 0.00063971 613.3732458313351 79.495 0.3214 79.006 78.796 79.117 -0.48932 22 13 3 0 0 0 0.0012693 2 43553 43546;43553 87.123 58.629 1 1887000 23501 909 15980 16279 27667;27668 27668 0.1295626957701188 IPEEILGKITL 11 Unmodified _IPEEILGKITL_ 0 0 0 ENST00000582377.1_1_17:11998936-12013832:+|nuORF;ENST00000602537.5_1_17:11984679-12043167:+|nuORF;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000582377.1_1_17:11998936-12013832:+|nuORF ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3739013671875 2 613.373746 1224.73294 0.66255 0.00040639 0.37037 0.00022717 1.0329 0.00063356 613.3737124144628 78.886 0.27071 78.941 78.809 79.079 0.054977 25 10 3 0 0 0 7.5345E-05 1 43572 43572 90.964 56.032 1 4409200 23502 909 15980 16279 27669 27669 0.1295626957701188 IPEEILGKITL 11 Unmodified _IPEEILGKITL_ 0 0 0 ENST00000582377.1_1_17:11998936-12013832:+|nuORF;ENST00000602537.5_1_17:11984679-12043167:+|nuORF;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000582377.1_1_17:11998936-12013832:+|nuORF ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3743896484375 2 613.373746 1224.73294 0.75499 0.00046309 0.40606 0.00024907 1.1611 0.00071216 613.3740231018407 93.73 0.35355 87.554 87.364 87.718 -6.1757 51 20 3 0 0 0 8.113E-09 2 62008 62008;62153 129.39 70.02 1 29695000 23503 909 15980 16279 27670;27671 27670 0.1295626957701188 IPEEIYWGF 9 Unmodified _IPEEIYWGF_ 0 0 0 ENSG00000157551|ENST00000398938|KCNJ15 ENSG00000157551|ENST00000398938|KCNJ15 ENSG00000157551|ENST00000398938|KCNJ15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2811279296875 2 577.281857 1152.54916 NaN NaN NaN NaN NaN NaN NaN 33.198 1 33.198 32.698 33.698 0 0 0 0 0.096036 1 17390 17390 44.407 6.433 1 23504 6527 15981 16280 27672 27672 -0.021010791338767376 IPEEIYWGF 9 Unmodified _IPEEIYWGF_ 0 0 0 ENSG00000157551|ENST00000398938|KCNJ15 ENSG00000157551|ENST00000398938|KCNJ15 ENSG00000157551|ENST00000398938|KCNJ15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2811279296875 2 577.281857 1152.54916 NaN NaN NaN NaN NaN NaN NaN 33.354 1 33.195 32.695 33.695 -0.15918 0 0 0 0.33856 1 17395 17395 23.148 9.2424 1 23505 6527 15981 16280 27673 27673 -0.021010791338767376 IPEELEFQY 9 Unmodified _IPEELEFQY_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2817993164062 2 584.282054 1166.54956 0.090384 5.2809E-05 0.8007 0.00046783 0.89108 0.00052064 584.2824466953153 69.747 0.52483 69.747 69.444 69.969 0 74 25 4 0 0 0 0.11784 2 38944 38833;38944 42.095 30.454 1 14419000 23506 6727 15982 16281 27674;27675 27675 -0.027057042046635615 IPEELEFQY 9 Unmodified _IPEELEFQY_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2822875976562 2 584.282054 1166.54956 0.79463 0.00046429 -0.84539 -0.00049395 -0.050759 -2.9658E-05 584.2811864522091 77.918 0.47566 71.742 71.479 71.955 -6.1757 63 26 3 0 0 0 0.34134 1 50918 50918 21.747 6.9084 1 66267000 23507 6727 15982 16281 27676 27676 -0.027057042046635615 IPEEQRAQL 9 Unmodified _IPEEQRAQL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2936401367188 2 542.293288 1082.57202 -0.40986 -0.00022227 0.52448 0.00028442 0.11462 6.2157E-05 542.2936235020369 28.758 0.30182 28.758 28.641 28.943 0 22 14 2 0 0 0 0.022193 1 14861 14861 61.357 21.4 1 3523300 23508 16412 15983 16282 27677 27677 0.03403939983604687 IPEEQRAQL 9 Unmodified _IPEEQRAQL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2944946289062 2 542.293288 1082.57202 0.48393 0.00026243 0.81047 0.00043951 1.2944 0.00070195 542.2938220985408 32.77 0.34606 28.914 28.715 29.061 -3.8562 33 18 2 0 0 0 0.011968 1 18662 18662 74.929 13.572 1 19164000 23509 16412 15983 16282 27678 27678 0.03403939983604687 IPEESQLVF 9 Unmodified _IPEESQLVF_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2797241210938 2 531.279315 1060.54408 0.46702 0.00024812 -0.41658 -0.00022132 0.050441 2.6798E-05 531.2794638886354 68.691 0.78033 68.691 68.266 69.046 0 86 34 4 0 0 0 0.019303 2 38286 38185;38286 64.236 2.8788 1 5403800 23510 3059 15984 16283 27679;27680 27680 0.01622617003522464 IPEESQLVF 9 Unmodified _IPEESQLVF_ 0 0 0 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 ENSG00000114767|ENST00000232888|RRP9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.279315 1060.54408 0.044641 2.3717E-05 -2.7465 -0.0014592 -2.7019 -0.0014354 531.7784211085602 69.17 0.43353 68.69 68.465 68.899 -0.48071 -0.00084046 -0.0022224 NaN 64.236 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1356600 23511 3059 15984 16283 0.01622617003522464 IPEFWLPVF 9 Unmodified _IPEFWLPVF_ 0 0 0 ENST00000550917.1_1_12:32879649-32880297:-|nuORF ENST00000550917.1_1_12:32879649-32880297:-|nuORF ENST00000550917.1_1_12:32879649-32880297:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8375854492188 2 574.312961 1146.61137 0.9938 0.00057075 -2.763 -0.0015868 -1.7692 -0.0010161 574.3112541100113 42.888 0.1305 42.888 42.816 42.947 0 13 6 3 0 0 0 0.203 1 23214 23214 2.3027 0 1 1711900 23512 15170 15985 16284 27681 27681 0.04392692005126264 IPEGEEAIT 9 Unmodified _IPEGEEAIT_ 0 0 0 ENSG00000131126|ENST00000598265|TEX101;nc|ENSG00000131126|Q9BY14-2|TEX101 ENSG00000131126|ENST00000598265|TEX101 ENSG00000131126|ENST00000598265|TEX101 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7640380859375 2 479.740022 957.465492 0.92016 0.00044144 0.15417 7.3961E-05 1.0743 0.0005154 479.74007877985514 46.151 0.43056 46.151 45.939 46.369 0 49 20 3 0 0 0 0.15672 1 25128 25128 14.838 0 1 13485000 23513 4301 15986 16285 27682 27682 -0.014942353015612753 IPEGEILVITY 11 Unmodified _IPEGEILVITY_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8500366210938 2 623.850104 1245.68566 0.27568 0.00017198 0.77336 0.00048246 1.049 0.00065444 623.850510340958 85.81 0.36456 85.81 85.631 85.995 0 26 15 2 0 0 0 0.67477 2 47599 47498;47599 12.241 7.8982 1 634320 23514 546 15987 16286 27683;27684 27684 0.07263990306023516 IPEGEILVITY 11 Unmodified _IPEGEILVITY_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.8494262695312 2 623.850104 1245.68566 0.41399 0.00025827 -0.28503 -0.00017782 0.12896 8.045E-05 623.8504238582482 86.339 0.47392 85.836 85.57 86.044 -0.50318 47 19 3 0 0 0 0.57006 2 47279 47174;47279 21.537 17.208 1 1444500 23515 546 15987 16286 27685;27686 27686 0.07263990306023516 IPEGEILVITY 11 Unmodified _IPEGEILVITY_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8516845703125 2 623.850104 1245.68566 1.1037 0.00068853 0.17441 0.0001088 1.2781 0.00079734 623.8501982296812 96.664 0.74133 90.488 90.104 90.845 -6.1757 151 43 5 0 0 0 0.02135 4 63855 63855;63978;64102;64223 81.89 36.191 1 148880000 23516 546 15987 16286 27687;27688;27689;27690 27687 0.07263990306023516 IPEGKIMNNTY 11 Oxidation (M) _IPEGKIM(Oxidation (M))NNTY_ IPEGKIM(1)NNTY IPEGKIM(65)NNTY 0 0 1 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3195190429688 2 648.318645 1294.62274 1.326 0.00085969 0.016535 1.072E-05 1.3426 0.00087041 648.3188077664852 33.879 0.55847 29.893 29.507 30.065 -3.9853 45 30 3 0 0 0 0.012228 1 19349 19349 65.474 31.072 1 6951000 23517 1070 15988 16287 27691 27691 176 -0.012788987536850982 IPEGKIMNNTY 11 Unmodified _IPEGKIMNNTY_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.3206176757812 2 640.321188 1278.62782 0.44439 0.00028455 0.34918 0.00022359 0.79357 0.00050814 640.3213363178155 44.415 0.28597 39.563 39.415 39.701 -4.852 40 20 3 0 0 0 3.9096E-06 1 27069 27069 115.06 69.359 1 19200000 23518 1070 15988 16288 27692 27692 -0.0003459489107626723 IPEGTILTM 9 Oxidation (M) _IPEGTILTM(Oxidation (M))_ IPEGTILTM(1) IPEGTILTM(67) 0 0 1 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7637634277344 2 495.762443 989.510333 0.82436 0.00040869 2.481 0.00123 3.3053 0.0016387 495.76360429231624 50.692 0.60675 50.278 49.95 50.557 -0.41351 69 29 3 0 0 0 0.016184 1 27302 27302 67.344 6.9543 1 5717900 23519 1651 15989 16289 27693 27693 279 0.015158722401224622 IPEGTILTM 9 Oxidation (M) _IPEGTILTM(Oxidation (M))_ IPEGTILTM(1) IPEGTILTM(67) 0 0 1 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7626647949219 2 495.762443 989.510333 1.3305 0.00065962 0.11939 5.919E-05 1.4499 0.00071881 495.76252985807184 58.384 0.48981 52.309 52.145 52.635 -6.0745 45 26 2 0 0 0 0.016184 2 37346 37346;37483 67.344 6.9543 1 14928000 23520 1651 15989 16289 27694;27695 27694 279 0.015158722401224622 IPEGTILTM 9 Unmodified _IPEGTILTM_ 0 0 0 ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7650451660156 2 487.764986 973.515419 0.45055 0.00021976 0.24779 0.00012087 0.69835 0.00034063 487.76523838281 76.471 0.44008 70.295 70.201 70.641 -6.1757 38 23 2 0 0 0 0.023164 1 50133 50133 60.39 6.814 1 14997000 23521 1651 15989 16290 27696 27696 0.027601761027312932 IPEHLTATL 9 Unmodified _IPEHLTATL_ 0 0 0 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 REV__nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7816467285156 2 497.782025 993.549496 0.98269 0.00048917 0.4774 0.00023764 1.4601 0.00072681 497.78201902778574 90.41 0.5876 84.234 83.918 84.505 -6.1757 59 34 2 0 0 0 0.14602 2 59640 59640;59797 28.487 28.487 1 19352000 + 23522 21994 15990 16291 27697;27698 27697 0.052463405860066814 IPEHWHYISF 10 Unmodified _IPEHWHYISF_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.5523681640625 3 443.552262 1327.63496 0.6068 0.00026915 0.34254 0.00015193 0.94934 0.00042108 443.88576767383967 59.404 0.28062 59.351 59.273 59.554 -0.053059 29 14 3 0 0 0 0.52888 1 32404 32404 12.873 8.4665 1 6200100 23523 2527 15991 16292 27699 27699 -0.015754942283592754 IPEIPQRSA 9 Unmodified _IPEIPQRSA_ 0 0 0 ENST00000372189.7_1_9:134473602-134497247:-|nuORF;ENST00000414781.1_1_9:134473602-134479439:-|nuORF ENST00000372189.7_1_9:134473602-134497247:-|nuORF ENST00000372189.7_1_9:134473602-134497247:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.7851867675781 2 505.785099 1009.55564 NaN NaN NaN NaN NaN NaN NaN 39.31 1 34.859 34.359 35.359 -4.4509 0 0 0 0.10759 1 23318 23318 41.84 0 1 23524 12375 15992 16293 27700 27700 0.051248588175326404 IPEKTLKDF 9 Unmodified _IPEKTLKDF_ 0 0 0 REV__ENSG00000136381|ENST00000258886|IREB2 REV__ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.318359375 2 545.810782 1089.60701 0.58088 0.00031705 1.3618 0.00074326 1.9426 0.0010603 545.811377423129 81.423 0.46632 80.931 80.7 81.166 -0.49247 82 20 5 0 0 0 0.44883 1 44503 44503 14.838 4.0143 1 15161000 + 23525 20159 15993 16294 27701 27701 0.06579182791574567 IPEKVTPMA 9 Unmodified _IPEKVTPMA_ 0 0 0 ENSG00000104112|ENST00000220478|SCG3 ENSG00000104112|ENST00000220478|SCG3 ENSG00000104112|ENST00000220478|SCG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2733154296875 2 493.272978 984.531403 -0.13925 -6.8689E-05 0.96065 0.00047386 0.8214 0.00040517 493.27308300954644 41.886 0.47937 41.886 41.626 42.105 0 58 24 3 0 0 0 0.15471 1 22664 22664 27.629 2.2295 1 11960000 23526 2178 15994 16295 27702 27702 0.03851882339631629 IPELSFFLC 9 Unmodified _IPELSFFLC_ 0 0 0 ENST00000494909.5_1_2:114398284-114398608:+|nuORF ENST00000494909.5_1_2:114398284-114398608:+|nuORF ENST00000494909.5_1_2:114398284-114398608:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.8086547851562 2 534.775354 1067.53615 1.0935 0.00058477 -0.37473 -0.0002004 0.71876 0.00038438 534.7754239859057 100.37 0.11213 94.192 94.103 94.215 -6.1757 15 6 3 0 0 0 0.16785 1 67018 67018 23.148 5.0134 1 109910000 23527 14341 15995 16296 27703 27703 0.00508766482403189 IPELYRRL 8 Unmodified _IPELYRRL_ 0 0 0 ENSG00000127249|ENST00000342695|ATP13A4;nc|ENSG00000127249|Q4VNC1-4|ATP13A4 ENSG00000127249|ENST00000342695|ATP13A4 ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.8822326660156 3 353.881831 1058.62366 -0.033961 -1.2018E-05 0.85635 0.00030305 0.82239 0.00029103 353.88193583573667 38.76 0.18642 38.473 38.398 38.585 -0.28687 17 8 3 0 0 0 0.7643 1 20438 20438 11.495 2.5185 1 2122900 23528 3994 15996 16297 27704 27704 0.09669728468179528 IPEMWMGKSY 10 Unmodified _IPEMWMGKSY_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8226318359375 2 621.288302 1240.56205 0.18396 0.00011429 1.4068 0.00087406 1.5908 0.00098835 621.7909022470939 66.512 0.10397 66.029 65.964 66.068 -0.48323 6 4 2 0 0 0 0.23566 1 36320 36320 7.2892 0 1 579610 23529 3407 15997 16298 27705 27705 -0.048607073375933396 IPEPEAAVL 9 Unmodified _IPEPEAAVL_ 0 0 0 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7635192871094 2 469.7633 937.512048 0.76944 0.00036146 0.14251 6.6945E-05 0.91195 0.0004284 469.7631874514231 60.108 0.33671 60.108 59.943 60.279 0 30 14 3 0 0 0 0.095405 1 33498 33498 34.102 8.7031 1 2464400 23530 1937 15998 16299 27706 27706 0.0407924932038668 IPEPHTQARVY 11 Unmodified _IPEPHTQARVY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.5667419433594 3 437.566571 1309.67788 -0.55214 -0.0002416 0.40032 0.00017517 -0.15182 -6.643E-05 437.56674442457836 27.803 0.30692 27.803 27.638 27.945 0 26 14 2 0 0 0 0.34849 1 14306 14306 24.229 14.985 1 4378100 23531 9384 15999 16300 27707 27707 0.035432758290880884 IPEPHTQARVY 11 Unmodified _IPEPHTQARVY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.5686340332031 3 437.566571 1309.67788 0.50226 0.00021977 0.57309 0.00025076 1.0753 0.00047054 437.90127081286994 27.727 0.25122 27.681 27.546 27.797 -0.046408 25 11 4 0 0 0 0.25257 1 14302 14302 29.291 23.057 1 7878900 23532 9384 15999 16300 27708 27708 0.035432758290880884 IPEPHTQARVY 11 Unmodified _IPEPHTQARVY_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MSMS AL20221201_MKP_PDAC_01 4 437.5671997070312 3 437.566571 1309.67788 NaN NaN NaN NaN NaN NaN NaN 31.572 1 27.876 27.376 28.376 -3.6958 0 0 0 0.53265 1 17893 17893 23.34 11.822 1 23533 9384 15999 16300 27709 27709 0.035432758290880884 IPEPIDPLF 9 Unmodified _IPEPIDPLF_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7874145507812 2 520.786776 1039.559 0.38936 0.00020277 0.83337 0.00043401 1.2227 0.00063678 520.7870097593723 88.539 0.51566 88.539 88.264 88.78 0 61 26 3 0 0 0 0.042911 1 49020 49020 48.346 6.2513 1 1974800 23534 6246;6244;9359;9876 16000 16301 27710 27710 0.04080108871517041 IPEPIDPLF 9 Unmodified _IPEPIDPLF_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000187627|P0DJD0|RGPD1;nc|ENSG00000183054|Q99666-2|RGPD5;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2;ENSG00000153165|ENST00000409886|RGPD3;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000196862|ENST00000408999|RGPD4 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7880249023438 2 520.786776 1039.559 0.36838 0.00019185 1.3056 0.00067993 1.674 0.00087178 520.7874268765026 89.082 0.45522 88.578 88.273 88.729 -0.50423 40 19 3 0 0 0 0.095405 1 48664 48664 34.102 5.6156 1 966460 23535 6246;6244;9359;9876 16000 16301 27711 27711 0.04080108871517041 IPEPVVRIL 9 Unmodified _IPEPVVRIL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;JADE2|p.F357Lfs*34|1|0.26|ENSG00000043143|chr5:134566217-134566217|C/-|frameshift_variant nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3323364257812 2 518.331685 1034.64882 -0.14368 -7.4476E-05 -0.56657 -0.00029367 -0.71025 -0.00036814 518.3315360459198 69.532 0.30728 69.053 68.874 69.182 -0.47903 27 12 3 0 0 0 0.20428 1 37981 37981 22.736 11.912 1 1222200 23536 669 16001 16302 27712 27712 0.1328778327076634 IPEQGEMLTY 10 Unmodified _IPEQGEMLTY_ 0 0 0 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7811889648438 2 590.781364 1179.54818 0.08324 4.9177E-05 -0.58021 -0.00034278 -0.49697 -0.0002936 590.7808393181698 78.143 0.41501 78.143 77.922 78.337 0 53 17 4 0 0 0 0.24625 2 43470 43364;43470 30.637 16.73 1 7200200 + 23537 20086 16002 16303 27713;27714 27714 -0.03441661565057075 IPEQLGRISY 10 Unmodified _IPEQLGRISY_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A;ATP9A|p.Q698Pfs*24|1|0.06|ENSG00000054793|chr20:51622089-51622096|GATGTCTT/-|frameshift_variant ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3251342773438 2 588.324588 1174.63462 0.80499 0.0004736 -2.5724 -0.0015134 -1.7674 -0.0010398 588.8234367006143 50.322 0.28051 49.93 49.753 50.033 -0.3923 20 13 2 0 0 0 0.1379 1 27086 27086 55.503 17.529 1 5406900 23538 765 16003 16304 27715 27715 0.054290860518449335 IPERTVIY 8 Unmodified _IPERTVIY_ 0 0 0 REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF REV__ENST00000491056.5_1_2:113587940-113590763:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2666625976562 2 495.784567 989.554582 -0.45194 -0.00022406 1.1544 0.00057235 0.70249 0.00034828 495.7850679699768 26.842 0.085419 26.842 26.782 26.868 0 5 3 2 0 0 0 8.7369 1 13792 13792 5.2307 0 1 302570 + 23539 27887 16004 16305 27716 27716 0.0593864444861083 IPESAWKH 8 Unmodified _IPESAWKH_ 0 0 0 ENST00000382938.3_1_15:29363239-29394119:+|nuORF ENST00000382938.3_1_15:29363239-29394119:+|nuORF ENST00000382938.3_1_15:29363239-29394119:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2537841796875 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 80.566 1 80.566 80.066 81.066 0 0 0 0 0.97444 1 44733 44733 2.5775 0 1 23540 12635 16005 16306 27717 27717 0.0077291810027873 IPESQFPEF 9 Unmodified _IPESQFPEF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.318359375 2 547.263665 1092.51278 0.6706 0.00036699 -2.0497 -0.0011217 -1.3791 -0.00075472 547.763507371851 81.188 0.14839 80.695 80.666 80.815 -0.49247 16 11 2 0 0 0 0.17275 1 44503 44503 21.747 3.6117 1 1492100 23541 4682 16006 16307 27718 27718 -0.029779560305769337 IPETMYVVEF 10 Unmodified _IPETMYVVEF_ 0 0 0 REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2999267578125 2 614.301933 1226.58931 NaN NaN NaN NaN NaN NaN NaN 61.734 1 61.734 61.234 62.234 0 0 0 0 0.96981 1 34420 34420 3.9444 0 1 + 23542 17960 16007 16308 27719 27719 -0.014919005256160744 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 900.520751953125 1 900.518931 899.511654 0.1276 0.00011491 0.70852 0.00063803 0.83612 0.00075294 900.5193771725593 74.778 0.29931 74.302 74.133 74.432 -0.47588 18 11 2 0 0 0 0.078417 2 40884 40884;40994 38.151 24.643 1 701480 23543 4895 16008 16309 27720;27721 27720 0.05787874391171499 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7628479003906 2 450.763104 899.511654 0.64042 0.00028868 0.022312 1.0058E-05 0.66273 0.00029874 450.76316418627886 74.814 0.34527 74.338 74.087 74.432 -0.47588 22 13 2 0 0 0 0.16776 1 40906 40906 26.341 10.573 1 787360 23544 4895 16008 16309 27722 27722 0.05787874391171499 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 900.5205688476562 1 900.518931 899.511654 0.5565 0.00050114 0.90903 0.0008186 1.4655 0.0013197 900.5198479690838 74.208 0.28894 74.252 74.096 74.385 0.043983 20 12 2 0 0 0 0.013472 1 40888 40888 70.716 32.564 1 2156100 23545 4895 16008 16309 27723 27723 0.05787874391171499 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 900.5180053710938 1 900.518931 899.511654 0.34659 0.00031211 0.39947 0.00035973 0.74606 0.00067185 900.5188411970258 82.118 0.29008 75.942 75.796 76.086 -6.1757 22 15 2 0 0 0 0.0081063 2 53861 53861;54023 93.883 93.883 1 7007800 23546 4895 16008 16309 27724;27725 27724 0.05787874391171499 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.763427734375 2 450.763104 899.511654 0.66182 0.00029832 0.69428 0.00031296 1.3561 0.00061128 450.76308355240394 82.125 0.48497 75.949 75.694 76.179 -6.1757 43 26 2 0 0 0 0.023761 2 53869 53869;53999 59.795 12.874 1 14361000 23547 4895 16008 16309 27726;27727 27726 0.05787874391171499 IPFAAPTAL 9 Unmodified _IPFAAPTAL_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 450.763104 899.511654 0.71274 0.00032128 -0.35094 -0.00015819 0.36181 0.00016309 450.7628531654167 74.232 0.381 74.276 74.028 74.409 0.043983 -0.030778 -0.0001542 NaN 26.341 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1247000 23548 4895 16008 16309 0.05787874391171499 IPFDPKFITY 10 Unmodified _IPFDPKFITY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF;ENST00000597365.1_1_19:39880707-39881561:-|nuORF;ENST00000416728.3_1_19:39880170-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8345336914062 2 620.834257 1239.65396 0.20013 0.00012425 1.3701 0.00085058 1.5702 0.00097483 620.834824334989 76.312 0.38567 75.833 75.617 76.003 -0.47945 43 16 4 0 0 0 0.07026 2 41810 41706;41810 53.317 32.863 1 5986200 23549 16013 16009 16310 27728;27729 27729 0.04372042342720306 IPFDPKFITY 10 Unmodified _IPFDPKFITY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF;ENST00000597365.1_1_19:39880707-39881561:-|nuORF;ENST00000416728.3_1_19:39880170-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8345336914062 2 620.834257 1239.65396 0.42889 0.00026627 0.042797 2.657E-05 0.47169 0.00029284 620.834176853244 75.714 0.49998 75.762 75.537 76.037 0.047943 99 22 6 0 0 0 0.04848 3 41788 41680;41788;41906 59.052 38.599 1 460800000 23550 16013 16009 16310 27730;27731;27732 27731 0.04372042342720306 IPFDPKFITY 10 Unmodified _IPFDPKFITY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF;ENST00000597365.1_1_19:39880707-39881561:-|nuORF;ENST00000416728.3_1_19:39880170-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.83447265625 2 620.834257 1239.65396 0.9075 0.00056341 -0.2894 -0.00017967 0.6181 0.00038374 620.8338552789986 89.662 1.0214 83.486 82.986 84.007 -6.1757 222 56 5 0 0 0 0.015874 5 59030 58909;59030;59154;59274;59395 79.427 54.028 1 701740000 23551 16013 16009 16310 27733;27734;27735;27736;27737 27734 0.04372042342720306 IPFEFPLHL 9 Unmodified _IPFEFPLHL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C;ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7340087890625 2 556.810585 1111.60662 0.56068 0.00031219 -1.6187 -0.00090132 -1.058 -0.00058913 556.8095163304631 98.037 0.16344 97.794 97.727 97.89 -0.24277 9 5 2 0 0 0 0.18482 1 53520 53520 19.439 10.056 1 999570 23552 6526 16010 16311 27738 27738 0.055278078623587135 IPFEFPLHL 9 Unmodified _IPFEFPLHL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C;ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8114013671875 2 556.810585 1111.60662 1.4174 0.0007892 -0.77446 -0.00043123 0.64291 0.00035798 556.8105386373378 100.12 0.44636 93.946 93.755 94.202 -6.1757 56 28 3 0 0 0 0.0083087 2 66959 66959;67000 97.075 58.923 1 336680000 23553 6526 16010 16311 27739;27740 27739 0.055278078623587135 IPFETRQLY 9 Unmodified _IPFETRQLY_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8131713867188 2 583.813856 1165.61316 0.33813 0.0001974 -1.235 -0.000721 -0.89686 -0.0005236 583.8135152928545 53.843 0.2604 53.377 53.246 53.507 -0.46664 25 12 3 0 0 0 0.34134 1 29190 29190 15.248 2.7169 1 1701500 23554 1608 16011 16312 27741 27741 0.03697701023111222 IPFETRQLY 9 Unmodified _IPFETRQLY_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2720947265625 2 583.813856 1165.61316 0.26353 0.00015386 -0.62416 -0.00036439 -0.36062 -0.00021054 584.314188983271 53.425 0.055382 53.361 53.326 53.381 -0.063423 4 2 2 0 0 0 0.18094 1 28980 28980 20.415 3.3016 1 756430 23555 1608 16011 16312 27742 27742 0.03697701023111222 IPFFDNKNEL 10 Unmodified _IPFFDNKNEL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8170166015625 2 618.816596 1235.61864 0.54277 0.00033587 0.91553 0.00056654 1.4583 0.00090242 618.8170806130228 67.124 0.325 67.124 66.992 67.317 0 36 13 4 0 0 0 0.14944 2 37416 37416;37512 53.404 20.618 1 2795100 23556 10367 16012 16313 27743;27744 27743 0.010253798149051363 IPFFDNKNEL 10 Unmodified _IPFFDNKNEL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.81689453125 2 618.816596 1235.61864 0.62143 0.00038455 -0.12685 -7.8496E-05 0.49458 0.00030605 618.8165670932651 67.642 0.50163 67.16 66.889 67.391 -0.48218 76 21 5 0 0 0 0.0095113 2 37008 36899;37008 103.42 59.984 1 35624000 23557 10367 16012 16313 27745;27746 27746 0.010253798149051363 IPFFDNKNEL 10 Unmodified _IPFFDNKNEL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8167724609375 2 618.816596 1235.61864 0.78464 0.00048555 -0.3972 -0.0002458 0.38743 0.00023975 618.8163150779029 67.086 0.35789 67.104 66.939 67.297 0.018028 44 17 3 0 0 0 0.1379 1 36883 36883 55.503 19.376 1 9555700 23558 10367 16012 16313 27747 27747 0.010253798149051363 IPFFDNKNEL 10 Unmodified _IPFFDNKNEL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8173217773438 2 618.816596 1235.61864 0.59019 0.00036522 -0.026099 -1.615E-05 0.56409 0.00034907 618.8167130487147 76.028 0.84507 69.853 69.319 70.164 -6.1757 79 45 2 0 0 0 2.2019E-05 5 49798 49427;49548;49673;49798;49933 143.91 76.071 1 25139000 23559 10367 16012 16313 27748;27749;27750;27751;27752 27751 0.010253798149051363 IPFFDNKNEL 10 Unmodified _IPFFDNKNEL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8176879882812 2 618.816596 1235.61864 0.16107 9.9671E-05 -0.13022 -8.0583E-05 0.030847 1.9089E-05 618.8167215736378 76.65 1.0055 70.474 70.111 71.117 -6.1757 99 55 2 0 0 0 2.7136E-07 4 50072 50072;50193;50314;50431 159.1 96.585 1 29585000 23560 10367 16012 16313 27753;27754;27755;27756 27753 0.010253798149051363 IPFFPPPDLPQ 11 Unmodified _IPFFPPPDLPQ_ 0 0 0 REV__ENST00000349213.7_1_1:235490233-235491210:-|nuORF REV__ENST00000349213.7_1_1:235490233-235491210:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.33740234375 2 634.339707 1266.66486 NaN NaN NaN NaN NaN NaN NaN 90.397 1 84.221 83.721 84.721 -6.1757 0 0 0 0.48869 1 59710 59710 24.991 2.2547 1 + 23561 25775 16013 16314 27757 27757 0.04219444716977705 IPFGITEEAM 10 Oxidation (M) _IPFGITEEAM(Oxidation (M))_ IPFGITEEAM(1) IPFGITEEAM(42) 0 0 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2703247070312 2 562.270632 1122.52671 0.065196 3.6658E-05 1.6928 0.00095183 1.758 0.00098849 562.2720753709233 60.655 0.16073 60.166 60.069 60.23 -0.48932 12 7 2 0 0 0 0.13184 1 33035 33035 42.095 26.247 1 1823500 23562 860 16014 16315 27758 27758 133 -0.029650465937947956 IPFGITEEAM 10 Oxidation (M) _IPFGITEEAM(Oxidation (M))_ 0 0 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 562.270632 1122.52671 0.67578 0.00037997 -0.21497 -0.00012087 0.46081 0.0002591 562.2708312482114 59.973 0.3607 59.973 59.839 60.199 0 -0.096433 -0.0003473 NaN 42.095 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5475300 23563 860 16014 16315 133 -0.029650465937947956 IPFGITEEAMM 11 2 Oxidation (M) _IPFGITEEAM(Oxidation (M))M(Oxidation (M))_ IPFGITEEAM(1)M(1) IPFGITEEAM(46)M(46) 0 0 2 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.788818359375 2 635.788332 1269.56211 0.33214 0.00021117 -0.21329 -0.00013561 0.11885 7.5565E-05 635.7879270503718 59.682 0.32848 59.682 59.51 59.839 0 35 14 3 0 0 0 0.072482 1 33222 33222 46.021 38.111 1 5240400 23564 860 16015 16316 27759 27759 133;134 -0.061887521282869784 IPFGITEEAMM 11 2 Oxidation (M) _IPFGITEEAM(Oxidation (M))M(Oxidation (M))_ IPFGITEEAM(1)M(1) IPFGITEEAM(44)M(44) 0 0 2 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.7880859375 2 635.788332 1269.56211 -0.28415 -0.00018066 0.54727 0.00034795 0.26312 0.00016729 635.788727337806 60.332 0.24168 59.841 59.726 59.968 -0.49079 19 11 2 0 0 0 0.088077 1 32857 32857 43.858 29.952 1 4392200 23565 860 16015 16316 27760 27760 133;134 -0.061887521282869784 IPFGITEEAMM 11 Oxidation (M) _IPFGITEEAM(Oxidation (M))M_ IPFGITEEAM(0.974)M(0.026) IPFGITEEAM(16)M(-16) 0 0 1 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MSMS AL20221201_MKP_PDAC_01 4 627.7899169921875 2 627.790875 1253.5672 NaN NaN NaN NaN NaN NaN NaN 80.315 1 74.139 73.639 74.639 -6.1757 0 0 0 0.031416 1 52690 52690 68.081 52.234 2 23566 860 16015 16317 27761 27761 133;134 -0.049444482656781474 IPFGNNPIFRY 11 Unmodified _IPFGNNPIFRY_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.3538208007812 2 669.35368 1336.69281 0.55396 0.0003708 0.70257 0.00047027 1.2565 0.00084107 669.3540555910799 74.423 0.51343 74.469 74.259 74.773 0.045959 58 22 4 0 0 0 1.3587E-06 2 40971 40971;41077 103.35 85.207 1 18702000 23567 3196 16016 16318 27762;27763 27762 0.03792767697086674 IPFGNNPIFRY 11 Unmodified _IPFGNNPIFRY_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3538208007812 2 669.35368 1336.69281 0.58997 0.0003949 0.16523 0.0001106 0.7552 0.0005055 669.3536630440017 90.116 0.642 83.94 83.615 84.257 -6.1757 94 36 3 0 0 0 1.2358E-44 3 59509 59377;59509;59636 191.38 128.81 1 40579000 23568 3196 16016 16318 27764;27765;27766 27765 0.03792767697086674 IPFHDPTCVY 10 Carbamidomethyl (C) _IPFHDPTC(Carbamidomethyl (C))VY_ IPFHDPTC(1)VY IPFHDPTC(44)VY 0 1 0 ENST00000313182.6_1_15:65899662-65903458:-|nuORF;ENST00000569565.1_1_15:65899662-65903067:-|nuORF;ENST00000567923.1_1_15:65899662-65903535:-|nuORF ENST00000313182.6_1_15:65899662-65903458:-|nuORF ENST00000313182.6_1_15:65899662-65903458:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.790771484375 2 624.789524 1247.56449 0.48219 0.00030127 2.4723 0.0015447 2.9545 0.0018459 624.7913364050645 57.003 0.24549 51.026 50.827 51.073 -5.9769 16 14 2 0 0 0 0.11755 1 36439 36439 43.858 18.459 1 15866000 23569 11710 16017 16319 27767 27767 969 -0.049385356083121223 IPFHFHLVDPF 11 Unmodified _IPFHFHLVDPF_ 0 0 0 REV__ENST00000480552.5_1_7:140156054-140156144:-|nuORF REV__ENST00000480552.5_1_7:140156054-140156144:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.9078979492188 3 456.908157 1367.70264 0.40367 0.00018444 -0.93637 -0.00042784 -0.5327 -0.00024339 456.90758105153867 73.052 0.21661 73.093 72.968 73.184 0.041725 20 10 3 0 0 0 0.71259 1 40243 40243 3.0723 0.22898 1 2923500 + 23570 27676 16018 16320 27768 27768 0.033499557024697424 IPFHFHLVDPF 11 Unmodified _IPFHFHLVDPF_ 0 0 0 REV__ENST00000480552.5_1_7:140156054-140156144:-|nuORF REV__ENST00000480552.5_1_7:140156054-140156144:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 456.908157 1367.70264 0.40367 0.00018444 -0.93637 -0.00042784 -0.5327 -0.00024339 456.90758105153867 73.052 0.21661 73.093 72.968 73.184 0.041725 0 0 NaN 3.0723 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2923500 + 23571 27676 16018 16320 0.033499557024697424 IPFHLTLSL 9 Unmodified _IPFHLTLSL_ 0 0 0 REV__ENST00000501122.2_1_11:65197434-65197494:+|nuORF REV__ENST00000501122.2_1_11:65197434-65197494:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.7286376953125 2 520.810585 1039.60662 0.58413 0.00030422 -1.4816 -0.00077166 -0.89751 -0.00046743 521.3121946590527 66.699 0.36066 60.523 60.197 60.558 -6.1757 24 20 2 0 0 0 0.16229 1 43381 43381 7.9102 0 1 12660000 + 23572 28012 16019 16321 27769 27769 0.08839807862386806 IPFKIPQSFP 10 Unmodified _IPFKIPQSFP_ 0 0 0 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.33935546875 2 587.336967 1172.65938 1.0173 0.0005975 1.6407 0.00096362 2.658 0.0015611 587.3384087293174 101.23 0.061066 95.054 95.018 95.079 -6.1757 5 3 2 0 0 0 0.42068 1 67899 67899 20.454 2.3073 1 14828000 + 23573 29477 16020 16322 27770 27770 0.07995765925170417 IPFLAMMVLDM 11 Unmodified _IPFLAMMVLDM_ 0 0 0 REV__chr12:54282874-54283792|179|76.5|0.0|22.87|+|0|HNRNPA1,HNRNPA1|1 REV__chr12:54282874-54283792|179|76.5|0.0|22.87|+|0|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.8261108398438 2 640.826206 1279.63786 0.26653 0.0001708 -0.51291 -0.00032869 -0.24638 -0.00015789 640.8258125329465 85.96 0.44696 85.457 85.227 85.674 -0.50318 53 17 4 0 0 0 0.67371 2 47097 46992;47097 6.7232 0 1 3271400 + 23574 16777 16021 16323 27771;27772 27772 0.009225535182849853 IPFLAMMVLDM 11 Unmodified _IPFLAMMVLDM_ 0 0 0 REV__chr12:54282874-54283792|179|76.5|0.0|22.87|+|0|HNRNPA1,HNRNPA1|1 REV__chr12:54282874-54283792|179|76.5|0.0|22.87|+|0|HNRNPA1,HNRNPA1|1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 640.826206 1279.63786 -0.0053199 -3.4091E-06 -1.1414 -0.00073144 -1.1467 -0.00073485 640.8249687462073 85.44 0.3119 85.44 85.269 85.581 0 -0.0084932 -0.00060444 NaN 6.7232 22 12 3 NaN NaN NaN NaN 0 NaN NaN 0 367960 + 23575 16777 16021 16323 0.009225535182849853 IPFLKTHF 8 Unmodified _IPFLKTHF_ 0 0 0 REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7399597167969 2 501.792195 1001.56984 1.146 0.00057504 -1.8316 -0.0009191 -0.68566 -0.00034406 501.7896892252583 46.98 0.18272 46.947 46.814 46.996 -0.033417 18 8 3 0 0 0 8.7369 1 25242 25242 6.3541 0.14832 1 2723700 + 23576 26126 16022 16324 27773 27773 0.06911556036459388 IPFNQALVF 9 Unmodified _IPFNQALVF_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20;ENST00000475700.1_1_1:112303610-112303748:+|nuORF ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.795654296875 2 524.794935 1047.57532 0.33946 0.00017814 0.24712 0.00012969 0.58657 0.00030783 524.7948925447804 89.797 0.46219 89.839 89.533 89.995 0.042175 38 16 3 0 0 0 0.013472 2 49874 49874;49972 70.716 38.41 1 18014000 23577 883 16023 16325 27774;27775 27774 0.05343234828274035 IPFNQALVF 9 Unmodified _IPFNQALVF_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20;ENST00000475700.1_1_1:112303610-112303748:+|nuORF ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7948608398438 2 524.794935 1047.57532 1.0714 0.00056227 -0.59509 -0.0003123 0.47632 0.00024997 524.7944942526457 99.442 0.35037 93.266 93.066 93.416 -6.1757 48 22 3 0 0 0 0.2001 1 66296 66296 23.148 9.2424 1 85584000 23578 883 16023 16325 27776 27776 0.05343234828274035 IPFNSTNKY 9 Unmodified _IPFNSTNKY_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.278564453125 2 542.277106 1082.53966 -0.50478 -0.00027373 1.1786 0.00063913 0.67383 0.0003654 542.2778628748642 34.896 0.34204 34.705 34.541 34.883 -0.19131 25 14 2 0 0 0 0.094149 1 18230 18230 34.402 17.289 1 2397200 23579 6989;512;4438 16024 16326 27777 27777 0.0016915258061089844 IPFNSTNKY 9 Unmodified _IPFNSTNKY_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.278076171875 2 542.277106 1082.53966 0.75929 0.00041174 0.14134 7.6645E-05 0.90063 0.00048839 542.2772623387918 39.267 0.47564 34.817 34.616 35.091 -4.4509 42 29 2 0 0 0 0.01958 2 23392 23242;23392 63.961 27.833 1 13390000 23580 6989;512;4438 16024 16326 27778;27779 27779 0.0016915258061089844 IPFPLQDY 8 Unmodified _IPFPLQDY_ 0 0 0 ENST00000330714.7_1_21:42780219-42780591:+|nuORF ENST00000330714.7_1_21:42780219-42780591:+|nuORF ENST00000330714.7_1_21:42780219-42780591:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.2803039550781 2 496.758018 991.501483 1.514 0.00075209 3.6562 0.0018163 5.1702 0.0025684 496.7593410797563 101 0.12087 94.823 94.748 94.869 -6.1757 11 6 3 0 0 0 8.7369 1 67626 67626 24.21 1.7573 1 26930000 23581 11852 16025 16327 27780 27780 0.005392666659417955 IPFPNVLPDF 10 Unmodified _IPFPNVLPDF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8123779296875 2 579.813325 1157.6121 1.6644 0.00096502 -1.8749 -0.0010871 -0.21051 -0.00012205 579.811975666791 100.45 0.19411 100.42 100.32 100.51 -0.036301 20 6 5 0 0 0 0.024351 1 55803 55803 96.285 46.352 1 70470000 23582 4799 16026 16328 27781 27781 0.039594866541847296 IPFPNVLPDF 10 Unmodified _IPFPNVLPDF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3065795898438 2 579.813325 1157.6121 1.1272 0.00065359 -0.48047 -0.00027858 0.64677 0.00037501 579.8129837956486 101.21 0.20478 95.034 94.939 95.144 -6.1757 36 12 4 0 0 0 0.061704 2 67816 67816;67836 74.929 33.089 1 688960000 23583 4799 16026 16328 27782;27783 27782 0.039594866541847296 IPFPNVLPDF 10 Unmodified _IPFPNVLPDF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 579.813325 1157.6121 0.35198 0.00020408 0.038872 2.2539E-05 0.39086 0.00022662 579.8128059570691 100.51 0.087524 100.38 100.32 100.41 -0.13293 -0.020216 0.0020111 NaN 96.285 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1862500 23584 4799 16026 16328 0.039594866541847296 IPFPSGRTNLY 11 Unmodified _IPFPSGRTNLY_ 0 0 0 ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENST00000575282.5_1_17:78185753-78186503:-|nuORF;ENSG00000181523|ENST00000326317|SGSH ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.8372802734375 2 632.837862 1263.66117 0.1307 8.2711E-05 0.0085768 5.4277E-06 0.13928 8.8139E-05 632.8378387266039 55.252 0.29831 55.183 55.019 55.317 -0.068741 37 14 3 0 0 0 0.14513 1 30001 30001 38.615 10.986 1 3239400 23585 8977;15483 16027 16329 27784 27784 0.0398877494315002 IPFRNPNTY 9 Unmodified _IPFRNPNTY_ 0 0 0 ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2913208007812 2 561.290548 1120.56654 0.19625 0.00011015 2.1562 0.0012103 2.3525 0.0013204 561.2915921325573 38.405 0.30896 38.118 37.953 38.262 -0.28687 35 13 4 0 0 0 0.015445 1 20235 20235 68.081 28.123 1 2087600 23586 346 16028 16330 27785 27785 0.011082611918027396 IPFRNPNTY 9 Unmodified _IPFRNPNTY_ 0 0 0 ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.291748046875 2 561.290548 1120.56654 0.46191 0.00025926 0.35392 0.00019865 0.81582 0.00045791 561.2906064430355 38.025 0.2886 38.042 37.902 38.191 0.017036 34 13 3 0 0 0 0.0071894 1 20175 20175 111.29 78.982 1 6160900 23587 346 16028 16330 27786 27786 0.011082611918027396 IPFRNPNTY 9 Unmodified _IPFRNPNTY_ 0 0 0 ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.29150390625 2 561.290548 1120.56654 0.92088 0.00051688 -0.40324 -0.00022633 0.51764 0.00029055 561.290624671607 43.057 0.33737 38.292 38.096 38.433 -4.7648 54 21 3 0 0 0 0.0082475 2 26044 26044;26190 92.653 48.246 1 29766000 23588 346 16028 16330 27787;27788 27787 0.011082611918027396 IPFRPSIQF 9 Unmodified _IPFRPSIQF_ 0 0 0 ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2;ENST00000506628.1_1_5:95242411-95297425:-|nuORF ENSG00000118985|ENST00000237853|ELL2 ENSG00000118985|ENST00000237853|ELL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8150634765625 2 552.813659 1103.61277 0.64887 0.00035871 0.52028 0.00028762 1.1692 0.00064632 552.8140918568682 68.582 0.26495 68.607 68.436 68.701 0.025146 31 12 3 0 0 0 0.0083595 1 37652 37652 106.94 58.594 1 5164300 23589 3406 16029 16331 27789 27789 0.06510326093894037 IPFRRPSTY 9 Unmodified _IPFRRPSTY_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5458374023438 3 379.545219 1135.61383 -0.12198 -4.6298E-05 0.65573 0.00024888 0.53374 0.00020258 379.5455367586928 30.622 0.35023 30.652 30.456 30.806 0.030106 46 15 4 0 0 0 0.36964 1 15965 15965 18.373 9.9288 1 5629200 23590 10851 16030 16332 27790 27790 0.051445404628111646 IPFSGALEL 9 Unmodified _IPFSGALEL_ 0 0 0 ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1 ENST00000462000.1_1_2:174945834-174988397:-|nuORF ENST00000462000.1_1_2:174945834-174988397:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.5245971679688 1 946.52441 945.517133 0.64491 0.00061042 -1.6189 -0.0015323 -0.97399 -0.00092191 946.5224469639364 94.46 0.87265 88.284 87.947 88.82 -6.1757 85 50 2 0 0 0 0.0041763 4 62736 62376;62492;62617;62736 120.45 38.56 1 10193000 23591 5052 16031 16333 27791;27792;27793;27794 27794 0.042195531829861466 IPFSGALEL 9 Unmodified _IPFSGALEL_ 0 0 0 ENST00000462000.1_1_2:174945834-174988397:-|nuORF;ENST00000396387.2_1_22:42503789-42504386:-|nuORF;ENST00000392560.6_1_2:174940156-174989039:-|nuORF;nc|ENSG00000138430|Q9NTK5-2|OLA1;ENSG00000138430|ENST00000284719|OLA1 ENST00000462000.1_1_2:174945834-174988397:-|nuORF ENST00000462000.1_1_2:174945834-174988397:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7654724121094 2 473.765843 945.517133 1.1286 0.00053469 -0.50294 -0.00023827 0.62567 0.00029642 473.76546688562644 94.687 1.0704 88.512 87.749 88.82 -6.1757 110 61 2 0 0 0 0.016184 3 62710 62588;62710;62829 67.344 9.8725 1 12335000 23592 5052 16031 16333 27795;27796;27797 27796 0.042195531829861466 IPFSIIIQF 9 Unmodified _IPFSIIIQF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3199462890625 2 539.320786 1076.62702 0.54629 0.00029462 -0.91851 -0.00049537 -0.37222 -0.00020075 539.3202419161732 101.87 0.15337 95.694 95.644 95.797 -6.1757 14 7 3 0 0 0 0.0090851 1 68379 68379 85.357 7.2073 1 12546000 23593 7210 16032 16334 27798 27798 0.0917697852216861 IPFSSDVTHEM 11 Unmodified _IPFSSDVTHEM_ 0 0 0 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7891845703125 2 631.789721 1261.56489 0.6814 0.0004305 0.34311 0.00021677 1.0245 0.00064728 631.7898584649886 58.321 0.35603 52.247 52.015 52.371 -6.0745 31 18 2 0 0 0 0.018255 1 37322 37322 82.529 44.354 1 23102000 23594 3986 16033 16335 27799 27799 -0.05543160679144421 IPFTGIVGL 9 Unmodified _IPFTGIVGL_ 0 0 0 nc|ENSG00000108523|Q9H6Y7-2|RNF167;ENSG00000108523|ENST00000262482|RNF167;ENST00000575524.1_1_17:4846390-4846588:+|nuORF nc|ENSG00000108523|Q9H6Y7-2|RNF167 nc|ENSG00000108523|Q9H6Y7-2|RNF167 MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.5498657226562 1 916.550231 915.542954 0.98362 0.00090154 -1.6117 -0.0014772 -0.62811 -0.0005757 916.5489465457327 100.17 0.090126 93.994 93.924 94.014 -6.1757 7 4 2 0 0 0 0.0095811 1 66916 66916 81.613 3.6287 1 10073000 23595 2578 16034 16336 27800 27800 0.08180447425286275 IPFTGNVKL 9 Unmodified _IPFTGNVKL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7959594726562 2 494.794935 987.575317 0.87617 0.00043353 -0.23826 -0.00011789 0.63792 0.00031564 494.7948504797017 58.331 0.33526 58.27 58.097 58.432 -0.060719 38 16 3 0 0 0 0.013609 1 31728 31728 70.332 14.155 1 7371200 23596 797 16035 16337 27801 27801 0.08103234828286077 IPFTGNVKL 9 Unmodified _IPFTGNVKL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.795654296875 2 494.794935 987.575317 1.4684 0.00072654 0.92441 0.0004574 2.3928 0.0011839 494.795485173924 64.203 0.60918 58.028 57.841 58.45 -6.1757 57 32 3 0 0 0 0.021948 1 41579 41579 61.602 1.2124 1 19874000 23597 797 16035 16337 27802 27802 0.08103234828286077 IPFTGNVKL 9 Unmodified _IPFTGNVKL_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 494.794935 987.575317 1.4684 0.00072654 0.92441 0.0004574 2.3928 0.0011839 494.795485173924 64.203 0.60918 58.028 57.841 58.45 -6.1757 -0.12134 0.00069022 NaN 70.332 57 32 3 NaN NaN NaN NaN 0 NaN NaN 0 19874000 23598 797 16035 16337 0.08103234828286077 IPFTSTPLY 9 Unmodified _IPFTSTPLY_ 0 0 0 ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.779296875 2 519.778951 1037.54335 0.4225 0.00021961 -0.14251 -7.4074E-05 0.27999 0.00014553 519.778834650607 84.498 0.48054 83.999 83.797 84.278 -0.49962 81 21 5 0 0 0 0.10925 2 46189 46189;46287 32.117 7.4431 1 26671000 23599 13137 16036 16338 27803;27804 27803 0.026078223544800494 IPFTSTPLY 9 Unmodified _IPFTSTPLY_ 0 0 0 ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7797241210938 2 519.778951 1037.54335 -0.1324 -6.8818E-05 0.9098 0.0004729 0.77741 0.00040408 519.779415859063 83.877 0.26502 83.94 83.782 84.047 0.063171 17 10 2 0 0 0 0.18465 1 46421 46421 24.674 3.8027 1 20593000 23600 13137 16036 16338 27805 27805 0.026078223544800494 IPFTSTPLY 9 Unmodified _IPFTSTPLY_ 0 0 0 ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7793579101562 2 519.778951 1037.54335 0.67243 0.00034951 -0.27494 -0.00014291 0.39749 0.00020661 519.778843847042 92.688 1.1726 86.513 86.02 87.193 -6.1757 223 77 4 0 0 0 0.10925 5 61278 61154;61278;61401;61535;61671 32.117 7.4431 1 201550000 23601 13137 16036 16338 27806;27807;27808;27809;27810 27807 0.026078223544800494 IPFTSTPLY 9 Unmodified _IPFTSTPLY_ 0 0 0 ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF ENST00000423663.5_1_2:34947381-34947477:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.778951 1037.54335 0.3635 0.00018894 0.17597 9.1465E-05 0.53947 0.00028041 519.7790609710534 84.016 0.34885 84.016 83.816 84.165 0 0.031112 0.00010603 NaN 32.117 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1616000 23602 13137 16036 16338 0.026078223544800494 IPFVRQQVY 9 Unmodified _IPFVRQQVY_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA;ENST00000471743.1_1_2:26435372-26437931:-|nuORF;ENST00000540341.1_1_12:8787398-8787947:+|nuORF ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3246459960938 2 575.324391 1148.63423 0.75031 0.00043167 -0.42755 -0.00024598 0.32276 0.00018569 575.323934225157 50.789 0.45174 50.735 50.49 50.942 -0.053871 58 22 4 0 0 0 0.047788 2 27413 27413;27522 50.855 30.401 1 12505000 23603 1397 16037 16339 27811;27812 27811 0.06585711122625071 IPFVRQQVY 9 Unmodified _IPFVRQQVY_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA;ENST00000471743.1_1_2:26435372-26437931:-|nuORF;ENST00000540341.1_1_12:8787398-8787947:+|nuORF ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3245849609375 2 575.324391 1148.63423 0.81524 0.00046903 -0.4309 -0.00024791 0.38433 0.00022112 575.3241354142165 57.027 0.3405 51.05 50.859 51.2 -5.9769 37 20 3 0 0 0 0.0082475 1 36414 36414 104.8 44.41 1 27631000 23604 1397 16037 16339 27813 27813 0.06585711122625071 IPFWYHMY 8 Unmodified _IPFWYHMY_ 0 0 0 nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 nc|ENSG00000164169|Q6P2P2-2|PRMT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7677001953125 2 578.767863 1155.52117 NaN NaN NaN NaN NaN NaN NaN 48.863 1 48.863 48.363 49.363 0 0 0 0 0.97444 1 26841 26841 2.8892 0 1 23605 7154 16038 16340 27814 27814 -0.050366805949352056 IPFYRGERITF 11 Unmodified _IPFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.9230651855469 3 466.922467 1397.74557 0.51662 0.00024122 0.61795 0.00028853 1.1346 0.00052975 466.9225894739688 58.733 0.33378 58.672 58.505 58.839 -0.060719 57 16 5 0 0 0 0.31264 2 31956 31956;32055 26.121 18.644 1 21681000 23606 2113 16039 16341 27815;27816 27815 0.0626072575987564 IPFYRGERITF 11 Unmodified _IPFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2575378417969 3 466.922467 1397.74557 0.40441 0.00018883 0.51705 0.00024142 0.92146 0.00043025 466.92274814397626 84.516 0.65394 78.341 77.91 78.564 -6.1757 80 37 3 0 0 0 0.21145 1 55523 55523 31.462 18.606 1 22739000 23607 2113 16039 16341 27817 27817 0.0626072575987564 IPFYVATSM 9 Oxidation (M) _IPFYVATSM(Oxidation (M))_ IPFYVATSM(1) IPFYVATSM(43) 0 0 1 ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7564086914062 2 522.757161 1043.49977 NaN NaN NaN NaN NaN NaN NaN 60.398 1 60.354 59.854 60.854 -0.04351 0 0 0 0.10161 1 32941 32941 42.968 23.529 1 23608 2107 16040 16342 27818 27818 363 -0.02024110414322422 IPGAWADLTV 10 Unmodified _IPGAWADLTV_ 0 0 0 ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2 ENST00000558588.5_1_15:40583969-40599873:-|nuORF ENST00000558588.5_1_15:40583969-40599873:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.783203125 2 521.782025 1041.5495 0.21187 0.00011055 0.39672 0.000207 0.60859 0.00031755 521.7821494838665 40.997 0.3203 40.694 40.543 40.863 -0.30304 39 15 3 0 0 0 0.56348 1 21777 21777 13.042 0.80181 1 19721000 23609 4980 16041 16343 27819 27819 0.030383405859765844 IPGGYFSSV 9 Unmodified _IPGGYFSSV_ 0 0 0 nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.80615234375 1 926.46181 925.454533 1.2782 0.0011842 0.47616 0.00044115 1.7543 0.0016253 926.4618095738703 62.999 0.47382 56.823 56.526 57 -6.1757 53 24 3 0 0 0 0.48152 1 40549 40549 8.5933 1.304 1 42883000 23610 4455 16042 16344 27820 27820 -0.011175928851798744 IPGKIIWWY 9 Unmodified _IPGKIIWWY_ 0 0 0 REV__ENSG00000106128|ENST00000326139|GHRHR REV__ENSG00000106128|ENST00000326139|GHRHR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.573486328125 3 392.558577 1174.6539 0.20447 8.0268E-05 -0.78211 -0.00030702 -0.57764 -0.00022676 392.89260366347344 54.721 0.24395 54.654 54.56 54.804 -0.066936 16 11 2 0 0 0 0.21242 1 29707 29707 1.1933 0.41681 1 902210 + 23611 18493 16043 16345 27821 27821 0.07356087133371148 IPGKSRSLVL 10 Unmodified _IPGKSRSLVL_ 0 0 0 ENSG00000196152|ENST00000342483|ZNF79 ENSG00000196152|ENST00000342483|ZNF79 ENSG00000196152|ENST00000342483|ZNF79 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2292175292969 3 357.229119 1068.66553 0.89547 0.00031989 0.11059 3.9508E-05 1.0061 0.0003594 357.2291112994424 23.895 0.54931 21.067 20.791 21.34 -2.8273 122 32 5 0 0 0 0.47059 1 13075 13075 17.863 2.1245 1 259100000 23612 9770 16044 16346 27822 27822 0.13394284156697722 IPGLATAY 8 Unmodified _IPGLATAY_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.4440307617188 1 805.445431 804.438155 0.050536 4.0704E-05 -1.6023 -0.0012906 -1.5518 -0.0012499 805.4445928643363 54.932 0.22462 54.932 54.852 55.077 0 15 9 2 0 0 0 0.29369 1 30526 30526 56.048 15.6 1 1370000 23613 3843 16045 16347 27823 27823 0.028113259486985953 IPGLATAY 8 Unmodified _IPGLATAY_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.4462280273438 1 805.445431 804.438155 0.058213 4.6888E-05 0.11582 9.3285E-05 0.17403 0.00014017 805.4457394062439 55.564 0.24903 55.086 54.964 55.213 -0.47798 20 11 2 0 0 0 0.18701 1 30118 30118 75.128 32.16 1 1927200 23614 3843 16045 16347 27824 27824 0.028113259486985953 IPGLATAY 8 Unmodified _IPGLATAY_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 805.4473266601562 1 805.445431 804.438155 1.4175 0.0011418 -0.67419 -0.00054302 0.74336 0.00059873 805.4449934577056 62.995 0.29628 56.819 56.653 56.949 -6.1757 23 14 2 0 0 0 0.11211 2 40619 40619;40747 96.119 43.426 1 13853000 23615 3843 16045 16347 27825;27826 27825 0.028113259486985953 IPGLAYAVSY 10 Unmodified _IPGLAYAVSY_ 0 0 0 REV__ENSG00000187714|ENST00000374115|SLC18A3 REV__ENSG00000187714|ENST00000374115|SLC18A3 MSMS AL20221201_MKP_PDAC_01 4 527.284423828125 2 527.2844 1052.55425 NaN NaN NaN NaN NaN NaN NaN 96.206 1 90.031 89.531 90.531 -6.1757 0 0 0 0.28126 1 63745 63745 38.151 7.5146 1 + 23616 23652 16046 16348 27827 27827 0.030072247287534992 IPGLKKPG 8 Unmodified _IPGLKKPG_ 0 0 0 ENST00000311922.3_1_8:126442809-126443172:+|nuORF ENST00000311922.3_1_8:126442809-126443172:+|nuORF ENST00000311922.3_1_8:126442809-126443172:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.265625 2 405.265813 808.517074 -0.096775 -3.922E-05 0.11406 4.6223E-05 0.017281 7.0035E-06 405.2658839384021 34.404 0.29624 34.431 34.265 34.561 0.027401 24 13 2 0 0 0 0.80232 1 18199 18199 5.2307 0.47466 1 2266300 23617 11700 16047 16349 27828 27828 0.1051559797366508 IPGMFKEVY 9 Unmodified _IPGMFKEVY_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7838134765625 2 542.280803 1082.54705 0.7199 0.00039039 -1.9363 -0.00105 -1.2164 -0.00065961 542.2800247194422 63.061 0.31715 56.885 56.719 57.036 -6.1757 38 16 3 0 0 0 0.19361 1 40742 40742 23.79 4.5328 1 24374000 23618 3658 16048 16350 27829 27829 0.009081688566993762 IPGRQSWY 8 Unmodified _IPGRQSWY_ 0 0 0 ENST00000509647.1_1_4:187647586-187647802:-|nuORF ENST00000509647.1_1_4:187647586-187647802:-|nuORF ENST00000509647.1_1_4:187647586-187647802:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2985534667969 2 503.758884 1005.50321 0.7678 0.00038679 -1.1993 -0.00060415 -0.43149 -0.00021737 503.75781871908157 59.782 0.42078 59.782 59.602 60.023 0 48 19 3 0 0 0 8.7369 1 33293 33293 6.3541 0 1 8042700 23619 14579 16049 16351 27830 27830 0.0006832047456555301 IPGSPSWSTF 10 Unmodified _IPGSPSWSTF_ 0 0 0 REV__ENST00000451997.5_1_22:38062312-38062468:+|nuORF REV__ENST00000451997.5_1_22:38062312-38062468:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7661743164062 2 539.763832 1077.51311 0.44819 0.00024192 2.0032 0.0010813 2.4514 0.0013232 539.765014946819 64.068 0.24535 63.583 63.473 63.718 -0.48512 17 11 2 0 0 0 0.66569 1 34983 34983 6.7232 0.51738 1 885630 + 23620 27213 16050 16352 27831 27831 -0.022545363107155936 IPGTGVSLLV 10 Unmodified _IPGTGVSLLV_ 0 0 0 nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2956237792969 2 478.294768 954.574983 0.52691 0.00025202 -0.63764 -0.00030498 -0.11073 -5.2963E-05 478.2943975898403 53.43 0.38456 53.43 53.221 53.606 0 46 17 4 0 0 0 0.16524 1 29528 29528 37.974 1.4678 1 24669000 23621 2511 16051 16353 27832 27832 0.09587815108420727 IPGWFLNRQ 9 Unmodified _IPGWFLNRQ_ 0 0 0 ENST00000495909.2_1_5:90650295-90650631:+|nuORF ENST00000495909.2_1_5:90650295-90650631:+|nuORF ENST00000495909.2_1_5:90650295-90650631:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5423583984375 3 377.541697 1129.60326 1.0251 0.000387 0.17732 6.6947E-05 1.2024 0.00045395 377.5415059697387 22.511 0.32502 19.732 19.519 19.844 -2.7784 37 17 3 0 0 0 0.42049 1 12061 12061 11.495 0 1 7470400 23622 14362 16052 16354 27833 27833 0.043645578083669534 IPGYEKMEDFY 11 Unmodified _IPGYEKMEDFY_ 0 0 0 REV__nc|ENSG00000162627|Q9UNH6-2|SNX7 REV__nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5428771972656 3 464.544444 1390.6115 -0.061504 -2.8572E-05 -1.3604 -0.00063196 -1.4219 -0.00066053 464.543926112744 31.838 0.34291 31.709 31.548 31.891 -0.12915 45 13 5 0 0 0 0.72952 1 16649 16649 0.50596 0 1 25275000 + 23623 21669 16053 16355 27834 27834 -0.0681772084781187 IPGYKSFV 8 Unmodified _IPGYKSFV_ 0 0 0 REV__nc|ENSG00000136527|P62995-3|TRA2B REV__nc|ENSG00000136527|P62995-3|TRA2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.504638671875 1 910.503281 909.496004 0.84875 0.00077279 -0.42314 -0.00038527 0.42561 0.00038752 910.5020381112378 101.15 0.12507 94.972 94.907 95.032 -6.1757 12 7 2 0 0 0 0.44122 1 67805 67805 40.449 4.4044 1 17931000 + 23624 20167 16054 16356 27835 27835 0.03763587874152563 IPGYSAFELY 10 Unmodified _IPGYSAFELY_ 0 0 0 ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2872924804688 2 580.28714 1158.55973 0.40944 0.00023759 1.0759 0.00062432 1.4853 0.00086191 580.2879945955758 74.832 0.48493 74.832 74.626 75.111 0 42 24 3 0 0 0 0.6606 1 41675 41675 7.2892 0 1 2183200 23625 7402 16055 16357 27836 27836 -0.01321096479409789 IPHAFITHF 9 Unmodified _IPHAFITHF_ 0 0 0 nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5309753417969 3 361.53091 1081.5709 0.59696 0.00021582 -0.44781 -0.0001619 0.14916 5.3925E-05 361.5307298738183 52.342 0.23707 52.283 52.189 52.426 -0.058918 26 11 3 0 0 0 0.2546 1 28354 28354 19.362 7.8672 1 3771700 23626 3404 16056 16358 27837 27837 0.033377704053464186 IPHEAFVY 8 Unmodified _IPHEAFVY_ 0 0 0 ENSG00000157881|ENST00000378466|PANK4 ENSG00000157881|ENST00000378466|PANK4 ENSG00000157881|ENST00000378466|PANK4 MSMS AL20221201_MKP_PDAC_01 4 488.2504272460938 2 488.25036 974.486168 NaN NaN NaN NaN NaN NaN NaN 53.165 1 47.361 46.861 47.861 -5.8042 0 0 0 0.77249 1 33578 33578 24.674 0.46393 1 23627 6547 16057 16359 27838 27838 -0.0020960013124522447 IPHESQVY 8 Unmodified _IPHESQVY_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7431030273438 2 486.742899 971.471246 -0.33816 -0.0001646 0.50455 0.00024559 0.16639 8.0989E-05 486.7429881692369 26.253 0.30066 26.253 26.106 26.407 0 30 16 3 0 0 0 0.31612 1 13464 13464 53.576 21.459 1 4732400 23628 3211 16058 16360 27839 27839 -0.01563091999230437 IPHESQVY 8 Unmodified _IPHESQVY_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.742919921875 2 486.742899 971.471246 0.56979 0.00027734 1.7097 0.00083216 2.2794 0.0011095 486.74366699778085 29.77 0.17434 26.468 26.37 26.544 -3.3016 10 8 2 0 0 0 0.40035 1 16786 16786 44.407 6.433 1 20968000 23629 3211 16058 16360 27840 27840 -0.01563091999230437 IPHGDLKLEL 10 Unmodified _IPHGDLKLEL_ 0 0 0 REV__ENSG00000213512|ENST00000294671|GBP7 REV__ENSG00000213512|ENST00000294671|GBP7 MSMS AL20221201_MKP_PDAC_01 4 378.8890075683594 3 378.888763 1133.64446 NaN NaN NaN NaN NaN NaN NaN 26.351 1 23.4 22.9 23.9 -2.9511 0 0 0 0.78689 1 14515 14515 12.873 3.3286 1 + 23630 24284 16059 16361 27841 27841 0.08298274057187882 IPHHHSFYDF 10 Unmodified _IPHHHSFYDF_ 0 0 0 ENSG00000071859|ENST00000393600|FAM50A ENSG00000071859|ENST00000393600|FAM50A ENSG00000071859|ENST00000393600|FAM50A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.3045654296875 2 650.298904 1298.58326 0.42185 0.00027433 2.4028 0.0015625 2.8246 0.0018369 650.3010179144487 85.675 0.30846 85.174 85.086 85.395 -0.5015 31 14 3 0 0 0 0.71123 1 46993 46993 1.6526 0 1 1199200 23631 1063 16060 16362 27842 27842 -0.05409237922231114 IPHHIIVKF 9 Unmodified _IPHHIIVKF_ 0 0 0 nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3;ENSG00000156469|ENST00000287025|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5623474121094 3 368.562321 1102.66514 0.28476 0.00010495 0.39668 0.0001462 0.68143 0.00025115 368.56242103868954 39.778 0.33501 39.783 39.647 39.982 0.0050583 48 15 4 0 0 0 0.025842 2 21161 21161;21265 57.722 45.481 1 25340000 23632 6456 16061 16363 27843;27844 27843 0.11790909227511293 IPHHIIVKF 9 Unmodified _IPHHIIVKF_ 0 0 0 nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3;ENSG00000156469|ENST00000287025|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3416748046875 2 552.339844 1102.66514 0.38955 0.00021516 0.71778 0.00039646 1.1073 0.00061162 552.3404979360761 39.742 0.22664 39.747 39.668 39.894 0.0050545 16 10 3 0 0 0 0.024882 1 21189 21189 56.541 51.311 1 1390200 23633 6456 16061 16363 27845 27845 0.11790909227511293 IPHILKEMY 9 Unmodified _IPHILKEMY_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8798217773438 3 381.87921 1142.6158 0.32459 0.00012395 0.70993 0.00027111 1.0345 0.00039506 381.87970596324504 48.383 0.17241 48.339 48.261 48.434 -0.04369 23 8 4 0 0 0 0.14 1 26120 26120 27.223 13.608 1 5532200 23634 1863 16062 16364 27846 27846 0.05019833156393361 IPHILKEMY 9 Unmodified _IPHILKEMY_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8795776367188 3 381.87921 1142.6158 0.8385 0.0003202 -0.43431 -0.00016585 0.40419 0.00015435 381.87912973657797 84.538 0.80128 78.362 77.856 78.657 -6.1757 105 45 3 0 0 0 0.1685 5 55368 55357;55368;55498;55622;55761 21.59 12.046 1 97889000 23635 1863 16062 16364 27847;27848;27849;27850;27851 27848 0.05019833156393361 IPHILKEMY 9 Unmodified _IPHILKEMY_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3146362304688 2 572.315177 1142.6158 0.4847 0.0002774 -0.25578 -0.00014639 0.22891 0.00013101 572.3151350708721 84.523 0.4818 78.347 78.05 78.532 -6.1757 55 27 3 0 0 0 0.010611 2 55592 55467;55592 78.728 46.423 1 32429000 23636 1863 16062 16364 27852;27853 27853 0.05019833156393361 IPHILKEMY 9 Unmodified _IPHILKEMY_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MSMS AL20221201_MKP_PDAC_01 4 381.8802185058594 3 381.87921 1142.6158 NaN NaN NaN NaN NaN NaN NaN 83.98 1 77.804 77.304 78.304 -6.1757 0 0 0 0.27852 1 55231 55231 19.626 4.6688 1 23637 1863 16062 16364 27854 27854 0.05019833156393361 IPHILKEMY 9 Oxidation (M) _IPHILKEM(Oxidation (M))Y_ IPHILKEM(1)Y IPHILKEM(54)Y 0 0 1 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8140869140625 2 580.312635 1158.61072 0.66392 0.00038528 -1.2478 -0.00072409 -0.58385 -0.00033881 580.3121867887534 43.664 0.53822 38.9 38.65 39.188 -4.7648 66 33 3 0 0 0 0.032796 1 26687 26687 53.833 29.812 1 9647200 23638 1863 16062 16365 27855 27855 310 0.037755292937617924 IPHIVNNAY 9 Unmodified _IPHIVNNAY_ 0 0 0 nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS nc|ENSG00000109618|Q9HD40-3|SEPSECS nc|ENSG00000109618|Q9HD40-3|SEPSECS MSMS AL20221201_MKP_PDAC_01 4 520.779541015625 2 520.779816 1039.54508 NaN NaN NaN NaN NaN NaN NaN 46.113 1 41.158 40.658 41.658 -4.9549 0 0 0 0.086291 1 28429 28429 46.921 8.7697 1 23639 2660 16063 16366 27856 27856 0.026888761630971203 IPHIVNNAY 9 Unmodified _IPHIVNNAY_ 0 0 0 nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS nc|ENSG00000109618|Q9HD40-3|SEPSECS nc|ENSG00000109618|Q9HD40-3|SEPSECS MSMS AL20221201_MKP_PDAC_01 4 520.7803344726562 2 520.779816 1039.54508 NaN NaN NaN NaN NaN NaN NaN 46.301 1 41.244 40.744 41.744 -5.0566 0 0 0 0.13852 1 28572 28572 38.151 9.978 1 23640 2660 16063 16366 27857 27857 0.026888761630971203 IPHLLGDVVF 10 Unmodified _IPHLLGDVVF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3209228515625 2 555.321317 1108.62808 0.72246 0.0004012 -0.056555 -3.1406E-05 0.66591 0.00036979 555.3211850664917 84.162 0.33403 83.662 83.507 83.841 -0.49961 39 14 4 0 0 0 0.13184 2 46032 46032;46128 42.095 13.608 1 2870200 23641 4927 16064 16367 27858;27859 27858 0.07811192891085739 IPHLLGDVVF 10 Unmodified _IPHLLGDVVF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3214111328125 2 555.321317 1108.62808 0.29408 0.00016331 0.0016091 8.9354E-07 0.29569 0.0001642 555.3212522364138 83.573 0.26617 83.637 83.465 83.731 0.063179 22 9 3 0 0 0 0.045724 1 46200 46200 60.39 24.263 1 15617000 23642 4927 16064 16367 27860 27860 0.07811192891085739 IPHMASTLFSF 11 Unmodified _IPHMASTLFSF_ 0 0 0 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 ENSG00000139826|ENST00000375898|ABHD13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 626.3170166015625 2 625.815541 1249.61653 0.61161 0.00038275 -0.28192 -0.00017643 0.32968 0.00020632 625.8156966868131 81.905 0.21392 75.729 75.566 75.78 -6.1757 15 11 2 0 0 0 0.28752 1 53808 53808 5.7319 0 1 8225700 23643 5191 16065 16368 27861 27861 0.0017062780543710687 IPHMDIEAL 9 Oxidation (M) _IPHM(Oxidation (M))DIEAL_ IPHM(1)DIEAL IPHM(44)DIEAL 0 0 1 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.766845703125 2 527.765517 1053.51648 0.2329 0.00012292 -0.2862 -0.00015105 -0.053297 -2.8128E-05 527.7656099530004 43.442 0.40745 43.442 43.242 43.649 0 65 19 5 0 0 0 0.052168 1 23543 23543 44.407 19.008 1 204200000 23644 10143 16066 16369 27862 27862 1652 -0.008136095283589384 IPHMDIEAL 9 Unmodified _IPHMDIEAL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.768798828125 2 519.76806 1037.52157 0.35726 0.00018569 0.29301 0.0001523 0.65027 0.00033799 519.7682138646007 63.062 0.37359 63.062 62.87 63.244 0 45 15 4 0 0 0 0.052168 1 35168 35168 44.407 10.305 1 17175000 23645 10143 16066 16370 27863 27863 0.004306943342726299 IPHMDIEAL 9 Unmodified _IPHMDIEAL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7688598632812 2 519.76806 1037.52157 1.0656 0.00055388 -0.94287 -0.00049007 0.12276 6.3808E-05 519.7679938222794 68.925 0.886 62.749 62.439 63.325 -6.1757 111 48 3 0 0 0 0.019979 4 44996 44884;44996;45127;45312 63.563 27.436 1 74766000 23646 10143 16066 16370 27864;27865;27866;27867 27865 0.004306943342726299 IPHMDIEAL 9 Unmodified _IPHMDIEAL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF;ENST00000426688.1_1_1:81674334-81674790:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7701416015625 2 519.76806 1037.52157 1.1705 0.00060838 -2.0777 -0.0010799 -0.90719 -0.00047153 519.7670465504552 70.958 1.1827 64.782 64.374 65.556 -6.1757 84 60 2 0 0 0 0.019979 3 46253 46253;46378;46507 63.563 36.679 1 35051000 23647 10143 16066 16370 27868;27869;27870 27868 0.004306943342726299 IPHSFALISY 10 Unmodified _IPHSFALISY_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8129272460938 2 574.310949 1146.60735 0.18345 0.00010535 0.14335 8.233E-05 0.3268 0.00018768 574.311064136186 85.208 0.94713 79.032 78.532 79.479 -6.1757 107 57 2 0 0 0 0.0020965 6 56244 55809;55820;55988;56115;56244;56380 108 49.318 1 36593000 23648 370 16067 16371 27871;27872;27873;27874;27875;27876 27875 0.03990602511430552 IPHSTKRFPGY 11 Unmodified _IPHSTKRFPGY_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.9033508300781 3 434.903295 1301.68806 0.36868 0.00016034 0.027567 1.1989E-05 0.39625 0.00017233 434.90304438073 24.237 0.35385 24.258 24.063 24.417 0.021185 29 13 3 0 0 0 0.16515 1 12480 12480 23.016 12.117 1 4718000 23649 3636 16068 16372 27877 27877 0.049278835543191235 IPHSTKRFPGY 11 Unmodified _IPHSTKRFPGY_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000480199.1_1_8:28157565-28157883:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.9034423828125 3 434.903295 1301.68806 0.59804 0.00026009 -0.18774 -8.1651E-05 0.41029 0.00017844 434.9030314303217 27.3 0.37603 24.263 24.059 24.435 -3.0365 30 18 2 0 0 0 0.0079227 1 15098 15098 64.692 49.854 1 25025000 23650 3636 16068 16372 27878 27878 0.049278835543191235 IPHSTLEY 8 Unmodified _IPHSTLEY_ 0 0 0 nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.484375 1 959.483273 958.475997 0.0323 3.0991E-05 -0.25339 -0.00024312 -0.22109 -0.00021213 959.4835712700232 38.018 0.27922 38.018 37.885 38.165 0 22 13 2 0 0 0 0.57408 1 20231 20231 28.173 1.832 1 1999000 23651 16476 16069 16373 27879 27879 -0.004902078564668955 IPHTDPVDY 9 Unmodified _IPHTDPVDY_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.75390625 2 528.753464 1055.49238 -0.31139 -0.00016465 0.6813 0.00036024 0.36991 0.00019559 528.75392067355 34.315 0.21496 34.315 34.207 34.422 0 26 10 3 0 0 0 0.016184 1 18053 18053 67.344 29.37 1 12291000 23652 9334 16070 16374 27880 27880 -0.03315126690381476 IPHTDPVDYEF 11 Unmodified _IPHTDPVDYEF_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.8094482421875 2 666.808968 1331.60338 0.5133 0.00034227 -0.59016 -0.00039352 -0.07686 -5.1251E-05 666.8085506736334 54.143 0.32279 54.143 53.968 54.291 0 41 14 3 0 0 0 0.00047726 2 29993 29993;30108 88.954 58.317 1 21989000 23653 9334 16071 16375 27881;27882 27881 -0.04915531772940085 IPHTDPVDYEF 11 Unmodified _IPHTDPVDYEF_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.3126220703125 2 666.808968 1331.60338 0.085292 5.6873E-05 0.1397 9.3151E-05 0.22499 0.00015002 667.3105382952673 54.739 0.2568 54.273 54.124 54.381 -0.46664 21 12 2 0 0 0 0.017265 1 29645 29645 60.074 41.928 1 8128200 23654 9334 16071 16375 27883 27883 -0.04915531772940085 IPHTDPVDYEF 11 Unmodified _IPHTDPVDYEF_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.8098754882812 2 666.808968 1331.60338 0.78979 0.00052664 -0.4593 -0.00030627 0.33048 0.00022037 666.8086218910681 61.025 0.52757 54.877 54.667 55.195 -6.1478 62 27 3 0 0 0 2.6672E-15 2 39378 39251;39378 139.14 106.35 1 46473000 23655 9334 16071 16375 27884;27885 27885 -0.04915531772940085 IPHWINHSF 9 Unmodified _IPHWINHSF_ 0 0 0 nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.19775390625 3 384.197931 1149.57196 0.36812 0.00014143 0.72901 0.00028008 1.0971 0.00042151 384.1981321134874 48.12 0.21628 48.081 47.967 48.184 -0.038647 24 10 3 0 0 0 0.38785 1 25963 25963 17.443 9.4972 1 1477600 23656 16082 16072 16376 27886 27886 0.00315984774260869 IPHYDYLT 8 Unmodified _IPHYDYLT_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2536926269531 2 511.2531 1020.49165 0.29982 0.00015328 -0.21033 -0.00010753 0.089484 4.5749E-05 511.25292726732926 91.115 0.39761 91.115 90.927 91.325 0 35 22 2 0 0 0 0.80975 1 50348 50348 0.79363 0 1 1792100 23657 8543 16073 16377 27887 27887 -0.017779213394533144 IPIAGRDITY 10 Unmodified _IPIAGRDITY_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.8140869140625 2 559.813856 1117.61316 0.77095 0.00043159 0.17727 9.9237E-05 0.94822 0.00053082 559.8140422461004 49.581 0.27729 49.581 49.393 49.671 0 29 11 3 0 0 0 0.033218 1 27333 27333 66.457 14.188 1 11864000 23658 2435;3085 16074 16378 27888 27888 0.05905701023084475 IPIAGRDITY 10 Unmodified _IPIAGRDITY_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.814208984375 2 559.813856 1117.61316 1.0162 0.0005689 -0.06952 -3.8918E-05 0.94671 0.00052998 559.8136215169172 50.052 0.37954 49.659 49.451 49.83 -0.3923 51 18 4 0 0 0 0.1899 2 26906 26906;27012 34.932 15.675 1 61382000 23659 2435;3085 16074 16378 27889;27890 27889 0.05905701023084475 IPIAGRDITY 10 Unmodified _IPIAGRDITY_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8138427734375 2 559.813856 1117.61316 1.3511 0.00075638 -0.83854 -0.00046942 0.51259 0.00028695 559.8134226525418 49.71 0.25673 49.661 49.549 49.805 -0.048824 25 12 3 0 0 0 0.13008 1 26850 26850 42.312 11.044 1 5021500 23660 2435;3085 16074 16378 27891 27891 0.05905701023084475 IPIAGRDITY 10 Unmodified _IPIAGRDITY_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8146362304688 2 559.813856 1117.61316 0.43261 0.00024218 0.40022 0.00022405 0.83283 0.00046623 559.8140788321623 56.19 0.55305 50.213 49.913 50.466 -5.9769 81 31 3 0 0 0 0.025861 3 35716 35716;35850;35974 70.332 26.474 1 341870000 23661 2435;3085 16074 16378 27892;27893;27894 27892 0.05905701023084475 IPIAIRERF 9 Unmodified _IPIAIRERF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8441162109375 2 557.840208 1113.66586 0.63212 0.00035262 0.58765 0.00032781 1.2198 0.00068043 557.840782087646 48.453 0.21557 48.409 48.32 48.536 -0.04369 26 10 3 0 0 0 0.032796 1 26122 26122 53.833 15.682 1 5710800 23662 748 16075 16379 27895 27895 0.1135770387654702 IPIAIRERF 9 Unmodified _IPIAIRERF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8411254882812 2 557.840208 1113.66586 1.1865 0.0006619 -0.70754 -0.00039469 0.47901 0.00026721 557.8396859100835 53.524 0.20314 47.72 47.628 47.831 -5.8042 15 12 2 0 0 0 0.05483 1 33848 33848 43.772 13.548 1 17983000 23663 748 16075 16379 27896 27896 0.1135770387654702 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3580932617188 2 584.358431 1166.70231 0.37524 0.00021927 -0.48468 -0.00028323 -0.10945 -6.3956E-05 584.3582254731976 71.164 0.31285 70.687 70.526 70.839 -0.47736 37 13 4 0 0 0 0.33612 1 38904 38904 24.882 4.467 1 4229300 23664 2715 16076 16380 27897 27897 0.1256253598260173 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3597412109375 2 584.358431 1166.70231 1.2707 0.00074252 -0.10077 -5.8887E-05 1.1699 0.00068363 584.3582817131266 70.63 0.39196 70.666 70.463 70.855 0.035515 52 17 4 0 0 0 0.010729 2 38828 38828;38930 67.081 21.381 1 20014000 23665 2715 16076 16380 27898;27899 27898 0.1256253598260173 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3544921875 2 584.358431 1166.70231 0.47142 0.00027548 -0.65386 -0.00038209 -0.18245 -0.00010661 584.3580373880461 84.521 1.3692 78.345 77.508 78.877 -6.1757 100 76 2 0 0 0 0.06459 3 55376 55376;55508;55675 47.732 14.946 1 19036000 23666 2715 16076 16380 27900;27901;27902 27900 0.1256253598260173 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MSMS AL20221201_MKP_PDAC_01 4 584.3590698242188 2 584.358431 1166.70231 NaN NaN NaN NaN NaN NaN NaN 83.879 1 77.703 77.203 78.203 -6.1757 0 0 0 0.2377 1 55166 55166 37.075 2.9722 1 23667 2715 16076 16380 27903 27903 0.1256253598260173 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MSMS AL20221201_MKP_PDAC_01 4 584.3580932617188 2 584.358431 1166.70231 NaN NaN NaN NaN NaN NaN NaN 84.87 1 78.694 78.194 79.194 -6.1757 0 0 0 0.11833 1 55858 55858 47.732 7.7747 1 23668 2715 16076 16380 27904 27904 0.1256253598260173 IPIALSGRDIL 11 Unmodified _IPIALSGRDIL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MSMS AL20221201_MKP_PDAC_01 4 584.3588256835938 2 584.358431 1166.70231 NaN NaN NaN NaN NaN NaN NaN 85.059 1 78.884 78.384 79.384 -6.1757 0 0 0 0.095171 1 55994 55994 51.488 14.982 1 23669 2715 16076 16380 27905 27905 0.1256253598260173 IPICPVVSF 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))IPIC(Carbamidomethyl (C))PVVSF_ IPIC(1)PVVSF IPIC(47)PVVSF 1 1 0 ENSG00000056097|ENST00000265069|ZFR;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2875366210938 2 537.288628 1072.5627 1.1119 0.00059743 -1.4549 -0.00078167 -0.34292 -0.00018425 537.2870058089601 87.916 2.3872 81.74 80.037 82.424 -6.1757 343 131 5 0 0 0 0.045537 1 57626 57626 46.921 10.794 1 304550000 23670 783 16077 16381 27906 27906 64 0.02932455373729681 IPIDFSFL 8 Unmodified _IPIDFSFL_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2653503417969 2 476.262936 950.51132 1.6009 0.00076243 1.3416 0.00063896 2.9425 0.0014014 476.2636948927952 100.93 0.11371 94.757 94.701 94.815 -6.1757 11 6 2 0 0 0 0.64035 1 67663 67663 22.453 0 1 18318000 23671 8362 16078 16382 27907 27907 0.03408454671330219 IPIDGNFFTY 10 Unmodified _IPIDGNFFTY_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1;ENST00000493113.1_1_9:75542013-75567871:-|nuORF;ENST00000482210.5_1_9:75538907-75567871:-|nuORF ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.7932739257812 2 593.792589 1185.57063 NaN NaN NaN NaN NaN NaN NaN 85.431 1 85.493 84.993 85.993 0.061638 0 0 0 0.55039 1 47292 47292 34.402 12.655 1 23672 7289 16079 16383 27908 27908 -0.014736941051296526 IPIDGNFFTY 10 Unmodified _IPIDGNFFTY_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1;ENST00000493113.1_1_9:75542013-75567871:-|nuORF;ENST00000482210.5_1_9:75538907-75567871:-|nuORF ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.79248046875 2 593.792589 1185.57063 0.79312 0.00047095 1.2139 0.00072082 2.007 0.0011918 593.793405431756 94.73 0.99507 88.555 88.045 89.04 -6.1757 137 56 3 0 0 0 0.1028 4 62597 62477;62597;62715;62846 62.573 39.95 1 33098000 23673 7289 16079 16383 27909;27910;27911;27912 27910 -0.014736941051296526 IPIDHDEGEGV 11 Unmodified _IPIDHDEGEGV_ 0 0 0 REV__ENSG00000096060|ENST00000357266|FKBP5 REV__ENSG00000096060|ENST00000357266|FKBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7794189453125 2 590.777667 1179.54078 0.040089 2.3683E-05 0.52165 0.00030818 0.56174 0.00033186 590.7782151684348 52.542 0.32642 52.542 52.402 52.728 0 26 14 2 0 0 0 0.48742 1 29049 29049 27.629 12.791 1 5835700 + 23674 17956 16080 16384 27913 27913 -0.041806778411455525 IPIDSTVSF 9 Unmodified _IPIDSTVSF_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.5117797851562 1 978.514239 977.506963 0.12132 0.00011872 -1.6911 -0.0016548 -1.5698 -0.001536 978.5119719770269 65.801 0.27685 65.801 65.718 65.995 0 20 14 2 0 0 0 0.023164 1 36702 36702 60.39 15.983 1 1500000 23675 3337 16081 16385 27914 27914 0.01730945457757116 IPIDSTVSF 9 Unmodified _IPIDSTVSF_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5184936523438 1 978.514239 977.506963 0.060383 5.9086E-05 0.25653 0.00025102 0.31691 0.0003101 978.5145528237052 66.404 0.26161 65.921 65.807 66.068 -0.48323 22 12 2 0 0 0 0.087258 1 36231 36231 36.044 9.1605 1 1972400 23676 3337 16081 16385 27915 27915 0.01730945457757116 IPIDSTVSF 9 Unmodified _IPIDSTVSF_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7602844238281 2 489.760758 977.506963 0.80214 0.00039285 -0.66338 -0.0003249 0.13876 6.7958E-05 489.7601940411066 73.349 0.31318 67.173 66.93 67.243 -6.1757 22 14 2 0 0 0 0.010877 1 47969 47969 77.984 13.748 1 9170500 23677 3337 16081 16385 27916 27916 0.01730945457757116 IPIEFRVSL 9 Unmodified _IPIEFRVSL_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.323974609375 2 537.321317 1072.62808 0.96047 0.00051608 1.5025 0.00080731 2.463 0.0013234 537.3221425722304 93.882 0.195 87.706 87.647 87.842 -6.1757 16 10 2 0 0 0 0.040683 1 62189 62189 49.554 3.5333 1 8636100 23678 6567 16082 16386 27917 27917 0.09467192891088416 IPIEPDYKF 9 Unmodified _IPIEPDYKF_ 0 0 0 nc|ENSG00000165671|Q96L73-2|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;ENSG00000165671|ENST00000439151|NSD1 nc|ENSG00000165671|Q96L73-2|NSD1 nc|ENSG00000165671|Q96L73-2|NSD1 MSMS AL20221201_MKP_PDAC_01 4 561.298095703125 2 561.297507 1120.58046 NaN NaN NaN NaN NaN NaN NaN 64.04 1 57.864 57.364 58.364 -6.1757 0 0 0 0.044471 1 41456 41456 60.074 17.979 1 23679 7372 16083 16387 27918 27918 0.0249949390022266 IPIEPFYNL 9 Unmodified _IPIEPFYNL_ 0 0 0 REV__ENST00000508827.1_1_14:62031925-62036275:-|nuORF REV__ENST00000508827.1_1_14:62031925-62036275:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2728271484375 2 553.30005 1104.58555 0.68722 0.00038024 -2.4194 -0.0013387 -1.7322 -0.00095842 553.2986931294781 53.12 0.14638 53.12 53.02 53.166 0 11 6 2 0 0 0 0.18482 1 29387 29387 13.042 0 1 1093800 + 23680 28121 16084 16388 27919 27919 0.037437977628542285 IPIERLYVTY 10 Unmodified _IPIERLYVTY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3609008789062 2 633.858264 1265.70197 0.22119 0.0001402 -0.0073924 -4.6857E-06 0.2138 0.00013552 633.8581669285974 64.621 0.47181 64.136 63.887 64.359 -0.48512 80 21 6 0 0 0 0.0096273 2 35176 35176;35282 88.364 51.858 1 107760000 23681 1569 16085 16389 27920;27921 27920 0.07975116262764459 IPIERLYVTY 10 Unmodified _IPIERLYVTY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8587646484375 2 633.858264 1265.70197 0.95757 0.00060696 -0.78542 -0.00049785 0.17215 0.00010912 633.8577266253453 64.096 0.55492 64.085 63.783 64.338 -0.010529 115 27 6 0 0 0 0.0096273 2 35002 35002;35104 88.364 51.858 1 369840000 23682 1569 16085 16389 27922;27923 27922 0.07975116262764459 IPIERLYVTY 10 Unmodified _IPIERLYVTY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.858642578125 2 633.858264 1265.70197 0.79425 0.00050344 -0.23544 -0.00014923 0.55882 0.00035421 633.8581372026188 74.583 2.6707 68.407 66.93 69.601 -6.1757 417 138 4 0 0 0 0.0021808 13 48062 47939;48062;48240;48357;48469;48595;48715;48842;48966;49095;49225;49348;49513 107.56 55.934 1 220220000 23683 1569 16085 16389 27924;27925;27926;27927;27928;27929;27930;27931;27932;27933;27934;27935;27936 27925 0.07975116262764459 IPIFTDVAL 9 Unmodified _IPIFTDVAL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 988.5738525390625 1 988.57136 987.564084 0.2864 0.00028313 0.58192 0.00057527 0.86832 0.0008584 988.5726757435306 95.11 0.20447 94.742 94.634 94.839 -0.36814 20 10 3 0 0 0 0.12841 1 51925 51925 30.225 7.0764 1 778330 23684 3856 16086 16390 27937 27937 0.06980412734139918 IPIFTDVAL 9 Unmodified _IPIFTDVAL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7893371582031 2 494.789318 987.564084 0.53317 0.00026381 0.43085 0.00021318 0.96402 0.00047699 494.7893467248085 95.131 0.33855 94.763 94.541 94.88 -0.36815 38 17 3 0 0 0 0.18465 1 51991 51991 24.674 5.2349 1 1491500 23685 3856 16086 16390 27938 27938 0.06980412734139918 IPIFTDVAL 9 Unmodified _IPIFTDVAL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7915649414062 2 494.789318 987.564084 1.2394 0.00061324 -0.04556 -2.2543E-05 1.1938 0.0005907 494.7890354879651 100.25 0.16019 94.074 93.996 94.157 -6.1757 23 9 4 0 0 0 0.016494 1 66977 66977 67.035 10.494 1 50269000 23686 3856 16086 16390 27939 27939 0.06980412734139918 IPIGDRLYY 9 Unmodified _IPIGDRLYY_ 0 0 0 nc|ENSG00000106868|Q6UWL2-3|SUSD1;ENSG00000106868|ENST00000374270|SUSD1;nc|ENSG00000106868|Q6UWL2-2|SUSD1 nc|ENSG00000106868|Q6UWL2-3|SUSD1 nc|ENSG00000106868|Q6UWL2-3|SUSD1 MSMS AL20221201_MKP_PDAC_01 4 555.3032836914062 2 555.303124 1108.5917 NaN NaN NaN NaN NaN NaN NaN 60.701 1 54.554 54.054 55.054 -6.1478 0 0 0 0.13831 1 39067 39067 38.176 10.002 1 23687 2466 16087 16391 27940 27940 0.04174315994373501 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7770385742188 2 525.776939 1049.53933 0.77451 0.00040722 0.60989 0.00032067 1.3844 0.00072789 525.7769109262491 49.324 0.45232 49.324 49.083 49.536 0 29 20 2 0 0 0 0.016068 1 27136 27136 61.357 23.383 1 27881000 23688 510 16088 16392 27941 27941 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7771606445312 2 525.776939 1049.53933 0.709 0.00037278 0.21977 0.00011555 0.92877 0.00048832 525.7770896907172 49.802 0.55276 49.41 49.159 49.711 -0.3923 63 27 4 0 0 0 0.0074511 2 26734 26734;26836 71.134 33.16 1 62022000 23689 510 16088 16392 27942;27943 27942 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1051.230590820312 1 1050.5466 1049.53933 0.68001 0.00071438 0.73934 0.00077671 1.4193 0.0014911 1050.546470721838 49.781 0.4693 49.389 49.119 49.588 -0.3923 64 23 5 0 0 0 0.025642 1 26843 26843 56.177 20.05 1 11644000 23690 510 16088 16392 27944 27944 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7764892578125 2 525.776939 1049.53933 0.64567 0.00033948 -0.20594 -0.00010828 0.43973 0.0002312 525.7766726546876 49.475 0.37831 49.426 49.19 49.568 -0.048824 31 18 2 0 0 0 0.043669 2 26677 26677;26775 52.268 14.294 1 3429700 23691 510 16088 16392 27945;27946 27945 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7771606445312 2 525.776939 1049.53933 0.97984 0.00051517 -0.22389 -0.00011771 0.75595 0.00039746 525.7767856050077 57.231 0.57172 51.204 50.924 51.496 -6.0275 109 32 4 0 0 0 0.00048187 3 36448 36448;36588;36706 88.904 38.971 1 406070000 23692 510 16088 16392 27947;27948;27949 27947 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 1051.550415039062 1 1050.5466 1049.53933 0.73838 0.0007757 -0.80613 -0.00084687 -0.067751 -7.1176E-05 1050.5454954116587 57.2 0.42272 51.173 51.005 51.428 -6.0275 39 23 2 0 0 0 7.9033E-11 1 36542 36542 118.89 69.34 1 67182000 23693 510 16088 16392 27950 27950 0.016537328607682866 IPIGGGTSVSY 11 Unmodified _IPIGGGTSVSY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1050.5466 1049.53933 -0.12036 -0.00012644 3.2773 0.0034429 3.1569 0.0033165 1050.5484439661132 49.322 0.45232 49.322 49.083 49.536 0 -0.033341 0.0020119 NaN 56.177 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5151400 23694 510 16088 16392 0.016537328607682866 IPIGIDKAL 9 Unmodified _IPIGIDKAL_ 0 0 0 nc|ENSG00000096060|Q13451-2|FKBP5;ENSG00000096060|ENST00000357266|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 nc|ENSG00000096060|Q13451-2|FKBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2981262207031 2 470.29731 938.580068 0.44937 0.00021134 0.4533 0.00021319 0.90268 0.00042453 470.29745474358 57.13 0.25603 56.643 56.542 56.798 -0.48687 20 11 2 0 0 0 0.017075 1 31059 31059 66.457 8.9853 1 4137600 23695 1666 16089 16393 27951 27951 0.10832118971029558 IPIHNEDITY 10 Unmodified _IPIHNEDITY_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.804931640625 2 607.806228 1213.5979 -0.1795 -0.0001091 -0.47857 -0.00029088 -0.65807 -0.00039998 607.8060724198155 42.048 0.26 42.048 41.901 42.161 0 36 13 4 0 0 0 0.0022539 1 22701 22701 107.19 44.614 1 25133000 23696 3032 16090 16394 27952 27952 -0.0003521056476074591 IPIHNEDITY 10 Unmodified _IPIHNEDITY_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.80615234375 2 607.806228 1213.5979 0.4362 0.00026512 0.011902 7.2343E-06 0.4481 0.00027236 607.8059292392804 48.195 0.38568 42.961 42.756 43.142 -5.2339 57 22 4 0 0 0 0.0057332 2 30061 29932;30061 96.367 48.795 1 46101000 23697 3032 16090 16394 27953;27954 27954 -0.0003521056476074591 IPIILQSAL 9 Unmodified _IPIILQSAL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;ENST00000466451.1_1_10:12199921-12200143:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.3131408691406 2 484.312961 966.611368 0.57044 0.00027627 0.017476 8.464E-06 0.58791 0.00028473 484.31296827350144 89.082 0.3157 88.577 88.347 88.663 -0.50423 22 13 2 0 0 0 0.37804 1 48651 48651 13.508 0.97634 1 715180 23698 801 16091 16395 27955 27955 0.12672692005139652 IPIILQSAL 9 Unmodified _IPIILQSAL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2;ENST00000466451.1_1_10:12199921-12200143:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.3133850097656 2 484.312961 966.611368 0.25426 0.00012314 0.67734 0.00032805 0.9316 0.00045119 484.3132594500421 88.45 0.29855 88.503 88.354 88.652 0.053352 16 12 2 0 0 0 0.045537 1 49194 49194 46.921 0.89992 1 11163000 23699 801 16091 16395 27956 27956 0.12672692005139652 IPIIYWAGQ 9 Unmodified _IPIIYWAGQ_ 0 0 0 REV__ENSG00000175294|ENST00000312106|CATSPER1 REV__ENSG00000175294|ENST00000312106|CATSPER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7942504882812 2 530.794935 1059.57532 NaN NaN NaN NaN NaN NaN NaN 21.721 1 21.744 21.244 22.244 0.022896 0 0 0 0.6032 1 11031 11031 12.532 0.89125 1 + 23700 22861 16092 16396 27957 27957 0.04791234828257984 IPIKAICDY 9 Carbamidomethyl (C) _IPIKAIC(Carbamidomethyl (C))DY_ IPIKAIC(1)DY IPIKAIC(46)DY 0 1 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.792236328125 2 546.791535 1091.56852 0.64243 0.00035127 -2.301 -0.0012581 -1.6585 -0.00090687 546.7909742631431 54.628 0.33569 48.762 48.641 48.977 -5.8653 52 20 4 0 0 0 0.047788 1 34713 34713 45.7 26.338 1 32174000 23701 6155;16276;16275 16093 16397 27958 27958 615 0.026395538853876133 IPIKFFQAI 9 Unmodified _IPIKFFQAI_ 0 0 0 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.82958984375 2 538.828778 1075.643 1.1851 0.00063857 -0.1001 -5.3936E-05 1.085 0.00058463 538.8286492235825 91.755 0.4445 91.791 91.614 92.058 0.036499 34 15 3 0 0 0 0.40476 1 51020 51020 12.532 12.532 1 14302000 + 23702 19255 16094 16398 27959 27959 0.10820684759096366 IPIKFFQAI 9 Unmodified _IPIKFFQAI_ 0 0 0 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 538.828778 1075.643 1.1851 0.00063857 -0.1001 -5.3936E-05 1.085 0.00058463 538.8286492235825 91.755 0.4445 91.791 91.614 92.058 0.036499 0 0 NaN 12.532 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 14302000 + 23703 19255 16094 16398 0.10820684759096366 IPILHDDS 8 Unmodified _IPILHDDS_ 0 0 0 REV__ENSG00000153898|ENST00000370608|MCOLN2 REV__ENSG00000153898|ENST00000370608|MCOLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 909.4674072265625 1 909.467623 908.460347 0.056472 5.1359E-05 1.2686 0.0011538 1.3251 0.0012052 909.4688689448459 78.486 0.38779 78.486 78.291 78.679 0 22 18 2 0 0 0 0.72953 1 43592 43592 14.582 1.0738 1 588430 + 23704 21193 16095 16399 27960 27960 0.002455056264693667 IPILQHLKY 9 Unmodified _IPILQHLKY_ 0 0 0 nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.842529296875 2 562.844959 1123.67537 NaN NaN NaN NaN NaN NaN NaN 103.56 1 103.51 103.01 104.01 -0.047928 0 0 0 0.84737 1 57514 57514 1.8442 0.51471 1 23705 5537 16096 16400 27961 27961 0.11847472162071426 IPILQHLKY 9 Unmodified _IPILQHLKY_ 0 0 0 nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.3104858398438 2 562.844959 1123.67537 0.92223 0.00051907 -0.055234 -3.1088E-05 0.867 0.00048798 562.8450152367358 93.706 0.22186 87.53 87.348 87.57 -6.1757 18 12 2 0 0 0 0.19613 1 61918 61918 7.9102 1.187 1 8174800 23706 5537 16096 16400 27962 27962 0.11847472162071426 IPILSLDWLH 10 Unmodified _IPILSLDWLH_ 0 0 0 nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;nc|ENSG00000137337|Q14676-4|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8451538085938 2 603.847699 1205.68084 NaN NaN NaN NaN NaN NaN NaN 52.188 1 52.129 51.629 52.629 -0.058918 0 0 0 0.91523 1 28266 28266 7.2892 1.0834 1 23707 4924 16097 16401 27963 27963 0.08623150953872027 IPILTKRE 8 Unmodified _IPILTKRE_ 0 0 0 REV__ENST00000264161.8_1_2:136678131-136680437:-|nuORF REV__ENST00000264161.8_1_2:136678131-136680437:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3087768554688 2 485.30821 968.601866 0.96802 0.00046979 -0.56464 -0.00027403 0.40338 0.00019576 485.307695135865 64.438 0.32971 64.428 64.276 64.606 -0.010536 39 16 3 0 0 0 0.44629 1 35275 35275 39.957 0.0076237 1 8065200 + 23708 25060 16098 16402 27964 27964 0.11630923719610564 IPILYEHQL 9 Unmodified _IPILYEHQL_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8201904296875 2 563.318774 1124.623 0.18594 0.00010474 -0.27452 -0.00015464 -0.088577 -4.9897E-05 563.3184552522255 60.369 0.24327 59.878 59.766 60.009 -0.49079 19 11 2 0 0 0 0.0090524 1 32867 32867 85.642 43.802 1 5887400 23709 3315 16099 16403 27965 27965 0.06566889028476908 IPIPSGKNY 9 Unmodified _IPIPSGKNY_ 0 0 0 nc|ENSG00000103978|Q8NBN3-2|TMEM87A;ENST00000562946.5_1_15:42519884-42565596:-|nuORF;ENSG00000103978|ENST00000389834|TMEM87A nc|ENSG00000103978|Q8NBN3-2|TMEM87A nc|ENSG00000103978|Q8NBN3-2|TMEM87A MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7779541015625 2 494.776742 987.538931 0.85402 0.00042255 0.33812 0.0001673 1.1921 0.00058985 494.77674575716134 42.969 0.22748 38.284 38.125 38.353 -4.6846 21 14 2 0 0 0 0.039985 1 26002 26002 49.933 13.889 1 9703500 23710 2168 16100 16404 27966 27966 0.0446635793156247 IPIPSTGSVEM 11 Oxidation (M) _IPIPSTGSVEM(Oxidation (M))_ IPIPSTGSVEM(1) IPIPSTGSVEM(76) 0 0 1 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.789794921875 2 573.789189 1145.56383 0.82737 0.00047474 -0.48083 -0.00027589 0.34654 0.00019884 573.789189152394 47.822 0.42734 47.822 47.623 48.051 0 57 20 4 0 0 0 0.0047291 2 26253 26145;26253 75.761 48.132 1 12561000 23711 7436 16101 16405 27967;27968 27968 1280 -0.003133750480174058 IPIPSTGSVEM 11 Oxidation (M) _IPIPSTGSVEM(Oxidation (M))_ IPIPSTGSVEM(1) IPIPSTGSVEM(50) 0 0 1 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7881469726562 2 573.789189 1145.56383 0.6557 0.00037623 -2.7203 -0.0015609 -2.0647 -0.0011847 573.7875132441388 48.228 0.46357 47.875 47.595 48.058 -0.3526 51 23 3 0 0 0 0.054439 2 25815 25815;25923 49.933 23.049 1 14126000 23712 7436 16101 16405 27969;27970 27969 1280 -0.003133750480174058 IPIPSTGSVEM 11 Oxidation (M) _IPIPSTGSVEM(Oxidation (M))_ IPIPSTGSVEM(1) IPIPSTGSVEM(50) 0 0 1 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7899169921875 2 573.789189 1145.56383 0.8593 0.00049306 0.18202 0.00010444 1.0413 0.0005975 573.7894468683982 55.704 0.48501 49.783 49.573 50.058 -5.9211 53 28 2 0 0 0 0.054439 1 35559 35559 49.933 28.396 1 32399000 23713 7436 16101 16405 27971 27971 1280 -0.003133750480174058 IPIPSTGSVEM 11 Unmodified _IPIPSTGSVEM_ 0 0 0 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.79443359375 2 565.791732 1129.56891 NaN NaN NaN NaN NaN NaN NaN 62.955 1 62.469 61.969 62.969 -0.48617 0 0 0 0.51453 1 34327 34327 24.021 12.38 1 23714 7436 16101 16406 27972 27972 0.009309288145914252 IPIPSTGSVEM 11 Unmodified _IPIPSTGSVEM_ 0 0 0 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MSMS AL20221201_MKP_PDAC_01 4 565.7919921875 2 565.791732 1129.56891 NaN NaN NaN NaN NaN NaN NaN 70.092 1 63.916 63.416 64.416 -6.1757 0 0 0 0.049352 1 45786 45786 62.573 30.267 1 23715 7436 16101 16406 27973 27973 0.009309288145914252 IPIPSTGSVEM 11 Unmodified _IPIPSTGSVEM_ 0 0 0 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1;ENST00000563135.5_1_15:41146443-41149170:+|nuORF nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MSMS AL20221201_MKP_PDAC_01 4 565.79248046875 2 565.791732 1129.56891 NaN NaN NaN NaN NaN NaN NaN 70.274 1 64.099 63.599 64.599 -6.1757 0 0 0 0.01198 1 45916 45916 74.929 18.752 1 23716 7436 16101 16406 27974 27974 0.009309288145914252 IPIPTLKDF 9 Unmodified _IPIPTLKDF_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7660522460938 2 522.310418 1042.60628 -0.10483 -5.4755E-05 -0.72211 -0.00037717 -0.82695 -0.00043192 522.3100845025505 76.584 0.32127 76.105 75.955 76.276 -0.47945 27 22 2 0 0 0 0.19891 1 41999 41999 11.64 3.047 1 1386800 23717 5065 16102 16407 27975 27975 0.08668388142518779 IPIPTLKDF 9 Unmodified _IPIPTLKDF_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3112182617188 2 522.310418 1042.60628 0.10458 5.4623E-05 -0.4683 -0.0002446 -0.36372 -0.00018997 522.3101327113077 76.003 0.4587 76.051 75.84 76.299 0.047943 34 19 2 0 0 0 0.047788 2 41909 41909;42017 45.7 9.5726 1 9331900 23718 5065 16102 16407 27976;27977 27976 0.08668388142518779 IPIPTLKDF 9 Unmodified _IPIPTLKDF_ 0 0 0 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 ENSG00000138594|ENST00000308580|TMOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.312255859375 2 522.310418 1042.60628 0.91434 0.00047757 0.62106 0.00032439 1.5354 0.00080196 522.3106610526316 91.287 0.89088 85.111 84.659 85.55 -6.1757 104 50 3 0 0 0 0.036857 3 60437 60188;60314;60437 51.63 7.7914 1 22449000 23719 5065 16102 16407 27978;27979;27980 27980 0.08668388142518779 IPIRVGRGSL 10 Unmodified _IPIRVGRGSL_ 0 0 0 ENST00000263097.8_1_19:1037929-1038361:+|nuORF ENST00000263097.8_1_19:1037929-1038361:+|nuORF ENST00000263097.8_1_19:1037929-1038361:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5616455078125 3 356.560981 1066.66111 1.5207 0.00054223 0.30607 0.00010913 1.8268 0.00065136 356.56116278979215 22.113 0.45876 19.378 19.122 19.581 -2.7348 59 25 3 0 0 0 0.49559 1 11837 11837 16.566 1.3174 1 19975000 23720 11281 16103 16408 27981 27981 0.1304481973379552 IPISAQLKY 9 Unmodified _IPISAQLKY_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8087158203125 2 516.808042 1031.60153 1.3008 0.00067226 -0.74516 -0.0003851 0.55563 0.00028715 516.8074834686589 49.945 0.30287 49.896 49.683 49.986 -0.048824 24 14 2 0 0 0 0.023481 1 26984 26984 60.074 20.124 1 4719100 23721 4251 16104 16409 27982 27982 0.08699503999741864 IPISAQLKY 9 Unmodified _IPISAQLKY_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8082275390625 2 516.808042 1031.60153 0.35483 0.00018338 0.83333 0.00043067 1.1882 0.00061406 516.8086031948873 55.948 0.31702 50.026 49.878 50.195 -5.9211 30 18 2 0 0 0 0.008513 1 35719 35719 99.755 54.056 1 24937000 23722 4251 16104 16409 27983 27983 0.08699503999741864 IPISIVAY 8 Unmodified _IPISIVAY_ 0 0 0 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.5239868164062 1 875.523682 874.516405 0.8054 0.00070514 0.43338 0.00037943 1.2388 0.0010846 875.5239856809219 80.371 0.36449 74.195 74.004 74.369 -6.1757 31 20 2 0 0 0 0.13235 2 52658 52658;52780 90.836 0 1 15210000 23723 3438 16105 16410 27984;27985 27984 0.07412758533951092 IPISLHTSL 9 Unmodified _IPISLHTSL_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7924499511719 2 490.792392 979.570232 0.42847 0.00021029 -0.1195 -5.8649E-05 0.30897 0.00015164 490.7923837075867 58.293 0.36449 57.803 57.618 57.982 -0.49079 45 17 3 0 0 0 0.0026776 2 31748 31645;31748 128.37 46.752 1 25561000 23724 16627 16106 16411 27986;27987 27987 0.07962930965663872 IPISLHTSL 9 Unmodified _IPISLHTSL_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7925720214844 2 490.792392 979.570232 1.1076 0.00054362 -0.86801 -0.00042601 0.23963 0.00011761 490.79188902370663 57.916 0.45736 57.85 57.634 58.091 -0.066032 62 22 4 0 0 0 0.0083938 2 31519 31519;31620 108 40.653 1 36365000 23725 16627 16106 16411 27988;27989 27988 0.07962930965663872 IPISLHTSL 9 Unmodified _IPISLHTSL_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.793212890625 2 490.792392 979.570232 1.329 0.00065228 0.18395 9.0281E-05 1.513 0.00074256 490.7923598326837 64.028 1.1442 57.852 57.306 58.45 -6.1757 148 62 4 0 0 0 0.0031966 3 41374 41374;41508;41654 125.62 40.268 1 131150000 23726 16627 16106 16411 27990;27991;27992 27990 0.07962930965663872 IPISLVSF 8 Unmodified _IPISLVSF_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.5244140625 1 875.523682 874.516405 0.048279 4.2269E-05 1.7153 0.0015018 1.7636 0.0015441 875.5251916531274 72.883 0.35338 72.407 72.23 72.583 -0.47588 35 15 3 0 0 0 0.41521 1 39833 39833 42.968 0 1 1812100 23727 2676 16107 16412 27993 27993 0.0741275853396246 IPITDRRSTF 10 Unmodified _IPITDRRSTF_ 0 0 0 nc|ENSG00000154059|Q9P2X3-2|IMPACT;ENSG00000154059|ENST00000284202|IMPACT nc|ENSG00000154059|Q9P2X3-2|IMPACT nc|ENSG00000154059|Q9P2X3-2|IMPACT MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5597229003906 3 402.559417 1204.65642 1.0144 0.00040836 0.40789 0.0001642 1.4223 0.00057255 402.55935514352257 36.799 0.31021 32.516 32.371 32.682 -4.2835 36 18 3 0 0 0 0.32072 2 21550 21461;21550 17.863 2.2872 1 5397900 23728 6292 16108 16413 27994;27995 27995 0.06227890800369096 IPITPSIFSL 10 Unmodified _IPITPSIFSL_ 0 0 0 REV__ENST00000402742.1_1_6:85996357-85996766:+|nuORF REV__ENST00000402742.1_1_6:85996357-85996766:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7840576171875 2 544.323525 1086.6325 0.7607 0.00041407 0.36613 0.00019929 1.1268 0.00061336 544.8254732783886 48.279 0.42565 43.045 42.821 43.247 -5.2339 54 25 3 0 0 0 0.22811 1 30025 30025 14.838 7.549 1 21943000 + 23729 26618 16109 16414 27996 27996 0.09264657313997304 IPITSNTLIYY 11 Unmodified _IPITSNTLIYY_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.35498046875 2 649.355554 1296.69655 0.36586 0.00023757 -0.44098 -0.00028635 -0.075125 -4.8783E-05 649.8568732664785 77.392 0.38347 77.442 77.221 77.605 0.05011 39 15 3 0 0 0 0.019459 1 42705 42705 57.722 42.474 1 4898000 23730 2328 16110 16415 27997 27997 0.06007392680294288 IPITSNTLIYY 11 Unmodified _IPITSNTLIYY_ 0 0 0 nc|ENSG00000105483|Q9Y2G2-3|CARD8;nc|ENSG00000105483|Q9Y2G2-4|CARD8;ENSG00000105483|ENST00000651546|CARD8;nc|ENSG00000105483|Q9Y2G2-2|CARD8;ENST00000377461.8_1_19:48718626-48735356:-|nuORF;ENST00000517510.5_1_19:48707456-48744240:-|nuORF;ENST00000522773.5_1_19:48714969-48736545:-|nuORF;nc|ENSG00000105483|Q9Y2G2-7|CARD8;ENST00000522051.5_1_19:48714969-48735770:-|nuORF;nc|ENSG00000105483|Q9Y2G2-1|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 nc|ENSG00000105483|Q9Y2G2-3|CARD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.3558959960938 2 649.355554 1296.69655 0.204 0.00013247 2.3078 0.0014986 2.5118 0.001631 649.858577616464 85.529 0.29961 79.353 79.196 79.495 -6.1757 28 17 2 0 0 0 0.178 1 56365 56365 33.445 13.03 1 18498000 23731 2328 16110 16415 27998 27998 0.06007392680294288 IPIVYNNPF 9 Unmodified _IPIVYNNPF_ 0 0 0 REV__ENSG00000156463|ENST00000359120|SH3RF2 REV__ENSG00000156463|ENST00000359120|SH3RF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3196411132812 2 538.792392 1075.57023 0.41295 0.00022249 -1.454 -0.00078341 -1.0411 -0.00056092 538.791640474103 67.582 0.15778 67.1 67.031 67.189 -0.48219 9 6 2 0 0 0 0.20528 1 36909 36909 4.756 0 1 937250 + 23732 21331 16111 16416 27999 27999 0.03546930965649153 IPIWGTLIQY 10 Unmodified _IPIWGTLIQY_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000513757.5_1_5:1479693-1494872:-|nuORF;ENST00000507282.1_1_5:1488500-1495016:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.34375 2 602.342249 1202.66995 2.7846 0.0016773 -1.7039 -0.0010263 1.0807 0.00065095 602.3412119965016 99.773 0.10461 99.736 99.666 99.771 -0.036301 12 3 4 0 0 0 0.031389 1 55424 55424 67.344 25.249 1 13369000 23733 6262 16112 16417 28000 28000 0.07671748579628002 IPIWGTLIQY 10 Unmodified _IPIWGTLIQY_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000513757.5_1_5:1479693-1494872:-|nuORF;ENST00000507282.1_1_5:1488500-1495016:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3416137695312 2 602.342249 1202.66995 0.93442 0.00056284 -1.2483 -0.00075188 -0.31383 -0.00018903 602.3418942359286 100.96 0.20852 94.786 94.623 94.831 -6.1757 24 12 3 0 0 0 0.017458 1 67646 67646 77.984 35.89 1 105810000 23734 6262 16112 16417 28001 28001 0.07671748579628002 IPIYADKDVF 10 Unmodified _IPIYADKDVF_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.815673828125 2 590.816064 1179.61758 0.24238 0.0001432 -0.60651 -0.00035833 -0.36413 -0.00021513 590.8155860529905 59.38 0.36238 59.38 59.192 59.555 0 43 15 4 0 0 0 0.061704 2 33038 33038;33146 55.235 17.261 1 10886000 23735 8926 16113 16418 28002;28003 28002 0.03495165445974635 IPIYADKDVF 10 Unmodified _IPIYADKDVF_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8157348632812 2 590.816064 1179.61758 0.19698 0.00011638 -0.75293 -0.00044484 -0.55595 -0.00032846 590.8156093139661 60.01 0.35956 59.519 59.293 59.652 -0.49079 32 17 2 0 0 0 0.047829 2 32598 32598;32700 59.368 19.419 1 16306000 23736 8926 16113 16418 28004;28005 28004 0.03495165445974635 IPIYADKDVF 10 Unmodified _IPIYADKDVF_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8161010742188 2 590.816064 1179.61758 0.24696 0.00014591 -0.18648 -0.00011018 0.060481 3.5733E-05 590.8160335012875 59.604 0.19492 59.551 59.42 59.614 -0.053062 17 9 2 0 0 0 0.17253 1 32486 32486 37.075 6.4381 1 3057600 23737 8926 16113 16418 28006 28006 0.03495165445974635 IPIYADKDVF 10 Unmodified _IPIYADKDVF_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8165893554688 2 590.816064 1179.61758 0.43265 0.00025562 -0.23304 -0.00013768 0.19961 0.00011793 590.8158930950397 65.772 0.77966 59.596 59.398 60.177 -6.1757 75 45 2 0 0 0 0.027278 2 42790 42790;42949 69.338 9.2643 1 35886000 23738 8926 16113 16418 28007;28008 28007 0.03495165445974635 IPKAEQSVAY 10 Unmodified _IPKAEQSVAY_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2991333007812 2 553.298039 1104.58152 0.021662 1.1986E-05 1.14 0.00063078 1.1617 0.00064277 553.298387464001 29.435 0.1818 29.435 29.308 29.489 0 17 8 3 0 0 0 0.10874 1 15243 15243 51.415 22.334 1 2326000 23739 1587 16114 16419 28009 28009 0.033417082691585165 IPKAEQSVAY 10 Unmodified _IPKAEQSVAY_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2985229492188 2 553.298039 1104.58152 1.3383 0.0007405 1.0601 0.00058656 2.3985 0.0013271 553.2987245396843 33.667 0.32205 29.681 29.572 29.894 -3.9853 33 17 3 0 0 0 0.05292 1 19365 19365 65.474 21.615 1 7735400 23740 1587 16114 16419 28010 28010 0.033417082691585165 IPKDNRLYL 9 Unmodified _IPKDNRLYL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.888916015625 3 377.888874 1130.64479 -0.010567 -3.9931E-06 0.026226 9.9104E-06 0.015659 5.9173E-06 377.88882591642647 38.987 0.28744 38.7 38.475 38.763 -0.28687 21 12 2 0 0 0 0.39143 1 20513 20513 12.873 5.7709 1 2248700 23741 9257 16115 16420 28011 28011 0.08469693777033172 IPKDYKTMTAL 11 Unmodified _IPKDYKTMTAL_ 0 0 0 ENSG00000188191|ENST00000537384|PRKAR1B ENSG00000188191|ENST00000537384|PRKAR1B ENSG00000188191|ENST00000537384|PRKAR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5693359375 3 427.568813 1279.68461 0.72049 0.00030806 -0.19939 -8.5254E-05 0.5211 0.0002228 427.5687515160479 43.996 0.39602 39.231 38.985 39.381 -4.7648 60 25 3 0 0 0 0.36533 1 26705 26705 23.34 9.821 1 24747000 23742 9639 16116 16421 28012 28012 0.055954526654659276 IPKEDSTTF 9 Unmodified _IPKEDSTTF_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7 ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2605590820312 2 519.261122 1036.50769 -0.32261 -0.00016752 0.85406 0.00044348 0.53145 0.00027596 519.2617341879995 29.896 0.35965 29.896 29.76 30.12 0 55 19 4 0 0 0 0.029718 1 15466 15466 55.503 9.4818 1 10430000 23743 4794 16117 16422 28013 28013 -0.00910259893203147 IPKELIVQF 9 Unmodified _IPKELIVQF_ 0 0 0 REV__nc|ENSG00000067606|Q05513-2|PRKCZ REV__nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3123779296875 2 543.831517 1085.64848 0.28764 0.00015643 2.3658 0.0012866 2.6534 0.001443 543.832464628998 74.355 0.17759 74.399 74.279 74.456 0.043983 10 7 2 0 0 0 0.21242 1 40966 40966 5.2307 0 1 661240 + 23744 17422 16118 16423 28014 28014 0.10908363550902322 IPKELKKDLHC 11 Unmodified _IPKELKKDLHC_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.373291015625 2 662.376297 1322.73804 -0.053429 -3.539E-05 -2.6008 -0.0017227 -2.6543 -0.0017581 662.3750053652199 99.765 0.11473 93.589 93.508 93.623 -6.1757 11 7 2 0 0 0 0.50515 1 66552 66552 16.149 1.3108 1 37255000 23745 3590 16119 16424 28015 28015 0.08958250167961523 IPKGEELTY 9 Unmodified _IPKGEELTY_ 0 0 0 ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D ENSG00000167548|ENST00000301067|KMT2D ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2811279296875 2 525.279315 1048.54408 -0.052906 -2.779E-05 2.2456 0.0011796 2.1927 0.0011518 525.2809199030658 35.175 0.23093 35.175 35.034 35.265 0 17 11 2 0 0 0 0.11784 1 18593 18593 31.268 2.1868 1 1778800 23746 7628 16120 16425 28016 28016 0.02174617003538515 IPKHLTDAY 9 Unmodified _IPKHLTDAY_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2867431640625 2 529.287474 1056.5604 -0.44916 -0.00023774 -0.4726 -0.00025014 -0.92176 -0.00048788 529.2868249895071 28.153 0.17682 28.153 28.074 28.251 0 17 8 3 0 0 0 0.21643 1 14530 14530 21.537 7.6309 1 1571700 23747 1507 16121 16426 28017 28017 0.034377429602727716 IPKHLTDAY 9 Unmodified _IPKHLTDAY_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.2736206054688 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 31.769 1 28.073 27.573 28.573 -3.6958 0 0 0 0.049786 1 18022 18022 57.722 25.416 1 23748 1507 16121 16426 28018 28018 0.034377429602727716 IPKHLTDAY 9 Unmodified _IPKHLTDAY_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.287841796875 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 31.835 1 28.139 27.639 28.639 -3.6958 0 0 0 0.054801 1 18067 18067 55.503 23.197 1 23749 1507 16121 16426 28019 28019 0.034377429602727716 IPKKATDGHPR 11 Unmodified _IPKKATDGHPR_ 0 0 0 REV__ENST00000523788.1_1_8:63942724-63951327:-|nuORF REV__ENST00000523788.1_1_8:63942724-63951327:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.2354125976562 3 407.235045 1218.6833 NaN NaN NaN NaN NaN NaN NaN 48.939 1 43.542 43.042 44.042 -5.3961 0 0 0 0.91362 1 30523 30523 6.6235 0.43161 1 + 23750 20249 16122 16427 28020 28020 0.08270999411524826 IPKKHISQI 9 Unmodified _IPKKHISQI_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3345947265625 2 532.334759 1062.65496 0.57673 0.00030701 -0.21853 -0.00011633 0.3582 0.00019068 532.3345502509515 18.098 0.22054 15.476 15.328 15.548 -2.6215 26 16 2 0 0 0 0.012228 1 9463 9463 74.2 23.345 1 3156200 23751 7885 16123 16428 28021 28021 0.12614301502276248 IPKNPYQYKF 10 Unmodified _IPKNPYQYKF_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.8502197265625 2 649.350606 1296.68666 -0.028176 -1.8296E-05 -0.93763 -0.00060885 -0.9658 -0.00062714 649.3501562487914 92.058 0.31468 92.058 91.918 92.233 0 43 17 3 0 0 0 0.71276 1 50961 50961 1.4819 0 1 1557300 23752 6514 16124 16429 28022 28022 0.050182494655246046 IPKPLNPAL 9 Unmodified _IPKPLNPAL_ 0 0 0 ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.8064270019531 2 481.805303 961.596052 0.69483 0.00033477 0.50444 0.00024304 1.1993 0.00057782 481.8055154693701 47.523 0.21526 47.485 47.385 47.6 -0.038643 21 9 3 0 0 0 0.070838 1 25597 25597 39.957 3.9131 1 5087200 23753 7516 16125 16430 28023 28023 0.11371825207925212 IPKPLNPAL 9 Unmodified _IPKPLNPAL_ 0 0 0 ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.8054809570312 2 481.805303 961.596052 0.98962 0.0004768 0.041077 1.9791E-05 1.0307 0.00049659 481.8049852988492 53.497 0.30302 47.692 47.498 47.801 -5.8042 33 19 2 0 0 0 0.0095811 1 33744 33744 81.613 20.256 1 23443000 23754 7516 16125 16430 28024 28024 0.11371825207925212 IPKPLNPAL 9 Unmodified _IPKPLNPAL_ 0 0 0 ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP ENSG00000166619|ENST00000373537|BLCAP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 481.805303 961.596052 0.7025 0.00033847 -0.51934 -0.00025022 0.18316 8.825E-05 481.8050346419223 47.853 0.18835 47.5 47.367 47.555 -0.3526 -0.058819 -0.00065513 NaN 81.613 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4377600 23755 7516 16125 16430 0.11371825207925212 IPKQVSISF 9 Unmodified _IPKQVSISF_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3;ENST00000473909.5_1_3:160939100-160952664:+|nuORF ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8009948730469 2 509.800217 1017.58588 0.4951 0.0002524 0.96685 0.0004929 1.4619 0.0007453 509.80063584987414 54.625 0.32385 54.558 54.422 54.746 -0.066936 45 15 4 0 0 0 0.012668 1 29666 29666 72.968 12.894 1 17254000 23756 7858 16126 16431 28025 28025 0.07779217482720924 IPKQVSISF 9 Unmodified _IPKQVSISF_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3;ENST00000473909.5_1_3:160939100-160952664:+|nuORF ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8021545410156 2 509.800217 1017.58588 0.88208 0.00044969 0.58429 0.00029787 1.4664 0.00074756 509.8005722721042 60.498 0.48715 54.35 54.125 54.612 -6.1478 56 25 3 0 0 0 0.017075 2 38880 38880;39002 66.457 12.624 1 62127000 23757 7858 16126 16431 28026;28027 28026 0.07779217482720924 IPKRFYYI 8 Unmodified _IPKRFYYI_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5537719726562 3 367.21481 1098.6226 1.8489 0.00067896 -3.6506 -0.0013406 -1.8017 -0.0006616 367.21320449936593 37.431 0.82188 33.148 32.765 33.587 -4.2835 186 49 7 0 0 0 0.77907 2 22222 22098;22222 7.2892 3.4129 1 271140000 + 23758 21838 16127 16432 28028;28029 28029 0.07723514099257045 IPKSAVGTL 9 Unmodified _IPKSAVGTL_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2740478515625 2 443.273835 884.533118 0.38174 0.00016921 0.7485 0.00033179 1.1302 0.00050101 443.27419298964554 39.892 0.33153 35.362 35.188 35.52 -4.5294 38 24 2 0 0 0 0.012668 1 23743 23743 72.968 14.289 1 35582000 23759 6050 16128 16433 28030 28030 0.08623259419891838 IPKSAVGTL 9 Unmodified _IPKSAVGTL_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 443.273835 884.533118 -0.15984 -7.0851E-05 -0.40031 -0.00017745 -0.56015 -0.0002483 443.2735235268715 35.243 0.19544 35.243 35.146 35.342 0 -0.0016895 -0.00050688 NaN 72.968 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3317800 23760 6050 16128 16433 0.08623259419891838 IPKSAVGTL 9 Unmodified _IPKSAVGTL_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.273835 884.533118 -0.426 -0.00018883 0.17584 7.7947E-05 -0.25015 -0.00011089 443.2738851601477 35.352 0.24445 35.129 35.001 35.245 -0.2224 -0.11564 3.9047E-06 NaN 72.968 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2516300 23761 6050 16128 16433 0.08623259419891838 IPKSSDPEM 9 Unmodified _IPKSSDPEM_ 0 0 0 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 MSMS AL20221201_MKP_PDAC_01 4 502.2439270019531 2 502.241875 1002.4692 NaN NaN NaN NaN NaN NaN NaN 25.431 1 22.548 22.048 23.048 -2.8831 0 0 0 0.091025 1 13926 13926 45.7 15.063 1 23762 976 16129 16434 28031 28031 -0.03193888799364686 IPKVAVEVF 9 Unmodified _IPKVAVEVF_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.3063049316406 2 501.305136 1000.59572 0.38667 0.00019384 2.1357 0.0010706 2.5224 0.0012645 501.306299970889 64.223 0.2313 63.738 63.613 63.844 -0.48512 17 10 2 0 0 0 0.19127 1 35052 35052 24.021 5.8742 1 909640 23763 315 16130 16435 28032 28032 0.09544405488088614 IPKVEWSAF 9 Unmodified _IPKVEWSAF_ 0 0 0 nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112 nc|ENSG00000173113|Q9UI30-2|TRMT112 nc|ENSG00000173113|Q9UI30-2|TRMT112 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7927856445312 2 538.792392 1075.57023 0.56838 0.00030624 0.47409 0.00025543 1.0425 0.00056167 538.7925403591216 67.091 0.3189 67.109 66.939 67.258 0.018028 28 15 2 0 0 0 0.029718 1 36798 36798 55.503 26.421 1 5532400 23764 8287 16131 16436 28033 28033 0.03546930965649153 IPKVSTKL 8 Unmodified _IPKVSTKL_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MSMS AL20221201_MKP_PDAC_01 4 443.2922058105469 2 443.292028 884.569503 NaN NaN NaN NaN NaN NaN NaN 23.791 1 20.963 20.463 21.463 -2.8273 0 0 0 0.54148 1 12900 12900 37.974 7.3375 1 23765 6950 16132 16437 28034 28034 0.12260136316592707 IPLALEGKDLL 11 Unmodified _IPLALEGKDLL_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3617553710938 2 591.360639 1180.70673 0.72818 0.00043062 -0.74926 -0.00044308 -0.02108 -1.2466E-05 591.3600491085612 74.341 0.48827 73.865 73.667 74.155 -0.47588 50 20 3 0 0 0 0.011162 2 40658 40658;40756 79.427 27.797 1 4978000 23766 4810 16133 16438 28035;28036 28035 0.12360000405510618 IPLALEGKDLL 11 Unmodified _IPLALEGKDLL_ 0 0 0 nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 nc|ENSG00000136271|Q9NY93-2|DDX56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3609008789062 2 591.360639 1180.70673 0.90971 0.00053796 -0.0237 -1.4015E-05 0.88601 0.00052395 591.3606606791052 88.567 0.63104 82.391 82.132 82.763 -6.1757 54 34 2 0 0 0 2.8549E-06 2 58334 58334;58460 114.5 44.302 1 15676000 23767 4810 16133 16438 28037;28038 28037 0.12360000405510618 IPLAPPDFPS 10 Unmodified _IPLAPPDFPS_ 0 0 0 REV__ENST00000487891.1_1_3:49020199-49020700:+|nuORF REV__ENST00000487891.1_1_3:49020199-49020700:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.285400390625 2 527.2844 1052.55425 NaN NaN NaN NaN NaN NaN NaN 88.95 1 88.446 87.946 88.946 -0.50423 0 0 0 0.8671 1 48640 48640 9.3831 3.1773 1 + 23768 27835 16134 16439 28039 28039 0.030072247287534992 IPLARRYIL 9 Unmodified _IPLARRYIL_ 0 0 0 REV__ENSG00000254656|ENST00000649591|RTL1 REV__ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.241943359375 3 372.241359 1113.70225 1.7416 0.00064828 -0.42855 -0.00015952 1.313 0.00048876 372.24121278866045 94.054 0.5228 87.878 87.663 88.186 -6.1757 66 29 3 0 0 0 0.10247 2 62240 62240;62367 32.786 6.5175 1 11969000 + 23769 24526 16135 16440 28040;28041 28040 0.14994580773281996 IPLCDEDGY 9 Unmodified _IPLCDEDGY_ 0 0 0 nc|ENSG00000196104|Q9BQ16-7|SPOCK3;nc|ENSG00000196104|Q9BQ16-5|SPOCK3;nc|ENSG00000196104|Q9BQ16-6|SPOCK3;nc|ENSG00000196104|Q9BQ16-4|SPOCK3;nc|ENSG00000196104|Q9BQ16-8|SPOCK3;ENSG00000196104|ENST00000357545|SPOCK3;nc|ENSG00000196104|Q9BQ16|SPOCK3 nc|ENSG00000196104|Q9BQ16-7|SPOCK3 nc|ENSG00000196104|Q9BQ16-7|SPOCK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7183837890625 2 512.718233 1023.42191 0.56503 0.0002897 -1.5726 -0.00080629 -1.0075 -0.00051659 512.7173334391161 53.676 0.37033 53.676 53.506 53.876 0 27 17 2 0 0 0 0.46577 1 29731 29731 9.3474 2.0582 1 3405600 23770 9760 16136 16441 28042 28042 -0.0888616807036442 IPLDAAAAYY 10 Unmodified _IPLDAAAAYY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2738037109375 2 534.274032 1066.53351 NaN NaN NaN NaN NaN NaN NaN 82.417 1 82.417 81.917 82.917 0 0 0 0 0.7417 1 45724 45724 14.838 0 1 23771 9828 16137 16442 28043 28043 0.002906343490622021 IPLDAAAAYYL 11 Unmodified _IPLDAAAAYYL_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8161010742188 2 590.816064 1179.61758 0.43265 0.00025562 -0.23304 -0.00013768 0.19961 0.00011793 590.8158930950397 65.772 0.77966 59.596 59.398 60.177 -6.1757 75 45 2 0 0 0 0.088077 1 42652 42652 43.858 0.085901 1 35886000 23772 9828 16138 16443 28044 28044 0.03495165445974635 IPLDDPTLLF 10 Unmodified _IPLDDPTLLF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3198852539062 2 572.31844 1142.62233 0.36979 0.00021164 1.1353 0.00064975 1.5051 0.00086139 572.3192418971422 99.122 0.30376 99.122 98.989 99.292 0 24 10 3 0 0 0 0.33553 1 54715 54715 25.399 4.9457 1 2339800 23773 1569 16139 16444 28045 28045 0.05672049588747541 IPLDDPTLLF 10 Unmodified _IPLDDPTLLF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.31884765625 2 572.31844 1142.62233 0.50089 0.00028667 0.24496 0.0001402 0.74585 0.00042686 572.3185635074672 99.28 0.35046 99.103 98.958 99.308 -0.17726 36 11 4 0 0 0 0.092434 1 54186 54186 48.346 21.462 1 15135000 23774 1569 16139 16444 28046 28046 0.05672049588747541 IPLDDPTLLF 10 Unmodified _IPLDDPTLLF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.322265625 2 572.31844 1142.62233 4.2991 0.0024605 0.24573 0.00014064 4.5448 0.0026011 572.3185766697776 99.127 0.24179 99.098 98.975 99.216 -0.028282 16 8 2 0 0 0 0.1028 1 55090 55090 46.021 19.137 1 3006300 23775 1569 16139 16444 28047 28047 0.05672049588747541 IPLDDPTLLF 10 Unmodified _IPLDDPTLLF_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3192138671875 2 572.31844 1142.62233 1.5775 0.00090282 0.21862 0.00012512 1.7961 0.0010279 572.3184837406948 100.98 0.20567 94.807 94.701 94.907 -6.1757 29 11 3 0 0 0 0.051739 2 67645 67629;67645 57.471 28.985 1 203680000 23776 1569 16139 16444 28048;28049 28049 0.05672049588747541 IPLDFPGSF 9 Unmodified _IPLDFPGSF_ 0 0 0 nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5099487304688 1 992.50876 991.501483 0.22236 0.00022069 -0.2517 -0.00024982 -0.029341 -2.9121E-05 992.5084495420147 102.04 0.10829 101.92 101.85 101.96 -0.11613 9 4 3 0 0 0 0.48152 1 55679 55679 8.5933 8.5933 1 1174500 23777 8632 16140 16445 28050 28050 0.005392666659531642 IPLDFPGSF 9 Unmodified _IPLDFPGSF_ 0 0 0 nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7588195800781 2 496.758018 991.501483 1.2306 0.00061131 -0.14955 -7.4291E-05 1.0811 0.00053702 496.7581282655553 102.55 0.11853 96.379 96.306 96.424 -6.1757 21 15 2 0 0 0 0.37804 1 68817 68817 13.508 13.508 1 9211600 23778 8632 16140 16445 28051 28051 0.005392666659531642 IPLDFPGSF 9 Unmodified _IPLDFPGSF_ 0 0 0 nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR nc|ENSG00000176909|Q6ZN01-3|MAMSTR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 992.50876 991.501483 0.22236 0.00022069 -0.2517 -0.00024982 -0.029341 -2.9121E-05 992.5084495420147 102.04 0.10829 101.92 101.85 101.96 -0.11613 0 0 NaN 8.5933 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1174500 23779 8632 16140 16445 0.005392666659531642 IPLDFSSSL 9 Unmodified _IPLDFSSSL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;nc|ENSG00000138119|Q9NZM1-4|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7597961425781 2 489.760758 977.506963 0.26763 0.00013108 -1.669 -0.00081743 -1.4014 -0.00068635 489.75966828313534 75.397 0.27165 75.397 75.275 75.547 0 19 11 2 0 0 0 0.32871 1 41949 41949 15.847 1.2655 1 598430 23780 5021 16141 16446 28052 28052 0.01730945457757116 IPLDFSSSL 9 Unmodified _IPLDFSSSL_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF;nc|ENSG00000138119|Q9NZM1-4|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5169067382812 1 978.514239 977.506963 -0.69908 -0.00068406 2.1297 0.002084 1.4306 0.0013999 978.5165338990242 78.14 0.24061 77.657 77.562 77.803 -0.4826 16 10 2 0 0 0 0.016184 1 42794 42794 67.344 16.489 1 983760 23781 5021 16141 16446 28053 28053 0.01730945457757116 IPLDPVAGY 9 Unmodified _IPLDPVAGY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 944.5093994140625 1 944.50876 943.501483 -0.31406 -0.00029663 2.5583 0.0024163 2.2442 0.0021197 944.5100492072759 65.382 0.25514 65.382 65.219 65.475 0 14 9 2 0 0 0 0.095405 1 36432 36432 34.102 10.954 1 605760 + 23782 168 16142 16447 28054 28054 0.02747266665949155 IPLEKSLEL 9 Unmodified _IPLEKSLEL_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.31298828125 2 521.313158 1040.61176 0.59873 0.00031212 -0.4957 -0.00025842 0.10303 5.371E-05 521.312879236097 59.512 0.36346 59.512 59.329 59.693 0 43 15 4 0 0 0 0.017075 1 33119 33119 66.457 5.0992 1 11086000 23783 9372 16143 16448 28055 28055 0.09308066934318049 IPLEKSLEL 9 Unmodified _IPLEKSLEL_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3137817382812 2 521.313158 1040.61176 0.049676 2.5897E-05 1.6262 0.00084777 1.6759 0.00087367 521.3140754282053 76.991 0.37297 77.041 76.848 77.221 0.050102 31 15 3 0 0 0 0.08691 1 42480 42480 36.127 0 1 5231900 23784 9372 16143 16448 28056 28056 0.09308066934318049 IPLEKSLEL 9 Unmodified _IPLEKSLEL_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 521.313158 1040.61176 0.33245 0.00017331 -1.3888 -0.00072402 -1.0564 -0.00055071 521.311998483807 65.671 0.50182 59.495 59.285 59.787 -6.1757 0.0012084 -0.00077532 NaN 66.457 62 29 3 NaN NaN NaN NaN 0 NaN NaN 0 41512000 23785 9372 16143 16448 0.09308066934318049 IPLENLIAF 9 Unmodified _IPLENLIAF_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.2562255859375 2 515.302593 1028.59063 1.2571 0.00064776 0.32521 0.00016758 1.5823 0.00081534 515.3026497612706 101.12 0.17638 94.943 94.798 94.974 -6.1757 13 9 2 0 0 0 0.1474 1 67692 67692 28.487 14.979 1 29194000 23786 9979 16144 16449 28057 28057 0.07748101625475101 IPLESINLY 9 Unmodified _IPLESINLY_ 0 0 0 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2978515625 2 531.297507 1060.58046 1.0648 0.00056575 0.66653 0.00035413 1.7314 0.00091988 531.7997711790263 60.624 0.52492 54.476 54.142 54.667 -6.1478 42 27 2 0 0 0 0.044011 1 38994 38994 47.749 0.1543 1 17778000 + 23787 21676 16145 16450 28058 28058 0.05259493900234702 IPLFETQPTY 10 Unmodified _IPLFETQPTY_ 0 0 0 nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1 nc|ENSG00000125686|Q15648-3|MED1 nc|ENSG00000125686|Q15648-3|MED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.81884765625 2 604.813522 1207.61249 0.5622 0.00034003 1.33 0.00080438 1.8922 0.0011444 604.814478195865 72.271 0.34628 71.795 71.572 71.918 -0.47609 35 15 3 0 0 0 0.043729 2 39502 39502;39581 61.357 34.474 1 2385900 23788 3870 16146 16451 28059;28060 28059 0.016988615833724907 IPLFETQPTY 10 Unmodified _IPLFETQPTY_ 0 0 0 nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1 nc|ENSG00000125686|Q15648-3|MED1 nc|ENSG00000125686|Q15648-3|MED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8110961914062 2 604.813522 1207.61249 0.60497 0.0003659 -2.8319 -0.0017128 -2.2269 -0.0013469 604.8118032021488 79.994 0.35617 73.819 73.586 73.942 -6.1757 27 21 2 0 0 0 0.037795 1 52422 52422 64.236 29.304 1 12503000 23789 3870 16146 16451 28061 28061 0.016988615833724907 IPLFVQLLY 9 Unmodified _IPLFVQLLY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000465552.1_1_3:41275683-41277995:+|nuORF;ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000173801|ENST00000393931|JUP;ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3372802734375 2 553.336436 1104.65832 0.83885 0.00046417 -0.18235 -0.0001009 0.6565 0.00036326 553.3363510349288 102.08 0.12466 95.906 95.833 95.957 -6.1757 8 5 2 0 0 0 0.05447 1 68519 68519 49.669 11.518 1 9974800 23790 8363;7707 16147 16452 28062 28062 0.11017551556301441 IPLGEIISF 9 Unmodified _IPLGEIISF_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7881469726562 2 494.789318 987.564084 0.5113 0.00025299 -1.9641 -0.00097182 -1.4528 -0.00071883 494.78836944520333 97.821 0.25127 97.579 97.413 97.664 -0.24277 21 12 2 0 0 0 0.019979 1 53374 53374 63.563 9.9873 1 8761600 23791 2233 16148 16453 28063 28063 0.06980412734151287 IPLGEIISF 9 Unmodified _IPLGEIISF_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7887878417969 2 494.789318 987.564084 NaN NaN NaN NaN NaN NaN NaN 97.925 1 97.682 97.182 98.182 -0.24277 0 0 0 0.46757 1 53483 53483 16.942 1.0951 1 23792 2233 16148 16453 28064 28064 0.06980412734151287 IPLGEIISF 9 Unmodified _IPLGEIISF_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 988.5734252929688 1 988.57136 987.564084 3.3234 0.0032855 -3.7432 -0.0037004 -0.41979 -0.00041499 988.5680975727348 97.416 0.19288 97.398 97.299 97.492 -0.018188 9 6 2 0 0 0 0.016184 1 54133 54133 67.344 5.9864 1 7096000 23793 2233 16148 16453 28065 28065 0.06980412734151287 IPLGEIISF 9 Unmodified _IPLGEIISF_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.789794921875 2 494.789318 987.564084 0.55112 0.00027269 0.52535 0.00025994 1.0765 0.00053263 494.7893579328044 100.6 0.16968 94.424 94.345 94.515 -6.1757 32 11 4 0 0 0 0.019979 1 67298 67298 63.563 9.9873 1 353000000 23794 2233 16148 16453 28066 28066 0.06980412734151287 IPLGESGLSF 10 Unmodified _IPLGESGLSF_ 0 0 0 REV__ENSG00000170802|ENST00000340553|FOXN2 REV__ENSG00000170802|ENST00000340553|FOXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2745666503906 2 510.274032 1018.53351 0.30408 0.00015517 0.14859 7.5823E-05 0.45268 0.00023099 510.27407025019124 37.282 0.29179 37.282 37.117 37.409 0 24 14 3 0 0 0 0.043729 1 19798 19798 61.357 2.6787 1 4276700 + 23795 22511 16149 16454 28067 28067 0.024986343491036678 IPLGMPPPLVM 11 Unmodified _IPLGMPPPLVM_ 0 0 0 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.832275390625 2 582.829606 1163.64466 1.1655 0.00067931 2.3826 0.0013887 3.5482 0.002068 582.8309805511744 52.667 0.24211 52.609 52.466 52.708 -0.058918 26 11 3 0 0 0 0.39552 1 28535 28535 21.747 4.8044 1 2661700 23796 8912 16150 16455 28068 28068 0.06938234461131287 IPLHFSTAF 9 Unmodified _IPLHFSTAF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7799682617188 2 516.779285 1031.54402 0.57827 0.00029884 -1.6566 -0.0008561 -1.0783 -0.00055726 516.7792262473062 68.276 0.3713 68.302 68.108 68.479 0.025146 48 18 4 0 0 0 0.012158 2 37558 37454;37558 74.396 29.989 1 21775000 23797 12680 16151 16456 28069;28070 28070 0.029506617941933655 IPLHFSTAF 9 Unmodified _IPLHFSTAF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7803955078125 2 516.779285 1031.54402 1.1165 0.00057696 2.4747 0.0012789 3.5911 0.0018558 516.7807395706722 81.618 0.50436 75.443 75.133 75.637 -6.1757 43 28 2 0 0 0 0.019979 1 53491 53491 63.563 19.156 1 10130000 23798 12680 16151 16456 28071 28071 0.029506617941933655 IPLHFSTAF 9 Unmodified _IPLHFSTAF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7828369140625 2 516.779285 1031.54402 0.71185 0.00036787 0.94052 0.00048604 1.6524 0.00085391 516.7798234855727 81.884 0.56831 75.708 75.497 76.066 -6.1757 44 31 2 0 0 0 0.03327 1 53626 53626 53.576 15.424 1 11092000 23799 12680 16151 16456 28072 28072 0.029506617941933655 IPLHLAAQY 9 Unmodified _IPLHLAAQY_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2935180664062 2 513.292559 1024.57057 0.37691 0.00019346 0.46535 0.00023886 0.84226 0.00043233 513.2928070882725 52.585 0.25645 52.151 52.023 52.279 -0.43367 30 12 3 0 0 0 0.040472 1 28414 28414 49.669 11.518 1 16727000 23800 8674 16152 16457 28073 28073 0.05926350685513171 IPLHLAAQY 9 Unmodified _IPLHLAAQY_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.293701171875 2 513.292559 1024.57057 0.84089 0.00043162 -0.095265 -4.8899E-05 0.74563 0.00038273 513.2925973072565 52.289 0.26057 52.23 52.067 52.328 -0.058918 30 12 3 0 0 0 0.016494 1 28287 28287 67.035 28.884 1 9381900 23801 8674 16152 16457 28074 28074 0.05926350685513171 IPLHLAAQY 9 Unmodified _IPLHLAAQY_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2926025390625 2 513.292559 1024.57057 1.0043 0.00051552 0.4552 0.00023365 1.4595 0.00074917 513.292738588632 58.282 0.68311 52.208 52 52.683 -6.0745 101 37 3 0 0 0 0.016494 2 37296 37296;37422 67.035 28.884 1 75388000 23802 8674 16152 16457 28075;28076 28075 0.05926350685513171 IPLHNACSF 9 Carbamidomethyl (C) _IPLHNAC(Carbamidomethyl (C))SF_ IPLHNAC(1)SF IPLHNAC(86)SF 0 1 0 ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7587280273438 2 529.758027 1057.5015 0.58939 0.00031223 0.12239 6.4839E-05 0.71178 0.00037707 529.7578481321187 43.891 0.40061 39.126 38.888 39.289 -4.7648 54 25 3 0 0 0 0.0090524 1 26775 26775 85.642 33.373 1 18916000 23803 8309;2522 16153 16458 28077 28077 254 -0.02495056605721402 IPLHNEDAF 9 Unmodified _IPLHNEDAF_ 0 0 0 nc|ENSG00000198929|O75052-3|NOS1AP;ENSG00000198929|ENST00000361897|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP nc|ENSG00000198929|O75052-3|NOS1AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.260009765625 2 528.261456 1054.50836 0.21008 0.00011098 -0.58008 -0.00030643 -0.37 -0.00019546 528.2611174712971 40.342 0.40163 40.342 40.089 40.491 0 30 19 2 0 0 0 0.028475 1 21628 21628 56.177 27.69 1 3934700 23804 10200 16154 16459 28078 28078 -0.016714204534764576 IPLHPLITY 9 Unmodified _IPLHPLITY_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8201293945312 2 533.81841 1065.62227 NaN NaN NaN NaN NaN NaN NaN 64.517 1 64.506 64.006 65.006 -0.010529 0 0 0 0.0071568 1 35331 35331 98.807 64.62 1 23805 9979 16155 16460 28079 28079 0.0920809437943717 IPLHQINQVY 10 Unmodified _IPLHQINQVY_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000464787.1_1_3:33434031-33437792:-|nuORF;ENST00000466441.5_1_3:33431825-33437792:-|nuORF;ENST00000492136.1_1_3:33434749-33437792:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8409423828125 2 612.840405 1223.66626 0.72823 0.00044629 0.11524 7.0626E-05 0.84347 0.00051692 612.8404333604424 46.892 0.2563 46.556 46.404 46.661 -0.33664 33 12 3 0 0 0 0.1028 1 25108 25108 46.021 25.606 1 20212000 23806 6267 16156 16461 28080 28080 0.06337078805768215 IPLHQINQVY 10 Unmodified _IPLHQINQVY_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000464787.1_1_3:33434031-33437792:-|nuORF;ENST00000466441.5_1_3:33431825-33437792:-|nuORF;ENST00000492136.1_1_3:33434749-33437792:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8436889648438 2 612.840405 1223.66626 1.5225 0.00093308 0.21071 0.00012913 1.7333 0.0010622 612.8406514728537 46.62 0.24032 46.587 46.472 46.712 -0.033421 33 11 4 0 0 0 0.063761 1 25063 25063 54.774 39.525 1 10148000 23807 6267 16156 16461 28081 28081 0.06337078805768215 IPLHQINQVY 10 Unmodified _IPLHQINQVY_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000464787.1_1_3:33434031-33437792:-|nuORF;ENST00000466441.5_1_3:33431825-33437792:-|nuORF;ENST00000492136.1_1_3:33434749-33437792:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8408203125 2 612.840405 1223.66626 0.90726 0.00055601 -0.030433 -1.865E-05 0.87683 0.00053736 612.8402299090066 52.718 0.39003 46.984 46.764 47.155 -5.7345 54 21 3 0 0 0 0.063761 2 33331 33212;33331 54.774 36.627 1 97011000 23808 6267 16156 16461 28082;28083 28083 0.06337078805768215 IPLHVFVLL 9 Unmodified _IPLHVFVLL_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000436236.1_1_3:31638325-31661336:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.83935546875 2 525.839146 1049.66374 0.87289 0.000459 -0.042813 -2.2513E-05 0.83008 0.00043649 525.8387624064395 100.71 0.11158 94.535 94.459 94.57 -6.1757 12 7 2 0 0 0 0.028712 1 67417 67417 56.048 0 1 26155000 23809 7010 16157 16462 28084 28084 0.1408927513875824 IPLIMSVLY 9 Unmodified _IPLIMSVLY_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8111572265625 2 524.809196 1047.60384 0.84182 0.0004418 2.1426 0.0011244 2.9844 0.0015662 524.8123796815744 101.6 0.18758 95.423 95.274 95.461 -6.1757 18 9 3 0 0 0 0.12424 1 68193 68193 42.968 16.627 1 25722000 23810 4891 16158 16463 28085 28085 0.08194216413198774 IPLKDPLLF 9 Unmodified _IPLKDPLLF_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MSMS AL20221201_MKP_PDAC_01 4 528.3296508789062 2 528.328611 1054.64267 NaN NaN NaN NaN NaN NaN NaN 97.194 1 91.019 90.519 91.519 -6.1757 0 0 0 0.035688 1 64415 64415 63.961 2.6031 1 23811 2805 16159 16464 28086 28086 0.11753265039214966 IPLKHQVEY 9 Unmodified _IPLKHQVEY_ 0 0 0 nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;ENSG00000006611|ENST00000005226|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C MSMS AL20221201_MKP_PDAC_01 4 376.5482788085938 3 376.213358 1125.61824 NaN NaN NaN NaN NaN NaN NaN 30.933 1 27.436 26.936 27.936 -3.497 0 0 0 0.08368 1 17489 17489 47.594 3.2025 1 23812 16012 16160 16465 28087 28087 0.060460048857066795 IPLKIFEM 8 Unmodified _IPLKIFEM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7884521484375 2 495.788264 989.561975 1.3788 0.00068361 -0.17321 -8.5874E-05 1.2056 0.00059773 495.7882580901065 96.701 0.35382 90.525 90.354 90.708 -6.1757 43 20 3 0 0 0 0.44629 2 64160 64035;64160 39.957 13.764 1 28102000 23813 10128 16161 16466 28088;28089 28089 0.0667766072467657 IPLKVALFY 9 Unmodified _IPLKVALFY_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3319091796875 2 532.331153 1062.64775 1.3216 0.00070352 -1.1318 -0.00060248 0.18981 0.00010104 532.3305650507095 97.687 0.16804 91.512 91.384 91.553 -6.1757 18 9 2 0 0 0 0.022193 1 64689 64689 61.357 27.255 1 35117000 23814 1972 16162 16467 28090 28090 0.1189356890183717 IPLLGKSSL 9 Unmodified _IPLLGKSSL_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2979125976562 2 464.29731 926.580068 0.8208 0.0003811 0.47515 0.00022061 1.2959 0.00060171 464.29752885361273 57.46 0.31437 57.394 57.259 57.573 -0.066036 39 15 3 0 0 0 0.07087 1 31249 31249 39.95 7.6442 1 3611600 23815 6629 16163 16468 28091 28091 0.1138411897103424 IPLLGKSSL 9 Unmodified _IPLLGKSSL_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2985534667969 2 464.29731 926.580068 1.0852 0.00050383 0.28172 0.0001308 1.3669 0.00063463 464.2973835423119 63.698 0.43085 57.523 57.306 57.737 -6.1757 37 23 2 0 0 0 0.078314 1 41192 41192 38.176 5.8701 1 10661000 23816 6629 16163 16468 28092 28092 0.1138411897103424 IPLLICRTY 9 Carbamidomethyl (C) _IPLLIC(Carbamidomethyl (C))RTY_ IPLLIC(1)RTY IPLLIC(44)RTY 0 1 0 nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1;ENST00000567743.5_1_16:66851261-66857485:-|nuORF nc|ENSG00000159593|Q13564-3|NAE1 nc|ENSG00000159593|Q13564-3|NAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8314208984375 2 574.828452 1147.64235 0.99252 0.00057053 1.4025 0.0008062 2.395 0.0013767 574.829545074348 63.776 0.34801 63.765 63.59 63.938 -0.010532 49 16 4 0 0 0 0.05483 1 34872 34872 43.772 10.987 1 10407000 23817 6663 16164 16469 28093 28093 654 0.07443522047719853 IPLMRDRAL 9 Unmodified _IPLMRDRAL_ 0 0 0 nc|ENSG00000156030|Q6PJG2|MIDEAS;ENSG00000156030|ENST00000423556|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS nc|ENSG00000156030|Q6PJG2|MIDEAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.215087890625 3 362.214704 1083.62228 1.0269 0.00037197 0.52997 0.00019196 1.5569 0.00056393 362.2149464464877 45.344 0.19251 40.389 40.311 40.504 -4.9549 20 13 2 0 0 0 0.11005 1 27820 27820 32.037 9.3012 1 9174400 23818 6425 16165 16470 28094 28094 0.08381771107769964 IPLNEQTTL 9 Unmodified _IPLNEQTTL_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2691650390625 2 514.784764 1027.55498 0.3842 0.00019778 0.17679 9.1009E-05 0.56099 0.00028879 514.7846296895087 50.123 0.33587 50.123 49.946 50.282 0 21 15 2 0 0 0 0.18882 1 27576 27576 15.847 3.3156 1 1500300 23819 5571 16166 16471 28095 28095 0.04230019377791905 IPLNNYLVF 9 Unmodified _IPLNNYLVF_ 0 0 0 nc|ENSG00000144744|Q8TBC4-2|UBA3;ENSG00000144744|ENST00000361055|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 nc|ENSG00000144744|Q8TBC4-2|UBA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8102416992188 2 546.808042 1091.60153 1.9723 0.0010785 0.92198 0.00050415 2.8943 0.0015826 546.8087482575047 94.232 0.38081 94.246 94.083 94.464 0.014244 28 13 3 0 0 0 0.045537 1 52382 52382 46.921 22.247 1 2092800 23820 5640 16167 16472 28096 28096 0.0593950399975256 IPLPFYLGF 9 Unmodified _IPLPFYLGF_ 0 0 0 ENST00000298569.8_1_5:175774508-175774583:-|nuORF ENST00000298569.8_1_5:175774508-175774583:-|nuORF ENST00000298569.8_1_5:175774508-175774583:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8057861328125 2 533.802229 1065.5899 0.9799 0.00052307 2.4935 0.0013311 3.4734 0.0018541 533.8038037497813 38.035 0.61416 33.666 33.286 33.9 -4.3689 95 36 4 0 0 0 0.1492 1 22444 22444 28.173 5.0248 1 74297000 23821 11536 16168 16473 28097 28097 0.05973306976420645 IPLPHGTHAF 10 Unmodified _IPLPHGTHAF_ 0 0 0 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8656921386719 3 363.866181 1088.57671 0.053703 1.9541E-05 0.1767 6.4295E-05 0.2304 8.3836E-05 363.86599498958566 41.285 0.27058 40.982 40.776 41.047 -0.30304 27 12 3 0 0 0 0.19662 1 21845 21845 28.495 21.393 1 3097000 23822 5199 16169 16474 28098 28098 0.03596868917043139 IPLPHGTHAF 10 Unmodified _IPLPHGTHAF_ 0 0 0 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8661193847656 3 363.866181 1088.57671 0.21451 7.8052E-05 0.54161 0.00019707 0.75612 0.00027513 363.86617934402454 40.919 0.3233 40.918 40.752 41.075 -0.0017891 40 15 4 0 0 0 0.14917 1 21816 21816 33.445 33.445 1 6567800 23823 5199 16169 16474 28099 28099 0.03596868917043139 IPLPHGTHAF 10 Unmodified _IPLPHGTHAF_ 0 0 0 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 ENSG00000139946|ENST00000267460|PELI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8656311035156 3 363.866181 1088.57671 1.4109 0.0005134 -1.0328 -0.00037581 0.37812 0.00013759 363.8657819979341 45.666 0.36635 40.711 40.541 40.908 -4.9549 43 24 2 0 0 0 0.19662 1 28140 28140 22.658 14.503 1 25786000 23824 5199 16169 16474 28100 28100 0.03596868917043139 IPLPHGTHTF 10 Unmodified _IPLPHGTHTF_ 0 0 0 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8695678710938 3 373.869703 1118.58728 0.070116 2.6214E-05 -0.65468 -0.00024477 -0.58457 -0.00021855 373.8697682013366 39.854 0.38443 39.557 39.351 39.735 -0.29716 40 18 3 0 0 0 0.1028 1 21037 21037 32.037 22.494 1 4354800 23825 9942 16170 16475 28101 28101 0.032728515714552486 IPLPHGTHTF 10 Unmodified _IPLPHGTHTF_ 0 0 0 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8698425292969 3 373.869703 1118.58728 0.25833 9.6582E-05 -1.006 -0.0003761 -0.74765 -0.00027952 373.8697127829297 39.488 0.33092 39.5 39.303 39.634 0.011452 42 15 4 0 0 0 0.063761 1 21013 21013 38.615 23.658 1 9542900 23826 9942 16170 16475 28102 28102 0.032728515714552486 IPLPHGTHTF 10 Unmodified _IPLPHGTHTF_ 0 0 0 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 ENSG00000197329|ENST00000358912|PELI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8700561523438 3 373.869703 1118.58728 1.0943 0.00040911 0.61821 0.00023113 1.7125 0.00064024 373.8699790626738 44.265 0.47128 39.413 39.16 39.632 -4.852 77 33 3 0 0 0 0.063761 1 26935 26935 38.615 29.869 1 31752000 23827 9942 16170 16475 28103 28103 0.032728515714552486 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7913818359375 2 522.328611 1042.64267 0.2383 0.00012447 -0.049493 -2.5852E-05 0.18881 9.8619E-05 522.3287800390787 70.714 0.14708 70.237 70.161 70.308 -0.47735 10 7 2 0 0 0 0.18118 1 38662 38662 13.906 0 1 905780 23828 3704 16171 16476 28104 28104 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.32861328125 2 522.328611 1042.64267 0.32807 0.00017136 0.27425 0.00014325 0.60232 0.00031461 522.3286548907512 70.114 0.45995 70.15 69.941 70.401 0.035515 68 22 4 0 0 0 0.0094097 2 38515 38515;38627 82.529 18.293 1 63206000 23829 3704 16171 16476 28105;28106 28105 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3287353515625 2 522.328611 1042.64267 1.1201 0.00058504 -0.39764 -0.0002077 0.72241 0.00037734 522.328315853259 81.366 1.6194 75.19 74.424 76.044 -6.1757 189 91 3 0 0 0 0.012668 4 53734 53229;53359;53606;53734 72.968 11.701 1 38088000 23830 3704 16171 16476 28107;28108;28109;28110 28110 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3299560546875 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 79.267 1 73.092 72.592 73.592 -6.1757 0 0 0 0.049786 1 51934 51934 57.722 9.3761 1 23831 3704 16171 16476 28111 28111 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.32958984375 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 79.498 1 73.322 72.822 73.822 -6.1757 0 0 0 0.049786 1 52098 52098 57.722 9.3761 1 23832 3704 16171 16476 28112 28112 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3291625976562 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 79.694 1 73.518 73.018 74.018 -6.1757 0 0 0 0.0052483 1 52243 52243 103.35 28.931 1 23833 3704 16171 16476 28113 28113 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3296508789062 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 79.885 1 73.709 73.209 74.209 -6.1757 0 0 0 0.014715 1 52382 52382 85.642 11.219 1 23834 3704 16171 16476 28114 28114 0.12305265039231017 IPLPLIKSY 9 Unmodified _IPLPLIKSY_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3294067382812 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 80.429 1 74.253 73.753 74.753 -6.1757 0 0 0 0.076083 1 52769 52769 49.554 3.5333 1 23835 3704 16171 16476 28115 28115 0.12305265039231017 IPLPLIKSYLF 11 Unmodified _IPLPLIKSYLF_ 0 0 0 ENST00000556656.5_1_12:56361683-56365109:+|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENSG00000123374|ENST00000266970|CDK2;ENST00000554619.5_1_12:56361683-56363594:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF ENST00000556656.5_1_12:56361683-56365109:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.40576171875 2 652.40485 1302.79515 0.98656 0.00064364 0.35676 0.00023275 1.3433 0.00087639 652.4049491717279 100.49 0.10416 94.312 94.241 94.345 -6.1757 11 5 3 0 0 0 0.00076978 1 67206 67206 85.764 57.27 1 22721000 23836 3704 16172 16477 28116 28116 0.15586040715993477 IPLPLVKSL 9 Unmodified _IPLPLVKSL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.3314208984375 2 490.331153 978.647754 0.51348 0.00025178 0.61735 0.00030271 1.1308 0.00055448 490.33147490584395 75.313 0.2905 75.358 75.245 75.535 0.045959 30 13 3 0 0 0 0.040683 1 41523 41523 49.554 17.249 1 2933100 23837 4696 16173 16478 28117 28117 0.15757568901858576 IPLPLVKSL 9 Unmodified _IPLPLVKSL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MSMS AL20221201_MKP_PDAC_01 4 490.3306274414062 2 490.331153 978.647754 NaN NaN NaN NaN NaN NaN NaN 92.308 1 86.132 85.632 86.632 -6.1757 0 0 0 0.030047 1 61042 61042 66.457 22.598 1 23838 4696 16173 16478 28118 28118 0.15757568901858576 IPLQEKSF 8 Unmodified _IPLQEKSF_ 0 0 0 REV__nc|ENSG00000108064|Q00059-2|TFAM REV__nc|ENSG00000108064|Q00059-2|TFAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2715148925781 2 481.271293 960.528032 0.58425 0.00028118 -0.31342 -0.00015084 0.27083 0.00013034 481.27108066701567 87.659 0.31565 87.155 86.97 87.286 -0.50423 25 14 2 0 0 0 0.80143 1 48002 48002 5.7604 1.0044 1 609660 + 23839 18594 16174 16479 28119 28119 0.04618955557282334 IPLQETSLY 9 Unmodified _IPLQETSLY_ 0 0 0 nc|ENSG00000131238|P50897-2|PPT1;ENSG00000131238|ENST00000642050|PPT1 nc|ENSG00000131238|P50897-2|PPT1 nc|ENSG00000131238|P50897-2|PPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2870483398438 2 532.28714 1062.55973 1.165 0.00062012 1.3265 0.00070608 2.4915 0.0013262 532.2866775016457 86.311 0.66078 80.135 79.907 80.567 -6.1757 79 35 3 0 0 0 0.05447 1 56998 56998 43.858 3.9086 1 24164000 23840 4311 16175 16480 28120 28120 0.03094903520582193 IPLQKDKF 8 Unmodified _IPLQKDKF_ 0 0 0 ENST00000569448.1_1_16:8993400-8995074:-|nuORF ENST00000569448.1_1_16:8993400-8995074:-|nuORF ENST00000569448.1_1_16:8993400-8995074:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7954406738281 2 494.794935 987.575317 0.69158 0.00034219 0.062337 3.0844E-05 0.75391 0.00037303 494.7948274816721 66.398 0.82774 60.222 59.692 60.519 -6.1757 64 47 2 0 0 0 0.31612 1 43164 43164 53.576 0 1 12432000 23841 15457 16176 16481 28121 28121 0.08103234828274708 IPLRQLVY 8 Unmodified _IPLRQLVY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3116760253906 2 501.310752 1000.60695 0.18499 9.2739E-05 0.30257 0.00015168 0.48756 0.00024442 501.3108708402361 55.13 0.23824 55.062 54.96 55.198 -0.068737 23 11 3 0 0 0 0.31612 1 29953 29953 53.576 9.1686 1 4669700 23842 8367 16177 16482 28122 28122 0.10667227582223404 IPLRQVHP 8 Unmodified _IPLRQVHP_ 0 0 0 ENST00000534789.5_1_19:50838228-50848012:-|nuORF;ENST00000534096.5_1_19:50838046-50848012:-|nuORF ENST00000534789.5_1_19:50838228-50848012:-|nuORF ENST00000534789.5_1_19:50838228-50848012:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2930908203125 2 480.292894 958.571235 1.1268 0.00054117 -0.64695 -0.00031072 0.47981 0.00023045 480.2925162658409 38.043 0.39976 33.674 33.456 33.855 -4.3689 58 23 3 0 0 0 0.6895 1 22352 22352 18.135 0 1 52058000 23843 14946 16178 16483 28123 28123 0.0902919012522716 IPLRSSWVM 9 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ IPLRSSWVM(1) IPLRSSWVM(50) 0 0 1 ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1 ENSG00000172354|ENST00000303210|GNB2 ENSG00000172354|ENST00000303210|GNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7979125976562 2 552.797152 1103.57975 0.51856 0.00028666 0.29742 0.00016441 0.81599 0.00045108 552.7974514808586 48.016 0.37891 47.977 47.805 48.184 -0.038647 68 18 5 0 0 0 0.040683 1 25947 25947 49.554 27.808 1 48770000 23844 8205 16179 16484 28124 28124 1392 0.0321037597952909 IPLRSSWVM 9 Oxidation (M) _IPLRSSWVM(Oxidation (M))_ IPLRSSWVM(1) IPLRSSWVM(50) 0 0 1 ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1 ENSG00000172354|ENST00000303210|GNB2 ENSG00000172354|ENST00000303210|GNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7978515625 2 552.797152 1103.57975 1.2418 0.00068646 2.6339 0.001456 3.8757 0.0021425 552.7983744924753 53.924 0.59871 48.059 47.684 48.283 -5.8653 100 36 3 0 0 0 0.040683 1 34221 34221 49.554 21.06 1 89041000 23845 8205 16179 16484 28125 28125 1392 0.0321037597952909 IPLRSSWVM 9 Unmodified _IPLRSSWVM_ 0 0 0 ENSG00000172354|ENST00000303210|GNB2;nc|ENSG00000111664|P16520-2|GNB3;nc|ENSG00000078369|P62873-2|GNB1;ENSG00000114450|ENST00000232564|GNB4;ENSG00000111664|ENST00000229264|GNB3;ENSG00000078369|ENST00000378609|GNB1 ENSG00000172354|ENST00000303210|GNB2 ENSG00000172354|ENST00000303210|GNB2 MSMS AL20221201_MKP_PDAC_01 4 544.7979736328125 2 544.799694 1087.58484 NaN NaN NaN NaN NaN NaN NaN 66.711 1 60.536 60.036 61.036 -6.1757 0 0 0 0.27852 1 43405 43405 26.268 0.86883 1 23846 8205 16179 16485 28126 28126 0.04454679842137921 IPLSATSVSY 10 Unmodified _IPLSATSVSY_ 0 0 0 nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-4|ODR4;ENSG00000157181|ENST00000287859|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4 nc|ENSG00000157181|Q5SWX8-3|ODR4 nc|ENSG00000157181|Q5SWX8-3|ODR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.27978515625 2 519.279315 1036.54408 -0.042772 -2.221E-05 -0.054034 -2.8059E-05 -0.096806 -5.0269E-05 519.2789527784602 54.466 0.26089 54 53.921 54.182 -0.46664 23 13 2 0 0 0 0.31022 1 29587 29587 26.884 12.045 1 2537900 23847 6504 16180 16486 28127 28127 0.027266170035318282 IPLSEPCHL 9 Unmodified _IPLSEPCHL_ 0 0 0 REV__ENST00000434116.6_1_15:65903738-65903822:+|nuORF REV__ENST00000434116.6_1_15:65903738-65903822:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.764892578125 2 504.762778 1007.511 NaN NaN NaN NaN NaN NaN NaN 89.025 1 82.849 82.349 83.349 -6.1757 0 0 0 0.071041 1 58755 58755 50.855 10.898 1 + 23848 27007 16181 16487 28128 28128 0.007547116798264142 IPLSIIADM 9 Oxidation (M) _IPLSIIADM(Oxidation (M))_ IPLSIIADM(1) IPLSIIADM(78) 0 0 1 ENSG00000115084|ENST00000245680|SLC35F5;ENST00000470204.2_1_2:114476824-114486999:-|nuORF;ENST00000469702.5_1_2:114462911-114480749:-|nuORF ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7729187011719 2 494.772811 987.531069 0.59546 0.00029462 -0.39606 -0.00019596 0.1994 9.8659E-05 494.7726884724725 70.983 0.50787 70.506 70.308 70.816 -0.47735 38 22 2 0 0 0 0.010877 2 38792 38792;38901 77.984 16.627 1 1921300 23849 3083 16182 16488 28129;28130 28129 536 0.036804626197977086 IPLSIIADM 9 Unmodified _IPLSIIADM_ 0 0 0 ENSG00000115084|ENST00000245680|SLC35F5;ENST00000470204.2_1_2:114476824-114486999:-|nuORF;ENST00000469702.5_1_2:114462911-114480749:-|nuORF ENSG00000115084|ENST00000245680|SLC35F5 ENSG00000115084|ENST00000245680|SLC35F5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5464477539062 1 972.543431 971.536154 1.0595 0.0010304 2.1631 0.0021037 3.2226 0.0031341 972.5463937523286 100.06 0.074448 93.885 93.838 93.912 -6.1757 6 4 2 0 0 0 0.03568 1 66835 66835 52.268 2.3353 1 7253500 23850 3083 16182 16489 28131 28131 0.049247664824065396 IPLSLRVRY 9 Unmodified _IPLSLRVRY_ 0 0 0 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 ENSG00000156502|ENST00000359655|SUPV3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.9016723632812 3 372.901114 1115.68151 1.3583 0.00050652 -0.81641 -0.00030444 0.54191 0.00020208 372.90086784013323 50.292 0.26434 50.243 50.066 50.331 -0.048828 29 12 3 0 0 0 0.20507 1 27179 27179 22.658 3.0321 1 4129400 23851 6459 16183 16490 28132 28132 0.1282999039360675 IPLSWVNY 8 Unmodified _IPLSWVNY_ 0 0 0 REV__ENST00000521237.1_1_5:156849530-156849617:+|nuORF REV__ENST00000521237.1_1_5:156849530-156849617:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2665405273438 2 496.26601 990.517468 1.0317 0.000512 0.1196 5.9353E-05 1.1513 0.00057136 496.2663524905799 30.946 0.29007 27.449 27.23 27.52 -3.497 19 12 2 0 0 0 0.40035 1 17451 17451 44.407 0.63463 1 29154000 + 23852 28288 16184 16491 28133 28133 0.021829729028468137 IPLSYLADLTY 11 Unmodified _IPLSYLADLTY_ 0 0 0 ENST00000472644.6_3_3:105238940-105243229:+|nuORF ENST00000472644.6_3_3:105238940-105243229:+|nuORF ENST00000472644.6_3_3:105238940-105243229:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8418579101562 2 634.842279 1267.67001 1.172 0.00074403 -0.88236 -0.00056016 0.28962 0.00018386 634.8411326753425 96.628 0.304 90.452 90.37 90.674 -6.1757 26 17 2 0 0 0 0.064513 1 64050 64050 47.749 9.7747 1 7520300 23853 13911 16185 16492 28134 28134 0.04687703788931685 IPLTAEKLCIY 11 Carbamidomethyl (C) _IPLTAEKLC(Carbamidomethyl (C))IY_ IPLTAEKLC(1)IY IPLTAEKLC(55)IY 0 1 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8654174804688 2 660.865231 1319.71591 0.25806 0.00017054 -0.87579 -0.00057878 -0.61773 -0.00040824 660.8645041097093 65.328 0.25375 64.844 64.705 64.959 -0.48428 28 11 3 0 0 0 0.029988 1 35634 35634 55.235 40.829 1 4002300 23854 2702 16186 16493 28135 28135 276 0.06884025699537233 IPLTAEKLCIY 11 Carbamidomethyl (C) _IPLTAEKLC(Carbamidomethyl (C))IY_ IPLTAEKLC(1)IY IPLTAEKLC(95)IY 0 1 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8648681640625 2 660.865231 1319.71591 0.98475 0.00065079 -0.95165 -0.00062892 0.033093 2.187E-05 660.8645860573254 64.77 0.29988 64.77 64.616 64.916 7.6294E-06 32 14 3 0 0 0 5.2027E-06 1 35464 35464 94.909 62.123 1 6205400 23855 2702 16186 16493 28136 28136 276 0.06884025699537233 IPLTNDGKYVL 11 Unmodified _IPLTNDGKYVL_ 0 0 0 nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.847412109375 2 616.847896 1231.68124 0.54842 0.00033829 -0.54908 -0.0003387 -0.00065803 -4.059E-07 617.349080435953 57.127 0.55778 56.64 56.429 56.987 -0.48629 68 25 4 0 0 0 0.0030527 2 31102 31005;31102 78.61 21.503 1 9938500 23856 4779 16187 16494 28137;28138 28138 0.0746652588309189 IPLTNDGKYVL 11 Unmodified _IPLTNDGKYVL_ 0 0 0 nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.84765625 2 616.847896 1231.68124 0.6436 0.000397 -0.042813 -2.6409E-05 0.60078 0.00037059 616.8477083759491 63.128 0.6027 56.953 56.719 57.322 -6.1757 77 33 3 0 0 0 1.725E-06 3 40838 40710;40838;40992 102.55 37.622 1 35437000 23857 4779 16187 16494 28139;28140;28141 28140 0.0746652588309189 IPLTRLYVT 9 Unmodified _IPLTRLYVT_ 0 0 0 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 ENSG00000170255|ENST00000526914|MRGPRX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.581787109375 2 538.329142 1074.64373 0.56622 0.00030481 0.92024 0.00049539 1.4865 0.0008002 538.3299105162001 73.422 0.82365 72.946 72.295 73.118 -0.47588 62 36 4 0 0 0 0.19298 1 40052 40052 13.508 0.97634 1 6825600 23858 7964 16188 16495 28142 28142 0.1093947940810267 IPLVFQIMF 9 Unmodified _IPLVFQIMF_ 0 0 0 nc|ENSG00000171204|Q8IUX1-5|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B nc|ENSG00000171204|Q8IUX1-5|TMEM126B nc|ENSG00000171204|Q8IUX1-5|TMEM126B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.3184814453125 2 554.317189 1106.61982 1.192 0.00066076 -0.60197 -0.00033368 0.59006 0.00032708 554.820026369702 102.52 0.081139 96.344 96.316 96.397 -6.1757 17 8 3 0 0 0 0.16229 1 68814 68814 18.135 9.5417 1 2451100 23859 8076 16189 16496 28143 28143 0.07077922650114488 IPLYDKGDFIL 11 Unmodified _IPLYDKGDFIL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8610229492188 2 647.358096 1292.70164 0.94128 0.00060934 0.5131 0.00033216 1.4544 0.0009415 647.3582904265672 94.984 0.47775 88.808 88.642 89.12 -6.1757 56 26 3 0 0 0 0.0017085 1 62956 62956 80.896 45.963 1 16814000 23860 2113 16190 16497 28144 28144 0.06699696542909805 IPLYDMEATF 10 Unmodified _IPLYDMEATF_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MSMS AL20221201_MKP_PDAC_01 4 600.2860717773438 2 600.286282 1198.55801 NaN NaN NaN NaN NaN NaN NaN 93.615 1 87.439 86.939 87.939 -6.1757 0 0 0 0.79473 1 61974 61974 12.532 1.7076 1 23861 1171 16191 16498 28145 28145 -0.03332473559726168 IPMAAVKQAL 10 Oxidation (M) _IPM(Oxidation (M))AAVKQAL_ IPM(1)AAVKQAL IPM(56)AAVKQAL 0 0 1 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3082885742188 2 529.307352 1056.60015 -0.22553 -0.00011938 1.1739 0.00062137 0.9484 0.00050199 529.3081235029108 37.409 0.23835 37.137 36.992 37.23 -0.27133 23 9 3 0 0 0 0.0575 1 19645 19645 56.177 32.156 1 3625800 23862 8114 16192 16499 28146 28146 1374 0.074115466393323 IPMAAVKQAL 10 Oxidation (M) _IPM(Oxidation (M))AAVKQAL_ IPM(1)AAVKQAL IPM(75)AAVKQAL 0 0 1 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.30712890625 2 529.307352 1056.60015 -0.11601 -6.1406E-05 0.34477 0.00018249 0.22875 0.00012108 529.3076244571571 37.742 0.19392 37.47 37.35 37.544 -0.27133 14 8 2 0 0 0 0.020813 1 19825 19825 74.929 36.955 1 3265800 23863 8114 16192 16499 28147 28147 1374 0.074115466393323 IPMAAVKQAL 10 Unmodified _IPMAAVKQAL_ 0 0 0 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.3102416992188 2 521.309895 1040.60524 1.2372 0.00064495 -0.73095 -0.00038105 0.50623 0.0002639 521.3096540378816 55.175 0.42693 49.253 49.047 49.474 -5.9211 56 26 3 0 0 0 0.0032765 2 35031 35031;35206 103.75 50.173 1 34613000 23864 8114 16192 16500 28148;28149 28148 0.08655850501963869 IPMDDKLLY 9 Oxidation (M) _IPM(Oxidation (M))DDKLLY_ IPM(1)DDKLLY IPM(62)DDKLLY 0 0 1 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2885131835938 2 562.288825 1122.5631 0.7741 0.00043527 -2.6538 -0.0014922 -1.8797 -0.0010569 562.7887398154307 47.773 0.95811 47.773 47.212 48.17 0 134 45 4 0 0 0 0.021948 1 26033 26033 61.602 15.581 1 57658000 23865 9016 16193 16501 28150 28150 1510 0.006718303029174422 IPMDDKLLY 9 Oxidation (M) _IPM(Oxidation (M))DDKLLY_ 0 0 1 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 562.288825 1122.5631 0.67025 0.00037687 -1.1295 -0.0006351 -0.45923 -0.00025822 562.2892831415683 48.213 0.19328 47.861 47.79 47.984 -0.3526 0.044007 0.0013659 NaN 61.602 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2254300 23866 9016 16193 16501 1510 0.006718303029174422 IPMEEKRGWYF 11 Unmodified _IPMEEKRGWYF_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.9085388183594 3 485.907829 1454.70166 0.2013 9.7811E-05 0.57008 0.00027701 0.77138 0.00037482 486.24257047613713 55.434 0.29768 55.366 55.138 55.435 -0.068741 30 14 3 0 0 0 0.70147 1 30139 30139 4.1166 1.2733 1 2364100 23867 339 16194 16502 28151 28151 -0.007506267287226365 IPMEEKRGWYF 11 Unmodified _IPMEEKRGWYF_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.90771484375 3 485.907829 1454.70166 0.9109 0.00044261 0.37677 0.00018307 1.2877 0.00062569 485.90775370276316 77.91 0.15403 71.735 71.619 71.773 -6.1757 11 8 2 0 0 0 0.36533 1 50957 50957 23.34 17.937 1 14273000 23868 339 16194 16502 28152 28152 -0.007506267287226365 IPMEEKRGWYF 11 Unmodified _IPMEEKRGWYF_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2414855957031 3 485.907829 1454.70166 0.48186 0.00023414 0.42284 0.00020546 0.90471 0.0004396 485.9080341667169 78.304 0.71069 72.128 71.773 72.484 -6.1757 55 42 2 0 0 0 0.18957 3 51271 51146;51271;51277 32.616 22.852 1 22823000 23869 339 16194 16502 28153;28154;28155 28154 -0.007506267287226365 IPMEEKRGWYF 11 Unmodified _IPMEEKRGWYF_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.9097900390625 3 485.907829 1454.70166 0.79204 0.00038486 -1.4 -0.00068026 -0.60793 -0.0002954 486.2408008213019 77.632 0.15932 71.456 71.392 71.551 -6.1757 12 8 2 0 0 0 0.28171 1 50817 50817 16.838 12.432 1 10104000 23870 339 16194 16502 28156 28156 -0.007506267287226365 IPMEEKRGWYF 11 Unmodified _IPMEEKRGWYF_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 485.907829 1454.70166 0.33656 0.00016354 -0.0051376 -2.4964E-06 0.33142 0.00016104 485.9079215035748 55.733 0.20898 55.255 55.091 55.3 -0.47798 -0.055151 -0.00057422 NaN 4.1166 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 838500 23871 339 16194 16502 -0.007506267287226365 IPMELVNEVM 10 Unmodified _IPMELVNEVM_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7962646484375 2 587.79596 1173.57737 0.26429 0.00015535 0.63552 0.00037355 0.8998 0.0005289 587.7959894158995 92.986 0.56652 86.81 86.415 86.981 -6.1757 57 35 2 0 0 0 0.085354 1 61587 61587 49.933 24.534 1 19713000 23872 2602 16195 16503 28157 28157 -0.002478405404417572 IPMNIKNVI 9 Unmodified _IPMNIKNVI_ 0 0 0 ENST00000406845.1_1_21:24463107-24463425:-|nuORF ENST00000406845.1_1_21:24463107-24463425:-|nuORF ENST00000406845.1_1_21:24463107-24463425:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3104248046875 2 521.309895 1040.60524 0.51177 0.00026679 -0.40216 -0.00020965 0.10961 5.714E-05 521.3095502379882 49.361 0.18074 49.318 49.195 49.376 -0.04369 15 8 2 0 0 0 0.2001 1 26669 26669 23.148 1.4018 1 1367200 23873 12937 16196 16504 28158 28158 0.08655850501963869 IPMPGHPVNF 10 Oxidation (M) _IPM(Oxidation (M))PGHPVNF_ IPM(1)PGHPVNF IPM(61)PGHPVNF 0 0 1 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7 nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7800903320312 2 562.781502 1123.54845 NaN NaN NaN NaN NaN NaN NaN 45.506 1 45.182 44.682 45.682 -0.32425 0 0 0 0.034324 1 24314 24314 61.357 26.956 1 23874 9966 16197 16505 28159 28159 1610 -0.008381970545769946 IPMQSEPQY 9 Oxidation (M) _IPM(Oxidation (M))QSEPQY_ IPM(1)QSEPQY IPM(82)QSEPQY 0 0 1 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7510986328125 2 554.752607 1107.49066 0.84528 0.00046892 -1.5819 -0.00087757 -0.73663 -0.00040865 554.7518472351786 35.528 0.51909 31.335 31.094 31.613 -4.1928 59 32 2 0 0 0 0.009483 2 20610 20610;20752 81.89 31.957 1 12321000 23875 476 16198 16506 28160;28161 28160 65 -0.05878503770645693 IPMQSEPQY 9 Unmodified _IPMQSEPQY_ 0 0 0 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 ENSG00000013523|ENST00000251089|ANGEL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.8277587890625 2 546.755149 1091.49575 0.60047 0.00032831 3.5838 0.0019594 4.1842 0.0022877 547.2595700543641 45.943 0.57061 40.988 40.698 41.269 -4.9549 68 37 2 0 0 0 0.079233 1 28461 28461 36.127 15.673 1 49782000 23876 476 16198 16507 28162 28162 -0.04634199908014125 IPMRARMIHSL 11 Unmodified _IPMRARMIHSL_ 0 0 0 nc|ENSG00000117009|O15229-3|KMO;nc|ENSG00000117009|O15229-2|KMO;ENSG00000117009|ENST00000366559|KMO;ENST00000481087.1_1_1:241712984-241718974:+|nuORF nc|ENSG00000117009|O15229-3|KMO nc|ENSG00000117009|O15229-3|KMO MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2492370605469 3 442.249532 1323.72677 1.3186 0.00058315 -1.5869 -0.00070182 -0.26835 -0.00011868 442.2487173583899 21.051 0.22722 18.358 18.244 18.471 -2.693 23 12 3 0 0 0 0.30985 1 11239 11239 20.871 0.88424 1 2571500 23877 3277 16199 16508 28163 28163 0.07785149592837115 IPMSNLRDFP 10 Unmodified _IPMSNLRDFP_ 0 0 0 ENST00000602772.5_1_X:73289599-73289752:+|nuORF ENST00000602772.5_1_X:73289599-73289752:+|nuORF ENST00000602772.5_1_X:73289599-73289752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3031616210938 2 595.305341 1188.59613 0.47662 0.00028373 -2.1048 -0.001253 -1.6281 -0.00096924 595.3042774933748 68.822 0.62451 68.847 68.499 69.123 0.025146 100 29 5 0 0 0 0.60623 1 37721 37721 10.824 1.4408 1 22906000 23878 15824 16200 16509 28164 28164 0.00937457145641929 IPMSYSKL 8 Unmodified _IPMSYSKL_ 0 0 0 REV__nc|ENSG00000183814|Q5TKA1-3|LIN9 REV__nc|ENSG00000183814|Q5TKA1-3|LIN9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7538146972656 2 469.754421 937.494289 NaN NaN NaN NaN NaN NaN NaN 69.51 1 69.031 68.531 69.531 -0.47903 0 0 0 0.97348 1 37999 37999 5.7604 0 1 + 23879 23379 16201 16510 28165 28165 0.023042107938636036 IPMTHLVEDLL 11 Unmodified _IPMTHLVEDLL_ 0 0 0 REV__ENSG00000141646|ENST00000342988|SMAD4 REV__ENSG00000141646|ENST00000342988|SMAD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5694885253906 3 427.568813 1279.68461 0.72049 0.00030806 -0.19939 -8.5254E-05 0.5211 0.0002228 427.5687515160479 43.996 0.39602 39.231 38.985 39.381 -4.7648 60 25 3 0 0 0 0.60863 1 26842 26842 10.899 1.1347 1 24747000 + 23880 20548 16202 16511 28166 28166 0.055954526654659276 IPMTPTSSF 9 Unmodified _IPMTPTSSF_ 0 0 0 ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.4742431640625 1 980.475745 979.468469 1.0767 0.0010557 -0.4523 -0.00044347 0.62443 0.00061224 980.4747283524824 64.713 0.36874 58.537 58.315 58.684 -6.1757 29 20 2 0 0 0 9.7044E-15 2 41895 41895;42038 180.01 40.466 1 10649000 23881 7738 16203 16512 28167;28168 28167 -0.022086834484071005 IPMTPTSSF 9 Unmodified _IPMTPTSSF_ 0 0 0 ENSG00000168264|ENST00000366609|IRF2BP2;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 ENSG00000168264|ENST00000366609|IRF2BP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2905578613281 2 490.741511 979.468469 1.1232 0.00055122 -0.47097 -0.00023112 0.65227 0.0003201 490.7410049212458 64.69 0.52256 58.514 58.28 58.803 -6.1757 46 29 2 0 0 0 0.18118 1 41924 41924 12.532 0 1 30924000 23882 7738 16203 16512 28169 28169 -0.022086834484071005 IPNAKHVL 8 Unmodified _IPNAKHVL_ 0 0 0 REV__ENSG00000088325|ENST00000300403|TPX2 REV__ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2750854492188 2 446.27417 890.533787 0.84708 0.00037803 -0.081271 -3.6269E-05 0.76581 0.00034176 446.27407961099095 43.131 0.2103 38.366 38.18 38.39 -4.7648 23 13 2 0 0 0 0.6895 1 26028 26028 18.135 18.135 1 13439000 + 23883 17802 16204 16513 28170 28170 0.08414098859600472 IPNAYCNCMI 10 Unmodified _IPNAYCNCMI_ 0 0 0 ENST00000547994.5_1_12:56718022-56726878:-|nuORF;ENST00000551359.5_1_12:56713025-56726878:-|nuORF;ENSG00000135473|ENST00000440411|PAN2;nc|ENSG00000135473|Q504Q3-3|PAN2;nc|ENSG00000135473|Q504Q3|PAN2 ENST00000547994.5_1_12:56718022-56726878:-|nuORF ENST00000547994.5_1_12:56718022-56726878:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1667785644531 3 381.166146 1140.47661 0.093482 3.5632E-05 0.26712 0.00010182 0.3606 0.00013745 381.16627149734444 58.985 0.51545 58.985 58.677 59.192 0 34 22 2 0 0 0 0.69377 1 32792 32792 3.5871 0 1 1979400 23884 4711 16205 16514 28171 28171 -0.0880119579494476 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.298095703125 2 510.297842 1018.58113 0.6703 0.00034205 -0.55723 -0.00028436 0.11307 5.7699E-05 510.2974973617482 60.057 0.5259 60.057 59.819 60.345 0 76 23 5 0 0 0 0.0088174 2 33528 33419;33528 103.75 35.668 1 129740000 23885 1704 16206 16515 28172;28173 28173 0.07258333339939327 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2978210449219 2 510.297842 1018.58113 -0.24226 -0.00012362 -0.020656 -1.0541E-05 -0.26291 -0.00013416 510.2978717771147 60.459 0.66159 59.969 59.587 60.249 -0.49004 90 32 5 0 0 0 0.013041 1 32909 32909 71.922 13.243 1 249640000 23886 1704 16206 16515 28174 28174 0.07258333339939327 IPNEIIHAL 9 Unmodified _IPNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2980041503906 2 510.297842 1018.58113 0.18562 9.4723E-05 -0.24542 -0.00012524 -0.059802 -3.0517E-05 510.29772222527544 65.677 1.184 59.501 59.184 60.368 -6.1757 133 68 2 0 0 0 0.013041 6 42934 42482;42605;42800;42934;43071;43279 71.922 30.083 1 780480000 23887 1704 16206 16515 28175;28176;28177;28178;28179;28180 28178 0.07258333339939327 IPNENELQF 9 Unmodified _IPNENELQF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2726440429688 2 552.272021 1102.52949 0.46322 0.00025583 -0.77446 -0.00042771 -0.31124 -0.00017189 552.2720027420074 58.958 0.65627 58.958 58.606 59.262 0 106 28 6 0 0 0 0.018301 2 32944 32839;32944 65.235 41.214 1 35386000 23888 329 16207 16516 28181;28182 28182 -0.017674551446361875 IPNERTMQL 9 Unmodified _IPNERTMQL_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2933349609375 2 551.289691 1100.56483 0.49715 0.00027408 2.4723 0.001363 2.9695 0.001637 551.2906031833654 44.947 0.47826 40.095 39.863 40.342 -4.852 75 31 3 0 0 0 0.05483 2 27545 27412;27545 43.772 3.8227 1 36767000 23889 10571 16208 16517 28183;28184 28184 0.018568841115438772 IPNERTMQL 9 Oxidation (M) _IPNERTM(Oxidation (M))QL_ IPNERTM(1)QL IPNERTM(89)QL 0 0 1 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MSMS AL20221201_MKP_PDAC_01 4 559.2890014648438 2 559.287148 1116.55974 NaN NaN NaN NaN NaN NaN NaN 29.877 1 26.575 26.075 27.075 -3.3016 0 0 0 0.011986 1 16826 16826 89.401 35.825 1 23890 10571 16208 16518 28185 28185 1700 0.006125802489123089 IPNERTMQL 9 Oxidation (M) _IPNERTM(Oxidation (M))QL_ IPNERTM(1)QL IPNERTM(54)QL 0 0 1 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000471309.1_1_6:33231312-33232261:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MSMS AL20221201_MKP_PDAC_01 4 559.2882690429688 2 559.287148 1116.55974 NaN NaN NaN NaN NaN NaN NaN 30.201 1 26.704 26.204 27.204 -3.497 0 0 0 0.059498 1 17028 17028 53.833 9.9745 1 23891 10571 16208 16518 28186 28186 1700 0.006125802489123089 IPNFSTPSL 9 Unmodified _IPNFSTPSL_ 0 0 0 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 REV__nc|ENSG00000141576|Q96PX1-2|RNF157 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7693786621094 2 488.260925 974.507297 0.99478 0.00048571 3.8944 0.0019015 4.8892 0.0023872 488.2624333327975 50.285 0.10115 49.893 49.83 49.931 -0.3923 6 4 2 0 0 0 0.18118 1 27047 27047 12.532 4.6214 1 676250 + 23892 20546 16209 16519 28187 28187 0.019023651776365114 IPNFWVTTF 9 Unmodified _IPNFWVTTF_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.79345703125 2 562.792392 1123.57023 3.8042 0.002141 -0.63115 -0.00035521 3.173 0.0017858 562.7919758378752 99.58 0.1852 99.543 99.427 99.613 -0.036301 11 6 3 0 0 0 0.23158 1 55325 55325 20.454 8.8133 1 2056800 23893 3426 16210 16520 28188 28188 0.013389309656531623 IPNFWVTTF 9 Unmodified _IPNFWVTTF_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MSMS AL20221201_MKP_PDAC_01 4 562.7926025390625 2 562.792392 1123.57023 NaN NaN NaN NaN NaN NaN NaN 100.97 1 94.796 94.296 95.296 -6.1757 0 0 0 0.50124 1 67657 67657 15.847 1.0089 1 23894 3426 16210 16520 28189 28189 0.013389309656531623 IPNHYNPCQ 9 Unmodified _IPNHYNPCQ_ 0 0 0 ENST00000428040.6_1_6:30314274-30314612:+|nuORF ENST00000428040.6_1_6:30314274-30314612:+|nuORF ENST00000428040.6_1_6:30314274-30314612:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.4991760253906 3 362.499281 1084.47601 0.4405 0.00015968 0.15168 5.4984E-05 0.59218 0.00021467 362.49923448633865 57.154 0.28057 57.154 57.043 57.324 0 20 12 2 0 0 0 0.54444 1 31812 31812 2.7352 1.2801 1 1702300 23895 13204 16211 16521 28190 28190 -0.06284531128130766 IPNKEREL 8 Unmodified _IPNKEREL_ 0 0 0 REV__ENSG00000154007|ENST00000284142|ASB17 REV__ENSG00000154007|ENST00000284142|ASB17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.78564453125 2 499.785099 997.555644 0.75262 0.00037615 0.18573 9.2823E-05 0.93835 0.00046897 499.78548935378615 48.181 0.3581 42.947 42.711 43.069 -5.2339 35 21 2 0 0 0 0.38465 1 29922 29922 46.021 0.28107 1 10728000 + 23896 21203 16212 16522 28191 28191 0.05676858817525954 IPNKEREL 8 Unmodified _IPNKEREL_ 0 0 0 REV__ENSG00000154007|ENST00000284142|ASB17 REV__ENSG00000154007|ENST00000284142|ASB17 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.2356872558594 2 499.785099 997.555644 0.75262 0.00037615 0.18573 9.2823E-05 0.93835 0.00046897 499.78548935378615 48.181 0.3581 42.947 42.711 43.069 -5.2339 35 21 2 0 0 0 8.7369 1 29947 29947 30.637 0 1 10728000 + 23897 21203 16212 16522 28192 28192 0.05676858817525954 IPNKGHVL 8 Unmodified _IPNKGHVL_ 0 0 0 nc|ENSG00000153904|O94760-2|DDAH1;ENSG00000153904|ENST00000284031|DDAH1 nc|ENSG00000153904|O94760-2|DDAH1 nc|ENSG00000153904|O94760-2|DDAH1 MSMS AL20221201_MKP_PDAC_01 4 439.2676391601562 2 439.266345 876.518136 NaN NaN NaN NaN NaN NaN NaN 40.403 1 35.873 35.373 36.373 -4.5294 0 0 0 0.73801 1 24121 24121 26.341 1.6674 1 23898 6279 16213 16523 28193 28193 0.07493812342568162 IPNKNRAEQL 10 Unmodified _IPNKNRAEQL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8912658691406 3 394.891166 1181.65167 -0.56322 -0.00022241 0.052749 2.083E-05 -0.51047 -0.00020158 394.89115123689515 18.428 0.31871 18.428 18.315 18.634 0 93 41 3 0 0 0 0.38092 1 9144 9144 24.882 11.839 1 3923900 23899 2175 16214 16524 28194 28194 0.06811006657608232 IPNKNRAEQL 10 Unmodified _IPNKNRAEQL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3339233398438 2 591.833111 1181.65167 0.94592 0.00055983 1.2735 0.0007537 2.2194 0.0013135 591.8339738229054 19.883 0.31446 17.227 17.09 17.404 -2.6564 30 18 2 0 0 0 0.043225 1 10563 10563 61.602 30.965 1 2316400 23900 2175 16214 16524 28195 28195 0.06811006657608232 IPNKPPPEY 9 Unmodified _IPNKPPPEY_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7828369140625 2 527.782025 1053.5495 -0.41615 -0.00021964 0.62451 0.00032961 0.20836 0.00010997 527.7820589412822 28.339 0.54677 28.339 28.074 28.621 0 41 29 3 0 0 0 0.21643 1 14575 14575 21.537 6.6987 1 1502000 23901 6164 16215 16525 28196 28196 0.024863405860060084 IPNPPLWAGTG 11 Unmodified _IPNPPLWAGTG_ 0 0 0 REV__ENST00000506269.1_1_5:180220053-180230320:-|nuORF REV__ENST00000506269.1_1_5:180220053-180230320:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8003540039062 2 561.800749 1121.58694 1.3279 0.00074602 -0.2075 -0.00011657 1.1204 0.00062944 561.8004673629989 53.679 0.71905 47.874 47.481 48.2 -5.8042 102 45 3 0 0 0 0.51719 2 33867 33867;34004 19.362 19.362 1 130230000 + 23902 28085 16216 16526 28197;28198 28197 0.031014318516099593 IPNPPVCLAR 10 Unmodified _IPNPPVCLAR_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3033447265625 2 540.305144 1078.59573 0.31178 0.00016846 -1.8352 -0.00099157 -1.5234 -0.00082311 540.3031922553624 60.337 0.6302 60.294 59.846 60.476 -0.043507 74 32 3 0 0 0 0.38092 1 32881 32881 22.736 11.096 1 38079000 + 23903 29829 16217 16527 28199 28199 0.05958082216443472 IPNQKRKAW 9 Unmodified _IPNQKRKAW_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8942260742188 3 380.89273 1139.65636 0.86509 0.00032951 1.2614 0.00048046 2.1265 0.00080997 380.8935587972448 41.504 0.42207 36.896 36.655 37.077 -4.6079 38 27 2 0 0 0 0.32235 1 24963 24963 16.149 0.90062 1 23140000 + 23904 20707 16218 16528 28200 28200 0.09211935591042675 IPNQKRKAW 9 Unmodified _IPNQKRKAW_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MSMS AL20221201_MKP_PDAC_01 4 380.8932495117188 3 380.89273 1139.65636 NaN NaN NaN NaN NaN NaN NaN 41.362 1 36.754 36.254 37.254 -4.6079 0 0 0 0.61214 1 24828 24828 12.241 0 1 + 23905 20707 16218 16528 28201 28201 0.09211935591042675 IPNSIMTIL 9 Oxidation (M) _IPNSIM(Oxidation (M))TIL_ IPNSIM(1)TIL IPNSIM(50)TIL 0 0 1 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.286865234375 2 509.286085 1016.55762 0.42208 0.00021496 -0.39081 -0.00019904 0.031272 1.5927E-05 509.28620654195475 73.247 0.27995 73.289 73.146 73.426 0.041725 18 12 2 0 0 0 0.039985 1 40361 40361 49.933 19.708 1 2828000 23906 3879 16219 16529 28202 28202 691 0.050001515111489425 IPNSIMTIL 9 Unmodified _IPNSIMTIL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2901916503906 2 501.288628 1000.5627 0.3842 0.00019259 0.31494 0.00015788 0.69914 0.00035047 501.28874202080704 99.833 0.13885 93.658 93.588 93.727 -6.1757 17 10 2 0 0 0 0.024882 1 66604 66604 58.679 16.839 1 72095000 23907 3879 16219 16530 28203 28203 0.062444553737577735 IPNSLAEIV 9 Unmodified _IPNSLAEIV_ 0 0 0 REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1 REV__nc|ENSG00000182621|Q9NQ66-2|PLCB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2586059570312 2 478.276575 954.538597 0.26925 0.00012877 1.4995 0.00071717 1.7687 0.00084595 478.2775976358603 58.865 0.11319 58.865 58.788 58.902 0 6 4 2 0 0 0 0.18521 1 32745 32745 16.942 0 1 661600 + 23908 23285 16220 16531 28204 28204 0.059509382117198584 IPNTLNPVF 9 Unmodified _IPNTLNPVF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7850952148438 2 507.784567 1013.55458 0.26558 0.00013486 0.12215 6.2027E-05 0.38773 0.00019688 507.7846215049801 72.243 0.50114 71.767 71.499 72 -0.4761 38 22 2 0 0 0 0.25681 1 39450 39450 19.257 2.1441 1 6103000 23909 5021 16221 16532 28205 28205 0.04834644448612835 IPNTLNPVF 9 Unmodified _IPNTLNPVF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.786376953125 2 507.784567 1013.55458 0.84018 0.00042663 -0.073598 -3.7372E-05 0.76659 0.00038926 507.7844953768358 71.726 0.38189 71.765 71.511 71.893 0.039024 32 17 2 0 0 0 0.018301 1 39434 39434 65.235 19.214 1 7477200 23910 5021 16221 16532 28206 28206 0.04834644448612835 IPNTLNPVF 9 Unmodified _IPNTLNPVF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7845458984375 2 507.784567 1013.55458 1.1972 0.00060793 -0.079548 -4.0393E-05 1.1177 0.00056754 507.78435508286026 79.639 0.55994 73.464 73.186 73.746 -6.1757 81 33 3 0 0 0 0.024882 3 52214 52075;52214;52345 58.679 18.721 1 43226000 23911 5021 16221 16532 28207;28208;28209 28208 0.04834644448612835 IPNVIKGL 8 Unmodified _IPNVIKGL_ 0 0 0 REV__ENSG00000165953|ENST00000677451|SERPINA12 REV__ENSG00000165953|ENST00000677451|SERPINA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2788696289062 2 427.278921 852.543289 0.37946 0.00016214 -0.98432 -0.00042058 -0.60486 -0.00025844 427.27845991219186 59.342 0.30659 59.289 59.113 59.42 -0.053062 24 15 2 0 0 0 0.5284 1 32394 32394 32.117 6.7177 1 6739500 + 23912 22067 16222 16533 28210 28210 0.11111867145143606 IPNVQQLEM 9 Oxidation (M) _IPNVQQLEM(Oxidation (M))_ IPNVQQLEM(1) IPNVQQLEM(52) 0 0 1 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2761840820312 2 544.276249 1086.53795 -0.25982 -0.00014141 -0.39702 -0.00021609 -0.65684 -0.0003575 544.276298008921 48.427 0.36686 48.427 48.251 48.618 0 51 17 4 0 0 0 0.03568 2 26616 26512;26616 52.268 17.867 1 17557000 23913 1371 16223 16534 28211;28212 28212 231 -0.0018622449965732812 IPNVQQLEM 9 Oxidation (M) _IPNVQQLEM(Oxidation (M))_ IPNVQQLEM(1) IPNVQQLEM(71) 0 0 1 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2765502929688 2 544.276249 1086.53795 0.039259 2.1368E-05 0.49 0.00026669 0.52926 0.00028806 544.2764000312542 48.827 0.20901 48.455 48.369 48.578 -0.37172 16 10 2 0 0 0 0.013323 1 26205 26205 71.134 29.294 1 4200900 23914 1371 16223 16534 28213 28213 231 -0.0018622449965732812 IPNVQQLEM 9 Unmodified _IPNVQQLEM_ 0 0 0 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2792358398438 2 536.278792 1070.54303 0.59976 0.00032164 0.73502 0.00039418 1.3348 0.00071581 536.2789741277378 69.776 0.32478 63.6 63.36 63.685 -6.1757 29 17 2 0 0 0 0.047196 1 45499 45499 46.021 9.5148 1 26444000 23915 1371 16223 16535 28214 28214 0.010580793629742402 IPPFNKQYT 9 Unmodified _IPPFNKQYT_ 0 0 0 ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1 ENST00000411772.5_2_15:43699583-43738985:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2950439453125 2 554.295299 1106.57605 1.2767 0.00070768 -0.68687 -0.00038073 0.58984 0.00032695 554.2949745397708 53.836 0.56611 48.032 47.849 48.415 -5.8042 55 33 3 0 0 0 0.095405 1 34088 34088 34.102 0 1 31059000 23916 958 16224 16536 28215 28215 0.027020294773365094 IPPGAGRLLCP 11 Unmodified _IPPGAGRLLCP_ 0 0 0 REV__ENST00000500118.2_1_8:6263499-6263865:-|nuORF REV__ENST00000500118.2_1_8:6263499-6263865:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2120971679688 3 365.211071 1092.61138 NaN NaN NaN NaN NaN NaN NaN 43.535 1 43.535 43.035 44.035 0 0 0 0 0.94165 1 23650 23650 0.45452 0 1 + 23917 28005 16225 16537 28216 28216 0.06878368733509888 IPPLPLPTF 9 Unmodified _IPPLPLPTF_ 0 0 0 ENST00000254043.7_1_17:39670059-39670221:-|nuORF ENST00000254043.7_1_17:39670059-39670221:-|nuORF ENST00000254043.7_1_17:39670059-39670221:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.80029296875 2 497.802229 993.589904 NaN NaN NaN NaN NaN NaN NaN 55.527 1 55.458 54.958 55.958 -0.068737 0 0 0 0.6032 1 30180 30180 12.532 1.732 1 23918 11160 16226 16538 28217 28217 0.09285306976414631 IPPMLIIF 8 Unmodified _IPPMLIIF_ 0 0 0 ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2887573242188 2 472.2879 942.561247 0.30567 0.00014437 1.0221 0.0004827 1.3277 0.00062707 472.28825573870233 84.729 0.46165 84.729 84.488 84.95 0 45 21 3 0 0 0 0.81107 2 46899 46899;46994 0 0 1 2199000 23919 8804 16227 16539 28218;28219 28218 0.08766866075654889 IPPMLIIF 8 Unmodified _IPPMLIIF_ 0 0 0 ENSG00000179055|ENST00000641530|OR13D1;nc|ENSG00000179055|Q8NGV5|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 ENSG00000179055|ENST00000641530|OR13D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2877197265625 2 472.2879 942.561247 -0.28269 -0.00013351 0.10307 4.868E-05 -0.17961 -8.4829E-05 472.28785651177145 84.904 0.51813 84.967 84.721 85.239 0.063179 73 21 4 0 0 0 0.81107 1 47009 47009 0 0 1 472240000 23920 8804 16227 16539 28220 28220 0.08766866075654889 IPPMPPGIL 9 Unmodified _IPPMPPGIL_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B;ENST00000551111.1_1_12:50024390-50026982:+|nuORF;nc|ENSG00000110844|Q6NWY9-4|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7767944335938 2 467.775157 933.53576 NaN NaN NaN NaN NaN NaN NaN 40.4 1 40.405 39.905 40.905 0.0050545 0 0 0 0.38239 1 21542 21542 20.871 0.41758 1 23921 2746 16228 16540 28221 28221 0.06633391553214096 IPPNTLNLRSF 11 Unmodified _IPPNTLNLRSF_ 0 0 0 ENSG00000177483|ENST00000316997|RBM44 ENSG00000177483|ENST00000316997|RBM44 ENSG00000177483|ENST00000316997|RBM44 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3074951171875 2 636.358962 1270.70337 -0.24509 -0.00015597 -0.54981 -0.00034987 -0.7949 -0.00050584 636.358281351378 53.854 0.17745 53.787 53.704 53.882 -0.066936 12 8 2 0 0 0 0.28752 1 29253 29253 9.3831 0 1 1156400 23922 8689 16229 16541 28222 28222 0.07884750351490766 IPPQETFDYSR 11 Unmodified _IPPQETFDYSR_ 0 0 0 REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5 REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 676.8295288085938 2 676.827692 1351.64083 0.70476 0.000477 1.5978 0.0010815 2.3026 0.0015585 676.8297003587732 100.57 0.25872 94.393 94.312 94.57 -6.1757 29 17 3 0 0 0 0.27675 1 67316 67316 20.415 8.1739 1 71213000 + 23923 17269 16230 16542 28223 28223 -0.02092440507340143 IPPRKRLRKRD 11 Unmodified _IPPRKRLRKRD_ 0 0 0 nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF nc|ENSG00000171606|Q96GC6-3|ZNF274 nc|ENSG00000171606|Q96GC6-3|ZNF274 MSMS AL20221201_MKP_PDAC_01 4 478.9739685058594 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 16.926 1 14.355 13.855 14.855 -2.5712 0 0 0 0.94337 1 8807 8807 0.094841 0.011491 1 23924 8122 16231 16543 28224 28224 0.20593698547577333 IPPYHFYF 8 Unmodified _IPPYHFYF_ 0 0 0 REV__MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|7|2|sense REV__MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|7|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.271484375 2 542.268553 1082.52255 0.34466 0.0001869 2.684 0.0014554 3.0286 0.0016423 542.2701710863879 68.737 0.32865 68.737 68.509 68.838 0 19 14 2 0 0 0 0.80044 1 38271 38271 6.3541 0.59368 1 463230 + 23925 29465 16232 16544 28225 28225 -0.01540723234552388 IPPYHFYF 8 Unmodified _IPPYHFYF_ 0 0 0 REV__MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|7|2|sense REV__MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|7|2|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.268553 1082.52255 0.34466 0.0001869 2.684 0.0014554 3.0286 0.0016423 542.2701710863879 68.737 0.32865 68.737 68.509 68.838 0 0 0 NaN 6.3541 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 463230 + 23926 29465 16232 16544 -0.01540723234552388 IPQANHFW 8 Unmodified _IPQANHFW_ 0 0 0 REV__ENSG00000064309|ENST00000531738|CDON REV__ENSG00000064309|ENST00000531738|CDON MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.3162841796875 2 506.753601 1011.49265 1.3539 0.0006861 -0.077735 -3.9393E-05 1.2762 0.0006467 506.75315783166786 101 0.20795 94.823 94.748 94.956 -6.1757 25 11 4 0 0 0 8.7369 1 67697 67697 9.3474 4.1168 1 46039000 + 23927 17353 16233 16545 28226 28226 -0.01263662179860603 IPQATDPDKTY 11 Unmodified _IPQATDPDKTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.8082885742188 2 624.808968 1247.60338 -0.53871 -0.00033659 0.54861 0.00034278 0.0099017 6.1867E-06 624.8091137497584 27.861 0.20399 27.861 27.761 27.965 0 21 9 3 0 0 0 0.15772 1 14349 14349 42.835 22.382 1 1945900 23928 8367 16234 16546 28227 28227 -0.010515317729414164 IPQDIMHGQY 10 Oxidation (M) _IPQDIM(Oxidation (M))HGQY_ IPQDIM(1)HGQY IPQDIM(46)HGQY 0 0 1 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2858276367188 2 609.284605 1216.55466 0.84059 0.00051216 2.1119 0.0012867 2.9525 0.0017989 609.286689172884 34.996 0.29031 30.9 30.683 30.973 -4.0951 34 16 3 0 0 0 0.10424 1 20260 20260 45.7 20.709 1 5702800 23929 2180 16235 16547 28228 28228 376 -0.044957236136951906 IPQDQLVVM 9 Unmodified _IPQDQLVVM_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.8011474609375 2 521.78371 1041.55287 0.9871 0.00051505 -3.2374 -0.0016892 -2.2503 -0.0011741 521.7818032480498 70.3 0.36531 64.124 63.879 64.244 -6.1757 40 20 3 0 0 0 0.16418 1 45815 45815 25.399 7.2643 1 41361000 23930 5973 16236 16548 28229 28229 0.03375267368346613 IPQESTAIL 9 Unmodified _IPQESTAIL_ 0 0 0 REV__ENSG00000031698|ENST00000234677|SARS1 REV__ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2745361328125 2 486.274032 970.533512 1.5299 0.00074395 -0.33753 -0.00016413 1.1924 0.00057982 486.27379808017673 47.735 0.66582 42.501 42.142 42.808 -5.2339 97 39 3 0 0 0 0.023481 3 29705 29570;29705;29840 60.074 8.4441 1 83397000 + 23931 17148 16237 16549 28230;28231;28232 28231 0.0470663434908829 IPQGGRGAIQF 11 Unmodified _IPQGGRGAIQF_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3179931640625 2 572.317097 1142.61964 NaN NaN NaN NaN NaN NaN NaN 44.352 1 44.329 43.829 44.829 -0.022064 0 0 0 0.13892 1 23795 23795 56.177 23.872 1 23932 1943;1893 16238 16550 28233 28233 0.0540363897446241 IPQGQQQSY 9 Unmodified _IPQGQQQSY_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.757568359375 2 524.756538 1047.49852 0.056989 2.9905E-05 1.0481 0.00055002 1.1051 0.00057993 524.7570625005526 22.428 0.42895 22.428 22.224 22.653 0 30 20 2 0 0 0 0.2143 1 11391 11391 21.747 8.7042 1 595330 23933 10065 16239 16551 28234 28234 -0.023326084588461526 IPQGTFFFFFF 11 Unmodified _IPQGTFFFFFF_ 0 0 0 ENST00000487527.5_1_17:27941043-27941295:+|nuORF ENST00000487527.5_1_17:27941043-27941295:+|nuORF ENST00000487527.5_1_17:27941043-27941295:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2345581054688 3 466.569142 1396.6856 0.20508 9.5683E-05 -0.23024 -0.00010742 -0.025165 -1.1741E-05 466.5690502627983 57.116 0.40756 56.631 56.369 56.777 -0.48554 24 18 2 0 0 0 0.3058 1 31027 31027 1.4551 0 1 2186500 23934 14205 16240 16552 28235 28235 0.0031203509665829188 IPQGTFICEY 10 Carbamidomethyl (C) _IPQGTFIC(Carbamidomethyl (C))EY_ IPQGTFIC(1)EY IPQGTFIC(53)EY 0 1 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 614.2880859375 2 614.289356 1226.56416 NaN NaN NaN NaN NaN NaN NaN 68.766 1 62.59 62.09 63.09 -6.1757 0 0 0 0.073691 1 44897 44897 53.404 31.867 1 23935 10274 16241 16553 28236 28236 927 -0.04005955328170785 IPQHWYCDQ 9 Unmodified _IPQHWYCDQ_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1743774414062 3 397.174686 1188.50223 0.29889 0.00011871 -1.3784 -0.00054746 -1.0795 -0.00042875 397.17397233192617 53.42 0.44339 53.42 53.221 53.665 0 49 20 3 0 0 0 0.43463 1 29566 29566 10.8 3.6978 1 7599100 23936 1325 16242 16554 28237 28237 -0.08448261956664282 IPQHWYCDQ 9 Unmodified _IPQHWYCDQ_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS AL20221201_MKP_PDAC_01 4 397.1746826171875 3 397.174686 1188.50223 NaN NaN NaN NaN NaN NaN NaN 61.602 1 55.427 54.927 55.927 -6.1757 0 0 0 0.56093 1 39689 39689 9.544 3.7605 1 23937 1325 16242 16554 28238 28238 -0.08448261956664282 IPQIVWMS 8 Unmodified _IPQIVWMS_ 0 0 0 ENST00000609887.1_1_X:46404949-46406924:+|nuORF ENST00000609887.1_1_X:46404949-46406924:+|nuORF ENST00000609887.1_1_X:46404949-46406924:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.263427734375 2 487.262413 972.510274 NaN NaN NaN NaN NaN NaN NaN 44.666 1 44.666 44.166 45.166 0 0 0 0 0.88073 1 24314 24314 19.439 3.6708 1 23938 15887 16243 16555 28239 28239 0.02291917030777313 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2468566894531 3 409.24695 1224.71902 -0.82359 -0.00033705 0.55571 0.00022742 -0.26788 -0.00010963 409.2471885225321 30.223 0.52919 30.223 29.974 30.503 0 85 25 5 0 0 0 0.052718 3 15609 15609;15712;15819 64.692 46.828 1 35428000 23939 7383 16244 16556 28240;28241;28242 28240 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.3672485351562 2 613.366787 1224.71902 -0.55238 -0.00033881 0.60857 0.00037327 0.056181 3.446E-05 613.3671617472729 30.21 0.28621 30.21 30.057 30.343 0 22 13 2 0 0 0 0.32493 1 15705 15705 26.021 15.221 1 2039200 23940 7383 16244 16556 28243 28243 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2471008300781 3 409.24695 1224.71902 0.66755 0.00027319 0.34804 0.00014244 1.0156 0.00041563 409.24709578161344 30.17 0.62177 30.089 29.792 30.414 -0.080431 78 23 5 0 0 0 0.087164 3 15656 15558;15656;15764 43.477 21.368 1 50636000 23941 7383 16244 16556 28244;28245;28246 28245 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.3675537109375 2 613.366787 1224.71902 0.75447 0.00046276 0.87772 0.00053837 1.6322 0.0010011 613.3673685793302 30.157 0.43942 30.076 29.868 30.308 -0.080429 31 16 3 0 0 0 0.052718 1 15674 15674 57.249 30.981 1 2392200 23942 7383 16244 16556 28247 28247 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2477416992188 3 409.24695 1224.71902 -0.26432 -0.00010817 0.70476 0.00028842 0.44043 0.00018025 409.24741156259694 29.988 0.49323 30.018 29.784 30.277 0.030106 73 19 5 0 0 0 0.052718 2 15609 15609;15707 50.13 29.259 1 11175000 23943 7383 16244 16556 28248;28249 28248 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2472839355469 3 409.24695 1224.71902 0.8436 0.00034524 -0.18744 -7.6708E-05 0.65616 0.00026853 409.2468378784235 33.186 0.64417 29.33 29.01 29.654 -3.8562 129 39 4 0 0 0 0.017375 4 18858 18858;18985;19108;19220 68.484 53.47 1 451370000 23944 7383 16244 16556 28250;28251;28252;28253 28250 0.11565036868546485 IPQKQREITL 10 Unmodified _IPQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3657836914062 2 613.366787 1224.71902 0.61815 0.00037915 -0.42558 -0.00026104 0.19256 0.00011811 613.3664975452001 33.159 0.49801 29.302 29.1 29.598 -3.8562 79 31 3 0 0 0 0.00019901 3 19142 18896;19024;19142 117.76 73.988 1 65187000 23945 7383 16244 16556 28254;28255;28256 28256 0.11565036868546485 IPQLDPFTTF 10 Unmodified _IPQLDPFTTF_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.80859375 2 589.808239 1177.60193 0.35445 0.00020906 -0.96313 -0.00056806 -0.60868 -0.00035901 589.8073643172039 96.581 0.1925 96.277 96.173 96.366 -0.30472 15 10 2 0 0 0 0.67459 1 52740 52740 5.7319 3.6721 1 350400 23946 8162 16245 16557 28257 28257 0.020228789289376436 IPQNQRFI 8 Unmodified _IPQNQRFI_ 0 0 0 nc|ENSG00000185483|Q01973-2|ROR1;ENSG00000185483|ENST00000371079|ROR1 nc|ENSG00000185483|Q01973-2|ROR1 nc|ENSG00000185483|Q01973-2|ROR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2881164550781 2 508.287808 1014.56106 0.75195 0.00038221 -0.23152 -0.00011768 0.52043 0.00026453 508.28774324680984 69.197 1.5869 63.021 62.275 63.862 -6.1757 166 88 2 0 0 0 0.57408 1 45571 45571 28.173 1.2896 1 57409000 23947 9376 16246 16558 28258 28258 0.054365823999773966 IPQQHTQVL 9 Unmodified _IPQQHTQVL_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2981567382812 2 532.298373 1062.58219 -0.43362 -0.00023081 0.09381 4.9935E-05 -0.33981 -0.00018088 532.2983836869967 30.065 0.53573 30.065 29.847 30.383 0 75 25 4 0 0 0 0.011671 3 15524 15524;15632;15738 75.761 31.903 1 57923000 23948 2314 16247 16559 28259;28260;28261 28259 0.053405477088290354 IPQQHTQVL 9 Unmodified _IPQQHTQVL_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.299072265625 2 532.298373 1062.58219 0.60655 0.00032287 0.79513 0.00042325 1.4017 0.00074612 532.2987649594029 30.072 0.51019 29.991 29.77 30.28 -0.080429 55 19 4 0 0 0 0.011671 2 15525 15525;15624 75.761 25.828 1 18450000 23949 2314 16247 16559 28262;28263 28262 0.053405477088290354 IPQQHTQVL 9 Unmodified _IPQQHTQVL_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.299072265625 2 532.298373 1062.58219 1.3544 0.00072092 0.84052 0.00044741 2.1949 0.0011683 532.2982729468246 33.912 0.81554 29.927 29.525 30.34 -3.9853 134 45 5 0 0 0 0.0086209 3 19608 19362;19484;19608 89.401 33.224 1 325620000 23950 2314 16247 16559 28264;28265;28266 28266 0.053405477088290354 IPQQHTQVL 9 Unmodified _IPQQHTQVL_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.298373 1062.58219 -0.0016501 -8.7837E-07 0.6542 0.00034823 0.65255 0.00034735 532.2987017488572 29.804 0.35487 29.834 29.693 30.047 0.030106 -0.12015 0.00015281 NaN 89.401 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1848000 23951 2314 16247 16559 0.053405477088290354 IPQQLLTTL 9 Unmodified _IPQQLLTTL_ 0 0 0 nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-3|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25 nc|ENSG00000104960|Q86YD1-2|PTOV1;nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8132934570312 2 513.813325 1025.6121 0.24229 0.00012449 0.28053 0.00014414 0.52282 0.00026863 513.8138763135524 76.129 0.38004 75.649 75.455 75.835 -0.47945 48 15 5 0 0 0 0.087258 2 41626 41626;41740 36.044 5.8194 1 1943800 23952 2266;2264 16248 16560 28267;28268 28267 0.10031486654179389 IPQQLLTTL 9 Unmodified _IPQQLLTTL_ 0 0 0 nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;nc|ENSG00000104960|Q86YD1-3|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25 nc|ENSG00000104960|Q86YD1-2|PTOV1;nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8138427734375 2 513.813325 1025.6121 0.42679 0.00021929 1.5308 0.00078653 1.9576 0.0010058 513.8141117730721 75.584 0.30283 75.632 75.494 75.797 0.047943 24 13 2 0 0 0 0.047196 1 41693 41693 46.021 6.0636 1 1923900 23953 2266;2264 16248 16560 28269 28269 0.10031486654179389 IPQRLVLRVLR 11 Unmodified _IPQRLVLRVLR_ 0 0 0 ENST00000548924.5_1_12:70901743-70904223:+|nuORF;ENST00000549616.5_1_12:70901743-70914019:+|nuORF ENST00000548924.5_1_12:70901743-70904223:+|nuORF ENST00000548924.5_1_12:70901743-70904223:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.5830078125 2 681.956438 1361.89832 NaN NaN NaN NaN NaN NaN NaN 76.332 1 76.38 75.88 76.88 0.047943 0 0 0 0.94144 1 42117 42117 1.4819 0 1 23954 15142 16249 16561 28270 28270 0.2318496594714361 IPQRQIEEM 9 Oxidation (M) _IPQRQIEEM(Oxidation (M))_ IPQRQIEEM(1) IPQRQIEEM(130) 0 0 1 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7943725585938 2 580.29243 1158.57031 0.14014 8.1321E-05 -2.0799 -0.0012069 -1.9397 -0.0011256 580.2908340156592 23.238 0.53973 20.459 20.25 20.79 -2.7784 70 42 2 0 0 0 0.0024112 1 12555 12555 129.77 81.426 1 10924000 23955 6106 16250 16562 28271 28271 1087 -0.002634370966688948 IPQRQIEEM 9 Unmodified _IPQRQIEEM_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2951049804688 2 572.294973 1142.57539 1.2355 0.00070709 -1.1153 -0.00063826 0.12027 6.8831E-05 572.2943340492789 35.734 0.46651 31.541 31.336 31.802 -4.1928 63 29 3 0 0 0 0.0087873 2 20853 20718;20853 103.35 65.178 1 13526000 23956 6106 16250 16563 28272;28273 28273 0.009808667659399362 IPQSWRLYL 9 Unmodified _IPQSWRLYL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3340454101562 2 588.332216 1174.64988 0.30692 0.00018057 0.80154 0.00047157 1.1085 0.00065215 588.3329246442481 75.815 0.22004 75.863 75.707 75.927 0.047943 22 9 3 0 0 0 0.037253 1 41805 41805 56.177 5.322 1 2405100 23957 8367 16251 16564 28274 28274 0.06953997639652698 IPQSWRLYL 9 Unmodified _IPQSWRLYL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 588.263427734375 2 588.332216 1174.64988 0.87464 0.00051458 2.0268 0.0011924 2.9014 0.001707 588.3328771742589 93.855 0.41118 87.679 87.412 87.823 -6.1757 36 23 2 0 0 0 0.065878 1 62136 62136 32.786 4.2988 1 7456400 23958 8367 16251 16564 28275 28275 0.06953997639652698 IPQTALLKY 9 Unmodified _IPQTALLKY_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000495755.1_1_6:33235423-33235928:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.816162109375 2 523.815867 1045.61718 0.28078 0.00014708 2.1174 0.0011091 2.3982 0.0012562 523.8166353594166 52.841 0.21494 52.389 52.261 52.476 -0.45173 21 10 3 0 0 0 0.0085366 1 28558 28558 90.135 38.505 1 3909900 23959 10571 16252 16565 28276 28276 0.0961979051680828 IPQTALLKY 9 Unmodified _IPQTALLKY_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000495755.1_1_6:33235423-33235928:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.8168334960938 2 523.815867 1045.61718 0.74617 0.00039085 1.1119 0.00058242 1.858 0.00097328 523.8161553654472 52.535 0.34042 52.476 52.289 52.629 -0.058918 40 16 3 0 0 0 0.0082475 2 28410 28410;28512 92.653 36.476 1 11735000 23960 10571 16252 16565 28277;28278 28277 0.0961979051680828 IPQTALLKY 9 Unmodified _IPQTALLKY_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000495755.1_1_6:33235423-33235928:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8170166015625 2 523.815867 1045.61718 1.2297 0.00064415 0.338 0.00017705 1.5677 0.0008212 523.8159311759863 58.374 0.42416 52.299 52.05 52.475 -6.0745 53 22 3 0 0 0 0.0047067 2 37335 37335;37459 118.07 59.647 1 46831000 23961 10571 16252 16565 28279;28280 28279 0.0961979051680828 IPQWCAEF 8 Unmodified _IPQWCAEF_ 0 0 0 ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF ENSG00000144045|ENST00000404568|DQX1 ENSG00000144045|ENST00000404568|DQX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2264099121094 2 497.228571 992.442588 0.39582 0.00019681 -1.8548 -0.00092228 -1.459 -0.00072547 497.2276654085482 68.287 0.3794 68.287 68.06 68.439 0 30 17 2 0 0 0 0.80044 1 38019 38019 6.3541 0 1 499820 23962 5581 16253 16566 28281 28281 -0.05393532900041009 IPQWRRGCV 9 Unmodified _IPQWRRGCV_ 0 0 0 REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF REV__ENST00000534242.5_1_8:145158958-145159147:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8009643554688 2 557.80056 1113.58657 0.49922 0.00027847 -0.3584 -0.00019991 0.14082 7.8552E-05 557.8002249007786 75.607 0.40765 75.655 75.389 75.797 0.047943 45 18 3 0 0 0 0.48152 1 41736 41736 8.5933 0 1 6287000 + 23963 28495 16254 16567 28282 28282 0.034317336507456275 IPRAALLPLL 10 Unmodified _IPRAALLPLL_ 0 0 0 ENSG00000166033|ENST00000368984|HTRA1 ENSG00000166033|ENST00000368984|HTRA1 ENSG00000166033|ENST00000368984|HTRA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.3215942382812 2 538.863152 1075.71175 0.56351 0.00030366 -0.44107 -0.00023767 0.12245 6.5982E-05 538.8626872394924 99.584 0.1066 93.409 93.341 93.448 -6.1757 12 6 2 0 0 0 0.22149 1 66313 66313 20.454 10.38 1 33151000 23964 7425 16255 16568 28283 28283 0.17692349058802392 IPRAHAWPSPY 11 Unmodified _IPRAHAWPSPY_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2241821289062 3 432.22789 1293.66184 0.66987 0.00028954 -2.4885 -0.0010756 -1.8186 -0.00078607 432.22565827615824 44.799 0.17807 39.947 39.905 40.083 -4.852 15 11 2 0 0 0 0.50268 1 27384 27384 16.275 9.6511 1 5705600 23965 481 16256 16569 28284 28284 0.02675614382837921 IPRDPSQQEL 10 Unmodified _IPRDPSQQEL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.8079833984375 2 591.809302 1181.60405 NaN NaN NaN NaN NaN NaN NaN 29.825 1 29.825 29.325 30.325 0 0 0 0 0.074759 1 15471 15471 53.317 19.872 1 23966 7904 16257 16570 28285 28285 0.02051307666761204 IPRDPSQQEL 10 Unmodified _IPRDPSQQEL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8096923828125 2 591.809302 1181.60405 0.85197 0.0005042 -1.7458 -0.0010332 -0.89386 -0.000529 591.8089080648706 34.246 0.2972 30.261 30.082 30.379 -3.9853 28 16 2 0 0 0 0.025206 1 19699 19699 70.929 28.973 1 7365300 23967 7904 16257 16570 28286 28286 0.02051307666761204 IPRDRKTFL 9 Unmodified _IPRDRKTFL_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5647583007812 3 382.564502 1144.67168 1.1904 0.0004554 -0.59722 -0.00022847 0.59317 0.00022693 382.56446593178794 28.622 0.32852 25.474 25.282 25.61 -3.1482 28 16 2 0 0 0 0.19361 1 15976 15976 23.79 8.5413 1 6474500 23968 10459 16258 16571 28287 28287 0.1051280238821164 IPREEKPIE 9 Unmodified _IPREEKPIE_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8117065429688 2 555.811313 1109.60807 -0.050892 -2.8286E-05 0.68688 0.00038178 0.63599 0.00035349 555.8115672291862 34.341 0.15426 34.15 34.046 34.2 -0.19131 10 5 2 0 0 0 0.46501 1 17952 17952 9.3831 1.473 1 1808600 23969 756 16259 16572 28288 28288 0.057653971604850085 IPREEKPIE 9 Unmodified _IPREEKPIE_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000054267|Q4LE39-4|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.811313 1109.60807 0.36604 0.00020345 1.0206 0.00056725 1.3866 0.0007707 556.3131602328065 34.086 0.18892 34.115 34.036 34.225 0.028934 -0.017634 0.00029887 NaN 9.3831 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1021100 23970 756 16259 16572 0.057653971604850085 IPRENAQISL 10 Unmodified _IPRENAQISL_ 0 0 0 ENSG00000102524|ENST00000375887|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8203125 2 570.822212 1139.62987 0.47762 0.00027263 -0.73587 -0.00042005 -0.25825 -0.00014742 570.8217553681203 43.202 0.33358 43.202 43.046 43.379 0 37 16 3 0 0 0 0.069578 2 23409 23409;23522 61.602 16.965 1 11734000 23971 2048 16260 16573 28289;28290 28289 0.06564201909031908 IPRENAQISL 10 Unmodified _IPRENAQISL_ 0 0 0 ENSG00000102524|ENST00000375887|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8231201171875 2 570.822212 1139.62987 0.9595 0.0005477 -0.46193 -0.00026368 0.49757 0.00028402 570.8220886647717 48.681 0.37415 43.285 43.101 43.475 -5.3961 48 21 3 0 0 0 0.029139 1 30289 30289 77.049 16.975 1 53248000 23972 2048 16260 16573 28291 28291 0.06564201909031908 IPREPYKF 8 Unmodified _IPREPYKF_ 0 0 0 REV__ENSG00000177283|ENST00000374694|FZD8 REV__ENSG00000177283|ENST00000374694|FZD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2920532226562 2 525.292559 1048.57057 NaN NaN NaN NaN NaN NaN NaN 60.245 1 59.754 59.254 60.254 -0.49079 0 0 0 0.95973 1 32802 32802 8.5933 1.304 1 + 23973 22975 16261 16574 28292 28292 0.04822350685503807 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2206420898438 3 361.220735 1080.64038 -0.16894 -6.1026E-05 0.21767 7.8627E-05 0.048727 1.7601E-05 361.22079163376736 35.578 0.25288 35.578 35.46 35.713 0 27 12 3 0 0 0 0.20428 1 18802 18802 27.223 9.3601 1 8639600 23974 16412 16262 16575 28293 28293 0.10328229354126961 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2211303710938 3 361.220735 1080.64038 -0.44611 -0.00016114 0.0030764 1.1113E-06 -0.44303 -0.00016003 361.2207196355382 35.693 0.37683 35.471 35.288 35.665 -0.2224 51 16 4 0 0 0 0.014417 2 18637 18637;18738 71.708 20.22 1 55039000 23975 16412 16262 16575 28294;28295 28294 0.10328229354126961 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.3268432617188 2 541.327465 1080.64038 -0.60122 -0.00032546 -0.018895 -1.0228E-05 -0.62012 -0.00033569 541.3274909467343 35.689 0.21969 35.467 35.353 35.573 -0.2224 18 9 3 0 0 0 0.2546 1 18689 18689 19.362 6.3195 1 2905100 23976 16412 16262 16575 28296 28296 0.10328229354126961 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2213439941406 3 361.220735 1080.64038 1.5518 0.00056053 0.14129 5.1036E-05 1.6931 0.00061157 361.2207971185837 39.336 0.52413 34.885 34.632 35.156 -4.4509 99 32 4 0 0 0 0.10247 2 23350 23224;23350 30.703 12.84 1 213910000 23977 16412 16262 16575 28297;28298 28298 0.10328229354126961 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.32763671875 2 541.327465 1080.64038 0.7462 0.00040394 0.017574 9.5133E-06 0.76377 0.00041345 541.3274567497415 39.334 0.38364 34.884 34.675 35.058 -4.4509 53 23 3 0 0 0 0.069655 2 23283 23283;23416 40.239 8.9709 1 29535000 23978 16412 16262 16575 28299;28300 28299 0.10328229354126961 IPREQGLRL 9 Unmodified _IPREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 361.220735 1080.64038 -0.13062 -4.7183E-05 0.04475 1.6165E-05 -0.08587 -3.1018E-05 361.2208425565739 35.422 0.25155 35.446 35.306 35.558 0.024967 -0.052027 -3.365E-05 NaN 71.708 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 7805400 23979 16412 16262 16575 0.10328229354126961 IPRFIKESL 9 Unmodified _IPRFIKESL_ 0 0 0 nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5 nc|ENSG00000145740|Q8TAD4-2|SLC30A5 nc|ENSG00000145740|Q8TAD4-2|SLC30A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2261657714844 3 368.225486 1101.65463 0.55908 0.00020587 0.16068 5.9168E-05 0.71977 0.00026504 368.22555104416944 47.542 0.32057 47.503 47.28 47.6 -0.038643 35 14 4 0 0 0 0.31356 1 25583 25583 16.566 5.6669 1 13853000 23980 5721 16263 16576 28301 28301 0.10786881782428281 IPRGPASQF 9 Unmodified _IPRGPASQF_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20221201_MKP_PDAC_01 4 486.7671813964844 2 486.766709 971.518865 NaN NaN NaN NaN NaN NaN NaN 39.088 1 34.637 34.137 35.137 -4.4509 0 0 0 0.16996 1 23148 23148 34.402 1.616 1 23981 16152 16264 16577 28302 28302 0.03196606991616591 IPRGSLSL 8 Unmodified _IPRGSLSL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.7589721679688 2 421.758352 841.502152 1.7922 0.00075589 -0.42884 -0.00018087 1.3634 0.00057502 421.7581551562956 47.478 0.33981 42.244 42.142 42.482 -5.2339 32 19 2 0 0 0 0.44637 1 29462 29462 39.95 1.9757 1 7843300 23982 9805 16265 16578 28303 28303 0.0750610610567719 IPRGTDPSY 9 Unmodified _IPRGTDPSY_ 0 0 0 ENSG00000135870|ENST00000367696|RC3H1;nc|ENSG00000135870|Q5TC82-2|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 ENSG00000135870|ENST00000367696|RC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2543029785156 2 503.253631 1004.49271 0.076519 3.8509E-05 1.468 0.00073876 1.5445 0.00077727 503.2541185493098 23.535 0.26217 23.535 23.326 23.588 0 28 12 3 0 0 0 0.18144 1 11951 11951 24.991 6.8446 1 1331100 23983 4750 16266 16579 28304 28304 -0.009357069705401955 IPRGVNVSAL 10 Unmodified _IPRGVNVSAL_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3092651367188 2 513.308741 1024.60293 1.4612 0.00075004 -0.68385 -0.00035103 0.77733 0.00039901 513.3085519266084 46.901 0.36002 46.868 46.656 47.016 -0.033417 38 17 3 0 0 0 0.17714 1 25208 25208 36.506 8.8774 1 7349900 23984 3048 16267 16580 28305 28305 0.09161138088529697 IPRGVNVSAL 10 Unmodified _IPRGVNVSAL_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3096923828125 2 513.308741 1024.60293 0.85126 0.00043696 -0.28966 -0.00014869 0.5616 0.00028827 513.3084637581682 52.662 0.44751 46.927 46.707 47.155 -5.7345 45 24 2 0 0 0 0.25982 1 33198 33198 29.841 2.2118 1 42858000 23985 3048 16267 16580 28306 28306 0.09161138088529697 IPRGVNVSAL 10 Unmodified _IPRGVNVSAL_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.308741 1024.60293 0.5821 0.0002988 -0.29857 -0.00015326 0.28353 0.00014554 513.3086121310697 47.176 0.2534 46.824 46.685 46.938 -0.3526 -0.04929 0.0001189 NaN 36.506 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2445600 23986 3048 16267 16580 0.09161138088529697 IPRHARQINTL 11 Unmodified _IPRHARQINTL_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;nc|ENSG00000106829|Q04727-3|TLE4;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;nc|ENSG00000106829|Q04727-2|TLE4;ENST00000462803.5_1_9:82286241-82340056:+|nuORF;ENSG00000196781|ENST00000376499|TLE1;ENST00000557815.1_1_15:70347348-70347768:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3;ENSG00000196781|ENST00000376499|TLE1;ENST00000557815.1_1_15:70347348-70347768:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2616577148438 3 440.261594 1317.76295 0.37112 0.00016339 0.099089 4.3625E-05 0.4702 0.00020701 440.26162778551435 22.847 0.24093 20.069 19.945 20.186 -2.7784 23 17 2 0 0 0 0.50268 1 12271 12271 16.275 5.7471 1 3813300 23987 5225;9870;15267 16268 16581 28307 28307 0.11678066085573846 IPRIEDGNNF 10 Unmodified _IPRIEDGNNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000560420.1_1_14:24606925-24607473:+|nuORF;ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000092010|ENST00000206451|PSME1;ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7960205078125 2 587.796195 1173.57784 0.85495 0.00050254 -0.088781 -5.2185E-05 0.76617 0.00045035 587.7960248604637 42.675 0.36275 42.675 42.507 42.87 0 49 18 4 0 0 0 0.017375 2 23064 23064;23177 78.06 43.659 1 77051000 23988 4327;1599 16269 16582 28308;28309 28308 -0.0020096150471999863 IPRIEDGNNF 10 Unmodified _IPRIEDGNNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000560420.1_1_14:24606925-24607473:+|nuORF;ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000092010|ENST00000206451|PSME1;ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7965087890625 2 587.796195 1173.57784 0.090208 5.3024E-05 0.035774 2.1028E-05 0.12598 7.4052E-05 587.7964042734434 42.966 0.23548 42.655 42.505 42.741 -0.31039 25 10 3 0 0 0 0.061704 1 22827 22827 55.235 27.606 1 10844000 23989 4327;1599 16269 16582 28310 28310 -0.0020096150471999863 IPRIEDGNNF 10 Unmodified _IPRIEDGNNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000560420.1_1_14:24606925-24607473:+|nuORF;ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000092010|ENST00000206451|PSME1;ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7967529296875 2 587.796195 1173.57784 0.82126 0.00048273 -0.24433 -0.00014362 0.57693 0.00033912 587.7959768021018 48.65 0.47794 43.254 42.98 43.458 -5.3961 78 28 4 0 0 0 0.021614 2 30322 30196;30322 74.2 46.571 1 190200000 23990 4327;1599 16269 16582 28311;28312 28312 -0.0020096150471999863 IPRIEDGNNF 10 Unmodified _IPRIEDGNNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1;ENST00000561142.5_1_14:24605441-24607359:+|nuORF;ENST00000560420.1_1_14:24606925-24607473:+|nuORF;ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000092010|ENST00000206451|PSME1;ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.796195 1173.57784 0.6259 0.0003679 -0.95948 -0.00056398 -0.33357 -0.00019607 587.794825327729 42.648 0.1044 42.64 42.561 42.665 -0.0088196 -0.01698 -0.0010681 NaN 78.06 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2594400 23991 4327;1599 16269 16582 -0.0020096150471999863 IPRIERTLAY 10 Unmodified _IPRIERTLAY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2429809570312 3 411.243429 1230.70846 NaN NaN NaN NaN NaN NaN NaN 42.222 1 42.213 41.713 42.713 -0.0088196 0 0 0 0.77204 1 22600 22600 13.519 6.4169 1 23992 1841 16270 16583 28313 28313 0.10233054214154436 IPRIERTLAY 10 Unmodified _IPRIERTLAY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2445373535156 3 411.243429 1230.70846 1.7409 0.00071593 -0.7176 -0.00029511 1.0233 0.00042082 411.2433619639565 47.595 0.31735 42.361 42.165 42.482 -5.2339 28 18 2 0 0 0 0.38026 1 29575 29575 22.775 8.5568 1 13911000 23993 1841 16270 16583 28314 28314 0.10233054214154436 IPRIERTLAY 10 Unmodified _IPRIERTLAY_ 0 0 0 ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D ENSG00000100554|ENST00000216442|ATP6V1D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.243429 1230.70846 -0.10234 -4.2086E-05 -0.52771 -0.00021702 -0.63005 -0.00025911 411.2431561595507 42.176 0.10758 42.167 42.101 42.208 -0.0088196 -0.097034 0.00019959 NaN 22.775 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 5377300 23994 1841 16270 16583 0.10233054214154436 IPRIFQILY 9 Unmodified _IPRIFQILY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8519897460938 2 581.852784 1161.69102 0.90907 0.00052894 0.010545 6.1358E-06 0.91961 0.00053508 581.8527992372098 89.926 0.27341 89.968 89.749 90.022 0.042183 16 9 2 0 0 0 0.091924 1 49998 49998 46.021 19.137 1 4450800 23995 4591 16271 16584 28315 28315 0.11663758679151215 IPRIFQILY 9 Unmodified _IPRIFQILY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8536987304688 2 581.852784 1161.69102 1.1717 0.00068174 -0.090848 -5.286E-05 1.0808 0.00062888 581.8526089005039 100.28 0.14131 94.103 94.03 94.171 -6.1757 20 8 3 0 0 0 0.044296 1 67029 67029 61.357 31.133 1 40478000 23996 4591 16271 16584 28316 28316 0.11663758679151215 IPRITWEH 8 Unmodified _IPRITWEH_ 0 0 0 nc|ENSG00000187764|Q92854-2|SEMA4D;ENSG00000187764|ENST00000422704|SEMA4D nc|ENSG00000187764|Q92854-2|SEMA4D nc|ENSG00000187764|Q92854-2|SEMA4D MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1941833496094 3 351.194298 1050.56106 1.7897 0.00062855 -0.53911 -0.00018933 1.2506 0.00043922 351.19400693074465 42.695 0.41889 38.01 37.807 38.226 -4.6846 63 27 3 0 0 0 0.71527 2 25726 25726;25854 12.241 3.2644 1 34404000 23997 9592 16272 16585 28317;28318 28317 0.03780582400008825 IPRKDTGLYY 10 Unmodified _IPRKDTGLYY_ 0 0 0 ENSG00000065615|ENST00000369681|CYB5R4 ENSG00000065615|ENST00000369681|CYB5R4 ENSG00000065615|ENST00000369681|CYB5R4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2237243652344 3 409.224034 1224.65027 0.94615 0.00038719 -1.1883 -0.00048628 -0.24215 -9.9095E-05 409.2231150169262 34.512 0.43302 30.416 30.25 30.683 -4.0951 43 25 2 0 0 0 0.57893 1 20002 20002 10.899 2.1472 1 15269000 23998 911 16273 16586 28319 28319 0.04693372568840459 IPRLERILL 9 Unmodified _IPRLERILL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.9162902832031 3 374.916764 1121.72846 0.27262 0.00010221 -0.12086 -4.5311E-05 0.15177 5.69E-05 374.9166250462825 62.535 0.39441 62.514 62.284 62.678 -0.021618 48 20 3 0 0 0 0.078314 1 34123 34123 35.612 11.822 1 37466000 23999 10851 16274 16587 28320 28320 0.1724684994474046 IPRLERILL 9 Unmodified _IPRLERILL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.9171142578125 3 374.916764 1121.72846 1.6103 0.00060371 -0.32453 -0.00012167 1.2857 0.00048204 374.91662408185016 94.682 0.32682 88.506 88.315 88.642 -6.1757 60 18 4 0 0 0 0.040683 2 62655 62655;62780 46.022 12.577 1 129880000 24000 10851 16274 16587 28321;28322 28321 0.1724684994474046 IPRLERILL 9 Unmodified _IPRLERILL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.871826171875 2 561.871508 1121.72846 1.2808 0.00071965 -0.54291 -0.00030505 0.7379 0.00041461 561.8711642473834 94.677 0.2783 88.501 88.332 88.61 -6.1757 38 15 3 0 0 0 0.01958 1 62695 62695 63.961 21.866 1 36728000 24001 10851 16274 16587 28323 28323 0.1724684994474046 IPRLIVSQL 9 Unmodified _IPRLIVSQL_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-4|FANCD2;ENST00000438741.1_1_3:10076402-10082221:+|nuORF nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3004760742188 2 519.837134 1037.65972 0.43135 0.00022423 0.3429 0.00017825 0.77425 0.00040248 519.8374559203498 67.263 0.25037 67.281 67.143 67.394 0.018036 28 12 3 0 0 0 0.17331 1 36905 36905 22.736 8.8302 1 2462800 24002 5618 16275 16588 28324 28324 0.14239185645033103 IPRLREILM 9 Unmodified _IPRLREILM_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.9031066894531 3 380.902238 1139.68488 1.5432 0.00058782 0.34901 0.00013294 1.8922 0.00072076 380.9024170977415 95.144 0.13007 88.968 88.891 89.021 -6.1757 14 6 3 0 0 0 0.30202 1 63033 63033 12.175 2.6308 1 9044600 24003 983 16276 16589 28325 28325 0.12062917175944676 IPRLVDPIL 9 Unmodified _IPRLVDPIL_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.222412109375 2 518.331685 1034.64882 0.8722 0.00045209 0.41113 0.0002131 1.2833 0.00066519 518.3321274161032 80.064 0.28394 79.575 79.428 79.712 -0.48932 15 10 2 0 0 0 0.19613 1 43874 43874 7.9102 4.3137 1 399940 + 24004 17662 16277 16590 28326 28326 0.1328778327076634 IPRNPPPRL 9 Unmodified _IPRNPPPRL_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8854675292969 3 353.885576 1058.6349 0.12107 4.2845E-05 0.39263 0.00013895 0.5137 0.00018179 353.8858100846272 26.411 0.31117 26.438 26.256 26.567 0.026951 24 13 2 0 0 0 0.25681 2 13657 13657;13750 18.373 10.428 1 2799100 24005 1049;5339 16278 16591 28327;28328 28327 0.10792550562291581 IPRNWNDRIRM 11 Unmodified _IPRNWNDRIRM_ 0 0 0 REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.9304504394531 3 490.929738 1469.76739 0.59058 0.00028993 -0.77816 -0.00038202 -0.18759 -9.2092E-05 490.9293567059016 62.164 0.30984 62.131 61.946 62.256 -0.032787 50 15 4 0 0 0 0.67892 1 33893 33893 6.2344 1.0359 1 46013000 + 24006 18086 16279 16592 28329 28329 0.05129207236791444 IPRNWNDRIRM 11 Unmodified _IPRNWNDRIRM_ 0 0 0 REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2650146484375 3 490.929738 1469.76739 0.88557 0.00043475 0.13096 6.4293E-05 1.0165 0.00049905 491.2642868033773 81.726 0.73831 75.551 75.247 75.986 -6.1757 142 41 4 0 0 0 0.69838 2 53595 53595;53728 4.4062 0.81348 1 65807000 + 24007 18086 16279 16592 28330;28331 28330 0.05129207236791444 IPRNWNDRIRM 11 Unmodified _IPRNWNDRIRM_ 0 0 0 REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF REV__ENST00000557566.1_1_14:78045296-78063654:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 490.929738 1469.76739 0.59058 0.00028993 -0.77816 -0.00038202 -0.18759 -9.2092E-05 490.9293567059016 62.164 0.30984 62.131 61.946 62.256 -0.032787 0.01286 0.00052119 NaN 6.2344 50 15 4 NaN NaN NaN NaN 0 NaN NaN 0 46013000 + 24008 18086 16279 16592 0.05129207236791444 IPRPVDGVEV 10 Unmodified _IPRPVDGVEV_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.307861328125 2 540.806031 1079.59751 -0.093387 -5.0504E-05 0.42095 0.00022765 0.32756 0.00017715 540.806231968731 44.452 0.17651 44.452 44.375 44.552 0 14 8 2 0 0 0 0.087164 1 24180 24180 49.527 15.126 1 13118000 24009 860 16280 16593 28332 28332 0.060894145060501614 IPRQVAQTL 9 Unmodified _IPRQVAQTL_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.309326171875 2 513.308741 1024.60293 -0.60113 -0.00030856 1.417 0.00072735 0.81586 0.00041879 513.3094357678374 36.31 0.24522 36.06 35.927 36.172 -0.2497 23 10 3 0 0 0 0.010611 1 19039 19039 78.728 23.954 1 4785000 24010 5283 16281 16594 28333 28333 0.09161138088529697 IPRQVAQTL 9 Unmodified _IPRQVAQTL_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.30908203125 2 513.308741 1024.60293 1.0713 0.00054993 -0.14708 -7.5499E-05 0.92426 0.00047443 513.3086157470275 40.846 0.43027 36.307 36.088 36.518 -4.5388 55 26 3 0 0 0 0.020973 2 24484 24348;24484 62.573 18.234 1 23403000 24011 5283 16281 16594 28334;28335 28335 0.09161138088529697 IPRQVLKYDDF 11 Unmodified _IPRQVLKYDDF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2530517578125 3 465.253993 1392.74015 0.39436 0.00018348 -0.24928 -0.00011598 0.14508 6.75E-05 465.5881296740716 48.219 0.25458 47.866 47.71 47.964 -0.3526 37 12 4 0 0 0 0.25257 1 25837 25837 29.291 4.1365 1 15567000 24012 8498 16282 16595 28336 28336 0.05949002177408147 IPRQVLKYDDF 11 Unmodified _IPRQVLKYDDF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2534790039062 3 465.253993 1392.74015 0.4832 0.00022481 -0.81215 -0.00037786 -0.32896 -0.00015305 465.58788571807577 47.939 0.30355 47.9 47.743 48.047 -0.038643 25 14 3 0 0 0 0.070386 1 25847 25847 46.475 26.064 1 5291400 24013 8498 16282 16595 28337 28337 0.05949002177408147 IPRQVLKYDDF 11 Unmodified _IPRQVLKYDDF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2542724609375 3 465.253993 1392.74015 0.77966 0.00036274 0.047782 2.2231E-05 0.82745 0.00038497 465.2541039344708 53.438 0.26398 47.634 47.481 47.745 -5.8042 29 16 2 0 0 0 0.061194 1 33732 33732 48.468 9.0555 1 33548000 24014 8498 16282 16595 28338 28338 0.05949002177408147 IPRRPGALDGL 11 Unmodified _IPRRPGALDGL_ 0 0 0 ENSG00000161671|ENST00000334976|EMC10;nc|ENSG00000161671|Q5UCC4-2|EMC10 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.9002075195312 3 388.899773 1163.67749 -0.21639 -8.4155E-05 0.90868 0.00035339 0.69229 0.00026923 388.900136436912 37.356 0.27882 37.378 37.24 37.519 0.021545 27 12 3 0 0 0 0.42108 1 19823 19823 12.228 5.1905 1 4243100 24015 6803 16283 16596 28339 28339 0.10219900899892309 IPRRQEHDISL 11 Unmodified _IPRRQEHDISL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2525024414062 3 455.252875 1362.7368 -0.002616 -1.1909E-06 -0.082731 -3.7663E-05 -0.085347 -3.8854E-05 455.2527796114794 24.648 0.29266 24.648 24.531 24.823 0 47 16 4 0 0 0 0.64126 1 12577 12577 9.2438 2.2067 1 3291100 24016 3879 16284 16597 28340 28340 0.06993752123435115 IPRRQEHDISL 11 Unmodified _IPRRQEHDISL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2535705566406 3 455.252875 1362.7368 0.5181 0.00023587 0.26735 0.00012171 0.78545 0.00035758 455.2530197434071 27.637 0.38984 24.601 24.395 24.785 -3.0365 46 19 3 0 0 0 0.21145 2 15393 15277;15393 31.462 7.3994 1 26997000 24017 3879 16284 16597 28341;28342 28342 0.06993752123435115 IPRRTQLLF 9 Unmodified _IPRRTQLLF_ 0 0 0 REV__ENSG00000162368|ENST00000371873|CMPK1 REV__ENSG00000162368|ENST00000371873|CMPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.9046630859375 3 381.904747 1142.69241 -0.18549 -7.0841E-05 0.83863 0.00032028 0.65314 0.00024944 381.9049926934709 51.31 0.23795 51.256 51.087 51.325 -0.053871 19 11 2 0 0 0 0.54213 1 27782 27782 4.897 0.70751 1 2173300 + 24018 21635 16285 16598 28343 28343 0.12677392767886886 IPRSFEYLF 9 Unmodified _IPRSFEYLF_ 0 0 0 nc|ENSG00000163808|Q9NS87-4|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15 nc|ENSG00000163808|Q9NS87-4|KIF15 nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3130493164062 2 586.310949 1170.60735 0.39492 0.00023155 2.0122 0.0011798 2.4071 0.0014113 586.3113406625363 77.645 0.26411 77.695 77.51 77.774 0.050102 30 10 4 0 0 0 0.13639 1 42835 42835 24.991 6.856 1 4187900 24019 7072 16286 16599 28344 28344 0.02886602511421188 IPRSFRHLSF 10 Unmodified _IPRSFRHLSF_ 0 0 0 nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5713195800781 3 420.571768 1258.69348 0.4152 0.00017462 -0.26621 -0.00011196 0.14899 6.2661E-05 420.5716222829084 84.965 0.31682 78.789 78.675 78.992 -6.1757 23 18 2 0 0 0 0.17253 1 55981 55981 32.616 12.63 1 9978900 24020 9439 16287 16600 28345 28345 0.07447607136782608 IPRSILMTTF 10 Oxidation (M) _IPRSILM(Oxidation (M))TTF_ IPRSILM(1)TTF IPRSILM(42)TTF 0 0 1 ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8310546875 2 597.831191 1193.64783 0.48495 0.00028992 -0.91178 -0.00054509 -0.42683 -0.00025517 597.8306455375338 63.487 0.3597 63.465 63.259 63.618 -0.021618 37 17 3 0 0 0 0.13008 1 34742 34742 42.312 16.913 1 8394200 24021 7694 16288 16601 28346 28346 1313 0.058752008395231314 IPRSLEVIL 9 Unmodified _IPRSLEVIL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3291625976562 2 520.329142 1038.64373 1.166 0.00060672 -0.31488 -0.00016384 0.85116 0.00044288 520.3289436200399 92.133 0.98328 85.957 85.416 86.399 -6.1757 91 57 2 0 0 0 0.032796 2 60961 60837;60961 53.833 10.06 1 18221000 24022 1177 16289 16602 28347;28348 28348 0.12595479408128085 IPRSPFKVKVL 11 Unmodified _IPRSPFKVKVL_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.6119384765625 3 428.611452 1282.81253 1.3596 0.00058276 -0.43379 -0.00018593 0.92585 0.00039683 428.6110560000789 86.516 0.72079 80.34 79.94 80.661 -6.1757 78 38 3 0 0 0 0.048301 3 56997 56867;56997;57122 51.264 26.307 1 31383000 24023 16209;15895 16290 16603 28349;28350;28351 28350 0.18243381041634166 IPRSRANIAL 10 Unmodified _IPRSRANIAL_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.8963928222656 3 370.896252 1109.66693 -0.26065 -9.6675E-05 0.082002 3.0414E-05 -0.17865 -6.6261E-05 370.896368582175 31.496 0.32099 31.526 31.391 31.712 0.030106 22 14 2 0 0 0 0.62665 1 16523 16523 9.7643 1.3199 1 5463100 24024 10089 16291 16604 28352 28352 0.11647918245444089 IPRSRANIAL 10 Unmodified _IPRSRANIAL_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8968200683594 3 370.896252 1109.66693 1.1769 0.0004365 -0.31741 -0.00011773 0.85946 0.00031877 370.89624469928583 35.387 0.32834 31.292 31.12 31.449 -4.0951 46 19 3 0 0 0 0.5543 1 20519 20519 13.519 2.6197 1 19777000 24025 10089 16291 16604 28353 28353 0.11647918245444089 IPRSRANIAL 10 Unmodified _IPRSRANIAL_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8417358398438 2 555.840739 1109.66693 0.65935 0.0003665 -0.17602 -9.7837E-05 0.48334 0.00026866 555.8406835911893 35.417 0.20945 31.238 31.091 31.3 -4.1788 17 12 2 0 0 0 0.43662 1 20540 20540 22.736 8.8302 1 6911800 24026 10089 16291 16604 28354 28354 0.11647918245444089 IPRVVQEGDVL 11 Unmodified _IPRVVQEGDVL_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.8518676757812 2 612.85097 1223.68739 0.67608 0.00041433 0.15679 9.6088E-05 0.83286 0.00051042 612.8511240656375 51.443 0.19614 51.443 51.326 51.522 0 18 8 3 0 0 0 0.15928 1 28428 28428 35.612 11.822 1 2818100 24027 3803 16292 16605 28355 28355 0.08449044114627213 IPRVVQEGDVL 11 Unmodified _IPRVVQEGDVL_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8519287109375 2 612.85097 1223.68739 0.90522 0.00055476 -0.038252 -2.3443E-05 0.86697 0.00053132 612.851299836669 58.308 0.27803 52.234 52.093 52.371 -6.0745 18 14 2 0 0 0 0.15928 1 37387 37387 35.612 0.68019 1 11722000 24028 3803 16292 16605 28356 28356 0.08449044114627213 IPRVYKGKY 9 Unmodified _IPRVYKGKY_ 0 0 0 ENST00000472616.1_1_7:139790896-139796717:-|nuORF ENST00000472616.1_1_7:139790896-139796717:-|nuORF ENST00000472616.1_1_7:139790896-139796717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3344116210938 2 562.334759 1122.65496 -0.13807 -7.7642E-05 -1.0773 -0.00060582 -1.2154 -0.00068346 562.3341257417983 104.5 0.039192 104.45 104.44 104.47 -0.048737 7 4 2 0 0 0 0.61855 1 58023 58023 0.52476 0.52476 1 8546000 24029 13909 16293 16606 28357 28357 0.09854301502286944 IPRYIISQL 9 Unmodified _IPRYIISQL_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8344116210938 2 551.834591 1101.65463 1.033 0.00057005 -0.48872 -0.00026969 0.54429 0.00030036 551.8342483575173 64.023 0.31076 64.012 63.825 64.135 -0.010529 33 15 3 0 0 0 0.014182 1 35015 35015 85.642 41.783 1 5386800 24030 996 16294 16607 28358 28358 0.10786881782428281 IPRYIVSQL 9 Unmodified _IPRYIVSQL_ 0 0 0 nc|ENSG00000086015|Q6P0Q8-2|MAST2;ENSG00000086015|ENST00000361297|MAST2 nc|ENSG00000086015|Q6P0Q8-2|MAST2 nc|ENSG00000086015|Q6P0Q8-2|MAST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.826904296875 2 544.826766 1087.63898 0.78552 0.00042797 0.20892 0.00011382 0.99444 0.0005418 544.826862519511 57.551 0.35522 57.485 57.339 57.694 -0.066036 31 17 2 0 0 0 0.020973 2 31305 31305;31408 62.573 17.504 1 8848900 24031 1426 16295 16608 28359;28360 28359 0.09866595265361866 IPRYYFNRQ 9 Unmodified _IPRYYFNRQ_ 0 0 0 REV__chr2:127388998-127389111|179|22.42|0.0|21.1|+|1|MAP3K2-DT,MAP3K2-DT|1 REV__chr2:127388998-127389111|179|22.42|0.0|21.1|+|1|MAP3K2-DT,MAP3K2-DT|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.834228515625 2 628.830372 1255.64619 NaN NaN NaN NaN NaN NaN NaN 91.74 1 91.74 91.24 92.24 0 0 0 0 0.85798 1 50733 50733 0.52476 0.066424 1 + 24032 16797 16296 16609 28361 28361 0.028593278657808696 IPSAAGRY 8 Unmodified _IPSAAGRY_ 0 0 0 ENSG00000184933|ENST00000641196|OR6A2 ENSG00000184933|ENST00000641196|OR6A2 ENSG00000184933|ENST00000641196|OR6A2 MSMS AL20221201_MKP_PDAC_01 4 417.7279968261719 2 417.727052 833.439552 NaN NaN NaN NaN NaN NaN NaN 24.02 1 21.193 20.693 21.693 -2.8273 0 0 0 0.7268 1 13043 13043 26.884 7.6267 1 24033 9304 16297 16610 28362 28362 0.016169600374723814 IPSADRHKSKL 11 Unmodified _IPSADRHKSKL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.2449645996094 3 417.910449 1250.70952 0.45056 0.00018829 0.33309 0.0001392 0.78366 0.0003275 417.91064998892614 14.718 0.094171 12.215 12.163 12.257 -2.5029 24 15 2 0 0 0 0.46627 1 7483 7483 18.122 8.1053 1 2572300 24034 4284 16298 16611 28363 28363 0.0941926858304214 IPSAGGKYKA 10 Unmodified _IPSAGGKYKA_ 0 0 0 ENSG00000170920|ENST00000305444|OR7G3 ENSG00000170920|ENST00000305444|OR7G3 ENSG00000170920|ENST00000305444|OR7G3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2824401855469 2 496.282192 990.549831 NaN NaN NaN NaN NaN NaN NaN 44.981 1 44.959 44.459 45.459 -0.022064 0 0 0 0.59691 1 24147 24147 21.537 0.66577 1 24035 8043 16299 16612 28364 28364 0.05417760305851971 IPSATGHQKTF 11 Unmodified _IPSATGHQKTF_ 0 0 0 ENSG00000221931|ENST00000327930|OR6X1 ENSG00000221931|ENST00000327930|OR6X1 ENSG00000221931|ENST00000327930|OR6X1 MSMS AL20221201_MKP_PDAC_01 4 593.8128051757812 2 593.814387 1185.61422 NaN NaN NaN NaN NaN NaN NaN 39.575 1 35.124 34.624 35.624 -4.4509 0 0 0 0.39541 1 23509 23509 28.495 0.86571 1 24036 10561 16300 16613 28365 28365 0.028839153919761884 IPSCLHRNRRP 11 Unmodified _IPSCLHRNRRP_ 0 0 0 REV__ENST00000514156.1_1_1:16103511-16111153:+|nuORF REV__ENST00000514156.1_1_1:16103511-16111153:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.8723754882812 2 674.872579 1347.73061 -0.35103 -0.0002369 -0.10842 -7.3171E-05 -0.45945 -0.00031007 674.8725259611923 77.061 0.4226 76.582 76.365 76.787 -0.47945 45 18 3 0 0 0 0.63851 2 42133 42133;42238 9.3831 0.63772 1 2671200 + 24037 28190 16301 16614 28366;28367 28366 0.070649554108968 IPSDLACRL 9 Carbamidomethyl (C) _IPSDLAC(Carbamidomethyl (C))RL_ IPSDLAC(1)RL IPSDLAC(93)RL 0 1 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7783813476562 2 522.778959 1043.54336 0.8767 0.00045832 -0.23473 -0.00012271 0.64198 0.00033561 522.7787231528073 53.44 0.39574 47.636 47.419 47.815 -5.8042 43 23 3 0 0 0 0.0082475 1 33684 33684 92.653 36.476 1 53510000 24038 1860 16302 16615 28368 28368 179 0.023334990828061564 IPSDTDFRIY 10 Unmodified _IPSDTDFRIY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.8049926757812 2 613.806228 1225.5979 NaN NaN NaN NaN NaN NaN NaN 57.74 1 57.25 56.75 57.75 -0.48974 0 0 0 0.62876 1 31383 31383 22.658 9.6156 1 24039 1687 16303 16616 28369 28369 -0.005872105647313219 IPSDTTKYL 9 Unmodified _IPSDTTKYL_ 0 0 0 nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-2|PTPRD nc|ENSG00000153707|P23468-2|PTPRD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.75244140625 2 519.279315 1036.54408 0.88928 0.00046178 1.3936 0.00072367 2.2829 0.0011855 519.2798083669551 75.43 1.0378 69.254 68.679 69.717 -6.1757 97 55 3 0 0 0 0.16418 1 48957 48957 25.399 4.9457 1 20132000 24040 6271 16304 16617 28370 28370 0.027266170035318282 IPSEAELNY 9 Unmodified _IPSEAELNY_ 0 0 0 ENSG00000129595|ENST00000261486|EPB41L4A;ENST00000511405.1_1_5:111575355-111600594:-|nuORF ENSG00000129595|ENST00000261486|EPB41L4A ENSG00000129595|ENST00000261486|EPB41L4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2535400390625 2 518.253297 1034.49204 0.66042 0.00034226 0.48122 0.00024939 1.1416 0.00059166 518.2541241663541 47.481 0.49561 47.481 47.149 47.644 0 36 22 2 0 0 0 0.19127 1 25965 25965 24.021 1.2843 1 4969700 24041 4152 16305 16618 28371 28371 -0.023825464102401384 IPSEDIARNLM 11 Oxidation (M) _IPSEDIARNLM(Oxidation (M))_ IPSEDIARNLM(1) IPSEDIARNLM(48) 0 0 1 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.8247680664062 2 637.824095 1273.63364 0.04286 2.7337E-05 0.33855 0.00021594 0.38141 0.00024327 637.824357312714 43.278 0.27576 43.278 43.162 43.438 0 22 13 2 0 0 0 0.06459 1 23499 23499 47.732 20.103 1 3738600 24042 941 16306 16619 28372 28372 147 0.007765036205682918 IPSEDIARNLM 11 Unmodified _IPSEDIARNLM_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8269653320312 2 629.826637 1257.63872 0.78321 0.00049328 -0.17859 -0.00011248 0.60462 0.00038081 629.8266644129839 63.032 0.36649 56.856 56.653 57.019 -6.1757 30 18 2 0 0 0 1.267E-08 1 40726 40726 107.56 52.061 1 14547000 24043 941 16306 16620 28373 28373 0.0202080748319986 IPSELFSSF 9 Unmodified _IPSELFSSF_ 0 0 0 ENSG00000132953|ENST00000255305|XPO4 ENSG00000132953|ENST00000255305|XPO4 ENSG00000132953|ENST00000255305|XPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7613525390625 2 513.760758 1025.50696 0.42431 0.00021799 -0.0030241 -1.5537E-06 0.42129 0.00021644 513.760861947621 84.974 0.2798 84.472 84.226 84.505 -0.5015 16 11 2 0 0 0 0.41742 1 46452 46452 11.64 3.7301 1 704560 24044 4469 16307 16621 28374 28374 -0.00477054542238875 IPSEPLLGL 9 Unmodified _IPSEPLLGL_ 0 0 0 ENST00000506267.1_2_4:174255326-174255392:-|nuORF ENST00000506267.1_2_4:174255326-174255392:-|nuORF ENST00000506267.1_2_4:174255326-174255392:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.5587768554688 1 938.55571 937.548434 -0.075687 -7.1037E-05 2.2451 0.0021072 2.1694 0.0020361 938.557794403669 70.241 0.24878 70.241 70.153 70.402 0 18 10 2 0 0 0 0.41742 1 39221 39221 11.64 3.7301 1 1275400 24045 14520 16308 16622 28375 28375 0.07716126217110286 IPSESIAC 8 Unmodified _IPSESIAC_ 0 0 0 ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.1994323730469 2 410.199479 818.384405 NaN NaN NaN NaN NaN NaN NaN 31.247 1 31.144 30.644 31.644 -0.10269 0 0 0 0.97444 1 16237 16237 2.3027 0 1 24046 9784 16309 16623 28376 28376 -0.032052145453235426 IPSFLKIVL 9 Unmodified _IPSFLKIVL_ 0 0 0 ENST00000379607.9_1_X:20146365-20150302:-|nuORF ENST00000379607.9_1_X:20146365-20150302:-|nuORF ENST00000379607.9_1_X:20146365-20150302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3408813476562 2 515.338978 1028.6634 2.3927 0.0012331 -0.43263 -0.00022295 1.9601 0.0010101 515.3388381845493 95.958 0.2928 95.962 95.764 96.057 0.004158 19 10 2 0 0 0 0.044011 1 53289 53289 47.749 13.347 1 1911000 24047 12571 16310 16624 28377 28377 0.1502185541887684 IPSFLKIVL 9 Unmodified _IPSFLKIVL_ 0 0 0 ENST00000379607.9_1_X:20146365-20150302:-|nuORF ENST00000379607.9_1_X:20146365-20150302:-|nuORF ENST00000379607.9_1_X:20146365-20150302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3394165039062 2 515.338978 1028.6634 1.0086 0.00051978 0.38055 0.00019611 1.3892 0.00071589 515.3390091774871 100.46 0.11707 94.28 94.228 94.345 -6.1757 9 6 2 0 0 0 0.0089732 1 67200 67200 86.332 30.155 1 23960000 24048 12571 16310 16624 28378 28378 0.1502185541887684 IPSGPFKYHF 10 Unmodified _IPSGPFKYHF_ 0 0 0 ENST00000492875.1_1_9:117108020-117109048:-|nuORF ENST00000492875.1_1_9:117108020-117109048:-|nuORF ENST00000492875.1_1_9:117108020-117109048:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8129272460938 2 596.811116 1191.60768 NaN NaN NaN NaN NaN NaN NaN 93.366 1 93.389 92.889 93.889 0.022987 0 0 0 0.97044 1 51910 51910 7.2892 4.0079 1 24049 14300 16311 16625 28379 28379 0.01954022231257113 IPSGSVTAL 9 Unmodified _IPSGSVTAL_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.4752807617188 1 844.47746 843.470183 0.42442 0.00035842 0.58176 0.00049128 1.0062 0.0008497 844.4774022025082 47.863 0.39421 47.863 47.601 47.995 0 23 18 2 0 0 0 0.019303 1 26164 26164 64.236 6.765 1 1141900 24050 4741 16312 16626 28380 28380 0.04218693631844417 IPSGTLEASF 10 Unmodified _IPSGTLEASF_ 0 0 0 ENSG00000183397|ENST00000329493|TEKTIP1 ENSG00000183397|ENST00000329493|TEKTIP1 ENSG00000183397|ENST00000329493|TEKTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2637939453125 2 511.263665 1020.51278 0.4708 0.00024071 -0.4375 -0.00022368 0.033303 1.7026E-05 511.2633901383536 67.988 0.40646 67.505 67.208 67.615 -0.48218 45 18 3 0 0 0 0.50944 1 37167 37167 15.847 4.2069 1 5241700 24051 9146 16313 16627 28381 28381 0.003340439694284214 IPSIRNGIL 9 Unmodified _IPSIRNGIL_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8062438964844 2 491.805834 981.597115 -0.19275 -9.4795E-05 0.23595 0.00011604 0.043203 2.1247E-05 491.8058901696753 56.112 0.28966 56.043 55.885 56.174 -0.068741 35 14 3 0 0 0 0.044011 1 30472 30472 47.749 7.7914 1 20171000 24052 3790 16314 16628 28382 28382 0.10558039576847023 IPSIRNGIL 9 Unmodified _IPSIRNGIL_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.8058471679688 2 491.805834 981.597115 0.50634 0.00024902 0.045786 2.2518E-05 0.55212 0.00027154 491.8058422633191 62.012 0.36951 55.837 55.597 55.966 -6.1757 34 20 2 0 0 0 0.078314 1 39992 39992 38.176 3.7738 1 37683000 24053 3790 16314 16628 28383 28383 0.10558039576847023 IPSKTSAKY 9 Unmodified _IPSKTSAKY_ 0 0 0 nc|ENSG00000108684|Q16515|ASIC2;ENSG00000108684|ENST00000225823|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7827758789062 2 497.782025 993.549496 1.4204 0.00070707 0.3038 0.00015123 1.7242 0.0008583 497.78202825210894 82.381 0.36573 82.443 82.244 82.61 0.062004 23 13 2 0 0 0 0.07916 1 45591 45591 37.974 3.8716 1 5592900 24054 2598 16315 16629 28384 28384 0.05246340585995313 IPSKTSAKY 9 Unmodified _IPSKTSAKY_ 0 0 0 nc|ENSG00000108684|Q16515|ASIC2;ENSG00000108684|ENST00000225823|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.782025 993.549496 0.47491 0.0002364 1.224 0.0006093 1.6989 0.0008457 497.78232858657884 83.042 0.41328 82.545 82.284 82.698 -0.49751 0.050774 0.00043767 NaN 37.974 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2917100 24055 2598 16315 16629 0.05246340585995313 IPSKTSAKY 9 Unmodified _IPSKTSAKY_ 0 0 0 nc|ENSG00000108684|Q16515|ASIC2;ENSG00000108684|ENST00000225823|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 nc|ENSG00000108684|Q16515|ASIC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.782025 993.549496 1.4204 0.00070707 0.3038 0.00015123 1.7242 0.0008583 497.78202825210894 82.381 0.36573 82.443 82.244 82.61 0.062004 -0.050774 -0.00047847 NaN 37.974 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5592900 24056 2598 16315 16629 0.05246340585995313 IPSLPETFF 9 Unmodified _IPSLPETFF_ 0 0 0 ENSG00000171561|ENST00000641541|OR2AT4 ENSG00000171561|ENST00000641541|OR2AT4 ENSG00000171561|ENST00000641541|OR2AT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.779541015625 2 525.778951 1049.54335 0.40192 0.00021132 0.92531 0.00048651 1.3272 0.00069783 525.7790152940349 85.326 0.34772 84.824 84.661 85.008 -0.5015 44 30 2 0 0 0 0.12841 1 46657 46657 30.225 9.3536 1 4971800 24057 8115 16316 16630 28385 28385 0.02055822354486736 IPSLSIFTL 9 Unmodified _IPSLSIFTL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.5883178710938 1 990.58701 989.579734 0.77452 0.00076723 0.50934 0.00050455 1.2839 0.0012718 990.5874156317442 101.5 0.09906 95.32 95.274 95.373 -6.1757 6 4 2 0 0 0 0.0082281 2 68124 68073;68124 92.822 11.209 1 10692000 24058 2482 16317 16631 28386;28387 28387 0.08452699251199647 IPSNPLEA 8 Unmodified _IPSNPLEA_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.4478149414062 1 840.44616 839.438883 0.84979 0.0007142 0.27506 0.00023117 1.1249 0.00094538 840.4461690068824 62.286 0.47758 56.111 55.921 56.398 -6.1757 58 26 3 0 0 0 0.18875 1 40096 40096 74.423 0 1 83165000 24059 5825 16318 16632 28388 28388 0.01274120597770434 IPSNSSSAL 9 Unmodified _IPSNSSSAL_ 0 0 0 REV__ENSG00000144909|ENST00000296220|OSBPL11 REV__ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.4456787109375 1 875.446888 874.439611 0.36608 0.00032048 -0.25377 -0.00022217 0.1123 9.8315E-05 875.4467580442035 38.431 0.19145 38.431 38.344 38.535 0 19 13 2 0 0 0 0.0086904 1 20524 20524 107.19 0.24686 1 3551400 + 24060 20746 16319 16633 28389 28389 -0.0026308475319183344 IPSNSSSAL 9 Unmodified _IPSNSSSAL_ 0 0 0 REV__ENSG00000144909|ENST00000296220|OSBPL11 REV__ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.22705078125 2 438.227082 874.439611 0.4849 0.00021249 -1.211 -0.0005307 -0.72613 -0.00031821 438.2265395095352 38.395 0.16977 38.395 38.366 38.535 0 13 11 2 0 0 0 0.06187 1 20545 20545 42.095 2.1372 1 3316400 + 24061 20746 16319 16633 28390 28390 -0.0026308475319183344 IPSNSSSAL 9 Unmodified _IPSNSSSAL_ 0 0 0 REV__ENSG00000144909|ENST00000296220|OSBPL11 REV__ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.446533203125 1 875.446888 874.439611 0.52215 0.00045712 0.092749 8.1197E-05 0.6149 0.00053831 875.4467295785508 45.033 0.33609 40.181 40.036 40.372 -4.852 30 21 2 0 0 0 0.0086904 1 27672 27672 107.19 0.24686 1 10026000 + 24062 20746 16319 16633 28391 28391 -0.0026308475319183344 IPSNSSSAL 9 Unmodified _IPSNSSSAL_ 0 0 0 REV__ENSG00000144909|ENST00000296220|OSBPL11 REV__ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 875.446888 874.439611 0.36608 0.00032048 -0.25377 -0.00022217 0.1123 9.8315E-05 875.4467580442035 38.431 0.19145 38.431 38.344 38.535 0 0 0 NaN 107.19 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3551400 + 24063 20746 16319 16633 -0.0026308475319183344 IPSPGLMVF 9 Oxidation (M) _IPSPGLM(Oxidation (M))VF_ IPSPGLM(1)VF IPSPGLM(71)VF 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7623901367188 2 488.762246 975.50994 0.45601 0.00022288 0.3755 0.00018353 0.83151 0.00040641 488.7622849955156 75.689 0.32927 75.737 75.559 75.888 0.047943 34 14 3 0 0 0 0.013472 1 41738 41738 70.716 19.86 1 4393400 24064 1007 16320 16634 28392 28392 168 0.021204973109320235 IPSPGLMVF 9 Oxidation (M) _IPSPGLM(Oxidation (M))VF_ IPSPGLM(1)VF IPSPGLM(54)VF 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7640991210938 2 488.762246 975.50994 0.925 0.0004521 0.62234 0.00030417 1.5473 0.00075628 488.76210432548226 83.21 0.74069 77.035 76.747 77.487 -6.1757 66 39 2 0 0 0 0.03327 1 54644 54644 53.576 28.902 1 14692000 24065 1007 16320 16634 28393 28393 168 0.021204973109320235 IPSPGLMVF 9 Unmodified _IPSPGLMVF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3;nc|ENSG00000069849|P54709-2|ATP1B3;ENST00000465172.5_1_3:141595540-141640837:+|nuORF ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 480.7921447753906 2 480.764789 959.515025 1.0873 0.00052275 -0.67276 -0.00032344 0.41458 0.00019932 480.76454396353756 99.303 0.19514 93.128 93.048 93.243 -6.1757 14 12 2 0 0 0 0.030883 1 66077 66077 60.39 26.202 1 12549000 24066 1007 16320 16635 28394 28394 0.033648011735408545 IPSPIVHQPF 10 Unmodified _IPSPIVHQPF_ 0 0 0 ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF ENST00000539828.6_1_16:68119591-68225707:+|nuORF ENST00000539828.6_1_16:68119591-68225707:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8213500976562 2 567.818941 1133.62333 NaN NaN NaN NaN NaN NaN NaN 43.884 1 43.868 43.368 44.368 -0.015667 0 0 0 0.66191 1 23528 23528 28.487 14.581 1 24067 1091 16321 16636 28395 28395 0.06186308748328884 IPSPLQPEM 9 Oxidation (M) _IPSPLQPEM(Oxidation (M))_ IPSPLQPEM(1) IPSPLQPEM(59) 0 0 1 ENST00000590890.1_1_19:36244761-36245221:+|nuORF;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000595455.1_1_19:36244761-36245372:+|nuORF;ENSG00000267796|ENST00000301159|LIN37 ENST00000590890.1_1_19:36244761-36245221:+|nuORF ENST00000590890.1_1_19:36244761-36245221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2607421875 2 514.260068 1026.50558 0.17147 8.8181E-05 -0.30124 -0.00015492 -0.12977 -6.6736E-05 514.2600655111551 47.059 0.43197 47.059 46.858 47.29 0 33 20 2 0 0 0 0.024882 1 25692 25692 58.679 38.225 1 10601000 24068 10869 16322 16637 28396 28396 1733 -0.006610119026390748 IPSPLQPEM 9 Oxidation (M) _IPSPLQPEM(Oxidation (M))_ IPSPLQPEM(1) IPSPLQPEM(78) 0 0 1 ENST00000590890.1_1_19:36244761-36245221:+|nuORF;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000595455.1_1_19:36244761-36245372:+|nuORF;ENSG00000267796|ENST00000301159|LIN37 ENST00000590890.1_1_19:36244761-36245221:+|nuORF ENST00000590890.1_1_19:36244761-36245221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2599487304688 2 514.260068 1026.50558 0.59237 0.00030463 -0.038345 -1.972E-05 0.55403 0.00028491 514.260197484945 47.4 0.34295 47.048 46.86 47.203 -0.3526 27 16 2 0 0 0 0.010818 1 25421 25421 78.149 51.266 1 4084000 24069 10869 16322 16637 28397 28397 1733 -0.006610119026390748 IPSPLQPEM 9 Oxidation (M) _IPSPLQPEM(Oxidation (M))_ IPSPLQPEM(1) IPSPLQPEM(100) 0 0 1 ENST00000590890.1_1_19:36244761-36245221:+|nuORF;ENST00000587108.5_1_19:36243860-36245221:+|nuORF;ENST00000595455.1_1_19:36244761-36245372:+|nuORF;ENSG00000267796|ENST00000301159|LIN37 ENST00000590890.1_1_19:36244761-36245221:+|nuORF ENST00000590890.1_1_19:36244761-36245221:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 514.2615356445312 2 514.260068 1026.50558 NaN NaN NaN NaN NaN NaN NaN 54.879 1 49.013 48.513 49.513 -5.8653 0 0 0 0.0064238 1 34865 34865 100.37 63.905 1 24070 10869 16322 16637 28398 28398 1733 -0.006610119026390748 IPSPLRDLP 9 Unmodified _IPSPLRDLP_ 0 0 0 REV__nc|ENSG00000087206|Q96RL1-4|UIMC1 REV__nc|ENSG00000087206|Q96RL1-4|UIMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2973327636719 2 504.297842 1006.58113 0.36612 0.00018463 -0.43171 -0.00021771 -0.065591 -3.3078E-05 504.297464596901 59.863 0.38176 59.81 59.595 59.977 -0.053062 40 18 3 0 0 0 0.12424 1 32574 32574 30.637 0 1 5545800 + 24071 29518 16323 16638 28399 28399 0.0781033333993264 IPSPPPRPKN 10 Unmodified _IPSPPPRPKN_ 0 0 0 nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3;GGA3|p.L156M|1|0.17|ENSG00000125447|chr17:75243125-75243125|G/T|missense_variant nc|ENSG00000125447|Q9NZ52-3|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2178649902344 3 368.217102 1101.62948 0.40053 0.00014748 0.58292 0.00021464 0.98345 0.00036212 368.21734153068644 47.976 0.58314 47.937 47.62 48.203 -0.038643 95 28 4 0 0 0 0.6067 1 25946 25946 6.6235 0 1 108100000 24072 3851 16324 16639 28400 28400 0.08272826979850834 IPSPPPRPKN 10 Unmodified _IPSPPPRPKN_ 0 0 0 nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3;GGA3|p.L156M|1|0.17|ENSG00000125447|chr17:75243125-75243125|G/T|missense_variant nc|ENSG00000125447|Q9NZ52-3|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2177734375 3 368.217102 1101.62948 1.2185 0.00044868 0.046788 1.7228E-05 1.2653 0.00046591 368.21711215678823 53.193 0.51726 47.388 47.159 47.676 -5.8042 79 31 3 0 0 0 0.16361 2 33500 33500;33768 27.088 4.3134 1 144620000 24073 3851 16324 16639 28401;28402 28401 0.08272826979850834 IPSPPPRPKN 10 Unmodified _IPSPPPRPKN_ 0 0 0 nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3;GGA3|p.L156M|1|0.17|ENSG00000125447|chr17:75243125-75243125|G/T|missense_variant nc|ENSG00000125447|Q9NZ52-3|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2178344726562 3 368.217102 1101.62948 1.4522 0.00053471 0.30769 0.0001133 1.7599 0.00064801 368.2172192337012 63.349 0.66714 57.173 56.896 57.564 -6.1757 61 37 2 0 0 0 0.42143 1 41076 41076 13.519 0 1 17131000 24074 3851 16324 16639 28403 28403 0.08272826979850834 IPSPSHLQL 9 Unmodified _IPSPSHLQL_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.561767578125 1 991.557107 990.549831 1.441 0.0014289 -1.5641 -0.0015509 -0.1231 -0.00012206 991.5539701894326 100.94 0.18741 94.767 94.701 94.889 -6.1757 14 10 2 0 0 0 0.07087 1 67681 67681 39.95 7.164 1 28467000 24075 8543 16325 16640 28404 28404 0.054177603058633395 IPSPSLVSL 9 Unmodified _IPSPSLVSL_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;ENST00000437296.1_1_3:172536577-172538024:+|nuORF nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.5411376953125 1 912.54006 911.532783 0.35854 0.00032718 0.30205 0.00027563 0.66059 0.00060281 912.5410972680829 74.837 0.24681 74.361 74.207 74.454 -0.47588 12 9 2 0 0 0 0.019303 1 40936 40936 64.236 6.765 1 946020 24076 3031 16326 16641 28405 28405 0.07347839700048553 IPSPVLVKL 9 Unmodified _IPSPVLVKL_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.3242492675781 2 483.323328 964.632104 0.48347 0.00023367 1.119 0.00054084 1.6025 0.00077452 483.323841519815 67.925 0.28937 67.95 67.775 68.064 0.025146 41 13 4 0 0 0 0.0090524 2 37263 37263;37365 85.642 7.4921 1 13005000 24077 10689 16327 16642 28406;28407 28406 0.1483728238479216 IPSQFTRVM 9 Oxidation (M) _IPSQFTRVM(Oxidation (M))_ IPSQFTRVM(1) IPSQFTRVM(63) 0 0 1 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7862548828125 2 547.786784 1093.55902 -0.24908 -0.00013644 0.82712 0.00045309 0.57804 0.00031665 547.7872133267815 36.608 0.29916 36.63 36.559 36.858 0.021545 25 13 2 0 0 0 0.020973 1 19409 19409 62.573 30.267 1 3667500 24078 8814 16328 16643 28408 28408 1488 0.015977855998698942 IPSQLNVNF 9 Unmodified _IPSQLNVNF_ 0 0 0 nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT nc|ENSG00000005469|Q9UKG9-3|CROT nc|ENSG00000005469|Q9UKG9-3|CROT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2811279296875 2 516.279649 1030.54475 0.15102 7.7969E-05 -1.56 -0.00080541 -1.409 -0.00072744 516.2800687134713 66.699 0.30958 66.216 66.005 66.314 -0.48323 20 14 2 0 0 0 0.30202 1 36406 36406 17.113 2.5312 1 1554100 24079 309 16329 16644 28409 28409 0.030694564432451443 IPSRFLERQTY 11 Unmodified _IPSRFLERQTY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.5882568359375 3 470.589376 1408.7463 0.0765 3.6E-05 -0.083669 -3.9374E-05 -0.007169 -3.3736E-06 470.58918738386484 38.782 0.18176 38.794 38.698 38.88 0.011452 20 8 3 0 0 0 0.61596 1 20632 20632 10.527 0.9835 1 4797500 24080 16188 16330 16645 28410 28410 0.05827520408956843 IPSRTSAIL 9 Unmodified _IPSRTSAIL_ 0 0 0 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2906799316406 2 479.290017 956.565481 1.3768 0.00065988 -0.2409 -0.00011546 1.1359 0.00054442 479.289816034441 46.73 0.24164 46.696 46.572 46.814 -0.033421 28 11 3 0 0 0 0.085319 1 25128 25128 36.506 1.5741 1 4384900 + 24081 29971 16331 16646 28411 28411 0.0854604682289164 IPSSFKLGF 9 Unmodified _IPSSFKLGF_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2822875976562 2 498.28166 994.548768 NaN NaN NaN NaN NaN NaN NaN 68.213 1 68.238 67.738 68.738 0.025146 0 0 0 0.065563 1 37470 37470 52.268 6.2474 1 24082 4094 16332 16647 28412 28412 0.051275459369549026 IPSSFKLGF 9 Unmodified _IPSSFKLGF_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7848205566406 2 498.28166 994.548768 2.1265 0.0010596 -0.082807 -4.1261E-05 2.0437 0.0010183 498.2818025060593 94.792 0.46037 94.806 94.492 94.952 0.014244 36 17 3 0 0 0 0.18118 1 52564 52564 18.135 6.4947 1 6686500 24083 4094 16332 16647 28413 28413 0.051275459369549026 IPSSITSIL 9 Unmodified _IPSSITSIL_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5494995117188 1 930.550625 929.543348 0.70644 0.00065738 1.0709 0.00099652 1.7773 0.0016539 930.5510936489761 81.39 0.20439 80.898 80.792 80.997 -0.49248 12 8 2 0 0 0 0.026094 1 44561 44561 57.471 13.064 1 344560 24084 10814 16333 16648 28414 28414 0.07575822354476713 IPSSSLGCITY 11 Unmodified _IPSSSLGCITY_ 0 0 0 ENST00000361906.7_1_22:38615520-38615748:-|nuORF ENST00000361906.7_1_22:38615520-38615748:-|nuORF ENST00000361906.7_1_22:38615520-38615748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8585815429688 3 380.858363 1139.55326 -0.51776 -0.00019719 0.45289 0.00017249 -0.064866 -2.4705E-05 380.8585387701624 18.998 0.1287 18.998 18.931 19.06 0 18 12 2 0 0 0 0.6889 1 9471 9471 2.4348 0 1 995750 24085 12195 16334 16649 28415 28415 -0.010933577024388796 IPSSVIHPAM 10 Oxidation (M) _IPSSVIHPAM(Oxidation (M))_ IPSSVIHPAM(1) IPSSVIHPAM(89) 0 0 1 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2804565429688 2 534.281334 1066.54812 -0.3157 -0.00016868 -0.43652 -0.00023322 -0.75222 -0.0004019 534.2809517224091 34.542 0.31467 34.35 34.226 34.541 -0.19131 33 14 3 0 0 0 0.0090453 1 18045 18045 89.427 60.345 1 5474800 24086 3096 16335 16650 28416 28416 541 0.017503832255670204 IPSSVPATF 9 Unmodified _IPSSVPATF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.4965209960938 1 918.49311 917.485833 0.089727 8.2413E-05 1.1248 0.0010331 1.2145 0.0011155 918.4943202632717 53.086 0.30544 52.634 52.457 52.762 -0.45173 22 15 2 0 0 0 0.00856 1 28678 28678 100.37 42.9 1 1297600 24087 329 16336 16651 28417 28417 0.023789801488987905 IPSSVPATF 9 Unmodified _IPSSVPATF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.4935302734375 1 918.49311 917.485833 -0.25675 -0.00023582 1.377 0.0012647 1.1202 0.0010289 918.4941078410843 56.906 0.37798 56.42 56.205 56.583 -0.48554 45 17 3 0 0 0 1.0251E-06 2 30946 30838;30946 162.95 84.967 1 12577000 24088 329 16336 16651 28418;28419 28419 0.023789801488987905 IPSSVPATF 9 Unmodified _IPSSVPATF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.750244140625 2 459.750193 917.485833 -0.11523 -5.2975E-05 0.97947 0.00045031 0.86425 0.00039734 459.75054072061874 56.901 0.43954 56.415 56.186 56.626 -0.48554 53 20 4 0 0 0 0.013472 2 30963 30857;30963 70.716 26.309 1 10321000 24089 329 16336 16651 28420;28421 28421 0.023789801488987905 IPSSVPATF 9 Unmodified _IPSSVPATF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.4940185546875 1 918.49311 917.485833 1.1931 0.0010959 0.10988 0.00010093 1.303 0.0011968 918.4929674317054 64.258 0.54922 58.083 57.782 58.331 -6.1757 48 28 2 0 0 0 2.6046E-06 3 41560 41436;41560;41698 156.16 70.799 1 47170000 24090 329 16336 16651 28422;28423;28424 28423 0.023789801488987905 IPSSVPATF 9 Unmodified _IPSSVPATF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000441188.2_1_X:92477682-92478501:-|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7518615722656 2 459.750193 917.485833 1.4666 0.00067426 0.8133 0.00037391 2.2799 0.0010482 459.75047538180127 64.226 0.52856 58.05 57.802 58.331 -6.1757 70 27 3 0 0 0 0.010877 2 41511 41511;41648 77.984 39.833 1 67364000 24091 329 16336 16651 28425;28426 28425 0.023789801488987905 IPSSVPKHYI 10 Unmodified _IPSSVPKHYI_ 0 0 0 ENST00000393800.6_2_11:68381975-68382077:+|nuORF ENST00000393800.6_2_11:68381975-68382077:+|nuORF ENST00000393800.6_2_11:68381975-68382077:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8273315429688 2 570.824224 1139.63389 3.4775 0.001985 2.9607 0.0016901 6.4382 0.0036751 570.8256006145034 99.524 0.12658 99.487 99.427 99.554 -0.036301 7 4 2 0 0 0 0.6606 1 55301 55301 7.2892 0 1 1265000 24092 12718 16337 16652 28427 28427 0.06966291402773095 IPSTFLRTI 9 Unmodified _IPSTFLRTI_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3141479492188 2 524.313492 1046.61243 0.13632 7.1472E-05 0.23697 0.00012425 0.37328 0.00019572 524.3135877953903 56.558 0.23892 56.489 56.36 56.598 -0.068737 14 11 2 0 0 0 0.34999 1 30808 30808 14.838 0 1 3886300 + 24093 23192 16338 16653 28428 28428 0.09098906374060789 IPSTQVVYF 9 Unmodified _IPSTQVVYF_ 0 0 0 ENST00000466698.1_1_1:156130343-156131310:+|nuORF;nc|ENSG00000196189|Q9H3S1-2|SEMA4A;ENSG00000196189|ENST00000368285|SEMA4A ENST00000466698.1_1_1:156130343-156131310:+|nuORF ENST00000466698.1_1_1:156130343-156131310:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2848510742188 2 527.2844 1052.55425 0.34556 0.00018221 0.9336 0.00049227 1.2792 0.00067448 527.2847609878442 78.543 0.38309 78.595 78.394 78.777 0.052452 41 15 3 0 0 0 0.14602 1 43433 43433 28.487 5.7506 1 14593000 24094 9776 16339 16654 28429 28429 0.030072247287534992 IPSTVDRCCL 10 Unmodified _IPSTVDRCCL_ 0 0 0 REV__ENST00000588513.1_2_16:4749124-4755150:-|nuORF REV__ENST00000588513.1_2_16:4749124-4755150:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.5162658691406 3 369.515943 1105.526 0.19616 7.2484E-05 0.41048 0.00015168 0.60664 0.00022416 369.5162164949949 45.749 0.21365 45.749 45.625 45.838 0 15 10 2 0 0 0 0.65773 1 24972 24972 7.0371 2.5082 1 4091600 + 24095 22290 16340 16655 28430 28430 -0.02254164514488366 IPSVCRPQF 9 Unmodified _IPSVCRPQF_ 0 0 0 REV__nc|ENSG00000138347|Q86TC9-2|MYPN REV__nc|ENSG00000138347|Q86TC9-2|MYPN MSMS AL20221201_MKP_PDAC_01 4 523.7769775390625 2 523.776219 1045.53789 NaN NaN NaN NaN NaN NaN NaN 96.243 1 90.067 89.567 90.567 -6.1757 0 0 0 0.23581 1 63775 63775 28.487 1.6032 1 + 24096 20323 16341 16656 28431 28431 0.016938202910068867 IPSVIYEHM 9 Oxidation (M) _IPSVIYEHM(Oxidation (M))_ IPSVIYEHM(1) IPSVIYEHM(100) 0 0 1 ENSG00000125775|ENST00000360779|SDCBP2;nc|ENSG00000125775|Q9H190-3|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7731323242188 2 552.773342 1103.53213 0.29373 0.00016236 -0.32342 -0.00017878 -0.029695 -1.6415E-05 552.7730467351339 43.013 0.32088 42.702 42.587 42.908 -0.31039 26 14 2 0 0 0 0.0088975 1 22882 22882 104.8 64.849 1 5161100 24097 3881 16342 16657 28432 28432 694 -0.015493230113406753 IPSYMRCHY 9 Unmodified _IPSYMRCHY_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2650756835938 2 585.265161 1168.51577 0.25173 0.00014733 -0.88916 -0.0005204 -0.63743 -0.00037307 585.2649425308804 66.397 0.42349 66.397 66.153 66.576 0 48 18 4 0 0 0 0.53666 1 36972 36972 5.2307 0.90143 1 2818200 + 24098 24460 16343 16658 28433 28433 -0.061747274490699056 IPTANKEACY 10 Unmodified _IPTANKEACY_ 0 0 0 REV__GPR15|p.K187N|1|0.06|ENSG00000154165|chr3:98532594-98532594|G/C|missense_variant REV__GPR15|p.K187N|1|0.06|ENSG00000154165|chr3:98532594-98532594|G/C|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.0384216308594 3 370.514708 1108.5223 0.83635 0.00030988 -0.95406 -0.00035349 -0.11771 -4.3613E-05 370.84740517784144 24.315 0.28025 21.488 21.265 21.545 -2.8273 24 15 2 0 0 0 0.23896 1 13260 13260 0.12286 0 1 4288100 + 24099 29354 16344 16659 28434 28434 -0.027625110167036837 IPTDCMPSAL 10 Unmodified _IPTDCMPSAL_ 0 0 0 ENST00000557041.1_1_14:20928323-20928407:-|nuORF ENST00000557041.1_1_14:20928323-20928407:-|nuORF ENST00000557041.1_1_14:20928323-20928407:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.24609375 2 524.246103 1046.47765 0.87247 0.00045739 -1.3361 -0.00070045 -0.46364 -0.00024306 524.245580090681 53.845 0.46778 53.845 53.705 54.173 0 52 21 4 0 0 0 0.24625 1 29856 29856 30.637 0.41173 1 8018300 24100 15251 16345 16660 28435 28435 -0.04372658154397868 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7741394042969 2 493.773865 985.533177 0.15158 7.4844E-05 0.55663 0.00027485 0.7082 0.00034969 493.77409744901996 80.659 0.50258 80.659 80.408 80.911 0 73 23 4 0 0 0 0.0090851 2 44801 44708;44801 85.357 27.885 1 27796000 24101 2482 16346 16661 28436;28437 28437 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.5406494140625 1 986.540454 985.533177 0.037993 3.7482E-05 0.40448 0.00039904 0.44248 0.00043652 986.5407124340772 80.662 0.43327 80.662 80.452 80.885 0 63 20 4 0 0 0 1.0251E-06 2 44812 44715;44812 162.95 29.249 1 17895000 24102 2482 16346 16661 28438;28439 28439 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7739868164062 2 493.773865 985.533177 0.97768 0.00048275 -0.68005 -0.00033579 0.29763 0.00014696 493.7733852420073 81.188 0.43983 80.695 80.513 80.953 -0.49247 61 26 3 0 0 0 0.019303 2 44510 44410;44510 64.236 15.89 1 10047000 24103 2482 16346 16661 28440;28441 28441 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.5426025390625 1 986.540454 985.533177 0.68857 0.0006793 -1.4923 -0.0014723 -0.80378 -0.00079296 986.5391778697684 81.186 0.29774 80.693 80.539 80.837 -0.49247 47 20 3 0 0 0 0.0018186 2 44414 44414;44520 133.7 28.903 1 6954800 24104 2482 16346 16661 28442;28443 28442 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.5414428710938 1 986.540454 985.533177 1.1113 0.0010963 0.18508 0.00018259 1.2964 0.0012789 986.5406347048796 88.983 0.59644 82.807 82.531 83.127 -6.1757 75 33 3 0 0 0 2.6046E-06 3 58697 58577;58697;58830 156.16 30.531 1 58628000 24105 2482 16346 16661 28444;28445;28446 28445 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7745971679688 2 493.773865 985.533177 1.1315 0.00055871 0.3282 0.00016206 1.4597 0.00072077 493.77397079786545 88.969 0.72337 82.793 82.459 83.182 -6.1757 110 40 4 0 0 0 0.008678 3 58833 58584;58710;58833 88.904 27.885 1 151450000 24106 2482 16346 16661 28447;28448;28449 28449 0.039832146292383186 IPTDIISDL 9 Unmodified _IPTDIISDL_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI;ENST00000379868.5_1_9:32491415-32526182:-|nuORF ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 493.773865 985.533177 0.63698 0.00031453 -0.63368 -0.00031289 0.0033061 1.6325E-06 493.77343534550795 80.617 0.19936 80.675 80.563 80.762 0.057587 -0.0016066 -0.00056883 NaN 85.357 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2274000 24107 2482 16346 16661 0.039832146292383186 IPTEEERRVF 10 Unmodified _IPTEEERRVF_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;ENSG00000109180|ENST00000264312|OCIAD1;ENST00000507546.5_1_4:48833247-48850510:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.8938598632812 3 425.894577 1274.6619 -1.1267 -0.00047984 0.73783 0.00031424 -0.38884 -0.00016561 425.89490916373876 32.62 0.32976 32.62 32.481 32.811 0 52 17 4 0 0 0 0.061642 2 17017 17017;17120 55.249 21.027 1 16308000 24108 2637 16347 16662 28450;28451 28450 0.035555695921630104 IPTEEERRVF 10 Unmodified _IPTEEERRVF_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;ENSG00000109180|ENST00000264312|OCIAD1;ENST00000507546.5_1_4:48833247-48850510:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.3370361328125 2 638.338227 1274.6619 NaN NaN NaN NaN NaN NaN NaN 32.646 1 32.646 32.146 33.146 0 0 0 0 0.69089 1 17072 17072 14.405 7.6822 1 24109 2637 16347 16662 28452 28452 0.035555695921630104 IPTEEERRVF 10 Unmodified _IPTEEERRVF_ 0 0 0 ENST00000512981.5_1_4:48833247-48854006:+|nuORF;nc|ENSG00000109180|Q9NX40-3|OCIAD1;nc|ENSG00000109180|Q9NX40-2|OCIAD1;nc|ENSG00000109180|Q9NX40-4|OCIAD1;ENSG00000109180|ENST00000264312|OCIAD1;ENST00000507546.5_1_4:48833247-48850510:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF ENST00000512981.5_1_4:48833247-48854006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8948974609375 3 425.894577 1274.6619 1.2671 0.00053964 -0.07889 -3.3599E-05 1.1882 0.00050604 425.8945264529531 36.963 0.43605 32.68 32.455 32.891 -4.2835 78 26 4 0 0 0 0.20771 2 21592 21592;21725 32.898 13.272 1 31918000 24110 2637 16347 16662 28453;28454 28453 0.035555695921630104 IPTELQQLW 9 Unmodified _IPTELQQLW_ 0 0 0 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3080444335938 2 564.308406 1126.60226 NaN NaN NaN NaN NaN NaN NaN 85.254 1 84.752 84.252 85.252 -0.5015 0 0 0 0.7818 1 46647 46647 6.7232 1.4925 1 24111 16620 16348 16663 28455 28455 0.04402298648801661 IPTEQVNEL 9 Unmodified _IPTEQVNEL_ 0 0 0 ENST00000551305.5_1_12:48358091-48359129:+|nuORF;nc|ENSG00000134291|Q9BVX2-2|TMEM106C;ENSG00000134291|ENST00000429772|TMEM106C ENST00000551305.5_1_12:48358091-48359129:+|nuORF ENST00000551305.5_1_12:48358091-48359129:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7749633789062 2 521.774396 1041.53424 0.76332 0.00039828 -0.41662 -0.00021738 0.3467 0.0001809 521.7741542075689 45.912 0.44612 45.912 45.685 46.131 0 51 21 4 0 0 0 0.06294 2 25008 25008;25124 41.84 12.758 1 22562000 24112 4586 16349 16664 28456;28457 28456 0.015134289981460824 IPTETAALY 9 Unmodified _IPTETAALY_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.5137329101562 1 978.514239 977.506963 0.45955 0.00044968 -0.62967 -0.00061614 -0.17012 -0.00016646 978.5138289985795 50.873 0.15632 50.873 50.821 50.978 0 13 8 2 0 0 0 0.0086179 1 28076 28076 89.427 18.711 1 1847000 24113 2100 16350 16665 28458 28458 0.017309454577457473 IPTFESLTF 9 Unmodified _IPTFESLTF_ 0 0 0 ENSG00000125430|ENST00000360954|HS3ST3B1;ENSG00000153976|ENST00000284110|HS3ST3A1 ENSG00000125430|ENST00000360954|HS3ST3B1 ENSG00000125430|ENST00000360954|HS3ST3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7770385742188 2 527.776408 1053.53826 1.0584 0.00055862 1.1751 0.00062021 2.2336 0.0011788 527.7765256385544 92.086 0.83553 85.911 85.596 86.431 -6.1757 105 49 3 0 0 0 0.1685 1 61200 61200 36.044 7.5574 1 66301000 24114 3848 16351 16666 28459 28459 0.013635184918257437 IPTGHPQSLR 10 Unmodified _IPTGHPQSLR_ 0 0 0 REV__ENST00000580005.1_1_17:56357276-56358041:-|nuORF REV__ENST00000580005.1_1_17:56357276-56358041:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2083740234375 3 369.208607 1104.60399 0.53062 0.00019591 0.9524 0.00035163 1.483 0.00054754 369.20906671308853 25.357 0.3223 22.474 22.322 22.644 -2.8831 31 17 2 0 0 0 0.57893 1 13838 13838 7.4771 0 1 7520200 + 24115 29055 16352 16667 28460 28460 0.055873524574280964 IPTHHPRVY 9 Unmodified _IPTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8736572265625 3 373.873447 1118.59851 -0.56127 -0.00020984 0.37747 0.00014113 -0.1838 -6.8718E-05 373.87365364284926 17.629 0.14713 17.643 17.571 17.718 0.013866 100 31 4 0 0 0 0.40615 1 8759 8759 12.175 5.4516 1 13870000 24116 7233 16353 16668 28461 28461 0.04395673665612776 IPTHHPRVY 9 Unmodified _IPTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8740234375 3 373.873447 1118.59851 1.4193 0.00053064 -0.65705 -0.00024565 0.76225 0.00028499 373.8733236792425 19.039 0.42961 16.418 16.205 16.634 -2.6215 90 27 5 0 0 0 0.40615 1 9972 9972 12.175 3.1985 1 71209000 24117 7233 16353 16668 28462 28462 0.04395673665612776 IPTHHPRVY 9 Unmodified _IPTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3063354492188 2 560.306532 1118.59851 1.0709 0.00060002 -0.45246 -0.00025352 0.61842 0.00034651 560.3062795257283 19.038 0.22953 16.417 16.277 16.506 -2.6215 25 14 3 0 0 0 0.053952 1 10021 10021 47.749 42.017 1 2817000 24118 7233 16353 16668 28463 28463 0.04395673665612776 IPTIMQYW 8 Unmodified _IPTIMQYW_ 0 0 0 ENST00000259253.10_1_2:128861567-128867211:+|nuORF ENST00000259253.10_1_2:128861567-128867211:+|nuORF ENST00000259253.10_1_2:128861567-128867211:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2651977539062 2 526.267696 1050.52084 0.38876 0.00020459 -1.4959 -0.00078726 -1.1072 -0.00058267 526.2669020447622 62.459 0.3509 62.459 62.304 62.655 0 39 22 2 0 0 0 0.48583 1 34801 34801 44.407 8.3628 1 18303000 24119 11212 16354 16669 28464 28464 -0.0024010031479519967 IPTKLELTF 9 Unmodified _IPTKLELTF_ 0 0 0 nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3155517578125 2 531.3157 1060.61685 0.31788 0.0001689 -0.11867 -6.3052E-05 0.19921 0.00010584 531.3153699614611 69.689 0.23411 69.72 69.592 69.826 0.030914 24 11 3 0 0 0 0.018061 1 38340 38340 65.474 0.23867 1 2876300 24120 1282 16355 16670 28465 28465 0.08896370796924202 IPTKQTQIF 9 Unmodified _IPTKQTQIF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3107299804688 2 538.310949 1074.60735 -0.24804 -0.00013352 -0.15356 -8.2664E-05 -0.4016 -0.00021619 538.3107951824525 42.141 0.4492 41.835 41.574 42.023 -0.30682 61 21 4 0 0 0 0.015688 2 22321 22321;22427 67.838 23.98 1 68528000 24121 10277 16356 16671 28466;28467 28466 0.0730260251141317 IPTKQTQIF 9 Unmodified _IPTKQTQIF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.311279296875 2 538.310949 1074.60735 0.33174 0.00017858 0.086618 4.6628E-05 0.41836 0.00022521 538.3110104804979 46.745 0.67311 41.664 41.359 42.033 -5.0805 258 108 3 0 0 0 0.012668 2 28895 28760;28895 72.968 26.947 1 273770000 24122 10277 16356 16671 28468;28469 28469 0.0730260251141317 IPTKQTQTF 9 Unmodified _IPTKQTQTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2926635742188 2 532.292756 1062.57096 -0.30717 -0.0001635 0.26573 0.00014144 -0.041441 -2.2059E-05 532.2928434054324 26.677 0.56411 26.677 26.428 26.992 0 100 26 5 0 0 0 0.011211 3 13626 13626;13731;13833 93.166 30.341 1 60743000 24123 2688;8286 16357 16672 28470;28471;28472 28470 0.042177256146942455 IPTKQTQTF 9 Unmodified _IPTKQTQTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.794921875 2 532.292756 1062.57096 0.34176 0.00018191 -0.1969 -0.00010481 0.14485 7.7105E-05 532.2925519554336 26.674 0.37314 26.643 26.45 26.823 -0.031706 54 21 3 0 0 0 0.0071813 2 13665 13665;13759 133.05 62.337 1 93401000 24124 2688;8286 16357 16672 28473;28474 28473 0.042177256146942455 IPTKQTQTF 9 Unmodified _IPTKQTQTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2933349609375 2 532.292756 1062.57096 0.2473 0.00013163 0.23289 0.00012396 0.48018 0.0002556 532.2926932419427 26.561 0.45451 26.588 26.301 26.755 0.026951 45 19 3 0 0 0 0.01085 2 13689 13689;13789 85.642 26.963 1 16680000 24125 2688;8286 16357 16672 28475;28476 28475 0.042177256146942455 IPTKQTQTF 9 Unmodified _IPTKQTQTF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000397642.3_1_1:247394123-247394771:+|nuORF;ENST00000552265.2_1_12:111822376-111823062:+|nuORF;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2926635742188 2 532.292756 1062.57096 0.64469 0.00034316 0.047569 2.5321E-05 0.69226 0.00036848 532.292718440408 30.124 0.6669 26.628 26.308 26.975 -3.497 113 32 4 0 0 0 0.0081563 4 16837 16837;16954;17072;17189 122.18 65.492 1 985710000 24126 2688;8286 16357 16672 28477;28478;28479;28480 28477 0.042177256146942455 IPTMAFITY 9 Oxidation (M) _IPTM(Oxidation (M))AFITY_ IPTM(1)AFITY IPTM(42)AFITY 0 0 1 ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7740478515625 2 536.772811 1071.53107 0.39211 0.00021047 0.84867 0.00045554 1.2408 0.00066602 536.773236788502 68.024 0.39348 68.049 67.775 68.168 0.025154 35 18 2 0 0 0 0.06187 1 37296 37296 42.095 33.501 1 5957700 24127 8465 16358 16673 28481 28481 1434 -0.0018353738021232857 IPTMAFITY 9 Unmodified _IPTMAFITY_ 0 0 0 ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7753295898438 2 528.775354 1055.53615 1.2112 0.00064046 2.0099 0.0010628 3.2211 0.0017033 528.7763924174355 96.199 0.686 90.024 89.584 90.27 -6.1757 72 41 2 0 0 0 0.05483 3 63629 63629;63752;63880 48.346 28.907 1 18334000 24128 8465 16358 16674 28482;28483;28484 28482 0.010607664823965024 IPTNDELLY 9 Unmodified _IPTNDELLY_ 0 0 0 ENSG00000129518|ENST00000250454|EAPP ENSG00000129518|ENST00000250454|EAPP ENSG00000129518|ENST00000250454|EAPP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2713623046875 2 539.276772 1076.53899 NaN NaN NaN NaN NaN NaN NaN 59.41 1 59.41 58.91 59.91 0 0 0 0 0.6557 1 33100 33100 10.824 0 1 24129 4146 16359 16675 28485 28485 0.003783131409136331 IPTNIKYEF 9 Unmodified _IPTNIKYEF_ 0 0 0 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8024291992188 2 562.802957 1123.59136 1.1891 0.00066921 0.083591 4.7045E-05 1.2727 0.00071626 562.8029054596668 60.397 0.41389 54.282 54.064 54.478 -6.1147 39 21 2 0 0 0 0.030212 1 38829 38829 55.235 1.4019 1 28898000 24130 9003 16360 16676 28486 28486 0.03450896274512161 IPTNIKYEF 9 Unmodified _IPTNIKYEF_ 0 0 0 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 562.802957 1123.59136 0.27652 0.00015563 -0.40073 -0.00022553 -0.12421 -6.9904E-05 562.8026027783937 54.768 0.3397 54.301 54.162 54.502 -0.46664 0.0095552 -0.00018461 NaN 55.235 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6743600 24131 9003 16360 16676 0.03450896274512161 IPTNVPELTF 10 Unmodified _IPTNVPELTF_ 0 0 0 nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1 nc|ENSG00000133895|O00255-3|MEN1 nc|ENSG00000133895|O00255-3|MEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8079223632812 2 565.808239 1129.60193 1.0253 0.0005801 -0.66088 -0.00037393 0.36438 0.00020617 565.8084297779787 80.72 0.39934 80.228 79.981 80.38 -0.49247 28 16 2 0 0 0 0.6865 1 44161 44161 7.609 5.3062 1 735050 24132 4541 16361 16677 28487 28487 0.042308789289336346 IPTPPENITF 10 Unmodified _IPTPPENITF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.80029296875 2 564.800414 1127.58628 0.67647 0.00038207 0.71531 0.00040401 1.3918 0.00078608 564.8006417546808 71.514 0.47595 71.037 70.816 71.292 -0.47736 46 19 3 0 0 0 0.27276 2 39185 39081;39185 29.082 7.5446 1 1576800 24133 6277 16362 16678 28488;28489 28489 0.027585924118739058 IPTPPENITF 10 Unmodified _IPTPPENITF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7987670898438 2 564.800414 1127.58628 0.97068 0.00054824 -0.93311 -0.00052702 0.037571 2.122E-05 564.8003103209844 79.003 0.49173 72.827 72.564 73.056 -6.1757 52 27 3 0 0 0 0.16361 1 51650 51650 38.176 6.9072 1 12007000 24134 6277 16362 16678 28490 28490 0.027585924118739058 IPTPPENITF 10 Unmodified _IPTPPENITF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 564.800414 1127.58628 0.8374 0.00047296 -1.0271 -0.0005801 -0.18969 -0.00010714 564.8002024819315 72.993 0.11189 72.517 72.429 72.541 -0.47588 -0.15503 -7.7658E-05 NaN 38.176 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 218760 24135 6277 16362 16678 0.027585924118739058 IPTPPLPSY 9 Unmodified _IPTPPLPSY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7735290527344 2 492.773668 983.532783 0.55288 0.00027245 0.35986 0.00017733 0.91275 0.00044978 492.77343802741814 67.142 0.58355 66.66 66.356 66.939 -0.48219 95 26 6 0 0 0 0.0048787 2 36671 36566;36671 117.6 43.176 1 11326000 24136 3712 16363 16679 28491;28492 28492 0.04035839700031829 IPTPPLPSY 9 Unmodified _IPTPPLPSY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.7741088867188 2 492.773668 983.532783 1.1471 0.00056524 -1.1424 -0.00056297 0.0046142 2.2738E-06 492.7729781290486 66.625 0.44916 66.635 66.38 66.829 0.0095596 39 21 2 0 0 0 0.0021514 1 36517 36517 131.3 45.941 1 7072400 24137 3712 16363 16679 28493 28493 0.04035839700031829 IPTPPLPSY 9 Unmodified _IPTPPLPSY_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7738342285156 2 492.773668 983.532783 0.93088 0.00045871 0.45615 0.00022478 1.387 0.00068349 492.7735405787099 74.093 0.57323 67.918 67.64 68.213 -6.1757 79 28 5 0 0 0 0.0021514 3 48535 48308;48421;48535 131.3 56.875 1 60271000 24138 3712 16363 16679 28494;28495;28496 28496 0.04035839700031829 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.8010864257812 2 531.800749 1061.58694 0.56657 0.0003013 -1.0726 -0.00057042 -0.50606 -0.00026912 531.8001692846154 36.187 0.29853 36.187 36.032 36.33 0 51 14 5 0 0 0 0.0087224 2 19130 19130;19234 107.1 41.865 1 231000000 24139 10212 16364 16680 28497;28498 28497 0.058614318515992636 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8015747070312 2 531.800749 1061.58694 -0.52785 -0.00028071 -0.60746 -0.00032305 -1.1353 -0.00060376 531.8002925447474 36.453 0.42619 36.204 35.979 36.405 -0.2497 83 19 6 0 0 0 0.0048194 2 19058 19058;19162 117.76 52.526 1 1334800000 24140 10212 16364 16680 28499;28500 28499 0.058614318515992636 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8001708984375 2 531.800749 1061.58694 -0.15872 -8.4408E-05 0.01101 5.855E-06 -0.14771 -7.8553E-05 531.8006974237223 36.134 0.38264 36.159 35.969 36.352 0.024967 61 16 5 0 0 0 0.0048194 2 19072 19072;19182 117.76 46.627 1 327950000 24141 10212 16364 16680 28501;28502 28501 0.058614318515992636 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8006591796875 2 531.800749 1061.58694 0.23613 0.00012557 -1.2363 -0.00065748 -1.0002 -0.00053191 531.7997544235321 41.456 0.84842 36.848 36.528 37.377 -4.6079 199 54 6 0 0 0 0.0088668 4 24708 24708;24848;24984;25114 87.258 43.4 1 5389800000 24142 10212 16364 16680 28503;28504;28505;28506 28503 0.058614318515992636 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8013305664062 2 531.800749 1061.58694 0.99187 0.00052748 0.8585 0.00045655 1.8504 0.00098403 531.8012487772381 42.01 0.53539 37.326 37.097 37.632 -4.6846 64 33 2 0 0 0 0.0025703 1 25307 25307 128.93 60.852 1 254480000 24143 10212 16364 16680 28507 28507 0.058614318515992636 IPTRVVTNY 9 Unmodified _IPTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.800749 1061.58694 -0.43289 -0.00023021 0.026448 1.4065E-05 -0.40644 -0.00021614 531.800656226372 36.74 0.19897 36.491 36.405 36.604 -0.2497 -0.1237 0.00080428 NaN 87.258 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 7050100 24144 10212 16364 16680 0.058614318515992636 IPTSARSML 9 Unmodified _IPTSARSML_ 0 0 0 ENSG00000143614|ENST00000368655|GATAD2B ENSG00000143614|ENST00000368655|GATAD2B ENSG00000143614|ENST00000368655|GATAD2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2682495117188 2 488.268227 974.521901 0.47047 0.00022972 -1.0882 -0.00053133 -0.61773 -0.00030162 488.2677308706639 45.039 0.49075 40.187 39.975 40.466 -4.852 76 32 3 0 0 0 0.085319 2 27626 27484;27626 36.506 2.3189 1 67053000 24145 5534 16365 16681 28508;28509 28509 0.03362114054118592 IPTSGSFF 8 Unmodified _IPTSGSFF_ 0 0 0 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 855.4255981445312 1 855.424696 854.417419 -0.11975 -0.00010243 0.30047 0.00025703 0.18073 0.0001546 855.4250398625906 91.927 0.36311 91.446 91.269 91.632 -0.48092 38 20 2 0 0 0 0.44122 1 50291 50291 40.449 8.3316 1 2238600 + 24146 29477 16366 16682 28510 28510 -0.015612644309499046 IPTSGSFF 8 Unmodified _IPTSGSFF_ 0 0 0 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 855.4287719726562 1 855.424696 854.417419 0.13388 0.00011453 -0.12531 -0.0001072 0.0085677 7.329E-06 855.4249374763014 99.833 0.16687 93.658 93.574 93.74 -6.1757 23 12 2 0 0 0 0.5284 1 66557 66557 32.117 3.9437 1 82421000 + 24147 29477 16366 16682 28511 28511 -0.015612644309499046 IPTSGSFF 8 Unmodified _IPTSGSFF_ 0 0 0 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 REV__nc|ENSG00000000457|Q8IZE3|SCYL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 855.424696 854.417419 -0.11975 -0.00010243 0.30047 0.00025703 0.18073 0.0001546 855.4250398625906 91.927 0.36311 91.446 91.269 91.632 -0.48092 0 0 NaN 40.449 38 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2238600 + 24148 29477 16366 16682 -0.015612644309499046 IPTSTGIPY 9 Unmodified _IPTSTGIPY_ 0 0 0 nc|ENSG00000103449|Q9NSC2-2|SALL1;ENSG00000103449|ENST00000251020|SALL1 nc|ENSG00000103449|Q9NSC2-2|SALL1 nc|ENSG00000103449|Q9NSC2-2|SALL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5042114257812 1 948.503674 947.496398 0.16552 0.000157 -1.1134 -0.0010561 -0.94788 -0.00089907 948.5023116676812 67.849 0.40974 61.673 61.531 61.94 -6.1757 37 23 2 0 0 0 0.016184 1 44318 44318 67.344 6.9543 1 16538000 24149 2140 16367 16683 28512 28512 0.020549628033336376 IPTTCEQVQ 9 Unmodified _IPTTCEQVQ_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7472229003906 2 509.747324 1017.4801 0.18577 9.4693E-05 0.33527 0.00017091 0.52104 0.0002656 509.7475939008678 91.907 0.38623 91.426 91.269 91.655 -0.48092 58 21 3 0 0 0 0.30562 1 50197 50197 16.942 2.104 1 2885000 24150 6907 16368 16684 28513 28513 -0.027944864250684986 IPTVEESYEC 10 Unmodified _IPTVEESYEC_ 0 0 0 REV__ENSG00000205339|ENST00000379719|IPO7 REV__ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2546997070312 2 585.255179 1168.49581 -0.30461 -0.00017828 -0.80444 -0.0004708 -1.1091 -0.00064908 585.2550310229998 23.708 0.52668 23.708 23.489 24.016 0 75 26 4 0 0 0 0.50944 1 12114 12114 15.847 5.0233 1 4607700 + 24151 24223 16369 16685 28514 28514 -0.08170244698681017 IPTWRNVLCMY 11 Unmodified _IPTWRNVLCMY_ 0 0 0 ENST00000513546.3_1_4:89199269-89199383:-|nuORF ENST00000513546.3_1_4:89199269-89199383:-|nuORF ENST00000513546.3_1_4:89199269-89199383:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2343444824219 3 465.901909 1394.6839 0.38775 0.00018065 -1.5967 -0.0007439 -1.2089 -0.00056324 466.23493180827 57.352 0.54943 56.862 56.474 57.024 -0.48974 47 25 3 0 0 0 0.70701 1 31132 31132 1.4551 0.12547 1 4704100 24152 14640 16370 16686 28515 28515 0.002343347447549604 IPVAIFITL 9 Unmodified _IPVAIFITL_ 0 0 0 ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.631591796875 1 986.628481 985.621205 0.70304 0.00069364 0.23717 0.000234 0.94021 0.00092764 986.6288639625539 101.92 0.079987 95.744 95.7 95.78 -6.1757 6 3 2 0 0 0 0.012158 1 68414 68414 74.396 7.0524 1 4661500 24153 4830 16371 16687 28516 28516 0.12781880010504665 IPVAIFITL 9 Unmodified _IPVAIFITL_ 0 0 0 ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.8187866210938 2 493.817879 985.621205 0.71975 0.00035543 -1.0054 -0.0004965 -0.28567 -0.00014107 493.81755118506265 101.92 0.079987 95.744 95.7 95.78 -6.1757 5 3 2 0 0 0 0.16776 1 68433 68433 26.341 6.9023 1 4232000 24154 4830 16371 16687 28517 28517 0.12781880010504665 IPVAIRTQI 9 Unmodified _IPVAIRTQI_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.8226013183594 2 505.821484 1009.62842 0.78062 0.00039486 -0.049309 -2.4942E-05 0.73131 0.00036991 505.8215239193547 63.119 0.91068 56.944 56.653 57.564 -6.1757 129 49 3 0 0 0 0.0082485 1 41108 41108 96.285 0.17383 1 231560000 24155 3067 16372 16688 28518 28518 0.12398612610945747 IPVALLIHY 9 Unmodified _IPVALLIHY_ 0 0 0 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8214721679688 2 519.820953 1037.62735 0.35665 0.00018539 0.14663 7.6221E-05 0.50328 0.00026161 519.8210067458597 78.539 0.334 78.592 78.394 78.728 0.052452 35 13 3 0 0 0 0.016115 1 43344 43344 67.413 11.365 1 9833600 24156 331 16373 16689 28519 28519 0.11004398242039315 IPVALLIHY 9 Unmodified _IPVALLIHY_ 0 0 0 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 ENSG00000006210|ENST00000006053|CX3CL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8217163085938 2 519.820953 1037.62735 1.1578 0.00060185 -0.39019 -0.00020283 0.76761 0.00039902 519.8207212434907 94.696 0.52054 88.521 88.266 88.787 -6.1757 57 29 3 0 0 0 0.01018 2 62634 62634;62758 79.935 34.185 1 17086000 24157 331 16373 16689 28520;28521 28520 0.11004398242039315 IPVATAAALL 10 Unmodified _IPVATAAALL_ 0 0 0 nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8 nc|ENSG00000099904|Q9ULC8-2|ZDHHC8 nc|ENSG00000099904|Q9ULC8-2|ZDHHC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2981567382812 2 470.29731 938.580068 0.65501 0.00030805 -0.17821 -8.3813E-05 0.4768 0.00022424 470.29719129970255 63.155 0.29946 56.98 56.857 57.156 -6.1757 24 16 2 0 0 0 0.02987 1 40818 40818 68.081 0.24254 1 9104100 24158 1718 16374 16690 28522 28522 0.10832118971029558 IPVCDHWSGP 10 Unmodified _IPVCDHWSGP_ 0 0 0 ENST00000335025.12_1_22:22051218-22051356:+|nuORF ENST00000335025.12_1_22:22051218-22051356:+|nuORF ENST00000335025.12_1_22:22051218-22051356:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7544555664062 2 555.755484 1109.49641 NaN NaN NaN NaN NaN NaN NaN 21.635 1 21.635 21.135 22.135 0 0 0 0 0.99091 1 10961 10961 1.6526 0.45928 1 24159 11891 16375 16691 28523 28523 -0.05395360468310173 IPVDAKVGY 9 Unmodified _IPVDAKVGY_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2713012695312 2 481.271293 960.528032 0.22214 0.00010691 0.57843 0.00027838 0.80056 0.00038529 481.2715966088922 37.675 0.3357 37.675 37.51 37.846 0 41 16 3 0 0 0 0.03568 2 20029 20029;20144 52.268 8.4101 1 13205000 24160 1796 16376 16692 28524;28525 28524 0.04618955557282334 IPVDAKVGY 9 Unmodified _IPVDAKVGY_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2722473144531 2 481.271293 960.528032 0.78371 0.00037718 0.57268 0.00027561 1.3564 0.00065279 481.2717670632317 43.554 0.42414 38.789 38.595 39.019 -4.7648 65 26 3 0 0 0 0.05447 2 26551 26423;26551 43.858 7.7313 1 51436000 24161 1796 16376 16692 28526;28527 28527 0.04618955557282334 IPVDENAVHVL 11 Unmodified _IPVDENAVHVL_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12;ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENSG00000244462|ENST00000374114|RBM12;ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3307495117188 2 603.32987 1204.64519 0.64628 0.00038992 -0.35845 -0.00021626 0.28783 0.00017366 603.3299194512377 54.525 0.24255 54.525 54.398 54.641 0 21 10 3 0 0 0 0.33612 1 30266 30266 24.882 14.058 1 1461600 24162 10730;11748 16377 16693 28528 28528 0.05105068706234306 IPVDISDSDM 10 Oxidation (M) _IPVDISDSDM(Oxidation (M))_ IPVDISDSDM(1) IPVDISDSDM(61) 0 0 1 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2453002929688 2 554.247354 1106.48016 0.099804 5.5316E-05 -0.77305 -0.00042846 -0.67324 -0.00037314 554.2467578392102 41.74 0.25612 41.74 41.645 41.901 0 20 12 2 0 0 0 0.043729 1 22551 22551 61.357 29.052 1 3149600 24163 6997 16378 16694 28529 28529 1203 -0.06882531215728704 IPVDISDSDMM 11 2 Oxidation (M) _IPVDISDSDM(Oxidation (M))M(Oxidation (M))_ IPVDISDSDM(1)M(1) IPVDISDSDM(69)M(69) 0 0 2 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7649536132812 2 627.765054 1253.51555 -0.062963 -3.9526E-05 -0.36625 -0.00022992 -0.42921 -0.00026944 627.7649649010447 41.931 0.33464 41.931 41.751 42.086 0 41 17 3 0 0 0 0.0088414 1 22632 22632 69.105 41.476 1 7431900 24164 6997 16379 16695 28530 28530 1203;1204 -0.10106236750220887 IPVDNGTLTDF 11 Unmodified _IPVDNGTLTDF_ 0 0 0 ENSG00000115942|ENST00000234296|ORC2;ENST00000464147.1_1_2:201776026-201778173:-|nuORF ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2990112304688 2 596.298236 1190.58192 -0.35684 -0.00021278 2.9035 0.0017313 2.5466 0.0015185 596.2999208357317 22.65 0.14425 22.65 22.55 22.694 0 8 6 2 0 0 0 0.721 1 11537 11537 2.2828 0.43854 1 434770 24165 3175 16380 16696 28531 28531 -0.005749168016791373 IPVDSNHNF 9 Unmodified _IPVDSNHNF_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.751220703125 2 521.751256 1041.48796 -0.42981 -0.00022425 0.77839 0.00040613 0.34859 0.00018188 521.7513607401445 32.033 0.30325 32.033 31.88 32.184 0 28 14 3 0 0 0 0.044011 1 16695 16695 47.749 29.614 1 2216100 24166 1358 16381 16697 28532 28532 -0.03112591113290364 IPVDTLITY 9 Unmodified _IPVDTLITY_ 0 0 0 nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D;PDE4D|p.L448I|1|0.07|ENSG00000113448|chr5:58989865-58989865|G/T|missense_variant nc|ENSG00000113448|Q08499-5|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7582397460938 2 517.792058 1033.56956 0.6896 0.00035707 0.82903 0.00042926 1.5186 0.00078633 517.7924792368626 73.634 0.19463 73.634 73.568 73.763 0 12 7 2 0 0 0 0.19891 1 41031 41031 11.64 0.81637 1 358180 24167 2968 16382 16698 28533 28533 0.054120915259545654 IPVDTLITYL 10 Unmodified _IPVDTLITYL_ 0 0 0 nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5590209960938 3 383.225152 1146.65363 -0.54912 -0.00021044 -0.46151 -0.00017686 -1.0106 -0.0003873 383.2251713482725 18.873 0.095844 18.896 18.83 18.926 0.023106 12 7 2 0 0 0 0.69626 1 9486 9486 3.3196 0 1 605190 24168 2968 16383 16699 28534 28534 0.08616622622866998 IPVDTVLTM 9 Oxidation (M) _IPVDTVLTM(Oxidation (M))_ IPVDTVLTM(1) IPVDTVLTM(44) 0 0 1 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7709045410156 2 502.770268 1003.52598 0.43744 0.00021993 0.48945 0.00024608 0.92689 0.00046601 502.77065474812156 54.981 0.31812 54.981 54.83 55.149 0 26 11 3 0 0 0 0.052168 1 30544 30544 44.407 15.92 1 5728700 24169 4609 16384 16700 28535 28535 839 0.024361587571547716 IPVDTVLTM 9 Oxidation (M) _IPVDTVLTM(Oxidation (M))_ IPVDTVLTM(1) IPVDTVLTM(51) 0 0 1 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7708435058594 2 502.770268 1003.52598 -0.013989 -7.0333E-06 -0.17566 -8.8318E-05 -0.18965 -9.5352E-05 502.77046362741214 55.251 0.3129 55.251 55.101 55.414 0 29 13 3 0 0 0 0.038285 1 30655 30655 50.855 27.707 1 7520900 24170 4609 16384 16700 28536 28536 839 0.024361587571547716 IPVDTVLTM 9 Oxidation (M) _IPVDTVLTM(Oxidation (M))_ IPVDTVLTM(1) IPVDTVLTM(54) 0 0 1 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MSMS AL20221201_MKP_PDAC_01 4 502.7706604003906 2 502.770268 1003.52598 NaN NaN NaN NaN NaN NaN NaN 63.516 1 57.34 56.84 57.84 -6.1757 0 0 0 0.060495 1 41075 41075 53.576 17.531 1 24171 4609 16384 16700 28537 28537 839 0.024361587571547716 IPVDTVLTM 9 Oxidation (M) _IPVDTVLTM(Oxidation (M))_ IPVDTVLTM(1) IPVDTVLTM(67) 0 0 1 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MSMS AL20221201_MKP_PDAC_01 4 502.770751953125 2 502.770268 1003.52598 NaN NaN NaN NaN NaN NaN NaN 63.698 1 57.522 57.022 58.022 -6.1757 0 0 0 0.029091 1 41207 41207 67.344 16.489 1 24172 4609 16384 16700 28538 28538 839 0.024361587571547716 IPVDTVLTM 9 Unmodified _IPVDTVLTM_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7737426757812 2 494.772811 987.531069 0.52409 0.0002593 1.1674 0.00057762 1.6915 0.00083693 494.7730618067056 82.142 0.46696 75.966 75.73 76.197 -6.1757 50 25 3 0 0 0 0.038285 2 53900 53900;54028 50.855 16.753 1 20477000 24173 4609 16384 16701 28539;28540 28539 0.03680462619774971 IPVDTVVNL 9 Unmodified _IPVDTVVNL_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MSMS AL20221201_MKP_PDAC_01 4 485.2830505371094 2 485.2844 968.554247 NaN NaN NaN NaN NaN NaN NaN 78.172 1 71.997 71.497 72.497 -6.1757 0 0 0 0.08978 1 51157 51157 46.021 0 1 24174 885 16385 16702 28541 28541 0.06871224728752168 IPVEADFLYAY 11 Unmodified _IPVEADFLYAY_ 0 0 0 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3275146484375 2 650.826629 1299.63871 0.38281 0.00024914 -0.47282 -0.00030773 -0.090014 -5.8583E-05 650.8261904952255 89.85 0.38503 89.349 89.127 89.512 -0.50171 42 19 3 0 0 0 0.71728 1 49057 49057 5.7319 1.4026 1 1704500 24175 7175 16386 16703 28542 28542 0.0008713075487776223 IPVEADFLYAY 11 Unmodified _IPVEADFLYAY_ 0 0 0 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.32763671875 2 650.826629 1299.63871 0.62112 0.00040424 -0.29384 -0.00019124 0.32728 0.000213 650.8263202942096 99.125 0.16729 92.95 92.841 93.009 -6.1757 28 9 4 0 0 0 0.047268 1 65897 65897 74.929 53.392 1 97478000 24176 7175 16386 16703 28543 28543 0.0008713075487776223 IPVEEPLPF 9 Unmodified _IPVEEPLPF_ 0 0 0 ENSG00000196476|ENST00000360321|C20orf96 ENSG00000196476|ENST00000360321|C20orf96 ENSG00000196476|ENST00000360321|C20orf96 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7872314453125 2 520.786776 1039.559 0.39184 0.00020406 -1.3698 -0.00071338 -0.97798 -0.00050932 520.7868298990948 82.749 0.40002 82.749 82.56 82.96 0 55 17 4 0 0 0 0.052168 1 45907 45907 44.407 31.875 1 3093300 24177 9826 16387 16704 28544 28544 0.04080108871517041 IPVEGELLF 9 Unmodified _IPVEGELLF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7872009277344 2 508.786776 1015.559 0.36357 0.00018498 0.4677 0.00023796 0.83127 0.00042294 508.7869395889195 88.053 0.5228 88.053 87.788 88.311 0 73 27 3 0 0 0 0.023164 1 48753 48753 60.39 22.238 1 3308500 24178 4412 16388 16705 28545 28545 0.05184108871526405 IPVEGELLF 9 Unmodified _IPVEGELLF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.786865234375 2 508.786776 1015.559 0.18641 9.4844E-05 1.144 0.00058208 1.3305 0.00067692 508.78735006858534 88.534 0.42551 88.03 87.825 88.25 -0.50423 44 18 3 0 0 0 0.087258 1 48391 48391 36.044 11.37 1 1182900 24179 4412 16388 16705 28546 28546 0.05184108871526405 IPVEGELLF 9 Unmodified _IPVEGELLF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 508.7869873046875 2 508.786776 1015.559 NaN NaN NaN NaN NaN NaN NaN 97.883 1 91.707 91.207 92.207 -6.1757 0 0 0 0.029091 1 64880 64880 67.344 16.489 1 24180 4412 16388 16705 28547 28547 0.05184108871526405 IPVEGELLF 9 Unmodified _IPVEGELLF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 508.7872009277344 2 508.786776 1015.559 NaN NaN NaN NaN NaN NaN NaN 98.152 1 91.977 91.477 92.477 -6.1757 0 0 0 0.043758 1 65072 65072 60.39 13.469 1 24181 4412 16388 16705 28548 28548 0.05184108871526405 IPVEQKEGAF 10 Unmodified _IPVEQKEGAF_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2981567382812 2 559.298039 1116.58152 -0.22501 -0.00012585 0.084374 4.719E-05 -0.14063 -7.8657E-05 559.2980827430805 34.945 0.4147 34.945 34.753 35.167 0 66 21 4 0 0 0 0.078417 2 18379 18379;18486 60.074 36.053 1 44320000 24182 7383 16389 16706 28549;28550 28549 0.027897082691197284 IPVEQKEGAF 10 Unmodified _IPVEQKEGAF_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2987670898438 2 559.298039 1116.58152 0.46736 0.0002614 0.098905 5.5318E-05 0.56627 0.00031671 559.2980334716244 39.889 0.40638 35.359 35.062 35.469 -4.5294 66 26 3 0 0 0 0.013158 1 23623 23623 96.111 27.006 1 93868000 24183 7383 16389 16706 28551 28551 0.027897082691197284 IPVESEAR 8 Unmodified _IPVESEAR_ 0 0 0 REV__ENST00000439296.2_1_1:243289753-243299542:-|nuORF REV__ENST00000439296.2_1_1:243289753-243299542:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.743408203125 2 450.742899 899.471246 1.029 0.00046382 -0.23802 -0.00010728 0.791 0.00035654 450.74296148150376 36.842 0.27807 32.558 32.371 32.65 -4.2835 25 16 2 0 0 0 0.72664 1 21474 21474 14.838 0.93222 1 5683000 + 24184 20663 16390 16707 28552 28552 0.017489080007521807 IPVEVVLKM 9 Oxidation (M) _IPVEVVLKM(Oxidation (M))_ IPVEVVLKM(1) IPVEVVLKM(52) 0 0 1 ENSG00000163655|ENST00000496455|GMPS;ENST00000514075.2_1_4:8176279-8176723:+|nuORF;nc|ENSG00000163655|P49915-2|GMPS ENSG00000163655|ENST00000496455|GMPS ENSG00000163655|ENST00000496455|GMPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.31201171875 2 522.312103 1042.60965 0.26709 0.00013951 0.077657 4.0561E-05 0.34475 0.00018007 522.3121038278148 53.131 0.32623 52.679 52.574 52.9 -0.45173 23 16 2 0 0 0 0.036857 1 28751 28751 51.63 26.23 1 1694000 24185 7042 16391 16708 28553 28553 1207 0.0900531492486607 IPVFFAFR 8 Unmodified _IPVFFAFR_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.5366516113281 2 498.786913 995.559273 NaN NaN NaN NaN NaN NaN NaN 21.397 1 21.411 20.911 21.911 0.013796 0 0 0 0.94749 1 10954 10954 11.114 0 1 24186 3859 16392 16709 28554 28554 0.06131573382037914 IPVFLRHAEL 10 Unmodified _IPVFLRHAEL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.9048156738281 3 398.904636 1193.69208 0.51532 0.00020556 1.116 0.00044516 1.6313 0.00065072 398.9046599073599 56.938 0.41529 56.869 56.619 57.034 -0.068737 50 20 4 0 0 0 0.39689 1 30973 30973 21.799 1.2185 1 73978000 24187 15906;14132 16393 16710 28555 28555 0.10297973048045606 IPVFLRHAEL 10 Unmodified _IPVFLRHAEL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.9051208496094 3 398.904636 1193.69208 1.385 0.00055249 -0.265 -0.00010571 1.12 0.00044678 398.9045497283973 88.299 0.94736 82.123 81.476 82.424 -6.1757 160 52 4 0 0 0 0.24975 4 58275 57905;58022;58275;58411 30.431 11.71 1 121930000 24188 15906;14132 16393 16710 28556;28557;28558;28559 28558 0.10297973048045606 IPVFLRHAEL 10 Unmodified _IPVFLRHAEL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.854248046875 2 597.853316 1193.69208 0.76522 0.00045749 0.36765 0.0002198 1.1329 0.00067729 597.8533397385493 88.258 0.60307 82.082 81.673 82.276 -6.1757 75 33 3 0 0 0 0.00072403 3 58109 57982;58109;58240 121.53 62.855 1 31067000 24189 15906;14132 16393 16710 28560;28561;28562 28561 0.10297973048045606 IPVGKLALY 9 Unmodified _IPVGKLALY_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1;ENST00000525957.1_1_11:86200203-86209163:-|nuORF;nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3080749511719 2 487.307678 972.600803 0.63191 0.00030794 0.17659 8.6055E-05 0.8085 0.00039399 487.30766066483153 59.077 0.30849 59.016 58.839 59.147 -0.060719 35 14 3 0 0 0 0.047196 1 32170 32170 46.021 5.5724 1 8372000 24190 916 16394 16711 28563 28563 0.1134070935067939 IPVGKLALY 9 Unmodified _IPVGKLALY_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1;ENST00000525957.1_1_11:86200203-86209163:-|nuORF;nc|ENSG00000151376|Q16798-2|ME3;ENSG00000151376|ENST00000524826|ME3 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.3094177246094 2 487.307678 972.600803 0.95655 0.00046614 1.1186 0.00054512 2.0752 0.0010113 487.30853187313 64.839 0.35773 58.663 58.54 58.897 -6.1757 33 19 2 0 0 0 0.013323 1 42052 42052 71.134 24.213 1 19927000 24191 916 16394 16711 28564 28564 0.1134070935067939 IPVGNEEESF 10 Unmodified _IPVGNEEESF_ 0 0 0 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 MSMS AL20221201_MKP_PDAC_01 4 560.7628173828125 2 560.761486 1119.50842 NaN NaN NaN NaN NaN NaN NaN 39.821 1 35.292 34.792 35.792 -4.5294 0 0 0 0.48706 1 23692 23692 26.884 1.4843 1 + 24192 29563 16395 16712 28565 28565 -0.046554652441500366 IPVGSGLGY 9 Unmodified _IPVGSGLGY_ 0 0 0 ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENST00000569969.5_2_16:28986191-28992937:+|nuORF;nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 ENSG00000169682|ENST00000311008|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 862.4688720703125 1 862.466895 861.459619 -0.52177 -0.00045001 0.4459 0.00038457 -0.075874 -6.5439E-05 862.4676121044001 51.238 0.19605 50.825 50.68 50.876 -0.41351 16 9 2 0 0 0 0.0090851 1 27572 27572 85.357 40.95 1 1153300 24193 7899 16396 16713 28566 28566 0.023347109774249475 IPVGSGLGY 9 Unmodified _IPVGSGLGY_ 0 0 0 ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1;ENST00000569969.5_2_16:28986191-28992937:+|nuORF;nc|ENSG00000182557|Q6ZMD2-2|SPNS3;ENSG00000182557|ENST00000355530|SPNS3 ENSG00000169682|ENST00000311008|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 862.46728515625 1 862.466895 861.459619 1.2737 0.0010985 1.3078 0.0011279 2.5815 0.0022265 862.4673553559555 58.797 0.41073 52.722 52.509 52.92 -6.0745 34 22 2 0 0 0 1.2707E-06 2 37630 37630;37755 161.89 91.179 1 10570000 24194 7899 16396 16713 28567;28568 28567 0.023347109774249475 IPVGTHEF 8 Unmodified _IPVGTHEF_ 0 0 0 ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;nc|ENSG00000273749|Q7L576-3|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2345275878906 2 450.23471 898.454868 0.34859 0.00015695 -0.25127 -0.00011313 0.097321 4.3817E-05 450.2346916868832 37.359 0.22015 37.359 37.238 37.458 0 15 11 2 0 0 0 0.24071 1 19861 19861 63.563 13.894 1 3783600 24195 10896 16397 16714 28569 28569 0.001578268346634104 IPVHDGYVL 9 Unmodified _IPVHDGYVL_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7787475585938 2 506.776742 1011.53893 -0.046043 -2.3334E-05 0.44104 0.00022351 0.395 0.00020018 506.77697817413804 48.86 0.34636 48.86 48.658 49.004 0 38 16 3 0 0 0 0.0090851 2 26769 26769;26883 85.357 49.313 1 10852000 24196 4829 16398 16715 28570;28571 28570 0.03362357931564475 IPVHDGYVL 9 Unmodified _IPVHDGYVL_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7775268554688 2 506.776742 1011.53893 0.068696 3.4813E-05 1.1565 0.00058608 1.2252 0.0006209 506.7772021989808 49.099 0.34528 48.727 48.558 48.903 -0.37172 38 16 3 0 0 0 0.070838 1 26351 26351 39.957 17.221 1 5356500 24197 4829 16398 16715 28572 28572 0.03362357931564475 IPVHVNRF 8 Unmodified _IPVHVNRF_ 0 0 0 ENSG00000164900|ENST00000297537|GBX1 ENSG00000164900|ENST00000297537|GBX1 ENSG00000164900|ENST00000297537|GBX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2872924804688 2 491.285069 980.555585 1.5458 0.00075941 4.3499 0.002137 5.8956 0.0028964 491.286131023348 82.452 0.29015 82.514 82.347 82.637 0.062004 13 10 2 0 0 0 0.76859 1 45641 45641 11.114 1.767 1 2955500 24198 7260 16399 16716 28573 28573 0.06452903608180804 IPVISDYLL 9 Unmodified _IPVISDYLL_ 0 0 0 ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.803955078125 2 516.802426 1031.5903 0.62662 0.00032384 -0.8701 -0.00044967 -0.24347 -0.00012583 516.8020363838198 101.81 0.080803 95.632 95.6 95.68 -6.1757 7 5 2 0 0 0 0.22317 1 68338 68338 20.871 1.6142 1 27254000 24199 9947 16400 16717 28574 28574 0.07576681905629812 IPVISEKPLL 10 Unmodified _IPVISEKPLL_ 0 0 0 nc|ENSG00000140280|Q8IV50-2|LYSMD2;ENSG00000140280|ENST00000267838|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8521118164062 2 554.85245 1107.69035 NaN NaN NaN NaN NaN NaN NaN 100.5 1 100.46 99.956 100.96 -0.04216 0 0 0 0.91954 1 55827 55827 12.532 0.89125 1 24200 5217 16401 16718 28575 28575 0.14080919239427203 IPVIVTEQY 9 Unmodified _IPVIVTEQY_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2953491210938 2 531.297507 1060.58046 0.25178 0.00013377 -0.35497 -0.00018859 -0.10319 -5.4826E-05 531.2972997461072 62.032 0.50403 62.032 61.842 62.346 0 53 24 4 0 0 0 0.016494 2 34529 34529;34637 67.035 36.811 1 17314000 24201 940 16402 16719 28576;28577 28576 0.05259493900234702 IPVIVTEQY 9 Unmodified _IPVIVTEQY_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2974243164062 2 531.297507 1060.58046 0.53339 0.00028339 -2.0895 -0.0011102 -1.5561 -0.00082677 531.7972432171886 62.674 0.34902 62.187 61.957 62.306 -0.48673 43 16 3 0 0 0 0.016494 1 34094 34094 67.035 34.73 1 19228000 24202 940 16402 16719 28578 28578 0.05259493900234702 IPVIVTEQY 9 Unmodified _IPVIVTEQY_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2981567382812 2 531.297507 1060.58046 0.69514 0.00036933 0.07989 4.2445E-05 0.77503 0.00041177 531.2974250730751 69.586 0.49545 63.41 63.153 63.648 -6.1757 85 26 5 0 0 0 0.027803 2 45392 45392;45508 56.541 33.393 1 106510000 24203 940 16402 16719 28579;28580 28579 0.05259493900234702 IPVKLFAANY 10 Unmodified _IPVKLFAANY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3318481445312 2 568.329142 1134.64373 0.97548 0.00055439 -0.088582 -5.0343E-05 0.8869 0.00050405 568.3290669039351 64.328 0.47035 64.317 64.135 64.606 -0.010536 56 23 4 0 0 0 0.011118 1 35184 35184 85.642 28.17 1 17975000 24204 7082 16403 16720 28581 28581 0.08179479408136103 IPVKPVATETL 11 Unmodified _IPVKPVATETL_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3522338867188 2 584.352814 1166.69108 NaN NaN NaN NaN NaN NaN NaN 3.599 1 3.5866 3.0866 4.0866 -0.012334 0 0 0 0.94337 1 1829 1829 0 0 1 24205 4736 16404 16721 28582 28582 0.1143971388846694 IPVKTNTFF 9 Unmodified _IPVKTNTFF_ 0 0 0 ENST00000337702.4_1_5:40715322-40715454:-|nuORF ENST00000337702.4_1_5:40715322-40715454:-|nuORF ENST00000337702.4_1_5:40715322-40715454:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.2031555175781 3 356.20257 1065.58588 -0.28531 -0.00010163 1.3712 0.00048843 1.0859 0.0003868 356.20314087035484 33.988 0.6315 33.796 33.498 34.13 -0.19131 59 24 3 0 0 0 0.43515 1 17815 17815 14.957 8.7653 1 4024700 24206 11932 16405 16722 28583 28583 0.055712174827021954 IPVKYWHY 8 Unmodified _IPVKYWHY_ 0 0 0 ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8;ENST00000569592.1_1_16:27231674-27232048:+|nuORF;nc|ENSG00000155666|Q8N371-2|KDM8 ENSG00000155666|ENST00000286096|KDM8 ENSG00000155666|ENST00000286096|KDM8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2706298828125 2 553.295102 1104.57565 0.6359 0.00035184 1.5871 0.00087813 2.223 0.00123 553.2956628293256 53.659 0.27477 53.208 53.087 53.362 -0.45173 20 13 2 0 0 0 8.7369 1 29044 29044 14.582 0 1 1322700 24207 6403 16406 16723 28584 28584 0.027546545481072826 IPVLDRIRY 9 Unmodified _IPVLDRIRY_ 0 0 0 nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2343139648438 3 382.232752 1143.67643 0.30873 0.00011801 2.1658 0.00082784 2.4745 0.00094584 382.23365060192697 54.941 0.61609 54.872 54.522 55.138 -0.068737 88 30 4 0 0 0 0.20507 1 29848 29848 22.658 1.0679 1 14078000 24208 7320 16407 16724 28585 28585 0.11033686530981868 IPVLDRIRY 9 Unmodified _IPVLDRIRY_ 0 0 0 nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2330627441406 3 382.232752 1143.67643 1.1685 0.00044663 -0.18605 -7.1113E-05 0.98244 0.00037552 382.56708103456003 78.064 0.74291 71.888 71.428 72.171 -6.1757 84 42 3 0 0 0 0.044042 3 51166 50887;51017;51166 47.732 26.142 1 22749000 24209 7320 16407 16724 28586;28587;28588 28588 0.11033686530981868 IPVLIFQAY 9 Unmodified _IPVLIFQAY_ 0 0 0 ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENSG00000142089|ENST00000399808|IFITM3 ENSG00000142089|ENST00000399808|IFITM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3128662109375 2 532.312961 1062.61137 0.53534 0.00028497 -0.056613 -3.0136E-05 0.47872 0.00025483 532.3128227903247 100.59 0.29294 94.416 94.291 94.584 -6.1757 50 19 4 0 0 0 0.068777 1 67256 67256 40.449 17.3 1 1814099999.9999998 24210 5390 16408 16725 28589 28589 0.08256692005124933 IPVLVPGIIF 10 Unmodified _IPVLVPGIIF_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MSMS AL20221201_MKP_PDAC_01 4 534.3480224609375 2 534.346803 1066.67905 NaN NaN NaN NaN NaN NaN NaN 102.23 1 96.058 95.558 96.558 -6.1757 0 0 0 0.79473 1 68611 68611 12.532 8.2023 1 24211 2794 16409 16726 28590 28590 0.1483814193593389 IPVMRPLWVQY 11 Unmodified _IPVMRPLWVQY_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.3896484375 2 701.389208 1400.76386 0.85256 0.00059797 0.21489 0.00015072 1.0674 0.00074869 701.3893439578518 96.34 0.18391 90.165 90.069 90.253 -6.1757 17 10 2 0 0 0 1.3386E-08 1 63870 63870 106.94 77.859 1 9676600 24212 16072 16410 16727 28591 28591 0.07951144410230881 IPVNEKDTLTY 11 Unmodified _IPVNEKDTLTY_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.8367309570312 2 646.840268 1291.66598 -0.62081 -0.00040156 0.025564 1.6536E-05 -0.59524 -0.00038503 646.840068820439 41.077 0.43325 41.077 40.911 41.344 0 74 24 4 0 0 0 2.2539E-08 2 22063 22063;22170 125.18 73.551 1 72174000 24213 7139 16411 16728 28592;28593 28592 0.031816142952493465 IPVNEKDTLTY 11 Unmodified _IPVNEKDTLTY_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8399658203125 2 646.840268 1291.66598 0.70848 0.00045827 -0.13056 -8.4453E-05 0.57792 0.00037382 646.8400835855316 47.14 0.57112 42.06 41.825 42.397 -5.0805 127 44 4 0 0 0 2.2539E-08 3 29073 29073;29204;29334 135.72 97.104 1 152140000 24214 7139 16411 16728 28594;28595;28596 28594 0.031816142952493465 IPVNEKDTLTY 11 Unmodified _IPVNEKDTLTY_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 646.840268 1291.66598 -0.25532 -0.00016515 -0.45953 -0.00029724 -0.71485 -0.00046239 646.8399525572888 41.469 0.21018 41.166 41.028 41.238 -0.30304 0.044655 -0.00043651 NaN 125.18 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2815600 24215 7139 16411 16728 0.031816142952493465 IPVNGPRL 8 Unmodified _IPVNGPRL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2664794921875 2 433.266345 864.518136 0.64808 0.00028079 1.0173 0.00044077 1.6654 0.00072156 433.26674398263543 44.932 0.29807 40.08 39.918 40.216 -4.852 30 19 2 0 0 0 0.37649 1 27497 27497 46.921 6.4723 1 7779300 24216 6888 16412 16729 28597 28597 0.08045812342561476 IPVNGPRL 8 Unmodified _IPVNGPRL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 433.266345 864.518136 0.17884 7.7485E-05 0.46064 0.00019958 0.63948 0.00027707 433.2667206115182 40.013 0.19032 39.715 39.592 39.782 -0.29716 -0.18213 -0.00025842 NaN 46.921 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1385000 24217 6888 16412 16729 0.08045812342561476 IPVPINAEL 9 Unmodified _IPVPINAEL_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2877502441406 2 483.286943 964.559333 NaN NaN NaN NaN NaN NaN NaN 73.547 1 73.547 73.047 74.047 0 0 0 0 0.7243 1 40947 40947 8.5933 0.68312 1 24218 1657 16413 16730 28598 28598 0.07563528591379054 IPVPINAEL 9 Unmodified _IPVPINAEL_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2866516113281 2 483.286943 964.559333 0.81636 0.00039454 -0.22347 -0.000108 0.59289 0.00028653 483.2868974128889 73.969 0.20805 73.493 73.43 73.638 -0.47588 15 9 2 0 0 0 0.10925 1 40496 40496 32.117 13.982 1 914550 24219 1657 16413 16730 28599 28599 0.07563528591379054 IPVPINAEL 9 Unmodified _IPVPINAEL_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.5660400390625 1 965.566609 964.559333 0.60937 0.00058839 0.434 0.00041905 1.0434 0.0010074 965.5669374634307 74.024 0.23667 73.548 73.43 73.667 -0.47588 17 10 2 0 0 0 0.03568 1 40502 40502 52.268 10.174 1 581750 24220 1657 16413 16730 28600 28600 0.07563528591379054 IPVPVTEAL 9 Unmodified _IPVPVTEAL_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.5557861328125 1 938.55571 937.548434 -0.075687 -7.1037E-05 2.2451 0.0021072 2.1694 0.0020361 938.557794403669 70.241 0.24878 70.241 70.153 70.402 0 18 10 2 0 0 0 0.023164 1 39124 39124 60.39 13.469 1 1275400 24221 748 16414 16731 28601 28601 0.07716126217087549 IPVPVTEAL 9 Unmodified _IPVPVTEAL_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7810668945312 2 469.781493 937.548434 NaN NaN NaN NaN NaN NaN NaN 70.806 1 70.329 69.829 70.829 -0.47735 0 0 0 0.029345 1 38743 38743 67.035 13.46 1 24222 748 16414 16731 28602 28602 0.07716126217087549 IPVPYVEKY 9 Unmodified _IPVPYVEKY_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.308349609375 2 554.307875 1106.6012 0.56686 0.00031422 -1.1424 -0.00063324 -0.57553 -0.00031902 554.3074572860598 52.77 0.28343 52.77 52.596 52.88 0 22 12 2 0 0 0 0.040683 1 29188 29188 49.554 27.808 1 2646400 24223 7583 16415 16732 28603 28603 0.05216084279913957 IPVPYVEKY 9 Unmodified _IPVPYVEKY_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8243408203125 2 554.307875 1106.6012 0.61751 0.00034229 0.35777 0.00019831 0.97528 0.00054061 554.3081009644001 53.365 0.40529 52.914 52.682 53.087 -0.45173 41 19 4 0 0 0 0.16954 1 28839 28839 24.991 14.167 1 8310800 24224 7583 16415 16732 28604 28604 0.05216084279913957 IPVPYVEKY 9 Unmodified _IPVPYVEKY_ 0 0 0 ENSG00000167193|ENST00000300574|CRK;nc|ENSG00000167193|P46108-2|CRK ENSG00000167193|ENST00000300574|CRK ENSG00000167193|ENST00000300574|CRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3068237304688 2 554.307875 1106.6012 1.1876 0.00065829 -0.28639 -0.00015875 0.9012 0.00049954 554.3070888250555 59.278 0.6783 53.203 52.719 53.397 -6.0745 60 37 3 0 0 0 0.040683 2 37939 37939;38072 49.554 13.427 1 57624000 24225 7583 16415 16732 28605;28606 28605 0.05216084279913957 IPVQRHVTM 9 Oxidation (M) _IPVQRHVTM(Oxidation (M))_ IPVQRHVTM(1) IPVQRHVTM(44) 0 0 1 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.801025390625 2 548.800226 1095.5859 0.58354 0.00032025 -0.29928 -0.00016424 0.28426 0.000156 548.8005751409601 18.181 0.24793 15.56 15.442 15.69 -2.6215 34 20 3 0 0 0 0.05483 1 9539 9539 43.772 23.319 1 2919400 24226 9762 16416 16733 28607 28607 1569 0.041928942110416756 IPVQRHVTM 9 Unmodified _IPVQRHVTM_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8713073730469 3 360.870938 1079.59098 1.0975 0.00039604 -0.44931 -0.00016214 0.64816 0.0002339 360.8708972999516 27.675 0.32871 24.638 24.474 24.803 -3.0365 42 16 4 0 0 0 0.07087 1 15329 15329 37.075 15.538 1 27980000 24227 9762 16416 16734 28608 28608 0.05437198073673244 IPVQRHVTM 9 Unmodified _IPVQRHVTM_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8033447265625 2 540.802768 1079.59098 0.28445 0.00015383 0.35453 0.00019173 0.63897 0.00034556 540.8028483328336 27.687 0.19344 24.651 24.541 24.734 -3.0365 13 9 2 0 0 0 0.011671 1 15371 15371 75.761 41.658 1 6199800 24228 9762 16416 16734 28609 28609 0.05437198073673244 IPVRCYSAEV 10 Unmodified _IPVRCYSAEV_ 0 0 0 nc|ENSG00000164885|Q00535-2|CDK5;ENSG00000164885|ENST00000485972|CDK5 nc|ENSG00000164885|Q00535-2|CDK5 nc|ENSG00000164885|Q00535-2|CDK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7915649414062 2 568.792066 1135.56958 0.37004 0.00021047 -1.0838 -0.00061645 -0.71375 -0.00040598 568.7917102261928 55.711 0.37347 55.233 55.048 55.422 -0.47798 34 17 4 0 0 0 0.48629 1 30246 30246 19.362 7.1213 1 2060600 24229 7257 16417 16735 28610 28610 0.007217682542886905 IPVSAFLL 8 Unmodified _IPVSAFLL_ 0 0 0 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.529296875 1 859.528767 858.521491 0.80048 0.00068804 0.10067 8.6527E-05 0.90115 0.00077457 859.5297219550794 100.73 0.11151 94.554 94.472 94.584 -6.1757 11 7 2 0 0 0 0.15234 1 67421 67421 86.121 19.086 1 16847000 24230 2436 16418 16736 28611 28611 0.08657062396559922 IPVSLGQVSF 10 Unmodified _IPVSLGQVSF_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1046.58984375 1 1046.58807 1045.5808 0.57976 0.00060677 -0.54121 -0.00056642 0.038548 4.0344E-05 1046.5879790157546 75.509 0.40182 75.557 75.348 75.75 0.047943 42 18 3 0 0 0 0.34435 1 41740 41740 24.882 1.0918 1 5432100 24231 9384 16419 16737 28612 28612 0.059829136200733046 IPVSSNRRDEY 11 Unmodified _IPVSSNRRDEY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 445.8930053710938 3 445.893236 1334.65788 -0.19888 -8.8678E-05 -0.17854 -7.961E-05 -0.37742 -0.00016829 445.89316798055955 19.711 0.20769 19.711 19.607 19.815 0 92 31 4 0 0 0 0.5229 1 9877 9877 8.7518 0 1 5431000 24232 3021 16420 16738 28613 28613 0.00393480098477994 IPVSSNRRDEY 11 Unmodified _IPVSSNRRDEY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.8940124511719 3 445.893236 1334.65788 0.98919 0.00044107 0.28746 0.00012818 1.2766 0.00056925 445.89350621964917 22.092 0.34682 19.357 19.175 19.522 -2.7348 61 19 4 0 0 0 0.5229 1 11853 11853 8.7518 4.3456 1 11264000 24233 3021 16420 16738 28614 28614 0.00393480098477994 IPVSSVIHY 9 Unmodified _IPVSSVIHY_ 0 0 0 ENST00000549645.5_1_12:53400267-53402412:+|nuORF ENST00000549645.5_1_12:53400267-53402412:+|nuORF ENST00000549645.5_1_12:53400267-53402412:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7831420898438 2 507.784567 1013.55458 -0.088339 -4.4857E-05 2.6201 0.0013304 2.5318 0.0012856 507.78387086648496 51.882 0.26484 51.448 51.305 51.569 -0.43367 33 13 3 0 0 0 0.023164 1 27989 27989 60.39 16.531 1 6990900 24234 15151 16421 16739 28615 28615 0.04834644448612835 IPVSSVIHY 9 Unmodified _IPVSSVIHY_ 0 0 0 ENST00000549645.5_1_12:53400267-53402412:+|nuORF ENST00000549645.5_1_12:53400267-53402412:+|nuORF ENST00000549645.5_1_12:53400267-53402412:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7845153808594 2 507.784567 1013.55458 0.90966 0.00046191 2.0806 0.0010565 2.9903 0.0015184 507.78442232018404 57.572 0.32529 51.544 51.372 51.698 -6.0275 26 17 2 0 0 0 0.038285 1 36842 36842 50.855 14.728 1 25936000 24235 15151 16421 16739 28616 28616 0.04834644448612835 IPVSTTPVA 9 Unmodified _IPVSTTPVA_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7585144042969 2 442.758018 883.501483 0.75888 0.000336 -0.18082 -8.0061E-05 0.57806 0.00025594 442.7579162601413 48.097 0.35806 42.863 42.675 43.033 -5.2339 37 21 2 0 0 0 0.052168 1 29916 29916 44.407 6.2558 1 16935000 24236 7922 16422 16740 28617 28617 0.055072666659384595 IPVSTTPVL 9 Unmodified _IPVSTTPVL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7812194824219 2 463.781493 925.548434 -0.40099 -0.00018597 0.17358 8.0502E-05 -0.22741 -0.00010547 463.7814835297787 60.966 0.42329 60.477 60.291 60.715 -0.48932 44 20 3 0 0 0 0.0094915 1 33158 33158 81.864 21.474 1 13207000 24237 7922 16423 16741 28618 28618 0.08268126217080862 IPVSTTPVL 9 Unmodified _IPVSTTPVL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7814636230469 2 463.781493 925.548434 0.67935 0.00031507 -0.099679 -4.6229E-05 0.57968 0.00026884 463.78150415791094 68.306 0.51107 62.13 61.837 62.348 -6.1757 64 30 3 0 0 0 0.0081063 2 44487 44487;44624 93.883 23.168 1 49555000 24238 7922 16423 16741 28619;28620 28619 0.08268126217080862 IPVTEGSSL 9 Unmodified _IPVTEGSSL_ 0 0 0 REV__ENSG00000037637|ENST00000375592|FBXO42 REV__ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.483154296875 1 902.482939 901.475663 -0.15352 -0.00013855 -0.22653 -0.00020444 -0.38005 -0.00034299 902.482875532495 48.304 0.21869 48.304 48.132 48.351 0 13 10 2 0 0 0 0.0048787 1 26468 26468 117.6 28.172 1 2605700 + 24239 17173 16424 16742 28621 28621 0.020983724236884882 IPVTIITGY 9 Unmodified _IPVTIITGY_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.5722045898438 1 976.57136 975.564084 0.62598 0.00061131 0.52529 0.00051298 1.1513 0.0011243 976.571623224649 74.789 0.38927 74.313 74.065 74.454 -0.47588 43 15 4 0 0 0 0.00032477 2 40960 40857;40960 147.83 43.032 1 7535200 24240 4842 16425 16743 28622;28623 28623 0.075324127341446 IPVTIITGY 9 Unmodified _IPVTIITGY_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7895812988281 2 488.789318 975.564084 0.87496 0.00042767 0.20214 9.8802E-05 1.0771 0.00052648 488.7894464076156 74.758 0.38927 74.282 74.065 74.454 -0.47588 36 15 3 0 0 0 0.03327 2 40963 40860;40963 53.576 6.5389 1 2704400 24241 4842 16425 16743 28624;28625 28625 0.075324127341446 IPVTIITGY 9 Unmodified _IPVTIITGY_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 976.571044921875 1 976.57136 975.564084 0.60659 0.00059238 0.066647 6.5085E-05 0.67323 0.00065746 976.5715380429767 74.203 0.35947 74.247 74.074 74.433 0.043983 39 15 3 0 0 0 0.0010099 2 40948 40847;40948 139.54 54.187 1 12504000 24242 4842 16425 16743 28626;28627 28627 0.075324127341446 IPVTIITGY 9 Unmodified _IPVTIITGY_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.5708618164062 1 976.57136 975.564084 0.17688 0.00017274 0.37765 0.0003688 0.55453 0.00054154 976.571507752189 82.272 0.52643 76.097 75.812 76.339 -6.1757 70 28 3 0 0 0 3.299E-05 4 53896 53896;54021;54149;54153 154.46 57.389 1 62339000 24243 4842 16425 16743 28628;28629;28630;28631 28628 0.075324127341446 IPVTIITGY 9 Unmodified _IPVTIITGY_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7897338867188 2 488.789318 975.564084 0.40112 0.00019607 0.26187 0.000128 0.66299 0.00032406 488.7894677884588 82.282 0.59226 76.106 75.812 76.405 -6.1757 82 32 3 0 0 0 0.0094915 1 54150 54150 81.864 21.474 1 74535000 24244 4842 16425 16743 28632 28632 0.075324127341446 IPVTIMDVF 9 Oxidation (M) _IPVTIM(Oxidation (M))DVF_ IPVTIM(1)DVF IPVTIM(44)DVF 0 0 1 ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7794189453125 2 525.780636 1049.54672 0.41193 0.00021658 -0.89698 -0.00047161 -0.48505 -0.00025503 525.7801060789016 84.502 0.44931 84.003 83.753 84.202 -0.49961 48 20 3 0 0 0 0.052168 1 46288 46288 44.407 19.733 1 3558500 24245 1559 16426 16744 28633 28633 263 0.023927491368112896 IPVTIMDVF 9 Unmodified _IPVTIMDVF_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MSMS AL20221201_MKP_PDAC_01 4 517.7843627929688 2 517.783179 1033.5518 NaN NaN NaN NaN NaN NaN NaN 101.11 1 94.937 94.437 95.437 -6.1757 0 0 0 0.036587 1 67776 67776 63.563 25.412 1 24246 1559 16426 16745 28634 28634 0.03637052999442858 IPVTQTQRS 9 Unmodified _IPVTQTQRS_ 0 0 0 ENST00000329321.3_3_2:133403555-133403876:+|nuORF ENST00000329321.3_3_2:133403555-133403876:+|nuORF ENST00000329321.3_3_2:133403555-133403876:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2556762695312 2 515.288005 1028.56146 0.018118 9.3358E-06 0.25227 0.00012999 0.27039 0.00013933 515.287686389905 60.215 0.36155 59.724 59.566 59.927 -0.49079 33 17 3 0 0 0 0.20139 1 32827 32827 10.824 10.824 1 5744000 24247 11845 16427 16746 28635 28635 0.04831957329179204 IPVTSSTSTC 10 Unmodified _IPVTSSTSTC_ 0 0 0 REV__ENSG00000091010|ENST00000646991|POU4F3 REV__ENSG00000091010|ENST00000646991|POU4F3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2415161132812 2 498.239332 994.464112 0.47836 0.00023834 0.91681 0.00045679 1.3952 0.00069513 498.2398877337481 67.248 0.257 67.248 67.085 67.342 0 16 10 2 0 0 0 0.62068 1 37518 37518 10.074 0.72649 1 518990 + 24248 17878 16428 16747 28636 28636 -0.0333419266198689 IPVYEQQKSVF 11 Unmodified _IPVYEQQKSVF_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.3594970703125 2 669.358628 1336.7027 0.80602 0.00053951 -0.47812 -0.00032004 0.32789 0.00021948 669.3582445635981 49.836 0.34961 49.444 49.238 49.588 -0.3923 53 17 4 0 0 0 0.0043436 2 26781 26781;26886 76.416 60.267 1 29940000 24249 2482 16429 16748 28637;28638 28637 0.04781910911788145 IPVYEQQKSVF 11 Unmodified _IPVYEQQKSVF_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.3594360351562 2 669.358628 1336.7027 1.0085 0.00067504 -1.2056 -0.000807 -0.19714 -0.00013195 669.3581009840874 49.489 0.29782 49.44 49.27 49.568 -0.048824 25 14 3 0 0 0 0.055321 1 26732 26732 49.742 36.699 1 3563800 24250 2482 16429 16748 28639 28639 0.04781910911788145 IPVYEQQKSVF 11 Unmodified _IPVYEQQKSVF_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3594970703125 2 669.358628 1336.7027 0.68473 0.00045833 -0.061542 -4.1194E-05 0.62318 0.00041713 669.3586148586727 55.661 0.4947 49.739 49.474 49.969 -5.9211 91 29 4 0 0 0 3.3879E-11 2 35353 35353;35483 125.66 79.957 1 122330000 24251 2482 16429 16748 28640;28641 28640 0.04781910911788145 IPVYEQQKSVF 11 Unmodified _IPVYEQQKSVF_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 669.358628 1336.7027 0.31616 0.00021162 0.58962 0.00039467 0.90578 0.00060629 669.860296933789 49.4 0.21389 49.4 49.296 49.51 0 -0.10593 0.0011595 NaN 125.66 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2451500 24252 2482 16429 16748 0.04781910911788145 IPVYVKHNISF 11 Unmodified _IPVYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.5838623046875 3 439.583562 1315.72886 0.80305 0.00035301 -0.36486 -0.00016039 0.43819 0.00019262 439.9176932046644 49.317 0.24158 49.273 49.134 49.376 -0.043694 39 11 4 0 0 0 0.15597 1 26608 26608 35.996 25.845 1 13462000 24253 1034 16430 16749 28642 28642 0.0836222487394025 IPVYVKHNISF 11 Unmodified _IPVYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.81005859375 2 658.871705 1315.72886 0.89676 0.00059085 -0.042973 -2.8314E-05 0.85378 0.00056253 658.8717582974915 49.316 0.16024 49.272 49.175 49.336 -0.04369 12 7 2 0 0 0 0.28583 1 26624 26624 16.566 8.4104 1 1170300 24254 1034 16430 16749 28643 28643 0.0836222487394025 IPVYVKHNISF 11 Unmodified _IPVYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.5836791992188 3 439.583562 1315.72886 0.98336 0.00043227 0.44338 0.0001949 1.4267 0.00062717 439.5836839066006 54.78 0.30767 48.914 48.779 49.087 -5.8653 29 18 2 0 0 0 0.12646 1 34784 34784 39.413 25.894 1 14723000 24255 1034 16430 16749 28644 28644 0.0836222487394025 IPVYVKHSISF 11 Unmodified _IPVYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.580078125 3 430.579929 1288.71796 0.85636 0.00036873 -0.5889 -0.00025357 0.26746 0.00011516 430.5796381234115 50.697 0.23736 50.644 50.51 50.747 -0.053871 29 11 3 0 0 0 0.50539 1 27409 27409 16.137 9.1001 1 5351600 24256 9317 16431 16750 28645 28645 0.08514822499660113 IPWDYDVDL 9 Unmodified _IPWDYDVDL_ 0 0 0 ENSG00000181027|ENST00000318584|FKRP ENSG00000181027|ENST00000318584|FKRP ENSG00000181027|ENST00000318584|FKRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1136.119873046875 1 1135.53062 1134.52334 -0.42649 -0.0004843 0.15371 0.00017454 -0.27279 -0.00030976 1135.5301574119437 80.101 0.23502 80.101 79.99 80.225 0 21 13 2 0 0 0 0.58865 1 44432 44432 2.0598 0 1 859640 24257 8943 16432 16751 28646 28646 -0.038539733761581374 IPWFREESSF 10 Unmodified _IPWFREESSF_ 0 0 0 REV__ENST00000366362.3_1_12:2973410-2973858:-|nuORF REV__ENST00000366362.3_1_12:2973410-2973858:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.3131103515625 2 649.31422 1296.61389 NaN NaN NaN NaN NaN NaN NaN 73.809 1 73.333 72.833 73.833 -0.47588 0 0 0 0.96981 1 40393 40393 3.9444 0.66309 1 + 24258 25953 16433 16752 28647 28647 -0.022555043278771336 IPWGDMASL 9 Unmodified _IPWGDMASL_ 0 0 0 ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENST00000548259.1_1_12:110930799-110939856:-|nuORF ENSG00000111237|ENST00000549578|VPS29 ENSG00000111237|ENST00000549578|VPS29 MSMS AL20221201_MKP_PDAC_01 4 495.2422180175781 2 495.241678 988.468803 NaN NaN NaN NaN NaN NaN NaN 88.1 1 81.924 81.424 82.424 -6.1757 0 0 0 0.029091 1 58111 58111 67.344 33.241 1 24259 2770 16434 16753 28648 28648 -0.02589263728543756 IPWKHAGKQDF 11 Unmodified _IPWKHAGKQDF_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF ENSG00000213928|ENST00000396864|IRF9 ENSG00000213928|ENST00000396864|IRF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.9034118652344 3 442.903295 1325.68806 NaN NaN NaN NaN NaN NaN NaN 27.651 1 27.605 27.105 28.105 -0.046408 0 0 0 0.8881 1 14256 14256 7.846 3.6565 1 24260 10466 16435 16754 28649 28649 0.038238835543097593 IPWKHAGKQDF 11 Unmodified _IPWKHAGKQDF_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF ENSG00000213928|ENST00000396864|IRF9 ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.903076171875 3 442.903295 1325.68806 0.55795 0.00024712 -0.50134 -0.00022204 0.056611 2.5073E-05 442.9032442241589 27.533 0.22008 27.561 27.441 27.661 0.028664 29 9 4 0 0 0 0.064626 1 14294 14294 47.724 14.939 1 19980000 24261 10466 16435 16754 28650 28650 0.038238835543097593 IPWKHAGKQDF 11 Unmodified _IPWKHAGKQDF_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENST00000561412.1_1_14:24630521-24631656:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF ENSG00000213928|ENST00000396864|IRF9 ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.9039611816406 3 442.903295 1325.68806 1.134 0.00050226 -0.14523 -6.4324E-05 0.98877 0.00043793 443.2374002490844 30.876 0.33221 27.379 27.211 27.543 -3.497 21 14 2 0 0 0 0.064626 1 17417 17417 47.724 21.456 1 48174000 24262 10466 16435 16754 28651 28651 0.038238835543097593 IPWKHAGKQDY 11 Unmodified _IPWKHAGKQDY_ 0 0 0 nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4;ENST00000570088.1_1_16:85936621-85936909:+|nuORF;ENSG00000140968|ENST00000268638|IRF8 nc|ENSG00000137265|Q15306-2|IRF4 nc|ENSG00000137265|Q15306-2|IRF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2343444824219 3 448.234933 1341.68297 -0.28407 -0.00012733 -0.39718 -0.00017803 -0.68125 -0.00030536 448.23496515515535 21.707 0.14313 21.73 21.665 21.808 0.022896 11 6 2 0 0 0 0.68995 1 11037 11037 5.1984 1.6058 1 1305300 24263 4918 16436 16755 28652 28652 0.025795796917009284 IPWKHAGKQDY 11 Unmodified _IPWKHAGKQDY_ 0 0 0 nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4;ENST00000570088.1_1_16:85936621-85936909:+|nuORF;ENSG00000140968|ENST00000268638|IRF8 nc|ENSG00000137265|Q15306-2|IRF4 nc|ENSG00000137265|Q15306-2|IRF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2349548339844 3 448.234933 1341.68297 0.52995 0.00023754 -1.0722 -0.00048058 -0.54221 -0.00024304 448.234548605279 21.74 0.15359 21.754 21.668 21.821 0.013796 16 9 2 0 0 0 0.68995 1 11131 11131 5.1984 3.1124 1 1130500 24264 4918 16436 16755 28653 28653 0.025795796917009284 IPWKHAGKQDY 11 Unmodified _IPWKHAGKQDY_ 0 0 0 nc|ENSG00000137265|Q15306-2|IRF4;ENSG00000137265|ENST00000380956|IRF4;ENST00000570088.1_1_16:85936621-85936909:+|nuORF;ENSG00000140968|ENST00000268638|IRF8 nc|ENSG00000137265|Q15306-2|IRF4 nc|ENSG00000137265|Q15306-2|IRF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2349853515625 3 448.234933 1341.68297 0.41507 0.00018605 -1.1307 -0.00050681 -0.71561 -0.00032076 448.23397399911306 24.478 0.37146 21.651 21.501 21.872 -2.8273 53 20 4 0 0 0 0.43683 1 13384 13384 19.615 13.747 1 14845000 24265 4918 16436 16755 28654 28654 0.025795796917009284 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8821411132812 3 406.88172 1217.62333 0.31332 0.00012748 0.57113 0.00023238 0.88445 0.00035987 406.8819158904642 56.798 0.35535 56.729 56.559 56.915 -0.068737 71 17 5 0 0 0 0.14 2 30853 30853;30951 33.445 18.196 1 108920000 24266 8612 16437 16756 28655;28656 28655 0.02322308748330215 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8189086914062 2 609.818941 1217.62333 0.70704 0.00043116 0.30228 0.00018434 1.0093 0.0006155 609.8190753888483 56.81 0.31672 56.741 56.578 56.895 -0.068741 51 15 4 0 0 0 0.029718 2 30866 30866;30962 55.503 35.049 1 33115000 24267 8612 16437 16756 28657;28658 28657 0.02322308748330215 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8822631835938 3 406.88172 1217.62333 1.2211 0.00049684 0.082206 3.3448E-05 1.3033 0.00053029 406.88172359760284 86.018 0.90364 79.842 79.53 80.434 -6.1757 162 49 4 0 0 0 0.10247 5 56656 56516;56656;56785;56911;57036 29.841 24.944 1 128820000 24268 8612 16437 16756 28659;28660;28661;28662;28663 28660 0.02322308748330215 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.82421875 2 609.818941 1217.62333 1.0129 0.00061769 1.4685 0.00089555 2.4814 0.0015132 609.8201166542176 85.984 0.78235 79.808 79.596 80.379 -6.1757 125 42 4 0 0 0 0.07087 1 57035 57035 39.95 7.6442 1 43343000 24269 8612 16437 16756 28664 28664 0.02322308748330215 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 609.818941 1217.62333 0.52993 0.00032316 -0.6809 -0.00041522 -0.15096 -9.2059E-05 610.3196893325756 57.189 0.14934 56.7 56.6 56.75 -0.48974 -0.02075 -0.0010083 NaN 55.503 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1491800 24270 8612 16437 16756 0.02322308748330215 IPWKHIDYF 9 Unmodified _IPWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 406.88172 1217.62333 0.50317 0.00020473 0.24819 0.00010098 0.75135 0.00030571 406.88171210534927 57.22 0.29946 56.73 56.558 56.858 -0.48974 0.00027763 -0.00033536 NaN 33.445 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3109600 24271 8612 16437 16756 0.02322308748330215 IPWLSESL 8 Unmodified _IPWLSESL_ 0 0 0 REV__ENSG00000100024|ENST00000326010|UPB1 REV__ENSG00000100024|ENST00000326010|UPB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2373657226562 2 472.758018 943.501483 0.19179 9.0671E-05 0.12839 6.0698E-05 0.32018 0.00015137 472.7583158123291 65.334 0.23029 65.334 65.272 65.503 0 12 8 2 0 0 0 8.7369 1 36475 36475 22.453 1.5814 1 516170 + 24272 18003 16438 16757 28665 28665 0.02747266665949155 IPWPLEEQF 9 Unmodified _IPWPLEEQF_ 0 0 0 nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7968139648438 2 579.795132 1157.57571 NaN NaN NaN NaN NaN NaN NaN 92.863 1 92.406 91.906 92.906 -0.4574 0 0 0 0.7243 1 50752 50752 8.5933 3.3626 1 24273 8626 16439 16758 28666 28666 0.003226097574497544 IPWQDWKKY 9 Unmodified _IPWQDWKKY_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8881225585938 3 421.888874 1262.64479 1.2297 0.0005188 -2.2808 -0.00096225 -1.0511 -0.00044344 422.22269026073366 49.969 0.32311 49.92 49.784 50.107 -0.048824 31 15 3 0 0 0 0.11784 1 27009 27009 23.801 16.699 1 3387300 24274 4056 16440 16759 28667 28667 0.02397693777038512 IPWTLIDFY 9 Unmodified _IPWTLIDFY_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559459.5_1_15:52543577-52548901:-|nuORF;ENST00000469611.1_1_15:52679971-52688515:-|nuORF;ENST00000560809.5_1_15:52532054-52548856:-|nuORF;ENST00000558902.5_1_15:52529812-52548856:-|nuORF;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MSMS AL20221201_MKP_PDAC_01 4 584.30859375 2 584.307875 1166.6012 NaN NaN NaN NaN NaN NaN NaN 101.72 1 95.546 95.046 96.046 -6.1757 0 0 0 0.036587 1 68276 68276 63.563 35.076 1 24275 4094;7598 16441 16760 28668 28668 0.024560842799019156 IPYAGIDLAVY 11 Unmodified _IPYAGIDLAVY_ 0 0 0 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000125648|ENST00000301454|SLC25A23 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 MSMS AL20221201_MKP_PDAC_01 4 597.823486328125 2 597.823889 1193.63323 NaN NaN NaN NaN NaN NaN NaN 95.153 1 88.977 88.477 89.477 -6.1757 0 0 0 0.22273 1 63023 63023 37.974 18.717 1 24276 16259;16060;3866 16442 16761 28669 28669 0.04415451963063788 IPYDWERMPRW 11 Unmodified _IPYDWERMPRW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 774.8723754882812 2 774.874453 1547.73435 -0.55202 -0.00042775 1.7508 0.0013566 1.1987 0.00092887 774.8754576697374 60.926 0.18362 60.437 60.374 60.558 -0.48932 13 8 2 0 0 0 0.65846 1 33193 33193 8.1555 0.54658 1 6159000 24277 741 16443 16762 28670 28670 -0.017604196059210153 IPYDWERMPRW 11 Unmodified _IPYDWERMPRW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 774.8753662109375 2 774.874453 1547.73435 0.794 0.00061525 1.3034 0.00101 2.0974 0.0016252 774.8756110659846 68.158 0.55032 61.982 61.707 62.257 -6.1757 38 32 2 0 0 0 0.48615 1 44400 44400 17.113 9.5039 1 18648000 24278 741 16443 16762 28671 28671 -0.017604196059210153 IPYEESSVF 9 Unmodified _IPYEESSVF_ 0 0 0 ENSG00000169087|ENST00000306103|HSPBAP1;nc|ENSG00000169087|Q96EW2-3|HSPBAP1;ENST00000465044.5_1_3:122473819-122512560:-|nuORF ENSG00000169087|ENST00000306103|HSPBAP1 ENSG00000169087|ENST00000306103|HSPBAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7550048828125 2 535.755672 1069.49679 0.62013 0.00033224 -0.19516 -0.00010456 0.42496 0.00022768 535.755402218209 73.52 0.72362 73.044 72.804 73.527 -0.47588 74 33 4 0 0 0 0.48152 1 40366 40366 8.5933 2.3875 1 7338200 24279 7833 16444 16763 28672 28672 -0.03517662267472588 IPYHIVNIV 9 Unmodified _IPYHIVNIV_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3170776367188 2 534.316035 1066.61752 0.7014 0.00037477 1.6756 0.0008953 2.377 0.0012701 534.317195247611 64.713 0.42941 64.713 64.425 64.854 1.5259E-05 38 21 2 0 0 0 0.027803 1 35431 35431 56.541 14.447 1 15387000 24280 590 16445 16764 28673 28673 0.08687210236666942 IPYHIVNIV 9 Unmodified _IPYHIVNIV_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.316035 1066.61752 0.21409 0.00011439 -0.39464 -0.00021086 -0.18055 -9.6472E-05 534.3157089842063 65.265 0.25841 64.78 64.64 64.898 -0.48428 0.033921 -0.00049724 NaN 56.541 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3218000 24281 590 16445 16764 0.08687210236666942 IPYHSEVPVSL 11 Unmodified _IPYHSEVPVSL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8321533203125 2 620.832246 1239.64994 -0.13212 -8.2024E-05 0.42499 0.00026385 0.29287 0.00018182 620.8323653811162 56.171 0.3141 56.171 55.987 56.301 0 34 14 3 0 0 0 0.02135 1 31201 31201 81.89 40.051 1 6050100 24282 3108 16446 16765 28674 28674 0.039699528490018565 IPYHSEVPVSL 11 Unmodified _IPYHSEVPVSL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8303833007812 2 620.832246 1239.64994 -0.44832 -0.00027833 -0.59194 -0.0003675 -1.0403 -0.00064583 620.8316953974919 56.638 0.35167 56.152 56.018 56.369 -0.48554 59 20 4 0 0 0 3.9134E-06 2 30715 30715;30830 123.45 48.522 1 33648000 24283 3108 16446 16765 28675;28676 28675 0.039699528490018565 IPYHSEVPVSL 11 Unmodified _IPYHSEVPVSL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8317260742188 2 620.832246 1239.64994 0.12238 7.598E-05 -1.2337 -0.00076589 -1.1113 -0.00068991 620.8314719574512 56.366 0.2254 56.297 56.174 56.4 -0.068737 16 11 2 0 0 0 0.047268 1 30688 30688 47.749 20.12 1 2761500 24284 3108 16446 16765 28677 28677 0.039699528490018565 IPYHSEVPVSL 11 Unmodified _IPYHSEVPVSL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8334350585938 2 620.832246 1239.64994 1.6645 0.0010334 -0.08142 -5.0548E-05 1.5831 0.00098282 620.8321462404656 62.755 0.79205 56.579 56.283 57.075 -6.1757 118 40 4 0 0 0 0.0062377 4 40496 40363;40496;40624;40751 92.491 30.979 1 99070000 24285 3108 16446 16765 28678;28679;28680;28681 28679 0.039699528490018565 IPYLGSSHYQY 11 Unmodified _IPYLGSSHYQY_ 0 0 0 ENSG00000109101|ENST00000579795|FOXN1 ENSG00000109101|ENST00000579795|FOXN1 ENSG00000109101|ENST00000579795|FOXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.3197021484375 2 664.319502 1326.62445 0.29216 0.00019409 -0.029334 -1.9487E-05 0.26282 0.0001746 664.3198703675283 58.729 0.40359 58.238 58.07 58.474 -0.49079 50 19 3 0 0 0 0.44182 1 32000 32000 19.362 8.5624 1 12552000 24286 2629 16447 16766 28682 28682 -0.025795216734195492 IPYMIKAF 8 Unmodified _IPYMIKAF_ 0 0 0 REV__ENSG00000147145|ENST00000614823|LPAR4 REV__ENSG00000147145|ENST00000614823|LPAR4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7220764160156 2 491.775157 981.53576 0.39436 0.00019394 -0.62013 -0.00030496 -0.22576 -0.00011102 491.7745119520897 49.219 0.23393 49.219 49.062 49.296 0 14 10 2 0 0 0 8.7369 1 27015 27015 20.871 3.7847 1 1647100 + 24287 20871 16448 16767 28683 28683 0.04425391553195368 IPYMIYDSY 9 Oxidation (M) _IPYM(Oxidation (M))IYDSY_ IPYM(1)IYDSY IPYM(40)IYDSY 0 0 1 nc|ENSG00000167695|Q8TBR7-1|TLCD3A;ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A nc|ENSG00000167695|Q8TBR7-1|TLCD3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.7655029296875 2 590.765183 1179.51581 0.080028 4.7278E-05 -0.1143 -6.7524E-05 -0.034272 -2.0246E-05 590.7648298245491 61.613 0.319 61.125 60.944 61.263 -0.48764 29 14 3 0 0 0 0.068777 1 33545 33545 40.449 24.601 1 1778900 24288 7658 16449 16768 28684 28684 1307 -0.06676448968096338 IPYPLEKGHLF 11 Unmodified _IPYPLEKGHLF_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;ENST00000464020.1_1_7:116859112-116863031:+|nuORF;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.5789794921875 3 438.579929 1312.71796 0.55186 0.00024204 -0.73357 -0.00032173 -0.18171 -7.9694E-05 438.5793567642582 60.425 0.22635 60.381 60.269 60.495 -0.04351 19 10 2 0 0 0 0.016495 1 32940 32940 60.899 47.284 1 12620000 24289 289 16450 16769 28685 28685 0.07410822499650749 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2220764160156 3 369.222076 1104.6444 0.80635 0.00029772 -0.66235 -0.00024456 0.14399 5.3165E-05 369.22179821272886 49.556 0.59679 49.507 49.23 49.827 -0.048828 101 29 4 0 0 0 0.06187 2 26844 26741;26844 38.176 29.199 1 45140000 24290 2077 16451 16770 28686;28687 28687 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3287963867188 2 553.329476 1104.6444 0.9493 0.00052528 -1.011 -0.00055941 -0.061692 -3.4136E-05 553.3288034324419 49.567 0.39259 49.518 49.371 49.763 -0.048824 32 19 2 0 0 0 0.042911 2 26758 26758;26870 48.346 29.089 1 5818000 24291 2077 16451 16770 28688;28689 28688 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2223510742188 3 369.222076 1104.6444 1.6018 0.00059141 -0.24241 -8.9504E-05 1.3594 0.00050191 369.22202555526184 54.932 0.54203 49.067 48.799 49.341 -5.8653 91 33 4 0 0 0 0.070838 3 34768 34768;34894;35043 29.841 10.479 1 84239000 24292 2077 16451 16770 28690;28691;28692 28690 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3294067382812 2 553.329476 1104.6444 1.0372 0.00057393 0.13517 7.4794E-05 1.1724 0.00064872 553.329422118911 54.991 0.38529 49.073 48.81 49.196 -5.9186 39 23 2 0 0 0 0.0095811 1 34919 34919 81.613 49.308 1 16903000 24293 2077 16451 16770 28693 28693 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2225341796875 3 369.222076 1104.6444 1.3278 0.00049025 -0.087717 -3.2387E-05 1.2401 0.00045786 369.2220775555823 66.06 0.57742 59.884 59.559 60.137 -6.1757 56 33 2 0 0 0 0.070838 1 42848 42848 29.841 15.435 1 13867000 24294 2077 16451 16770 28694 28694 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.223388671875 3 369.222076 1104.6444 1.1759 0.00043416 -0.0089904 -3.3195E-06 1.1669 0.00043084 369.22210643786536 66.588 1.0429 60.412 59.992 61.035 -6.1757 87 58 2 0 0 0 0.070838 2 43066 43066;43212 29.841 10.479 1 14944000 24295 2077 16451 16770 28695;28696 28695 0.09626318847836046 IPYPRPIHL 9 Unmodified _IPYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.222076 1104.6444 0.80333 0.00029661 -0.63571 -0.00023472 0.16762 6.1889E-05 369.2219581257222 49.904 0.31938 49.512 49.353 49.672 -0.3923 0.0025098 2.238E-05 NaN 38.176 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1914900 24296 2077 16451 16770 0.09626318847836046 IPYQDRESY 9 Unmodified _IPYQDRESY_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MSMS AL20221201_MKP_PDAC_01 4 585.7747802734375 2 585.774928 1169.5353 NaN NaN NaN NaN NaN NaN NaN 32.226 1 28.369 27.869 28.869 -3.8562 0 0 0 0.091025 1 18338 18338 45.7 3.86 1 24297 2169 16452 16771 28697 28697 -0.042683566329287714 IPYRHVHFH 9 Unmodified _IPYRHVHFH_ 0 0 0 REV__ENSG00000172954|ENST00000379509|LCLAT1 REV__ENSG00000172954|ENST00000379509|LCLAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.81201171875 2 603.319974 1204.6254 0.024257 1.4635E-05 -3.8789 -0.0023402 -3.8546 -0.0023256 603.3169580856098 76.991 0.54849 77.041 76.698 77.246 0.05011 50 21 3 0 0 0 0.37804 1 42535 42535 13.508 1.2672 1 13887000 + 24298 22692 16453 16772 28698 28698 0.03126782276785889 IPYSKSHVSM 10 Unmodified _IPYSKSHVSM_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1 ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5302124023438 3 383.53047 1147.56958 1.0087 0.00038687 0.18784 7.2041E-05 1.1965 0.00045891 383.86481334853346 28.261 0.38783 25.113 24.952 25.34 -3.1482 55 20 3 0 0 0 0.47869 1 15783 15783 11.631 2.0874 1 15420000 24299 2533 16454 16773 28699 28699 0.0016976825429537712 IPYSSQYEEAY 11 Unmodified _IPYSSQYEEAY_ 0 0 0 ENSG00000154803|ENST00000285071|FLCN;ENST00000427497.3_1_17:17110364-17131447:-|nuORF ENSG00000154803|ENST00000285071|FLCN ENSG00000154803|ENST00000285071|FLCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.2970581054688 2 675.298433 1348.58231 NaN NaN NaN NaN NaN NaN NaN 45.752 1 45.752 45.252 46.252 0 0 0 0 0.83999 1 24961 24961 10.151 3.0488 1 24300 6350 16455 16774 28700 28700 -0.07803541872431197 IPYSSRNYV 9 Unmodified _IPYSSRNYV_ 0 0 0 REV__nc|ENSG00000101665|O15105-2|SMAD7 REV__nc|ENSG00000101665|O15105-2|SMAD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.282470703125 2 549.782556 1097.55056 0.79217 0.00043552 -2.1513 -0.0011827 -1.3591 -0.00074721 550.2819658479139 57.556 0.47803 57.49 57.277 57.755 -0.066036 61 23 4 0 0 0 0.28023 1 31322 31322 18.146 1.0335 1 5471100 + 24301 18190 16456 16775 28701 28701 0.005685549549070856 IPYTAHALF 9 Unmodified _IPYTAHALF_ 0 0 0 REV__ENSG00000197943|ENST00000564138|PLCG2 REV__ENSG00000197943|ENST00000564138|PLCG2 MSMS AL20221201_MKP_PDAC_01 4 516.7791137695312 2 516.779285 1031.54402 NaN NaN NaN NaN NaN NaN NaN 80.913 1 74.738 74.238 75.238 -6.1757 0 0 0 0.15618 1 53090 53090 36.044 3.7387 1 + 24302 23971 16457 16776 28702 28702 0.02950661794170628 IPYYYYVSN 9 Unmodified _IPYYYYVSN_ 0 0 0 ENST00000497212.1_1_2:231265972-231266179:+|nuORF ENST00000497212.1_1_2:231265972-231266179:+|nuORF ENST00000497212.1_1_2:231265972-231266179:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2799072265625 2 591.279315 1180.54408 0.49028 0.00028989 0.86781 0.00051312 1.3581 0.00080301 591.7813021203041 87.252 0.33797 86.747 86.562 86.9 -0.50423 32 13 3 0 0 0 0.53666 1 47681 47681 5.2307 0.90143 1 1379000 24303 14395 16458 16777 28703 28703 -0.03897382996478882 IQAGRSKRHWY 11 Unmodified _IQAGRSKRHWY_ 0 0 0 ENST00000415807.6_1_3:172046791-172048336:+|nuORF ENST00000415807.6_1_3:172046791-172048336:+|nuORF ENST00000415807.6_1_3:172046791-172048336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 701.37939453125 2 701.378552 1400.74255 0.56808 0.00039844 1.1748 0.00082395 1.7428 0.0012224 701.379614208405 40.528 0.23054 40.533 40.402 40.633 0.0050583 25 10 3 0 0 0 0.5229 1 21605 21605 15.248 3.0078 1 4466400 24304 13025 16459 16778 28704 28704 0.058208954257452206 IQAGRSKRHWY 11 Unmodified _IQAGRSKRHWY_ 0 0 0 ENST00000415807.6_1_3:172046791-172048336:+|nuORF ENST00000415807.6_1_3:172046791-172048336:+|nuORF ENST00000415807.6_1_3:172046791-172048336:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.3810424804688 2 701.378552 1400.74255 0.10445 7.3259E-05 1.5384 0.001079 1.6429 0.0011523 701.3791308378821 46.304 0.24445 41.223 41.115 41.359 -5.0805 18 16 2 0 0 0 0.42108 1 28593 28593 20.415 9.615 1 14980000 24305 13025 16459 16778 28705 28705 0.058208954257452206 IQDKCVPLV 9 Carbamidomethyl (C) _IQDKC(Carbamidomethyl (C))VPLV_ IQDKC(1)VPLV IQDKC(58)VPLV 0 1 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.296630859375 2 536.296985 1070.57942 0.077308 4.146E-05 -0.21189 -0.00011364 -0.13458 -7.2175E-05 536.2968057146643 43.543 0.22514 43.543 43.379 43.605 0 19 10 2 0 0 0 0.025842 1 23659 23659 57.722 12.022 1 9568900 24306 540 16460 16779 28706 28706 37 0.04694956259686478 IQDKCVPLV 9 Carbamidomethyl (C) _IQDKC(Carbamidomethyl (C))VPLV_ IQDKC(1)VPLV IQDKC(62)VPLV 0 1 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.29736328125 2 536.296985 1070.57942 0.54398 0.00029174 -1.1616 -0.00062296 -0.61761 -0.00033122 536.2968523594263 49.025 0.21635 43.629 43.556 43.773 -5.3961 26 14 3 0 0 0 0.021948 1 30576 30576 61.602 6.0992 1 35784000 24307 540 16460 16779 28707 28707 37 0.04694956259686478 IQDPLCDELC 10 Unmodified _IQDPLCDELC_ 0 0 0 nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET nc|ENSG00000165731|P07949-2|RET nc|ENSG00000165731|P07949-2|RET MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5030822753906 3 383.503592 1147.48895 0.58812 0.00022554 0.20322 7.7937E-05 0.79134 0.00030348 383.50363124988854 12.273 0.4239 9.7914 9.6817 10.106 -2.482 303 160 3 0 0 0 0.71123 1 6214 6214 0.69767 0 1 9891300 24308 7382 16461 16780 28708 28708 -0.0788988085089386 IQEEFYRV 8 Unmodified _IQEEFYRV_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2784423828125 2 542.277106 1082.53966 0.26653 0.00014453 -0.69043 -0.00037441 -0.4239 -0.00022987 542.2770869510139 56.79 0.63748 56.79 56.45 57.087 0 91 27 5 0 0 0 0.78849 1 31472 31472 9.3474 0 1 45025000 24309 1177 16462 16781 28709 28709 0.0016915258061089844 IQENMPVYI 9 Unmodified _IQENMPVYI_ 0 0 0 REV__ENSG00000114455|ENST00000467761|HHLA2 REV__ENSG00000114455|ENST00000467761|HHLA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.7962036132812 2 553.781167 1105.54778 0.62487 0.00034604 -2.8722 -0.0015906 -2.2473 -0.0012445 553.7793567906214 67.901 0.30469 61.725 61.567 61.871 -6.1757 21 17 2 0 0 0 0.20727 1 44324 44324 7.9102 0 1 28468000 + 24310 18915 16463 16782 28710 28710 -0.000770364942809465 IQFFDVDNN 9 Unmodified _IQFFDVDNN_ 0 0 0 ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2550048828125 2 556.256371 1110.49819 0.1904 0.00010591 1.2543 0.00069773 1.4447 0.00080364 556.2563152079643 70.604 0.32948 70.604 70.377 70.707 0 24 13 3 0 0 0 0.331 1 39350 39350 16.149 3.1066 1 1021500 24311 10756 16464 16783 28711 28711 -0.05264028178703484 IQGDRGDMIT 10 Unmodified _IQGDRGDMIT_ 0 0 0 ENSG00000130881|ENST00000253193|LRP3 ENSG00000130881|ENST00000253193|LRP3 ENSG00000130881|ENST00000253193|LRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7693481445312 2 553.268955 1104.52336 -0.40109 -0.00022191 -1.7951 -0.00099318 -2.1962 -0.0012151 553.2677924138776 18.806 0.13142 18.829 18.795 18.926 0.023106 23 14 2 0 0 0 0.6785 1 9457 9457 5.2969 0.39987 1 534240 24312 4274 16465 16784 28712 28712 -0.02472296647783878 IQGHTMSGMDL 11 Unmodified _IQGHTMSGMDL_ 0 0 0 ENST00000413436.5_1_2:70278436-70314922:-|nuORF;ENST00000439670.6_1_2:70283041-70313407:-|nuORF;ENST00000423402.5_1_2:70310792-70314961:-|nuORF;ENST00000596028.5_1_2:70310792-70315777:-|nuORF;ENST00000457076.5_1_2:70278401-70314348:-|nuORF ENST00000413436.5_1_2:70278436-70314922:-|nuORF ENST00000413436.5_1_2:70278436-70314922:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.18359375 3 397.182853 1188.52673 -0.29996 -0.00011914 0.8167 0.00032438 0.51674 0.00020524 397.1831661644112 51.958 0.3019 51.958 51.777 52.079 0 29 13 3 0 0 0 0.50515 1 28698 28698 17.049 6.7333 1 8793100 24313 12999 16466 16785 28713 28713 -0.05999369865412518 IQGQDDKVYI 10 Unmodified _IQGQDDKVYI_ 0 0 0 ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF ENSG00000118420|ENST00000369747|UBE3D ENSG00000118420|ENST00000369747|UBE3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8748779296875 3 393.539911 1177.5979 -0.036527 -1.4375E-05 1.2286 0.0004835 1.1921 0.00046912 393.5403558108245 18.64 0.12113 18.646 18.606 18.728 0.0060463 14 5 3 0 0 0 0.5802 1 9459 9459 12.175 1.2758 1 2255800 24314 3370 16467 16786 28714 28714 0.016207894352419316 IQHALQEI 8 Unmodified _IQHALQEI_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2673034667969 2 476.266542 950.51853 3.4382 0.0016375 -0.75026 -0.00035732 2.688 0.0012802 476.26621659105615 98.009 0.28244 97.991 97.817 98.099 -0.018188 24 9 3 0 0 0 0.68937 1 54448 54448 18.146 1.2041 1 3113100 + 24315 17831 16468 16787 28715 28715 0.04129187271757928 IQHDLIFS 8 Unmodified _IQHDLIFS_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7625122070312 2 486.761092 971.507631 0.6294 0.00030637 0.86852 0.00042276 1.4979 0.00072913 486.7612516155987 67.684 0.58139 61.509 61.255 61.837 -6.1757 94 33 4 0 0 0 0.50364 1 43986 43986 34.402 0.29928 1 137440000 24316 1860 16469 16788 28716 28716 0.020737848974818007 IQHDLIFSL 9 Unmodified _IQHDLIFSL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.30322265625 2 543.303124 1084.5917 0.21376 0.00011614 0.68327 0.00037123 0.89704 0.00048736 543.3033542147733 76.446 0.22591 76.446 76.315 76.541 0 12 8 2 0 0 0 0.47846 1 42531 42531 8.7454 2.5396 1 256810 24317 1860 16470 16789 28717 28717 0.05278315994382865 IQHDLIFSL 9 Unmodified _IQHDLIFSL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3029174804688 2 543.303124 1084.5917 0.16669 9.0562E-05 -0.50299 -0.00027328 -0.33631 -0.00018272 543.3028472521449 76.264 0.28486 76.312 76.16 76.445 0.047943 22 11 2 0 0 0 0.011671 1 42077 42077 75.761 3.8386 1 6460100 24318 1860 16470 16789 28718 28718 0.05278315994382865 IQHDLIFSL 9 Unmodified _IQHDLIFSL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3059692382812 2 543.303124 1084.5917 1.2498 0.00067903 0.73488 0.00039926 1.9847 0.0010783 543.3036649672313 95.801 0.54193 89.626 89.351 89.893 -6.1757 75 33 3 0 0 0 0.07087 1 63569 63569 39.95 5.548 1 38914000 24319 1860 16470 16789 28719 28719 0.05278315994382865 IQHDLIFSL 9 Unmodified _IQHDLIFSL_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.303124 1084.5917 -0.36682 -0.0001993 1.7326 0.00094133 1.3658 0.00074203 543.303857896787 76.818 0.37076 76.338 76.149 76.52 -0.47945 -0.027159 0.0010744 NaN 75.761 53 17 4 NaN NaN NaN NaN 0 NaN NaN 0 6971800 24320 1860 16470 16789 0.05278315994382865 IQHQRLHSF 9 Unmodified _IQHQRLHSF_ 0 0 0 REV__ENST00000425869.1_22:16634899-16650863:+|nuORF REV__ENST00000425869.1_22:16634899-16650863:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.54833984375 3 389.212351 1164.61522 -0.024641 -9.5906E-06 2.3735 0.00092379 2.3489 0.0009142 389.54759471926246 53.251 0.20027 53.187 53.061 53.262 -0.063423 15 9 2 0 0 0 0.41742 1 28883 28883 7.609 4.0219 1 1545600 + 24321 26901 16471 16790 28720 28720 0.039501745515508446 IQHYSNHV 8 Unmodified _IQHYSNHV_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2465515136719 2 499.246141 996.477728 -0.21055 -0.00010511 0.47333 0.00023631 0.26279 0.00013119 499.2462751282243 37.663 0.54215 37.391 37.157 37.699 -0.27133 70 24 4 0 0 0 0.64853 1 19928 19928 21.747 3.6117 1 16993000 24322 6563 16472 16791 28721 28721 -0.02065154047852502 IQKHSAERVN 10 Unmodified _IQKHSAERVN_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.8251953125 2 591.322911 1180.63127 -0.53385 -0.00031568 0.30396 0.00017974 -0.22989 -0.00013594 591.3230398514944 17.92 0.17194 17.92 17.853 18.025 0 45 25 2 0 0 0 0.69917 1 8856 8856 2.9952 0.49676 1 1978800 + 24323 17601;19809 16473 16792 28722 28722 0.04817835997801012 IQLADTPKEI 10 Unmodified _IQLADTPKEI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3192749023438 2 564.318971 1126.62339 1.2936 0.00073001 -1.0573 -0.00059663 0.23636 0.00013338 564.3183102115032 19.971 0.28072 17.314 17.174 17.455 -2.6564 33 15 3 0 0 0 0.5802 1 10610 10610 9.3831 0 1 4028400 + 24324 21279 16474 16793 28723 28723 0.0651426395766066 IQLGYYKHL 9 Unmodified _IQLGYYKHL_ 0 0 0 REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.88037109375 3 378.88172 1133.62333 -0.49574 -0.00018783 -2.1373 -0.00080979 -2.6331 -0.00099762 379.2154863465817 19.445 0.079544 19.445 19.372 19.452 0 7 4 2 0 0 0 0.57757 1 9720 9720 2.7352 0.23671 1 645740 + 24325 26935 16475 16794 28724 28724 0.06186308748328884 IQLINGFM 8 Unmodified _IQLINGFM_ 0 0 0 REV__ENST00000481195.5_1_5:133536728-133537609:-|nuORF REV__ENST00000481195.5_1_5:133536728-133537609:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2563171386719 2 468.254588 934.494624 NaN NaN NaN NaN NaN NaN NaN 18.426 1 18.432 17.932 18.932 0.0060463 0 0 0 0.97444 1 9338 9338 0.69038 0 1 + 24326 27688 16476 16795 28725 28725 0.02475630513742999 IQLKGRVPGP 10 Unmodified _IQLKGRVPGP_ 0 0 0 REV__nc|ENSG00000182177|Q6ZVZ8-2|ASB18 REV__nc|ENSG00000182177|Q6ZVZ8-2|ASB18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.832763671875 2 532.832383 1063.65021 -0.033958 -1.8094E-05 1.0966 0.00058429 1.0626 0.0005662 532.8330028642473 30.102 0.33419 30.132 29.921 30.255 0.030106 22 13 2 0 0 0 0.2178 1 15716 15716 32.305 3.2239 1 1702600 + 24327 29830 16477 16796 28726 28726 0.1209341735950602 IQLTQMSLQL 10 Unmodified _IQLTQMSLQL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8284301757812 2 587.828649 1173.64274 -0.12088 -7.1058E-05 0.068683 4.0374E-05 -0.052198 -3.0684E-05 587.8291905466446 69.554 0.34838 69.075 68.874 69.223 -0.47903 55 14 5 0 0 0 0.0030316 1 37968 37968 110.67 14.564 1 7439700 24328 9652 16478 16797 28727 28727 0.06286896976916978 IQLTQMSLQL 10 Unmodified _IQLTQMSLQL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.828649 1173.64274 0.71276 0.00041898 0.64251 0.00037769 1.3553 0.00079667 588.3309004922663 69.006 0.36125 69.037 68.846 69.207 0.030914 -0.019175 0.00053511 NaN 110.67 45 17 4 NaN NaN NaN NaN 0 NaN NaN 0 13650000 24329 9652 16478 16797 0.06286896976916978 IQLVPEQWL 9 Unmodified _IQLVPEQWL_ 0 0 0 REV__ENST00000524591.6_1_8:12878711-12878915:+|nuORF REV__ENST00000524591.6_1_8:12878711-12878915:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3184814453125 2 563.318774 1124.623 1.0093 0.00056855 0.60798 0.00034248 1.6173 0.00091103 563.3193910808324 100.53 0.28976 94.358 94.141 94.431 -6.1757 26 18 2 0 0 0 0.07087 1 67220 67220 39.95 3.8227 1 162020000 + 24330 28332 16479 16798 28728 28728 0.06566889028476908 IQMIMIMNGT 10 Unmodified _IQMIMIMNGT_ 0 0 0 ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A ENSG00000092421|ENST00000343348|SEMA6A ENSG00000092421|ENST00000343348|SEMA6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5250244140625 3 384.525562 1150.55486 1.5463 0.00059459 -2.3677 -0.00091042 -0.82135 -0.00031583 384.5245712795411 20.257 0.2891 17.564 17.434 17.723 -2.693 35 20 3 0 0 0 0.67413 1 10783 10783 5.7834 3.0482 1 3160600 24331 1615 16480 16799 28729 28729 -0.01439763209737066 IQMRMDRL 8 Unmodified _IQMRMDRL_ 0 0 0 REV__ENSG00000150676|ENST00000342404|CCDC83 REV__ENSG00000150676|ENST00000342404|CCDC83 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7802734375 2 531.780979 1061.5474 NaN NaN NaN NaN NaN NaN NaN 88.725 1 88.725 88.225 89.225 0 0 0 0 0.97444 1 49104 49104 2.8892 0 1 + 24332 21033 16481 16800 28730 28730 0.01909265304902874 IQNGCKCFAF 10 Unmodified _IQNGCKCFAF_ 0 0 0 ENSG00000163239|ENST00000368482|TDRD10;nc|ENSG00000163239|Q5VZ19|TDRD10 ENSG00000163239|ENST00000368482|TDRD10 ENSG00000163239|ENST00000368482|TDRD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5097045898438 3 377.5089 1129.50487 0.48341 0.00018249 2.8567 0.0010784 3.3401 0.0012609 377.5098389760584 60.417 0.23493 60.417 60.279 60.514 0 13 10 2 0 0 0 0.69064 1 33703 33703 1.9064 0 1 1234900 24333 6969 16482 16801 28731 28731 -0.054701298233567286 IQNNKGTL 8 Unmodified _IQNNKGTL_ 0 0 0 REV__nc|ENSG00000100629|Q6ZU80-1|CEP128 REV__nc|ENSG00000100629|Q6ZU80-1|CEP128 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2507019042969 2 444.250892 886.48723 -0.22511 -0.0001 0.095179 4.2283E-05 -0.12993 -5.772E-05 444.2508237525496 19.583 0.5815 19.583 19.282 19.864 0 177 69 3 0 0 0 0.25522 1 9788 9788 61.357 2.6787 1 4936600 + 24334 18096 16483 16802 28732 28732 0.03944614237661881 IQPYEHVI 8 Unmodified _IQPYEHVI_ 0 0 0 ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7677917480469 2 499.768917 997.523281 0.41404 0.00020692 -0.46367 -0.00023173 -0.049626 -2.4802E-05 499.7685796541993 72.32 0.20756 71.844 71.73 71.938 -0.47609 13 9 2 0 0 0 0.6895 1 39600 39600 18.135 0 1 961940 24335 7292 16484 16803 28733 28733 0.024420714145321654 IQPYEHVI 8 Unmodified _IQPYEHVI_ 0 0 0 ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF ENSG00000165105|ENST00000376447|RASEF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.768917 997.523281 0.19556 9.7735E-05 1.3725 0.00068593 1.5681 0.00078367 499.7698131755815 71.916 0.14701 71.916 71.861 72.008 0 0.035683 0.0011929 NaN 18.135 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 842420 24336 7292 16484 16803 0.024420714145321654 IQQEILVL 8 Unmodified _IQQEILVL_ 0 0 0 ENSG00000112115|ENST00000648244|IL17A ENSG00000112115|ENST00000648244|IL17A ENSG00000112115|ENST00000648244|IL17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2950744628906 2 478.294768 954.574983 -0.19746 -9.4444E-05 0.69663 0.00033319 0.49917 0.00023875 478.2953353432729 53.498 0.17332 53.435 53.326 53.499 -0.063423 11 8 2 0 0 0 0.56356 1 29014 29014 29.082 2.8134 1 2041300 24337 2859 16485 16804 28734 28734 0.09587815108409359 IQQMLPDKSI 10 Unmodified _IQQMLPDKSI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5503845214844 3 391.549641 1171.62709 1.3091 0.00051256 0.97351 0.00038118 2.2826 0.00089374 391.5496952214835 21.842 0.45227 19.107 18.882 19.335 -2.7348 42 24 2 0 0 0 0.65282 1 11792 11792 4.7159 0 1 2488800 24338 1541 16486 16805 28735 28735 0.04814610459857249 IQQTMLEL 8 Unmodified _IQQTMLEL_ 0 0 0 ENST00000405257.1_1_6:4703010-4703685:+|nuORF ENST00000405257.1_1_6:4703010-4703685:+|nuORF ENST00000405257.1_1_6:4703010-4703685:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2626037597656 2 488.26261 974.510668 0.99984 0.00048819 2.1611 0.0010552 3.1609 0.0015433 488.2642479131204 42.81 0.51236 38.126 37.764 38.277 -4.6846 51 33 2 0 0 0 0.40602 1 25870 25870 43.858 1.7637 1 8391600 24339 12920 16487 16806 28736 28736 0.022392919599496963 IQRDAATI 8 Unmodified _IQRDAATI_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2505493164062 2 444.250892 886.48723 -0.22511 -0.0001 0.095179 4.2283E-05 -0.12993 -5.772E-05 444.2508237525496 19.583 0.5815 19.583 19.282 19.864 0 177 69 3 0 0 0 0.63706 1 9688 9688 22.736 0.98964 1 4936600 24340 9907 16488 16807 28737 28737 0.03944614237661881 IQRDAATI 8 Unmodified _IQRDAATI_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.252197265625 2 444.250892 886.48723 1.3457 0.00059783 -0.51177 -0.00022735 0.83393 0.00037047 444.2506055048792 21.468 0.36438 18.733 18.611 18.976 -2.7348 69 31 3 0 0 0 0.27285 1 11491 11491 58.679 3.9053 1 6290800 24341 9907 16488 16807 28738 28738 0.03944614237661881 IQRLYGCFLR 10 Unmodified _IQRLYGCFLR_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8499755859375 2 634.85025 1267.68595 NaN NaN NaN NaN NaN NaN NaN 69.358 1 69.389 68.889 69.889 0.030914 0 0 0 0.76313 1 38121 38121 13.906 0.86358 1 24342 8579 16489 16808 28739 28739 0.06281131544847085 IQRQFEDLN 9 Unmodified _IQRQFEDLN_ 0 0 0 ENSG00000128266|ENST00000615612|GNAZ ENSG00000128266|ENST00000615612|GNAZ ENSG00000128266|ENST00000615612|GNAZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8031616210938 2 581.796195 1161.57784 1.0326 0.00060079 -3.3833 -0.0019684 -2.3506 -0.0013676 581.7956911939807 58.666 0.51387 58.605 58.47 58.984 -0.060722 41 25 3 0 0 0 0.55144 1 32096 32096 4.3292 0.38484 1 3101400 24343 4053 16490 16809 28740 28740 0.0035103849527331477 IQRTHRETF 9 Unmodified _IQRTHRETF_ 0 0 0 ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7 ENSG00000165891|ENST00000322886|E2F7 ENSG00000165891|ENST00000322886|E2F7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5135192871094 3 396.547511 1186.6207 -0.64834 -0.0002571 -2.4643 -0.0009772 -3.1126 -0.0012343 396.54647046552594 15.48 0.070771 15.48 15.456 15.527 0 23 18 2 0 0 0 0.21906 1 7449 7449 0.23584 0.076522 1 370380 24344 7400 16491 16810 28741 28741 0.034858533433634875 IQRTPKIQV 9 Unmodified _IQRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5608825683594 3 361.560869 1081.66078 -0.056936 -2.0586E-05 -0.05845 -2.1133E-05 -0.11539 -4.1719E-05 361.56082379400675 29.458 1.8548 29.488 29.319 31.174 0.030104 175 82 3 0 0 0 0.014417 6 15427 15322;15427;15541;15645;15743;15860 63.227 37.207 1 163760000 24345 7522 16492 16811 28742;28743;28744;28745;28746;28747 28743 0.1232140001393418 IQRTPKIQV 9 Unmodified _IQRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8356323242188 2 541.837665 1081.66078 0.029247 1.5847E-05 -1.2514 -0.00067807 -1.2222 -0.00066222 541.8371048898903 29.454 0.24809 29.484 29.341 29.589 0.030106 26 12 3 0 0 0 0.011291 1 15359 15359 76.825 15.467 1 13539000 24346 7522 16492 16811 28748 28748 0.1232140001393418 IQRTPKIQV 9 Unmodified _IQRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.56103515625 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 30.724 1 30.754 30.254 31.254 0.030106 0 0 0 0.43483 1 16073 16073 22.658 6.509 1 24347 7522 16492 16811 28749 28749 0.1232140001393418 IQRTPKIQV 9 Unmodified _IQRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.560869 1081.66078 -0.34938 -0.00012632 2.3408 0.00084632 1.9914 0.00072 361.56206250709243 29.435 0.06069 29.435 29.391 29.451 0 -0.053344 0.0025177 NaN 63.227 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 372830 24348 7522 16492 16811 0.1232140001393418 IQRTPKIQV 9 Unmodified _IQRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 361.560869 1081.66078 0.62041 0.00022432 0.27504 9.9443E-05 0.89544 0.00032376 361.56087797557205 29.622 0.14073 29.542 29.46 29.601 -0.080431 0.053374 0.00027703 NaN 63.227 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2215300 24349 7522 16492 16811 0.1232140001393418 IQRTPKIQVY 10 Unmodified _IQRTPKIQVY_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.915283203125 3 415.915312 1244.72411 -0.066407 -2.7619E-05 -0.6863 -0.00028544 -0.75271 -0.00031306 415.91521307023305 33.481 0.49742 33.51 33.361 33.859 0.028934 46 21 3 0 0 0 0.52659 1 17608 17608 14.957 10.241 1 8842700 24350 7522 16493 16812 28750 28750 0.11153340731175376 IQRTPKIQVY 10 Unmodified _IQRTPKIQVY_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 415.915312 1244.72411 -0.25049 -0.00010418 1.0598 0.00044077 0.80926 0.00033658 416.2498410866942 33.701 0.21564 33.542 33.459 33.675 -0.15918 0.015936 0.0017691 NaN 14.957 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 765870 24351 7522 16493 16812 0.11153340731175376 IQRTPKIQVYS 11 Unmodified _IQRTPKIQVYS_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MSMS AL20221201_MKP_PDAC_01 4 444.9267883300781 3 444.925988 1331.75613 NaN NaN NaN NaN NaN NaN NaN 35.459 1 31.266 30.766 31.766 -4.1928 0 0 0 0.48432 1 20571 20571 25.155 18.532 1 24352 7522 16494 16813 28751 28751 0.10352708414325207 IQRVLPVVLSP 11 Unmodified _IQRVLPVVLSP_ 0 0 0 ENST00000359520.11_1_14:102843003-102843273:+|nuORF ENST00000359520.11_1_14:102843003-102843273:+|nuORF ENST00000359520.11_1_14:102843003-102843273:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.890380859375 2 610.889898 1219.76524 1.5128 0.00092414 0.062317 3.8069E-05 1.5751 0.00096221 610.8897435017446 105.98 1.1324 99.802 99.547 100.68 -6.1757 488 179 3 0 0 0 0.7326 5 70925 70925;71028;71131;71348;71461 1.1933 0.79263 1 14405000 24353 12147 16495 16814 28752;28753;28754;28755;28756 28752 0.16415101770667206 IQSKKKVHK 9 Unmodified _IQSKKKVHK_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.5275573730469 3 365.904747 1094.69241 1.7953 0.0006569 -0.19269 -7.0506E-05 1.6026 0.0005864 365.90455639848653 30.553 0.14028 27.056 26.992 27.132 -3.497 9 6 2 0 0 0 0.21185 1 17238 17238 1.9064 0.9441 1 16411000 24354 9726 16496 16815 28757 28757 0.14885392767882877 IQTEEMYWKYE 11 Unmodified _IQTEEMYWKYE_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 760.3427124023438 2 760.342317 1518.67008 -0.005682 -4.3202E-06 1.4308 0.0010879 1.4251 0.0010835 760.3433271439233 88.255 0.23494 88.255 88.163 88.398 0 21 11 2 0 0 0 0.74452 1 48812 48812 0.26902 0.26902 1 470290 24355 7301 16497 16816 28758 28758 -0.068506642733837 IQTSHCEVF 9 Unmodified _IQTSHCEVF_ 0 0 0 ENSG00000143373|ENST00000336715|ZNF687;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENST00000459919.1_1_1:151260729-151261748:+|nuORF ENSG00000143373|ENST00000336715|ZNF687 ENSG00000143373|ENST00000336715|ZNF687 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2471923828125 2 532.247492 1062.48043 0.33042 0.00017587 -0.45674 -0.0002431 -0.12632 -6.7232E-05 532.2471045599392 65.818 0.33473 65.818 65.624 65.959 0 41 16 3 0 0 0 0.12424 1 36683 36683 30.637 10.183 1 8181200 24356 5499 16498 16817 28759 28759 -0.048310667052192 IQTVTTFCL 9 Unmodified _IQTVTTFCL_ 0 0 0 ENST00000519948.3_1_12:74933255-74933441:+|nuORF ENST00000519948.3_1_12:74933255-74933441:+|nuORF ENST00000519948.3_1_12:74933255-74933441:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.27197265625 2 513.270435 1024.52632 0.93378 0.00047928 0.41737 0.00021422 1.3511 0.0006935 513.2707787161181 61.608 0.62011 55.432 55.269 55.89 -6.1757 43 32 2 0 0 0 0.23158 1 39956 39956 20.454 1.1966 1 28447000 24357 14719 16499 16818 28760 28760 0.015035784770134342 IQVDGVYSI 9 Unmodified _IQVDGVYSI_ 0 0 0 REV__ENSG00000139641|ENST00000394048|ESYT1 REV__ENSG00000139641|ENST00000394048|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7648620605469 2 497.266207 992.517862 0.11935 5.9349E-05 0.38559 0.00019174 0.50494 0.00025109 497.26656702106226 69.098 0.95648 68.617 67.967 68.923 -0.48071 79 42 3 0 0 0 0.2001 1 37899 37899 23.148 9.6405 1 36189000 + 24358 20424 16500 16819 28761 28761 0.02130347832053303 IQVLMGSLVY 10 Unmodified _IQVLMGSLVY_ 0 0 0 ENSG00000153561|ENST00000283632|RMND5A ENSG00000153561|ENST00000283632|RMND5A ENSG00000153561|ENST00000283632|RMND5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8151245117188 2 561.81501 1121.61547 1.3862 0.00077877 -0.99638 -0.00055978 0.3898 0.00021899 561.8143885879616 63.813 0.82346 57.637 57.094 57.918 -6.1757 110 46 4 0 0 0 0.46077 1 41376 41376 18.373 1.4308 1 44785000 24359 6268 16501 16820 28762 28762 0.05952413436534698 IQWKTRQL 8 Unmodified _IQWKTRQL_ 0 0 0 ENSG00000120254|ENST00000367321|MTHFD1L;nc|ENSG00000120254|Q6UB35-2|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2132568359375 3 358.213581 1071.61891 NaN NaN NaN NaN NaN NaN NaN 34.689 1 34.717 34.217 35.217 0.027401 0 0 0 0.97444 1 18300 18300 3.5965 0 1 24360 3502 16502 16821 28763 28763 0.08596844325415987 IQYVKEPF 8 Unmodified _IQYVKEPF_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2788696289062 2 512.279118 1022.54368 1.0331 0.00052921 -0.17376 -8.9015E-05 0.85929 0.0004402 512.2789720711002 89.416 0.39597 83.24 83.022 83.418 -6.1757 38 21 2 0 0 0 0.24723 1 59084 59084 62.573 10.943 1 12480000 + 24361 22004 16503 16822 28764 28764 0.03331242074330021 IRAGKTGH 8 Unmodified _IRAGKTGH_ 0 0 0 ENST00000533173.1_1_8:145676645-145677062:-|nuORF ENST00000533173.1_1_8:145676645-145677062:-|nuORF ENST00000533173.1_1_8:145676645-145677062:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 420.2442626953125 2 420.245944 838.477334 NaN NaN NaN NaN NaN NaN NaN 44.455 1 39.603 39.103 40.103 -4.852 0 0 0 0.97444 1 27146 27146 4.3292 1.44 1 24362 14935 16504 16823 28765 28765 0.05163471022933663 IRARHPFLQ 9 Unmodified _IRARHPFLQ_ 0 0 0 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8919067382812 3 379.892842 1136.6567 0.63233 0.00024022 -2.1555 -0.00081884 -1.5231 -0.00057862 379.8920328809294 14.842 0.10561 12.315 12.228 12.333 -2.5273 23 17 2 0 0 0 0.54213 1 7551 7551 4.897 0 1 1004600 + 24363 20790 16505 16824 28766 28766 0.09383355310887964 IRATAFLETL 10 Unmodified _IRATAFLETL_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172;ENST00000489492.1_1_2:27688276-27688770:-|nuORF ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8306274414062 2 567.829506 1133.64446 0.47235 0.00026821 0.82357 0.00046765 1.2959 0.00073586 567.8294968199174 66.937 0.27596 66.454 66.314 66.59 -0.48323 28 12 3 0 0 0 0.54083 1 36554 36554 11.495 6.5977 1 992120 24364 5001 16506 16825 28767 28767 0.0829827405721062 IRAYDILFGD 10 Unmodified _IRAYDILFGD_ 0 0 0 nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.8119506835938 2 591.811313 1181.60807 0.088571 5.2417E-05 0.68482 0.00040528 0.77339 0.0004577 591.8116337007457 69.257 0.44147 68.777 68.506 68.948 -0.48071 58 18 4 0 0 0 0.32072 1 37896 37896 26.268 0 1 21717000 24365 611 16507 16826 28768 28768 0.024533971604796534 IRDLNSDTWF 10 Unmodified _IRDLNSDTWF_ 0 0 0 REV__nc|ENSG00000116962|P14543-2|NID1 REV__nc|ENSG00000116962|P14543-2|NID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.8761901855469 3 422.875293 1265.60405 1.3943 0.00058962 -1.0319 -0.00043636 0.36242 0.00015326 422.87520538896644 20.188 0.4688 17.509 17.347 17.816 -2.6786 61 30 3 0 0 0 0.70734 1 10684 10684 2.086 0.17963 1 8425200 + 24366 19075 16508 16827 28769 28769 -0.018126923332374645 IRDNFVIIY 9 Unmodified _IRDNFVIIY_ 0 0 0 ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 ENSG00000072958|ENST00000291439|AP1M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8236083984375 2 576.824224 1151.63389 0.67352 0.0003885 -0.51819 -0.00029891 0.15532 8.9593E-05 576.823929170203 64.029 0.23756 63.544 63.458 63.696 -0.48512 25 11 3 0 0 0 0.40476 1 34939 34939 12.241 0 1 2224600 24367 1097 16509 16828 28770 28770 0.06414291402757044 IRDNFVIVY 9 Unmodified _IRDNFVIVY_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8165893554688 2 569.816399 1137.61824 0.73019 0.00041607 -0.95077 -0.00054177 -0.22059 -0.00012569 569.8158386816921 64.044 0.2981 63.559 63.398 63.696 -0.48512 33 15 3 0 0 0 0.34134 1 34945 34945 15.248 3.6082 1 3017000 24368 4133 16510 16829 28771 28771 0.05494004885713366 IRDWKVNL 8 Unmodified _IRDWKVNL_ 0 0 0 REV__ENST00000532074.5_1_1:155984857-155990687:-|nuORF REV__ENST00000532074.5_1_1:155984857-155990687:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3018188476562 2 522.303458 1042.59236 NaN NaN NaN NaN NaN NaN NaN 26.935 1 23.898 23.398 24.398 -3.0365 0 0 0 0.60022 1 14887 14887 34.102 1.797 1 + 24369 21768 16511 16830 28772 28772 0.07277155434076121 IRDYLCERV 9 Unmodified _IRDYLCERV_ 0 0 0 REV__nc|ENSG00000162373|Q7L4P6-2|BEND5 REV__nc|ENSG00000162373|Q7L4P6-2|BEND5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5361633300781 3 389.537736 1165.59138 NaN NaN NaN NaN NaN NaN NaN 17.446 1 17.446 16.946 17.946 0 0 0 0 0.85798 1 8596 8596 0.23584 0 1 + 24370 21636 16512 16831 28773 28773 0.015205730028355902 IRECAILYR 9 Unmodified _IRECAILYR_ 0 0 0 REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5455932617188 3 379.546343 1135.6172 0.51824 0.0001967 -0.89549 -0.00033988 -0.37725 -0.00014318 379.5465015713486 36.689 0.38697 36.689 36.409 36.796 0 35 18 3 0 0 0 0.36964 1 19498 19498 9.544 0 1 5688100 + 24371 22842 16513 16832 28774 28774 0.054814672451584556 IRECAILYR 9 Unmodified _IRECAILYR_ 0 0 0 REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5472717285156 3 379.546343 1135.6172 -0.30976 -0.00011757 -1.554 -0.00058983 -1.8638 -0.0007074 379.5455891870084 36.913 0.35783 36.664 36.51 36.867 -0.2497 41 15 4 0 0 0 0.12424 1 19352 19352 22.658 5.2154 1 16661000 + 24372 22842 16513 16832 28775 28775 0.054814672451584556 IREDNSSNFR 10 Unmodified _IREDNSSNFR_ 0 0 0 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3574829101562 2 619.299633 1236.58471 1.2002 0.00074329 0.0034823 2.1566E-06 1.2037 0.00074545 619.7995396971504 63.865 0.11732 63.854 63.783 63.9 -0.010532 7 5 2 0 0 0 0.23558 1 34969 34969 8.1555 2.4237 1 1165600 + 24373 17710 16514 16833 28776 28776 -0.024116486241382518 IREFYAEI 8 Unmodified _IREFYAEI_ 0 0 0 REV__ENSG00000156006|ENST00000286479|NAT2 REV__ENSG00000156006|ENST00000286479|NAT2 MSMS AL20221201_MKP_PDAC_01 4 521.2330322265625 2 520.7742 1039.53385 NaN NaN NaN NaN NaN NaN NaN 50.758 1 45.109 44.609 45.609 -5.649 0 0 0 0.68135 1 31882 31882 29.082 8.628 1 + 24374 21304 16515 16834 28777 28777 0.01566054068939593 IREQDEMNI 9 Unmodified _IREQDEMNI_ 0 0 0 REV__ENSG00000171223|ENST00000302754|JUNB REV__ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1848449707031 3 383.185251 1146.53392 0.56249 0.00021554 -0.75484 -0.00028924 -0.19235 -7.3705E-05 383.18475654097546 36.589 0.24506 36.589 36.487 36.732 0 22 11 3 0 0 0 0.10247 1 19420 19420 24.882 7.0184 1 2871700 + 24375 22546 16516 16835 28778 28778 -0.033483139933423445 IREQEEKMRRQ 11 Unmodified _IREQEEKMRRQ_ 0 0 0 ENST00000567652.1_3_15:28798864-28806522:+|nuORF;nc|ENSG00000227717|P0DX01|GOLGA6L25;nc|ENSG00000237850|P0DX00|GOLGA6L24;nc|ENSG00000273756|P0DX02|GOLGA6L26;ENSG00000273976|ENST00000614055|GOLGA6L1;ENSG00000277322|ENST00000619213|GOLGA6L6;ENSG00000277865|ENST00000622895|GOLGA6L22 ENST00000567652.1_3_15:28798864-28806522:+|nuORF ENST00000567652.1_3_15:28798864-28806522:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.5993957519531 3 501.600058 1501.77834 -0.11606 -5.8216E-05 -0.15974 -8.0127E-05 -0.2758 -0.00013834 501.93454676359784 32.585 0.28357 32.615 32.414 32.698 0.029747 21 10 3 0 0 0 0.70957 1 17100 17100 3.3557 1.103 1 3294200 24376 15443 16517 16836 28779 28779 0.047525648204100435 IRERWFQNYGV 11 Unmodified _IRERWFQNYGV_ 0 0 0 ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENST00000489749.1_1_2:7018228-7023923:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 734.378173828125 2 734.378217 1466.74188 0.49821 0.00036587 -1.3795 -0.0010131 -0.88133 -0.00064723 734.3772929131692 47.177 0.23446 46.824 46.704 46.938 -0.3526 28 11 3 0 0 0 0.68427 1 25257 25257 5.7319 0.43497 1 9077100 24377 14245 16518 16837 28780 28780 0.027180559860426 IRERWFQNYGV 11 Unmodified _IRERWFQNYGV_ 0 0 0 ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENST00000489749.1_1_2:7018228-7023923:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 734.378217 1466.74188 0.021466 1.5764E-05 -2.3526 -0.0017277 -2.3311 -0.0017119 734.3767125141425 46.79 0.099174 46.79 46.74 46.839 0 -0.017139 -0.0013086 NaN 5.7319 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1256900 24378 14245 16518 16837 0.027180559860426 IRESWLERI 9 Unmodified _IRESWLERI_ 0 0 0 REV__ENST00000355899.7_1_X:114884286-114884331:+|nuORF REV__ENST00000355899.7_1_X:114884286-114884331:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.2290649414062 3 401.227779 1200.66151 NaN NaN NaN NaN NaN NaN NaN 25.037 1 22.154 21.654 22.654 -2.8831 0 0 0 0.7453 1 13672 13672 4.897 0 1 + 24379 25818 16519 16838 28781 28781 0.06920194663007351 IREVTINQSL 10 Unmodified _IREVTINQSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8361206054688 2 586.83532 1171.65609 0.59514 0.00034925 0.29481 0.000173 0.88995 0.00052225 586.8353747776627 49.194 0.31329 43.798 43.588 43.901 -5.3961 38 21 2 0 0 0 0.010233 2 30760 30615;30760 87.258 20.802 1 59218000 + 24380 199 16520 16839 28782;28783 28783 0.07712471080526484 IRFKHLFWWWF 11 Unmodified _IRFKHLFWWWF_ 0 0 0 REV__nc|ENSG00000166262|Q96M60-2|FAM227B REV__nc|ENSG00000166262|Q96M60-2|FAM227B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.443603515625 2 833.445706 1664.87686 NaN NaN NaN NaN NaN NaN NaN 55.455 1 55.455 54.955 55.955 0 0 0 0 0.9435 1 30808 30808 0 0 1 + 24381 29762 16521 16840 28784 28784 0.07101580918424588 IRFYNLSF 8 Unmodified _IRFYNLSF_ 0 0 0 REV__ENST00000316334.4_1_13:28120098-28120254:-|nuORF REV__ENST00000316334.4_1_13:28120098-28120254:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.284423828125 2 530.284734 1058.55492 NaN NaN NaN NaN NaN NaN NaN 98.219 1 92.044 91.544 92.544 -6.1757 0 0 0 0.77249 1 65126 65126 24.674 2.2213 1 + 24382 25470 16522 16841 28785 28785 0.027980641684507646 IRGQGKEL 8 Unmodified _IRGQGKEL_ 0 0 0 REV__nc|ENSG00000095002|P43246-2|MSH2 REV__nc|ENSG00000095002|P43246-2|MSH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7668151855469 2 450.766709 899.518865 NaN NaN NaN NaN NaN NaN NaN 31.723 1 31.723 31.223 32.223 0 0 0 0 0.95973 1 16536 16536 8.5933 0 1 + 24383 17932 16523 16842 28786 28786 0.06508606991610577 IRGYVLQDAS 10 Unmodified _IRGYVLQDAS_ 0 0 0 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3010864257812 2 561.301113 1120.58767 NaN NaN NaN NaN NaN NaN NaN 39.099 1 39.111 38.611 39.611 0.011452 0 0 0 0.97592 1 20817 20817 3.2813 0 1 24384 7888 16524 16843 28787 28787 0.032202265006844755 IRHCYSIQ 8 Unmodified _IRHCYSIQ_ 0 0 0 ENST00000478222.1_1_X:47483676-47485967:-|nuORF;ENST00000485991.5_1_X:47485455-47487711:-|nuORF;ENSG00000126759|ENST00000396992|CFP ENST00000478222.1_1_X:47483676-47485967:-|nuORF ENST00000478222.1_1_X:47483676-47485967:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2598876953125 2 510.258194 1018.50183 NaN NaN NaN NaN NaN NaN NaN 26.213 1 26.213 25.713 26.713 0 0 0 0 0.97444 1 13468 13468 2.3027 0 1 24385 3965 16525 16844 28788 28788 -0.006676368858393289 IRHGIKTLQ 9 Unmodified _IRHGIKTLQ_ 0 0 0 ENST00000301332.2_1_8:145699020-145699230:+|nuORF ENST00000301332.2_1_8:145699020-145699230:+|nuORF ENST00000301332.2_1_8:145699020-145699230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3306884765625 2 533.330008 1064.64546 0.55969 0.0002985 -0.63709 -0.00033978 -0.077397 -4.1278E-05 533.3297081418424 36.555 0.38081 32.272 32.143 32.524 -4.2835 36 23 2 0 0 0 0.19127 1 21437 21437 24.021 2.2739 1 17100000 24386 11568 16526 16845 28789 28789 0.1157253321675853 IRHLSEHI 8 Unmodified _IRHLSEHI_ 0 0 0 ENSG00000187815|ENST00000372706|ZFP69 ENSG00000187815|ENST00000372706|ZFP69 ENSG00000187815|ENST00000372706|ZFP69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1008.802978515625 1 1004.56359 1003.55631 0.38914 0.00039091 0.68717 0.0006903 1.0763 0.0010812 1004.563969821859 85.423 1.5389 84.921 84.578 86.117 -0.5015 303 90 5 0 0 0 0.70294 1 46684 46684 16.942 3.4344 1 651890000 24387 9598 16527 16846 28790 28790 0.05467698257234588 IRHLTTTTDY 10 Unmodified _IRHLTTTTDY_ 0 0 0 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5472717285156 3 407.547177 1219.6197 NaN NaN NaN NaN NaN NaN NaN 14.262 1 14.262 13.762 14.762 0 0 0 0 1.0024 1 6766 6766 0.13989 0 1 24388 10202 16528 16847 28791 28791 0.01867594183795518 IRHTLLHFL 9 Unmodified _IRHTLLHFL_ 0 0 0 MER49_dup1305|chr21:41210187-41211078:+|1.2015258161863536|0.4412608656295442|1.45|179.0|2|1|sense MER49_dup1305|chr21:41210187-41211078:+|1.2015258161863536|0.4412608656295442|1.45|179.0|2|1|sense MER49_dup1305|chr21:41210187-41211078:+|1.2015258161863536|0.4412608656295442|1.45|179.0|2|1|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9020385742188 3 383.901226 1148.68185 1.486 0.00057048 1.513 0.00058083 2.999 0.0011513 383.90151920288133 32.385 0.47732 28.529 28.337 28.814 -3.8562 69 26 4 0 0 0 0.23158 1 18425 18425 19.362 1.9193 1 62600000 24389 15992 16529 16848 28792 28792 0.11345410113472099 IRIIAPPKR 9 Unmodified _IRIIAPPKR_ 0 0 0 ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF ENSG00000196604|ENST00000409914|POTEF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3583374023438 2 532.358568 1062.70258 1.5393 0.00081944 0.46543 0.00024777 2.0047 0.0010672 532.3588971604026 106.08 0.83551 99.909 99.676 100.51 -6.1757 342 135 3 0 0 0 0.61381 1 71336 71336 0.52476 0.52476 1 10174000 24390 9641;9849 16530 16849 28793 28793 0.1737400049310054 IRKHLLVFA 9 Unmodified _IRKHLLVFA_ 0 0 0 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9;nc|ENSG00000029364|Q9NUM3-3|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MSMS AL20221201_MKP_PDAC_01 4 548.8527221679688 2 548.853119 1095.69168 NaN NaN NaN NaN NaN NaN NaN 15.678 1 13.151 12.651 13.651 -2.5273 0 0 0 0.85359 1 8066 8066 2.0598 0.21551 1 24391 578 16531 16850 28794 28794 0.14766598118853835 IRKKLFIK 8 Unmodified _IRKKLFIK_ 0 0 0 REV__ENST00000437852.2_1_9:116613102-116613318:-|nuORF REV__ENST00000437852.2_1_9:116613102-116613318:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1045.72509765625 1 1045.72445 1044.71717 -0.29318 -0.00030659 -2.2809 -0.0023852 -2.5741 -0.0026918 1046.7287139896405 41.483 0.19957 41.18 41.112 41.312 -0.30304 9 8 2 0 0 0 8.7369 1 21942 21942 0 0 1 3973900 + 24392 27046 16532 16851 28795 28795 0.19660072641249826 IRKKLFIK 8 Unmodified _IRKKLFIK_ 0 0 0 REV__ENST00000437852.2_1_9:116613102-116613318:-|nuORF REV__ENST00000437852.2_1_9:116613102-116613318:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3630981445312 2 523.365862 1044.71717 NaN NaN NaN NaN NaN NaN NaN 103.81 1 103.76 103.26 104.26 -0.048737 0 0 0 0.97444 1 57645 57645 0 0 1 + 24393 27046 16532 16851 28796 28796 0.19660072641249826 IRKKRCYIL 9 Unmodified _IRKKRCYIL_ 0 0 0 REV__ENST00000467525.5_2_1:161479802-161487805:+|nuORF REV__ENST00000467525.5_2_1:161479802-161487805:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2508544921875 3 398.249749 1191.72742 NaN NaN NaN NaN NaN NaN NaN 89.057 1 89.057 88.557 89.557 0 0 0 0 0.85359 1 49283 49283 1.0715 0 1 + 24394 17521 16533 16852 28797 28797 0.13922312304202933 IRKLGQIPE 9 Unmodified _IRKLGQIPE_ 0 0 0 ENST00000472324.5_1_X:152935914-152936728:-|nuORF;nc|ENSG00000130822|Q6P2M8-3|PNCK;ENST00000466074.5_1_X:152935914-152937529:-|nuORF;ENSG00000130822|ENST00000340888|PNCK;nc|ENSG00000130822|Q6P2M8-6|PNCK;nc|ENSG00000130822|Q6P2M8-2|PNCK;nc|ENSG00000130822|Q6P2M8-5|PNCK ENST00000472324.5_1_X:152935914-152936728:-|nuORF ENST00000472324.5_1_X:152935914-152936728:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.7911376953125 2 527.324391 1052.63423 1.6986 0.00089569 -0.14309 -7.5456E-05 1.5555 0.00082023 527.3241344006567 41.761 0.36133 37.154 36.999 37.36 -4.6079 34 22 2 0 0 0 0.15117 1 25164 25164 22.736 3.4793 1 5144800 24395 4269 16534 16853 28798 28798 0.11001711122617053 IRKPCVLIL 9 Carbamidomethyl (C) _IRKPC(Carbamidomethyl (C))VLIL_ IRKPC(1)VLIL IRKPC(55)VLIL 0 1 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1;ENST00000487296.1_1_6:32814881-32814917:-|nuORF nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3551635742188 2 556.354637 1110.69472 0.22339 0.00012428 0.84709 0.00047128 1.0705 0.00059557 556.3550502179088 85.377 0.63659 79.201 78.893 79.53 -6.1757 68 39 2 0 0 0 0.031062 2 56097 56097;56232 54.774 12.679 1 24502000 24396 7756 16535 16854 28799;28800 28799 755 0.14380105181339786 IRKPYIWEY 9 Unmodified _IRKPYIWEY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2327270507812 3 423.232641 1266.67609 0.60589 0.00025643 -0.5778 -0.00024454 0.028094 1.189E-05 423.23266563004245 49.376 0.40701 49.332 49.049 49.456 -0.04369 62 19 5 0 0 0 0.12424 2 26661 26619;26661 28.495 14.276 1 18177000 24397 4838 16536 16855 28801;28802 28802 0.05342266811112495 IRKPYIWEY 9 Unmodified _IRKPYIWEY_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.345458984375 2 634.345323 1266.67609 0.60014 0.0003807 -0.5016 -0.00031819 0.098546 6.2512E-05 634.34488284821 49.373 0.22096 49.329 49.215 49.436 -0.04369 29 10 3 0 0 0 0.12424 1 26656 26656 30.637 14.487 1 5346800 24398 4838 16536 16855 28803 28803 0.05342266811112495 IRKQPQELL 9 Unmodified _IRKQPQELL_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5637817382812 3 375.564391 1123.67134 -0.26553 -9.9724E-05 -0.15996 -6.0076E-05 -0.42549 -0.0001598 375.5642197358133 34.521 0.24255 34.329 34.174 34.417 -0.19131 15 10 2 0 0 0 0.091924 1 18040 18040 34.932 5.0915 1 3209900 24399 1809 16537 16856 28804 28804 0.11445382668375714 IRKQPQELL 9 Unmodified _IRKQPQELL_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.564391 1123.67134 -0.63809 -0.00023965 0.56173 0.00021097 -0.076362 -2.8679E-05 375.8989600196127 34.375 0.1699 34.375 34.308 34.478 0 0.022875 0.00058957 NaN 34.932 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1102700 24400 1809 16537 16856 0.11445382668375714 IRKRILLYF 9 Unmodified _IRKRILLYF_ 0 0 0 REV__nc|ENSG00000279980|Q9BY60|GABARAPL3 REV__nc|ENSG00000279980|Q9BY60|GABARAPL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3960571289062 2 611.395151 1220.77575 NaN NaN NaN NaN NaN NaN NaN 83.651 1 83.715 83.215 84.215 0.063171 0 0 0 0.84369 1 46280 46280 2.3027 0.65011 1 + 24401 30005 16538 16857 28805 28805 0.17419129215750218 IRLCPGTLFFF 11 Unmodified _IRLCPGTLFFF_ 0 0 0 REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF REV__ENST00000424834.6_1_13:24878485-24878731:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.360107421875 2 657.357376 1312.7002 NaN NaN NaN NaN NaN NaN NaN 69.334 1 69.334 68.834 69.834 0 0 0 0 0.94165 1 38631 38631 1.3295 0.25807 1 + 24402 26881 16539 16858 28806 28806 0.05635783973161779 IRLDTLPVIF 10 Unmodified _IRLDTLPVIF_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2452392578125 3 396.244658 1185.71214 0.588 0.00023299 0.29819 0.00011816 0.88619 0.00035115 396.5788852978808 57.134 0.16265 57.068 56.978 57.14 -0.066036 12 7 2 0 0 0 0.60478 1 31101 31101 10.899 3.4219 1 2713800 + 24403 17737 16540 16859 28807 28807 0.12671723987978112 IRLENEIQTY 10 Unmodified _IRLENEIQTY_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.8367919921875 2 639.838059 1277.66157 0.71113 0.00045501 -1.357 -0.00086825 -0.64586 -0.00041325 639.8370056836403 46.177 0.25003 46.177 46.044 46.294 0 24 11 3 0 0 0 0.22922 1 25225 25225 36.506 21.668 1 3238500 + 24404 169 16541 16860 28808 28808 0.033841498723404584 IRLGLRLYF 9 Unmodified _IRLGLRLYF_ 0 0 0 REV__ENSG00000197953|ENST00000356517|AADACL2 REV__ENSG00000197953|ENST00000356517|AADACL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8563842773438 2 575.858401 1149.70225 NaN NaN NaN NaN NaN NaN NaN 38.602 1 38.614 38.114 39.114 0.011452 0 0 0 0.82396 1 20533 20533 4.756 0.42677 1 + 24405 23972 16542 16861 28809 28809 0.13338580773279318 IRLGSWYRYVK 11 Unmodified _IRLGSWYRYVK_ 0 0 0 REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF REV__ENST00000430298.6_1_19:12222347-12224207:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.9588928222656 4 360.958215 1439.80375 1.359 0.00049055 0.61079 0.00022047 1.9698 0.00071101 360.9584333600784 43.552 0.34899 38.787 38.618 38.967 -4.7648 51 21 3 0 0 0 0.73237 1 26581 26581 1.2148 1.2148 1 20212000 + 24406 26961 16543 16862 28810 28810 0.10144407405141465 IRLLKKFKV 9 Unmodified _IRLLKKFKV_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2706909179688 3 382.269138 1143.78558 NaN NaN NaN NaN NaN NaN NaN 72.85 1 72.374 71.874 72.874 -0.47588 0 0 0 0.86004 1 39867 39867 0.26902 0 1 24407 6146 16544 16863 28811 28811 0.2194431722111858 IRLTQIRLI 9 Unmodified _IRLTQIRLI_ 0 0 0 REV__ENST00000264888.5_1_4:76924418-76924595:-|nuORF REV__ENST00000264888.5_1_4:76924418-76924595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9211730957031 3 375.920397 1124.73936 1.6773 0.00063053 -0.37149 -0.00013965 1.3058 0.00049088 375.92027799350126 89.524 0.53871 83.348 83.076 83.615 -6.1757 87 29 4 0 0 0 0.32235 1 59231 59231 16.149 0 1 101400000 + 24408 25082 16545 16864 28812 28812 0.18198252319007224 IRNKNRLQLGV 11 Unmodified _IRNKNRLQLGV_ 0 0 0 nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.605712890625 3 437.60536 1309.79425 0.23305 0.00010198 0.33052 0.00014464 0.56357 0.00024662 437.6055382068794 38.007 0.18793 38.024 37.922 38.11 0.01704 13 8 2 0 0 0 0.73349 1 20210 20210 1.1098 0.18422 1 1055800 24409 8111 16546 16865 28813 28813 0.15174639119618405 IRPDILRGAF 10 Unmodified _IRPDILRGAF_ 0 0 0 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8971252441406 3 386.564502 1156.67168 0.26907 0.00010401 0.41639 0.00016096 0.68546 0.00026497 386.5650651833448 25.492 0.39717 22.609 22.425 22.822 -2.8831 33 21 2 0 0 0 0.65023 1 14061 14061 8.4443 1.8139 1 7658900 24410 10110 16547 16866 28814 28814 0.09960802388241063 IRPDRKIL 8 Unmodified _IRPDRKIL_ 0 0 0 ENST00000460402.5_1_22:19776234-19842274:-|nuORF;ENSG00000185838|ENST00000329517|GNB1L ENST00000460402.5_1_22:19776234-19842274:-|nuORF ENST00000460402.5_1_22:19776234-19842274:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.82763671875 2 505.827101 1009.63965 0.67897 0.00034344 -0.19164 -9.6935E-05 0.48734 0.00024651 505.8269680476237 43.052 0.23185 43.036 42.912 43.144 -0.015667 17 10 2 0 0 0 0.64853 1 23073 23073 21.747 1.293 1 4864700 24411 9419 16548 16867 28815 28815 0.13521434705091906 IRPEHVLRL 9 Unmodified _IRPEHVLRL_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B;ENST00000539658.1_1_12:121148334-121149523:+|nuORF ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8984680175781 3 378.236497 1131.68766 0.083008 3.1397E-05 -1.6294 -0.00061629 -1.5464 -0.00058489 378.23574637286185 33.745 0.25608 33.774 33.625 33.881 0.028934 23 10 3 0 0 0 0.31356 1 17741 17741 16.566 7.5896 1 1809400 24412 8554 16549 16868 28816 28816 0.1270850862510997 IRPGTAFEL 9 Unmodified _IRPGTAFEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2817687988281 2 502.282192 1002.54983 -0.32023 -0.00016084 0.33443 0.00016798 0.014201 7.1331E-06 502.2823237229838 54.526 0.38126 54.059 53.861 54.242 -0.46664 59 19 4 0 0 0 0.0082475 2 29483 29483;29585 92.653 33.975 1 30265000 24413 16412 16550 16869 28817;28818 28817 0.0486576030583592 IRPGTAFEL 9 Unmodified _IRPGTAFEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2829284667969 2 502.282192 1002.54983 -0.044391 -2.2297E-05 1.0713 0.0005381 1.0269 0.0005158 502.2827587825599 54.139 0.30175 54.072 53.941 54.243 -0.066936 31 14 3 0 0 0 0.10247 1 29367 29367 32.786 13.529 1 5628600 24414 16412 16550 16869 28819 28819 0.0486576030583592 IRPGTAFEL 9 Unmodified _IRPGTAFEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.283447265625 2 502.282192 1002.54983 0.99134 0.00049793 1.2686 0.00063719 2.2599 0.0011351 502.28287900879565 59.753 0.4498 53.638 53.452 53.902 -6.1147 59 25 3 0 0 0 0.025842 2 38327 38327;38474 57.722 23.32 1 119250000 24415 16412 16550 16869 28820;28821 28820 0.0486576030583592 IRQEEKLKI 9 Unmodified _IRQEEKLKI_ 0 0 0 REV__ENSG00000213398|ENST00000264005|LCAT REV__ENSG00000213398|ENST00000264005|LCAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2403564453125 3 386.239796 1155.69756 0.87587 0.0003383 0.26875 0.0001038 1.1446 0.0004421 386.2399478356104 45.026 0.44829 40.174 39.975 40.423 -4.852 69 29 3 0 0 0 0.29507 1 27636 27636 17.443 3.8278 1 27594000 + 24416 24281 16551 16870 28822 28822 0.12593651839847553 IRQGKAKLVI 10 Unmodified _IRQGKAKLVI_ 0 0 0 ENST00000518164.5_1_8:99037863-99057595:-|nuORF;ENSG00000156482|ENST00000287038|RPL30 ENST00000518164.5_1_8:99037863-99057595:-|nuORF ENST00000518164.5_1_8:99037863-99057595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9207458496094 3 375.920397 1124.73936 1.6773 0.00063053 -0.37149 -0.00013965 1.3058 0.00049088 375.92027799350126 89.524 0.53871 83.348 83.076 83.615 -6.1757 87 29 4 0 0 0 0.24511 1 58976 58976 30.703 1.2663 1 101400000 24417 6457 16552 16871 28823 28823 0.18198252319007224 IRRDTRGPLL 10 Unmodified _IRRDTRGPLL_ 0 0 0 REV__ENST00000433258.5_1_2:71215729-71221885:-|nuORF REV__ENST00000433258.5_1_2:71215729-71221885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5790405273438 3 399.578923 1195.71494 -0.18523 -7.4014E-05 0.585 0.00023375 0.39977 0.00015974 399.57913714597595 29.823 0.62662 29.854 29.674 30.3 0.030106 69 25 5 0 0 0 0.65282 1 15613 15613 4.7159 0.18705 1 145620000 + 24418 26997 16553 16872 28824 28824 0.12490992165521675 IRRLEHRGRRL 11 Unmodified _IRRLEHRGRRL_ 0 0 0 ENSG00000263201|ENST00000574912|DPEP2NB ENSG00000263201|ENST00000574912|DPEP2NB ENSG00000263201|ENST00000574912|DPEP2NB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.5028381347656 4 366.230097 1460.89128 0.87792 0.00032152 -0.18842 -6.9003E-05 0.6895 0.00025252 366.22984151951465 24.173 0.17743 21.346 21.196 21.374 -2.8273 12 9 2 0 0 0 0.30587 1 13128 13128 1.2148 0.70888 1 1555500 24419 10853 16554 16873 28825 28825 0.1792704611928002 IRRSLPATL 9 Unmodified _IRRSLPATL_ 0 0 0 ENST00000507638.1_1_4:177610796-177650693:-|nuORF;ENSG00000150630|ENST00000618562|VEGFC ENST00000507638.1_1_4:177610796-177650693:-|nuORF ENST00000507638.1_1_4:177610796-177650693:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8248901367188 2 513.824558 1025.63456 1.1335 0.00058241 -0.38278 -0.00019668 0.75069 0.00038573 513.8244387782029 37.492 0.38049 33.208 33.007 33.387 -4.2835 54 22 3 0 0 0 0.1685 1 22057 22057 26.268 0.86883 1 37074000 24420 6064 16555 16874 28826 28826 0.12277130842471706 IRRVEKGATL 10 Unmodified _IRRVEKGATL_ 0 0 0 REV__ENSG00000136040|ENST00000258526|PLXNC1;REV__ENST00000546733.1_1_12:94544628-94580325:+|nuORF REV__ENSG00000136040|ENST00000258526|PLXNC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5729370117188 3 381.571657 1141.69314 1.595 0.0006086 0.55801 0.00021292 2.153 0.00082152 381.57177111733074 20.51 0.27508 17.817 17.646 17.921 -2.693 23 13 2 0 0 0 0.34249 1 10891 10891 17.049 0 1 3640400 + 24421 20130;28664 16556 16875 28827 28827 0.12796187416938665 IRRVIRWWT 9 Unmodified _IRRVIRWWT_ 0 0 0 REV__ENST00000373518.1_1_X:72347145-72347370:-|nuORF REV__ENST00000373518.1_1_X:72347145-72347370:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3869018554688 2 643.385648 1284.75674 NaN NaN NaN NaN NaN NaN NaN 56.21 1 56.141 55.641 56.641 -0.068737 0 0 0 0.85798 1 30566 30566 0.52476 0.12405 1 + 24422 26150 16557 16876 28828 28828 0.12575592644657263 IRSALSQRCH 10 Unmodified _IRSALSQRCH_ 0 0 0 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8773193359375 3 390.876863 1169.60876 -0.25897 -0.00010123 0.93885 0.00036697 0.67988 0.00026575 390.8770302955896 51.334 0.41425 51.28 51.007 51.421 -0.053871 48 20 3 0 0 0 0.67033 1 27790 27790 3.3196 0.58445 1 5011900 + 24423 23954 16558 16877 28829 28829 0.030739133285351272 IRSALSQRCH 10 Unmodified _IRSALSQRCH_ 0 0 0 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 390.876863 1169.60876 0.33314 0.00013022 1.0668 0.000417 1.4 0.00054722 390.8772542056536 51.55 0.27391 51.55 51.348 51.622 0 0.13463 6.7156E-05 NaN 3.3196 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1380400 + 24424 23954 16558 16877 0.030739133285351272 IRSEPLRKM 9 Unmodified _IRSEPLRKM_ 0 0 0 REV__ENSG00000243708|ENST00000458483|PLA2G4B REV__ENSG00000243708|ENST00000458483|PLA2G4B MSMS AL20221201_MKP_PDAC_01 4 377.5450744628906 3 377.221859 1128.64375 NaN NaN NaN NaN NaN NaN NaN 42.76 1 38.075 37.575 38.575 -4.6846 0 0 0 0.70001 1 25871 25871 6.1918 0.78914 1 + 24425 24475 16559 16878 28830 28830 0.08457156136478261 IRSFNKTYL 9 Unmodified _IRSFNKTYL_ 0 0 0 REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5513305664062 3 381.216991 1140.62914 NaN NaN NaN NaN NaN NaN NaN 24.906 1 22.023 21.523 22.523 -2.8831 0 0 0 0.63508 1 13591 13591 11.518 4.4808 1 + 24426 25193 16560 16879 28831 28831 0.06445407260002867 IRSREKPLAL 10 Unmodified _IRSREKPLAL_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;ENST00000508381.1_1_6:82881144-82882279:-|nuORF;nc|ENSG00000005700|Q9P2D0-3|IBTK;ENST00000505222.5_1_6:82881144-82901025:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MSMS AL20221201_MKP_PDAC_01 4 394.9134521484375 3 394.915423 1181.72444 NaN NaN NaN NaN NaN NaN NaN 30.507 1 27.01 26.51 27.51 -3.497 0 0 0 0.67239 1 17230 17230 17.863 2.3247 1 24427 313 16561 16880 28832 28832 0.14084760451055445 IRTENMCARY 10 Unmodified _IRTENMCARY_ 0 0 0 REV__nc|ENSG00000117298|P42892-3|ECE1 REV__nc|ENSG00000117298|P42892-3|ECE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5332946777344 3 419.533997 1255.58016 NaN NaN NaN NaN NaN NaN NaN 34.756 1 34.565 34.065 35.065 -0.19131 0 0 0 0.78298 1 18176 18176 7.9454 0.46833 1 + 24428 19096 16562 16881 28833 28833 -0.03740572362903549 IRTKDEVLTW 10 Unmodified _IRTKDEVLTW_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8507080078125 2 630.85097 1259.68739 0.3719 0.00023461 -0.7756 -0.00048929 -0.4037 -0.00025468 630.8504560525279 60.899 0.27597 60.856 60.691 60.967 -0.04351 20 13 2 0 0 0 0.32072 1 33200 33200 26.268 2.4784 1 4468100 + 24429 21687 16563 16882 28834 28834 0.06793044114601798 IRTKDEVLTW 10 Unmodified _IRTKDEVLTW_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 630.85097 1259.68739 -0.56592 -0.00035701 0.14375 9.0683E-05 -0.42217 -0.00026633 630.8512469716894 61.263 0.18368 60.774 60.674 60.858 -0.48932 -0.040732 0.0009394 NaN 26.268 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1522400 + 24430 21687 16563 16882 0.06793044114601798 IRVLREDWH 9 Unmodified _IRVLREDWH_ 0 0 0 ENST00000527146.1_2_11:308398-308780:+|nuORF ENST00000527146.1_2_11:308398-308780:+|nuORF ENST00000527146.1_2_11:308398-308780:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5609741210938 3 408.55964 1222.65709 NaN NaN NaN NaN NaN NaN NaN 20.522 1 20.55 20.05 21.05 0.028357 0 0 0 0.85852 1 10390 10390 0.20686 0.083992 1 24431 14829 16564 16883 28835 28835 0.054667302400503104 IRVRKWFALAP 11 Unmodified _IRVRKWFALAP_ 0 0 0 REV__ENSG00000143443|ENST00000368926|C1orf56 REV__ENSG00000143443|ENST00000368926|C1orf56 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.9479064941406 3 452.946946 1355.81901 NaN NaN NaN NaN NaN NaN NaN 100.69 1 100.65 100.15 101.15 -0.04216 0 0 0 0.94301 1 55939 55939 0.094841 0 1 + 24432 20640 16565 16884 28836 28836 0.15533318993038847 IRVWALTRPR 10 Unmodified _IRVWALTRPR_ 0 0 0 REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF REV__ENST00000479237.5_1_9:131773211-131773688:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2642517089844 3 423.263046 1266.76731 NaN NaN NaN NaN NaN NaN NaN 105.29 1 99.118 98.618 99.618 -6.1757 0 0 0 0.99146 1 70550 70550 1.5923 0.26264 1 + 24433 27650 16566 16885 28837 28837 0.14459575299110838 IRYDKLTIY 9 Unmodified _IRYDKLTIY_ 0 0 0 REV__nc|nan|A6NFR6-3|C5orf60 REV__nc|nan|A6NFR6-3|C5orf60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5614929199219 3 395.560646 1183.66011 0.45344 0.00017936 -1.5882 -0.00062822 -1.1347 -0.00044886 395.5598793873665 24.49 0.42259 21.663 21.486 21.908 -2.8273 64 23 4 0 0 0 0.42049 1 13383 13383 11.495 0.59575 1 28217000 + 24434 30049 16567 16886 28838 28838 0.0756256057425162 IRYPDPVI 8 Unmodified _IRYPDPVI_ 0 0 0 ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7799682617188 2 486.779285 971.544017 1.3505 0.00065737 -0.010387 -5.056E-06 1.3401 0.00065232 486.7790878864045 96.565 0.45493 90.389 90.15 90.605 -6.1757 75 26 4 0 0 0 0.66338 1 64131 64131 20.454 0 1 147420000 24435 4163 16568 16887 28839 28839 0.057106617941940385 ISAAVSVVI 9 Unmodified _ISAAVSVVI_ 0 0 0 ENST00000343638.9_1_17:42283916-42284555:-|nuORF ENST00000343638.9_1_17:42283916-42284555:-|nuORF ENST00000343638.9_1_17:42283916-42284555:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 858.5288696289062 1 858.529495 857.522219 0.32991 0.00028324 1.5962 0.0013704 1.9261 0.0016536 858.530739759487 80.52 0.21941 80.028 79.906 80.126 -0.49247 11 8 2 0 0 0 0.32871 1 44080 44080 15.847 4.2069 1 280060 24436 12005 16569 16888 28840 28840 0.0877585704562307 ISADELWS 8 Unmodified _ISADELWS_ 0 0 0 REV__ENST00000452575.1_1_X:9880990-9881167:+|nuORF REV__ENST00000452575.1_1_X:9880990-9881167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.443603515625 1 920.435989 919.428712 0.41771 0.00038448 0.37546 0.00034559 0.79317 0.00073007 920.4359750166271 53.316 0.36612 53.316 53.12 53.486 0 24 15 2 0 0 0 0.79669 1 29479 29479 8.5933 1.304 1 2476300 + 24437 27219 16570 16889 28841 28841 -0.03422487127477325 ISADQLFHLI 10 Unmodified _ISADQLFHLI_ 0 0 0 REV__ENSG00000163104|ENST00000354268|SMARCAD1 REV__ENSG00000163104|ENST00000354268|SMARCAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2173767089844 3 386.21688 1155.62881 0.63519 0.00024532 0.83225 0.00032143 1.4674 0.00056675 386.2171410547782 49.466 0.65777 49.417 49.065 49.723 -0.048828 77 32 3 0 0 0 0.69385 1 26709 26709 3.5871 0.85186 1 5267000 + 24438 21726 16571 16890 28842 28842 0.057219875401415266 ISARCEVY 8 Unmodified _ISARCEVY_ 0 0 0 ENST00000321169.9_1_3:15614744-15616541:-|nuORF ENST00000321169.9_1_3:15614744-15616541:-|nuORF ENST00000321169.9_1_3:15614744-15616541:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7306823730469 2 470.731477 939.448402 -0.26412 -0.00012433 3.023 0.001423 2.7588 0.0012987 470.732868454025 26.589 0.35643 26.589 26.468 26.824 0 41 16 3 0 0 0 0.60622 1 13651 13651 25.399 3.6527 1 4470500 24439 11769 16572 16891 28843 28843 -0.023744343883663532 ISASNAWK 8 Unmodified _ISASNAWK_ 0 0 0 nc|ENSG00000122417|Q9ULJ1-5|ODF2L;nc|ENSG00000122417|Q9ULJ1-6|ODF2L;nc|ENSG00000122417|Q9ULJ1-3|ODF2L;nc|ENSG00000122417|Q9ULJ1-2|ODF2L;nc|ENSG00000122417|Q9ULJ1|ODF2L;ENSG00000122417|ENST00000460698|ODF2L nc|ENSG00000122417|Q9ULJ1-5|ODF2L nc|ENSG00000122417|Q9ULJ1-5|ODF2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7320556640625 2 438.732335 875.450116 0.43345 0.00019017 -0.25805 -0.00011321 0.1754 7.6954E-05 438.73219473446363 48.287 0.45238 47.915 47.671 48.123 -0.37172 54 22 3 0 0 0 0.46677 2 25847 25847;25948 37.974 5.6685 1 7198100 24440 3637 16573 16892 28844;28845 28844 0.007409426919025464 ISAYRSRGV 9 Unmodified _ISAYRSRGV_ 0 0 0 ENST00000405201.5_1_12:124808981-124809239:-|nuORF ENST00000405201.5_1_12:124808981-124809239:-|nuORF ENST00000405201.5_1_12:124808981-124809239:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7837829589844 2 504.78289 1007.55123 1.0716 0.00054092 0.043866 2.2143E-05 1.1155 0.00056306 504.7829336477555 32.377 0.34211 28.521 28.352 28.694 -3.8562 37 19 3 0 0 0 0.10247 1 18395 18395 32.786 11.249 1 23567000 24441 12919 16574 16893 28846 28846 0.0477539439461907 ISCAGPQTY 9 Unmodified _ISCAGPQTY_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2;ENSG00000056097|ENST00000265069|ZFR ENSG00000105278|ENST00000262961|ZFR2;ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2220764160156 2 470.21566 938.416767 0.84521 0.00039743 0.48933 0.00023009 1.3345 0.00062752 470.2156915315797 48.362 0.58685 43.128 42.834 43.421 -5.2339 81 34 3 0 0 0 0.39863 1 30307 30307 12.532 2.3482 1 78655000 24442 783;2297 16575 16894 28847 28847 -0.054904271423197315 ISCFILLHI 9 Unmodified _ISCFILLHI_ 0 0 0 REV__ENST00000514760.1_1_5:180222560-180222758:-|nuORF REV__ENST00000514760.1_1_5:180222560-180222758:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.265380859375 2 529.806988 1057.59942 0.47742 0.00025294 -0.35883 -0.00019011 0.11859 6.283E-05 529.8065844149713 69.156 0.26301 69.156 69.023 69.286 0 17 11 2 0 0 0 0.18882 1 38524 38524 15.847 4.2069 1 1263400 + 24443 28200 16576 16895 28848 28848 0.07292751990303259 ISCKLSCSCI 10 Unmodified _ISCKLSCSCI_ 0 0 0 nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2390747070312 2 528.747956 1055.48136 -0.45047 -0.00023819 1.5667 0.00082838 1.1162 0.00059019 528.7477570287388 55.504 0.22606 55.504 55.347 55.573 0 23 9 4 0 0 0 0.23057 1 30813 30813 13.042 2.8591 1 1846400 24444 1409 16577 16896 28849 28849 -0.04416311652175864 ISCRIINTF 9 Carbamidomethyl (C) _ISC(Carbamidomethyl (C))RIINTF_ ISC(1)RIINTF ISC(81)RIINTF 0 1 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3009643554688 2 562.300059 1122.58556 1.4326 0.00080553 0.65126 0.0003662 2.0838 0.0011717 562.3003402651755 58.412 0.50937 52.337 52.109 52.618 -6.0745 68 27 3 0 0 0 0.0099157 1 37447 37447 80.676 40.719 1 72816000 24445 7248 16578 16897 28850 28850 710 0.02917474491187022 ISCRIINTF 9 Carbamidomethyl (C) _ISC(Carbamidomethyl (C))RIINTF_ ISC(1)RIINTF ISC(68)RIINTF 0 1 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MSMS AL20221201_MKP_PDAC_01 4 562.7783813476562 2 562.300059 1122.58556 NaN NaN NaN NaN NaN NaN NaN 58.728 1 52.653 52.153 53.153 -6.0745 0 0 0 0.028685 1 37650 37650 67.838 23.98 1 24446 7248 16578 16897 28851 28851 710 0.02917474491187022 ISCRIINTF 9 Carbamidomethyl (C) _ISC(Carbamidomethyl (C))RIINTF_ 0 1 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 562.300059 1122.58556 1.0873 0.0006114 0.6271 0.00035262 1.7144 0.00096402 562.8019503530305 52.316 0.19999 52.257 52.148 52.348 -0.058918 -0.040041 -2.3815E-05 NaN 80.676 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2291700 24447 7248 16578 16897 710 0.02917474491187022 ISCSSNHTF 9 Unmodified _ISCSSNHTF_ 0 0 0 nc|ENSG00000158062|Q5T124-7|UBXN11;ENST00000475591.5_1_1:26611834-26629395:-|nuORF;nc|ENSG00000158062|Q5T124-6|UBXN11;ENST00000472155.5_1_1:26611834-26629395:-|nuORF nc|ENSG00000158062|Q5T124-7|UBXN11 nc|ENSG00000158062|Q5T124-7|UBXN11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2159423828125 2 498.216192 994.41783 0.39016 0.00019438 0.042349 2.1099E-05 0.43251 0.00021548 498.21611586181996 69.191 0.30673 69.191 69.046 69.353 0 27 13 3 0 0 0 0.5029 1 38559 38559 7.2892 1.5288 1 2173700 24448 13897 16579 16898 28852 28852 -0.07960212773411968 ISCYEASYQ 9 Unmodified _ISCYEASYQ_ 0 0 0 nc|ENSG00000170525|Q16875-4|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2236938476562 2 532.223682 1062.43281 NaN NaN NaN NaN NaN NaN NaN 76.091 1 76.091 75.591 76.591 0 0 0 0 0.6032 1 42315 42315 12.532 0 1 24449 16378 16580 16899 28853 28853 -0.09590765696066228 ISDDRFEDLEE 11 Unmodified _ISDDRFEDLEE_ 0 0 0 ENST00000468963.1_1_9:139301473-139302406:-|nuORF ENST00000468963.1_1_9:139301473-139302406:-|nuORF ENST00000468963.1_1_9:139301473-139302406:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 684.3031005859375 2 684.301704 1366.58885 -0.5218 -0.00035707 0.11851 8.1097E-05 -0.40329 -0.00027597 684.3017575945858 36.414 0.40679 36.165 35.952 36.358 -0.2497 47 18 3 0 0 0 0.58219 2 19060 19060;19164 12.241 6.5088 1 11764000 24450 13822 16581 16900 28854;28855 28854 -0.07977648711744223 ISDFSMSYE 9 Unmodified _ISDFSMSYE_ 0 0 0 nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1524047851562 3 360.151435 1077.43248 NaN NaN NaN NaN NaN NaN NaN 62.776 1 62.776 62.276 63.276 0 0 0 0 0.83049 1 35018 35018 2.2828 0 1 24451 3609 16582 16901 28856 28856 -0.10314185415927568 ISDIARRQVEI 11 Unmodified _ISDIARRQVEI_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.9190063476562 3 433.917493 1298.73065 1.327 0.00057582 3.053 0.0013247 4.38 0.0019006 433.9185067156298 21.608 0.1355 18.873 18.8 18.935 -2.7348 9 7 2 0 0 0 0.68427 1 11604 11604 2.6312 0.19645 1 1618400 24452 10127 16583 16902 28857 28857 0.09323233891905147 ISDTSVVL 8 Unmodified _ISDTSVVL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENST00000553087.1_1_12:52864282-52865086:-|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000548088.1_1_12:52632481-52635423:+|nuORF CON__P05787;ENSG00000185479|ENST00000252252|KRT6B;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.4599609375 1 833.461475 832.454199 -0.36531 -0.00030447 0.59296 0.00049421 0.22765 0.00018974 833.4618747878488 51.988 0.39967 51.988 51.753 52.152 0 54 17 4 0 0 0 0.15234 1 28654 28654 86.121 11.725 1 51487000 + 24453 165;199;150;9374 16584 16903 28858 28858 0.031269873949554494 ISECIQTNR 9 Unmodified _ISECIQTNR_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2693481445312 2 532.263673 1062.51279 0.32525 0.00017312 1.3918 0.00074082 1.7171 0.00091394 532.2636323162209 76.663 0.2939 76.663 76.491 76.785 0 26 11 3 0 0 0 0.52067 1 42571 42571 6.2058 0.44535 1 824480 + 24454 23690 16585 16904 28859 28859 -0.015962793022254118 ISECPEEV 8 Unmodified _ISECPEEV_ 0 0 0 REV__ENSG00000197594|ENST00000647893|ENPP1 REV__ENSG00000197594|ENST00000647893|ENPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.1999816894531 2 453.199676 904.384799 0.26704 0.00012102 -0.3126 -0.00014167 -0.045566 -2.065E-05 453.1994868931234 40.236 0.24168 40.236 40.11 40.352 0 20 11 2 0 0 0 0.5284 1 21635 21635 32.117 0 1 1902400 + 24455 23943 16586 16905 28860 28860 -0.07121839616115722 ISECSCTDYI 10 Unmodified _ISECSCTDYI_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2269897460938 2 567.228107 1132.44166 0.60715 0.00034439 -1.4284 -0.00081024 -0.82128 -0.00046585 567.2270828043543 90.284 0.39755 89.782 89.601 89.999 -0.50171 39 18 4 0 0 0 0.69064 1 49356 49356 3.9444 1.6417 1 968660 + 24456 18723 16587 16906 28861 28861 -0.11926160121925022 ISEDWALL 8 Unmodified _ISEDWALL_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2484741210938 2 473.74765 945.480748 0.80591 0.0003818 -0.28659 -0.00013577 0.51932 0.00024603 473.74792825770794 80.325 0.35358 74.149 73.924 74.278 -6.1757 32 20 2 0 0 0 0.57045 1 52674 52674 28.487 2.1456 1 9110400 24457 9153 16588 16907 28862 28862 0.0058267628628527746 ISEECEPWD 9 Unmodified _ISEECEPWD_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7188720703125 2 554.218597 1106.42264 0.6221 0.00034478 1.7892 0.00099159 2.4113 0.0013364 554.2199566995454 91.984 0.29042 91.503 91.406 91.697 -0.48092 26 16 2 0 0 0 0.58865 1 50288 50288 2.0598 0.57785 1 583350 24458 7217 16589 16908 28863 28863 -0.1263137342129994 ISEECEPWD 9 Unmodified _ISEECEPWD_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.218597 1106.42264 1.2078 0.00066937 2.325 0.0012886 3.5328 0.0019579 554.2196841820165 91.563 0.27667 91.599 91.449 91.726 0.036499 0.048194 0.00026121 NaN 2.0598 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3438900 24459 7217 16589 16908 -0.1263137342129994 ISEGGVATLVI 11 Unmodified _ISEGGVATLVI_ 0 0 0 REV__ENSG00000182963|ENST00000592524|GJC1 REV__ENSG00000182963|ENST00000592524|GJC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7998046875 2 529.808239 1057.60193 0.258 0.00013669 0.33 0.00017484 0.58801 0.00031153 529.8082281440567 93.41 0.91599 87.234 86.964 87.88 -6.1757 178 60 4 0 0 0 0.37677 1 62241 62241 22.736 1.1993 1 477970000 + 24460 23310 16590 16909 28864 28864 0.0754287892893899 ISEGSCPERI 10 Unmodified _ISEGSCPERI_ 0 0 0 nc|ENSG00000090097|P57723-2|PCBP4;ENST00000497390.5_1_3:51992079-51994784:-|nuORF;ENSG00000090097|ENST00000461554|PCBP4;ENST00000492809.5_1_3:51992079-51994784:-|nuORF nc|ENSG00000090097|P57723-2|PCBP4 nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.1777648925781 3 364.178096 1089.51246 1.265 0.0004607 -0.018209 -6.6312E-06 1.2468 0.00045407 364.17781239251707 38.883 0.38094 34.432 34.251 34.632 -4.4509 53 23 3 0 0 0 0.6785 1 22953 22953 2.8433 0.3448 1 24962000 24461 1549 16591 16910 28865 28865 -0.028716990220800653 ISEHHEERWAY 11 Unmodified _ISEHHEERWAY_ 0 0 0 REV__ENSG00000189045|ENST00000601380|ANKDD1B REV__ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 729.333984375 2 728.83384 1455.65313 0.41527 0.00030267 -0.53869 -0.00039261 -0.12341 -8.9948E-05 728.8333904707305 45.955 0.31184 45.955 45.819 46.131 0 44 14 4 0 0 0 0.6889 1 25046 25046 5.2969 0.39987 1 22518000 + 24462 23754 16592 16911 28866 28866 -0.05647404044270843 ISEIEKLLY 9 Unmodified _ISEIEKLLY_ 0 0 0 REV__ENSG00000183439|ENST00000710271|TRIM61 REV__ENSG00000183439|ENST00000710271|TRIM61 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2595825195312 2 554.31844 1106.62233 0.46271 0.00025649 -1.073 -0.00059478 -0.61028 -0.00033829 554.3177837944614 63.996 0.22153 63.996 63.879 64.1 0 13 8 2 0 0 0 0.18882 1 35702 35702 10.824 0 1 1227000 + 24463 23347 16593 16912 28867 28867 0.07328049588772956 ISEIITLNY 9 Unmodified _ISEIITLNY_ 0 0 0 REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2943115234375 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 77.103 1 77.103 76.603 77.603 0 0 0 0 0.7453 1 42865 42865 7.9102 0 1 + 24464 22769 16594 16913 28868 28868 0.04567190037596447 ISEIITLNY 9 Unmodified _ISEIITLNY_ 0 0 0 REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 REV__nc|ENSG00000174130|Q9Y2C9-2|TLR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2938232421875 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 78.53 1 78.044 77.544 78.544 -0.48596 0 0 0 0.6306 1 43012 43012 11.64 0 1 + 24465 22769 16594 16913 28869 28869 0.04567190037596447 ISEINVKIF 9 Unmodified _ISEINVKIF_ 0 0 0 nc|ENSG00000168778|Q96GX1-2|TCTN2;ENSG00000168778|ENST00000303372|TCTN2 nc|ENSG00000168778|Q96GX1-2|TCTN2 nc|ENSG00000168778|Q96GX1-2|TCTN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8134765625 2 531.813325 1061.6121 0.94037 0.0005001 -2.894 -0.0015391 -1.9536 -0.001039 531.8139311077248 91.216 0.38674 91.252 91.04 91.426 0.036499 22 14 2 0 0 0 0.10734 1 50721 50721 32.305 6.9062 1 9537700 24466 7798 16595 16914 28870 28870 0.08375486654176711 ISEIVIDFL 9 Unmodified _ISEIVIDFL_ 0 0 0 ENST00000436966.1_1_1:226059699-226065338:-|nuORF;ENST00000366835.7_1_1:226059699-226067035:-|nuORF ENST00000436966.1_1_1:226059699-226065338:-|nuORF ENST00000436966.1_1_1:226059699-226065338:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8076171875 2 524.799883 1047.58521 0.34255 0.00017977 1.1424 0.00059951 1.4849 0.00077928 524.8004455448142 99.796 0.36475 93.621 93.49 93.855 -6.1757 75 25 4 0 0 0 0.14602 1 66677 66677 28.487 5.3384 1 1305000000 24467 12211 16596 16915 28871 28871 0.06332378042998243 ISEMNMDYTI 10 Unmodified _ISEMNMDYTI_ 0 0 0 ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ ENSG00000268089|ENST00000598523|GABRQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.76513671875 2 608.764857 1215.51516 -0.058517 -3.5623E-05 0.060054 3.6559E-05 0.0015367 9.3551E-07 608.7651924938573 65.393 0.28078 65.393 65.247 65.528 0 34 10 4 0 0 0 0.60623 1 36452 36452 10.824 0 1 4754800 24468 10871 16597 16916 28872 28872 -0.08397611679424699 ISFKEVIEAI 10 Unmodified _ISFKEVIEAI_ 0 0 0 nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 MSMS AL20221201_MKP_PDAC_01 4 574.8298950195312 2 574.831714 1147.64888 NaN NaN NaN NaN NaN NaN NaN 95.78 1 89.604 89.104 90.104 -6.1757 0 0 0 0.81856 1 63446 63446 11.495 2.1116 1 24469 9073 16598 16917 28873 28873 0.0809573848009677 ISFLAHLFM 9 Unmodified _ISFLAHLFM_ 0 0 0 ENST00000457388.1_1_10:37627086-37627398:+|nuORF ENST00000457388.1_1_10:37627086-37627398:+|nuORF ENST00000457388.1_1_10:37627086-37627398:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7922973632812 2 539.791338 1077.56812 NaN NaN NaN NaN NaN NaN NaN 15.962 1 15.967 15.467 16.467 0.0050564 0 0 0 0.85261 1 7980 7980 0.6015 0 1 24470 13612 16599 16918 28874 28874 0.03244178956219912 ISFLILKFA 9 Unmodified _ISFLILKFA_ 0 0 0 REV__ENST00000271375.6_1_1:168212619-168212721:+|nuORF REV__ENST00000271375.6_1_1:168212619-168212721:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.7689819335938 2 526.331153 1050.64775 0.33607 0.00017688 0.57176 0.00030094 0.90783 0.00047782 526.3313310951122 99.774 0.1132 93.598 93.525 93.638 -6.1757 17 7 3 0 0 0 0.19613 1 66477 66477 7.9102 0 1 47670000 + 24471 25136 16600 16919 28875 28875 0.12445568901853221 ISFMHSSFQP 10 Unmodified _ISFMHSSFQP_ 0 0 0 ENSG00000232263|ENST00000416044|KRTAP25-1 ENSG00000232263|ENST00000416044|KRTAP25-1 ENSG00000232263|ENST00000416044|KRTAP25-1 MSMS AL20221201_MKP_PDAC_01 4 394.1860961914062 3 394.186703 1179.53828 NaN NaN NaN NaN NaN NaN NaN 29.198 1 25.896 25.396 26.396 -3.3016 0 0 0 0.47175 1 16371 16371 18.721 1.6726 1 24472 10625 16601 16920 28876 28876 -0.04430804779804021 ISFNFWYRL 9 Unmodified _ISFNFWYRL_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.8847961425781 3 415.885353 1244.63423 0.097956 4.0738E-05 0.67808 0.000282 0.77603 0.00032274 415.88542270488097 25.887 0.084238 25.914 25.848 25.932 0.026951 7 4 2 0 0 0 0.46501 1 13418 13418 9.3831 1.2276 1 3867500 24473 874 16602 16921 28877 28877 0.021697111225876142 ISFPSTAVVHV 11 Unmodified _ISFPSTAVVHV_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2168884277344 3 386.21688 1155.62881 0.63519 0.00024532 0.83225 0.00032143 1.4674 0.00056675 386.2171410547782 49.466 0.65777 49.417 49.065 49.723 -0.048828 77 32 3 0 0 0 0.71938 1 26810 26810 2.4348 0.8425 1 5267000 + 24474 20399 16603 16922 28878 28878 0.057219875401415266 ISFQIEKLV 9 Unmodified _ISFQIEKLV_ 0 0 0 ENSG00000124157|ENST00000372769|SEMG2 ENSG00000124157|ENST00000372769|SEMG2 ENSG00000124157|ENST00000372769|SEMG2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2486572265625 2 538.82115 1075.62775 0.53753 0.00028964 1.8449 0.00099408 2.3825 0.0012837 538.8223547337278 64.367 0.40646 63.881 63.696 64.102 -0.48512 38 18 3 0 0 0 0.18882 1 35054 35054 10.824 1.4765 1 3177000 24475 3751 16604 16923 28879 28879 0.0929577317122039 ISFTLYLI 8 Unmodified _ISFTLYLI_ 0 0 0 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2 ENST00000467923.5_1_20:5107766-5163790:+|nuORF ENST00000467923.5_1_20:5107766-5163790:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 969.5679931640625 1 969.565546 968.55827 0.99755 0.00096719 -0.84966 -0.0008238 0.14789 0.00014339 969.5650033387158 101.14 0.11586 94.965 94.889 95.004 -6.1757 13 6 3 0 0 0 0.11943 1 67773 67773 93.883 7.7621 1 53850000 24476 1940 16605 16924 28880 28880 0.07273314222470617 ISFVPISIN 9 Unmodified _ISFVPISIN_ 0 0 0 REV__nc|ENSG00000020922|P49959-2|MRE11 REV__nc|ENSG00000020922|P49959-2|MRE11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2877197265625 2 495.286943 988.559333 0.8341 0.00041312 0.26869 0.00013308 1.1028 0.0005462 495.28709894936014 76.034 1.05 69.858 69.009 70.059 -6.1757 76 56 2 0 0 0 0.08691 1 49741 49741 36.127 0 1 12830000 + 24477 17108 16606 16925 28881 28881 0.06459528591381059 ISGDYNIL 8 Unmodified _ISGDYNIL_ 0 0 0 ENST00000368140.5_1_1:158901395-158901464:+|nuORF ENST00000368140.5_1_1:158901395-158901464:+|nuORF ENST00000368140.5_1_1:158901395-158901464:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4553833007812 1 894.456724 893.449448 0.4833 0.00043229 -0.12243 -0.00010951 0.36087 0.00032278 894.4561661910953 53.978 0.21191 53.978 53.82 54.032 0 12 9 2 0 0 0 0.34916 1 29923 29923 49.933 9.9757 1 696180 24478 12256 16607 16926 28882 28882 -0.0015389674781545182 ISGERTSELR 10 Unmodified _ISGERTSELR_ 0 0 0 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 MSMS AL20221201_MKP_PDAC_01 4 383.2062683105469 3 383.207043 1146.5993 NaN NaN NaN NaN NaN NaN NaN 95.361 1 89.185 88.685 89.685 -6.1757 0 0 0 0.99248 1 63160 63160 0.62683 0 1 24479 6266 16608 16927 28883 28883 0.031864235239936534 ISGEWHQF 8 Unmodified _ISGEWHQF_ 0 0 0 REV__nc|ENSG00000146521|Q9Y6Z2|LINC01558 REV__nc|ENSG00000146521|Q9Y6Z2|LINC01558 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2388305664062 2 502.235242 1002.45593 0.90875 0.0004564 2.3386 0.0011746 3.2474 0.001631 502.2370279205518 47.841 0.22959 47.841 47.686 47.916 0 18 10 2 0 0 0 0.63229 1 26191 26191 23.148 0.41214 1 4676300 + 24480 29687 16609 16928 28884 28884 -0.04519958796424817 ISGIMFNLL 9 Unmodified _ISGIMFNLL_ 0 0 0 REV__ENST00000554754.5_1_14:59951243-59961809:+|nuORF REV__ENST00000554754.5_1_14:59951243-59961809:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2823181152344 2 504.283346 1006.55214 1.3664 0.00068907 -1.2865 -0.00064877 0.079907 4.0296E-05 504.28277808388964 95.584 0.30196 89.409 89.282 89.584 -6.1757 37 18 3 0 0 0 0.14602 1 63295 63295 28.487 1.6032 1 24189000 + 24481 28744 16610 16929 28885 28885 0.049124727192975115 ISGKRMERIL 10 Unmodified _ISGKRMERIL_ 0 0 0 REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E MULTI-SECPEP AL20221201_MKP_PDAC_01 4 401.5406188964844 3 401.57278 1201.69651 0.97725 0.00039244 0.16487 6.6206E-05 1.1421 0.00045864 401.5728557122971 38.196 0.37595 33.827 33.636 34.012 -4.3689 41 22 2 0 0 0 0.23922 1 22572 22572 1.9064 0 1 22365000 + 24482 20947 16611 16930 28886 28886 0.10373114199319389 ISGMSHLVVTL 11 Unmodified _ISGMSHLVVTL_ 0 0 0 ENST00000443660.5_1_22:19420159-19420315:+|nuORF ENST00000443660.5_1_22:19420159-19420315:+|nuORF ENST00000443660.5_1_22:19420159-19420315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2175598144531 3 386.218003 1155.63218 0.24042 9.2855E-05 -1.1007 -0.0004251 -0.86024 -0.00033224 386.2173988257028 48.593 0.41242 48.55 48.359 48.772 -0.04369 56 20 4 0 0 0 0.71341 1 26235 26235 1.2148 0 1 5248300 24483 13428 16612 16931 28887 28887 0.06058914322511555 ISGMSHLVVTL 11 Unmodified _ISGMSHLVVTL_ 0 0 0 ENST00000443660.5_1_22:19420159-19420315:+|nuORF ENST00000443660.5_1_22:19420159-19420315:+|nuORF ENST00000443660.5_1_22:19420159-19420315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2174377441406 3 386.218003 1155.63218 -0.12185 -4.706E-05 -0.23422 -9.0461E-05 -0.35607 -0.00013752 386.2179050384824 54.138 0.34088 54.071 53.882 54.223 -0.066936 28 16 3 0 0 0 0.71341 1 29390 29390 1.2148 0 1 3129700 24484 13428 16612 16931 28888 28888 0.06058914322511555 ISGNMYDTWF 10 Unmodified _ISGNMYDTWF_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8472900390625 3 411.846346 1232.51721 0.11983 4.935E-05 -0.2776 -0.00011433 -0.15777 -6.4977E-05 411.84652094732627 50.606 0.29047 50.606 50.433 50.724 0 40 13 5 0 0 0 0.67755 1 27880 27880 5.4027 0 1 6493100 + 24485 22334 16613 16932 28889 28889 -0.08974814879343285 ISGPPGQP 8 Unmodified _ISGPPGQP_ 0 0 0 ENST00000483338.1_1_X:107826116-107869594:+|nuORF;nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5 ENST00000483338.1_1_X:107826116-107869594:+|nuORF ENST00000483338.1_1_X:107826116-107869594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8524169921875 2 376.700503 751.386454 -0.59967 -0.0002259 1.098 0.00041361 0.4983 0.00018771 376.7007867843756 26.857 0.16949 26.857 26.761 26.93 0 13 7 2 0 0 0 0.76266 1 13784 13784 11.64 0 1 848330 24486 9630 16614 16933 28890 28890 0.0008158225481338377 ISGSLTPVF 9 Unmodified _ISGSLTPVF_ 0 0 0 ENSG00000164867|ENST00000297494|NOS3;nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3 ENSG00000164867|ENST00000297494|NOS3 ENSG00000164867|ENST00000297494|NOS3 MSMS AL20221201_MKP_PDAC_01 4 460.7580871582031 2 460.758018 919.501483 NaN NaN NaN NaN NaN NaN NaN 31.39 1 27.694 27.194 28.194 -3.6958 0 0 0 0.23581 1 17771 17771 28.487 0 1 24487 7254 16615 16934 28891 28891 0.03851266665958519 ISGTLSSYY 9 Unmodified _ISGTLSSYY_ 0 0 0 ENSG00000170689|ENST00000311177|HOXB9 ENSG00000170689|ENST00000311177|HOXB9 ENSG00000170689|ENST00000311177|HOXB9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.8631286621094 2 495.742565 989.470577 NaN NaN NaN NaN NaN NaN NaN 49.675 1 49.675 49.175 50.175 0 0 0 0 0.46757 1 27351 27351 16.942 1.1741 1 24488 8016 16616 16935 28892 28892 -0.024579314389484352 ISGWHGDNM 9 Unmodified _ISGWHGDNM_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2 ENSG00000101210|ENST00000217182|EEF1A2 ENSG00000101210|ENST00000217182|EEF1A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2737121582031 2 508.716359 1015.41816 0.88835 0.00045192 1.0696 0.00054412 1.9579 0.00099604 508.71683725230844 94.811 0.64992 88.635 88.299 88.949 -6.1757 66 36 2 0 0 0 0.18882 1 62980 62980 6.7232 0 1 12455000 24489 1933 16617 16936 28893 28893 -0.08892793053553305 ISHMVASCPL 10 Unmodified _ISHMVASCPL_ 0 0 0 ENSG00000131914|ENST00000326279|LIN28A ENSG00000131914|ENST00000326279|LIN28A ENSG00000131914|ENST00000326279|LIN28A MSMS AL20221201_MKP_PDAC_01 4 353.1781005859375 3 353.17715 1056.50962 NaN NaN NaN NaN NaN NaN NaN 46.672 1 41.592 41.092 42.092 -5.0805 0 0 0 0.64375 1 28876 28876 12.175 1.3752 1 24490 4359 16618 16937 28894 28894 -0.016372456805811453 ISHMVASCPL 10 Unmodified _ISHMVASCPL_ 0 0 0 ENSG00000131914|ENST00000326279|LIN28A ENSG00000131914|ENST00000326279|LIN28A ENSG00000131914|ENST00000326279|LIN28A MSMS AL20221201_MKP_PDAC_01 4 353.1769409179688 3 353.17715 1056.50962 NaN NaN NaN NaN NaN NaN NaN 46.977 1 41.897 41.397 42.397 -5.0805 0 0 0 0.64375 1 29104 29104 12.175 0 1 24491 4359 16618 16937 28895 28895 -0.016372456805811453 ISHPDVGRY 9 Unmodified _ISHPDVGRY_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2656860351562 2 522.267073 1042.51959 NaN NaN NaN NaN NaN NaN NaN 47.748 1 47.396 46.896 47.896 -0.3526 0 0 0 0.82739 1 25602 25602 4.3292 1.44 1 24492 16205 16619 16938 28896 28896 3.4016406743830885E-05 ISHPVTQSF 9 Unmodified _ISHPVTQSF_ 0 0 0 REV__ENST00000342427.6_1_20:32379592-32379847:+|nuORF REV__ENST00000342427.6_1_20:32379592-32379847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2648010253906 2 508.263999 1014.51345 0.74557 0.00037894 -0.8954 -0.0004551 -0.14983 -7.6154E-05 508.26394909436027 36.779 0.29639 32.496 32.353 32.65 -4.2835 33 17 2 0 0 0 0.25681 1 21470 21470 19.257 1.1106 1 10425000 + 24493 25720 16620 16939 28897 28897 0.006768834091417375 ISHQRPQQS 9 Unmodified _ISHQRPQQS_ 0 0 0 ENST00000531483.1_1_8:38125156-38125219:-|nuORF ENST00000531483.1_1_8:38125156-38125219:-|nuORF ENST00000531483.1_1_8:38125156-38125219:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.8713073730469 3 360.856345 1079.5472 1.1002 0.00039703 -0.77109 -0.00027825 0.32915 0.00011877 360.8561522943861 27.652 0.19344 24.616 24.541 24.734 -3.0365 14 9 2 0 0 0 0.21021 1 15329 15329 4.5289 0 1 5657400 24494 14907 16621 16940 28898 28898 0.010613049008952657 ISIAKAGIT 9 Unmodified _ISIAKAGIT_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.2743225097656 2 437.273835 872.533118 0.71887 0.00031434 0.19235 8.4108E-05 0.91122 0.00039845 437.2738916750938 43.871 0.38392 39.106 38.919 39.302 -4.7648 40 24 2 0 0 0 0.07087 1 26692 26692 39.95 5.0176 1 17876000 24495 1787 16622 16941 28899 28899 0.0917525941989652 ISICCPCDL 9 Unmodified _ISICCPCDL_ 0 0 0 REV__ENST00000330137.11_1_17:57188831-57189044:-|nuORF REV__ENST00000330137.11_1_17:57188831-57189044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7101135253906 2 483.708299 965.402045 0.62727 0.00030342 0.41821 0.00020229 1.0455 0.00050571 483.7085137019696 49.803 0.31573 49.803 49.671 49.986 0 35 14 3 0 0 0 0.2143 1 27422 27422 21.747 0 1 10796000 + 24496 25588 16623 16942 28900 28900 -0.08203958606338801 ISIEKGQFNHL 11 Unmodified _ISIEKGQFNHL_ 0 0 0 REV__nc|ENSG00000136504|O95251-4|KAT7 REV__nc|ENSG00000136504|O95251-4|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.3497314453125 2 643.348594 1284.68264 -0.02843 -1.829E-05 1.837 0.0011818 1.8086 0.0011635 643.3496468825073 101.7 0.063263 101.7 101.66 101.73 0 6 2 3 0 0 0 0.6889 1 56111 56111 5.2969 1.7004 1 1203100 + 24497 20166 16624 16943 28901 28901 0.05168159971867681 ISIEKGQFNHL 11 Unmodified _ISIEKGQFNHL_ 0 0 0 REV__nc|ENSG00000136504|O95251-4|KAT7 REV__nc|ENSG00000136504|O95251-4|KAT7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 643.348594 1284.68264 -0.02843 -1.829E-05 1.837 0.0011818 1.8086 0.0011635 643.3496468825073 101.7 0.063263 101.7 101.66 101.73 0 0 0 NaN 5.2969 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 1203100 + 24498 20166 16624 16943 0.05168159971867681 ISIGELALCI 10 Unmodified _ISIGELALCI_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2939453125 2 516.293911 1030.57327 0.9163 0.00047308 -2.1278 -0.0010986 -1.2115 -0.0006255 516.2923157891696 58.315 0.35586 52.24 52.031 52.387 -6.0745 39 18 3 0 0 0 0.27276 1 37429 37429 29.082 2.1979 1 16523000 24499 9690 16625 16944 28902 28902 0.05920438028147146 ISIMYWKF 8 Unmodified _ISIMYWKF_ 0 0 0 REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.28515625 2 544.285889 1086.55722 0.20757 0.00011298 -0.75512 -0.000411 -0.54755 -0.00029802 544.2853712940721 75.996 0.45641 75.996 75.791 76.248 0 54 20 3 0 0 0 0.5953 1 42309 42309 26.341 8.1949 1 17003000 + 24500 27356 16626 16945 28903 28903 0.017407765819143606 ISIMYWKF 8 Unmodified _ISIMYWKF_ 0 0 0 REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF REV__ENST00000463645.1_1_2:132491378-132509159:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2855834960938 2 544.285889 1086.55722 0.046481 2.5299E-05 0.17189 9.3555E-05 0.21837 0.00011885 544.2855911214438 84.733 0.84443 78.558 78.206 79.05 -6.1757 120 49 4 0 0 0 0.67481 1 55866 55866 19.439 1.2926 1 89363000 + 24501 27356 16626 16945 28904 28904 0.017407765819143606 ISKGEGPL 8 Unmodified _ISKGEGPL_ 0 0 0 REV__ENSG00000137502|ENST00000527633|RAB30 REV__ENSG00000137502|ENST00000527633|RAB30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.7290344238281 2 400.729261 799.443968 -0.45437 -0.00018208 0.34566 0.00013852 -0.10871 -4.3562E-05 400.7294681792171 24.728 0.31353 24.728 24.572 24.885 0 41 17 3 0 0 0 0.57045 2 12697 12595;12697 28.487 6.7402 1 3771100 + 24502 20247 16627 16946 28905;28906 28906 0.03622424460365892 ISKIWEEY 8 Unmodified _ISKIWEEY_ 0 0 0 ENST00000430210.1_1_1:227681388-227682478:-|nuORF ENST00000430210.1_1_1:227681388-227682478:-|nuORF ENST00000430210.1_1_1:227681388-227682478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2745971679688 2 534.274032 1066.53351 0.70012 0.00037406 1.0771 0.00057549 1.7773 0.00094955 534.2744682371282 81.471 0.52357 80.978 80.792 81.316 -0.49247 42 21 3 0 0 0 0.80143 1 44673 44673 5.7604 5.7604 1 2134800 24503 13233 16628 16947 28907 28907 0.0029063434908493946 ISKREQLEQQ 10 Unmodified _ISKREQLEQQ_ 0 0 0 ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P;ENST00000538033.2_1_2:114353729-114354265:+|nuORF;ENST00000461007.6_1_X:155252382-155252984:+|nuORF;ENST00000482170.6_1_X:155252010-155252984:+|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;ENSG00000182484|ENST00000359512|WASH6P ENST00000557932.5_1_15:102513813-102516466:+|nuORF ENST00000557932.5_1_15:102513813-102516466:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.84130859375 2 629.841133 1257.66771 NaN NaN NaN NaN NaN NaN NaN 96.032 1 96.032 95.532 96.532 0 0 0 0 0.97592 1 53072 53072 3.2813 0 1 24504 8970 16629 16948 28908 28908 0.049186681038463576 ISKSHRLRP 9 Unmodified _ISKSHRLRP_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2251281738281 3 365.22448 1092.65161 1.6867 0.00061602 -1.3096 -0.00047831 0.37704 0.00013771 365.2237840918666 32.271 0.68567 28.415 28.11 28.796 -3.8562 69 38 3 0 0 0 0.19127 1 18405 18405 17.443 0.87677 1 24933000 + 24505 21605 16630 16949 28909 28909 0.10899051448268438 ISKSHVSTTY 10 Unmodified _ISKSHVSTTY_ 0 0 0 REV__ENST00000392981.6_1_3:142133056-142136003:-|nuORF REV__ENST00000392981.6_1_3:142133056-142136003:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7921142578125 2 561.793121 1121.57169 -0.15033 -8.4455E-05 -0.46512 -0.0002613 -0.61546 -0.00034576 561.7928804417021 30.827 0.22236 30.827 30.67 30.892 0 18 10 2 0 0 0 0.32072 1 16021 16021 26.268 2.4784 1 2983400 + 24506 26409 16631 16950 28910 28910 0.0157652026375672 ISLAEMFARSH 11 Unmodified _ISLAEMFARSH_ 0 0 0 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 ENSG00000145217|ENST00000398516|SLC26A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.217041015625 3 421.216774 1260.62849 0.19061 8.0287E-05 0.63671 0.00026819 0.82732 0.00034848 421.21689128524037 56.595 0.33741 56.526 56.32 56.658 -0.068737 34 16 3 0 0 0 0.61059 1 30765 30765 5.8681 0 1 17749000 24507 5676 16632 16951 28911 28911 0.008602445486303623 ISLCGGARATL 11 Unmodified _ISLCGGARATL_ 0 0 0 ENST00000367627.7_1_1:179050520-179050766:+|nuORF ENST00000367627.7_1_1:179050520-179050766:+|nuORF ENST00000367627.7_1_1:179050520-179050766:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2898559570312 2 531.292233 1060.56991 NaN NaN NaN NaN NaN NaN NaN 45.325 1 45.001 44.501 45.501 -0.32425 0 0 0 0.69464 1 24209 24209 17.113 1.2657 1 24508 12246 16633 16952 28912 28912 0.042051879741620724 ISLCIQAQN 9 Unmodified _ISLCIQAQN_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.257568359375 2 495.257859 988.501166 0.28386 0.00014059 -1.1107 -0.0005501 -0.82687 -0.00040952 495.2575992852528 66.427 0.25152 65.944 65.838 66.09 -0.48323 15 11 2 0 0 0 0.49272 1 36334 36334 7.9102 0 1 1049600 24509 10211 16634 16953 28913 28913 0.006455236744386639 ISLDQIDLL 9 Unmodified _ISLDQIDLL_ 0 0 0 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 ENSG00000146143|ENST00000615550|PRIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2957153320312 2 515.294965 1028.57538 0.9491 0.00048907 0.57069 0.00029407 1.5198 0.00078314 515.2950950359659 91.59 0.46815 85.414 85.127 85.596 -6.1757 36 25 2 0 0 0 0.042911 1 60518 60518 48.346 0 1 6640100 24510 5758 16635 16954 28914 28914 0.06223190037621862 ISLFWEKRYQT 11 Unmodified _ISLFWEKRYQT_ 0 0 0 ENST00000579860.5_1_17:62504766-62506299:+|nuORF ENST00000579860.5_1_17:62504766-62506299:+|nuORF ENST00000579860.5_1_17:62504766-62506299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9303283691406 3 490.92951 1469.7667 0.88557 0.00043475 0.59639 0.00029279 1.482 0.00072754 491.2642868033773 81.726 0.73831 75.551 75.247 75.986 -6.1757 142 41 4 0 0 0 0.57006 1 53849 53849 12.856 6.9878 1 65807000 24511 15553 16636 16955 28915 28915 0.05060691068752021 ISLGSIEAAI 10 Unmodified _ISLGSIEAAI_ 0 0 0 REV__ENSG00000167971|ENST00000343516|CASKIN1 REV__ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.5576782226562 1 973.556438 972.549162 -0.058388 -5.6844E-05 -0.3256 -0.00031699 -0.38399 -0.00037383 973.5557488483848 51.837 0.26346 51.837 51.689 51.953 0 24 11 3 0 0 0 0.035736 2 28614 28614;28723 65.235 9.9833 1 6299500 + 24512 22268 16637 16956 28916;28917 28916 0.061789208661252815 ISLGSIEAAI 10 Unmodified _ISLGSIEAAI_ 0 0 0 REV__ENSG00000167971|ENST00000343516|CASKIN1 REV__ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2822265625 2 487.281857 972.549162 0.72348 0.00035254 0.048711 2.3736E-05 0.77219 0.00037627 487.2818108297464 52.275 0.35378 51.842 51.631 51.985 -0.43367 37 17 4 0 0 0 0.54684 1 28300 28300 13.906 1.3745 1 13115000 + 24513 22268 16637 16956 28918 28918 0.061789208661252815 ISLGSIEAAI 10 Unmodified _ISLGSIEAAI_ 0 0 0 REV__ENSG00000167971|ENST00000343516|CASKIN1 REV__ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2823181152344 2 487.281857 972.549162 0.351 0.00017104 0.60703 0.0002958 0.95803 0.00046683 487.28212768467864 58.16 0.82673 52.133 51.819 52.645 -6.0275 129 45 4 0 0 0 0.1028 1 37199 37199 46.021 0.32134 1 642070000 + 24514 22268 16637 16956 28919 28919 0.061789208661252815 ISLIGMPKEI 10 Unmodified _ISLIGMPKEI_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15 REV__ENSG00000144821|ENST00000693548|MYH15 MSMS AL20221201_MKP_PDAC_01 4 367.5519714355469 3 367.550982 1099.63112 NaN NaN NaN NaN NaN NaN NaN 78.602 1 72.426 71.926 72.926 -6.1757 0 0 0 0.68942 1 51462 51462 10.899 0 1 + 24515 20738 16638 16957 28920 28920 0.08528699953581054 ISLIVLQYNE 10 Unmodified _ISLIVLQYNE_ 0 0 0 REV__nc|ENSG00000102081|Q06787-11|FMR1 REV__nc|ENSG00000102081|Q06787-11|FMR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8023681640625 2 596.334621 1190.65469 -0.014072 -8.3917E-06 -2.5746 -0.0015353 -2.5887 -0.0015437 596.3339104909273 62.358 0.38056 62.358 62.23 62.611 0 31 25 2 0 0 0 0.23057 1 34803 34803 8.7454 0 1 5454900 + 24516 29540 16639 16958 28921 28921 0.06698836991745338 ISLIWIDHR 9 Unmodified _ISLIWIDHR_ 0 0 0 ENSG00000196099|ENST00000309154|OR6M1 ENSG00000196099|ENST00000309154|OR6M1 ENSG00000196099|ENST00000309154|OR6M1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5353393554688 3 384.888986 1151.64513 1.3786 0.00053062 2.8747 0.0011064 4.2533 0.0016371 384.89160901508905 90.432 0.15228 84.256 84.203 84.355 -6.1757 13 8 2 0 0 0 0.21254 1 59805 59805 6.6304 0 1 5176000 24517 9759 16640 16959 28922 28922 0.07537113496891834 ISLLLLLLPA 10 Unmodified _ISLLLLLLPA_ 0 0 0 REV__ENST00000463694.1_1_3:58193943-58196633:-|nuORF REV__ENST00000463694.1_1_3:58193943-58196633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1065.735473632812 1 1065.7282 1064.72092 0.69795 0.00074383 3.0228 0.0032215 3.7207 0.0039653 1065.7334388569923 50.048 0.25935 49.656 49.532 49.791 -0.3923 16 12 2 0 0 0 0.71123 1 26904 26904 1.6526 0 1 2553200 + 24518 21801 16641 16960 28923 28923 0.19114697624468135 ISLLRYFMMDR 11 Unmodified _ISLLRYFMMDR_ 0 0 0 REV__ENST00000561920.5_1_16:70154383-70162781:+|nuORF REV__ENST00000561920.5_1_16:70154383-70162781:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 722.8771362304688 2 722.875607 1443.73666 NaN NaN NaN NaN NaN NaN NaN 88.962 1 89.01 88.51 89.51 0.047852 0 0 0 0.81193 1 49492 49492 11.495 0.6952 1 + 24519 28851 16642 16961 28924 28924 0.03254292807514503 ISLNLPEV 8 Unmodified _ISLNLPEV_ 0 0 0 REV__ENST00000397764.7_2_7:112758149-112758596:-|nuORF REV__ENST00000397764.7_2_7:112758149-112758596:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.511962890625 1 884.50876 883.501483 -0.3336 -0.00029507 0.38234 0.00033818 0.048739 4.311E-05 884.509149938861 84.82 0.69125 78.644 78.3 78.992 -6.1757 75 40 2 0 0 0 0.079485 1 55997 55997 108 6.2751 1 38204000 + 24520 26544 16643 16962 28925 28925 0.055072666659384595 ISLQFKNLI 9 Unmodified _ISLQFKNLI_ 0 0 0 REV__ENST00000557374.1_1_14:52957560-53019203:-|nuORF REV__ENST00000557374.1_1_14:52957560-53019203:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2224426269531 3 359.221853 1074.64373 0.94018 0.00033773 -0.25431 -9.1353E-05 0.68587 0.00024638 359.2218367468564 24.348 0.34975 21.521 21.392 21.742 -2.8273 48 19 3 0 0 0 0.52844 1 13353 13353 5.7319 0.83484 1 18044000 + 24521 28787 16644 16963 28926 28926 0.10939479408125408 ISLVQQQQL 9 Unmodified _ISLVQQQQL_ 0 0 0 REV__ENSG00000100393|ENST00000263253|EP300 REV__ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8060302734375 2 528.806031 1055.59751 0.15102 7.986E-05 -0.20996 -0.00011103 -0.058944 -3.117E-05 528.8058674918019 48.954 0.36686 48.954 48.761 49.128 0 44 17 3 0 0 0 0.34134 1 26954 26954 15.847 0 1 18132000 + 24522 18059 16645 16964 28927 28927 0.07193414506036788 ISLWKQPE 8 Unmodified _ISLWKQPE_ 0 0 0 REV__ENST00000568223.6_1_16:767979-768486:+|nuORF REV__ENST00000568223.6_1_16:767979-768486:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7779235839844 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 80.938 1 80.938 80.438 81.438 0 0 0 0 0.97444 1 44933 44933 2.5775 0.51773 1 + 24523 28941 16646 16965 28928 28928 0.03914357931569157 ISLYVSIEL 9 Unmodified _ISLYVSIEL_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.8003540039062 2 518.799883 1035.58521 0.33838 0.00017555 0.49893 0.00025884 0.83731 0.0004344 518.8001055255864 80.52 0.35044 80.52 80.335 80.686 0 39 16 3 0 0 0 0.14602 1 44706 44706 28.487 0 1 2479100 24524 3365;16150 16647 16966 28929 28929 0.06884378042991557 ISLYVSIEL 9 Unmodified _ISLYVSIEL_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.8004150390625 2 518.799883 1035.58521 0.73585 0.00038176 -0.82295 -0.00042695 -0.087101 -4.5188E-05 518.7994310801076 81.008 0.34962 80.516 80.292 80.641 -0.49247 45 16 4 0 0 0 0.14602 1 44316 44316 28.487 0 1 11923000 24525 3365;16150 16647 16966 28930 28930 0.06884378042991557 ISLYVSIEL 9 Unmodified _ISLYVSIEL_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7998657226562 2 518.799883 1035.58521 0.16299 8.4559E-05 -0.13637 -7.075E-05 0.026616 1.3808E-05 518.7999163911511 80.387 0.25956 80.445 80.348 80.607 0.057587 16 11 2 0 0 0 0.06187 1 44419 44419 42.095 0 1 10325000 24526 3365;16150 16647 16966 28931 28931 0.06884378042991557 ISLYVSIEL 9 Unmodified _ISLYVSIEL_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-2|ATP10B;ENST00000521033.5_1_5:160061154-160212677:-|nuORF;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B;nc|ENSG00000118322|O94823-3|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8003540039062 2 518.799883 1035.58521 1.1893 0.00061702 -0.18641 -9.6708E-05 1.0029 0.00052031 518.7997220020795 88.457 0.71478 82.281 81.939 82.653 -6.1757 119 39 4 0 0 0 0.023164 2 58313 58313;58447 60.39 0 1 173720000 24527 3365;16150 16647 16966 28932;28933 28932 0.06884378042991557 ISMKAKVIFGN 11 Unmodified _ISMKAKVIFGN_ 0 0 0 ENST00000539911.5_1_10:18276521-18280152:+|nuORF;nc|ENSG00000148482|Q504Y0-2|SLC39A12 ENST00000539911.5_1_10:18276521-18280152:+|nuORF ENST00000539911.5_1_10:18276521-18280152:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.2333679199219 3 403.233765 1206.67946 NaN NaN NaN NaN NaN NaN NaN 7.7807 1 5.2988 4.7988 5.7988 -2.482 0 0 0 0.9428 1 3929 3929 0.50596 0.23694 1 24528 15025 16648 16967 28934 28934 0.08439193593471828 ISMKLCTWF 9 Unmodified _ISMKLCTWF_ 0 0 0 REV__ENST00000463896.5_1_16:11137909-11141197:+|nuORF REV__ENST00000463896.5_1_16:11137909-11141197:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7840576171875 2 564.782656 1127.55076 1.8584 0.0010496 -0.21049 -0.00011888 1.6479 0.00093069 565.2833622144182 92.565 0.44267 92.595 92.362 92.805 0.030197 43 16 4 0 0 0 0.57757 1 51481 51481 4.756 2.4533 1 8211400 + 24529 27362 16649 16968 28935 28935 -0.007914846411040344 ISMKTSGRSRL 11 Unmodified _ISMKTSGRSRL_ 0 0 0 REV__ENSG00000131097|ENST00000253410|HIGD1B REV__ENSG00000131097|ENST00000253410|HIGD1B MSMS AL20221201_MKP_PDAC_01 4 618.3461303710938 2 618.348071 1234.68159 NaN NaN NaN NaN NaN NaN NaN 90.271 1 84.096 83.596 84.596 -6.1757 0 0 0 0.63856 1 59615 59615 19.362 2.249 1 + 24530 19772 16650 16969 28936 28936 0.07363622331286024 ISMLLYRKHA 10 Unmodified _ISMLLYRKHA_ 0 0 0 REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF REV__ENST00000477040.1_1_1:36921391-36921985:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2376403808594 3 411.237509 1230.6907 0.14097 5.7972E-05 0.33367 0.00013722 0.47464 0.00019519 411.2376001283688 39.812 0.62519 39.817 39.483 40.108 0.0050545 71 29 3 0 0 0 0.71276 1 21087 21087 0.62683 0.17231 1 4740300 + 24531 19073 16651 16970 28937 28937 0.08458015687642728 ISMPDVDLHMK 11 Unmodified _ISMPDVDLHMK_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS AL20221201_MKP_PDAC_01 4 643.3230590820312 2 643.317591 1284.62063 NaN NaN NaN NaN NaN NaN NaN 56.506 1 50.529 50.029 51.029 -5.9769 0 0 0 0.52067 1 36064 36064 23.79 8.5413 1 24532 3826 16652 16971 28938 28938 -0.010296507631665008 ISMSRPVVI 9 Unmodified _ISMSRPVVI_ 0 0 0 ENST00000418775.1_1_X:51139469-51141200:+|nuORF ENST00000418775.1_1_X:51139469-51141200:+|nuORF ENST00000418775.1_1_X:51139469-51141200:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2973022460938 2 501.294245 1000.57394 NaN NaN NaN NaN NaN NaN NaN 57.446 1 57.446 56.946 57.946 0 0 0 0 0.56093 1 31966 31966 13.906 2.2658 1 24533 13074 16653 16972 28939 28939 0.07367277467881195 ISNDELQAV 9 Unmodified _ISNDELQAV_ 0 0 0 REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6 REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2532043457031 2 494.750921 987.48729 -0.4912 -0.00024302 -0.54657 -0.00027041 -1.0378 -0.00051344 494.75126363633643 33.879 0.3175 33.879 33.747 34.065 0 30 15 3 0 0 0 0.18521 1 17861 17861 16.942 0 1 5149600 + 24534 20452 16654 16973 28940 28940 -0.006954305530030069 ISNHQNSNRY 10 Unmodified _ISNHQNSNRY_ 0 0 0 ENSG00000148965|ENST00000278222|SAA4 ENSG00000148965|ENST00000278222|SAA4 ENSG00000148965|ENST00000278222|SAA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.29150390625 2 616.791975 1231.5694 -0.32434 -0.00020005 0.18825 0.00011611 -0.1361 -8.3943E-05 616.7921081419872 29.902 0.57002 29.902 29.793 30.363 0 70 29 4 0 0 0 0.56348 1 15486 15486 13.042 3.6593 1 6243700 24535 5977 16655 16974 28941 28941 -0.03712515421329954 ISNKSRETPLY 11 Unmodified _ISNKSRETPLY_ 0 0 0 nc|ENSG00000100628|Q96Q27-1|ASB2;ENSG00000100628|ENST00000555019|ASB2 nc|ENSG00000100628|Q96Q27-1|ASB2 nc|ENSG00000100628|Q96Q27-1|ASB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8448791503906 3 436.569981 1306.68811 -0.22879 -9.9882E-05 -0.96822 -0.0004227 -1.197 -0.00052258 436.5695013969825 24.383 0.20506 24.383 24.285 24.49 0 19 11 2 0 0 0 0.30558 1 12506 12506 2.4348 0.52841 1 1303700 24536 1858 16656 16975 28942 28942 0.04703838763657586 ISNKSRETPLY 11 Unmodified _ISNKSRETPLY_ 0 0 0 nc|ENSG00000100628|Q96Q27-1|ASB2;ENSG00000100628|ENST00000555019|ASB2 nc|ENSG00000100628|Q96Q27-1|ASB2 nc|ENSG00000100628|Q96Q27-1|ASB2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 436.569981 1306.68811 0.56062 0.00024475 -0.010187 -4.4475E-06 0.55043 0.0002403 436.5699863842605 27.632 0.1192 24.596 24.496 24.615 -3.0365 0.10628 0.00067121 NaN 2.4348 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 7627200 24537 1858 16656 16975 0.04703838763657586 ISNNYRKI 8 Unmodified _ISNNYRKI_ 0 0 0 ENST00000358273.8_2_17:29701813-29701876:+|nuORF ENST00000358273.8_2_17:29701813-29701876:+|nuORF ENST00000358273.8_2_17:29701813-29701876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.7879333496094 2 504.285266 1006.55598 0.3659 0.00018452 0.81491 0.00041095 1.1808 0.00059547 504.78783857444654 74.296 0.31772 74.34 74.182 74.499 0.043983 30 13 3 0 0 0 0.74163 1 40980 40980 13.508 0 1 1653700 24538 12126 16657 16976 28943 28943 0.0529627853737793 ISNPFLEF 8 Unmodified _ISNPFLEF_ 0 0 0 ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF ENST00000493579.1_1_3:180041073-180041484:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.8990478515625 1 966.49311 965.485833 0.33427 0.00032307 -0.052534 -5.0774E-05 0.28174 0.0002723 966.4930330552105 91.443 0.31931 90.948 90.756 91.076 -0.49457 28 14 3 0 0 0 0.80311 1 49909 49909 4.756 0.42677 1 968910 24539 14317 16658 16977 28944 28944 0.0017098014890279956 ISNRIHYNI 9 Unmodified _ISNRIHYNI_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.31005859375 2 565.309272 1128.60399 0.29782 0.00016836 0.25007 0.00014137 0.54789 0.00030973 565.3094880922109 78.063 0.39046 78.063 77.878 78.268 0 41 16 3 0 0 0 0.28047 1 43433 43433 18.135 0 1 3007700 24540 4609 16659 16978 28945 28945 0.04483352457418732 ISNVPYHR 8 Unmodified _ISNVPYHR_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2;REV__ENST00000552168.1_1_12:53456565-53457663:+|nuORF REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2354736328125 2 493.264333 984.514114 0.28359 0.00013988 -2.3934 -0.0011806 -2.1098 -0.0010407 493.26400388121107 59.278 0.31026 59.278 59.068 59.379 0 15 12 2 0 0 0 8.7369 1 33057 33057 8.5933 0.68312 1 1016000 + 24541 18734;28723 16660 16979 28946 28946 0.021237228488416804 ISPDLPDTI 9 Unmodified _ISPDLPDTI_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.281982421875 2 485.758215 969.501877 0.24275 0.00011792 2.6891 0.0013063 2.9319 0.0014242 485.75834354435733 63.919 0.64547 63.919 63.59 64.235 0 100 26 7 0 0 0 0.28047 1 35534 35534 18.135 1.1927 1 11192000 24542 8020 16661 16980 28947 28947 0.015906415951349118 ISPDSKVCL 9 Unmodified _ISPDSKVCL_ 0 0 0 TLE1|p.F590L|1|0.2|ENSG00000196781|chr9:81590864-81590864|G/T|missense_variant TLE1|p.F590L|1|0.2|ENSG00000196781|chr9:81590864-81590864|G/T|missense_variant TLE1|p.F590L|1|0.2|ENSG00000196781|chr9:81590864-81590864|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2525024414062 2 481.254785 960.495018 0.2851 0.00013721 -2.9699 -0.0014293 -2.6848 -0.0012921 481.25324810503906 58.887 0.34642 58.887 58.699 59.045 0 31 15 3 0 0 0 0.042911 1 32764 32764 48.346 6.2513 1 5515200 24543 30192 16662 16981 28948 28948 0.013190054429401243 ISPDYPLTL 9 Unmodified _ISPDYPLTL_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.775634765625 2 509.776408 1017.53826 0.33435 0.00017044 -0.43752 -0.00022304 -0.10317 -5.2593E-05 509.7764985816427 76.674 0.52747 76.674 76.468 76.996 0 56 28 3 0 0 0 0.2143 1 42751 42751 21.747 0 1 4025900 24544 5400 16663 16982 28949 28949 0.030195184918625273 ISPFSETVRI 10 Unmodified _ISPFSETVRI_ 0 0 0 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 ENSG00000183741|ENST00000407418|CBX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8192749023438 2 574.819138 1147.62372 0.29441 0.00016923 0.6928 0.00039823 0.98721 0.00056747 574.819575233758 75.714 0.40878 75.762 75.537 75.946 0.047943 32 18 2 0 0 0 0.48629 1 41813 41813 24.991 0 1 38384000 24545 9186 16664 16983 28950 28950 0.055816836775193224 ISPGRYFLL 9 Unmodified _ISPGRYFLL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3074951171875 2 533.30821 1064.60187 0.16621 8.864E-05 -0.82621 -0.00044063 -0.66001 -0.00035199 533.3076679372901 73.057 0.75529 73.099 72.761 73.516 0.041725 121 35 5 0 0 0 0.078314 3 40270 40166;40270;40380 38.176 10.547 1 448510000 24546 8296;16388 16665 16984 28951;28952;28953 28952 0.07214923719629951 ISPGRYFLL 9 Unmodified _ISPGRYFLL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.308837890625 2 533.30821 1064.60187 0.12279 6.5485E-05 0.64265 0.00034273 0.76544 0.00040822 533.3084635790599 93.372 1.0505 87.196 86.534 87.585 -6.1757 226 71 4 0 0 0 0.094149 4 61570 61392;61570;61699;61823 34.402 7.5181 1 1018399999.9999999 24547 8296;16388 16665 16984 28954;28955;28956;28957 28955 0.07214923719629951 ISPLQYNY 8 Unmodified _ISPLQYNY_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.7896118164062 2 499.2531 996.491647 0.8062 0.0004025 -2.0288 -0.0010129 -1.2226 -0.00061038 499.2527371558488 68.289 0.3625 62.113 61.957 62.32 -6.1757 34 21 2 0 0 0 8.7369 1 44664 44664 14.582 2.0501 1 20260000 24548 1750 16666 16985 28958 28958 -0.006739213394325816 ISPSLYAAP 9 Unmodified _ISPSLYAAP_ 0 0 0 nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 MSMS AL20221201_MKP_PDAC_01 4 459.7505187988281 2 459.750193 917.485833 NaN NaN NaN NaN NaN NaN NaN 62.789 1 56.613 56.113 57.113 -6.1757 0 0 0 0.10545 1 40533 40533 42.095 6.0504 1 24549 4789 16667 16986 28959 28959 0.023789801488987905 ISPTNTNVWKQ 11 Unmodified _ISPTNTNVWKQ_ 0 0 0 ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL ENSG00000171451|ENST00000310045|DSEL MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2290954589844 3 429.894577 1286.6619 0.95938 0.00041243 0.92005 0.00039552 1.8794 0.00080796 430.2294327461263 36.196 0.35 32.004 31.802 32.152 -4.1928 30 20 2 0 0 0 0.58245 1 21180 21180 12.228 2.4633 1 22191000 24550 8099 16668 16987 28960 28960 0.03003569592169697 ISPTPEKVSI 10 Unmodified _ISPTPEKVSI_ 0 0 0 REV__ENSG00000117868|ENST00000275418|ESYT2 REV__ENSG00000117868|ENST00000275418|ESYT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8082885742188 2 535.808239 1069.60193 0.12981 6.9553E-05 -2.2488 -0.0012049 -2.119 -0.0011354 535.8072572438538 20.619 0.18773 20.629 20.51 20.698 0.010553 13 7 2 0 0 0 0.65471 1 10516 10516 5.2969 1.3525 1 908940 + 24551 19127 16669 16988 28961 28961 0.06990878928968414 ISPTPEKVSI 10 Unmodified _ISPTPEKVSI_ 0 0 0 REV__ENSG00000117868|ENST00000275418|ESYT2 REV__ENSG00000117868|ENST00000275418|ESYT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 535.808239 1069.60193 0.12981 6.9553E-05 -2.2488 -0.0012049 -2.119 -0.0011354 535.8072572438538 20.619 0.18773 20.629 20.51 20.698 0.010553 0 0 NaN 5.2969 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 908940 + 24552 19127 16669 16988 0.06990878928968414 ISPWCYTMDP 10 Unmodified _ISPWCYTMDP_ 0 0 0 ENSG00000198670|ENST00000316300|LPA ENSG00000198670|ENST00000316300|LPA ENSG00000198670|ENST00000316300|LPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2341918945312 2 606.756835 1211.49912 0.672 0.00040774 4.1713 0.002531 4.8433 0.0029387 606.7604049645437 54.516 0.26562 54.516 54.398 54.664 0 24 11 3 0 0 0 0.22811 1 30334 30334 14.838 2.3067 1 1053800 24553 10119 16670 16989 28962 28962 -0.0981727312566818 ISQEALSVF 9 Unmodified _ISQEALSVF_ 0 0 0 ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C ENSG00000075223|ENST00000265361|SEMA3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2652282714844 2 497.266207 992.517862 0.25614 0.00012737 0.1413 7.0265E-05 0.39744 0.00019763 497.2660339184907 65.774 0.69723 65.774 65.394 66.091 0 66 32 3 0 0 0 0.39863 1 36764 36764 12.532 0.89125 1 7904300 24554 1146 16671 16990 28963 28963 0.02130347832053303 ISQEEKIY 8 Unmodified _ISQEEKIY_ 0 0 0 ENST00000471475.1_1_10:70666590-70666683:+|nuORF ENST00000471475.1_1_10:70666590-70666683:+|nuORF ENST00000471475.1_1_10:70666590-70666683:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2642211914062 2 505.263665 1008.51278 0.63608 0.00032139 -0.17971 -9.0801E-05 0.45637 0.00023059 505.2635534910378 72.738 0.63905 72.738 72.487 73.126 0 95 29 5 0 0 0 0.80624 1 40643 40643 2.8892 0 1 70813000 24555 13874 16672 16991 28964 28964 0.008860439694217348 ISQPRILLY 9 Unmodified _ISQPRILLY_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.7554931640625 2 551.834591 1101.65463 0.60373 0.00033316 -1.4174 -0.00078216 -0.81366 -0.00044901 551.8344405275813 77.464 0.32766 71.288 71.152 71.479 -6.1757 35 18 3 0 0 0 0.17729 1 50741 50741 21.537 6.2885 1 7674000 24556 359 16673 16992 28965 28965 0.10786881782428281 ISQVDKLL 8 Unmodified _ISQVDKLL_ 0 0 0 ENST00000546398.5_1_12:95611596-95687545:+|nuORF;ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT ENST00000546398.5_1_12:95611596-95687545:+|nuORF ENST00000546398.5_1_12:95611596-95687545:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.750732421875 2 458.279118 914.543683 0.66222 0.00030348 1.1267 0.00051633 1.7889 0.00081981 458.2795042553047 45.537 0.32525 40.582 40.464 40.789 -4.9549 31 21 2 0 0 0 8.7369 1 28092 28092 23.148 7.3012 1 8709100 24557 571 16674 16993 28966 28966 0.08299242074338053 ISRAGSPITVM 11 Unmodified _ISRAGSPITVM_ 0 0 0 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8780822753906 3 377.877869 1130.61178 1.0781 0.00040739 0.73862 0.00027911 1.8167 0.0006865 377.8783266532187 31.562 0.64298 27.867 27.664 28.307 -3.6958 45 34 2 0 0 0 0.17474 1 17837 17837 33.821 3.3899 1 83114000 + 24558 20780 16675 16994 28967 28967 0.05169743662668225 ISRCLFYEV 9 Unmodified _ISRCLFYEV_ 0 0 0 nc|ENSG00000131724|P78552-2|IL13RA1;ENSG00000131724|ENST00000371666|IL13RA1 nc|ENSG00000131724|P78552-2|IL13RA1 nc|ENSG00000131724|P78552-2|IL13RA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2887573242188 2 565.289159 1128.56377 -0.37232 -0.00021047 -2.8232 -0.0015959 -3.1955 -0.0018064 565.2888858371167 33.915 0.20485 33.915 33.804 34.009 0 16 9 3 0 0 0 0.07087 1 17846 17846 39.95 9.3132 1 3487100 24559 4344 16676 16995 28968 28968 0.004626697426147075 ISRHGFAKA 9 Unmodified _ISRHGFAKA_ 0 0 0 REV__ENSG00000167910|ENST00000301645|CYP7A1 REV__ENSG00000167910|ENST00000301645|CYP7A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7798156738281 2 493.780151 985.545748 1.0192 0.00050326 -0.67717 -0.00033437 0.34203 0.00016889 493.77972985370957 19.465 0.27965 16.808 16.675 16.955 -2.6564 58 27 3 0 0 0 0.10734 1 10374 10374 32.305 1.6689 1 15249000 + 24560 22263 16677 16996 28969 28969 0.05239715602795059 ISRNCSRILV 10 Unmodified _ISRNCSRILV_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5577697753906 3 387.55713 1159.64956 1.0253 0.00039736 -0.32095 -0.00012438 0.70435 0.00027297 387.5571416009548 22.395 0.50575 19.616 19.248 19.753 -2.7784 46 27 3 0 0 0 0.40136 1 11899 11899 14.218 14.218 1 7248800 + 24561 17400 16678 16997 28970 28970 0.0761225464814288 ISRNFIRF 8 Unmodified _ISRNFIRF_ 0 0 0 REV__nc|ENSG00000049130|P21583-3|KITLG REV__nc|ENSG00000049130|P21583-3|KITLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8018188476562 2 526.803626 1051.5927 0.20142 0.00010611 -3.3134 -0.0017455 -3.1119 -0.0016394 526.8018242842402 39.063 0.2124 39.074 38.962 39.174 0.011452 14 9 2 0 0 0 0.5284 1 20805 20805 32.117 7.4431 1 1598200 + 24562 17246 16679 16998 28971 28971 0.06896575153928097 ISRPLNRE 8 Unmodified _ISRPLNRE_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 985.7232666015625 1 984.558504 983.551228 0.56268 0.00055399 -3.6197 -0.0035638 -3.0571 -0.0030099 984.5555542435883 26.941 0.36212 23.905 23.57 23.932 -3.0365 27 18 2 0 0 0 0.80676 1 14755 14755 2.5775 0 1 10167000 24563 9772 16680 16999 28972 28972 0.05879394394605697 ISRPQSPLRF 10 Unmodified _ISRPQSPLRF_ 0 0 0 REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF REV__ENST00000478176.1_1_20:26084284-26094659:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8989868164062 3 400.899773 1199.67749 NaN NaN NaN NaN NaN NaN NaN 60.144 1 60.091 59.591 60.591 -0.053062 0 0 0 0.78689 1 32798 32798 12.873 4.7171 1 + 24564 27624 16681 17000 28973 28973 0.08563900899866894 ISRQDPVTY 9 Unmodified _ISRQDPVTY_ 0 0 0 ENST00000504849.5_1_4:39324953-39367861:-|nuORF;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENST00000504849.5_1_4:39324953-39367861:-|nuORF ENST00000504849.5_1_4:39324953-39367861:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7802124023438 2 539.780013 1077.54547 0.34084 0.00018398 0.39529 0.00021337 0.73613 0.00039735 539.7799866937027 57.354 0.25324 56.864 56.75 57.003 -0.48974 26 11 3 0 0 0 0.19127 1 31158 31158 24.021 2.4836 1 3244200 24565 619 16682 17001 28974 28974 0.009802510922781948 ISRQDPVTY 9 Unmodified _ISRQDPVTY_ 0 0 0 ENST00000504849.5_1_4:39324953-39367861:-|nuORF;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENST00000504849.5_1_4:39324953-39367861:-|nuORF ENST00000504849.5_1_4:39324953-39367861:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.780013 1077.54547 0.24955 0.0001347 2.3436 0.001265 2.5931 0.0013997 539.7820013594117 56.743 0.4482 56.743 56.474 56.922 0 -0.060401 0.0018964 NaN 24.021 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 16416000 24566 619 16682 17001 0.009802510922781948 ISRQDPVTY 9 Unmodified _ISRQDPVTY_ 0 0 0 ENST00000504849.5_1_4:39324953-39367861:-|nuORF;ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1 ENST00000504849.5_1_4:39324953-39367861:-|nuORF ENST00000504849.5_1_4:39324953-39367861:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.780013 1077.54547 0.34084 0.00018398 0.39529 0.00021337 0.73613 0.00039735 539.7799866937027 57.354 0.25324 56.864 56.75 57.003 -0.48974 0.060401 -0.00020686 NaN 24.021 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3244200 24567 619 16682 17001 0.009802510922781948 ISRTAENIL 9 Unmodified _ISRTAENIL_ 0 0 0 REV__nc|ENSG00000215126|Q5RIA9-3|ZNG1E REV__nc|ENSG00000215126|Q5RIA9-3|ZNG1E MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2858581542969 2 508.790381 1015.56621 0.66402 0.00033785 1.9094 0.00097149 2.5734 0.0013093 509.292460215058 64.994 1.1313 58.818 58.347 59.478 -6.1757 144 63 3 0 0 0 0.21643 1 42227 42227 21.537 3.3906 1 41451000 + 24568 29939 16683 17002 28975 28975 0.059048414719427456 ISRWRLREVR 10 Unmodified _ISRWRLREVR_ 0 0 0 ENST00000517775.1_1_5:171519868-171520577:-|nuORF ENST00000517775.1_1_5:171519868-171520577:-|nuORF ENST00000517775.1_1_5:171519868-171520577:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.8208923339844 3 457.609105 1369.80549 0.48671 0.00022272 0.81922 0.00037488 1.3059 0.00059761 457.9438432050669 100.88 0.13103 100.84 100.76 100.9 -0.04216 9 4 3 0 0 0 0.72497 1 56061 56061 0.12286 0.028024 1 1352600 24569 14682 16684 17003 28976 28976 0.1353746121376389 ISRWRNPN 8 Unmodified _ISRWRNPN_ 0 0 0 REV__ENST00000471229.6_1_X:100878212-100878881:+|nuORF REV__ENST00000471229.6_1_X:100878212-100878881:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1043.048583984375 1 1042.55409 1041.54681 -0.08445 -8.8044E-05 -0.73148 -0.0007626 -0.81593 -0.00085065 1042.55543600583 51.716 0.094669 51.283 51.21 51.305 -0.43367 6 4 2 0 0 0 8.7369 1 27891 27891 9.3474 1.4373 1 5588000 + 24570 27491 16685 17004 28977 28977 0.02769929971691454 ISRYDWHY 8 Unmodified _ISRYDWHY_ 0 0 0 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 ENSG00000225830|ENST00000355832|ERCC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2666015625 2 570.267073 1138.51959 NaN NaN NaN NaN NaN NaN NaN 81.975 1 81.975 81.475 82.475 0 0 0 0 0.97444 1 45489 45489 0.79363 0 1 24571 10585 16686 17005 28978 28978 -0.04412598359340336 ISRYQEMIQ 9 Oxidation (M) _ISRYQEM(Oxidation (M))IQ_ ISRYQEM(1)IQ ISRYQEM(56)IQ 0 0 1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.293212890625 2 592.29243 1182.57031 1.0016 0.00059322 -0.98322 -0.00058235 0.018345 1.0865E-05 592.2922139783878 37.138 0.50656 32.855 32.613 33.12 -4.2835 100 30 4 0 0 0 0.028475 1 21649 21649 56.177 8.4284 1 87562000 24572 6116 16687 17006 28979 28979 1090 -0.013674370966555216 ISRYQEMIQ 9 Oxidation (M) _ISRYQEM(Oxidation (M))IQ_ 0 0 1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 592.29243 1182.57031 -1.1072 -0.00065576 -0.44683 -0.00026465 -1.554 -0.00092041 592.2923805060029 32.649 0.43289 32.649 32.495 32.927 0 -0.019543 -3.3959E-05 NaN 56.177 82 22 6 NaN NaN NaN NaN 0 NaN NaN 0 186150000 24573 6116 16687 17006 1090 -0.013674370966555216 ISSNAQLPEDE 11 Unmodified _ISSNAQLPEDE_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7781372070312 2 601.780407 1201.54626 NaN NaN NaN NaN NaN NaN NaN 81.785 1 81.785 81.285 82.285 0 0 0 0 0.93933 1 45385 45385 2.9952 0.93549 1 24574 3033 16688 17007 28980 28980 -0.046449990493329096 ISSQNDQLL 9 Unmodified _ISSQNDQLL_ 0 0 0 ENSG00000056586|ENST00000357244|RC3H2 ENSG00000056586|ENST00000357244|RC3H2 ENSG00000056586|ENST00000357244|RC3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2677001953125 2 509.264196 1016.51384 0.50054 0.00025491 2.2564 0.0011491 2.7569 0.001404 509.2656076073984 68.173 0.63367 68.173 67.697 68.33 0 39 30 2 0 0 0 0.53666 1 37838 37838 5.2307 0.90143 1 1144200 24575 786 16689 17008 28981 28981 0.006242583383254896 ISSSSSTVLQ 10 Unmodified _ISSSSSTVLQ_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MSMS AL20221201_MKP_PDAC_01 4 504.763916015625 2 504.764029 1007.5135 NaN NaN NaN NaN NaN NaN NaN 23.955 1 21.127 20.627 21.627 -2.8273 0 0 0 0.66657 1 13002 13002 18.146 1.9972 1 24576 6282 16690 17009 28982 28982 0.010048386184735136 ISSYTGKIEFF 11 Unmodified _ISSYTGKIEFF_ 0 0 0 REV__ENST00000514372.5_3_4:42412314-42412431:-|nuORF REV__ENST00000514372.5_3_4:42412314-42412431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3308715820312 2 646.332079 1290.6496 0.72982 0.00047171 -2.6329 -0.0017017 -1.9031 -0.00123 646.3304197412596 50.467 0.23905 50.062 49.939 50.178 -0.40521 24 11 3 0 0 0 0.42108 1 27175 27175 20.415 7.5419 1 3589800 + 24577 28193 16691 17010 28983 28983 0.01590533129137839 ISTEVNPKL 9 Unmodified _ISTEVNPKL_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.78759765625 2 500.787307 999.560061 NaN NaN NaN NaN NaN NaN NaN 36.981 1 36.981 36.481 37.481 0 0 0 0 0.049786 1 19644 19644 57.722 13.864 1 24578 368 16692 17011 28984 28984 0.060263232404167866 ISTFSDILQ 9 Unmodified _ISTFSDILQ_ 0 0 0 REV__ENSG00000164961|ENST00000318410|WASHC5 REV__ENSG00000164961|ENST00000318410|WASHC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7511596679688 2 512.27149 1022.52843 0.42129 0.00021582 0.97167 0.00049776 1.393 0.00071357 512.7732708322064 47.293 0.082664 47.293 47.231 47.314 0 8 3 3 0 0 0 0.20727 1 25861 25861 7.9102 0 1 291060 + 24579 21968 16693 17012 28985 28985 0.018063304864881502 ISTIPLHAF 9 Unmodified _ISTIPLHAF_ 0 0 0 nc|ENSG00000126500|Q9NZU1-1|FLRT1;ENSG00000126500|ENST00000682287|FLRT1 nc|ENSG00000126500|Q9NZU1-1|FLRT1 nc|ENSG00000126500|Q9NZU1-1|FLRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7880249023438 2 499.78711 997.559667 0.43257 0.0002162 3.4114 0.001705 3.8439 0.0019211 499.7887726559442 72.506 0.22739 72.03 71.918 72.145 -0.47609 15 10 2 0 0 0 0.48152 1 39701 39701 8.5933 0.68312 1 724680 24580 3954 16694 17013 28986 28986 0.06078948311221666 ISTLSQVLG 9 Unmodified _ISTLSQVLG_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 917.5306396484375 1 917.530224 916.522947 0.047439 4.3527E-05 -1.6115 -0.0014786 -1.5641 -0.0014351 917.5300528319287 70.627 0.38605 70.15 70.025 70.411 -0.47736 42 29 2 0 0 0 0.05447 1 38660 38660 43.858 2.0187 1 6176400 + 24581 19283 16695 17014 28987 28987 0.06134651694662807 ISTSGYSWL 9 Unmodified _ISTSGYSWL_ 0 0 0 nc|ENSG00000177943|Q6UXC1-3|MAMDC4;ENSG00000177943|ENST00000317446|MAMDC4;nc|ENSG00000177943|Q6UXC1|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 nc|ENSG00000177943|Q6UXC1-3|MAMDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.251220703125 2 507.250557 1012.48656 1.0486 0.00053191 -1.0284 -0.00052166 0.020211 1.0252E-05 507.75237092259215 55.158 0.31887 49.237 49.031 49.35 -5.9211 26 19 2 0 0 0 0.070838 1 35128 35128 39.957 3.4912 1 9629100 24582 8717 16696 17015 28988 28988 -0.019182252020527812 ISTSPFDTSLY 11 Unmodified _ISTSPFDTSLY_ 0 0 0 REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2 REV__nc|ENSG00000182158|Q70SY1-3|CREB3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8680419921875 3 410.867805 1229.58158 -0.26635 -0.00010943 1.3785 0.00056637 1.1121 0.00045693 410.86837854878354 34.699 0.14793 34.508 34.393 34.541 -0.19131 10 6 2 0 0 0 0.68427 1 18139 18139 2.6312 0 1 2968200 + 24583 23246 16697 17016 28989 28989 -0.02402336521504367 ISTYFDYMTD 10 Unmodified _ISTYFDYMTD_ 0 0 0 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.1773376464844 3 419.177762 1254.51146 -0.66629 -0.00027929 -1.0215 -0.00042819 -1.6878 -0.00070749 419.17731295277133 33.962 0.35791 33.962 33.765 34.123 0 49 17 4 0 0 0 0.71123 1 17918 17918 0.69767 0.24315 1 14440000 + 24584 24654 16698 17017 28990 28990 -0.10561958181665432 ISVGLLSVAA 10 Unmodified _ISVGLLSVAA_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.287353515625 2 465.286943 928.559333 1.1235 0.00052277 -0.083684 -3.8937E-05 1.0399 0.00048383 465.28688065454236 96.151 0.37474 89.976 89.748 90.122 -6.1757 72 22 4 0 0 0 0.043729 1 63749 63749 61.357 0 1 232080000 24585 7267 16699 17018 28991 28991 0.09219528591358994 ISVKLGKG 8 Unmodified _ISVKLGKG_ 0 0 0 ENST00000467290.1_1_X:103375492-103375561:-|nuORF ENST00000467290.1_1_X:103375492-103375561:-|nuORF ENST00000467290.1_1_X:103375492-103375561:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2624206542969 2 401.263271 800.511988 0.36976 0.00014837 0.15539 6.2352E-05 0.52515 0.00021072 401.2631953894218 24.359 0.3171 21.531 21.392 21.709 -2.8273 28 17 2 0 0 0 0.3408 1 13220 13220 50.855 4.8341 1 5556700 24586 13773 16700 17019 28992 28992 0.10375294111054245 ISVKRLASL 9 Unmodified _ISVKRLASL_ 0 0 0 REV__ENST00000495352.5_1_7:102124102-102135092:-|nuORF REV__ENST00000495352.5_1_7:102124102-102135092:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.8203735351562 2 493.821484 985.628415 NaN NaN NaN NaN NaN NaN NaN 73.416 1 72.94 72.44 73.44 -0.47588 0 0 0 0.82396 1 40176 40176 4.756 0 1 + 24587 18460 16701 17020 28993 28993 0.13502612610921005 ISVNALADEGF 11 Unmodified _ISVNALADEGF_ 0 0 0 REV__ENSG00000129083|ENST00000439561|COPB1 REV__ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2897338867188 2 568.285128 1134.5557 0.56957 0.00032368 2.2339 0.0012695 2.8034 0.0015932 568.2886951122044 93.608 0.95779 93.15 92.575 93.533 -0.4574 150 43 5 0 0 0 0.70701 1 51033 51033 3.5965 1.2938 1 1582700 + 24588 19648 16702 17021 28994 28994 -0.00619185973164349 ISVPIKRN 8 Unmodified _ISVPIKRN_ 0 0 0 nc|ENSG00000197168|Q6P3R8|NEK5;ENSG00000197168|ENST00000684899|NEK5 nc|ENSG00000197168|Q6P3R8|NEK5 nc|ENSG00000197168|Q6P3R8|NEK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7932739257812 2 463.792727 925.5709 0.74022 0.00034331 -0.62074 -0.00028789 0.11949 5.5417E-05 463.7925282203838 50.758 0.21479 50.704 50.57 50.784 -0.053871 14 10 2 0 0 0 0.74163 1 27435 27435 13.508 0.97634 1 1120800 24589 9921 16703 17022 28995 28995 0.10513770405361811 ISVQCHFIL 9 Unmodified _ISVQCHFIL_ 0 0 0 ENST00000295087.12_1_2:152659146-152659368:-|nuORF ENST00000295087.12_1_2:152659146-152659368:-|nuORF ENST00000295087.12_1_2:152659146-152659368:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8607482910156 3 353.860039 1058.55829 2.1319 0.00075439 -0.37333 -0.00013211 1.7586 0.00062228 353.85994629632023 41.841 0.62361 37.233 36.894 37.517 -4.6079 80 39 3 0 0 0 0.25681 1 25201 25201 13.615 4.0709 1 12851000 24590 11486 16704 17023 28996 28996 0.03134990950820793 ISWQFLKES 9 Unmodified _ISWQFLKES_ 0 0 0 REV__HTR2A|p.R297W|1|0.16|ENSG00000102468|chr13:46835364-46835364|G/A|missense_variant REV__HTR2A|p.R297W|1|0.16|ENSG00000102468|chr13:46835364-46835364|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3009033203125 2 569.300581 1136.58661 0.32147 0.00018301 0.22465 0.00012789 0.54612 0.0003109 569.3002099469574 66.39 0.36604 65.907 65.744 66.11 -0.48324 44 18 3 0 0 0 0.2143 1 36330 36330 21.747 1.293 1 6086200 + 24591 29389 16705 17024 28997 28997 0.02378012131748619 ISWTFSSSSL 10 Unmodified _ISWTFSSSSL_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7725219726562 2 557.774396 1113.53424 1.2375 0.00069027 3.7224 0.0020763 4.9599 0.0027665 557.775528386796 50.255 0.9464 44.716 44.251 45.198 -5.5391 135 60 4 0 0 0 0.27276 1 31628 31628 29.082 2.8134 1 165620000 24592 9223 16706 17025 28998 28998 -0.017985710018365353 ISYAEQYPKF 10 Unmodified _ISYAEQYPKF_ 0 0 0 ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3125610351562 2 623.311146 1244.60774 0.42331 0.00026385 1.0839 0.00067563 1.5073 0.00093949 623.3118079250104 75.579 0.32272 75.627 75.474 75.797 0.047943 38 14 3 0 0 0 0.47869 1 41647 41647 20.454 20.454 1 7015000 24593 2014 16707 17026 28999 28999 -0.0047802255940041505 ISYDPMQELRM 11 Unmodified _ISYDPMQELRM_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.82421875 2 691.82578 1381.63701 -1.065 -0.00073679 -0.39384 -0.00027247 -1.4588 -0.0010093 691.825494618854 32.8 0.3494 32.8 32.639 32.988 0 46 17 3 0 0 0 0.65108 1 17235 17235 8.7454 1.1365 1 6875500 + 24594 20128 16708 17027 29000 29000 -0.038545695970697125 ISYFIYCMS 9 Unmodified _ISYFIYCMS_ 0 0 0 ENST00000025301.3_1_13:42875194-42875302:+|nuORF ENST00000025301.3_1_13:42875194-42875302:+|nuORF ENST00000025301.3_1_13:42875194-42875302:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.751953125 2 563.751021 1125.48749 NaN NaN NaN NaN NaN NaN NaN 76.484 1 76.005 75.505 76.505 -0.47945 0 0 0 0.76439 1 41867 41867 7.2892 2.5332 1 24595 10967 16709 17028 29001 29001 -0.07023470149010791 ISYISDGLSCM 11 Unmodified _ISYISDGLSCM_ 0 0 0 REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8457336425781 3 396.847359 1187.52025 -0.31129 -0.00012353 -1.7119 -0.00067937 -2.0232 -0.0008029 396.84637325708843 78.37 0.37915 77.884 77.705 78.084 -0.48596 38 17 3 0 0 0 0.48615 1 42955 42955 9.7643 0 1 3987700 + 24596 20089 16710 17029 29002 29002 -0.06601307816799817 ISYPDDRTF 9 Unmodified _ISYPDDRTF_ 0 0 0 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.8231201171875 2 557.264196 1112.51384 1.3545 0.00075484 -0.2504 -0.00013954 1.1041 0.0006153 557.2637861613127 86.544 0.37096 80.369 80.196 80.567 -6.1757 33 19 2 0 0 0 0.18118 1 57060 57060 18.135 1.1927 1 20103000 + 24597 19570 16711 17030 29003 29003 -0.03791741661666492 ISYRGCITQL 10 Unmodified _ISYRGCITQL_ 0 0 0 ENSG00000176294|ENST00000557677|OR4N2;ENSG00000279408|ENST00000623441|OR4N4C;ENSG00000183706|ENST00000328795|OR4N4 ENSG00000176294|ENST00000557677|OR4N2 ENSG00000176294|ENST00000557677|OR4N2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.3070068359375 2 577.305341 1152.59613 NaN NaN NaN NaN NaN NaN NaN 45.866 1 45.866 45.366 46.366 0 0 0 0 0.71157 1 25033 25033 16.149 6.0752 1 24598 8583 16712 17031 29004 29004 0.025934571456446065 ISYSPDRVF 9 Unmodified _ISYSPDRVF_ 0 0 0 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7796020507812 2 542.277106 1082.53966 0.083648 4.5361E-05 0.75477 0.00040929 0.83842 0.00045465 542.2775685208894 58.778 0.52947 58.287 58.049 58.579 -0.49079 56 25 3 0 0 0 0.25681 1 31978 31978 19.257 19.257 1 7652000 24599 16455 16713 17032 29005 29005 0.0016915258061089844 ISYSPDRVF 9 Unmodified _ISYSPDRVF_ 0 0 0 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.277106 1082.53966 0.34273 0.00018585 1.6137 0.00087508 1.9564 0.0010609 542.2776610210385 58.232 0.20922 58.232 58.131 58.34 0 -0.027851 0.00075761 NaN 19.257 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 795650 24600 16455 16713 17032 0.0016915258061089844 ISYTAKLSF 9 Unmodified _ISYTAKLSF_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|75|2|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|75|2|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|75|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.28564453125 2 515.2844 1028.55425 NaN NaN NaN NaN NaN NaN NaN 59.156 1 58.666 58.166 59.166 -0.49079 0 0 0 0.70001 1 32181 32181 9.3831 0.63772 1 24601 15967 16714 17033 29006 29006 0.04111224728740126 ITAFGYSYI 9 Unmodified _ITAFGYSYI_ 0 0 0 REV__ENSG00000090054|ENST00000262554|SPTLC1 REV__ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7635498046875 2 517.7633 1033.51205 0.59288 0.00030697 -0.57457 -0.00029749 0.01831 9.4804E-06 517.7630248678373 82.077 0.42903 75.902 75.657 76.086 -6.1757 40 23 2 0 0 0 0.32871 1 53877 53877 15.847 2.3393 1 23994000 + 24602 17850 16715 17034 29007 29007 -0.0033675067961667082 ITAPPSRVL 9 Unmodified _ITAPPSRVL_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.29296875 2 477.292559 952.570566 0.087577 4.18E-05 -0.054634 -2.6077E-05 0.032942 1.5723E-05 477.2925779018129 39.527 0.71719 39.23 38.951 39.668 -0.29716 71 34 3 0 0 0 0.023481 3 20880 20772;20880;20990 60.074 7.6454 1 5140200 24603 1685 16716 17035 29008;29009;29010 29009 0.09238350685518526 ITAPPSRVL 9 Unmodified _ITAPPSRVL_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2929992675781 2 477.292559 952.570566 0.24333 0.00011614 0.63938 0.00030517 0.88271 0.00042131 477.29283974030363 39.1 0.69128 39.111 38.9 39.592 0.011456 51 32 2 0 0 0 0.091924 2 20876 20775;20876 34.932 3.3906 1 2611800 24604 1685 16716 17035 29011;29012 29012 0.09238350685518526 ITAPPSRVL 9 Unmodified _ITAPPSRVL_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2924499511719 2 477.292559 952.570566 0.65105 0.00031074 -0.10125 -4.8324E-05 0.54981 0.00026242 477.29251558788906 44.509 0.83281 39.657 39.356 40.188 -4.852 115 63 2 0 0 0 0.012668 4 27326 27067;27203;27326;27460 72.968 11.701 1 33639000 24605 1685 16716 17035 29013;29014;29015;29016 29015 0.09238350685518526 ITAVLTKII 9 Unmodified _ITAVLTKII_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3291015625 2 486.328611 970.642668 0.94316 0.00045869 0.58311 0.00028358 1.5263 0.00074227 486.3288489312306 82.918 0.39314 82.98 82.788 83.181 0.062004 34 14 3 0 0 0 0.026094 1 45937 45937 57.471 1.2943 1 15313000 24606 2166 16717 17036 29017 29017 0.15617265039213635 ITAVPDVASI 10 Unmodified _ITAVPDVASI_ 0 0 0 REV__ENSG00000197818|ENST00000361573|SLC9A8 REV__ENSG00000197818|ENST00000361573|SLC9A8 MSMS AL20221201_MKP_PDAC_01 4 493.2816772460938 2 493.281857 984.549162 NaN NaN NaN NaN NaN NaN NaN 102.09 1 95.919 95.419 96.419 -6.1757 0 0 0 0.61917 1 68524 68524 20.454 0 1 + 24607 23959 16718 17037 29018 29018 0.05626920866131968 ITAVTVNQSL 10 Unmodified _ITAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2971801757812 2 523.298039 1044.58152 0.8491 0.00044433 -0.71849 -0.00037598 0.13062 6.8352E-05 523.2976773594165 49.764 0.25381 49.764 49.606 49.859 0 19 11 2 0 0 0 0.043729 1 27390 27390 61.357 29.052 1 2263500 + 24608 165 16719 17038 29019 29019 0.061017082691250835 ITAVTVNQSL 10 Unmodified _ITAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.298095703125 2 523.298039 1044.58152 0.74335 0.000389 -0.125 -6.5412E-05 0.61835 0.00032358 523.2980560378649 50.215 0.28159 49.823 49.65 49.931 -0.3923 32 13 3 0 0 0 0.020813 1 26996 26996 74.929 42.624 1 6077700 + 24609 165 16719 17038 29020 29020 0.061017082691250835 ITDALAML 8 Unmodified _ITDALAML_ 0 0 0 REV__ENSG00000172869|ENST00000539542|DMXL1 REV__ENSG00000172869|ENST00000539542|DMXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.4601440429688 1 847.459367 846.45209 0.4474 0.00037915 0.80662 0.00068358 1.254 0.0010627 847.4598279267232 93.593 0.39673 87.418 87.207 87.603 -6.1757 29 24 2 0 0 0 0.24071 2 62041 61869;62041 63.563 16.642 1 10353000 + 24610 22681 16720 17039 29021;29022 29022 0.022722353854987887 ITDDLHFYV 9 Unmodified _ITDDLHFYV_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7774047851562 2 561.776939 1121.53933 NaN NaN NaN NaN NaN NaN NaN 67.161 1 66.679 66.179 67.179 -0.48218 0 0 0 0.33856 1 36688 36688 23.148 8.5667 1 24611 9918 16721 17040 29023 29023 -0.016582671392370685 ITDGKYFSF 9 Unmodified _ITDGKYFSF_ 0 0 0 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.265380859375 2 539.266207 1076.51786 -0.19448 -0.00010488 1.5475 0.0008345 1.353 0.00072962 539.2670138617774 69.496 0.524 69.017 68.721 69.245 -0.47903 33 22 2 0 0 0 0.28047 1 37873 37873 18.135 0 1 3815900 24612 2937 16722 17041 29024 29024 -0.017336521679453654 ITDNTEVDTGI 11 Unmodified _ITDNTEVDTGI_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.19384765625 3 393.190947 1176.55101 1.1346 0.0004461 3.5149 0.001382 4.6495 0.0018281 393.19208915432324 39.215 0.34924 34.764 34.565 34.914 -4.4509 31 21 2 0 0 0 0.63851 1 23216 23216 4.7159 0 1 9442500 24613 3357 16723 17042 29025 29025 -0.030201149065533173 ITDQIGMFSF 10 Unmodified _ITDQIGMFSF_ 0 0 0 nc|ENSG00000120053|P17174-2|GOT1;ENSG00000120053|ENST00000370508|GOT1 nc|ENSG00000120053|P17174-2|GOT1 nc|ENSG00000120053|P17174-2|GOT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3073120117188 2 579.778625 1157.5427 -0.22018 -0.00012766 -1.2343 -0.00071562 -1.4545 -0.00084327 579.7783341290226 101.31 0.11196 101.27 101.22 101.33 -0.04216 5 3 2 0 0 0 0.23325 1 56315 56315 10.074 2.1638 1 1180700 24614 3491 16724 17043 29026 29026 -0.029773403568697177 ITEAPLGT 8 Unmodified _ITEAPLGT_ 0 0 0 ENST00000431210.2_1_11:74554845-74555076:-|nuORF;ENST00000531849.5_1_11:74554845-74617298:-|nuORF ENST00000431210.2_1_11:74554845-74555076:-|nuORF ENST00000431210.2_1_11:74554845-74555076:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2224731445312 2 401.221268 800.427984 0.83901 0.00033663 1.346 0.00054006 2.185 0.00087669 401.2218219760949 49.921 0.33868 49.528 49.353 49.692 -0.3923 30 16 2 0 0 0 0.79669 1 26937 26937 8.5933 0 1 5624800 24615 13256 16725 17044 29027 29027 0.019787182234722422 ITEAPLGT 8 Unmodified _ITEAPLGT_ 0 0 0 ENST00000431210.2_1_11:74554845-74555076:-|nuORF;ENST00000531849.5_1_11:74554845-74617298:-|nuORF ENST00000431210.2_1_11:74554845-74555076:-|nuORF ENST00000431210.2_1_11:74554845-74555076:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 401.221268 800.427984 0.61032 0.00024487 1.9216 0.000771 2.532 0.0010159 401.2219412778007 49.53 0.4735 49.481 49.29 49.763 -0.048828 -0.023814 0.00019708 NaN 8.5933 57 23 3 NaN NaN NaN NaN 0 NaN NaN 0 14112000 24616 13256 16725 17044 0.019787182234722422 ITECFRCLRNA 11 Unmodified _ITECFRCLRNA_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.5546875 3 442.55328 1324.63801 0.35505 0.00015713 2.8421 0.0012578 3.1971 0.0014149 442.5543824169766 17.175 0.10905 17.18 17.132 17.241 0.0050564 11 7 2 0 0 0 0.7326 1 8659 8659 1.2148 0.20126 1 769840 24617 15906 16726 17045 29028 29028 -0.011323104374923787 ITEETRSNL 9 Unmodified _ITEETRSNL_ 0 0 0 REV__ENSG00000150630|ENST00000618562|VEGFC REV__ENSG00000150630|ENST00000618562|VEGFC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7755737304688 2 531.774928 1061.5353 NaN NaN NaN NaN NaN NaN NaN 83.976 1 83.477 82.977 83.977 -0.49961 0 0 0 0.29524 1 45960 45960 25.399 4.5281 1 + 24618 21030 16727 17046 29029 29029 0.006996433670565239 ITEMIWDDI 9 Unmodified _ITEMIWDDI_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7302856445312 2 568.270632 1134.52671 0.32638 0.00018547 -0.22687 -0.00012893 0.099504 5.6545E-05 568.2704756306164 78.156 0.32962 78.156 77.984 78.313 0 33 13 3 0 0 0 0.20727 1 43506 43506 7.9102 1.187 1 1329600 + 24619 23632 16728 17047 29030 29030 -0.03517046593788109 ITESKSLIP 9 Unmodified _ITESKSLIP_ 0 0 0 ENSG00000126814|ENST00000261249|TRMT5 ENSG00000126814|ENST00000261249|TRMT5 ENSG00000126814|ENST00000261249|TRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.29052734375 2 494.289682 986.564812 1.005 0.00049678 -1.0922 -0.00053988 -0.087208 -4.3106E-05 494.2889442903059 49.559 0.45274 49.51 49.25 49.703 -0.048824 34 22 2 0 0 0 0.12424 1 26800 26800 30.637 0.41173 1 5049000 24620 3973 16729 17048 29031 29031 0.07099207383191697 ITETFNCSF 9 Unmodified _ITETFNCSF_ 0 0 0 ENSG00000197584|ENST00000452583|KCNMB2;chr3:178558984-178807343|108|11.11|0.68|4.03|+|ENST00000432997|KCNMB2,KCNMB2 ENSG00000197584|ENST00000452583|KCNMB2 ENSG00000197584|ENST00000452583|KCNMB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.1756591796875 2 531.23405 1060.45355 0.41121 0.00021845 3.3127 0.0017598 3.7239 0.0019783 531.236661039041 71.2 0.2486 70.723 70.636 70.884 -0.47736 12 10 2 0 0 0 0.20528 1 39003 39003 8.5933 0.68312 1 875810 24621 111 16730 17049 29032 29032 -0.07426175316413719 ITEVIFIYY 9 Unmodified _ITEVIFIYY_ 0 0 0 REV__ENSG00000168418|ENST00000308251|KCNG4 REV__ENSG00000168418|ENST00000308251|KCNG4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8153076171875 2 580.815533 1159.61651 NaN NaN NaN NaN NaN NaN NaN 79.871 1 79.871 79.371 80.371 0 0 0 0 0.85737 1 44356 44356 0.6015 0 1 + 24622 22308 16731 17050 29033 29033 0.04308951077064194 ITFAFLLQV 9 Unmodified _ITFAFLLQV_ 0 0 0 nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF nc|ENSG00000109046|Q9Y6I7-4|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.31201171875 2 526.312961 1050.61137 NaN NaN NaN NaN NaN NaN NaN 70.748 1 70.27 69.77 70.77 -0.47735 0 0 0 0.6032 1 38709 38709 12.532 3.1841 1 24623 13790 16732 17051 29034 29034 0.08808692005140983 ITFDMNEQF 9 Unmodified _ITFDMNEQF_ 0 0 0 REV__ENST00000468439.2_1_3:132107728-132107881:+|nuORF REV__ENST00000468439.2_1_3:132107728-132107881:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3284912109375 2 572.752607 1143.49066 0.13852 7.9338E-05 -1.7578 -0.0010068 -1.6193 -0.00092747 572.7516276306889 77.553 0.21188 77.603 77.486 77.698 0.05011 13 8 2 0 0 0 0.20727 1 42784 42784 4.3292 0 1 1112400 + 24624 17905 16733 17052 29035 29035 -0.07534503770648371 ITFDSNGTY 9 Unmodified _ITFDSNGTY_ 0 0 0 ENSG00000187244|ENST00000270233|BCAM;ENST00000589558.1_1_19:45321789-45322216:+|nuORF ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2317504882812 2 509.229822 1016.44509 0.36473 0.00018573 3.7707 0.0019201 4.1354 0.0021059 509.23107723496315 58.886 0.32546 58.886 58.699 59.024 0 32 14 3 0 0 0 0.16226 1 32757 32757 26.884 0.54238 1 5273700 24625 9548 16734 17053 29036 29036 -0.062474059613805366 ITFKDLAVRF 10 Unmodified _ITFKDLAVRF_ 0 0 0 ENSG00000133619|ENST00000496259|KRBA1 ENSG00000133619|ENST00000496259|KRBA1 ENSG00000133619|ENST00000496259|KRBA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.35009765625 2 605.353148 1208.69174 NaN NaN NaN NaN NaN NaN NaN 102.09 1 102.05 101.55 102.55 -0.045853 0 0 0 0.99248 1 56712 56712 1.4819 0 1 24626 4523 16735 17054 29037 29037 0.09574553328161528 ITFLQNKE 8 Unmodified _ITFLQNKE_ 0 0 0 REV__ENSG00000138604|ENST00000261858|GLCE REV__ENSG00000138604|ENST00000261858|GLCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5398559570312 1 992.541123 991.533846 0.24866 0.00024681 -2.2448 -0.0022281 -1.9961 -0.0019813 992.5390715873758 99.738 0.21687 93.562 93.46 93.677 -6.1757 22 14 2 0 0 0 0.48669 1 66515 66515 36.044 0 1 20617000 + 24627 20341 16736 17055 29038 29038 0.037740540689469526 ITFSPDYPF 9 Unmodified _ITFSPDYPF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.297607421875 2 543.760758 1085.50696 0.74172 0.00040332 -2.515 -0.0013676 -1.7733 -0.00096426 543.759570638993 80.845 0.32581 80.903 80.762 81.088 0.057587 20 12 2 0 0 0 0.18521 1 44748 44748 11.64 0 1 1773300 24628 9035 16737 17056 29039 29039 -0.03237054542250917 ITGEPDVLL 9 Unmodified _ITGEPDVLL_ 0 0 0 REV__nc|ENSG00000148082|Q92529-2|SHC3 REV__nc|ENSG00000148082|Q92529-2|SHC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7692260742188 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 77.67 1 77.67 77.17 78.17 0 0 0 0 0.82739 1 43180 43180 4.3292 0 1 + 24629 20924 16738 17057 29040 29040 0.04307231974826209 ITGFDLMDLF 10 Oxidation (M) _ITGFDLM(Oxidation (M))DLF_ ITGFDLM(1)DLF ITGFDLM(52)DLF 0 0 1 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2852783203125 2 594.286282 1186.55801 NaN NaN NaN NaN NaN NaN NaN 53.391 1 53.391 52.891 53.891 0 0 0 0 0.087592 1 29585 29585 52.268 12.311 1 24630 134 16739 17058 29041 29041 9 -0.02780473559710117 ITGFVCVFVF 10 Unmodified _ITGFVCVFVF_ 0 0 0 REV__ENSG00000160716|ENST00000368476|CHRNB2 REV__ENSG00000160716|ENST00000368476|CHRNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2977294921875 2 566.298996 1130.58344 0.6324 0.00035813 -2.6559 -0.001504 -2.0235 -0.0011459 566.2984104591552 88.118 0.26845 87.613 87.482 87.75 -0.50423 22 10 3 0 0 0 0.52888 1 48181 48181 14.838 2.3067 1 478050 + 24631 21561 16740 17059 29042 29042 0.023370457533928857 ITGHKPHPIN 10 Unmodified _ITGHKPHPIN_ 0 0 0 REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8034057617188 2 557.311815 1112.60908 0.63466 0.0003537 2.0337 0.0011334 2.6684 0.0014871 557.3131843366958 64.866 0.40961 64.381 64.253 64.662 -0.48512 38 18 3 0 0 0 0.23325 1 35486 35486 10.074 2.7847 1 7286500 + 24632 27732 16741 17060 29043 29043 0.057276563200503006 ITGILKDYL 9 Unmodified _ITGILKDYL_ 0 0 0 nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3106079101562 2 518.307875 1034.6012 0.0011059 5.7319E-07 3.8983 0.0020205 3.8994 0.0020211 518.3100998546622 65.684 0.22792 65.2 65.061 65.289 -0.48428 15 9 2 0 0 0 0.15672 1 35884 35884 26.884 7.6267 1 849430 24633 2280 16742 17061 29044 29044 0.08528084279896575 ITGNFIIWC 9 Unmodified _ITGNFIIWC_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.77490234375 2 533.773145 1065.53174 0.30027 0.00016028 2.359 0.0012592 2.6592 0.0014194 533.774283265239 78.852 0.23164 78.852 78.698 78.929 0 15 10 2 0 0 0 0.55775 1 43820 43820 3.9444 0.3479 1 502710 + 24634 23718 16743 17062 29045 29045 0.0015930205950098753 ITGSKEIEDL 10 Unmodified _ITGSKEIEDL_ 0 0 0 REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.1591186523438 2 552.792786 1103.57102 0.91848 0.00050773 0.67747 0.0003745 1.5959 0.00088223 552.7931499009723 36.472 0.39932 36.472 36.311 36.71 0 44 19 3 0 0 0 0.52888 1 19325 19325 14.838 0.93222 1 14827000 + 24635 17931 16744 17063 29046 29046 0.02337680824052768 ITGTGYLSL 9 Unmodified _ITGTGYLSL_ 0 0 0 REV__nc|ENSG00000112305|Q8IYB5-3|SMAP1 REV__nc|ENSG00000112305|Q8IYB5-3|SMAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 924.5037841796875 1 924.503674 923.496398 0.51043 0.00047189 -0.71206 -0.00065831 -0.20164 -0.00018641 924.5029541447999 67.927 0.36012 67.444 67.255 67.615 -0.48219 39 16 3 0 0 0 0.06187 1 37164 37164 42.095 2.1372 1 10882000 + 24636 18808 16745 17064 29047 29047 0.03158962803343002 ITGWEDLKL 9 Unmodified _ITGWEDLKL_ 0 0 0 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7954711914062 2 537.795132 1073.57571 0.2585 0.00013902 -0.1686 -9.067E-05 0.089907 4.8352E-05 537.7949639514852 83.074 0.8775 83.074 82.506 83.383 0 117 44 4 0 0 0 0.32871 1 46011 46011 15.847 1.9411 1 12289000 + 24637 29598 16746 17065 29048 29048 0.04186609757448423 ITHCSLEFL 9 Unmodified _ITHCSLEFL_ 0 0 0 ENST00000468586.5_1_1:62149195-62160394:-|nuORF;ENST00000488410.5_1_1:62149195-62160440:-|nuORF ENST00000468586.5_1_1:62149195-62160394:-|nuORF ENST00000468586.5_1_1:62149195-62160394:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.7894897460938 2 531.76806 1061.52157 1.2783 0.00067978 -2.3543 -0.001252 -1.076 -0.00057217 531.7651167967648 90.57 0.53003 84.395 84.257 84.787 -6.1757 50 31 2 0 0 0 0.1474 1 60102 60102 10.824 0 1 14681000 24638 13813 16747 17066 29049 29049 -0.006733056657367342 ITHWGSLF 8 Unmodified _ITHWGSLF_ 0 0 0 REV__nc|ENSG00000160339|Q15485-2|FCN2 REV__nc|ENSG00000160339|Q15485-2|FCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7509155273438 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 53.287 1 53.224 52.724 53.724 -0.063423 0 0 0 0.88073 1 28895 28895 19.439 1.304 1 + 24639 17745 16748 17067 29050 29050 0.005138195886274843 ITIGLFFSN 9 Unmodified _ITIGLFFSN_ 0 0 0 ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42 ENST00000567019.1_1_15:43489502-43501706:-|nuORF ENST00000567019.1_1_15:43489502-43501706:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1011.346069335938 1 1011.55096 1010.54368 0.81925 0.00082872 0.31584 0.00031949 1.1351 0.0011482 1011.5511990351555 80.213 0.43059 79.724 79.479 79.91 -0.48932 46 16 4 0 0 0 0.21893 1 43807 43807 0.52476 0 1 7052800 24640 7554 16749 17068 29051 29051 0.03883242074334703 ITIGLFFSN 9 Unmodified _ITIGLFFSN_ 0 0 0 ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42 ENST00000567019.1_1_15:43489502-43501706:-|nuORF ENST00000567019.1_1_15:43489502-43501706:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1011.55096 1010.54368 0.54138 0.00054764 1.6623 0.0016815 2.2037 0.0022291 1011.5526554584445 79.639 0.27171 79.694 79.55 79.821 0.054977 -0.014847 0.0011925 NaN 0.52476 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3749800 24641 7554 16749 17068 0.03883242074334703 ITISGPFCLL 10 Unmodified _ITISGPFCLL_ 0 0 0 ENST00000513200.7_2_5:93800676-93805709:-|nuORF ENST00000513200.7_2_5:93800676-93805709:-|nuORF ENST00000513200.7_2_5:93800676-93805709:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2955322265625 2 532.296453 1062.57835 1.3085 0.00069652 -1.8025 -0.00095948 -0.49401 -0.00026296 532.2956275246826 98.369 0.13341 92.194 92.134 92.267 -6.1757 15 8 2 0 0 0 0.19662 1 65267 65267 34.102 7.2188 1 8292000 24642 14636 16750 17069 29052 29052 0.049567418908054606 ITKAVDGDM 9 Unmodified _ITKAVDGDM_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 475.2714538574219 2 475.236593 948.458632 0.81445 0.00038706 -1.5613 -0.00074198 -0.74683 -0.00035492 475.2357541777715 42.964 0.32398 38.279 38.107 38.431 -4.6846 35 20 2 0 0 0 0.19496 1 26007 26007 13.906 1.3745 1 8777300 + 24643 23320 16751 17070 29053 29053 -0.017658714537901687 ITKINPKCA 9 Unmodified _ITKINPKCA_ 0 0 0 ENSG00000166669|ENST00000562102|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2904357910156 2 494.28642 986.558287 0.98999 0.00048934 3.3022 0.0016322 4.2922 0.0021216 494.2881646815458 49.861 0.47146 49.469 49.178 49.65 -0.3923 45 23 2 0 0 0 0.070838 1 26850 26850 39.957 3.8303 1 6483400 24644 7517 16752 17071 29054 29054 0.0644699095081478 ITKLFPVC 8 Unmodified _ITKLFPVC_ 0 0 0 REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF REV__ENST00000531894.5_1_16:70011782-70023933:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.7679443359375 2 460.767332 919.52011 NaN NaN NaN NaN NaN NaN NaN 98.147 1 91.972 91.472 92.472 -6.1757 0 0 0 0.57076 1 65069 65069 36.044 1.8569 1 + 24645 28452 16753 17072 29055 29055 0.05713105036147681 ITKNWHTK 8 Unmodified _ITKNWHTK_ 0 0 0 REV__nc|ENSG00000078304|Q13362-4|PPP2R5C REV__nc|ENSG00000078304|Q13362-4|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.79296875 2 514.287808 1026.56106 0.36321 0.00018679 1.4928 0.00076772 1.856 0.00095451 514.2866780567236 72.623 0.43293 72.623 72.387 72.819 0 42 19 4 0 0 0 0.76266 1 40395 40395 11.64 0 1 2442000 + 24646 17626 16754 17073 29056 29056 0.048845823999727145 ITKWLLGAF 9 Unmodified _ITKWLLGAF_ 0 0 0 REV__ENST00000415344.1_1_9:132892058-132895470:+|nuORF REV__ENST00000415344.1_1_9:132892058-132895470:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3150634765625 2 524.813128 1047.6117 1.0635 0.00055812 -1.6156 -0.00084788 -0.55212 -0.00028976 525.3144270422628 87.461 0.70724 81.285 80.788 81.495 -6.1757 58 38 3 0 0 0 0.23158 1 57418 57418 20.454 1.0146 1 12803000 + 24647 26755 16755 17074 29057 29057 0.08980111724986273 ITLEAYNKF 9 Unmodified _ITLEAYNKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.293212890625 2 549.795132 1097.57571 1.0865 0.00059736 -4.1842 -0.0023005 -3.0977 -0.0017031 550.2930289604335 55.133 0.39359 49.212 48.973 49.366 -5.9211 45 24 3 0 0 0 0.20428 1 35007 35007 22.736 0.98964 1 30424000 + 24648 17546 16756 17075 29058 29058 0.03082609757461796 ITLEAYNKF 9 Unmodified _ITLEAYNKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.795132 1097.57571 0.64141 0.00035265 -4.1678 -0.0022914 -3.5264 -0.0019388 550.2934299575717 49.248 0.33678 49.248 49.128 49.465 0 0.025773 -0.0011132 NaN 22.736 34 15 4 NaN NaN NaN NaN 0 NaN NaN 0 4806000 + 24649 17546 16756 17075 0.03082609757461796 ITLEAYNKF 9 Unmodified _ITLEAYNKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.795132 1097.57571 0.78444 0.00043128 -2.4139 -0.0013271 -1.6294 -0.00089586 550.294676336444 49.6 0.2546 49.208 49.098 49.353 -0.3923 -0.014683 0.00081536 NaN 22.736 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4371400 + 24650 17546 16756 17075 0.03082609757461796 ITLEAYNKF 9 Unmodified _ITLEAYNKF_ 0 0 0 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 REV__nc|ENSG00000074054|Q7Z460-2|CLASP1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 549.795132 1097.57571 1.0865 0.00059736 -4.1842 -0.0023005 -3.0977 -0.0017031 550.2930289604335 55.133 0.39359 49.212 48.973 49.366 -5.9211 -0.01109 -0.0011313 NaN 22.736 45 24 3 NaN NaN NaN NaN 0 NaN NaN 0 30424000 + 24651 17546 16756 17075 0.03082609757461796 ITLEEALL 8 Unmodified _ITLEEALL_ 0 0 0 ENSG00000280165|ENST00000409204|PCDH20 ENSG00000280165|ENST00000409204|PCDH20 ENSG00000280165|ENST00000409204|PCDH20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.74609375 2 451.265676 900.516799 1.2232 0.000552 -0.3272 -0.00014766 0.89601 0.00040434 451.26572393327217 49.551 0.35287 49.503 49.331 49.683 -0.048824 52 17 4 0 0 0 8.7369 1 26722 26722 13.508 13.508 1 32386000 24652 10946 16757 17076 29059 29059 0.06256133463148217 ITLEEHVSYC 10 Unmodified _ITLEEHVSYC_ 0 0 0 ENST00000394818.7_1_11:61919848-61920211:+|nuORF ENST00000394818.7_1_11:61919848-61920211:+|nuORF ENST00000394818.7_1_11:61919848-61920211:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2767333984375 2 597.278989 1192.54342 NaN NaN NaN NaN NaN NaN NaN 80.057 1 80.057 79.557 80.557 0 0 0 0 0.99248 1 44457 44457 1.4819 0.28856 1 24653 12748 16758 17077 29060 29060 -0.045145457078206164 ITLFYTVIMI 10 Unmodified _ITLFYTVIMI_ 0 0 0 REV__ENSG00000135914|ENST00000258400|HTR2B REV__ENSG00000135914|ENST00000258400|HTR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2348327636719 3 405.234883 1212.68282 1.287 0.00052155 -0.52548 -0.00021294 0.76155 0.00030861 405.2346756880999 40.821 0.39688 36.292 36.097 36.494 -4.5294 36 24 2 0 0 0 0.52888 1 24403 24403 8.9762 0 1 11633000 + 24654 20111 16759 17078 29061 29061 0.08498443647476961 ITLPHGHQL 9 Unmodified _ITLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2881164550781 2 508.287808 1014.56106 0.62911 0.00031977 -0.28108 -0.00014287 0.34803 0.0001769 508.2877888350719 54.612 0.66565 48.747 48.454 49.119 -5.8653 146 41 4 0 0 0 0.1773 1 34627 34627 25.399 1.3787 1 696850000 24655 4988 16760 17079 29062 29062 0.05436582400000134 ITLPHGHQL 9 Unmodified _ITLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.28857421875 2 508.287808 1014.56106 0.75195 0.00038221 -0.23152 -0.00011768 0.52043 0.00026453 508.28774324680984 69.197 1.5869 63.021 62.275 63.862 -6.1757 166 88 2 0 0 0 0.05447 3 44678 44678;45065;45450 43.858 3.9086 1 57409000 24656 4988 16760 17079 29063;29064;29065 29063 0.05436582400000134 ITLQTLFH 8 Unmodified _ITLQTLFH_ 0 0 0 ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7789306640625 2 486.779285 971.544017 0.86923 0.00042312 -0.94192 -0.00045851 -0.07269 -3.5384E-05 486.7785400516605 75.112 0.37029 74.634 74.474 74.844 -0.47713 41 16 3 0 0 0 0.6895 1 41169 41169 18.135 1.1927 1 13522000 24657 11541 16761 17080 29066 29066 0.05710661794205407 ITLQTLFH 8 Unmodified _ITLQTLFH_ 0 0 0 ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7800598144531 2 486.779285 971.544017 0.47579 0.0002316 1.0744 0.000523 1.5502 0.0007546 486.7794700331471 74.518 0.4027 74.564 74.411 74.813 0.045967 45 17 4 0 0 0 0.55032 1 41049 41049 30.225 5.5509 1 11303000 24658 11541 16761 17080 29067 29067 0.05710661794205407 ITLQTLFH 8 Unmodified _ITLQTLFH_ 0 0 0 ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF ENST00000299237.2_1_16:58031894-58032311:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7801208496094 2 486.779285 971.544017 1.3505 0.00065737 -0.010387 -5.056E-06 1.3401 0.00065232 486.7790878864045 96.565 0.45493 90.389 90.15 90.605 -6.1757 75 26 4 0 0 0 0.64853 1 63877 63877 21.747 2.4897 1 147420000 24659 11541 16761 17080 29068 29068 0.05710661794205407 ITLRFHDK 8 Unmodified _ITLRFHDK_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2955932617188 2 515.295633 1028.57671 0.54204 0.00027931 0.080234 4.1344E-05 0.62227 0.00032065 515.2956591854395 47.69 0.25146 47.338 47.223 47.474 -0.3526 19 11 2 0 0 0 0.52622 1 25564 25564 32.305 0.18852 1 6314700 + 24660 23849 16762 17081 29069 29069 0.06356868917032443 ITLRFHDK 8 Unmodified _ITLRFHDK_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.296630859375 2 515.295633 1028.57671 0.86773 0.00044714 0.3669 0.00018906 1.2346 0.0006362 515.2957733186337 47.437 0.26013 47.398 47.258 47.518 -0.038643 19 11 2 0 0 0 0.64853 1 25578 25578 21.747 1.293 1 2830600 + 24661 23849 16762 17081 29070 29070 0.06356868917032443 ITLRFHDK 8 Unmodified _ITLRFHDK_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 515.295633 1028.57671 0.54204 0.00027931 0.080234 4.1344E-05 0.62227 0.00032065 515.2956591854395 47.69 0.25146 47.338 47.223 47.474 -0.3526 -0.030197 -0.00017937 NaN 32.305 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6314700 + 24662 23849 16762 17081 0.06356868917032443 ITLRFHDK 8 Unmodified _ITLRFHDK_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 515.295633 1028.57671 0.86773 0.00044714 0.3669 0.00018906 1.2346 0.0006362 515.2957733186337 47.437 0.26013 47.398 47.258 47.518 -0.038643 0.030197 0.00011606 NaN 32.305 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2830600 + 24663 23849 16762 17081 0.06356868917032443 ITLRGTAHF 9 Unmodified _ITLRGTAHF_ 0 0 0 CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2886962890625 2 508.287808 1014.56106 0.51579 0.00026217 -0.21339 -0.00010846 0.3024 0.00015371 508.28765358597065 49.912 0.51367 49.52 49.277 49.791 -0.3923 94 25 5 0 0 0 0.07916 2 26766 26766;26873 37.974 1.4843 1 214250000 24664 129 16763 17082 29071;29072 29071 0.05436582400000134 ITLRGTAHF 9 Unmodified _ITLRGTAHF_ 0 0 0 CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.287109375 2 508.287808 1014.56106 0.62911 0.00031977 -0.28108 -0.00014287 0.34803 0.0001769 508.2877888350719 54.612 0.66565 48.747 48.454 49.119 -5.8653 146 41 4 0 0 0 0.047196 2 34484 34484;34764 46.021 0 1 696850000 24665 129 16763 17082 29073;29074 29073 0.05436582400000134 ITLRGTAHF 9 Unmodified _ITLRGTAHF_ 0 0 0 CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2884521484375 2 508.287808 1014.56106 0.75195 0.00038221 -0.23152 -0.00011768 0.52043 0.00026453 508.28774324680984 69.197 1.5869 63.021 62.275 63.862 -6.1757 166 88 2 0 0 0 0.031062 4 45203 44805;44945;45203;45330 54.774 12.934 1 57409000 24666 129 16763 17082 29075;29076;29077;29078 29077 0.05436582400000134 ITLSVSGSN 9 Unmodified _ITLSVSGSN_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS AL20221201_MKP_PDAC_01 4 439.2359008789062 2 439.234907 876.455261 NaN NaN NaN NaN NaN NaN NaN 100.61 1 94.436 93.936 94.936 -6.1757 0 0 0 0.27852 1 67323 67323 26.268 0.86883 1 24667 7161 16764 17083 29079 29079 0.01209201763879264 ITLTIEQP 8 Unmodified _ITLTIEQP_ 0 0 0 REV__nc|ENSG00000130856|Q9UL36-2|ZNF236 REV__nc|ENSG00000130856|Q9UL36-2|ZNF236 MSMS AL20221201_MKP_PDAC_01 4 457.7633666992188 2 457.7633 913.512048 NaN NaN NaN NaN NaN NaN NaN 55.246 1 49.325 48.825 49.825 -5.9211 0 0 0 0.25425 1 35143 35143 74.929 7.5851 1 + 24668 19750 16765 17084 29080 29080 0.05183249320384675 ITLYNNRWSCD 11 Unmodified _ITLYNNRWSCD_ 0 0 0 ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG ENSG00000126861|ENST00000247271|OMG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.8193969726562 2 692.819344 1383.62413 0.67879 0.00047028 -1.7821 -0.0012347 -1.1033 -0.0007644 692.8178811213811 81.479 0.20612 80.987 80.884 81.091 -0.49247 12 8 2 0 0 0 0.71341 1 44639 44639 2.9952 1.3426 1 367510 24669 3978 16766 17085 29081 29081 -0.052332646649347225 ITMDRKKTI 9 Unmodified _ITMDRKKTI_ 0 0 0 ENST00000477542.5_1_3:48415047-48423401:+|nuORF;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12 ENST00000477542.5_1_3:48415047-48423401:+|nuORF ENST00000477542.5_1_3:48415047-48423401:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.5662536621094 3 369.218115 1104.63251 1.3495 0.00049827 -0.6401 -0.00023634 0.70943 0.00026194 369.2180999350112 85.719 0.38426 79.544 79.445 79.829 -6.1757 31 21 2 0 0 0 0.20728 1 56515 56515 2.7352 0.45242 1 11485000 24670 7121 16767 17086 29082 29082 0.08438334042352835 ITMESYVV 8 Unmodified _ITMESYVV_ 0 0 0 ENST00000540645.5_1_9:116823569-116838999:-|nuORF;ENSG00000106927|ENST00000265132|AMBP;CON__P00978 ENST00000540645.5_1_9:116823569-116838999:-|nuORF ENST00000540645.5_1_9:116823569-116838999:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2343139648438 2 471.236061 940.45757 NaN NaN NaN NaN NaN NaN NaN 15.748 1 15.748 15.248 16.248 0 0 0 0 0.97444 1 7615 7615 2.5775 0 1 + 24671 154 16768 17087 29083 29083 -0.015040858226825549 ITMKDEDIF 9 Unmodified _ITMKDEDIF_ 0 0 0 nc|ENSG00000181355|Q8IZS5-2|OFCC1 nc|ENSG00000181355|Q8IZS5-2|OFCC1 nc|ENSG00000181355|Q8IZS5-2|OFCC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.801025390625 2 556.270632 1110.52671 1.6816 0.00093543 -0.19328 -0.00010752 1.4883 0.00082791 556.2704463993032 41.794 0.45945 37.186 36.952 37.412 -4.6079 68 28 3 0 0 0 0.18882 1 25071 25071 15.847 3.3156 1 21575000 24672 16430 16769 17088 29084 29084 -0.024130465938014822 ITNDFYPEED 10 Unmodified _ITNDFYPEED_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.5081481933594 3 414.843548 1241.50881 NaN NaN NaN NaN NaN NaN NaN 14.882 1 14.882 14.382 15.382 0 0 0 0 1.0024 1 7117 7117 0.13989 0 1 24673 2409 16770 17089 29085 29085 -0.10228090314922156 ITNEFFEF 8 Unmodified _ITNEFFEF_ 0 0 0 REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.74560546875 2 523.745108 1045.47566 0.88803 0.0004651 0.096012 5.0286E-05 0.98404 0.00051539 523.7451108524273 60.415 0.46417 60.415 60.116 60.581 0 49 20 3 0 0 0 0.75262 1 33640 33640 12.532 1.4171 1 14850000 + 24674 23465 16771 17090 29086 29086 -0.045256275763449594 ITNFERLVK 9 Unmodified _ITNFERLVK_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8894653320312 3 373.888874 1118.64479 1.0869 0.00040637 -0.34385 -0.00012856 0.74302 0.00027781 373.8888290789775 26.694 0.3224 23.743 23.579 23.901 -2.9511 43 16 3 0 0 0 0.08691 1 14787 14787 33.445 6.3161 1 18379000 24675 1647 16772 17091 29087 29087 0.09021693777026485 ITNITPDPA 9 Unmodified _ITNITPDPA_ 0 0 0 REV__ENSG00000155754|ENST00000439140|C2CD6 REV__ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.500732421875 1 941.493838 940.486562 0.76333 0.00071867 -0.92206 -0.00086811 -0.15873 -0.00014944 941.4927365918513 58.407 0.54773 52.333 52.05 52.598 -6.0745 61 29 3 0 0 0 0.07916 1 37316 37316 37.974 1.9298 1 38714000 + 24676 21285 16773 17092 29088 29088 0.013937747979412052 ITNKEQFII 9 Unmodified _ITNKEQFII_ 0 0 0 REV__ENST00000482172.5_1_13:21237473-21265311:+|nuORF REV__ENST00000482172.5_1_13:21237473-21265311:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.78857421875 2 553.316232 1104.61791 1.074 0.00059426 0.31316 0.00017328 1.3872 0.00076754 553.3161412687132 71.354 0.39441 71.393 71.184 71.579 0.039024 54 16 4 0 0 0 0.11314 1 39239 39239 31.268 9.5217 1 8328100 + 24677 27716 16774 17093 29089 29089 0.06978585165848017 ITNNQLQPVY 10 Unmodified _ITNNQLQPVY_ 0 0 0 REV__ENSG00000107581|ENST00000369144|EIF3A REV__ENSG00000107581|ENST00000369144|EIF3A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.8773498535156 3 397.211906 1188.61389 0.31206 0.00012395 -1.8423 -0.00073178 -1.5302 -0.00060782 397.2113753857234 2.8511 0.044671 0.36913 0.3322 0.37687 -2.482 25 17 2 0 0 0 0.23991 1 1436 1436 0.62683 0.063655 1 2742600 + 24678 18565 16775 17094 29090 29090 0.02712495672130899 ITNPFIEL 8 Unmodified _ITNPFIEL_ 0 0 0 SLC18A2|p.G150E|1|0.17|ENSG00000165646|chr10:117244298-117244298|G/A|missense_variant SLC18A2|p.G150E|1|0.17|ENSG00000165646|chr10:117244298-117244298|G/A|missense_variant SLC18A2|p.G150E|1|0.17|ENSG00000165646|chr10:117244298-117244298|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.76611328125 2 473.765843 945.517133 1.1286 0.00053469 -0.50294 -0.00023827 0.62567 0.00029642 473.76546688562644 94.687 1.0704 88.512 87.749 88.82 -6.1757 110 61 2 0 0 0 0.56356 1 62464 62464 29.082 4.4077 1 12335000 24679 30161 16776 17095 29091 29091 0.042195531829861466 ITNYNEPLQ 9 Unmodified _ITNYNEPLQ_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7999267578125 2 546.272021 1090.52949 0.3821 0.00020873 0.83384 0.0004555 1.2159 0.00066423 546.7735414854693 82.971 0.39137 82.474 82.306 82.698 -0.49751 32 15 3 0 0 0 0.17718 1 45477 45477 14.838 0 1 711370 + 24680 20701 16777 17096 29092 29092 -0.012154551446201367 ITNYNEPLQ 9 Unmodified _ITNYNEPLQ_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.272021 1090.52949 0.25227 0.00013781 0.91425 0.00049943 1.1665 0.00063724 546.2723699315757 82.448 0.24997 82.448 82.335 82.585 0 -0.01271 5.8716E-05 NaN 14.838 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 298560 + 24681 20701 16777 17096 -0.012154551446201367 ITPDSIYNESI 11 Unmodified _ITPDSIYNESI_ 0 0 0 REV__nc|ENSG00000067167|Q15629-2|TRAM1 REV__nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.308349609375 2 626.3088 1250.60305 0.49301 0.00030878 -0.25028 -0.00015675 0.24273 0.00015203 626.3083726250337 49.24 0.37411 49.24 49.042 49.416 0 48 17 4 0 0 0 0.62014 1 27065 27065 13.042 3.6593 1 7949600 + 24682 17415 16778 17097 29093 29093 -0.012229514928094432 ITPDSIYNESI 11 Unmodified _ITPDSIYNESI_ 0 0 0 REV__nc|ENSG00000067167|Q15629-2|TRAM1 REV__nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 626.3088 1250.60305 0.65972 0.00041319 -0.47036 -0.00029459 0.18936 0.0001186 626.307909962014 49.755 0.1351 49.362 49.277 49.412 -0.3923 0.06141 -0.00024809 NaN 13.042 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1051700 + 24683 17415 16778 17097 -0.012229514928094432 ITPEALSCSF 10 Carbamidomethyl (C) _ITPEALSC(Carbamidomethyl (C))SF_ ITPEALSC(1)SF ITPEALSC(65)SF 0 1 0 nc|ENSG00000122145|Q9Y458-2|TBX22;ENSG00000122145|ENST00000373296|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 nc|ENSG00000122145|Q9Y458-2|TBX22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7687377929688 2 562.768257 1123.52196 1.1012 0.0006197 0.58942 0.00033171 1.6906 0.00095141 562.7681456868285 48.617 0.35196 43.221 43.039 43.391 -5.3961 42 20 3 0 0 0 0.035736 1 30265 30265 65.235 19.535 1 36873000 24684 3625 16779 17098 29094 29094 360 -0.03485930736565024 ITPEMAASSSF 11 Unmodified _ITPEMAASSSF_ 0 0 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7650756835938 2 570.765714 1139.51688 -0.44889 -0.00025621 -0.085266 -4.8667E-05 -0.53415 -0.00030488 570.7656928054529 30.144 0.38918 30.144 29.974 30.363 0 41 18 3 0 0 0 0.12183 2 15599 15599;15700 39.95 15.929 1 8085000 24685 2573 16780 17099 29095;29096 29095 -0.04730234599173855 ITPLPAELIY 10 Unmodified _ITPLPAELIY_ 0 0 0 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2222290039062 3 377.221631 1128.64306 1.6903 0.00063761 2.7286 0.0010293 4.4189 0.0016669 377.22197087060374 21.648 0.34221 18.914 18.711 19.054 -2.7348 52 22 3 0 0 0 0.52888 1 11656 11656 12.873 0 1 5768400 + 24686 24256 16781 17100 29097 29097 0.08388639968438838 ITPNQRLEGA 10 Unmodified _ITPNQRLEGA_ 0 0 0 REV__ENSG00000128536|ENST00000317716|CDHR3 REV__ENSG00000128536|ENST00000317716|CDHR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8680114746094 3 366.86825 1097.58292 NaN NaN NaN NaN NaN NaN NaN 26.548 1 26.575 26.075 27.075 0.026951 0 0 0 0.95736 1 13773 13773 5.0475 1.2016 1 + 24687 19614 16782 17101 29098 29098 0.03803342357900874 ITPNTYYFL 9 Unmodified _ITPNTYYFL_ 0 0 0 ENST00000367568.4_1_6:144509016-144509238:+|nuORF ENST00000367568.4_1_6:144509016-144509238:+|nuORF ENST00000367568.4_1_6:144509016-144509238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2904663085938 2 566.289682 1130.56481 0.86661 0.00049075 -0.092855 -5.2583E-05 0.77375 0.00043817 566.2899621441718 81.797 0.74822 81.302 80.95 81.698 -0.4952 96 29 4 0 0 0 0.18144 1 44858 44858 26.884 0 1 11996000 24688 12242 16783 17102 29099 29099 0.00475207383169618 ITPNTYYFL 9 Unmodified _ITPNTYYFL_ 0 0 0 ENST00000367568.4_1_6:144509016-144509238:+|nuORF ENST00000367568.4_1_6:144509016-144509238:+|nuORF ENST00000367568.4_1_6:144509016-144509238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2914428710938 2 566.289682 1130.56481 1.3986 0.000792 0.70895 0.00040147 2.1075 0.0011935 566.2900001969412 81.225 0.99336 81.285 80.866 81.86 0.059929 135 38 5 0 0 0 0.13231 1 44750 44750 32.305 8.2849 1 132710000 24689 12242 16783 17102 29100 29100 0.00475207383169618 ITPTSSWII 9 Unmodified _ITPTSSWII_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2838439941406 2 509.2844 1016.55425 0.073217 3.7288E-05 -0.276 -0.00014057 -0.20279 -0.00010328 509.28415695835525 67.048 0.27733 66.565 66.377 66.654 -0.48323 19 12 2 0 0 0 0.14602 1 36600 36600 28.487 5.3384 1 1116100 + 24690 22433 16784 17103 29101 29101 0.04663224728756177 ITPTSSWII 9 Unmodified _ITPTSSWII_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.2844 1016.55425 0.54979 0.00028 -0.38156 -0.00019432 0.16823 8.5675E-05 509.28413402297565 66.575 0.30434 66.575 66.421 66.725 0 0.0047759 -3.922E-05 NaN 28.487 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3549900 + 24691 22433 16784 17103 0.04663224728756177 ITPTSSWII 9 Unmodified _ITPTSSWII_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.2844 1016.55425 0.073217 3.7288E-05 -0.276 -0.00014057 -0.20279 -0.00010328 509.28415695835525 67.048 0.27733 66.565 66.377 66.654 -0.48323 -0.0047759 6.8297E-05 NaN 28.487 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1116100 + 24692 22433 16784 17103 0.04663224728756177 ITPVRHSSH 9 Unmodified _ITPVRHSSH_ 0 0 0 ENST00000505193.1_1_4:73307870-73433103:-|nuORF ENST00000505193.1_1_4:73307870-73433103:-|nuORF ENST00000505193.1_1_4:73307870-73433103:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.28125 2 517.280515 1032.54648 0.30052 0.00015545 0.92761 0.00047983 1.2281 0.00063529 517.2808376373849 76.985 0.76303 76.985 76.637 77.4 0 185 42 5 0 0 0 0.25681 1 42852 42852 19.257 19.257 1 877920000 24693 14510 16785 17104 29102 29102 0.03150510251862215 ITQFGKTQI 9 Unmodified _ITQFGKTQI_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2625732421875 2 518.295299 1034.57605 0.18841 9.7651E-05 -1.8226 -0.00094464 -1.6342 -0.00084699 518.294081919017 54.103 0.27835 53.636 53.487 53.765 -0.46664 19 13 2 0 0 0 0.17718 1 29226 29226 14.838 6.0929 1 1522100 + 24694 23742 16786 17105 29103 29103 0.060140294773418645 ITQIMFMRQE 10 Unmodified _ITQIMFMRQE_ 0 0 0 REV__ENSG00000152104|ENST00000366956|PTPN14 REV__ENSG00000152104|ENST00000366956|PTPN14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8849792480469 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 23.198 1 23.216 22.716 23.716 0.01749 0 0 0 0.99008 1 11941 11941 1.7423 0.96574 1 + 24695 21103 16787 17106 29104 29104 0.0006205547374520393 ITQSKRDY 8 Unmodified _ITQSKRDY_ 0 0 0 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 REV__nc|ENSG00000083544|Q9H7E2-2|TDRD3 MSMS AL20221201_MKP_PDAC_01 4 505.7668151855469 2 505.766906 1009.51926 NaN NaN NaN NaN NaN NaN NaN 73.606 1 67.43 66.93 67.93 -6.1757 0 0 0 0.9192 1 48132 48132 16.942 2.3606 1 + 24696 17721 16788 17107 29105 29105 0.014879819208090339 ITRAALEL 8 Unmodified _ITRAALEL_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2225341796875 2 443.77146 885.528367 0.77884 0.00034563 0.24974 0.00011083 1.0286 0.00045646 443.77140128459115 50.062 0.18475 49.669 49.568 49.753 -0.3923 14 8 2 0 0 0 8.7369 1 26903 26903 5.2969 1.3525 1 1208000 + 24697 21763 16789 17108 29106 29106 0.08102375277132978 ITRCKWLDF 9 Unmodified _ITRCKWLDF_ 0 0 0 ENST00000413818.2_1_20:45981315-45981879:+|nuORF ENST00000413818.2_1_20:45981315-45981879:+|nuORF ENST00000413818.2_1_20:45981315-45981879:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.5409851074219 3 394.54271 1180.6063 NaN NaN NaN NaN NaN NaN NaN 78.239 1 72.063 71.563 72.563 -6.1757 0 0 0 0.6306 1 51203 51203 7.609 0 1 24698 13004 16790 17109 29107 29107 0.023220648708502267 ITRRWNAI 8 Unmodified _ITRRWNAI_ 0 0 0 ENST00000264501.8_2_4:123274113-123274284:+|nuORF ENST00000264501.8_2_4:123274113-123274284:+|nuORF ENST00000264501.8_2_4:123274113-123274284:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3032836914062 2 515.30125 1028.58795 0.79538 0.00040986 -0.10921 -5.6275E-05 0.68617 0.00035359 515.3011079125572 63.397 0.3379 57.221 57 57.338 -6.1757 47 19 3 0 0 0 0.52622 1 41061 41061 32.305 2.4649 1 41052000 24699 11314 16791 17110 29108 29108 0.07479691011167233 ITRRWNAIWR 10 Unmodified _ITRRWNAIWR_ 0 0 0 ENST00000264501.8_2_4:123274113-123274284:+|nuORF ENST00000264501.8_2_4:123274113-123274284:+|nuORF ENST00000264501.8_2_4:123274113-123274284:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.9284973144531 3 457.930067 1370.76837 NaN NaN NaN NaN NaN NaN NaN 16.552 1 16.553 16.053 17.053 0.0010548 0 0 0 0.99897 1 8168 8168 0.77653 0 1 24700 11314 16792 17111 29109 29109 0.09781789667999874 ITRWTNAV 8 Unmodified _ITRWTNAV_ 0 0 0 REV__ENSG00000161594|ENST00000293303|KLHL10 REV__ENSG00000161594|ENST00000293303|KLHL10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7670288085938 2 480.766709 959.518865 0.57418 0.00027605 -0.80065 -0.00038493 -0.22647 -0.00010888 480.76626401449204 74.042 0.3771 74.042 73.856 74.233 0 30 17 2 0 0 0 0.77907 1 41283 41283 10.183 1.5901 1 2374200 + 24701 21598 16793 17112 29110 29110 0.037486069915985354 ITSIQEAEEY 10 Unmodified _ITSIQEAEEY_ 0 0 0 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 ENSG00000087301|ENST00000281741|TXNDC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8560180664062 3 394.855676 1181.5452 0.4168 0.00016457 1.7904 0.00070693 2.2072 0.00087151 394.85612336016027 23.915 0.24767 21.088 20.966 21.213 -2.8273 26 14 2 0 0 0 0.34249 1 12946 12946 17.049 6.1496 1 4992900 24702 1465 16794 17113 29111 29111 -0.03831213418220614 ITSNYWKFSD 10 Unmodified _ITSNYWKFSD_ 0 0 0 ENSG00000070731|ENST00000225276|ST6GALNAC2 ENSG00000070731|ENST00000225276|ST6GALNAC2 ENSG00000070731|ENST00000225276|ST6GALNAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.8678283691406 3 420.868027 1259.58225 -0.4584 -0.00019292 -0.58796 -0.00024746 -1.0464 -0.00044038 420.8677668244147 24.944 0.20733 24.944 24.844 25.051 0 50 26 2 0 0 0 0.67459 1 12749 12749 3.0723 3.0723 1 4585100 24703 1036 16795 17114 29112 29112 -0.037154970818164657 ITTDVNPYY 9 Unmodified _ITTDVNPYY_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.26171875 2 543.261122 1084.50769 0.15054 8.1783E-05 -3.8269 -0.002079 -3.6763 -0.0019972 543.2586514178217 46.934 0.40731 46.934 46.718 47.125 0 26 19 2 0 0 0 0.019303 1 25609 25609 64.236 29.835 1 20166000 24704 4530 16796 17115 29113 29113 -0.03118259893199138 ITTGPAGHLL 10 Unmodified _ITTGPAGHLL_ 0 0 0 REV__ENST00000475696.5_1_2:220110721-220112662:+|nuORF REV__ENST00000475696.5_1_2:220110721-220112662:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2812194824219 2 490.282192 978.549831 0.63839 0.00031299 -1.2181 -0.00059719 -0.57968 -0.0002842 490.28113273933656 51.025 0.2915 51.025 50.875 51.167 0 25 14 3 0 0 0 0.31022 1 28162 28162 26.884 9.9414 1 6180100 + 24705 27580 16797 17116 29114 29114 0.05969760305856653 ITTIDKLAF 9 Unmodified _ITTIDKLAF_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7506713867188 2 511.30005 1020.58555 0.43162 0.00022069 -2.2884 -0.0011701 -1.8568 -0.00094938 511.79903472399906 52.234 0.16266 51.801 51.709 51.871 -0.43367 14 7 3 0 0 0 0.20528 1 28164 28164 8.5933 1.304 1 483630 24706 9955 16798 17117 29115 29115 0.07607797762852897 ITTSEQNMTY 10 Unmodified _ITTSEQNMTY_ 0 0 0 REV__ENSG00000146376|ENST00000368149|ARHGAP18 REV__ENSG00000146376|ENST00000368149|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5143737792969 3 396.513144 1186.5176 -0.07306 -2.8969E-05 0.089196 3.5367E-05 0.016136 6.3983E-06 396.51336567301803 61.868 0.22233 61.868 61.751 61.974 0 18 9 2 0 0 0 0.42068 1 34521 34521 12.873 5.3955 1 1273200 + 24707 20828 16799 17118 29116 29116 -0.0681943995009533 ITTWHKSL 8 Unmodified _ITTWHKSL_ 0 0 0 ENST00000483834.1_1_3:52274882-52275008:+|nuORF ENST00000483834.1_1_3:52274882-52275008:+|nuORF ENST00000483834.1_1_3:52274882-52275008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2778625488281 2 493.276909 984.539266 NaN NaN NaN NaN NaN NaN NaN 54.652 1 54.185 53.685 54.685 -0.46664 0 0 0 0.94061 1 29622 29622 12.532 0 1 24708 14140 16800 17119 29117 29117 0.04637777651419128 ITVDTVLIL 9 Unmodified _ITVDTVLIL_ 0 0 0 nc|ENSG00000104691|O00124-2|UBXN8;nc|ENSG00000104691|O00124-3|UBXN8;nc|ENSG00000104691|O00124|UBXN8;ENSG00000104691|ENST00000265616|UBXN8 nc|ENSG00000104691|O00124-2|UBXN8 nc|ENSG00000104691|O00124-2|UBXN8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.615478515625 1 986.613225 985.605948 0.89934 0.0008873 1.1943 0.0011783 2.0936 0.0020656 986.6143701696092 102.19 0.11492 96.016 95.957 96.072 -6.1757 11 4 3 0 0 0 0.0083087 1 68585 68585 97.075 11.718 1 26502000 24709 2223 16801 17120 29118 29118 0.11256968422662794 ITVFEDSLYW 10 Unmodified _ITVFEDSLYW_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8141479492188 2 636.810979 1271.6074 0.98584 0.00062779 2.7889 0.001776 3.7747 0.0024038 636.8130499920079 71.359 0.25747 65.183 65.066 65.324 -6.1757 18 12 2 0 0 0 0.33553 1 46684 46684 25.399 6.1423 1 13543000 24710 4619 16802 17121 29119 29119 -0.017534422792323312 ITVFWKELI 9 Unmodified _ITVFWKELI_ 0 0 0 ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8414916992188 2 574.839342 1147.66413 1.2073 0.000694 -0.93145 -0.00053544 0.27584 0.00015856 574.8387717426252 91.951 0.77051 85.775 85.331 86.101 -6.1757 110 44 3 0 0 0 0.01958 3 60601 60601;60727;60859 61.357 12.575 1 50233000 24711 3563 16803 17122 29120;29121;29122 29120 0.0962065006795001 ITVVFALDL 9 Unmodified _ITVVFALDL_ 0 0 0 REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF REV__ENST00000263238.6_1_2:114713257-114715078:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.2821655273438 2 495.797143 989.579734 1.6639 0.00082494 -2.4513 -0.0012154 -0.78746 -0.00039042 495.7955563351466 41.77 0.34707 37.162 37.03 37.377 -4.6079 31 21 2 0 0 0 0.11012 1 25248 25248 21.747 5.8995 1 6910500 + 24712 25045 16804 17123 29123 29123 0.0845269925117691 ITWSTENNCK 10 Unmodified _ITWSTENNCK_ 0 0 0 REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2755126953125 2 598.274238 1194.53392 0.51955 0.00031083 0.21183 0.00012673 0.73138 0.00043756 598.2743831694099 87.618 0.31565 87.114 86.97 87.286 -0.50423 41 14 4 0 0 0 0.69064 1 47907 47907 3.9444 1.6417 1 968320 + 24713 20018 16805 17124 29124 29124 -0.05556313993361073 ITYHNELDMN 10 Unmodified _ITYHNELDMN_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.1890563964844 3 417.188772 1248.54449 0.2125 8.8654E-05 0.72011 0.00030042 0.93261 0.00038908 417.18901032469205 40.018 0.4301 39.72 39.512 39.942 -0.29716 71 20 5 0 0 0 0.57893 1 21064 21064 7.4771 0.85361 1 110890000 24714 903 16806 17125 29125 29125 -0.0698433133893559 ITYLDHNNFW 10 Unmodified _ITYLDHNNFW_ 0 0 0 nc|ENSG00000069535|P27338-2|MAOB;ENSG00000069535|ENST00000378069|MAOB nc|ENSG00000069535|P27338-2|MAOB nc|ENSG00000069535|P27338-2|MAOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.810791015625 2 661.811845 1321.60914 0.48726 0.00032248 -1.2302 -0.00081419 -0.74298 -0.00049171 661.8109463196932 88.176 0.38551 87.672 87.439 87.825 -0.50423 38 16 3 0 0 0 0.69377 1 48267 48267 3.5965 0.31518 1 1385300 24715 1005 16807 17126 29126 29126 -0.038803884706339886 ITYLTRNL 8 Unmodified _ITYLTRNL_ 0 0 0 REV__ENST00000462265.5_1_1:241761073-241761154:-|nuORF REV__ENST00000462265.5_1_1:241761073-241761154:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.2897644042969 2 497.290017 992.565481 NaN NaN NaN NaN NaN NaN NaN 18.206 1 15.584 15.084 16.084 -2.6215 0 0 0 0.95973 1 9577 9577 8.5933 3.3626 1 + 24716 27334 16808 17127 29127 29127 0.06890046822900331 ITYLVDTTI 9 Unmodified _ITYLVDTTI_ 0 0 0 REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF REV__ENST00000568980.1_1_15:34781792-34782686:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.76123046875 2 519.789515 1037.56448 0.99526 0.00051733 1.2425 0.00064583 2.2377 0.0011632 519.7886564876248 83.994 0.48179 77.818 77.606 78.088 -6.1757 55 25 3 0 0 0 0.18521 1 55238 55238 16.942 0 1 15879000 + 24717 18377 16809 17128 29128 29128 0.04719787663339048 ITYRLPELD 9 Unmodified _ITYRLPELD_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000597572.1_1_19:17321325-17322591:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8738403320312 3 373.873001 1118.59717 1.4193 0.00053064 0.53533 0.00020015 1.9546 0.00073079 373.8733236792425 19.039 0.42961 16.418 16.205 16.634 -2.6215 90 27 5 0 0 0 0.39143 1 10076 10076 12.873 0.69786 1 71209000 24718 1694 16810 17129 29129 29129 0.0426199478615672 ITYSITFLL 9 Unmodified _ITYSITFLL_ 0 0 0 nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8115234375 2 535.810251 1069.60595 0.95669 0.0005126 0.2186 0.00011713 1.1753 0.00062973 535.8103082215779 50.574 0.30189 50.52 50.347 50.648 -0.053871 35 14 3 0 0 0 0.49272 1 27299 27299 7.9102 2.1497 1 6840800 24719 15213;16182 16811 17130 29130 29130 0.07392968422664126 IVAAGVAYV 9 Unmodified _IVAAGVAYV_ 0 0 0 REV__ENST00000381222.8_2_X:2408799-2418966:-|nuORF REV__ENST00000381222.8_2_X:2408799-2418966:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 862.50146484375 1 862.503281 861.496004 0.37772 0.00032579 -1.2311 -0.0010618 -0.8534 -0.00073606 862.5023270421124 72.99 0.32447 73.032 72.88 73.205 0.041733 24 15 2 0 0 0 0.1492 2 40148 40148;40269 28.173 7.302 1 4806000 + 24720 22372 16812 17131 29131;29132 29131 0.059715878741258166 IVAAMKAHGV 10 Unmodified _IVAAMKAHGV_ 0 0 0 ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB ENSG00000090013|ENST00000263368|BLVRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2885131835938 2 498.786587 995.558621 0.31104 0.00015514 -1.1894 -0.00059328 -0.8784 -0.00043814 498.78595074249915 81.16 0.34605 81.16 81.024 81.37 0 29 16 2 0 0 0 0.71276 1 45023 45023 1.4819 0.68827 1 741920 24721 1544 16813 17132 29133 29133 0.06066410670678124 IVADHVASY 9 Unmodified _IVADHVASY_ 0 0 0 nc|ENSG00000237541|P01909|HLA-DQA1;ENSG00000237541|ENST00000374940|HLA-DQA2 nc|ENSG00000237541|P01909|HLA-DQA1 nc|ENSG00000237541|P01909|HLA-DQA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7507934570312 2 487.750724 973.486896 -0.32111 -0.00015662 1.5717 0.00076659 1.2506 0.00060997 487.75095895672024 29.646 0.12511 29.646 29.597 29.722 0 15 6 3 0 0 0 0.047196 1 15380 15380 46.021 22.873 1 2475300 24722 16565 16814 17133 29134 29134 -0.0009080548219344564 IVADVALM 8 Oxidation (M) _IVADVALM(Oxidation (M))_ IVADVALM(1) IVADVALM(63) 0 0 1 REV__ENST00000429127.2_1_12:8167969-8168583:+|nuORF REV__ENST00000429127.2_1_12:8167969-8168583:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 847.4598999023438 1 847.459367 846.45209 0.12724 0.00010783 0.50059 0.00042423 0.62783 0.00053206 847.4599820035569 68.674 0.35096 68.674 68.487 68.838 0 35 15 3 0 0 0 0.24182 1 38305 38305 63.394 13.725 1 1664700 + 24723 20703 16815 17134 29135 29135 1843 0.022722353854987887 IVARLFERY 9 Unmodified _IVARLFERY_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5614318847656 3 389.560869 1165.66078 0.93061 0.00036253 -0.12173 -4.7423E-05 0.80887 0.0003151 389.56082783845034 46.434 0.22421 46.401 46.286 46.51 -0.033421 26 10 3 0 0 0 0.19349 1 24983 24983 23.801 9.3957 1 3416000 24724 4529 16816 17135 29136 29136 0.0845740001395825 IVCGPNRV 8 Unmodified _IVCGPNRV_ 0 0 0 REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8916015625 2 429.23673 856.458907 -0.15054 -6.4619E-05 -2.0533 -0.00088136 -2.2039 -0.00094598 429.2358238635569 53.843 0.22894 53.776 53.672 53.901 -0.066936 16 11 2 0 0 0 8.7369 1 29217 29217 2.5775 0 1 1188100 + 24725 20537 16817 17136 29137 29137 0.02493593056726695 IVDAGFGR 8 Unmodified _IVDAGFGR_ 0 0 0 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 834.4483032226562 1 834.446828 833.439552 0.66158 0.00055205 -0.3493 -0.00029147 0.31228 0.00026058 834.4463827831119 68.128 0.43288 61.952 61.737 62.17 -6.1757 40 25 2 0 0 0 0.32798 1 44355 44355 52.268 3.9225 1 20101000 24726 8096 16818 17137 29138 29138 0.016169600374723814 IVDANLSVL 9 Unmodified _IVDANLSVL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.5430297851562 1 943.545874 942.538597 -0.47556 -0.00044872 1.1689 0.0011029 0.69336 0.00065421 943.5472256829659 71.542 0.26673 71.542 71.405 71.672 0 19 11 2 0 0 0 0.34999 1 39826 39826 14.838 0 1 744080 24727 4904 16819 17138 29139 29139 0.06502938211713172 IVDANLSVL 9 Unmodified _IVDANLSVL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6;ENST00000464444.1_1_19:13005132-13005321:+|nuORF ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 943.545874 942.538597 0.49302 0.00046519 1.3094 0.0012355 1.8025 0.0017007 943.5473569254578 71.997 0.24525 71.521 71.415 71.66 -0.47609 -0.010732 9.3346E-05 NaN 14.838 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 987680 24728 4904 16819 17138 0.06502938211713172 IVDGAVVKF 9 Unmodified _IVDGAVVKF_ 0 0 0 nc|ENSG00000018610|Q9H5V9-2|STEEP1;nc|ENSG00000018610|Q9H5V9-3|STEEP1;ENSG00000018610|ENST00000644802|STEEP1 nc|ENSG00000018610|Q9H5V9-2|STEEP1 nc|ENSG00000018610|Q9H5V9-2|STEEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2816772460938 2 474.28166 946.548768 0.39952 0.00018949 0.22138 0.000105 0.6209 0.00029448 474.2816053783963 51.918 0.24759 51.485 51.364 51.612 -0.43367 22 12 2 0 0 0 0.06294 1 28012 28012 41.84 7.7372 1 4220200 24729 511 16820 17139 29140 29140 0.07335545936962262 IVDGNHRLTL 10 Unmodified _IVDGNHRLTL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.884033203125 3 379.884012 1136.63021 -0.30625 -0.00011634 1.6466 0.00062552 1.3404 0.00050918 379.8843540274598 34.893 0.36154 34.701 34.564 34.926 -0.19131 44 15 4 0 0 0 0.12064 1 18225 18225 43.477 17.209 1 12918000 24730 3108;8374;6730 16821 17140 29141 29141 0.06735621628899935 IVDGNHRLTL 10 Unmodified _IVDGNHRLTL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8846740722656 3 379.884012 1136.63021 1.0079 0.0003829 0.56072 0.00021301 1.5687 0.00059591 379.8842578069343 38.837 0.42497 34.386 34.191 34.616 -4.4509 62 26 4 0 0 0 0.14944 1 22941 22941 39.923 17.187 1 60245000 24731 3108;8374;6730 16821 17140 29142 29142 0.06735621628899935 IVDGNHRLTL 10 Unmodified _IVDGNHRLTL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000160460|Q9H254-2|SPTBN4 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3228149414062 2 569.32238 1136.63021 0.66534 0.00037879 -0.061296 -3.4897E-05 0.60405 0.0003439 569.3225251979471 38.822 0.24105 34.371 34.282 34.523 -4.4509 24 14 2 0 0 0 0.017314 1 22965 22965 70.929 30.971 1 8099500 24732 3108;8374;6730 16821 17140 29143 29143 0.06735621628899935 IVDGQAFSLL 10 Unmodified _IVDGQAFSLL_ 0 0 0 REV__ENSG00000006453|ENST00000005260|BAIAP2L1 REV__ENSG00000006453|ENST00000005260|BAIAP2L1 MSMS AL20221201_MKP_PDAC_01 4 531.7931518554688 2 531.795132 1061.57571 NaN NaN NaN NaN NaN NaN NaN 68.659 1 62.483 61.983 62.983 -6.1757 0 0 0 0.31648 1 44824 44824 36.127 3.3413 1 + 24733 16989 16822 17141 29144 29144 0.04738609757487211 IVDHTIIMY 9 Oxidation (M) _IVDHTIIM(Oxidation (M))Y_ IVDHTIIM(1)Y IVDHTIIM(60)Y 0 0 1 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7897338867188 2 560.788992 1119.56343 0.77163 0.00043272 -0.34828 -0.00019531 0.42335 0.00023741 560.7887811815237 46.622 0.34933 46.285 46.093 46.442 -0.33664 52 17 4 0 0 0 0.023164 2 24904 24904;25005 60.39 24.345 1 14368000 24734 4479 16823 17142 29145;29146 29145 817 0.008432500227854689 IVDHTIIMY 9 Oxidation (M) _IVDHTIIM(Oxidation (M))Y_ IVDHTIIM(1)Y IVDHTIIM(71)Y 0 0 1 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7913818359375 2 560.788992 1119.56343 1.0742 0.00060243 0.81774 0.00045858 1.892 0.001061 560.7896727018641 52.506 0.35555 46.772 46.635 46.99 -5.7345 30 19 2 0 0 0 0.013472 2 33152 33139;33152 70.716 13.064 1 39433000 24735 4479 16823 17142 29147;29148 29148 817 0.008432500227854689 IVDQCDASAEQ 11 Unmodified _IVDQCDASAEQ_ 0 0 0 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 REV__nc|ENSG00000085382|Q8IYU2-4|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7523193359375 2 589.753335 1177.49212 -0.63359 -0.00037366 -0.53661 -0.00031647 -1.1702 -0.00069013 589.7527377344298 48.645 0.36653 48.645 48.394 48.761 0 43 17 4 0 0 0 0.42108 1 26714 26714 20.415 4.2654 1 12317000 + 24736 17748 16824 17143 29149 29149 -0.08952914472547491 IVDQVHVL 8 Unmodified _IVDQVHVL_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.7719421386719 2 461.77146 921.528367 0.63727 0.00029427 0.30389 0.00014033 0.94117 0.0004346 461.77155077875705 49.601 0.40866 49.209 49.022 49.431 -0.3923 70 20 5 0 0 0 0.40035 1 26721 26721 44.407 0 1 45201000 + 24737 24540 16825 17144 29150 29150 0.06446375277153038 IVDWLPQSDLL 11 Unmodified _IVDWLPQSDLL_ 0 0 0 ENSG00000145626|ENST00000274278|UGT3A1;nc|ENSG00000168671|Q3SY77-2|UGT3A2;ENSG00000168671|ENST00000282507|UGT3A2 ENSG00000145626|ENST00000274278|UGT3A1 ENSG00000145626|ENST00000274278|UGT3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.85205078125 2 649.853178 1297.6918 -0.029908 -1.9436E-05 1.0534 0.00068454 1.0235 0.0006651 649.8537136636046 81.968 0.27473 81.968 81.857 82.132 0 40 15 3 0 0 0 0.66968 1 45448 45448 7.1017 1.8048 1 1242500 24738 5708 16826 17145 29151 29151 0.05486508537546797 IVECTRNNI 9 Unmodified _IVECTRNNI_ 0 0 0 REV__ENSG00000081923|ENST00000648908|ATP8B1 REV__ENSG00000081923|ENST00000648908|ATP8B1 MSMS AL20221201_MKP_PDAC_01 4 531.272705078125 2 531.274041 1060.53353 NaN NaN NaN NaN NaN NaN NaN 80.764 1 74.588 74.088 75.088 -6.1757 0 0 0 0.20498 1 52991 52991 30.225 6.2042 1 + 24739 17699 16827 17146 29152 29152 0.005683110774270972 IVEDGGHVF 9 Unmodified _IVEDGGHVF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7429504394531 2 486.742899 971.471246 0.68366 0.00033277 1.0994 0.00053512 1.7831 0.00086789 486.74331126678385 36.686 0.40829 36.686 36.409 36.818 0 43 19 3 0 0 0 0.078417 1 19465 19465 38.151 15.003 1 10446000 24740 10934 16828 17147 29153 29153 -0.015630919992190684 IVEFRVVRY 9 Unmodified _IVEFRVVRY_ 0 0 0 REV__ENSG00000101337|ENST00000398022|TM9SF4 REV__ENSG00000101337|ENST00000398022|TM9SF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2330017089844 3 394.232752 1179.67643 NaN NaN NaN NaN NaN NaN NaN 57.685 1 57.685 57.185 58.185 0 0 0 0 0.82015 1 32104 32104 2.9952 0.26005 1 + 24741 18161 16829 17148 29154 29154 0.0937768653097919 IVEPEKTTAEF 11 Unmodified _IVEPEKTTAEF_ 0 0 0 ENSG00000066056|ENST00000372476|TIE1 ENSG00000066056|ENST00000372476|TIE1 ENSG00000066056|ENST00000372476|TIE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2232055664062 3 421.887088 1262.63943 0.31446 0.00013266 1.3977 0.00058967 1.7122 0.00072234 421.88767281868564 40.961 0.61169 40.658 40.397 41.009 -0.30304 88 29 4 0 0 0 0.59689 1 21577 21577 6.2344 0.36622 1 40260000 24742 926 16830 17149 29155 29155 0.018619254039094812 IVEPRKRQY 9 Unmodified _IVEPRKRQY_ 0 0 0 ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF ENSG00000198796|ENST00000361673|ALPK2 ENSG00000198796|ENST00000361673|ALPK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8999633789062 3 396.899773 1187.67749 1.1454 0.00045459 -0.63839 -0.00025338 0.50697 0.00020122 396.8993043696432 32.171 0.27124 28.315 28.161 28.432 -3.8562 18 15 2 0 0 0 0.44883 1 18349 18349 10.151 1.7063 1 11624000 24743 10154 16831 17150 29156 29156 0.09115900899882945 IVEPRKRQY 9 Unmodified _IVEPRKRQY_ 0 0 0 ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF ENSG00000198796|ENST00000361673|ALPK2 ENSG00000198796|ENST00000361673|ALPK2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 396.899773 1187.67749 1.1454 0.00045459 -0.63839 -0.00025338 0.50697 0.00020122 396.8993043696432 32.171 0.27124 28.315 28.161 28.432 -3.8562 -0.1148 -0.00094762 NaN 10.151 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 11624000 24744 10154 16831 17150 0.09115900899882945 IVEPSVHTY 9 Unmodified _IVEPSVHTY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7714233398438 2 522.771657 1043.52876 -0.15199 -7.9454E-05 3.877 0.0020268 3.725 0.0019473 522.7736463376821 35.036 0.38124 35.036 34.827 35.209 0 52 19 4 0 0 0 0.0088975 1 18475 18475 104.8 59.1 1 18213000 24745 1378 16832 17151 29157 29157 0.008737502063468128 IVEYPFDL 8 Unmodified _IVEYPFDL_ 0 0 0 ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2573852539062 2 498.257851 994.501149 0.19138 9.5358E-05 -0.85923 -0.00042812 -0.66784 -0.00033276 498.25739374659275 70.023 0.72118 70.023 69.797 70.518 0 184 65 3 0 0 0 0.6895 1 39040 39040 18.135 18.135 1 57331000 24746 13443 16833 17152 29158 29158 0.0036784694608513746 IVEYPFDL 8 Unmodified _IVEYPFDL_ 0 0 0 ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2590942382812 2 498.257851 994.501149 0.15247 7.5968E-05 -0.71997 -0.00035873 -0.5675 -0.00028276 498.25746202306556 70.506 0.78757 70.028 69.759 70.547 -0.47735 126 53 3 0 0 0 0.44122 1 38492 38492 40.449 2.4746 1 64130000 24747 13443 16833 17152 29159 29159 0.0036784694608513746 IVEYPFDL 8 Unmodified _IVEYPFDL_ 0 0 0 ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENST00000444815.2_1_2:132181395-132181932:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2586669921875 2 498.257851 994.501149 0.47406 0.0002362 0.98886 0.00049271 1.4629 0.00072891 498.2583338084182 78.385 0.97485 72.209 71.737 72.712 -6.1757 151 58 3 0 0 0 0.5284 3 51334 51334;51467;51596 32.117 5.7757 1 80253000 24748 13443 16833 17152 29160;29161;29162 29160 0.0036784694608513746 IVFDDEFFF 9 Unmodified _IVFDDEFFF_ 0 0 0 REV__nc|ENSG00000148429|Q92738-2|USP6NL REV__nc|ENSG00000148429|Q92738-2|USP6NL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7738647460938 2 589.773865 1177.53318 NaN NaN NaN NaN NaN NaN NaN 11.911 1 11.911 11.411 12.411 0 0 0 0 0.8622 1 5645 5645 0 0 1 + 24749 20953 16834 17153 29163 29163 -0.0484878537079112 IVFLCHKFIL 10 Unmodified _IVFLCHKFIL_ 0 0 0 REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.9136047363281 3 411.578984 1231.71512 0.031543 1.2983E-05 0.429 0.00017657 0.46055 0.00018955 411.5792067027288 27.871 0.21356 27.901 27.799 28.012 0.029564 20 8 3 0 0 0 0.55245 1 14498 14498 13.615 0 1 10620000 + 24750 29037 16835 17154 29164 29164 0.1085327584114566 IVHQINDYF 9 Unmodified _IVHQINDYF_ 0 0 0 REV__ENSG00000102763|ENST00000379310|VWA8 REV__ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5308532714844 3 383.529346 1147.56621 0.74002 0.00028382 2.7993 0.0010736 3.5393 0.0013574 383.53043374177975 22.777 0.32536 19.998 19.792 20.117 -2.7784 26 24 2 0 0 0 0.28047 1 12262 12262 12.241 0 1 3152900 + 24751 18253 16836 17155 29165 29165 -0.0016715852807465126 IVICIVRF 8 Unmodified _IVICIVRF_ 0 0 0 ENST00000317357.9_1_6:107979792-107980005:+|nuORF ENST00000317357.9_1_6:107979792-107980005:+|nuORF ENST00000317357.9_1_6:107979792-107980005:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2953186035156 2 481.796423 961.578294 0.27386 0.00013195 -0.24855 -0.00011975 0.025311 1.2195E-05 481.79636407584707 54.324 0.19622 53.857 53.707 53.904 -0.46664 14 9 2 0 0 0 8.7369 1 29395 29395 5.7604 0 1 3139200 24752 11747 16837 17156 29166 29166 0.09596786681447611 IVIEEKDVVY 10 Unmodified _IVIEEKDVVY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 603.834716796875 2 603.834454 1205.65436 NaN NaN NaN NaN NaN NaN NaN 55.707 1 49.786 49.286 50.286 -5.9211 0 0 0 0.050349 1 35490 35490 57.249 21.122 1 24753 8367 16838 17157 29167 29167 0.059754172719067356 IVIGVLHQL 9 Unmodified _IVIGVLHQL_ 0 0 0 ENST00000585403.5_1_17:40721871-40723618:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000585403.5_1_17:40721871-40723618:+|nuORF ENST00000585403.5_1_17:40721871-40723618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3190002441406 2 496.318577 990.622602 0.48273 0.00023959 0.80795 0.000401 1.2907 0.00064059 496.3189379955004 67.839 0.22861 67.857 67.748 67.976 0.018036 24 10 3 0 0 0 0.031062 1 37254 37254 54.774 14.816 1 2702000 24754 2605 16839 17158 29168 29168 0.12691514099276446 IVIIPRTVI 9 Unmodified _IVIIPRTVI_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.3502197265625 2 512.349877 1022.6852 0.59636 0.00030555 -0.083374 -4.2717E-05 0.51299 0.00026283 512.349773586748 98.596 0.1851 92.421 92.308 92.493 -6.1757 44 13 4 0 0 0 0.017075 1 65361 65361 66.457 1.2217 1 358230000 24755 10210 16840 17159 29169 29169 0.17476660167460523 IVISARWLV 9 Unmodified _IVISARWLV_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5466613769531 3 352.890327 1055.64915 -0.25353 -8.9469E-05 -0.27519 -9.7112E-05 -0.52872 -0.00018658 352.8905283303757 35.932 0.12661 35.957 35.885 36.012 0.024967 14 5 4 0 0 0 0.20207 1 19033 19033 11.495 1.3441 1 2491400 + 24756 19573 16841 17160 29170 29170 0.12355202990579528 IVIYSKQHI 9 Unmodified _IVIYSKQHI_ 0 0 0 nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2229919433594 3 367.553603 1099.63898 1.0697 0.00039317 0.99758 0.00036666 2.0673 0.00075983 367.5536353069051 45.431 0.52304 40.476 40.146 40.669 -4.9549 63 35 3 0 0 0 0.23158 1 27800 27800 14.405 2.9107 1 19229000 24757 5182 16842 17161 29171 29171 0.09314595265368553 IVKCIFIFIVG 11 Unmodified _IVKCIFIFIVG_ 0 0 0 REV__ENST00000332556.4_1_13:113977490-113977697:+|nuORF REV__ENST00000332556.4_1_13:113977490-113977697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.9225463867188 3 417.922639 1250.74609 1.2766 0.00053352 -0.72262 -0.000302 0.55398 0.00023152 417.92208072459533 101.31 0.14597 95.134 95.046 95.192 -6.1757 22 8 3 0 0 0 0.73992 1 67946 67946 0.50596 0.09769 1 75115000 + 24758 25612 16843 17162 29172 29172 0.13074429155358303 IVKPTAGAG 9 Unmodified _IVKPTAGAG_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.48876953125 1 813.482879 812.475603 1.9698 0.0016024 1.9656 0.001599 3.9354 0.0032014 813.4870959418419 93.015 0.12804 93.038 93.003 93.132 0.022987 6 4 2 0 0 0 0.05447 1 51741 51741 43.858 3.901 1 895930 24759 5571 16844 17163 29173 29173 0.06186417214314588 IVKTAGNQKD 10 Unmodified _IVKTAGNQKD_ 0 0 0 nc|ENSG00000175518|Q8IYU4-2|UBQLNL;ENSG00000175518|ENST00000380184|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2976684570312 2 537.301113 1072.58767 0.9312 0.00050033 -1.5269 -0.00082039 -0.59568 -0.00032006 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.38092 1 52685 52685 22.736 0.98964 1 243440000 24760 8523 16845 17164 29174 29174 0.054282265006804664 IVKVFFFK 8 Unmodified _IVKVFFFK_ 0 0 0 ENSG00000171944|ENST00000307388|OR52A5 ENSG00000171944|ENST00000307388|OR52A5 ENSG00000171944|ENST00000307388|OR52A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2799072265625 2 514.320589 1026.62662 NaN NaN NaN NaN NaN NaN NaN 24.684 1 24.684 24.184 25.184 0 0 0 0 0.97444 1 12624 12624 2.3027 0.4585 1 24761 8164 16846 17165 29175 29175 0.1143760359298085 IVLDRLIEL 9 Unmodified _IVLDRLIEL_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3422241210938 2 542.342249 1082.66995 1.3831 0.00075012 0.31631 0.00017155 1.6994 0.00092167 542.3419733083012 98.337 0.088341 92.161 92.102 92.19 -6.1757 8 5 2 0 0 0 0.024189 1 65231 65231 59.368 8.5134 1 10065000 24762 4113 16847 17166 29176 29176 0.1319174857960661 IVLEGKPSP 9 Unmodified _IVLEGKPSP_ 0 0 0 ENST00000472821.5_1_3:149842792-149868317:+|nuORF ENST00000472821.5_1_3:149842792-149868317:+|nuORF ENST00000472821.5_1_3:149842792-149868317:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.280029296875 2 470.279118 938.543683 0.26092 0.0001227 -0.17585 -8.2699E-05 0.085068 4.0006E-05 470.2786129080309 70.485 0.72757 70.008 69.798 70.526 -0.47736 128 50 3 0 0 0 0.009483 1 38487 38487 81.89 7.4939 1 101710000 24763 13913 16848 17167 29177 29177 0.07195242074340058 IVLFKKFYM 9 Unmodified _IVLFKKFYM_ 0 0 0 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8999633789062 3 396.899834 1187.67767 -0.0034336 -1.3628E-06 0.42936 0.00017041 0.42592 0.00016905 396.90005605385176 28.515 0.20634 28.544 28.444 28.651 0.029566 15 7 3 0 0 0 0.49766 1 14871 14871 7.609 2.2062 1 2077100 24764 16509 16849 17168 29178 29178 0.09134184575532345 IVLGSLFLVA 10 Unmodified _IVLGSLFLVA_ 0 0 0 nc|ENSG00000139266|Q86YJ5-2|MARCHF9;ENSG00000139266|ENST00000266643|MARCHF9 nc|ENSG00000139266|Q86YJ5-2|MARCHF9 nc|ENSG00000139266|Q86YJ5-2|MARCHF9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.8184814453125 2 516.328611 1030.64267 1.2436 0.00064212 -1.2358 -0.00063806 0.0078619 4.0593E-06 516.8295247945384 95.449 0.18933 89.273 89.162 89.351 -6.1757 15 10 2 0 0 0 0.19561 1 63158 63158 30.637 0 1 10503000 24765 5142 16850 17169 29179 29179 0.12857265039201593 IVLLLVLAC 9 Unmodified _IVLLLVLAC_ 0 0 0 REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.1575622558594 2 478.814282 955.614011 NaN NaN NaN NaN NaN NaN NaN 109.31 1 103.14 102.64 103.64 -6.1757 0 0 0 0.85737 1 73008 73008 0.6015 0 1 + 24766 20762 16851 17170 29180 29180 0.13442824138428477 IVLNLIFGVI 10 Unmodified _IVLNLIFGVI_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8109130859375 2 550.857535 1099.70052 0.28491 0.00015695 1.1295 0.00062222 1.4145 0.00077916 550.8580591311566 74.666 0.2664 74.712 74.547 74.813 0.045967 24 11 3 0 0 0 0.22507 1 41082 41082 16.942 1.0951 1 1744900 24767 1673;3680;6083 16852 17171 29181 29181 0.15465526964658238 IVLSKLAPLF 10 Unmodified _IVLSKLAPLF_ 0 0 0 REV__nc|ENSG00000114248|Q6UY01-4|LRRC31 REV__nc|ENSG00000114248|Q6UY01-4|LRRC31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8572387695312 2 550.857535 1099.70052 0.19032 0.00010484 -0.7984 -0.0004398 -0.60807 -0.00033496 551.3587369889241 76.147 0.28843 76.195 76.037 76.326 0.047943 19 11 2 0 0 0 0.2178 1 42008 42008 32.305 6.9062 1 5782200 + 24768 18907 16853 17172 29182 29182 0.154655269646355 IVLTDTPC 8 Unmodified _IVLTDTPC_ 0 0 0 REV__ENST00000498213.1_1_10:75336067-75351184:-|nuORF REV__ENST00000498213.1_1_10:75336067-75351184:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 861.4384765625 1 861.438631 860.431355 0.06919 5.9603E-05 -0.12094 -0.00010418 -0.051748 -4.4578E-05 861.4386277404685 72.252 0.33274 72.252 72.054 72.387 0 29 14 3 0 0 0 0.67481 2 40190 40190;40288 19.439 0 1 1557800 + 24769 27992 16854 17173 29183;29184 29183 -0.004443549941811398 IVLTDTPC 8 Unmodified _IVLTDTPC_ 0 0 0 REV__ENST00000498213.1_1_10:75336067-75351184:-|nuORF REV__ENST00000498213.1_1_10:75336067-75351184:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 861.439697265625 1 861.438631 860.431355 0.22188 0.00019114 -0.8857 -0.00076297 -0.66381 -0.00057184 861.4381328850332 72.604 0.3164 72.604 72.433 72.749 0 20 13 2 0 0 0 0.74163 1 40386 40386 13.508 0 1 1250100 + 24770 27992 16854 17173 29185 29185 -0.004443549941811398 IVLTIVEVP 9 Unmodified _IVLTIVEVP_ 0 0 0 REV__ENST00000256433.5_2_18:44682464-44682551:-|nuORF REV__ENST00000256433.5_2_18:44682464-44682551:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.8138732910156 2 491.812793 981.611034 0.45761 0.00022506 0.090324 4.4422E-05 0.54793 0.00026948 491.81270025104214 100.63 0.12896 94.459 94.374 94.503 -6.1757 15 8 2 0 0 0 0.0086629 1 67335 67335 101.72 4.6473 1 41618000 + 24771 24919 16855 17174 29186 29186 0.11949272285278312 IVMETVPVL 9 Oxidation (M) _IVM(Oxidation (M))ETVPVL_ IVM(1)ETVPVL IVM(47)ETVPVL 0 0 1 nc|ENSG00000269335|Q9Y6K9-2|IKBKG;ENSG00000269335|ENST00000594239|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG nc|ENSG00000269335|Q9Y6K9-2|IKBKG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7896118164062 2 508.788461 1015.56237 0.2947 0.00014994 0.38917 0.000198 0.68387 0.00034795 508.7887685080093 65.516 0.32478 65.516 65.37 65.695 0 28 12 3 0 0 0 0.045537 1 36575 36575 46.921 28.786 1 1360100 24772 10878 16856 17175 29187 29187 1734 0.055210356538964334 IVMVNNLLEL 10 Oxidation (M) _IVM(Oxidation (M))VNNLLEL_ IVM(1)VNNLLEL IVM(69)VNNLLEL 0 0 1 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3270874023438 2 587.331024 1172.6475 1.2704 0.00074615 -1.0488 -0.00061598 0.22163 0.00013017 587.329931400004 95.622 0.58934 89.447 89.089 89.678 -6.1757 66 35 3 0 0 0 0.027759 1 63458 63458 69.105 11.383 1 91209000 24773 5494 16857 17176 29188 29188 1009 0.06807781119664469 IVNARGAI 8 Unmodified _IVNARGAI_ 0 0 0 REV__ENSG00000163328|ENST00000392552|GPR155 REV__ENSG00000163328|ENST00000392552|GPR155 MSMS AL20221201_MKP_PDAC_01 4 407.2508239746094 2 407.250695 812.486836 NaN NaN NaN NaN NaN NaN NaN 17.43 1 14.843 14.343 15.343 -2.5866 0 0 0 0.77249 1 9112 9112 24.674 3.8027 1 + 24774 21748 16858 17177 29189 29189 0.07309239308460747 IVNHRLRII 9 Unmodified _IVNHRLRII_ 0 0 0 REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 567.365478515625 2 567.366924 1132.7193 NaN NaN NaN NaN NaN NaN NaN 109.26 1 103.09 102.59 103.59 -6.1757 0 0 0 0.85798 1 72980 72980 0.52476 0.066424 1 + 24775 18598 16859 17178 29190 29190 0.1582450137905198 IVNLVNDIF 9 Unmodified _IVNLVNDIF_ 0 0 0 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 ENSG00000140505|ENST00000343932|CYP1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7974243164062 2 523.797675 1045.5808 -0.18173 -9.5191E-05 -1.3783 -0.00072195 -1.56 -0.00081714 523.7968142604367 51.576 0.33811 51.146 51.011 51.35 -0.42981 30 17 3 0 0 0 0.15471 1 27822 27822 27.629 1.3607 1 2820800 24776 5244 16860 17179 29191 29191 0.059829136200733046 IVNQVATILH 10 Unmodified _IVNQVATILH_ 0 0 0 REV__ENST00000465832.5_1_7:117008647-117066986:-|nuORF REV__ENST00000465832.5_1_7:117008647-117066986:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3296508789062 2 554.329673 1106.64479 1.6196 0.00089781 -0.63563 -0.00035235 0.98401 0.00054546 554.329103836651 105.08 0.13992 98.901 98.816 98.956 -6.1757 41 19 3 0 0 0 0.71413 1 70336 70336 1.3295 0 1 102640000 + 24777 21230 16861 17180 29192 29192 0.09573693777042536 IVNRQLPIKL 10 Unmodified _IVNRQLPIKL_ 0 0 0 REV__ENST00000467391.1_1_20:17950715-17968822:+|nuORF REV__ENST00000467391.1_1_20:17950715-17968822:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3907470703125 2 597.390065 1192.76558 1.08 0.00064521 -0.151 -9.0207E-05 0.92905 0.000555 597.3899434021429 106.07 1.4159 99.897 99.603 101.02 -6.1757 500 236 3 0 0 0 0.72247 1 70896 70896 0.40072 0 1 14298000 + 24778 19524 16862 17181 29193 29193 0.17690521490499123 IVNTKIKKTRI 11 Unmodified _IVNTKIKKTRI_ 0 0 0 ENST00000533043.1_1_11:62099002-62099119:+|nuORF ENST00000533043.1_1_11:62099002-62099119:+|nuORF ENST00000533043.1_1_11:62099002-62099119:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 657.434326171875 2 657.435004 1312.85546 NaN NaN NaN NaN NaN NaN NaN 104.63 1 98.456 97.956 98.956 -6.1757 0 0 0 0.94307 1 70058 70058 0.30703 0.03801 1 24779 14934 16863 17182 29194 29194 0.211541510990628 IVPDSGVTGP 10 Unmodified _IVPDSGVTGP_ 0 0 0 REV__ENST00000565330.5_1_16:2256050-2256424:+|nuORF REV__ENST00000565330.5_1_16:2256050-2256424:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.4938354492188 1 941.493838 940.486562 -0.49998 -0.00047073 -0.7771 -0.00073163 -1.2771 -0.0012024 941.4929112897024 48.866 0.44446 48.866 48.618 49.062 0 73 21 5 0 0 0 0.39779 1 26723 26723 21.747 4.8044 1 70573000 + 24780 22266 16864 17183 29195 29195 0.013937747979639425 IVPDSGVTGP 10 Unmodified _IVPDSGVTGP_ 0 0 0 REV__ENST00000565330.5_1_16:2256050-2256424:+|nuORF REV__ENST00000565330.5_1_16:2256050-2256424:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 943.5008544921875 1 941.493838 940.486562 0.64271 0.00060511 -0.83723 -0.00078825 -0.19452 -0.00018314 941.4925978485069 55.564 0.68156 49.643 49.272 49.953 -5.9211 115 41 4 0 0 0 0.39779 1 35222 35222 21.747 1.293 1 254370000 + 24781 22266 16864 17183 29196 29196 0.013937747979639425 IVPEKKSTL 9 Unmodified _IVPEKKSTL_ 0 0 0 ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3 ENSG00000081026|ENST00000307546|MAGI3 ENSG00000081026|ENST00000307546|MAGI3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2780151367188 2 507.813325 1013.6121 0.13085 6.6449E-05 -0.13931 -7.0743E-05 -0.0084546 -4.2933E-06 507.81340514372334 70.992 0.17657 70.515 70.434 70.611 -0.47735 11 7 2 0 0 0 0.21367 1 38838 38838 4.756 0.81161 1 549010 24782 1314 16865 17184 29197 29197 0.10583486654184071 IVPEKRQY 8 Unmodified _IVPEKRQY_ 0 0 0 REV__nc|ENSG00000089041|Q99572-3|P2RX7 REV__nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2822875976562 2 516.795466 1031.57638 0.27028 0.00013968 2.031 0.0010496 2.3013 0.0011893 516.7965924740832 39.801 0.19236 39.801 39.7 39.892 0 15 9 2 0 0 0 8.7369 1 21407 21407 10.183 0.83596 1 1707700 + 24783 17825 16866 17185 29198 29198 0.06185449197187154 IVPLDNVYI 9 Unmodified _IVPLDNVYI_ 0 0 0 REV__ENSG00000178852|ENST00000331493|EFCAB13 REV__ENSG00000178852|ENST00000331493|EFCAB13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.30029296875 2 523.30005 1044.58555 0.58104 0.00030406 0.1287 6.7347E-05 0.70974 0.00037141 523.3000157904082 99.896 0.58176 93.72 93.432 94.014 -6.1757 93 39 3 0 0 0 0.095405 1 66727 66727 34.102 3.4659 1 2548200000 + 24784 23069 16867 17186 29199 29199 0.06503797762843533 IVPMDQFPRA 10 Unmodified _IVPMDQFPRA_ 0 0 0 nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.874755859375 3 391.874348 1172.60121 0.56835 0.00022272 0.25113 9.8411E-05 0.81948 0.00032113 391.87454695203456 16.958 0.25694 14.371 14.258 14.515 -2.5866 82 45 2 0 0 0 0.66569 1 8875 8875 3.5871 0.26742 1 7380900 24785 7957 16868 17187 29200 29200 0.0218176100825076 IVPTHYTLL 9 Unmodified _IVPTHYTLL_ 0 0 0 nc|ENSG00000159110|P48551-3|IFNAR2;nc|ENSG00000159110|P48551-2|IFNAR2;ENSG00000159110|ENST00000342136|IFNAR2 nc|ENSG00000159110|P48551-3|IFNAR2 nc|ENSG00000159110|P48551-3|IFNAR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7711791992188 2 528.808042 1055.60153 -0.043529 -2.3018E-05 -0.82534 -0.00043644 -0.86886 -0.00045946 528.8076487498727 65.804 0.28641 65.319 65.124 65.41 -0.48428 25 11 3 0 0 0 0.18118 1 35956 35956 18.135 1.1927 1 3174800 24786 6626 16869 17188 29201 29201 0.07595503999755238 IVQCDRLII 9 Unmodified _IVQCDRLII_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5 REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2103271484375 3 358.21096 1071.61105 -0.070328 -2.5192E-05 -1.355 -0.00048537 -1.4253 -0.00051057 358.21034164488424 38.004 0.60437 38.021 37.731 38.336 0.01704 60 27 3 0 0 0 0.55144 1 20223 20223 2.4985 0.90621 1 3292700 + 24787 19736 16870 17189 29202 29202 0.07810949013628488 IVQCDRLII 9 Unmodified _IVQCDRLII_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5 REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 358.21096 1071.61105 0.1353 4.8467E-05 -0.68495 -0.00024536 -0.54965 -0.00019689 358.21069752720234 38.096 0.20354 38.096 37.925 38.129 0 0.037846 0.00024644 NaN 2.4985 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2144800 + 24788 19736 16870 17189 0.07810949013628488 IVQEDHPIMS 10 Unmodified _IVQEDHPIMS_ 0 0 0 nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF nc|ENSG00000162923|Q9H7D7-2|WDR26 nc|ENSG00000162923|Q9H7D7-2|WDR26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7853393554688 2 584.786981 1167.55941 0.14594 8.5347E-05 -2.8569 -0.0016707 -2.7109 -0.0015853 584.7855260854433 55.064 0.16167 54.586 54.509 54.671 -0.47798 13 7 2 0 0 0 0.53722 1 29871 29871 14.405 2.1647 1 1111500 24789 6929 16871 17190 29203 29203 -0.017668394709517088 IVQGELAM 8 Unmodified _IVQGELAM_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 860.4523315429688 1 860.454616 859.447339 -0.14911 -0.0001283 -2.7631 -0.0023775 -2.9122 -0.0025058 860.4525471244883 93.082 0.20635 92.625 92.522 92.728 -0.4574 13 10 2 0 0 0 0.42423 1 50876 50876 42.095 1.646 1 356870 + 24790 29683 16872 17191 29204 29204 0.011993512427238784 IVRKLVTAL 9 Unmodified _IVRKLVTAL_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8477172851562 2 506.847502 1011.68045 0.12643 6.4082E-05 0.401 0.00020324 0.52743 0.00026733 506.8477401910963 37.83 0.2327 37.847 37.71 37.942 0.01704 24 10 3 0 0 0 0.025842 1 20104 20104 57.722 21.216 1 3187500 24791 8645 16873 17192 29205 29205 0.17507776024683608 IVRKLVTAL 9 Unmodified _IVRKLVTAL_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.72412109375 2 506.847502 1011.68045 0.87529 0.00044364 -0.068932 -3.4938E-05 0.80636 0.0004087 506.8474950049108 42.832 0.31108 38.148 37.994 38.305 -4.6846 35 19 2 0 0 0 0.21367 1 25844 25844 2.0598 1.659 1 16968000 24792 8645 16873 17192 29206 29206 0.17507776024683608 IVRNFHYL 8 Unmodified _IVRNFHYL_ 0 0 0 ENSG00000172724|ENST00000311925|CCL19 ENSG00000172724|ENST00000311925|CCL19 ENSG00000172724|ENST00000311925|CCL19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.7931518554688 2 531.298176 1060.5818 0.64193 0.00034106 1.16 0.00061633 1.802 0.00095739 531.2978302352161 68.167 0.7836 61.991 61.707 62.49 -6.1757 66 46 2 0 0 0 8.7369 1 44824 44824 36.466 2.2788 1 104830000 24793 8245 16874 17193 29207 29207 0.05393172779645283 IVRRRRRPRQL 11 Unmodified _IVRRRRRPRQL_ 0 0 0 ENST00000367510.7_1_1:185014628-185056725:+|nuORF ENST00000367510.7_1_1:185014628-185056725:+|nuORF ENST00000367510.7_1_1:185014628-185056725:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 753.4887084960938 2 753.489834 1504.96511 NaN NaN NaN NaN NaN NaN NaN 85.363 1 79.188 78.688 79.688 -6.1757 0 0 0 0.94165 1 56216 56216 1.3295 0.9789 1 24794 12237 16875 17194 29208 29208 0.23283014281628311 IVRVFIRTEHY 11 Unmodified _IVRVFIRTEHY_ 0 0 0 REV__ENSG00000119285|ENST00000366582|HEATR1 REV__ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.6077575683594 3 478.273499 1431.79867 0.85451 0.00040869 -1.3303 -0.00063626 -0.47582 -0.00022757 478.60733527204985 49.553 0.19855 49.161 49.04 49.238 -0.3923 12 9 2 0 0 0 0.72981 1 26673 26673 1.4551 0.12547 1 2297700 + 24795 19186 16876 17195 29209 29209 0.10004103542564735 IVSAGNYWMII 11 Unmodified _IVSAGNYWMII_ 0 0 0 ENST00000549098.5_1_12:120637179-120638589:-|nuORF ENST00000549098.5_1_12:120637179-120638589:-|nuORF ENST00000549098.5_1_12:120637179-120638589:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2246704101562 3 422.889886 1265.64783 1.2216 0.00051662 -0.32287 -0.00013654 0.89877 0.00038008 422.88980422458076 21.928 0.21288 19.193 19.122 19.335 -2.7348 17 12 2 0 0 0 0.66428 1 11775 11775 3.8459 1.2147 1 990520 24796 15145 16877 17196 29210 29210 0.025632008395405137 IVSATGVTPNI 11 Unmodified _IVSATGVTPNI_ 0 0 0 ENST00000531301.1_1_11:106697120-106698287:-|nuORF ENST00000531301.1_1_11:106697120-106698287:-|nuORF ENST00000531301.1_1_11:106697120-106698287:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 536.308837890625 2 536.305864 1070.59717 NaN NaN NaN NaN NaN NaN NaN 49.755 1 44.216 43.716 44.716 -5.5391 0 0 0 0.64135 1 31120 31120 19.257 1.1106 1 24797 14903 16878 17197 29211 29211 0.06469994786175448 IVSGYVIIVF 10 Unmodified _IVSGYVIIVF_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3345947265625 2 555.333893 1108.65323 0.35494 0.00019711 1.6251 0.00090246 1.98 0.0010996 555.3348029116898 99.792 0.20357 93.617 93.46 93.664 -6.1757 24 13 3 0 0 0 0.35903 1 66585 66585 24.021 6.9077 1 111360000 + 24798 21687 16879 17198 29212 29212 0.10325247693663187 IVSHKGRI 8 Unmodified _IVSHKGRI_ 0 0 0 REV__ENSG00000009954|ENST00000339594|BAZ1B REV__ENSG00000009954|ENST00000339594|BAZ1B MSMS AL20221201_MKP_PDAC_01 4 455.2879943847656 2 455.285069 908.555585 NaN NaN NaN NaN NaN NaN NaN 78.57 1 72.395 71.895 72.895 -6.1757 0 0 0 0.95201 1 51440 51440 10.183 3.8293 1 + 24799 17039 16880 17199 29213 29213 0.0976490360818616 IVSKDGEMVI 10 Unmodified _IVSKDGEMVI_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7939453125 2 545.794275 1089.574 0.24048 0.00013125 -0.85414 -0.00046618 -0.61366 -0.00033493 545.7939047236977 76.45 0.27318 76.45 76.315 76.589 0 22 10 3 0 0 0 0.65502 1 42516 42516 7.9102 0 1 707520 + 24800 21041 16881 17200 29214 29214 0.0327923267720962 IVSQIAVAY 9 Unmodified _IVSQIAVAY_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5527954101562 1 963.550959 962.543683 -0.67296 -0.00064843 0.21151 0.0002038 -0.46145 -0.00044463 963.5515186028115 56.102 0.19654 55.617 55.493 55.689 -0.48554 15 9 2 0 0 0 0.039985 1 30423 30423 49.933 3.912 1 3646400 24801 1638 16882 17201 29215 29215 0.060912420743079565 IVSQIAVAY 9 Unmodified _IVSQIAVAY_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2789611816406 2 482.279118 962.543683 -0.45752 -0.00022065 -0.74111 -0.00035742 -1.1986 -0.00057808 482.27882552768 56.11 0.2772 55.624 55.451 55.728 -0.48554 32 13 3 0 0 0 0.10734 1 30515 30515 32.305 3.8186 1 14725000 24802 1638 16882 17201 29216 29216 0.060912420743079565 IVSQIAVAY 9 Unmodified _IVSQIAVAY_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2785034179688 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 55.82 1 55.751 55.251 56.251 -0.068737 0 0 0 0.29524 1 30343 30343 25.399 6.1423 1 24803 1638 16882 17201 29217 29217 0.060912420743079565 IVSQYRDV 8 Unmodified _IVSQYRDV_ 0 0 0 REV__ENSG00000180772|ENST00000371906|AGTR2 REV__ENSG00000180772|ENST00000371906|AGTR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2643432617188 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 37.927 1 37.655 37.155 38.155 -0.27133 0 0 0 0.9706 1 19950 19950 6.3541 0 1 + 24804 23167 16883 17202 29218 29218 0.023328834091330464 IVSVYITCF 9 Unmodified _IVSVYITCF_ 0 0 0 ENSG00000180269|ENST00000570682|GPR139 ENSG00000180269|ENST00000570682|GPR139 ENSG00000180269|ENST00000570682|GPR139 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.77685546875 2 522.775354 1043.53615 -0.15198 -7.9454E-05 -3.1945 -0.00167 -3.3465 -0.0017495 522.7736463376821 35.036 0.38124 35.036 34.827 35.209 0 52 19 4 0 0 0 0.12841 1 18564 18564 30.225 1.738 1 18213000 24805 8892 16884 17203 29219 29219 0.016127664823898158 IVTEQDFNF 9 Unmodified _IVTEQDFNF_ 0 0 0 REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7662963867188 2 556.766571 1111.51859 0.44338 0.00024686 -0.95404 -0.00053118 -0.51066 -0.00028432 556.7661244007347 76.186 0.27269 76.186 76.043 76.315 0 21 11 2 0 0 0 0.18465 1 42322 42322 24.674 7.7316 1 2180600 + 24806 24530 16885 17204 29220 29220 -0.03270857518896264 IVTEQDFNF 9 Unmodified _IVTEQDFNF_ 0 0 0 REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7660522460938 2 556.766571 1111.51859 0.14696 8.1824E-05 -0.83941 -0.00046735 -0.69244 -0.00038553 556.7658632761622 76.66 0.27822 76.181 76.044 76.322 -0.47945 34 16 3 0 0 0 0.28047 1 41981 41981 18.135 1.1927 1 2217000 + 24807 24530 16885 17204 29221 29221 -0.03270857518896264 IVTEQDFNF 9 Unmodified _IVTEQDFNF_ 0 0 0 REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF REV__ENST00000508984.1_1_4:65297852-65297975:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.766571 1111.51859 0.44338 0.00024686 -0.95404 -0.00053118 -0.51066 -0.00028432 556.7661244007347 76.186 0.27269 76.186 76.043 76.315 0 0.0023439 -5.506E-05 NaN 24.674 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2180600 + 24808 24530 16885 17204 -0.03270857518896264 IVTRSHGQHQL 11 Unmodified _IVTRSHGQHQL_ 0 0 0 REV__ENSG00000153975|ENST00000368576|ZUP1 REV__ENSG00000153975|ENST00000368576|ZUP1 MSMS AL20221201_MKP_PDAC_01 4 638.8021850585938 2 638.34946 1274.68437 NaN NaN NaN NaN NaN NaN NaN 99.563 1 93.387 92.887 93.887 -6.1757 0 0 0 0.79635 1 66345 66345 12.241 0 1 + 24809 21199 16886 17205 29222 29222 0.05801213780478065 IVTSVLLLY 9 Unmodified _IVTSVLLLY_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000502786.1_1_4:141580724-141580856:-|nuORF;ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000197226|ENST00000355235|TBC1D9B;ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8208312988281 2 510.820618 1019.62668 2.3768 0.0012141 -1.599 -0.0008168 0.7778 0.00039732 510.8195935926535 94.999 0.42854 95.013 94.874 95.302 0.014252 33 15 3 0 0 0 0.019979 1 52807 52807 63.563 9.9873 1 2056800 24810 9930;2647 16887 17206 29223 29223 0.11765558802335363 IVTVECEGRS 10 Unmodified _IVTVECEGRS_ 0 0 0 chr11:72686191-72686879|47|12.38|0.21|5.88|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|5 chr11:72686191-72686879|47|12.38|0.21|5.88|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|5 chr11:72686191-72686879|47|12.38|0.21|5.88|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2796630859375 2 546.771331 1091.52811 0.4288 0.00023445 0.28808 0.00015752 0.71688 0.00039197 546.7731334004246 72.118 0.38368 71.642 71.389 71.772 -0.47609 20 15 2 0 0 0 0.23566 1 39481 39481 7.2892 0 1 769440 24811 72 16888 17207 29224 29224 -0.013994125050203365 IVVDNVPQV 9 Unmodified _IVVDNVPQV_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7825012207031 2 491.782025 981.549496 0.45704 0.00022476 -1.1177 -0.00054967 -0.66067 -0.00032491 491.78144138023833 53.549 0.22521 53.549 53.42 53.645 0 21 10 3 0 0 0 0.070838 1 29689 29689 39.957 10.876 1 3025200 24812 2409 16889 17208 29225 29225 0.05798340585988626 IVVDYLVLL 9 Unmodified _IVVDYLVLL_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8299560546875 2 523.828443 1045.64233 0.73736 0.00038625 -1.9102 -0.0010006 -1.1728 -0.00061434 523.8284388812964 101.84 0.19075 95.666 95.606 95.797 -6.1757 13 9 2 0 0 0 0.052168 1 68373 68373 44.407 0 1 10889000 24813 7924 16890 17209 29226 29226 0.1213384531936299 IVVTDPLVY 9 Unmodified _IVVTDPLVY_ 0 0 0 ENSG00000146385|ENST00000275200|TAAR8 ENSG00000146385|ENST00000275200|TAAR8 ENSG00000146385|ENST00000275200|TAAR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2520446777344 2 509.794601 1017.57465 0.26427 0.00013473 -0.81762 -0.00041682 -0.55334 -0.00028209 509.7940846829191 85.215 0.34634 84.713 84.505 84.852 -0.5015 45 18 3 0 0 0 0.48152 1 46544 46544 8.5933 0 1 5691700 24814 5774 16891 17210 29227 29227 0.06656395388563396 IVVVAGNKLR 10 Unmodified _IVVVAGNKLR_ 0 0 0 ENSG00000134571|ENST00000545968|MYBPC3;nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000086967|ENST00000357701|MYBPC2 ENSG00000134571|ENST00000545968|MYBPC3 ENSG00000134571|ENST00000545968|MYBPC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2278137207031 3 356.901114 1067.68151 0.046812 1.6707E-05 -0.6052 -0.000216 -0.55839 -0.00019929 357.2349651957035 21.692 0.17079 21.705 21.634 21.805 0.013796 14 11 2 0 0 0 0.23946 1 11147 11147 3.5871 2.3937 1 2261800 24815 4620 16892 17211 29228 29228 0.15037990393580003 IVVVASMVVLC 11 Unmodified _IVVVASMVVLC_ 0 0 0 nc|ENSG00000053918|P51787-2|KCNQ1;ENSG00000053918|ENST00000155840|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 nc|ENSG00000053918|P51787-2|KCNQ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5331115722656 3 378.220468 1131.63957 NaN NaN NaN NaN NaN NaN NaN 20.229 1 20.257 19.757 20.757 0.028357 0 0 0 0.94144 1 10232 10232 0.50596 0 1 24816 751 16893 17212 29229 29229 0.07901930598563922 IVWMPQNY 8 Unmodified _IVWMPQNY_ 0 0 0 REV__ENSG00000215529|ENST00000400522|EFCAB8 REV__ENSG00000215529|ENST00000400522|EFCAB8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7576904296875 2 525.757495 1049.50044 NaN NaN NaN NaN NaN NaN NaN 71.604 1 71.604 71.104 72.104 0 0 0 0 0.97444 1 39882 39882 2.8892 0 1 + 24817 24343 16894 17213 29230 29230 -0.022332709746024193 IVWPCLLLV 9 Unmodified _IVWPCLLLV_ 0 0 0 REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5 REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5 MSMS AL20221201_MKP_PDAC_01 4 528.3206787109375 2 528.319731 1054.62491 NaN NaN NaN NaN NaN NaN NaN 31.505 1 27.809 27.309 28.309 -3.6958 0 0 0 0.70111 1 17848 17848 9.3474 1.4373 1 + 24818 20792 16895 17214 29231 29231 0.09978226512725996 IVWWCPMSRL 10 Unmodified _IVWWCPMSRL_ 0 0 0 TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8882141113281 3 430.887711 1289.6413 NaN NaN NaN NaN NaN NaN NaN 53.806 1 53.74 53.24 54.24 -0.066936 0 0 0 0.98914 1 29205 29205 0.77653 0.14971 1 24819 30196 16896 17215 29232 29232 0.008069844071769694 IVYFVALI 8 Unmodified _IVYFVALI_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.2924194335938 2 469.291497 936.568441 1.2989 0.00060957 2.4553 0.0011522 3.7542 0.0017618 469.29215180899496 50.099 0.32424 50.05 49.886 50.21 -0.048824 34 15 3 0 0 0 0.76859 1 27067 27067 11.114 0 1 2631000 24820 1864 16897 17216 29233 29233 0.09761921947722385 IWDETPLYF 9 Unmodified _IWDETPLYF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1183.572265625 1 1183.567 1182.55973 -0.42433 -0.00050223 1.5871 0.0018784 1.1628 0.0013762 1183.569085663584 91.415 0.27915 91.415 91.271 91.55 0 32 17 2 0 0 0 0.28047 1 50500 50500 18.135 13.379 1 1238700 24821 8942 16898 17217 29234 29234 -0.024250964794418906 IWDETPLYF 9 Unmodified _IWDETPLYF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.28662109375 2 592.28714 1182.55973 0.45868 0.00027167 -0.90539 -0.00053625 -0.44671 -0.00026458 592.2864908360812 91.938 0.82333 91.457 91.189 92.012 -0.48092 178 44 6 0 0 0 0.023164 4 50239 50140;50239;50335;50431 60.39 46.882 1 197700000 24822 8942 16898 17217 29235;29236;29237;29238 29236 -0.024250964794418906 IWDETPLYF 9 Unmodified _IWDETPLYF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.2875366210938 2 592.28714 1182.55973 0.84415 0.00049998 0.11804 6.9912E-05 0.96219 0.00056989 592.2870647852568 91.316 0.58564 91.353 91.112 91.698 0.036499 77 21 5 0 0 0 0.013472 3 50817 50717;50817;50939 70.716 57.208 1 91342000 24823 8942 16898 17217 29239;29240;29241 29240 -0.024250964794418906 IWDETPLYF 9 Unmodified _IWDETPLYF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2860107421875 2 592.28714 1182.55973 0.091047 5.3926E-05 -0.14041 -8.316E-05 -0.049358 -2.9234E-05 592.286951824293 99.834 0.51959 93.658 93.525 94.044 -6.1757 94 35 5 0 0 0 0.013472 2 66536 66536;66714 70.716 54.566 1 4139399999.9999995 24824 8942 16898 17217 29242;29243 29242 -0.024250964794418906 IWDETPLYF 9 Unmodified _IWDETPLYF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1183.567 1182.55973 1.3442 0.0015909 3.9945 0.0047278 5.3387 0.0063187 1183.5722200270932 91.355 0.3675 91.391 91.139 91.506 0.036499 -0.011934 0.0022397 NaN 18.135 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 12651000 24825 8942 16898 17217 -0.024250964794418906 IWDKIKNLF 9 Unmodified _IWDKIKNLF_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8977661132812 3 392.89737 1175.67028 0.37904 0.00014892 0.72142 0.00028344 1.1005 0.00043237 392.89765323926025 68.332 0.21758 68.358 68.261 68.479 0.025146 23 10 3 0 0 0 0.25681 1 37542 37542 18.373 11.271 1 3084600 24826 16072 16899 17218 29244 29244 0.08947168299459918 IWDKIKNLF 9 Unmodified _IWDKIKNLF_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MSMS AL20221201_MKP_PDAC_01 4 392.8979797363281 3 392.89737 1175.67028 NaN NaN NaN NaN NaN NaN NaN 94.962 1 88.786 88.286 89.286 -6.1757 0 0 0 0.13831 1 62898 62898 35.612 14.075 1 24827 16072 16899 17218 29245 29245 0.08947168299459918 IWDKIKNLF 9 Unmodified _IWDKIKNLF_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MSMS AL20221201_MKP_PDAC_01 4 588.84375 2 588.842416 1175.67028 NaN NaN NaN NaN NaN NaN NaN 95.017 1 88.841 88.341 89.341 -6.1757 0 0 0 0.0098005 1 62937 62937 93.166 17.405 1 24828 16072 16899 17218 29246 29246 0.08947168299459918 IWDLSITRL 9 Unmodified _IWDLSITRL_ 0 0 0 ENST00000333055.8_1_5:180235916-180242536:-|nuORF ENST00000333055.8_1_5:180235916-180242536:-|nuORF ENST00000333055.8_1_5:180235916-180242536:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8258056640625 2 558.824224 1115.63389 1.6259 0.00090861 0.43044 0.00024054 2.0564 0.0011492 558.8247554395716 81.315 0.66436 81.375 81.064 81.729 0.059929 71 25 4 0 0 0 0.011291 2 45004 44902;45004 76.825 34.985 1 36982000 24829 11876 16900 17219 29247;29248 29248 0.08070291402736984 IWDLSITRL 9 Unmodified _IWDLSITRL_ 0 0 0 ENST00000333055.8_1_5:180235916-180242536:-|nuORF ENST00000333055.8_1_5:180235916-180242536:-|nuORF ENST00000333055.8_1_5:180235916-180242536:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8246459960938 2 558.824224 1115.63389 1.3665 0.00076363 -0.32005 -0.00017885 1.0465 0.00058478 558.8241238810394 97.074 0.3395 90.898 90.741 91.08 -6.1757 63 19 4 0 0 0 0.024189 1 64316 64316 59.368 17.529 1 180210000 24830 11876 16900 17219 29249 29249 0.08070291402736984 IWDSPTKQL 9 Unmodified _IWDSPTKQL_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5;ENST00000496689.1_1_13:37569562-37569700:-|nuORF ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.291748046875 2 544.292756 1086.57096 0.18866 0.00010269 -0.39716 -0.00021617 -0.2085 -0.00011349 544.2923093237572 92.017 0.22827 91.536 91.447 91.675 -0.48092 20 12 2 0 0 0 0.48152 1 50299 50299 8.5933 0.68312 1 557490 24831 3532 16901 17220 29250 29250 0.031137256147076187 IWDSPTKQL 9 Unmodified _IWDSPTKQL_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5;ENST00000496689.1_1_13:37569562-37569700:-|nuORF ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.292756 1086.57096 0.18866 0.00010269 -0.39716 -0.00021617 -0.2085 -0.00011349 544.2923093237572 92.017 0.22827 91.536 91.447 91.675 -0.48092 0 0 NaN 8.5933 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 557490 24832 3532 16901 17220 0.031137256147076187 IWDVMGNEEL 10 Unmodified _IWDVMGNEEL_ 0 0 0 nc|ENSG00000100614|P35813-2|PPM1A;ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A nc|ENSG00000100614|P35813-2|PPM1A nc|ENSG00000100614|P35813-2|PPM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2819213867188 2 603.278989 1204.54342 0.41629 0.00025114 -1.3513 -0.00081519 -0.93497 -0.00056405 603.2781054413483 91.928 0.47177 91.447 91.225 91.697 -0.48093 86 27 4 0 0 0 0.68209 1 50372 50372 4.897 0.56777 1 12813000 24833 1855 16902 17221 29251 29251 -0.05066545707836667 IWDVMGNEEL 10 Unmodified _IWDVMGNEEL_ 0 0 0 nc|ENSG00000100614|P35813-2|PPM1A;ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A nc|ENSG00000100614|P35813-2|PPM1A nc|ENSG00000100614|P35813-2|PPM1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2772827148438 2 603.278989 1204.54342 -0.26489 -0.00015981 -1.6799 -0.0010135 -1.9448 -0.0011733 603.278206004198 99.83 0.19756 93.654 93.558 93.755 -6.1757 34 14 3 0 0 0 0.42143 1 66576 66576 20.415 3.328 1 122910000 24834 1855 16902 17221 29252 29252 -0.05066545707836667 IWDVSVNSV 9 Unmodified _IWDVSVNSV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7649230957031 2 509.763832 1017.51311 -0.10011 -5.1031E-05 0.067582 3.4451E-05 -0.032525 -1.658E-05 509.76385628673785 66.308 0.31853 65.824 65.686 66.005 -0.48323 39 17 3 0 0 0 0.070838 2 36167 36167;36276 39.957 15.937 1 11244000 24835 1052 16903 17222 29253;29254 29253 0.005054636892964481 IWDVSVNSV 9 Unmodified _IWDVSVNSV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7658081054688 2 509.763832 1017.51311 0.66436 0.00033867 1.1066 0.0005641 1.7709 0.00090276 509.76448887153146 73.269 0.49298 67.093 66.855 67.348 -6.1757 54 23 3 0 0 0 0.06187 1 47830 47830 42.095 18.946 1 69523000 24836 1052 16903 17222 29255 29255 0.005054636892964481 IWDVSVNSV 9 Unmodified _IWDVSVNSV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.763832 1017.51311 0.32977 0.00016811 0.32643 0.0001664 0.6562 0.00033451 509.7639511504772 65.769 0.22086 65.769 65.624 65.845 0 -0.027829 0.00021775 NaN 39.957 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1115700 24837 1052 16903 17222 0.005054636892964481 IWDYHVVLL 9 Unmodified _IWDYHVVLL_ 0 0 0 nc|ENSG00000156795|Q96HA8-2|NTAQ1;ENST00000523551.1_1_8:124429070-124460295:+|nuORF;ENSG00000156795|ENST00000287387|NTAQ1 nc|ENSG00000156795|Q96HA8-2|NTAQ1 nc|ENSG00000156795|Q96HA8-2|NTAQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3211669921875 2 579.321317 1156.62808 0.54067 0.00031322 -0.68166 -0.0003949 -0.14099 -8.1676E-05 579.320867180133 76.012 0.33974 76.06 75.864 76.204 0.047943 38 14 3 0 0 0 0.43463 1 41876 41876 10.824 2.2306 1 15225000 24838 6479 16904 17223 29256 29256 0.05603192891089748 IWDYTQDACI 10 Unmodified _IWDYTQDACI_ 0 0 0 ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17 ENSG00000150627|ENST00000508596|WDR17 ENSG00000150627|ENST00000508596|WDR17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2684936523438 2 614.271164 1226.52777 NaN NaN NaN NaN NaN NaN NaN 91.979 1 91.499 90.999 91.999 -0.48092 0 0 0 0.98914 1 50279 50279 1.8442 0.19162 1 24839 6062 16905 17224 29257 29257 -0.07642832224883023 IWEDQGPYPT 10 Unmodified _IWEDQGPYPT_ 0 0 0 REV__ENST00000532402.5_1_11:62392602-62392905:-|nuORF REV__ENST00000532402.5_1_11:62392602-62392905:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.2778930664062 2 603.277303 1204.54005 0.87415 0.00052735 0.92089 0.00055555 1.795 0.0010829 603.2778302499321 91.328 0.31361 91.364 91.193 91.506 0.036499 21 11 2 0 0 0 0.38092 1 50798 50798 22.736 3.4793 1 5858500 + 24840 28461 16906 17225 29258 29258 -0.05403472490183958 IWEQHTVTL 9 Unmodified _IWEQHTVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000473741.1_1_15:30092827-30248455:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.798095703125 2 563.798206 1125.58186 1.0399 0.00058627 -0.76744 -0.00043268 0.27242 0.00015359 563.7978085450545 50.508 0.30563 50.095 49.931 50.236 -0.41351 34 14 3 0 0 0 0.0089732 1 27160 27160 86.332 36.399 1 17088000 24841 2175 16907 17226 29259 29259 0.024091279889944417 IWEQHTVTL 9 Unmodified _IWEQHTVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000473741.1_1_15:30092827-30248455:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.79931640625 2 563.798206 1125.58186 1.7958 0.0010125 0.3715 0.00020945 2.1673 0.0012219 563.7988094381365 50.122 0.30296 50.073 49.927 50.23 -0.048828 26 14 3 0 0 0 0.012668 1 27106 27106 72.968 36.841 1 2142200 24842 2175 16907 17226 29260 29260 0.024091279889944417 IWEQHTVTL 9 Unmodified _IWEQHTVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000473741.1_1_15:30092827-30248455:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.79931640625 2 563.798206 1125.58186 0.83852 0.00047276 0.44605 0.00025148 1.2846 0.00072424 563.7985623017153 56.365 0.46021 50.388 50.172 50.632 -5.9769 64 26 4 0 0 0 0.0094097 2 36024 35891;36024 82.529 34.985 1 85737000 24843 2175 16907 17226 29261;29262 29262 0.024091279889944417 IWEQHTVTL 9 Unmodified _IWEQHTVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000473741.1_1_15:30092827-30248455:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.798206 1125.58186 0.30184 0.00017018 -0.15269 -8.6088E-05 0.14915 8.4089E-05 563.798066718009 50.347 0.10699 50.347 50.282 50.389 0 0.12107 -3.6858E-05 NaN 86.332 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1053200 24844 2175 16907 17226 0.024091279889944417 IWFNNRHKERL 11 Unmodified _IWFNNRHKERL_ 0 0 0 REV__ENST00000473601.1_1_7:64021436-64021496:-|nuORF REV__ENST00000473601.1_1_7:64021436-64021496:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.9466552734375 3 504.944265 1511.81096 NaN NaN NaN NaN NaN NaN NaN 66.925 1 60.75 60.25 61.25 -6.1757 0 0 0 0.93648 1 43563 43563 5.0475 1.9753 1 + 24845 27545 16908 17227 29263 29263 0.07553140005620662 IWFVAVVFL 9 Unmodified _IWFVAVVFL_ 0 0 0 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.326904296875 2 547.325871 1092.63719 0.053406 2.923E-05 0.907 0.00049643 0.96041 0.00052566 547.3261584172452 53.271 0.38031 53.207 52.981 53.361 -0.063423 41 18 3 0 0 0 0.46577 1 28951 28951 9.3474 0 1 4332000 + 24846 29686 16909 17228 29264 29264 0.09457586247413019 IWHDNMQF 8 Unmodified _IWHDNMQF_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8018188476562 2 545.742376 1089.4702 3.2645 0.0017816 1.4687 0.00080154 4.7332 0.0025831 545.7427299116681 99.635 0.083435 99.599 99.529 99.613 -0.036301 4 2 2 0 0 0 0.80044 1 55329 55329 6.3541 1.1234 1 839760 24847 3126 16910 17229 29265 29265 -0.07095629639798062 IWHDRAWSI 9 Unmodified _IWHDRAWSI_ 0 0 0 REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3047485351562 2 592.30399 1182.59343 -0.3448 -0.00020423 2.336 0.0013836 1.9912 0.0011794 592.3051788396614 36.442 0.21948 36.464 36.295 36.515 0.021545 12 9 2 0 0 0 0.47846 1 19283 19283 2.0598 0 1 2745500 + 24848 25739 16911 17230 29266 29266 0.009433698029852167 IWHHTFYNELR 11 Unmodified _IWHHTFYNELR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.9216918945312 3 505.921237 1514.74188 -0.12823 -6.4875E-05 0.87649 0.00044344 0.74826 0.00037856 505.9215300904091 36.608 0.10438 36.63 36.58 36.684 0.021545 9 4 3 0 0 0 0.69918 1 19420 19420 4.3317 3.002 1 3050000 24849 1163;13679;9641;9849;5538 16912 17231 29267 29267 0.005100559860466092 IWHHTFYNELR 11 Unmodified _IWHHTFYNELR_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 505.921237 1514.74188 -0.70583 -0.0003571 0.82971 0.00041977 0.12387 6.267E-05 505.92171622688295 36.909 0.21926 36.659 36.554 36.773 -0.2497 0.014663 -2.6072E-05 NaN 4.3317 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2035000 24850 1163;13679;9641;9849;5538 16912 17231 0.005100559860466092 IWIESVIEKF 10 Unmodified _IWIESVIEKF_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.353515625 2 632.352814 1262.69108 2.1156 0.0013378 -0.18906 -0.00011955 1.9265 0.0012182 632.3527191186179 95.047 0.2439 95.051 94.914 95.158 0.004158 19 8 3 0 0 0 0.060668 1 52803 52803 71.708 50.837 1 3522500 24851 4133 16913 17232 29268 29268 0.07023713888474958 IWIESVIEKF 10 Unmodified _IWIESVIEKF_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MSMS AL20221201_MKP_PDAC_01 4 632.3533325195312 2 632.352814 1262.69108 NaN NaN NaN NaN NaN NaN NaN 99.968 1 93.792 93.292 94.292 -6.1757 0 0 0 0.028775 1 66743 66743 80.676 56.655 1 24852 4133 16913 17232 29269 29269 0.07023713888474958 IWISKLPHF 9 Unmodified _IWISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8903503417969 3 380.890327 1139.64915 0.37091 0.00014128 0.021996 8.378E-06 0.39291 0.00014965 380.8903032839515 67.373 0.52774 67.391 67.082 67.609 0.018028 100 26 5 0 0 0 0.031062 3 36865 36865;36970;37074 57.722 48.977 1 222860000 24853 9762 16914 17233 29270;29271;29272 29270 0.0849120299058086 IWISKLPHF 9 Unmodified _IWISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8329467773438 2 570.831852 1139.64915 0.3943 0.00022508 0.86302 0.00049264 1.2573 0.00071772 570.8322460907008 67.333 0.37076 67.351 67.143 67.514 0.018028 42 18 3 0 0 0 0.039985 2 36918 36918;37021 49.933 35.351 1 16505000 24854 9762 16914 17233 29273;29274 29273 0.0849120299058086 IWISKLPHF 9 Unmodified _IWISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8910827636719 3 380.890327 1139.64915 1.0353 0.00039433 0.1155 4.3992E-05 1.1508 0.00043832 380.89031803937445 92.802 0.72462 86.626 86.131 86.855 -6.1757 182 44 5 0 0 0 0.047196 4 61090 61090;61211;61333;61463 45.7 41.956 1 1108000000 24855 9762 16914 17233 29275;29276;29277;29278 29275 0.0849120299058086 IWISKLPHF 9 Unmodified _IWISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8320922851562 2 570.831852 1139.64915 0.68909 0.00039335 0.11695 6.676E-05 0.80604 0.00046011 570.8319063620055 92.797 0.60421 86.621 86.202 86.806 -6.1757 120 37 4 0 0 0 0.009483 2 61444 61316;61444 81.89 67.309 1 232930000 24856 9762 16914 17233 29279;29280 29280 0.0849120299058086 IWKLDSKIH 9 Unmodified _IWKLDSKIH_ 0 0 0 ENSG00000103671|ENST00000261884|TRIP4;ENST00000559777.1_1_15:64736888-64747260:+|nuORF ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5579528808594 3 380.557236 1138.64988 0.49368 0.00018787 1.3005 0.0004949 1.7941 0.00068277 380.55768819950373 63.406 0.51171 63.384 63.029 63.541 -0.021614 67 25 4 0 0 0 0.54816 1 34558 34558 4.5289 0.94181 1 14111000 24857 2159 16915 17234 29281 29281 0.08609997639655376 IWKSEKHDIE 10 Unmodified _IWKSEKHDIE_ 0 0 0 REV__ENSG00000038210|ENST00000264864|PI4K2B REV__ENSG00000038210|ENST00000264864|PI4K2B MSMS AL20221201_MKP_PDAC_01 4 428.8917846679688 3 428.890944 1283.651 NaN NaN NaN NaN NaN NaN NaN 106.05 1 99.875 99.375 100.38 -6.1757 0 0 0 0.9997 1 71011 71011 0.69767 0 1 + 24858 17175 16916 17235 29282 29282 0.020521672179029338 IWLEERPLY 9 Unmodified _IWLEERPLY_ 0 0 0 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8306884765625 2 609.829506 1217.64446 0.62088 0.00037863 0.3761 0.00022936 0.99699 0.00060799 609.8297104181182 82.651 0.27663 82.154 82.03 82.306 -0.49751 18 11 2 0 0 0 0.46577 1 45263 45263 9.3474 1.4373 1 686500 + 24859 22016 16917 17236 29283 29283 0.04434274057211951 IWLEERPLY 9 Unmodified _IWLEERPLY_ 0 0 0 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8310546875 2 609.829506 1217.64446 1.0154 0.00061923 0.47806 0.00029154 1.4935 0.00091076 609.8297877412347 70.579 0.33922 70.615 70.424 70.763 0.035515 30 15 3 0 0 0 0.32871 1 38846 38846 15.847 3.6065 1 3109500 + 24860 22016 16917 17236 29284 29284 0.04434274057211951 IWLEERPLY 9 Unmodified _IWLEERPLY_ 0 0 0 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8312377929688 2 609.829506 1217.64446 1.1291 0.00068857 -0.58589 -0.00035729 0.54323 0.00033128 609.8291449471324 96.402 0.3123 90.227 90.025 90.337 -6.1757 29 18 2 0 0 0 0.2143 1 63814 63814 21.747 6.4982 1 12861000 + 24861 22016 16917 17236 29285 29285 0.04434274057211951 IWLEERPLY 9 Unmodified _IWLEERPLY_ 0 0 0 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 609.7858276367188 2 609.829506 1217.64446 1.1291 0.00068857 -0.58589 -0.00035729 0.54323 0.00033128 609.8291449471324 96.402 0.3123 90.227 90.025 90.337 -6.1757 29 18 2 0 0 0 0.17275 1 63904 63904 21.747 0.20967 1 12861000 + 24862 22016 16917 17236 29286 29286 0.04434274057211951 IWLFKHRRARF 11 Unmodified _IWLFKHRRARF_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.6359252929688 3 510.636995 1528.88916 -0.32291 -0.00016489 -2.6339 -0.001345 -2.9568 -0.0015099 510.6354453981091 101.67 0.17548 101.62 101.49 101.67 -0.045853 14 5 4 0 0 0 0.74429 1 56488 56488 0.094841 0.094841 1 10089000 24863 10123 16918 17237 29287 29287 0.14586617381473843 IWLHIHYLFFR 11 Unmodified _IWLHIHYLFFR_ 0 0 0 REV__ENSG00000007541|ENST00000321878|PIGQ REV__ENSG00000007541|ENST00000321878|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.6228637695312 3 515.622351 1543.84522 -0.62439 -0.00032195 -0.010381 -5.3526E-06 -0.63478 -0.0003273 515.6225868164679 14.611 0.054243 14.58 14.551 14.605 -0.030868 15 9 2 0 0 0 0.7453 1 7120 7120 0 0 1 433040 + 24864 17013 16919 17238 29288 29288 0.09505588164461187 IWLLCWVTL 9 Unmodified _IWLLCWVTL_ 0 0 0 nc|ENSG00000277880|A0A087X0K7|TRBV17 nc|ENSG00000277880|A0A087X0K7|TRBV17 nc|ENSG00000277880|A0A087X0K7|TRBV17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2788696289062 2 573.822638 1145.63072 0.66468 0.00038141 1.0202 0.00058539 1.6848 0.0009668 573.8235102657059 84.48 0.29498 83.981 83.841 84.136 -0.49961 23 13 2 0 0 0 0.203 1 46226 46226 9.3474 0 1 608910 24865 16610 16920 17239 29289 29289 0.06373325024378573 IWLLWGLVF 9 Unmodified _IWLLWGLVF_ 0 0 0 nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000273079|ENST00000609686|GRIN2B nc|ENSG00000183454|Q12879-2|GRIN2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5603942871094 3 382.895189 1145.66374 -0.42792 -0.00016385 -0.11628 -4.4521E-05 -0.5442 -0.00020837 382.89493826782683 36.544 0.12652 36.295 36.232 36.358 -0.2497 7 5 2 0 0 0 0.21798 1 19174 19174 1.1933 0.12188 1 1245900 24866 9151;10892 16921 17240 29290 29290 0.0967327513874352 IWLNTRLDYKE 11 Unmodified _IWLNTRLDYKE_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 725.8871459960938 2 725.888084 1449.76161 0.73304 0.0005321 -0.47517 -0.00034492 0.25787 0.00018718 725.8876292045671 64.928 0.48258 64.928 64.697 65.18 7.6294E-06 45 23 2 0 0 0 0.58245 1 35606 35606 7.1017 0 1 6177500 + 24867 21023 16922 17241 29291 29291 0.054723872061231305 IWLPFPVLL 9 Unmodified _IWLPFPVLL_ 0 0 0 nc|ENSG00000117500|Q9Y3A6-2|TMED5;ENSG00000117500|ENST00000370282|TMED5 nc|ENSG00000117500|Q9Y3A6-2|TMED5 nc|ENSG00000117500|Q9Y3A6-2|TMED5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3421020507812 2 549.341521 1096.66849 1.4716 0.00080843 -0.74033 -0.00040669 0.7313 0.00040173 549.3412166001298 103.06 0.062775 96.884 96.849 96.911 -6.1757 35 16 3 0 0 0 0.0081202 1 69118 69118 93.763 37.714 1 17034000 24868 3311 16923 17242 29292 29292 0.12402159281509739 IWLYIYRKWHR 11 Unmodified _IWLYIYRKWHR_ 0 0 0 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 MSMS AL20221201_MKP_PDAC_01 4 817.461181640625 2 817.459345 1632.90414 NaN NaN NaN NaN NaN NaN NaN 51.267 1 45.618 45.118 46.118 -5.649 0 0 0 0.9428 1 32247 32247 1.4819 1.4819 1 + 24869 29539 16924 17243 29293 29293 0.11300064458805537 IWMGSFFAPSL 11 Unmodified _IWMGSFFAPSL_ 0 0 0 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2108764648438 3 419.210849 1254.61072 -0.087155 -3.6536E-05 0.91279 0.00038265 0.82563 0.00034611 419.54553970028877 32.249 0.15719 32.12 32.042 32.199 -0.12915 8 5 2 0 0 0 0.71036 1 16789 16789 1.3296 0 1 1525200 24870 7288 16925 17244 29294 29294 -0.006404707062301895 IWMTGYEDY 9 Unmodified _IWMTGYEDY_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2464599609375 2 589.247157 1176.47976 NaN NaN NaN NaN NaN NaN NaN 84.746 1 84.746 84.246 85.246 0 0 0 0 0.85798 1 46976 46976 0.52476 0 1 24871 10083 16926 17245 29295 29295 -0.10141906144940549 IWMWCVPHL 9 Carbamidomethyl (C) _IWMWC(Carbamidomethyl (C))VPHL_ IWMWC(1)VPHL IWMWC(56)VPHL 0 1 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.3030395507812 2 621.301547 1240.58854 0.36147 0.00022458 1.892 0.0011755 2.2535 0.0014001 621.3024068287706 99.605 0.1492 93.43 93.341 93.49 -6.1757 21 9 4 0 0 0 0.028712 1 66401 66401 56.048 40.201 1 40059000 24872 6889 16927 17246 29296 29296 677 -0.022129736556280477 IWPEKSFCL 9 Carbamidomethyl (C) _IWPEKSFC(Carbamidomethyl (C))L_ IWPEKSFC(1)L IWPEKSFC(89)L 0 1 0 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2972412109375 2 590.296985 1178.57942 0.40025 0.00023626 1.134 0.00066938 1.5342 0.00090565 590.2976177259249 77.287 1.599 71.111 70.299 71.898 -6.1757 174 89 3 0 0 0 0.008678 4 50681 50326;50681;50810;50940 88.904 60.417 1 39356000 24873 16205 16928 17247 29297;29298;29299;29300 29298 1021 -0.0027304374032155465 IWPEKSFCLVL 11 Carbamidomethyl (C) _IWPEKSFC(Carbamidomethyl (C))LVL_ IWPEKSFC(1)LVL IWPEKSFC(51)LVL 0 1 0 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 696.3711547851562 2 696.373223 1390.73189 -0.43934 -0.00030595 0.091649 6.3822E-05 -0.3477 -0.00024213 696.3733463747556 98.853 0.20203 92.677 92.576 92.778 -6.1757 51 15 4 0 0 0 0.047603 1 65592 65592 51.415 24.532 1 478130000 24874 16205 16929 17248 29301 29301 1021 0.05215731936436896 IWPGGVLPKF 10 Unmodified _IWPGGVLPKF_ 0 0 0 ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF;ENSG00000120451|ENST00000265909|SNX19 ENST00000580193.1_1_18:14630000-14630792:-|nuORF ENST00000580193.1_1_18:14630000-14630792:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3271484375 2 557.326402 1112.63825 1.3405 0.00074708 0.40239 0.00022426 1.7429 0.00097135 557.326630290896 96.286 0.65752 90.11 89.833 90.491 -6.1757 74 39 2 0 0 0 0.13008 4 63641 63641;63762;63891;64017 49.933 42.023 1 59218000 24875 3516 16930 17249 29302;29303;29304;29305 29302 0.0864380061632346 IWPKKGTAVFW 11 Unmodified _IWPKKGTAVFW_ 0 0 0 ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.9199829101562 3 444.920286 1331.73903 1.111 0.00049433 1.1697 0.0005204 2.2807 0.0010147 445.2556483834726 91.071 1.0615 84.895 84.34 85.401 -6.1757 144 61 3 0 0 0 0.63851 6 59879 59879;59994;60009;60126;60152;60406 7.4771 5.3911 1 21916000 24876 1090 16931 17250 29306;29307;29308;29309;29310;29311 29306 0.0864283259916192 IWRRQFSHL 9 Unmodified _IWRRQFSHL_ 0 0 0 REV__nc|ENSG00000288649|Q5JWF8|ACTL10 REV__nc|ENSG00000288649|Q5JWF8|ACTL10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.84375 2 621.846356 1241.67816 NaN NaN NaN NaN NaN NaN NaN 96.592 1 96.592 96.092 97.092 0 0 0 0 0.85798 1 53380 53380 0.52476 0.066424 1 + 24877 30023 16932 17251 29312 29312 0.06698740339606957 IWSDAAALEL 10 Unmodified _IWSDAAALEL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MSMS AL20221201_MKP_PDAC_01 4 544.7847290039062 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 88.135 1 81.96 81.46 82.46 -6.1757 0 0 0 0.38764 1 58134 58134 46.021 15.796 1 24878 1608 16933 17252 29313 29313 0.014700193778026005 IWTWGFKQL 9 Unmodified _IWTWGFKQL_ 0 0 0 REV__ENSG00000173662|ENST00000333172|TAS1R1;REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.296142578125 2 589.821484 1177.62842 0.25787 0.0001521 3.1899 0.0018815 3.4478 0.0020336 589.8238220332984 66.842 0.12373 66.359 66.294 66.418 -0.48323 9 5 2 0 0 0 0.19613 1 36513 36513 12.532 0 1 531280 + 24879 22742;29790 16934 17253 29314 29314 0.0467061261094841 IWTWKILL 8 Unmodified _IWTWKILL_ 0 0 0 ENST00000366919.6_1_6:161537898-161538120:+|nuORF ENST00000366919.6_1_6:161537898-161538120:+|nuORF ENST00000366919.6_1_6:161537898-161538120:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2226257324219 3 358.223306 1071.64809 -0.28521 -0.00010217 -1.0778 -0.0003861 -1.363 -0.00048827 358.22291290754544 31.998 0.43219 32.028 31.887 32.319 0.030107 40 19 3 0 0 0 0.71527 2 16800 16800;16899 12.241 2.8575 1 3961700 24880 12216 16935 17254 29315;29316 29315 0.11512988621711884 IWVRGLYN 8 Unmodified _IWVRGLYN_ 0 0 0 REV__ENST00000264255.7_1_2:99935913-99936123:-|nuORF REV__ENST00000264255.7_1_2:99935913-99936123:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1020.561462402344 1 1020.56253 1019.55525 -0.25721 -0.00026249 0.24925 0.00025437 -0.0079588 -8.1225E-06 1020.5630744420071 78.395 0.35329 78.395 78.222 78.575 0 29 16 2 0 0 0 0.80992 1 43662 43662 0.69038 0 1 1533600 + 24881 25067 16936 17255 29317 29317 0.046254838883328375 IWVRGLYN 8 Unmodified _IWVRGLYN_ 0 0 0 REV__ENST00000264255.7_1_2:99935913-99936123:-|nuORF REV__ENST00000264255.7_1_2:99935913-99936123:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1020.56253 1019.55525 0.10431 0.00010645 -0.79576 -0.00081212 -0.69145 -0.00070567 1020.561354926573 78.846 0.45377 78.36 78.165 78.619 -0.48596 -0.017413 -0.00043496 NaN 0.69038 56 18 4 NaN NaN NaN NaN 0 NaN NaN 0 9225900 + 24882 25067 16936 17255 0.046254838883328375 IWWDNNFK 8 Unmodified _IWWDNNFK_ 0 0 0 REV__nc|ENSG00000165995|Q08289-6|CACNB2 REV__nc|ENSG00000165995|Q08289-6|CACNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8507080078125 3 374.85042 1121.52943 -0.40872 -0.00015321 -0.60184 -0.0002256 -1.0106 -0.00037881 374.85028215032355 24.627 0.22869 24.627 24.51 24.739 0 37 13 4 0 0 0 0.79783 1 12563 12563 5.7319 1.5423 1 4989800 + 24883 22073 16937 17256 29318 29318 -0.026474103539840144 IWWDNNFK 8 Unmodified _IWWDNNFK_ 0 0 0 REV__nc|ENSG00000165995|Q08289-6|CACNB2 REV__nc|ENSG00000165995|Q08289-6|CACNB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.85042 1121.52943 -0.40872 -0.00015321 -0.60184 -0.0002256 -1.0106 -0.00037881 374.85028215032355 24.627 0.22869 24.627 24.51 24.739 0 0 0 NaN 5.7319 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4989800 + 24884 22073 16937 17256 -0.026474103539840144 IWWEPTGHTF 10 Unmodified _IWWEPTGHTF_ 0 0 0 ENSG00000102996|ENST00000219271|MMP15 ENSG00000102996|ENST00000219271|MMP15 ENSG00000102996|ENST00000219271|MMP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8063354492188 2 637.303655 1272.59276 0.95348 0.00060765 1.5697 0.0010004 2.5232 0.001608 637.8061573213936 71.409 0.34679 71.448 71.232 71.579 0.039024 29 15 3 0 0 0 0.40046 1 39294 39294 32.305 25.582 1 1306900 24885 2090 16938 17257 29319 29319 -0.03263469636749505 IWWLNCQSL 9 Unmodified _IWWLNCQSL_ 0 0 0 ENST00000593983.5_1_19:43519347-43523525:-|nuORF;ENST00000595138.1_1_19:43519232-43530599:-|nuORF ENST00000593983.5_1_19:43519347-43523525:-|nuORF ENST00000593983.5_1_19:43519347-43523525:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1970825195312 3 388.19531 1161.5641 NaN NaN NaN NaN NaN NaN NaN 19.857 1 19.857 19.357 20.357 0 0 0 0 0.53226 1 9959 9959 10.151 3.1135 1 24886 15743 16939 17258 29320 29320 -0.010219105375199433 IWWQIPQYLLI 11 Unmodified _IWWQIPQYLLI_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 736.9212036132812 2 736.918655 1471.82276 0.11544 8.5068E-05 3.1518 0.0023226 3.2672 0.0024077 736.920993017526 101 0.10919 100.96 100.9 101 -0.04216 9 3 3 0 0 0 0.71036 1 56132 56132 3.2813 0.28607 1 23421000 24887 2721 16940 17259 29321 29321 0.10571943976242437 IWWYQETIK 9 Unmodified _IWWYQETIK_ 0 0 0 ENST00000518174.5_1_8:29921398-29923541:-|nuORF ENST00000518174.5_1_8:29921398-29923541:-|nuORF ENST00000518174.5_1_8:29921398-29923541:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.8902893066406 3 422.888763 1265.64446 NaN NaN NaN NaN NaN NaN NaN 20.119 1 20.119 19.619 20.619 0 0 0 0 0.85852 1 10107 10107 0.20686 0.066965 1 24888 14687 16941 17260 29322 29322 0.022262740571704853 IWYGTGLTF 9 Unmodified _IWYGTGLTF_ 0 0 0 ENSG00000140284|ENST00000267842|SLC27A2 ENSG00000140284|ENST00000267842|SLC27A2 ENSG00000140284|ENST00000267842|SLC27A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.323486328125 2 529.271293 1056.52803 1.2409 0.00065676 -2.0096 -0.0010636 -0.76869 -0.00040685 529.2704443713598 96.924 0.63985 90.748 90.37 91.01 -6.1757 50 37 2 0 0 0 0.16229 1 64305 64305 24.674 6.5389 1 13754000 24889 5218 16942 17261 29323 29323 0.002029555572789832 IWYHYLLH 8 Unmodified _IWYHYLLH_ 0 0 0 REV__ENSG00000197601|ENST00000354817|FAR1 REV__ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8010864257812 2 572.800552 1143.58655 1.4438 0.00082701 0.85795 0.00049143 2.3018 0.0013184 572.8010847889936 47.441 0.32784 42.207 42.043 42.371 -5.2339 23 18 2 0 0 0 0.5284 1 29448 29448 32.454 1.1853 1 8261200 + 24890 23944 16943 17262 29324 29324 0.02050056922416843 IWYIFMDTF 9 Unmodified _IWYIFMDTF_ 0 0 0 REV__ENSG00000109929|ENST00000264027|SC5D REV__ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.5313415527344 3 412.531699 1234.57327 0.50768 0.00020944 -1.3799 -0.00056926 -0.87224 -0.00035983 412.53133681987606 52.525 0.30713 52.091 51.909 52.216 -0.43367 44 15 4 0 0 0 0.47846 1 28348 28348 8.7454 1.7083 1 12446000 + 24891 18679 16944 17263 29325 29325 -0.03463561971852869 IYAAFKEVL 9 Unmodified _IYAAFKEVL_ 0 0 0 ENSG00000214706|ENST00000417626|IFRD2;ENST00000464258.5_1_3:50325776-50327005:-|nuORF ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.303466796875 2 527.302593 1052.59063 0.2321 0.00012239 1.4436 0.0007612 1.6757 0.00088358 527.3035059913198 63.329 0.46181 62.842 62.665 63.127 -0.48617 47 20 4 0 0 0 0.085319 1 34502 34502 36.506 0.462 1 4751600 24892 10504 16945 17264 29326 29326 0.06644101625465737 IYAAFKEVL 9 Unmodified _IYAAFKEVL_ 0 0 0 ENSG00000214706|ENST00000417626|IFRD2;ENST00000464258.5_1_3:50325776-50327005:-|nuORF ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3025512695312 2 527.302593 1052.59063 0.28871 0.00015224 0.49407 0.00026053 0.78279 0.00041277 527.302920216281 62.894 0.31413 62.872 62.735 63.049 -0.021614 31 15 3 0 0 0 0.085319 1 34393 34393 36.506 3.7205 1 7277500 24893 10504 16945 17264 29327 29327 0.06644101625465737 IYAAPFIIRS 10 Unmodified _IYAAPFIIRS_ 0 0 0 REV__nc|ENSG00000146276|P24046-3|GABRR1 REV__nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2259826660156 3 384.225486 1149.65463 0.30204 0.00011605 1.1064 0.00042512 1.4085 0.00054118 384.2259415777359 59.033 0.27422 58.542 58.391 58.665 -0.49079 30 12 3 0 0 0 0.68371 1 32104 32104 4.7159 0.83959 1 4168500 + 24894 20823 16946 17265 29328 29328 0.08578881782409553 IYAAPFIIRS 10 Unmodified _IYAAPFIIRS_ 0 0 0 REV__nc|ENSG00000146276|P24046-3|GABRR1 REV__nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2256774902344 3 384.225486 1149.65463 0.53148 0.00020421 0.33786 0.00012981 0.86933 0.00033402 384.2255423789096 58.6 0.56944 58.539 58.373 58.943 -0.060719 78 28 5 0 0 0 0.6891 1 31877 31877 4.1166 1.3814 1 99783000 + 24895 20823 16946 17265 29329 29329 0.08578881782409553 IYAAPFIIRS 10 Unmodified _IYAAPFIIRS_ 0 0 0 REV__nc|ENSG00000146276|P24046-3|GABRR1 REV__nc|ENSG00000146276|P24046-3|GABRR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8785705566406 3 384.225486 1149.65463 0.53148 0.00020421 0.33786 0.00012981 0.86933 0.00033402 384.2255423789096 58.6 0.56944 58.539 58.373 58.943 -0.060719 78 28 5 0 0 0 0.23786 1 31911 31911 6.6235 2.7471 1 99783000 + 24896 20823 16946 17265 29330 29330 0.08578881782409553 IYAAPFIIRS 10 Unmodified _IYAAPFIIRS_ 0 0 0 REV__nc|ENSG00000146276|P24046-3|GABRR1 REV__nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2258911132812 3 384.225486 1149.65463 1.4938 0.00057396 0.45663 0.00017545 1.9504 0.00074941 384.22569774151094 87.06 0.74961 80.884 80.528 81.277 -6.1757 111 40 4 0 0 0 0.5543 1 57241 57241 13.519 3.7544 1 85024000 + 24897 20823 16946 17265 29331 29331 0.08578881782409553 IYAAPFIIRS 10 Unmodified _IYAAPFIIRS_ 0 0 0 REV__nc|ENSG00000146276|P24046-3|GABRR1 REV__nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 384.225486 1149.65463 0.30204 0.00011605 1.1064 0.00042512 1.4085 0.00054118 384.2259415777359 59.033 0.27422 58.542 58.391 58.665 -0.49079 0.0015651 0.00045069 NaN 4.7159 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4168500 + 24898 20823 16946 17265 0.08578881782409553 IYAAVTPEL 9 Unmodified _IYAAVTPEL_ 0 0 0 ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.5350341796875 1 976.534975 975.527698 0.11832 0.00011555 0.29881 0.00029179 0.41713 0.00040734 976.5355241276832 63.051 0.25118 63.051 62.87 63.122 0 18 10 2 0 0 0 0.12841 1 35119 35119 30.225 10.786 1 1155300 24899 7832 16947 17266 29332 29332 0.038955358374209936 IYAAVTPEL 9 Unmodified _IYAAVTPEL_ 0 0 0 ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7715759277344 2 488.771126 975.527698 0.20408 9.975E-05 -0.39221 -0.0001917 -0.18813 -9.1952E-05 488.77128362830877 63.003 0.34728 63.003 62.774 63.122 0 22 14 2 0 0 0 0.027803 1 35147 35147 56.541 8.1954 1 1077100 24900 7832 16947 17266 29333 29333 0.038955358374209936 IYAAVTPEL 9 Unmodified _IYAAVTPEL_ 0 0 0 ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.5340576171875 1 976.534975 975.527698 0.20715 0.00020229 -0.17094 -0.00016693 0.036203 3.5354E-05 976.534966792623 63.546 0.20063 63.06 62.948 63.149 -0.48617 14 8 2 0 0 0 0.03327 1 34628 34628 53.576 11.481 1 978220 24901 7832 16947 17266 29334 29334 0.038955358374209936 IYAAVTPEL 9 Unmodified _IYAAVTPEL_ 0 0 0 ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX ENSG00000169084|ENST00000334651|DHRSX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7711791992188 2 488.771126 975.527698 0.45256 0.0002212 -0.11607 -5.6734E-05 0.33649 0.00016446 488.7711746986477 63.524 0.26539 63.038 62.905 63.171 -0.48617 17 11 2 0 0 0 0.027803 1 34648 34648 56.541 28.054 1 928640 24902 7832 16947 17266 29335 29335 0.038955358374209936 IYACPRAWF 9 Unmodified _IYACPRAWF_ 0 0 0 ENST00000423427.1_2_3:173114104-173322101:+|nuORF ENST00000423427.1_2_3:173114104-173322101:+|nuORF ENST00000423427.1_2_3:173114104-173322101:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.77587890625 2 563.778762 1125.54297 0.99474 0.00056081 -2.2226 -0.001253 -1.2278 -0.00069222 563.7770708490231 90.41 0.21606 84.234 84.091 84.307 -6.1757 15 12 2 0 0 0 0.25297 1 59723 59723 19.439 2.3261 1 8675400 24903 13131 16948 17267 29336 29336 -0.014778758463990016 IYADLNQNDF 10 Unmodified _IYADLNQNDF_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7807006835938 2 606.78021 1211.54587 0.9955 0.00060405 -0.85531 -0.00051898 0.14019 8.5066E-05 606.7793483789292 64.556 0.53448 58.381 58.15 58.684 -6.1757 65 29 3 0 0 0 0.20771 2 41773 41773;41913 45.7 34.205 1 25781000 24904 885 16949 17268 29337;29338 29337 -0.0514437397855545 IYADNQVMHF 10 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ IYADNQVM(1)HF IYADNQVM(65)HF 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2842407226562 2 627.284605 1252.55466 0.17151 0.00010758 -0.59702 -0.0003745 -0.42551 -0.00026692 627.284384874689 37.531 0.42117 37.531 37.259 37.68 0 71 22 5 0 0 0 0.035736 1 19973 19973 65.235 49.987 1 61150000 24905 8655 16950 17269 29339 29339 1464 -0.061517236137206055 IYADNQVMHF 10 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ IYADNQVM(1)HF IYADNQVM(75)HF 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2855224609375 2 627.284605 1252.55466 -0.1554 -9.7483E-05 -0.27706 -0.00017379 -0.43246 -0.00027128 627.2846314912058 37.902 0.29759 37.631 37.485 37.782 -0.27133 45 14 4 0 0 0 0.020813 1 19896 19896 74.929 57.816 1 26784000 24906 8655 16950 17269 29340 29340 1464 -0.061517236137206055 IYADNQVMHF 10 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ IYADNQVM(1)HF IYADNQVM(85)HF 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.2852172851562 2 627.284605 1252.55466 0.60353 0.00037859 -0.29962 -0.00018795 0.30391 0.00019064 627.2844684910186 42.974 0.45795 38.29 38.041 38.499 -4.6846 95 28 4 0 0 0 0.01132 2 25896 25896;26033 85.272 62.536 1 110840000 24907 8655 16950 17269 29341;29342 29341 1464 -0.061517236137206055 IYADNQVMHF 10 Oxidation (M) _IYADNQVM(Oxidation (M))HF_ IYADNQVM(1)HF IYADNQVM(75)HF 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20221201_MKP_PDAC_01 4 627.2862548828125 2 627.284605 1252.55466 NaN NaN NaN NaN NaN NaN NaN 43.157 1 38.393 37.893 38.893 -4.7648 0 0 0 0.016955 1 26177 26177 74.929 52.193 1 24908 8655 16950 17269 29343 29343 1464 -0.061517236137206055 IYADNQVMHF 10 Unmodified _IYADNQVMHF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7567749023438 2 619.287148 1236.55974 0.50589 0.00031329 -1.5047 -0.00093182 -0.99877 -0.00061853 619.2863916169212 52.868 0.23176 52.868 52.75 52.982 0 24 10 3 0 0 0 0.21193 1 29252 29252 27.629 16.805 1 2642900 24909 8655 16950 17270 29344 29344 -0.04907419751089037 IYADNQVMHF 10 Unmodified _IYADNQVMHF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.288818359375 2 619.287148 1236.55974 0.47886 0.00029655 0.51637 0.00031978 0.99523 0.00061633 619.2877116580739 53.434 0.28448 52.982 52.803 53.087 -0.45173 40 13 4 0 0 0 0.085354 1 28862 28862 49.933 32.82 1 7542900 24910 8655 16950 17270 29345 29345 -0.04907419751089037 IYADNQVMHF 10 Unmodified _IYADNQVMHF_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2886962890625 2 619.287148 1236.55974 0.7657 0.00047419 0.1803 0.00011166 0.946 0.00058585 619.2870424084516 59.381 0.50649 53.266 53.008 53.515 -6.1147 87 27 4 0 0 0 6.3408E-07 3 38269 38005;38135;38269 133.7 89.844 1 190200000 24911 8655 16950 17270 29346;29347;29348 29348 -0.04907419751089037 IYADPAAYVM 10 Oxidation (M) _IYADPAAYVM(Oxidation (M))_ IYADPAAYVM(1) IYADPAAYVM(67) 0 0 1 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2644653320312 2 565.26535 1128.51615 -0.16902 -9.5539E-05 -0.63449 -0.00035865 -0.8035 -0.00045419 565.2651552950367 56.116 0.31434 56.116 55.969 56.284 0 34 14 3 0 0 0 0.031389 1 31163 31163 67.344 49.209 1 9924500 24912 5560 16951 17271 29349 29349 1021 -0.0429702924823232 IYADPAAYVM 10 Oxidation (M) _IYADPAAYVM(Oxidation (M))_ IYADPAAYVM(1) IYADPAAYVM(64) 0 0 1 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.264892578125 2 565.26535 1128.51615 0.079372 4.4866E-05 0.20308 0.00011479 0.28245 0.00015966 565.2655377679957 56.893 0.40993 56.407 56.153 56.563 -0.48554 60 19 4 0 0 0 0.037795 2 30819 30819;30922 64.236 42.49 1 18958000 24913 5560 16951 17271 29350;29351 29350 1021 -0.0429702924823232 IYADPAAYVM 10 Unmodified _IYADPAAYVM_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2686157226562 2 557.267893 1112.52123 1.389 0.00077407 -2.5092 -0.0013983 -1.1202 -0.00062423 557.2667731748144 79.417 1.3218 73.241 72.5 73.822 -6.1757 206 77 4 0 0 0 0.16524 2 52406 52261;52406 37.974 17.52 1 113940000 24914 5560 16951 17272 29352;29353 29353 -0.03052725385600752 IYADYIAPLF 10 Unmodified _IYADYIAPLF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3134765625 2 593.313158 1184.61176 1.2855 0.00076269 -3.2232 -0.0019124 -1.9377 -0.0011497 593.3122208492547 100.83 0.16103 94.653 94.556 94.717 -6.1757 23 10 3 0 0 0 0.095786 1 67511 67511 67.344 40.46 1 78260000 24915 1381 16952 17273 29354 29354 0.026840669343073387 IYAEIPDETL 10 Unmodified _IYAEIPDETL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7372436523438 2 582.295162 1162.57577 0.10309 6.0031E-05 0.084538 4.9226E-05 0.18763 0.00010926 582.2952525011331 65.068 0.25066 65.068 64.919 65.169 0 20 11 2 0 0 0 0.22811 1 36249 36249 14.838 4.0143 1 968950 24916 3552 16953 17274 29355 29355 0.0009856496683369187 IYAGEKAQF 9 Unmodified _IYAGEKAQF_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7660522460938 2 513.766374 1025.5182 -0.92598 -0.00047574 -0.10085 -5.1814E-05 -1.0268 -0.00052755 513.7663119735046 32.697 0.2309 32.697 32.58 32.811 0 25 11 3 0 0 0 0.07916 1 17079 17079 37.974 9.4872 1 5638300 24917 4031 16954 17275 29356 29356 0.006457675518731776 IYAGEKAQF 9 Unmodified _IYAGEKAQF_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7661743164062 2 513.766374 1025.5182 1.0815 0.00055564 -0.24255 -0.00012461 0.83896 0.00043103 513.766391729822 37.091 0.35594 32.808 32.599 32.955 -4.2835 33 21 2 0 0 0 0.032796 1 21714 21714 53.833 0.25722 1 11669000 24918 4031 16954 17275 29357 29357 0.006457675518731776 IYAGGIKSI 9 Unmodified _IYAGGIKSI_ 0 0 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 nc|ENSG00000124067|Q9UP95-3|SLC12A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.7748107910156 2 461.273835 920.533118 -0.38517 -0.00017767 0.3194 0.00014733 -0.065775 -3.034E-05 461.27422290518126 41.9 0.2496 41.593 41.433 41.682 -0.30682 18 11 2 0 0 0 0.047714 1 22230 22230 45.74 1.8816 1 6704000 24919 3744 16955 17276 29358 29358 0.06967259419900529 IYAGLSHELL 10 Unmodified _IYAGLSHELL_ 0 0 0 REV__PDXDC1|p.G95E|1|0.03|ENSG00000179889|chr16:15004228-15004228|G/A|missense_variant REV__PDXDC1|p.G95E|1|0.03|ENSG00000179889|chr16:15004228-15004228|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3089599609375 2 558.308406 1114.60226 0.84253 0.00047039 2.3564 0.0013156 3.1989 0.001786 558.3084689460328 68.051 0.24741 67.569 67.411 67.659 -0.48218 18 11 2 0 0 0 0.35903 1 37159 37159 24.021 1.2843 1 2215900 + 24920 30071 16956 17277 29359 29359 0.04954298648817712 IYAGLSHELL 10 Unmodified _IYAGLSHELL_ 0 0 0 REV__PDXDC1|p.G95E|1|0.03|ENSG00000179889|chr16:15004228-15004228|G/A|missense_variant REV__PDXDC1|p.G95E|1|0.03|ENSG00000179889|chr16:15004228-15004228|G/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.308406 1114.60226 0.84253 0.00047039 2.3564 0.0013156 3.1989 0.001786 558.3084689460328 68.051 0.24741 67.569 67.411 67.659 -0.48218 0 0 NaN 24.021 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2215900 + 24921 30071 16956 17277 0.04954298648817712 IYAHITKHY 9 Unmodified _IYAHITKHY_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5413818359375 3 382.541586 1144.60293 -0.49263 -0.00018845 -0.40923 -0.00015655 -0.90186 -0.000345 382.54133320204033 19.373 0.22792 19.396 19.33 19.558 0.023106 40 22 3 0 0 0 0.45045 1 9756 9756 14.405 6.4952 1 1325300 24922 7262 16957 17278 29360 29360 0.03641138088505613 IYAHITKHY 9 Unmodified _IYAHITKHY_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5423583984375 3 382.541586 1144.60293 1.4994 0.00057356 -1.1907 -0.0004555 0.30864 0.00011807 382.5411032428666 21.779 0.5094 19.044 18.844 19.354 -2.7348 81 28 4 0 0 0 0.078314 2 11634 11634;11738 29.437 15.822 1 22548000 24923 7262 16957 17278 29361;29362 29361 0.03641138088505613 IYAHITKHY 9 Unmodified _IYAHITKHY_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.541586 1144.60293 0.068488 2.62E-05 0.20859 7.9793E-05 0.27707 0.00010599 382.5415853523118 19.518 0.1436 19.525 19.466 19.61 0.0078506 0.064761 0.00037968 NaN 14.405 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1071600 24924 7262 16957 17278 0.03641138088505613 IYAHLFDFI 9 Unmodified _IYAHLFDFI_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENST00000560809.5_1_15:52548900-52557395:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2987670898438 2 569.800217 1137.58588 1.7008 0.00096914 -0.5154 -0.00029367 1.1854 0.00067547 569.7999484037847 92.79 0.36397 92.82 92.625 92.989 0.030197 31 14 3 0 0 0 0.040472 1 51575 51575 49.669 19.444 1 4325500 24925 4094 16958 17279 29363 29363 0.022592174826968403 IYAIVKEKY 9 Unmodified _IYAIVKEKY_ 0 0 0 ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL ENST00000473576.6_1_13:50235206-50237234:-|nuORF ENST00000473576.6_1_13:50235206-50237234:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5559997558594 3 376.221742 1125.6434 -0.32933 -0.0001239 1.0071 0.0003789 0.6778 0.000255 376.2220670129832 35.012 0.24746 34.789 34.669 34.917 -0.2224 34 10 4 0 0 0 0.073961 1 18304 18304 39.213 23.474 1 9970600 24926 3688 16959 17280 29364 29364 0.08560059688284127 IYAIVKEKY 9 Unmodified _IYAIVKEKY_ 0 0 0 ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL ENST00000473576.6_1_13:50235206-50237234:-|nuORF ENST00000473576.6_1_13:50235206-50237234:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2217407226562 3 376.221742 1125.6434 0.032378 1.2181E-05 0.11174 4.204E-05 0.14412 5.4221E-05 376.22161521760734 34.755 0.21235 34.782 34.69 34.903 0.027401 21 9 3 0 0 0 0.16019 1 18345 18345 27.088 10.522 1 3694800 24927 3688 16959 17280 29365 29365 0.08560059688284127 IYAIVKEKY 9 Unmodified _IYAIVKEKY_ 0 0 0 ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL ENST00000473576.6_1_13:50235206-50237234:-|nuORF ENST00000473576.6_1_13:50235206-50237234:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2221984863281 3 376.221742 1125.6434 1.2581 0.00047334 0.19021 7.156E-05 1.4483 0.0005449 376.2218177103188 39.001 0.40017 34.551 34.334 34.734 -4.4509 64 25 3 0 0 0 0.01085 2 22998 22998;23129 78.06 49.827 1 58896000 24928 3688 16959 17280 29366;29367 29366 0.08560059688284127 IYAIVKEKY 9 Unmodified _IYAIVKEKY_ 0 0 0 ENST00000473576.6_1_13:50235206-50237234:-|nuORF;nc|ENSG00000123179|Q9BY08-5|EBPL;ENST00000569153.1_1_16:64294558-64295142:-|nuORF;ENSG00000123179|ENST00000242827|EBPL ENST00000473576.6_1_13:50235206-50237234:-|nuORF ENST00000473576.6_1_13:50235206-50237234:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 376.221742 1125.6434 -0.5702 -0.00021452 0.27153 0.00010215 -0.29868 -0.00011237 376.2217644985955 34.868 0.16564 34.868 34.773 34.939 0 0.1202 -0.00013762 NaN 78.06 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2242800 24929 3688 16959 17280 0.08560059688284127 IYAKGKCI 8 Carbamidomethyl (C) _IYAKGKC(Carbamidomethyl (C))I_ IYAKGKC(1)I IYAKGKC(44)I 0 1 0 ENST00000537247.5_1_12:100987446-100987533:+|nuORF ENST00000537247.5_1_12:100987446-100987533:+|nuORF ENST00000537247.5_1_12:100987446-100987533:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.76708984375 2 476.767863 951.521173 1.1871 0.00056595 -4.0941 -0.0019519 -2.907 -0.001386 476.7653423343511 55.477 0.31499 49.556 49.272 49.587 -5.9211 37 19 2 0 0 0 0.40035 1 35177 35177 44.407 6.433 1 85291000 24930 14990 16960 17281 29368 29368 991 0.04347319405064809 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.804931640625 2 554.8055 1107.59645 -0.018413 -1.0216E-05 -0.23123 -0.00012829 -0.24964 -0.0001385 554.8052013452519 55.927 0.30062 55.449 55.279 55.58 -0.47798 47 14 4 0 0 0 0.0090524 1 30333 30333 85.642 45.684 1 47298000 24931 8506 16961 17282 29369 29369 0.04695200137143729 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8046264648438 2 554.8055 1107.59645 0.0063984 3.5499E-06 0.3992 0.00022148 0.4056 0.00022503 554.8055834644282 55.588 0.23071 55.519 55.395 55.626 -0.068737 17 11 2 0 0 0 0.0087873 1 30210 30210 103.35 51.085 1 6365500 24932 8506 16961 17282 29370 29370 0.04695200137143729 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8045654296875 2 554.8055 1107.59645 1.2079 0.00067017 0.20977 0.00011638 1.4177 0.00078655 554.8054637406964 61.629 0.3904 55.453 55.228 55.619 -6.1757 57 19 4 0 0 0 0.014417 2 39634 39634;39765 69.105 17.83 1 176850000 24933 8506 16961 17282 29371;29372 29371 0.04695200137143729 IYAPKLQEF 9 Unmodified _IYAPKLQEF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 554.8055 1107.59645 -0.17272 -9.5828E-05 -0.83437 -0.00046291 -1.0071 -0.00055874 554.8050156762854 55.355 0.24301 55.355 55.218 55.461 0 -0.089384 -0.00071142 NaN 103.35 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2177800 24934 8506 16961 17282 0.04695200137143729 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7840881347656 2 485.784036 969.553519 0.65985 0.00032055 -0.56113 -0.00027259 0.098723 4.7958E-05 485.783693664846 83.034 0.47787 82.536 82.263 82.741 -0.49751 35 19 2 0 0 0 0.0089973 2 45460 45357;45460 86.121 29.061 1 14746000 24935 3562 16962 17283 29373;29374 29374 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 970.5619506835938 1 970.560795 969.553519 0.43634 0.00042349 -0.30211 -0.00029321 0.13423 0.00013028 970.5600162805995 83.024 0.36563 82.527 82.306 82.672 -0.49751 24 14 2 0 0 0 0.03327 2 45401 45401;45506 53.576 22.939 1 1759300 24936 3562 16962 17283 29375;29376 29375 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7844543457031 2 485.784036 969.553519 1.5376 0.00074695 0.77054 0.00037432 2.3082 0.0011213 485.7835901056681 82.315 0.5422 82.377 82.175 82.717 0.062004 73 20 5 0 0 0 0.0081063 2 45488 45488;45601 93.883 41.615 1 58231000 24937 3562 16962 17283 29377;29378 29377 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7843933105469 2 485.784036 969.553519 0.94845 0.00046074 0.099355 4.8265E-05 1.0478 0.00050901 485.78398932338695 90.429 0.86166 84.254 83.808 84.67 -6.1757 96 50 2 0 0 0 0.0094915 4 59620 59490;59620;59754;59890 81.864 38.006 1 237340000 24938 3562 16962 17283 29379;29380;29381;29382 29380 0.06752430079700389 IYAPPLPSL 9 Unmodified _IYAPPLPSL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.5604858398438 1 970.560795 969.553519 0.66191 0.00064242 0.19138 0.00018575 0.85329 0.00082817 970.5607639826604 90.446 0.64255 84.27 83.918 84.56 -6.1757 69 37 2 0 0 0 0.0058506 3 59802 59548;59680;59802 114.94 49.709 1 40639000 24939 3562 16962 17283 29383;29384;29385 29385 0.06752430079700389 IYAPQGLLL 9 Unmodified _IYAPQGLLL_ 0 0 0 ENST00000523128.1_1_8:41363387-41364622:+|nuORF;nc|ENSG00000147533|Q7Z5G4-3|GOLGA7;ENSG00000147533|ENST00000357743|GOLGA7 ENST00000523128.1_1_8:41363387-41364622:+|nuORF ENST00000523128.1_1_8:41363387-41364622:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2979431152344 2 494.29731 986.580068 0.92383 0.00045665 -0.11797 -5.8315E-05 0.80586 0.00039833 494.2974628480354 92.341 0.90364 86.166 85.823 86.726 -6.1757 97 55 3 0 0 0 0.016184 2 61178 61052;61178 67.344 9.8725 1 29991000 24940 5858 16963 17284 29386;29387 29387 0.08624118971056305 IYAQRQLLL 9 Unmodified _IYAQRQLLL_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.33984375 2 559.340041 1116.66553 0.32824 0.0001836 -0.026569 -1.4861E-05 0.30167 0.00016874 559.3399692897218 55.454 0.25881 55.385 55.218 55.477 -0.068737 32 12 3 0 0 0 0.0094097 1 30090 30090 81.613 30.758 1 14697000 24941 676 16964 17285 29388 29388 0.11186284156724469 IYAQRQLLL 9 Unmodified _IYAQRQLLL_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;nc|ENSG00000046651|O75665-2|OFD1;ENST00000490265.5_1_X:13753187-13770868:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3412475585938 2 559.340041 1116.66553 1.3077 0.00073147 0.51848 0.00029001 1.8262 0.0010215 559.340470377489 60.918 0.32714 54.771 54.574 54.901 -6.1478 29 17 2 0 0 0 0.008513 1 39230 39230 125.62 65.235 1 34413000 24942 676 16964 17285 29389 29389 0.11186284156724469 IYAQTLVWI 9 Unmodified _IYAQTLVWI_ 0 0 0 nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8165893554688 2 553.815867 1105.61718 2.3376 0.0012946 0.44832 0.00024829 2.7859 0.0015429 553.8158914091987 95.841 0.35278 95.845 95.624 95.977 0.004158 35 12 4 0 0 0 0.052168 1 53228 53228 44.407 15.92 1 2839900 24943 2150 16965 17286 29390 29390 0.06859790516796238 IYAQTLVWI 9 Unmodified _IYAQTLVWI_ 0 0 0 nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8170776367188 2 553.815867 1105.61718 0.86659 0.00047993 -2.7219 -0.0015074 -1.8553 -0.0010275 553.8164956236244 100.53 0.13411 94.355 94.27 94.404 -6.1757 17 7 3 0 0 0 0.28047 1 67243 67243 18.135 4.2289 1 53513000 24944 2150 16965 17286 29391 29391 0.06859790516796238 IYASQTDQMVF 11 Oxidation (M) _IYASQTDQM(Oxidation (M))VF_ IYASQTDQM(1)VF IYASQTDQM(62)VF 0 0 1 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8043823242188 2 659.802828 1317.5911 0.010254 6.7654E-06 0.17644 0.00011641 0.18669 0.00012318 659.8028136636157 49.099 0.32427 49.099 48.932 49.256 0 39 15 3 0 0 0 0.01584 1 26971 26971 61.602 50.802 1 5810800 24945 5854 16966 17287 29392 29392 1052 -0.05498891507659209 IYASQTDQMVF 11 Oxidation (M) _IYASQTDQM(Oxidation (M))VF_ IYASQTDQM(1)VF IYASQTDQM(60)VF 0 0 1 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MSMS AL20221201_MKP_PDAC_01 4 659.7951049804688 2 659.802828 1317.5911 NaN NaN NaN NaN NaN NaN NaN 56.626 1 50.649 50.149 51.149 -5.9769 0 0 0 0.057868 1 36152 36152 60.074 38.537 1 24946 5854 16966 17287 29393 29393 1052 -0.05498891507659209 IYASQTDQMVF 11 Oxidation (M) _IYASQTDQM(Oxidation (M))VF_ IYASQTDQM(1)VF IYASQTDQM(58)VF 0 0 1 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MSMS AL20221201_MKP_PDAC_01 4 659.8047485351562 2 659.802828 1317.5911 NaN NaN NaN NaN NaN NaN NaN 56.741 1 50.764 50.264 51.264 -5.9769 0 0 0 0.065884 1 36233 36233 57.722 40.609 1 24947 5854 16966 17287 29394 29394 1052 -0.05498891507659209 IYASVRTLL 9 Unmodified _IYASVRTLL_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.3135986328125 2 518.313492 1034.61243 0.32388 0.00016787 -0.28805 -0.0001493 0.035833 1.8573E-05 518.3133949640846 59.594 0.51684 59.541 59.38 59.897 -0.053059 55 25 4 0 0 0 0.044296 2 32436 32436;32549 47.594 9.6204 1 44176000 24948 4180 16967 17288 29395;29396 29395 0.09650906374054102 IYATEAHVF 9 Unmodified _IYATEAHVF_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7655029296875 2 525.766374 1049.5182 NaN NaN NaN NaN NaN NaN NaN 45.785 1 45.785 45.285 46.285 0 0 0 0 0.060495 1 24981 24981 53.576 17.531 1 24949 809 16968 17289 29397 29397 -0.004582324481134492 IYATEAHVF 9 Unmodified _IYATEAHVF_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7667236328125 2 525.766374 1049.5182 0.64532 0.00033929 -0.029054 -1.5276E-05 0.61627 0.00032401 525.7665671226019 51.72 0.67444 46.029 45.562 46.237 -5.6912 77 42 2 0 0 0 0.12841 1 32589 32589 30.225 1.738 1 101180000 24950 809 16968 17289 29398 29398 -0.004582324481134492 IYATRLIQM 9 Oxidation (M) _IYATRLIQM(Oxidation (M))_ IYATRLIQM(1) IYATRLIQM(96) 0 0 1 ENSG00000106628|ENST00000610533|POLD2;ENST00000496539.1_1_7:44157490-44163110:-|nuORF;ENST00000470867.5_1_7:44156819-44163110:-|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF ENSG00000106628|ENST00000610533|POLD2 ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8109130859375 2 562.810259 1123.60597 0.88576 0.00049852 -0.42913 -0.00024152 0.45663 0.000257 562.8101694458161 43.32 0.31674 43.304 43.144 43.461 -0.015667 34 14 3 0 0 0 0.0082548 2 23266 23166;23266 96.367 60.322 1 11319000 24951 2447 16969 17290 29399;29400 29400 421 0.04910645150994242 IYATRLIQM 9 Unmodified _IYATRLIQM_ 0 0 0 ENSG00000106628|ENST00000610533|POLD2;ENST00000496539.1_1_7:44157490-44163110:-|nuORF;ENST00000470867.5_1_7:44156819-44163110:-|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF ENSG00000106628|ENST00000610533|POLD2 ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8128662109375 2 554.812802 1107.61105 0.90552 0.00050239 -0.64713 -0.00035904 0.25839 0.00014336 554.8125841161846 58.11 0.18009 58.044 57.97 58.15 -0.066036 11 8 2 0 0 0 0.021948 1 31658 31658 61.602 25.558 1 3268200 24952 2447 16969 17291 29401 29401 0.0615494901362581 IYAWEESCM 9 Unmodified _IYAWEESCM_ 0 0 0 REV__ENST00000274711.6_1_5:138210224-138210626:-|nuORF REV__ENST00000274711.6_1_5:138210224-138210626:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8209228515625 3 377.821032 1130.44127 NaN NaN NaN NaN NaN NaN NaN 55.676 1 55.676 55.176 56.176 0 0 0 0 0.85737 1 30938 30938 0.26902 0 1 + 24953 25166 16970 17292 29402 29402 -0.11873535051108774 IYAWPFPI 8 Unmodified _IYAWPFPI_ 0 0 0 nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5 nc|ENSG00000186092|Q8NH21|OR4F5 nc|ENSG00000186092|Q8NH21|OR4F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2734985351562 2 503.773471 1005.53239 -0.1066 -5.3703E-05 -2.7739 -0.0013974 -2.8805 -0.0014511 503.7717933625664 57.921 0.22746 57.432 57.35 57.577 -0.48974 15 10 2 0 0 0 0.61999 1 31498 31498 24.21 6.075 1 1445100 24954 8615 16971 17293 29403 29403 0.029844647708500815 IYAWPFPI 8 Unmodified _IYAWPFPI_ 0 0 0 nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5 nc|ENSG00000186092|Q8NH21|OR4F5 nc|ENSG00000186092|Q8NH21|OR4F5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2971801757812 2 503.773471 1005.53239 1.0773 0.00054272 -1.0378 -0.00052283 0.039473 1.9885E-05 503.7718712432132 63.714 0.56719 57.539 57.197 57.765 -6.1757 57 30 3 0 0 0 8.7369 1 41059 41059 17.087 0 1 11767000 24955 8615 16971 17293 29404 29404 0.029844647708500815 IYCDAVPYLF 10 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))DAVPYLF_ IYC(1)DAVPYLF IYC(64)DAVPYLF 0 1 0 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8029174804688 2 630.8021 1259.58965 0.25294 0.00015955 0.17746 0.00011194 0.4304 0.0002715 631.3036305816981 99.716 0.18417 93.541 93.416 93.6 -6.1757 17 11 2 0 0 0 0.037795 1 66462 66462 64.236 35.155 1 35466000 24956 1814 16972 17294 29405 29405 174 -0.029764808057734626 IYCFLHNFL 9 Unmodified _IYCFLHNFL_ 0 0 0 ENST00000520639.1_1_5:153873211-153873349:+|nuORF ENST00000520639.1_1_5:153873211-153873349:+|nuORF ENST00000520639.1_1_5:153873211-153873349:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 585.2929077148438 2 585.294245 1168.57394 NaN NaN NaN NaN NaN NaN NaN 95.264 1 89.089 88.589 89.589 -6.1757 0 0 0 0.27711 1 63098 63098 26.341 1.3503 1 24957 14732 16973 17295 29406 29406 -0.0036072253212751093 IYCHLDHNF 9 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))HLDHNF_ IYC(1)HLDHNF IYC(93)HLDHNF 0 1 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.77197265625 2 609.771665 1217.52878 1.0984 0.0006698 0.083765 5.1077E-05 1.1822 0.00072088 610.2734211946192 37.43 0.23351 33.146 33.023 33.256 -4.2835 21 13 2 0 0 0 0.0082475 1 21968 21968 92.653 40.385 1 6270400 24958 2957 16974 17296 29407 29407 303 -0.07128573065324417 IYCHLDHNFM 10 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))HLDHNFM_ IYC(1)HLDHNFM IYC(69)HLDHNFM 0 1 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.5313415527344 3 450.530364 1348.56926 1.4574 0.0006566 -1.7882 -0.00080563 -0.3308 -0.00014903 450.5300068184656 47.383 0.37044 42.175 42.027 42.397 -5.2072 51 21 3 0 0 0 0.02847 2 29408 29388;29408 68.76 59.784 1 11620000 24959 2957 16975 17297 29408;29409 29409 303 -0.09107974737230506 IYCKPHFNQLF 11 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))KPHFNQLF_ IYC(1)KPHFNQLF IYC(69)KPHFNQLF 0 1 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MSMS AL20221201_MKP_PDAC_01 4 733.864990234375 2 733.866097 1465.71764 NaN NaN NaN NaN NaN NaN NaN 78.975 1 72.799 72.299 73.299 -6.1757 0 0 0 0.028509 1 51730 51730 69.105 38.468 1 24960 723 16976 17298 29410 29410 55 0.0034107950814359356 IYCPAPPQI 9 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))PAPPQI_ IYC(1)PAPPQI IYC(57)PAPPQI 0 1 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;ENST00000465534.5_1_1:207500166-207510288:+|nuORF nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7713012695312 2 529.770603 1057.52665 -0.13391 -7.0941E-05 0.94596 0.00050114 0.81205 0.0004302 529.7714296459343 55.841 0.28682 55.363 55.213 55.5 -0.47798 30 13 3 0 0 0 0.027803 1 30285 30285 56.541 31.867 1 5721600 24961 53 16977 17299 29411 29411 0 0.0001899819685604598 IYCPAPPQI 9 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))PAPPQI_ IYC(1)PAPPQI IYC(89)PAPPQI 0 1 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;ENST00000465534.5_1_1:207500166-207510288:+|nuORF nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.771484375 2 529.770603 1057.52665 0.75518 0.00040007 0.86764 0.00045965 1.6228 0.00085972 529.7710644518949 63.228 0.5471 57.052 56.759 57.306 -6.1757 97 30 4 0 0 0 0.0086179 2 40903 40772;40903 89.427 63.086 1 283620000 24962 53 16977 17299 29412;29413 29413 0 0.0001899819685604598 IYCQICKQL 9 2 Carbamidomethyl (C) _IYC(Carbamidomethyl (C))QIC(Carbamidomethyl (C))KQL_ IYC(1)QIC(1)KQL IYC(150)QIC(150)KQL 0 2 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8088989257812 2 613.307026 1224.5995 0.32715 0.00020064 -0.36236 -0.00022224 -0.035214 -2.1597E-05 613.3070251535559 45.412 0.38729 40.457 40.239 40.626 -4.9549 54 26 3 0 0 0 0.00032477 2 27798 27798;27936 147.83 107.87 1 20609000 24963 7937 16978 17300 29414;29415 29414 774;775 -0.003816160720134576 IYCRRTCY 8 Unmodified _IYCRRTCY_ 0 0 0 ENSG00000180386|ENST00000391354|KRTAP9-7 ENSG00000180386|ENST00000391354|KRTAP9-7 ENSG00000180386|ENST00000391354|KRTAP9-7 MSMS AL20221201_MKP_PDAC_01 4 539.250732421875 2 539.252054 1076.48956 NaN NaN NaN NaN NaN NaN NaN 24.46 1 21.632 21.132 22.132 -2.8273 0 0 0 0.90769 1 13319 13319 18.135 1.0221 1 24964 8898 16979 17301 29416 29416 -0.04562996620529702 IYDAAVLNYM 10 Oxidation (M) _IYDAAVLNYM(Oxidation (M))_ IYDAAVLNYM(1) IYDAAVLNYM(44) 0 0 1 ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7853393554688 2 594.783907 1187.55326 0.55635 0.00033091 -0.79482 -0.00047274 -0.23847 -0.00014184 594.7835386122055 57.423 0.31318 56.934 56.773 57.086 -0.48974 30 14 3 0 0 0 0.11755 1 31187 31187 43.858 25.712 1 4645700 24965 2325;6792;10892 16980 17302 29417 29417 401 -0.03301357702480345 IYDAAVLNYM 10 Unmodified _IYDAAVLNYM_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2880859375 2 586.78645 1171.55835 0.021477 1.2602E-05 -0.17576 -0.00010313 -0.15428 -9.0531E-05 586.7865682517825 85.078 0.48057 78.903 78.657 79.138 -6.1757 61 29 3 0 0 0 0.11755 1 55917 55917 43.858 19.838 1 34897000 24966 2325;6792;10892 16980 17303 29418 29418 -0.020570538398715144 IYDCVSQTEYR 11 Unmodified _IYDCVSQTEYR_ 0 0 0 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 ENSG00000116668|ENST00000367500|SWT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.54443359375 3 459.543215 1375.60782 -0.052132 -2.3957E-05 0.82899 0.00038096 0.77686 0.000357 459.5435161212005 42.494 0.29267 42.187 42.046 42.338 -0.30682 24 14 2 0 0 0 0.67477 1 22567 22567 6.6235 1.5759 1 64077000 24967 3236 16981 17304 29419 29419 -0.06496390621691717 IYDDEIPSL 9 Unmodified _IYDDEIPSL_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7620239257812 2 532.760955 1063.50736 0.50826 0.00027078 2.1925 0.0011681 2.7007 0.0014388 532.7616244522098 67.237 0.3739 67.237 67.04 67.414 0 22 15 2 0 0 0 0.41742 1 37507 37507 11.64 3.7301 1 803030 24968 1366 16982 17305 29420 29420 -0.021856796130578005 IYDDKLELQ 9 Unmodified _IYDDKLELQ_ 0 0 0 REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2903442382812 2 568.795329 1135.5761 0.40635 0.00023113 -0.50816 -0.00028904 -0.10182 -5.7913E-05 568.7957040620224 59.407 0.64101 59.354 59.093 59.734 -0.053062 88 32 5 0 0 0 0.14 1 32256 32256 29.082 8.628 1 107050000 + 24969 17219 16983 17306 29421 29421 0.013739846866428707 IYDDQGHIHL 10 Unmodified _IYDDQGHIHL_ 0 0 0 ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2004699707031 3 404.199889 1209.57784 0.35525 0.00014359 1.1681 0.00047214 1.5233 0.00061573 404.20049775110164 38.586 0.25301 38.586 38.494 38.747 0 19 11 2 0 0 0 0.44373 1 20639 20639 12.175 7.6459 1 2346200 24970 2370 16984 17307 29422 29422 -0.018569615047226762 IYDDTSARRT 10 Unmodified _IYDDTSARRT_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2949829101562 2 599.296559 1196.57856 -0.28945 -0.00017347 0.69213 0.00041479 0.40268 0.00024132 599.2975673329105 51.522 0.25176 51.468 51.306 51.558 -0.053871 28 12 3 0 0 0 0.13391 1 27852 27852 41.84 0 1 6212600 24971 5298 16985 17308 29423 29423 -0.011861668557003213 IYDEAISSF 9 Unmodified _IYDEAISSF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENST00000603621.1_1_6:112405349-112408468:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7495727539062 2 522.747847 1043.48114 0.67632 0.00035354 3.9013 0.0020394 4.5776 0.0023929 522.7489400845915 67.792 0.42608 61.616 61.48 61.906 -6.1757 31 24 2 0 0 0 0.042911 1 44181 44181 48.346 29.089 1 22326000 24972 1138 16986 17309 29424 29424 -0.03885948784522952 IYDEAISSFF 10 Unmodified _IYDEAISSFF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000368657.7_1_6:112400794-112408637:-|nuORF;ENST00000603621.1_1_6:112405349-112408468:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2827758789062 2 596.282054 1190.54956 0.52398 0.00031244 0.12422 7.4071E-05 0.6482 0.00038651 596.2821176826795 89.488 0.30197 88.986 88.8 89.102 -0.50172 25 12 3 0 0 0 0.6606 1 48886 48886 7.2892 2.5332 1 558850 24973 1138 16987 17310 29425 29425 -0.03809704204672926 IYDEDEVLL 9 Unmodified _IYDEDEVLL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7741088867188 2 554.774062 1107.53357 0.63823 0.00035407 -0.27216 -0.00015099 0.36607 0.00020308 554.7738683390287 67.827 0.91614 67.827 67.523 68.439 0 126 44 5 0 0 0 0.038285 2 37806 37806;37906 50.855 14.811 1 42228000 24974 2336 16988 17311 29426;29427 29426 -0.015894104415792754 IYDEDEVLL 9 Unmodified _IYDEDEVLL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7730712890625 2 554.774062 1107.53357 0.71235 0.00039519 -0.12393 -6.8752E-05 0.58842 0.00032644 554.7738846394094 68.302 0.24555 67.821 67.764 68.01 -0.48071 15 10 2 0 0 0 0.39863 1 37348 37348 12.532 3.9383 1 889970 24975 2336 16988 17311 29428 29428 -0.015894104415792754 IYDEDEVLL 9 Unmodified _IYDEDEVLL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7744140625 2 554.774062 1107.53357 0.85818 0.0004761 -0.54085 -0.00030005 0.31733 0.00017605 554.7739781974985 75.95 0.89826 69.775 69.194 70.093 -6.1757 165 48 5 0 0 0 0.038285 3 49534 49414;49534;49662 50.855 20.63 1 56748000 24976 2336 16988 17311 29429;29430;29431 29430 -0.015894104415792754 IYDEDEVLL 9 Unmodified _IYDEDEVLL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1108.955444335938 1 1108.54085 1107.53357 0.6506 0.00072122 0.88146 0.00097713 1.5321 0.0016983 1108.5420712871849 75.896 0.61354 69.721 69.319 69.932 -6.1757 57 32 2 0 0 0 0.023371 1 49497 49497 57.471 11.45 1 12885000 24977 2336 16988 17311 29432 29432 -0.015894104415792754 IYDEFLPV 8 Unmodified _IYDEFLPV_ 0 0 0 ENST00000480996.1_1_9:6805652-6819052:+|nuORF ENST00000480996.1_1_9:6805652-6819052:+|nuORF ENST00000480996.1_1_9:6805652-6819052:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 498.25634765625 2 498.257851 994.501149 NaN NaN NaN NaN NaN NaN NaN 46.468 1 41.387 40.887 41.887 -5.0805 0 0 0 0.85111 1 28707 28707 20.871 1.6142 1 24978 14069 16989 17312 29433 29433 0.0036784694609650614 IYDEQPMHI 9 Unmodified _IYDEQPMHI_ 0 0 0 REV__ENSG00000183273|ENST00000327554|CCDC60 REV__ENSG00000183273|ENST00000327554|CCDC60 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.5488891601562 3 382.514708 1144.5223 0.99004 0.00037871 -0.95756 -0.00036628 0.03249 1.2428E-05 382.51429098595804 44.819 0.35457 39.967 39.834 40.188 -4.852 52 24 3 0 0 0 0.21302 1 27358 27358 5.7319 3.9896 1 16183000 + 24979 23332 16990 17313 29434 29434 -0.04418511016683624 IYDEVVKL 8 Unmodified _IYDEVVKL_ 0 0 0 ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7801208496094 2 489.778951 977.543348 0.57401 0.00028114 1.001 0.00049027 1.575 0.0007714 489.77946029144596 53.398 0.22258 52.946 52.803 53.026 -0.45173 18 10 2 0 0 0 0.40602 1 28884 28884 43.858 20.71 1 2377700 24980 1748 16991 17314 29435 29435 0.053678223544807224 IYDEVVKL 8 Unmodified _IYDEVVKL_ 0 0 0 ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 ENSG00000100075|ENST00000215882|SLC25A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7799377441406 2 489.778951 977.543348 0.8207 0.00040196 0.25069 0.00012278 1.0714 0.00052474 489.7789847181584 59.538 0.25426 53.423 53.318 53.572 -6.1147 20 12 2 0 0 0 0.22971 1 38258 38258 65.235 31.133 1 21256000 24981 1748 16991 17314 29436 29436 0.053678223544807224 IYDFIGVRG 9 Unmodified _IYDFIGVRG_ 0 0 0 ENST00000595180.5_1_19:36036641-36037580:+|nuORF ENST00000595180.5_1_19:36036641-36037580:+|nuORF ENST00000595180.5_1_19:36036641-36037580:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7833251953125 2 520.282192 1038.54983 1.1617 0.00060441 -0.67826 -0.00035288 0.48344 0.00025152 520.2822473588816 58.33 0.92685 52.256 51.924 52.851 -6.0745 180 50 5 0 0 0 0.16226 1 37697 37697 26.884 11.036 1 491740000 24982 15754 16992 17315 29437 29437 0.032097603058673485 IYDFWRMVW 9 Unmodified _IYDFWRMVW_ 0 0 0 ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000173482|P28827|PTPRM;ENST00000577827.5_1_18:8296422-8376613:+|nuORF ENSG00000173482|ENST00000580170|PTPRM ENSG00000173482|ENST00000580170|PTPRM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.3178100585938 2 658.318251 1314.62195 NaN NaN NaN NaN NaN NaN NaN 30.708 1 30.738 30.238 31.238 0.030106 0 0 0 0.85737 1 16064 16064 0.6015 0 1 24983 8330 16993 17316 29438 29438 -0.022776486121074413 IYDGEVHCQL 10 Unmodified _IYDGEVHCQL_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8492736816406 3 392.849979 1175.52811 -0.001124 -4.4156E-07 -0.52633 -0.00020677 -0.52745 -0.00020721 392.84961817887955 32.052 0.14903 31.923 31.866 32.015 -0.12915 8 5 2 0 0 0 0.23981 1 16705 16705 0.77653 0.32202 1 1163900 + 24984 22523 16994 17317 29439 29439 -0.05263412505019005 IYDGEVHCQL 10 Unmodified _IYDGEVHCQL_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.849979 1175.52811 -0.91512 -0.0003595 -1.8162 -0.00071351 -2.7313 -0.001073 392.8492312142272 32.116 0.24036 32.116 31.983 32.223 0 0.096798 -8.1993E-05 NaN 0.77653 33 11 4 NaN NaN NaN NaN 0 NaN NaN 0 12513000 + 24985 22523 16994 17317 -0.05263412505019005 IYDGPIHL 8 Unmodified _IYDGPIHL_ 0 0 0 nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2497863769531 2 464.25036 926.486168 0.61984 0.00028776 -0.013493 -6.264E-06 0.60635 0.0002815 464.25040272641877 54.98 0.31812 54.98 54.83 55.149 0 33 13 3 0 0 0 0.41521 1 30513 30513 42.968 22.097 1 10269000 24986 4663 16995 17318 29440 29440 0.01998399868762135 IYDGPIHL 8 Unmodified _IYDGPIHL_ 0 0 0 nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2513122558594 2 464.25036 926.486168 0.33525 0.00015564 -0.11398 -5.2916E-05 0.22127 0.00010272 464.2502635503186 55.501 0.35118 55.023 54.841 55.192 -0.47798 30 16 2 0 0 0 0.35156 2 30064 30064;30169 49.669 15.482 1 10207000 24987 4663 16995 17318 29441;29442 29441 0.01998399868762135 IYDGPIHL 8 Unmodified _IYDGPIHL_ 0 0 0 nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2506713867188 2 464.25036 926.486168 1.0572 0.00049079 -0.04066 -1.8876E-05 1.0165 0.00047191 464.2503799613514 61.403 0.33987 55.255 55.055 55.395 -6.1478 36 16 3 0 0 0 0.24182 2 39468 39468;39602 63.394 35.221 1 51789000 24988 4663 16995 17318 29443;29444 29443 0.01998399868762135 IYDICRRNL 9 Carbamidomethyl (C) _IYDIC(Carbamidomethyl (C))RRNL_ IYDIC(1)RRNL IYDIC(60)RRNL 0 1 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;ENSG00000183785|ENST00000330423|TUBA8 ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3251342773438 2 611.821689 1221.62883 0.43217 0.00026441 0.3068 0.00018771 0.73897 0.00045212 611.8221125111891 38.466 0.30899 34.097 33.948 34.257 -4.3689 48 19 3 0 0 0 0.023481 2 22635 22635;22770 60.074 32.445 1 31694000 24989 3708;4027;7630;9198 16996 17319 29445;29446 29445 367 0.026876642684783292 IYDIFQKL 8 Unmodified _IYDIFQKL_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.295654296875 2 520.294768 1038.57498 0.2501 0.00013013 2.412 0.001255 2.6621 0.0013851 520.2956911731278 74.423 0.29477 74.469 74.321 74.616 0.045959 19 12 2 0 0 0 0.18875 1 41041 41041 74.423 30.016 1 4150200 24990 6822 16997 17320 29447 29447 0.057238151084447964 IYDIVRNSW 9 Unmodified _IYDIVRNSW_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3038330078125 2 583.303655 1164.59276 1.1523 0.00067216 -1.077 -0.00062821 0.075339 4.3945E-05 583.3029399780831 57.014 0.27425 56.945 56.78 57.054 -0.068737 24 13 2 0 0 0 0.008597 1 30998 30998 107.1 53.267 1 16513000 24991 4072 16998 17321 29448 29448 0.01704530363304002 IYDIVRNSW 9 Unmodified _IYDIVRNSW_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.8269653320312 2 583.303655 1164.59276 0.88945 0.00051882 -2.9667 -0.0017305 -2.0772 -0.0012116 583.3018162112728 63.497 0.46816 57.321 57.075 57.543 -6.1757 58 26 3 0 0 0 0.14565 1 41166 41166 24.991 0.97039 1 25405000 24992 4072 16998 17321 29449 29449 0.01704530363304002 IYDIVRNSW 9 Unmodified _IYDIVRNSW_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.303655 1164.59276 0.42023 0.00024512 -1.0963 -0.00063948 -0.67608 -0.00039436 583.8046381343643 57.38 0.2339 56.89 56.75 56.984 -0.48974 -0.027165 -2.1229E-05 NaN 107.1 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1066900 24993 4072 16998 17321 0.01704530363304002 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8152465820312 2 555.813325 1109.6121 1.0526 0.00058503 -0.038232 -2.125E-05 1.0143 0.00056378 555.8132467106786 65.771 0.36099 65.78 65.592 65.953 0.0095596 52 17 4 0 0 0 0.0081887 2 36014 36014;36119 106.94 59.191 1 32346000 24994 6752 16999 17322 29450;29451 29450 0.061674866541807205 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MSMS AL20221201_MKP_PDAC_01 4 555.8150024414062 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 75.651 1 69.475 68.975 69.975 -6.1757 0 0 0 0.13831 1 49482 49482 38.176 0.20157 1 24995 6752 16999 17322 29452 29452 0.061674866541807205 IYDKFIAQL 9 Unmodified _IYDKFIAQL_ 0 0 0 nc|ENSG00000160783|Q6P1K2-4|PMF1;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 nc|ENSG00000160783|Q6P1K2-4|PMF1 MSMS AL20221201_MKP_PDAC_01 4 555.814208984375 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 76.192 1 70.017 69.517 70.517 -6.1757 0 0 0 0.15549 1 49843 49843 36.127 5.4905 1 24996 6752 16999 17322 29453 29453 0.061674866541807205 IYDKTSVLF 9 Unmodified _IYDKTSVLF_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2974243164062 2 543.297507 1084.58046 -0.76489 -0.00041556 -0.31264 -0.00016986 -1.0775 -0.00058542 543.2971754932913 56.587 0.22016 56.101 56.006 56.226 -0.48554 28 17 2 0 0 0 0.013609 1 30709 30709 70.332 15.558 1 12284000 24997 9430 17000 17323 29454 29454 0.04155493900225338 IYDKTSVLF 9 Unmodified _IYDKTSVLF_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2969360351562 2 543.297507 1084.58046 -0.3313 -0.00017999 -0.11608 -6.3068E-05 -0.44738 -0.00024306 543.2971646382155 56.234 0.22985 56.165 56.019 56.248 -0.068737 15 11 2 0 0 0 0.025842 1 30576 30576 57.722 17.765 1 5749100 24998 9430 17000 17323 29455 29455 0.04155493900225338 IYDKTSVLF 9 Unmodified _IYDKTSVLF_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2981567382812 2 543.297507 1084.58046 1.1302 0.00061402 1.2241 0.00066506 2.3543 0.0012791 543.2981827632666 62.348 0.43827 56.172 55.984 56.422 -6.1757 43 23 2 0 0 0 0.017075 2 40199 40199;40367 66.457 26.499 1 44535000 24999 9430 17000 17323 29456;29457 29456 0.04155493900225338 IYDLATQTL 9 Unmodified _IYDLATQTL_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2791748046875 2 519.279315 1036.54408 0.28016 0.00014548 -0.81932 -0.00042546 -0.53916 -0.00027997 519.2788596809597 62.289 0.44256 62.289 62.044 62.486 0 98 28 5 0 0 0 0.14602 1 34756 34756 28.487 0.85804 1 99554000 25000 4029 17001 17324 29458 29458 0.027266170035318282 IYDLHESTYKQ 11 Unmodified _IYDLHESTYKQ_ 0 0 0 nc|ENSG00000080200|Q68DQ2-1|CRYBG3;ENSG00000080200|ENST00000389622|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 nc|ENSG00000080200|Q68DQ2-1|CRYBG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3438110351562 2 698.840799 1395.66705 0.53929 0.00037688 -0.69907 -0.00048854 -0.15977 -0.00011166 698.8404735709018 72.55 0.18696 72.074 71.98 72.167 -0.47609 14 8 2 0 0 0 0.62338 1 39713 39713 10.151 2.5416 1 691020 25001 1294 17002 17325 29459 29459 -0.014961713358388806 IYDLVDRHL 9 Unmodified _IYDLVDRHL_ 0 0 0 ENSG00000071243|ENST00000315870|ING3 ENSG00000071243|ENST00000315870|ING3 ENSG00000071243|ENST00000315870|ING3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.876708984375 3 381.876746 1142.60841 0.59329 0.00022656 -3.3708 -0.0012872 -2.7775 -0.0010607 381.876357686809 46.626 0.45168 46.289 46.073 46.524 -0.33664 71 22 5 0 0 0 0.044042 1 24937 24937 47.732 16.464 1 23328000 25002 1055 17003 17326 29460 29460 0.0428081688032762 IYDMSTVM 8 Unmodified _IYDMSTVM_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000534765.1_1_11:65835264-65836005:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MSMS AL20221201_MKP_PDAC_01 4 480.2145385742188 2 480.214272 958.41399 NaN NaN NaN NaN NaN NaN NaN 66.657 1 60.482 59.982 60.982 -6.1757 0 0 0 0.85111 1 43364 43364 20.871 6.2895 1 25003 1469 17004 17327 29461 29461 -0.06688018591466971 IYDNAVQGL 9 Unmodified _IYDNAVQGL_ 0 0 0 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7562866210938 2 496.756007 991.497461 0.60215 0.00029912 0.31846 0.0001582 0.92061 0.00045732 496.75610236292914 49.455 0.43827 49.455 49.296 49.735 0 49 19 4 0 0 0 0.022193 2 27177 27177;27288 61.357 17.499 1 33676000 25004 2611 17005 17328 29462;29463 29462 0.001371771722460835 IYDNAVQGL 9 Unmodified _IYDNAVQGL_ 0 0 0 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5045776367188 1 992.504737 991.497461 0.34489 0.00034231 -0.1486 -0.00014749 0.19629 0.00019482 992.504786007606 49.454 0.25375 49.454 49.352 49.606 0 18 10 3 0 0 0 0.022193 1 27201 27201 61.357 21.408 1 2446400 25005 2611 17005 17328 29464 29464 0.001371771722460835 IYDNRKEKI 9 Unmodified _IYDNRKEKI_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2;ENST00000508066.1_1_4:36162071-36231213:-|nuORF ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5562438964844 3 393.555784 1177.64552 0.36433 0.00014339 -1.1139 -0.00043838 -0.74956 -0.00029499 393.5552320342373 23.189 0.8001 20.41 20.058 20.858 -2.7784 235 58 6 0 0 0 0.43463 1 12743 12743 10.8 2.3552 1 1932899999.9999998 25006 682 17006 17329 29465 29465 0.0638048842608896 IYDPNLAFL 9 Unmodified _IYDPNLAFL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2868041992188 2 533.2844 1064.55425 0.42459 0.00022642 0.8249 0.00043991 1.2495 0.00066633 533.2847308894454 87.134 0.41307 86.63 86.42 86.833 -0.50423 35 16 3 0 0 0 0.34999 2 47626 47626;47719 14.838 6.9281 1 1810600 25007 10025 17007 17330 29466;29467 29466 0.024552247287601858 IYDPNLAFLRF 11 Unmodified _IYDPNLAFLRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.8700561523438 2 684.869163 1367.72377 0.72343 0.00049546 0.20557 0.00014079 0.92901 0.00063625 684.8692609667561 90.407 0.42668 90.449 90.243 90.67 0.042183 54 14 5 0 0 0 0.018102 2 50344 50240;50344 80.676 55.685 1 132490000 25008 10025 17008 17331 29468;29469 29469 0.054619210113060035 IYDPNLAFLRF 11 Unmodified _IYDPNLAFLRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.8701782226562 2 684.869163 1367.72377 0.70939 0.00048584 0.13712 9.3907E-05 0.84651 0.00057975 684.8691467884905 99.079 0.21604 92.903 92.793 93.009 -6.1757 45 12 5 0 0 0 0.00029288 1 65838 65838 110.55 79.284 1 1269200000 25009 10025 17008 17331 29470 29470 0.054619210113060035 IYDPNLAFLRF 11 Unmodified _IYDPNLAFLRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.9154663085938 3 456.915201 1367.72377 0.54146 0.0002474 -0.11023 -5.0366E-05 0.43123 0.00019704 456.9154551645644 99.081 0.11596 92.906 92.841 92.957 -6.1757 14 6 3 0 0 0 0.036614 1 65887 65887 53.798 46.321 1 27389000 25010 10025 17008 17331 29471 29471 0.054619210113060035 IYDRETSL 8 Unmodified _IYDRETSL_ 0 0 0 REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__ENSG00000136002|ENST00000409359|ARHGEF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7542419433594 2 498.753464 995.492375 0.13243 6.6052E-05 0.78744 0.00039274 0.91987 0.00045879 498.7538076415059 66.766 0.26767 66.283 66.13 66.398 -0.48323 20 12 2 0 0 0 0.58902 1 36454 36454 26.884 3.7352 1 1681700 + 25011 20126 17009 17332 29472 29472 -0.0055512669038080276 IYDRFNSI 8 Unmodified _IYDRFNSI_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS AL20221201_MKP_PDAC_01 4 514.262939453125 2 514.263999 1026.51345 NaN NaN NaN NaN NaN NaN NaN 22.872 1 20.094 19.594 20.594 -2.7784 0 0 0 0.95973 1 12334 12334 8.5933 2.8329 1 + 25012 17684 17010 17333 29473 29473 0.0012488340912568674 IYDSVKVYF 9 Unmodified _IYDSVKVYF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2966918945312 2 567.297507 1132.58046 0.70427 0.00039953 -3.1743 -0.0018008 -2.47 -0.0014013 567.2969097706755 62.769 0.54524 62.283 62.12 62.665 -0.48617 53 26 3 0 0 0 0.06294 2 34196 34196;34304 41.84 14.956 1 13594000 25013 1156 17011 17334 29474;29475 29474 0.019474939002293468 IYDSVKVYF 9 Unmodified _IYDSVKVYF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.29736328125 2 567.297507 1132.58046 0.48558 0.00027547 -0.33262 -0.00018869 0.15297 8.6779E-05 567.2972053408117 62.37 0.58419 62.337 62.14 62.724 -0.032791 80 30 4 0 0 0 0.023481 2 34032 34032;34143 60.074 33.19 1 88586000 25014 1156 17011 17334 29476;29477 29476 0.019474939002293468 IYDSVKVYF 9 Unmodified _IYDSVKVYF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2977905273438 2 567.297507 1132.58046 0.79392 0.00045039 0.69528 0.00039443 1.4892 0.00084482 567.2978530064569 68.161 1.0298 61.986 61.46 62.49 -6.1757 130 60 3 0 0 0 0.044011 4 44544 44282;44419;44544;44683 47.749 13.646 1 299000000 25015 1156 17011 17334 29478;29479;29480;29481 29480 0.019474939002293468 IYDTHSLM 8 Oxidation (M) _IYDTHSLM(Oxidation (M))_ IYDTHSLM(1) IYDTHSLM(67) 0 0 1 ENSG00000155957|ENST00000358230|TMBIM4;ENST00000539652.1_1_12:66522892-66539669:-|nuORF ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2285461425781 2 498.228768 994.442982 -0.45134 -0.00022487 0.25437 0.00012673 -0.19697 -9.8137E-05 498.2287901649254 27.474 0.27645 27.474 27.341 27.617 0 26 13 3 0 0 0 0.21786 1 14128 14128 67.035 38.862 1 4145300 25016 6419 17012 17335 29482 29482 1128 -0.05446157970823151 IYDTHSLM 8 Unmodified _IYDTHSLM_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4;ENST00000539652.1_1_12:66522892-66539669:-|nuORF ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2320251464844 2 490.23131 978.448068 0.53634 0.00026293 0.082708 4.0546E-05 0.61905 0.00030348 490.2313141917253 46.114 0.34372 41.159 40.983 41.327 -4.9549 37 22 2 0 0 0 0.13235 1 28421 28421 90.836 38.143 1 16650000 25017 6419 17012 17336 29483 29483 -0.0420185410821432 IYDTSTDRLLW 11 Unmodified _IYDTSTDRLLW_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.8525390625 2 691.851167 1381.68778 0.1734 0.00011997 0.7931 0.00054871 0.9665 0.00066867 691.8517440774273 67.116 0.37154 67.116 66.971 67.342 0 42 15 4 0 0 0 0.04599 2 37404 37404;37502 51.765 33.63 1 4755000 25018 8189 17013 17337 29484;29485 29484 0.012204190437842044 IYDTSTDRLLW 11 Unmodified _IYDTSTDRLLW_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.8513793945312 2 691.851167 1381.68778 0.47804 0.00033073 -0.16778 -0.00011608 0.31027 0.00021466 691.8510115310249 67.599 0.50163 67.117 66.889 67.391 -0.48219 96 21 6 0 0 0 0.00017946 3 36859 36859;36970;37071 92.201 60.933 1 156310000 25019 8189 17013 17337 29486;29487;29488 29486 0.012204190437842044 IYDTSTDRLLW 11 Unmodified _IYDTSTDRLLW_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.8516235351562 2 691.851167 1381.68778 0.69413 0.00048024 0.20249 0.00014009 0.89662 0.00062033 691.8512813267417 67.094 0.46205 67.112 66.876 67.338 0.018036 86 22 5 0 0 0 0.0053109 2 36849 36747;36849 74.772 49.781 1 86841000 25020 8189 17013 17337 29489;29490 29490 0.012204190437842044 IYDTSTDRLLW 11 Unmodified _IYDTSTDRLLW_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.8509521484375 2 691.851167 1381.68778 0.48019 0.00033222 0.26441 0.00018293 0.7446 0.00051515 691.8513232642986 72.86 1.2026 66.684 66.123 67.326 -6.1757 116 60 2 0 0 0 2.4991E-15 5 47365 47365;47484;47602;47723;47840 139.38 97.423 1 133390000 25021 8189 17013 17337 29491;29492;29493;29494;29495 29491 0.012204190437842044 IYDTSTDRLLW 11 Unmodified _IYDTSTDRLLW_ 0 0 0 ENSG00000172183|ENST00000306072|ISG20;ENST00000558942.5_1_15:89195091-89198759:+|nuORF ENSG00000172183|ENST00000306072|ISG20 ENSG00000172183|ENST00000306072|ISG20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.8506469726562 2 691.851167 1381.68778 0.53574 0.00037065 0.19012 0.00013154 0.72586 0.00050219 691.8512319305821 74.731 2.7384 68.555 67.302 70.041 -6.1757 463 144 4 0 0 0 4.3583E-10 15 48201 48086;48201;48316;48433;48545;48665;48791;48913;49031;49152;49275;49395;49520;49636;49758 118.21 91.941 1 223870000 25022 8189 17013 17337 29496;29497;29498;29499;29500;29501;29502;29503;29504;29505;29506;29507;29508;29509;29510 29497 0.012204190437842044 IYDVLIRL 8 Unmodified _IYDVLIRL_ 0 0 0 ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6 ENSG00000165271|ENST00000297990|NOL6 ENSG00000165271|ENST00000297990|NOL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8116760253906 2 502.810585 1003.60662 0.3006 0.00015115 0.34282 0.00017238 0.64343 0.00032352 502.8106715049871 78.076 0.38759 78.129 77.915 78.302 0.052452 39 15 4 0 0 0 0.1875 2 43071 43071;43175 74.929 20.279 1 9979100 25023 7316 17014 17338 29511;29512 29511 0.10495807862366746 IYDVYRYL 8 Unmodified _IYDVYRYL_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7904052734375 2 552.78985 1103.56515 0.52483 0.00029012 0.34778 0.00019225 0.87262 0.00048237 553.2919453137687 67.155 0.43846 66.673 66.525 66.963 -0.48218 27 19 2 0 0 0 0.44637 1 36679 36679 48.346 25.197 1 2990000 25024 5348 17015 17339 29513 29513 0.01750627103047009 IYDVYRYL 8 Unmodified _IYDVYRYL_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 552.78985 1103.56515 0.9411 0.00052023 -1.304 -0.00072084 -0.36291 -0.00020061 552.7894654427678 66.677 0.18423 66.686 66.54 66.725 0.0095596 0.0065206 -0.00045577 NaN 48.346 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3262300 25025 5348 17015 17339 0.01750627103047009 IYDYAIVLF 9 Unmodified _IYDYAIVLF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3;chr4:25782418-25788224|38|31.03|0.74|5.39|-|0|SEL1L3,SEL1L3|1 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8018188476562 2 558.802426 1115.5903 1.6744 0.00093566 -1.8331 -0.0010243 -0.15866 -8.866E-05 558.80130614404 100.43 0.11258 100.39 100.32 100.43 -0.036301 11 3 4 0 0 0 0.14602 1 55805 55805 28.487 11.545 1 15309000 25026 1587 17016 17340 29514 29514 0.03712681905608406 IYDYAIVLF 9 Unmodified _IYDYAIVLF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3;chr4:25782418-25788224|38|31.03|0.74|5.39|-|0|SEL1L3,SEL1L3|1 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.802426 1115.5903 0.52372 0.00029265 -1.0788 -0.00060281 -0.55505 -0.00031016 558.8021892358182 100.51 0.065887 100.38 100.35 100.41 -0.13293 -0.0072732 0.00072922 NaN 28.487 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 866050 25027 1587 17016 17340 0.03712681905608406 IYEEDSSSSK 10 Unmodified _IYEEDSSSSK_ 0 0 0 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1729736328125 3 382.171664 1143.49316 NaN NaN NaN NaN NaN NaN NaN 38.355 1 38.355 37.855 38.855 0 0 0 0 0.64375 1 20481 20481 12.175 6.772 1 + 25028 22378 17017 17341 29515 29515 -0.07284376831989903 IYEEDSSSSK 10 Unmodified _IYEEDSSSSK_ 0 0 0 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7550659179688 2 572.753858 1143.49316 NaN NaN NaN NaN NaN NaN NaN 38.367 1 38.367 37.867 38.867 0 0 0 0 0.7417 1 20489 20489 14.838 6.9281 1 + 25029 22378 17017 17341 29516 29516 -0.07284376831989903 IYEEEPFNF 9 Unmodified _IYEEEPFNF_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2696533203125 2 594.266404 1186.51826 0.432 0.00025672 2.4914 0.0014805 2.9234 0.0017373 594.2682803287631 73.767 0.33164 73.767 73.591 73.922 0 28 13 3 0 0 0 0.11784 1 41048 41048 42.095 34.184 1 923800 + 25030 3178;197 17018 17342 29517 29517 -0.06754277238746909 IYEEEPFNF 9 Unmodified _IYEEEPFNF_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000481488.1_1_2:148695657-148695951:-|nuORF;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4;CON__Q2YDI2 ENSG00000115947|ENST00000392857|ORC4 MSMS AL20221201_MKP_PDAC_01 4 594.2667846679688 2 594.266404 1186.51826 NaN NaN NaN NaN NaN NaN NaN 81.708 1 75.532 75.032 76.032 -6.1757 0 0 0 0.15231 1 53647 53647 48.346 30.199 1 + 25031 3178;197 17018 17342 29518 29518 -0.06754277238746909 IYEEFLAAF 9 Unmodified _IYEEFLAAF_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF nc|ENSG00000163714|O15042-2|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7778930664062 2 551.776408 1101.53826 2.1471 0.0011847 -0.044935 -2.4794E-05 2.1022 0.0011599 551.7763647227193 95.197 0.43201 95.201 94.972 95.404 0.004158 38 15 3 0 0 0 0.40476 1 52974 52974 18.135 8.7875 1 3727100 25032 7056 17019 17343 29519 29519 -0.008444815081702473 IYEEFLAAF 9 Unmodified _IYEEFLAAF_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF;ENST00000491827.1_1_3:142733158-142735829:+|nuORF nc|ENSG00000163714|O15042-2|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.77783203125 2 551.776408 1101.53826 1.1638 0.00064215 0.60423 0.0003334 1.768 0.00097555 551.7764883905295 100.28 0.24057 94.107 94.03 94.27 -6.1757 30 15 3 0 0 0 0.32235 1 67019 67019 23.148 1.4018 1 81336000 25033 7056 17019 17343 29520 29520 -0.008444815081702473 IYEGVSSKP 9 Unmodified _IYEGVSSKP_ 0 0 0 ENST00000419783.1_2_3:49394673-49394790:-|nuORF ENST00000419783.1_2_3:49394673-49394790:-|nuORF ENST00000419783.1_2_3:49394673-49394790:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5087890625 1 979.509488 978.502212 0.52887 0.00051803 0.1973 0.00019326 0.72617 0.00071129 979.5090145123784 60.325 0.3343 60.325 60.116 60.451 0 22 14 2 0 0 0 0.32871 1 33694 33694 15.847 0 1 1248700 25034 13094 17020 17344 29521 29521 0.012100613149982564 IYEIIDNSQGF 11 Unmodified _IYEIIDNSQGF_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.8167724609375 2 649.816793 1297.61903 0.7355 0.00047794 -1.571 -0.0010209 -0.8355 -0.00054292 649.815670338009 75.998 0.28777 69.822 69.698 69.986 -6.1757 21 15 2 0 0 0 0.39949 1 49691 49691 21.537 10.713 1 8476400 25035 4666 17021 17345 29522 29522 -0.017872452559231533 IYEKKNKNT 9 Unmodified _IYEKKNKNT_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5662231445312 3 379.880267 1136.61897 1.6827 0.00063923 -0.020896 -7.938E-06 1.6618 0.00063129 379.8801975025028 37.208 0.78046 32.924 32.557 33.338 -4.2835 170 47 5 0 0 0 0.21144 1 21558 21558 7.1017 2.2047 1 1655199999.9999998 + 25036 17456 17022 17346 29523 29523 0.056127995347424076 IYEKYQDLYTV 11 Unmodified _IYEKYQDLYTV_ 0 0 0 nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1 nc|ENSG00000153956|P54289-4|CACNA2D1 nc|ENSG00000153956|P54289-4|CACNA2D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.9085388183594 3 478.909892 1433.70785 0.19778 9.4719E-05 -2.6396 -0.0012641 -2.4418 -0.0011694 478.9089738336557 52.507 0.2345 52.507 52.402 52.636 0 15 10 2 0 0 0 0.73349 1 29077 29077 1.1098 0.33322 1 2536300 25037 6285 17023 17347 29524 29524 0.008341699837501437 IYELRTYKL 9 Unmodified _IYELRTYKL_ 0 0 0 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2326049804688 3 400.23253 1197.67576 NaN NaN NaN NaN NaN NaN NaN 47.043 1 46.707 46.207 47.207 -0.33664 0 0 0 0.78465 1 25205 25205 6.6304 3.0433 1 25038 9222 17024 17348 29525 29525 0.0848284709127256 IYELRTYKL 9 Unmodified _IYELRTYKL_ 0 0 0 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2328796386719 3 400.23253 1197.67576 1.1702 0.00046837 -0.21392 -8.5617E-05 0.95631 0.00038275 400.2325445058659 46.73 0.32951 46.697 46.548 46.877 -0.033421 34 15 3 0 0 0 0.033587 1 25139 25139 53.404 23.967 1 8797200 25039 9222 17024 17348 29526 29526 0.0848284709127256 IYELRTYKL 9 Unmodified _IYELRTYKL_ 0 0 0 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 400.23253 1197.67576 0.68108 0.00027259 -0.64593 -0.00025852 0.035152 1.4069E-05 400.23221186466577 47.029 0.17653 46.692 46.524 46.701 -0.33664 -0.0024456 -0.00040093 NaN 53.404 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4082900 25040 9222 17024 17348 0.0848284709127256 IYEMILHEF 9 Oxidation (M) _IYEM(Oxidation (M))ILHEF_ IYEM(1)ILHEF IYEM(78)ILHEF 0 0 1 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7948608398438 2 605.794275 1209.574 0.016389 9.9282E-06 -0.3173 -0.00019222 -0.30091 -0.00018229 605.7944722431964 65.907 0.24829 65.422 65.314 65.562 -0.48428 24 10 3 0 0 0 0.010818 1 35978 35978 78.149 42.022 1 5330900 25041 347 17025 17349 29527 29527 39 -0.022407673227689884 IYEMIQEHI 9 Unmodified _IYEMIQEHI_ 0 0 0 REV__ENSG00000148513|ENST00000361713|ANKRD30A REV__ENSG00000148513|ENST00000361713|ANKRD30A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7928466796875 2 588.291899 1174.56925 0.17818 0.00010482 -1.7889 -0.0010524 -1.6107 -0.00094758 588.7924842286211 65.353 0.20986 64.869 64.749 64.959 -0.48428 13 9 2 0 0 0 0.39863 1 35693 35693 12.532 0.89125 1 1787400 + 25042 20957 17026 17350 29528 29528 -0.01105651465536539 IYENRIYSL 9 Unmodified _IYENRIYSL_ 0 0 0 ENST00000430836.1_1_20:3342707-3342845:-|nuORF;ENST00000483534.5_1_20:48699307-48713022:-|nuORF;nc|ENSG00000244687|Q13404-6|UBE2V1;ENST00000397758.2_1_3:175436135-175436456:-|nuORF;ENSG00000244687|ENST00000371674|UBE2V1;ENST00000467839.5_1_20:48700476-48729665:-|nuORF;nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1;nc|ENSG00000244687|Q13404-1|UBE2V1 ENST00000430836.1_1_20:3342707-3342845:-|nuORF ENST00000430836.1_1_20:3342707-3342845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.811279296875 2 585.811313 1169.60807 0.72633 0.00042549 -0.068461 -4.0105E-05 0.65786 0.00038538 585.8112387566198 50.003 0.3215 49.611 49.451 49.772 -0.3923 38 15 3 0 0 0 0.0093238 1 26883 26883 100.09 60.133 1 15393000 25043 10732 17027 17351 29529 29529 0.030053971604502294 IYENRIYSL 9 Unmodified _IYENRIYSL_ 0 0 0 ENST00000430836.1_1_20:3342707-3342845:-|nuORF;ENST00000483534.5_1_20:48699307-48713022:-|nuORF;nc|ENSG00000244687|Q13404-6|UBE2V1;ENST00000397758.2_1_3:175436135-175436456:-|nuORF;ENSG00000244687|ENST00000371674|UBE2V1;ENST00000467839.5_1_20:48700476-48729665:-|nuORF;nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1;nc|ENSG00000244687|Q13404-1|UBE2V1 ENST00000430836.1_1_20:3342707-3342845:-|nuORF ENST00000430836.1_1_20:3342707-3342845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8119506835938 2 585.811313 1169.60807 1.2104 0.00070904 -1.7672 -0.0010352 -0.55681 -0.00032619 585.8106436875615 49.667 0.19179 49.618 49.531 49.723 -0.048828 20 9 3 0 0 0 0.16019 1 26846 26846 34.932 10.258 1 2539000 25044 10732 17027 17351 29530 29530 0.030053971604502294 IYEPLHTHW 9 Unmodified _IYEPLHTHW_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2013244628906 3 399.201341 1194.58219 0.39348 0.00015708 0.14923 5.9575E-05 0.54272 0.00021665 399.20137715258466 46.194 0.19588 45.857 45.743 45.939 -0.33665 16 9 2 0 0 0 0.10247 1 24709 24709 32.786 27.054 1 5031000 25045 9082 17028 17352 29531 29531 -0.0073145229116562405 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3011474609375 2 595.30005 1188.58555 0.41072 0.0002445 0.70693 0.00042084 1.1177 0.00066534 595.3006689117343 101.03 0.12591 100.9 100.84 100.96 -0.13293 6 4 2 0 0 0 0.39863 1 55158 55158 12.532 3.1841 1 1584200 25046 1469 17029 17353 29532 29532 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2994384765625 2 595.30005 1188.58555 -0.1813 -0.00010793 -0.58291 -0.00034701 -0.76421 -0.00045494 595.2995810371106 101 0.19437 100.96 100.87 101.06 -0.04216 22 6 5 0 0 0 0.06187 1 56116 56116 42.095 20.348 1 127100000 25047 1469 17029 17353 29533 29533 -0.0012020223716717737 IYEPNFIFF 9 Unmodified _IYEPNFIFF_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.298828125 2 595.30005 1188.58555 0.39426 0.0002347 0.38979 0.00023204 0.78405 0.00046674 595.3000910812282 101.6 0.21553 95.425 95.309 95.524 -6.1757 41 10 6 0 0 0 0.16226 1 68161 68161 26.884 7.6267 1 936340000 25048 1469 17029 17353 29534 29534 -0.0012020223716717737 IYEQSCEAYK 10 Unmodified _IYEQSCEAYK_ 0 0 0 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 nc|ENSG00000152910|Q9C0A0-2|CNTNAP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 412.2488403320312 3 411.85339 1232.53834 1.3088 0.00053902 3.1955 0.0013161 4.5043 0.0018551 411.8546081048773 94.047 0.18307 87.871 87.749 87.932 -6.1757 16 9 2 0 0 0 0.23986 1 62285 62285 0.69767 0 1 8282400 25049 6219 17030 17354 29535 29535 -0.06862849570461549 IYEQVFAKL 9 Unmodified _IYEQVFAKL_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8140869140625 2 555.813325 1109.6121 0.52437 0.00029145 1.2718 0.0007069 1.7962 0.00099835 555.8138747358662 62.983 0.33836 62.961 62.771 63.109 -0.021614 44 16 4 0 0 0 0.044011 1 34404 34404 47.749 17.112 1 15718000 25050 3464 17031 17355 29536 29536 0.061674866541807205 IYEQVFAKL 9 Unmodified _IYEQVFAKL_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.28564453125 2 555.813325 1109.6121 0.90755 0.00050443 -0.29517 -0.00016406 0.61239 0.00034037 555.8129458751238 68.509 0.44145 62.334 62.17 62.612 -6.1757 45 25 2 0 0 0 0.1176 1 44735 44735 36.127 24.487 1 19440000 25051 3464 17031 17355 29537 29537 0.061674866541807205 IYEQVFAKL 9 Unmodified _IYEQVFAKL_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.2919311523438 2 555.813325 1109.6121 0.99756 0.00055446 1.3064 0.00072614 2.304 0.0012806 555.8136294686569 70.414 0.47699 64.238 63.897 64.374 -6.1757 35 26 2 0 0 0 0.021978 1 45992 45992 63.961 36.332 1 16813000 25052 3464 17031 17355 29538 29538 0.061674866541807205 IYEQVFAKL 9 Unmodified _IYEQVFAKL_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.813325 1109.6121 0.51394 0.00028566 -1.177 -0.00065417 -0.66301 -0.00036851 555.8122556156228 62.538 0.26692 62.516 62.375 62.642 -0.021614 0.091224 -0.00064112 NaN 36.127 33 13 4 NaN NaN NaN NaN 0 NaN NaN 0 7782000 25053 3464 17031 17355 0.061674866541807205 IYERLFCWI 9 Carbamidomethyl (C) _IYERLFC(Carbamidomethyl (C))WI_ IYERLFC(1)WI IYERLFC(70)WI 0 1 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.3325805664062 2 650.331359 1298.64816 0.47956 0.00031187 -0.57436 -0.00037352 -0.094802 -6.1653E-05 650.331185755645 99.632 0.15937 93.456 93.365 93.525 -6.1757 30 9 4 0 0 0 0.013609 1 66386 66386 70.332 51.959 1 197630000 25054 8612 17032 17356 29539 29539 825 0.010786205594058629 IYESCCIPCCQ 11 Unmodified _IYESCCIPCCQ_ 0 0 0 REV__nc|ENSG00000198961|O43164-2|PJA2 REV__nc|ENSG00000198961|O43164-2|PJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1629943847656 3 421.162184 1260.46472 -0.15092 -6.3561E-05 1.9396 0.00081687 1.7886 0.0007533 421.497108499686 70.325 0.22143 70.325 70.227 70.449 0 21 8 3 0 0 0 0.73451 1 39216 39216 1.0136 0.051299 1 525860 + 25055 24109 17033 17357 29540 29540 -0.15509180600429318 IYETIFNL 8 Unmodified _IYETIFNL_ 0 0 0 REV__ENST00000483414.1_1_7:73511493-73523492:+|nuORF REV__ENST00000483414.1_1_7:73511493-73523492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7713317871094 2 506.771126 1011.5277 0.41576 0.00021069 0.58589 0.00029691 1.0016 0.0005076 506.7710586943522 78.7 0.27558 78.7 78.575 78.851 0 21 12 3 0 0 0 0.80143 1 43747 43747 5.7604 0 1 695550 + 25056 18527 17034 17358 29541 29541 0.022395358374410534 IYEWTNDSL 9 Unmodified _IYEWTNDSL_ 0 0 0 REV__ENSG00000164151|ENST00000296564|ICE1 REV__ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3206176757812 2 570.764029 1139.5135 0.86026 0.00049101 -1.5801 -0.00090188 -0.71986 -0.00041087 570.7627249400458 73.821 0.3614 73.345 73.166 73.527 -0.47588 42 17 3 0 0 0 0.53666 1 40313 40313 5.2307 0.47466 1 8440100 + 25057 21878 17035 17359 29542 29542 -0.05067161381521146 IYFCTGYDPP 10 Unmodified _IYFCTGYDPP_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.507080078125 3 392.507442 1174.5005 -0.38851 -0.00015249 0.45815 0.00017983 0.069634 2.7332E-05 392.507601152727 41.713 0.23905 41.713 41.607 41.846 0 18 11 2 0 0 0 0.6966 1 22538 22538 1.5923 0 1 3737500 25058 480 17036 17360 29543 29543 -0.07977315765265303 IYFDGDFGHF 10 Unmodified _IYFDGDFGHF_ 0 0 0 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 nc|ENSG00000168827|Q96RP9-2|GFM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.266845703125 2 609.266739 1216.51892 NaN NaN NaN NaN NaN NaN NaN 73.67 1 73.194 72.694 73.694 -0.47588 0 0 0 0.51756 1 40317 40317 25.399 17.489 1 25059 16372 17037 17361 29544 29544 -0.08067437799059007 IYFDNCPLL 9 Carbamidomethyl (C) _IYFDNC(Carbamidomethyl (C))PLL_ IYFDNC(1)PLL IYFDNC(64)PLL 0 1 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7818603515625 2 577.781167 1153.54778 1.1731 0.0006778 -0.46242 -0.00026718 0.71069 0.00041062 577.7812205202575 89.659 0.82304 83.483 83.003 83.826 -6.1757 116 45 4 0 0 0 0.019303 3 59216 59093;59216;59338 64.236 48.389 1 82489000 25060 2658 17038 17362 29545;29546;29547 29546 269 -0.022850364942769374 IYFDSSHHYC 10 Unmodified _IYFDSSHHYC_ 0 0 0 REV__ENST00000368606.7_1_6:116782570-116784525:+|nuORF REV__ENST00000368606.7_1_6:116782570-116784525:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.5108947753906 3 424.509846 1270.50771 NaN NaN NaN NaN NaN NaN NaN 95.742 1 95.374 94.874 95.874 -0.36814 0 0 0 1.0019 1 52293 52293 0.15932 0 1 + 25061 26013 17039 17363 29548 29548 -0.11672583164818207 IYFEGKDLF 9 Unmodified _IYFEGKDLF_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF;REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2886352539062 2 566.289682 1130.56481 0.63726 0.00036088 -1.4353 -0.00081278 -0.798 -0.0004519 566.2887320867756 87.718 0.32225 87.214 87.038 87.36 -0.50423 32 14 3 0 0 0 0.50598 1 47939 47939 10.824 5.5933 1 1077800 + 25062 17227;27422 17040 17364 29549 29549 0.004752073831923553 IYFEVKRF 8 Unmodified _IYFEVKRF_ 0 0 0 REV__ENST00000368009.6_1_1:161090628-161090832:+|nuORF REV__ENST00000368009.6_1_1:161090628-161090832:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.8432922363281 3 367.874565 1100.60187 1.0548 0.00038804 -1.74 -0.0006401 -0.68519 -0.00025206 367.87401652434374 22.565 0.56867 19.786 19.478 20.047 -2.7784 79 36 3 0 0 0 8.7369 1 12301 12301 7.2892 2.96 1 6440700 + 25063 26002 17041 17365 29550 29550 0.055589237196272734 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.77197265625 2 588.771657 1175.52876 0.66187 0.00038969 -0.38841 -0.00022869 0.27346 0.000161 588.7713161340594 62.403 0.31374 61.915 61.726 62.04 -0.48764 36 14 3 0 0 0 0.078314 2 34047 33941;34047 42.095 35.371 1 11723000 25064 2957 17042 17366 29551;29552 29552 -0.05198249793670584 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.7718505859375 2 588.771657 1175.52876 0.36269 0.00021354 -0.34554 -0.00020344 0.017157 1.0101E-05 588.7710128893514 61.976 0.33165 61.943 61.808 62.14 -0.032787 43 16 4 0 0 0 0.078314 1 33825 33825 50.855 41.472 1 16044000 25065 2957 17042 17366 29553 29553 -0.05198249793670584 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2725830078125 2 588.771657 1175.52876 0.86552 0.00050959 -0.47108 -0.00027736 0.39444 0.00023223 588.7715075311054 69.221 0.72501 63.046 62.518 63.243 -6.1757 59 39 2 0 0 0 0.078314 3 45037 45037;45172;45305 50.855 32.72 1 29391000 25066 2957 17042 17366 29554;29555;29556 29554 -0.05198249793670584 IYFEYSHAF 9 Unmodified _IYFEYSHAF_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 588.771657 1175.52876 0.55221 0.00032513 -3.7591 -0.0022132 -3.2069 -0.0018881 589.2700099678058 68.21 0.091187 62.035 61.992 62.083 -6.1757 0.070134 -0.0039396 NaN 42.095 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 10217000 25067 2957 17042 17366 -0.05198249793670584 IYFFFGMII 9 Unmodified _IYFFFGMII_ 0 0 0 REV__ENSG00000064115|ENST00000343028|TM7SF3 REV__ENSG00000064115|ENST00000343028|TM7SF3 MSMS AL20221201_MKP_PDAC_01 4 575.8035888671875 2 575.803914 1149.59328 NaN NaN NaN NaN NaN NaN NaN 101.66 1 95.488 94.988 95.988 -6.1757 0 0 0 0.54015 1 68231 68231 14.582 2.0501 1 + 25068 17350 17043 17367 29557 29557 0.024462337587920047 IYFFHHYEL 9 Unmodified _IYFFHHYEL_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5414733886719 3 423.541475 1267.60259 0.2883 0.00012211 0.28631 0.00012126 0.5746 0.00024337 423.5415825285297 59.77 0.26157 59.717 59.574 59.836 -0.053062 36 12 4 0 0 0 0.2001 1 32562 32562 21.537 8.4945 1 17783000 25069 9014 17044 17368 29558 29558 -0.02050281631341022 IYFFHHYEL 9 Unmodified _IYFFHHYEL_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5416870117188 3 423.541475 1267.60259 1.0738 0.00045479 0.031824 1.3479E-05 1.1056 0.00046827 423.5414150820901 90.142 0.44456 83.967 83.774 84.219 -6.1757 38 25 2 0 0 0 0.052168 1 59487 59487 47.749 39.003 1 12648000 25070 9014 17044 17368 29559 29559 -0.02050281631341022 IYFFIRTL 8 Unmodified _IYFFIRTL_ 0 0 0 ENSG00000081148|ENST00000193391|IMPG2 ENSG00000081148|ENST00000193391|IMPG2 ENSG00000081148|ENST00000193391|IMPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2105712890625 3 358.211177 1071.6117 1.991 0.00071319 -1.9498 -0.00069843 0.041193 1.4756E-05 358.209527683945 33.719 0.47742 29.734 29.525 30.002 -3.9853 80 26 4 0 0 0 0.66338 1 19288 19288 20.454 0 1 21370000 25071 1318 17045 17369 29560 29560 0.07876111724999646 IYFFLCKSF 9 Carbamidomethyl (C) _IYFFLC(Carbamidomethyl (C))KSF_ IYFFLC(1)KSF IYFFLC(57)KSF 0 1 0 ENSG00000169313|ENST00000302632|P2RY12 ENSG00000169313|ENST00000302632|P2RY12 ENSG00000169313|ENST00000302632|P2RY12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8084716796875 2 612.809728 1223.6049 0.85111 0.00052157 -1.2221 -0.00074889 -0.37094 -0.00022732 612.8085203672059 68.709 0.50247 62.534 62.32 62.822 -6.1757 41 27 2 0 0 0 0.026094 1 44879 44879 57.471 7.5383 1 15685000 25072 7864 17046 17370 29561 29561 766 0.002044307821051916 IYFGDPQIF 9 Unmodified _IYFGDPQIF_ 0 0 0 ENSG00000131067|ENST00000336431|GGT7;nc|ENSG00000131067|Q9UJ14-4|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7 ENSG00000131067|ENST00000336431|GGT7;nc|ENSG00000131067|Q9UJ14-5|GGT7 ENSG00000131067|ENST00000336431|GGT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2755737304688 2 550.276575 1098.5386 0.48598 0.00026742 -2.3745 -0.0013066 -1.8885 -0.0010392 550.2751521992301 87.897 0.29721 87.393 87.239 87.536 -0.50423 20 13 2 0 0 0 0.41742 1 48086 48086 11.64 1.4569 1 881520 25073 4294;16189 17047 17371 29562 29562 -0.0067306178827948315 IYFILHLFF 9 Unmodified _IYFILHLFF_ 0 0 0 REV__ENSG00000166603|ENST00000299766|MC4R REV__ENSG00000166603|ENST00000299766|MC4R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8440551757812 2 606.844428 1211.6743 0.073688 4.4717E-05 -0.81134 -0.00049236 -0.73766 -0.00044764 606.8440209075952 100.98 0.10928 100.94 100.87 100.98 -0.04216 6 3 2 0 0 0 0.46577 1 56118 56118 9.3474 4.1168 1 20469000 + 25074 22137 17048 17372 29563 29563 0.0769325779317569 IYFIPRNVI 9 Unmodified _IYFIPRNVI_ 0 0 0 ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1 ENST00000476412.5_1_1:114308604-114340019:-|nuORF ENST00000476412.5_1_1:114308604-114340019:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8369140625 2 567.837134 1133.65972 0.31206 0.0001772 -0.7354 -0.00041759 -0.42334 -0.00024039 567.8368967861245 72.988 0.24496 73.03 72.901 73.146 0.041733 22 11 2 0 0 0 0.11784 1 40182 40182 42.095 20.348 1 7077800 25075 1313 17049 17373 29564 29564 0.09823185645018384 IYFKKPLNI 9 Unmodified _IYFKKPLNI_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.7250366210938 3 379.233982 1134.68012 0.60658 0.00023003 -0.43553 -0.00016517 0.17105 6.4867E-05 379.2339484964117 49.399 0.42765 49.356 49.049 49.476 -0.04369 33 20 3 0 0 0 0.20883 1 26645 26645 2.4985 0 1 7545900 25076 602 17050 17374 29565 29565 0.11816356304825604 IYFKKPLNI 9 Unmodified _IYFKKPLNI_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2343444824219 3 379.233982 1134.68012 1.167 0.00044257 -0.35041 -0.00013289 0.81659 0.00030968 379.2339285815556 54.587 0.25784 48.722 48.591 48.848 -5.8653 23 15 2 0 0 0 0.040683 1 34679 34679 49.554 19.714 1 21160000 25077 602 17050 17374 29566 29566 0.11816356304825604 IYFLLVERL 9 Unmodified _IYFLLVERL_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.353271484375 2 583.352617 1164.69068 2.0504 0.0011961 0.077817 4.5395E-05 2.1282 0.0012415 583.3521118462057 92.672 0.33205 92.702 92.573 92.905 0.030197 17 12 2 0 0 0 0.011671 1 51564 51564 75.761 37.787 1 2664500 25078 7952 17051 17375 29567 29567 0.11492338959283188 IYFNDYWNL 9 Unmodified _IYFNDYWNL_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2890014648438 2 624.290214 1246.56587 0.38298 0.00023909 -2.4734 -0.0015441 -2.0904 -0.001305 624.2891718607602 99.596 0.18439 93.42 93.324 93.508 -6.1757 27 11 4 0 0 0 0.30562 1 66372 66372 16.942 6.8684 1 71685000 25079 2242 17052 17376 29568 29568 -0.047545782479119225 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.25244140625 3 448.251701 1341.73327 0.41162 0.00018451 0.52494 0.00023531 0.93656 0.00041981 448.25191517143975 50.904 0.28086 50.491 50.338 50.619 -0.41351 36 13 3 0 0 0 0.21511 1 27407 27407 30.431 23.808 1 5084000 25080 4894 17053 17377 29569 29569 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2525024414062 3 448.251701 1341.73327 1.3418 0.00060146 -0.56593 -0.00025368 0.77586 0.00034778 448.2513987926527 50.574 0.44392 50.52 50.225 50.669 -0.053871 85 21 6 0 0 0 0.26767 2 27285 27285;27385 23.016 12.7 1 141720000 25081 4894 17053 17377 29570;29571 29570 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.876953125 2 671.873914 1341.73327 1.2166 0.00081738 -0.56247 -0.00037791 0.6541 0.00043947 671.8735253181505 50.574 0.26327 50.52 50.325 50.589 -0.053871 37 12 4 0 0 0 0.038834 1 27316 27316 53.317 36.204 1 9596200 25082 4894 17053 17377 29572 29572 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.251953125 3 448.251701 1341.73327 0.35581 0.00015949 0.57471 0.00025762 0.93053 0.00041711 448.25193637122527 56.11 0.67682 50.133 49.866 50.542 -5.9769 106 39 4 0 0 0 0.21511 2 35802 35672;35802 24.957 18.61 1 157060000 25083 4894 17053 17377 29573;29574 29574 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5862731933594 3 448.251701 1341.73327 0.81573 0.00036565 0.094513 4.2366E-05 0.91025 0.00040802 448.2516961739386 67.027 0.69815 60.851 60.519 61.217 -6.1757 57 38 2 0 0 0 0.10142 3 43728 43437;43591;43728 29.291 13.753 1 22484000 25084 4894 17053 17377 29575;29576;29577 29577 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.2523498535156 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 67.331 1 61.155 60.655 61.655 -6.1757 0 0 0 0.58065 1 43854 43854 12.856 2.5407 1 25085 4894 17053 17377 29578 29578 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.2524719238281 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 67.516 1 61.34 60.84 61.84 -6.1757 0 0 0 0.32157 1 43983 43983 21.241 4.9668 1 25086 4894 17053 17377 29579 29579 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.2518920898438 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 67.717 1 61.541 61.041 62.041 -6.1757 0 0 0 0.39541 1 44135 44135 23.016 9.497 1 25087 4894 17053 17377 29580 29580 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.2526550292969 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 67.91 1 61.734 61.234 62.234 -6.1757 0 0 0 0.71476 1 44283 44283 12.856 0.6812 1 25088 4894 17053 17377 29581 29581 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.25244140625 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 68.138 1 61.962 61.462 62.462 -6.1757 0 0 0 0.39541 1 44452 44452 23.016 13.251 1 25089 4894 17053 17377 29582 29582 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MSMS AL20221201_MKP_PDAC_01 4 448.2515258789062 3 448.251701 1341.73327 NaN NaN NaN NaN NaN NaN NaN 68.385 1 62.21 61.71 62.71 -6.1757 0 0 0 0.26205 1 44630 44630 24.229 15.477 1 25090 4894 17053 17377 29583 29583 0.07607689296833087 IYFPKKEAVTF 11 Unmodified _IYFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 671.3604125976562 2 671.873914 1341.73327 -0.088296 -5.9324E-05 -2.8247 -0.0018979 -2.913 -0.0019572 672.3714208427091 56.065 0.27104 50.144 50.006 50.277 -5.9211 24 15 2 0 0 0 0.097703 1 35729 35729 55.249 28.98 1 32860000 25091 4894 17053 17377 29584 29584 0.07607689296833087 IYFPSTVWFL 10 Unmodified _IYFPSTVWFL_ 0 0 0 ENST00000225665.11_1_17:4840913-4840994:-|nuORF ENST00000225665.11_1_17:4840913-4840994:-|nuORF ENST00000225665.11_1_17:4840913-4840994:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.8374633789062 2 636.8368 1271.65905 NaN NaN NaN NaN NaN NaN NaN 86.045 1 86.045 85.545 86.545 0 0 0 0 1.0019 1 47669 47669 0.45834 0 1 25092 11044 17054 17378 29585 29585 0.03408346205333146 IYFPSVTGI 9 Unmodified _IYFPSVTGI_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7;ENST00000510943.3_1_5:1078727-1081764:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MSMS AL20221201_MKP_PDAC_01 4 498.7738952636719 2 498.773668 995.532783 NaN NaN NaN NaN NaN NaN NaN 93.868 1 87.693 87.193 88.193 -6.1757 0 0 0 0.096036 1 62158 62158 44.407 14.182 1 25093 2971 17055 17379 29586 29586 0.03483839700038516 IYFPYYPY 8 Unmodified _IYFPYYPY_ 0 0 0 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 MSMS AL20221201_MKP_PDAC_01 4 563.26953125 2 563.268219 1124.52188 NaN NaN NaN NaN NaN NaN NaN 24.207 1 21.379 20.879 21.879 -2.8273 0 0 0 0.78208 1 13161 13161 24.21 0 1 25094 4778 17056 17380 29587 29587 -0.03539562674245644 IYFQAASHL 9 Unmodified _IYFQAASHL_ 0 0 0 nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2980346679688 2 525.274367 1048.53418 0.61701 0.0003241 1.943 0.0010206 2.56 0.0013447 525.2750296560472 52.324 0.29876 52.265 52.127 52.426 -0.058918 26 14 2 0 0 0 0.10661 1 28331 28331 37.974 7.3375 1 4557200 25095 16036 17057 17381 29588 29588 0.01185473788791569 IYFQAPVKI 9 Unmodified _IYFQAPVKI_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8197021484375 2 539.81841 1077.62227 0.27845 0.00015031 0.68262 0.00036849 0.96107 0.0005188 539.8187528877135 67.653 0.27396 67.671 67.534 67.808 0.018028 33 13 3 0 0 0 0.031062 1 37130 37130 54.774 24.549 1 16042000 25096 955 17058 17382 29589 29589 0.0865609437942112 IYFQPHVII 9 Unmodified _IYFQPHVII_ 0 0 0 REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1 REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3241577148438 2 565.32386 1128.63317 0.60202 0.00034034 0.24238 0.00013702 0.8444 0.00047736 565.3241332399232 79.243 0.20919 79.298 79.21 79.419 0.05497 13 7 2 0 0 0 0.48152 1 43825 43825 8.5933 0 1 3883600 + 25097 17952 17059 17383 29590 29590 0.0739949675371463 IYFRDSSFL 9 Unmodified _IYFRDSSFL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.2938842773438 2 574.292756 1146.57096 0.67966 0.00039033 -1.1344 -0.00065149 -0.45476 -0.00026116 574.2923107653082 65.2 0.26377 65.2 64.997 65.261 7.6294E-06 20 12 3 0 0 0 0.058763 1 35718 35718 53.404 17.277 1 5658900 25098 4151 17060 17384 29591 29591 0.003537256147183143 IYFRSYKL 8 Unmodified _IYFRSYKL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8750915527344 3 363.874565 1088.60187 NaN NaN NaN NaN NaN NaN NaN 45.462 1 45.434 44.934 45.934 -0.028011 0 0 0 0.59568 1 24424 24424 34.402 8.1336 1 25099 9962 17061 17385 29592 29592 0.06110923719620587 IYFRSYKLLL 10 Unmodified _IYFRSYKLLL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2658386230469 3 439.263941 1314.76999 1.1344 0.0004983 1.3453 0.00059095 2.4797 0.0010893 439.26466170363324 94.962 0.25583 88.787 88.693 88.949 -6.1757 18 13 2 0 0 0 0.60478 1 62949 62949 10.899 3.8648 1 6079000 25100 9962 17062 17386 29593 29593 0.12519985913422715 IYFRVMYLF 9 Unmodified _IYFRVMYLF_ 0 0 0 REV__ENST00000479435.1_1_13:108955687-108955841:+|nuORF REV__ENST00000479435.1_1_13:108955687-108955841:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.7631225585938 2 626.33337 1250.65219 0.26494 0.00016594 2.8622 0.0017927 3.1272 0.0019587 626.3353218667734 68.556 0.23502 68.076 67.967 68.202 -0.48071 12 10 2 0 0 0 0.19613 1 37519 37519 7.9102 0.3012 1 766870 + 25101 27656 17063 17387 29594 29594 0.03688710053097566 IYFTNIVSI 9 Unmodified _IYFTNIVSI_ 0 0 0 ENST00000239944.6_1_3:150261592-150261679:-|nuORF ENST00000239944.6_1_3:150261592-150261679:-|nuORF ENST00000239944.6_1_3:150261592-150261679:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.253662109375 2 535.30005 1068.58555 0.4166 0.00022301 -0.31326 -0.00016769 0.10334 5.5317E-05 535.3000119439512 64.769 0.21246 64.283 64.169 64.381 -0.48512 14 9 2 0 0 0 0.19891 1 35386 35386 7.2892 3.3448 1 547610 25102 11102 17064 17388 29595 29595 0.05399797762856906 IYGEKFEDENF 11 Unmodified _IYGEKFEDENF_ 0 0 0 ENSG00000196262|ENST00000468812|PPIA;nc|ENSG00000196262|P62937-2|PPIA;ENST00000527147.1_1_11:100537243-100537690:+|nuORF;ENSG00000171497|ENST00000307720|PPID ENSG00000196262|ENST00000468812|PPIA ENSG00000196262|ENST00000468812|PPIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 695.8121337890625 2 695.811707 1389.60886 0.45375 0.00031573 -0.32508 -0.00022619 0.12867 8.9531E-05 695.8121274487246 47.588 0.21344 47.588 47.494 47.707 0 21 9 3 0 0 0 0.13335 1 26069 26069 38.615 19.253 1 3074600 25103 9789 17065 17389 29596 29596 -0.07035852981152857 IYGEKLQFIF 10 Unmodified _IYGEKLQFIF_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF ENSG00000152253|ENST00000282074|SPC25 ENSG00000152253|ENST00000282074|SPC25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 628.853271484375 2 629.347532 1256.68051 0.81919 0.00051556 1.3144 0.00082718 2.1335 0.0013427 629.3487962828569 98.511 0.1282 92.335 92.237 92.365 -6.1757 14 8 2 0 0 0 0.10303 1 65320 65320 55.503 23.465 1 29194000 25104 6174 17066 17390 29597 29597 0.06243731234030747 IYGESISSHF 10 Unmodified _IYGESISSHF_ 0 0 0 nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2723388671875 2 570.272021 1138.52949 0.64347 0.00036695 -2.2973 -0.0013101 -1.6539 -0.00094315 570.2706408124163 46.575 0.32748 46.575 46.391 46.718 0 25 14 2 0 0 0 0.0093317 1 25467 25467 88.904 54.801 1 3315400 25105 7424 17067 17391 29598 29598 -0.03423455144638865 IYGESISSHF 10 Unmodified _IYGESISSHF_ 0 0 0 nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2726440429688 2 570.272021 1138.52949 0.79754 0.00045481 -0.61291 -0.00034953 0.18462 0.00010529 570.2715756712122 46.907 0.23698 46.571 46.424 46.661 -0.33664 27 11 3 0 0 0 0.0044003 1 25102 25102 100.37 60.422 1 7954400 25106 7424 17067 17391 29599 29599 -0.03423455144638865 IYGESISSHF 10 Unmodified _IYGESISSHF_ 0 0 0 nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.273193359375 2 570.272021 1138.52949 1.1459 0.00065346 0.6986 0.00039839 1.8445 0.0010519 570.2725077992933 52.765 0.46581 47.031 46.783 47.249 -5.7345 43 25 2 0 0 0 0.0044003 1 33370 33370 100.37 67.586 1 34358000 25107 7424 17067 17391 29600 29600 -0.03423455144638865 IYGGTYML 8 Oxidation (M) _IYGGTYM(Oxidation (M))L_ IYGGTYM(1)L IYGGTYM(78)L 0 0 1 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF ENSG00000057608|ENST00000380191|GDI2;ENST00000491154.1_1_X:153669338-153669692:+|nuORF ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.4385986328125 1 933.438631 932.431355 0.47456 0.00044297 -0.13081 -0.0001221 0.34375 0.00032087 933.4384387372058 52.447 0.38791 52.013 51.789 52.177 -0.43367 42 19 3 0 0 0 0.17881 1 28356 28356 78.445 35.477 1 6388000 25108 793;13986 17068 17392 29601 29601 122 -0.03756354994152389 IYGGTYML 8 Oxidation (M) _IYGGTYM(Oxidation (M))L_ IYGGTYM(1)L IYGGTYM(71)L 0 0 1 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000471972.1_1_X:153668686-153669692:+|nuORF;ENST00000491154.1_1_X:153669338-153669692:+|nuORF;ENST00000476540.1_1_X:153669338-153670248:+|nuORF ENSG00000057608|ENST00000380191|GDI2;ENST00000491154.1_1_X:153669338-153669692:+|nuORF ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.4387817382812 1 933.438631 932.431355 0.99883 0.00093234 -1.2501 -0.0011668 -0.25123 -0.0002345 933.4367973642042 59.387 0.4966 53.273 53.06 53.557 -6.1147 41 26 2 0 0 0 0.19755 1 38197 38197 70.865 23.944 1 24010000 25109 793;13986 17068 17392 29602 29602 122 -0.03756354994152389 IYGKDVFEAF 10 Unmodified _IYGKDVFEAF_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8004150390625 2 594.800414 1187.58628 0.45497 0.00027061 0.93778 0.00055779 1.3927 0.00082841 594.8004333366608 67.123 0.48817 66.64 66.355 66.844 -0.48244 59 22 4 0 0 0 0.30444 1 36675 36675 27.223 3.4335 1 8498700 25110 6576 17069 17393 29603 29603 -1.4075880926611717E-05 IYGLLKNPF 9 Unmodified _IYGLLKNPF_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1;ENST00000463270.1_1_10:27418274-27425210:-|nuORF nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8107299804688 2 532.810585 1063.60662 1.2595 0.00067106 -0.25183 -0.00013418 1.0076 0.00053688 532.8102577332548 88.153 0.63731 81.977 81.673 82.311 -6.1757 67 35 2 0 0 0 0.0083087 2 57989 57989;58106 101.72 65.678 1 30537000 25111 4852 17070 17394 29604;29605 29604 0.07735807862354704 IYGPKYIHPSF 11 Unmodified _IYGPKYIHPSF_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2367858886719 3 441.236163 1320.68666 0.69163 0.00030517 0.94133 0.00041535 1.633 0.00072052 441.2364870323249 48.162 0.35944 48.124 47.907 48.266 -0.038643 53 17 4 0 0 0 0.067723 2 25913 25913;26014 47.053 34.825 1 15952000 25112 9187 17071 17395 29606;29607 29606 0.03914249465560715 IYGPKYIHPSF 11 Unmodified _IYGPKYIHPSF_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MSMS AL20221201_MKP_PDAC_01 4 441.2364501953125 3 441.236163 1320.68666 NaN NaN NaN NaN NaN NaN NaN 53.634 1 47.83 47.33 48.33 -5.8042 0 0 0 0.0029369 1 33926 33926 78.116 48.835 1 25113 9187 17071 17395 29608 29608 0.03914249465560715 IYGPNVISI 9 Unmodified _IYGPNVISI_ 0 0 0 nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2789916992188 2 488.279118 974.543683 0.97218 0.0004747 0.40017 0.00019539 1.3723 0.00067009 488.2792671421438 81.211 0.95122 75.036 74.296 75.247 -6.1757 97 53 3 0 0 0 0.024882 1 52922 52922 58.679 12.658 1 70483000 25114 6650 17072 17396 29609 29609 0.055392420743373805 IYGQRKREIP 10 Unmodified _IYGQRKREIP_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5787353515625 3 420.578811 1258.7146 -0.13821 -5.8127E-05 -0.5591 -0.00023515 -0.69731 -0.00029327 420.57862348929604 35.639 0.41354 35.664 35.515 35.928 0.024967 27 12 3 0 0 0 0.48505 1 18838 18838 10.899 0 1 13029000 + 25115 24017 17073 17397 29610 29610 0.09559572445664344 IYGSSHSW 8 Unmodified _IYGSSHSW_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7128295898438 2 468.714142 935.413731 -0.45208 -0.0002119 1.1444 0.0005364 0.69232 0.0003245 468.71404960542856 30.425 0.42672 30.425 30.263 30.69 0 36 20 3 0 0 0 0.37649 1 15783 15783 46.921 12.734 1 2740700 25116 5216 17074 17398 29611 29611 -0.056559342048103645 IYGSSHSW 8 Unmodified _IYGSSHSW_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7147827148438 2 468.714142 935.413731 0.56551 0.00026506 1.1487 0.00053841 1.7142 0.00080348 468.71455647681324 30.393 0.23633 30.313 30.205 30.441 -0.080431 26 8 4 0 0 0 0.18881 1 15770 15770 74.396 24.727 1 6287800 25117 5216 17074 17398 29612 29612 -0.056559342048103645 IYGSSHSW 8 Unmodified _IYGSSHSW_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7148132324219 2 468.714142 935.413731 1.3099 0.00061395 0.10186 4.7745E-05 1.4117 0.00066169 468.7141257271755 34.015 0.43399 30.03 29.765 30.199 -3.9853 56 23 3 0 0 0 0.18881 2 19585 19463;19585 74.396 24.727 1 35898000 25118 5216 17074 17398 29613;29614 29614 -0.056559342048103645 IYGSSHSW 8 Unmodified _IYGSSHSW_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 468.714142 935.413731 0.75134 0.00035216 -3.8239 -0.0017923 -3.0726 -0.0014402 468.7116799777283 34.58 0.0648 30.485 30.438 30.503 -4.0951 0.07702 -0.0045703 NaN 74.396 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3545900 25119 5216 17074 17398 -0.056559342048103645 IYGTLLGCLW 10 Carbamidomethyl (C) _IYGTLLGC(Carbamidomethyl (C))LW_ IYGTLLGC(1)LW IYGTLLGC(78)LW 0 1 0 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3121948242188 2 598.312635 1194.61072 0.5154 0.00030837 -0.51279 -0.00030681 0.0026096 1.5614E-06 598.3128993693759 101.25 0.12035 95.073 95.004 95.125 -6.1757 15 7 3 0 0 0 0.017458 1 67909 67909 77.984 47.348 1 42708000 25120 6373 17075 17399 29615 29615 628 0.021195292937818522 IYGWQLTLL 9 Unmodified _IYGWQLTLL_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF;nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000005471|P21439-3|ABCB4 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8167724609375 2 553.815867 1105.61718 1.002 0.0005549 0.1145 6.3411E-05 1.1165 0.00061831 553.8157954295506 101.31 0.086304 95.134 95.091 95.178 -6.1757 7 4 2 0 0 0 0.25297 1 67983 67983 19.439 5.9311 1 6112100 25121 1413;310 17076 17400 29616 29616 0.06859790516796238 IYGYTFYSI 9 Unmodified _IYGYTFYSI_ 0 0 0 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 ENSG00000183978|ENST00000328434|COA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3015747070312 2 563.776408 1125.53826 1.9346 0.0010907 -2.1646 -0.0012203 -0.22993 -0.00012963 563.7761580442985 81.487 0.32719 81.547 81.425 81.752 0.059929 25 12 3 0 0 0 0.17666 1 45098 45098 13.508 6.7847 1 1550300 25122 9214 17077 17401 29617 29617 -0.019484815081341367 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2659912109375 2 545.266207 1088.51786 0.12788 6.9727E-05 -0.48612 -0.00026506 -0.35824 -0.00019534 545.2660311655012 61.868 0.33295 61.868 61.641 61.974 0 42 14 4 0 0 0 0.095049 2 34450 34450;34550 34.187 16.052 1 33754000 25123 3071 17078 17402 29618;29619 29618 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2666625976562 2 545.266207 1088.51786 NaN NaN NaN NaN NaN NaN NaN 62.353 1 61.866 61.366 62.366 -0.48764 0 0 0 0.10161 1 33973 33973 42.968 23.529 1 25124 3071 17078 17402 29620 29620 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2664794921875 2 545.266207 1088.51786 0.29094 0.00015864 0.40187 0.00021913 0.69282 0.00037777 545.2662365101941 62.046 0.27352 62.014 61.848 62.122 -0.032787 34 13 3 0 0 0 0.058206 1 33854 33854 42.968 24.833 1 15698000 25125 3071 17078 17402 29621 29621 -0.022856521679386788 IYGYVAEQF 9 Unmodified _IYGYVAEQF_ 0 0 0 ENST00000448693.2_1_3:52740223-52740934:+|nuORF;ENSG00000114902|ENST00000619898|SPCS1;nc|ENSG00000114902|Q9Y6A9|SPCS1 ENST00000448693.2_1_3:52740223-52740934:+|nuORF ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2667236328125 2 545.266207 1088.51786 0.71916 0.00039214 0.45726 0.00024933 1.1764 0.00064147 545.2663130076207 69.413 0.78142 63.237 62.743 63.525 -6.1757 122 42 5 0 0 0 0.058206 3 45210 45210;45337;45458 42.968 24.833 1 763560000 25126 3071 17078 17402 29622;29623;29624 29622 -0.022856521679386788 IYHAGESVDS 10 Unmodified _IYHAGESVDS_ 0 0 0 nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1 nc|ENSG00000143473|O95259-2|KCNH1 nc|ENSG00000143473|O95259-2|KCNH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2457275390625 2 539.246003 1076.47745 0.18596 0.00010028 0.11911 6.4228E-05 0.30507 0.00016451 539.2458350240242 23.878 0.36622 23.899 23.697 24.063 0.021185 23 15 2 0 0 0 0.44373 1 12262 12262 19.257 0 1 4107100 25127 5516 17079 17403 29625 29625 -0.057726185583760525 IYHCTEERLYT 11 Unmodified _IYHCTEERLYT_ 0 0 0 ENST00000588167.1_1_18:12009921-12028151:+|nuORF;ENST00000383376.9_1_18:12008408-12017827:+|nuORF;nc|ENSG00000141401|O14732-2|IMPA2;ENSG00000141401|ENST00000269159|IMPA2;SEH1L-IMPA2|2|fusion;SEH1L-IMPA2|1|fusion ENST00000588167.1_1_18:12009921-12028151:+|nuORF ENST00000588167.1_1_18:12009921-12028151:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 714.3348999023438 2 714.334827 1426.6551 NaN NaN NaN NaN NaN NaN NaN 40.168 1 35.639 35.139 36.139 -4.5294 0 0 0 0.93224 1 23958 23958 5.7319 0.43497 1 25128 5323 17080 17404 29626 29626 -0.04116111350685969 IYHDLEQSI 9 Unmodified _IYHDLEQSI_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.27978515625 2 559.279846 1116.54514 0.27352 0.00015297 0.011512 6.4382E-06 0.28503 0.00015941 559.2800700874266 42.095 0.57671 42.095 41.785 42.362 0 122 29 6 0 0 0 0.022193 1 22804 22804 61.357 23.182 1 180960000 25129 1782 17081 17405 29627 29627 -0.00847168627569772 IYHDLEQSI 9 Unmodified _IYHDLEQSI_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2808837890625 2 559.279846 1116.54514 0.19472 0.0001089 0.78046 0.00043649 0.97518 0.0005454 559.2806687069635 42.372 0.22398 42.066 41.9 42.124 -0.30682 12 10 2 0 0 0 0.0095811 1 22504 22504 81.613 2.885 1 18607000 25130 1782 17081 17405 29628 29628 -0.00847168627569772 IYHDLEQSI 9 Unmodified _IYHDLEQSI_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2803955078125 2 559.279846 1116.54514 0.78939 0.00044149 0.30654 0.00017144 1.0959 0.00061293 559.2799516172548 48.096 0.47106 42.862 42.616 43.087 -5.2339 96 28 4 0 0 0 0.013323 2 30011 29881;30011 71.134 25.434 1 293920000 25131 1782 17081 17405 29629;29630 29630 -0.00847168627569772 IYHDRVPDL 9 Unmodified _IYHDRVPDL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5343017578125 3 376.532979 1126.57711 -0.056377 -2.1228E-05 0.62987 0.00023717 0.5735 0.00021594 376.5332522371866 35.775 0.18382 35.775 35.674 35.858 0 20 8 3 0 0 0 0.2546 1 18909 18909 18.721 9.3381 1 5413100 25132 7963 17082 17406 29631 29631 0.018882438462242135 IYHGLATLL 9 Unmodified _IYHGLATLL_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7953796386719 2 500.794935 999.575317 0.49709 0.00024894 0.67097 0.00033602 1.1681 0.00058496 500.79510873566335 67.174 0.3675 67.192 67.007 67.375 0.018028 42 18 3 0 0 0 0.095049 2 36839 36839;36951 34.187 12.441 1 13107000 25133 4210 17083 17407 29632;29633 29632 0.07551234828292763 IYHHALHSRW 10 Unmodified _IYHHALHSRW_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.56298828125 3 440.563384 1318.66832 NaN NaN NaN NaN NaN NaN NaN 18.255 1 18.262 17.762 18.762 0.0060463 0 0 0 0.80171 1 9245 9245 12.228 6.0357 1 25134 9221 17084 17408 29634 29634 0.021735523341931184 IYHHALHSRW 10 Unmodified _IYHHALHSRW_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.8984680175781 3 440.563384 1318.66832 1.3001 0.00057279 0.16873 7.4336E-05 1.4689 0.00064712 440.56329718107503 20.788 0.264 18.095 17.941 18.205 -2.693 28 17 2 0 0 0 0.2125 1 11069 11069 32.616 20.442 1 3190300 25135 9221 17084 17408 29635 29635 0.021735523341931184 IYHHTGNNTF 10 Unmodified _IYHHTGNNTF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.28125 2 602.280712 1202.54687 -0.54938 -0.00033088 0.67287 0.00040525 0.12349 7.4373E-05 602.2811680626216 18.965 0.10917 18.988 18.926 19.035 0.023106 14 6 3 0 0 0 0.35903 1 9538 9538 24.021 7.0783 1 892800 25136 16283 17085 17409 29636 29636 -0.04630114818974107 IYHHTGNNTF 10 Unmodified _IYHHTGNNTF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8560485839844 3 401.856233 1202.54687 -0.52776 -0.00021208 0.81388 0.00032706 0.28612 0.00011498 401.85613052629907 18.97 0.12346 18.993 18.926 19.05 0.023106 18 7 3 0 0 0 0.35903 1 9542 9542 20.581 8.3403 1 2641600 25137 16283 17085 17409 29637 29637 -0.04630114818974107 IYHHTGNNTF 10 Unmodified _IYHHTGNNTF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8564453125 3 401.856233 1202.54687 1.2712 0.00051083 0.26967 0.00010837 1.5408 0.00061919 401.8562093465155 20.732 0.34279 18.039 17.901 18.244 -2.693 59 22 3 0 0 0 0.18021 2 11020 11020;11130 24.882 8.6972 1 13275000 25138 16283 17085 17409 29638;29639 29638 -0.04630114818974107 IYHHTGNNTF 10 Unmodified _IYHHTGNNTF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7823486328125 2 602.280712 1202.54687 0.5515 0.00033216 -0.38441 -0.00023153 0.16708 0.00010063 602.2806418858892 20.756 0.27145 18.063 17.934 18.205 -2.693 42 18 3 0 0 0 0.0575 2 11025 11025;11132 56.177 38.042 1 4731200 25139 16283 17085 17409 29640;29641 29640 -0.04630114818974107 IYHHTGNNTF 10 Unmodified _IYHHTGNNTF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH;nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 401.856233 1202.54687 -0.54679 -0.00021973 1.1491 0.00046177 0.6023 0.00024204 401.85635107963725 19.04 0.10649 19.04 19.004 19.11 0 0.023469 0.00023622 NaN 20.581 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 681530 25140 16283 17085 17409 -0.04630114818974107 IYHKLQIPF 9 Unmodified _IYHKLQIPF_ 0 0 0 REV__ENST00000367434.4_1_1:193155339-193155666:-|nuORF REV__ENST00000367434.4_1_1:193155339-193155666:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8945922851562 3 386.893848 1157.65972 0.87022 0.00033668 -0.48163 -0.00018634 0.38859 0.00015034 386.8937829011529 36.486 0.56227 32.293 32.018 32.58 -4.1928 65 34 2 0 0 0 0.46577 1 21267 21267 5.7319 2.1448 1 83300000 + 25141 25984 17086 17410 29642 29642 0.08719185645031757 IYHKYYHYL 9 Unmodified _IYHKYYHYL_ 0 0 0 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 ENSG00000182197|ENST00000378204|EXT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.8886108398438 3 433.888874 1298.64479 NaN NaN NaN NaN NaN NaN NaN 28.692 1 28.721 28.221 29.221 0.029564 0 0 0 0.36957 1 14945 14945 21.537 5.3879 1 25142 9030 17087 17411 29643 29643 0.007416937770358345 IYHNGFQDLLA 11 Unmodified _IYHNGFQDLLA_ 0 0 0 REV__nc|ENSG00000152092|O14525-3|ASTN1 REV__nc|ENSG00000152092|O14525-3|ASTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8882141113281 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 49.646 1 49.254 48.754 49.754 -0.3923 0 0 0 0.94165 1 26701 26701 0.45452 0.046251 1 + 25143 21101 17088 17412 29644 29644 0.007201845634881465 IYHNGFQDLLA 11 Unmodified _IYHNGFQDLLA_ 0 0 0 REV__nc|ENSG00000152092|O14525-3|ASTN1 REV__nc|ENSG00000152092|O14525-3|ASTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8875732421875 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 104.46 1 104.36 103.86 104.86 -0.096809 0 0 0 0.94307 1 56904 56904 0.08335 0 1 + 25144 21101 17088 17412 29645 29645 0.007201845634881465 IYHNGVLEF 9 Unmodified _IYHNGVLEF_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2781372070312 2 546.279649 1090.54475 0.31883 0.00017417 0.050459 2.7565E-05 0.36929 0.00020174 546.2795297895901 57.43 0.50803 56.94 56.558 57.066 -0.48974 59 23 4 0 0 0 0.042911 2 31255 31154;31255 48.346 27.892 1 9970900 25145 2747 17089 17413 29646;29647 29647 0.003094564432331026 IYHNGVLEF 9 Unmodified _IYHNGVLEF_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.279649 1090.54475 0.39519 0.00021589 -1.7158 -0.0009373 -1.3206 -0.00072142 546.2784333680553 56.95 0.57029 56.95 56.564 57.135 0 0.048237 -0.0015442 NaN 48.346 37 24 3 NaN NaN NaN NaN 0 NaN NaN 0 1493000 25146 2747 17089 17413 0.003094564432331026 IYHNPTANSF 10 Unmodified _IYHNPTANSF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2777099609375 2 582.277638 1162.54072 -0.2487 -0.00014481 0.54456 0.00031709 0.29586 0.00017227 582.2777483930217 32.589 0.54282 32.46 32.222 32.765 -0.12915 69 23 5 0 0 0 0.022967 1 16982 16982 72.968 48.947 1 60670000 25147 3878 17090 17414 29648 29648 -0.03404633050490702 IYHNPTANSF 10 Unmodified _IYHNPTANSF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.2772216796875 2 582.277638 1162.54072 0.3639 0.00021189 -0.3736 -0.00021754 -0.0097019 -5.6492E-06 582.2773098460451 32.42 0.27154 32.45 32.319 32.591 0.029743 27 10 3 0 0 0 0.051223 1 17003 17003 57.722 35.975 1 6624800 25148 3878 17090 17414 29649 29649 -0.03404633050490702 IYHNPTANSF 10 Unmodified _IYHNPTANSF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2783203125 2 582.277638 1162.54072 1.1261 0.0006557 1.7992 0.0010476 2.9252 0.0017033 582.2772448376909 37.065 0.70132 32.781 32.455 33.156 -4.2835 181 42 6 0 0 0 0.00019901 2 21552 21552;21674 117.76 51.304 1 224030000 25149 3878 17090 17414 29650;29651 29650 -0.03404633050490702 IYHPINQGF 9 Unmodified _IYHPINQGF_ 0 0 0 REV__ENSG00000180974|ENST00000641726|OR52E4 REV__ENSG00000180974|ENST00000641726|OR52E4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.8091430664062 2 544.779816 1087.54508 1.2563 0.00068443 2.5009 0.0013624 3.7572 0.0020469 544.7826018303821 58.471 0.48981 52.397 52.145 52.635 -6.0745 36 26 2 0 0 0 0.18482 1 37458 37458 19.439 4.8573 1 12830000 + 25150 23179 17091 17415 29652 29652 0.00480876163078392 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8695678710938 3 366.869591 1097.58694 -0.64515 -0.00023669 0.25252 9.2643E-05 -0.39263 -0.00014404 366.8696146866699 34.081 0.35825 34.081 33.888 34.247 0 57 18 4 0 0 0 0.060956 2 17865 17865;17977 42.312 16.044 1 88102000 25151 16605 17092 17416 29653;29654 29653 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.8032836914062 2 549.800749 1097.58694 -0.36474 -0.00020053 1.4311 0.00078683 1.0664 0.0005863 549.8022039256109 34.088 0.22018 34.088 33.97 34.19 0 24 11 3 0 0 0 0.014763 1 17914 17914 65.474 33.168 1 8685900 25152 16605 17092 17416 29655 29655 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8702087402344 3 366.869591 1097.58694 -0.2741 -0.00010056 0.29299 0.00010749 0.018886 6.9286E-06 366.8696818490617 34.278 0.38372 34.087 33.843 34.226 -0.19131 49 14 4 0 0 0 0.033587 2 17825 17825;17929 53.404 20.618 1 59358000 25153 16605 17092 17416 29656;29657 29656 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.8013916015625 2 549.800749 1097.58694 -0.25937 -0.0001426 -0.046105 -2.5349E-05 -0.30547 -0.00016795 549.8006629005347 34.294 0.28453 34.102 33.89 34.174 -0.19131 24 10 3 0 0 0 0.047194 1 17863 17863 49.554 27.808 1 2610700 25154 16605 17092 17416 29658 29658 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8695678710938 3 366.869591 1097.58694 0.077538 2.8447E-05 -0.34286 -0.00012579 -0.26532 -9.7339E-05 366.8694616731212 33.96 0.2655 33.989 33.837 34.103 0.028931 37 11 4 0 0 0 0.076472 1 17863 17863 38.615 18.2 1 8073200 25155 16605 17092 17416 29659 29659 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8699951171875 3 366.869591 1097.58694 1.0052 0.00036878 0.0018688 6.8559E-07 1.0071 0.00036946 366.8696080454529 38.52 0.65436 34.151 33.9 34.554 -4.3689 134 41 6 0 0 0 0.060956 3 22868 22609;22744;22868 42.312 16.044 1 445630000 25156 16605 17092 17416 29660;29661;29662 29662 0.04205431851596586 IYHPNVDKL 9 Unmodified _IYHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8011474609375 2 549.800749 1097.58694 0.31539 0.0001734 -1.3939 -0.00076639 -1.0785 -0.00059299 549.8009306622268 38.578 0.53144 34.209 33.964 34.495 -4.3689 86 33 3 0 0 0 0.0082968 2 22687 22687;22812 117.76 46.627 1 75645000 25157 16605 17092 17416 29663;29664 29663 0.04205431851596586 IYHQTASILK 10 Unmodified _IYHQTASILK_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;ENST00000375165.5_1_9:100368507-100388213:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8370971679688 2 587.334956 1172.65536 0.5996 0.00035217 0.34216 0.00020096 0.94176 0.00055313 587.3350080924545 62.136 0.36233 61.648 61.469 61.831 -0.48764 44 16 4 0 0 0 0.16785 1 33817 33817 38.176 2.0485 1 8546900 25158 4881 17093 17417 29665 29665 0.07593676431451968 IYHSHHPTL 9 Unmodified _IYHSHHPTL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8576354980469 3 368.857686 1103.55123 -0.56778 -0.00020943 0.67541 0.00024913 0.10763 3.9702E-05 368.8579869299859 17.162 0.11626 17.163 17.111 17.227 0.0010548 89 38 3 0 0 0 0.078314 1 8502 8502 38.176 28.025 1 3976100 25159 10167 17094 17418 29666 29666 0.0035939439460435096 IYHSHHPTL 9 Unmodified _IYHSHHPTL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8585510253906 3 368.857686 1103.55123 1.2212 0.00045046 0.6395 0.00023589 1.8607 0.00068634 368.8579762379034 18.082 0.31075 15.461 15.328 15.638 -2.6215 74 24 4 0 0 0 0.033587 2 9458 9458;9562 53.404 35.961 1 38439000 25160 10167 17094 17418 29667;29668 29667 0.0035939439460435096 IYHSHHPTL 9 Unmodified _IYHSHHPTL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7825927734375 2 552.78289 1103.55123 0.62501 0.00034549 0.65758 0.0003635 1.2826 0.00070899 552.7832227082173 18.111 0.19006 15.489 15.372 15.562 -2.6215 21 14 2 0 0 0 0.0082548 1 9503 9503 108 78.915 1 2794400 25161 10167 17094 17418 29669 29669 0.0035939439460435096 IYHSTDESVVR 11 Unmodified _IYHSTDESVVR_ 0 0 0 REV__ENSG00000134899|ENST00000652225|ERCC5 REV__ENSG00000134899|ENST00000652225|ERCC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.547607421875 3 435.88597 1304.63608 NaN NaN NaN NaN NaN NaN NaN 19.413 1 19.42 18.92 19.92 0.0078487 0 0 0 0.94148 1 9874 9874 1.4551 0.67859 1 + 25162 20021 17095 17419 29670 29670 -0.0040532465011438035 IYHTGTFAQI 10 Unmodified _IYHTGTFAQI_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7988891601562 2 575.798206 1149.58186 0.72457 0.00041721 0.080415 4.6303E-05 0.80499 0.00046351 575.7981871556703 47.749 0.31189 47.397 47.223 47.535 -0.3526 35 14 3 0 0 0 0.01132 1 25575 25575 85.272 41.414 1 24368000 25163 9804 17096 17420 29671 29671 0.013051279890078149 IYHTGTFAQI 10 Unmodified _IYHTGTFAQI_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7993774414062 2 575.798206 1149.58186 0.81912 0.00047165 0.98345 0.00056627 1.8026 0.0010379 575.7987728559507 47.493 0.30272 47.455 47.258 47.561 -0.038643 34 13 3 0 0 0 0.035736 1 25589 25589 65.235 29.108 1 10863000 25164 9804 17096 17420 29672 29672 0.013051279890078149 IYHTGTFAQI 10 Unmodified _IYHTGTFAQI_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000587552.5_1_19:5708410-5719801:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7987670898438 2 575.798206 1149.58186 0.63372 0.00036489 0.93309 0.00053727 1.5668 0.00090217 575.7988253061509 53.252 0.42586 47.448 47.216 47.642 -5.8042 72 26 3 0 0 0 0.13391 1 33612 33612 41.84 22.478 1 135920000 25165 9804 17096 17420 29673 29673 0.013051279890078149 IYHTVWKFF 9 Unmodified _IYHTVWKFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.222412109375 3 414.221965 1239.64407 0.35063 0.00014524 0.95141 0.0003941 1.302 0.00053933 414.2223436632954 69.197 0.22128 69.228 69.111 69.333 0.030914 26 10 4 0 0 0 0.32871 1 38014 38014 20.415 15.518 1 6218900 25166 7043 17097 17421 29674 29674 0.0338289912797336 IYHTVWKFF 9 Unmodified _IYHTVWKFF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2228393554688 3 414.221965 1239.64407 1.3765 0.00057017 0.95893 0.00039721 2.3354 0.00096737 414.22240064679636 95.265 0.23079 89.089 88.949 89.18 -6.1757 30 12 3 0 0 0 0.2143 1 63084 63084 26.268 20.076 1 23491000 25167 7043 17097 17421 29675 29675 0.0338289912797336 IYHYDIAHF 9 Unmodified _IYHYDIAHF_ 0 0 0 REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.7223205566406 3 393.525825 1177.55564 -0.83208 -0.00032745 -1.9795 -0.00077897 -2.8115 -0.0011064 393.52474815621315 32.958 0.31522 32.958 32.851 33.166 0 19 15 2 0 0 0 0.21767 1 17200 17200 2.9952 0.26005 1 793700 + 25168 20945 17098 17422 29676 29676 -0.0260314118252154 IYHYLFEI 8 Unmodified _IYHYLFEI_ 0 0 0 ENSG00000168876|ENST00000544612|ANKRD49 ENSG00000168876|ENST00000544612|ANKRD49 ENSG00000168876|ENST00000544612|ANKRD49 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.7518310546875 2 549.286943 1096.55933 0.82805 0.00045484 -2.5645 -0.0014087 -1.7365 -0.00095383 549.2858730224104 57.216 0.6848 51.188 50.705 51.39 -6.0275 81 39 3 0 0 0 8.7369 1 36515 36515 20.871 0 1 94349000 25169 7805 17099 17423 29677 29677 0.014915285913730258 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2513732910156 2 494.766178 987.517802 0.64962 0.00032141 0.73394 0.00036313 1.3836 0.00068454 494.7660150977033 51.416 0.29286 51.416 51.229 51.522 0 21 12 3 0 0 0 0.098824 1 28371 28371 36.466 12.256 1 2599400 25170 2240 17100 17424 29678 29678 0.023543926227148404 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7661437988281 2 494.766178 987.517802 0.39679 0.00019632 0.0025165 1.2451E-06 0.39931 0.00019756 494.7660725644657 51.891 0.36419 51.458 51.285 51.649 -0.43367 72 18 6 0 0 0 0.028712 2 27948 27948;28055 56.048 31.374 1 140850000 25171 2240 17100 17424 29679;29680 29679 0.023543926227148404 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7651062011719 2 494.766178 987.517802 0.086071 4.2585E-05 0.19642 9.7183E-05 0.28249 0.00013977 494.7661855193209 51.524 0.47045 51.47 51.306 51.777 -0.053871 77 23 5 0 0 0 0.016115 2 27844 27844;27952 67.413 42.739 1 151390000 25172 2240 17100 17424 29681;29682 29681 0.023543926227148404 IYIAGHPAF 9 Unmodified _IYIAGHPAF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.763916015625 2 494.766178 987.517802 0.94495 0.00046753 -0.12775 -6.3209E-05 0.8172 0.00040432 494.7660627302966 57.195 0.5889 51.167 50.907 51.496 -6.0275 108 33 4 0 0 0 0.028712 3 36412 36412;36550;36679 56.048 29.707 1 966760000 25173 2240 17100 17424 29683;29684;29685 29683 0.023543926227148404 IYIDASCLTW 10 Carbamidomethyl (C) _IYIDASC(Carbamidomethyl (C))LTW_ IYIDASC(1)LTW IYIDASC(46)LTW 0 1 0 ENST00000568233.5_1_16:67899033-67902523:+|nuORF;ENST00000551207.2_1_14:36289043-36289391:+|nuORF;ENSG00000102898|ENST00000219169|NUTF2 ENST00000568233.5_1_16:67899033-67902523:+|nuORF ENST00000568233.5_1_16:67899033-67902523:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2972412109375 2 621.297181 1240.57981 0.31394 0.00019505 -0.096596 -6.0015E-05 0.21734 0.00013503 621.2971771333473 92.72 0.83809 86.544 86.166 87.004 -6.1757 179 52 4 0 0 0 0.1028 1 61630 61630 46.021 27.875 1 276730000 25174 2078 17101 17425 29686 29686 206 -0.03085668811127107 IYIDRFEDL 9 Unmodified _IYIDRFEDL_ 0 0 0 ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.3038940429688 2 592.303321 1182.59209 0.052341 3.1001E-05 0.24189 0.00014327 0.29423 0.00017427 592.3036139379512 64.202 0.34847 64.202 63.997 64.345 0 42 14 4 0 0 0 0.025842 2 35750 35750;35856 57.722 17.765 1 7954800 25175 6170 17102 17426 29687;29688 29687 0.008096909235973726 IYIDRFEDL 9 Unmodified _IYIDRFEDL_ 0 0 0 ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3035888671875 2 592.303321 1182.59209 0.54542 0.00032306 -1.1234 -0.00066541 -0.57801 -0.00034236 592.3026224133142 64.69 0.43095 64.205 64.059 64.49 -0.48512 38 19 3 0 0 0 0.025842 1 35272 35272 57.722 13.864 1 5208800 25176 6170 17102 17426 29689 29689 0.008096909235973726 IYIDRFEDL 9 Unmodified _IYIDRFEDL_ 0 0 0 ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP ENSG00000152219|ENST00000282032|ARL14EP MSMS AL20221201_MKP_PDAC_01 4 592.3026733398438 2 592.303321 1182.59209 NaN NaN NaN NaN NaN NaN NaN 82.668 1 76.492 75.992 76.992 -6.1757 0 0 0 0.12337 1 54313 54313 39.957 24.11 1 25177 6170 17102 17426 29690 29690 0.008096909235973726 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.3067626953125 2 541.305667 1080.59678 0.1423 7.7026E-05 0.92522 0.00050083 1.0675 0.00057785 541.3060296570821 63.314 0.46183 62.828 62.642 63.104 -0.48617 51 20 4 0 0 0 0.091924 2 34493 34493;34591 34.932 13.185 1 17041000 25178 1757 17103 17427 29691;29692 29691 0.059706198569983826 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3056030273438 2 541.305667 1080.59678 0.31372 0.00016982 0.53596 0.00029012 0.84967 0.00045993 541.305984956096 62.914 0.27292 62.892 62.735 63.008 -0.021614 33 13 3 0 0 0 0.062454 1 34389 34389 41.956 17.282 1 11877000 25179 1757 17103 17427 29693 29693 0.059706198569983826 IYIDRGVVF 9 Unmodified _IYIDRGVVF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11;nc|ENSG00000100109|Q9UBB9-2|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.305667 1080.59678 0.1423 7.7026E-05 0.92522 0.00050083 1.0675 0.00057785 541.3060296570821 63.314 0.46183 62.828 62.642 63.104 -0.48617 -0.032107 0.00020486 NaN 41.956 51 20 4 NaN NaN NaN NaN 0 NaN NaN 0 17041000 25180 1757 17103 17427 0.059706198569983826 IYIFPNLMP 9 Unmodified _IYIFPNLMP_ 0 0 0 REV__OR1E1|p.S291I|1|0.17|ENSG00000180016|chr17:3397539-3397539|C/A|missense_variant REV__OR1E1|p.S291I|1|0.17|ENSG00000180016|chr17:3397539-3397539|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2587280273438 2 554.298996 1106.58344 0.86662 0.00048037 3.9804 0.0022063 4.847 0.0026867 554.3016364339691 57.249 0.18893 57.249 57.135 57.324 0 12 8 2 0 0 0 0.20528 1 31870 31870 8.5933 0.68312 1 1372300 + 25181 30065 17104 17428 29694 29694 0.0344104575340225 IYIGGQEHF 9 Unmodified _IYIGGQEHF_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2636108398438 2 532.263999 1062.51345 0.016024 8.5287E-06 1.7961 0.00095602 1.8122 0.00096455 532.2647787314072 45.242 0.30859 45.242 45.016 45.324 0 45 15 4 0 0 0 0.06294 1 24603 24603 41.84 3.6884 1 35389000 25182 6567 17105 17429 29695 29695 -0.015311165908542534 IYIGGQEHF 9 Unmodified _IYIGGQEHF_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2637939453125 2 532.263999 1062.51345 -0.039188 -2.0858E-05 0.79638 0.00042388 0.75719 0.00040302 532.2641686404497 45.493 0.29744 45.169 45.059 45.357 -0.32425 31 16 3 0 0 0 0.039985 1 24286 24286 49.933 3.0121 1 26914000 25183 6567 17105 17429 29696 29696 -0.015311165908542534 IYIGGQEHF 9 Unmodified _IYIGGQEHF_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2651977539062 2 532.263999 1062.51345 0.99853 0.00053148 1.9145 0.001019 2.913 0.0015505 532.2652434980271 50.957 0.44055 45.308 45.088 45.528 -5.649 73 26 4 0 0 0 0.024882 2 32078 31943;32078 58.679 7.6442 1 155550000 25184 6567 17105 17429 29697;29698 29698 -0.015311165908542534 IYIGLLQQL 9 Unmodified _IYIGLLQQL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.324951171875 2 530.823692 1059.63283 1.1308 0.00060025 -1.0984 -0.00058305 0.032395 1.7196E-05 530.8233749661784 100.41 0.1501 94.239 94.141 94.291 -6.1757 18 9 3 0 0 0 0.027803 1 67118 67118 56.541 12.134 1 42743000 25185 4858 17106 17430 29699 29699 0.10540077033874695 IYIGLPRAL 9 Unmodified _IYIGLPRAL_ 0 0 0 ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3216552734375 2 508.318577 1014.6226 0.58149 0.00029558 2.3706 0.001205 2.9521 0.0015006 508.31969941723503 50.926 0.2607 50.872 50.766 51.026 -0.053871 27 12 3 0 0 0 0.03327 1 27554 27554 53.576 2.7205 1 8905100 25186 8411 17107 17431 29700 29700 0.11587514099278451 IYIHAHNTI 9 Unmodified _IYIHAHNTI_ 0 0 0 nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1983642578125 3 361.197819 1080.57163 1.3625 0.00049213 -0.00048896 -1.7661E-07 1.362 0.00049195 361.197772979343 31.902 0.32302 28.206 28.035 28.358 -3.6958 38 17 3 0 0 0 0.013041 2 18043 18043;18166 71.922 36.99 1 29986000 25187 10855 17108 17432 29701;29702 29701 0.03456565054420935 IYIHAHNTI 9 Unmodified _IYIHAHNTI_ 0 0 0 nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE MSMS AL20221201_MKP_PDAC_01 4 541.2950439453125 2 541.293091 1080.57163 NaN NaN NaN NaN NaN NaN NaN 31.929 1 28.233 27.733 28.733 -3.6958 0 0 0 0.0065554 1 18134 18134 111.29 66.88 1 25188 10855 17108 17432 29703 29703 0.03456565054420935 IYIINVHSM 9 Oxidation (M) _IYIINVHSM(Oxidation (M))_ IYIINVHSM(1) IYIINVHSM(63) 0 0 1 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2874755859375 2 553.289159 1104.56377 0.48256 0.000267 2.3721 0.0013124 2.8546 0.0015794 553.2910731747617 48.99 0.51272 48.618 48.369 48.882 -0.37172 41 25 2 0 0 0 0.020973 2 26197 26197;26312 62.573 24.422 1 34761000 25189 2306 17109 17433 29704;29705 29704 396 0.015666697426240717 IYIINVHSM 9 Oxidation (M) _IYIINVHSM(Oxidation (M))_ IYIINVHSM(1) IYIINVHSM(46) 0 0 1 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8016357421875 2 553.289159 1104.56377 0.40841 0.00022597 1.7509 0.00096874 2.1593 0.0011947 553.2902951713114 48.62 0.49175 48.576 48.261 48.753 -0.04369 84 24 5 0 0 0 0.07631 1 26232 26232 45.7 17.213 1 29415000 25190 2306 17109 17433 29706 29706 396 0.015666697426240717 IYIINVHSM 9 Unmodified _IYIINVHSM_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2929077148438 2 545.291702 1088.56885 NaN NaN NaN NaN NaN NaN NaN 61.092 1 60.603 60.103 61.103 -0.48932 0 0 0 0.18351 1 33273 33273 32.786 11.039 1 25191 2306 17109 17434 29707 29707 0.0281097360525564 IYIINVHSM 9 Unmodified _IYIINVHSM_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2918090820312 2 545.291702 1088.56885 0.54641 0.00029795 1.6793 0.00091574 2.2258 0.0012137 545.2931689758725 66.316 0.84024 60.14 59.841 60.681 -6.1757 116 47 3 0 0 0 0.010611 3 43184 43057;43184;43268 78.728 28.908 1 124100000 25192 2306 17109 17434 29708;29709;29710 29709 0.0281097360525564 IYIINVHSM 9 Unmodified _IYIINVHSM_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2943725585938 2 545.291702 1088.56885 0.64683 0.00035271 3.1433 0.001714 3.7901 0.0020667 545.293301812168 67.102 0.5914 60.926 60.681 61.272 -6.1757 78 32 3 0 0 0 0.032796 2 43780 43651;43780 53.833 24.828 1 42604000 25193 2306 17109 17434 29711;29712 29712 0.0281097360525564 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.893798828125 3 389.89396 1166.66005 -0.36578 -0.00014262 -0.27164 -0.00010591 -0.63742 -0.00024853 389.8938355461876 41.691 0.47657 41.689 41.491 41.968 -0.0017929 89 22 6 0 0 0 0.045537 3 22331 22224;22331;22446 61.357 37.568 1 1067199999.9999999 25194 1970 17110 17435 29713;29714;29715 29714 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3365478515625 2 584.337301 1166.66005 0.087947 5.1391E-05 -0.39589 -0.00023133 -0.30794 -0.00017994 584.3370531415578 41.689 0.26659 41.687 41.534 41.801 -0.0017929 37 12 4 0 0 0 0.010877 1 22262 22262 77.984 27.129 1 37863000 25195 1970 17110 17435 29716 29716 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8938598632812 3 389.89396 1166.66005 1.0457 0.00040773 -0.39712 -0.00015483 0.64862 0.00025289 389.8938313907301 47.067 0.40716 41.987 41.818 42.225 -5.0805 81 35 3 0 0 0 0.013472 2 29083 29083;29215 62.573 38.783 1 60060000 25196 1970 17110 17435 29717;29718 29717 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8945617675781 3 389.89396 1166.66005 1.4819 0.0005778 -0.11877 -4.6306E-05 1.3632 0.00053149 389.8938564101716 87.72 0.89965 81.545 81.075 81.975 -6.1757 192 49 5 0 0 0 0.027803 4 57641 57641;57766;57888;58010 58.679 58.679 1 964430000 25197 1970 17110 17435 29719;29720;29721;29722 29719 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3378295898438 2 584.337301 1166.66005 1.1278 0.000659 -0.048095 -2.8104E-05 1.0797 0.0006309 584.3371729744415 87.756 1.3685 81.58 81.182 82.551 -6.1757 124 41 4 0 0 0 0.010877 3 57878 57756;57878;57998 77.984 51.101 1 173150000 25198 1970 17110 17435 29723;29724;29725 29724 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MSMS AL20221201_MKP_PDAC_01 4 584.3359375 2 584.337301 1166.66005 NaN NaN NaN NaN NaN NaN NaN 47.013 1 41.932 41.432 42.432 -5.0805 0 0 0 0.096036 1 29131 29131 44.407 27.294 1 25199 1970 17110 17435 29726 29726 0.08338605364883733 IYIKHPHLF 9 Unmodified _IYIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 389.89396 1166.66005 -0.22506 -8.7749E-05 0.13673 5.3312E-05 -0.088325 -3.4437E-05 389.8939803379419 41.918 0.16502 41.611 41.535 41.701 -0.30682 -0.15131 0.00049997 NaN 62.573 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4677000 25200 1970 17110 17435 0.08338605364883733 IYIKHPHLFKY 11 Unmodified _IYIKHPHLFKY_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.947265625 3 486.946724 1457.81834 0.11504 5.602E-05 -0.020078 -9.7768E-06 0.094965 4.6243E-05 486.9466583517114 37.545 0.23496 37.562 37.438 37.673 0.01704 27 11 3 0 0 0 0.078696 1 19909 19909 44.945 27.896 1 8415700 25201 1970 17111 17436 29727 29727 0.10774479553310812 IYIKHPHLFKY 11 Unmodified _IYIKHPHLFKY_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.462646484375 4 365.461862 1457.81834 1.451 0.00053027 0.032791 1.1984E-05 1.4838 0.00054226 365.46183970385266 92.546 0.71588 86.37 85.967 86.683 -6.1757 100 43 3 0 0 0 0.17474 3 61294 61032;61165;61294 33.821 24.578 1 32729000 25202 1970 17111 17436 29728;29729;29730 29730 0.10774479553310812 IYIKHPHLFKY 11 Unmodified _IYIKHPHLFKY_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MSMS AL20221201_MKP_PDAC_01 4 486.9468994140625 3 486.946724 1457.81834 NaN NaN NaN NaN NaN NaN NaN 92.574 1 86.398 85.898 86.898 -6.1757 0 0 0 0.14456 1 61225 61225 43.477 19.676 1 25203 1970 17111 17436 29731 29731 0.10774479553310812 IYIKHPHLFKY 11 Unmodified _IYIKHPHLFKY_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MSMS AL20221201_MKP_PDAC_01 4 486.947998046875 3 486.946724 1457.81834 NaN NaN NaN NaN NaN NaN NaN 92.773 1 86.598 86.098 87.098 -6.1757 0 0 0 0.31193 1 61361 61361 32.616 23.373 1 25204 1970 17111 17436 29732 29732 0.10774479553310812 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5722351074219 3 385.237504 1152.69068 -0.077301 -2.9779E-05 -0.11312 -4.3579E-05 -0.19042 -7.3358E-05 385.2373929350041 45.122 0.29364 45.094 44.949 45.243 -0.028011 41 16 3 0 0 0 0.010611 2 24198 24198;24300 63.227 37.207 1 232900000 25205 2142 17112 17437 29733;29734 29733 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3529663085938 2 577.352617 1152.69068 0.22612 0.00013055 0.36092 0.00020838 0.58704 0.00033893 577.3528021720238 45.103 0.19476 45.075 44.991 45.185 -0.028011 26 11 3 0 0 0 0.00085914 1 24207 24207 140.63 92.884 1 36484000 25206 2142 17112 17437 29735 29735 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2381286621094 3 385.237504 1152.69068 1.4955 0.00057613 -0.060632 -2.3358E-05 1.4349 0.00055277 385.2374293713941 50.101 0.67778 44.562 44.251 44.929 -5.5391 145 43 5 0 0 0 0.01958 3 31343 31206;31343;31482 55.235 37.792 1 906350000 25207 2142 17112 17437 29736;29737;29738 29737 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.353759765625 2 577.352617 1152.69068 1.1315 0.00065327 0.62832 0.00036276 1.7598 0.001016 577.3526408659532 50.082 0.45906 44.543 44.332 44.791 -5.5391 94 29 4 0 0 0 0.0032147 2 31262 31262;31401 125.53 77.78 1 211020000 25208 2142 17112 17437 29739;29740 29739 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2408447265625 3 385.237504 1152.69068 1.626 0.0006264 3.9455 0.0015199 5.5715 0.0021463 385.2395703938188 53.933 0.63305 48.068 47.65 48.283 -5.8653 65 38 2 0 0 0 0.13231 1 34123 34123 28.234 21.197 1 15733000 25209 2142 17112 17437 29741 29741 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2374877929688 3 385.237504 1152.69068 1.0091 0.00038876 0.054683 2.1066E-05 1.0638 0.00040982 385.2373970231098 56.824 0.47926 50.847 50.668 51.147 -5.9769 46 28 2 0 0 0 0.0094097 2 36416 36265;36416 67.081 46.5 1 23213000 25210 2142 17112 17437 29742;29743 29743 0.12044338959276502 IYIKQIKTF 9 Unmodified _IYIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MSMS AL20221201_MKP_PDAC_01 4 385.2382507324219 3 385.237504 1152.69068 NaN NaN NaN NaN NaN NaN NaN 51.183 1 45.534 45.034 46.034 -5.649 0 0 0 0.12343 1 32185 32185 51.415 33.973 1 25211 2142 17112 17437 29744 29744 0.12044338959276502 IYIKRAAEI 9 Unmodified _IYIKRAAEI_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685297-7685959:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5538024902344 3 359.553603 1075.63898 1.9651 0.00070656 0.20773 7.469E-05 2.1728 0.00078125 359.5535340255475 35.832 0.37948 31.639 31.44 31.82 -4.1928 54 23 3 0 0 0 0.24903 1 20800 20800 19.626 3.0601 1 10044000 25212 1197 17113 17438 29745 29745 0.1041859526535518 IYIKRAAEI 9 Unmodified _IYIKRAAEI_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7685297-7685959:-|nuORF;ENST00000600230.1_1_19:7685297-7686162:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 359.553603 1075.63898 -0.48865 -0.0001757 0.07539 2.7107E-05 -0.41326 -0.00014859 359.887757986409 31.86 0.099825 31.86 31.82 31.92 0 0.11049 -0.00013597 NaN 19.626 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 419080 25213 1197 17113 17438 0.1041859526535518 IYILDKPME 9 Unmodified _IYILDKPME_ 0 0 0 REV__nc|ENSG00000120690|P32519-2|ELF1 REV__nc|ENSG00000120690|P32519-2|ELF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.299560546875 2 561.299193 1120.58383 NaN NaN NaN NaN NaN NaN NaN 41.139 1 41.139 40.639 41.639 0 0 0 0 0.032808 1 22165 22165 65.235 0 1 + 25214 19254 17114 17439 29746 29746 0.028364206825926885 IYILNGTKF 9 Unmodified _IYILNGTKF_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.310791015625 2 534.808042 1067.60153 0.43934 0.00023496 1.2772 0.00068307 1.7166 0.00091803 534.8083373231318 56.725 0.18115 56.656 56.578 56.76 -0.068737 12 8 2 0 0 0 0.34999 1 30892 30892 14.838 3.198 1 1319800 + 25215 22523 17115 17440 29747 29747 0.07043503999761924 IYINSRSVF 9 Unmodified _IYINSRSVF_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8016967773438 2 549.800749 1097.58694 0.18358 0.00010093 0.73303 0.00040302 0.91661 0.00050395 549.8011496516435 53.158 0.37952 53.095 52.882 53.262 -0.063423 58 18 4 0 0 0 0.010362 2 28758 28758;28866 96.367 44.098 1 64971000 25216 5996 17116 17441 29748;29749 29748 0.042054318516193234 IYINSRSVF 9 Unmodified _IYINSRSVF_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.777587890625 2 549.800749 1097.58694 1.2423 0.00068303 -0.34462 -0.00018947 0.89771 0.00049356 549.8005036741529 59.114 0.46143 53.04 52.798 53.26 -6.0745 83 25 4 0 0 0 0.18811 1 37836 37836 17.113 4.5813 1 150450000 25217 5996 17116 17441 29750 29750 0.042054318516193234 IYINSRSVFL 10 Unmodified _IYINSRSVFL_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3449096679688 2 606.342781 1210.67101 0.85997 0.00052144 0.0074129 4.4948E-06 0.86738 0.00052593 606.3429687085622 66.691 0.34885 66.701 66.5 66.849 0.0095596 35 16 3 0 0 0 0.04848 1 36591 36591 59.052 26.747 1 9594300 25218 5996 17117 17442 29751 29751 0.07409962948531756 IYIPSYFDF 9 Unmodified _IYIPSYFDF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210016778-210017042:+|nuORF ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7852783203125 2 582.784233 1163.55391 1.5293 0.00089122 -0.15168 -8.8398E-05 1.3776 0.00080283 582.7839914208001 100.95 0.1299 94.771 94.701 94.831 -6.1757 16 7 3 0 0 0 0.12841 1 67641 67641 30.225 16.319 1 67773000 25219 3322 17118 17443 29752 29752 -0.021321949910998228 IYIPTLAVL 9 Unmodified _IYIPTLAVL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.8162231445312 2 501.815336 1001.61612 1.1384 0.00057127 0.1928 9.6752E-05 1.3312 0.00066802 501.81549884764235 101.26 0.1445 95.081 95.018 95.163 -6.1757 18 8 3 0 0 0 0.016494 1 67910 67910 67.035 6.6458 1 87580000 25220 878 17119 17444 29753 29753 0.11537576147907203 IYIRWRNI 8 Unmodified _IYIRWRNI_ 0 0 0 REV__ENST00000550633.1_1_12:107466804-107486739:-|nuORF REV__ENST00000550633.1_1_12:107466804-107486739:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8353271484375 2 567.33255 1132.65055 0.74531 0.00042284 -0.88314 -0.00050104 -0.13783 -7.8198E-05 567.3315008327412 52.826 0.2223 52.763 52.603 52.826 -0.063423 17 10 2 0 0 0 0.66338 1 28645 28645 26.341 5.4701 1 1820300 + 25221 28705 17120 17445 29754 29754 0.08952837079368692 IYIRYLYKL 9 Unmodified _IYIRYLYKL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5855407714844 3 415.584903 1243.73288 0.16141 6.7079E-05 0.28217 0.00011726 0.44357 0.00018434 415.5848852184857 62.171 0.41862 62.138 61.946 62.364 -0.032787 54 15 5 0 0 0 0.042911 2 33886 33886;33996 51.63 35.064 1 74802000 25222 5855 17121 17446 29755;29756 29755 0.12076314367641316 IYIRYLYKL 9 Unmodified _IYIRYLYKL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.9201354980469 3 415.584903 1243.73288 1.3162 0.00054698 0.13131 5.4572E-05 1.4475 0.00060156 415.5848893073703 89.939 0.49944 83.763 83.488 83.988 -6.1757 82 27 4 0 0 0 0.013323 2 59266 59266;59396 63.961 49.003 1 85394000 25223 5855 17121 17446 29757;29758 29757 0.12076314367641316 IYIRYLYKL 9 Unmodified _IYIRYLYKL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.874267578125 2 622.873717 1243.73288 0.85246 0.00053098 -0.2372 -0.00014774 0.61527 0.00038323 622.873298524109 89.895 0.374 83.72 83.544 83.918 -6.1757 46 20 3 0 0 0 0.0088174 1 59399 59399 103.75 70.963 1 19860000 25224 5855 17121 17446 29759 29759 0.12076314367641316 IYISKIVVEF 10 Unmodified _IYISKIVVEF_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8583374023438 2 605.857732 1209.70091 0.87254 0.00052863 1.2764 0.00077332 2.1489 0.0013019 605.8584386800354 96.789 0.18462 90.614 90.523 90.708 -6.1757 17 10 2 0 0 0 0.036372 1 64141 64141 64.927 20.945 1 13120000 25225 4267 17122 17447 29760 29760 0.10444901893833958 IYISTLKTEF 10 Unmodified _IYISTLKTEF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2463989257812 2 607.836997 1213.65944 -0.012526 -7.6135E-06 0.58184 0.00035366 0.56932 0.00034605 607.8373569002636 63.566 0.16526 63.566 63.52 63.685 0 12 6 2 0 0 0 0.62665 2 35473 35473;35495 15.248 7.3383 1 607990 25226 1846 17123 17448 29761;29762 29761 0.061157211345062024 IYISTLKTEF 10 Unmodified _IYISTLKTEF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.83544921875 2 607.836997 1213.65944 0.59988 0.00036463 0.0063824 3.8795E-06 0.60626 0.00036851 607.8369414922371 64.077 0.40778 63.592 63.413 63.821 -0.48512 70 20 5 0 0 0 0.26936 1 34909 34909 40.239 5.3071 1 39695000 25227 1846 17123 17448 29763 29763 0.061157211345062024 IYISTLKTEF 10 Unmodified _IYISTLKTEF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.837158203125 2 607.836997 1213.65944 0.8245 0.00050116 0.23971 0.0001457 1.0642 0.00064686 607.837042843222 63.603 0.34933 63.592 63.433 63.783 -0.010532 59 16 5 0 0 0 0.084474 2 34773 34773;34878 65.474 28.967 1 44353000 25228 1846 17123 17448 29764;29765 29764 0.061157211345062024 IYISTLKTEF 10 Unmodified _IYISTLKTEF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.8358154296875 2 607.836997 1213.65944 0.81626 0.00049615 -0.12227 -7.432E-05 0.69399 0.00042183 607.8368585053234 71.916 1.0911 65.741 65.222 66.314 -6.1757 127 57 3 0 0 0 0.10874 3 47318 46988;47163;47318 59.368 19.129 1 69541000 25229 1846 17123 17448 29766;29767;29768 29768 0.061157211345062024 IYITGSSII 9 Unmodified _IYITGSSII_ 0 0 0 nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF nc|ENSG00000117410|Q99437-2|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.5501708984375 1 966.550625 965.543348 0.38631 0.00037339 -0.40183 -0.00038838 -0.015515 -1.4996E-05 966.5503705229779 71.228 0.3602 70.75 70.589 70.949 -0.47736 34 15 3 0 0 0 0.078417 2 38951 38951;39052 38.151 4.0487 1 3371300 25230 3303 17124 17449 29769;29770 29769 0.059198223544854045 IYITGSSII 9 Unmodified _IYITGSSII_ 0 0 0 nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF nc|ENSG00000117410|Q99437-2|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 966.5510864257812 1 966.550625 965.543348 1.3487 0.0013036 -0.49544 -0.00047887 0.85323 0.00082469 966.5508462146414 70.76 0.21638 70.796 70.678 70.894 0.035515 14 9 2 0 0 0 0.023164 1 38942 38942 60.39 6.814 1 1757000 25231 3303 17124 17449 29771 29771 0.059198223544854045 IYITGSSII 9 Unmodified _IYITGSSII_ 0 0 0 nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF nc|ENSG00000117410|Q99437-2|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.5504760742188 1 966.550625 965.543348 0.57948 0.0005601 -1.6715 -0.0016155 -1.092 -0.0010554 966.548417485481 78.825 0.63439 72.649 72.422 73.056 -6.1757 63 36 2 0 0 0 0.0083087 2 51716 51580;51716 97.075 19.09 1 19051000 25232 3303 17124 17449 29772;29773 29773 0.059198223544854045 IYITGSSII 9 Unmodified _IYITGSSII_ 0 0 0 nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B;ENST00000532072.1_1_1:44441705-44442052:+|nuORF;ENST00000472277.5_1_1:44440756-44442727:+|nuORF;ENST00000496131.1_1_1:44440655-44442052:+|nuORF nc|ENSG00000117410|Q99437-2|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.280029296875 2 483.778951 965.543348 0.8875 0.00042935 -0.70034 -0.00033881 0.18716 9.0546E-05 483.7793523216803 78.909 0.52452 72.733 72.531 73.056 -6.1757 51 29 2 0 0 0 0.28047 1 51769 51769 18.135 2.3668 1 7679200 25233 3303 17124 17449 29774 29774 0.059198223544854045 IYIVGGCLHEL 11 Carbamidomethyl (C) _IYIVGGC(Carbamidomethyl (C))LHEL_ IYIVGGC(1)LHEL IYIVGGC(79)LHEL 0 1 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3339233398438 2 637.334098 1272.65364 0.80692 0.00051428 -1.6623 -0.0010595 -0.8554 -0.00054517 637.3335142980136 74.355 1.2386 68.179 67.684 68.923 -6.1757 149 64 3 0 0 0 0.0029835 6 48522 48403;48522;48643;48765;48894;49029 78.728 38.778 1 24106000 25234 1470 17125 17450 29775;29776;29777;29778;29779;29780 29776 139 0.028222993512144967 IYIWDLNNF 9 Unmodified _IYIWDLNNF_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-5|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.301025390625 2 599.300581 1196.58661 4.0574 0.0024316 -0.0042285 -2.5341E-06 4.0531 0.0024291 599.3005546660639 98.905 0.19876 98.877 98.776 98.975 -0.028282 25 6 5 0 0 0 0.044011 1 54917 54917 63.563 29.46 1 40799000 25235 5085 17126 17451 29781 29781 -0.003819878682406852 IYIYFCSHF 9 Unmodified _IYIYFCSHF_ 0 0 0 REV__ENST00000302517.7_1_5:139062526-139062679:+|nuORF REV__ENST00000302517.7_1_5:139062526-139062679:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3211669921875 2 596.778428 1191.5423 0.68648 0.00040967 -2.4517 -0.0014631 -1.7652 -0.0010534 596.7767919279192 64.488 0.21416 64.002 63.867 64.081 -0.48512 14 9 2 0 0 0 0.203 1 35212 35212 9.3474 4.1168 1 859480 + 25236 25335 17127 17452 29782 29782 -0.04580715286101622 IYIYIHIYI 9 Unmodified _IYIYIHIYI_ 0 0 0 ENST00000501122.2_1_11:65204545-65204752:+|nuORF ENST00000501122.2_1_11:65204545-65204752:+|nuORF ENST00000501122.2_1_11:65204545-65204752:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.845458984375 2 605.847167 1209.67978 NaN NaN NaN NaN NaN NaN NaN 57.221 1 57.155 56.655 57.655 -0.066036 0 0 0 0.12337 1 31143 31143 36.466 0 1 25237 14444 17128 17453 29783 29783 0.08332936584997697 IYKAPSENW 9 Unmodified _IYKAPSENW_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2760620117188 2 554.277106 1106.53966 0.43247 0.00023971 -1.3081 -0.00072505 -0.87562 -0.00048534 554.2763795638996 37.547 0.18769 37.547 37.475 37.662 0 16 9 2 0 0 0 0.15471 1 20030 20030 27.629 5.8822 1 3954200 25238 4267 17129 17454 29784 29784 -0.009348474193984657 IYKAPSENW 9 Unmodified _IYKAPSENW_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.277587890625 2 554.277106 1106.53966 0.22684 0.00012573 -1.123 -0.00062246 -0.89616 -0.00049672 554.2763908682927 37.961 0.20183 37.69 37.58 37.782 -0.27133 17 9 2 0 0 0 0.0086209 1 19963 19963 89.401 25.164 1 7922500 25239 4267 17129 17454 29785 29785 -0.009348474193984657 IYKAPSENW 9 Unmodified _IYKAPSENW_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2784423828125 2 554.277106 1106.53966 1.01 0.00055981 -0.10372 -5.7487E-05 0.90627 0.00050233 554.2771331818657 42.488 0.4656 37.803 37.544 38.009 -4.6846 72 30 3 0 0 0 0.008513 2 25617 25617;25744 99.755 70.674 1 54762000 25240 4267 17129 17454 29786;29787 29786 -0.009348474193984657 IYKCVNTTL 9 Carbamidomethyl (C) _IYKC(Carbamidomethyl (C))VNTTL_ IYKC(1)VNTTL IYKC(65)VNTTL 0 1 0 ENSG00000131236|ENST00000372805|CAP1;nc|ENSG00000131236|Q01518-2|CAP1;ENST00000461993.1_1_1:40535258-40537202:+|nuORF ENSG00000131236|ENST00000372805|CAP1 ENSG00000131236|ENST00000372805|CAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2960815429688 2 556.294442 1110.57433 0.49575 0.00027578 0.73693 0.00040995 1.2327 0.00068573 556.2950563749162 39.758 0.38526 35.28 35.096 35.481 -4.4777 42 24 2 0 0 0 0.018301 2 23620 23620;23758 65.235 29.108 1 56802000 25241 4310 17130 17455 29788;29789 29788 435 0.023466523970455455 IYKDDISNSSF 11 Unmodified _IYKDDISNSSF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC ENSG00000116954|ENST00000373001|RRAGC ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.3075561523438 2 644.806425 1287.5983 0.17361 0.00011195 -0.98408 -0.00063454 -0.81047 -0.00052259 644.8054916063633 38.37 0.21336 38.37 38.263 38.476 0 32 20 2 0 0 0 0.0062377 1 20470 20470 73.196 46.928 1 7547500 25242 3269 17131 17456 29790 29790 -0.03399835635582349 IYKDDISNSSF 11 Unmodified _IYKDDISNSSF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC ENSG00000116954|ENST00000373001|RRAGC ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.8067626953125 2 644.806425 1287.5983 0.37992 0.00024497 -0.10766 -6.9422E-05 0.27226 0.00017555 644.8062278937992 44.192 0.25964 39.34 39.202 39.461 -4.852 28 18 2 0 0 0 7.5833E-15 1 26914 26914 132.13 90.295 1 14008000 25243 3269 17131 17456 29791 29791 -0.03399835635582349 IYKDLAQVGM 10 Unmodified _IYKDLAQVGM_ 0 0 0 REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|52|1|anti-sense REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|52|1|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5513000488281 3 379.870603 1136.58998 0.39114 0.00014858 2.8054 0.0010657 3.1966 0.0012143 379.8716967757444 49.006 0.28167 48.634 48.539 48.82 -0.37172 19 13 2 0 0 0 0.23057 1 26413 26413 7.9454 0.46833 1 914190 + 25244 30113 17132 17457 29792 29792 0.027149389141186475 IYKDLPFETL 10 Unmodified _IYKDLPFETL_ 0 0 0 ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39 ENSG00000154719|ENST00000352957|MRPL39 ENSG00000154719|ENST00000352957|MRPL39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8375244140625 2 619.836997 1237.65944 0.54412 0.00033727 1.4278 0.00088498 1.9719 0.0012222 619.8377853731869 71.471 0.3299 70.994 70.816 71.146 -0.47735 30 13 3 0 0 0 0.052718 1 39090 39090 57.249 19.275 1 2773400 25245 6345 17133 17458 29793 29793 0.050117211345195756 IYKDLPFETL 10 Unmodified _IYKDLPFETL_ 0 0 0 ENSG00000154719|ENST00000352957|MRPL39;nc|ENSG00000154719|Q9NYK5-2|MRPL39 ENSG00000154719|ENST00000352957|MRPL39 ENSG00000154719|ENST00000352957|MRPL39 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 619.836997 1237.65944 -0.032266 -2E-05 2.957 0.0018329 2.9248 0.0018129 619.8382661163633 71.029 0.13609 71.029 70.954 71.09 0 0.017848 0.001676 NaN 57.249 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 361680 25246 6345 17133 17458 0.050117211345195756 IYKDSSTFL 9 Unmodified _IYKDSSTFL_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2781982421875 2 537.279315 1072.54408 0.020401 1.0961E-05 0.19723 0.00010597 0.21763 0.00011693 537.2794399770089 45.317 0.27865 45.317 45.15 45.429 0 35 14 3 0 0 0 0.040683 2 24640 24640;24747 49.554 17.249 1 47919000 25247 5692 17134 17459 29794;29795 29794 0.010706170035291507 IYKDSSTFL 9 Unmodified _IYKDSSTFL_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2794799804688 2 537.279315 1072.54408 -0.075985 -4.0825E-05 -0.1848 -9.9288E-05 -0.26078 -0.00014011 537.2792249560752 45.529 0.29132 45.205 45.046 45.337 -0.32425 42 16 3 0 0 0 0.017075 2 24266 24266;24373 66.457 17.529 1 78775000 25248 5692 17134 17459 29796;29797 29796 0.010706170035291507 IYKDSSTFL 9 Unmodified _IYKDSSTFL_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2791137695312 2 537.279315 1072.54408 0.011089 5.9579E-06 0.13466 7.2352E-05 0.14575 7.831E-05 537.279533771592 45.221 0.15535 45.193 45.107 45.263 -0.028011 14 8 2 0 0 0 0.013609 1 24289 24289 70.332 24.311 1 10654000 25249 5692 17134 17459 29798 29798 0.010706170035291507 IYKDSSTFL 9 Unmodified _IYKDSSTFL_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2799072265625 2 537.279315 1072.54408 0.93479 0.00050224 -0.062417 -3.3535E-05 0.87237 0.00046871 537.2792286353088 50.913 0.53176 45.264 45.026 45.558 -5.649 97 32 4 0 0 0 0.029718 3 31877 31877;32000;32136 55.503 17.529 1 282170000 25250 5692 17134 17459 29799;29800;29801 29799 0.010706170035291507 IYKDVSENG 9 Unmodified _IYKDVSENG_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2788696289062 2 512.750921 1023.48729 1.0311 0.0005287 1.6049 0.00082289 2.636 0.0013516 513.2516640079641 89.537 0.091118 83.361 83.327 83.418 -6.1757 7 4 2 0 0 0 0.12183 1 59084 59084 34.102 10.954 1 4528600 25251 6095 17135 17460 29802 29802 -0.023514305529943158 IYKEEREYF 9 Unmodified _IYKEEREYF_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8143920898438 2 638.814053 1275.61355 -0.79731 -0.00050933 2.1959 0.0014028 1.3986 0.00089342 638.8146496169592 32.033 0.22432 32.033 31.94 32.164 0 25 10 3 0 0 0 0.12357 1 16704 16704 39.95 20.693 1 2253400 25252 6885 17136 17461 29803 29803 -0.013229240477357962 IYKEEREYF 9 Unmodified _IYKEEREYF_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2122192382812 3 426.211794 1275.61355 0.0066542 2.8361E-06 0.58875 0.00025093 0.59541 0.00025377 426.2120550087639 31.985 0.31766 31.856 31.623 31.94 -0.12915 23 12 3 0 0 0 0.21589 1 16633 16633 21.59 14.488 1 3149100 25253 6885 17136 17461 29804 29804 -0.013229240477357962 IYKEEREYF 9 Unmodified _IYKEEREYF_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2123718261719 3 426.211794 1275.61355 1.1353 0.0004839 -0.30502 -0.00013 0.83032 0.00035389 426.211776820815 35.609 0.4891 31.416 31.252 31.741 -4.1928 93 30 4 0 0 0 0.053952 2 20772 20634;20772 43.982 29.025 1 54600000 25254 6885 17136 17461 29805;29806 29806 -0.013229240477357962 IYKEEREYF 9 Unmodified _IYKEEREYF_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8143310546875 2 638.814053 1275.61355 0.77698 0.00049634 -1.2455 -0.00079563 -0.46851 -0.00029929 638.8139788438946 35.654 0.29475 31.461 31.318 31.613 -4.1928 39 18 3 0 0 0 0.016848 1 20695 20695 71.708 35.581 1 11817000 25255 6885 17136 17461 29807 29807 -0.013229240477357962 IYKEVMDWE 9 Unmodified _IYKEVMDWE_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8590698242188 3 404.858363 1211.55326 0.74722 0.00030252 0.63131 0.00025559 1.3785 0.00055811 404.85873774211274 74.837 0.26492 74.361 74.231 74.496 -0.47588 17 10 2 0 0 0 0.58865 1 40969 40969 1.0715 0.44464 1 739340 25256 727 17137 17462 29808 29808 -0.04405357702466972 IYKEVMDWE 9 Unmodified _IYKEVMDWE_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8590087890625 3 404.858363 1211.55326 0.074019 2.9967E-05 1.7617 0.00071322 1.8357 0.00074319 404.8591589438952 74.333 0.29692 74.377 74.182 74.479 0.043976 19 12 2 0 0 0 0.55144 1 41002 41002 2.4985 1.3887 1 2781000 25257 727 17137 17462 29809 29809 -0.04405357702466972 IYKEVMDWE 9 Unmodified _IYKEVMDWE_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 404.858363 1211.55326 0.74722 0.00030252 0.63131 0.00025559 1.3785 0.00055811 404.85873774211274 74.837 0.26492 74.361 74.231 74.496 -0.47588 -0.0079153 -0.00072077 NaN 2.4985 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 739340 25258 727 17137 17462 -0.04405357702466972 IYKFLLEHF 9 Unmodified _IYKFLLEHF_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.893798828125 3 403.893737 1208.65938 0.17862 7.2143E-05 0.91219 0.00036843 1.0908 0.00044057 403.8938339083262 67.999 0.18826 68.024 67.9 68.088 0.025146 18 8 3 0 0 0 0.12841 1 37359 37359 27.629 23.1 1 2777900 25259 6122 17138 17463 29810 29810 0.0633976592516774 IYKFLLEHF 9 Unmodified _IYKFLLEHF_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8931884765625 3 403.893737 1208.65938 1.0821 0.00043707 0.30696 0.00012398 1.3891 0.00056105 403.893718059292 94.861 0.27716 88.685 88.509 88.787 -6.1757 21 15 2 0 0 0 0.022193 1 62832 62832 55.503 50.974 1 8020500 25260 6122 17138 17463 29811 29811 0.0633976592516774 IYKFLTPYL 9 Unmodified _IYKFLTPYL_ 0 0 0 ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3342895507812 2 579.333893 1156.65323 0.67237 0.00038952 -0.75041 -0.00043474 -0.078045 -4.5214E-05 579.3338586161137 79.215 0.26177 79.27 79.13 79.391 0.05497 20 9 3 0 0 0 0.047714 1 43774 43774 49.933 31.798 1 7448100 25261 9855 17139 17464 29812 29812 0.08117247693667196 IYKFLTPYL 9 Unmodified _IYKFLTPYL_ 0 0 0 ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3356323242188 2 579.333893 1156.65323 1.3307 0.00077095 -1.2285 -0.00071171 0.10225 5.9237E-05 579.3334445128896 97.209 0.27784 91.033 90.877 91.155 -6.1757 38 15 3 0 0 0 0.016448 1 64379 64379 72.968 29.11 1 43574000 25262 9855 17139 17464 29813 29813 0.08117247693667196 IYKFSHCSF 9 Carbamidomethyl (C) _IYKFSHC(Carbamidomethyl (C))SF_ IYKFSHC(1)SF IYKFSHC(93)SF 0 1 0 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7799072265625 2 594.778959 1187.54336 0.37826 0.00022498 0.28035 0.00016674 0.65861 0.00039173 594.7792199104532 41.145 0.3018 36.537 36.401 36.703 -4.6079 40 18 3 0 0 0 0.0082475 1 24683 24683 92.653 56.609 1 16413000 25263 4381 17140 17465 29814 29814 445 -0.042905009171818165 IYKFSHCSF 9 Carbamidomethyl (C) _IYKFSHC(Carbamidomethyl (C))SF_ IYKFSHC(1)SF IYKFSHC(58)SF 0 1 0 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8558959960938 3 396.855065 1187.54336 0.86204 0.00034211 -0.01284 -5.0956E-06 0.8492 0.00033701 396.85525723963457 41.187 0.50991 36.579 36.244 36.754 -4.6079 84 31 4 0 0 0 0.025842 1 24705 24705 57.722 39.576 1 76122000 25264 4381 17140 17465 29815 29815 445 -0.042905009171818165 IYKFSHCSF 9 Carbamidomethyl (C) _IYKFSHC(Carbamidomethyl (C))SF_ 0 1 0 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 396.855065 1187.54336 -0.39303 -0.00015597 0.9486 0.00037646 0.55557 0.00022048 396.8555424131571 36.887 0.19574 36.908 36.767 36.963 0.021545 0.16464 0.00086623 NaN 57.722 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1352500 25265 4381 17140 17465 445 -0.042905009171818165 IYKGIPLQL 9 Unmodified _IYKGIPLQL_ 0 0 0 ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL ENSG00000148429|ENST00000609104|USP6NL ENSG00000148429|ENST00000609104|USP6NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8261108398438 2 522.826235 1043.63792 0.21105 0.00011034 -0.30616 -0.00016007 -0.095107 -4.9724E-05 522.8258633070178 67.66 0.7262 67.678 67.123 67.849 0.018028 77 36 4 0 0 0 0.0090948 2 37129 37129;37236 85.272 51.17 1 74107000 25266 5933 17141 17466 29816;29817 29816 0.11784380896460789 IYKGIPLQL 9 Unmodified _IYKGIPLQL_ 0 0 0 ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL ENSG00000148429|ENST00000609104|USP6NL ENSG00000148429|ENST00000609104|USP6NL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2615966796875 2 522.826235 1043.63792 0.80431 0.00042052 -0.94087 -0.00049191 -0.13655 -7.1394E-05 522.8255294090178 78.17 0.86905 71.994 71.273 72.142 -6.1757 77 49 2 0 0 0 0.16418 1 51186 51186 25.399 14.575 1 15166000 25267 5933 17141 17466 29818 29818 0.11784380896460789 IYKGIPLQL 9 Unmodified _IYKGIPLQL_ 0 0 0 ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL ENSG00000148429|ENST00000609104|USP6NL ENSG00000148429|ENST00000609104|USP6NL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.826235 1043.63792 0.49805 0.00026039 -1.2337 -0.00064503 -0.73569 -0.00038464 522.8254802024146 68.147 0.20744 67.665 67.575 67.783 -0.48218 -0.0063464 -0.00086275 NaN 85.272 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1965700 25268 5933 17141 17466 0.11784380896460789 IYKHFSATL 9 Unmodified _IYKHFSATL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5344848632812 3 360.53432 1078.58113 -0.023873 -8.6072E-06 0.098203 3.5405E-05 0.074329 2.6798E-05 360.53434248745873 34.744 0.31906 34.771 34.628 34.947 0.027401 41 14 4 0 0 0 0.07916 1 18312 18312 41.956 3.78 1 25861000 25269 5855 17142 17467 29819 29819 0.04498333339961391 IYKHFSATL 9 Unmodified _IYKHFSATL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2975463867188 2 540.297842 1078.58113 0.05939 3.2088E-05 -0.14819 -8.0068E-05 -0.088801 -4.7979E-05 540.2976837085904 34.733 0.23491 34.761 34.668 34.903 0.027401 26 10 3 0 0 0 0.0082475 1 18320 18320 92.653 42.72 1 7462700 25270 5855 17142 17467 29820 29820 0.04498333339961391 IYKHFSATL 9 Unmodified _IYKHFSATL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.298095703125 2 540.297842 1078.58113 0.69609 0.0003761 -0.11582 -6.2578E-05 0.58027 0.00031352 540.2976722739899 39.097 0.39751 34.646 34.399 34.796 -4.4509 54 25 3 0 0 0 0.0090524 2 23049 23049;23187 85.642 31.809 1 36705000 25271 5855 17142 17467 29821;29822 29821 0.04498333339961391 IYKHFSATL 9 Unmodified _IYKHFSATL_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.297842 1078.58113 -0.48298 -0.00026095 0.68678 0.00037107 0.2038 0.00011011 540.2983395008714 35.018 0.16125 34.796 34.691 34.852 -0.2224 0.061594 0.00066957 NaN 92.653 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 985140 25272 5855 17142 17467 0.04498333339961391 IYKIDFVRF 9 Unmodified _IYKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8982849121094 3 400.89737 1199.67028 0.38619 0.00015482 0.28047 0.00011244 0.66665 0.00026726 400.89746095948357 67.094 0.4232 67.112 66.895 67.318 0.018028 77 20 5 0 0 0 0.14859 2 36760 36760;36870 28.234 20.625 1 148340000 25273 2630 17143 17468 29823;29824 29823 0.07843168299450554 IYKIDFVRF 9 Unmodified _IYKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8428344726562 2 600.842416 1199.67028 0.43538 0.0002616 -0.32948 -0.00019796 0.10591 6.3633E-05 600.8421798656308 67.086 0.25667 67.104 66.961 67.218 0.018036 34 12 3 0 0 0 0.022461 1 36802 36802 66.457 32.354 1 5777200 25274 2630 17143 17468 29825 29825 0.07843168299450554 IYKIDFVRF 9 Unmodified _IYKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8976135253906 3 400.89737 1199.67028 0.99417 0.00039856 0.077148 3.0928E-05 1.0713 0.00042949 400.89733339832196 90.427 0.50082 84.251 83.988 84.489 -6.1757 90 29 5 0 0 0 0.094905 2 59627 59627;59755 34.222 22.727 1 211720000 25275 2630 17143 17468 29826;29827 29826 0.07843168299450554 IYKIDFVRF 9 Unmodified _IYKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.840576171875 2 600.842416 1199.67028 0.20735 0.00012459 -0.14187 -8.5241E-05 0.065483 3.9345E-05 600.8422024661025 90.445 0.35276 84.269 84.074 84.427 -6.1757 46 20 3 0 0 0 0.01861 2 59682 59682;59815 79.596 45.494 1 38279000 25276 2630 17143 17468 29828;29829 29828 0.07843168299450554 IYKIDGIGTV 10 Unmodified _IYKIDGIGTV_ 0 0 0 ENST00000547505.2_1_12:44054116-44054311:+|nuORF ENST00000547505.2_1_12:44054116-44054311:+|nuORF ENST00000547505.2_1_12:44054116-44054311:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8108520507812 2 539.810782 1077.60701 0.83287 0.00044959 -2.1422 -0.0011564 -1.3093 -0.00070677 539.8105856156257 63.527 0.64248 57.352 57.094 57.737 -6.1757 91 36 4 0 0 0 0.29752 1 40990 40990 27.629 3.6082 1 46077000 25277 15123 17144 17469 29830 29830 0.0713118279156788 IYKKYPNMF 9 Unmodified _IYKKYPNMF_ 0 0 0 nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;ENST00000492628.1_1_7:129040195-129045055:+|nuORF nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2128295898438 3 401.87921 1202.6158 0.89651 0.00036029 -1.0268 -0.00041266 -0.13032 -5.2374E-05 402.21279611440474 42.088 0.60039 37.403 37.109 37.709 -4.6846 73 37 3 0 0 0 0.54213 1 25313 25313 4.897 0.70751 1 20399000 25278 6587 17145 17470 29831 29831 0.02259833156381319 IYKLDQHKGAV 11 Unmodified _IYKLDQHKGAV_ 0 0 0 REV__nc|ENSG00000164045|P30304-2|CDC25A REV__nc|ENSG00000164045|P30304-2|CDC25A MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5755004882812 3 424.575067 1270.70337 0.42016 0.00017839 -2.101 -0.00089201 -1.6808 -0.00071362 424.5743366105367 23.729 0.36448 20.902 20.708 21.073 -2.8273 35 22 2 0 0 0 0.58219 1 12919 12919 6.6235 0.3891 1 6574800 + 25279 21854 17146 17471 29832 29832 0.07884750351490766 IYKNLPNGY 9 Unmodified _IYKNLPNGY_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1942749023438 3 361.194075 1080.5604 -0.50896 -0.00018383 0.19185 6.9294E-05 -0.31711 -0.00011454 361.1939351209447 29.732 0.20903 29.732 29.624 29.833 0 33 12 4 0 0 0 0.4887 1 15402 15402 8.1555 0.8663 1 63416000 + 25280 20275 17147 17472 29833 29833 0.023337429602861448 IYKNLPNGY 9 Unmodified _IYKNLPNGY_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1943054199219 3 361.194075 1080.5604 1.8423 0.00066542 0.28339 0.00010236 2.1257 0.00076778 361.19394989156035 33.581 0.72302 29.596 29.299 30.022 -3.9853 140 40 4 0 0 0 0.21643 3 19143 19143;19262;19380 21.537 7.6309 1 432770000 + 25281 20275 17147 17472 29834;29835;29836 29834 0.023337429602861448 IYKNLPNGY 9 Unmodified _IYKNLPNGY_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.194075 1080.5604 -0.50896 -0.00018383 0.19185 6.9294E-05 -0.31711 -0.00011454 361.1939351209447 29.732 0.20903 29.732 29.624 29.833 0 0.07541 1.044E-05 NaN 21.537 33 12 4 NaN NaN NaN NaN 0 NaN NaN 0 63416000 + 25282 20275 17147 17472 0.023337429602861448 IYKNLPNGY 9 Unmodified _IYKNLPNGY_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10 REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 361.194075 1080.5604 0.62533 0.00022586 -0.11632 -4.2015E-05 0.509 0.00018385 361.19411204105216 29.723 0.18968 29.642 29.501 29.691 -0.080429 -0.014724 -0.00032349 NaN 21.537 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 14802000 + 25283 20275 17147 17472 0.023337429602861448 IYKNTPENL 9 Unmodified _IYKNTPENL_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2891235351562 2 546.290214 1090.56587 -0.29833 -0.00016298 1.6667 0.00091049 1.3684 0.00074752 546.2912795064349 28.944 0.14093 28.944 28.861 29.002 0 12 6 2 0 0 0 0.091924 1 14967 14967 34.932 9.9411 1 1231500 25284 5865 17148 17473 29837 29837 0.02421421752092101 IYKNYYRYYGR 11 Unmodified _IYKNYYRYYGR_ 0 0 0 REV__nc|ENSG00000241468|P56134-2|ATP5MF REV__nc|ENSG00000241468|P56134-2|ATP5MF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 780.3953247070312 2 779.8937 1557.77285 -0.0070116 -5.4683E-06 -0.16827 -0.00013123 -0.17528 -0.0001367 779.8936215888771 82.989 0.30641 82.989 82.811 83.117 0 48 16 4 0 0 0 0.74203 1 45990 45990 0.30703 0 1 2959500 + 25285 24450 17149 17474 29838 29838 0.016272093002498877 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.3005981445312 2 565.30005 1128.58555 0.7334 0.00041459 0.47154 0.00026656 1.2049 0.00068116 565.2999264778671 68.174 0.28441 67.692 67.615 67.899 -0.48218 32 12 3 0 0 0 0.06294 1 37248 37248 41.84 11.203 1 4394100 25286 5017;13903 17150 17475 29839 29839 0.026397977628448643 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3010864257812 2 565.30005 1128.58555 0.58881 0.00033286 1.344 0.00075977 1.9328 0.0010926 565.3003347033812 67.66 0.42319 67.678 67.553 67.976 0.018028 52 20 3 0 0 0 0.023481 3 37222 37103;37121;37222 60.074 23.947 1 36343000 25287 5017;13903 17150 17475 29840;29841;29842 29842 0.026397977628448643 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2992553710938 2 565.30005 1128.58555 1.0165 0.00057464 0.061156 3.4572E-05 1.0777 0.00060921 565.3001262221815 80.306 0.93845 74.13 73.612 74.551 -6.1757 108 54 3 0 0 0 0.028475 4 52735 52476;52605;52735;52875 56.177 23.872 1 23908000 25288 5017;13903 17150 17475 29843;29844;29845;29846 29845 0.026397977628448643 IYKPVTDFF 9 Unmodified _IYKPVTDFF_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC MSMS AL20221201_MKP_PDAC_01 4 565.3008422851562 2 565.30005 1128.58555 NaN NaN NaN NaN NaN NaN NaN 79.659 1 73.483 72.983 73.983 -6.1757 0 0 0 0.083082 1 52217 52217 47.749 5.6541 1 25289 5017;13903 17150 17475 29847 29847 0.026397977628448643 IYKPVTDFFL 10 Unmodified _IYKPVTDFFL_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC;ENST00000463456.5_1_2:44115741-44128754:-|nuORF;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8421020507812 2 621.842082 1241.66961 1.3121 0.0008159 0.054551 3.3922E-05 1.3666 0.00084982 621.8419326469823 98.215 0.1512 92.039 91.968 92.12 -6.1757 17 9 2 0 0 0 0.23548 1 65133 65133 31.268 13.122 1 31002000 25290 5017;13903 17151 17476 29848 29848 0.05844328859757297 IYKQDLPAL 9 Unmodified _IYKQDLPAL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.8065185546875 2 530.8055 1059.59645 0.40617 0.0002156 0.67687 0.00035929 1.083 0.00057488 531.3071767290705 50.469 0.29229 50.469 50.35 50.643 0 21 13 2 0 0 0 0.25681 1 27892 27892 19.257 6.2145 1 2327400 25291 8008 17152 17477 29849 29849 0.06903200137116983 IYKQDLPAL 9 Unmodified _IYKQDLPAL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8062744140625 2 530.8055 1059.59645 0.33964 0.00018028 0.42897 0.0002277 0.7686 0.00040798 530.8056559535881 50.963 0.36064 50.549 50.358 50.718 -0.41351 42 17 3 0 0 0 0.013041 2 27406 27406;27506 71.922 28.064 1 5207000 25292 8008 17152 17477 29850;29851 29850 0.06903200137116983 IYKQDLPAL 9 Unmodified _IYKQDLPAL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.805908203125 2 530.8055 1059.59645 0.75659 0.0004016 -0.40211 -0.00021344 0.35448 0.00018816 530.8053379884077 56.492 0.38141 50.515 50.338 50.719 -5.9769 40 21 3 0 0 0 0.0086904 2 36019 36019;36156 107.19 39.106 1 33306000 25293 8008 17152 17477 29852;29853 29852 0.06903200137116983 IYKQDLPAL 9 Unmodified _IYKQDLPAL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.8055 1059.59645 0.89601 0.0004756 -0.036652 -1.9455E-05 0.85935 0.00045615 530.8052851661133 50.607 0.21989 50.553 50.408 50.628 -0.053871 0.031192 -0.00015052 NaN 107.19 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 830460 25294 8008 17152 17477 0.06903200137116983 IYKQDLPSL 9 Unmodified _IYKQDLPSL_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.80224609375 2 538.802957 1075.59136 0.5932 0.00031962 0.74333 0.00040051 1.3365 0.00072013 538.803051134982 49.395 0.25906 49.395 49.277 49.536 0 37 11 4 0 0 0 0.0094097 1 27154 27154 82.529 17.294 1 11003000 25295 3530 17153 17478 29854 29854 0.05658896274530889 IYKQDLPSL 9 Unmodified _IYKQDLPSL_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.802978515625 2 538.802957 1075.59136 0.66903 0.00036048 0.17127 9.2282E-05 0.8403 0.00045276 538.8029759219522 49.772 0.43325 49.38 49.098 49.532 -0.3923 71 21 5 0 0 0 0.0082353 2 26826 26711;26826 96.111 10.526 1 58956000 25296 3530 17153 17478 29855;29856 29856 0.05658896274530889 IYKQDLPSL 9 Unmodified _IYKQDLPSL_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3046875 2 538.802957 1075.59136 0.64471 0.00034737 -0.49721 -0.0002679 0.14751 7.9478E-05 538.8027264022926 49.42 0.28131 49.373 49.192 49.474 -0.046307 38 13 4 0 0 0 0.020973 1 26668 26668 62.573 10.304 1 4904700 25297 3530 17153 17478 29857 29857 0.05658896274530889 IYKQDLPSL 9 Unmodified _IYKQDLPSL_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.803955078125 2 538.802957 1075.59136 1.0254 0.00055249 0.91988 0.00049564 1.9453 0.0010481 538.8033648462532 55.384 0.52955 49.463 49.208 49.737 -5.9211 84 32 4 0 0 0 0.017075 1 35295 35295 66.457 10.28 1 198090000 25298 3530 17153 17478 29858 29858 0.05658896274530889 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(66)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7938232421875 2 587.794275 1173.574 -0.21742 -0.0001278 -0.13545 -7.9618E-05 -0.35287 -0.00020741 587.7940568569629 41.868 0.26513 41.868 41.709 41.975 0 34 13 3 0 0 0 0.017075 1 22608 22608 66.457 32.055 1 8729500 25299 4060 17154 17479 29859 29859 727 -0.005847673228117856 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(69)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.794189453125 2 587.794275 1173.574 -0.38734 -0.00022767 0.073884 4.3429E-05 -0.31345 -0.00018425 587.7944446132675 41.749 0.26629 41.442 41.308 41.574 -0.30682 40 12 4 0 0 0 0.014417 1 22106 22106 69.105 32.978 1 90903000 25300 4060 17154 17479 29860 29860 727 -0.005847673228117856 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(66)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7947998046875 2 587.794275 1173.574 -0.16137 -9.4852E-05 -0.54713 -0.0003216 -0.7085 -0.00041645 587.794134595989 42.179 0.27952 41.872 41.72 42 -0.30682 35 13 4 0 0 0 0.017075 1 22343 22343 66.457 32.055 1 100560000 25301 4060 17154 17479 29861 29861 727 -0.005847673228117856 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(83)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.79296875 2 587.794275 1173.574 0.0045703 2.6864E-06 -0.80723 -0.00047449 -0.80266 -0.0004718 587.7939598217393 41.459 0.31916 41.457 41.298 41.618 -0.0017929 42 14 4 0 0 0 0.0094097 1 22136 22136 82.529 26.352 1 38267000 25302 4060 17154 17479 29862 29862 727 -0.005847673228117856 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(72)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7945556640625 2 587.794275 1173.574 0.011106 6.5281E-06 -0.37195 -0.00021863 -0.36085 -0.0002121 587.7940806115383 41.893 0.28757 41.884 41.736 42.023 -0.0088196 40 13 4 0 0 0 0.013041 1 22381 22381 71.922 33.948 1 44836000 25303 4060 17154 17479 29863 29863 727 -0.005847673228117856 IYKSIMEQF 9 Oxidation (M) _IYKSIM(Oxidation (M))EQF_ IYKSIM(1)EQF IYKSIM(63)EQF 0 0 1 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7940673828125 2 587.794275 1173.574 0.81848 0.0004811 -0.8485 -0.00049874 -0.030018 -1.7644E-05 587.7938579720161 47.201 0.6303 42.121 41.894 42.524 -5.0805 103 43 3 0 0 0 0.020973 2 29282 29151;29282 62.573 24.599 1 80895000 25304 4060 17154 17479 29864;29865 29865 727 -0.005847673228117856 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7974243164062 2 579.796817 1157.57908 0.5294 0.00030694 -0.19463 -0.00011284 0.33477 0.0001941 579.7967172205681 57.255 0.32226 56.765 56.6 56.923 -0.48974 39 14 4 0 0 0 0.0094097 2 31076 31076;31173 82.529 44.354 1 9819800 25305 4060 17154 17480 29866;29867 29866 0.006595365398197828 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7971801757812 2 579.796817 1157.57908 1.0621 0.0006158 -0.57876 -0.00033556 0.48333 0.00028024 579.7965637549618 56.921 0.31705 56.852 56.678 56.995 -0.068741 48 15 4 0 0 0 0.020973 2 30917 30917;31017 62.573 28.47 1 28109000 25306 4060 17154 17480 29868;29869 29868 0.006595365398197828 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7976684570312 2 579.796817 1157.57908 2.0751 0.0012031 -0.63267 -0.00036682 1.4424 0.0008363 579.7966513069487 62.726 1.0879 56.55 56.174 57.262 -6.1757 163 57 6 0 0 0 0.0089732 2 40550 40422;40550 86.332 42.559 1 322950000 25307 4060 17154 17480 29870;29871 29871 0.006595365398197828 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7974243164062 2 579.796817 1157.57908 1.4371 0.0008332 0.71259 0.00041316 2.1497 0.0012464 579.7970293626506 64.273 0.66821 58.098 57.782 58.45 -6.1757 58 35 2 0 0 0 0.015688 3 41847 41565;41703;41847 67.838 29.663 1 29357000 25308 4060 17154 17480 29872;29873;29874 29874 0.006595365398197828 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7976684570312 2 579.796817 1157.57908 0.31078 0.00018019 1.2111 0.00070219 1.5219 0.00088238 579.7974410322984 65.774 0.8082 59.599 59.11 59.918 -6.1757 73 46 2 0 0 0 0.12424 1 42518 42518 30.637 10.183 1 23603000 25309 4060 17154 17480 29875 29875 0.006595365398197828 IYKSIMEQF 9 Unmodified _IYKSIMEQF_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS AL20221201_MKP_PDAC_01 4 579.7996826171875 2 579.796817 1157.57908 NaN NaN NaN NaN NaN NaN NaN 64.773 1 58.598 58.098 59.098 -6.1757 0 0 0 0.010041 1 41994 41994 92.653 42.72 1 25310 4060 17154 17480 29876 29876 0.006595365398197828 IYKTHLENNRF 11 Unmodified _IYKTHLENNRF_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENSG00000175166|ENST00000310118|PSMD2;ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENSG00000175166|ENST00000310118|PSMD2 MSMS AL20221201_MKP_PDAC_01 4 478.9214172363281 3 478.921126 1433.74155 NaN NaN NaN NaN NaN NaN NaN 28.434 1 25.286 24.786 25.786 -3.1482 0 0 0 0.83212 1 15863 15863 10.527 1.2837 1 25311 8488;13532 17155 17481 29877 29877 0.04202636266177251 IYKTIAHFL 9 Unmodified _IYKTIAHFL_ 0 0 0 ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2194213867188 3 369.218332 1104.63317 0.69596 0.00025696 0.07895 2.915E-05 0.77491 0.00028611 369.2183123430253 52.637 0.27979 52.578 52.407 52.687 -0.058918 34 13 3 0 0 0 0.094149 1 28494 28494 34.402 18.555 1 7727700 25312 8485 17156 17482 29878 29878 0.08503496753723994 IYKTLVERSTL 11 Unmodified _IYKTLVERSTL_ 0 0 0 nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.8902587890625 2 661.887552 1321.76055 NaN NaN NaN NaN NaN NaN NaN 80.041 1 80.099 79.599 80.599 0.057587 0 0 0 0.75116 1 44233 44233 14.405 1.3629 1 25313 1515 17157 17483 29879 29879 0.11254172837243459 IYKTSILVF 9 Unmodified _IYKTSILVF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3257446289062 2 542.326068 1082.63758 0.44068 0.00023899 -0.38273 -0.00020756 0.057954 3.143E-05 542.3257059534054 71.926 0.33952 71.965 71.809 72.149 0.039024 51 16 4 0 0 0 0.032796 2 39568 39568;39667 53.833 31.097 1 20834000 25314 3817 17158 17484 29880;29881 29880 0.09956961176635559 IYKTSILVF 9 Unmodified _IYKTSILVF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3263549804688 2 542.326068 1082.63758 1.0173 0.00055171 -0.41717 -0.00022624 0.60014 0.00032547 542.3265031811966 89.544 1.0008 83.368 82.882 83.883 -6.1757 79 55 2 0 0 0 0.025842 2 59173 59047;59173 57.722 26.949 1 14396000 25315 3817 17158 17484 29882;29883 29883 0.09956961176635559 IYKWIKDNI 9 Unmodified _IYKWIKDNI_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2306518554688 3 398.229008 1191.66519 0.74691 0.00029744 0.10005 3.9843E-05 0.84696 0.00033728 398.2290619221949 46.346 0.22782 46.312 46.203 46.431 -0.033417 23 10 3 0 0 0 0.29507 1 24953 24953 17.443 6.6431 1 3598200 25316 2711 17159 17485 29884 29884 0.07702864436851087 IYKWITDNF 9 Unmodified _IYKWITDNF_ 0 0 0 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3085327148438 2 600.308406 1198.60226 0.31057 0.00018644 0.47377 0.00028441 0.78434 0.00047085 600.3086165004476 67.259 0.41032 67.277 67.064 67.474 0.018028 66 20 4 0 0 0 0.024507 2 36860 36860;36960 72.968 52.514 1 47646000 25317 4156 17160 17486 29885;29886 29885 0.010902986487963062 IYKWITDNF 9 Unmodified _IYKWITDNF_ 0 0 0 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3080444335938 2 600.308406 1198.60226 0.019792 1.1881E-05 0.1174 7.0474E-05 0.13719 8.2355E-05 600.3084373695372 81.858 1.6307 75.682 75.116 76.747 -6.1757 265 92 4 0 0 0 0.0069133 8 53569 53449;53569;53694;53826;53961;54093;54228;54360 132.38 86.68 1 81806000 25318 4156 17160 17486 29887;29888;29889;29890;29891;29892;29893;29894 29888 0.010902986487963062 IYLAPGDYHCF 11 Carbamidomethyl (C) _IYLAPGDYHC(Carbamidomethyl (C))F_ IYLAPGDYHC(1)F IYLAPGDYHC(68)F 0 1 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD;ENST00000473770.5_1_22:32015600-32017204:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.3092041015625 2 678.308081 1354.60161 0.80757 0.00054778 0.19747 0.00013395 1.005 0.00068173 678.308097586004 66.35 0.30267 60.174 59.977 60.28 -6.1757 24 16 2 0 0 0 0.0097967 1 43142 43142 68.081 50.968 1 9669500 25319 16571 17161 17487 29895 29895 1028 -0.061508640625561384 IYLAPGDYHCF 11 Carbamidomethyl (C) _IYLAPGDYHC(Carbamidomethyl (C))F_ IYLAPGDYHC(1)F IYLAPGDYHC(75)F 0 1 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENSG00000241878|ENST00000439502|PISD;ENST00000473770.5_1_22:32015600-32017204:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.309814453125 2 678.308081 1354.60161 0.59601 0.00040428 -0.010672 -7.2391E-06 0.58534 0.00039704 678.3079337526503 66.694 0.42004 60.518 60.261 60.681 -6.1757 40 23 2 0 0 0 0.0052184 1 43351 43351 74.929 57.816 1 18166000 25320 16571 17161 17487 29896 29896 1028 -0.061508640625561384 IYLASKNLI 9 Unmodified _IYLASKNLI_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8160400390625 2 517.815867 1033.61718 -0.26678 -0.00013814 -0.38017 -0.00019686 -0.64695 -0.000335 517.8158294223152 56.228 0.28704 56.16 56 56.287 -0.068737 31 14 3 0 0 0 0.011671 1 30571 30571 75.761 31.354 1 6660500 25321 944;3759 17162 17488 29897 29897 0.10171790516801593 IYLASKNLI 9 Unmodified _IYLASKNLI_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.816162109375 2 517.815867 1033.61718 0.38121 0.0001974 -0.084075 -4.3536E-05 0.29713 0.00015386 517.8159811004856 62.13 0.33181 55.955 55.741 56.073 -6.1757 28 18 2 0 0 0 0.0082353 1 40054 40054 96.111 34.753 1 21283000 25322 944;3759 17162 17488 29898 29898 0.10171790516801593 IYLDDLPSL 9 Unmodified _IYLDDLPSL_ 0 0 0 ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2821655273438 2 524.78169 1047.54883 0.37447 0.00019652 0.11854 6.2207E-05 0.49301 0.00025872 524.7819584278237 87.37 0.28434 86.865 86.708 86.992 -0.50423 23 11 3 0 0 0 0.32235 1 47778 47778 23.148 7.3012 1 738960 25323 4451 17163 17489 29899 29899 0.02695501146308743 IYLDDLPSL 9 Unmodified _IYLDDLPSL_ 0 0 0 ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7825317382812 2 524.78169 1047.54883 1.3802 0.00072429 2.5763 0.001352 3.9564 0.0020763 524.7826863250185 96.721 0.28883 90.546 90.404 90.693 -6.1757 21 16 2 0 0 0 0.078314 1 64087 64087 50.855 16.753 1 10167000 25324 4451 17163 17489 29900 29900 0.02695501146308743 IYLDDLPSL 9 Unmodified _IYLDDLPSL_ 0 0 0 ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.78169 1047.54883 0.47565 0.00024961 0.58486 0.00030692 1.0605 0.00055654 524.7818316253697 86.815 0.16351 86.815 86.745 86.909 0 -0.024973 0.00031227 NaN 23.148 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 357950 25325 4451 17163 17489 0.02695501146308743 IYLDELQVI 9 Unmodified _IYLDELQVI_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.31103515625 2 553.310615 1104.60668 0.45544 0.000252 0.39591 0.00021906 0.85134 0.00047106 553.3107026243083 88.768 0.42136 88.768 88.554 88.975 0 76 25 4 0 0 0 0.038285 2 49151 49056;49151 50.855 10.968 1 6470400 25326 6999 17164 17490 29901;29902 29902 0.05855763071713227 IYLDELQVI 9 Unmodified _IYLDELQVI_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3106689453125 2 553.310615 1104.60668 0.61746 0.00034164 -0.13465 -7.4505E-05 0.4828 0.00026714 553.3104223570525 89.29 0.45687 88.788 88.568 89.025 -0.50171 63 19 4 0 0 0 0.023164 2 48846 48755;48846 60.39 14.369 1 9698200 25327 6999 17164 17490 29903;29904 29904 0.05855763071713227 IYLDELQVI 9 Unmodified _IYLDELQVI_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25;ENST00000463188.5_1_2:219529923-219536693:-|nuORF;ENST00000473034.5_1_2:219533245-219536693:-|nuORF ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.310791015625 2 553.310615 1104.60668 0.42683 0.00023617 0.065935 3.6483E-05 0.49277 0.00027265 553.310258189047 99.094 0.33926 92.919 92.689 93.028 -6.1757 45 21 3 0 0 0 0.023164 2 65754 65754;65922 60.39 16.695 1 116240000 25328 6999 17164 17490 29905;29906 29905 0.05855763071713227 IYLDGIITI 9 Unmodified _IYLDGIITI_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000461037.2_9:69234942-69249581:-|nuORF;ENST00000495302.5_1_9:151417-166034:-|nuORF;ENST00000431099.3_1_9:160122-173274:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B;ENST00000476973.2_9:69243634-69261296:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.802490234375 2 510.802426 1019.5903 0.35959 0.00018368 0.21924 0.00011199 0.57884 0.00029567 510.8024204650018 100.6 0.19802 94.427 94.33 94.528 -6.1757 42 13 4 0 0 0 0.03327 1 67302 67302 53.576 11.481 1 162830000 25329 4842;13993 17165 17491 29907 29907 0.08128681905623125 IYLDIDQKH 9 Unmodified _IYLDIDQKH_ 0 0 0 REV__ENST00000376440.6_1_13:99890691-99992665:+|nuORF REV__ENST00000376440.6_1_13:99890691-99992665:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 572.2603759765625 2 572.803488 1143.59242 0.80749 0.00046253 -0.98368 -0.00056345 -0.17619 -0.00010092 572.8024975913953 35.235 0.23356 31.14 31.041 31.274 -4.0951 17 13 2 0 0 0 0.19891 1 20353 20353 3.9444 0 1 6447900 + 25330 26222 17166 17492 29908 29908 0.02637110643422602 IYLDIIHTY 9 Unmodified _IYLDIIHTY_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8102416992188 2 575.810782 1149.60701 0.80613 0.00046418 0.39569 0.00022784 1.2018 0.00069202 575.811857048819 73.235 0.28381 72.759 72.63 72.913 -0.47588 23 12 3 0 0 0 0.03327 1 40056 40056 53.576 31.829 1 991460 25331 6165 17167 17493 29909 29909 0.03819182791585263 IYLDLPQNF 9 Unmodified _IYLDLPQNF_ 0 0 0 ENST00000502341.5_1_5:141348723-141357950:+|nuORF;ENSG00000013561|ENST00000394520|RNF14 ENST00000502341.5_1_5:141348723-141357950:+|nuORF ENST00000502341.5_1_5:141348723-141357950:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7982177734375 2 561.795132 1121.57571 0.66922 0.00037596 3.0451 0.0017107 3.7143 0.0020867 561.7972639877885 86.21 0.51521 85.707 85.343 85.858 -0.50318 46 20 3 0 0 0 0.30202 1 47142 47142 18.135 1.1927 1 2036300 25332 477 17168 17494 29910 29910 0.019786097574751693 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.2168273925781 3 393.216991 1176.62914 0.34152 0.00013429 0.58718 0.00023089 0.9287 0.00036518 393.2172171283435 63.33 0.43992 62.843 62.642 63.082 -0.48617 62 19 5 0 0 0 0.06294 2 34476 34476;34578 38.615 21.172 1 24612000 25333 3760 17169 17495 29911;29912 29911 0.04789407260000189 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8011474609375 2 589.321848 1176.62914 0.29564 0.00017422 2.6318 0.001551 2.9274 0.0017252 589.323250228351 63.301 0.2403 62.815 62.729 62.969 -0.48617 15 10 2 0 0 0 0.17331 1 34511 34511 22.736 4.5899 1 1112500 25334 3760 17169 17495 29913 29913 0.04789407260000189 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2173156738281 3 393.216991 1176.62914 0.19583 7.7004E-05 0.042035 1.6529E-05 0.23787 9.3533E-05 393.2170182019026 62.899 0.78103 62.878 62.66 63.442 -0.021614 127 39 6 0 0 0 0.039985 4 34521 34313;34415;34521;34637 45.74 21.172 1 518030000 25335 3760 17169 17495 29914;29915;29916;29917 29916 0.04789407260000189 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3219604492188 2 589.321848 1176.62914 0.36322 0.00021405 0.048682 2.869E-05 0.4119 0.00024274 589.3220342481043 62.888 0.3922 62.867 62.717 63.109 -0.021614 47 19 4 0 0 0 0.013041 2 34358 34358;34463 71.922 25.901 1 24761000 25336 3760 17169 17495 29918;29919 29918 0.04789407260000189 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.217529296875 3 393.216991 1176.62914 0.66873 0.00026296 0.5561 0.00021867 1.2248 0.00048162 393.21718759653504 63.692 0.54356 63.682 63.413 63.956 -0.010532 53 26 3 0 0 0 0.047788 1 34844 34844 35.612 18.17 1 7004500 25337 3760 17169 17495 29920 29920 0.04789407260000189 IYLDTHFRL 9 Unmodified _IYLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3222045898438 2 589.321848 1176.62914 -0.0016443 -9.6901E-07 0.075873 4.4714E-05 0.074229 4.3745E-05 589.3218566289692 85.174 0.87607 78.999 78.548 79.424 -6.1757 147 53 3 0 0 0 0.0030184 5 55938 55807;55938;56070;56197;56330 126.57 44.953 1 116320000 25338 3760 17169 17495 29921;29922;29923;29924;29925 29922 0.04789407260000189 IYLDTHFRLL 10 Unmodified _IYLDTHFRLL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.9114990234375 3 430.911679 1289.71321 0.28008 0.00012069 -0.82902 -0.00035723 -0.54894 -0.00023654 430.91128840224934 73.121 0.30096 73.163 72.989 73.29 0.041725 34 14 3 0 0 0 0.24975 1 40260 40260 30.431 12.568 1 18233000 25339 3760 17170 17496 29926 29926 0.07993938356912622 IYLEHTESI 9 Unmodified _IYLEHTESI_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7832641601562 2 552.782222 1103.54989 1.153 0.00063737 -0.12058 -6.6654E-05 1.0324 0.00057071 552.7823813988169 42.637 0.28783 42.637 42.488 42.776 0 32 14 3 0 0 0 0.01958 1 23086 23086 81.613 24.142 1 8812700 25340 5618 17171 17497 29927 29927 0.0022571551517103217 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.2376403808594 3 374.237392 1119.69035 0.42658 0.00015964 0.41284 0.0001545 0.83942 0.00031414 374.2375061390847 49.116 0.48502 48.744 48.539 49.024 -0.37172 70 23 5 0 0 0 0.021948 2 26317 26317;26419 64.927 38.929 1 100500000 25341 16412 17172 17498 29928;29929 29928 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8529663085938 2 560.85245 1119.69035 0.61064 0.00034248 0.64371 0.00036103 1.2544 0.00070351 560.8526976132877 49.086 0.32425 48.714 48.558 48.882 -0.37172 50 15 4 0 0 0 0.0047912 2 26347 26347;26457 117.84 64.005 1 52825000 25342 16412 17172 17498 29930;29931 29930 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.23779296875 3 374.237392 1119.69035 0.23579 8.8243E-05 -0.58394 -0.00021853 -0.34815 -0.00013029 374.237116297324 48.768 0.70047 48.724 48.555 49.255 -0.04369 88 34 5 0 0 0 0.0081887 3 26270 26270;26372;26492 85.764 47.993 1 368790000 25343 16412 17172 17498 29932;29933;29934 29932 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8529052734375 2 560.85245 1119.69035 0.69257 0.00038843 -0.82684 -0.00046373 -0.13427 -7.5307E-05 560.8519166614134 48.768 0.40907 48.724 48.555 48.964 -0.04369 72 20 5 0 0 0 0.0073703 2 26280 26280;26384 110.79 56.96 1 242370000 25344 16412 17172 17498 29935;29936 29935 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2380676269531 3 374.237392 1119.69035 1.7844 0.0006678 -0.26206 -9.8072E-05 1.5224 0.00056973 374.2372319012191 54.146 0.65061 48.281 47.991 48.641 -5.8653 144 38 5 0 0 0 0.010301 3 34429 34150;34287;34429 69.338 38.929 1 903050000 25345 16412 17172 17498 29937;29938;29939 29939 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8531494140625 2 560.85245 1119.69035 1.4526 0.00081468 -0.13173 -7.3884E-05 1.3208 0.0007408 560.8523365942812 54.139 0.60297 48.274 48.02 48.623 -5.8653 111 35 4 0 0 0 0.0026383 3 34289 34161;34289;34433 128.57 73.07 1 358540000 25346 16412 17172 17498 29940;29941;29942 29941 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2375793457031 3 374.237392 1119.69035 1.345 0.00050334 0.18817 7.0419E-05 1.5332 0.00057376 374.2374871809947 66.062 0.45436 59.886 59.723 60.177 -6.1757 34 25 2 0 0 0 0.040683 1 42912 42912 39.213 19.851 1 15611000 25347 16412 17172 17498 29943 29943 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2385559082031 3 374.237392 1119.69035 1.2367 0.00046282 1.5112 0.00056554 2.7479 0.0010284 374.2380435066915 67.109 1.2079 60.934 60.177 61.385 -6.1757 105 68 2 0 0 0 0.013609 4 43642 43513;43642;43768;43896 57.108 34.45 1 42897000 25348 16412 17172 17498 29944;29945;29946;29947 29945 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2377624511719 3 374.237392 1119.69035 1.1505 0.00043057 -0.031522 -1.1797E-05 1.119 0.00041877 374.23734521199754 68.174 0.69783 61.998 61.385 62.083 -6.1757 64 39 2 0 0 0 0.021948 2 44312 44312;44462 57.108 32.117 1 29197000 25349 16412 17172 17498 29948;29949 29948 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.23779296875 3 374.237392 1119.69035 1.3067 0.00048902 -0.65388 -0.00024471 0.65283 0.00024431 374.2371051855807 68.288 0.52546 62.112 62.046 62.572 -6.1757 57 31 2 0 0 0 0.033587 2 44593 44593;44724 57.108 25.839 1 38490000 25350 16412 17172 17498 29950;29951 29950 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2379760742188 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 54.614 1 48.748 48.248 49.248 -5.8653 0 0 0 0.041018 1 34667 34667 49.742 24.751 1 25351 16412 17172 17498 29952 29952 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2368774414062 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 66.226 1 60.05 59.55 60.55 -6.1757 0 0 0 0.041018 1 43065 43065 49.742 17.436 1 25352 16412 17172 17498 29953 29953 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2374877929688 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 66.441 1 60.265 59.765 60.765 -6.1757 0 0 0 0.049786 1 43216 43216 61.09 28.784 1 25353 16412 17172 17498 29954 29954 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2387390136719 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 66.678 1 60.503 60.003 61.003 -6.1757 0 0 0 0.10661 1 43380 43380 46.022 13.717 1 25354 16412 17172 17498 29955 29955 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2388000488281 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 67.574 1 61.398 60.898 61.898 -6.1757 0 0 0 0.049786 1 44030 44030 46.022 26.765 1 25355 16412 17172 17498 29956 29956 0.13528919239411152 IYLEKLKTI 9 Unmodified _IYLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 374.2389526367188 3 374.237392 1119.69035 NaN NaN NaN NaN NaN NaN NaN 67.761 1 61.586 61.086 62.086 -6.1757 0 0 0 0.030047 1 44166 44166 61.09 36.099 1 25356 16412 17172 17498 29957 29957 0.13528919239411152 IYLERFPIF 9 Unmodified _IYLERFPIF_ 0 0 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.336669921875 2 599.336967 1196.65938 NaN NaN NaN NaN NaN NaN NaN 88.426 1 88.479 87.979 88.979 0.053352 0 0 0 0.028685 1 49196 49196 67.838 27.39 1 25357 440 17173 17499 29958 29958 0.0689176592518379 IYLEVIHNL 9 Unmodified _IYLEVIHNL_ 0 0 0 nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10;ENST00000491074.5_1_2:183605037-183619453:+|nuORF;ENST00000418559.5_1_2:183605037-183617329:+|nuORF nc|ENSG00000077232|Q8IXB1-2|DNAJC10 nc|ENSG00000077232|Q8IXB1-2|DNAJC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3189697265625 2 557.318774 1112.623 0.88807 0.00049494 -0.50849 -0.00028339 0.37957 0.00021154 557.3183973000305 73.333 0.27946 72.857 72.717 72.996 -0.47588 26 12 3 0 0 0 0.047714 1 40091 40091 58.679 33.28 1 2347500 25358 1208 17174 17500 29959 29959 0.07118889028447484 IYLFELSF 8 Unmodified _IYLFELSF_ 0 0 0 REV__ENST00000319888.10_1_18:2567388-2567427:-|nuORF REV__ENST00000319888.10_1_18:2567388-2567427:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2758178710938 2 516.276044 1030.53753 0.37268 0.00019241 -2.0419 -0.0010542 -1.6692 -0.00086176 516.2751222673096 76.007 0.60791 75.528 75.102 75.71 -0.47945 72 26 4 0 0 0 0.57408 1 41555 41555 28.173 1.2896 1 5692300 + 25359 25497 17175 17501 29960 29960 0.02348723842783329 IYLFELSFQ 9 Unmodified _IYLFELSFQ_ 0 0 0 REV__ENST00000319888.10_1_18:2567388-2567427:-|nuORF REV__ENST00000319888.10_1_18:2567388-2567427:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.305908203125 2 580.305332 1158.59611 0.52588 0.00030517 -0.819 -0.00047527 -0.29313 -0.0001701 580.3047351857967 83.727 0.21655 83.23 83.15 83.367 -0.49751 15 8 2 0 0 0 0.50598 1 45827 45827 6.7232 0 1 471790 + 25360 25497 17176 17502 29961 29961 0.02315780417256974 IYLFFDEE 8 Unmodified _IYLFFDEE_ 0 0 0 REV__ENSG00000170296|ENST00000302386|GABARAP REV__ENSG00000170296|ENST00000302386|GABARAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.1710815429688 3 359.170936 1074.49098 0.51496 0.00018496 -0.96234 -0.00034565 -0.44738 -0.00016069 359.1705801507436 62.813 0.31871 62.327 62.141 62.46 -0.48617 34 15 3 0 0 0 0.79669 2 34184 34184;34305 6.2058 1.6769 1 14691000 + 25361 22468 17177 17503 29962;29963 29962 -0.04328760779139884 IYLGQLECF 9 Carbamidomethyl (C) _IYLGQLEC(Carbamidomethyl (C))F_ IYLGQLEC(1)F IYLGQLEC(82)F 0 1 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS;ENST00000531690.5_1_6:1717847-1960173:-|nuORF;GMDS-VAPB|1|fusion;GMDS-VAPB|2|fusion nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7822875976562 2 571.781167 1141.54778 0.9896 0.00056584 -0.064046 -3.662E-05 0.92556 0.00052921 571.7811000081143 90.334 0.69726 84.158 83.826 84.523 -6.1757 73 40 2 0 0 0 0.0094915 3 59540 59540;59677;59807 81.864 36.369 1 21634000 25362 2911 17178 17504 29964;29965;29966 29964 299 -0.01733036494283624 IYLHALWFT 9 Unmodified _IYLHALWFT_ 0 0 0 ENST00000436193.5_2_3:15643483-15643624:+|nuORF ENST00000436193.5_2_3:15643483-15643624:+|nuORF ENST00000436193.5_2_3:15643483-15643624:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 582.3143920898438 2 582.316035 1162.61752 NaN NaN NaN NaN NaN NaN NaN 84.315 1 78.139 77.639 78.639 -6.1757 0 0 0 0.23581 1 55465 55465 28.487 9.2299 1 25363 13332 17179 17505 29967 29967 0.04271210236629486 IYLHNHLSF 9 Unmodified _IYLHNHLSF_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8696594238281 3 381.869703 1142.58728 0.27973 0.00010682 0.76852 0.00029348 1.0483 0.0004003 381.8698459849148 45.882 0.2099 45.854 45.763 45.973 -0.028011 17 9 2 0 0 0 0.32871 1 24679 24679 26.268 12.362 1 3411300 25364 1948 17180 17506 29968 29968 0.02168851571468622 IYLHRVSKDI 10 Unmodified _IYLHRVSKDI_ 0 0 0 REV__ENSG00000164576|ENST00000297109|SAP30L REV__ENSG00000164576|ENST00000297109|SAP30L MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2435913085938 3 415.243429 1242.70846 1.2633 0.00052456 -0.88299 -0.00036666 0.38026 0.0001579 415.2428637418583 42.006 0.26357 37.321 37.16 37.423 -4.6846 22 16 2 0 0 0 0.65023 1 25304 25304 8.4443 1.4072 1 7090800 + 25365 21924 17181 17507 29969 29969 0.09681054214161122 IYLIGGDLGPF 11 Unmodified _IYLIGGDLGPF_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8197021484375 2 582.818607 1163.62266 0.66224 0.00038597 2.5157 0.0014662 3.178 0.0018522 582.8197730494492 62.321 0.18836 61.834 61.768 61.956 -0.48764 11 8 2 0 0 0 0.35243 1 33956 33956 24.021 4.7636 1 1446600 25366 4305 17182 17508 29970 29970 0.04739469308628941 IYLIHHQRF 9 Unmodified _IYLIHHQRF_ 0 0 0 ENSG00000183647|ENST00000597700|ZNF530;ENST00000598297.1_1_19:58116980-58118690:+|nuORF;nc|ENSG00000183647|Q6P9A1|ZNF530 ENSG00000183647|ENST00000597700|ZNF530 ENSG00000183647|ENST00000597700|ZNF530 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5653991699219 3 409.564614 1225.67201 -0.411 -0.00016833 0.91303 0.00037394 0.50203 0.00020561 409.5647767582554 31.22 0.30184 31.25 31.131 31.432 0.030106 28 12 3 0 0 0 0.025842 1 16333 16333 57.722 36.185 1 10445000 25367 9172 17183 17509 29971 29971 0.06820222108080998 IYLKNCPVL 9 Unmodified _IYLKNCPVL_ 0 0 0 REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.2843627929688 2 531.804445 1061.59434 0.73401 0.00039035 -0.23882 -0.000127 0.49519 0.00026334 531.8041217699213 67.357 0.64117 61.182 60.857 61.499 -6.1757 87 35 3 0 0 0 0.081537 1 43693 43693 42.095 4.1206 1 36371000 + 25368 28654 17184 17510 29972 29972 0.06600448127665004 IYLKNCPVL 9 Unmodified _IYLKNCPVL_ 0 0 0 REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF REV__ENST00000546000.1_1_11:115047196-115049577:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.804445 1061.59434 0.31443 0.00016722 0.020229 1.0758E-05 0.33466 0.00017797 531.804521131657 61.117 0.2554 61.074 60.906 61.162 -0.04351 -0.053856 0.00018455 NaN 42.095 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 15997000 + 25369 28654 17184 17510 0.06600448127665004 IYLKSPFPF 9 Unmodified _IYLKSPFPF_ 0 0 0 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 MSMS AL20221201_MKP_PDAC_01 4 556.3154296875 2 556.312961 1110.61137 NaN NaN NaN NaN NaN NaN NaN 73.731 1 67.555 67.055 68.055 -6.1757 0 0 0 0.08978 1 48208 48208 46.021 9.5548 1 + 25370 20344 17185 17511 29973 29973 0.06048692005128942 IYLKVQQEL 9 Unmodified _IYLKVQQEL_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3320922851562 2 567.331882 1132.64921 0.52324 0.00029685 -0.34693 -0.00019683 0.17631 0.00010003 567.3316900561377 53.142 0.26868 52.69 52.554 52.823 -0.45173 31 13 3 0 0 0 0.0085857 1 28729 28729 122.18 44.03 1 5582400 25371 2992 17186 17512 29974 29974 0.0881915819995811 IYLKVQQEL 9 Unmodified _IYLKVQQEL_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3345336914062 2 567.331882 1132.64921 1.4711 0.00083458 -1.8986 -0.0010771 -0.42755 -0.00024256 567.3317936675485 59 0.40814 52.925 52.886 53.295 -6.0745 31 22 2 0 0 0 0.08907 1 37848 37848 45.7 13.583 1 62201000 25372 2992 17186 17512 29975 29975 0.0881915819995811 IYLKVQQEL 9 Unmodified _IYLKVQQEL_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.331882 1132.64921 0.74531 0.00042284 0.29554 0.00016767 1.0408 0.0005905 567.3315008327412 52.826 0.2223 52.763 52.603 52.826 -0.063423 -0.029764 0.00068134 NaN 122.18 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1820300 25373 2992 17186 17512 0.0881915819995811 IYLKWFSC 8 Unmodified _IYLKWFSC_ 0 0 0 REV__ENST00000396068.6_2_7:36483395-36483458:+|nuORF REV__ENST00000396068.6_2_7:36483395-36483458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2708129882812 2 530.270238 1058.52592 0.46521 0.00024668 -1.3649 -0.00072379 -0.89974 -0.00047711 530.2696839413825 62.823 0.31871 62.336 62.141 62.46 -0.48617 26 15 2 0 0 0 0.57045 2 34186 34186;34303 28.487 28.487 1 13136000 + 25374 26497 17187 17513 29976;29977 29976 -0.0009979645217299549 IYLLENGLNLF 11 Unmodified _IYLLENGLNLF_ 0 0 0 ENSG00000176986|ENST00000345254|SEC24C;nc|ENSG00000176986|P53992-2|SEC24C ENSG00000176986|ENST00000345254|SEC24C ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.364990234375 2 654.863546 1307.71254 0.74859 0.00049022 0.25879 0.00016947 1.0074 0.0006597 654.8641094847281 101.44 0.09787 95.262 95.211 95.309 -6.1757 12 4 3 0 0 0 0.036454 1 68064 68064 53.833 4.2785 1 59173000 25375 8643 17188 17514 29978 29978 0.07099098917205993 IYLLETIPSEI 11 Unmodified _IYLLETIPSEI_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.9126586914062 3 430.911233 1289.71187 1.1093 0.000478 0.33597 0.00014477 1.4452 0.00062277 430.91180002081956 94.989 0.44913 88.813 88.463 88.912 -6.1757 53 25 4 0 0 0 0.10551 1 62881 62881 27.088 0 1 60225000 25376 4672 17189 17515 29979 29979 0.07860259477456566 IYLLRWGRQ 9 Unmodified _IYLLRWGRQ_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2211303710938 3 402.236497 1203.68766 0.54232 0.00021814 -1.167 -0.0004694 -0.62467 -0.00025127 402.2358852966957 50.887 0.1992 50.474 50.358 50.557 -0.41351 16 9 2 0 0 0 0.2188 1 27351 27351 1.0715 0.3738 1 1199900 + 25377 17894 17190 17516 29980 29980 0.09396508625127353 IYLLVPPV 8 Unmodified _IYLLVPPV_ 0 0 0 ENSG00000180785|ENST00000396952|OR51E1 ENSG00000180785|ENST00000396952|OR51E1 ENSG00000180785|ENST00000396952|OR51E1 MSMS AL20221201_MKP_PDAC_01 4 457.2919006347656 2 457.291497 912.568441 NaN NaN NaN NaN NaN NaN NaN 95.984 1 89.808 89.308 90.308 -6.1757 0 0 0 0.94749 1 63587 63587 11.114 2.5212 1 25378 8923 17191 17517 29981 29981 0.10865921947709012 IYLNAGPMLF 10 Oxidation (M) _IYLNAGPM(Oxidation (M))LF_ IYLNAGPM(1)LF IYLNAGPM(85)LF 0 0 1 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF ENSG00000065883|ENST00000181839|CDK13 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8003540039062 2 577.79936 1153.58417 0.1375 7.9446E-05 -0.10214 -5.9014E-05 0.035362 2.0432E-05 577.7995114896064 83.929 0.21584 83.992 83.806 84.022 0.063171 11 8 2 0 0 0 0.011274 1 46440 46440 85.357 59.089 1 10618000 25379 918 17192 17518 29982 29982 142 0.013518404024353003 IYLNITNTL 9 Unmodified _IYLNITNTL_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8032836914062 2 532.802957 1063.59136 0.3761 0.00020039 0.019349 1.0309E-05 0.39545 0.0002107 532.8028556090461 79.035 0.34341 79.09 78.913 79.257 0.05497 34 13 3 0 0 0 0.038285 1 43624 43624 50.855 3.1063 1 11342000 25380 2429 17193 17519 29983 29983 0.062108962745242025 IYLNITNTL 9 Unmodified _IYLNITNTL_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8024291992188 2 532.802957 1063.59136 1.0633 0.00056655 -0.5307 -0.00028276 0.53265 0.0002838 532.8026942726009 87.047 0.55785 80.871 80.588 81.146 -6.1757 76 30 3 0 0 0 0.06187 1 57517 57517 42.095 13.608 1 50671000 25381 2429 17193 17519 29984 29984 0.062108962745242025 IYLNNIIPRF 10 Unmodified _IYLNNIIPRF_ 0 0 0 ENSG00000171943|ENST00000367123|SRGAP2C;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000266028|ENST00000573034|SRGAP2 ENSG00000171943|ENST00000367123|SRGAP2C ENSG00000171943|ENST00000367123|SRGAP2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.86865234375 2 631.866423 1261.71829 0.76888 0.00048583 -0.62477 -0.00039477 0.14412 9.1062E-05 631.8665139581908 98.523 0.1217 92.348 92.28 92.401 -6.1757 13 8 2 0 0 0 7.8533E-07 1 65350 65350 131.27 87.409 1 50436000 25382 8163 17194 17520 29985 29985 0.09790242219492029 IYLNNVIMRF 10 Oxidation (M) _IYLNNVIM(Oxidation (M))RF_ IYLNNVIM(1)RF IYLNNVIM(82)RF 0 0 1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.8529052734375 2 649.849916 1297.68528 1.0375 0.00067422 1.7052 0.0011081 2.7427 0.0017824 649.8514441482586 71.552 0.23715 71.591 71.469 71.706 0.039024 35 10 4 0 0 0 0.013171 1 39379 39379 81.89 45.763 1 14479000 25383 9885 17195 17521 29986 29986 1587 0.04834292105147142 IYLNNVIMRF 10 Oxidation (M) _IYLNNVIM(Oxidation (M))RF_ IYLNNVIM(1)RF IYLNNVIM(48)RF 0 0 1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.85302734375 2 649.849916 1297.68528 0.79065 0.0005138 0.077444 5.0327E-05 0.86809 0.00056413 649.8502853335411 71.84 0.28661 71.879 71.748 72.035 0.039024 44 13 4 0 0 0 0.095098 1 39522 39522 47.749 26.002 1 14499000 25384 9885 17195 17521 29987 29987 1587 0.04834292105147142 IYLNNVIMRF 10 Oxidation (M) _IYLNNVIM(Oxidation (M))RF_ IYLNNVIM(1)RF IYLNNVIM(120)RF 0 0 1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.8509521484375 2 649.849916 1297.68528 1.0158 0.0006601 -0.58043 -0.00037719 0.43534 0.00028291 649.849862406049 87.638 0.43602 81.463 81.182 81.618 -6.1757 41 23 2 0 0 0 3.1238E-05 1 57762 57762 123.45 75.702 1 16098000 25385 9885 17195 17521 29988 29988 1587 0.04834292105147142 IYLNNVIMRF 10 Oxidation (M) _IYLNNVIM(Oxidation (M))RF_ IYLNNVIM(1)RF IYLNNVIM(92)RF 0 0 1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.85107421875 2 649.849916 1297.68528 1.2582 0.00081764 -0.19615 -0.00012746 1.0621 0.00069018 649.849512512961 88.03 0.56592 81.854 81.602 82.168 -6.1757 51 31 2 0 0 0 0.0073675 2 58098 57958;58098 92.491 61.223 1 13195000 25386 9885 17195 17521 29989;29990 29990 1587 0.04834292105147142 IYLNNVIMRF 10 Unmodified _IYLNNVIMRF_ 0 0 0 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.853515625 2 641.852458 1281.69036 1.3438 0.00086252 0.053862 3.4571E-05 1.3977 0.00089709 641.8526528136579 82.448 0.26936 82.51 82.394 82.664 0.061996 14 9 2 0 0 0 0.45406 1 45659 45659 27.629 15.097 1 2708800 25387 9885 17195 17522 29991 29991 0.06078595967755973 IYLNNVIMRF 10 Unmodified _IYLNNVIMRF_ 0 0 0 ENST00000537556.1_1_12:64238596-64474299:+|nuORF;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;ENSG00000196935|ENST00000355086|SRGAP1 ENST00000537556.1_1_12:64238596-64474299:+|nuORF ENST00000537556.1_1_12:64238596-64474299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.8527221679688 2 641.852458 1281.69036 1.1143 0.0007152 -0.30913 -0.00019842 0.80514 0.00051678 641.8520349217816 97.754 0.26527 91.578 91.421 91.687 -6.1757 41 17 3 0 0 0 0.017375 1 64774 64774 103.75 63.791 1 137650000 25388 9885 17195 17522 29992 29992 0.06078595967755973 IYLNSSLVQF 10 Unmodified _IYLNSSLVQF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3209228515625 2 592.321514 1182.62847 -0.27956 -0.00016559 0.68896 0.00040808 0.40939 0.00024249 592.3219071421879 84.195 0.18269 84.259 84.191 84.374 0.063171 12 7 2 0 0 0 0.024115 1 46635 46635 71.922 26.223 1 21453000 25389 445 17196 17523 29993 29993 0.04446567820264136 IYLNSSLVQF 10 Unmodified _IYLNSSLVQF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.322021484375 2 592.321514 1182.62847 0.52617 0.00031166 0.0073492 4.3531E-06 0.53352 0.00031602 592.3217431315335 93.681 0.87061 87.505 87.193 88.064 -6.1757 118 52 4 0 0 0 0.043729 2 62068 61932;62068 61.357 15.658 1 44017000 25390 445 17196 17523 29994;29995 29995 0.04446567820264136 IYLNSSLVQF 10 Unmodified _IYLNSSLVQF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 592.321514 1182.62847 0.53543 0.00031715 0.36896 0.00021854 0.90439 0.00053569 592.3215062378622 84.724 0.27532 84.224 84.136 84.411 -0.49961 -0.017316 -0.00019687 NaN 71.922 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 478970 25391 445 17196 17523 0.04446567820264136 IYLPEVRKI 9 Unmodified _IYLPEVRKI_ 0 0 0 ENSG00000130338|ENST00000367097|TULP4;nc|ENSG00000130338|Q9NRJ4-2|TULP4 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5690307617188 3 377.569253 1129.68593 0.67198 0.00025372 -1.052 -0.0003972 -0.38001 -0.00014348 377.56929340787934 50.773 0.26458 50.36 50.214 50.479 -0.41351 24 12 3 0 0 0 0.44883 1 27380 27380 10.151 3.9587 1 1742700 25392 4204 17197 17524 29996 29996 0.126274548164929 IYLPEVRKI 9 Unmodified _IYLPEVRKI_ 0 0 0 ENSG00000130338|ENST00000367097|TULP4;nc|ENSG00000130338|Q9NRJ4-2|TULP4 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5692138671875 3 377.569253 1129.68593 1.1157 0.00042125 -0.48425 -0.00018284 0.63143 0.00023841 377.56910030311076 50.449 0.427 50.4 50.148 50.575 -0.048828 60 20 4 0 0 0 0.35911 1 27340 27340 14.405 4.8614 1 10615000 25393 4204 17197 17524 29997 29997 0.126274548164929 IYLPEVRKI 9 Unmodified _IYLPEVRKI_ 0 0 0 ENSG00000130338|ENST00000367097|TULP4;nc|ENSG00000130338|Q9NRJ4-2|TULP4 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5696411132812 3 377.569253 1129.68593 1.4027 0.00052963 0.27768 0.00010484 1.6804 0.00063447 377.5692891674202 55.686 0.41001 49.765 49.543 49.953 -5.9211 52 24 3 0 0 0 0.069655 2 35548 35417;35548 40.239 29.44 1 28396000 25394 4204 17197 17524 29998;29999 29999 0.126274548164929 IYLPIANVARI 11 Unmodified _IYLPIANVARI_ 0 0 0 ENSG00000120837|ENST00000240055|NFYB ENSG00000120837|ENST00000240055|NFYB ENSG00000120837|ENST00000240055|NFYB MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3858642578125 2 621.882073 1241.74959 1.1311 0.00070341 1.9406 0.0012068 3.0717 0.0019103 621.8816689674504 98.101 0.23358 91.925 91.781 92.014 -6.1757 31 14 3 0 0 0 4.6554E-06 1 65030 65030 96.111 68.888 1 35745000 25395 3545 17198 17525 30000 30000 0.13838815253598113 IYLPYLHEW 9 Unmodified _IYLPYLHEW_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3201904296875 2 617.318774 1232.623 1.2182 0.00075201 0.8556 0.00052818 2.0738 0.0012802 617.3192194957185 82.717 0.38655 82.779 82.582 82.969 0.062004 50 14 4 0 0 0 0.0077963 2 45707 45707;45804 109.63 79.789 1 37104000 25396 1123;15086 17199 17526 30001;30002 30001 0.015988890284461377 IYLPYLHEW 9 Unmodified _IYLPYLHEW_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8215942382812 2 617.318774 1232.623 1.1494 0.00070955 0.073609 4.544E-05 1.223 0.00075499 617.3187233545318 97.195 0.41486 91.02 90.807 91.221 -6.1757 76 23 5 0 0 0 0.0012811 2 64335 64335;64452 137.59 97.636 1 483220000 25397 1123;15086 17199 17526 30003;30004 30003 0.015988890284461377 IYLPYLHEW 9 Unmodified _IYLPYLHEW_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENSG00000074319|ENST00000251968|TSG101 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 617.318774 1232.623 0.63228 0.00039032 1.8051 0.0011143 2.4374 0.0015046 617.3196394441528 83.348 0.24307 82.85 82.719 82.962 -0.49751 0.035868 0.00080425 NaN 109.63 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 519050 25398 1123;15086 17199 17526 0.015988890284461377 IYLPYLQNW 9 Unmodified _IYLPYLQNW_ 0 0 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.322998046875 2 605.318774 1208.623 3.9754 0.0024064 1.189 0.0007197 5.1643 0.0031261 605.31948489478 98.655 0.2372 98.627 98.481 98.718 -0.028282 23 8 4 0 0 0 0.010712 1 54791 54791 78.445 50.816 1 9970500 25399 6090 17200 17527 30005 30005 0.02702889028455502 IYLPYLQNW 9 Unmodified _IYLPYLQNW_ 0 0 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3201293945312 2 605.318774 1208.623 0.62439 0.00037795 0.37507 0.00022704 0.99946 0.00060499 605.3188520122086 100.48 0.17352 94.302 94.215 94.389 -6.1757 28 10 4 0 0 0 0.012158 1 67167 67167 74.396 40.294 1 221830000 25400 6090 17200 17527 30006 30006 0.02702889028455502 IYLQLDCARF 10 Carbamidomethyl (C) _IYLQLDC(Carbamidomethyl (C))ARF_ IYLQLDC(1)ARF IYLQLDC(68)ARF 0 1 0 nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B nc|ENSG00000130939|O95155-3|UBE4B nc|ENSG00000130939|O95155-3|UBE4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.831787109375 2 649.831723 1297.64889 0.8905 0.00057867 0.010102 6.5649E-06 0.9006 0.00058524 649.8317161918678 68.802 0.26263 68.827 68.681 68.944 0.025146 27 11 3 0 0 0 0.03037 1 37793 37793 67.838 37.998 1 8322800 25401 4277 17201 17528 30007 30007 432 0.011974152083894296 IYLQLDCARF 10 Carbamidomethyl (C) _IYLQLDC(Carbamidomethyl (C))ARF_ 0 1 0 nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B nc|ENSG00000130939|O95155-3|UBE4B nc|ENSG00000130939|O95155-3|UBE4B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 649.831723 1297.64889 -0.049401 -3.2102E-05 0.69268 0.00045013 0.64328 0.00041802 650.3338024863128 69.296 0.11092 68.816 68.788 68.899 -0.48071 -0.0056947 0.0007558 NaN 67.838 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 571220 25402 4277 17201 17528 432 0.011974152083894296 IYLRDPVQV 9 Unmodified _IYLRDPVQV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.8163452148438 2 551.816399 1101.61824 0.93419 0.0005155 -0.7938 -0.00043803 0.14039 7.747E-05 551.8156314405297 54.089 0.30121 54.089 53.945 54.246 0 36 13 3 0 0 0 0.010362 1 29999 29999 86.332 19.875 1 11127000 25403 4651 17202 17529 30008 30008 0.07150004885693306 IYLRDPVQV 9 Unmodified _IYLRDPVQV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8153686523438 2 551.816399 1101.61824 0.11714 6.464E-05 -0.23649 -0.0001305 -0.11935 -6.5857E-05 551.8164166794014 54.642 0.33357 54.175 53.968 54.302 -0.46664 55 16 4 0 0 0 0.020676 2 29543 29543;29651 67.838 10.116 1 43337000 25404 4651 17202 17529 30009;30010 30009 0.07150004885693306 IYLRDPVQV 9 Unmodified _IYLRDPVQV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8165893554688 2 551.816399 1101.61824 0.071216 3.9298E-05 0.3914 0.00021598 0.46261 0.00025528 551.8167492361954 54.315 0.2767 54.248 54.062 54.338 -0.066936 27 13 3 0 0 0 0.030186 1 29463 29463 67.838 22.139 1 4320900 25405 4651 17202 17529 30011 30011 0.07150004885693306 IYLRDPVQV 9 Unmodified _IYLRDPVQV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8163452148438 2 551.816399 1101.61824 1.1249 0.00062076 0.018999 1.0484E-05 1.1439 0.00063125 551.8163230556247 60.78 0.70751 54.632 54.308 55.015 -6.1478 88 37 4 0 0 0 0.014763 2 38992 38992;39110 76.825 26.892 1 183930000 25406 4651 17202 17529 30012;30013 30012 0.07150004885693306 IYLRLLVKL 9 Unmodified _IYLRLLVKL_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.59375 3 377.59351 1129.7587 0.13511 5.1016E-05 0.24001 9.0625E-05 0.37512 0.00014164 377.59357102851857 76.4 0.58241 76.448 76.326 76.908 0.047943 46 24 3 0 0 0 0.019303 1 42146 42146 49.554 24.563 1 5788800 25407 858 17203 17530 30014 30014 0.19901208609940113 IYLRLLVKL 9 Unmodified _IYLRLLVKL_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3084716796875 2 565.886627 1129.7587 0.4283 0.00024237 0.22925 0.00012973 0.65755 0.0003721 565.886706843296 76.43 0.26295 76.478 76.326 76.589 0.047943 16 10 2 0 0 0 0.20358 1 42164 42164 10.074 4.3421 1 3295400 25408 858 17203 17530 30015 30015 0.19901208609940113 IYLRLLVKL 9 Unmodified _IYLRLLVKL_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.9285278320312 3 377.59351 1129.7587 0.64863 0.00024492 0.26564 0.0001003 0.91427 0.00034522 377.5935562107004 98.797 0.16768 92.621 92.535 92.702 -6.1757 35 12 4 0 0 0 0.015445 1 65563 65563 53.404 28.413 1 386960000 25409 858 17203 17530 30016 30016 0.19901208609940113 IYLRLLVKL 9 Unmodified _IYLRLLVKL_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3884887695312 2 565.886627 1129.7587 0.30741 0.00017396 0.021684 1.2271E-05 0.3291 0.00018623 565.8865993897009 98.799 0.15157 92.623 92.551 92.702 -6.1757 31 11 3 0 0 0 0.0041763 1 65564 65564 120.45 62.979 1 241270000 25410 858 17203 17530 30017 30017 0.19901208609940113 IYLSDLTYI 9 Unmodified _IYLSDLTYI_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7969970703125 2 550.79734 1099.58013 0.51687 0.00028469 0.37566 0.00020691 0.89252 0.0004916 550.7974782421633 88.922 0.41244 88.417 88.227 88.639 -0.50423 52 17 5 0 0 0 0.37804 1 48589 48589 13.508 4.1604 1 747450 25411 3203 17204 17531 30018 30018 0.0343207418034126 IYLSFRFLH 9 Unmodified _IYLSFRFLH_ 0 0 0 REV__ENST00000512805.5_1_5:180671112-180671178:-|nuORF REV__ENST00000512805.5_1_5:180671112-180671178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2255249023438 3 399.225598 1194.65496 0.19089 7.6206E-05 0.57914 0.00023121 0.77002 0.00030741 399.22572989076724 54.835 0.37804 54.768 54.542 54.92 -0.066936 46 18 4 0 0 0 0.37578 1 29793 29793 13.615 2.1202 1 15324000 + 25412 28169 17205 17532 30019 30019 0.06542301502281589 IYLSFRFLH 9 Unmodified _IYLSFRFLH_ 0 0 0 REV__ENST00000512805.5_1_5:180671112-180671178:-|nuORF REV__ENST00000512805.5_1_5:180671112-180671178:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8818969726562 3 399.225598 1194.65496 0.19089 7.6206E-05 0.57914 0.00023121 0.77002 0.00030741 399.22572989076724 54.835 0.37804 54.768 54.542 54.92 -0.066936 46 18 4 0 0 0 0.21493 1 29871 29871 4.897 2.3985 1 15324000 + 25413 28169 17205 17532 30020 30020 0.06542301502281589 IYLSGLHSW 9 Unmodified _IYLSGLHSW_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.28125 2 538.282192 1074.54983 0.33897 0.00018246 -0.91116 -0.00049046 -0.57219 -0.000308 538.2814991274768 63.103 0.49361 63.082 62.908 63.402 -0.021618 60 24 4 0 0 0 0.016184 1 34467 34467 67.344 6.9543 1 17295000 25414 2701 17206 17533 30021 30021 0.01553760305864671 IYLSKPTHW 9 Unmodified _IYLSKPTHW_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.209228515625 3 382.209836 1143.60768 0.79282 0.00030302 -1.1436 -0.00043708 -0.35074 -0.00013406 382.2091691174011 45.311 0.45203 40.356 40.072 40.524 -4.9549 103 30 4 0 0 0 0.05447 2 27654 27654;27794 55.503 38.39 1 202180000 25415 681 17207 17534 30022;30023 30022 0.041620222312758415 IYLSKPTHW 9 Unmodified _IYLSKPTHW_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8107299804688 2 572.811116 1143.60768 0.43945 0.00025172 -0.48419 -0.00027735 -0.044742 -2.5629E-05 572.8108419160635 45.31 0.39057 40.355 40.113 40.504 -4.9549 63 26 3 0 0 0 0.0085386 2 27676 27676;27814 100.09 63.964 1 52945000 25416 681 17207 17534 30024;30025 30024 0.041620222312758415 IYLSYKGNIWE 11 Unmodified _IYLSYKGNIWE_ 0 0 0 nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.8612670898438 2 693.358628 1384.7027 0.91931 0.00063741 2.4193 0.0016774 3.3386 0.0023148 693.3603960295451 97.609 0.2878 91.433 91.221 91.509 -6.1757 29 15 3 0 0 0 0.24216 1 64641 64641 29.841 8.3036 1 24896000 25417 2476 17208 17535 30026 30026 0.025739109118148917 IYLTFPVAM 9 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ IYLTFPVAM(1) IYLTFPVAM(78) 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.783447265625 2 535.783179 1069.5518 1.5091 0.00080857 -1.2287 -0.00065834 0.28039 0.00015023 535.7825406509947 82.204 0.70882 82.266 82.008 82.717 0.062004 71 27 4 0 0 0 0.010712 2 45378 45378;45482 78.445 52.103 1 54546000 25418 10608 17209 17536 30027;30028 30027 1703 0.019810529994401804 IYLTFPVAM 9 Oxidation (M) _IYLTFPVAM(Oxidation (M))_ IYLTFPVAM(1) IYLTFPVAM(50) 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.78369140625 2 535.783179 1069.5518 NaN NaN NaN NaN NaN NaN NaN 89.661 1 83.485 82.985 83.985 -6.1757 0 0 0 0.075639 1 59194 59194 49.669 9.2203 1 25419 10608 17209 17536 30029 30029 1703 0.019810529994401804 IYLTFPVAM 9 Unmodified _IYLTFPVAM_ 0 0 0 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7860717773438 2 527.785721 1053.55689 1.7179 0.00090669 -1.0185 -0.00053754 0.69944 0.00036915 527.7853260909745 100.88 0.17503 94.7 94.623 94.798 -6.1757 30 9 5 0 0 0 0.016494 1 67559 67559 67.035 46.164 1 298540000 25420 10608 17209 17537 30030 30030 0.03225356862071749 IYLTFPVAMF 10 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ IYLTFPVAM(1)F IYLTFPVAM(64)F 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3171997070312 2 609.317386 1216.62022 2.1519 0.0013112 -1.5838 -0.00096506 0.56804 0.00034612 609.3165011231504 100.15 0.16545 100.11 100.02 100.18 -0.036301 16 5 5 0 0 0 0.039183 1 55633 55633 63.563 38.889 1 21915000 25421 10608 17210 17538 30031 30031 1703 0.02057297579290207 IYLTFPVAMF 10 Oxidation (M) _IYLTFPVAM(Oxidation (M))F_ IYLTFPVAM(1)F IYLTFPVAM(71)F 0 0 1 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3193359375 2 609.317386 1216.62022 1.2134 0.00073937 0.75459 0.00045979 1.968 0.0011992 609.31822665798 101.04 0.12566 94.867 94.798 94.923 -6.1757 17 6 4 0 0 0 0.02544 1 67721 67721 70.716 46.042 1 74897000 25422 10608 17210 17538 30032 30032 1703 0.02057297579290207 IYLTFPVAMF 10 Unmodified _IYLTFPVAMF_ 0 0 0 ENST00000601829.1_1_19:7694719-7695635:+|nuORF;ENSG00000229833|ENST00000594797|PET100 ENST00000601829.1_1_19:7694719-7695635:+|nuORF ENST00000601829.1_1_19:7694719-7695635:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3201293945312 2 601.319928 1200.6253 0.1909 0.00011479 1.6489 0.00099151 1.8398 0.0011063 601.3212110423535 102.14 0.10574 95.964 95.898 96.003 -6.1757 14 4 4 0 0 0 0.045724 1 68551 68551 60.39 26.287 1 42880000 25423 10608 17210 17539 30033 30033 0.033016014419217754 IYLVLDSFWL 10 Unmodified _IYLVLDSFWL_ 0 0 0 chr2:113477199-113482177|50|11.1|0.21|5.7|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|64 chr2:113477199-113482177|50|11.1|0.21|5.7|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|64 chr2:113477199-113482177|50|11.1|0.21|5.7|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8502807617188 2 634.849907 1267.68526 0.95968 0.00060925 -1.4028 -0.00089059 -0.44316 -0.00028134 634.8493590014506 71.316 0.2344 71.355 71.255 71.49 0.039024 15 10 2 0 0 0 0.31022 1 39279 39279 26.884 0.61551 1 1208000 25424 100 17211 17540 30034 30034 0.06212615376830399 IYLVNEQLF 9 Unmodified _IYLVNEQLF_ 0 0 0 REV__ENSG00000122733|ENST00000242315|PHF24 REV__ENSG00000122733|ENST00000242315|PHF24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8109741210938 2 569.810782 1137.60701 0.62668 0.00035709 -0.21618 -0.00012318 0.41051 0.00023391 569.8109733670626 71.795 0.4473 71.834 71.664 72.111 0.039024 74 21 5 0 0 0 0.40476 1 39591 39591 18.135 0 1 12824000 + 25425 19357 17212 17541 30035 30035 0.04371182791555839 IYLVYFLGCSS 11 Unmodified _IYLVYFLGCSS_ 0 0 0 REV__ENST00000262498.7_1_16:58147567-58147717:-|nuORF REV__ENST00000262498.7_1_16:58147567-58147717:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.8161010742188 2 632.81775 1263.62095 NaN NaN NaN NaN NaN NaN NaN 76.836 1 76.836 76.336 77.336 0 0 0 0 0.93224 1 42714 42714 5.7319 0.50118 1 + 25426 25022 17213 17542 30036 30036 -0.0003190777163126768 IYLWINYAL 9 Unmodified _IYLWINYAL_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8233032226562 2 584.823692 1167.63283 0.18992 0.00011107 -0.65605 -0.00038367 -0.46613 -0.0002726 584.8235766897914 63.386 0.31158 62.9 62.75 63.061 -0.48617 30 13 3 0 0 0 0.14602 1 34616 34616 28.487 3.0875 1 2825900 25427 1949 17214 17543 30037 30037 0.055720770338666625 IYLWSLSL 8 Unmodified _IYLWSLSL_ 0 0 0 REV__ENSG00000130055|ENST00000374382|GDPD2 REV__ENSG00000130055|ENST00000374382|GDPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7838134765625 2 497.784036 993.553519 -0.31307 -0.00015584 -1.9555 -0.00097344 -2.2686 -0.0011293 497.7830122168156 34.024 0.43456 33.833 33.563 33.998 -0.19131 34 16 3 0 0 0 0.18881 1 17742 17742 74.396 2.474 1 9905300 + 25428 19696 17215 17544 30038 30038 0.05648430079725131 IYLYHRSF 8 Unmodified _IYLYHRSF_ 0 0 0 nc|ENSG00000153066|Q6PKC3-3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 MSMS AL20221201_MKP_PDAC_01 4 549.7886352539062 2 549.790184 1097.56581 NaN NaN NaN NaN NaN NaN NaN 72.44 1 66.264 65.764 66.764 -6.1757 0 0 0 0.62748 1 47393 47393 32.305 10.559 1 25429 6234 17216 17545 30039 30039 0.02093466542760325 IYLYLSDNQ 9 Unmodified _IYLYLSDNQ_ 0 0 0 nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7366333007812 2 564.782222 1127.54989 -0.0041247 -2.3295E-06 -2.5643 -0.0014483 -2.5684 -0.0014506 564.780364803658 56.336 0.31731 56.336 56.247 56.564 0 28 14 3 0 0 0 0.17718 1 31287 31287 20.454 11.106 1 3184400 25430 1815 17217 17546 30040 30040 -0.008782844848155946 IYLYMGLYI 9 Unmodified _IYLYMGLYI_ 0 0 0 ENST00000301067.11_1_12:49414036-49414432:-|nuORF ENST00000301067.11_1_12:49414036-49414432:-|nuORF ENST00000301067.11_1_12:49414036-49414432:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5419311523438 3 383.540195 1147.59875 NaN NaN NaN NaN NaN NaN NaN 36.963 1 36.985 36.485 37.485 0.021545 0 0 0 0.38239 1 19605 19605 25.399 0 1 25431 11565 17218 17547 30041 30041 0.030859125506140117 IYMDTIMEL 9 2 Oxidation (M) _IYM(Oxidation (M))DTIM(Oxidation (M))EL_ IYM(1)DTIM(1)EL IYM(54)DTIM(54)EL 0 0 2 nc|ENSG00000106100|Q9Y239-2|NOD1;nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1 nc|ENSG00000106100|Q9Y239-2|NOD1 nc|ENSG00000106100|Q9Y239-2|NOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7647094726562 2 580.764326 1159.5141 -0.42409 -0.0002463 0.24474 0.00014214 -0.17935 -0.00010416 580.7643729079766 55.844 0.21152 55.844 55.742 55.953 0 19 14 2 0 0 0 0.03327 1 31018 31018 53.576 25.089 1 5873600 25432 2400 17219 17548 30042 30042 412;413 -0.059278260483097256 IYMDTLNIF 9 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ IYM(1)DTLNIF IYM(71)DTLNIF 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2828369140625 2 573.281 1144.54745 0.88308 0.00050625 0.17612 0.00010097 1.0592 0.00060722 573.2812225564044 81.662 0.48456 81.167 80.907 81.392 -0.49521 72 19 5 0 0 0 0.013472 2 44631 44631;44733 70.716 37.241 1 24616000 25433 7373 17220 17549 30043;30044 30043 1272 -0.019044562141289134 IYMDTLNIF 9 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ IYM(1)DTLNIF IYM(71)DTLNIF 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2820434570312 2 573.281 1144.54745 0.98813 0.00056647 0.30562 0.0001752 1.2937 0.00074168 573.2812388869933 81.077 0.45095 81.137 80.892 81.343 0.059929 49 17 4 0 0 0 0.013472 2 44885 44777;44885 70.716 40.079 1 20856000 25434 7373 17220 17549 30045;30046 30046 1272 -0.019044562141289134 IYMDTLNIF 9 Oxidation (M) _IYM(Oxidation (M))DTLNIF_ IYM(1)DTLNIF IYM(71)DTLNIF 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2818603515625 2 573.281 1144.54745 1.2245 0.00070197 0.024571 1.4086E-05 1.2491 0.00071606 573.281045434048 89.036 0.6152 82.86 82.512 83.127 -6.1757 100 34 4 0 0 0 0.013472 3 58885 58634;58761;58885 70.716 33.506 1 79219000 25435 7373 17220 17549 30047;30048;30049 30049 1272 -0.019044562141289134 IYMDTLNIF 9 Unmodified _IYMDTLNIF_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.284912109375 2 565.283543 1128.55253 2.3897 0.0013509 -0.5319 -0.00030068 1.8578 0.0010502 565.2832161899173 95.058 0.34909 95.062 94.864 95.213 0.004158 28 12 3 0 0 0 0.095405 1 52799 52799 34.102 11.366 1 3625000 25436 7373 17220 17550 30050 30050 -0.0066015235152008245 IYMDTLNIF 9 Unmodified _IYMDTLNIF_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2848510742188 2 565.283543 1128.55253 1.3359 0.00075518 0.53357 0.00030162 1.8695 0.0010568 565.2837482591472 100.33 0.18352 94.15 94.044 94.228 -6.1757 33 11 4 0 0 0 0.013472 1 67021 67021 70.716 18.447 1 261030000 25437 7373 17220 17550 30051 30051 -0.0066015235152008245 IYMDTLNIF 9 Unmodified _IYMDTLNIF_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.283543 1128.55253 0.5513 0.00031164 0.36155 0.00020438 0.91285 0.00051602 565.2836200388576 95.485 0.33545 95.116 94.922 95.257 -0.36815 0.027265 0.00051458 NaN 34.102 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1092100 25438 7373 17220 17550 -0.0066015235152008245 IYMDTLNIFM 10 2 Oxidation (M) _IYM(Oxidation (M))DTLNIFM(Oxidation (M))_ IYM(1)DTLNIFM(1) IYM(78)DTLNIFM(78) 0 0 2 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.798583984375 2 646.7987 1291.58285 0.29869 0.00019319 -0.65959 -0.00042662 -0.3609 -0.00023343 646.7985958582954 77.257 0.40191 77.307 77.084 77.486 0.05011 50 16 4 0 0 0 0.017277 2 42590 42590;42702 78.149 58.892 1 7641900 25439 7373 17221 17551 30052;30053 30052 1272;1273 -0.05128161748621096 IYMDTLNIFM 10 2 Oxidation (M) _IYM(Oxidation (M))DTLNIFM(Oxidation (M))_ IYM(1)DTLNIFM(1) IYM(68)DTLNIFM(68) 0 0 2 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8014526367188 2 646.7987 1291.58285 -0.00972 -6.2869E-06 3.7523 0.002427 3.7426 0.0024207 646.8006627653905 85.148 0.23376 78.973 78.803 79.037 -6.1757 18 13 2 0 0 0 0.02987 1 56056 56056 68.081 50.968 1 15930000 25440 7373 17221 17551 30054 30054 1272;1273 -0.05128161748621096 IYMDTLNIFM 10 Unmodified _IYMDTLNIFM_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8040771484375 2 630.803785 1259.59302 0.91039 0.00057428 0.4733 0.00029856 1.3837 0.00087284 630.8039166190439 101.23 0.073204 95.055 95.018 95.091 -6.1757 8 4 2 0 0 0 0.02987 1 67893 67893 68.081 31.954 1 20791000 25441 7373 17221 17552 30055 30055 -0.026395540234034343 IYMDTLNIFM 10 Oxidation (M) _IYMDTLNIFM(Oxidation (M))_ IYMDTLNIFM(1) IYM(-45)DTLNIFM(45) 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-SECPEP AL20221201_MKP_PDAC_01 4 638.8021850585938 2 638.801242 1275.58793 0.35977 0.00022982 0.80045 0.00051133 1.1602 0.00074116 638.8021413939954 99.59 0.26781 93.414 93.306 93.574 -6.1757 23 16 2 0 0 0 0.072985 1 66345 66345 60.074 36.053 2 21902000 25442 7373 17221 17553 30056 30056 1272;1273 -0.038838578860350026 IYMFICSSYSI 11 Unmodified _IYMFICSSYSI_ 0 0 0 REV__ENSG00000187857|ENST00000641576|OR6C75 REV__ENSG00000187857|ENST00000641576|OR6C75 MSMS AL20221201_MKP_PDAC_01 4 442.8762817382812 3 442.875137 1325.60358 NaN NaN NaN NaN NaN NaN NaN 97.803 1 91.627 91.127 92.127 -6.1757 0 0 0 0.83655 1 64823 64823 10.315 2.3698 1 + 25443 23669 17222 17554 30057 30057 -0.046195713689485274 IYMIGGWLPYW 11 Unmodified _IYMIGGWLPYW_ 0 0 0 REV__ENSG00000156738|ENST00000345732|MS4A1 REV__ENSG00000156738|ENST00000345732|MS4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.8494262695312 2 699.849384 1397.68422 0.53183 0.0003722 -0.76775 -0.00053731 -0.23593 -0.00016511 699.8487601505398 64.421 0.74417 63.936 63.572 64.316 -0.48512 77 34 3 0 0 0 0.70701 1 35006 35006 3.5965 0 1 1817600 + 25444 21343 17223 17555 30058 30058 0.0012807773625809205 IYMLFTGH 8 Unmodified _IYMLFTGH_ 0 0 0 ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2471313476562 2 491.246763 980.478974 NaN NaN NaN NaN NaN NaN NaN 22.985 1 22.997 22.497 23.497 0.012396 0 0 0 0.97444 1 11708 11708 2.5775 0 1 25445 8932 17224 17556 30059 30059 -0.012046560033127207 IYMNYIWLF 9 Unmodified _IYMNYIWLF_ 0 0 0 REV__ENST00000486569.1_1_1:172571857-172571959:+|nuORF REV__ENST00000486569.1_1_1:172571857-172571959:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8147583007812 2 631.817553 1261.62055 NaN NaN NaN NaN NaN NaN NaN 77.795 1 77.312 76.812 77.812 -0.4826 0 0 0 0.84564 1 42591 42591 2.0598 0.21551 1 + 25446 27807 17225 17557 30060 30060 0.00020717299139505485 IYMPMIPEL 9 2 Oxidation (M) _IYM(Oxidation (M))PM(Oxidation (M))IPEL_ IYM(1)PM(1)IPEL IYM(43)PM(43)IPEL 0 0 2 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7804565429688 2 569.779779 1137.545 -0.34307 -0.00019548 -0.12965 -7.3871E-05 -0.47272 -0.00026935 569.7801271594208 77.416 0.73535 76.933 76.454 77.189 -0.4826 94 34 5 0 0 0 0.058206 2 42263 42263;42367 42.968 42.968 1 2621900 25447 4295 17226 17558 30061;30062 30061 768;769 -0.018266279434101307 IYMPMIPEL 9 2 Oxidation (M) _IYM(Oxidation (M))PM(Oxidation (M))IPEL_ IYM(1)PM(1)IPEL IYM(43)PM(43)IPEL 0 0 2 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2813110351562 2 569.779779 1137.545 0.19072 0.00010867 0.70225 0.00040013 0.89297 0.0005088 569.7806745607518 76.751 0.67932 76.801 76.494 77.173 0.05011 62 28 3 0 0 0 0.058206 1 42378 42378 42.968 34.375 1 3798800 25448 4295 17226 17558 30063 30063 768;769 -0.018266279434101307 IYMPMIPEL 9 Oxidation (M) _IYMPM(Oxidation (M))IPEL_ IYM(0.107)PM(0.893)IPEL IYM(-9.2)PM(9.2)IPEL 0 0 1 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.781982421875 2 561.782321 1121.55009 0.99418 0.00055852 0.21608 0.00012139 1.2103 0.00067991 561.7825086280197 99.54 0.21281 93.364 93.261 93.474 -6.1757 37 13 4 0 0 0 0.040472 1 66304 66304 49.669 31.534 2 95437000 25449 4295 17226 17559 30064 30064 768;769 -0.005823240808240371 IYMPMIPEL 9 Unmodified _IYMPMIPEL_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7855834960938 2 553.784864 1105.55518 1.3073 0.00072398 -0.42422 -0.00023493 0.88311 0.00048906 553.7845380212482 101.11 0.1244 94.931 94.85 94.974 -6.1757 18 6 3 0 0 0 0.058206 1 67806 67806 42.968 22.514 1 144790000 25450 4295 17226 17560 30065 30065 0.0066197978180753125 IYMQVCLYV 9 Unmodified _IYMQVCLYV_ 0 0 0 REV__ENST00000371361.3_1_10:96093866-96093926:-|nuORF REV__ENST00000371361.3_1_10:96093866-96093926:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3269653320312 2 566.282489 1130.55042 1.3658 0.00077342 -3.2004 -0.0018123 -1.8346 -0.0010389 566.7813723135214 82.516 0.28757 82.578 82.5 82.788 0.061996 12 10 2 0 0 0 0.18941 1 45715 45715 9.3474 0.75416 1 3927000 + 25451 26080 17227 17561 30066 30066 -0.009629043609720611 IYMTEWLEF 9 Unmodified _IYMTEWLEF_ 0 0 0 ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF ENSG00000132664|ENST00000377603|POLR3F ENSG00000132664|ENST00000377603|POLR3F MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2913208007812 2 616.288825 1230.5631 0.87708 0.00054053 -0.12909 -7.9556E-05 0.74799 0.00046098 616.2890127494458 101.28 0.097824 95.103 95.046 95.144 -6.1757 16 5 4 0 0 0 0.032796 1 67927 67927 70.716 47.979 1 58819000 25452 4432 17228 17562 30067 30067 -0.042961696970905905 IYMTFLVF 8 Oxidation (M) _IYM(Oxidation (M))TFLVF_ IYM(1)TFLVF IYM(40)TFLVF 0 0 1 REV__ENSG00000163812|ENST00000424952|ZDHHC3 REV__ENSG00000163812|ENST00000424952|ZDHHC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2724609375 2 525.272447 1048.53034 0.53265 0.00027979 -3.9259 -0.0020622 -3.3932 -0.0017824 525.270768955574 68.066 0.12099 67.583 67.538 67.659 -0.48218 7 5 2 0 0 0 0.44122 1 37219 37219 40.449 21.01 1 1267000 + 25453 21818 17229 17563 30068 30068 1847 0.008016679707452568 IYMYTYVY 8 Unmodified _IYMYTYVY_ 0 0 0 REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2593994140625 2 558.259536 1114.50452 0.87937 0.00049092 -1.9472 -0.001087 -1.0678 -0.00059612 558.2590177107331 73.201 0.39407 72.725 72.519 72.913 -0.47588 57 17 5 0 0 0 0.71616 1 40111 40111 15.768 2.2603 1 6088500 + 25454 26664 17230 17564 30069 30069 -0.04815226271557549 IYNALIEFI 9 Unmodified _IYNALIEFI_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3077392578125 2 548.307875 1094.6012 0.86063 0.00047189 0.21211 0.0001163 1.0727 0.00058819 548.3080545258481 101.39 0.20013 95.217 95.091 95.291 -6.1757 17 10 2 0 0 0 0.078417 1 67997 67997 38.151 15.003 1 17444000 25455 2966 17231 17565 30070 30070 0.05768084279907271 IYNASATSVF 10 Unmodified _IYNASATSVF_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7693481445312 2 536.769114 1071.52368 -0.061849 -3.3199E-05 -0.41326 -0.00022183 -0.47511 -0.00025503 536.7692893696 55.805 0.28628 55.327 55.173 55.459 -0.47798 23 13 2 0 0 0 0.11755 1 30254 30254 43.858 30.816 1 5395000 25456 4039 17232 17566 30071 30071 -0.00922553656278069 IYNASATSVF 10 Unmodified _IYNASATSVF_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.77099609375 2 536.769114 1071.52368 0.6596 0.00035405 0.30711 0.00016485 0.96671 0.0005189 536.7698113351086 63.204 0.36942 57.029 56.857 57.226 -6.1757 38 20 2 0 0 0 0.095098 1 40804 40804 47.749 29.614 1 26845000 25457 4039 17232 17566 30072 30072 -0.00922553656278069 IYNDTKLYL 9 Unmodified _IYNDTKLYL_ 0 0 0 REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8075561523438 2 571.808239 1141.60193 0.83748 0.00047888 -0.99544 -0.0005692 -0.15796 -9.0325E-05 571.8080734714456 49.453 0.27589 49.061 48.922 49.198 -0.3923 28 13 3 0 0 0 0.028475 1 26571 26571 56.177 6.244 1 7086900 + 25458 16724 17233 17567 30073 30073 0.036788789289630586 IYNDTKLYL 9 Unmodified _IYNDTKLYL_ 0 0 0 REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8091430664062 2 571.808239 1141.60193 1.1951 0.00068337 -1.4087 -0.00080548 -0.21355 -0.00012211 571.8072138964402 55.044 0.37844 49.123 48.921 49.3 -5.9211 50 23 3 0 0 0 0.013041 1 34920 34920 71.922 6.6873 1 36278000 + 25459 16724 17233 17567 30074 30074 0.036788789289630586 IYNDTKLYL 9 Unmodified _IYNDTKLYL_ 0 0 0 REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.808239 1141.60193 0.83748 0.00047888 -0.99544 -0.0005692 -0.15796 -9.0325E-05 571.8080734714456 49.453 0.27589 49.061 48.922 49.198 -0.3923 -0.014903 0.00031885 NaN 71.922 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7086900 + 25460 16724 17233 17567 0.036788789289630586 IYNDTKLYL 9 Unmodified _IYNDTKLYL_ 0 0 0 REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.808239 1141.60193 0.29099 0.00016639 -0.85609 -0.00048952 -0.5651 -0.00032313 571.8082148392983 49.088 0.18824 49.044 48.946 49.134 -0.04369 -0.031901 0.00047821 NaN 71.922 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1163300 + 25461 16724 17233 17567 0.036788789289630586 IYNDTKLYL 9 Unmodified _IYNDTKLYL_ 0 0 0 REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant REV__AMPD1|p.K673Ifs*4|1|0.73|ENSG00000116748|chr1:114673945-114673964|CAGTGAGATCATTAGCCCTT/-|frameshift_variant MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 571.808239 1141.60193 1.1951 0.00068337 -1.4087 -0.00080548 -0.21355 -0.00012211 571.8072138964402 55.044 0.37844 49.123 48.921 49.3 -5.9211 0.046804 -0.00015371 NaN 71.922 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 36278000 + 25462 16724 17233 17567 0.036788789289630586 IYNEKQGDVQF 11 Unmodified _IYNEKQGDVQF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.8284912109375 2 670.827692 1339.64083 -0.067443 -4.5243E-05 0.12213 8.1929E-05 0.054687 3.6686E-05 670.8277087722471 37.363 0.19949 37.363 37.259 37.458 0 26 10 3 0 0 0 0.00029288 1 19858 19858 90.964 43.37 1 6080500 25463 5129 17234 17568 30075 30075 -0.015404405073468297 IYNEKQGDVQF 11 Unmodified _IYNEKQGDVQF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MSMS AL20221201_MKP_PDAC_01 4 670.826904296875 2 670.827692 1339.64083 NaN NaN NaN NaN NaN NaN NaN 42.531 1 37.846 37.346 38.346 -4.6846 0 0 0 0.023333 1 25706 25706 70.929 28.834 1 25464 5129 17234 17568 30076 30076 -0.015404405073468297 IYNETITDLL 10 Unmodified _IYNETITDLL_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.817138671875 2 597.816261 1193.61797 0.56294 0.00033653 -0.089043 -5.3231E-05 0.4739 0.0002833 597.8163049386293 84.451 0.30025 83.951 83.775 84.076 -0.49961 32 13 3 0 0 0 0.42068 2 46176 46176;46270 20.454 6.5476 1 2485800 25465 5105 17235 17569 30077;30078 30077 0.02890540375187811 IYNETVRDLL 10 Unmodified _IYNETVRDLL_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8367309570312 2 618.335153 1234.65575 0.39073 0.0002416 0.32787 0.00020273 0.7186 0.00044433 618.3353166571494 59.327 0.26089 58.836 58.707 58.968 -0.49079 26 11 3 0 0 0 0.052718 1 32253 32253 57.249 13.477 1 3344300 25466 10655 17236 17570 30079 30079 0.04781051360669153 IYNETVRDLL 10 Unmodified _IYNETVRDLL_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 618.335153 1234.65575 0.37268 0.00023044 -0.34304 -0.00021212 0.029641 1.8328E-05 618.3348694725515 58.84 0.19667 58.84 58.748 58.945 0 0.0093465 -0.00068713 NaN 57.249 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1559300 25467 10655 17236 17570 0.04781051360669153 IYNETVRDLL 10 Unmodified _IYNETVRDLL_ 0 0 0 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 ENSG00000237649|ENST00000428849|KIFC1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 618.335153 1234.65575 0.5743 0.00035511 0.64899 0.0004013 1.2233 0.00075641 618.3352046239766 64.991 0.23009 58.816 58.752 58.982 -6.1757 -0.014704 0.0005397 NaN 57.249 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 7128100 25468 10655 17236 17570 0.04781051360669153 IYNEVLRDLL 10 Unmodified _IYNEVLRDLL_ 0 0 0 nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3;nc|ENSG00000140859|Q9BVG8-4|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.35400390625 2 624.353345 1246.69214 1.2362 0.00077184 -0.058668 -3.6629E-05 1.1776 0.00073522 624.3532487695853 97.521 0.087631 91.345 91.279 91.366 -6.1757 6 4 2 0 0 0 0.053349 1 64639 64639 57.108 6.2526 1 13410000 25469 5277 17237 17571 30080 30080 0.0786592825736534 IYNFCNSVR 9 Unmodified _IYNFCNSVR_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.5146179199219 3 372.514931 1114.52296 -0.24619 -9.1708E-05 -0.07063 -2.6311E-05 -0.31682 -0.00011802 372.5147922612103 48.896 0.26204 48.896 48.761 49.023 0 27 12 3 0 0 0 0.51218 1 26884 26884 4.1895 0.60244 1 8952000 25470 14031 17238 17572 30081 30081 -0.02971671576983681 IYNFEAKLNL 10 Unmodified _IYNFEAKLNL_ 0 0 0 REV__ENST00000565246.6_2_16:70260671-70260800:-|nuORF REV__ENST00000565246.6_2_16:70260671-70260800:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8919067382812 3 408.892284 1223.65502 0.20423 8.351E-05 0.28074 0.00011479 0.48497 0.0001983 408.89253905131346 40.544 0.22622 40.55 40.424 40.65 0.0050545 24 10 3 0 0 0 0.63089 1 21604 21604 9.544 2.0669 1 3978700 + 25471 28909 17239 17573 30082 30082 0.052142567116106875 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2922973632812 2 561.292559 1120.57057 NaN NaN NaN NaN NaN NaN NaN 75.502 1 75.025 74.525 75.525 -0.47714 0 0 0 0.54015 1 41332 41332 14.582 5.2343 1 25472 10041 17240 17574 30083 30083 0.01510350685521189 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2931518554688 2 561.292559 1120.57057 0.6909 0.0003878 -0.022141 -1.2428E-05 0.66876 0.00037537 561.2924701207595 74.967 0.4093 75.013 74.793 75.203 0.045959 60 19 4 0 0 0 0.0089973 2 41256 41256;41360 86.121 51.934 1 56577000 25473 10041 17240 17574 30084;30085 30084 0.01510350685521189 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2918701171875 2 561.292559 1120.57057 1.3931 0.00078191 -0.7305 -0.00041003 0.66255 0.00037189 561.2922305072303 89.28 0.7301 83.104 82.796 83.526 -6.1757 109 40 3 0 0 0 0.016494 3 59005 58763;58882;59005 67.035 37.954 1 84035000 25474 10041 17240 17574 30086;30087;30088 30088 0.01510350685521189 IYNFPIHAF 9 Unmodified _IYNFPIHAF_ 0 0 0 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 ENSG00000198042|ENST00000360128|MAK16 MSMS AL20221201_MKP_PDAC_01 4 561.3009033203125 2 561.292559 1120.57057 NaN NaN NaN NaN NaN NaN NaN 85.573 1 79.398 78.898 79.898 -6.1757 0 0 0 0.43505 1 56367 56367 18.135 2.2878 1 25475 10041 17240 17574 30089 30089 0.01510350685521189 IYNGETLVF 9 Unmodified _IYNGETLVF_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2756958007812 2 528.274032 1054.53351 0.54134 0.00028598 1.6243 0.00085806 2.1656 0.001144 528.274705366345 72.558 0.43838 72.082 71.834 72.272 -0.47609 59 20 4 0 0 0 0.12841 2 39636 39636;39739 30.225 12.09 1 12027000 25476 3184 17241 17575 30090;30091 30090 0.008426343491009902 IYNGETLVF 9 Unmodified _IYNGETLVF_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2744750976562 2 528.274032 1054.53351 1.3345 0.00070496 0.52821 0.00027904 1.8627 0.000984 528.274377930355 79.667 0.57916 73.491 73.148 73.727 -6.1757 81 34 3 0 0 0 0.095405 3 52105 52105;52239;52370 34.102 15.967 1 61971000 25477 3184 17241 17575 30092;30093;30094 30092 0.008426343491009902 IYNGETLVF 9 Unmodified _IYNGETLVF_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1055.543701171875 1 1055.54079 1054.53351 1.1207 0.0011829 1.2345 0.0013031 2.3552 0.002486 1055.5413986729582 79.659 0.34013 73.483 73.286 73.626 -6.1757 34 20 2 0 0 0 0.0090948 1 52131 52131 85.272 6.544 1 14414000 25478 3184 17241 17575 30095 30095 0.008426343491009902 IYNGFSSVLQF 11 Unmodified _IYNGFSSVLQF_ 0 0 0 ENSG00000079332|ENST00000373241|SAR1A;ENST00000477464.1_1_10:71921354-71921671:-|nuORF ENSG00000079332|ENST00000373241|SAR1A ENSG00000079332|ENST00000373241|SAR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.825439453125 2 637.824421 1273.63429 1.7564 0.0011203 0.22856 0.00014578 1.9849 0.001266 637.8243003482594 92.984 0.19366 93.007 92.938 93.132 0.022987 12 7 2 0 0 0 0.6249 1 51729 51729 10.074 2.7847 1 1721200 25479 1272 17242 17576 30096 30096 0.008416663319394502 IYNGKLFDL 9 Unmodified _IYNGKLFDL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.798583984375 2 541.797675 1081.5808 0.59139 0.00032041 -0.40266 -0.00021816 0.18873 0.00010225 541.7982168721426 67.032 0.27878 67.05 66.939 67.218 0.018028 34 13 3 0 0 0 0.017075 1 36774 36774 66.457 22.598 1 6333100 25480 5453 17243 17577 30097 30097 0.04326913620070627 IYNGKLFDLL 10 Unmodified _IYNGKLFDLL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8411254882812 2 598.339707 1194.66486 0.55245 0.00033056 -0.32767 -0.00019606 0.22478 0.0001345 598.3393465977186 84.848 0.30444 84.347 84.156 84.461 -0.50092 27 12 3 0 0 0 0.35903 1 46402 46402 24.021 2.2739 1 1118500 25481 5453 17244 17578 30098 30098 0.0753144471698306 IYNGKLFDLL 10 Unmodified _IYNGKLFDLL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3396606445312 2 598.339707 1194.66486 -0.28527 -0.00017069 0.16661 9.969E-05 -0.11866 -7.0999E-05 598.339964945853 84.215 0.29911 84.278 84.118 84.417 0.063171 28 12 3 0 0 0 8.3247E-06 1 46563 46563 128.93 66.36 1 54573000 25482 5453 17244 17578 30099 30099 0.0753144471698306 IYNGKLFDLL 10 Unmodified _IYNGKLFDLL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.341064453125 2 598.339707 1194.66486 -0.11197 -6.6996E-05 0.844 0.000505 0.73203 0.000438 598.3401438868098 98.702 0.18713 92.526 92.427 92.615 -6.1757 43 13 4 0 0 0 4.6694E-07 1 65470 65470 136.39 73.819 1 469770000 25483 5453 17244 17578 30100 30100 0.0753144471698306 IYNGKVTSI 9 Unmodified _IYNGKVTSI_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7820129394531 2 497.782025 993.549496 -0.37693 -0.00018763 0.70901 0.00035293 0.33208 0.0001653 497.78231069991693 33.886 0.20456 33.886 33.765 33.97 0 28 9 4 0 0 0 0.014417 1 17776 17776 69.105 8.7154 1 8414900 25484 960 17245 17579 30101 30101 0.052463405860066814 IYNGKVTSI 9 Unmodified _IYNGKVTSI_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7832946777344 2 497.782025 993.549496 0.47677 0.00023733 1.0336 0.0005145 1.5103 0.00075182 497.7825176041403 38.51 0.38445 34.141 33.964 34.348 -4.3689 64 24 3 0 0 0 0.0082548 1 22645 22645 96.367 3.8751 1 105560000 25485 960 17245 17579 30102 30102 0.052463405860066814 IYNGKVTSI 9 Unmodified _IYNGKVTSI_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.782025 993.549496 -0.31307 -0.00015584 2.0851 0.0010379 1.772 0.00088209 497.7830122168156 34.024 0.43456 33.833 33.563 33.998 -0.19131 -0.085761 0.00096585 NaN 96.367 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 9905300 25486 960 17245 17579 0.052463405860066814 IYNGKVTSI 9 Unmodified _IYNGKVTSI_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.782025 993.549496 0.20307 0.00010108 2.2436 0.0011168 2.4467 0.0012179 497.78290347185975 33.786 0.2088 33.815 33.672 33.881 0.028934 -0.10366 0.0011236 NaN 96.367 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1533600 25487 960 17245 17579 0.052463405860066814 IYNGQLFNNL 10 Unmodified _IYNGQLFNNL_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3084106445312 2 598.308938 1194.60332 0.63353 0.00037904 -1.3471 -0.00080599 -0.71359 -0.00042695 598.3080893946958 72.179 0.43383 71.703 71.525 71.959 -0.47609 50 19 3 0 0 0 0.14917 1 39462 39462 39.957 19.504 1 3585800 25488 7358 17246 17580 30103 30103 0.013805130177161118 IYNGQLFNNL 10 Unmodified _IYNGQLFNNL_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3097534179688 2 598.308938 1194.60332 0.52326 0.00031307 0.096758 5.7891E-05 0.62002 0.00037096 598.3089494826809 71.683 0.54495 71.722 71.49 72.035 0.039024 92 25 5 0 0 0 0.043729 1 39427 39427 61.357 35.958 1 16171000 25489 7358 17246 17580 30104 30104 0.013805130177161118 IYNGQLFNNL 10 Unmodified _IYNGQLFNNL_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.309814453125 2 598.308938 1194.60332 0.84067 0.00050298 -0.030486 -1.824E-05 0.81018 0.00048474 598.308857800931 79.589 0.50898 73.413 73.117 73.626 -6.1757 70 30 3 0 0 0 0.043729 2 52048 52048;52179 61.357 40.904 1 54163000 25490 7358 17246 17580 30105;30106 30105 0.013805130177161118 IYNHITTRV 9 Unmodified _IYNHITTRV_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2109985351562 3 372.876857 1115.60874 0.20807 7.7586E-05 -0.54407 -0.00020287 -0.336 -0.00012529 372.8767562964228 27.036 0.13521 27.065 27.002 27.137 0.028664 12 6 2 0 0 0 0.062454 1 14047 14047 39.213 11.584 1 10914000 25491 1464 17247 17581 30107 30107 0.055562366001595365 IYNHITTRV 9 Unmodified _IYNHITTRV_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.877197265625 3 372.876857 1115.60874 1.6805 0.00062661 -0.61596 -0.00022968 1.0645 0.00039693 372.8765761172493 30.605 0.42819 27.108 26.915 27.343 -3.497 52 20 3 0 0 0 0.091924 2 17361 17250;17361 27.088 12.683 1 126000000 25492 1464 17247 17581 30108;30109 30109 0.055562366001595365 IYNHITTRV 9 Unmodified _IYNHITTRV_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.813232421875 2 558.811648 1115.60874 1.2873 0.00071935 -0.36584 -0.00020443 0.92146 0.00051492 558.8117963690817 30.633 0.30263 27.136 26.975 27.277 -3.497 26 14 2 0 0 0 0.0085386 1 17273 17273 100.09 54.351 1 28196000 25493 1464 17247 17581 30110 30110 0.055562366001595365 IYNISEYSL 9 Unmodified _IYNISEYSL_ 0 0 0 REV__ENST00000566154.1_1_15:43643891-43644140:+|nuORF REV__ENST00000566154.1_1_15:43643891-43644140:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.854248046875 3 367.853607 1100.53899 -0.045063 -1.6577E-05 1.9637 0.00072235 1.9186 0.00070577 367.85421707686055 39.406 0.18747 39.109 39.01 39.197 -0.29716 11 8 2 0 0 0 0.49272 1 20811 20811 4.897 0.70751 1 1741700 + 25494 22346 17248 17582 30111 30111 -0.0072568685909573105 IYNKIKQII 9 Unmodified _IYNKIKQII_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2410583496094 3 378.241137 1131.70158 -0.2411 -9.1195E-05 0.20745 7.8467E-05 -0.033649 -1.2727E-05 378.2411765784444 41.605 0.27697 41.603 41.444 41.721 -0.0017929 29 12 3 0 0 0 0.012668 1 22202 22202 72.968 37.356 1 34548000 25495 1346 17249 17583 30112 30112 0.14099741333575366 IYNKIKQII 9 Unmodified _IYNKIKQII_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8583374023438 2 566.858067 1131.70158 -0.014736 -8.353E-06 0.49006 0.00027779 0.47532 0.00026944 566.8582758969077 41.607 0.18895 41.605 41.491 41.68 -0.0017929 17 8 3 0 0 0 0.0093064 1 22228 22228 92.491 40.223 1 8557900 25496 1346 17249 17583 30113 30113 0.14099741333575366 IYNKIKQII 9 Unmodified _IYNKIKQII_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2416687011719 3 378.241137 1131.70158 1.0135 0.00038335 0.22882 8.6548E-05 1.2423 0.0004699 378.24118689808114 46.228 0.39118 41.273 41.08 41.471 -4.9549 69 26 3 0 0 0 0.040683 2 28440 28440;28580 49.554 19.714 1 71220000 25497 1346 17249 17583 30114;30115 30114 0.14099741333575366 IYNKIKQII 9 Unmodified _IYNKIKQII_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.85888671875 2 566.858067 1131.70158 0.67579 0.00038308 -0.052102 -2.9534E-05 0.62369 0.00035354 566.8581699890065 46.235 0.31153 41.281 41.104 41.415 -4.9549 36 20 2 0 0 0 0.0086209 1 28466 28466 88.904 31.432 1 24848000 25498 1346 17249 17583 30116 30116 0.14099741333575366 IYNKIKQII 9 Unmodified _IYNKIKQII_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20221201_MKP_PDAC_01 4 378.2415466308594 3 378.241137 1131.70158 NaN NaN NaN NaN NaN NaN NaN 65.01 1 58.834 58.334 59.334 -6.1757 0 0 0 0.27852 1 42166 42166 26.268 10.119 1 25499 1346 17249 17583 30117 30117 0.14099741333575366 IYNKVTPTF 9 Unmodified _IYNKVTPTF_ 0 0 0 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.798828125 2 541.797675 1081.5808 1.0804 0.00058536 -0.04034 -2.1856E-05 1.0401 0.0005635 541.7977689463587 49.584 0.37209 44.045 43.846 44.218 -5.5391 41 23 2 0 0 0 8.2399E-06 2 30930 30930;31059 155.03 83.104 1 50147000 25500 7429 17250 17584 30118;30119 30118 0.04326913620070627 IYNKYWPLF 9 Unmodified _IYNKYWPLF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3287963867188 2 622.329142 1242.64373 0.52834 0.0003288 0.57195 0.00035594 1.1003 0.00068475 622.3295822418793 98.592 0.1851 92.416 92.308 92.493 -6.1757 27 13 3 0 0 0 0.0087873 1 65384 65384 117.6 81.472 1 86770000 25501 2220 17251 17585 30120 30120 0.03211479408105333 IYNPNNRIL 9 Unmodified _IYNPNNRIL_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8763427734375 3 372.876857 1115.60874 0.45378 0.0001692 -0.88648 -0.00033055 -0.4327 -0.00016134 372.87649515309215 27.161 0.15103 27.129 27.069 27.22 -0.031708 12 7 2 0 0 0 0.2001 1 14001 14001 21.537 3.6738 1 20981000 + 25502 22951 17252 17586 30121 30121 0.05556236600182274 IYNPSMGVSVL 11 Unmodified _IYNPSMGVSVL_ 0 0 0 ENST00000524510.1_1_11:119547810-119558018:-|nuORF;nc|ENSG00000110400|Q15223-3|NECTIN1;nc|ENSG00000110400|Q15223-2|NECTIN1;ENSG00000110400|ENST00000264025|NECTIN1 ENST00000524510.1_1_11:119547810-119558018:-|nuORF ENST00000524510.1_1_11:119547810-119558018:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3076171875 2 590.307549 1178.60055 0.72339 0.00042702 -2.018 -0.0011912 -1.2946 -0.00076423 590.3058396791345 80.253 0.23039 74.077 73.989 74.22 -6.1757 26 13 3 0 0 0 0.30985 1 52629 52629 26.268 12.362 1 15709000 25503 2717 17253 17587 30122 30122 0.018389215685601812 IYNPTTGEF 9 Unmodified _IYNPTTGEF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1041.05517578125 1 1041.48875 1040.48148 0.1651 0.00017195 -0.51366 -0.00053497 -0.34856 -0.00036302 1041.4879248110617 51.217 0.26241 51.217 51.085 51.348 0 21 11 2 0 0 0 0.08691 1 28224 28224 36.127 9.2434 1 6668700 25504 1007 17254 17588 30123 30123 -0.03714529064677663 IYNPTTGEF 9 Unmodified _IYNPTTGEF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2484741210938 2 521.248015 1040.48148 1.0428 0.00054356 -1.0395 -0.00054182 0.0033377 1.7398E-06 521.2478954355297 59.381 0.47561 53.266 53.06 53.536 -6.1147 67 25 3 0 0 0 0.16226 1 38065 38065 26.884 1.4843 1 77041000 25505 1007 17254 17588 30124 30124 -0.03714529064677663 IYNQIAELW 9 Unmodified _IYNQIAELW_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3018188476562 2 575.300581 1148.58661 1.2349 0.00071043 0.50322 0.0002895 1.7381 0.00099993 575.3008357891014 94.509 0.78272 88.333 87.947 88.73 -6.1757 126 45 3 0 0 0 0.012148 4 62440 62440;62564;62693;62831 74.423 32.328 1 33547000 25506 4257 17255 17589 30125;30126;30127;30128 30125 0.018260121317553057 IYNQLDEFI 9 Unmodified _IYNQLDEFI_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.761962890625 2 577.790047 1153.56554 0.41411 0.00023927 -0.45409 -0.00026237 -0.039975 -2.3097E-05 577.7898331217327 68.661 0.34508 68.18 68.031 68.376 -0.48071 43 15 3 0 0 0 0.19613 1 37609 37609 12.532 1.7076 1 8592700 + 25507 19519 17256 17590 30129 30129 -0.0050999796776523 IYNQLDEFI 9 Unmodified _IYNQLDEFI_ 0 0 0 REV__ENSG00000125827|ENST00000246024|TMX4 REV__ENSG00000125827|ENST00000246024|TMX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.79052734375 2 577.790047 1153.56554 0.8035 0.00046426 -0.13124 -7.5831E-05 0.67226 0.00038843 577.7898043495851 76.08 0.53035 69.904 69.634 70.164 -6.1757 48 28 2 0 0 0 0.06294 1 49823 49823 41.84 1.8899 1 34261000 + 25508 19519 17256 17590 30130 30130 -0.0050999796776523 IYNQLNSG 8 Unmodified _IYNQLNSG_ 0 0 0 REV__ENSG00000173157|ENST00000389420|ADAMTS20 REV__ENSG00000173157|ENST00000389420|ADAMTS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7301025390625 2 454.727249 907.439946 0.93461 0.00042499 1.1087 0.00050417 2.0433 0.00092916 454.7291349095981 91.329 0.85789 85.154 84.755 85.612 -6.1757 61 48 2 0 0 0 0.63229 1 60382 60382 23.148 6.2061 1 5659700 + 25509 22707 17257 17591 30131 30131 -0.01747665033337853 IYNQVKQII 9 Unmodified _IYNQVKQII_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.832763671875 2 559.832049 1117.64954 0.80604 0.00045125 0.16222 9.0814E-05 0.96825 0.00054206 559.8320486298164 47.664 0.24392 47.311 47.165 47.409 -0.3526 28 11 3 0 0 0 0.0055767 1 25532 25532 115.69 41.269 1 8455300 25510 1168 17258 17592 30132 30132 0.09542577919796713 IYNQVKQII 9 Unmodified _IYNQVKQII_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8331298828125 2 559.832049 1117.64954 1.1384 0.00063733 0.4548 0.00025461 1.5932 0.00089195 559.8322446399334 47.37 0.28048 47.331 47.197 47.477 -0.038643 34 12 3 0 0 0 0.008678 2 25489 25489;25600 88.904 24.667 1 10993000 25511 1168 17258 17592 30133;30134 30133 0.09542577919796713 IYNQVKQII 9 Unmodified _IYNQVKQII_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8325805664062 2 559.832049 1117.64954 0.75604 0.00042326 0.30471 0.00017059 1.0608 0.00059384 559.8320796979633 53.242 0.37672 47.437 47.251 47.628 -5.8042 42 23 2 0 0 0 0.0036082 2 33574 33574;33694 123.45 41.838 1 60675000 25512 1168 17258 17592 30135;30136 30135 0.09542577919796713 IYNQVNVVL 9 Unmodified _IYNQVNVVL_ 0 0 0 ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF ENSG00000153310|ENST00000694912|CYRIB ENSG00000153310|ENST00000694912|CYRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3035278320312 2 531.303124 1060.5917 0.16658 8.8504E-05 0.82091 0.00043615 0.98749 0.00052466 531.3035113092232 65.302 0.42542 64.817 64.616 65.041 -0.48428 36 19 2 0 0 0 0.032796 1 35667 35667 60.39 24.263 1 7884400 25513 6258 17259 17593 30137 30137 0.06382315994369492 IYNQVNVVL 9 Unmodified _IYNQVNVVL_ 0 0 0 ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF ENSG00000153310|ENST00000694912|CYRIB ENSG00000153310|ENST00000694912|CYRIB MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3027954101562 2 531.303124 1060.5917 1.1382 0.00060475 -0.21717 -0.00011538 0.92107 0.00048937 531.3028984472598 71.559 0.42645 65.384 65.111 65.537 -6.1757 55 21 3 0 0 0 0.032796 2 46674 46674;46792 60.39 30.165 1 84445000 25514 6258 17259 17593 30138;30139 30138 0.06382315994369492 IYNQVNVVL 9 Unmodified _IYNQVNVVL_ 0 0 0 ENSG00000153310|ENST00000694912|CYRIB;ENST00000523288.5_1_8:130864395-130891707:-|nuORF ENSG00000153310|ENST00000694912|CYRIB ENSG00000153310|ENST00000694912|CYRIB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.303124 1060.5917 0.73722 0.00039169 2.1176 0.0011251 2.8548 0.0015168 531.3039777403262 64.604 0.097733 64.594 64.548 64.646 -0.010536 -0.11168 0.0010647 NaN 60.39 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 415310 25515 6258 17259 17593 0.06382315994369492 IYNRDFKISF 10 Unmodified _IYNRDFKISF_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8996276855469 3 434.89955 1301.67682 0.19718 8.5753E-05 -0.029591 -1.2869E-05 0.16759 7.2884E-05 434.8994580395881 55.37 0.33874 55.301 55.117 55.456 -0.068737 54 16 4 0 0 0 0.38026 1 30083 30083 22.775 11.876 1 22639000 25516 6383 17260 17594 30140 30140 0.038050614601843336 IYNRINNDL 9 Unmodified _IYNRINNDL_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7991333007812 2 567.798737 1133.58292 -0.22907 -0.00013007 0.98256 0.00055789 0.75348 0.00042783 567.7990646155355 35.125 0.28736 35.125 34.977 35.265 0 43 14 4 0 0 0 0.012228 1 18510 18510 92.491 50.652 1 13222000 25517 2693 17261 17595 30141 30141 0.021473423578981965 IYNRINNDL 9 Unmodified _IYNRINNDL_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7975463867188 2 567.798737 1133.58292 NaN NaN NaN NaN NaN NaN NaN 35.228 1 35.006 34.506 35.506 -0.2224 0 0 0 0.10415 1 18440 18440 53.833 23.196 1 25518 2693 17261 17595 30142 30142 0.021473423578981965 IYNRINNDL 9 Unmodified _IYNRINNDL_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.799072265625 2 567.798737 1133.58292 0.37408 0.0002124 1.2771 0.00072512 1.6511 0.00093752 567.799145776878 39.878 0.30064 35.349 35.203 35.503 -4.5294 44 21 3 0 0 0 0.014763 1 23703 23703 83.429 43.19 1 36567000 25519 2693 17261 17595 30143 30143 0.021473423578981965 IYNRKSVLL 9 Unmodified _IYNRKSVLL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2292175292969 3 369.229119 1104.66553 0.084168 3.1077E-05 0.23199 8.5658E-05 0.31616 0.00011673 369.2291545677322 33.936 0.28681 33.965 33.816 34.103 0.028931 27 12 3 0 0 0 0.078314 1 17861 17861 38.176 38.176 1 4899100 25520 6002 17262 17596 30144 30144 0.11738284156717782 IYNRKSVLL 9 Unmodified _IYNRKSVLL_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2301635742188 3 369.229119 1104.66553 1.6811 0.00062071 -0.085512 -3.1573E-05 1.5956 0.00058913 369.22895858839854 37.972 0.38503 33.603 33.348 33.733 -4.3689 46 22 3 0 0 0 0.091924 1 22283 22283 34.932 34.932 1 18255000 25521 6002 17262 17596 30145 30145 0.11738284156717782 IYNRSQPVL 9 Unmodified _IYNRSQPVL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3057861328125 2 545.306198 1088.59784 -0.46468 -0.00025339 0.066694 3.6369E-05 -0.39798 -0.00021702 545.3061245965575 34.439 0.23397 34.439 34.326 34.56 0 28 11 3 0 0 0 0.11784 1 18155 18155 31.268 9.7314 1 9442700 25522 9914 17263 17597 30146 30146 0.057088342259021374 IYNRSQPVL 9 Unmodified _IYNRSQPVL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3057861328125 2 545.306198 1088.59784 -0.47619 -0.00025967 0.21716 0.00011842 -0.25903 -0.00014125 545.3062932332855 34.585 0.49546 34.394 34.226 34.722 -0.19131 74 22 4 0 0 0 0.078314 1 18056 18056 38.176 21.063 1 53113000 25523 9914 17263 17597 30147 30147 0.057088342259021374 IYNRSQPVL 9 Unmodified _IYNRSQPVL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3065795898438 2 545.306198 1088.59784 0.12947 7.06E-05 0.090255 4.9217E-05 0.21972 0.00011982 545.3062642339672 34.386 0.46484 34.413 34.184 34.648 0.027401 47 21 3 0 0 0 0.078314 1 18125 18125 38.176 21.063 1 10382000 25524 9914 17263 17597 30148 30148 0.057088342259021374 IYNRSQPVL 9 Unmodified _IYNRSQPVL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;ENST00000496328.1_1_10:114181742-114186129:+|nuORF nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3065795898438 2 545.306198 1088.59784 0.24875 0.00013565 0.22097 0.0001205 0.46973 0.00025614 545.3063240388888 38.685 0.55792 34.235 33.948 34.506 -4.4509 105 35 4 0 0 0 0.013041 3 22880 22746;22880;23005 71.922 42.841 1 274820000 25525 9914 17263 17597 30149;30150;30151 30150 0.057088342259021374 IYNSQREHF 9 Unmodified _IYNSQREHF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5284118652344 3 398.528117 1192.56252 0.25097 0.00010002 0.87722 0.0003496 1.1282 0.00044962 398.528447340969 23.215 0.54074 20.437 20.031 20.572 -2.7784 81 43 2 0 0 0 0.044011 1 12515 12515 43.982 43.982 1 28812000 25526 9967 17264 17598 30152 30152 -0.026058283018983275 IYNSQREHF 9 Unmodified _IYNSQREHF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 398.528117 1192.56252 -0.46677 -0.00018602 1.249 0.00049777 0.78224 0.00031175 398.52878247131036 20.834 0.48509 20.834 20.425 20.91 0 0.15625 0.00028958 NaN 43.982 85 55 3 NaN NaN NaN NaN 0 NaN NaN 0 5008400 25527 9967 17264 17598 -0.026058283018983275 IYNSQREHF 9 Unmodified _IYNSQREHF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 398.528117 1192.56252 -0.30911 -0.00012319 0.57284 0.00022829 0.26373 0.00010511 398.52821964562594 20.734 0.21915 20.762 20.622 20.841 0.028355 0.084626 -0.00051884 NaN 43.982 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1214600 25528 9967 17264 17598 -0.026058283018983275 IYNSRPMRL 9 Unmodified _IYNSRPMRL_ 0 0 0 nc|ENSG00000157693|Q5VZI3-2|TMEM268;ENSG00000157693|ENST00000288502|TMEM268;nc|ENSG00000157693|Q5VZI3-3|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 nc|ENSG00000157693|Q5VZI3-2|TMEM268 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.87744140625 3 383.878092 1148.61245 1.8583 0.00071337 -1.4051 -0.00053938 0.45325 0.00017399 383.8773881572471 33.898 0.42125 29.912 29.676 30.097 -3.9853 43 22 3 0 0 0 0.34999 1 19420 19420 24.991 13.473 1 12627000 25529 6535 17265 17599 30153 30153 0.04408583102394914 IYNWDPKHTRG 11 Unmodified _IYNWDPKHTRG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.84912109375 2 693.849293 1385.68403 0.63037 0.00043738 -1.0858 -0.00075338 -0.45543 -0.000316 693.8483912995745 62.403 0.37708 61.915 61.704 62.081 -0.48764 57 17 4 0 0 0 0.5229 1 34049 34049 15.248 0.8431 1 16357000 + 25530 22671 17266 17600 30154 30154 0.006617940605792683 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.791748046875 2 593.792589 1185.57063 0.11423 6.7829E-05 -1.4817 -0.00087983 -1.3675 -0.000812 593.7918984356148 76.493 0.68356 76.013 75.639 76.322 -0.47945 125 37 4 0 0 0 0.047714 2 41890 41792;41890 49.933 36.425 1 22579000 25531 7455 17267 17601 30155;30156 30156 -0.0147369410515239 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.7926635742188 2 593.792589 1185.57063 0.038051 2.2594E-05 -0.46876 -0.00027835 -0.43071 -0.00025575 593.792291616015 76.004 0.26933 76.052 75.864 76.133 0.047943 22 11 3 0 0 0 0.11005 1 41920 41920 41.84 27.934 1 3435400 25532 7455 17267 17601 30157 30157 -0.0147369410515239 IYNYPEQLF 9 Unmodified _IYNYPEQLF_ 0 0 0 nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2 nc|ENSG00000166226|P78371-2|CCT2 nc|ENSG00000166226|P78371-2|CCT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.792724609375 2 593.792589 1185.57063 0.69257 0.00041124 -0.12596 -7.4797E-05 0.56661 0.00033645 593.792670082753 83.717 0.63795 77.541 77.253 77.891 -6.1757 111 33 4 0 0 0 0.026499 3 54954 54954;55073;55201 71.922 58.679 1 101630000 25533 7455 17267 17601 30158;30159;30160 30158 -0.0147369410515239 IYPDLLGLQW 10 Unmodified _IYPDLLGLQW_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8505859375 2 609.331882 1216.64921 0.68083 0.00041485 3.7963 0.0023132 4.4771 0.002728 609.3338884851056 100.77 0.11038 100.73 100.65 100.76 -0.04216 5 3 2 0 0 0 0.42068 1 55986 55986 20.454 11.071 1 1616900 25534 7582 17268 17602 30161 30161 0.04955158199959442 IYPDLLGLQW 10 Unmodified _IYPDLLGLQW_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3326416015625 2 609.331882 1216.64921 0.7595 0.00046279 0.32933 0.00020067 1.0888 0.00066346 609.3322815646089 101.39 0.12883 95.218 95.163 95.291 -6.1757 14 6 3 0 0 0 0.067957 1 68021 68021 53.833 30.043 1 26550000 25535 7582 17268 17602 30162 30162 0.04955158199959442 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1054.494140625 1 1054.54554 1053.53826 0.66576 0.00070208 -0.22737 -0.00023978 0.43839 0.0004623 1054.5450545343149 81.209 0.51007 80.716 80.443 80.953 -0.49247 68 29 3 0 0 0 0.036857 1 44386 44386 67.344 22.937 1 10423000 25536 2832 17269 17603 30163 30163 0.01363518491848481 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.776123046875 2 527.776408 1053.53826 0.70685 0.00037306 -0.86108 -0.00045446 -0.15422 -8.1395E-05 527.7758132225946 81.177 0.66086 80.684 80.356 81.017 -0.49247 110 36 4 0 0 0 0.15471 1 44474 44474 38.151 38.151 1 24075000 25537 2832 17269 17603 30164 30164 0.01363518491848481 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1054.54554 1053.53826 -0.42634 -0.00044959 1.6721 0.0017633 1.2457 0.0013137 1054.5475532560972 80.663 0.36697 80.663 80.544 80.911 0 -0.026716 0.0015002 NaN 67.344 30 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1392700 25538 2832 17269 17603 0.01363518491848481 IYPDSFTVL 9 Unmodified _IYPDSFTVL_ 0 0 0 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 ENSG00000111832|ENST00000466444|RWDD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.776408 1053.53826 0.70685 0.00037306 -0.86108 -0.00045446 -0.15422 -8.1395E-05 527.7758132225946 81.177 0.66086 80.684 80.356 81.017 -0.49247 -0.0038369 -0.00050363 NaN 38.151 110 36 4 NaN NaN NaN NaN 0 NaN NaN 0 24075000 25539 2832 17269 17603 0.01363518491848481 IYPEYRTDL 9 Unmodified _IYPEYRTDL_ 0 0 0 REV__nc|ENSG00000010030|Q9Y603-8|ETV7 REV__nc|ENSG00000010030|Q9Y603-8|ETV7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5341491699219 3 390.532756 1168.57644 1.4235 0.00055592 -0.07029 -2.7451E-05 1.3532 0.00052847 390.53299596426746 89.816 0.35645 83.64 83.418 83.774 -6.1757 43 19 3 0 0 0 0.39863 1 59361 59361 8.1555 2.7528 1 31979000 + 25540 16905 17270 17604 30165 30165 -0.001105955934690428 IYPFLFLGF 9 Unmodified _IYPFLFLGF_ 0 0 0 ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES ENSG00000148344|ENST00000340607|PTGES MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8104248046875 2 558.810054 1115.60555 1.5324 0.00085633 -0.89918 -0.00050247 0.63324 0.00035386 558.8095866403494 102.85 0.065872 96.674 96.639 96.705 -6.1757 48 18 3 0 0 0 0.047696 1 68993 68993 45.75 9.2838 1 10961000 25541 5922 17271 17605 30166 30166 0.05237593493461645 IYPGTFRHL 9 Unmodified _IYPGTFRHL_ 0 0 0 nc|ENSG00000186907|Q86UN3-2|RTN4RL2;ENSG00000186907|ENST00000335099|RTN4RL2 nc|ENSG00000186907|Q86UN3-2|RTN4RL2 nc|ENSG00000186907|Q86UN3-2|RTN4RL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5384826660156 3 368.538064 1102.59236 1.2217 0.00045025 0.75706 0.00027901 1.9788 0.00072925 368.53824978967367 43.854 0.33218 39.089 38.888 39.22 -4.7648 34 20 2 0 0 0 0.019303 1 26659 26659 57.722 27.881 1 11445000 25542 9519 17272 17606 30167 30167 0.04517155434086817 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.8134155273438 2 512.813128 1023.6117 0.60063 0.00030801 0.15171 7.7797E-05 0.75233 0.00038581 512.8131699166393 74.431 0.54054 73.956 73.741 74.281 -0.47588 40 22 2 0 0 0 0.028712 1 40794 40794 56.048 19.582 1 4947400 25543 2023 17273 17607 30168 30168 0.10084111724984268 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.813232421875 2 512.813128 1023.6117 0.56141 0.0002879 0.15429 7.9121E-05 0.71569 0.00036702 512.8130178682749 73.85 0.6227 73.894 73.635 74.258 0.043983 131 28 6 0 0 0 0.016115 3 40727 40621;40727;40837 67.413 30.947 1 179790000 25544 2023 17273 17607 30169;30170;30171 30170 0.10084111724984268 IYPHGLVLL 9 Unmodified _IYPHGLVLL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.813720703125 2 512.813128 1023.6117 1.0138 0.00051987 0.085707 4.3951E-05 1.0995 0.00056382 512.8131735780402 94.052 1.2067 87.877 87.303 88.509 -6.1757 228 70 4 0 0 0 0.01018 5 62174 62043;62174;62296;62425;62551 79.935 34.185 1 244340000 25545 2023 17273 17607 30172;30173;30174;30175;30176 30173 0.10084111724984268 IYPKIGDKL 9 Unmodified _IYPKIGDKL_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8162231445312 2 523.815867 1045.61718 -0.13766 -7.2109E-05 0.1495 7.8311E-05 0.011839 6.2015E-06 523.8160102075301 39.538 0.19722 39.241 39.133 39.33 -0.29716 13 8 2 0 0 0 0.10247 1 20871 20871 32.786 13.529 1 1395400 25546 1568 17274 17608 30177 30177 0.0961979051680828 IYPKIGDKL 9 Unmodified _IYPKIGDKL_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8167724609375 2 523.815867 1045.61718 0.63333 0.00033175 0.97134 0.0005088 1.6047 0.00084055 523.8161623517683 43.987 0.26961 39.222 39.05 39.319 -4.7648 30 17 2 0 0 0 0.085319 1 26810 26810 36.506 11.107 1 12129000 25547 1568 17274 17608 30178 30178 0.0961979051680828 IYPKRLLKN 9 Unmodified _IYPKRLLKN_ 0 0 0 REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF REV__ENST00000328089.10_1_1:9427712-9428249:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2439270019531 3 382.244881 1143.71281 0.54062 0.00020665 -1.2891 -0.00049274 -0.74844 -0.00028609 382.2445343940634 58.618 0.52767 58.557 58.373 58.901 -0.060719 36 26 2 0 0 0 0.43515 1 32023 32023 10.8 2.3552 1 13587000 + 25548 25576 17275 17609 30179 30179 0.14670563427716843 IYPLEYMFPVI 11 Unmodified _IYPLEYMFPVI_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.865966796875 2 692.8647 1383.71485 0.5569 0.00038586 0.65145 0.00045136 1.2083 0.00083722 692.865650545361 102.37 0.059937 96.197 96.158 96.218 -6.1757 11 4 3 0 0 0 0.088077 1 68706 68706 43.858 28.011 1 4038100 25549 2724 17276 17610 30180 30180 0.038338113306053856 IYPLLGATL 9 Unmodified _IYPLLGATL_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 960.5758056640625 1 960.576445 959.569169 0.79343 0.00076215 0.35648 0.00034242 1.1499 0.0011046 960.5763360043766 99.249 0.12225 93.073 92.99 93.113 -6.1757 10 6 2 0 0 0 0.0089973 1 66049 66049 86.121 29.58 1 21312000 25550 4026 17277 17611 30181 30181 0.087767165967648 IYPLLGATL 9 Unmodified _IYPLLGATL_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7921447753906 2 480.791861 959.569169 1.0228 0.00049178 -0.70559 -0.00033924 0.31725 0.00015253 480.7915645738174 99.234 0.18659 93.058 92.957 93.144 -6.1757 15 10 2 0 0 0 0.045537 1 66077 66077 46.921 8.7697 1 19185000 25551 4026 17277 17611 30182 30182 0.087767165967648 IYPMKNHMF 9 Unmodified _IYPMKNHMF_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;THUMPD2-RALGAPA1|1|fusion;THUMPD2-RALGAPA1|2|fusion;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000443361.1_1_9:108287470-108288637:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;ENST00000443361.1_1_9:108287470-108288637:+|nuORF nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS AL20221201_MKP_PDAC_01 4 394.1929931640625 3 394.192912 1179.55691 NaN NaN NaN NaN NaN NaN NaN 45.625 1 40.67 40.17 41.17 -4.9549 0 0 0 0.39118 1 28045 28045 20.415 10.264 1 25552 9669;8416;13422 17278 17612 30183 30183 -0.02568966409580753 IYPNASLLI 9 Unmodified _IYPNASLLI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-7|CEACAM1;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.29541015625 2 502.294768 1002.57498 0.91794 0.00046108 0.59895 0.00030085 1.5169 0.00076193 502.29499605510694 90.23 0.85937 84.055 83.615 84.474 -6.1757 159 49 4 0 0 0 0.031062 2 59648 59522;59648 54.774 2.5052 1 64810000 25553 2314;1437;1275 17279 17613 30184;30185 30185 0.07379815108436105 IYPNHSSPCL 10 Unmodified _IYPNHSSPCL_ 0 0 0 nc|ENSG00000152254|Q9NQR9-3|G6PC2;ENSG00000152254|ENST00000375363|G6PC2 nc|ENSG00000152254|Q9NQR9-3|G6PC2 nc|ENSG00000152254|Q9NQR9-3|G6PC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.2899169921875 2 565.768591 1129.52263 0.66901 0.0003785 -2.9211 -0.0016526 -2.252 -0.0012741 565.7682173652498 100.65 0.1525 94.472 94.389 94.541 -6.1757 24 10 3 0 0 0 0.22667 1 67309 67309 6.7232 5.0705 1 109090000 25554 6175 17280 17614 30186 30186 -0.03695091296845021 IYPPINVLPSL 11 Unmodified _IYPPINVLPSL_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.364013671875 2 613.363182 1224.71181 4.4734 0.0027438 -0.92366 -0.00056654 3.5497 0.0021773 613.3626288314008 98.885 0.38927 98.857 98.718 99.108 -0.028282 40 13 4 0 0 0 0.017265 1 54935 54935 60.074 32.445 1 14687000 25555 5847 17281 17615 30187 30187 0.10844304268152882 IYPPINVLPSL 11 Unmodified _IYPPINVLPSL_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3632202148438 2 613.363182 1224.71181 0.48427 0.00029703 -0.35063 -0.00021507 0.13364 8.1968E-05 613.3631164149414 100.6 0.23648 94.422 94.291 94.528 -6.1757 47 15 4 0 0 0 0.00047726 1 67250 67250 88.954 52.827 1 239140000 25556 5847 17281 17615 30188 30188 0.10844304268152882 IYPPKLHQF 9 Unmodified _IYPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5498046875 3 381.550082 1141.62842 -0.055295 -2.1098E-05 0.20168 7.6951E-05 0.14638 5.5853E-05 381.5500669538807 41.435 0.71844 41.132 40.678 41.396 -0.30304 81 33 3 0 0 0 0.085319 3 22024 21795;21898;22024 36.506 25.011 1 10468000 25557 2282 17282 17616 30189;30190;30191 30191 0.0632661261092835 IYPPKLHQF 9 Unmodified _IYPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5503234863281 3 381.550082 1141.62842 0.11758 4.4861E-05 0.27141 0.00010356 0.38898 0.00014842 381.5501122800253 41.119 1.1559 41.117 40.417 41.573 -0.0017929 188 55 5 0 0 0 0.047788 6 21832 21626;21728;21832;21941;22049;22161 45.7 32.278 1 237850000 25558 2282 17282 17616 30192;30193;30194;30195;30196;30197 30194 0.0632661261092835 IYPPKLHQF 9 Unmodified _IYPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8223266601562 2 571.821484 1141.62842 0.12923 7.3895E-05 0.62696 0.00035851 0.75619 0.00043241 571.8217456842434 41.102 0.90279 41.1 40.564 41.467 -0.0017891 118 43 4 0 0 0 0.012668 4 22063 21735;21844;21954;22063 81.613 58.465 1 25349000 25559 2282 17282 17616 30198;30199;30200;30201 30201 0.0632661261092835 IYPPKLHQF 9 Unmodified _IYPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5505676269531 3 381.550082 1141.62842 1.1158 0.00042575 0.63905 0.00024383 1.7549 0.00066958 381.5499407737684 45.651 1.4112 40.696 40.059 41.471 -4.9549 340 95 7 0 0 0 0.023481 7 27849 27711;27849;27991;28133;28276;28417;28557 60.074 38.537 1 1379600000 25560 2282 17282 17616 30202;30203;30204;30205;30206;30207;30208 30203 0.0632661261092835 IYPPKLHQF 9 Unmodified _IYPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8208618164062 2 571.821484 1141.62842 0.75826 0.00043359 0.58199 0.0003328 1.3403 0.00076639 571.8216075010116 45.634 0.91211 40.679 40.207 41.119 -4.9549 185 61 4 0 0 0 0.023481 5 27713 27713;27852;28003;28146;28290 57.471 39.336 1 254120000 25561 2282 17282 17616 30209;30210;30211;30212;30213 30209 0.0632661261092835 IYPPLLGALSF 11 Unmodified _IYPPLLGALSF_ 0 0 0 ENST00000380338.8_1_9:20622330-20622507:-|nuORF ENST00000380338.8_1_9:20622330-20622507:-|nuORF ENST00000380338.8_1_9:20622330-20622507:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8445434570312 2 595.844625 1189.6747 0.27789 0.00016558 -0.8875 -0.00052881 -0.60961 -0.00036323 595.8443504955591 101.88 0.13584 95.709 95.644 95.78 -6.1757 18 6 4 0 0 0 0.0001225 1 68390 68390 92.822 56.695 1 99990000 25562 12595 17283 17617 30214 30214 0.08744632722391543 IYPPPGAK 8 Unmodified _IYPPPGAK_ 0 0 0 REV__ENSG00000112144|ENST00000676107|CILK1 REV__ENSG00000112144|ENST00000676107|CILK1 MSMS AL20221201_MKP_PDAC_01 4 421.7426147460938 2 421.742171 841.469789 NaN NaN NaN NaN NaN NaN NaN 43.976 1 39.211 38.711 39.711 -4.7648 0 0 0 0.95607 1 26780 26780 9.3474 0 1 + 25563 18788 17284 17618 30215 30215 0.04271318702660665 IYPQHLKSL 9 Unmodified _IYPQHLKSL_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2158508300781 3 366.88172 1097.62333 -0.18966 -6.9582E-05 0.17056 6.2574E-05 -0.019101 -7.0078E-06 366.8820935988481 32.49 0.17165 32.361 32.287 32.459 -0.12915 12 7 2 0 0 0 0.38785 1 16953 16953 8.9762 4.4474 1 1749900 25564 2577 17285 17619 30216 30216 0.07842308748331561 IYPQHLKSL 9 Unmodified _IYPQHLKSL_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8821716308594 3 366.88172 1097.62333 -0.2063 -7.5689E-05 -0.82864 -0.00030401 -1.0349 -0.0003797 366.8815376930499 32.324 0.16179 32.354 32.279 32.44 0.029743 10 6 2 0 0 0 0.32235 1 16967 16967 11.518 7.1117 1 1100900 25565 2577 17285 17619 30217 30217 0.07842308748331561 IYPQHLKSL 9 Unmodified _IYPQHLKSL_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MSMS AL20221201_MKP_PDAC_01 4 366.8826904296875 3 366.88172 1097.62333 NaN NaN NaN NaN NaN NaN NaN 36.385 1 32.193 31.693 32.693 -4.1928 0 0 0 0.25233 1 21241 21241 20.581 9.7814 1 25566 2577 17285 17619 30218 30218 0.07842308748331561 IYPQHLKSLAF 11 Unmodified _IYPQHLKSLAF_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9183959960938 3 439.583562 1315.72886 0.71348 0.00031363 -0.10551 -4.6382E-05 0.60797 0.00026725 439.91773961668764 50.884 0.21311 50.83 50.708 50.921 -0.053875 23 10 3 0 0 0 0.66175 1 27502 27502 7.846 4.0001 1 3498000 25567 2577 17286 17620 30219 30219 0.0836222487394025 IYPQVHNR 8 Unmodified _IYPQVHNR_ 0 0 0 REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF REV__ENST00000465154.1_1_9:130272232-130272589:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2841186523438 2 513.777608 1025.54066 0.22956 0.00011794 0.96892 0.00049781 1.1985 0.00061575 513.7777466538507 85.048 0.87282 85.048 84.514 85.387 0 114 43 4 0 0 0 0.6895 1 47035 47035 18.135 18.135 1 17572000 + 25568 20186 17287 17621 30220 30220 0.02891411740165495 IYPQVLHSL 9 Unmodified _IYPQVLHSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3059692382812 2 535.305667 1068.59678 0.17438 9.3348E-05 -0.15276 -8.1776E-05 0.021619 1.1573E-05 535.3055642293482 59.853 0.58228 59.362 59.089 59.671 -0.49079 109 28 5 0 0 0 0.0090948 3 32519 32519;32633;32740 85.272 54.635 1 174340000 25569 8367 17288 17622 30221;30222;30223 30221 0.06522619856991696 IYPQVLHSL 9 Unmodified _IYPQVLHSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3055419921875 2 535.305667 1068.59678 0.2933 0.000157 0.34201 0.00018308 0.6353 0.00034008 535.3058409255458 59.587 0.74442 59.534 59.174 59.918 -0.053062 122 37 5 0 0 0 0.0090948 3 32525 32321;32423;32525 85.272 58.388 1 223340000 25570 8367 17288 17622 30224;30225;30226 30226 0.06522619856991696 IYPQVLHSL 9 Unmodified _IYPQVLHSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3070678710938 2 535.305667 1068.59678 0.56082 0.00030021 0.75765 0.00040557 1.3185 0.00070578 535.30603526954 65.135 1.1823 58.959 58.509 59.692 -6.1757 206 67 5 0 0 0 0.0095811 5 42142 42142;42276;42401;42531;42666 81.613 54.729 1 906450000 25571 8367 17288 17622 30227;30228;30229;30230;30231 30227 0.06522619856991696 IYPQVLHSL 9 Unmodified _IYPQVLHSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3065185546875 2 535.305667 1068.59678 0.70367 0.00037668 0.38593 0.00020659 1.0896 0.00058327 535.3058105534252 66.103 0.71744 59.927 59.674 60.392 -6.1757 113 40 4 0 0 0 0.0095811 3 42935 42801;42935;43235 81.613 54.729 1 143970000 25572 8367 17288 17622 30232;30233;30234 30233 0.06522619856991696 IYPQVLHSL 9 Unmodified _IYPQVLHSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.306884765625 2 535.305667 1068.59678 0.66423 0.00035557 -0.062298 -3.3348E-05 0.60194 0.00032222 535.3055990890664 67.084 0.80556 60.908 60.58 61.385 -6.1757 120 45 4 0 0 0 0.0086722 2 43523 43523;43649 88.954 54.635 1 85698000 25573 8367 17288 17622 30235;30236 30235 0.06522619856991696 IYPRLYCLF 9 Carbamidomethyl (C) _IYPRLYC(Carbamidomethyl (C))LF_ IYPRLYC(1)LF IYPRLYC(61)LF 0 1 0 nc|ENSG00000136827|O14656-2|TOR1A;ENST00000473084.1_1_9:132584712-132586364:-|nuORF;ENSG00000136827|ENST00000351698|TOR1A nc|ENSG00000136827|O14656-2|TOR1A nc|ENSG00000136827|O14656-2|TOR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.827880859375 2 622.828452 1243.64235 1.3562 0.00084468 -1.0276 -0.00064002 0.32859 0.00020466 622.8276638249375 98.264 0.1908 92.088 91.985 92.176 -6.1757 31 12 3 0 0 0 0.022193 1 65118 65118 61.357 35.089 1 101540000 25574 4863 17289 17623 30237 30237 501 0.030275220477051334 IYPRTQLPTW 10 Unmodified _IYPRTQLPTW_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8474731445312 2 637.84823 1273.68191 NaN NaN NaN NaN NaN NaN NaN 60.124 1 60.071 59.571 60.571 -0.053062 0 0 0 0.41558 1 32787 32787 41.956 21.502 1 25575 1031 17290 17624 30238 30238 0.05601365322809215 IYPRTQLPTW 10 Unmodified _IYPRTQLPTW_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MSMS AL20221201_MKP_PDAC_01 4 637.8482055664062 2 637.84823 1273.68191 NaN NaN NaN NaN NaN NaN NaN 67.583 1 61.407 60.907 61.907 -6.1757 0 0 0 0.19521 1 44036 44036 57.249 20.743 1 25576 1031 17290 17624 30239 30239 0.05601365322809215 IYPSIFHVL 9 Unmodified _IYPSIFHVL_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8109741210938 2 544.810585 1087.60662 -0.12531 -6.8272E-05 0.98636 0.00053738 0.86105 0.00046911 544.8112862677327 83.965 0.31272 84.028 83.857 84.17 0.063171 18 12 2 0 0 0 0.045537 1 46428 46428 46.921 16.696 1 17827000 25577 8653 17291 17625 30240 30240 0.06631807862390815 IYPSIFHVL 9 Unmodified _IYPSIFHVL_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8103637695312 2 544.810585 1087.60662 0.80238 0.00043715 0.92947 0.00050639 1.7319 0.00094353 544.8106576218112 98.532 0.14697 92.356 92.267 92.414 -6.1757 28 10 4 0 0 0 0.068777 1 65337 65337 40.449 17.3 1 142400000 25578 8653 17291 17625 30241 30241 0.06631807862390815 IYPSKWIARL 10 Unmodified _IYPSKWIARL_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.248291015625 3 416.248403 1245.72338 0.61667 0.00025669 -0.43345 -0.00018042 0.18322 7.6264E-05 416.24814720912354 57.185 0.32216 57.119 56.917 57.239 -0.066036 29 15 3 0 0 0 0.12584 1 31096 31096 42.835 31.936 1 6269700 25579 16096;16097 17292 17626 30242 30242 0.11034546082123597 IYPSKWIARL 10 Unmodified _IYPSKWIARL_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.2485656738281 3 416.248403 1245.72338 1.4261 0.0005936 -1.7661 -0.00073513 -0.34003 -0.00014154 416.24737506934196 88.344 0.69682 82.168 81.956 82.653 -6.1757 83 38 3 0 0 0 0.16688 2 58241 58241;58524 37.771 22.814 1 26500000 25580 16096;16097 17292 17626 30243;30244 30243 0.11034546082123597 IYPSKWIARL 10 Unmodified _IYPSKWIARL_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 623.8189086914062 2 623.868966 1245.72338 0.99338 0.00061974 -0.007145 -4.4575E-06 0.98624 0.00061528 624.3704934328119 88.354 0.32043 82.178 82.029 82.349 -6.1757 26 17 2 0 0 0 0.16345 1 58251 58251 40.239 17.503 1 11205000 25581 16096;16097 17292 17626 30245 30245 0.11034546082123597 IYPSNMQTM 9 2 Oxidation (M) _IYPSNM(Oxidation (M))QTM(Oxidation (M))_ IYPSNM(1)QTM(1) IYPSNM(55)QTM(55) 0 0 2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MSMS AL20221201_MKP_PDAC_01 4 558.739013671875 2 558.738642 1115.46273 NaN NaN NaN NaN NaN NaN NaN 25.203 1 22.32 21.82 22.82 -2.8831 0 0 0 0.056448 1 13780 13780 54.774 34.32 1 25582 2554 17293 17627 30246 30246 439;440 -0.09038150022388436 IYPSNMQTMLL 11 2 Oxidation (M) _IYPSNM(Oxidation (M))QTM(Oxidation (M))LL_ IYPSNM(1)QTM(1)LL IYPSNM(83)QTM(83)LL 0 0 2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.8223266601562 2 671.822706 1341.63086 1.0947 0.00073543 -0.22972 -0.00015433 0.86495 0.00058109 671.8227452343439 63.944 0.70582 57.769 57.427 58.132 -6.1757 99 37 3 0 0 0 0.00098399 4 41321 41196;41321;41454;41596 83.429 59.793 1 44834000 25583 2554 17294 17628 30247;30248;30249;30250 30248 439;440 -0.0262908782856357 IYPSNMQTMLL 11 Oxidation (M) _IYPSNM(Oxidation (M))QTMLL_ IYPSNM(0.999)QTM(0.001)LL IYPSNM(30)QTM(-30)LL 0 0 1 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.826171875 2 663.825249 1325.63594 0.60999 0.00040493 0.005567 3.6955E-06 0.61556 0.00040862 663.8258248111567 74.159 0.58038 67.984 67.747 68.328 -6.1757 59 29 3 0 0 0 0.088819 1 48526 48526 43.772 14.691 2 22162000 25584 2554 17294 17629 30251 30251 439;440 -0.01384783965954739 IYPSNMQTMLL 11 Oxidation (M) _IYPSNMQTM(Oxidation (M))LL_ IYPSNMQTM(1)LL IYPSNM(-51)QTM(51)LL 0 0 1 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.826416015625 2 663.825249 1325.63594 0.63869 0.00042398 -0.25578 -0.00016979 0.38291 0.00025419 663.8254692241793 74.857 0.65305 68.681 68.328 68.981 -6.1757 91 34 3 0 0 0 0.00063278 3 48891 48772;48891;49019 87.258 31.081 2 45188000 25585 2554 17294 17629 30252;30253;30254 30253 439;440 -0.01384783965954739 IYPSNMQTMLL 11 Unmodified _IYPSNMQTMLL_ 0 0 0 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8295288085938 2 655.827792 1309.64103 1.0219 0.0006702 -0.63803 -0.00041844 0.38388 0.00025176 655.8274495068673 89.437 0.80526 83.261 82.865 83.67 -6.1757 86 44 2 0 0 0 0.0030527 4 58864 58864;58996;59119;59243 86.332 36.399 1 66602000 25586 2554 17294 17630 30255;30256;30257;30258 30255 -0.00140480103345908 IYPSPTGVLI 10 Unmodified _IYPSPTGVLI_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.3079833984375 2 530.307875 1058.6012 0.30687 0.00016274 -0.87603 -0.00046457 -0.56916 -0.00030183 530.3074909754856 85.577 0.38567 79.401 79.196 79.581 -6.1757 36 22 2 0 0 0 0.1028 1 56452 56452 46.021 6.0713 1 18965000 25587 8403 17295 17631 30259 30259 0.07424084279909948 IYPTAPPRF 9 Unmodified _IYPTAPPRF_ 0 0 0 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2930297851562 2 531.292559 1060.57057 0.33268 0.00017675 0.36983 0.00019649 0.70251 0.00037324 531.2924460194861 48.993 0.74155 48.949 48.694 49.436 -0.04369 104 36 4 0 0 0 0.019303 3 26487 26374;26487;26583 64.236 35.749 1 12158000 25588 16242 17296 17632 30260;30261;30262 30261 0.042703506855104933 IYPTAPPRF 9 Unmodified _IYPTAPPRF_ 0 0 0 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 nc|ENSG00000143353|Q5VWZ2-2|LYPLAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2936401367188 2 531.292559 1060.57057 0.86761 0.00046095 0.53856 0.00028613 1.4062 0.00074709 531.2924733980864 54.758 0.5812 48.893 48.682 49.263 -5.8653 76 35 3 0 0 0 0.07916 1 34956 34956 37.974 14.826 1 33789000 25589 16242 17296 17632 30263 30263 0.042703506855104933 IYPVDLGDKF 10 Unmodified _IYPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8093872070312 2 583.808239 1165.60193 NaN NaN NaN NaN NaN NaN NaN 63.756 1 63.756 63.256 64.256 0 0 0 0 0.83454 1 35560 35560 10.8 0.72558 1 25590 16329 17297 17633 30264 30264 0.02574878928930957 IYPVDLGDKF 10 Unmodified _IYPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.808837890625 2 583.808239 1165.60193 0.54978 0.00032097 0.50823 0.00029671 1.058 0.00061767 583.8086701213306 64.15 0.394 63.665 63.473 63.867 -0.48512 35 18 2 0 0 0 0.22237 1 35047 35047 32.037 13.903 1 23770000 25591 16329 17297 17633 30265 30265 0.02574878928930957 IYPVDLGDKF 10 Unmodified _IYPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2708740234375 2 583.808239 1165.60193 1.2349 0.00072094 1.0818 0.00063155 2.3167 0.0013525 583.8086574298279 63.716 0.23208 63.705 63.571 63.803 -0.010529 17 10 2 0 0 0 0.22602 1 34829 34829 18.373 3.5348 1 3169100 25592 16329 17297 17633 30266 30266 0.02574878928930957 IYPVDLGDKF 10 Unmodified _IYPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.80859375 2 583.808239 1165.60193 0.75687 0.00044187 -1.001 -0.00058439 -0.24412 -0.00014252 583.8079249861556 69.934 1.0112 63.758 63.467 64.478 -6.1757 86 56 3 0 0 0 0.014503 4 45702 45587;45702;45830;45966 80.676 44.549 1 39850000 25593 16329 17297 17633 30267;30268;30269;30270 30268 0.02574878928930957 IYPVKYTQTF 10 Unmodified _IYPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3370971679688 2 630.337164 1258.65977 0.19951 0.00012576 -0.2456 -0.00015481 -0.04609 -2.9052E-05 630.3368138773207 50.905 0.26128 50.491 50.358 50.619 -0.41351 25 12 3 0 0 0 0.10424 1 27431 27431 45.7 33.168 1 2351000 25594 2889 17298 17634 30271 30271 0.04079140854355501 IYPVKYTQTF 10 Unmodified _IYPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8397216796875 2 630.337164 1258.65977 1.03 0.00064928 -0.23052 -0.00014531 0.79953 0.00050397 630.3369816021539 50.574 0.363 50.52 50.285 50.648 -0.053871 49 17 4 0 0 0 0.085354 1 27297 27297 49.933 17.147 1 13612000 25595 2889 17298 17634 30272 30272 0.04079140854355501 IYPVLQALDF 10 Unmodified _IYPVLQALDF_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8267822265625 2 589.826432 1177.63831 1.3982 0.00082468 -0.96717 -0.00057046 0.431 0.00025421 589.8253114649604 100.41 0.1631 100.38 100.29 100.46 -0.036301 12 5 3 0 0 0 0.13184 1 55793 55793 42.095 26.247 1 3365100 25596 5661 17299 17635 30273 30273 0.05659755825627144 IYPVLQALDF 10 Unmodified _IYPVLQALDF_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8267822265625 2 589.826432 1177.63831 1.0027 0.00059143 -4.3981 -0.0025941 -3.3954 -0.0020027 589.8259272922292 101.22 0.15022 95.047 94.956 95.107 -6.1757 16 9 2 0 0 0 0.037795 1 67851 67851 64.236 38.837 1 53911000 25597 5661 17299 17635 30274 30274 0.05659755825627144 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2792358398438 2 512.279118 1022.54368 0.8116 0.00041577 -0.51375 -0.00026318 0.29785 0.00015258 512.2788551464314 79.561 0.50024 79.071 78.796 79.296 -0.48933 37 21 2 0 0 0 0.12841 1 43626 43626 30.225 1.738 1 4545600 25598 6327 17300 17636 30275 30275 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2791748046875 2 512.279118 1022.54368 0.64767 0.00033179 -0.36629 -0.00018764 0.28139 0.00014415 512.2789394029919 78.996 0.50436 79.051 78.78 79.284 0.054977 67 19 5 0 0 0 0.045537 1 43558 43558 46.921 8.7697 1 19301000 25599 6327 17300 17636 30276 30276 0.03331242074318652 IYPVNAISF 9 Unmodified _IYPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.279541015625 2 512.279118 1022.54368 1.0064 0.00051557 0.13267 6.7965E-05 1.1391 0.00058353 512.278923518657 86.899 0.6974 80.723 80.414 81.112 -6.1757 97 37 4 0 0 0 0.03327 3 57291 57175;57291;57409 53.576 13.618 1 90838000 25600 6327 17300 17636 30277;30278;30279 30278 0.03331242074318652 IYPWTLCFL 9 Unmodified _IYPWTLCFL_ 0 0 0 REV__ENSG00000175548|ENST00000308742|ALG10B REV__ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7844848632812 2 578.298996 1154.58344 0.89743 0.00051899 1.694 0.00097962 2.5914 0.0014986 578.3007167673313 49.919 0.6986 44.379 44.125 44.824 -5.5391 116 44 4 0 0 0 0.28047 1 31472 31472 18.135 0.69234 1 179400000 + 25601 22880 17301 17637 30280 30280 0.012330457534062589 IYPWVHVVI 9 Unmodified _IYPWVHVVI_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3 ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3281860351562 2 563.326402 1124.63825 0.88948 0.00050107 0.2702 0.00015221 1.1597 0.00065328 563.3264631143736 83.181 0.64953 83.244 82.816 83.465 0.063171 63 24 4 0 0 0 0.047696 2 45966 45966;46075 45.75 24.003 1 66466000 25602 7063 17302 17638 30281;30282 30281 0.0809180061630741 IYPYLLPFI 9 Unmodified _IYPYLLPFI_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1;nc|ENSG00000198862|O94822-2|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8320922851562 2 569.830986 1137.64742 1.1797 0.00067226 -0.48055 -0.00027383 0.6992 0.00039843 569.8314924815968 102.41 0.12516 96.23 96.181 96.306 -6.1757 26 14 3 0 0 0 0.028712 1 68723 68723 56.048 19.582 1 27365000 25603 10177 17303 17639 30283 30283 0.08410149181986526 IYPYQPPEF 9 Unmodified _IYPYQPPEF_ 0 0 0 REV__ENSG00000167005|ENST00000300291|NUDT21 REV__ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.282470703125 2 577.281857 1152.54916 0.78845 0.00045516 -1.4273 -0.00082398 -0.63889 -0.00036882 577.2813538576272 81.818 0.359 81.323 81.139 81.498 -0.4952 26 13 2 0 0 0 0.51218 2 44754 44754;44880 6.7232 1.4925 1 747550 + 25604 22173 17304 17640 30284;30285 30284 -0.021010791338767376 IYPYQPPEF 9 Unmodified _IYPYQPPEF_ 0 0 0 REV__ENSG00000167005|ENST00000300291|NUDT21 REV__ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.281494140625 2 577.281857 1152.54916 1.4021 0.00080941 -1.2187 -0.00070354 0.18339 0.00010587 577.2811278013594 81.238 0.56773 81.298 80.966 81.533 0.059929 54 21 3 0 0 0 0.1773 2 44931 44823;44931 25.399 7.2643 1 8512200 + 25605 22173 17304 17640 30286;30287 30287 -0.021010791338767376 IYPYQPPEF 9 Unmodified _IYPYQPPEF_ 0 0 0 REV__ENSG00000167005|ENST00000300291|NUDT21 REV__ENSG00000167005|ENST00000300291|NUDT21 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.281857 1152.54916 0.78845 0.00045516 -1.4273 -0.00082398 -0.63889 -0.00036882 577.2813538576272 81.818 0.359 81.323 81.139 81.498 -0.4952 0.012632 -0.00020429 NaN 25.399 26 13 2 NaN NaN NaN NaN 0 NaN NaN 0 747550 + 25606 22173 17304 17640 -0.021010791338767376 IYPYVIQEL 9 Unmodified _IYPYVIQEL_ 0 0 0 ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3137817382812 2 569.313158 1136.61176 0.67806 0.00038603 0.54235 0.00030877 1.2204 0.0006948 569.31342229598 83.754 0.52351 83.254 83.005 83.528 -0.49953 57 21 4 0 0 0 0.14 2 45868 45773;45868 40.449 12.142 1 5312100 25607 8770 17305 17641 30288;30289 30289 0.04892066934326067 IYPYVIQEL 9 Unmodified _IYPYVIQEL_ 0 0 0 ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3170776367188 2 569.313158 1136.61176 1.1027 0.0006278 0.93291 0.00053112 2.0356 0.0011589 569.3136932966802 91.479 0.72829 85.303 84.994 85.723 -6.1757 78 40 3 0 0 0 0.024189 4 60329 60329;60449;60574;60733 65.235 25.278 1 21460000 25608 8770 17305 17641 30290;30291;30292;30293 30290 0.04892066934326067 IYPYVIQEL 9 Unmodified _IYPYVIQEL_ 0 0 0 ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 569.313158 1136.61176 0.33655 0.0001916 -0.12089 -6.8827E-05 0.21565 0.00012278 569.3131160318644 83.239 0.25436 83.239 83.129 83.383 0 -0.0074955 -0.00059399 NaN 40.449 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 700240 25609 8770 17305 17641 0.04892066934326067 IYQDAFKII 9 Unmodified _IYQDAFKII_ 0 0 0 REV__ENSG00000174898|ENST00000381624|CATSPERD REV__ENSG00000174898|ENST00000381624|CATSPERD MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.814697265625 2 555.813325 1109.6121 0.99756 0.00055446 1.3064 0.00072614 2.304 0.0012806 555.8136294686569 70.414 0.47699 64.238 63.897 64.374 -6.1757 35 26 2 0 0 0 0.013609 1 46010 46010 70.332 1.2271 1 16813000 + 25610 22825 17306 17642 30294 30294 0.061674866541807205 IYQDLNRL 8 Unmodified _IYQDLNRL_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7864990234375 2 517.785099 1033.55564 0.64383 0.00033336 -0.26281 -0.00013608 0.38101 0.00019728 517.7852632533038 38.9 0.42157 34.449 34.237 34.659 -4.4509 47 26 2 0 0 0 0.23628 1 22955 22955 64.236 6.765 1 31853000 25611 1641 17307 17643 30295 30295 0.04020858817534645 IYQDLNRL 8 Unmodified _IYQDLNRL_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.785099 1033.55564 -0.4012 -0.00020773 -0.6448 -0.00033387 -1.046 -0.0005416 517.7862358968016 34.316 0.098557 34.316 34.247 34.345 0 -0.036702 -0.0003424 NaN 64.236 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1116300 25612 1641 17307 17643 0.04020858817534645 IYQDRDQFAKL 11 Unmodified _IYQDRDQFAKL_ 0 0 0 ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2 ENST00000577789.5_1_17:27207581-27224656:-|nuORF ENST00000577789.5_1_17:27207581-27224656:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2444458007812 3 466.245498 1395.71466 -0.077063 -3.593E-05 -0.20547 -9.58E-05 -0.28253 -0.00013173 466.2452046783676 38.693 0.25837 38.406 38.283 38.541 -0.28687 28 12 3 0 0 0 0.38865 1 20370 20370 22.109 6.8604 1 11438000 25613 4424 17308 17644 30296 30296 0.03263527655008147 IYQDRDQFAKL 11 Unmodified _IYQDRDQFAKL_ 0 0 0 ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2 ENST00000577789.5_1_17:27207581-27224656:-|nuORF ENST00000577789.5_1_17:27207581-27224656:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2472229003906 3 466.245498 1395.71466 0.69638 0.00032468 0.5904 0.00027527 1.2868 0.00059996 466.24600154501394 43.031 0.39268 38.266 38.026 38.419 -4.7648 60 25 4 0 0 0 0.60536 1 26140 26140 11.065 0.16632 1 38091000 25614 4424 17308 17644 30297 30297 0.03263527655008147 IYQDSFEQRF 10 Unmodified _IYQDSFEQRF_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.8159790039062 2 666.814584 1331.61462 0.43875 0.00029256 0.39703 0.00026475 0.83578 0.00055731 666.8149291072216 47.848 0.25187 47.848 47.707 47.959 0 29 11 3 0 0 0 0.01074 1 26190 26190 86.332 58.703 1 4983400 25615 6576 17309 17645 30298 30298 -0.03792709678828032 IYQDSFEQRF 10 Unmodified _IYQDSFEQRF_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.81494140625 2 666.814584 1331.61462 0.52004 0.00034677 -0.3098 -0.00020658 0.21024 0.00014019 666.8144335977082 48.177 0.272 47.824 47.652 47.924 -0.3526 38 13 4 0 0 0 0.0069983 1 25805 25805 93.166 60.38 1 14955000 25616 6576 17309 17645 30299 30299 -0.03792709678828032 IYQDSFEQRF 10 Unmodified _IYQDSFEQRF_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.81494140625 2 666.814584 1331.61462 0.91396 0.00060944 -0.30006 -0.00020008 0.6139 0.00040936 666.8143960635022 53.703 0.41536 47.899 47.729 48.144 -5.8042 66 26 3 0 0 0 2.5882E-08 2 33915 33915;34052 149.91 99.981 1 58781000 25617 6576 17309 17645 30300;30301 30300 -0.03792709678828032 IYQDVTLKW 9 Unmodified _IYQDVTLKW_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3154296875 2 583.316232 1164.61791 0.25622 0.00014946 -0.51031 -0.00029767 -0.25409 -0.00014821 583.3157715617072 61.833 0.18395 61.346 61.243 61.426 -0.48764 16 8 3 0 0 0 0.13639 1 33684 33684 38.176 20.029 1 1308400 25618 3642 17310 17646 30302 30302 0.042185851658587126 IYQDVTLKW 9 Unmodified _IYQDVTLKW_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3184814453125 2 583.316232 1164.61791 0.7071 0.00041246 0.78278 0.00045661 1.4899 0.00086907 583.3177357963824 61.414 0.26447 61.381 61.25 61.514 -0.032787 30 12 4 0 0 0 0.022653 1 33520 33520 74.2 28.5 1 6720600 25619 3642 17310 17646 30303 30303 0.042185851658587126 IYQEIILANHF 11 Unmodified _IYQEIILANHF_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.8662719726562 2 680.86662 1359.71869 NaN NaN NaN NaN NaN NaN NaN 70.683 1 70.206 69.706 70.706 -0.47735 0 0 0 0.43177 1 38673 38673 40.239 32.63 1 25620 4681 17311 17647 30304 30304 0.05321617148706537 IYQEVWNLF 9 Unmodified _IYQEVWNLF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3117065429688 2 606.308406 1210.60226 4.2584 0.0025819 0.71665 0.00043451 4.975 0.0030164 606.3087054097573 98.952 0.19845 98.924 98.804 99.003 -0.028282 17 6 4 0 0 0 0.039985 1 54971 54971 49.933 29.479 1 5512500 25621 10689 17312 17648 30305 30305 0.005382986487802555 IYQEVWNLF 9 Unmodified _IYQEVWNLF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3088989257812 2 606.308406 1210.60226 1.0319 0.00062563 1.5025 0.00091095 2.5343 0.0015366 606.3093556739765 100.78 0.17299 94.607 94.515 94.688 -6.1757 24 11 3 0 0 0 0.094149 1 67489 67489 34.402 18.555 1 83125000 25622 10689 17312 17648 30306 30306 0.005382986487802555 IYQFHYKNW 9 Unmodified _IYQFHYKNW_ 0 0 0 nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-3|PTPN22;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22 nc|ENSG00000134242|Q9Y2R2-2|PTPN22 nc|ENSG00000134242|Q9Y2R2-2|PTPN22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5488586425781 3 433.548741 1297.62439 -0.0094529 -4.0983E-06 3.6988 0.0016036 3.6893 0.0015995 433.54884221379365 37.237 0.64753 37.258 36.836 37.484 0.021545 52 29 3 0 0 0 0.34134 1 19747 19747 15.248 3.7538 1 2422400 25623 4573 17313 17649 30307 30307 -0.012514768827713851 IYQFIMDRF 9 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ IYQFIM(1)DRF IYQFIM(48)DRF 0 0 1 ENSG00000054598|ENST00000645831|FOXC1;FOXC2|p.G97D|1|0.06|ENSG00000176692|chr16:86567625-86567625|G/A|missense_variant;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.8087768554688 2 624.807716 1247.60088 0.34384 0.00021484 0.42106 0.00026308 0.76491 0.00047792 624.8081119881754 64.847 0.32347 64.362 64.208 64.532 -0.48512 47 14 4 0 0 0 0.044296 2 35440 35343;35440 47.594 24.446 1 8617100 25624 761;8614 17314 17650 30308;30309 30309 118 -0.01301658711622622 IYQFIMDRF 9 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ IYQFIM(1)DRF IYQFIM(56)DRF 0 0 1 ENSG00000054598|ENST00000645831|FOXC1;FOXC2|p.G97D|1|0.06|ENSG00000176692|chr16:86567625-86567625|G/A|missense_variant;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8075561523438 2 624.807716 1247.60088 1.0263 0.00064126 -1.0513 -0.00065687 -0.024984 -1.561E-05 624.8071934598634 64.337 0.70926 64.326 64.117 64.826 -0.010529 142 35 6 0 0 0 0.029718 2 35236 35236;35352 55.503 33.756 1 533230000 25625 761;8614 17314 17650 30310;30311 30310 118 -0.01301658711622622 IYQFIMDRF 9 Oxidation (M) _IYQFIM(Oxidation (M))DRF_ IYQFIM(1)DRF IYQFIM(89)DRF 0 0 1 ENSG00000054598|ENST00000645831|FOXC1;FOXC2|p.G97D|1|0.06|ENSG00000176692|chr16:86567625-86567625|G/A|missense_variant;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8081665039062 2 624.807716 1247.60088 0.65108 0.0004068 -0.63778 -0.00039849 0.013298 8.3087E-06 624.8076716856566 73.633 2.2351 67.458 65.919 68.154 -6.1757 252 112 4 0 0 0 0.0086209 6 47885 47885;48004;48115;48227;48346;48473 89.401 66.252 1 87852000 25626 761;8614 17314 17650 30312;30313;30314;30315;30316;30317 30312 118 -0.01301658711622622 IYQFIMDRF 9 Unmodified _IYQFIMDRF_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1;FOXC2|p.G97D|1|0.06|ENSG00000176692|chr16:86567625-86567625|G/A|missense_variant;ENSG00000176678|ENST00000320241|FOXL1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1;ENSG00000176692|ENST00000649859|FOXC2 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.8102416992188 2 616.810259 1231.60597 0.96169 0.00059318 -0.94282 -0.00058154 0.018876 1.1643E-05 616.8097851907836 92.06 0.80978 85.884 85.49 86.299 -6.1757 180 47 5 0 0 0 0.0084276 3 60993 60741;60872;60993 99.755 78.009 1 630550000 25627 761;8614 17314 17651 30318;30319;30320 30320 -0.0005735484899105359 IYQGGIFEL 9 Unmodified _IYQGGIFEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.27685546875 2 520.276575 1038.5386 0.14808 7.7042E-05 -0.047345 -2.4632E-05 0.10073 5.241E-05 520.2764895290326 83.491 0.34789 83.555 83.33 83.678 0.063171 29 12 3 0 0 0 0.052168 1 46166 46166 44.407 6.2558 1 27511000 25628 3602 17315 17652 30321 30321 0.020869382117098212 IYQGGIFEL 9 Unmodified _IYQGGIFEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2771606445312 2 520.276575 1038.5386 0.93719 0.0004876 0.51747 0.00026923 1.4547 0.00075683 520.2768319309384 91.321 1.3163 85.145 84.406 85.723 -6.1757 166 54 4 0 0 0 0.042911 1 60409 60409 48.346 3.9388 1 283730000 25629 3602 17315 17652 30322 30322 0.020869382117098212 IYQGGIFEL 9 Unmodified _IYQGGIFEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1039.549438476562 1 1039.54587 1038.5386 0.63037 0.0006553 0.65199 0.00067777 1.2824 0.0013331 1039.5462922324912 91.336 0.72769 85.161 84.839 85.567 -6.1757 103 40 3 0 0 0 0.0082661 1 60642 60642 92.491 14.342 1 60463000 25630 3602 17315 17652 30323 30323 0.020869382117098212 IYQGSAKFI 9 Unmodified _IYQGSAKFI_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MSMS AL20221201_MKP_PDAC_01 4 513.78564453125 2 513.784567 1025.55458 NaN NaN NaN NaN NaN NaN NaN 48.139 1 42.906 42.406 43.406 -5.2339 0 0 0 0.049786 1 29956 29956 57.722 0.25064 1 25631 10212 17316 17653 30324 30324 0.04282644448608153 IYQHDDSGL 9 Unmodified _IYQHDDSGL_ 0 0 0 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2399291992188 2 524.240721 1046.46689 1.9158 0.0010043 -1.5243 -0.00079909 0.39154 0.00020526 524.7416730718862 94.308 0.5593 94.323 94.109 94.668 0.014244 28 20 2 0 0 0 0.48152 1 52403 52403 8.5933 2.2392 1 2171400 + 25632 21129 17317 17654 30325 30325 -0.054486012128108996 IYQHRFNFF 9 Unmodified _IYQHRFNFF_ 0 0 0 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5495300292969 3 424.548852 1270.62473 0.081475 3.459E-05 -0.14845 -6.3026E-05 -0.06698 -2.8436E-05 424.54871158211967 54.343 0.32113 54.276 54.101 54.422 -0.066936 44 15 4 0 0 0 0.087258 2 29466 29466;29578 32.786 23.542 1 22701000 25633 6032 17318 17655 30326;30327 30326 0.00023942837083268387 IYQHRFNFF 9 Unmodified _IYQHRFNFF_ 0 0 0 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5513000488281 3 424.548852 1270.62473 1.3373 0.00056774 0.9842 0.00041784 2.3215 0.00098558 424.5495294519413 87.014 0.61716 80.838 80.546 81.163 -6.1757 85 33 3 0 0 0 0.49272 1 57388 57388 8.1555 4.5685 1 18730000 25634 6032 17318 17655 30328 30328 0.00023942837083268387 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.812255859375 2 555.813325 1109.6121 0.34777 0.0001933 0.7952 0.00044198 1.143 0.00063528 555.8137117994052 65.522 0.39192 65.038 64.854 65.246 -0.48428 46 17 3 0 0 0 0.012668 2 35716 35716;35825 72.968 19.135 1 28893000 25635 3014;9881 17319 17656 30329;30330 30329 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8134765625 2 555.813325 1109.6121 0.78175 0.00043451 0.18683 0.00010385 0.96858 0.00053835 555.8134788756577 65.067 0.40661 65.067 64.854 65.261 7.6294E-06 68 19 5 0 0 0 0.0082475 2 35605 35605;35714 92.653 30.081 1 81175000 25636 3014;9881 17319 17656 30331;30332 30331 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8154907226562 2 555.813325 1109.6121 1.1091 0.00061647 1.4322 0.00079602 2.5413 0.0014125 555.8143975094374 78.955 0.50174 72.78 72.665 73.167 -6.1757 42 27 2 0 0 0 0.010818 1 51804 51804 78.149 3.7266 1 5008000 25637 3014;9881 17319 17656 30333 30333 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MSMS AL20221201_MKP_PDAC_01 4 555.8131103515625 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 75.471 1 69.295 68.795 69.795 -6.1757 0 0 0 0.030047 1 49361 49361 66.457 4.8548 1 25638 3014;9881 17319 17656 30334 30334 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MSMS AL20221201_MKP_PDAC_01 4 555.8133544921875 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 78.578 1 72.402 71.902 72.902 -6.1757 0 0 0 0.068038 1 51446 51446 51.63 3.8811 1 25639 3014;9881 17319 17656 30335 30335 0.061674866541807205 IYQKAFDLI 9 Unmodified _IYQKAFDLI_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MSMS AL20221201_MKP_PDAC_01 4 555.8141479492188 2 555.813325 1109.6121 NaN NaN NaN NaN NaN NaN NaN 78.763 1 72.587 72.087 73.087 -6.1757 0 0 0 0.038824 1 51578 51578 62.573 16.552 1 25640 3014;9881 17319 17656 30336 30336 0.061674866541807205 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5411987304688 3 383.541475 1147.60259 -0.45007 -0.00017262 0.25096 9.6253E-05 -0.19911 -7.6368E-05 383.5415193131517 36.476 0.26994 36.226 36.066 36.336 -0.2497 36 12 4 0 0 0 0.06294 1 19106 19106 45.74 18.517 1 19180000 25641 5237 17320 17657 30337 30337 0.03469718368660324 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8092041015625 2 574.808574 1147.60259 -0.30497 -0.0001753 0.52586 0.00030227 0.22089 0.00012697 574.8089747015949 36.476 0.20399 36.226 36.132 36.336 -0.2497 17 9 2 0 0 0 0.0074135 1 19125 19125 110.67 62.926 1 5445600 25642 5237 17320 17657 30338 30338 0.03469718368660324 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5413513183594 3 383.541475 1147.60259 -0.2139 -8.2039E-05 0.59223 0.00022715 0.37833 0.00014511 383.5416228446723 36.134 0.23882 36.159 36.033 36.272 0.024967 18 10 2 0 0 0 0.024882 1 19122 19122 45.74 24.15 1 8785400 25643 5237 17320 17657 30339 30339 0.03469718368660324 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8094482421875 2 574.808574 1147.60259 -0.075434 -4.336E-05 -0.66196 -0.0003805 -0.73739 -0.00042386 574.8093274606645 36.134 0.17547 36.159 36.075 36.25 0.024967 13 7 2 0 0 0 0.43463 1 19172 19172 10.824 6.8795 1 3008700 25644 5237 17320 17657 30340 30340 0.03469718368660324 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5415344238281 3 383.541475 1147.60259 0.79397 0.00030452 0.086867 3.3317E-05 0.88084 0.00033784 383.8758194221783 40.222 0.50977 35.693 35.54 36.05 -4.5294 85 38 3 0 0 0 0.047196 2 23920 23920;24061 49.554 19.714 1 69128000 25645 5237 17320 17657 30341;30342 30341 0.03469718368660324 IYQKAFEHL 9 Unmodified _IYQKAFEHL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8096313476562 2 574.808574 1147.60259 0.43242 0.00024856 0.22892 0.00013159 0.66134 0.00038015 574.808686832036 40.226 0.35197 35.697 35.566 35.918 -4.5294 50 27 3 0 0 0 0.0087807 2 24097 23943;24097 106.94 57.007 1 24597000 25646 5237 17320 17657 30343;30344 30344 0.03469718368660324 IYQKKYLLL 9 Unmodified _IYQKKYLLL_ 0 0 0 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5809326171875 3 394.58127 1180.72198 0.10283 4.0576E-05 -0.22929 -9.0473E-05 -0.12645 -4.9897E-05 394.58102901593173 48.914 0.29342 48.87 48.734 49.027 -0.04369 38 14 4 0 0 0 0.11784 1 26409 26409 31.268 11.906 1 7143100 25647 6716;4032 17321 17658 30345 30345 0.13884911993363858 IYQKKYLLL 9 Unmodified _IYQKKYLLL_ 0 0 0 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5814819335938 3 394.58127 1180.72198 0.1407 5.5519E-05 0.80434 0.00031738 0.94505 0.0003729 394.58151893748106 53.034 0.27326 52.971 52.863 53.136 -0.063423 31 13 3 0 0 0 0.52844 1 28733 28733 5.7319 1.5423 1 5960100 25648 6716;4032 17321 17658 30346 30346 0.13884911993363858 IYQKKYLLL 9 Unmodified _IYQKKYLLL_ 0 0 0 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF;ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT nc|ENSG00000127914|Q99996-5|AKAP9;ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS AL20221201_MKP_PDAC_01 4 394.5814819335938 3 394.58127 1180.72198 NaN NaN NaN NaN NaN NaN NaN 53.636 1 47.832 47.332 48.332 -5.8042 0 0 0 0.36957 1 33927 33927 21.537 0.95604 1 25649 6716;4032 17321 17658 30347 30347 0.13884911993363858 IYQKPFQTL 9 Unmodified _IYQKPFQTL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3201904296875 2 569.318774 1136.623 1.4271 0.00081246 0.27551 0.00015686 1.7026 0.00096931 569.3189796110049 46.692 0.2449 46.659 46.529 46.774 -0.033417 32 11 3 0 0 0 0.0081 1 25114 25114 114.65 76.473 1 13814000 25650 3470 17322 17659 30348 30348 0.06014889028483594 IYQKPFQTL 9 Unmodified _IYQKPFQTL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3204956054688 2 569.318774 1136.623 0.68692 0.00039108 0.49764 0.00028331 1.1846 0.00067439 569.3191773673592 52.212 0.32909 46.477 46.234 46.563 -5.7345 30 21 2 0 0 0 0.0040067 2 32822 32822;32965 147.06 86.67 1 45852000 25651 3470 17322 17659 30349;30350 30349 0.06014889028483594 IYQKRCEAF 9 Carbamidomethyl (C) _IYQKRC(Carbamidomethyl (C))EAF_ IYQKRC(1)EAF IYQKRC(66)EAF 0 1 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.802978515625 2 607.802965 1213.59138 -0.11727 -7.1276E-05 -0.80326 -0.00048822 -0.92053 -0.0005595 607.8026759678388 23.198 0.38328 20.42 20.203 20.586 -2.7784 103 33 4 0 0 0 0.017075 2 12445 12445;12554 66.457 28.281 1 67254000 25652 7097 17323 17660 30351;30352 30351 694 -0.006874269971376634 IYQKVRHRL 9 Unmodified _IYQKVRHRL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.9156799316406 3 404.915646 1211.72511 -0.16782 -6.7954E-05 0.76608 0.0003102 0.59826 0.00024224 404.915956429301 14.779 0.071926 14.785 14.723 14.795 0.0057774 4 2 2 0 0 0 0.41742 1 7346 7346 11.495 3.8858 1 1575000 25653 5461 17324 17661 30353 30353 0.12771599890766083 IYQKVRHRL 9 Unmodified _IYQKVRHRL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.9159240722656 3 404.915646 1211.72511 0.28221 0.00011427 0.86723 0.00035116 1.1494 0.00046543 404.9159849743066 15.391 0.22573 12.864 12.78 13.006 -2.5273 155 51 4 0 0 0 0.095405 2 7953 7849;7953 24.991 13.496 1 20361000 25654 5461 17324 17661 30354;30355 30355 0.12771599890766083 IYQKYIARF 9 Unmodified _IYQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.33984375 2 601.340041 1200.66553 0.16492 9.9175E-05 0.20843 0.00012534 0.37335 0.00022451 601.34017056369 40.882 0.30149 40.881 40.752 41.053 -0.0017929 46 14 4 0 0 0 0.0041763 2 21788 21788;21890 120.45 72.105 1 39536000 25655 4278;14369 17325 17662 30356;30357 30356 0.07322284156703063 IYQKYIARF 9 Unmodified _IYQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2290344238281 3 401.229119 1200.66553 0.11078 4.4448E-05 0.38886 0.00015602 0.49963 0.00020047 401.2292188573679 40.884 0.40471 40.882 40.711 41.115 -0.0017929 69 19 5 0 0 0 0.047196 1 21856 21856 41.956 23.582 1 142670000 25656 4278;14369 17325 17662 30358 30358 0.07322284156703063 IYQKYIARF 9 Unmodified _IYQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3396606445312 2 601.340041 1200.66553 -0.30689 -0.00018455 -0.81962 -0.00049287 -1.1265 -0.00067741 601.3392265099238 45.282 0.52719 40.327 40.086 40.613 -4.9549 89 35 3 0 0 0 0.0041763 3 27641 27641;27780;27922 120.45 84.323 1 83753000 25657 4278;14369 17325 17662 30359;30360;30361 30359 0.07322284156703063 IYQKYIARF 9 Unmodified _IYQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2296752929688 3 401.229119 1200.66553 0.47794 0.00019176 0.4369 0.0001753 0.91485 0.00036706 401.22927451012606 45.269 0.59696 40.314 40.059 40.656 -4.9549 140 40 4 0 0 0 0.0090851 3 27651 27651;27792;27935 75.761 54.224 1 280990000 25658 4278;14369 17325 17662 30362;30363;30364 30362 0.07322284156703063 IYQLDQGQP 9 Unmodified _IYQLDQGQP_ 0 0 0 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2673950195312 2 531.266739 1060.51892 0.34813 0.00018495 0.82909 0.00044047 1.1772 0.00062541 531.2670791935378 83.585 0.31441 83.585 83.444 83.759 0 34 16 3 0 0 0 0.46501 1 46412 46412 9.3831 0 1 1408700 + 25659 17478 17326 17663 30365 30365 -0.008914377990322464 IYQLRQSDL 9 Unmodified _IYQLRQSDL_ 0 0 0 REV__nc|ENSG00000151116|Q8IX04-7|UEVLD REV__nc|ENSG00000151116|Q8IX04-7|UEVLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2081909179688 3 379.208384 1134.60332 -0.55495 -0.00021044 -0.58828 -0.00022308 -1.1432 -0.00043352 379.2080838544385 29.774 0.33073 29.774 29.643 29.974 0 32 18 2 0 0 0 0.10734 1 15416 15416 23.79 0 1 11027000 + 25660 21049 17327 17664 30366 30366 0.04140513017705416 IYQLSRKQLHL 11 Unmodified _IYQLSRKQLHL_ 0 0 0 ENST00000463613.1_1_2:27693746-27694138:-|nuORF ENST00000463613.1_1_2:27693746-27694138:-|nuORF ENST00000463613.1_1_2:27693746-27694138:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 699.9146728515625 2 699.914436 1397.81432 NaN NaN NaN NaN NaN NaN NaN 98.779 1 92.604 92.104 93.104 -6.1757 0 0 0 0.84159 1 65579 65579 10.074 6.4774 1 25661 13700 17328 17665 30367 30367 0.13132390059627141 IYQMLKNLL 9 Oxidation (M) _IYQM(Oxidation (M))LKNLL_ IYQM(1)LKNLL IYQM(100)LKNLL 0 0 1 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3295288085938 2 576.328285 1150.64202 0.48418 0.00027905 -0.0092704 -5.3428E-06 0.47491 0.0002737 576.3283758420504 61.206 0.26 61.162 61.064 61.324 -0.04351 31 12 3 0 0 0 0.0088174 1 33400 33400 103.75 39.788 1 9534000 25662 2714 17329 17666 30368 30368 469 0.07272102327874563 IYQPCQRQF 9 Carbamidomethyl (C) _IYQPC(Carbamidomethyl (C))QRQF_ IYQPC(1)QRQF IYQPC(74)QRQF 0 1 0 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.3016357421875 2 620.30059 1238.58663 -0.22312 -0.0001384 1.4605 0.00090596 1.2374 0.00076756 620.3018486345285 33.167 0.25598 33.008 32.888 33.144 -0.15918 27 10 3 0 0 0 0.012148 1 17287 17287 74.423 49.023 1 2955800 25663 1255 17330 17667 30369 30369 113 -0.023123111398945184 IYQPCQRQF 9 Carbamidomethyl (C) _IYQPC(Carbamidomethyl (C))QRQF_ IYQPC(1)QRQF IYQPC(97)QRQF 0 1 0 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3007202148438 2 620.30059 1238.58663 1.0015 0.00062124 -0.62937 -0.0003904 0.37214 0.00023084 620.300367520752 37.607 0.42107 33.238 33.034 33.456 -4.3689 71 24 4 0 0 0 0.0083087 2 22122 21998;22122 104.8 66.825 1 51097000 25664 1255 17330 17667 30370;30371 30371 113 -0.023123111398945184 IYQPCQRQF 9 Carbamidomethyl (C) _IYQPC(Carbamidomethyl (C))QRQF_ 0 1 0 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 620.30059 1238.58663 0.20636 0.000128 0.54133 0.00033579 0.74769 0.00046379 620.8025751055799 32.971 0.18261 33.001 32.957 33.14 0.029747 -0.0812 0.00054059 NaN 104.8 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 767720 25665 1255 17330 17667 113 -0.023123111398945184 IYQQEGFLALY 11 Unmodified _IYQQEGFLALY_ 0 0 0 nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43;ENST00000488158.5_1_X:118533366-118560222:+|nuORF;ENST00000484058.1_1_X:118540546-118586853:+|nuORF nc|ENSG00000077713|Q8WUT9-2|SLC25A43 nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MSMS AL20221201_MKP_PDAC_01 4 672.8482055664062 2 672.845353 1343.67615 NaN NaN NaN NaN NaN NaN NaN 96.779 1 90.603 90.103 91.103 -6.1757 0 0 0 0.54872 1 64139 64139 22.736 1.1993 1 25666 1225 17331 17668 30372 30372 0.018062220204910773 IYQQIIQITST 11 Unmodified _IYQQIIQITST_ 0 0 0 ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF ENST00000432615.5_1_7:158447451-158457424:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.5784301757812 3 436.578365 1306.71327 0.36324 0.00015858 0.52626 0.00022975 0.8895 0.00038834 436.5786395497578 34.115 0.25076 34.144 34.036 34.287 0.028934 20 11 3 0 0 0 0.67477 1 17952 17952 6.6235 1.9075 1 2396600 25667 13278 17332 17669 30373 30373 0.07217893566235034 IYQQIIQTY 9 Unmodified _IYQQIIQTY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8150024414062 2 585.313689 1168.61282 -0.7837 -0.00045871 -0.00023464 -1.3734E-07 -0.78393 -0.00045885 585.8149312707109 56.491 0.085129 56.006 55.999 56.084 -0.48554 16 10 2 0 0 0 0.2546 1 30692 30692 26.884 6.43 1 15057000 25668 5809 17333 17670 30374 30374 0.03526281303243195 IYQQIIQTY 9 Unmodified _IYQQIIQTY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3175048828125 2 585.313689 1168.61282 1.308 0.00076561 1.8415 0.0010779 3.1496 0.0018435 585.3149491115803 63.982 0.43829 57.806 57.615 58.053 -6.1757 49 23 3 0 0 0 0.078314 1 41469 41469 50.855 20.218 1 34267000 25669 5809 17333 17670 30375 30375 0.03526281303243195 IYQQIIQTY 9 Unmodified _IYQQIIQTY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2 ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 585.313689 1168.61282 -0.022643 -1.3253E-05 -1.1612 -0.00067965 -1.1838 -0.0006929 585.3131012361303 56.245 0.22985 56.177 56.019 56.248 -0.068737 0.085453 -0.00068218 NaN 26.884 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3310200 25670 5809 17333 17670 0.03526281303243195 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5608215332031 3 382.560758 1144.66044 0.031575 1.2079E-05 0.68356 0.0002615 0.71513 0.00027358 382.56100102320113 39.843 0.35396 39.843 39.639 39.993 0 64 17 5 0 0 0 0.18255 2 21317 21317;21428 24.882 12.707 1 36697000 25671 7545 17334 17671 30376;30377 30376 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.337158203125 2 573.337498 1144.66044 0.35842 0.00020549 -0.010057 -5.7662E-06 0.34836 0.00019973 573.3374188613182 39.846 0.23228 39.846 39.7 39.932 0 27 11 3 0 0 0 0.022653 1 21356 21356 65.474 23.634 1 3113500 25672 7545 17334 17671 30378 30378 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3369750976562 2 573.337498 1144.66044 0.45115 0.00025866 -0.15264 -8.7514E-05 0.29851 0.00017115 573.3373592922753 40.111 0.39807 39.814 39.61 40.008 -0.29716 59 18 4 0 0 0 0.0082995 2 21135 21135;21236 90.135 40.202 1 54015000 25673 7545 17334 17671 30379;30380 30379 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5610656738281 3 382.560758 1144.66044 0.30049 0.00011495 -0.64861 -0.00024813 -0.34812 -0.00013318 382.560533377121 40.112 0.69207 39.815 39.548 40.24 -0.29716 124 32 6 0 0 0 0.18255 2 21309 21202;21309 24.882 9.1429 1 777260000 25674 7545 17334 17671 30381;30382 30382 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5606994628906 3 382.560758 1144.66044 0.29656 0.00011345 0.048748 1.8649E-05 0.34531 0.0001321 382.56077446875423 39.734 0.5458 39.739 39.522 40.068 0.0050583 93 25 5 0 0 0 0.065007 3 21098 21098;21195;21308 41.347 20.476 1 213490000 25675 7545 17334 17671 30383;30384;30385 30383 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3381958007812 2 573.337498 1144.66044 0.35128 0.0002014 0.54947 0.00031503 0.90075 0.00051643 573.3377209243342 39.756 0.37185 39.761 39.564 39.936 0.0050545 50 17 4 0 0 0 0.0086493 2 21140 21140;21242 100.09 50.158 1 12522000 25676 7545 17334 17671 30386;30387 30386 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5610961914062 3 382.560758 1144.66044 0.9699 0.00037105 -0.53347 -0.00020408 0.43643 0.00016696 382.560419205111 44.171 0.79328 39.319 39.022 39.815 -4.852 224 58 5 0 0 0 0.082934 5 27282 26763;26898;27026;27161;27282 37.075 15.031 1 2553100000 25677 7545 17334 17671 30388;30389;30390;30391;30392 30392 0.0938998029407685 IYQRDPLKL 9 Unmodified _IYQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.3377075195312 2 573.337498 1144.66044 0.6151 0.00035266 0.040615 2.3286E-05 0.65572 0.00037595 573.3374399949951 44.217 0.63609 39.364 39.052 39.688 -4.852 148 44 4 0 0 0 0.0082995 4 26933 26801;26933;27064;27194 100.09 58.251 1 582380000 25678 7545 17334 17671 30393;30394;30395;30396 30394 0.0938998029407685 IYQREWQRF 9 Unmodified _IYQREWQRF_ 0 0 0 nc|ENSG00000113812|Q9H981-2|ACTR8;ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-3|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.8975830078125 3 442.563161 1324.66765 0.20586 9.1104E-05 -0.47737 -0.00021127 -0.27151 -0.00012016 442.56305533248025 37.545 0.25703 37.562 37.416 37.673 0.01704 30 12 3 0 0 0 0.0082661 1 19916 19916 74.2 53.619 1 12045000 25679 3005 17335 17672 30397 30397 0.018307128945025397 IYQREWQRF 9 Unmodified _IYQREWQRF_ 0 0 0 nc|ENSG00000113812|Q9H981-2|ACTR8;ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-3|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.5630798339844 3 442.563161 1324.66765 1.7776 0.00078671 -1.0689 -0.00047305 0.70874 0.00031366 442.8971735338225 41.736 0.37462 37.128 36.936 37.311 -4.6079 55 23 3 0 0 0 0.07087 1 25062 25062 30.703 12.84 1 17338000 25680 3005 17335 17672 30398 30398 0.018307128945025397 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.5527038574219 3 402.552374 1204.63529 0.66929 0.00026943 -0.67385 -0.00027126 -0.0045595 -1.8354E-06 402.55199703060845 29.685 0.2105 29.605 29.481 29.691 -0.080431 23 9 4 0 0 0 0.05483 1 15345 15345 43.772 17.775 1 59171000 25681 5803 17336 17673 30399 30399 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3245849609375 2 603.324922 1204.63529 0.63621 0.00038384 -0.43529 -0.00026262 0.20092 0.00012122 603.3246159299616 29.676 0.12252 29.595 29.501 29.624 -0.080431 11 4 3 0 0 0 0.0024112 1 15360 15360 120.45 82.275 1 6559300 25682 5803 17336 17673 30400 30400 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.5518188476562 3 402.552374 1204.63529 -0.16711 -6.727E-05 -0.38349 -0.00015437 -0.5506 -0.00022165 402.5522343652132 29.471 0.18741 29.501 29.402 29.589 0.030106 29 9 4 0 0 0 0.10247 1 15360 15360 32.786 16.22 1 51389000 25683 5803 17336 17673 30401 30401 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3248901367188 2 603.324922 1204.63529 -0.069281 -4.1799E-05 -0.65984 -0.0003981 -0.72912 -0.0004399 603.3247872560733 29.468 0.15682 29.498 29.432 29.589 0.030106 17 7 3 0 0 0 0.0038489 1 15385 15385 125.62 78.03 1 7634200 25684 5803 17336 17673 30402 30402 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3248291015625 2 603.324922 1204.63529 -0.061941 -3.737E-05 0.13408 8.0893E-05 0.072138 4.3523E-05 603.3250695083187 32.893 0.35491 29.037 28.832 29.187 -3.8562 53 20 3 0 0 0 0.0013034 2 18833 18702;18833 141.83 92.272 1 93964000 25685 5803 17336 17673 30403;30404 30404 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5525817871094 3 402.552374 1204.63529 0.59672 0.00024021 0.25154 0.00010126 0.84825 0.00034147 402.55246822337756 32.885 0.40588 29.028 28.796 29.202 -3.8562 83 23 5 0 0 0 0.10247 2 18846 18712;18846 32.786 18.568 1 338800000 25686 5803 17336 17673 30405;30406 30406 0.04115925491510097 IYQRHVYNL 9 Unmodified _IYQRHVYNL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 402.552374 1204.63529 -0.55118 -0.00022188 0.031695 1.2759E-05 -0.51949 -0.00020912 402.5525199268016 29.712 0.099174 29.712 29.643 29.742 0 0.10605 0.0005621 NaN 43.772 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1074000 25687 5803 17336 17673 0.04115925491510097 IYQRNTLQI 9 Unmodified _IYQRNTLQI_ 0 0 0 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8253173828125 2 574.824755 1147.63496 0.46897 0.00026957 0.82401 0.00047366 1.293 0.00074324 574.8251003522345 59.531 0.37885 59.04 58.792 59.171 -0.49079 39 17 3 0 0 0 0.38785 1 32380 32380 13.042 0.80181 1 5623900 25688 10643 17337 17674 30407 30407 0.0670450577167685 IYQRNTLQI 9 Unmodified _IYQRNTLQI_ 0 0 0 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.824755 1147.63496 0.46897 0.00026957 0.82401 0.00047366 1.293 0.00074324 574.8251003522345 59.531 0.37885 59.04 58.792 59.171 -0.49079 -0.04339 -0.00048021 NaN 13.042 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5623900 25689 10643 17337 17674 0.0670450577167685 IYQRNTLQI 9 Unmodified _IYQRNTLQI_ 0 0 0 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 ENSG00000236027|ENST00000445202|PATE3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.824755 1147.63496 0.4997 0.00028724 2.312 0.001329 2.8117 0.0016163 575.3281748328951 59.184 0.24445 59.127 58.924 59.169 -0.057903 0.04339 0.0012305 NaN 13.042 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2453700 25690 10643 17337 17674 0.0670450577167685 IYQRWKDLL 9 Unmodified _IYQRWKDLL_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.8515625 2 617.850773 1233.68699 0.6034 0.00037281 0.054551 3.3704E-05 0.65795 0.00040652 617.8507316824417 54.823 0.37883 54.756 54.622 55.001 -0.066936 40 18 3 0 0 0 0.0081437 1 29761 29761 103.42 47.917 1 15087000 25691 8680 17338 17675 30408 30408 0.0794966918542741 IYQRWKDLL 9 Unmodified _IYQRWKDLL_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.236572265625 3 412.236274 1233.68699 0.18003 7.4214E-05 0.3927 0.00016188 0.57272 0.0002361 412.23643205717065 54.824 0.40207 54.757 54.579 54.981 -0.066936 74 19 5 0 0 0 0.20389 1 29826 29826 22.775 4.9118 1 143520000 25692 8680 17338 17675 30409 30409 0.0794966918542741 IYQRWKDLL 9 Unmodified _IYQRWKDLL_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2371215820312 3 412.236274 1233.68699 1.3735 0.00056619 0.11083 4.5689E-05 1.4843 0.00061188 412.2362914845015 86.353 0.87926 80.177 79.709 80.588 -6.1757 130 47 3 0 0 0 0.21589 2 56810 56678;56810 21.59 2.8689 1 151510000 25693 8680 17338 17675 30410;30411 30411 0.0794966918542741 IYQRWKDLL 9 Unmodified _IYQRWKDLL_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8516235351562 2 617.850773 1233.68699 1.0124 0.00062553 0.21245 0.00013126 1.2249 0.0007568 617.8509078348848 86.368 0.71294 80.193 79.76 80.473 -6.1757 95 38 3 0 0 0 0.0071813 3 57008 56753;56888;57008 133.05 63.947 1 41342000 25694 8680 17338 17675 30412;30413;30414 30414 0.0794966918542741 IYQTVMLRH 9 Unmodified _IYQTVMLRH_ 0 0 0 ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000135503|P36896-4|ACVR1B;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000123612|Q8NER5-4|ACVR1C;ENSG00000123612|ENST00000243349|ACVR1C ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000123612|Q8NER5-3|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C MSMS AL20221201_MKP_PDAC_01 4 387.2080993652344 3 387.546343 1159.6172 NaN NaN NaN NaN NaN NaN NaN 44.693 1 39.841 39.341 40.341 -4.852 0 0 0 0.67877 1 27314 27314 10.151 0 1 25695 16166;2460 17339 17676 30415 30415 0.043774672451490915 IYQVKQQRL 9 Unmodified _IYQVKQQRL_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1;ENST00000523043.5_1_5:167798471-167835524:+|nuORF nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.9041442871094 3 392.568024 1174.68224 1.0254 0.00040255 2.0425 0.0008018 3.0679 0.0012043 392.9036797618872 28.717 0.27527 25.569 25.358 25.633 -3.1482 21 13 2 0 0 0 0.042911 1 16014 16014 51.63 37.724 1 7709800 25696 2986 17340 17677 30416 30416 0.10188785042646487 IYQVSYFSF 9 Unmodified _IYQVSYFSF_ 0 0 0 nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 nc|ENSG00000115977|Q2M2I8-2|AAK1 MSMS AL20221201_MKP_PDAC_01 4 577.28125 2 577.281857 1152.54916 NaN NaN NaN NaN NaN NaN NaN 89.326 1 83.15 82.65 83.65 -6.1757 0 0 0 0.22437 1 58963 58963 29.082 0.90835 1 25697 3182 17341 17678 30417 30417 -0.021010791338540002 IYQWDKEKQLF 11 Unmodified _IYQWDKEKQLF_ 0 0 0 ENSG00000153012|ENST00000382114|LGI2 ENSG00000153012|ENST00000382114|LGI2 ENSG00000153012|ENST00000382114|LGI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 749.3890380859375 2 749.390459 1496.76637 NaN NaN NaN NaN NaN NaN NaN 75.146 1 75.192 74.692 75.692 0.045959 0 0 0 0.94144 1 41435 41435 1.4819 0 1 25698 6228 17342 17679 30418 30418 0.037852713488746303 IYQWICDNF 9 Carbamidomethyl (C) _IYQWIC(Carbamidomethyl (C))DNF_ IYQWIC(1)DNF IYQWIC(74)DNF 0 1 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.7819213867188 2 629.781699 1257.54884 1.0528 0.00066301 -0.62574 -0.00039408 0.42701 0.00026893 629.7812522095209 87.894 0.7484 81.718 81.312 82.06 -6.1757 100 41 3 0 0 0 0.012148 3 58023 57775;57903;58023 74.423 60.915 1 50905000 25699 10161 17343 17680 30419;30420;30421 30421 920 -0.06962822125387902 IYQYIQSRF 9 Unmodified _IYQYIQSRF_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3193969726562 2 609.319306 1216.62406 0.26487 0.00016139 -0.46503 -0.00028335 -0.20016 -0.00012196 609.3189534485058 51.111 0.30513 51.058 50.882 51.187 -0.053871 55 14 5 0 0 0 0.052231 1 27632 27632 55.503 21.101 1 38056000 25700 2288 17344 17681 30422 30422 0.024411033973592566 IYQYIQSRF 9 Unmodified _IYQYIQSRF_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3194580078125 2 609.319306 1216.62406 0.56766 0.00034589 -0.22288 -0.0001358 0.34479 0.00021008 609.3190238254109 56.953 0.49635 50.976 50.755 51.252 -5.9769 76 29 3 0 0 0 0.0085857 2 36447 36306;36447 122.18 56.944 1 83094000 25701 2288 17344 17681 30423;30424 30424 0.024411033973592566 IYQYIQSRF 9 Unmodified _IYQYIQSRF_ 0 0 0 nc|ENSG00000157540|Q13627-4|DYRK1A;nc|ENSG00000157540|Q13627-3|DYRK1A;nc|ENSG00000157540|Q13627-5|DYRK1A;nc|ENSG00000105204|Q9Y463-2|DYRK1B;nc|ENSG00000105204|Q9Y463-3|DYRK1B;ENSG00000105204|ENST00000323039|DYRK1B;ENSG00000157540|ENST00000647188|DYRK1A;nc|ENSG00000157540|Q13627|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A nc|ENSG00000157540|Q13627-4|DYRK1A MSMS AL20221201_MKP_PDAC_01 4 609.3197021484375 2 609.319306 1216.62406 NaN NaN NaN NaN NaN NaN NaN 57.237 1 51.209 50.709 51.709 -6.0275 0 0 0 0.010776 1 36598 36598 110.67 58.406 1 25702 2288 17344 17681 30425 30425 0.024411033973592566 IYRAQLELF 9 Unmodified _IYRAQLELF_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8243408203125 2 576.824224 1151.63389 0.52055 0.00030026 -1.7432 -0.0010055 -1.2227 -0.00070527 576.823329443587 68.525 0.37589 68.044 67.804 68.18 -0.48071 35 16 3 0 0 0 0.044011 1 37466 37466 47.749 17.112 1 5905100 25703 6405 17345 17682 30426 30426 0.06414291402734307 IYRAQLELF 9 Unmodified _IYRAQLELF_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8245239257812 2 576.824224 1151.63389 0.59571 0.00034362 -3.2938 -0.0018999 -2.6981 -0.0015563 576.8224016586403 68.007 0.46811 68.032 67.755 68.223 0.025146 62 22 4 0 0 0 0.018301 1 37350 37350 65.235 37.606 1 21327000 25704 6405 17345 17682 30427 30427 0.06414291402734307 IYRDERSI 8 Unmodified _IYRDERSI_ 0 0 0 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 MSMS AL20221201_MKP_PDAC_01 4 526.283935546875 2 526.28018 1050.54581 NaN NaN NaN NaN NaN NaN NaN 93.67 1 87.494 86.994 87.994 -6.1757 0 0 0 0.9192 1 62014 62014 16.942 1.0951 1 + 25705 18691 17346 17683 30428 30428 0.022556708121328484 IYRDLAMD 8 Unmodified _IYRDLAMD_ 0 0 0 REV__ENSG00000177476|ENST00000320002|OR2G3 REV__ENSG00000177476|ENST00000320002|OR2G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7449035644531 2 498.744585 995.474617 -0.12472 -6.2202E-05 -0.52241 -0.00026055 -0.64713 -0.00032275 498.74398154327656 84.902 0.32052 84.965 84.814 85.135 0.063171 22 13 2 0 0 0 0.72664 1 47005 47005 14.838 6.245 1 17900000 + 25706 22986 17347 17684 30429 30429 -0.023301652168925102 IYRDLAMD 8 Unmodified _IYRDLAMD_ 0 0 0 REV__ENSG00000177476|ENST00000320002|OR2G3 REV__ENSG00000177476|ENST00000320002|OR2G3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.744585 995.474617 -0.12472 -6.2202E-05 -0.52241 -0.00026055 -0.64713 -0.00032275 498.74398154327656 84.902 0.32052 84.965 84.814 85.135 0.063171 0 0 NaN 14.838 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 17900000 + 25707 22986 17347 17684 -0.023301652168925102 IYREFREEESL 11 Unmodified _IYREFREEESL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.9120483398438 3 490.912296 1469.71506 0.4191 0.00020574 -0.79453 -0.00039004 -0.37543 -0.0001843 490.91179460633197 36.176 0.23672 36.176 36.053 36.29 0 38 11 4 0 0 0 0.31264 1 19144 19144 26.121 17.369 1 48582000 25708 10766 17348 17685 30430 30430 -0.0010109741579071851 IYREFREEESL 11 Unmodified _IYREFREEESL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 735.8639526367188 2 735.864805 1469.71506 0.22574 0.00016611 -0.51282 -0.00037736 -0.28708 -0.00021125 735.8640279358198 36.181 0.19419 36.181 36.074 36.269 0 21 9 3 0 0 0 0.012962 1 19178 19178 53.317 18.385 1 6624400 25709 10766 17348 17685 30431 30431 -0.0010109741579071851 IYREFREEESL 11 Unmodified _IYREFREEESL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.9122009277344 3 490.912296 1469.71506 -0.2688 -0.00013196 0.34942 0.00017154 0.080624 3.9579E-05 490.9123222045575 36.542 0.18917 36.292 36.193 36.383 -0.2497 22 8 3 0 0 0 0.17474 1 19173 19173 33.821 27.198 1 8105900 25710 10766 17348 17685 30432 30432 -0.0010109741579071851 IYREFREEESL 11 Unmodified _IYREFREEESL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9122924804688 3 490.912296 1469.71506 0.41565 0.00020405 0.45501 0.00022337 0.87067 0.00042742 490.9125462616038 41.233 0.38325 36.625 36.449 36.833 -4.6079 67 23 4 0 0 0 0.12206 2 24814 24674;24814 39.923 29.608 1 75091000 25711 10766 17348 17685 30433;30434 30434 -0.0010109741579071851 IYREFREEESL 11 Unmodified _IYREFREEESL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 735.865478515625 2 735.864805 1469.71506 0.36737 0.00027034 0.56869 0.00041848 0.93607 0.00068882 735.8653945061844 41.24 0.27015 36.632 36.484 36.754 -4.6079 31 16 3 0 0 0 0.016454 1 24702 24702 49.527 32.414 1 11059000 25712 10766 17348 17685 30435 30435 -0.0010109741579071851 IYREPEKF 8 Unmodified _IYREPEKF_ 0 0 0 REV__nc|ENSG00000203808|Q5T3Y7|BVES-AS1 REV__nc|ENSG00000203808|Q5T3Y7|BVES-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1946716308594 3 361.194075 1080.5604 0.62533 0.00022586 -0.11632 -4.2015E-05 0.509 0.00018385 361.19411204105216 29.723 0.18968 29.642 29.501 29.691 -0.080429 13 8 2 0 0 0 0.80447 1 15384 15384 3.9444 0.87213 1 14802000 + 25713 29903 17349 17686 30436 30436 0.023337429602634074 IYREPEKF 8 Unmodified _IYREPEKF_ 0 0 0 REV__nc|ENSG00000203808|Q5T3Y7|BVES-AS1 REV__nc|ENSG00000203808|Q5T3Y7|BVES-AS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1942749023438 3 361.194075 1080.5604 1.8423 0.00066542 0.28339 0.00010236 2.1257 0.00076778 361.19394989156035 33.581 0.72302 29.596 29.299 30.022 -3.9853 140 40 4 0 0 0 0.80447 1 19513 19513 3.9444 0.3479 1 432770000 + 25714 29903 17349 17686 30437 30437 0.023337429602634074 IYRFTTSDYI 10 Unmodified _IYRFTTSDYI_ 0 0 0 REV__ENSG00000084453|ENST00000683939|SLCO1A2 REV__ENSG00000084453|ENST00000683939|SLCO1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3246459960938 2 639.821878 1277.6292 0.21136 0.00013523 -0.34934 -0.00022352 -0.13798 -8.8284E-05 639.8210366857824 89.355 0.33546 88.853 88.665 89.001 -0.50171 30 14 3 0 0 0 0.70951 1 48898 48898 1.8442 0 1 947550 + 25715 17734 17350 17687 30438 30438 0.0014936246934666997 IYRHFFGHTF 10 Unmodified _IYRHFFGHTF_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2241821289062 3 442.224368 1323.65128 0.10662 4.715E-05 -0.28472 -0.00012591 -0.1781 -7.8761E-05 442.22429978508023 41.821 0.20071 41.816 41.718 41.919 -0.005043 20 9 3 0 0 0 0.10424 1 22394 22394 39.213 27.695 1 6133600 25716 10833 17351 17688 30439 30439 0.0023963172841376945 IYRIFSHAYF 10 Unmodified _IYRIFSHAYF_ 0 0 0 nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4 nc|ENSG00000115540|Q9Y3A3-2|MOB4 nc|ENSG00000115540|Q9Y3A3-2|MOB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.5643005371094 3 439.564391 1315.67134 0.55831 0.00024542 -0.015333 -6.74E-06 0.54298 0.00023868 439.5641259694261 60.216 0.22359 60.163 60.036 60.259 -0.053062 20 12 2 0 0 0 0.17714 1 32815 32815 37.771 30.734 1 10751000 25717 3134 17352 17689 30440 30440 0.02613382668369013 IYRIIEARGR 10 Unmodified _IYRIIEARGR_ 0 0 0 REV__ENSG00000163106|ENST00000295256|HPGDS REV__ENSG00000163106|ENST00000295256|HPGDS MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8721313476562 2 623.872571 1245.73059 1.0539 0.00065753 -2.1288 -0.0013281 -1.0749 -0.00067059 623.8712151930057 101.11 0.10672 94.936 94.85 94.956 -6.1757 13 5 3 0 0 0 0.63399 1 67785 67785 9.3831 2.66 1 21163000 + 25718 21727 17353 17690 30441 30441 0.117552786825172 IYRKGTISF 9 Unmodified _IYRKGTISF_ 0 0 0 ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5 ENST00000527544.5_1_11:65480238-65482390:+|nuORF ENST00000527544.5_1_11:65480238-65482390:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2101745605469 3 362.209836 1083.60768 1.7295 0.00062646 -0.36372 -0.00013174 1.3658 0.00049471 362.2094381927224 37.982 0.31287 33.613 33.437 33.75 -4.3689 31 18 2 0 0 0 0.23158 1 22310 22310 14.405 4.2548 1 12421000 25719 8276 17354 17691 30442 30442 0.06922022231287883 IYRKGTISF 9 Unmodified _IYRKGTISF_ 0 0 0 ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5 ENST00000527544.5_1_11:65480238-65482390:+|nuORF ENST00000527544.5_1_11:65480238-65482390:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8117065429688 2 542.811116 1083.60768 0.95478 0.00051827 -0.42995 -0.00023338 0.52483 0.00028488 542.8108068041727 37.957 0.19835 33.588 33.473 33.671 -4.3689 18 11 2 0 0 0 0.026499 1 22346 22346 57.249 32.258 1 4847900 25720 8276 17354 17691 30443 30443 0.06922022231287883 IYRKMNRAR 9 Unmodified _IYRKMNRAR_ 0 0 0 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2349548339844 3 403.23287 1206.67678 NaN NaN NaN NaN NaN NaN NaN 19.888 1 19.917 19.417 20.417 0.028357 0 0 0 0.85359 1 10050 10050 1.0715 0.29493 1 + 25721 18670 17355 17692 30444 30444 0.08170782979186697 IYRKYVPY 8 Unmodified _IYRKYVPY_ 0 0 0 nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000519544.5_1_5:153755916-153785640:+|nuORF;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;ENST00000517958.1_1_5:153783663-153789251:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8746337890625 3 367.874565 1100.60187 -0.45776 -0.0001684 -0.54406 -0.00020015 -1.0018 -0.00036855 367.87454075798513 19.903 0.1445 19.903 19.815 19.959 0 23 16 2 0 0 0 0.80722 1 9969 9969 1.4819 0 1 690780 25722 7206;8423 17356 17693 30445 30445 0.055589237196272734 IYRNERVAL 9 Unmodified _IYRNERVAL_ 0 0 0 REV__nc|ENSG00000013275|P43686-2|PSMC4 REV__nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3272705078125 2 567.324922 1132.63529 1.6204 0.00091931 1.6673 0.00094589 3.2877 0.0018652 567.3265037836806 58.913 0.30157 52.839 52.618 52.92 -6.0745 28 16 3 0 0 0 0.15882 1 37783 37783 22.736 2.3217 1 80787000 + 25723 17070 17357 17694 30446 30446 0.07427925491515452 IYRNERVAL 9 Unmodified _IYRNERVAL_ 0 0 0 REV__nc|ENSG00000013275|P43686-2|PSMC4 REV__nc|ENSG00000013275|P43686-2|PSMC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.7885131835938 2 567.324922 1132.63529 1.6204 0.00091931 1.6673 0.00094589 3.2877 0.0018652 567.3265037836806 58.913 0.30157 52.839 52.618 52.92 -6.0745 28 16 3 0 0 0 0.13704 1 37824 37824 32.786 4.2988 1 80787000 + 25724 17070 17357 17694 30447 30447 0.07427925491515452 IYRPYRLM 8 Unmodified _IYRPYRLM_ 0 0 0 REV__ENSG00000186141|ENST00000334163|POLR3C REV__ENSG00000186141|ENST00000334163|POLR3C MSMS AL20221201_MKP_PDAC_01 4 556.3101196289062 2 556.307687 1110.60082 NaN NaN NaN NaN NaN NaN NaN 79.79 1 73.614 73.114 74.114 -6.1757 0 0 0 0.63034 1 52315 52315 32.117 0 1 + 25725 23554 17358 17695 30448 30448 0.04994386079033575 IYRRPLGF 8 Unmodified _IYRRPLGF_ 0 0 0 REV__ENSG00000091664|ENST00000263160|SLC17A6 REV__ENSG00000091664|ENST00000263160|SLC17A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7695922851562 2 511.300719 1020.58688 1.0373 0.00053038 -0.33689 -0.00017225 0.70043 0.00035813 511.30087242217394 52.616 0.20375 52.557 52.446 52.65 -0.058918 13 9 2 0 0 0 8.7369 1 28540 28540 14.582 0 1 900430 + 25726 17897 17359 17696 30449 30449 0.07741476642286216 IYRWFNISF 9 Unmodified _IYRWFNISF_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.324462890625 2 623.324391 1244.63423 1.4009 0.00087321 -1.1531 -0.00071877 0.24776 0.00015444 623.3235947367923 91.759 0.27527 91.795 91.669 91.944 0.035591 21 9 3 0 0 0 0.0085366 1 51050 51050 88.954 63.963 1 7977600 25727 7561 17360 17697 30450 30450 0.021697111225876142 IYRWFNISF 9 Unmodified _IYRWFNISF_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.3250732421875 2 623.324391 1244.63423 0.37454 0.00023346 -0.16597 -0.00010345 0.20857 0.00013001 623.3245758445378 99.599 0.15369 93.424 93.354 93.508 -6.1757 21 9 3 0 0 0 0.0039711 1 66375 66375 136.33 65.618 1 43162000 25728 7561 17360 17697 30451 30451 0.021697111225876142 IYRYHTNL 8 Unmodified _IYRYHTNL_ 0 0 0 REV__ENSG00000143314|ENST00000361531|MRPL24 REV__ENSG00000143314|ENST00000361531|MRPL24 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7462768554688 2 540.285266 1078.55598 0.95382 0.00051533 -1.2051 -0.00065108 -0.25125 -0.00013575 540.2849689046428 54.45 0.17626 54.45 54.352 54.528 0 10 7 2 0 0 0 8.7369 1 30224 30224 15.768 0 1 1412700 + 25729 20621 17361 17698 30452 30452 0.01984278537361206 IYSAERFLI 9 Unmodified _IYSAERFLI_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3095092773438 2 556.310949 1110.60735 0.49175 0.00027357 1.1627 0.0006468 1.6544 0.00092037 556.3116594193888 66.888 0.35349 66.405 66.216 66.569 -0.48323 53 16 4 0 0 0 0.12632 2 36484 36484;36586 38.615 15.878 1 19271000 25730 10091 17362 17699 30453;30454 30453 0.0564660251143323 IYSAERFLI 9 Unmodified _IYSAERFLI_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.310791015625 2 556.310949 1110.60735 1.2625 0.00070233 1.2203 0.00067885 2.4827 0.0013812 556.3116263017048 66.38 0.37939 66.39 66.202 66.582 0.0095596 62 18 5 0 0 0 0.030186 2 36363 36363;36464 67.838 33.436 1 99364000 25731 10091 17362 17699 30455;30456 30455 0.0564660251143323 IYSAERFLI 9 Unmodified _IYSAERFLI_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3123168945312 2 556.310949 1110.60735 1.1886 0.00066122 1.7409 0.0009685 2.9295 0.0016297 556.3118146639741 71.008 0.94791 64.832 64.533 65.481 -6.1757 56 47 2 0 0 0 0.010362 1 46445 46445 86.332 34.063 1 26918000 25732 10091 17362 17699 30457 30457 0.0564660251143323 IYSAERFLI 9 Unmodified _IYSAERFLI_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MSMS AL20221201_MKP_PDAC_01 4 556.3116455078125 2 556.310949 1110.60735 NaN NaN NaN NaN NaN NaN NaN 74.55 1 68.374 67.874 68.874 -6.1757 0 0 0 0.081826 1 48740 48740 59.368 19.411 1 25733 10091 17362 17699 30458 30458 0.0564660251143323 IYSAERFLI 9 Unmodified _IYSAERFLI_ 0 0 0 nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 556.310949 1110.60735 0.49175 0.00027357 1.1627 0.0006468 1.6544 0.00092037 556.3116594193888 66.888 0.35349 66.405 66.216 66.569 -0.48323 0.0076644 -4.198E-05 NaN 67.838 53 16 4 NaN NaN NaN NaN 0 NaN NaN 0 19271000 25734 10091 17362 17699 0.0564660251143323 IYSAFRDN 8 Unmodified _IYSAFRDN_ 0 0 0 REV__nc|ENSG00000131095|P14136-3|GFAP REV__nc|ENSG00000131095|P14136-3|GFAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2420349121094 2 493.240524 984.466495 NaN NaN NaN NaN NaN NaN NaN 24.575 1 24.575 24.075 25.075 0 0 0 0 0.95607 1 12564 12564 9.3474 0.75416 1 + 25735 19771 17363 17700 30459 30459 -0.026359761420053474 IYSDDLGVTW 10 Unmodified _IYSDDLGVTW_ 0 0 0 nc|ENSG00000162139|Q9UQ49|NEU3;ENSG00000162139|ENST00000294064|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 nc|ENSG00000162139|Q9UQ49|NEU3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7802124023438 2 584.779679 1167.5448 0.59116 0.0003457 -4.0446 -0.0023652 -3.4534 -0.0020195 584.778637296908 73.74 0.17886 73.264 73.144 73.323 -0.47588 15 7 3 0 0 0 0.69064 1 40379 40379 3.9444 1.3669 1 1082600 25736 6837 17364 17701 30460 30460 -0.0322658834743379 IYSDLADLTL 10 Unmodified _IYSDLADLTL_ 0 0 0 nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2969360351562 2 562.297704 1122.58086 0.68452 0.0003849 0.21313 0.00011984 0.89765 0.00050474 562.2977041312347 84.6 0.25484 84.1 83.998 84.253 -0.49961 21 11 2 0 0 0 0.42068 1 46349 46349 20.454 6.9457 1 592990 25737 2816 17365 17702 30461 30461 0.024468688294291496 IYSDLADLTL 10 Unmodified _IYSDLADLTL_ 0 0 0 nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 562.297704 1122.58086 0.33619 0.00018904 -0.36696 -0.00020634 -0.030774 -1.7304E-05 562.2975227356774 84.111 0.20448 84.111 84.044 84.248 0 0.0054735 -0.00027228 NaN 20.454 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 416620 25738 2816 17365 17702 0.024468688294291496 IYSDTQFPSL 10 Unmodified _IYSDTQFPSL_ 0 0 0 nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7871704101562 2 585.787504 1169.56045 0.064836 3.798E-05 1.3563 0.00079453 1.4212 0.00083251 585.7884740031536 69.045 0.38686 68.565 68.376 68.763 -0.48071 39 16 3 0 0 0 0.18439 2 37720 37720;37825 49.933 31.798 1 4600200 25739 1589 17366 17703 30462;30463 30462 -0.017543018303967983 IYSDTQFPSL 10 Unmodified _IYSDTQFPSL_ 0 0 0 nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2885131835938 2 585.787504 1169.56045 0.67107 0.00039311 0.93985 0.00055055 1.6109 0.00094366 585.7880749234516 76.267 0.4131 70.091 69.787 70.201 -6.1757 35 22 2 0 0 0 0.095172 1 49923 49923 65.235 37.606 1 11761000 25740 1589 17366 17703 30464 30464 -0.017543018303967983 IYSDTQFPSL 10 Unmodified _IYSDTQFPSL_ 0 0 0 nc|ENSG00000091527|Q9UKY7-3|CDV3;nc|ENSG00000091527|Q9UKY7-2|CDV3;ENSG00000091527|ENST00000264993|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 nc|ENSG00000091527|Q9UKY7-3|CDV3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 585.787504 1169.56045 0.23071 0.00013515 1.1912 0.00069782 1.422 0.00083297 585.7881793289067 68.488 0.26492 68.488 68.391 68.656 0 -0.038428 -0.00015057 NaN 49.933 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 407240 25741 1589 17366 17703 -0.017543018303967983 IYSEFRKN 8 Unmodified _IYSEFRKN_ 0 0 0 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7770385742188 2 528.777274 1055.53999 0.028987 1.5328E-05 0.4614 0.00024398 0.49039 0.00025931 528.777527227838 41.255 0.22307 41.254 41.115 41.338 -0.0017929 24 10 3 0 0 0 0.44629 1 22017 22017 39.957 1.9833 1 5262900 25742 2042 17367 17704 30465 30465 0.014445723004882893 IYSEMIHNL 9 Oxidation (M) _IYSEM(Oxidation (M))IHNL_ IYSEM(1)IHNL IYSEM(50)IHNL 0 0 1 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2760620117188 2 568.276249 1134.53795 0.47006 0.00026712 -0.66242 -0.00037644 -0.19237 -0.00010932 568.2758690937452 40.118 0.16417 39.82 39.759 39.923 -0.29716 13 7 2 0 0 0 0.039985 1 21209 21209 49.933 23.049 1 2118600 25743 1343 17368 17705 30466 30466 226 -0.02394224499653319 IYSEMIHNL 9 Oxidation (M) _IYSEM(Oxidation (M))IHNL_ 0 0 1 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.276249 1134.53795 0.32451 0.00018441 0.32111 0.00018248 0.64562 0.00036689 568.2753429176212 39.77 0.29858 39.77 39.575 39.873 0 -0.025184 0.00082298 NaN 49.933 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5269400 25744 1343 17368 17705 226 -0.02394224499653319 IYSETNNVY 9 Unmodified _IYSETNNVY_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7517700195312 2 551.756204 1101.49785 0.84815 0.00046797 -1.329 -0.00073326 -0.4808 -0.00026528 551.751443312253 36.173 0.53828 31.98 31.664 32.202 -4.1928 62 32 3 0 0 0 0.1773 1 20958 20958 25.399 1.3787 1 26478000 + 25745 17002 17369 17706 30467 30467 -0.0488344789855546 IYSETNNVY 9 Unmodified _IYSETNNVY_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 551.756204 1101.49785 0.27565 0.00015209 -5.9131 -0.0032626 -5.6375 -0.0031105 551.7530540712107 31.583 0.19892 31.583 31.482 31.681 0 -0.19861 -0.0010907 NaN 25.399 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1255400 + 25746 17002 17369 17706 -0.0488344789855546 IYSETSGHF 9 Unmodified _IYSETSGHF_ 0 0 0 ENSG00000109511|ENST00000359299|ANXA10;ENST00000507278.5_1_4:169086345-169108582:+|nuORF ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.26025390625 2 520.737814 1039.46108 1.478 0.00076963 0.71979 0.00037482 2.1978 0.0011445 520.7380493518123 33.769 0.32127 29.784 29.608 29.929 -3.9853 20 17 2 0 0 0 0.11012 1 19382 19382 36.044 19.102 1 8147800 25747 2654 17370 17707 30468 30468 -0.05707699724462145 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7844848632812 2 504.784233 1007.55391 0.54748 0.00027636 0.7581 0.00038268 1.3056 0.00065903 504.784519552632 75.373 0.45829 75.373 75.137 75.595 0 68 23 4 0 0 0 0.019979 2 41845 41845;41946 63.563 25.412 1 12651000 25748 1249 17371 17708 30469;30470 30469 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1008.558837890625 1 1008.56119 1007.55391 -0.080475 -8.1164E-05 0.48599 0.00049015 0.40552 0.00040899 1008.5613748964416 75.382 0.40268 75.382 75.168 75.571 0 48 17 4 0 0 0 0.042911 1 41848 41848 48.346 8.3885 1 8221000 25749 1249 17371 17708 30471 30471 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7847595214844 2 504.784233 1007.55391 0.099526 5.0239E-05 0.80828 0.00040801 0.90781 0.00045825 504.7845820984053 75.815 0.70415 75.338 75.062 75.766 -0.47714 87 30 5 0 0 0 0.078417 2 41506 41404;41506 38.151 8.9685 1 47863000 25750 1249 17371 17708 30472;30473 30473 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.7840270996094 2 504.784233 1007.55391 0.31709 0.00016006 0.8622 0.00043523 1.1793 0.00059529 504.7844302673411 75.264 0.3668 75.31 75.147 75.513 0.045959 39 17 4 0 0 0 0.03327 1 41476 41476 53.576 9.1686 1 6246700 25751 1249 17371 17708 30474 30474 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7847900390625 2 504.784233 1007.55391 1.0011 0.00050532 0.73843 0.00037275 1.7395 0.00087807 504.7842167633035 83.486 0.87383 77.311 76.924 77.798 -6.1757 144 45 5 0 0 0 0.03327 4 54894 54773;54894;55022;55141 53.576 17.531 1 380950000 25752 1249 17371 17708 30475;30476;30477;30478 30476 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1008.56119 1007.55391 0.44079 0.00044456 -0.092942 -9.3738E-05 0.34785 0.00035083 1008.5610226766446 75.792 0.46938 75.315 75.104 75.574 -0.47714 0.057247 -0.00025027 NaN 48.346 66 20 4 NaN NaN NaN NaN 0 NaN NaN 0 38255000 25753 1249 17371 17708 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1008.56119 1007.55391 0.56392 0.00056875 0.52438 0.00052887 1.0883 0.0010976 1008.5617810461147 75.244 0.26891 75.29 75.183 75.452 0.045959 0.032512 0.00037234 NaN 48.346 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4172200 25754 1249 17371 17708 0.050438050089155695 IYSEVATLI 9 Unmodified _IYSEVATLI_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1008.56119 1007.55391 0.87833 0.00088585 -0.40223 -0.00040567 0.4761 0.00048018 1008.5608332707351 81.22 0.15349 75.044 74.98 75.133 -6.1757 -0.21405 -0.0005622 NaN 48.346 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 8467500 25755 1249 17371 17708 0.050438050089155695 IYSEVMEALKL 11 Unmodified _IYSEVMEALKL_ 0 0 0 ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1 ENST00000521046.1_1_8:52773369-52773723:-|nuORF ENST00000521046.1_1_8:52773369-52773723:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3524780273438 2 648.349414 1294.68428 1.5378 0.00099701 1.3487 0.0008744 2.8864 0.0018714 648.3507804384477 81.329 0.29276 81.389 81.214 81.507 0.059929 20 10 3 0 0 0 0.063019 1 44991 44991 48.073 18.991 1 3872200 25756 7745 17372 17709 30479 30479 0.0487203294558185 IYSEVMEALKL 11 Unmodified _IYSEVMEALKL_ 0 0 0 ENST00000521046.1_1_8:52773369-52773723:-|nuORF;ENSG00000168300|ENST00000522514|PCMTD1 ENST00000521046.1_1_8:52773369-52773723:-|nuORF ENST00000521046.1_1_8:52773369-52773723:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.35205078125 2 648.349414 1294.68428 1.2816 0.00083094 -0.66956 -0.00043411 0.61207 0.00039684 648.3493107896683 96.558 0.30392 90.382 90.237 90.541 -6.1757 50 17 4 0 0 0 1.4363E-11 2 63946 63946;64073 128.58 76.949 1 63490000 25757 7745 17372 17709 30480;30481 30480 0.0487203294558185 IYSFGMCALEM 11 Unmodified _IYSFGMCALEM_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.2763671875 2 632.77417 1263.53379 0.49634 0.00031407 -0.77669 -0.00049147 -0.28035 -0.0001774 632.7738263741305 81.02 0.30717 80.527 80.334 80.641 -0.49247 18 14 2 0 0 0 0.68427 1 44336 44336 5.7319 1.7875 1 3030900 25758 3097 17373 17710 30482 30482 -0.08743773309242897 IYSFGMCALEM 11 Unmodified _IYSFGMCALEM_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 632.77417 1263.53379 0.13163 8.3292E-05 -0.92978 -0.00058834 -0.79815 -0.00050505 632.7736556331932 80.296 0.22795 80.296 80.18 80.408 0 -0.23737 -0.00013484 NaN 5.7319 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 431070 25759 3097 17373 17710 -0.08743773309242897 IYSFGMCALEM 11 Unmodified _IYSFGMCALEM_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 632.77417 1263.53379 0.55188 0.00034922 -0.9084 -0.00057481 -0.35652 -0.0002256 633.2742809992573 80.719 0.16088 80.777 80.703 80.864 0.057587 0.24342 -0.00010779 NaN 5.7319 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1107000 25760 3097 17373 17710 -0.08743773309242897 IYSFHTLSF 9 Unmodified _IYSFHTLSF_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20221201_MKP_PDAC_01 4 557.7825927734375 2 557.782025 1113.5495 NaN NaN NaN NaN NaN NaN NaN 82.181 1 76.005 75.505 76.505 -6.1757 0 0 0 0.035065 1 53977 53977 64.236 11.968 1 25761 1295 17374 17711 30483 30483 -0.0027365941400603333 IYSFLGETF 9 Unmodified _IYSFLGETF_ 0 0 0 ENSG00000164850|ENST00000397088|GPER1 ENSG00000164850|ENST00000397088|GPER1 ENSG00000164850|ENST00000397088|GPER1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.8021240234375 2 538.768583 1075.52261 0.86873 0.00046805 -2.5778 -0.0013888 -1.7091 -0.00092079 538.767087450505 88.815 0.17466 82.64 82.494 82.669 -6.1757 12 9 2 0 0 0 0.13712 1 58547 58547 30.225 6.0149 1 10794000 25762 7252 17375 17712 30484 30484 -0.012127680251978745 IYSFMLCVE 9 Unmodified _IYSFMLCVE_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MSMS AL20221201_MKP_PDAC_01 4 368.8422241210938 3 368.841656 1103.50314 NaN NaN NaN NaN NaN NaN NaN 99.856 1 93.681 93.181 94.181 -6.1757 0 0 0 0.7453 1 66631 66631 4.897 0.36815 1 25763 3124 17376 17713 30485 30485 -0.04447183631941698 IYSHTPVSL 9 Unmodified _IYSHTPVSL_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000463112.1_1_1:32051343-32052577:+|nuORF;ENST00000481165.5_1_1:32051343-32051478:+|nuORF;ENST00000480586.1_1_1:32050752-32051478:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7743530273438 2 508.7742 1015.53385 -0.10849 -5.5197E-05 0.73187 0.00037236 0.62338 0.00031716 508.77414340854676 43.094 0.25219 42.783 42.656 42.908 -0.31039 30 11 4 0 0 0 0.0041763 1 22902 22902 120.45 53.107 1 19057000 25764 5451 17377 17714 30486 30486 0.02670054068948957 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3020629882812 2 581.300581 1160.58661 0.70843 0.00041181 1.8117 0.0010531 2.5201 0.0014649 581.3013079609245 74.803 0.27711 74.327 74.155 74.432 -0.47588 26 10 3 0 0 0 0.040683 1 40924 40924 49.554 11.403 1 2558400 25765 8554 17378 17715 30487 30487 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3013305664062 2 581.300581 1160.58661 0.76474 0.00044454 0.27047 0.00015722 1.0352 0.00060177 581.30063598366 74.22 0.44888 74.264 74.05 74.499 0.043983 80 19 5 0 0 0 0.0087873 2 40863 40863;40963 103.35 51.085 1 80625000 25766 8554 17378 17715 30488;30489 30488 0.012740121317847297 IYSIDFTRF 9 Unmodified _IYSIDFTRF_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3001708984375 2 581.300581 1160.58661 0.0907 5.2724E-05 -0.45841 -0.00026647 -0.36771 -0.00021375 581.3002418891848 85.129 1.0091 78.954 78.318 79.327 -6.1757 145 61 3 0 0 0 0.0087873 6 55740 55710;55740;55871;55999;56130;56266 103.35 35.273 1 76805000 25767 8554 17378 17715 30490;30491;30492;30493;30494;30495 30491 0.012740121317847297 IYSINLLLI 9 Unmodified _IYSINLLLI_ 0 0 0 ENSG00000111371|ENST00000398637|SLC38A1 ENSG00000111371|ENST00000398637|SLC38A1 ENSG00000111371|ENST00000398637|SLC38A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3338012695312 2 531.333893 1060.65323 0.62104 0.00032998 0.48609 0.00025828 1.1071 0.00058826 531.3339396738934 101.83 0.088669 95.651 95.592 95.68 -6.1757 13 6 3 0 0 0 0.0095811 1 68346 68346 81.613 3.4637 1 32203000 25768 2786 17379 17716 30496 30496 0.12533247693681915 IYSKPGGHNLF 11 Unmodified _IYSKPGGHNLF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5524597167969 3 411.552262 1231.63496 -0.24965 -0.00010274 0.48091 0.00019792 0.23126 9.5175E-05 411.55246726812373 35.467 0.22871 35.492 35.373 35.602 0.024967 40 10 5 0 0 0 0.33469 1 18738 18738 24.957 24.957 1 14514000 25769 6326 17380 17717 30497 30497 0.028405057716554438 IYSKPGGHNLF 11 Unmodified _IYSKPGGHNLF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.5529174804688 3 411.552262 1231.63496 1.0299 0.00042387 0.1908 7.8525E-05 1.2207 0.0005024 411.5523129100213 39.463 0.39741 35.012 34.796 35.194 -4.4509 57 23 3 0 0 0 0.067723 2 23353 23353;23498 47.053 33.534 1 33773000 25770 6326 17380 17717 30498;30499 30498 0.028405057716554438 IYSKPGGYCLF 11 Carbamidomethyl (C) _IYSKPGGYC(Carbamidomethyl (C))LF_ IYSKPGGYC(1)LF IYSKPGGYC(57)LF 0 1 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.8212890625 2 652.820824 1303.62709 1.3594 0.00088746 1.755 0.0011457 3.1144 0.0020332 652.8203238972745 64.043 0.53369 57.868 57.652 58.186 -6.1757 69 28 4 0 0 0 0.020698 1 41583 41583 57.249 15.294 1 25444000 25771 3289 17381 17718 30500 30500 335 -0.012573895401374102 IYSKPGGYRL 10 Unmodified _IYSKPGGYRL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENST00000495131.1_1_1:89521662-89521803:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2173767089844 3 385.216991 1152.62914 -0.13834 -5.3292E-05 0.81964 0.00031574 0.6813 0.00026245 385.2173939549355 30.38 0.24201 30.41 30.277 30.519 0.030106 28 10 3 0 0 0 0.42143 1 15861 15861 22.775 13.531 1 9858800 25772 3290 17382 17719 30501 30501 0.05893407259986816 IYSKPGGYRL 10 Unmodified _IYSKPGGYRL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF;ENST00000495131.1_1_1:89521662-89521803:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2171325683594 3 385.216991 1152.62914 1.6913 0.0006515 0.098919 3.8105E-05 1.7902 0.00068961 385.2170736715371 34.066 0.39771 30.08 29.858 30.256 -3.9853 70 21 4 0 0 0 0.38092 2 19543 19543;19669 19.626 13.747 1 34614000 25773 3290 17382 17719 30502;30503 30502 0.05893407259986816 IYSKTTRFAL 10 Unmodified _IYSKTTRFAL_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2;nc|ENSG00000049541|P35250-2|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.564453125 3 400.564279 1198.67101 0.069897 2.7998E-05 1.6177 0.00064799 1.6876 0.00067599 400.56510443778694 39.208 0.19532 39.22 39.063 39.259 0.011452 21 8 3 0 0 0 0.32533 1 20852 20852 25.997 2.1963 1 3083100 25774 711 17383 17720 30504 30504 0.0796196294852507 IYSLMPLLL 9 Unmodified _IYSLMPLLL_ 0 0 0 ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1 ENST00000481360.1_1_10:120454563-120467024:-|nuORF ENST00000481360.1_1_10:120454563-120467024:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8178100585938 2 531.817021 1061.61949 0.91808 0.00048825 0.49533 0.00026343 1.4134 0.00075168 531.8170747217977 102.24 0.11113 96.066 96.003 96.114 -6.1757 10 4 3 0 0 0 0.013472 1 68628 68628 70.716 22.37 1 19055000 25775 6154 17384 17721 30505 30505 0.09114502930265189 IYSLTVLIN 9 Unmodified _IYSLTVLIN_ 0 0 0 REV__ENSG00000148483|ENST00000377495|TMEM236 REV__ENSG00000148483|ENST00000377495|TMEM236 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7803955078125 2 518.307875 1034.6012 -0.72529 -0.00037592 1.1371 0.00058935 0.41179 0.00021343 518.3083631179944 78.134 0.26763 77.652 77.535 77.803 -0.4826 20 12 2 0 0 0 0.20528 1 42863 42863 8.5933 2.2392 1 1228100 + 25776 20955 17385 17722 30506 30506 0.08528084279919312 IYSNHEYKW 9 Unmodified _IYSNHEYKW_ 0 0 0 ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8651428222656 3 413.864617 1238.57202 0.1349 5.5829E-05 0.73161 0.00030279 0.86651 0.00035862 413.8648821588862 31.666 0.215 31.537 31.408 31.623 -0.12915 25 8 4 0 0 0 0.30202 1 16450 16450 16.566 5.7664 1 7979200 25777 12366 17386 17723 30507 30507 -0.037720600163765994 IYSNHEYKW 9 Unmodified _IYSNHEYKW_ 0 0 0 ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 413.8880310058594 3 413.864617 1238.57202 1.1653 0.00048228 -0.14627 -6.0537E-05 1.019 0.00042174 413.8646720574305 34.817 0.4169 30.722 30.518 30.935 -4.0951 60 24 3 0 0 0 0.19496 1 20112 20112 13.615 11.362 1 29154000 25778 12366 17386 17723 30508 30508 -0.037720600163765994 IYSNHEYKW 9 Unmodified _IYSNHEYKW_ 0 0 0 ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 413.864617 1238.57202 -0.36889 -0.00015267 0.27011 0.00011179 -0.09878 -4.0882E-05 413.8649275875763 31.722 0.13911 31.722 31.681 31.82 0 0.12031 -0.00051577 NaN 16.566 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 445770 25779 12366 17386 17723 -0.037720600163765994 IYSNHEYKW 9 Unmodified _IYSNHEYKW_ 0 0 0 ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF ENST00000371804.3_1_10:91152438-91162049:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.864617 1238.57202 -0.37652 -0.00015583 1.1507 0.00047624 0.7742 0.00032041 414.1992944472548 31.515 0.17063 31.545 31.457 31.627 0.030104 -0.056029 0.00057758 NaN 16.566 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2071000 25780 12366 17386 17723 -0.037720600163765994 IYSPDHSSNNF 11 Unmodified _IYSPDHSSNNF_ 0 0 0 ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000071564|P15923-3|TCF3 ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.7822265625 2 640.780741 1279.54693 -0.11357 -7.2773E-05 -0.036558 -2.3426E-05 -0.15013 -9.6199E-05 640.7807700632595 31.171 0.20426 31.171 31.051 31.255 0 18 9 3 0 0 0 0.073778 1 16230 16230 45.74 13.434 1 1404700 25781 1059 17387 17724 30509 30509 -0.08166159609618262 IYSPLLFKYF 10 Unmodified _IYSPLLFKYF_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8618774414062 2 645.860275 1289.706 2.2042 0.0014236 -0.10752 -6.9441E-05 2.0967 0.0013542 645.860195843732 94.699 0.27858 94.714 94.54 94.819 0.014252 28 10 3 0 0 0 0.10424 1 52602 52602 45.7 26.443 1 5377400 25782 16114;16115 17388 17725 30510 30510 0.07273205756473544 IYSPLLFKYF 10 Unmodified _IYSPLLFKYF_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3624267578125 2 645.860275 1289.706 0.28258 0.00018251 0.19028 0.00012289 0.47286 0.0003054 645.8601580634602 99.892 0.26304 93.716 93.541 93.804 -6.1757 32 19 3 0 0 0 0.077785 1 66679 66679 51.63 25.362 1 44906000 25783 16114;16115 17388 17725 30511 30511 0.07273205756473544 IYSQEIDILL 10 Unmodified _IYSQEIDILL_ 0 0 0 REV__nc|ENSG00000079805|P50570-3|DNM2 REV__nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.835205078125 2 603.834454 1205.65436 0.54712 0.00033037 0.29439 0.00017776 0.84152 0.00050814 603.8346487885289 87.154 0.85976 80.978 80.546 81.405 -6.1757 116 46 3 0 0 0 0.095098 1 57347 57347 47.749 3.8904 1 55148000 + 25784 17654 17389 17726 30512 30512 0.059754172719067356 IYSQLETLI 9 Unmodified _IYSQLETLI_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.30419921875 2 540.30279 1078.59103 0.53582 0.0002895 0.46855 0.00025316 1.0044 0.00054266 540.3031647883477 81.864 0.44432 81.369 81.113 81.557 -0.4952 36 16 3 0 0 0 0.32871 1 44791 44791 15.847 0 1 1759400 25785 5622 17390 17727 30513 30513 0.054874765546856 IYSQSRRLI 9 Unmodified _IYSQSRRLI_ 0 0 0 REV__ENSG00000169499|ENST00000617275|PLEKHA2 REV__ENSG00000169499|ENST00000617275|PLEKHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3344116210938 2 568.332747 1134.65094 1.5008 0.00085294 -0.38244 -0.00021735 1.1183 0.00063559 568.3330997456536 96.563 0.25217 90.387 90.289 90.541 -6.1757 35 14 3 0 0 0 0.14602 1 63991 63991 28.487 7.6156 1 61665000 + 25786 22404 17391 17728 30514 30514 0.08900212008575181 IYSQTYFRF 9 Unmodified _IYSQTYFRF_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.806640625 2 612.806031 1223.59751 1.1189 0.00068565 0.95686 0.00058637 2.0757 0.001272 612.8066684054756 63.76 0.34846 63.749 63.552 63.9 -0.010532 59 16 5 0 0 0 0.0019086 2 34831 34831;34935 149.99 87.422 1 61342000 25787 3602 17392 17729 30515;30516 30515 -0.005345854939832861 IYSQTYFRF 9 Unmodified _IYSQTYFRF_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8056030273438 2 612.806031 1223.59751 0.89985 0.00055143 0.074739 4.58E-05 0.97459 0.00059723 612.8059784106262 70.473 1.0152 64.297 63.811 64.826 -6.1757 100 55 2 0 0 0 0.0019086 5 45990 45860;45990;46117;46244;46386 152.41 89.84 1 62763000 25788 3602 17392 17729 30517;30518;30519;30520;30521 30518 -0.005345854939832861 IYSRIDRLEAF 11 Unmodified _IYSRIDRLEAF_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.5857238769531 3 461.585743 1381.7354 0.05471 2.5254E-05 0.58279 0.00026901 0.6375 0.00029426 461.5859706132028 51.078 0.22174 50.664 50.576 50.798 -0.41351 17 10 2 0 0 0 0.58245 1 27544 27544 12.228 5.6041 1 2510000 25789 9463 17393 17730 30522 30522 0.05980118034631232 IYSRIDRLEAF 11 Unmodified _IYSRIDRLEAF_ 0 0 0 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 ENSG00000186222|ENST00000320776|BLOC1S4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2456665039062 3 461.585743 1381.7354 0.76789 0.00035445 -1.028 -0.00047453 -0.26016 -0.00012009 461.58544122923723 50.755 0.17612 50.702 50.608 50.784 -0.053871 17 8 3 0 0 0 0.29799 1 27458 27458 6.6235 0 1 1763000 25790 9463 17393 17730 30523 30523 0.05980118034631232 IYSSKPLHI 9 Unmodified _IYSSKPLHI_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.2067565917969 3 353.206203 1056.59678 -0.28679 -0.0001013 1.6127 0.00056962 1.3259 0.00046833 353.20655125227944 33.715 0.33041 33.555 33.369 33.7 -0.15918 27 13 3 0 0 0 0.23158 1 17590 17590 19.362 12.732 1 1698600 25791 3966 17394 17731 30524 30524 0.0707461985698501 IYSSKPLHI 9 Unmodified _IYSSKPLHI_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2067565917969 3 353.206203 1056.59678 1.9255 0.0006801 1.3031 0.00046028 3.2286 0.0011404 353.2071957290121 37.479 0.3505 33.195 32.955 33.306 -4.2835 45 20 3 0 0 0 0.15471 2 21931 21931;22037 26.021 15.221 1 13733000 25792 3966 17394 17731 30525;30526 30525 0.0707461985698501 IYSSKPLHI 9 Unmodified _IYSSKPLHI_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 353.206203 1056.59678 -0.075195 -2.6559E-05 0.1307 4.6165E-05 0.055508 1.9606E-05 353.2060774587373 33.412 0.16573 33.441 33.317 33.483 0.028934 0.043767 -0.0011933 NaN 26.021 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 902840 25793 3966 17394 17731 0.0707461985698501 IYSSKTLEL 9 Unmodified _IYSSKTLEL_ 0 0 0 nc|ENSG00000115806|Q9H8Y8-2|GORASP2;GORASP2|p.E382Sfs*33|1|0.04|ENSG00000115806|chr2:170965914-170965914|A/-|frameshift_variant;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF nc|ENSG00000115806|Q9H8Y8-2|GORASP2 nc|ENSG00000115806|Q9H8Y8-2|GORASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2952880859375 2 527.294965 1052.57538 0.62132 0.00032762 1.4212 0.00074938 2.0425 0.001077 527.2957913133733 46.673 0.28109 46.673 46.481 46.762 0 31 12 3 0 0 0 0.085319 1 25477 25477 36.506 0 1 6820100 25794 3162 17395 17732 30527 30527 0.05119190037635235 IYSSKTLEL 9 Unmodified _IYSSKTLEL_ 0 0 0 nc|ENSG00000115806|Q9H8Y8-2|GORASP2;GORASP2|p.E382Sfs*33|1|0.04|ENSG00000115806|chr2:170965914-170965914|A/-|frameshift_variant;ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF nc|ENSG00000115806|Q9H8Y8-2|GORASP2 nc|ENSG00000115806|Q9H8Y8-2|GORASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.294677734375 2 527.294965 1052.57538 0.54391 0.0002868 -2.1871 -0.0011533 -1.6432 -0.00086646 527.2937118712143 46.858 0.18007 46.522 46.424 46.604 -0.33664 18 8 3 0 0 0 0.05483 1 25085 25085 43.772 0 1 6295900 25795 3162 17395 17732 30528 30528 0.05119190037635235 IYSSNHKLVF 10 Unmodified _IYSSNHKLVF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2201232910156 3 403.220513 1206.63971 NaN NaN NaN NaN NaN NaN NaN 39.08 1 39.091 38.591 39.591 0.011452 0 0 0 0.8634 1 20806 20806 9.544 4.647 1 25796 7694 17396 17733 30529 30529 0.04465389914412299 IYSSPHLSL 9 Unmodified _IYSSPHLSL_ 0 0 0 REV__ENST00000477883.1_1_1:47051569-47051692:-|nuORF REV__ENST00000477883.1_1_1:47051569-47051692:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7715759277344 2 508.7742 1015.53385 1.2241 0.00062279 1.3365 0.00067998 2.5606 0.0013028 508.77241360412927 100.07 0.19514 93.889 93.819 94.014 -6.1757 18 11 2 0 0 0 0.14602 1 66851 66851 28.487 0 1 33927000 + 25797 27618 17397 17734 30530 30530 0.026700540689716945 IYSSVQLLT 9 Unmodified _IYSSVQLLT_ 0 0 0 REV__ENSG00000134538|ENST00000256958|SLCO1B1 REV__ENSG00000134538|ENST00000256958|SLCO1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.290283203125 2 512.289682 1022.56481 0.66052 0.00033838 0.082074 4.2046E-05 0.74259 0.00038042 512.2895909899277 60.504 0.30037 60.504 60.345 60.646 0 29 13 3 0 0 0 0.45045 1 33821 33821 10.074 2.7847 1 2227500 + 25798 19991 17398 17735 30531 30531 0.05443207383189019 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2 ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.76025390625 2 563.758215 1125.50188 0.87339 0.00049238 0.30859 0.00017397 1.182 0.00066636 563.7581656090612 81.792 0.54257 81.297 81.015 81.557 -0.4952 58 20 4 0 0 0 0.094149 2 44750 44750;44844 46.921 16.696 1 7204100 25799 10689;12171 17399 17736 30532;30533 30532 -0.05585358404869112 IYSTAFDYF 9 Unmodified _IYSTAFDYF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2 ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.75927734375 2 563.758215 1125.50188 1.5536 0.00087583 0.59223 0.00033388 2.1458 0.0012097 563.7585034089884 81.216 0.36237 81.275 81.09 81.452 0.059929 33 13 3 0 0 0 0.094149 2 44876 44876;44975 46.921 16.696 1 8517100 25800 10689;12171 17399 17736 30534;30535 30534 -0.05585358404869112 IYSTDLHKL 9 Unmodified _IYSTDLHKL_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8687744140625 3 363.86948 1088.58661 -0.45925 -0.00016711 0.044171 1.6073E-05 -0.41508 -0.00015104 363.86928763102645 35.142 0.137 35.142 35.072 35.209 0 13 6 3 0 0 0 0.32235 1 18589 18589 20.581 13.951 1 2405400 25801 4078 17400 17737 30536 30536 0.0458601213174461 IYSTDLHKL 9 Unmodified _IYSTDLHKL_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8693237304688 3 363.86948 1088.58661 -0.38398 -0.00013972 0.42471 0.00015454 0.040729 1.482E-05 363.86960745247575 35.309 0.21366 35.086 34.938 35.151 -0.2224 25 9 3 0 0 0 0.21643 1 18458 18458 26.021 15.221 1 4231000 25802 4078 17400 17737 30537 30537 0.0458601213174461 IYSTDLHKL 9 Unmodified _IYSTDLHKL_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.870361328125 3 363.86948 1088.58661 1.5089 0.00054904 -0.092869 -3.3792E-05 1.416 0.00051525 363.86946736830595 39.457 0.41049 35.006 34.796 35.207 -4.4509 54 24 3 0 0 0 0.094149 2 23499 23356;23499 38.615 18.2 1 31557000 25803 4078 17400 17737 30538;30539 30539 0.0458601213174461 IYSTDLHKL 9 Unmodified _IYSTDLHKL_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.86948 1088.58661 -0.059872 -2.1786E-05 0.15425 5.6127E-05 0.094379 3.4341E-05 364.2045958668609 35.037 0.1039 35.064 35.018 35.122 0.027401 -0.010355 -1.0091E-05 NaN 38.615 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 405450 25804 4078 17400 17737 0.0458601213174461 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.556640625 3 397.557125 1189.64954 0.18762 7.4591E-05 -0.22708 -9.0278E-05 -0.039459 -1.5687E-05 397.5569746377042 43.562 0.3602 43.547 43.377 43.737 -0.015667 49 16 4 0 0 0 0.011291 2 23302 23302;23406 76.825 53.024 1 288870000 25805 5973 17401 17738 30540;30541 30540 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8310546875 2 595.832049 1189.64954 0.19971 0.000119 -0.65084 -0.00038779 -0.45113 -0.0002688 595.8315776892537 43.581 0.25612 43.565 43.421 43.677 -0.015667 26 11 3 0 0 0 0.0082981 1 23334 23334 107.19 51.01 1 38529000 25806 5973 17401 17738 30542 30542 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5576171875 3 397.557125 1189.64954 1.1307 0.00044953 -0.13014 -5.1737E-05 1.0006 0.00039779 397.55708904682245 48.381 0.6645 43.147 42.756 43.421 -5.2339 161 39 5 0 0 0 0.067618 3 30130 30001;30130;30262 40.725 34.222 1 887610000 25807 5973 17401 17738 30543;30544;30545 30544 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8314819335938 2 595.832049 1189.64954 0.57501 0.00034261 -0.28076 -0.00016729 0.29425 0.00017532 595.8319862304178 48.404 0.57558 43.17 42.808 43.384 -5.2339 121 34 5 0 0 0 0.0073703 3 30275 30014;30143;30275 125.53 81.757 1 247130000 25808 5973 17401 17738 30546;30547;30548 30548 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.557373046875 3 397.557125 1189.64954 1.2698 0.00050482 -2.3261 -0.00092475 -1.0563 -0.00041992 397.5560019137593 50.34 0.3631 44.801 44.581 44.944 -5.5391 32 23 2 0 0 0 0.171 1 31476 31476 26.021 15.221 1 10895000 25809 5973 17401 17738 30549 30549 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5575561523438 3 397.557125 1189.64954 0.59958 0.00023837 0.27764 0.00011038 0.87723 0.00034875 397.55723097382577 56.256 0.44242 50.279 50.139 50.581 -5.9769 54 25 3 0 0 0 0.067618 2 35975 35840;35975 40.725 30.41 1 56997000 25810 5973 17401 17738 30550;30551 30551 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MSMS AL20221201_MKP_PDAC_01 4 397.557373046875 3 397.557125 1189.64954 NaN NaN NaN NaN NaN NaN NaN 52.577 1 46.843 46.343 47.343 -5.7345 0 0 0 0.011453 1 33190 33190 90.135 61.64 1 25811 5973 17401 17738 30552 30552 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MSMS AL20221201_MKP_PDAC_01 4 397.5577087402344 3 397.557125 1189.64954 NaN NaN NaN NaN NaN NaN NaN 52.877 1 47.072 46.572 47.572 -5.8042 0 0 0 0.055406 1 33386 33386 55.235 34.654 1 25812 5973 17401 17738 30553 30553 0.06230577919791358 IYSTKLYRF 9 Unmodified _IYSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MSMS AL20221201_MKP_PDAC_01 4 397.5579833984375 3 397.557125 1189.64954 NaN NaN NaN NaN NaN NaN NaN 53.069 1 47.265 46.765 47.765 -5.8042 0 0 0 0.025508 1 33510 33510 71.708 42.271 1 25813 5973 17401 17738 30554 30554 0.06230577919791358 IYSTKYTGF 9 Unmodified _IYSTKYTGF_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|369|3|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|369|3|anti-sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|369|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.5283813476562 2 540.274032 1078.53351 0.477 0.00025771 -3.0802 -0.0016642 -2.6032 -0.0014064 540.2722375058968 53.147 0.30518 53.147 52.958 53.263 0 26 13 3 0 0 0 0.16418 1 29377 29377 19.257 4.4187 1 3796100 25814 15910 17402 17739 30555 30555 -0.0026136565090837394 IYSTLVTCVTF 11 Carbamidomethyl (C) _IYSTLVTC(Carbamidomethyl (C))VTF_ IYSTLVTC(1)VTF IYSTLVTC(110)VTF 0 1 0 nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.334228515625 2 652.333764 1302.65297 0.89591 0.00058443 0.15451 0.00010079 1.0504 0.00068522 652.3340655659765 91.516 0.67201 85.34 84.994 85.666 -6.1757 113 37 4 0 0 0 1.3103E-08 3 60583 60330;60459;60583 107.19 78.105 1 49035000 25815 7123 17403 17740 30556;30557;30558 30558 696 0.013754599114918165 IYSTLVTCVTF 11 Carbamidomethyl (C) _IYSTLVTC(Carbamidomethyl (C))VTF_ IYSTLVTC(1)VTF IYSTLVTC(44)VTF 0 1 0 nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 MSMS AL20221201_MKP_PDAC_01 4 652.3329467773438 2 652.333764 1302.65297 NaN NaN NaN NaN NaN NaN NaN 91.826 1 85.651 85.151 86.151 -6.1757 0 0 0 0.14221 1 60710 60710 43.858 21.122 1 25816 7123 17403 17740 30559 30559 696 0.013754599114918165 IYSTPLPEKF 10 Unmodified _IYSTPLPEKF_ 0 0 0 nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3 nc|ENSG00000109787|P57682-2|KLF3 nc|ENSG00000109787|P57682-2|KLF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.823486328125 2 597.823889 1193.63323 -0.80722 -0.00048258 0.44186 0.00026415 -0.36536 -0.00021842 597.823765489319 55.588 0.14939 55.588 55.461 55.611 0 11 6 2 0 0 0 0.32493 1 30880 30880 26.021 11.182 1 1704200 25817 2674 17404 17741 30560 30560 0.044154519630410505 IYSTPLPEKF 10 Unmodified _IYSTPLPEKF_ 0 0 0 nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3 nc|ENSG00000109787|P57682-2|KLF3 nc|ENSG00000109787|P57682-2|KLF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.822998046875 2 597.823889 1193.63323 -0.7126 -0.00042601 -0.1987 -0.00011879 -0.91131 -0.0005448 597.8236686195974 56.193 0.35157 55.707 55.531 55.882 -0.48554 53 17 4 0 0 0 0.0086576 2 30448 30448;30556 90.135 50.185 1 61971000 25818 2674 17404 17741 30561;30562 30561 0.044154519630410505 IYSTPLPEKF 10 Unmodified _IYSTPLPEKF_ 0 0 0 nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3 nc|ENSG00000109787|P57682-2|KLF3 nc|ENSG00000109787|P57682-2|KLF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8242797851562 2 597.823889 1193.63323 -0.48611 -0.00029061 -1.7825 -0.0010656 -2.2686 -0.0013562 598.324161524684 55.848 0.23972 55.78 55.626 55.866 -0.068741 24 12 3 0 0 0 0.024351 1 30332 30332 71.708 35.581 1 10372000 25819 2674 17404 17741 30563 30563 0.044154519630410505 IYSTPLPEKF 10 Unmodified _IYSTPLPEKF_ 0 0 0 nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3 nc|ENSG00000109787|P57682-2|KLF3 nc|ENSG00000109787|P57682-2|KLF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8240966796875 2 597.823889 1193.63323 0.077403 4.6273E-05 0.48701 0.00029115 0.56441 0.00033742 597.8239710124162 61.905 0.57368 55.729 55.499 56.073 -6.1757 89 31 4 0 0 0 0.047829 2 39818 39818;39949 59.368 29.383 1 186790000 25820 2674 17404 17741 30564;30565 30564 0.044154519630410505 IYSTTLWHL 9 Unmodified _IYSTTLWHL_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3031005859375 2 567.303124 1132.5917 0.63682 0.00036127 -1.2263 -0.00069571 -0.58953 -0.00033444 567.3028202742753 71.935 0.42648 71.974 71.685 72.111 0.039024 62 14 6 0 0 0 0.023164 1 39657 39657 60.39 29.753 1 13860000 25821 290 17405 17742 30566 30566 0.030703159943641367 IYSTTLWHL 9 Unmodified _IYSTTLWHL_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27 ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.3273315429688 2 567.303124 1132.5917 1.16 0.00065806 -1.3682 -0.00077616 -0.20817 -0.0001181 567.3023825512638 83.629 0.33356 77.453 77.253 77.587 -6.1757 28 17 2 0 0 0 0.17666 1 54895 54895 19.439 4.8573 1 6837900 25822 290 17405 17742 30567 30567 0.030703159943641367 IYSVFRNAASF 11 Unmodified _IYSVFRNAASF_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8298950195312 2 637.830037 1273.64552 0.29591 0.00018874 -0.24198 -0.00015434 0.053929 3.4398E-05 637.8298985519865 62.21 0.28693 62.178 62.024 62.311 -0.032791 36 14 3 0 0 0 0.00064514 1 33941 33941 87.123 47.166 1 31443000 25823 5887 17406 17743 30568 30568 0.0196448842607424 IYSVNKEQL 9 Unmodified _IYSVNKEQL_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2976684570312 2 547.298039 1092.58152 -0.34693 -0.00018988 3.5323 0.0019332 3.1853 0.0017433 547.2979456443613 34.855 0.22464 34.855 34.733 34.958 0 32 11 4 0 0 0 0.017075 1 18368 18368 66.457 16.524 1 21330000 25824 2001 17407 17744 30569 30569 0.0389370826915183 IYSVNKEQL 9 Unmodified _IYSVNKEQL_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2969360351562 2 547.298039 1092.58152 0.6172 0.00033779 -0.14239 -7.793E-05 0.47481 0.00025987 547.298158703037 39.619 0.26724 35.168 35.014 35.281 -4.4509 42 16 3 0 0 0 0.013609 2 23447 23447;23574 70.332 24.311 1 51487000 25825 2001 17407 17744 30570;30571 30570 0.0389370826915183 IYSWILDHF 9 Unmodified _IYSWILDHF_ 0 0 0 ENSG00000170802|ENST00000340553|FOXN2;nc|ENSG00000170802|P32314-2|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 MSMS AL20221201_MKP_PDAC_01 4 597.3028564453125 2 597.303124 1192.5917 NaN NaN NaN NaN NaN NaN NaN 99.189 1 93.013 92.513 93.513 -6.1757 0 0 0 0.068038 1 65979 65979 67.344 25.249 1 25826 8025 17408 17745 30572 30572 0.0031031599437483237 IYSYGFATI 9 Unmodified _IYSYGFATI_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.763671875 2 517.7633 1033.51205 0.64463 0.00033376 0.45353 0.00023482 1.0982 0.00056859 517.7636305058018 74.643 0.32864 74.167 73.997 74.326 -0.47588 24 13 2 0 0 0 0.37804 1 40840 40840 13.508 0.97634 1 1343500 25827 1546 17409 17746 30573 30573 -0.0033675067961667082 IYSYGFATI 9 Unmodified _IYSYGFATI_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7642822265625 2 517.7633 1033.51205 0.36135 0.0001871 0.59022 0.00030559 0.95157 0.00049269 517.7636687375656 74.085 0.2919 74.129 74.05 74.342 0.043976 21 12 3 0 0 0 0.48152 1 40842 40842 8.5933 0.68312 1 1207600 25828 1546 17409 17746 30574 30574 -0.0033675067961667082 IYTDIIYIF 9 Unmodified _IYTDIIYIF_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8171997070312 2 580.815533 1159.61651 0.90133 0.0005235 2.8499 0.0016553 3.7513 0.0021788 580.8171699481549 100.8 0.16205 100.75 100.65 100.82 -0.04216 11 5 3 0 0 0 0.013472 1 56008 56008 70.716 23.795 1 8251700 25829 4760 17410 17747 30575 30575 0.04308951077064194 IYTDMGRFTI 10 Oxidation (M) _IYTDM(Oxidation (M))GRFTI_ IYTDM(1)GRFTI IYTDM(50)GRFTI 0 0 1 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.80322265625 2 616.802631 1231.59071 1.0093 0.00062257 -0.41063 -0.00025328 0.59871 0.00036929 616.8024911655234 52.448 0.35842 52.389 52.229 52.588 -0.058914 48 17 4 0 0 0 0.087164 1 28466 28466 49.527 21.898 1 11686000 25830 2318 17411 17748 30576 30576 399 -0.015822664368215555 IYTDMGRFTI 10 Oxidation (M) _IYTDM(Oxidation (M))GRFTI_ IYTDM(1)GRFTI IYTDM(55)GRFTI 0 0 1 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3048095703125 2 616.802631 1231.59071 0.7049 0.00043479 1.4862 0.00091669 2.1911 0.0013515 616.8038586360123 58.328 0.37202 52.253 52.015 52.387 -6.0745 45 19 3 0 0 0 0.061704 1 37280 37280 55.235 13.279 1 73238000 25831 2318 17411 17748 30577 30577 399 -0.015822664368215555 IYTDMGRFTI 10 Unmodified _IYTDMGRFTI_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8052368164062 2 608.805174 1215.59579 0.76495 0.0004657 -0.26941 -0.00016402 0.49554 0.00030169 608.8049923876446 64.792 0.28021 64.792 64.636 64.916 1.5259E-05 24 13 2 0 0 0 0.098202 1 35479 35479 61.09 32.008 1 5266600 25832 2318 17411 17749 30578 30578 -0.003379625741899872 IYTDMGRFTI 10 Unmodified _IYTDMGRFTI_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF;nc|ENSG00000125814|Q9H115-2|NAPB;ENSG00000125814|ENST00000377026|NAPB ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.80517578125 2 608.805174 1215.59579 0.84799 0.00051626 0.16362 9.9613E-05 1.0116 0.00061588 608.805248143467 72.013 0.71963 65.837 65.481 66.201 -6.1757 76 38 3 0 0 0 0.075273 1 47166 47166 59.052 7.4226 1 51260000 25833 2318 17411 17749 30579 30579 -0.003379625741899872 IYTDTLQAL 9 Unmodified _IYTDTLQAL_ 0 0 0 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2789306640625 2 519.279315 1036.54408 0.89901 0.00046683 -3.1607 -0.0016413 -2.2617 -0.0011745 519.279214089525 70.048 0.71847 63.872 63.544 64.262 -6.1757 109 40 4 0 0 0 0.18465 1 45993 45993 24.674 6.5389 1 546980000 25834 10139 17412 17750 30580 30580 0.027266170035318282 IYTEAIVEM 9 Oxidation (M) _IYTEAIVEM(Oxidation (M))_ IYTEAIVEM(1) IYTEAIVEM(82) 0 0 1 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7650756835938 2 542.765183 1083.51581 0.80947 0.00043935 -0.8615 -0.00046759 -0.052024 -2.8237E-05 542.7649283873632 46.299 0.45584 46.299 46.088 46.544 0 66 21 4 0 0 0 0.0095811 2 25363 25254;25363 81.613 30.758 1 17949000 25835 2308 17413 17751 30581;30582 30582 398 -0.022604489680816187 IYTEAIVEM 9 Oxidation (M) _IYTEAIVEM(Oxidation (M))_ IYTEAIVEM(1) IYTEAIVEM(82) 0 0 1 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.766357421875 2 542.765183 1083.51581 1.1191 0.00060739 -0.77752 -0.00042201 0.34154 0.00018538 542.7650099632532 54.038 0.47153 48.173 47.947 48.419 -5.8653 49 27 2 0 0 0 0.0095811 2 34187 34187;34320 81.613 24.142 1 16032000 25836 2308 17413 17751 30583;30584 30583 398 -0.022604489680816187 IYTEAIVEM 9 Unmodified _IYTEAIVEM_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MSMS AL20221201_MKP_PDAC_01 4 534.7693481445312 2 534.767726 1067.5209 NaN NaN NaN NaN NaN NaN NaN 72.472 1 66.296 65.796 66.796 -6.1757 0 0 0 0.026323 1 47415 47415 70.716 6.4792 1 25837 2308 17413 17752 30585 30585 -0.010161451054727877 IYTEHAHQV 9 Unmodified _IYTEHAHQV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5179748535156 3 366.517329 1096.53016 1.2626 0.00046278 0.93411 0.00034237 2.1968 0.00080515 366.51747784757515 18.143 0.34925 15.522 15.341 15.69 -2.6215 74 26 4 0 0 0 0.08691 1 9527 9527 27.223 19.614 1 15005000 25838 1052 17414 17753 30586 30586 -0.01424615704900134 IYTEVRELV 9 Unmodified _IYTEVRELV_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3161010742188 2 561.313689 1120.61282 0.54738 0.00030725 0.91714 0.0005148 1.4645 0.00082205 561.3140694598834 52.862 0.23557 52.41 52.299 52.535 -0.45173 33 11 4 0 0 0 0.13231 1 28567 28567 29.841 4.4413 1 9992700 25839 4777 17415 17754 30587 30587 0.05734281303239186 IYTFGVPGYF 10 Unmodified _IYTFGVPGYF_ 0 0 0 REV__ENSG00000112462|ENST00000396806|OR12D3 REV__ENSG00000112462|ENST00000396806|OR12D3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2901000976562 2 582.292225 1162.5699 NaN NaN NaN NaN NaN NaN NaN 48.025 1 47.672 47.172 48.172 -0.3526 0 0 0 0.21264 1 25760 25760 42.095 9.3089 1 + 25840 18819 17416 17755 30588 30588 -0.004884887541948046 IYTFNQLF 8 Unmodified _IYTFNQLF_ 0 0 0 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 ENSG00000162722|ENST00000366481|TRIM58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2703857421875 2 523.271293 1044.52803 0.30875 0.00016156 -1.9814 -0.0010368 -1.6726 -0.00087522 523.2703403491604 78.974 0.27014 79.029 78.888 79.158 0.054977 16 10 2 0 0 0 0.6895 1 43651 43651 18.135 2.2878 1 1495000 25841 6899 17417 17756 30589 30589 0.007549555572722966 IYTFPHASF 9 Unmodified _IYTFPHASF_ 0 0 0 ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 ENSG00000111801|ENST00000244519|BTN3A3 ENSG00000111801|ENST00000244519|BTN3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7697143554688 2 541.768917 1081.52328 0.30535 0.00016543 0.052723 2.8564E-05 0.35807 0.00019399 541.7688531693266 60.149 0.3821 60.096 59.918 60.3 -0.053062 72 20 5 0 0 0 0.019303 1 32741 32741 64.236 6.765 1 157080000 25842 2829 17418 17757 30590 30590 -0.014219285855006092 IYTFPHSAF 9 Unmodified _IYTFPHSAF_ 0 0 0 ENST00000377662.6_1_6:26431111-26431840:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P ENST00000377662.6_1_6:26431111-26431840:+|nuORF ENST00000377662.6_1_6:26431111-26431840:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.769287109375 2 541.768917 1081.52328 0.30535 0.00016543 0.052723 2.8564E-05 0.35807 0.00019399 541.7688531693266 60.149 0.3821 60.096 59.918 60.3 -0.053062 72 20 5 0 0 0 0.016184 1 32845 32845 67.344 3.1075 1 157080000 25843 12525 17419 17758 30591 30591 -0.014219285855006092 IYTGEKPCKHE 11 Unmodified _IYTGEKPCKHE_ 0 0 0 nc|ENSG00000146757|Q03936-2|ZNF92;ENSG00000146757|ENST00000328747|ZNF92;nc|ENSG00000146757|Q03936-3|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5496215820312 3 435.5483 1303.62307 1.0897 0.00047463 -0.89986 -0.00039193 0.18987 8.2699E-05 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.66428 1 10952 10952 6.2344 0 1 1375000000 25844 5793 17420 17759 30592 30592 -0.016594790338558596 IYTGQDAEQV 10 Unmodified _IYTGQDAEQV_ 0 0 0 REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF REV__ENST00000531536.1_1_11:118076554-118083145:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.1811828613281 3 375.180383 1122.51932 NaN NaN NaN NaN NaN NaN NaN 75.676 1 69.5 69 70 -6.1757 0 0 0 0.94014 1 49499 49499 3.3196 0 1 + 25845 21552 17421 17760 30593 30593 -0.03704062869860536 IYTHGLALL 9 Unmodified _IYTHGLALL_ 0 0 0 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7950439453125 2 500.794935 999.575317 0.63423 0.00031762 -1.4906 -0.0007465 -0.8564 -0.00042888 500.7948152895613 64.82 0.4585 64.82 64.539 64.997 1.5259E-05 68 22 4 0 0 0 0.0090851 3 35559 35418;35457;35559 85.357 34.502 1 30313000 25846 6834 17422 17761 30594;30595;30596 30596 0.07551234828270026 IYTHGLALL 9 Unmodified _IYTHGLALL_ 0 0 0 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7960815429688 2 500.794935 999.575317 0.83001 0.00041567 0.13847 6.9347E-05 0.96849 0.00048501 500.7950736558184 69.681 0.5188 63.506 63.261 63.78 -6.1757 49 27 2 0 0 0 0.0090851 2 45546 45425;45546 85.357 18.013 1 48314000 25847 6834 17422 17761 30597;30598 30598 0.07551234828270026 IYTHGNHSL 9 Unmodified _IYTHGNHSL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14 ENSG00000173193|ENST00000474629|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20221201_MKP_PDAC_01 4 521.2597045898438 2 521.259248 1040.50394 NaN NaN NaN NaN NaN NaN NaN 19.239 1 16.583 16.083 17.083 -2.6564 0 0 0 0.16996 1 10175 10175 34.402 8.0604 1 25848 8296 17423 17762 30599 30599 -0.014688848763853457 IYTHLVKSL 9 Unmodified _IYTHLVKSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5501708984375 3 358.54997 1072.62808 0.10939 3.9222E-05 -0.018469 -6.6222E-06 0.090921 3.26E-05 358.5499762543425 38.826 0.22299 38.837 38.718 38.941 0.011452 26 10 3 0 0 0 0.098164 1 20670 20670 25.997 14.48 1 6806300 25849 4869 17424 17763 30600 30600 0.09467192891088416 IYTHLVKSL 9 Unmodified _IYTHLVKSL_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.551025390625 3 358.54997 1072.62808 1.2896 0.00046237 0.39937 0.00014319 1.6889 0.00060556 358.55005211759203 43.833 0.40168 39.068 38.857 39.259 -4.7648 53 25 3 0 0 0 0.098164 2 26612 26612;26752 31.636 15.07 1 19815000 25850 4869 17424 17763 30601;30602 30601 0.09467192891088416 IYTIDGSRK 9 Unmodified _IYTIDGSRK_ 0 0 0 nc|ENSG00000077279|O43602-2|DCX;nc|ENSG00000077279|O43602|DCX;ENSG00000077279|ENST00000636035|DCX;nc|ENSG00000170390|Q8N568-2|DCLK2;ENSG00000170390|ENST00000296550|DCLK2;nc|ENSG00000170390|Q8N568-3|DCLK2 nc|ENSG00000077279|O43602-2|DCX nc|ENSG00000077279|O43602-2|DCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7911376953125 2 526.790381 1051.56621 0.11868 6.2517E-05 -0.47158 -0.00024842 -0.3529 -0.00018591 526.7903859201339 34.227 0.44437 34.255 34.055 34.5 0.027401 79 20 5 0 0 0 0.011968 1 17991 17991 74.929 8.4723 1 97953000 25851 16053 17425 17764 30603 30603 0.04248841471940068 IYTIINSI 8 Unmodified _IYTIINSI_ 0 0 0 ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7746276855469 2 468.773668 935.532783 -0.73125 -0.00034279 1.5836 0.00074234 0.85232 0.00039955 468.77439576206456 77.562 0.23704 77.079 77.032 77.269 -0.4826 15 10 2 0 0 0 0.65867 1 42524 42524 20.871 5.103 1 980990 25852 4527 17426 17765 30604 30604 0.06243839700039189 IYTIINSI 8 Unmodified _IYTIINSI_ 0 0 0 ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5399169921875 1 936.54006 935.532783 0.21169 0.00019826 0.078384 7.341E-05 0.29007 0.00027166 936.5400338126057 84.559 0.80684 78.383 78.05 78.857 -6.1757 141 46 5 0 0 0 0.079485 1 55971 55971 108 10.922 1 195430000 25853 4527 17426 17765 30605 30605 0.06243839700039189 IYTKGTPEI 9 Unmodified _IYTKGTPEI_ 0 0 0 ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3 ENSG00000156011|ENST00000327040|PSD3 ENSG00000156011|ENST00000327040|PSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2811584472656 2 511.281857 1020.54916 -0.33496 -0.00017126 0.44604 0.00022805 0.11108 5.6795E-05 511.2820254029758 34.885 0.26437 34.885 34.733 34.998 0 30 13 3 0 0 0 0.013609 1 18390 18390 70.332 18.064 1 7247700 25854 6423 17427 17766 30606 30606 0.039709208661292905 IYTKGTPEI 9 Unmodified _IYTKGTPEI_ 0 0 0 ENSG00000156011|ENST00000327040|PSD3;nc|ENSG00000156011|Q9NYI0|PSD3 ENSG00000156011|ENST00000327040|PSD3 ENSG00000156011|ENST00000327040|PSD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2835083007812 2 511.281857 1020.54916 0.59626 0.00030486 2.2505 0.0011506 2.8467 0.0014555 511.2829272013877 39.584 0.30345 35.134 34.946 35.25 -4.4509 31 18 2 0 0 0 0.017075 1 23471 23471 66.457 14.188 1 18758000 25855 6423 17427 17766 30607 30607 0.039709208661292905 IYTKIMDLI 9 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ IYTKIM(1)DLI IYTKIM(65)DLI 0 0 1 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.319580078125 2 563.314843 1124.61513 0.55101 0.00031039 1.2391 0.00069799 1.7901 0.0010084 563.315438811755 63.668 0.30248 63.182 63.016 63.318 -0.48617 25 13 2 0 0 0 0.018061 2 34679 34679;34785 65.474 17.128 1 28015000 25856 8370 17428 17767 30608;30609 30608 1424 0.057809937166666714 IYTKIMDLI 9 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ IYTKIM(1)DLI IYTKIM(100)DLI 0 0 1 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3152465820312 2 563.314843 1124.61513 0.8171 0.00046029 -0.010677 -6.0144E-06 0.80643 0.00045427 563.3149113659712 64.425 0.42864 63.939 63.696 64.125 -0.48512 67 19 5 0 0 0 0.0087923 2 35095 35095;35198 103.42 45.948 1 20650000 25857 8370 17428 17767 30610;30611 30610 1424 0.057809937166666714 IYTKIMDLI 9 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ IYTKIM(1)DLI IYTKIM(120)DLI 0 0 1 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3162231445312 2 563.314843 1124.61513 0.82714 0.00046594 0.17745 9.9962E-05 1.0046 0.0005659 563.315156686553 63.266 0.49118 63.245 63.049 63.541 -0.021614 65 24 4 0 0 0 0.0048194 1 34555 34555 117.76 60.289 1 33562000 25858 8370 17428 17767 30612 30612 1424 0.057809937166666714 IYTKIMDLI 9 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ IYTKIM(1)DLI IYTKIM(74)DLI 0 0 1 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3161010742188 2 563.314843 1124.61513 1.4001 0.00078871 0.1726 9.7227E-05 1.5727 0.00088593 563.3151078403621 63.963 0.45222 63.952 63.741 64.194 -0.010532 63 21 4 0 0 0 0.012228 1 34946 34946 74.2 25.854 1 39667000 25859 8370 17428 17767 30613 30613 1424 0.057809937166666714 IYTKIMDLI 9 Oxidation (M) _IYTKIM(Oxidation (M))DLI_ IYTKIM(1)DLI IYTKIM(65)DLI 0 0 1 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MSMS AL20221201_MKP_PDAC_01 4 563.3152465820312 2 563.314843 1124.61513 NaN NaN NaN NaN NaN NaN NaN 76.147 1 69.971 69.471 70.471 -6.1757 0 0 0 0.032269 1 49811 49811 65.474 17.128 1 25860 8370 17428 17767 30614 30614 1424 0.057809937166666714 IYTKIMDLI 9 Unmodified _IYTKIMDLI_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3187866210938 2 555.317386 1108.62022 0.20557 0.00011415 1.1109 0.00061691 1.3165 0.00073106 555.3181118670699 78.677 0.31125 78.191 78.012 78.323 -0.48596 28 11 3 0 0 0 0.044296 1 43080 43080 47.594 13.492 1 1531000 25861 8370 17428 17768 30615 30615 0.0702529757929824 IYTKIMDLI 9 Unmodified _IYTKIMDLI_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.31884765625 2 555.317386 1108.62022 0.46341 0.00025734 -0.034268 -1.903E-05 0.42915 0.00023831 555.3174374484286 78.115 0.38419 78.168 77.964 78.348 0.052452 46 15 4 0 0 0 0.018061 2 43079 43079;43189 65.474 13.391 1 24403000 25862 8370 17428 17768 30616;30617 30616 0.0702529757929824 IYTKIMDLI 9 Unmodified _IYTKIMDLI_ 0 0 0 nc|ENSG00000173852|Q2PZI1|DPY19L1;ENSG00000173852|ENST00000638088|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 nc|ENSG00000173852|Q2PZI1|DPY19L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3182373046875 2 555.317386 1108.62022 1.2638 0.00070181 0.43476 0.00024143 1.6986 0.00094324 555.3176133638303 96.905 0.42268 90.729 90.523 90.946 -6.1757 78 24 5 0 0 0 0.012228 1 64245 64245 74.2 21.931 1 677780000 25863 8370 17428 17768 30618 30618 0.0702529757929824 IYTLNLNEL 9 Unmodified _IYTLNLNEL_ 0 0 0 nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF nc|ENSG00000011566|Q8IVH8-3|MAP4K3;ENSG00000012983|ENST00000682126|MAP4K5 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7999267578125 2 546.800414 1091.58628 0.39177 0.00021422 -0.10283 -5.6229E-05 0.28894 0.00015799 546.8001987574936 83.073 0.36197 82.575 82.402 82.764 -0.49751 35 14 3 0 0 0 0.038285 1 45477 45477 50.855 0.92203 1 4209700 25864 453;467 17429 17769 30619 30619 0.04414592411899321 IYTNLNQKI 9 Unmodified _IYTNLNQKI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8140258789062 2 553.813856 1105.61316 0.4853 0.00026877 0.60664 0.00033597 1.0919 0.00060473 553.8138590307865 40.134 0.25007 39.836 39.713 39.963 -0.29716 25 11 3 0 0 0 0.013609 1 21204 21204 70.332 26.56 1 6417000 25865 5578 17430 17770 30620 30620 0.06457701023077789 IYTNLNQKI 9 Unmodified _IYTNLNQKI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8143310546875 2 553.813856 1105.61316 0.44461 0.00024623 0.43988 0.00024361 0.88448 0.00048984 553.8140298641787 39.782 0.20567 39.787 39.668 39.873 0.0050545 14 9 2 0 0 0 0.05447 1 21190 21190 43.858 13.222 1 1829600 25866 5578 17430 17770 30621 30621 0.06457701023077789 IYTNLNQKI 9 Unmodified _IYTNLNQKI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8139038085938 2 553.813856 1105.61316 0.48057 0.00026615 0.52956 0.00029328 1.0101 0.00055942 553.8139361988236 45.13 0.3322 40.278 40.069 40.401 -4.852 54 21 3 0 0 0 0.00023314 2 27724 27581;27724 149.91 74.985 1 38827000 25867 5578 17430 17770 30622;30623 30623 0.06457701023077789 IYTPCIMTVIL 11 Unmodified _IYTPCIMTVIL_ 0 0 0 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8457641601562 2 633.845453 1265.67635 1.216 0.00077073 -0.54804 -0.00034738 0.66792 0.00042336 633.8452625392432 46.901 0.18408 46.868 46.753 46.938 -0.033417 15 8 2 0 0 0 0.15484 1 25257 25257 36.127 3.3413 1 4250700 25868 5733 17431 17771 30624 30624 0.0541418242448799 IYTPIFNEY 9 Unmodified _IYTPIFNEY_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2871704101562 2 580.28714 1158.55973 0.40944 0.00023759 1.0759 0.00062432 1.4853 0.00086191 580.2879945955758 74.832 0.48493 74.832 74.626 75.111 0 42 24 3 0 0 0 0.48152 1 41575 41575 8.5933 0.68312 1 2183200 25869 2084 17432 17772 30625 30625 -0.013210964794325264 IYTPIFNEY 9 Unmodified _IYTPIFNEY_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.28662109375 2 580.28714 1158.55973 0.74788 0.00043399 2.3012 0.0013354 3.0491 0.0017693 580.2884309392356 75.342 0.54324 74.865 74.605 75.148 -0.47714 82 28 4 0 0 0 0.013323 2 41180 41180;41276 71.134 49.387 1 18362000 25870 2084 17432 17772 30626;30627 30626 -0.013210964794325264 IYTPIFNEY 9 Unmodified _IYTPIFNEY_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2868041992188 2 580.28714 1158.55973 0.69057 0.00040073 -0.79731 -0.00046267 -0.10674 -6.1939E-05 580.2861286124494 82.795 0.50758 76.62 76.355 76.863 -6.1757 94 28 4 0 0 0 0.047196 2 54436 54299;54436 46.021 26.764 1 128530000 25871 2084 17432 17772 30628;30629 30629 -0.013210964794325264 IYTPIFNEY 9 Unmodified _IYTPIFNEY_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 580.28714 1158.55973 0.66854 0.00038794 3.6229 0.0021023 4.2915 0.0024903 580.2889151274208 74.828 0.50069 74.874 74.547 75.048 0.045959 0.017014 0.0019575 NaN 71.134 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 6223800 25872 2084 17432 17772 -0.013210964794325264 IYTQQDVWV 9 Unmodified _IYTQQDVWV_ 0 0 0 REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2882690429688 2 576.290214 1150.56587 0.39625 0.00022835 -1.1354 -0.00065433 -0.73917 -0.00042598 576.2893687209898 76.726 0.4031 70.55 70.316 70.719 -6.1757 43 20 3 0 0 0 0.20428 1 50272 50272 22.736 2.2827 1 22589000 + 25873 19596 17433 17773 30630 30630 -0.00338578247942678 IYTRILSRF 9 Unmodified _IYTRILSRF_ 0 0 0 ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF ENSG00000198690|ENST00000362065|FAN1 ENSG00000198690|ENST00000362065|FAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2335815429688 3 390.232752 1167.67643 1.2394 0.00048364 -0.85716 -0.00033449 0.3822 0.00014915 390.5664442805356 50.055 0.26162 50.007 49.886 50.148 -0.048824 18 12 2 0 0 0 0.21589 1 27063 27063 21.59 10.095 1 2558200 25874 10124 17434 17774 30631 30631 0.09929686530995241 IYTRLLPAL 9 Unmodified _IYTRLLPAL_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3314819335938 2 530.331685 1058.64882 0.61608 0.00032673 -0.47373 -0.00025123 0.14235 7.5493E-05 530.3313116731532 73.335 0.39014 72.859 72.651 73.042 -0.47588 39 17 3 0 0 0 0.017075 2 40100 40100;40206 66.457 33.012 1 4280400 25875 10721 17435 17775 30632;30633 30632 0.12183783270734239 IYTRLLPAL 9 Unmodified _IYTRLLPAL_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3314819335938 2 530.331685 1058.64882 0.098177 5.2067E-05 0.49919 0.00026473 0.59736 0.0003168 530.3315107641911 72.759 0.54137 72.801 72.527 73.068 0.041733 95 25 5 0 0 0 0.036857 3 40090 39988;40090;40205 51.63 27.84 1 142230000 25876 10721 17435 17775 30634;30635;30636 30635 0.12183783270734239 IYTRLLPAL 9 Unmodified _IYTRLLPAL_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.3319702148438 2 530.331685 1058.64882 0.93818 0.00049755 -0.26909 -0.0001427 0.6691 0.00035484 530.331506004243 92.263 1.059 86.087 85.612 86.671 -6.1757 182 63 4 0 0 0 0.008513 4 61085 60835;60957;61085;61213 99.755 57.8 1 268890000 25877 10721 17435 17775 30637;30638;30639;30640 30639 0.12183783270734239 IYTSNHIWTL 10 Unmodified _IYTSNHIWTL_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.3255004882812 2 624.324588 1246.63462 1.1363 0.00070945 0.43606 0.00027224 1.5724 0.00098169 624.3251289162885 63.843 0.26096 63.832 63.695 63.956 -0.010532 28 12 3 0 0 0 0.05292 1 34942 34942 74.2 47.932 1 4613500 25878 1673 17436 17776 30641 30641 0.021170860517941037 IYTSSVNRL 9 Unmodified _IYTSSVNRL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7897338867188 2 526.790381 1051.56621 -0.27456 -0.00014463 -0.11657 -6.141E-05 -0.39113 -0.00020604 526.7903132050311 34.317 0.34063 34.317 34.156 34.496 0 56 17 5 0 0 0 0.017075 1 18023 18023 66.457 10.28 1 142810000 25879 9257 17437 17777 30642 30642 0.04248841471940068 IYTSSVNRL 9 Unmodified _IYTSSVNRL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7899780273438 2 526.790381 1051.56621 -0.35165 -0.00018524 -0.53077 -0.00027961 -0.88242 -0.00046485 526.790126357285 34.472 0.43697 34.281 34.104 34.541 -0.19131 80 19 5 0 0 0 0.012668 2 17974 17974;18081 72.968 16.791 1 542440000 25880 9257 17437 17777 30643;30644 30643 0.04248841471940068 IYTSSVNRL 9 Unmodified _IYTSSVNRL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.79052734375 2 526.790381 1051.56621 0.11868 6.2517E-05 -0.47158 -0.00024842 -0.3529 -0.00018591 526.7903859201339 34.227 0.44437 34.255 34.055 34.5 0.027401 79 20 5 0 0 0 0.025842 1 18099 18099 57.722 1.5449 1 97953000 25881 9257 17437 17777 30645 30645 0.04248841471940068 IYTSSVNRL 9 Unmodified _IYTSSVNRL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7915649414062 2 526.790381 1051.56621 0.65571 0.00034542 -1.2152 -0.00064018 -0.55953 -0.00029476 526.7895382973628 38.887 0.79907 34.436 34.115 34.914 -4.4509 195 50 6 0 0 0 0.0090524 4 22818 22818;22948;23071;23211 85.642 18.708 1 2965699999.9999995 25882 9257 17437 17777 30646;30647;30648;30649 30646 0.04248841471940068 IYTSTPWE 8 Unmodified _IYTSTPWE_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7614440917969 2 498.737283 995.460012 0.46737 0.00023309 -1.3568 -0.00067669 -0.88943 -0.00044359 498.7370614453875 52.859 0.14733 52.859 52.773 52.92 0 10 6 2 0 0 0 8.7369 1 29265 29265 19.439 0 1 862090 25883 8680 17438 17778 30650 30650 -0.0378991409338596 IYTSTPWE 8 Unmodified _IYTSTPWE_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7612915039062 2 498.737283 995.460012 0.31537 0.00015728 -0.74577 -0.00037194 -0.4304 -0.00021466 498.7367405122455 53.467 0.26791 53.015 52.841 53.109 -0.45173 29 12 3 0 0 0 8.7369 1 28873 28873 19.439 0 1 2480000 25884 8680 17438 17778 30651 30651 -0.0378991409338596 IYTVHHIVW 9 Unmodified _IYTVHHIVW_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8820495605469 3 389.881831 1166.62366 0.17283 6.7384E-05 -0.37807 -0.0001474 -0.20524 -8.0019E-05 389.88189473409113 49.002 0.30877 48.958 48.847 49.155 -0.04369 34 14 3 0 0 0 0.30202 1 26478 26478 17.113 10.011 1 2861400 25885 996 17439 17779 30652 30652 0.04701728468148758 IYTVKVEDLTF 11 Unmodified _IYTVKVEDLTF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.3598022460938 2 664.360836 1326.70712 0.72608 0.00048238 -0.26493 -0.00017601 0.46114 0.00030637 664.3602569481111 74.33 0.33047 73.854 73.667 73.997 -0.47588 42 13 4 0 0 0 0.0086238 2 40732 40633;40732 69.338 45.318 1 9522900 25886 3948 17440 17780 30653;30654 30654 0.056833753347063976 IYTVKVEDLTF 11 Unmodified _IYTVKVEDLTF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3589477539062 2 664.360836 1326.70712 0.61409 0.00040798 -2.4529 -0.0016296 -1.8388 -0.0012216 664.3583336517828 73.85 0.29274 73.894 73.692 73.985 0.043983 33 13 3 0 0 0 5.2027E-06 1 40650 40650 94.909 72.172 1 18056000 25887 3948 17440 17780 30655 30655 0.056833753347063976 IYTVKVEDLTF 11 Unmodified _IYTVKVEDLTF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.3629150390625 2 664.360836 1326.70712 0.72968 0.00048477 0.56689 0.00037662 1.2966 0.00086139 664.3615884542539 87.068 0.72903 80.892 80.567 81.296 -6.1757 106 39 3 0 0 0 2.4991E-15 4 57385 57266;57385;57516;57648 139.38 93.638 1 48272000 25888 3948 17440 17780 30656;30657;30658;30659 30657 0.056833753347063976 IYTVLFERL 9 Unmodified _IYTVLFERL_ 0 0 0 nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF nc|ENSG00000108528|Q02978-2|SLC25A11 nc|ENSG00000108528|Q02978-2|SLC25A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.333740234375 2 577.334424 1152.6543 0.64077 0.00036994 0.4197 0.00024231 1.0605 0.00061225 577.3345942351068 78.927 0.34915 78.982 78.809 79.158 0.054977 38 13 4 0 0 0 0.0082548 2 43570 43570;43685 96.367 20.606 1 10849000 25889 2579 17441 17781 30660;30661 30660 0.08407462062541526 IYTVLFERL 9 Unmodified _IYTVLFERL_ 0 0 0 nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4841038-4842521:-|nuORF nc|ENSG00000108528|Q02978-2|SLC25A11 nc|ENSG00000108528|Q02978-2|SLC25A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3349609375 2 577.334424 1152.6543 1.426 0.00082327 0.4384 0.0002531 1.8644 0.0010764 577.33481326669 95.744 0.34663 89.568 89.383 89.73 -6.1757 48 21 3 0 0 0 0.037253 1 63374 63374 51.415 16.483 1 26411000 25890 2579 17441 17781 30662 30662 0.08407462062541526 IYTVQTVQI 9 Unmodified _IYTVQTVQI_ 0 0 0 ENST00000481525.5_1_3:71733875-71759595:-|nuORF;ENSG00000163412|ENST00000425534|EIF4E3 ENST00000481525.5_1_3:71733875-71759595:-|nuORF ENST00000481525.5_1_3:71733875-71759595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.803955078125 2 532.802957 1063.59136 0.57051 0.00030397 -1.2454 -0.00066357 -0.67492 -0.0003596 532.8019783256705 62.577 0.32738 62.09 61.915 62.243 -0.48764 24 15 2 0 0 0 0.087258 1 34064 34064 36.044 10.645 1 5815300 25891 6991 17442 17782 30663 30663 0.062108962745242025 IYTVQTVQI 9 Unmodified _IYTVQTVQI_ 0 0 0 ENST00000481525.5_1_3:71733875-71759595:-|nuORF;ENSG00000163412|ENST00000425534|EIF4E3 ENST00000481525.5_1_3:71733875-71759595:-|nuORF ENST00000481525.5_1_3:71733875-71759595:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.8086547851562 2 532.802957 1063.59136 NaN NaN NaN NaN NaN NaN NaN 56.288 1 50.311 49.811 50.811 -5.9769 0 0 0 0.068038 1 35905 35905 51.63 5.8899 1 25892 6991 17442 17782 30664 30664 0.062108962745242025 IYTYTGSIL 9 Unmodified _IYTYTGSIL_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7753295898438 2 515.776408 1029.53826 NaN NaN NaN NaN NaN NaN NaN 75.731 1 75.254 74.754 75.754 -0.47714 0 0 0 0.15618 1 41457 41457 36.044 3.7387 1 25893 7937;4935 17443 17783 30665 30665 0.024675184918578452 IYTYTGSIL 9 Unmodified _IYTYTGSIL_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B MSMS AL20221201_MKP_PDAC_01 4 515.7758178710938 2 515.776408 1029.53826 NaN NaN NaN NaN NaN NaN NaN 83.493 1 77.318 76.818 77.818 -6.1757 0 0 0 0.15618 1 54908 54908 36.044 5.8194 1 25894 7937;4935 17443 17783 30666 30666 0.024675184918578452 IYVDKVKHV 9 Unmodified _IYVDKVKHV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5537719726562 3 367.553603 1099.63898 -0.42236 -0.00015524 -0.23711 -8.715E-05 -0.65946 -0.00024239 367.5535915277041 20.687 0.14449 20.687 20.625 20.77 0 15 9 2 0 0 0 0.56345 1 10416 10416 2.086 1.1237 1 659070 25895 3480 17444 17784 30667 30667 0.09314595265368553 IYVDKVKHV 9 Unmodified _IYVDKVKHV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5538635253906 3 367.553603 1099.63898 0.78173 0.00028733 0.49741 0.00018282 1.2791 0.00047015 367.55365564962136 23.437 0.36591 20.658 20.492 20.858 -2.7784 61 21 4 0 0 0 0.15471 2 12740 12637;12740 22.658 10.483 1 18354000 25896 3480 17444 17784 30668;30669 30669 0.09314595265368553 IYVGDGYVVHL 11 Unmodified _IYVGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.8265991210938 2 617.826963 1233.63937 0.64326 0.00039742 -0.029991 -1.8529E-05 0.61327 0.0003789 617.8266688288012 68.233 0.30637 67.752 67.616 67.923 -0.48071 36 13 4 0 0 0 0.088077 1 37274 37274 43.858 29.952 1 4634400 25897 8599;4509 17445 17785 30670 30670 0.03189970194580383 IYVGDGYVVHL 11 Unmodified _IYVGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 617.826963 1233.63937 0.55473 0.00034273 -1.2883 -0.00079596 -0.7336 -0.00045324 617.8264705938379 67.691 0.2665 67.709 67.647 67.914 0.018028 -0.021646 -0.0014495 NaN 43.858 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1730500 25898 8599;4509 17445 17785 0.03189970194580383 IYVGRVKSF 9 Unmodified _IYVGRVKSF_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8782348632812 3 356.878198 1067.61277 -0.15935 -5.6867E-05 0.93905 0.00033513 0.77971 0.00027826 356.87836505462474 35.457 0.37236 35.482 35.351 35.723 0.024967 51 17 4 0 0 0 0.060956 1 18737 18737 42.312 19.576 1 18211000 25899 1309 17446 17786 30671 30671 0.08166326093896714 IYVGRVKSF 9 Unmodified _IYVGRVKSF_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8138427734375 2 534.813659 1067.61277 -0.051364 -2.747E-05 0.66648 0.00035644 0.61511 0.00032897 534.8137814431299 35.479 0.18623 35.504 35.394 35.581 0.024967 14 8 2 0 0 0 0.012228 1 18745 18745 71.922 27.515 1 2825400 25900 1309 17446 17786 30672 30672 0.08166326093896714 IYVGRVKSF 9 Unmodified _IYVGRVKSF_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8135986328125 2 534.813659 1067.61277 0.53745 0.00028743 -0.25925 -0.00013865 0.2782 0.00014878 534.8138406238136 39.645 0.32735 35.194 35.042 35.37 -4.4509 45 20 3 0 0 0 0.0084276 1 23543 23543 110.67 43.331 1 18309000 25901 1309 17446 17786 30673 30673 0.08166326093896714 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8058471679688 2 560.8055 1119.59645 0.58253 0.00032669 0.13028 7.3059E-05 0.71281 0.00039975 560.8055111322808 79.031 0.42699 78.545 78.349 78.776 -0.48596 60 18 4 0 0 0 0.07087 1 43337 43337 44.407 30.501 1 17897000 25902 7544 17447 17787 30674 30674 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3078002929688 2 560.8055 1119.59645 0.78108 0.00043803 -0.31738 -0.00017799 0.46371 0.00026005 560.8052194422664 78.438 0.58273 78.491 78.249 78.832 0.052452 89 23 5 0 0 0 0.10247 3 43240 43240;43349;43451 44.407 23.953 1 211740000 25903 7544 17447 17787 30675;30676;30677 30675 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8064575195312 2 560.8055 1119.59645 1.5115 0.00084766 -0.47548 -0.00026665 1.036 0.000581 560.8050676474182 96.473 0.45704 90.298 90.084 90.541 -6.1757 107 26 5 0 0 0 0.032796 2 63864 63864;63989 70.716 15.942 1 1781499999.9999998 25904 7544 17447 17787 30678;30679 30678 0.04143200137127678 IYVHDLLTF 9 Unmodified _IYVHDLLTF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1120.607177734375 1 1120.60372 1119.59645 1.1764 0.0013183 -1.2947 -0.0014508 -0.11826 -0.00013253 1120.6029104626655 96.474 0.28733 90.299 90.15 90.437 -6.1757 23 16 2 0 0 0 0.0082475 1 63879 63879 117.6 46.465 1 19045000 25905 7544 17447 17787 30680 30680 0.04143200137127678 IYVIDFFWN 9 Unmodified _IYVIDFFWN_ 0 0 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8050537109375 2 608.8055 1215.59645 0.84799 0.00051626 -0.3718 -0.00022635 0.4762 0.00028991 608.805248143467 72.013 0.71963 65.837 65.481 66.201 -6.1757 76 38 3 0 0 0 0.042911 1 47347 47347 48.346 6.5062 1 51260000 25906 8266 17448 17788 30681 30681 -0.002727998628415662 IYVISAETF 9 Unmodified _IYVISAETF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7760620117188 2 521.776408 1041.53826 0.817 0.00042629 -1.052 -0.00054891 -0.23499 -0.00012261 521.7757245768798 73.342 0.34353 73.342 73.126 73.469 0 32 18 2 0 0 0 0.25297 2 40759 40759;40863 19.439 8.3245 1 2851300 25907 3219 17449 17789 30682;30683 30682 0.019155184918417945 IYVISAETF 9 Unmodified _IYVISAETF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7765502929688 2 521.776408 1041.53826 1.2589 0.00065686 -0.65192 -0.00034015 0.60698 0.00031671 521.7763663945018 81.469 0.57083 75.294 74.961 75.532 -6.1757 79 32 3 0 0 0 0.16776 2 53384 53384;53506 26.341 6.9023 1 79811000 25908 3219 17449 17789 30684;30685 30684 0.019155184918417945 IYVKKRDF 8 Unmodified _IYVKKRDF_ 0 0 0 REV__ENST00000527505.1_1_11:27076962-27137060:+|nuORF REV__ENST00000527505.1_1_11:27076962-27137060:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2130126953125 3 356.878198 1067.61277 1.2675 0.00045233 -0.53516 -0.00019099 0.73231 0.00026135 356.8781655525868 39.656 0.42208 35.205 34.98 35.402 -4.4509 86 26 4 0 0 0 0.56356 1 23505 23505 29.082 0.58707 1 89165000 + 25909 19651 17450 17790 30686 30686 0.08166326093896714 IYVLPMLTI 9 Unmodified _IYVLPMLTI_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MSMS AL20221201_MKP_PDAC_01 4 531.8168334960938 2 531.817021 1061.61949 NaN NaN NaN NaN NaN NaN NaN 101.97 1 95.798 95.298 96.298 -6.1757 0 0 0 0.045101 1 68448 68448 59.795 33.454 1 25910 4530 17451 17791 30687 30687 0.09114502930242452 IYVMLLLL 8 Oxidation (M) _IYVM(Oxidation (M))LLLL_ IYVM(1)LLLL IYVM(42)LLLL 0 0 1 ENSG00000170412|ENST00000392627|GPRC5C;nc|ENSG00000170412|Q9NQ84-2|GPRC5C ENSG00000170412|ENST00000392627|GPRC5C ENSG00000170412|ENST00000392627|GPRC5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.302734375 2 497.30629 992.598026 0.60059 0.00029868 -2.3961 -0.0011916 -1.7955 -0.00089293 497.3033210356909 52.87 0.27582 52.807 52.664 52.94 -0.063423 20 13 2 0 0 0 0.42709 1 28643 28643 41.817 9.3636 1 2026800 25911 7981 17452 17792 30688 30688 1357 0.10143117901566256 IYVNPANTHQF 11 Unmodified _IYVNPANTHQF_ 0 0 0 ENSG00000132716|ENST00000368074|DCAF8 ENSG00000132716|ENST00000368074|DCAF8 ENSG00000132716|ENST00000368074|DCAF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3258666992188 2 652.325119 1302.63569 0.73006 0.00047624 0.53753 0.00035064 1.2676 0.00082688 652.3257184542995 48.735 0.32011 43.339 43.203 43.523 -5.3961 32 18 2 0 0 0 0.00063278 1 30330 30330 87.258 47.309 1 41990000 25912 4443 17453 17793 30689 30689 -0.003526995793208698 IYVPDIRNVF 10 Unmodified _IYVPDIRNVF_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.3422241210938 2 618.342781 1234.67101 0.95443 0.00059016 -0.25255 -0.00015616 0.70188 0.000434 618.3425890633479 80.879 0.43232 80.937 80.703 81.135 0.057587 50 16 4 0 0 0 0.22922 2 44659 44659;44762 43.772 7.6454 1 25967000 25913 5202 17454 17794 30690;30691 30690 0.06305962948499655 IYVPDIRNVF 10 Unmodified _IYVPDIRNVF_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3435668945312 2 618.342781 1234.67101 0.93486 0.00057806 -0.15559 -9.6211E-05 0.77927 0.00048185 618.3426872075181 94.612 0.45618 88.436 88.204 88.66 -6.1757 82 26 4 0 0 0 0.093652 3 62557 62557;62680;62817 63.961 20.102 1 107930000 25914 5202 17454 17794 30692;30693;30694 30692 0.06305962948499655 IYVPSSYHL 9 Unmodified _IYVPSSYHL_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7811889648438 2 539.782025 1077.5495 0.10185 5.4976E-05 -0.17622 -9.5121E-05 -0.074373 -4.0145E-05 539.7824265643776 55.056 0.55534 54.578 54.328 54.883 -0.47798 41 26 2 0 0 0 0.0094915 1 29815 29815 81.864 43.713 1 14951000 25915 3477 17455 17795 30695 30695 0.013823405859966442 IYVPSSYHL 9 Unmodified _IYVPSSYHL_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7821044921875 2 539.782025 1077.5495 1.0056 0.00054281 1.1911 0.00064294 2.1967 0.0011857 539.7828705689286 60.777 0.57461 54.629 54.462 55.036 -6.1478 67 30 3 0 0 0 0.0081063 2 39090 39090;39216 93.883 53.934 1 78146000 25916 3477 17455 17795 30696;30697 30696 0.013823405859966442 IYVPVSLGF 9 Unmodified _IYVPVSLGF_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7841796875 2 497.784036 993.553519 2.0633 0.0010271 -1.0042 -0.00049989 1.0591 0.00052718 497.78368118036417 94.294 0.46249 94.308 94.029 94.492 0.014244 45 16 4 0 0 0 0.027803 2 52352 52352;52457 56.541 26.316 1 13611000 25917 8259 17456 17796 30698;30699 30698 0.05648430079725131 IYVPVSLGF 9 Unmodified _IYVPVSLGF_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 994.5639038085938 1 994.560795 993.553519 2.2939 0.0022814 0.8831 0.00087829 3.177 0.0031597 994.5613258922476 94.264 0.43427 94.279 94.029 94.464 0.014244 36 15 3 0 0 0 0.0094915 1 52438 52438 81.864 45.398 1 9440000 25918 8259 17456 17796 30700 30700 0.05648430079725131 IYVPVSLGF 9 Unmodified _IYVPVSLGF_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.5621948242188 1 994.560795 993.553519 1.2228 0.0012162 -0.31756 -0.00031584 0.90525 0.00090033 994.5604844432328 100.12 0.31785 93.946 93.804 94.122 -6.1757 46 19 4 0 0 0 0.0094915 1 66831 66831 81.864 28.288 1 231110000 25919 8259 17456 17796 30701 30701 0.05648430079725131 IYVPVSLGF 9 Unmodified _IYVPVSLGF_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7846069335938 2 497.784036 993.553519 1.4321 0.00071287 0.076842 3.8251E-05 1.5089 0.00075112 497.78395459035943 100.12 0.28429 93.946 93.819 94.103 -6.1757 50 17 4 0 0 0 0.040472 1 66832 66832 49.669 15.482 1 347210000 25920 8259 17456 17796 30702 30702 0.05648430079725131 IYVQEMAKL 9 Oxidation (M) _IYVQEM(Oxidation (M))AKL_ IYVQEM(1)AKL IYVQEM(63)AKL 0 0 1 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2 nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7973022460938 2 555.796817 1109.57908 0.80969 0.00045002 0.24167 0.00013432 1.0514 0.00058434 555.796981053924 38.66 0.38173 38.66 38.476 38.858 0 57 17 5 0 0 0 0.020973 1 20600 20600 62.573 18.714 1 51642000 25921 2987 17457 17797 30703 30703 516 0.028675365398157737 IYVQEMAKL 9 Oxidation (M) _IYVQEM(Oxidation (M))AKL_ IYVQEM(1)AKL IYVQEM(63)AKL 0 0 1 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2 nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.79736328125 2 555.796817 1109.57908 0.19809 0.0001101 -0.6312 -0.00035082 -0.43311 -0.00024072 555.7967213483486 38.942 0.28929 38.655 38.498 38.787 -0.28687 37 12 4 0 0 0 0.020973 1 20492 20492 62.573 18.714 1 15121000 25922 2987 17457 17797 30704 30704 516 0.028675365398157737 IYVQEMAKL 9 Oxidation (M) _IYVQEM(Oxidation (M))AKL_ IYVQEM(1)AKL IYVQEM(46)AKL 0 0 1 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2 nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.7958984375 2 555.796817 1109.57908 0.32908 0.0001829 -0.94286 -0.00052404 -0.61379 -0.00034114 555.7960174624919 38.539 0.16835 38.556 38.434 38.603 0.01704 12 7 2 0 0 0 0.047788 1 20480 20480 45.7 12.914 1 3529200 25923 2987 17457 17797 30705 30705 516 0.028675365398157737 IYVQEMAKL 9 Unmodified _IYVQEMAKL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;ENSG00000099284|ENST00000373255|MACROH2A2 nc|ENSG00000113648|O75367|MACROH2A1 nc|ENSG00000113648|O75367|MACROH2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7999877929688 2 547.79936 1093.58417 1.0445 0.00057218 -0.60949 -0.00033388 0.43501 0.0002383 547.7990672856264 60.676 0.50359 54.528 54.274 54.778 -6.1478 61 26 3 0 0 0 0.013041 2 39001 39001;39123 71.922 23.576 1 217500000 25924 2987 17457 17798 30706;30707 30706 0.04111840402447342 IYVRGGNAMFL 11 Unmodified _IYVRGGNAMFL_ 0 0 0 REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF REV__ENST00000530023.5_2_11:31484759-31531097:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2230834960938 3 414.221748 1239.64341 0.47805 0.00019802 0.99608 0.0004126 1.4741 0.00061062 414.22254637801086 46.126 0.3028 46.098 45.926 46.229 -0.028011 23 13 2 0 0 0 0.71618 1 24788 24788 1.1098 0.096179 1 5066600 + 25925 28432 17458 17799 30708 30708 0.033177364166476764 IYVRIHTY 8 Unmodified _IYVRIHTY_ 0 0 0 ENST00000407010.6_2_7:16128723-16129239:-|nuORF ENST00000407010.6_2_7:16128723-16129239:-|nuORF ENST00000407010.6_2_7:16128723-16129239:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.299072265625 2 532.798009 1063.58147 -0.18477 -9.8446E-05 -4.3807 -0.002334 -4.5655 -0.0024325 533.298158185013 55.617 0.16945 55.548 55.497 55.666 -0.068737 11 8 2 0 0 0 0.31612 1 30242 30242 53.576 2.7205 1 4529400 25926 12939 17459 17800 30709 30709 0.05221753059799994 IYVTGGHLF 9 Unmodified _IYVTGGHLF_ 0 0 0 ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7719116210938 2 503.77146 1005.52837 0.83154 0.00041891 0.80391 0.00040499 1.6355 0.0008239 503.7716564205547 57.551 0.23682 57.485 57.397 57.634 -0.066036 20 11 2 0 0 0 0.019979 1 31326 31326 63.563 29.46 1 4077900 25927 4216 17460 17801 30710 30710 0.02582375277143001 IYVTQLAEKF 10 Unmodified _IYVTQLAEKF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3385009765625 2 606.337164 1210.65977 0.32242 0.0001955 0.59976 0.00036366 0.92219 0.00055916 606.3374369370557 67.052 0.23663 66.568 66.418 66.654 -0.48323 20 10 3 0 0 0 0.13008 1 36610 36610 42.312 16.044 1 1952300 25928 5216 17461 17802 30711 30711 0.06287140854351492 IYVWDHFI 8 Unmodified _IYVWDHFI_ 0 0 0 ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A ENST00000510445.1_1_5:93120070-93217196:-|nuORF ENST00000510445.1_1_5:93120070-93217196:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2823486328125 2 546.779285 1091.54402 -0.0015533 -8.4933E-07 3.6039 0.0019705 3.6023 0.0019697 546.7808963842303 71.701 0.33509 71.701 71.421 71.756 0 20 14 2 0 0 0 0.80624 1 39885 39885 2.8892 0.58649 1 753650 25929 2965 17462 17803 30712 30712 0.0019066179418132378 IYVYIYLSF 9 Unmodified _IYVYIYLSF_ 0 0 0 REV__ENST00000501122.2_1_11:65204545-65204752:+|nuORF REV__ENST00000501122.2_1_11:65204545-65204752:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2415771484375 3 394.214476 1179.6216 -0.29966 -0.00011813 -1.4048 -0.0005538 -1.7045 -0.00067192 394.21377067120505 51.489 0.53116 51.435 51.047 51.578 -0.053871 51 26 3 0 0 0 0.20528 1 27757 27757 2.7352 0.45242 1 6565400 + 25930 28013 17463 17804 30713 30713 0.038972549396930845 IYWDPLSY 8 Unmodified _IYWDPLSY_ 0 0 0 REV__ENSG00000164746|ENST00000348904|C7orf57 REV__ENSG00000164746|ENST00000348904|C7orf57 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7776489257812 2 528.755475 1055.4964 0.085444 4.5179E-05 0.50016 0.00026446 0.5856 0.00030964 528.7559585570248 40.56 0.18905 40.56 40.412 40.601 0 16 9 2 0 0 0 8.7369 1 21824 21824 8.5933 0 1 4262000 + 25931 21945 17464 17805 30714 30714 -0.029130371966630264 IYWDYYSN 8 Unmodified _IYWDYYSN_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.1615295410156 3 375.162552 1122.46583 NaN NaN NaN NaN NaN NaN NaN 62.525 1 62.525 62.025 63.025 0 0 0 0 0.97444 1 34876 34876 3.5965 1.098 1 + 25932 22981 17465 17806 30715 30715 -0.09050815581713323 IYWKIVPNF 9 Unmodified _IYWKIVPNF_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.7223205566406 3 393.890215 1178.64882 -1.0442 -0.00041132 3.4473 0.0013579 2.4031 0.00094656 394.2251509732128 32.77 0.24921 32.77 32.658 32.908 0 16 12 2 0 0 0 0.21798 1 17200 17200 1.1933 0.12188 1 1833400 + 25933 18998 17466 17807 30716 30716 0.06663783270732893 IYWKIVPNF 9 Unmodified _IYWKIVPNF_ 0 0 0 REV__nc|ENSG00000115607|O95256-2|IL18RAP REV__nc|ENSG00000115607|O95256-2|IL18RAP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 393.890215 1178.64882 -0.2249 -8.8584E-05 4.022 0.0015842 3.7971 0.0014956 394.2257227509551 32.87 0.21728 32.711 32.57 32.787 -0.15918 -0.029813 0.00026869 NaN 1.1933 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1262400 + 25934 18998 17466 17807 0.06663783270732893 IYWMVNYNF 9 Unmodified _IYWMVNYNF_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MSMS AL20221201_MKP_PDAC_01 4 625.2898559570312 2 625.289159 1248.56377 NaN NaN NaN NaN NaN NaN NaN 100.02 1 93.847 93.347 94.347 -6.1757 0 0 0 0.38239 1 66789 66789 20.871 10.047 1 25935 2782 17467 17808 30717 30717 -0.05057330257363901 IYWNNNVY 8 Unmodified _IYWNNNVY_ 0 0 0 REV__ENSG00000169375|ENST00000394947|SIN3A REV__ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2590942382812 2 543.256174 1084.49779 0.48542 0.00026371 4.1455 0.0022521 4.6309 0.0025158 543.258769810215 57.671 0.22009 57.671 57.597 57.817 0 16 10 2 0 0 0 0.72953 1 32118 32118 14.582 4.3983 1 2713300 + 25936 22395 17468 17809 30718 30718 -0.04107403107900609 IYWNRKQLTY 10 Unmodified _IYWNRKQLTY_ 0 0 0 ENSG00000151665|ENST00000281382|PIGF ENSG00000151665|ENST00000281382|PIGF ENSG00000151665|ENST00000281382|PIGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.3721923828125 2 692.872237 1383.72992 0.29619 0.00020522 -0.33141 -0.00022963 -0.035221 -2.4404E-05 692.8720351858299 65.03 0.34534 64.546 64.36 64.705 -0.48428 53 15 5 0 0 0 0.62068 1 35434 35434 10.074 3.8681 1 16665000 25937 6134 17469 17810 30719 30719 0.053404392428319625 IYWTKYYDF 9 Unmodified _IYWTKYYDF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.8074951171875 2 649.808239 1297.60193 0.83763 0.0005443 -1.0017 -0.00065089 -0.16403 -0.00010659 649.8075118180584 70.313 0.37251 70.349 70.153 70.526 0.035515 53 17 4 0 0 0 0.14 2 38651 38651;38764 29.082 12.932 1 17611000 25938 16067;16068 17470 17811 30720;30721 30720 -0.034971210710637024 IYWTKYYDF 9 Unmodified _IYWTKYYDF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.8090209960938 2 649.808239 1297.60193 0.054531 3.5434E-05 -0.059826 -3.8875E-05 -0.0052954 -3.441E-06 649.8082989879817 85.333 0.62254 79.157 78.785 79.407 -6.1757 59 38 2 0 0 0 0.044011 2 56136 56136;56301 47.749 28.492 1 19641000 25939 16067;16068 17470 17811 30722;30723 30722 -0.034971210710637024 IYWTKYYTL 9 Unmodified _IYWTKYYTL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8273315429688 2 625.826432 1249.63831 0.67616 0.00042316 0.49285 0.00030844 1.169 0.0007316 625.8269682556005 68.384 0.30096 68.409 68.261 68.562 0.025146 38 14 4 0 0 0 0.024882 1 37547 37547 58.679 28.042 1 11843000 25940 4672 17471 17812 30724 30724 0.023477558256672637 IYWTKYYTL 9 Unmodified _IYWTKYYTL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MSMS AL20221201_MKP_PDAC_01 4 625.8282470703125 2 625.826432 1249.63831 NaN NaN NaN NaN NaN NaN NaN 83.143 1 76.967 76.467 77.467 -6.1757 0 0 0 0.13831 1 54661 54661 38.176 9.094 1 25941 4672 17471 17812 30725 30725 0.023477558256672637 IYYCDDELQ 9 Unmodified _IYYCDDELQ_ 0 0 0 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 REV__nc|ENSG00000005302|Q8N5Y2-5|MSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8298645019531 3 387.830473 1160.46959 0.20375 7.9019E-05 -0.72574 -0.00028147 -0.522 -0.00020245 387.83016500848055 37.066 0.2826 37.066 36.897 37.18 0 24 13 2 0 0 0 0.58865 1 19687 19687 1.0715 0.29493 1 4545600 + 25942 16965 17472 17813 30726 30726 -0.10422513870184957 IYYFKANVF 9 Unmodified _IYYFKANVF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8088989257812 2 582.808042 1163.60153 0.72803 0.0004243 -0.71712 -0.00041795 0.01091 6.3584E-06 582.8076536829664 67.636 0.37422 67.654 67.455 67.829 0.018028 55 18 4 0 0 0 0.026094 2 37075 37075;37192 57.471 24.11 1 30837000 25943 2768 17473 17814 30727;30728 30727 0.02627503999747205 IYYFPKYPQ 9 Unmodified _IYYFPKYPQ_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8797912597656 3 406.877975 1217.6121 NaN NaN NaN NaN NaN NaN NaN 20.133 1 20.161 19.661 20.661 0.028357 0 0 0 0.85798 1 10181 10181 0.23584 0.095952 1 + 25944 20632 17474 17815 30729 30729 0.011994866541726878 IYYHLPHLL 9 Unmodified _IYYHLPHLL_ 0 0 0 ENSG00000071073|ENST00000393487|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2221984863281 3 390.221965 1167.64407 0.50294 0.00019626 0.33854 0.0001321 0.84148 0.00032836 390.2221172162685 64.871 0.52315 64.871 64.616 65.14 7.6294E-06 54 25 3 0 0 0 0.25681 1 35497 35497 19.257 16.759 1 3027800 25945 1050 17475 17816 30730 30730 0.06694899127978715 IYYHLPHLL 9 Unmodified _IYYHLPHLL_ 0 0 0 ENSG00000071073|ENST00000393487|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2220153808594 3 390.221965 1167.64407 0.7097 0.00027694 1.7103 0.00066741 2.42 0.00094435 390.2229574781251 92.918 0.21629 86.743 86.59 86.806 -6.1757 20 13 2 0 0 0 0.042911 1 61467 61467 48.346 32.197 1 11763000 25946 1050 17475 17816 30731 30731 0.06694899127978715 IYYHMCNL 8 Unmodified _IYYHMCNL_ 0 0 0 REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF REV__ENST00000368885.7_1_6:111214828-111215200:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1605529785156 3 352.826229 1055.45686 0.44368 0.00015654 1.073 0.0003786 1.5167 0.00053514 352.8275565724957 71.238 0.5407 70.761 70.505 71.045 -0.47735 39 23 3 0 0 0 0.79783 1 38980 38980 7.9102 2.1783 1 1114900 + 25947 26024 17476 17817 30732 30732 -0.06865203743382153 IYYIDMQKF 9 Oxidation (M) _IYYIDM(Oxidation (M))QKF_ IYYIDM(1)QKF IYYIDM(52)QKF 0 0 1 nc|ENSG00000136636|Q9Y597-2|KCTD3;ENSG00000136636|ENST00000259154|KCTD3 nc|ENSG00000136636|Q9Y597-2|KCTD3 nc|ENSG00000136636|Q9Y597-2|KCTD3 MSMS AL20221201_MKP_PDAC_01 4 618.8021850585938 2 618.8021 1235.58965 NaN NaN NaN NaN NaN NaN NaN 58.203 1 52.176 51.676 52.676 -6.0275 0 0 0 0.068038 1 37284 37284 51.63 19.324 1 25948 4840 17477 17818 30733 30733 875 -0.018724808057640985 IYYKTISY 8 Unmodified _IYYKTISY_ 0 0 0 ENSG00000204022|ENST00000371939|LIPJ ENSG00000204022|ENST00000371939|LIPJ ENSG00000204022|ENST00000371939|LIPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1050.565063476562 1 1050.55062 1049.54335 0.68001 0.00071438 -3.0898 -0.003246 -2.4098 -0.0025317 1050.546470721838 49.781 0.4693 49.389 49.119 49.588 -0.3923 64 23 5 0 0 0 0.77186 1 26694 26694 10.824 1.4408 1 11644000 25949 10237 17478 17819 30734 30734 0.02055822354486736 IYYLGNKSL 9 Unmodified _IYYLGNKSL_ 0 0 0 ENST00000560194.1_1_15:65804381-65804891:-|nuORF ENST00000560194.1_1_15:65804381-65804891:-|nuORF ENST00000560194.1_1_15:65804381-65804891:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3032836914062 2 535.797675 1069.5808 0.1866 9.9978E-05 0.042618 2.2834E-05 0.22921 0.00012281 535.7977267360421 58.292 0.59421 57.801 57.618 58.212 -0.49079 79 28 5 0 0 0 0.46577 1 31797 31797 9.3474 0 1 29066000 25950 15307 17479 17820 30735 30735 0.04878913620086678 IYYMDTDWN 9 Unmodified _IYYMDTDWN_ 0 0 0 REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2 REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7509155273438 2 610.750064 1219.48558 0.31044 0.0001896 -0.12145 -7.4175E-05 0.189 0.00011543 610.7501063805977 38.238 0.52861 38.238 38.049 38.577 0 148 37 5 0 0 0 0.54444 1 20578 20578 4.756 1.1595 1 187090000 + 25951 19892 17480 17821 30736 30736 -0.11538807633269244 IYYMDTDWN 9 Unmodified _IYYMDTDWN_ 0 0 0 REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2 REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 610.750064 1219.48558 0.05891 3.5979E-05 0.5444 0.00033249 0.60331 0.00036847 610.750549270044 38.677 0.30347 38.39 38.217 38.52 -0.28687 0.017643 0.00042879 NaN 4.756 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 10633000 + 25952 19892 17480 17821 -0.11538807633269244 IYYMRCNCRS 10 Unmodified _IYYMRCNCRS_ 0 0 0 REV__nc|ENSG00000007202|Q14667-2|BLTP2 REV__nc|ENSG00000007202|Q14667-2|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.2839965820312 2 654.785935 1307.55732 -0.37907 -0.00024821 -0.71089 -0.00046548 -1.09 -0.00071369 654.7853054887867 70.961 0.2541 70.961 70.836 71.09 0 30 17 3 0 0 0 0.65282 1 39502 39502 8.1555 1.4324 1 1964900 + 25953 17005 17481 17822 30737 30737 -0.08415914752049503 IYYMRCNCRS 10 Unmodified _IYYMRCNCRS_ 0 0 0 REV__nc|ENSG00000007202|Q14667-2|BLTP2 REV__nc|ENSG00000007202|Q14667-2|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.7861938476562 2 654.785935 1307.55732 0.49889 0.00032666 -0.39346 -0.00025763 0.10543 6.9032E-05 654.7858888984448 71.437 0.37295 70.959 70.747 71.12 -0.47736 60 15 5 0 0 0 0.38092 1 39115 39115 22.736 0.98964 1 15449000 + 25954 17005 17481 17822 30738 30738 -0.08415914752049503 IYYNDVYAF 9 Unmodified _IYYNDVYAF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4 ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8520812988281 3 389.850085 1166.52843 NaN NaN NaN NaN NaN NaN NaN 53.106 1 53.042 52.542 53.542 -0.063423 0 0 0 0.7453 1 28789 28789 8.1555 0.8663 1 25955 2228 17482 17823 30739 30739 -0.0481766951352256 IYYPDGWSTL 10 Unmodified _IYYPDGWSTL_ 0 0 0 REV__ENSG00000047578|ENST00000261588|KATNIP REV__ENSG00000047578|ENST00000261588|KATNIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 607.7903442382812 2 607.790047 1213.56554 1.0345 0.00062879 0.046299 2.814E-05 1.0808 0.00065693 608.2913450819087 59.147 0.23217 53.073 52.868 53.1 -6.0745 17 12 2 0 0 0 0.21952 1 37953 37953 21.747 4.6338 1 18345000 + 25956 17228 17483 17824 30740 30740 -0.03269997967754534 IYYQGLDTI 9 Unmodified _IYYQGLDTI_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2791748046875 2 543.279315 1084.54408 0.24862 0.00013507 1.1947 0.00064903 1.4433 0.0007841 543.2803594751641 88.362 0.28586 87.858 87.805 88.091 -0.50423 20 12 2 0 0 0 0.49272 1 48349 48349 7.9102 0.62092 1 583780 25957 9902 17484 17825 30741 30741 0.005186170035358373 IYYRVQHWT 9 Unmodified _IYYRVQHWT_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5532531738281 3 422.552374 1264.63529 0.83221 0.00035165 -0.0067787 -2.8644E-06 0.82543 0.00034879 422.5523867476751 31.553 0.32842 27.858 27.738 28.066 -3.6958 33 17 3 0 0 0 0.1773 1 17873 17873 18.373 6.1455 1 74802000 25958 16057 17485 17826 30742 30742 0.013559254914980556 IYYTGKYQSL 10 Unmodified _IYYTGKYQSL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8214111328125 2 618.318971 1234.62339 0.19111 0.00011817 0.4285 0.00026495 0.61961 0.00038312 618.3187924514258 42.699 0.29427 42.392 42.277 42.571 -0.30682 26 12 3 0 0 0 0.025861 1 22701 22701 70.332 48.585 1 13455000 25959 315 17486 17827 30743 30743 0.015462639576753645 IYYTGKYQSL 10 Unmodified _IYYTGKYQSL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.319580078125 2 618.318971 1234.62339 0.55665 0.00034419 0.7126 0.00044061 1.2692 0.0007848 618.8212131156415 42.439 0.24302 42.43 42.296 42.539 -0.0088234 20 10 3 0 0 0 0.0069983 1 22706 22706 93.166 53.209 1 9602900 25960 315 17486 17827 30744 30744 0.015462639576753645 IYYTGKYQSL 10 Unmodified _IYYTGKYQSL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3199462890625 2 618.318971 1234.62339 0.941 0.00058184 0.070054 4.3316E-05 1.0111 0.00062515 618.3190036638412 47.857 0.41597 42.623 42.435 42.851 -5.2339 69 25 4 0 0 0 0.00018404 2 29799 29660;29799 117.84 69.492 1 57460000 25961 315 17486 17827 30745;30746 30746 0.015462639576753645 IYYTYTVF 8 Unmodified _IYYTYTVF_ 0 0 0 REV__ENST00000405709.6_1_7:110303289-110303394:-|nuORF REV__ENST00000405709.6_1_7:110303289-110303394:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.267822265625 2 535.265676 1068.5168 0.3591 0.00019222 1.3906 0.00074436 1.7497 0.00093658 535.2667870819638 39.404 0.5647 39.404 39.135 39.7 0 102 26 6 0 0 0 0.67481 1 21255 21255 19.439 0 1 138060000 + 25962 26649 17487 17828 30747 30747 -0.014718665368491202 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.8115844726562 2 587.810782 1173.60701 0.082597 4.8551E-05 0.23517 0.00013823 0.31776 0.00018678 587.8109671766478 58.76 0.15588 58.76 58.654 58.809 0 10 6 2 0 0 0 0.2289 1 32717 32717 27.629 9.4825 1 997970 25963 6726 17488 17829 30748 30748 0.027151827915531612 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.310791015625 2 587.810782 1173.60701 0.25817 0.00015176 0.7626 0.00044826 1.0208 0.00060002 587.8111581726589 59.355 0.3416 58.865 58.707 59.048 -0.49079 55 15 5 0 0 0 0.014182 2 32249 32249;32355 85.642 23.32 1 28710000 25964 6726 17488 17829 30749;30750 30749 0.027151827915531612 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3124389648438 2 587.810782 1173.60701 0.58244 0.00034236 0.19779 0.00011626 0.78023 0.00045863 587.81069543219 59.003 0.32313 58.942 58.782 59.105 -0.060722 41 15 4 0 0 0 0.060956 2 32114 32114;32214 53.833 23.196 1 10998000 25965 6726 17488 17829 30751;30752 30751 0.027151827915531612 IYYVDVQKF 9 Unmodified _IYYVDVQKF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8112182617188 2 587.810782 1173.60701 0.64519 0.00037925 1.3459 0.00079112 1.9911 0.0011704 587.8115608801996 65.03 0.6152 58.854 58.606 59.221 -6.1757 88 33 3 0 0 0 0.01085 3 42059 42059;42185;42331 92.491 23.069 1 92774000 25966 6726 17488 17829 30753;30754;30755 30753 0.027151827915531612 KAADPVPSF 9 Unmodified _KAADPVPSF_ 0 0 0 ENSG00000176208|ENST00000321990|ATAD5;nc|ENSG00000176208|Q96QE3-2|ATAD5;ENST00000585133.1_1_17:29162236-29196669:+|nuORF ENSG00000176208|ENST00000321990|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.248779296875 2 466.247818 930.481082 1.2596 0.00058727 0.9403 0.00043841 2.1999 0.0010257 466.2481213832345 42.656 0.2519 42.656 42.524 42.776 0 22 12 3 0 0 0 0.078314 1 23111 23111 38.176 14.155 1 2107700 25967 8575 17489 17830 30756 30756 0.013060960061466176 KAAELLQDEY 10 Unmodified _KAAELLQDEY_ 0 0 0 ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483832.5_1_1:155581756-155582119:+|nuORF;nc|ENSG00000125459|Q9BUK6-5|MSTO1;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1 ENST00000494995.5_1_1:155580896-155583988:+|nuORF ENST00000494995.5_1_1:155580896-155583988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2998046875 2 590.298236 1178.58192 NaN NaN NaN NaN NaN NaN NaN 40.117 1 40.117 39.617 40.617 0 0 0 0 0.90788 1 21546 21546 7.609 3.6646 1 25968 14344 17490 17831 30757 30757 -0.00022916801685823884 KAAEVMRATSD 11 Unmodified _KAAEVMRATSD_ 0 0 0 REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1981201171875 3 393.53265 1177.57612 -0.17815 -7.0107E-05 -0.28022 -0.00011028 -0.45837 -0.00018038 393.53243822302585 54.134 0.18063 54.068 53.981 54.162 -0.066936 11 8 2 0 0 0 0.30577 1 29378 29378 0.40827 0.13925 1 883100 + 25969 22610 17491 17832 30758 30758 -0.005563385849882252 KAALVAGV 8 Unmodified _KAALVAGV_ 0 0 0 nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC nc|ENSG00000290691|A6NGW2|STRCP1 nc|ENSG00000290691|A6NGW2|STRCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7386169433594 2 364.736889 727.459225 NaN NaN NaN NaN NaN NaN NaN 64.59 1 64.579 64.079 65.079 -0.010529 0 0 0 0.97444 1 35373 35373 0.69038 0 1 25970 10704 17492 17833 30759 30759 0.08459336048235855 KAAPHQAM 8 Unmodified _KAAPHQAM_ 0 0 0 REV__nc|ENSG00000124253|P35558-2|PCK1 REV__nc|ENSG00000124253|P35558-2|PCK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2219848632812 2 427.22108 852.427607 0.66525 0.00028421 -0.72619 -0.00031024 -0.060938 -2.6034E-05 427.2210513966153 17.669 0.19097 15.083 15.007 15.198 -2.5866 38 28 2 0 0 0 0.80311 1 9240 9240 4.756 1.8668 1 5386900 + 25971 19434 17493 17834 30760 30760 -0.0045097997737002515 KAAQFEFF 8 Unmodified _KAAQFEFF_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2510070800781 2 494.25036 986.486168 0.69032 0.00034119 -0.35398 -0.00017495 0.33634 0.00016624 494.2503875352224 83.91 0.33044 83.411 83.241 83.572 -0.49961 25 13 3 0 0 0 0.64853 1 45913 45913 21.747 7.165 1 1112800 + 25972 19932 17494 17835 30761 30761 -0.007616001312385379 KAAQFEFF 8 Unmodified _KAAQFEFF_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2510681152344 2 494.25036 986.486168 0.65082 0.00032167 0.74425 0.00036785 1.3951 0.00068951 494.2507269853238 83.244 0.22631 83.308 83.157 83.383 0.063171 18 8 3 0 0 0 0.57045 1 46043 46043 28.487 5.3384 1 4631000 + 25973 19932 17494 17835 30762 30762 -0.007616001312385379 KAAQFEFF 8 Unmodified _KAAQFEFF_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.25036 986.486168 0.69032 0.00034119 -0.35398 -0.00017495 0.33634 0.00016624 494.2503875352224 83.91 0.33044 83.411 83.241 83.572 -0.49961 0.051586 -0.00062768 NaN 28.487 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1112800 + 25974 19932 17494 17835 -0.007616001312385379 KAAQFEFF 8 Unmodified _KAAQFEFF_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 494.25036 986.486168 0.65082 0.00032167 0.74425 0.00036785 1.3951 0.00068951 494.2507269853238 83.244 0.22631 83.308 83.157 83.383 0.063171 -0.051586 0.00045792 NaN 28.487 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4631000 + 25975 19932 17494 17835 -0.007616001312385379 KACERSSQDF 10 Unmodified _KACERSSQDF_ 0 0 0 ENST00000335765.8_1_17:26874042-26874168:-|nuORF ENST00000335765.8_1_17:26874042-26874168:-|nuORF ENST00000335765.8_1_17:26874042-26874168:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7642211914062 2 585.764037 1169.51352 0.092157 5.3982E-05 0.84406 0.00049442 0.93621 0.0005484 585.764360328156 63.056 0.44613 63.056 62.749 63.195 0 48 18 4 0 0 0 0.40136 1 35075 35075 21.537 1.0834 1 7178600 25976 11902 17495 17836 30763 30763 -0.06445484653181666 KACRQPPIVF 10 Unmodified _KACRQPPIVF_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2628784179688 2 579.826243 1157.63793 0.047329 2.7442E-05 -2.5907 -0.0015022 -2.5434 -0.0014747 579.8243931352998 38.163 0.19592 37.891 37.822 38.018 -0.27133 11 8 2 0 0 0 0.23896 1 20144 20144 3.5965 0 1 905760 25977 9778 17496 17837 30764 30764 0.065420576248016 KADESVESW 9 Unmodified _KADESVESW_ 0 0 0 REV__ENSG00000114738|ENST00000621469|MAPKAPK3 REV__ENSG00000114738|ENST00000621469|MAPKAPK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.286376953125 2 525.740554 1049.46655 1.1948 0.00062816 -2.6452 -0.0013907 -1.4504 -0.00076251 525.7384473437733 54.494 0.28825 54.494 54.309 54.597 0 17 12 2 0 0 0 0.16895 1 30178 30178 13.042 0.80181 1 1852500 + 25978 18929 17497 17838 30765 30765 -0.05620020932656189 KADGVPVYL 9 Unmodified _KADGVPVYL_ 0 0 0 ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF ENSG00000115944|ENST00000234301|COX7A2L ENSG00000115944|ENST00000234301|COX7A2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7726135253906 2 481.271293 960.528032 0.8265 0.00039777 -0.41679 -0.00020059 0.40971 0.00019718 481.27103394290026 51.16 0.43392 51.16 50.978 51.412 0 56 20 4 0 0 0 0.10247 1 28182 28182 32.786 3.7041 1 59630000 25979 3176 17498 17839 30766 30766 0.04618955557270965 KADGVPVYL 9 Unmodified _KADGVPVYL_ 0 0 0 ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF ENSG00000115944|ENST00000234301|COX7A2L ENSG00000115944|ENST00000234301|COX7A2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2723083496094 2 481.271293 960.528032 0.84108 0.00040479 0.82485 0.00039697 1.6659 0.00080176 481.2719507150021 57.006 0.3224 51.03 50.859 51.181 -5.9769 44 19 3 0 0 0 0.10247 1 36493 36493 32.786 3.7041 1 86312000 25980 3176 17498 17839 30767 30767 0.04618955557270965 KADNVKLMHL 10 Unmodified _KADNVKLMHL_ 0 0 0 nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.830322265625 2 584.828983 1167.64341 2.6344 0.0015407 -0.74381 -0.000435 1.8906 0.0011057 584.8282643696432 96.317 0.4528 96.31 96.163 96.616 -0.007019 21 15 2 0 0 0 0.62068 1 53515 53515 10.074 6.1295 1 2063200 25981 6496 17499 17840 30768 30768 0.06629736416630294 KAEFIQGNRF 10 Unmodified _KAEFIQGNRF_ 0 0 0 nc|ENSG00000164125|Q6UWH4-3|GASK1B nc|ENSG00000164125|Q6UWH4-3|GASK1B nc|ENSG00000164125|Q6UWH4-3|GASK1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.32275390625 2 605.32238 1208.63021 0.47749 0.00028904 1.2074 0.00073088 1.6849 0.0010199 605.3231352923276 34.761 0.32876 30.666 30.473 30.801 -4.0951 34 19 2 0 0 0 0.16361 1 20014 20014 38.176 3.2435 1 13380000 25982 16332 17500 17841 30769 30769 0.034236216288718424 KAETEASKAIE 11 Unmodified _KAETEASKAIE_ 0 0 0 nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000553671.6_1_15:91478554-91486156:+|nuORF nc|ENSG00000140553|Q9H3U1-2|UNC45A nc|ENSG00000140553|Q9H3U1-2|UNC45A MSMS AL20221201_MKP_PDAC_01 4 392.8770141601562 3 392.875071 1175.60338 NaN NaN NaN NaN NaN NaN NaN 76.295 1 70.119 69.619 70.619 -6.1757 0 0 0 0.81193 1 49906 49906 6.2344 0.36622 1 25983 5252 17501 17842 30770 30770 0.022604682270639387 KAFDCDVW 8 Unmodified _KAFDCDVW_ 0 0 0 ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2168273925781 2 492.218203 982.421853 0.16538 8.1401E-05 -1.4378 -0.0007077 -1.2724 -0.0006263 492.216820917504 81.593 0.32104 81.593 81.394 81.715 0 44 16 4 0 0 0 0.80992 1 45329 45329 0.69038 0 1 1037400 25984 9943 17502 17843 30771 30771 -0.07006123279700205 KAFFIFLAL 9 Unmodified _KAFFIFLAL_ 0 0 0 nc|ENSG00000286920|Q5STR5|SMIM40 nc|ENSG00000286920|Q5STR5|SMIM40 nc|ENSG00000286920|Q5STR5|SMIM40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.53857421875 3 357.219673 1068.63719 -0.095542 -3.413E-05 1.4096 0.00050352 1.314 0.00046939 357.221339593168 41.272 0.13804 41.27 41.2 41.338 -0.0017929 14 6 3 0 0 0 0.209 1 22077 22077 4.5289 0.65253 1 2168700 25985 16623 17503 17844 30772 30772 0.10561586247399646 KAFPNYDIK 9 Unmodified _KAFPNYDIK_ 0 0 0 REV__nc|ENSG00000174197|Q8IWI9-3|MGA REV__nc|ENSG00000174197|Q8IWI9-3|MGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8663330078125 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 5.1602 1 5.1612 4.6612 5.6612 0.0010915 0 0 0 0.85798 1 2600 2600 0.23584 0 1 + 25986 22773 17504 17845 30773 30773 0.032540294773070855 KAFSRSENLI 10 Unmodified _KAFSRSENLI_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8240356445312 2 582.822212 1163.62987 1.0375 0.00060467 -1.3748 -0.00080125 -0.33729 -0.00019658 582.822329956801 62.376 0.43214 56.2 55.966 56.398 -6.1757 48 23 3 0 0 0 0.16361 1 40276 40276 38.176 0.20157 1 21226000 25987 1674 17505 17846 30774 30774 0.054602019090452814 KAFSYLKSF 9 Unmodified _KAFSYLKSF_ 0 0 0 nc|ENSG00000173875|Q3KP31-2|ZNF791;ENSG00000173875|ENST00000343325|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 nc|ENSG00000173875|Q3KP31-2|ZNF791 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2027893066406 3 364.20257 1089.58588 0.98095 0.00035726 0.72257 0.00026316 1.7035 0.00062043 364.2027386515059 50.534 0.20435 50.481 50.325 50.53 -0.053871 21 9 3 0 0 0 0.56862 1 27312 27312 1.9064 0 1 1193700 25988 8372 17506 17847 30775 30775 0.044672174827155686 KAGFNSYAEL 10 Unmodified _KAGFNSYAEL_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MSMS AL20221201_MKP_PDAC_01 4 550.2727661132812 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 17.776 1 15.189 14.689 15.689 -2.5866 0 0 0 0.97302 1 9323 9323 3.5965 1.019 1 25989 9717 17507 17848 30776 30776 -0.010751512820206699 KAGVLRRL 8 Unmodified _KAGVLRRL_ 0 0 0 REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF REV__ENST00000591473.1_1_19:36705638-36705767:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.61083984375 1 912.610146 911.602869 1.1492 0.0010488 0.18966 0.00017309 1.3389 0.0012219 912.6104593342866 103.31 0.15409 97.134 97.076 97.23 -6.1757 59 39 2 0 0 0 0.80992 1 69258 69258 0.69038 0 1 11428000 + 25990 29163 17508 17849 30777 30777 0.1435318287917653 KAISALVPQG 10 Unmodified _KAISALVPQG_ 0 0 0 nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;nc|ENSG00000182979|Q13330-2|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2817077636719 2 492.297842 982.581131 0.76528 0.00037675 2.5334 0.0012472 3.2986 0.0016239 492.2988326696058 62.69 0.24411 62.204 62.041 62.285 -0.48617 21 11 2 0 0 0 0.22769 1 34129 34129 16.149 2.6412 1 4314300 25991 9106 17509 17850 30778 30778 0.08914333339953373 KAIYLATDVV 10 Unmodified _KAIYLATDVV_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.818115234375 2 546.818607 1091.62266 0.27031 0.00014781 -0.036477 -1.9946E-05 0.23383 0.00012787 546.8185611994966 35.904 0.32095 35.904 35.732 36.053 0 47 15 4 0 0 0 0.65023 1 19086 19086 9.3831 0 1 53989000 + 25992 23742 17510 17851 30779 30779 0.08051469308611559 KAKAAAAD 8 Unmodified _KAKAAAAD_ 0 0 0 ENST00000591390.1_1_19:640215-640473:+|nuORF ENST00000591390.1_1_19:640215-640473:+|nuORF ENST00000591390.1_1_19:640215-640473:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.7358703613281 2 373.213778 744.413003 0.32683 0.00012198 -1.2449 -0.00046463 -0.91812 -0.00034265 373.2132219171966 69.599 0.49098 69.63 69.392 69.883 0.030914 58 27 3 0 0 0 8.7369 1 38357 38357 0.69038 0 1 31373000 25993 15705 17511 17852 30780 30780 0.030572711461218205 KAKHLFHI 8 Unmodified _KAKHLFHI_ 0 0 0 REV__ENSG00000188505|ENST00000339852|NCCRP1 REV__ENSG00000188505|ENST00000339852|NCCRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.303466796875 2 497.303262 992.59197 0.6423 0.00031942 -0.86338 -0.00042936 -0.22108 -0.00010995 497.302816724987 82.054 0.35629 81.559 81.342 81.698 -0.4952 30 13 3 0 0 0 0.80624 1 44998 44998 2.8892 0 1 1329900 + 25994 23713 17512 17853 30781 30781 0.0953778050488836 KAKIPKVP 8 Unmodified _KAKIPKVP_ 0 0 0 REV__nc|ENSG00000171533|Q96JE9-2|MAP6 REV__nc|ENSG00000171533|Q96JE9-2|MAP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.4696655273438 2 440.802563 879.590573 NaN NaN NaN NaN NaN NaN NaN 36.417 1 36.417 35.917 36.917 0 0 0 0 0.97444 1 19314 19314 0.69038 0.69038 1 + 25995 22573 17513 17854 30782 30782 0.1459614641613598 KAKKKKLKVSA 11 Unmodified _KAKKKKLKVSA_ 0 0 0 ENSG00000111358|ENST00000543341|GTF2H3;nc|ENSG00000111358|Q13889-2|GTF2H3;ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENSG00000111358|ENST00000543341|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 MSMS AL20221201_MKP_PDAC_01 4 410.2883605957031 3 410.286969 1227.83908 NaN NaN NaN NaN NaN NaN NaN 104.39 1 98.209 97.709 98.709 -6.1757 0 0 0 0.94337 1 69911 69911 0.094841 0.011491 1 25996 2785 17514 17855 30783 30783 0.23427069932995437 KAKKLKRMKK 10 Unmodified _KAKKLKRMKK_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN;MKL2-PARN|1|fusion nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MSMS AL20221201_MKP_PDAC_01 4 629.9260864257812 2 629.928835 1257.84312 NaN NaN NaN NaN NaN NaN NaN 105.87 1 99.69 99.19 100.19 -6.1757 0 0 0 1.0024 1 70901 70901 0.40072 0.1317 1 25997 5265 17515 17856 30784 30784 0.2245083615503063 KAKLEEHFK 9 Unmodified _KAKLEEHFK_ 0 0 0 ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;nc|ENSG00000065150|O00410-2|IPO5 ENSG00000065150|ENST00000651721|IPO5 ENSG00000065150|ENST00000651721|IPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2173156738281 3 377.216991 1128.62914 0.64225 0.00024227 -1.4229 -0.00053674 -0.78065 -0.00029447 377.2165293908481 22.961 0.31498 20.182 20.058 20.373 -2.7784 32 19 2 0 0 0 0.2143 1 12488 12488 15.248 3.7538 1 13968000 25998 892 17516 17857 30785 30785 0.06997407259973443 KAKSLLVVHF 10 Unmodified _KAKSLLVVHF_ 0 0 0 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7561645507812 2 571.358234 1140.70191 NaN NaN NaN NaN NaN NaN NaN 89.411 1 89.411 88.911 89.911 0 0 0 0 1.0019 1 49473 49473 0.45834 0 1 25999 2540 17517 17858 30786 30786 0.13719161053427342 KAKYPFKKR 9 Unmodified _KAKYPFKKR_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000358729.8_1_1:110163725-110168306:+|nuORF ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.230224609375 3 389.244992 1164.71315 -0.1599 -6.224E-05 -4.1753 -0.0016252 -4.3352 -0.0016875 389.2430246838582 54.139 0.099194 54.072 53.981 54.081 -0.066936 6 4 2 0 0 0 0.21572 1 29398 29398 2.2828 0 1 673020 26000 3214 17518 17859 30787 30787 0.1373798314753003 KALDLSLYL 9 Unmodified _KALDLSLYL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3075561523438 2 518.307875 1034.6012 1.4073 0.00072942 0.4251 0.00022033 1.8324 0.00094975 518.3079558566964 96.647 0.21721 90.471 90.37 90.587 -6.1757 26 12 3 0 0 0 0.0086722 1 64027 64027 88.954 34.18 1 34422000 26001 7176 17519 17860 30788 30788 0.08528084279896575 KALELAHLKSF 11 Unmodified _KALELAHLKSF_ 0 0 0 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5854187011719 3 419.583562 1255.72886 NaN NaN NaN NaN NaN NaN NaN 44.856 1 44.54 44.04 45.04 -0.31585 0 0 0 0.94221 1 23941 23941 0.92553 0.149 1 26002 547 17520 17861 30789 30789 0.11122224873929554 KALEVFPEF 9 Unmodified _KALEVFPEF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2920532226562 2 540.292225 1078.5699 0.11584 6.2586E-05 -0.21024 -0.00011359 -0.094404 -5.1006E-05 540.2918889150776 71.996 0.37938 71.996 71.84 72.219 0 23 17 2 0 0 0 0.28023 1 40062 40062 18.146 3.3081 1 1336600 26003 5828 17521 17862 30790 30790 0.03375511245803864 KALEVFPEF 9 Unmodified _KALEVFPEF_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2925415039062 2 540.292225 1078.5699 0.44217 0.0002389 -0.30968 -0.00016732 0.13249 7.1583E-05 540.2918901316793 72.364 0.31125 71.888 71.709 72.02 -0.47609 35 14 3 0 0 0 0.08691 2 39648 39553;39648 36.127 10.728 1 3655200 26004 5828 17521 17862 30791;30792 30792 0.03375511245803864 KALKPKTKQ 9 Unmodified _KALKPKTKQ_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 521.342041015625 2 521.342584 1040.67061 NaN NaN NaN NaN NaN NaN NaN 109.07 1 102.9 102.4 103.4 -6.1757 0 0 0 0.85852 1 72866 72866 0.45834 0.10771 1 + 26005 21279 17522 17863 30793 30793 0.15190588019322604 KALKPKTKQ 9 Unmodified _KALKPKTKQ_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 521.3433227539062 2 521.342584 1040.67061 NaN NaN NaN NaN NaN NaN NaN 109.25 1 103.08 102.58 103.58 -6.1757 0 0 0 0.85852 1 72975 72975 0.45834 0.10771 1 + 26006 21279 17522 17863 30794 30794 0.15190588019322604 KALNRFEKL 9 Unmodified _KALNRFEKL_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5608825683594 3 373.560869 1117.66078 -0.24798 -9.2635E-05 0.0573 2.1405E-05 -0.19068 -7.123E-05 373.5609062051692 31.456 0.25881 31.486 31.368 31.627 0.030106 25 11 3 0 0 0 0.10247 1 16499 16499 32.786 10.049 1 10705000 26007 6920 17523 17864 30795 30795 0.1066540001395424 KALNRFEKL 9 Unmodified _KALNRFEKL_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.560869 1117.66078 -0.2968 -0.00011087 0.31563 0.00011791 0.018826 7.0325E-06 373.894799436632 31.724 0.097033 31.724 31.681 31.778 0 0.11907 0.00027862 NaN 32.786 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 498060 26008 6920 17523 17864 0.1066540001395424 KALVHGRR 8 Unmodified _KALVHGRR_ 0 0 0 REV__ENSG00000167244|ENST00000416167|IGF2 REV__ENSG00000167244|ENST00000416167|IGF2 MSMS AL20221201_MKP_PDAC_01 4 468.7973937988281 2 468.796135 935.577717 NaN NaN NaN NaN NaN NaN NaN 107.43 1 101.26 100.76 101.76 -6.1757 0 0 0 0.97444 1 71857 71857 0.69038 0 1 + 26009 22195 17524 17865 30796 30796 0.10735128076612455 KAMWLARRRRR 11 Unmodified _KAMWLARRRRR_ 0 0 0 REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 750.9542236328125 2 750.451862 1498.88917 -0.0040554 -3.0433E-06 -0.14364 -0.00010779 -0.14769 -0.00011084 750.4517510356418 97.293 0.65187 97.293 96.95 97.602 0 98 31 4 0 0 0 0.7453 3 53624 53624;53724;53828 0 0 1 7351200 + 26010 26602 17525 17866 30797;30798;30799 30797 0.15968294109802628 KAMWLARRRRR 11 Unmodified _KAMWLARRRRR_ 0 0 0 REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 750.9542236328125 2 750.451862 1498.88917 -0.0040554 -3.0433E-06 -0.14364 -0.00010779 -0.14769 -0.00011084 750.4517510356418 97.293 0.65187 97.293 96.95 97.602 0 98 31 4 0 0 0 0.30605 1 53624 53624 0 0 1 7351200 + 26011 26602 17525 17866 30800 30800 0.15968294109802628 KAMWLARRRRR 11 Unmodified _KAMWLARRRRR_ 0 0 0 REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 750.4521484375 2 750.451862 1498.88917 0.70022 0.00052548 -0.136 -0.00010207 0.56421 0.00042341 750.45144094295 101.81 0.33305 95.633 95.606 95.939 -6.1757 48 17 3 0 0 0 0.7453 1 68472 68472 0 0 1 16633000 + 26012 26602 17525 17866 30801 30801 0.15968294109802628 KAMWLARRRRR 11 Unmodified _KAMWLARRRRR_ 0 0 0 REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF REV__ENST00000400913.5_1_1:6535562-6545948:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 750.451862 1498.88917 0.12899 9.6799E-05 -0.99007 -0.000743 -0.86108 -0.0006462 750.4511021034823 97.711 0.83762 97.468 97.081 97.919 -0.24277 0.08732 -0.00052784 NaN 0 148 37 5 NaN NaN NaN NaN 0 NaN NaN 0 56041000 + 26013 26602 17525 17866 0.15968294109802628 KANAPDFYEI 10 Unmodified _KANAPDFYEI_ 0 0 0 REV__ENSG00000138617|ENST00000649807|PARP16 REV__ENSG00000138617|ENST00000649807|PARP16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2871704101562 2 584.287671 1166.56079 0.35839 0.0002094 -0.084911 -4.9612E-05 0.27348 0.00015979 584.2868515254177 65.668 0.95482 59.492 59.162 60.117 -6.1757 145 55 3 0 0 0 0.38092 1 42459 42459 22.736 1.1993 1 117840000 + 26014 20346 17526 17867 30802 30802 -0.015828821105287716 KANHPVHGLCT 11 Unmodified _KANHPVHGLCT_ 0 0 0 ENST00000500148.6_1_5:80534879-80534975:-|nuORF ENST00000500148.6_1_5:80534879-80534975:-|nuORF ENST00000500148.6_1_5:80534879-80534975:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8713073730469 3 392.869597 1175.58696 NaN NaN NaN NaN NaN NaN NaN 79.475 1 79.53 79.03 80.03 0.05497 0 0 0 0.93224 1 43915 43915 2.6312 0 1 26015 14439 17527 17868 30803 30803 0.0061910857996281266 KAPALSILL 9 Unmodified _KAPALSILL_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-2|NISCH nc|ENSG00000010322|Q9Y2I1-2|NISCH MSMS AL20221201_MKP_PDAC_01 4 462.9734191894531 2 463.307678 924.600803 NaN NaN NaN NaN NaN NaN NaN 105.74 1 99.56 99.06 100.06 -6.1757 0 0 0 0.84564 1 70826 70826 2.0598 0 1 26016 421 17528 17869 30804 30804 0.13548709350698118 KAPELLAKY 9 Unmodified _KAPELLAKY_ 0 0 0 ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 ENSG00000108094|ENST00000374749|CUL2 ENSG00000108094|ENST00000374749|CUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8080444335938 2 516.808042 1031.60153 -0.033176 -1.7145E-05 0.79991 0.0004134 0.76673 0.00039625 516.8083662969005 30.848 0.23359 30.878 30.737 30.97 0.030104 16 9 2 0 0 0 0.34134 1 16145 16145 15.248 3.6082 1 1106300 26017 2546 17529 17870 30805 30805 0.08699503999764602 KAPGPGGF 8 Unmodified _KAPGPGGF_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.6973876953125 2 365.697764 729.380974 -0.096495 -3.5288E-05 -0.0038021 -1.3904E-06 -0.1003 -3.6679E-05 365.69775279592335 51.343 0.15167 50.93 50.798 50.949 -0.41351 11 7 2 0 0 0 0.78849 1 27659 27659 9.3474 6.4582 1 1502300 + 26018 24504 17530 17871 30806 30806 0.005459034630007409 KAPIPLWSI 9 Unmodified _KAPIPLWSI_ 0 0 0 REV__ENSG00000166450|ENST00000389286|PRTG REV__ENSG00000166450|ENST00000389286|PRTG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3226318359375 2 512.813128 1023.6117 0.56141 0.0002879 0.15429 7.9121E-05 0.71569 0.00036702 512.8130178682749 73.85 0.6227 73.894 73.635 74.258 0.043983 131 28 6 0 0 0 0.5029 1 40818 40818 7.2892 7.2892 1 179790000 + 26019 22121 17531 17872 30807 30807 0.10084111724984268 KAPLQQCAE 9 Unmodified _KAPLQQCAE_ 0 0 0 ENST00000477409.1_1_2:97001567-97024936:+|nuORF;nc|ENSG00000121152|Q15003-2|NCAPH;ENSG00000121152|ENST00000240423|NCAPH ENST00000477409.1_1_2:97001567-97024936:+|nuORF ENST00000477409.1_1_2:97001567-97024936:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2500610351562 2 494.250034 986.485516 1.2207 0.00060331 -1.1203 -0.00055369 0.1004 4.9625E-05 494.2492245377586 66.437 0.43546 66.446 66.146 66.582 0.0095596 41 21 3 0 0 0 0.56862 1 36435 36435 3.2813 0.97858 1 4191200 26020 3569 17532 17873 30808 30808 -0.008267628426096962 KAPPITPPFTP 11 Unmodified _KAPPITPPFTP_ 0 0 0 REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2258605957031 3 389.225375 1164.6543 0.17795 6.9265E-05 -0.1474 -5.7373E-05 0.030552 1.1892E-05 389.2252315564635 48.78 0.31455 48.736 48.573 48.887 -0.04369 42 15 3 0 0 0 0.66428 1 26286 26286 3.8459 0.25885 1 20009000 + 26021 23676 17533 17874 30809 30809 0.07855462062548213 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2989196777344 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 0.96098 1 0.96098 0.46098 1.461 0 0 0 0 0.94337 1 465 465 0.094841 0.094841 1 26022 12385 17534 17875 30810 30810 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2969055175781 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 2.4548 1 2.4548 1.9548 2.9548 0 0 0 0 0.94337 1 1192 1192 0.094841 0.094841 1 26023 12385 17534 17875 30811 30811 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.296630859375 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 11.488 1 11.488 10.988 11.988 0 0 0 0 0.94337 1 5448 5448 0.094841 0.094841 1 26024 12385 17534 17875 30812 30812 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2973022460938 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 1.0477 1 0.97442 0.47442 1.4744 -0.073289 0 0 0 0.94337 1 525 525 0.094841 0.094841 1 26025 12385 17534 17875 30813 30813 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2977905273438 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 2.0767 1 2.0047 1.5047 2.5047 -0.072029 0 0 0 0.94337 1 1035 1035 0.094841 0.094841 1 26026 12385 17534 17875 30814 30814 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2983703613281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 3.5204 1 3.4484 2.9484 3.9484 -0.072029 0 0 0 0.94337 1 1735 1735 0.094841 0.094841 1 26027 12385 17534 17875 30815 30815 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2967224121094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 5.3444 1 5.2669 4.7669 5.7669 -0.07749 0 0 0 0.94337 1 2640 2640 0.094841 0.094841 1 26028 12385 17534 17875 30816 30816 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2967224121094 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 1.8137 1 1.7967 1.2967 2.2967 -0.017019 0 0 0 0.94337 1 930 930 0.094841 0.094841 1 26029 12385 17534 17875 30817 30817 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2976379394531 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 2.9673 1 2.955 2.455 3.455 -0.012334 0 0 0 0.94337 1 1504 1504 0.094841 0.094841 1 26030 12385 17534 17875 30818 30818 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2975463867188 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 4.3164 1 4.3101 3.8101 4.8101 -0.0062971 0 0 0 0.94337 1 2186 2186 0.094841 0.094841 1 26031 12385 17534 17875 30819 30819 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2972717285156 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 7.7057 1 7.7209 7.2209 8.2209 0.015238 0 0 0 0.94337 1 3843 3843 0.094841 0.094841 1 26032 12385 17534 17875 30820 30820 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2968139648438 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 11.723 1 11.736 11.236 12.236 0.012355 0 0 0 0.94337 1 5785 5785 0.094841 0.094841 1 26033 12385 17534 17875 30821 30821 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2981262207031 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 107.25 1 101.07 100.57 101.57 -6.1757 0 0 0 0.94337 1 71745 71745 0.094841 0.094841 1 26034 12385 17534 17875 30822 30822 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2977905273438 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 108.03 1 101.85 101.35 102.35 -6.1757 0 0 0 0.94337 1 72215 72215 0.094841 0.094841 1 26035 12385 17534 17875 30823 30823 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2980651855469 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 108.64 1 102.47 101.97 102.97 -6.1757 0 0 0 0.94337 1 72601 72601 0.094841 0.094841 1 26036 12385 17534 17875 30824 30824 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2977294921875 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 109.05 1 102.87 102.37 103.37 -6.1757 0 0 0 0.94337 1 72851 72851 0.094841 0.094841 1 26037 12385 17534 17875 30825 30825 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2977905273438 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 109.23 1 103.05 102.55 103.55 -6.1757 0 0 0 0.94337 1 72958 72958 0.094841 0.094841 1 26038 12385 17534 17875 30826 30826 0.22417277055819795 KAQILKRRLVP 11 Unmodified _KAQILKRRLVP_ 0 0 0 ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF ENST00000372583.5_1_1:42049420-42049822:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2981567382812 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 109.41 1 103.24 102.74 103.74 -6.1757 0 0 0 0.94337 1 73072 73072 0.094841 0.094841 1 26039 12385 17534 17875 30827 30827 0.22417277055819795 KAQTPEGH 8 Unmodified _KAQTPEGH_ 0 0 0 nc|ENSG00000185339|P20062-2|TCN2;ENSG00000185339|ENST00000215838|TCN2 nc|ENSG00000185339|P20062-2|TCN2 nc|ENSG00000185339|P20062-2|TCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2201538085938 2 434.219591 866.42463 NaN NaN NaN NaN NaN NaN NaN 19.597 1 19.626 19.126 20.126 0.028357 0 0 0 0.97444 1 9890 9890 2.5775 1.8871 1 26040 9363 17535 17876 30828 30828 -0.013925318305155088 KARICKPLF 9 Unmodified _KARICKPLF_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3283081054688 2 538.325879 1074.63721 4.1071 0.0022109 0.9711 0.00052277 5.0782 0.0027337 538.3262536109119 98.772 0.28319 98.744 98.637 98.92 -0.028282 18 9 3 0 0 0 0.61256 1 54881 54881 0.6015 0 1 2695800 + 26041 17964 17536 17877 30829 30829 0.10287262975771228 KARQKKIPLLV 11 Unmodified _KARQKKIPLLV_ 0 0 0 REV__nc|ENSG00000143469|Q8NB59-2|SYT14 REV__nc|ENSG00000143469|Q8NB59-2|SYT14 MSMS AL20221201_MKP_PDAC_01 4 647.3680419921875 2 647.440089 1292.86563 NaN NaN NaN NaN NaN NaN NaN 104.38 1 98.207 97.707 98.707 -6.1757 0 0 0 0.94301 1 69909 69909 0.35063 0 1 + 26042 20643 17537 17878 30830 30830 0.23090758824309887 KARRRPRPWL 10 Unmodified _KARRRPRPWL_ 0 0 0 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.9175415039062 2 668.415272 1334.81599 1.2902 0.00086236 0.58105 0.00038838 1.8712 0.0012507 668.4154165193775 105.63 0.40265 99.459 99.324 99.727 -6.1757 81 36 3 0 0 0 0.72247 2 70731 70731;70836 0.40072 0.093686 1 14740000 26043 2189 17538 17879 30831;30832 30831 0.16197488658895054 KASLRELAL 9 Unmodified _KASLRELAL_ 0 0 0 ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF ENSG00000023191|ENST00000354420|RNH1 ENSG00000023191|ENST00000354420|RNH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8124084472656 2 500.811116 999.60768 -0.2879 -0.00014418 0.3386 0.00016957 0.050697 2.539E-05 500.8115393679292 41.333 0.24257 41.03 40.929 41.171 -0.30304 26 11 3 0 0 0 0.013609 1 21893 21893 70.332 3.8753 1 5334500 26044 537 17539 17880 30833 30833 0.10786022231263814 KASLRELAL 9 Unmodified _KASLRELAL_ 0 0 0 ENSG00000023191|ENST00000354420|RNH1;ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF ENSG00000023191|ENST00000354420|RNH1 ENSG00000023191|ENST00000354420|RNH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8118896484375 2 500.811116 999.60768 0.58387 0.00029241 0.5579 0.0002794 1.1418 0.00057181 500.8113220999737 45.431 0.39306 40.476 40.32 40.713 -4.9549 40 26 2 0 0 0 0.076472 1 27883 27883 38.615 2.4877 1 16371000 26045 537 17539 17880 30834 30834 0.10786022231263814 KASPAHVR 8 Unmodified _KASPAHVR_ 0 0 0 ENST00000572585.5_1_17:909322-915797:-|nuORF ENST00000572585.5_1_17:909322-915797:-|nuORF ENST00000572585.5_1_17:909322-915797:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2548828125 2 433.253769 864.492984 NaN NaN NaN NaN NaN NaN NaN 51.114 1 45.465 44.965 45.965 -5.649 0 0 0 0.9559 1 32138 32138 9.3831 0.035688 1 26046 15493 17540 17881 30835 30835 0.05531757539984028 KASQTGFVVL 10 Unmodified _KASQTGFVVL_ 0 0 0 ENSG00000133048|ENST00000255409|CHI3L1 ENSG00000133048|ENST00000255409|CHI3L1 ENSG00000133048|ENST00000255409|CHI3L1 MSMS AL20221201_MKP_PDAC_01 4 525.3038940429688 2 525.303124 1048.5917 NaN NaN NaN NaN NaN NaN NaN 104.5 1 98.325 97.825 98.825 -6.1757 0 0 0 0.99248 1 69979 69979 1.4819 0.28856 1 26047 4481 17541 17882 30836 30836 0.06934315994385543 KASWETVHM 9 Unmodified _KASWETVHM_ 0 0 0 ENSG00000154114|ENST00000683345|TBCEL ENSG00000154114|ENST00000683345|TBCEL ENSG00000154114|ENST00000683345|TBCEL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.1900634765625 3 363.511298 1087.51206 1.2371 0.00044968 -1.0785 -0.00039205 0.15855 5.7636E-05 363.5109271802092 17.929 0.23246 15.343 15.26 15.492 -2.5866 25 15 2 0 0 0 0.19758 1 9489 9489 8.9762 7.3236 1 2314700 26048 6296 17542 17883 30837 30837 -0.028190739512638174 KATKRDLCR 9 Unmodified _KATKRDLCR_ 0 0 0 ENST00000538420.5_1_12:6675468-6675985:-|nuORF ENST00000538420.5_1_12:6675468-6675985:-|nuORF ENST00000538420.5_1_12:6675468-6675985:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7200012207031 3 364.209842 1089.6077 -0.29229 -0.00010645 -0.38737 -0.00014108 -0.67965 -0.00024754 364.20982276100904 36.454 0.16581 36.476 36.349 36.515 0.021545 12 7 2 0 0 0 0.21822 1 19299 19299 2.4985 0 1 1837700 26049 15005 17543 17884 30838 30838 0.06647698959636728 KATNVVMNY 9 Oxidation (M) _KATNVVM(Oxidation (M))NY_ KATNVVM(1)NY KATNVVM(63)NY 0 0 1 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2642211914062 2 528.263142 1054.51173 0.52864 0.00027926 1.1726 0.00061946 1.7013 0.00089872 528.2639467241929 26.574 0.20874 23.623 23.56 23.769 -2.9511 12 10 2 0 0 0 0.020973 1 14670 14670 62.573 31.936 1 3386400 26050 2954 17544 17885 30839 30839 509 -0.013344936711291666 KATNVVMNY 9 Unmodified _KATNVVMNY_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MSMS AL20221201_MKP_PDAC_01 4 520.2660522460938 2 520.265684 1038.51682 NaN NaN NaN NaN NaN NaN NaN 37.462 1 33.178 32.678 33.678 -4.2835 0 0 0 0.027645 1 21989 21989 69.105 36.319 1 26051 2954 17544 17886 30840 30840 -0.0009018980849759828 KAVFGFIWSP 10 Unmodified _KAVFGFIWSP_ 0 0 0 REV__ENST00000394072.7_1_17:38633842-38637100:-|nuORF REV__ENST00000394072.7_1_17:38633842-38637100:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5480041503906 3 384.546449 1150.61752 NaN NaN NaN NaN NaN NaN NaN 16.953 1 16.954 16.454 17.454 0.0010548 0 0 0 0.99248 1 8394 8394 0.62683 0.12087 1 + 26052 19808 17545 17887 30841 30841 0.04823210236668274 KAVQPHISP 9 Unmodified _KAVQPHISP_ 0 0 0 TBCD-FOXK2|1|fusion;ENST00000570585.1_1_17:80478172-80529779:+|nuORF;nc|ENSG00000141568|Q01167-2|FOXK2;ENSG00000141568|ENST00000335255|FOXK2;ENST00000527313.6_1_17:80477872-80529633:+|nuORF;nc|ENSG00000141568|Q01167-3|FOXK2 TBCD-FOXK2|1|fusion;nc|ENSG00000141568|Q01167-2|FOXK2 TBCD-FOXK2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7831420898438 2 488.782359 975.550165 0.50215 0.00024544 -1.0517 -0.00051403 -0.5495 -0.00026859 488.78231844801144 31.072 0.44547 30.969 30.691 31.136 -0.10269 32 17 2 0 0 0 0.06187 2 16062 16062;16161 42.095 0 1 3746900 26053 30184;5354 17546 17888 30842;30843 30842 0.06141180025713311 KAVSLFLCY 9 Carbamidomethyl (C) _KAVSLFLC(Carbamidomethyl (C))Y_ KAVSLFLC(1)Y KAVSLFLC(54)Y 0 1 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.794677734375 2 550.794078 1099.5736 0.40619 0.00022373 0.19898 0.0001096 0.60517 0.00033333 550.7941049711483 68.007 0.58319 68.032 67.794 68.378 0.025146 53 28 2 0 0 0 0.032796 2 37280 37280;37388 53.833 36.89 1 131830000 26054 3962 17547 17889 30844;30845 30844 399 0.027798577480098174 KAVSLFLCY 9 Carbamidomethyl (C) _KAVSLFLC(Carbamidomethyl (C))Y_ KAVSLFLC(1)Y KAVSLFLC(60)Y 0 1 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7954711914062 2 550.794078 1099.5736 0.26285 0.00014477 0.73764 0.00040629 1.0005 0.00055106 550.7945539514097 76.95 1.0869 70.774 70.45 71.537 -6.1757 96 60 2 0 0 0 0.023481 4 50227 50227;50339;50466;50598 60.074 40.817 1 34745000 26055 3962 17547 17889 30846;30847;30848;30849 30846 399 0.027798577480098174 KAVSLFLCY 9 Carbamidomethyl (C) _KAVSLFLC(Carbamidomethyl (C))Y_ KAVSLFLC(1)Y KAVSLFLC(44)Y 0 1 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7953491210938 2 550.794078 1099.5736 0.95362 0.00052525 0.56607 0.00031179 1.5197 0.00083703 550.7945142578105 78.913 0.52025 72.737 72.647 73.167 -6.1757 41 28 2 0 0 0 0.05483 1 51741 51741 43.772 24.515 1 9293800 26056 3962 17547 17889 30850 30850 399 0.027798577480098174 KAVSLFLCY 9 Carbamidomethyl (C) _KAVSLFLC(Carbamidomethyl (C))Y_ KAVSLFLC(1)Y KAVSLFLC(44)Y 0 1 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7959594726562 2 550.794078 1099.5736 0.6889 0.00037944 1.2114 0.00066722 1.9003 0.0010467 550.7945107622367 80.426 0.64232 74.25 74.037 74.679 -6.1757 51 35 2 0 0 0 0.05483 1 52932 52932 43.772 16.889 1 41697000 26057 3962 17547 17889 30851 30851 399 0.027798577480098174 KAVSLFLCY 9 Carbamidomethyl (C) _KAVSLFLC(Carbamidomethyl (C))Y_ KAVSLFLC(1)Y KAVSLFLC(82)Y 0 1 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7944946289062 2 550.794078 1099.5736 0.80836 0.00044524 -0.4518 -0.00024885 0.35655 0.00019639 550.7939617736295 83.234 3.0954 77.059 75.761 78.857 -6.1757 479 172 6 0 0 0 0.009483 9 54592 54191;54321;54458;54592;54728;54856;54987;55113;55240 81.89 57.191 1 379430000 26058 3962 17547 17889 30852;30853;30854;30855;30856;30857;30858;30859;30860 30855 399 0.027798577480098174 KAWELYELI 9 Unmodified _KAWELYELI_ 0 0 0 REV__ENST00000478573.6_1_1:227381485-227504745:-|nuORF REV__ENST00000478573.6_1_1:227381485-227504745:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.822021484375 2 582.818607 1163.62266 0.41643 0.00024271 3.1178 0.0018171 3.5342 0.0020598 582.8214484413076 56.432 0.48379 56.363 56.155 56.638 -0.068741 36 24 2 0 0 0 0.10734 1 30680 30680 32.305 3.2239 1 9287800 + 26059 20668 17548 17890 30861 30861 0.04739469308628941 KAWGMQHRNP 10 Unmodified _KAWGMQHRNP_ 0 0 0 REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.80615234375 2 612.806374 1223.59819 -0.45991 -0.00028184 1.619 0.00099213 1.1591 0.00071029 612.8070056801216 78.231 0.19157 77.745 77.608 77.799 -0.48596 12 7 2 0 0 0 0.69377 1 42868 42868 3.5965 0 1 687910 + 26060 19697 17549 17891 30862 30862 -0.004660693258983883 KAWGMQHRNP 10 Unmodified _KAWGMQHRNP_ 0 0 0 REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF REV__ENST00000462279.5_1_5:60187964-60188273:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 612.806374 1223.59819 -0.45991 -0.00028184 1.619 0.00099213 1.1591 0.00071029 612.8070056801216 78.231 0.19157 77.745 77.608 77.799 -0.48596 0 0 NaN 3.5965 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 687910 + 26061 19697 17549 17891 -0.004660693258983883 KAYEQALQY 9 Unmodified _KAYEQALQY_ 0 0 0 nc|ENSG00000129514|P55317-2|FOXA1;ENSG00000129514|ENST00000250448|FOXA1 nc|ENSG00000129514|P55317-2|FOXA1 nc|ENSG00000129514|P55317-2|FOXA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.78564453125 2 557.282389 1112.55022 -0.26458 -0.00014744 1.8407 0.0010258 1.5761 0.00087833 557.78525096425 34.008 0.074406 34.008 33.97 34.044 0 5 3 2 0 0 0 0.055398 1 17895 17895 52.268 22.044 1 4319600 26062 4144 17550 17892 30863 30863 -0.001548647649542545 KAYKRREY 8 Unmodified _KAYKRREY_ 0 0 0 nc|ENSG00000121406|Q6P9A3-2|ZNF549;ENSG00000121406|ENST00000376233|ZNF549 nc|ENSG00000121406|Q6P9A3-2|ZNF549 nc|ENSG00000121406|Q6P9A3-2|ZNF549 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3137817382812 2 557.311815 1112.60908 NaN NaN NaN NaN NaN NaN NaN 95.613 1 95.245 94.745 95.745 -0.36814 0 0 0 0.97444 1 52222 52222 5.2307 0.90143 1 26063 3582 17551 17893 30864 30864 0.057276563200503006 KCAQIEAKF 9 Carbamidomethyl (C) _KC(Carbamidomethyl (C))AQIEAKF_ KC(1)AQIEAKF KC(120)AQIEAKF 0 1 0 ENST00000549988.5_1_12:76453547-76478450:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1 ENST00000549988.5_1_12:76453547-76478450:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7877807617188 2 547.786784 1093.55902 1.063 0.00058228 -0.82763 -0.00045336 0.23535 0.00012892 547.7864393942087 30.621 0.3415 27.124 26.936 27.277 -3.497 42 16 3 0 0 0 0.0048194 2 17226 17226;17338 117.76 70.012 1 79117000 26064 9540;15158 17552 17894 30865;30866 30865 883 0.015977855998698942 KCAQIEAKF 9 Carbamidomethyl (C) _KC(Carbamidomethyl (C))AQIEAKF_ KC(1)AQIEAKF KC(46)AQIEAKF 0 1 0 ENST00000549988.5_1_12:76453547-76478450:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1 ENST00000549988.5_1_12:76453547-76478450:-|nuORF;nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.527099609375 3 365.526948 1093.55902 1.7749 0.00064878 -1.1088 -0.0004053 0.6661 0.00024348 365.52666766802867 30.623 0.44421 27.126 26.877 27.321 -3.497 56 21 3 0 0 0 0.047714 1 17350 17350 45.74 27.367 1 127360000 26065 9540;15158 17552 17894 30867 30867 883 0.015977855998698942 KCAVKATK 8 Unmodified _KCAVKATK_ 0 0 0 REV__nc|ENSG00000148773|P46013-2|MKI67 REV__nc|ENSG00000148773|P46013-2|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7558288574219 2 424.754756 847.494958 1.5054 0.00063944 1.4404 0.00061183 2.9459 0.0012513 424.7552140273587 33.693 0.49659 29.708 29.469 29.965 -3.9853 66 27 3 0 0 0 0.80722 1 19243 19243 2.3027 1.5091 1 28820000 + 26066 20968 17553 17895 30868 30868 0.06511050233586957 KCDYPKLGSHI 11 Unmodified _KCDYPKLGSHI_ 0 0 0 REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540 REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8231201171875 2 630.823898 1259.63324 0.059168 3.7325E-05 -0.29538 -0.00018633 -0.23621 -0.00014901 630.8232057033948 102.04 0.066299 101.92 101.89 101.96 -0.11613 6 2 3 0 0 0 0.71341 1 55692 55692 2.9952 0 1 2287400 + 26067 22606 17554 17896 30869 30869 0.013811286913778531 KCEDIDECSTI 11 Unmodified _KCEDIDECSTI_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.1781921386719 3 419.177544 1254.5108 1.2322 0.00051652 -0.88529 -0.00037109 0.34693 0.00014543 419.17714343320444 38.127 0.52935 33.758 33.516 34.045 -4.3689 67 31 3 0 0 0 0.71341 2 22446 22446;22578 1.2148 0.51716 1 36900000 26068 7437 17555 17897 30870;30871 30870 -0.10627120892991115 KCFLHADACQ 10 Unmodified _KCFLHADACQ_ 0 0 0 REV__nc|ENSG00000011275|Q9NWF9-3|RNF216 REV__nc|ENSG00000011275|Q9NWF9-3|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1721496582031 3 379.172288 1134.49503 0.21272 8.0659E-05 -1.5749 -0.00059716 -1.3622 -0.0005165 379.17182158089776 78.868 0.62477 78.382 77.971 78.596 -0.48596 35 25 2 0 0 0 0.71276 1 43309 43309 0.62683 0 1 1189200 + 26069 17054 17556 17898 30872 30872 -0.06683317828742474 KCGIKTFLTKL 11 Unmodified _KCGIKTFLTKL_ 0 0 0 REV__ENST00000469033.1_1_4:40776294-40778281:+|nuORF REV__ENST00000469033.1_1_4:40776294-40778281:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.9212646484375 3 417.921298 1250.74206 0.54263 0.00022678 -1.4028 -0.00058625 -0.86014 -0.00035947 417.9207189682167 40.388 0.56263 40.091 39.882 40.445 -0.29716 48 26 2 0 0 0 0.71938 1 21361 21361 2.4348 1.22 1 1645300 + 26070 23091 17557 17899 30873 30873 0.12672339661639853 KCGRYVLS 8 Unmodified _KCGRYVLS_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2496948242188 2 463.249837 924.485122 0.63178 0.00029267 -0.043762 -2.0273E-05 0.58802 0.0002724 463.2499217829343 28.38 0.41645 25.232 25.041 25.458 -3.1482 35 21 2 0 0 0 0.40035 1 15789 15789 44.407 4.4497 1 16106000 26071 4368 17558 17900 30874 30874 0.019858622282072247 KCILLLLL 8 Unmodified _KCILLLLL_ 0 0 0 REV__ENSG00000070886|ENST00000166244|EPHA8 REV__ENSG00000070886|ENST00000166244|EPHA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.8173522949219 2 464.816824 927.619096 0.24558 0.00011415 -1.0274 -0.00047754 -0.78179 -0.00036339 464.81712251840565 100.92 0.13442 100.88 100.79 100.92 -0.04216 12 4 4 0 0 0 0.65867 1 56071 56071 20.871 6.2895 1 2295500 + 26072 17485 17559 17901 30875 30875 0.15239128001076097 KCKCWPGF 8 Unmodified _KCKCWPGF_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2684936523438 2 484.727684 967.440814 0.53182 0.00025779 2.3769 0.0011522 2.9088 0.00141 484.7290386484601 57.047 0.23046 57.047 56.947 57.177 0 11 9 2 0 0 0 8.7369 1 31804 31804 6.3541 0.59368 1 778840 26073 7792 17560 17902 30876 30876 -0.044208651896383344 KCKKLALAL 9 Unmodified _KCKKLALAL_ 0 0 0 REV__ENSG00000189077|ENST00000493111|TMEM120A REV__ENSG00000189077|ENST00000493111|TMEM120A MSMS AL20221201_MKP_PDAC_01 4 494.3221130371094 2 494.322805 986.631058 NaN NaN NaN NaN NaN NaN NaN 105.98 1 99.808 99.308 100.31 -6.1757 0 0 0 0.8622 1 70971 70971 0 0 1 + 26074 23759 17561 17903 30877 30877 0.13720744744216518 KCKLKKRVERQ 11 Unmodified _KCKLKKRVERQ_ 0 0 0 REV__GALNT5|p.L783V|1|0.28|ENSG00000136542|chr2:157300907-157300907|C/G|missense_variant REV__GALNT5|p.L783V|1|0.28|ENSG00000136542|chr2:157300907-157300907|C/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.6255798339844 3 472.625767 1414.85547 NaN NaN NaN NaN NaN NaN NaN 38.156 1 38.173 37.673 38.673 0.01704 0 0 0 0.94337 1 20283 20283 0.094841 0 1 + 26075 29348 17562 17904 30878 30878 0.16463827827419664 KCLKNRIFYP 10 Unmodified _KCLKNRIFYP_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.9096374511719 3 427.909392 1280.70635 NaN NaN NaN NaN NaN NaN NaN 15.079 1 15.085 14.585 15.585 0.0057774 0 0 0 0.99897 1 7501 7501 0.77653 0.27058 1 + 26076 22382 17563 17905 30879 30879 0.07722302204660991 KCPHFFQYF 9 Unmodified _KCPHFFQYF_ 0 0 0 REV__ENSG00000047597|ENST00000378616|XK REV__ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7844848632812 2 608.784044 1215.55354 NaN NaN NaN NaN NaN NaN NaN 84.453 1 83.953 83.453 84.453 -0.49961 0 0 0 0.84369 1 46215 46215 2.3027 0 1 + 26077 17229 17564 17906 30880 30880 -0.04561893191953459 KCQEIEIYL 9 Carbamidomethyl (C) _KC(Carbamidomethyl (C))QEIEIYL_ KC(1)QEIEIYL KC(89)QEIEIYL 0 1 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3042602539062 2 598.305007 1194.59546 0.16506 9.8755E-05 -0.39675 -0.00023738 -0.23169 -0.00013862 598.3046101147912 66.302 0.39342 60.127 59.939 60.332 -6.1757 37 22 2 0 0 0 0.0086722 2 43075 43075;43200 88.954 40.608 1 19863000 26078 8304 17565 17907 30881;30882 30881 797 0.0059461770592861285 KCQEKSKKSYM 11 Unmodified _KCQEKSKKSYM_ 0 0 0 ENST00000341191.10_1_19:11834145-11836023:-|nuORF ENST00000341191.10_1_19:11834145-11836023:-|nuORF ENST00000341191.10_1_19:11834145-11836023:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 680.3399658203125 2 680.341597 1358.66864 -0.72401 -0.00049258 -1.2695 -0.00086368 -1.9935 -0.0013563 680.3407040881436 27.2 0.17787 27.2 27.075 27.253 0 18 8 3 0 0 0 0.69316 1 13982 13982 4.897 0 1 3890800 26079 11965 17566 17908 30883 30883 0.0036542315688166127 KCQHFKQHRQY 11 Unmodified _KCQHFKQHRQY_ 0 0 0 nc|ENSG00000176659|Q8N268|LINC02910 nc|ENSG00000176659|Q8N268|LINC02910 nc|ENSG00000176659|Q8N268|LINC02910 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.9194946289062 3 501.585971 1501.73608 -0.8663 -0.00043452 0.83502 0.00041883 -0.031283 -1.5691E-05 501.58644004334116 18.315 0.14414 18.338 18.281 18.425 0.023106 86 28 4 0 0 0 0.74203 1 9153 9153 0.08335 0 1 2350700 26080 16400 17567 17909 30884 30884 0.005286342027147839 KCSHLSRY 8 Unmodified _KCSHLSRY_ 0 0 0 REV__ENST00000296721.8_1_5:148719739-148719907:+|nuORF REV__ENST00000296721.8_1_5:148719739-148719907:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.4907836914062 1 993.493461 992.486184 0.055672 5.531E-05 -4.2634 -0.0042357 -4.2077 -0.0041804 993.4894398077797 59.081 0.18858 59.081 59.004 59.192 0 12 7 2 0 0 0 0.79783 1 32902 32902 7.9102 2.1497 1 683780 + 26081 25275 17568 17910 30885 30885 -0.010359234029010622 KCVDDQSDYYS 11 Unmodified _KCVDDQSDYYS_ 0 0 0 REV__ENST00000598554.1_1_19:42027644-42028339:-|nuORF REV__ENST00000598554.1_1_19:42027644-42028339:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.7618408203125 2 661.7639 1321.51325 -0.40752 -0.00026968 -3.08 -0.0020382 -3.4875 -0.0023079 661.761549856823 35.351 0.23063 35.351 35.285 35.515 0 14 11 2 0 0 0 0.62338 1 18705 18705 10.151 0.076642 1 3627600 + 26082 19025 17569 17911 30886 30886 -0.13464949163676465 KCWPVFERY 9 Unmodified _KCWPVFERY_ 0 0 0 REV__ENST00000550071.1_1_12:56661074-56663089:+|nuORF REV__ENST00000550071.1_1_12:56661074-56663089:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8705444335938 3 409.870826 1226.59065 NaN NaN NaN NaN NaN NaN NaN 42.5 1 42.193 41.693 42.693 -0.30682 0 0 0 0.6557 1 22579 22579 7.1017 1.699 1 + 26083 20070 17570 17912 30887 30887 -0.013582216461827556 KCYLCDWLF 9 Unmodified _KCYLCDWLF_ 0 0 0 L1MB8_dup13307|chr15:58862252-58862776:+|1.077679791469789|0.2197036870405345|2.29|176.0|30|2|anti-sense L1MB8_dup13307|chr15:58862252-58862776:+|1.077679791469789|0.2197036870405345|2.29|176.0|30|2|anti-sense L1MB8_dup13307|chr15:58862252-58862776:+|1.077679791469789|0.2197036870405345|2.29|176.0|30|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5170593261719 3 397.517284 1189.53002 -0.10113 -4.0203E-05 1.028 0.00040863 0.92682 0.00036843 397.5175327496837 33.496 0.31057 33.525 33.338 33.648 0.028934 18 13 2 0 0 0 0.58466 1 17614 17614 1.1933 0 1 2504600 26084 15944 17571 17913 30888 30888 -0.057160750207913225 KDAGLSIFNN 10 Unmodified _KDAGLSIFNN_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3007202148438 2 539.780013 1077.54547 -0.36874 -0.00019904 -0.28907 -0.00015604 -0.65781 -0.00035507 539.7798685864084 41.116 0.25665 41.116 41.024 41.281 0 20 12 2 0 0 0 0.23162 1 22159 22159 12.241 2.8575 1 2690800 26085 2028 17572 17914 30889 30889 0.009802510922781948 KDAQFYCEL 9 Unmodified _KDAQFYCEL_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENSG00000076706|ENST00000264036|MCAM nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7515258789062 2 558.755149 1115.49575 NaN NaN NaN NaN NaN NaN NaN 76.528 1 76.048 75.548 76.548 -0.47945 0 0 0 0.53226 1 41893 41893 14.838 2.5976 1 26086 1192 17573 17915 30890 30890 -0.057381999080462265 KDDCPNQWL 9 Unmodified _KDDCPNQWL_ 0 0 0 REV__ENSG00000138653|ENST00000264363|NDST4;REV__ENSG00000166507|ENST00000309979|NDST2;REV__nc|ENSG00000164100|O95803-3|NDST3 REV__ENSG00000166507|ENST00000309979|NDST2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7510375976562 2 559.750398 1117.48624 0.33867 0.00018957 0.94051 0.00052645 1.2792 0.00071602 559.7508372691303 84.77 0.78881 78.595 78.262 79.05 -6.1757 177 46 5 0 0 0 0.43463 1 55890 55890 10.824 1.4408 1 137720000 + 26087 22128;21868;20351 17574 17916 30891 30891 -0.06779968193563946 KDDDEHSLS 9 Unmodified _KDDDEHSLS_ 0 0 0 REV__ENST00000473554.5_1_2:219337952-219344428:-|nuORF REV__ENST00000473554.5_1_2:219337952-219344428:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2989501953125 2 523.225268 1044.43598 1.0555 0.00055224 -1.397 -0.00073097 -0.34159 -0.00017873 523.2246148071209 64.886 0.32225 58.711 58.525 58.847 -6.1757 32 17 2 0 0 0 0.18882 1 42144 42144 15.847 3.3156 1 13976000 + 26088 20110 17575 17917 30892 30892 -0.08445799317723868 KDDEENYLD 9 Unmodified _KDDEENYLD_ 0 0 0 nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;ENST00000307714.12_1_1:32479575-32503673:+|nuORF nc|ENSG00000121774|Q07666-3|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7345581054688 2 570.738208 1139.46186 -0.39772 -0.000227 -2.975 -0.0016979 -3.3727 -0.0019249 570.737218429677 27.518 0.52524 27.518 27.196 27.721 0 50 25 3 0 0 0 0.13231 1 14081 14081 29.841 0 1 6451700 26089 3599 17576 17918 30893 30893 -0.10228949866086623 KDDFWKMVW 9 Unmodified _KDDFWKMVW_ 0 0 0 nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB nc|ENSG00000127329|P23467|PTPRB nc|ENSG00000127329|P23467|PTPRB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.803466796875 2 627.802434 1253.59032 NaN NaN NaN NaN NaN NaN NaN 93.175 1 93.175 92.675 93.675 0 0 0 0 0.85737 1 51516 51516 0.6015 0 1 26090 3998 17577 17919 30894 30894 -0.02633641366037409 KDEDHERE 8 Unmodified _KDEDHERE_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1583557128906 3 353.156348 1056.44722 NaN NaN NaN NaN NaN NaN NaN 80.562 1 80.562 80.062 81.062 0 0 0 0 0.97444 1 44731 44731 0.45834 0.18932 1 26091 5089 17578 17920 30895 30895 -0.07874977223559654 KDEMRQITF 9 Unmodified _KDEMRQITF_ 0 0 0 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2927856445312 2 584.294973 1166.57539 NaN NaN NaN NaN NaN NaN NaN 94.71 1 94.29 93.79 94.79 -0.42044 0 0 0 0.83049 1 51740 51740 3.9444 0.3479 1 + 26092 20878 17579 17921 30896 30896 -0.0012313323404669063 KDEPEDDGYF 10 Unmodified _KDEPEDDGYF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8569030761719 3 405.499781 1213.47751 -0.039142 -1.5872E-05 3.1789 0.0012891 3.1398 0.0012732 405.5009816738774 52.539 0.30013 52.539 52.402 52.702 0 18 13 3 0 0 0 0.23993 1 29006 29006 1.7423 0.54893 1 1753000 26093 10191 17580 17922 30897 30897 -0.12068663349054987 KDERNCQFCH 10 Unmodified _KDERNCQFCH_ 0 0 0 ENSG00000155890|ENST00000286349|TRIM42;nc|ENSG00000155890|Q8IWZ5-2|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.1824035644531 3 427.181735 1278.52337 1.2 0.00051262 0.93238 0.0003983 2.1324 0.00091092 427.18190088808126 92.244 1.0992 86.069 85.351 86.45 -6.1757 229 64 5 0 0 0 0.71276 1 60797 60797 0.62683 0.12087 1 45844000 26094 6414 17581 17923 30898 30898 -0.10474619919432371 KDEWLQQQQ 9 Unmodified _KDEWLQQQQ_ 0 0 0 ENSG00000164746|ENST00000348904|C7orf57;nc|nan|Q8NEG2-2|C7orf57 ENSG00000164746|ENST00000348904|C7orf57 ENSG00000164746|ENST00000348904|C7orf57 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7943115234375 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.1773 1 50917 50917 25.399 8.2864 1 114760000 26095 7239 17582 17924 30899 30899 -0.019972653673448804 KDFAAVLQDF 10 Unmodified _KDFAAVLQDF_ 0 0 0 REV__nc|ENSG00000106123|O15197-2|EPHB6 REV__nc|ENSG00000106123|O15197-2|EPHB6 MSMS AL20221201_MKP_PDAC_01 4 577.299072265625 2 577.298039 1152.58152 NaN NaN NaN NaN NaN NaN NaN 53.666 1 47.862 47.362 48.362 -5.8042 0 0 0 0.57227 1 33948 33948 22.736 4.5899 1 + 26096 18492 17583 17925 30900 30900 0.011337082691397882 KDFKFLSEL 9 Unmodified _KDFKFLSEL_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2098693847656 3 376.209613 1125.60701 -0.51979 -0.00019555 1.0623 0.00039966 0.54254 0.00020411 376.2100970930922 33.266 0.19854 33.266 33.166 33.365 0 16 9 2 0 0 0 0.54444 1 17433 17433 2.7352 0.23671 1 2127200 + 26097 18935 17584 17926 30901 30901 0.04923182791549152 KDFKFLSEL 9 Unmodified _KDFKFLSEL_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 376.209613 1125.60701 -0.51979 -0.00019555 1.0623 0.00039966 0.54254 0.00020411 376.2100970930922 33.266 0.19854 33.266 33.166 33.365 0 0.033554 0.00057563 NaN 2.7352 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2127200 + 26098 18935 17584 17926 0.04923182791549152 KDFKQCPQEC 10 Unmodified _KDFKQCPQEC_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.1835021972656 3 409.182853 1224.52673 0.73685 0.00030151 -3.8332 -0.0015685 -3.0963 -0.001267 409.18273088271246 18.003 0.31243 15.407 15.246 15.559 -2.5964 52 23 4 0 0 0 0.67459 1 9475 9475 3.0723 0.63748 1 3401900 26099 7828 17585 17927 30902 30902 -0.07655369865437933 KDFLNNLGPI 10 Unmodified _KDFLNNLGPI_ 0 0 0 REV__ENSG00000100991|ENST00000252015|TRPC4AP REV__ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5458984375 3 377.544996 1129.61316 0.73737 0.00027839 0.020138 7.6029E-06 0.75751 0.00028599 377.5450255590121 24.175 0.44316 21.348 21.091 21.534 -2.8273 80 24 5 0 0 0 0.56675 1 13063 13063 12.873 0.69786 1 124540000 + 26100 18122 17586 17928 30903 30903 0.05353701023091162 KDFMSKTPKAM 11 Unmodified _KDFMSKTPKAM_ 0 0 0 nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|62|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|163|3|sense nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.5554504394531 3 428.554398 1282.64136 1.3183 0.00056498 0.97923 0.00041965 2.2976 0.00098463 428.5542430118982 20.928 0.63554 18.235 17.941 18.577 -2.693 57 38 2 0 0 0 0.69708 1 11119 11119 2.084 0.15646 1 10668000 26101 16660 17587 17929 30904 30904 0.011349396165087455 KDGALRTC 8 Unmodified _KDGALRTC_ 0 0 0 REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF REV__ENST00000467388.1_1_2:216203501-216211697:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.2230834960938 2 432.22382 862.433086 NaN NaN NaN NaN NaN NaN NaN 47.073 1 41.993 41.493 42.493 -5.0805 0 0 0 0.92452 1 29177 29177 15.847 2.3393 1 + 26102 20325 17588 17930 30905 30905 -0.0036330118556406887 KDGCFIGPHY 10 Unmodified _KDGCFIGPHY_ 0 0 0 REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5114440917969 3 379.511298 1135.51206 0.53408 0.00020269 0.43606 0.00016549 0.97014 0.00036818 379.51154177239425 30.537 0.48442 30.435 30.233 30.717 -0.10269 46 18 5 0 0 0 0.69385 1 15822 15822 3.5871 0.5148 1 17018000 + 26103 27149 17589 17931 30906 30906 -0.05027073951282546 KDGILQLFSCM 11 Unmodified _KDGILQLFSCM_ 0 0 0 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.878662109375 3 418.878882 1253.61482 0.65187 0.00027306 -0.76652 -0.00032108 -0.11465 -4.8022E-05 418.87862204903513 62.498 0.26789 62.011 61.851 62.119 -0.48764 28 12 3 0 0 0 0.68282 1 34051 34051 5.8681 1.7515 1 5334900 + 26104 20816 17590 17932 30907 30907 -0.0018474927480838232 KDGILQLFSCM 11 Unmodified _KDGILQLFSCM_ 0 0 0 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 REV__nc|ENSG00000146192|Q7Z6J4-2|FGD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 418.878882 1253.61482 0.21101 8.8388E-05 -0.95506 -0.00040005 -0.74404 -0.00031166 418.87867120695546 62.067 0.17627 62.035 61.946 62.122 -0.032791 0.012038 -0.00017324 NaN 5.8681 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2014800 + 26105 20816 17590 17932 -0.0018474927480838232 KDGIQGAQLDL 11 Unmodified _KDGIQGAQLDL_ 0 0 0 nc|ENSG00000087884|Q9H7C9-3|AAMDC nc|ENSG00000087884|Q9H7C9-3|AAMDC nc|ENSG00000087884|Q9H7C9-3|AAMDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2628784179688 2 579.311677 1156.6088 0.51346 0.00029745 -0.78004 -0.00045189 -0.26658 -0.00015443 579.3110752518461 39.068 0.16496 39.068 38.97 39.135 0 11 7 2 0 0 0 0.28666 1 20927 20927 15.248 2.206 1 1112600 26106 16064 17591 17933 30908 30908 0.03676191809518059 KDHHDMLLE 9 Unmodified _KDHHDMLLE_ 0 0 0 nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000137474|Q13402-8|MYO7A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2173156738281 3 379.850091 1136.52844 0.071354 2.7104E-05 2.7942 0.0010614 2.8655 0.0010885 380.1852266402023 38.296 0.37288 38.313 38.13 38.503 0.01704 23 16 2 0 0 0 0.21819 1 20355 20355 1.0715 0.10919 1 1280900 26107 4935 17592 17934 30909 30909 -0.034359927851937755 KDIIHFFRH 9 Unmodified _KDIIHFFRH_ 0 0 0 nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11;ENST00000464884.1_1_3:155830239-155830734:-|nuORF nc|ENSG00000020922|P49959-2|MRE11 nc|ENSG00000020922|P49959-2|MRE11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8363037109375 2 606.835457 1211.65636 NaN NaN NaN NaN NaN NaN NaN 26.263 1 26.231 25.731 26.731 -0.031708 0 0 0 0.84737 1 13500 13500 1.8442 0.19162 1 26108 522 17593 17935 30910 30910 0.0589993559103732 KDITAEEEQEE 11 Unmodified _KDITAEEEQEE_ 0 0 0 nc|ENSG00000152782|Q8TE04-4|PANK1;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000152782|Q8TE04|PANK1 nc|ENSG00000152782|Q8TE04-4|PANK1 nc|ENSG00000152782|Q8TE04-4|PANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8641662597656 3 440.8649 1319.57287 NaN NaN NaN NaN NaN NaN NaN 27.34 1 27.34 26.84 27.84 0 0 0 0 0.82644 1 14082 14082 5.8681 2.2755 1 26109 16278 17594 17936 30911 30911 -0.07413354948630513 KDITHFLL 8 Unmodified _KDITHFLL_ 0 0 0 ENSG00000171984|ENST00000303142|SHLD1 ENSG00000171984|ENST00000303142|SHLD1 ENSG00000171984|ENST00000303142|SHLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7949829101562 2 493.78711 985.559667 0.77785 0.00038409 0.62881 0.0003105 1.4067 0.00069459 493.7872514045315 65.011 1.0438 58.835 58.45 59.494 -6.1757 175 58 4 0 0 0 0.5953 1 41967 41967 26.341 3.1929 1 487060000 26110 8169 17595 17937 30912 30912 0.06630948311226348 KDKEAKGEHI 10 Unmodified _KDKEAKGEHI_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MSMS AL20221201_MKP_PDAC_01 4 385.5415649414062 3 385.543655 1153.60914 NaN NaN NaN NaN NaN NaN NaN 23.486 1 20.659 20.159 21.159 -2.8273 0 0 0 0.55063 1 12715 12715 20.871 3.8226 1 26111 4736 17596 17938 30913 30913 0.03847611529386086 KDKFSFDL 8 Unmodified _KDKFSFDL_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2606506347656 2 500.260925 998.507297 0.42794 0.00021408 1.5111 0.00075593 1.939 0.00097002 500.2615825569271 64.363 0.28073 63.878 63.779 64.059 -0.48512 24 12 3 0 0 0 0.79669 1 35129 35129 8.5933 3.3626 1 1029100 26112 275 17597 17939 30914 30914 0.007983651776157785 KDKGLQKYF 9 Unmodified _KDKGLQKYF_ 0 0 0 nc|ENSG00000101298|O15079|SNPH;ENSG00000101298|ENST00000381867|SNPH nc|ENSG00000101298|O15079|SNPH nc|ENSG00000101298|O15079|SNPH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2139587402344 3 376.213358 1125.61824 -0.026004 -9.783E-06 0.91831 0.00034548 0.8923 0.0003357 376.2136671543296 55.448 1.0575 55.379 54.744 55.801 -0.068741 109 53 5 0 0 0 0.21052 1 30274 30274 2.086 0 1 21207000 26113 1942 17598 17940 30915 30915 0.060460048857066795 KDKHERAHL 9 Unmodified _KDKHERAHL_ 0 0 0 REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687 REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.822021484375 2 567.312346 1132.61014 1.4083 0.00079894 -3.1546 -0.0017897 -1.7464 -0.00099073 567.309824681173 94.389 0.61151 88.213 87.898 88.509 -6.1757 66 35 3 0 0 0 0.30202 1 62632 62632 17.113 0.96379 1 56011000 + 26114 20630 17599 17941 30916 30916 0.049138706889380046 KDKHLYHQQW 10 Unmodified _KDKHLYHQQW_ 0 0 0 REV__ENSG00000100991|ENST00000252015|TRPC4AP REV__ENSG00000100991|ENST00000252015|TRPC4AP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.8829956054688 2 691.851835 1381.68912 0.71016 0.00049133 -2.3923 -0.0016551 -1.6821 -0.0011638 692.3514664010121 58.597 0.15506 58.536 58.452 58.607 -0.060719 10 7 2 0 0 0 0.23745 1 31900 31900 5.7319 0 1 1452500 + 26115 18122 17600 17942 30917 30917 0.013540979231947858 KDKQLNEKI 9 Unmodified _KDKQLNEKI_ 0 0 0 ENST00000542359.5_1_11:63776517-63933244:-|nuORF;ENST00000538595.1_1_11:63916459-63933466:-|nuORF;ENST00000545464.5_1_11:63767582-63933466:-|nuORF;ENSG00000133315|ENST00000255681|MACROD1 ENST00000542359.5_1_11:63776517-63933244:-|nuORF ENST00000542359.5_1_11:63776517-63933244:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.783447265625 2 558.324588 1114.63462 0.1766 9.8599E-05 0.37755 0.0002108 0.55415 0.0003094 558.3247052343511 51.271 0.17973 51.217 51.107 51.286 -0.053871 10 8 2 0 0 0 0.19891 1 27682 27682 11.64 0.81637 1 1051500 26116 4505 17601 17943 30918 30918 0.08189086051788763 KDKQVKYFI 9 Unmodified _KDKQVKYFI_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.56298828125 3 390.229008 1167.66519 1.4897 0.00058131 1.711 0.0006677 3.2007 0.001249 390.56389095166236 91.922 0.38275 85.746 85.49 85.872 -6.1757 46 21 3 0 0 0 0.37804 1 60806 60806 8.7454 0.58988 1 13604000 26117 9411 17602 17944 30919 30919 0.08806864436837714 KDKRAEKFIRR 11 Unmodified _KDKRAEKFIRR_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.472412109375 4 362.471755 1445.85791 0.82919 0.00030056 0.73024 0.00026469 1.5594 0.00056525 362.7228069447292 14.543 0.14214 12.041 11.959 12.101 -2.5029 55 23 3 0 0 0 0.70147 1 7385 7385 4.1166 1.4854 1 16383000 + 26118 17918 17603 17945 30920 30920 0.15281999556714254 KDKRAEKFIRR 11 Unmodified _KDKRAEKFIRR_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.9604797363281 3 482.959915 1445.85791 0.23677 0.00011435 0.82919 0.00040046 1.066 0.00051482 482.9602581251679 14.543 0.06938 12.04 11.992 12.061 -2.5029 16 13 2 0 0 0 0.70147 1 7386 7386 4.1166 2.9018 1 3434600 + 26119 17918 17603 17945 30921 30921 0.15281999556714254 KDKVQQAT 8 Unmodified _KDKVQQAT_ 0 0 0 ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENST00000487091.1_1_7:73790414-73795297:+|nuORF ENSG00000106665|ENST00000223398|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 459.2179260253906 2 459.256174 916.497795 0.66365 0.00030479 0.3197 0.00014682 0.98335 0.00045161 459.25608481233706 22.369 0.20839 19.62 19.491 19.699 -2.7491 15 10 2 0 0 0 8.7369 1 11962 11962 6.2058 0 1 2207200 26120 2450 17604 17946 30922 30922 0.03620596892096728 KDLCDNHEFK 10 Unmodified _KDLCDNHEFK_ 0 0 0 REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1 REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8613891601562 3 416.860767 1247.56047 -0.6804 -0.00028363 0.69198 0.00028846 0.011585 4.8294E-06 416.8610497881388 15.138 0.37018 15.138 14.933 15.303 0 249 99 3 0 0 0 0.71276 1 7187 7187 0.62683 0.063655 1 2380100 + 26121 22725 17605 17947 30923 30923 -0.05340625102030572 KDLEAMRVQTE 11 Unmodified _KDLEAMRVQTE_ 0 0 0 ENSG00000115593|ENST00000419482|SMYD1 ENSG00000115593|ENST00000419482|SMYD1 ENSG00000115593|ENST00000419482|SMYD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.3358154296875 2 660.334827 1318.6551 -0.6641 -0.00043853 0.83461 0.00055112 0.1705 0.00011259 660.3354079240954 77.524 0.70595 77.042 76.647 77.353 -0.4826 69 32 3 0 0 0 0.61059 1 42507 42507 10.8 0.64894 1 2277900 26122 3140 17606 17948 30924 30924 0.00851888649299326 KDLEIQALH 9 Unmodified _KDLEIQALH_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.259765625 2 533.798206 1065.58186 -0.23198 -0.00012383 -0.80606 -0.00043027 -1.038 -0.0005541 534.2988644320791 30.773 0.12072 30.773 30.711 30.831 0 9 5 2 0 0 0 0.17331 1 16024 16024 22.736 10.496 1 588370 26123 1879 17607 17949 30925 30925 0.05169127988983746 KDLIMEMTP 9 Unmodified _KDLIMEMTP_ 0 0 0 REV__ENST00000428818.5_3_22:28315467-28320421:+|nuORF REV__ENST00000428818.5_3_22:28315467-28320421:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3013916015625 2 539.269578 1076.5246 0.64629 0.00034852 4.2167 0.0022739 4.863 0.0026225 539.2721966385768 49.653 0.41852 49.653 49.487 49.905 0 26 18 2 0 0 0 0.18118 1 27434 27434 19.257 2.3147 1 1999500 + 26124 26945 17608 17950 30926 30926 -0.010597986032507833 KDLKNWMSN 9 Unmodified _KDLKNWMSN_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|113|2|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|113|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.1914672851562 3 379.190336 1134.54918 NaN NaN NaN NaN NaN NaN NaN 76.842 1 76.892 76.392 77.392 0.05011 0 0 0 0.84737 1 42405 42405 0.96228 0 1 + 26125 29362 17609 17951 30927 30927 -0.012714024054957918 KDLMIPRY 8 Unmodified _KDLMIPRY_ 0 0 0 ENSG00000152760|ENST00000282670|DYNLT5;ENST00000528352.1_1_1:67241210-67243134:+|nuORF ENSG00000152760|ENST00000282670|DYNLT5 ENSG00000152760|ENST00000282670|DYNLT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.287353515625 2 518.28642 1034.55829 1.0196 0.00052845 3.8843 0.0020132 4.9039 0.0025416 518.2898088082698 54.405 0.4243 54.405 54.173 54.597 0 68 18 5 0 0 0 0.71527 1 30145 30145 15.847 1.2655 1 39407000 26126 6211 17610 17952 30928 30928 0.0423899095080742 KDLPGWCTF 9 Unmodified _KDLPGWCTF_ 0 0 0 REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF REV__ENST00000419610.5_1_3:49977551-50091772:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2855834960938 2 533.754953 1065.49535 0.67957 0.00036272 3.7694 0.0020119 4.449 0.0023747 534.2577276470114 42.437 0.18985 42.437 42.299 42.488 0 12 8 2 0 0 0 0.19994 1 22894 22894 12.241 2.0573 1 1311000 + 26127 26820 17611 17953 30929 30929 -0.034775748372339876 KDMEAIQYI 9 Unmodified _KDMEAIQYI_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.77734375 2 555.778625 1109.5427 NaN NaN NaN NaN NaN NaN NaN 65.547 1 65.547 65.047 66.047 0 0 0 0 0.10759 1 36561 36561 41.84 0 1 + 26128 20434 17612 17954 30930 30930 -0.007693403568964641 KDMEAIQYI 9 Unmodified _KDMEAIQYI_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7774047851562 2 555.778625 1109.5427 NaN NaN NaN NaN NaN NaN NaN 65.731 1 65.731 65.231 66.231 0 0 0 0 0.10759 1 36660 36660 41.84 7.4379 1 + 26129 20434 17612 17954 30931 30931 -0.007693403568964641 KDMTYAQLYSF 11 Unmodified _KDMTYAQLYSF_ 0 0 0 nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH nc|ENSG00000136250|P28039-2|AOAH nc|ENSG00000136250|P28039-2|AOAH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.7450866699219 3 456.216439 1365.62749 0.6607 0.00030142 1.5196 0.00069325 2.1803 0.00099467 456.8853052398738 43.878 0.25314 39.113 38.967 39.22 -4.7648 39 15 3 0 0 0 0.29564 1 26672 26672 4.7159 1.3963 1 8765900 26130 4806 17613 17955 30932 30932 -0.04070014610920225 KDNCTAKEWTF 11 Unmodified _KDNCTAKEWTF_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2086486816406 3 448.208055 1341.60234 1.2959 0.00058083 -0.66925 -0.00029996 0.62664 0.00028087 448.2079151357172 37.083 0.54803 32.799 32.524 33.072 -4.2835 79 33 3 0 0 0 0.59689 2 21794 21651;21794 6.2344 6.2344 1 14669000 26131 5059 17614 17956 30933;30934 30934 -0.054800694135337835 KDPKLEIVM 9 Unmodified _KDPKLEIVM_ 0 0 0 ENST00000435485.5_1_9:109366800-109366911:+|nuORF ENST00000435485.5_1_9:109366800-109366911:+|nuORF ENST00000435485.5_1_9:109366800-109366911:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.2071533203125 3 358.207216 1071.59982 NaN NaN NaN NaN NaN NaN NaN 36.297 1 32.104 31.604 32.604 -4.1928 0 0 0 0.83329 1 21182 21182 2.086 0.34373 1 26132 13312 17615 17957 30935 30935 0.0668812691947096 KDQLYQLIL 9 Unmodified _KDQLYQLIL_ 0 0 0 REV__ENST00000482752.1_1_3:47963266-47963305:-|nuORF REV__ENST00000482752.1_1_3:47963266-47963305:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5559387207031 3 378.557013 1132.64921 NaN NaN NaN NaN NaN NaN NaN 45.806 1 45.482 44.982 45.982 -0.32425 0 0 0 0.12101 1 24490 24490 40.239 3.1646 1 + 26133 27728 17616 17958 30936 30936 0.0881915819995811 KDRHRHHR 8 Unmodified _KDRHRHHR_ 0 0 0 REV__ENSG00000148408|ENST00000371372|CACNA1B REV__ENSG00000148408|ENST00000371372|CACNA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.2105102539062 3 381.211456 1140.61254 NaN NaN NaN NaN NaN NaN NaN 18 1 18.014 17.514 18.514 0.013865 0 0 0 0.97444 1 8993 8993 0.45834 0 1 + 26134 20950 17617 17959 30937 30937 0.04785763937252341 KDRPIYEEDLK 11 Unmodified _KDRPIYEEDLK_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.5822448730469 3 469.248908 1404.72489 -0.56049 -0.00026301 -1.0491 -0.00049231 -1.6096 -0.00075532 469.2483724736781 18.483 0.12307 18.506 18.451 18.574 0.023106 60 24 3 0 0 0 0.72131 1 9244 9244 2.2527 1.0379 1 1628200 26135 16496 17618 17960 30938 30938 0.03872090589538857 KDRPVKLLKR 10 Unmodified _KDRPVKLLKR_ 0 0 0 REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.259033203125 3 418.278585 1251.81392 NaN NaN NaN NaN NaN NaN NaN 103.57 1 103.52 103.02 104.02 -0.047928 0 0 0 1.005 1 57520 57520 0.12286 0.12286 1 + 26136 29392 17619 17961 30939 30939 0.19809015130385887 KDRRHRSLTR 10 Unmodified _KDRRHRSLTR_ 0 0 0 ENSG00000145934|ENST00000518659|TENM2 ENSG00000145934|ENST00000518659|TENM2 ENSG00000145934|ENST00000518659|TENM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7778930664062 3 442.260476 1323.7596 1.1673 0.00051625 -0.53787 -0.00023788 0.62943 0.00027837 442.26039158764684 82.802 0.17659 82.864 82.764 82.941 0.062004 11 6 2 0 0 0 0.23999 1 45799 45799 1.4551 0.52958 1 1055400 26137 5741 17620 17962 30940 30940 0.11066816031529925 KDSDPDSDSL 10 Unmodified _KDSDPDSDSL_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7312622070312 2 539.730383 1077.44621 0.9945 0.00053676 1.5754 0.00085029 2.5699 0.001387 539.7312662595461 20.159 0.31243 17.503 17.333 17.645 -2.6564 32 22 2 0 0 0 0.6067 1 10686 10686 10.8 2.0541 1 3936200 + 26138 21612 17621 17963 30941 30941 -0.0894123638313431 KDSFMATWF 9 Unmodified _KDSFMATWF_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA REV__ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1759338378906 3 378.175915 1131.50592 -0.30713 -0.00011615 -1.066 -0.00040314 -1.3732 -0.00051929 378.1757401526109 45.135 0.21381 45.135 45.016 45.23 0 20 10 3 0 0 0 0.55144 1 24584 24584 2.4985 0 1 4781800 + 26139 24456 17622 17964 30942 30942 -0.05457592182801818 KDSSTGQL 8 Unmodified _KDSSTGQL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MSMS AL20221201_MKP_PDAC_01 4 418.211669921875 2 418.211432 834.408311 NaN NaN NaN NaN NaN NaN NaN 16.353 1 13.796 13.296 14.296 -2.557 0 0 0 0.97444 1 8466 8466 5.2307 0.90143 1 26140 2181 17623 17965 30943 30943 -0.015516577872858761 KDSTTSDVIK 10 Unmodified _KDSTTSDVIK_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1949462890625 3 365.196033 1092.56627 -0.056739 -2.0721E-05 -1.8255 -0.00066667 -1.8823 -0.00068739 365.19531147088475 39.601 0.21773 39.304 39.154 39.371 -0.29716 16 9 2 0 0 0 0.52659 1 20882 20882 14.957 4.8066 1 2654000 26141 1694 17624 17966 30944 30944 0.023687966812758532 KDSTTSDVIK 10 Unmodified _KDSTTSDVIK_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 365.196033 1092.56627 0.22709 8.2932E-05 -2.347 -0.00085711 -2.1199 -0.00077418 365.1951876701405 39.189 0.32188 39.189 39.059 39.381 0 -0.050835 -0.00045122 NaN 14.957 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 921790 26142 1694 17624 17966 0.023687966812758532 KDTLFKPLH 9 Unmodified _KDTLFKPLH_ 0 0 0 nc|ENSG00000173320|Q9P2F5-2|STOX2;ENSG00000173320|ENST00000308497|STOX2 nc|ENSG00000173320|Q9P2F5-2|STOX2 nc|ENSG00000173320|Q9P2F5-2|STOX2 MSMS AL20221201_MKP_PDAC_01 4 366.8822631835938 3 366.88172 1097.62333 NaN NaN NaN NaN NaN NaN NaN 23.439 1 20.661 20.161 21.161 -2.7784 0 0 0 0.56093 1 12688 12688 9.544 0 1 26143 8315 17625 17967 30945 30945 0.07842308748331561 KDTLSIHY 8 Unmodified _KDTLSIHY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS AL20221201_MKP_PDAC_01 4 488.7587585449219 2 488.758549 975.502546 NaN NaN NaN NaN NaN NaN NaN 22.741 1 19.963 19.463 20.463 -2.7784 0 0 0 0.93066 1 12253 12253 14.582 3.4672 1 26144 9795 17626 17968 30946 30946 0.013814810348549145 KDVLCDVTI 9 Unmodified _KDVLCDVTI_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1;BACH1|p.V40A|1|0.23|ENSG00000156273|chr21:29321399-29321399|T/C|missense_variant ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2740173339844 2 503.267893 1004.52123 0.47126 0.00023717 -1.4949 -0.00075235 -1.0237 -0.00051518 503.2659738801985 76.096 0.67684 76.096 75.791 76.468 0 97 29 5 0 0 0 0.16226 1 42420 42420 26.884 0 1 31290000 26145 6445 17627 17969 30947 30947 0.019152746144072808 KDVLSCTGTSN 11 Unmodified _KDVLSCTGTSN_ 0 0 0 nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1 nc|ENSG00000084676|Q15788-2|NCOA1 nc|ENSG00000084676|Q15788-2|NCOA1 MSMS AL20221201_MKP_PDAC_01 4 375.5152587890625 3 375.513256 1123.51794 NaN NaN NaN NaN NaN NaN NaN 40.049 1 35.519 35.019 36.019 -4.5294 0 0 0 0.76766 1 23862 23862 7.846 0 1 26146 1393 17628 17970 30948 30948 -0.038880202302379985 KDVPPKKDKL 10 Unmodified _KDVPPKKDKL_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000477718.5_1_6:33256133-33256956:-|nuORF;ENST00000468157.5_1_6:33255793-33256956:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3230590820312 2 584.358431 1166.70231 0.25976 0.00015179 -2.6863 -0.0015697 -2.4265 -0.001418 584.8586202421079 56.334 0.16837 56.266 56.212 56.38 -0.068741 12 8 2 0 0 0 0.21783 1 30671 30671 18.146 3.3081 1 2463400 26147 10595 17629 17971 30949 30949 0.1256253598260173 KDWDNEYCS 9 Unmodified _KDWDNEYCS_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-3|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.20068359375 3 387.150206 1158.42879 NaN NaN NaN NaN NaN NaN NaN 88.041 1 88.041 87.541 88.541 0 0 0 0 0.86004 1 48740 48740 0.26902 0 1 26148 1612 17630 17972 30950 30950 -0.14408855189799397 KDYDAYLSY 9 Unmodified _KDYDAYLSY_ 0 0 0 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2598266601562 2 569.258579 1136.50261 0.36001 0.00020494 2.37 0.0013492 2.7301 0.0015541 569.2599976952488 68.972 0.43295 68.491 68.286 68.719 -0.48071 46 18 3 0 0 0 0.41742 1 37675 37675 11.64 0.81637 1 4910300 26149 7863 17631 17973 30951 30951 -0.060185637558106464 KDYDAYLSY 9 Unmodified _KDYDAYLSY_ 0 0 0 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.258579 1136.50261 0.64682 0.00036821 3.4977 0.0019911 4.1445 0.0023593 569.2605418734158 68.492 0.1243 68.518 68.458 68.582 0.025154 0.058107 0.0010395 NaN 11.64 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 881990 26150 7863 17631 17973 -0.060185637558106464 KEAADMILV 9 Unmodified _KEAADMILV_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;ENST00000510774.1_1_3:130699433-130714956:+|nuORF nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2715454101562 2 495.270435 988.526318 1.0857 0.0005377 0.47085 0.0002332 1.5565 0.0007709 495.27079569563034 79.97 0.51826 73.795 73.518 74.037 -6.1757 52 31 2 0 0 0 0.08691 1 52350 52350 36.127 3.8215 1 29463000 26151 502 17632 17974 30952 30952 0.031595784770274804 KEAEEVFERL 10 Unmodified _KEAEEVFERL_ 0 0 0 ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF ENST00000583350.1_1_18:14377547-14378720:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5534362792969 3 417.218949 1248.63502 NaN NaN NaN NaN NaN NaN NaN 18.349 1 18.355 17.855 18.855 0.0060463 0 0 0 0.97855 1 9296 9296 1.4551 0 1 26152 15584 17633 17975 30953 30953 0.02064460981000593 KEAEIEYRER 10 Unmodified _KEAEIEYRER_ 0 0 0 ENSG00000014824|ENST00000264451|SLC30A9 ENSG00000014824|ENST00000264451|SLC30A9 ENSG00000014824|ENST00000264451|SLC30A9 MSMS AL20221201_MKP_PDAC_01 4 441.5613708496094 3 441.561486 1321.66263 NaN NaN NaN NaN NaN NaN NaN 83.653 1 77.478 76.978 77.978 -6.1757 0 0 0 0.73227 1 55019 55019 9.7643 0 1 26153 487 17634 17976 30954 30954 0.014663642412187983 KEALQTIY 8 Unmodified _KEALQTIY_ 0 0 0 REV__ENSG00000137857|ENST00000389037|DUOX1;REV__nc|ENSG00000137857|Q9NRD9-2|DUOX1 REV__ENSG00000137857|ENST00000389037|DUOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.53759765625 1 965.530224 964.522947 0.87094 0.00084092 -0.35661 -0.00034432 0.51433 0.0004966 965.5297401729988 59.313 0.8204 53.239 52.734 53.555 -6.0745 93 44 3 0 0 0 0.48583 1 37743 37743 36.127 3.8215 1 193810000 + 26154 20276;29655 17635 17977 30955 30955 0.03926651694666816 KEANHDGD 8 Unmodified _KEANHDGD_ 0 0 0 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;ENST00000549585.1_1_12:90035929-90049663:-|nuORF nc|ENSG00000070961|P20020-5|ATP2B1 nc|ENSG00000070961|P20020-5|ATP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.1884765625 2 443.188488 884.362424 0.30683 0.00013598 -0.55846 -0.0002475 -0.25163 -0.00011152 443.188141064177 63.8 0.47676 63.8 63.52 63.997 0 36 19 3 0 0 0 0.80763 1 35543 35543 2.0598 0 1 2315800 26155 1047 17636 17978 30956 30956 -0.08438302969523193 KEASEPQSL 9 Unmodified _KEASEPQSL_ 0 0 0 REV__nc|ENSG00000100813|Q9UKV3-5|ACIN1 REV__nc|ENSG00000100813|Q9UKV3-5|ACIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7514038085938 2 494.750921 987.48729 1.2112 0.00059923 -0.69021 -0.00034148 0.52095 0.00025774 494.75075584378214 37.748 0.4238 33.379 33.157 33.581 -4.3689 44 25 2 0 0 0 0.094149 1 22286 22286 34.402 3.1334 1 17103000 + 26156 29536 17637 17979 30957 30957 -0.006954305530030069 KEATELQSI 9 Unmodified _KEATELQSI_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7749633789062 2 509.774396 1017.53424 0.44617 0.00022744 1.3231 0.00067446 1.7692 0.0009019 509.7752680757531 61.264 0.45554 61.264 60.999 61.455 0 66 19 4 0 0 0 0.020973 1 34152 34152 62.573 4.8507 1 6570000 26157 9115 17638 17980 30958 30958 0.026174289981554466 KECDDCFCL 9 Unmodified _KECDDCFCL_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.1986083984375 2 538.198296 1074.38204 -0.10508 -5.6556E-05 0.93811 0.00050489 0.83303 0.00044833 538.1989699307601 41.801 0.40341 41.801 41.589 41.992 0 97 20 7 0 0 0 0.54444 1 22510 22510 4.756 4.756 1 53777000 + 26158 18405 17639 17981 30959 30959 -0.15217754336958933 KECKDRGF 8 Unmodified _KECKDRGF_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7408142089844 2 491.742376 981.4702 NaN NaN NaN NaN NaN NaN NaN 44.983 1 44.983 44.483 45.483 0 0 0 0 0.95607 1 24499 24499 9.3474 0.75416 1 26159 3691 17640 17982 30960 30960 -0.021276296397900296 KEDKEIYSHMT 11 Unmodified _KEDKEIYSHMT_ 0 0 0 ENSG00000214415|ENST00000398291|GNAT3 ENSG00000214415|ENST00000398291|GNAT3 ENSG00000214415|ENST00000398291|GNAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2218322753906 3 460.886982 1379.63912 0.28814 0.0001328 -0.19151 -8.8265E-05 0.096628 4.4534E-05 460.88691931432487 70.686 0.39275 70.686 70.474 70.867 0 114 38 4 0 0 0 0.69509 1 39327 39327 4.7159 2.0847 1 16688000 26160 10493 17641 17983 30961 30961 -0.03551817587617734 KEDVNLIAY 9 Unmodified _KEDVNLIAY_ 0 0 0 REV__nc|ENSG00000166736|P46098-3|HTR3A REV__nc|ENSG00000166736|P46098-3|HTR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7848510742188 2 532.784764 1063.55498 1.3251 0.00070601 -0.89381 -0.00047621 0.43133 0.00022981 532.7846937709625 35.887 0.35823 31.694 31.512 31.87 -4.1928 29 22 2 0 0 0 0.044011 1 20932 20932 47.749 2.0088 1 23887000 + 26161 22144 17642 17984 30962 30962 0.025740193777892273 KEDYYFERVTF 11 Unmodified _KEDYYFERVTF_ 0 0 0 REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 REV__nc|ENSG00000143882|Q8NEY4-2|ATP6V1C2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 748.8563842773438 2 748.856449 1495.69835 NaN NaN NaN NaN NaN NaN NaN 98.47 1 98.277 97.777 98.777 -0.19321 0 0 0 0.9435 1 53776 53776 0 0 1 + 26162 20679 17643 17985 30963 30963 -0.029675983018023544 KEEAQWQWTFD 11 Unmodified _KEEAQWQWTFD_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.8319702148438 2 734.330598 1466.64664 -0.57856 -0.00042485 0.46541 0.00034177 -0.11314 -8.3084E-05 734.3304866931261 48.751 0.46298 48.751 48.6 49.062 0 69 22 4 0 0 0 0.69316 2 26820 26703;26820 4.897 1.9018 1 12126000 + 26163 21483 17644 17986 30964;30965 30965 -0.0680134199569693 KEEAQWQWTFD 11 Unmodified _KEEAQWQWTFD_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.834228515625 2 734.330598 1466.64664 0.054398 3.9946E-05 -0.82537 -0.00060609 -0.77097 -0.00056614 734.8312214716592 50.543 0.58846 50.543 50.096 50.685 0 52 24 4 0 0 0 0.30538 1 27628 27628 2.4985 0 1 2433500 + 26164 21483 17644 17986 30966 30966 -0.0680134199569693 KEECWMWLTQP 11 Unmodified _KEECWMWLTQP_ 0 0 0 REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.3356323242188 2 725.828323 1449.64209 0.63312 0.00045954 0.42201 0.00030631 1.0551 0.00076585 725.8281373939705 49.701 0.3126 49.309 49.138 49.451 -0.3923 45 15 4 0 0 0 0.62338 1 26695 26695 10.151 3.0488 1 7972200 + 26165 27408 17645 17987 30967 30967 -0.06474265734436813 KEECWMWLTQP 11 Unmodified _KEECWMWLTQP_ 0 0 0 REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 725.8287353515625 2 725.828323 1449.64209 NaN NaN NaN NaN NaN NaN NaN 46.679 1 46.343 45.843 46.843 -0.33664 0 0 0 0.75116 1 24994 24994 14.405 0.79051 1 + 26166 27408 17645 17987 30968 30968 -0.06474265734436813 KEECWMWLTQP 11 Unmodified _KEECWMWLTQP_ 0 0 0 REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF REV__ENST00000466443.1_1_3:39142410-39149053:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 725.828323 1449.64209 0.63312 0.00045954 0.42201 0.00030631 1.0551 0.00076585 725.8281373939705 49.701 0.3126 49.309 49.138 49.451 -0.3923 0.037306 0.0012668 NaN 10.151 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 7972200 + 26167 27408 17645 17987 -0.06474265734436813 KEEDLEDKNNF 11 Unmodified _KEEDLEDKNNF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8176879882812 2 690.817521 1379.62049 -0.63877 -0.00044127 1.3619 0.00094082 0.72313 0.00049955 690.8179900482693 33.246 0.44773 33.246 32.968 33.415 0 66 22 4 0 0 0 0.42108 1 17350 17350 20.415 0 1 6011500 26168 3530 17646 17988 30969 30969 -0.05413655957795527 KEEDLEDKNNF 11 Unmodified _KEEDLEDKNNF_ 0 0 0 nc|ENSG00000120694|Q92598-2|HSPH1;nc|ENSG00000120694|Q92598-3|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 nc|ENSG00000120694|Q92598-2|HSPH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 690.817521 1379.62049 -0.31263 -0.00021597 1.0364 0.00071596 0.72377 0.00049999 690.8185224796548 33.402 0.3158 33.243 33.078 33.394 -0.15918 -0.0014555 -0.00029688 NaN 20.415 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1575500 26169 3530 17646 17988 -0.05413655957795527 KEEEEEDREEE 11 Unmodified _KEEEEEDREEE_ 0 0 0 ENSG00000164600|ENST00000297142|NEUROD6 ENSG00000164600|ENST00000297142|NEUROD6 ENSG00000164600|ENST00000297142|NEUROD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.19873046875 3 484.198719 1449.57433 0.53042 0.00025683 -0.81951 -0.0003968 -0.28909 -0.00013998 484.1984740308111 50.775 0.51892 50.775 50.477 50.996 0 159 28 7 0 0 0 0.73451 1 28132 28132 1.0136 0 1 492040000 26170 7211 17647 17989 30970 30970 -0.13247765650544352 KEEEEEQFEK 10 Unmodified _KEEEEEQFEK_ 0 0 0 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.7993774414062 2 662.798797 1323.58304 -0.23259 -0.00015416 1.1243 0.00074521 0.89175 0.00059105 662.7996367342168 33.368 0.50954 33.209 32.86 33.369 -0.15918 39 20 3 0 0 0 0.52097 1 17420 17420 15.248 0 1 4217800 + 26171 24256 17648 17990 30971 30971 -0.06580747223415528 KEEEMSKQTDW 11 Unmodified _KEEEMSKQTDW_ 0 0 0 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 REV__nc|ENSG00000146416|Q9NVV5-3|AIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.8128662109375 2 705.813924 1409.61329 0.51661 0.00036463 -2.1823 -0.0015403 -1.6657 -0.0011757 705.8124737278223 62.127 0.23673 61.639 61.489 61.726 -0.48764 25 10 3 0 0 0 0.5551 1 33835 33835 13.615 5.4593 1 2245800 + 26172 29686 17649 17991 30972 30972 -0.07512711829872387 KEEENYRWIDN 11 Unmodified _KEEENYRWIDN_ 0 0 0 REV__ENSG00000157119|ENST00000287777|KLHL40 REV__ENSG00000157119|ENST00000287777|KLHL40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 748.344970703125 2 748.344237 1494.67392 0.24197 0.00018107 2.9293 0.0021921 3.1713 0.0023732 748.3459248009401 71.125 0.19992 70.648 70.526 70.726 -0.47735 14 8 2 0 0 0 0.72309 1 38932 38932 2.086 0 1 822220 + 26173 21366 17650 17992 30973 30973 -0.05362858455282549 KEEHVTTFEDE 11 Unmodified _KEEHVTTFEDE_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 682.8065185546875 2 682.304246 1362.59394 0.38201 0.00026064 0.88269 0.00060227 1.2647 0.00086291 682.3048652230713 42.439 0.30526 42.439 42.26 42.565 0 24 14 2 0 0 0 0.59689 1 22969 22969 11.495 0.6952 1 2705300 26174 1160 17651 17993 30974 30974 -0.07285344849151443 KEEIIEAFVQ 10 Unmodified _KEEIIEAFVQ_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000588273.1_1_19:46027302-46029432:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2124938964844 3 402.551928 1204.63395 -0.1949 -7.8456E-05 -3.4449 -0.0013868 -3.6398 -0.0014652 402.5508088832989 29.706 0.15776 29.736 29.653 29.811 0.030106 9 6 2 0 0 0 0.23986 1 15528 15528 2.086 0.17963 1 1137400 26175 3878 17652 17994 30975 30975 0.03982246612099516 KEEKEMEWK 9 Unmodified _KEEKEMEWK_ 0 0 0 REV__nc|ENSG00000068400|Q4V328-2|GRIPAP1;REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.7978515625 2 618.800088 1235.58562 NaN NaN NaN NaN NaN NaN NaN 57.791 1 57.301 56.801 57.801 -0.48974 0 0 0 0.25233 1 31411 31411 27.629 1.3607 1 + 26176 17436;27544 17653 17995 30976 30976 -0.022745702994598105 KEEKILAG 8 Unmodified _KEEKILAG_ 0 0 0 REV__ENSG00000184083|ENST00000375180|FAM120C REV__ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2644958496094 2 444.263468 886.512382 1.7117 0.00076044 0.29155 0.00012952 2.0032 0.00088996 444.26344336323046 103.41 0.096329 97.238 97.186 97.282 -6.1757 19 12 2 0 0 0 0.80975 1 69338 69338 0.79363 0 1 10823000 + 26177 23394 17654 17996 30977 30977 0.06458669040239329 KEEKIVLL 8 Unmodified _KEEKIVLL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.3099975585938 2 486.310418 970.606283 NaN NaN NaN NaN NaN NaN NaN 68.692 1 68.212 67.712 68.712 -0.48071 0 0 0 0.96881 1 37546 37546 6.7232 0.51738 1 26178 490 17655 17997 30978 30978 0.11980388142512766 KEEKKLKAK 9 Unmodified _KEEKKLKAK_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.355224609375 2 551.353148 1100.69174 1.5428 0.00085062 -0.30528 -0.00016832 1.2375 0.00068231 551.3530504524882 103.19 0.13394 97.017 96.949 97.083 -6.1757 65 38 2 0 0 0 0.56345 1 69198 69198 3.5965 1.7523 1 9130700 26179 4098 17656 17998 30979 30979 0.1454255332816956 KEELSGYYI 9 Unmodified _KEELSGYYI_ 0 0 0 REV__ENSG00000136875|ENST00000374198|PRPF4 REV__ENSG00000136875|ENST00000374198|PRPF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2767944335938 2 551.276772 1100.53899 0.39913 0.00022003 0.33737 0.00018598 0.7365 0.00040602 551.2766729374565 87.479 0.52606 87.479 87.17 87.696 0 68 24 4 0 0 0 0.49272 1 48508 48508 7.9102 3.1541 1 4047400 + 26180 20191 17657 17999 30980 30980 -0.0072568685909573105 KEEMEPGFRE 10 Unmodified _KEEMEPGFRE_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.2886962890625 2 626.287345 1250.56014 0.43985 0.00027547 1.3658 0.00085536 1.8056 0.0011308 626.789525305058 68.14 0.6821 67.658 67.37 68.052 -0.48219 85 31 3 0 0 0 0.47059 1 37154 37154 20.415 7.3721 1 8675600 26181 5233 17658 18000 30981 30981 -0.055120448218985985 KEEMEPGFRE 10 Unmodified _KEEMEPGFRE_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 626.287345 1250.56014 0.40385 0.00025293 2.1151 0.0013247 2.519 0.0015776 626.2885773994583 67.677 0.37035 67.677 67.459 67.829 0 0.0094023 0.00063647 NaN 20.415 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 945300 26182 5233 17658 18000 -0.055120448218985985 KEEQEEYIRED 11 Unmodified _KEEQEEYIRED_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 734.8338623046875 2 734.333535 1466.65252 0.61386 0.00045078 -1.5981 -0.0011736 -0.98427 -0.00072279 734.8331143315478 49.761 0.89478 49.368 49.077 49.971 -0.3923 121 44 5 0 0 0 0.61059 1 26677 26677 10.8 3.1906 1 15454000 26183 4081;14328 17659 18001 30982 30982 -0.062142882746684336 KEERENIPT 9 Unmodified _KEERENIPT_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ANKRD12|p.N935Kfs*25|1|0.23|ENSG00000101745|chr18:9256063-9256064|-/AA|frameshift_variant nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.287353515625 2 558.288202 1114.56185 -0.036128 -2.017E-05 0.12008 6.7038E-05 0.083949 4.6868E-05 558.2882124119242 24.345 0.14087 24.345 24.285 24.426 0 13 8 2 0 0 0 0.52067 1 12444 12444 6.2058 0.44535 1 597440 26184 1987 17660 18002 30983 30983 0.009153322583642876 KEEREYFDEMK 11 Unmodified _KEEREYFDEMK_ 0 0 0 nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 nc|ENSG00000162627|Q9UNH6-2|SNX7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 752.3399047851562 2 752.342849 1502.67114 NaN NaN NaN NaN NaN NaN NaN 58.828 1 58.337 57.837 58.837 -0.49079 0 0 0 0.94002 1 31998 31998 2.4985 1.169 1 26185 6885 17661 18003 30984 30984 -0.06008449904470581 KEERTHSETI 10 Unmodified _KEERTHSETI_ 0 0 0 REV__ENST00000606455.5_1_2:66670102-66794607:+|nuORF REV__ENST00000606455.5_1_2:66670102-66794607:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.2074890136719 3 410.542203 1228.60478 NaN NaN NaN NaN NaN NaN NaN 24.621 1 24.621 24.121 25.121 0 0 0 0 0.94046 1 12589 12589 6.1918 0.66855 1 + 26186 29297 17662 18004 30985 30985 -0.0003789768416027073 KEESNQYKLEL 11 Unmodified _KEESNQYKLEL_ 0 0 0 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.9046325683594 3 460.90503 1379.69326 0.51472 0.00023724 -0.84776 -0.00039074 -0.33304 -0.0001535 461.2387964008829 31.54 0.15624 31.54 31.463 31.619 0 11 7 2 0 0 0 0.71728 1 16438 16438 2.6312 0 1 1092800 + 26187 29857 17663 18005 30986 30986 0.018600978356062114 KEETVMGPAWL 11 Unmodified _KEETVMGPAWL_ 0 0 0 REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF REV__ENST00000357066.7_1_19:2071060-2071678:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.82373046875 2 630.818281 1259.62201 3.6317 0.0022909 2.612 0.0016477 6.2437 0.0039387 630.8201034160915 98.024 0.73493 98.005 97.733 98.468 -0.018188 44 26 2 0 0 0 0.70701 1 54539 54539 3.5965 0.31518 1 1008600 + 26188 25840 17664 18006 30987 30987 0.002583065972658005 KEEWTGEKWGE 11 Unmodified _KEEWTGEKWGE_ 0 0 0 REV__ENST00000471540.5_1_21:46697685-46703407:-|nuORF REV__ENST00000471540.5_1_21:46697685-46703407:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2144470214844 3 460.213975 1377.62009 0.89594 0.00041232 -0.11166 -5.139E-05 0.78428 0.00036094 460.21419991979883 49.852 0.36023 49.852 49.649 50.009 0 30 16 3 0 0 0 0.70705 1 27511 27511 3.5927 0.27303 1 2784100 + 26189 23604 17665 18007 30988 30988 -0.05361030887002016 KEEWWTHMMHT 11 Unmodified _KEEWWTHMMHT_ 0 0 0 REV__ENST00000398117.1_1_18:60795154-60795277:-|nuORF REV__ENST00000398117.1_1_18:60795154-60795277:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 757.8274536132812 2 758.329021 1514.64349 -0.05723 -4.3399E-05 -2.9902 -0.0022676 -3.0474 -0.002311 759.3285398807532 40.019 0.29685 40.019 39.792 40.089 0 29 14 3 0 0 0 0.30286 1 21518 21518 4.897 1.6157 1 1923000 + 26190 26560 17666 18008 30989 30989 -0.09324631645722548 KEFDPDYC 8 Unmodified _KEFDPDYC_ 0 0 0 REV__ENSG00000134201|ENST00000256593|GSTM5 REV__ENSG00000134201|ENST00000256593|GSTM5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1016.739807128906 1 1016.40297 1015.3957 0.90315 0.00091796 -3.4844 -0.0035416 -2.5813 -0.0026236 1016.3990224199007 61.736 0.21465 55.56 55.404 55.619 -6.1757 14 10 2 0 0 0 8.7369 1 39741 39741 15.847 1.0089 1 21526000 + 26191 19959 17667 18009 30990 30990 -0.11138437241834254 KEFLFKHPKR 10 Unmodified _KEFLFKHPKR_ 0 0 0 ENST00000550043.1_1_14:28734103-28734340:+|nuORF;ENSG00000176171|ENST00000368636|BNIP3 ENST00000550043.1_1_14:28734103-28734340:+|nuORF ENST00000550043.1_1_14:28734103-28734340:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 665.3959350585938 2 665.393139 1328.77173 NaN NaN NaN NaN NaN NaN NaN 103.21 1 103.16 102.66 103.66 -0.047928 0 0 0 1.0024 1 57317 57317 0.40072 0.093686 1 26192 8572 17668 18010 30991 30991 0.12049039722023736 KEGPPGVPG 9 Unmodified _KEGPPGVPG_ 0 0 0 REV__ENSG00000131094|ENST00000253407|C1QL1 REV__ENSG00000131094|ENST00000253407|C1QL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2272644042969 2 419.226885 836.439217 1.2026 0.00050417 0.78394 0.00032865 1.9866 0.00083282 419.2272713301945 42.881 0.4365 38.196 37.994 38.431 -4.6846 38 27 2 0 0 0 0.087258 1 25904 25904 36.044 1.9418 1 9981500 + 26193 19770 17669 18011 30992 30992 0.01445540317627092 KEGSYPDEHF 10 Unmodified _KEGSYPDEHF_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5123291015625 3 403.512132 1207.51457 -0.032577 -1.3145E-05 0.73913 0.00029825 0.70655 0.0002851 403.5126328643696 31.24 0.24808 31.24 31.111 31.359 0 20 11 2 0 0 0 0.69126 1 16243 16243 3.8763 0 1 1454600 + 26194 21005 17670 18012 30993 30993 -0.08088947012629433 KEGTVYAIQDK 11 Unmodified _KEGTVYAIQDK_ 0 0 0 REV__nc|ENSG00000135315|Q5TB80-2|CEP162 REV__nc|ENSG00000135315|Q5TB80-2|CEP162 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.8971252441406 3 417.890832 1250.65067 0.48945 0.00020454 1.3084 0.00054678 1.7979 0.00075131 417.8914204858214 23.815 0.63073 20.988 20.726 21.356 -2.8273 110 37 4 0 0 0 0.68995 1 12775 12775 5.1984 1.6114 1 67936000 + 26195 20050 17671 18013 30994 30994 0.03536747498014847 KEHGIIHRD 9 Unmodified _KEHGIIHRD_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MSMS AL20221201_MKP_PDAC_01 4 368.8680725097656 3 368.868473 1103.58359 NaN NaN NaN NaN NaN NaN NaN 51.4 1 45.751 45.251 46.251 -5.649 0 0 0 0.56093 1 32342 32342 9.544 1.5986 1 26196 10906 17672 18014 30995 30995 0.03594181797620877 KEHQAYVFL 9 Unmodified _KEHQAYVFL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185214522-185216779:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8680419921875 3 378.869591 1133.58694 -0.51323 -0.00019445 -4.3791 -0.0016591 -4.8924 -0.0018536 378.8679696324622 19.073 0.17874 19.073 18.931 19.11 0 25 15 3 0 0 0 0.57331 1 9485 9485 2.9952 1.3426 1 440330 26197 7092 17673 18015 30996 30996 0.025494318515939085 KEHRPSRIL 9 Unmodified _KEHRPSRIL_ 0 0 0 REV__nc|ENSG00000063244|P26368-2|U2AF2 REV__nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2297058105469 3 379.228001 1134.66217 0.36485 0.00013836 3.2618 0.001237 3.6267 0.0013753 379.22921947026765 48.294 0.22376 48.255 48.122 48.346 -0.038643 18 10 2 0 0 0 0.58145 1 26031 26031 2.4985 0.41248 1 2851700 + 26198 17345 17674 18016 30997 30997 0.10023034102709971 KEIIDPVL 8 Unmodified _KEIIDPVL_ 0 0 0 ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF ENSG00000127824|ENST00000248437|TUBA4A ENSG00000127824|ENST00000248437|TUBA4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7820129394531 2 463.781493 925.548434 1.0129 0.00046976 -0.098444 -4.5656E-05 0.91446 0.00042411 463.78149697826206 60.494 0.3273 60.494 60.368 60.695 0 25 14 2 0 0 0 0.78849 1 33824 33824 9.3474 0.75416 1 1513500 26199 4027 17675 18017 30998 30998 0.08268126217080862 KEIRKLPLIQ 10 Unmodified _KEIRKLPLIQ_ 0 0 0 ENST00000460026.6_1_X:101854673-101856400:+|nuORF;ENST00000602463.5_1_X:101854673-101860424:+|nuORF;ENST00000477663.5_1_X:101854673-101856400:+|nuORF;ENST00000246174.6_2_X:101854673-101855883:+|nuORF ENST00000460026.6_1_X:101854673-101856400:+|nuORF ENST00000460026.6_1_X:101854673-101856400:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.4043579101562 2 619.403173 1236.79179 1.3643 0.00084502 0.53638 0.00033224 1.9006 0.0011773 619.4029397921037 105.85 1.1775 99.674 99.359 100.54 -6.1757 438 165 5 0 0 0 0.71276 1 70804 70804 1.4819 0 1 27090000 26200 11123 17676 18018 30999 30999 0.18286790662000385 KEIRQRILRL 10 Unmodified _KEIRQRILRL_ 0 0 0 ENSG00000180785|ENST00000396952|OR51E1 ENSG00000180785|ENST00000396952|OR51E1 ENSG00000180785|ENST00000396952|OR51E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2907409667969 3 442.289372 1323.84629 1.7101 0.00075636 0.31428 0.000139 2.0244 0.00089537 442.2893439166605 105.05 0.12177 98.876 98.789 98.911 -6.1757 30 11 3 0 0 0 0.72044 1 70314 70314 0.62683 0 1 72945000 26201 8923 17677 18019 31000 31000 0.19731802533419796 KEISEARHLPE 11 Unmodified _KEISEARHLPE_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MSMS AL20221201_MKP_PDAC_01 4 654.8505859375 2 654.848958 1307.68336 NaN NaN NaN NaN NaN NaN NaN 75.494 1 69.318 68.818 69.818 -6.1757 0 0 0 0.61053 1 49375 49375 20.415 4.2654 1 26202 4693 17678 18020 31001 31001 0.04182954620887358 KEKERLQNMD 10 Unmodified _KEKERLQNMD_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS AL20221201_MKP_PDAC_01 4 430.8883666992188 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 15.699 1 13.172 12.672 13.672 -2.5273 0 0 0 0.97592 1 8078 8078 1.5923 0.37745 1 26203 6517 17679 18021 31002 31002 0.006550218521169882 KEKQWYWWFWE 11 Unmodified _KEKQWYWWFWE_ 0 0 0 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4043579101562 2 858.403901 1714.79325 NaN NaN NaN NaN NaN NaN NaN 66.019 1 66.019 65.519 66.519 0 0 0 0 0.9435 1 36821 36821 0 0 1 + 26204 16924 17680 18022 31003 31003 -0.03555620039924179 KEKQWYWWFWE 11 Unmodified _KEKQWYWWFWE_ 0 0 0 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2 MSMS AL20221201_MKP_PDAC_01 4 858.4054565429688 2 858.403901 1714.79325 NaN NaN NaN NaN NaN NaN NaN 54.607 1 48.741 48.241 49.241 -5.8653 0 0 0 0.9435 1 34661 34661 0 0 1 + 26205 16924 17680 18022 31004 31004 -0.03555620039924179 KEKRHKEL 8 Unmodified _KEKRHKEL_ 0 0 0 REV__nc|ENSG00000078018|P11137-3|MAP2 REV__nc|ENSG00000078018|P11137-3|MAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.32080078125 2 534.31964 1066.62473 0.29104 0.00015551 3.0512 0.0016303 3.3422 0.0017858 534.3210849929919 99.468 0.19675 99.311 99.18 99.377 -0.1575 14 6 3 0 0 0 0.70294 1 54309 54309 16.942 0 1 2138100 + 26206 17620 17681 18023 31005 31005 0.09407942837083283 KEKRMVPRL 9 Unmodified _KEKRMVPRL_ 0 0 0 REV__ENSG00000173473|ENST00000254480|SMARCC1 REV__ENSG00000173473|ENST00000254480|SMARCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.1536560058594 3 386.237621 1155.69103 NaN NaN NaN NaN NaN NaN NaN 13.882 1 13.889 13.389 14.389 0.0073986 0 0 0 0.85852 1 6860 6860 0.20686 0 1 + 26207 22732 17682 18024 31006 31006 0.11941435407493373 KEKRRRWEEWE 11 Unmodified _KEKRRRWEEWE_ 0 0 0 REV__nc|ENSG00000142459|Q96CN4|EVI5L REV__nc|ENSG00000142459|Q96CN4|EVI5L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.4237060546875 2 816.423688 1630.83282 NaN NaN NaN NaN NaN NaN NaN 77.451 1 77.501 77.001 78.001 0.05011 0 0 0 0.9435 1 42747 42747 0 0 1 + 26208 20572 17683 18025 31007 31007 0.04263899963552831 KELDEAANDLF 11 Unmodified _KELDEAANDLF_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3070678710938 2 632.806425 1263.5983 -0.24312 -0.00015385 -0.33476 -0.00021184 -0.57788 -0.00036569 632.8062094409165 40.661 0.19416 40.661 40.545 40.739 0 20 10 2 0 0 0 0.5229 1 21860 21860 15.248 1.3424 1 7206600 + 26209 24033 17684 18026 31008 31008 -0.02295835635595722 KELKVSILA 9 Unmodified _KELKVSILA_ 0 0 0 nc|ENSG00000173064|Q9Y4D8-4|HECTD4 nc|ENSG00000173064|Q9Y4D8-4|HECTD4 nc|ENSG00000173064|Q9Y4D8-4|HECTD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8260192871094 2 500.823692 999.632832 1.701 0.00085192 1.3376 0.00066992 3.0387 0.0015218 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.59532 1 72954 72954 1.6526 0 1 7573500 26210 16387 17685 18027 31009 31009 0.1330007703385263 KELLRFRRKWR 11 Unmodified _KELLRFRRKWR_ 0 0 0 GLRA1|p.R349W|1|0.03|ENSG00000145888|chr5:151828935-151828935|G/A|missense_variant GLRA1|p.R349W|1|0.03|ENSG00000145888|chr5:151828935-151828935|G/A|missense_variant GLRA1|p.R349W|1|0.03|ENSG00000145888|chr5:151828935-151828935|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.9943237304688 3 529.995071 1586.96338 NaN NaN NaN NaN NaN NaN NaN 8.6123 1 8.6299 8.1299 9.1299 0.017581 0 0 0 0.9435 1 4284 4284 0 0 1 26211 15902 17686 18028 31010 31010 0.19337960472989835 KELQQILVVKK 11 Unmodified _KELQQILVVKK_ 0 0 0 REV__ENSG00000181433|ENST00000370709|SAGE1 REV__ENSG00000181433|ENST00000370709|SAGE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.42919921875 2 663.429387 1324.84422 1.2205 0.00080973 -0.57722 -0.00038294 0.6433 0.00042679 663.4287898334229 105.69 0.71431 99.513 99.324 100.04 -6.1757 251 80 5 0 0 0 0.7187 1 71065 71065 2.4985 1.3051 1 46970000 + 26212 23205 17687 18029 31011 31011 0.19479329004934698 KELRIKYIL 9 Unmodified _KELRIKYIL_ 0 0 0 REV__ENSG00000167858|ENST00000338694|TEKT1 REV__ENSG00000167858|ENST00000338694|TEKT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.377685546875 2 588.379166 1174.74378 1.4804 0.00087103 -2.5451 -0.0014975 -1.0647 -0.00062645 588.3776028300066 104.29 0.13076 98.113 98.032 98.163 -6.1757 25 11 3 0 0 0 0.59218 1 69856 69856 1.8442 0.19162 1 19483000 + 26213 22256 17688 18030 31012 31012 0.16339716741936172 KELRNPARK 9 Unmodified _KELRNPARK_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2280578613281 3 371.228001 1110.66217 NaN NaN NaN NaN NaN NaN NaN 37.665 1 37.665 37.165 38.165 0 0 0 0 0.85447 1 20065 20065 0.96228 0 1 26214 11653 17689 18031 31013 31013 0.1112703410267386 KELRNPARK 9 Unmodified _KELRNPARK_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2273559570312 3 371.228001 1110.66217 NaN NaN NaN NaN NaN NaN NaN 40.458 1 40.458 39.958 40.958 0 0 0 0 0.85447 1 21744 21744 0.96228 0 1 26215 11653 17689 18031 31014 31014 0.1112703410267386 KELYTMMMD 9 Unmodified _KELYTMMMD_ 0 0 0 ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8377685546875 3 387.837806 1160.49159 -0.35004 -0.00013576 1.5296 0.00059324 1.1796 0.00045748 387.8381728131748 56.24 0.33366 56.24 56.049 56.383 0 27 15 2 0 0 0 0.52067 1 31261 31261 3.8763 0 1 8314500 26216 14337 17690 18032 31015 31015 -0.08223748717614399 KEMNYILRY 9 Unmodified _KEMNYILRY_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.323974609375 2 615.320991 1228.62743 0.60848 0.00037441 1.2397 0.00076284 1.8482 0.0011373 615.3216485810233 66.179 0.87913 60.003 59.594 60.473 -6.1757 87 50 2 0 0 0 0.11784 3 42867 42867;43010;43150 31.268 3.6395 1 49621000 + 26217 24211 17691 18033 31016;31017;31018 31016 0.022260301797359716 KENFQRFLQ 9 Unmodified _KENFQRFLQ_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.8850402832031 3 403.884012 1208.63021 0.50143 0.00020252 0.48218 0.00019475 0.98362 0.00039727 403.88418556703954 30.693 0.21638 30.59 30.474 30.691 -0.10269 23 8 4 0 0 0 0.34999 1 15912 15912 10.151 1.7063 1 3566900 26218 2229 17692 18034 31019 31019 0.0342362162889458 KENFQRFLQ 9 Unmodified _KENFQRFLQ_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8837890625 3 403.884012 1208.63021 1.0146 0.00040979 0.7751 0.00031305 1.7897 0.00072284 403.8843127758214 34.737 0.34427 30.642 30.457 30.801 -4.0951 52 20 3 0 0 0 0.23158 1 20005 20005 14.405 2.8875 1 23418000 26219 2229 17692 18034 31020 31020 0.0342362162889458 KENFQRFLQ 9 Unmodified _KENFQRFLQ_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.884012 1208.63021 -0.29817 -0.00012043 2.664 0.0010759 2.3658 0.00095551 403.884306504887 30.448 0.23208 30.479 30.393 30.625 0.030106 -0.091881 0.0022953 NaN 14.405 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1512200 26220 2229 17692 18034 0.0342362162889458 KENLVFIM 8 Unmodified _KENLVFIM_ 0 0 0 REV__ENSG00000151835|ENST00000382292|SACS REV__ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2759399414062 2 497.275521 992.536489 0.83227 0.00041387 -0.071353 -3.5482E-05 0.76092 0.00037839 497.27543538554886 66.221 0.74979 60.045 59.74 60.489 -6.1757 109 42 4 0 0 0 0.57045 1 42913 42913 28.487 1.6032 1 62431000 + 26221 21093 17693 18035 31021 31021 0.03992186202242465 KEPEELAL 8 Unmodified _KEPEELAL_ 0 0 0 REV__ENSG00000167646|ENST00000524407|DNAAF3 REV__ENSG00000167646|ENST00000524407|DNAAF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7526550292969 2 464.752933 927.491313 NaN NaN NaN NaN NaN NaN NaN 74.067 1 74.067 73.567 74.567 0 0 0 0 0.97444 1 41223 41223 2.8892 0 1 + 26222 22234 17694 18036 31022 31022 0.02466658940693378 KEPGYSFVF 9 Unmodified _KEPGYSFVF_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-2|TNS1;REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2689208984375 2 537.26875 1072.52295 0.48419 0.00026014 0.19925 0.00010705 0.68345 0.00036719 537.2687795732053 49.297 1.2176 48.926 48.335 49.552 -0.37172 225 61 5 0 0 0 0.062454 1 26547 26547 41.956 0.11592 1 140200000 + 26223 27649;17644 17695 18037 31023 31023 -0.010413483053298478 KEPGYSFVF 9 Unmodified _KEPGYSFVF_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-2|TNS1;REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2689208984375 2 537.26875 1072.52295 0.76511 0.00041107 0.06267 3.3671E-05 0.82778 0.00044474 537.268684032988 54.733 1.1235 48.868 48.266 49.389 -5.8653 272 69 5 0 0 0 0.078314 1 34637 34637 38.176 0.20157 1 880120000 + 26224 27649;17644 17695 18037 31024 31024 -0.010413483053298478 KEPLSHRFNEF 11 Unmodified _KEPLSHRFNEF_ 0 0 0 nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1 nc|ENSG00000187239|Q96RU3-3|FNBP1 nc|ENSG00000187239|Q96RU3-3|FNBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.35791015625 2 702.356951 1402.69935 NaN NaN NaN NaN NaN NaN NaN 95.037 1 95.037 94.537 95.537 0 0 0 0 0.94002 1 52536 52536 2.4985 0.84587 1 26225 9546 17696 18038 31025 31025 0.014106608578003943 KEPNFDPPYY 10 Unmodified _KEPNFDPPYY_ 0 0 0 REV__ENSG00000104957|ENST00000221554|YJU2B REV__ENSG00000104957|ENST00000221554|YJU2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.2937622070312 2 635.292953 1268.57135 0.43249 0.00027476 2.4874 0.0015802 2.9198 0.001855 635.2947399692745 67.942 0.46477 61.766 61.546 62.011 -6.1757 58 26 3 0 0 0 0.33553 1 44250 44250 25.399 1.6095 1 27693000 + 26226 18392 17697 18039 31026 31026 -0.052188994560992796 KEPRFSYKI 9 Unmodified _KEPRFSYKI_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8887023925781 3 389.888874 1166.64479 -0.04389 -1.7112E-05 -0.17744 -6.9181E-05 -0.22133 -8.6293E-05 389.88878912309167 29.296 0.27829 29.326 29.154 29.432 0.030104 40 12 4 0 0 0 0.12357 1 15338 15338 30.703 3.6151 1 131610000 + 26227 20877 17698 18040 31027 31027 0.06813693777030494 KEPWNMKRHEM 11 Unmodified _KEPWNMKRHEM_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708;nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254 ENSG00000182141|ENST00000356929|ZNF708;nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.9086608886719 3 495.907834 1484.70167 0.37409 0.00018551 1.3524 0.00067067 1.7265 0.00085618 495.9084044354806 77.79 0.23663 77.842 77.751 77.987 0.052452 14 9 2 0 0 0 0.71938 1 42960 42960 2.4348 0.97967 1 5240200 26228 10421;9021 17699 18041 31028 31028 -0.021289500004058937 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.811279296875 2 593.810782 1185.60701 0.8717 0.00051763 -1.2626 -0.00074977 -0.39094 -0.00023214 593.8098370765026 81.035 0.56541 80.543 80.271 80.837 -0.49247 97 32 4 0 0 0 0.13231 1 44306 44306 32.305 3.2239 1 19981000 26229 9805 17700 18042 31029 31029 0.02163182791559848 KEPYNYFLL 9 Unmodified _KEPYNYFLL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8104248046875 2 593.810782 1185.60701 -0.020609 -1.2238E-05 -0.59399 -0.00035272 -0.6146 -0.00036496 593.8100210362906 80.369 0.54352 80.426 80.218 80.762 0.057587 60 25 3 0 0 0 0.13231 2 44450 44450;44573 32.305 10.352 1 66369000 26230 9805 17700 18042 31030;31031 31030 0.02163182791559848 KEQASEFRRDL 11 Unmodified _KEQASEFRRDL_ 0 0 0 REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.8573608398438 2 689.857315 1377.70008 -0.042709 -2.9463E-05 1.3885 0.00095788 1.3458 0.00092842 689.8582426189871 48.129 0.27668 48.129 47.995 48.272 0 41 13 4 0 0 0 0.68649 1 26460 26460 10.151 10.151 1 26785000 + 26231 20757 17701 18043 31032 31032 0.026334555068615373 KEQDEPDSL 9 Unmodified _KEQDEPDSL_ 0 0 0 REV__ENST00000392857.9_1_2:148716431-148730372:-|nuORF REV__ENST00000392857.9_1_2:148716431-148730372:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1666564941406 3 354.164621 1059.47203 0.46637 0.00016517 1.799 0.00063713 2.2653 0.0008023 354.1665277654727 85.439 0.75462 84.938 84.715 85.469 -0.5015 242 54 6 0 0 0 0.55144 2 46668 46668;46768 2.4985 0 1 42254000 + 26232 26406 17702 18044 31033;31034 31033 -0.05532342140850233 KEQDYVVGF 9 Unmodified _KEQDYVVGF_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7691650390625 2 542.769114 1083.52368 0.27635 0.00014999 2.1163 0.0011487 2.3927 0.0012987 542.7699174274924 86.693 0.44083 86.19 85.929 86.37 -0.50318 37 17 3 0 0 0 0.39863 1 47389 47389 12.532 5.2423 1 2659400 + 26233 19423 17703 18045 31035 31035 -0.014745536562713824 KEQDYVVGF 9 Unmodified _KEQDYVVGF_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.769114 1083.52368 0.22004 0.00011943 1.0912 0.00059228 1.3113 0.00071172 542.769493843621 86.168 0.29791 86.168 85.995 86.293 0 -0.011217 -0.00052366 NaN 12.532 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 863450 + 26234 19423 17703 18045 -0.014745536562713824 KEQEHMKEELE 11 Unmodified _KEQEHMKEELE_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 715.8329467773438 2 715.335024 1428.65549 0.3474 0.00024851 -1.8919 -0.0013533 -1.5445 -0.0011048 715.3337500812805 52.089 0.29688 51.655 51.512 51.809 -0.43367 36 14 3 0 0 0 0.65846 1 28109 28109 8.1555 0.54658 1 5079400 + 26235 24638 17704 18046 31036 31036 -0.0416873642147948 KEQEQLQSESD 11 Unmodified _KEQEQLQSESD_ 0 0 0 REV__ENSG00000143850|ENST00000272203|PLEKHA6 REV__ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8015747070312 2 660.799328 1319.5841 NaN NaN NaN NaN NaN NaN NaN 20.738 1 20.767 20.267 21.267 0.028357 0 0 0 0.94216 1 10504 10504 0.96228 0.56156 1 + 26236 20675 17705 18047 31037 31037 -0.06290532854495723 KEQIKCFQDD 10 Unmodified _KEQIKCFQDD_ 0 0 0 REV__ENSG00000052723|ENST00000060969|SIKE1 REV__ENSG00000052723|ENST00000060969|SIKE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2962646484375 2 627.29517 1252.57579 NaN NaN NaN NaN NaN NaN NaN 94.763 1 94.763 94.263 95.263 0 0 0 0 1.0029 1 52381 52381 0.35063 0 1 + 26237 17270 17706 18048 31038 31038 -0.0403975830483887 KEQILKKDPL 10 Unmodified _KEQILKKDPL_ 0 0 0 REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.5821228027344 3 404.583451 1210.72852 NaN NaN NaN NaN NaN NaN NaN 79.091 1 72.915 72.415 73.415 -6.1757 0 0 0 0.9731 1 51814 51814 3.5871 0.85186 1 + 26238 28678 17707 18049 31039 31039 0.13158805154080255 KEREEFLIPIY 11 Unmodified _KEREEFLIPIY_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 719.3972778320312 2 718.892835 1435.77112 1.1851 0.00085196 -0.10642 -7.6503E-05 1.0787 0.00077546 718.8926240820447 95.671 0.27884 89.495 89.351 89.63 -6.1757 25 17 2 0 0 0 0.65846 1 63326 63326 8.1555 0 1 22294000 26239 10934 17708 18050 31040 31040 0.07066155491679638 KERKFVIFDLH 11 Unmodified _KERKFVIFDLH_ 0 0 0 ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.940185546875 3 477.94175 1430.80342 -0.37173 -0.00017766 -2.1795 -0.0010417 -2.5512 -0.0012193 477.94053121272094 19.534 0.067783 19.563 19.506 19.574 0.028357 10 7 2 0 0 0 0.74046 1 9860 9860 0.45452 0.087843 1 324030 26240 8774 17709 18051 31041 31041 0.10524987685312226 KERKFVIFDLH 11 Unmodified _KERKFVIFDLH_ 0 0 0 ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 477.94175 1430.80342 -0.37173 -0.00017766 -2.1795 -0.0010417 -2.5512 -0.0012193 477.94053121272094 19.534 0.067783 19.563 19.506 19.574 0.028357 0 0 NaN 0.45452 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 324030 26241 8774 17709 18051 0.10524987685312226 KERKKEKKRKK 11 Unmodified _KERKKEKKRKK_ 0 0 0 ENST00000501897.1_1_8:22925813-22938545:+|nuORF ENST00000501897.1_1_8:22925813-22938545:+|nuORF ENST00000501897.1_1_8:22925813-22938545:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.2690734863281 3 495.994848 1484.96271 NaN NaN NaN NaN NaN NaN NaN 51.159 1 45.51 45.01 46.01 -5.649 0 0 0 0.94293 1 32169 32169 0.40827 0 1 26242 14448 17710 18052 31042 31042 0.23963121033261814 KERLEDLNF 9 Unmodified _KERLEDLNF_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L MSMS AL20221201_MKP_PDAC_01 4 582.304931640625 2 582.306395 1162.59824 NaN NaN NaN NaN NaN NaN NaN 93.375 1 87.2 86.7 87.7 -6.1757 0 0 0 0.41346 1 61799 61799 19.257 1.1106 1 26243 9710;14136 17711 18053 31043 31043 0.023442091550805344 KERMLSGNKF 10 Unmodified _KERMLSGNKF_ 0 0 0 REV__nc|ENSG00000093217|O75191-2|XYLB REV__nc|ENSG00000093217|O75191-2|XYLB MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3237915039062 2 605.324065 1208.63358 0.47749 0.00028904 -1.5769 -0.00095453 -1.0994 -0.00066549 605.3231352923276 34.761 0.32876 30.666 30.473 30.801 -4.0951 34 19 2 0 0 0 0.20962 1 20138 20138 32.786 1.5173 1 13380000 + 26244 17926 17712 18054 31044 31044 0.03760548411241871 KERQLRLWWRY 11 Unmodified _KERQLRLWWRY_ 0 0 0 REV__ENST00000522204.1_1_8:134478135-134488174:-|nuORF REV__ENST00000522204.1_1_8:134478135-134488174:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 817.459228515625 2 817.457333 1632.90011 NaN NaN NaN NaN NaN NaN NaN 73.635 1 67.459 66.959 67.959 -6.1757 0 0 0 0.94337 1 48151 48151 0.35063 0.35063 1 + 26245 17025 17713 18055 31045 31045 0.10897974965109825 KERYLENREYY 11 Unmodified _KERYLENREYY_ 0 0 0 REV__ENSG00000091009|ENST00000265271|RBM27 REV__ENSG00000091009|ENST00000265271|RBM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 782.3828735351562 2 781.88353 1561.75251 -0.28011 -0.00021901 -0.45125 -0.00035283 -0.73136 -0.00057184 781.8836871944561 65.903 0.22604 65.419 65.314 65.54 -0.48428 20 9 3 0 0 0 0.69316 1 35984 35984 4.897 3.4151 1 4753800 + 26246 17877 17714 18056 31046 31046 -0.0059000615021886915 KESELHQK 8 Unmodified _KESELHQK_ 0 0 0 REV__ENSG00000174744|ENST00000359957|BRMS1 REV__ENSG00000174744|ENST00000359957|BRMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.28759765625 2 499.766906 997.519259 0.76691 0.00038328 0.33786 0.00016885 1.1048 0.00055213 499.7670344132238 31.801 0.395 28.105 27.927 28.322 -3.6958 47 21 3 0 0 0 8.7369 1 18014 18014 11.64 0 1 42023000 + 26247 22814 17715 18057 31047 31047 0.02039981920813716 KESLGYEMEL 10 Unmodified _KESLGYEMEL_ 0 0 0 REV__ENSG00000096060|ENST00000357266|FKBP5 REV__ENSG00000096060|ENST00000357266|FKBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8572998046875 3 400.193523 1197.55874 0.1331 5.3267E-05 0.92179 0.0003689 1.0549 0.00042216 400.194020993991 25.967 0.80646 23.016 22.754 23.56 -2.9511 132 48 4 0 0 0 0.6606 1 14493 14493 3.8763 0.28927 1 400020000 + 26248 17956 17716 18058 31048 31048 -0.03213678910651652 KESSKRKEEF 10 Unmodified _KESSKRKEEF_ 0 0 0 REV__nc|ENSG00000005700|Q9P2D0-2|IBTK REV__nc|ENSG00000005700|Q9P2D0-2|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2266540527344 3 423.226215 1266.65681 0.07529 3.1865E-05 0.85709 0.00036274 0.93238 0.00039461 423.2265543457554 29.01 0.13479 29.04 28.967 29.102 0.030106 8 5 2 0 0 0 0.71042 1 15145 15145 1.7423 0 1 1753800 + 26249 16973 17717 18059 31049 31049 0.034152657295635436 KETGRVYVY 9 Unmodified _KETGRVYVY_ 0 0 0 ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2018737792969 3 372.201229 1113.58186 -0.33134 -0.00012332 0.4687 0.00017445 0.13737 5.1128E-05 372.2014413915087 35.013 1.2544 34.791 34.099 35.353 -0.2224 92 56 2 0 0 0 0.55144 1 18338 18338 2.4985 0.21571 1 34936000 26250 5465 17718 18060 31050 31050 0.029611279890104925 KETIEERDKRQ 11 Unmodified _KETIEERDKRQ_ 0 0 0 ENST00000461395.5_1_2:220378960-220396865:+|nuORF ENST00000461395.5_1_2:220378960-220396865:+|nuORF ENST00000461395.5_1_2:220378960-220396865:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.3823852539062 2 716.381154 1430.74776 0.5152 0.00036908 1.2997 0.00093108 1.8149 0.0013002 716.3821213904656 43.028 0.36034 38.269 38.079 38.439 -4.7587 60 23 3 0 0 0 0.61059 2 26116 25979;26116 10.8 3.1906 1 35762000 26251 13660 17719 18061 31051;31052 31052 0.049611097070282995 KETKSETYPLC 11 Unmodified _KETKSETYPLC_ 0 0 0 REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.5488586425781 3 433.548078 1297.6224 0.68452 0.00029677 0.87509 0.00037939 1.5596 0.00067616 433.548517443658 48.098 0.31234 42.864 42.675 42.988 -5.2339 34 18 3 0 0 0 0.46131 1 29898 29898 11.065 0 1 22376000 + 26252 26015 17720 18062 31053 31053 -0.01450318473553125 KETRDQEYKEK 11 Unmodified _KETRDQEYKEK_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2482604980469 3 485.247567 1452.72087 0.86193 0.00041825 -2.148 -0.0010423 -1.286 -0.00062404 485.2467699536477 35.157 0.32537 31.061 30.898 31.223 -4.0951 47 18 3 0 0 0 0.66968 1 20438 20438 8.7518 2.1283 1 33251000 + 26253 22400 17721 18063 31054 31054 0.012620010958244166 KETSLYQLQF 10 Unmodified _KETSLYQLQF_ 0 0 0 nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;ENSG00000141255|ENST00000572969|SPATA22 nc|ENSG00000141255|Q8NHS9-3|SPATA22 nc|ENSG00000141255|Q8NHS9-3|SPATA22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.8313598632812 2 628.829703 1255.64485 0.31127 0.00019574 0.24705 0.00015535 0.55832 0.00035109 628.8298873323197 83.225 0.254 82.727 82.583 82.837 -0.49751 21 9 3 0 0 0 0.46514 1 45551 45551 18.146 1.9972 1 1156000 26254 5309 17722 18064 31055 31055 0.027256489863475508 KEVGEGVI 8 Unmodified _KEVGEGVI_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|13|2|sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|13|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7346496582031 2 415.734543 829.454533 0.40179 0.00016704 0.37965 0.00015783 0.78144 0.00032487 415.73463703135434 53.844 0.42651 53.844 53.685 54.111 0 62 19 4 0 0 0 0.36356 1 29935 29935 48.346 3.9388 1 59270000 + 26255 29402 17723 18065 31056 31056 0.03298407114823476 KEVKVFEFF 9 Unmodified _KEVKVFEFF_ 0 0 0 ENSG00000188211|ENST00000338965|NCR3LG1 ENSG00000188211|ENST00000338965|NCR3LG1 ENSG00000188211|ENST00000338965|NCR3LG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5495300292969 3 391.549859 1171.62775 NaN NaN NaN NaN NaN NaN NaN 36.274 1 36.274 35.774 36.774 0 0 0 0 0.46232 1 19229 19229 16.566 10.374 1 26256 9640 17724 18066 31057 31057 0.048797731712284076 KEVKVFEFF 9 Unmodified _KEVKVFEFF_ 0 0 0 ENSG00000188211|ENST00000338965|NCR3LG1 ENSG00000188211|ENST00000338965|NCR3LG1 ENSG00000188211|ENST00000338965|NCR3LG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8843688964844 3 391.549859 1171.62775 -0.4068 -0.00015928 0.25291 9.9028E-05 -0.15388 -6.0254E-05 391.5498979159082 36.586 0.21455 36.337 36.212 36.427 -0.2497 23 9 3 0 0 0 0.10247 1 19209 19209 30.703 2.2089 1 8298000 26257 9640 17724 18066 31058 31058 0.048797731712284076 KEVPEDAAWE 10 Unmodified _KEVPEDAAWE_ 0 0 0 REV__ENSG00000108602|ENST00000225740|ALDH3A1 REV__ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.3025512695312 2 587.274761 1172.53497 1.0605 0.00062279 0.42264 0.00024821 1.4831 0.000871 587.275069228302 61.611 0.48978 55.436 55.147 55.637 -6.1757 39 24 2 0 0 0 0.23343 1 39616 39616 10.8 1.4164 1 38720000 + 26258 18622 17725 18067 31059 31059 -0.04439776352796798 KEWAKWTKEEL 11 Unmodified _KEWAKWTKEEL_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 724.8839721679688 2 724.382634 1446.75072 0.13676 9.9068E-05 -0.67881 -0.00049172 -0.54205 -0.00039265 724.3819913466355 65.749 0.46132 59.573 59.362 59.824 -6.1757 61 27 3 0 0 0 0.63851 1 42600 42600 9.3831 0.63772 1 38160000 26259 8133 17726 18068 31060 31060 0.04520984831856367 KEWEHKEEL 9 Unmodified _KEWEHKEEL_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2072143554688 3 409.87166 1226.59315 0.66209 0.00027137 1.6738 0.00068603 2.3359 0.0009574 410.2067797313207 40.666 0.20454 40.363 40.214 40.418 -0.30304 12 9 2 0 0 0 0.54213 1 21502 21502 4.897 1.9018 1 5329700 + 26260 17558 17727 18069 31061 31061 -0.011080947075242875 KEWLYSIIK 9 Unmodified _KEWLYSIIK_ 0 0 0 REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8973083496094 3 393.897258 1178.66995 -0.45474 -0.00017912 -0.051725 -2.0374E-05 -0.50647 -0.0001995 393.89719379195446 55.848 0.29038 55.779 55.548 55.839 -0.068741 18 14 2 0 0 0 0.40476 1 30362 30362 8.4443 1.8209 1 4197300 + 26261 20588 17728 18070 31062 31062 0.08775748579591891 KEYEVKVI 8 Unmodified _KEYEVKVI_ 0 0 0 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7606201171875 2 504.292225 1006.5699 0.045901 2.3148E-05 1.0031 0.00050585 1.049 0.000529 504.29279065696153 84.739 0.44215 84.239 84.02 84.462 -0.49962 57 19 4 0 0 0 0.80624 1 46283 46283 2.8892 0 1 5029900 26262 8797 17729 18071 31063 31063 0.06687511245809219 KEYKSTSSLF 10 Unmodified _KEYKSTSSLF_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5429077148438 3 397.208161 1188.60265 0.03736 1.484E-05 1.3406 0.0005325 1.378 0.00054733 397.20868990751933 24.158 0.20189 24.179 24.063 24.265 0.021185 16 7 3 0 0 0 0.56348 1 12449 12449 11.518 0 1 8643900 + 26263 19938 17730 18072 31064 31064 0.01589673577996109 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2708129882812 2 584.27149 1166.52843 0.13661 7.9818E-05 0.4621 0.00026999 0.59871 0.00034981 584.2717689936323 63.598 0.32351 63.598 63.456 63.779 0 43 15 4 0 0 0 0.15471 1 35467 35467 27.629 0.74515 1 9790400 26264 7221 17731 18073 31065 31065 -0.0481766951352256 KFAEEFYSF 9 Unmodified _KFAEEFYSF_ 0 0 0 nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L nc|ENSG00000164649|Q96GN5-5|CDCA7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2701416015625 2 584.27149 1166.52843 0.51234 0.00029935 0.1963 0.0001147 0.70865 0.00041404 584.2716686034471 64.087 0.4342 63.602 63.432 63.867 -0.48512 80 21 5 0 0 0 0.19127 2 34932 34932;35035 24.021 8.1734 1 57897000 26265 7221 17731 18073 31066;31067 31066 -0.0481766951352256 KFALCSKMLI 10 Unmodified _KFALCSKMLI_ 0 0 0 REV__ENSG00000171243|ENST00000307068|SOSTDC1 REV__ENSG00000171243|ENST00000307068|SOSTDC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5419006347656 3 385.220579 1152.63991 1.6073 0.00061917 2.3601 0.00090917 3.9674 0.0015283 385.55563683854854 21.456 0.088367 18.721 18.669 18.757 -2.7348 11 8 2 0 0 0 0.23693 1 11462 11462 3.3196 0 1 2239900 + 26266 22549 17732 18074 31068 31068 0.06969350318422585 KFAPPVQESF 10 Unmodified _KFAPPVQESF_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.302001953125 2 575.300581 1148.58661 0.73242 0.00042136 1.2376 0.00071201 1.9701 0.0011334 575.3017647169486 49.405 0.17687 49.405 49.333 49.51 0 17 7 3 0 0 0 0.035244 1 27206 27206 65.474 27.5 1 3677400 26267 1335 17733 18075 31069 31069 0.018260121317553057 KFAPPVQESF 10 Unmodified _KFAPPVQESF_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3006591796875 2 575.300581 1148.58661 0.67256 0.00038692 -0.030294 -1.7428E-05 0.64226 0.00036949 575.300247923153 55.839 0.36993 49.918 49.706 50.076 -5.9211 53 21 3 0 0 0 0.11654 1 35546 35546 43.982 25.836 1 68431000 26268 1335 17733 18075 31070 31070 0.018260121317553057 KFAPPVQESF 10 Unmodified _KFAPPVQESF_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 575.300581 1148.58661 0.94739 0.00054503 -0.3378 -0.00019434 0.60959 0.00035069 575.3003215875214 49.892 0.29381 49.499 49.333 49.627 -0.3923 0.018051 -0.00027643 NaN 65.474 44 14 4 NaN NaN NaN NaN 0 NaN NaN 0 13570000 26269 1335 17733 18075 0.018260121317553057 KFAPPVQESF 10 Unmodified _KFAPPVQESF_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 575.300581 1148.58661 0.9562 0.0005501 -0.53935 -0.00031029 0.41685 0.00023982 575.2990262424975 49.588 0.097004 49.54 49.471 49.568 -0.048824 0.058372 -0.00050833 NaN 65.474 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1364100 26270 1335 17733 18075 0.018260121317553057 KFASFIDKVRF 11 Unmodified _KFASFIDKVRF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q8VED5;ENSG00000185640|ENST00000330553|KRT79;CON__Q5XKE5;ENSG00000139648|ENST00000267119|KRT71;nc|ENSG00000186049|Q86Y46-2|KRT73;CON__Q6IME9;CON__Q3SY84;CON__Q9R0H5;CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;CON__Q3TTY5;ENSG00000186049|ENST00000305748|KRT73;CON__P07744;CON__Q7RTS7;ENSG00000170484|ENST00000305620|KRT74;CON__Q32MB2;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1 CON__P05787;CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000186081|ENST00000252242|KRT5;nc|ENSG00000170486|Q14CN4-3|KRT72 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.2598876953125 3 453.259079 1356.75541 1.1345 0.00051423 1.0019 0.0004541 2.1364 0.00096833 453.25969758097307 57.588 0.17576 57.522 57.418 57.593 -0.066036 12 8 2 0 0 0 0.47711 1 31361 31361 17.572 14.941 1 1217800 + 26271 165;199;177;9374;170;9329;211;185 17734 18076 31071 31071 0.09129913765241326 KFAVRRFF 8 Unmodified _KFAVRRFF_ 0 0 0 ENSG00000071242|ENST00000265678|RPS6KA2 ENSG00000071242|ENST00000265678|RPS6KA2 ENSG00000071242|ENST00000265678|RPS6KA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8786315917969 3 357.546783 1069.61852 -0.0021263 -7.6024E-07 0.41677 0.00014901 0.41464 0.00014825 357.5487017431087 38.182 0.3687 37.911 37.739 38.108 -0.27133 41 16 4 0 0 0 0.80068 1 20139 20139 6.2058 3.2105 1 3685500 26272 1054 17735 18077 31072 31072 0.08649469396209497 KFCGGAGH 8 Unmodified _KFCGGAGH_ 0 0 0 REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.6789245605469 2 388.679048 775.343543 -0.018051 -7.016E-06 -2.587 -0.0010055 -2.605 -0.0010125 388.6777666213726 69.947 0.29592 69.468 69.29 69.586 -0.47903 20 13 2 0 0 0 0.81107 1 38210 38210 0 0 1 2118600 + 26273 28891 17736 18078 31073 31073 -0.05311511074273767 KFCGGAGH 8 Unmodified _KFCGGAGH_ 0 0 0 REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 388.679048 775.343543 -0.018051 -7.016E-06 -2.587 -0.0010055 -2.605 -0.0010125 388.6777666213726 69.947 0.29592 69.468 69.29 69.586 -0.47903 -0.071487 0.00012149 NaN 0 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2118600 + 26274 28891 17736 18078 -0.05311511074273767 KFCGGAGH 8 Unmodified _KFCGGAGH_ 0 0 0 REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF REV__ENST00000564278.1_1_16:56873384-56878518:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 388.679048 775.343543 0.27966 0.0001087 -2.786 -0.0010829 -2.5063 -0.00097416 388.67778941638073 69.58 0.4172 69.611 69.409 69.826 0.030914 0.071487 -3.3203E-05 NaN 0 57 23 3 NaN NaN NaN NaN 0 NaN NaN 0 26477000 + 26275 28891 17736 18078 -0.05311511074273767 KFCQIRGNER 10 Unmodified _KFCQIRGNER_ 0 0 0 REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2198486328125 3 417.552268 1249.63497 -0.0075887 -3.1687E-06 3.3199 0.0013862 3.3124 0.0013831 417.55366013747073 18.973 0.087875 18.979 18.92 19.008 0.0060463 6 4 2 0 0 0 0.23993 1 9639 9639 1.7423 0.54893 1 606210 + 26276 20789 17737 18079 31074 31074 0.020141825000109748 KFDADPVEL 9 Unmodified _KFDADPVEL_ 0 0 0 ENST00000433031.1_1_7:57216803-57217046:-|nuORF;ENSG00000125772|ENST00000379019|GPCPD1 ENST00000433031.1_1_7:57216803-57217046:-|nuORF;ENSG00000125772|ENST00000379019|GPCPD1 ENSG00000125772|ENST00000379019|GPCPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.262939453125 2 517.263665 1032.51278 0.83899 0.00043398 -1.4518 -0.00075097 -0.61283 -0.00031699 517.2632989008256 51.125 0.26423 51.125 51.014 51.278 0 24 12 3 0 0 0 0.044296 1 28199 28199 47.594 19.966 1 11657000 26277 3880;13284 17738 18080 31075 31075 -0.00217956030564892 KFDDGAVFL 9 Unmodified _KFDDGAVFL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2610778808594 2 506.260925 1010.5073 0.41151 0.00020833 -0.61579 -0.00031175 -0.20428 -0.00010342 506.26047124989174 61.609 0.73586 61.609 61.215 61.951 0 112 33 6 0 0 0 0.07087 2 34303 34303;34412 39.95 16.429 1 185930000 26278 802 17739 18081 31076;31077 31076 0.0024636517761109644 KFDDGAVFL 9 Unmodified _KFDDGAVFL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2610168457031 2 506.260925 1010.5073 0.14164 7.1704E-05 0.38772 0.00019629 0.52936 0.00026799 506.2611315297634 62.006 0.52442 61.519 61.222 61.747 -0.48764 75 24 4 0 0 0 0.05483 1 33754 33754 43.772 15.286 1 54960000 26279 802 17739 18081 31078 31078 0.0024636517761109644 KFDDGAVFL 9 Unmodified _KFDDGAVFL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2605895996094 2 506.260925 1010.5073 0.41157 0.00020836 0.31956 0.00016178 0.73112 0.00037014 506.26123792142084 61.631 0.27549 61.598 61.456 61.731 -0.032787 33 13 3 0 0 0 0.032796 1 33625 33625 53.833 9.9745 1 7064700 26280 802 17739 18081 31079 31079 0.0024636517761109644 KFDDGAVFL 9 Unmodified _KFDDGAVFL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.261962890625 2 506.260925 1010.5073 0.55333 0.00028013 -0.13991 -7.0833E-05 0.41342 0.0002093 506.2609781957918 67.844 1.3064 61.668 61.385 62.692 -6.1757 153 75 4 0 0 0 0.028475 3 44679 44186;44329;44679 56.177 18.203 1 302740000 26281 802 17739 18081 31080;31081;31082 31082 0.0024636517761109644 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.82275390625 2 608.821681 1215.62881 0.17595 0.00010712 0.20604 0.00012544 0.38199 0.00023257 609.3226399058653 68.185 0.21246 68.185 68.099 68.312 0 16 9 2 0 0 0 0.4887 2 38017 37984;38017 8.1555 4.2111 1 540310 26282 3760 17740 18082 31083;31084 31084 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8211059570312 2 608.821681 1215.62881 0.37753 0.00022985 -0.31637 -0.00019261 0.061159 3.7235E-05 608.821316299666 68.648 0.58701 68.168 67.967 68.554 -0.48071 91 26 5 0 0 0 0.00049731 3 37461 37461;37559;37680 143.91 102.07 1 132890000 26283 3760 17740 18082 31085;31086;31087 31085 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2171020507812 3 406.21688 1215.62881 0.37158 0.00015094 -0.019533 -7.9347E-06 0.35204 0.00014301 406.21683737622084 68.662 0.45285 68.181 67.99 68.443 -0.48071 69 20 5 0 0 0 0.07087 2 37571 37469;37571 37.075 19.632 1 46048000 26284 3760 17740 18082 31088;31089 31089 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8230590820312 2 608.821681 1215.62881 0.55698 0.0003391 -1.0132 -0.00061686 -0.45623 -0.00027776 608.8208748714994 68.113 0.82385 68.138 67.877 68.701 0.025146 158 40 6 0 0 0 0.0025703 5 37328 37328;37344;37434;37545;37648 128.93 92.805 1 992780000 26285 3760 17740 18082 31090;31091;31092;31093;31094 31090 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2173461914062 3 406.21688 1215.62881 0.20817 8.4564E-05 -0.1103 -4.4806E-05 0.097874 3.9758E-05 406.2167853255511 68.132 0.70011 68.157 67.921 68.621 0.025154 114 34 5 0 0 0 0.085319 3 37340 37340;37445;37562 33.445 16.002 1 285960000 26286 3760 17740 18082 31095;31096;31097 31095 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8219604492188 2 608.821681 1215.62881 -0.042544 -2.5901E-05 0.20797 0.00012662 0.16543 0.00010072 608.8216275022809 93.362 0.7858 87.187 86.683 87.469 -6.1757 218 54 5 0 0 0 0.00049731 4 61453 61453;61581;61712;61839 143.91 101.81 1 722260000 26287 3760 17740 18082 31098;31099;31100;31101 31098 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5519714355469 3 406.21688 1215.62881 0.2748 0.00011163 0.61546 0.00025001 0.89026 0.00036164 406.2170965102136 93.363 0.76805 87.187 86.683 87.451 -6.1757 199 53 4 0 0 0 0.023481 4 61459 61459;61595;61725;61848 55.235 23.197 1 339490000 26288 3760 17740 18082 31102;31103;31104;31105 31102 0.02961987540129485 KFDDIRIYF 9 Unmodified _KFDDIRIYF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 608.8215942382812 2 608.821681 1215.62881 NaN NaN NaN NaN NaN NaN NaN 93.633 1 87.457 86.957 87.957 -6.1757 0 0 0 0.061161 1 61987 61987 53.404 32.95 1 26289 3760 17740 18082 31106 31106 0.02961987540129485 KFDEGRNNF 9 Unmodified _KFDEGRNNF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.8017578125 2 563.767437 1125.52032 -0.11934 -6.728E-05 2.4745 0.001395 2.3552 0.0013278 563.7686932336376 22.273 0.16135 22.273 22.163 22.324 0 13 7 2 0 0 0 0.19758 1 11314 11314 13.042 2.2185 1 1234100 26290 9390 17741 18083 31107 31107 -0.03741803710295244 KFDESMTEDE 10 Unmodified _KFDESMTEDE_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1659851074219 3 410.832543 1229.4758 0.63683 0.00026163 -2.9339 -0.0012054 -2.2971 -0.00094372 411.1651091556975 82.47 0.21022 76.294 76.179 76.39 -6.1757 17 11 2 0 0 0 0.69377 1 54184 54184 3.5871 0 1 5741700 26291 4746 17742 18084 31108 31108 -0.1297604042929379 KFDETEQAL 9 Unmodified _KFDETEQAL_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7643432617188 2 540.764029 1079.5135 -0.94043 -0.00050855 0.47439 0.00025653 -0.46604 -0.00025202 540.7642888045871 32.258 0.1904 32.258 32.164 32.355 0 10 9 2 0 0 0 0.36964 1 16865 16865 13.906 0 1 998560 26292 5730 17743 18085 31109 31109 -0.023071613815318415 KFDEVVSL 8 Unmodified _KFDEVVSL_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7560729980469 2 468.755475 935.496398 0.47143 0.00022099 0.049479 2.3193E-05 0.52091 0.00024418 468.7556103182899 52.651 0.24651 52.651 52.552 52.798 0 24 10 3 0 0 0 0.27285 1 29136 29136 58.679 10.333 1 3154500 26293 9970 17744 18086 31110 31110 0.026069628033383196 KFDFPVSYL 9 Unmodified _KFDFPVSYL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2925415039062 2 558.292225 1114.5699 0.43292 0.0002417 1.0659 0.0005951 1.4988 0.0008368 558.2927714406813 79.922 0.37268 79.979 79.797 80.17 0.057587 37 14 4 0 0 0 0.040683 1 44137 44137 49.554 15.452 1 6559200 26294 4845 17745 18087 31111 31111 0.017195112458011863 KFDFPVSYL 9 Unmodified _KFDFPVSYL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2918090820312 2 558.292225 1114.5699 1.4744 0.00082315 -1.0827 -0.00060447 0.3917 0.00021868 558.2914803742411 97.202 0.26076 91.026 90.895 91.155 -6.1757 39 14 4 0 0 0 0.091924 1 64420 64420 34.932 10.911 1 43573000 26295 4845 17745 18087 31112 31112 0.017195112458011863 KFDFPVSYL 9 Unmodified _KFDFPVSYL_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.292225 1114.5699 1.075 0.00060017 2.3354 0.0013038 3.4104 0.001904 558.2938336846066 80.585 0.34627 80.093 79.88 80.227 -0.49247 0.056699 0.0011018 NaN 49.554 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 694780 26296 4845 17745 18087 0.017195112458011863 KFDHADRTF 9 Unmodified _KFDHADRTF_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5210876464844 3 379.520962 1135.54106 -0.50279 -0.00019082 0.95108 0.00036095 0.44829 0.00017013 379.52135991742813 19.276 0.13987 19.276 19.2 19.34 0 15 8 2 0 0 0 0.15882 1 9623 9623 25.997 13.823 1 2867300 26297 10109 17746 18088 31113 31113 -0.021292133306360483 KFDHADRTF 9 Unmodified _KFDHADRTF_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5211486816406 3 379.520962 1135.54106 1.6571 0.0006289 -1.2283 -0.00046618 0.42876 0.00016272 379.52064679244546 21.157 0.39607 18.464 18.167 18.563 -2.693 40 21 3 0 0 0 0.19361 1 11255 11255 22.775 11.28 1 6710500 26298 10109 17746 18088 31114 31114 -0.021292133306360483 KFDLYQKVI 9 Unmodified _KFDLYQKVI_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.8329467773438 2 577.334424 1152.6543 0.81209 0.00046885 2.0809 0.0012014 2.893 0.0016702 577.3361979501875 64.911 0.81622 58.735 58.45 59.266 -6.1757 57 45 2 0 0 0 0.1176 1 41961 41961 36.127 1.7253 1 8629200 + 26299 21890 17747 18089 31115 31115 0.08407462062541526 KFDNYGKTFI 10 Unmodified _KFDNYGKTFI_ 0 0 0 nc|ENSG00000070748|P28329-2|CHAT;nc|ENSG00000070748|P28329-3|CHAT;ENSG00000070748|ENST00000337653|CHAT nc|ENSG00000070748|P28329-2|CHAT nc|ENSG00000070748|P28329-2|CHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8202514648438 2 616.819138 1231.62372 0.75777 0.00046741 -0.13817 -8.5226E-05 0.6196 0.00038218 616.819448434808 62.562 0.26685 62.074 61.894 62.161 -0.48764 22 12 3 0 0 0 0.40136 1 34088 34088 21.537 1.0834 1 4143700 26300 16046 17748 18090 31116 31116 0.01717683677520654 KFDNYGKTFI 10 Unmodified _KFDNYGKTFI_ 0 0 0 nc|ENSG00000070748|P28329-2|CHAT;nc|ENSG00000070748|P28329-3|CHAT;ENSG00000070748|ENST00000337653|CHAT nc|ENSG00000070748|P28329-2|CHAT nc|ENSG00000070748|P28329-2|CHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8216552734375 2 616.819138 1231.62372 0.53711 0.0003313 0.99802 0.0006156 1.5351 0.0009469 616.8197368230581 62.164 0.23596 62.131 61.985 62.22 -0.032787 32 11 3 0 0 0 0.13297 1 33928 33928 41.956 3.78 1 24700000 26301 16046 17748 18090 31117 31117 0.01717683677520654 KFDPHLPPT 9 Unmodified _KFDPHLPPT_ 0 0 0 REV__ENSG00000180644|ENST00000441259|PRF1 REV__ENSG00000180644|ENST00000441259|PRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2822265625 2 526.282192 1050.54983 0.18815 9.9022E-05 0.24077 0.00012671 0.42893 0.00022574 526.2823547119029 93.359 0.74875 87.184 86.683 87.432 -6.1757 136 52 3 0 0 0 0.14602 1 61726 61726 28.487 1.6032 1 138470000 + 26302 23161 17749 18091 31118 31118 0.026577603058285604 KFDPMGKYF 9 Oxidation (M) _KFDPM(Oxidation (M))GKYF_ KFDPM(1)GKYF KFDPM(59)GKYF 0 0 1 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7745361328125 2 574.775885 1147.53722 NaN NaN NaN NaN NaN NaN NaN 39.064 1 38.777 38.277 39.277 -0.28687 0 0 0 0.046065 1 20592 20592 59.368 26.583 1 26303 735 17750 18092 31119 31119 114 -0.030650191486984113 KFDPMGKYF 9 Oxidation (M) _KFDPM(Oxidation (M))GKYF_ KFDPM(1)GKYF KFDPM(59)GKYF 0 0 1 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.775146484375 2 574.775885 1147.53722 0.25028 0.00014385 -1.3172 -0.0007571 -1.0669 -0.00061324 574.7752624582511 38.619 0.24019 38.63 38.498 38.738 0.011452 23 11 3 0 0 0 0.024189 1 20526 20526 59.368 19.419 1 5234600 26304 735 17750 18092 31120 31120 114 -0.030650191486984113 KFDPMGKYF 9 Oxidation (M) _KFDPM(Oxidation (M))GKYF_ KFDPM(1)GKYF KFDPM(50)GKYF 0 0 1 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7766723632812 2 574.775885 1147.53722 NaN NaN NaN NaN NaN NaN NaN 38.335 1 38.352 37.852 38.852 0.01704 0 0 0 0.076083 1 20381 20381 49.554 20.473 1 26305 735 17750 18092 31121 31121 114 -0.030650191486984113 KFDPMGKYF 9 Unmodified _KFDPMGKYF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3;ENST00000511074.1_1_5:177305805-177309842:+|nuORF;ENST00000507037.5_1_5:177305712-177377317:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.779052734375 2 566.778428 1131.5423 0.30874 0.00017499 0.4039 0.00022892 0.71264 0.00040391 566.7787957101198 51.742 0.1987 51.683 51.573 51.772 -0.058918 23 9 3 0 0 0 0.018061 1 28011 28011 65.474 36.392 1 3446700 26306 735 17750 18093 31122 31122 -0.01820715286066843 KFDPVGEIL 9 Unmodified _KFDPVGEIL_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2851257324219 2 509.2844 1016.55425 0.54979 0.00028 -0.38156 -0.00019432 0.16823 8.5675E-05 509.28413402297565 66.575 0.30434 66.575 66.421 66.725 0 23 13 2 0 0 0 0.1685 1 37095 37095 26.268 3.1197 1 3549900 26307 4099 17751 18094 31123 31123 0.04663224728778914 KFDREPFL 8 Unmodified _KFDREPFL_ 0 0 0 REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2813720703125 2 526.282192 1050.54983 0.26846 0.00014129 -1.0249 -0.00053941 -0.75648 -0.00039812 526.2814694476949 68.633 0.29628 68.153 67.99 68.286 -0.48071 39 13 4 0 0 0 0.54555 1 37480 37480 30.637 5.2372 1 15289000 + 26308 22961 17752 18095 31124 31124 0.026577603058512977 KFDREPFL 8 Unmodified _KFDREPFL_ 0 0 0 REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF REV__ENST00000560252.5_1_15:85191115-85197505:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.28271484375 2 526.282192 1050.54983 0.18815 9.9022E-05 0.24077 0.00012671 0.42893 0.00022574 526.2823547119029 93.359 0.74875 87.184 86.683 87.432 -6.1757 136 52 3 0 0 0 0.62219 1 61856 61856 24.021 3.5669 1 138470000 + 26309 22961 17752 18095 31125 31125 0.026577603058512977 KFDSHSPSLFP 11 Unmodified _KFDSHSPSLFP_ 0 0 0 REV__ENSG00000188816|ENST00000339992|HMX2 REV__ENSG00000188816|ENST00000339992|HMX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.314697265625 2 631.31422 1260.61389 0.16076 0.00010149 0.6131 0.00038706 0.77386 0.00048855 631.3143800217882 77.071 0.36243 77.122 76.934 77.296 0.05011 27 14 3 0 0 0 0.42108 1 42538 42538 20.415 2.2682 1 3981700 + 26310 23733 17753 18096 31126 31126 -0.005995043278744561 KFDSHSPSLFP 11 Unmodified _KFDSHSPSLFP_ 0 0 0 REV__ENSG00000188816|ENST00000339992|HMX2 REV__ENSG00000188816|ENST00000339992|HMX2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 631.31422 1260.61389 0.16076 0.00010149 0.6131 0.00038706 0.77386 0.00048855 631.3143800217882 77.071 0.36243 77.122 76.934 77.296 0.05011 -0.01583 -0.00048377 NaN 20.415 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3981700 + 26311 23733 17753 18096 -0.005995043278744561 KFDVTWKQ 8 Unmodified _KFDVTWKQ_ 0 0 0 nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|36|1|sense nc|ENSG821|P63135|ERVK-7_pol nc|ENSG821|P63135|ERVK-7_pol MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2828979492188 2 526.282192 1050.54983 0.39607 0.00020845 -0.43754 -0.00023027 -0.041468 -2.1824E-05 526.2818271103529 68.13 0.58234 68.155 67.755 68.337 0.025146 83 28 5 0 0 0 0.48583 1 37354 37354 36.127 3.8215 1 95383000 26312 16657 17754 18097 31127 31127 0.026577603058285604 KFDVTWKQ 8 Unmodified _KFDVTWKQ_ 0 0 0 nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG844|Q9WJR5|ERVK-19_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG801|P63132|HERVK_113_pro;HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|36|1|sense nc|ENSG821|P63135|ERVK-7_pol nc|ENSG821|P63135|ERVK-7_pol MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.282192 1050.54983 0.26846 0.00014129 -1.0249 -0.00053941 -0.75648 -0.00039812 526.2814694476949 68.633 0.29628 68.153 67.99 68.286 -0.48071 -0.0013315 -0.00050356 NaN 36.127 39 13 4 NaN NaN NaN NaN 0 NaN NaN 0 15289000 26313 16657 17754 18097 0.026577603058285604 KFEARFFHL 9 Unmodified _KFEARFFHL_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8855590820312 3 398.885464 1193.63456 0.61876 0.00024681 -0.073933 -2.9491E-05 0.54482 0.00021732 398.8853280204712 52.583 0.26169 52.524 52.388 52.65 -0.058918 29 12 3 0 0 0 0.45045 1 28483 28483 14.405 7.3037 1 3910900 26314 1389 17755 18098 31128 31128 0.04549130842474369 KFEENTYCF 9 Carbamidomethyl (C) _KFEENTYC(Carbamidomethyl (C))F_ KFEENTYC(1)F KFEENTYC(60)F 0 1 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.7642211914062 2 619.263339 1236.51212 0.75848 0.0004697 -0.19527 -0.00012092 0.56321 0.00034877 619.263126019998 49.347 0.34705 43.951 43.795 44.143 -5.3961 43 21 3 0 0 0 0.023481 2 30883 30763;30883 60.074 25.672 1 50501000 26315 8697 17756 18099 31129;31130 31130 828 -0.09667118741958802 KFEPLQPQL 9 Unmodified _KFEPLQPQL_ 0 0 0 REV__ENST00000357022.6_2_2:61405240-61406187:+|nuORF REV__ENST00000357022.6_2_2:61405240-61406187:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8126831054688 2 550.310949 1098.60735 0.60993 0.00033565 0.65843 0.00036234 1.2684 0.000698 550.8129126861531 72.153 0.24431 71.677 71.549 71.793 -0.47609 25 10 3 0 0 0 0.23158 1 39491 39491 20.454 0 1 1889300 + 26316 25838 17757 18100 31131 31131 0.06198602511426543 KFEQFFKKM 9 Unmodified _KFEQFFKKM_ 0 0 0 REV__ENSG00000167671|ENST00000301281|UBXN6 REV__ENSG00000167671|ENST00000301281|UBXN6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 616.797607421875 2 616.828452 1231.64235 0.4767 0.00029404 -2.7456 -0.0016936 -2.2689 -0.0013995 616.8263635144248 68.164 0.315 61.988 61.799 62.114 -6.1757 23 17 2 0 0 0 0.18118 1 44458 44458 19.257 4.4187 1 23171000 + 26317 22239 17758 18101 31132 31132 0.03579522047721184 KFFEEVLLF 9 Unmodified _KFFEEVLLF_ 0 0 0 ENSG00000143155|ENST00000367833|TIPRL;nc|ENSG00000143155|O75663-2|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 586.82470703125 2 586.323525 1170.6325 0.74858 0.00043891 -1.6952 -0.00099391 -0.94658 -0.000555 586.8241333520327 100.7 0.083801 94.52 94.472 94.556 -6.1757 7 5 2 0 0 0 0.062282 1 67429 67429 41.84 11.203 1 20350000 26318 5468 17759 18102 31133 31133 0.05400657313998636 KFFGAENSVNL 11 Unmodified _KFFGAENSVNL_ 0 0 0 nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH nc|ENSG00000107537|O14832-2|PHYH nc|ENSG00000107537|O14832-2|PHYH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.3145141601562 2 613.31422 1224.61389 0.52457 0.00032173 -0.57791 -0.00035444 -0.053337 -3.2712E-05 613.3138843050183 53.824 0.22223 53.358 53.265 53.487 -0.46664 15 10 2 0 0 0 0.20054 1 29157 29157 32.037 12.676 1 1921900 26319 2498 17760 18103 31134 31134 0.010564956721509589 KFFGNEHI 8 Unmodified _KFFGNEHI_ 0 0 0 REV__METTL2A|p.K83N|1|0.2|ENSG00000087995|chr17:62426345-62426345|A/C|missense_variant REV__METTL2A|p.K83N|1|0.2|ENSG00000087995|chr17:62426345-62426345|A/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2541809082031 2 496.253434 990.492316 NaN NaN NaN NaN NaN NaN NaN 58.769 1 58.708 58.208 59.208 -0.060719 0 0 0 0.9489 1 32020 32020 10.824 2.9138 1 + 26320 17796 17761 18104 31135 31135 -0.003310818997192655 KFFPSVPLFGF 11 Unmodified _KFFPSVPLFGF_ 0 0 0 ENSG00000167196|ENST00000308275|FBXO22 ENSG00000167196|ENST00000308275|FBXO22 ENSG00000167196|ENST00000308275|FBXO22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3518676757812 2 643.352617 1284.69068 0.81045 0.00052141 -0.55916 -0.00035974 0.25129 0.00016167 643.3516052242973 101.34 0.16421 95.165 95.046 95.211 -6.1757 15 9 3 0 0 0 0.5229 1 68011 68011 15.248 4.4246 1 22380000 26321 7584 17762 18105 31136 31136 0.05972338959259105 KFGAEELFK 9 Unmodified _KFGAEELFK_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.862060546875 3 356.862325 1067.56515 -0.26282 -9.379E-05 0.06781 2.4199E-05 -0.19501 -6.9591E-05 356.862335878899 35.427 0.33 35.427 35.285 35.615 0 51 16 4 0 0 0 0.51218 1 18789 18789 4.1895 0.31317 1 99930000 26322 6281 17763 18106 31137 31137 0.034066271030496864 KFGASRAA 8 Unmodified _KFGASRAA_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.228515625 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 15.655 1 15.641 15.141 16.141 -0.014067 0 0 0 0.97444 1 7695 7695 0.52476 0 1 26323 5349 17764 18107 31138 31138 0.02892379757327035 KFHAIITTF 9 Unmodified _KFHAIITTF_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.20947265625 3 359.874565 1076.60187 0.59181 0.00021298 -0.24856 -8.945E-05 0.34326 0.00012353 359.8742843902775 52.327 0.17808 52.268 52.21 52.388 -0.058918 14 8 2 0 0 0 0.19361 1 28355 28355 23.79 9.3844 1 3177300 26324 8091 17765 18108 31139 31139 0.06662923719591163 KFHDRPVTY 9 Unmodified _KFHDRPVTY_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.205078125 3 388.204974 1161.59309 1.5432 0.00059906 0.50741 0.00019698 2.0506 0.00079604 388.53944613211615 21.657 0.31705 18.922 18.737 19.054 -2.7348 29 19 2 0 0 0 0.41742 1 11636 11636 7.609 2.893 1 2097400 26325 2877 17766 18109 31140 31140 0.018759500831492915 KFHPSIQSF 9 Unmodified _KFHPSIQSF_ 0 0 0 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.1941528320312 3 364.194186 1089.56073 0.091734 3.3409E-05 -1.0148 -0.00036959 -0.92309 -0.00033618 364.19361867485406 38.639 0.19832 38.651 38.559 38.757 0.011456 13 9 2 0 0 0 0.36964 1 20561 20561 9.544 5.6676 1 1690900 26326 1557 17767 18110 31141 31141 0.019531626801381208 KFHPSIQSF 9 Unmodified _KFHPSIQSF_ 0 0 0 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7871704101562 2 545.787641 1089.56073 NaN NaN NaN NaN NaN NaN NaN 38.628 1 38.639 38.139 39.139 0.011452 0 0 0 0.014715 1 20547 20547 85.642 45.692 1 26327 1557 17767 18110 31142 31142 0.019531626801381208 KFHSEVAKF 9 Unmodified _KFHSEVAKF_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8666687011719 3 364.86607 1091.57638 -0.3084 -0.00011252 1.7342 0.00063276 1.4258 0.00052023 364.8666499913867 23.212 0.18017 23.212 23.107 23.287 0 14 8 2 0 0 0 0.55144 1 11823 11823 2.4985 0 1 600790 26328 2134 17768 18111 31143 31143 0.034254491971978496 KFHSEVAKF 9 Unmodified _KFHSEVAKF_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8661499023438 3 364.86607 1091.57638 0.82073 0.00029946 -0.36392 -0.00013278 0.45681 0.00016668 364.865975113235 26.154 0.36898 23.203 23.036 23.405 -2.9511 49 21 3 0 0 0 0.13231 2 14421 14300;14421 34.222 20.316 1 24008000 26329 2134 17768 18111 31144;31145 31145 0.034254491971978496 KFIDKQLEL 9 Unmodified _KFIDKQLEL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5569152832031 3 378.557013 1132.64921 0.019707 7.4603E-06 0.0078506 2.9719E-06 0.027558 1.0432E-05 378.55711605321824 45.615 0.2255 45.615 45.497 45.722 0 26 11 4 0 0 0 0.15882 1 24862 24862 27.223 3.4222 1 10074000 26330 3242 17769 18112 31146 31146 0.0881915819995811 KFIDKQLEL 9 Unmodified _KFIDKQLEL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.331298828125 2 567.331882 1132.64921 0.27896 0.00015826 0.17526 9.943E-05 0.45422 0.00025769 567.3319793334841 45.615 0.17698 45.615 45.527 45.704 0 14 8 2 0 0 0 5.1773E-05 1 24868 24868 143.91 65.181 1 9273900 26331 3242 17769 18112 31147 31147 0.0881915819995811 KFIDKQLEL 9 Unmodified _KFIDKQLEL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3326416015625 2 567.331882 1132.64921 NaN NaN NaN NaN NaN NaN NaN 45.789 1 45.464 44.964 45.964 -0.32425 0 0 0 0.0071931 1 24480 24480 107.1 31.339 1 26332 3242 17769 18112 31148 31148 0.0881915819995811 KFIDKQLEL 9 Unmodified _KFIDKQLEL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3329467773438 2 567.331882 1132.64921 1.065 0.0006042 -0.14709 -8.3449E-05 0.91789 0.00052075 567.3318061983774 51.319 0.35899 45.67 45.43 45.789 -5.649 32 21 2 0 0 0 0.022608 2 32308 32172;32308 64.927 19.455 1 44440000 26333 3242 17769 18112 31149;31150 31150 0.0881915819995811 KFIDKQLEL 9 Unmodified _KFIDKQLEL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5579833984375 3 378.557013 1132.64921 1.4105 0.00053396 0.015915 6.0247E-06 1.4264 0.00053998 378.55690792598347 51.243 0.22511 45.594 45.511 45.737 -5.649 22 13 2 0 0 0 0.094905 1 32209 32209 34.222 5.1401 1 31177000 26334 3242 17769 18112 31151 31151 0.0881915819995811 KFIDNTLYF 9 Unmodified _KFIDNTLYF_ 0 0 0 ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18 ENST00000533858.5_1_11:112021793-112034722:-|nuORF ENST00000533858.5_1_11:112021793-112034722:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8028564453125 2 580.802957 1159.59136 0.58037 0.00033708 -0.40433 -0.00023484 0.17603 0.00010224 580.8026342076803 68.152 0.4687 67.67 67.453 67.921 -0.48218 62 21 4 0 0 0 0.032796 2 37193 37193;37294 53.833 9.9757 1 32947000 26335 6075 17770 18113 31152;31153 31152 0.017948962745094832 KFIDNTLYF 9 Unmodified _KFIDNTLYF_ 0 0 0 ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18 ENST00000533858.5_1_11:112021793-112034722:-|nuORF ENST00000533858.5_1_11:112021793-112034722:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8029174804688 2 580.802957 1159.59136 0.72276 0.00041978 -0.80499 -0.00046754 -0.082227 -4.7758E-05 580.8022241560253 67.649 0.35619 67.667 67.514 67.87 0.018028 45 17 3 0 0 0 0.018301 2 37109 37109;37211 65.235 25.278 1 32301000 26336 6075 17770 18113 31154;31155 31154 0.017948962745094832 KFIDNTLYF 9 Unmodified _KFIDNTLYF_ 0 0 0 ENST00000533858.5_1_11:112021793-112034722:-|nuORF;ENST00000534225.1_1_11:112024279-112034806:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18 ENST00000533858.5_1_11:112021793-112034722:-|nuORF ENST00000533858.5_1_11:112021793-112034722:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8032836914062 2 580.802957 1159.59136 1.0992 0.00063841 -0.52315 -0.00030384 0.57604 0.00033457 580.8025816552654 87.701 0.93996 81.525 80.999 81.939 -6.1757 133 51 3 0 0 0 0.0086722 4 57838 57589;57715;57838;57963 88.954 27.596 1 86579000 26337 6075 17770 18113 31156;31157;31158;31159 31158 0.017948962745094832 KFIDPIYQVW 10 Unmodified _KFIDPIYQVW_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3540649414062 2 654.852981 1307.69141 0.77741 0.00050909 -0.645 -0.00042238 0.13241 8.6708E-05 654.8525283622466 81.277 0.25773 80.785 80.695 80.953 -0.49248 29 13 3 0 0 0 0.32493 2 44472 44472;44575 26.021 14.526 1 4153200 26338 1414 17771 18114 31160;31161 31160 0.04987133608324257 KFIDPIYQVW 10 Unmodified _KFIDPIYQVW_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8497314453125 2 654.852981 1307.69141 0.5572 0.00036488 -1.2507 -0.000819 -0.69347 -0.00045412 654.8519298247455 80.293 0.6553 80.35 80.235 80.89 0.057587 93 29 4 0 0 0 0.03037 4 44350 44350;44462;44567;44674 67.838 36.57 1 56922000 26339 1414 17771 18114 31162;31163;31164;31165 31162 0.04987133608324257 KFIDPIYQVW 10 Unmodified _KFIDPIYQVW_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8540649414062 2 654.852981 1307.69141 1.2243 0.00080175 -0.37767 -0.00024732 0.84666 0.00055444 654.852554796846 98.092 0.26073 91.916 91.781 92.042 -6.1757 66 16 5 0 0 0 0.10406 2 64965 64965;65098 45.74 26.378 1 1831199999.9999998 26340 1414 17771 18114 31166;31167 31166 0.04987133608324257 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7952880859375 2 543.795132 1085.57571 -0.13943 -7.5823E-05 -0.53134 -0.00028894 -0.67078 -0.00036477 543.7947618030239 35.432 0.61168 35.432 35.246 35.858 0 98 30 5 0 0 0 0.0026373 2 18668 18668;18778 128.58 76.949 1 771210000 26341 1793;13923 17772 18115 31168;31169 31168 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8659362792969 3 362.865847 1085.57571 -0.27037 -9.8109E-05 0.12328 4.4733E-05 -0.14709 -5.3375E-05 362.86589131930515 35.447 0.30938 35.447 35.285 35.594 0 49 15 4 0 0 0 0.0038489 2 18685 18685;18790 100.71 54.686 1 75052000 26342 1793;13923 17772 18115 31170;31171 31170 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8656311035156 3 362.865847 1085.57571 -0.4246 -0.00015407 -0.0092891 -3.3707E-06 -0.43389 -0.00015744 362.8658287899775 35.545 0.42174 35.323 35.151 35.573 -0.2224 62 18 4 0 0 0 0.0086209 2 18573 18573;18675 73.196 49.395 1 138570000 26343 1793;13923 17772 18115 31172;31173 31172 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7948608398438 2 543.795132 1085.57571 -0.63269 -0.00034405 -1.3011 -0.00070752 -1.9338 -0.0010516 543.7943223700023 35.566 0.70612 35.343 35.107 35.813 -0.2224 129 31 6 0 0 0 0.0046551 3 18752 18641;18752;18861 118.21 66.58 1 2514200000 26344 1793;13923 17772 18115 31174;31175;31176 31175 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7958374023438 2 543.795132 1085.57571 -0.72621 -0.00039491 1.9248 0.0010467 1.1986 0.00065177 543.7959035977746 36.18 0.30692 35.93 35.825 36.132 -0.2497 20 13 2 0 0 0 0.094905 1 19007 19007 34.222 16.075 1 2105800 26345 1793;13923 17772 18115 31177 31177 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7947387695312 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 37.744 1 37.473 36.973 37.973 -0.27133 0 0 0 0.73776 1 19842 19842 8.1555 3.3995 1 26346 1793;13923 17772 18115 31178 31178 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7950439453125 2 543.795132 1085.57571 -0.029003 -1.5772E-05 -1.0322 -0.0005613 -1.0612 -0.00057707 543.7944166886793 35.292 0.50402 35.319 35.143 35.647 0.027401 93 23 6 0 0 0 1.1731E-06 3 18593 18593;18699;18815 162.31 93.21 1 809290000 26347 1793;13923 17772 18115 31179;31180;31181 31179 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.86572265625 3 362.865847 1085.57571 -0.106 -3.8465E-05 -0.025383 -9.2108E-06 -0.13139 -4.7676E-05 362.86580641784747 35.292 0.33216 35.319 35.164 35.496 0.027401 43 15 4 0 0 0 0.0074135 2 18619 18619;18728 91.085 48.772 1 88915000 26348 1793;13923 17772 18115 31182;31183 31182 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7957153320312 2 543.795132 1085.57571 0.17335 9.4265E-05 -1.1693 -0.00063586 -0.99596 -0.0005416 543.7941689182308 40.007 1.373 35.478 35.155 36.528 -4.5294 377 97 6 0 0 0 0.0060143 8 24320 23656;23788;23928;24059;24189;24320;24449;24592 114.5 64.49 1 7994799999.999999 26349 1793;13923 17772 18115 31184;31185;31186;31187;31188;31189;31190;31191 31189 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8668212890625 3 362.865847 1085.57571 0.94409 0.00034258 0.082404 2.9902E-05 1.0265 0.00037248 362.8658239351513 40 1.3231 35.471 35.171 36.494 -4.5294 305 94 6 0 0 0 0.008513 6 24200 23666;23690;23799;23939;24070;24200 81.915 52.478 1 1434300000 26350 1793;13923 17772 18115 31192;31193;31194;31195;31196;31197 31197 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8663024902344 3 362.865847 1085.57571 1.1632 0.0004221 0.74822 0.0002715 1.9115 0.0006936 362.8662718679921 41.195 0.3521 36.587 36.449 36.801 -4.6079 31 21 2 0 0 0 0.010301 1 24690 24690 64.927 43.337 1 9402900 26351 1793;13923 17772 18115 31198 31198 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MSMS AL20221201_MKP_PDAC_01 4 362.8664245605469 3 362.865847 1085.57571 NaN NaN NaN NaN NaN NaN NaN 40.685 1 36.156 35.656 36.656 -4.5294 0 0 0 0.038824 1 24330 24330 49.527 25.726 1 26352 1793;13923 17772 18115 31199 31199 0.03634609757477847 KFIDTTSKF 9 Unmodified _KFIDTTSKF_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENSG00000140986|ENST00000268661|RPL3L;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3;ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENSG00000100316|ENST00000216146|RPL3 MSMS AL20221201_MKP_PDAC_01 4 362.8656616210938 3 362.865847 1085.57571 NaN NaN NaN NaN NaN NaN NaN 40.957 1 36.349 35.849 36.849 -4.6079 0 0 0 0.047623 1 24530 24530 45.74 30.491 1 26353 1793;13923 17772 18115 31200 31200 0.03634609757477847 KFIHDMLWM 9 Unmodified _KFIHDMLWM_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5376586914062 3 407.536679 1219.58821 0.33214 0.00013536 1.9137 0.00077991 2.2459 0.00091527 407.53768377851065 59.695 0.22474 59.204 59.089 59.313 -0.49079 16 10 2 0 0 0 0.5029 1 32490 32490 4.5289 4.5289 1 1856300 + 26354 19400 17773 18116 31201 31201 -0.012803933755094477 KFIIPLKEWF 10 Unmodified _KFIIPLKEWF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2638854980469 3 440.92867 1319.76418 0.4326 0.00019074 0.92215 0.0004066 1.3547 0.00059735 440.92896515726653 99.768 0.11112 93.592 93.541 93.652 -6.1757 16 7 3 0 0 0 0.32533 1 66554 66554 25.997 11.159 1 53693000 26355 1587 17774 18117 31202 31202 0.11708887401732682 KFIKNIPWNF 10 Unmodified _KFIKNIPWNF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2490844726562 3 436.248403 1305.72338 1.1255 0.00049098 1.362 0.00059417 2.4875 0.0010852 436.2490249283244 94.987 0.57919 88.811 88.509 89.089 -6.1757 62 32 4 0 0 0 0.62068 1 62911 62911 8.9762 5.6566 1 16963000 26356 10212 17775 18118 31203 31203 0.08274546082134293 KFIKNIPWNF 10 Unmodified _KFIKNIPWNF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.3719482421875 2 653.868966 1305.72338 0.90709 0.00059312 0.96691 0.00063223 1.874 0.0012253 654.3704910731979 94.982 0.23515 88.807 88.677 88.912 -6.1757 24 12 3 0 0 0 0.0199 1 62926 62926 75.761 44.492 1 10145000 26357 10212 17775 18118 31204 31204 0.08274546082134293 KFIKSFLVF 9 Unmodified _KFIKSFLVF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8447265625 2 564.844428 1127.6743 1.4754 0.00083335 -0.45405 -0.00025647 1.0213 0.00057688 564.8440447720216 70.875 0.30096 70.911 70.763 71.064 0.035515 36 13 3 0 0 0 0.0085857 1 38995 38995 99.755 52.007 1 11268000 26358 3762;16168 17776 18119 31205 31205 0.11557257793197095 KFIKSFLVF 9 Unmodified _KFIKSFLVF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8990173339844 3 376.898711 1127.6743 1.1334 0.00042718 -0.17954 -6.7667E-05 0.95386 0.00035951 376.8985933387792 70.892 0.27951 70.928 70.763 71.043 0.035515 27 12 4 0 0 0 0.171 1 39027 39027 26.021 13.846 1 5477000 26359 3762;16168 17776 18119 31206 31206 0.11557257793197095 KFIKSFLVF 9 Unmodified _KFIKSFLVF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.844970703125 2 564.844428 1127.6743 0.79608 0.00044966 0.034651 1.9573E-05 0.83073 0.00046924 564.8444496765262 99.123 0.14964 92.948 92.859 93.009 -6.1757 15 8 2 0 0 0 0.011211 1 65900 65900 83.429 39.656 1 119630000 26360 3762;16168 17776 18119 31207 31207 0.11557257793197095 KFIKSFLVF 9 Unmodified _KFIKSFLVF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8992309570312 3 376.898711 1127.6743 1.1196 0.00042197 0.21399 8.0653E-05 1.3336 0.00050262 376.89865465106266 99.107 0.11269 92.931 92.878 92.99 -6.1757 10 6 2 0 0 0 0.31356 1 65932 65932 16.566 0 1 43341000 26361 3762;16168 17776 18119 31208 31208 0.11557257793197095 KFINVKAHHF 10 Unmodified _KFINVKAHHF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2376098632812 3 414.236497 1239.68766 0.027457 1.1374E-05 -0.81324 -0.00033687 -0.78579 -0.0003255 414.2361455476079 23.389 0.20399 23.411 23.322 23.526 0.021185 29 9 4 0 0 0 0.039874 1 12043 12043 63.227 40.453 1 27388000 26362 8367 17777 18120 31209 31209 0.07740508625101938 KFINVKAHHF 10 Unmodified _KFINVKAHHF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2367553710938 3 414.236497 1239.68766 0.72543 0.0003005 0.1848 7.6552E-05 0.91023 0.00037705 414.23658213736763 27.128 0.26641 24.091 23.932 24.199 -3.0365 31 13 3 0 0 0 0.017375 1 14968 14968 78.06 57.48 1 24089000 26363 8367 17777 18120 31210 31210 0.07740508625101938 KFINVKAHHF 10 Unmodified _KFINVKAHHF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2367248535156 3 414.236497 1239.68766 0.61711 0.00025563 -0.013893 -5.7551E-06 0.60322 0.00024988 414.2364747503421 77.227 0.60117 71.052 70.827 71.428 -6.1757 71 34 3 0 0 0 0.30444 1 50510 50510 27.223 21.926 1 24789000 26364 8367 17777 18120 31211 31211 0.07740508625101938 KFISDPKS 8 Unmodified _KFISDPKS_ 0 0 0 ENST00000441339.2_11:69061897-69062793:+|nuORF ENST00000441339.2_11:69061897-69062793:+|nuORF ENST00000441339.2_11:69061897-69062793:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2560729980469 2 461.255643 920.496732 0.2754 0.00012703 1.2266 0.00056579 1.502 0.00069282 461.25618409174183 40.008 0.41378 35.478 35.291 35.705 -4.5294 57 36 2 0 0 0 0.16757 1 23773 23773 82.529 21.172 1 26825000 26365 13394 17778 18121 31212 31212 0.03330382523188291 KFISQALLTF 10 Unmodified _KFISQALLTF_ 0 0 0 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3430786132812 2 584.342249 1166.66995 0.69764 0.00040766 1.2742 0.00074456 1.9718 0.0011522 584.343459022598 78.397 0.39902 78.449 78.177 78.576 0.052452 27 16 3 0 0 0 0.23548 1 43317 43317 31.268 13.122 1 3210700 26366 8871 17779 18122 31213 31213 0.09327748579585204 KFISQALLTF 10 Unmodified _KFISQALLTF_ 0 0 0 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3426513671875 2 584.342249 1166.66995 0.74572 0.00043576 0.29551 0.00017268 1.0412 0.00060844 584.8438629903887 98.572 0.10254 92.396 92.338 92.441 -6.1757 11 7 2 0 0 0 0.14688 1 65406 65406 40.239 12.61 1 31737000 26367 8871 17779 18122 31214 31214 0.09327748579585204 KFITRQLLF 9 Unmodified _KFITRQLLF_ 0 0 0 ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2408752441406 3 389.241248 1164.70191 0.66013 0.00025695 -0.30702 -0.00011951 0.35311 0.00013744 389.2410853403435 57.27 0.28034 57.204 57.098 57.378 -0.066036 25 13 2 0 0 0 0.19361 1 31158 31158 23.79 14.246 1 3866000 26368 11963 17780 18123 31215 31215 0.12615161053417978 KFITRQLLF 9 Unmodified _KFITRQLLF_ 0 0 0 ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2411193847656 3 389.241248 1164.70191 0.57995 0.00022574 1.1972 0.000466 1.7771 0.00069174 389.2416879647719 93.428 0.20287 87.253 87.1 87.303 -6.1757 33 15 3 0 0 0 0.076472 1 61809 61809 38.615 21.172 1 38147000 26369 11963 17780 18123 31216 31216 0.12615161053417978 KFITRQLLF 9 Unmodified _KFITRQLLF_ 0 0 0 ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF ENST00000341170.4_1_9:100388110-100389693:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3577880859375 2 583.358234 1164.70191 0.22185 0.00012942 -0.41217 -0.00024044 -0.19032 -0.00011103 583.3580953351967 93.418 0.1544 87.243 87.148 87.303 -6.1757 25 10 3 0 0 0 0.0088735 1 61815 61815 114.2 69.795 1 38275000 26370 11963 17780 18123 31217 31217 0.12615161053417978 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5575866699219 3 407.557348 1219.65021 -0.22611 -9.2152E-05 0.22189 9.0434E-05 -0.004215 -1.7178E-06 407.55739296587404 38.003 0.42096 38.02 37.793 38.214 0.01704 67 19 5 0 0 0 0.044011 2 20230 20127;20230 59.368 32.145 1 72574000 26371 9289 17781 18124 31218;31219 31219 0.04917417359479259 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5577697753906 3 407.557348 1219.65021 1.1417 0.0004653 -0.9154 -0.00037308 0.22627 9.2217E-05 407.5569163203794 41.948 0.59633 37.264 37.067 37.663 -4.6846 103 37 4 0 0 0 0.009483 2 25194 25194;25331 83.429 45.657 1 51761000 26372 9289 17781 18124 31220;31221 31220 0.04917417359479259 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5568542480469 3 407.557348 1219.65021 0.92206 0.00037579 -0.029011 -1.1824E-05 0.89304 0.00036397 407.55731929175386 80.355 0.94252 74.179 73.642 74.585 -6.1757 160 54 4 0 0 0 0.0090524 6 52464 52464;52505;52592;52722;52844;52969 78.06 44.347 1 133710000 26373 9289 17781 18124 31222;31223;31224;31225;31226;31227 31222 0.04917417359479259 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8335571289062 2 610.832383 1219.65021 0.72815 0.00044478 1.7731 0.001083 2.5012 0.0015278 610.8334422728816 80.353 0.27947 74.177 74.037 74.316 -6.1757 25 15 2 0 0 0 0.0038489 1 52672 52672 122.18 39.65 1 19169000 26374 9289 17781 18124 31228 31228 0.04917417359479259 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MSMS AL20221201_MKP_PDAC_01 4 610.8323364257812 2 610.832383 1219.65021 NaN NaN NaN NaN NaN NaN NaN 42.007 1 37.323 36.823 37.823 -4.6846 0 0 0 0.06887 1 25315 25315 51.415 26.534 1 26375 9289 17781 18124 31229 31229 0.04917417359479259 KFIWTNHKF 9 Unmodified _KFIWTNHKF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MSMS AL20221201_MKP_PDAC_01 4 610.833251953125 2 610.832383 1219.65021 NaN NaN NaN NaN NaN NaN NaN 80.482 1 74.306 73.806 74.806 -6.1757 0 0 0 0.016726 1 52804 52804 110.55 55.05 1 26376 9289 17781 18124 31230 31230 0.04917417359479259 KFKEVGEAF 9 Unmodified _KFKEVGEAF_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.784912109375 2 527.782025 1053.5495 -0.57792 -0.00030502 2.7957 0.0014755 2.2178 0.0011705 527.7839219100587 32.149 0.14008 32.149 32.063 32.204 0 12 6 2 0 0 0 0.11784 1 16787 16787 31.268 8.5321 1 1992900 26377 7736 17782 18125 31231 31231 0.024863405860060084 KFKGRDIYTF 10 Unmodified _KFKGRDIYTF_ 0 0 0 nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47 nc|ENSG00000196776|Q08722-2|CD47 nc|ENSG00000196776|Q08722-2|CD47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5678100585938 3 425.567912 1273.68191 0.11333 4.8229E-05 -0.0074474 -3.1694E-06 0.10588 4.5059E-05 425.56787257270975 33.638 0.25393 33.667 33.562 33.816 0.028931 34 10 4 0 0 0 0.5012 1 17716 17716 16.275 5.3756 1 14300000 26378 9868 17783 18126 31232 31232 0.05601365322786478 KFKLLDIRL 9 Unmodified _KFKLLDIRL_ 0 0 0 REV__ENST00000264428.8_1_4:157997386-157999177:+|nuORF REV__ENST00000264428.8_1_4:157997386-157999177:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2219543457031 3 382.585015 1144.73321 0.6736 0.00025771 0.087996 3.3666E-05 0.7616 0.00029138 382.5849740901386 63.483 0.68813 63.461 63.297 63.985 -0.021614 51 33 2 0 0 0 0.21572 1 34800 34800 4.5289 1.7937 1 3227800 + 26379 25071 17784 18127 31233 31233 0.16663734087524062 KFKPVVQR 8 Unmodified _KFKPVVQR_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.314453125 2 501.316369 1000.61818 NaN NaN NaN NaN NaN NaN NaN 14.94 1 14.909 14.409 15.409 -0.030868 0 0 0 0.97444 1 7303 7303 2.0598 1.3694 1 26380 2398 17785 18128 31234 31234 0.11790049676369563 KFKPVVQR 8 Unmodified _KFKPVVQR_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.3148498535156 2 501.316369 1000.61818 NaN NaN NaN NaN NaN NaN NaN 16.011 1 15.997 15.497 16.497 -0.014067 0 0 0 0.97444 1 7884 7884 0.6015 0 1 26381 2398 17785 18128 31235 31235 0.11790049676369563 KFKPVVQR 8 Unmodified _KFKPVVQR_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3149719238281 2 501.316369 1000.61818 NaN NaN NaN NaN NaN NaN NaN 16.979 1 16.984 16.484 17.484 0.0050564 0 0 0 0.97444 1 8541 8541 2.0598 1.3694 1 26382 2398 17785 18128 31236 31236 0.11790049676369563 KFLDAGHKLNF 11 Unmodified _KFLDAGHKLNF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.5718994140625 3 430.571545 1288.69281 NaN NaN NaN NaN NaN NaN NaN 42.584 1 42.575 42.075 43.075 -0.0088196 0 0 0 2.621E-07 1 22804 22804 98.634 74.833 1 26383 7562 17786 18129 31237 31237 0.060007676971054025 KFLDAGHKLNF 11 Unmodified _KFLDAGHKLNF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5693664550781 3 430.571545 1288.69281 0.76014 0.0003273 -1.9043 -0.00081994 -1.1442 -0.00049265 430.570550098184 48.09 0.42303 42.857 42.565 42.988 -5.2339 52 25 3 0 0 0 0.044017 1 29849 29849 52.193 25.925 1 30606000 26384 7562 17786 18129 31238 31238 0.060007676971054025 KFLDAGHKLNF 11 Unmodified _KFLDAGHKLNF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5720520019531 3 430.571545 1288.69281 1.1111 0.00047839 -0.16866 -7.2619E-05 0.94241 0.00040578 430.57141677855213 81.636 1.2505 75.46 74.77 76.02 -6.1757 185 71 3 0 0 0 0.00051196 6 53545 53166;53292;53419;53545;53679;53834 88.576 64.611 1 42071000 26385 7562 17786 18129 31239;31240;31241;31242;31243;31244 31242 0.060007676971054025 KFLDAGHKLNF 11 Unmodified _KFLDAGHKLNF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 430.571545 1288.69281 0.13071 5.6279E-05 0.1228 5.2876E-05 0.25351 0.00010915 430.57178970080406 42.987 0.19128 42.677 42.568 42.759 -0.31039 -0.089908 0.0011699 NaN 52.193 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3556400 26386 7562 17786 18129 0.060007676971054025 KFLDEISSTET 11 Unmodified _KFLDEISSTET_ 0 0 0 ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 ENSG00000155903|ENST00000286364|RASA2 ENSG00000155903|ENST00000286364|RASA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8786315917969 3 423.878481 1268.61361 0.71369 0.00030252 -1.8507 -0.00078446 -1.137 -0.00048194 423.8779557260952 47.436 0.26013 47.397 47.258 47.518 -0.038647 28 11 4 0 0 0 0.65846 1 25558 25558 4.1166 1.4854 1 3206900 26387 6417 17787 18130 31245 31245 -0.009949688383585453 KFLDFPIGN 9 Unmodified _KFLDFPIGN_ 0 0 0 nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8590698242188 3 350.858804 1049.55458 0.98672 0.0003462 0.96572 0.00033883 1.9524 0.00068503 350.85895937044927 39.998 1.2501 35.469 35.216 36.466 -4.5294 217 89 4 0 0 0 0.34999 3 23833 23833;23971;24236 10.151 2.5416 1 580480000 26388 264 17788 18131 31246;31247;31248 31246 0.03178644448621526 KFLDKYMPQF 10 Unmodified _KFLDKYMPQF_ 0 0 0 ENST00000539788.5_1_11:114314891-114320694:+|nuORF;ENST00000538791.3_1_11:114315223-114320694:+|nuORF;ENST00000543131.5_1_11:114310234-114320694:+|nuORF;ENST00000538403.5_1_11:114314877-114320694:+|nuORF;nc|ENSG00000076043|Q9Y3B8-2|REXO2;nc|ENSG00000076043|Q9Y3B8-3|REXO2;ENSG00000076043|ENST00000265881|REXO2 ENST00000539788.5_1_11:114314891-114320694:+|nuORF ENST00000539788.5_1_11:114314891-114320694:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.8411865234375 2 658.839017 1315.66348 0.79506 0.00052381 2.4184 0.0015934 3.2135 0.0021172 658.8410433432655 91.621 0.26923 85.446 85.312 85.581 -6.1757 16 14 2 0 0 0 0.040614 1 60588 60588 62.869 26.362 1 7286800 26389 1178 17789 18132 31249 31249 0.018274873565815142 KFLDPITGTF 10 Unmodified _KFLDPITGTF_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8136596679688 2 569.810782 1137.60701 0.76058 0.00043338 -1.1243 -0.00064066 -0.36376 -0.00020727 569.8102970069441 72.307 0.26844 71.831 71.752 72.02 -0.47609 28 12 3 0 0 0 0.05292 1 39569 39569 74.2 42.931 1 3727600 26390 5063 17790 18133 31250 31250 0.04371182791555839 KFLDPITGTF 10 Unmodified _KFLDPITGTF_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8109741210938 2 569.810782 1137.60701 0.62668 0.00035709 -0.21618 -0.00012318 0.41051 0.00023391 569.8109733670626 71.795 0.4473 71.834 71.664 72.111 0.039024 74 21 5 0 0 0 0.040797 1 39486 39486 80.676 50.039 1 12824000 26391 5063 17790 18133 31251 31251 0.04371182791555839 KFLDPITGTF 10 Unmodified _KFLDPITGTF_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8115234375 2 569.810782 1137.60701 0.86156 0.00049092 -0.55257 -0.00031486 0.30898 0.00017606 569.8104738008115 92.648 0.64799 86.472 86.035 86.683 -6.1757 71 39 2 0 0 0 0.0027451 3 61238 61113;61238;61372 133.05 87.031 1 22446000 26392 5063 17790 18133 31252;31253;31254 31253 0.04371182791555839 KFLDTALSF 9 Unmodified _KFLDTALSF_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2855224609375 2 521.2844 1040.55425 0.47841 0.00024939 2.1483 0.0011199 2.6268 0.0013693 521.2855973396664 72.054 0.29419 71.578 71.415 71.709 -0.47609 26 11 3 0 0 0 0.023481 1 39414 39414 60.074 16.216 1 4325000 26393 5400 17791 18134 31255 31255 0.035592247287468126 KFLDTALSF 9 Unmodified _KFLDTALSF_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2850952148438 2 521.2844 1040.55425 0.77145 0.00040215 0.96026 0.00050057 1.7317 0.00090272 521.284999352228 71.518 0.29884 71.557 71.365 71.664 0.039024 41 13 4 0 0 0 0.036857 1 39312 39312 51.63 15.503 1 7949600 26394 5400 17791 18134 31256 31256 0.035592247287468126 KFLDTALSF 9 Unmodified _KFLDTALSF_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2854614257812 2 521.2844 1040.55425 1.3332 0.00069497 0.31639 0.00016493 1.6496 0.0008599 521.2847984921625 94.243 0.7215 88.068 87.823 88.545 -6.1757 85 41 3 0 0 0 0.023481 3 62470 62355;62470;62659 60.074 12.325 1 17812000 26395 5400 17791 18134 31257;31258;31259 31258 0.035592247287468126 KFLEEAGFK 9 Unmodified _KFLEEAGFK_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8621520996094 3 356.862325 1067.56515 -0.12865 -4.5912E-05 -0.0066711 -2.3807E-06 -0.13533 -4.8293E-05 356.86229906084066 35.292 0.35307 35.32 35.143 35.496 0.027363 52 16 4 0 0 0 0.43463 1 18603 18603 7.1017 0 1 131670000 + 26396 21196 17792 18135 31260 31260 0.034066271030496864 KFLEEAGFK 9 Unmodified _KFLEEAGFK_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8623657226562 3 356.862325 1067.56515 0.9651 0.00034441 -0.086561 -3.089E-05 0.87854 0.00031352 356.86219202378953 39.965 1.3873 35.435 35.14 36.528 -4.5294 289 98 5 0 0 0 0.43463 1 23811 23811 7.1017 2.5729 1 2389400000 + 26397 21196 17792 18135 31261 31261 0.034066271030496864 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3223266601562 2 571.321848 1140.62914 0.62628 0.00035781 0.098782 5.6436E-05 0.72506 0.00041424 571.3219249607201 39.021 0.25501 39.021 38.88 39.135 0 34 11 4 0 0 0 0.00044362 1 20841 20841 145.13 72.162 1 10588000 26398 3121 17793 18136 31262 31262 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2170715332031 3 381.216991 1140.62914 0.31867 0.00012148 0.39961 0.00015234 0.71827 0.00027382 381.21720753701993 39.014 0.36512 39.014 38.811 39.177 0 47 16 4 0 0 0 0.0086722 1 20860 20860 71.708 43.213 1 15550000 26399 3121 17793 18136 31263 31263 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.216796875 3 381.216991 1140.62914 -0.02164 -8.2495E-06 -0.19443 -7.4119E-05 -0.21607 -8.2369E-05 381.2169049862438 39.276 0.37288 38.989 38.812 39.185 -0.28687 52 17 4 0 0 0 0.0087873 2 20672 20672;20770 84.522 38.782 1 130360000 26400 3121 17793 18136 31264;31265 31264 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.32177734375 2 571.321848 1140.62914 0.13415 7.6643E-05 -0.30365 -0.00017348 -0.1695 -9.684E-05 571.3216108309327 39.271 0.28279 38.984 38.861 39.143 -0.28687 47 13 4 0 0 0 3.6966E-15 2 20681 20681;20783 187.3 94.643 1 119160000 26401 3121 17793 18136 31266;31267 31266 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3226318359375 2 571.321848 1140.62914 0.18535 0.0001059 -0.062901 -3.5937E-05 0.12245 6.9959E-05 571.3217270186392 38.9 0.26397 38.912 38.757 39.021 0.011452 28 12 3 0 0 0 1.9878E-10 1 20672 20672 173.69 81.033 1 10777000 26402 3121 17793 18136 31268 31268 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2172546386719 3 381.216991 1140.62914 0.19518 7.4406E-05 2.4189 0.00092214 2.6141 0.00099655 381.2187402288114 38.88 0.7911 38.891 38.698 39.489 0.011452 62 37 4 0 0 0 0.0094097 1 20673 20673 75.571 33.615 1 18223000 26403 3121 17793 18136 31269 31269 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3228149414062 2 571.321848 1140.62914 0.62512 0.00035714 0.20512 0.00011719 0.83023 0.00047433 571.3219627636296 44.155 0.53082 39.303 39.066 39.597 -4.852 115 37 4 0 0 0 3.6966E-15 3 27081 26808;26946;27081 187.3 107.7 1 190970000 26404 3121 17793 18136 31270;31271;31272 31272 0.06445407260002867 KFLEQVHQL 9 Unmodified _KFLEQVHQL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.2175903320312 3 381.216991 1140.62914 0.97432 0.00037143 0.34328 0.00013087 1.3176 0.00050229 381.2171007798661 44.141 0.61021 39.289 39.052 39.662 -4.852 136 42 4 0 0 0 0.0082475 2 26957 26821;26957 84.522 49.59 1 231950000 26405 3121 17793 18136 31273;31274 31274 0.06445407260002867 KFLESTDSF 9 Unmodified _KFLESTDSF_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000469334.5_1_17:38785039-38787969:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2611694335938 2 537.261122 1072.50769 0.5009 0.00026911 -0.028183 -1.5141E-05 0.47272 0.00025397 537.2607982062883 45.812 0.28936 45.812 45.685 45.974 0 38 14 3 0 0 0 0.011671 1 24990 24990 75.761 31.903 1 37255000 26406 94 17794 18137 31275 31275 -0.02566259893183087 KFLESTDSF 9 Unmodified _KFLESTDSF_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000469334.5_1_17:38785039-38787969:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2605590820312 2 537.261122 1072.50769 0.69039 0.00037092 -0.39746 -0.00021354 0.29293 0.00015738 537.2607859814269 52.409 0.32951 46.674 46.563 46.892 -5.7345 25 17 2 0 0 0 0.017075 1 33061 33061 66.457 26.499 1 31105000 26407 94 17794 18137 31276 31276 -0.02566259893183087 KFLESTDSF 9 Unmodified _KFLESTDSF_ 0 0 0 nc|ENSG00000073584|Q969G3-6|SMARCE1;nc|ENSG00000073584|Q969G3-5|SMARCE1;chr17:40628975-40630714|179|26.55|0.3|6.47|-|ENST00000644527|SMARCE1,SMARCE1;nc|ENSG00000073584|Q969G3-3|SMARCE1;nc|ENSG00000073584|Q969G3-2|SMARCE1;nc|ENSG00000073584|Q969G3-4|SMARCE1;ENSG00000073584|ENST00000348513|SMARCE1;ENST00000469334.5_1_17:38785039-38787969:-|nuORF nc|ENSG00000073584|Q969G3-6|SMARCE1 nc|ENSG00000073584|Q969G3-6|SMARCE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.261122 1072.50769 0.22839 0.00012271 -0.72301 -0.00038844 -0.49462 -0.00026574 537.2605949501782 46.135 0.15835 45.799 45.723 45.881 -0.33664 -0.006682 -0.00052423 NaN 75.761 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4004500 26408 94 17794 18137 -0.02566259893183087 KFLGPAEHLTF 11 Unmodified _KFLGPAEHLTF_ 0 0 0 ENST00000463580.5_1_2:95940333-95943708:+|nuORF;ENST00000487138.5_1_2:95940333-95943144:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2 ENST00000463580.5_1_2:95940333-95943708:+|nuORF ENST00000463580.5_1_2:95940333-95943708:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5647888183594 3 420.564279 1258.67101 0.29692 0.00012487 0.3464 0.00014568 0.64332 0.00027056 420.56443182185797 54.808 0.28135 54.741 54.579 54.861 -0.066936 24 13 2 0 0 0 0.65706 1 29763 29763 8.2864 5.6552 1 2957000 26409 6365 17795 18138 31277 31277 0.05201962948490291 KFLKKLNHREL 11 Unmodified _KFLKKLNHREL_ 0 0 0 ENST00000377325.1_1_6:28056349-28056487:+|nuORF ENST00000377325.1_1_6:28056349-28056487:+|nuORF ENST00000377325.1_1_6:28056349-28056487:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.9603881835938 3 475.961144 1424.8616 0.89779 0.00042731 -0.24843 -0.00011824 0.64936 0.00030907 475.9611153916341 92.459 0.37963 86.284 86.035 86.415 -6.1757 52 22 3 0 0 0 0.72981 1 61040 61040 1.4551 0 1 29176000 26410 12517 17796 18139 31278 31278 0.1661666933057404 KFLLQRPV 8 Unmodified _KFLLQRPV_ 0 0 0 ENSG00000165182|ENST00000379211|CXorf58 ENSG00000165182|ENST00000379211|CXorf58 ENSG00000165182|ENST00000379211|CXorf58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8188781738281 2 500.818744 999.622936 0.3949 0.00019777 0.26432 0.00013238 0.65923 0.00033015 500.8187373597456 93.423 0.12474 87.248 87.178 87.303 -6.1757 13 8 2 0 0 0 0.3408 1 61825 61825 50.855 3.9342 1 17722000 26411 7305 17797 18140 31279 31279 0.12310933819128422 KFLNIRCPNL 10 Unmodified _KFLNIRCPNL_ 0 0 0 REV__ENST00000372685.7_1_X:102508893-102509546:-|nuORF REV__ENST00000372685.7_1_X:102508893-102509546:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.231689453125 3 406.565626 1216.67505 0.83115 0.00033792 0.85937 0.00034939 1.6905 0.00068731 406.56577196767284 101.7 0.083313 95.529 95.461 95.545 -6.1757 5 3 2 0 0 0 0.23996 1 68275 68275 1.5923 0 1 7424400 + 26412 26119 17798 18141 31280 31280 0.0753772917059905 KFLNKARK 8 Unmodified _KFLNKARK_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-3|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8236694335938 2 502.821818 1003.62908 -0.58035 -0.00029181 2.7024 0.0013588 2.1221 0.001067 502.82367061472615 104 0.079453 103.96 103.91 103.99 -0.048737 5 3 2 0 0 0 0.80992 1 57769 57769 0.69038 0 1 997780 26413 7705 17799 18142 31281 31281 0.12741452050659063 KFLSQLEITF 10 Unmodified _KFLSQLEITF_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3452758789062 2 613.344989 1224.67542 1.3701 0.00084037 0.32557 0.00019969 1.6957 0.0010401 613.3450607159555 81.183 0.38389 81.243 81.041 81.425 0.059929 42 14 4 0 0 0 0.0090596 2 44850 44850;44963 89.401 43.701 1 7688900 26414 7151 17800 18143 31282;31283 31282 0.0720742737139517 KFLSQLEITF 10 Unmodified _KFLSQLEITF_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3446655273438 2 613.344989 1224.67542 0.095363 5.849E-05 0.18534 0.00011368 0.2807 0.00017217 613.3451092466128 98.803 0.22318 92.627 92.465 92.689 -6.1757 29 16 3 0 0 0 0.14688 1 65622 65622 40.239 25.834 1 122250000 26415 7151 17800 18143 31284 31284 0.0720742737139517 KFLVFLLHF 9 Unmodified _KFLVFLLHF_ 0 0 0 REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF REV__ENST00000376494.1_1_13:99373362-99378793:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.9059448242188 3 388.570706 1162.69029 NaN NaN NaN NaN NaN NaN NaN 97.352 1 97.109 96.609 97.609 -0.24277 0 0 0 0.85798 1 53160 53160 0.23584 0 1 + 26416 26224 17801 18144 31285 31285 0.11544964030076699 KFLVQNNVF 9 Unmodified _KFLVQNNVF_ 0 0 0 ENST00000314367.14_1_9:175738-177793:-|nuORF ENST00000314367.14_1_9:175738-177793:-|nuORF ENST00000314367.14_1_9:175738-177793:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8115844726562 2 554.811116 1107.60768 0.97317 0.00053992 -0.3302 -0.0001832 0.64297 0.00035673 554.8111486645216 57.895 0.25505 57.829 57.655 57.91 -0.066032 28 12 3 0 0 0 0.040683 1 31521 31521 46.021 31.183 1 4538500 26417 11723 17802 18145 31286 31286 0.05818022231255782 KFLVQNNVF 9 Unmodified _KFLVQNNVF_ 0 0 0 ENST00000314367.14_1_9:175738-177793:-|nuORF ENST00000314367.14_1_9:175738-177793:-|nuORF ENST00000314367.14_1_9:175738-177793:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 554.811116 1107.60768 1.4922 0.00082787 0.80021 0.00044397 2.2924 0.0012718 555.3128342474131 64.055 0.096745 57.88 57.802 57.899 -6.1757 0.025132 0.0010226 NaN 46.021 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 5091300 26418 11723 17802 18145 0.05818022231255782 KFLVYVANF 9 Unmodified _KFLVYVANF_ 0 0 0 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2 ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8109130859375 2 550.810585 1099.60662 0.29846 0.00016439 1.2307 0.00067788 1.5292 0.00084228 550.8111403649264 74.423 0.3815 74.469 74.235 74.616 0.045959 35 16 3 0 0 0 0.32871 1 41082 41082 15.847 9.124 1 8126900 26419 793 17803 18146 31287 31287 0.06079807862374764 KFLVYVANF 9 Unmodified _KFLVYVANF_ 0 0 0 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2 ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8118286132812 2 550.810585 1099.60662 1.1902 0.00065557 0.98866 0.00054456 2.1788 0.0012001 550.8111597113481 96.339 0.22778 90.163 90.025 90.253 -6.1757 32 13 3 0 0 0 0.1773 1 63821 63821 25.399 8.3128 1 20723000 26420 793 17803 18146 31288 31288 0.06079807862374764 KFMAAQPEGLE 11 Unmodified _KFMAAQPEGLE_ 0 0 0 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 REV__nc|ENSG00000197442|Q99683-2|MAP3K5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5375061035156 3 407.537513 1219.59071 0.090703 3.6965E-05 0.42703 0.00017403 0.51773 0.000211 407.53774089146043 59.312 0.28516 59.259 59.134 59.42 -0.053059 27 14 2 0 0 0 0.65096 1 32296 32296 8.7518 8.7518 1 12760000 + 26421 23171 17804 18147 31289 31289 -0.010302664368282421 KFMGVQMETF 10 2 Oxidation (M) _KFM(Oxidation (M))GVQM(Oxidation (M))ETF_ KFM(1)GVQM(1)ETF KFM(52)GVQM(52)ETF 0 0 2 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2813720703125 2 625.283217 1248.55188 -0.13138 -8.215E-05 -1.2686 -0.00079323 -1.4 -0.00087538 625.2823004906639 39.19 0.39651 38.903 38.585 38.981 -0.28687 37 17 3 0 0 0 0.077785 2 20670 20538;20670 51.63 36.316 1 6711700 26422 5256 17805 18148 31290;31291 31291 967;968 -0.06245315062847112 KFMHTPHQF 9 Unmodified _KFMHTPHQF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5274047851562 3 391.527171 1171.55968 0.82574 0.0003233 -0.050002 -1.9577E-05 0.77574 0.00030372 391.5271394898357 26.653 0.3794 23.702 23.542 23.921 -2.9511 57 19 4 0 0 0 0.1773 2 14677 14677;14797 43.772 32.278 1 46352000 26423 6153 17806 18149 31292;31293 31292 -0.019233749604381956 KFMKRQEEYY 10 Unmodified _KFMKRQEEYY_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.5674438476562 3 474.567583 1420.68092 NaN NaN NaN NaN NaN NaN NaN 27.452 1 27.406 26.906 27.906 -0.046408 0 0 0 0.99897 1 14148 14148 0.77653 0.078866 1 26424 1322 17807 18150 31294 31294 -0.012592171083952053 KFMPVEGMVF 10 2 Oxidation (M) _KFM(Oxidation (M))PVEGM(Oxidation (M))VF_ KFM(1)PVEGM(1)VF KFM(44)PVEGM(44)VF 0 0 2 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7903442382812 2 608.790678 1215.5668 0.50429 0.00030701 -0.67662 -0.00041192 -0.17232 -0.00010491 608.7904072730068 53.627 0.21434 53.175 53.065 53.28 -0.45173 29 10 4 0 0 0 0.11824 1 29005 29005 43.772 19.752 1 5814000 26425 4684 17808 18151 31295 31295 848;849 -0.03235823194859222 KFMPVEGMVF 10 Unmodified _KFMPVEGMVF_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.792724609375 2 592.795763 1183.57697 0.96157 0.00057001 -1.659 -0.00098342 -0.69739 -0.00041341 592.7937464480391 96.11 0.36316 89.934 89.644 90.007 -6.1757 56 21 3 0 0 0 0.25982 1 63651 63651 29.841 12.728 1 59245000 26426 4684 17808 18152 31296 31296 -0.0074721546964156005 KFMPVSSLI 9 Unmodified _KFMPVSSLI_ 0 0 0 ENSG00000108592|ENST00000427159|FTSJ3;ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENSG00000108592|ENST00000427159|FTSJ3;ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENSG00000108592|ENST00000427159|FTSJ3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2879333496094 2 511.291171 1020.56779 0.75842 0.00038777 -0.94323 -0.00048226 -0.1848 -9.4488E-05 511.2909528814663 92.388 0.52502 86.212 85.89 86.415 -6.1757 76 31 3 0 0 0 0.020973 3 60918 60918;61053;61181 62.573 18.166 1 44561000 26427 2588;15528 17809 18153 31297;31298;31299 31297 0.05832759236352558 KFMYFFPF 8 Unmodified _KFMYFFPF_ 0 0 0 REV__ENST00000299964.3_1_11:114166574-114166922:+|nuORF REV__ENST00000299964.3_1_11:114166574-114166922:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 376.1858825683594 3 376.185863 1125.53576 NaN NaN NaN NaN NaN NaN NaN 78.422 1 72.246 71.746 72.746 -6.1757 0 0 0 0.95201 1 51330 51330 7.2892 0 1 + 26428 25299 17810 18154 31300 31300 -0.021986084467926048 KFNDCKIYH 9 Unmodified _KFNDCKIYH_ 0 0 0 REV__ENST00000393085.3_1_7:135613384-135613519:-|nuORF REV__ENST00000393085.3_1_7:135613384-135613519:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8588256835938 3 389.858698 1166.55426 NaN NaN NaN NaN NaN NaN NaN 15.945 1 15.931 15.431 16.431 -0.014067 0 0 0 0.85798 1 7848 7848 0.23584 0 1 + 26429 26411 17811 18155 31301 31301 -0.022350985428829517 KFNLYWAK 8 Unmodified _KFNLYWAK_ 0 0 0 REV__ENST00000432329.6_1_2:208462445-208462559:+|nuORF REV__ENST00000432329.6_1_2:208462445-208462559:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1463623046875 3 357.19916 1068.57565 -0.53951 -0.00019271 -3.0206 -0.001079 -3.5601 -0.0012717 357.19785174209744 33.783 0.25965 33.783 33.648 33.908 0 28 12 3 0 0 0 0.80232 1 17677 17677 3.5965 0 1 3522400 + 26430 26988 17812 18156 31302 31302 0.0441065454810996 KFNPVSFTW 9 Unmodified _KFNPVSFTW_ 0 0 0 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2903442382812 2 563.290017 1124.56548 0.50202 0.00028278 0.89919 0.00050651 1.4012 0.00078929 563.2900456686754 72.751 0.30379 72.793 72.64 72.944 0.041725 33 14 3 0 0 0 0.020973 1 40069 40069 62.573 24.422 1 11110000 26431 3811 17813 18157 31303 31303 0.008180468229056714 KFNPVSFTW 9 Unmodified _KFNPVSFTW_ 0 0 0 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 ENSG00000124702|ENST00000326974|KLHDC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.28955078125 2 563.290017 1124.56548 0.80781 0.00045503 0.089846 5.0609E-05 0.89765 0.00050564 563.2904141866337 93.571 0.64942 87.396 87.193 87.842 -6.1757 95 39 5 0 0 0 0.028475 2 61881 61881;62017 56.177 33.441 1 64167000 26432 3811 17813 18157 31304;31305 31304 0.008180468229056714 KFNVHHRYFSF 11 Unmodified _KFNVHHRYFSF_ 0 0 0 REV__nc|ENSG00000099840|Q1ZYL8-3|IZUMO4 REV__nc|ENSG00000099840|Q1ZYL8-3|IZUMO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.5856628417969 3 494.586077 1480.7364 0.53753 0.00026586 -0.97015 -0.00047983 -0.43262 -0.00021397 494.58574471777075 48.46 0.21557 48.416 48.32 48.536 -0.04369 25 10 3 0 0 0 0.71503 1 26133 26133 2.8433 0 1 4207600 + 26433 17986 17814 18158 31306 31306 0.015263771942272797 KFPQFLPKF 9 Unmodified _KFPQFLPKF_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1;ENST00000463793.1_1_1:234546169-234556549:-|nuORF ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5589904785156 3 384.558577 1150.6539 1.5451 0.00059416 -1.2101 -0.00046534 0.33498 0.00012882 384.55836951572195 94.608 0.27621 88.433 88.282 88.558 -6.1757 27 15 3 0 0 0 0.12424 1 62633 62633 22.658 16.028 1 14533000 26434 816 17815 18159 31307 31307 0.08460087133380512 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1864929199219 3 390.185579 1167.53491 0.50761 0.00019806 0.39436 0.00015387 0.90197 0.00035194 390.1858116644292 47.83 0.29459 47.83 47.665 47.959 0 37 13 4 0 0 0 0.05447 1 26169 26169 40.239 32.762 1 9554500 26435 4951 17816 18160 31308 31308 -0.04215731562157998 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7747192382812 2 584.774731 1167.53491 0.57881 0.00033847 0.20818 0.00012174 0.78699 0.00046021 584.7749659220873 47.836 0.29459 47.836 47.665 47.959 0 46 13 4 0 0 0 0.01958 1 26177 26177 63.961 53.887 1 14010000 26436 4951 17816 18160 31309 31309 -0.04215731562157998 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1852111816406 3 390.185579 1167.53491 0.56593 0.00022082 -0.36834 -0.00014372 0.19759 7.7098E-05 390.18540001521944 48.032 0.29478 47.679 47.555 47.85 -0.3526 44 14 4 0 0 0 0.011968 2 25737 25737;25849 59.368 50.924 1 23030000 26437 4951 17816 18160 31310;31311 31310 -0.04215731562157998 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7744140625 2 584.774731 1167.53491 0.44528 0.00026039 -0.43191 -0.00025257 0.01337 7.8186E-06 584.7744900849297 48.07 0.31487 47.718 47.535 47.85 -0.3526 39 15 3 0 0 0 0.025842 1 25755 25755 57.722 40.78 1 29088000 26438 4951 17816 18160 31312 31312 -0.04215731562157998 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.1861877441406 3 390.185579 1167.53491 1.3373 0.00052181 0.13228 5.1614E-05 1.4696 0.00057342 390.1856468133905 52.755 0.356 47.021 46.836 47.192 -5.7345 43 19 3 0 0 0 0.022193 2 33343 33222;33343 55.503 50.1 1 53045000 26439 4951 17816 18160 31313;31314 31314 -0.04215731562157998 KFQDAHFEF 9 Unmodified _KFQDAHFEF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENST00000507815.1_1_4:169157339-169158551:-|nuORF ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 584.774731 1167.53491 0.83978 0.00049108 1.3552 0.0007925 2.195 0.0012836 584.7766227263073 47.784 0.22879 47.745 47.62 47.849 -0.038643 -0.021086 0.0016647 NaN 63.961 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1492700 26440 4951 17816 18160 -0.04215731562157998 KFQGNDVTLK 10 Unmodified _KFQGNDVTLK_ 0 0 0 ENST00000489376.1_1_19:58267044-58268416:+|nuORF ENST00000489376.1_1_19:58267044-58268416:+|nuORF ENST00000489376.1_1_19:58267044-58268416:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.315185546875 2 575.316763 1148.61897 NaN NaN NaN NaN NaN NaN NaN 94.338 1 93.917 93.417 94.417 -0.42044 0 0 0 0.97855 1 51543 51543 2.9952 0 1 26441 14238 17817 18161 31315 31315 0.05060799534749094 KFRLVIASTL 10 Unmodified _KFRLVIASTL_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;ENST00000490958.1_1_3:184082833-184083015:+|nuORF nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.364013671875 2 574.363516 1146.71248 1.6413 0.00094271 -0.91927 -0.00052799 0.72205 0.00041472 574.3628404848529 104.66 0.12087 98.488 98.417 98.538 -6.1757 17 6 4 0 0 0 0.71123 1 70065 70065 1.6526 0.85899 1 35282000 26442 16329 17818 18162 31316 31316 0.14499143707848816 KFSGSSKDLKF 11 Unmodified _KFSGSSKDLKF_ 0 0 0 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5623474121094 3 415.227556 1242.66084 0.072888 3.0265E-05 1.1589 0.00048119 1.2318 0.00051146 415.22807412875653 27.997 0.17622 28.026 27.929 28.106 0.029564 11 6 2 0 0 0 0.58349 1 14576 14576 13.535 2.7354 1 2717200 26443 4503 17819 18163 31317 31317 0.0492135522326862 KFSGSSKDLKF 11 Unmodified _KFSGSSKDLKF_ 0 0 0 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 MSMS AL20221201_MKP_PDAC_01 4 415.562255859375 3 415.227556 1242.66084 NaN NaN NaN NaN NaN NaN NaN 31.211 1 27.515 27.015 28.015 -3.6958 0 0 0 0.21299 1 17659 17659 27.536 15.308 1 26444 4503 17819 18163 31318 31318 0.0492135522326862 KFSNEVFRF 9 Unmodified _KFSNEVFRF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3063354492188 2 587.306198 1172.59784 0.94235 0.00055345 0.093015 5.4628E-05 1.0354 0.00060808 587.3061383454772 52.637 0.1828 52.578 52.446 52.629 -0.058918 23 8 3 0 0 0 0.016448 1 28480 28480 72.968 46.084 1 11101000 26445 10367;8680 17820 18164 31319 31319 0.01844834225903469 KFSNEVFRF 9 Unmodified _KFSNEVFRF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8734436035156 3 391.873224 1172.59784 0.65678 0.00025738 -0.70165 -0.00027496 -0.044867 -1.7582E-05 392.20707460805465 52.613 0.16155 52.554 52.446 52.608 -0.058918 18 7 3 0 0 0 0.044042 1 28501 28501 47.732 37.968 1 4087100 26446 10367;8680 17820 18164 31320 31320 0.01844834225903469 KFSNEVFRF 9 Unmodified _KFSNEVFRF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000205413|ENST00000379958|SAMD9;ENSG00000177409|ENST00000318238|SAMD9L ENSG00000205413|ENST00000379958|SAMD9 MSMS AL20221201_MKP_PDAC_01 4 391.8736572265625 3 391.873224 1172.59784 NaN NaN NaN NaN NaN NaN NaN 81.711 1 75.536 75.036 76.036 -6.1757 0 0 0 0.20097 1 53649 53649 30.703 19.072 1 26447 10367;8680 17820 18164 31321 31321 0.01844834225903469 KFSNIVDKF 9 Unmodified _KFSNIVDKF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3034057617188 2 549.303124 1096.5917 -0.14203 -7.8017E-05 0.29177 0.00016027 0.14974 8.2254E-05 549.3030879696113 45.012 0.13748 44.688 44.562 44.7 -0.32425 9 6 2 0 0 0 0.0032805 1 24025 24025 125.18 21.358 1 6877700 26448 1936 17821 18165 31322 31322 0.04726315994366814 KFSNIVDKF 9 Unmodified _KFSNIVDKF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.80517578125 2 549.303124 1096.5917 -0.10531 -5.7848E-05 0.20011 0.00010992 0.0948 5.2074E-05 549.3031847630328 44.7 0.18523 44.677 44.612 44.798 -0.022064 20 9 3 0 0 0 2.1581E-06 1 23993 23993 158.08 22.213 1 14281000 26449 1936 17821 18165 31323 31323 0.04726315994366814 KFSNRLIKN 9 Unmodified _KFSNRLIKN_ 0 0 0 REV__ENST00000300107.7_1_15:65442808-65442961:-|nuORF REV__ENST00000300107.7_1_15:65442808-65442961:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 373.8935546875 3 373.892619 1118.65603 NaN NaN NaN NaN NaN NaN NaN 76.309 1 70.134 69.634 70.634 -6.1757 0 0 0 0.56988 1 49916 49916 13.615 1.4401 1 + 26450 25302 17822 18166 31324 31324 0.10144515871184012 KFSPNTSQF 9 Unmodified _KFSPNTSQF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2607421875 2 528.261456 1054.50836 -0.35812 -0.00018918 0.65772 0.00034745 0.2996 0.00015827 528.2618428184292 34.678 0.2131 34.487 34.351 34.564 -0.19131 24 9 3 0 0 0 0.01958 1 18131 18131 63.961 21.866 1 11192000 26451 6327 17823 18167 31325 31325 -0.016714204534764576 KFSPNTSQF 9 Unmodified _KFSPNTSQF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7633056640625 2 528.261456 1054.50836 0.096959 5.1219E-05 -0.31773 -0.00016784 -0.22077 -0.00011662 528.7632528020483 34.439 0.17265 34.466 34.367 34.54 0.027401 14 7 3 0 0 0 0.18144 1 18177 18177 24.991 5.734 1 2236400 26452 6327 17823 18167 31326 31326 -0.016714204534764576 KFSPNTSQF 9 Unmodified _KFSPNTSQF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 528.261456 1054.50836 0.77674 0.00041032 0.95231 0.00050307 1.729 0.00091339 528.2621579646852 39.002 0.40527 34.551 34.361 34.766 -4.4509 0.049499 0.00030818 NaN 63.961 65 25 3 NaN NaN NaN NaN 0 NaN NaN 0 40516000 26453 6327 17823 18167 -0.016714204534764576 KFSPRPLKF 9 Unmodified _KFSPRPLKF_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.89404296875 3 373.89396 1118.66005 0.0021832 8.1627E-07 0.65176 0.00024369 0.65394 0.0002445 373.89416153111523 34.9 0.26489 34.928 34.796 35.061 0.027401 35 11 4 0 0 0 0.171 1 18418 18418 26.021 10.772 1 6471600 26454 9395 17824 18168 31327 31327 0.10546605364902462 KFSPRPLKF 9 Unmodified _KFSPRPLKF_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8943176269531 3 373.89396 1118.66005 1.054 0.00039408 0.2678 0.00010013 1.3218 0.00049421 373.894001204277 38.824 0.46408 34.373 34.152 34.616 -4.4509 90 29 4 0 0 0 0.171 2 23004 22873;23004 26.021 10.282 1 151020000 26455 9395 17824 18168 31328;31329 31329 0.10546605364902462 KFSPRPLKF 9 Unmodified _KFSPRPLKF_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8936767578125 3 373.89396 1118.66005 1.3337 0.00049865 0.12962 4.8465E-05 1.4633 0.00054711 373.89386166678037 75.847 0.93387 69.672 69.177 70.111 -6.1757 122 50 3 0 0 0 0.037253 4 49374 49374;49493;49607;49730 51.415 25.395 1 40110000 26456 9395 17824 18168 31330;31331;31332;31333 31330 0.10546605364902462 KFSPRPLKF 9 Unmodified _KFSPRPLKF_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.7639770507812 2 560.337301 1118.66005 0.68073 0.00038144 -0.11876 -6.6546E-05 0.56197 0.00031489 560.3370722484698 38.793 0.28589 34.342 34.237 34.523 -4.4509 24 17 2 0 0 0 0.16982 1 22917 22917 22.658 0 1 8582900 26457 9395 17824 18168 31334 31334 0.10546605364902462 KFTPVASKF 9 Unmodified _KFTPVASKF_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7949829101562 2 512.794935 1023.57532 0.36604 0.0001877 0.17233 8.837E-05 0.53836 0.00027607 512.7949866784444 33.818 0.25605 33.847 33.696 33.952 0.028934 30 10 4 0 0 0 0.0086493 1 17774 17774 101.54 57.771 1 11655000 26458 6677;13468 17825 18169 31335 31335 0.0644723482827203 KFTPVASKF 9 Unmodified _KFTPVASKF_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7947998046875 2 512.794935 1023.57532 0.95666 0.00049057 -0.68133 -0.00034938 0.27533 0.00014119 512.7945392825219 37.944 0.43114 33.575 33.334 33.765 -4.3689 60 25 3 0 0 0 0.0086493 2 22375 22234;22375 101.54 51.989 1 28718000 26459 6677;13468 17825 18169 31336;31337 31337 0.0644723482827203 KFVDVAVYF 9 Unmodified _KFVDVAVYF_ 0 0 0 ENSG00000156853|ENST00000287461|ZNF689 ENSG00000156853|ENST00000287461|ZNF689 ENSG00000156853|ENST00000287461|ZNF689 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2947998046875 2 544.294768 1086.57498 1.0559 0.00057474 -0.52952 -0.00028822 0.52642 0.00028653 544.2946521649409 96.212 0.14847 90.037 89.974 90.122 -6.1757 15 8 2 0 0 0 0.047788 1 63757 63757 45.7 13.394 1 7078500 26460 6483 17826 18170 31338 31338 0.03515815108403331 KFVNKSYLL 9 Unmodified _KFVNKSYLL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.3289184570312 2 556.329142 1110.64373 0.67364 0.00037476 0.37613 0.00020925 1.0498 0.00058402 556.3293364331611 40.546 0.22622 40.552 40.424 40.65 0.0050583 28 10 3 0 0 0 0.015688 1 21599 21599 67.838 40.955 1 8881500 26461 5638 17827 18171 31339 31339 0.09283479408145467 KFVNKSYLL 9 Unmodified _KFVNKSYLL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.22607421875 3 371.221853 1110.64373 0.97793 0.00036303 3.7964 0.0014093 4.7743 0.0017723 371.2247043683951 45.396 0.28373 40.441 40.299 40.582 -4.9549 40 19 3 0 0 0 0.1986 1 27806 27806 13.615 6.0059 1 34123000 26462 5638 17827 18171 31340 31340 0.09283479408145467 KFVNKSYLL 9 Unmodified _KFVNKSYLL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 371.221853 1110.64373 0.39994 0.00014847 3.9327 0.0014599 4.3326 0.0016084 371.2243973432157 40.585 0.44969 40.59 40.448 40.898 0.0050545 0.074703 5.969E-05 NaN 13.615 33 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5692500 26463 5638 17827 18171 0.09283479408145467 KFVNKSYLL 9 Unmodified _KFVNKSYLL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 556.329142 1110.64373 0.49036 0.0002728 0.42935 0.00023886 0.91971 0.00051166 556.3291924880654 45.378 0.34344 40.423 40.239 40.582 -4.9549 -0.06422 2.7088E-05 NaN 67.838 48 23 3 NaN NaN NaN NaN 0 NaN NaN 0 28203000 26464 5638 17827 18171 0.09283479408145467 KFVNNLFV 8 Unmodified _KFVNNLFV_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7821655273438 2 490.781828 979.549102 0.7446 0.00036544 -0.25538 -0.00012534 0.48922 0.0002401 490.7817103220226 40.533 0.22622 40.538 40.424 40.65 0.0050545 21 10 3 0 0 0 0.63229 1 21636 21636 23.148 2.6948 1 3283700 26465 35 17828 18172 31341 31341 0.05850965656816243 KFVNNLFV 8 Unmodified _KFVNNLFV_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant;ENST00000407916.2_1_7:55001700-55002231:+|nuORF ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 490.781828 979.549102 0.7446 0.00036544 -0.25538 -0.00012534 0.48922 0.0002401 490.7817103220226 40.533 0.22622 40.538 40.424 40.65 0.0050545 0.055556 -0.00038409 NaN 23.148 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3283700 26466 35 17828 18172 0.05850965656816243 KFVQSGSRLLF 11 Unmodified _KFVQSGSRLLF_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF;PLOD3|p.Q293Gfs*66|1|0.06|ENSG00000106397|chr7:101212844-101212845|-/CC|frameshift_variant ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.9151916503906 3 427.915312 1280.72411 0.97925 0.00041904 1.8389 0.00078689 2.8182 0.0012059 428.25121988182997 50.566 0.26018 50.512 50.388 50.648 -0.053875 24 12 3 0 0 0 0.47711 1 27344 27344 17.572 13.166 1 2029000 26467 2424 17829 18173 31342 31342 0.09497340731195436 KFVTVQATF 9 Unmodified _KFVTVQATF_ 0 0 0 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7928466796875 2 520.792392 1039.57023 0.25573 0.00013318 1.1681 0.00060836 1.4239 0.00074154 520.793039788842 51.984 0.29549 51.925 51.751 52.047 -0.058918 32 13 3 0 0 0 0.010611 1 28113 28113 78.728 26.46 1 9772200 26468 3873 17830 18174 31343 31343 0.05202930965651831 KFVTVQATF 9 Unmodified _KFVTVQATF_ 0 0 0 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.792392 1039.57023 0.48766 0.00025397 0.65449 0.00034085 1.1421 0.00059482 521.2944271116062 52.325 0.1159 51.892 51.809 51.925 -0.43367 -0.016543 -0.00048682 NaN 78.728 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1371700 26469 3873 17830 18174 0.05202930965651831 KFWEHERI 8 Unmodified _KFWEHERI_ 0 0 0 REV__ENSG00000162409|ENST00000371244|PRKAA2 REV__ENSG00000162409|ENST00000371244|PRKAA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5364685058594 3 382.201452 1143.58253 0.61095 0.00023351 1.4476 0.00055329 2.0586 0.0007868 382.20209820215047 72.405 0.26844 71.929 71.752 72.02 -0.47609 29 12 4 0 0 0 8.7369 1 39608 39608 6.7232 0.09279 1 2577700 + 26470 21643 17831 18175 31344 31344 0.01647967428721131 KFYAKPYFL 9 Unmodified _KFYAKPYFL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8867492675781 3 392.886582 1175.63792 -0.21689 -8.5211E-05 0.94391 0.00037085 0.72703 0.00028564 392.88674230368946 53.369 0.22572 53.305 53.198 53.423 -0.063423 18 10 2 0 0 0 0.32871 1 28954 28954 15.248 0 1 2298400 26471 5638 17832 18176 31345 31345 0.05712380896466129 KFYAKPYFL 9 Unmodified _KFYAKPYFL_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.32958984375 2 588.826235 1175.63792 -0.021199 -1.2483E-05 0.54056 0.00031829 0.51936 0.00030581 588.8262829299903 53.388 0.20411 53.325 53.219 53.423 -0.063419 16 9 2 0 0 0 0.10734 1 28955 28955 32.305 18.798 1 2955400 26472 5638 17832 18176 31346 31346 0.05712380896466129 KFYMWFYF 8 Unmodified _KFYMWFYF_ 0 0 0 ENST00000498257.5_1_6:129811877-129812174:+|nuORF ENST00000498257.5_1_6:129811877-129812174:+|nuORF ENST00000498257.5_1_6:129811877-129812174:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5287170410156 3 411.193018 1230.55722 -0.1512 -6.2174E-05 0.28341 0.00011654 0.13221 5.4364E-05 411.19332504916133 15.776 0.17331 15.781 15.684 15.858 0.0050564 29 14 3 0 0 0 0.80975 1 7842 7842 0.45834 0 1 1761500 26473 14418 17833 18177 31347 31347 -0.04883223418073612 KFYPPKVELFF 11 Unmodified _KFYPPKVELFF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2628479003906 3 472.26383 1413.76966 0.12109 5.7188E-05 -0.71084 -0.00033571 -0.58975 -0.00027852 472.26332599236196 77.779 0.31401 77.831 77.723 78.037 0.052452 17 12 2 0 0 0 0.50268 1 42958 42958 16.275 9.2375 1 6141900 26474 4045 17834 18178 31348 31348 0.0793256619353997 KFYPPKVELFF 11 Unmodified _KFYPPKVELFF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2642517089844 3 472.26383 1413.76966 0.50822 0.00024001 0.31285 0.00014775 0.82107 0.00038776 472.2635047547323 98.622 0.16126 92.447 92.389 92.551 -6.1757 24 11 3 0 0 0 0.29354 1 65444 65444 27.129 21.261 1 28687000 26475 4045 17834 18178 31349 31349 0.0793256619353997 KFYPPKVELFF 11 Unmodified _KFYPPKVELFF_ 0 0 0 ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS ENSG00000128050|ENST00000512576|PAICS ENSG00000128050|ENST00000512576|PAICS MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.891357421875 2 707.892106 1413.76966 0.28214 0.00019972 -0.0026267 -1.8594E-06 0.27951 0.00019786 707.8924237767675 98.648 0.1988 92.472 92.365 92.564 -6.1757 25 14 3 0 0 0 0.0057198 1 65474 65474 70.496 43.272 1 33815000 26476 4045 17834 18178 31350 31350 0.0793256619353997 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2725830078125 2 584.27149 1166.52843 0.3728 0.00021781 -0.40663 -0.00023758 -0.033837 -1.977E-05 584.2714851853552 53.774 0.23643 53.322 53.185 53.421 -0.45173 20 11 2 0 0 0 0.028475 1 29081 29081 56.177 34.43 1 7542700 26477 6571;4474 17835 18179 31351 31351 -0.0481766951352256 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2720947265625 2 584.27149 1166.52843 0.24145 0.00014107 0.5041 0.00029453 0.74555 0.0004356 584.2717491537046 53.435 0.20371 53.371 53.241 53.444 -0.063423 15 9 2 0 0 0 0.078314 1 28980 28980 38.176 22.328 1 2611500 26478 6571;4474 17835 18179 31352 31352 -0.0481766951352256 KFYTDPSYF 9 Unmodified _KFYTDPSYF_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2;nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2703857421875 2 584.27149 1166.52843 0.87399 0.00051065 -1.5146 -0.00088491 -0.64056 -0.00037426 584.7722314770572 59.772 0.31792 53.657 53.496 53.814 -6.1147 31 18 2 0 0 0 0.23158 1 38390 38390 20.454 8.213 1 33389000 26479 6571;4474 17835 18179 31353 31353 -0.0481766951352256 KGAAGFSI 8 Unmodified _KGAAGFSI_ 0 0 0 ENSG00000144029|ENST00000272418|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.7113647460938 2 375.710871 749.407189 2.4723 0.00092887 -0.64815 -0.00024352 1.8241 0.00068535 375.7106413749951 62.821 0.47869 56.646 56.378 56.857 -6.1757 56 23 3 0 0 0 0.61462 2 40591 40465;40591 24.674 0 1 34710000 26480 5576 17836 18180 31354;31355 31355 0.022461726344772615 KGAAIFFEF 9 Unmodified _KGAAIFFEF_ 0 0 0 ENSG00000186063|ENST00000340020|AIDA;nc|ENSG00000186063|Q96BJ3-2|AIDA;ENST00000456674.1_1_2:11448506-11449064:+|nuORF;ENST00000514881.1_1_4:159199390-159199825:+|nuORF ENSG00000186063|ENST00000340020|AIDA ENSG00000186063|ENST00000340020|AIDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2738037109375 2 515.273835 1028.53312 1.7552 0.00090441 -1.493 -0.00076928 0.26225 0.00013513 515.2730959823963 82.112 0.39275 82.174 81.954 82.347 0.061996 38 15 3 0 0 0 0.19127 2 45372 45372;45490 24.021 8.7989 1 16809000 26481 9446 17837 18181 31356;31357 31356 0.01999259419903865 KGAAVYFLF 9 Unmodified _KGAAVYFLF_ 0 0 0 ENST00000394464.6_1_5:142780416-142782924:-|nuORF ENST00000394464.6_1_5:142780416-142782924:-|nuORF ENST00000394464.6_1_5:142780416-142782924:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2849426269531 2 508.284203 1014.55385 0.74712 0.00037975 -1.0131 -0.00051494 -0.26597 -0.00013519 508.2840185980178 80.738 0.33173 80.796 80.607 80.939 0.057587 28 12 3 0 0 0 0.23158 1 44625 44625 20.454 5.8719 1 3357000 26482 12740 17838 18182 31358 31358 0.04715849799572425 KGADQGGM 8 Unmodified _KGADQGGM_ 0 0 0 ENST00000559786.1_1_19:42656838-42660162:+|nuORF ENST00000559786.1_1_19:42656838-42660162:+|nuORF ENST00000559786.1_1_19:42656838-42660162:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1734619140625 2 382.173795 762.333038 NaN NaN NaN NaN NaN NaN NaN 17.183 1 17.183 16.683 17.683 0 0 0 0 0.97444 1 8445 8445 0.69038 0 1 26483 15302 17839 18183 31359 31359 -0.057635385193407274 KGAEREVVY 9 Unmodified _KGAEREVVY_ 0 0 0 REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF REV__ENST00000478441.1_1_3:186333572-186335301:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7830200195312 2 525.782556 1049.55056 0.97121 0.00051065 -0.16771 -8.8181E-05 0.8035 0.00042246 525.7844746310664 70.764 1.0498 70.8 70.312 71.361 0.035507 165 47 5 0 0 0 0.45045 1 38880 38880 10.074 1.4806 1 6905300 + 26484 27637 17840 18184 31360 31360 0.027765549549030766 KGAKGAMG 8 Unmodified _KGAKGAMG_ 0 0 0 nc|ENSG00000019169|Q9UEW3-2|MARCO;ENSG00000019169|ENST00000327097|MARCO nc|ENSG00000019169|Q9UEW3-2|MARCO nc|ENSG00000019169|Q9UEW3-2|MARCO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1983337402344 2 360.197074 718.379594 0.35365 0.00012738 1.9528 0.0007034 2.3065 0.00083078 360.1978457733883 49.214 0.2481 49.171 49.027 49.275 -0.04369 15 11 2 0 0 0 0.81107 1 26596 26596 0 0 1 1377100 26485 515 17841 18185 31361 31361 0.009139461025938544 KGAKGRGM 8 Unmodified _KGAKGRGM_ 0 0 0 ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 402.2271118164062 2 402.729072 803.443591 1.6827 0.00067767 -0.25508 -0.00010273 1.4276 0.00057495 402.72866388450944 109.45 0.073936 103.28 103.27 103.34 -6.1757 19 16 2 0 0 0 8.7369 1 73100 73100 0.69038 0.69038 1 1807000 26486 3563 17842 18186 31362 31362 0.034007262595423526 KGALAQKFM 9 Unmodified _KGALAQKFM_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;ENST00000399096.2_1_17:18882860-18907015:-|nuORF ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2796936035156 2 497.281137 992.547722 0.35048 0.00017429 -1.2064 -0.00059991 -0.8559 -0.00042562 497.28065123752964 48.913 0.19293 48.87 48.734 48.927 -0.04369 23 9 4 0 0 0 0.2143 1 26377 26377 21.747 4.8044 1 9676700 26487 9665 17843 18187 31363 31363 0.05115008296399992 KGAQGAPF 8 Unmodified _KGAQGAPF_ 0 0 0 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 MSMS AL20221201_MKP_PDAC_01 4 388.2085876464844 2 388.208495 774.402438 NaN NaN NaN NaN NaN NaN NaN 93.296 1 87.12 86.62 87.62 -6.1757 0 0 0 0.95973 1 61743 61743 8.5933 3.3626 1 26488 16370 17844 18188 31364 31364 0.0062128849172040645 KGASGDHVY 9 Unmodified _KGASGDHVY_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 467.2635803222656 2 467.224874 932.435195 0.8715 0.00040719 -1.4752 -0.00068925 -0.60371 -0.00028207 467.2242027623373 59.464 0.42554 53.349 53.11 53.536 -6.1147 32 22 2 0 0 0 0.20727 1 38223 38223 7.9102 1.5561 1 21388000 26489 9970 17845 18189 31365 31365 -0.03372549176094708 KGCNDFDYLTF 11 Unmodified _KGCNDFDYLTF_ 0 0 0 REV__nc|ENSG00000145506|Q969F2-2|NKD2 REV__nc|ENSG00000145506|Q969F2-2|NKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.7877197265625 2 661.789721 1321.56489 0.12866 8.5148E-05 -2.7668 -0.001831 -2.6381 -0.0017459 661.7877610733406 99.888 0.12847 93.712 93.652 93.78 -6.1757 17 9 2 0 0 0 0.39949 1 66661 66661 21.537 7.6309 1 52630000 + 26490 20778 17846 18190 31366 31366 -0.08303160679156463 KGCNDFDYLTF 11 Unmodified _KGCNDFDYLTF_ 0 0 0 REV__nc|ENSG00000145506|Q969F2-2|NKD2 REV__nc|ENSG00000145506|Q969F2-2|NKD2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 661.789721 1321.56489 0.12866 8.5148E-05 -2.7668 -0.001831 -2.6381 -0.0017459 661.7877610733406 99.888 0.12847 93.712 93.652 93.78 -6.1757 0.08868 0.00028679 NaN 21.537 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 52630000 + 26491 20778 17846 18190 -0.08303160679156463 KGCRRQHYQY 10 Unmodified _KGCRRQHYQY_ 0 0 0 REV__ENSG00000196700|ENST00000369888|ZNF512B REV__ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.8272705078125 2 669.827837 1337.64112 0.13359 8.9485E-05 -1.4495 -0.0009709 -1.3159 -0.00088142 669.8269129878126 46.623 0.25088 41.542 41.48 41.731 -5.0805 72 57 2 0 0 0 0.074936 1 28881 28881 52.268 18.823 1 55454000 + 26492 23861 17847 18191 31367 31367 -0.014192992684684214 KGCRRQHYQY 10 Unmodified _KGCRRQHYQY_ 0 0 0 REV__ENSG00000196700|ENST00000369888|ZNF512B REV__ENSG00000196700|ENST00000369888|ZNF512B MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 669.827837 1337.64112 0.13359 8.9485E-05 -1.4495 -0.0009709 -1.3159 -0.00088142 669.8269129878126 46.623 0.25088 41.542 41.48 41.731 -5.0805 0.18369 -0.00025708 NaN 52.268 72 57 2 NaN NaN NaN NaN 0 NaN NaN 0 55454000 + 26493 23861 17847 18191 -0.014192992684684214 KGDFQYHMTQH 11 Unmodified _KGDFQYHMTQH_ 0 0 0 REV__ENSG00000115998|ENST00000264434|C2orf42 REV__ENSG00000115998|ENST00000264434|C2orf42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.8780822753906 3 464.543549 1390.60882 0.75505 0.00035075 -0.16308 -7.5758E-05 0.59197 0.00027499 464.54353264662495 35.192 0.3764 31.097 30.898 31.274 -4.0951 63 21 4 0 0 0 0.63534 2 20326 20326;20455 5.1984 1.6058 1 37841000 + 26494 19019 17848 18192 31368;31369 31368 -0.07086131462119738 KGDMRKCPF 9 Unmodified _KGDMRKCPF_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MSMS AL20221201_MKP_PDAC_01 4 541.2728881835938 2 541.267704 1080.52086 NaN NaN NaN NaN NaN NaN NaN 40.791 1 36.262 35.762 36.762 -4.5294 0 0 0 0.15549 1 24406 24406 36.127 13.391 1 26495 2138 17849 18193 31370 31370 -0.01618423586432982 KGDPVYVYY 9 Unmodified _KGDPVYVYY_ 0 0 0 nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-3|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2763671875 2 552.274032 1102.53351 NaN NaN NaN NaN NaN NaN NaN 24.191 1 24.191 23.691 24.691 0 0 0 0 0.79771 1 12353 12353 6.2058 0.97511 1 26496 6317 17850 18194 31371 31371 -0.013653656509177381 KGEHSIVYLK 10 Unmodified _KGEHSIVYLK_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2987060546875 2 587.334956 1172.65536 -0.10284 -6.0399E-05 -0.28117 -0.00016514 -0.38401 -0.00022554 587.3350042113066 55.743 0.23284 55.675 55.569 55.801 -0.068737 23 11 3 0 0 0 0.22489 1 30251 30251 13.042 0.80181 1 14535000 26497 275 17851 18195 31372 31372 0.07593676431451968 KGEILSKF 8 Unmodified _KGEILSKF_ 0 0 0 REV__ENSG00000159086|ENST00000331923|PAXBP1;REV__ENST00000497873.1_1_21:34107263-34123563:-|nuORF REV__ENSG00000159086|ENST00000331923|PAXBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2889709472656 2 461.273835 920.533118 0.47977 0.00022131 -2.0264 -0.00093471 -1.5466 -0.0007134 461.27218994169255 69.995 0.51713 69.995 69.816 70.333 0 106 56 2 0 0 0 8.7369 1 38945 38945 16.942 0 1 13141000 + 26498 21458;27984 17852 18196 31373 31373 0.06967259419900529 KGELEKLM 8 Unmodified _KGELEKLM_ 0 0 0 REV__ENSG00000135968|ENST00000309863|GCC2 REV__ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2651977539062 2 474.265153 946.515753 0.10846 5.144E-05 -0.040398 -1.916E-05 0.068065 3.2281E-05 474.2653596895165 38.77 0.19263 38.483 38.415 38.608 -0.28687 26 8 5 0 0 0 0.67481 1 20484 20484 19.439 1.304 1 2270800 + 26499 20123 17853 18197 31374 31374 0.04035595822585947 KGEVRKKHLP 10 Unmodified _KGEVRKKHLP_ 0 0 0 REV__ENST00000465961.1_1_3:136067979-136076626:-|nuORF REV__ENST00000465961.1_1_3:136067979-136076626:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3682861328125 2 596.369664 1190.72478 0.29098 0.00017353 -0.93338 -0.00055664 -0.6424 -0.00038311 596.8707252001724 101.85 0.33305 95.676 95.606 95.939 -6.1757 43 17 3 0 0 0 0.69917 1 68471 68471 2.9952 0.93549 1 27750000 + 26500 27401 17854 18198 31375 31375 0.13704180170884683 KGFGHGAG 8 Unmodified _KGFGHGAG_ 0 0 0 ENSG00000142409|ENST00000610935|ZNF787 ENSG00000142409|ENST00000610935|ZNF787 ENSG00000142409|ENST00000610935|ZNF787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.6858825683594 2 365.685188 729.355822 NaN NaN NaN NaN NaN NaN NaN 17.774 1 17.788 17.288 18.288 0.013865 0 0 0 0.97444 1 8864 8864 0 0 1 26501 5413 17855 18199 31376 31376 -0.019681513395653383 KGFMHYYF 8 Unmodified _KGFMHYYF_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7552490234375 2 546.752213 1091.48987 0.71558 0.00039125 1.7676 0.00096646 2.4832 0.0013577 546.7529233045861 80.691 0.27867 80.199 80.055 80.334 -0.49247 19 11 2 0 0 0 0.78849 1 44174 44174 9.3474 3.587 1 1207700 + 26502 24200 17856 18200 31377 31377 -0.052212536290426215 KGFSRRADL 9 Unmodified _KGFSRRADL_ 0 0 0 ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226 ENST00000588883.5_1_19:44679604-44681824:+|nuORF ENST00000588883.5_1_19:44679604-44681824:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7960815429688 2 525.296165 1048.57778 0.80761 0.00042424 0.035926 1.8872E-05 0.84354 0.00044311 525.2972055648063 50.886 0.36542 50.886 50.744 51.109 0 49 21 3 0 0 0 0.2143 1 28136 28136 21.747 9.2151 1 16926000 26503 7605 17857 18201 31378 31378 0.05543083285942885 KGGAAHSP 8 Unmodified _KGGAAHSP_ 0 0 0 ENST00000305105.2_1_7:100867241-100867451:+|nuORF ENST00000305105.2_1_7:100867241-100867451:+|nuORF ENST00000305105.2_1_7:100867241-100867451:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 724.3096923828125 1 724.373663 723.366387 -0.055899 -4.0492E-05 1.0536 0.00076322 0.99772 0.00072272 724.3742658133317 37.723 0.16111 37.723 37.625 37.786 0 11 7 2 0 0 0 8.7369 1 20050 20050 7.9102 3.1541 1 813290 26504 11610 17858 18202 31379 31379 -0.00636168685150551 KGGCPAVR 8 Unmodified _KGGCPAVR_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;ENST00000479510.2_1_6:33387852-33406697:+|nuORF nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2220458984375 2 394.215798 786.417042 -0.36391 -0.00014346 -0.64618 -0.00025473 -1.0101 -0.00039819 394.21512797258913 36.893 0.48894 36.914 36.706 37.195 0.021545 71 22 4 0 0 0 0.80722 1 19465 19465 2.3027 1.5091 1 35484000 26505 9937 17859 18203 31380 31380 0.015290373681978053 KGGCPAVR 8 Unmodified _KGGCPAVR_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;ENST00000479510.2_1_6:33387852-33406697:+|nuORF nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.215798 786.417042 0.27289 0.00010758 -2.5875 -0.00102 -2.3146 -0.00091245 394.2146885811111 36.968 0.30039 36.968 36.796 37.097 0 0.013575 -0.00048971 NaN 2.3027 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 11046000 26506 9937 17859 18203 0.015290373681978053 KGGCPAVR 8 Unmodified _KGGCPAVR_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1;ENST00000479510.2_1_6:33387852-33406697:+|nuORF nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.215798 786.417042 -0.18698 -7.371E-05 -1.4655 -0.00057772 -1.6525 -0.00065143 394.21516135484524 37.252 0.27102 36.981 36.821 37.092 -0.27133 0.026516 0.00039491 NaN 2.3027 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2882200 26507 9937 17859 18203 0.015290373681978053 KGGGAKRA 8 Unmodified _KGGGAKRA_ 0 0 0 REV__ENST00000470041.5_1_1:206136994-206141493:+|nuORF REV__ENST00000470041.5_1_1:206136994-206141493:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 372.7291870117188 2 372.727387 743.44022 NaN NaN NaN NaN NaN NaN NaN 34.95 1 30.855 30.355 31.355 -4.0951 0 0 0 0.97444 1 20211 20211 0.69038 0 1 + 26508 27471 17860 18204 31381 31381 0.05823799477184366 KGGLLLEY 8 Unmodified _KGGLLLEY_ 0 0 0 ENST00000310454.10_1_2:157426665-157427646:+|nuORF ENST00000310454.10_1_2:157426665-157427646:+|nuORF ENST00000310454.10_1_2:157426665-157427646:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 892.5142822265625 1 892.513845 891.506569 -0.24225 -0.00021621 0.51504 0.00045968 0.27279 0.00024347 892.5142022796005 77.023 1.1208 70.848 70.431 71.551 -6.1757 149 62 3 0 0 0 0.31612 1 50288 50288 53.576 0 1 87415000 26509 11679 17861 18205 31382 31382 0.05647570528560664 KGGNKGVTRFC 11 Unmodified _KGGNKGVTRFC_ 0 0 0 REV__ENST00000522712.6_1_11:46958356-47074212:+|nuORF REV__ENST00000522712.6_1_11:46958356-47074212:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2423706054688 3 389.54148 1165.60261 0.90613 0.00035298 0.73603 0.00028671 1.6422 0.00063969 389.5416680603592 63.93 0.29518 63.92 63.741 64.037 -0.010532 31 14 3 0 0 0 0.30346 1 34901 34901 2.084 0.89063 1 4701000 + 26510 28304 17862 18206 31383 31383 0.026433950970385922 KGGPLLSG 8 Unmodified _KGGPLLSG_ 0 0 0 REV__nc|ENSG00000290831|Q63ZY6-6|NSUN5P2 REV__nc|ENSG00000290831|Q63ZY6-6|NSUN5P2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7200012207031 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 27.234 1 27.262 26.762 27.762 0.028664 0 0 0 0.97444 1 14149 14149 0.69038 0 1 + 26511 26356 17863 18207 31384 31384 0.04822459151523617 KGGPLLSG 8 Unmodified _KGGPLLSG_ 0 0 0 REV__nc|ENSG00000290831|Q63ZY6-6|NSUN5P2 REV__nc|ENSG00000290831|Q63ZY6-6|NSUN5P2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7202453613281 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 38.224 1 38.241 37.741 38.741 0.01704 0 0 0 0.97444 1 20320 20320 0.69038 0 1 + 26512 26356 17863 18207 31385 31385 0.04822459151523617 KGGPWKNDQH 10 Unmodified _KGGPWKNDQH_ 0 0 0 ENST00000541477.5_1_12:7032227-7032275:+|nuORF ENST00000541477.5_1_12:7032227-7032275:+|nuORF ENST00000541477.5_1_12:7032227-7032275:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8628234863281 3 389.528228 1165.56285 -0.0076791 -2.9912E-06 -0.42438 -0.00016531 -0.43205 -0.0001683 389.5282871278343 39.962 0.31787 39.962 39.792 40.11 0 59 15 5 0 0 0 0.66569 1 21408 21408 3.5871 0 1 60064000 26513 15048 17864 18208 31386 31386 -0.013304085820664113 KGGRLRVS 8 Unmodified _KGGRLRVS_ 0 0 0 REV__ENSG00000164099|ENST00000296498|PRSS12 REV__ENSG00000164099|ENST00000296498|PRSS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7752685546875 2 436.774868 871.535184 0.22814 9.9645E-05 0.21009 9.1764E-05 0.43823 0.00019141 436.77493570162557 78.997 0.39389 78.997 78.809 79.203 0 34 18 3 0 0 0 0.80992 1 43847 43847 0.69038 0 1 1469000 + 26514 21867 17865 18209 31387 31387 0.09427732948381617 KGGVGRVR 8 Unmodified _KGGVGRVR_ 0 0 0 ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.7620849609375 2 414.761761 827.508969 0.033339 1.3828E-05 -0.63237 -0.00026228 -0.59903 -0.00024846 414.7613858043766 76.122 0.81001 76.17 75.864 76.674 0.047951 97 34 4 0 0 0 0.80992 1 41878 41878 0.69038 0 1 295540000 26515 15518 17866 18210 31388 31388 0.08831463776891724 KGGVGRVR 8 Unmodified _KGGVGRVR_ 0 0 0 ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 414.761761 827.508969 0.0012349 5.122E-07 0.21056 8.7334E-05 0.2118 8.7846E-05 414.7618717502015 75.955 0.32774 75.955 75.672 75.999 0 -0.12188 0.00032367 NaN 0.69038 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1795700 26516 15518 17866 18210 0.08831463776891724 KGGVGRVR 8 Unmodified _KGGVGRVR_ 0 0 0 ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF ENST00000575842.5_1_17:79479547-79479733:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 414.761761 827.508969 -0.0023467 -9.7331E-07 -0.13629 -5.6528E-05 -0.13864 -5.7501E-05 414.7616023710155 76.585 0.45617 76.105 75.932 76.388 -0.47945 0.028536 3.5947E-05 NaN 0.69038 53 28 3 NaN NaN NaN NaN 0 NaN NaN 0 5904700 26517 15518 17866 18210 0.08831463776891724 KGGVTVPA 8 Unmodified _KGGVTVPA_ 0 0 0 REV__ENSG00000104848|ENST00000221444|KCNA7 REV__ENSG00000104848|ENST00000221444|KCNA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7197570800781 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 29.155 1 29.186 28.686 29.686 0.030106 0 0 0 0.97444 1 15203 15203 2.5775 0.27475 1 + 26518 18378 17867 18211 31389 31389 0.048224591515122484 KGGWGPLR 8 Unmodified _KGGWGPLR_ 0 0 0 REV__nc|ENSG00000003393|Q96Q42-3|ALS2 REV__nc|ENSG00000003393|Q96Q42-3|ALS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7521362304688 2 435.750862 869.487171 NaN NaN NaN NaN NaN NaN NaN 50.982 1 50.929 50.429 51.429 -0.053871 0 0 0 0.97444 1 27583 27583 4.756 0 1 + 26519 16937 17868 18212 31390 31390 0.047206590283281 KGIGPPGF 8 Unmodified _KGIGPPGF_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.1842956542969 2 386.721239 771.427924 2.1342 0.00082534 -1.4569 -0.00056342 0.67728 0.00026192 386.7209918467929 47.688 0.076397 42.454 42.42 42.496 -5.2339 7 4 2 0 0 0 8.7369 1 29624 29624 6.3541 0 1 2975500 + 26520 23685 17869 18213 31391 31391 0.03306763014131775 KGKCRFRAI 9 Unmodified _KGKCRFRAI_ 0 0 0 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 ENSG00000147183|ENST00000276127|CPXCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8168334960938 2 539.818753 1077.62295 0.38631 0.00020854 -4.3538 -0.0023503 -3.9675 -0.0021417 539.8160085129583 45.94 0.19461 45.912 45.826 46.02 -0.028011 13 8 2 0 0 0 0.32235 1 24739 24739 16.942 3.8998 1 1076400 26521 5833 17870 18214 31392 31392 0.0872461054748328 KGKDDEIY 8 Unmodified _KGKDDEIY_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 483.7492980957031 2 484.24019 966.465826 0.71238 0.00034496 -0.80982 -0.00039215 -0.097437 -4.7183E-05 484.2395104189139 55.817 0.23943 49.896 49.766 50.006 -5.9211 27 13 4 0 0 0 8.7369 1 35484 35484 19.439 0 1 16098000 26522 9690 17871 18215 31393 31393 -0.01874815581720668 KGKENRLCY 9 Unmodified _KGKENRLCY_ 0 0 0 ENST00000467405.1_1_10:14867493-14870188:-|nuORF;ENSG00000185267|ENST00000465530|CDNF ENST00000467405.1_1_10:14867493-14870188:-|nuORF ENST00000467405.1_1_10:14867493-14870188:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2572631835938 2 555.789858 1109.56516 0.49046 0.00027259 -3.6114 -0.0020072 -3.1209 -0.0017346 555.788238616573 38.018 0.22338 38.018 37.905 38.129 0 19 10 2 0 0 0 0.18118 1 20325 20325 19.257 8.4331 1 1504700 26523 9354 17872 18216 31394 31394 0.014763038313958532 KGKKGAEV 8 Unmodified _KGKKGAEV_ 0 0 0 ENST00000490638.5_1_9:35660467-35660770:-|nuORF ENST00000490638.5_1_9:35660467-35660770:-|nuORF ENST00000490638.5_1_9:35660467-35660770:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 817.4962768554688 1 816.493778 815.486502 1.8075 0.0014758 0.017877 1.4597E-05 1.8254 0.0014904 816.4935910597744 103.36 0.061264 97.187 97.163 97.224 -6.1757 22 12 2 0 0 0 0.80676 1 69300 69300 2.5775 0 1 10518000 26524 14263 17873 18217 31395 31395 0.07137819588615457 KGKKIRKPRTI 11 Unmodified _KGKKIRKPRTI_ 0 0 0 nc|ENSG00000006377|P56179|DLX6;ENST00000493273.2_1_7:96636558-96639356:+|nuORF;nc|ENSG00000006377|P56179-2|DLX6;ENSG00000006377|ENST00000518156|DLX6;ENSG00000144355|ENST00000361725|DLX1;ENST00000409492.1_1_2:172950333-172951818:+|nuORF nc|ENSG00000006377|P56179|DLX6 nc|ENSG00000006377|P56179|DLX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.3003540039062 3 442.301501 1323.88267 NaN NaN NaN NaN NaN NaN NaN 0.12793 1 0.12793 -0.37207 0.62793 0 0 0 0 0.94337 1 63 63 0.094841 0.021578 1 26525 333 17874 18218 31396 31396 0.23368679430109296 KGKKSRQLI 9 Unmodified _KGKKSRQLI_ 0 0 0 REV__ENSG00000178035|ENST00000326739|IMPDH2;REV__nc|ENSG00000106348|P20839-3|IMPDH1 REV__ENSG00000178035|ENST00000326739|IMPDH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3466796875 2 529.345658 1056.67676 NaN NaN NaN NaN NaN NaN NaN 19.247 1 19.255 18.755 19.755 0.0078487 0 0 0 0.85898 1 9785 9785 0.40072 0.093686 1 + 26526 23019;18502 17875 18219 31397 31397 0.15069106250848563 KGKLLRTLD 9 Unmodified _KGKLLRTLD_ 0 0 0 REV__ENST00000469758.5_1_10:120085736-120095927:-|nuORF REV__ENST00000469758.5_1_10:120085736-120095927:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3331298828125 2 522.332216 1042.64988 1.3919 0.00072704 -0.98832 -0.00051623 0.40359 0.00021081 522.3314823353392 102.77 0.19159 96.593 96.481 96.672 -6.1757 67 52 2 0 0 0 0.59532 1 68938 68938 1.6526 0.17072 1 8950400 + 26527 27470 17876 18220 31398 31398 0.13025997639647358 KGKRPRSQQ 9 Unmodified _KGKRPRSQQ_ 0 0 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5;ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.216552734375 3 362.215984 1083.62612 NaN NaN NaN NaN NaN NaN NaN 15.399 1 15.399 14.899 15.899 0 0 0 0 0.85525 1 7413 7413 0.86438 0.40604 1 26528 2573 17877 18221 31399 31399 0.08765576925839014 KGKVILSMLV 10 Unmodified _KGKVILSMLV_ 0 0 0 ENSG00000204136|ENST00000481799|GGTA1;ENST00000495328.5_2_9:124218117-124241469:-|nuORF;ENST00000481534.5_2_9:124214542-124241469:-|nuORF;ENST00000481799.5_2_9:124218117-124262303:-|nuORF ENSG00000204136|ENST00000481799|GGTA1 ENSG00000204136|ENST00000481799|GGTA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3529663085938 2 544.34902 1086.68349 1.4673 0.00079875 4.0633 0.0022119 5.5307 0.0030106 544.3513379931777 104.3 0.11185 98.128 98.069 98.181 -6.1757 32 14 3 0 0 0 0.71123 1 69858 69858 1.6526 0.96225 1 10181000 26529 10244 17878 18222 31400 31400 0.14361283087191623 KGKWPSAR 8 Unmodified _KGKWPSAR_ 0 0 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7532043457031 2 465.269419 928.524284 -0.060934 -2.8351E-05 -0.34288 -0.00015953 -0.40381 -0.00018788 465.26899335216257 28.763 0.19903 28.763 28.662 28.861 0 13 9 2 0 0 0 8.7369 1 14846 14846 8.5933 0 1 2895000 26530 8666 17879 18223 31401 31401 0.05716330574080075 KGLFNEDNI 9 Unmodified _KGLFNEDNI_ 0 0 0 REV__ENSG00000165632|ENST00000344293|TAF3 REV__ENSG00000165632|ENST00000344293|TAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2820434570312 2 525.266739 1048.51892 0.85031 0.00044664 -1.9246 -0.0010109 -1.0743 -0.0005643 525.2661408665508 38.768 0.28217 38.768 38.598 38.88 0 32 12 3 0 0 0 0.43463 1 20678 20678 10.824 2.2306 1 7896900 + 26531 22028 17880 18224 31402 31402 -0.00339437799038933 KGLGFMKNIF 10 Unmodified _KGLGFMKNIF_ 0 0 0 ENST00000418970.6_1_2:7055976-7056084:-|nuORF ENST00000418970.6_1_2:7055976-7056084:-|nuORF ENST00000418970.6_1_2:7055976-7056084:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8270263671875 2 577.823169 1153.63179 1.404 0.00081125 4.3319 0.0025031 5.7359 0.0033143 577.8260829449495 71.183 0.50716 71.222 70.982 71.49 0.039024 40 22 3 0 0 0 0.62068 1 39181 39181 10.074 1.4806 1 3115700 26532 13080 17881 18225 31403 31403 0.06111539393282328 KGLGNENV 8 Unmodified _KGLGNENV_ 0 0 0 REV__nc|ENSG00000114416|P51114-2|FXR1 REV__nc|ENSG00000114416|P51114-2|FXR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.7216186523438 2 415.721967 829.429381 NaN NaN NaN NaN NaN NaN NaN 53.657 1 53.594 53.094 54.094 -0.063423 0 0 0 0.97444 1 29115 29115 5.2307 0 1 + 26533 29583 17882 18226 31404 31404 0.00784352312223291 KGLIRILRGP 10 Unmodified _KGLIRILRGP_ 0 0 0 ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;ENST00000587856.1_1_17:43318772-43319102:+|nuORF ENSG00000184922|ENST00000331495|FMNL1 ENSG00000184922|ENST00000331495|FMNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.9207458496094 3 374.920509 1121.7397 1.3247 0.00049665 -0.57666 -0.0002162 0.74801 0.00028045 374.92037457811136 80.366 0.18703 74.19 74.071 74.258 -6.1757 16 10 2 0 0 0 0.67755 1 52748 52748 5.4027 1.2132 1 6869300 26534 9303 17883 18227 31405 31405 0.18369672038897988 KGLLIEYLI 9 Unmodified _KGLLIEYLI_ 0 0 0 REV__nc|ENSG00000211751|P01850|TRBC1 REV__nc|ENSG00000211751|P01850|TRBC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3357543945312 2 531.333893 1060.65323 0.83527 0.00044381 1.3626 0.00072398 2.1978 0.0011678 531.334584744409 80.416 0.30314 79.926 79.755 80.058 -0.49014 23 11 3 0 0 0 0.41742 1 44032 44032 11.64 0.81637 1 841020 + 26535 29927 17884 18228 31406 31406 0.12533247693659177 KGLVVLRH 8 Unmodified _KGLVVLRH_ 0 0 0 REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.30419921875 2 461.303262 920.59197 1.581 0.00072932 1.4786 0.0006821 3.0596 0.0014114 461.30427185789966 104.39 0.054474 98.213 98.174 98.229 -6.1757 21 15 2 0 0 0 0.80992 1 69907 69907 0.69038 0 1 6117300 + 26536 18980 17885 18229 31407 31407 0.12849780504893715 KGNNWRRKRRW 11 Unmodified _KGNNWRRKRRW_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.9644165039062 3 519.630903 1555.87088 -0.12874 -6.69E-05 -1.9978 -0.0010381 -2.1265 -0.001105 519.6297216225664 20.931 0.083075 20.931 20.896 20.979 0 27 18 2 0 0 0 0.74046 1 10558 10558 0.45452 0.35968 1 2080300 + 26537 28735 17886 18230 31408 31408 0.11517875459458082 KGNSLQEIL 9 Unmodified _KGNSLQEIL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7486572265625 2 501.284931 1000.55531 0.99656 0.00049956 -1.6936 -0.00084899 -0.69707 -0.00034943 501.2833393058702 46.322 0.29515 46.322 46.186 46.481 0 18 13 2 0 0 0 0.18482 1 25340 25340 13.042 4.2971 1 2408100 26538 3152 17887 18231 31409 31409 0.055054390976465584 KGPAFRIKR 9 Unmodified _KGPAFRIKR_ 0 0 0 REV__ENST00000478567.5_1_10:122645388-122659588:+|nuORF REV__ENST00000478567.5_1_10:122645388-122659588:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 536.8400268554688 2 536.840542 1071.66653 NaN NaN NaN NaN NaN NaN NaN 107.94 1 101.77 101.27 102.27 -6.1757 0 0 0 0.85798 1 72165 72165 0.52476 0.12405 1 + 26539 19224 17888 18232 31410 31410 0.13356543316285752 KGPKLVKYI 9 Unmodified _KGPKLVKYI_ 0 0 0 REV__ENSG00000206562|ENST00000383790|METTL6 REV__ENSG00000206562|ENST00000383790|METTL6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.83935546875 2 523.342052 1044.66955 1.6488 0.00086291 -2.8386 -0.0014856 -1.1898 -0.00062266 523.3407142070051 107.46 0.03096 101.28 101.28 101.31 -6.1757 10 7 2 0 0 0 0.21893 1 71881 71881 0.52476 0 1 1464400 + 26540 24261 17889 18233 31411 31411 0.14900373650402798 KGPKTHAF 8 Unmodified _KGPKTHAF_ 0 0 0 REV__ENST00000368877.9_1_6:111196076-111196142:+|nuORF REV__ENST00000368877.9_1_6:111196076-111196142:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.251220703125 2 443.250695 884.486836 1.2609 0.00055889 -0.25129 -0.00011139 1.0096 0.0004475 443.25062296113805 30.695 0.36531 27.198 26.956 27.321 -3.497 37 17 3 0 0 0 0.6895 1 17376 17376 18.135 5.6034 1 45209000 + 26541 26023 17890 18234 31412 31412 0.0399723930846676 KGPLLQKLRL 10 Unmodified _KGPLLQKLRL_ 0 0 0 REV__ENST00000553415.5_1_14:73876696-73925752:-|nuORF REV__ENST00000553415.5_1_14:73876696-73925752:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 583.3920288085938 2 583.392608 1164.77066 NaN NaN NaN NaN NaN NaN NaN 104.31 1 98.134 97.634 98.634 -6.1757 0 0 0 1.0024 1 69866 69866 0.40072 0.093686 1 + 26542 28736 17891 18235 31413 31413 0.19486825353124004 KGPRKGWC 8 Unmodified _KGPRKGWC_ 0 0 0 REV__ENST00000496632.1_1_1:161094264-161100812:-|nuORF REV__ENST00000496632.1_1_1:161094264-161100812:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2505187988281 2 466.250172 930.48579 0.5327 0.00024837 -0.14272 -6.6544E-05 0.38998 0.00018183 466.25012001981344 97.282 0.68275 97.282 96.972 97.654 0 58 32 2 0 0 0 0.80975 1 53730 53730 0.79363 0 1 9378000 + 26543 27968 17892 18236 31414 31414 0.0177670166790449 KGPRKRIT 8 Unmodified _KGPRKRIT_ 0 0 0 ENST00000306467.9_1_5:122714114-122717850:-|nuORF ENST00000306467.9_1_5:122714114-122717850:-|nuORF ENST00000306467.9_1_5:122714114-122717850:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.3125305175781 2 478.311618 954.608683 NaN NaN NaN NaN NaN NaN NaN 104.76 1 98.58 98.08 99.08 -6.1757 0 0 0 0.97444 1 70131 70131 2.3027 0.65011 1 26544 11631 17893 18237 31415 31415 0.12956281390825097 KGPTRLKR 8 Unmodified _KGPTRLKR_ 0 0 0 REV__nc|ENSG00000076248|P13051-2|UNG REV__nc|ENSG00000076248|P13051-2|UNG MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3131713867188 2 478.311618 954.608683 1.6414 0.00078511 0.63002 0.00030135 2.2714 0.0010865 478.31292997676275 109.91 0.94933 103.74 102.87 103.82 -6.1757 406 209 3 0 0 0 0.80992 1 73103 73103 0.69038 0 1 4378400 + 26545 29506 17894 18238 31416 31416 0.12956281390847835 KGQFQHQDI 9 Unmodified _KGQFQHQDI_ 0 0 0 ENSG00000267041|ENST00000591344|ZNF850 ENSG00000267041|ENST00000591344|ZNF850 ENSG00000267041|ENST00000591344|ZNF850 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7763061523438 2 550.777805 1099.54106 NaN NaN NaN NaN NaN NaN NaN 28.006 1 28.006 27.506 28.506 0 0 0 0 0.41346 1 14447 14447 19.257 1.122 1 26546 10866 17895 18239 31417 31417 -0.004732133306333708 KGRDYWKF 8 Unmodified _KGRDYWKF_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1946411132812 3 367.194298 1098.56106 1.3303 0.00048847 -0.023561 -8.6515E-06 1.3067 0.00047982 367.1942618932961 42.113 0.39773 37.428 37.234 37.632 -4.6846 45 24 2 0 0 0 0.42423 1 25324 25324 34.402 15.04 1 32483000 26547 3914 17896 18240 31418 31418 0.015725823999900967 KGRGRAIA 8 Unmodified _KGRGRAIA_ 0 0 0 REV__ENSG00000117318|ENST00000374561|ID3 REV__ENSG00000117318|ENST00000374561|ID3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.761474609375 2 414.761761 827.508969 0.86875 0.00036033 -0.30062 -0.00012469 0.56813 0.00023564 414.7615265682867 79.488 0.57537 78.999 78.66 79.235 -0.48932 40 24 2 0 0 0 0.81107 1 43453 43453 0 0 1 2267800 + 26548 19097 17897 18241 31419 31419 0.08831463776868986 KGRGRAIA 8 Unmodified _KGRGRAIA_ 0 0 0 REV__ENSG00000117318|ENST00000374561|ID3 REV__ENSG00000117318|ENST00000374561|ID3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.76123046875 2 414.761761 827.508969 0.033339 1.3828E-05 -0.63237 -0.00026228 -0.59903 -0.00024846 414.7613858043766 76.122 0.81001 76.17 75.864 76.674 0.047951 97 34 4 0 0 0 0.81107 3 41988 41988;42097;42206 0 0 1 295540000 + 26549 19097 17897 18241 31420;31421;31422 31420 0.08831463776868986 KGRGRAIA 8 Unmodified _KGRGRAIA_ 0 0 0 REV__ENSG00000117318|ENST00000374561|ID3 REV__ENSG00000117318|ENST00000374561|ID3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 414.761761 827.508969 0.86875 0.00036033 -0.30062 -0.00012469 0.56813 0.00023564 414.7615265682867 79.488 0.57537 78.999 78.66 79.235 -0.48932 0 0 NaN 0 40 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2267800 + 26550 19097 17897 18241 0.08831463776868986 KGRGRGPA 8 Unmodified _KGRGRGPA_ 0 0 0 REV__ENST00000571836.2_1_17:2299911-2300016:-|nuORF REV__ENST00000571836.2_1_17:2299911-2300016:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.7386169433594 2 399.738286 797.462019 0.74402 0.00029741 -0.084961 -3.3962E-05 0.65906 0.00026345 399.73816611400616 74.46 0.56718 73.984 73.69 74.258 -0.47588 72 23 4 0 0 0 0.80722 1 40873 40873 2.3027 0 1 16178000 + 26551 28981 17898 18242 31423 31423 0.05518604225744639 KGRPTTAYIY 10 Unmodified _KGRPTTAYIY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.548583984375 3 390.548629 1168.62406 0.21081 8.2333E-05 0.11398 4.4515E-05 0.32479 0.00012685 390.54864975465534 60.932 0.20283 60.889 60.784 60.987 -0.04351 23 9 3 0 0 0 0.66569 1 33250 33250 3.5871 0.26742 1 5215400 26552 6517 17899 18243 31424 31424 0.04649103397377985 KGRQLPRRRRR 11 Unmodified _KGRQLPRRRRR_ 0 0 0 REV__ENSG00000186790|ENST00000335071|FOXE3 REV__ENSG00000186790|ENST00000335071|FOXE3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2169494628906 4 370.489542 1477.92906 0.28316 0.00010491 -0.13833 -5.125E-05 0.14482 5.3656E-05 370.4893093715462 39.134 0.40155 39.134 38.88 39.282 0 29 18 2 0 0 0 0.30605 1 20938 20938 0 0 1 1144600 + 26553 23594 17900 18244 31425 31425 0.2092155710474799 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2989501953125 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 0.046366 1 0.046366 -0.45363 0.54637 0 0 0 0 0.97444 1 23 23 0.69038 0 1 + 26554 21892 17901 18245 31426 31426 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2990112304688 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 0.30775 1 0.30775 -0.19225 0.80775 0 0 0 0 0.97444 1 154 154 0.69038 0 1 + 26555 21892 17901 18245 31427 31427 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2973327636719 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 0.56975 1 0.56975 0.069752 1.0698 0 0 0 0 0.97444 1 277 277 0.69038 0 1 + 26556 21892 17901 18245 31428 31428 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2983703613281 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 1.5344 1 1.5344 1.0344 2.0344 0 0 0 0 0.97444 1 751 751 0.69038 0 1 + 26557 21892 17901 18245 31429 31429 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2983703613281 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 5.8859 1 5.8859 5.3859 6.3859 0 0 0 0 0.97444 1 2827 2827 0.69038 0 1 + 26558 21892 17901 18245 31430 31430 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2990112304688 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 0.43588 1 0.36196 -0.13804 0.86196 -0.07392 0 0 0 0.97444 1 219 219 0.69038 0 1 + 26559 21892 17901 18245 31431 31431 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2990417480469 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 5.9175 1 5.9186 5.4186 6.4186 0.0010915 0 0 0 0.97444 1 2979 2979 0.69038 0 1 + 26560 21892 17901 18245 31432 31432 0.14075262273365752 KGRVVPII 8 Unmodified _KGRVVPII_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.29833984375 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 9.0662 1 9.0837 8.5837 9.5837 0.017581 0 0 0 0.97444 1 4505 4505 0.69038 0 1 + 26561 21892 17901 18245 31433 31433 0.14075262273365752 KGSFKGFKA 9 Unmodified _KGSFKGFKA_ 0 0 0 REV__ENSG00000035928|ENST00000349703|RFC1 REV__ENSG00000035928|ENST00000349703|RFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2807922363281 2 485.279452 968.544351 0.26001 0.00012618 3.9045 0.0018948 4.1645 0.002021 485.27977818836155 45.559 0.24037 45.531 45.401 45.642 -0.028011 21 12 2 0 0 0 0.078314 1 24458 24458 38.176 2.1314 1 7166500 + 26562 17165 17902 18246 31434 31434 0.05882081514039328 KGSFKGFKA 9 Unmodified _KGSFKGFKA_ 0 0 0 REV__ENSG00000035928|ENST00000349703|RFC1 REV__ENSG00000035928|ENST00000349703|RFC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 485.279452 968.544351 0.26001 0.00012618 3.9045 0.0018948 4.1645 0.002021 485.27977818836155 45.559 0.24037 45.531 45.401 45.642 -0.028011 0 0 NaN 38.176 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 7166500 + 26563 17165 17902 18246 0.05882081514039328 KGSSATPKEL 10 Unmodified _KGSSATPKEL_ 0 0 0 REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2828369140625 2 509.282389 1016.55022 0.3557 0.00018115 -0.036343 -1.8509E-05 0.31936 0.00016264 509.28229559528813 49.073 0.30339 49.073 48.932 49.236 0 26 14 2 0 0 0 0.48505 1 27066 27066 17.113 0.1706 1 12961000 + 26564 26599 17903 18247 31435 31435 0.04261135235049096 KGTCSFPVRML 11 Unmodified _KGTCSFPVRML_ 0 0 0 ENST00000599594.1_1_19:41188932-41196472:-|nuORF ENST00000599594.1_1_19:41188932-41196472:-|nuORF ENST00000599594.1_1_19:41188932-41196472:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8843383789062 3 413.550988 1237.63113 -0.52039 -0.00021521 -0.89492 -0.00037009 -1.4153 -0.0005853 413.5505277169003 20.047 0.11644 20.047 19.989 20.106 0 21 12 2 0 0 0 0.7326 1 10066 10066 0.40827 0 1 664660 26565 15790 17904 18248 31436 31436 0.02182376681957976 KGTRAAPPA 9 Unmodified _KGTRAAPPA_ 0 0 0 ENST00000292524.5_1_8:145748060-145748543:+|nuORF ENST00000292524.5_1_8:145748060-145748543:+|nuORF ENST00000292524.5_1_8:145748060-145748543:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.7529296875 2 434.753601 867.49265 NaN NaN NaN NaN NaN NaN NaN 26.836 1 23.799 23.299 24.299 -3.0365 0 0 0 0.29524 1 14826 14826 25.399 1.3787 1 26566 11472 17905 18249 31437 31437 0.0536033782012737 KGVGGAGF 8 Unmodified _KGVGGAGF_ 0 0 0 REV__ENSG00000176490|ENST00000323469|DIRAS1 REV__ENSG00000176490|ENST00000323469|DIRAS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.3070678710938 1 692.372601 691.365324 0.32822 0.00022725 -1.2889 -0.00089237 -0.96064 -0.00066512 692.3722254724031 49.394 0.20221 49.394 49.333 49.536 0 13 8 2 0 0 0 8.7369 1 27217 27217 0 0 1 1482700 + 26567 22934 17906 18250 31438 31438 0.007296169459436896 KGVGGAGF 8 Unmodified _KGVGGAGF_ 0 0 0 REV__ENSG00000176490|ENST00000323469|DIRAS1 REV__ENSG00000176490|ENST00000323469|DIRAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 692.372601 691.365324 0.71152 0.00049264 0.82139 0.00056871 1.5329 0.0010613 692.3730363884813 49.615 0.2546 49.222 49.098 49.353 -0.3923 -0.085699 0.00024858 NaN 0 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2742700 + 26568 22934 17906 18250 0.007296169459436896 KGVPQVLI 8 Unmodified _KGVPQVLI_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6;nc|ENSG00000206384|A6NMZ7-2|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.5537109375 1 853.550565 852.543289 1.4323 0.0012226 0.70077 0.00059814 2.1331 0.0018207 853.5509790223548 108.11 2.1454 101.94 100.83 102.97 -6.1757 571 382 2 0 0 0 0.80676 1 72811 72811 2.5775 0 1 5654400 26569 10397 17907 18251 31439 31439 0.11111867145143606 KGVYQYHERLT 11 Unmodified _KGVYQYHERLT_ 0 0 0 REV__ENSG00000213694|ENST00000358157|S1PR3 REV__ENSG00000213694|ENST00000358157|S1PR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2390441894531 3 465.245609 1392.715 NaN NaN NaN NaN NaN NaN NaN 20.348 1 20.348 19.848 20.848 0 0 0 0 0.88164 1 10232 10232 4.1166 1.4854 1 + 26570 24293 17908 18252 31440 31440 0.03434947374830699 KGYIHSGILL 10 Unmodified _KGYIHSGILL_ 0 0 0 REV__ENSG00000151704|ENST00000392666|KCNJ1 REV__ENSG00000151704|ENST00000392666|KCNJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5415954589844 3 367.553603 1099.63898 1.0697 0.00039317 0.99758 0.00036666 2.0673 0.00075983 367.5536353069051 45.431 0.52304 40.476 40.146 40.669 -4.9549 63 35 3 0 0 0 0.62068 1 27630 27630 5.7834 0.38072 1 19229000 + 26571 21086 17909 18253 31441 31441 0.0931459526539129 KHANKVKR 8 Unmodified _KHANKVKR_ 0 0 0 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;ENST00000510933.1_1_5:176449913-176468889:+|nuORF ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.2816162109375 2 490.809242 979.603932 1.5299 0.0007509 1.471 0.00072196 3.0009 0.0014729 490.8097637818621 106.58 0.21981 100.41 100.29 100.51 -6.1757 68 44 2 0 0 0 8.7369 1 71354 71354 0.69038 0.088878 1 2138800 26572 2999 17910 18254 31442 31442 0.11331397248079611 KHASRNSGAQF 11 Unmodified _KHASRNSGAQF_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3059692382812 2 601.804885 1201.59522 0.61914 0.0003726 0.97174 0.0005848 1.5909 0.0009574 602.3053479874937 95.99 0.724 89.814 89.496 90.22 -6.1757 124 44 4 0 0 0 0.56638 1 63603 63603 13.042 4.4492 1 86011000 26573 7346 17911 18255 31443 31443 0.0024837882092469954 KHCPSTRSL 9 Unmodified _KHCPSTRSL_ 0 0 0 ENST00000561911.5_1_16:89619423-89623498:+|nuORF ENST00000561911.5_1_16:89619423-89623498:+|nuORF ENST00000561911.5_1_16:89619423-89623498:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.767333984375 2 514.768926 1027.5233 0.39181 0.00020169 -0.017352 -8.9321E-06 0.37445 0.00019276 514.7688044981842 88.953 0.36417 88.449 88.25 88.614 -0.50423 36 15 3 0 0 0 0.49272 1 48729 48729 7.9102 2.1497 1 1835400 26574 15335 17912 18256 31444 31444 0.010637481428830142 KHDQDHISF 9 Unmodified _KHDQDHISF_ 0 0 0 REV__nc|ENSG00000125571|Q9NZH6-2|IL37 REV__nc|ENSG00000125571|Q9NZH6-2|IL37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1815185546875 3 376.180717 1125.52032 1.4911 0.00056092 -0.081639 -3.0711E-05 1.4094 0.0005302 376.18072446967733 32.482 0.39991 28.626 28.432 28.832 -3.8562 36 21 2 0 0 0 0.28023 1 18481 18481 12.873 3.1084 1 15521000 + 26575 19501 17913 18257 31445 31445 -0.03741803710295244 KHDQDKRRAM 10 Unmodified _KHDQDKRRAM_ 0 0 0 REV__ENST00000510019.5_1_5:81571920-81572272:-|nuORF REV__ENST00000510019.5_1_5:81571920-81572272:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.8916625976562 3 428.891172 1283.65169 NaN NaN NaN NaN NaN NaN NaN 15.442 1 12.914 12.414 13.414 -2.5273 0 0 0 0.98857 1 7922 7922 1.9064 0.57673 1 + 26576 28136 17914 18258 31446 31446 0.02120683385942357 KHEATREAWE 10 Unmodified _KHEATREAWE_ 0 0 0 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5389709472656 3 419.538793 1255.59455 -0.50599 -0.00021228 0.07745 3.2493E-05 -0.42854 -0.00017979 419.538794313459 25.406 0.43258 25.406 25.221 25.654 0 65 20 4 0 0 0 0.56348 1 12971 12971 7.9454 0 1 11716000 26577 4869 17915 18259 31447 31447 -0.023024606187846075 KHEWLERRNR 10 Unmodified _KHEWLERRNR_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 712.3119506835938 2 712.386908 1422.75926 NaN NaN NaN NaN NaN NaN NaN 68.822 1 68.822 68.322 69.322 0 0 0 0 0.99514 1 38355 38355 1.1933 0 1 26578 1642 17916 18260 31448 31448 0.06479396311669916 KHFKRHKL 8 Unmodified _KHFKRHKL_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3424682617188 2 547.34071 1092.66687 NaN NaN NaN NaN NaN NaN NaN 21.321 1 21.335 20.835 21.835 0.013796 0 0 0 0.97444 1 10912 10912 2.3027 0.24298 1 26579 9370 17917 18261 31449 31449 0.12423963036121677 KHFPRDYRFKW 11 Unmodified _KHFPRDYRFKW_ 0 0 0 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 REV__nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.768798828125 3 527.280877 1578.8208 0.6132 0.00032333 0.36195 0.00019085 0.97514 0.00051417 527.2804539876007 47.576 0.44401 47.538 47.299 47.743 -0.038647 45 20 5 0 0 0 0.30604 1 25650 25650 0.094841 0 1 12845000 + 26580 19612 17918 18262 31450 31450 0.05454328010955578 KHFRSFEKYVF 11 Unmodified _KHFRSFEKYVF_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.932373046875 3 496.597983 1486.77212 0.25392 0.00012609 -0.7133 -0.00035423 -0.45939 -0.00022813 496.59760268901687 38.486 0.30957 38.503 38.336 38.645 0.01704 63 14 6 0 0 0 0.68282 1 20415 20415 5.8681 0.46543 1 207300000 + 26581 17942 17919 18263 31451 31451 0.04820414651203464 KHFWDGKEYD 10 Unmodified _KHFWDGKEYD_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MSMS AL20221201_MKP_PDAC_01 4 662.8033447265625 2 662.801477 1323.5884 NaN NaN NaN NaN NaN NaN NaN 18.602 1 15.981 15.481 16.481 -2.6215 0 0 0 0.99091 1 9809 9809 1.6526 0.17072 1 26582 8482 17920 18264 31452 31452 -0.060449788502864976 KHGTKTVSA 9 Unmodified _KHGTKTVSA_ 0 0 0 ENST00000511906.5_1_5:37379391-37721408:+|nuORF;ENSG00000082068|ENST00000265107|WDR70 ENST00000511906.5_1_5:37379391-37721408:+|nuORF ENST00000511906.5_1_5:37379391-37721408:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 465.2278137207031 2 464.764166 927.513779 0.45496 0.00021145 1.2402 0.00057639 1.6952 0.00078785 464.765194818909 27.286 0.21627 24.249 24.14 24.356 -3.0365 16 10 2 0 0 0 0.18094 1 15073 15073 20.415 2.2796 1 20534000 26583 1337 17921 18265 31453 31453 0.047123031289856954 KHIHEMLI 8 Unmodified _KHIHEMLI_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7872619628906 2 510.786587 1019.55862 -0.45665 -0.00023325 1.2339 0.00063028 0.77728 0.00039703 510.787106439984 33.872 0.2031 33.68 33.541 33.744 -0.19131 12 7 2 0 0 0 8.7369 1 17699 17699 4.3292 2.0265 1 1132800 + 26584 26993 17922 18266 31454 31454 0.04962410670691497 KHIKCVGF 8 Unmodified _KHIKCVGF_ 0 0 0 REV__ENST00000455445.6_1_3:37035370-37038145:+|nuORF REV__ENST00000455445.6_1_3:37035370-37038145:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.263427734375 2 466.262748 930.510943 NaN NaN NaN NaN NaN NaN NaN 5.1997 1 5.1222 4.6222 5.6222 -0.07749 0 0 0 0.97444 1 2567 2567 0.69038 0 1 + 26585 27242 17923 18267 31455 31455 0.04290756470481938 KHILAKNYF 9 Unmodified _KHILAKNYF_ 0 0 0 ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB ENSG00000164675|ENST00000324698|IQUB MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3092651367188 2 567.326934 1132.63931 1.1431 0.00064852 -0.02739 -1.5539E-05 1.1157 0.00063298 567.326876630046 83.691 0.9062 77.515 77.024 77.93 -6.1757 143 47 4 0 0 0 0.43515 1 54874 54874 10.824 3.5347 1 83356000 26586 7226 17924 18268 31456 31456 0.07830014985211164 KHKGIMKM 8 Unmodified _KHKGIMKM_ 0 0 0 REV__nc|ENSG00000077782|P11362-21|FGFR1 REV__nc|ENSG00000077782|P11362-21|FGFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7752685546875 2 486.777708 971.540863 0.53948 0.00026261 0.17064 8.3066E-05 0.71013 0.00034567 486.77538110669764 93.823 0.54947 93.403 93.127 93.677 -0.42044 67 24 4 0 0 0 0.80975 1 51170 51170 0.79363 0 1 1317000 + 26587 17617 17925 18269 31457 31457 0.05395372144175781 KHKLRQQQI 9 Unmodified _KHKLRQQQI_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.57568359375 3 393.575401 1177.70437 1.0665 0.00041977 -0.43192 -0.00016999 0.63462 0.00024977 393.57524984739234 18.876 0.30928 16.255 16.086 16.396 -2.6215 32 20 2 0 0 0 0.4887 1 9905 9905 8.1555 0.54658 1 3924700 26588 306 17926 18270 31458 31458 0.12263009511070777 KHKMPPPQAF 10 Unmodified _KHKMPPPQAF_ 0 0 0 nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2143859863281 3 394.214704 1179.62228 NaN NaN NaN NaN NaN NaN NaN 47.341 1 47.303 46.803 47.803 -0.038643 0 0 0 0.99091 1 25504 25504 0.69767 0.24315 1 26589 3977 17927 18271 31459 31459 0.03965771107777982 KHKPNIYFK 9 Unmodified _KHKPNIYFK_ 0 0 0 ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2286987304688 3 392.229231 1173.66586 NaN NaN NaN NaN NaN NaN NaN 25.069 1 25.052 24.552 25.552 -0.017006 0 0 0 0.81961 1 12828 12828 5.2969 2.6656 1 26590 2587;13769 17928 18272 31460 31460 0.08597703876557716 KHKSRHFQAL 10 Unmodified _KHKSRHFQAL_ 0 0 0 REV__ENST00000328194.7_2_11:9160490-9160769:-|nuORF REV__ENST00000328194.7_2_11:9160490-9160769:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8824157714844 3 417.907151 1250.69962 NaN NaN NaN NaN NaN NaN NaN 27.704 1 27.734 27.234 28.234 0.029427 0 0 0 0.99008 1 14404 14404 1.7423 0 1 + 26591 25578 17929 18273 31461 31461 0.08430125368317931 KHLDHLLN 8 Unmodified _KHLDHLLN_ 0 0 0 nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 MSMS AL20221201_MKP_PDAC_01 4 495.2782897949219 2 495.279983 988.545414 NaN NaN NaN NaN NaN NaN NaN 73.034 1 66.858 66.358 67.358 -6.1757 0 0 0 0.75749 1 47768 47768 25.399 4.5281 1 26592 1261 17930 18274 31462 31462 0.05068295882949769 KHLEKAVQH 9 Unmodified _KHLEKAVQH_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205;ENST00000607647.5_1_7:135285632-135291519:+|nuORF ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.5253601074219 3 363.876969 1088.60908 0.85547 0.00031129 2.3858 0.00086813 3.2413 0.0011794 363.8780192090078 16.62 0.12004 14.063 14.007 14.127 -2.557 25 15 2 0 0 0 0.21185 1 8597 8597 3.8763 2.3944 1 1693300 26593 6396 17931 18275 31463 31463 0.0683165632001419 KHLHLRVK 8 Unmodified _KHLHLRVK_ 0 0 0 nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF;ENST00000478489.5_1_2:242312522-242334860:+|nuORF;ENST00000464142.5_1_2:242312522-242326572:+|nuORF nc|ENSG00000006607|O94887-3|FARP2 nc|ENSG00000006607|O94887-3|FARP2 MSMS AL20221201_MKP_PDAC_01 4 515.835205078125 2 515.83526 1029.65597 NaN NaN NaN NaN NaN NaN NaN 106.85 1 100.68 100.18 101.18 -6.1757 0 0 0 0.97444 1 71505 71505 0.69038 0 1 26594 340 17932 18276 31464 31464 0.14232560661844218 KHLLNPGFIT 10 Unmodified _KHLLNPGFIT_ 0 0 0 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2060546875 3 380.557236 1138.64988 -0.8354 -0.00031792 0.018847 7.1724E-06 -0.81655 -0.00031074 380.5569755824877 30.341 0.18024 30.341 30.222 30.402 0 12 8 2 0 0 0 0.23946 1 15724 15724 3.5871 1.6807 1 1107100 + 26595 17233 17933 18277 31465 31465 0.08609997639655376 KHLRKLAIV 9 Unmodified _KHLRKLAIV_ 0 0 0 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3641357421875 2 539.366393 1076.71823 NaN NaN NaN NaN NaN NaN NaN 105.1 1 105.05 104.55 105.55 -0.048737 0 0 0 0.8622 1 58332 58332 0 0 1 + 26596 18549 17934 18278 31466 31466 0.18294287010144217 KHMIIEHKI 9 Unmodified _KHMIIEHKI_ 0 0 0 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 ENSG00000198839|ENST00000361822|ZNF277 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5600280761719 3 383.558471 1147.65358 NaN NaN NaN NaN NaN NaN NaN 21.748 1 21.761 21.261 22.261 0.013796 0 0 0 0.85447 1 11153 11153 0.96228 0.18574 1 26597 10170 17935 18279 31467 31467 0.0856634414187738 KHMLTYLYPL 10 Unmodified _KHMLTYLYPL_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2;REV__nc|ENSG00000257335|O43451-1|MGAM REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.9016723632812 3 426.902015 1277.68422 0.18327 7.8238E-05 -0.49163 -0.00020988 -0.30836 -0.00013164 426.90193199515886 25.181 0.33835 22.298 22.211 22.549 -2.8831 41 27 2 0 0 0 0.62068 1 13728 13728 5.7834 0.38072 1 8964300 + 26598 24566;24564 17936 18280 31468 31468 0.05648077736236701 KHNCPEWLN 9 Unmodified _KHNCPEWLN_ 0 0 0 REV__ENSG00000036448|ENST00000262113|MYOM2 REV__ENSG00000036448|ENST00000262113|MYOM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.846435546875 3 380.846681 1139.51821 NaN NaN NaN NaN NaN NaN NaN 60.848 1 60.848 60.348 61.348 0 0 0 0 0.84564 1 33934 33934 1.0715 0.29493 1 + 26599 17168 17937 18281 31469 31469 -0.04596555719740536 KHNLRRWE 8 Unmodified _KHNLRRWE_ 0 0 0 ENSG00000129437|ENST00000650543|KLK14;nc|ENSG00000129437|Q9P0G3|KLK14 ENSG00000129437|ENST00000650543|KLK14 ENSG00000129437|ENST00000650543|KLK14 MSMS AL20221201_MKP_PDAC_01 4 380.2140808105469 3 380.212463 1137.61556 NaN NaN NaN NaN NaN NaN NaN 109.32 1 103.15 102.65 103.65 -6.1757 0 0 0 0.97444 1 73016 73016 0.35063 0.081612 1 26600 4134 17938 18282 31470 31470 0.052255942714282355 KHNNRFHPF 9 Unmodified _KHNNRFHPF_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5401306152344 3 399.540579 1195.59991 0.33489 0.0001338 -0.29745 -0.00011884 0.037435 1.4957E-05 399.5403235199614 16.824 0.36932 14.267 13.983 14.353 -2.557 83 57 2 0 0 0 0.54444 1 8672 8672 2.7352 0 1 2786800 + 26601 19148 17939 18283 31471 31471 0.00993307754356465 KHPRLLTF 8 Unmodified _KHPRLLTF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.3080444335938 2 506.308544 1010.60253 0.026646 1.3491E-05 0.40466 0.00020488 0.4313 0.00021837 506.30866266661764 93.09 0.19521 92.632 92.575 92.771 -0.4574 13 9 2 0 0 0 0.80676 1 50846 50846 2.5775 1.7838 1 259110 26602 5210 17940 18284 31472 31472 0.0976576315931652 KHQLLYLNKW 10 Unmodified _KHQLLYLNKW_ 0 0 0 ENST00000433477.3_1_4:156846568-156846796:-|nuORF ENST00000433477.3_1_4:156846568-156846796:-|nuORF ENST00000433477.3_1_4:156846568-156846796:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2425842285156 3 448.25919 1341.75574 0.86287 0.00038679 4.0936 0.001835 4.9564 0.0022218 448.260788009434 47.887 0.12589 47.848 47.743 47.869 -0.038647 6 5 2 0 0 0 0.23993 1 25819 25819 1.7423 0.28716 1 960920 26603 13292 17941 18285 31473 31473 0.09853333485125404 KHRMLRYNYMF 11 Unmodified _KHRMLRYNYMF_ 0 0 0 REV__nc|ENSG00000188785|Q8NEK5|ZNF548 REV__nc|ENSG00000188785|Q8NEK5|ZNF548 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 779.89404296875 2 779.892123 1557.76969 NaN NaN NaN NaN NaN NaN NaN 92.75 1 92.75 92.25 93.25 0 0 0 0 0.94307 1 51285 51285 0.30703 0 1 + 26604 23730 17942 18286 31474 31474 0.01311919650265736 KHRNMSYKSF 10 Unmodified _KHRNMSYKSF_ 0 0 0 REV__ENSG00000172890|ENST00000319023|NADSYN1 REV__ENSG00000172890|ENST00000319023|NADSYN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.3295288085938 2 649.327139 1296.63972 NaN NaN NaN NaN NaN NaN NaN 83.972 1 83.972 83.472 84.472 0 0 0 0 0.99248 1 46562 46562 1.4819 0 1 + 26605 22684 17943 18287 31475 31475 0.0032706664276247466 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4830627441406 4 359.48366 1433.90553 0.045587 1.6388E-05 -1.1842 -0.00042571 -1.1387 -0.00040933 359.4831509954128 37.883 0.46467 37.883 37.604 38.069 0 58 22 3 0 0 0 0.74429 1 20111 20111 0.094841 0 1 3281100 26606 9863 17944 18288 31476 31476 0.20593698547577333 KHRRKQKTPKK 11 Unmodified _KHRRKQKTPKK_ 0 0 0 ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B ENSG00000196700|ENST00000369888|ZNF512B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 359.48366 1433.90553 -0.12152 -4.3685E-05 -1.696 -0.0006097 -1.8176 -0.00065339 359.7337244825329 37.791 0.32942 37.808 37.634 37.963 0.01704 -0.037613 -0.00036884 NaN 0.094841 37 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2850000 26607 9863 17944 18288 0.20593698547577333 KHRSCKMK 8 Unmodified _KHRSCKMK_ 0 0 0 REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3 REV__nc|ENSG00000196104|Q9BQ16-9|SPOCK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2752380371094 2 509.275864 1016.53717 NaN NaN NaN NaN NaN NaN NaN 15.942 1 15.942 15.442 16.442 0 0 0 0 0.97444 1 7728 7728 0.69038 0 1 + 26608 23787 17945 18289 31477 31477 0.029567023703179984 KHSALADL 8 Unmodified _KHSALADL_ 0 0 0 REV__nc|ENSG00000164944|Q69YN4-2|VIRMA REV__nc|ENSG00000164944|Q69YN4-2|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 854.47314453125 1 854.473043 853.465767 1.4273 0.0012196 -0.31111 -0.00026583 1.1162 0.00095377 854.4726255074539 105.33 0.094429 99.157 99.105 99.199 -6.1757 32 24 2 0 0 0 0.80992 1 70565 70565 0.69038 0 1 66423000 + 26609 21964 17946 18290 31478 31478 0.033172292089261646 KHSCAESGHC 10 Unmodified _KHSCAESGHC_ 0 0 0 ENST00000308497.8_1_4:184827389-184827656:+|nuORF ENST00000308497.8_1_4:184827389-184827656:+|nuORF ENST00000308497.8_1_4:184827389-184827656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.4761047363281 3 353.476259 1057.40695 0.47357 0.0001674 -0.3339 -0.00011803 0.13967 4.9369E-05 353.47623671272754 84.633 0.22941 84.133 83.998 84.227 -0.49961 15 10 2 0 0 0 0.72292 1 46328 46328 0.12286 0 1 457760 26610 11654 17947 18291 31479 31479 -0.1194593841933056 KHSNSLYFGL 10 Unmodified _KHSNSLYFGL_ 0 0 0 REV__ENST00000290663.10_1_1:43849960-43850143:-|nuORF REV__ENST00000290663.10_1_1:43849960-43850143:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7704467773438 2 583.303655 1164.59276 1.244 0.00072563 -2.4597 -0.0014348 -1.2157 -0.00070914 583.3021491662221 47.33 0.23437 47.291 47.177 47.411 -0.038643 17 10 2 0 0 0 0.23675 1 25498 25498 7.1017 0.89594 1 2626300 + 26611 25236 17948 18292 31480 31480 0.017045303632812647 KHSWCLKR 8 Unmodified _KHSWCLKR_ 0 0 0 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1;ENST00000380130.6_1_13:32977283-32978487:-|nuORF nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5137023925781 3 353.195644 1056.5651 NaN NaN NaN NaN NaN NaN NaN 86.283 1 85.78 85.28 86.28 -0.50318 0 0 0 0.97444 1 47211 47211 0.35063 0.14377 1 26612 16229 17949 18293 31481 31481 0.039083486220533814 KHTFSLRLT 9 Unmodified _KHTFSLRLT_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2168579101562 3 368.217102 1101.62948 0.25461 9.3751E-05 -0.50334 -0.00018534 -0.24874 -9.1589E-05 368.21682452662355 43.662 0.16687 43.647 43.551 43.718 -0.015667 14 7 2 0 0 0 0.36964 1 23403 23403 9.544 2.4423 1 15902000 26613 4987 17950 18294 31482 31482 0.08272826979828096 KHTFSLRLT 9 Unmodified _KHTFSLRLT_ 0 0 0 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 ENSG00000137877|ENST00000320955|SPTBN5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 368.217102 1101.62948 1.2427 0.00045759 0.67577 0.00024883 1.9185 0.00070642 368.2174243488369 49.056 0.21635 43.66 43.556 43.773 -5.3961 0.0066378 0.00051242 NaN 9.544 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 21196000 26614 4987 17950 18294 0.08272826979828096 KHTYYLTADSP 11 Unmodified _KHTYYLTADSP_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8141479492188 2 648.31696 1294.61937 -0.54438 -0.00035293 -1.3898 -0.00090105 -1.9342 -0.001254 648.8169153284929 29.563 0.19405 29.563 29.508 29.702 0 26 13 3 0 0 0 0.6889 1 15378 15378 5.2969 0.39987 1 4697800 26615 6195 17951 18295 31483 31483 -0.016158255360551266 KIADFGWSV 9 Unmodified _KIADFGWSV_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;ENSG00000087586|ENST00000395915|AURKA nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2694091796875 2 511.768917 1021.52328 -0.11113 -5.6872E-05 -0.6367 -0.00032584 -0.74783 -0.00038271 511.7687415602075 65.957 0.22528 65.473 65.337 65.562 -0.48428 16 9 2 0 0 0 0.085319 1 36009 36009 36.506 19.564 1 3699800 26616 8796 17952 18296 31484 31484 0.013380714145228012 KIADFGWSV 9 Unmodified _KIADFGWSV_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;ENSG00000087586|ENST00000395915|AURKA nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7685241699219 2 511.768917 1021.52328 1.0338 0.00052904 -1.1228 -0.00057461 -0.089044 -4.557E-05 511.7684295352009 65.497 0.258 65.497 65.387 65.645 7.6294E-06 27 11 3 0 0 0 0.023481 1 35890 35890 60.074 25.971 1 11600000 26617 8796 17952 18296 31485 31485 0.013380714145228012 KIADFGWSV 9 Unmodified _KIADFGWSV_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;ENSG00000087586|ENST00000395915|AURKA nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MSMS AL20221201_MKP_PDAC_01 4 511.7686157226562 2 511.768917 1021.52328 NaN NaN NaN NaN NaN NaN NaN 77.897 1 71.722 71.222 72.222 -6.1757 0 0 0 0.20976 1 50967 50967 29.841 3.5724 1 26618 8796 17952 18296 31486 31486 0.013380714145228012 KIADFGWSV 9 Unmodified _KIADFGWSV_ 0 0 0 nc|ENSG00000178999|Q96GD4-4|AURKB;nc|ENSG00000178999|Q96GD4-2|AURKB;ENSG00000178999|ENST00000585124|AURKB;nc|ENSG00000178999|Q96GD4-5|AURKB;nc|ENSG00000105146|Q9UQB9-2|AURKC;nc|ENSG00000105146|Q9UQB9-3|AURKC;ENSG00000105146|ENST00000302804|AURKC;ENSG00000087586|ENST00000395915|AURKA nc|ENSG00000178999|Q96GD4-4|AURKB nc|ENSG00000178999|Q96GD4-4|AURKB MSMS AL20221201_MKP_PDAC_01 4 511.7687683105469 2 511.768917 1021.52328 NaN NaN NaN NaN NaN NaN NaN 79.616 1 73.44 72.94 73.94 -6.1757 0 0 0 0.23566 1 52187 52187 28.495 0.0076673 1 26619 8796 17952 18296 31487 31487 0.013380714145228012 KIAESIPYL 9 Unmodified _KIAESIPYL_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.300537109375 2 517.30005 1032.58555 -0.40897 -0.00021156 0.43557 0.00022532 0.026603 1.3762E-05 517.3002525135695 61.163 0.42651 60.674 60.475 60.901 -0.48932 43 20 3 0 0 0 0.028475 2 33259 33259;33354 56.177 7.7715 1 13249000 26620 10082 17953 18297 31488;31489 31488 0.07055797762859584 KIAESIPYL 9 Unmodified _KIAESIPYL_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3019409179688 2 517.30005 1032.58555 0.5042 0.00026082 1.6142 0.00083501 2.1184 0.0010958 517.300522138923 66.657 0.55683 60.481 60.315 60.872 -6.1757 44 31 2 0 0 0 0.039985 1 43392 43392 49.933 4.2334 1 21596000 26621 10082 17953 18297 31490 31490 0.07055797762859584 KIAKILPD 8 Unmodified _KIAKILPD_ 0 0 0 REV__nc|ENSG00000100628|Q96Q27-1|ASB2 REV__nc|ENSG00000100628|Q96Q27-1|ASB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2926635742188 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.80992 1 72346 72346 0.69038 0 1 16154000 + 26622 18095 17954 18298 31491 31491 0.11708136316622131 KIAPNTPQL 9 Unmodified _KIAPNTPQL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2903747558594 2 491.290017 980.565481 0.61317 0.00030125 -0.050785 -2.495E-05 0.56239 0.0002763 491.2899090006146 36.411 0.21674 36.411 36.29 36.507 0 20 10 3 0 0 0 0.011671 1 19306 19306 75.761 17.082 1 3308400 26623 2113 17955 18299 31492 31492 0.07442046822893644 KIAPNTPQL 9 Unmodified _KIAPNTPQL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2907104492188 2 491.290017 980.565481 -0.23841 -0.00011713 0.55701 0.00027365 0.3186 0.00015652 491.2902367513659 36.635 0.19831 36.385 36.273 36.471 -0.2497 18 8 3 0 0 0 0.012668 1 19239 19239 72.968 23.035 1 4007800 26624 2113 17955 18299 31493 31493 0.07442046822893644 KIAPNTPQL 9 Unmodified _KIAPNTPQL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2906494140625 2 491.290017 980.565481 1.0555 0.00051853 -0.019497 -9.5786E-06 1.036 0.00050896 491.2900983914097 41.63 0.41851 37.022 36.801 37.22 -4.6079 46 27 2 0 0 0 0.0074135 2 25107 24966;25107 110.67 38.752 1 24739000 26625 2113 17955 18299 31494;31495 31495 0.07442046822893644 KICDYLFNV 9 Carbamidomethyl (C) _KIC(Carbamidomethyl (C))DYLFNV_ KIC(1)DYLFNV KIC(66)DYLFNV 0 1 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.29443359375 2 586.294442 1170.57433 1.231 0.00072173 -0.86142 -0.00050505 0.36958 0.00021668 586.2940002970028 88.089 0.76448 81.913 81.457 82.221 -6.1757 104 42 3 0 0 0 0.017075 3 58145 57894;58145;58281 66.457 20.757 1 55912000 26626 6746 17956 18300 31496;31497;31498 31497 666 -0.004133476029437588 KICGKKTA 8 Unmodified _KICGKKTA_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7557678222656 2 424.754756 847.494958 1.5054 0.00063944 1.4404 0.00061183 2.9459 0.0012513 424.7552140273587 33.693 0.49659 29.708 29.469 29.965 -3.9853 66 27 3 0 0 0 0.80992 1 19361 19361 0.69038 0 1 28820000 26627 8264 17957 18301 31499 31499 0.06511050233586957 KIDAVKHYMQF 11 Unmodified _KIDAVKHYMQF_ 0 0 0 ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 ENSG00000183862|ENST00000329903|CNGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2396240234375 3 460.57619 1378.70674 -0.097573 -4.494E-05 -2.7908 -0.0012854 -2.8884 -0.0013303 460.5750395490008 53.517 0.11568 53.454 53.402 53.517 -0.063423 8 5 2 0 0 0 0.72981 1 29061 29061 1.4551 0.12547 1 2544200 26628 9205 17958 18302 31500 31500 0.032536771338527615 KIDCFPGYRGF 11 Unmodified _KIDCFPGYRGF_ 0 0 0 REV__ENSG00000166669|ENST00000562102|ATF7IP2 REV__ENSG00000166669|ENST00000562102|ATF7IP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8825073242188 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 73.559 1 73.603 73.103 74.103 0.043983 0 0 0 0.94165 1 40532 40532 0.45452 0.1855 1 + 26629 22139 17959 18303 31501 31501 -0.01606853963062349 KIDETNYFCW 10 Unmodified _KIDETNYFCW_ 0 0 0 REV__nc|ENSG00000122420|P43088-6|PTGFR REV__nc|ENSG00000122420|P43088-6|PTGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.5328369140625 3 440.197268 1317.56997 0.3903 0.00017181 1.5943 0.0007018 1.9846 0.00087361 440.1982074144402 57.627 0.24342 57.137 57.024 57.267 -0.48974 23 11 3 0 0 0 0.69064 1 31293 31293 1.9064 0.69154 1 4179000 + 26630 19343 17960 18304 31502 31502 -0.0761085681649547 KIDETNYFCW 10 Unmodified _KIDETNYFCW_ 0 0 0 REV__nc|ENSG00000122420|P43088-6|PTGFR REV__nc|ENSG00000122420|P43088-6|PTGFR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 440.197268 1317.56997 0.46372 0.00020413 1.168 0.00051416 1.6317 0.00071829 440.19746774471173 56.941 0.23237 56.941 56.855 57.087 0 -0.098042 -0.00051288 NaN 1.9064 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 421310 + 26631 19343 17960 18304 -0.0761085681649547 KIDETNYFCW 10 Unmodified _KIDETNYFCW_ 0 0 0 REV__nc|ENSG00000122420|P43088-6|PTGFR REV__nc|ENSG00000122420|P43088-6|PTGFR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 440.197268 1317.56997 0.3903 0.00017181 1.5943 0.0007018 1.9846 0.00087361 440.1982074144402 57.627 0.24342 57.137 57.024 57.267 -0.48974 0.098042 5.0047E-05 NaN 1.9064 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4179000 + 26632 19343 17960 18304 -0.0761085681649547 KIDHGIPRI 9 Unmodified _KIDHGIPRI_ 0 0 0 REV__nc|ENSG00000171723|Q9NQX3|GPHN REV__nc|ENSG00000171723|Q9NQX3|GPHN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5478210449219 3 350.213581 1047.61891 -0.4882 -0.00017098 0.5009 0.00017542 0.012691 4.4444E-06 350.2137777043281 26.313 0.24031 26.313 26.208 26.448 0 28 11 3 0 0 0 0.30202 1 13521 13521 16.566 4.3252 1 2424900 + 26633 22594 17961 18305 31503 31503 0.09700844325402613 KIDHGIPRI 9 Unmodified _KIDHGIPRI_ 0 0 0 REV__nc|ENSG00000171723|Q9NQX3|GPHN REV__nc|ENSG00000171723|Q9NQX3|GPHN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 350.213581 1047.61891 -0.4882 -0.00017098 0.5009 0.00017542 0.012691 4.4444E-06 350.2137777043281 26.313 0.24031 26.313 26.208 26.448 0 0 0 NaN 16.566 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2424900 + 26634 22594 17961 18305 0.09700844325402613 KIDKGGKTRK 10 Unmodified _KIDKGGKTRK_ 0 0 0 REV__ENSG00000111863|ENST00000414691|ADTRP REV__ENSG00000111863|ENST00000414691|ADTRP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.2381896972656 3 377.571657 1129.69314 1.1755 0.00044385 0.35828 0.00013528 1.5338 0.00057913 377.5718491113639 78.182 1.294 72.006 70.795 72.089 -6.1757 117 74 2 0 0 0 0.23978 1 50986 50986 1.3296 1.3296 1 42884000 + 26635 18774 17962 18306 31504 31504 0.13348187416954715 KIEDYFPEF 9 Unmodified _KIEDYFPEF_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2859497070312 2 594.284597 1186.55464 0.76921 0.00045713 -0.33749 -0.00020057 0.43172 0.00025656 594.2849410119871 73.813 0.22169 73.337 73.208 73.43 -0.47588 14 10 2 0 0 0 0.38785 1 40421 40421 13.042 2.8591 1 1041500 26636 16063;14003 17963 18307 31505 31505 -0.03117400342057408 KIEELKKET 9 Unmodified _KIEELKKET_ 0 0 0 REV__ENSG00000111860|ENST00000368491|CEP85L REV__ENSG00000111860|ENST00000368491|CEP85L MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2213745117188 3 373.22029 1116.63904 1.6846 0.00062873 1.0132 0.00037814 2.6978 0.0010069 373.2206670766753 20.292 0.46215 17.599 17.4 17.862 -2.693 88 29 4 0 0 0 0.36964 1 10819 10819 9.544 0 1 36007000 + 26637 18773 17964 18308 31506 31506 0.0853855047473644 KIEFREHLWRR 11 Unmodified _KIEFREHLWRR_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS AL20221201_MKP_PDAC_01 4 785.4406127929688 2 785.441683 1568.86881 NaN NaN NaN NaN NaN NaN NaN 44.603 1 39.751 39.251 40.251 -4.852 0 0 0 0.73356 1 27250 27250 15.248 14.898 1 + 26638 21261 17965 18309 31507 31507 0.10713401931002409 KIEFTIISKLL 11 Unmodified _KIEFTIISKLL_ 0 0 0 REV__ENST00000401000.8_1_1:150446088-150446325:+|nuORF REV__ENST00000401000.8_1_1:150446088-150446325:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 652.4119873046875 2 652.913039 1303.81152 1.509 0.00098526 -0.94288 -0.00061562 0.56614 0.00036964 652.9123095658025 105.04 0.10939 98.864 98.773 98.883 -6.1757 12 8 2 0 0 0 0.30538 1 70320 70320 2.4985 0 1 22788000 + 26639 26605 17966 18310 31508 31508 0.17177121882104984 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.37890625 2 575.376958 1148.73936 1.6293 0.00093748 -0.93034 -0.0005353 0.699 0.00040219 575.3768716331915 106.4 1.1421 100.23 99.784 100.93 -6.1757 344 195 3 0 0 0 0.6149 5 70982 70982;71086;71191;71406;71617 0.45834 0 1 9179300 + 26640 19568 17967 18311 31509;31510;31511;31512;31513 31509 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3765258789062 2 575.376958 1148.73936 1.6304 0.00093811 -0.29175 -0.00016787 1.3387 0.00077025 575.3766609790033 107.22 0.25009 101.04 100.96 101.21 -6.1757 68 41 2 0 0 0 0.6149 1 71723 71723 0.45834 0 1 2872000 + 26641 19568 17967 18311 31514 31514 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3777465820312 2 575.376958 1148.73936 1.6308 0.00093831 -1.2065 -0.0006942 0.42426 0.00024411 575.376014300477 107.58 0.36589 101.4 101.15 101.52 -6.1757 91 58 2 0 0 0 0.6149 2 71831 71831;71935 0.45834 0 1 2688200 + 26642 19568 17967 18311 31515;31516 31515 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3779907226562 2 575.376958 1148.73936 1.6305 0.00093817 -1.2533 -0.00072113 0.37721 0.00021704 575.3763022917452 108.5 0.26479 102.32 102.12 102.38 -6.1757 65 47 2 0 0 0 0.6149 1 72474 72474 0.45834 0 1 3049500 + 26643 19568 17967 18311 31517 31517 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8790283203125 2 575.376958 1148.73936 1.6306 0.00093822 -1.137 -0.00065421 0.49361 0.00028401 575.3760760848428 108.68 0.21834 102.51 102.37 102.59 -6.1757 45 32 2 0 0 0 0.6149 1 72593 72593 0.45834 0 1 3364800 + 26644 19568 17967 18311 31518 31518 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3782348632812 2 575.376958 1148.73936 1.6305 0.00093814 -0.61402 -0.00035329 1.0165 0.00058485 575.3763406513332 109.23 0.33449 103.05 102.92 103.25 -6.1757 105 69 2 0 0 0 0.6149 1 72913 72913 0.45834 0 1 2119700 + 26645 19568 17967 18311 31519 31519 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS AL20221201_MKP_PDAC_01 4 575.3767700195312 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 107.74 1 101.56 101.06 102.06 -6.1757 0 0 0 0.85852 1 72042 72042 0.45834 0 1 + 26646 19568 17967 18311 31520 31520 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS AL20221201_MKP_PDAC_01 4 575.3787231445312 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 108.09 1 101.91 101.41 102.41 -6.1757 0 0 0 0.85852 1 72252 72252 0.45834 0 1 + 26647 19568 17967 18311 31521 31521 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS AL20221201_MKP_PDAC_01 4 575.3775024414062 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 108.26 1 102.09 101.59 102.59 -6.1757 0 0 0 0.85852 1 72365 72365 0.45834 0 1 + 26648 19568 17967 18311 31522 31522 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS AL20221201_MKP_PDAC_01 4 575.3767700195312 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 108.81 1 102.63 102.13 103.13 -6.1757 0 0 0 0.85852 1 72702 72702 0.45834 0 1 + 26649 19568 17967 18311 31523 31523 0.17094252319043335 KIELHILKR 9 Unmodified _KIELHILKR_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MSMS AL20221201_MKP_PDAC_01 4 575.3775024414062 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 108.98 1 102.81 102.31 103.31 -6.1757 0 0 0 0.85852 1 72809 72809 0.45834 0 1 + 26650 19568 17967 18311 31524 31524 0.17094252319043335 KIELLFTHL 9 Unmodified _KIELLFTHL_ 0 0 0 REV__ENST00000525980.5_1_9:134025776-134070755:+|nuORF REV__ENST00000525980.5_1_9:134025776-134070755:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8945007324219 3 371.893737 1112.65938 1.6514 0.00061413 -0.32506 -0.00012089 1.3263 0.00049324 371.89372970409045 87.566 0.54669 81.391 81.182 81.729 -6.1757 68 29 3 0 0 0 0.54213 1 57686 57686 4.897 1.9018 1 25685000 + 26651 19566 17968 18312 31525 31525 0.10755765925205196 KIERRWAI 8 Unmodified _KIERRWAI_ 0 0 0 REV__ENST00000513805.5_1_5:87966899-87968817:-|nuORF REV__ENST00000513805.5_1_5:87966899-87968817:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3201904296875 2 536.324725 1070.6349 0.017599 9.4389E-06 2.5195 0.0013513 2.5371 0.0013607 536.3246210094435 37.952 0.25073 37.969 37.859 38.11 0.01704 15 11 2 0 0 0 0.62219 1 20172 20172 24.021 6.9077 1 2488500 + 26652 28183 17969 18313 31526 31526 0.10240550562298267 KIERRWAI 8 Unmodified _KIERRWAI_ 0 0 0 REV__ENST00000513805.5_1_5:87966899-87968817:-|nuORF REV__ENST00000513805.5_1_5:87966899-87968817:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 536.324725 1070.6349 0.61636 0.00033057 5.9628 0.003198 6.5792 0.0035286 536.3276445813331 43.081 0.28651 38.317 38.161 38.448 -4.7648 0.17373 0.0003953 NaN 24.021 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 15955000 + 26653 28183 17969 18313 0.10240550562298267 KIESCMELK 9 Unmodified _KIESCMELK_ 0 0 0 REV__ENSG00000184677|ENST00000375647|ZBTB40 REV__ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 360.8529052734375 3 360.852444 1079.5355 NaN NaN NaN NaN NaN NaN NaN 21.981 1 19.246 18.746 19.746 -2.7348 0 0 0 0.7818 1 11806 11806 4.1895 0.59301 1 + 26654 23436 17970 18314 31527 31527 -0.0010839622898402013 KIFAIPAT 8 Unmodified _KIFAIPAT_ 0 0 0 ENST00000521467.5_1_8:72740403-72875206:+|nuORF ENST00000521467.5_1_8:72740403-72875206:+|nuORF ENST00000521467.5_1_8:72740403-72875206:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 860.5213012695312 1 860.524016 859.516739 -0.367 -0.00031581 -2.2746 -0.0019574 -2.6416 -0.0022732 860.5216291706118 103.25 0.09169 103.2 103.14 103.23 -0.047928 8 3 3 0 0 0 0.80992 1 57338 57338 0.69038 0 1 6202000 26655 14743 17971 18315 31528 31528 0.08136178253789694 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3298950195312 2 581.329339 1160.64412 0.49099 0.00028543 0.18642 0.00010837 0.67741 0.0003938 581.329613496949 67.52 0.40814 67.037 66.78 67.189 -0.48218 46 17 4 0 0 0 0.047829 1 36857 36857 59.368 21.193 1 11922000 26656 4347 17972 18316 31529 31529 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8324584960938 2 581.329339 1160.64412 0.96531 0.00056116 1.3443 0.00078149 2.3096 0.0013427 581.32951362753 89.938 0.99478 83.763 83.345 84.34 -6.1757 146 56 3 0 0 0 0.024351 5 59148 59148;59265;59398;59538;59676 71.708 33.532 1 26271000 26657 4347 17972 18316 31530;31531;31532;31533;31534 31530 0.07022854337333229 KIFDEILVNA 10 Unmodified _KIFDEILVNA_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 581.329339 1160.64412 1.0882 0.00063261 1.2014 0.00069841 2.2896 0.001331 581.3305418088075 67.02 0.20699 67.038 66.895 67.102 0.018028 0.00043683 0.0010486 NaN 59.368 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3884800 26658 4347 17972 18316 0.07022854337333229 KIFEDIPTL 9 Unmodified _KIFEDIPTL_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.30517578125 2 538.305332 1074.59611 -0.098589 -5.3071E-05 -0.64899 -0.00034936 -0.74758 -0.00040243 538.3050955971951 70.079 0.33405 69.6 69.382 69.716 -0.47903 32 18 2 0 0 0 0.0086722 1 38268 38268 88.954 27.596 1 6466800 26659 7019 17973 18317 31535 31535 0.0617978041727838 KIFEDIPTL 9 Unmodified _KIFEDIPTL_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.304931640625 2 538.305332 1074.59611 0.77016 0.00041458 0.12793 6.8863E-05 0.89808 0.00048344 538.305302420151 92.419 0.49863 86.244 85.967 86.466 -6.1757 46 29 2 0 0 0 0.036857 2 61058 61058;61182 51.63 13.656 1 17118000 26660 7019 17973 18317 31536;31537 31536 0.0617978041727838 KIFEDIPTL 9 Unmodified _KIFEDIPTL_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.305332 1074.59611 0.27159 0.0001462 0.024201 1.3028E-05 0.29579 0.00015923 538.3053473601925 69.573 0.24791 69.573 69.444 69.692 0 -0.013669 0.00046077 NaN 88.954 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 719590 26661 7019 17973 18317 0.0617978041727838 KIFEMGPVFTL 11 Oxidation (M) _KIFEM(Oxidation (M))GPVFTL_ KIFEM(1)GPVFTL KIFEM(55)GPVFTL 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.3477783203125 2 649.346674 1296.6788 0.49307 0.00032018 0.56319 0.00036571 1.0563 0.00068588 649.3474572093152 74.893 0.27445 74.939 74.793 75.068 0.045967 39 12 4 0 0 0 0.029924 1 41266 41266 55.249 34.834 1 9460700 26662 10128 17974 18318 31538 31538 1644 0.04232354153759843 KIFEMGPVFTL 11 Oxidation (M) _KIFEM(Oxidation (M))GPVFTL_ KIFEM(1)GPVFTL KIFEM(88)GPVFTL 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.850341796875 2 649.346674 1296.6788 1.0914 0.00070872 0.019197 1.2466E-05 1.1106 0.00072119 649.346738326319 96.136 0.23579 89.96 89.848 90.084 -6.1757 26 14 2 0 0 0 0.00053139 1 63671 63671 88.364 53.962 1 16927000 26663 10128 17974 18318 31539 31539 1644 0.04232354153759843 KIFEMGPVFTL 11 Unmodified _KIFEMGPVFTL_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.3519287109375 2 641.349217 1280.68388 0.15127 9.7015E-05 0.85728 0.00054981 1.0085 0.00064683 641.3501473933475 99.749 0.12051 93.574 93.49 93.611 -6.1757 19 7 3 0 0 0 5.2027E-06 1 66525 66525 94.909 32.336 1 56904000 26664 10128 17974 18319 31540 31540 0.054766580163914114 KIFFLNLF 8 Unmodified _KIFFLNLF_ 0 0 0 ENST00000311127.8_1_3:124688549-124688819:-|nuORF ENST00000311127.8_1_3:124688549-124688819:-|nuORF ENST00000311127.8_1_3:124688549-124688819:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3119506835938 2 521.310221 1040.60589 0.29328 0.00015289 -0.20731 -0.00010807 0.085975 4.482E-05 521.3103597869253 78.493 0.28284 78.546 78.394 78.677 0.052452 27 11 3 0 0 0 0.67481 1 43329 43329 19.439 4.8573 1 4410800 26665 11685 17975 18320 31541 31541 0.08721013213289552 KIFHLIKEFYE 11 Unmodified _KIFHLIKEFYE_ 0 0 0 REV__ENSG00000143643|ENST00000366661|TTC13 REV__ENSG00000143643|ENST00000366661|TTC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.6063537597656 3 489.606255 1465.79694 0.72175 0.00035337 0.080883 3.9601E-05 0.80263 0.00039297 489.60634095751965 48.01 0.39906 47.971 47.743 48.142 -0.038643 53 19 4 0 0 0 0.72311 2 25816 25816;25923 2.084 0.75432 1 15558000 + 26666 20659 17976 18321 31542;31543 31542 0.08267049733967724 KIFRRRRG 8 Unmodified _KIFRRRRG_ 0 0 0 ENSG00000136819|ENST00000372447|C9orf78;ENST00000461349.5_1_9:132593183-132597524:-|nuORF ENSG00000136819|ENST00000372447|C9orf78 ENSG00000136819|ENST00000372447|C9orf78 MSMS AL20221201_MKP_PDAC_01 4 544.8508911132812 2 544.849233 1087.68391 NaN NaN NaN NaN NaN NaN NaN 109.35 1 103.17 102.67 103.67 -6.1757 0 0 0 0.97444 1 73031 73031 0.69038 0 1 26667 4860 17977 18322 31544 31544 0.14357883641923763 KIFRRRRG 8 Unmodified _KIFRRRRG_ 0 0 0 ENSG00000136819|ENST00000372447|C9orf78;ENST00000461349.5_1_9:132593183-132597524:-|nuORF ENSG00000136819|ENST00000372447|C9orf78 ENSG00000136819|ENST00000372447|C9orf78 MSMS AL20221201_MKP_PDAC_01 4 544.8508911132812 2 544.849233 1087.68391 NaN NaN NaN NaN NaN NaN NaN 109.52 1 103.34 102.84 103.84 -6.1757 0 0 0 0.97444 1 73137 73137 0.69038 0 1 26668 4860 17977 18322 31545 31545 0.14357883641923763 KIFTPYFNYMH 11 Unmodified _KIFTPYFNYMH_ 0 0 0 nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF nc|ENSG00000143376|Q96L92-3|SNX27 nc|ENSG00000143376|Q96L92-3|SNX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.5728454589844 3 487.572557 1459.69584 0.059805 2.9159E-05 0.89953 0.00043859 0.95934 0.00046775 487.5730662457344 36.061 0.15619 36.086 36.012 36.168 0.024967 10 6 2 0 0 0 0.74046 1 19112 19112 0.45452 0.046251 1 2539700 26669 5502 17978 18323 31546 31546 -0.015617252404126702 KIFVSKLYFN 10 Unmodified _KIFVSKLYFN_ 0 0 0 REV__ENSG00000178338|ENST00000322434|ZNF354B REV__ENSG00000178338|ENST00000322434|ZNF354B MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2466735839844 3 420.244658 1257.71214 1.1871 0.00049888 2.2736 0.00095547 3.4607 0.0014543 420.24541891441004 18.943 0.24756 16.322 16.259 16.506 -2.6215 31 15 3 0 0 0 0.66287 1 10003 10003 7.0371 0.37724 1 2836500 + 26670 23036 17979 18324 31547 31547 0.09359723987995494 KIGRPVDATF 10 Unmodified _KIGRPVDATF_ 0 0 0 REV__ENST00000398810.6_1_7:50659566-50659797:-|nuORF REV__ENST00000398810.6_1_7:50659566-50659797:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.313720703125 2 552.314023 1102.61349 NaN NaN NaN NaN NaN NaN NaN 94.736 1 94.316 93.816 94.816 -0.42044 0 0 0 0.99091 1 51754 51754 1.6526 0.85899 1 + 26671 26572 17980 18325 31548 31548 0.06629120742945815 KIGSIIFQV 9 Unmodified _KIGSIIFQV_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8108825683594 2 502.810585 1003.60662 0.27567 0.00013861 -0.27977 -0.00014067 -0.0040936 -2.0583E-06 502.8106129523867 69.888 0.64676 69.919 69.707 70.354 0.030914 75 32 5 0 0 0 0.020973 2 38379 38379;38499 62.573 1.3951 1 58262000 26672 8296;16388 17981 18326 31549;31550 31549 0.10495807862389483 KIHRNRYPVC 10 Unmodified _KIHRNRYPVC_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.350341796875 2 643.350948 1284.68734 NaN NaN NaN NaN NaN NaN NaN 101.77 1 101.65 101.15 102.15 -0.11613 0 0 0 0.96981 1 55533 55533 3.9444 0.66309 1 26673 3227 17982 18327 31551 31551 0.05638765633602816 KIIEDKTF 8 Unmodified _KIIEDKTF_ 0 0 0 ENSG00000065548|ENST00000337859|ZC3H15 ENSG00000065548|ENST00000337859|ZC3H15 ENSG00000065548|ENST00000337859|ZC3H15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2833862304688 2 497.2844 992.554247 0.39984 0.00019883 -1.5772 -0.00078431 -1.1773 -0.00058548 497.2836823594362 52.837 0.19166 52.837 52.728 52.92 0 14 8 2 0 0 0 0.7559 1 29260 29260 12.241 2.8575 1 1629000 26674 908 17983 18328 31552 31552 0.05767224728765541 KIIETWKD 8 Unmodified _KIIETWKD_ 0 0 0 ENST00000469344.1_1_2:183943727-183960213:+|nuORF;nc|ENSG00000162999|Q8WTR2-2|DUSP19;ENSG00000162999|ENST00000354221|DUSP19 ENST00000469344.1_1_2:183943727-183960213:+|nuORF ENST00000469344.1_1_2:183943727-183960213:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.789794921875 2 516.78985 1031.56515 0.48085 0.0002485 -0.14912 -7.7062E-05 0.33173 0.00017143 516.789784780669 48.294 0.37301 48.255 48.066 48.439 -0.038643 30 18 2 0 0 0 0.44338 1 26084 26084 40.239 13.971 1 4699000 26675 6939 17984 18329 31553 31553 0.05062627103052364 KIIFVFTTK 9 Unmodified _KIIFVFTTK_ 0 0 0 REV__ENST00000316902.11_1_14:23652558-23652753:-|nuORF REV__ENST00000316902.11_1_14:23652558-23652753:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.2305908203125 3 366.230349 1095.66922 NaN NaN NaN NaN NaN NaN NaN 108.62 1 102.45 101.95 102.95 -6.1757 0 0 0 0.85447 1 72587 72587 0.96228 0 1 + 26676 25474 17985 18330 31554 31554 0.1252095393053878 KIIKEFNL 8 Unmodified _KIIKEFNL_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.310791015625 2 502.810585 1003.60662 0.82009 0.00041235 -1.709 -0.00085932 -0.88894 -0.00044697 502.8103078201341 58.024 0.59237 57.958 57.775 58.368 -0.066036 93 29 6 0 0 0 0.70294 1 31645 31645 16.942 1.0951 1 60283000 + 26677 23661 17986 18331 31555 31555 0.10495807862366746 KIIKIIITV 9 Unmodified _KIIKIIITV_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8758544921875 2 520.875728 1039.7369 0.25539 0.00013303 0.27418 0.00014281 0.52958 0.00027584 520.875871896882 59.367 0.52166 59.314 59.093 59.614 -0.053062 36 26 2 0 0 0 0.0090524 1 32359 32359 85.642 23.069 1 5402900 26678 16412 17987 18332 31556 31556 0.2186240386135978 KIIKIIITV 9 Unmodified _KIIKIIITV_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.8762817382812 2 520.875728 1039.7369 1.3104 0.00068257 -0.44486 -0.00023172 0.86556 0.00045085 520.8754056048629 94.501 0.22247 88.325 88.186 88.409 -6.1757 28 12 3 0 0 0 0.0047067 1 62575 62575 118.07 28.642 1 46692000 26679 16412 17987 18332 31557 31557 0.2186240386135978 KIILPRLIRK 10 Unmodified _KIILPRLIRK_ 0 0 0 ENST00000489468.5_1_2:9616148-9627599:+|nuORF;ENST00000495050.5_1_2:9614726-9624712:+|nuORF;ENSG00000134330|ENST00000497473|IAH1 ENST00000489468.5_1_2:9616148-9627599:+|nuORF ENST00000489468.5_1_2:9616148-9627599:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.4450073242188 2 625.445175 1248.8758 NaN NaN NaN NaN NaN NaN NaN 21.596 1 21.61 21.11 22.11 0.013796 0 0 0 1.0061 1 11069 11069 0 0 1 26680 4596 17988 18333 31558 31558 0.2613136654952086 KIILPRLIRK 10 Unmodified _KIILPRLIRK_ 0 0 0 ENST00000489468.5_1_2:9616148-9627599:+|nuORF;ENST00000495050.5_1_2:9614726-9624712:+|nuORF;ENSG00000134330|ENST00000497473|IAH1 ENST00000489468.5_1_2:9616148-9627599:+|nuORF ENST00000489468.5_1_2:9616148-9627599:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.297607421875 3 417.299209 1248.8758 NaN NaN NaN NaN NaN NaN NaN 105.8 1 99.626 99.126 100.13 -6.1757 0 0 0 1.0061 1 70865 70865 0 0 1 26681 4596 17988 18333 31559 31559 0.2613136654952086 KIITIPAAL 9 Unmodified _KIITIPAAL_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.3157043457031 2 470.315503 938.616454 1.1148 0.00052431 -0.69087 -0.00032493 0.42394 0.00019938 470.3152106189213 94.125 0.18323 87.95 87.862 88.045 -6.1757 21 10 3 0 0 0 0.024882 1 62350 62350 58.679 3.9053 1 7891800 26682 8655 17989 18334 31560 31560 0.14468995867730428 KIITQRMYLRY 11 Unmodified _KIITQRMYLRY_ 0 0 0 REV__ENSG00000136802|ENST00000372600|LRRC8A REV__ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.6191101074219 3 495.61839 1483.83334 0.80167 0.00039732 1.5834 0.00078477 2.3851 0.0011821 495.61935940047255 42.581 0.21849 42.581 42.445 42.663 0 23 10 3 0 0 0 0.65706 1 23055 23055 8.2864 2.7631 1 2988700 + 26683 20181 17990 18335 31561 31561 0.11077603359012755 KIIWPLIIASL 11 Unmodified _KIIWPLIIASL_ 0 0 0 REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9454650878906 3 422.94432 1265.81113 1.5312 0.00064763 -0.56864 -0.0002405 0.96261 0.00040713 422.94431032235593 94.399 0.23296 88.223 88.083 88.315 -6.1757 29 13 3 0 0 0 0.69316 1 62530 62530 2.2527 1.0379 1 13832000 + 26684 27569 17991 18336 31562 31562 0.18885746952901172 KIKNDLNLKK 10 Unmodified _KIKNDLNLKK_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2593383789062 3 405.259079 1212.75541 NaN NaN NaN NaN NaN NaN NaN 95.443 1 95.075 94.575 95.575 -0.36814 0 0 0 1.0061 1 52131 52131 0 0 1 26685 1675 17992 18337 31563 31563 0.157539137652293 KIKSWKKRWFV 11 Unmodified _KIKSWKKRWFV_ 0 0 0 ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;ENST00000526537.2_1_11:118518618-118527530:+|nuORF;ENST00000530994.5_1_11:118515264-118527530:+|nuORF;ENST00000524713.5_1_11:118512334-118527530:+|nuORF ENST00000532517.5_1_11:118498004-118527530:+|nuORF ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.6418151855469 3 502.641634 1504.90307 1.6427 0.00082568 0.11513 5.787E-05 1.7578 0.00088355 502.64157825014735 104.96 0.067924 98.782 98.736 98.803 -6.1757 7 4 2 0 0 0 0.74096 1 70260 70260 0.40827 0.31342 1 9530900 26686 514 17993 18338 31564 31564 0.17081850089903128 KIKYPENFFLL 11 Unmodified _KIKYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.270751953125 3 471.270984 1410.79112 0.0088976 4.1932E-06 1.1335 0.00053417 1.1424 0.00053836 471.2715960527136 77.077 0.38739 77.127 76.933 77.321 0.050102 52 15 4 0 0 0 0.66175 1 42526 42526 7.846 3.1301 1 10263000 26687 10449;8229 17994 18339 31565 31565 0.10215951222266995 KILALIMYI 9 Unmodified _KILALIMYI_ 0 0 0 ENSG00000198601|ENST00000641836|OR2M2 ENSG00000198601|ENST00000641836|OR2M2 ENSG00000198601|ENST00000641836|OR2M2 MSMS AL20221201_MKP_PDAC_01 4 539.34130859375 2 539.340664 1076.66677 NaN NaN NaN NaN NaN NaN NaN 106.87 1 100.69 100.19 101.19 -6.1757 0 0 0 0.85737 1 71516 71516 0.6015 0.076735 1 26688 10111 17995 18340 31566 31566 0.13150782201250877 KILDLETQL 9 Unmodified _KILDLETQL_ 0 0 0 ENST00000488909.1_1_9:131260677-131262531:+|nuORF;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2;ENSG00000136811|ENST00000351030|ODF2 ENST00000488909.1_1_9:131260677-131262531:+|nuORF ENST00000488909.1_1_9:131260677-131262531:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8171997070312 2 536.816064 1071.61758 0.51017 0.00027387 0.89597 0.00048097 1.4061 0.00075484 536.8166907385331 60.913 0.32638 60.913 60.743 61.069 0 37 13 4 0 0 0 0.036857 1 33962 33962 51.63 11.68 1 6858800 26689 4857 17996 18341 31567 31567 0.08463165446005405 KILDYEVTL 9 Unmodified _KILDYEVTL_ 0 0 0 ENST00000506241.1_1_5:55251841-55256299:-|nuORF;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST ENST00000506241.1_1_5:55251841-55256299:-|nuORF ENST00000506241.1_1_5:55251841-55256299:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3109741210938 2 547.310615 1092.60668 0.27871 0.00015254 -2.9386 -0.0016083 -2.6599 -0.0014558 547.3082292642991 63.065 0.44902 63.065 62.846 63.295 0 34 18 3 0 0 0 0.18144 1 35209 35209 24.991 0.97039 1 5645900 26690 4599 17997 18342 31568 31568 0.0640776307170654 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2923583984375 2 486.292225 970.569897 0.38621 0.00018781 -0.49583 -0.00024112 -0.10962 -5.3307E-05 486.29178279438526 52.827 0.46305 52.827 52.636 53.099 0 92 21 5 0 0 0 0.047788 2 29310 29199;29310 45.7 21.679 1 266810000 26691 1485 17998 18343 31569;31570 31570 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.5771484375 1 971.577174 970.569897 0.29596 0.00028755 -0.41576 -0.00040394 -0.11979 -0.00011639 971.5763012318517 52.841 0.26064 52.841 52.678 52.938 0 25 11 3 0 0 0 0.078314 1 29213 29213 38.176 9.094 1 4988400 26692 1485 17998 18343 31571 31571 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 971.577880859375 1 971.577174 970.569897 0.6697 0.00065066 -2.5116 -0.0024402 -1.8419 -0.0017896 971.5763848254933 60.254 0.25087 54.14 53.943 54.194 -6.1147 15 12 2 0 0 0 0.0082353 1 38686 38686 96.111 41.337 1 13585000 26693 1485 17998 18343 31572 31572 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2924499511719 2 486.292225 970.569897 0.97019 0.0004718 -0.39787 -0.00019348 0.57232 0.00027832 486.2917811667922 60.223 0.91565 54.108 53.65 54.565 -6.1147 111 49 4 0 0 0 0.023481 3 38702 38702;38838;38983 60.074 21.036 1 299610000 26694 1485 17998 18343 31573;31574;31575 31573 0.08343511245811897 KILEDVVGV 9 Unmodified _KILEDVVGV_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2926940917969 2 486.292225 970.569897 0.88085 0.00042835 -0.089326 -4.3439E-05 0.79153 0.00038491 486.2920327289605 64.982 1.5788 58.806 57.899 59.478 -6.1757 124 87 2 0 0 0 0.05483 3 42145 41905;42145;42297 43.772 11.467 1 13104000 26695 1485 17998 18343 31576;31577;31578 31577 0.08343511245811897 KILEETLYV 9 Unmodified _KILEETLYV_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.317626953125 2 554.31844 1106.62233 0.44402 0.00024613 -0.21112 -0.00011703 0.2329 0.0001291 554.3180953997638 56.684 0.24374 56.684 56.543 56.786 0 22 10 3 0 0 0 0.12357 1 31498 31498 39.95 23.007 1 3294700 26696 3266 17999 18344 31579 31579 0.07328049588772956 KILLISTLFY 10 Unmodified _KILLISTLFY_ 0 0 0 nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2532348632812 3 404.253042 1209.7373 -0.40271 -0.0001628 1.0069 0.00040704 0.60417 0.00024424 404.2536168642502 37.077 0.66562 37.098 36.836 37.502 0.021545 40 30 3 0 0 0 0.69385 1 19706 19706 3.5871 2.8894 1 7988000 26697 7882 18000 18345 31580 31580 0.14081778790568933 KILLISTLFY 10 Unmodified _KILLISTLFY_ 0 0 0 nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 nc|ENSG00000169550|Q8N387-2|MUC15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9169921875 3 404.253042 1209.7373 NaN NaN NaN NaN NaN NaN NaN 39.727 1 39.732 39.232 40.232 0.0050545 0 0 0 0.99008 1 21166 21166 1.7423 1.334 1 26698 7882 18000 18345 31581 31581 0.14081778790568933 KILLLVLYL 9 Unmodified _KILLLVLYL_ 0 0 0 REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.2532348632812 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 12.29 1 9.8082 9.3082 10.308 -2.482 0 0 0 0.86004 1 6209 6209 0.26902 0 1 + 26699 28571 18001 18346 31582 31582 0.2017528800411128 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.3111877441406 2 492.310418 982.606283 0.36366 0.00017903 -0.18109 -8.9152E-05 0.18257 8.9882E-05 492.31021190175096 57.958 0.33043 57.958 57.772 58.103 0 31 13 3 0 0 0 0.032796 1 32224 32224 53.833 11.738 1 7728500 26700 5535 18002 18347 31583 31583 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.310546875 2 492.310418 982.606283 0.43879 0.00021602 0.17481 8.6059E-05 0.61359 0.00030208 492.31049300362986 58.368 0.36701 57.877 57.723 58.09 -0.49079 56 17 4 0 0 0 0.028475 1 31805 31805 56.177 10.156 1 37447000 26701 5535 18002 18347 31584 31584 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.31201171875 2 492.310418 982.606283 1.0589 0.00052132 0.86903 0.00042783 1.9279 0.00094915 492.3109902695033 58.015 0.23801 57.949 57.834 58.072 -0.066036 26 11 3 0 0 0 0.020973 1 31598 31598 62.573 14.227 1 5612400 26702 5535 18002 18347 31585 31585 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3116149902344 2 492.310418 982.606283 1.2054 0.00059343 1.2134 0.00059737 2.4188 0.0011908 492.31104079382493 64.679 0.53145 58.504 58.221 58.752 -6.1757 68 29 3 0 0 0 0.11784 2 41922 41922;42056 31.268 4.3847 1 67325000 26703 5535 18002 18347 31586;31587 31586 0.11428388142519452 KILPTLEAV 9 Unmodified _KILPTLEAV_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3089904785156 2 492.310418 982.606283 0.24955 0.00012285 -1.5929 -0.00078421 -1.3434 -0.00066135 492.30970926065436 76.993 0.82358 70.818 70.431 71.254 -6.1757 65 45 2 0 0 0 0.11784 1 50356 50356 31.268 7.2478 1 11354000 26704 5535 18002 18347 31588 31588 0.11428388142519452 KILPVMVTL 9 Oxidation (M) _KILPVM(Oxidation (M))VTL_ KILPVM(1)VTL KILPVM(65)VTL 0 0 1 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000540272.1_1_11:60711109-60714230:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3217163085938 2 515.322471 1028.63039 0.42869 0.00022091 -0.63972 -0.00032966 -0.21103 -0.00010875 515.3221004436803 67.589 0.27126 67.607 67.435 67.706 0.018036 24 13 2 0 0 0 0.018301 1 37092 37092 65.235 39.836 1 4190300 26705 2721 18003 18348 31589 31589 472 0.1172190530453463 KILPVMVTL 9 Oxidation (M) _KILPVM(Oxidation (M))VTL_ KILPVM(1)VTL KILPVM(100)VTL 0 0 1 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000540272.1_1_11:60711109-60714230:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3230590820312 2 515.322471 1028.63039 0.53917 0.00027785 1.3207 0.00068061 1.8599 0.00095846 515.3231776775513 68.007 0.27295 68.032 67.815 68.088 0.025146 22 12 2 0 0 0 0.0088174 1 37307 37307 103.75 55.402 1 5117200 26706 2721 18003 18348 31590 31590 472 0.1172190530453463 KILPVMVTL 9 Unmodified _KILPVMVTL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000540272.1_1_11:60711109-60714230:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3251342773438 2 507.325014 1012.63547 1.4358 0.00072843 -1.0817 -0.00054878 0.35411 0.00017965 507.3244851825191 98.2 0.14971 92.025 91.952 92.102 -6.1757 23 9 3 0 0 0 0.028475 1 65106 65106 56.177 18.203 1 65632000 26707 2721 18003 18349 31591 31591 0.1296620916715483 KILQELPSV 9 Unmodified _KILQELPSV_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.8133544921875 2 513.813325 1025.6121 0.95491 0.00049065 -0.22119 -0.00011365 0.73372 0.000377 513.8131797289072 54.6 0.34283 54.6 54.398 54.741 0 30 14 3 0 0 0 0.06294 1 30274 30274 41.84 9.0539 1 2491200 26708 6963 18004 18350 31592 31592 0.10031486654179389 KILQELPSV 9 Unmodified _KILQELPSV_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8143310546875 2 513.813325 1025.6121 0.17891 9.1929E-05 0.49088 0.00025222 0.66979 0.00034415 513.8135358724218 55.081 0.42715 54.603 54.369 54.796 -0.47798 58 20 4 0 0 0 0.0082661 2 29809 29809;29916 92.491 38.659 1 13551000 26709 6963 18004 18350 31593;31594 31593 0.10031486654179389 KILQELPSV 9 Unmodified _KILQELPSV_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8138427734375 2 513.813325 1025.6121 1.0314 0.00052995 0.1003 5.1537E-05 1.1317 0.00058148 513.8133061769125 61.503 0.40974 55.347 55.147 55.557 -6.1563 37 20 2 0 0 0 0.040683 1 39626 39626 49.554 5.696 1 36391000 26710 6963 18004 18350 31595 31595 0.10031486654179389 KILQELPSV 9 Unmodified _KILQELPSV_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.813325 1025.6121 0.95491 0.00049065 -0.22119 -0.00011365 0.73372 0.000377 513.8131797289072 54.6 0.34283 54.6 54.398 54.741 0 -0.042782 -0.00033564 NaN 92.491 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2491200 26711 6963 18004 18350 0.10031486654179389 KILQELPSV 9 Unmodified _KILQELPSV_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.813325 1025.6121 0.541 0.00027797 0.071262 3.6615E-05 0.61226 0.00031459 513.8134223308648 54.792 0.22497 54.725 54.579 54.804 -0.066936 0.082485 -3.5103E-05 NaN 92.491 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1254200 26712 6963 18004 18350 0.10031486654179389 KILQMVGPVI 10 Unmodified _KILQMVGPVI_ 0 0 0 REV__ENSG00000151012|ENST00000280612|SLC7A11 REV__ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5653686523438 3 366.563222 1096.66784 1.1259 0.00041271 0.90902 0.00033321 2.0349 0.00074592 366.5635845453752 27.226 0.29529 24.189 24.004 24.299 -3.0365 22 14 2 0 0 0 0.66569 1 15075 15075 3.5871 0 1 34745000 + 26713 21046 18005 18351 31596 31596 0.12336996570161318 KILRFVIK 8 Unmodified _KILRFVIK_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MSMS AL20221201_MKP_PDAC_01 4 508.85302734375 2 508.852587 1015.69062 NaN NaN NaN NaN NaN NaN NaN 98.784 1 92.608 92.108 93.108 -6.1757 0 0 0 0.57076 1 65583 65583 36.044 0 1 26714 3033;3790 18006 18352 31597 31597 0.18340383749944067 KILSELFTV 9 Unmodified _KILSELFTV_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3174438476562 2 525.3157 1048.61685 0.25357 0.00013321 1.8338 0.00096331 2.0874 0.0010965 525.3168767520613 74.148 0.25101 74.192 74.028 74.279 0.043976 25 10 3 0 0 0 0.10247 1 40849 40849 32.786 2.1491 1 2738700 26715 1607 18007 18353 31598 31598 0.09448370796940253 KILSELFTV 9 Unmodified _KILSELFTV_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3;ENST00000549159.1_1_14:31081376-31085737:+|nuORF ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 525.3157 1048.61685 0.62476 0.00032819 0.61458 0.00032285 1.2393 0.00065104 525.3157464394571 74.672 0.19304 74.196 74.133 74.326 -0.47588 0.0023807 -0.00081554 NaN 32.786 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 369510 26716 1607 18007 18353 0.09448370796940253 KILTKLLEV 9 Unmodified _KILTKLLEV_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8547973632812 2 528.854993 1055.69543 0.17152 9.0707E-05 0.81614 0.00043162 0.98766 0.00052233 528.8550652780433 53.119 0.21674 53.056 52.961 53.177 -0.063423 27 10 3 0 0 0 0.0073703 1 28803 28803 110.79 31.196 1 3923900 26717 680 18008 18354 31599 31599 0.16981223102038712 KILTKLLEV 9 Unmodified _KILTKLLEV_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8556518554688 2 528.854993 1055.69543 1.2036 0.0006365 0.17701 9.3611E-05 1.3806 0.00073012 528.8549686940946 94.129 0.18375 87.954 87.88 88.064 -6.1757 24 10 3 0 0 0 0.0087224 1 62333 62333 107.1 7.3443 1 28085000 26718 680 18008 18354 31600 31600 0.16981223102038712 KILYYITNTY 10 Unmodified _KILYYITNTY_ 0 0 0 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3507080078125 2 646.350271 1290.68599 0.11043 7.1374E-05 0.68149 0.00044048 0.79191 0.00051185 646.3507357774897 66.737 0.79379 66.253 65.88 66.674 -0.48323 125 37 4 0 0 0 0.48505 2 36448 36448;36551 17.113 7.039 1 10328000 + 26719 29721 18009 18355 31601;31602 31601 0.052274100258500766 KILYYITNTY 10 Unmodified _KILYYITNTY_ 0 0 0 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.8522338867188 2 646.350271 1290.68599 0.11043 7.1374E-05 0.68149 0.00044048 0.79191 0.00051185 646.3507357774897 66.737 0.79379 66.253 65.88 66.674 -0.48323 125 37 4 0 0 0 0.22636 1 36551 36551 17.113 3.2068 1 10328000 + 26720 29721 18009 18355 31603 31603 0.052274100258500766 KILYYITNTY 10 Unmodified _KILYYITNTY_ 0 0 0 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3515014648438 2 646.350271 1290.68599 0.75594 0.0004886 0.34717 0.0002244 1.1031 0.000713 646.3504885947259 73.798 0.87736 67.622 67.143 68.02 -6.1757 96 43 3 0 0 0 0.17714 3 48034 48034;48275;48394 36.506 13.77 1 46262000 + 26721 29721 18009 18355 31604;31605;31606 31604 0.052274100258500766 KILYYITNTY 10 Unmodified _KILYYITNTY_ 0 0 0 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 REV__nc|ENSG00000156384|Q86XK3-2|SFR1 MSMS AL20221201_MKP_PDAC_01 4 646.3492431640625 2 646.350271 1290.68599 NaN NaN NaN NaN NaN NaN NaN 74.206 1 68.03 67.53 68.53 -6.1757 0 0 0 0.49971 1 48517 48517 26.268 4.7312 1 + 26722 29721 18009 18355 31607 31607 0.052274100258500766 KIMEEKIQI 9 Unmodified _KIMEEKIQI_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MSMS AL20221201_MKP_PDAC_01 4 377.8865661621094 3 377.886253 1130.63693 NaN NaN NaN NaN NaN NaN NaN 45.229 1 40.274 39.774 40.774 -4.9549 0 0 0 0.45218 1 27728 27728 17.443 2.6044 1 26723 2001 18010 18356 31608 31608 0.07683798465245673 KIMEQSPDM 9 Oxidation (M) _KIMEQSPDM(Oxidation (M))_ KIMEQSPDM(1) KIM(-50)EQSPDM(50) 0 0 1 ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11 ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11 ENSG00000124766|ENST00000244745|SOX4 MSMS AL20221201_MKP_PDAC_01 4 547.7477416992188 2 547.746467 1093.47838 NaN NaN NaN NaN NaN NaN NaN 20.659 1 17.966 17.466 18.466 -2.693 0 0 0 0.074615 1 11013 11013 49.933 15.531 2 26724 3814;8628 18011 18357 31609 31609 671 -0.0646186350534208 KIMEQSPDM 9 Unmodified _KIMEQSPDM_ 0 0 0 ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11 ENSG00000124766|ENST00000244745|SOX4;ENSG00000176887|ENST00000322002|SOX11 ENSG00000124766|ENST00000244745|SOX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.3241577148438 2 539.74901 1077.48347 0.93885 0.00050675 -0.30651 -0.00016544 0.63234 0.00034131 539.7489378200827 32.351 0.23406 28.495 28.401 28.635 -3.8562 22 13 2 0 0 0 0.19994 1 18363 18363 12.241 3.6474 1 6230100 26725 3814;8628 18011 18358 31610 31610 -0.05217559642710512 KINEAIVAV 9 Unmodified _KINEAIVAV_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7920532226562 2 478.792392 955.570232 -0.1928 -9.231E-05 0.48036 0.00022999 0.28756 0.00013768 478.7924609009148 44.717 0.2364 44.717 44.552 44.788 0 24 12 3 0 0 0 0.0086722 1 24312 24312 88.954 32.777 1 16524000 26726 1466 18012 18359 31611 31611 0.09066930965650499 KINHFHSREKF 11 Unmodified _KINHFHSREKF_ 0 0 0 REV__ENSG00000221944|ENST00000408957|TIGD1 REV__ENSG00000221944|ENST00000408957|TIGD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2508544921875 3 481.593232 1441.75787 1.3058 0.00062888 -2.1391 -0.0010302 -0.83326 -0.00040129 481.5926719173764 40.858 0.48055 36.261 36.015 36.495 -4.5968 98 29 4 0 0 0 0.67892 1 24280 24280 6.2344 1.5184 1 126460000 + 26727 24366 18013 18360 31612 31612 0.05465762222911508 KINKKRIAL 9 Unmodified _KINKKRIAL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.9168701171875 3 361.916876 1082.7288 -0.59534 -0.00021546 0.89634 0.0003244 0.301 0.00010894 361.91718187807055 15.64 0.078558 15.64 15.581 15.66 0 25 17 2 0 0 0 0.5029 1 7543 7543 7.609 5.1105 1 643300 26728 5868 18014 18361 31613 31613 0.19074269664588428 KINKKRIAL 9 Unmodified _KINKKRIAL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.9176635742188 3 361.916876 1082.7288 -0.031303 -1.1329E-05 1.3381 0.00048428 1.3068 0.00047295 361.9173984037526 15.597 0.14874 15.603 15.514 15.662 0.0057774 29 12 3 0 0 0 0.34999 1 7763 7763 10.151 5.6217 1 1176600 26729 5868 18014 18361 31614 31614 0.19074269664588428 KINKKRIAL 9 Unmodified _KINKKRIAL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3723754882812 2 542.371675 1082.7288 0.11596 6.2892E-05 -0.13746 -7.4552E-05 -0.021498 -1.166E-05 542.3716954041146 16.789 0.16988 14.232 14.152 14.322 -2.557 45 30 2 0 0 0 0.05447 1 8728 8728 43.858 9.7559 1 3053300 26730 5868 18014 18361 31615 31615 0.19074269664588428 KINKKRIAL 9 Unmodified _KINKKRIAL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.9173278808594 3 361.916876 1082.7288 0.9114 0.00032985 0.34625 0.00012531 1.2576 0.00045516 361.9169958418898 16.797 0.29843 14.24 14.1 14.398 -2.557 166 48 4 0 0 0 0.23158 1 8785 8785 19.362 8.5624 1 85138000 26731 5868 18014 18361 31616 31616 0.19074269664588428 KINMLEQYE 9 Unmodified _KINMLEQYE_ 0 0 0 REV__ENSG00000170454|ENST00000252245|KRT75 REV__ENSG00000170454|ENST00000252245|KRT75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2885131835938 2 584.289356 1166.56416 1.4012 0.00081872 -3.7008 -0.0021623 -2.2996 -0.0013436 584.286889945558 50.523 0.22431 50.469 50.325 50.55 -0.053871 20 10 2 0 0 0 0.34999 1 27325 27325 14.838 2.3067 1 2264700 + + 26732 16833 18015 18362 31617 31617 -0.012459553281814806 KINMNKLNI 9 Unmodified _KINMNKLNI_ 0 0 0 ENST00000471702.2_2_3:132406014-132407530:-|nuORF ENST00000471702.2_2_3:132406014-132407530:-|nuORF ENST00000471702.2_2_3:132406014-132407530:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2138671875 3 363.214593 1086.62195 0.96695 0.00035121 2.809 0.0010203 3.776 0.0013715 363.2145671223101 22.675 0.75051 19.897 19.67 20.421 -2.7784 73 53 3 0 0 0 0.5029 1 12311 12311 4.5289 0.65253 1 7326700 26733 13882 18016 18363 31618 31618 0.08210351387901937 KINSVINRF 9 Unmodified _KINSVINRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8221435546875 2 545.822015 1089.62948 -0.19177 -0.00010467 1.0578 0.00057738 0.86606 0.00047271 545.8226751882928 37.073 0.36415 37.094 36.942 37.306 0.021545 50 16 4 0 0 0 0.0024112 1 19630 19630 129.77 77.504 1 10866000 26734 4592 18017 18364 31619 31619 0.0882482697982141 KINSVINRF 9 Unmodified _KINSVINRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2178039550781 3 364.217102 1089.62948 -0.27007 -9.8366E-05 1.3519 0.00049238 1.0818 0.00039402 364.2176774233738 37.046 0.19016 37.067 36.984 37.174 0.021545 14 8 2 0 0 0 0.10734 1 19673 19673 23.79 8.8326 1 2171200 26735 4592 18017 18364 31620 31620 0.0882482697982141 KIPELLILI 9 Unmodified _KIPELLILI_ 0 0 0 REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1965942382812 3 351.242366 1050.70527 -0.023771 -8.3493E-06 2.9673 0.0010422 2.9435 0.0010339 351.5775767355367 28.93 0.18247 28.96 28.871 29.054 0.030106 16 7 3 0 0 0 0.21874 1 15079 15079 1.1933 1.034 1 3543300 + 26736 29268 18018 18365 31621 31621 0.18194411107424457 KIPELLILI 9 Unmodified _KIPELLILI_ 0 0 0 REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF REV__ENST00000602666.1_1_4:154600985-154601297:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 351.242366 1050.70527 -0.33584 -0.00011796 2.965 0.0010414 2.6292 0.00092348 351.2432595004766 29.212 0.26531 29.212 29.063 29.328 0 0.12571 -8.3025E-07 NaN 1.1933 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2813900 + 26737 29268 18018 18365 0.18194411107424457 KIPERGNMTC 10 Unmodified _KIPERGNMTC_ 0 0 0 ENSG00000174175|ENST00000263686|SELP ENSG00000174175|ENST00000263686|SELP ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5228881835938 3 383.523209 1147.5478 -0.671 -0.00025734 -0.45956 -0.00017625 -1.1306 -0.0004336 383.52323551241403 33.109 0.21486 33.109 33.008 33.223 0 23 10 3 0 0 0 0.65773 1 17336 17336 7.0371 4.7543 1 3300600 26738 8398 18019 18366 31622 31622 -0.020073597659120423 KIPNHHALFL 10 Unmodified _KIPNHHALFL_ 0 0 0 REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|20|2|anti-sense REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|20|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.3441162109375 2 595.345658 1188.67676 -0.17172 -0.00010223 0.24167 0.00014388 0.069949 4.1644E-05 595.3457388785104 70.53 0.33058 70.53 70.356 70.686 0 42 13 4 0 0 0 0.66569 1 39379 39379 6.7232 0.99131 1 5939100 + 26739 29387 18020 18367 31623 31623 0.08997106250808429 KIPTITAVCNL 11 Unmodified _KIPTITAVCNL_ 0 0 0 ENSG00000198963|ENST00000376896|RORB;nc|ENSG00000198963|Q92753|RORB ENSG00000198963|ENST00000376896|RORB ENSG00000198963|ENST00000376896|RORB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.5456237792969 3 391.56177 1171.66348 0.92743 0.00036314 2.9407 0.0011515 3.8681 0.0015146 391.5628668287154 18.177 0.22213 15.555 15.504 15.726 -2.6215 29 18 2 0 0 0 0.29923 1 9594 9594 3.8459 0 1 2323300 26740 10215 18021 18368 31624 31624 0.08451487356569487 KIPVFHNG 8 Unmodified _KIPVFHNG_ 0 0 0 ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7 ENSG00000033867|ENST00000454389|SLC4A7 ENSG00000033867|ENST00000454389|SLC4A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2584838867188 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 36.5 1 36.522 36.022 37.022 0.021545 0 0 0 0.97444 1 19340 19340 2.3027 0.65011 1 26741 604 18022 18369 31625 31625 0.04365525825517125 KIRANAIAI 9 Unmodified _KIRANAIAI_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.3138427734375 2 485.313826 968.613099 0.44796 0.0002174 -1.1057 -0.00053662 -0.65775 -0.00031921 485.3129652460531 102.68 0.3708 102.57 102.38 102.75 -0.10458 29 16 2 0 0 0 0.62242 2 55984 55984;56102 0 0 1 519580 26742 1857 18023 18370 31626;31627 31626 0.12753745813722617 KIRANAIAI 9 Unmodified _KIRANAIAI_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.313826 968.613099 0.26423 0.00012824 -0.80246 -0.00038945 -0.53823 -0.00026121 485.3134414107538 102.58 0.2995 102.58 102.49 102.79 0 0.0036189 0.00015075 NaN 0 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 243250 26743 1857 18023 18370 0.12753745813722617 KIRDVTKCL 9 Carbamidomethyl (C) _KIRDVTKC(Carbamidomethyl (C))L_ KIRDVTKC(1)L KIRDVTKC(41)L 0 1 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2212524414062 3 378.221748 1131.64341 0.95217 0.00036013 -0.92548 -0.00035003 0.026699 1.0098E-05 378.221465692823 27.379 0.35847 24.343 24.161 24.519 -3.0365 43 17 4 0 0 0 0.067618 1 15160 15160 40.725 12.491 1 42913000 26744 9221 18024 18371 31628 31628 861 0.08285736416632972 KIRKKRKFIRI 11 Unmodified _KIRKKRKFIRI_ 0 0 0 REV__ENSG00000130943|ENST00000253255|PKDREJ REV__ENSG00000130943|ENST00000253255|PKDREJ MSMS AL20221201_MKP_PDAC_01 4 496.013427734375 3 496.012062 1485.01436 NaN NaN NaN NaN NaN NaN NaN 45.692 1 40.737 40.237 41.237 -4.9549 0 0 0 0.94337 1 28095 28095 0.094841 0.094841 1 + 26745 19755 18025 18372 31629 31629 0.2912490951785003 KIRKRYLKRRG 11 Unmodified _KIRKRYLKRRG_ 0 0 0 ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1 ENSG00000065600|ENST00000261455|PACC1 ENSG00000065600|ENST00000261455|PACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 737.9866943359375 2 737.483686 1472.95282 1.4826 0.0010934 -0.73508 -0.00054211 0.74748 0.00055125 737.9852917568815 104.23 0.092926 98.053 98.014 98.107 -6.1757 10 4 3 0 0 0 0.7453 1 69828 69828 0 0 1 8161200 26746 910 18026 18373 31630 31630 0.2352597781853092 KIRKRYLKRRG 11 Unmodified _KIRKRYLKRRG_ 0 0 0 ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1 ENSG00000065600|ENST00000261455|PACC1 ENSG00000065600|ENST00000261455|PACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 737.4848022460938 2 737.483686 1472.95282 1.4814 0.0010925 -0.27572 -0.00020334 1.2057 0.00088917 737.4834633734587 104.97 0.15016 98.797 98.705 98.856 -6.1757 19 10 2 0 0 0 0.7453 1 70242 70242 0 0 1 198890000 26747 910 18026 18373 31631 31631 0.2352597781853092 KIRKRYLKRRG 11 Unmodified _KIRKRYLKRRG_ 0 0 0 ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1 ENSG00000065600|ENST00000261455|PACC1 ENSG00000065600|ENST00000261455|PACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.9922790527344 3 491.991549 1472.95282 1.551 0.00076307 -0.68123 -0.00033516 0.86975 0.00042791 491.99097165043935 104.95 0.097198 98.775 98.719 98.816 -6.1757 10 6 2 0 0 0 0.7453 1 70263 70263 0 0 1 22642000 26748 910 18026 18373 31632 31632 0.2352597781853092 KIRKTIMQL 9 Unmodified _KIRKTIMQL_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000592597.1_1_19:1093873-1095344:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5756530761719 3 377.574121 1129.70053 1.4253 0.00053814 -0.15285 -5.7711E-05 1.2724 0.00048043 377.57432324754234 32.5 0.33656 28.644 28.477 28.814 -3.8562 39 17 3 0 0 0 0.44883 1 18508 18508 10.151 3.0488 1 20415000 26749 1712 18027 18374 31633 31633 0.14087203693020456 KIRNFVVVF 9 Unmodified _KIRNFVVVF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5660095214844 3 374.565843 1120.6757 0.28591 0.00010709 0.06182 2.3156E-05 0.34773 0.00013025 374.56581591100127 60.842 0.29286 60.799 60.613 60.906 -0.043507 50 14 4 0 0 0 0.2001 2 33127 33127;33237 16.149 4.6544 1 18690000 26750 3102 18028 18375 31634;31635 31634 0.12018891881939453 KIRNFVVVF 9 Unmodified _KIRNFVVVF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3450927734375 2 561.345126 1120.6757 0.76088 0.00042712 -0.92394 -0.00051865 -0.16306 -9.1535E-05 561.3450125813804 60.799 0.33411 60.756 60.613 60.947 -0.04351 58 16 5 0 0 0 0.095405 1 33131 33131 34.102 10.954 1 26726000 26751 3102 18028 18375 31636 31636 0.12018891881939453 KIRNFVVVF 9 Unmodified _KIRNFVVVF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5665588378906 3 374.565843 1120.6757 1.9064 0.00071407 -0.60267 -0.00022574 1.3037 0.00048832 374.56559955900974 95.613 0.32796 89.437 89.316 89.644 -6.1757 59 20 4 0 0 0 0.087258 2 63288 63288;63406 32.786 6.5175 1 71018000 26752 3102 18028 18375 31637;31638 31637 0.12018891881939453 KIRNFVVVF 9 Unmodified _KIRNFVVVF_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3455810546875 2 561.345126 1120.6757 1.5788 0.00088623 -0.61583 -0.00034569 0.96293 0.00054054 561.3448211620256 95.622 0.32796 89.446 89.316 89.644 -6.1757 60 20 4 0 0 0 0.047196 2 63296 63296;63417 46.021 17.534 1 119500000 26753 3102 18028 18375 31639;31640 31639 0.12018891881939453 KIRPHIATL 9 Unmodified _KIRPHIATL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MSMS AL20221201_MKP_PDAC_01 4 350.2263793945312 3 350.225709 1047.6553 NaN NaN NaN NaN NaN NaN NaN 29.564 1 26.263 25.763 26.763 -3.3016 0 0 0 0.076083 1 16629 16629 49.554 19.714 1 26754 4627 18029 18376 31641 31641 0.13337721222137588 KIRPHITTL 9 Unmodified _KIRPHITTL_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2296752929688 3 360.229231 1077.66586 1.4478 0.00052155 -0.044629 -1.6077E-05 1.4032 0.00050547 360.22893546799406 28.721 0.17554 25.573 25.458 25.633 -3.1482 15 8 2 0 0 0 0.20507 1 16029 16029 22.658 4.285 1 5886700 26755 780 18030 18377 31642 31642 0.13013703876549698 KIRWYRSTKDY 11 Unmodified _KIRWYRSTKDY_ 0 0 0 REV__ENST00000561951.5_1_16:56535647-56545169:-|nuORF REV__ENST00000561951.5_1_16:56535647-56545169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.9394836425781 3 505.940409 1514.7994 -0.13535 -6.8481E-05 -0.31974 -0.00016177 -0.4551 -0.00023025 505.9402370224201 58.376 0.34734 57.885 57.723 58.07 -0.49079 55 16 4 0 0 0 0.73237 1 31689 31689 1.2148 0.70888 1 24876000 + 26756 19479 18031 18378 31643 31643 0.06258898191595108 KIRYCITKL 9 Carbamidomethyl (C) _KIRYC(Carbamidomethyl (C))ITKL_ KIRYC(1)ITKL KIRYC(40)ITKL 0 1 0 ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF;ENST00000490413.1_1_1:113240935-113242190:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MSMS AL20221201_MKP_PDAC_01 4 398.9065246582031 3 398.905759 1193.69545 NaN NaN NaN NaN NaN NaN NaN 36.471 1 32.278 31.778 32.778 -4.1928 0 0 0 0.12101 1 21301 21301 40.239 15.358 1 26757 6383 18032 18379 31644 31644 631 0.10634899830370159 KISENIRNVLW 11 Unmodified _KISENIRNVLW_ 0 0 0 REV__nc|ENSG00000128641|O43795-2|MYO1B REV__nc|ENSG00000128641|O43795-2|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.9285888671875 3 457.929621 1370.76703 0.53563 0.00024528 -2.0468 -0.00093731 -1.5112 -0.00069203 457.9287550442052 39.624 0.24651 39.636 39.489 39.736 0.011456 25 11 3 0 0 0 0.71618 1 21083 21083 1.1098 0 1 1786600 + 26758 19625 18033 18380 31645 31645 0.09648110788589292 KISEVVELL 9 Unmodified _KISEVVELL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3123168945312 2 515.313158 1028.61176 0.42647 0.00021977 -0.27158 -0.00013995 0.15489 7.9819E-05 515.3130212669554 67.495 0.34497 67.495 67.294 67.639 0 39 15 3 0 0 0 0.34134 1 37696 37696 15.248 0.41021 1 6557900 26759 3189 18034 18381 31646 31646 0.098600669343341 KISEVVELL 9 Unmodified _KISEVVELL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3129272460938 2 515.313158 1028.61176 0.55582 0.00028642 0.72876 0.00037554 1.2846 0.00066196 515.3134944351876 67.858 0.28688 67.376 67.189 67.475 -0.48218 32 12 3 0 0 0 0.07087 1 37027 37027 39.95 5.548 1 3603000 26760 3189 18034 18381 31647 31647 0.098600669343341 KISIMHEDW 9 Unmodified _KISIMHEDW_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3091430664062 2 579.784241 1157.55393 0.33018 0.00019143 -1.2936 -0.00075001 -0.96342 -0.00055858 579.7834130594518 59.212 0.25425 58.722 58.644 58.898 -0.49079 14 11 2 0 0 0 0.21052 1 32294 32294 6.7232 1.4925 1 541710 26761 2113 18035 18382 31648 31648 -0.01854518262757665 KISPYYRTKL 10 Unmodified _KISPYYRTKL_ 0 0 0 ENST00000569581.1_1_16:28592390-28600520:+|nuORF;ENSG00000176476|ENST00000317058|SGF29 ENST00000569581.1_1_16:28592390-28600520:+|nuORF ENST00000569581.1_1_16:28592390-28600520:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5841369628906 3 423.583562 1267.72886 1.4164 0.00059996 0.0017921 7.591E-07 1.4182 0.00060072 423.5835290335578 54.395 0.39048 48.529 48.266 48.656 -5.8653 57 23 3 0 0 0 0.23548 1 34393 34393 21.799 10.168 1 47851000 26762 8598 18036 18383 31649 31649 0.10570224873913503 KISQKEIKSF 10 Unmodified _KISQKEIKSF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.357177734375 2 604.355888 1206.69722 2.8498 0.0017223 -0.41798 -0.00025261 2.4318 0.0014697 604.3556241763325 97.151 1.7313 97.144 96.747 98.479 -0.007019 245 64 5 0 0 0 0.72292 2 54004 54004;54338 0.35063 0 1 177410000 26763 6400 18037 18384 31650;31651 31650 0.10214232119960798 KISTAVSKADI 11 Unmodified _KISTAVSKADI_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2221069335938 3 378.223923 1131.64994 1.6919 0.00063992 -0.88137 -0.00033336 0.81054 0.00030657 378.2235571352176 21.56 0.39462 18.825 18.64 19.034 -2.7348 75 31 3 0 0 0 0.51719 1 11464 11464 15.538 0.58129 1 8902200 + 26764 186 18038 18385 31652 31652 0.08937952848987152 KITKEPII 8 Unmodified _KITKEPII_ 0 0 0 ENSG00000086102|ENST00000379540|NFX1 ENSG00000086102|ENST00000379540|NFX1 ENSG00000086102|ENST00000379540|NFX1 MSMS AL20221201_MKP_PDAC_01 4 471.3066711425781 2 471.305136 940.595718 NaN NaN NaN NaN NaN NaN NaN 108.26 1 102.08 101.58 102.58 -6.1757 0 0 0 0.97444 1 72362 72362 0.69038 0 1 26765 1430 18039 18386 31653 31653 0.12304405488100656 KITPARIWL 9 Unmodified _KITPARIWL_ 0 0 0 ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.564208984375 3 366.565843 1096.6757 0.042875 1.5717E-05 -3.1672 -0.001161 -3.1243 -0.0011453 366.5646872801817 19.583 0.099733 19.591 19.529 19.629 0.0078487 10 6 2 0 0 0 0.55373 1 9978 9978 4.1895 2.1035 1 731780 26766 9707 18040 18387 31654 31654 0.13122891881948817 KIVDLLKNL 9 Unmodified _KIVDLLKNL_ 0 0 0 ENST00000556730.1_1_14:95047745-95056676:+|nuORF;ENSG00000188488|ENST00000329597|SERPINA5 ENST00000556730.1_1_14:95047745-95056676:+|nuORF ENST00000556730.1_1_14:95047745-95056676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5659790039062 3 352.56562 1054.67503 1.6245 0.00057275 -0.38675 -0.00013635 1.2378 0.00043639 352.56548767128436 90.059 0.19328 83.883 83.774 83.968 -6.1757 19 10 3 0 0 0 0.0087399 1 59466 59466 88.364 17.435 1 8355200 26767 9662 18041 18388 31655 31655 0.14988052442231492 KIVPELAPLF 10 Unmodified _KIVPELAPLF_ 0 0 0 REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48 REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2331848144531 3 376.23387 1125.67978 NaN NaN NaN NaN NaN NaN NaN 50.502 1 50.451 49.951 50.951 -0.05101 0 0 0 0.98914 1 27310 27310 0.77653 0 1 + 26768 23762 18042 18389 31656 31656 0.1219693658495089 KIWDPVHRV 9 Unmodified _KIWDPVHRV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8884887695312 3 383.889097 1148.64546 -0.23274 -8.9347E-05 -1.3775 -0.00052881 -1.6102 -0.00061816 383.8887336534717 32.103 0.24739 32.133 31.969 32.216 0.029743 18 10 2 0 0 0 0.14859 1 16851 16851 28.234 10.37 1 2183100 26769 4651 18043 18390 31657 31657 0.07708533216737123 KIWDPVHRV 9 Unmodified _KIWDPVHRV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8884582519531 3 383.889097 1148.64546 0.99652 0.00038255 -0.72052 -0.0002766 0.276 0.00010596 383.88875917819166 36.289 0.35112 32.096 31.899 32.25 -4.1928 32 20 2 0 0 0 0.43305 1 21149 21149 10.899 1.1347 1 8888500 26770 4651 18043 18390 31658 31658 0.07708533216737123 KIWDPVHRV 9 Unmodified _KIWDPVHRV_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 383.889097 1148.64546 -0.069653 -2.6739E-05 0.41997 0.00016122 0.35031 0.00013448 383.88955188709264 32.229 0.10534 32.1 32.015 32.12 -0.12915 -0.0098093 0.0014324 NaN 28.234 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 765760 26771 4651 18043 18390 0.07708533216737123 KIWDVSVNSV 10 Unmodified _KIWDVSVNSV_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.313232421875 2 573.811313 1145.60807 2.2011 0.001263 -1.5706 -0.00090124 0.63045 0.00036176 573.8105790288863 62.733 0.41771 56.557 56.362 56.78 -6.1757 32 20 2 0 0 0 0.12064 1 40508 40508 57.249 24.463 1 9901000 26772 1052 18044 18391 31659 31659 0.041093971604595936 KIWERIWSA 9 Unmodified _KIWERIWSA_ 0 0 0 ENST00000532383.5_1_11:10825070-10825157:-|nuORF ENST00000532383.5_1_11:10825070-10825157:-|nuORF ENST00000532383.5_1_11:10825070-10825157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8298950195312 2 594.82984 1187.64513 -0.1025 -6.0972E-05 1.5179 0.00090289 1.4154 0.00084192 594.8308861071245 51.129 0.20283 51.075 50.963 51.166 -0.053871 15 9 2 0 0 0 0.11412 1 27668 27668 33.445 19.83 1 2443000 26773 14928 18045 18392 31660 31660 0.058811134968891565 KIWTLKFSH 9 Unmodified _KIWTLKFSH_ 0 0 0 ENSG00000011198|ENST00000644371|ABHD5 ENSG00000011198|ENST00000644371|ABHD5 ENSG00000011198|ENST00000644371|ABHD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.224609375 3 387.225598 1158.65496 NaN NaN NaN NaN NaN NaN NaN 43.506 1 43.49 42.99 43.99 -0.015667 0 0 0 0.82579 1 23318 23318 4.5289 3.0737 1 26774 437 18046 18393 31661 31661 0.08198301502284266 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7850341796875 2 532.784764 1063.55498 0.27443 0.00014621 -0.50006 -0.00026643 -0.22563 -0.00012021 532.784365269111 35.868 0.35776 35.868 35.674 36.032 0 74 17 6 0 0 0 0.0087873 2 18929 18929;19036 103.35 25.204 1 391510000 26775 3636 18047 18394 31662;31663 31662 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.28564453125 2 532.784764 1063.55498 -0.091627 -4.8818E-05 -0.77154 -0.00041106 -0.86316 -0.00045988 532.7842627301684 35.717 0.19985 35.742 35.645 35.845 0.024971 16 9 2 0 0 0 0.01958 1 18887 18887 63.961 5.2817 1 4134900 26776 3636 18047 18394 31664 31664 0.025740193778119647 KIYEGQVEV 9 Unmodified _KIYEGQVEV_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000454085.2_1_15:28141134-28141371:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7850341796875 2 532.784764 1063.55498 0.71488 0.00038088 -0.14586 -7.771E-05 0.56903 0.00030317 532.7845403064476 41.162 0.49401 36.555 36.244 36.738 -4.6079 121 30 5 0 0 0 0.0094097 2 24644 24510;24644 82.529 23.85 1 993750000 26777 3636 18047 18394 31665;31666 31666 0.025740193778119647 KIYKTKEML 9 Unmodified _KIYKTKEML_ 0 0 0 REV__nc|ENSG00000122779|O15164-2|TRIM24 REV__nc|ENSG00000122779|O15164-2|TRIM24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.2138366699219 3 385.226499 1152.65767 1.1657 0.00044905 -0.68996 -0.00026579 0.47571 0.00018326 385.226138980333 66.206 0.45695 60.03 59.841 60.298 -6.1757 34 25 2 0 0 0 0.19496 1 43062 43062 6.1918 0 1 6155300 + 26778 19359 18048 18395 31667 31667 0.08744388844911555 KIYNRPNRI 9 Unmodified _KIYNRPNRI_ 0 0 0 REV__ENST00000559437.5_1_15:78833263-78834532:+|nuORF REV__ENST00000559437.5_1_15:78833263-78834532:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8998718261719 3 391.899885 1172.67783 0.80757 0.00031649 0.33857 0.00013269 1.1461 0.00044917 391.89997901345583 17.838 0.25649 15.251 15.106 15.362 -2.5866 60 26 3 0 0 0 0.4887 1 9298 9298 8.1555 0 1 7621300 + 26779 28814 18049 18396 31668 31668 0.09839320619744285 KKAAKPSVPK 10 Unmodified _KKAAKPSVPK_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8035278320312 2 527.342584 1052.67061 NaN NaN NaN NaN NaN NaN NaN 102.01 1 101.96 101.46 102.46 -0.045853 0 0 0 1.0024 1 56664 56664 0.40072 0.050084 1 26780 9297 18050 18397 31669 31669 0.1463858801932929 KKADKILILH 10 Unmodified _KKADKILILH_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS AL20221201_MKP_PDAC_01 4 589.8859252929688 2 589.884616 1177.75468 NaN NaN NaN NaN NaN NaN NaN 105.77 1 99.599 99.099 100.1 -6.1757 0 0 0 1.0029 1 70849 70849 0.35063 0 1 26781 257 18051 18398 31670 31670 0.17291119116225673 KKAGRPLC 8 Unmodified _KKAGRPLC_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7600402832031 2 436.760372 871.506192 -0.10735 -4.6885E-05 -1.3859 -0.00060532 -1.4933 -0.00065221 436.7595815523448 69.55 0.32233 69.071 68.9 69.223 -0.47903 30 13 3 0 0 0 0.80676 1 38008 38008 2.5775 0 1 1656400 26782 8365 18052 18399 31671 31671 0.06529872327701014 KKAGRSAS 8 Unmodified _KKAGRSAS_ 0 0 0 ENST00000479637.1_1_7:154664335-154668756:+|nuORF ENST00000479637.1_1_7:154664335-154668756:+|nuORF ENST00000479637.1_1_7:154664335-154668756:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.737060546875 2 402.737951 803.46135 -0.32904 -0.00013252 -1.5345 -0.00061802 -1.8636 -0.00075054 402.73742711977985 35.197 0.27686 34.974 34.83 35.107 -0.2224 18 12 2 0 0 0 0.80992 1 18439 18439 0.69038 0 1 1010100 26783 14042 18053 18400 31672 31672 0.05175764786031323 KKAGRSAS 8 Unmodified _KKAGRSAS_ 0 0 0 ENST00000479637.1_1_7:154664335-154668756:+|nuORF ENST00000479637.1_1_7:154664335-154668756:+|nuORF ENST00000479637.1_1_7:154664335-154668756:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 402.737951 803.46135 -0.56881 -0.00022908 -2.0775 -0.00083671 -2.6464 -0.0010658 402.73725674620727 35.05 0.24826 35.05 34.919 35.167 0 0.037611 -0.00024592 NaN 0.69038 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2896700 26784 14042 18053 18400 0.05175764786031323 KKAKSKKTFK 10 Unmodified _KKAKSKKTFK_ 0 0 0 ENST00000487440.5_1_3:47281337-47324087:-|nuORF;nc|ENSG00000088727|Q9HAQ2-2|KIF9;ENSG00000088727|ENST00000684063|KIF9 ENST00000487440.5_1_3:47281337-47324087:-|nuORF ENST00000487440.5_1_3:47281337-47324087:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.390869140625 2 597.390065 1192.76558 1.08 0.00064521 -0.151 -9.0207E-05 0.92905 0.000555 597.3899434021429 106.07 1.4159 99.897 99.603 101.02 -6.1757 500 236 3 0 0 0 0.71276 2 71431 71431;71543 1.4819 1.4819 1 14298000 26785 1493 18054 18401 31673;31674 31673 0.17690521490499123 KKARVIQIIP 10 Unmodified _KKARVIQIIP_ 0 0 0 ENSG00000132334|ENST00000254667|PTPRE;ENST00000463727.1_1_10:129868414-129869560:+|nuORF;nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE ENSG00000132334|ENST00000254667|PTPRE ENSG00000132334|ENST00000254667|PTPRE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.39404296875 2 583.392608 1164.77066 -0.1772 -0.00010338 0.67233 0.00039223 0.49513 0.00028886 583.393411049077 105.08 0.03923 105.03 105.01 105.05 -0.048737 13 7 3 0 0 0 0.72247 1 58323 58323 0.40072 0 1 3652900 26786 4394 18055 18402 31675 31675 0.19486825353146742 KKCIQDFKKI 10 Unmodified _KKCIQDFKKI_ 0 0 0 ENSG00000183783|ENST00000360029|KCTD8 ENSG00000183783|ENST00000360029|KCTD8 ENSG00000183783|ENST00000360029|KCTD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.9143371582031 3 417.581164 1249.72166 0.44163 0.00018442 -2.3625 -0.00098655 -1.9209 -0.00080214 417.5800545183006 93.371 0.094803 87.196 87.139 87.233 -6.1757 10 6 2 0 0 0 0.39689 1 61785 61785 21.799 3.9363 1 11310000 26787 9197 18056 18403 31676 31676 0.10679169001855371 KKCWPVFERYE 11 Unmodified _KKCWPVFERYE_ 0 0 0 REV__ENST00000550071.1_1_12:56661074-56663089:+|nuORF REV__ENST00000550071.1_1_12:56661074-56663089:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.5815124511719 3 495.583345 1483.72821 NaN NaN NaN NaN NaN NaN NaN 17.46 1 17.474 16.974 17.974 0.013865 0 0 0 0.94293 1 8682 8682 0.40827 0.078994 1 + 26788 20070 18057 18404 31677 31677 0.00569062162571754 KKDIRVWH 8 Unmodified _KKDIRVWH_ 0 0 0 nc|ENSG00000166596|Q8N1V2-3|CFAP52;ENSG00000166596|ENST00000352665|CFAP52;nc|ENSG00000166596|Q8N1V2-2|CFAP52;ENST00000576630.5_1_17:9487588-9546512:+|nuORF nc|ENSG00000166596|Q8N1V2-3|CFAP52 nc|ENSG00000166596|Q8N1V2-3|CFAP52 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2263488769531 3 361.213692 1080.61925 0.083759 3.0255E-05 -3.3134 -0.0011968 -3.2296 -0.0011666 361.21223574550186 28.356 0.28369 28.386 28.236 28.52 0.029564 16 11 2 0 0 0 8.7369 1 14784 14784 1.6526 0.17072 1 1632400 26789 7514 18058 18405 31678 31678 0.08216264045267963 KKDLKKLVL 9 Unmodified _KKDLKKLVL_ 0 0 0 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2539367675781 3 362.253265 1083.73797 NaN NaN NaN NaN NaN NaN NaN 97.123 1 96.88 96.38 97.38 -0.24277 0 0 0 0.86004 1 53037 53037 0.26902 0.1097 1 26790 2195 18059 18406 31679 31679 0.19944618230260858 KKDNLLLML 9 Unmodified _KKDNLLLML_ 0 0 0 REV__ENST00000527833.5_1_15:101815530-101816760:-|nuORF REV__ENST00000527833.5_1_15:101815530-101816760:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3309326171875 2 544.330827 1086.6471 1.1919 0.0006488 -1.2417 -0.0006759 -0.049773 -2.7093E-05 544.3301049174427 96.742 0.39998 90.567 90.387 90.787 -6.1757 49 23 3 0 0 0 0.14 1 64158 64158 29.082 0 1 37852000 + 26791 28400 18060 18407 31680 31680 0.10724406190502123 KKDPHIKVS 9 Unmodified _KKDPHIKVS_ 0 0 0 nc|ENSG00000122870|Q9H694-2|BICC1;ENSG00000122870|ENST00000373886|BICC1 nc|ENSG00000122870|Q9H694-2|BICC1 nc|ENSG00000122870|Q9H694-2|BICC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1329040527344 3 351.213469 1050.61858 NaN NaN NaN NaN NaN NaN NaN 102.39 1 102.35 101.85 102.85 -0.045853 0 0 0 0.83049 1 56876 56876 2.2828 0 1 26792 3665 18061 18408 31681 31681 0.09529424605557324 KKDRKKKKF 9 Unmodified _KKDRKKKKF_ 0 0 0 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.9957275390625 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 91.628 1 91.147 90.647 91.647 -0.48092 0 0 0 0.85737 1 50083 50083 0.6015 0.076735 1 26793 5053 18062 18409 31682 31682 0.182613435846406 KKEKRTRIPY 10 Unmodified _KKEKRTRIPY_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2708740234375 3 440.269978 1317.7881 0.39206 0.00017261 0.53415 0.00023517 0.92621 0.00040778 440.2703466606278 45.696 0.19648 45.668 45.549 45.745 -0.028015 16 9 2 0 0 0 0.70734 1 24545 24545 2.086 0.63089 1 3938500 26794 2695 18063 18410 31683 31683 0.14192120888128557 KKEMPHKFVI 10 Unmodified _KKEMPHKFVI_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5779113769531 3 419.577643 1255.7111 0.482 0.00020224 0.89778 0.00037669 1.3798 0.00057893 419.57793413839573 15.199 0.14989 12.672 12.605 12.754 -2.5273 29 21 2 0 0 0 0.5802 1 7769 7769 12.175 0.54338 1 3760700 26795 5335 18064 18411 31684 31684 0.09347186347417846 KKERTLSFN 9 Unmodified _KKERTLSFN_ 0 0 0 ENST00000393328.6_1_17:47677280-47677397:-|nuORF ENST00000393328.6_1_17:47677280-47677397:-|nuORF ENST00000393328.6_1_17:47677280-47677397:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.0845947265625 2 561.81693 1121.61931 1.431 0.00080396 -2.3249 -0.0013061 -0.89385 -0.00050218 561.8155880472426 41.061 0.32138 36.453 36.244 36.566 -4.6079 25 19 2 0 0 0 0.18735 1 24613 24613 19.257 0 1 8077300 26796 12704 18065 18412 31685 31685 0.06336219254626485 KKEVYSSDTY 10 Unmodified _KKEVYSSDTY_ 0 0 0 REV__ENSG00000134201|ENST00000256593|GSTM5 REV__ENSG00000134201|ENST00000256593|GSTM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5349731445312 3 407.199554 1218.57683 0.55806 0.00022724 0.59905 0.00024393 1.1571 0.00047117 407.20002215132627 57.71 0.37709 57.644 57.438 57.815 -0.066036 64 18 5 0 0 0 0.69377 1 31359 31359 1.7423 0.41263 1 32234000 + 26797 19959 18066 18413 31686 31686 -0.023712206642812816 KKFIKGTA 8 Unmodified _KKFIKGTA_ 0 0 0 ENSG00000133116|ENST00000380099|KL;nc|ENSG00000133116|Q9UEF7-2|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MSMS AL20221201_MKP_PDAC_01 4 446.7841491699219 2 446.78437 891.554188 NaN NaN NaN NaN NaN NaN NaN 107.69 1 101.52 101.02 102.02 -6.1757 0 0 0 0.97444 1 72011 72011 0.69038 0.69038 1 26798 4491 18067 18414 31687 31687 0.1040726951941906 KKFIKGTA 8 Unmodified _KKFIKGTA_ 0 0 0 ENSG00000133116|ENST00000380099|KL;nc|ENSG00000133116|Q9UEF7-2|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MSMS AL20221201_MKP_PDAC_01 4 446.7843017578125 2 446.78437 891.554188 NaN NaN NaN NaN NaN NaN NaN 108.58 1 102.41 101.91 102.91 -6.1757 0 0 0 0.97444 1 72566 72566 0.69038 0.69038 1 26799 4491 18067 18414 31688 31688 0.1040726951941906 KKFPPGHVIV 10 Unmodified _KKFPPGHVIV_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5665893554688 3 374.565843 1120.6757 0.82427 0.00030874 1.0861 0.00040682 1.9104 0.00071557 374.5662127903873 65.928 0.63943 65.938 65.44 66.08 0.0095596 60 31 2 0 0 0 0.69064 1 36035 36035 1.9064 0.83491 1 14455000 26800 8605 18068 18415 31689 31689 0.12018891881939453 KKFYPEYE 8 Unmodified _KKFYPEYE_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5 REV__ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5194396972656 3 368.518447 1102.53351 -0.60548 -0.00022313 1.3004 0.00047921 0.69489 0.00025608 368.5189824712088 14.856 0.13206 14.856 14.786 14.918 0 64 36 2 0 0 0 0.80992 1 7065 7065 0.40072 0 1 1824500 + 26801 24048 18069 18416 31690 31690 -0.013653656509177381 KKGKQTDDEIY 11 Unmodified _KKGKQTDDEIY_ 0 0 0 REV__ENSG00000147894|ENST00000380003|C9orf72 REV__ENSG00000147894|ENST00000380003|C9orf72 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2301635742188 3 442.229625 1323.66705 0.28794 0.00012734 1.5228 0.00067343 1.8107 0.00080076 442.2300146368668 100.28 0.10459 100.12 100.06 100.16 -0.1575 7 3 3 0 0 0 0.30604 1 54755 54755 0.08335 0.08335 1 1593700 + 26802 20919 18070 18417 31691 31691 0.018158286641209997 KKGMEVLFVFI 11 Unmodified _KKGMEVLFVFI_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8|AGBL3 REV__nc|ENSG00000146856|Q8NEM8|AGBL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2337036132812 3 437.589548 1309.74682 0.9519 0.00041654 0.25113 0.00010989 1.203 0.00052643 437.58966654275235 47.463 0.28173 47.424 47.216 47.498 -0.038643 21 12 2 0 0 0 0.30584 1 25522 25522 0.45452 0 1 1037900 + 26803 29688 18071 18418 31692 31692 0.10433223804443514 KKGNRGGG 8 Unmodified _KKGNRGGG_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2218017578125 2 387.222469 772.430384 -0.67297 -0.00026059 -0.85883 -0.00033256 -1.5318 -0.00059314 387.22207847210075 106.2 0.33156 106.15 106.02 106.35 -0.048103 18 11 2 0 0 0 0.80992 1 58868 58868 0.69038 0 1 2830000 26804 2166 18072 18419 31693 31693 0.035066114718119934 KKGRKKKKKVS 11 Unmodified _KKGRKKKKKVS_ 0 0 0 REV__ENSG00000055044|ENST00000264279|NOP58 REV__ENSG00000055044|ENST00000264279|NOP58 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.9573364257812 2 657.956438 1313.89832 NaN NaN NaN NaN NaN NaN NaN 14.953 1 14.959 14.459 15.459 0.0057774 0 0 0 0.94307 1 7434 7434 0.30703 0.30703 1 + 26805 17284 18073 18420 31694 31694 0.253929659471396 KKGVKHLSALL 11 Unmodified _KKGVKHLSALL_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3890991210938 2 597.390065 1192.76558 1.0832 0.00064711 -1.3363 -0.00079829 -0.25307 -0.00015118 597.8908689699583 107.57 0.11209 101.39 101.37 101.48 -6.1757 23 17 2 0 0 0 0.74203 1 71982 71982 0.30703 0.30703 1 1782300 26806 2306 18074 18421 31695 31695 0.17690521490499123 KKHAGKGG 8 Unmodified _KKHAGKGG_ 0 0 0 nc|ENSG00000188517|Q9BXS0-3|COL25A1;nc|ENSG00000188517|Q9BXS0-2|COL25A1;ENSG00000188517|ENST00000399132|COL25A1 nc|ENSG00000188517|Q9BXS0-3|COL25A1 nc|ENSG00000188517|Q9BXS0-3|COL25A1 MSMS AL20221201_MKP_PDAC_01 4 391.7365417480469 2 391.735212 781.455871 NaN NaN NaN NaN NaN NaN NaN 30.552 1 27.055 26.555 27.555 -3.497 0 0 0 0.97444 1 17258 17258 0 0 1 26807 9664 18075 18422 31696 31696 0.05640085994241417 KKHHHHHHQQ 10 Unmodified _KKHHHHHHQQ_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.59130859375 2 677.342835 1352.67112 NaN NaN NaN NaN NaN NaN NaN 73.733 1 73.257 72.757 73.757 -0.47588 0 0 0 0.97592 1 40352 40352 3.2813 0.78282 1 26808 5378 18076 18423 31697 31697 0.008888205117500547 KKHKNGKG 8 Unmodified _KKHKNGKG_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 897.046875 1 896.54246 895.535184 0.054353 4.873E-05 2.2902 0.0020533 2.3445 0.002102 896.5445015571474 97.187 0.19901 97.187 96.995 97.194 0 10 8 2 0 0 0 8.7369 1 53631 53631 0.69038 0 1 1082800 + 26809 19336 18077 18424 31698 31698 0.08323732948383622 KKHRKQETKL 10 Unmodified _KKHRKQETKL_ 0 0 0 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3965454101562 2 648.398953 1294.78335 NaN NaN NaN NaN NaN NaN NaN 102.95 1 102.9 102.4 103.4 -0.047928 0 0 0 1.0024 1 57176 57176 0.40072 0.050084 1 26810 2999 18078 18425 31699 31699 0.14775236745367692 KKHVLVAHF 9 Unmodified _KKHVLVAHF_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2224426269531 3 360.222188 1077.64473 -0.13192 -4.7519E-05 0.51747 0.0001864 0.38556 0.00013889 360.22240398767354 37.755 0.39042 37.772 37.552 37.942 0.01704 56 18 4 0 0 0 0.42049 1 20090 20090 11.495 0 1 30783000 26811 1975 18079 18426 31700 31700 0.109017385676907 KKIFKMNKWFF 11 Unmodified _KKIFKMNKWFF_ 0 0 0 REV__ENSG00000105398|ENST00000222002|SULT2A1 REV__ENSG00000105398|ENST00000222002|SULT2A1 MSMS AL20221201_MKP_PDAC_01 4 759.1826171875 2 758.9285 1515.84245 NaN NaN NaN NaN NaN NaN NaN 61.254 1 55.106 54.606 55.606 -6.1478 0 0 0 0.94165 1 39443 39443 1.3295 0.36726 1 + 26812 18423 18080 18427 31701 31701 0.1051599671529857 KKIHRRVLK 9 Unmodified _KKIHRRVLK_ 0 0 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000567229.5_1_15:66791747-66793486:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2723083496094 3 393.271653 1176.79313 NaN NaN NaN NaN NaN NaN NaN 20.066 1 20.074 19.574 20.574 0.0078487 0 0 0 0.84564 1 10225 10225 1.0715 0.3738 1 26813 8421 18081 18428 31702 31702 0.21180469541377533 KKIKAKHRE 9 Unmodified _KKIKAKHRE_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MSMS AL20221201_MKP_PDAC_01 4 569.3619384765625 2 569.364382 1136.71421 NaN NaN NaN NaN NaN NaN NaN 104.91 1 98.738 98.238 99.238 -6.1757 0 0 0 0.85029 1 70228 70228 1.4819 0.95714 1 26814 8732 18082 18429 31703 31703 0.151321975164592 KKILRRRRKIK 11 Unmodified _KKILRRRRKIK_ 0 0 0 ENST00000320876.10_2_18:2688638-2694582:+|nuORF ENST00000320876.10_2_18:2688638-2694582:+|nuORF ENST00000320876.10_2_18:2688638-2694582:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 748.03271484375 2 748.030803 1494.04705 NaN NaN NaN NaN NaN NaN NaN 17.054 1 17.059 16.559 17.559 0.0050564 0 0 0 0.9435 1 8584 8584 0 0 1 26815 11767 18083 18430 31704 31704 0.3197911664071853 KKIMKKRKFC 10 Unmodified _KKIMKKRKFC_ 0 0 0 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 ENSG00000206536|ENST00000383695|OR5K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.6051025390625 3 437.270156 1308.78864 0.31913 0.00013955 -0.015287 -6.6847E-06 0.30384 0.00013286 437.27014229457325 19.605 0.24931 19.612 19.529 19.779 0.0078487 41 13 4 0 0 0 0.72607 1 10057 10057 0 0 1 6456400 26816 10402 18084 18431 31705 31705 0.14659501011965403 KKIVHFQLSI 10 Unmodified _KKIVHFQLSI_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8755493164062 2 606.876791 1211.73903 NaN NaN NaN NaN NaN NaN NaN 17.868 1 17.873 17.373 18.373 0.0050564 0 0 0 1.0029 1 9032 9032 0.35063 0 1 26817 7420 18085 18432 31706 31706 0.14162832599186004 KKIVVALKKRH 11 Unmodified _KKIVVALKKRH_ 0 0 0 ENST00000496620.1_1_3:108044932-108045585:-|nuORF ENST00000496620.1_1_3:108044932-108045585:-|nuORF ENST00000496620.1_1_3:108044932-108045585:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.4534912109375 2 660.453531 1318.89251 1.2745 0.00084177 -1.7149 -0.0011326 -0.44037 -0.00029084 660.4522767859651 105.57 0.30456 99.392 99.313 99.618 -6.1757 33 24 2 0 0 0 0.74203 1 70753 70753 0.30703 0.30703 1 9358200 26818 14376 18086 18433 31707 31707 0.24581867435472304 KKKEEFNP 8 Unmodified _KKKEEFNP_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1020.553527832031 1 1019.55202 1018.54475 0.54032 0.00055088 -0.15935 -0.00016247 0.38096 0.00038841 1020.5536984369597 43.912 0.12058 43.897 43.845 43.966 -0.015667 9 6 2 0 0 0 0.80676 1 23544 23544 2.5775 0 1 101410000 + 26819 19778 18087 18434 31708 31708 0.03621456443238458 KKKELKKLE 9 Unmodified _KKKELKKLE_ 0 0 0 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3765258789062 2 572.376623 1142.73869 1.6651 0.00095304 -0.15395 -8.8115E-05 1.5111 0.00086492 572.3763938809653 103.77 0.15427 97.597 97.542 97.697 -6.1757 61 39 2 0 0 0 0.61381 1 69552 69552 0.52476 0 1 9198400 26820 5115 18088 18435 31709 31709 0.17303412879300595 KKKERKEKEEK 11 Unmodified _KKKERKEKEEK_ 0 0 0 ENST00000559509.1_1_15:37391574-37392101:+|nuORF ENST00000559509.1_1_15:37391574-37392101:+|nuORF ENST00000559509.1_1_15:37391574-37392101:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.8268432617188 3 487.291219 1458.85183 1.5781 0.00076898 0.83546 0.00040711 2.4135 0.0011761 487.291494837592 109.79 0.051315 103.61 103.58 103.63 -6.1757 10 8 2 0 0 0 0.74452 1 73302 73302 0.073264 0 1 1524700 26821 15297 18089 18436 31710 31710 0.14075436534562868 KKKGHPGR 8 Unmodified _KKKGHPGR_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4;ENST00000594066.1_1_19:15355493-15355571:-|nuORF ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2818298339844 2 454.28286 906.551168 NaN NaN NaN NaN NaN NaN NaN 20.051 1 20.08 19.58 20.58 0.028357 0 0 0 0.97444 1 10138 10138 2.5775 0 1 26822 5378 18090 18437 31711 31711 0.0941543918527259 KKKGKASH 8 Unmodified _KKKGKASH_ 0 0 0 REV__ENSG00000172188|ENST00000641580|OR4C11 REV__ENSG00000172188|ENST00000641580|OR4C11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2780456542969 2 442.277244 882.539935 0.29666 0.0001312 0.81254 0.00035937 1.1092 0.00049057 442.2775721754615 93.286 0.54018 93.286 92.971 93.512 0 51 32 2 0 0 0 0.80992 1 51665 51665 0.69038 0 1 443010 + 26823 22631 18091 18438 31712 31712 0.09396617091124426 KKKGRKKA 8 Unmodified _KKKGRKKA_ 0 0 0 REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2 REV__nc|ENSG00000099875|Q9HBH9-2|MKNK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.3279418945312 2 472.329811 942.645068 -0.69225 -0.00032697 -0.40822 -0.00019282 -1.1005 -0.00051979 472.32936182628606 103.5 0.18822 103.45 103.36 103.55 -0.047928 11 7 2 0 0 0 0.80975 1 57481 57481 0.79363 0 1 1251000 + 26824 17989 18092 18439 31713 31713 0.17145158287542017 KKKHKKTF 8 Unmodified _KKKHKKTF_ 0 0 0 REV__ENST00000446953.1_1_6:20042889-20043069:-|nuORF REV__ENST00000446953.1_1_6:20042889-20043069:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.83935546875 2 522.837468 1043.66038 1.6535 0.00086452 0.3539 0.00018503 2.0074 0.0010495 522.8375044069348 109.56 2.8772 103.38 100.94 103.82 -6.1757 1186 553 3 0 0 0 0.81007 1 71881 71881 0.6015 0.076735 1 10843000 + 26825 27151 18093 18440 31714 31714 0.1403002508473037 KKKHKKTF 8 Unmodified _KKKHKKTF_ 0 0 0 REV__ENST00000446953.1_1_6:20042889-20043069:-|nuORF REV__ENST00000446953.1_1_6:20042889-20043069:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.8401489257812 2 522.837468 1043.66038 NaN NaN NaN NaN NaN NaN NaN 106.93 1 100.76 100.26 101.26 -6.1757 0 0 0 0.97444 1 71553 71553 0.6015 0.076735 1 + 26826 27151 18093 18440 31715 31715 0.1403002508473037 KKKHLLQI 8 Unmodified _KKKHLLQI_ 0 0 0 nc|ENSG00000131951|Q6ZRR7|LRRC9;nc|ENSG00000131951|Q6ZRR7-2|LRRC9;ENSG00000131951|ENST00000570145|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 MSMS AL20221201_MKP_PDAC_01 4 504.3399047851562 2 504.339844 1006.66514 NaN NaN NaN NaN NaN NaN NaN 105.75 1 99.572 99.072 100.07 -6.1757 0 0 0 0.97444 1 70833 70833 0.69038 0 1 26827 16191 18094 18441 31716 31716 0.16206909227526012 KKKILFFPSL 10 Unmodified _KKKILFFPSL_ 0 0 0 REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF REV__ENST00000567806.1_1_16:27471942-27472230:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 610.890869140625 2 610.891909 1219.76927 NaN NaN NaN NaN NaN NaN NaN 107.39 1 101.22 100.72 101.72 -6.1757 0 0 0 0.99091 1 71833 71833 1.6526 0.17072 1 + 26828 28935 18095 18442 31717 31717 0.16817191264385656 KKKIRGPE 8 Unmodified _KKKIRGPE_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3058776855469 2 478.306001 954.597449 1.268 0.00060651 0.10352 4.9515E-05 1.3716 0.00065602 478.3058417233279 102.61 0.25818 96.43 96.298 96.556 -6.1757 79 46 2 0 0 0 0.80992 1 68910 68910 0.69038 0 1 10321000 26829 1171 18096 18443 31718 31718 0.11833459296713045 KKKKGKGGGL 10 Unmodified _KKKKGKGGGL_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.342529296875 2 500.834926 999.655299 0.072307 3.6214E-05 0.91324 0.00045738 0.98555 0.0004936 500.8353042980132 103.26 0.24001 103.15 102.96 103.2 -0.10458 18 11 2 0 0 0 0.24012 1 56259 56259 0 0 1 141630 + 26830 19174 18097 18444 31719 31719 0.15545721222156317 KKKKGKGGGL 10 Unmodified _KKKKGKGGGL_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.8351745605469 2 500.834926 999.655299 -0.60132 -0.00030116 0.81679 0.00040908 0.21546 0.00010791 500.83509503552 103.19 0.356 103.15 102.98 103.34 -0.04792 28 14 3 0 0 0 0.72607 1 57279 57279 0 0 1 1825500 + 26831 19174 18097 18444 31720 31720 0.15545721222156317 KKKKGKGGGL 10 Unmodified _KKKKGKGGGL_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.834926 999.655299 -0.60132 -0.00030116 0.81679 0.00040908 0.21546 0.00010791 500.83509503552 103.19 0.356 103.15 102.98 103.34 -0.04792 -0.0037383 -4.4287E-05 NaN 0 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1825500 + 26832 19174 18097 18444 0.15545721222156317 KKKKIFCISP 10 Unmodified _KKKKIFCISP_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.8701171875 2 596.367744 1190.72094 0.42948 0.00025613 -0.05659 -3.3748E-05 0.37289 0.00022238 596.3677608694887 97.742 0.74461 97.499 97.146 97.89 -0.24277 87 33 3 0 0 0 0.72247 3 53251 53251;53362;53470 0.40072 0.40072 1 12484000 26833 9559 18098 18445 31721;31722;31723 31721 0.13320374352815634 KKKKKEEKYTR 11 Unmodified _KKKKKEEKYTR_ 0 0 0 ENST00000415807.6_1_3:172115292-172115697:+|nuORF ENST00000415807.6_1_3:172115292-172115697:+|nuORF ENST00000415807.6_1_3:172115292-172115697:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.4462280273438 2 733.4461 1464.87765 NaN NaN NaN NaN NaN NaN NaN 107.25 1 107.2 106.7 107.7 -0.047607 0 0 0 0.9435 1 59426 59426 0 0 1 26834 13026 18099 18446 31724 31724 0.16380330776837582 KKKKKGEG 8 Unmodified _KKKKKGEG_ 0 0 0 REV__ENST00000500276.6_1_12:26109641-26111021:-|nuORF REV__ENST00000500276.6_1_12:26109641-26111021:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.7928771972656 2 451.792727 901.5709 NaN NaN NaN NaN NaN NaN NaN 105.77 1 99.59 99.09 100.09 -6.1757 0 0 0 0.97444 1 70844 70844 0.69038 0 1 + 26835 28006 18100 18447 31725 31725 0.11617770405382544 KKKKKKGIE 9 Unmodified _KKKKKKGIE_ 0 0 0 REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF REV__ENST00000433510.2_1_17:46713761-46713989:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.8709716796875 2 543.871508 1085.72846 NaN NaN NaN NaN NaN NaN NaN 104.03 1 97.854 97.354 98.354 -6.1757 0 0 0 0.85798 1 69695 69695 0.52476 0.52476 1 + 26836 27000 18101 18448 31726 31726 0.18902849944765876 KKKKKKKAA 9 Unmodified _KKKKKKKAA_ 0 0 0 REV__nc|ENSG00000121766|Q9NP64-2|ZCCHC17 REV__nc|ENSG00000121766|Q9NP64-2|ZCCHC17 MSMS AL20221201_MKP_PDAC_01 4 529.3845825195312 2 529.382043 1056.74953 NaN NaN NaN NaN NaN NaN NaN 105.65 1 99.478 98.978 99.978 -6.1757 0 0 0 0.8622 1 70778 70778 0 0 1 + 26837 19309 18102 18449 31727 31727 0.22342860044273039 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 2.898 1 2.898 2.398 3.398 0 0 0 0 1.0061 1 1403 1403 0 0 1 + 26838 19955 18103 18450 31728 31728 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2839965820312 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.567 1 4.567 4.067 5.067 0 0 0 0 1.0061 1 2199 2199 0 0 1 + 26839 19955 18103 18450 31729 31729 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2845458984375 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.9885 1 4.9885 4.4885 5.4885 0 0 0 0 1.0061 1 2400 2400 0 0 1 + 26840 19955 18103 18450 31730 31730 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.673 1 5.673 5.173 6.173 0 0 0 0 1.0061 1 2726 2726 0 0 1 + 26841 19955 18103 18450 31731 31731 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2843017578125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.9187 1 5.9187 5.4187 6.4187 0 0 0 0 1.0061 1 2842 2842 0 0 1 + 26842 19955 18103 18450 31732 31732 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.7679 1 6.7679 6.2679 7.2679 0 0 0 0 1.0061 1 3248 3248 0 0 1 + 26843 19955 18103 18450 31733 31733 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.9431 1 6.9431 6.4431 7.4431 0 0 0 0 1.0061 1 3330 3330 0 0 1 + 26844 19955 18103 18450 31734 31734 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.8717 1 7.8717 7.3717 8.3717 0 0 0 0 1.0061 1 3762 3762 0 0 1 + 26845 19955 18103 18450 31735 31735 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.8048 1 8.8048 8.3048 9.3048 0 0 0 0 1.0061 1 4200 4200 0 0 1 + 26846 19955 18103 18450 31736 31736 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2838134765625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.5109 1 9.5109 9.0109 10.011 0 0 0 0 1.0061 1 4526 4526 0 0 1 + 26847 19955 18103 18450 31737 31737 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 10.531 1 10.531 10.031 11.031 0 0 0 0 1.0061 1 4997 4997 0 0 1 + 26848 19955 18103 18450 31738 31738 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2843627929688 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.544 1 13.544 13.044 14.044 0 0 0 0 1.0061 1 6408 6408 0 0 1 + 26849 19955 18103 18450 31739 31739 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2835998535156 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.201 1 14.201 13.701 14.701 0 0 0 0 1.0061 1 6734 6734 0 0 1 + 26850 19955 18103 18450 31740 31740 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.383 1 14.383 13.883 14.883 0 0 0 0 1.0061 1 6832 6832 0 0 1 + 26851 19955 18103 18450 31741 31741 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2837219238281 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.565 1 14.565 14.065 15.065 0 0 0 0 1.0061 1 6934 6934 0 0 1 + 26852 19955 18103 18450 31742 31742 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.862 1 14.862 14.362 15.362 0 0 0 0 1.0061 1 7105 7105 0 0 1 + 26853 19955 18103 18450 31743 31743 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2839050292969 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 15.66 1 15.66 15.16 16.16 0 0 0 0 1.0061 1 7563 7563 0 0 1 + 26854 19955 18103 18450 31744 31744 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2840881347656 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 26.33 1 26.33 25.83 26.83 0 0 0 0 1.0061 1 13532 13532 0 0 1 + 26855 19955 18103 18450 31745 31745 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 26.979 1 26.979 26.479 27.479 0 0 0 0 1.0061 1 13887 13887 0 0 1 + 26856 19955 18103 18450 31746 31746 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2841491699219 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 27.281 1 27.281 26.781 27.781 0 0 0 0 1.0061 1 14050 14050 0 0 1 + 26857 19955 18103 18450 31747 31747 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2840881347656 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 28.567 1 28.567 28.067 29.067 0 0 0 0 1.0061 1 14763 14763 0 0 1 + 26858 19955 18103 18450 31748 31748 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.4800109863281 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 59.829 1 59.829 59.329 60.329 0 0 0 0 1.0061 1 33352 33352 0 0 1 + 26859 19955 18103 18450 31749 31749 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2842102050781 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 65.74 1 65.74 65.24 66.24 0 0 0 0 1.0061 1 36665 36665 0 0 1 + 26860 19955 18103 18450 31750 31750 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.28369140625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 66.617 1 66.617 66.117 67.117 0 0 0 0 1.0061 1 37154 37154 0 0 1 + 26861 19955 18103 18450 31751 31751 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2844543457031 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 84.784 1 84.784 84.284 85.284 0 0 0 0 1.0061 1 46996 46996 0 0 1 + 26862 19955 18103 18450 31752 31752 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2847290039062 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.14433 1 0.070406 -0.42959 0.57041 -0.07392 0 0 0 1.0061 1 74 74 0 0 1 + 26863 19955 18103 18450 31753 31753 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2847900390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.67213 1 0.59884 0.09884 1.0988 -0.073289 0 0 0 1.0061 1 338 338 0 0 1 + 26864 19955 18103 18450 31754 31754 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2842712402344 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.2594 1 1.1861 0.68608 1.6861 -0.07329 0 0 0 1.0061 1 631 631 0 0 1 + 26865 19955 18103 18450 31755 31755 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2841491699219 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.2183 1 3.1463 2.6463 3.6463 -0.072029 0 0 0 1.0061 1 1583 1583 0 0 1 + 26866 19955 18103 18450 31756 31756 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2838745117188 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.8969 1 3.824 3.324 4.324 -0.07287 0 0 0 1.0061 1 1924 1924 0 0 1 + 26867 19955 18103 18450 31757 31757 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2845458984375 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.8566 1 4.7837 4.2837 5.2837 -0.072869 0 0 0 1.0061 1 2402 2402 0 0 1 + 26868 19955 18103 18450 31758 31758 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2844543457031 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.0288 1 5.9513 5.4513 6.4513 -0.07749 0 0 0 1.0061 1 2975 2975 0 0 1 + 26869 19955 18103 18450 31759 31759 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.3607 1 6.2761 5.7761 6.7761 -0.08463 0 0 0 1.0061 1 3141 3141 0 0 1 + 26870 19955 18103 18450 31760 31760 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2843322753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.6055 1 6.5208 6.0208 7.0208 -0.08463 0 0 0 1.0061 1 3259 3259 0 0 1 + 26871 19955 18103 18450 31761 31761 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2840270996094 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.8512 1 6.7666 6.2666 7.2666 -0.08463 0 0 0 1.0061 1 3375 3375 0 0 1 + 26872 19955 18103 18450 31762 31762 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2842407226562 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.0676 1 6.983 6.483 7.483 -0.08463 0 0 0 1.0061 1 3479 3479 0 0 1 + 26873 19955 18103 18450 31763 31763 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2839965820312 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.4067 1 7.3151 6.8151 7.8151 -0.09156 0 0 0 1.0061 1 3641 3641 0 0 1 + 26874 19955 18103 18450 31764 31764 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2843322753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.6094 1 7.5178 7.0178 8.0178 -0.09156 0 0 0 1.0061 1 3739 3739 0 0 1 + 26875 19955 18103 18450 31765 31765 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2844848632812 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.9724 1 7.8808 7.3808 8.3808 -0.09156 0 0 0 1.0061 1 3917 3917 0 0 1 + 26876 19955 18103 18450 31766 31766 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2844848632812 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.2108 1 8.1193 7.6193 8.6193 -0.09156 0 0 0 1.0061 1 4033 4033 0 0 1 + 26877 19955 18103 18450 31767 31767 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.42 1 8.3285 7.8285 8.8285 -0.09156 0 0 0 1.0061 1 4132 4132 0 0 1 + 26878 19955 18103 18450 31768 31768 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2839660644531 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.7084 1 8.6168 8.1168 9.1168 -0.09156 0 0 0 1.0061 1 4266 4266 0 0 1 + 26879 19955 18103 18450 31769 31769 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2843933105469 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.2622 1 9.1706 8.6706 9.6706 -0.09156 0 0 0 1.0061 1 4533 4533 0 0 1 + 26880 19955 18103 18450 31770 31770 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2840270996094 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.9711 1 9.8814 9.3814 10.381 -0.08967 0 0 0 1.0061 1 4868 4868 0 0 1 + 26881 19955 18103 18450 31771 31771 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2850036621094 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.063 1 10.984 10.484 11.484 -0.07938 0 0 0 1.0061 1 5386 5386 0 0 1 + 26882 19955 18103 18450 31772 31772 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 12.943 1 12.894 12.394 13.394 -0.048298 0 0 0 1.0061 1 6282 6282 0 0 1 + 26883 19955 18103 18450 31773 31773 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2847595214844 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.287 1 13.238 12.738 13.738 -0.048298 0 0 0 1.0061 1 6447 6447 0 0 1 + 26884 19955 18103 18450 31774 31774 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2844543457031 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 15.843 1 15.829 15.329 16.329 -0.014067 0 0 0 1.0061 1 7793 7793 0 0 1 + 26885 19955 18103 18450 31775 31775 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 16.56 1 16.562 16.062 17.062 0.0010548 0 0 0 1.0061 1 8173 8173 0 0 1 + 26886 19955 18103 18450 31776 31776 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 17.028 1 17.029 16.529 17.529 0.0010548 0 0 0 1.0061 1 8436 8436 0 0 1 + 26887 19955 18103 18450 31777 31777 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2838134765625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 18.615 1 18.638 18.138 19.138 0.023106 0 0 0 1.0061 1 9345 9345 0 0 1 + 26888 19955 18103 18450 31778 31778 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2166748046875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 21.032 1 21.06 20.56 21.56 0.028357 0 0 0 1.0061 1 10660 10660 0 0 1 + 26889 19955 18103 18450 31779 31779 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2843322753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 65.574 1 65.09 64.59 65.59 -0.48428 0 0 0 1.0061 1 35794 35794 0 0 1 + 26890 19955 18103 18450 31780 31780 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 84.186 1 83.686 83.186 84.186 -0.49961 0 0 0 1.0061 1 46072 46072 0 0 1 + 26891 19955 18103 18450 31781 31781 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5108947753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 90.639 1 90.144 89.644 90.644 -0.49457 0 0 0 1.0061 1 49543 49543 0 0 1 + 26892 19955 18103 18450 31782 31782 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2843322753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.8447 1 3.8384 3.3384 4.3384 -0.0062969 0 0 0 1.0061 1 1952 1952 0 0 1 + 26893 19955 18103 18450 31783 31783 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2841796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.0237 1 4.0174 3.5174 4.5174 -0.0062971 0 0 0 1.0061 1 2039 2039 0 0 1 + 26894 19955 18103 18450 31784 31784 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2846069335938 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.579 1 4.5727 4.0727 5.0727 -0.0062971 0 0 0 1.0061 1 2313 2313 0 0 1 + 26895 19955 18103 18450 31785 31785 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2840881347656 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.5232 1 5.5243 5.0243 6.0243 0.0010915 0 0 0 1.0061 1 2781 2781 0 0 1 + 26896 19955 18103 18450 31786 31786 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2842712402344 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.7331 1 5.7341 5.2341 6.2341 0.0010915 0 0 0 1.0061 1 2887 2887 0 0 1 + 26897 19955 18103 18450 31787 31787 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2843627929688 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.5155 1 7.5308 7.0308 8.0308 0.015238 0 0 0 1.0061 1 3749 3749 0 0 1 + 26898 19955 18103 18450 31788 31788 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2844848632812 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.8682 1 7.8834 7.3834 8.3834 0.015238 0 0 0 1.0061 1 3921 3921 0 0 1 + 26899 19955 18103 18450 31789 31789 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2839660644531 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.313 1 11.328 10.828 11.828 0.015327 0 0 0 1.0061 1 5586 5586 0 0 1 + 26900 19955 18103 18450 31790 31790 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2843322753906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.84 1 13.847 13.347 14.347 0.0073986 0 0 0 1.0061 1 6838 6838 0 0 1 + 26901 19955 18103 18450 31791 31791 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2847900390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 15.134 1 15.14 14.64 15.64 0.0057774 0 0 0 1.0061 1 7531 7531 0 0 1 + 26902 19955 18103 18450 31792 31792 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8798828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 30.471 1 30.501 30.001 31.001 0.030106 0 0 0 1.0061 1 15933 15933 0 0 1 + 26903 19955 18103 18450 31793 31793 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2843627929688 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 30.882 1 30.912 30.412 31.412 0.030106 0 0 0 1.0061 1 16160 16160 0 0 1 + 26904 19955 18103 18450 31794 31794 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2030944824219 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 45.696 1 45.668 45.168 46.168 -0.028011 0 0 0 1.0061 1 24559 24559 0 0 1 + 26905 19955 18103 18450 31795 31795 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2854919433594 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.36487 1 -2.1171 -2.6171 -1.6171 -2.482 0 0 0 1.0061 1 193 193 0 0 1 + 26906 19955 18103 18450 31796 31796 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850036621094 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.53811 1 -1.9439 -2.4439 -1.4439 -2.482 0 0 0 1.0061 1 285 285 0 0 1 + 26907 19955 18103 18450 31797 31797 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847595214844 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.70962 1 -1.7723 -2.2723 -1.2723 -2.482 0 0 0 1.0061 1 375 375 0 0 1 + 26908 19955 18103 18450 31798 31798 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2851257324219 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 0.88446 1 -1.5975 -2.0975 -1.0975 -2.482 0 0 0 1.0061 1 464 464 0 0 1 + 26909 19955 18103 18450 31799 31799 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.285400390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.0576 1 -1.4243 -1.9243 -0.92434 -2.482 0 0 0 1.0061 1 553 553 0 0 1 + 26910 19955 18103 18450 31800 31800 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850036621094 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.2297 1 -1.2522 -1.7522 -0.75222 -2.482 0 0 0 1.0061 1 637 637 0 0 1 + 26911 19955 18103 18450 31801 31801 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2848205566406 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.4105 1 -1.0715 -1.5715 -0.57151 -2.482 0 0 0 1.0061 1 729 729 0 0 1 + 26912 19955 18103 18450 31802 31802 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2853698730469 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.5841 1 -0.89784 -1.3978 -0.39784 -2.482 0 0 0 1.0061 1 821 821 0 0 1 + 26913 19955 18103 18450 31803 31803 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.284912109375 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.7646 1 -0.71733 -1.2173 -0.21733 -2.482 0 0 0 1.0061 1 910 910 0 0 1 + 26914 19955 18103 18450 31804 31804 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2853088378906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 1.9368 1 -0.54515 -1.0451 -0.045147 -2.482 0 0 0 1.0061 1 993 993 0 0 1 + 26915 19955 18103 18450 31805 31805 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852478027344 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 2.1083 1 -0.37365 -0.87365 0.12635 -2.482 0 0 0 1.0061 1 1081 1081 0 0 1 + 26916 19955 18103 18450 31806 31806 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2845153808594 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 2.2895 1 -0.19244 -0.69244 0.30756 -2.482 0 0 0 1.0061 1 1171 1171 0 0 1 + 26917 19955 18103 18450 31807 31807 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2849731445312 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 2.5347 1 0.052712 -0.44729 0.55271 -2.482 0 0 0 1.0061 1 1293 1293 0 0 1 + 26918 19955 18103 18450 31808 31808 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2845764160156 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 2.8041 1 0.32216 -0.17784 0.82216 -2.482 0 0 0 1.0061 1 1430 1430 0 0 1 + 26919 19955 18103 18450 31809 31809 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.285400390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.0768 1 0.59483 0.094831 1.0948 -2.482 0 0 0 1.0061 1 1567 1567 0 0 1 + 26920 19955 18103 18450 31810 31810 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2851257324219 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.5116 1 1.0296 0.52964 1.5296 -2.482 0 0 0 1.0061 1 1785 1785 0 0 1 + 26921 19955 18103 18450 31811 31811 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852783203125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 3.9351 1 1.4531 0.95309 1.9531 -2.482 0 0 0 1.0061 1 1995 1995 0 0 1 + 26922 19955 18103 18450 31812 31812 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.284912109375 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.1181 1 1.6362 1.1362 2.1362 -2.482 0 0 0 1.0061 1 2090 2090 0 0 1 + 26923 19955 18103 18450 31813 31813 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847900390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.4454 1 1.9634 1.4634 2.4634 -2.482 0 0 0 1.0061 1 2255 2255 0 0 1 + 26924 19955 18103 18450 31814 31814 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2838134765625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.8054 1 2.3234 1.8234 2.8234 -2.482 0 0 0 1.0061 1 2439 2439 0 0 1 + 26925 19955 18103 18450 31815 31815 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852783203125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 4.9909 1 2.509 2.009 3.009 -2.482 0 0 0 1.0061 1 2534 2534 0 0 1 + 26926 19955 18103 18450 31816 31816 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2845764160156 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.1626 1 2.6806 2.1806 3.1806 -2.482 0 0 0 1.0061 1 2622 2622 0 0 1 + 26927 19955 18103 18450 31817 31817 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2840881347656 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.3324 1 2.8504 2.3504 3.3504 -2.482 0 0 0 1.0061 1 2707 2707 0 0 1 + 26928 19955 18103 18450 31818 31818 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850341796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.5294 1 3.0474 2.5474 3.5474 -2.482 0 0 0 1.0061 1 2805 2805 0 0 1 + 26929 19955 18103 18450 31819 31819 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2854919433594 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 5.8888 1 3.4069 2.9069 3.9069 -2.482 0 0 0 1.0061 1 2985 2985 0 0 1 + 26930 19955 18103 18450 31820 31820 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847900390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.1054 1 3.6235 3.1235 4.1235 -2.482 0 0 0 1.0061 1 3091 3091 0 0 1 + 26931 19955 18103 18450 31821 31821 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2854614257812 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.2825 1 3.8006 3.3006 4.3006 -2.482 0 0 0 1.0061 1 3178 3178 0 0 1 + 26932 19955 18103 18450 31822 31822 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852172851562 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.4634 1 3.9814 3.4814 4.4814 -2.482 0 0 0 1.0061 1 3268 3268 0 0 1 + 26933 19955 18103 18450 31823 31823 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.28466796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.6393 1 4.1573 3.6573 4.6573 -2.482 0 0 0 1.0061 1 3355 3355 0 0 1 + 26934 19955 18103 18450 31824 31824 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2855834960938 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 6.8485 1 4.3665 3.8665 4.8665 -2.482 0 0 0 1.0061 1 3460 3460 0 0 1 + 26935 19955 18103 18450 31825 31825 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850341796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.0561 1 4.5741 4.0741 5.0741 -2.482 0 0 0 1.0061 1 3565 3565 0 0 1 + 26936 19955 18103 18450 31826 31826 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2846984863281 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.2396 1 4.7576 4.2576 5.2576 -2.482 0 0 0 1.0061 1 3654 3654 0 0 1 + 26937 19955 18103 18450 31827 31827 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847595214844 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.584 1 5.102 4.602 5.602 -2.482 0 0 0 1.0061 1 3826 3826 0 0 1 + 26938 19955 18103 18450 31828 31828 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2849426269531 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.759 1 5.2771 4.7771 5.7771 -2.482 0 0 0 1.0061 1 3917 3917 0 0 1 + 26939 19955 18103 18450 31829 31829 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2854919433594 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 7.9317 1 5.4497 4.9497 5.9497 -2.482 0 0 0 1.0061 1 4004 4004 0 0 1 + 26940 19955 18103 18450 31830 31830 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.28466796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.1031 1 5.6211 5.1211 6.1211 -2.482 0 0 0 1.0061 1 4090 4090 0 0 1 + 26941 19955 18103 18450 31831 31831 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847900390625 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.2758 1 5.7938 5.2938 6.2938 -2.482 0 0 0 1.0061 1 4175 4175 0 0 1 + 26942 19955 18103 18450 31832 31832 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2853698730469 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.4549 1 5.9729 5.4729 6.4729 -2.482 0 0 0 1.0061 1 4268 4268 0 0 1 + 26943 19955 18103 18450 31833 31833 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850341796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.6275 1 6.1455 5.6455 6.6455 -2.482 0 0 0 1.0061 1 4355 4355 0 0 1 + 26944 19955 18103 18450 31834 31834 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2840576171875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 8.9875 1 6.5055 6.0055 7.0055 -2.482 0 0 0 1.0061 1 4532 4532 0 0 1 + 26945 19955 18103 18450 31835 31835 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847290039062 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.1667 1 6.6847 6.1847 7.1847 -2.482 0 0 0 1.0061 1 4624 4624 0 0 1 + 26946 19955 18103 18450 31836 31836 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2847290039062 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.3383 1 6.8563 6.3563 7.3563 -2.482 0 0 0 1.0061 1 4712 4712 0 0 1 + 26947 19955 18103 18450 31837 31837 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850646972656 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.516 1 7.034 6.534 7.534 -2.482 0 0 0 1.0061 1 4800 4800 0 0 1 + 26948 19955 18103 18450 31838 31838 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852478027344 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.6973 1 7.2154 6.7154 7.7154 -2.482 0 0 0 1.0061 1 4892 4892 0 0 1 + 26949 19955 18103 18450 31839 31839 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2846984863281 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 9.8757 1 7.3938 6.8938 7.8938 -2.482 0 0 0 1.0061 1 4980 4980 0 0 1 + 26950 19955 18103 18450 31840 31840 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2851867675781 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 10.395 1 7.9134 7.4134 8.4134 -2.482 0 0 0 1.0061 1 5242 5242 0 0 1 + 26951 19955 18103 18450 31841 31841 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2853088378906 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 10.573 1 8.0915 7.5915 8.5915 -2.482 0 0 0 1.0061 1 5330 5330 0 0 1 + 26952 19955 18103 18450 31842 31842 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2848815917969 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 10.926 1 8.444 7.944 8.944 -2.482 0 0 0 1.0061 1 5503 5503 0 0 1 + 26953 19955 18103 18450 31843 31843 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2851867675781 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.1 1 8.6179 8.1179 9.1179 -2.482 0 0 0 1.0061 1 5589 5589 0 0 1 + 26954 19955 18103 18450 31844 31844 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850952148438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.284 1 8.8019 8.3019 9.3019 -2.482 0 0 0 1.0061 1 5679 5679 0 0 1 + 26955 19955 18103 18450 31845 31845 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2853393554688 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.468 1 8.9859 8.4859 9.4859 -2.482 0 0 0 1.0061 1 5773 5773 0 0 1 + 26956 19955 18103 18450 31846 31846 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850952148438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.643 1 9.1608 8.6608 9.6608 -2.482 0 0 0 1.0061 1 5861 5861 0 0 1 + 26957 19955 18103 18450 31847 31847 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2843017578125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 11.815 1 9.3327 8.8327 9.8327 -2.482 0 0 0 1.0061 1 5944 5944 0 0 1 + 26958 19955 18103 18450 31848 31848 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2841186523438 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 12.089 1 9.6073 9.1073 10.107 -2.482 0 0 0 1.0061 1 6099 6099 0 0 1 + 26959 19955 18103 18450 31849 31849 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2845764160156 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 12.433 1 9.9512 9.4512 10.451 -2.482 0 0 0 1.0061 1 6288 6288 0 0 1 + 26960 19955 18103 18450 31850 31850 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2844848632812 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 12.782 1 10.3 9.7998 10.8 -2.482 0 0 0 1.0061 1 6470 6470 0 0 1 + 26961 19955 18103 18450 31851 31851 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2852478027344 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 12.951 1 10.469 9.9694 10.969 -2.482 0 0 0 1.0061 1 6557 6557 0 0 1 + 26962 19955 18103 18450 31852 31852 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.284423828125 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.123 1 10.641 10.141 11.141 -2.482 0 0 0 1.0061 1 6647 6647 0 0 1 + 26963 19955 18103 18450 31853 31853 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2848205566406 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.297 1 10.815 10.315 11.315 -2.482 0 0 0 1.0061 1 6738 6738 0 0 1 + 26964 19955 18103 18450 31854 31854 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2846374511719 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.821 1 11.318 10.818 11.818 -2.5029 0 0 0 1.0061 1 7007 7007 0 0 1 + 26965 19955 18103 18450 31855 31855 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2850341796875 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 13.996 1 11.493 10.993 11.993 -2.5029 0 0 0 1.0061 1 7095 7095 0 0 1 + 26966 19955 18103 18450 31856 31856 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2854919433594 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.181 1 11.678 11.178 12.178 -2.5029 0 0 0 1.0061 1 7187 7187 0 0 1 + 26967 19955 18103 18450 31857 31857 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.2849731445312 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.394 1 11.892 11.392 12.392 -2.5029 0 0 0 1.0061 1 7309 7309 0 0 1 + 26968 19955 18103 18450 31858 31858 0.25026506998415243 KKKKKKKGKA 10 Unmodified _KKKKKKKGKA_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 391.284912109375 3 391.283559 1170.82885 NaN NaN NaN NaN NaN NaN NaN 14.827 1 12.3 11.8 12.8 -2.5273 0 0 0 1.0061 1 7558 7558 0 0 1 + 26969 19955 18103 18450 31859 31859 0.25026506998415243 KKKKKKKGKL 10 Unmodified _KKKKKKKGKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72;nc|ENSG00000174780|O76094-2|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MSMS AL20221201_MKP_PDAC_01 4 405.3009948730469 3 405.299209 1212.8758 NaN NaN NaN NaN NaN NaN NaN 106.1 1 99.922 99.422 100.42 -6.1757 0 0 0 1.0061 1 71040 71040 0 0 1 26970 8455 18104 18451 31860 31860 0.27787366549569015 KKKKKKKKA 9 Unmodified _KKKKKKKKA_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|25|1|sense;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000127616|P51532-5|SMARCA4;ENST00000522197.1_1_8:122652185-122654912:+|nuORF;REV__ENSG00000189134|ENST00000343684|NKAPL;REV__ENSG00000183354|ENST00000399933|KIAA2026;REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF;REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF;REV__nc|ENSG00000121766|Q9NP64-2|ZCCHC17 nc|ENSG00000127616|P51532-5|SMARCA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.3052673339844 3 372.276404 1113.80738 NaN NaN NaN NaN NaN NaN NaN 100.57 1 100.53 100.03 101.03 -0.04216 0 0 0 0.8622 1 55866 55866 0 0 1 26971 4023;4270;14752;23765;23342;25893;26661;19309 18105 18452 31861 31861 0.2550312196970026 KKKKKKKKKDE 11 Unmodified _KKKKKKKKKDE_ 0 0 0 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 ENSG00000235750|ENST00000423313|KIAA0040 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.4734497070312 2 708.47466 1414.93477 NaN NaN NaN NaN NaN NaN NaN 96.006 1 96.006 95.506 96.506 0 0 0 0 0.9435 1 53058 53058 0 0 1 26972 10640 18106 18453 31862 31862 0.2438979805319832 KKKKKKKKQL 10 Unmodified _KKKKKKKKQL_ 0 0 0 REV__ENST00000607315.1_1_8:30013391-30013664:-|nuORF REV__ENST00000607315.1_1_8:30013391-30013664:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.964599609375 2 642.963732 1283.91291 NaN NaN NaN NaN NaN NaN NaN 18.096 1 18.102 17.602 18.602 0.0060463 0 0 0 1.0061 1 9157 9157 0 0 1 + 26973 29313 18107 18454 31863 31863 0.2823103809530494 KKKKKKKKRQC 11 Unmodified _KKKKKKKKRQC_ 0 0 0 nc|ENSG00000089335|Q9NR11|ZNF302 nc|ENSG00000089335|Q9NR11|ZNF302 nc|ENSG00000089335|Q9NR11|ZNF302 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 715.9775390625 2 715.976847 1429.93914 NaN NaN NaN NaN NaN NaN NaN 44.727 1 44.705 44.205 45.205 -0.022064 0 0 0 0.9435 1 24006 24006 0 0 1 26974 16071 18108 18455 31864 31864 0.24136983995140326 KKKKKKLVF 9 Unmodified _KKKKKKLVF_ 0 0 0 REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF REV__ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7449340820312 2 573.907894 1145.80123 NaN NaN NaN NaN NaN NaN NaN 36.582 1 36.603 36.103 37.103 0.021545 0 0 0 0.85737 1 19387 19387 0.6015 0.6015 1 + 26975 28191 18109 18456 31865 31865 0.2341660373817831 KKKKKKRKQET 11 Unmodified _KKKKKKRKQET_ 0 0 0 ENSG00000055483|ENST00000449938|USP36 ENSG00000055483|ENST00000449938|USP36 ENSG00000055483|ENST00000449938|USP36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.9733276367188 2 715.469909 1428.92527 1.3452 0.00096248 0.54358 0.00038892 1.8888 0.0013514 715.4699312549869 104.98 0.1563 98.802 98.719 98.875 -6.1757 38 11 4 0 0 0 0.7453 1 70248 70248 0 0 1 251140000 26976 777 18110 18457 31866 31866 0.22796029767687287 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3155822753906 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 1.1779 1 1.1779 0.67789 1.6779 0 0 0 0 1.0061 1 572 572 0 0 1 + 26977 23630 18111 18458 31867 31867 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3159790039062 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.0549 1 2.0549 1.5549 2.5549 0 0 0 0 1.0061 1 1000 1000 0 0 1 + 26978 23630 18111 18458 31868 31868 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3154602050781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.6172 1 2.6172 2.1172 3.1172 0 0 0 0 1.0061 1 1271 1271 0 0 1 + 26979 23630 18111 18458 31869 31869 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3153686523438 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 3.1077 1 3.1077 2.6077 3.6077 0 0 0 0 1.0061 1 1506 1506 0 0 1 + 26980 23630 18111 18458 31870 31870 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3154602050781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 3.2858 1 3.2858 2.7858 3.7858 0 0 0 0 1.0061 1 1595 1595 0 0 1 + 26981 23630 18111 18458 31871 31871 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3154296875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.0923 1 4.0923 3.5923 4.5923 0 0 0 0 1.0061 1 1978 1978 0 0 1 + 26982 23630 18111 18458 31872 31872 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3162231445312 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.7749 1 4.7749 4.2749 5.2749 0 0 0 0 1.0061 1 2298 2298 0 0 1 + 26983 23630 18111 18458 31873 31873 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3158874511719 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.2157 1 5.2157 4.7157 5.7157 0 0 0 0 1.0061 1 2507 2507 0 0 1 + 26984 23630 18111 18458 31874 31874 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3152770996094 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.756 1 5.756 5.256 6.256 0 0 0 0 1.0061 1 2766 2766 0 0 1 + 26985 23630 18111 18458 31875 31875 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3157958984375 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.1697 1 6.1697 5.6697 6.6697 0 0 0 0 1.0061 1 2964 2964 0 0 1 + 26986 23630 18111 18458 31876 31876 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.316162109375 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.4602 1 6.4602 5.9602 6.9602 0 0 0 0 1.0061 1 3103 3103 0 0 1 + 26987 23630 18111 18458 31877 31877 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3158874511719 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.6511 1 6.6511 6.1511 7.1511 0 0 0 0 1.0061 1 3192 3192 0 0 1 + 26988 23630 18111 18458 31878 31878 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3162841796875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.2839 1 7.2839 6.7839 7.7839 0 0 0 0 1.0061 1 3491 3491 0 0 1 + 26989 23630 18111 18458 31879 31879 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3157653808594 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.7757 1 7.7757 7.2757 8.2757 0 0 0 0 1.0061 1 3718 3718 0 0 1 + 26990 23630 18111 18458 31880 31880 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3148193359375 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 8.1063 1 8.1063 7.6063 8.6063 0 0 0 0 1.0061 1 3874 3874 0 0 1 + 26991 23630 18111 18458 31881 31881 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3153686523438 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 9.0362 1 9.0362 8.5362 9.5362 0 0 0 0 1.0061 1 4306 4306 0 0 1 + 26992 23630 18111 18458 31882 31882 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3154907226562 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 9.8894 1 9.8894 9.3894 10.389 0 0 0 0 1.0061 1 4702 4702 0 0 1 + 26993 23630 18111 18458 31883 31883 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.315185546875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 10.571 1 10.571 10.071 11.071 0 0 0 0 1.0061 1 5016 5016 0 0 1 + 26994 23630 18111 18458 31884 31884 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3156127929688 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 12.288 1 12.288 11.788 12.788 0 0 0 0 1.0061 1 5819 5819 0 0 1 + 26995 23630 18111 18458 31885 31885 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3152160644531 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 16.324 1 16.324 15.824 16.824 0 0 0 0 1.0061 1 7949 7949 0 0 1 + 26996 23630 18111 18458 31886 31886 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2057189941406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 24.218 1 24.218 23.718 24.718 0 0 0 0 1.0061 1 12368 12368 0 0 1 + 26997 23630 18111 18458 31887 31887 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.1822204589844 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 26.471 1 26.471 25.971 26.971 0 0 0 0 1.0061 1 13609 13609 0 0 1 + 26998 23630 18111 18458 31888 31888 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5309753417969 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 27.951 1 27.951 27.451 28.451 0 0 0 0 1.0061 1 14416 14416 0 0 1 + 26999 23630 18111 18458 31889 31889 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3159484863281 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 54.984 1 54.984 54.484 55.484 0 0 0 0 1.0061 1 30537 30537 0 0 1 + 27000 23630 18111 18458 31890 31890 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8268737792969 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 59.76 1 59.76 59.26 60.26 0 0 0 0 1.0061 1 33313 33313 0 0 1 + 27001 23630 18111 18458 31891 31891 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3153381347656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 61.073 1 61.073 60.573 61.573 0 0 0 0 1.0061 1 34058 34058 0 0 1 + 27002 23630 18111 18458 31892 31892 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.31640625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 72.469 1 72.469 71.969 72.969 0 0 0 0 1.0061 1 40351 40351 0 0 1 + 27003 23630 18111 18458 31893 31893 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.3157043457031 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 74.623 1 74.623 74.123 75.123 0 0 0 0 1.0061 1 41521 41521 0 0 1 + 27004 23630 18111 18458 31894 31894 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5231628417969 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 77.494 1 77.494 76.994 77.994 0 0 0 0 1.0061 1 43080 43080 0 0 1 + 27005 23630 18111 18458 31895 31895 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3160400390625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 0.27657 1 0.20265 -0.29735 0.70265 -0.07392 0 0 0 1.0061 1 141 141 0 0 1 + 27006 23630 18111 18458 31896 31896 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3156433105469 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.4811 1 7.3896 6.8896 7.8896 -0.09156 0 0 0 1.0061 1 3678 3678 0 0 1 + 27007 23630 18111 18458 31897 31897 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3157348632812 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.7589 1 7.6673 7.1673 8.1673 -0.09156 0 0 0 1.0061 1 3811 3811 0 0 1 + 27008 23630 18111 18458 31898 31898 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3153381347656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 8.1244 1 8.0328 7.5328 8.5328 -0.09156 0 0 0 1.0061 1 3990 3990 0 0 1 + 27009 23630 18111 18458 31899 31899 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3164978027344 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 12.503 1 12.438 11.938 12.938 -0.064889 0 0 0 1.0061 1 6075 6075 0 0 1 + 27010 23630 18111 18458 31900 31900 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3151245117188 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 14.298 1 14.267 13.767 14.767 -0.030868 0 0 0 1.0061 1 6944 6944 0 0 1 + 27011 23630 18111 18458 31901 31901 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3154907226562 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 20.712 1 20.741 20.241 21.241 0.028357 0 0 0 1.0061 1 10490 10490 0 0 1 + 27012 23630 18111 18458 31902 31902 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3154907226562 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 21.769 1 21.792 21.292 22.292 0.022896 0 0 0 1.0061 1 11057 11057 0 0 1 + 27013 23630 18111 18458 31903 31903 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.31591796875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 62.37 1 61.882 61.382 62.382 -0.48764 0 0 0 1.0061 1 33982 33982 0 0 1 + 27014 23630 18111 18458 31904 31904 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.315673828125 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 71.138 1 70.661 70.161 71.161 -0.47735 0 0 0 1.0047 1 38931 38931 0.15932 0 1 + 27015 23630 18111 18458 31905 31905 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3160400390625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 71.673 1 71.197 70.697 71.697 -0.47609 0 0 0 1.0061 1 39225 39225 0 0 1 + 27016 23630 18111 18458 31906 31906 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3157958984375 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 75.943 1 75.466 74.966 75.966 -0.47714 0 0 0 1.0061 1 41574 41574 0 0 1 + 27017 23630 18111 18458 31907 31907 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3159790039062 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 78.329 1 77.843 77.343 78.343 -0.48596 0 0 0 1.0061 1 42900 42900 0 0 1 + 27018 23630 18111 18458 31908 31908 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.3158874511719 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 80.212 1 79.722 79.222 80.222 -0.48932 0 0 0 1.0061 1 43932 43932 0 0 1 + 27019 23630 18111 18458 31909 31909 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3159484863281 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 1.1886 1 1.1679 0.66793 1.6679 -0.020623 0 0 0 1.0061 1 613 613 0 0 1 + 27020 23630 18111 18458 31910 31910 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3154296875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.673 1 2.656 2.156 3.156 -0.017019 0 0 0 1.0061 1 1359 1359 0 0 1 + 27021 23630 18111 18458 31911 31911 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3161926269531 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 3.3647 1 3.3524 2.8524 3.8524 -0.012334 0 0 0 1.0061 1 1708 1708 0 0 1 + 27022 23630 18111 18458 31912 31912 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3153076171875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 3.6669 1 3.6546 3.1546 4.1546 -0.012334 0 0 0 1.0061 1 1863 1863 0 0 1 + 27023 23630 18111 18458 31913 31913 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.315185546875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.3525 1 4.3462 3.8462 4.8462 -0.0062971 0 0 0 1.0061 1 2204 2204 0 0 1 + 27024 23630 18111 18458 31914 31914 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3152465820312 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.6594 1 4.6531 4.1531 5.1531 -0.0062971 0 0 0 1.0061 1 2355 2355 0 0 1 + 27025 23630 18111 18458 31915 31915 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3156127929688 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.843 1 4.8367 4.3367 5.3367 -0.0062971 0 0 0 1.0061 1 2444 2444 0 0 1 + 27026 23630 18111 18458 31916 31916 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3158264160156 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.1631 1 5.1641 4.6641 5.6641 0.0010915 0 0 0 1.0061 1 2602 2602 0 0 1 + 27027 23630 18111 18458 31917 31917 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3150634765625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.6956 1 5.6967 5.1967 6.1967 0.0010915 0 0 0 1.0061 1 2867 2867 0 0 1 + 27028 23630 18111 18458 31918 31918 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3155822753906 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.1144 1 6.1234 5.6234 6.6234 0.0089307 0 0 0 1.0061 1 3073 3073 0 0 1 + 27029 23630 18111 18458 31919 31919 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3158264160156 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.0304 1 7.0394 6.5394 7.5394 0.0089307 0 0 0 1.0061 1 3507 3507 0 0 1 + 27030 23630 18111 18458 31920 31920 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.31591796875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.2776 1 7.2928 6.7928 7.7928 0.015238 0 0 0 1.0061 1 3631 3631 0 0 1 + 27031 23630 18111 18458 31921 31921 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3151550292969 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 11.018 1 11.033 10.533 11.533 0.015327 0 0 0 1.0061 1 5441 5441 0 0 1 + 27032 23630 18111 18458 31922 31922 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3150329589844 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 11.412 1 11.427 10.927 11.927 0.015327 0 0 0 1.0061 1 5632 5632 0 0 1 + 27033 23630 18111 18458 31923 31923 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3147277832031 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 13.992 1 13.999 13.499 14.499 0.0073986 0 0 0 1.0061 1 6920 6920 0 0 1 + 27034 23630 18111 18458 31924 31924 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3161010742188 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 17.193 1 17.198 16.698 17.698 0.0050564 0 0 0 1.0061 1 8661 8661 0 0 1 + 27035 23630 18111 18458 31925 31925 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.31591796875 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 17.535 1 17.54 17.04 18.04 0.0050564 0 0 0 1.0061 1 8849 8849 0 0 1 + 27036 23630 18111 18458 31926 31926 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3160705566406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 20.057 1 20.065 19.565 20.565 0.0078487 0 0 0 1.0061 1 10220 10220 0 0 1 + 27037 23630 18111 18458 31927 31927 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3158569335938 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 20.365 1 20.376 19.876 20.876 0.010553 0 0 0 1.0061 1 10385 10385 0 0 1 + 27038 23630 18111 18458 31928 31928 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5398254394531 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 31.597 1 31.627 31.127 32.127 0.030106 0 0 0 1.0061 1 16563 16563 0 0 1 + 27039 23630 18111 18458 31929 31929 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3168029785156 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 0.39786 1 -2.0841 -2.5841 -1.5841 -2.482 0 0 0 1.0061 1 211 211 0 0 1 + 27040 23630 18111 18458 31930 31930 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3165893554688 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 0.9518 1 -1.5302 -2.0302 -1.0302 -2.482 0 0 0 1.0061 1 499 499 0 0 1 + 27041 23630 18111 18458 31931 31931 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3166198730469 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 1.3204 1 -1.1615 -1.6615 -0.66152 -2.482 0 0 0 1.0061 1 681 681 0 0 1 + 27042 23630 18111 18458 31932 31932 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3164672851562 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 1.5769 1 -0.90508 -1.4051 -0.40508 -2.482 0 0 0 1.0061 1 817 817 0 0 1 + 27043 23630 18111 18458 31933 31933 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3160705566406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.051 1 -0.43101 -0.93101 0.068994 -2.482 0 0 0 1.0061 1 1052 1052 0 0 1 + 27044 23630 18111 18458 31934 31934 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3170776367188 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.361 1 -0.12092 -0.62092 0.37908 -2.482 0 0 0 1.0061 1 1207 1207 0 0 1 + 27045 23630 18111 18458 31935 31935 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3163146972656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 2.9468 1 0.46481 -0.035194 0.96481 -2.482 0 0 0 1.0061 1 1500 1500 0 0 1 + 27046 23630 18111 18458 31936 31936 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3173217773438 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 3.7759 1 1.294 0.79398 1.794 -2.482 0 0 0 1.0061 1 1915 1915 0 0 1 + 27047 23630 18111 18458 31937 31937 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3156127929688 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.2318 1 1.7498 1.2498 2.2498 -2.482 0 0 0 1.0061 1 2146 2146 0 0 1 + 27048 23630 18111 18458 31938 31938 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3160095214844 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.593 1 2.1111 1.6111 2.6111 -2.482 0 0 0 1.0061 1 2332 2332 0 0 1 + 27049 23630 18111 18458 31939 31939 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3160705566406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 4.7815 1 2.2995 1.7995 2.7995 -2.482 0 0 0 1.0061 1 2426 2426 0 0 1 + 27050 23630 18111 18458 31940 31940 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3170471191406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.0734 1 2.5914 2.0914 3.0914 -2.482 0 0 0 1.0061 1 2578 2578 0 0 1 + 27051 23630 18111 18458 31941 31941 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3160705566406 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.627 1 3.145 2.645 3.645 -2.482 0 0 0 1.0061 1 2856 2856 0 0 1 + 27052 23630 18111 18458 31942 31942 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3168029785156 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 5.8118 1 3.3298 2.8298 3.8298 -2.482 0 0 0 1.0061 1 2944 2944 0 0 1 + 27053 23630 18111 18458 31943 31943 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3168334960938 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.0224 1 3.5405 3.0405 4.0405 -2.482 0 0 0 1.0061 1 3052 3052 0 0 1 + 27054 23630 18111 18458 31944 31944 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3154602050781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.5955 1 4.1135 3.6135 4.6135 -2.482 0 0 0 1.0061 1 3333 3333 0 0 1 + 27055 23630 18111 18458 31945 31945 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3170776367188 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 6.8796 1 4.3976 3.8976 4.8976 -2.482 0 0 0 1.0061 1 3477 3477 0 0 1 + 27056 23630 18111 18458 31946 31946 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3163757324219 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.4787 1 4.9967 4.4967 5.4967 -2.482 0 0 0 1.0061 1 3774 3774 0 0 1 + 27057 23630 18111 18458 31947 31947 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3165588378906 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.7191 1 5.2371 4.7371 5.7371 -2.482 0 0 0 1.0061 1 3896 3896 0 0 1 + 27058 23630 18111 18458 31948 31948 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3164367675781 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 7.9594 1 5.4775 4.9775 5.9775 -2.482 0 0 0 1.0061 1 4018 4018 0 0 1 + 27059 23630 18111 18458 31949 31949 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3157043457031 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 8.3107 1 5.8288 5.3288 6.3288 -2.482 0 0 0 1.0061 1 4193 4193 0 0 1 + 27060 23630 18111 18458 31950 31950 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3157958984375 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 8.9396 1 6.4576 5.9576 6.9576 -2.482 0 0 0 1.0061 1 4508 4508 0 0 1 + 27061 23630 18111 18458 31951 31951 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3159790039062 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 9.2133 1 6.7313 6.2313 7.2313 -2.482 0 0 0 1.0061 1 4648 4648 0 0 1 + 27062 23630 18111 18458 31952 31952 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3162231445312 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 10.894 1 8.4125 7.9125 8.9125 -2.482 0 0 0 1.0061 1 5488 5488 0 0 1 + 27063 23630 18111 18458 31953 31953 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3158874511719 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 11.204 1 8.722 8.222 9.222 -2.482 0 0 0 1.0061 1 5639 5639 0 0 1 + 27064 23630 18111 18458 31954 31954 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3153991699219 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 11.498 1 9.0165 8.5165 9.5165 -2.482 0 0 0 1.0061 1 5789 5789 0 0 1 + 27065 23630 18111 18458 31955 31955 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3163757324219 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 11.879 1 9.3966 8.8966 9.8966 -2.482 0 0 0 1.0061 1 5978 5978 0 0 1 + 27066 23630 18111 18458 31956 31956 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3166809082031 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 13.557 1 11.075 10.575 11.575 -2.482 0 0 0 1.0061 1 6870 6870 0 0 1 + 27067 23630 18111 18458 31957 31957 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3170166015625 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 13.876 1 11.373 10.873 11.873 -2.5029 0 0 0 1.0061 1 7034 7034 0 0 1 + 27068 23630 18111 18458 31958 31958 0.3054822610070005 KKKKKKVKKI 10 Unmodified _KKKKKKVKKI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20221201_MKP_PDAC_01 4 419.3172912597656 3 419.314859 1254.92275 NaN NaN NaN NaN NaN NaN NaN 14.087 1 11.584 11.084 12.084 -2.5029 0 0 0 1.0061 1 7140 7140 0 0 1 + 27069 23630 18111 18458 31959 31959 0.3054822610070005 KKKKKLHLK 9 Unmodified _KKKKKLHLK_ 0 0 0 REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56 REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.27490234375 3 384.276404 1149.80738 NaN NaN NaN NaN NaN NaN NaN 27.401 1 27.43 26.93 27.93 0.028664 0 0 0 0.86031 1 14239 14239 0.23584 0.23584 1 + 27070 29771 18112 18459 31960 31960 0.23847121969697582 KKKKKRSKAK 10 Unmodified _KKKKKRSKAK_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7;nc|ENSG00000171316|Q9P2D1-3|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3822021484375 2 615.430056 1228.84556 NaN NaN NaN NaN NaN NaN NaN 103.62 1 103.57 103.07 104.07 -0.047928 0 0 0 1.0061 1 57543 57543 0 0 1 27071 8091 18113 18460 31961 31961 0.24029007884359999 KKKKKTEL 8 Unmodified _KKKKKTEL_ 0 0 0 REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.83544921875 2 501.837134 1001.65972 NaN NaN NaN NaN NaN NaN NaN 54.403 1 53.936 53.436 54.436 -0.46664 0 0 0 0.97444 1 29479 29479 2.5775 0 1 + 27072 25518 18114 18461 31962 31962 0.15895185645024412 KKKKLHLKM 9 Unmodified _KKKKLHLKM_ 0 0 0 REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56 REV__nc|ENSG00000169871|Q9BRZ2-2|TRIM56 MSMS AL20221201_MKP_PDAC_01 4 385.259521484375 3 385.258245 1152.7529 NaN NaN NaN NaN NaN NaN NaN 105.46 1 99.285 98.785 99.785 -6.1757 0 0 0 0.86004 1 70664 70664 0.26902 0.033176 1 + 27073 29771 18115 18462 31963 31963 0.18263786826628348 KKKKLLKKSA 10 Unmodified _KKKKLLKKSA_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MSMS AL20221201_MKP_PDAC_01 4 586.4163208007812 2 586.416083 1170.81761 NaN NaN NaN NaN NaN NaN NaN 105.58 1 99.404 98.904 99.904 -6.1757 0 0 0 1.0061 1 70735 70735 0 0 1 + 27074 17601 18116 18463 31964 31964 0.23903684904280453 KKKKPHFI 8 Unmodified _KKKKPHFI_ 0 0 0 REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ REV__nc|ENSG00000126785|Q9H4E5-2|RHOJ MSMS AL20221201_MKP_PDAC_01 4 513.3349609375 2 513.334562 1024.65457 NaN NaN NaN NaN NaN NaN NaN 105.13 1 98.959 98.459 99.459 -6.1757 0 0 0 0.97444 1 70417 70417 0.79363 0.10326 1 + 27075 19559 18117 18464 31965 31965 0.14322926573095174 KKKKPKNVPAQ 11 Unmodified _KKKKPKNVPAQ_ 0 0 0 REV__nc|ENSG00000169925|Q15059-2|BRD3 REV__nc|ENSG00000169925|Q15059-2|BRD3 MSMS AL20221201_MKP_PDAC_01 4 633.4074096679688 2 633.406247 1264.79794 NaN NaN NaN NaN NaN NaN NaN 107.88 1 101.71 101.21 102.21 -6.1757 0 0 0 0.94307 1 72128 72128 0.30703 0.03801 1 + 27076 22438 18118 18465 31966 31966 0.17613308893510293 KKKKRKWLRQE 11 Unmodified _KKKKRKWLRQE_ 0 0 0 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.9923706054688 3 509.991326 1526.95215 1.3951 0.00071149 0.49564 0.00025277 1.8907 0.00096426 509.9911925666022 104.22 0.12396 98.044 97.983 98.107 -6.1757 19 7 4 0 0 0 0.7453 1 69802 69802 0 0 1 66757000 27077 9604 18119 18466 31967 31967 0.20975138378867086 KKKKRKWLRQE 11 Unmodified _KKKKRKWLRQE_ 0 0 0 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 764.4828491210938 2 764.483351 1526.95215 1.6512 0.0012623 0.02798 2.139E-05 1.6792 0.0012837 764.4830063855146 104.94 0.14661 98.762 98.67 98.816 -6.1757 33 10 4 0 0 0 0.7453 1 70214 70214 0 0 1 119660000 27078 9604 18119 18466 31968 31968 0.20975138378867086 KKKKRKWLRQE 11 Unmodified _KKKKRKWLRQE_ 0 0 0 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 MSMS AL20221201_MKP_PDAC_01 4 764.4835205078125 2 764.483351 1526.95215 NaN NaN NaN NaN NaN NaN NaN 109.73 1 103.55 103.05 104.05 -6.1757 0 0 0 0.9435 1 73263 73263 0 0 1 27079 9604 18119 18466 31969 31969 0.20975138378867086 KKKKRKWLRQE 11 Unmodified _KKKKRKWLRQE_ 0 0 0 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 ENSG00000187862|ENST00000368236|TTC24 MSMS AL20221201_MKP_PDAC_01 4 764.4845581054688 2 764.483351 1526.95215 NaN NaN NaN NaN NaN NaN NaN 109.9 1 103.72 103.22 104.22 -6.1757 0 0 0 0.9435 1 73371 73371 0 0 1 27080 9604 18119 18466 31970 31970 0.20975138378867086 KKKKRRLIPAL 11 Unmodified _KKKKRRLIPAL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.9750366210938 2 675.974631 1349.93471 NaN NaN NaN NaN NaN NaN NaN 17.082 1 17.087 16.587 17.587 0.0050564 0 0 0 0.9435 1 8600 8600 0 0 1 + 27081 18942 18120 18467 31971 31971 0.27373842843894636 KKKKRRRKQLS 11 Unmodified _KKKKRRRKQLS_ 0 0 0 REV__nc|ENSG00000160208|Q14684-2|RRP1B REV__nc|ENSG00000160208|Q14684-2|RRP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 728.4898071289062 2 728.488968 1454.96338 NaN NaN NaN NaN NaN NaN NaN 103.98 1 103.93 103.43 104.43 -0.048737 0 0 0 0.9435 1 57736 57736 0 0 1 + 27082 21523 18121 18468 31972 31972 0.2540996047302997 KKKKRYLRA 9 Unmodified _KKKKRYLRA_ 0 0 0 nc|ENSG00000133687|Q8IUR5-2|TMTC1 nc|ENSG00000133687|Q8IUR5-2|TMTC1 nc|ENSG00000133687|Q8IUR5-2|TMTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8469848632812 2 595.895849 1189.77715 -0.74353 -0.00044307 -1.261 -0.00075142 -2.0045 -0.0011945 595.8950593290583 103.61 0.15308 103.56 103.49 103.64 -0.047928 10 5 2 0 0 0 0.61381 1 57533 57533 0.52476 0.12405 1 3158300 27083 16201 18122 18469 31973 31973 0.1898476330450194 KKKKSVADQ 9 Unmodified _KKKKSVADQ_ 0 0 0 REV__AluJb_dup73373|chr10:75217950-75218104:+|1.3657585932417295|0.000524734054382|11.35|179.0|6|3|sense REV__AluJb_dup73373|chr10:75217950-75218104:+|1.3657585932417295|0.000524734054382|11.35|179.0|6|3|sense MSMS AL20221201_MKP_PDAC_01 4 516.3163452148438 2 516.314023 1030.61349 NaN NaN NaN NaN NaN NaN NaN 108.72 1 102.54 102.04 103.04 -6.1757 0 0 0 0.85852 1 72647 72647 0.45834 0.057624 1 + 27084 16708 18123 18470 31974 31974 0.09941120742928433 KKKLKSGV 8 Unmodified _KKKLKSGV_ 0 0 0 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.3067626953125 2 444.30547 886.596387 1.7118 0.00076058 0.88886 0.00039492 2.6007 0.0011555 444.3056695510571 106.64 0.082298 100.47 100.44 100.52 -6.1757 21 15 2 0 0 0 0.80992 1 71384 71384 0.69038 0 1 1436800 + 27085 17829 18124 18471 31975 31975 0.14855244927809963 KKKLKSGV 8 Unmodified _KKKLKSGV_ 0 0 0 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.3069152832031 2 444.30547 886.596387 1.7116 0.00076049 0.7816 0.00034727 2.4932 0.0011078 444.3057065672377 106.94 0.29681 100.76 100.56 100.86 -6.1757 94 54 2 0 0 0 0.80992 2 71499 71499;71607 0.69038 0 1 3426400 + 27086 17829 18124 18471 31976;31977 31976 0.14855244927809963 KKKLKSGV 8 Unmodified _KKKLKSGV_ 0 0 0 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.3062438964844 2 444.30547 886.596387 1.7117 0.00076054 0.55772 0.0002478 2.2695 0.0010083 444.30557808730856 108.48 2.2758 102.3 100.86 103.14 -6.1757 625 410 2 0 0 0 0.81007 9 72029 71713;71817;72029;72137;72240;72349;72459;72565;72671 0.6015 0 1 12439000 + 27087 17829 18124 18471 31978;31979;31980;31981;31982;31983;31984;31985;31986 31980 0.14855244927809963 KKKLKSGV 8 Unmodified _KKKLKSGV_ 0 0 0 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 REV__nc|ENSG00000089091|Q9NVP4-3|DZANK1 MSMS AL20221201_MKP_PDAC_01 4 444.3056030273438 2 444.30547 886.596387 NaN NaN NaN NaN NaN NaN NaN 109.65 1 103.47 102.97 103.97 -6.1757 0 0 0 0.97444 1 73216 73216 0 0 1 + 27088 17829 18124 18471 31987 31987 0.14855244927809963 KKKLSSLK 8 Unmodified _KKKLSSLK_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.319580078125 2 466.318577 930.622602 1.5332 0.00071497 0.80687 0.00037626 2.3401 0.0010912 466.31891783233965 106.9 0.92538 100.72 100.01 100.94 -6.1757 298 165 2 0 0 0 0.81007 1 71468 71468 0.6015 0 1 10229000 + 27089 20863 18125 18472 31988 31988 0.15451514099288488 KKKLSSLK 8 Unmodified _KKKLSSLK_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS AL20221201_MKP_PDAC_01 4 466.3206481933594 2 466.318577 930.622602 NaN NaN NaN NaN NaN NaN NaN 108.03 1 101.86 101.36 102.36 -6.1757 0 0 0 0.97444 1 72220 72220 0.6015 0 1 + 27090 20863 18125 18472 31989 31989 0.15451514099288488 KKKMFKKK 8 Unmodified _KKKMFKKK_ 0 0 0 nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENSG00000165923|ENST00000525123|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.9032592773438 3 355.90369 1064.68924 0.17141 6.1004E-05 -1.1768 -0.00041883 -1.0054 -0.00035783 355.90318819402495 54.721 0.24158 54.654 54.484 54.726 -0.066936 20 11 2 0 0 0 0.8104 1 29737 29737 0.40072 0 1 3595500 27091 7408 18126 18473 31990 31990 0.1594842638951377 KKKQKRKK 8 Unmodified _KKKQKRKK_ 0 0 0 ENSG00000152465|ENST00000378165|NMT2;ENST00000378150.1_1_10:15177331-15210611:-|nuORF ENSG00000152465|ENST00000378165|NMT2 ENSG00000152465|ENST00000378165|NMT2 MSMS AL20221201_MKP_PDAC_01 4 536.3795776367188 2 536.377292 1070.74003 NaN NaN NaN NaN NaN NaN NaN 103.16 1 96.986 96.486 97.486 -6.1757 0 0 0 0.97444 1 69187 69187 0.69038 0 1 27092 6189 18127 18474 31991 31991 0.2074909175873927 KKKRLKGHK 9 Unmodified _KKKRLKGHK_ 0 0 0 REV__ENST00000603137.1_1_2:28238673-28239105:-|nuORF REV__ENST00000603137.1_1_2:28238673-28239105:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.880859375 2 561.882742 1121.75093 NaN NaN NaN NaN NaN NaN NaN 105.09 1 105.04 104.54 105.54 -0.048737 0 0 0 0.85798 1 58325 58325 0.52476 0.12405 1 + 27093 29274 18128 18475 31992 31992 0.1949249413301004 KKKSFVVE 8 Unmodified _KKKSFVVE_ 0 0 0 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.7953186035156 2 482.794935 963.575317 -0.50147 -0.00024211 0.66975 0.00032335 0.16828 8.1246E-05 482.7953302915537 104.59 0.051201 104.54 104.5 104.55 -0.048737 7 4 2 0 0 0 0.80676 1 58077 58077 2.5775 0 1 8089300 + 27094 29682 18129 18476 31993 31993 0.09207234828284072 KKKSKKGG 8 Unmodified _KKKSKKGG_ 0 0 0 REV__ENSG00000137161|ENST00000372836|CNPY3 REV__ENSG00000137161|ENST00000372836|CNPY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 861.375244140625 1 860.567612 859.560336 -0.36698 -0.00031581 0.16268 0.00014 -0.2043 -0.00017582 860.5670105208605 103.94 0.090248 103.89 103.85 103.94 -0.048737 7 5 2 0 0 0 0.81107 2 57704 57704;57733 0 0 1 1492700 + 27095 20218 18130 18477 31994;31995 31994 0.12493787750952379 KKKSKKGGLA 10 Unmodified _KKKSKKGGLA_ 0 0 0 REV__ENSG00000137161|ENST00000372836|CNPY3 REV__ENSG00000137161|ENST00000372836|CNPY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.348388671875 2 522.848033 1043.68151 -0.6712 -0.00035094 0.51495 0.00026924 -0.15625 -8.1695E-05 522.8482938178649 103.25 0.33188 103.2 103.05 103.38 -0.047928 22 13 2 0 0 0 0.72607 2 57305 57305;57430 0 0 1 1753900 + 27096 20218 18131 18478 31996;31997 31996 0.16141990393634842 KKKSKKGGLA 10 Unmodified _KKKSKKGGLA_ 0 0 0 REV__ENSG00000137161|ENST00000372836|CNPY3 REV__ENSG00000137161|ENST00000372836|CNPY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.348388671875 2 522.848033 1043.68151 -0.6712 -0.00035094 0.51495 0.00026924 -0.15625 -8.1695E-05 522.8482938178649 103.25 0.33188 103.2 103.05 103.38 -0.047928 22 13 2 0 0 0 0.24012 1 57305 57305 0 0 1 1753900 + 27097 20218 18131 18478 31998 31998 0.16141990393634842 KKKTKRLYINK 11 Unmodified _KKKTKRLYINK_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 710.4620971679688 2 710.461553 1418.90855 NaN NaN NaN NaN NaN NaN NaN 69.467 1 69.498 68.998 69.998 0.030914 0 0 0 0.9435 1 38188 38188 0 0 1 27098 1607 18132 18479 31999 31999 0.2158552888174654 KKKTVRIV 8 Unmodified _KKKTVRIV_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20221201_MKP_PDAC_01 4 486.3425903320312 2 486.339844 970.665135 NaN NaN NaN NaN NaN NaN NaN 109.89 1 103.71 103.21 104.21 -6.1757 0 0 0 0.97444 1 73362 73362 2.0598 1.2661 1 + 27099 19067 18133 18480 32000 32000 0.1786290922751732 KKLKALGKILI 11 Unmodified _KKLKALGKILI_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.9435424804688 2 612.941934 1223.86931 NaN NaN NaN NaN NaN NaN NaN 12.721 1 12.731 12.231 13.231 0.0096512 0 0 0 0.9435 1 6272 6272 0 0 1 + 27100 19800 18134 18481 32001 32001 0.266334285981884 KKLKPCYLKA 10 Unmodified _KKLKPCYLKA_ 0 0 0 ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8698120117188 2 596.367744 1190.72094 0.054007 3.2208E-05 1.2632 0.00075331 1.3172 0.00078552 596.368701190636 97.293 0.42109 97.293 97.085 97.506 0 33 21 2 0 0 0 0.72247 1 53711 53711 0.40072 0.050084 1 2151700 27101 13189 18135 18482 32002 32002 0.13320374352792896 KKLLKVIKKS 10 Unmodified _KKLLKVIKKS_ 0 0 0 REV__ENSG00000159086|ENST00000331923|PAXBP1 REV__ENSG00000159086|ENST00000331923|PAXBP1 MSMS AL20221201_MKP_PDAC_01 4 592.9264526367188 2 592.926283 1183.83801 NaN NaN NaN NaN NaN NaN NaN 105.7 1 99.522 99.022 100.02 -6.1757 0 0 0 1.0024 1 70803 70803 0.40072 0 1 + 27102 21458 18136 18483 32003 32003 0.2534485556409436 KKLLRKELKKN 11 Unmodified _KKLLRKELKKN_ 0 0 0 REV__nc|ENSG00000135148|O14545-2|TRAFD1 REV__nc|ENSG00000135148|O14545-2|TRAFD1 MSMS AL20221201_MKP_PDAC_01 4 699.4690551757812 2 699.469378 1396.9242 NaN NaN NaN NaN NaN NaN NaN 103.79 1 97.618 97.118 98.118 -6.1757 0 0 0 0.94307 1 69561 69561 0.30703 0 1 + 27103 20041 18137 18484 32004 32004 0.2416181539877016 KKLQFEREVLF 11 Unmodified _KKLQFEREVLF_ 0 0 0 ENSG00000151692|ENST00000320892|RNF144A ENSG00000151692|ENST00000320892|RNF144A ENSG00000151692|ENST00000320892|RNF144A MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.6139221191406 3 479.613522 1435.81874 1.2562 0.00060251 0.048523 2.3272E-05 1.3048 0.00062578 479.61354314032974 86.316 0.5084 80.141 79.794 80.303 -6.1757 53 27 2 0 0 0 0.69509 1 56711 56711 4.7159 1.6437 1 22865000 27104 6138 18138 18485 32005 32005 0.11825854482503928 KKLQLSEFF 9 Unmodified _KKLQLSEFF_ 0 0 0 ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000085788|ENST00000397166|DDHD2 ENSG00000085788|ENST00000397166|DDHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5540771484375 3 380.553492 1138.63865 1.4839 0.00056469 -0.037129 -1.413E-05 1.4467 0.00055056 380.55348013866166 30.802 0.38863 27.305 27.132 27.52 -3.497 44 17 3 0 0 0 0.41742 1 17456 17456 7.609 0 1 109180000 27105 1418 18139 18486 32006 32006 0.07487175545520586 KKLRTETKM 9 Unmodified _KKLRTETKM_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS AL20221201_MKP_PDAC_01 4 378.8599853515625 3 378.893631 1133.65906 NaN NaN NaN NaN NaN NaN NaN 22.323 1 19.588 19.088 20.088 -2.7348 0 0 0 0.85447 1 12001 12001 0.96228 0 1 + 27106 22279 18140 18487 32007 32007 0.097580229336927 KKLSNAPR 8 Unmodified _KKLSNAPR_ 0 0 0 TP53BP2-CAPN2|1|fusion;TP53BP2-CAPN2|2|fusion;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2 TP53BP2-CAPN2|1|fusion TP53BP2-CAPN2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2838745117188 2 457.282526 912.550499 2.0551 0.00093977 -0.018547 -8.4813E-06 2.0366 0.00093129 457.28243858521586 93.316 0.39093 93.339 93.104 93.494 0.022987 30 14 3 0 0 0 0.80992 1 51881 51881 0.69038 0 1 2840400 27107 30197 18141 18488 32008 32008 0.09072599745547905 KKLVMKKLL 9 Unmodified _KKLVMKKLL_ 0 0 0 REV__ENSG00000119906|ENST00000238961|SLF2 REV__ENSG00000119906|ENST00000238961|SLF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8829345703125 2 550.88303 1099.75151 NaN NaN NaN NaN NaN NaN NaN 75.035 1 74.557 74.057 75.057 -0.47714 0 0 0 0.85737 1 41069 41069 0.6015 0 1 + 27108 19216 18142 18489 32009 32009 0.20562152737875294 KKMGIKSG 8 Unmodified _KKMGIKSG_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;ENSG00000164796|ENST00000297405|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7555541992188 2 424.754756 847.494958 0.26831 0.00011397 1.6784 0.00071291 1.9467 0.00082687 424.75524605966604 27.359 0.33368 27.387 27.284 27.618 0.028664 31 14 3 0 0 0 0.80992 1 14205 14205 0.69038 0 1 14984000 27109 7246 18143 18490 32010 32010 0.06511050233598326 KKMKPPKIPF 10 Unmodified _KKMKPPKIPF_ 0 0 0 ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2555541992188 3 405.2545 1212.74167 NaN NaN NaN NaN NaN NaN NaN 36.172 1 35.922 35.422 36.422 -0.2497 0 0 0 0.94046 1 18969 18969 6.1918 3.4567 1 27110 4801 18144 18491 32011 32011 0.14380964732481516 KKNDRVEKL 9 Unmodified _KKNDRVEKL_ 0 0 0 REV__ENSG00000198887|ENST00000361138|SMC5 REV__ENSG00000198887|ENST00000361138|SMC5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.5627136230469 3 377.227779 1128.66151 0.75661 0.00028541 1.006 0.00037947 1.7626 0.00066489 377.22824402991904 22.847 0.32993 20.069 19.887 20.217 -2.7784 52 24 3 0 0 0 0.18428 1 12251 12251 10.151 0 1 21081000 + 27111 24092 18145 18492 32012 32012 0.10232194662989968 KKNKKKFL 8 Unmodified _KKNKKKFL_ 0 0 0 REV__ENSG00000067715|ENST00000261205|SYT1 REV__ENSG00000067715|ENST00000261205|SYT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8114013671875 2 517.347669 1032.68079 NaN NaN NaN NaN NaN NaN NaN 100.59 1 100.55 100.05 101.05 -0.04216 0 0 0 0.97444 1 55877 55877 2.5775 0 1 + 27112 17424 18146 18493 32013 32013 0.1657519574455364 KKNLLCHL 8 Unmodified _KKNLLCHL_ 0 0 0 REV__nc|ENSG00000123146|P48960-2|ADGRE5 REV__nc|ENSG00000123146|P48960-2|ADGRE5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7873229980469 2 484.78913 967.563706 1.417 0.00068694 -0.1944 -9.4241E-05 1.2226 0.0005927 484.7888298528697 41.627 0.34063 37.02 36.879 37.22 -4.6079 46 21 3 0 0 0 0.80232 1 25007 25007 5.2307 0 1 14623000 + 27113 19373 18147 18494 32014 32014 0.07862714533291637 KKNWRRRKRR 10 Unmodified _KKNWRRRKRR_ 0 0 0 nc|ENSG00000137309|P17096-3|HMGA1 nc|ENSG00000137309|P17096-3|HMGA1 nc|ENSG00000137309|P17096-3|HMGA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 742.972900390625 2 742.468901 1482.92325 1.5142 0.0011243 1.2994 0.00096478 2.8137 0.0020891 742.4697162286159 104.23 0.10545 98.053 97.983 98.088 -6.1757 15 6 4 0 0 0 0.72482 1 69815 69815 0.40072 0.1317 1 27866000 27114 16218 18148 18495 32015 32015 0.20110458593057956 KKPKLRNFRRP 11 Unmodified _KKPKLRNFRRP_ 0 0 0 ENST00000549009.1_1_12:110574622-110600787:+|nuORF ENST00000549009.1_1_12:110574622-110600787:+|nuORF ENST00000549009.1_1_12:110574622-110600787:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.9756774902344 3 480.640516 1438.89972 1.6766 0.00080585 -0.24925 -0.0001198 1.4274 0.00068604 480.6401844874202 104.98 0.16997 98.799 98.705 98.875 -6.1757 37 12 4 0 0 0 0.74429 1 70236 70236 0.094841 0 1 285100000 27115 15143 18149 18496 32016 32016 0.19782600035910036 KKPLKLGPIKK 11 Unmodified _KKPLKLGPIKK_ 0 0 0 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 ENSG00000104332|ENST00000220772|SFRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1249.862548828125 1 1249.87184 1248.86456 -0.34007 -0.00042504 -3.8662 -0.0048323 -4.2063 -0.0052573 1249.8660358657407 44.557 0.5464 44.241 44.141 44.687 -0.31585 42 30 2 0 0 0 0.7453 1 23943 23943 0 0 1 30575000 27116 2195 18150 18497 32017 32017 0.25008544455363335 KKPPVIRQ 8 Unmodified _KKPPVIRQ_ 0 0 0 ENST00000472871.1_1_13:95120883-95131509:-|nuORF;ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT ENST00000472871.1_1_13:95120883-95131509:-|nuORF ENST00000472871.1_1_13:95120883-95131509:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.1626892089844 2 483.316369 964.618185 NaN NaN NaN NaN NaN NaN NaN 102.86 1 102.82 102.32 103.32 -0.047928 0 0 0 0.97444 1 57129 57129 0.69038 0 1 27117 1292 18151 18498 32018 32018 0.1344604967637224 KKPRMWTL 8 Unmodified _KKPRMWTL_ 0 0 0 REV__ENSG00000137642|ENST00000260197|SORL1 REV__ENSG00000137642|ENST00000260197|SORL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8772583007812 3 353.875912 1058.60591 NaN NaN NaN NaN NaN NaN NaN 16.39 1 16.39 15.89 16.89 0 0 0 0 0.97444 1 7988 7988 0.40072 0.1317 1 + 27118 20256 18152 18499 32019 32019 0.07894689941690558 KKQELLIR 8 Unmodified _KKQELLIR_ 0 0 0 REV__ENSG00000060558|ENST00000262958|GNA15 REV__ENSG00000060558|ENST00000262958|GNA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3348999023438 2 514.334759 1026.65496 -0.40657 -0.00020911 0.641 0.00032969 0.23443 0.00012057 514.3352466625361 103.26 0.44672 103.21 102.98 103.43 -0.04792 36 18 3 0 0 0 0.80992 1 57294 57294 0.69038 0 1 2248300 + 27119 17326 18153 18500 32020 32020 0.14270301502278926 KKQQQIEIK 9 Unmodified _KKQQQIEIK_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5677795410156 3 381.567912 1141.68191 0.088904 3.3923E-05 0.28948 0.00011046 0.37839 0.00014438 381.56796381402086 20.155 0.14569 20.166 20.09 20.236 0.010551 14 7 2 0 0 0 0.54213 1 10285 10285 4.897 1.31 1 644990 27120 8125 18154 18501 32021 32021 0.11673365322781137 KKQRRKKLT 9 Unmodified _KKQRRKKLT_ 0 0 0 nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 MSMS AL20221201_MKP_PDAC_01 4 593.3994140625 2 593.398756 1184.78296 NaN NaN NaN NaN NaN NaN NaN 104.44 1 98.263 97.763 98.763 -6.1757 0 0 0 0.85798 1 69941 69941 0.52476 0.12405 1 27121 4706 18155 18502 32022 32022 0.19795861816169236 KKQRRKTTA 9 Unmodified _KKQRRKTTA_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.3502197265625 2 558.851638 1115.68872 1.7256 0.00096435 0.29883 0.000167 2.0244 0.0011313 558.8517927643461 106.84 0.31779 100.67 100.54 100.86 -6.1757 107 58 2 0 0 0 0.21906 1 71604 71604 0.52476 0.52476 1 3722500 27122 3966 18156 18503 32023 32023 0.1355072299402309 KKQSVQKEWKK 11 Unmodified _KKQSVQKEWKK_ 0 0 0 REV__ENSG00000138755|ENST00000264888|CXCL9 REV__ENSG00000138755|ENST00000264888|CXCL9 MSMS AL20221201_MKP_PDAC_01 4 472.6172485351562 3 472.948904 1415.82488 NaN NaN NaN NaN NaN NaN NaN 109.37 1 103.2 102.7 103.7 -6.1757 0 0 0 0.94313 1 73046 73046 0.073264 0 1 + 27123 20359 18157 18504 32024 32024 0.13360372714009827 KKRALEMW 8 Unmodified _KKRALEMW_ 0 0 0 REV__ENSG00000196872|ENST00000397899|CRACDL REV__ENSG00000196872|ENST00000397899|CRACDL MSMS AL20221201_MKP_PDAC_01 4 354.1931457519531 3 354.535667 1060.58517 NaN NaN NaN NaN NaN NaN NaN 0.182 1 -2.3 -2.8 -1.8 -2.482 0 0 0 0.97444 1 99 99 0.45834 0 1 + 27124 23878 18158 18505 32025 32025 0.05730099561992574 KKRATAGK 8 Unmodified _KKRATAGK_ 0 0 0 REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2776184082031 2 430.277244 858.539935 1.2829 0.00055198 0.45425 0.00019545 1.7371 0.00074744 430.27735335801833 94.354 1.3022 88.179 87.57 88.872 -6.1757 121 75 2 0 0 0 0.80232 1 62301 62301 5.2307 0 1 24469000 + 27125 27034 18159 18506 32026 32026 0.1050061709113379 KKRATAGK 8 Unmodified _KKRATAGK_ 0 0 0 REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2778625488281 2 430.277244 858.539935 NaN NaN NaN NaN NaN NaN NaN 93.106 1 86.93 86.43 87.43 -6.1757 0 0 0 0.97444 1 61608 61608 2.3027 0 1 + 27126 27034 18159 18506 32027 32027 0.1050061709113379 KKRATAGK 8 Unmodified _KKRATAGK_ 0 0 0 REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF REV__ENST00000436545.5_1_17:41116178-41116429:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2777099609375 2 430.277244 858.539935 NaN NaN NaN NaN NaN NaN NaN 93.287 1 87.111 86.611 87.611 -6.1757 0 0 0 0.97444 1 61737 61737 5.2307 0 1 + 27127 27034 18159 18506 32028 32028 0.1050061709113379 KKRKKSKSR 9 Unmodified _KKRKKSKSR_ 0 0 0 nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;nc|ENSG00000131051|Q14498-2|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.3851318359375 2 573.383106 1144.75166 NaN NaN NaN NaN NaN NaN NaN 96.92 1 96.92 96.42 97.42 0 0 0 0 0.85852 1 53557 53557 0.45834 0 1 27128 4293 18160 18507 32029 32029 0.18507288782075193 KKRKRKLRRH 10 Unmodified _KKRKRKLRRH_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.4754638671875 2 703.476195 1404.93784 NaN NaN NaN NaN NaN NaN NaN 14.79 1 14.796 14.296 15.296 0.0057774 0 0 0 1.0061 1 7348 7348 0 0 1 + 27129 19740 18161 18508 32030 32030 0.25156530741219285 KKRKRRKKKRG 11 Unmodified _KKRKRRKKKRG_ 0 0 0 REV__ENSG00000128602|ENST00000249373|SMO REV__ENSG00000128602|ENST00000249373|SMO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 735.0120239257812 2 735.010402 1468.00625 NaN NaN NaN NaN NaN NaN NaN 62.469 1 62.469 61.969 62.969 0 0 0 0 0.9435 1 34844 34844 0 0 1 + 27130 19623 18162 18509 32031 32031 0.2909677532106798 KKRKRRKKKRG 11 Unmodified _KKRKRRKKKRG_ 0 0 0 REV__ENSG00000128602|ENST00000249373|SMO REV__ENSG00000128602|ENST00000249373|SMO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 735.0120849609375 2 735.010402 1468.00625 NaN NaN NaN NaN NaN NaN NaN 89.749 1 89.749 89.249 90.249 0 0 0 0 0.9435 1 49657 49657 0 0 1 + 27131 19623 18162 18509 32032 32032 0.2909677532106798 KKRKRRVYKVR 11 Unmodified _KKRKRRVYKVR_ 0 0 0 ENST00000348579.6_1_16:67428515-67429028:-|nuORF;ENSG00000159714|ENST00000565726|ZDHHC1 ENST00000348579.6_1_16:67428515-67429028:-|nuORF ENST00000348579.6_1_16:67428515-67429028:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 759.0053100585938 2 759.004785 1515.99502 NaN NaN NaN NaN NaN NaN NaN 56.511 1 56.442 55.942 56.942 -0.068737 0 0 0 0.9435 1 30743 30743 0 0 1 27132 12041 18163 18510 32033 32033 0.25765953226959937 KKRLLRQTF 9 Unmodified _KKRLLRQTF_ 0 0 0 REV__ENST00000564314.5_3_16:24549118-24549208:+|nuORF REV__ENST00000564314.5_3_16:24549118-24549208:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3804931640625 2 595.380032 1188.74551 1.2022 0.0007158 -1.6372 -0.00097474 -0.43493 -0.00025895 595.3789468728031 103.24 0.089348 97.068 97.019 97.108 -6.1757 40 26 2 0 0 0 0.59218 1 69228 69228 1.8442 0.36234 1 6031200 + 27133 28895 18164 18511 32034 32034 0.1586877055055993 KKRRKKRIFNL 11 Unmodified _KKRRKKRIFNL_ 0 0 0 ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2 ENST00000380121.7_1_13:33010521-33020605:-|nuORF ENST00000380121.7_1_13:33010521-33020605:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.9965209960938 2 743.993886 1485.97322 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.78 103.28 104.28 -0.048737 0 0 0 0.9435 1 57658 57658 0 0 1 27134 12590 18165 18512 32035 32035 0.24967148478413037 KKRRRRRKLQH 11 Unmodified _KKRRRRRKLQH_ 0 0 0 REV__ENST00000474534.1_1_9:131798902-131809484:+|nuORF REV__ENST00000474534.1_1_9:131798902-131809484:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 781.511962890625 2 781.508558 1561.00256 NaN NaN NaN NaN NaN NaN NaN 109.97 1 103.79 103.29 104.29 -6.1757 0 0 0 0.9435 1 73413 73413 0 0 1 + 27135 20942 18166 18513 32036 32036 0.24450105547248313 KKRRWRKKRRK 11 Unmodified _KKRRWRKKRRK_ 0 0 0 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 nc|ENSG00000290320|P0DW85|H2BN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.541748046875 2 813.5424 1625.07025 NaN NaN NaN NaN NaN NaN NaN 104.57 1 104.52 104.02 105.02 -0.048737 0 0 0 0.9435 1 58060 58060 0 0 1 27136 16631 18167 18514 32037 32037 0.28271555477999755 KKRSTQFY 8 Unmodified _KKRSTQFY_ 0 0 0 REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.746826171875 2 529.293091 1056.57163 NaN NaN NaN NaN NaN NaN NaN 23.589 1 23.589 23.089 24.089 0 0 0 0 0.97444 1 12028 12028 2.5775 0.51773 1 + 27137 30038 18168 18515 32038 32038 0.04560565054430299 KKRVVLFSP 9 Unmodified _KKRVVLFSP_ 0 0 0 nc|ENSG00000162971|A2RUC4-2|TYW5;ENST00000452512.6_1_2:200797792-200820219:-|nuORF;ENSG00000162971|ENST00000354611|TYW5 nc|ENSG00000162971|A2RUC4-2|TYW5 nc|ENSG00000162971|A2RUC4-2|TYW5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3461303710938 2 537.345126 1072.6757 1.4721 0.00079102 -1.0993 -0.00059069 0.37282 0.00020033 537.3446169536599 106.06 0.70796 99.881 99.59 100.3 -6.1757 159 99 2 0 0 0 0.61381 1 70879 70879 0.52476 0.52476 1 7603200 27138 6935 18169 18516 32039 32039 0.14226891881935444 KKRYRKRKNKL 11 Unmodified _KKRYRKRKNKL_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.6676635742188 3 506.666954 1516.97903 1.5088 0.00076446 0.19348 9.8028E-05 1.7023 0.00086249 506.6669813749626 109.66 0.24851 103.48 103.36 103.61 -6.1757 72 54 2 0 0 0 0.7453 2 73186 73186;73192 0 0 1 3272700 27139 778 18170 18517 32040;32041 32040 0.24122246990054919 KKSFCFYAY 9 Unmodified _KKSFCFYAY_ 0 0 0 REV__ENST00000477909.5_1_3:101500888-101500975:+|nuORF REV__ENST00000477909.5_1_3:101500888-101500975:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7803344726562 2 578.778428 1155.5423 NaN NaN NaN NaN NaN NaN NaN 29.514 1 29.514 29.014 30.014 0 0 0 0 0.82015 1 15291 15291 5.2307 0 1 + 27140 27619 18171 18518 32042 32042 -0.02924715286076207 KKSFCLRT 8 Unmodified _KKSFCLRT_ 0 0 0 REV__ENST00000548126.1_1_12:82750927-82752540:-|nuORF REV__ENST00000548126.1_1_12:82750927-82752540:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7795715332031 2 491.778762 981.542971 0.73188 0.00035992 -0.59584 -0.00029302 0.13604 6.6904E-05 491.7784655325103 71.99 0.23076 71.514 71.341 71.572 -0.47609 13 8 2 0 0 0 0.80383 1 39375 39375 4.3292 0 1 961350 + 27141 28681 18172 18519 32043 32043 0.05146124153634446 KKSFHCDICD 10 Unmodified _KKSFHCDICD_ 0 0 0 nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64 nc|ENSG00000020256|Q9NTW7-6|ZFP64 nc|ENSG00000020256|Q9NTW7-6|ZFP64 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.265380859375 2 598.265358 1194.51616 NaN NaN NaN NaN NaN NaN NaN 15.004 1 14.99 14.49 15.49 -0.014067 0 0 0 1.0024 1 7338 7338 0.40072 0 1 27142 521 18173 18520 32044 32044 -0.0733135251987278 KKSKFLKKKL 10 Unmodified _KKSKFLKKKL_ 0 0 0 REV__ENST00000400566.5_1_21:15858393-15870825:-|nuORF REV__ENST00000400566.5_1_21:15858393-15870825:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.4312744140625 2 624.431733 1246.84891 0.54585 0.00034085 0.02168 1.3538E-05 0.56753 0.00035438 624.4316748376259 84.24 0.38619 78.064 77.856 78.242 -6.1757 35 21 2 0 0 0 0.72196 1 55452 55452 0.45834 0 1 22813000 + 27143 26598 18174 18521 32045 32045 0.2353625793834908 KKSKKSLI 8 Unmodified _KKSKKSLI_ 0 0 0 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.3199462890625 2 466.318577 930.622602 1.5332 0.00071497 0.80687 0.00037626 2.3401 0.0010912 466.31891783233965 106.9 0.92538 100.72 100.01 100.94 -6.1757 298 165 2 0 0 0 0.80975 1 71361 71361 0.79363 0.79363 1 10229000 27144 8842 18175 18522 32046 32046 0.1545151409927712 KKSKKSLI 8 Unmodified _KKSKKSLI_ 0 0 0 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.3197326660156 2 466.318577 930.622602 1.5326 0.00071468 0.50577 0.00023585 2.0384 0.00095053 466.31879790010237 107.57 0.60986 101.4 100.94 101.55 -6.1757 181 101 3 0 0 0 0.80975 2 71681 71681;71789 0.79363 0.79363 1 7909200 27145 8842 18175 18522 32047;32048 32047 0.1545151409927712 KKSPLLDAHV 10 Unmodified _KKSPLLDAHV_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3294067382812 2 554.329673 1106.64479 -0.46505 -0.00025779 0.18623 0.00010323 -0.27882 -0.00015456 554.3296936585559 103.53 0.069153 103.48 103.45 103.52 -0.047928 4 2 2 0 0 0 0.71276 1 57512 57512 1.4819 0 1 20165000 + 27146 20455;29663 18176 18523 32049 32049 0.09573693777042536 KKSPLLDAHV 10 Unmodified _KKSPLLDAHV_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.329673 1106.64479 -0.46505 -0.00025779 0.18623 0.00010323 -0.27882 -0.00015456 554.3296936585559 103.53 0.069153 103.48 103.45 103.52 -0.047928 0 0 NaN 1.4819 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 20165000 + 27147 20455;29663 18176 18523 0.09573693777042536 KKSSKKKKK 9 Unmodified _KKSSKKKKK_ 0 0 0 REV__ENSG00000139767|ENST00000267260|SRRM4 REV__ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3773193359375 2 545.376958 1088.73936 NaN NaN NaN NaN NaN NaN NaN 103.81 1 103.76 103.26 104.26 -0.048737 0 0 0 0.8622 1 57646 57646 0 0 1 + 27148 20431 18177 18524 32050 32050 0.1985425231903264 KKSSKLLK 8 Unmodified _KKSSKLLK_ 0 0 0 REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.3195495605469 2 466.318577 930.622602 1.5332 0.00071497 0.80687 0.00037626 2.3401 0.0010912 466.31891783233965 106.9 0.92538 100.72 100.01 100.94 -6.1757 298 165 2 0 0 0 0.81107 3 71144 71144;71252;71576 0 0 1 10229000 + 27149 25521 18178 18525 32051;32052;32053 32051 0.15451514099288488 KKSSKLLK 8 Unmodified _KKSSKLLK_ 0 0 0 REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.3197937011719 2 466.318577 930.622602 1.5326 0.00071468 0.50577 0.00023585 2.0384 0.00095053 466.31879790010237 107.57 0.60986 101.4 100.94 101.55 -6.1757 181 101 3 0 0 0 0.81107 2 71899 71899;72008 0 0 1 7909200 + 27150 25521 18178 18525 32054;32055 32054 0.15451514099288488 KKSSKLLK 8 Unmodified _KKSSKLLK_ 0 0 0 REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.3197937011719 2 466.318577 930.622602 NaN NaN NaN NaN NaN NaN NaN 108.21 1 102.03 101.53 102.53 -6.1757 0 0 0 0.97444 1 72329 72329 0 0 1 + 27151 25521 18178 18525 32056 32056 0.15451514099288488 KKSSKLLK 8 Unmodified _KKSSKLLK_ 0 0 0 REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF REV__ENST00000322349.12_1_12:93226388-93226439:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.3189392089844 2 466.318577 930.622602 NaN NaN NaN NaN NaN NaN NaN 108.74 1 102.57 102.07 103.07 -6.1757 0 0 0 0.97444 1 72663 72663 0 0 1 + 27152 25521 18178 18525 32057 32057 0.15451514099288488 KKSSSKGS 8 Unmodified _KKSSSKGS_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1898193359375 2 404.729792 807.445031 0.67724 0.0002741 0.032515 1.316E-05 0.70976 0.00028726 404.7300153046132 68 0.29466 67.518 67.299 67.594 -0.48218 21 13 2 0 0 0 8.7369 1 37128 37128 0 0 1 2591000 27153 4209 18179 18526 32058 32058 0.033606388293037526 KKSSSKGS 8 Unmodified _KKSSSKGS_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 404.729792 807.445031 0.18916 7.6558E-05 0.53534 0.00021667 0.72449 0.00029322 404.7302769289937 67.55 0.19244 67.55 67.39 67.583 0 0.016175 0.00015188 NaN 0 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1404600 27154 4209 18179 18526 0.033606388293037526 KKTKLYKSF 9 Unmodified _KKTKLYKSF_ 0 0 0 REV__CHML|p.E324K|1|0.04|ENSG00000203668|chr1:241634797-241634797|C/T|missense_variant REV__CHML|p.E324K|1|0.04|ENSG00000203668|chr1:241634797-241634797|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 381.5684814453125 3 381.569253 1141.68593 NaN NaN NaN NaN NaN NaN NaN 20.048 1 17.392 16.892 17.892 -2.6564 0 0 0 0.82852 1 10661 10661 4.1895 0.60244 1 + 27155 16767 18180 18527 32059 32059 0.12075454816499587 KKTMKTGF 8 Unmodified _KKTMKTGF_ 0 0 0 nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3;nc|ENSG00000100167|Q9UH03-3|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7677307128906 2 470.767863 939.521173 0.52548 0.00024738 3.3605 0.001582 3.886 0.0018294 470.7691495153984 67.021 0.54518 67.039 66.713 67.258 0.018028 63 26 3 0 0 0 0.75262 1 36783 36783 12.532 1.4171 1 11218000 27156 1764 18181 18528 32060 32060 0.04899319405069491 KKTSRGKKRL 10 Unmodified _KKTSRGKKRL_ 0 0 0 nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.3975830078125 2 601.396213 1200.77787 NaN NaN NaN NaN NaN NaN NaN 104.69 1 104.64 104.14 105.14 -0.048737 0 0 0 0.99248 1 58126 58126 1.4819 0 1 27157 6887 18182 18529 32061 32061 0.18551557953560405 KKVHKPIKN 9 Unmodified _KKVHKPIKN_ 0 0 0 REV__ENSG00000124784|ENST00000379834|RIOK1 REV__ENSG00000124784|ENST00000379834|RIOK1 MSMS AL20221201_MKP_PDAC_01 4 546.357421875 2 546.356025 1090.6975 NaN NaN NaN NaN NaN NaN NaN 107.09 1 100.91 100.41 101.41 -6.1757 0 0 0 0.85798 1 71648 71648 0.52476 0.12405 1 + 27158 19470 18183 18530 32062 32062 0.15577696630498394 KKVKGFLVKF 10 Unmodified _KKVKGFLVKF_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MSMS AL20221201_MKP_PDAC_01 4 597.3895263671875 2 597.392077 1192.7696 NaN NaN NaN NaN NaN NaN NaN 108.24 1 102.07 101.57 102.57 -6.1757 0 0 0 1.0024 1 72352 72352 0.40072 0.093686 1 + 27159 19938 18184 18531 32063 32063 0.18092610984217572 KKVKGGVVKSD 11 Unmodified _KKVKGGVVKSD_ 0 0 0 REV__ENSG00000111269|ENST00000228865|CREBL2 REV__ENSG00000111269|ENST00000228865|CREBL2 MSMS AL20221201_MKP_PDAC_01 4 382.237548828125 3 382.239796 1143.69756 NaN NaN NaN NaN NaN NaN NaN 40.616 1 36.087 35.587 36.587 -4.5294 0 0 0 0.92939 1 24277 24277 5.8681 0.97113 1 + 27160 18743 18185 18532 32064 32064 0.13145651839863604 KKVKKKKKK 9 Unmodified _KKVKKKKKK_ 0 0 0 ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.2630004882812 2 571.926618 1141.83868 NaN NaN NaN NaN NaN NaN NaN 14.622 1 14.629 14.129 15.129 0.0073986 0 0 0 0.8622 1 7255 7255 0 0 1 27161 9549 18186 18533 32065 32065 0.27343695003787616 KKVKKKKKKK 10 Unmodified _KKVKKKKKKK_ 0 0 0 ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.3179931640625 3 424.318492 1269.93365 NaN NaN NaN NaN NaN NaN NaN 64.23 1 63.745 63.245 64.245 -0.48512 0 0 0 1.0061 1 35043 35043 0 0 1 27162 9549 18187 18534 32066 32066 0.309476284749735 KKVLIKYVTFK 11 Unmodified _KKVLIKYVTFK_ 0 0 0 REV__ENSG00000104497|ENST00000345957|SNX16 REV__ENSG00000104497|ENST00000345957|SNX16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2983093261719 3 456.298874 1365.87479 NaN NaN NaN NaN NaN NaN NaN 103.46 1 103.46 102.96 103.96 0 0 0 0 0.94337 1 57034 57034 0.094841 0.011491 1 + 27163 18360 18188 18535 32067 32067 0.20649107389954224 KKWMILCIL 9 Unmodified _KKWMILCIL_ 0 0 0 REV__ENST00000328090.9_2_10:5784070-5784100:+|nuORF REV__ENST00000328090.9_2_10:5784070-5784100:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3399047851562 2 574.340141 1146.66573 0.25375 0.00014574 -1.3433 -0.00077153 -1.0896 -0.00062579 574.3393730077419 100.92 0.2407 100.88 100.68 100.92 -0.04216 13 8 3 0 0 0 0.61256 1 56069 56069 0.6015 0 1 4391100 + 27164 25577 18189 18536 32068 32068 0.09826244560690611 KKYLLLLLGGF 11 Unmodified _KKYLLLLLGGF_ 0 0 0 nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;ENST00000486313.1_1_7:91731925-91739478:+|nuORF;ENST00000487258.5_1_7:91722364-91739470:+|nuORF nc|ENSG00000127914|Q99996-5|AKAP9 nc|ENSG00000127914|Q99996-5|AKAP9 MSMS AL20221201_MKP_PDAC_01 4 632.9041748046875 2 632.905017 1263.79548 NaN NaN NaN NaN NaN NaN NaN 106.95 1 100.77 100.27 101.27 -6.1757 0 0 0 0.94301 1 71562 71562 0.35063 0 1 27165 4032 18190 18537 32069 32069 0.17413460435841444 KKYLTRMIK 9 Unmodified _KKYLTRMIK_ 0 0 0 REV__ENSG00000135355|ENST00000369352|GJA10 REV__ENSG00000135355|ENST00000369352|GJA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2467041015625 3 394.246005 1179.71618 2.591 0.0010215 -1.405 -0.0005539 1.186 0.00046758 394.24547249461136 97.048 0.40257 97.041 96.853 97.255 -0.007019 29 15 3 0 0 0 0.61381 1 53908 53908 0.23584 0.095952 1 17647000 + 27166 20056 18191 18538 32070 32070 0.1335149021003872 KKYVCKLLF 9 Unmodified _KKYVCKLLF_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000600199.1_1_19:50270291-50299453:+|nuORF;nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000183020|O94973-3|AP2A2 ENSG00000196961|ENST00000354293|AP2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.2317810058594 3 381.231584 1140.67292 1.599 0.00060961 -0.69034 -0.00026318 0.90871 0.00034643 381.231142073445 88.443 0.38074 82.267 82.06 82.441 -6.1757 51 20 3 0 0 0 0.18144 2 58282 58282;58424 24.991 5.629 1 16013000 27167 9890;9108 18192 18539 32071;32072 32071 0.10821300432758107 KKYVKLRF 8 Unmodified _KKYVKLRF_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2339172363281 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 52.998 1 52.934 52.434 53.434 -0.063423 0 0 0 0.97444 1 28728 28728 1.6526 0.45928 1 27168 3196 18193 18540 32073 32073 0.14367195744557648 KLAAAISEV 9 Unmodified _KLAAAISEV_ 0 0 0 nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST nc|ENSG00000153113|P20810-3|CAST nc|ENSG00000153113|P20810-3|CAST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.271240234375 2 451.271293 900.528032 0.34805 0.00015706 0.022787 1.0283E-05 0.37083 0.00016735 451.2712981976761 40.019 0.25735 40.019 39.853 40.11 0 31 12 3 0 0 0 0.044011 1 21444 21444 47.749 13.646 1 13365000 27169 6240 18194 18541 32074 32074 0.07378955557271638 KLAAAISEV 9 Unmodified _KLAAAISEV_ 0 0 0 nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST nc|ENSG00000153113|P20810-3|CAST nc|ENSG00000153113|P20810-3|CAST MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2715759277344 2 451.271293 900.528032 0.69664 0.00031437 -0.1401 -6.3223E-05 0.55654 0.00025115 451.2712176034074 45.495 0.44098 40.54 40.348 40.789 -4.9549 50 29 2 0 0 0 0.044011 2 27981 27831;27981 47.749 13.646 1 28251000 27170 6240 18194 18541 32075;32076 32076 0.07378955557271638 KLAAEDFRL 9 Unmodified _KLAAEDFRL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__Q9D312 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8002319335938 2 531.800749 1061.58694 0.53201 0.00028292 -0.84595 -0.00044988 -0.31394 -0.00016695 531.8003348528441 47.804 0.16827 47.451 47.367 47.535 -0.3526 16 7 3 0 0 0 0.076472 1 25646 25646 38.615 4.213 1 3286600 + 27171 176 18195 18542 32077 32077 0.058614318515992636 KLAASLYRSD 10 Unmodified _KLAASLYRSD_ 0 0 0 REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2 REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.8339233398438 2 562.308938 1122.60332 0.6137 0.00034509 2.1197 0.0011919 2.7334 0.001537 562.3093955515935 98.708 0.098297 92.532 92.478 92.576 -6.1757 11 6 2 0 0 0 0.22769 1 65538 65538 16.149 2.2431 1 45517000 + 27172 22896 18196 18543 32078 32078 0.04692513017721467 KLADDVDLEQV 11 Unmodified _KLADDVDLEQV_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENST00000480327.1_1_9:35060776-35061606:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.8212280273438 2 622.822075 1243.6296 -0.090281 -5.6229E-05 -0.11249 -7.0064E-05 -0.20277 -0.00012629 622.8219187971374 48.359 0.30041 48.359 48.231 48.531 0 41 14 4 0 0 0 0.072475 2 26499 26499;26621 46.022 14.754 1 26631000 27173 7318 18197 18544 32079;32080 32079 0.017527373985103623 KLADDVDLEQV 11 Unmodified _KLADDVDLEQV_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF;ENST00000480327.1_1_9:35060776-35061606:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8228759765625 2 622.822075 1243.6296 0.91476 0.00056973 0.42096 0.00026218 1.3357 0.00083191 622.8220995080508 55.447 0.46641 49.526 49.3 49.766 -5.9211 73 28 3 0 0 0 8.4394E-07 2 35391 35252;35391 104.48 39.011 1 35819000 27174 7318 18197 18544 32081;32082 32082 0.017527373985103623 KLADQCTGL 9 Carbamidomethyl (C) _KLADQC(Carbamidomethyl (C))TGL_ KLADQC(1)TGL KLADQC(83)TGL 0 1 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MSMS AL20221201_MKP_PDAC_01 4 503.2558288574219 2 503.255317 1004.49608 NaN NaN NaN NaN NaN NaN NaN 31.082 1 27.386 26.886 27.886 -3.6958 0 0 0 0.016974 1 17578 17578 82.529 22.455 1 27175 3708;7630 18198 18545 32083 32083 368 -0.005987801881815358 KLADQYPHL 9 Unmodified _KLADQYPHL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1979370117188 3 362.197708 1083.57129 0.4395 0.00015919 0.34331 0.00012435 0.78281 0.00028353 362.19780056545966 36.785 0.40975 36.785 36.588 36.997 0 46 19 3 0 0 0 0.10734 2 19502 19502;19608 23.79 14.246 1 4025400 27176 3847 18199 18546 32084;32085 32084 0.032851453345756454 KLADQYPHL 9 Unmodified _KLADQYPHL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.1980285644531 3 362.197708 1083.57129 0.89504 0.00032418 -0.20342 -7.368E-05 0.69161 0.0002505 362.19763861033886 41.342 0.53165 36.734 36.467 36.999 -4.6079 49 34 2 0 0 0 0.095405 2 24943 24804;24943 24.991 15.447 1 13863000 27177 3847 18199 18546 32086;32087 32087 0.032851453345756454 KLAEALPSL 9 Unmodified _KLAEALPSL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2873840332031 2 471.286943 940.559333 0.10235 4.8235E-05 -0.41293 -0.00019461 -0.31058 -0.00014637 471.2867380390941 55.79 0.34666 55.312 55.112 55.459 -0.47798 40 16 3 0 0 0 0.0082353 1 30230 30230 96.111 37.432 1 8324600 27178 8844 18200 18547 32088 32088 0.0866752859137705 KLAEALPSL 9 Unmodified _KLAEALPSL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2860107421875 2 471.286943 940.559333 1.0197 0.00048056 0.15525 7.3166E-05 1.1749 0.00055372 471.2869245168858 61.676 0.39156 55.5 55.331 55.723 -6.1757 42 20 3 0 0 0 0.0086209 2 39707 39707;39839 89.401 20.296 1 42153000 27179 8844 18200 18547 32089;32090 32089 0.0866752859137705 KLAEGVLDV 9 Unmodified _KLAEGVLDV_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2768859863281 2 472.276575 942.538597 0.38621 0.0001824 0.19745 9.3252E-05 0.58366 0.00027565 472.27668116409586 50.225 0.29319 50.225 50.096 50.389 0 35 13 3 0 0 0 0.012668 1 27659 27659 72.968 18.194 1 15117000 27180 9157 18201 18548 32091 32091 0.0650293821172454 KLAEGVLDV 9 Unmodified _KLAEGVLDV_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2771301269531 2 472.276575 942.538597 0.46259 0.00021847 -0.66302 -0.00031313 -0.20042 -9.4655E-05 472.27619705066905 56.763 0.34262 50.786 50.632 50.975 -5.9769 30 19 2 0 0 0 0.012668 1 36244 36244 72.968 23.035 1 32095000 27181 9157 18201 18548 32092 32092 0.0650293821172454 KLAENIDAQL 10 Unmodified _KLAENIDAQL_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.80859375 2 557.808771 1113.60299 0.2376 0.00013254 -0.96453 -0.00053802 -0.72693 -0.00040549 557.8081864971952 43.831 0.17318 43.831 43.689 43.863 0 14 9 2 0 0 0 4.0285E-07 1 23795 23795 137.42 51.782 1 22542000 27182 10417 18202 18549 32093 32093 0.050730932978467536 KLAENIDAQL 10 Unmodified _KLAENIDAQL_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8089599609375 2 557.808771 1113.60299 0.9439 0.00052652 0.092048 5.1345E-05 1.0359 0.00057786 557.808875672648 49.815 0.4365 44.276 44.094 44.531 -5.5391 68 27 3 0 0 0 0.00019901 2 31249 31106;31249 117.76 31.429 1 64187000 27183 10417 18202 18549 32094;32095 32095 0.050730932978467536 KLANPPPMV 9 Unmodified _KLANPPPMV_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MSMS AL20221201_MKP_PDAC_01 4 483.775634765625 2 483.775688 965.536823 NaN NaN NaN NaN NaN NaN NaN 44.151 1 39.299 38.799 39.799 -4.852 0 0 0 0.043758 1 26918 26918 60.39 39.936 1 27184 6095 18203 18550 32096 32096 0.05267605922108487 KLCDVTTGL 9 Carbamidomethyl (C) _KLC(Carbamidomethyl (C))DVTTGL_ KLC(1)DVTTGL KLC(66)DVTTGL 0 1 0 ENSG00000164323|ENST00000458385|CFAP97;nc|ENSG00000164323|Q9P2B7-2|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 ENSG00000164323|ENST00000458385|CFAP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7655334472656 2 503.765517 1005.51648 0.6751 0.00034009 -0.88886 -0.00044778 -0.21376 -0.00010768 503.7651066264364 45.583 0.42345 40.628 40.425 40.848 -4.9549 76 28 3 0 0 0 0.017075 2 27926 27926;28073 66.457 16.902 1 52732000 27185 7180 18204 18551 32097;32098 32097 702 0.013943904716370525 KLCIFDRDSL 10 Unmodified _KLCIFDRDSL_ 0 0 0 ENSG00000196083|ENST00000447382|IL1RAP;nc|ENSG00000196083|Q9NPH3-5|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP ENSG00000196083|ENST00000447382|IL1RAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3184814453125 2 605.318448 1208.62234 NaN NaN NaN NaN NaN NaN NaN 56.374 1 55.888 55.388 56.388 -0.48554 0 0 0 0.97302 1 30608 30608 3.5965 0 1 27186 9756 18205 18552 32099 32099 0.02637726317107081 KLCPILWIL 9 Unmodified _KLCPILWIL_ 0 0 0 ENST00000396152.6_1_7:33055451-33057091:-|nuORF ENST00000396152.6_1_7:33055451-33057091:-|nuORF ENST00000396152.6_1_7:33055451-33057091:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8970031738281 3 366.896313 1097.66711 0.013902 5.1004E-06 -0.48598 -0.0001783 -0.47208 -0.0001732 366.89581023312843 17.974 0.078434 17.98 17.921 17.999 0.0060463 6 4 2 0 0 0 0.46501 1 9093 9093 9.3831 0.63772 1 594350 27187 12785 18206 18553 32100 32100 0.1221820192110954 KLCSQMEQLE 10 Unmodified _KLCSQMEQLE_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5265197753906 3 403.526508 1207.55769 0.52126 0.00021034 -0.095986 -3.8733E-05 0.42528 0.00017161 403.52639190807616 85.29 0.66003 84.788 84.388 85.048 -0.5015 90 48 3 0 0 0 0.70363 1 46808 46808 1.2148 0.4383 1 5784900 27188 980 18207 18554 32101 32101 -0.03778216551177138 KLCSQMEQLE 10 Unmodified _KLCSQMEQLE_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.52685546875 3 403.526508 1207.55769 0.21034 8.4879E-05 1.5145 0.00061116 1.7249 0.00069603 403.52707949565 98.773 0.41544 92.597 92.493 92.908 -6.1757 53 29 2 0 0 0 0.36296 1 65531 65531 16.275 1.0261 1 67124000 27189 980 18207 18554 32102 32102 -0.03778216551177138 KLCTGLSHIV 10 Unmodified _KLCTGLSHIV_ 0 0 0 REV__nc|ENSG00000166348|Q70EL1-4|USP54 REV__nc|ENSG00000166348|Q70EL1-4|USP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5389099121094 3 357.539077 1069.5954 0.47173 0.00016866 -1.4253 -0.00050961 -0.95359 -0.00034095 357.87290397630335 42.74 0.38418 42.731 42.581 42.965 -0.0088196 43 17 3 0 0 0 0.64628 1 22866 22866 5.0475 2.549 1 18014000 + 27190 22109 18208 18555 32103 32103 0.06338662496591496 KLDAFVEGV 9 Unmodified _KLDAFVEGV_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2695007324219 2 489.26875 976.522947 0.11853 5.7995E-05 1.6505 0.00080754 1.769 0.00086554 489.26924078499 52.454 0.30647 52.454 52.311 52.617 0 37 13 4 0 0 0 0.0094097 1 29002 29002 82.529 6.7685 1 11580000 27191 6369 18209 18556 32104 32104 0.03374651694673503 KLDDHIRIKI 10 Unmodified _KLDDHIRIKI_ 0 0 0 REV__ENST00000471763.1_1_7:107215639-107217045:+|nuORF REV__ENST00000471763.1_1_7:107215639-107217045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.92431640625 3 417.590828 1249.75066 -0.76049 -0.00031757 0.093834 3.9184E-05 -0.66666 -0.00027839 417.5908169388669 27.596 0.16929 27.596 27.469 27.638 0 10 7 2 0 0 0 0.713 1 14239 14239 1.4551 0.34536 1 587610 + 27192 18468 18210 18557 32105 32105 0.13577029622501868 KLDESQFTF 9 Unmodified _KLDESQFTF_ 0 0 0 REV__ENSG00000164684|ENST00000327835|ZNF704 REV__ENSG00000164684|ENST00000327835|ZNF704 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7776489257812 2 557.774396 1113.53424 0.67089 0.00037421 2.3711 0.0013225 3.0419 0.0016967 557.7753872205287 87.769 0.37879 87.265 87.081 87.46 -0.50423 27 18 2 0 0 0 0.55144 1 48074 48074 4.3292 0.38484 1 516290 + 27193 21939 18211 18558 32106 32106 -0.017985710018592727 KLDFTEKDRG 10 Unmodified _KLDFTEKDRG_ 0 0 0 REV__nc|ENSG00000079263|Q13342-6|SP140 REV__nc|ENSG00000079263|Q13342-6|SP140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.8150634765625 2 604.817127 1207.6197 -0.67114 -0.00040592 -0.061535 -3.7217E-05 -0.73268 -0.00044313 604.8169789402225 19.733 0.13134 19.733 19.7 19.831 0 27 16 2 0 0 0 0.67459 1 9889 9889 5.7319 0 1 1006400 + 27194 17643 18212 18559 32107 32107 0.024195941837888313 KLDIDKSV 8 Unmodified _KLDIDKSV_ 0 0 0 ENST00000523198.5_1_5:153826164-153832030:+|nuORF;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L ENST00000523198.5_1_5:153826164-153832030:+|nuORF ENST00000523198.5_1_5:153826164-153832030:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 459.2701721191406 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 34.272 1 30.286 29.786 30.786 -3.9853 0 0 0 0.95254 1 19745 19745 10.074 2.7847 1 27195 7207 18213 18560 32108 32108 0.06134651694674176 KLDPIPDSF 9 Unmodified _KLDPIPDSF_ 0 0 0 ENSG00000133317|ENST00000394618|LGALS12;nc|ENSG00000133317|Q96DT0-6|LGALS12;nc|ENSG00000133317|Q96DT0-3|LGALS12;nc|ENSG00000133317|Q96DT0|LGALS12;nc|ENSG00000133317|Q96DT0-7|LGALS12 ENSG00000133317|ENST00000394618|LGALS12 ENSG00000133317|ENST00000394618|LGALS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2748413085938 2 516.274032 1030.53351 0.37269 0.00019241 1.8541 0.0009572 2.2267 0.0011496 516.2751222673096 76.007 0.60791 75.528 75.102 75.71 -0.47945 72 26 4 0 0 0 0.1773 1 41655 41655 25.399 4.5281 1 5692300 27196 4507 18214 18561 32109 32109 0.01946634349087617 KLDPTKTTL 9 Unmodified _KLDPTKTTL_ 0 0 0 ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.8029479980469 2 508.802957 1015.59136 NaN NaN NaN NaN NaN NaN NaN 32.192 1 28.335 27.835 28.835 -3.8562 0 0 0 0.0076565 1 18312 18312 97.741 26.033 1 27197 2206 18215 18562 32110 32110 0.08418896274520193 KLDQDLNEV 9 Unmodified _KLDQDLNEV_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2777099609375 2 537.277303 1072.54005 -0.39738 -0.0002135 0.5057 0.0002717 0.10832 5.8197E-05 537.2774514284741 33.185 0.25709 33.185 33.049 33.306 0 30 12 3 0 0 0 0.0090524 1 17358 17358 85.642 17.561 1 4715900 27198 2543 18216 18563 32111 32111 0.006685275098107013 KLDQDLNEV 9 Unmodified _KLDQDLNEV_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2787475585938 2 537.277303 1072.54005 0.32558 0.00017493 2.1234 0.0011408 2.449 0.0013158 537.2783579503706 38.497 0.32553 34.128 33.964 34.29 -4.3689 37 20 2 0 0 0 0.011671 2 22769 22638;22769 75.761 22.1 1 22507000 27199 2543 18216 18563 32112;32113 32113 0.006685275098107013 KLDRPKRSV 9 Unmodified _KLDRPKRSV_ 0 0 0 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8958740234375 3 366.896252 1097.66693 -0.57031 -0.00020925 0.41215 0.00015122 -0.15816 -5.8029E-05 366.8962111382332 17.973 0.070545 17.987 17.951 18.021 0.013865 13 10 2 0 0 0 0.58145 1 8977 8977 2.4985 1.3051 1 435180 + 27200 21981 18217 18564 32114 32114 0.12199918245482877 KLDSEAVPR 9 Unmodified _KLDSEAVPR_ 0 0 0 ENSG00000089639|ENST00000203556|GMIP;nc|ENSG00000089639|Q9P107-2|GMIP ENSG00000089639|ENST00000203556|GMIP ENSG00000089639|ENST00000203556|GMIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.256591796875 2 507.782556 1013.55056 -0.19004 -9.6499E-05 -1.5485 -0.00078629 -1.7385 -0.00088279 507.78157219506795 26.28 0.15753 26.28 26.228 26.386 0 10 7 2 0 0 0 0.19891 1 13480 13480 11.64 0.81637 1 578380 27201 1532 18218 18565 32115 32115 0.04432554954905754 KLDTMLDR 8 Unmodified _KLDTMLDR_ 0 0 0 REV__nc|ENSG00000197043|P08133-2|ANXA6 REV__nc|ENSG00000197043|P08133-2|ANXA6 MSMS AL20221201_MKP_PDAC_01 4 496.2666931152344 2 496.265684 990.516816 NaN NaN NaN NaN NaN NaN NaN 96.105 1 89.929 89.429 90.429 -6.1757 0 0 0 0.7268 1 63675 63675 26.884 9.9414 1 + 27202 23889 18219 18566 32116 32116 0.02117810191487024 KLDVDAPRL 9 Unmodified _KLDVDAPRL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.8004760742188 2 513.800749 1025.58694 -0.021856 -1.123E-05 -2.722 -0.0013986 -2.7439 -0.0014098 513.7991036882995 40.454 0.13833 40.454 40.333 40.471 0 9 6 2 0 0 0 0.171 1 21731 21731 26.021 4.2741 1 2544000 27203 4157 18220 18567 32117 32117 0.07517431851601941 KLDVGNAEV 9 Unmodified _KLDVGNAEV_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.756103515625 2 472.756007 943.497461 -0.51944 -0.00024557 0.21437 0.00010134 -0.30508 -0.00014423 472.75583549946344 33.026 0.2219 33.026 32.908 33.13 0 20 10 3 0 0 0 0.0094097 1 17268 17268 82.529 21.172 1 4627500 27204 9418 18221 18568 32118 32118 0.023451771722420744 KLDVGNAEV 9 Unmodified _KLDVGNAEV_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7571716308594 2 472.756007 943.497461 0.9473 0.00044784 -0.73376 -0.00034689 0.21354 0.00010095 472.75573999793176 38.074 0.38401 33.705 33.516 33.9 -4.3689 37 22 2 0 0 0 0.01958 2 22356 22356;22480 63.961 15.615 1 22531000 27205 9418 18221 18568 32119;32120 32119 0.023451771722420744 KLDYLLDNLE 10 Unmodified _KLDYLLDNLE_ 0 0 0 ENST00000528764.1_1_11:86736467-86736701:+|nuORF ENST00000528764.1_1_11:86736467-86736701:+|nuORF ENST00000528764.1_1_11:86736467-86736701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.3308715820312 2 618.329536 1234.64452 0.36063 0.00022299 0.099777 6.1695E-05 0.46041 0.00028469 618.3295119677093 76.742 0.22075 76.742 76.589 76.809 0 13 8 2 0 0 0 0.6966 1 42659 42659 3.2813 0 1 407610 27206 14864 18222 18569 32121 32121 0.03658229266488888 KLEDEKCPHC 10 Unmodified _KLEDEKCPHC_ 0 0 0 ENST00000466027.1_1_13:96289346-96294343:-|nuORF;nc|ENSG00000134874|Q86YF9-3|DZIP1;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1 ENST00000466027.1_1_13:96289346-96294343:-|nuORF ENST00000466027.1_1_13:96289346-96294343:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.1818237304688 3 401.182853 1200.52673 0.29324 0.00011764 -1.3841 -0.00055528 -1.0909 -0.00043764 401.1819477575979 23.682 0.67602 20.855 20.537 21.213 -2.8273 95 40 3 0 0 0 0.69917 1 12897 12897 1.4551 0 1 15195000 27207 13748 18223 18570 32122 32122 -0.06551369865428569 KLEDVHKWL 9 Unmodified _KLEDVHKWL_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8893737792969 3 389.888874 1166.64479 1.3944 0.00054366 0.012523 4.8827E-06 1.4069 0.00054854 389.8888041689408 32.31 0.53421 28.453 28.198 28.732 -3.8562 106 30 5 0 0 0 0.37578 1 18402 18402 13.615 2.7159 1 388570000 + 27208 17354 18224 18571 32123 32123 0.06813693777030494 KLEEKTKEL 9 Unmodified _KLEEKTKEL_ 0 0 0 REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2205200195312 3 373.22029 1116.63904 0.051818 1.934E-05 0.59507 0.00022209 0.64689 0.00024143 373.22036437472235 18.713 0.17765 18.719 18.606 18.784 0.0060463 15 8 2 0 0 0 0.36964 1 9496 9496 9.544 0 1 4361300 + 27209 20260 18225 18572 32124 32124 0.0853855047473644 KLEEKTKEL 9 Unmodified _KLEEKTKEL_ 0 0 0 REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF REV__ENST00000532461.5_1_11:110102596-110108435:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.221923828125 3 373.22029 1116.63904 1.6846 0.00062873 1.0132 0.00037814 2.6978 0.0010069 373.2206670766753 20.292 0.46215 17.599 17.4 17.862 -2.693 88 29 4 0 0 0 0.43463 1 10918 10918 7.1017 0 1 36007000 + 27210 20260 18225 18572 32125 32125 0.0853855047473644 KLEIRKARRWK 11 Unmodified _KLEIRKARRWK_ 0 0 0 REV__ENST00000503676.5_1_17:47684685-47685264:-|nuORF REV__ENST00000503676.5_1_17:47684685-47685264:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.3144226074219 3 495.315921 1482.92593 1.6138 0.00079936 -0.85751 -0.00042474 0.75633 0.00037462 495.31487175314277 104.23 0.11559 98.057 97.991 98.107 -6.1757 17 6 3 0 0 0 0.74452 1 69812 69812 0.073264 0 1 59048000 + 27211 28042 18226 18573 32126 32126 0.2037886920738856 KLEIRKARRWK 11 Unmodified _KLEIRKARRWK_ 0 0 0 REV__ENST00000503676.5_1_17:47684685-47685264:-|nuORF REV__ENST00000503676.5_1_17:47684685-47685264:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.6513061523438 3 495.315921 1482.92593 1.6156 0.00080025 -0.28418 -0.00014076 1.3314 0.00065949 495.31567252922406 104.96 0.14749 98.783 98.693 98.841 -6.1757 41 10 5 0 0 0 0.74452 1 70223 70223 0.073264 0.073264 1 190830000 + 27212 28042 18226 18573 32127 32127 0.2037886920738856 KLEKELLKQIK 11 Unmodified _KLEKELLKQIK_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.4471435546875 2 685.442495 1368.87044 1.7522 0.001201 -0.76281 -0.00052286 0.98934 0.00067814 685.4416459549458 105.67 0.50912 99.493 99.324 99.834 -6.1757 151 51 4 0 0 0 0.7326 2 70738 70720;70738 1.1933 0 1 41759000 27213 2711 18227 18574 32128;32129 32129 0.20075598176413223 KLEKKSLKYK 10 Unmodified _KLEKKSLKYK_ 0 0 0 REV__ENSG00000160678|ENST00000292169|S100A1 REV__ENSG00000160678|ENST00000292169|S100A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.905029296875 2 632.903005 1263.79146 1.4064 0.0008901 -0.56302 -0.00035634 0.84336 0.00053377 632.9027784285514 105.88 1.0046 99.706 99.434 100.44 -6.1757 244 143 3 0 0 0 0.72292 3 70784 70784;70886;70992 0.35063 0.35063 1 12953000 + 27214 21554 18228 18575 32130;32131;32132 32130 0.17011370942122994 KLEKMTVGKK 10 Unmodified _KLEKMTVGKK_ 0 0 0 nc|ENSG00000180777|Q9BXX2-2|ANKRD30B;nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B nc|ENSG00000180777|Q9BXX2-2|ANKRD30B nc|ENSG00000180777|Q9BXX2-2|ANKRD30B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5387573242188 3 387.905648 1160.69511 -0.31166 -0.00012089 -2.7046 -0.0010491 -3.0162 -0.00117 387.9043670068406 35.005 0.16125 34.783 34.691 34.852 -0.2224 12 6 2 0 0 0 0.23609 1 18302 18302 5.4027 1.2132 1 837840 27215 8922 18229 18576 32133 32133 0.1211948011050481 KLEKNRRAH 9 Unmodified _KLEKNRRAH_ 0 0 0 ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT MSMS AL20221201_MKP_PDAC_01 4 384.5641174316406 3 384.563384 1150.66832 NaN NaN NaN NaN NaN NaN NaN 105.05 1 98.871 98.371 99.371 -6.1757 0 0 0 0.85447 1 70340 70340 0.96228 0.26461 1 27216 1029 18230 18577 32134 32134 0.09901552334213193 KLEPPRELR 9 Unmodified _KLEPPRELR_ 0 0 0 FAM8A1-CAP2|1|fusion;ENSG00000137414|ENST00000259963|FAM8A1;FAM8A1|p.A91Rfs*18|1|0.1|ENSG00000137414|chr6:17600679-17600679|G/-|frameshift_variant FAM8A1-CAP2|1|fusion FAM8A1-CAP2|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.89599609375 3 379.89614 1136.66659 NaN NaN NaN NaN NaN NaN NaN 17.993 1 18.007 17.507 18.507 0.013865 0 0 0 0.81228 1 8989 8989 3.5871 1.0886 1 27217 4929 18231 18578 32135 32135 0.10372498525589435 KLEREHKI 8 Unmodified _KLEREHKI_ 0 0 0 BOD1L1|p.R656I|1|0.03|ENSG00000038219|chr4:13604933-13604933|C/A|missense_variant BOD1L1|p.R656I|1|0.03|ENSG00000038219|chr4:13604933-13604933|C/A|missense_variant BOD1L1|p.R656I|1|0.03|ENSG00000038219|chr4:13604933-13604933|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.5453796386719 3 351.545219 1051.61383 -0.31241 -0.00010983 0.83052 0.00029197 0.51811 0.00018214 351.8797265927094 23.742 0.14989 23.742 23.641 23.791 0 11 7 2 0 0 0 0.80859 1 12128 12128 1.4819 0 1 527010 27218 45 18232 18579 32136 32136 0.09008540462787096 KLFAEEDLP 9 Unmodified _KLFAEEDLP_ 0 0 0 REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF REV__ENST00000530761.5_1_11:117857521-117870353:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.7909545898438 2 531.279315 1060.54408 NaN NaN NaN NaN NaN NaN NaN 16.977 1 14.39 13.89 14.89 -2.5866 0 0 0 0.6557 1 8837 8837 10.824 0 1 + 27219 18703 18233 18580 32137 32137 0.016226170034997267 KLFAGLVHV 9 Unmodified _KLFAGLVHV_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.3054809570312 2 492.30547 982.596387 0.64331 0.0003167 -0.24898 -0.00012257 0.39433 0.00019413 492.30544951197936 54.897 0.23761 54.828 54.681 54.919 -0.068741 22 11 3 0 0 0 0.012158 1 29810 29810 74.396 27.475 1 3494500 27220 7341 18234 18581 32138 32138 0.10439244927806612 KLFAGLVHV 9 Unmodified _KLFAGLVHV_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3061828613281 2 492.30547 982.596387 1.1674 0.00057472 -1.0277 -0.00050593 0.13971 6.8782E-05 492.3049447035508 91.956 0.20509 85.781 85.648 85.853 -6.1757 16 11 2 0 0 0 0.03327 1 60830 60830 53.576 15.424 1 6204300 27221 7341 18234 18581 32139 32139 0.10439244927806612 KLFDDKLQNC 10 Carbamidomethyl (C) _KLFDDKLQNC(Carbamidomethyl (C))_ KLFDDKLQNC(1) KLFDDKLQNC(200) 0 1 0 nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF nc|ENSG00000117859|Q96SU4-3|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8194580078125 2 640.818812 1279.62307 0.92899 0.00059531 -0.099865 -6.3995E-05 0.82912 0.00053132 640.8190874225622 37.861 0.28783 33.492 33.348 33.636 -4.3689 32 16 3 0 0 0 8.3175E-30 1 22238 22238 195.04 137.32 1 8053100 27222 3339 18235 18582 32140 32140 340 -0.005554790338464954 KLFDDKLQNC 10 Carbamidomethyl (C) _KLFDDKLQNC(Carbamidomethyl (C))_ KLFDDKLQNC(1) KLFDDKLQNC(50) 0 1 0 nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF nc|ENSG00000117859|Q96SU4-3|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5487976074219 3 427.5483 1279.62307 1.2789 0.00054681 -0.33119 -0.0001416 0.94776 0.00040521 427.548288065435 37.868 0.31573 33.499 33.32 33.636 -4.3689 33 18 2 0 0 0 0.086206 1 22262 22262 49.742 36.886 1 16936000 27223 3339 18235 18582 32141 32141 340 -0.005554790338464954 KLFDRPQELKL 11 Unmodified _KLFDRPQELKL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;ENST00000494124.2_1_9:19316810-19337609:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.9418640136719 3 462.941638 1385.80309 0.38171 0.00017671 -0.0050515 -2.3386E-06 0.37666 0.00017437 462.94181843149465 85.652 0.35528 79.476 79.241 79.596 -6.1757 29 20 2 0 0 0 0.0128 2 56307 56307;56437 64.86 14.213 1 18012000 27224 4903 18236 18583 32142;32143 32142 0.12561567965462928 KLFDYLNQE 9 Unmodified _KLFDYLNQE_ 0 0 0 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 MSMS AL20221201_MKP_PDAC_01 4 390.5314025878906 3 390.532756 1168.57644 NaN NaN NaN NaN NaN NaN NaN 9.6063 1 7.1243 6.6243 7.6243 -2.482 0 0 0 0.85852 1 4847 4847 0.20686 0 1 + 27225 21751 18237 18584 32144 32144 -0.0011059559351451753 KLFEDELTL 9 Unmodified _KLFEDELTL_ 0 0 0 ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.231201171875 2 554.300247 1106.58594 1.222 0.00067736 0.31321 0.00017361 1.5352 0.00085097 554.3003560571811 88.333 0.68074 82.157 81.889 82.569 -6.1757 50 37 2 0 0 0 0.13704 1 58486 58486 26.268 0.86883 1 18439000 27226 7816 18238 18585 32145 32145 0.036911726920379806 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8719482421875 3 405.87166 1214.59315 -0.69075 -0.00028035 0.3578 0.00014522 -0.33295 -0.00013513 405.8717726160988 34.353 0.27071 34.353 34.207 34.478 0 35 13 3 0 0 0 0.0090596 1 18064 18064 68.76 52.485 1 19281000 27227 5714 18239 18586 32146 32146 -0.005560947075309741 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.3038940429688 2 608.303852 1214.59315 -0.70013 -0.00042589 0.39589 0.00024082 -0.30424 -0.00018507 608.303896204133 34.355 0.21547 34.355 34.226 34.442 0 27 10 3 0 0 0 2.8143E-07 1 18087 18087 139.38 78.021 1 6888600 27228 5714 18239 18586 32147 32147 -0.005560947075309741 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2069091796875 3 405.87166 1214.59315 0.85018 0.00034506 0.23051 9.3559E-05 1.0807 0.00043862 405.8716277264593 38.954 0.3427 34.504 34.361 34.704 -4.4509 36 21 2 0 0 0 0.003386 2 23022 23022;23159 80.896 66.058 1 16460000 27229 5714 18239 18586 32148;32149 32148 -0.005560947075309741 KLFEGENEHL 10 Unmodified _KLFEGENEHL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MSMS AL20221201_MKP_PDAC_01 4 608.3045043945312 2 608.303852 1214.59315 NaN NaN NaN NaN NaN NaN NaN 38.945 1 34.494 33.994 34.994 -4.4509 0 0 0 4.8015E-06 1 23045 23045 118.21 60.487 1 27230 5714 18239 18586 32150 32150 -0.005560947075309741 KLFEKVKEV 9 Unmodified _KLFEKVKEV_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8971252441406 3 373.897258 1118.66995 -0.48325 -0.00018069 0.2698 0.00010088 -0.21345 -7.9808E-05 373.89737040432647 25.749 0.2697 25.749 25.613 25.883 0 39 12 4 0 0 0 0.060956 1 13190 13190 39.923 19.052 1 10897000 27231 885 18240 18587 32151 32151 0.11535748579603933 KLFEKVKEV 9 Unmodified _KLFEKVKEV_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8968200683594 3 373.897258 1118.66995 NaN NaN NaN NaN NaN NaN NaN 25.907 1 25.89 25.39 26.39 -0.017006 0 0 0 0.20097 1 13305 13305 23.964 12.333 1 27232 885 18240 18587 32152 32152 0.11535748579603933 KLFEKVKEV 9 Unmodified _KLFEKVKEV_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3425903320312 2 560.342249 1118.66995 0.76415 0.00042819 -0.012032 -6.7418E-06 0.75212 0.00042145 560.3418175481393 29.681 0.23874 26.379 26.305 26.544 -3.3016 15 12 2 0 0 0 0.0026373 1 16727 16727 128.58 42.247 1 23805000 27233 885 18240 18587 32153 32153 0.11535748579603933 KLFGMIITI 9 Unmodified _KLFGMIITI_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.3172607421875 2 518.317189 1034.61982 0.557 0.0002887 -0.29032 -0.00015048 0.26668 0.00013822 518.3171493473212 90.303 0.72859 90.345 89.995 90.723 0.042183 56 25 4 0 0 0 0.05447 1 50250 50250 43.858 3.901 1 31003000 27234 801 18241 18588 32154 32154 0.10389922650097105 KLFGMIITI 9 Unmodified _KLFGMIITI_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.319580078125 2 518.317189 1034.61982 1.1558 0.00059906 -0.61616 -0.00031936 0.53963 0.0002797 518.3170224614341 100.45 0.30176 94.279 94.058 94.36 -6.1757 56 18 4 0 0 0 0.039985 1 67064 67064 49.933 9.9757 1 263140000 27235 801 18241 18588 32155 32155 0.10389922650097105 KLFGMIITI 9 Oxidation (M) _KLFGM(Oxidation (M))IITI_ KLFGM(1)IITI KLFGM(59)IITI 0 0 1 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3141479492188 2 526.314646 1050.61474 1.4839 0.00078102 -0.79438 -0.00041809 0.68956 0.00036293 526.3143987014973 98.108 0.42111 91.933 91.8 92.221 -6.1757 90 27 5 0 0 0 0.024882 1 65003 65003 58.679 7.049 1 670290000 27236 801 18241 18589 32156 32156 125 0.09145618787465537 KLFHGEIWPA 10 Unmodified _KLFHGEIWPA_ 0 0 0 ENST00000447578.6_1_12:110930933-110930975:-|nuORF ENST00000447578.6_1_12:110930933-110930975:-|nuORF ENST00000447578.6_1_12:110930933-110930975:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8855590820312 3 399.885353 1196.63423 0.24868 9.9443E-05 -0.49799 -0.00019914 -0.24931 -9.9695E-05 399.88503860632886 52.072 0.29333 52.013 51.875 52.168 -0.058918 30 13 3 0 0 0 0.34435 1 28197 28197 24.882 12.009 1 5832900 27237 13481 18242 18590 32157 32157 0.0437771112262908 KLFIFRFPL 9 Unmodified _KLFIFRFPL_ 0 0 0 REV__ENST00000527636.5_3_11:12696986-12785834:+|nuORF REV__ENST00000527636.5_3_11:12696986-12785834:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2477416992188 3 394.246222 1179.71684 1.8871 0.00074397 1.2293 0.00048463 3.1163 0.0012286 394.2465976357949 100.86 0.1803 94.687 94.584 94.764 -6.1757 27 11 3 0 0 0 0.61256 1 67528 67528 0.26902 0 1 55124000 + 27238 28394 18243 18591 32158 32158 0.13416652921432615 KLFILLYMH 9 Unmodified _KLFILLYMH_ 0 0 0 REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF REV__ENST00000494571.1_1_3:112251548-112253195:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.34375 2 589.343738 1176.67292 0.88082 0.00051911 0.67396 0.0003972 1.5548 0.00091631 589.3442685038706 83.074 1.1116 83.136 82.27 83.382 0.061996 91 42 3 0 0 0 0.58466 1 45619 45619 2.3027 0.4585 1 8026200 + 27239 20742 18244 18592 32159 32159 0.09165300432778167 KLFKREREQR 10 Unmodified _KLFKREREQR_ 0 0 0 REV__ENSG00000159450|ENST00000614923|TCHH REV__ENSG00000159450|ENST00000614923|TCHH MSMS AL20221201_MKP_PDAC_01 4 463.9388732910156 3 463.940632 1388.80007 NaN NaN NaN NaN NaN NaN NaN 104.99 1 98.818 98.318 99.318 -6.1757 0 0 0 0.99008 1 70293 70293 1.7423 0.28716 1 + 27240 21483 18245 18593 32160 32160 0.1212173763130977 KLFLYSFSWDF 11 Unmodified _KLFLYSFSWDF_ 0 0 0 ENSG00000132952|ENST00000255304|USPL1;nc|ENSG00000132952|Q5W0Q7-2|USPL1 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.912841796875 3 484.911456 1451.71254 0.20372 9.8786E-05 1.0063 0.00048797 1.21 0.00058676 484.91211042949584 52.523 0.3246 52.523 52.353 52.678 0 43 14 4 0 0 0 0.71341 1 29036 29036 1.2148 0.588 1 12956000 27241 4468 18246 18594 32161 32161 0.00475098917172545 KLFMKIYL 8 Unmodified _KLFMKIYL_ 0 0 0 REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5493469238281 3 352.548913 1054.62491 -0.03667 -1.2928E-05 0.35716 0.00012592 0.32049 0.00011299 352.8831721282311 18.324 0.1124 18.33 18.255 18.368 0.0060463 10 6 2 0 0 0 0.79669 1 9282 9282 6.2058 1.6769 1 990970 + 27242 27177 18247 18595 32162 32162 0.09978226512725996 KLFMKIYL 8 Unmodified _KLFMKIYL_ 0 0 0 REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5491027832031 3 352.548913 1054.62491 1.7971 0.00063356 0.035613 1.2555E-05 1.8327 0.00064612 352.54890448562116 19.8 0.40706 17.144 16.926 17.333 -2.6564 61 25 3 0 0 0 0.79669 1 10578 10578 6.2058 0.47393 1 12625000 + 27243 27177 18247 18595 32163 32163 0.09978226512725996 KLFMKIYL 8 Unmodified _KLFMKIYL_ 0 0 0 REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF REV__ENST00000448507.5_1_4:7033984-7034191:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.548913 1054.62491 -0.03667 -1.2928E-05 0.35716 0.00012592 0.32049 0.00011299 352.8831721282311 18.324 0.1124 18.33 18.255 18.368 0.0060463 0 0 NaN 6.2058 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 990970 + 27244 27177 18247 18595 0.09978226512725996 KLFNEFIQL 9 Unmodified _KLFNEFIQL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3251342773438 2 576.326599 1150.63865 0.29833 0.00017194 -0.21422 -0.00012346 0.084113 4.8477E-05 576.3260009687349 79.99 0.18922 80.048 79.905 80.094 0.057587 18 7 3 0 0 0 0.19127 1 44229 44229 24.021 0 1 2494200 27245 894 18248 18596 32164 32164 0.06935175545504535 KLFNESHGIFL 11 Unmodified _KLFNESHGIFL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5720825195312 3 435.571434 1303.69247 1.3173 0.00057379 0.31758 0.00013833 1.6349 0.00071212 435.9060174345578 94.145 0.20155 87.97 87.862 88.064 -6.1757 18 11 2 0 0 0 0.37147 1 62357 62357 23.016 3.8717 1 9855400 27246 3852 18249 18597 32165 32165 0.05277347977221325 KLFNESHGIFL 11 Unmodified _KLFNESHGIFL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.8529052734375 2 652.853512 1303.69247 1.1382 0.00074311 0.53737 0.00035082 1.6756 0.0010939 652.8535272869459 94.147 0.18375 87.971 87.88 88.064 -6.1757 17 10 2 0 0 0 0.019307 1 62374 62374 77.049 50.78 1 6334200 27247 3852 18249 18597 32166 32166 0.05277347977221325 KLFPHHHLL 9 Unmodified _KLFPHHHLL_ 0 0 0 ENST00000309534.10_1_3:88107291-88108197:-|nuORF ENST00000309534.10_1_3:88107291-88108197:-|nuORF ENST00000309534.10_1_3:88107291-88108197:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5582580566406 3 381.225821 1140.65563 NaN NaN NaN NaN NaN NaN NaN 21.636 1 21.649 21.149 22.149 0.013796 0 0 0 0.85737 1 11091 11091 0.26902 0 1 27248 11663 18250 18598 32167 32167 0.09093140941990896 KLFQALEEV 9 Unmodified _KLFQALEEV_ 0 0 0 REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1 REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.800537109375 2 538.802957 1075.59136 0.23587 0.00012709 -1.5715 -0.00084674 -1.3357 -0.00071966 538.802204725145 64.017 0.26775 64.017 63.879 64.147 0 18 10 2 0 0 0 0.25681 1 35691 35691 19.257 0 1 1309000 + 27249 29584 18251 18599 32168 32168 0.05658896274508152 KLFQGQLVL 9 Unmodified _KLFQGQLVL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3238525390625 2 523.32386 1044.63317 0.89531 0.00046854 -0.24108 -0.00012616 0.65423 0.00034237 523.3237833106263 66.5 0.30332 66.509 66.361 66.665 0.0095596 37 14 3 0 0 0 0.026094 1 36544 36544 57.471 9.1255 1 21758000 27250 6882 18252 18600 32169 32169 0.1126349675369056 KLFRRYRSA 9 Unmodified _KLFRRYRSA_ 0 0 0 REV__ENSG00000137288|ENST00000607484|UQCC2 REV__ENSG00000137288|ENST00000607484|UQCC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2503051757812 3 399.57188 1195.69381 0.58488 0.0002337 2.0238 0.00080866 2.6087 0.0010424 399.5727336070784 47.38 0.2402 47.342 47.237 47.477 -0.038647 17 10 2 0 0 0 0.21835 1 25514 25514 2.2828 0.3764 1 2339200 + 27251 20233 18253 18601 32170 32170 0.10379026856662676 KLFSELPLA 9 Unmodified _KLFSELPLA_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.302734375 2 509.302593 1016.59063 0.82602 0.0004207 -0.52328 -0.00026651 0.30274 0.00015419 509.3026765215564 94.881 0.49385 88.705 88.527 89.021 -6.1757 61 27 3 0 0 0 0.14 1 62847 62847 29.082 5.061 1 27506000 27252 1551 18254 18602 32171 32171 0.08300101625457046 KLFSNPKSY 9 Unmodified _KLFSNPKSY_ 0 0 0 REV__nc|ENSG00000173083|Q9Y251-2|HPSE REV__nc|ENSG00000173083|Q9Y251-2|HPSE MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2686767578125 2 542.295299 1082.57605 1.3188 0.00071518 -4.1452 -0.0022479 -2.8264 -0.0015327 542.2933133815588 101.01 0.12087 94.837 94.748 94.869 -6.1757 9 6 2 0 0 0 0.25681 1 67665 67665 19.257 2.1441 1 10166000 + 27253 29788 18255 18603 32172 32172 0.038060294773458736 KLFTFLPLPE 10 Unmodified _KLFTFLPLPE_ 0 0 0 ENSG00000139131|ENST00000324868|YARS2 ENSG00000139131|ENST00000324868|YARS2 ENSG00000139131|ENST00000324868|YARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2385559082031 3 402.237392 1203.69035 1.273 0.00051205 -0.015573 -6.2641E-06 1.2574 0.00050578 402.23730862595875 20.752 0.91804 18.059 17.608 18.526 -2.693 141 53 3 0 0 0 0.54083 1 10929 10929 14.218 1.3622 1 7149900 27254 5124 18256 18604 32173 32173 0.09664919239412484 KLFTHLRQDLE 11 Unmodified _KLFTHLRQDLE_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.807861328125 3 467.261259 1398.76195 NaN NaN NaN NaN NaN NaN NaN 104.22 1 104.17 103.67 104.67 -0.048737 0 0 0 0.94201 1 57866 57866 0.36667 0 1 27255 669 18257 18605 32174 32174 0.07851806925987148 KLFTNDCIFL 10 Carbamidomethyl (C) _KLFTNDC(Carbamidomethyl (C))IFL_ KLFTNDC(1)IFL KLFTNDC(68)IFL 0 1 0 nc|ENSG00000140280|Q8IV50-2|LYSMD2;ENSG00000140280|ENST00000267838|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8267822265625 2 635.828649 1269.64274 1.1775 0.00074866 -2.9461 -0.0018732 -1.7687 -0.0011246 635.8263794451664 97.678 0.14989 91.502 91.403 91.553 -6.1757 15 8 2 0 0 0 0.03037 1 64721 64721 67.838 14.434 1 39000000 27256 5217 18258 18606 32175 32175 536 0.018708969769022588 KLFTQILRV 9 Unmodified _KLFTQILRV_ 0 0 0 ENSG00000126458|ENST00000246792|RRAS ENSG00000126458|ENST00000246792|RRAS ENSG00000126458|ENST00000246792|RRAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3587036132812 2 559.358234 1116.70191 1.4373 0.00080395 0.20413 0.00011418 1.6414 0.00091814 559.3582680275931 94.275 0.12123 88.1 88.03 88.151 -6.1757 10 6 2 0 0 0 0.01958 1 62453 62453 63.961 32.692 1 4457600 27257 3949 18259 18607 32176 32176 0.1482316105341397 KLGCKSRP 8 Unmodified _KLGCKSRP_ 0 0 0 chr19:5896997-5901386|45|10.33|0.0|19.98|-|1|NDUFA11,None|1 chr19:5896997-5901386|45|10.33|0.0|19.98|-|1|NDUFA11,None|1 chr19:5896997-5901386|45|10.33|0.0|19.98|-|1|NDUFA11,None|1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2410888671875 2 444.75783 887.501106 1.1279 0.00050164 -0.56351 -0.00025063 0.56438 0.00025101 444.7578992730653 57.71 0.28205 57.644 57.513 57.795 -0.066036 23 13 2 0 0 0 8.7369 1 31489 31489 4.756 1.8668 1 4141100 27258 99 18260 18608 32177 32177 0.05285568465103552 KLGDLFFRV 9 Unmodified _KLGDLFFRV_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-4|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8213500976562 2 547.821484 1093.62842 0.29203 0.00015998 -0.87049 -0.00047687 -0.57847 -0.0003169 547.8209235757798 69.97 0.38268 70.001 69.826 70.209 0.030914 43 19 3 0 0 0 0.013609 1 38468 38468 70.332 38.027 1 7650200 27259 7477 18261 18609 32178 32178 0.08534612610947079 KLGETADGPRY 11 Unmodified _KLGETADGPRY_ 0 0 0 REV__ENST00000422481.5_1_3:14565113-14565278:-|nuORF REV__ENST00000422481.5_1_3:14565113-14565278:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3103637695312 2 603.809302 1205.60405 0.011365 6.8623E-06 -0.11365 -6.8622E-05 -0.10228 -6.176E-05 603.8094842304937 36.072 0.39053 36.072 35.878 36.269 0 57 19 4 0 0 0 0.57006 1 19164 19164 21.537 9.8967 1 20354000 + 27260 26857 18262 18610 32179 32179 0.009473076667518399 KLGGKGQG 8 Unmodified _KLGGKGQG_ 0 0 0 REV__nc|ENSG00000172819|P13631-3|RARG REV__nc|ENSG00000172819|P13631-3|RARG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.7232971191406 2 372.72177 743.428987 NaN NaN NaN NaN NaN NaN NaN 61.045 1 60.556 60.056 61.056 -0.48932 0 0 0 0.97444 1 33247 33247 2.3027 0 1 + 27261 22678 18263 18611 32180 32180 0.04700977383049576 KLGSVPVTV 9 Unmodified _KLGSVPVTV_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.281982421875 2 450.28166 898.548768 -0.059126 -2.6623E-05 0.38561 0.00017363 0.32648 0.00014701 450.28178311073134 45.011 0.22574 45.011 44.906 45.132 0 23 11 3 0 0 0 0.011671 1 24492 24492 75.761 14.403 1 13687000 27262 10089 18264 18612 32181 32181 0.09543545936946884 KLGSVPVTV 9 Unmodified _KLGSVPVTV_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2803955078125 2 450.28166 898.548768 NaN NaN NaN NaN NaN NaN NaN 45.231 1 44.907 44.407 45.407 -0.32425 0 0 0 0.010041 1 24154 24154 92.653 17.724 1 27263 10089 18264 18612 32182 32182 0.09543545936946884 KLGSVPVTV 9 Unmodified _KLGSVPVTV_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2818603515625 2 450.28166 898.548768 1.1865 0.00053425 -0.11449 -5.1551E-05 1.072 0.0004827 450.281594362499 50.937 0.48934 45.288 44.99 45.479 -5.649 67 29 3 0 0 0 0.012668 3 31867 31867;31989;32123 72.968 16.791 1 180230000 27264 10089 18264 18612 32183;32184;32185 32183 0.09543545936946884 KLHAMLSMI 9 Unmodified _KLHAMLSMI_ 0 0 0 ENSG00000141258|ENST00000268989|SGSM2;ENST00000575367.1_1_17:2270608-2274710:+|nuORF ENSG00000141258|ENST00000268989|SGSM2 ENSG00000141258|ENST00000268989|SGSM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2930908203125 2 522.290648 1042.56674 1.2075 0.00063065 1.0247 0.00053521 2.2322 0.0011659 522.2910574792948 95.158 0.76157 88.983 88.573 89.334 -6.1757 78 42 2 0 0 0 0.03568 3 62966 62966;63085;63203 52.268 37.974 1 16953000 27265 5310 18265 18613 32186;32187;32188 32186 0.04716221595799652 KLHDEDLLL 9 Unmodified _KLHDEDLLL_ 0 0 0 nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE nc|ENSG00000159921|Q9Y223-4|GNE nc|ENSG00000159921|Q9Y223-4|GNE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.873046875 3 365.873001 1094.59717 0.2074 7.5883E-05 0.1627 5.9529E-05 0.37011 0.00013541 365.8730560818126 47.234 0.28135 47.234 47.103 47.384 0 21 12 2 0 0 0 0.094149 1 25855 25855 32.037 4.8142 1 3170800 27266 6680 18266 18614 32189 32189 0.05365994786188821 KLHDINAQL 9 Unmodified _KLHDINAQL_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1 nc|ENSG00000100280|Q10567-4|AP1B1 nc|ENSG00000100280|Q10567-4|AP1B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2990112304688 2 526.298373 1050.58219 0.83179 0.00043777 0.27063 0.00014243 1.1024 0.0005802 526.2987446424665 34.436 0.3113 30.341 30.146 30.457 -4.0951 31 17 2 0 0 0 0.0090524 2 19772 19772;19894 85.642 25.568 1 18597000 27267 1783 18267 18615 32190;32191 32190 0.058925477088678235 KLHDVEHVL 9 Unmodified _KLHDVEHVL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8732604980469 3 363.873224 1088.59784 -0.72414 -0.00026349 0.74548 0.00027126 0.021344 7.7667E-06 363.87344558647715 27.916 0.23938 27.916 27.761 28.001 0 27 11 3 0 0 0 0.039985 1 14368 14368 38.615 23.366 1 9060800 27268 3699 18268 18616 32192 32192 0.057088342259021374 KLHDVEHVL 9 Unmodified _KLHDVEHVL_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENST00000548984.1_1_12:53691573-53691735:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8742980957031 3 363.873224 1088.59784 1.2111 0.0004407 0.84012 0.0003057 2.0513 0.0007464 363.8736674912158 31.625 0.3651 27.929 27.757 28.122 -3.6958 32 19 2 0 0 0 0.15471 1 17875 17875 20.581 5.3325 1 51848000 27269 3699 18268 18616 32193 32193 0.057088342259021374 KLHDVELHQV 10 Unmodified _KLHDVELHQV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.55908203125 3 406.559417 1216.65642 NaN NaN NaN NaN NaN NaN NaN 25.022 1 25.022 24.522 25.522 0 0 0 0 0.97592 1 12812 12812 1.5923 0.48253 1 27270 1011 18269 18617 32194 32194 0.056758908003757824 KLHDVELHQV 10 Unmodified _KLHDVELHQV_ 0 0 0 nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF nc|ENSG00000069966|O14775-3|GNB5 nc|ENSG00000069966|O14775-3|GNB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5481567382812 3 406.559417 1216.65642 0.6286 0.00025556 1.4059 0.00057156 2.0344 0.00082712 406.56015121280865 28.166 0.19886 25.018 24.878 25.077 -3.1482 17 10 2 0 0 0 0.17714 1 15607 15607 25.997 15.098 1 6189000 27271 1011 18269 18617 32195 32195 0.056758908003757824 KLHFWEER 8 Unmodified _KLHFWEER_ 0 0 0 REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5364685058594 3 382.201452 1143.58253 0.61095 0.00023351 1.4476 0.00055329 2.0586 0.0007868 382.20209820215047 72.405 0.26844 71.929 71.752 72.02 -0.47609 29 12 4 0 0 0 0.79783 1 39608 39608 5.7319 5.7319 1 2577700 + 27272 28919 18270 18618 32196 32196 0.016479674286983936 KLHFWEER 8 Unmodified _KLHFWEER_ 0 0 0 REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.201452 1143.58253 0.53947 0.00020619 2.9806 0.0011392 3.5201 0.0013454 382.2024184254574 71.786 0.16576 71.825 71.748 71.914 0.039024 -0.051935 0.0015423 NaN 5.7319 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 544480 + 27273 28919 18270 18618 0.016479674286983936 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2945251464844 2 497.295633 992.576714 -0.29449 -0.00014645 -0.11518 -5.7279E-05 -0.40967 -0.00020373 497.2956203568044 35.132 0.17339 35.132 35.016 35.19 0 14 8 2 0 0 0 0.031062 1 18549 18549 54.774 3.9185 1 3056300 27274 8379;16392 18271 18619 32197 32197 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2964477539062 2 497.295633 992.576714 -0.37893 -0.00018844 0.56875 0.00028284 0.18982 9.4395E-05 497.29590814335745 35.214 0.23369 34.992 34.873 35.107 -0.2224 25 10 3 0 0 0 0.031062 1 18417 18417 54.774 12.679 1 7047300 27275 8379;16392 18271 18619 32198 32198 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.295654296875 2 497.295633 992.576714 0.1384 6.8827E-05 1.0983 0.0005462 1.2367 0.00061502 497.29618371291235 34.958 0.20379 34.985 34.878 35.082 0.027401 13 8 2 0 0 0 0.047196 1 18459 18459 46.021 19.137 1 1804000 27276 8379;16392 18271 18619 32199 32199 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MSMS AL20221201_MKP_PDAC_01 4 497.2961120605469 2 497.295633 992.576714 NaN NaN NaN NaN NaN NaN NaN 39.284 1 34.833 34.333 35.333 -4.4509 0 0 0 0.18753 1 23301 23301 32.305 0.18852 1 27277 8379;16392 18271 18619 32200 32200 0.0801286891704649 KLHGVNINV 9 Unmodified _KLHGVNINV_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4 ENSG00000173933|ENST00000310092|RBM4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.295633 992.576714 -0.37893 -0.00018844 0.56875 0.00028284 0.18982 9.4395E-05 497.29590814335745 35.214 0.23369 34.992 34.873 35.107 -0.2224 -0.044671 3.2065E-05 NaN 54.774 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7047300 27278 8379;16392 18271 18619 0.0801286891704649 KLHIAKKLRM 10 Unmodified _KLHIAKKLRM_ 0 0 0 REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 MSMS AL20221201_MKP_PDAC_01 4 619.4046630859375 2 619.39991 1236.78527 NaN NaN NaN NaN NaN NaN NaN 106.63 1 100.45 99.953 100.95 -6.1757 0 0 0 1.0024 1 71366 71366 0.40072 0 1 + 27279 22348 18272 18620 32201 32201 0.1763457422960073 KLHINHNNL 9 Unmodified _KLHINHNNL_ 0 0 0 ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM ENSG00000139329|ENST00000266718|LUM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8091430664062 2 551.809439 1101.60433 NaN NaN NaN NaN NaN NaN NaN 79.187 1 79.242 78.742 79.742 0.05497 0 0 0 0.7453 1 43746 43746 7.9102 1.5561 1 27280 5147 18273 18621 32202 32202 0.05758772177273386 KLHLILDYV 9 Unmodified _KLHLILDYV_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.89404296875 3 371.893737 1112.65938 0.53133 0.0001976 0.32599 0.00012123 0.85732 0.00031883 371.89375794097595 67.094 0.29942 67.112 66.939 67.239 0.018028 23 14 2 0 0 0 0.13231 1 36812 36812 29.841 12.728 1 3478500 27281 6846 18274 18622 32203 32203 0.10755765925182459 KLHLILDYV 9 Unmodified _KLHLILDYV_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.338134765625 2 557.336967 1112.65938 1.4839 0.00082701 0.28933 0.00016125 1.7732 0.00098826 557.3375633507588 98.095 0.11024 91.919 91.875 91.985 -6.1757 9 6 2 0 0 0 0.11005 1 65045 65045 41.84 0 1 16371000 27282 6846 18274 18622 32204 32204 0.10755765925182459 KLHLILDYV 9 Unmodified _KLHLILDYV_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MSMS AL20221201_MKP_PDAC_01 4 371.8941345214844 3 371.893737 1112.65938 NaN NaN NaN NaN NaN NaN NaN 98.105 1 91.929 91.429 92.429 -6.1757 0 0 0 0.16551 1 65036 65036 34.932 7.3033 1 27283 6846 18274 18622 32205 32205 0.10755765925182459 KLHQMIDEL 9 Unmodified _KLHQMIDEL_ 0 0 0 REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.2199401855469 3 376.202353 1125.58523 1.6788 0.00063156 0.18911 7.1143E-05 1.8679 0.00070271 376.20244500588984 20.83 0.18914 18.137 18.036 18.225 -2.693 20 11 2 0 0 0 0.20727 1 11141 11141 4.897 0 1 1780800 + 27284 19188 18275 18623 32206 32206 0.027460547713417327 KLHVILIRPL 10 Unmodified _KLHVILIRPL_ 0 0 0 REV__ENSG00000134588|ENST00000511190|USP26 REV__ENSG00000134588|ENST00000511190|USP26 MSMS AL20221201_MKP_PDAC_01 4 601.4134521484375 2 601.410801 1200.80705 NaN NaN NaN NaN NaN NaN NaN 104.85 1 98.673 98.173 99.173 -6.1757 0 0 0 1.0061 1 70185 70185 0 0 1 + 27285 19996 18276 18624 32207 32207 0.21467702249856302 KLHYIFWNYHF 11 Unmodified _KLHYIFWNYHF_ 0 0 0 REV__DHX36|p.L886F|1|0.15|ENSG00000174953|chr3:154277630-154277630|G/A|missense_variant REV__DHX36|p.L886F|1|0.15|ENSG00000174953|chr3:154277630-154277630|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.6008911132812 3 523.266345 1566.7772 1.2433 0.00065059 -0.43599 -0.00022814 0.80734 0.00042245 523.2667819095014 86.208 0.47337 80.032 79.81 80.283 -6.1757 65 25 3 0 0 0 0.71036 1 56790 56790 1.3296 0 1 27326000 + 27286 16907 18277 18625 32208 32208 0.016487185138430505 KLHYVVTEV 9 Unmodified _KLHYVVTEV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3097534179688 2 544.310949 1086.60735 0.44489 0.00024216 -0.83155 -0.00045262 -0.38666 -0.00021046 544.3099516213359 36.19 0.19492 36.19 36.095 36.29 0 14 9 2 0 0 0 0.19127 1 19217 19217 24.021 5.8742 1 2518100 27287 9805 18278 18626 32209 32209 0.06750602511442594 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2203674316406 3 370.220624 1107.64004 -0.49393 -0.00018286 -0.28552 -0.0001057 -0.77944 -0.00028857 370.2205087705411 33.578 0.29402 33.578 33.489 33.783 0 59 27 3 0 0 0 0.011211 2 17593 17593;17700 77.049 45.011 1 25258000 27288 9101;16441 18279 18627 32210;32211 32210 0.09052809634272307 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.220703125 3 370.220624 1107.64004 -0.26418 -9.7806E-05 0.91288 0.00033797 0.6487 0.00024016 370.22077106914753 33.698 0.33041 33.539 33.369 33.7 -0.15918 35 13 4 0 0 0 0.047194 1 17583 17583 46.022 22.002 1 5377000 27289 9101;16441 18279 18627 32212 32212 0.09052809634272307 KLIDDVHRL 9 Unmodified _KLIDDVHRL_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2210388183594 3 370.220624 1107.64004 1.5961 0.00059092 -0.1363 -5.0461E-05 1.4598 0.00054046 370.22054696297397 38.034 0.48068 33.665 33.419 33.9 -4.3689 73 28 4 0 0 0 0.033747 2 22303 22303;22431 53.317 25.688 1 111960000 27290 9101;16441 18279 18627 32213;32214 32213 0.09052809634272307 KLIDETQDMLL 11 Oxidation (M) _KLIDETQDM(Oxidation (M))LL_ KLIDETQDM(1)LL KLIDETQDM(55)LL 0 0 1 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.847412109375 2 667.847235 1333.67992 0.23608 0.00015767 -0.62236 -0.00041564 -0.38627 -0.00025797 667.8468599998987 53.361 0.29132 53.361 53.195 53.486 0 36 12 4 0 0 0 0.029988 1 29529 29529 55.235 34.781 1 9753900 27291 4011 18280 18628 32215 32215 713 0.026425237320154338 KLIDGQVIQL 10 Unmodified _KLIDGQVIQL_ 0 0 0 nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.844970703125 2 563.845156 1125.67576 0.37163 0.00020954 -0.31341 -0.00017671 0.058219 3.2826E-05 563.8449636718908 61.731 0.31284 61.244 61.074 61.387 -0.48764 40 14 4 0 0 0 0.63668 1 33689 33689 14.405 1.3629 1 9439400 27292 7495 18281 18629 32216 32216 0.11794847091277916 KLIDLSQVMYL 11 Oxidation (M) _KLIDLSQVM(Oxidation (M))YL_ KLIDLSQVM(1)YL KLIDLSQVM(77)YL 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.8706665039062 2 669.870514 1337.72647 0.46618 0.00031228 -0.71618 -0.00047975 -0.24999 -0.00016746 669.8699226350587 75.714 0.34158 75.762 75.649 75.99 0.047943 38 15 3 0 0 0 0.0041032 1 41762 41762 76.825 25.195 1 7234800 27293 9187 18282 18630 32217 32217 1529 0.07112008353965393 KLIDLSQVMYL 11 Oxidation (M) _KLIDLSQVM(Oxidation (M))YL_ KLIDLSQVM(1)YL KLIDLSQVM(76)YL 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.8701171875 2 669.870514 1337.72647 1.1394 0.00076322 -1.1082 -0.00074235 0.03116 2.0873E-05 669.8695560185021 95.719 0.24438 89.543 89.399 89.644 -6.1757 34 15 3 0 0 0 0.004841 1 63363 63363 75.571 49.302 1 25659000 27294 9187 18282 18630 32218 32218 1529 0.07112008353965393 KLIDLSQVMYL 11 Oxidation (M) _KLIDLSQVM(Oxidation (M))YL_ 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 669.870514 1337.72647 0.17345 0.00011619 -0.046541 -3.1177E-05 0.12691 8.501E-05 670.3712455644588 76.34 0.14502 75.86 75.764 75.909 -0.47945 0.049128 0.00083852 NaN 76.825 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 646640 27295 9187 18282 18630 1529 0.07112008353965393 KLIDRLQILQR 11 Unmodified _KLIDRLQILQR_ 0 0 0 REV__nc|ENSG00000151693|O43150-2|ASAP2 REV__nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.44482421875 2 698.44336 1394.87217 1.1532 0.00080542 0.74518 0.00052047 1.8983 0.0013259 698.4437239645896 104.99 0.2006 98.81 98.705 98.906 -6.1757 64 16 6 0 0 0 0.74244 1 70244 70244 0.26902 0 1 1507599999.9999998 + 27296 21084 18283 18631 32219 32219 0.19052651985043667 KLIEELETL 9 Unmodified _KLIEELETL_ 0 0 0 ENST00000374721.7_1_10:35500449-35500728:+|nuORF;nc|ENSG00000095794|Q03060-11|CREM;nc|ENSG00000095794|Q03060|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-22|CREM;nc|ENSG00000095794|Q03060-12|CREM;nc|ENSG00000095794|Q03060-7|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-30|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-13|CREM;nc|ENSG00000095794|Q03060-14|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-28|CREM;nc|ENSG00000095794|Q03060-29|CREM;nc|ENSG00000095794|Q03060-10|CREM;nc|ENSG00000095794|Q03060-27|CREM;nc|ENSG00000095794|Q03060-1|CREM ENST00000374721.7_1_10:35500449-35500728:+|nuORF ENST00000374721.7_1_10:35500449-35500728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3161010742188 2 544.315897 1086.61724 0.18512 0.00010077 0.55633 0.00030282 0.74145 0.00040359 544.3162239585305 62.858 0.33016 62.858 62.655 62.985 0 34 13 3 0 0 0 0.0090524 1 35041 35041 85.642 20.406 1 6303600 27297 12455 18284 18632 32220 32220 0.07739745726144065 KLIEIWETL 9 Unmodified _KLIEIWETL_ 0 0 0 REV__ENSG00000205339|ENST00000379719|IPO7 REV__ENSG00000205339|ENST00000379719|IPO7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.8289184570312 3 382.225264 1143.65396 1.4382 0.00054973 0.61258 0.00023414 2.0508 0.00078388 382.2256246557116 32.44 0.37826 28.584 28.418 28.796 -3.8562 44 20 3 0 0 0 0.19994 1 18381 18381 2.4985 0 1 12335000 + 27298 24223 18285 18633 32221 32221 0.08788042342712288 KLIEKLDIKL 10 Unmodified _KLIEKLDIKL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.9364013671875 3 404.935713 1211.78531 0.58494 0.00023686 0.0023383 9.4687E-07 0.58728 0.00023781 404.9357273449721 52.349 0.23368 51.915 51.77 52.003 -0.43367 26 11 3 0 0 0 0.047566 1 28272 28272 59.496 7.303 1 3359300 27299 7651 18286 18634 32222 32222 0.18788852710599713 KLIEKLDIKL 10 Unmodified _KLIEKLDIKL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.9356384277344 3 404.935713 1211.78531 0.13316 5.3923E-05 1.4339 0.00058064 1.5671 0.00063456 404.9359622690253 52.032 0.49542 51.973 51.611 52.107 -0.058914 53 23 4 0 0 0 0.56707 1 28239 28239 12.856 4.5695 1 31469000 27300 7651 18286 18634 32223 32223 0.18788852710599713 KLIEKLDIKL 10 Unmodified _KLIEKLDIKL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.9359741210938 3 404.935713 1211.78531 1.3204 0.00053466 0.086355 3.4968E-05 1.4067 0.00056963 404.93565496228297 90.862 0.35051 84.686 84.56 84.911 -6.1757 64 20 4 0 0 0 0.0014479 2 60022 60022;60178 111.33 21.991 1 74078000 27301 7651 18286 18634 32224;32225 32224 0.18788852710599713 KLIEKLDIKL 10 Unmodified _KLIEKLDIKL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8998413085938 2 606.899931 1211.78531 0.9026 0.00054779 0.15058 9.1388E-05 1.0532 0.00063918 606.8996945448515 90.868 0.2459 84.693 84.577 84.823 -6.1757 21 14 2 0 0 0 0.0016855 1 60047 60047 112.95 45.865 1 13166000 27302 7651 18286 18634 32226 32226 0.18788852710599713 KLILLITQV 9 Unmodified _KLILLITQV_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8572998046875 2 520.857535 1039.70052 0.18011 9.3813E-05 0.94225 0.00049078 1.1224 0.00058459 520.8579495326754 79.514 0.3567 79.569 79.363 79.72 0.054977 34 13 3 0 0 0 0.014417 2 43892 43892;43991 69.105 27.265 1 8189500 27303 7074 18287 18635 32227;32228 32227 0.18225526964647543 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.833984375 2 511.83406 1021.65357 0.5992 0.00030669 -0.53346 -0.00027304 0.065746 3.3651E-05 511.83380032943853 73.845 0.37822 73.889 73.672 74.05 0.043983 46 17 4 0 0 0 0.020973 2 40647 40647;40752 62.573 34.944 1 23455000 27304 3269;553 18288 18636 32229;32230 32229 0.14360667413507144 KLIPQLPTL 9 Unmodified _KLIPQLPTL_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8339538574219 2 511.83406 1021.65357 1.1003 0.00056316 0.28015 0.00014339 1.3804 0.00070655 511.8343802471117 95.952 0.31448 89.776 89.63 89.944 -6.1757 49 18 3 0 0 0 0.009483 1 63523 63523 81.89 40.051 1 99920000 27305 3269;553 18288 18636 32231 32231 0.14360667413507144 KLIQLQFEV 9 Unmodified _KLIQLQFEV_ 0 0 0 ENST00000393179.8_1_12:89885842-89919131:-|nuORF ENST00000393179.8_1_12:89885842-89919131:-|nuORF ENST00000393179.8_1_12:89885842-89919131:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3359985351562 2 559.334424 1116.6543 0.41351 0.00023129 1.2198 0.00068226 1.6333 0.00091355 559.3351938552848 72.517 0.38342 72.558 72.399 72.782 0.041725 38 17 3 0 0 0 0.05447 1 39927 39927 43.858 16.975 1 5057900 27306 12697 18289 18637 32232 32232 0.10063462062544204 KLIQLQFEV 9 Unmodified _KLIQLQFEV_ 0 0 0 ENST00000393179.8_1_12:89885842-89919131:-|nuORF ENST00000393179.8_1_12:89885842-89919131:-|nuORF ENST00000393179.8_1_12:89885842-89919131:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3353881835938 2 559.334424 1116.6543 1.3368 0.0007477 0.79457 0.00044443 2.1313 0.0011921 559.3350169512696 95.305 0.41057 89.13 88.82 89.23 -6.1757 49 22 3 0 0 0 0.031062 1 63086 63086 54.774 14.816 1 48768000 27307 12697 18289 18637 32233 32233 0.10063462062544204 KLIQNVFEI 9 Unmodified _KLIQNVFEI_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3264770507812 2 552.326599 1102.63865 0.4511 0.00024915 -0.92114 -0.00050877 -0.47004 -0.00025962 552.3261387302479 70.706 0.19513 70.228 70.173 70.368 -0.47735 12 9 2 0 0 0 0.30562 1 38688 38688 16.942 5.302 1 949280 27308 1025 18290 18638 32234 32234 0.09143175545523263 KLIQNVFEI 9 Unmodified _KLIQNVFEI_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 552.326599 1102.63865 0.50189 0.00027721 0.9815 0.00054211 1.4834 0.00081932 552.326719665814 70.152 0.21773 70.187 70.094 70.312 0.035507 -0.020517 0.0018146 NaN 16.942 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1970200 27309 1025 18290 18638 0.09143175545523263 KLISELQKL 9 Unmodified _KLISELQKL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.342041015625 2 536.342249 1070.66995 NaN NaN NaN NaN NaN NaN NaN 45.888 1 45.564 45.064 46.064 -0.32425 0 0 0 0.011221 1 24538 24538 107.1 24.57 1 27310 1295;14411 18291 18639 32235 32235 0.1374374857962266 KLISELQKL 9 Unmodified _KLISELQKL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20221201_MKP_PDAC_01 4 357.8981018066406 3 357.897258 1070.66995 NaN NaN NaN NaN NaN NaN NaN 82.673 1 76.497 75.997 76.997 -6.1757 0 0 0 0.091025 1 54316 54316 35.612 10.621 1 27311 1295;14411 18291 18639 32236 32236 0.1374374857962266 KLISELQKL 9 Unmodified _KLISELQKL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20221201_MKP_PDAC_01 4 357.8976440429688 3 357.897258 1070.66995 NaN NaN NaN NaN NaN NaN NaN 82.881 1 76.705 76.205 77.205 -6.1757 0 0 0 0.16996 1 54467 54467 26.021 11.615 1 27312 1295;14411 18291 18639 32237 32237 0.1374374857962266 KLITTMSKTL 10 Unmodified _KLITTMSKTL_ 0 0 0 REV__ENSG00000088387|ENST00000682017|DOCK9 REV__ENSG00000088387|ENST00000682017|DOCK9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3395385742188 2 568.341392 1134.66823 NaN NaN NaN NaN NaN NaN NaN 49.694 1 49.645 49.145 50.145 -0.048824 0 0 0 0.026837 1 26860 26860 87.258 18.153 1 + 27313 17805 18292 18640 32238 32238 0.10628371499342393 KLIVKEYEV 9 Unmodified _KLIVKEYEV_ 0 0 0 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 ENSG00000189241|ENST00000368608|TSPYL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8345336914062 2 560.834257 1119.65396 NaN NaN NaN NaN NaN NaN NaN 36.168 1 36.168 35.668 36.668 0 0 0 0 0.090869 1 19168 19168 45.74 20.749 1 27314 9737 18293 18641 32239 32239 0.09892042342698915 KLKAAKKKKK 10 Unmodified _KLKAAKKKKK_ 0 0 0 ENST00000484858.1_1_9:139701238-139702139:+|nuORF;ENST00000481601.5_1_9:139700881-139702139:+|nuORF;nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183 ENST00000484858.1_1_9:139701238-139702139:+|nuORF ENST00000484858.1_1_9:139701238-139702139:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.9265747070312 2 585.924075 1169.8336 NaN NaN NaN NaN NaN NaN NaN 22.483 1 22.5 22 23 0.01749 0 0 0 1.0061 1 11548 11548 0 0 1 27315 10425 18294 18642 32240 32240 0.25547391141139997 KLKDWHDK 8 Unmodified _KLKDWHDK_ 0 0 0 nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;nc|ENSG00000164574|Q86SR1-3|GALNT10 nc|ENSG00000164574|Q86SR1-2|GALNT10 nc|ENSG00000164574|Q86SR1-2|GALNT10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.8815307617188 3 357.197819 1068.57163 1.8407 0.00065748 -0.04519 -1.6142E-05 1.7955 0.00064134 357.19786515450124 20.691 0.37318 17.998 17.723 18.096 -2.693 27 22 2 0 0 0 8.7369 1 10894 10894 3.5965 1.6901 1 1815600 27316 7206 18295 18643 32241 32241 0.04008565054391511 KLKFVYPFL 9 Unmodified _KLKFVYPFL_ 0 0 0 REV__ENST00000272444.7_1_2:73989634-73989691:-|nuORF REV__ENST00000272444.7_1_2:73989634-73989691:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.854736328125 2 577.852253 1153.68995 NaN NaN NaN NaN NaN NaN NaN 106.33 1 100.15 99.65 100.65 -6.1757 0 0 0 0.85261 1 71177 71177 0.6015 0 1 + 27317 25148 18296 18644 32242 32242 0.11925544310224723 KLKFVYPFL 9 Unmodified _KLKFVYPFL_ 0 0 0 REV__ENST00000272444.7_1_2:73989634-73989691:-|nuORF REV__ENST00000272444.7_1_2:73989634-73989691:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.8541259765625 2 577.852253 1153.68995 NaN NaN NaN NaN NaN NaN NaN 106.52 1 100.35 99.848 100.85 -6.1757 0 0 0 0.85261 1 71300 71300 0.6015 0 1 + 27318 25148 18296 18644 32243 32243 0.11925544310224723 KLKKARALTI 10 Unmodified _KLKKARALTI_ 0 0 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 nc|ENSG00000123146|P48960-2|ADGRE5 MSMS AL20221201_MKP_PDAC_01 4 381.2654724121094 3 381.264164 1140.77066 NaN NaN NaN NaN NaN NaN NaN 104.14 1 97.962 97.462 98.462 -6.1757 0 0 0 0.9997 1 69761 69761 0.69767 0 1 27319 3685 18297 18645 32244 32244 0.2059082535311063 KLKKKAAT 8 Unmodified _KLKKKAAT_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.3063354492188 2 444.30547 886.596387 1.7117 0.00076054 0.55772 0.0002478 2.2695 0.0010083 444.30557808730856 108.48 2.2758 102.3 100.86 103.14 -6.1757 625 410 2 0 0 0 0.80992 1 71923 71923 0.69038 0.69038 1 12439000 27320 10115 18298 18646 32245 32245 0.14855244927775857 KLKKKLKQKEI 11 Unmodified _KLKKKLKQKEI_ 0 0 0 REV__ENSG00000106804|ENST00000223642|C5 REV__ENSG00000106804|ENST00000223642|C5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.4752197265625 2 692.474129 1382.93371 NaN NaN NaN NaN NaN NaN NaN 17.195 1 17.2 16.7 17.7 0.0050564 0 0 0 0.9435 1 8662 8662 0 0 1 + 27321 18538 18299 18647 32246 32246 0.2575558368430393 KLKKNKKNSH 10 Unmodified _KLKKNKKNSH_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;ENST00000450720.5_1_2:73899456-73899975:+|nuORF nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8814697265625 2 612.880396 1223.74624 1.1775 0.00072165 -0.79907 -0.00048973 0.3784 0.00023192 612.8797488918234 101.11 0.15488 94.933 94.85 95.004 -6.1757 26 8 4 0 0 0 0.72101 1 67764 67764 1.3295 1.3295 1 130790000 27322 3194 18300 18648 32247 32247 0.14331565199586294 KLKKRKPR 8 Unmodified _KLKKRKPR_ 0 0 0 ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2 ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1053.908447265625 1 1053.73674 1052.72947 0.14593 0.00015377 -1.8741 -0.0019749 -1.7282 -0.0018211 1054.7336267200171 57.027 0.12291 56.542 56.503 56.626 -0.48554 8 5 2 0 0 0 8.7369 1 31011 31011 0.69038 0 1 1578500 27323 8341 18301 18649 32248 32248 0.20521109104311108 KLKLCSKANVY 11 Unmodified _KLKLCSKANVY_ 0 0 0 ENSG00000108932|ENST00000580666|SLC16A6 ENSG00000108932|ENST00000580666|SLC16A6 ENSG00000108932|ENST00000580666|SLC16A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9126892089844 3 422.912803 1265.71658 1.1452 0.00048433 -2.6416 -0.0011172 -1.4964 -0.00063283 422.9117710972114 54.809 0.23827 48.944 48.848 49.087 -5.8653 22 14 2 0 0 0 0.631 1 34834 34834 9.7643 1.8189 1 13271000 27324 2617 18302 18650 32249 32249 0.0943486513924654 KLKMMAKME 9 Unmodified _KLKMMAKME_ 0 0 0 ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.7358093261719 3 370.534169 1108.58068 1.5067 0.00055827 0.43463 0.00016104 1.9413 0.00071932 370.5346823988251 81.046 0.081863 74.87 74.845 74.927 -6.1757 6 4 2 0 0 0 0.21893 1 53193 53193 0.23584 0 1 5614000 27325 7334 18303 18651 32250 32250 0.030731310325791128 KLKPRLRAVHG 11 Unmodified _KLKPRLRAVHG_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.9104614257812 2 637.91203 1273.80951 NaN NaN NaN NaN NaN NaN NaN 104.41 1 104.36 103.86 104.86 -0.048737 0 0 0 0.94301 1 57971 57971 0.35063 0 1 27326 778 18304 18652 32251 32251 0.18355550707474322 KLKTKALEPPA 11 Unmodified _KLKTKALEPPA_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MSMS AL20221201_MKP_PDAC_01 4 399.2518005371094 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 5.3541 1 2.8721 2.3721 3.3721 -2.482 0 0 0 0.94337 1 2719 2719 0.094841 0 1 27327 1425 18305 18653 32252 32252 0.14403109016689086 KLKTKALEPPA 11 Unmodified _KLKTKALEPPA_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MSMS AL20221201_MKP_PDAC_01 4 399.2511291503906 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 8.321 1 5.8391 5.3391 6.3391 -2.482 0 0 0 0.94337 1 4200 4200 0.094841 0 1 27328 1425 18305 18653 32253 32253 0.14403109016689086 KLKTKALEPPA 11 Unmodified _KLKTKALEPPA_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MSMS AL20221201_MKP_PDAC_01 4 399.2514953613281 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 9.2993 1 6.8173 6.3173 7.3173 -2.482 0 0 0 0.94337 1 4692 4692 0.094841 0 1 27329 1425 18305 18653 32254 32254 0.14403109016689086 KLKTKALEPPA 11 Unmodified _KLKTKALEPPA_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MSMS AL20221201_MKP_PDAC_01 4 399.1756896972656 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 12.527 1 10.045 9.5449 10.545 -2.482 0 0 0 0.94337 1 6339 6339 0.094841 0 1 27330 1425 18305 18653 32255 32255 0.14403109016689086 KLKVNGTFP 9 Unmodified _KLKVNGTFP_ 0 0 0 REV__nc|ENSG00000057757|Q9GZP4-2|PITHD1 REV__nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3009643554688 2 502.300384 1002.58622 0.91577 0.00045999 0.36705 0.00018437 1.2828 0.00064436 502.3004254145497 64.251 0.28113 64.24 64.037 64.318 -0.010536 24 13 3 0 0 0 0.36964 1 35195 35195 13.906 0 1 2843100 + 27331 17307 18306 18654 32256 32256 0.08502637202570895 KLLAAILHL 9 Unmodified _KLLAAILHL_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3365478515625 2 496.33677 990.658987 0.91629 0.00045479 -0.019174 -9.5166E-06 0.89712 0.00044527 496.3366138028971 66.809 0.30759 66.827 66.654 66.961 0.018028 33 14 3 0 0 0 0.0089973 1 36627 36627 86.121 0 1 10883000 27332 7937;4935 18307 18655 32257 32257 0.16328390995977315 KLLAAILHL 9 Unmodified _KLLAAILHL_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3371276855469 2 496.33677 990.658987 0.4255 0.00021119 0.23279 0.00011554 0.65829 0.00032673 496.3369483214658 69.772 0.32565 69.803 69.611 69.937 0.030914 25 16 2 0 0 0 0.0086179 1 38364 38364 89.427 0 1 3470800 27333 7937;4935 18307 18655 32258 32258 0.16328390995977315 KLLAVIHEL 9 Unmodified _KLLAVIHEL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3314819335938 2 518.331685 1034.64882 0.16738 8.676E-05 0.13446 6.9695E-05 0.30184 0.00015646 518.3316569182572 54.131 0.23648 53.664 53.547 53.784 -0.46664 28 11 3 0 0 0 0.0086904 1 29321 29321 107.19 45.83 1 6707100 27334 9935 18308 18656 32259 32259 0.13287783270743603 KLLAVIHEL 9 Unmodified _KLLAVIHEL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.331298828125 2 518.331685 1034.64882 -0.24853 -0.00012882 -0.18749 -9.7184E-05 -0.43602 -0.000226 518.8333939347098 53.736 0.19663 53.672 53.613 53.809 -0.063423 21 13 2 0 0 0 0.0082661 1 29184 29184 92.491 31.134 1 6653300 27335 9935 18308 18656 32260 32260 0.13287783270743603 KLLAVIHEL 9 Unmodified _KLLAVIHEL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3317260742188 2 518.331685 1034.64882 0.72404 0.00037529 0.1791 9.2834E-05 0.90315 0.00046813 518.3319051662135 93.623 0.22186 87.447 87.348 87.57 -6.1757 28 12 3 0 0 0 0.00035873 1 61981 61981 147.06 58.156 1 48337000 27336 9935 18308 18656 32261 32261 0.13287783270743603 KLLDEAIQAV 10 Unmodified _KLLDEAIQAV_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.32177734375 2 550.321514 1098.62847 -0.44922 -0.00024722 0.92741 0.00051037 0.47819 0.00026316 550.3217884317173 55.486 0.28672 55.486 55.305 55.592 0 30 12 3 0 0 0 0.044673 2 30772 30772;30878 61.602 27.499 1 8127500 27337 1001;15373 18309 18657 32262;32263 32262 0.08310567820262804 KLLDEVTYL 9 Unmodified _KLLDEVTYL_ 0 0 0 ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2;ENST00000492633.5_1_1:60370173-60378128:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.310546875 2 547.310615 1092.60668 0.24198 0.00013244 -0.19215 -0.00010516 0.049836 2.7276E-05 547.3103766140939 64.466 0.48971 64.466 64.255 64.745 0 76 23 5 0 0 0 0.047788 1 35902 35902 45.7 13.394 1 28502000 27338 4633 18310 18658 32264 32264 0.0640776307170654 KLLDEVTYL 9 Unmodified _KLLDEVTYL_ 0 0 0 ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2;ENST00000492633.5_1_1:60370173-60378128:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3111572265625 2 547.310615 1092.60668 0.30681 0.00016792 0.72596 0.00039733 1.0328 0.00056525 547.3108242798312 64.909 0.38608 64.425 64.254 64.64 -0.48428 49 17 4 0 0 0 0.032796 1 35391 35391 53.833 13.875 1 10184000 27339 4633 18310 18658 32265 32265 0.0640776307170654 KLLDEVTYL 9 Unmodified _KLLDEVTYL_ 0 0 0 ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2;ENST00000492633.5_1_1:60370173-60378128:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 547.310615 1092.60668 0.8279 0.00045312 -0.50698 -0.00027748 0.32091 0.00017564 547.309971971043 64.388 0.19221 64.378 64.298 64.49 -0.010536 -0.044976 -0.0007914 NaN 53.833 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2087600 27340 4633 18310 18658 0.0640776307170654 KLLDIIKCF 9 Unmodified _KLLDIIKCF_ 0 0 0 REV__ENST00000437626.5_1_21:46645550-46645877:+|nuORF REV__ENST00000437626.5_1_21:46645550-46645877:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8242797851562 2 546.827921 1091.64129 -0.0067458 -3.6888E-06 -4.4203 -0.0024171 -4.427 -0.0024208 546.8248742800437 55.447 0.17715 55.378 55.238 55.415 -0.068741 12 8 2 0 0 0 0.30202 1 30114 30114 17.113 0.96379 1 1492300 + 27341 27042 18311 18659 32266 32266 0.09913307678812089 KLLDIRSYL 9 Unmodified _KLLDIRSYL_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2289733886719 3 374.229008 1119.66519 0.81275 0.00030415 -0.53027 -0.00019844 0.28248 0.00010571 374.5631386192129 66.675 0.30807 66.685 66.54 66.849 0.0095596 24 14 2 0 0 0 0.01958 1 36586 36586 59.052 15.071 1 7642400 27342 2094 18312 18660 32267 32267 0.11014864436833705 KLLDISELDMV 11 Oxidation (M) _KLLDISELDM(Oxidation (M))V_ KLLDISELDM(1)V KLLDISELDM(50)V 0 0 1 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF;ENST00000467661.5_1_4:1985048-1988196:-|nuORF ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MSMS AL20221201_MKP_PDAC_01 4 646.3442993164062 2 646.344329 1290.6741 NaN NaN NaN NaN NaN NaN NaN 93.085 1 86.909 86.409 87.409 -6.1757 0 0 0 0.10594 1 61590 61590 49.742 32.629 1 27343 9325 18313 18661 32268 32268 1537 0.04039425220321391 KLLDISELDMV 11 Unmodified _KLLDISELDMV_ 0 0 0 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF;ENST00000467661.5_1_4:1985048-1988196:-|nuORF ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MSMS AL20221201_MKP_PDAC_01 4 638.34716796875 2 638.346871 1274.67919 NaN NaN NaN NaN NaN NaN NaN 98.645 1 92.469 91.969 92.969 -6.1757 0 0 0 0.67846 1 65467 65467 17.863 3.9571 1 27344 9325 18313 18662 32269 32269 0.05283729082930222 KLLDLLEGLT 10 Unmodified _KLLDLLEGLT_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.5656127929688 3 372.228785 1113.66453 -0.22697 -8.4484E-05 0.9478 0.0003528 0.72084 0.00026832 372.5639530944183 55.623 0.18859 55.554 55.497 55.685 -0.068741 20 9 3 0 0 0 0.40136 1 30239 30239 14.218 4.0676 1 4423600 27345 6216 18314 18663 32270 32270 0.11224024997136439 KLLDLMPRL 9 Unmodified _KLLDLMPRL_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.89599609375 3 366.894972 1097.66309 1.9566 0.00071788 -2.0177 -0.00074029 -0.061077 -2.2409E-05 366.89468619357393 98.076 0.15227 91.9 91.8 91.952 -6.1757 14 9 2 0 0 0 0.024189 1 65021 65021 59.368 40.647 1 17089000 27346 5997 18315 18664 32271 32271 0.1181611242739109 KLLDLYRSL 9 Unmodified _KLLDLYRSL_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.839111328125 2 560.839874 1119.66519 1.2708 0.0007127 -0.9106 -0.0005107 0.36017 0.000202 560.8390111972743 66.678 0.24557 66.688 66.561 66.807 0.0095596 26 11 3 0 0 0 0.069655 1 36613 36613 40.239 0 1 9385000 + 27347 20368 18316 18665 32272 32272 0.11014864436833705 KLLDLYRSL 9 Unmodified _KLLDLYRSL_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.839874 1119.66519 1.2708 0.0007127 -0.9106 -0.0005107 0.36017 0.000202 560.8390111972743 66.678 0.24557 66.688 66.561 66.807 0.0095596 0 0 NaN 40.239 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9385000 + 27348 20368 18316 18665 0.11014864436833705 KLLDMRTI 8 Unmodified _KLLDMRTI_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.294921875 2 495.294245 988.573937 1.0471 0.00051864 -1 -0.00049531 0.047102 2.3329E-05 495.2939758875103 94.976 0.14286 88.801 88.748 88.891 -6.1757 12 7 2 0 0 0 0.50364 1 62924 62924 34.402 3.7652 1 8525800 27349 16275 18317 18666 32273 32273 0.07919277467874508 KLLDPEDISV 10 Unmodified _KLLDPEDISV_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8110961914062 2 564.810979 1127.6074 0.3533 0.00019955 0.11342 6.4061E-05 0.46672 0.00026361 564.8109899038463 59.035 0.38858 59.035 58.829 59.217 0 47 16 4 0 0 0 0.039874 1 32887 32887 63.227 21.388 1 19832000 27350 3108 18318 18667 32274 32274 0.048705577207556416 KLLDPEDISV 10 Unmodified _KLLDPEDISV_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 564.810979 1127.6074 0.4921 0.00027795 -0.18247 -0.00010306 0.30964 0.00017489 564.8107621428798 59.631 0.24667 59.141 58.968 59.214 -0.49079 0.053035 -0.0002362 NaN 63.227 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2280200 27351 3108 18318 18667 0.048705577207556416 KLLDQMPSL 9 Oxidation (M) _KLLDQM(Oxidation (M))PSL_ KLLDQM(1)PSL KLLDQM(76)PSL 0 0 1 ENSG00000138646|ENST00000264350|HERC5;ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7891845703125 2 530.788992 1059.56343 0.16765 8.8986E-05 -0.18525 -9.8328E-05 -0.017601 -9.3422E-06 530.7890963767734 43.445 0.26012 43.445 43.323 43.583 0 25 12 3 0 0 0 0.011671 1 23604 23604 75.761 35.804 1 7487400 27352 5078 18319 18668 32275 32275 934 0.03603250022774773 KLLDQMPSL 9 Oxidation (M) _KLLDQM(Oxidation (M))PSL_ KLLDQM(1)PSL KLLDQM(76)PSL 0 0 1 ENSG00000138646|ENST00000264350|HERC5;ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7892456054688 2 530.788992 1059.56343 0.029304 1.5554E-05 0.813 0.00043153 0.84231 0.00044709 530.7895085141645 44.426 0.15524 44.426 44.397 44.552 0 12 7 2 0 0 0 0.011671 1 24195 24195 75.761 33.921 1 7116000 27353 5078 18319 18668 32276 32276 934 0.03603250022774773 KLLDQMPSL 9 Unmodified _KLLDQMPSL_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5;ENST00000510223.5_1_4:89394995-89425581:+|nuORF;ENST00000502913.1_1_4:89394186-89425581:+|nuORF ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.791748046875 2 522.791535 1043.56852 0.07225 3.7772E-05 0.56703 0.00029644 0.63928 0.00033421 522.7918745198356 61.729 0.27245 61.241 61.052 61.325 -0.48764 24 12 2 0 0 0 0.032796 1 33590 33590 53.833 19.431 1 2774900 27354 5078 18319 18669 32277 32277 0.048475538854063416 KLLEAISSL 9 Unmodified _KLLEAISSL_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.29736328125 2 487.30005 972.585547 0.3244 0.00015808 -1.2841 -0.00062575 -0.95971 -0.00046767 487.29881324563445 61.716 0.22811 61.229 61.097 61.325 -0.48764 14 10 2 0 0 0 0.025842 1 33623 33623 57.722 12.022 1 1730000 27355 6477 18320 18670 32278 32278 0.09815797762848888 KLLEEICNL 9 Carbamidomethyl (C) _KLLEEIC(Carbamidomethyl (C))NL_ KLLEEIC(1)NL KLLEEIC(56)NL 0 1 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3082885742188 2 566.307549 1130.60055 0.9465 0.00053601 -0.63782 -0.0003612 0.30867 0.0001748 566.3074418697238 82.984 0.83669 76.808 76.288 77.125 -6.1757 79 47 3 0 0 0 0.029718 1 54643 54643 55.503 15.553 1 19967000 27356 1444 18321 18671 32279 32279 137 0.04046921568533435 KLLEEQGIFL 10 Unmodified _KLLEEQGIFL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.345947265625 2 595.344989 1188.67542 -0.17172 -0.00010223 1.3649 0.00081258 1.1932 0.00071035 595.3457388785104 70.53 0.33058 70.53 70.356 70.686 0 42 13 4 0 0 0 0.043225 1 39275 39275 61.602 12.048 1 5939100 27357 4011 18322 18672 32280 32280 0.08863427371420585 KLLEEQGIFL 10 Unmodified _KLLEEQGIFL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3451538085938 2 595.344989 1188.67542 0.51398 0.00030599 -0.09503 -5.6575E-05 0.41895 0.00024942 595.3449480505909 70.94 0.41447 70.462 70.268 70.682 -0.47735 62 18 5 0 0 0 0.03037 2 38863 38759;38863 67.838 25.883 1 21172000 27358 4011 18322 18672 32281;32282 32282 0.08863427371420585 KLLEEQGIFL 10 Unmodified _KLLEEQGIFL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3456420898438 2 595.344989 1188.67542 0.48184 0.00028686 0.31967 0.00019032 0.80151 0.00047718 595.3450933092372 70.338 0.26931 70.373 70.234 70.503 0.035515 28 12 3 0 0 0 0.10406 1 38721 38721 45.74 10.808 1 2561600 27359 4011 18322 18672 32283 32283 0.08863427371420585 KLLEEQGIFL 10 Unmodified _KLLEEQGIFL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8475952148438 2 595.344989 1188.67542 0.63646 0.00037891 0.1528 9.0966E-05 0.78926 0.00046988 595.3449800994922 94.818 0.62069 88.643 88.233 88.854 -6.1757 98 35 4 0 0 0 0.018732 3 62637 62637;62757;62869 76.825 19.103 1 71952000 27360 4011 18322 18672 32284;32285;32286 32284 0.08863427371420585 KLLEFQLAL 9 Unmodified _KLLEFQLAL_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.831787109375 2 537.831517 1073.64848 NaN NaN NaN NaN NaN NaN NaN 84.634 1 84.697 84.197 85.197 0.063171 0 0 0 0.019743 1 46837 46837 78.728 3.799 1 27361 7765 18323 18673 32287 32287 0.11460363550872898 KLLEGEESRL 10 Unmodified _KLLEGEESRL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF CON__P05787;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8875427246094 3 391.88731 1172.6401 0.13622 5.3385E-05 -0.01444 -5.6587E-06 0.12178 4.7726E-05 391.8873051416464 31.41 0.30602 31.41 31.255 31.561 0 48 14 5 0 0 0 0.019181 2 16319 16319;16419 76.416 0 1 37232000 + 27362 165;199 18324 18674 32288;32289 32288 0.06068764843621466 KLLEGEESRL 10 Unmodified _KLLEGEESRL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF CON__P05787;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.3275756835938 2 587.327328 1172.6401 0.20102 0.00011806 -0.36958 -0.00021706 -0.16856 -9.8999E-05 587.3271575411269 31.409 0.26778 31.409 31.255 31.523 0 33 12 4 0 0 0 0.025874 1 16330 16330 88.364 0 1 10690000 + 27363 165;199 18324 18674 32290 32290 0.06068764843621466 KLLEGEESRL 10 Unmodified _KLLEGEESRL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF CON__P05787;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3270263671875 2 587.327328 1172.6401 1.2122 0.00071195 0.29286 0.00017201 1.5051 0.00088396 587.3269003588929 35.841 0.50452 31.648 31.425 31.93 -4.1928 89 31 4 0 0 0 0.0049786 2 20774 20774;20907 111.31 0 1 34413000 + 27364 165;199 18324 18674 32291;32292 32291 0.06068764843621466 KLLEGEESRL 10 Unmodified _KLLEGEESRL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF CON__P05787;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8873901367188 3 391.88731 1172.6401 1.5576 0.00061041 2.1466 0.00084124 3.7042 0.0014516 391.8871951649198 35.881 0.61166 31.688 31.425 32.037 -4.1928 141 37 6 0 0 0 0.029039 2 20782 20782;20920 68.484 0 1 81220000 + 27365 165;199 18324 18674 32293;32294 32293 0.06068764843621466 KLLEIMTRI 9 Unmodified _KLLEIMTRI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8444213867188 2 558.844102 1115.67365 1.2051 0.00067347 0.77163 0.00043122 1.9767 0.0011047 558.8442395756358 94.722 0.1623 88.546 88.463 88.625 -6.1757 17 9 3 0 0 0 0.0085366 1 62728 62728 90.135 10.539 1 12126000 27366 3102 18325 18675 32295 32295 0.1204409508181925 KLLEIMTRI 9 Unmodified _KLLEIMTRI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8990173339844 3 372.898493 1115.67365 1.6091 0.00060004 0.062142 2.3173E-05 1.6713 0.00062321 372.8984615599499 94.739 0.14718 88.563 88.463 88.61 -6.1757 13 8 2 0 0 0 0.025842 1 62730 62730 46.022 18.799 1 7738500 27367 3102 18325 18675 32296 32296 0.1204409508181925 KLLEPVLLL 9 Unmodified _KLLEPVLLL_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.3522338867188 2 519.352086 1036.68962 0.38135 0.00019805 -0.24839 -0.000129 0.13296 6.9053E-05 519.3518660527889 88.339 0.61881 87.835 87.561 88.18 -0.50423 101 27 5 0 0 0 0.020973 1 48241 48241 62.573 10.304 1 84619000 27368 2285 18326 18676 32297 32297 0.1727412459038078 KLLEPVLLL 9 Unmodified _KLLEPVLLL_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.35205078125 2 519.352086 1036.68962 -0.059684 -3.0997E-05 0.26921 0.00013982 0.20953 0.00010882 519.3521915520643 87.59 0.41178 87.643 87.477 87.888 0.053352 59 18 4 0 0 0 0.036857 1 48751 48751 51.63 3.284 1 224300000 27369 2285 18326 18676 32298 32298 0.1727412459038078 KLLEPVLLL 9 Unmodified _KLLEPVLLL_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.3522338867188 2 519.352086 1036.68962 0.79005 0.00041031 -0.14201 -7.3754E-05 0.64804 0.00033656 519.3519187308593 99.938 0.22031 93.763 93.664 93.884 -6.1757 63 15 5 0 0 0 0.010611 1 66655 66655 78.728 17.371 1 3890299999.9999995 27370 2285 18326 18676 32299 32299 0.1727412459038078 KLLETELLQEI 11 Unmodified _KLLETELLQEI_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.8873901367188 2 664.887218 1327.75988 -0.026128 -1.7372E-05 0.50045 0.00033274 0.47432 0.00031537 664.887494755989 79.17 0.35198 79.17 78.974 79.326 0 52 15 4 0 0 0 0.4178 2 44024 43917;44024 20.581 8.3403 1 6835700 27371 7082 18327 18677 32300;32301 32301 0.10911333397530143 KLLETELLQEI 11 Unmodified _KLLETELLQEI_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.8866577148438 2 664.887218 1327.75988 1.0151 0.00067495 -0.39138 -0.00026022 0.62375 0.00041472 664.8864197113169 79.643 0.34381 79.154 78.989 79.333 -0.48932 40 15 4 0 0 0 0.12819 1 43666 43666 39.213 10.718 1 8456100 27372 7082 18327 18677 32302 32302 0.10911333397530143 KLLETELLQEI 11 Unmodified _KLLETELLQEI_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.8883056640625 2 664.887218 1327.75988 0.67025 0.00044564 0.24194 0.00016087 0.9122 0.00060651 664.8872677860774 79.035 0.2486 79.09 78.936 79.185 0.05497 22 9 3 0 0 0 0.029988 1 43632 43632 55.235 13.279 1 5240400 27373 7082 18327 18677 32303 32303 0.10911333397530143 KLLETELLQEI 11 Unmodified _KLLETELLQEI_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.8884887695312 2 664.887218 1327.75988 0.94324 0.00062715 -0.095313 -6.3372E-05 0.84792 0.00056377 664.8870940076565 98.031 0.21986 91.855 91.749 91.968 -6.1757 42 13 4 0 0 0 1.267E-08 1 64951 64951 107.56 42.09 1 439010000 27374 7082 18327 18677 32304 32304 0.10911333397530143 KLLETKWTL 9 Unmodified _KLLETKWTL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8966674804688 3 377.897258 1130.66995 -0.24656 -9.3175E-05 -1.6308 -0.00061626 -1.8773 -0.00070943 377.8963053782991 53.9 0.43861 53.833 53.563 54.001 -0.066936 71 27 4 0 0 0 0.12357 2 29215 29215;29317 30.703 18.476 1 29729000 + 27375 199 18328 18678 32305;32306 32305 0.1098374857961062 KLLETKWTL 9 Unmodified _KLLETKWTL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3428955078125 2 566.342249 1130.66995 0.026905 1.5237E-05 -0.068729 -3.8924E-05 -0.041824 -2.3687E-05 566.3415931908935 53.873 0.38319 53.806 53.598 53.981 -0.066936 49 23 4 0 0 0 0.026582 1 29295 29295 61.09 24.584 1 50237000 + 27376 199 18328 18678 32307 32307 0.1098374857961062 KLLETKWTL 9 Unmodified _KLLETKWTL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8978881835938 3 377.897258 1130.66995 1.5827 0.0005981 0.035338 1.3354E-05 1.618 0.00061145 377.8972456893229 87.64 0.71976 81.464 81.13 81.85 -6.1757 122 39 4 0 0 0 0.012586 4 58000 57620;57755;57879;58000 73.196 35.445 1 93594000 + 27377 199 18328 18678 32308;32309;32310;32311 32311 0.1098374857961062 KLLETKWTL 9 Unmodified _KLLETKWTL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3427124023438 2 566.342249 1130.66995 1.2485 0.00070711 -0.47155 -0.00026706 0.777 0.00044005 566.3419026988541 87.584 0.72327 81.408 81.146 81.869 -6.1757 106 39 3 0 0 0 0.006582 3 57954 57694;57816;57954 121.5 81.711 1 110570000 + 27378 199 18328 18678 32312;32313;32314 32314 0.1098374857961062 KLLEVNGVAL 10 Unmodified _KLLEVNGVAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.3271484375 2 528.326599 1054.63865 0.38427 0.00020302 -0.18071 -9.5472E-05 0.20356 0.00010755 528.3266942365645 62.858 0.28376 62.858 62.679 62.963 0 19 11 2 0 0 0 0.55245 1 35071 35071 13.615 1.0833 1 1545600 27379 8930 18329 18679 32315 32315 0.11351175545519254 KLLEVNGVAL 10 Unmodified _KLLEVNGVAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.3271484375 2 528.326599 1054.63865 0.2713 0.00014333 0.83717 0.0004423 1.1085 0.00058563 528.327043349195 63.263 0.34563 62.777 62.603 62.948 -0.48617 47 15 4 0 0 0 0.047829 2 34543 34442;34543 59.368 26.583 1 13864000 27380 8930 18329 18679 32316;32317 32317 0.11351175545519254 KLLEVNGVAL 10 Unmodified _KLLEVNGVAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 528.326599 1054.63865 0.29544 0.00015609 1.0763 0.00056864 1.3718 0.00072474 528.8285274766721 62.815 0.17107 62.794 62.717 62.888 -0.021614 -0.01584 0.00027759 NaN 59.368 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2037900 27381 8930 18329 18679 0.11351175545519254 KLLEVQILEV 10 Unmodified _KLLEVQILEV_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3700561523438 2 592.368464 1182.72238 0.99353 0.00058854 0.67248 0.00039836 1.666 0.00098689 592.3691613560732 97.959 0.13107 91.783 91.716 91.847 -6.1757 16 7 3 0 0 0 0.02847 1 64953 64953 79.596 0 1 15403000 27382 4768 18330 18680 32318 32318 0.1383228692254761 KLLEVQPQV 9 Unmodified _KLLEVQPQV_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.3194580078125 2 527.318774 1052.623 0.92867 0.0004897 -0.13881 -7.3199E-05 0.78986 0.00041651 527.3187308369216 46.031 0.26663 46.031 45.882 46.149 0 22 12 2 0 0 0 0.016448 1 25108 25108 72.968 33.018 1 7550000 27383 3129 18331 18681 32319 32319 0.09878889028482263 KLLEVQPQV 9 Unmodified _KLLEVQPQV_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3197631835938 2 527.318774 1052.623 0.33874 0.00017862 0.62386 0.00032897 0.9626 0.0005076 527.3192239334101 46.237 0.21462 45.9 45.8 46.015 -0.33664 17 10 2 0 0 0 0.0085857 1 24749 24749 110.67 51.996 1 4911100 27384 3129 18331 18681 32320 32320 0.09878889028482263 KLLEVQPQV 9 Unmodified _KLLEVQPQV_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3187255859375 2 527.318774 1052.623 0.94786 0.00049982 0.18618 9.8177E-05 1.134 0.000598 527.3186752242657 52.659 0.29829 46.925 46.726 47.024 -5.7345 26 16 2 0 0 0 0.040337 1 33249 33249 53.404 20.618 1 27932000 27385 3129 18331 18681 32321 32321 0.09878889028482263 KLLFWVTEV 9 Unmodified _KLLFWVTEV_ 0 0 0 ENSG00000075188|ENST00000552283|NUP37 ENSG00000075188|ENST00000552283|NUP37 ENSG00000075188|ENST00000552283|NUP37 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.8562622070312 2 567.831517 1133.64848 0.99329 0.00056402 -0.87561 -0.0004972 0.11768 6.682E-05 567.8311937280528 99.963 0.11457 93.787 93.74 93.855 -6.1757 16 7 3 0 0 0 0.13704 1 66740 66740 32.786 13.529 1 41900000 27386 1144 18332 18682 32322 32322 0.08700363550883594 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.3138427734375 2 512.313492 1022.61243 0.17302 8.8641E-05 -0.065225 -3.3416E-05 0.10779 5.5225E-05 512.3134285138104 46.115 0.25352 45.779 45.628 45.881 -0.33664 33 12 4 0 0 0 0.0030184 1 24666 24666 126.57 44.953 1 27772000 27387 1249 18333 18683 32323 32323 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3145141601562 2 512.313492 1022.61243 0.50499 0.00025871 0.53363 0.00027338 1.0386 0.0005321 512.3138684036251 45.839 0.22491 45.811 45.702 45.926 -0.028015 17 10 2 0 0 0 0.0013034 1 24620 24620 137.42 66.29 1 2656200 27388 1249 18333 18683 32324 32324 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.279052734375 2 512.313492 1022.61243 0.71227 0.0003649 -0.28685 -0.00014696 0.42541 0.00021795 512.3133798042146 81.74 0.77719 75.565 75.288 76.066 -6.1757 80 43 2 0 0 0 0.048075 1 53831 53831 47.749 17.112 1 9121800 27389 1249 18333 18683 32325 32325 0.10202906374036047 KLLGELHTL 9 Unmodified _KLLGELHTL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.313492 1022.61243 0.66903 0.00034275 0.049743 2.5484E-05 0.71877 0.00036824 512.3134103064504 45.959 0.20558 45.959 45.838 46.044 0 0.1092 -2.0753E-05 NaN 137.42 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2398500 27390 1249 18333 18683 0.10202906374036047 KLLGKLPEL 9 Unmodified _KLLGKLPEL_ 0 0 0 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8341979980469 2 505.83406 1009.65357 0.27285 0.00013802 0.60061 0.00030381 0.87346 0.00044183 505.8341394623917 53.16 0.19566 53.096 53.002 53.198 -0.063423 16 9 2 0 0 0 0.05483 1 28838 28838 43.772 16.889 1 2144300 27391 6251 18334 18684 32326 32326 0.14912667413500458 KLLGNIKNV 9 Unmodified _KLLGNIKNV_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8215026855469 2 499.821484 997.628415 -0.034139 -1.7063E-05 -0.27782 -0.00013886 -0.31196 -0.00015592 499.821207697789 32.783 0.12152 32.813 32.721 32.842 0.029743 9 5 2 0 0 0 0.011968 1 17210 17210 74.929 42.624 1 2514100 27392 1830 18335 18685 32327 32327 0.1295061261093906 KLLGNIKNV 9 Unmodified _KLLGNIKNV_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8215942382812 2 499.821484 997.628415 1.342 0.00067078 -0.4908 -0.00024531 0.85124 0.00042547 499.82140630040846 37.23 0.32238 32.946 32.75 33.072 -4.2835 30 19 2 0 0 0 0.0082485 1 21839 21839 96.285 33.712 1 16318000 27393 1830 18335 18685 32328 32328 0.1295061261093906 KLLHPKKKIE 10 Unmodified _KLLHPKKKIE_ 0 0 0 ENSG00000188897|ENST00000696174|unknown;ENST00000595170.1_3_16:11556095-11569480:-|nuORF ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MSMS AL20221201_MKP_PDAC_01 4 617.4129638671875 2 617.405715 1232.79688 NaN NaN NaN NaN NaN NaN NaN 104.14 1 97.968 97.468 98.468 -6.1757 0 0 0 0.99388 1 69764 69764 1.3295 0.92882 1 27394 9707 18336 18686 32329 32329 0.18979094524615903 KLLIFLALALF 11 Unmodified _KLLIFLALALF_ 0 0 0 nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.4168701171875 2 631.41776 1260.82097 NaN NaN NaN NaN NaN NaN NaN 104.45 1 104.4 103.9 104.9 -0.048737 0 0 0 0.9435 1 57993 57993 0 0 1 27395 2995 18337 18687 32330 32330 0.20098934958218706 KLLKAREPRQL 11 Unmodified _KLLKAREPRQL_ 0 0 0 ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL ENSG00000249693|ENST00000512175|THEGL MSMS AL20221201_MKP_PDAC_01 4 676.4304809570312 2 676.430253 1350.84595 NaN NaN NaN NaN NaN NaN NaN 105.12 1 98.943 98.443 99.443 -6.1757 0 0 0 0.94313 1 70405 70405 0.26902 0.26902 1 27396 10747 18338 18688 32331 32331 0.18456382813565142 KLLKLVVENII 11 Unmodified _KLLKLVVENII_ 0 0 0 REV__ENSG00000186283|ENST00000367627|TOR3A REV__ENSG00000186283|ENST00000367627|TOR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.4268798828125 2 641.428856 1280.84316 1.3861 0.00088909 -4.2528 -0.0027279 -2.8667 -0.0018388 641.4260462934448 103.44 0.083054 97.26 97.216 97.299 -6.1757 14 9 2 0 0 0 0.7326 1 69347 69347 1.1933 0.84271 1 9527200 + 27397 23565 18339 18689 32332 32332 0.21397114636056358 KLLKVIKNP 9 Unmodified _KLLKVIKNP_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1053.055419921875 1 1052.71903 1051.71175 0.58243 0.00061314 4.2977 0.0045243 4.8801 0.0051374 1053.7257685951467 50.72 0.20133 50.307 50.236 50.438 -0.41351 11 9 2 0 0 0 0.61381 1 27364 27364 0.52476 0.52476 1 1419800 27398 3963 18340 18690 32333 32333 0.1879634905878902 KLLLEKRY 8 Unmodified _KLLLEKRY_ 0 0 0 REV__ENSG00000100865|ENST00000216756|CINP REV__ENSG00000100865|ENST00000216756|CINP MSMS AL20221201_MKP_PDAC_01 4 531.8368530273438 2 531.837134 1061.65972 NaN NaN NaN NaN NaN NaN NaN 56.67 1 50.693 50.193 51.193 -5.9769 0 0 0 0.62748 1 36180 36180 32.305 5.4218 1 + 27399 18111 18341 18691 32334 32334 0.13135185645046477 KLLLLLLTSI 10 Unmodified _KLLLLLLTSI_ 0 0 0 REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2 REV__nc|ENSG00000128578|Q9ULQ0-2|STRIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.8953247070312 2 563.894118 1125.77368 NaN NaN NaN NaN NaN NaN NaN 92.303 1 92.303 91.803 92.803 0 0 0 0 1.0024 1 51039 51039 0.40072 0 1 + 27400 19617 18342 18692 32335 32335 0.2158265568727984 KLLMELVFVYT 11 Unmodified _KLLMELVFVYT_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.5933227539062 3 452.592959 1354.75705 -0.41649 -0.0001885 0.94709 0.00042865 0.5306 0.00024015 452.59334794522937 28.164 0.1611 28.164 28.09 28.251 0 21 7 3 0 0 0 0.69509 1 14535 14535 4.7159 0 1 2913500 + 27401 23384 18343 18693 32336 32336 0.09385786738994284 KLLPEESDL 9 Unmodified _KLLPEESDL_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3289794921875 2 522.284597 1042.55464 0.55096 0.00028776 2.3652 0.0012353 2.9162 0.0015231 522.2846367216493 70.349 0.32995 70.384 70.173 70.503 0.035515 23 15 2 0 0 0 0.21564 1 38627 38627 3.9444 1.6417 1 1399700 27402 8362 18344 18694 32337 32337 0.03506599657953302 KLLPGDLTQV 10 Unmodified _KLLPGDLTQV_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2779541015625 2 542.324057 1082.63356 0.29842 0.00016184 -0.89655 -0.00048622 -0.59813 -0.00032438 542.3233817413549 57.339 0.27418 56.849 56.69 56.964 -0.48974 24 12 3 0 0 0 0.21645 1 31128 31128 27.223 3.2027 1 3145400 27403 5855 18345 18695 32338 32338 0.09554871682894372 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B ENSG00000140350|ENST00000465139|ANP32A;nc|ENSG00000136938|Q92688-2|ANP32B nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.840087890625 2 544.839342 1087.66413 0.24706 0.00013461 1.2844 0.00069981 1.5315 0.00083441 544.8400782777901 73.505 0.37857 73.549 73.314 73.692 0.043983 31 16 2 0 0 0 0.053952 1 40510 40510 47.749 27.295 1 5392600 27404 4886;5226 18346 18696 32339 32339 0.12380650067916577 KLLPQLTYL 9 Unmodified _KLLPQLTYL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000486769.1_1_9:100760930-100767440:+|nuORF;ENST00000483551.6_1_15:69072422-69081590:-|nuORF;nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B ENSG00000140350|ENST00000465139|ANP32A;nc|ENSG00000136938|Q92688-2|ANP32B nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8389892578125 2 544.839342 1087.66413 1.0882 0.00059289 0.37766 0.00020576 1.4658 0.00079865 544.8397364273382 97.08 0.26656 90.905 90.708 90.974 -6.1757 30 15 3 0 0 0 0.026499 1 64282 64282 71.922 31.973 1 27558000 27405 4886;5226 18346 18696 32340 32340 0.12380650067916577 KLLPWEPSL 9 Unmodified _KLLPWEPSL_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8170166015625 2 541.815867 1081.61718 0.12752 6.9095E-05 0.95882 0.0005195 1.0863 0.0005886 541.816522117389 77.413 0.25847 77.463 77.346 77.605 0.05011 27 10 3 0 0 0 0.0086722 1 42717 42717 88.954 50.98 1 4825500 27406 7664 18347 18697 32341 32341 0.07963790516805602 KLLQDISEA 9 Unmodified _KLLQDISEA_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7855224609375 2 508.784764 1015.55498 0.50461 0.00025674 0.84354 0.00042918 1.3481 0.00068592 508.78547251363995 45.984 0.28193 41.029 40.908 41.19 -4.9549 33 18 2 0 0 0 0.017075 1 28360 28360 66.457 0 1 17157000 27407 8367 18348 18698 32342 32342 0.04782019377796587 KLLQYDRDL 9 Unmodified _KLLQYDRDL_ 0 0 0 REV__ENSG00000041880|ENST00000398755|PARP3 REV__ENSG00000041880|ENST00000398755|PARP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5516967773438 3 388.552151 1162.63462 -0.26327 -0.00010229 0.55994 0.00021757 0.29667 0.00011527 388.552351909382 31.695 0.2379 31.695 31.561 31.799 0 32 11 4 0 0 0 0.35911 1 16509 16509 14.405 0 1 6051500 + 27408 17199 18349 18699 32343 32343 0.059810860518155096 KLLRKARRKLI 11 Unmodified _KLLRKARRKLI_ 0 0 0 ENST00000402913.2_1_X:26704220-26705692:+|nuORF ENST00000402913.2_1_X:26704220-26705692:+|nuORF ENST00000402913.2_1_X:26704220-26705692:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.9931030273438 2 697.993355 1393.97216 NaN NaN NaN NaN NaN NaN NaN 15.655 1 15.661 15.161 16.161 0.0057774 0 0 0 0.9435 1 7812 7812 0 0 1 27409 12899 18350 18700 32344 32344 0.29092934109485213 KLLRLERYTRR 11 Unmodified _KLLRLERYTRR_ 0 0 0 REV__ENST00000495277.1_1_22:50705599-50709047:-|nuORF REV__ENST00000495277.1_1_22:50705599-50709047:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 752.4679565429688 2 752.465158 1502.91576 0.82546 0.00062113 1.4943 0.0011244 2.3198 0.0017455 752.9679549568206 98.546 0.14552 92.37 92.308 92.453 -6.1757 21 10 3 0 0 0 0.71341 1 65370 65370 2.9952 1.6657 1 54120000 + 27410 23498 18351 18701 32345 32345 0.18442261482164213 KLLSENTNL 9 Unmodified _KLLSENTNL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.762939453125 2 516.290214 1030.56587 0.79617 0.00041105 -1.3681 -0.00070633 -0.57191 -0.00029527 516.2896366030718 36.548 0.26038 36.548 36.388 36.648 0 21 12 2 0 0 0 0.18482 1 19384 19384 18.146 2.2992 1 3925400 27411 6274 18352 18702 32346 32346 0.051814217520814054 KLLSENTNL 9 Unmodified _KLLSENTNL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.29150390625 2 516.290214 1030.56587 0.63926 0.00033004 -0.39312 -0.00020296 0.24614 0.00012708 516.2898768532986 42.14 0.29589 37.456 37.317 37.613 -4.6846 33 18 2 0 0 0 0.0082353 1 25401 25401 96.111 46.178 1 13617000 27412 6274 18352 18702 32347 32347 0.051814217520814054 KLLSKFYEL 9 Unmodified _KLLSKFYEL_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8933410644531 3 380.893625 1139.65905 0.64472 0.00024557 0.18647 7.1026E-05 0.8312 0.0003166 380.89370714609953 52.699 0.22002 52.635 52.522 52.742 -0.063423 15 10 2 0 0 0 0.57757 1 28589 28589 2.7352 0.82882 1 2014000 27413 1567 18353 18703 32348 32348 0.09480346205350543 KLLSTALHV 9 Unmodified _KLLSTALHV_ 0 0 0 ENSG00000148677|ENST00000371697|ANKRD1;ANKRD1|p.D216N|1|0.17|ENSG00000148677|chr10:90916176-90916176|C/T|missense_variant ENSG00000148677|ENST00000371697|ANKRD1 ENSG00000148677|ENST00000371697|ANKRD1 MSMS AL20221201_MKP_PDAC_01 4 491.3081359863281 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 47.878 1 42.644 42.144 43.144 -5.2339 0 0 0 0.038824 1 29767 29767 62.573 31.936 1 27414 5953 18354 18704 32349 32349 0.11078923719605882 KLLTCLLYI 9 Unmodified _KLLTCLLYI_ 0 0 0 nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.808349609375 2 540.330296 1078.64604 1.0022 0.00054152 -0.45169 -0.00024406 0.55051 0.00029746 540.3302755650923 96.132 0.22256 89.956 89.833 90.056 -6.1757 23 13 3 0 0 0 0.19496 1 63715 63715 13.906 1.3745 1 23861000 27415 2476 18355 18705 32350 32350 0.1098619182157563 KLLTEHFL 8 Unmodified _KLLTEHFL_ 0 0 0 ENST00000482723.1_1_17:72439553-72445018:+|nuORF ENST00000482723.1_1_17:72439553-72445018:+|nuORF ENST00000482723.1_1_17:72439553-72445018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7933349609375 2 500.794935 999.575317 -0.20861 -0.00010447 -0.2737 -0.00013707 -0.48231 -0.00024154 500.79448285264584 53.87 0.23671 53.803 53.704 53.941 -0.066936 27 11 3 0 0 0 0.23628 1 29240 29240 64.236 19.829 1 4591800 27416 14111 18356 18706 32351 32351 0.07551234828270026 KLLTEHFL 8 Unmodified _KLLTEHFL_ 0 0 0 ENST00000482723.1_1_17:72439553-72445018:+|nuORF ENST00000482723.1_1_17:72439553-72445018:+|nuORF ENST00000482723.1_1_17:72439553-72445018:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7950439453125 2 500.794935 999.575317 1.1955 0.00059871 -0.93124 -0.00046636 0.26429 0.00013236 500.7948136591373 87.611 0.83408 81.435 80.895 81.729 -6.1757 88 45 3 0 0 0 0.50673 1 57743 57743 34.102 3.8776 1 29568000 27417 14111 18356 18706 32352 32352 0.07551234828270026 KLLVISLLVLK 11 Unmodified _KLLVISLLVLK_ 0 0 0 REV__nc|ENSG00000138674|O94979-7|SEC31A REV__nc|ENSG00000138674|O94979-7|SEC31A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.6326599121094 3 413.631853 1237.87373 NaN NaN NaN NaN NaN NaN NaN 69.625 1 69.625 69.125 70.125 0 0 0 0 0.9435 1 38789 38789 0 0 1 + 27418 29659 18357 18707 32353 32353 0.26430893021074553 KLMDEVAGI 9 Oxidation (M) _KLM(Oxidation (M))DEVAGI_ KLM(1)DEVAGI KLM(46)DEVAGI 0 0 1 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2601318359375 2 496.260068 990.505582 0.30141 0.00014958 -0.18424 -9.1432E-05 0.11717 5.8146E-05 496.2600640697046 39.497 0.46213 39.497 39.177 39.639 0 70 21 4 0 0 0 0.047788 1 21140 21140 45.7 11.298 1 27133000 27419 1680 18358 18708 32354 32354 283 0.009949880973636027 KLMDHIYAV 9 Oxidation (M) _KLM(Oxidation (M))DHIYAV_ KLM(1)DHIYAV KLM(63)DHIYAV 0 0 1 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2885131835938 2 553.289159 1104.56377 -0.13477 -7.4567E-05 -0.82816 -0.00045821 -0.96293 -0.00053278 553.2888109963077 33.653 0.20072 33.653 33.565 33.765 0 31 13 3 0 0 0 0.020973 1 17640 17640 62.573 26.107 1 16862000 27420 7210 18359 18709 32355 32355 1250 0.015666697426013343 KLMDHIYAV 9 Oxidation (M) _KLM(Oxidation (M))DHIYAV_ KLM(1)DHIYAV KLM(44)DHIYAV 0 0 1 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2891235351562 2 553.289159 1104.56377 -0.20044 -0.0001109 0.018446 1.0206E-05 -0.182 -0.0001007 553.2891901395831 33.887 0.20456 33.887 33.765 33.97 0 34 9 4 0 0 0 0.05447 1 17780 17780 43.858 9.7559 1 18527000 27421 7210 18359 18709 32356 32356 1250 0.015666697426013343 KLMDHIYAV 9 Oxidation (M) _KLM(Oxidation (M))DHIYAV_ KLM(1)DHIYAV KLM(56)DHIYAV 0 0 1 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.289306640625 2 553.289159 1104.56377 -0.092756 -5.1321E-05 0.65114 0.00036027 0.55838 0.00030895 553.2895919388409 34.021 0.25412 33.829 33.718 33.972 -0.19131 27 9 4 0 0 0 0.028475 1 17738 17738 56.177 19.711 1 7591300 27422 7210 18359 18709 32357 32357 1250 0.015666697426013343 KLMDHIYAV 9 Oxidation (M) _KLM(Oxidation (M))DHIYAV_ KLM(1)DHIYAV KLM(58)DHIYAV 0 0 1 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2901611328125 2 553.289159 1104.56377 0.89592 0.0004957 -1.2894 -0.0007134 -0.39347 -0.0002177 553.2884919243247 38.162 0.49294 33.793 33.581 34.074 -4.3689 67 29 3 0 0 0 0.025842 2 22392 22392;22516 57.722 27.085 1 23272000 27423 7210 18359 18709 32358;32359 32358 1250 0.015666697426013343 KLMDHIYAV 9 Oxidation (M) _KLM(Oxidation (M))DHIYAV_ 0 0 1 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.289159 1104.56377 0.19455 0.00010764 -0.1211 -6.7005E-05 0.073443 4.0635E-05 553.7902941476132 33.74 0.18535 33.769 33.696 33.881 0.028934 -0.050991 6.9963E-05 NaN 57.722 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 930830 27424 7210 18359 18709 1250 0.015666697426013343 KLMDHIYAV 9 Unmodified _KLMDHIYAV_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2930908203125 2 545.291702 1088.56885 1.0325 0.00056303 0.50359 0.00027461 1.5361 0.00083764 545.2926114088817 50.305 0.35005 44.766 44.594 44.944 -5.5391 70 22 4 0 0 0 0.044011 2 31577 31447;31577 47.749 20.865 1 72444000 27425 7210 18359 18710 32360;32361 32361 0.028109736052329026 KLMDHIYAV 9 Unmodified _KLMDHIYAV_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8643493652344 3 363.86356 1088.56885 1.7842 0.00064921 -0.16761 -6.0989E-05 1.6166 0.00058822 363.86353878199395 50.303 0.35005 44.764 44.594 44.944 -5.5391 59 22 4 0 0 0 0.20428 1 31644 31644 27.223 12.818 1 33881000 27426 7210 18359 18710 32362 32362 0.028109736052329026 KLMDLDVEQL 10 Oxidation (M) _KLM(Oxidation (M))DLDVEQL_ KLM(1)DLDVEQL KLM(65)DLDVEQL 0 0 1 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.31591796875 2 610.315571 1218.61659 0.53122 0.00032421 -0.2403 -0.00014666 0.29093 0.00017756 610.3157593906219 53.85 0.34555 53.85 53.705 54.051 0 54 15 4 0 0 0 0.035244 2 29963 29851;29963 65.474 27.298 1 28636000 27427 4431 18360 18711 32363;32364 32364 810 0.01602583014778247 KLMDLDVEQL 10 Oxidation (M) _KLM(Oxidation (M))DLDVEQL_ KLM(1)DLDVEQL KLM(57)DLDVEQL 0 0 1 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.314697265625 2 610.315571 1218.61659 1.0448 0.00063769 -1.3908 -0.00084882 -0.34594 -0.00021113 610.314545513914 60.825 0.35126 54.677 54.532 54.884 -6.1478 27 18 2 0 0 0 0.052718 1 39256 39256 57.249 19.074 1 19536000 27428 4431 18360 18711 32365 32365 810 0.01602583014778247 KLMDLDVEQL 10 Unmodified _KLMDLDVEQL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA;ENST00000532690.1_1_11:19296372-19296621:-|nuORF;ENST00000397222.2_1_X:45918520-45918886:-|nuORF ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3216552734375 2 602.318114 1202.62167 0.2242 0.00013504 0.6843 0.00041217 0.90849 0.0005472 602.3185954675976 84.071 0.6029 77.895 77.587 78.19 -6.1757 49 32 2 0 0 0 0.052718 3 55285 55153;55285;55414 57.249 15.409 1 10327000 27429 4431 18360 18712 32366;32367;32368 32367 0.028468868774098155 KLMDQLEAL 9 Unmodified _KLMDQLEAL_ 0 0 0 ENSG00000009844|ENST00000367630|VTA1 ENSG00000009844|ENST00000367630|VTA1 ENSG00000009844|ENST00000367630|VTA1 MSMS AL20221201_MKP_PDAC_01 4 530.786865234375 2 530.788992 1059.56343 NaN NaN NaN NaN NaN NaN NaN 74.412 1 68.237 67.737 68.737 -6.1757 0 0 0 0.24069 1 48648 48648 36.506 11.107 1 27430 408 18361 18713 32369 32369 0.03603250022774773 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(58)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3104858398438 2 567.309758 1132.60496 0.51241 0.00029069 0.1513 8.5833E-05 0.66371 0.00037653 567.3099195592282 67.075 0.46416 67.075 66.878 67.342 0 66 20 5 0 0 0 0.025842 2 37447 37349;37447 57.722 19.748 1 42755000 27431 8322 18362 18714 32370;32371 32371 1406 0.04396385991435636 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(52)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3093872070312 2 567.309758 1132.60496 0.48804 0.00027687 -0.82648 -0.00046887 -0.33843 -0.000192 567.309369836668 67.613 0.48473 67.613 67.366 67.851 0 63 22 5 0 0 0 0.036857 1 37745 37745 51.63 13.656 1 43500000 27432 8322 18362 18714 32372 32372 1406 0.04396385991435636 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(69)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3109741210938 2 567.309758 1132.60496 0.67267 0.00038161 -0.41764 -0.00023693 0.25504 0.00014469 567.3097651164852 67.503 0.411 67.021 66.844 67.255 -0.48218 53 17 4 0 0 0 0.014417 2 36843 36843;36945 69.105 15.272 1 16310000 27433 8322 18362 18714 32373;32374 32373 1406 0.04396385991435636 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(79)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.31103515625 2 567.309758 1132.60496 0.81633 0.00046311 0.62105 0.00035233 1.4374 0.00081544 567.3100335102016 66.983 0.26717 67.001 66.876 67.143 0.018036 33 12 3 0 0 0 0.010611 1 36752 36752 78.728 24.895 1 7315000 27434 8322 18362 18714 32375 32375 1406 0.04396385991435636 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(44)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3108520507812 2 567.309758 1132.60496 1.0375 0.00058859 -1.0286 -0.00058354 0.0089071 5.0531E-06 567.309135373025 93.661 0.69067 87.486 87.285 87.976 -6.1757 88 40 3 0 0 0 0.05483 1 62239 62239 43.772 9.3707 1 24116000 27435 8322 18362 18714 32376 32376 1406 0.04396385991435636 KLMELLEEI 9 Oxidation (M) _KLM(Oxidation (M))ELLEEI_ KLM(1)ELLEEI KLM(69)ELLEEI 0 0 1 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3110961914062 2 567.309758 1132.60496 1.4083 0.00079894 1.4083 0.00079895 2.8166 0.0015979 567.309824681173 94.389 0.61151 88.213 87.898 88.509 -6.1757 66 35 3 0 0 0 0.014417 2 62552 62429;62552 69.105 23.084 1 56011000 27436 8322 18362 18714 32377;32378 32378 1406 0.04396385991435636 KLMELLEEI 9 Unmodified _KLMELLEEI_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3135986328125 2 559.3123 1116.61005 0.94382 0.00052789 0.36978 0.00020682 1.3136 0.00073471 559.3127950660863 81.449 0.44246 80.957 80.77 81.213 -0.49247 59 18 4 0 0 0 0.067618 2 44654 44560;44654 51.63 20.361 1 5617000 27437 8322 18362 18715 32379;32380 32380 0.056406898540672046 KLMELLEEI 9 Unmodified _KLMELLEEI_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3125610351562 2 559.3123 1116.61005 0.67036 0.00037494 0.51817 0.00028982 1.1885 0.00066476 559.3125967786438 99.642 0.17036 93.467 93.354 93.525 -6.1757 39 10 5 0 0 0 0.052231 1 66396 66396 55.503 15.545 1 721530000 27438 8322 18362 18715 32381 32381 0.056406898540672046 KLMELLEEI 9 Unmodified _KLMELLEEI_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.3123 1116.61005 0.94382 0.00052789 0.36978 0.00020682 1.3136 0.00073471 559.3127950660863 81.449 0.44246 80.957 80.77 81.213 -0.49247 0.070919 -0.00010462 NaN 51.63 59 18 4 NaN NaN NaN NaN 0 NaN NaN 0 5617000 27439 8322 18362 18715 0.056406898540672046 KLMELLEEI 9 Unmodified _KLMELLEEI_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.3123 1116.61005 0.81497 0.00045582 -0.19633 -0.00010981 0.61864 0.00034601 559.3126517666475 80.638 0.22971 80.695 80.607 80.837 0.057587 -0.19079 -0.00073789 NaN 51.63 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2959800 27440 8322 18362 18715 0.056406898540672046 KLMGQIHQL 9 Oxidation (M) _KLM(Oxidation (M))GQIHQL_ KLM(1)GQIHQL KLM(46)GQIHQL 0 0 1 nc|ENSG00000066455|Q8TBA6-2|GOLGA5;ENSG00000066455|ENST00000163416|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8719177246094 3 361.870826 1082.59065 1.1778 0.00042622 1.2425 0.00044962 2.4203 0.00087584 361.87153890691087 28.154 0.29822 25.006 24.843 25.142 -3.1482 39 15 3 0 0 0 0.047714 1 15660 15660 45.74 17.245 1 10133000 27441 938 18363 18716 32382 32382 146 0.052657783538279546 KLMGQIHQL 9 Oxidation (M) _KLM(Oxidation (M))GQIHQL_ KLM(1)GQIHQL KLM(92)GQIHQL 0 0 1 nc|ENSG00000066455|Q8TBA6-2|GOLGA5;ENSG00000066455|ENST00000163416|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3035888671875 2 542.302601 1082.59065 0.37085 0.00020111 0.80682 0.00043754 1.1777 0.00063865 542.3029158179055 28.109 0.25128 24.96 24.826 25.077 -3.1482 20 13 2 0 0 0 0.0082661 1 15688 15688 92.491 46.47 1 4090400 27442 938 18363 18716 32383 32383 146 0.052657783538279546 KLMGQIHQL 9 Oxidation (M) _KLM(Oxidation (M))GQIHQL_ 0 0 1 nc|ENSG00000066455|Q8TBA6-2|GOLGA5;ENSG00000066455|ENST00000163416|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 nc|ENSG00000066455|Q8TBA6-2|GOLGA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.870826 1082.59065 -0.42672 -0.00015442 0.86425 0.00031275 0.43753 0.00015833 361.87106963307696 25.23 0.19633 25.23 25.087 25.283 0 0.11171 -9.641E-05 NaN 45.74 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 782130 27443 938 18363 18716 146 0.052657783538279546 KLMLHRFL 8 Unmodified _KLMLHRFL_ 0 0 0 nc|ENSG00000133687|Q8IUR5-3|TMTC1;ENST00000553189.5_1_12:29689066-29935873:-|nuORF nc|ENSG00000133687|Q8IUR5-3|TMTC1 nc|ENSG00000133687|Q8IUR5-3|TMTC1 MSMS AL20221201_MKP_PDAC_01 4 353.216796875 3 353.216157 1056.62664 NaN NaN NaN NaN NaN NaN NaN 44.543 1 39.691 39.191 40.191 -4.852 0 0 0 0.97444 1 27207 27207 3.5965 1.098 1 27444 15187 18364 18717 32384 32384 0.10059280321343067 KLMPSASFE 9 Unmodified _KLMPSASFE_ 0 0 0 REV__ENSG00000167978|ENST00000301740|SRRM2 REV__ENSG00000167978|ENST00000301740|SRRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2530517578125 2 505.254785 1008.49502 0.63628 0.00032148 -2.4847 -0.0012554 -1.8485 -0.00093395 505.25363816866826 48.2 0.41198 42.966 42.657 43.069 -5.2339 61 24 3 0 0 0 0.07916 1 29886 29886 37.974 3.8716 1 37702000 + 27445 22270 18365 18718 32385 32385 -0.00888994557078604 KLMPSASFE 9 Unmodified _KLMPSASFE_ 0 0 0 REV__ENSG00000167978|ENST00000301740|SRRM2 REV__ENSG00000167978|ENST00000301740|SRRM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 505.254785 1008.49502 -0.24038 -0.00012145 -3.8661 -0.0019534 -4.1065 -0.0020748 505.2527149505596 43.233 0.32483 42.923 42.72 43.045 -0.31039 -0.031944 -0.00063578 NaN 37.974 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 7389800 + 27446 22270 18365 18718 -0.00888994557078604 KLMSRHHLK 9 Unmodified _KLMSRHHLK_ 0 0 0 REV__ENST00000396842.6_1_3:15481035-15481125:+|nuORF REV__ENST00000396842.6_1_3:15481035-15481125:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.9182739257812 3 383.893965 1148.66007 1.5821 0.00060736 -1.0015 -0.00038448 0.58057 0.00022288 383.8936739933888 90.961 0.3995 84.785 84.474 84.873 -6.1757 47 23 3 0 0 0 0.20572 1 59985 59985 3.8763 0 1 17657000 + 27447 26516 18366 18719 32386 32386 0.09168282093219204 KLNAISVLY 9 Unmodified _KLNAISVLY_ 0 0 0 nc|ENSG00000112175|P22003-2|BMP5;ENSG00000112175|ENST00000370830|BMP5;ENSG00000153162|ENST00000283147|BMP6 nc|ENSG00000112175|P22003-2|BMP5 nc|ENSG00000112175|P22003-2|BMP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.8082580566406 2 510.808042 1019.60153 0.59732 0.00030512 0.16712 8.5365E-05 0.76444 0.00039048 510.8082247228161 49.678 0.21626 49.285 49.178 49.395 -0.3923 32 10 4 0 0 0 0.095405 1 26744 26744 34.102 1.797 1 8159300 27448 2867 18367 18720 32387 32387 0.09251503999757915 KLNATNIEL 9 Unmodified _KLNATNIEL_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2930297851562 2 508.292756 1014.57096 0.91095 0.00046303 -0.61923 -0.00031475 0.29172 0.00014828 508.2924566495492 46.374 0.42075 46.374 46.164 46.585 0 58 19 4 0 0 0 0.0090948 1 25306 25306 85.272 24.882 1 35157000 27449 5462 18368 18721 32388 32388 0.06425725614690236 KLNATNIEL 9 Unmodified _KLNATNIEL_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2935485839844 2 508.292756 1014.57096 0.27332 0.00013893 -0.33787 -0.00017174 -0.064553 -3.2812E-05 508.2926122065862 46.515 0.23585 46.178 46.073 46.309 -0.33664 15 11 2 0 0 0 0.094149 1 24921 24921 34.402 0.29928 1 4095000 27450 5462 18368 18721 32389 32389 0.06425725614690236 KLNATNIEL 9 Unmodified _KLNATNIEL_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2924194335938 2 508.292756 1014.57096 0.28434 0.00014453 0.15835 8.0487E-05 0.44269 0.00022502 508.2927158314166 51.907 0.327 46.173 46.051 46.378 -5.7345 39 22 2 0 0 0 0.0085164 2 32664 32664;32804 99.799 14.442 1 72302000 27451 5462 18368 18721 32390;32391 32390 0.06425725614690236 KLNELEIAL 9 Unmodified _KLNELEIAL_ 0 0 0 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8108520507812 2 521.810782 1041.60701 1.0046 0.0005242 -1.7517 -0.00091406 -0.74712 -0.00038986 521.8098338095004 57.2 0.38555 51.173 50.971 51.356 -6.0275 34 21 2 0 0 0 0.039985 1 36567 36567 49.933 2.1843 1 34380000 + 27452 29857 18369 18722 32392 32392 0.0878718279154782 KLNHVAAG 8 Unmodified _KLNHVAAG_ 0 0 0 nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 nc|ENSG00000116754|Q05519-2|SRSF11 MSMS AL20221201_MKP_PDAC_01 4 405.2364196777344 2 405.235045 808.455536 NaN NaN NaN NaN NaN NaN NaN 105.1 1 98.928 98.428 99.428 -6.1757 0 0 0 0.97444 1 70392 70392 2.8892 0.58649 1 27453 3252 18370 18723 32393 32393 0.04364666274364026 KLNNLLTAL 9 Unmodified _KLNNLLTAL_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.7890625 2 500.313492 998.612431 1.4716 0.00073624 -3.7796 -0.001891 -2.3081 -0.0011548 500.310627461716 95.611 0.26085 89.436 89.247 89.508 -6.1757 24 15 2 0 0 0 0.209 1 63269 63269 3.9444 0 1 13546000 + 27454 18989 18371 18724 32394 32394 0.11306906374011305 KLNPQQFEV 9 Unmodified _KLNPQQFEV_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7980346679688 2 551.798206 1101.58186 0.81102 0.00044752 2.6805 0.0014791 3.4915 0.0019266 551.7979378694491 46.481 0.28023 46.481 46.351 46.631 0 37 12 4 0 0 0 0.08691 1 25415 25415 36.127 19.014 1 3975700 27455 4654 18372 18725 32395 32395 0.035131279889810685 KLNPQQFEV 9 Unmodified _KLNPQQFEV_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7984619140625 2 551.798206 1101.58186 0.69544 0.00038374 0.22128 0.0001221 0.91672 0.00050584 551.7982317513028 46.739 0.17406 46.402 46.309 46.483 -0.33664 13 8 2 0 0 0 0.028475 1 25034 25034 56.177 28.548 1 2803800 27456 4654 18372 18725 32396 32396 0.035131279889810685 KLNVAPLAV 9 Unmodified _KLNVAPLAV_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000485869.1_1_2:130940017-130940434:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7972106933594 2 462.797478 923.580402 0.099184 4.5902E-05 0.054866 2.5392E-05 0.15405 7.1294E-05 462.79746065156434 54.154 0.25553 53.687 53.547 53.803 -0.46664 19 12 2 0 0 0 0.095405 1 29337 29337 34.102 10.954 1 1916800 27457 6161 18373 18726 32397 32397 0.11555538690890899 KLNWKRIL 8 Unmodified _KLNWKRIL_ 0 0 0 ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF ENSG00000156253|ENST00000493196|RWDD2B ENSG00000156253|ENST00000493196|RWDD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5657653808594 3 357.565954 1069.67603 -0.14255 -5.097E-05 0.15197 5.434E-05 0.0094271 3.3708E-06 357.565971876182 35.4 0.31705 35.425 35.285 35.602 0.024971 40 14 4 0 0 0 0.72664 1 18701 18701 14.838 0 1 10693000 27458 6442 18374 18727 32398 32398 0.1439831160180347 KLNWKRIL 8 Unmodified _KLNWKRIL_ 0 0 0 ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF ENSG00000156253|ENST00000493196|RWDD2B ENSG00000156253|ENST00000493196|RWDD2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.8976440429688 3 357.565954 1069.67603 1.5463 0.00055292 -0.83722 -0.00029936 0.70911 0.00025356 357.5657117624367 82.981 0.75152 76.805 76.536 77.287 -6.1757 54 40 2 0 0 0 8.7369 1 54467 54467 14.838 0 1 8774000 27459 6442 18374 18727 32399 32399 0.1439831160180347 KLPAAGKL 8 Unmodified _KLPAAGKL_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2658996582031 2 399.265813 796.517074 1.2391 0.00049473 0.19296 7.7042E-05 1.4321 0.00057177 399.2658685781028 20.348 0.34724 17.655 17.494 17.841 -2.693 43 19 3 0 0 0 0.67481 1 10800 10800 19.439 0 1 5238100 + 27460 23742 18375 18728 32400 32400 0.11067597973669763 KLPALFFL 8 Unmodified _KLPALFFL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5952758789062 1 948.591702 947.584425 1.0088 0.00095692 1.8117 0.0017185 2.8204 0.0026754 948.5949564300812 101 0.071617 94.823 94.798 94.869 -6.1757 6 3 2 0 0 0 0.076458 1 67696 67696 119.03 0 1 19883000 27461 4951 18376 18729 32401 32401 0.10853628184611352 KLPALFFLF 9 Unmodified _KLPALFFLF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3329467773438 2 548.333696 1094.65284 -0.17042 -9.3449E-05 -0.27595 -0.00015131 -0.44637 -0.00024476 548.3334631692136 101.09 0.26694 101.05 100.9 101.16 -0.04216 30 9 5 0 0 0 0.038285 1 56130 56130 50.855 0 1 157150000 27462 4951 18377 18730 32402 32402 0.1092987276445001 KLPALFFLF 9 Unmodified _KLPALFFLF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3338623046875 2 548.333696 1094.65284 0.68623 0.00037628 0.14351 7.8691E-05 0.82973 0.00045497 548.3337856051251 102 0.17722 95.822 95.7 95.877 -6.1757 33 8 5 0 0 0 0.026094 1 68430 68430 57.471 0 1 269280000 27463 4951 18377 18730 32403 32403 0.1092987276445001 KLPANHPLL 9 Unmodified _KLPANHPLL_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.8076782226562 2 501.808377 1001.6022 1.3269 0.00066587 -0.98363 -0.00049359 0.34332 0.00017228 501.8079188871334 37.528 0.3336 33.244 33.072 33.406 -4.2835 28 19 2 0 0 0 0.026094 1 22061 22061 57.471 30.588 1 8276600 27464 3048 18378 18731 32404 32404 0.10146343439475913 KLPDKIPWV 9 Unmodified _KLPDKIPWV_ 0 0 0 REV__ENSG00000124143|ENST00000373345|ARHGAP40 REV__ENSG00000124143|ENST00000373345|ARHGAP40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8889770507812 3 365.890215 1094.64882 NaN NaN NaN NaN NaN NaN NaN 19.9 1 19.9 19.4 20.4 0 0 0 0 0.82579 1 9983 9983 4.5289 0.33936 1 + 27465 19418 18379 18732 32405 32405 0.10527783270731561 KLPDVYGVFQF 11 Unmodified _KLPDVYGVFQF_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.85107421875 2 656.850438 1311.68632 0.027469 1.8043E-05 0.22649 0.00014877 0.25396 0.00016681 656.8506978133142 99.017 0.11631 92.841 92.778 92.894 -6.1757 18 6 4 0 0 0 2.1084E-05 1 65808 65808 101.54 84.101 1 45573000 27466 10723 18380 18733 32406 32406 0.04294829745686002 KLPEKTFLKM 10 Unmodified _KLPEKTFLKM_ 0 0 0 REV__ENSG00000198888|ENST00000361390|MT-ND1 REV__ENSG00000198888|ENST00000361390|MT-ND1 MSMS AL20221201_MKP_PDAC_01 4 412.24755859375 3 412.245782 1233.71552 NaN NaN NaN NaN NaN NaN NaN 31.494 1 27.798 27.298 28.298 -3.6958 0 0 0 0.87645 1 17842 17842 8.9762 3.1928 1 + 27467 24093 18381 18734 32407 32407 0.10800650770329412 KLPEKTQTF 9 Unmodified _KLPEKTQTF_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3089599609375 2 546.308406 1090.60226 -0.14854 -8.1148E-05 0.0083505 4.5619E-06 -0.14019 -7.6586E-05 546.3083676140088 22.806 0.28041 22.806 22.694 22.974 0 26 15 2 0 0 0 0.082934 1 11599 11599 39.95 14.959 1 2528100 27468 5068 18382 18735 32408 32408 0.060582986487816015 KLPEKTQTF 9 Unmodified _KLPEKTQTF_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3080444335938 2 546.308406 1090.60226 -0.25455 -0.00013906 0.68144 0.00037228 0.4269 0.00023322 546.3088134602433 25.706 0.30278 22.755 22.538 22.841 -2.9511 28 16 2 0 0 0 0.011739 2 14013 14013;14127 82.529 32.975 1 11098000 27469 5068 18382 18735 32409;32410 32409 0.060582986487816015 KLPERQPEF 9 Unmodified _KLPERQPEF_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-3|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8768615722656 3 381.876746 1142.60841 -0.45505 -0.00017377 0.59408 0.00022687 0.13903 5.3094E-05 381.8770513836236 29.041 0.31905 29.041 28.923 29.242 0 31 15 3 0 0 0 0.49766 1 15006 15006 7.609 0.50723 1 3287300 27470 7819 18383 18736 32411 32411 0.04280816880304883 KLPERQPEF 9 Unmodified _KLPERQPEF_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-3|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3124389648438 2 572.31148 1142.60841 -0.14171 -8.1101E-05 0.30516 0.00017465 0.16346 9.3548E-05 572.311632883131 29.04 0.199 29.04 28.923 29.122 0 18 9 2 0 0 0 0.49214 1 15010 15010 11.495 2.1116 1 1834600 27471 7819 18383 18736 32412 32412 0.04280816880304883 KLPFTIPEL 9 Unmodified _KLPFTIPEL_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENSG00000134398|ENST00000256797|ERN2 ENSG00000178607|ENST00000433197|ERN1;ENSG00000134398|ENST00000256797|ERN2 ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3192138671875 2 529.318243 1056.62193 0.56073 0.0002968 0.40855 0.00021625 0.96928 0.00051306 529.3182827129195 99.102 0.13298 92.926 92.841 92.974 -6.1757 18 7 3 0 0 0 0.0082661 1 65885 65885 92.491 21.358 1 64949000 27472 8762;4605 18384 18737 32413 32413 0.0958867465953972 KLPGKIHLF 9 Unmodified _KLPGKIHLF_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5585021972656 3 351.558688 1051.65424 -0.041904 -1.4732E-05 0.14186 4.9874E-05 0.099961 3.5142E-05 351.55878508150965 44.168 0.39324 44.146 44.052 44.446 -0.022064 51 23 3 0 0 0 0.10247 2 23776 23673;23776 32.786 17.537 1 33861000 27473 4994 18385 18738 32414;32415 32415 0.13047506853217783 KLPGKIHLF 9 Unmodified _KLPGKIHLF_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8350219726562 2 526.834394 1051.65424 NaN NaN NaN NaN NaN NaN NaN 44.21 1 44.188 43.688 44.688 -0.022064 0 0 0 0.13831 1 23718 23718 50.855 26.834 1 27474 4994 18385 18738 32416 32416 0.13047506853217783 KLPGKIHLF 9 Unmodified _KLPGKIHLF_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5592956542969 3 351.558688 1051.65424 1.4516 0.00051032 0.24086 8.4677E-05 1.6925 0.000595 351.5587153212746 90.309 0.52347 84.133 83.848 84.372 -6.1757 97 30 4 0 0 0 0.047788 3 59645 59524;59645;59781 45.7 32.657 1 248860000 27475 4994 18385 18738 32417;32418;32419 32418 0.13047506853217783 KLPGKIHLF 9 Unmodified _KLPGKIHLF_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.8353271484375 2 526.834394 1051.65424 0.77813 0.00040995 0.03286 1.7312E-05 0.81099 0.00042726 526.8344542403295 90.33 0.40457 84.154 83.951 84.355 -6.1757 51 23 3 0 0 0 0.13231 1 59609 59609 39.957 24.11 1 31982000 27476 4994 18385 18738 32420 32420 0.13047506853217783 KLPGVMAMF 9 Unmodified _KLPGVMAMF_ 0 0 0 REV__ENSG00000149150|ENST00000278426|SLC43A1 REV__ENSG00000149150|ENST00000278426|SLC43A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3033447265625 2 497.266642 992.51873 0.25936 0.00012897 -0.16996 -8.4513E-05 0.089402 4.4457E-05 497.26660681248865 79.683 0.46878 79.683 79.418 79.887 0 48 19 3 0 0 0 0.58466 1 44163 44163 2.3027 0.4585 1 3507700 + 27477 20983 18386 18739 32421 32421 0.022171476757534947 KLPIERRKPRR 11 Unmodified _KLPIERRKPRR_ 0 0 0 REV__nc|ENSG00000007171|P35228-2|NOS2 REV__nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.9873046875 4 362.987572 1447.92118 0.69143 0.00025098 -0.71648 -0.00026007 -0.025041 -9.0897E-06 363.4891827395231 42.823 0.8625 42.823 42.143 43.006 0 72 43 4 0 0 0 0.74429 1 23265 23265 0.094841 0.011491 1 34869000 + 27478 17003 18387 18740 32422 32422 0.21513985064598273 KLPKMKLPQF 10 Unmodified _KLPKMKLPQF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.9205322265625 3 410.586138 1228.73659 0.9644 0.00039597 -0.3128 -0.00012843 0.6516 0.00026754 410.5860361939315 90.397 0.36421 84.221 84.007 84.372 -6.1757 56 21 3 0 0 0 0.0042881 2 59626 59626;59757 100.71 86.49 1 41427000 27479 3826 18388 18741 32423;32424 32423 0.13136660869849948 KLPNKYEKL 9 Unmodified _KLPNKYEKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2284851074219 3 378.229008 1131.66519 -0.43875 -0.00016595 -0.3565 -0.00013484 -0.79525 -0.00030079 378.22876679095333 20.704 0.15842 20.704 20.625 20.784 0 19 10 3 0 0 0 0.13639 1 10427 10427 29.437 13.699 1 1371800 27480 2669 18389 18742 32425 32425 0.10462864436840391 KLPNKYEKL 9 Unmodified _KLPNKYEKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2285766601562 3 378.229008 1131.66519 -0.55059 -0.00020825 0.16804 6.3556E-05 -0.38256 -0.00014469 378.2289585754958 26.466 0.33495 26.466 26.323 26.658 0 37 15 3 0 0 0 0.44883 1 13573 13573 10.151 2.2052 1 7189700 27481 2669 18389 18742 32426 32426 0.10462864436840391 KLPNKYEKL 9 Unmodified _KLPNKYEKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5628051757812 3 378.229008 1131.66519 0.21391 8.0908E-05 -0.12802 -4.8419E-05 0.085896 3.2489E-05 378.2289868384302 26.248 0.26287 26.275 26.183 26.446 0.026951 24 12 3 0 0 0 0.39143 1 13605 13605 12.873 0.69786 1 4036100 27482 2669 18389 18742 32427 32427 0.10462864436840391 KLPNKYEKL 9 Unmodified _KLPNKYEKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 378.229008 1131.66519 0.10553 3.9913E-05 0.86582 0.00032748 0.97135 0.00036739 378.2290981533452 20.56 0.15828 20.571 20.468 20.626 0.010553 0.042223 0.00061559 NaN 29.437 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 729870 27483 2669 18389 18742 0.10462864436840391 KLPSNLPQL 9 Unmodified _KLPSNLPQL_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.305908203125 2 505.305667 1008.59678 0.039701 2.0061E-05 0.45872 0.00023179 0.49842 0.00025185 505.30593064758494 55.476 0.37615 54.998 54.796 55.173 -0.47798 49 17 4 0 0 0 0.017075 2 30061 30061;30168 66.457 18.111 1 13379000 27484 10075 18390 18743 32428;32429 32428 0.09282619856992369 KLPSNLPQL 9 Unmodified _KLPSNLPQL_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3058776855469 2 505.305667 1008.59678 0.31104 0.00015717 0.23336 0.00011792 0.54439 0.00027509 505.30581071610123 55.135 0.36004 55.066 54.878 55.238 -0.068737 55 17 4 0 0 0 0.017075 2 30004 29908;30004 66.457 18.708 1 25258000 27485 10075 18390 18743 32430;32431 32431 0.09282619856992369 KLPSNLPQL 9 Unmodified _KLPSNLPQL_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3061218261719 2 505.305667 1008.59678 1.0807 0.00054607 2.7554 0.0013923 3.836 0.0019384 505.3078916638959 60.994 0.74736 54.847 54.612 55.359 -6.1478 71 38 3 0 0 0 0.0089732 2 39299 39169;39299 86.332 21.097 1 111580000 27486 10075 18390 18743 32432;32433 32433 0.09282619856992369 KLPVFKYLAE 10 Unmodified _KLPVFKYLAE_ 0 0 0 nc|ENSG00000101452|Q9H5Z1-2|DHX35 nc|ENSG00000101452|Q9H5Z1-2|DHX35 nc|ENSG00000101452|Q9H5Z1-2|DHX35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3578491210938 2 604.357899 1206.70125 0.23646 0.00014291 0.1447 8.7448E-05 0.38116 0.00023036 604.3578163023004 101.93 0.37488 95.754 95.582 95.957 -6.1757 74 21 4 0 0 0 0.72292 1 68444 68444 0.35063 0 1 44710000 27487 16092 18391 18744 32434 32434 0.10616321613701984 KLPVTINKF 9 Unmodified _KLPVTINKF_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000601356.1_1_19:50308891-50309035:+|nuORF ENSG00000196961|ENST00000354293|AP2A1 ENSG00000196961|ENST00000354293|AP2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3324584960938 2 530.331685 1058.64882 NaN NaN NaN NaN NaN NaN NaN 46.005 1 45.977 45.477 46.477 -0.028011 0 0 0 0.49196 1 24738 24738 16.149 2.6412 1 27488 9890 18392 18745 32435 32435 0.12183783270734239 KLQDAEIARL 10 Unmodified _KLQDAEIARL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.8386840820312 2 578.837862 1155.66117 0.66377 0.00038421 0.46977 0.00027192 1.1335 0.00065614 578.8380669665581 38.728 0.25727 38.728 38.577 38.834 0 33 11 4 0 0 0 0.024351 1 20667 20667 71.708 27.85 1 7087900 27489 10028 18393 18746 32436 32436 0.08956774943112578 KLQDAEIARL 10 Unmodified _KLQDAEIARL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.22705078125 3 386.227667 1155.66117 0.42701 0.00016492 -0.05196 -2.0068E-05 0.37505 0.00014485 386.22752790093034 38.707 0.28049 38.707 38.577 38.858 0 31 12 3 0 0 0 0.012329 1 20676 20676 64.692 5.6786 1 8753500 27490 10028 18393 18746 32437 32437 0.08956774943112578 KLQDAEIARL 10 Unmodified _KLQDAEIARL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2284240722656 3 386.227667 1155.66117 1.0768 0.00041589 0.20738 8.0094E-05 1.2842 0.00049598 386.2276866863052 43.171 0.25215 38.406 38.21 38.462 -4.7648 30 16 2 0 0 0 0.0069983 1 26119 26119 72.59 13.577 1 17457000 27491 10028 18393 18746 32438 32438 0.08956774943112578 KLQDAEIARL 10 Unmodified _KLQDAEIARL_ 0 0 0 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.838623046875 2 578.837862 1155.66117 0.70408 0.00040755 -0.29978 -0.00017352 0.4043 0.00023402 578.8376407473788 43.13 0.21862 38.366 38.243 38.462 -4.7648 25 14 2 0 0 0 0.014262 1 26145 26145 80.896 29.266 1 17707000 27492 10028 18393 18746 32439 32439 0.08956774943112578 KLQDGVHII 9 Unmodified _KLQDGVHII_ 0 0 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.8036804199219 2 511.803291 1021.59203 0.3452 0.00017667 -0.64316 -0.00032917 -0.29797 -0.0001525 511.8029590894918 39.474 0.23229 39.474 39.321 39.553 0 22 10 3 0 0 0 0.008513 1 21144 21144 99.755 21.606 1 6409600 27493 9155 18394 18747 32440 32440 0.08209735714228827 KLQDGVHII 9 Unmodified _KLQDGVHII_ 0 0 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11 ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8043823242188 2 511.803291 1021.59203 0.41281 0.00021128 1.6089 0.00082342 2.0217 0.0010347 511.80437828301405 44.337 0.5151 39.485 39.117 39.632 -4.852 47 36 2 0 0 0 0.0082475 2 26971 26971;27132 103.35 10.763 1 15392000 27494 9155 18394 18747 32441;32442 32441 0.08209735714228827 KLQDQIFNL 9 Unmodified _KLQDQIFNL_ 0 0 0 nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10 nc|ENSG00000148908|O43665-2|RGS10 nc|ENSG00000148908|O43665-2|RGS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8134155273438 2 559.813856 1117.61316 0.34803 0.00019483 0.03434 1.9224E-05 0.38237 0.00021406 559.8138951452994 65.459 0.29367 64.975 64.876 65.169 -0.48428 23 13 2 0 0 0 0.078314 1 35730 35730 38.176 3.7738 1 3211500 27495 5972 18395 18748 32443 32443 0.05905701023084475 KLQEEIEKI 9 Unmodified _KLQEEIEKI_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.3262329101562 2 565.326796 1128.63904 -0.33553 -0.00018968 -0.0053316 -3.0141E-06 -0.34086 -0.0001927 565.3269121846205 34.848 0.18612 34.848 34.753 34.939 0 17 9 2 0 0 0 1.719E-10 1 18388 18388 174.48 49.444 1 3810700 27496 4768 18396 18749 32444 32444 0.07986550474697651 KLQEEIEKI 9 Unmodified _KLQEEIEKI_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 565.326796 1128.63904 1.0484 0.0005927 0.65211 0.00036865 1.7005 0.00096135 565.3272038610536 39.339 0.2177 34.888 34.796 35.014 -4.4509 0.019838 0.00032787 NaN 174.48 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6254600 27497 4768 18396 18749 0.07986550474697651 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3236694335938 2 560.324057 1118.63356 0.30776 0.00017245 -0.89134 -0.00049944 -0.58358 -0.00032699 560.3236467218496 66.231 0.3591 65.748 65.586 65.946 -0.48323 44 19 3 0 0 0 0.0044708 2 36128 36128;36234 118.89 57.537 1 10149000 27498 5247 18397 18750 32445;32446 32445 0.07898871682891695 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3243408203125 2 560.324057 1118.63356 1.259 0.00070546 -0.79794 -0.00044711 0.46108 0.00025836 560.3236772341284 65.792 0.35915 65.802 65.633 65.993 0.0095673 51 17 4 0 0 0 0.0044708 2 36027 36027;36130 118.89 50.814 1 25898000 27499 5247 18397 18750 32447;32448 32447 0.07898871682891695 KLQEFLQTL 9 Unmodified _KLQEFLQTL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI;ENST00000568670.5_1_15:89790878-89801939:+|nuORF;ENST00000570110.1_1_15:89790878-89802018:+|nuORF nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.32421875 2 560.324057 1118.63356 1.2529 0.00070205 -0.67022 -0.00037554 0.58272 0.00032651 560.323830959976 91.709 0.81116 85.533 85.042 85.853 -6.1757 136 45 4 0 0 0 0.0038489 3 60485 60364;60485;60607 122.18 60.822 1 84599000 27500 5247 18397 18750 32449;32450;32451 32450 0.07898871682891695 KLQELENRL 9 Unmodified _KLQELENRL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.830322265625 2 571.830037 1141.64552 -0.30225 -0.00017284 0.18873 0.00010792 -0.11352 -6.4916E-05 571.830169602174 33.894 0.20805 33.894 33.783 33.991 0 21 9 3 0 0 0 0.040683 1 17801 17801 49.554 7.7147 1 3883000 27501 763 18398 18751 32452 32452 0.08036488426091637 KLQELENRL 9 Unmodified _KLQELENRL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5559997558594 3 381.555784 1141.64552 -0.61289 -0.00023385 0.51028 0.0001947 -0.10261 -3.9151E-05 381.55604754036733 33.901 0.2257 33.901 33.765 33.991 0 26 10 3 0 0 0 0.014417 1 17808 17808 55.235 24.531 1 5536900 27502 763 18398 18751 32453 32453 0.08036488426091637 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8113403320312 2 567.811313 1133.60807 0.16878 9.5833E-05 -0.97378 -0.00055292 -0.80501 -0.00045709 567.8111836263835 48.994 0.50502 48.994 48.828 49.333 0 57 24 4 0 0 0 0.0082353 1 26943 26943 96.111 42.278 1 26399000 27503 3121 18399 18752 32454 32454 0.04661397160452907 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8119506835938 2 567.811313 1133.60807 0.7349 0.00041729 0.25204 0.00014311 0.98695 0.0005604 567.8113974975147 49.288 0.30488 48.916 48.755 49.06 -0.37172 42 14 4 0 0 0 0.0086904 2 26450 26450;26549 107.19 51.01 1 20727000 27504 3121 18399 18752 32455;32456 32455 0.04661397160452907 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.81103515625 2 567.811313 1133.60807 1.1495 0.00065272 -0.68277 -0.00038768 0.46677 0.00026504 567.8111767071862 54.939 0.36499 49.073 48.914 49.279 -5.8653 62 22 4 0 0 0 0.011671 2 34862 34862;35004 75.761 31.903 1 104810000 27505 3121 18399 18752 32457;32458 32457 0.04661397160452907 KLQELNYNL 9 Unmodified _KLQELNYNL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.811313 1133.60807 0.39798 0.00022598 -1.3621 -0.00077344 -0.96416 -0.00054746 568.3110550347216 48.932 0.21327 48.888 48.791 49.004 -0.04369 -0.080011 -0.0010756 NaN 96.111 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2750400 27506 3121 18399 18752 0.04661397160452907 KLQEQEQLL 9 Unmodified _KLQEQEQLL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8159790039062 2 564.816596 1127.61864 0.54006 0.00030503 -0.24397 -0.0001378 0.29609 0.00016723 564.8161912478104 39.034 0.27339 39.034 38.903 39.177 0 24 12 3 0 0 0 0.0099157 1 20907 20907 88.954 20.873 1 2958200 27507 3290 18400 18753 32459 32459 0.059933798148904316 KLQEQEQLL 9 Unmodified _KLQEQEQLL_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 564.816596 1127.61864 0.70928 0.00040061 -0.5503 -0.00031082 0.15897 8.9791E-05 564.8159095581927 44.071 0.25505 39.306 39.126 39.381 -4.7648 0.13602 -0.00024649 NaN 88.954 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 8209200 27508 3290 18400 18753 0.059933798148904316 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8889770507812 3 385.888874 1154.64479 0.47698 0.00018406 0.24786 9.5645E-05 0.72484 0.00027971 385.88889844934204 53.575 0.29766 53.123 52.963 53.261 -0.45173 44 14 4 0 0 0 0.13231 1 28955 28955 29.841 21.396 1 16556000 27509 669 18401 18754 32460 32460 0.07365693777023807 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.330322265625 2 578.329673 1154.64479 0.52423 0.00030318 0.29223 0.00016901 0.81646 0.00047218 578.3298530273032 53.572 0.27718 53.12 52.984 53.261 -0.45173 38 13 4 0 0 0 0.00035075 1 28956 28956 163.04 97.801 1 10019000 27510 669 18401 18754 32461 32461 0.07365693777023807 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8888549804688 3 385.888874 1154.64479 -0.00021266 -8.2064E-08 -2.7987 -0.00108 -2.7989 -0.0010801 385.8889931345848 53.266 0.28228 53.202 53.044 53.326 -0.063423 22 13 2 0 0 0 0.2324 1 28869 28869 20.415 14.18 1 2517400 27511 669 18401 18754 32462 32462 0.07365693777023807 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3303833007812 2 578.329673 1154.64479 0.38541 0.0002229 0.7924 0.00045827 1.1778 0.00068117 578.3300803665643 53.231 0.20027 53.168 53.061 53.262 -0.063423 15 9 2 0 0 0 0.34748 1 28894 28894 20.415 13.691 1 1283700 27512 669 18401 18754 32463 32463 0.07365693777023807 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8880615234375 3 385.888874 1154.64479 1.2691 0.00048974 -0.53273 -0.00020558 0.73638 0.00028416 385.88841549828726 80.989 0.49374 74.814 74.585 75.078 -6.1757 39 27 2 0 0 0 0.05483 1 53126 53126 43.772 32.873 1 17016000 27513 669 18401 18754 32464 32464 0.07365693777023807 KLQEQIFHL 9 Unmodified _KLQEQIFHL_ 0 0 0 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;ENST00000470876.1_1_5:133900168-133909634:+|nuORF nc|ENSG00000043143|Q9NQC1-3|JADE2 nc|ENSG00000043143|Q9NQC1-3|JADE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.713134765625 2 578.329673 1154.64479 0.90282 0.00052213 -0.93993 -0.00054359 -0.037113 -2.1463E-05 578.3287544875947 80.955 0.49166 74.78 74.624 75.116 -6.1757 38 27 2 0 0 0 0.025388 1 53135 53135 61.602 27.2 1 16489000 27514 669 18401 18754 32465 32465 0.07365693777023807 KLQEQIHRV 9 Unmodified _KLQEQIHRV_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2282409667969 3 384.22789 1149.66184 1.2663 0.00048654 -1.4388 -0.00055282 -0.1725 -6.6279E-05 384.561982168005 18.91 0.30003 16.289 16.139 16.439 -2.6215 33 18 3 0 0 0 0.02676 1 10002 10002 57.108 27.826 1 3558600 27515 4537 18402 18755 32466 32466 0.09299614382825894 KLQKLLEFYHW 11 Unmodified _KLQKLLEFYHW_ 0 0 0 REV__ENSG00000100485|ENST00000216373|SOS2 REV__ENSG00000100485|ENST00000216373|SOS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 752.916259765625 2 752.919187 1503.82382 NaN NaN NaN NaN NaN NaN NaN 14.964 1 14.97 14.47 15.47 0.0057774 0 0 0 0.94301 1 7440 7440 0.35063 0.081612 1 + 27516 18074 18403 18756 32467 32467 0.09206158345136828 KLQLNGFTR 9 Unmodified _KLQLNGFTR_ 0 0 0 REV__ENSG00000273079|ENST00000609686|GRIN2B REV__ENSG00000273079|ENST00000609686|GRIN2B MSMS AL20221201_MKP_PDAC_01 4 359.5461120605469 3 359.545219 1075.61383 NaN NaN NaN NaN NaN NaN NaN 18.794 1 16.172 15.672 16.672 -2.6215 0 0 0 0.56988 1 9919 9919 13.615 1.3742 1 + 27517 24633 18404 18757 32468 32468 0.07904540462777732 KLQNLNIFL 9 Unmodified _KLQNLNIFL_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8347778320312 2 551.834591 1101.65463 0.25236 0.00013926 0.57878 0.00031939 0.83113 0.00045865 551.8349846451963 75.423 0.42041 75.469 75.245 75.665 0.045967 53 19 4 0 0 0 0.040683 2 41630 41525;41630 64.236 16.488 1 15570000 27518 601 18405 18758 32469;32470 32470 0.10786881782405544 KLQTPQGKRK 10 Unmodified _KLQTPQGKRK_ 0 0 0 ENST00000517951.5_1_5:156822576-156936463:-|nuORF;ENSG00000135074|ENST00000257527|ADAM19;nc|ENSG00000135074|Q9H013|ADAM19 ENST00000517951.5_1_5:156822576-156936463:-|nuORF ENST00000517951.5_1_5:156822576-156936463:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8963623046875 3 395.247173 1182.71969 0.017348 6.8566E-06 -0.6011 -0.00023758 -0.58375 -0.00023073 395.24688156819576 34.082 0.5012 34.111 33.745 34.246 0.028934 38 22 3 0 0 0 0.23999 1 18018 18018 1.4551 0.34536 1 3830300 27519 4667 18406 18759 32471 32471 0.1356387630826248 KLQTPRINKF 10 Unmodified _KLQTPRINKF_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7;nc|ENSG00000184611|Q9NS40-2|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5879821777344 3 415.587307 1243.74009 -0.17374 -7.2203E-05 1.347 0.00055978 1.1732 0.00048757 415.58795214098353 30.074 0.37902 30.104 29.921 30.3 0.030106 49 15 5 0 0 0 0.47059 1 15697 15697 17.863 3.0253 1 10016000 27520 9277 18407 18760 32472 32472 0.12797046968057657 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2308349609375 3 391.2313 1170.67207 -0.57933 -0.00022665 -0.64167 -0.00025104 -1.221 -0.00047769 391.23103705635015 29.793 0.18505 29.793 29.682 29.867 0 21 11 2 0 0 0 0.073961 1 15456 15456 39.213 3.6007 1 13590000 27521 10619 18408 18761 32473 32473 0.09356177317408765 KLREDLERL 9 Unmodified _KLREDLERL_ 0 0 0 ENST00000496813.5_1_6:33239896-33244045:+|nuORF;ENSG00000231500|ENST00000439602|RPS18 ENST00000496813.5_1_6:33239896-33244045:+|nuORF ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 391.2313 1170.67207 1.7068 0.00066775 0.2663 0.00010418 1.9731 0.00077193 391.23135618909583 33.807 0.30231 29.822 29.643 29.946 -3.9853 0.014625 0.00059173 NaN 39.213 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 5528900 27522 10619 18408 18761 0.09356177317408765 KLRELNEKL 9 Unmodified _KLRELNEKL_ 0 0 0 nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25 nc|ENSG00000109762|Q9H3E2-2|SNX25 nc|ENSG00000109762|Q9H3E2-2|SNX25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.568359375 3 381.567912 1141.68191 -0.46006 -0.00017554 -0.79685 -0.00030405 -1.2569 -0.0004796 381.5677166539324 20.324 0.15886 20.324 20.227 20.386 0 22 11 3 0 0 0 0.46162 1 10212 10212 9.544 0 1 923700 27523 2671 18409 18762 32474 32474 0.11673365322781137 KLRELNEKL 9 Unmodified _KLRELNEKL_ 0 0 0 nc|ENSG00000109762|Q9H3E2-2|SNX25;nc|ENSG00000109762|Q9H3E2|SNX25;ENSG00000109762|ENST00000652585|SNX25 nc|ENSG00000109762|Q9H3E2-2|SNX25 nc|ENSG00000109762|Q9H3E2-2|SNX25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5673522949219 3 381.567912 1141.68191 -0.40035 -0.00015276 -0.97073 -0.0003704 -1.3711 -0.00052316 381.5678551927908 20.172 0.13293 20.2 20.113 20.246 0.028357 10 5 3 0 0 0 0.43515 1 10206 10206 10.8 1.2555 1 727210 27524 2671 18409 18762 32475 32475 0.11673365322781137 KLREVLLFY 9 Unmodified _KLREVLLFY_ 0 0 0 REV__ENSG00000170145|ENST00000304987|SIK2 REV__ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2415466308594 3 394.241137 1179.70158 0.26104 0.00010291 -0.33791 -0.00013322 -0.076874 -3.0307E-05 394.24098841545964 50.908 1.6656 50.854 50.628 52.294 -0.053871 162 82 5 0 0 0 0.39143 1 27654 27654 12.873 3.3286 1 251190000 + 27525 22448 18410 18763 32476 32476 0.11891741333556638 KLREVLLFY 9 Unmodified _KLREVLLFY_ 0 0 0 REV__ENSG00000170145|ENST00000304987|SIK2 REV__ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2413635253906 3 394.241137 1179.70158 0.48487 0.00019116 0.42728 0.00016845 0.91215 0.00035961 394.24125483109884 56.188 0.66829 50.211 49.913 50.581 -5.9769 123 38 4 0 0 0 0.39143 1 35946 35946 12.873 3.3286 1 450010000 + 27526 22448 18410 18763 32477 32477 0.11891741333556638 KLREVLLFY 9 Unmodified _KLREVLLFY_ 0 0 0 REV__ENSG00000170145|ENST00000304987|SIK2 REV__ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2417297363281 3 394.241137 1179.70158 1.1763 0.00046374 0.037603 1.4825E-05 1.2139 0.00047856 394.2411146704641 74.35 2.2542 68.175 67.326 69.58 -6.1757 343 118 4 0 0 0 0.39143 1 48370 48370 12.873 0 1 119030000 + 27527 22448 18410 18763 32478 32478 0.11891741333556638 KLRGEGKHLPF 11 Unmodified _KLRGEGKHLPF_ 0 0 0 REV__ENSG00000185101|ENST00000332826|ANO9 REV__ENSG00000185101|ENST00000332826|ANO9 MSMS AL20221201_MKP_PDAC_01 4 641.3770141601562 2 641.374946 1280.73534 NaN NaN NaN NaN NaN NaN NaN 40.201 1 35.672 35.172 36.172 -4.5294 0 0 0 0.79635 1 23981 23981 12.241 2.8575 1 + 27528 23472 18411 18764 32479 32479 0.10620162825307489 KLRHIKLY 8 Unmodified _KLRHIKLY_ 0 0 0 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.2132568359375 3 357.565954 1069.67603 1.8053 0.0006455 -4.1594 -0.0014873 -2.3541 -0.00084175 357.5643321501077 20.108 0.11944 17.451 17.351 17.471 -2.6564 9 6 2 0 0 0 8.7369 1 10682 10682 4.3292 1.334 1 1507900 + 27529 23017 18412 18765 32480 32480 0.1439831160180347 KLRHVFLF 8 Unmodified _KLRHVFLF_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR;ENST00000576964.5_1_17:953371-986816:-|nuORF;ENST00000487968.5_1_22:23626151-23631864:+|nuORF;nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3281860351562 2 530.326737 1058.63892 NaN NaN NaN NaN NaN NaN NaN 101.69 1 101.65 101.15 102.15 -0.045853 0 0 0 0.97444 1 56496 56496 2.8892 0 1 27530 9501 18413 18766 32481 32481 0.11194640056032767 KLRKRWPLRTN 11 Unmodified _KLRKRWPLRTN_ 0 0 0 REV__ENST00000577583.1_1_17:27835094-27837891:+|nuORF REV__ENST00000577583.1_1_17:27835094-27837891:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.97314453125 3 489.972155 1466.89463 NaN NaN NaN NaN NaN NaN NaN 1.324 1 1.3034 0.80338 1.8034 -0.020623 0 0 0 0.94313 1 686 686 0.073264 0.073264 1 + 27531 29033 18414 18767 32482 32482 0.17986296173307892 KLRLINGLY 9 Unmodified _KLRLINGLY_ 0 0 0 REV__ENST00000600765.1_1_19:51897835-51906631:+|nuORF REV__ENST00000600765.1_1_19:51897835-51906631:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2811279296875 2 545.342584 1088.67061 NaN NaN NaN NaN NaN NaN NaN 92.935 1 92.477 91.977 92.977 -0.4574 0 0 0 0.82396 1 50791 50791 4.756 0 1 + 27532 29252 18415 18768 32483 32483 0.1298258801934935 KLRMYRCLP 9 Unmodified _KLRMYRCLP_ 0 0 0 REV__ENST00000380502.7_2_9:19056084-19056171:-|nuORF REV__ENST00000380502.7_2_9:19056084-19056171:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8872375488281 3 393.887823 1178.64164 -0.47755 -0.0001881 -0.12474 -4.9133E-05 -0.60229 -0.00023723 393.8876842651764 25.191 0.19745 25.191 25.108 25.305 0 18 9 2 0 0 0 0.58145 1 12905 12905 2.4985 0 1 1193700 + 27533 26313 18416 18769 32484 32484 0.059464041270302914 KLRMYRCLP 9 Unmodified _KLRMYRCLP_ 0 0 0 REV__ENST00000380502.7_2_9:19056084-19056171:-|nuORF REV__ENST00000380502.7_2_9:19056084-19056171:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 393.887823 1178.64164 0.83298 0.0003281 -0.94711 -0.00037305 -0.11412 -4.4952E-05 394.22163770048405 28.35 0.30069 25.202 25.003 25.303 -3.1482 0.0056674 -0.00053376 NaN 2.4985 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8779400 + 27534 26313 18416 18769 0.059464041270302914 KLRRNRMS 8 Unmodified _KLRRNRMS_ 0 0 0 REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.810302734375 2 530.811459 1059.60837 -0.10581 -5.6168E-05 -0.39265 -0.00020842 -0.49846 -0.00026459 530.8112853757874 39.604 0.29955 39.307 39.112 39.412 -0.29716 31 13 3 0 0 0 0.80383 1 20949 20949 4.3292 0.38484 1 3129500 + 27535 25276 18417 18770 32485 32485 0.0809453839933667 KLRRPATLQ 9 Unmodified _KLRRPATLQ_ 0 0 0 REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF REV__ENST00000358689.8_2_8:23290247-23290583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5644836425781 3 361.564614 1081.67201 0.010181 3.6811E-06 0.051383 1.8578E-05 0.061564 2.226E-05 361.56472403385544 18.837 0.13409 18.843 18.767 18.901 0.0060463 10 6 2 0 0 0 0.57331 1 9560 9560 1.7423 0.41263 1 833390 + 27536 25880 18418 18771 32486 32486 0.1344422210806897 KLRSAKMI 8 Unmodified _KLRSAKMI_ 0 0 0 REV__ENST00000518390.5_1_8:87492545-87498726:-|nuORF REV__ENST00000518390.5_1_8:87492545-87498726:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7844848632812 2 473.796955 945.579357 1.0544 0.00049956 -0.73685 -0.00034912 0.31751 0.00015044 473.79689299254096 93.933 0.15986 87.758 87.663 87.823 -6.1757 21 8 4 0 0 0 0.67481 1 62152 62152 19.439 0 1 52065000 + 27537 28245 18419 18772 32487 32487 0.10439001050337993 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.29833984375 2 523.298039 1044.58152 0.40728 0.00021313 -0.028346 -1.4833E-05 0.37894 0.0001983 523.2980440434026 43.334 0.40466 43.334 43.121 43.526 0 62 19 4 0 0 0 0.0087807 1 23564 23564 106.94 40.483 1 76090000 27538 2089 18420 18773 32488 32488 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2979125976562 2 523.298039 1044.58152 0.057496 3.0088E-05 -0.52939 -0.00027703 -0.4719 -0.00024694 523.2977513694597 43.514 0.1704 43.204 43.124 43.295 -0.31039 10 7 2 0 0 0 0.01958 1 23194 23194 63.961 24.011 1 5608200 27539 2089 18420 18773 32489 32489 0.061017082691250835 KLSDLQTQL 9 Unmodified _KLSDLQTQL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.29833984375 2 523.298039 1044.58152 1.2347 0.00064611 -0.48261 -0.00025255 0.75207 0.00039356 523.297751716066 49.613 0.58348 44.074 43.793 44.377 -5.5391 92 36 3 0 0 0 0.0089732 2 31004 30874;31004 86.332 26.258 1 152460000 27540 2089 18420 18773 32490;32491 32491 0.061017082691250835 KLSEIPLTL 9 Unmodified _KLSEIPLTL_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3177490234375 2 507.3157 1012.61685 -0.35446 -0.00017982 1.0773 0.00054655 0.72287 0.00036672 507.3162240307165 69.432 0.37016 68.953 68.764 69.134 -0.47903 41 15 4 0 0 0 0.036857 1 37903 37903 51.63 0 1 9865700 27541 410 18421 18774 32492 32492 0.11104370796954299 KLSEKKKSVL 10 Unmodified _KLSEKKKSVL_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3739624023438 2 580.374081 1158.73361 -0.17858 -0.00010364 0.70851 0.0004112 0.52993 0.00030756 580.374330081336 103.38 0.23789 103.33 103.21 103.45 -0.047928 23 9 3 0 0 0 0.72292 1 57412 57412 0.35063 0 1 2160300 27542 16367 18422 18775 32493 32493 0.160591090167145 KLSEKKQAF 9 Unmodified _KLSEKKQAF_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.8153686523438 2 539.816399 1077.61824 -0.3385 -0.00018273 0.10179 5.4948E-05 -0.23671 -0.00012778 539.8166193557383 33.255 0.16085 33.255 33.166 33.327 0 17 7 3 0 0 0 0.16226 1 17435 17435 26.884 0.61551 1 1224000 27543 9830;2746 18423 18776 32494 32494 0.0825400488570267 KLSELEAAL 9 Unmodified _KLSELEAAL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2823791503906 2 487.281857 972.549162 0.023429 1.1417E-05 -0.62072 -0.00030247 -0.59729 -0.00029105 487.28146545994366 51.833 0.78024 51.833 51.622 52.402 0 90 34 5 0 0 0 0.013041 1 28600 28600 71.922 7.686 1 659070000 + 27544 165;150 18424 18777 32495 32495 0.061789208661252815 KLSELEAAL 9 Unmodified _KLSELEAAL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2806091308594 2 487.281857 972.549162 0.48159 0.00023467 0.6223 0.00030324 1.1039 0.0005379 487.282023926586 51.921 0.25163 51.862 51.731 51.983 -0.058918 33 11 4 0 0 0 0.044011 1 28088 28088 47.749 1.7277 1 6059200 + 27545 165;150 18424 18777 32496 32496 0.061789208661252815 KLSELEAAL 9 Unmodified _KLSELEAAL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2816772460938 2 487.281857 972.549162 0.351 0.00017104 0.60703 0.0002958 0.95803 0.00046683 487.28212768467864 58.16 0.82673 52.133 51.819 52.645 -6.0275 129 45 4 0 0 0 0.011671 1 37068 37068 75.761 10.526 1 642070000 + 27546 165;150 18424 18777 32497 32497 0.061789208661252815 KLSELEAAL 9 Unmodified _KLSELEAAL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 973.5555419921875 1 973.556438 972.549162 -0.013599 -1.3239E-05 0.26124 0.00025433 0.24764 0.00024109 973.5567718443558 58.147 0.30808 52.12 51.957 52.265 -6.0275 29 16 2 0 0 0 0.008513 1 37161 37161 99.755 33.299 1 24019000 + 27547 165;150 18424 18777 32498 32498 0.061789208661252815 KLSELEAAL 9 Unmodified _KLSELEAAL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MSMS AL20221201_MKP_PDAC_01 4 487.2822570800781 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 58.641 1 52.567 52.067 53.067 -6.0745 0 0 0 0.049786 1 37587 37587 57.722 11.701 1 + 27548 165;150 18424 18777 32499 32499 0.061789208661252815 KLSGNWSPVL 10 Unmodified _KLSGNWSPVL_ 0 0 0 REV__ENSG00000087338|ENST00000282570|GMCL1 REV__ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5419616699219 3 367.541475 1099.60259 1.1671 0.00042897 0.081959 3.0123E-05 1.2491 0.00045909 367.54150735342455 44.876 0.43371 40.024 39.815 40.249 -4.852 76 30 3 0 0 0 0.42143 1 27342 27342 22.775 9.1601 1 39814000 + 27549 17787 18425 18778 32500 32500 0.05677718368656315 KLSLRNFIEF 10 Unmodified _KLSLRNFIEF_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5824584960938 3 422.911679 1265.71321 0.2379 0.00010061 0.020629 8.7241E-06 0.25853 0.00010933 422.9114795802444 48.86 0.67901 48.817 48.516 49.195 -0.04369 112 33 6 0 0 0 0.59286 1 26307 26307 11.518 11.518 1 265230000 27550 10779 18426 18779 32501 32501 0.09097938356876512 KLSLRYKRFI 10 Unmodified _KLSLRYKRFI_ 0 0 0 ENST00000559076.1_1_15:34529505-34530591:-|nuORF ENST00000559076.1_1_15:34529505-34530591:-|nuORF ENST00000559076.1_1_15:34529505-34530591:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.9459533691406 3 441.946835 1322.81868 1.7098 0.00075564 -1.0989 -0.00048567 0.61088 0.00026997 441.9456267522308 104.58 0.11668 98.408 98.36 98.476 -6.1757 11 5 3 0 0 0 0.71276 1 70047 70047 0.62683 0.21856 1 7788300 27551 15289 18427 18780 32502 32502 0.1701789927315076 KLSTVRVFL 9 Unmodified _KLSTVRVFL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8375854492188 2 531.837134 1061.65972 -0.10556 -5.6142E-05 0.2963 0.00015758 0.19073 0.00010144 531.8371802528609 51.524 0.35037 51.471 51.306 51.657 -0.053871 51 17 4 0 0 0 0.039985 2 27850 27850;27953 49.933 9.9757 1 38592000 27552 1104 18428 18781 32503;32504 32503 0.1313518564502374 KLSTVRVFL 9 Unmodified _KLSTVRVFL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8382568359375 2 531.837134 1061.65972 1.2152 0.00064631 -0.97159 -0.00051673 0.24365 0.00012958 531.8370450434489 88.38 0.78869 82.204 81.652 82.441 -6.1757 84 43 2 0 0 0 0.040683 1 58061 58061 49.554 1.8056 1 35853000 27553 1104 18428 18781 32505 32505 0.1313518564502374 KLSTVRVFL 9 Unmodified _KLSTVRVFL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8944091796875 3 354.893848 1061.65972 1.9324 0.00068578 -0.51427 -0.00018251 1.4181 0.00050327 354.89374027428977 88.388 0.74805 82.212 81.693 82.441 -6.1757 70 41 2 0 0 0 0.18144 2 58254 58120;58254 18.721 9.1773 1 24049000 27554 1104 18428 18781 32506;32507 32507 0.1313518564502374 KLTEIRHEV 9 Unmodified _KLTEIRHEV_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2;nc|ENSG00000121741|Q9UBW7-2|ZMYM2;ENST00000382881.7_1_13:20532931-20593821:+|nuORF ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.5518188476562 3 375.552262 1123.63496 -0.49747 -0.00018683 0.034664 1.3018E-05 -0.46281 -0.00017381 375.55210819560864 19.276 0.12543 19.276 19.2 19.326 0 12 7 2 0 0 0 0.42 1 9618 9618 11.518 6.1152 1 1374400 27555 3595 18429 18782 32508 32508 0.07808505771640739 KLTELENEL 9 Unmodified _KLTELENEL_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;ENST00000511503.1_1_6:168369768-168370612:+|nuORF nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.768798828125 2 544.795329 1087.5761 0.45558 0.0002482 0.83259 0.00045359 1.2882 0.00070179 544.795855624818 47.374 0.21893 47.374 47.231 47.45 0 19 9 3 0 0 0 0.11314 1 25938 25938 31.268 2.1868 1 1974500 27556 4210 18430 18783 32509 32509 0.03581984686661599 KLTENLVAL 9 Unmodified _KLTENLVAL_ 0 0 0 ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18;ENST00000476153.6_1_1:205492708-205496295:+|nuORF;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17 ENSG00000117266|ENST00000429964|CDK18;ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8058776855469 2 500.8055 999.596446 0.49632 0.00024856 0.92438 0.00046293 1.4207 0.0007115 500.80535986457596 62.085 0.38091 55.91 55.741 56.122 -6.1757 30 21 2 0 0 0 0.017075 1 40127 40127 66.457 6.3828 1 59220000 27557 819;3292 18431 18784 32510 32510 0.09663200137140393 KLTEVHEEL 9 Unmodified _KLTEVHEEL_ 0 0 0 nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000466803.1_1_1:60330814-60338634:+|nuORF nc|ENSG00000134709|Q9UJC3-2|HOOK1 nc|ENSG00000134709|Q9UJC3-2|HOOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2943725585938 2 549.295496 1096.57644 -0.48751 -0.00026779 0.088107 4.8397E-05 -0.39941 -0.00021939 549.2957984875302 28.108 0.15502 28.108 28.034 28.189 0 22 9 3 0 0 0 0.029718 1 14496 14496 55.503 21.101 1 3130100 27558 4632 18432 18785 32511 32511 0.03201404406536312 KLTEVHEEL 9 Unmodified _KLTEVHEEL_ 0 0 0 nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000466803.1_1_1:60330814-60338634:+|nuORF nc|ENSG00000134709|Q9UJC3-2|HOOK1 nc|ENSG00000134709|Q9UJC3-2|HOOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.29638671875 2 549.295496 1096.57644 0.65395 0.00035921 -0.54762 -0.0003008 0.10634 5.8411E-05 549.2954961631328 31.893 0.27328 28.197 28.066 28.339 -3.6958 22 14 2 0 0 0 0.014417 1 18127 18127 69.105 23.084 1 13924000 27559 4632 18432 18785 32512 32512 0.03201404406536312 KLTHSHPPGN 10 Unmodified _KLTHSHPPGN_ 0 0 0 REV__ENSG00000094804|ENST00000209728|CDC6 REV__ENSG00000094804|ENST00000209728|CDC6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.8817749023438 3 363.192957 1086.55704 1.8672 0.00067816 3.9301 0.0014274 5.7974 0.0021056 363.19557633456446 21.471 0.055403 18.736 18.711 18.767 -2.7348 8 5 2 0 0 0 0.23257 1 11498 11498 7.0371 1.2537 1 1645100 + 27560 17929 18433 18786 32513 32513 0.01722492906287698 KLTKSKVQVF 10 Unmodified _KLTKSKVQVF_ 0 0 0 nc|ENSG00000166401|P50452-3|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8 nc|ENSG00000166401|P50452-3|SERPINB8 nc|ENSG00000166401|P50452-3|SERPINB8 MSMS AL20221201_MKP_PDAC_01 4 393.2489318847656 3 393.248291 1176.72304 NaN NaN NaN NaN NaN NaN NaN 105.43 1 99.257 98.757 99.757 -6.1757 0 0 0 0.9997 1 70647 70647 0.69767 0 1 27561 7482 18434 18787 32514 32514 0.14175126362283663 KLTLRYVL 8 Unmodified _KLTLRYVL_ 0 0 0 REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2571482968907173|0.2447948664736123|3.73|179.0|2|1|sense REV__LTR8_dup2971|chr17:8380695-8381392:+|3.2571482968907173|0.2447948664736123|3.73|179.0|2|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.322509765625 2 503.326402 1004.63825 0.39375 0.00019819 -2.1201 -0.0010671 -1.7263 -0.00086889 503.3256903855607 69.602 0.39556 69.633 69.431 69.826 0.030922 49 21 3 0 0 0 0.58039 1 38175 38175 27.629 2.9549 1 11263000 + 27562 29455 18435 18788 32515 32515 0.13611800616320124 KLTRYRSTL 9 Unmodified _KLTRYRSTL_ 0 0 0 ENST00000261415.11_1_5:74715243-74722230:-|nuORF ENST00000261415.11_1_5:74715243-74722230:-|nuORF ENST00000261415.11_1_5:74715243-74722230:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8682556152344 3 379.89614 1136.66659 -0.55836 -0.00021212 0.40888 0.00015533 -0.14948 -5.6789E-05 379.89630546717615 18.032 0.1971 18.032 17.946 18.143 0 57 23 3 0 0 0 0.21822 1 8997 8997 2.4985 0 1 4344700 27563 11241 18436 18789 32516 32516 0.10372498525612173 KLTVIVPD 8 Unmodified _KLTVIVPD_ 0 0 0 ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.54736328125 1 884.545145 883.537869 -0.38085 -0.00033688 0.82051 0.00072578 0.43966 0.0003889 884.5459498275242 58.409 0.29054 57.918 57.759 58.049 -0.49079 23 13 2 0 0 0 0.40035 1 31723 31723 44.407 0 1 4343200 27564 2443;14158 18437 18790 32517 32517 0.09144143562650697 KLVDDLGKVK 10 Unmodified _KLVDDLGKVK_ 0 0 0 nc|ENSG00000205669|Q3I5F7-2|ACOT6;ENSG00000205669|ENST00000645972|ACOT6 nc|ENSG00000205669|Q3I5F7-2|ACOT6 nc|ENSG00000205669|Q3I5F7-2|ACOT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.0209350585938 2 557.845156 1113.67576 NaN NaN NaN NaN NaN NaN NaN 49.55 1 49.501 49.001 50.001 -0.048824 0 0 0 0.95736 1 26772 26772 5.2969 0.066215 1 27565 10376 18438 18791 32518 32518 0.12346847091271229 KLVDFVIHF 9 Unmodified _KLVDFVIHF_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-4|ARPC4;ENST00000440787.5_1_3:9845376-9847896:+|nuORF ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8253784179688 2 559.32386 1116.63317 0.47374 0.00026497 -0.25182 -0.00014085 0.22192 0.00012412 559.3243795201081 77.081 0.46175 77.131 76.91 77.372 0.05011 34 18 3 0 0 0 0.07916 1 42554 42554 37.974 12.575 1 3122100 27566 10683 18439 18792 32519 32519 0.07951496753685205 KLVDLEERFAL 11 Unmodified _KLVDLEERFAL_ 0 0 0 REV__ENST00000587818.1_1_19:45668074-45681461:-|nuORF REV__ENST00000587818.1_1_19:45668074-45681461:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.9271850585938 3 444.922244 1331.7449 1.0669 0.00047468 2.1738 0.00096715 3.2406 0.0014418 445.25798172354695 90.458 0.13838 84.283 84.186 84.324 -6.1757 10 7 2 0 0 0 0.67477 1 59736 59736 6.6235 0.3891 1 5600900 + 27567 17008 18440 18793 32520 32520 0.09229886320190417 KLVDWVNITY 10 Unmodified _KLVDWVNITY_ 0 0 0 REV__nc|ENSG00000069966|O14775-3|GNB5 REV__nc|ENSG00000069966|O14775-3|GNB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8425903320312 2 625.842613 1249.67067 NaN NaN NaN NaN NaN NaN NaN 55.62 1 55.552 55.052 56.052 -0.068737 0 0 0 0.78298 1 30231 30231 13.042 0 1 + 27568 17458 18441 18794 32521 32521 0.05582543228661052 KLVGGPTAP 9 Unmodified _KLVGGPTAP_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant;LAMA3-TAF4B|1|fusion nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2529602050781 2 420.252903 838.491253 0.37034 0.00015564 -0.62095 -0.00026096 -0.25061 -0.00010532 420.25264513298004 67.124 0.38382 66.642 66.46 66.844 -0.48238 36 17 3 0 0 0 0.5029 1 36731 36731 7.2892 1.5288 1 4928300 27569 748 18442 18795 32522 32522 0.06554703731364953 KLVKEVIAV 9 Unmodified _KLVKEVIAV_ 0 0 0 ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB ENSG00000105379|ENST00000309244|ETFB ENSG00000105379|ENST00000309244|ETFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.8343811035156 2 499.83406 997.653567 0.30277 0.00015134 0.59768 0.00029874 0.90045 0.00045008 499.8342695832753 37.746 0.24132 37.746 37.604 37.846 0 27 11 3 0 0 0 0.021948 1 20071 20071 61.602 7.7691 1 8145000 27570 2313 18443 18796 32523 32523 0.1546466741350514 KLVKEVIAV 9 Unmodified _KLVKEVIAV_ 0 0 0 ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB ENSG00000105379|ENST00000309244|ETFB ENSG00000105379|ENST00000309244|ETFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.8334655761719 2 499.83406 997.653567 -0.16613 -8.3035E-05 0.23494 0.00011743 0.068814 3.4395E-05 499.83398563368723 37.958 0.25814 37.687 37.544 37.802 -0.27133 26 12 3 0 0 0 0.012228 1 19941 19941 74.2 15.521 1 6839500 27571 2313 18443 18796 32524 32524 0.1546466741350514 KLVKEVIAV 9 Unmodified _KLVKEVIAV_ 0 0 0 ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB ENSG00000105379|ENST00000309244|ETFB ENSG00000105379|ENST00000309244|ETFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8347473144531 2 499.83406 997.653567 1.1288 0.0005642 -0.0018313 -9.1535E-07 1.1269 0.00056329 499.83396073998136 42.799 0.40313 38.114 37.902 38.305 -4.6846 64 25 3 0 0 0 0.0081887 2 25925 25794;25925 103.42 51.326 1 49624000 27572 2313 18443 18796 32525;32526 32526 0.1546466741350514 KLVLRKLRRKA 11 Unmodified _KLVLRKLRRKA_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.984130859375 2 690.98553 1379.95651 NaN NaN NaN NaN NaN NaN NaN 18.585 1 18.591 18.091 19.091 0.0060463 0 0 0 0.9435 1 9424 9424 0 0 1 27573 9407 18444 18797 32527 32527 0.281726475924188 KLVNILVQL 9 Unmodified _KLVNILVQL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3478393554688 2 520.347335 1038.68012 0.38331 0.00019945 -0.40689 -0.00021173 -0.023589 -1.2274E-05 520.3469977635175 78.76 0.40979 78.815 78.627 79.037 0.054291 25 15 2 0 0 0 0.010818 1 43483 43483 78.149 32.128 1 3269800 27574 3160 18445 18798 32528 32528 0.16232356304840323 KLVRSPNI 8 Unmodified _KLVRSPNI_ 0 0 0 nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENSG00000010404|ENST00000340855|IDS nc|ENSG00000241489|P22304-3|IDS nc|ENSG00000241489|P22304-3|IDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7923583984375 2 463.792727 925.5709 -0.18793 -8.7161E-05 -1.2455 -0.00057765 -1.4334 -0.00066481 463.7926926148956 27.92 0.16097 27.92 27.804 27.965 0 19 7 3 0 0 0 0.75262 1 14389 14389 12.532 0 1 1840200 27575 423 18446 18799 32529 32529 0.1051377040537318 KLVSCLREL 9 Unmodified _KLVSCLREL_ 0 0 0 REV__nc|ENSG00000171208|Q8NC67-3|NETO2 REV__nc|ENSG00000171208|Q8NC67-3|NETO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.811279296875 2 530.812802 1059.61105 0.26061 0.00013834 -2.1011 -0.0011153 -1.8405 -0.00097694 530.8115917245071 39.227 0.25995 39.238 39.106 39.366 0.011456 22 11 3 0 0 0 0.52844 1 20925 20925 5.7319 0 1 1083800 + 27576 22541 18447 18800 32530 32530 0.08362949013621801 KLWDIINVNI 10 Unmodified _KLWDIINVNI_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.35888671875 2 614.358431 1226.70231 0.64976 0.00039918 0.89638 0.0005507 1.5461 0.00094988 614.3588583634676 89.776 0.26846 89.818 89.671 89.94 0.042175 17 9 2 0 0 0 0.036856 1 49938 49938 74.2 30.427 1 8346400 27577 2107 18448 18801 32531 32531 0.09802535982635163 KLWDIINVNI 10 Unmodified _KLWDIINVNI_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.3576049804688 2 614.358431 1226.70231 0.36361 0.00022339 0.21027 0.00012918 0.57388 0.00035257 614.35863227348 99.665 0.14184 93.489 93.399 93.541 -6.1757 21 8 3 0 0 0 0.0058437 1 66414 66414 110.55 46.592 1 80652000 27578 2107 18448 18801 32532 32532 0.09802535982635163 KLWEMDNMLI 10 2 Oxidation (M) _KLWEM(Oxidation (M))DNM(Oxidation (M))LI_ KLWEM(1)DNM(1)LI KLWEM(51)DNM(51)LI 0 0 2 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8176879882812 2 662.817424 1323.62029 0.28362 0.00018799 1.5608 0.0010345 1.8444 0.0012225 662.8184541313511 65.147 0.46906 58.971 58.752 59.221 -6.1757 49 25 3 0 0 0 0.078742 1 42218 42218 51.415 27.625 1 18870000 27579 8794 18449 18802 32533 32533 1484;1485 -0.028570704830144678 KLWEMDNMLI 10 Oxidation (M) _KLWEM(Oxidation (M))DNMLI_ KLWEM(0.999)DNM(0.001)LI KLWEM(30)DNM(-30)LI 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8187866210938 2 654.819966 1307.62538 0.79604 0.00052126 -0.33589 -0.00021995 0.46015 0.00030132 654.8197964814101 90.105 0.74175 83.93 83.598 84.34 -6.1757 65 42 3 0 0 0 0.047829 2 59375 59375;59501 59.368 40.111 2 13679000 27580 8794 18449 18803 32534;32535 32534 1484;1485 -0.016127666204056368 KLWEMDNMLI 10 Oxidation (M) _KLWEMDNM(Oxidation (M))LI_ KLWEMDNM(1)LI KLWEM(-74)DNM(74)LI 0 0 1 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8209228515625 2 654.819966 1307.62538 0.90503 0.00059263 -0.13027 -8.5302E-05 0.77477 0.00050733 654.8198070456504 91.674 0.59426 85.499 85.145 85.74 -6.1757 84 32 3 0 0 0 4.814E-06 3 60541 60418;60541;60662 129.77 73.595 2 34590000 27581 8794 18449 18803 32536;32537;32538 32537 1484;1485 -0.016127666204056368 KLWEMDNMLI 10 Unmodified _KLWEMDNMLI_ 0 0 0 ENSG00000179010|ENST00000382581|MRFAP1;ENSG00000178988|ENST00000320848|MRFAP1L1 ENSG00000179010|ENST00000382581|MRFAP1 ENSG00000179010|ENST00000382581|MRFAP1 MSMS AL20221201_MKP_PDAC_01 4 646.8223266601562 2 646.822509 1291.63047 NaN NaN NaN NaN NaN NaN NaN 99.015 1 92.839 92.339 93.339 -6.1757 0 0 0 0.048504 1 65820 65820 57.722 28.64 1 27582 8794 18449 18804 32539 32539 -0.0036846275777406845 KLWERIIAA 9 Unmodified _KLWERIIAA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3341674804688 2 550.334759 1098.65496 0.25942 0.00014277 -0.55469 -0.00030526 -0.29527 -0.0001625 550.3342965611544 48.868 0.25153 48.825 48.694 48.946 -0.04369 27 12 3 0 0 0 0.13231 1 26368 26368 29.841 16.226 1 4862100 27583 1104 18450 18805 32540 32540 0.10958301502273571 KLWERIIAA 9 Unmodified _KLWERIIAA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2255554199219 3 367.225598 1098.65496 0.18449 6.775E-05 0.08055 2.958E-05 0.26504 9.733E-05 367.2256165973353 48.884 0.19293 48.841 48.734 48.927 -0.04369 16 9 2 0 0 0 0.38785 1 26390 26390 8.9762 0.82072 1 2992400 27584 1104 18450 18805 32541 32541 0.10958301502273571 KLWERIIAA 9 Unmodified _KLWERIIAA_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.335205078125 2 550.334759 1098.65496 1.1291 0.00062141 -0.65402 -0.00035993 0.47513 0.00026148 550.3344234337228 89.459 0.26937 83.283 83.127 83.396 -6.1757 26 14 2 0 0 0 0.0093064 1 59026 59026 83.429 39.447 1 15509000 27585 1104 18450 18805 32542 32542 0.10958301502273571 KLWGPYIKLV 10 Unmodified _KLWGPYIKLV_ 0 0 0 REV__ENSG00000145214|ENST00000273814|DGKQ REV__ENSG00000145214|ENST00000273814|DGKQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2519226074219 3 406.253265 1215.73797 NaN NaN NaN NaN NaN NaN NaN 37.681 1 37.698 37.198 38.198 0.01704 0 0 0 0.8634 1 20015 20015 9.544 2.9136 1 + 27586 20759 18451 18806 32543 32543 0.1387261823024346 KLWIGVDKN 9 Unmodified _KLWIGVDKN_ 0 0 0 REV__ENSG00000161904|ENST00000293760|LEMD2 REV__ENSG00000161904|ENST00000293760|LEMD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2227783203125 3 358.209836 1071.60768 0.11731 4.202E-05 0.19866 7.1161E-05 0.31597 0.00011318 358.2095591989192 37.191 0.40962 37.191 37.018 37.428 0 33 20 2 0 0 0 0.21493 1 19805 19805 4.897 1.3005 1 1220600 + 27587 21609 18452 18807 32544 32544 0.07474022231281197 KLWKENPGL 9 Unmodified _KLWKENPGL_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8118286132812 2 542.811116 1083.60768 0.77333 0.00041977 0.53518 0.0002905 1.3085 0.00071028 542.8112049688141 39.139 0.25875 34.688 34.582 34.84 -4.4509 26 16 2 0 0 0 0.036857 1 23207 23207 51.63 9.5352 1 9557400 27588 1517 18453 18808 32545 32545 0.06922022231265146 KLWRRDLI 8 Unmodified _KLWRRDLI_ 0 0 0 ENSG00000237388|ENST00000446524|OR4A47 ENSG00000237388|ENST00000446524|OR4A47 ENSG00000237388|ENST00000446524|OR4A47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.2293701171875 3 367.229342 1098.6662 -0.53791 -0.00019754 -0.24808 -9.11E-05 -0.78598 -0.00028864 367.2294011377028 41.212 0.28004 41.212 41.024 41.304 0 21 13 3 0 0 0 0.78031 1 22212 22212 10.074 3.3508 1 2068500 27589 10653 18454 18809 32546 32546 0.12081123596408361 KLWTSLVNL 9 Unmodified _KLWTSLVNL_ 0 0 0 ENST00000504224.5_3_4:2498845-2502421:+|nuORF;ENST00000513643.5_1_4:2492220-2502421:+|nuORF ENST00000504224.5_3_4:2498845-2502421:+|nuORF ENST00000504224.5_3_4:2498845-2502421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3215942382812 2 537.321317 1072.62808 0.12566 6.752E-05 0.73122 0.0003929 0.85688 0.00046042 537.3219134271827 76.98 0.32523 77.03 76.848 77.173 0.05011 21 13 2 0 0 0 0.039985 1 42494 42494 49.933 17.147 1 2867200 27590 14489 18455 18810 32547 32547 0.09467192891088416 KLWTSLVNL 9 Unmodified _KLWTSLVNL_ 0 0 0 ENST00000504224.5_3_4:2498845-2502421:+|nuORF;ENST00000513643.5_1_4:2492220-2502421:+|nuORF ENST00000504224.5_3_4:2498845-2502421:+|nuORF ENST00000504224.5_3_4:2498845-2502421:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3218994140625 2 537.321317 1072.62808 1.2044 0.00064713 -1.3363 -0.000718 -0.13188 -7.0864E-05 537.32054683592 98.056 0.10693 91.88 91.817 91.924 -6.1757 15 6 3 0 0 0 0.0094097 1 64989 64989 82.529 38.671 1 34077000 27591 14489 18455 18810 32548 32548 0.09467192891088416 KLWWLSRMWLR 11 Unmodified _KLWWLSRMWLR_ 0 0 0 ENST00000216218.7_1_22:41222585-41223167:-|nuORF ENST00000216218.7_1_22:41222585-41223167:-|nuORF ENST00000216218.7_1_22:41222585-41223167:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.4752197265625 4 394.474875 1573.87039 0.93387 0.00036839 -0.35578 -0.00014035 0.57809 0.00022804 394.4748591477469 18.434 0.35763 15.812 15.672 16.03 -2.6215 71 34 3 0 0 0 0.74096 1 9691 9691 0.40827 0.041592 1 2555400 27592 11007 18456 18811 32549 32549 0.1064131969542359 KLYDGFQYL 9 Unmodified _KLYDGFQYL_ 0 0 0 nc|ENSG00000143393|Q9UBF8-2|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB;ENSG00000143393|ENST00000368873|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7962646484375 2 573.795132 1145.57571 0.47988 0.00027535 2.855 0.0016382 3.3349 0.0019135 573.795380419641 65.132 0.34306 64.648 64.448 64.791 -0.48428 42 15 4 0 0 0 0.07087 1 35527 35527 39.95 14.55 1 3102500 27593 16244 18457 18812 32550 32550 0.008746097574885425 KLYDIDVAKV 10 Unmodified _KLYDIDVAKV_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3381958007812 2 582.337164 1162.65977 0.55946 0.00032579 0.075252 4.3822E-05 0.63471 0.00036962 582.3373458019265 47.502 0.21643 47.502 47.384 47.601 0 24 9 3 0 0 0 0.15603 1 25994 25994 50.13 33.017 1 5815800 27594 10067 18458 18813 32551 32551 0.08495140854347483 KLYDIDVAKV 10 Unmodified _KLYDIDVAKV_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5608825683594 3 388.560535 1162.65977 0.43078 0.00016739 0.29772 0.00011568 0.72851 0.00028307 388.5606968247078 47.516 0.23899 47.516 47.384 47.623 0 27 10 3 0 0 0 0.1989 1 26023 26023 33.821 23.022 1 3462400 27595 10067 18458 18813 32552 32552 0.08495140854347483 KLYDIDVAKV 10 Unmodified _KLYDIDVAKV_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5611267089844 3 388.560535 1162.65977 1.0913 0.00042402 -0.13127 -5.1004E-05 0.95999 0.00037301 388.5604371174024 53.376 0.25818 47.572 47.453 47.711 -5.8042 23 16 2 0 0 0 0.10078 1 33755 33755 46.475 27.754 1 12613000 27596 10067 18458 18813 32553 32553 0.08495140854347483 KLYDIDVAKV 10 Unmodified _KLYDIDVAKV_ 0 0 0 ENST00000498752.1_1_11:43740306-43740693:+|nuORF;ENSG00000198242|ENST00000422514|RPL23A;ENST00000482216.1_1_5:120911545-120911773:-|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF ENST00000498752.1_1_11:43740306-43740693:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 388.560535 1162.65977 0.61863 0.00024037 0.66602 0.00025879 1.2847 0.00049916 388.5607687060261 47.74 0.081055 47.388 47.328 47.409 -0.3526 -0.10425 0.00057857 NaN 46.475 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2560800 27597 10067 18458 18813 0.08495140854347483 KLYEAVPQL 9 Unmodified _KLYEAVPQL_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3079833984375 2 530.8055 1059.59645 0.31487 0.00016714 0.96408 0.00051174 1.279 0.00067888 531.3074375507776 53.213 0.25914 52.762 52.663 52.922 -0.45173 22 12 2 0 0 0 0.032796 1 28801 28801 53.833 15.657 1 1895700 27598 1682 18459 18814 32554 32554 0.0690320013713972 KLYEAVPQL 9 Unmodified _KLYEAVPQL_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MSMS AL20221201_MKP_PDAC_01 4 530.8068237304688 2 530.8055 1059.59645 NaN NaN NaN NaN NaN NaN NaN 59.257 1 53.182 52.682 53.682 -6.0745 0 0 0 0.054801 1 38028 38028 55.503 13.663 1 27599 1682 18459 18814 32555 32555 0.0690320013713972 KLYEKLLTA 9 Unmodified _KLYEKLLTA_ 0 0 0 ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;ENSG00000108854|ENST00000262435|SMURF2;nc|ENSG00000198742|Q9HCE7|SMURF1 ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENST00000582081.5_1_17:62541968-62590137:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8302001953125 2 539.828975 1077.6434 0.064229 3.4673E-05 0.49721 0.00026841 0.56144 0.00030308 539.8295623914624 40.014 0.19596 39.717 39.629 39.824 -0.29716 12 8 2 0 0 0 0.094905 1 21149 21149 43.772 5.5968 1 1657500 27600 2615 18460 18815 32556 32556 0.10768059688280118 KLYEKNEKEEL 11 Unmodified _KLYEKNEKEEL_ 0 0 0 REV__nc|ENSG00000137492|O43422-2|THAP12 REV__nc|ENSG00000137492|O43422-2|THAP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.4429931640625 4 356.442329 1421.74021 1.6917 0.00060301 0.14959 5.3321E-05 1.8413 0.00065633 356.4423961847131 19.477 0.33791 16.82 16.649 16.987 -2.6564 84 31 3 0 0 0 0.71728 1 10243 10243 2.6312 0 1 23738000 + 27601 20243 18461 18816 32557 32557 0.0462095738678272 KLYEQHHVV 9 Unmodified _KLYEQHHVV_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8768615722656 3 384.876857 1151.60874 1.2529 0.00048222 -0.009062 -3.4878E-06 1.2439 0.00047873 384.8768985263366 18.816 0.58271 16.195 16.051 16.634 -2.6215 90 40 3 0 0 0 0.07087 1 9881 9881 37.075 31.672 1 20358000 27602 3196 18462 18817 32558 32558 0.03900236600156859 KLYERCEVV 9 Carbamidomethyl (C) _KLYERC(Carbamidomethyl (C))EVV_ KLYERC(1)EVV KLYERC(53)EVV 0 1 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-2|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MSMS AL20221201_MKP_PDAC_01 4 598.3106689453125 2 598.310623 1194.60669 NaN NaN NaN NaN NaN NaN NaN 28.763 1 25.615 25.115 26.115 -3.1482 0 0 0 0.061161 1 16075 16075 53.404 21.367 1 27603 901 18463 18818 32559 32559 80 0.017174398000406654 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5657653808594 3 358.565843 1072.6757 0.090715 3.2527E-05 0.17423 6.2472E-05 0.26494 9.4999E-05 358.56591170261527 23.702 0.17896 23.723 23.606 23.785 0.021185 13 7 2 0 0 0 0.044011 1 12204 12204 37.075 22.117 1 2289500 27604 5498 18464 18819 32560 32560 0.14226891881935444 KLYGKPIRV 9 Unmodified _KLYGKPIRV_ 0 0 0 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5659790039062 3 358.565843 1072.6757 1.2207 0.00043772 -0.044922 -1.6107E-05 1.1758 0.00042161 358.5657260755895 26.835 0.36023 23.799 23.589 23.949 -3.0365 48 18 3 0 0 0 0.044011 2 14762 14762;14882 43.982 29.025 1 40195000 27605 5498 18464 18819 32561;32562 32561 0.14226891881935444 KLYNPENIYL 10 Unmodified _KLYNPENIYL_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8392944335938 2 633.840071 1265.66559 -0.044011 -2.7896E-05 0.12879 8.1635E-05 0.084784 5.374E-05 633.8400472537008 59.766 0.22098 59.276 59.151 59.372 -0.49079 21 10 3 0 0 0 0.29752 1 32499 32499 27.629 8.3718 1 3135300 27606 625;13067;15673 18465 18820 32563 32563 0.04338239366052221 KLYPLTSGPI 10 Unmodified _KLYPLTSGPI_ 0 0 0 ENSG00000204711|ENST00000377197|CFAP95 ENSG00000204711|ENST00000377197|CFAP95 ENSG00000204711|ENST00000377197|CFAP95 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7332763671875 2 544.82115 1087.62775 0.8721 0.00047514 1.1492 0.00062611 2.0213 0.0011012 544.8213760861755 91.464 1.362 85.288 84.444 85.806 -6.1757 219 78 4 0 0 0 0.54684 1 60602 60602 13.906 1.3745 1 32010000 27607 10322 18466 18821 32564 32564 0.08743773171227076 KLYQHEINL 9 Unmodified _KLYQHEINL_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7845458984375 2 579.319306 1156.62406 0.40415 0.00023413 -1.3039 -0.00075536 -0.89973 -0.00052123 579.8192830660033 36.065 0.15526 36.065 35.975 36.131 0 12 7 2 0 0 0 0.10271 1 19112 19112 39.95 15.929 1 1918900 27608 3164 18467 18822 32565 32565 0.05201103397394036 KLYQRDLEV 9 Unmodified _KLYQRDLEV_ 0 0 0 nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3255615234375 2 582.324588 1162.63462 1.34 0.0007803 -0.34857 -0.00020298 0.9914 0.00057732 582.3244496538222 35.825 0.27504 31.633 31.527 31.802 -4.1928 33 17 2 0 0 0 0.022653 1 20843 20843 74.2 26.605 1 13515000 27609 2772 18468 18823 32566 32566 0.05981086051792772 KLYQRDLEV 9 Unmodified _KLYQRDLEV_ 0 0 0 nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.324588 1162.63462 -0.12165 -7.0841E-05 0.52034 0.00030301 0.39869 0.00023217 582.3246725102533 31.716 0.19884 31.716 31.6 31.799 0 0.041549 0.00081116 NaN 74.2 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1817500 27610 2772 18468 18823 0.05981086051792772 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2133178710938 3 360.213358 1077.61824 -0.4964 -0.00017881 0.83926 0.00030231 0.34285 0.0001235 360.21363928998784 33.257 0.17934 33.257 33.166 33.345 0 17 8 3 0 0 0 0.49766 1 17443 17443 5.0475 1.7279 1 1694900 27611 621 18469 18824 32567 32567 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8170166015625 2 539.816399 1077.61824 -0.40051 -0.0002162 1.1147 0.00060171 0.71415 0.00038551 539.8169421709001 33.351 0.24636 33.192 33.098 33.345 -0.15918 21 9 3 0 0 0 0.062454 1 17407 17407 41.956 7.8531 1 2368900 27612 621 18469 18824 32568 32568 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2136840820312 3 360.213358 1077.61824 -0.27397 -9.8687E-05 0.80842 0.00029121 0.53446 0.00019252 360.2134719277316 33.38 0.17927 33.221 33.118 33.297 -0.15918 12 6 2 0 0 0 0.13231 1 17416 17416 22.775 11.28 1 789520 27613 621 18469 18824 32569 32569 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.817138671875 2 539.816399 1077.61824 NaN NaN NaN NaN NaN NaN NaN 33.206 1 33.235 32.735 33.735 0.028934 0 0 0 0.82283 1 17462 17462 4.897 0.95262 1 27614 621 18469 18824 32570 32570 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2136535644531 3 360.213358 1077.61824 1.8969 0.0006833 -0.66554 -0.00023974 1.2314 0.00044356 360.2130082104981 37.63 0.36576 33.261 33.034 33.4 -4.3689 38 21 2 0 0 0 0.036857 1 22058 22058 40.725 20.144 1 17574000 27615 621 18469 18824 32571 32571 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8167114257812 2 539.816399 1077.61824 1.0909 0.0005889 -0.67117 -0.00036231 0.41975 0.00022659 539.8159613446046 37.613 0.38467 33.244 33.034 33.419 -4.3689 35 22 2 0 0 0 0.0099157 1 22059 22059 80.676 26.843 1 21796000 27616 621 18469 18824 32572 32572 0.0825400488570267 KLYTGLREV 9 Unmodified _KLYTGLREV_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.816399 1077.61824 -0.0045303 -2.4455E-06 0.15695 8.4722E-05 0.15242 8.2277E-05 539.8168507166844 33.166 0.16457 33.195 33.066 33.231 0.028934 -0.026455 6.3286E-05 NaN 80.676 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 796770 27617 621 18469 18824 0.0825400488570267 KLYTTAHHL 9 Unmodified _KLYTTAHHL_ 0 0 0 nc|ENSG00000166478|P52747-2|ZNF143;nc|ENSG00000166478|P52747-3|ZNF143;ENSG00000166478|ENST00000396602|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 nc|ENSG00000166478|P52747-2|ZNF143 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8707580566406 3 361.869703 1082.58728 1.7398 0.00062958 -1.1583 -0.00041917 0.58144 0.00021041 361.86909381594523 19.753 0.19494 17.097 16.938 17.133 -2.6564 19 12 2 0 0 0 0.39863 1 10464 10464 8.1555 5.4203 1 2911300 27618 7495 18470 18825 32573 32573 0.04928851571457926 KMADEDALRKI 11 Oxidation (M) _KM(Oxidation (M))ADEDALRKI_ KM(1)ADEDALRKI KM(43)ADEDALRKI 0 0 1 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MSMS AL20221201_MKP_PDAC_01 4 435.9000244140625 3 435.899222 1304.67584 NaN NaN NaN NaN NaN NaN NaN 26.82 1 23.783 23.283 24.283 -3.0365 0 0 0 0.14835 1 14817 14817 42.862 33.098 1 27619 6408 18471 18826 32574 32574 1127 0.035684790289451485 KMAGMMIA 8 Unmodified _KMAGMMIA_ 0 0 0 ENSG00000181072|ENST00000680005|CHRM2 ENSG00000181072|ENST00000680005|CHRM2 ENSG00000181072|ENST00000680005|CHRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 853.4169921875 1 852.414013 851.406737 -0.029387 -2.505E-05 -0.011681 -9.9571E-06 -0.041068 -3.5007E-05 852.4142014532281 84.765 0.3142 84.265 84.076 84.39 -0.49961 22 13 2 0 0 0 0.80975 1 46435 46435 0.79363 0 1 1101800 27620 8948 18472 18827 32575 32575 -0.024910296728990033 KMAKAGLLF 9 Oxidation (M) _KM(Oxidation (M))AKAGLLF_ KM(1)AKAGLLF KM(56)AKAGLLF 0 0 1 ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7921447753906 2 497.791338 993.568123 0.032002 1.593E-05 -1.006 -0.00050077 -0.97398 -0.00048484 497.7910529455519 41.411 0.27039 41.41 41.221 41.491 -0.0017929 31 12 3 0 0 0 0.028475 1 22088 22088 56.177 20.05 1 7723600 27621 6463 18473 18828 32576 32576 1134 0.07108178956207212 KMCLHAARY 9 Unmodified _KMCLHAARY_ 0 0 0 ENSG00000100908|ENST00000216799|EMC9;ENST00000558200.1_1_14:24608904-24610543:-|nuORF ENSG00000100908|ENST00000216799|EMC9 ENSG00000100908|ENST00000216799|EMC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7111206054688 2 546.775696 1091.53684 NaN NaN NaN NaN NaN NaN NaN 40.74 1 40.74 40.24 41.24 0 0 0 0 0.6306 1 21918 21918 11.64 0 1 27622 1889 18474 18829 32577 32577 -0.005267173495440147 KMDEVLYSI 9 Oxidation (M) _KM(Oxidation (M))DEVLYSI_ KM(1)DEVLYSI KM(52)DEVLYSI 0 0 1 ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.279541015625 2 557.278457 1112.54236 0.72875 0.00040612 -0.45696 -0.00025465 0.27179 0.00015147 557.2783133244416 50.816 0.35004 50.816 50.664 51.014 0 54 20 3 0 0 0 0.036857 1 27975 27975 51.63 9.7902 1 33606000 27623 5375 18475 18830 32578 32578 990 -0.009407600767644908 KMDEVLYSI 9 Oxidation (M) _KM(Oxidation (M))DEVLYSI_ KM(1)DEVLYSI KM(53)DEVLYSI 0 0 1 ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A ENSG00000141759|ENST00000269601|TXNL4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2780151367188 2 557.278457 1112.54236 0.68806 0.00038344 -0.56651 -0.0003157 0.12155 6.774E-05 557.2780278392561 56.898 0.33546 50.921 50.703 51.038 -5.9769 33 19 2 0 0 0 0.033587 1 36301 36301 53.404 9.5457 1 20842000 27624 5375 18475 18830 32579 32579 990 -0.009407600767644908 KMDPQTYSW 9 Unmodified _KMDPQTYSW_ 0 0 0 nc|ENSG00000120341|Q96JE7-2|SEC16B;ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF nc|ENSG00000120341|Q96JE7-2|SEC16B nc|ENSG00000120341|Q96JE7-2|SEC16B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.2979125976562 2 578.260599 1154.50665 1.1073 0.00064029 0.61057 0.00035307 1.7178 0.00099336 578.2610745959721 48.424 0.15981 43.19 43.142 43.302 -5.2339 11 9 2 0 0 0 0.054978 1 30184 30184 45.7 25.246 1 8122300 27625 3513 18476 18831 32580 32580 -0.06442797533736666 KMEEPSFTF 9 Unmodified _KMEEPSFTF_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2565307617188 2 558.257525 1114.5005 0.73438 0.00040998 -2.6447 -0.0014764 -1.9104 -0.0010665 558.255613950681 71.785 0.24142 71.309 71.147 71.389 -0.47609 20 9 3 0 0 0 0.30562 1 39265 39265 16.942 8.349 1 749070 + 27626 19105 18477 18832 32581 32581 -0.05217315765275998 KMEEPSFTF 9 Unmodified _KMEEPSFTF_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.257525 1114.5005 0.73438 0.00040998 -2.6447 -0.0014764 -1.9104 -0.0010665 558.255613950681 71.785 0.24142 71.309 71.147 71.389 -0.47609 0 0 NaN 16.942 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 749070 + 27627 19105 18477 18832 -0.05217315765275998 KMFDLNGDGEV 11 Oxidation (M) _KM(Oxidation (M))FDLNGDGEV_ KM(1)FDLNGDGEV KM(91)FDLNGDGEV 0 0 1 nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1;nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1 nc|ENSG00000107745|Q9BPX6-2|MICU1 nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.779541015625 2 620.779353 1239.54415 0.27147 0.00016852 0.039583 2.4573E-05 0.31105 0.00019309 620.779507521889 40.019 0.41249 40.019 39.758 40.17 0 61 20 4 0 0 0 0.00028183 2 21504 21387;21504 91.085 61.244 1 9126800 27628 2514 18478 18833 32582;32583 32583 430 -0.06603751058787566 KMFFLIDKV 9 Oxidation (M) _KM(Oxidation (M))FFLIDKV_ KM(1)FFLIDKV KM(50)FFLIDKV 0 0 1 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.8267211914062 2 578.825378 1155.6362 1.1168 0.00064643 -0.86224 -0.00049909 0.25456 0.00014734 578.8251680135521 57.681 0.39605 57.615 57.339 57.735 -0.066036 42 19 3 0 0 0 0.040733 1 31409 31409 49.527 30.165 1 3237500 27629 6530 18479 18834 32584 32584 1143 0.0646100381618453 KMFFLIDKV 9 Unmodified _KMFFLIDKV_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MSMS AL20221201_MKP_PDAC_01 4 380.8883056640625 3 380.887706 1139.64129 NaN NaN NaN NaN NaN NaN NaN 95.425 1 89.249 88.749 89.749 -6.1757 0 0 0 0.12343 1 63206 63206 30.703 14.138 1 27630 6530 18479 18835 32585 32585 0.0770530767879336 KMFWIEATLL 10 Unmodified _KMFWIEATLL_ 0 0 0 ENSG00000115602|ENST00000233954|IL1RL1 ENSG00000115602|ENST00000233954|IL1RL1 ENSG00000115602|ENST00000233954|IL1RL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8975219726562 3 417.898382 1250.67332 -0.67631 -0.00028263 -0.31081 -0.00012989 -0.98712 -0.00041252 417.8985156098883 16.642 0.10659 16.642 16.581 16.688 0 32 24 2 0 0 0 0.70734 1 8137 8137 2.086 0 1 739280 27631 3144 18480 18836 32586 32586 0.05800675361979302 KMGIKSGFTF 10 Unmodified _KMGIKSGFTF_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;ENSG00000164796|ENST00000297405|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2991333007812 2 558.299527 1114.5845 NaN NaN NaN NaN NaN NaN NaN 102.43 1 102.38 101.88 102.88 -0.045853 0 0 0 0.99091 1 56895 56895 1.6526 0.85899 1 27632 7246 18481 18837 32587 32587 0.031792601223060046 KMGKCYWFCCF 11 Unmodified _KMGKCYWFCCF_ 0 0 0 REV__ENST00000555736.1_1_14:65714419-65769374:-|nuORF REV__ENST00000555736.1_1_14:65714419-65769374:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.2921142578125 2 708.292007 1414.56946 NaN NaN NaN NaN NaN NaN NaN 89.131 1 89.131 88.631 89.631 0 0 0 0 0.9435 1 49323 49323 0 0 1 + 27633 28774 18482 18838 32588 32588 -0.12124014333221567 KMGLIFEV 8 Unmodified _KMGLIFEV_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7646484375 2 468.764789 935.515025 1.174 0.00055031 -0.33612 -0.00015756 0.83785 0.00039275 468.764724494745 96.36 0.24763 90.185 90.041 90.289 -6.1757 37 14 3 0 0 0 0.44629 1 63808 63808 39.957 3.9131 1 107290000 27634 1440 18483 18839 32589 32589 0.0446880117353885 KMHARDFTV 9 Unmodified _KMHARDFTV_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.858642578125 3 368.858809 1103.5546 0.73451 0.00027093 -0.6922 -0.00025532 0.042313 1.5608E-05 368.8587203000333 24.9 0.41417 22.017 21.778 22.192 -2.8831 76 30 4 0 0 0 0.38785 2 13498 13498;13604 8.9762 0 1 36683000 27635 6822 18484 18840 32590;32591 32590 0.00696321176951642 KMHARDFTV 9 Unmodified _KMHARDFTV_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MSMS AL20221201_MKP_PDAC_01 4 552.7861328125 2 552.784576 1103.5546 NaN NaN NaN NaN NaN NaN NaN 24.908 1 22.025 21.525 22.525 -2.8831 0 0 0 0.21752 1 13592 13592 29.437 22.148 1 27636 6822 18484 18840 32592 32592 0.00696321176951642 KMHEEQELF 9 Unmodified _KMHEEQELF_ 0 0 0 nc|ENSG00000142609|Q9C0B2-3|CFAP74;ENST00000378592.1_1_1:1916823-1922395:-|nuORF;nc|ENSG00000142609|Q9C0B2-2|CFAP74;nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74 nc|ENSG00000142609|Q9C0B2-3|CFAP74 nc|ENSG00000142609|Q9C0B2-3|CFAP74 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5216979980469 3 397.521863 1189.54376 NaN NaN NaN NaN NaN NaN NaN 21.866 1 21.866 21.366 22.366 0 0 0 0 0.84564 1 11098 11098 1.0715 0.29493 1 27637 5430 18485 18841 32593 32593 -0.04343125987975327 KMHSFWYLF 9 Unmodified _KMHSFWYLF_ 0 0 0 REV__ENST00000523861.1_1_8:120584407-120592491:-|nuORF REV__ENST00000523861.1_1_8:120584407-120592491:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.809326171875 2 629.807519 1257.60049 1.094 0.00068904 1.6387 0.001032 2.7327 0.0017211 629.8087425493014 66.165 0.48985 66.175 66.051 66.54 0.0095596 42 24 2 0 0 0 0.32871 1 36310 36310 15.847 1.9411 1 5829100 + 27638 28322 18486 18842 32594 32594 -0.018010336408224248 KMIAVNRQVL 10 Unmodified _KMIAVNRQVL_ 0 0 0 REV__ENSG00000166796|ENST00000541669|LDHC REV__ENSG00000166796|ENST00000541669|LDHC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.237060546875 3 391.237509 1170.6907 NaN NaN NaN NaN NaN NaN NaN 69.419 1 69.449 68.949 69.949 0.030914 0 0 0 0.94046 1 38157 38157 6.1918 0 1 + 27639 22150 18487 18843 32595 32595 0.11218015687632032 KMKDSYFWI 9 Unmodified _KMKDSYFWI_ 0 0 0 nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 nc|ENSG00000153246|Q13018-2|PLA2R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5393371582031 3 406.538965 1216.59507 NaN NaN NaN NaN NaN NaN NaN 20.388 1 20.388 19.888 20.888 0 0 0 0 0.84564 1 10255 10255 1.0715 0.29493 1 27640 6252 18488 18844 32596 32596 -0.004567572232645034 KMKGYQTTTL 10 Unmodified _KMKGYQTTTL_ 0 0 0 REV__ENSG00000083635|ENST00000379161|NUFIP1 REV__ENSG00000083635|ENST00000379161|NUFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8769226074219 3 390.877758 1169.61144 0.01566 6.1212E-06 -0.60782 -0.00023758 -0.59216 -0.00023146 390.8773183382804 51.79 0.48671 51.731 51.474 51.961 -0.058914 76 23 4 0 0 0 0.71123 1 27958 27958 0.69767 0 1 8520400 + 27641 17722 18489 18845 32597 32597 0.03342323942820258 KMKHHLVG 8 Unmodified _KMKHHLVG_ 0 0 0 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2738037109375 2 475.273647 948.532741 NaN NaN NaN NaN NaN NaN NaN 106.13 1 106.08 105.58 106.58 -0.048103 0 0 0 0.97444 1 58832 58832 0.69038 0 1 27642 7841 18490 18846 32598 32598 0.056415612190676256 KMKKKLSLL 9 Unmodified _KMKKKLSLL_ 0 0 0 REV__ENSG00000151687|ENST00000684021|ANKAR REV__ENSG00000151687|ENST00000684021|ANKAR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8657836914062 2 544.864837 1087.71512 NaN NaN NaN NaN NaN NaN NaN 13.276 1 13.276 12.776 13.776 0 0 0 0 0.8622 1 6283 6283 0 0 1 + 27643 21081 18491 18847 32599 32599 0.17477275841179107 KMKLKRKRA 9 Unmodified _KMKLKRKRA_ 0 0 0 ENSG00000183318|ENST00000689094|SPDYE4 ENSG00000183318|ENST00000689094|SPDYE4 ENSG00000183318|ENST00000689094|SPDYE4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8844604492188 2 579.884427 1157.7543 NaN NaN NaN NaN NaN NaN NaN 19.959 1 19.967 19.467 20.467 0.0078487 0 0 0 0.8622 1 10167 10167 0 0 1 27644 9136 18492 18848 32600 32600 0.1817342091540013 KMKMQKKEL 9 Unmodified _KMKMQKKEL_ 0 0 0 REV__ENSG00000108588|ENST00000225726|CCDC47 REV__ENSG00000108588|ENST00000225726|CCDC47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8905639648438 3 388.559483 1162.65662 0.68966 0.00026797 -1.5855 -0.00061607 -0.89587 -0.0003481 388.5606281692615 52.628 0.33984 52.57 52.368 52.708 -0.058914 37 16 3 0 0 0 0.37578 1 28533 28533 13.615 0.74226 1 5407600 + 27645 18618 18493 18849 32601 32601 0.08179851204386068 KMLAISLVHGG 11 Unmodified _KMLAISLVHGG_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3250122070312 2 563.326076 1124.6376 1.7578 0.00099019 0.49929 0.00028127 2.2571 0.0012715 563.3255403861829 105.16 0.1299 98.986 98.906 99.036 -6.1757 60 26 3 0 0 0 0.72311 1 70401 70401 4.5289 2.8762 1 91628000 27646 1607 18494 18850 32602 32602 0.08026637904981726 KMLDEILLQL 10 Oxidation (M) _KM(Oxidation (M))LDEILLQL_ KM(1)LDEILLQL KM(81)LDEILLQL 0 0 1 ENSG00000106628|ENST00000610533|POLD2;ENST00000511220.1_1_5:92603510-92603882:+|nuORF ENSG00000106628|ENST00000610533|POLD2 ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3525390625 2 616.351957 1230.68936 0.30127 0.00018569 0.3024 0.00018638 0.60367 0.00037207 616.3521633275761 98.69 0.18769 92.514 92.414 92.602 -6.1757 20 13 2 0 0 0 0.014503 1 65495 65495 80.676 6.4764 1 30622000 27647 2447 18495 18851 32603 32603 422 0.08324336808232147 KMLDEQDVPAA 11 Oxidation (M) _KM(Oxidation (M))LDEQDVPAA_ KM(1)LDEQDVPAA KM(55)LDEQDVPAA 0 0 1 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7954711914062 2 616.795003 1231.57545 0.88007 0.00054282 0.088254 5.4435E-05 0.96832 0.00059726 616.7950097212641 32.42 0.31396 28.564 28.401 28.715 -3.8562 28 17 2 0 0 0 0.029988 1 18471 18471 55.235 26.74 1 9984600 27648 5192 18496 18852 32604 32604 954 -0.03107178024674795 KMLDNFYNF 9 Oxidation (M) _KM(Oxidation (M))LDNFYNF_ KM(1)LDNFYNF KM(50)LDNFYNF 0 0 1 ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI ENST00000528004.5_1_11:86037714-86055806:+|nuORF ENST00000528004.5_1_11:86037714-86055806:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2763061523438 2 604.276249 1206.53795 -0.059123 -3.5726E-05 -0.16797 -0.0001015 -0.22709 -0.00013722 604.2761034264008 56.889 0.41366 56.403 56.17 56.583 -0.48554 63 19 5 0 0 0 0.040683 2 30933 30836;30933 49.554 23.286 1 14387000 27649 5990 18497 18853 32605;32606 32606 1072 -0.05706224499658674 KMLDNFYNF 9 Oxidation (M) _KM(Oxidation (M))LDNFYNF_ KM(1)LDNFYNF KM(48)LDNFYNF 0 0 1 ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI ENST00000528004.5_1_11:86037714-86055806:+|nuORF ENST00000528004.5_1_11:86037714-86055806:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.2762451171875 2 604.276249 1206.53795 0.098989 5.9817E-05 -2.688 -0.0016243 -2.589 -0.0015645 604.2738604500857 56.582 0.31798 56.513 56.32 56.638 -0.068741 24 15 2 0 0 0 0.044011 1 30806 30806 47.749 18.667 1 4339800 27650 5990 18497 18853 32607 32607 1072 -0.05706224499658674 KMLDNFYNF 9 Oxidation (M) _KM(Oxidation (M))LDNFYNF_ KM(1)LDNFYNF KM(66)LDNFYNF 0 0 1 ENST00000528004.5_1_11:86037714-86055806:+|nuORF;ENST00000531485.5_1_11:86013462-86056677:+|nuORF;ENST00000530208.1_1_11:86014499-86055761:+|nuORF;ENSG00000149196|ENST00000278483|HIKESHI ENST00000528004.5_1_11:86037714-86055806:+|nuORF ENST00000528004.5_1_11:86037714-86055806:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.27685546875 2 604.276249 1206.53795 1.0607 0.00064095 -0.042898 -2.5922E-05 1.0178 0.00061503 604.2762736275744 62.462 0.68115 56.286 56.038 56.719 -6.1757 65 35 3 0 0 0 0.017075 2 40328 40190;40328 66.457 26.507 1 32470000 27651 5990 18497 18853 32608;32609 32609 1072 -0.05706224499658674 KMLEKLPEL 9 Oxidation (M) _KM(Oxidation (M))LEKLPEL_ KM(1)LEKLPEL KM(42)LEKLPEL 0 0 1 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.820556640625 2 558.820292 1115.62603 0.12302 6.8744E-05 -0.82225 -0.00045949 -0.69924 -0.00039075 558.8198191107558 41.935 0.53431 41.935 41.645 42.179 0 74 27 4 0 0 0 0.062454 1 22571 22571 41.956 11.319 1 20470000 27652 6787 18498 18854 32610 32610 1176 0.07284396090949485 KMLEKLPEL 9 Oxidation (M) _KM(Oxidation (M))LEKLPEL_ KM(1)LEKLPEL KM(69)LEKLPEL 0 0 1 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8206176757812 2 558.820292 1115.62603 0.75515 0.00042199 -0.29039 -0.00016228 0.46476 0.00025972 558.8203186931975 46.039 0.55245 41.085 40.832 41.384 -4.9549 83 36 3 0 0 0 0.014182 1 28554 28554 69.338 17.708 1 32907000 27653 6787 18498 18854 32611 32611 1176 0.07284396090949485 KMLEKLPEL 9 Unmodified _KMLEKLPEL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8235473632812 2 550.822835 1099.63112 1.0851 0.00059769 -0.3973 -0.00021884 0.68779 0.00037885 550.8223830324443 55.074 0.43668 49.153 48.956 49.393 -5.9211 56 27 3 0 0 0 0.024507 1 34995 34995 59.052 24.12 1 35059000 27654 6787 18498 18855 32612 32612 0.08528699953581054 KMLEKLPEL 9 Unmodified _KMLEKLPEL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MSMS AL20221201_MKP_PDAC_01 4 550.823974609375 2 550.822835 1099.63112 NaN NaN NaN NaN NaN NaN NaN 78.19 1 72.015 71.515 72.515 -6.1757 0 0 0 0.033505 1 51169 51169 64.927 17.332 1 27655 6787 18498 18855 32613 32613 0.08528699953581054 KMLEKLPEL 9 Unmodified _KMLEKLPEL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MSMS AL20221201_MKP_PDAC_01 4 367.4567260742188 3 367.550982 1099.63112 NaN NaN NaN NaN NaN NaN NaN 78.364 1 72.188 71.688 72.688 -6.1757 0 0 0 0.27852 1 51291 51291 19.626 3.8873 1 27656 6787 18498 18855 32614 32614 0.08528699953581054 KMLEKLPEL 9 Unmodified _KMLEKLPEL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MSMS AL20221201_MKP_PDAC_01 4 550.8236694335938 2 550.822835 1099.63112 NaN NaN NaN NaN NaN NaN NaN 78.691 1 72.516 72.016 73.016 -6.1757 0 0 0 0.083147 1 51525 51525 47.732 20.103 1 27657 6787 18498 18855 32615 32615 0.08528699953581054 KMLELDWWGL 10 Unmodified _KMLELDWWGL_ 0 0 0 ENST00000545932.5_1_12:108958067-108958157:+|nuORF ENST00000545932.5_1_12:108958067-108958157:+|nuORF ENST00000545932.5_1_12:108958067-108958157:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8887634277344 3 430.889886 1289.64783 NaN NaN NaN NaN NaN NaN NaN 45.975 1 45.975 45.475 46.475 0 0 0 0 0.94046 1 25103 25103 6.1918 3.7571 1 27658 15101 18499 18856 32616 32616 0.014592008395311495 KMLETKWSL 9 Oxidation (M) _KM(Oxidation (M))LETKWSL_ KM(1)LETKWSL KM(51)LETKWSL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5423278808594 3 384.542487 1150.60563 -0.28012 -0.00010772 -0.15956 -6.1358E-05 -0.43969 -0.00016908 384.5424735508351 41.787 0.32677 41.48 41.355 41.682 -0.30682 39 15 3 0 0 0 0.037118 2 22145 22145;22254 51.488 31.073 1 13837000 + 27659 165;150 18500 18857 32617;32618 32617 12 0.03635225431139588 KMLETKWSL 9 Oxidation (M) _KM(Oxidation (M))LETKWSL_ KM(1)LETKWSL KM(77)LETKWSL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3104858398438 2 576.310092 1150.60563 -0.18663 -0.00010756 0.32159 0.00018533 0.13496 7.7776E-05 576.3104273434466 41.74 0.30768 41.433 41.375 41.682 -0.30682 27 14 3 0 0 0 0.011211 1 22156 22156 77.049 44.263 1 6853800 + 27660 165;150 18500 18857 32619 32619 12 0.03635225431139588 KMLETKWSL 9 Oxidation (M) _KM(Oxidation (M))LETKWSL_ KM(1)LETKWSL KM(50)LETKWSL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3082885742188 2 576.310092 1150.60563 -0.01662 -9.5783E-06 -1.3412 -0.00077293 -1.3578 -0.00078251 576.3089390460575 41.45 0.3202 41.448 41.381 41.701 -0.0017929 27 14 2 0 0 0 0.040733 1 22177 22177 49.527 24.536 1 5279500 + 27661 165;150 18500 18857 32620 32620 12 0.03635225431139588 KMLETKWSL 9 Oxidation (M) _KM(Oxidation (M))LETKWSL_ KM(1)LETKWSL KM(61)LETKWSL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3113403320312 2 576.310092 1150.60563 0.75306 0.00043399 -4.3977 -0.0025344 -3.6446 -0.0021004 576.3075187579097 45.623 0.40403 40.668 40.49 40.894 -4.9549 56 26 3 0 0 0 0.022461 1 28148 28148 61.09 17.108 1 29968000 + 27662 165;150 18500 18857 32621 32621 12 0.03635225431139588 KMLETKWSL 9 Oxidation (M) _KM(Oxidation (M))LETKWSL_ KM(1)LETKWSL KM(73)LETKWSL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3101196289062 2 576.310092 1150.60563 0.81796 0.0004714 -2.4193 -0.0013943 -1.6013 -0.00092287 576.3081785744579 45.778 0.30578 40.823 40.729 41.035 -4.9549 32 19 2 0 0 0 0.012586 1 28294 28294 73.196 34.582 1 27164000 + 27663 165;150 18500 18857 32622 32622 12 0.03635225431139588 KMLETKWSL 9 Unmodified _KMLETKWSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2110290527344 3 379.210849 1134.61072 1.712 0.0006492 -2.2486 -0.00085268 -0.53658 -0.00020348 379.2094762963775 54.004 0.65952 48.139 47.883 48.542 -5.8653 79 39 4 0 0 0 0.047788 2 34225 34079;34225 35.612 15.198 1 41421000 + 27664 165;150 18500 18858 32623;32624 32624 0.048795292937711565 KMLETKWSL 9 Unmodified _KMLETKWSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.31298828125 2 568.312635 1134.61072 1.371 0.00077917 -0.46254 -0.00026287 0.90848 0.0005163 568.3124055447964 53.975 0.46724 48.11 47.872 48.339 -5.8653 60 27 3 0 0 0 0.033747 2 34130 34130;34266 53.317 20.531 1 52926000 + 27665 165;150 18500 18858 32625;32626 32625 0.048795292937711565 KMLEVELEM 9 Unmodified _KMLEVELEM_ 0 0 0 REV__ENSG00000124103|ENST00000371328|FAM209A REV__ENSG00000124103|ENST00000371328|FAM209A MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2850952148438 2 561.282686 1120.55082 0.81423 0.00045701 1.019 0.00057194 1.8332 0.001029 561.2836145031328 56.901 0.6708 50.924 50.561 51.232 -5.9769 110 34 5 0 0 0 0.078314 2 36408 36277;36408 38.176 9.094 1 371890000 + 27666 19413 18501 18859 32627;32628 32628 -0.004635294317495209 KMLILIKLFF 10 Unmodified _KMLILIKLFF_ 0 0 0 REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF REV__ENST00000565598.2_1_16:53404185-53404910:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.2847290039062 2 633.406338 1264.79812 NaN NaN NaN NaN NaN NaN NaN 83.722 1 83.224 82.724 83.724 -0.49751 0 0 0 1.0019 1 45825 45825 0.45834 0 1 + 27667 28911 18502 18860 32629 32629 0.17631592569136956 KMLKLEKIA 9 Unmodified _KMLKLEKIA_ 0 0 0 REV__nc|ENSG00000085982|Q9NVE5|USP40 REV__nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5640563964844 3 358.563222 1072.66784 1.5816 0.00056709 0.21451 7.6916E-05 1.7961 0.000644 358.5633490774732 84.021 0.50114 77.846 77.567 78.068 -6.1757 50 26 2 0 0 0 0.19127 1 55203 55203 22.658 6.509 1 15122000 + 27668 17759 18503 18861 32630 32630 0.13440996570147945 KMLMDKIL 8 Unmodified _KMLMDKIL_ 0 0 0 ENST00000512992.1_1_5:176562171-176562345:+|nuORF ENST00000512992.1_1_5:176562171-176562345:+|nuORF ENST00000512992.1_1_5:176562171-176562345:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.286376953125 2 496.287574 990.560595 0.64002 0.00031764 -1.7351 -0.00086111 -1.0951 -0.00054348 496.2865445478961 99.607 0.17036 93.431 93.354 93.525 -6.1757 23 10 3 0 0 0 0.67481 1 66384 66384 19.439 3.5918 1 63919000 27669 14629 18504 18862 32631 32631 0.06493703364276371 KMLNHLYFYIM 11 Unmodified _KMLNHLYFYIM_ 0 0 0 ENSG00000165078|ENST00000297770|CPA6;nc|ENSG00000165078|Q8N4T0-2|CPA6;ENST00000518549.1_2_8:68395895-68658364:-|nuORF ENSG00000165078|ENST00000297770|CPA6 ENSG00000165078|ENST00000297770|CPA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 736.5369873046875 2 736.875076 1471.7356 NaN NaN NaN NaN NaN NaN NaN 80.723 1 80.231 79.731 80.731 -0.49247 0 0 0 0.94301 1 44204 44204 0.35063 0.043601 1 27670 7287 18505 18863 32632 32632 0.01860078438653545 KMLPTQFLF 9 Unmodified _KMLPTQFLF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF;GPRC5A|p.L81Wfs*72|1|0.08|ENSG00000013588|chr12:12908485-12908486|-/TGGC|frameshift_variant ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8123168945312 2 562.81227 1123.60999 0.40944 0.00023044 0.35729 0.00020109 0.76673 0.00043153 562.8120944976638 99.009 0.11584 92.834 92.793 92.908 -6.1757 8 6 2 0 0 0 0.017075 1 65834 65834 66.457 20.436 1 32499000 27671 481 18506 18864 32633 32633 0.053127346447354284 KMLPTTTCLEI 11 Unmodified _KMLPTTTCLEI_ 0 0 0 REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2198486328125 3 417.222537 1248.64578 NaN NaN NaN NaN NaN NaN NaN 18.979 1 18.985 18.485 19.485 0.0060463 0 0 0 0.94184 1 9639 9639 0.40827 0 1 + 27672 21188 18507 18865 32634 32634 0.031404040394136246 KMLSHQQL 8 Unmodified _KMLSHQQL_ 0 0 0 REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4 REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7718505859375 2 492.768394 983.522236 -0.21497 -0.00010593 -1.8927 -0.00093267 -2.1077 -0.0010386 492.7679153783385 71.107 0.82241 71.107 70.895 71.717 0 62 38 2 0 0 0 0.61462 1 39542 39542 24.674 5.2349 1 1535300 + 27673 29799 18508 18866 32635 32635 0.029815337739705683 KMMDVTVTI 9 2 Oxidation (M) _KM(Oxidation (M))M(Oxidation (M))DVTVTI_ KM(1)M(1)DVTVTI KM(58)M(58)DVTVTI 0 0 2 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2681884765625 2 535.267035 1068.51952 0.48 0.00025693 -0.16218 -8.6808E-05 0.31782 0.00017012 535.2670787700417 44.271 0.59246 39.419 39.084 39.676 -4.852 74 41 2 0 0 0 0.025842 1 26930 26930 57.722 17.765 1 80344000 27674 2113 18509 18867 32636 32636 365;366 -0.012001024658275128 KMMDVTVTI 9 Unmodified _KMMDVTVTI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.272705078125 2 519.272121 1036.52969 1.3358 0.00069367 -0.98408 -0.00051101 0.35176 0.00018266 519.2721317867241 63.89 0.62141 57.715 57.375 57.996 -6.1757 78 33 3 0 0 0 0.036857 1 41259 41259 51.63 0.77478 1 113720000 27675 2113 18509 18868 32637 32637 0.012885052593901491 KMMEEVEKL 9 Unmodified _KMMEEVEKL_ 0 0 0 ENST00000475065.5_1_7:102953018-102963086:-|nuORF;ENSG00000105821|ENST00000379263|DNAJC2 ENST00000475065.5_1_7:102953018-102963086:-|nuORF ENST00000475065.5_1_7:102953018-102963086:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5281066894531 3 379.527849 1135.56172 1.3081 0.00049647 -0.25399 -9.6396E-05 1.0541 0.00040008 379.52769288607453 39.53 0.17648 35.079 34.98 35.156 -4.4509 13 10 2 0 0 0 0.35911 1 23488 23488 10.315 6.7226 1 5890800 27676 2368 18510 18869 32638 32638 -0.0006412705747607106 KMMKWQLLL 9 Unmodified _KMMKWQLLL_ 0 0 0 REV__ENST00000446041.6_1_3:140692730-140692763:+|nuORF REV__ENST00000446041.6_1_3:140692730-140692763:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.8416137695312 2 595.843048 1189.67154 NaN NaN NaN NaN NaN NaN NaN 64.082 1 63.597 63.097 64.097 -0.48512 0 0 0 0.7453 1 34961 34961 7.9102 1.187 1 + 27677 27136 18511 18870 32639 32639 0.08429343072361917 KMNHGTPTLR 10 Unmodified _KMNHGTPTLR_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5419006347656 3 385.54148 1153.60261 1.5975 0.00061592 -1.0366 -0.00039967 0.5609 0.00021625 385.541185303381 21.352 0.43316 18.617 18.411 18.844 -2.7348 101 37 4 0 0 0 0.65282 1 11462 11462 7.4771 0 1 31125000 + 27678 23975 18512 18871 32640 32640 0.03195395097009168 KMNHLEVESF 10 Unmodified _KMNHLEVESF_ 0 0 0 REV__ENSG00000173402|ENST00000308775|DAG1 REV__ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.299560546875 2 617.300255 1232.58596 0.80132 0.00049465 -2.3123 -0.0014274 -1.511 -0.00093276 617.2988423724759 57.3 0.45522 51.273 51.079 51.535 -6.0275 34 24 2 0 0 0 0.033218 1 36613 36613 66.457 28.281 1 31026000 + 27679 22726 18513 18872 32641 32641 -0.02103150579614521 KMPAKSPP 8 Unmodified _KMPAKSPP_ 0 0 0 REV__nc|ENSG00000172534|P51610-2|HCFC1 REV__nc|ENSG00000172534|P51610-2|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2409973144531 2 428.241481 854.468409 NaN NaN NaN NaN NaN NaN NaN 73.625 1 73.149 72.649 73.649 -0.47588 0 0 0 0.97444 1 40291 40291 2.5775 0 1 + 27680 22658 18514 18873 32642 32642 0.03535361342255783 KMPAKSPP 8 Unmodified _KMPAKSPP_ 0 0 0 REV__nc|ENSG00000172534|P51610-2|HCFC1 REV__nc|ENSG00000172534|P51610-2|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2415771484375 2 428.241481 854.468409 NaN NaN NaN NaN NaN NaN NaN 73.893 1 73.417 72.917 73.917 -0.47588 0 0 0 0.97444 1 40442 40442 2.5775 0 1 + 27681 22658 18514 18873 32643 32643 0.03535361342255783 KMPAKSPP 8 Unmodified _KMPAKSPP_ 0 0 0 REV__nc|ENSG00000172534|P51610-2|HCFC1 REV__nc|ENSG00000172534|P51610-2|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2409362792969 2 428.241481 854.468409 NaN NaN NaN NaN NaN NaN NaN 73.864 1 73.908 73.408 74.408 0.043983 0 0 0 0.97444 1 40711 40711 2.5775 0 1 + 27682 22658 18514 18873 32644 32644 0.03535361342255783 KMPKFKMPSF 10 Oxidation (M) _KM(Oxidation (M))PKFKMPSF_ KM(1)PKFKMPSF KM(40)PKFKM(-40)PSF 0 0 1 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5563659667969 3 419.55585 1255.64572 1.0877 0.00045637 -0.60844 -0.00025527 0.4793 0.00020109 419.555734376296 82.952 0.91953 76.777 76.25 77.17 -6.1757 165 51 4 0 0 0 0.036372 2 54410 54274;54410 64.927 39.97 2 51504000 27683 9384 18515 18874 32645;32646 32646 1545;1546 0.02812448830059111 KMPKFKMPSF 10 Unmodified _KMPKFKMPSF_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.224853515625 3 414.224212 1239.65081 1.1689 0.00048417 -0.37049 -0.00015347 0.79837 0.0003307 414.2242639074568 90.473 0.44807 84.298 84.041 84.489 -6.1757 96 26 5 0 0 0 0.086206 2 59766 59637;59766 49.742 32.693 1 236260000 27684 9384 18515 18875 32647;32648 32648 0.040567526926906794 KMPKFKMPSF 10 Unmodified _KMPKFKMPSF_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8341064453125 2 620.83268 1239.65081 0.7241 0.00044954 -0.24895 -0.00015456 0.47514 0.00029499 620.8324719239574 90.463 0.33436 84.287 84.11 84.444 -6.1757 44 19 3 0 0 0 0.012868 2 59814 59684;59814 84.522 59.531 1 21106000 27685 9384 18515 18875 32649;32650 32650 0.040567526926906794 KMPKFKMPSF 10 2 Oxidation (M) _KM(Oxidation (M))PKFKM(Oxidation (M))PSF_ KM(1)PKFKM(1)PSF KM(43)PKFKM(43)PSF 0 0 2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MSMS AL20221201_MKP_PDAC_01 4 425.2228393554688 3 424.887489 1271.64064 NaN NaN NaN NaN NaN NaN NaN 31.003 1 27.507 27.007 28.007 -3.497 0 0 0 0.20306 1 17530 17530 42.835 28.617 1 27686 9384 18515 18876 32651 32651 1545;1546 0.015681449674730175 KMPKFSMPGF 10 Unmodified _KMPKFSMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2958374023438 2 585.29593 1168.57731 1.0632 0.00062226 -1.7845 -0.0010445 -0.72134 -0.0004222 585.7957722361975 89.771 0.51801 83.596 83.308 83.826 -6.1757 59 28 3 0 0 0 0.093652 1 59252 59252 63.961 42.424 1 25259000 27687 3826 18516 18877 32652 32652 -0.00023795749757482554 KMPKMKMPTF 10 2 Oxidation (M) _KM(Oxidation (M))PKMKM(Oxidation (M))PTF_ KM(0.982)PKM(0.021)KM(0.998)PTF KM(17)PKM(-17)KM(27)PTF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2164916992188 3 424.216729 1269.62836 0.10869 4.6107E-05 -0.41683 -0.00017683 -0.30815 -0.00013072 424.21683238888585 25.741 0.35999 22.79 22.609 22.969 -2.9511 50 22 3 0 0 0 0.078417 1 14110 14110 51.488 34.439 3 16077000 27688 3826 18517 18878 32653 32653 675;676;677 0.00432785232783317 KMPKMKMPTF 10 Oxidation (M) _KMPKM(Oxidation (M))KMPTF_ KM(0.001)PKM(0.767)KM(0.233)PTF KM(-32)PKM(5.2)KM(-5.2)PTF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8853759765625 3 418.885091 1253.63344 0.93035 0.00038971 -1.6296 -0.00068262 -0.69925 -0.00029291 418.8847512597042 33.126 0.57533 29.27 28.904 29.48 -3.8562 91 35 4 0 0 0 0.11322 1 19014 19014 44.392 18.395 3 68725000 27689 3826 18517 18879 32654 32654 675;676;677 0.01677089095392148 KMPKMKMPTF 10 Oxidation (M) _KM(Oxidation (M))PKMKMPTF_ KM(0.999)PKM(0.001)KMPTF KM(31)PKM(-31)KM(-39)PTF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8858947753906 3 418.885091 1253.63344 1.1632 0.00048725 -1.0037 -0.00042045 0.15946 6.6795E-05 418.88493548085427 39.284 0.76007 34.833 34.565 35.325 -4.4509 170 47 5 0 0 0 0.036372 1 23589 23589 64.927 50.089 3 60059000 27690 3826 18517 18879 32655 32655 675;676;677 0.01677089095392148 KMPKMKMPTF 10 Unmodified _KMPKMKMPTF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.553955078125 3 413.553452 1237.63853 1.0424 0.00043109 0.27744 0.00011474 1.3198 0.00054583 413.553516527718 48.705 0.43604 43.309 43.054 43.49 -5.3961 45 25 2 0 0 0 0.052718 2 30349 30349;30453 57.204 25.568 1 31258000 27691 3826 18517 18880 32656;32657 32656 0.02921392958000979 KMPKMKMPTF 10 Unmodified _KMPKMKMPTF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5552978515625 3 413.553452 1237.63853 0.31505 0.00013029 -0.36389 -0.00015049 -0.048836 -2.0196E-05 413.55376163472636 84.974 0.75409 78.798 78.414 79.168 -6.1757 163 45 5 0 0 0 0.020109 3 55745 55745;55878;56012 66.55 19.854 1 176370000 27692 3826 18517 18880 32658;32659;32660 32658 0.02921392958000979 KMPKMKMPTF 10 Unmodified _KMPKMKMPTF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3270263671875 2 619.82654 1237.63853 -0.10762 -6.6706E-05 0.022168 1.3741E-05 -0.085451 -5.2965E-05 619.8270789280851 85.004 0.35659 78.828 78.6 78.957 -6.1757 30 20 2 0 0 0 0.0022709 3 55834 55834;55859;56005 107.1 67.15 1 17762000 27693 3826 18517 18880 32661;32662;32663 32661 0.02921392958000979 KMPKVKMPKF 10 Unmodified _KMPKVKMPKF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.9122924804688 3 411.911857 1232.71374 1.0333 0.00042563 1.357 0.00055896 2.3903 0.00098459 411.911980231066 85.877 0.52776 79.701 79.361 79.889 -6.1757 40 29 2 0 0 0 0.093652 2 56493 56493;56624 48.073 36.578 1 13912000 27694 3826 18518 18881 32664;32665 32664 0.1066931848074546 KMPLSTHRF 9 Oxidation (M) _KM(Oxidation (M))PLSTHRF_ KM(1)PLSTHRF KM(69)PLSTHRF 0 0 1 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2028198242188 3 378.202576 1131.5859 1.2986 0.00049115 -0.24104 -9.116E-05 1.0576 0.00039998 378.20262045377194 18.799 0.37382 16.177 15.99 16.364 -2.6215 72 27 3 0 0 0 0.014182 1 9956 9956 69.338 52.772 1 23824000 27695 4961 18519 18882 32666 32666 907 0.02536894211038998 KMPLSTHRF 9 Unmodified _KMPLSTHRF_ 0 0 0 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8709106445312 3 372.870938 1115.59098 1.0691 0.00039865 -0.47464 -0.00017698 0.5945 0.00022167 372.87077455420194 27 0.42433 23.963 23.774 24.199 -3.0365 52 21 3 0 0 0 0.011968 2 14869 14869;14987 67.838 52.1 1 37314000 27696 4961 18519 18883 32667;32668 32667 0.037811980736705664 KMRKFYFRRIM 11 Unmodified _KMRKFYFRRIM_ 0 0 0 ENSG00000073734|ENST00000650372|ABCB11 ENSG00000073734|ENST00000650372|ABCB11 ENSG00000073734|ENST00000650372|ABCB11 MSMS AL20221201_MKP_PDAC_01 4 525.6301879882812 3 525.963614 1574.86901 NaN NaN NaN NaN NaN NaN NaN 18.52 1 15.898 15.398 16.398 -2.6215 0 0 0 0.9428 1 9760 9760 0.50596 0 1 27697 1112 18520 18884 32669 32669 0.10457362335000653 KMRKKILAT 9 Unmodified _KMRKKILAT_ 0 0 0 ENST00000359353.9_1_17:61851672-61869869:+|nuORF;ENST00000578137.5_1_17:61864524-61869872:+|nuORF ENST00000359353.9_1_17:61851672-61869869:+|nuORF ENST00000359353.9_1_17:61851672-61869869:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8525390625 2 544.852261 1087.68997 NaN NaN NaN NaN NaN NaN NaN 107.23 1 101.06 100.56 101.56 -6.1757 0 0 0 0.84737 1 71736 71736 1.8442 1.0506 1 27698 12143 18521 18885 32670 32670 0.1496322103860166 KMRRMRRRRRW 11 Unmodified _KMRRMRRRRRW_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 844.4974365234375 2 844.49407 1686.97359 NaN NaN NaN NaN NaN NaN NaN 105.2 1 99.026 98.526 99.526 -6.1757 0 0 0 0.9435 1 70475 70475 0 0 1 27699 11416 18522 18886 32671 32671 0.15757921654926577 KMRRMRRRRRW 11 Unmodified _KMRRMRRRRRW_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 844.4990234375 2 844.49407 1686.97359 NaN NaN NaN NaN NaN NaN NaN 106.76 1 100.59 100.09 101.09 -6.1757 0 0 0 0.9435 1 71449 71449 0 0 1 27700 11416 18522 18886 32672 32672 0.15757921654926577 KMRRMRRRRRW 11 Unmodified _KMRRMRRRRRW_ 0 0 0 ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 844.4976196289062 2 844.49407 1686.97359 NaN NaN NaN NaN NaN NaN NaN 106.94 1 100.77 100.27 101.27 -6.1757 0 0 0 0.9435 1 71560 71560 0 0 1 27701 11416 18522 18886 32673 32673 0.15757921654926577 KMRVFLAA 8 Unmodified _KMRVFLAA_ 0 0 0 nc|ENSG00000177238|Q6ZMU5-2|TRIM72;ENSG00000177238|ENST00000322122|TRIM72 nc|ENSG00000177238|Q6ZMU5-2|TRIM72 nc|ENSG00000177238|Q6ZMU5-2|TRIM72 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 467.7766723632812 2 468.278398 934.542243 0.4967 0.00023259 -1.4172 -0.00066363 -0.92048 -0.00043104 468.27757973459745 44.895 0.39877 40.043 39.834 40.233 -4.852 39 27 2 0 0 0 8.7369 1 27390 27390 13.508 7.1538 1 11432000 27702 8669 18523 18887 32674 32674 0.07235329504590027 KMSPSERLIL 10 Unmodified _KMSPSERLIL_ 0 0 0 REV__ENSG00000145781|ENST00000274458|COMMD10 REV__ENSG00000145781|ENST00000274458|COMMD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3335571289062 2 587.336641 1172.65873 -0.10284 -6.0399E-05 -3.1507 -0.0018506 -3.2536 -0.0019109 587.3350042113066 55.743 0.23284 55.675 55.569 55.801 -0.068737 23 11 3 0 0 0 0.022967 1 30283 30283 72.968 29.11 1 14535000 + 27703 20794 18524 18888 32675 32675 0.07930603213844734 KMSWSPQLAKR 11 Unmodified _KMSWSPQLAKR_ 0 0 0 ENST00000402966.1_1_22:42093436-42094048:+|nuORF ENST00000402966.1_1_22:42093436-42094048:+|nuORF ENST00000402966.1_1_22:42093436-42094048:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.5811462402344 3 444.579935 1330.71798 1.4036 0.00062403 0.18712 8.319E-05 1.5908 0.00070722 444.5800093846756 97.164 0.44754 90.988 90.708 91.155 -6.1757 72 25 4 0 0 0 0.5942 1 64431 64431 11.631 2.6551 1 79928000 27704 12900 18525 18889 32676 32676 0.06584499227983542 KMVGICSS 8 Unmodified _KMVGICSS_ 0 0 0 REV__ENST00000563532.1_1_16:34787605-34787734:+|nuORF REV__ENST00000563532.1_1_16:34787605-34787734:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 825.4098510742188 1 824.400472 823.393195 0.89636 0.00073896 4.3035 0.0035478 5.1999 0.0042868 824.403407182511 101.62 0.068352 95.444 95.414 95.483 -6.1757 6 3 2 0 0 0 0.78849 1 68209 68209 9.3474 0.75416 1 4602900 + 27705 28876 18526 18890 32677 32677 -0.02556564180474652 KMVQMTDLYL 10 Unmodified _KMVQMTDLYL_ 0 0 0 REV__ENSG00000148841|ENST00000337478|ITPRIP REV__ENSG00000148841|ENST00000337478|ITPRIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 414.2113647460938 3 414.547132 1240.61957 0.36133 0.00014979 -1.9692 -0.00081632 -1.6079 -0.00066654 414.5467340266588 23.219 0.027554 20.44 20.421 20.448 -2.7784 6 5 2 0 0 0 0.23922 1 12544 12544 3.8763 1.1411 1 4548600 + 27706 20973 18527 18891 32678 32678 0.008881348679778966 KMVSIQITL 9 Oxidation (M) _KM(Oxidation (M))VSIQITL_ KM(1)VSIQITL KM(86)VSIQITL 0 0 1 ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.80712890625 2 524.807185 1047.59982 0.26186 0.00013743 -0.52039 -0.0002731 -0.25853 -0.00013568 524.8072150995941 60.301 0.27574 60.258 60.095 60.371 -0.043507 30 14 3 0 0 0 0.0090524 1 32853 32853 85.642 24.284 1 11313000 27707 4456 18528 18892 32679 32679 813 0.07792126919503062 KMVSIQITL 9 Unmodified _KMVSIQITL_ 0 0 0 ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8114013671875 2 516.809728 1031.6049 1.2086 0.00062464 -0.39725 -0.0002053 0.81139 0.00041934 516.8096489741384 86.713 0.59301 80.538 80.213 80.806 -6.1757 54 31 2 0 0 0 0.023481 1 57129 57129 60.074 7.8056 1 9180900 27708 4456 18528 18893 32680 32680 0.0903643078213463 KMWEKAIKL 9 Oxidation (M) _KM(Oxidation (M))WEKAIKL_ KM(1)WEKAIKL KM(46)WEKAIKL 0 0 1 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2262573242188 3 388.22661 1161.658 -0.19378 -7.5231E-05 -0.2187 -8.4905E-05 -0.41248 -0.00016014 388.22654375457716 32.515 0.28319 32.545 32.389 32.672 0.029747 28 10 4 0 0 0 0.047714 1 17068 17068 45.74 19.472 1 8822100 27709 5855 18529 18894 32681 32681 1053 0.08363808564763531 KMYDSVLAL 9 Oxidation (M) _KM(Oxidation (M))YDSVLAL_ KM(1)YDSVLAL KM(54)YDSVLAL 0 0 1 ENSG00000181885|ENST00000360325|CLDN7;nc|ENSG00000181885|O95471-2|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 ENSG00000181885|ENST00000360325|CLDN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.276123046875 2 528.275718 1054.53688 0.48459 0.000256 -0.69662 -0.00036801 -0.21203 -0.00011201 528.2754433529436 54.932 0.52898 54.932 54.689 55.218 0 73 22 4 0 0 0 0.032796 1 30585 30585 53.833 13.875 1 30862000 27710 9003 18530 18895 32682 32682 1508 0.011795611314255439 KMYGKIIRV 9 Unmodified _KMYGKIIRV_ 0 0 0 ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5606384277344 3 369.895083 1106.66342 0.8655 0.00032014 -1.1145 -0.00041224 -0.24899 -9.2099E-05 369.89463932736044 47.21 0.21933 47.177 47.105 47.324 -0.033421 13 10 2 0 0 0 0.19994 1 25420 25420 12.241 4.0851 1 1705800 27711 3317 18531 18896 32683 32683 0.11435532147243066 KNAAPVVHF 9 Unmodified _KNAAPVVHF_ 0 0 0 REV__nc|ENSG00000148498|Q8TEW0-9|PARD3 REV__nc|ENSG00000148498|Q8TEW0-9|PARD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.77783203125 2 491.777077 981.5396 0.26801 0.0001318 2.0949 0.0010302 2.3629 0.001162 491.777710784898 69.276 0.35396 69.276 69.046 69.4 0 26 15 2 0 0 0 0.39863 1 38584 38584 12.532 3.9383 1 2152100 + 27712 20956 18532 18897 32684 32684 0.04809197371275786 KNARGPPSL 9 Unmodified _KNARGPPSL_ 0 0 0 ENST00000498134.1_1_13:33528197-33528527:-|nuORF ENST00000498134.1_1_13:33528197-33528527:-|nuORF ENST00000498134.1_1_13:33528197-33528527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2716979980469 2 470.272158 938.529764 0.27359 0.00012866 0.46048 0.00021655 0.73407 0.00034521 470.2720811253766 80.588 0.31876 80.646 80.518 80.837 0.057587 17 12 3 0 0 0 0.58865 1 44578 44578 2.0598 1.2661 1 3786800 27713 14415 18533 18898 32685 32685 0.05804009365908769 KNASDPLELIF 11 Unmodified _KNASDPLELIF_ 0 0 0 REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF REV__ENST00000592404.5_1_19:28288763-28290260:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2289428710938 3 416.227444 1245.6605 NaN NaN NaN NaN NaN NaN NaN 49.207 1 49.163 48.663 49.663 -0.04369 0 0 0 0.93893 1 26579 26579 1.3296 0 1 + 27714 29175 18534 18899 32686 32686 0.047499355034233304 KNATAFHV 8 Unmodified _KNATAFHV_ 0 0 0 nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO nc|ENSG00000151490|Q16827-2|PTPRO nc|ENSG00000151490|Q16827-2|PTPRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2415161132812 2 444.240327 886.466101 0.88283 0.00039219 0.83843 0.00037246 1.7213 0.00076465 444.24131383450714 58.628 0.64653 58.567 58.254 58.901 -0.060722 55 32 2 0 0 0 0.80676 1 32095 32095 2.5775 1.7838 1 1922100 27715 6119 18535 18900 32687 32687 0.018326489288028824 KNCLKLHL 8 Unmodified _KNCLKLHL_ 0 0 0 ENST00000480832.5_1_3:114519980-114580633:-|nuORF ENST00000480832.5_1_3:114519980-114580633:-|nuORF ENST00000480832.5_1_3:114519980-114580633:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.2308044433594 2 484.78913 967.563706 1.417 0.00068694 -0.1944 -9.4241E-05 1.2226 0.0005927 484.7888298528697 41.627 0.34063 37.02 36.879 37.22 -4.6079 46 21 3 0 0 0 8.7369 1 25133 25133 5.7604 0 1 14623000 27716 14064 18536 18901 32688 32688 0.07862714533291637 KNCLLPPKDV 10 Unmodified _KNCLLPPKDV_ 0 0 0 REV__ENST00000210313.7_1_9:123578869-123579040:-|nuORF REV__ENST00000210313.7_1_9:123578869-123579040:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.214111328125 3 376.214482 1125.62162 -0.13968 -5.2551E-05 -1.4452 -0.00054372 -1.5849 -0.00059627 376.2136962802047 55.181 0.45237 55.181 54.83 55.283 0 35 19 2 0 0 0 0.69377 1 30638 30638 1.7423 0.52744 1 2603800 + 27717 24729 18537 18902 32689 32689 0.06382931668031233 KNCLVRAP 8 Unmodified _KNCLVRAP_ 0 0 0 REV__ENSG00000128294|ENST00000338754|TPST2 REV__ENSG00000128294|ENST00000338754|TPST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7569580078125 2 450.75783 899.501106 NaN NaN NaN NaN NaN NaN NaN 70.36 1 70.36 69.86 70.86 0 0 0 0 0.97444 1 39204 39204 2.3027 0.4585 1 + 27718 19606 18538 18903 32690 32690 0.047335684650988696 KNCRFLLVT 9 Unmodified _KNCRFLLVT_ 0 0 0 ENST00000369037.8_1_6:107655524-107780637:-|nuORF ENST00000369037.8_1_6:107655524-107780637:-|nuORF ENST00000369037.8_1_6:107655524-107780637:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2114562988281 3 365.211071 1092.61138 NaN NaN NaN NaN NaN NaN NaN 45.566 1 45.538 45.038 46.038 -0.028011 0 0 0 0.84737 1 24484 24484 0.96228 0 1 27719 12290 18539 18904 32691 32691 0.06878368733509888 KNCVNKDHL 9 Unmodified _KNCVNKDHL_ 0 0 0 nc|ENSG00000159692|Q13363|CTBP1;ENSG00000159692|ENST00000382952|CTBP1;ENST00000514596.1_1_4:1206030-1206831:-|nuORF nc|ENSG00000159692|Q13363|CTBP1 nc|ENSG00000159692|Q13363|CTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5190734863281 3 357.518564 1069.53386 0.23187 8.2897E-05 1.3299 0.00047546 1.5618 0.00055836 357.5189845121895 48.51 0.26822 48.467 48.341 48.609 -0.04369 42 13 4 0 0 0 0.46501 1 26143 26143 6.1918 1.8626 1 16658000 27720 6668 18540 18905 32692 32692 0.0018773079727907316 KNDARSEEDL 10 Unmodified _KNDARSEEDL_ 0 0 0 REV__ENSG00000104497|ENST00000345957|SNX16 REV__ENSG00000104497|ENST00000345957|SNX16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.1642150878906 3 392.854558 1175.54184 0.81174 0.00031889 0.083566 3.2829E-05 0.8953 0.00035172 393.18891775618187 36.282 0.39735 32.089 31.836 32.234 -4.1928 52 23 3 0 0 0 0.22811 1 21216 21216 3.3196 1.5774 1 20272000 + 27721 18360 18541 18906 32693 32693 -0.03890463472225747 KNDFHFDYLTP 11 Unmodified _KNDFHFDYLTP_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.9346008300781 3 466.222582 1395.64592 0.5828 0.00027172 0.4697 0.00021899 1.0525 0.0004907 466.2227243863119 72.897 0.31161 72.421 72.295 72.606 -0.47588 31 13 3 0 0 0 0.30526 1 39871 39871 1.1098 0.6038 1 1106400 + 27722 23951 18542 18907 32694 32694 -0.036081366447206165 KNDKFWKI 8 Unmodified _KNDKFWKI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2066955566406 3 360.206315 1077.59712 0.31063 0.00011189 0.40535 0.00014601 0.71598 0.0002579 360.2063895411722 40.168 0.26966 40.173 40.068 40.337 0.0050583 31 12 3 0 0 0 0.79669 1 21410 21410 6.2058 2.0163 1 4395800 + 27723 21279 18543 18908 32695 32695 0.06142039576843672 KNEERMMAFLF 11 Unmodified _KNEERMMAFLF_ 0 0 0 ENST00000394095.6_1_3:101090872-101090923:-|nuORF ENST00000394095.6_1_3:101090872-101090923:-|nuORF ENST00000394095.6_1_3:101090872-101090923:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.5654602050781 3 472.565186 1414.67373 0.48502 0.0002292 2.8504 0.001347 3.3355 0.0015762 472.9011238496978 74.738 0.13527 74.738 74.649 74.784 0 8 5 2 0 0 0 0.74203 1 41590 41590 0.08335 0 1 516810 27724 12726 18544 18909 32696 32696 -0.017022729804921255 KNEFAGRTTK 10 Unmodified _KNEFAGRTTK_ 0 0 0 REV__ENSG00000009413|ENST00000368802|REV3L REV__ENSG00000009413|ENST00000368802|REV3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.2206115722656 3 384.543767 1150.60947 -0.4164 -0.00016013 -0.3053 -0.0001174 -0.72171 -0.00027753 384.54345895509 21.427 0.1678 21.427 21.341 21.509 0 36 22 2 0 0 0 0.23412 1 10879 10879 5.4027 0 1 2815700 + 27725 17033 18545 18910 32697 32697 0.04019031249208638 KNEKVAVDL 9 Unmodified _KNEKVAVDL_ 0 0 0 REV__nc|ENSG00000156535|Q6YHK3-2|CD109 REV__nc|ENSG00000156535|Q6YHK3-2|CD109 MSMS AL20221201_MKP_PDAC_01 4 508.2926025390625 2 508.292756 1014.57096 NaN NaN NaN NaN NaN NaN NaN 47.359 1 42.278 41.778 42.778 -5.0805 0 0 0 0.41346 1 29386 29386 19.257 0 1 + 27726 21337 18546 18911 32698 32698 0.06425725614712974 KNEQTTTNTI 10 Unmodified _KNEQTTTNTI_ 0 0 0 REV__nc|ENSG00000165730|Q6ZVD7-2|STOX1 REV__nc|ENSG00000165730|Q6ZVD7-2|STOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2901000976562 2 575.290942 1148.56733 -0.04393 -2.5273E-05 -1.2819 -0.00073748 -1.3259 -0.00076275 575.2904152183844 22.127 0.10179 22.127 22.082 22.183 0 6 4 2 0 0 0 0.70734 1 11268 11268 0 0 1 204310 + 27727 22045 18547 18912 32699 32699 -0.0010098894981638296 KNERYFPFR 9 Unmodified _KNERYFPFR_ 0 0 0 REV__ENSG00000176692|ENST00000649859|FOXC2 REV__ENSG00000176692|ENST00000649859|FOXC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5844116210938 3 419.556007 1255.64619 0.71615 0.00030046 0.71268 0.00029901 1.4288 0.00059947 419.55621585669206 57.57 0.23714 57.504 57.438 57.675 -0.066036 15 11 2 0 0 0 0.21822 1 31348 31348 2.4985 0.59211 1 891890 + 27728 22940 18548 18913 32700 32700 0.028593278657808696 KNETYLNHF 9 Unmodified _KNETYLNHF_ 0 0 0 REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2 REV__nc|ENSG00000143028|Q5VXT5-2|SYPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.1925659179688 3 389.192734 1164.55637 0.0027562 1.0727E-06 0.18948 7.3745E-05 0.19224 7.4818E-05 389.1929540970464 34.577 0.16805 34.604 34.5 34.668 0.027401 10 7 2 0 0 0 0.54444 1 18250 18250 2.7352 0 1 1129700 + 27729 20599 18549 18914 32701 32701 -0.01932346533430973 KNFCREDSY 9 Unmodified _KNFCREDSY_ 0 0 0 ENST00000514352.5_1_4:91234111-91389506:+|nuORF ENST00000514352.5_1_4:91234111-91389506:+|nuORF ENST00000514352.5_1_4:91234111-91389506:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8372192382812 3 387.837962 1160.49206 0.1306 5.0651E-05 -1.3311 -0.00051623 -1.2005 -0.00046558 387.837320789854 69.259 0.31999 69.259 69.103 69.423 0 24 13 2 0 0 0 0.54444 1 38597 38597 2.7352 0 1 2271500 27730 14652 18550 18915 32702 32702 -0.0817686968189264 KNFIFKSDN 9 Unmodified _KNFIFKSDN_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5426635742188 3 371.529346 1111.56621 1.066 0.00039606 -0.25782 -9.5787E-05 0.80821 0.00030027 371.5289784175014 46.526 0.16016 46.493 46.369 46.529 -0.033421 12 7 2 0 0 0 0.21834 1 25040 25040 0.96228 0.3991 1 972690 + 27731 17096 18551 18916 32703 32703 0.01488841471973501 KNFIFKSDN 9 Unmodified _KNFIFKSDN_ 0 0 0 REV__ENSG00000018510|ENST00000264167|AGPS REV__ENSG00000018510|ENST00000264167|AGPS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.529346 1111.56621 0.6085 0.00022608 2.9057 0.0010795 3.5142 0.0013056 371.53041631273385 46.8 0.13637 46.463 46.367 46.503 -0.33664 -0.014726 0.0029878 NaN 0.96228 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1728300 + 27732 17096 18551 18916 0.01488841471973501 KNFLEQHRP 9 Unmodified _KNFLEQHRP_ 0 0 0 REV__nc|ENSG00000138769|Q92772|CDKL2 REV__nc|ENSG00000138769|Q92772|CDKL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.213134765625 3 390.21224 1167.61489 NaN NaN NaN NaN NaN NaN NaN 14.546 1 14.546 14.046 15.046 0 0 0 0 0.85798 1 6923 6923 0.23584 0 1 + 27733 20364 18552 18917 32704 32704 0.03778754831705555 KNFLEQHRP 9 Unmodified _KNFLEQHRP_ 0 0 0 REV__nc|ENSG00000138769|Q92772|CDKL2 REV__nc|ENSG00000138769|Q92772|CDKL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2130432128906 3 390.21224 1167.61489 NaN NaN NaN NaN NaN NaN NaN 13.746 1 13.753 13.253 14.253 0.0073986 0 0 0 0.85798 1 6784 6784 0.23584 0 1 + 27734 20364 18552 18917 32705 32705 0.03778754831705555 KNFLPHNFR 9 Unmodified _KNFLPHNFR_ 0 0 0 nc|ENSG00000104755|Q99965-2|ADAM2;ENSG00000104755|ENST00000265708|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5492858886719 3 391.548964 1171.62506 0.99098 0.00038802 0.0055233 2.1626E-06 0.9965 0.00039018 391.548978467122 46.481 0.63417 46.448 46.139 46.774 -0.033417 68 30 3 0 0 0 0.60485 1 25092 25092 1.0715 0 1 2248600 27735 2230 18553 18918 32706 32706 0.04611362556943277 KNFQLRRFHFF 11 Unmodified _KNFQLRRFHFF_ 0 0 0 REV__ENSG00000115548|ENST00000312912|KDM3A REV__ENSG00000115548|ENST00000312912|KDM3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2192993164062 4 385.713748 1538.82589 0.71673 0.00027645 -0.78104 -0.00030126 -0.064312 -2.4806E-05 385.96390054487335 57.515 0.19532 57.449 57.378 57.573 -0.066036 10 9 2 0 0 0 0.30584 1 31323 31323 0.45452 0.35968 1 1319400 + 27736 18991 18554 18919 32707 32707 0.07802631873573773 KNGGFAHK 8 Unmodified _KNGGFAHK_ 0 0 0 REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.7332153320312 2 429.732669 857.450785 0.22774 9.7866E-05 0.95622 0.00041092 1.184 0.00050878 429.73295257901077 59.845 0.29277 59.354 59.234 59.527 -0.49079 24 14 2 0 0 0 0.80722 1 32559 32559 2.3027 1.5091 1 1449700 + 27737 29117 18555 18920 32708 32708 0.01635782131609176 KNGIKIDMY 9 Unmodified _KNGIKIDMY_ 0 0 0 REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF REV__ENST00000495526.5_1_1:40207631-40211283:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.287353515625 2 541.289159 1080.56377 NaN NaN NaN NaN NaN NaN NaN 31.222 1 31.12 30.62 31.62 -0.10269 0 0 0 0.84892 1 16223 16223 1.6526 0.85899 1 + 27738 27949 18556 18921 32709 32709 0.026706697426334358 KNGVRQIA 8 Unmodified _KNGVRQIA_ 0 0 0 REV__ASPH|p.M535I|1|0.18|ENSG00000198363|chr8:61553052-61553052|C/T|missense_variant REV__ASPH|p.M535I|1|0.18|ENSG00000198363|chr8:61553052-61553052|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.267333984375 2 443.266876 884.519199 0.58706 0.00026022 -0.2688 -0.00011915 0.31825 0.00014107 443.2666515839974 73.599 0.85291 73.643 73.405 74.258 0.043983 81 38 3 0 0 0 0.80992 1 40487 40487 0.69038 0 1 7653900 + 27739 16732 18557 18922 32710 32710 0.0723202671144918 KNHEEEMKDL 10 Unmodified _KNHEEEMKDL_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2022094726562 3 424.86781 1271.5816 -0.56563 -0.00024032 0.68489 0.00029099 0.11927 5.0673E-05 424.8681431098286 17.851 0.11805 17.865 17.794 17.913 0.013865 42 19 3 0 0 0 0.70053 1 8888 8888 2.8433 1.9178 1 3695200 + 27740 169 18558 18923 32711 32711 -0.043326597931582 KNHEEEMKDLR 11 Unmodified _KNHEEEMKDLR_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.9017333984375 3 476.901514 1427.68271 -0.44361 -0.00021156 1.0686 0.00050962 0.62499 0.00029806 476.9020364680641 15.215 0.066473 15.201 15.164 15.231 -0.014066 37 18 3 0 0 0 0.73545 1 7445 7445 0.92553 0.78564 1 688860 + 27741 169 18559 18924 32712 32712 -0.01402208090462409 KNHLALHLFS 10 Unmodified _KNHLALHLFS_ 0 0 0 REV__ENSG00000104321|ENST00000262209|TRPA1 REV__ENSG00000104321|ENST00000262209|TRPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8950805664062 3 393.892619 1178.65603 NaN NaN NaN NaN NaN NaN NaN 21.364 1 21.377 20.877 21.877 0.013796 0 0 0 0.99248 1 10936 10936 0.62683 0 1 + 27742 18349 18560 18925 32713 32713 0.0738451587117197 KNIIREHFI 9 Unmodified _KNIIREHFI_ 0 0 0 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 ENSG00000163960|ENST00000296328|UBXN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5639953613281 3 390.564502 1168.67168 0.18371 7.1752E-05 1.0968 0.00042839 1.2806 0.00050014 390.5649801780908 59.505 0.2846 59.452 59.33 59.614 -0.053059 25 14 2 0 0 0 0.55775 1 32509 32509 4.5289 0.33936 1 5823300 27743 7108 18561 18926 32714 32714 0.09408802388225013 KNIKIKRAL 9 Unmodified _KNIKIKRAL_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.9174499511719 3 361.916876 1082.7288 0.9114 0.00032985 0.34625 0.00012531 1.2576 0.00045516 361.9169958418898 16.797 0.29843 14.24 14.1 14.398 -2.557 166 48 4 0 0 0 0.16226 1 8680 8680 19.362 0 1 85138000 + 27744 22811 18562 18927 32715 32715 0.19074269664588428 KNIKQFFLK 9 Unmodified _KNIKQFFLK_ 0 0 0 ENST00000264433.10_2_4:159828073-159828154:+|nuORF ENST00000264433.10_2_4:159828073-159828154:+|nuORF ENST00000264433.10_2_4:159828073-159828154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2416076660156 3 389.241248 1164.70191 0.52635 0.00020488 1.2061 0.00046947 1.7325 0.00067435 389.24169391449453 64.763 0.4834 64.763 64.677 65.16 1.5259E-05 43 23 2 0 0 0 0.61855 1 35486 35486 0.23584 0.23584 1 4761400 27745 11313 18563 18928 32716 32716 0.1261516105339524 KNKDDPLY 8 Unmodified _KNKDDPLY_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.253662109375 2 496.756007 991.497461 -0.58024 -0.00028824 -1.4478 -0.00071921 -2.028 -0.0010074 496.75577673915035 28.364 0.43163 28.364 28.189 28.621 0 53 23 3 0 0 0 0.76266 1 14725 14725 11.64 1.4569 1 12432000 + 27746 20948 18564 18929 32717 32717 0.0013717717223471482 KNKGKLTFHS 10 Unmodified _KNKGKLTFHS_ 0 0 0 REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF REV__ENST00000440835.6_1_12:71032156-71032375:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.22509765625 3 387.224257 1158.65094 NaN NaN NaN NaN NaN NaN NaN 41.905 1 41.897 41.397 42.397 -0.0088196 0 0 0 0.97302 1 22420 22420 1.7423 0.14999 1 + 27747 27081 18565 18930 32718 32718 0.0779621200854308 KNKKGKRKGP 10 Unmodified _KNKKGKRKGP_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8;ENST00000535734.5_1_12:15811000-15814989:-|nuORF ENSG00000151491|ENST00000281172|EPS8;ENST00000535734.5_1_12:15811000-15814989:-|nuORF ENSG00000151491|ENST00000281172|EPS8 MSMS AL20221201_MKP_PDAC_01 4 381.3705444335938 3 380.915646 1139.72511 NaN NaN NaN NaN NaN NaN NaN 97.66 1 91.484 90.984 91.984 -6.1757 0 0 0 0.99008 1 64716 64716 1.7423 0 1 27748 6120;14976 18566 18931 32719 32719 0.160835998907487 KNKLFIKL 8 Unmodified _KNKLFIKL_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 502.3349609375 2 502.33677 1002.65899 NaN NaN NaN NaN NaN NaN NaN 24.371 1 21.544 21.044 22.044 -2.8273 0 0 0 0.63034 1 13266 13266 32.117 1.8922 1 27749 8887 18567 18932 32720 32720 0.15776390995984002 KNKQLSLPPR 10 Unmodified _KNKQLSLPPR_ 0 0 0 REV__AluJb_dup56968|chr8:98045693-98046014:+|1.299814409217567|0.0002169198745066|12.55|179.0|6|2|sense REV__AluJb_dup56968|chr8:98045693-98046014:+|1.299814409217567|0.0002169198745066|12.55|179.0|6|2|sense MSMS AL20221201_MKP_PDAC_01 4 394.2437438964844 3 394.24354 1179.70879 NaN NaN NaN NaN NaN NaN NaN 109.42 1 103.24 102.74 103.74 -6.1757 0 0 0 1.0009 1 73076 73076 0.56317 0.32733 1 + 27750 16707 18568 18933 32721 32721 0.12612473933995716 KNKSDELDDKV 11 Unmodified _KNKSDELDDKV_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883972167969 3 430.88938 1289.64631 0.40275 0.00017354 -0.77971 -0.00033597 -0.37695 -0.00016243 430.8880958315952 59.673 0.49767 59.62 59.479 59.977 -0.053062 40 24 3 0 0 0 0.69708 1 32514 32514 2.084 0 1 8266800 + 27751 19593 18569 18934 32722 32722 0.01307238284448431 KNKWSILY 8 Unmodified _KNKWSILY_ 0 0 0 nc|ENSG00000126216|Q96CW5-3|TUBGCP3;nc|ENSG00000126216|Q96CW5-2|TUBGCP3;ENSG00000126216|ENST00000261965|TUBGCP3 nc|ENSG00000126216|Q96CW5-3|TUBGCP3 nc|ENSG00000126216|Q96CW5-3|TUBGCP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3013305664062 2 526.300384 1050.58622 1.1381 0.00059899 -0.78691 -0.00041415 0.3512 0.00018483 526.3001117294042 88.963 1.478 82.787 81.956 83.434 -6.1757 277 82 5 0 0 0 0.42686 2 58740 58362;58740 42.095 0 1 70972000 27752 3931 18570 18935 32723;32724 32724 0.06294637202586273 KNLCENGFQL 10 Unmodified _KNLCENGFQL_ 0 0 0 REV__ENSG00000176108|ENST00000325167|CHMP6 REV__ENSG00000176108|ENST00000325167|CHMP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2874145507812 2 583.287148 1164.55974 -0.21316 -0.00012433 0.44179 0.00025769 0.22863 0.00013336 583.2874872776536 22.239 0.48584 22.261 22.006 22.492 0.022896 29 21 2 0 0 0 0.71042 1 11411 11411 0.35063 0 1 925020 + 27753 22911 18571 18936 32725 32725 -0.01595419751083682 KNLCIEIYLK 10 Unmodified _KNLCIEIYLK_ 0 0 0 ENST00000376170.8_2_10:27036944-27037043:-|nuORF ENST00000376170.8_2_10:27036944-27037043:-|nuORF ENST00000376170.8_2_10:27036944-27037043:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7670288085938 3 412.905537 1235.69478 -0.028967 -1.1961E-05 3.8487 0.0015892 3.8198 0.0015772 412.90709363678695 32.1 0.203 31.971 31.866 32.069 -0.12915 9 7 2 0 0 0 0.24008 1 16677 16677 0.62683 0.063655 1 753620 27754 12488 18572 18937 32726 32726 0.08636060390654166 KNLCIEIYLK 10 Unmodified _KNLCIEIYLK_ 0 0 0 ENST00000376170.8_2_10:27036944-27037043:-|nuORF ENST00000376170.8_2_10:27036944-27037043:-|nuORF ENST00000376170.8_2_10:27036944-27037043:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 412.905537 1235.69478 -0.37578 -0.00015516 3.8334 0.0015828 3.4576 0.0014277 412.90718240617537 31.991 0.22619 32.021 31.925 32.151 0.030106 0.025166 -4.5672E-06 NaN 0.62683 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1309400 27755 12488 18572 18937 0.08636060390654166 KNLFAYLFP 9 Unmodified _KNLFAYLFP_ 0 0 0 REV__nc|ENSG00000164270|Q13639-8|HTR4 REV__nc|ENSG00000164270|Q13639-8|HTR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5424194335938 3 371.542816 1111.60662 0.38998 0.0001449 -1.0929 -0.00040607 -0.70296 -0.00026118 371.5422357916336 48.091 0.56603 48.053 47.7 48.266 -0.038643 98 27 5 0 0 0 0.58865 1 25934 25934 1.0715 0.61312 1 35384000 + 27756 29748 18573 18938 32727 32727 0.05527807862335976 KNLFTLHES 9 Unmodified _KNLFTLHES_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5336303710938 3 363.529346 1087.56621 1.8417 0.0006695 0.21743 7.9041E-05 2.0591 0.00074854 363.5292714506976 41.958 0.64874 37.274 36.86 37.508 -4.6846 141 40 5 0 0 0 0.55775 1 25117 25117 2.2828 1.0894 1 103700000 27757 9935 18574 18939 32728 32728 0.025928414719373905 KNLHNARTF 9 Unmodified _KNLHNARTF_ 0 0 0 REV__nc|ENSG00000198959|P21980-2|TGM2 REV__nc|ENSG00000198959|P21980-2|TGM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.30322265625 2 550.801614 1099.58868 1.1331 0.00062412 1.7704 0.00097516 2.9035 0.0015993 550.8032107361075 86.276 0.45595 80.1 79.81 80.266 -6.1757 32 24 2 0 0 0 0.15672 1 56964 56964 20.454 10.38 1 13436000 + 27758 24108 18575 18940 32729 32729 0.04286485660213657 KNLILYLLT 9 Unmodified _KNLILYLLT_ 0 0 0 nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3 nc|ENSG00000152520|Q58A45-2|PAN3 nc|ENSG00000152520|Q58A45-2|PAN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2326354980469 3 364.23387 1089.67978 NaN NaN NaN NaN NaN NaN NaN 40.123 1 40.128 39.628 40.628 0.0050545 0 0 0 0.85447 1 21389 21389 0.96228 0.56156 1 27759 6194 18576 18941 32730 32730 0.13852936584976305 KNLLKHPML 9 Unmodified _KNLLKHPML_ 0 0 0 ENST00000469575.1_1_10:121259766-121285594:-|nuORF ENST00000469575.1_1_10:121259766-121285594:-|nuORF ENST00000469575.1_1_10:121259766-121285594:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7197570800781 3 365.2232 1092.64777 0.02777 1.0142E-05 -1.0748 -0.00039255 -1.0471 -0.00038241 365.222481682992 28.915 0.50147 28.945 28.798 29.299 0.030104 41 20 3 0 0 0 0.21819 1 15203 15203 1.0715 0.10919 1 20412000 27760 13838 18577 18942 32731 32731 0.10515245630199388 KNLLSEHEQL 10 Unmodified _KNLLSEHEQL_ 0 0 0 ENSG00000173905|ENST00000470487|GOLIM4 ENSG00000173905|ENST00000470487|GOLIM4 ENSG00000173905|ENST00000470487|GOLIM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2528991699219 3 404.21906 1209.63535 NaN NaN NaN NaN NaN NaN NaN 39.505 1 39.517 39.017 40.017 0.011452 0 0 0 0.99388 1 21044 21044 0.56317 0 1 27761 8375 18578 18943 32732 32732 0.0389188070084856 KNLQLHFP 8 Unmodified _KNLQLHFP_ 0 0 0 REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7863159179688 2 498.784902 995.55525 1.8036 0.0008996 1.1779 0.0005875 2.9814 0.0014871 498.7853589040578 81.666 0.44563 81.726 81.507 81.952 0.059929 51 17 4 0 0 0 0.80232 1 45144 45144 5.2307 0.90143 1 11217000 + 27762 25834 18579 18944 32733 32733 0.05729483888319464 KNLRWKQRFQG 11 Unmodified _KNLRWKQRFQG_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 730.9151000976562 2 730.915301 1459.81605 0.44351 0.00032417 -0.39144 -0.00028611 0.052076 3.8063E-05 730.9152514847574 53.034 0.21642 52.971 52.845 53.061 -0.063423 24 10 3 0 0 0 0.68427 1 28741 28741 5.7319 0.43497 1 2396000 + 27763 17660 18580 18945 32734 32734 0.10453443868186696 KNLRWKQRFQG 11 Unmodified _KNLRWKQRFQG_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 730.915301 1459.81605 0.23478 0.0001716 -0.40883 -0.00029882 -0.17405 -0.00012721 731.4163922497597 53.372 0.18097 52.921 52.803 52.984 -0.45173 -0.025051 -1.8793E-05 NaN 5.7319 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 819220 + 27764 17660 18580 18945 0.10453443868186696 KNLRWKQRFQG 11 Unmodified _KNLRWKQRFQG_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 730.915301 1459.81605 0.44351 0.00032417 -0.39144 -0.00028611 0.052076 3.8063E-05 730.9152514847574 53.034 0.21642 52.971 52.845 53.061 -0.063423 0.025051 6.6313E-06 NaN 5.7319 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2396000 + 27765 17660 18580 18945 0.10453443868186696 KNLSDMENEF 10 Unmodified _KNLSDMENEF_ 0 0 0 ENSG00000140519|ENST00000268122|RHCG ENSG00000140519|ENST00000268122|RHCG ENSG00000140519|ENST00000268122|RHCG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.517578125 3 409.516777 1225.5285 NaN NaN NaN NaN NaN NaN NaN 85.009 1 84.508 84.008 85.008 -0.5015 0 0 0 0.97302 1 46515 46515 1.7423 0.52744 1 27766 5246 18581 18946 32735 32735 -0.07524037575853981 KNLSELARM 9 Unmodified _KNLSELARM_ 0 0 0 REV__ENSG00000183914|ENST00000572933|DNAH2 REV__ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5312805175781 3 354.530581 1060.56991 1.0481 0.00037157 -0.54782 -0.00019422 0.50025 0.00017735 354.5303772555974 39.827 0.29283 35.298 35.078 35.371 -4.5294 37 18 3 0 0 0 0.59532 1 23667 23667 0.86438 0 1 22678000 + 27767 23387 18582 18947 32736 32736 0.04205187974139335 KNLSELARM 9 Unmodified _KNLSELARM_ 0 0 0 REV__ENSG00000183914|ENST00000572933|DNAH2 REV__ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5309753417969 3 354.530581 1060.56991 1.5418 0.00054662 -1.1888 -0.00042147 0.35302 0.00012515 354.53027118143933 40.648 0.43384 36.118 35.889 36.323 -4.5294 74 26 4 0 0 0 0.59532 1 24260 24260 0.86438 0 1 34411000 + 27768 23387 18582 18947 32737 32737 0.04205187974139335 KNLSSIKFGY 10 Unmodified _KNLSSIKFGY_ 0 0 0 REV__ENST00000553966.5_1_14:59814299-59830444:+|nuORF REV__ENST00000553966.5_1_14:59814299-59830444:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2176513671875 3 386.21688 1155.62881 NaN NaN NaN NaN NaN NaN NaN 50.217 1 50.168 49.668 50.668 -0.048824 0 0 0 0.97044 1 27152 27152 3.8763 1.3778 1 + 27769 18084 18583 18948 32738 32738 0.057219875401415266 KNNFIPQPI 9 Unmodified _KNNFIPQPI_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.53857421875 3 357.537953 1069.59203 -0.11152 -3.9873E-05 2.2784 0.00081463 2.1669 0.00077476 357.53871573480797 41.306 0.22144 41.304 41.18 41.402 -0.0017929 27 10 3 0 0 0 0.43463 1 22077 22077 7.1017 1.3699 1 3850500 27770 2211 18584 18949 32739 32739 0.06001735714221468 KNNKKKGTM 9 Unmodified _KNNKKKGTM_ 0 0 0 REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L REV__nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.205322265625 3 350.202576 1047.5859 NaN NaN NaN NaN NaN NaN NaN 49.448 1 49.4 48.9 49.9 -0.048824 0 0 0 0.82739 1 26716 26716 2.4985 0 1 + 27771 23795 18585 18950 32740 32740 0.06400894211060404 KNNTITGD 8 Unmodified _KNNTITGD_ 0 0 0 ENST00000394205.7_2_4:141302364-141302442:+|nuORF ENST00000394205.7_2_4:141302364-141302442:+|nuORF ENST00000394205.7_2_4:141302364-141302442:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 431.7165222167969 2 431.716882 861.41921 NaN NaN NaN NaN NaN NaN NaN 17.928 1 15.341 14.841 15.841 -2.5866 0 0 0 0.88449 1 9414 9414 19.257 0 1 27772 12728 18586 18951 32741 32741 -0.017042554130057397 KNPAMEKL 8 Unmodified _KNPAMEKL_ 0 0 0 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 465.2245483398438 2 465.757495 929.500437 0.51236 0.00023863 -1.2038 -0.00056067 -0.69142 -0.00032204 465.7571183426991 44.86 0.31163 40.008 39.905 40.216 -4.852 32 20 2 0 0 0 8.7369 1 27600 27600 12.532 0.89125 1 12254000 27773 7147 18587 18952 32742 32742 0.03286729025387558 KNPAMEKLEL 10 Unmodified _KNPAMEKLEL_ 0 0 0 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5492858886719 3 391.549641 1171.62709 0.73282 0.00028693 -1.2649 -0.00049525 -0.53204 -0.00020832 391.5490551519925 47.194 0.53059 47.161 47.035 47.566 -0.033417 44 25 3 0 0 0 0.69917 1 25474 25474 1.4551 0 1 4207400 27774 7147 18588 18953 32743 32743 0.04814610459857249 KNPFNMEVL 9 Unmodified _KNPFNMEVL_ 0 0 0 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.2046813964844 3 364.523315 1090.54812 -0.19525 -7.1173E-05 0.19872 7.2438E-05 0.0034694 1.2647E-06 364.5234141624453 31.022 0.26001 31.022 30.892 31.152 0 22 12 2 0 0 0 0.21473 1 16122 16122 2.4985 0 1 2620300 27775 6476 18589 18954 32744 32744 0.00646383225603131 KNPFNMEVL 9 Unmodified _KNPFNMEVL_ 0 0 0 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 364.523315 1090.54812 0.3469 0.00012645 -0.35811 -0.00013054 -0.011211 -4.0866E-06 364.5235837439324 31.021 0.16903 30.919 30.815 30.984 -0.10269 0.072608 -0.00041248 NaN 2.4985 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 957710 27776 6476 18589 18954 0.00646383225603131 KNPILKQML 9 Unmodified _KNPILKQML_ 0 0 0 ENSG00000146221|ENST00000371505|TCTE1 ENSG00000146221|ENST00000371505|TCTE1 ENSG00000146221|ENST00000371505|TCTE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2235412597656 3 362.223088 1083.64744 0.16513 5.9813E-05 -0.143 -5.1799E-05 0.022127 8.0148E-06 362.22321291380143 39.115 0.21657 39.127 39.021 39.238 0.011456 20 9 3 0 0 0 0.5029 1 20824 20824 4.5289 0 1 1773000 27777 5762 18590 18955 32745 32745 0.10895825910347412 KNPMKSRKMS 10 Unmodified _KNPMKSRKMS_ 0 0 0 ENST00000266069.4_1_20:61572861-61572942:+|nuORF ENST00000266069.4_1_20:61572861-61572942:+|nuORF ENST00000266069.4_1_20:61572861-61572942:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.783203125 2 603.825918 1205.63728 -0.65871 -0.00039775 2.1399 0.0012921 1.4812 0.00089438 603.8271352430893 30.739 0.24377 30.739 30.628 30.872 0 18 11 2 0 0 0 0.23412 1 15929 15929 9.3831 5.7866 1 2547900 27778 11340 18591 18956 32746 32746 0.04268894913479926 KNQFYPNSWFR 11 Unmodified _KNQFYPNSWFR_ 0 0 0 REV__nc|ENSG00000235217|Q9H489|TSPY26P REV__nc|ENSG00000235217|Q9H489|TSPY26P MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2447814941406 3 496.245721 1485.71533 0.56666 0.0002812 -0.53533 -0.00026566 0.03133 1.5547E-05 496.2455750833846 22.502 0.33265 19.724 19.554 19.887 -2.7784 51 18 4 0 0 0 0.67892 2 12165 12054;12165 6.2344 3.7996 1 11793000 + 27779 27594 18592 18957 32747;32748 32748 -0.008096329053159934 KNQKERTCLH 10 Unmodified _KNQKERTCLH_ 0 0 0 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.8898315429688 3 419.555789 1255.64554 NaN NaN NaN NaN NaN NaN NaN 57.247 1 57.181 56.681 57.681 -0.066036 0 0 0 0.97592 1 31157 31157 1.5923 0.89462 1 27780 6212 18593 18958 32749 32749 0.027941651544324486 KNQSVHKGKQL 11 Unmodified _KNQSVHKGKQL_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9143676757812 3 422.914083 1265.72042 NaN NaN NaN NaN NaN NaN NaN 39.058 1 39.069 38.569 39.569 0.011452 0 0 0 0.93737 1 20794 20794 4.4062 0 1 + 27781 22894 18594 18959 32750 32750 0.0981867095731559 KNRETWYLS 9 Unmodified _KNRETWYLS_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5406799316406 3 399.540134 1195.59857 -0.12436 -4.9688E-05 1.4351 0.00057338 1.3107 0.00052369 399.5407019550795 15.858 0.22745 15.863 15.737 15.964 0.0050564 24 17 2 0 0 0 0.59218 1 7935 7935 0.96228 0.18574 1 832000 27782 2129 18595 18960 32751 32751 0.008596288749458836 KNRETWYLS 9 Unmodified _KNRETWYLS_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 399.540134 1195.59857 0.771 0.00030804 1.3277 0.00053047 2.0987 0.00083851 399.54084743619 18.284 0.17411 15.663 15.594 15.768 -2.6215 -0.10003 -0.00010765 NaN 0.96228 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1634900 27783 2129 18595 18960 0.008596288749458836 KNRFGLPG 8 Unmodified _KNRFGLPG_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.757080078125 2 444.756144 887.497735 1.0464 0.0004654 1.2173 0.0005414 2.2637 0.0010068 444.756650304662 58.138 0.59051 58.077 57.935 58.526 -0.060719 70 29 3 0 0 0 0.80676 1 31677 31677 2.5775 0 1 9803600 27784 293;15801 18596 18961 32752 32752 0.049486416827676294 KNRLPLPTI 9 Unmodified _KNRLPLPTI_ 0 0 0 ENSG00000135049|ENST00000357081|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2258911132812 3 351.225598 1050.65496 1.8887 0.00066337 -0.94519 -0.00033197 0.94353 0.00033139 351.22529410176355 21.054 0.35816 18.361 18.205 18.563 -2.693 42 19 3 0 0 0 0.46162 1 11339 11339 9.544 3.3521 1 4606700 27785 4664 18597 18962 32753 32753 0.13166301502269562 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2505798339844 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 64.86 1 64.86 64.36 65.36 0 0 0 0 0.85261 1 36176 36176 1.1933 0.41681 1 + 27786 29240 18598 18963 32754 32754 0.13866287788118825 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5329284667969 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 39.478 1 39.489 38.989 39.989 0.011452 0 0 0 0.84021 1 21028 21028 2.7352 0 1 + 27787 29240 18598 18963 32755 32755 0.13866287788118825 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2522583007812 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 46.027 1 45.999 45.499 46.499 -0.028011 0 0 0 0.85447 1 24749 24749 0.96228 0.18574 1 + 27788 29240 18598 18963 32756 32756 0.13866287788118825 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.250732421875 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 49.923 1 49.874 49.374 50.374 -0.048824 0 0 0 0.86031 1 26990 26990 0.23584 0 1 + 27789 29240 18598 18963 32757 32757 0.13866287788118825 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2499389648438 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 59.31 1 59.257 58.757 59.757 -0.053062 0 0 0 0.85359 1 32319 32319 1.0715 0.3738 1 + 27790 29240 18598 18963 32758 32758 0.13866287788118825 KNRPGRRRR 9 Unmodified _KNRPGRRRR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2505187988281 3 399.250022 1194.72824 NaN NaN NaN NaN NaN NaN NaN 72.914 1 72.956 72.456 73.456 0.041725 0 0 0 0.86004 1 40161 40161 0.26902 0 1 + 27791 29240 18598 18963 32759 32759 0.13866287788118825 KNRTQNRGV 9 Unmodified _KNRTQNRGV_ 0 0 0 REV__ENST00000333957.8_1_12:22646210-22646249:-|nuORF REV__ENST00000333957.8_1_12:22646210-22646249:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2037353515625 3 358.203856 1071.58974 NaN NaN NaN NaN NaN NaN NaN 33.64 1 33.669 33.169 34.169 0.028934 0 0 0 0.84737 1 17706 17706 0.96228 0 1 + 27792 25624 18599 18964 32760 32760 0.05680700029142827 KNRVILFFV 9 Unmodified _KNRVILFFV_ 0 0 0 REV__ENST00000474981.1_1_22:24451582-24452941:+|nuORF REV__ENST00000474981.1_1_22:24451582-24452941:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8855590820312 3 379.237726 1134.69135 0.58024 0.00022005 0.11449 4.3417E-05 0.69473 0.00026347 379.2375580778056 64.922 0.3374 64.922 64.739 65.077 7.6294E-06 48 16 4 0 0 0 0.2188 1 35483 35483 1.0715 0 1 14724000 + 27793 27567 18600 18965 32761 32761 0.1293917839898313 KNRVILFFV 9 Unmodified _KNRVILFFV_ 0 0 0 REV__ENST00000474981.1_1_22:24451582-24452941:+|nuORF REV__ENST00000474981.1_1_22:24451582-24452941:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.237726 1134.69135 0.15665 5.9409E-05 1.1252 0.00042671 1.2818 0.00048612 379.238030392424 65.502 0.24805 65.018 64.876 65.124 -0.48428 0.025936 0.00075973 NaN 1.0715 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1647400 + 27794 27567 18600 18965 0.1293917839898313 KNRVQNMAL 9 Unmodified _KNRVQNMAL_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5342407226562 3 358.534326 1072.58115 1.2088 0.00043338 -0.92373 -0.00033119 0.28503 0.00010219 358.53399131731754 26.672 0.28074 23.721 23.522 23.803 -2.9511 21 14 2 0 0 0 0.41742 1 14707 14707 7.609 0 1 5990000 27795 8928 18601 18966 32762 32762 0.04776010068303549 KNSHHPTL 8 Unmodified _KNSHHPTL_ 0 0 0 ENST00000229812.7_1_6:36463177-36463339:-|nuORF ENST00000229812.7_1_6:36463177-36463339:-|nuORF ENST00000229812.7_1_6:36463177-36463339:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 467.6250610351562 2 467.248683 932.482814 0.65537 0.00030622 -0.27946 -0.00013058 0.37591 0.00017565 467.24948044934075 101.79 0.38306 95.616 95.574 95.957 -6.1757 79 22 4 0 0 0 8.7369 1 68303 68303 2.0598 1.2661 1 60049000 27796 11066 18602 18967 32763 32763 0.013871498147636885 KNSKDIQKLL 10 Unmodified _KNSKDIQKLL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000573364.1_1_17:80890567-80895237:+|nuORF;nc|ENSG00000141556|Q9BTW9-2|TBCD;ENST00000576677.5_1_17:80888388-80900336:+|nuORF;ENST00000576603.5_1_17:80889830-80900336:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.2012023925781 3 396.243317 1185.70812 0.70838 0.00028069 -0.20985 -8.3152E-05 0.49853 0.00019754 396.24322852901406 44.924 0.18741 40.072 39.975 40.162 -4.852 14 11 2 0 0 0 0.23806 1 27419 27419 5.7834 0 1 8301700 27797 5350 18603 18968 32764 32764 0.122696344942824 KNSTKILKTI 10 Unmodified _KNSTKILKTI_ 0 0 0 ENST00000437629.6_2_10:88911265-88911343:+|nuORF ENST00000437629.6_2_10:88911265-88911343:+|nuORF ENST00000437629.6_2_10:88911265-88911343:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.3648681640625 2 573.366256 1144.71796 1.654 0.00094835 -1.024 -0.00058711 0.63003 0.00036124 573.3654482260349 103.22 0.13418 97.045 96.974 97.108 -6.1757 61 39 2 0 0 0 0.71276 1 69220 69220 1.4819 0.95714 1 8110000 27798 13354 18604 18969 32765 32765 0.15138822499670823 KNTAYFYSRF 10 Unmodified _KNTAYFYSRF_ 0 0 0 ENSG00000083782|ENST00000261172|EPYC ENSG00000083782|ENST00000261172|EPYC ENSG00000083782|ENST00000261172|EPYC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8848571777344 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 103.21 1 103.16 102.66 103.66 -0.047928 0 0 0 1.0004 1 57316 57316 0.62683 0.21856 1 27799 1372 18605 18970 32766 32766 -0.006117980909721155 KNVAIVRF 8 Unmodified _KNVAIVRF_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7954406738281 2 473.795269 945.575986 0.5669 0.00026859 -0.47641 -0.00022572 0.09049 4.2874E-05 473.7951939209042 58.462 0.50552 58.402 58.215 58.72 -0.060719 53 25 4 0 0 0 0.80143 1 31928 31928 5.7604 0 1 10375000 + 27800 23082 18606 18971 32767 32767 0.10102074267979333 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8794555664062 3 352.878198 1055.61277 0.1939 6.8423E-05 2.2378 0.00078965 2.4317 0.00085808 352.87908879478096 39.612 0.30807 39.624 39.427 39.736 0.011456 21 14 2 0 0 0 0.58865 1 21111 21111 1.0715 0.10919 1 1394700 + 27801 21902 18607 18972 32768 32768 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8786926269531 3 352.878198 1055.61277 -0.30438 -0.00010741 1.2842 0.00045315 0.97979 0.00034575 352.8785932130411 41.733 0.40867 41.731 41.64 42.049 -0.0017929 32 19 2 0 0 0 0.58865 1 22325 22325 1.0715 0.10919 1 9142100 + 27802 21902 18607 18972 32769 32769 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2125549316406 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 45.19 1 45.162 44.662 45.662 -0.028011 0 0 0 0.84369 1 24265 24265 1.1933 0.12188 1 + 27803 21902 18607 18972 32770 32770 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8790588378906 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 46.39 1 46.356 45.856 46.856 -0.033417 0 0 0 0.82396 1 24957 24957 2.7352 0.23671 1 + 27804 21902 18607 18972 32771 32771 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8791809082031 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 46.588 1 46.555 46.055 47.055 -0.033417 0 0 0 0.84564 1 25070 25070 1.0715 0.29493 1 + 27805 21902 18607 18972 32772 32772 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8909606933594 3 352.878198 1055.61277 1.129 0.00039841 0.34826 0.00012289 1.4773 0.0005213 352.87832752333935 46.955 0.32053 46.922 46.617 46.938 -0.033421 20 15 2 0 0 0 0.20727 1 25154 25154 4.897 0.36815 1 1237400 + 27806 21902 18607 18972 32773 32773 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 352.878198 1055.61277 0.15518 5.4758E-05 0.68717 0.00024249 0.84235 0.00029725 352.8780670058689 39.469 0.12912 39.469 39.424 39.553 0 -0.077017 -0.0014705 NaN 1.0715 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 763580 + 27807 21902 18607 18972 0.08718326093890028 KNVLSLVFH 9 Unmodified _KNVLSLVFH_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.878198 1055.61277 0.1939 6.8423E-05 2.2378 0.00078965 2.4317 0.00085808 352.87908879478096 39.612 0.30807 39.624 39.427 39.736 0.011456 0.077017 0.00017099 NaN 1.0715 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1394700 + 27808 21902 18607 18972 0.08718326093890028 KNVQHLLM 8 Unmodified _KNVQHLLM_ 0 0 0 REV__ENSG00000168612|ENST00000372523|ZSWIM1 REV__ENSG00000168612|ENST00000372523|ZSWIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7778015136719 2 491.778762 981.542971 0.32467 0.00015966 -1.3978 -0.00068743 -1.0732 -0.00052777 491.77790622385425 68.012 0.56931 68.012 67.675 68.244 0 54 27 3 0 0 0 0.80722 1 37992 37992 2.3027 0.24298 1 2203200 + 27809 22328 18608 18973 32774 32774 0.05146124153645815 KNWCDEPRHI 10 Unmodified _KNWCDEPRHI_ 0 0 0 REV__ENSG00000173085|ENST00000647002|COQ2 REV__ENSG00000173085|ENST00000647002|COQ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8814697265625 3 433.20839 1296.60334 0.57681 0.00024988 -0.2242 -9.7123E-05 0.35261 0.00015275 433.2083247733727 69.387 1.4599 69.418 68.668 70.128 0.030914 220 75 7 0 0 0 0.71981 1 38030 38030 0.69767 0.07084 1 118170000 + 27810 22703 18609 18974 32775 32775 -0.03309810253949763 KNWKQFSLWF 10 Unmodified _KNWKQFSLWF_ 0 0 0 REV__ENST00000415861.2_1_6:109689555-109689642:-|nuORF REV__ENST00000415861.2_1_6:109689555-109689642:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 461.9134216308594 3 461.91179 1382.71354 NaN NaN NaN NaN NaN NaN NaN 34.703 1 30.608 30.108 31.108 -4.0951 0 0 0 0.97302 1 20038 20038 1.7423 0 1 + 27811 26761 18610 18975 32776 32776 0.03749358076743192 KNWRDLDARI 10 Unmodified _KNWRDLDARI_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.7164611816406 3 429.570316 1285.68912 1.3257 0.00056949 -0.20571 -8.8365E-05 1.12 0.00048112 429.57024640925033 21.57 0.32621 18.835 18.669 18.995 -2.7348 74 23 4 0 0 0 0.59286 1 11480 11480 11.518 1.2026 1 8283100 27812 3812 18611 18976 32777 32777 0.057700979232322425 KNYIKLVKKR 10 Unmodified _KNYIKLVKKR_ 0 0 0 REV__ENSG00000020426|ENST00000261245|MNAT1 REV__ENSG00000020426|ENST00000261245|MNAT1 MSMS AL20221201_MKP_PDAC_01 4 645.423828125 2 645.424439 1288.83433 NaN NaN NaN NaN NaN NaN NaN 103.92 1 97.746 97.246 98.246 -6.1757 0 0 0 1.0024 1 69635 69635 0.40072 0 1 + 27813 17107 18612 18977 32778 32778 0.2014618579019043 KNYNLVESLKL 11 Unmodified _KNYNLVESLKL_ 0 0 0 ENSG00000099937|ENST00000215727|SERPIND1 ENSG00000099937|ENST00000215727|SERPIND1 ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.9227294921875 3 440.922244 1319.7449 0.51964 0.00022912 0.50915 0.00022449 1.0288 0.00045361 440.9223556215247 49 0.36581 48.956 48.81 49.175 -0.04369 50 17 4 0 0 0 0.71938 1 26536 26536 2.4348 0.50728 1 24580000 + 27814 1721 18613 18978 32779 32779 0.0978188632018373 KNYSYHRVYRF 11 Unmodified _KNYSYHRVYRF_ 0 0 0 REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF REV__ENST00000505732.5_1_9:15186859-15307321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.5968933105469 3 511.596753 1531.76843 0.094328 4.8258E-05 -0.042744 -2.1868E-05 0.051584 2.639E-05 511.59648592646624 58.373 0.24628 57.882 57.759 58.005 -0.49079 26 11 3 0 0 0 0.73992 1 31730 31730 0.50596 0 1 1997000 + 27815 28074 18614 18979 32780 32780 0.02381744877334313 KPAAQMPP 8 Unmodified _KPAAQMPP_ 0 0 0 ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF ENST00000494673.1_1_6:31243358-31244615:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2251586914062 2 420.225831 838.437109 -0.59034 -0.00024808 0.38435 0.00016151 -0.20599 -8.6562E-05 420.22611074431904 33.75 0.17333 33.75 33.667 33.841 0 13 8 2 0 0 0 0.72953 1 17726 17726 14.582 3.4672 1 1941600 27816 14337 18615 18980 32781 32781 0.01142788308152376 KPAAYVKFTL 10 Unmodified _KPAAYVKFTL_ 0 0 0 REV__nc|ENSG00000184831|Q9BUR5-2|APOO REV__nc|ENSG00000184831|Q9BUR5-2|APOO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8944091796875 3 379.893737 1136.65938 1.333 0.00050639 0.47231 0.00017943 1.8053 0.00068582 379.8938044060205 50.08 0.28221 50.031 49.865 50.148 -0.048828 28 13 3 0 0 0 0.69377 1 27132 27132 1.7423 0.67081 1 3408100 + 27817 23446 18616 18981 32782 32782 0.09651765925173095 KPAELIAKY 9 Unmodified _KPAELIAKY_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.8080444335938 2 516.808042 1031.60153 0.061989 3.2036E-05 0.025937 1.3405E-05 0.087926 4.5441E-05 516.8080355453667 31.036 0.26223 31.036 30.932 31.194 0 40 12 4 0 0 0 0.0026383 1 16137 16137 128.57 14.387 1 15268000 27818 6576 18617 18982 32783 32783 0.08699503999764602 KPAELIAKY 9 Unmodified _KPAELIAKY_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.8085327148438 2 516.808042 1031.60153 0.27527 0.00014226 0.32377 0.00016733 0.59904 0.00030959 516.8081127879047 31.046 0.2604 30.943 30.792 31.053 -0.10269 22 10 3 0 0 0 0.0091809 1 16117 16117 84.522 12.814 1 4308900 27819 6576 18617 18982 32784 32784 0.08699503999764602 KPAELIAKY 9 Unmodified _KPAELIAKY_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8080444335938 2 516.808042 1031.60153 0.86462 0.00044685 -0.74175 -0.00038334 0.12287 6.3502E-05 516.8075277060933 34.338 0.48548 30.242 29.987 30.473 -4.0951 70 27 3 0 0 0 0.0091809 2 19731 19731;19851 84.522 3.8656 1 71242000 27820 6576 18617 18982 32785;32786 32785 0.08699503999764602 KPAELIAKY 9 Unmodified _KPAELIAKY_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.808042 1031.60153 -0.033176 -1.7145E-05 0.79991 0.0004134 0.76673 0.00039625 516.8083662969005 30.848 0.23359 30.878 30.737 30.97 0.030104 -0.074507 0.00049742 NaN 128.57 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1106300 27821 6576 18617 18982 0.08699503999764602 KPAFFAEKL 9 Unmodified _KPAFFAEKL_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8019409179688 2 525.80276 1049.59097 NaN NaN NaN NaN NaN NaN NaN 45.787 1 45.463 44.963 45.963 -0.32425 0 0 0 0.01742 1 24479 24479 81.915 14.077 1 27822 4662 18618 18983 32787 32787 0.06815521345333764 KPAFFAEKL 9 Unmodified _KPAFFAEKL_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.802490234375 2 525.80276 1049.59097 0.037499 1.9717E-05 0.66168 0.00034791 0.69918 0.00036763 525.8030264142583 45.463 0.23932 45.435 45.343 45.582 -0.028011 21 12 2 0 0 0 0.00016425 1 24428 24428 151.48 78.512 1 7542100 27823 4662 18618 18983 32788 32788 0.06815521345333764 KPAFFAEKL 9 Unmodified _KPAFFAEKL_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8031616210938 2 525.80276 1049.59097 0.94587 0.00049734 0.50632 0.00026623 1.4522 0.00076357 525.8029924851677 49.979 0.47755 44.44 44.218 44.695 -5.5391 69 30 3 0 0 0 0.00097698 2 31306 31172;31306 139.78 66.814 1 38451000 27824 4662 18618 18983 32789;32790 32790 0.06815521345333764 KPAFFAEKL 9 Unmodified _KPAFFAEKL_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8711547851562 3 350.870932 1049.59097 1.6171 0.00056738 0.29038 0.00010189 1.9074 0.00066927 350.8709695530088 50.038 0.42751 44.498 44.236 44.663 -5.5391 62 27 3 0 0 0 0.032796 2 31225 31225;31358 42.312 27.907 1 23329000 27825 4662 18618 18983 32791;32792 32791 0.06815521345333764 KPAGAELRRAF 11 Unmodified _KPAGAELRRAF_ 0 0 0 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 ENSG00000168348|ENST00000307169|INSM2 MSMS AL20221201_MKP_PDAC_01 4 405.9043273925781 3 405.903406 1214.68839 NaN NaN NaN NaN NaN NaN NaN 92.227 1 86.051 85.551 86.551 -6.1757 0 0 0 0.92174 1 60984 60984 6.2344 4.328 1 27826 7750 18619 18984 32793 32793 0.08963303274185819 KPAGHCHG 8 Unmodified _KPAGHCHG_ 0 0 0 ENST00000378182.3_1_13:50571396-50571693:+|nuORF ENST00000378182.3_1_13:50571396-50571693:+|nuORF ENST00000378182.3_1_13:50571396-50571693:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 806.3763427734375 1 806.372617 805.365341 1.914 0.0015434 2.7069 0.0021828 4.6209 0.0037262 806.3748917785451 103.98 0.043198 97.806 97.778 97.822 -6.1757 22 13 2 0 0 0 0.80992 1 69663 69663 0.69038 0 1 6473300 27827 12540 18620 18985 32794 32794 -0.04512706325692761 KPAGPPGILAL 11 Unmodified _KPAGPPGILAL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3243408203125 2 517.32386 1032.63317 0.52054 0.00026929 0.39733 0.00020555 0.91787 0.00047484 517.3241061710052 64.535 0.36464 64.05 63.844 64.209 -0.48512 47 16 4 0 0 0 0.24216 1 35211 35211 29.841 9.387 1 5485100 27828 1800 18621 18986 32795 32795 0.11815496753706611 KPAGPPGILAL 11 Unmodified _KPAGPPGILAL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3241577148438 2 517.32386 1032.63317 1.0528 0.00054464 -0.32718 -0.00016926 0.72562 0.00037538 517.3236956654855 64.068 0.4514 64.057 63.825 64.276 -0.010536 69 22 4 0 0 0 0.21511 2 35105 34995;35105 31.268 4.5373 1 22154000 27829 1800 18621 18986 32796;32797 32797 0.11815496753706611 KPAGPPGILAL 11 Unmodified _KPAGPPGILAL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.758544921875 2 517.32386 1032.63317 0.94544 0.0004891 1.2378 0.00064032 2.1832 0.0011294 517.3252067154818 68.725 0.68721 62.549 62.275 62.962 -6.1757 79 38 3 0 0 0 0.27675 1 45070 45070 20.415 4.5674 1 86180000 27830 1800 18621 18986 32798 32798 0.11815496753706611 KPAIMKRLI 9 Unmodified _KPAIMKRLI_ 0 0 0 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 MSMS AL20221201_MKP_PDAC_01 4 535.3473510742188 2 535.349354 1068.68416 NaN NaN NaN NaN NaN NaN NaN 105.83 1 99.656 99.156 100.16 -6.1757 0 0 0 0.85798 1 70882 70882 0.52476 0 1 27831 6473 18622 18987 32799 32799 0.15256122526898253 KPAINNISL 9 Unmodified _KPAINNISL_ 0 0 0 ENSG00000177076|ENST00000340967|ACER2;nc|ENSG00000177076|Q5QJU3-2|ACER2;nc|ENSG00000177076|Q5QJU3-3|ACER2 ENSG00000177076|ENST00000340967|ACER2 ENSG00000177076|ENST00000340967|ACER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2902526855469 2 485.290017 968.565481 0.67061 0.00032544 -0.4721 -0.00022911 0.19851 9.6333E-05 485.28974009439577 46.43 0.21398 46.094 45.976 46.19 -0.33664 14 10 2 0 0 0 0.05447 1 24863 24863 43.858 9.4566 1 3286800 27832 8654 18623 18988 32800 32800 0.07994046822898326 KPALLHSTF 9 Unmodified _KPALLHSTF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2921447753906 2 507.292559 1012.57057 -0.77168 -0.00039147 0.16274 8.2557E-05 -0.60894 -0.00030891 507.2925939621538 35.74 0.31568 35.517 35.372 35.688 -0.2224 31 13 3 0 0 0 0.009483 1 18700 18700 81.89 41.933 1 5246100 27833 5208 18624 18989 32801 32801 0.06478350685506484 KPALLHSTF 9 Unmodified _KPALLHSTF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2920227050781 2 507.292559 1012.57057 0.11321 5.7432E-05 -0.075193 -3.8145E-05 0.038019 1.9287E-05 507.2924856176477 35.461 0.35986 35.486 35.285 35.645 0.024967 37 16 3 0 0 0 0.0021556 2 18695 18695;18800 131.27 75.765 1 8934800 27834 5208 18624 18989 32802;32803 32802 0.06478350685506484 KPALLHSTF 9 Unmodified _KPALLHSTF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2928466796875 2 507.292559 1012.57057 0.4054 0.00020566 -0.27406 -0.00013903 0.13134 6.6629E-05 507.29249573976085 39.677 0.45195 35.226 35.042 35.494 -4.4509 44 28 2 0 0 0 0.00035873 2 23538 23538;23679 147.06 88.38 1 33254000 27835 5208 18624 18989 32804;32805 32804 0.06478350685506484 KPAPLTPAY 9 Unmodified _KPAPLTPAY_ 0 0 0 nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7 nc|ENSG00000102606|Q14155-5|ARHGEF7 nc|ENSG00000102606|Q14155-5|ARHGEF7 MSMS AL20221201_MKP_PDAC_01 4 479.2723388671875 2 479.273835 956.533118 NaN NaN NaN NaN NaN NaN NaN 38.752 1 34.302 33.802 34.802 -4.4509 0 0 0 0.08978 1 22909 22909 46.021 22.873 1 27836 2057 18625 18990 32806 32806 0.05311259419875114 KPAPPEPDYR 10 Unmodified _KPAPPEPDYR_ 0 0 0 ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3031005859375 2 585.301113 1168.58767 1.3017 0.00076191 0.60182 0.00035225 1.9036 0.0011142 585.3012378927654 35.954 0.35769 31.761 31.541 31.899 -4.1928 33 22 2 0 0 0 0.27276 1 20926 20926 29.082 1.4528 1 6684600 27837 5067 18626 18991 32807 32807 0.010122265006430098 KPAPPEPDYR 10 Unmodified _KPAPPEPDYR_ 0 0 0 ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.301113 1168.58767 -0.12842 -7.5162E-05 0.86191 0.00050448 0.7335 0.00042932 585.3019929173629 32.072 0.14903 31.942 31.866 32.015 -0.12915 0.090472 0.00026337 NaN 29.082 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 657990 27838 5067 18626 18991 0.010122265006430098 KPAPPEPDYR 10 Unmodified _KPAPPEPDYR_ 0 0 0 ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF ENSG00000138606|ENST00000690270|SHF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 585.301113 1168.58767 1.3017 0.00076191 0.60182 0.00035225 1.9036 0.0011142 585.3012378927654 35.954 0.35769 31.761 31.541 31.899 -4.1928 -0.090472 -4.1087E-05 NaN 29.082 33 22 2 NaN NaN NaN NaN 0 NaN NaN 0 6684600 27839 5067 18626 18991 0.010122265006430098 KPAPRKQI 8 Unmodified _KPAPRKQI_ 0 0 0 ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1 ENST00000528758.1_1_11:7507087-7531416:+|nuORF ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2381896972656 2 469.300719 936.586885 1.1146 0.00052308 -0.65402 -0.00030693 0.46058 0.00021615 469.30039510984517 21.101 0.30165 18.408 18.225 18.526 -2.693 35 16 3 0 0 0 0.78849 1 11202 11202 9.3474 0.75416 1 5505300 27840 14863 18627 18992 32808 32808 0.11605476642262147 KPASVFVQL 9 Unmodified _KPASVFVQL_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7945556640625 2 494.794935 987.575317 0.57647 0.00028524 0.91019 0.00045036 1.4867 0.00073559 494.79535026355916 57.599 0.24275 57.109 56.984 57.226 -0.48974 19 11 2 0 0 0 0.047788 1 31301 31301 45.7 1.8413 1 2647300 27841 2642 18628 18993 32809 32809 0.08103234828286077 KPASVFVQL 9 Unmodified _KPASVFVQL_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7963562011719 2 494.794935 987.575317 0.93102 0.00046066 0.51854 0.00025657 1.4496 0.00071723 494.7951903804911 57.202 0.32118 57.136 56.998 57.319 -0.066036 35 15 3 0 0 0 0.025842 1 31112 31112 57.722 5.4536 1 8784700 27842 2642 18628 18993 32810 32810 0.08103234828286077 KPATSYVRTTI 11 Unmodified _KPATSYVRTTI_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;ENST00000464124.2_1_5:124144562-124144799:-|nuORF ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.9043273925781 3 412.903072 1235.68739 1.5427 0.000637 1.411 0.00058262 2.9538 0.0012196 412.90405423793203 34.001 0.69689 30.015 29.643 30.34 -3.9853 67 38 3 0 0 0 0.14064 2 19588 19460;19588 36.955 26.939 1 18683000 27843 2548 18629 18994 32811;32812 32812 0.07897044114588425 KPATSYVRTTI 11 Unmodified _KPATSYVRTTI_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;ENST00000464124.2_1_5:124144562-124144799:-|nuORF ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3533325195312 2 618.85097 1235.68739 1.1839 0.00073264 -0.8915 -0.00055171 0.29237 0.00018093 618.8506248420674 34.019 0.29185 30.034 29.858 30.15 -3.9853 22 15 2 0 0 0 0.0094206 1 19538 19538 68.484 28.245 1 7180900 27844 2548 18629 18994 32813 32813 0.07897044114588425 KPCICGDVPI 10 Unmodified _KPCICGDVPI_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC;REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2244873046875 2 522.764463 1043.51437 NaN NaN NaN NaN NaN NaN NaN 66.092 1 65.609 65.109 66.109 -0.48323 0 0 0 0.76313 1 36080 36080 13.906 0.86358 1 + 27845 29474;24335 18630 18995 32814 32814 -0.005643615378176037 KPCVPKIA 8 Unmodified _KPCVPKIA_ 0 0 0 REV__ENSG00000160505|ENST00000301295|NLRP4 REV__ENSG00000160505|ENST00000301295|NLRP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2603149414062 2 428.259674 854.504795 NaN NaN NaN NaN NaN NaN NaN 100.09 1 100.06 99.557 100.56 -0.036301 0 0 0 0.97444 1 55594 55594 0.69038 0 1 + 27846 21548 18631 18996 32815 32815 0.07172238238956652 KPDGTYIVM 9 Unmodified _KPDGTYIVM_ 0 0 0 ENSG00000158825|ENST00000375071|CDA ENSG00000158825|ENST00000375071|CDA ENSG00000158825|ENST00000375071|CDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2633056640625 2 512.26261 1022.51067 0.99083 0.00050756 0.18878 9.6705E-05 1.1796 0.00060427 512.2626778609135 50.271 0.47793 44.731 44.466 44.944 -5.5391 62 30 3 0 0 0 0.10247 1 31531 31531 32.786 7.7947 1 37437000 27847 6611 18632 18997 32816 32816 0.0003129195997644274 KPDLRRPP 8 Unmodified _KPDLRRPP_ 0 0 0 REV__ENSG00000215217|ENST00000399810|CFAP90 REV__ENSG00000215217|ENST00000399810|CFAP90 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.796142578125 2 489.795801 977.577048 0.83993 0.00041139 -0.51595 -0.00025271 0.32398 0.00015869 489.7954664246969 47.204 0.2534 46.852 46.685 46.938 -0.3526 20 12 2 0 0 0 0.72664 1 25269 25269 14.838 1.3304 1 3086900 + 27848 24337 18633 18998 32817 32817 0.08736288636885092 KPDMNCCNFT 10 Unmodified _KPDMNCCNFT_ 0 0 0 REV__nc|ENSG00000070759|Q96S53-2|TESK2 REV__nc|ENSG00000070759|Q96S53-2|TESK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7308349609375 2 586.730294 1171.44604 0.0062709 3.6793E-06 1.4165 0.0008311 1.4228 0.00083478 586.7310739804733 25.037 0.29471 22.154 21.945 22.24 -2.8831 41 27 2 0 0 0 0.67033 1 13584 13584 6.2058 2.2614 1 11877000 + 27849 17480 18634 18999 32818 32818 -0.1328297417999238 KPDNLWRSD 9 Unmodified _KPDNLWRSD_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MSMS AL20221201_MKP_PDAC_01 4 377.5233459472656 3 377.524484 1129.55162 NaN NaN NaN NaN NaN NaN NaN 16.234 1 13.677 13.177 14.177 -2.557 0 0 0 0.83049 1 8395 8395 2.2828 0.69049 1 + 27850 17564 18635 19000 32819 32819 -0.007972306761985237 KPDPNTLCDE 10 Carbamidomethyl (C) _KPDPNTLC(Carbamidomethyl (C))DE_ KPDPNTLC(1)DE KPDPNTLC(57)DE 0 1 0 CON__P02769 CON__P02769 CON__P02769 MSMS AL20221201_MKP_PDAC_01 4 594.7638549804688 2 594.763703 1187.51285 NaN NaN NaN NaN NaN NaN NaN 24.442 1 21.614 21.114 22.114 -2.8273 0 0 0 0.050349 1 13309 13309 57.249 13.391 1 + 27851 162 18636 19001 32820 32820 4 -0.07340324092888295 KPDQQKLQAL 10 Unmodified _KPDQQKLQAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2271423339844 3 390.227667 1167.66117 -0.45088 -0.00017595 -0.42953 -0.00016762 -0.88042 -0.00034356 390.227504353339 24.934 0.37235 24.934 24.678 25.051 0 78 34 3 0 0 0 0.16361 2 12762 12667;12762 32.898 18.06 1 5585400 27852 7097 18637 19002 32821;32822 32822 0.08404774943142002 KPDQQKLQAL 10 Unmodified _KPDQQKLQAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.8388671875 2 584.837862 1167.66117 -0.37588 -0.00021983 -0.40861 -0.00023897 -0.78449 -0.0004588 584.8371687921428 24.909 0.22872 24.909 24.718 24.946 0 29 13 3 0 0 0 0.095172 1 12713 12713 47.732 25.074 1 1449500 27853 7097 18637 19002 32823 32823 0.08404774943142002 KPDQQKLQAL 10 Unmodified _KPDQQKLQAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2284545898438 3 390.227667 1167.66117 0.79225 0.00030916 -0.28962 -0.00011302 0.50262 0.00019614 390.227609670832 27.294 0.47364 24.257 24.022 24.496 -3.0365 43 23 2 0 0 0 0.1899 1 15015 15015 30.431 10.445 1 34201000 27854 7097 18637 19002 32824 32824 0.08404774943142002 KPDQQKLQAL 10 Unmodified _KPDQQKLQAL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS AL20221201_MKP_PDAC_01 4 584.8381958007812 2 584.837862 1167.66117 NaN NaN NaN NaN NaN NaN NaN 27.299 1 24.262 23.762 24.762 -3.0365 0 0 0 6.787499999999999E-23 1 15116 15116 171.46 109.86 1 27855 7097 18637 19002 32825 32825 0.08404774943142002 KPDSTLHTY 9 Unmodified _KPDSTLHTY_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7693481445312 2 531.266739 1060.51892 -0.23294 -0.00012375 1.8095 0.00096131 1.5765 0.00083756 531.267722015661 18.702 0.16639 18.702 18.62 18.786 0 27 17 2 0 0 0 0.56345 1 9288 9288 3.5965 1.5367 1 547370 27856 3468 18638 19003 32826 32826 -0.008914377990549838 KPEARMPRL 9 Unmodified _KPEARMPRL_ 0 0 0 ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5458068847656 3 366.546454 1096.61753 0.047498 1.741E-05 -2.3526 -0.00086235 -2.3051 -0.00084494 366.5456408646255 19.83 0.19632 19.838 19.734 19.93 0.0078487 15 9 2 0 0 0 0.54444 1 10082 10082 2.7352 0 1 617270 27857 6565 18639 19004 32827 32827 0.07308886965006423 KPEARMPRL 9 Unmodified _KPEARMPRL_ 0 0 0 ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 366.546454 1096.61753 0.047498 1.741E-05 -2.3526 -0.00086235 -2.3051 -0.00084494 366.5456408646255 19.83 0.19632 19.838 19.734 19.93 0.0078487 0 0 NaN 2.7352 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 617270 27858 6565 18639 19004 0.07308886965006423 KPEEIQTVY 9 Unmodified _KPEEIQTVY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7897338867188 2 553.790047 1105.56554 -0.11729 -6.4952E-05 -0.70982 -0.00039309 -0.8271 -0.00045804 553.7898274805913 33.277 0.32766 33.277 33.088 33.415 0 34 16 3 0 0 0 0.025842 1 17403 17403 57.722 28.64 1 10133000 27859 8612 18640 19005 32828 32828 0.01698002032230761 KPEEIQTVY 9 Unmodified _KPEEIQTVY_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7889404296875 2 553.790047 1105.56554 1.2108 0.00067051 -1.6853 -0.00093328 -0.47448 -0.00026276 553.7886841634524 37.733 0.45911 33.364 33.157 33.616 -4.3689 46 27 2 0 0 0 0.0090524 2 22210 22092;22210 85.642 41.783 1 17324000 27860 8612 18640 19005 32829;32830 32830 0.01698002032230761 KPEEQRQAL 9 Unmodified _KPEEQRQAL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8686218261719 3 366.86825 1097.58292 0.79425 0.00029139 0.39918 0.00014645 1.1934 0.00043783 366.8683361843715 15.286 0.18075 12.759 12.674 12.855 -2.5273 52 34 2 0 0 0 0.1773 1 7798 7798 23.79 0 1 4877200 27861 16412 18641 19006 32831 32831 0.03803342357900874 KPEEQRQAL 9 Unmodified _KPEEQRQAL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7999267578125 2 549.798737 1097.58292 0.1155 6.3503E-05 -0.21845 -0.0001201 -0.10295 -5.6601E-05 549.7981968511359 15.228 0.080183 12.7 12.674 12.754 -2.5273 13 11 2 0 0 0 0.4887 1 7812 7812 8.1555 2.8586 1 1151900 27862 16412 18641 19006 32832 32832 0.03803342357900874 KPEKDQLK 8 Unmodified _KPEKDQLK_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-3|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.287353515625 2 493.287474 984.560395 NaN NaN NaN NaN NaN NaN NaN 21.127 1 21.127 20.627 21.627 0 0 0 0 0.97132 1 10670 10670 6.2058 0 1 27863 1297 18642 19007 32833 32833 0.06749742960289495 KPEKWNTAA 9 Unmodified _KPEKWNTAA_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.27685546875 2 522.777274 1043.53999 1.4894 0.00077865 0.17878 9.3462E-05 1.6682 0.00087211 522.7772536979077 47.48 0.82049 42.246 41.92 42.74 -5.2339 133 50 4 0 0 0 0.34999 1 29665 29665 14.838 4.0143 1 274370000 + 27864 23822 18643 19008 32834 32834 0.019965723004588654 KPENLTTF 8 Unmodified _KPENLTTF_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 949.4981689453125 1 949.498923 948.491647 0.73358 0.00069653 2.1827 0.0020724 2.9162 0.002769 949.5012820140488 61.658 0.32358 55.482 55.351 55.674 -6.1757 21 16 2 0 0 0 0.46677 1 39698 39698 37.974 9.4872 1 15464000 + 27865 19029 18644 19009 32835 32835 0.015340786605634094 KPEVFYLD 8 Unmodified _KPEVFYLD_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7649841308594 2 505.7633 1009.51205 0.38234 0.00019337 0.023512 1.1891E-05 0.40585 0.00020526 505.7633070374187 64.728 1.3137 64.728 64.214 65.528 0 172 59 4 0 0 0 0.71527 1 35857 35857 15.847 3.3156 1 29121000 + 27866 23742 18645 19010 32836 32836 0.0076724932038132465 KPEVPREKL 9 Unmodified _KPEVPREKL_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MSMS AL20221201_MKP_PDAC_01 4 365.8891296386719 3 365.888874 1094.64479 NaN NaN NaN NaN NaN NaN NaN 22.37 1 19.619 19.119 20.119 -2.7503 0 0 0 0.326 1 12029 12029 23.801 3.2201 1 27867 6391;16287 18646 19011 32837 32837 0.10125693777035849 KPFANQEEY 9 Unmodified _KPFANQEEY_ 0 0 0 nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;nc|ENSG00000005469|Q9UKG9-2|CROT nc|ENSG00000005469|Q9UKG9-3|CROT nc|ENSG00000005469|Q9UKG9-3|CROT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2655639648438 2 563.264196 1124.51384 NaN NaN NaN NaN NaN NaN NaN 25.774 1 25.774 25.274 26.274 0 0 0 0 0.18978 1 13226 13226 41.84 13.353 1 27868 309 18647 19012 32838 32838 -0.04343741661659806 KPFCNNETF 9 Carbamidomethyl (C) _KPFC(Carbamidomethyl (C))NNETF_ KPFC(1)NNETF KPFC(85)NNETF 0 1 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.758056640625 2 578.758223 1155.50189 1.2008 0.00069495 -2.185 -0.0012646 -0.98422 -0.00056963 578.757514179001 37.756 0.48692 33.387 33.11 33.597 -4.3689 51 29 2 0 0 0 0.0090948 2 22197 22077;22197 85.272 20.037 1 16471000 27869 696 18648 19013 32839;32840 32840 52 -0.06963681676506894 KPFCNNETF 9 Carbamidomethyl (C) _KPFC(Carbamidomethyl (C))NNETF_ 0 1 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.758223 1155.50189 -0.24321 -0.00014076 -2.9505 -0.0017076 -3.1937 -0.0018484 578.7568561102169 33.41 0.25082 33.41 33.183 33.434 0 0.0113 -0.00071595 NaN 85.272 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2023600 27870 696 18648 19013 52 -0.06963681676506894 KPFDAMNNI 9 Unmodified _KPFDAMNNI_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000605457.5_1_6:112392617-112397333:-|nuORF;ENST00000604689.1_1_6:112397138-112397468:-|nuORF ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397138-112397468:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5075073242188 3 350.507665 1048.50117 1.1366 0.00039839 -0.72789 -0.00025513 0.40871 0.00014325 350.5073285016084 27.937 0.43532 24.789 24.587 25.022 -3.1482 52 23 3 0 0 0 0.5029 1 15585 15585 4.5289 0 1 36623000 27871 1138;15841 18649 19014 32841 32841 -0.02114476325573378 KPFDFPSVF 9 Unmodified _KPFDFPSVF_ 0 0 0 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2789306640625 2 542.279118 1082.54368 0.18404 9.9802E-05 -1.0542 -0.00057166 -0.87015 -0.00047186 542.278728822664 80.403 0.26722 80.46 80.384 80.652 0.057587 14 11 2 0 0 0 0.094149 1 44456 44456 34.402 3.7652 1 9197400 27872 10924 18650 19015 32842 32842 0.005712420743293478 KPFDFPSVF 9 Unmodified _KPFDFPSVF_ 0 0 0 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 ENSG00000277462|ENST00000366503|ZNF670 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.62548828125 2 542.279118 1082.54368 1.2553 0.00068075 -0.15013 -8.1414E-05 1.1052 0.00059933 542.2793671181205 97.25 0.36627 91.074 90.895 91.261 -6.1757 42 20 3 0 0 0 0.047788 2 64399 64399;64550 45.7 15.063 1 29184000 27873 10924 18650 19015 32843;32844 32843 0.005712420743293478 KPFDLVIPF 9 Unmodified _KPFDLVIPF_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3136596679688 2 538.312961 1074.61137 1.7648 0.00095001 -1.0644 -0.00057299 0.70037 0.00037702 538.3122879868743 93.07 0.47993 93.093 92.847 93.327 0.022987 68 18 4 0 0 0 0.018301 2 51767 51664;51767 65.235 34.598 1 44153000 27874 16209 18651 19016 32845;32846 32846 0.07704692005108882 KPFDLVIPF 9 Unmodified _KPFDLVIPF_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.312255859375 2 538.312961 1074.61137 0.77323 0.00041624 -0.41526 -0.00022354 0.35797 0.0001927 538.3127329396725 99.968 0.15175 93.792 93.703 93.855 -6.1757 31 10 4 0 0 0 0.044011 1 66739 66739 47.749 15.443 1 337750000 27875 16209 18651 19016 32847 32847 0.07704692005108882 KPFEAFLSF 9 Unmodified _KPFEAFLSF_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.286376953125 2 543.286943 1084.55933 1.4498 0.00078768 0.023073 1.2535E-05 1.4729 0.00080021 543.2869725784703 98.301 0.24007 92.125 92.027 92.267 -6.1757 28 15 3 0 0 0 0.017075 1 65168 65168 66.457 8.9853 1 48541000 27876 3197 18652 19017 32848 32848 0.020435285913663392 KPFEQVKGITL 11 Unmodified _KPFEQVKGITL_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5835266113281 3 420.583451 1258.72852 0.26568 0.00011174 0.80384 0.00033808 1.0695 0.00044982 420.5836067895916 48.566 0.29434 48.523 48.359 48.654 -0.04369 36 14 3 0 0 0 0.091371 1 26183 26183 43.477 29.259 1 5096900 27877 6143 18653 19018 32849 32849 0.10950805154084264 KPFEQVKGITL 11 Unmodified _KPFEQVKGITL_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5834045410156 3 420.583451 1258.72852 1.5432 0.00064904 0.058419 2.457E-05 1.6016 0.00067361 420.5833655649458 53.863 0.3159 48.059 47.863 48.179 -5.8042 36 19 3 0 0 0 0.13384 2 33989 33989;34104 38.559 26.331 1 12819000 27878 6143 18653 19018 32850;32851 32850 0.10950805154084264 KPFEQVKGITL 11 Unmodified _KPFEQVKGITL_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 420.583451 1258.72852 0.28155 0.00011842 0.40948 0.00017222 0.69104 0.00029064 420.5834153074259 48.88 0.22805 48.509 48.407 48.635 -0.37172 -0.0070491 -0.00032293 NaN 43.477 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2755800 27879 6143 18653 19018 0.10950805154084264 KPFFRLQKFLR 11 Unmodified _KPFFRLQKFLR_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 740.4494018554688 2 740.450988 1478.88742 NaN NaN NaN NaN NaN NaN NaN 84.623 1 84.686 84.186 85.186 0.063171 0 0 0 0.94307 1 46831 46831 0.30703 0.30703 1 27880 8827 18654 19019 32852 32852 0.16713563572852763 KPFGGGRA 8 Unmodified _KPFGGGRA_ 0 0 0 REV__ENST00000338353.3_1_1:166135560-166136198:-|nuORF REV__ENST00000338353.3_1_1:166135560-166136198:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2223510742188 2 395.221937 788.429321 -0.35415 -0.00013997 1.6656 0.00065827 1.3114 0.0005183 395.2224759638437 31.915 0.52425 31.945 31.67 32.195 0.030104 42 23 2 0 0 0 0.80722 1 16813 16813 2.3027 0 1 4381800 + 27881 25671 18655 19020 32853 32853 0.026643971028988744 KPFGTLLHTY 10 Unmodified _KPFGTLLHTY_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8262329101562 2 588.824224 1175.63389 0.83323 0.00049063 0.46757 0.00027532 1.3008 0.00076594 588.8245301232333 46.236 0.22707 46.202 46.059 46.286 -0.033417 21 10 3 0 0 0 6.7445E-07 1 24856 24856 133.05 105.42 1 6341800 27882 4087;13617 18656 19021 32854 32854 0.05310291402770417 KPFKLSGLSF 10 Unmodified _KPFKLSGLSF_ 0 0 0 ENSG00000175130|ENST00000329421|MARCKSL1 ENSG00000175130|ENST00000329421|MARCKSL1 ENSG00000175130|ENST00000329421|MARCKSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3287353515625 2 562.329142 1122.64373 1.1896 0.00066897 -0.15172 -8.5314E-05 1.0379 0.00058366 562.3288511704062 58.193 0.15663 58.133 58.058 58.215 -0.060719 12 7 2 0 0 0 0.1605 1 31696 31696 43.982 12.714 1 2007500 27883 8486 18657 19022 32855 32855 0.08731479408129417 KPFNPLLGETY 11 Unmodified _KPFNPLLGETY_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.8399658203125 2 639.840071 1277.66559 NaN NaN NaN NaN NaN NaN NaN 61.486 1 61.486 60.986 61.986 0 0 0 0 0.89305 1 34280 34280 7.609 1.4032 1 27884 4240;5332 18658 19023 32856 32856 0.03786239366058908 KPFNPLLGETY 11 Unmodified _KPFNPLLGETY_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.8400268554688 2 639.840071 1277.66559 0.21871 0.00013994 0.12859 8.228E-05 0.34731 0.00022222 639.8399918378416 61.95 0.33311 61.463 61.305 61.638 -0.48764 50 15 4 0 0 0 0.01584 2 33789 33691;33789 61.602 33.973 1 21204000 27885 4240;5332 18658 19023 32857;32858 32858 0.03786239366058908 KPFNPLLGETY 11 Unmodified _KPFNPLLGETY_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8410034179688 2 639.840071 1277.66559 0.32685 0.00020913 0.4201 0.0002688 0.74694 0.00047792 639.8404315222714 61.538 0.31603 61.506 61.355 61.671 -0.032787 36 15 3 0 0 0 0.0041032 1 33567 33567 76.825 41.893 1 10702000 27886 4240;5332 18658 19023 32859 32859 0.03786239366058908 KPFNPLLGETY 11 Unmodified _KPFNPLLGETY_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8408203125 2 639.840071 1277.66559 0.57404 0.00036729 -0.025794 -1.6504E-05 0.54824 0.00035079 639.8401065941323 67.381 0.70831 61.205 60.808 61.517 -6.1757 99 39 3 0 0 0 5.0416E-09 3 43722 43722;43844;43984 114.2 90.181 1 31391000 27887 4240;5332 18658 19023 32860;32861;32862 32860 0.03786239366058908 KPFNPLLGETY 11 Unmodified _KPFNPLLGETY_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2;nc|ENSG00000130703|Q9H1P3-2|OSBPL2 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;ENSG00000130703|ENST00000313733|OSBPL2 ENSG00000130703|ENST00000313733|OSBPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.84228515625 2 639.840071 1277.66559 0.5881 0.00037629 0.49194 0.00031476 1.08 0.00069105 639.8407982691938 69.49 0.56982 63.314 63.029 63.599 -6.1757 42 30 2 0 0 0 0.00071774 1 45420 45420 86.332 62.311 1 13803000 27888 4240;5332 18658 19023 32863 32863 0.03786239366058908 KPFNPVLGETY 11 Unmodified _KPFNPVLGETY_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.834228515625 2 632.832246 1263.64994 1.219 0.00077145 0.68871 0.00043584 1.9078 0.0012073 632.8332244744155 59.019 0.34374 52.945 52.756 53.1 -6.0745 29 18 2 0 0 0 0.01584 1 37902 37902 61.602 31.761 1 18837000 27889 1043;16055 18659 19024 32864 32864 0.028659528489924924 KPFNPVLGETY 11 Unmodified _KPFNPVLGETY_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENST00000579728.5_1_17:45885659-45892067:-|nuORF;ENST00000583167.5_1_17:45885659-45892067:-|nuORF;ENSG00000006025|ENST00000007414|OSBPL7;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 632.832246 1263.64994 0.036601 2.3162E-05 -1.0363 -0.00065579 -0.99968 -0.00063263 632.8311255059583 53.163 0.28691 52.711 52.554 52.841 -0.45173 -0.11666 -0.00079704 NaN 61.602 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3932500 27890 1043;16055 18659 19024 0.028659528489924924 KPFSSFTSM 9 Oxidation (M) _KPFSSFTSM(Oxidation (M))_ KPFSSFTSM(1) KPFSSFTSM(42) 0 0 1 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2448120117188 2 524.244418 1046.47428 0.032668 1.7126E-05 -0.19074 -9.9993E-05 -0.15807 -8.2867E-05 524.2445772220204 34.601 0.2347 34.628 34.478 34.713 0.027401 27 10 4 0 0 0 0.062454 1 18248 18248 41.956 7.8531 1 1966500 27891 7874 18660 19025 32865 32865 1336 -0.04709584936745159 KPFSSHHSF 9 Unmodified _KPFSSHHSF_ 0 0 0 ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF ENSG00000196646|ENST00000343979|ZNF136 ENSG00000196646|ENST00000343979|ZNF136 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5101928710938 3 358.510286 1072.50903 1.1205 0.0004017 -0.32263 -0.00011567 0.79784 0.00028603 358.5100894286995 17.478 0.21946 14.891 14.788 15.007 -2.5866 92 45 3 0 0 0 0.30562 1 9140 9140 11.495 6.5977 1 16156000 27892 9853 18661 19026 32866 32866 -0.024325810137497683 KPFTNKDAY 9 Unmodified _KPFTNKDAY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.85400390625 3 361.85383 1082.53966 NaN NaN NaN NaN NaN NaN NaN 18.615 1 18.615 18.115 19.115 0 0 0 0 0.6032 1 9266 9266 8.1555 3.2585 1 27893 16379 18662 19027 32867 32867 0.0016915258061089844 KPFTNKDAY 9 Unmodified _KPFTNKDAY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2789306640625 2 542.277106 1082.53966 0.9899 0.0005368 1.4225 0.00077141 2.4124 0.0013082 542.2780149907799 19.971 0.23455 17.314 17.22 17.455 -2.6564 15 12 2 0 0 0 0.062454 1 10627 10627 41.956 25.806 1 746860 27894 16379 18662 19027 32868 32868 0.0016915258061089844 KPFTNKDAY 9 Unmodified _KPFTNKDAY_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0228271484375 3 361.85383 1082.53966 1.7862 0.00064636 0.74376 0.00026913 2.53 0.00091549 361.85414869463176 20.022 0.27249 17.366 17.22 17.493 -2.6564 32 15 3 0 0 0 0.20399 1 10634 10634 7.1017 7.1017 1 1817900 27895 16379 18662 19027 32869 32869 0.0016915258061089844 KPGAGARINLM 11 Unmodified _KPGAGARINLM_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS AL20221201_MKP_PDAC_01 4 376.8843994140625 3 376.549976 1126.6281 NaN NaN NaN NaN NaN NaN NaN 15.582 1 13.054 12.554 13.554 -2.5273 0 0 0 0.93933 1 8007 8007 1.2148 0 1 + 27896 22894 18663 19028 32870 32870 0.06984869619418532 KPGDFARTL 9 Unmodified _KPGDFARTL_ 0 0 0 ENST00000579647.1_1_18:2652767-2653031:-|nuORF ENST00000579647.1_1_18:2652767-2653031:-|nuORF ENST00000579647.1_1_18:2652767-2653031:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.780029296875 2 502.779816 1003.54508 -0.076881 -3.8654E-05 2.5263 0.0012702 2.4494 0.0012315 502.7812561043564 30.5 0.19027 30.531 30.434 30.625 0.030106 14 8 2 0 0 0 0.032796 1 15947 15947 53.833 2.9778 1 2055600 27897 15550 18664 19029 32871 32871 0.04344876163088429 KPGEGGII 8 Unmodified _KPGEGGII_ 0 0 0 REV__nc|ENSG00000165195|P37287-3|PIGA REV__nc|ENSG00000165195|P37287-3|PIGA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2337036132812 2 385.723978 769.433404 0.076184 2.9386E-05 3.7247 0.0014367 3.8008 0.0014661 385.72539814055455 28.594 0.25956 28.624 28.494 28.753 0.029564 11 9 2 0 0 0 8.7369 1 14950 14950 10.183 0.83596 1 1132200 + 27898 21992 18665 19030 32872 32872 0.03946441805953782 KPGFIKVVR 9 Unmodified _KPGFIKVVR_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3403930664062 2 522.339844 1042.66514 -0.67629 -0.00035325 -0.37871 -0.00019782 -1.055 -0.00055107 522.3395787549902 105.09 0.076012 105.04 105.01 105.09 -0.048737 31 20 2 0 0 0 0.61381 1 58324 58324 0.52476 0.52476 1 6804800 27899 2712 18666 19031 32873 32873 0.14550909227500597 KPGFIKVVR 9 Unmodified _KPGFIKVVR_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS AL20221201_MKP_PDAC_01 4 522.3394775390625 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 107.3 1 101.13 100.63 101.63 -6.1757 0 0 0 0.84737 1 71777 71777 1.8442 1.3195 1 27900 2712 18666 19031 32874 32874 0.14550909227500597 KPGFIKVVR 9 Unmodified _KPGFIKVVR_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS AL20221201_MKP_PDAC_01 4 522.3391723632812 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 108.03 1 101.85 101.35 102.35 -6.1757 0 0 0 0.85798 1 72214 72214 0.52476 0 1 27901 2712 18666 19031 32875 32875 0.14550909227500597 KPGFIKVVR 9 Unmodified _KPGFIKVVR_ 0 0 0 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 ENSG00000110328|ENST00000227756|GALNT18 MSMS AL20221201_MKP_PDAC_01 4 522.3405151367188 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 108.26 1 102.08 101.58 102.58 -6.1757 0 0 0 0.85798 1 72361 72361 0.52476 0 1 27902 2712 18666 19031 32876 32876 0.14550909227500597 KPGIKLTL 8 Unmodified _KPGIKLTL_ 0 0 0 ENSG00000213585|ENST00000265333|VDAC1;ENST00000489906.5_1_5:133308464-133311792:-|nuORF ENSG00000213585|ENST00000265333|VDAC1 ENSG00000213585|ENST00000265333|VDAC1 MSMS AL20221201_MKP_PDAC_01 4 435.2943420410156 2 435.294571 868.574589 NaN NaN NaN NaN NaN NaN NaN 46.23 1 41.275 40.775 41.775 -4.9549 0 0 0 0.59568 1 28513 28513 34.402 2.0962 1 27903 10444 18667 19032 32877 32877 0.13504440179224275 KPGIMKKVI 9 Unmodified _KPGIMKKVI_ 0 0 0 ENST00000325042.2_1_7:22766279-22767222:-|nuORF ENST00000325042.2_1_7:22766279-22767222:-|nuORF ENST00000325042.2_1_7:22766279-22767222:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.333740234375 2 507.33063 1012.64671 NaN NaN NaN NaN NaN NaN NaN 106.28 1 100.1 99.6 100.6 -6.1757 0 0 0 0.85798 1 71145 71145 0.52476 0.52476 1 27904 11809 18668 19033 32878 32878 0.14089031261300988 KPGKAPKRLI 10 Unmodified _KPGKAPKRLI_ 0 0 0 nc|ENSG00000240382|P01599|IGKV1-17 nc|ENSG00000240382|P01599|IGKV1-17 nc|ENSG00000240382|P01599|IGKV1-17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3724365234375 2 554.371675 1106.7288 1.6213 0.0008988 0.46375 0.00025709 2.085 0.0011559 554.3719400363572 105.94 0.70319 99.768 99.568 100.27 -6.1757 204 97 3 0 0 0 0.71123 2 70852 70852;71165 1.6526 1.0511 1 7662200 27905 16569 18669 19034 32879;32880 32879 0.179702696646018 KPGKFVTTL 9 Unmodified _KPGKFVTTL_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.802978515625 2 495.80276 989.590967 0.022792 1.13E-05 0.051116 2.5343E-05 0.073908 3.6644E-05 495.8028750262705 32.383 0.23925 32.413 32.279 32.518 0.029743 15 9 2 0 0 0 0.19361 1 17017 17017 23.79 6.6769 1 1796700 27906 3715 18670 19035 32881 32881 0.09575521345323068 KPGKFVTTL 9 Unmodified _KPGKFVTTL_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1;nc|ENSG00000123505|P17707-2|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.8033142089844 2 495.80276 989.590967 1.0985 0.00054463 0.2329 0.00011547 1.3314 0.0006601 495.80272240193585 36.111 0.29627 31.918 31.741 32.037 -4.1928 28 17 2 0 0 0 0.10247 1 21018 21018 32.786 7.3864 1 5647600 27907 3715 18670 19035 32882 32882 0.09575521345323068 KPGKLEII 8 Unmodified _KPGKLEII_ 0 0 0 ENST00000475072.1_1_21:34915398-34918735:+|nuORF ENST00000475072.1_1_21:34915398-34918735:+|nuORF ENST00000475072.1_1_21:34915398-34918735:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2896423339844 2 449.292028 896.569503 1.716 0.00077097 -1.7569 -0.00078936 -0.040934 -1.8391E-05 449.29093674502815 104.92 0.23714 98.743 98.566 98.803 -6.1757 30 23 2 0 0 0 0.80676 1 70199 70199 2.5775 0 1 24266000 27908 13951 18671 19036 32883 32883 0.11708136316599393 KPGKVVKEL 9 Unmodified _KPGKVVKEL_ 0 0 0 nc|ENSG00000144504|Q9P2S6-2|ANKMY1 nc|ENSG00000144504|Q9P2S6-2|ANKMY1 nc|ENSG00000144504|Q9P2S6-2|ANKMY1 MSMS AL20221201_MKP_PDAC_01 4 498.8398742675781 2 499.32386 996.633166 NaN NaN NaN NaN NaN NaN NaN 104.77 1 98.593 98.093 99.093 -6.1757 0 0 0 0.84737 1 70138 70138 1.8442 0 1 27909 16249 18672 19037 32884 32884 0.1347149675369792 KPGLFSLTL 9 Unmodified _KPGLFSLTL_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2975769042969 2 488.29731 974.580068 0.62265 0.00030404 0.23269 0.00011362 0.85534 0.00041766 488.29744004052327 78.578 0.41194 78.63 78.394 78.806 0.052452 31 16 3 0 0 0 0.044011 1 43381 43381 47.749 3.8904 1 3349200 27910 2233 18673 19038 32885 32885 0.0917611897103825 KPGLFSLTL 9 Unmodified _KPGLFSLTL_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2973327636719 2 488.29731 974.580068 1.2207 0.00059607 0.32192 0.00015719 1.5426 0.00075326 488.2972366598296 97.857 0.21355 91.681 91.587 91.8 -6.1757 30 13 3 0 0 0 0.044011 1 64826 64826 47.749 3.8904 1 23434000 27911 2233 18673 19038 32886 32886 0.0917611897103825 KPGLFSLTL 9 Unmodified _KPGLFSLTL_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.29731 974.580068 0.62265 0.00030404 0.23269 0.00011362 0.85534 0.00041766 488.29744004052327 78.578 0.41194 78.63 78.394 78.806 0.052452 0 0 NaN 47.749 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3349200 27912 2233 18673 19038 0.0917611897103825 KPGLILVAT 9 Unmodified _KPGLILVAT_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2997131347656 2 456.299853 910.585153 1.6422 0.00074933 -0.58258 -0.00026583 1.0596 0.00048349 456.29928581768434 105.25 0.34517 99.073 98.891 99.236 -6.1757 261 82 5 0 0 0 0.61381 1 70524 70524 0.52476 0 1 10916000000 + 27913 19535 18674 19039 32887 32887 0.1262842283365444 KPGLILVAT 9 Unmodified _KPGLILVAT_ 0 0 0 REV__ENSG00000125999|ENST00000253354|BPIFB1 REV__ENSG00000125999|ENST00000253354|BPIFB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.3008728027344 2 456.299853 910.585153 1.643 0.0007497 -0.22368 -0.00010206 1.4193 0.00064763 456.30013438178554 105.43 0.29778 99.256 99.192 99.489 -6.1757 70 45 2 0 0 0 0.59218 1 70650 70650 1.8442 1.3195 1 34215000 + 27914 19535 18674 19039 32888 32888 0.1262842283365444 KPGLRPRTAL 10 Unmodified _KPGLRPRTAL_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2371215820312 3 370.236497 1107.68766 1.2593 0.00046623 -0.41133 -0.00015229 0.84795 0.00031394 370.23643519893403 22.301 0.26211 19.567 19.452 19.714 -2.7348 22 13 2 0 0 0 0.68371 1 11975 11975 4.7159 2.0847 1 3720800 27915 4553 18675 19040 32889 32889 0.13812508625119335 KPGLRPRTAL 10 Unmodified _KPGLRPRTAL_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 370.236497 1107.68766 0.054357 2.0125E-05 0.10847 4.0159E-05 0.16282 6.0283E-05 370.23623242284276 19.46 0.091862 19.468 19.389 19.481 0.0078506 -0.049478 0.00050776 NaN 4.7159 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 290580 27916 4553 18675 19040 0.13812508625119335 KPGLRSQL 8 Unmodified _KPGLRSQL_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MSMS AL20221201_MKP_PDAC_01 4 449.7773132324219 2 449.777077 897.5396 NaN NaN NaN NaN NaN NaN NaN 21.977 1 19.242 18.742 19.742 -2.7348 0 0 0 0.97444 1 11804 11804 3.5965 0 1 27917 3164 18676 19041 32890 32890 0.08673197371274455 KPGPVGPEL 9 Unmodified _KPGPVGPEL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.25830078125 2 447.258185 892.501818 -0.12702 -5.681E-05 -0.5374 -0.00024036 -0.66442 -0.00029717 447.25785310916024 35.253 0.38396 35.253 35.016 35.4 0 35 19 2 0 0 0 0.094149 1 18607 18607 34.402 16.267 1 3045300 27918 6157 18677 19042 32891 32891 0.05126686385801804 KPGPVGPEL 9 Unmodified _KPGPVGPEL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 447.258185 892.501818 0.86215 0.0003856 0.28539 0.00012764 1.1475 0.00051325 447.2583376671486 39.558 0.52925 35.107 34.84 35.37 -4.4509 -0.073073 0.00025288 NaN 34.402 39 32 2 NaN NaN NaN NaN 0 NaN NaN 0 7563700 27919 6157 18677 19042 0.05126686385801804 KPGPVSRL 8 Unmodified _KPGPVSRL_ 0 0 0 REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF REV__ENST00000567385.5_1_16:48265837-48278487:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2659912109375 2 427.266345 852.518136 1.2187 0.0005207 -0.81022 -0.00034618 0.40845 0.00017452 427.26601180003763 19.567 0.23276 16.911 16.857 17.09 -2.6564 26 17 2 0 0 0 0.66338 1 10385 10385 20.454 2.3186 1 3016300 + 27920 28929 18678 19043 32892 32892 0.08597812342566158 KPGVPPKPLKA 11 Unmodified _KPGVPPKPLKA_ 0 0 0 REV__ENST00000596242.5_1_19:4325153-4327208:-|nuORF REV__ENST00000596242.5_1_19:4325153-4327208:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.3674926757812 2 566.366059 1130.71756 NaN NaN NaN NaN NaN NaN NaN 106.09 1 99.912 99.412 100.41 -6.1757 0 0 0 0.94307 1 71034 71034 0.30703 0.30703 1 + 27921 23021 18679 19044 32893 32893 0.15743447570457647 KPHEGIIHSL 10 Unmodified _KPHEGIIHSL_ 0 0 0 ENSG00000158863|ENST00000289921|FHIP2B;ENST00000462914.3_1_8:21957359-21958496:+|nuORF;ENST00000491733.2_1_8:21958038-21958496:+|nuORF ENSG00000158863|ENST00000289921|FHIP2B ENSG00000158863|ENST00000289921|FHIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8831176757812 3 377.548741 1129.62439 -0.50276 -0.00018982 0.3479 0.00013135 -0.15486 -5.8469E-05 377.5487915452218 25.964 0.20741 25.964 25.84 26.047 0 14 9 2 0 0 0 0.49559 1 13322 13322 16.566 8.9569 1 897790 27922 6614 18680 19045 32894 32894 0.06476523117248689 KPHETYRLL 9 Unmodified _KPHETYRLL_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS AL20221201_MKP_PDAC_01 4 386.2213439941406 3 386.220624 1155.64004 NaN NaN NaN NaN NaN NaN NaN 29.842 1 26.54 26.04 27.04 -3.3016 0 0 0 0.019743 1 16806 16806 63.227 36.004 1 27923 1209 18681 19046 32895 32895 0.06844809634299054 KPHITEVTA 9 Unmodified _KPHITEVTA_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MSMS AL20221201_MKP_PDAC_01 4 498.2805786132812 2 498.279649 994.544745 NaN NaN NaN NaN NaN NaN NaN 22.579 1 19.8 19.3 20.3 -2.7784 0 0 0 0.34649 1 12149 12149 22.736 0.98964 1 27924 8636 18682 19047 32896 32896 0.047254564432250845 KPHLEGAAF 9 Unmodified _KPHLEGAAF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2608947753906 2 485.261259 968.507966 -0.39827 -0.00019326 0.020623 1.0008E-05 -0.37764 -0.00018326 485.2612948738922 28.713 0.43925 28.713 28.483 28.923 0 76 21 5 0 0 0 0.018301 2 14795 14795;14902 65.235 23.14 1 38669000 27925 4959 18683 19048 32897;32898 32897 0.022452046173157214 KPHLEGAAF 9 Unmodified _KPHLEGAAF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.26171875 2 485.261259 968.507966 0.79682 0.00038667 0.65779 0.0003192 1.4546 0.00070586 485.26142679471565 31.961 0.46178 28.265 28 28.461 -3.6958 86 25 4 0 0 0 0.018301 2 18200 18073;18200 65.235 23.14 1 90145000 27926 4959 18683 19048 32899;32900 32900 0.022452046173157214 KPHLEGAAF 9 Unmodified _KPHLEGAAF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 485.261259 968.507966 0.70812 0.00034362 -0.83209 -0.00040378 -0.12397 -6.0159E-05 485.2610182614591 28.687 0.19769 28.625 28.473 28.67 -0.062159 0.0027145 -0.00056216 NaN 65.235 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2373300 27927 4959 18683 19048 0.022452046173157214 KPHLGTLEI 9 Unmodified _KPHLGTLEI_ 0 0 0 REV__ENSG00000183337|ENST00000378444|BCOR REV__ENSG00000183337|ENST00000378444|BCOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2990417480469 2 504.297842 1006.58113 0.53772 0.00027117 -0.40171 -0.00020258 0.13601 6.8591E-05 504.29770649354987 46.274 0.3255 41.319 41.104 41.429 -4.9549 34 21 2 0 0 0 0.047788 1 28467 28467 45.7 0 1 15029000 + 27928 23340 18684 19049 32901 32901 0.0781033333993264 KPHLGTLEI 9 Unmodified _KPHLGTLEI_ 0 0 0 REV__ENSG00000183337|ENST00000378444|BCOR REV__ENSG00000183337|ENST00000378444|BCOR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2584228515625 2 504.297842 1006.58113 0.53772 0.00027117 -0.40171 -0.00020258 0.13601 6.8591E-05 504.29770649354987 46.274 0.3255 41.319 41.104 41.429 -4.9549 34 21 2 0 0 0 0.048075 1 28487 28487 47.749 0 1 15029000 + 27929 23340 18684 19049 32902 32902 0.0781033333993264 KPHPPPSGL 9 Unmodified _KPHPPPSGL_ 0 0 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2640075683594 2 465.263802 928.513051 0.65964 0.00030691 1.6317 0.00075915 2.2913 0.0010661 465.26459864411834 43.522 0.50843 38.757 38.525 39.034 -4.7648 56 32 3 0 0 0 0.16226 1 26362 26362 26.884 0 1 16546000 27930 2821 18685 19050 32903 32903 0.04593508479945285 KPHPSPTSL 9 Unmodified _KPHPSPTSL_ 0 0 0 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2660217285156 2 482.266542 962.51853 -0.30005 -0.0001447 0.64813 0.00031257 0.34808 0.00016787 482.2667706334432 18.978 0.12175 18.978 18.896 19.018 0 18 12 2 0 0 0 0.094149 1 9460 9460 34.402 12.655 1 602120 27931 3645 18686 19051 32904 32904 0.03577187271753246 KPHPSPTSL 9 Unmodified _KPHPSPTSL_ 0 0 0 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 ENSG00000122547|ENST00000242108|EEPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2662658691406 2 482.266542 962.51853 1.2273 0.00059187 0.19865 9.5802E-05 1.4259 0.00068767 482.2664202566989 20.449 0.23515 17.756 17.627 17.862 -2.693 17 11 2 0 0 0 0.010611 1 10889 10889 78.728 36.888 1 2135000 27932 3645 18686 19051 32905 32905 0.03577187271753246 KPHRLHRVKK 10 Unmodified _KPHRLHRVKK_ 0 0 0 REV__ENSG00000239810|ENST00000619922|PRAMEF11 REV__ENSG00000239810|ENST00000619922|PRAMEF11 MSMS AL20221201_MKP_PDAC_01 4 650.3878173828125 2 649.917647 1297.82074 NaN NaN NaN NaN NaN NaN NaN 104.58 1 98.406 97.906 98.906 -6.1757 0 0 0 1.0024 1 70029 70029 0.40072 0.093686 1 + 27933 24441 18687 19052 32906 32906 0.18374372801622485 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1977233886719 3 376.197931 1125.57196 -0.25541 -9.6084E-05 0.9328 0.00035092 0.6774 0.00025483 376.19825631091766 33.61 0.4295 33.451 33.27 33.7 -0.15918 37 17 3 0 0 0 0.34435 1 17502 17502 24.882 15.905 1 9330200 27934 7344 18688 19053 32907 32907 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1982116699219 3 376.197931 1125.57196 0.0027556 1.0367E-06 0.19557 7.3572E-05 0.19832 7.4609E-05 376.19799455475356 33.343 0.33982 33.372 33.163 33.503 0.028934 53 14 5 0 0 0 0.24511 2 17481 17481;17584 30.703 14.554 1 69835000 27935 7344 18688 19053 32908;32909 32908 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7932739257812 2 563.793258 1125.57196 0.41032 0.00023134 0.37323 0.00021042 0.78355 0.00044176 563.7935181933385 33.345 0.20592 33.374 33.231 33.437 0.028934 14 8 2 0 0 0 0.02847 1 17510 17510 61.602 42.345 1 3091500 27936 7344 18688 19053 32910 32910 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1979675292969 3 376.197931 1125.57196 1.0259 0.00038596 -0.29904 -0.0001125 0.7269 0.00027346 376.1977140464543 36.513 0.56589 32.229 31.991 32.557 -4.2835 88 34 3 0 0 0 0.078742 3 21345 21221;21345;21468 51.415 38.373 1 162570000 27937 7344 18688 19053 32911;32912;32913 32912 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7935791015625 2 563.793258 1125.57196 0.69257 0.00039047 -0.076398 -4.3073E-05 0.61617 0.00034739 563.7931757644972 36.522 0.30734 32.238 32.046 32.353 -4.2835 30 19 2 0 0 0 0.00083333 1 21290 21290 122.18 93.098 1 17642000 27938 7344 18688 19053 32914 32914 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1984252929688 3 376.197931 1125.57196 0.97236 0.0003658 0.19537 7.3496E-05 1.1677 0.0004393 376.53241684670274 77.234 0.92892 71.058 70.739 71.668 -6.1757 82 53 2 0 0 0 0.17253 3 50590 50425;50590;50790 37.075 16.66 1 14498000 27939 7344 18688 19053 32915;32916;32917 32916 0.014199847742702332 KPHSGFHVAF 10 Unmodified _KPHSGFHVAF_ 0 0 0 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 ENSG00000165487|ENST00000382374|MICU2 MSMS AL20221201_MKP_PDAC_01 4 563.79345703125 2 563.793258 1125.57196 NaN NaN NaN NaN NaN NaN NaN 36.653 1 32.369 31.869 32.869 -4.2835 0 0 0 0.043315 1 21424 21424 51.63 40.806 1 27940 7344 18688 19053 32918 32918 0.014199847742702332 KPHSRVQVF 9 Unmodified _KPHSRVQVF_ 0 0 0 ENST00000489173.1_1_3:52324715-52325174:+|nuORF;nc|ENSG00000168237|Q8IVS8-7|GLYCTK;nc|ENSG00000168237|Q8IVS8-2|GLYCTK;nc|ENSG00000168237|Q8IVS8-5|GLYCTK;nc|ENSG00000168237|Q8IVS8-4|GLYCTK;ENSG00000168237|ENST00000436784|GLYCTK ENST00000489173.1_1_3:52324715-52325174:+|nuORF ENST00000489173.1_1_3:52324715-52325174:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5458068847656 3 366.545331 1096.61416 1.5131 0.00055461 0.35679 0.00013078 1.8699 0.00068539 366.54534798525685 22.051 0.34914 19.316 19.122 19.471 -2.7348 43 19 3 0 0 0 0.44883 1 11865 11865 10.151 2.5416 1 3905700 27941 7733 18689 19054 32919 32919 0.06971960182659132 KPHTGPHIPGM 11 Unmodified _KPHTGPHIPGM_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1;ENST00000443361.1_1_9:108283251-108284913:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MSMS AL20221201_MKP_PDAC_01 4 391.2082214355469 3 391.206209 1170.5968 NaN NaN NaN NaN NaN NaN NaN 14.532 1 12.029 11.529 12.529 -2.5029 0 0 0 0.93933 1 7387 7387 1.2148 0 1 27942 8416;13421 18690 19055 32920 32920 0.01832296585325821 KPHVASLSF 9 Unmodified _KPHVASLSF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3 nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2769775390625 2 493.276909 984.539266 0.20949 0.00010333 1.8152 0.00089541 2.0247 0.00099875 493.27759618550886 38.224 0.24152 37.953 37.822 38.064 -0.27133 22 10 3 0 0 0 0.07087 1 20103 20103 39.95 13.066 1 2441000 27943 7258;30165;3073 18691 19056 32921 32921 0.04637777651430497 KPHVASLSF 9 Unmodified _KPHVASLSF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3 nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2765197753906 2 493.276909 984.539266 0.21962 0.00010834 -0.072294 -3.5661E-05 0.14733 7.2675E-05 493.2768427189977 37.832 0.21066 37.849 37.753 37.963 0.01704 14 9 2 0 0 0 0.047788 1 20108 20108 45.7 15.063 1 2092800 27944 7258;30165;3073 18691 19056 32922 32922 0.04637777651430497 KPIATVGESY 10 Unmodified _KPIATVGESY_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7842407226562 2 532.784764 1063.55498 -0.39163 -0.00020865 -1.5098 -0.00080438 -1.9014 -0.001013 532.784949892383 30.632 0.20642 30.632 30.484 30.69 0 14 9 2 0 0 0 0.22237 1 15928 15928 32.037 8.8891 1 915030 27945 9652 18692 19057 32923 32923 0.025740193778119647 KPIEPLHNL 9 Unmodified _KPIEPLHNL_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8115234375 2 530.811116 1059.60768 -0.10581 -5.6168E-05 0.25304 0.00013432 0.14723 7.815E-05 530.8112853757874 39.604 0.29955 39.307 39.112 39.412 -0.29716 31 13 3 0 0 0 0.094149 1 20834 20834 34.402 3.1334 1 3129500 27946 8311 18693 19058 32924 32924 0.0802602223127451 KPIEPLHNL 9 Unmodified _KPIEPLHNL_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8112182617188 2 530.811116 1059.60768 0.68234 0.0003622 -0.21099 -0.000112 0.47135 0.0002502 530.810825057707 43.385 0.42493 38.62 38.525 38.95 -4.7648 46 27 2 0 0 0 0.094149 1 26308 26308 34.402 3.1334 1 14184000 27947 8311 18693 19058 32925 32925 0.0802602223127451 KPIEPLHNL 9 Unmodified _KPIEPLHNL_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.811116 1059.60768 0.26061 0.00013834 1.0741 0.00057013 1.3347 0.00070846 530.8115917245071 39.227 0.25995 39.238 39.106 39.366 0.011456 -0.034406 0.00064029 NaN 34.402 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1083800 27948 8311 18693 19058 0.0802602223127451 KPIEPRREL 9 Unmodified _KPIEPRREL_ 0 0 0 ENST00000586872.5_1_19:16263808-16265310:+|nuORF;nc|ENSG00000196684|Q96JZ2-2|HSH2D;ENSG00000196684|ENST00000613986|HSH2D ENST00000586872.5_1_19:16263808-16265310:+|nuORF ENST00000586872.5_1_19:16263808-16265310:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8970031738281 3 379.89614 1136.66659 1.439 0.00054668 -1.0819 -0.00041103 0.35709 0.00013566 379.89568706285763 19.348 0.34133 16.692 16.508 16.85 -2.6564 74 29 3 0 0 0 0.36964 1 10184 10184 9.544 3.7605 1 33437000 27949 9861 18694 19059 32926 32926 0.10372498525589435 KPIEPRRELL 10 Unmodified _KPIEPRRELL_ 0 0 0 ENST00000586872.5_1_19:16263808-16265310:+|nuORF;nc|ENSG00000196684|Q96JZ2-2|HSH2D;ENSG00000196684|ENST00000613986|HSH2D ENST00000586872.5_1_19:16263808-16265310:+|nuORF ENST00000586872.5_1_19:16263808-16265310:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.5916748046875 3 417.590828 1249.75066 NaN NaN NaN NaN NaN NaN NaN 30.762 1 27.265 26.765 27.765 -3.497 0 0 0 0.75596 1 17386 17386 14.218 1.3456 1 27950 9861 18695 19060 32927 32927 0.13577029622501868 KPIEQLLGF 9 Unmodified _KPIEQLLGF_ 0 0 0 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8077392578125 2 522.808042 1043.60153 0.51742 0.00027051 1.7252 0.00090193 2.2426 0.0011724 522.8090868666789 72.477 0.28938 72 71.834 72.123 -0.47609 29 13 3 0 0 0 0.10247 1 39628 39628 32.786 12.371 1 3411900 27951 7467 18696 19061 32928 32928 0.08147503999771288 KPIEQLLGF 9 Unmodified _KPIEQLLGF_ 0 0 0 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 ENSG00000166295|ENST00000299381|ANAPC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8095703125 2 522.808042 1043.60153 1.1402 0.00059609 0.43543 0.00022765 1.5756 0.00082374 522.8082991474708 92.137 0.66684 85.962 85.648 86.315 -6.1757 55 39 2 0 0 0 0.05483 1 60841 60841 43.772 22.235 1 14034000 27952 7467 18696 19061 32929 32929 0.08147503999771288 KPIESFNEY 9 Unmodified _KPIESFNEY_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2 ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2759399414062 2 563.774396 1125.53424 1.56 0.00087951 -0.15921 -8.9756E-05 1.4008 0.00078976 563.774718194454 41.899 0.68983 37.291 36.879 37.569 -4.6079 83 43 2 0 0 0 0.05483 1 25416 25416 43.772 0 1 110000000 27953 2508;1418 18697 19062 32930 32930 -0.02350571001852586 KPIESFNEY 9 Unmodified _KPIESFNEY_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2 ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7744750976562 2 563.774396 1125.53424 1.0017 0.00056476 -0.75755 -0.00042709 0.2442 0.00013767 563.7737844522031 42.361 0.46152 37.676 37.44 37.902 -4.6846 88 30 4 0 0 0 0.0090524 2 25557 25557;25687 85.642 33.373 1 67806000 27954 2508;1418 18697 19062 32931;32932 32931 -0.02350571001852586 KPIESFNEY 9 Unmodified _KPIESFNEY_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000107651|ENST00000369075|SEC23IP;ENSG00000085788|ENST00000397166|DDHD2 ENSG00000107651|ENST00000369075|SEC23IP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.774396 1125.53424 0.15987 9.0128E-05 0.059607 3.3605E-05 0.21947 0.00012373 563.7741208286457 36.995 0.32209 37.016 36.767 37.089 0.021545 -0.10371 1.7571E-05 NaN 43.772 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1719800 27955 2508;1418 18697 19062 -0.02350571001852586 KPIFIDGDY 9 Unmodified _KPIFIDGDY_ 0 0 0 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 nc|ENSG00000249948|Q9H227|GBA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2748413085938 2 534.274032 1066.53351 0.53998 0.0002885 0.74513 0.0003981 1.2851 0.0006866 534.2739091893926 62.163 0.63931 55.987 55.723 56.362 -6.1757 76 35 3 0 0 0 0.32871 1 40043 40043 15.847 0 1 48762000 27956 16579 18698 19063 32933 32933 0.0029063434908493946 KPIFSKIVSL 10 Unmodified _KPIFSKIVSL_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.9095764160156 3 377.909387 1130.70633 0.77661 0.00029349 0.48098 0.00018177 1.2576 0.00047525 377.9093160350261 57.689 0.18121 57.623 57.554 57.735 -0.066036 12 8 2 0 0 0 0.57893 1 31427 31427 7.4771 4.9786 1 1106900 27957 4251 18699 19064 32934 32934 0.1462062547630012 KPIFTDESY 9 Unmodified _KPIFTDESY_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2701416015625 2 550.268947 1098.52334 NaN NaN NaN NaN NaN NaN NaN 40.035 1 40.035 39.535 40.535 0 0 0 0 0.15231 1 21497 21497 36.506 12.486 1 27958 8147 18700 19065 32935 32935 -0.0219797337615546 KPIILRAL 8 Unmodified _KPIILRAL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.3241271972656 2 462.323663 922.632772 0.53774 0.00024861 0.65465 0.00030266 1.1924 0.00055127 462.3239131000062 45.981 0.21988 45.953 45.844 46.064 -0.028011 18 9 3 0 0 0 0.58902 1 24733 24733 26.884 5.137 1 1633800 27959 1675 18701 19066 32936 32936 0.16836121824496786 KPIIQKQKI 9 Unmodified _KPIIQKQKI_ 0 0 0 REV__ENSG00000099331|ENST00000682292|MYO9B REV__ENSG00000099331|ENST00000682292|MYO9B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.7511596679688 2 548.366059 1094.71756 0.82962 0.00045494 -0.060289 -3.306E-05 0.76933 0.00042188 548.3659205341501 39.187 0.41549 34.736 34.582 34.997 -4.4509 61 25 3 0 0 0 0.20207 1 23164 23164 7.2892 1.0834 1 28099000 + 27960 17974 18702 19067 32937 32937 0.17399447570460325 KPIKNRSI 8 Unmodified _KPIKNRSI_ 0 0 0 nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2 nc|ENSG00000131831|Q9Y5P3-2|RAI2 nc|ENSG00000131831|Q9Y5P3-2|RAI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3058776855469 2 478.306001 954.597449 0.73903 0.00035348 0.30225 0.00014457 1.0413 0.00049805 478.30616667072206 18.305 0.24475 15.684 15.548 15.793 -2.6215 41 18 3 0 0 0 0.63706 1 9687 9687 22.736 3.4793 1 7987200 27961 4354 18703 19068 32938 32938 0.11833459296701676 KPILSTRSL 9 Unmodified _KPILSTRSL_ 0 0 0 nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF nc|ENSG00000183527|O95456-2|PSMG1 nc|ENSG00000183527|O95456-2|PSMG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.8182983398438 2 507.818941 1013.62333 NaN NaN NaN NaN NaN NaN NaN 32.314 1 32.344 31.844 32.844 0.029743 0 0 0 0.65645 1 16963 16963 10.8 0.72558 1 27962 9156 18704 19069 32939 32939 0.1170630874833023 KPINFSVIL 9 Unmodified _KPINFSVIL_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8193969726562 2 515.81841 1029.62227 0.39235 0.00020238 0.72454 0.00037373 1.1169 0.00057611 515.8190145266746 74.829 0.76698 74.875 74.281 75.048 0.045967 50 25 4 0 0 0 0.07087 1 41238 41238 39.95 10.868 1 11045000 27963 9710 18705 19070 32940 32940 0.10864094379417111 KPINFSVIL 9 Unmodified _KPINFSVIL_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8197021484375 2 515.81841 1029.62227 1.0725 0.00055323 0.47755 0.00024633 1.5501 0.00079956 515.8186822433727 95.192 0.60522 89.017 88.625 89.23 -6.1757 78 33 3 0 0 0 0.011968 2 63032 62915;63032 74.929 13.572 1 24736000 27964 9710 18705 19070 32941;32942 32942 0.10864094379417111 KPINVRVTTM 10 Oxidation (M) _KPINVRVTTM(Oxidation (M))_ KPINVRVTTM(1) KPINVRVTTM(67) 0 0 1 ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;nc|ENSG00000137710|P35241-3|RDX ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8348999023438 2 587.834265 1173.65398 0.44153 0.00025954 0.60106 0.00035332 1.0426 0.00061287 587.8347507701254 26.929 0.45724 23.893 23.665 24.122 -3.0365 56 23 3 0 0 0 0.031932 2 14808 14808;14917 67.081 28.466 1 31286000 27965 1622 18706 19071 32943;32944 32943 273 0.07409719071051768 KPINVRVTTM 10 Unmodified _KPINVRVTTM_ 0 0 0 ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;nc|ENSG00000137710|P35241-3|RDX ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8370361328125 2 579.836808 1157.65906 0.48309 0.00028011 -0.17187 -9.9658E-05 0.31122 0.00018046 579.8367848118171 36.487 0.44197 32.294 32.037 32.479 -4.1928 49 27 2 0 0 0 0.052718 2 21352 21233;21352 57.249 27.409 1 50438000 27966 1622 18706 19072 32945;32946 32946 0.08654022933660599 KPIQRTILM 9 Unmodified _KPIQRTILM_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3364868164062 2 550.336444 1098.65834 0.60308 0.0003319 -0.28837 -0.0001587 0.3147 0.00017319 550.3361256219389 38.903 0.36121 34.452 34.298 34.659 -4.4509 36 22 2 0 0 0 0.024189 1 23008 23008 59.368 4.5948 1 9323800 27967 7651 18707 19073 32947 32947 0.11295228284620862 KPIRRRPRAYV 11 Unmodified _KPIRRRPRAYV_ 0 0 0 TMEM200A|p.D47Y|1|0.47|ENSG00000164484|chr6:130440561-130440561|G/T|missense_variant TMEM200A|p.D47Y|1|0.47|ENSG00000164484|chr6:130440561-130440561|G/T|missense_variant TMEM200A|p.D47Y|1|0.47|ENSG00000164484|chr6:130440561-130440561|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 706.4407348632812 2 706.441486 1410.86842 1.2594 0.00088971 -0.95915 -0.00067759 0.30027 0.00021212 706.9427690579558 104.57 0.10023 98.391 98.338 98.438 -6.1757 13 5 3 0 0 0 0.74203 1 70021 70021 0.30703 0 1 12695000 27968 30194 18708 19074 32948 32948 0.1794202700182268 KPISRELRREL 11 Unmodified _KPISRELRREL_ 0 0 0 nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF nc|ENSG00000160201|Q01081-4|U2AF1 nc|ENSG00000160201|Q01081-4|U2AF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2841491699219 3 466.284287 1395.83103 0.10009 4.667E-05 0.30036 0.00014005 0.40045 0.00018672 466.6183669471015 19.539 0.18407 19.547 19.466 19.65 0.0078487 23 11 3 0 0 0 0.72478 1 9933 9933 1.9275 0.71267 1 1262600 27969 6697 18709 19075 32949 32949 0.14894890945538464 KPISRELRREL 11 Unmodified _KPISRELRREL_ 0 0 0 nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF nc|ENSG00000160201|Q01081-4|U2AF1 nc|ENSG00000160201|Q01081-4|U2AF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 466.284287 1395.83103 0.10009 4.667E-05 0.30036 0.00014005 0.40045 0.00018672 466.6183669471015 19.539 0.18407 19.547 19.466 19.65 0.0078487 0 0 NaN 1.9275 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1262600 27970 6697 18709 19075 0.14894890945538464 KPITNTVFF 9 Unmodified _KPITNTVFF_ 0 0 0 REV__nc|ENSG00000262628|P47884|OR1D4 REV__nc|ENSG00000262628|P47884|OR1D4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.202880859375 3 356.20257 1065.58588 -0.28531 -0.00010163 1.3712 0.00048843 1.0859 0.0003868 356.20314087035484 33.988 0.6315 33.796 33.498 34.13 -0.19131 59 24 3 0 0 0 0.38785 1 17706 17706 12.873 2.722 1 4024700 + 27971 23402 18710 19076 32950 32950 0.055712174827021954 KPITTGGVTY 10 Unmodified _KPITTGGVTY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7869873046875 2 518.787307 1035.56006 -0.17943 -9.3087E-05 0.46874 0.00024318 0.28931 0.00015009 518.787523650199 30.81 0.3057 30.81 30.587 30.892 0 51 14 5 0 0 0 0.035244 1 15962 15962 65.474 29.347 1 63161000 27972 3147 18711 19077 32951 32951 0.043703232404368464 KPITTGGVTY 10 Unmodified _KPITTGGVTY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7876586914062 2 518.787307 1035.56006 0.36537 0.00018955 0.51855 0.00026902 0.88392 0.00045857 518.7874949051342 30.798 0.47416 30.695 30.365 30.839 -0.10269 46 18 4 0 0 0 0.087164 1 15958 15958 49.527 15.126 1 16640000 27973 3147 18711 19077 32952 32952 0.043703232404368464 KPITTGGVTY 10 Unmodified _KPITTGGVTY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7877197265625 2 518.787307 1035.56006 -0.082475 -4.2787E-05 1.0175 0.00052785 0.93499 0.00048506 518.7877538199094 30.572 0.32349 30.602 30.413 30.737 0.030106 32 14 3 0 0 0 0.13008 1 15986 15986 42.312 11.676 1 4282500 27974 3147 18711 19077 32953 32953 0.043703232404368464 KPITTGGVTY 10 Unmodified _KPITTGGVTY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.787841796875 2 518.787307 1035.56006 0.86798 0.0004503 0.79297 0.00041138 1.661 0.00086168 518.7876580658228 35.164 0.46401 31.069 30.869 31.333 -4.0951 98 27 5 0 0 0 0.035244 3 20405 20277;20405;20537 65.474 23.634 1 483070000 27975 3147 18711 19077 32954;32955;32956 32955 0.043703232404368464 KPIVKKYC 8 Unmodified _KPIVKKYC_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.7962341308594 2 489.793881 977.573209 1.4721 0.000721 2.9834 0.0014613 4.4555 0.0021823 489.7952489060055 46.942 0.20247 46.909 46.774 46.976 -0.033417 12 9 2 0 0 0 0.6895 1 25268 25268 18.135 1.9859 1 1807400 27976 3531;7361 18712 19078 32957 32957 0.08352482818804674 KPIVKKYC 8 Unmodified _KPIVKKYC_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.793881 977.573209 0.83993 0.00041139 3.4039 0.0016672 4.2438 0.0020786 489.7954664246969 47.204 0.2534 46.852 46.685 46.938 -0.3526 -0.028416 0.00015804 NaN 18.135 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3086900 27977 3531;7361 18712 19078 0.08352482818804674 KPKAPPPSL 9 Unmodified _KPKAPPPSL_ 0 0 0 nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7892761230469 2 467.789653 933.564752 -0.065546 -3.0662E-05 -0.32585 -0.00015243 -0.39139 -0.00018309 467.78944185270944 19.678 0.49927 19.678 19.482 19.981 0 115 72 2 0 0 0 0.10247 3 9875 9773;9875;10023 32.786 13.529 1 1222200 27978 1429 18713 19079 32958;32959;32960 32959 0.09531252173849225 KPKAPPPSL 9 Unmodified _KPKAPPPSL_ 0 0 0 nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7894592285156 2 467.789653 933.564752 -0.51811 -0.00024237 0.21811 0.00010203 -0.3 -0.00014034 467.78967176409066 19.564 0.61411 19.593 19.36 19.974 0.028355 84 51 2 0 0 0 0.10247 3 9867 9769;9867;9994 32.786 18.88 1 1012100 27979 1429 18713 19079 32961;32962;32963 32962 0.09531252173849225 KPKAPPPSL 9 Unmodified _KPKAPPPSL_ 0 0 0 nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2899780273438 2 467.789653 933.564752 0.063459 2.9686E-05 0.8183 0.00038279 0.88176 0.00041248 467.7900697475087 19.63 0.5009 19.638 19.414 19.915 0.0078487 37 27 2 0 0 0 0.28023 2 9967 9967;10064 18.146 8.0724 1 507320 27980 1429 18713 19079 32964;32965 32964 0.09531252173849225 KPKAPPPSL 9 Unmodified _KPKAPPPSL_ 0 0 0 nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 nc|ENSG00000086065|Q9NZZ3-2|CHMP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7903747558594 2 467.789653 933.564752 1.1301 0.00052866 -0.13615 -6.3689E-05 0.99397 0.00046497 467.78959576364434 21.455 1.0398 18.72 18.373 19.412 -2.7348 169 71 3 0 0 0 0.0024112 5 11676 11343;11453;11568;11676;11782 129.77 64.537 1 17170000 27981 1429 18713 19079 32966;32967;32968;32969;32970 32969 0.09531252173849225 KPKDPLKISL 10 Unmodified _KPKDPLKISL_ 0 0 0 nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5790710449219 3 380.244658 1137.71214 0.15732 5.9819E-05 0.1295 4.9243E-05 0.28682 0.00010906 380.2448337271372 39.935 0.24699 39.638 39.512 39.759 -0.29716 26 11 3 0 0 0 0.35999 1 21085 21085 23.964 15.52 1 2244500 27982 1600 18714 19080 32971 32971 0.14879723987974103 KPKDPLKISL 10 Unmodified _KPKDPLKISL_ 0 0 0 nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2449035644531 3 380.244658 1137.71214 0.2915 0.00011084 0.43336 0.00016478 0.72486 0.00027562 380.24468331552 39.553 0.32751 39.564 39.408 39.736 0.011452 36 15 3 0 0 0 0.2125 1 21094 21094 32.616 10.817 1 6152000 27983 1600 18714 19080 32972 32972 0.14879723987974103 KPKDPLKISL 10 Unmodified _KPKDPLKISL_ 0 0 0 nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.86376953125 2 569.863349 1137.71214 0.36644 0.00020882 0.32525 0.00018535 0.69169 0.00039417 569.8638098362233 39.549 0.16498 39.561 39.509 39.674 0.011456 13 7 2 0 0 0 0.1605 1 21099 21099 24.882 17.592 1 1076100 27984 1600 18714 19080 32973 32973 0.14879723987974103 KPKDPLKISL 10 Unmodified _KPKDPLKISL_ 0 0 0 nc|ENSG00000092020|Q969Q6-2|PPP2R3C;ENSG00000092020|ENST00000261475|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C nc|ENSG00000092020|Q969Q6-2|PPP2R3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2456359863281 3 380.244658 1137.71214 1.1476 0.00043636 0.40649 0.00015456 1.5541 0.00059093 380.24462311304194 43.549 0.43134 38.784 38.618 39.05 -4.7648 61 26 3 0 0 0 0.5012 1 26451 26451 16.275 11.227 1 31490000 27985 1600 18714 19080 32974 32974 0.14879723987974103 KPKEFTMNNYF 11 Unmodified _KPKEFTMNNYF_ 0 0 0 ENSG00000153933|ENST00000284061|DGKE ENSG00000153933|ENST00000284061|DGKE ENSG00000153933|ENST00000284061|DGKE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.5643615722656 3 473.56395 1417.67002 -0.1445 -6.8429E-05 1.0434 0.00049411 0.89888 0.00042568 473.56451789635895 29.389 0.18964 29.389 29.262 29.451 0 21 8 3 0 0 0 0.71259 1 15210 15210 3.0723 0 1 1960100 27986 6283 18715 19081 32975 32975 -0.02210619482684706 KPKFILSVL 9 Unmodified _KPKFILSVL_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.844970703125 2 522.844428 1043.6743 0.66366 0.00034699 0.87179 0.00045581 1.5355 0.0008028 522.8448624152885 64.589 0.33461 64.579 64.415 64.749 -0.010536 39 16 3 0 0 0 0.044011 1 35345 35345 47.749 1.7277 1 13398000 27987 6622 18716 19082 32976 32976 0.15421257793195764 KPKGPGLL 8 Unmodified _KPKGPGLL_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.5255737304688 1 809.52435 808.517074 1.8885 0.0015288 0.37152 0.00030075 2.26 0.0018296 809.5245352611224 108.73 2.8226 102.55 100.95 103.77 -6.1757 995 538 2 0 0 0 0.80676 1 73037 73037 2.5775 1.7838 1 15613000 + 27988 19555 18717 19083 32977 32977 0.1051559797366508 KPKIATANL 9 Unmodified _KPKIATANL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.3003845214844 2 478.300384 954.586216 -0.17541 -8.3899E-05 0.79318 0.00037938 0.61777 0.00029548 478.3005813490448 24.088 0.21542 24.088 23.975 24.19 0 17 10 2 0 0 0 0.15471 1 12291 12291 27.629 2.2295 1 1096300 27989 3468 18718 19084 32978 32978 0.10710637202555517 KPKIATANL 9 Unmodified _KPKIATANL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.3009033203125 2 478.300384 954.586216 NaN NaN NaN NaN NaN NaN NaN 24.3 1 24.299 23.799 24.799 -0.0016766 0 0 0 0.059498 1 12415 12415 53.833 17.789 1 27990 3468 18718 19084 32979 32979 0.10710637202555517 KPKIATANL 9 Unmodified _KPKIATANL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3003845214844 2 478.300384 954.586216 0.58511 0.00027986 -0.23843 -0.00011404 0.34668 0.00016582 478.3003044625228 27.015 0.40537 23.978 23.755 24.161 -3.0365 50 20 3 0 0 0 0.010301 2 14985 14867;14985 79.596 31.25 1 35677000 27991 3468 18718 19084 32980;32981 32981 0.10710637202555517 KPKKELIK 8 Unmodified _KPKKELIK_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MSMS AL20221201_MKP_PDAC_01 4 492.335205078125 2 492.334227 982.653902 NaN NaN NaN NaN NaN NaN NaN 22.196 1 19.461 18.961 19.961 -2.7348 0 0 0 0.95899 1 11928 11928 8.7454 0.58988 1 27992 4347 18719 19085 32982 32982 0.1618808713336648 KPKKGGGISF 10 Unmodified _KPKKGGGISF_ 0 0 0 ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8065185546875 2 509.805834 1017.59712 0.87806 0.00044764 -0.36547 -0.00018632 0.51259 0.00026132 509.80570360389726 19.601 0.28458 16.944 16.835 17.12 -2.6564 40 23 2 0 0 0 0.06987 2 10369 10369;10476 53.404 11.564 1 6198200 27993 2587;13769 18720 19086 32983;32984 32983 0.08902039576855714 KPKLARATV 9 Unmodified _KPKLARATV_ 0 0 0 ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3221130371094 2 492.321651 982.62875 1.5596 0.00076784 -1.5681 -0.00077199 -0.0084198 -4.1453E-06 492.32142681318487 103.35 0.16322 97.179 97.119 97.282 -6.1757 71 33 3 0 0 0 0.59218 1 69288 69288 1.8442 0 1 17807000 27994 1090 18721 19087 32985 32985 0.13674032330789032 KPKLIAQLER 10 Unmodified _KPKLIAQLER_ 0 0 0 ENSG00000181666|ENST00000392153|ZNF875;nc|ENSG00000181666|P10072|ZNF875 ENSG00000181666|ENST00000392153|ZNF875 ENSG00000181666|ENST00000392153|ZNF875 MSMS AL20221201_MKP_PDAC_01 4 598.3810424804688 2 598.379697 1194.74484 NaN NaN NaN NaN NaN NaN NaN 104.15 1 97.973 97.473 98.473 -6.1757 0 0 0 0.99248 1 69768 69768 1.4819 0 1 27995 8987 18722 19088 32986 32986 0.1552593111080114 KPKLKRRHE 9 Unmodified _KPKLKRRHE_ 0 0 0 REV__ENSG00000151687|ENST00000684021|ANKAR REV__ENSG00000151687|ENST00000684021|ANKAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3759155273438 2 596.375281 1190.73601 1.1406 0.00068024 1.5647 0.00093313 2.7053 0.0016134 596.3758632845892 104.64 0.14007 98.464 98.398 98.538 -6.1757 15 7 3 0 0 0 0.61381 1 70056 70056 0.52476 0 1 35320000 + 27996 21081 18723 19089 32987 32987 0.1482700226504221 KPKMNYEKL 9 Unmodified _KPKMNYEKL_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1 ENSG00000157557|ENST00000360938|ETS2;nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.550048828125 3 384.214482 1149.62162 1.6217 0.00062307 -0.88215 -0.00033894 0.73951 0.00028413 384.2140528910414 21.485 0.30622 18.751 18.629 18.935 -2.7348 36 27 2 0 0 0 0.17124 2 11537 11537;11562 25.997 10.826 1 2296100 27997 4656;6528 18724 19090 32988;32989 32988 0.05278931668067344 KPKNAIHTF 9 Unmodified _KPKNAIHTF_ 0 0 0 ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.1877746582031 3 352.538064 1054.59236 1.2478 0.00043991 0.83302 0.00029367 2.0808 0.00073358 352.5382797445299 17.865 0.23115 15.279 15.161 15.392 -2.5866 39 19 3 0 0 0 0.21021 1 9385 9385 7.609 0.88579 1 2145100 27998 3594 18725 19091 32990 32990 0.0672515543406007 KPKNPEFTSGL 11 Unmodified _KPKNPEFTSGL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3302612304688 2 609.32987 1216.64519 0.082494 5.0266E-05 0.37475 0.00022834 0.45724 0.00027861 609.3301410286825 31.279 0.18434 31.279 31.194 31.379 0 17 8 3 0 0 0 0.55668 1 16300 16300 21.59 4.4773 1 1288400 27999 3480 18726 19092 32991 32991 0.04553068706218255 KPKNPEFTSGL 11 Unmodified _KPKNPEFTSGL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3306274414062 2 609.32987 1216.64519 0.30014 0.00018288 1.0185 0.00062063 1.3187 0.00080351 609.330662831065 31.294 0.18571 31.191 31.053 31.238 -0.10269 11 6 2 0 0 0 0.36533 1 16278 16278 28.234 11.121 1 2028500 28000 3480 18726 19092 32992 32992 0.04553068706218255 KPKNPEFTSGL 11 Unmodified _KPKNPEFTSGL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.330322265625 2 609.32987 1216.64519 0.63207 0.00038514 -0.022438 -1.3672E-05 0.60963 0.00037147 609.3296624087474 34.523 0.22979 30.428 30.319 30.549 -4.0951 20 13 2 0 0 0 1.1285E-08 1 19897 19897 118.21 77.97 1 9147200 28001 3480 18726 19092 32993 32993 0.04553068706218255 KPKPKPKVGF 10 Unmodified _KPKPKPKVGF_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.2452087402344 3 375.90961 1124.707 0.68075 0.0002559 0.70167 0.00026376 1.3824 0.00051967 375.90978977699024 15.606 0.10349 13.078 13.006 13.109 -2.5273 32 25 2 0 0 0 0.23279 1 7984 7984 12.175 8.5877 1 2150900 28002 10769 18727 19093 32994 32994 0.14963464916036173 KPKRGRKKH 9 Unmodified _KPKRGRKKH_ 0 0 0 REV__ENSG00000146247|ENST00000275034|PHIP REV__ENSG00000146247|ENST00000275034|PHIP MSMS AL20221201_MKP_PDAC_01 4 567.8717651367188 2 567.870166 1133.72578 NaN NaN NaN NaN NaN NaN NaN 105.82 1 99.641 99.141 100.14 -6.1757 0 0 0 0.85798 1 70873 70873 0.52476 0 1 + 28003 20820 18728 19094 32995 32995 0.16426439330462017 KPKRGRKKH 9 Unmodified _KPKRGRKKH_ 0 0 0 REV__ENSG00000146247|ENST00000275034|PHIP REV__ENSG00000146247|ENST00000275034|PHIP MSMS AL20221201_MKP_PDAC_01 4 567.8717041015625 2 567.870166 1133.72578 NaN NaN NaN NaN NaN NaN NaN 106 1 99.825 99.325 100.33 -6.1757 0 0 0 0.85798 1 70981 70981 0.52476 0 1 + 28004 20820 18728 19094 32996 32996 0.16426439330462017 KPKTTNIEL 9 Unmodified _KPKTTNIEL_ 0 0 0 nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.3085327148438 2 522.308406 1042.60226 -0.23607 -0.0001233 0.83488 0.00043607 0.59882 0.00031277 522.308763645749 26.884 0.23145 26.884 26.761 26.992 0 25 10 3 0 0 0 0.028475 1 13825 13825 56.177 4.5472 1 3756000 28005 3288 18729 19095 32997 32997 0.0826629864880033 KPKTTNIEL 9 Unmodified _KPKTTNIEL_ 0 0 0 nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 MSMS AL20221201_MKP_PDAC_01 4 522.3079833984375 2 522.308406 1042.60226 NaN NaN NaN NaN NaN NaN NaN 29.261 1 25.959 25.459 26.459 -3.3016 0 0 0 0.0067126 1 16419 16419 99.755 21.027 1 28006 3288 18729 19095 32998 32998 0.0826629864880033 KPKVLKIE 8 Unmodified _KPKVLKIE_ 0 0 0 nc|ENSG00000138336|Q8NFU7-4|TET1 nc|ENSG00000138336|Q8NFU7-4|TET1 nc|ENSG00000138336|Q8NFU7-4|TET1 MSMS AL20221201_MKP_PDAC_01 4 477.8224792480469 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 106.43 1 100.26 99.757 100.76 -6.1757 0 0 0 0.97444 1 71243 71243 2.3027 0 1 28007 16225 18730 19096 32999 32999 0.14868398242037983 KPKVPPKART 10 Unmodified _KPKVPPKART_ 0 0 0 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.578125 3 374.576631 1120.70806 NaN NaN NaN NaN NaN NaN NaN 43.049 1 43.049 42.549 43.549 0 0 0 0 0.99897 1 23356 23356 0.77653 0.078866 1 + 28008 20979 18731 19097 33000 33000 0.15253679284933241 KPLAAALGL 9 Unmodified _KPLAAALGL_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2790832519531 2 427.278921 852.543289 1.0575 0.00045186 -0.16088 -6.8742E-05 0.89664 0.00038312 427.2788692865486 64.946 0.39426 58.77 58.574 58.968 -6.1757 45 21 3 0 0 0 0.047196 1 42032 42032 46.021 4.1813 1 14671000 28009 7756 18732 19098 33001 33001 0.11111867145120868 KPLAALVTY 9 Unmodified _KPLAALVTY_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000480125.1_1_X:24766454-24793337:+|nuORF ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2980041503906 2 488.29731 974.580068 1.2839 0.00062693 1.7437 0.00085143 3.0276 0.0014784 488.29831350673936 59.068 0.37479 52.993 52.835 53.21 -6.0745 41 20 3 0 0 0 0.018301 1 37981 37981 65.235 32.93 1 36236000 28010 1995 18733 19099 33002 33002 0.09176118971049618 KPLAALVTY 9 Unmodified _KPLAALVTY_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000480125.1_1_X:24766454-24793337:+|nuORF ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.29731 974.580068 0.48267 0.00023569 0.4527 0.00022105 0.93538 0.00045674 488.2974173129196 53.074 0.25436 53.01 52.882 53.137 -0.063419 0.0082801 -0.00029635 NaN 65.235 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5291400 28011 1995 18733 19099 0.09176118971049618 KPLASTTQY 9 Unmodified _KPLASTTQY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MSMS AL20221201_MKP_PDAC_01 4 504.7694396972656 2 504.771657 1007.52876 NaN NaN NaN NaN NaN NaN NaN 26.143 1 23.192 22.692 23.692 -2.9511 0 0 0 0.27852 1 14372 14372 26.268 4.5215 1 28012 5021 18734 19100 33003 33003 0.02529750206326753 KPLDNASKL 9 Unmodified _KPLDNASKL_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2886352539062 2 493.287474 984.560395 0.22352 0.00011026 -1.0187 -0.00050252 -0.7952 -0.00039226 493.28804987995454 23.985 0.30184 21.157 20.983 21.284 -2.8273 30 17 2 0 0 0 0.044296 1 13083 13083 47.594 16.958 1 3783400 28013 3211 18735 19101 33004 33004 0.06749742960278127 KPLDRKLIL 9 Unmodified _KPLDRKLIL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3667602539062 2 548.366059 1094.71756 -0.009922 -5.4409E-06 -0.68005 -0.00037292 -0.68997 -0.00037836 548.3657973709812 35.245 0.29347 35.272 35.122 35.415 0.027405 19 13 2 0 0 0 0.01958 1 18596 18596 63.961 10.128 1 4393400 28014 7097 18736 19102 33005 33005 0.17399447570483062 KPLDRKLIL 9 Unmodified _KPLDRKLIL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.9126281738281 3 365.913131 1094.71756 1.3002 0.00047578 -0.72003 -0.00026347 0.58021 0.00021231 365.9127769592872 76.277 1.1395 70.101 69.48 70.62 -6.1757 151 61 3 0 0 0 0.047788 2 50106 49615;50106 46.022 13.818 1 41088000 28015 7097 18736 19102 33006;33007 33007 0.17399447570483062 KPLDRKLIL 9 Unmodified _KPLDRKLIL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS AL20221201_MKP_PDAC_01 4 548.3652954101562 2 548.366059 1094.71756 NaN NaN NaN NaN NaN NaN NaN 76.256 1 70.08 69.58 70.58 -6.1757 0 0 0 0.15231 1 49881 49881 36.506 5.2379 1 28016 7097 18736 19102 33008 33008 0.17399447570483062 KPLEKETKD 9 Unmodified _KPLEKETKD_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8704833984375 3 363.20464 1086.59209 0.25001 9.0803E-05 0.2269 8.2411E-05 0.47691 0.00017321 363.2046952685907 39.646 0.46041 39.653 39.524 39.984 0.0069733 27 21 2 0 0 0 0.21835 1 21117 21117 2.2828 0.69049 1 1394800 + 28017 24192 18737 19103 33009 33009 0.05225690923566617 KPLEKPLKL 9 Unmodified _KPLEKPLKL_ 0 0 0 ENST00000487688.1_1_5:889867-892539:-|nuORF;ENST00000466684.5_1_5:889867-892639:-|nuORF;ENST00000495265.5_1_5:889867-892820:-|nuORF;ENST00000483173.5_3_5:889166-892639:-|nuORF;ENSG00000028310|ENST00000467963|BRD9 ENST00000487688.1_1_5:889867-892539:-|nuORF ENST00000487688.1_1_5:889867-892539:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.9060363769531 3 355.905865 1064.69577 1.5454 0.00055003 0.20518 7.3026E-05 1.7506 0.00062306 355.9057054266227 30.281 0.32424 26.784 26.612 26.936 -3.497 20 15 2 0 0 0 0.070983 1 17132 17132 39.923 9.2195 1 10721000 28018 573 18738 19104 33010 33010 0.1660064282186795 KPLFLLIHTKI 11 Unmodified _KPLFLLIHTKI_ 0 0 0 REV__ENSG00000185624|ENST00000331483|P4HB REV__ENSG00000185624|ENST00000331483|P4HB MSMS AL20221201_MKP_PDAC_01 4 441.9567260742188 3 441.623469 1321.84858 NaN NaN NaN NaN NaN NaN NaN 90.587 1 84.411 83.911 84.911 -6.1757 0 0 0 0.8789 1 59844 59844 8.2864 2.0521 1 + 28019 23514 18739 19105 33011 33011 0.20052838218498437 KPLFRALR 8 Unmodified _KPLFRALR_ 0 0 0 REV__ENSG00000074855|ENST00000159087|ANO8 REV__ENSG00000074855|ENST00000159087|ANO8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3262023925781 2 500.824361 999.634169 1.701 0.00085192 0.0024376 1.2208E-06 1.7035 0.00085314 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.80992 2 72294 72294;72740 0.69038 0 1 7573500 + 28020 17560 18740 19106 33012;33013 33012 0.13433755913263212 KPLGIKTAL 9 Unmodified _KPLGIKTAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.8132019042969 2 470.813128 939.611703 -0.31542 -0.0001485 0.28126 0.00013242 -0.034158 -1.6082E-05 470.8132382350744 34.55 0.34954 34.55 34.384 34.733 0 31 17 2 0 0 0 0.0082981 1 18170 18170 96.936 45.306 1 4901800 28021 8367 18741 19107 33014 33014 0.13948111724982937 KPLGIKTAL 9 Unmodified _KPLGIKTAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.8130493164062 2 470.813128 939.611703 -0.2413 -0.00011361 0.069702 3.2817E-05 -0.1716 -8.0792E-05 470.81309632857676 34.646 0.27486 34.455 34.331 34.606 -0.19131 32 12 3 0 0 0 0.0093064 1 18088 18088 83.429 33.496 1 10491000 28022 8367 18741 19107 33015 33015 0.13948111724982937 KPLGIKTAL 9 Unmodified _KPLGIKTAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.8135070800781 2 470.813128 939.611703 NaN NaN NaN NaN NaN NaN NaN 34.805 1 34.614 34.114 35.114 -0.19131 0 0 0 0.25233 1 18203 18203 27.629 7.1752 1 28023 8367 18741 19107 33016 33016 0.13948111724982937 KPLGIKTAL 9 Unmodified _KPLGIKTAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.8131408691406 2 470.813128 939.611703 0.0073609 3.4656E-06 -0.0085439 -4.0226E-06 -0.001183 -5.5698E-07 470.8131011098355 34.398 0.50455 34.425 34.163 34.668 0.027401 57 23 3 0 0 0 0.010301 2 18209 18097;18209 79.596 45.195 1 21793000 28024 8367 18741 19107 33017;33018 33018 0.13948111724982937 KPLGIKTAL 9 Unmodified _KPLGIKTAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.8133850097656 2 470.813128 939.611703 0.27384 0.00012893 0.40657 0.00019142 0.68041 0.00032035 470.8133054093594 38.638 0.6255 34.269 33.98 34.605 -4.3689 111 39 4 0 0 0 0.0088668 3 22803 22678;22803;22938 87.258 37.325 1 194080000 28025 8367 18741 19107 33019;33020;33021 33020 0.13948111724982937 KPLGLKGP 8 Unmodified _KPLGLKGP_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;nc|ENSG00000188522|A6ND36-2|FAM83G;ENST00000399096.2_1_17:18880803-18882234:-|nuORF ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2658081054688 2 405.265813 808.517074 -0.096775 -3.922E-05 0.11406 4.6223E-05 0.017281 7.0035E-06 405.2658839384021 34.404 0.29624 34.431 34.265 34.561 0.027401 24 13 2 0 0 0 0.52622 1 18094 18094 32.305 5.9642 1 2266300 28026 9665 18742 19108 33022 33022 0.1051559797366508 KPLGLKGP 8 Unmodified _KPLGLKGP_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;nc|ENSG00000188522|A6ND36-2|FAM83G;ENST00000399096.2_1_17:18880803-18882234:-|nuORF ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2661437988281 2 405.265813 808.517074 0.4647 0.00018833 0.6988 0.0002832 1.1635 0.00047153 405.2660218649955 38.642 0.54235 34.274 34.012 34.554 -4.3689 73 34 3 0 0 0 0.30525 3 22859 22718;22859;23002 54.774 11.919 1 43614000 28027 9665 18742 19108 33023;33024;33025 33024 0.1051559797366508 KPLGLKGP 8 Unmodified _KPLGLKGP_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G;nc|ENSG00000188522|A6ND36-2|FAM83G;ENST00000399096.2_1_17:18880803-18882234:-|nuORF ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 405.265813 808.517074 -0.66259 -0.00026853 0.90231 0.00036568 0.23972 9.715E-05 405.2661453073483 34.526 0.21436 34.526 34.442 34.656 0 0.11612 0.00024531 NaN 54.774 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1005200 28028 9665 18742 19108 0.1051559797366508 KPLGPTAAF 9 Unmodified _KPLGPTAAF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2613525390625 2 451.260728 900.506903 0.6022 0.00027175 0.24823 0.00011202 0.85043 0.00038377 451.2609551418941 46.421 0.30779 41.34 41.13 41.437 -5.0805 32 23 2 0 0 0 0.06294 1 28595 28595 41.84 17.166 1 20072000 28029 16461 18743 19109 33026 33026 0.052669902484126396 KPLGPTAAF 9 Unmodified _KPLGPTAAF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.260728 900.506903 -0.42633 -0.00019239 1.708 0.00077074 1.2816 0.00057835 451.2613870123358 41.653 0.19184 41.346 41.283 41.475 -0.30682 0.0030457 0.0010872 NaN 41.84 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2973400 28030 16461 18743 19109 0.052669902484126396 KPLHYTTVL 9 Unmodified _KPLHYTTVL_ 0 0 0 ENST00000531655.1_1_11:4496080-4496773:+|nuORF;ENSG00000196778|ENST00000641528|OR52K1 ENST00000531655.1_1_11:4496080-4496773:+|nuORF ENST00000531655.1_1_11:4496080-4496773:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8787536621094 3 357.878087 1070.61243 -0.08955 -3.2048E-05 0.63754 0.00022816 0.54799 0.00019611 357.8783886485558 33.191 0.29503 33.22 33.066 33.361 0.028934 33 12 4 0 0 0 0.43463 1 17436 17436 10.8 0 1 11722000 28031 9869 18744 19110 33027 33027 0.07994906374028687 KPLKPGYG 8 Unmodified _KPLKPGYG_ 0 0 0 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 ENSG00000262152|ENST00000573315|GREP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.2121276855469 2 430.255446 858.496338 1.6813 0.00072338 -0.88516 -0.00038084 0.79612 0.00034253 430.25498289397103 105.49 0.14613 99.312 99.229 99.375 -6.1757 33 25 2 0 0 0 8.7369 1 70698 70698 0.79363 0 1 9207800 28032 10846 18745 19111 33028 33028 0.06143007593993843 KPLKTRFYTHK 11 Unmodified _KPLKTRFYTHK_ 0 0 0 ENSG00000203872|ENST00000388923|C6orf163 ENSG00000203872|ENST00000388923|C6orf163 ENSG00000203872|ENST00000388923|C6orf163 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.6141662597656 3 473.613744 1417.8194 0.66422 0.00031458 -0.40617 -0.00019237 0.25806 0.00012222 473.61373347611675 52.644 0.24211 52.585 52.466 52.708 -0.058918 28 11 3 0 0 0 0.72131 1 28504 28504 2.2527 0.34635 1 4637100 28033 10229 18746 19112 33029 33029 0.12720693922210558 KPLLGHSRAL 10 Unmodified _KPLLGHSRAL_ 0 0 0 REV__ENSG00000124126|ENST00000371941|PREX1 REV__ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.5611877441406 3 364.560981 1090.66111 0.047533 1.7329E-05 0.27281 9.9458E-05 0.32035 0.00011679 364.56110801701465 20.212 0.16795 20.222 20.111 20.279 0.010553 19 8 3 0 0 0 0.62665 1 10318 10318 9.7643 2.6625 1 1204700 + 28034 19415 18747 19113 33030 33030 0.11940819733808894 KPLLGHSRAL 10 Unmodified _KPLLGHSRAL_ 0 0 0 REV__ENSG00000124126|ENST00000371941|PREX1 REV__ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5616455078125 3 364.560981 1090.66111 0.79606 0.00029021 -0.22133 -8.0687E-05 0.57473 0.00020953 364.56088378679107 23.235 0.29721 20.457 20.346 20.644 -2.7784 57 28 3 0 0 0 0.39689 1 12659 12659 21.799 1.3849 1 12221000 + 28035 19415 18747 19113 33031 33031 0.11940819733808894 KPLLQRHRL 9 Unmodified _KPLLQRHRL_ 0 0 0 ENSG00000183336|ENST00000330978|BOLA2;ENSG00000169627|ENST00000651894|BOLA2B ENSG00000183336|ENST00000330978|BOLA2 ENSG00000183336|ENST00000330978|BOLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.584716796875 3 387.584008 1159.73019 0.90968 0.00035258 0.836 0.00032402 1.7457 0.0006766 387.58426936273617 17.798 0.19265 15.212 15.144 15.336 -2.5866 33 18 2 0 0 0 0.34134 1 9339 9339 15.248 4.3495 1 3658600 28036 7894 18748 19114 33032 33032 0.15671903753354854 KPLPLKTAL 9 Unmodified _KPLPLKTAL_ 0 0 0 ENSG00000170802|ENST00000340553|FOXN2;nc|ENSG00000170802|P32314-2|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8291625976562 2 490.828778 979.643003 NaN NaN NaN NaN NaN NaN NaN 38.303 1 38.32 37.82 38.82 0.01704 0 0 0 0.3031 1 20362 20362 24.991 0.97039 1 28037 8025 18749 19115 33033 33033 0.1523668475906561 KPLSDPAPF 9 Unmodified _KPLSDPAPF_ 0 0 0 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.1881103515625 2 486.263468 970.512382 0.059326 2.8848E-05 0.15606 7.5887E-05 0.21539 0.00010473 486.2635723248639 43.68 0.11892 43.68 43.605 43.723 0 6 5 2 0 0 0 0.1685 1 23695 23695 26.268 11.43 1 7660400 28038 1919;16089 18750 19116 33034 33034 0.025946690402292916 KPLSDPAPF 9 Unmodified _KPLSDPAPF_ 0 0 0 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2;nc|ENSG00000101150|O43399-2|TPD52L2;nc|ENSG00000101150|O43399-4|TPD52L2;nc|ENSG00000101150|O43399-3|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-6|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 MSMS AL20221201_MKP_PDAC_01 4 486.2640991210938 2 486.263468 970.512382 NaN NaN NaN NaN NaN NaN NaN 49.399 1 44.003 43.503 44.503 -5.3961 0 0 0 0.18351 1 30861 30861 32.786 11.039 1 28039 1919;16089 18750 19116 33035 33035 0.025946690402292916 KPLTRLNPA 9 Unmodified _KPLTRLNPA_ 0 0 0 REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3114318847656 2 505.311284 1008.60801 0.47353 0.00023928 0.32255 0.00016299 0.79608 0.00040227 505.311301075137 36.468 0.35915 32.275 32.137 32.496 -4.1928 33 22 2 0 0 0 0.14 1 21298 21298 29.082 9.7196 1 24783000 + 28040 27012 18751 19117 33036 33036 0.1040544195111579 KPLTRLNPA 9 Unmodified _KPLTRLNPA_ 0 0 0 REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF REV__ENST00000434763.1_1_X:152869982-152870534:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.7347412109375 2 505.311284 1008.60801 0.47353 0.00023928 0.32255 0.00016299 0.79608 0.00040227 505.311301075137 36.468 0.35915 32.275 32.137 32.496 -4.1928 33 22 2 0 0 0 0.13704 1 21322 21322 26.268 5.8536 1 24783000 + 28041 27012 18751 19117 33037 33037 0.1040544195111579 KPLVVQRTL 9 Unmodified _KPLVVQRTL_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8979797363281 3 351.897481 1052.67061 1.8581 0.00065384 -0.22834 -8.0352E-05 1.6297 0.00057349 351.89738917934017 21.722 0.30861 18.987 18.813 19.122 -2.7348 31 16 3 0 0 0 0.43463 1 11616 11616 7.1017 0 1 1933900 28042 368 18752 19118 33038 33038 0.1463858801932929 KPLYIVTEF 9 Unmodified _KPLYIVTEF_ 0 0 0 ENSG00000074966|ENST00000264316|TXK ENSG00000074966|ENST00000264316|TXK ENSG00000074966|ENST00000264316|TXK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3156127929688 2 555.3157 1108.61685 NaN NaN NaN NaN NaN NaN NaN 66.135 1 65.652 65.152 66.152 -0.48323 0 0 0 0.20097 1 36105 36105 39.95 0 1 28043 1140 18753 19119 33039 33039 0.06688370796950949 KPMEKLLGL 9 Oxidation (M) _KPM(Oxidation (M))EKLLGL_ KPM(1)EKLLGL KPM(44)EKLLGL 0 0 1 ENSG00000182180|ENST00000372945|MRPS16;ENST00000473427.1_1_10:75010612-75012314:-|nuORF;ENST00000471251.5_1_10:75010612-75012041:-|nuORF ENSG00000182180|ENST00000372945|MRPS16 ENSG00000182180|ENST00000372945|MRPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8098754882812 2 522.809728 1043.6049 0.067816 3.5455E-05 0.38924 0.0002035 0.45706 0.00023895 522.8098805091064 41.144 0.34993 40.841 40.659 41.009 -0.30304 35 15 3 0 0 0 0.053952 1 21790 21790 43.982 6.0078 1 3875200 28044 9028 18754 19120 33040 33040 1517 0.08484430782095842 KPMEKLLGL 9 Oxidation (M) _KPM(Oxidation (M))EKLLGL_ 0 0 1 ENSG00000182180|ENST00000372945|MRPS16;ENST00000473427.1_1_10:75010612-75012314:-|nuORF;ENST00000471251.5_1_10:75010612-75012041:-|nuORF ENSG00000182180|ENST00000372945|MRPS16 ENSG00000182180|ENST00000372945|MRPS16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.809728 1043.6049 0.26598 0.00013906 1.058 0.00055315 1.324 0.00069221 522.8102770743578 40.843 0.23917 40.841 40.731 40.97 -0.0017929 0.00018084 0.00044072 NaN 43.982 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1617900 28045 9028 18754 19120 1517 0.08484430782095842 KPMEVFQSSSL 11 Oxidation (M) _KPM(Oxidation (M))EVFQSSSL_ KPM(1)EVFQSSSL KPM(76)EVFQSSSL 0 0 1 ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.813720703125 2 634.813196 1267.61184 -0.021295 -1.3519E-05 -0.37513 -0.00023814 -0.39642 -0.00025166 634.8132153021012 40.15 0.26576 40.15 40.03 40.295 0 34 12 4 0 0 0 0.004841 1 21559 21559 75.571 17.849 1 5160500 28046 12714 18755 19121 33041 33041 1753 -0.011263011279652346 KPMEVFQSSSL 11 Oxidation (M) _KPM(Oxidation (M))EVFQSSSL_ KPM(1)EVFQSSSL KPM(53)EVFQSSSL 0 0 1 ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.8135986328125 2 634.813196 1267.61184 NaN NaN NaN NaN NaN NaN NaN 45.514 1 40.559 40.059 41.059 -4.9549 0 0 0 0.083897 1 27953 27953 53.317 18.385 1 28047 12714 18755 19121 33042 33042 1753 -0.011263011279652346 KPMEVFQSSSL 11 Unmodified _KPMEVFQSSSL_ 0 0 0 ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF ENST00000393766.6_1_4:166258954-166258996:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8169555664062 2 626.815738 1251.61692 0.5171 0.00032413 0.62963 0.00039466 1.1467 0.00071879 626.8161437280156 55.813 0.33677 49.892 49.688 50.024 -5.9211 26 19 2 0 0 0 5.2027E-06 1 35513 35513 94.909 38.732 1 16402000 28048 12714 18755 19122 33043 33043 0.001180027346663337 KPMGKVVTY 9 Oxidation (M) _KPM(Oxidation (M))GKVVTY_ KPM(1)GKVVTY KPM(44)GKVVTY 0 0 1 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7872314453125 2 519.786253 1037.55795 1.0033 0.00052149 0.1975 0.00010266 1.2008 0.00062415 519.7864614368813 19.17 0.37622 16.514 16.299 16.675 -2.6564 63 25 3 0 0 0 0.05483 1 10170 10170 43.772 17.431 1 15586000 28049 2610 18756 19123 33044 33044 449 0.040675712309621304 KPMGKVVTY 9 Unmodified _KPMGKVVTY_ 0 0 0 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7890930175781 2 511.788795 1021.56304 -0.28612 -0.00014643 0.57196 0.00029272 0.28584 0.00014629 511.78913671885215 25.527 0.43388 22.644 22.406 22.84 -2.8831 66 23 4 0 0 0 0.0086209 2 13989 13885;13989 89.401 58.764 1 32285000 28050 2610 18756 19124 33045;33046 33046 0.05311875093570961 KPMMIITEY 9 2 Oxidation (M) _KPM(Oxidation (M))M(Oxidation (M))IITEY_ KPM(1)M(1)IITEY KPM(46)M(46)IITEY 0 0 2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.28515625 2 579.282686 1156.55082 0.29552 0.00017119 -0.46944 -0.00027194 -0.17391 -0.00010074 579.2827081823381 37.225 0.39173 37.225 36.977 37.369 0 75 19 5 0 0 0 0.047788 1 19711 19711 45.7 27.553 1 121410000 28051 5434 18757 19125 33047 33047 998;999 -0.021195294317521984 KPMMIITEY 9 2 Oxidation (M) _KPM(Oxidation (M))M(Oxidation (M))IITEY_ KPM(1)M(1)IITEY KPM(56)M(56)IITEY 0 0 2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2819213867188 2 579.282686 1156.55082 0.22107 0.00012806 -1.1128 -0.00064462 -0.89172 -0.00051656 579.2822922672744 37.501 0.41378 37.501 37.35 37.764 0 79 21 5 0 0 0 0.028475 1 19929 19929 56.177 56.177 1 128930000 28052 5434 18757 19125 33048 33048 998;999 -0.021195294317521984 KPMMIITEY 9 2 Oxidation (M) _KPM(Oxidation (M))M(Oxidation (M))IITEY_ KPM(1)M(1)IITEY KPM(42)M(42)IITEY 0 0 2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.283447265625 2 579.282686 1156.55082 1.1141 0.00064536 0.54851 0.00031774 1.6626 0.00096311 579.2826818027132 41.967 0.50746 37.282 36.985 37.492 -4.6846 83 31 4 0 0 0 0.06294 1 25285 25285 41.84 14.956 1 57396000 28053 5434 18757 19125 33049 33049 998;999 -0.021195294317521984 KPMMIITEY 9 2 Oxidation (M) _KPM(Oxidation (M))M(Oxidation (M))IITEY_ KPM(1)M(1)IITEY KPM(48)M(48)IITEY 0 0 2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2825927734375 2 579.282686 1156.55082 0.80027 0.00046358 -0.40581 -0.00023508 0.39447 0.00022851 579.2826858036298 42.327 0.36028 37.642 37.46 37.82 -4.6846 69 23 4 0 0 0 0.044011 1 25569 25569 47.749 29.602 1 49234000 28054 5434 18757 19125 33050 33050 998;999 -0.021195294317521984 KPMMIITEY 9 Unmodified _KPMMIITEY_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2882690429688 2 563.287771 1124.56099 -0.01446 -8.1453E-06 -0.092689 -5.2211E-05 -0.10715 -6.0356E-05 563.2879812786728 56.768 0.28296 56.282 56.17 56.453 -0.48554 29 13 3 0 0 0 0.2289 1 30852 30852 27.629 9.4825 1 2763200 28055 5434 18757 19126 33051 33051 0.003690782934654635 KPMMIITEY 9 Unmodified _KPMMIITEY_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2877807617188 2 563.287771 1124.56099 1.0077 0.00056764 -0.22416 -0.00012627 0.78356 0.00044137 563.287601285827 62.277 0.6834 56.102 55.843 56.526 -6.1757 70 37 2 0 0 0 0.060956 3 40086 40086;40224;40361 53.833 17.706 1 147800000 28056 5434 18757 19126 33052;33053;33054 33052 0.003690782934654635 KPMMKEFRF 9 Unmodified _KPMMKEFRF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1 ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2128295898438 3 405.212195 1212.61476 1.6238 0.00065797 -1.3288 -0.00053845 0.29494 0.00011951 405.21147358858434 41.806 0.42889 37.199 36.999 37.428 -4.6079 37 26 2 0 0 0 0.22317 1 25251 25251 20.871 12.716 1 4557700 28057 2113 18758 19127 33055 33055 0.01695295515833095 KPNANRIAL 9 Unmodified _KPNANRIAL_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.801025390625 2 498.801083 995.587613 -0.23327 -0.00011636 0.00017425 8.6917E-08 -0.2331 -0.00011627 498.8011102428716 25.77 0.33302 25.77 25.591 25.924 0 44 15 4 0 0 0 0.06187 1 13180 13180 42.095 11.87 1 15735000 28058 4363 18759 19128 33056 33056 0.08964271291313253 KPNANRIAL 9 Unmodified _KPNANRIAL_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.8009643554688 2 498.801083 995.587613 0.17606 8.7817E-05 0.72866 0.00036346 0.90472 0.00045128 498.80138247097 25.832 0.12984 25.815 25.75 25.88 -0.017006 13 8 2 0 0 0 0.008678 1 13266 13266 88.904 44.497 1 33124000 28059 4363 18759 19128 33057 33057 0.08964271291313253 KPNANRIAL 9 Unmodified _KPNANRIAL_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8008117675781 2 498.801083 995.587613 0.28309 0.0001412 -0.26333 -0.00013135 0.019761 9.8566E-06 498.80075907562565 25.53 0.19232 25.555 25.494 25.686 0.02487 21 11 3 0 0 0 0.008678 1 13211 13211 88.904 36.635 1 44649000 28060 4363 18759 19128 33058 33058 0.08964271291313253 KPNANRIAL 9 Unmodified _KPNANRIAL_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.801513671875 2 498.801083 995.587613 0.53568 0.0002672 0.070275 3.5053E-05 0.60595 0.00030225 498.80110163680934 27.967 0.59275 24.819 24.526 25.119 -3.1482 101 31 4 0 0 0 0.0082281 3 15407 15407;15523;15645 92.822 48.415 1 456280000 28061 4363 18759 19128 33059;33060;33061 33059 0.08964271291313253 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2349243164062 3 420.234933 1257.68297 0.6796 0.00028559 -0.18513 -7.7799E-05 0.49447 0.00020779 420.2348805260849 47.194 0.35468 46.842 46.665 47.02 -0.3526 56 17 4 0 0 0 0.13715 2 25234 25234;25333 30.431 17.576 1 49632000 28062 4363 18760 19129 33062;33063 33062 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8497314453125 2 629.848761 1257.68297 0.44418 0.00027976 0.16202 0.00010205 0.6062 0.00038181 629.8487833858309 47.203 0.29505 46.85 46.685 46.98 -0.3526 34 14 3 0 0 0 0.004841 1 25266 25266 75.571 38.496 1 10563000 28063 4363 18760 19129 33064 33064 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2355041503906 3 420.234933 1257.68297 1.1438 0.00048068 -0.83622 -0.00035141 0.3076 0.00012927 420.23461652922634 46.918 0.32273 46.884 46.693 47.016 -0.033417 47 15 4 0 0 0 0.11933 2 25217 25217;25322 27.129 12.291 1 32721000 28064 4363 18760 19129 33065;33066 33065 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8483276367188 2 629.848761 1257.68297 1.2796 0.00080597 -0.9054 -0.00057026 0.37423 0.00023571 629.8480628197988 46.914 0.22263 46.88 46.753 46.976 -0.033421 27 10 3 0 0 0 0.0033762 1 25229 25229 78.06 41.554 1 8044400 28065 4363 18760 19129 33067 33067 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8478393554688 2 629.848761 1257.68297 0.79908 0.0005033 -0.59597 -0.00037537 0.20312 0.00012793 629.8484741045111 51.196 0.43995 45.547 45.297 45.737 -5.649 62 26 3 0 0 0 1.7696999999999998E-28 2 32081 32081;32202 162.31 99.087 1 81426000 28066 4363 18760 19129 33068;33069 33068 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2351379394531 3 420.234933 1257.68297 1.292 0.00054294 -0.471 -0.00019793 0.82099 0.00034501 420.2347230907725 51.139 0.47371 45.49 45.28 45.753 -5.649 70 28 3 0 0 0 0.065225 2 32082 32082;32214 32.616 11.745 1 172320000 28067 4363 18760 19129 33070;33071 33070 0.0644357969167686 KPNANRIALDF 11 Unmodified _KPNANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 420.234933 1257.68297 -0.054087 -2.2729E-05 0.38133 0.00016025 0.32724 0.00013752 420.2348179846562 47.008 0.18122 47.008 46.922 47.103 0 0.096439 0.00086043 NaN 27.129 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1891400 28068 4363 18760 19129 0.0644357969167686 KPNDSRALQL 10 Unmodified _KPNDSRALQL_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2160339355469 3 381.21565 1140.62512 -0.53977 -0.00020577 1.005 0.00038311 0.46519 0.00017734 381.216259956056 28.867 0.20133 28.867 28.761 28.963 0 21 9 3 0 0 0 0.34249 1 14929 14929 21.799 13.854 1 2197700 28069 2952 18761 19130 33072 33072 0.06043317766284417 KPNGLILQY 9 Unmodified _KPNGLILQY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3;ENST00000515333.1_1_6:83900509-83900731:-|nuORF ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.3063354492188 2 523.305667 1044.59678 0.43369 0.00022695 -0.12959 -6.7816E-05 0.3041 0.00015914 523.3055932976977 52.446 0.40723 52.013 51.789 52.197 -0.43367 63 20 4 0 0 0 0.23158 1 28277 28277 20.454 5.6154 1 38738000 28070 473 18762 19131 33073 33073 0.0762661985700106 KPNGLILQY 9 Unmodified _KPNGLILQY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3;ENST00000515333.1_1_6:83900509-83900731:-|nuORF ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.306640625 2 523.305667 1044.59678 0.35404 0.00018527 0.18908 9.8949E-05 0.54312 0.00028422 523.3057623589727 52.077 0.39423 52.018 51.835 52.229 -0.058918 50 18 4 0 0 0 0.026094 1 28156 28156 57.471 28.39 1 19479000 28071 473 18762 19131 33074 33074 0.0762661985700106 KPNGLILQY 9 Unmodified _KPNGLILQY_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3;ENST00000515333.1_1_6:83900509-83900731:-|nuORF ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3062133789062 2 523.305667 1044.59678 0.98861 0.00051735 -0.10971 -5.741E-05 0.87891 0.00045994 523.3056473054977 57.703 0.53298 51.676 51.39 51.923 -6.0275 76 29 4 0 0 0 0.013323 2 36944 36815;36944 71.134 47.113 1 213650000 28072 473 18762 19131 33075;33076 33076 0.0762661985700106 KPNHTLVLL 9 Unmodified _KPNHTLVLL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8212890625 2 517.821484 1033.62842 0.72138 0.00037354 -1.5711 -0.00081356 -0.84974 -0.00044001 517.8205847109349 46.168 0.34289 46.139 45.947 46.29 -0.029354 35 15 3 0 0 0 0.06294 1 24878 24878 41.84 3.6884 1 10616000 28073 6889;9141 18763 19132 33077 33077 0.1129461261095912 KPNIGRQSQL 10 Unmodified _KPNIGRQSQL_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8878479003906 3 380.887645 1139.64111 1.6488 0.00062799 -1.1551 -0.00043996 0.49366 0.00018803 380.8872852547595 21.237 0.42907 18.544 18.358 18.787 -2.693 53 35 2 0 0 0 0.56348 1 11360 11360 15.739 6.7624 1 10231000 28074 887 18764 19133 33078 33078 0.07687024003189435 KPNLNLQVL 9 Unmodified _KPNLNLQVL_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8193969726562 2 519.818941 1037.62333 0.79338 0.00041241 -0.12686 -6.5944E-05 0.66652 0.00034647 519.8188744392484 57.91 0.41893 57.844 57.634 58.053 -0.066036 30 20 2 0 0 0 0.14602 1 31514 31514 28.487 3.0875 1 2310400 28075 2677 18765 19134 33079 33079 0.10602308748320866 KPNLNLQVL 9 Unmodified _KPNLNLQVL_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.818941 1037.62333 0.17933 9.3218E-05 -0.30212 -0.00015705 -0.12279 -6.3827E-05 519.8191032148035 58.299 0.34586 57.808 57.597 57.943 -0.49079 -0.018006 -6.7988E-05 NaN 28.487 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1330300 28076 2677 18765 19134 0.10602308748320866 KPNLNLQVL 9 Unmodified _KPNLNLQVL_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.818941 1037.62333 0.79338 0.00041241 -0.12686 -6.5944E-05 0.66652 0.00034647 519.8188744392484 57.91 0.41893 57.844 57.634 58.053 -0.066036 0.018006 0.00011422 NaN 28.487 30 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2310400 28077 2677 18765 19134 0.10602308748320866 KPNLRTLDH 9 Unmodified _KPNLRTLDH_ 0 0 0 REV__nc|ENSG00000111077|Q63HR2-5|TNS2;REV__ENST00000549311.7_1_12:53443879-53456445:+|nuORF REV__nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3089599609375 2 547.309272 1092.60399 1.2128 0.00066377 -1.6641 -0.00091078 -0.45131 -0.000247 547.3083638005036 46.91 0.243 46.876 46.733 46.976 -0.033421 27 11 3 0 0 0 0.19127 1 25289 25289 24.021 4.6586 1 8190300 + 28078 18734;28694 18766 19135 33080 33080 0.0613935245742141 KPNRVLARAI 10 Unmodified _KPNRVLARAI_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5;REV__ENSG00000085563|ENST00000622132|ABCB1 REV__ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2462463378906 3 379.912013 1136.71421 0.66991 0.00025451 -0.072064 -2.7378E-05 0.59784 0.00022713 379.91195481045645 23.802 0.36821 20.974 20.809 21.178 -2.8273 38 22 2 0 0 0 0.44373 1 12945 12945 12.175 0 1 6628900 + 28079 16953;17754 18767 19136 33081 33081 0.15132197516436463 KPNSNQVNL 9 Unmodified _KPNSNQVNL_ 0 0 0 nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM nc|ENSG00000023909|P48507-2|GCLM nc|ENSG00000023909|P48507-2|GCLM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2733764648438 2 507.272355 1012.53016 0.019756 1.0022E-05 0.98849 0.00050143 1.0082 0.00051146 507.27280551578946 23.345 0.59156 23.345 22.938 23.529 0 74 29 3 0 0 0 0.15471 1 11807 11807 27.629 3.6082 1 8855800 28080 549 18768 19137 33082 33082 0.024393842950985345 KPNYKKLEL 9 Unmodified _KPNYKKLEL_ 0 0 0 nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A nc|ENSG00000068796|O00139-2|KIF2A nc|ENSG00000068796|O00139-2|KIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.228515625 3 378.229008 1131.66519 0.37525 0.00014193 -0.24431 -9.2405E-05 0.13094 4.9524E-05 378.2289436784126 26.502 0.14401 26.47 26.359 26.503 -0.031708 10 6 2 0 0 0 0.047194 1 13624 13624 46.022 12.577 1 7458700 28081 987 18769 19138 33083 33083 0.10462864436840391 KPPALLPQLR 10 Unmodified _KPPALLPQLR_ 0 0 0 ENST00000459803.5_1_3:75481986-75484186:-|nuORF ENST00000459803.5_1_3:75481986-75484186:-|nuORF ENST00000459803.5_1_3:75481986-75484186:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.865478515625 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 106.26 1 100.08 99.584 100.58 -6.1757 0 0 0 0.99248 1 71136 71136 1.4819 0.15237 1 28082 13634 18770 19139 33084 33084 0.1522256342768742 KPPFVRNSL 9 Unmodified _KPPFVRNSL_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2101440429688 3 353.209948 1056.60801 1.3234 0.00046745 -1.4464 -0.00051087 -0.12293 -4.3421E-05 353.2093735262235 31.804 0.32407 28.108 27.947 28.271 -3.6958 25 17 2 0 0 0 0.49766 1 18063 18063 7.609 0.88579 1 20323000 28083 2986 18771 19140 33085 33085 0.08197441951142537 KPPGDPHLF 9 Unmodified _KPPGDPHLF_ 0 0 0 REV__ENSG00000168056|ENST00000301873|LTBP3 REV__ENSG00000168056|ENST00000301873|LTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2701416015625 2 504.269084 1006.52362 1.1301 0.00056985 -0.32013 -0.00016143 0.80992 0.00040842 504.2688760374787 60.954 0.42422 54.806 54.612 55.036 -6.1478 39 22 2 0 0 0 0.05447 1 39209 39209 43.858 0 1 25340000 + 28084 22283 18772 19141 33086 33086 0.020614911343727726 KPPPRAAA 8 Unmodified _KPPPRAAA_ 0 0 0 REV__ENST00000447425.1_1_7:22813267-22813561:-|nuORF REV__ENST00000447425.1_1_7:22813267-22813561:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.209716796875 2 404.245412 806.476272 -0.40332 -0.00016304 -0.62818 -0.00025394 -1.0315 -0.00041698 404.2451137753959 23.871 0.34367 23.871 23.714 24.058 0 25 16 2 0 0 0 8.7369 1 12188 12188 1.8442 0 1 363850 + 28085 27162 18773 19142 33087 33087 0.06529256654027904 KPPRAAPQ 8 Unmodified _KPPRAAPQ_ 0 0 0 REV__ENSG00000007545|ENST00000397412|CRAMP1 REV__ENSG00000007545|ENST00000397412|CRAMP1 MSMS AL20221201_MKP_PDAC_01 4 432.5463562011719 2 432.756144 863.497735 NaN NaN NaN NaN NaN NaN NaN 27.964 1 24.816 24.316 25.316 -3.1482 0 0 0 0.95973 1 15543 15543 8.5933 2.8329 1 + 28086 17014 18774 19143 33088 33088 0.060526416827428875 KPPSPREALSF 11 Unmodified _KPPSPREALSF_ 0 0 0 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 REV__nc|ENSG00000147144|Q96HB5-2|CCDC120 MSMS AL20221201_MKP_PDAC_01 4 410.2292785644531 3 410.227667 1227.66117 NaN NaN NaN NaN NaN NaN NaN 20.82 1 18.127 17.627 18.627 -2.693 0 0 0 0.93969 1 11109 11109 1.1098 0 1 + 28087 20870 18775 19144 33089 33089 0.0564477494312996 KPQDYKKRLSV 11 Unmodified _KPQDYKKRLSV_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.6031494140625 3 454.601504 1360.78268 1.2147 0.00055219 1.0995 0.00049982 2.3142 0.001052 454.60178711713536 20.075 0.21785 17.419 17.275 17.493 -2.6564 29 12 3 0 0 0 0.23131 1 10646 10646 30.414 22.985 1 2632100 28088 7707 18776 19145 33090 33090 0.11672397305642335 KPQEQSRRF 9 Unmodified _KPQEQSRRF_ 0 0 0 nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3179321289062 2 588.317628 1174.6207 0.11391 6.7013E-05 0.045823 2.6958E-05 0.15973 9.3971E-05 588.3176934305606 22.887 0.41625 20.108 19.92 20.336 -2.7784 73 28 3 0 0 0 0.38785 1 12378 12378 13.042 2.9685 1 46027000 28089 9478 18777 19146 33091 33091 0.04037853343356801 KPQETIVL 8 Unmodified _KPQETIVL_ 0 0 0 REV__ENSG00000104856|ENST00000221452|RELB REV__ENSG00000104856|ENST00000221452|RELB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2789916992188 2 464.279118 926.543683 0.58139 0.00026993 0.75208 0.00034918 1.3335 0.0006191 464.27942418939824 74.175 0.37733 73.699 73.487 73.864 -0.47588 32 15 3 0 0 0 0.57045 2 40540 40540;40644 28.487 0 1 2699800 + 28090 18379 18778 19147 33092;33093 33092 0.07747242074333371 KPQGPRGFL 9 Unmodified _KPQGPRGFL_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2898559570312 2 500.290351 998.566149 -0.20206 -0.00010109 -0.12277 -6.1423E-05 -0.32483 -0.00016251 500.29014152155213 31.531 0.2554 31.561 31.457 31.712 0.030106 17 11 2 0 0 0 0.095405 1 16542 16542 34.102 10.954 1 1687500 28091 6622 18779 19148 33094 33094 0.06680886262597596 KPQGRVVNV 9 Unmodified _KPQGRVVNV_ 0 0 0 ENSG00000159228|ENST00000290349|CBR1 ENSG00000159228|ENST00000290349|CBR1 ENSG00000159228|ENST00000290349|CBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.8008117675781 2 498.801083 995.587613 -0.23327 -0.00011636 0.00017425 8.6917E-08 -0.2331 -0.00011627 498.8011102428716 25.77 0.33302 25.77 25.591 25.924 0 44 15 4 0 0 0 0.41742 1 13282 13282 11.64 0.81637 1 15735000 28092 6638 18780 19149 33095 33095 0.08964271291324621 KPQKPIPRP 9 Unmodified _KPQKPIPRP_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000168356|Q9UI33-2|SCN11A;nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;ENSG00000185313|ENST00000449082|SCN10A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000185313|ENST00000449082|SCN10A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000183873|Q14524-5|SCN5A nc|ENSG00000196876|Q9UQD0-5|SCN8A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.2255554199219 3 354.225709 1059.6553 NaN NaN NaN NaN NaN NaN NaN 81.787 1 81.787 81.287 82.287 0 0 0 0 0.86004 1 45386 45386 0.26902 0 1 28093 9878;363;9361;6253;9207;7873 18781 19150 33096 33096 0.12785721222121538 KPQLIERCI 9 Unmodified _KPQLIERCI_ 0 0 0 REV__nc|ENSG00000123572|Q7Z2Y5-3|NRK REV__nc|ENSG00000123572|Q7Z2Y5-3|NRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2147521972656 3 367.214593 1098.62195 0.14521 5.3322E-05 0.86482 0.00031758 1.01 0.0003709 367.5493971039597 28.046 0.28242 28.076 27.906 28.188 0.029564 22 10 3 0 0 0 0.53557 1 14571 14571 3.3196 0 1 3906500 + 28094 29612 18782 19151 33097 33097 0.07658351387908624 KPQLLMWAL 9 Unmodified _KPQLLMWAL_ 0 0 0 ENST00000512078.5_1_5:59893582-59984814:-|nuORF;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B ENST00000512078.5_1_5:59893582-59984814:-|nuORF ENST00000512078.5_1_5:59893582-59984814:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.215087890625 3 367.215934 1098.62597 0.11252 4.132E-05 -2.4107 -0.00088526 -2.2982 -0.00084394 367.21508152306126 28.29 0.25514 28.32 28.212 28.467 0.029564 18 10 2 0 0 0 0.4887 1 14744 14744 8.1555 3.108 1 2709500 28095 614 18783 19152 33098 33098 0.08060440881627073 KPQLLMWAL 9 Unmodified _KPQLLMWAL_ 0 0 0 ENST00000512078.5_1_5:59893582-59984814:-|nuORF;nc|ENSG00000035499|Q8WUY9-2|DEPDC1B;ENSG00000035499|ENST00000265036|DEPDC1B ENST00000512078.5_1_5:59893582-59984814:-|nuORF ENST00000512078.5_1_5:59893582-59984814:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 367.215934 1098.62597 -0.77286 -0.00028381 -4.1735 -0.0015326 -4.9463 -0.0018164 367.2142398492685 28.248 0.12212 28.248 28.149 28.271 0 -0.035732 -0.0017254 NaN 8.1555 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 404710 28096 614 18783 19152 0.08060440881627073 KPQLYFLR 8 Unmodified _KPQLYFLR_ 0 0 0 REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.8153076171875 2 532.816202 1063.61785 NaN NaN NaN NaN NaN NaN NaN 18.394 1 15.772 15.272 16.272 -2.6215 0 0 0 0.9192 1 9684 9684 16.942 0.79319 1 + 28097 19203 18784 19153 33099 33099 0.08858629956512232 KPQNKIKML 9 Unmodified _KPQNKIKML_ 0 0 0 REV__nc|ENSG00000168297|Q7Z7A4-5|PXK REV__nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2268676757812 3 367.226722 1098.65834 1.2359 0.00045385 0.13272 4.874E-05 1.3686 0.00050259 367.2266871166608 38.916 0.3926 34.466 34.282 34.675 -4.4509 67 24 5 0 0 0 0.16226 1 22986 22986 24.991 5.629 1 17322000 + 28098 22302 18785 19154 33100 33100 0.11295228284643599 KPQSKELTL 9 Unmodified _KPQSKELTL_ 0 0 0 nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.30908203125 2 522.308406 1042.60226 -0.11166 -5.8321E-05 0.3677 0.00019205 0.25604 0.00013373 522.308528854746 25.628 0.23057 25.628 25.507 25.737 0 26 10 3 0 0 0 0.05483 1 13123 13123 43.772 0 1 1965100 28099 1968 18786 19155 33101 33101 0.08266298648823067 KPQSKELTL 9 Unmodified _KPQSKELTL_ 0 0 0 nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D nc|ENSG00000101447|Q9H4H8-2|FAM83D MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3078002929688 2 522.308406 1042.60226 0.51971 0.00027145 -0.79946 -0.00041757 -0.27975 -0.00014612 522.3079774564555 27.629 0.31514 24.592 24.435 24.75 -3.0365 25 15 2 0 0 0 0.0073703 1 15340 15340 110.79 42.955 1 9201100 28100 1968 18786 19155 33102 33102 0.08266298648823067 KPQTKLLIL 9 Unmodified _KPQTKLLIL_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;TCF3|p.E583D|1|0.04|ENSG00000071564|chr19:1615358-1615358|C/A|missense_variant;nc|ENSG00000196628|P15884-11|TCF4;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884-7|TCF4;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 ENSG00000140262|ENST00000333725|TCF12;ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.355712890625 2 527.35516 1052.69577 1.409 0.00074305 -0.46405 -0.00024472 0.94497 0.00049833 527.3547528061767 50.204 0.3241 50.156 49.986 50.31 -0.048824 34 15 3 0 0 0 0.069655 1 27109 27109 40.239 11.752 1 4519500 28101 1059;5212 18787 19156 33103 33103 0.17152642821906738 KPQTKLLIL 9 Unmodified _KPQTKLLIL_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;TCF3|p.E583D|1|0.04|ENSG00000071564|chr19:1615358-1615358|C/A|missense_variant;nc|ENSG00000196628|P15884-11|TCF4;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884-7|TCF4;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 ENSG00000140262|ENST00000333725|TCF12;ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.9056091308594 3 351.905865 1052.69577 1.3155 0.00046292 -0.25967 -9.138E-05 1.0558 0.00037154 351.90573325655413 50.196 0.2841 50.147 50.006 50.291 -0.048824 30 13 3 0 0 0 0.07087 1 27131 27131 30.703 15.455 1 1452200 28102 1059;5212 18787 19156 33104 33104 0.17152642821906738 KPQTKLLIL 9 Unmodified _KPQTKLLIL_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000196628|P15884-5|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-4|TCF4;TCF3|p.E583D|1|0.04|ENSG00000071564|chr19:1615358-1615358|C/A|missense_variant;nc|ENSG00000196628|P15884-11|TCF4;ENST00000592395.5_1_19:1612394-1615452:-|nuORF;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;ENST00000423021.2_1_9:5112501-5112846:+|nuORF;nc|ENSG00000196628|P15884-7|TCF4;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3 ENSG00000140262|ENST00000333725|TCF12;ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MSMS AL20221201_MKP_PDAC_01 4 527.35546875 2 527.35516 1052.69577 NaN NaN NaN NaN NaN NaN NaN 54.57 1 48.705 48.205 49.205 -5.8653 0 0 0 0.08368 1 34634 34634 47.594 15.289 1 28103 1059;5212 18787 19156 33105 33105 0.17152642821906738 KPQWQPQLQ 9 Unmodified _KPQWQPQLQ_ 0 0 0 REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8768005371094 3 384.876857 1151.60874 -0.60115 -0.00023137 0.86737 0.00033383 0.26622 0.00010246 384.8771517634642 17.23 0.13276 17.23 17.167 17.299 0 69 29 3 0 0 0 0.55144 1 8468 8468 2.4985 0 1 1795000 + 28104 24375 18788 19157 33106 33106 0.03900236600179596 KPQYPTEF 8 Unmodified _KPQYPTEF_ 0 0 0 ENST00000506547.5_1_4:81117206-81117508:+|nuORF ENST00000506547.5_1_4:81117206-81117508:+|nuORF ENST00000506547.5_1_4:81117206-81117508:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2527770996094 2 505.2531 1008.49165 0.9862 0.00049828 -0.68026 -0.0003437 0.30594 0.00015458 505.25265043433353 42.976 0.36539 42.976 42.718 43.084 0 38 18 3 0 0 0 0.50673 1 23269 23269 34.102 1.797 1 8050300 28105 14524 18789 19158 33107 33107 -0.01225921339425895 KPRAGPIAK 9 Unmodified _KPRAGPIAK_ 0 0 0 REV__ENSG00000158301|ENST00000483720|GPRASP2 REV__ENSG00000158301|ENST00000483720|GPRASP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.3012084960938 2 469.300719 936.586885 1.1146 0.00052308 -0.65402 -0.00030693 0.46058 0.00021615 469.30039510984517 21.101 0.30165 18.408 18.225 18.526 -2.693 35 16 3 0 0 0 0.34999 1 11329 11329 14.838 0 1 5505300 + 28106 21426 18790 19159 33108 33108 0.11605476642262147 KPRAGTEIRF 10 Unmodified _KPRAGTEIRF_ 0 0 0 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2279968261719 3 392.22789 1173.66184 -0.44895 -0.00017609 0.6847 0.00026856 0.23575 9.2469E-05 392.22803360484846 24.837 0.2268 24.837 24.697 24.924 0 23 11 3 0 0 0 0.62665 1 12707 12707 9.7643 3.1339 1 2008800 28107 4291 18791 19160 33109 33109 0.0819561438281653 KPRAGTEIRF 10 Unmodified _KPRAGTEIRF_ 0 0 0 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.227783203125 3 392.22789 1173.66184 0.087075 3.4153E-05 -0.29861 -0.00011712 -0.21153 -8.2969E-05 392.22782486762304 24.67 0.26575 24.694 24.559 24.825 0.024429 30 10 4 0 0 0 0.14944 1 12721 12721 39.923 26.308 1 26921000 28108 4291 18791 19160 33110 33110 0.0819561438281653 KPRAMKTIL 9 Unmodified _KPRAMKTIL_ 0 0 0 ENSG00000126787|ENST00000247191|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.557373046875 3 353.2232 1056.64777 0.72424 0.00025582 -0.51911 -0.00018336 0.20514 7.2459E-05 353.22307923001676 25.106 0.24195 22.223 22.183 22.425 -2.8831 33 23 2 0 0 0 0.34134 1 13735 13735 15.248 15.248 1 9361000 28109 3970 18792 19161 33111 33111 0.12171245630202066 KPRASGLL 8 Unmodified _KPRASGLL_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.0592956542969 2 421.266345 840.518136 1.13 0.00047604 0.6436 0.00027113 1.7736 0.00074717 421.26667158349073 22.132 0.26991 19.398 19.219 19.489 -2.7348 21 14 2 0 0 0 8.7369 1 11831 11831 3.9444 0 1 1911000 28110 3072 18793 19162 33112 33112 0.09149812342559471 KPRATWTL 8 Unmodified _KPRATWTL_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7856140136719 2 486.784902 971.55525 0.2112 0.00010281 0.41316 0.00020112 0.62435 0.00030392 486.7852114974721 35.064 0.28664 35.092 34.924 35.211 0.027401 32 12 3 0 0 0 0.36898 1 18476 18476 47.749 13.347 1 7163500 28111 4828 18794 19163 33113 33113 0.06833483888306091 KPRATWTL 8 Unmodified _KPRATWTL_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7851257324219 2 486.784902 971.55525 1.0396 0.00050605 0.075481 3.6743E-05 1.1151 0.00054279 486.7847779400113 38.039 0.43616 33.671 33.419 33.855 -4.3689 62 25 3 0 0 0 0.31379 2 22469 22338;22469 53.833 13.875 1 32299000 28112 4828 18794 19163 33114;33115 33115 0.06833483888306091 KPRATWTLKL 10 Unmodified _KPRATWTLKL_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MSMS AL20221201_MKP_PDAC_01 4 405.2519836425781 3 405.252036 1212.73428 NaN NaN NaN NaN NaN NaN NaN 84.961 1 78.785 78.285 79.285 -6.1757 0 0 0 0.37267 1 55928 55928 32.898 6.8771 1 28113 4828 18795 19164 33116 33116 0.13641948456393038 KPRDVSSVEL 10 Unmodified _KPRDVSSVEL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.3143310546875 2 565.31422 1128.61389 -0.41044 -0.00023203 0.093552 5.2886E-05 -0.31689 -0.00017914 565.314275901433 28.613 0.25551 28.613 28.467 28.723 0 31 12 3 0 0 0 0.084474 1 14767 14767 57.249 13.391 1 14742000 28114 3108 18796 19165 33117 33117 0.05472495672142941 KPRDVSSVEL 10 Unmodified _KPRDVSSVEL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2121276855469 3 377.211906 1128.61389 1.1515 0.00043435 -0.16934 -6.3877E-05 0.98213 0.00037047 377.21179981905925 31.841 0.41376 28.145 27.908 28.322 -3.6958 40 22 2 0 0 0 0.2881 2 18102 17955;18102 28.181 5.4063 1 83147000 28115 3108 18796 19165 33118;33119 33119 0.05472495672142941 KPRDVSSVEL 10 Unmodified _KPRDVSSVEL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3150634765625 2 565.31422 1128.61389 0.80694 0.00045618 0.19613 0.00011088 1.0031 0.00056705 565.3143106182577 31.829 0.45051 28.134 27.908 28.358 -3.6958 41 24 2 0 0 0 0.10467 2 18112 17993;18112 59.052 13.032 1 69037000 28116 3108 18796 19165 33120;33121 33121 0.05472495672142941 KPRDVSSVELL 11 Unmodified _KPRDVSSVELL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.9065551757812 3 414.906594 1241.69795 0.041298 1.7135E-05 -0.19825 -8.2257E-05 -0.15696 -6.5123E-05 414.90660455522953 42.194 0.28986 42.194 42.049 42.339 0 24 14 2 0 0 0 0.47711 1 22826 22826 17.572 6.673 1 7287400 28117 3108 18797 19166 33122 33122 0.08677026769055374 KPRDYTIKV 9 Unmodified _KPRDYTIKV_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1 ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8893127441406 3 373.888874 1118.64479 1.0869 0.00040637 -0.34385 -0.00012856 0.74302 0.00027781 373.8888290789775 26.694 0.3224 23.743 23.579 23.901 -2.9511 43 16 3 0 0 0 0.20428 1 14671 14671 21.59 0 1 18379000 28118 10361 18798 19167 33123 33123 0.09021693777026485 KPREFALAL 9 Unmodified _KPREFALAL_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8145141601562 2 522.813659 1043.61277 0.9269 0.00048459 -0.2688 -0.00014053 0.65809 0.00034406 522.8134623951515 50.492 0.24217 50.443 50.352 50.594 -0.048824 20 11 2 0 0 0 0.11784 1 27303 27303 31.268 2.7815 1 1703400 28119 8125 18799 19168 33124 33124 0.09270326093883341 KPREFALAL 9 Unmodified _KPREFALAL_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.813659 1043.61277 0.41619 0.00021759 0.13741 7.1839E-05 0.5536 0.00028943 522.813632456448 50.872 0.21878 50.458 50.338 50.557 -0.41351 0.0075379 0.00012745 NaN 31.268 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1253600 28120 8125 18799 19168 0.09270326093883341 KPREKVLVI 9 Unmodified _KPREKVLVI_ 0 0 0 nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-1|METTL13 nc|ENSG00000010165|Q8N6R0-4|METTL13 nc|ENSG00000010165|Q8N6R0-4|METTL13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.241943359375 3 361.241248 1080.70191 1.5096 0.00054534 0.50656 0.00018299 2.0162 0.00072833 361.2413092074301 31.165 0.28458 27.469 27.254 27.539 -3.6958 20 13 2 0 0 0 0.20389 1 17650 17650 22.775 5.3323 1 45099000 28121 413 18800 19169 33125 33125 0.16479161053416647 KPREMAITI 9 Unmodified _KPREMAITI_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8054809570312 2 529.804977 1057.5954 0.27054 0.00014333 -0.21193 -0.00011228 0.058611 3.1052E-05 529.8049391895416 53.062 0.14305 52.999 52.901 53.044 -0.063423 11 6 2 0 0 0 0.12424 1 28782 28782 30.637 3.0077 1 993890 + 28122 16987 18801 19170 33126 33126 0.0689066249658481 KPREVFRLP 9 Unmodified _KPREVFRLP_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2321166992188 3 381.232864 1140.67676 -0.28383 -0.00010821 0.51478 0.00019625 0.23095 8.8046E-05 381.2329670683988 36.651 0.23241 36.673 36.559 36.791 0.021545 27 10 3 0 0 0 0.2289 1 19396 19396 20.581 12.972 1 5884700 28123 3520 18802 19171 33127 33127 0.11205106250849894 KPRGCPAG 8 Unmodified _KPRGCPAG_ 0 0 0 nc|ENSG00000162782|Q8NAT2|TDRD5;ENSG00000162782|ENST00000444136|TDRD5 nc|ENSG00000162782|Q8NAT2|TDRD5 nc|ENSG00000162782|Q8NAT2|TDRD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2086791992188 2 393.207973 784.401392 0.09991 3.9285E-05 1.0727 0.00042178 1.1726 0.00046107 393.2086952399768 35.981 0.57421 35.981 35.776 36.35 0 41 28 2 0 0 0 0.80975 1 19039 19039 0.79363 0 1 6597300 28124 6914 18803 19172 33128 33128 0.0005675085116081391 KPRGFARGL 9 Unmodified _KPRGFARGL_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3;ENSG00000108468|ENST00000225603|CBX1 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.8061828613281 2 501.303793 1000.59303 1.2733 0.00063831 -0.049461 -2.4795E-05 1.2238 0.00061352 501.3037273821412 20.678 0.25258 17.985 17.882 18.134 -2.693 28 17 2 0 0 0 0.5029 1 11027 11027 7.2892 1.5574 1 2580400 28125 2572 18804 19173 33129 33129 0.09275994873792115 KPRGLFITI 9 Unmodified _KPRGLFITI_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8318481445312 2 522.831852 1043.64915 0.72651 0.00037984 -0.52706 -0.00027556 0.19945 0.00010428 522.8314875475768 57.988 0.31601 57.922 57.775 58.091 -0.066036 39 15 3 0 0 0 0.024882 1 31563 31563 58.679 14.821 1 16281000 28126 916 18805 19174 33130 33130 0.12907202990618316 KPRGLFITI 9 Unmodified _KPRGLFITI_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MSMS AL20221201_MKP_PDAC_01 4 522.831787109375 2 522.831852 1043.64915 NaN NaN NaN NaN NaN NaN NaN 92.244 1 86.068 85.568 86.568 -6.1757 0 0 0 0.083082 1 60997 60997 47.749 1.7277 1 28127 916 18805 19174 33131 33131 0.12907202990618316 KPRGLFITI 9 Unmodified _KPRGLFITI_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MSMS AL20221201_MKP_PDAC_01 4 522.831787109375 2 522.831852 1043.64915 NaN NaN NaN NaN NaN NaN NaN 92.423 1 86.248 85.748 86.748 -6.1757 0 0 0 0.20153 1 61122 61122 30.637 3.7529 1 28128 916 18805 19174 33132 33132 0.12907202990618316 KPRHQEGEIF 10 Unmodified _KPRHQEGEIF_ 0 0 0 ENST00000489915.1_1_18:6462145-6462637:-|nuORF;ENSG00000089009|ENST00000202773|RPL6;ENST00000553205.1_1_12:112843569-112844143:-|nuORF;ENST00000456481.1_1_7:137407104-137407545:+|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF ENST00000489915.1_1_18:6462145-6462637:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.218994140625 3 414.219283 1239.63602 -0.49537 -0.00020519 0.30857 0.00012781 -0.1868 -7.7376E-05 414.2193984594857 20.636 0.17025 20.636 20.542 20.712 0 18 12 2 0 0 0 0.69385 1 10375 10375 3.5871 1.9948 1 1341300 28129 1507 18806 19175 33133 33133 0.025787201405591986 KPRKAFPVL 9 Unmodified _KPRKAFPVL_ 0 0 0 nc|ENSG00000090020|P19634-2|SLC9A1;ENSG00000090020|ENST00000263980|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5631713867188 3 352.562321 1054.66514 2.1046 0.00074199 -0.080664 -2.8439E-05 2.0239 0.00071355 352.5622859609452 34.037 0.43534 30.051 29.731 30.167 -3.9853 41 23 3 0 0 0 0.2546 1 19529 19529 19.362 6.4893 1 7111800 28130 1545 18807 19176 33134 33134 0.13998909227507284 KPRKGGGG 8 Unmodified _KPRKGGGG_ 0 0 0 REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.7275695800781 2 378.727387 755.44022 NaN NaN NaN NaN NaN NaN NaN 15.999 1 15.985 15.485 16.485 -0.014067 0 0 0 0.97444 1 7878 7878 0 0 1 + 28131 26145 18808 19177 33135 33135 0.05271799477202421 KPRKGGGG 8 Unmodified _KPRKGGGG_ 0 0 0 REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7272644042969 2 378.727387 755.44022 0.031938 1.2096E-05 1.1451 0.00043367 1.177 0.00044577 378.72782943223416 15.747 0.16558 15.752 15.649 15.814 0.0057774 21 14 2 0 0 0 0.81107 1 7834 7834 0 0 1 1064000 + 28132 26145 18808 19177 33136 33136 0.05271799477202421 KPRKGGGG 8 Unmodified _KPRKGGGG_ 0 0 0 REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.224609375 2 378.727387 755.44022 -0.61607 -0.00023332 -2.1781 -0.0008249 -2.7942 -0.0010582 378.72669341614966 103.01 0.097305 102.97 102.91 103 -0.047928 6 3 2 0 0 0 8.7369 1 57227 57227 0.69038 0.69038 1 10268000 + 28133 26145 18808 19177 33137 33137 0.05271799477202421 KPRKGGGG 8 Unmodified _KPRKGGGG_ 0 0 0 REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.7278442382812 2 378.727387 755.44022 0.65178 0.00024685 0.098523 3.7313E-05 0.75031 0.00028416 378.7274544840642 16.525 0.22849 13.968 13.839 14.067 -2.557 60 33 2 0 0 0 0.81107 1 8528 8528 0 0 1 6479400 + 28134 26145 18808 19177 33138 33138 0.05271799477202421 KPRKGGGG 8 Unmodified _KPRKGGGG_ 0 0 0 REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 378.727387 755.44022 0.031938 1.2096E-05 1.1451 0.00043367 1.177 0.00044577 378.72782943223416 15.747 0.16558 15.752 15.649 15.814 0.0057774 0 0 NaN 0 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1064000 + 28135 26145 18808 19177 0.05271799477202421 KPRKLVNTI 9 Unmodified _KPRKLVNTI_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.9021301269531 3 356.901114 1067.68151 1.8673 0.00066644 -0.64565 -0.00023043 1.2216 0.000436 356.90086035595164 21.064 0.49033 18.371 18.134 18.624 -2.693 98 27 5 0 0 0 0.05447 1 11174 11174 33.445 3.6043 1 143890000 28136 293 18809 19178 33139 33139 0.1503799039360274 KPRKLVNTI 9 Unmodified _KPRKLVNTI_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8489379882812 2 534.848033 1067.68151 1.1151 0.0005964 -0.65139 -0.00034839 0.46369 0.000248 534.8476942019109 21.066 0.33832 18.373 18.225 18.563 -2.693 44 18 3 0 0 0 0.0082475 2 11200 11200;11303 106.94 45.583 1 14095000 28137 293 18809 19178 33140;33141 33140 0.1503799039360274 KPRKPAGA 8 Unmodified _KPRKPAGA_ 0 0 0 ENSG00000124575|ENST00000244534|H1-3 ENSG00000124575|ENST00000244534|H1-3 ENSG00000124575|ENST00000244534|H1-3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 412.2527465820312 2 412.758687 823.502821 0.86671 0.00035774 0.64747 0.00026725 1.5142 0.00062499 412.7590034744029 18.281 0.22792 15.66 15.548 15.776 -2.6215 23 16 2 0 0 0 8.7369 1 9597 9597 4.756 0 1 2635100 28138 3802 18810 19179 33142 33142 0.08400945545372451 KPRKPKRQR 9 Unmodified _KPRKPKRQR_ 0 0 0 ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4 ENSG00000169246|ENST00000542817|NPIPB3 ENSG00000169246|ENST00000542817|NPIPB3 MSMS AL20221201_MKP_PDAC_01 4 597.3916015625 2 597.388722 1192.76289 NaN NaN NaN NaN NaN NaN NaN 107.27 1 101.1 100.6 101.6 -6.1757 0 0 0 0.85798 1 71760 71760 0.52476 0.52476 1 28139 7847 18811 19180 33143 33143 0.17422110876213992 KPRKPPTPP 9 Unmodified _KPRKPPTPP_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.3152160644531 2 509.313826 1016.6131 0.012485 6.3586E-06 1.4592 0.00074317 1.4716 0.00074953 509.31447832248523 14.78 0.13957 12.253 12.158 12.298 -2.5273 34 25 2 0 0 0 0.30202 1 7506 7506 17.113 9.2027 1 1505600 28140 10865 18812 19181 33144 33144 0.10545745813737994 KPRLASGM 8 Unmodified _KPRLASGM_ 0 0 0 REV__ENST00000395648.7_2_11:44954521-44954617:-|nuORF REV__ENST00000395648.7_2_11:44954521-44954617:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2449951171875 2 430.244555 858.474557 NaN NaN NaN NaN NaN NaN NaN 54.401 1 48.536 48.036 49.036 -5.8653 0 0 0 0.93587 1 34502 34502 13.508 0 1 + 28141 26480 18813 19182 33145 33145 0.03965879573775055 KPRNVQILNM 10 Unmodified _KPRNVQILNM_ 0 0 0 ENSG00000265354|ENST00000580018|TIMM23 ENSG00000265354|ENST00000580018|TIMM23 ENSG00000265354|ENST00000580018|TIMM23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2341918945312 3 404.900897 1211.68086 1.1959 0.0004842 0.34005 0.00013768 1.5359 0.00062189 404.90117072031404 42.698 0.28923 38.013 37.902 38.191 -4.6846 26 18 2 0 0 0 0.32493 1 25817 25817 26.021 18.544 1 8529800 28142 10860 18814 19183 33146 33146 0.08348827682243609 KPRPFQLKM 9 Unmodified _KPRPFQLKM_ 0 0 0 REV__ENSG00000050555|ENST00000361069|LAMC3 REV__ENSG00000050555|ENST00000361069|LAMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2279357910156 3 382.226833 1143.65867 -0.55042 -0.00021039 3.085 0.0011792 2.5346 0.00096878 382.2280138704199 16.51 0.040241 16.511 16.5 16.541 0.0010548 16 13 2 0 0 0 0.59218 1 8142 8142 0.96228 0.33545 1 281050 + 28143 17261 18815 19184 33147 33147 0.09258648004492898 KPRPFQLKM 9 Unmodified _KPRPFQLKM_ 0 0 0 REV__ENSG00000050555|ENST00000361069|LAMC3 REV__ENSG00000050555|ENST00000361069|LAMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2284240722656 3 382.226833 1143.65867 NaN NaN NaN NaN NaN NaN NaN 16.15 1 16.155 15.655 16.655 0.0050564 0 0 0 0.85798 1 8084 8084 0.23584 0 1 + 28144 17261 18815 19184 33148 33148 0.09258648004492898 KPRPPPLSP 9 Unmodified _KPRPPPLSP_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8006286621094 2 494.800552 987.58655 0.37226 0.0001842 0.3171 0.0001569 0.68936 0.0003411 494.8005949424715 23.591 0.439 23.612 23.448 23.887 0.021185 25 19 2 0 0 0 0.19127 1 12177 12177 24.021 2.2739 1 2878700 28145 3875 18816 19185 33149 33149 0.09226056922409498 KPRPPPLSP 9 Unmodified _KPRPPPLSP_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.8005676269531 2 494.800552 987.58655 0.42089 0.00020826 0.32085 0.00015876 0.74174 0.00036701 494.80062419581844 26.442 0.48303 23.491 23.23 23.713 -2.9511 40 25 2 0 0 0 0.023481 1 14497 14497 60.074 12.325 1 8849500 28146 3875 18816 19185 33150 33150 0.09226056922409498 KPRPPPPPP 9 Unmodified _KPRPPPPPP_ 0 0 0 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 491.7959594726562 2 491.795269 981.575986 NaN NaN NaN NaN NaN NaN NaN 17.368 1 14.781 14.281 15.281 -2.5866 0 0 0 0.18753 1 9074 9074 32.305 10.559 1 28147 6400;10760 18817 19186 33151 33151 0.08446074267988024 KPRPPPSQL 9 Unmodified _KPRPPPSQL_ 0 0 0 nc|ENSG00000168061|A6NKF1-2|SAC3D1;ENST00000530213.5_1_11:64808530-64811777:+|nuORF;ENSG00000168061|ENST00000652489|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1 nc|ENSG00000168061|A6NKF1-2|SAC3D1 nc|ENSG00000168061|A6NKF1-2|SAC3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3042907714844 2 510.303458 1018.59236 0.93168 0.00047544 1.0332 0.00052725 1.9649 0.0010027 510.3039835602937 19.904 0.36165 17.247 17.12 17.481 -2.6564 38 21 3 0 0 0 0.01085 1 10611 10611 78.06 36.221 1 1861800 28148 7711 18818 19187 33152 33152 0.08381155434085485 KPRPTSKL 8 Unmodified _KPRPTSKL_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7925415039062 2 463.792727 925.5709 0.31342 0.00014536 -0.52366 -0.00024287 -0.21024 -9.7506E-05 463.79243045288194 27.701 0.22101 27.731 27.618 27.839 0.029308 15 9 2 0 0 0 0.46677 1 14384 14384 37.974 3.7867 1 9081300 + 28149 24054 18819 19188 33153 33153 0.1051377040537318 KPRPTSKL 8 Unmodified _KPRPTSKL_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 463.792727 925.5709 0.31342 0.00014536 -0.52366 -0.00024287 -0.21024 -9.7506E-05 463.79243045288194 27.701 0.22101 27.731 27.618 27.839 0.029308 -0.094551 6.5158E-05 NaN 37.974 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 9081300 + 28150 24054 18819 19188 0.1051377040537318 KPRQLIIVH 9 Unmodified _KPRQLIIVH_ 0 0 0 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 ENSG00000165934|ENST00000298875|CPSF2 MSMS AL20221201_MKP_PDAC_01 4 368.573486328125 3 368.573109 1102.6975 NaN NaN NaN NaN NaN NaN NaN 27.98 1 24.832 24.332 25.332 -3.1482 0 0 0 0.16996 1 15555 15555 34.402 6.7729 1 28151 7410 18820 19189 33154 33154 0.15025696630527818 KPRRKHKR 8 Unmodified _KPRRKHKR_ 0 0 0 REV__ENSG00000114857|ENST00000232978|NKTR REV__ENSG00000114857|ENST00000232978|NKTR MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3619384765625 2 553.362508 1104.71046 1.5916 0.00088076 1.3454 0.00074448 2.937 0.0016252 553.3628004293231 107.22 0.2971 101.05 100.94 101.24 -6.1757 71 50 2 0 0 0 0.80992 1 71752 71752 0.69038 0 1 2407300 + 28152 18937 18821 19190 33155 33155 0.16229572533256942 KPRSLQTGF 9 Unmodified _KPRSLQTGF_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2930297851562 2 517.293091 1032.57163 0.27202 0.00014071 -0.38211 -0.00019766 -0.11009 -5.6949E-05 517.2927929190737 24.158 0.22902 24.179 24.091 24.32 0.021185 15 8 3 0 0 0 0.032796 1 12460 12460 53.833 21.527 1 5348900 28153 4453 18822 19191 33156 33156 0.05664565054416926 KPRSPDHVL 9 Unmodified _KPRSPDHVL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.2008361816406 3 350.201452 1047.58253 -0.56377 -0.00019743 -0.099844 -3.4966E-05 -0.66361 -0.0002324 350.53565534926696 16.909 0.15196 16.909 16.806 16.958 0 82 37 3 0 0 0 0.25681 2 8250 8242;8250 15.248 6.5031 1 2016000 28154 4022 18823 19192 33157;33158 33158 0.06063967428713113 KPRSPVVEL 9 Unmodified _KPRSPVVEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.8110961914062 2 512.811116 1023.60768 -0.37902 -0.00019436 0.43746 0.00022434 0.058446 2.9972E-05 512.8112490744065 33.197 0.25887 33.197 33.068 33.327 0 22 12 2 0 0 0 0.20428 1 17416 17416 22.736 2.2827 1 3679900 28155 8280 18824 19193 33159 33159 0.09682022231288556 KPRSPVVEL 9 Unmodified _KPRSPVVEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.8117065429688 2 512.811116 1023.60768 -0.36376 -0.00018654 1.4564 0.00074683 1.0926 0.0005603 512.8117833337599 33.255 0.25957 33.096 32.936 33.196 -0.15918 26 10 3 0 0 0 0.10247 1 17304 17304 32.786 5.902 1 3354200 28156 8280 18824 19193 33160 33160 0.09682022231288556 KPRSPVVEL 9 Unmodified _KPRSPVVEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.811279296875 2 512.811116 1023.60768 0.30407 0.00015593 -0.18803 -9.6425E-05 0.11604 5.9505E-05 512.8110193805718 36.413 0.35094 32.22 32.037 32.388 -4.1928 39 21 2 0 0 0 0.047788 1 21202 21202 45.7 7.524 1 24771000 28157 8280 18824 19193 33161 33161 0.09682022231288556 KPRSPVVEL 9 Unmodified _KPRSPVVEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.811116 1023.60768 -0.37902 -0.00019436 0.43746 0.00022434 0.058446 2.9972E-05 512.8112490744065 33.197 0.25887 33.197 33.068 33.327 0 0.089845 -0.00049704 NaN 32.786 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3679900 28158 8280 18824 19193 0.09682022231288556 KPRSPVVEL 9 Unmodified _KPRSPVVEL_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.811116 1023.60768 0.2318 0.00011887 0.03662 1.8779E-05 0.26842 0.00013765 512.8109998537263 32.998 0.16083 33.028 32.957 33.118 0.029743 -0.078878 -0.00090815 NaN 32.786 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 647980 28159 8280 18824 19193 0.09682022231288556 KPRTEGKITL 10 Unmodified _KPRTEGKITL_ 0 0 0 ENST00000477110.6_1_X:299337-302121:-|nuORF;nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENST00000468169.6_1_X:299440-306311:-|nuORF;ENSG00000167393|ENST00000390665|PPP2R3B ENST00000477110.6_1_X:299337-302121:-|nuORF ENST00000477110.6_1_X:299337-302121:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5686340332031 3 381.567912 1141.68191 1.3545 0.00051682 0.29017 0.00011072 1.6446 0.00062754 381.5680315918341 22.029 0.45179 19.294 19.054 19.505 -2.7348 80 25 4 0 0 0 0.18439 2 11847 11746;11847 35.612 3.5748 1 28179000 28160 7606 18825 19194 33162;33163 33163 0.11673365322803875 KPRTPFTTSQL 11 Unmodified _KPRTPFTTSQL_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.9060668945312 3 425.906705 1274.69829 -0.02269 -9.6639E-06 0.23353 9.9463E-05 0.21084 8.9799E-05 425.9068005053173 35.456 0.35608 35.481 35.306 35.663 0.024967 52 16 4 0 0 0 0.35681 2 18683 18683;18798 23.964 11.737 1 27813000 28161 3499 18826 19195 33164;33165 33164 0.07192446488920723 KPRTPFTTSQL 11 Unmodified _KPRTPFTTSQL_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.3565063476562 2 638.356419 1274.69829 -0.04049 -2.5847E-05 0.35431 0.00022618 0.31382 0.00020033 638.8577892332953 35.451 0.22871 35.476 35.373 35.602 0.024967 27 10 3 0 0 0 0.012958 1 18718 18718 64.692 22.379 1 5469700 28162 3499 18826 19195 33166 33166 0.07192446488920723 KPRTPFTTSQL 11 Unmodified _KPRTPFTTSQL_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.9072265625 3 425.906705 1274.69829 0.99792 0.00042502 0.14403 6.1345E-05 1.142 0.00048637 425.906819328886 39.522 0.44083 35.071 34.84 35.281 -4.4509 77 26 4 0 0 0 0.13335 1 23359 23359 26.121 0 1 85774000 28163 3499 18826 19195 33167 33167 0.07192446488920723 KPRTPFTTSQL 11 Unmodified _KPRTPFTTSQL_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.3566284179688 2 638.356419 1274.69829 0.61867 0.00039493 -0.03802 -2.427E-05 0.58065 0.00037066 638.3563403071486 39.516 0.43637 35.065 34.858 35.294 -4.4509 58 26 3 0 0 0 1.1867E-08 2 23422 23422;23558 108.26 36.554 1 26582000 28164 3499 18826 19195 33168;33169 33168 0.07192446488920723 KPRVISADAH 10 Unmodified _KPRVISADAH_ 0 0 0 ENST00000369146.7_1_1:149875772-149875931:-|nuORF ENST00000369146.7_1_1:149875772-149875931:-|nuORF ENST00000369146.7_1_1:149875772-149875931:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.309814453125 2 547.309272 1092.60399 0.57019 0.00031207 -0.16713 -9.1472E-05 0.40306 0.0002206 547.3089608424851 47.198 0.25854 46.846 46.722 46.98 -0.3526 30 12 3 0 0 0 0.29752 1 25310 25310 27.629 3.6082 1 11414000 28165 12298 18827 19196 33170 33170 0.0613935245742141 KPRVLRLQDL 10 Unmodified _KPRVLRLQDL_ 0 0 0 REV__ENSG00000100065|ENST00000251973|CARD10 REV__ENSG00000100065|ENST00000251973|CARD10 MSMS AL20221201_MKP_PDAC_01 4 619.387451171875 2 619.390596 1236.76664 NaN NaN NaN NaN NaN NaN NaN 106.81 1 100.63 100.13 101.13 -6.1757 0 0 0 1.0024 1 71478 71478 0.40072 0 1 + 28166 18008 18828 19197 33171 33171 0.15772735859422937 KPRVTPVEV 9 Unmodified _KPRVTPVEV_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.7652587890625 2 512.811116 1023.60768 0.40334 0.00020684 0.44085 0.00022607 0.84419 0.00043291 512.8114703771301 29.905 0.15953 26.604 26.503 26.663 -3.3016 12 7 2 0 0 0 0.12281 1 16796 16796 23.79 17.584 1 17364000 28167 16013 18829 19198 33172 33172 0.09682022231277188 KPRVTPVEV 9 Unmodified _KPRVTPVEV_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.811116 1023.60768 -0.37143 -0.00019047 -0.031593 -1.6201E-05 -0.40302 -0.00020667 512.8108788063103 26.61 0.23139 26.61 26.508 26.74 0 0.0033479 -0.00026864 NaN 23.79 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 478580 28168 16013 18829 19198 0.09682022231277188 KPRYHFAAL 9 Unmodified _KPRYHFAAL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;ENST00000478047.1_1_10:101997888-102013290:-|nuORF;ENST00000466955.5_1_10:102009871-102027381:-|nuORF;ENST00000482452.5_1_10:102003500-102020776:-|nuORF nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2103881835938 3 368.210059 1101.60835 -0.13648 -5.0253E-05 -1.2835 -0.00047259 -1.42 -0.00052284 368.2094448409034 30.387 0.35189 30.417 30.233 30.585 0.030104 27 15 2 0 0 0 0.087258 1 15893 15893 26.268 10.119 1 2755700 28169 1655 18830 19199 33173 33173 0.06160861670969098 KPSASLSQL 9 Unmodified _KPSASLSQL_ 0 0 0 ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7666625976562 2 465.766374 929.518196 -0.13154 -6.1267E-05 0.065283 3.0406E-05 -0.066258 -3.0861E-05 465.76650732249453 33.945 0.22216 33.945 33.822 34.044 0 13 10 2 0 0 0 0.036857 1 17862 17862 51.63 1.6968 1 1554900 28170 5501 18831 19200 33174 33174 0.05061767551910634 KPSASLSQL 9 Unmodified _KPSASLSQL_ 0 0 0 ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN MSMS AL20221201_MKP_PDAC_01 4 465.7655029296875 2 465.766374 929.518196 NaN NaN NaN NaN NaN NaN NaN 38.031 1 33.662 33.162 34.162 -4.3689 0 0 0 0.044471 1 22382 22382 60.074 5.3004 1 28171 5501 18831 19200 33175 33175 0.05061767551910634 KPSEERVREI 10 Unmodified _KPSEERVREI_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;nc|ENSG00000048392|Q7LG56-3|RRM2B;nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.8982849121094 3 414.89821 1241.6728 0.69075 0.00028659 -0.58843 -0.00024414 0.10232 4.2452E-05 414.8980194613839 17.545 0.28373 14.959 14.816 15.099 -2.5866 176 56 4 0 0 0 0.48505 1 9224 9224 10.899 6.7823 1 81122000 28172 8150 18832 19201 33176 33176 0.06162971966477926 KPSESIYSAL 10 Unmodified _KPSESIYSAL_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7907104492188 2 547.790047 1093.56554 0.87366 0.00047858 3.4143 0.0018703 4.2879 0.0023489 547.7919031098778 46.336 0.49665 46.336 46.068 46.565 0 41 23 2 0 0 0 0.10406 1 25292 25292 45.74 1.8816 1 15133000 28173 9726 18833 19202 33177 33177 0.022500020322468117 KPSFARTVL 9 Unmodified _KPSFARTVL_ 0 0 0 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8058776855469 2 509.805834 1017.59712 0.37446 0.0001909 -0.44908 -0.00022894 -0.074622 -3.8043E-05 509.80564205418824 34.35 0.21331 34.377 34.265 34.478 0.027401 16 9 2 0 0 0 0.094149 1 18115 18115 34.402 2.0962 1 1873800 28174 4253 18834 19203 33178 33178 0.08902039576844345 KPSKWWTCF 9 Carbamidomethyl (C) _KPSKWWTC(Carbamidomethyl (C))F_ KPSKWWTC(1)F KPSKWWTC(85)F 0 1 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000397300.2_1_11:93921617-93921950:-|nuORF;ENST00000467622.2_1_12:110872962-110874052:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MSMS AL20221201_MKP_PDAC_01 4 620.3043212890625 2 620.302601 1238.59065 NaN NaN NaN NaN NaN NaN NaN 86.521 1 80.346 79.846 80.846 -6.1757 0 0 0 0.015528 1 57040 57040 84.522 53.819 1 28175 2768 18835 19204 33179 33179 283 -0.01910221646176069 KPSLEREK 8 Unmodified _KPSLEREK_ 0 0 0 REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7841491699219 2 493.785099 985.555644 0.31393 0.00015502 -1.2649 -0.00062461 -0.95101 -0.00046959 493.7845580234604 18.916 0.11003 18.922 18.839 18.949 0.0060482 8 5 2 0 0 0 0.80068 1 9607 9607 6.2058 0.44535 1 605140 + 28176 27861 18836 19205 33180 33180 0.06228858817519267 KPSLNWAGF 9 Unmodified _KPSLNWAGF_ 0 0 0 ENST00000445336.2_1_X:74804463-74804925:+|nuORF ENST00000445336.2_1_X:74804463-74804925:+|nuORF ENST00000445336.2_1_X:74804463-74804925:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.2694396972656 2 510.269084 1018.52362 NaN NaN NaN NaN NaN NaN NaN 20.421 1 17.728 17.228 18.228 -2.693 0 0 0 0.29524 1 10880 10880 25.399 1.3787 1 28177 13455 18837 19206 33181 33181 0.015094911343794593 KPSLPFTSL 9 Unmodified _KPSLPFTSL_ 0 0 0 ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG ENST00000473378.1_1_X:70331248-70331389:-|nuORF ENST00000473378.1_1_X:70331248-70331389:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2877807617188 2 495.286943 988.559333 0.79872 0.0003956 -0.91349 -0.00045244 -0.11477 -5.6844E-05 495.2871252982692 65.214 0.51325 65.214 64.895 65.408 1.5259E-05 42 24 3 0 0 0 0.021948 1 35707 35707 61.602 17.744 1 6351800 28178 5830 18838 19207 33182 33182 0.06459528591392427 KPSPKTIAF 9 Unmodified _KPSPKTIAF_ 0 0 0 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.79541015625 2 494.794935 987.575317 NaN NaN NaN NaN NaN NaN NaN 30.905 1 30.802 30.302 31.302 -0.10269 0 0 0 0.67877 1 16049 16049 10.074 3.3508 1 28179 5876 18839 19208 33183 33183 0.08103234828286077 KPSPKTIAF 9 Unmodified _KPSPKTIAF_ 0 0 0 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7952575683594 2 494.794935 987.575317 0.076298 3.7752E-05 0.61459 0.0003041 0.69089 0.00034185 494.79502996089525 30.681 0.24357 30.711 30.563 30.806 0.030106 18 10 2 0 0 0 0.32235 1 16028 16028 16.149 0.30192 1 1862600 28180 5876 18839 19208 33184 33184 0.08103234828286077 KPSPKTIAF 9 Unmodified _KPSPKTIAF_ 0 0 0 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 ENSG00000147679|ENST00000309822|UTP23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7977600097656 2 494.794935 987.575317 1.2005 0.00059401 0.54891 0.0002716 1.7494 0.00086561 494.795291029524 33.549 0.27794 29.564 29.507 29.785 -3.9853 25 15 2 0 0 0 0.14594 1 19247 19247 28.495 12.345 1 6529400 28181 5876 18839 19208 33185 33185 0.08103234828286077 KPSPTICSM 9 Carbamidomethyl (C),Oxidation (M) _KPSPTIC(Carbamidomethyl (C))SM(Oxidation (M))_ KPSPTIC(1)SM KPSPTICSM(1) KPSPTIC(83)SM KPSPTICSM(83) 0 1 1 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7451782226562 2 518.743728 1035.4729 1.1745 0.00060926 -0.13863 -7.1913E-05 1.0359 0.00053735 518.7435719647226 20.096 0.42449 17.44 17.239 17.663 -2.6564 48 28 2 0 0 0 0.0094097 2 10620 10620;10727 82.529 26.352 1 5732800 28182 1960 18840 19209 33186;33187 33186 195 334 -0.04341542297129308 KPSPTICSM 9 Carbamidomethyl (C) _KPSPTIC(Carbamidomethyl (C))SM_ KPSPTIC(1)SM KPSPTIC(50)SM 0 1 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7472534179688 2 510.74627 1019.47799 0.34834 0.00017791 -0.90463 -0.00046204 -0.55629 -0.00028412 510.7459509730696 32.883 0.28592 29.027 28.814 29.1 -3.8562 24 15 2 0 0 0 0.040683 1 18776 18776 49.554 11.379 1 12767000 28183 1960 18840 19210 33188 33188 195 -0.030972384345204773 KPSRKGRRKLF 11 Unmodified _KPSRKGRRKLF_ 0 0 0 REV__ENSG00000165623|ENST00000378681|UCMA REV__ENSG00000165623|ENST00000378681|UCMA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.9342651367188 2 686.936037 1371.85752 NaN NaN NaN NaN NaN NaN NaN 100.54 1 100.5 99.996 101 -0.04216 0 0 0 0.94165 1 55848 55848 1.3295 0.87119 1 + 28184 22026 18841 19211 33189 33189 0.18646624627558595 KPSSFTTSF 9 Unmodified _KPSSFTTSF_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2521362304688 2 501.250557 1000.48656 0.67632 0.000339 2.0979 0.0010516 2.7743 0.0013906 501.251807584011 44.852 0.32157 40 39.827 40.148 -4.852 30 22 2 0 0 0 0.069655 1 27382 27382 40.239 6.1368 1 10419000 28185 3590 18842 19212 33190 33190 -0.013662252020367305 KPSSKALGTSL 11 Unmodified _KPSSKALGTSL_ 0 0 0 ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8195190429688 2 544.819138 1087.62372 0.2617 0.00014258 0.20658 0.00011255 0.46828 0.00025513 544.8191305916158 26.393 0.25949 23.441 23.319 23.579 -2.9511 16 13 2 0 0 0 0.0078265 1 14552 14552 70.496 28.656 1 5005500 28186 3365 18843 19213 33191 33191 0.08341683677554101 KPSSTTPRL 9 Unmodified _KPSSTTPRL_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7833862304688 2 493.785099 985.555644 NaN NaN NaN NaN NaN NaN NaN 18.968 1 18.968 18.468 19.468 0 0 0 0 0.75456 1 9462 9462 7.609 1.4032 1 28187 693 18844 19214 33192 33192 0.062288588175078985 KPSSTTPRL 9 Unmodified _KPSSTTPRL_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.783935546875 2 493.785099 985.555644 -0.36479 -0.00018013 0.32524 0.0001606 -0.039551 -1.953E-05 493.785062497128 18.937 0.14789 18.96 18.86 19.008 0.023106 16 9 2 0 0 0 0.32235 1 9501 9501 16.149 1.3108 1 877900 28188 693 18844 19214 33193 33193 0.062288588175078985 KPSSTTPRL 9 Unmodified _KPSSTTPRL_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7860107421875 2 493.785099 985.555644 1.1451 0.00056545 -0.091368 -4.5116E-05 1.0538 0.00052033 493.7850519606107 20.193 0.37041 17.5 17.315 17.685 -2.693 57 25 3 0 0 0 0.029718 2 10699 10699;10812 55.503 21.4 1 8339700 28189 693 18844 19214 33194;33195 33194 0.062288588175078985 KPSSTTPRL 9 Unmodified _KPSSTTPRL_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 493.785099 985.555644 0.31393 0.00015502 -1.2649 -0.00062461 -0.95101 -0.00046959 493.7845580234604 18.916 0.11003 18.922 18.839 18.949 0.0060482 -0.019069 -0.0013329 NaN 16.149 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 605140 28190 693 18844 19214 0.062288588175078985 KPSTKALVL 9 Unmodified _KPSTKALVL_ 0 0 0 nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1 nc|ENSG00000113456|O60671-2|RAD1 nc|ENSG00000113456|O60671-2|RAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.810791015625 2 478.810585 955.606617 0.90059 0.00043121 -0.014484 -6.935E-06 0.88611 0.00042428 478.8106195289297 34.363 0.33031 30.268 30.089 30.419 -4.0951 27 18 2 0 0 0 0.047714 1 19904 19904 45.74 0.040262 1 14942000 28191 2969 18845 19215 33196 33196 0.12703807862362737 KPTALVRFS 9 Unmodified _KPTALVRFS_ 0 0 0 REV__ENST00000415067.1_1_6:32812034-32813149:+|nuORF REV__ENST00000415067.1_1_6:32812034-32813149:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2693786621094 2 509.805834 1017.59712 0.72178 0.00036797 -0.15277 -7.7882E-05 0.56902 0.00029009 509.8057529739291 42.41 0.31041 37.726 37.575 37.885 -4.6846 35 20 2 0 0 0 0.18811 1 25624 25624 17.113 0 1 16668000 + 28192 26752 18846 19216 33197 33197 0.08902039576855714 KPTDEKLREL 10 Unmodified _KPTDEKLREL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.2353515625 3 410.23471 1227.6823 -0.42489 -0.00017431 1.4571 0.00059777 1.0323 0.00042347 410.23530962575245 22.151 0.18879 22.151 22.035 22.224 0 19 9 3 0 0 0 0.38026 1 11252 11252 25.155 12.927 1 1269000 28193 1084 18847 19217 33198 33198 0.07756740251988958 KPTDEKLREL 10 Unmodified _KPTDEKLREL_ 0 0 0 ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2350769042969 3 410.23471 1227.6823 0.42465 0.00017421 0.33872 0.00013896 0.76337 0.00031316 410.2348491334804 24.488 0.29492 21.66 21.519 21.814 -2.8273 34 16 3 0 0 0 0.1028 1 13307 13307 40.714 27.179 1 5475200 28194 1084 18847 19217 33199 33199 0.07756740251988958 KPTFGRSIL 9 Unmodified _KPTFGRSIL_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.805908203125 2 509.805834 1017.59712 0.29874 0.0001523 0.096899 4.94E-05 0.39564 0.0002017 509.8059308285475 38.144 0.3111 38.161 38.025 38.336 0.01704 34 13 3 0 0 0 0.094149 2 20245 20245;20344 34.402 3.7652 1 9024200 28195 3414 18848 19218 33200;33201 33200 0.08902039576844345 KPTFRAVEI 9 Unmodified _KPTFRAVEI_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2123107910156 3 354.209836 1059.60768 1.3829 0.00048984 2.5619 0.00090743 3.9448 0.0013973 354.21084926719004 43.508 0.55715 38.743 38.477 39.034 -4.7648 58 36 2 0 0 0 0.094149 1 26373 26373 26.021 1.0297 1 12208000 28196 4954 18849 19219 33202 33202 0.0802602223127451 KPTFRAVEI 9 Unmodified _KPTFRAVEI_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8118286132812 2 530.811116 1059.60768 0.68234 0.0003622 -0.21099 -0.000112 0.47135 0.0002502 530.810825057707 43.385 0.42493 38.62 38.525 38.95 -4.7648 46 27 2 0 0 0 0.047714 1 26452 26452 45.74 9.6129 1 14184000 28197 4954 18849 19219 33203 33203 0.0802602223127451 KPTHVVVTL 9 Unmodified _KPTHVVVTL_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.3084716796875 2 497.30821 992.601866 -0.28045 -0.00013947 0.35288 0.00017549 0.072436 3.6023E-05 497.3083452648889 34.377 0.25028 34.186 34.02 34.271 -0.19131 23 9 3 0 0 0 0.0086722 1 17933 17933 88.954 14.025 1 13603000 28198 5970 18850 19220 33204 33204 0.10526923719623937 KPTHVVVTL 9 Unmodified _KPTHVVVTL_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.3085632324219 2 497.30821 992.601866 1.2684 0.00063077 -0.9343 -0.00046464 0.33407 0.00016613 497.3078760456943 37.739 0.54542 33.37 33.071 33.616 -4.3689 93 32 4 0 0 0 0.0017364 1 22291 22291 134.3 52.405 1 86535000 28199 5970 18850 19220 33205 33205 0.10526923719623937 KPTHVVVTL 9 Unmodified _KPTHVVVTL_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 497.30821 992.601866 -0.45811 -0.00022782 -0.2194 -0.00010911 -0.67751 -0.00033693 497.3078936120821 34.249 0.1896 34.249 34.156 34.345 0 0.07374 -0.00017179 NaN 88.954 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 5053300 28200 5970 18850 19220 0.10526923719623937 KPTHVVVTL 9 Unmodified _KPTHVVVTL_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.30821 992.601866 0.26947 0.00013401 -0.40606 -0.00020194 -0.1366 -6.793E-05 497.3080236441624 34.062 0.21248 34.091 33.973 34.185 0.028934 -0.084424 -0.00035745 NaN 88.954 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2414900 28201 5970 18850 19220 0.10526923719623937 KPTIKHDRF 9 Unmodified _KPTIKHDRF_ 0 0 0 REV__ENSG00000197818|ENST00000361573|SLC9A8 REV__ENSG00000197818|ENST00000361573|SLC9A8 MSMS AL20221201_MKP_PDAC_01 4 571.3301391601562 2 571.327465 1140.64038 NaN NaN NaN NaN NaN NaN NaN 21.19 1 18.497 17.997 18.997 -2.693 0 0 0 0.7818 1 11322 11322 6.7232 0.51738 1 + 28202 23959 18851 19221 33206 33206 0.07568229354114919 KPTKSITCL 9 Carbamidomethyl (C) _KPTKSITC(Carbamidomethyl (C))L_ KPTKSITC(1)L KPTKSITC(59)L 0 1 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2965698242188 2 524.296985 1046.57942 0.32515 0.00017047 -1.3595 -0.00071278 -1.0344 -0.00054231 524.2960552505393 26.249 0.31219 23.298 23.169 23.481 -2.9511 31 17 2 0 0 0 0.024189 1 14422 14422 59.368 24.967 1 11699000 28203 10089 18852 19222 33207 33207 914 0.057989562596503674 KPTLPLRL 8 Unmodified _KPTLPLRL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.313720703125 2 469.313295 936.612037 0.85502 0.00040127 -0.34527 -0.00016204 0.50975 0.00023923 469.3132620127384 49.685 0.2916 49.636 49.492 49.784 -0.048824 21 14 2 0 0 0 0.66338 1 26874 26874 20.454 0 1 1332300 28204 6274 18853 19223 33208 33208 0.14119531444839595 KPTRKFAYL 9 Unmodified _KPTRKFAYL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000510957.1_1_22:31049909-31050715:-|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2251586914062 3 375.225598 1122.65496 0.21585 8.0993E-05 -0.28952 -0.00010863 -0.073664 -2.7641E-05 375.2254640858686 26.983 0.15378 27.012 26.91 27.064 0.028664 14 6 3 0 0 0 0.171 1 14000 14000 26.021 1.0297 1 9896000 28205 5424 18854 19224 33209 33209 0.09854301502264207 KPTRLNVF 8 Unmodified _KPTRLNVF_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;ENST00000421896.1_1_6:7482046-7482310:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7918701171875 2 487.792727 973.5709 0.38025 0.00018548 0.03273 1.5966E-05 0.41298 0.00020145 487.79241622777056 34.047 0.25374 34.076 33.931 34.185 0.028931 17 11 2 0 0 0 0.72664 1 17950 17950 14.838 0.25658 1 1172700 28206 2240 18855 19225 33210 33210 0.0830577040536582 KPTSERKVSL 10 Unmodified _KPTSERKVSL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2283325195312 3 382.227667 1143.66117 0.66213 0.00025308 0.53904 0.00020604 1.2012 0.00045912 382.2278288619393 16.699 0.24805 14.142 14.018 14.266 -2.557 94 38 3 0 0 0 0.42967 1 8733 8733 19.987 5.7687 1 11345000 28207 1311 18856 19226 33211 33211 0.09508774943151366 KPTSTKIIHLY 11 Unmodified _KPTSTKIIHLY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2580871582031 3 434.258967 1299.75507 -0.011648 -5.0582E-06 -0.44752 -0.00019434 -0.45916 -0.0001994 434.2588970499022 32.16 0.22029 32.189 32.058 32.279 0.029747 21 9 3 0 0 0 0.28407 1 16854 16854 32.898 29.578 1 3213400 28208 10367 18857 19227 33212 33212 0.11718494045408079 KPTVSLKKLEV 11 Unmodified _KPTVSLKKLEV_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.5982666015625 3 414.599101 1240.77547 1.5003 0.00062202 -2.8606 -0.001186 -1.3603 -0.00056397 414.59770278918853 101.1 0.1244 94.927 94.85 94.974 -6.1757 16 6 3 0 0 0 0.7326 1 67780 67780 0.40827 0 1 34660000 28209 9717 18858 19228 33213 33213 0.16471664705204603 KPVAPRIF 8 Unmodified _KPVAPRIF_ 0 0 0 REV__ENSG00000121851|ENST00000369314|POLR3GL REV__ENSG00000121851|ENST00000369314|POLR3GL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5641174316406 2 464.292362 926.570172 NaN NaN NaN NaN NaN NaN NaN 27.809 1 27.762 27.262 28.262 -0.046408 0 0 0 0.94061 1 14341 14341 12.532 4.6214 1 + 28210 19313 18859 19229 33214 33214 0.10394975756310032 KPVDKYIEY 9 Unmodified _KPVDKYIEY_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.80810546875 2 577.808239 1153.60193 NaN NaN NaN NaN NaN NaN NaN 32.381 1 32.381 31.881 32.881 0 0 0 0 0.47914 1 16914 16914 16.566 4.3252 1 28211 8321 18860 19230 33215 33215 0.03126878928947008 KPVEDILTY 9 Unmodified _KPVEDILTY_ 0 0 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2949829101562 2 539.294965 1076.57538 0.65737 0.00035452 -1.3357 -0.00072033 -0.67831 -0.00036581 539.2940989234868 51.443 0.27391 51.443 51.348 51.622 0 42 12 4 0 0 0 0.032796 1 28388 28388 53.833 5.4869 1 85297000 28212 7355 18861 19231 33216 33216 0.04015190037625871 KPVEDILTY 9 Unmodified _KPVEDILTY_ 0 0 0 nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;nc|ENSG00000165525|O60524-5|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF nc|ENSG00000165525|O60524-4|NEMF nc|ENSG00000165525|O60524-4|NEMF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2952880859375 2 539.294965 1076.57538 0.3334 0.0001798 -1.7561 -0.00094707 -1.4227 -0.00076727 539.2946923740143 57.85 0.5438 51.823 51.535 52.078 -6.0275 54 30 2 0 0 0 0.044011 1 37009 37009 47.749 7.7914 1 179800000 28213 7355 18861 19231 33217 33217 0.04015190037625871 KPVEDKDAVAF 11 Unmodified _KPVEDKDAVAF_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8836364746094 3 406.883677 1217.6292 -0.75512 -0.00030725 0.46805 0.00019044 -0.28707 -0.00011681 406.8838361174707 30.107 0.29152 30.107 29.931 30.222 0 41 13 4 0 0 0 0.08701 2 15580 15580;15681 48.561 26.971 1 14679000 28214 2314 18862 19232 33218;33219 33218 0.02909362469313237 KPVEDKDAVAF 11 Unmodified _KPVEDKDAVAF_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8226928710938 2 609.821878 1217.6292 -0.67413 -0.0004111 0.26196 0.00015975 -0.41218 -0.00025135 609.8220655600906 30.095 0.29008 30.095 29.953 30.243 0 40 13 4 0 0 0 0.00029288 1 15587 15587 90.964 67.175 1 17297000 28215 2314 18862 19232 33220 33220 0.02909362469313237 KPVEDKDAVAF 11 Unmodified _KPVEDKDAVAF_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8862609863281 3 406.883677 1217.6292 1.0435 0.00042459 0.10206 4.1527E-05 1.1456 0.00046611 406.8836642581228 33.38 0.36594 29.394 29.223 29.589 -3.9853 33 20 2 0 0 0 0.33612 2 19081 19081;19225 20.411 8.1833 1 53277000 28216 2314 18862 19232 33221;33222 33221 0.02909362469313237 KPVEDKDAVAF 11 Unmodified _KPVEDKDAVAF_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8223876953125 2 609.821878 1217.6292 0.78819 0.00048066 0.074066 4.5167E-05 0.86226 0.00052583 609.822092036176 33.375 0.31233 29.39 29.242 29.555 -3.9853 25 17 2 0 0 0 1.2053E-06 1 19113 19113 103.69 68.759 1 21861000 28217 2314 18862 19232 33223 33223 0.02909362469313237 KPVEGYDISF 10 Unmodified _KPVEGYDISF_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-4|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7897338867188 2 577.790047 1153.56554 0.85342 0.0004931 -0.8491 -0.0004906 0.0043132 2.4921E-06 577.7895613243594 54.143 0.38656 54.143 53.923 54.309 0 54 17 4 0 0 0 0.06987 2 29990 29990;30102 53.404 15.43 1 45228000 28218 10683 18863 19233 33224;33225 33224 -0.0050999796776523 KPVEGYDISF 10 Unmodified _KPVEGYDISF_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-4|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7909545898438 2 577.790047 1153.56554 0.13744 7.9411E-05 -0.21903 -0.00012655 -0.08159 -4.7142E-05 577.7898162650033 54.729 0.29637 54.262 54.084 54.381 -0.46664 33 14 3 0 0 0 0.035244 1 29649 29649 65.474 25.524 1 12029000 28219 10683 18863 19233 33226 33226 -0.0050999796776523 KPVEGYDISF 10 Unmodified _KPVEGYDISF_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-4|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7904052734375 2 577.790047 1153.56554 1.0395 0.00060062 -1.1167 -0.00064519 -0.077137 -4.4569E-05 577.7899487069145 60.387 0.58952 54.272 54.018 54.607 -6.1147 47 30 2 0 0 0 0.021614 2 38925 38801;38925 74.2 34.25 1 80966000 28220 10683 18863 19233 33227;33228 33228 -0.0050999796776523 KPVEGYDISF 10 Unmodified _KPVEGYDISF_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;nc|ENSG00000241553|P59998-4|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 577.790047 1153.56554 0.31613 0.00018266 0.43485 0.00025125 0.75098 0.00043391 577.7902270753501 54.361 0.15641 54.294 54.162 54.319 -0.066936 0.050766 0.0012551 NaN 74.2 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1773200 28221 10683 18863 19233 -0.0050999796776523 KPVEIIRHY 9 Unmodified _KPVEIIRHY_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5612182617188 3 385.560869 1153.66078 0.94015 0.00036248 -0.94841 -0.00036567 -0.0082692 -3.1883E-06 385.5603998327042 26.777 0.41713 23.74 23.456 23.873 -3.0365 47 21 3 0 0 0 0.078314 1 14775 14775 49.527 37.287 1 16208000 28222 883 18864 19234 33229 33229 0.09009400013951563 KPVEIKTL 8 Unmodified _KPVEIKTL_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1;REV__ENSG00000047617|ENST00000682330|ANO2 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MSMS AL20221201_MKP_PDAC_01 4 464.2978515625 2 464.29731 926.580068 NaN NaN NaN NaN NaN NaN NaN 104.74 1 98.56 98.06 99.06 -6.1757 0 0 0 0.97444 1 70119 70119 2.3027 0 1 + 28223 19802;17230 18865 19235 33230 33230 0.11384118971056978 KPVEKNYAF 9 Unmodified _KPVEKNYAF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2962036132812 2 548.295299 1094.57605 -0.19512 -0.00010698 0.47737 0.00026174 0.28225 0.00015475 548.2953293062842 25.191 0.32549 25.191 25.02 25.346 0 37 16 3 0 0 0 0.2324 1 12862 12862 20.415 6.5085 1 2254300 28224 1995 18866 19236 33231 33231 0.032540294773070855 KPVEKNYAF 9 Unmodified _KPVEKNYAF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2951049804688 2 548.295299 1094.57605 0.39802 0.00021823 -0.83245 -0.00045643 -0.43442 -0.00023819 548.2948042474999 27.454 0.28008 24.418 24.239 24.519 -3.0365 22 13 2 0 0 0 0.0082981 1 15168 15168 96.936 53.077 1 12038000 28225 1995 18866 19236 33232 33232 0.032540294773070855 KPVIPAAVL 9 Unmodified _KPVIPAAVL_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.3026123046875 2 454.302396 906.590239 1.1059 0.00050239 -0.43463 -0.00019746 0.67122 0.00030494 454.30222716336516 57.589 0.1961 57.523 57.438 57.634 -0.066036 14 9 2 0 0 0 0.23158 1 31369 31369 20.454 6.9457 1 1281800 28226 6528 18867 19237 33233 33233 0.1332072669625859 KPVIPAAVL 9 Unmodified _KPVIPAAVL_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 454.302396 906.590239 0.23194 0.00010537 0.14836 6.7402E-05 0.3803 0.00017277 454.302432350669 57.982 0.24958 57.492 57.369 57.619 -0.48974 -0.015298 0.0001602 NaN 20.454 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2342600 28227 6528 18867 19237 0.1332072669625859 KPVKARWRERN 11 Unmodified _KPVKARWRERN_ 0 0 0 REV__nc|ENSG00000154678|Q14123-2|PDE1C REV__nc|ENSG00000154678|Q14123-2|PDE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.6157836914062 3 480.616259 1438.82695 -0.18755 -9.0139E-05 -0.19342 -9.2961E-05 -0.38097 -0.0001831 480.6160568677585 36.926 0.32126 36.948 36.727 37.048 0.021545 35 14 3 0 0 0 0.73349 1 19557 19557 1.1098 0.096179 1 3038400 + 28228 21239 18868 19238 33234 33234 0.1250884624248556 KPVKGAKAQ 9 Unmodified _KPVKGAKAQ_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7935791015625 2 463.792727 925.5709 NaN NaN NaN NaN NaN NaN NaN 27.877 1 27.831 27.331 28.331 -0.046408 0 0 0 0.6557 1 14377 14377 10.824 0.75 1 + 28229 22046 18869 19239 33235 33235 0.1051377040537318 KPVNIFWAL 9 Unmodified _KPVNIFWAL_ 0 0 0 ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2163696289062 3 363.21481 1086.6226 0.96695 0.00035121 2.2107 0.00080296 3.1777 0.0011542 363.2145671223101 22.675 0.75051 19.897 19.67 20.421 -2.7784 73 53 3 0 0 0 0.39863 1 12176 12176 8.1555 0 1 7326700 28230 4575 18870 19240 33236 33236 0.08275514099273096 KPVNRISL 8 Unmodified _KPVNRISL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7930908203125 2 463.792727 925.5709 1.0687 0.00049563 -0.32058 -0.00014868 0.74808 0.00034695 463.79251047749426 30.527 0.39623 27.03 26.797 27.193 -3.497 50 19 4 0 0 0 0.27285 2 17127 17127;17249 58.679 13.864 1 77768000 28231 2059 18871 19241 33237;33238 33237 0.1051377040537318 KPVPVGGG 8 Unmodified _KPVPVGGG_ 0 0 0 REV__ENST00000470976.1_1_3:73045993-73110212:+|nuORF REV__ENST00000470976.1_1_3:73045993-73110212:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.714599609375 2 355.713414 709.412274 NaN NaN NaN NaN NaN NaN NaN 35.113 1 35.14 34.64 35.64 0.027401 0 0 0 0.97444 1 18541 18541 0 0 1 + 28232 27485 18872 19242 33239 33239 0.04594476497106825 KPVRVVRNVK 10 Unmodified _KPVRVVRNVK_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MSMS AL20221201_MKP_PDAC_01 4 597.8925170898438 2 597.893306 1193.77206 NaN NaN NaN NaN NaN NaN NaN 107.45 1 101.27 100.77 101.77 -6.1757 0 0 0 1.0024 1 71866 71866 0.40072 0.093686 1 28233 10914 18873 19243 33240 33240 0.18292459441863684 KPVSVAISL 9 Unmodified _KPVSVAISL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2896423339844 2 457.289485 912.564418 0.10183 4.6564E-05 0.32585 0.00014901 0.42768 0.00019557 457.2895695492965 54.189 0.25499 53.722 53.586 53.841 -0.46664 26 12 3 0 0 0 0.025842 1 29366 29366 57.722 11.701 1 4365900 28234 3945 18874 19244 33241 33241 0.10463832454001931 KPVVLDKKLS 10 Unmodified _KPVVLDKKLS_ 0 0 0 REV__ENSG00000282815|ENST00000695840|TEX13C REV__ENSG00000282815|ENST00000695840|TEX13C MSMS AL20221201_MKP_PDAC_01 4 376.2452087402344 3 376.244658 1125.71214 NaN NaN NaN NaN NaN NaN NaN 15.543 1 13.015 12.515 13.515 -2.5273 0 0 0 0.9731 1 7984 7984 3.5871 0 1 + 28235 24686 18875 19245 33242 33242 0.1543172398801289 KPVVLLQG 8 Unmodified _KPVVLLQG_ 0 0 0 ENSG00000117479|ENST00000236137|SLC19A2 ENSG00000117479|ENST00000236137|SLC19A2 ENSG00000117479|ENST00000236137|SLC19A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.5506591796875 1 853.550565 852.543289 1.4323 0.0012226 0.70077 0.00059814 2.1331 0.0018207 853.5509790223548 108.11 2.1454 101.94 100.83 102.97 -6.1757 571 382 2 0 0 0 0.80992 1 71854 71854 0.69038 0 1 5654400 28236 3308 18876 19246 33243 33243 0.11111867145154974 KPVVNVSY 8 Unmodified _KPVVNVSY_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5;ENST00000468749.1_1_10:112262519-112263241:+|nuORF ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2587280273438 2 453.258185 904.501818 -0.24597 -0.00011149 1.205 0.00054617 0.95901 0.00043468 453.25881914192837 34.515 0.3305 34.515 34.384 34.714 0 43 16 3 0 0 0 0.3408 1 18276 18276 50.855 12.704 1 4336900 28237 5029 18877 19247 33244 33244 0.04574686385808491 KPVVNVSY 8 Unmodified _KPVVNVSY_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5;ENST00000468749.1_1_10:112262519-112263241:+|nuORF ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2596435546875 2 453.258185 904.501818 0.98873 0.00044815 0.50221 0.00022763 1.4909 0.00067578 453.2584327490484 39.402 0.40297 34.951 34.72 35.123 -4.4509 41 24 2 0 0 0 0.21583 2 23306 23306;23435 67.344 23.486 1 15752000 28238 5029 18877 19247 33245;33246 33245 0.04574686385808491 KPVYPGQTL 9 Unmodified _KPVYPGQTL_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7847595214844 2 501.784567 1001.55458 -0.29022 -0.00014563 0.26272 0.00013183 -0.027498 -1.3798E-05 501.78484455951855 34.339 0.27031 34.339 34.19 34.46 0 33 13 3 0 0 0 0.0071894 1 18051 18051 111.29 47.051 1 12946000 28239 4536 18878 19248 33247 33247 0.053866444486288856 KPVYPGQTL 9 Unmodified _KPVYPGQTL_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.783935546875 2 501.784567 1001.55458 -0.58135 -0.00029171 -0.20765 -0.0001042 -0.789 -0.00039591 501.78435535557014 34.492 0.24255 34.3 34.174 34.417 -0.19131 24 10 3 0 0 0 0.0082353 1 18022 18022 96.111 21.182 1 8932600 28240 4536 18878 19248 33248 33248 0.053866444486288856 KPWALTFSY 9 Unmodified _KPWALTFSY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.793701171875 2 556.792392 1111.57023 1.4194 0.00079031 1.8811 0.0010474 3.3005 0.0018377 556.7935883562149 71.132 0.42533 71.167 70.936 71.361 0.035515 54 18 4 0 0 0 0.020973 2 39113 39113;39214 62.573 37.173 1 8805300 28241 6042 18879 19249 33249;33250 33249 0.018909309656464757 KPWALTFSY 9 Unmodified _KPWALTFSY_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7930297851562 2 556.792392 1111.57023 1.4217 0.00079161 0.22466 0.00012509 1.6464 0.0009167 556.7925685510621 88.165 0.54498 81.99 81.747 82.292 -6.1757 50 30 2 0 0 0 0.044011 2 58169 58048;58169 47.749 23.728 1 24469000 28242 6042 18879 19249 33251;33252 33252 0.018909309656464757 KPWEEARSF 9 Unmodified _KPWEEARSF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8617553710938 3 383.861096 1148.56146 NaN NaN NaN NaN NaN NaN NaN 31.653 1 31.524 31.024 32.024 -0.12915 0 0 0 0.40636 1 16464 16464 19.626 15.436 1 28243 6681 18880 19250 33253 33253 -0.006880426708221421 KPWEEARSF 9 Unmodified _KPWEEARSF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8617248535156 3 383.861096 1148.56146 1.034 0.0003969 3.3493 0.0012857 4.3832 0.0016826 383.8611152097749 35.362 0.20945 31.267 31.174 31.384 -4.0951 17 12 2 0 0 0 0.024507 1 20485 20485 59.052 30.558 1 8758500 28244 6681 18880 19250 33254 33254 -0.006880426708221421 KPWMEKNQTF 10 Unmodified _KPWMEKNQTF_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MSMS AL20221201_MKP_PDAC_01 4 436.8858337402344 3 436.885024 1307.63324 NaN NaN NaN NaN NaN NaN NaN 36.262 1 32.07 31.57 32.57 -4.1928 0 0 0 0.43781 1 21161 21161 29.281 17.786 1 28245 5064 18881 19251 33255 33255 -0.008268713086181378 KPYAFDRVF 9 Unmodified _KPYAFDRVF_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8040771484375 2 571.803291 1141.59203 0.46917 0.00026827 0.046131 2.6378E-05 0.5153 0.00029465 571.8031519018969 48.908 0.30714 48.536 48.407 48.714 -0.37172 33 15 3 0 0 0 0.10134 1 26248 26248 34.932 13.395 1 3423400 28246 8019 18882 19252 33256 33256 0.026897357142161127 KPYAFDRVF 9 Unmodified _KPYAFDRVF_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8726501464844 3 381.537953 1141.59203 0.31199 0.00011903 0.78026 0.0002977 1.0922 0.00041673 381.5382978417344 48.911 0.28629 48.539 48.407 48.693 -0.37172 36 14 3 0 0 0 0.022461 1 26257 26257 61.09 43.647 1 4673600 28247 8019 18882 19252 33257 33257 0.026897357142161127 KPYAFDRVF 9 Unmodified _KPYAFDRVF_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8031616210938 2 571.803291 1141.59203 0.26799 0.00015324 0.48043 0.00027471 0.74842 0.00042795 571.8035228210698 48.6 0.33882 48.557 48.395 48.734 -0.04369 49 16 4 0 0 0 0.11412 2 26181 26181;26298 33.445 24.699 1 16356000 28248 8019 18882 19252 33258;33259 33258 0.026897357142161127 KPYAFDRVF 9 Unmodified _KPYAFDRVF_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5373229980469 3 381.537953 1141.59203 0.28015 0.00010689 -0.0079682 -3.0402E-06 0.27219 0.00010385 381.53793508301385 48.605 0.33757 48.562 48.377 48.714 -0.04369 47 16 4 0 0 0 0.052231 2 26189 26189;26299 44.392 31.519 1 15364000 28249 8019 18882 19252 33260;33261 33260 0.026897357142161127 KPYAFDRVF 9 Unmodified _KPYAFDRVF_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5377197265625 3 381.537953 1141.59203 1.4043 0.00053581 -0.48945 -0.00018675 0.91489 0.00034907 381.5376115768164 53.522 0.3655 47.718 47.498 47.863 -5.8042 40 23 2 0 0 0 0.037118 2 33777 33777;33919 51.488 34.045 1 31379000 28250 8019 18882 19252 33262;33263 33262 0.026897357142161127 KPYEKVRIY 9 Unmodified _KPYEKVRIY_ 0 0 0 nc|ENSG00000001631|O00522-2|KRIT1;ENST00000475770.5_1_7:91830052-91864980:-|nuORF;nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1 nc|ENSG00000001631|O00522-2|KRIT1 nc|ENSG00000001631|O00522-2|KRIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2330627441406 3 399.232641 1194.67609 0.52669 0.00021027 0.19393 7.7423E-05 0.72062 0.0002877 399.2327052405896 26.511 0.24892 23.56 23.39 23.638 -2.9511 23 12 2 0 0 0 0.014417 1 14600 14600 55.235 35.609 1 6546800 28251 260 18883 19253 33264 33264 0.08654266811140587 KPYEYQEC 8 Unmodified _KPYEYQEC_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 ENSG00000171295|ENST00000304060|ZNF440 MSMS AL20221201_MKP_PDAC_01 4 353.8209533691406 3 353.819909 1058.4379 NaN NaN NaN NaN NaN NaN NaN 11.956 1 9.4741 8.9741 9.9741 -2.482 0 0 0 0.97444 1 6023 6023 0.40072 0 1 28252 8085 18884 19254 33265 33265 -0.0889846183345071 KPYGGSGPLY 10 Unmodified _KPYGGSGPLY_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MSMS AL20221201_MKP_PDAC_01 4 519.7652587890625 2 519.766374 1037.5182 NaN NaN NaN NaN NaN NaN NaN 37.131 1 32.847 32.347 33.347 -4.2835 0 0 0 0.12081 1 21763 21763 49.554 13.51 1 28253 8162 18885 19255 33266 33266 0.0009376755190260155 KPYHANYSPI 10 Unmodified _KPYHANYSPI_ 0 0 0 REV__nc|ENSG00000057657|O75626-2|PRDM1 REV__nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5391540527344 3 397.204862 1188.59276 -0.49016 -0.00019469 0.76935 0.00030559 0.27919 0.0001109 397.53947200675486 20.174 0.14939 20.174 20.106 20.255 0 14 9 2 0 0 0 0.69917 1 10150 10150 1.4551 0.75745 1 601340 + 28254 17304 18886 19256 33267 33267 0.006005303632719006 KPYHANYSPI 10 Unmodified _KPYHANYSPI_ 0 0 0 REV__nc|ENSG00000057657|O75626-2|PRDM1 REV__nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 397.204862 1188.59276 -0.49016 -0.00019469 0.76935 0.00030559 0.27919 0.0001109 397.53947200675486 20.174 0.14939 20.174 20.106 20.255 0 0 0 NaN 1.4551 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 601340 + 28255 17304 18886 19256 0.006005303632719006 KPYHGRGAPL 10 Unmodified _KPYHGRGAPL_ 0 0 0 ENST00000416602.6_1_7:66767701-66771051:+|nuORF ENST00000416602.6_1_7:66767701-66771051:+|nuORF ENST00000416602.6_1_7:66767701-66771051:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.8751525878906 3 365.873447 1094.59851 NaN NaN NaN NaN NaN NaN NaN 16.21 1 13.654 13.154 14.154 -2.557 0 0 0 0.7417 1 8380 8380 12.873 0 1 28256 13048 18887 19257 33268 33268 0.05499673665599403 KPYNPILGETF 11 Unmodified _KPYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.8404541015625 2 639.840071 1277.66559 -0.056061 -3.587E-05 -0.33893 -0.00021686 -0.39499 -0.00025273 639.8400261789657 60.004 0.31884 59.513 59.352 59.671 -0.49079 36 15 3 0 0 0 0.08701 2 32714 32606;32714 43.982 0 1 9744700 28257 1576;528 18888 19258 33269;33270 33270 0.037862393660361704 KPYNPILGETF 11 Unmodified _KPYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8378295898438 2 639.840071 1277.66559 0.32966 0.00021093 -2.4491 -0.0015671 -2.1195 -0.0013561 639.8385715058404 59.637 0.17569 59.584 59.499 59.675 -0.053062 14 8 2 0 0 0 0.065225 1 32519 32519 47.594 0 1 2698700 28258 1576;528 18888 19258 33271 33271 0.037862393660361704 KPYNPILGETF 11 Unmodified _KPYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.841064453125 2 639.840071 1277.66559 0.089127 5.7027E-05 0.37231 0.00023822 0.46143 0.00029524 639.8403125236479 65.514 0.494 59.338 59 59.494 -6.1757 47 27 2 0 0 0 1.3287E-06 2 42436 42436;42572 103.42 0 1 18852000 28259 1576;528 18888 19258 33272;33273 33272 0.037862393660361704 KPYPEDPAVY 10 Unmodified _KPYPEDPAVY_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7910766601562 2 589.790047 1177.56554 -0.062223 -3.6698E-05 0.047992 2.8305E-05 -0.014231 -8.3931E-06 589.7898243948201 35.747 0.34212 35.747 35.554 35.896 0 39 16 3 0 0 0 0.20195 1 18863 18863 33.445 16.332 1 6974100 28260 16057 18889 19259 33274 33274 -0.016139979677518568 KPYPEDPAVY 10 Unmodified _KPYPEDPAVY_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-5|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7911987304688 2 589.790047 1177.56554 0.97598 0.00057562 0.66075 0.00038971 1.6367 0.00096533 589.7904308210829 40.76 0.34181 36.23 36.064 36.405 -4.5294 37 20 2 0 0 0 0.20195 1 24334 24334 33.445 18.196 1 9369100 28261 16057 18889 19259 33275 33275 -0.016139979677518568 KPYRKAPPEHR 11 Unmodified _KPYRKAPPEHR_ 0 0 0 nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1;nc|ENSG00000137221|Q5JTD0-3|TJAP1;ENST00000483640.5_1_6:43466739-43470406:+|nuORF nc|ENSG00000137221|Q5JTD0-2|TJAP1 nc|ENSG00000137221|Q5JTD0-2|TJAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.5951843261719 3 460.261594 1377.76295 0.4505 0.00020735 -0.33256 -0.00015307 0.11794 5.4284E-05 460.26139511489697 28.536 0.25697 28.474 28.345 28.602 -0.062159 29 9 4 0 0 0 0.3535 1 14707 14707 23.964 14.2 1 11291000 28262 4914 18890 19260 33276 33276 0.0891806608551633 KPYRKAPPEHR 11 Unmodified _KPYRKAPPEHR_ 0 0 0 nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1;nc|ENSG00000137221|Q5JTD0-3|TJAP1;ENST00000483640.5_1_6:43466739-43470406:+|nuORF nc|ENSG00000137221|Q5JTD0-2|TJAP1 nc|ENSG00000137221|Q5JTD0-2|TJAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2604370117188 3 460.261594 1377.76295 0.65761 0.00030267 -0.64786 -0.00029819 0.009742 4.4839E-06 460.26128938222814 31.813 0.45051 28.118 27.908 28.358 -3.6958 74 24 4 0 0 0 0.37147 2 17972 17972;18101 23.016 10.788 1 165460000 28263 4914 18890 19260 33277;33278 33277 0.0891806608551633 KPYRKAPPEHR 11 Unmodified _KPYRKAPPEHR_ 0 0 0 nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1;nc|ENSG00000137221|Q5JTD0-3|TJAP1;ENST00000483640.5_1_6:43466739-43470406:+|nuORF nc|ENSG00000137221|Q5JTD0-2|TJAP1 nc|ENSG00000137221|Q5JTD0-2|TJAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 460.261594 1377.76295 0.31592 0.00014541 0.18735 8.6228E-05 0.50327 0.00023163 460.2617808531885 28.442 0.26256 28.472 28.332 28.595 0.029564 -0.059811 0.0007287 NaN 23.964 32 10 4 NaN NaN NaN NaN 0 NaN NaN 0 19049000 28264 4914 18890 19260 0.0891806608551633 KPYVCDKFYK 10 Unmodified _KPYVCDKFYK_ 0 0 0 nc|ENSG00000011332|Q92782-1|DPF1 nc|ENSG00000011332|Q92782-1|DPF1 nc|ENSG00000011332|Q92782-1|DPF1 MSMS AL20221201_MKP_PDAC_01 4 430.8892822265625 3 430.889886 1289.64783 NaN NaN NaN NaN NaN NaN NaN 19.928 1 17.271 16.771 17.771 -2.6564 0 0 0 0.97556 1 10588 10588 3.3196 2.1048 1 28265 16020 18891 19261 33279 33279 0.014592008395084122 KPYVDGKGREL 11 Unmodified _KPYVDGKGREL_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2338256835938 3 421.234822 1260.68264 NaN NaN NaN NaN NaN NaN NaN 18.222 1 18.222 17.722 18.722 0 0 0 0 0.9406 1 9042 9042 0.84494 0 1 28266 9990 18892 19262 33280 33280 0.06272159971854308 KPYVDLQAY 9 Unmodified _KPYVDLQAY_ 0 0 0 ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1 ENST00000488068.5_1_7:143088552-143095662:-|nuORF ENST00000488068.5_1_7:143088552-143095662:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7875366210938 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 46.476 1 46.476 45.976 46.976 0 0 0 0 0.059498 1 25404 25404 53.833 23.196 1 28267 5807 18893 19263 33281 33281 0.016103232404248047 KPYVDLQAY 9 Unmodified _KPYVDLQAY_ 0 0 0 ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1 ENST00000488068.5_1_7:143088552-143095662:-|nuORF ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7891845703125 2 548.787307 1095.56006 0.55276 0.00030335 0.86921 0.00047701 1.422 0.00078036 548.787956090242 46.584 0.43262 46.247 46.149 46.582 -0.33664 38 21 2 0 0 0 0.020973 1 25057 25057 62.573 16.552 1 4274900 28268 5807 18893 19263 33282 33282 0.016103232404248047 KQAAKKVAPL 10 Unmodified _KQAAKKVAPL_ 0 0 0 ENSG00000206181|ENST00000332567|ELOA2 ENSG00000206181|ENST00000332567|ELOA2 ENSG00000206181|ENST00000332567|ELOA2 MSMS AL20221201_MKP_PDAC_01 4 527.3401489257812 2 527.342584 1052.67061 NaN NaN NaN NaN NaN NaN NaN 104.3 1 98.127 97.627 98.627 -6.1757 0 0 0 0.99091 1 69862 69862 1.6526 0.17072 1 28269 10394 18894 19264 33283 33283 0.1463858801932929 KQAGSKKG 8 Unmodified _KQAGSKKG_ 0 0 0 REV__ENSG00000248712|ENST00000503566|CCDC153 REV__ENSG00000248712|ENST00000503566|CCDC153 MSMS AL20221201_MKP_PDAC_01 4 402.2408447265625 2 402.240327 802.466101 NaN NaN NaN NaN NaN NaN NaN 12.409 1 9.9271 9.4271 10.427 -2.482 0 0 0 0.94494 1 6274 6274 11.64 0.81637 1 + 28270 24489 18895 19265 33284 33284 0.05696648928801551 KQALKYFNL 9 Unmodified _KQALKYFNL_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.826904296875 2 562.826766 1123.63898 0.66262 0.00037294 -0.13533 -7.6165E-05 0.5273 0.00029678 562.8267221374556 48.93 0.33445 48.886 48.714 49.049 -0.04369 53 16 4 0 0 0 0.0088668 2 26373 26373;26489 107.19 65.347 1 51844000 28271 1056 18896 19266 33285;33286 33285 0.08210595265359188 KQALKYFNL 9 Unmodified _KQALKYFNL_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5537109375 3 375.553603 1123.63898 0.20847 7.8291E-05 -0.02914 -1.0944E-05 0.17933 6.7347E-05 375.5535932641418 48.922 0.35886 48.879 48.734 49.093 -0.04369 55 17 4 0 0 0 0.036857 1 26387 26387 51.63 27.84 1 38182000 28272 1056 18896 19266 33287 33287 0.08210595265359188 KQALKYFNL 9 Unmodified _KQALKYFNL_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8280639648438 2 562.826766 1123.63898 1.1216 0.00063127 0.090207 5.0771E-05 1.2118 0.00068204 562.826824871498 53.506 0.41257 47.701 47.467 47.879 -5.8042 69 26 3 0 0 0 0.0082981 2 33731 33731;33866 96.111 54.271 1 145610000 28273 1056 18896 19266 33288;33289 33288 0.08210595265359188 KQALKYFNL 9 Unmodified _KQALKYFNL_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.553466796875 3 375.553603 1123.63898 1.4535 0.00054585 -0.524 -0.00019679 0.92945 0.00034906 375.55335412175555 53.513 0.45139 47.709 47.467 47.918 -5.8042 60 28 3 0 0 0 0.062454 2 33742 33742;33879 41.956 19.297 1 64435000 28274 1056 18896 19266 33290;33291 33290 0.08210595265359188 KQALQRYS 8 Unmodified _KQALQRYS_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.27880859375 2 497.277441 992.540328 1.0472 0.00052073 -0.16339 -8.1248E-05 0.88377 0.00043948 497.2771985286578 53.5 0.40154 47.696 47.498 47.899 -5.8042 35 25 2 0 0 0 0.64853 1 33807 33807 21.747 1.293 1 26466000 28275 1777 18897 19267 33292 33292 0.04375992020322883 KQAMRTIYN 9 Unmodified _KQAMRTIYN_ 0 0 0 REV__ENSG00000110057|ENST00000227471|UNC93B1 REV__ENSG00000110057|ENST00000227471|UNC93B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.2177124023438 3 375.534214 1123.58081 1.6632 0.00062457 0.75948 0.00028521 2.4226 0.00090978 375.5344896207709 20.382 0.21202 17.689 17.608 17.82 -2.693 19 10 2 0 0 0 0.20139 1 10928 10928 7.1017 0 1 2329500 + 28276 18687 18898 19268 33293 33293 0.023965903484395312 KQASPREEL 9 Unmodified _KQASPREEL_ 0 0 0 nc|ENSG00000167851|Q9UGN4-4|CD300A nc|ENSG00000167851|Q9UGN4-4|CD300A nc|ENSG00000167851|Q9UGN4-4|CD300A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2486572265625 2 529.285463 1056.55637 0.25839 0.00013676 -3.5447 -0.0018762 -3.2863 -0.0017394 529.2841884707176 66.991 0.13129 66.507 66.459 66.59 -0.48323 9 5 2 0 0 0 0.20358 1 36635 36635 10.074 2.1638 1 977830 28277 16362 18899 19269 33294 33294 0.030356534665770596 KQCKDYYEI 9 Carbamidomethyl (C) _KQC(Carbamidomethyl (C))KDYYEI_ KQC(1)KDYYEI KQC(100)KDYYEI 0 1 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MSMS AL20221201_MKP_PDAC_01 4 623.792236328125 2 623.792263 1245.56997 NaN NaN NaN NaN NaN NaN NaN 31.767 1 28.072 27.572 28.572 -3.6958 0 0 0 0.0067126 1 18021 18021 99.755 65.354 1 28278 5958 18900 19270 33295 33295 600 -0.0429885681653559 KQCQYKDTLP 10 Unmodified _KQCQYKDTLP_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS AL20221201_MKP_PDAC_01 4 612.30712890625 2 612.308081 1222.60161 NaN NaN NaN NaN NaN NaN NaN 37.845 1 33.477 32.977 33.977 -4.3689 0 0 0 0.85122 1 22249 22249 10.074 0 1 28279 7963 18901 19271 33296 33296 -0.0007886406253874156 KQDAYTCDQ 9 Unmodified _KQDAYTCDQ_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.3065185546875 2 536.224214 1070.43387 0.2254 0.00012087 -2.5504 -0.0013676 -2.325 -0.0012467 536.2227576705087 37.603 0.25002 37.603 37.493 37.743 0 29 12 3 0 0 0 0.209 1 20058 20058 7.2892 0.56607 1 3652200 + 28280 20254 18902 19272 33297 33297 -0.0985255132718521 KQDIQKKHT 9 Unmodified _KQDIQKKHT_ 0 0 0 REV__ENST00000558735.1_1_15:44581347-44620963:+|nuORF REV__ENST00000558735.1_1_15:44581347-44620963:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8240356445312 2 563.32238 1124.63021 4.6804 0.0026366 0.97308 0.00054815 5.6535 0.0031847 563.3231886672738 99.007 0.16582 98.979 98.863 99.028 -0.028282 8 5 2 0 0 0 0.19891 1 54991 54991 11.64 3.4848 1 1961900 + 28281 22143 18903 19273 33298 33298 0.07287621628893248 KQDPPVTH 8 Unmodified _KQDPPVTH_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.24658203125 2 461.243067 920.47158 NaN NaN NaN NaN NaN NaN NaN 18.169 1 18.169 17.669 18.669 0 0 0 0 0.94061 1 9013 9013 12.532 0 1 28282 4364 18904 19274 33299 33299 0.00816327720622212 KQEKSELSRF 10 Unmodified _KQEKSELSRF_ 0 0 0 REV__nc|ENSG00000169758|Q2M3C6-2|TMEM266 REV__nc|ENSG00000169758|Q2M3C6-2|TMEM266 MSMS AL20221201_MKP_PDAC_01 4 417.8973388671875 3 417.894577 1250.6619 NaN NaN NaN NaN NaN NaN NaN 22.885 1 20.106 19.606 20.606 -2.7784 0 0 0 0.94014 1 12342 12342 3.3196 0.24738 1 + 28283 22423 18905 19275 33300 33300 0.046595695921723745 KQETRQDELE 10 Unmodified _KQETRQDELE_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8772277832031 3 425.877363 1274.61026 1.3028 0.00055484 -1.3622 -0.00058012 -0.059344 -2.5273E-05 425.8768140955656 19.812 0.54977 17.155 16.955 17.505 -2.6564 83 34 3 0 0 0 0.68539 1 10701 10701 4.4062 2.6639 1 7820500 + 28284 20101 18906 19276 33301 33301 -0.016062188923797294 KQFDKILEL 9 Unmodified _KQFDKILEL_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5570068359375 3 378.557013 1132.64921 0.14051 5.3191E-05 -0.29978 -0.00011348 -0.15927 -6.0293E-05 378.5568386232738 54.851 0.18124 54.385 54.321 54.502 -0.46664 14 8 2 0 0 0 0.47359 1 29758 29758 8.9762 2.3459 1 2605300 28285 9235 18907 19277 33302 33302 0.0881915819995811 KQFTHSFAPF 10 Unmodified _KQFTHSFAPF_ 0 0 0 REV__ENST00000261813.8_1_5:139624899-139625277:-|nuORF REV__ENST00000261813.8_1_5:139624899-139625277:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8726196289062 3 403.873224 1208.59784 -0.15937 -6.4364E-05 -1.7294 -0.00069845 -1.8888 -0.00076282 403.8727596853336 16.125 0.15876 16.131 16.043 16.202 0.0050564 18 13 2 0 0 0 0.71123 1 8076 8076 0.69767 0.23933 1 293360 + 28286 25006 18908 19278 33303 33303 0.0018883422590079135 KQGFLSKL 8 Unmodified _KQGFLSKL_ 0 0 0 REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3 REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3 MSMS AL20221201_MKP_PDAC_01 4 460.7833251953125 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 104.56 1 98.381 97.881 98.881 -6.1757 0 0 0 0.97444 1 70015 70015 5.2307 0 1 + 28287 21425 18909 19279 33304 33304 0.0861096565678281 KQGYNEVFL 9 Unmodified _KQGYNEVFL_ 0 0 0 REV__ENST00000578106.1_1_17:30321573-30326019:+|nuORF REV__ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2850952148438 2 549.284931 1096.55531 0.50024 0.00027478 -0.0067851 -3.7269E-06 0.49346 0.00027105 549.2850422873792 48.018 0.19687 48.018 47.916 48.112 0 21 9 3 0 0 0 0.024882 1 26308 26308 58.679 3.9053 1 4550600 + 28288 23058 18910 19280 33305 33305 0.010894390976773138 KQGYNEVFL 9 Unmodified _KQGYNEVFL_ 0 0 0 REV__ENST00000578106.1_1_17:30321573-30326019:+|nuORF REV__ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.284931 1096.55531 0.50024 0.00027478 -0.0067851 -3.7269E-06 0.49346 0.00027105 549.2850422873792 48.018 0.19687 48.018 47.916 48.112 0 0 0 NaN 58.679 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4550600 + 28289 23058 18910 19280 0.010894390976773138 KQHVPLVP 8 Unmodified _KQHVPLVP_ 0 0 0 REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF REV__ENST00000588883.5_1_19:44679604-44681824:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2822875976562 2 459.281995 916.549437 1.2088 0.00055518 1.5458 0.00070994 2.7545 0.0012651 459.28235821180385 100.74 0.1366 94.568 94.515 94.651 -6.1757 22 9 3 0 0 0 0.80722 1 67449 67449 2.3027 0 1 87874000 + 28290 22208 18911 19281 33306 33306 0.08782385376650836 KQICDQQDL 9 Unmodified _KQICDQQDL_ 0 0 0 REV__nc|ENSG00000165695|Q96MA6-2|AK8 REV__nc|ENSG00000165695|Q96MA6-2|AK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7650146484375 2 545.763506 1089.51246 NaN NaN NaN NaN NaN NaN NaN 84.838 1 84.338 83.838 84.838 -0.5 0 0 0 0.82739 1 46423 46423 4.3292 0 1 + 28291 22040 18912 19282 33307 33307 -0.028716990220800653 KQIKCKQVVK 10 Unmodified _KQIKCKQVVK_ 0 0 0 REV__ENSG00000197168|ENST00000684899|NEK5 REV__ENSG00000197168|ENST00000684899|NEK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.3749389648438 2 601.376101 1200.73765 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.48 103.98 104.98 -0.048737 0 0 0 1.0024 1 58039 58039 0.40072 0 1 + 28292 23903 18913 19283 33308 33308 0.1453087523875638 KQKFEQLDWEL 11 Unmodified _KQKFEQLDWEL_ 0 0 0 REV__ENSG00000140521|ENST00000268124|POLG REV__ENSG00000140521|ENST00000268124|POLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 732.3798217773438 2 732.380091 1462.74563 0.11644 8.528E-05 -2.0499 -0.0015013 -1.9335 -0.001416 732.3783646412958 59.252 0.23206 59.252 59.123 59.355 0 16 9 2 0 0 0 0.48615 1 33019 33019 17.113 0 1 2699600 + 28293 20480 18914 19284 33309 33309 0.03276680969224799 KQKKSKKKKEK 11 Unmodified _KQKKSKKKKEK_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.4588623046875 2 694.45901 1386.90347 NaN NaN NaN NaN NaN NaN NaN 88.237 1 88.237 87.737 88.737 0 0 0 0 0.9435 1 48844 48844 0 0 1 + 28294 21115 18915 19285 33310 33310 0.225492250191337 KQLAVYEEF 9 Unmodified _KQLAVYEEF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7949829101562 2 563.792589 1125.57063 0.68799 0.00038788 1.7431 0.00098277 2.4311 0.0013707 563.7933808383711 50.949 0.22736 50.949 50.804 51.032 0 42 13 4 0 0 0 0.39143 1 28149 28149 18.146 11.423 1 37601000 28295 3829 18916 19286 33311 33311 0.012863058948596517 KQLAVYEEF 9 Unmodified _KQLAVYEEF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7929077148438 2 563.792589 1125.57063 0.82316 0.00046409 0.33531 0.00018904 1.1585 0.00065314 563.7927503734479 56.914 0.39622 50.938 50.719 51.115 -5.9769 54 23 3 0 0 0 0.076472 2 36477 36329;36477 49.933 31.794 1 70902000 28296 3829 18916 19286 33312;33313 33313 0.012863058948596517 KQLDDLKVEL 10 Unmodified _KQLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8993530273438 3 400.899328 1199.67615 0.36164 0.00014498 0.44435 0.00017814 0.806 0.00032312 400.89944867033 49.833 0.29107 49.833 49.695 49.986 0 44 13 4 0 0 0 0.025206 1 27420 27420 70.929 37.107 1 13026000 28297 4888 18917 19287 33314 33314 0.08430222020501787 KQLDDLKVEL 10 Unmodified _KQLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.8455200195312 2 600.845353 1199.67615 0.29432 0.00017684 0.43632 0.00026216 0.73064 0.000439 600.8454894891153 49.824 0.271 49.824 49.695 49.966 0 30 12 3 0 0 0 0.0016724 1 27424 27424 114.5 56.775 1 7126400 28298 4888 18917 19287 33315 33315 0.08430222020501787 KQLDDLKVEL 10 Unmodified _KQLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8998718261719 3 400.899328 1199.67615 0.86741 0.00034774 0.25622 0.00010272 1.1236 0.00045046 400.89946554173036 50.21 0.2194 49.818 49.692 49.911 -0.3923 24 10 3 0 0 0 0.040614 1 27025 27025 62.869 29.971 1 3025300 28299 4888 18917 19287 33316 33316 0.08430222020501787 KQLDDLKVEL 10 Unmodified _KQLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.84521484375 2 600.845353 1199.67615 0.86204 0.00051795 -0.032408 -1.9472E-05 0.82963 0.00049848 600.8452413130121 50.201 0.1996 49.809 49.672 49.872 -0.3923 13 9 2 0 0 0 0.019181 1 27028 27028 69.338 23.598 1 1743300 28300 4888 18917 19287 33317 33317 0.08430222020501787 KQLDDLKVEL 10 Unmodified _KQLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 600.3318481445312 2 600.845353 1199.67615 0.34355 0.00020642 0.59149 0.00035539 0.93504 0.00056181 600.8460975808047 55.625 0.21566 49.704 49.603 49.819 -5.9211 14 12 2 0 0 0 0.07265 1 35412 35412 67.081 26.842 1 13535000 28301 4888 18917 19287 33318 33318 0.08430222020501787 KQLDIELKV 9 Unmodified _KQLDIELKV_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3309936523438 2 543.331882 1084.64921 0.62186 0.00033788 -0.17907 -9.7295E-05 0.44279 0.00024058 543.331572940471 49.637 0.22438 49.637 49.51 49.735 0 19 9 3 0 0 0 0.29507 1 27352 27352 17.443 3.0373 1 2597400 28302 895 18918 19288 33319 33319 0.11027158199954101 KQLDIELKV 9 Unmodified _KQLDIELKV_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.2177429199219 3 362.557013 1084.64921 0.48817 0.00017699 0.51842 0.00018796 1.0066 0.00036495 362.55706243698285 49.618 0.22438 49.618 49.51 49.735 0 15 9 2 0 0 0 0.068642 1 27360 27360 37.075 13.285 1 2849200 28303 895 18918 19288 33320 33320 0.11027158199954101 KQLDIELKV 9 Unmodified _KQLDIELKV_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.331882 1084.64921 0.60312 0.0003277 -0.058072 -3.1552E-05 0.54505 0.00029614 543.3316070736657 49.941 0.15949 49.549 49.49 49.65 -0.3923 -0.044057 5.62E-05 NaN 17.443 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1405000 28304 895 18918 19288 0.11027158199954101 KQLDIELKV 9 Unmodified _KQLDIELKV_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 362.557013 1084.64921 0.79913 0.00028973 -0.82645 -0.00029963 -0.027319 -9.9046E-06 362.5563701476949 49.969 0.13934 49.577 49.51 49.65 -0.3923 -0.02034 -0.0012835 NaN 37.075 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1292800 28305 895 18918 19288 0.11027158199954101 KQLFLEGSL 9 Unmodified _KQLFLEGSL_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B;nc|ENSG00000151240|Q9Y2E4-2|DIP2C;ENSG00000151240|ENST00000280886|DIP2C ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7977294921875 2 517.797675 1033.5808 0.08641 4.4743E-05 1.0425 0.00053981 1.1289 0.00058456 517.7985346376443 66.428 0.38599 65.945 65.744 66.13 -0.48323 46 19 3 0 0 0 0.55144 1 36371 36371 4.3292 0 1 7941100 28306 927;6100 18919 19289 33321 33321 0.06534913620112093 KQLHWEIFRRD 11 Unmodified _KQLHWEIFRRD_ 0 0 0 REV__ENST00000492143.5_1_7:148514900-148516105:-|nuORF REV__ENST00000492143.5_1_7:148514900-148516105:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.7100219726562 4 382.709934 1526.81063 0.18797 7.1939E-05 -0.070265 -2.6891E-05 0.11771 4.5048E-05 382.96085990015666 27.876 0.14503 27.906 27.84 27.985 0.029564 9 5 2 0 0 0 0.74429 1 14532 14532 0.094841 0 1 1584700 + 28307 27898 18920 19290 33322 33322 0.06829720285713847 KQLIMCCK 8 Unmodified _KQLIMCCK_ 0 0 0 ENST00000264669.9_1_5:7859291-7859336:-|nuORF ENST00000264669.9_1_5:7859291-7859336:-|nuORF ENST00000264669.9_1_5:7859291-7859336:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2534484863281 2 483.750301 965.48605 0.27823 0.00013459 1.6024 0.00077515 1.8806 0.00090975 483.75093959683403 91.827 0.18799 91.827 91.73 91.918 0 19 16 2 0 0 0 8.7369 1 50756 50756 0.69038 0.69038 1 173720 28308 11319 18921 19291 33323 33323 0.0019261728124320143 KQLKKIHK 8 Unmodified _KQLKKIHK_ 0 0 0 REV__ENSG00000225830|ENST00000355832|ERCC6 REV__ENSG00000225830|ENST00000355832|ERCC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7876892089844 2 511.845294 1021.67603 0.76241 0.00039024 0.27343 0.00013995 1.0358 0.00053019 511.8454102868628 47.929 0.22393 47.89 47.722 47.946 -0.038647 17 10 2 0 0 0 8.7369 1 25856 25856 2.5775 0.51773 1 1493000 + 28309 24388 18922 19292 33324 33324 0.16606311601788093 KQLMEQNAP 9 Unmodified _KQLMEQNAP_ 0 0 0 REV__ENSG00000185100|ENST00000330877|ADSS1 REV__ENSG00000185100|ENST00000330877|ADSS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2936401367188 2 529.768591 1057.52263 -0.042847 -2.2699E-05 0.52484 0.00027804 0.48199 0.00025534 529.7688843491283 22.41 0.28654 22.41 22.283 22.57 0 33 13 3 0 0 0 0.21367 1 11468 11468 4.756 0.81161 1 1927600 + 28310 23471 18923 19293 33325 33325 -0.0038309129683966603 KQLPTEPGSL 10 Unmodified _KQLPTEPGSL_ 0 0 0 REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2974853515625 2 535.298039 1068.58152 0.61615 0.00032983 0.17097 9.1521E-05 0.78713 0.00042135 535.2977202367208 49.808 0.23171 49.808 49.735 49.966 0 17 10 2 0 0 0 0.095098 1 27461 27461 47.749 7.799 1 2489000 + 28311 25559 18924 19294 33326 33326 0.04997708269161194 KQLPTEPGSL 10 Unmodified _KQLPTEPGSL_ 0 0 0 REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF REV__ENST00000326448.11_1_3:160117054-160117270:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.298039 1068.58152 0.61615 0.00032983 0.17097 9.1521E-05 0.78713 0.00042135 535.2977202367208 49.808 0.23171 49.808 49.735 49.966 0 0 0 NaN 47.749 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2489000 + 28312 25559 18924 19294 0.04997708269161194 KQPANRSSRL 10 Unmodified _KQPANRSSRL_ 0 0 0 REV__ENST00000395240.7_1_16:30077118-30077160:+|nuORF REV__ENST00000395240.7_1_16:30077118-30077160:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.2215576171875 3 386.223028 1155.64725 NaN NaN NaN NaN NaN NaN NaN 27.002 1 23.966 23.466 24.466 -3.0365 0 0 0 0.78298 1 14931 14931 7.9454 0 1 + 28313 26469 18925 19295 33327 33327 0.07565542234715394 KQPCLHGA 8 Unmodified _KQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2200317382812 2 427.22108 852.427607 NaN NaN NaN NaN NaN NaN NaN 16.903 1 16.903 16.403 17.403 0 0 0 0 0.97444 1 8286 8286 2.5775 0 1 + 28314 26552 18926 19296 33328 33328 -0.0045097997737002515 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7904052734375 2 601.790047 1201.56554 -0.076786 -4.6209E-05 1.03 0.00061986 0.95325 0.00057365 601.7903857074724 63.825 0.6424 63.825 63.612 64.255 0 73 26 4 0 0 0 0.024882 2 35562 35562;35666 58.679 34.005 1 9759600 28315 1694 18927 19297 33329;33330 33329 -0.02717997967761221 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.79052734375 2 601.790047 1201.56554 0.67511 0.00040628 0.77428 0.00046595 1.4494 0.00087223 601.7902954492978 64.347 0.57613 63.862 63.654 64.23 -0.48512 62 26 4 0 0 0 0.032796 2 35139 35037;35139 53.833 21.527 1 11129000 28316 1694 18927 19297 33331;33332 33332 -0.02717997967761221 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7903442382812 2 601.790047 1201.56554 0.26419 0.00015899 0.41775 0.0002514 0.68194 0.00041038 601.7902161343648 69.225 0.62463 63.049 62.802 63.427 -6.1757 59 34 2 0 0 0 0.009483 2 45236 45109;45236 81.89 33.544 1 54375000 28317 1694 18927 19297 33333;33334 33334 -0.02717997967761221 KQPEDYFYL 9 Unmodified _KQPEDYFYL_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 601.790047 1201.56554 0.83894 0.00050486 -0.059636 -3.5888E-05 0.7793 0.00046898 601.7903392943747 63.889 0.23442 63.879 63.762 63.996 -0.010532 0.02366 -0.001013 NaN 58.679 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1329200 28318 1694 18927 19297 -0.02717997967761221 KQPEEYHYL 9 Unmodified _KQPEEYHYL_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.8648681640625 3 402.864506 1205.57169 -0.76602 -0.0003086 0.031244 1.2587E-05 -0.73478 -0.00029602 402.8644742092567 30.126 0.24899 30.126 29.994 30.243 0 29 11 3 0 0 0 0.091924 1 15611 15611 34.932 26.187 1 9815200 28319 945 18928 19298 33335 33335 -0.022874797362419486 KQPEEYHYL 9 Unmodified _KQPEEYHYL_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.7933349609375 2 603.793121 1205.57169 -0.89264 -0.00053897 0.47137 0.00028461 -0.42127 -0.00025436 603.7935678942952 30.109 0.18639 30.109 30.015 30.201 0 19 8 3 0 0 0 0.044296 1 15627 15627 52.268 16.141 1 4100800 28320 945 18928 19298 33336 33336 -0.022874797362419486 KQPEEYHYL 9 Unmodified _KQPEEYHYL_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MSMS AL20221201_MKP_PDAC_01 4 603.7952880859375 2 603.793121 1205.57169 NaN NaN NaN NaN NaN NaN NaN 33.087 1 29.231 28.731 29.731 -3.8562 0 0 0 0.13831 1 18944 18944 34.102 21.862 1 28321 945 18928 19298 33337 33337 -0.022874797362419486 KQQGLYFPL 9 Unmodified _KQQGLYFPL_ 0 0 0 ENST00000376765.6_1_6:30035405-30036127:+|nuORF;ENST00000376769.6_1_6:30035187-30036127:+|nuORF ENST00000376765.6_1_6:30035405-30036127:+|nuORF ENST00000376765.6_1_6:30035405-30036127:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3065795898438 2 547.305667 1092.59678 0.33881 0.00018543 0.77198 0.00042251 1.1108 0.00060794 547.3061541433136 68.425 0.41821 67.944 67.804 68.223 -0.48071 33 18 3 0 0 0 0.49272 1 37485 37485 7.9102 0.62092 1 3297700 28322 12509 18929 19299 33338 33338 0.05418619857005069 KQQHKQYSM 9 Unmodified _KQQHKQYSM_ 0 0 0 REV__nc|ENSG00000285946|P0DV60|LCE7A REV__nc|ENSG00000285946|P0DV60|LCE7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2845458984375 2 589.292765 1176.57098 0.94785 0.00055856 -2.8953 -0.0017062 -1.9475 -0.0011476 589.2909285859132 88.778 1.4282 82.602 82.06 83.488 -6.1757 249 79 5 0 0 0 0.10734 3 59020 58773;58896;59020 32.305 13.833 1 586300000 + 28323 30018 18930 19300 33339;33340;33341 33341 -0.010245976569422055 KQQKLWHLF 9 Unmodified _KQQKLWHLF_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.9045715332031 3 409.904747 1226.69241 0.39865 0.00016341 0.22514 9.2285E-05 0.62378 0.00025569 409.9047684430364 49.388 0.32162 49.344 49.175 49.497 -0.04369 44 15 4 0 0 0 0.023164 1 26640 26640 53.833 34.471 1 11570000 28324 9091 18931 19301 33342 33342 0.08813392767888217 KQQKLWHLF 9 Unmodified _KQQKLWHLF_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.9059448242188 3 409.904747 1226.69241 0.28269 0.00011588 0.6927 0.00028394 0.97539 0.00039982 409.9049677199142 93.092 0.2074 86.916 86.806 87.014 -6.1757 34 13 4 0 0 0 0.0086629 1 61562 61562 99.799 36.571 1 67032000 28325 9091 18931 19301 33343 33343 0.08813392767888217 KQQKLWHLF 9 Unmodified _KQQKLWHLF_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.3536987304688 2 614.353483 1226.69241 0.044047 2.706E-05 -0.092535 -5.6849E-05 -0.048488 -2.9789E-05 614.3536602539951 93.111 0.15804 86.935 86.823 86.981 -6.1757 10 9 2 0 0 0 0.0083938 1 61610 61610 108 60.248 1 16621000 28326 9091 18931 19301 33344 33344 0.08813392767888217 KQQMKLLYSEM 11 Unmodified _KQQMKLLYSEM_ 0 0 0 REV__ENSG00000170160|ENST00000399273|CCDC144A REV__ENSG00000170160|ENST00000399273|CCDC144A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1398.7119140625 1 1398.71197 1397.70469 0.65047 0.00090982 0.038454 5.3786E-05 0.68892 0.00096361 1398.7119056448469 40.882 0.21958 40.881 40.81 41.03 -0.0017929 15 10 2 0 0 0 0.74203 1 21813 21813 0.30703 0 1 3076300 + 28327 22450 18932 19302 33345 33345 0.02174880333791407 KQQREEELREI 11 Unmodified _KQQREEELREI_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-3|LRSAM1;ENST00000483302.5_1_9:130248105-130265175:+|nuORF nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MSMS AL20221201_MKP_PDAC_01 4 486.5945739746094 3 486.595078 1456.76341 NaN NaN NaN NaN NaN NaN NaN 98.897 1 92.721 92.221 93.221 -6.1757 0 0 0 0.93694 1 65702 65702 4.7159 0.30977 1 28328 5924 18933 19303 33346 33346 0.05329396224078664 KQQRKEWLY 9 Unmodified _KQQRKEWLY_ 0 0 0 RPL35|p.R112W|1|0.16|ENSG00000136942|chr9:124857956-124857956|G/A|missense_variant RPL35|p.R112W|1|0.16|ENSG00000136942|chr9:124857956-124857956|G/A|missense_variant RPL35|p.R112W|1|0.16|ENSG00000136942|chr9:124857956-124857956|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.9015502929688 3 426.903295 1277.68806 -0.29541 -0.00012611 -1.99 -0.00084953 -2.2854 -0.00097564 426.9021516739875 22.806 0.26792 22.806 22.653 22.921 0 21 14 2 0 0 0 0.59218 1 11567 11567 0.96228 0.33545 1 1837300 28329 30152 18934 19304 33347 33347 0.06031883554328488 KQQVYFFLF 9 Unmodified _KQQVYFFLF_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.3306274414062 2 610.329142 1218.64373 2.1936 0.0013388 0.14331 8.7467E-05 2.3369 0.0014263 610.329640588768 94.58 0.20339 94.595 94.492 94.695 0.014244 12 7 2 0 0 0 0.41742 1 52578 52578 11.64 0 1 1077400 28330 3063 18935 19305 33348 33348 0.04315479408137435 KQREEEEYE 9 Unmodified _KQREEEEYE_ 0 0 0 REV__ENST00000519230.1_1_5:157413535-157414072:-|nuORF REV__ENST00000519230.1_1_5:157413535-157414072:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8545532226562 3 413.854447 1238.54151 NaN NaN NaN NaN NaN NaN NaN 37.679 1 37.696 37.196 38.196 0.01704 0 0 0 0.84564 1 20014 20014 1.0715 0.10919 1 + 28331 28257 18936 19306 33349 33349 -0.06821883192105815 KQRFKKRK 8 Unmodified _KQRFKKRK_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8662719726562 2 559.867092 1117.71963 -0.22271 -0.00012469 -1.6646 -0.00093197 -1.8873 -0.0010567 559.8663710575365 102.92 0.30409 102.87 102.72 103.03 -0.047928 17 11 2 0 0 0 0.80992 1 57169 57169 0.69038 0 1 1125200 + 28332 20002 18937 19307 33350 33350 0.16547921098936058 KQRFKKRK 8 Unmodified _KQRFKKRK_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.867092 1117.71963 0.51619 0.000289 0.34519 0.00019326 0.86138 0.00048226 559.8671346646577 102.89 0.12837 102.79 102.73 102.85 -0.10458 -0.042246 0.0019419 NaN 0.69038 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 117530 + 28333 20002 18937 19307 0.16547921098936058 KQRFKKRK 8 Unmodified _KQRFKKRK_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.867092 1117.71963 -0.22271 -0.00012469 -1.6646 -0.00093197 -1.8873 -0.0010567 559.8663710575365 102.92 0.30409 102.87 102.72 103.03 -0.047928 0.042246 -0.0003086 NaN 0.69038 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1125200 + 28334 20002 18937 19307 0.16547921098936058 KQRKELYSLAE 11 Unmodified _KQRKELYSLAE_ 0 0 0 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 REV__nc|ENSG00000120697|Q9Y673-2|ALG5 MSMS AL20221201_MKP_PDAC_01 4 455.589111328125 3 455.589265 1363.74596 NaN NaN NaN NaN NaN NaN NaN 75.399 1 69.223 68.723 69.723 -6.1757 0 0 0 0.9385 1 49307 49307 3.5927 0 1 + 28335 19255 18938 19308 33351 33351 0.07864100689107545 KQRMYFFGL 9 Unmodified _KQRMYFFGL_ 0 0 0 REV__MLT1J_dup6381|chr7:2904977-2905418:-|1.4760424602591382|0.2844899709651972|2.38|179.0|6|1|sense REV__MLT1J_dup6381|chr7:2904977-2905418:-|1.4760424602591382|0.2844899709651972|2.38|179.0|6|1|sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.8772277832031 3 397.211071 1188.61138 0.31212 0.00012398 0.5708 0.00022673 0.88293 0.00035071 397.2113604157325 2.6054 0.073268 0.1234 0.10793 0.1812 -2.482 36 28 2 0 0 0 0.21798 1 1346 1346 1.1933 0.41681 1 1230300 + 28336 29468 18939 19309 33352 33352 0.024623687334951683 KQRQELAH 8 Unmodified _KQRQELAH_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MSMS AL20221201_MKP_PDAC_01 4 505.2814025878906 2 505.280515 1008.54648 NaN NaN NaN NaN NaN NaN NaN 21.298 1 18.563 18.063 19.063 -2.7348 0 0 0 0.92452 1 11393 11393 15.847 2.3393 1 28337 9754 18940 19310 33353 33353 0.04254510251848842 KQSYLYRL 8 Unmodified _KQSYLYRL_ 0 0 0 REV__ENSG00000184743|ENST00000398868|ATL3 REV__ENSG00000184743|ENST00000398868|ATL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5370178222656 3 357.537953 1069.59203 0.16405 5.8654E-05 -0.13204 -4.7209E-05 0.032009 1.1445E-05 357.53809321702306 40.978 0.40485 40.976 40.731 41.136 -0.0017929 40 19 3 0 0 0 0.80232 1 21858 21858 3.5965 0 1 5797900 + 28338 23441 18941 19311 33354 33354 0.06001735714221468 KQSYLYRL 8 Unmodified _KQSYLYRL_ 0 0 0 REV__ENSG00000184743|ENST00000398868|ATL3 REV__ENSG00000184743|ENST00000398868|ATL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 357.537953 1069.59203 -0.51486 -0.00018408 1.7149 0.00061313 1.2 0.00042905 357.538403033413 41.273 0.10814 41.273 41.196 41.304 0 0.14863 0.0011064 NaN 3.5965 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1407200 + 28339 23441 18941 19311 0.06001735714221468 KQTDLEITV 9 Unmodified _KQTDLEITV_ 0 0 0 ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7903442382812 2 523.790047 1045.56554 0.69287 0.00036292 0.57197 0.00029959 1.2648 0.00066251 523.7899759480795 46.631 0.34994 46.631 46.412 46.762 0 36 15 3 0 0 0 0.0094097 1 25501 25501 82.529 17.294 1 4699200 28340 6398 18942 19312 33355 33355 0.04458002032220065 KQTELFAHF 9 Unmodified _KQTELFAHF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.79638671875 2 560.792924 1119.57129 0.83679 0.00046927 -1.384 -0.00077616 -0.54725 -0.00030689 560.7930049570479 47.453 0.22255 47.101 46.98 47.203 -0.3526 24 10 3 0 0 0 0.0081887 1 25411 25411 103.75 69.646 1 9773200 28341 6242 18943 19313 33356 33356 0.01629145334572968 KQTELFAHF 9 Unmodified _KQTELFAHF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1974182128906 3 374.197708 1119.57129 0.64436 0.00024112 -0.21452 -8.0274E-05 0.42984 0.00016084 374.19735278320474 47.458 0.24337 47.106 46.959 47.203 -0.3526 23 11 3 0 0 0 0.091924 1 25424 25424 34.932 22.691 1 5306300 28342 6242 18943 19313 33357 33357 0.01629145334572968 KQTELFAHF 9 Unmodified _KQTELFAHF_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MSMS AL20221201_MKP_PDAC_01 4 560.7941284179688 2 560.792924 1119.57129 NaN NaN NaN NaN NaN NaN NaN 51.482 1 45.833 45.333 46.333 -5.649 0 0 0 0.017109 1 32399 32399 122.18 82.23 1 28343 6242 18943 19313 33358 33358 0.01629145334572968 KQTFSKELDRI 11 Unmodified _KQTFSKELDRI_ 0 0 0 REV__ENSG00000115652|ENST00000283148|UXS1 REV__ENSG00000115652|ENST00000283148|UXS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.9241333007812 3 455.589265 1363.74596 1.2004 0.00054689 -0.069022 -3.1446E-05 1.1314 0.00051544 455.5891762613422 55.499 0.46938 49.578 49.35 49.819 -5.9211 72 28 3 0 0 0 0.60536 2 35239 35239;35376 11.065 2.621 1 67241000 + 28344 19001 18944 19314 33359;33360 33359 0.07864100689084808 KQTFSKELDRI 11 Unmodified _KQTFSKELDRI_ 0 0 0 REV__ENSG00000115652|ENST00000283148|UXS1 REV__ENSG00000115652|ENST00000283148|UXS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 455.9241333007812 3 455.589265 1363.74596 1.2004 0.00054689 -0.069022 -3.1446E-05 1.1314 0.00051544 455.5891762613422 55.499 0.46938 49.578 49.35 49.819 -5.9211 72 28 3 0 0 0 0.29136 1 35239 35239 11.065 4.4418 1 67241000 + 28345 19001 18944 19314 33361 33361 0.07864100689084808 KQTGPVIIETW 11 Unmodified _KQTGPVIIETW_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MSMS AL20221201_MKP_PDAC_01 4 636.3544921875 2 636.353345 1270.69214 NaN NaN NaN NaN NaN NaN NaN 25.695 1 22.744 22.244 23.244 -2.9511 0 0 0 0.90364 1 14085 14085 7.1017 1.3699 1 28346 8125 18945 19315 33362 33362 0.06761928257378713 KQTLLTNAF 9 Unmodified _KQTLLTNAF_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.289794921875 2 518.295299 1034.57605 -0.16566 -8.5858E-05 -0.74755 -0.00038745 -0.91321 -0.00047331 518.2943760201941 32.236 0.36993 32.107 31.961 32.33 -0.12915 29 14 3 0 0 0 0.32871 1 16852 16852 15.847 1.9411 1 6420000 28347 9258 18946 19316 33363 33363 0.06014029477319127 KQTQWKIK 8 Unmodified _KQTQWKIK_ 0 0 0 REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF REV__ENST00000524191.5_1_8:74621343-74650536:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8818969726562 3 353.881831 1058.62366 0.53418 0.00018904 1.2385 0.00043829 1.7727 0.00062732 353.8824492124478 25.685 0.57734 22.734 22.303 22.88 -2.9511 47 32 2 0 0 0 0.59615 1 14003 14003 26.268 2.4784 1 8934100 + 28348 28327 18947 19317 33364 33364 0.09669728468156791 KQVEEIFNL 9 Unmodified _KQVEEIFNL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.30615234375 2 560.305864 1118.59717 0.35959 0.00020148 2.4671 0.0013823 2.8267 0.0015838 560.3060491371441 63.006 0.3477 63.006 62.823 63.17 0 45 14 4 0 0 0 0.10134 1 35102 35102 41.956 12.874 1 2513000 28349 10851 18948 19318 33365 33365 0.04261994786179457 KQVEEIFNL 9 Unmodified _KQVEEIFNL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.307373046875 2 560.305864 1118.59717 0.50476 0.00028282 -0.14137 -7.9212E-05 0.36339 0.00020361 560.306567274894 63.329 0.35021 62.843 62.665 63.016 -0.48617 46 15 4 0 0 0 0.060956 1 34517 34517 53.833 17.706 1 3502700 28350 10851 18948 19318 33366 33366 0.04261994786179457 KQVEESHKQ 9 Unmodified _KQVEESHKQ_ 0 0 0 nc|ENSG00000130558|Q99784-4|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1;nc|ENSG00000130558|Q99784-2|OLFM1;nc|ENSG00000130558|Q99784-5|OLFM1;ENSG00000130558|ENST00000371793|OLFM1 nc|ENSG00000130558|Q99784-4|OLFM1 nc|ENSG00000130558|Q99784-4|OLFM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.788818359375 2 556.78837 1111.56219 -0.25193 -0.00014027 -0.48345 -0.00026918 -0.73539 -0.00040945 556.7880012363844 34.432 0.25074 34.432 34.289 34.54 0 37 12 4 0 0 0 0.32871 1 18116 18116 15.847 0.5987 1 65164000 28351 16187 18949 19319 33367 33367 0.010867519782550517 KQVSDLISV 9 Unmodified _KQVSDLISV_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7877502441406 2 494.787307 987.560061 -0.13589 -6.7237E-05 -0.39018 -0.00019306 -0.52607 -0.0002603 494.78712724256064 48.905 0.21526 48.905 48.808 49.023 0 16 10 2 0 0 0 0.08691 1 26878 26878 36.127 5.4905 1 3268500 28352 2594 18950 19320 33368 33368 0.06578323240432837 KQVSDLISV 9 Unmodified _KQVSDLISV_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.787307 987.560061 0.61302 0.00030332 -0.012195 -6.0341E-06 0.60083 0.00029728 494.78720541522404 49.16 0.20607 48.789 48.654 48.86 -0.37172 -0.058065 0.00022856 NaN 36.127 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1610100 28353 2594 18950 19320 0.06578323240432837 KQVSSGHWDL 10 Unmodified _KQVSSGHWDL_ 0 0 0 REV__ENST00000300006.8_2_16:15681261-15681480:+|nuORF REV__ENST00000300006.8_2_16:15681261-15681480:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1960144042969 3 386.196367 1155.56727 -0.50692 -0.00019577 0.13748 5.3093E-05 -0.36944 -0.00014268 386.19629571183367 19.259 0.15651 19.282 19.184 19.341 0.023106 21 9 3 0 0 0 0.67755 1 9694 9694 5.4027 5.4027 1 1364400 + 28354 25300 18951 19321 33369 33369 -0.004289441591254217 KQVSSGHWDL 10 Unmodified _KQVSSGHWDL_ 0 0 0 REV__ENST00000300006.8_2_16:15681261-15681480:+|nuORF REV__ENST00000300006.8_2_16:15681261-15681480:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 386.196367 1155.56727 -0.50692 -0.00019577 0.13748 5.3093E-05 -0.36944 -0.00014268 386.19629571183367 19.259 0.15651 19.282 19.184 19.341 0.023106 0 0 NaN 5.4027 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1364400 + 28355 25300 18951 19321 -0.004289441591254217 KQYYPKIALK 10 Unmodified _KQYYPKIALK_ 0 0 0 REV__ENSG00000126461|ENST00000360565|SCAF1 REV__ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.9206848144531 3 417.920174 1250.73869 0.54263 0.00022678 1.2858 0.00053736 1.8284 0.00076414 417.9207189682167 40.388 0.56263 40.091 39.882 40.445 -0.29716 48 26 2 0 0 0 0.71042 1 21472 21472 1.7423 0.52744 1 1645300 + 28356 19547 18952 19322 33370 33370 0.12335412879292562 KRADAGFVY 9 Unmodified _KRADAGFVY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7719116210938 2 513.771991 1025.52943 -0.32153 -0.00016519 0.081057 4.1645E-05 -0.24047 -0.00012355 513.7716323297263 29.672 0.12511 29.672 29.597 29.722 0 11 6 2 0 0 0 0.43515 1 15399 15399 10.8 0.72558 1 1063000 28357 5814 18953 19323 33371 33371 0.017685896460534423 KRADAGFVY 9 Unmodified _KRADAGFVY_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7726440429688 2 513.771991 1025.52943 0.91221 0.00046867 -0.45815 -0.00023538 0.45406 0.00023328 513.771875849457 32.414 0.30569 28.558 28.447 28.753 -3.8562 26 16 2 0 0 0 0.07087 1 18473 18473 39.95 3.8227 1 8022200 28358 5814 18953 19323 33372 33372 0.017685896460534423 KRAFVRIL 8 Unmodified _KRAFVRIL_ 0 0 0 ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B ENSG00000170214|ENST00000306675|ADRA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3338623046875 2 501.832186 1001.64982 1.6675 0.00083678 -1.1486 -0.00057639 0.51888 0.00026039 501.8314787227817 104.88 0.094582 98.705 98.654 98.749 -6.1757 11 7 2 0 0 0 0.80676 1 70201 70201 2.5775 1.7838 1 5407800 28359 7959 18954 19324 33373 33373 0.14906042430311572 KRAKDRRHEEY 11 Unmodified _KRAKDRRHEEY_ 0 0 0 REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 744.3949584960938 2 744.39493 1486.77531 NaN NaN NaN NaN NaN NaN NaN 85.206 1 85.206 84.706 85.706 0 0 0 0 0.9435 1 47225 47225 0 0 1 + 28360 22355 18955 19325 33374 33374 0.0513905775794683 KRARRRTST 9 Unmodified _KRARRRTST_ 0 0 0 ENST00000380445.7_1_20:2842723-2843279:+|nuORF ENST00000380445.7_1_20:2842723-2843279:+|nuORF ENST00000380445.7_1_20:2842723-2843279:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8988037109375 3 377.898767 1130.67447 -0.15159 -5.7285E-05 0.074708 2.8232E-05 -0.076881 -2.9053E-05 377.89859179404453 32.402 0.33266 32.431 32.258 32.591 0.029743 34 13 3 0 0 0 0.61381 1 17085 17085 0.23584 0 1 4696800 28361 12597 18956 19326 33375 33375 0.1143607056574183 KRATRQLL 8 Unmodified _KRATRQLL_ 0 0 0 ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000465323.1_1_11:3143079-3150378:-|nuORF;ENST00000477622.1_1_11:3143079-3147843:-|nuORF ENST00000534491.5_1_11:3114755-3187956:-|nuORF ENST00000534491.5_1_11:3114755-3187956:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3153686523438 2 493.3169 984.619247 1.5774 0.00077815 1.4916 0.00073582 3.069 0.001514 493.3173251532418 104.87 0.17558 98.69 98.573 98.749 -6.1757 33 17 3 0 0 0 0.80722 1 70174 70174 2.3027 0.24298 1 34592000 28362 528 18957 19327 33376 33376 0.12632264045259944 KRAVSTPR 8 Unmodified _KRAVSTPR_ 0 0 0 ENST00000327441.11_1_14:37667237-37696939:+|nuORF;ENST00000556615.5_2_14:37667237-37716319:+|nuORF;ENST00000554930.5_1_14:37667225-37854725:+|nuORF ENST00000327441.11_1_14:37667237-37696939:+|nuORF ENST00000327441.11_1_14:37667237-37696939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7809753417969 2 457.780151 913.545748 0.61036 0.00027941 0.81537 0.00037326 1.4257 0.00065267 457.78050985587873 78.545 0.72674 78.598 78.327 79.054 0.052452 37 29 2 0 0 0 0.80763 1 43398 43398 2.0598 0 1 1561100 28363 11826 18958 19328 33377 33377 0.08551715602811782 KRCCAGGG 8 Unmodified _KRCCAGGG_ 0 0 0 ENST00000406452.7_1_8:87520911-87521004:-|nuORF ENST00000406452.7_1_8:87520911-87521004:-|nuORF ENST00000406452.7_1_8:87520911-87521004:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.17041015625 2 376.170533 750.326513 0.26654 0.00010027 -0.36317 -0.00013661 -0.096621 -3.6346E-05 376.170451216878 46.666 0.38296 46.666 46.436 46.819 0 46 17 3 0 0 0 0.80975 1 25542 25542 0.79363 0.19213 1 7917700 28364 12929 18959 19329 33378 33378 -0.05863754951712963 KRCGGGGG 8 Unmodified _KRCGGGGG_ 0 0 0 REV__ENST00000356136.7_2_11:75526337-75562971:+|nuORF REV__ENST00000356136.7_2_11:75526337-75562971:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3285522460938 1 691.330418 690.323142 -0.017319 -1.1973E-05 -0.29715 -0.00020543 -0.31447 -0.0002174 691.3299353463141 86.008 0.47409 86.008 85.768 86.242 0 38 22 2 0 0 0 0.80975 1 47738 47738 0.79363 0.79363 1 1014500 + 28365 25821 18960 19330 33379 33379 -0.034406817340709495 KRDKGNQLYT 10 Unmodified _KRDKGNQLYT_ 0 0 0 REV__ENSG00000162747|ENST00000650385|FCGR3B REV__ENSG00000162747|ENST00000650385|FCGR3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5771179199219 3 408.222805 1221.64658 -0.28965 -0.00011824 -2.5744 -0.0010509 -2.8641 -0.0011692 408.2211686293057 37.733 0.1662 37.75 37.673 37.839 0.01704 10 7 2 0 0 0 0.23999 1 20011 20011 1.4551 0.49284 1 977090 + 28366 21686 18961 19331 33380 33380 0.04462702795012774 KREGQKTNSP 10 Unmodified _KREGQKTNSP_ 0 0 0 REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A REV__nc|ENSG00000137177|Q9H1H9-3|KIF13A MSMS AL20221201_MKP_PDAC_01 4 572.8076782226562 2 572.807094 1143.59963 NaN NaN NaN NaN NaN NaN NaN 39.599 1 35.148 34.648 35.648 -4.4509 0 0 0 0.68184 1 23524 23524 17.443 0.87677 1 + 28367 20219 18962 19332 33381 33381 0.03357843243838943 KREVELFVL 9 Unmodified _KREVELFVL_ 0 0 0 ENSG00000183773|ENST00000440238|AIFM3 ENSG00000183773|ENST00000440238|AIFM3 ENSG00000183773|ENST00000440238|AIFM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2284240722656 3 378.229008 1131.66519 -0.55059 -0.00020825 0.16804 6.3556E-05 -0.38256 -0.00014469 378.2289585754958 26.466 0.33495 26.466 26.323 26.658 0 37 15 3 0 0 0 0.58145 1 13676 13676 2.4985 0.41248 1 7189700 28368 9193 18963 19333 33382 33382 0.10462864436863129 KREVYVEIL 9 Unmodified _KREVYVEIL_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8375244140625 2 574.837331 1147.66011 0.29233 0.00016804 0.6229 0.00035807 0.91523 0.00052611 574.8377289691891 73.23 0.28246 73.272 73.166 73.448 0.041725 22 12 2 0 0 0 0.14594 1 40373 40373 24.021 0 1 2742600 + 28369 17225 18964 19334 33383 33383 0.0921856057423156 KRFFRFFKFTW 11 Unmodified _KRFFRFFKFTW_ 0 0 0 REV__ENST00000358011.8_2_1:38155551-38156178:-|nuORF REV__ENST00000358011.8_2_1:38155551-38156178:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.4404907226562 2 805.443163 1608.87177 NaN NaN NaN NaN NaN NaN NaN 46.019 1 46.019 45.519 46.519 0 0 0 0 0.94337 1 25129 25129 0 0 1 + 28370 25862 18965 19335 33384 33384 0.09169277055821112 KRFGKAYNL 9 Unmodified _KRFGKAYNL_ 0 0 0 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2140197753906 3 366.213581 1095.61891 1.0208 0.00037383 -0.87206 -0.00031936 0.14873 5.4466E-05 366.2135492147881 22.662 0.20063 19.884 19.792 19.993 -2.7784 19 15 2 0 0 0 0.21643 1 12184 12184 21.537 1.0834 1 3907300 28371 10066 18966 19336 33385 33385 0.07492844325406622 KRFGKAYNL 9 Unmodified _KRFGKAYNL_ 0 0 0 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 366.213581 1095.61891 0.049486 1.8123E-05 -2.0763 -0.00076037 -2.0268 -0.00074224 366.21217794617525 19.988 0.07551 19.996 19.946 20.022 0.0078487 0.056255 -0.0012494 NaN 21.537 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 473700 28372 10066 18966 19336 0.07492844325406622 KRFGWMEQQHR 11 Unmodified _KRFGWMEQQHR_ 0 0 0 REV__nc|ENSG00000175701|Q8NCU8-1|MTLN REV__nc|ENSG00000175701|Q8NCU8-1|MTLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.5855102539062 3 501.585971 1501.73608 -0.62962 -0.00031581 -0.074121 -3.7178E-05 -0.70375 -0.00035299 501.920207720983 20.863 0.24517 20.892 20.711 20.956 0.028355 21 10 3 0 0 0 0.7326 1 10540 10540 0.40827 0 1 1570400 + 28373 29797 18967 19337 33386 33386 0.005286342027147839 KRFGWMEQQHR 11 Unmodified _KRFGWMEQQHR_ 0 0 0 REV__nc|ENSG00000175701|Q8NCU8-1|MTLN REV__nc|ENSG00000175701|Q8NCU8-1|MTLN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 501.585971 1501.73608 -0.076119 -3.818E-05 -1.0683 -0.00053584 -1.1444 -0.00057402 501.5852889430834 20.907 0.070299 20.907 20.868 20.938 0 0.0076826 -0.0005647 NaN 0.40827 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 3095100 + 28374 29797 18967 19337 0.005286342027147839 KRFGWMEQQHR 11 Unmodified _KRFGWMEQQHR_ 0 0 0 REV__nc|ENSG00000175701|Q8NCU8-1|MTLN REV__nc|ENSG00000175701|Q8NCU8-1|MTLN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 501.585971 1501.73608 -0.62962 -0.00031581 -0.074121 -3.7178E-05 -0.70375 -0.00035299 501.920207720983 20.863 0.24517 20.892 20.711 20.956 0.028355 -0.0076826 0.0009313 NaN 0.40827 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1570400 + 28375 29797 18967 19337 0.005286342027147839 KRFKKQTKKRK 11 Unmodified _KRFKKQTKKRK_ 0 0 0 REV__ENSG00000148296|ENST00000372022|SURF6 REV__ENSG00000148296|ENST00000372022|SURF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 738.48388671875 2 738.485894 1474.95723 NaN NaN NaN NaN NaN NaN NaN 91.293 1 91.293 90.793 91.793 0 0 0 0 0.9435 1 50490 50490 0 0 1 + 28376 20936 18968 19338 33387 33387 0.23875442241455858 KRFLLLWI 8 Unmodified _KRFLLLWI_ 0 0 0 REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8538208007812 2 544.852587 1087.69062 NaN NaN NaN NaN NaN NaN NaN 106.18 1 100 99.505 100.5 -6.1757 0 0 0 0.97444 1 71088 71088 2.5775 0.27475 1 + 28377 28213 18969 19339 33388 33388 0.1502838374995008 KRFLLLWI 8 Unmodified _KRFLLLWI_ 0 0 0 REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8525390625 2 544.852587 1087.69062 NaN NaN NaN NaN NaN NaN NaN 106.53 1 100.35 99.85 100.85 -6.1757 0 0 0 0.97444 1 71302 71302 0.79363 0.10326 1 + 28378 28213 18969 19339 33389 33389 0.1502838374995008 KRFLLLWI 8 Unmodified _KRFLLLWI_ 0 0 0 REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF REV__ENST00000515330.5_1_4:113345070-113346839:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.851318359375 2 544.852587 1087.69062 NaN NaN NaN NaN NaN NaN NaN 107.06 1 100.88 100.38 101.38 -6.1757 0 0 0 0.97444 1 71628 71628 0.79363 0.10326 1 + 28379 28213 18969 19339 33390 33390 0.1502838374995008 KRFNWSLNL 9 Unmodified _KRFNWSLNL_ 0 0 0 nc|ENSG00000159917|Q14590-2|ZNF235;ENSG00000159917|ENST00000291182|ZNF235 nc|ENSG00000159917|Q14590-2|ZNF235 nc|ENSG00000159917|Q14590-2|ZNF235 MSMS AL20221201_MKP_PDAC_01 4 589.3299560546875 2 589.327465 1176.64038 NaN NaN NaN NaN NaN NaN NaN 21.814 1 19.079 18.579 19.579 -2.7348 0 0 0 0.63508 1 11706 11706 3.9444 0 1 28380 6679 18970 19340 33391 33391 0.05912229354134979 KRFRTWRMSIP 11 Unmodified _KRFRTWRMSIP_ 0 0 0 REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.6136474609375 3 493.278479 1476.81361 0.12638 6.2341E-05 2.2311 0.0011006 2.3575 0.0011629 493.2799474087865 32.549 0.25722 32.579 32.44 32.698 0.029743 18 9 3 0 0 0 0.70435 1 17076 17076 3.8459 2.6311 1 1126200 + 28381 25198 18971 19341 33392 33392 0.09427272138896114 KRFRTWRMSIP 11 Unmodified _KRFRTWRMSIP_ 0 0 0 REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2805480957031 3 493.278479 1476.81361 1.2245 0.00060403 1.384 0.00068272 2.6086 0.0012867 493.27952301695274 37.255 0.17994 32.972 32.843 33.023 -4.2835 16 10 3 0 0 0 0.70435 1 21874 21874 3.8459 0.77364 1 5254700 + 28382 25198 18971 19341 33393 33393 0.09427272138896114 KRFRTWRMSIP 11 Unmodified _KRFRTWRMSIP_ 0 0 0 REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 493.278479 1476.81361 0.12638 6.2341E-05 2.2311 0.0011006 2.3575 0.0011629 493.2799474087865 32.549 0.25722 32.579 32.44 32.698 0.029743 -0.19642 0.0003874 NaN 3.8459 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1126200 + 28383 25198 18971 19341 0.09427272138896114 KRFRTWRMSIP 11 Unmodified _KRFRTWRMSIP_ 0 0 0 REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF REV__ENST00000281523.7_1_3:21606151-21706421:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 493.278479 1476.81361 1.2245 0.00060403 1.384 0.00068272 2.6086 0.0012867 493.27952301695274 37.255 0.17994 32.972 32.843 33.023 -4.2835 0.19642 -0.0008661 NaN 3.8459 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5254700 + 28384 25198 18971 19341 0.09427272138896114 KRFSEPQKL 9 Unmodified _KRFSEPQKL_ 0 0 0 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2203063964844 3 378.220624 1131.64004 0.083414 3.1549E-05 0.809 0.00030598 0.89241 0.00033753 378.22077146930667 19.368 0.16188 19.376 19.319 19.481 0.0078506 12 9 2 0 0 0 0.56345 1 9868 9868 2.086 0 1 506240 28385 2847 18972 19342 33394 33394 0.0794880963428568 KRFSYLLIL 9 Unmodified _KRFSYLLIL_ 0 0 0 ENST00000582491.5_1_17:43697732-43699336:+|nuORF ENST00000582491.5_1_17:43697732-43699336:+|nuORF ENST00000582491.5_1_17:43697732-43699336:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3228149414062 2 576.860609 1151.70667 0.59807 0.000345 -0.19593 -0.00011302 0.40215 0.00023198 576.8596807183458 70.081 0.21212 70.116 70.04 70.252 0.035515 12 10 2 0 0 0 0.19994 1 38588 38588 7.9102 0 1 1945600 28386 15573 18973 19343 33395 33395 0.1368804519618152 KRFYWWEFIL 10 Unmodified _KRFYWWEFIL_ 0 0 0 REV__nc|ENSG00000004866|Q9NRC1-7|ST7;REV__ENST00000487459.5_1_7:116660544-116830896:+|nuORF REV__nc|ENSG00000004866|Q9NRC1-7|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 744.39599609375 2 744.395348 1486.77614 0.28297 0.00021064 -1.8605 -0.001385 -1.5776 -0.0011743 744.394039449218 85.554 0.31144 85.053 84.964 85.276 -0.5015 43 23 2 0 0 0 0.72196 1 46907 46907 0.45834 0.10771 1 3725600 + 28387 16956;27827 18974 19344 33396 33396 0.05222504144944651 KRGAQKSS 8 Unmodified _KRGAQKSS_ 0 0 0 ENST00000511723.2_1_4:26875429-26875720:-|nuORF ENST00000511723.2_1_4:26875429-26875720:-|nuORF ENST00000511723.2_1_4:26875429-26875720:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.2468566894531 2 431.248683 860.482814 -0.48324 -0.0002084 -1.9015 -0.00082001 -2.3847 -0.0010284 431.2475881166385 106.11 0.24529 106.06 105.96 106.21 -0.048103 14 8 2 0 0 0 0.80763 1 58836 58836 2.0598 0 1 3372200 28388 14610 18975 19345 33397 33397 0.046991498147690436 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.5538940429688 3 359.553603 1075.63898 0.21058 7.5716E-05 0.080244 2.8852E-05 0.29083 0.00010457 359.55367154987556 54.15 0.29374 53.683 53.547 53.841 -0.46664 33 14 3 0 0 0 0.171 1 29305 29305 26.021 11.064 1 9314800 28389 294 18976 19346 33398 33398 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8268432617188 2 538.826766 1075.63898 0.10347 5.5753E-05 0.11066 5.9627E-05 0.21413 0.00011538 538.8267875475998 54.181 0.31478 53.714 53.526 53.841 -0.46664 42 15 4 0 0 0 0.060956 1 29332 29332 31.268 0 1 9758100 28390 294 18976 19346 33399 33399 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8265380859375 2 538.826766 1075.63898 -0.26791 -0.00014436 -0.17992 -9.6943E-05 -0.44783 -0.0002413 538.8270876376884 53.783 0.23105 53.716 53.632 53.863 -0.066936 23 14 2 0 0 0 0.060956 1 29182 29182 38.176 1.7094 1 5399900 28391 294 18976 19346 33400 33400 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.55322265625 3 359.553603 1075.63898 -0.35612 -0.00012804 0.22631 8.1372E-05 -0.12981 -4.6672E-05 359.55355717881196 53.771 0.23105 53.706 53.634 53.865 -0.065094 23 14 2 0 0 0 0.31356 1 29185 29185 16.566 6.8016 1 3858700 28392 294 18976 19346 33401 33401 0.1041859526535518 KRGDVIYIL 9 Unmodified _KRGDVIYIL_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 359.553603 1075.63898 0.4407 0.00015846 0.69709 0.00025064 1.1378 0.0004091 359.55390520167845 53.771 0.17085 53.771 53.705 53.876 0 0.051412 0.00048973 NaN 26.021 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 862380 28393 294 18976 19346 0.1041859526535518 KRGGCAVP 8 Unmodified _KRGGCAVP_ 0 0 0 ENST00000488380.5_1_3:52514938-52515118:+|nuORF;ENST00000489895.5_1_3:52514938-52524786:+|nuORF ENST00000488380.5_1_3:52514938-52515118:+|nuORF ENST00000488380.5_1_3:52514938-52515118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2151489257812 2 394.215798 786.417042 0.22971 9.0555E-05 -1.682 -0.00066306 -1.4523 -0.00057251 394.21507591213987 41.095 0.23146 40.792 40.678 40.909 -0.30304 15 10 2 0 0 0 0.80624 1 21768 21768 2.8892 2.0956 1 1607100 28394 14219 18977 19347 33402 33402 0.015290373681978053 KRGGCAVP 8 Unmodified _KRGGCAVP_ 0 0 0 ENST00000488380.5_1_3:52514938-52515118:+|nuORF;ENST00000489895.5_1_3:52514938-52524786:+|nuORF ENST00000488380.5_1_3:52514938-52515118:+|nuORF ENST00000488380.5_1_3:52514938-52515118:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 394.215798 786.417042 0.21153 8.3388E-05 -2.5889 -0.0010206 -2.3774 -0.00093722 394.21465810995716 40.778 0.53323 40.776 40.626 41.159 -0.0017929 0.00392 -0.00027324 NaN 2.8892 60 25 3 NaN NaN NaN NaN 0 NaN NaN 0 19022000 28395 14219 18977 19347 0.015290373681978053 KRGKILRYV 9 Unmodified _KRGKILRYV_ 0 0 0 REV__ENSG00000078061|ENST00000377045|ARAF REV__ENSG00000078061|ENST00000377045|ARAF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.50732421875 3 378.248625 1131.72405 NaN NaN NaN NaN NaN NaN NaN 43.128 1 43.128 42.628 43.628 0 0 0 0 0.85359 1 23402 23402 1.0715 0.29493 1 + 28396 17621 18978 19348 33403 33403 0.1634538552182221 KRGKPAPC 8 Unmodified _KRGKPAPC_ 0 0 0 REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF REV__ENST00000427177.5_1_17:75495131-75495422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.7439270019531 2 428.744722 855.474891 0.07408 3.1761E-05 -1.4854 -0.00063687 -1.4114 -0.00060511 428.744009788001 65.523 0.41202 65.523 65.347 65.759 0 49 16 4 0 0 0 0.80992 1 36529 36529 0.69038 0.69038 1 13135000 + 28397 26918 18979 19349 33404 33404 0.041372992936203445 KRGLLRHRV 9 Unmodified _KRGLLRHRV_ 0 0 0 REV__ENST00000575894.1_1_16:697354-697711:+|nuORF REV__ENST00000575894.1_1_16:697354-697711:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8702392578125 2 567.870166 1133.72578 NaN NaN NaN NaN NaN NaN NaN 105.09 1 105.04 104.54 105.54 -0.048737 0 0 0 0.85798 1 58327 58327 0.52476 0 1 + 28398 29019 18980 19350 33405 33405 0.1642643933043928 KRHCHQLL 8 Unmodified _KRHCHQLL_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.78759765625 2 517.787453 1033.56035 0.5538 0.00028675 -1.3265 -0.00068682 -0.77266 -0.00040007 517.7869846583326 47.586 0.18232 47.233 47.125 47.308 -0.3526 14 8 2 0 0 0 0.67481 1 25520 25520 19.439 0.18201 1 2292600 28399 3276 18981 19351 33406 33406 0.044914644792925174 KRHHVAGP 8 Unmodified _KRHHVAGP_ 0 0 0 ENST00000495718.5_1_1:59787216-59811973:+|nuORF ENST00000495718.5_1_1:59787216-59811973:+|nuORF ENST00000495718.5_1_1:59787216-59811973:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2580871582031 2 451.259385 900.504218 NaN NaN NaN NaN NaN NaN NaN 69.513 1 69.544 69.044 70.044 0.030914 0 0 0 0.97444 1 38214 38214 2.5775 0.27475 1 28400 14357 18982 19352 33407 33407 0.04998579634127509 KRHLTYAEF 9 Unmodified _KRHLTYAEF_ 0 0 0 ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8778076171875 3 388.876857 1163.60874 -0.001479 -5.7516E-07 0.083166 3.2342E-05 0.081687 3.1766E-05 388.8767863985729 18.543 0.59471 18.549 18.244 18.839 0.0060463 58 33 3 0 0 0 0.52844 1 9349 9349 5.7319 2.6596 1 1234700 28401 288 18983 19353 33408 33408 0.033482366001635455 KRHLTYAEF 9 Unmodified _KRHLTYAEF_ 0 0 0 ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 ENSG00000004864|ENST00000265631|SLC25A13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8774108886719 3 388.876857 1163.60874 0.53178 0.0002068 0.88771 0.00034521 1.4195 0.00055201 388.8770376721688 16.558 0.41344 14.002 13.813 14.226 -2.557 105 63 2 0 0 0 0.54213 1 8635 8635 4.897 4.897 1 3950400 28402 288 18983 19353 33409 33409 0.033482366001635455 KRIIIKGVD 9 Unmodified _KRIIIKGVD_ 0 0 0 ENST00000487643.1_1_3:183240843-183262455:-|nuORF;ENST00000489245.5_1_3:183211997-183273441:-|nuORF;ENSG00000172578|ENST00000341319|KLHL6 ENST00000487643.1_1_3:183240843-183262455:-|nuORF ENST00000487643.1_1_3:183240843-183262455:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.3426513671875 2 521.342584 1040.67061 1.6707 0.00087099 0.9569 0.00049887 2.6276 0.0013699 521.3434375874059 103.6 0.16355 97.421 97.331 97.495 -6.1757 64 32 3 0 0 0 0.61381 1 69442 69442 0.52476 0 1 15667000 28403 8235 18984 19354 33410 33410 0.1519058801934534 KRITKRLRKHR 11 Unmodified _KRITKRLRKHR_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 746.4935913085938 2 746.494585 1490.97462 NaN NaN NaN NaN NaN NaN NaN 104.05 1 104 103.5 104.5 -0.048737 0 0 0 0.9435 1 57774 57774 0 0 1 28404 10553 18985 19355 33411 33411 0.24876782567116607 KRKCEQQL 8 Unmodified _KRKCEQQL_ 0 0 0 REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7841796875 2 516.784576 1031.5546 0.28545 0.00014752 -0.19506 -0.0001008 0.090394 4.6714E-05 516.78466736274 87.913 0.15651 87.913 87.855 88.011 0 10 7 2 0 0 0 0.80676 1 48692 48692 2.5775 0 1 199550 + 28405 25633 18986 19356 33412 33412 0.040083211769797344 KRKCEQQL 8 Unmodified _KRKCEQQL_ 0 0 0 REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.784576 1031.5546 0.28545 0.00014752 -0.19506 -0.0001008 0.090394 4.6714E-05 516.78466736274 87.913 0.15651 87.913 87.855 88.011 0 0 0 NaN 2.5775 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 199550 + 28406 25633 18986 19356 0.040083211769797344 KRKDEKKEA 9 Unmodified _KRKDEKKEA_ 0 0 0 REV__nc|ENSG00000205955|Q58FG0|HSP90AA5P REV__nc|ENSG00000205955|Q58FG0|HSP90AA5P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8871154785156 3 377.887533 1130.64077 NaN NaN NaN NaN NaN NaN NaN 17.749 1 17.749 17.249 18.249 0 0 0 0 0.85029 1 8771 8771 0.77653 0 1 + 28407 29919 18987 19357 33413 33413 0.0806760428333746 KRKFVKFL 8 Unmodified _KRKFVKFL_ 0 0 0 ENST00000313733.7_1_20:60831126-60831171:+|nuORF ENST00000313733.7_1_20:60831126-60831171:+|nuORF ENST00000313733.7_1_20:60831126-60831171:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.9033508300781 3 355.902567 1064.68587 0.56429 0.00020083 1.4585 0.00051908 2.0228 0.00071991 355.9029065311447 57.028 0.51657 56.962 56.58 57.097 -0.066757 63 25 3 0 0 0 0.81107 2 30944 30944;31051 0 0 1 5792200 28408 11719 18988 19358 33414;33415 33414 0.15611499607189216 KRKGYSYEL 9 Unmodified _KRKGYSYEL_ 0 0 0 nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2 nc|ENSG00000160293|P52735-3|VAV2 nc|ENSG00000160293|P52735-3|VAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8765258789062 3 381.876746 1142.60841 0.6348 0.00024241 -1.8748 -0.00071593 -1.24 -0.00047352 381.876171013119 23.733 0.24131 20.906 20.741 20.983 -2.8273 21 14 2 0 0 0 0.39143 1 12842 12842 12.873 6.6808 1 2742800 28409 6713 18989 19359 33416 33416 0.0428081688032762 KRKKIRKKEL 10 Unmodified _KRKKIRKKEL_ 0 0 0 REV__ENSG00000198873|ENST00000392870|GRK5 REV__ENSG00000198873|ENST00000392870|GRK5 MSMS AL20221201_MKP_PDAC_01 4 442.974609375 3 442.973384 1325.89832 NaN NaN NaN NaN NaN NaN NaN 40.268 1 35.739 35.239 36.239 -4.5294 0 0 0 1.0047 1 24031 24031 0.15932 0 1 + 28410 24085 18990 19360 33417 33417 0.24840965947169025 KRKKKKKF 8 Unmodified _KRKKKKKF_ 0 0 0 nc|ENSG00000168594|Q9UKF5-2|ADAM29;nc|ENSG00000168594|Q9UKF5-3|ADAM29;ENSG00000168594|ENST00000359240|ADAM29;ENST00000216797.9_1_14:35871071-35871197:-|nuORF nc|ENSG00000168594|Q9UKF5-2|ADAM29;ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5252075195312 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 28.45 1 28.45 27.95 28.95 0 0 0 0 0.97444 1 14696 14696 0.45834 0.45834 1 28411 11014;7783 18991 19361 33418 33418 0.2085827976411565 KRKKKKKFKG 10 Unmodified _KRKKKKKFKG_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 638.4403686523438 2 638.440424 1274.86629 NaN NaN NaN NaN NaN NaN NaN 106.07 1 99.899 99.399 100.4 -6.1757 0 0 0 1.0019 1 71026 71026 0.45834 0 1 28412 11014 18992 19362 33419 33419 0.2398559826399378 KRKKMIVKK 9 Unmodified _KRKKMIVKK_ 0 0 0 REV__ENSG00000088882|ENST00000380605|CPXM1 REV__ENSG00000088882|ENST00000380605|CPXM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1158.615234375 1 1158.78673 1157.77945 -0.019531 -2.2633E-05 1.271 0.0014728 1.2515 0.0014502 1158.7892676027 42.837 0.10307 42.527 42.484 42.587 -0.31039 6 4 2 0 0 0 0.2191 1 22752 22752 0 0 1 4077400 + 28413 17816 18993 19363 33420 33420 0.2068747571795484 KRKPLGVG 8 Unmodified _KRKPLGVG_ 0 0 0 ENSG00000081177|ENST00000685843|EXD2;nc|ENSG00000081177|Q9NVH0-2|EXD2 ENSG00000081177|ENST00000685843|EXD2 ENSG00000081177|ENST00000685843|EXD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 854.6492919921875 1 854.557047 853.549771 1.4255 0.0012182 1.251 0.001069 2.6765 0.0022872 854.5560372523638 105.49 0.12627 99.312 99.249 99.375 -6.1757 36 19 3 0 0 0 8.7369 1 70714 70714 0 0 1 15139000 28414 1319 18994 19364 33421 33421 0.11713805096530905 KRKQKTIPR 9 Unmodified _KRKQKTIPR_ 0 0 0 ENST00000416382.6_1_10:11373873-11374074:+|nuORF ENST00000416382.6_1_10:11373873-11374074:+|nuORF ENST00000416382.6_1_10:11373873-11374074:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.8720397949219 3 385.58753 1153.74076 NaN NaN NaN NaN NaN NaN NaN 41.468 1 36.86 36.36 37.36 -4.6079 0 0 0 0.84543 1 24907 24907 2.086 0.34373 1 28415 13042 18995 19365 33422 33422 0.1700388640779238 KRKRRRRRSPR 11 Unmodified _KRKRRRRRSPR_ 0 0 0 ENST00000467963.5_3_5:889215-891867:-|nuORF;nc|ENSG00000028310|Q9H8M2-6|BRD9 ENST00000467963.5_3_5:889215-891867:-|nuORF ENST00000467963.5_3_5:889215-891867:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 518.0059814453125 3 518.004963 1550.99306 NaN NaN NaN NaN NaN NaN NaN 15.137 1 12.61 12.11 13.11 -2.5273 0 0 0 0.9435 1 7741 7741 0 0 1 28416 13795 18996 19366 33423 33423 0.23960337261723907 KRKSKKTKSF 10 Unmodified _KRKSKKTKSF_ 0 0 0 REV__nc|ENSG00000084093|Q13127-4|REST REV__nc|ENSG00000084093|Q13127-4|REST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.1908569335938 2 619.390596 1236.76664 NaN NaN NaN NaN NaN NaN NaN 73.063 1 72.587 72.087 73.087 -0.47588 0 0 0 1.0019 1 39982 39982 0.45834 0 1 + 28417 17730 18997 19367 33424 33424 0.157727358594002 KRKTHRLL 8 Unmodified _KRKTHRLL_ 0 0 0 ENST00000475185.5_1_18:20877812-20889646:-|nuORF ENST00000475185.5_1_18:20877812-20889646:-|nuORF ENST00000475185.5_1_18:20877812-20889646:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.2337646484375 3 351.233087 1050.67743 NaN NaN NaN NaN NaN NaN NaN 46.525 1 41.445 40.945 41.945 -5.0805 0 0 0 0.97444 1 28761 28761 1.6526 0.45928 1 28418 13955 18998 19368 33425 33425 0.15411945690539142 KRLHKRKKRKK 11 Unmodified _KRLHKRKKRKK_ 0 0 0 REV__ENSG00000204560|ENST00000376442|DHX16 REV__ENSG00000204560|ENST00000376442|DHX16 MSMS AL20221201_MKP_PDAC_01 4 753.5176391601562 2 753.520602 1505.02665 NaN NaN NaN NaN NaN NaN NaN 26.021 1 23.07 22.57 23.57 -2.9511 0 0 0 0.9435 1 14296 14296 0 0 1 + 28419 24182 18999 19369 33426 33426 0.2943394598087252 KRLLALDPM 9 Unmodified _KRLLALDPM_ 0 0 0 ENSG00000101109|ENST00000372806|STK4;ENST00000372801.5_1_20:43681806-43703814:+|nuORF ENSG00000101109|ENST00000372806|STK4 ENSG00000101109|ENST00000372806|STK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8788757324219 3 352.879322 1055.61614 -0.035144 -1.2402E-05 -0.5773 -0.00020372 -0.61244 -0.00021612 352.8789432961905 41.044 0.86751 41.042 40.773 41.64 -0.0017929 66 41 2 0 0 0 0.59218 1 22218 22218 0.96228 0 1 5406600 28420 1913 19000 19370 33427 33427 0.09055252876237319 KRLLILRLPLL 11 Unmodified _KRLLILRLPLL_ 0 0 0 REV__ENST00000507606.2_1_7:135359974-135360067:+|nuORF REV__ENST00000507606.2_1_7:135359974-135360067:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 674.4843139648438 2 674.481757 1346.94896 NaN NaN NaN NaN NaN NaN NaN 17.395 1 17.4 16.9 17.9 0.0050564 0 0 0 0.9435 1 8772 8772 0 0 1 + 28421 28105 19001 19371 33428 33428 0.28936495272182583 KRLLRKLNILY 11 Unmodified _KRLLRKLNILY_ 0 0 0 REV__ENST00000361908.7_1_3:193374935-193376676:+|nuORF REV__ENST00000361908.7_1_3:193374935-193376676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.4703979492188 2 715.471921 1428.92929 1.3436 0.00096132 -2.0154 -0.001442 -0.67181 -0.00048066 715.4703558192409 104.25 0.092926 98.079 98.014 98.107 -6.1757 7 4 2 0 0 0 0.74203 1 69839 69839 0.30703 0.03801 1 13345000 + 28422 25944 19002 19372 33429 33429 0.23198119261428474 KRLPQRRR 8 Unmodified _KRLPQRRR_ 0 0 0 REV__ENSG00000187166|ENST00000335017|H1-7 REV__ENSG00000187166|ENST00000335017|H1-7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.5502624511719 3 370.575736 1108.70538 -0.28734 -0.00010648 -1.6171 -0.00059928 -1.9045 -0.00070576 370.5750283233648 36.825 0.25907 36.847 36.767 37.026 0.021545 20 11 2 0 0 0 8.7369 1 19527 19527 1.6526 0.45928 1 3771700 + 28423 23625 19003 19373 33430 33430 0.15537268670641424 KRLSNRYPV 9 Unmodified _KRLSNRYPV_ 0 0 0 REV__ENSG00000085563|ENST00000622132|ABCB1 REV__ENSG00000085563|ENST00000622132|ABCB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2244262695312 3 378.224368 1131.65128 NaN NaN NaN NaN NaN NaN NaN 104.54 1 104.5 104 105 -0.048737 0 0 0 0.86004 1 58046 58046 0.26902 0 1 + 28424 17754 19004 19374 33431 33431 0.09071631728397733 KRMMKTWTL 9 Unmodified _KRMMKTWTL_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP;ENST00000473914.1_1_5:96332105-96341995:+|nuORF nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8283081054688 2 597.827929 1193.6413 -0.6204 -0.00037089 -0.38488 -0.00023009 -1.0053 -0.00060098 597.8277334170641 17.48 0.1915 17.48 17.355 17.547 0 63 29 3 0 0 0 0.54816 1 8593 8593 3.9444 0.3479 1 1266900 28425 2967 19005 19375 33432 33432 0.05222984407168951 KRMMKTWTL 9 Unmodified _KRMMKTWTL_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP;ENST00000473914.1_1_5:96332105-96341995:+|nuORF nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.828369140625 2 597.827929 1193.6413 0.24606 0.0001471 -0.42811 -0.00025594 -0.18205 -0.00010884 597.8276899212699 18.626 0.2318 16.005 15.844 16.076 -2.6215 38 25 2 0 0 0 0.35911 1 9776 9776 6.2058 0.9089 1 2559700 28426 2967 19005 19375 33433 33433 0.05222984407168951 KRMMKTWTL 9 Unmodified _KRMMKTWTL_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP;ENST00000473914.1_1_5:96332105-96341995:+|nuORF nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 597.827929 1193.6413 -0.6204 -0.00037089 -0.38488 -0.00023009 -1.0053 -0.00060098 597.8277334170641 17.48 0.1915 17.48 17.355 17.547 0 0 0 NaN 3.9444 63 29 3 NaN NaN NaN NaN 0 NaN NaN 0 1266900 28427 2967 19005 19375 0.05222984407168951 KRMNFPIFAA 10 Unmodified _KRMNFPIFAA_ 0 0 0 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8270263671875 2 597.826243 1193.63793 NaN NaN NaN NaN NaN NaN NaN 19.251 1 19.251 18.751 19.751 0 0 0 0 0.94014 1 9617 9617 6.2058 0.47393 1 28428 9220 19006 19376 33434 33434 0.0488605762482166 KRNDYVHAL 9 Unmodified _KRNDYVHAL_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5370788574219 3 372.536724 1114.58834 0.82364 0.00030684 0.59941 0.0002233 1.4231 0.00053014 372.53719825628053 24.525 0.40492 21.698 21.486 21.891 -2.8273 48 22 3 0 0 0 0.05447 1 13338 13338 33.445 21.27 1 18607000 28429 3948 19007 19377 33435 33435 0.03563065940352317 KRNISPKI 8 Unmodified _KRNISPKI_ 0 0 0 ENSG00000127364|ENST00000247881|TAS2R4 ENSG00000127364|ENST00000247881|TAS2R4 ENSG00000127364|ENST00000247881|TAS2R4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3057861328125 2 478.306001 954.597449 0.73903 0.00035348 0.30225 0.00014457 1.0413 0.00049805 478.30616667072206 18.305 0.24475 15.684 15.548 15.793 -2.6215 41 18 3 0 0 0 0.64853 1 9588 9588 21.747 0 1 7987200 28430 4002 19008 19378 33436 33436 0.11833459296701676 KRNSVRLV 8 Unmodified _KRNSVRLV_ 0 0 0 ENST00000573886.5_1_17:4620541-4621453:+|nuORF;nc|ENSG00000141480|P32121-5|ARRB2;nc|ENSG00000141480|P32121-2|ARRB2;ENSG00000141480|ENST00000269260|ARRB2;nc|ENSG00000137486|P49407-2|ARRB1;ENSG00000137486|ENST00000420843|ARRB1;nc|ENSG00000141480|P32121-3|ARRB2;nc|ENSG00000141480|P32121-4|ARRB2 ENST00000573886.5_1_17:4620541-4621453:+|nuORF ENST00000573886.5_1_17:4620541-4621453:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3113098144531 2 486.309075 970.603597 1.5917 0.00077405 2.6176 0.001273 4.2093 0.002047 486.3103694811531 104.72 0.11168 98.549 98.476 98.588 -6.1757 20 12 2 0 0 0 0.80676 1 70118 70118 2.5775 0.51773 1 8626400 28431 4937 19009 19379 33437 33437 0.11711977528239004 KRPDFHKIL 9 Unmodified _KRPDFHKIL_ 0 0 0 REV__ENSG00000101158|ENST00000652272|NELFCD REV__ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2337036132812 3 385.232864 1152.67676 0.060151 2.3172E-05 0.44037 0.00016965 0.50052 0.00019282 385.2332535374474 28.735 0.70458 28.764 28.569 29.274 0.029564 49 28 4 0 0 0 0.18255 1 14950 14950 24.882 4.467 1 36620000 + 28432 18136 19010 19380 33438 33438 0.10653106250833844 KRPDFHKIL 9 Unmodified _KRPDFHKIL_ 0 0 0 REV__ENSG00000101158|ENST00000652272|NELFCD REV__ENSG00000101158|ENST00000652272|NELFCD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.232864 1152.67676 0.060151 2.3172E-05 0.44037 0.00016965 0.50052 0.00019282 385.2332535374474 28.735 0.70458 28.764 28.569 29.274 0.029564 -0.0095947 -0.0003234 NaN 24.882 49 28 4 NaN NaN NaN NaN 0 NaN NaN 0 36620000 + 28433 18136 19010 19380 0.10653106250833844 KRPHIKKP 8 Unmodified _KRPHIKKP_ 0 0 0 nc|ENSG00000138795|Q9UJU2-6|LEF1;nc|ENSG00000138795|Q9UJU2-5|LEF1;ENSG00000138795|ENST00000265165|LEF1;nc|ENSG00000138795|Q9UJU2-3|LEF1;nc|ENSG00000138795|Q9UJU2-7|LEF1 nc|ENSG00000138795|Q9UJU2-6|LEF1 nc|ENSG00000138795|Q9UJU2-6|LEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3284301757812 2 502.329811 1002.64507 NaN NaN NaN NaN NaN NaN NaN 104.42 1 104.37 103.87 104.87 -0.048737 0 0 0 0.97444 1 57975 57975 0.69038 0 1 28434 16227 19011 19381 33439 33439 0.14385158287552713 KRPIPLCS 8 Unmodified _KRPIPLCS_ 0 0 0 ENSG00000159445|ENST00000368814|THEM4 ENSG00000159445|ENST00000368814|THEM4 ENSG00000159445|ENST00000368814|THEM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2904052734375 2 457.26803 912.521507 0.20007 9.1484E-05 0.51184 0.00023405 0.7119 0.00032553 457.2680234106528 37.766 0.18663 37.783 37.673 37.859 0.01704 13 8 2 0 0 0 8.7369 1 20034 20034 11.64 3.047 1 1394600 28435 6656 19012 19382 33440 33440 0.06174739124912776 KRPQRKAHS 9 Unmodified _KRPQRKAHS_ 0 0 0 REV__ENSG00000113396|ENST00000262462|SLC27A6 REV__ENSG00000113396|ENST00000262462|SLC27A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.327392578125 2 554.328331 1106.64211 -0.46343 -0.00025689 -2.1705 -0.0012032 -2.634 -0.0014601 554.3268585396366 102.11 0.11747 102.07 101.99 102.11 -0.045853 5 3 2 0 0 0 0.59218 1 56744 56744 1.8442 1.3195 1 2628100 + 28436 18865 19013 19383 33441 33441 0.09305283162757405 KRPQRKAHS 9 Unmodified _KRPQRKAHS_ 0 0 0 REV__ENSG00000113396|ENST00000262462|SLC27A6 REV__ENSG00000113396|ENST00000262462|SLC27A6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.328331 1106.64211 -0.46343 -0.00025689 -2.1705 -0.0012032 -2.634 -0.0014601 554.3268585396366 102.11 0.11747 102.07 101.99 102.11 -0.045853 0 0 NaN 1.8442 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2628100 + 28437 18865 19013 19383 0.09305283162757405 KRPRCPLNY 9 Unmodified _KRPRCPLNY_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.3139038085938 2 573.813667 1145.61278 0.14254 8.1794E-05 -1.9366 -0.0011113 -1.7941 -0.0010295 573.8131019204819 39.726 0.26569 39.429 39.264 39.53 -0.29716 22 12 2 0 0 0 0.41742 1 20934 20934 11.64 0 1 5628500 28438 3705 19014 19384 33442 33442 0.045800028222402034 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5492248535156 3 378.548629 1132.62406 0.36344 0.00013758 0.56925 0.00021549 0.93269 0.00035307 378.5487424624377 49.92 0.29701 49.92 49.735 50.032 0 26 13 3 0 0 0 0.15471 1 27476 27476 26.021 9.4548 1 2938900 28439 7104 19015 19385 33443 33443 0.06305103397380662 KRQEAIFEL 9 Unmodified _KRQEAIFEL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 ENSG00000163947|ENST00000296315|ARHGEF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5483093261719 3 378.548629 1132.62406 0.83761 0.00031708 -0.62407 -0.00023624 0.21354 8.0836E-05 378.54850659640573 50.149 0.24538 49.757 49.627 49.872 -0.3923 26 11 3 0 0 0 0.40476 1 26997 26997 8.4443 0 1 2136000 28440 7104 19015 19385 33444 33444 0.06305103397380662 KRQKRRRRRRR 11 Unmodified _KRQKRRRRRRR_ 0 0 0 REV__ENSG00000184205|ENST00000375442|TSPYL2 REV__ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20221201_MKP_PDAC_01 4 551.3624267578125 3 551.363262 1651.06796 NaN NaN NaN NaN NaN NaN NaN 107.29 1 101.11 100.61 101.61 -6.1757 0 0 0 0.9435 1 71768 71768 0 0 1 + 28441 23405 19016 19386 33445 33445 0.2684651979291175 KRQKRRRRRRR 11 Unmodified _KRQKRRRRRRR_ 0 0 0 REV__ENSG00000184205|ENST00000375442|TSPYL2 REV__ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20221201_MKP_PDAC_01 4 551.3619995117188 3 551.363262 1651.06796 NaN NaN NaN NaN NaN NaN NaN 109.9 1 103.72 103.22 104.22 -6.1757 0 0 0 0.9435 1 73369 73369 0 0 1 + 28442 23405 19016 19386 33446 33446 0.2684651979291175 KRRCCSWY 8 Unmodified _KRRCCSWY_ 0 0 0 REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.8410949707031 3 367.840873 1100.50079 NaN NaN NaN NaN NaN NaN NaN 8.3526 1 5.8706 5.3706 6.3706 -2.482 0 0 0 0.97444 1 4215 4215 0.45834 0 1 + 28443 18695 19017 19387 33447 33447 -0.04544174526381539 KRRGTLIL 8 Unmodified _KRRGTLIL_ 0 0 0 REV__ENST00000360003.7_1_10:121619357-121632104:-|nuORF REV__ENST00000360003.7_1_10:121619357-121632104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.8222045898438 2 478.821818 955.629084 -0.58098 -0.00027818 0.54865 0.0002627 -0.032329 -1.548E-05 478.8220056458022 103.11 0.37668 103.06 102.88 103.26 -0.04792 26 15 2 0 0 0 0.81107 1 57238 57238 0 0 1 1573200 + 28444 25904 19018 19388 33448 33448 0.14949452050677792 KRRGVYGK 8 Unmodified _KRRGVYGK_ 0 0 0 ENST00000368218.8_2_1:156698377-156698662:+|nuORF ENST00000368218.8_2_1:156698377-156698662:+|nuORF ENST00000368218.8_2_1:156698377-156698662:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.2981262207031 2 482.295968 962.577383 NaN NaN NaN NaN NaN NaN NaN 106.56 1 100.39 99.886 100.89 -6.1757 0 0 0 0.97444 1 71324 71324 0.69038 0 1 28445 12262 19019 19389 33449 33449 0.09459708356757801 KRRIGGLL 8 Unmodified _KRRIGGLL_ 0 0 0 REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.8082580566406 2 456.808711 911.602869 -0.34479 -0.0001575 0.44376 0.00020272 0.09898 4.5215E-05 456.8088432382609 103.03 0.40016 102.99 102.81 103.21 -0.047928 29 16 2 0 0 0 0.81107 1 57196 57196 0 0 1 1336400 + 28446 28979 19020 19390 33450 33450 0.14353182879199267 KRRIGGLL 8 Unmodified _KRRIGGLL_ 0 0 0 REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 913.61474609375 1 912.610146 911.602869 1.1492 0.0010488 0.18966 0.00017309 1.3389 0.0012219 912.6104593342866 103.31 0.15409 97.134 97.076 97.23 -6.1757 59 39 2 0 0 0 0.81107 1 69254 69254 0 0 1 11428000 + 28447 28979 19020 19390 33451 33451 0.14353182879199267 KRRKKAKRKRK 11 Unmodified _KRRKKAKRKRK_ 0 0 0 REV__ENSG00000206432|ENST00000383490|TMEM200C REV__ENSG00000206432|ENST00000383490|TMEM200C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 742.0167236328125 2 742.018227 1482.0219 NaN NaN NaN NaN NaN NaN NaN 17.812 1 17.817 17.317 18.317 0.0050564 0 0 0 0.9435 1 9002 9002 0 0 1 + 28448 24254 19021 19391 33452 33452 0.3001706183811166 KRRKKRWRRKK 11 Unmodified _KRRKKRWRRKK_ 0 0 0 REV__nc|ENSG00000290320|P0DW85|H2BN1 REV__nc|ENSG00000290320|P0DW85|H2BN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.5430297851562 2 813.5424 1625.07025 NaN NaN NaN NaN NaN NaN NaN 103.56 1 103.51 103.01 104.01 -0.047928 0 0 0 0.9435 1 57511 57511 0 0 1 + 28449 30026 19022 19392 33453 33453 0.2827155547802249 KRRKRRRFNKK 11 Unmodified _KRRKRRRFNKK_ 0 0 0 REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 787.0123291015625 2 787.010933 1572.00731 NaN NaN NaN NaN NaN NaN NaN 92.415 1 86.239 85.739 86.739 -6.1757 0 0 0 0.9435 1 61115 61115 0 0 1 + 28450 27848 19023 19393 33454 33454 0.2441898969000249 KRRKSPPSP 9 Unmodified _KRRKSPPSP_ 0 0 0 REV__ENSG00000127804|ENST00000263092|METTL16 REV__ENSG00000127804|ENST00000263092|METTL16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8212890625 2 526.819807 1051.62506 NaN NaN NaN NaN NaN NaN NaN 104.61 1 104.56 104.06 105.06 -0.048737 0 0 0 0.86031 1 58083 58083 0.52476 0 1 + 28451 19590 19024 19394 33455 33455 0.1013136255696736 KRRKVPKKSP 10 Unmodified _KRRKVPKKSP_ 0 0 0 REV__nc|ENSG00000123737|Q06265-3|EXOSC9 REV__nc|ENSG00000123737|Q06265-3|EXOSC9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.406494140625 2 612.406581 1222.79861 1.5042 0.00092118 -1.3826 -0.0008467 0.12161 7.4477E-05 612.4057758148642 103.22 0.092812 97.046 97.01 97.102 -6.1757 50 28 2 0 0 0 0.72292 1 69214 69214 0.35063 0.043601 1 7684800 + 28452 19402 19025 19395 33456 33456 0.19612148333226287 KRRLDQCQQY 10 Unmodified _KRRLDQCQQY_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000393501.5_1_3:124103736-124207203:+|nuORF;nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENSG00000160145|ENST00000682506|KALRN nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000160145|O60229|KALRN nc|ENSG00000038382|O75962-2|TRIO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.3407592773438 2 669.340778 1336.667 NaN NaN NaN NaN NaN NaN NaN 101.47 1 101.43 100.93 101.93 -0.04216 0 0 0 0.99248 1 56374 56374 1.4819 0.15237 1 28453 636;16313 19026 19396 33457 33457 0.012135501831608053 KRRLIHGG 8 Unmodified _KRRLIHGG_ 0 0 0 nc|ENSG00000138463|Q96SL1-2|SLC49A4;ENSG00000138463|ENST00000261038|SLC49A4 nc|ENSG00000138463|Q96SL1-2|SLC49A4 nc|ENSG00000138463|Q96SL1-2|SLC49A4 MSMS AL20221201_MKP_PDAC_01 4 468.797119140625 2 468.796135 935.577717 NaN NaN NaN NaN NaN NaN NaN 107.19 1 101.01 100.51 101.51 -6.1757 0 0 0 0.97444 1 71708 71708 0 0 1 28454 5060 19027 19397 33458 33458 0.10735128076623823 KRRLLFFNN 9 Unmodified _KRRLLFFNN_ 0 0 0 ENST00000512874.1_1_4:186392695-186393388:+|nuORF ENST00000512874.1_1_4:186392695-186393388:+|nuORF ENST00000512874.1_1_4:186392695-186393388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.357177734375 2 604.356557 1206.69856 0.33869 0.00020469 0.53693 0.0003245 0.87562 0.00052919 604.3567850253474 97.777 1.0142 97.534 97.066 98.08 -0.24277 162 44 4 0 0 0 0.61381 4 53278 53278;53381;53493;53591 0.52476 0 1 181220000 28455 14628 19028 19398 33459;33460;33461;33462 33459 0.10347910999439591 KRRNKRKQRKK 11 Unmodified _KRRNKRKQRKK_ 0 0 0 REV__ENSG00000278311|ENST00000613102|GGNBP2 REV__ENSG00000278311|ENST00000613102|GGNBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 763.50390625 2 763.502941 1524.99133 NaN NaN NaN NaN NaN NaN NaN 90.923 1 90.96 90.46 91.46 0.036499 0 0 0 0.9435 1 50575 50575 0 0 1 + 28456 24670 19029 19399 33463 33463 0.24983283453093463 KRRPRRRPRRW 11 Unmodified _KRRPRRRPRRW_ 0 0 0 ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 810.50732421875 2 810.506349 1618.99815 NaN NaN NaN NaN NaN NaN NaN 102.26 1 96.086 95.586 96.586 -6.1757 0 0 0 0.9435 1 68629 68629 0 0 1 28457 11144 19030 19400 33464 33464 0.2134064112433407 KRRRKAAPLP 10 Unmodified _KRRRKAAPLP_ 0 0 0 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 ENSG00000092978|ENST00000366935|GPATCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8919677734375 2 596.891098 1191.76764 1.1066 0.00066053 0.4366 0.0002606 1.5432 0.00092113 596.8911977351945 105.1 0.20757 98.929 98.803 99.011 -6.1757 113 31 5 0 0 0 0.72196 1 70335 70335 0.45834 0.45834 1 2312500000 28458 1626 19031 19401 33465 33465 0.1794299501898422 KRRRLKRRRQL 11 Unmodified _KRRRLKRRRQL_ 0 0 0 REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__nc|ENSG00000188158|Q6T4R5-4|NHS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.8277587890625 2 783.524208 1565.03386 NaN NaN NaN NaN NaN NaN NaN 108.19 1 108.15 107.65 108.65 -0.047607 0 0 0 0.9435 1 59926 59926 0 0 1 + 28459 23693 19032 19402 33466 33466 0.27394678581322296 KRRRRKEKRKY 11 Unmodified _KRRRRKEKRKY_ 0 0 0 REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.7590942382812 2 802.508223 1603.00189 NaN NaN NaN NaN NaN NaN NaN 22.61 1 22.61 22.11 23.11 0 0 0 0 0.9435 1 11502 11502 0 0 1 + 28460 27678 19033 19403 33467 33467 0.2245126610753232 KRRRRKEKRKY 11 Unmodified _KRRRRKEKRKY_ 0 0 0 REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 802.75927734375 2 802.508223 1603.00189 NaN NaN NaN NaN NaN NaN NaN 22.673 1 22.696 22.196 23.196 0.022896 0 0 0 0.9435 1 11540 11540 0 0 1 + 28461 27678 19033 19403 33468 33468 0.2245126610753232 KRRRRQAT 8 Unmodified _KRRRRQAT_ 0 0 0 REV__ENSG00000283093|ENST00000634648|CENPVL2;REV__ENSG00000224109|ENST00000417339|CENPVL3 REV__ENSG00000224109|ENST00000417339|CENPVL3 MSMS AL20221201_MKP_PDAC_01 4 536.3369750976562 2 536.333947 1070.65334 NaN NaN NaN NaN NaN NaN NaN 108.83 1 102.66 102.16 103.16 -6.1757 0 0 0 0.97444 1 72717 72717 0.69038 0 1 + 28462 24378;24372 19034 19404 33469 33469 0.12084105256894873 KRRRRRRRWQW 11 Unmodified _KRRRRRRRWQW_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 870.5261840820312 2 870.522531 1739.03051 NaN NaN NaN NaN NaN NaN NaN 109.77 1 109.72 109.22 110.22 -0.047607 0 0 0 0.9435 1 60760 60760 0 0 1 28463 14194 19035 19405 33470 33470 0.19055428527326512 KRRRSRPWRLR 11 Unmodified _KRRRSRPWRLR_ 0 0 0 ENST00000370995.6_2_1:67891962-67895727:-|nuORF ENST00000370995.6_2_1:67891962-67895727:-|nuORF ENST00000370995.6_2_1:67891962-67895727:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 783.9896850585938 2 783.987458 1565.96036 NaN NaN NaN NaN NaN NaN NaN 104.92 1 98.74 98.24 99.24 -6.1757 0 0 0 0.94307 1 70229 70229 0.30703 0 1 28464 12351 19036 19406 33471 33471 0.2000213013886878 KRRRWWFRSPM 11 Unmodified _KRRRWWFRSPM_ 0 0 0 ENST00000229634.13_1_6:126136448-126199430:+|nuORF ENST00000229634.13_1_6:126136448-126199430:+|nuORF ENST00000229634.13_1_6:126136448-126199430:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.437255859375 2 803.438421 1604.86229 1.5202 0.0012214 -1.076 -0.00086451 0.44419 0.00035688 803.437687436963 89.257 0.40807 83.081 82.865 83.273 -6.1757 49 22 3 0 0 0 0.74157 1 58962 58962 0.35063 0.043601 1 22412000 28465 11064 19037 19407 33472 33472 0.08405185498645551 KRRTVIKVR 9 Unmodified _KRRTVIKVR_ 0 0 0 REV__nc|ENSG00000102081|Q06787-11|FMR1 REV__nc|ENSG00000102081|Q06787-11|FMR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3953857421875 2 578.393474 1154.77239 1.5961 0.00092317 1.1998 0.00069393 2.7958 0.0016171 578.3938240392588 104.84 0.21429 98.669 98.559 98.773 -6.1757 37 22 2 0 0 0 0.59218 1 70130 70130 1.8442 1.4936 1 8199900 + 28466 29540 19038 19408 33473 33473 0.2011987916173439 KRRWLKILTRK 11 Unmodified _KRRWLKILTRK_ 0 0 0 REV__ENSG00000170683|ENST00000642047|OR10A3 REV__ENSG00000170683|ENST00000642047|OR10A3 MSMS AL20221201_MKP_PDAC_01 4 500.002197265625 3 499.999933 1496.97797 NaN NaN NaN NaN NaN NaN NaN 40.691 1 36.162 35.662 36.662 -4.5294 0 0 0 0.94338 1 24333 24333 0.08335 0.08335 1 + 28467 22503 19039 19409 33474 33474 0.24936032621144477 KRRWLKILTRK 11 Unmodified _KRRWLKILTRK_ 0 0 0 REV__ENSG00000170683|ENST00000642047|OR10A3 REV__ENSG00000170683|ENST00000642047|OR10A3 MSMS AL20221201_MKP_PDAC_01 4 500.2673645019531 3 499.999933 1496.97797 NaN NaN NaN NaN NaN NaN NaN 42.495 1 37.811 37.311 38.311 -4.6846 0 0 0 0.9435 1 25680 25680 0 0 1 + 28468 22503 19039 19409 33475 33475 0.24936032621144477 KRRWRRRRFTD 11 Unmodified _KRRWRRRRFTD_ 0 0 0 REV__nc|ENSG00000138119|Q9NZM1-5|MYOF REV__nc|ENSG00000138119|Q9NZM1-5|MYOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.973876953125 2 816.974548 1631.93454 NaN NaN NaN NaN NaN NaN NaN 84.834 1 84.897 84.397 85.397 0.063171 0 0 0 0.9435 1 46952 46952 0 0 1 + 28469 20306 19040 19410 33476 33476 0.14385235896543236 KRSAPSLGWL 10 Unmodified _KRSAPSLGWL_ 0 0 0 REV__nc|ENSG00000168066|Q15637-6|SF1 REV__nc|ENSG00000168066|Q15637-6|SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2170715332031 3 372.217102 1113.62948 0.41155 0.00015318 0.016301 6.0675E-06 0.42785 0.00015925 372.2169986343955 40.617 0.31549 40.622 40.402 40.717 0.0050583 35 14 3 0 0 0 0.57893 1 21679 21679 7.4771 0.37534 1 10625000 + 28470 29768 19041 19411 33477 33477 0.0772082697985752 KRSAPSLGWL 10 Unmodified _KRSAPSLGWL_ 0 0 0 REV__nc|ENSG00000168066|Q15637-6|SF1 REV__nc|ENSG00000168066|Q15637-6|SF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.217102 1113.62948 0.41155 0.00015318 0.016301 6.0675E-06 0.42785 0.00015925 372.2169986343955 40.617 0.31549 40.622 40.402 40.717 0.0050583 0 0 NaN 7.4771 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 10625000 + 28471 29768 19041 19411 0.0772082697985752 KRSSSEIKTDY 11 Unmodified _KRSSSEIKTDY_ 0 0 0 ENSG00000102755|ENST00000282397|FLT1;nc|ENSG00000102755|P17948-5|FLT1 ENSG00000102755|ENST00000282397|FLT1 ENSG00000102755|ENST00000282397|FLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3372192382812 2 657.338424 1312.66229 0.81226 0.00053393 -1.5639 -0.001028 -0.75167 -0.0004941 657.3371353658462 102.36 0.10374 96.183 96.114 96.218 -6.1757 17 7 3 0 0 0 0.47711 1 68682 68682 27.223 11.975 1 7745300 28472 2061 19042 19412 33478 33478 0.01846944521412297 KRTFEEIK 8 Unmodified _KRTFEEIK_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MSMS AL20221201_MKP_PDAC_01 4 351.1469116210938 3 350.869591 1049.58694 NaN NaN NaN NaN NaN NaN NaN 17.69 1 15.103 14.603 15.603 -2.5866 0 0 0 0.97444 1 9273 9273 3.5965 2.4032 1 28473 2194 19043 19413 33479 33479 0.06413431851615314 KRTLPRRKT 9 Unmodified _KRTLPRRKT_ 0 0 0 ENST00000557196.1_1_14:45356671-45356932:-|nuORF ENST00000557196.1_1_14:45356671-45356932:-|nuORF ENST00000557196.1_1_14:45356671-45356932:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 578.3763427734375 2 578.375281 1154.73601 NaN NaN NaN NaN NaN NaN NaN 104.57 1 98.396 97.896 98.896 -6.1757 0 0 0 0.85852 1 70023 70023 0.45834 0 1 28474 15252 19044 19414 33480 33480 0.1648300226502215 KRTRRRRH 8 Unmodified _KRTRRRRH_ 0 0 0 ENST00000398204.8_1_7:87563626-87563767:+|nuORF ENST00000398204.8_1_7:87563626-87563767:+|nuORF ENST00000398204.8_1_7:87563626-87563767:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 583.3698120117188 2 583.366113 1164.71767 NaN NaN NaN NaN NaN NaN NaN 106.1 1 99.924 99.424 100.42 -6.1757 0 0 0 0.97444 1 71041 71041 0.79363 0 1 28475 12846 19045 19415 33481 33481 0.14190305133683978 KRVKVLIHL 9 Unmodified _KRVKVLIHL_ 0 0 0 REV__ENST00000409985.5_3_2:190670438-190670489:+|nuORF REV__ENST00000409985.5_3_2:190670438-190670489:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.382080078125 2 553.382043 1104.74953 NaN NaN NaN NaN NaN NaN NaN 79.776 1 79.776 79.276 80.276 0 0 0 0 0.8622 1 44306 44306 0 0 1 + 28476 26703 19046 19416 33482 33482 0.20134860044277048 KRVLPLSKG 9 Unmodified _KRVLPLSKG_ 0 0 0 REV__ENSG00000143753|ENST00000323699|DEGS1 REV__ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3291320800781 2 499.329476 996.6444 -0.54919 -0.00027423 0.019521 9.7473E-06 -0.52967 -0.00026448 499.3294837459147 103.58 0.24036 103.53 103.4 103.64 -0.047928 15 9 2 0 0 0 0.6149 1 57506 57506 0.45834 0.057624 1 3496900 + 28477 20665 19047 19417 33483 33483 0.14594318847866816 KRWFIFGG 8 Unmodified _KRWFIFGG_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7823181152344 2 505.782162 1009.54977 NaN NaN NaN NaN NaN NaN NaN 94.714 1 94.293 93.793 94.793 -0.42044 0 0 0 0.97444 1 51742 51742 0 0 1 + 28478 29698 19048 19418 33484 33484 0.04537805096526881 KRWIRMNI 8 Unmodified _KRWIRMNI_ 0 0 0 REV__ENST00000297540.4_1_5:125960605-125960665:+|nuORF REV__ENST00000297540.4_1_5:125960605-125960665:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8878173828125 3 372.886811 1115.6386 1.6235 0.0006054 2.2156 0.00082615 3.8391 0.0014316 372.88749709062773 81.208 0.56458 75.032 74.863 75.427 -6.1757 45 32 2 0 0 0 0.80232 1 53269 53269 3.5965 3.5965 1 13660000 + 28479 25281 19049 19419 33485 33485 0.08540897064517594 KRWMCNIPR 9 Unmodified _KRWMCNIPR_ 0 0 0 nc|ENSG00000111885|P33908-2|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 nc|ENSG00000111885|P33908-2|MAN1A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.9916381835938 2 602.31552 1202.61649 NaN NaN NaN NaN NaN NaN NaN 94.737 1 94.737 94.237 95.237 0 0 0 0 0.85852 1 52367 52367 0.45834 0 1 28480 16119 19050 19420 33486 33486 0.023283493244434794 KRWQQQWQQQW 11 Unmodified _KRWQQQWQQQW_ 0 0 0 REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2747192382812 3 543.939291 1628.79604 0.2111 0.00011483 0.52144 0.00028363 0.73255 0.00039846 544.2732982323876 89.221 0.11224 89.221 89.146 89.259 0 6 4 2 0 0 0 0.7453 1 49369 49369 0 0 1 342830 + 28481 24896 19051 19421 33487 33487 0.006796481376113661 KRWTFQFKRFR 11 Unmodified _KRWTFQFKRFR_ 0 0 0 ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4520874023438 2 800.454594 1598.89463 NaN NaN NaN NaN NaN NaN NaN 52.42 1 52.361 51.861 52.861 -0.058918 0 0 0 0.94313 1 28397 28397 0.26902 0 1 28482 13422 19052 19422 33488 33488 0.11914296173267758 KRYEWNLAW 9 Unmodified _KRYEWNLAW_ 0 0 0 REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.3272094726562 2 633.324922 1264.63529 NaN NaN NaN NaN NaN NaN NaN 73.627 1 73.151 72.651 73.651 -0.47588 0 0 0 0.85737 1 40292 40292 0.6015 0.076735 1 + 28483 20362 19053 19423 33489 33489 0.01355925491520793 KRYVHQNFSS 10 Unmodified _KRYVHQNFSS_ 0 0 0 ENSG00000123892|ENST00000243662|RAB38 ENSG00000123892|ENST00000243662|RAB38 ENSG00000123892|ENST00000243662|RAB38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5516662597656 3 422.551033 1264.63127 NaN NaN NaN NaN NaN NaN NaN 22.619 1 22.636 22.136 23.136 0.01749 0 0 0 0.97302 1 11621 11621 1.7423 0 1 28484 3733 19054 19424 33490 33490 0.009538359978023436 KRYWWQLYRLG 11 Unmodified _KRYWWQLYRLG_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.4286499023438 2 784.927877 1567.8412 -0.043309 -3.3995E-05 -0.2297 -0.00018029 -0.27301 -0.00021429 784.9273531796304 85.379 0.56528 85.44 85.187 85.752 0.061638 36 21 3 0 0 0 0.68427 1 47261 47261 5.7319 2.7366 1 27793000 + 28485 17475 19055 19425 33491 33491 0.07999498670778848 KRYYYYCRFRW 11 Unmodified _KRYYYYCRFRW_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4154663085938 2 852.41682 1702.81909 NaN NaN NaN NaN NaN NaN NaN 84.289 1 84.289 83.789 84.789 0 0 0 0 0.9435 1 46731 46731 0 0 1 + 28486 18438 19056 19426 33492 33492 -0.004210490693367319 KRYYYYCRFRW 11 Unmodified _KRYYYYCRFRW_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 852.4173583984375 2 852.41682 1702.81909 NaN NaN NaN NaN NaN NaN NaN 107.66 1 107.61 107.11 108.11 -0.047607 0 0 0 0.9435 1 59642 59642 0 0 1 + 28487 18438 19056 19426 33493 33493 -0.004210490693367319 KRYYYYCRFRW 11 Unmodified _KRYYYYCRFRW_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20221201_MKP_PDAC_01 4 852.4171142578125 2 852.41682 1702.81909 NaN NaN NaN NaN NaN NaN NaN 84.182 1 78.006 77.506 78.506 -6.1757 0 0 0 0.9435 1 55373 55373 0 0 1 + 28488 18438 19056 19426 33494 33494 -0.004210490693367319 KSADVSYLNLF 11 Unmodified _KSADVSYLNLF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.8300170898438 2 628.829703 1255.64485 0.19194 0.0001207 -0.056383 -3.5455E-05 0.13555 8.5241E-05 628.8298020650077 76.638 0.27081 76.638 76.514 76.785 0 19 10 3 0 0 0 0.66428 1 42622 42622 7.609 0.88579 1 395940 + 28489 21279 19057 19427 33495 33495 0.027256489863475508 KSADVSYLNLF 11 Unmodified _KSADVSYLNLF_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 628.829703 1255.64485 0.19194 0.0001207 -0.056383 -3.5455E-05 0.13555 8.5241E-05 628.8298020650077 76.638 0.27081 76.638 76.514 76.785 0 0 0 NaN 7.609 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 395940 + 28490 21279 19057 19427 0.027256489863475508 KSCIYLVDMP 10 Unmodified _KSCIYLVDMP_ 0 0 0 REV__ENST00000296490.7_1_3:52291178-52291430:-|nuORF REV__ENST00000296490.7_1_3:52291178-52291430:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1955871582031 3 390.196211 1167.5668 NaN NaN NaN NaN NaN NaN NaN 16.946 1 16.946 16.446 17.446 0 0 0 0 0.99248 1 8311 8311 0.62683 0 1 + 28491 25271 19058 19428 33496 33496 -0.01027823194863231 KSDDPLHAEIW 11 Unmodified _KSDDPLHAEIW_ 0 0 0 REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.822265625 2 655.822409 1309.63027 0.35034 0.00022976 0.50017 0.00032802 0.8505 0.00055778 655.8226865770783 60.559 0.26266 60.559 60.407 60.67 0 25 11 3 0 0 0 0.69316 1 33741 33741 4.897 0 1 1441400 + 28492 20337 19059 19429 33497 33497 -0.012164231617589394 KSDKMGALHQI 11 Unmodified _KSDKMGALHQI_ 0 0 0 REV__nc|ENSG00000140374|P13804-2|ETFA REV__nc|ENSG00000140374|P13804-2|ETFA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3268432617188 2 614.329347 1226.64414 0.40333 0.00024778 -3.5942 -0.002208 -3.1909 -0.0019603 614.3264918949329 58.851 0.34234 58.36 58.193 58.535 -0.49079 42 16 4 0 0 0 0.29175 1 32048 32048 27.223 7.9662 1 11143000 + 28493 20465 19060 19430 33498 33498 0.039885310656927686 KSDKMGALHQI 11 Unmodified _KSDKMGALHQI_ 0 0 0 REV__nc|ENSG00000140374|P13804-2|ETFA REV__nc|ENSG00000140374|P13804-2|ETFA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 614.329347 1226.64414 0.40333 0.00024778 -3.5942 -0.002208 -3.1909 -0.0019603 614.3264918949329 58.851 0.34234 58.36 58.193 58.535 -0.49079 -0.026726 -0.00088621 NaN 27.223 42 16 4 NaN NaN NaN NaN 0 NaN NaN 0 11143000 + 28494 20465 19060 19430 0.039885310656927686 KSDQMEPSPL 10 Unmodified _KSDQMEPSPL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2738647460938 2 566.271164 1130.52777 0.50048 0.00028341 0.78434 0.00044415 1.2848 0.00072755 566.2712877432734 38.34 0.31505 38.34 38.22 38.535 0 48 26 2 0 0 0 0.033218 2 20444 20444;20558 66.457 24.501 1 16848000 28495 5230 19061 19431 33499;33500 33499 -0.032268322248683035 KSDQMEPSPL 10 Unmodified _KSDQMEPSPL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2724609375 2 566.271164 1130.52777 NaN NaN NaN NaN NaN NaN NaN 38.611 1 38.324 37.824 38.824 -0.28687 0 0 0 0.28083 1 20332 20332 38.176 17.722 1 28496 5230 19061 19431 33501 33501 -0.032268322248683035 KSEALKFHL 9 Unmodified _KSEALKFHL_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.21044921875 3 358.209836 1071.60768 NaN NaN NaN NaN NaN NaN NaN 40.265 1 40.265 39.765 40.765 0 0 0 0 0.82739 1 21630 21630 2.4985 0 1 28497 8833 19062 19432 33502 33502 0.07474022231281197 KSFDLISHNR 10 Unmodified _KSFDLISHNR_ 0 0 0 nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1 nc|ENSG00000153317|Q9ULH1-2|ASAP1 nc|ENSG00000153317|Q9ULH1-2|ASAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.1971740722656 3 406.219283 1215.63602 0.13119 5.3291E-05 -1.0969 -0.00044559 -0.96572 -0.00039229 406.21887116237946 25.946 0.39607 22.995 22.788 23.184 -2.9511 88 25 4 0 0 0 0.23082 1 14125 14125 11.631 3.1871 1 142200000 28498 6259 19063 19433 33503 33503 0.03682720140568563 KSFFHRQAP 9 Unmodified _KSFFHRQAP_ 0 0 0 REV__ENSG00000236980|ENST00000545770|C3orf84 REV__ENSG00000236980|ENST00000545770|C3orf84 MSMS AL20221201_MKP_PDAC_01 4 559.3008422851562 2 559.298707 1116.58286 NaN NaN NaN NaN NaN NaN NaN 17.498 1 14.911 14.411 15.411 -2.5866 0 0 0 0.83329 1 9154 9154 3.5965 1.2938 1 + 28499 24427 19064 19434 33504 33504 0.029233871485303098 KSFLEANL 8 Unmodified _KSFLEANL_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2559814453125 2 461.255643 920.496732 0.2754 0.00012703 1.2266 0.00056579 1.502 0.00069282 461.25618409174183 40.008 0.41378 35.478 35.291 35.705 -4.5294 57 36 2 0 0 0 0.19493 1 23921 23921 71.922 7.9618 1 26825000 28500 6096 19065 19435 33505 33505 0.033303825231769224 KSFNGKQA 8 Unmodified _KSFNGKQA_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2376708984375 2 440.237784 878.461016 NaN NaN NaN NaN NaN NaN NaN 14.606 1 14.606 14.106 15.106 0 0 0 0 0.97444 1 6957 6957 4.3292 0.73274 1 + 28501 22852 19066 19436 33506 33506 0.016923450661806783 KSFQQVDFWF 10 Unmodified _KSFQQVDFWF_ 0 0 0 nc|ENSG00000019485|Q9NQV5-2|PRDM11;nc|ENSG00000019485|Q9NQV5|PRDM11;ENSG00000019485|ENST00000683152|PRDM11 nc|ENSG00000019485|Q9NQV5-2|PRDM11 nc|ENSG00000019485|Q9NQV5-2|PRDM11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.3235473632812 2 666.324588 1330.63462 NaN NaN NaN NaN NaN NaN NaN 91.374 1 91.374 90.874 91.874 0 0 0 0 1.0019 1 50534 50534 0.45834 0 1 28502 516 19067 19437 33507 33507 -0.017469139482045648 KSFRLKAQL 9 Unmodified _KSFRLKAQL_ 0 0 0 nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 nc|ENSG00000197362|Q8N393-2|ZNF786 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2300720214844 3 364.229231 1089.66586 1.1165 0.00040667 1.1471 0.00041779 2.2636 0.00082446 364.2296478573947 40.371 0.37744 35.842 35.672 36.05 -4.5294 40 24 2 0 0 0 0.50598 1 24024 24024 7.1017 0.37856 1 15073000 28503 9944 19068 19438 33508 33508 0.12461703876556385 KSFRMSAN 8 Unmodified _KSFRMSAN_ 0 0 0 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 ENSG00000128536|ENST00000317716|CDHR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7387084960938 2 470.737094 939.459635 0.41979 0.00019761 -0.090238 -4.2478E-05 0.32955 0.00015513 470.7370334591968 17.659 0.27761 15.073 14.971 15.249 -2.5866 100 38 3 0 0 0 0.50673 1 9338 9338 34.102 1.797 1 29027000 28504 4068 19069 19439 33509 33509 -0.012516122942315633 KSFVTYGAAL 10 Unmodified _KSFVTYGAAL_ 0 0 0 REV__ENSG00000173157|ENST00000389420|ADAMTS20 REV__ENSG00000173157|ENST00000389420|ADAMTS20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8625793457031 3 352.862325 1055.56515 1.1089 0.0003913 -0.99186 -0.00034999 0.11709 4.1315E-05 352.86213649259025 27.893 0.22254 24.745 24.656 24.878 -3.1482 19 11 2 0 0 0 0.48505 1 15504 15504 10.899 0.099449 1 9040700 + 28505 22707 19070 19440 33510 33510 0.03958627103043 KSGAEREPCWD 11 Unmodified _KSGAEREPCWD_ 0 0 0 ENST00000591360.1_1_18:56203804-56204053:+|nuORF ENST00000591360.1_1_18:56203804-56204053:+|nuORF ENST00000591360.1_1_18:56203804-56204053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.1905517578125 3 426.524155 1276.55064 -0.36185 -0.00015434 -0.19949 -8.5089E-05 -0.56135 -0.00023943 426.5244571461631 21.352 0.13717 21.352 21.297 21.434 0 40 18 3 0 0 0 0.7326 1 10829 10829 0.40827 0 1 1713400 28506 15701 19071 19441 33511 33511 -0.07657813107402944 KSGFTFALEEI 11 Unmodified _KSGFTFALEEI_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.3256225585938 2 621.324254 1240.63395 0.79595 0.00049454 -0.47464 -0.0002949 0.32131 0.00019964 621.3239994681647 52.233 0.22055 52.174 52.047 52.267 -0.058918 20 10 3 0 0 0 0.58219 1 28282 28282 12.241 1.4411 1 2162300 + 28507 21984 19072 19442 33512 33512 0.023262466120968384 KSHLISHQM 9 Unmodified _KSHLISHQM_ 0 0 0 ENSG00000198040|ENST00000539354|ZNF84 ENSG00000198040|ENST00000539354|ZNF84 ENSG00000198040|ENST00000539354|ZNF84 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.288818359375 2 540.784576 1079.5546 0.4882 0.00026401 3.2014 0.0017313 3.6896 0.0019953 540.7864957134103 72.776 0.22148 72.3 72.251 72.473 -0.47588 13 9 2 0 0 0 0.19758 1 39859 39859 13.042 1.4022 1 832000 28508 10040 19073 19443 33513 33513 0.01800321176961006 KSHLRHRRA 9 Unmodified _KSHLRHRRA_ 0 0 0 REV__ENSG00000242732|ENST00000609883|RTL5 REV__ENSG00000242732|ENST00000609883|RTL5 MSMS AL20221201_MKP_PDAC_01 4 387.5658264160156 3 387.56724 1159.67989 NaN NaN NaN NaN NaN NaN NaN 14.471 1 11.969 11.469 12.469 -2.5029 0 0 0 0.85359 1 7352 7352 1.0715 0.10919 1 + 28509 24466 19074 19444 33514 33514 0.10643794148222696 KSHNQKSKT 9 Unmodified _KSHNQKSKT_ 0 0 0 REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF REV__ENST00000602506.5_1_16:67760333-67793575:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1950988769531 3 353.196478 1056.56761 NaN NaN NaN NaN NaN NaN NaN 93.632 1 93.632 93.132 94.132 0 0 0 0 0.85447 1 51763 51763 0.96228 0.50394 1 + 28510 20517 19075 19445 33515 33515 0.041584755607118495 KSHPFCNCD 9 Unmodified _KSHPFCNCD_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.915283203125 3 350.809238 1049.40589 NaN NaN NaN NaN NaN NaN NaN 20.534 1 20.544 20.044 21.044 0.010553 0 0 0 0.85852 1 10475 10475 0.20686 0 1 + 28511 22747 19076 19446 33516 33516 -0.11684152788257052 KSHREEYII 9 Unmodified _KSHREEYII_ 0 0 0 REV__ENSG00000187950|ENST00000537054|OVCH1 REV__ENSG00000187950|ENST00000537054|OVCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5489501953125 3 392.212017 1173.61422 0.90709 0.00035577 1.9065 0.00074775 2.8136 0.0011035 392.54725650017053 40.549 0.5405 36.02 35.718 36.258 -4.5294 57 33 3 0 0 0 0.45045 1 24047 24047 6.6304 0 1 26077000 + 28512 23675 19077 19447 33517 33517 0.034359153920149765 KSIRCSNWSKF 11 Unmodified _KSIRCSNWSKF_ 0 0 0 ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.1990661621094 3 452.567806 1354.68159 0.27477 0.00012435 -2.9822 -0.0013496 -2.7074 -0.0012253 452.56641144982524 35.767 0.14106 35.767 35.655 35.796 0 12 6 2 0 0 0 0.29891 1 18942 18942 6.2344 0 1 2130800 28513 7334 19078 19448 33518 33518 0.018436223312619404 KSISFRRQSKF 11 Unmodified _KSISFRRQSKF_ 0 0 0 ENST00000289166.5_1_1:27332096-27332258:-|nuORF ENST00000289166.5_1_1:27332096-27332258:-|nuORF ENST00000289166.5_1_1:27332096-27332258:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 692.3993530273438 2 692.39641 1382.77827 NaN NaN NaN NaN NaN NaN NaN 65.69 1 59.514 59.014 60.014 -6.1757 0 0 0 0.75116 1 42659 42659 14.405 5.66 1 28514 11456 19079 19449 33519 33519 0.10218932882730769 KSIVKKTPQ 9 Unmodified _KSIVKKTPQ_ 0 0 0 nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8 nc|ENSG00000131351|Q9BT25-2|HAUS8 nc|ENSG00000131351|Q9BT25-2|HAUS8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.2657470703125 2 514.826766 1027.63898 1.0354 0.00053304 -1.9119 -0.00098429 -0.87652 -0.00045125 514.8264937672492 42.671 0.2928 37.987 37.832 38.125 -4.6846 27 18 2 0 0 0 0.19758 1 25855 25855 13.042 8.2865 1 13261000 28515 4316 19080 19450 33520 33520 0.12626595265373908 KSIYAALYFF 10 Unmodified _KSIYAALYFF_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2218017578125 3 408.221742 1221.6434 -0.061649 -2.5166E-05 0.49006 0.00020006 0.42842 0.00017489 408.22193169888635 55.147 0.35936 55.078 54.939 55.298 -0.068737 49 17 4 0 0 0 0.63399 1 30039 30039 5.4027 0.87384 1 20277000 28516 718 19081 19451 33521 33521 0.04144059688269408 KSKKAILQIG 10 Unmodified _KSKKAILQIG_ 0 0 0 REV__ENSG00000101412|ENST00000343380|E2F1 REV__ENSG00000101412|ENST00000343380|E2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3555908203125 2 543.355691 1084.69683 -0.59993 -0.00032598 0.56103 0.00030484 -0.038904 -2.1139E-05 543.3561163558204 103.6 0.16937 103.55 103.45 103.62 -0.047928 13 6 3 0 0 0 0.72247 1 57547 57547 0.40072 0 1 3444000 + 28517 18170 19082 19452 33522 33522 0.1578685719080113 KSKKLLNI 8 Unmodified _KSKKLLNI_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2475280761719 2 472.318577 942.622602 NaN NaN NaN NaN NaN NaN NaN 48.585 1 48.213 47.713 48.713 -0.37172 0 0 0 0.96305 1 26080 26080 7.9102 2.6795 1 28518 1161 19083 19453 33523 33523 0.1489951409926107 KSKKLTAVR 9 Unmodified _KSKKLTAVR_ 0 0 0 REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8399658203125 2 515.840208 1029.66586 0.25657 0.00013235 -0.72124 -0.00037204 -0.46467 -0.00023969 515.839926261177 102.72 0.27818 102.61 102.51 102.79 -0.10458 19 12 2 0 0 0 0.62242 1 56066 56066 0 0 1 253360 + 28519 28301 19084 19454 33524 33524 0.15221703876522952 KSKKLTAVR 9 Unmodified _KSKKLTAVR_ 0 0 0 REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF REV__ENST00000522306.1_1_8:31077684-31078419:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 515.840208 1029.66586 0.25657 0.00013235 -0.72124 -0.00037204 -0.46467 -0.00023969 515.839926261177 102.72 0.27818 102.61 102.51 102.79 -0.10458 -0.041311 -0.00034843 NaN 0 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 253360 + 28520 28301 19084 19454 0.15221703876522952 KSKKTKKTKKA 11 Unmodified _KSKKTKKTKKA_ 0 0 0 REV__ENST00000566078.1_1_16:67644735-67645545:+|nuORF REV__ENST00000566078.1_1_16:67644735-67645545:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.42724609375 2 638.427179 1274.8398 NaN NaN NaN NaN NaN NaN NaN 15.621 1 15.627 15.127 16.127 0.0057774 0 0 0 0.9435 1 7793 7793 0 0 1 + 28521 18271 19085 19455 33525 33525 0.2133786458200575 KSKPLDNASKL 11 Unmodified _KSKPLDNASKL_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.9031677246094 3 400.903072 1199.68739 0.15564 6.2398E-05 -0.14533 -5.8261E-05 0.010319 4.1368E-06 400.90296957319947 45.901 0.28893 45.577 45.447 45.735 -0.32425 46 16 4 0 0 0 0.26767 1 24611 24611 28.181 3.0263 1 93554000 28522 3211 19086 19456 33526 33526 0.09553044114591103 KSKPLDNASKL 11 Unmodified _KSKPLDNASKL_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.9042358398438 3 400.903072 1199.68739 1.1396 0.00045688 0.38717 0.00015522 1.5268 0.0006121 400.9030448470429 50.949 0.45809 45.3 45.053 45.511 -5.649 92 27 4 0 0 0 0.33405 1 31891 31891 24.957 2.8482 1 406890000 28523 3211 19086 19456 33527 33527 0.09553044114591103 KSKQFSPSGY 10 Unmodified _KSKQFSPSGY_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.788818359375 2 564.787838 1127.56112 0.65296 0.00036878 0.59324 0.00033506 1.2462 0.00070384 564.7882982962182 45.917 0.25681 45.889 45.763 46.02 -0.028011 27 11 3 0 0 0 0.57893 1 24663 24663 12.241 12.241 1 7138900 28524 2170 19087 19457 33528 33528 0.002445376093419327 KSLGEDVIF 9 Unmodified _KSLGEDVIF_ 0 0 0 nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30 nc|ENSG00000134249|Q9UKF2-2|ADAM30 nc|ENSG00000134249|Q9UKF2-2|ADAM30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2975769042969 2 504.274032 1006.53351 -1.0942 -0.00055176 2.8991 0.001462 1.805 0.00091019 504.2742610401516 56.172 0.57095 55.687 55.352 55.923 -0.48554 38 28 2 0 0 0 0.15672 1 30391 30391 26.884 1.4843 1 6696400 28525 4576 19088 19458 33529 33529 0.030506343490742438 KSLNLLKIKH 10 Unmodified _KSLNLLKIKH_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000570300.1_1_17:79575918-79596804:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.390380859375 2 597.390065 1192.76558 1.08 0.00064521 -0.151 -9.0207E-05 0.92905 0.000555 597.3899434021429 106.07 1.4159 99.897 99.603 101.02 -6.1757 500 236 3 0 0 0 0.72247 1 71650 71650 0.40072 0.050084 1 14298000 28526 9054 19089 19459 33530 33530 0.17690521490499123 KSNLNEPYI 9 Unmodified _KSNLNEPYI_ 0 0 0 REV__nc|ENSG00000132872|Q9H2B2-2|SYT4 REV__nc|ENSG00000132872|Q9H2B2-2|SYT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7413940429688 2 539.282389 1076.55022 0.24607 0.0001327 -0.089968 -4.8518E-05 0.1561 8.4184E-05 539.2821179578968 77.69 0.18993 77.69 77.581 77.771 0 13 9 2 0 0 0 0.21367 1 43149 43149 4.756 1.1595 1 375390 + 28527 19887 19090 19460 33531 33531 0.01501135235048423 KSNRIYLFY 9 Unmodified _KSNRIYLFY_ 0 0 0 REV__nc|ENSG00000292357|P15509-8|CSF2RA REV__nc|ENSG00000292357|P15509-8|CSF2RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.331787109375 2 602.329673 1202.64479 0.60722 0.00036575 1.5272 0.00091985 2.1344 0.0012856 602.3312824328184 96.265 0.54018 90.089 89.73 90.27 -6.1757 88 32 5 0 0 0 0.40476 1 63763 63763 12.241 2.8575 1 59051000 + 28528 24005 19091 19461 33532 33532 0.051576937770278164 KSNSALHF 8 Unmodified _KSNSALHF_ 0 0 0 ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENST00000571243.1_1_17:7228777-7229792:-|nuORF ENSG00000215041|ENST00000399464|NEURL4 ENSG00000215041|ENST00000399464|NEURL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2384338378906 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 52.184 1 52.184 51.684 52.684 0 0 0 0 0.97444 1 28870 28870 2.8892 0 1 28529 10518 19092 19462 33533 33533 0.005883450661940515 KSPLTAPCGE 10 Unmodified _KSPLTAPCGE_ 0 0 0 REV__ENSG00000127663|ENST00000159111|KDM4B REV__ENSG00000127663|ENST00000159111|KDM4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2875366210938 2 501.749867 1001.48518 0.96353 0.00048345 0.3585 0.00017988 1.322 0.00066333 501.7503785731121 81.05 0.50465 81.11 80.892 81.397 0.059929 24 19 2 0 0 0 0.22316 1 44853 44853 20.415 3.3016 1 1372500 + 28530 19588 19093 19463 33534 33534 -0.015501825624596677 KSPLVADIEKQ 11 Unmodified _KSPLVADIEKQ_ 0 0 0 REV__CYP3A5|p.N341S|1|0.31|ENSG00000106258|chr7:99660503-99660503|T/C|missense_variant REV__CYP3A5|p.N341S|1|0.31|ENSG00000106258|chr7:99660503-99660503|T/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2375793457031 3 409.902961 1226.68705 0.83887 0.00034385 -1.1127 -0.00045609 -0.27381 -0.00011224 410.23677255528486 77.522 0.78117 71.347 70.973 71.754 -6.1757 103 45 3 0 0 0 0.66175 1 50576 50576 7.846 0.36898 1 37559000 + 28531 16902 19094 19464 33535 33535 0.08277624394736449 KSPNKQRDY 9 Unmodified _KSPNKQRDY_ 0 0 0 REV__HNF1B|p.M315Ifs*13|1|0.07|ENSG00000275410|chr17:37731695-37731696|-/AT|frameshift_variant REV__HNF1B|p.M315Ifs*13|1|0.07|ENSG00000275410|chr17:37731695-37731696|-/AT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8048706054688 2 568.296362 1134.57817 0.62435 0.00035482 2.2323 0.0012686 2.8566 0.0016234 568.800367065338 84.538 1.3627 78.362 77.403 78.766 -6.1757 157 76 3 0 0 0 0.30202 1 55128 55128 17.113 0.96379 1 46088000 + 28532 24652 19095 19465 33536 33536 0.016264582151279683 KSPNPLLTF 9 Unmodified _KSPNPLLTF_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000486886.1_1_3:111680917-111693407:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.3032531738281 2 508.792392 1015.57023 1.0138 0.00051583 0.42928 0.00021842 1.4431 0.00073424 508.79238880803507 89.576 0.21701 83.4 83.345 83.562 -6.1757 16 11 2 0 0 0 0.17331 1 59107 59107 22.736 7.898 1 11985000 28533 5648 19096 19466 33537 33537 0.06306930965649826 KSQDPCASRDD 11 Unmodified _KSQDPCASRDD_ 0 0 0 ENST00000585362.6_3_19:1104424-1105401:+|nuORF ENST00000585362.6_3_19:1104424-1105401:+|nuORF ENST00000585362.6_3_19:1104424-1105401:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8434753417969 3 407.843665 1220.50916 0.40528 0.00016529 -1.0645 -0.00043415 -0.65923 -0.00026886 407.8431212130601 99.822 0.16911 93.646 93.558 93.727 -6.1757 21 12 2 0 0 0 0.631 1 66590 66590 9.7643 1.3199 1 40557000 28534 15606 19097 19467 33538 33538 -0.09226993866741395 KSQRCGFV 8 Unmodified _KSQRCGFV_ 0 0 0 REV__nc|ENSG00000089250|P29475-3|NOS1 REV__nc|ENSG00000089250|P29475-3|NOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7395935058594 2 462.739637 923.464721 0.011466 5.3058E-06 -0.25222 -0.00011671 -0.24075 -0.00011141 462.7393662771174 25.969 0.44257 23.018 22.772 23.214 -2.9511 66 28 3 0 0 0 0.40035 1 14277 14277 44.407 17.523 1 47248000 + 28535 17838 19098 19468 33539 33539 -7.308431599994947E-05 KSQRCGFV 8 Unmodified _KSQRCGFV_ 0 0 0 REV__nc|ENSG00000089250|P29475-3|NOS1 REV__nc|ENSG00000089250|P29475-3|NOS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.4871520996094 2 462.739637 923.464721 0.011466 5.3058E-06 -0.25222 -0.00011671 -0.24075 -0.00011141 462.7393662771174 25.969 0.44257 23.018 22.772 23.214 -2.9511 66 28 3 0 0 0 8.7369 1 14159 14159 36.044 7.5574 1 47248000 + 28536 17838 19098 19468 33540 33540 -7.308431599994947E-05 KSRDRDRH 8 Unmodified _KSRDRDRH_ 0 0 0 nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 nc|ENSG00000171365|P51795-1|CLCN5 MSMS AL20221201_MKP_PDAC_01 4 535.283447265625 2 535.28412 1068.55369 NaN NaN NaN NaN NaN NaN NaN 39.991 1 35.462 34.962 35.962 -4.5294 0 0 0 0.56375 1 23818 23818 36.506 0.37917 1 28537 8093 19099 19469 33541 33541 0.022152428522758782 KSRKKKYKKSR 11 Unmodified _KSRKKKYKKSR_ 0 0 0 REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF REV__ENST00000477789.5_1_X:119059185-119070773:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.4831237792969 4 359.984764 1435.90995 1.6285 0.00058624 -0.8772 -0.00031578 0.75132 0.00027046 359.9843864359314 83.229 0.61883 77.053 76.91 77.528 -6.1757 45 32 2 0 0 0 0.30592 1 55036 55036 0.32927 0 1 22844000 + 28538 18199 19100 19470 33542 33542 0.20943162970456797 KSRRKVVLF 9 Unmodified _KSRRKVVLF_ 0 0 0 ENST00000479285.5_1_1:114438325-114438811:-|nuORF ENST00000479285.5_1_1:114438325-114438811:-|nuORF ENST00000479285.5_1_1:114438325-114438811:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.4900207519531 3 378.248625 1131.72405 NaN NaN NaN NaN NaN NaN NaN 94.209 1 93.788 93.288 94.288 -0.42044 0 0 0 0.86004 1 51473 51473 0.26902 0 1 28539 14035 19101 19471 33543 33543 0.1634538552182221 KSSLSHAMVI 10 Unmodified _KSSLSHAMVI_ 0 0 0 ENST00000474323.5_1_22:44371844-44392260:+|nuORF;ENSG00000100347|ENST00000350028|SAMM50 ENST00000474323.5_1_22:44371844-44392260:+|nuORF ENST00000474323.5_1_22:44371844-44392260:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7938232421875 2 536.794609 1071.57467 0.44078 0.00023661 -2.1868 -0.0011738 -1.746 -0.00093723 536.7932345631472 40.416 0.2766 40.118 39.963 40.24 -0.29716 22 12 2 0 0 0 0.16524 1 21350 21350 37.974 12.575 1 4679800 28540 1802 19102 19472 33544 33544 0.0417407211691625 KSSVYKPDPAF 11 Unmodified _KSSVYKPDPAF_ 0 0 0 REV__ENSG00000116285|ENST00000377482|ERRFI1 REV__ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.55078125 3 413.552039 1237.63429 NaN NaN NaN NaN NaN NaN NaN 28.202 1 28.155 27.655 28.655 -0.046408 0 0 0 0.94216 1 14552 14552 1.0136 0.23704 1 + 28541 19037 19103 19473 33545 33545 0.024976663319421277 KSTCSLKACF 10 Unmodified _KSTCSLKACF_ 0 0 0 nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000290687|P0CG31|ZNF286B MSMS AL20221201_MKP_PDAC_01 4 362.8753356933594 3 363.180672 1086.52019 NaN NaN NaN NaN NaN NaN NaN 92.986 1 86.81 86.31 87.31 -6.1757 0 0 0 0.97302 1 61515 61515 1.7423 0 1 28542 16637 19104 19474 33546 33546 -0.019612630261690356 KSTEEQELEK 10 Unmodified _KSTEEQELEK_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5376892089844 3 407.538347 1219.59321 0.090702 3.6965E-05 -1.6197 -0.00066011 -1.529 -0.00062314 407.53774089146043 59.312 0.28516 59.259 59.134 59.42 -0.053059 27 14 2 0 0 0 0.68209 1 32409 32409 4.7159 0.52642 1 12760000 28543 1485 19105 19475 33547 33547 -0.0078013949821524875 KSTSASRT 8 Unmodified _KSTSASRT_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2245483398438 2 419.224874 836.435195 0.33486 0.00014038 -2.1013 -0.00088091 -1.7664 -0.00074053 419.2240298197903 25.98 0.24953 23.029 22.88 23.13 -2.9511 29 16 2 0 0 0 0.75262 1 14246 14246 12.532 0.89125 1 12400000 + 28544 21352 19106 19476 33548 33548 0.01043450823897274 KSVCGRDA 8 Unmodified _KSVCGRDA_ 0 0 0 nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2069091796875 2 418.20817 834.401786 NaN NaN NaN NaN NaN NaN NaN 16.08 1 16.066 15.566 16.566 -0.014067 0 0 0 0.97444 1 7920 7920 3.5965 0 1 28545 9055 19107 19477 33549 33549 -0.022038742196627936 KSVEMHHEAL 10 Unmodified _KSVEMHHEAL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENST00000395772.3_1_X:97645409-97645481:+|nuORF;ENST00000447052.1_1_21:24762753-24763314:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1180.582885742188 1 1180.57792 1179.57064 0.26289 0.00031037 3.1187 0.0036818 3.3816 0.0039922 1180.584515048658 87.361 0.15254 87.42 87.344 87.497 0.05822 10 7 2 0 0 0 0.57893 1 48583 48583 12.241 0 1 47093000 28546 1933;6461 19108 19478 33550 33550 -0.011960173767874949 KSVFVVHKR 9 Unmodified _KSVFVVHKR_ 0 0 0 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 ENSG00000198046|ENST00000504904|ZNF667 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2691955566406 3 367.229342 1098.6662 NaN NaN NaN NaN NaN NaN NaN 3.9712 1 3.8984 3.3984 4.3984 -0.07287 0 0 0 0.86031 1 1961 1961 0.23584 0 1 28547 10042 19109 19479 33551 33551 0.12081123596408361 KSWEPAEKK 9 Unmodified _KSWEPAEKK_ 0 0 0 REV__ENST00000489922.5_1_13:73544805-73590054:+|nuORF REV__ENST00000489922.5_1_13:73544805-73590054:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8660888671875 3 368.201229 1101.58186 NaN NaN NaN NaN NaN NaN NaN 15.65 1 15.65 15.15 16.15 0 0 0 0 0.85852 1 7557 7557 0.20686 0 1 + 28548 17720 19110 19480 33552 33552 0.035131279889810685 KSWKMCCCY 9 Unmodified _KSWKMCCCY_ 0 0 0 ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.4874267578125 3 384.488343 1150.4432 NaN NaN NaN NaN NaN NaN NaN 42.637 1 42.628 42.128 43.128 -0.0088196 0 0 0 0.85447 1 22834 22834 0.96228 0.50394 1 28549 12235 19111 19481 33553 33553 -0.1260052083850951 KSWKMCCCY 9 Unmodified _KSWKMCCCY_ 0 0 0 ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF ENST00000367463.4_1_6:149342503-149394992:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.4873352050781 3 384.488343 1150.4432 NaN NaN NaN NaN NaN NaN NaN 42.811 1 42.802 42.302 43.302 -0.0088196 0 0 0 0.85447 1 22932 22932 0.96228 0.72643 1 28550 12235 19111 19481 33554 33554 -0.1260052083850951 KSYGNEKRF 9 Unmodified _KSYGNEKRF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000511451.5_1_4:26364233-26422385:+|nuORF;nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000124232|Q9UBG7-2|RBPJL ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2992553710938 2 564.793455 1127.57236 1.5654 0.00088413 2.0267 0.0011446 3.5921 0.0020288 564.7948923257062 33.775 0.41436 29.79 29.608 30.022 -3.9853 60 22 4 0 0 0 0.16524 1 19418 19418 15.248 0 1 9397900 28551 7729;3770 19112 19482 33555 33555 0.013673597034767226 KSYQSFQTF 9 Unmodified _KSYQSFQTF_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.277099609375 2 568.274564 1134.53457 1.4406 0.00081868 0.84564 0.00048055 2.2863 0.0012992 568.2754300559823 88.112 0.8221 81.937 81.551 82.373 -6.1757 142 45 4 0 0 0 0.23158 1 58082 58082 20.454 0 1 115340000 28552 1209 19113 19483 33556 33556 -0.0273115128200061 KSYRCDECGK 10 Unmodified _KSYRCDECGK_ 0 0 0 ENSG00000178917|ENST00000436261|ZNF852;ENSG00000196345|ENST00000426540|ZKSCAN7;nc|ENSG00000178917|Q6ZMS4|ZNF852 ENSG00000178917|ENST00000436261|ZNF852;nc|ENSG00000178917|Q6ZMS4|ZNF852 nc|ENSG00000178917|Q6ZMS4|ZNF852 MSMS AL20221201_MKP_PDAC_01 4 396.8439636230469 3 396.842719 1187.50633 NaN NaN NaN NaN NaN NaN NaN 1.1014 1 -1.3805 -1.8805 -0.88054 -2.482 0 0 0 1.0029 1 575 575 0.12286 0 1 28553 8781;16415 19114 19484 33557 33557 -0.07992540525265213 KTAFGPGRP 9 Unmodified _KTAFGPGRP_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.26318359375 2 465.761426 929.5083 0.23945 0.00011153 1.6935 0.00078878 1.933 0.00090031 465.762136578266 75.238 0.30541 75.284 75.147 75.452 0.045959 29 14 3 0 0 0 0.32871 1 41471 41471 15.847 5.0233 1 3780100 + 28554 22087 19115 19485 33558 33558 0.040726243371977944 KTAFGPGRP 9 Unmodified _KTAFGPGRP_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 465.761426 929.5083 0.63836 0.00029733 0.62184 0.00028963 1.2602 0.00058695 465.7618150517607 75.528 0.11497 75.051 75.011 75.126 -0.47714 -0.11652 -0.00069586 NaN 15.847 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 537530 + 28555 22087 19115 19485 0.040726243371977944 KTAFGPGRP 9 Unmodified _KTAFGPGRP_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 465.761426 929.5083 0.23945 0.00011153 1.6935 0.00078878 1.933 0.00090031 465.762136578266 75.238 0.30541 75.284 75.147 75.452 0.045959 0.11652 0.00030245 NaN 15.847 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3780100 + 28556 22087 19115 19485 0.040726243371977944 KTAKLPIWR 9 Unmodified _KTAKLPIWR_ 0 0 0 REV__ENST00000374017.3_1_6:34725332-34725551:+|nuORF REV__ENST00000374017.3_1_6:34725332-34725551:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 556.8497314453125 2 556.850576 1111.6866 NaN NaN NaN NaN NaN NaN NaN 106.09 1 99.916 99.416 100.42 -6.1757 0 0 0 0.84737 1 71036 71036 1.8442 0.36234 1 + 28557 26168 19116 19486 33559 33559 0.1352229425619953 KTCYGQLY 8 Unmodified _KTCYGQLY_ 0 0 0 REV__ENSG00000188177|ENST00000409871|ZC3H6 REV__ENSG00000188177|ENST00000409871|ZC3H6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2327880859375 2 488.233853 974.453153 NaN NaN NaN NaN NaN NaN NaN 29.82 1 29.82 29.32 30.32 0 0 0 0 0.95607 1 15468 15468 9.3474 0.75416 1 + 28558 23696 19117 19487 33560 33560 -0.03509550245587434 KTEEENSD 8 Unmodified _KTEEENSD_ 0 0 0 ENST00000564247.1_1_16:66643286-66646537:+|nuORF;ENST00000566756.5_1_16:66643374-66646537:+|nuORF;ENSG00000140931|ENST00000567572|CMTM3 ENST00000564247.1_1_16:66643286-66646537:+|nuORF ENST00000564247.1_1_16:66643286-66646537:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.1983337402344 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 7.4317 1 7.3401 6.8401 7.8401 -0.09156 0 0 0 0.97444 1 3655 3655 0.79363 0 1 28559 5281 19118 19488 33561 33561 -0.09429177100366815 KTFFEKSLI 9 Unmodified _KTFFEKSLI_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5507507324219 3 371.549859 1111.62775 0.32583 0.00012106 -0.048838 -1.8146E-05 0.27699 0.00010291 371.5499332162567 48.324 0.1968 48.285 48.203 48.4 -0.038643 24 9 3 0 0 0 0.36964 1 26060 26060 9.544 0.56773 1 7159500 28560 16586 19119 19489 33562 33562 0.07639773171240449 KTFMYLLWN 9 Unmodified _KTFMYLLWN_ 0 0 0 ENST00000503752.5_1_4:185578328-185580527:+|nuORF ENST00000503752.5_1_4:185578328-185580527:+|nuORF ENST00000503752.5_1_4:185578328-185580527:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.879638671875 3 405.87921 1214.6158 NaN NaN NaN NaN NaN NaN NaN 20.772 1 20.782 20.282 21.282 0.010553 0 0 0 0.85852 1 10604 10604 0.20686 0 1 28561 14475 19120 19490 33563 33563 0.017078331563880056 KTFSSMDI 8 Unmodified _KTFSSMDI_ 0 0 0 REV__ENSG00000090857|ENST00000288050|PDPR REV__ENSG00000090857|ENST00000288050|PDPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7267761230469 2 464.725861 927.437169 NaN NaN NaN NaN NaN NaN NaN 66.053 1 65.57 65.07 66.07 -0.48323 0 0 0 0.97444 1 36059 36059 2.5775 0.27475 1 + 28562 17870 19121 19491 33564 33564 -0.02945256482496461 KTGHGMAF 8 Unmodified _KTGHGMAF_ 0 0 0 REV__ENSG00000244694|ENST00000339488|PTCHD4 REV__ENSG00000244694|ENST00000339488|PTCHD4 MSMS AL20221201_MKP_PDAC_01 4 424.7066040039062 2 424.707805 847.401058 NaN NaN NaN NaN NaN NaN NaN 19.468 1 16.811 16.311 17.311 -2.6564 0 0 0 0.88073 1 10314 10314 19.439 0 1 + 28563 24485 19122 19492 33565 33565 -0.02874668868707886 KTGRIIHI 8 Unmodified _KTGRIIHI_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.30078125 2 469.300719 936.586885 1.1146 0.00052308 -0.65402 -0.00030693 0.46058 0.00021615 469.30039510984517 21.101 0.30165 18.408 18.225 18.526 -2.693 35 16 3 0 0 0 0.55032 1 11218 11218 30.225 3.8835 1 5505300 + 28564 21863 19123 19493 33566 33566 0.11605476642284884 KTGSKMKYVI 10 Unmodified _KTGSKMKYVI_ 0 0 0 REV__nc|ENSG00000077782|P11362-21|FGFR1 REV__nc|ENSG00000077782|P11362-21|FGFR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8329467773438 2 577.833734 1153.65292 1.2791 0.00073913 -0.65614 -0.00037914 0.623 0.00035999 577.8337278741951 64.614 0.5826 58.439 58.132 58.715 -6.1757 71 32 3 0 0 0 0.38026 1 41961 41961 20.415 0 1 35182000 + 28565 17617 19124 19494 33567 33567 0.08223504702164064 KTHAAETEMTL 11 Unmodified _KTHAAETEMTL_ 0 0 0 ENST00000580482.5_1_17:63793289-63848140:-|nuORF;ENSG00000154240|ENST00000535342|CEP112 ENST00000580482.5_1_17:63793289-63848140:-|nuORF ENST00000580482.5_1_17:63793289-63848140:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3052368164062 2 616.302995 1230.59144 0.57257 0.00035287 1.2626 0.00077816 1.8352 0.001131 616.3037814685135 54.788 0.20534 54.721 54.579 54.785 -0.066936 17 9 3 0 0 0 0.65108 1 29768 29768 8.7454 2.5396 1 1415100 28566 6310 19125 19495 33568 33568 -0.01463471787792514 KTHICVTRAF 10 Unmodified _KTHICVTRAF_ 0 0 0 ENSG00000115361|ENST00000233710|ACADL ENSG00000115361|ENST00000233710|ACADL ENSG00000115361|ENST00000233710|ACADL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5758361816406 3 392.549976 1174.6281 -0.041173 -1.6162E-05 0.69918 0.00027446 0.658 0.0002583 392.5504697853358 17.974 0.23226 17.98 17.901 18.134 0.0060463 36 16 3 0 0 0 0.71123 1 9088 9088 0.69767 0 1 2963000 28567 3115 19126 19496 33569 33569 0.04776869619422541 KTIDSERQRI 10 Unmodified _KTIDSERQRI_ 0 0 0 REV__ENSG00000120438|ENST00000321394|TCP1 REV__ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.9017333984375 3 415.901843 1244.6837 -0.5522 -0.00022966 0.50977 0.00021201 -0.042435 -1.7649E-05 415.9019070407382 17.625 0.11252 17.639 17.598 17.711 0.013865 46 22 3 0 0 0 0.6966 1 8776 8776 1.5923 0 1 1313700 + 28568 19242 19127 19497 33570 33570 0.07114374340744689 KTIEDTLMTV 10 Oxidation (M) _KTIEDTLM(Oxidation (M))TV_ KTIEDTLM(1)TV KTIEDTLM(67)TV 0 0 1 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8023681640625 2 583.802297 1165.59004 NaN NaN NaN NaN NaN NaN NaN 46.855 1 46.855 46.355 47.355 0 0 0 0 0.013994 1 25627 25627 67.081 7.0068 1 28569 7147 19128 19498 33571 33571 1234 0.013868941234477461 KTKKISKKLS 10 Unmodified _KTKKISKKLS_ 0 0 0 nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENSG00000131941|ENST00000254260|RHPN2;ENST00000592247.1_1_19:33470904-33481620:-|nuORF nc|ENSG00000131941|Q8IUC4-2|RHPN2 nc|ENSG00000131941|Q8IUC4-2|RHPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8904418945312 2 580.889898 1159.76524 -0.15377 -8.9321E-05 0.59286 0.00034439 0.43909 0.00025506 581.3917415279716 103.79 0.1084 103.74 103.67 103.78 -0.048737 6 4 2 0 0 0 0.72292 1 57644 57644 0.35063 0 1 1717000 28570 4360 19129 19499 33572 33572 0.1917510177065651 KTKLHRVTV 9 Unmodified _KTKLHRVTV_ 0 0 0 REV__nc|ENSG00000147642|Q9NX95-5|SYBU REV__nc|ENSG00000147642|Q9NX95-5|SYBU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2331848144531 3 361.232864 1080.67676 0.11914 4.3037E-05 -0.13739 -4.9629E-05 -0.018249 -6.592E-06 361.23277214512325 24.656 0.51168 24.68 24.462 24.974 0.024427 42 21 3 0 0 0 0.43515 2 12671 12671;12779 10.8 0 1 24905000 + 28571 20905 19130 19500 33573;33574 33573 0.13965106250816461 KTKLHRVTV 9 Unmodified _KTKLHRVTV_ 0 0 0 REV__nc|ENSG00000147642|Q9NX95-5|SYBU REV__nc|ENSG00000147642|Q9NX95-5|SYBU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2322998046875 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 24.98 1 25.005 24.505 25.505 0.024429 0 0 0 0.82852 1 12907 12907 4.1895 1.4543 1 + 28572 20905 19130 19500 33575 33575 0.13965106250816461 KTKMTKKT 8 Unmodified _KTKMTKKT_ 0 0 0 ENSG00000117016|ENST00000372684|RIMS3 ENSG00000117016|ENST00000372684|RIMS3 ENSG00000117016|ENST00000372684|RIMS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2937316894531 2 483.294245 964.573937 NaN NaN NaN NaN NaN NaN NaN 14.493 1 14.5 14 15 0.0073986 0 0 0 0.97444 1 7187 7187 0 0 1 28573 3278 19131 19501 33576 33576 0.09023277467861135 KTKSQHRKL 9 Unmodified _KTKSQHRKL_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9000244140625 3 375.899885 1124.67783 0.92417 0.0003474 -0.29007 -0.00010904 0.6341 0.00023836 375.89976201635716 17.377 0.25841 14.791 14.637 14.895 -2.5866 93 42 3 0 0 0 0.29507 1 9123 9123 17.443 1.704 1 15819000 + 28574 23945 19132 19502 33577 33577 0.12047320619740276 KTKVTAASFLF 11 Unmodified _KTKVTAASFLF_ 0 0 0 REV__ENST00000398316.7_1_13:49684467-49684536:+|nuORF REV__ENST00000398316.7_1_13:49684467-49684536:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.85205078125 2 606.852981 1211.69141 NaN NaN NaN NaN NaN NaN NaN 82.654 1 82.157 81.657 82.657 -0.49751 0 0 0 0.94184 1 45247 45247 1.1933 0.39971 1 + 28575 26565 19133 19503 33578 33578 0.09403133608293501 KTKYGSQEHPI 11 Unmodified _KTKYGSQEHPI_ 0 0 0 nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.5603942871094 3 429.894577 1286.6619 0.95938 0.00041243 0.92005 0.00039552 1.8794 0.00080796 430.2294327461263 36.196 0.35 32.004 31.802 32.152 -4.1928 30 20 2 0 0 0 0.57006 1 21074 21074 12.856 3.0917 1 22191000 28576 9439 19134 19504 33579 33579 0.030035695921924344 KTLEGEFSV 9 Unmodified _KTLEGEFSV_ 0 0 0 ENSG00000100811|ENST00000262238|YY1;ENSG00000230797|ENST00000429584|YY2 ENSG00000100811|ENST00000262238|YY1 ENSG00000100811|ENST00000262238|YY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2640380859375 2 505.263665 1008.51278 0.4751 0.00024005 -0.92293 -0.00046632 -0.44783 -0.00022627 505.26366445320303 45.682 0.23671 45.682 45.567 45.803 0 18 11 2 0 0 0 0.033587 1 24895 24895 53.404 3.471 1 4777000 28577 1878 19135 19505 33580 33580 0.008860439694444722 KTLGKLWRL 9 Unmodified _KTLGKLWRL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.24169921875 3 372.241359 1113.70225 1.7426 0.00064867 -0.55899 -0.00020808 1.1836 0.00044059 372.24114022760494 89.399 0.31787 83.223 83.058 83.376 -6.1757 27 17 2 0 0 0 0.11412 1 59009 59009 31.636 3.4021 1 17472000 28578 3847 19136 19506 33581 33581 0.14994580773259258 KTLVLILVVLI 11 Unmodified _KTLVLILVVLI_ 0 0 0 nc|ENSG00000118432|P21554-2|CNR1;nc|ENSG00000118432|P21554-3|CNR1;ENSG00000118432|ENST00000369501|CNR1 nc|ENSG00000118432|P21554-2|CNR1 nc|ENSG00000118432|P21554-2|CNR1 MSMS AL20221201_MKP_PDAC_01 4 612.43896484375 2 612.438692 1222.86283 NaN NaN NaN NaN NaN NaN NaN 14.591 1 12.089 11.589 12.589 -2.5029 0 0 0 0.9435 1 7422 7422 0 0 1 28579 3371 19137 19507 33582 33582 0.26031490646801103 KTNRTAIAI 9 Unmodified _KTNRTAIAI_ 0 0 0 REV__ENST00000474481.1_1_1:1421456-1424590:+|nuORF REV__ENST00000474481.1_1_1:1421456-1424590:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.3017883300781 2 494.300916 986.587279 0.64968 0.00032114 -0.045168 -2.2327E-05 0.60451 0.00029881 494.3008605881484 88.025 0.34064 87.521 87.36 87.701 -0.50423 29 15 2 0 0 0 0.62242 2 48105 48105;48213 0 0 1 1953700 + 28580 21511 19138 19508 33583;33584 33583 0.0934485157143854 KTPARKKRLR 10 Unmodified _KTPARKKRLR_ 0 0 0 nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.4173583984375 2 627.41748 1252.82041 1.3817 0.00086693 0.13974 8.7677E-05 1.5215 0.00095461 627.4175147398548 105.08 0.16051 98.906 98.803 98.964 -6.1757 51 21 3 0 0 0 0.71276 1 70327 70327 1.4819 1.0812 1 242420000 28581 4388 19139 19509 33585 33585 0.20410953081795924 KTPILRTVQIL 11 Unmodified _KTPILRTVQIL_ 0 0 0 ENST00000204566.6_1_15:65255658-65255769:-|nuORF ENST00000204566.6_1_15:65255658-65255769:-|nuORF ENST00000204566.6_1_15:65255658-65255769:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.4166870117188 2 641.41628 1280.81801 1.39 0.00089158 0.18957 0.00012159 1.5796 0.0010132 641.4158199749974 105.79 0.92021 99.61 99.416 100.34 -6.1757 343 124 5 0 0 0 0.7326 2 70912 70912;71120 1.1933 1.1933 1 46385000 28582 10988 19140 19510 33586;33587 33586 0.1888305983347891 KTPKRHKHK 9 Unmodified _KTPKRHKHK_ 0 0 0 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3643188476562 2 580.362173 1158.70979 1.5724 0.00091254 1.1613 0.00067396 2.7336 0.0015865 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.59218 1 71099 71099 1.8442 0.36234 1 10927000 + 28583 17743 19141 19511 33588 33588 0.13678733093547635 KTPNLESEEMF 11 Unmodified _KTPNLESEEMF_ 0 0 0 REV__ENST00000600178.5_1_19:39307593-39308076:-|nuORF REV__ENST00000600178.5_1_19:39307593-39308076:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2072448730469 3 442.207832 1323.60167 NaN NaN NaN NaN NaN NaN NaN 32.696 1 32.726 32.226 33.226 0.029743 0 0 0 0.93933 1 17174 17174 2.6312 1.8547 1 + 28584 29247 19142 19512 33589 33589 -0.047189088532377355 KTPPIRKRKK 10 Unmodified _KTPPIRKRKK_ 0 0 0 REV__ENSG00000100395|ENST00000216237|L3MBTL2 REV__ENSG00000100395|ENST00000216237|L3MBTL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.4217529296875 2 626.422231 1250.82991 NaN NaN NaN NaN NaN NaN NaN 103.65 1 103.6 103.1 104.1 -0.047928 0 0 0 1.0029 1 57562 57562 0.35063 0.043601 1 + 28585 18060 19143 19513 33590 33590 0.21452721367290906 KTPQLLLNYQQ 11 Unmodified _KTPQLLLNYQQ_ 0 0 0 ENST00000435485.5_1_9:109350660-109366068:+|nuORF ENST00000435485.5_1_9:109350660-109366068:+|nuORF ENST00000435485.5_1_9:109350660-109366068:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.3765258789062 2 673.377352 1344.74015 0.51757 0.00034852 -0.85888 -0.00057835 -0.34131 -0.00022983 673.3767320437838 30.086 0.28211 26.589 26.53 26.812 -3.497 22 13 2 0 0 0 0.63534 1 16976 16976 9.544 0.16085 1 16741000 28586 13311 19144 19514 33591 33591 0.08157002177426875 KTPVIQLHKL 10 Unmodified _KTPVIQLHKL_ 0 0 0 REV__ENST00000286800.7_1_21:30715464-30715563:+|nuORF REV__ENST00000286800.7_1_21:30715464-30715563:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 588.8776245117188 2 588.876791 1175.73903 NaN NaN NaN NaN NaN NaN NaN 106.2 1 100.02 99.522 100.52 -6.1757 0 0 0 0.99248 1 71098 71098 1.4819 0.95714 1 + 28587 25225 19145 19515 33592 33592 0.15818832599165944 KTQIRLPIM 9 Unmodified _KTQIRLPIM_ 0 0 0 REV__ENST00000430328.6_1_2:152273107-152273161:+|nuORF REV__ENST00000430328.6_1_2:152273107-152273161:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2273254394531 3 367.226722 1098.65834 1.2359 0.00045385 0.13272 4.874E-05 1.3686 0.00050259 367.2266871166608 38.916 0.3926 34.466 34.282 34.675 -4.4509 67 24 5 0 0 0 0.14 1 23127 23127 21.59 0 1 17322000 + 28588 26962 19146 19516 33593 33593 0.11295228284620862 KTRKRKRKAKE 11 Unmodified _KTRKRKRKAKE_ 0 0 0 nc|ENSG00000167562|Q9NV72|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 MSMS AL20221201_MKP_PDAC_01 4 476.9794921875 3 476.979309 1427.9161 NaN NaN NaN NaN NaN NaN NaN 17.746 1 15.159 14.659 15.659 -2.5866 0 0 0 0.94337 1 9307 9307 0.094841 0.094841 1 28589 16359 19147 19517 33594 33594 0.21925681202037595 KTRKRRRKRKK 11 Unmodified _KTRKRRRKRKK_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 771.0272216796875 2 771.026583 1540.03861 NaN NaN NaN NaN NaN NaN NaN 79.23 1 79.285 78.785 79.785 0.05497 0 0 0 0.9435 1 43771 43771 0 0 1 28590 11653 19148 19518 33595 33595 0.2901956272407915 KTRNFKHKT 9 Unmodified _KTRNFKHKT_ 0 0 0 ENSG00000144792|ENST00000322734|ZNF660 ENSG00000144792|ENST00000322734|ZNF660 ENSG00000144792|ENST00000322734|ZNF660 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8302612304688 2 580.338364 1158.66217 0.28347 0.00016451 -1.0164 -0.00058988 -0.73298 -0.00042538 580.337462732201 30.841 0.25529 30.871 30.737 30.992 0.030106 22 10 3 0 0 0 0.21052 1 16178 16178 6.7232 2.3939 1 1846000 28591 5644 19149 19519 33596 33596 0.0891903410267787 KTRYWSEAEAR 11 Unmodified _KTRYWSEAEAR_ 0 0 0 REV__CON__Q61726 REV__CON__Q61726 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5716857910156 3 466.237114 1395.68951 0.43049 0.00020071 -0.062589 -2.9181E-05 0.3679 0.00017153 466.2369515730122 84.517 0.498 84.017 83.729 84.227 -0.49961 60 22 3 0 0 0 0.71728 1 46163 46163 2.6312 0.19645 1 3228800 + + 28592 16883 19150 19520 33597 33597 0.007494728524079619 KTSSALATLL 10 Unmodified _KTSSALATLL_ 0 0 0 REV__ENSG00000163736|ENST00000296028|PPBP REV__ENSG00000163736|ENST00000296028|PPBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1004.597900390625 1 1004.59864 1003.59136 3.3893 0.0034049 -0.62728 -0.00063017 2.762 0.0027747 1004.5968977972941 99.687 0.24155 99.651 99.529 99.771 -0.036301 10 8 2 0 0 0 0.1899 1 55396 55396 34.932 17.99 1 4730600 + 28593 21809 19151 19521 33598 33598 0.08970896274524875 KTSTYRLHF 9 Unmodified _KTSTYRLHF_ 0 0 0 REV__ENST00000354870.5_1_8:22035226-22069238:+|nuORF REV__ENST00000354870.5_1_8:22035226-22069238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8772888183594 3 384.876857 1151.60874 1.2529 0.00048222 -0.009062 -3.4878E-06 1.2439 0.00047873 384.8768985263366 18.816 0.58271 16.195 16.051 16.634 -2.6215 90 40 3 0 0 0 0.45045 1 10087 10087 6.6304 0 1 20358000 + 28594 22315 19152 19522 33599 33599 0.03900236600156859 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2810363769531 2 481.281857 960.549162 0.034229 1.6474E-05 -0.045972 -2.2125E-05 -0.011742 -5.6514E-06 481.281700864507 40.38 0.2341 40.38 40.257 40.491 0 20 11 2 0 0 0 0.047788 1 21675 21675 45.7 15.063 1 5459800 28595 3152 19153 19523 33600 33600 0.06730920866141332 KTTTIAVEV 9 Unmodified _KTTTIAVEV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2828369140625 2 481.281857 960.549162 0.60637 0.00029183 0.25474 0.0001226 0.86111 0.00041444 481.2819922369389 45.466 0.39725 40.511 40.332 40.729 -4.9549 42 26 2 0 0 0 0.015688 2 27982 27834;27982 67.838 16.208 1 17584000 28596 3152 19153 19523 33601;33602 33602 0.06730920866141332 KTTWFQGLT 9 Unmodified _KTTWFQGLT_ 0 0 0 REV__ENSG00000162496|ENST00000616661|DHRS3 REV__ENSG00000162496|ENST00000616661|DHRS3 MSMS AL20221201_MKP_PDAC_01 4 361.1930236816406 3 361.194075 1080.5604 NaN NaN NaN NaN NaN NaN NaN 15.452 1 12.924 12.424 13.424 -2.5273 0 0 0 0.73776 1 7928 7928 5.4027 0.5057 1 + 28597 21652 19154 19524 33603 33603 0.023337429602634074 KTVQKCRRRWP 11 Unmodified _KTVQKCRRRWP_ 0 0 0 REV__ENST00000263368.8_1_19:40964440-40971651:-|nuORF REV__ENST00000263368.8_1_19:40964440-40971651:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2120666503906 4 365.212215 1456.81975 -0.13158 -4.8054E-05 -1.053 -0.00038455 -1.1845 -0.00043261 365.21207963564075 37.704 0.59628 37.721 37.346 37.942 0.01704 99 28 5 0 0 0 0.73237 2 20007 20007;20114 1.2148 1.12 1 72634000 + 28598 25048 19155 19525 33604;33605 33604 0.10961790370424751 KTWYQNRRMKW 11 Unmodified _KTWYQNRRMKW_ 0 0 0 nc|ENSG00000131668|Q9HBU1-2|BARX1;ENSG00000131668|ENST00000253968|BARX1;ENSG00000043039|ENST00000281437|BARX2 nc|ENSG00000131668|Q9HBU1-2|BARX1 nc|ENSG00000131668|Q9HBU1-2|BARX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.9454956054688 3 532.945388 1595.81434 1.1695 0.0006233 -0.11572 -6.1675E-05 1.0538 0.00056162 532.945312599265 70.887 0.76751 70.923 70.636 71.403 0.035507 83 34 4 0 0 0 0.74096 1 39041 39041 0.40827 0.32491 1 3433600 28599 668 19156 19526 33606 33606 0.0402606678792381 KVACTNWKRV 10 Unmodified _KVACTNWKRV_ 0 0 0 nc|ENSG00000180767|Q8NET6-2|CHST13;ENSG00000180767|ENST00000319340|CHST13;ENSG00000136213|ENST00000618655|CHST12 nc|ENSG00000180767|Q8NET6-2|CHST13 nc|ENSG00000180767|Q8NET6-2|CHST13 MSMS AL20221201_MKP_PDAC_01 4 402.2274780273438 3 402.225492 1203.65465 NaN NaN NaN NaN NaN NaN NaN 109.1 1 102.92 102.42 103.42 -6.1757 0 0 0 0.99388 1 72881 72881 0.56317 0 1 28600 4800 19157 19527 33607 33607 0.06096558510739669 KVADLVLML 9 Unmodified _KVADLVLML_ 0 0 0 nc|ENSG00000204172|Q5VTM2|AGAP9;ENSG00000165733|ENST00000374518|BMS1 nc|ENSG00000204172|Q5VTM2|AGAP9;ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.3070068359375 2 501.306821 1000.59909 1.1322 0.0005676 -0.02869 -1.4382E-05 1.1036 0.00055322 501.30667367677756 99.358 0.11487 93.182 93.128 93.243 -6.1757 12 7 2 0 0 0 0.036857 1 66138 66138 51.63 5.6089 1 36227000 28601 7384;16500 19158 19528 33608 33608 0.09881332270435905 KVALKLGLLLR 11 Unmodified _KVALKLGLLLR_ 0 0 0 ENSG00000185361|ENST00000327473|TNFAIP8L1 ENSG00000185361|ENST00000327473|TNFAIP8L1 ENSG00000185361|ENST00000327473|TNFAIP8L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.43359375 2 612.431733 1222.84891 NaN NaN NaN NaN NaN NaN NaN 61.4 1 60.911 60.411 61.411 -0.48932 0 0 0 0.94307 1 33442 33442 0.30703 0.30703 1 28602 9368 19159 19529 33609 33609 0.24640257938358445 KVANLTKH 8 Unmodified _KVANLTKH_ 0 0 0 ENSG00000269067|ENST00000594710|ZNF728 ENSG00000269067|ENST00000594710|ZNF728 ENSG00000269067|ENST00000594710|ZNF728 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7773742675781 2 455.777077 909.5396 0.58498 0.00026662 -0.33131 -0.000151 0.25367 0.00011562 455.7769137173459 27.081 0.28727 24.044 23.893 24.18 -3.0365 27 14 2 0 0 0 0.46677 2 14930 14930;15050 37.974 0 1 19457000 28603 10875 19160 19530 33610;33611 33610 0.08121197371258404 KVAPAPAVV 9 Unmodified _KVAPAPAVV_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2718505859375 2 426.271096 850.527639 1.4898 0.00063507 -0.012151 -5.1798E-06 1.4777 0.00062989 426.27104490705005 35.831 0.39608 31.638 31.44 31.837 -4.1928 59 24 3 0 0 0 0.10734 2 20831 20831;20970 32.305 5.9642 1 20647000 28604 5914 19161 19531 33612;33613 33612 0.09639580628083877 KVAPAPAVV 9 Unmodified _KVAPAPAVV_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 426.271096 850.527639 0.19801 8.4405E-05 0.38179 0.00016275 0.5798 0.00024715 426.27130099116516 31.381 0.2478 31.381 31.255 31.503 0 -0.12824 0.00019476 NaN 32.305 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2939500 28605 5914 19161 19531 0.09639580628083877 KVCKMITEQH 10 Unmodified _KVCKMITEQH_ 0 0 0 REV__ENSG00000169019|ENST00000381571|COMMD8 REV__ENSG00000169019|ENST00000381571|COMMD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.814208984375 2 608.812476 1215.6104 NaN NaN NaN NaN NaN NaN NaN 101.66 1 101.62 101.12 102.12 -0.045853 0 0 0 0.9997 1 56480 56480 0.40072 0 1 + 28606 22366 19162 19532 33614 33614 0.011217863022693564 KVCNEAKEKYY 11 Unmodified _KVCNEAKEKYY_ 0 0 0 REV__ENSG00000135521|ENST00000367576|LTV1 REV__ENSG00000135521|ENST00000367576|LTV1 MSMS AL20221201_MKP_PDAC_01 4 687.837646484375 2 687.839745 1373.66494 NaN NaN NaN NaN NaN NaN NaN 57.697 1 51.669 51.169 52.169 -6.0275 0 0 0 0.5508 1 36914 36914 22.658 6.509 1 + 28607 20075 19163 19533 33615 33615 -0.006949233453042325 KVCRRVTI 8 Unmodified _KVCRRVTI_ 0 0 0 ENST00000557794.5_1_15:101852587-102065343:-|nuORF ENST00000557794.5_1_15:101852587-102065343:-|nuORF ENST00000557794.5_1_15:101852587-102065343:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.8021240234375 2 487.800029 973.585505 NaN NaN NaN NaN NaN NaN NaN 100.03 1 99.996 99.496 100.5 -0.036301 0 0 0 0.97444 1 55560 55560 2.3027 0 1 28608 15265 19164 19534 33616 33616 0.09765519281882007 KVDAGPAPL 9 Unmodified _KVDAGPAPL_ 0 0 0 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 REV__nc|ENSG00000181090|Q9H9B1-4|EHMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.3889770507812 1 867.493444 866.486168 0.079454 6.8926E-05 0.030001 2.6026E-05 0.10946 9.4952E-05 867.4934119122181 49.013 0.54415 49.013 48.808 49.352 0 61 26 3 0 0 0 0.45045 1 26818 26818 10.074 0.6908 1 20281000 + 28609 23189 19165 19535 33617 33617 0.04758399868740071 KVDFLKKIEK 10 Unmodified _KVDFLKKIEK_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3903198242188 2 624.389731 1246.76491 1.3615 0.00085012 0.10574 6.6025E-05 1.4673 0.00091615 624.389369613785 105.79 0.89849 99.617 99.416 100.31 -6.1757 293 119 4 0 0 0 0.72292 1 71222 71222 0.35063 0 1 16001000 28610 4530 19166 19536 33618 33618 0.15139682050812553 KVDWNEERQN 10 Unmodified _KVDWNEERQN_ 0 0 0 nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000557186.5_1_14:102661449-102664205:+|nuORF;nc|ENSG00000140153|Q8TBZ3-3|WDR20 nc|ENSG00000140153|Q8TBZ3-7|WDR20 nc|ENSG00000140153|Q8TBZ3-7|WDR20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.8773803710938 3 439.877586 1316.61093 NaN NaN NaN NaN NaN NaN NaN 28.601 1 28.539 28.039 29.039 -0.062159 0 0 0 1.0019 1 14768 14768 0.15932 0 1 28611 16232 19167 19537 33619 33619 -0.03471379452662404 KVENPIDLYI 10 Unmodified _KVENPIDLYI_ 0 0 0 nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4 nc|ENSG00000179242|P55283-2|CDH4 nc|ENSG00000179242|P55283-2|CDH4 MSMS AL20221201_MKP_PDAC_01 4 602.2484130859375 2 602.334621 1202.65469 NaN NaN NaN NaN NaN NaN NaN 97.322 1 91.146 90.646 91.646 -6.1757 0 0 0 0.28083 1 64497 64497 38.176 1.6694 1 28612 8820 19168 19538 33620 33620 0.06146836991774762 KVEWSMSEDF 10 Unmodified _KVEWSMSEDF_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.80859375 2 629.276446 1256.53834 0.25142 0.00015821 0.36901 0.00023221 0.62044 0.00039043 629.2763912067101 64.796 0.32267 64.311 64.125 64.447 -0.48512 29 14 3 0 0 0 0.23412 1 35261 35261 9.3831 2.0939 1 1524800 28613 6282 19169 19539 33621 33621 -0.07966849570448176 KVFFRAGVL 9 Unmodified _KVFFRAGVL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8181762695312 2 518.818744 1035.62294 0.60955 0.00031625 -0.25081 -0.00013013 0.35874 0.00018612 518.8185761183622 49.358 0.22161 49.315 49.175 49.397 -0.04369 21 10 3 0 0 0 0.05447 1 26675 26675 43.858 25.723 1 2496900 28614 1800 19170 19540 33622 33622 0.10654933819137113 KVFPGKISV 9 Unmodified _KVFPGKISV_ 0 0 0 ENSG00000173702|ENST00000616727|MUC13;ENST00000490147.1_1_3:124639079-124646496:-|nuORF ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.8052062988281 2 487.805303 973.596052 0.40918 0.0001996 -0.37539 -0.00018312 0.033788 1.6482E-05 487.8050357311253 38.75 0.38194 38.761 38.559 38.941 0.011452 21 18 2 0 0 0 0.085319 1 20607 20607 36.506 13.77 1 1970600 28615 8357 19171 19541 33623 33623 0.10819825207943268 KVFPGKISV 9 Unmodified _KVFPGKISV_ 0 0 0 ENSG00000173702|ENST00000616727|MUC13;ENST00000490147.1_1_3:124639079-124646496:-|nuORF ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 MSMS AL20221201_MKP_PDAC_01 4 487.8060913085938 2 487.805303 973.596052 NaN NaN NaN NaN NaN NaN NaN 43.641 1 38.876 38.376 39.376 -4.7648 0 0 0 0.19623 1 26531 26531 31.268 15.421 1 28616 8357 19171 19541 33624 33624 0.10819825207943268 KVHVRMQGRL 10 Unmodified _KVHVRMQGRL_ 0 0 0 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 REV__nc|ENSG00000217128|Q8TF40-3|FNIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.9111633300781 3 408.576636 1222.70808 0.085415 3.4899E-05 1.0008 0.0004089 1.0862 0.00044379 408.9112548009878 39.696 0.3723 39.701 39.522 39.894 0.0050583 56 17 4 0 0 0 0.69126 1 21209 21209 3.8763 0 1 4892000 + 28617 24350 19172 19542 33625 33625 0.10563356013312841 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.83056640625 2 567.829506 1133.64446 0.3515 0.00019959 0.51292 0.00029125 0.86442 0.00049085 567.8299076584975 43.269 0.25598 43.269 43.143 43.399 0 35 12 4 0 0 0 0.0090383 1 23462 23462 93.166 45.417 1 15890000 28618 5548 19173 19543 33626 33626 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8886413574219 3 378.888763 1133.64446 0.083675 3.1703E-05 0.3116 0.00011806 0.39528 0.00014977 378.8888142922627 43.279 0.29505 43.279 43.143 43.438 0 34 14 3 0 0 0 0.040733 1 23472 23472 49.527 24.646 1 12229000 28619 5548 19173 19543 33627 33627 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8301391601562 2 567.829506 1133.64446 0.34236 0.0001944 0.070993 4.0312E-05 0.41335 0.00023471 567.8295356856986 43.485 0.16543 43.175 43.066 43.231 -0.31039 12 7 2 0 0 0 0.012803 1 23126 23126 87.258 35.628 1 12240000 28620 5548 19173 19543 33628 33628 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8308715820312 2 567.829506 1133.64446 0.81993 0.00046558 0.17405 9.883E-05 0.99398 0.00056441 567.8297721658159 48.948 0.30738 43.552 43.354 43.661 -5.3961 34 18 2 0 0 0 0.012803 1 30445 30445 87.258 43.486 1 65779000 28621 5548 19173 19543 33629 33629 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8887634277344 3 378.888763 1133.64446 1.1564 0.00043814 0.29335 0.00011115 1.4497 0.00054929 378.88867839496436 48.991 0.21179 43.594 43.407 43.619 -5.3961 20 12 2 0 0 0 0.047194 1 30510 30510 46.022 21.141 1 27305000 28622 5548 19173 19543 33630 33630 0.08298274057165145 KVIDEIYRV 9 Unmodified _KVIDEIYRV_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 378.888763 1133.64446 0.17056 6.4623E-05 -0.50092 -0.00018979 -0.33036 -0.00012517 378.88869573851633 43.479 0.16581 43.168 43.086 43.252 -0.31039 -0.17885 -0.00083982 NaN 49.527 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4741600 28623 5548 19173 19543 0.08298274057165145 KVIDYVPGI 9 Unmodified _KVIDYVPGI_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2938537597656 2 502.294768 1002.57498 -0.080275 -4.0322E-05 -0.83361 -0.00041872 -0.91389 -0.00045904 502.29437970050213 58.564 0.22955 58.073 57.963 58.193 -0.49079 18 10 2 0 0 0 0.028475 1 31856 31856 56.177 25.541 1 4703500 28624 7043 19174 19544 33631 33631 0.07379815108413368 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000100804|ENST00000361611|PSMB5;ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8213500976562 2 544.82115 1087.62775 0.42869 0.00023356 0.44002 0.00023973 0.86871 0.00047329 544.8210539093253 59.586 0.37513 59.586 59.379 59.754 0 40 16 4 0 0 0 0.023481 1 33158 33158 60.074 20.124 1 26435000 28625 10257;1877 19175 19545 33632 33632 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000100804|ENST00000361611|PSMB5;ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.821044921875 2 544.82115 1087.62775 -0.059614 -3.2479E-05 -0.033104 -1.8036E-05 -0.092718 -5.0514E-05 544.8209566415076 60.048 0.3738 59.557 59.372 59.746 -0.49079 59 18 5 0 0 0 0.017075 2 32634 32634;32736 66.457 26.507 1 153960000 28626 10257;1877 19175 19545 33633;33634 33633 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000100804|ENST00000361611|PSMB5;ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8211059570312 2 544.82115 1087.62775 0.2911 0.0001586 0.077827 4.2402E-05 0.36892 0.000201 544.8209975133738 59.698 0.29684 59.644 59.479 59.776 -0.053062 26 14 2 0 0 0 0.020973 1 32526 32526 62.573 31.936 1 24024000 28627 10257;1877 19175 19545 33635 33635 0.08743773171227076 KVIEINPYL 9 Unmodified _KVIEINPYL_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000100804|ENST00000361611|PSMB5;ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8213500976562 2 544.82115 1087.62775 0.31882 0.0001737 0.37592 0.00020481 0.69474 0.00037851 544.8210942103046 65.704 1.0963 59.528 59.236 60.332 -6.1757 176 63 4 0 0 0 0.011671 3 42702 42568;42702;42841 75.761 45.124 1 238720000 28628 10257;1877 19175 19545 33636;33637;33638 33637 0.08743773171227076 KVIEINPYLL 10 Unmodified _KVIEINPYLL_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000100804|ENST00000361611|PSMB5;ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.8657836914062 2 601.363182 1200.71181 0.74372 0.00044725 -0.31859 -0.00019159 0.42513 0.00025566 601.3625600623495 74.883 0.19139 74.406 74.325 74.516 -0.47655 13 7 2 0 0 0 0.46077 1 40999 40999 18.373 4.8652 1 962270 28629 10257;1877 19176 19546 33639 33639 0.11948304268116772 KVIKKSYS 8 Unmodified _KVIKKSYS_ 0 0 0 REV__ENSG00000159086|ENST00000331923|PAXBP1 REV__ENSG00000159086|ENST00000331923|PAXBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7994079589844 2 476.794935 951.575317 1.0841 0.00051691 0.60646 0.00028916 1.6906 0.00080607 476.7953380335881 91.005 0.78146 84.829 84.406 85.188 -6.1757 71 45 2 0 0 0 0.71527 1 60358 60358 15.847 1.9411 1 13844000 + 28630 21458 19177 19547 33640 33640 0.09759234828277386 KVIQRSITGM 10 Unmodified _KVIQRSITGM_ 0 0 0 REV__ENST00000481476.1_1_9:132501610-132501871:-|nuORF REV__ENST00000481476.1_1_9:132501610-132501871:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.1937255859375 3 378.221748 1131.64341 1.2173 0.00046041 1.5837 0.00059897 2.8009 0.0010594 378.22259168213816 18.493 0.24637 15.872 15.755 16.001 -2.6215 57 27 3 0 0 0 0.23162 1 9731 9731 7.4771 0 1 7080200 + 28631 27696 19178 19548 33641 33641 0.08285736416632972 KVITDIHWL 9 Unmodified _KVITDIHWL_ 0 0 0 nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 nc|ENSG00000162643|Q8IWG1-2|DNAI3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5528259277344 3 375.553603 1123.63898 1.4853 0.00055782 -2.6989 -0.0010136 -1.2135 -0.00045575 375.5522106449793 21.931 0.33999 19.196 19.054 19.394 -2.7348 46 19 3 0 0 0 0.34134 1 11788 11788 15.248 7.7714 1 7884700 28632 6887 19179 19549 33642 33642 0.08210595265359188 KVKKKPQAI 9 Unmodified _KVKKKPQAI_ 0 0 0 REV__ENSG00000153779|ENST00000283891|TGIF2LX REV__ENSG00000153779|ENST00000283891|TGIF2LX MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3538818359375 2 520.352951 1038.69135 1.6713 0.00086967 -0.56771 -0.00029541 1.1036 0.00057426 520.352614202654 104.28 0.1947 98.102 98.001 98.196 -6.1757 33 23 2 0 0 0 0.61381 1 69847 69847 0.52476 0 1 9372100 + 28633 21182 19180 19550 33643 33643 0.17355178398975113 KVKPAAGC 8 Unmodified _KVKPAAGC_ 0 0 0 REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2214050292969 2 387.220549 772.426544 1.9509 0.00075541 1.3712 0.00053096 3.3221 0.0012864 387.22102028049073 105.35 0.13037 99.177 99.129 99.259 -6.1757 67 36 2 0 0 0 0.80975 1 70573 70573 0.79363 0 1 69500000 + 28634 29051 19181 19551 33644 33644 0.03122805653731575 KVKPGSTCVVF 11 Unmodified _KVKPGSTCVVF_ 0 0 0 ENSG00000196344|ENST00000437033|ADH7;nc|ENSG00000196344|P40394|ADH7;nc|ENSG00000196344|P40394-2|ADH7 ENSG00000196344|ENST00000437033|ADH7 ENSG00000196344|ENST00000437033|ADH7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.770263671875 2 582.825909 1163.63727 0.50702 0.0002955 -2.9491 -0.0017188 -2.4421 -0.0014233 582.8246323600082 51.712 0.23793 51.653 51.513 51.751 -0.058918 26 11 3 0 0 0 0.27675 1 27964 27964 20.415 3.3016 1 3958000 28635 9802 19182 19552 33645 33645 0.06199218185111022 KVKQLRLERE 10 Unmodified _KVKQLRLERE_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.6021423339844 3 433.601616 1297.78302 2.335 0.0010125 -2.0623 -0.00089422 0.27272 0.00011825 433.60069433608703 95.56 0.43758 95.564 95.404 95.842 0.004158 25 16 2 0 0 0 0.72497 1 53112 53112 0.12286 0 1 1103100 28636 2301 19183 19553 33646 33646 0.14603817025476928 KVKRAKKAK 9 Unmodified _KVKRAKKAK_ 0 0 0 REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2 REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1057.569091796875 1 1056.73641 1055.72913 0.39919 0.00042184 -1.4587 -0.0015415 -1.0595 -0.0011197 1057.734360041808 57.243 0.083248 56.753 56.69 56.773 -0.48974 5 3 2 0 0 0 0.62242 1 31082 31082 0 0 1 699720 + 28637 18234 19184 19554 33647 33647 0.20349689384443082 KVKYMATQL 9 Unmodified _KVKYMATQL_ 0 0 0 nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;ENSG00000243156|ENST00000441493|MICAL3 nc|ENSG00000243156|Q7RTP6-2|MICAL3 nc|ENSG00000243156|Q7RTP6-2|MICAL3 MSMS AL20221201_MKP_PDAC_01 4 361.2089233398438 3 361.207327 1080.60015 NaN NaN NaN NaN NaN NaN NaN 81.484 1 75.308 74.808 75.808 -6.1757 0 0 0 0.46757 1 53486 53486 11.495 0 1 28638 10705 19185 19555 33648 33648 0.06307546639345674 KVLCTSCAMF 10 Unmodified _KVLCTSCAMF_ 0 0 0 nc|ENSG00000184990|O15304-2|SIVA1;ENSG00000184990|ENST00000329967|SIVA1 nc|ENSG00000184990|O15304-2|SIVA1 nc|ENSG00000184990|O15304-2|SIVA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.17431640625 3 368.174641 1101.50209 0.032478 1.1958E-05 0.21402 7.8797E-05 0.2465 9.0755E-05 368.17460061912874 35.888 0.27789 35.888 35.732 36.01 0 26 13 3 0 0 0 0.67033 1 18967 18967 3.3196 0 1 6101000 28639 9312 19186 19556 33649 33649 -0.04459721272519346 KVLCTSCAMF 10 Unmodified _KVLCTSCAMF_ 0 0 0 nc|ENSG00000184990|O15304-2|SIVA1;ENSG00000184990|ENST00000329967|SIVA1 nc|ENSG00000184990|O15304-2|SIVA1 nc|ENSG00000184990|O15304-2|SIVA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 368.174641 1101.50209 0.032478 1.1958E-05 0.21402 7.8797E-05 0.2465 9.0755E-05 368.17460061912874 35.888 0.27789 35.888 35.732 36.01 0 0 0 NaN 3.3196 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6101000 28640 9312 19186 19556 -0.04459721272519346 KVLDFEHFL 9 Unmodified _KVLDFEHFL_ 0 0 0 ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6;ENSG00000092841|ENST00000550697|MYL6;BGN-MYL6|2|fusion;BGN-MYL6|1|fusion ENST00000548725.5_1_12:56552185-56553955:+|nuORF ENST00000548725.5_1_12:56552185-56553955:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.21044921875 3 383.209725 1146.60735 0.54314 0.00020814 0.046469 1.7808E-05 0.58961 0.00022595 383.2094446547029 71.772 0.31683 71.295 71.098 71.415 -0.47609 26 12 3 0 0 0 0.094149 1 39278 39278 26.021 18.412 1 1103800 28641 43 19187 19557 33650 33650 0.03990602511407815 KVLDKCQEV 9 Carbamidomethyl (C) _KVLDKC(Carbamidomethyl (C))QEV_ KVLDKC(1)QEV KVLDKC(59)QEV 0 1 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7965087890625 2 559.797349 1117.58014 1.1444 0.00064064 -0.88643 -0.00049622 0.25798 0.00014441 559.7969036792547 19.314 0.2363 16.658 16.534 16.771 -2.6564 27 16 2 0 0 0 0.024507 1 10203 10203 59.052 22.546 1 5486900 28642 10277 19188 19558 33651 33651 928 0.026057509087195285 KVLDLKINL 9 Unmodified _KVLDLKINL_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3443603515625 2 528.344792 1054.67503 0.30579 0.00016156 -0.16709 -8.828E-05 0.1387 7.3281E-05 528.3447475759051 60.61 0.21512 60.566 60.476 60.691 -0.043507 17 10 2 0 0 0 0.0039769 1 33063 33063 145.13 41.71 1 6645600 28643 10031 19189 19559 33652 33652 0.14988052442208755 KVLDLKINL 9 Unmodified _KVLDLKINL_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3442993164062 2 528.344792 1054.67503 0.9542 0.00050415 0.10317 5.4509E-05 1.0574 0.00055865 528.3445532882106 90.061 0.23187 83.885 83.756 83.988 -6.1757 30 12 3 0 0 0 0.0015395 1 59424 59424 160.69 35.16 1 17761000 28644 10031 19189 19559 33653 33653 0.14988052442208755 KVLDLRINL 9 Unmodified _KVLDLRINL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.347900390625 2 542.347866 1082.68118 0.27563 0.00014949 -0.31967 -0.00017337 -0.044034 -2.3882E-05 542.3475953870351 61.825 0.24031 61.793 61.629 61.869 -0.032787 21 11 2 0 0 0 0.023481 1 33753 33753 60.074 21.898 1 6397600 28645 4107 19190 19560 33654 33654 0.143145706737414 KVLDLRINL 9 Unmodified _KVLDLRINL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.9017944335938 3 361.901003 1082.68118 1.4277 0.00051669 0.30951 0.00011201 1.7372 0.0006287 361.9011640395648 91.287 0.29437 85.111 84.939 85.233 -6.1757 32 16 3 0 0 0 0.017075 1 60334 60334 61.09 23.116 1 9914900 28646 4107 19190 19560 33655 33655 0.143145706737414 KVLDLRINL 9 Unmodified _KVLDLRINL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3485717773438 2 542.347866 1082.68118 0.63068 0.00034205 0.33747 0.00018303 0.96815 0.00052508 542.3480140055065 91.3 0.3221 85.125 84.911 85.233 -6.1757 33 18 3 0 0 0 0.036857 1 60353 60353 51.63 20.361 1 12210000 28647 4107 19190 19560 33656 33656 0.143145706737414 KVLDVSDLESV 11 Unmodified _KVLDVSDLESV_ 0 0 0 SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant;nc|ENSG00000172830|Q8TE77-2|SSH3;nc|ENSG00000172830|Q8TE77-3|SSH3;ENSG00000172830|ENST00000308127|SSH3 SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.3262939453125 2 602.326993 1202.63943 0.068514 4.1268E-05 0.12312 7.4156E-05 0.19163 0.00011542 602.326963618127 58.137 0.30008 58.137 57.99 58.29 0 29 11 3 0 0 0 3.9134E-06 1 32336 32336 97.741 37.667 1 7894200 28648 8261 19191 19561 33657 33657 0.04621925403876048 KVLDVSDLESV 11 Unmodified _KVLDVSDLESV_ 0 0 0 SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant;nc|ENSG00000172830|Q8TE77-2|SSH3;nc|ENSG00000172830|Q8TE77-3|SSH3;ENSG00000172830|ENST00000308127|SSH3 SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant SSH3|p.N360Tfs*64|1|0.09|ENSG00000172830|chr11:67309410-67309428|TTGAACATGGCCCGGGAGA/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 602.3263549804688 2 602.326993 1202.63943 NaN NaN NaN NaN NaN NaN NaN 65.732 1 59.557 59.057 60.057 -6.1757 0 0 0 0.10594 1 42692 42692 49.742 24.751 1 28649 8261 19191 19561 33658 33658 0.04621925403876048 KVLEILHRV 9 Unmodified _KVLEILHRV_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.5731506347656 3 369.572998 1105.69716 -0.25013 -9.244E-05 1.1478 0.0004242 0.89769 0.00033176 369.57337028821166 37.143 0.26274 36.894 36.751 37.014 -0.2497 25 10 3 0 0 0 0.12357 1 19524 19524 30.703 22.758 1 2165000 28650 5949 19192 19562 33659 33659 0.14854276910659792 KVLEILHRV 9 Unmodified _KVLEILHRV_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.9073486328125 3 369.572998 1105.69716 1.9687 0.00072756 -1.1737 -0.00043376 0.79497 0.0002938 369.90670100332363 41.92 0.30068 37.312 37.127 37.428 -4.6079 33 18 2 0 0 0 0.52759 1 25275 25275 5.7834 3.0482 1 9320800 28651 5949 19192 19562 33660 33660 0.14854276910659792 KVLEILHRV 9 Unmodified _KVLEILHRV_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5735168457031 3 369.572998 1105.69716 1.3292 0.00049124 -0.23707 -8.7613E-05 1.0922 0.00040363 369.57285100984626 84.227 0.54111 78.052 77.74 78.281 -6.1757 75 29 3 0 0 0 0.037118 2 55366 55366;55507 51.488 36.531 1 29178000 28652 5949 19192 19562 33661;33662 33661 0.14854276910659792 KVLEPSETLVV 11 Unmodified _KVLEPSETLVV_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.3552856445312 2 607.355554 1212.69655 0.28178 0.00017114 -0.17999 -0.00010932 0.10179 6.1825E-05 607.3552261858254 53.75 0.2311 53.75 53.627 53.858 0 22 10 3 0 0 0 0.43662 1 29827 29827 19.626 4.7877 1 5426300 28653 6628;16309;16310 19193 19563 33663 33663 0.09871392680270219 KVLEPSETLVV 11 Unmodified _KVLEPSETLVV_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 607.355554 1212.69655 0.20029 0.00012165 0.81746 0.00049649 1.0178 0.00061814 607.3557361860859 54.219 0.096401 53.752 53.687 53.784 -0.46664 0.00083201 0.00085085 NaN 19.626 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 666540 28654 6628;16309;16310 19193 19563 0.09871392680270219 KVLERVNAV 9 Unmodified _KVLERVNAV_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.3158569335938 2 514.316566 1026.61858 -0.16699 -8.5883E-05 0.11634 5.9836E-05 -0.050645 -2.6047E-05 514.3165752021392 23.509 0.23594 23.509 23.387 23.623 0 30 11 4 0 0 0 0.085319 1 11962 11962 36.506 1.5741 1 4438300 28655 1890 19194 19564 33664 33664 0.10633424605566688 KVLERVNAV 9 Unmodified _KVLERVNAV_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3163452148438 2 514.316566 1026.61858 0.42688 0.00021955 0.07004 3.6023E-05 0.49692 0.00025557 514.3165968951199 27.092 0.36502 24.056 23.854 24.219 -3.0365 46 18 3 0 0 0 0.010301 2 14919 14919;15037 79.596 17.024 1 62283000 28656 1890 19194 19564 33665;33666 33665 0.10633424605566688 KVLERVNAV 9 Unmodified _KVLERVNAV_ 0 0 0 ENSG00000100911|ENST00000216802|PSME2;ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF ENSG00000100911|ENST00000216802|PSME2 ENSG00000100911|ENST00000216802|PSME2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.316566 1026.61858 -0.041715 -2.1455E-05 -0.34005 -0.0001749 -0.38177 -0.00019635 514.3161087600578 23.601 0.17225 23.613 23.519 23.691 0.012394 0.052161 -0.00034585 NaN 36.506 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1375400 28657 1890 19194 19564 0.10633424605566688 KVLGIVVGV 9 Unmodified _KVLGIVVGV_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.3029479980469 2 442.302396 882.590239 0.5759 0.00025472 -1.1608 -0.00051344 -0.58493 -0.00025872 442.3018106024102 61.486 0.25581 61.453 61.335 61.59 -0.032787 22 12 2 0 0 0 0.031062 1 33545 33545 54.774 24.549 1 6020000 28658 3829 19195 19565 33667 33667 0.14424726696279322 KVLGIVVGV 9 Unmodified _KVLGIVVGV_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 442.302396 882.590239 0.83014 0.00036718 0.078001 3.45E-05 0.90815 0.00040167 442.30233513515003 67.547 0.16232 61.371 61.255 61.418 -6.1757 -0.040969 0.00025995 NaN 54.774 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 7373000 28659 3829 19195 19565 0.14424726696279322 KVLGTHKG 8 Unmodified _KVLGTHKG_ 0 0 0 nc|ENSG00000100416|O75648-3|TRMU;nc|ENSG00000100416|O75648-4|TRMU;nc|ENSG00000100416|O75648-2|TRMU;ENSG00000100416|ENST00000645190|TRMU nc|ENSG00000100416|O75648-3|TRMU nc|ENSG00000100416|O75648-3|TRMU MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2585754394531 2 420.25852 838.502486 0.82625 0.00034724 -0.58974 -0.00024784 0.23652 9.9398E-05 420.25825934816675 27.115 0.20799 24.078 23.932 24.14 -3.0365 13 10 2 0 0 0 0.46677 1 14993 14993 37.974 3.8716 1 5741600 28660 1820 19196 19566 33668 33668 0.07677525825511111 KVLNKVITV 9 Unmodified _KVLNKVITV_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3395385742188 2 507.33951 1012.66447 0.25293 0.00012832 -0.91008 -0.00046172 -0.65715 -0.0003334 507.3390150094669 34.599 0.12791 34.626 34.54 34.668 0.027401 9 5 2 0 0 0 0.028475 1 18263 18263 56.177 25.541 1 1709200 28661 4782 19197 19567 33669 33669 0.15864069787789958 KVLNKVITV 9 Unmodified _KVLNKVITV_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3390197753906 2 507.33951 1012.66447 0.7909 0.00040126 -0.10983 -5.572E-05 0.68108 0.00034554 507.3393579183587 39.433 0.29182 34.983 34.782 35.073 -4.4509 30 17 2 0 0 0 0.0089732 1 23345 23345 86.332 23.759 1 11009000 28662 4782 19197 19567 33670 33670 0.15864069787789958 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5531921386719 3 367.553603 1099.63898 -0.51948 -0.00019094 -0.0011757 -4.3215E-07 -0.52066 -0.00019137 367.5535581610161 33.685 0.2244 33.685 33.579 33.804 0 21 12 2 0 0 0 0.07916 1 17666 17666 34.932 24.133 1 8315700 28663 3426 19198 19568 33671 33671 0.09314595265368553 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5536193847656 3 367.553603 1099.63898 -0.26876 -9.8782E-05 1.5273 0.00056135 1.2585 0.00046257 367.5540181152676 33.847 0.32038 33.655 33.475 33.795 -0.19131 34 12 4 0 0 0 0.044011 2 17598 17598;17693 37.075 21.336 1 25834000 28664 3426 19198 19568 33672;33673 33672 0.09314595265368553 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.827392578125 2 550.826766 1099.63898 -0.21257 -0.00011709 1.1793 0.00064957 0.96669 0.00053248 550.8275620207197 33.844 0.22319 33.655 33.523 33.747 -0.18869 11 8 2 0 0 0 0.43463 1 17688 17688 10.824 7.2274 1 878010 28665 3426 19198 19568 33674 33674 0.09314595265368553 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.553955078125 3 367.553603 1099.63898 0.0075701 2.7824E-06 -0.077035 -2.8314E-05 -0.069465 -2.5532E-05 367.55343381343897 33.535 0.30836 33.564 33.437 33.745 0.028934 35 13 4 0 0 0 0.094149 1 17622 17622 26.021 9.4548 1 15434000 28666 3426 19198 19568 33675 33675 0.09314595265368553 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5534973144531 3 367.553603 1099.63898 0.88467 0.00032517 -0.16538 -6.0787E-05 0.71929 0.00026438 367.5535324261671 76.945 0.95515 70.769 70.282 71.237 -6.1757 114 52 3 0 0 0 0.028475 4 50324 50100;50215;50324;50442 51.415 30.834 1 25956000 28667 3426 19198 19568 33676;33677;33678;33679 33678 0.09314595265368553 KVLSKEFHL 9 Unmodified _KVLSKEFHL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MSMS AL20221201_MKP_PDAC_01 4 550.82666015625 2 550.826766 1099.63898 NaN NaN NaN NaN NaN NaN NaN 37.657 1 33.288 32.788 33.788 -4.3689 0 0 0 0.049786 1 22126 22126 57.722 13.864 1 28668 3426 19198 19568 33680 33680 0.09314595265368553 KVLVNREAV 9 Unmodified _KVLVNREAV_ 0 0 0 REV__ENST00000547566.5_1_12:54680505-54680764:+|nuORF REV__ENST00000547566.5_1_12:54680505-54680764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8184204101562 2 514.316566 1026.61858 -0.041715 -2.1455E-05 -0.34005 -0.0001749 -0.38177 -0.00019635 514.3161087600578 23.601 0.17225 23.613 23.519 23.691 0.012394 9 7 2 0 0 0 0.46501 1 12061 12061 9.3831 0 1 1375400 + 28669 28673 19199 19569 33681 33681 0.10633424605566688 KVMELLVHL 9 Oxidation (M) _KVM(Oxidation (M))ELLVHL_ KVM(1)ELLVHL KVM(44)ELLVHL 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5507507324219 3 366.551094 1096.63145 0.46231 0.00016946 -0.04569 -1.6748E-05 0.41662 0.00015271 366.55096278502185 53.618 0.29508 53.166 53.005 53.3 -0.45173 35 14 3 0 0 0 0.05483 1 28992 28992 43.772 17.504 1 5827800 28670 4858 19200 19570 33682 33682 881 0.08700119673426343 KVMELLVHL 9 Oxidation (M) _KVM(Oxidation (M))ELLVHL_ KVM(1)ELLVHL KVM(60)ELLVHL 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3263549804688 2 549.323002 1096.63145 0.45982 0.00025259 2.335 0.0012827 2.7948 0.0015352 549.3244431218013 53.627 0.31641 53.175 53.005 53.321 -0.45173 42 15 4 0 0 0 0.023481 1 29011 29011 60.074 30.992 1 13513000 28671 4858 19200 19570 33683 33683 881 0.08700119673426343 KVMELLVHL 9 Oxidation (M) _KVM(Oxidation (M))ELLVHL_ KVM(1)ELLVHL KVM(96)ELLVHL 0 0 1 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3255004882812 2 549.323002 1096.63145 0.018646 1.0243E-05 1.5895 0.00087317 1.6082 0.00088341 549.3242478393336 53.277 0.26361 53.214 53.098 53.361 -0.063423 29 12 3 0 0 0 0.0082485 1 28900 28900 96.285 47.939 1 5961400 28672 4858 19200 19570 33684 33684 881 0.08700119673426343 KVMELLVHL 9 Unmodified _KVMELLVHL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3270263671875 2 541.325545 1080.63654 0.77864 0.0004215 1.2783 0.00069197 2.0569 0.0011135 541.3268230784932 64.542 0.30774 64.531 64.318 64.625 -0.010529 34 15 3 0 0 0 0.020973 1 35320 35320 62.573 26.528 1 4031400 28673 4858 19200 19571 33685 33685 0.09944423536057911 KVMELLVHL 9 Unmodified _KVMELLVHL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3255004882812 2 541.325545 1080.63654 1.2487 0.00067595 -0.84095 -0.00045523 0.40775 0.00022073 541.3251041136375 95.637 0.26318 89.462 89.367 89.63 -6.1757 51 16 4 0 0 0 0.00022959 2 63333 63333;63461 149.99 68.382 1 66700000 28674 4858 19200 19571 33686;33687 33686 0.09944423536057911 KVMELLVHL 9 Unmodified _KVMELLVHL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2199096679688 3 361.219455 1080.63654 2.0556 0.00074253 -0.72168 -0.00026069 1.3339 0.00048184 361.21919386142 95.64 0.26318 89.464 89.367 89.63 -6.1757 39 16 3 0 0 0 0.026094 1 63340 63340 43.772 10.987 1 30205000 28675 4858 19200 19571 33688 33688 0.09944423536057911 KVMHHLVK 8 Unmodified _KVMHHLVK_ 0 0 0 REV__ENSG00000221867|ENST00000370278|MAGEA3 REV__ENSG00000221867|ENST00000370278|MAGEA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2942504882812 2 496.297122 990.579691 -0.4541 -0.00022537 -4.12 -0.0020447 -4.5741 -0.0022701 496.2951652635978 104.51 0.041481 104.46 104.43 104.47 -0.048737 9 5 2 0 0 0 0.80992 1 58031 58031 0.69038 0.088878 1 9109800 + 28676 23905 19201 19572 33689 33689 0.08402420770210028 KVMHHLVK 8 Unmodified _KVMHHLVK_ 0 0 0 REV__ENSG00000221867|ENST00000370278|MAGEA3 REV__ENSG00000221867|ENST00000370278|MAGEA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 496.297122 990.579691 -0.4541 -0.00022537 -4.12 -0.0020447 -4.5741 -0.0022701 496.2951652635978 104.51 0.041481 104.46 104.43 104.47 -0.048737 0 0 NaN 0.69038 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 9109800 + 28677 23905 19201 19572 0.08402420770210028 KVNPLYILGSF 11 Unmodified _KVNPLYILGSF_ 0 0 0 REV__nc|ENSG00000131951|Q6ZRR7|LRRC9 REV__nc|ENSG00000131951|Q6ZRR7|LRRC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8607788085938 2 625.860806 1249.70706 NaN NaN NaN NaN NaN NaN NaN 56.872 1 56.803 56.303 57.303 -0.068737 0 0 0 0.88164 1 30946 30946 8.1555 0.24537 1 + 28678 19821 19202 19573 33690 33690 0.09219420125350553 KVNYGKQNL 9 Unmodified _KVNYGKQNL_ 0 0 0 REV__nc|ENSG00000034152|P46734-2|MAP2K3 REV__nc|ENSG00000034152|P46734-2|MAP2K3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8073120117188 2 532.298373 1062.58219 1.3544 0.00072092 0.84052 0.00044741 2.1949 0.0011683 532.2982729468246 33.912 0.81554 29.927 29.525 30.34 -3.9853 134 45 5 0 0 0 0.30562 1 19275 19275 16.942 0 1 325620000 + 28679 17159 19203 19574 33691 33691 0.05340547708851773 KVPELPLMN 9 Unmodified _KVPELPLMN_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MSMS AL20221201_MKP_PDAC_01 4 520.7960205078125 2 520.794078 1039.5736 NaN NaN NaN NaN NaN NaN NaN 84.447 1 78.271 77.771 78.771 -6.1757 0 0 0 0.41346 1 55554 55554 19.257 3.4098 1 28680 4099 19204 19575 33692 33692 0.05539857748021859 KVQAESFPTPM 11 Unmodified _KVQAESFPTPM_ 0 0 0 REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF REV__ENST00000561477.1_1_16:89758247-89760641:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2084045410156 3 412.209396 1233.60636 NaN NaN NaN NaN NaN NaN NaN 18.633 1 18.633 18.133 19.133 0 0 0 0 0.93933 1 9277 9277 1.2148 0.76031 1 + 28681 23494 19205 19576 33693 33693 -0.0010997991980730148 KVQELQNKGKK 11 Unmodified _KVQELQNKGKK_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7064514160156 3 433.929621 1298.76703 0.27473 0.00011921 -0.10095 -4.3806E-05 0.17378 7.5408E-05 433.92947294936965 33.828 0.22769 33.857 33.745 33.973 0.028934 19 9 3 0 0 0 0.30551 1 17754 17754 1.2148 0 1 1338400 28682 3689 19206 19577 33694 33694 0.12960110788594648 KVQFFIERERD 11 Unmodified _KVQFFIERERD_ 0 0 0 ENSG00000187833|ENST00000409561|C2orf78 ENSG00000187833|ENST00000409561|C2orf78 ENSG00000187833|ENST00000409561|C2orf78 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.9294128417969 3 489.596531 1465.76776 0.32522 0.00015923 -1.6359 -0.00080095 -1.3107 -0.00064172 489.5958255517193 17.08 0.077278 17.085 17.045 17.122 0.0050545 7 5 2 0 0 0 0.74096 1 8609 8609 0.40827 0 1 406440 28683 9600 19207 19578 33695 33695 0.053509054376490894 KVQLVDNVY 9 Unmodified _KVQLVDNVY_ 0 0 0 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 MSMS AL20221201_MKP_PDAC_01 4 359.8704528808594 3 359.86948 1076.58661 NaN NaN NaN NaN NaN NaN NaN 25.654 1 22.703 22.203 23.203 -2.9511 0 0 0 0.6032 1 14062 14062 8.1555 1.0538 1 28684 1048 19208 19579 33696 33696 0.05138012131760661 KVQNYMRPL 9 Unmodified _KVQNYMRPL_ 0 0 0 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.5460510253906 3 383.546343 1147.6172 0.99249 0.00038067 3.4453 0.0013214 4.4378 0.0017021 383.548182096755 39.639 0.39184 35.188 35.028 35.42 -4.4509 50 24 3 0 0 0 0.21367 1 23436 23436 1.0715 0 1 12589000 + 28685 21396 19209 19580 33697 33697 0.04929467245142405 KVRDHMVTL 9 Unmodified _KVRDHMVTL_ 0 0 0 nc|ENSG00000162929|Q6NSI8-3|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;ENSG00000162929|ENST00000402291|SANBR nc|ENSG00000162929|Q6NSI8-3|SANBR nc|ENSG00000162929|Q6NSI8-3|SANBR MSMS AL20221201_MKP_PDAC_01 4 366.8754272460938 3 366.874459 1097.60155 NaN NaN NaN NaN NaN NaN NaN 28.026 1 24.878 24.378 25.378 -3.1482 0 0 0 0.13831 1 15590 15590 29.437 9.0226 1 28686 6932 19210 19581 33698 33698 0.056651807281014044 KVRELELVY 9 Unmodified _KVRELELVY_ 0 0 0 ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.1976623535156 3 383.560646 1147.66011 1.4549 0.00055805 -0.67275 -0.00025804 0.78217 0.00030001 383.5599601419485 48.48 0.19294 43.084 43.01 43.203 -5.3961 18 11 2 0 0 0 0.21493 1 30273 30273 2.4985 0.063701 1 12611000 28687 471 19211 19582 33699 33699 0.09218560574208823 KVREVRAQL 9 Unmodified _KVREVRAQL_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.231689453125 3 366.896252 1097.66693 1.6213 0.00059486 -1.0418 -0.00038224 0.57952 0.00021262 366.8959056472147 19.385 0.24075 16.729 16.624 16.865 -2.6564 45 23 3 0 0 0 0.21589 1 10320 10320 21.59 5.0243 1 12462000 28688 5271 19212 19583 33700 33700 0.1219991824546014 KVRFKKVEF 9 Unmodified _KVRFKKVEF_ 0 0 0 nc|ENSG00000137821|Q8IUZ0-2|LRRC49 nc|ENSG00000137821|Q8IUZ0-2|LRRC49 nc|ENSG00000137821|Q8IUZ0-2|LRRC49 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2374267578125 3 394.244881 1179.71281 NaN NaN NaN NaN NaN NaN NaN 102.47 1 102.42 101.92 102.92 -0.045853 0 0 0 0.85359 1 56917 56917 1.0715 0.83562 1 28689 16222 19213 19584 33701 33701 0.13014563427691428 KVRGISEVL 9 Unmodified _KVRGISEVL_ 0 0 0 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8120422363281 2 500.811116 999.60768 0.95908 0.00048032 0.29149 0.00014598 1.2506 0.0006263 500.8111433596309 40.647 0.40184 36.118 35.904 36.306 -4.5294 42 24 2 0 0 0 0.044011 1 24331 24331 47.749 7.7914 1 16704000 28690 3242 19214 19585 33702 33702 0.10786022231286552 KVRVPRQSL 9 Unmodified _KVRVPRQSL_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5651550292969 3 361.564614 1081.67201 1.8526 0.00066985 -0.70354 -0.00025438 1.1491 0.00041547 361.56439401057963 21.146 0.38484 18.453 18.205 18.59 -2.693 61 21 4 0 0 0 0.42049 2 11253 11253;11362 15.739 5.5881 1 23138000 28691 1447 19215 19586 33703;33704 33703 0.1344422210806897 KVSEKYQSI 9 Unmodified _KVSEKYQSI_ 0 0 0 REV__ENSG00000061794|ENST00000081029|MRPS35 REV__ENSG00000061794|ENST00000081029|MRPS35 MSMS AL20221201_MKP_PDAC_01 4 361.2008972167969 3 361.201118 1080.58152 NaN NaN NaN NaN NaN NaN NaN 96.4 1 90.224 89.724 90.724 -6.1757 0 0 0 0.82283 1 63883 63883 4.897 0.56777 1 + 28692 17334 19216 19587 33705 33705 0.04445708269122406 KVSPMYKSF 9 Unmodified _KVSPMYKSF_ 0 0 0 REV__ENST00000586558.5_1_19:14522263-14523533:-|nuORF REV__ENST00000586558.5_1_19:14522263-14523533:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7843017578125 2 543.786253 1085.55795 -0.20882 -0.00011356 -2.4711 -0.0013437 -2.6799 -0.0014573 543.7848724205323 22.425 0.14162 22.425 22.345 22.486 0 9 6 2 0 0 0 0.57331 1 11413 11413 2.9952 0.69251 1 487130 + 28693 19372 19217 19588 33706 33706 0.018595712309661394 KVSPPGPAL 9 Unmodified _KVSPPGPAL_ 0 0 0 ENSG00000197279|ENST00000683778|ZNF165 ENSG00000197279|ENST00000683778|ZNF165 ENSG00000197279|ENST00000683778|ZNF165 MSMS AL20221201_MKP_PDAC_01 4 433.2615051269531 2 433.260728 864.506903 NaN NaN NaN NaN NaN NaN NaN 39.331 1 34.88 34.38 35.38 -4.4509 0 0 0 0.098163 1 23332 23332 43.858 25.723 1 28694 9936 19218 19589 33707 33707 0.06922990248415317 KVSTIKRHI 9 Unmodified _KVSTIKRHI_ 0 0 0 ENSG00000188070|ENST00000433688|ZFTA ENSG00000188070|ENST00000433688|ZFTA ENSG00000188070|ENST00000433688|ZFTA MSMS AL20221201_MKP_PDAC_01 4 361.2540283203125 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 100.59 1 94.411 93.911 94.911 -6.1757 0 0 0 0.85447 1 67295 67295 0.96228 0 1 28695 9626 19219 19590 33708 33708 0.139651062508392 KVTDIIVSF 9 Unmodified _KVTDIIVSF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.3003234863281 2 511.30005 1020.58555 0.035133 1.7964E-05 0.49873 0.000255 0.53386 0.00027296 511.30006603296937 68.94 0.62799 68.46 68.18 68.808 -0.48071 65 27 4 0 0 0 0.01958 2 37747 37648;37747 63.961 25.785 1 17156000 28696 2308 19220 19591 33709;33710 33710 0.07607797762852897 KVTDIIVSF 9 Unmodified _KVTDIIVSF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3002319335938 2 511.30005 1020.58555 0.83237 0.00042559 -0.99354 -0.000508 -0.16117 -8.2407E-05 511.2991325816078 68.464 0.22459 68.489 68.357 68.582 0.025146 27 10 3 0 0 0 0.029718 1 37580 37580 55.503 27.874 1 7010200 28697 2308 19220 19591 33711 33711 0.07607797762852897 KVTKQVPKRRK 11 Unmodified _KVTKQVPKRRK_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.4498291015625 2 684.45152 1366.88849 NaN NaN NaN NaN NaN NaN NaN 103.7 1 103.65 103.15 104.15 -0.047928 0 0 0 0.94313 1 57589 57589 0.26902 0 1 + 28698 18514 19221 19592 33712 33712 0.21971777941757864 KVTSFVHVY 9 Unmodified _KVTSFVHVY_ 0 0 0 REV__ENSG00000196772|ENST00000641093|OR14A16 REV__ENSG00000196772|ENST00000641093|OR14A16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.534912109375 3 360.53432 1078.58113 -0.036693 -1.3229E-05 1.4619 0.00052707 1.4252 0.00051384 360.53484002964944 15.068 0.13184 15.073 14.996 15.128 0.0057774 11 7 2 0 0 0 0.54444 1 7510 7510 2.7352 0.23671 1 920010 + 28699 23868 19222 19593 33713 33713 0.04498333339961391 KVVALVHAV 9 Unmodified _KVVALVHAV_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.3052673339844 2 468.30547 934.596387 -0.30262 -0.00014172 -0.15201 -7.1186E-05 -0.45463 -0.00021291 468.3054057691568 34.672 0.18986 34.48 34.351 34.541 -0.19131 14 8 2 0 0 0 8.5836E-05 1 18109 18109 153.26 112.81 1 4059900 28700 394 19223 19594 33714 33714 0.12647244927791235 KVVALVHAV 9 Unmodified _KVVALVHAV_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.3056640625 2 468.30547 934.596387 0.072458 3.3932E-05 0.28197 0.00013205 0.35442 0.00016598 468.30561505939676 34.364 0.21331 34.391 34.265 34.478 0.027401 15 9 2 0 0 0 0.023164 1 18117 18117 60.39 35.716 1 1781200 28701 394 19223 19594 33715 33715 0.12647244927791235 KVVALVHAV 9 Unmodified _KVVALVHAV_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.3054504394531 2 468.30547 934.596387 0.45789 0.00021443 -0.33494 -0.00015685 0.12295 5.7578E-05 468.3053056425308 38.824 0.4066 34.373 34.175 34.582 -4.4509 43 25 2 0 0 0 0.0088154 2 22913 22913;23078 106.85 74.729 1 24665000 28702 394 19223 19594 33716;33717 33716 0.12647244927791235 KVVKKAAHKKV 11 Unmodified _KVVKKAAHKKV_ 0 0 0 REV__nc|ENSG00000159164|Q7L0J3-2|SV2A REV__nc|ENSG00000159164|Q7L0J3-2|SV2A MSMS AL20221201_MKP_PDAC_01 4 618.412841796875 2 618.419157 1234.82376 NaN NaN NaN NaN NaN NaN NaN 105.6 1 99.423 98.923 99.923 -6.1757 0 0 0 0.94307 1 70746 70746 0.30703 0 1 + 28703 21463 19224 19595 33718 33718 0.21574203135764947 KVVLEDYLR 9 Unmodified _KVVLEDYLR_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-10|CDH23;nc|ENSG00000107736|Q9H251-7|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8302001953125 2 567.829506 1133.64446 0.81993 0.00046558 0.17405 9.883E-05 0.99398 0.00056441 567.8297721658159 48.948 0.30738 43.552 43.354 43.661 -5.3961 34 18 2 0 0 0 0.13639 1 30581 30581 38.176 3.2435 1 65779000 28704 2512 19225 19596 33719 33719 0.08298274057165145 KVVLHTGK 8 Unmodified _KVVLHTGK_ 0 0 0 ENSG00000130787|ENST00000253083|HIP1R;ENST00000538236.1_1_12:123345166-123345832:+|nuORF ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.9549865722656 2 441.281995 880.549437 NaN NaN NaN NaN NaN NaN NaN 104.46 1 104.41 103.91 104.91 -0.048737 0 0 0 0.97444 1 57996 57996 0.69038 0 1 28705 4262 19226 19597 33720 33720 0.10438385376664883 KVVLKPSNPT 10 Unmodified _KVVLKPSNPT_ 0 0 0 REV__nc|ENSG00000134376|P82279-4|CRB1 REV__nc|ENSG00000134376|P82279-4|CRB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7456665039062 2 541.832049 1081.64954 0.41463 0.00022466 -0.34409 -0.00018644 0.070537 3.8219E-05 541.8319172386471 26.773 0.32329 23.737 23.609 23.932 -3.0365 30 16 3 0 0 0 0.63399 1 14836 14836 9.3831 0 1 10566000 + 28706 19982 19227 19598 33721 33721 0.1119857791979939 KVWGNVVTV 9 Unmodified _KVWGNVVTV_ 0 0 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2926330566406 2 501.292559 1000.57057 1.1108 0.00055684 -0.89414 -0.00044823 0.21666 0.00010861 501.2920775628885 49.873 0.24354 49.824 49.683 49.927 -0.048824 29 11 3 0 0 0 0.022193 1 26937 26937 61.357 15.337 1 3315200 28707 3910 19228 19599 33722 33722 0.07030350685533904 KVWGNVVTV 9 Unmodified _KVWGNVVTV_ 0 0 0 ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR ENSG00000125944|ENST00000302271|HNRNPR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7664489746094 2 501.292559 1000.57057 0.30178 0.00015128 -0.92373 -0.00046306 -0.62195 -0.00031178 501.29258005006915 56.072 0.30769 50.13 49.948 50.256 -5.9418 26 17 2 0 0 0 0.15672 1 35669 35669 20.454 0 1 23310000 28708 3910 19228 19599 33723 33723 0.07030350685533904 KVWTYKSSFM 10 Unmodified _KVWTYKSSFM_ 0 0 0 REV__ENSG00000183607|ENST00000328895|GKN2 REV__ENSG00000183607|ENST00000328895|GKN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 639.3243408203125 2 638.823366 1275.63218 0.50459 0.00032234 -3.7815 -0.0024157 -3.2769 -0.0020934 638.8201051708934 101.72 0.088684 95.546 95.503 95.592 -6.1757 6 5 2 0 0 0 0.23325 1 68291 68291 6.2058 3.4706 1 15617000 + 28709 23358 19229 19600 33724 33724 0.005389143224874715 KVWTYKSSFM 10 Unmodified _KVWTYKSSFM_ 0 0 0 REV__ENSG00000183607|ENST00000328895|GKN2 REV__ENSG00000183607|ENST00000328895|GKN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 638.823366 1275.63218 2.167 0.0013843 -1.0736 -0.00068581 1.0935 0.00069853 638.822371378732 95.372 0.2218 95.376 95.265 95.487 0.004158 -0.085035 0.0010263 NaN 13.042 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1028700 + 28710 23358 19229 19600 0.005389143224874715 KVYHYFEYEYR 11 Unmodified _KVYHYFEYEYR_ 0 0 0 REV__ENSG00000111962|ENST00000367463|UST REV__ENSG00000111962|ENST00000367463|UST MULTI-SECPEP AL20221201_MKP_PDAC_01 4 399.9425048828125 4 399.942496 1595.74088 0.2673 0.00010691 0.60969 0.00024384 0.87699 0.00035075 399.9420646547742 12.021 0.03151 9.5386 9.5278 9.5594 -2.482 8 6 2 0 0 0 0.30599 1 6068 6068 0.08335 0 1 811620 + 28711 18780 19230 19601 33725 33725 -0.033162031735173514 KWAAVAGG 8 Unmodified _KWAAVAGG_ 0 0 0 ENST00000476932.5_1_2:128412197-128421974:-|nuORF ENST00000476932.5_1_2:128412197-128421974:-|nuORF ENST00000476932.5_1_2:128412197-128421974:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2117309570312 2 380.211038 758.407523 0.96967 0.00036868 0.15639 5.946E-05 1.1261 0.00042814 380.21106044339797 46.294 0.50077 41.293 40.972 41.473 -5.0007 70 34 3 0 0 0 0.77907 1 28453 28453 10.183 3.8293 1 52346000 28712 13990 19231 19602 33726 33726 0.018655923543292374 KWAVEGSAYAS 11 Unmodified _KWAVEGSAYAS_ 0 0 0 ENST00000588073.1_1_17:42231773-42239297:+|nuORF ENST00000588073.1_1_17:42231773-42239297:+|nuORF ENST00000588073.1_1_17:42231773-42239297:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1169.128051757812 1 1168.56331 1167.55604 0.99784 0.001166 -1.8958 -0.0022153 -0.89792 -0.0010493 1168.5602158646072 71.755 0.34503 65.579 65.419 65.764 -6.1757 33 18 2 0 0 0 0.046614 1 46828 46828 51.63 9.6743 1 91893000 28713 15643 19232 19603 33727 33727 -0.021037662532762624 KWCELIPGAEF 11 Carbamidomethyl (C) _KWC(Carbamidomethyl (C))ELIPGAEF_ KWC(1)ELIPGAEF KWC(76)ELIPGAEF 0 1 0 ENSG00000151465|ENST00000281141|CDC123;ENST00000498747.1_1_10:12259419-12280480:+|nuORF ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.3318481445312 2 675.331556 1348.64856 1.2 0.00081042 0.84602 0.00057134 2.046 0.0013818 675.3324089216813 94.32 0.52832 88.144 87.898 88.426 -6.1757 64 30 3 0 0 0 0.004841 2 62403 62403;62522 75.571 45.73 1 11937000 28714 6115 19233 19604 33728;33729 33728 608 -0.011820045114291133 KWDALVIKL 9 Unmodified _KWDALVIKL_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3395385742188 2 543.33951 1084.66447 0.58628 0.00031855 -0.69174 -0.00037585 -0.10545 -5.7296E-05 543.3389475533194 68.994 0.2038 69.025 68.908 69.111 0.030914 19 9 3 0 0 0 0.060956 1 37919 37919 42.312 10.007 1 2489400 28715 1382 19234 19605 33730 33730 0.12552069787761866 KWDKVMQELN 10 Unmodified _KWDKVMQELN_ 0 0 0 REV__ENSG00000173145|ENST00000371361|NOC3L REV__ENSG00000173145|ENST00000371361|NOC3L MSMS AL20221201_MKP_PDAC_01 4 430.88818359375 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 16.118 1 13.561 13.061 14.061 -2.557 0 0 0 0.99248 1 8328 8328 0.62683 0 1 + 28716 22705 19235 19606 33731 33731 0.010571113458354375 KWDSNICEL 9 Carbamidomethyl (C) _KWDSNIC(Carbamidomethyl (C))EL_ KWDSNIC(1)EL KWDSNIC(100)EL 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7720336914062 2 582.771331 1163.52811 1.0991 0.00064052 -0.63195 -0.00036828 0.46713 0.00027223 582.7711480235703 55.108 0.64898 49.187 48.858 49.507 -5.9211 128 40 4 0 0 0 0.008513 3 35091 34952;35091;35236 99.799 45.966 1 679120000 28717 8367 19236 19607 33732;33733;33734 33733 810 -0.04711412505048429 KWEDQDIEDDH 11 Unmodified _KWEDQDIEDDH_ 0 0 0 ENSG00000105708|ENST00000344099|ZNF14 ENSG00000105708|ENST00000344099|ZNF14 ENSG00000105708|ENST00000344099|ZNF14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2003479003906 3 477.200394 1428.57935 NaN NaN NaN NaN NaN NaN NaN 2.3047 1 2.2877 1.7877 2.7877 -0.017019 0 0 0 0.9435 1 1177 1177 0 0 1 28718 2357 19237 19608 33735 33735 -0.11779416997296721 KWEEEEME 8 Unmodified _KWEEEEME_ 0 0 0 ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.225830078125 2 555.226422 1108.43829 NaN NaN NaN NaN NaN NaN NaN 2.368 1 2.351 1.851 2.851 -0.017019 0 0 0 0.97444 1 1209 1209 0.69038 0 1 28719 3187 19238 19609 33736 33736 -0.11159086904262949 KWEKELHHL 9 Unmodified _KWEKELHHL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000031900 CON__ENSEMBL:ENSBTAP00000031900 CON__ENSEMBL:ENSBTAP00000031900 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2239685058594 3 407.224257 1218.65094 NaN NaN NaN NaN NaN NaN NaN 41.764 1 41.763 41.263 42.263 -0.0017929 0 0 0 0.73776 1 22336 22336 8.1555 1.0538 1 + 28720 147 19239 19610 33737 33737 0.050362120085537754 KWFESGPLLF 10 Unmodified _KWFESGPLLF_ 0 0 0 ENST00000606994.1_1_5:32174612-32175047:+|nuORF ENST00000606994.1_1_5:32174612-32175047:+|nuORF ENST00000606994.1_1_5:32174612-32175047:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8289794921875 2 612.326599 1222.63865 0.22379 0.00013703 -1.0816 -0.0006623 -0.85782 -0.00052527 612.3250858118507 99.778 0.097366 93.602 93.541 93.638 -6.1757 15 6 3 0 0 0 0.021614 1 66566 66566 74.2 41.894 1 37558000 28721 15857 19240 19611 33738 33738 0.03623175545521917 KWFFQKLRF 9 Unmodified _KWFFQKLRF_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.9167785644531 3 433.916876 1298.7288 0.43853 0.00019029 -0.095543 -4.1458E-05 0.34299 0.00014883 433.91685779464797 61.612 0.23499 61.579 61.456 61.691 -0.032787 27 11 3 0 0 0 0.010818 1 33634 33634 70.332 63.709 1 7183700 28722 4328 19241 19612 33739 33739 0.09138269664572363 KWFFQKLRF 9 Unmodified _KWFFQKLRF_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.91748046875 3 433.916876 1298.7288 1.6709 0.00072501 -0.48852 -0.00021198 1.1823 0.00051303 433.9166249629006 98.231 0.25156 92.055 91.939 92.19 -6.1757 55 16 5 0 0 0 0.008678 1 65100 65100 70.332 70.332 1 282040000 28723 4328 19241 19612 33740 33740 0.09138269664572363 KWFFQKLRF 9 Unmodified _KWFFQKLRF_ 0 0 0 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 ENSG00000131469|ENST00000253788|RPL27 MSMS AL20221201_MKP_PDAC_01 4 650.3719482421875 2 650.371675 1298.7288 NaN NaN NaN NaN NaN NaN NaN 98.277 1 92.101 91.601 92.601 -6.1757 0 0 0 0.0013332 1 65170 65170 131.27 100.63 1 28724 4328 19241 19612 33741 33741 0.09138269664572363 KWFKVHGDHS 10 Unmodified _KWFKVHGDHS_ 0 0 0 REV__ENSG00000113593|ENST00000261308|PPWD1 REV__ENSG00000113593|ENST00000261308|PPWD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2124328613281 3 414.21224 1239.61489 NaN NaN NaN NaN NaN NaN NaN 56.752 1 56.752 56.252 57.252 0 0 0 0 0.99091 1 31568 31568 0.69767 0 1 + 28725 18877 19242 19613 33742 33742 0.004667548317002002 KWFNVRNGYGF 11 Unmodified _KWFNVRNGYGF_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2;ENST00000571834.5_1_17:7195323-7196846:-|nuORF;ENST00000570627.1_1_17:7195008-7196846:-|nuORF;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1 ENSG00000006047|ENST00000007699|YBX2;ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.569091796875 3 463.235045 1386.6833 0.32227 0.00014929 -0.28658 -0.00013276 0.035686 1.6531E-05 463.5692330468249 54.629 0.24085 54.562 54.463 54.704 -0.066936 29 11 3 0 0 0 0.631 1 29667 29667 9.7643 5.6476 1 7666300 28726 921;324 19243 19614 33743 33743 0.005429994115502268 KWFNVRNGYGF 11 Unmodified _KWFNVRNGYGF_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2;ENST00000571834.5_1_17:7195323-7196846:-|nuORF;ENST00000570627.1_1_17:7195008-7196846:-|nuORF;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1 ENSG00000006047|ENST00000007699|YBX2;ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.233642578125 3 463.235045 1386.6833 1.0779 0.0004993 -1.093 -0.00050631 -0.015141 -7.0137E-06 463.23397508477876 87.117 0.91832 80.942 80.303 81.221 -6.1757 78 49 3 0 0 0 0.67037 1 57322 57322 7.0371 2.3212 1 26290000 28727 921;324 19243 19614 33744 33744 0.005429994115502268 KWFNVRNGYGF 11 Unmodified _KWFNVRNGYGF_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2;ENST00000571834.5_1_17:7195323-7196846:-|nuORF;ENST00000570627.1_1_17:7195008-7196846:-|nuORF;ENST00000566722.1_1_16:31580383-31580761:-|nuORF;nc|ENSG00000060138|P16989-2|YBX3;nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3;ENSG00000065978|ENST00000321358|YBX1 ENSG00000006047|ENST00000007699|YBX2;ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.851806640625 2 694.348929 1386.6833 0.5964 0.00041411 -0.79999 -0.00055547 -0.20359 -0.00014136 694.8498278091097 87.072 0.23017 80.896 80.806 81.036 -6.1757 16 12 2 0 0 0 0.00064514 1 57390 57390 106.94 64.985 1 12853000 28728 921;324 19243 19614 33745 33745 0.005429994115502268 KWFPELPLL 9 Unmodified _KWFPELPLL_ 0 0 0 nc|ENSG00000196335|Q9BXU1-3|STK31;nc|ENSG00000196335|Q9BXU1-2|STK31;ENSG00000196335|ENST00000355870|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8323364257812 2 571.83406 1141.65357 0.45899 0.00026246 -2.8423 -0.0016253 -2.3833 -0.0013629 571.8323578472014 90.207 0.39281 90.249 90.131 90.524 0.042175 19 13 2 0 0 0 0.070838 1 50196 50196 39.957 5.8549 1 8657900 28729 9799 19244 19615 33746 33746 0.08840667413528536 KWFTDTSIILF 11 Unmodified _KWFTDTSIILF_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENST00000564798.2_2_16:56374475-56377859:+|nuORF;nc|ENSG00000087258|P09471-2|GNAO1 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000087258|P09471-2|GNAO1 nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.8716430664062 2 685.871371 1369.72819 1.4516 0.00099559 -0.64702 -0.00044377 0.80454 0.00055181 686.3727300263612 100.77 0.10989 94.599 94.541 94.651 -6.1757 11 7 2 0 0 0 0.16515 1 67508 67508 34.932 5.0915 1 17321000 28730 16131;16062 19245 19616 33747 33747 0.05811385434230942 KWFTETSIILF 11 Unmodified _KWFTETSIILF_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.8790893554688 2 692.879196 1383.74384 2.3991 0.0016623 -0.99411 -0.0006888 1.405 0.0009735 692.8790790302901 96.224 0.25438 96.217 96.134 96.388 -0.0070114 14 8 2 0 0 0 0.5229 1 53502 53502 15.248 5.8654 1 2280400 28731 891 19246 19617 33748 33748 0.06731671951297358 KWFTETSIILF 11 Unmodified _KWFTETSIILF_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.8797607421875 2 692.879196 1383.74384 0.31363 0.00021731 0.25657 0.00017777 0.5702 0.00039508 692.8795390555077 100.68 0.083801 94.509 94.472 94.556 -6.1757 10 5 2 0 0 0 0.020698 1 67415 67415 57.249 35.712 1 25852000 28732 891 19246 19617 33749 33749 0.06731671951297358 KWGRKVQLVQA 11 Unmodified _KWGRKVQLVQA_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.894287109375 2 656.896046 1311.77754 NaN NaN NaN NaN NaN NaN NaN 83.574 1 83.574 83.074 84.074 0 0 0 0 0.94307 1 46347 46347 0.30703 0 1 + 28733 24460 19247 19618 33750 33750 0.13412138233684345 KWGWALAL 8 Unmodified _KWGWALAL_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7705078125 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 4.7427 1 4.6698 4.1698 5.1698 -0.072869 0 0 0 0.97444 1 2344 2344 0 0 1 28734 253 19248 19619 33751 33751 0.05395000347914447 KWGWALAL 8 Unmodified _KWGWALAL_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7695617675781 2 472.771263 943.527973 NaN NaN NaN NaN NaN NaN NaN 13.741 1 13.748 13.248 14.248 0.0073986 0 0 0 0.97444 1 6781 6781 0 0 1 28735 253 19248 19619 33752 33752 0.05395000347914447 KWHFVQCRLEF 11 Unmodified _KWHFVQCRLEF_ 0 0 0 ENST00000357365.7_2_9:139296512-139296737:-|nuORF ENST00000357365.7_2_9:139296512-139296737:-|nuORF ENST00000357365.7_2_9:139296512-139296737:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.5904235839844 3 498.255451 1491.74452 0.80053 0.00039887 1.0131 0.0005048 1.8137 0.00090367 498.5902500122386 57.007 0.1957 56.938 56.839 57.034 -0.068741 23 9 3 0 0 0 0.69509 1 31009 31009 4.7159 1.8726 1 9450900 28736 12111 19249 19620 33753 33753 0.018321881193514855 KWHFVQCRLEF 11 Unmodified _KWHFVQCRLEF_ 0 0 0 ENST00000357365.7_2_9:139296512-139296737:-|nuORF ENST00000357365.7_2_9:139296512-139296737:-|nuORF ENST00000357365.7_2_9:139296512-139296737:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 498.255451 1491.74452 0.38956 0.0001941 0.29681 0.00014789 0.68637 0.00034199 498.5903880271082 57.448 0.1475 56.959 56.836 56.984 -0.48974 0.010359 -0.00099836 NaN 4.7159 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1574700 28737 12111 19249 19620 0.018321881193514855 KWHGLFSRL 9 Unmodified _KWHGLFSRL_ 0 0 0 REV__ENST00000373644.4_1_10:70332714-70332792:+|nuORF REV__ENST00000373644.4_1_10:70332714-70332792:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2457885742188 3 381.885576 1142.6349 0.59128 0.0002258 0.10484 4.0035E-05 0.69611 0.00026584 381.8855553971995 58.503 0.19347 58.442 58.353 58.546 -0.060719 13 9 2 0 0 0 0.18735 1 31901 31901 13.615 7.423 1 1661800 + 28738 26154 19250 19621 33754 33754 0.0692855056231565 KWIHKIILT 9 Unmodified _KWIHKIILT_ 0 0 0 nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF nc|ENSG00000019991|P14210-3|HGF nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5819396972656 3 384.581493 1150.72265 -0.26129 -0.00010049 1.5384 0.00059163 1.2771 0.00049114 384.5819713491949 36.314 0.43509 36.339 36.187 36.622 0.024971 57 19 4 0 0 0 0.59218 1 19225 19225 2.4985 1.8717 1 12942000 28739 518 19251 19622 33755 33755 0.15331751433086538 KWITQVSPL 9 Unmodified _KWITQVSPL_ 0 0 0 REV__nc|ENSG00000105971|P51636-2|CAV2 REV__nc|ENSG00000105971|P51636-2|CAV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8782958984375 3 357.878087 1070.61243 -0.27715 -9.9187E-05 1.0145 0.00036306 0.73732 0.00026387 357.87837573560694 33.398 0.35738 33.238 33.078 33.436 -0.15918 39 14 4 0 0 0 0.41742 1 17419 17419 7.609 2.3121 1 17345000 + 28740 18478 19252 19623 33756 33756 0.07994906374028687 KWKATRQK 8 Unmodified _KWKATRQK_ 0 0 0 ENST00000409157.5_1_2:201371708-201374747:-|nuORF ENST00000409157.5_1_2:201371708-201374747:-|nuORF ENST00000409157.5_1_2:201371708-201374747:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8145751953125 2 523.3169 1044.61925 -0.066884 -3.5001E-05 -0.47602 -0.00024911 -0.54291 -0.00028411 523.316997212659 37.935 0.18833 37.952 37.859 38.048 0.01704 15 8 2 0 0 0 8.7369 1 20130 20130 2.3027 0.24298 1 2409600 28741 12954 19253 19624 33757 33757 0.0987226404527064 KWKKFVRRKKK 11 Unmodified _KWKKFVRRKKK_ 0 0 0 ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 766.509033203125 2 766.506629 1530.99871 NaN NaN NaN NaN NaN NaN NaN 106.98 1 106.93 106.43 107.43 -0.047699 0 0 0 0.9435 1 59284 59284 0 0 1 28742 13219 19254 19625 33758 33758 0.2544462300079431 KWLAKRDHL 9 Unmodified _KWLAKRDHL_ 0 0 0 REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5646057128906 3 389.564614 1165.67201 -0.21677 -8.4445E-05 -0.38137 -0.00014857 -0.59814 -0.00023301 389.89872157197897 32.463 0.24936 32.493 32.341 32.591 0.029747 17 9 2 0 0 0 0.45045 1 17088 17088 6.6304 0 1 1780400 + 28743 25151 19255 19626 33759 33759 0.0958022210809304 KWLAKRDHL 9 Unmodified _KWLAKRDHL_ 0 0 0 REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF REV__ENST00000272793.9_1_2:170814982-170843277:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.564614 1165.67201 -0.21677 -8.4445E-05 -0.38137 -0.00014857 -0.59814 -0.00023301 389.89872157197897 32.463 0.24936 32.493 32.341 32.591 0.029747 0 0 NaN 6.6304 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1780400 + 28744 25151 19255 19626 0.0958022210809304 KWLDSPLAF 9 Unmodified _KWLDSPLAF_ 0 0 0 ENST00000398341.7_1_21:43938514-43945908:+|nuORF ENST00000398341.7_1_21:43938514-43945908:+|nuORF ENST00000398341.7_1_21:43938514-43945908:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7922973632812 2 538.792392 1075.57023 NaN NaN NaN NaN NaN NaN NaN 77.66 1 77.711 77.211 78.211 0.050369 0 0 0 0.091025 1 42868 42868 45.7 7.524 1 28745 12848 19256 19627 33760 33760 0.035469309656718906 KWLDSPLAF 9 Unmodified _KWLDSPLAF_ 0 0 0 ENST00000398341.7_1_21:43938514-43945908:+|nuORF ENST00000398341.7_1_21:43938514-43945908:+|nuORF ENST00000398341.7_1_21:43938514-43945908:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.79296875 2 538.792392 1075.57023 1.1785 0.00063496 0.099012 5.3347E-05 1.2775 0.00068831 538.7922717467478 97.749 0.33141 91.573 91.384 91.716 -6.1757 39 21 2 0 0 0 0.078314 1 64793 64793 38.176 9.6887 1 166090000 28746 12848 19256 19627 33761 33761 0.035469309656718906 KWLEPLKNLRF 11 Unmodified _KWLEPLKNLRF_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.9544372558594 3 481.953878 1442.8398 0.38966 0.0001878 0.00081487 3.9273E-07 0.39048 0.00018819 481.9538400819035 62.729 0.30632 62.707 62.525 62.832 -0.021614 36 15 3 0 0 0 6.8024E-11 1 34263 34263 120.54 98.744 1 16172000 28747 7270 19257 19628 33762 33762 0.13609864582008413 KWLEPLKNLRF 11 Unmodified _KWLEPLKNLRF_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.9550476074219 3 481.953878 1442.8398 1.5341 0.00073934 0.026797 1.2915E-05 1.5608 0.00075226 481.95379287565885 97.518 0.1814 91.342 91.24 91.421 -6.1757 30 9 4 0 0 0 6.3482E-07 1 64597 64597 104.94 77.855 1 65913000 28748 7270 19257 19628 33763 33763 0.13609864582008413 KWLEPLKNLRF 11 Unmodified _KWLEPLKNLRF_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.9678955078125 4 361.717228 1442.8398 2.1189 0.00076645 -0.44159 -0.00015973 1.6773 0.00060672 361.7169326234569 97.521 0.14186 91.346 91.261 91.403 -6.1757 12 7 3 0 0 0 0.17474 1 64659 64659 33.821 27.953 1 12254000 28749 7270 19257 19628 33764 33764 0.13609864582008413 KWLGCWHHLC 10 Unmodified _KWLGCWHHLC_ 0 0 0 ENST00000480841.5_1_7:107333407-107335121:+|nuORF ENST00000480841.5_1_7:107333407-107335121:+|nuORF ENST00000480841.5_1_7:107333407-107335121:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2044982910156 3 428.203922 1281.58994 NaN NaN NaN NaN NaN NaN NaN 15.215 1 15.201 14.701 15.701 -0.014067 0 0 0 1.0024 1 7457 7457 0.13989 0.017027 1 28750 14065 19258 19629 33765 33765 -0.03959339566881681 KWLGGHLSL 9 Unmodified _KWLGGHLSL_ 0 0 0 REV__ENST00000302079.10_2_18:10794839-10794998:-|nuORF REV__ENST00000302079.10_2_18:10794839-10794998:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7937927246094 2 505.792727 1009.5709 1.0819 0.00054722 0.59544 0.00030117 1.6773 0.00084838 505.79316017281553 91.788 0.60169 85.613 85.252 85.853 -6.1757 79 33 3 0 0 0 0.042911 1 60659 60659 48.346 0 1 37822000 + 28751 25327 19259 19630 33766 33766 0.06649770405374511 KWLHELRKR 9 Unmodified _KWLHELRKR_ 0 0 0 REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1 REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1 MSMS AL20221201_MKP_PDAC_01 4 422.5925903320312 3 422.591163 1264.75166 NaN NaN NaN NaN NaN NaN NaN 81.024 1 74.849 74.349 75.349 -6.1757 0 0 0 0.84211 1 53164 53164 2.4985 0.24576 1 + 28752 22180 19260 19631 33767 33767 0.12987288782073847 KWLISPVKI 9 Unmodified _KWLISPVKI_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3511962890625 2 542.349877 1082.6852 0.34939 0.00018949 0.75771 0.00041094 1.1071 0.00060044 542.3506759145283 92.824 0.19457 86.649 86.56 86.754 -6.1757 18 12 2 0 0 0 0.020316 1 61403 61403 63.227 34.733 1 20278000 28753 3713 19261 19632 33768 33768 0.1471666016745985 KWLKKAAR 8 Unmodified _KWLKKAAR_ 0 0 0 REV__nc|ENSG00000159023|P11171-6|EPB41 REV__nc|ENSG00000159023|P11171-6|EPB41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8269958496094 2 500.824361 999.634169 1.701 0.00085192 0.0024376 1.2208E-06 1.7035 0.00085314 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.80992 2 72850 72850;73061 0.69038 0.16561 1 7573500 + 28754 21455 19262 19633 33769;33770 33769 0.13433755913251844 KWLLYPTEI 9 Unmodified _KWLLYPTEI_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8287353515625 2 581.828975 1161.6434 -0.62271 -0.00036231 -1.3848 -0.00080571 -2.0075 -0.001168 581.8289652201827 78.123 0.80692 77.641 77.491 78.298 -0.4826 97 40 4 0 0 0 0.15471 1 42735 42735 27.629 12.791 1 5373100 28755 319 19263 19634 33771 33771 0.0690405968828145 KWLLYPTEI 9 Unmodified _KWLLYPTEI_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3305053710938 2 581.828975 1161.6434 0.65175 0.00037921 -0.82046 -0.00047737 -0.1687 -9.8157E-05 581.8289971153379 77.516 0.97544 77.566 77.272 78.247 0.05011 103 40 5 0 0 0 0.010611 2 42734 42734;42842 78.728 58.274 1 33118000 28756 319 19263 19634 33772;33773 33772 0.0690405968828145 KWLLYPTEI 9 Unmodified _KWLLYPTEI_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.830078125 2 581.828975 1161.6434 1.4547 0.00084638 0.46542 0.0002708 1.9201 0.0011172 581.8291981710958 97.416 0.41022 91.24 90.974 91.384 -6.1757 66 22 4 0 0 0 0.013041 2 64614 64493;64614 71.922 46.523 1 194670000 28757 319 19263 19634 33774;33775 33775 0.0690405968828145 KWLSLIHN 8 Unmodified _KWLSLIHN_ 0 0 0 REV__ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant REV__ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.79296875 2 505.792727 1009.5709 0.41031 0.00020753 -1.1454 -0.00057933 -0.73508 -0.0003718 505.79218947260716 62.238 0.3781 62.205 62.004 62.382 -0.032787 35 19 2 0 0 0 0.42423 1 33955 33955 42.095 0 1 11249000 + 28758 16705 19264 19635 33776 33776 0.06649770405363142 KWLTKSFHF 9 Unmodified _KWLTKSFHF_ 0 0 0 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.552734375 3 398.553715 1192.63931 0.95616 0.00038108 -0.41553 -0.00016561 0.54063 0.00021547 398.5534061783653 46.495 0.30763 46.462 46.329 46.637 -0.033417 23 14 2 0 0 0 0.076472 1 25011 25011 38.615 31.984 1 5297700 28759 1293 19265 19636 33777 33777 0.0507001498522186 KWLTKSFHF 9 Unmodified _KWLTKSFHF_ 0 0 0 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2 nc|ENSG00000080189|Q9NQQ7-2|SLC35C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5548095703125 3 398.553715 1192.63931 1.0369 0.00041325 0.24407 9.7277E-05 1.2809 0.00051053 398.5538738461932 90.433 0.24457 84.257 84.127 84.372 -6.1757 25 14 2 0 0 0 0.060956 1 59707 59707 42.312 31.414 1 14951000 28760 1293 19265 19636 33778 33778 0.0507001498522186 KWMGIAFRI 9 Unmodified _KWMGIAFRI_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5480041503906 3 374.547795 1120.62156 1.7266 0.00064671 -0.62129 -0.0002327 1.1054 0.00041401 374.547431766911 96.272 0.35806 90.096 89.862 90.22 -6.1757 36 21 3 0 0 0 0.05447 1 63810 63810 33.445 25.836 1 15031000 28761 2302 19266 19637 33779 33779 0.06606976458715508 KWNERVSCM 9 Unmodified _KWNERVSCM_ 0 0 0 REV__ENST00000428149.6_1_11:107375451-107375496:-|nuORF REV__ENST00000428149.6_1_11:107375451-107375496:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2709350585938 2 576.768068 1151.52158 0.46181 0.00026636 2.8629 0.0016512 3.3247 0.0019176 577.2709913008846 43.813 0.10807 43.797 43.737 43.845 -0.015667 5 4 2 0 0 0 0.16418 1 23497 23497 25.399 10.561 1 9663800 + 28762 26932 19267 19638 33780 33780 -0.048116289373865584 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7860717773438 2 545.787641 1089.56073 NaN NaN NaN NaN NaN NaN NaN 56.262 1 55.776 55.276 56.276 -0.48554 0 0 0 0.016215 1 30543 30543 72.968 47.569 1 28763 2089 19268 19639 33781 33781 0.019531626801381208 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.78759765625 2 545.787641 1089.56073 -0.42043 -0.00022946 0.42997 0.00023467 0.0095413 5.2075E-06 545.7879721354888 55.925 0.35103 55.856 55.685 56.036 -0.068737 61 18 4 0 0 0 0.051223 2 30368 30368;30470 57.722 21.595 1 157470000 28764 2089 19268 19639 33782;33783 33782 0.019531626801381208 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7876586914062 2 545.787641 1089.56073 0.63959 0.00034908 -1.1766 -0.0006422 -0.53705 -0.00029312 545.7871562716558 61.886 0.78618 55.71 55.424 56.21 -6.1757 125 43 6 0 0 0 0.11824 3 39921 39792;39921;40049 43.772 16.332 1 569010000 28765 2089 19268 19639 33784;33785;33786 33785 0.019531626801381208 KWNPTAGVAF 10 Unmodified _KWNPTAGVAF_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MSMS AL20221201_MKP_PDAC_01 4 545.7865600585938 2 545.787641 1089.56073 NaN NaN NaN NaN NaN NaN NaN 62.615 1 56.439 55.939 56.939 -6.1757 0 0 0 0.42631 1 40410 40410 29.841 1.6674 1 28766 2089 19268 19639 33787 33787 0.019531626801381208 KWNWSNRF 8 Unmodified _KWNWSNRF_ 0 0 0 REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5115051269531 3 379.857797 1136.55156 -0.78777 -0.00029924 0.79433 0.00030173 0.0065655 2.4939E-06 379.85803843669146 28.195 0.22146 28.195 28.09 28.311 0 27 10 4 0 0 0 8.7369 1 14616 14616 1.6526 0 1 3245700 + 28767 26952 19269 19640 33788 33788 -0.011251858855302999 KWPDRITLL 9 Unmodified _KWPDRITLL_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3394165039062 2 571.340041 1140.66553 0.27524 0.00015725 -0.56785 -0.00032443 -0.29261 -0.00016718 571.3396649976243 62.251 0.41766 62.219 61.985 62.402 -0.032787 38 21 2 0 0 0 0.033587 1 34008 34008 41.84 0 1 22339000 28768 3435 19270 19641 33789 33789 0.10082284156692367 KWPDRITLL 9 Unmodified _KWPDRITLL_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2288208007812 3 381.229119 1140.66553 0.26895 0.00010253 -0.72245 -0.00027542 -0.4535 -0.00017289 381.2287601676217 62.229 0.51123 62.196 61.926 62.438 -0.032787 63 26 3 0 0 0 0.11784 1 34024 34024 31.268 7.4786 1 23708000 28769 3435 19270 19641 33790 33790 0.10082284156692367 KWPDRITLL 9 Unmodified _KWPDRITLL_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.2294921875 3 381.229119 1140.66553 1.5733 0.00059979 -0.49113 -0.00018723 1.0822 0.00041256 381.2288717025284 91.783 0.74919 85.607 85.188 85.937 -6.1757 109 42 4 0 0 0 0.11784 3 60648 60527;60648;60775 31.268 7.4786 1 78299000 28770 3435 19270 19641 33791;33792;33793 33792 0.10082284156692367 KWPDRITLL 9 Unmodified _KWPDRITLL_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MSMS AL20221201_MKP_PDAC_01 4 571.3405151367188 2 571.340041 1140.66553 NaN NaN NaN NaN NaN NaN NaN 91.962 1 85.786 85.286 86.286 -6.1757 0 0 0 0.061499 1 60800 60800 57.722 7.789 1 28771 3435 19270 19641 33794 33794 0.10082284156692367 KWPDVCKLKF 10 Carbamidomethyl (C) _KWPDVC(Carbamidomethyl (C))KLKF_ KWPDVC(1)KLKF KWPDVC(96)KLKF 0 1 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.9102172851562 3 440.909281 1319.70601 0.35629 0.00015709 0.96924 0.00042735 1.3255 0.00058444 440.9094287439404 84.733 0.44733 78.558 78.242 78.689 -6.1757 45 25 2 0 0 0 0.0057754 2 55744 55612;55744 96.24 85.825 1 28093000 28772 8186 19271 19642 33795;33796 33796 788 0.05894882484790287 KWPETPLLL 9 Unmodified _KWPETPLLL_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8246459960938 2 548.823692 1095.63283 1.484 0.00081447 0.36861 0.0002023 1.8526 0.0010168 548.8236411790749 98.228 0.20885 92.052 91.939 92.148 -6.1757 33 13 3 0 0 0 0.085319 1 65166 65166 39.957 1.9833 1 42913000 28773 2056 19272 19643 33797 33797 0.08884077033872018 KWPKIKIRHLK 11 Unmodified _KWPKIKIRHLK_ 0 0 0 REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 724.3065185546875 2 723.974631 1445.93471 NaN NaN NaN NaN NaN NaN NaN 21.361 1 21.39 20.89 21.89 0.028357 0 0 0 0.9435 1 10837 10837 0 0 1 + 28774 26132 19273 19644 33798 33798 0.2295784284385718 KWQMHDSG 8 Unmodified _KWQMHDSG_ 0 0 0 ENSG00000198948|ENST00000361618|MFAP3L ENSG00000198948|ENST00000361618|MFAP3L ENSG00000198948|ENST00000361618|MFAP3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7200317382812 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 6.2209 1 6.1363 5.6363 6.6363 -0.08463 0 0 0 0.97444 1 3071 3071 0.69038 0.088878 1 28775 10208 19274 19645 33799 33799 -0.07096489190928423 KWRDYDRY 8 Unmodified _KWRDYDRY_ 0 0 0 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2293701171875 3 401.196478 1200.56761 -0.09267 -3.7179E-05 -1.5814 -0.00063444 -1.674 -0.00067162 401.1954876794565 33.704 0.23337 33.733 33.604 33.837 0.028934 29 9 4 0 0 0 8.7369 1 17799 17799 1.8442 0 1 5673900 28776 1575 19275 19646 33800 33800 -0.024655244392988607 KWRELDQWR 9 Unmodified _KWRELDQWR_ 0 0 0 ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.3472290039062 2 658.846553 1315.67855 0.45007 0.00029652 -2.0553 -0.0013541 -1.6052 -0.0010576 658.8456994044847 92.589 0.37529 92.108 91.858 92.233 -0.48092 37 17 3 0 0 0 0.59532 1 50545 50545 1.6526 0.17072 1 1117000 28777 6148 19276 19647 33801 33801 0.03334115268785354 KWREVSHTF 9 Unmodified _KWREVSHTF_ 0 0 0 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2082824707031 3 397.208607 1188.60399 0.61482 0.00024421 -0.18624 -7.3978E-05 0.42857 0.00017023 397.20855126339484 27.399 0.64576 24.362 23.873 24.519 -3.0365 48 32 3 0 0 0 0.017075 2 15126 15126;15254 61.09 43.647 1 37224000 28778 4460 19277 19648 33802;33803 33802 0.01723352457429428 KWREVSHTF 9 Unmodified _KWREVSHTF_ 0 0 0 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 397.208607 1188.60399 0.03736 1.484E-05 0.21826 8.6694E-05 0.25562 0.00010153 397.20868990751933 24.158 0.20189 24.179 24.063 24.265 0.021185 -0.091536 0.00029573 NaN 61.09 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 8643900 28779 4460 19277 19648 0.01723352457429428 KWRKFWRKSKR 11 Unmodified _KWRKFWRKSKR_ 0 0 0 ENST00000315183.11_2_16:24801717-24801792:+|nuORF ENST00000315183.11_2_16:24801717-24801792:+|nuORF ENST00000315183.11_2_16:24801717-24801792:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 803.4849853515625 2 803.483686 1604.95282 NaN NaN NaN NaN NaN NaN NaN 100.49 1 94.31 93.81 94.81 -6.1757 0 0 0 0.94184 1 67199 67199 1.1933 0.84271 1 28780 11728 19278 19649 33804 33804 0.17453977818558997 KWRQWFHRDKL 11 Unmodified _KWRQWFHRDKL_ 0 0 0 REV__ENST00000532627.5_1_6:26365525-26369063:+|nuORF REV__ENST00000532627.5_1_6:26365525-26369063:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.4371948242188 2 800.436401 1598.85825 NaN NaN NaN NaN NaN NaN NaN 94.813 1 88.637 88.137 89.137 -6.1757 0 0 0 0.94165 1 62802 62802 1.3295 0.9789 1 + 28781 28468 19279 19650 33805 33805 0.08277419276578257 KWSHKGII 8 Unmodified _KWSHKGII_ 0 0 0 REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7877807617188 2 484.787444 967.560336 0.51733 0.0002508 0.68789 0.00033348 1.2052 0.00058427 484.7876776514257 36.203 0.21559 36.203 36.095 36.311 0 24 10 3 0 0 0 0.80311 1 19172 19172 4.756 0 1 12189000 + 28782 26887 19280 19651 33806 33806 0.07525787750955715 KWSHKGII 8 Unmodified _KWSHKGII_ 0 0 0 REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7894897460938 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 39.938 1 39.943 39.443 40.443 0.0050545 0 0 0 0.97444 1 21284 21284 4.756 0 1 + 28783 26887 19280 19651 33807 33807 0.07525787750955715 KWSHKGII 8 Unmodified _KWSHKGII_ 0 0 0 REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.787444 967.560336 -0.3262 -0.00015814 1.4011 0.00067923 1.0749 0.00052109 484.78803488926343 36.545 0.1425 36.295 36.193 36.336 -0.2497 -0.023507 -0.00018279 NaN 4.756 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1726700 + 28784 26887 19280 19651 0.07525787750955715 KWSHKGII 8 Unmodified _KWSHKGII_ 0 0 0 REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF REV__ENST00000425128.6_1_3:27414695-27414764:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 484.787444 967.560336 -0.01856 -8.9976E-06 1.8332 0.00088871 1.8146 0.00087971 484.7882256034152 36.134 0.38488 36.159 35.99 36.375 0.024967 -0.15958 0.00023617 NaN 4.756 51 16 4 NaN NaN NaN NaN 0 NaN NaN 0 107990000 + 28785 26887 19280 19651 0.07525787750955715 KWSKKFFSF 9 Unmodified _KWSKKFFSF_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF nc|ENSG00000071054|O95819-4|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2231140136719 3 402.221965 1203.64407 0.31022 0.00012478 0.78908 0.00031738 1.0993 0.00044216 402.22244273717786 93.058 0.16154 86.882 86.77 86.932 -6.1757 14 9 2 0 0 0 0.35911 1 61558 61558 14.218 6.6092 1 21427000 28786 1049 19281 19652 33808 33808 0.05038899127998775 KWSKKFFSF 9 Unmodified _KWSKKFFSF_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000476609.1_1_2:102441885-102476398:+|nuORF nc|ENSG00000071054|O95819-4|MAP4K4 nc|ENSG00000071054|O95819-4|MAP4K4 MSMS AL20221201_MKP_PDAC_01 4 602.8285522460938 2 602.829309 1203.64407 NaN NaN NaN NaN NaN NaN NaN 93.082 1 86.906 86.406 87.406 -6.1757 0 0 0 0.1598 1 61588 61588 35.612 16.25 1 28787 1049 19281 19652 33809 33809 0.05038899127998775 KWSNKQLF 8 Unmodified _KWSNKQLF_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2946166992188 2 525.790184 1049.56581 1.2723 0.00066898 2.0565 0.0010813 3.3288 0.0017503 525.7897233743028 94.177 0.51118 88.001 87.788 88.299 -6.1757 70 29 3 0 0 0 0.70102 1 62302 62302 21.747 4.8044 1 37590000 28788 3039 19282 19653 33810 33810 0.04301466542756316 KWSNNFIRS 9 Unmodified _KWSNNFIRS_ 0 0 0 ENSG00000173464|ENST00000553849|RNASE11 ENSG00000173464|ENST00000553849|RNASE11 ENSG00000173464|ENST00000553849|RNASE11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5823059082031 3 384.536724 1150.58834 -0.08974 -3.4508E-05 -1.441 -0.00055412 -1.5307 -0.00058862 384.53595997507045 32.956 0.27617 32.986 32.842 33.118 0.029743 20 11 2 0 0 0 0.21834 1 17396 17396 0.96228 0 1 1453600 28789 8328 19283 19654 33811 33811 0.019070659403496393 KWSNSFHHF 9 Unmodified _KWSNSFHHF_ 0 0 0 nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.1895446777344 3 397.189435 1188.54648 0.0042374 1.683E-06 1.0961 0.00043535 1.1003 0.00043703 397.189812340574 28.438 0.21473 28.467 28.354 28.569 0.029566 17 8 3 0 0 0 0.047196 1 14800 14800 41.956 31.057 1 3991300 28790 453 19284 19655 33812 33812 -0.04025489748164546 KWSTIIENNF 10 Unmodified _KWSTIIENNF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3228149414062 2 626.322045 1250.62954 0.25982 0.00016273 0.25231 0.00015803 0.51214 0.00032076 626.3220459219003 61.922 0.24524 61.435 61.284 61.529 -0.48764 25 11 3 0 0 0 0.30604 1 33694 33694 37.075 24.834 1 3582900 28791 6530 19285 19656 33813 33813 0.014247821891785861 KWSTIIENNF 10 Unmodified _KWSTIIENNF_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;ENST00000486275.1_1_21:42817479-42821257:+|nuORF ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.3236694335938 2 626.322045 1250.62954 0.43466 0.00027224 0.22448 0.0001406 0.65914 0.00041284 626.3220302101198 61.492 0.31486 61.459 61.293 61.608 -0.032787 31 15 3 0 0 0 0.025682 1 33553 33553 90.135 57.349 1 9605200 28792 6530 19285 19656 33814 33814 0.014247821891785861 KWTLGLDLV 9 Unmodified _KWTLGLDLV_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3036499023438 2 522.808042 1043.60153 0.40633 0.00021244 0.32187 0.00016828 0.72821 0.00038071 522.8078129612081 47.865 0.26517 47.827 47.68 47.946 -0.038647 20 12 2 0 0 0 0.21473 1 25754 25754 4.3292 0 1 2046200 + 28793 18801 19286 19657 33815 33815 0.08147503999748551 KWTLLQER 8 Unmodified _KWTLLQER_ 0 0 0 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 ENSG00000184985|ENST00000507866|SORCS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2044067382812 3 358.541586 1072.60293 -0.32901 -0.00011796 2.6243 0.00094092 2.2953 0.00082296 358.5422553612299 36.877 0.10502 36.899 36.858 36.963 0.021545 5 4 2 0 0 0 8.7369 1 19569 19569 2.9952 0.49676 1 481380 28794 9310 19287 19658 33816 33816 0.06953138088510968 KWTVHNLI 8 Unmodified _KWTVHNLI_ 0 0 0 REV__ENSG00000116213|ENST00000270708|WRAP73 REV__ENSG00000116213|ENST00000270708|WRAP73 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7935180664062 2 505.792727 1009.5709 1.0819 0.00054722 0.59544 0.00030117 1.6773 0.00084838 505.79316017281553 91.788 0.60169 85.613 85.252 85.853 -6.1757 79 33 3 0 0 0 0.30525 1 60533 60533 54.774 8.7526 1 37822000 + 28795 19030 19288 19659 33817 33817 0.06649770405374511 KWTVVHAG 8 Unmodified _KWTVVHAG_ 0 0 0 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 ENSG00000131019|ENST00000367339|ULBP3 MSMS AL20221201_MKP_PDAC_01 4 449.2513732910156 2 449.250695 896.486836 NaN NaN NaN NaN NaN NaN NaN 91.71 1 85.534 85.034 86.034 -6.1757 0 0 0 0.59893 1 60627 60627 34.187 0 1 28796 4287 19289 19660 33818 33818 0.03445239308462078 KWVDYSNKF 9 Unmodified _KWVDYSNKF_ 0 0 0 ENST00000461769.1_1_1:45269908-45270454:+|nuORF;ENST00000492398.5_1_1:45268975-45270965:+|nuORF;ENST00000465443.5_1_1:45266117-45270174:+|nuORF;ENSG00000173846|ENST00000372201|PLK3 ENST00000461769.1_1_1:45269908-45270454:+|nuORF ENST00000461769.1_1_1:45269908-45270454:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2009887695312 3 396.201229 1185.58186 NaN NaN NaN NaN NaN NaN NaN 39.854 1 39.859 39.359 40.359 0.0050545 0 0 0 0.83336 1 21237 21237 3.5871 3.1788 1 28797 8369 19290 19661 33819 33819 -0.003508720110176 KWVDYSNKF 9 Unmodified _KWVDYSNKF_ 0 0 0 ENST00000461769.1_1_1:45269908-45270454:+|nuORF;ENST00000492398.5_1_1:45268975-45270965:+|nuORF;ENST00000465443.5_1_1:45266117-45270174:+|nuORF;ENSG00000173846|ENST00000372201|PLK3 ENST00000461769.1_1_1:45269908-45270454:+|nuORF ENST00000461769.1_1_1:45269908-45270454:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2012023925781 3 396.201229 1185.58186 0.72357 0.00028668 -0.078658 -3.1164E-05 0.64491 0.00025551 396.20116234243534 44.852 0.26923 40 39.863 40.133 -4.852 27 17 2 0 0 0 0.060956 1 27419 27419 42.312 32.162 1 8435400 28798 8369 19290 19661 33820 33820 -0.003508720110176 KWVDYSNKF 9 Unmodified _KWVDYSNKF_ 0 0 0 ENST00000461769.1_1_1:45269908-45270454:+|nuORF;ENST00000492398.5_1_1:45268975-45270965:+|nuORF;ENST00000465443.5_1_1:45266117-45270174:+|nuORF;ENSG00000173846|ENST00000372201|PLK3 ENST00000461769.1_1_1:45269908-45270454:+|nuORF ENST00000461769.1_1_1:45269908-45270454:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 396.201229 1185.58186 0.40852 0.00016186 0.66056 0.00026172 1.0691 0.00042357 396.20111309019524 40.211 0.16496 39.914 39.843 40.008 -0.29716 -0.043186 0.00068352 NaN 42.312 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 826010 28799 8369 19290 19661 -0.003508720110176 KWWQWWIWWW 10 Unmodified _KWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.693115234375 2 845.908956 1689.80336 NaN NaN NaN NaN NaN NaN NaN 101.41 1 101.37 100.87 101.87 -0.04216 0 0 0 1.0061 1 56341 56341 0 0 1 + 28800 16776 19291 19662 33821 33821 -0.01394967524038293 KWWRWSWWWLK 11 Unmodified _KWWRWSWWWLK_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4547729492188 2 874.454062 1746.89357 NaN NaN NaN NaN NaN NaN NaN 30.826 1 30.826 30.326 31.326 0 0 0 0 0.9435 1 16032 16032 0 0 1 + 28801 16774 19292 19663 33822 33822 0.05000081804382717 KWWRWSWWWLK 11 Unmodified _KWWRWSWWWLK_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 874.4552612304688 2 874.454062 1746.89357 NaN NaN NaN NaN NaN NaN NaN 99.519 1 93.344 92.844 93.844 -6.1757 0 0 0 0.9435 1 66301 66301 0 0 1 + 28802 16774 19292 19663 33823 33823 0.05000081804382717 KWWWRWLRRRR 11 Unmodified _KWWWRWLRRRR_ 0 0 0 REV__chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 MSMS AL20221201_MKP_PDAC_01 4 893.0097045898438 2 893.013476 1784.0124 NaN NaN NaN NaN NaN NaN NaN 99.674 1 93.498 92.998 93.998 -6.1757 0 0 0 0.94307 1 66449 66449 0.30703 0.30703 1 + 28803 16778 19293 19664 33824 33824 0.15175293552601943 KWYDRRDYVF 10 Unmodified _KWYDRRDYVF_ 0 0 0 nc|ENSG00000110958|Q15185-2|PTGES3;nc|ENSG00000110958|Q15185-3|PTGES3;nc|ENSG00000110958|Q15185-4|PTGES3;ENSG00000110958|ENST00000262033|PTGES3;ENST00000537473.2_1_12:57059942-57081218:-|nuORF nc|ENSG00000110958|Q15185-2|PTGES3 nc|ENSG00000110958|Q15185-2|PTGES3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.5759582519531 3 483.242088 1446.70443 0.53159 0.00025689 -2.8288 -0.001367 -2.2973 -0.0011101 483.239895152376 43.438 0.17471 43.422 43.266 43.441 -0.015671 13 7 2 0 0 0 0.52659 1 23256 23256 14.957 8.3337 1 9239600 28804 2757 19294 19665 33825 33825 -0.0010503527958007908 KWYVLGDYL 9 Unmodified _KWYVLGDYL_ 0 0 0 REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2059326171875 3 386.206092 1155.59645 -0.0006478 -2.5018E-07 -0.87036 -0.00033614 -0.871 -0.00033639 386.2058498407988 17.384 0.098509 17.389 17.348 17.447 0.0050564 8 5 2 0 0 0 0.59218 1 8778 8778 0.96228 0.0979 1 648030 + 28805 24330 19295 19666 33826 33826 0.02487200137147738 KWYVLGDYL 9 Unmodified _KWYVLGDYL_ 0 0 0 REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2060852050781 3 386.206092 1155.59645 1.0585 0.00040881 1.0803 0.0004172 2.1388 0.00082602 386.2058796393625 18.292 0.14642 15.671 15.594 15.74 -2.6215 13 8 2 0 0 0 0.59218 1 9628 9628 0.96228 0 1 1106800 + 28806 24330 19295 19666 33827 33827 0.02487200137147738 KWYVLGDYL 9 Unmodified _KWYVLGDYL_ 0 0 0 REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF REV__ENST00000510312.6_1_5:73178320-73193923:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 386.206092 1155.59645 -0.0006478 -2.5018E-07 -0.87036 -0.00033614 -0.871 -0.00033639 386.2058498407988 17.384 0.098509 17.389 17.348 17.447 0.0050564 0 0 NaN 0.96228 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 648030 + 28807 24330 19295 19666 0.02487200137147738 KYAAHPGA 8 Unmodified _KYAAHPGA_ 0 0 0 ENST00000303375.9_1_17:60770648-60770867:+|nuORF ENST00000303375.9_1_17:60770648-60770867:+|nuORF ENST00000303375.9_1_17:60770648-60770867:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.7147521972656 2 407.713945 813.413337 1.2436 0.00050703 -0.14262 -5.8148E-05 1.101 0.00044888 407.713820131283 30.689 0.43026 27.192 26.936 27.366 -3.497 49 20 3 0 0 0 0.77907 1 17401 17401 10.183 0 1 117730000 28808 11593 19296 19667 33828 33828 -0.0008330913401550788 KYAALFSQM 9 Unmodified _KYAALFSQM_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7693481445312 2 529.770603 1057.52665 -0.50073 -0.00026527 0.48857 0.00025883 -0.012158 -6.4409E-06 529.7708139066243 56.066 0.22993 55.997 55.866 56.096 -0.068741 21 11 2 0 0 0 0.08691 1 30444 30444 36.127 17.981 1 5239500 28809 8814 19297 19668 33829 33829 0.0001899819685604598 KYAALFSQM 9 Unmodified _KYAALFSQM_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B;nc|ENSG00000020577|Q9UPU9-2|SAMD4A;nc|ENSG00000020577|Q9UPU9-3|SAMD4A;ENSG00000020577|ENST00000554335|SAMD4A ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7711791992188 2 529.770603 1057.52665 0.9846 0.00052161 -0.6814 -0.00036099 0.3032 0.00016062 529.7703101283776 61.768 0.45683 55.592 55.367 55.823 -6.1757 60 23 3 0 0 0 0.036857 2 39705 39705;39835 51.63 33.483 1 116790000 28810 8814 19297 19668 33830;33831 33830 0.0001899819685604598 KYADAVKNF 9 Unmodified _KYADAVKNF_ 0 0 0 nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2794799804688 2 528.279649 1054.54475 -0.33077 -0.00017474 0.6001 0.00031702 0.26933 0.00014228 528.2802060725567 28.55 0.17412 28.55 28.467 28.641 0 17 8 3 0 0 0 0.0099157 1 14755 14755 80.676 34.655 1 2437600 28811 9439 19298 19669 33832 33832 0.019654564432130428 KYADLSHNRL 10 Unmodified _KYADLSHNRL_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2195129394531 3 406.219283 1215.63602 -0.01666 -6.7676E-06 -1.0748 -0.00043661 -1.0915 -0.00044338 406.21890156208957 23.174 0.18124 23.186 23.072 23.253 0.012394 11 7 2 0 0 0 0.05292 1 11803 11803 57.204 18.645 1 3996500 28812 2985 19299 19670 33833 33833 0.03682720140568563 KYADLSHNRL 10 Unmodified _KYADLSHNRL_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5526428222656 3 406.219283 1215.63602 NaN NaN NaN NaN NaN NaN NaN 23.085 1 23.103 22.603 23.603 0.01749 0 0 0 0.3347 1 11879 11879 35.08 15.093 1 28813 2985 19299 19670 33834 33834 0.03682720140568563 KYADYFLEV 9 Unmodified _KYADYFLEV_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ;nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.287353515625 2 574.28714 1146.55973 0.5857 0.00033636 0.5281 0.00030328 1.1138 0.00063964 574.2871414771944 66.982 0.3138 66.982 66.795 67.108 0 31 14 3 0 0 0 0.32235 1 37305 37305 16.149 6.766 1 4696700 28814 2496 19300 19671 33835 33835 -0.007690964794619504 KYADYFLEV 9 Unmodified _KYADYFLEV_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ;nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2882690429688 2 574.28714 1146.55973 0.61374 0.00035246 -0.77171 -0.00044318 -0.15797 -9.0718E-05 574.287739275677 67.421 0.50459 66.939 66.57 67.075 -0.48218 49 22 4 0 0 0 0.062454 1 36805 36805 41.956 19.219 1 4267500 28815 2496 19300 19671 33836 33836 -0.007690964794619504 KYADYFLEV 9 Unmodified _KYADYFLEV_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ;nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.28714 1146.55973 0.77755 0.00044653 2.8129 0.0016154 3.5905 0.002062 574.2888097554448 66.868 0.059601 66.886 66.857 66.917 0.018028 -0.049894 0.0027386 NaN 41.956 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1097300 28816 2496 19300 19671 -0.007690964794619504 KYAEKATQFI 10 Unmodified _KYAEKATQFI_ 0 0 0 ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8268432617188 2 599.826963 1197.63937 -0.4748 -0.0002848 -0.1679 -0.00010071 -0.6427 -0.00038551 599.8270133311994 53.634 0.18901 53.57 53.463 53.652 -0.063423 24 13 2 0 0 0 0.34435 1 29076 29076 29.082 0 1 16771000 28817 5315 19301 19672 33837 33837 0.04845970194560323 KYAELKDRL 9 Unmodified _KYAELKDRL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2206115722656 3 379.220513 1134.63971 -0.44028 -0.00016696 -0.35619 -0.00013508 -0.79647 -0.00030204 379.22032168033485 25.007 0.2823 25.007 24.885 25.168 0 98 30 5 0 0 0 0.171 2 12856 12754;12856 21.799 4.3568 1 28783000 28818 9879 19302 19673 33838;33839 33839 0.07777389914417654 KYAELKDRL 9 Unmodified _KYAELKDRL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.326416015625 2 568.327131 1134.63971 -0.16642 -9.4581E-05 -0.26347 -0.00014974 -0.42989 -0.00024432 568.8283307924121 25.003 0.062126 25.003 24.989 25.051 0 12 8 3 0 0 0 0.37578 1 12813 12813 13.615 6.0059 1 960330 28819 9879 19302 19673 33840 33840 0.07777389914417654 KYAELKDRL 9 Unmodified _KYAELKDRL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5548706054688 3 379.220513 1134.63971 0.22474 8.5227E-05 0.6727 0.0002551 0.89744 0.00034033 379.55500329821734 25.271 0.13519 25.254 25.141 25.276 -0.017006 10 5 2 0 0 0 0.082934 1 12929 12929 35.08 5.6425 1 5928200 28820 9879 19302 19673 33841 33841 0.07777389914417654 KYAELKDRL 9 Unmodified _KYAELKDRL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2208251953125 3 379.220513 1134.63971 0.88616 0.00033605 0.21253 8.0597E-05 1.0987 0.00041665 379.22058881702395 27.868 0.51881 24.72 24.503 25.022 -3.1482 86 27 4 0 0 0 0.171 2 15559 15438;15559 24.957 7.8048 1 236520000 28821 9879 19302 19673 33842;33843 33843 0.07777389914417654 KYAELKDRL 9 Unmodified _KYAELKDRL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3275146484375 2 568.327131 1134.63971 0.54461 0.00030952 -0.46561 -0.00026462 0.079002 4.4899E-05 568.3268783879266 27.861 0.27354 24.713 24.605 24.878 -3.1482 25 14 2 0 0 0 0.0040067 1 15475 15475 121.35 49.638 1 15149000 28822 9879 19302 19673 33844 33844 0.07777389914417654 KYAELRDTI 9 Unmodified _KYAELRDTI_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2047424316406 3 370.204751 1107.59242 -1.1703 -0.00043326 -2.0593 -0.00076236 -3.2296 -0.0011956 370.2051356351096 32.316 0.18915 32.316 32.204 32.393 0 35 9 5 0 0 0 0.044042 1 16849 16849 47.732 26.142 1 9279100 28823 9845 19303 19674 33845 33845 0.0429311064342528 KYAELRDTI 9 Unmodified _KYAELRDTI_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.8026123046875 2 554.803488 1107.59242 -0.74934 -0.00041574 0.032229 1.7881E-05 -0.71711 -0.00039786 554.8035764786663 32.318 0.20908 32.318 32.184 32.393 0 27 10 4 0 0 0 0.20389 1 16857 16857 29.841 10.479 1 9675600 28824 9845 19303 19674 33846 33846 0.0429311064342528 KYAELRDTI 9 Unmodified _KYAELRDTI_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8046875 2 554.803488 1107.59242 0.49067 0.00027223 1.0281 0.0005704 1.5188 0.00084263 554.804109110863 36.366 0.34878 32.173 31.962 32.311 -4.1928 30 20 2 0 0 0 0.01504 2 21169 21169;21289 73.196 27.175 1 29898000 28825 9845 19303 19674 33847;33848 33847 0.0429311064342528 KYAELRDTI 9 Unmodified _KYAELRDTI_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2054138183594 3 370.204751 1107.59242 1.0309 0.00038165 -2.1792 -0.00080675 -1.1483 -0.0004251 370.2055345759 36.384 0.5618 32.191 31.853 32.415 -4.1928 79 34 4 0 0 0 0.047194 1 21177 21177 46.022 20.002 1 30986000 28826 9845 19303 19674 33849 33849 0.0429311064342528 KYAEQIMMI 9 2 Oxidation (M) _KYAEQIM(Oxidation (M))M(Oxidation (M))I_ KYAEQIM(1)M(1)I KYAEQIM(65)M(65)I 0 0 2 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2815551757812 2 579.78031 1157.54607 0.44855 0.00026006 0.80119 0.00046451 1.2497 0.00072457 579.7812465475329 36.134 0.35338 36.134 35.957 36.311 0 35 17 3 0 0 0 0.018301 1 19165 19165 65.235 39.836 1 6966600 28827 4118 19304 19675 33850 33850 733;734 -0.026404135745224266 KYAHMINGF 9 Oxidation (M) _KYAHM(Oxidation (M))INGF_ KYAHM(1)INGF KYAHM(55)INGF 0 0 1 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.765625 2 548.765852 1095.51715 -0.32815 -0.00018008 0.22782 0.00012502 -0.10033 -5.5057E-05 548.7660451561966 26.837 0.18981 26.837 26.719 26.909 0 25 8 4 0 0 0 0.031062 1 13799 13799 54.774 33.027 1 4271500 28828 617 19305 19676 33851 33851 91 -0.026787700886643506 KYAHMINGF 9 Oxidation (M) _KYAHM(Oxidation (M))INGF_ KYAHM(1)INGF KYAHM(48)INGF 0 0 1 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7664794921875 2 548.765852 1095.51715 0.25027 0.00013734 0.088983 4.8831E-05 0.33925 0.00018617 548.7657623211998 26.644 0.16676 26.673 26.59 26.757 0.028664 12 6 2 0 0 0 0.042911 1 13833 13833 48.346 31.404 1 6280600 28829 617 19305 19676 33852 33852 91 -0.026787700886643506 KYAHMINGF 9 Oxidation (M) _KYAHM(Oxidation (M))INGF_ KYAHM(1)INGF KYAHM(140)INGF 0 0 1 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2681274414062 2 548.765852 1095.51715 0.52238 0.00028666 0.31949 0.00017533 0.84187 0.00046199 548.766205181403 29.626 0.24852 26.324 26.232 26.48 -3.3016 24 14 2 0 0 0 0.00069393 1 16662 16662 141.83 107.42 1 51984000 28830 617 19305 19676 33853 33853 91 -0.026787700886643506 KYAHMINGF 9 Oxidation (M) _KYAHM(Oxidation (M))INGF_ KYAHM(1)INGF KYAHM(52)INGF 0 0 1 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MSMS AL20221201_MKP_PDAC_01 4 366.1813049316406 3 366.17966 1095.51715 NaN NaN NaN NaN NaN NaN NaN 29.646 1 26.345 25.845 26.845 -3.3016 0 0 0 0.068038 1 16685 16685 51.63 23.135 1 28831 617 19305 19676 33854 33854 91 -0.026787700886643506 KYAHMINGF 9 Unmodified _KYAHMINGF_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8489074707031 3 360.848022 1079.52224 1.911 0.00068956 -0.6516 -0.00023513 1.2594 0.00045444 360.8479233537461 40.955 0.49899 36.347 36.1 36.599 -4.6079 83 30 4 0 0 0 0.2001 2 24419 24419;24552 32.786 14.413 1 53323000 28832 617 19305 19677 33855;33856 33855 -0.014344662260555197 KYAHMINGF 9 Unmodified _KYAHMINGF_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.76953125 2 540.768394 1079.52224 1.0743 0.00058093 -0.66565 -0.00035996 0.40862 0.00022097 540.7686271291024 40.955 0.55486 36.347 36.1 36.655 -4.6079 99 34 4 0 0 0 0.0082281 2 24671 24541;24671 92.822 63.504 1 95260000 28833 617 19305 19677 33857;33858 33858 -0.014344662260555197 KYAHSSPWPAF 11 Unmodified _KYAHSSPWPAF_ 0 0 0 ENST00000473663.1_1_16:1989075-1991398:-|nuORF;ENSG00000198736|ENST00000361871|MSRB1;ENST00000361871.7_2_16:1990815-1993322:-|nuORF ENST00000473663.1_1_16:1989075-1991398:-|nuORF ENST00000473663.1_1_16:1989075-1991398:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.88134765625 3 430.880379 1289.61931 NaN NaN NaN NaN NaN NaN NaN 53.89 1 48.085 47.585 48.585 -5.8042 0 0 0 0.63856 1 34114 34114 15.538 0 1 28834 10137 19306 19678 33859 33859 -0.013917807453935893 KYAINPHL 8 Unmodified _KYAINPHL_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2715759277344 2 478.271627 954.528701 -0.15211 -7.2749E-05 0.051135 2.4456E-05 -0.10097 -4.8293E-05 478.2716330799142 41.774 0.494 41.774 41.48 41.975 0 74 25 4 0 0 0 0.50586 2 22619 22508;22619 34.187 19.606 1 45501000 28835 5301 19307 19679 33860;33861 33861 0.04961794996984281 KYAINPHL 8 Unmodified _KYAINPHL_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2716979980469 2 478.271627 954.528701 -0.09303 -4.4494E-05 -0.20602 -9.8535E-05 -0.29905 -0.00014303 478.27149689269515 41.982 0.50497 41.675 41.375 41.879 -0.30682 59 24 3 0 0 0 0.5953 2 22190 22190;22297 26.341 9.399 1 77358000 28836 5301 19307 19679 33862;33863 33862 0.04961794996984281 KYAINPHL 8 Unmodified _KYAINPHL_ 0 0 0 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 ENSG00000141101|ENST00000268802|NOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2713317871094 2 478.271627 954.528701 -0.23591 -0.00011283 -0.45554 -0.00021787 -0.69145 -0.0003307 478.27144805350554 41.729 0.43081 41.727 41.491 41.922 -0.0017929 44 20 3 0 0 0 0.5953 2 22239 22239;22345 26.341 9.399 1 16486000 28837 5301 19307 19679 33864;33865 33864 0.04961794996984281 KYAIVERLNF 10 Unmodified _KYAIVERLNF_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2401733398438 3 418.239796 1251.69756 -0.12718 -5.3193E-05 1.3555 0.00056694 1.2284 0.00051375 418.2404532329458 54.167 0.22056 54.101 53.981 54.202 -0.066936 23 10 3 0 0 0 0.095098 1 29414 29414 34.222 10.421 1 2569200 28838 2180 19308 19680 33866 33866 0.08177651839832834 KYAKEMGLI 9 Unmodified _KYAKEMGLI_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5320739746094 3 351.531811 1051.5736 1.486 0.00052237 -0.66052 -0.00023219 0.82546 0.00029017 351.5317237626929 39.036 0.38845 34.585 34.361 34.75 -4.4509 59 24 3 0 0 0 0.28023 2 23020 23020;23155 12.873 5.8355 1 31522000 + 28839 17660 19309 19681 33867;33868 33867 0.04987857748028546 KYAKLEEKL 9 Unmodified _KYAKLEEKL_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5569763183594 3 374.557013 1120.64921 0.52451 0.00019646 -0.59437 -0.00022263 -0.069858 -2.6166E-05 374.5567522708484 25.243 0.32942 22.36 22.201 22.531 -2.8831 68 27 3 0 0 0 0.11412 2 13773 13773;13895 31.636 6.5465 1 15593000 28840 8304 19310 19682 33869;33870 33869 0.09371158199928686 KYALELLTI 9 Unmodified _KYALELLTI_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.32421875 2 532.323525 1062.6325 1.631 0.00086824 -2.0853 -0.0011101 -0.45429 -0.00024183 532.3229665026054 81.576 0.3792 81.636 81.452 81.832 0.059929 34 14 3 0 0 0 0.047788 1 45095 45095 45.7 1.8413 1 4429800 28841 2782 19311 19683 33871 33871 0.10368657313983931 KYALELLTI 9 Unmodified _KYALELLTI_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.323525 1062.6325 0.57495 0.00030606 -1.8818 -0.0010017 -1.3068 -0.00069564 532.3228196863778 82.29 0.22095 81.794 81.674 81.895 -0.4952 0.079315 0.00014846 NaN 45.7 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 976570 28842 2782 19311 19683 0.10368657313983931 KYAMMFAEL 9 Unmodified _KYAMMFAEL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.265380859375 2 552.266838 1102.51912 0.71518 0.00039497 -2.8687 -0.0015843 -2.1536 -0.0011893 552.2646294624204 72.347 0.24841 71.87 71.752 72 -0.47609 21 11 3 0 0 0 0.28023 1 39605 39605 18.146 5.9057 1 1817800 28843 1444 19312 19684 33872 33872 -0.028034773950594172 KYAMMFAEL 9 Unmodified _KYAMMFAEL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2675170898438 2 552.266838 1102.51912 0.27107 0.0001497 -0.23989 -0.00013248 0.031183 1.7221E-05 552.267128502639 93.391 0.65535 87.216 86.948 87.603 -6.1757 149 45 4 0 0 0 0.08691 2 61669 61669;61792 36.127 15.673 1 125630000 28844 1444 19312 19684 33873;33874 33873 -0.028034773950594172 KYAMMFAEL 9 Unmodified _KYAMMFAEL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 552.266838 1102.51912 0.67132 0.00037075 -0.041317 -2.2818E-05 0.63 0.00034793 552.2665529952598 71.75 0.20846 71.789 71.685 71.893 0.039024 -0.040836 0.0016303 NaN 18.146 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1123900 28845 1444 19312 19684 -0.028034773950594172 KYAPRFNGF 9 Unmodified _KYAPRFNGF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2880249023438 2 550.287808 1098.56106 -0.0011932 -6.5658E-07 0.40783 0.00022443 0.40664 0.00022377 550.2879963180047 37.875 0.29327 37.892 37.731 38.025 0.01704 34 13 3 0 0 0 0.0083087 1 20088 20088 97.075 69.446 1 14414000 28846 8028 19313 19685 33875 33875 0.015725823999900967 KYAPRFNGF 9 Unmodified _KYAPRFNGF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1937866210938 3 367.194298 1098.56106 -0.075441 -2.7702E-05 0.073682 2.7055E-05 -0.0017598 -6.4618E-07 367.1945366305089 37.872 0.25194 37.889 37.753 38.005 0.01704 27 11 3 0 0 0 0.052168 1 20094 20094 39.95 22.837 1 8523500 28847 8028 19313 19685 33876 33876 0.015725823999900967 KYAPRFNGF 9 Unmodified _KYAPRFNGF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2894897460938 2 550.287808 1098.56106 0.65503 0.00036046 0.71849 0.00039537 1.3735 0.00075583 550.2881487094163 42.142 0.3788 37.457 37.234 37.613 -4.6846 46 23 2 0 0 0 0.0082281 2 25468 25325;25468 92.822 58.72 1 44606000 28848 8028 19313 19685 33877;33878 33878 0.015725823999900967 KYAPRFNGF 9 Unmodified _KYAPRFNGF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1944885253906 3 367.194298 1098.56106 1.3303 0.00048847 -0.023561 -8.6515E-06 1.3067 0.00047982 367.1942618932961 42.113 0.39773 37.428 37.234 37.632 -4.6846 45 24 2 0 0 0 0.087258 1 25469 25469 39.95 26.044 1 32483000 28849 8028 19313 19685 33879 33879 0.015725823999900967 KYAPTEAQL 9 Unmodified _KYAPTEAQL_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20221201_MKP_PDAC_01 4 510.7736206054688 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 35.509 1 31.316 30.816 31.816 -4.1928 0 0 0 0.014715 1 20609 20609 85.642 20.406 1 28850 1266 19314 19686 33880 33880 0.01977750206322071 KYAQNGQLF 9 Unmodified _KYAQNGQLF_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MSMS AL20221201_MKP_PDAC_01 4 534.7769775390625 2 534.777274 1067.53999 NaN NaN NaN NaN NaN NaN NaN 42.429 1 37.744 37.244 38.244 -4.6846 0 0 0 0.029091 1 25637 25637 67.344 31.3 1 28851 10070 19315 19687 33881 33881 0.008925723004722386 KYARNINSHF 10 Unmodified _KYARNINSHF_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2205200195312 3 417.219395 1248.63635 1.4461 0.00060335 -0.019838 -8.2768E-06 1.4263 0.00059507 417.21938501715204 20.934 0.2425 18.241 18.096 18.339 -2.693 21 13 2 0 0 0 0.63399 1 11159 11159 5.4027 0 1 3056300 28852 1445 19316 19688 33882 33882 0.021981398604111746 KYASCLKML 9 Carbamidomethyl (C) _KYASC(Carbamidomethyl (C))LKML_ KYASC(1)LKML KYASC(86)LKML 0 1 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000392357.1_1_17:80014171-80014696:+|nuORF ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2936401367188 2 557.293388 1112.57222 0.80185 0.00044686 -0.0058505 -3.2605E-06 0.796 0.0004436 557.2933266675581 43.159 0.24021 38.395 38.272 38.513 -4.7648 19 16 2 0 0 0 0.0089732 1 26154 26154 86.332 60.933 1 10625000 28853 7907 19317 19689 33883 33883 771 0.02043900387593567 KYAWVLDKL 9 Unmodified _KYAWVLDKL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3295288085938 2 568.329142 1134.64373 0.27662 0.00015721 1.1031 0.00062694 1.3798 0.00078415 568.3299064965757 61.636 0.14813 61.149 61.074 61.222 -0.48764 11 6 2 0 0 0 0.11005 1 33594 33594 32.037 15.888 1 1266300 28854 1933;6461 19318 19690 33884 33884 0.08179479408113366 KYAWVLDKL 9 Unmodified _KYAWVLDKL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.33056640625 2 568.329142 1134.64373 0.43301 0.00024609 -0.097657 -5.5501E-05 0.33535 0.00019059 568.3292503394171 61.253 0.33913 61.21 61.044 61.383 -0.04351 42 16 3 0 0 0 0.0026383 2 33386 33386;33487 128.57 78.64 1 58142000 28855 1933;6461 19318 19690 33885;33886 33885 0.08179479408113366 KYAWVLDKL 9 Unmodified _KYAWVLDKL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2219848632812 3 379.221853 1134.64373 0.28242 0.0001071 0.21943 8.3213E-05 0.50185 0.00019031 379.2219607442919 61.228 0.27954 61.185 61.044 61.324 -0.04351 32 13 3 0 0 0 0.009483 1 33395 33395 65.474 40.592 1 15146000 28856 1933;6461 19318 19690 33887 33887 0.08179479408113366 KYAWVLDKL 9 Unmodified _KYAWVLDKL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000434005.1_1_7:22551057-22551540:-|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3296508789062 2 568.329142 1134.64373 0.94589 0.00053757 0.35318 0.00020072 1.2991 0.00073829 568.3297724928584 90.204 0.99664 84.028 83.58 84.577 -6.1757 123 57 4 0 0 0 0.0061279 1 59560 59560 114.19 72.347 1 135380000 28857 1933;6461 19318 19690 33888 33888 0.08179479408113366 KYCATRWSF 9 Unmodified _KYCATRWSF_ 0 0 0 REV__ENSG00000282419|ENST00000632372|TEX13D REV__ENSG00000282419|ENST00000632372|TEX13D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5210876464844 3 387.855176 1160.5437 NaN NaN NaN NaN NaN NaN NaN 60.789 1 60.3 59.8 60.8 -0.48932 0 0 0 0.82396 1 33106 33106 2.7352 0.82882 1 + 28858 24684 19319 19691 33889 33889 -0.03015081197327163 KYCDRSFSI 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))DRSFSI_ KYC(1)DRSFSI KYC(77)DRSFSI 0 1 0 nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;nc|ENSG00000142611|Q9HAZ2-4|PRDM16;nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000085276|Q03112-5|MECOM nc|ENSG00000142611|Q9HAZ2-2|PRDM16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2802734375 2 588.279323 1174.54409 0.44892 0.00026409 0.1183 6.9595E-05 0.56723 0.00033369 588.2794283178908 38.451 0.23225 34.082 33.932 34.164 -4.3689 23 14 2 0 0 0 0.011291 1 22682 22682 76.825 42.423 1 8286900 28859 5431;1405 19320 19692 33890 33890 133 -0.03619706268136724 KYCGHLYGL 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))GHLYGL_ KYC(1)GHLYGL KYC(89)GHLYGL 0 1 0 ENSG00000198791|ENST00000361272|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 ENSG00000198791|ENST00000361272|CNOT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7742919921875 2 555.773677 1109.5328 0.65613 0.00036466 -0.80361 -0.00044662 -0.14747 -8.1961E-05 555.7736278856711 39.683 0.26199 35.232 35.091 35.353 -4.4509 23 16 2 0 0 0 0.0086179 1 23560 23560 89.427 45.02 1 13335000 28860 10152 19321 19693 33891 33891 919 -0.017584835716206726 KYCGHMYQL 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))GHMYQL_ KYC(1)GHMYQL KYC(85)GHMYQL 0 1 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.271240234375 2 600.270444 1198.52633 0.7133 0.00042817 -0.10034 -6.0232E-05 0.61296 0.00036794 600.2701130859065 33.796 0.41312 29.81 29.589 30.002 -3.9853 47 22 3 0 0 0 0.0090948 2 19475 19348;19475 85.272 43.432 1 13147000 28861 5406 19322 19694 33892;33893 33893 554 -0.06498744794635058 KYCGRLYGL 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))GRLYGL_ KYC(1)GRLYGL KYC(100)GRLYGL 0 1 0 nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 nc|ENSG00000155508|Q9UFF9-2|CNOT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7969970703125 2 565.294776 1128.575 0.39894 0.00022552 -0.46084 -0.00026051 -0.061904 -3.4994E-05 565.2947592019382 39.957 0.32599 35.428 35.203 35.529 -4.5294 47 24 3 0 0 0 0.00856 2 23694 23694;23827 100.37 49.516 1 36308000 28862 6392 19323 19695 33894;33895 33894 633 0.015854918367494975 KYCKLADCW 9 2 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))KLADC(Carbamidomethyl (C))W_ KYC(1)KLADC(1)W KYC(62)KLADC(62)W 0 2 0 ENST00000476956.5_1_6:127588209-127601431:+|nuORF;ENST00000368314.5_1_6:127588039-127601431:+|nuORF ENST00000476956.5_1_6:127588209-127601431:+|nuORF ENST00000476956.5_1_6:127588209-127601431:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2832641601562 2 622.283551 1242.55255 0.82819 0.00051537 -1.4336 -0.00089208 -0.60538 -0.00037672 622.2825606496822 37.962 0.22885 33.594 33.473 33.702 -4.3689 18 13 2 0 0 0 0.021948 1 22344 22344 61.602 42.345 1 5388800 28863 12265 19324 19696 33896 33896 974;975 -0.059024756231565334 KYCQVIRVI 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))QVIRVI_ KYC(1)QVIRVI KYC(66)QVIRVI 0 1 0 ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5622253417969 3 393.561993 1177.66415 0.66315 0.00026099 -0.14545 -5.7242E-05 0.5177 0.00020375 393.5620236391071 46.479 0.333 41.399 41.215 41.548 -5.0805 122 42 4 0 0 0 0.017075 2 28753 28608;28753 66.457 51.208 1 432370000 28864 1793 19325 19697 33897;33898 33898 173 0.0824232679628949 KYCQVIRVI 9 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))QVIRVI_ KYC(1)QVIRVI KYC(130)QVIRVI 0 1 0 ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8410034179688 2 589.839351 1177.66415 0.32087 0.00018926 0.20377 0.00012019 0.52464 0.00030945 589.839526356145 46.488 0.32951 41.408 41.215 41.545 -5.0805 119 41 4 0 0 0 0.0018186 2 28618 28618;28766 133.7 101.4 1 425240000 28865 1793 19325 19697 33899;33900 33899 173 0.0824232679628949 KYCYLQNEVF 10 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))YLQNEVF_ KYC(1)YLQNEVF KYC(79)YLQNEVF 0 1 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.3219604492188 2 682.321188 1362.62782 1.5018 0.0010247 -0.9251 -0.00063121 0.57668 0.00039348 682.320717239716 61.001 0.50611 54.853 54.63 55.136 -6.1478 86 26 4 0 0 0 0.016642 2 39168 39168;39300 78.728 45.283 1 144080000 28866 1675 19326 19698 33901;33902 33901 162 -0.038985948911204105 KYCYLQNEVF 10 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))YLQNEVF_ KYC(1)YLQNEVF KYC(79)YLQNEVF 0 1 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.322265625 2 682.321188 1362.62782 1.6935 0.0011555 -1.5038 -0.001026 0.1897 0.00012944 682.3201280263104 63.902 0.432 57.727 57.523 57.955 -6.1757 35 23 2 0 0 0 0.016642 1 41354 41354 78.728 60.355 1 15765000 28867 1675 19326 19698 33903 33903 162 -0.038985948911204105 KYCYLQNEVF 10 Carbamidomethyl (C) _KYC(Carbamidomethyl (C))YLQNEVF_ KYC(1)YLQNEVF KYC(46)YLQNEVF 0 1 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS AL20221201_MKP_PDAC_01 4 682.31982421875 2 682.321188 1362.62782 NaN NaN NaN NaN NaN NaN NaN 61.312 1 55.164 54.664 55.664 -6.1478 0 0 0 0.168 1 39486 39486 45.7 15.859 1 28868 1675 19326 19698 33904 33904 162 -0.038985948911204105 KYDAAHFLI 9 Unmodified _KYDAAHFLI_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.289306640625 2 539.290017 1076.56548 0.5197 0.00028027 -0.25406 -0.00013701 0.26564 0.00014326 539.2898695240804 53.43 0.23832 53.43 53.327 53.566 0 20 10 2 0 0 0 0.05447 1 29612 29612 43.858 23.405 1 4980200 28869 3701 19327 19699 33905 33905 0.030260468229016624 KYDAAHFLI 9 Unmodified _KYDAAHFLI_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2899780273438 2 539.290017 1076.56548 0.24477 0.000132 0.38342 0.00020678 0.62819 0.00033878 539.290049835214 53.921 0.32109 53.455 53.285 53.606 -0.46664 55 15 5 0 0 0 0.017075 2 29231 29128;29231 66.457 39.573 1 27367000 28870 3701 19327 19699 33906;33907 33907 0.030260468229016624 KYDAAHFLI 9 Unmodified _KYDAAHFLI_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.8627624511719 3 359.862437 1076.56548 0.36329 0.00013074 0.18348 6.6026E-05 0.54677 0.00019676 359.86249919938354 53.909 0.2199 53.443 53.327 53.547 -0.46664 25 10 3 0 0 0 0.20428 1 29176 29176 21.59 12.207 1 2654500 28871 3701 19327 19699 33908 33908 0.030260468229016624 KYDAAHFLI 9 Unmodified _KYDAAHFLI_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2899780273438 2 539.290017 1076.56548 -0.27314 -0.0001473 0.44807 0.00024164 0.17493 9.4338E-05 539.2903682692707 53.568 0.17107 53.505 53.381 53.552 -0.063423 15 8 2 0 0 0 0.022193 1 29035 29035 61.357 34.474 1 6628800 28872 3701 19327 19699 33909 33909 0.030260468229016624 KYDAAHFLI 9 Unmodified _KYDAAHFLI_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8632507324219 3 359.862437 1076.56548 2.1082 0.00075866 0.8525 0.00030678 2.9607 0.0010654 359.8623791155755 58.632 0.44504 52.558 52.353 52.798 -6.0745 42 24 2 0 0 0 0.20428 1 37599 37599 16.566 5.742 1 27313000 28873 3701 19327 19699 33910 33910 0.030260468229016624 KYDASAIDF 9 Unmodified _KYDASAIDF_ 0 0 0 ENST00000495848.1_1_1:201979803-201981353:+|nuORF;ELF3|p.S209*|1|0.08|ENSG00000163435|chr1:202012967-202013007|TCCCACTCCTCAGACTCCGGTGGAAGTGACGTGGACCTGGA/-|frameshift_variant;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3;ENST00000490203.5_1_1:201979803-201981353:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.24755859375 2 515.248015 1028.48148 0.33076 0.00017042 -0.35593 -0.00018339 -0.025176 -1.2972E-05 515.2478670283563 47.201 0.46561 47.201 46.962 47.427 0 67 21 4 0 0 0 0.062454 1 25837 25837 41.956 14.327 1 57354000 28874 245 19328 19700 33911 33911 -0.031625290646843496 KYDASAIDF 9 Unmodified _KYDASAIDF_ 0 0 0 ENST00000495848.1_1_1:201979803-201981353:+|nuORF;ELF3|p.S209*|1|0.08|ENSG00000163435|chr1:202012967-202013007|TCCCACTCCTCAGACTCCGGTGGAAGTGACGTGGACCTGGA/-|frameshift_variant;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3;ENST00000490203.5_1_1:201979803-201981353:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF ENST00000495848.1_1_1:201979803-201981353:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2484130859375 2 515.248015 1028.48148 0.55447 0.00028569 -0.085413 -4.4009E-05 0.46906 0.00024168 515.2481042677754 53.289 0.44223 47.485 47.234 47.676 -5.8042 69 27 3 0 0 0 0.0094097 2 33571 33571;33692 82.529 40.69 1 81143000 28875 245 19328 19700 33912;33913 33912 -0.031625290646843496 KYDDNVKAYF 10 Unmodified _KYDDNVKAYF_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.8062744140625 2 631.806228 1261.5979 -0.43752 -0.00027643 0.14416 9.108E-05 -0.29336 -0.00018534 631.8061677118359 41.321 0.24515 41.321 41.196 41.441 0 29 11 3 0 0 0 0.00018404 1 22266 22266 117.84 80.763 1 12215000 28876 2733 19329 19701 33914 33914 -0.022432105647794742 KYDDNVKAYF 10 Unmodified _KYDDNVKAYF_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.5393981933594 3 421.539911 1261.5979 -0.54098 -0.00022804 0.24446 0.00010305 -0.29651 -0.00012499 421.5399425566264 41.353 0.23012 41.353 41.174 41.404 0 18 10 2 0 0 0 0.0199 1 22280 22280 64.927 44.056 1 6674500 28877 2733 19329 19701 33915 33915 -0.022432105647794742 KYDDNVKAYF 10 Unmodified _KYDDNVKAYF_ 0 0 0 ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP ENSG00000110711|ENST00000279146|AIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.8057861328125 2 631.806228 1261.5979 0.38373 0.00024244 -0.83943 -0.00053036 -0.4557 -0.00028791 631.8059401016405 46.191 0.3512 41.236 41.018 41.369 -4.9549 36 23 2 0 0 0 0.00011177 1 28432 28432 118.21 80.235 1 24656000 28878 2733 19329 19701 33916 33916 -0.022432105647794742 KYDEFIHKI 9 Unmodified _KYDEFIHKI_ 0 0 0 nc|ENSG00000129007|Q96GE6-3|CALML4;nc|ENSG00000129007|Q96GE6-2|CALML4;ENST00000562767.2_3_15:68486355-68521975:-|nuORF;nc|ENSG00000129007|Q96GE6-4|CALML4;ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2173156738281 3 398.21688 1191.62881 0.28038 0.00011165 -0.21112 -8.4072E-05 0.069259 2.758E-05 398.2169010866511 36.938 0.20012 36.938 36.837 37.037 0 20 9 3 0 0 0 0.2289 1 19623 19623 20.581 14.798 1 1654700 28879 4108 19330 19702 33917 33917 0.040659875401161116 KYDEFIHKI 9 Unmodified _KYDEFIHKI_ 0 0 0 nc|ENSG00000129007|Q96GE6-3|CALML4;nc|ENSG00000129007|Q96GE6-2|CALML4;ENST00000562767.2_3_15:68486355-68521975:-|nuORF;nc|ENSG00000129007|Q96GE6-4|CALML4;ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2171325683594 3 398.21688 1191.62881 -0.14881 -5.9258E-05 0.44131 0.00017574 0.2925 0.00011648 398.21700816475175 37.344 0.26044 37.073 36.921 37.181 -0.27133 18 10 2 0 0 0 0.20389 1 19613 19613 22.775 13.531 1 2390700 28880 4108 19330 19702 33918 33918 0.040659875401161116 KYDEFIHKI 9 Unmodified _KYDEFIHKI_ 0 0 0 nc|ENSG00000129007|Q96GE6-3|CALML4;nc|ENSG00000129007|Q96GE6-2|CALML4;ENST00000562767.2_3_15:68486355-68521975:-|nuORF;nc|ENSG00000129007|Q96GE6-4|CALML4;ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 nc|ENSG00000129007|Q96GE6-3|CALML4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.576171875 3 398.21688 1191.62881 0.41501 0.00016526 0.21754 8.663E-05 0.63255 0.00025189 398.2169427384967 41.444 0.34336 36.836 36.686 37.03 -4.6079 26 22 2 0 0 0 0.065007 2 24889 24867;24889 41.347 31.803 1 14918000 28881 4108 19330 19702 33919;33920 33920 0.040659875401161116 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7952880859375 2 595.795663 1189.57677 0.49601 0.00029552 1.3251 0.00078951 1.8212 0.001085 595.7969926121134 42.432 0.3646 42.432 42.299 42.663 0 36 17 3 0 0 0 0.0082353 1 22957 22957 96.111 61.709 1 6538400 28882 10198 19331 19703 33921 33921 -0.010431758736331176 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5327453613281 3 397.532868 1189.57677 0.4286 0.00017038 -0.1863 -7.4062E-05 0.2423 9.6322E-05 397.8671212021062 42.431 0.26444 42.431 42.279 42.544 0 26 12 3 0 0 0 0.032796 1 22978 22978 42.312 32.548 1 4542300 28883 10198 19331 19703 33922 33922 -0.010431758736331176 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.79541015625 2 595.795663 1189.57677 NaN NaN NaN NaN NaN NaN NaN 42.747 1 42.437 41.937 42.937 -0.31039 0 0 0 0.39118 1 22718 22718 20.415 11.669 1 28884 10198 19331 19703 33923 33923 -0.010431758736331176 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MSMS AL20221201_MKP_PDAC_01 4 595.794189453125 2 595.795663 1189.57677 NaN NaN NaN NaN NaN NaN NaN 46.753 1 41.673 41.173 42.173 -5.0805 0 0 0 0.012071 1 28942 28942 122.18 80.224 1 28885 10198 19331 19703 33924 33924 -0.010431758736331176 KYDEGLYRF 9 Unmodified _KYDEGLYRF_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 397.532868 1189.57677 0.12716 5.0549E-05 -0.86408 -0.0003435 -0.73692 -0.00029295 397.8669342882617 42.655 0.065193 42.349 42.318 42.383 -0.30682 -0.041213 -0.0006886 NaN 42.312 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2219200 28886 10198 19331 19703 -0.010431758736331176 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.79736328125 2 602.797872 1203.58119 0.080046 4.8251E-05 -0.65544 -0.0003951 -0.5754 -0.00034685 602.7974131710996 67.502 0.67016 67.502 67.226 67.896 0 109 30 6 0 0 0 0.032796 2 37648 37556;37648 53.833 28.433 1 153220000 28887 551 19332 19704 33925;33926 33926 -0.012457114507014921 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.79736328125 2 602.797872 1203.58119 0.1952 0.00011766 0.73295 0.00044182 0.92815 0.00055949 602.7985107451949 67.45 0.4703 67.468 67.197 67.668 0.018028 72 23 4 0 0 0 0.0090524 2 37107 37006;37107 85.642 48.651 1 44820000 28888 551 19332 19704 33927;33928 33928 -0.012457114507014921 KYDEIFYNL 9 Unmodified _KYDEIFYNL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7980346679688 2 602.797872 1203.58119 0.20091 0.00012111 0.57368 0.00034581 0.77459 0.00046692 602.7981545356461 80.607 1.9952 74.431 73.518 75.514 -6.1757 361 115 5 0 0 0 0.012668 9 53327 52582;52710;52830;52951;53070;53194;53327;53459;53596 72.968 38.468 1 379360000 28889 551 19332 19704 33929;33930;33931;33932;33933;33934;33935;33936;33937 33935 -0.012457114507014921 KYDGHQQFF 9 Unmodified _KYDGHQQFF_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MSMS AL20221201_MKP_PDAC_01 4 390.5179748535156 3 390.517329 1168.53016 NaN NaN NaN NaN NaN NaN NaN 37.406 1 33.122 32.622 33.622 -4.2835 0 0 0 0.70001 1 21954 21954 6.1918 0.78914 1 28890 9825 19333 19705 33938 33938 -0.04736615704905489 KYDGHRVWL 9 Unmodified _KYDGHRVWL_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8768615722656 3 391.876969 1172.60908 -0.20583 -8.0659E-05 0.30208 0.00011838 0.096258 3.7721E-05 391.8770724505148 32.623 0.24971 32.494 32.35 32.6 -0.12915 26 10 4 0 0 0 0.11005 1 16988 16988 32.037 16.299 1 6187200 28891 5022 19334 19706 33939 33939 0.02967656320038259 KYDGHRVWL 9 Unmodified _KYDGHRVWL_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8766174316406 3 391.876969 1172.60908 -0.23053 -9.034E-05 -1.3206 -0.00051753 -1.5512 -0.00060787 391.87638188448307 32.454 0.33103 32.484 32.341 32.672 0.029743 37 12 4 0 0 0 0.040733 1 17030 17030 49.527 20.09 1 5162200 28892 5022 19334 19706 33940 33940 0.02967656320038259 KYDGHRVWL 9 Unmodified _KYDGHRVWL_ 0 0 0 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 ENSG00000138131|ENST00000260702|LOXL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8772583007812 3 391.876969 1172.60908 0.88165 0.0003455 0.070985 2.7818E-05 0.95264 0.00037332 391.87710346778937 35.426 0.38567 31.233 31.04 31.425 -4.1928 52 23 3 0 0 0 0.067618 1 20585 20585 40.725 21.099 1 30084000 28893 5022 19334 19706 33941 33941 0.02967656320038259 KYDPEEPIYF 10 Unmodified _KYDPEEPIYF_ 0 0 0 nc|ENSG00000106392|Q9NS00-2|C1GALT1;ENSG00000106392|ENST00000436587|C1GALT1 nc|ENSG00000106392|Q9NS00-2|C1GALT1 nc|ENSG00000106392|Q9NS00-2|C1GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.3117065429688 2 650.808436 1299.60232 0.097508 6.3459E-05 0.36756 0.00023921 0.46507 0.00030267 650.8084203916027 59.266 0.23206 59.266 59.123 59.355 0 15 9 2 0 0 0 0.25982 1 33017 33017 29.841 15.002 1 2909200 28894 2423 19335 19707 33942 33942 -0.0354974614187995 KYDPNVYSI 9 Unmodified _KYDPNVYSI_ 0 0 0 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2825927734375 2 549.776939 1097.53933 0.71809 0.00039479 1.9715 0.0010839 2.6896 0.0014787 549.7766692053577 43.026 0.27398 43.026 42.909 43.183 0 25 13 2 0 0 0 0.017075 1 23374 23374 66.457 16.524 1 15463000 28895 5057 19336 19708 33943 33943 -0.005542671392504417 KYDPNVYSI 9 Unmodified _KYDPNVYSI_ 0 0 0 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2771606445312 2 549.776939 1097.53933 0.82584 0.00045403 -2.063 -0.0011342 -1.2372 -0.00068017 550.2771809377563 48.68 0.33798 43.284 43.069 43.407 -5.3961 43 19 3 0 0 0 0.15471 1 30292 30292 27.629 6.0918 1 35313000 28896 5057 19336 19708 33944 33944 -0.005542671392504417 KYDRITNHI 9 Unmodified _KYDRITNHI_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2121276855469 3 387.212128 1158.61456 -0.43954 -0.0001702 -0.12417 -4.8079E-05 -0.56371 -0.00021828 387.2120891320947 21.006 0.13262 21.006 20.922 21.055 0 53 21 3 0 0 0 0.43515 1 10606 10606 10.8 5.3968 1 5051400 28897 13944 19337 19709 33945 33945 0.04159335111830842 KYDRITNHI 9 Unmodified _KYDRITNHI_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2123718261719 3 387.212128 1158.61456 0.57776 0.00022371 0.0052792 2.0442E-06 0.58304 0.00022576 387.21218958467506 23.801 0.45493 20.974 20.741 21.196 -2.8273 90 27 4 0 0 0 0.13231 2 12942 12834;12942 29.841 8.2504 1 98846000 28898 13944 19337 19709 33946;33947 33947 0.04159335111830842 KYDRITNHI 9 Unmodified _KYDRITNHI_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.31494140625 2 580.314554 1158.61456 0.20285 0.00011772 0.53509 0.00031052 0.73794 0.00042824 580.3151603087482 23.817 0.28041 20.99 20.844 21.124 -2.8273 28 17 2 0 0 0 0.094905 1 12873 12873 29.841 8.3036 1 4686800 28899 13944 19337 19709 33948 33948 0.04159335111830842 KYDRITNHI 9 Unmodified _KYDRITNHI_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 387.212128 1158.61456 -0.43954 -0.0001702 -0.12417 -4.8079E-05 -0.56371 -0.00021828 387.2120891320947 21.006 0.13262 21.006 20.922 21.055 0 0.015824 -9.9245E-05 NaN 29.841 53 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5051400 28900 13944 19337 19709 0.04159335111830842 KYDRNIQV 8 Unmodified _KYDRNIQV_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2822875976562 2 518.282723 1034.55089 -0.16048 -8.3173E-05 -1.2639 -0.00065505 -1.4244 -0.00073823 518.2815218395749 31.372 0.13083 31.402 31.368 31.499 0.030106 8 5 2 0 0 0 0.60622 1 16456 16456 25.399 2.663 1 2092700 28901 6727 19338 19710 33949 33949 0.03499974674741679 KYDRVEALIEL 11 Unmodified _KYDRVEALIEL_ 0 0 0 REV__ENSG00000168566|ENST00000342415|SNRNP48 REV__ENSG00000168566|ENST00000342415|SNRNP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.880126953125 2 674.877185 1347.73982 0.66836 0.00045106 1.1141 0.0007519 1.7825 0.001203 674.8785644548175 64.296 0.2122 63.811 63.675 63.887 -0.48512 14 9 2 0 0 0 0.65846 1 35089 35089 8.1555 1.4324 1 746250 + 28902 22322 19339 19711 33950 33950 0.07985582457581586 KYDSTAIYL 9 Unmodified _KYDSTAIYL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2805786132812 2 537.279315 1072.54408 0.67377 0.000362 -0.31021 -0.00016667 0.36356 0.00019533 537.2788820312697 49.677 0.50187 49.677 49.465 49.966 0 61 22 4 0 0 0 0.07087 2 27276 27276;27394 39.95 14.55 1 239860000 28903 3760 19340 19712 33951;33952 33951 0.010706170035064133 KYDSTAIYL 9 Unmodified _KYDSTAIYL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2816772460938 2 537.279315 1072.54408 0.72258 0.00038823 0.32661 0.00017548 1.0492 0.00056371 537.2794236358228 50.017 0.26174 49.624 49.51 49.772 -0.3923 38 12 4 0 0 0 0.047788 2 26882 26882;26989 45.7 23.953 1 18925000 28904 3760 19340 19712 33953;33954 33953 0.010706170035064133 KYDSTAIYL 9 Unmodified _KYDSTAIYL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.27880859375 2 537.279315 1072.54408 0.88361 0.00047474 -3.7127 -0.0019947 -2.829 -0.00152 537.2770683330006 49.649 0.13405 49.6 49.492 49.626 -0.048824 12 6 2 0 0 0 0.047788 1 26827 26827 45.7 17.213 1 3999400 28905 3760 19340 19712 33955 33955 0.010706170035064133 KYDSTAIYL 9 Unmodified _KYDSTAIYL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2799682617188 2 537.279315 1072.54408 1.038 0.00055772 0.20501 0.00011015 1.243 0.00066786 537.2794305812297 55.454 0.59319 49.533 49.3 49.893 -5.9211 95 35 3 0 0 0 0.032796 3 35305 35163;35305;35437 53.833 32.086 1 446710000 28906 3760 19340 19712 33956;33957;33958 33957 0.010706170035064133 KYDTALNLL 9 Unmodified _KYDTALNLL_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7960815429688 2 525.795132 1049.57571 0.42342 0.00022263 1.1529 0.0006062 1.5763 0.00082883 525.7958188476885 62.76 0.2129 62.76 62.633 62.846 0 15 8 2 0 0 0 0.1773 1 35009 35009 25.399 0 1 1332600 28907 4659 19341 19713 33959 33959 0.05290609757457787 KYDTALNLL 9 Unmodified _KYDTALNLL_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7970581054688 2 525.795132 1049.57571 0.31855 0.00016749 1.0067 0.00052934 1.3253 0.00069683 525.795548209095 63.068 0.24837 62.582 62.501 62.75 -0.48617 23 11 3 0 0 0 0.036857 1 34405 34405 51.63 15.503 1 2660200 28908 4659 19341 19713 33960 33960 0.05290609757457787 KYDVLFALF 9 Unmodified _KYDVLFALF_ 0 0 0 ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.312744140625 2 558.310418 1114.60628 4.6384 0.0025897 -2.0957 -0.0011701 2.5427 0.0014196 558.3091041221529 99.068 0.27258 99.04 98.891 99.164 -0.028282 26 9 4 0 0 0 0.025842 1 55012 55012 57.722 19.546 1 52361000 28909 5179 19342 19714 33961 33961 0.05356388142513424 KYDYVGRLL 9 Unmodified _KYDYVGRLL_ 0 0 0 ENSG00000164040|ENST00000296425|PGRMC2;nc|ENSG00000164040|O15173-2|PGRMC2 ENSG00000164040|ENST00000296425|PGRMC2 ENSG00000164040|ENST00000296425|PGRMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8179931640625 2 563.816399 1125.61824 0.53314 0.00030059 0.81146 0.00045751 1.3446 0.00075811 563.8169596337126 49.011 0.19491 48.639 48.519 48.714 -0.37172 16 9 2 0 0 0 0.24903 1 26338 26338 26.268 9.1552 1 2321600 28910 7118 19343 19715 33962 33962 0.060460048857066795 KYEAIQLTF 9 Unmodified _KYEAIQLTF_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8023071289062 2 556.802957 1111.59136 NaN NaN NaN NaN NaN NaN NaN 64.603 1 64.603 64.103 65.103 0 0 0 0 0.63437 1 36029 36029 16.149 3.1066 1 28911 2543 19344 19716 33963 33963 0.04002896274505474 KYEAIQLTF 9 Unmodified _KYEAIQLTF_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8034057617188 2 556.802957 1111.59136 0.56595 0.00031513 0.29506 0.00016429 0.86101 0.00047942 556.8028997498733 65.029 0.32311 64.545 64.382 64.705 -0.48428 23 14 2 0 0 0 0.08907 1 35486 35486 45.7 5.7423 1 7797300 28912 2543 19344 19716 33964 33964 0.04002896274505474 KYEAIQLTF 9 Unmodified _KYEAIQLTF_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.802957 1111.59136 0.98218 0.00054688 0.95299 0.00053063 1.9352 0.0010775 556.8031204396365 64.568 0.21313 64.558 64.432 64.646 -0.010529 0.0064516 0.00059985 NaN 45.7 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1834300 28913 2543 19344 19716 0.04002896274505474 KYEDGIALL 9 Unmodified _KYEDGIALL_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000452721.2_1_12:110813869-110815450:-|nuORF;ENST00000481473.5_1_12:110811951-110816407:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2827758789062 2 511.281857 1020.54916 0.38046 0.00019452 2.2442 0.0011474 2.6246 0.0013419 511.28280235468304 59.097 0.27595 59.097 58.965 59.241 0 30 11 3 0 0 0 0.044011 1 32913 32913 47.749 5.6541 1 4003500 28914 9832 19345 19717 33965 33965 0.039709208661292905 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2913208007812 2 572.289682 1142.56481 0.49571 0.00028369 -0.47575 -0.00027227 0.019959 1.1423E-05 572.2893815200316 75.025 0.51442 75.025 74.803 75.318 0 117 30 5 0 0 0 0.013041 3 41665 41665;41768;41873 71.922 35.878 1 52369000 28915 2318 19346 19718 33966;33967;33968 33966 -0.0007679261682369543 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.2891235351562 2 572.289682 1142.56481 0.21446 0.00012274 0.49362 0.0002825 0.70809 0.00040523 572.2898517209719 74.864 0.51094 74.91 74.616 75.127 0.045959 90 23 5 0 0 0 0.013041 2 41180 41180;41285 71.922 41.697 1 178780000 28916 2318 19346 19718 33969;33970 33969 -0.0007679261682369543 KYEELFPAF 9 Unmodified _KYEELFPAF_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2916870117188 2 572.289682 1142.56481 0.27639 0.00015818 0.31127 0.00017814 0.58766 0.00033631 572.2898027654071 93.117 1.4309 86.941 86.431 87.862 -6.1757 182 93 2 0 0 0 0.011671 7 62137 61345;61473;61605;61735;61868;62004;62137 75.761 35.878 1 1371000000 28917 2318 19346 19718 33971;33972;33973;33974;33975;33976;33977 33977 -0.0007679261682369543 KYEELQIT 8 Unmodified _KYEELQIT_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENSG00000185479|ENST00000252252|KRT6B ENSG00000167768|ENST00000252244|KRT1;ENSG00000185479|ENST00000252252|KRT6B ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2714233398438 2 512.27149 1022.52843 -0.10438 -5.3473E-05 1.3958 0.00071502 1.2914 0.00066155 512.2719124523817 38.025 0.20409 37.754 37.618 37.822 -0.27133 21 9 3 0 0 0 0.36898 1 20009 20009 47.749 7.799 1 2068800 + 28918 7667;9374 19347 19719 33978 33978 0.01806330486465413 KYEELYCFS 9 Unmodified _KYEELYCFS_ 0 0 0 nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5110778808594 3 394.510964 1180.51106 0.76229 0.00030073 -0.39368 -0.00015531 0.36861 0.00014542 394.5106924624073 75.421 0.36678 74.944 74.759 75.126 -0.47714 56 20 3 0 0 0 0.23158 2 41251 41251;41349 14.405 6.7964 1 7410300 28919 272 19348 19720 33979;33980 33979 -0.07197333110866566 KYEELYCFS 9 Unmodified _KYEELYCFS_ 0 0 0 nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 MSMS AL20221201_MKP_PDAC_01 4 394.5108947753906 3 394.510964 1180.51106 NaN NaN NaN NaN NaN NaN NaN 93.202 1 87.027 86.527 87.527 -6.1757 0 0 0 0.53226 1 61678 61678 10.151 1.7063 1 28920 272 19348 19720 33981 33981 -0.07197333110866566 KYEELYCFS 9 Unmodified _KYEELYCFS_ 0 0 0 nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 394.510964 1180.51106 0.15574 6.144E-05 -0.65465 -0.00025827 -0.49891 -0.00019683 394.5106254124618 75.061 0.12017 75.061 75.017 75.137 0 0.082259 -0.00059972 NaN 14.405 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 754320 28921 272 19348 19720 -0.07197333110866566 KYEELYCFS 9 Unmodified _KYEELYCFS_ 0 0 0 nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 nc|ENSG00000003987|Q9Y216-2|MTMR7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 394.510964 1180.51106 0.12182 4.8061E-05 0.78765 0.00031073 0.90947 0.0003588 394.51136005436376 74.885 0.27478 74.931 74.773 75.048 0.045967 -0.047514 0.0011073 NaN 14.405 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1720500 28922 272 19348 19720 -0.07197333110866566 KYEEYEEPTF 10 Unmodified _KYEEYEEPTF_ 0 0 0 REV__nc|ENSG00000188732|A4D161-2|FAM221A REV__nc|ENSG00000188732|A4D161-2|FAM221A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.2953491210938 2 667.792983 1333.57141 -0.06171 -4.121E-05 1.1262 0.00075205 1.0645 0.00071084 667.7936369826172 52.533 0.25415 52.533 52.423 52.678 0 19 11 2 0 0 0 0.67459 1 29090 29090 5.7319 0 1 2732400 + 28923 23725 19349 19721 33982 33982 -0.08202944246772859 KYEHQVLEF 9 Unmodified _KYEHQVLEF_ 0 0 0 REV__ENSG00000118503|ENST00000612899|TNFAIP3 REV__ENSG00000118503|ENST00000612899|TNFAIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3040771484375 2 596.803488 1191.59242 -0.35251 -0.00021038 -1.4753 -0.00088044 -1.8278 -0.0010908 596.802817163518 98.837 0.32095 92.661 92.52 92.841 -6.1757 32 23 2 0 0 0 0.18144 1 65658 65658 34.102 0 1 45397000 + 28924 19155 19350 19722 33983 33983 0.004291106434266112 KYENEVALRQ 10 Unmodified _KYENEVALRQ_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.2226257324219 3 417.222693 1248.64625 -0.41465 -0.000173 0.9387 0.00039165 0.52405 0.00021865 417.22282952908506 22.637 0.18541 22.637 22.528 22.714 0 12 8 2 0 0 0 0.69848 1 11527 11527 3.0723 1.33 1 600610 + 28925 169 19351 19723 33984 33984 0.03187283075135383 KYENEVALRQ 10 Unmodified _KYENEVALRQ_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3295288085938 2 625.330402 1248.64625 NaN NaN NaN NaN NaN NaN NaN 22.638 1 22.638 22.138 23.138 0 0 0 0 0.88161 1 11517 11517 13.615 10.018 1 + 28926 169 19351 19723 33985 33985 0.03187283075135383 KYENIYYF 8 Unmodified _KYENIYYF_ 0 0 0 REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2 REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5192565917969 3 380.518447 1138.53351 0.9617 0.00036594 1.675 0.00063738 2.6367 0.0010033 380.51878680675384 46.388 0.34642 41.307 41.036 41.383 -5.0805 57 23 3 0 0 0 0.77907 1 28581 28581 7.2892 0 1 28999000 + 28927 21119 19352 19724 33986 33986 -0.03021365650943153 KYERIFTLL 9 Unmodified _KYERIFTLL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8479614257812 2 591.847699 1181.68084 0.52181 0.00030883 -0.49109 -0.00029065 0.030715 1.8178E-05 591.8474709072929 65.203 0.2683 65.203 65.077 65.345 7.6294E-06 29 12 3 0 0 0 0.022653 1 35731 35731 65.474 23.518 1 10562000 28928 2065 19353 19725 33987 33987 0.09727150953904129 KYERIFTLL 9 Unmodified _KYERIFTLL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9019165039062 3 394.900891 1181.68084 1.5249 0.00060218 -0.4121 -0.00016274 1.1128 0.00043944 394.90097759703906 95.886 0.3101 89.71 89.552 89.862 -6.1757 40 18 3 0 0 0 0.40615 1 63469 63469 12.175 2.6308 1 16019000 28929 2065 19353 19725 33988 33988 0.09727150953904129 KYERIFTLL 9 Unmodified _KYERIFTLL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.848388671875 2 591.847699 1181.68084 1.1576 0.00068512 -0.21351 -0.00012637 0.94409 0.00055876 591.8478392311297 95.85 0.24839 89.674 89.569 89.817 -6.1757 26 14 2 0 0 0 0.065007 1 63488 63488 51.415 11.466 1 17804000 28930 2065 19353 19725 33989 33989 0.09727150953904129 KYERYEEL 8 Unmodified _KYERYEEL_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.188720703125 3 377.188989 1128.54514 1.0096 0.0003808 -0.13989 -5.2765E-05 0.86968 0.00032803 377.1889091032668 27.093 0.3646 24.056 23.816 24.18 -3.0365 31 18 2 0 0 0 0.72664 1 14940 14940 11.495 0 1 16762000 + 28931 17146 19354 19726 33990 33990 -0.013991686275630855 KYESIRLLF 9 Unmodified _KYESIRLLF_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.228759765625 3 390.229008 1167.66519 0.7984 0.00031156 -0.6326 -0.00024686 0.16579 6.4697E-05 390.2288521274283 64.252 0.31943 64.242 64.077 64.396 -0.010529 37 15 3 0 0 0 0.021948 1 35155 35155 49.742 19.038 1 7605700 28932 4688 19355 19727 33991 33991 0.08806864436837714 KYESIRLLF 9 Unmodified _KYESIRLLF_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8403930664062 2 584.839874 1167.66519 1.2275 0.00071789 -0.79966 -0.00046767 0.42785 0.00025022 584.8395517476937 64.276 0.30009 64.265 64.077 64.377 -0.010529 32 14 3 0 0 0 0.032796 1 35163 35163 53.833 19.431 1 11168000 28933 4688 19355 19727 33992 33992 0.08806864436837714 KYESIRLLF 9 Unmodified _KYESIRLLF_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8399658203125 2 584.839874 1167.66519 0.6999 0.00040933 0.25588 0.00014965 0.95578 0.00055898 584.8397359020023 93.683 0.23994 87.507 87.382 87.622 -6.1757 31 13 3 0 0 0 0.0087923 1 61983 61983 103.42 40.847 1 34254000 28934 4688 19355 19727 33993 33993 0.08806864436837714 KYESIRLLF 9 Unmodified _KYESIRLLF_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000474645.6_1_6:86215687-86217871:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2289428710938 3 390.229008 1167.66519 1.0637 0.00041507 0.55786 0.00021769 1.6215 0.00063276 390.2290427045704 93.676 0.23994 87.501 87.382 87.622 -6.1757 37 13 4 0 0 0 0.036857 1 61994 61994 40.725 13.502 1 28447000 28935 4688 19355 19727 33994 33994 0.08806864436837714 KYFALPHKI 9 Unmodified _KYFALPHKI_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8901062011719 3 372.890327 1115.64915 -0.022261 -8.3008E-06 0.52121 0.00019435 0.49895 0.00018605 372.89047805122885 38.017 0.5597 38.034 37.731 38.291 0.01704 79 25 4 0 0 0 0.15882 2 20117 20117;20219 27.223 16.399 1 49440000 28936 1361 19356 19728 33995;33996 33995 0.09595202990590224 KYFALPHKI 9 Unmodified _KYFALPHKI_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8316040039062 2 558.831852 1115.64915 0.35165 0.00019651 0.66648 0.00037245 1.0181 0.00056896 558.8318429601336 37.988 0.31063 38.005 37.859 38.17 0.01704 30 14 3 0 0 0 0.053952 1 20189 20189 47.749 28.492 1 2451800 28937 1361 19356 19728 33997 33997 0.09595202990590224 KYFALPHKI 9 Unmodified _KYFALPHKI_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8909912109375 3 372.890327 1115.64915 1.1941 0.00044527 -0.21847 -8.1464E-05 0.97564 0.00036381 372.89025594066294 77.506 0.72889 71.331 70.973 71.702 -6.1757 116 42 4 0 0 0 0.069655 4 50563 50563;50680;50808;50944 40.239 22.797 1 88551000 28938 1361 19356 19728 33998;33999;34000;34001 33998 0.09595202990590224 KYFALPHKI 9 Unmodified _KYFALPHKI_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MSMS AL20221201_MKP_PDAC_01 4 372.8900451660156 3 372.890327 1115.64915 NaN NaN NaN NaN NaN NaN NaN 77.122 1 70.946 70.446 71.446 -6.1757 0 0 0 0.13463 1 50437 50437 38.615 17.025 1 28939 1361 19356 19728 34002 34002 0.09595202990590224 KYFALPHKI 9 Unmodified _KYFALPHKI_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MSMS AL20221201_MKP_PDAC_01 4 558.8322143554688 2 558.831852 1115.64915 NaN NaN NaN NaN NaN NaN NaN 77.654 1 71.478 70.978 71.978 -6.1757 0 0 0 0.36855 1 50800 50800 29.082 9.8246 1 28940 1361 19356 19728 34003 34003 0.09595202990590224 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3240966796875 2 541.32386 1080.63317 0.24841 0.00013447 3.5331 0.0019125 3.7815 0.002047 541.3257413455467 48.856 0.62611 48.812 48.609 49.235 -0.04369 83 30 4 0 0 0 0.0071894 1 26317 26317 111.29 59.657 1 54642000 28941 2204 19357 19729 34004 34004 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.21826171875 3 361.218332 1080.63317 0.17416 6.291E-05 0.010419 3.7636E-06 0.18458 6.6674E-05 361.21832784143004 48.829 0.31783 48.785 48.609 48.927 -0.04369 45 15 4 0 0 0 0.012148 2 26318 26318;26431 57.722 36.132 1 35159000 28942 2204 19357 19729 34005;34006 34005 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2189331054688 3 361.218332 1080.63317 1.8997 0.00068619 -0.11913 -4.3033E-05 1.7805 0.00064316 361.2182902345333 53.83 0.38724 48.026 47.863 48.251 -5.8042 60 23 3 0 0 0 0.0095811 2 33985 33985;34121 63.961 45.587 1 44017000 28943 2204 19357 19729 34007;34008 34007 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3243408203125 2 541.32386 1080.63317 1.0928 0.00059154 -0.71391 -0.00038646 0.37885 0.00020508 541.3236141688119 53.852 0.42077 48.047 47.815 48.236 -5.8042 65 25 3 0 0 0 0.018301 1 34062 34062 65.235 21.463 1 54852000 28944 2204 19357 19729 34009 34009 0.09607496753687883 KYFAQALKL 9 Unmodified _KYFAQALKL_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2191772460938 3 361.218332 1080.63317 1.7116 0.00061827 0.14388 5.1972E-05 1.8555 0.00067024 361.21835390454214 79.023 0.95094 72.847 72.484 73.435 -6.1757 129 54 3 0 0 0 0.019303 4 51887 51620;51749;51887;52035 49.554 32.988 1 32801000 28945 2204 19357 19729 34010;34011;34012;34013 34012 0.09607496753687883 KYFAQEALTVL 11 Unmodified _KYFAQEALTVL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.8555297851562 2 641.855721 1281.69689 0.28688 0.00018414 0.22031 0.00014141 0.50719 0.00032554 641.8558054106459 71.385 0.22954 70.907 70.791 71.02 -0.47735 20 9 3 0 0 0 0.61596 1 39062 39062 17.443 8.6972 1 852900 28946 2336 19358 19730 34014 34014 0.06730812400110153 KYFATFEVF 9 Unmodified _KYFATFEVF_ 0 0 0 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 MSMS AL20221201_MKP_PDAC_01 4 576.29296875 2 576.292225 1150.5699 NaN NaN NaN NaN NaN NaN NaN 96.702 1 90.526 90.026 91.026 -6.1757 0 0 0 0.12343 1 64085 64085 39.95 5.8473 1 28947 2552 19359 19731 34015 34015 0.0006351124582124612 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.2744140625 2 647.274761 1292.53497 -0.67007 -0.00043372 0.045926 2.9727E-05 -0.62414 -0.00040399 647.2747347195669 34.81 0.24442 34.81 34.675 34.919 0 37 12 4 0 0 0 0.00023314 1 18329 18329 149.91 107.96 1 21929000 28948 3737 19360 19732 34016 34016 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.8519287109375 3 431.852266 1292.53497 -0.47075 -0.0002033 0.17071 7.3721E-05 -0.30004 -0.00012957 431.8522679981747 34.81 0.37896 34.81 34.54 34.919 0 50 19 4 0 0 0 0.06294 1 18330 18330 45.74 41.623 1 26601000 28949 3737 19360 19732 34017 34017 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.8526611328125 3 431.852266 1292.53497 -0.34405 -0.00014858 1.0851 0.00046862 0.74109 0.00032004 431.85281592626546 34.993 0.20422 34.77 34.669 34.873 -0.2224 21 8 3 0 0 0 0.14 1 18314 18314 27.223 23.636 1 2531500 28950 3737 19360 19732 34018 34018 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.2756958007812 2 647.274761 1292.53497 -0.4489 -0.00029056 1.0107 0.00065417 0.56176 0.00036361 647.2756517285077 35.003 0.206 34.781 34.646 34.852 -0.2224 14 8 2 0 0 0 0.010301 1 18327 18327 79.596 66.554 1 2807400 28951 3737 19360 19732 34019 34019 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.2744140625 2 647.274761 1292.53497 0.63192 0.00040903 -0.047812 -3.0947E-05 0.58411 0.00037808 647.2745386242838 39.614 0.36142 35.163 34.964 35.325 -4.4509 54 22 3 0 0 0 1.6646999999999999E-28 2 23451 23451;23586 208.15 146.54 1 52454000 28952 3737 19360 19732 34020;34021 34020 -0.09959776352798144 KYFDEHYEY 9 Unmodified _KYFDEHYEY_ 0 0 0 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 ENSG00000123975|ENST00000314355|CKS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8523864746094 3 431.852266 1292.53497 0.82328 0.00035553 0.26171 0.00011302 1.085 0.00046855 431.8523042001033 39.608 0.37877 35.157 34.946 35.325 -4.4509 68 23 4 0 0 0 0.05447 2 23585 23456;23585 47.594 37.279 1 64083000 28953 3737 19360 19732 34022;34023 34023 -0.09959776352798144 KYFDKVVTL 9 Unmodified _KYFDKVVTL_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3233032226562 2 556.82115 1111.62775 0.53597 0.00029844 -0.78794 -0.00043874 -0.25197 -0.0001403 556.8204651900721 48.682 0.22646 48.31 48.143 48.369 -0.37172 22 12 2 0 0 0 0.037253 1 26083 26083 51.415 25.147 1 9340600 28954 7533 19361 19733 34024 34024 0.07639773171240449 KYFDKVVTL 9 Unmodified _KYFDKVVTL_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8215942382812 2 556.82115 1111.62775 0.61779 0.000344 -0.37606 -0.0002094 0.24173 0.0001346 556.8209820410304 48.316 0.2562 48.277 48.164 48.42 -0.038643 28 12 3 0 0 0 0.010301 1 26030 26030 79.596 43.469 1 12448000 28955 7533 19361 19733 34025 34025 0.07639773171240449 KYFDKVVTL 9 Unmodified _KYFDKVVTL_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8251342773438 2 556.82115 1111.62775 1.1568 0.00064411 2.7752 0.0015453 3.9319 0.0021894 556.823400077618 54.435 0.33046 48.57 48.383 48.713 -5.8653 55 20 3 0 0 0 0.098164 1 34497 34497 33.445 11.908 1 46512000 28956 7533 19361 19733 34026 34026 0.07639773171240449 KYFDKVVTL 9 Unmodified _KYFDKVVTL_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.5382080078125 3 371.549859 1111.62775 1.6422 0.00061016 1.0407 0.00038666 2.6829 0.00099682 371.5500875615889 54.434 0.34377 48.569 48.354 48.698 -5.8653 49 21 3 0 0 0 0.17716 1 34566 34566 22.658 9.0432 1 21618000 28957 7533 19361 19733 34027 34027 0.07639773171240449 KYFDNSQSL 9 Unmodified _KYFDNSQSL_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2637939453125 2 551.264196 1100.51384 NaN NaN NaN NaN NaN NaN NaN 34.786 1 34.786 34.286 35.286 0 0 0 0 0.02218 1 18352 18352 75.761 21.928 1 28958 16031 19362 19734 34028 34028 -0.03239741661673179 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.216796875 3 411.216768 1230.62847 0.094807 3.8986E-05 0.48407 0.00019906 0.57888 0.00023804 411.21688534090816 46.752 0.27264 46.752 46.585 46.858 0 42 12 4 0 0 0 0.08691 1 25521 25521 33.445 8.4539 1 31615000 28959 5878 19363 19735 34029 34029 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3215942382812 2 616.321514 1230.62847 0.4792 0.00029534 0.16814 0.00010363 0.64735 0.00039897 616.321535275171 46.759 0.27264 46.759 46.585 46.858 0 33 12 4 0 0 0 0.011291 1 25531 25531 76.825 34.985 1 13019000 28960 5878 19363 19735 34030 34030 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.2168579101562 3 411.216768 1230.62847 0.66327 0.00027275 -0.086518 -3.5577E-05 0.57675 0.00023717 411.21669349684606 46.986 0.37089 46.65 46.462 46.833 -0.33664 69 18 5 0 0 0 0.03568 2 25220 25111;25220 55.503 38.454 1 132690000 28961 5878 19363 19735 34031;34032 34032 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3219604492188 2 616.321514 1230.62847 0.78766 0.00048545 -0.18504 -0.00011404 0.60262 0.00037141 616.3212434969345 46.974 0.33196 46.637 46.462 46.794 -0.33664 49 16 4 0 0 0 0.0085366 2 25122 25122;25222 90.135 27.936 1 41968000 28962 5878 19363 19735 34033;34034 34033 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.217041015625 3 411.216768 1230.62847 1.1566 0.00047563 -0.25093 -0.00010319 0.9057 0.00037244 411.21662010188356 46.735 0.2848 46.702 46.529 46.814 -0.033417 40 13 4 0 0 0 0.08691 1 25115 25115 33.445 20.589 1 44175000 28963 5878 19363 19735 34035 34035 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3226928710938 2 616.321514 1230.62847 1.6056 0.00098956 -0.43301 -0.00026687 1.1726 0.00072269 616.3212215991006 46.724 0.20174 46.69 46.572 46.774 -0.033421 32 9 4 0 0 0 0.0099157 1 25125 25125 80.676 44.17 1 15494000 28964 5878 19363 19735 34036 34036 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2169799804688 3 411.216768 1230.62847 0.57839 0.00023784 0.20148 8.2854E-05 0.77987 0.0003207 411.2167695040804 51.954 0.41846 46.22 46.019 46.437 -5.7345 73 28 3 0 0 0 0.07087 2 32648 32648;32793 30.703 13.261 1 208560000 28965 5878 19363 19735 34037;34038 34037 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.8232421875 2 616.321514 1230.62847 0.26279 0.00016196 0.46668 0.00028763 0.72948 0.00044959 616.3217543794783 51.917 0.46524 46.182 46.004 46.469 -5.7345 89 31 4 0 0 0 0.0025703 2 32670 32670;32815 128.93 68.859 1 275210000 28966 5878 19363 19735 34039;34040 34039 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.32177734375 2 616.321514 1230.62847 0.63128 0.00038907 2.5782 0.001589 3.2095 0.0019781 616.3217411900002 68.35 0.68279 62.174 61.992 62.675 -6.1757 85 39 3 0 0 0 0.01958 2 44572 44572;44776 63.961 29.559 1 36143000 28967 5878 19363 19735 34041;34042 34041 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2174987792969 3 411.216768 1230.62847 NaN NaN NaN NaN NaN NaN NaN 67.883 1 61.708 61.208 62.208 -6.1757 0 0 0 0.22437 1 44260 44260 33.445 25.001 1 28968 5878 19363 19735 34043 34043 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2174072265625 3 411.216768 1230.62847 NaN NaN NaN NaN NaN NaN NaN 68.099 1 61.924 61.424 62.424 -6.1757 0 0 0 0.32177 1 44422 44422 22.658 5.2154 1 28969 5878 19363 19735 34044 34044 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2168579101562 3 411.216768 1230.62847 NaN NaN NaN NaN NaN NaN NaN 68.357 1 62.181 61.681 62.681 -6.1757 0 0 0 0.12343 1 44613 44613 37.075 14.417 1 28970 5878 19363 19735 34045 34045 0.02238567820290882 KYFEKQFEL 9 Unmodified _KYFEKQFEL_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2166442871094 3 411.216768 1230.62847 NaN NaN NaN NaN NaN NaN NaN 68.552 1 62.376 61.876 62.876 -6.1757 0 0 0 0.098163 1 44753 44753 47.594 28.232 1 28971 5878 19363 19735 34046 34046 0.02238567820290882 KYFEVPSVL 9 Unmodified _KYFEVPSVL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.3004150390625 2 541.30005 1080.58555 -0.21569 -0.00011675 1.0016 0.00054216 0.78589 0.0004254 541.3005456273352 69.457 0.45861 68.978 68.764 69.223 -0.47903 75 19 5 0 0 0 0.017075 2 38001 37900;38001 66.457 26.499 1 34674000 28972 4361 19364 19736 34047;34048 34048 0.04847797762840855 KYFEVPSVL 9 Unmodified _KYFEVPSVL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3006591796875 2 541.30005 1080.58555 0.6014 0.00032554 0.34465 0.00018656 0.94605 0.0005121 541.3002192607532 68.935 0.35773 68.96 68.748 69.106 0.025154 52 16 4 0 0 0 0.020973 2 37817 37817;37922 62.573 30.267 1 34389000 28973 4361 19364 19736 34049;34050 34049 0.04847797762840855 KYFEVPSVLL 10 Unmodified _KYFEVPSVLL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3450317382812 2 597.842082 1193.66961 0.65461 0.00039135 0.18589 0.00011113 0.8405 0.00050248 597.8420199682645 82.522 0.38692 82.027 81.819 82.205 -0.4952 44 15 4 0 0 0 0.14688 2 45130 45130;45227 40.239 22.093 1 6160700 28974 4361 19365 19737 34051;34052 34051 0.08052328859753288 KYFEVPSVLL 10 Unmodified _KYFEVPSVLL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.84228515625 2 597.842082 1193.66961 1.6637 0.00099464 -1.0846 -0.00064842 0.57911 0.00034622 597.8413165265133 81.898 0.53654 81.958 81.636 82.172 0.059929 59 21 4 0 0 0 0.043225 1 45314 45314 61.602 42.345 1 99011000 28975 4361 19365 19737 34053 34053 0.08052328859753288 KYFEVPSVLL 10 Unmodified _KYFEVPSVLL_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8463134765625 2 597.842082 1193.66961 0.80499 0.00048125 0.81816 0.00048913 1.6231 0.00097039 597.842465963514 98.39 0.22172 92.214 92.102 92.324 -6.1757 55 14 5 0 0 0 0.047829 1 65213 65213 59.368 24.967 1 687650000 28976 4361 19365 19737 34054 34054 0.08052328859753288 KYFGGVLEYF 10 Unmodified _KYFGGVLEYF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8125 2 611.810782 1221.60701 0.80688 0.00049366 0.56422 0.00034519 1.3711 0.00083885 611.8111820274372 81.606 0.35732 81.111 80.929 81.287 -0.4952 46 14 4 0 0 0 0.16361 2 44642 44642;44748 38.176 18.919 1 5135000 28977 7171 19366 19738 34055;34056 34055 0.005071827915571703 KYFGGVLEYF 10 Unmodified _KYFGGVLEYF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8109130859375 2 611.810782 1221.60701 0.67774 0.00041465 -0.66127 -0.00040457 0.016462 1.0072E-05 611.8103135655889 80.609 0.64018 80.666 80.495 81.135 0.057587 68 25 4 0 0 0 0.16361 2 44635 44515;44635 38.176 23.337 1 114340000 28978 7171 19366 19738 34057;34058 34058 0.005071827915571703 KYFGGVLEYF 10 Unmodified _KYFGGVLEYF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3;ENST00000504949.1_1_5:95067575-95091515:+|nuORF ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.81103515625 2 611.810782 1221.60701 0.43096 0.00026367 0.060032 3.6728E-05 0.49099 0.00030039 611.8108476011037 98.683 0.17464 92.507 92.401 92.576 -6.1757 45 12 5 0 0 0 0.11824 1 65459 65459 43.772 23.319 1 667630000 28979 7171 19366 19738 34059 34059 0.005071827915571703 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.5347290039062 3 370.534543 1108.5818 0.63171 0.00023407 -0.1251 -4.6352E-05 0.50661 0.00018772 370.5344647160243 29.644 0.82871 29.563 29.066 29.895 -0.080429 101 42 4 0 0 0 0.010712 3 15408 15190;15303;15408 78.149 56.559 1 85969000 28980 1194;6202;5189 19367 19739 34060;34061;34062 34062 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.5345458984375 3 370.534543 1108.5818 -0.0063905 -2.3679E-06 -0.22176 -8.2171E-05 -0.22815 -8.4538E-05 370.5344721641454 29.447 0.89648 29.477 28.943 29.84 0.030104 117 40 4 0 0 0 0.068777 3 15298 15194;15298;15404 52.268 34.122 1 154760000 28981 1194;6202;5189 19367 19739 34063;34064;34065 34064 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2982788085938 2 555.298176 1108.5818 0.21289 0.00011822 -0.19406 -0.00010776 0.01883 1.0456E-05 555.2983687218224 29.43 0.08617 29.461 29.402 29.488 0.030106 5 4 2 0 0 0 0.078417 1 15365 15365 38.151 22.304 1 4788700 28982 1194;6202;5189 19367 19739 34066 34066 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.5350646972656 3 370.534543 1108.5818 1.2066 0.0004471 0.11865 4.3966E-05 1.3253 0.00049107 370.5345993816837 33.14 1.2975 29.284 28.319 29.617 -3.8562 215 76 4 0 0 0 0.010712 5 18785 18647;18785;18911;19036;19152 78.149 65.107 1 479840000 28983 1194;6202;5189 19367 19739 34067;34068;34069;34070;34071 34068 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7991943359375 2 555.298176 1108.5818 0.67934 0.00037724 -1.1675 -0.0006483 -0.48813 -0.00027106 555.297410857971 33.09 0.50317 29.234 29.028 29.531 -3.8562 55 31 2 0 0 0 0.0081063 3 18885 18885;19007;19138 93.883 67.89 1 40199000 28984 1194;6202;5189 19367 19739 34072;34073;34074 34072 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20221201_MKP_PDAC_01 4 370.5346374511719 3 370.534543 1108.5818 NaN NaN NaN NaN NaN NaN NaN 59.746 1 53.631 53.131 54.131 -6.1147 0 0 0 0.029345 1 38387 38387 58.679 42.113 1 28985 1194;6202;5189 19367 19739 34075 34075 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20221201_MKP_PDAC_01 4 370.5347595214844 3 370.534543 1108.5818 NaN NaN NaN NaN NaN NaN NaN 59.928 1 53.813 53.313 54.313 -6.1147 0 0 0 0.010944 1 38530 38530 68.081 51.515 1 28986 1194;6202;5189 19367 19739 34076 34076 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20221201_MKP_PDAC_01 4 370.5351867675781 3 370.534543 1108.5818 NaN NaN NaN NaN NaN NaN NaN 60.116 1 54.002 53.502 54.502 -6.1147 0 0 0 0.019976 1 38664 38664 58.679 45.064 1 28987 1194;6202;5189 19367 19739 34077 34077 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20221201_MKP_PDAC_01 4 370.5348510742188 3 370.534543 1108.5818 NaN NaN NaN NaN NaN NaN NaN 60.67 1 54.522 54.022 55.022 -6.1478 0 0 0 0.029345 1 39047 39047 58.679 43.43 1 28988 1194;6202;5189 19367 19739 34078 34078 0.031851727796492924 KYFHPPAHL 9 Unmodified _KYFHPPAHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 370.534543 1108.5818 -0.35578 -0.00013183 1.8767 0.00069539 1.521 0.00056356 370.5352592298081 29.434 0.081419 29.434 29.37 29.451 0 -0.0058753 0.0020629 NaN 78.149 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 374960 28989 1194;6202;5189 19367 19739 0.031851727796492924 KYFIGLIY 8 Unmodified _KYFIGLIY_ 0 0 0 nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A nc|ENSG00000258227|Q9NY25-2|CLEC5A nc|ENSG00000258227|Q9NY25-2|CLEC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2965393066406 2 508.794404 1015.57425 0.10995 5.5942E-05 0.84572 0.0004303 0.95567 0.00048624 509.2964799236396 77.117 0.62026 70.941 70.6 71.221 -6.1757 45 34 2 0 0 0 0.44122 2 50479 50352;50479 40.449 8.3316 1 10932000 28990 10815 19368 19740 34079;34080 34080 0.06709020459379644 KYFITHTFL 9 Unmodified _KYFITHTFL_ 0 0 0 REV__ENSG00000138653|ENST00000264363|NDST4;REV__nc|ENSG00000164100|O95803-3|NDST3 REV__nc|ENSG00000164100|O95803-3|NDST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8200073242188 2 585.321317 1168.62808 -0.058274 -3.4109E-05 -1.4365 -0.00084084 -1.4948 -0.00087495 585.3203959754352 55.869 0.42696 55.8 55.497 55.924 -0.068737 50 22 4 0 0 0 0.47846 1 30287 30287 13.508 4.9146 1 25581000 + 28991 21868;20351 19369 19741 34081 34081 0.05051192891073697 KYFITHTFL 9 Unmodified _KYFITHTFL_ 0 0 0 REV__ENSG00000138653|ENST00000264363|NDST4;REV__nc|ENSG00000164100|O95803-3|NDST3 REV__nc|ENSG00000164100|O95803-3|NDST3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8200073242188 2 585.321317 1168.62808 -0.058274 -3.4109E-05 -1.4365 -0.00084084 -1.4948 -0.00087495 585.3203959754352 55.869 0.42696 55.8 55.497 55.924 -0.068737 50 22 4 0 0 0 0.19298 1 30287 30287 13.508 4.9146 1 25581000 + 28992 21868;20351 19369 19741 34082 34082 0.05051192891073697 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.840087890625 2 568.839342 1135.66413 0.97232 0.00055309 0.10123 5.7585E-05 1.0736 0.00061068 568.8393866090302 49.872 0.27438 49.48 49.313 49.588 -0.3923 43 13 4 0 0 0 0.018061 1 26793 26793 65.474 38.59 1 36204000 28993 5661 19370 19742 34083 34083 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5623779296875 3 379.561987 1135.66413 0.81143 0.00030799 -0.038717 -1.4695E-05 0.77271 0.00029329 379.5619972837496 49.866 0.27438 49.474 49.313 49.588 -0.3923 33 13 3 0 0 0 0.070838 1 26798 26798 43.772 23.358 1 16795000 28994 5661 19370 19742 34084 34084 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8401489257812 2 568.839342 1135.66413 0.88605 0.00050402 -0.64334 -0.00036596 0.24271 0.00013806 568.838925793416 49.533 0.45364 49.484 49.31 49.763 -0.048828 67 22 4 0 0 0 0.0081887 2 26708 26708;26809 93.166 58.764 1 79497000 28995 5661 19370 19742 34085;34086 34085 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5615234375 3 379.561987 1135.66413 0.77473 0.00029406 -1.5463 -0.00058692 -0.77158 -0.00029286 379.5616282278592 49.527 0.61322 49.478 49.17 49.784 -0.048824 77 30 4 0 0 0 0.047196 1 26730 26730 41.956 26.707 1 43365000 28996 5661 19370 19742 34087 34087 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5624084472656 3 379.561987 1135.66413 1.6051 0.00060925 -0.027131 -1.0298E-05 1.578 0.00059895 379.5619940531128 55.149 0.50481 49.228 49.003 49.507 -5.9211 75 31 3 0 0 0 0.070838 2 34967 34967;35103 29.841 16.968 1 114520000 28997 5661 19370 19742 34088;34089 34088 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8416748046875 2 568.839342 1135.66413 1.264 0.00071901 -0.2037 -0.00011587 1.0603 0.00060314 568.8391117431569 55.125 0.47062 49.204 48.973 49.444 -5.9211 84 29 4 0 0 0 0.098164 1 35210 35210 33.445 17.598 1 209990000 28998 5661 19370 19742 34090 34090 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8405151367188 2 568.839342 1135.66413 1.2556 0.00071424 0.80226 0.00045635 2.0579 0.0011706 568.839805757264 80.04 1.2221 73.865 72.93 74.152 -6.1757 171 72 3 0 0 0 0.0085366 3 52561 52299;52430;52561 90.135 51.984 1 55928000 28999 5661 19370 19742 34091;34092;34093 34093 0.10172650067943323 KYFLKPEVL 9 Unmodified _KYFLKPEVL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MSMS AL20221201_MKP_PDAC_01 4 379.5625305175781 3 379.561987 1135.66413 NaN NaN NaN NaN NaN NaN NaN 79.788 1 73.612 73.112 74.112 -6.1757 0 0 0 0.6557 1 52314 52314 10.8 5.5026 1 29000 5661 19370 19742 34094 34094 0.10172650067943323 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5571899414062 3 430.557013 1288.64921 1.0904 0.00046948 -1.3988 -0.00060226 -0.30839 -0.00013278 430.55701863677587 91.02 0.73628 84.844 84.34 85.076 -6.1757 84 43 3 0 0 0 0.31356 2 60200 60069;60200 16.566 11.85 1 20107000 29001 6289 19371 19743 34095;34096 34096 0.016431581999313494 KYFLWEEKF 9 Unmodified _KYFLWEEKF_ 0 0 0 ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP ENSG00000154016|ENST00000284154|GRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3324584960938 2 645.331882 1288.64921 0.75907 0.00048985 -0.13262 -8.5581E-05 0.62646 0.00040427 645.3318677807092 91.086 0.3041 84.91 84.723 85.028 -6.1757 26 17 2 0 0 0 0.0087259 1 60139 60139 121.35 96.355 1 7936800 29002 6289 19371 19743 34097 34097 0.016431581999313494 KYFLWVVKF 9 Unmodified _KYFLWVVKF_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5752868652344 3 410.574227 1228.70085 1.4124 0.00057988 -0.067551 -2.7735E-05 1.3448 0.00055214 410.57416201360627 81.571 0.45992 81.631 81.425 81.885 0.059929 55 17 4 0 0 0 0.029718 2 45055 45055;45159 55.503 55.503 1 29055000 29003 8714 19372 19744 34098;34099 34098 0.09564946684486131 KYFLWVVKF 9 Unmodified _KYFLWVVKF_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3587646484375 2 615.357702 1228.70085 1.8672 0.001149 -0.16184 -9.9588E-05 1.7054 0.0010494 615.3574311906384 81.582 0.45992 81.642 81.425 81.885 0.059929 65 17 5 0 0 0 0.0082981 2 45067 45067;45172 131.27 109.73 1 55086000 29004 8714 19372 19744 34100;34101 34100 0.09564946684486131 KYFLWVVKF 9 Unmodified _KYFLWVVKF_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.3579711914062 2 615.357702 1228.70085 0.88391 0.00054392 -0.74669 -0.00045948 0.13722 8.4439E-05 615.3569558845173 99.355 0.14608 93.179 93.097 93.243 -6.1757 30 9 4 0 0 0 0.0061279 1 66107 66107 139.14 102.63 1 214360000 29005 8714 19372 19744 34102 34102 0.09564946684486131 KYFLWVVKF 9 Unmodified _KYFLWVVKF_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5744323730469 3 410.574227 1228.70085 1.1699 0.00048034 -0.69766 -0.00028644 0.47226 0.0001939 410.908383479051 99.365 0.13062 93.189 93.097 93.228 -6.1757 20 8 3 0 0 0 0.069655 1 66131 66131 40.239 40.239 1 104770000 29006 8714 19372 19744 34103 34103 0.09564946684486131 KYFNQIVGF 9 Unmodified _KYFNQIVGF_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2986450195312 2 558.297842 1114.58113 1.0353 0.00057799 0.4876 0.00027222 1.5229 0.00085021 558.2981838593246 64.64 0.3373 64.636 64.44 64.777 -0.0032654 38 16 4 0 0 0 0.052168 1 35374 35374 44.407 14.182 1 19823000 29007 5578 19373 19745 34104 34104 0.028423333399359763 KYFPSRVSI 9 Unmodified _KYFPSRVSI_ 0 0 0 nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4;ENST00000451333.1_1_2:71037932-71038202:-|nuORF nc|ENSG00000115540|Q9Y3A3-2|MOB4 nc|ENSG00000115540|Q9Y3A3-2|MOB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8113403320312 2 548.811116 1095.60768 0.40741 0.00022359 -0.035148 -1.929E-05 0.37227 0.0002043 548.8110909339437 40.164 0.35517 40.169 40.026 40.382 0.0050545 42 16 3 0 0 0 0.0087923 2 21379 21379;21477 81.89 5.1013 1 9548700 29008 3134 19374 19746 34105;34106 34105 0.0637002223129457 KYFPSRVSI 9 Unmodified _KYFPSRVSI_ 0 0 0 nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4;ENST00000451333.1_1_2:71037932-71038202:-|nuORF nc|ENSG00000115540|Q9Y3A3-2|MOB4 nc|ENSG00000115540|Q9Y3A3-2|MOB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.210205078125 3 366.209836 1095.60768 1.1121 0.00040725 0.5436 0.00019907 1.6557 0.00060632 366.2099305441482 45.044 0.44196 40.192 39.959 40.401 -4.852 54 28 3 0 0 0 0.026499 2 27548 27548;27701 57.249 31.85 1 22156000 29009 3134 19374 19746 34107;34108 34107 0.0637002223129457 KYFQGDLQLF 10 Unmodified _KYFQGDLQLF_ 0 0 0 ENSG00000005882|ENST00000503176|PDK2;ENST00000512204.5_1_17:48185497-48187458:+|nuORF;nc|ENSG00000005882|Q15119-2|PDK2 ENSG00000005882|ENST00000503176|PDK2 ENSG00000005882|ENST00000503176|PDK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8262939453125 2 629.826963 1257.63937 0.048401 3.0484E-05 -0.35369 -0.00022277 -0.30529 -0.00019228 629.8268373628301 93.441 0.45638 87.265 86.995 87.451 -6.1757 57 33 2 0 0 0 0.016642 2 61807 61680;61807 78.728 29.174 1 24278000 29010 318 19375 19747 34109;34110 34110 0.02085970194548281 KYFQRGYCI 9 Carbamidomethyl (C) _KYFQRGYC(Carbamidomethyl (C))I_ KYFQRGYC(1)I KYFQRGYC(64)I 0 1 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3081665039062 2 617.805508 1233.59646 0.95606 0.00059066 -0.4078 -0.00025194 0.54826 0.00033872 617.8053794143675 37.84 0.23273 33.471 33.348 33.581 -4.3689 17 13 2 0 0 0 0.019303 1 22251 22251 64.236 38.837 1 5533000 29011 4521 19376 19748 34111 34111 463 -0.010991231345087726 KYFSCGRESF 10 Carbamidomethyl (C) _KYFSC(Carbamidomethyl (C))GRESF_ KYFSC(1)GRESF KYFSC(47)GRESF 0 1 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5304870605469 3 427.529129 1279.56556 0.74626 0.00031905 -0.17617 -7.5318E-05 0.57009 0.00024373 427.5295632331329 35.442 0.25648 31.249 31.111 31.367 -4.1928 30 15 3 0 0 0 0.098202 1 20599 20599 47.053 37.809 1 12379000 29012 9902 19377 19749 34112 34112 902 -0.06304321239417732 KYFSDGSSNTF 11 Unmodified _KYFSDGSSNTF_ 0 0 0 nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3 nc|ENSG00000132640|Q9Y2F9-2|BTBD3 nc|ENSG00000132640|Q9Y2F9-2|BTBD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.7789916992188 2 626.777667 1251.54078 NaN NaN NaN NaN NaN NaN NaN 37.347 1 37.347 36.847 37.847 0 0 0 0 0.054406 1 19859 19859 61.09 44.941 1 29013 4430 19378 19750 34113 34113 -0.07492677841150908 KYFSLPSVVF 10 Unmodified _KYFSLPSVVF_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8295288085938 2 593.828975 1185.6434 -0.40029 -0.00023771 1.0088 0.00059903 0.60847 0.00036132 593.829478111693 85.834 0.23112 85.896 85.752 85.983 0.061638 20 9 3 0 0 0 0.06987 2 47524 47515;47524 53.404 30.668 1 44608000 29014 10696;10680 19379 19751 34114;34115 34115 0.058000596882720856 KYFSLPSVVF 10 Unmodified _KYFSLPSVVF_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8301391601562 2 593.828975 1185.6434 0.20485 0.00012165 0.53325 0.00031666 0.7381 0.00043831 593.8292168629408 99.09 0.16678 92.914 92.807 92.974 -6.1757 31 9 4 0 0 0 0.035244 1 65852 65852 65.474 42.737 1 466410000 29015 10696;10680 19379 19751 34116 34116 0.058000596882720856 KYFSQASSL 9 Unmodified _KYFSQASSL_ 0 0 0 ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226 ENST00000588883.5_1_19:44679604-44681824:+|nuORF ENST00000588883.5_1_19:44679604-44681824:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.763671875 2 515.763832 1029.51311 NaN NaN NaN NaN NaN NaN NaN 40.772 1 36.242 35.742 36.742 -4.5294 0 0 0 0.0084204 1 24391 24391 96.111 41.337 1 29016 7605 19380 19752 34117 34117 -0.00046536310719602625 KYFSSMAEF 9 Oxidation (M) _KYFSSM(Oxidation (M))AEF_ KYFSSM(1)AEF KYFSSM(52)AEF 0 0 1 ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54631532-54634860:+|nuORF ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2493896484375 2 563.2497 1124.48485 -0.073888 -4.1618E-05 -0.38634 -0.0002176 -0.46022 -0.00025922 563.2496553967127 41.872 0.3065 41.565 41.454 41.761 -0.30682 22 14 3 0 0 0 0.036857 1 22259 22259 51.63 22.548 1 6731800 29017 2342 19381 19753 34118 34118 407 -0.07241602282306303 KYFSSMAEF 9 Oxidation (M) _KYFSSM(Oxidation (M))AEF_ 0 0 1 ENSG00000105618|ENST00000321030|PRPF31;ENST00000466404.5_1_19:54631532-54634860:+|nuORF ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.2497 1124.48485 -0.22265 -0.00012541 1.1763 0.00066253 0.95362 0.00053712 563.2507014982241 41.495 0.47081 41.495 41.218 41.689 0 -0.034801 0.00099893 NaN 51.63 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 13840000 29018 2342 19381 19753 407 -0.07241602282306303 KYFTQFCVKF 10 Carbamidomethyl (C) _KYFTQFC(Carbamidomethyl (C))VKF_ KYFTQFC(1)VKF KYFTQFC(41)VKF 0 1 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000570359.1_1_17:440266-440455:-|nuORF nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.5659790039062 3 456.565403 1366.67438 1.0901 0.00049771 0.13612 6.2149E-05 1.2262 0.00055986 456.5654345338102 88.621 0.3614 82.446 82.292 82.653 -6.1757 25 19 2 0 0 0 0.1379 1 58463 58463 41.347 38.912 1 10233000 29019 5308 19382 19754 34119 34119 547 0.005708897308295491 KYFYIQMQI 9 Oxidation (M) _KYFYIQM(Oxidation (M))QI_ KYFYIQM(1)QI KYFYIQM(46)QI 0 0 1 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8203125 2 625.317917 1248.62128 0.45102 0.00028203 0.75404 0.00047151 1.2051 0.00075354 625.3181624110368 54.692 0.22221 54.625 54.523 54.746 -0.066936 25 10 3 0 0 0 0.047196 1 29706 29706 46.021 25.567 1 3026800 29020 8680 19383 19755 34120 34120 1466 0.006915119481845977 KYFYIQMQI 9 Oxidation (M) _KYFYIQM(Oxidation (M))QI_ KYFYIQM(1)QI KYFYIQM(52)QI 0 0 1 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.318603515625 2 625.317917 1248.62128 0.535 0.00033455 -0.51455 -0.00032176 0.020447 1.2786E-05 625.317738698347 54.961 0.23581 54.892 54.744 54.98 -0.068741 27 11 3 0 0 0 0.03568 1 29841 29841 52.268 23.774 1 3901500 29021 8680 19383 19755 34121 34121 1466 0.006915119481845977 KYGAHIRT 8 Unmodified _KYGAHIRT_ 0 0 0 REV__nc|ENSG00000128610|A0PJY2-3|FEZF1 REV__nc|ENSG00000128610|A0PJY2-3|FEZF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2669982910156 2 473.266876 944.519199 1.1625 0.00055016 -1.212 -0.00057361 -0.049552 -2.3452E-05 473.2664774829952 21.237 0.29112 18.544 18.371 18.662 -2.693 35 18 3 0 0 0 0.66338 1 11404 11404 20.454 2.3186 1 10420000 + 29022 29627 19384 19756 34122 34122 0.044720267114598755 KYGALVFVSI 10 Unmodified _KYGALVFVSI_ 0 0 0 REV__ENSG00000168917|ENST00000446465|SLC35G2 REV__ENSG00000168917|ENST00000446465|SLC35G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2218322753906 3 366.21822 1095.63283 1.3443 0.0004923 3.8809 0.0014213 5.2252 0.0019136 366.21922083939216 50.136 0.28328 50.088 49.927 50.21 -0.048824 39 13 4 0 0 0 0.41822 1 27086 27086 20.581 4.0151 1 4958500 + 29023 22360 19385 19757 34123 34123 0.0888407703384928 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2739868164062 2 513.274367 1024.53418 0.40693 0.00020887 0.25973 0.00013332 0.66667 0.00034218 513.2740994936321 46.359 0.25191 46.022 45.86 46.112 -0.33664 39 12 4 0 0 0 0.031062 1 24791 24791 54.774 22.468 1 17790000 29024 3310 19386 19758 34124 34124 0.02289473788800933 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2766723632812 2 513.274367 1024.53418 0.76874 0.00039457 0.39084 0.00020061 1.1596 0.00059518 513.2747956101312 46.05 0.26093 46.022 45.905 46.166 -0.028011 26 11 4 0 0 0 0.070838 1 24745 24745 39.957 7.6518 1 5585400 29025 3310 19386 19758 34125 34125 0.02289473788800933 KYGALVNNF 9 Unmodified _KYGALVNNF_ 0 0 0 ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENSG00000117481|ENST00000474844|NSUN4 ENST00000495427.1_2_1:46810505-46812688:+|nuORF ENST00000495427.1_2_1:46810505-46812688:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2750854492188 2 513.274367 1024.53418 0.45632 0.00023422 0.20507 0.00010526 0.66139 0.00033947 513.2743834792619 51.682 0.38858 46.033 45.833 46.222 -5.649 43 24 3 0 0 0 0.044011 2 32622 32496;32622 47.749 7.8698 1 72171000 29026 3310 19386 19758 34126;34127 34127 0.02289473788800933 KYGCVDYW 8 Carbamidomethyl (C) _KYGC(Carbamidomethyl (C))VDYW_ KYGC(1)VDYW KYGC(67)VDYW 0 1 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7374267578125 2 545.73676 1089.45897 0.72791 0.00039725 -0.43641 -0.00023817 0.29149 0.00015908 545.7366493042632 51.402 0.38675 45.753 45.558 45.945 -5.649 46 23 3 0 0 0 0.21583 2 32408 32285;32408 67.344 20.423 1 75971000 29027 10861 19387 19759 34128;34129 34129 958 -0.0821845173395559 KYGDIIFDF 9 Unmodified _KYGDIIFDF_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7828369140625 2 559.281857 1116.54916 0.84663 0.00047351 0.93652 0.00052378 1.7832 0.00099729 559.2830317562374 98.59 0.11469 92.414 92.378 92.493 -6.1757 12 8 2 0 0 0 0.078314 1 65468 65468 38.176 8.335 1 18539000 29028 7273 19388 19760 34130 34130 -0.004450791338513227 KYGDLLGHLKI 11 Unmodified _KYGDLLGHLKI_ 0 0 0 ENSG00000102805|ENST00000377453|CLN5 ENSG00000102805|ENST00000377453|CLN5 ENSG00000102805|ENST00000377453|CLN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5844116210938 3 419.583562 1255.72886 0.7183 0.00030139 0.86309 0.00036214 1.5814 0.00066352 419.5838112253948 57.605 0.27786 57.539 57.397 57.675 -0.066036 29 13 3 0 0 0 0.10354 1 31348 31348 42.068 33.781 1 3625600 29029 2067 19389 19761 34131 34131 0.11122224873952291 KYGFGYQL 8 Unmodified _KYGFGYQL_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2509155273438 2 488.25036 974.486168 0.71956 0.00035133 0.52873 0.00025815 1.2483 0.00060948 488.25058312012254 52.212 0.39168 51.778 51.55 51.942 -0.43367 69 19 5 0 0 0 0.26159 2 28119 28119;28218 60.39 10.898 1 69474000 29030 5709;9438 19390 19762 34132;34133 34132 -0.0020960013124522447 KYGFGYQL 8 Unmodified _KYGFGYQL_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2507629394531 2 488.25036 974.486168 0.41645 0.00020333 0.59356 0.00028981 1.01 0.00049314 488.2505617430531 51.814 0.39116 51.755 51.592 51.983 -0.058918 60 18 4 0 0 0 0.3408 2 28109 28010;28109 50.855 10.898 1 38786000 29031 5709;9438 19390 19762 34134;34135 34135 -0.0020960013124522447 KYGFGYQL 8 Unmodified _KYGFGYQL_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7526550292969 2 488.25036 974.486168 0.98805 0.00048241 -0.092839 -4.5329E-05 0.89521 0.00043709 488.2502446210804 57.45 0.53596 51.423 51.181 51.717 -6.0275 89 28 4 0 0 0 0.31612 3 36633 36633;36754;36890 53.576 8.7605 1 416130000 29032 5709;9438 19390 19762 34136;34137;34138 34136 -0.0020960013124522447 KYGFGYQL 8 Unmodified _KYGFGYQL_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.4948120117188 1 975.493444 974.486168 0.71649 0.00069893 0.13176 0.00012853 0.84825 0.00082746 975.4937356965497 57.459 0.27905 51.432 51.313 51.592 -6.0275 24 14 2 0 0 0 0.054506 1 36730 36730 139.54 78.187 1 21971000 29033 5709;9438 19390 19762 34139 34139 -0.0020960013124522447 KYGFGYQL 8 Unmodified _KYGFGYQL_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5 ENSG00000145632|ENST00000274289|PLK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.25036 974.486168 0.32889 0.00016058 -0.15518 -7.5765E-05 0.17371 8.4815E-05 488.2505082673359 51.642 0.3214 51.642 51.431 51.753 0 -0.0072545 -0.00037584 NaN 60.39 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4194500 29034 5709;9438 19390 19762 -0.0020960013124522447 KYGFMAEF 8 Unmodified _KYGFMAEF_ 0 0 0 REV__ENSG00000184619|ENST00000396267|KRBA2 REV__ENSG00000184619|ENST00000396267|KRBA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7280578613281 2 496.730946 991.447339 NaN NaN NaN NaN NaN NaN NaN 67.812 1 67.812 67.312 68.312 0 0 0 0 0.97444 1 37812 37812 5.2307 0 1 + 29035 23431 19391 19763 34140 34140 -0.04872648757270781 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(67)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.771240234375 2 535.770603 1069.52665 0.016731 8.964E-06 -0.069378 -3.7171E-05 -0.052647 -2.8207E-05 535.7704649405252 45.754 0.20739 45.43 45.319 45.527 -0.32425 24 12 2 0 0 0 0.016184 1 24439 24439 67.344 36.707 1 19554000 29036 5256 19392 19764 34141 34141 969 -0.005330018031372674 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(42)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7714233398438 2 535.770603 1069.52665 0.3037 0.00016271 0.066958 3.5874E-05 0.37066 0.00019859 535.7707218833659 46.192 0.27208 45.855 45.723 45.995 -0.33664 38 13 4 0 0 0 0.06187 1 24680 24680 42.095 18.074 1 33959000 29037 5256 19392 19764 34142 34142 969 -0.005330018031372674 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(64)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7711181640625 2 535.770603 1069.52665 0.080363 4.3056E-05 0.18012 9.6506E-05 0.26049 0.00013956 535.77061051477 45.476 0.25978 45.448 45.322 45.582 -0.028011 30 13 3 0 0 0 0.019303 1 24414 24414 64.236 26.262 1 26453000 29038 5256 19392 19764 34143 34143 969 -0.005330018031372674 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(64)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7709350585938 2 535.770603 1069.52665 0.35597 0.00019072 0.33427 0.00017909 0.69024 0.00036981 535.7708586127809 45.927 0.31927 45.899 45.745 46.064 -0.028011 50 14 5 0 0 0 0.019303 1 24651 24651 64.236 26.262 1 25871000 29039 5256 19392 19764 34144 34144 969 -0.005330018031372674 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(60)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7720947265625 2 535.770603 1069.52665 0.92441 0.00049527 1.6221 0.00086907 2.5465 0.0013643 535.7711993835303 51.061 0.43802 45.412 45.134 45.572 -5.649 57 26 3 0 0 0 0.023164 1 32068 32068 60.39 15.983 1 72057000 29040 5256 19392 19764 34145 34145 969 -0.005330018031372674 KYGIQMPAF 9 Oxidation (M) _KYGIQM(Oxidation (M))PAF_ KYGIQM(1)PAF KYGIQM(60)PAF 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7715454101562 2 535.770603 1069.52665 0.57734 0.00030932 0.87776 0.00047028 1.4551 0.0007796 535.7711302196366 51.607 0.26719 45.958 45.804 46.071 -5.649 30 16 2 0 0 0 0.023164 1 32454 32454 60.39 29.753 1 60453000 29041 5256 19392 19764 34146 34146 969 -0.005330018031372674 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7735595703125 2 527.773145 1053.53174 0.38323 0.00020226 1.2015 0.00063413 1.5848 0.00083639 527.7735479352921 64.784 0.32178 64.299 64.169 64.49 -0.48512 32 14 3 0 0 0 0.30562 1 35348 35348 16.942 4.4107 1 2028400 29042 5256 19392 19765 34147 34147 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7722778320312 2 527.773145 1053.53174 0.84234 0.00044456 -0.6153 -0.00032474 0.22704 0.00011983 527.7730288134136 64.324 0.37347 64.313 64.117 64.49 -0.010536 49 18 4 0 0 0 0.038285 2 35166 35166;35271 50.855 27.707 1 16777000 29043 5256 19392 19765 34148;34149 34148 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7757568359375 2 527.773145 1053.53174 0.8626 0.00045526 3.0309 0.0015996 3.8935 0.0020549 527.7752357197434 73.01 0.13702 66.834 66.772 66.909 -6.1757 8 6 2 0 0 0 0.087258 1 47785 47785 36.044 11.37 1 9082400 29044 5256 19392 19765 34150 34150 0.007113020594943009 KYGIQMPAF 9 Unmodified _KYGIQMPAF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.77392578125 2 527.773145 1053.53174 0.984 0.00051933 0.20334 0.00010732 1.1873 0.00062665 527.7724794251734 74.647 2.0317 68.471 67.569 69.601 -6.1757 193 107 2 0 0 0 0.023164 6 49047 48320;48556;48669;48794;48921;49047 60.39 23.351 1 50841000 29045 5256 19392 19765 34151;34152;34153;34154;34155;34156 34156 0.007113020594943009 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.8228759765625 2 548.823692 1095.63283 0.82367 0.00045205 -1.3656 -0.00074945 -0.54189 -0.0002974 548.8229200172686 50.45 0.26128 50.058 49.952 50.213 -0.3923 34 12 3 0 0 0 0.058763 1 27149 27149 45.74 23.004 1 12089000 29046 3867 19393 19766 34157 34157 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.218017578125 3 366.21822 1095.63283 0.85378 0.00031267 -0.77589 -0.00028414 0.077896 2.8527E-05 366.21798069299416 50.491 0.22124 50.077 49.971 50.192 -0.41351 23 10 3 0 0 0 0.040733 1 27183 27183 49.527 32.085 1 3407000 29047 3867 19393 19766 34158 34158 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8267211914062 2 548.823692 1095.63283 1.4265 0.0007829 0.92998 0.00051039 2.3565 0.0012933 548.8240893807118 50.132 0.26361 50.083 49.947 50.21 -0.048824 38 12 4 0 0 0 0.036608 1 27084 27084 55.235 22.449 1 11229000 29048 3867 19393 19766 34159 34159 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2176208496094 3 366.21822 1095.63283 1.9442 0.00071199 -1.9828 -0.00072615 -0.03866 -1.4158E-05 366.21717054981406 79.579 0.94797 73.403 72.829 73.777 -6.1757 72 55 2 0 0 0 0.08907 1 52135 52135 35.612 21.207 1 12299000 29049 3867 19393 19766 34160 34160 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS AL20221201_MKP_PDAC_01 4 366.2183837890625 3 366.21822 1095.63283 NaN NaN NaN NaN NaN NaN NaN 55.212 1 49.291 48.791 49.791 -5.9211 0 0 0 0.20097 1 35121 35121 30.703 17.089 1 29050 3867 19393 19766 34161 34161 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS AL20221201_MKP_PDAC_01 4 366.2179870605469 3 366.21822 1095.63283 NaN NaN NaN NaN NaN NaN NaN 55.395 1 49.474 48.974 49.974 -5.9211 0 0 0 0.20097 1 35263 35263 30.703 14.138 1 29051 3867 19393 19766 34162 34162 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MSMS AL20221201_MKP_PDAC_01 4 366.2190551757812 3 366.21822 1095.63283 NaN NaN NaN NaN NaN NaN NaN 79.359 1 73.183 72.683 73.683 -6.1757 0 0 0 0.59271 1 51995 51995 12.873 5.7709 1 29052 3867 19393 19766 34163 34163 0.0888407703384928 KYGIVLKEF 9 Unmodified _KYGIVLKEF_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2999267578125 2 548.823692 1095.63283 1.089 0.00059769 -0.91942 -0.0005046 0.16962 9.3094E-05 548.8228549728509 55.332 0.3628 49.41 49.241 49.603 -5.9211 43 22 3 0 0 0 0.19994 1 35151 35151 12.241 8.6442 1 23422000 29053 3867 19393 19766 34164 34164 0.0888407703384928 KYGIVQEF 8 Unmodified _KYGIVQEF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2640686035156 2 492.263468 982.512382 -0.48556 -0.00023902 1.0796 0.00053146 0.59406 0.00029244 492.26412380388336 48.74 0.33543 48.74 48.555 48.89 0 38 15 3 0 0 0 0.57045 1 26805 26805 28.487 1.6032 1 17845000 29054 6029 19394 19767 34165 34165 0.02042669040235978 KYGIVQEF 8 Unmodified _KYGIVQEF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2632751464844 2 492.263468 982.512382 0.74709 0.00036776 -1.3554 -0.00066722 -0.60833 -0.00029946 492.26245042169495 54.531 0.36626 48.666 48.469 48.835 -5.8653 43 22 2 0 0 0 0.57045 1 34565 34565 28.487 5.3384 1 72552000 29055 6029 19394 19767 34166 34166 0.02042669040235978 KYGIVQEFF 9 Unmodified _KYGIVQEFF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7971801757812 2 565.797675 1129.5808 0.78023 0.00044146 -0.3805 -0.00021528 0.39974 0.00022617 565.7974332021429 72.465 0.39537 71.989 71.813 72.209 -0.47609 57 18 4 0 0 0 0.07916 2 39603 39603;39705 37.974 11.09 1 22131000 29056 6029 19395 19768 34167;34168 34167 0.02118913620074636 KYGIVQEFF 9 Unmodified _KYGIVQEFF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7980346679688 2 565.797675 1129.5808 0.76808 0.00043458 0.16186 9.1578E-05 0.92993 0.00052615 565.7977426649145 71.893 0.3632 71.932 71.748 72.111 0.039032 31 17 2 0 0 0 0.07916 2 39557 39557;39660 37.974 11.09 1 11752000 29057 6029 19395 19768 34169;34170 34169 0.02118913620074636 KYGIVQEFF 9 Unmodified _KYGIVQEFF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.800537109375 2 565.797675 1129.5808 1.5498 0.00087687 -0.40808 -0.00023089 1.1417 0.00064599 565.7973434896201 95.685 0.39754 89.509 89.299 89.696 -6.1757 78 24 4 0 0 0 0.024882 2 63298 63298;63416 58.679 18.166 1 214400000 29058 6029 19395 19768 34171;34172 34171 0.02118913620074636 KYGIVQEFF 9 Unmodified _KYGIVQEFF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 565.797675 1129.5808 0.2183 0.00012352 -0.24563 -0.00013897 -0.027321 -1.5458E-05 566.2989177513144 72.113 0.17153 72.113 71.966 72.137 0 0.10191 -9.248E-05 NaN 37.974 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 774530 29059 6029 19395 19768 0.02118913620074636 KYGKALTAI 9 Unmodified _KYGKALTAI_ 0 0 0 REV__ENSG00000198796|ENST00000361673|ALPK2 REV__ENSG00000198796|ENST00000361673|ALPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 964.5818481445312 1 964.582593 963.575317 -0.29626 -0.00028577 -0.20262 -0.00019544 -0.49888 -0.00048121 964.5820215037838 104.51 0.032143 104.46 104.44 104.47 -0.048737 4 2 2 0 0 0 0.62242 1 58032 58032 0 0 1 2828800 + 29060 24061 19396 19769 34173 34173 0.09207234828238597 KYGKALTAI 9 Unmodified _KYGKALTAI_ 0 0 0 REV__ENSG00000198796|ENST00000361673|ALPK2 REV__ENSG00000198796|ENST00000361673|ALPK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 964.582593 963.575317 -0.29626 -0.00028577 -0.20262 -0.00019544 -0.49888 -0.00048121 964.5820215037838 104.51 0.032143 104.46 104.44 104.47 -0.048737 0 0 NaN 0 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2828800 + 29061 24061 19396 19769 0.09207234828238597 KYGKSLYYYI 10 Unmodified _KYGKSLYYYI_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000560014.5_1_15:60639831-60644581:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5671081542969 3 433.232418 1296.67542 1.2585 0.0005452 -0.14133 -6.1227E-05 1.1171 0.00048398 433.2319992179463 49.845 0.26239 49.796 49.665 49.927 -0.048828 20 12 3 0 0 0 0.70053 1 26952 26952 2.8433 0.21205 1 2008200 29062 9079 19397 19770 34174 34174 0.038954273714352894 KYGLFQHI 8 Unmodified _KYGLFQHI_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2796630859375 2 503.279452 1004.54435 -0.083038 -4.1791E-05 0.42825 0.00021553 0.34522 0.00017374 503.27947881356533 44.668 0.14537 44.646 44.612 44.758 -0.022064 12 7 2 0 0 0 0.079151 1 23990 23990 109.63 24.273 1 8848300 29063 3196 19398 19771 34175 34175 0.0422608151403665 KYGLQLPAF 9 Unmodified _KYGLQLPAF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7970581054688 2 518.794935 1035.57532 0.073516 3.814E-05 1.7872 0.00092721 1.8608 0.00096535 518.795909505764 72.483 0.38309 72.525 72.297 72.68 0.041733 56 17 4 0 0 0 0.023164 1 39878 39878 60.39 29.753 1 7343600 29064 9204 19399 19772 34176 34176 0.058952348282673483 KYGLQLPAF 9 Unmodified _KYGLQLPAF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.3269653320312 2 518.794935 1035.57532 1.0732 0.00055675 0.087348 4.5316E-05 1.1605 0.00060207 518.7949452486953 89.982 0.72871 83.806 83.345 84.074 -6.1757 70 40 2 0 0 0 0.07019 1 59590 59590 44.407 44.407 1 12884000 29065 9204 19399 19772 34177 34177 0.058952348282673483 KYGMVTYLL 9 Oxidation (M) _KYGM(Oxidation (M))VTYLL_ KYGM(1)VTYLL KYGM(42)VTYLL 0 0 1 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2943725585938 2 552.293911 1102.57327 NaN NaN NaN NaN NaN NaN NaN 57.397 1 57.331 56.831 57.831 -0.066036 0 0 0 0.10759 1 31242 31242 41.84 9.7227 1 29066 6601 19400 19773 34178 34178 1153 0.026084380281417907 KYGMVTYLL 9 Unmodified _KYGMVTYLL_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2974853515625 2 544.296453 1086.57835 0.073642 4.0083E-05 0.53626 0.00029188 0.6099 0.00033197 544.296762795775 93.334 0.52086 87.159 86.948 87.469 -6.1757 84 37 3 0 0 0 0.14 2 61801 61801;61946 29.082 5.9332 1 43763000 29067 6601 19400 19774 34179;34180 34179 0.03852741890773359 KYGNANVW 8 Unmodified _KYGNANVW_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2384033203125 2 476.237784 950.461016 -0.13907 -6.623E-05 1.8433 0.00087783 1.7042 0.0008116 476.2388721313413 33.434 0.19853 33.275 33.171 33.369 -0.15918 10 7 2 0 0 0 0.74163 1 17456 17456 13.508 0.97634 1 804280 29068 2224 19401 19775 34181 34181 -0.01619654933813308 KYGNANVW 8 Unmodified _KYGNANVW_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 476.237784 950.461016 -0.25245 -0.00012023 -0.028246 -1.3452E-05 -0.2807 -0.00013368 476.237197350364 33.422 0.14821 33.422 33.285 33.434 0 0.073584 -0.0013233 NaN 13.508 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2241800 29069 2224 19401 19775 -0.01619654933813308 KYGNFIDKL 9 Unmodified _KYGNFIDKL_ 0 0 0 nc|ENSG00000105793|A4D1E9-3|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10;ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-2|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3037109375 2 549.303124 1096.5917 0.6556 0.00036013 -0.081105 -4.4551E-05 0.5745 0.00031557 549.3028711969837 47.147 0.2151 46.805 46.655 46.87 -0.34182 22 10 3 0 0 0 0.0039711 1 25265 25265 121.53 62.855 1 6343000 29070 2365 19402 19776 34182 34182 0.04726315994344077 KYGNFIDKL 9 Unmodified _KYGNFIDKL_ 0 0 0 nc|ENSG00000105793|A4D1E9-3|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10;ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-2|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 nc|ENSG00000105793|A4D1E9-3|GTPBP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3041381835938 2 549.303124 1096.5917 1.2654 0.00069509 -0.38831 -0.0002133 0.87708 0.00048178 549.3026178753036 46.859 0.2069 46.826 46.712 46.919 -0.033421 21 9 3 0 0 0 0.0025703 1 25219 25219 128.93 70.254 1 3423200 29071 2365 19402 19776 34183 34183 0.04726315994344077 KYGNQLVRL 9 Unmodified _KYGNQLVRL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8218383789062 2 545.822015 1089.62948 -0.23887 -0.00013038 0.099013 5.4043E-05 -0.13985 -7.6335E-05 545.8222086390535 36.861 0.23628 36.882 36.727 36.963 0.021545 24 10 3 0 0 0 0.022193 1 19521 19521 61.357 23.383 1 5080200 29072 7502 19403 19777 34184 34184 0.08824826979844147 KYGNQLVRL 9 Unmodified _KYGNQLVRL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8209228515625 2 545.822015 1089.62948 1.1538 0.00062974 0.52418 0.00028611 1.6779 0.00091585 545.8222015570241 40.899 0.47997 36.291 36.067 36.547 -4.6079 50 29 2 0 0 0 0.013041 1 24417 24417 71.922 30.083 1 16809000 29073 7502 19403 19777 34185 34185 0.08824826979844147 KYGNQLVRL 9 Unmodified _KYGNQLVRL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MSMS AL20221201_MKP_PDAC_01 4 364.2172546386719 3 364.217102 1089.62948 NaN NaN NaN NaN NaN NaN NaN 40.803 1 36.274 35.774 36.774 -4.5294 0 0 0 0.12337 1 24414 24414 29.841 14.592 1 29074 7502 19403 19777 34186 34186 0.08824826979844147 KYGNQLVRL 9 Unmodified _KYGNQLVRL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7;ENST00000463722.5_1_7:99697202-99698956:-|nuORF ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MSMS AL20221201_MKP_PDAC_01 4 364.2210693359375 3 364.217102 1089.62948 NaN NaN NaN NaN NaN NaN NaN 40.995 1 36.387 35.887 36.887 -4.6079 0 0 0 0.50124 1 24557 24557 10.8 0 1 29075 7502 19403 19777 34187 34187 0.08824826979844147 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.79296875 2 487.792727 973.5709 -0.621 -0.00030292 0.93993 0.00045849 0.31893 0.00015557 487.79305316214004 28.254 0.27788 28.254 28.109 28.387 0 29 13 3 0 0 0 0.19792 1 14591 14591 70.716 23.795 1 6444300 29076 3087 19404 19778 34188 34188 0.08305770405377189 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7928466796875 2 487.792727 973.5709 0.7013 0.00034209 -0.29749 -0.00014511 0.40381 0.00019698 487.7925528458953 28.193 0.25782 28.147 27.984 28.242 -0.046408 24 9 3 0 0 0 0.19792 1 14501 14501 70.716 17.14 1 21946000 29077 3087 19404 19778 34189 34189 0.08305770405377189 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7928771972656 2 487.792727 973.5709 0.43076 0.00021012 0.99491 0.00048531 1.4257 0.00069543 487.79293730612204 28.089 0.3064 28.119 27.929 28.236 0.029564 38 11 4 0 0 0 0.069468 1 14558 14558 123.1 41.232 1 59499000 29078 3087 19404 19778 34190 34190 0.08305770405377189 KYGPIRQI 8 Unmodified _KYGPIRQI_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7923583984375 2 487.792727 973.5709 0.66808 0.00032589 0.086798 4.2339E-05 0.75488 0.00036822 487.79266157085226 31.387 0.39884 27.691 27.487 27.886 -3.6958 56 21 3 0 0 0 0.069468 2 17686 17686;17796 123.1 41.232 1 223000000 29079 3087 19404 19778 34191;34192 34191 0.08305770405377189 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7481994628906 2 472.747453 943.480354 0.46072 0.0002178 0.90111 0.000426 1.3618 0.0006438 472.74759689102103 63.681 0.27958 63.195 63.016 63.295 -0.48617 27 12 3 0 0 0 0.44629 1 34706 34706 39.957 5.8549 1 4689900 29080 259 19405 19779 34193 34193 0.006353013570901567 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7479248046875 2 472.747453 943.480354 0.33135 0.00015664 -0.0049284 -2.3299E-06 0.32642 0.00015431 472.74741243280556 63.275 0.39351 63.253 63.029 63.422 -0.021614 64 19 4 0 0 0 0.18875 2 34532 34532;34644 74.423 7.0789 1 59746000 29081 259 19405 19779 34194;34195 34194 0.006353013570901567 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7483825683594 2 472.747453 943.480354 0.64837 0.00030652 -0.29111 -0.00013762 0.35727 0.0001689 472.7474327181541 68.234 0.67063 62.058 61.799 62.47 -6.1757 99 39 4 0 0 0 0.23628 3 44412 44412;44545;44674 64.236 22.142 1 117080000 29082 259 19405 19779 34196;34197;34198 34196 0.006353013570901567 KYGPVFSF 8 Unmodified _KYGPVFSF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 472.747453 943.480354 0.8597 0.00040642 1.3782 0.00065154 2.2379 0.001058 472.74749859207515 69.226 0.35873 63.05 62.923 63.281 -6.1757 -0.11586 0.0011228 NaN 74.423 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 12843000 29083 259 19405 19779 0.006353013570901567 KYGPVFTI 8 Unmodified _KYGPVFTI_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7629089355469 2 462.763104 923.511654 -0.11931 -5.5211E-05 -0.30263 -0.00014004 -0.42193 -0.00019526 462.7629289613035 60.374 0.27987 59.883 59.708 59.988 -0.49079 31 13 3 0 0 0 0.3408 1 32828 32828 50.855 12.704 1 14240000 29084 7633 19406 19780 34199 34199 0.046838743911848724 KYGPVFTI 8 Unmodified _KYGPVFTI_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7637023925781 2 462.763104 923.511654 0.39287 0.00018181 -0.11492 -5.3183E-05 0.27795 0.00012862 462.762947588577 60.026 0.32757 59.973 59.776 60.103 -0.053062 41 16 3 0 0 0 0.36356 2 32679 32679;32781 48.346 42.095 1 21416000 29085 7633 19406 19780 34200;34201 34200 0.046838743911848724 KYGPVFTI 8 Unmodified _KYGPVFTI_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7634582519531 2 462.763104 923.511654 0.47099 0.00021796 0.56814 0.00026292 1.0391 0.00048087 462.76329716523463 65.337 0.55846 59.162 58.823 59.382 -6.1757 79 30 3 0 0 0 0.36356 3 42534 42257;42389;42534 48.346 12.302 1 89527000 29086 7633 19406 19780 34202;34203;34204 34204 0.046838743911848724 KYGPVVSLL 9 Unmodified _KYGPVVSLL_ 0 0 0 ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2980346679688 2 488.29731 974.580068 1.1137 0.0005438 -0.4084 -0.00019942 0.70527 0.00034438 488.2970636078599 64.293 0.35354 64.282 64.117 64.47 -0.010529 38 17 3 0 0 0 0.06294 1 35161 35161 41.84 1.8823 1 12519000 29087 6178 19407 19781 34205 34205 0.0917611897103825 KYGPVVSLL 9 Unmodified _KYGPVVSLL_ 0 0 0 ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2980651855469 2 488.29731 974.580068 0.86756 0.00042363 0.33324 0.00016272 1.2008 0.00058635 488.2974041654039 69.324 0.3195 63.148 62.962 63.281 -6.1757 32 17 2 0 0 0 0.05447 2 45220 45220;45356 43.858 9.7559 1 23287000 29088 6178 19407 19781 34206;34207 34206 0.0917611897103825 KYGQCWVF 8 Carbamidomethyl (C) _KYGQC(Carbamidomethyl (C))WVF_ KYGQC(1)WVF KYGQC(57)WVF 0 1 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF;nc|ENSG00000166948|O95932-2|TGM6;ENSG00000166948|ENST00000202625|TGM6;ENSG00000159495|ENST00000452443|TGM7 ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2542114257812 2 544.25512 1086.49569 0.79655 0.00043353 0.53806 0.00029284 1.3346 0.00072637 544.2555094642784 63.424 0.59547 57.248 57 57.595 -6.1757 108 33 4 0 0 0 0.28922 3 40869 40869;41005;41149 56.541 22.354 1 143820000 29089 10212 19408 19782 34208;34209;34210 34208 924 -0.04410155117375325 KYGQGFYLI 9 Unmodified _KYGQGFYLI_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7924194335938 2 544.792392 1087.57023 0.0093318 5.0839E-06 0.069301 3.7755E-05 0.078633 4.2839E-05 544.7923529701842 66.708 0.62346 66.225 65.946 66.569 -0.48323 114 29 6 0 0 0 0.070838 1 36482 36482 39.957 13.074 1 87160000 29090 1104 19409 19783 34211 34211 0.0299493096565584 KYGQGFYLI 9 Unmodified _KYGQGFYLI_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.792236328125 2 544.792392 1087.57023 1.0174 0.00055426 -0.34973 -0.00019053 0.66765 0.00036373 544.7921176851011 66.165 0.67195 66.175 65.973 66.645 0.0095596 120 33 5 0 0 0 0.042911 1 36227 36227 48.346 14.243 1 451440000 29091 1104 19409 19783 34212 34212 0.0299493096565584 KYGQGFYLI 9 Unmodified _KYGQGFYLI_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7926635742188 2 544.792392 1087.57023 0.7824 0.00042625 -0.052126 -2.8398E-05 0.73028 0.00039785 544.7922844974379 80.778 2.4753 74.602 73.304 75.78 -6.1757 372 143 3 0 0 0 0.016184 8 53276 52512;52652;52783;52905;53022;53146;53276;53534 67.344 23.369 1 130670000 29092 1104 19409 19783 34213;34214;34215;34216;34217;34218;34219;34220 34219 0.0299493096565584 KYGRAHPVF 9 Unmodified _KYGRAHPVF_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2;ENST00000504983.1_1_5:175919267-175921086:+|nuORF ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8663330078125 3 358.866293 1073.57705 1.695 0.00060829 -0.23107 -8.2922E-05 1.464 0.00052537 358.86647949978976 21.856 0.43808 19.121 18.882 19.32 -2.7348 52 24 3 0 0 0 0.39863 1 11740 11740 8.1555 0 1 3729500 29093 2945 19410 19784 34221 34221 0.04320288636881742 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5295715332031 3 366.529458 1096.56654 -0.82695 -0.0003031 0.61603 0.00022579 -0.21092 -7.7308E-05 366.5296225223228 30.362 0.24085 30.362 30.222 30.463 0 26 11 3 0 0 0 0.25681 1 15752 15752 18.373 0 1 4918400 29094 1541 19411 19785 34222 34222 0.022122611917893664 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MSMS AL20221201_MKP_PDAC_01 4 549.291015625 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 33.611 1 29.626 29.126 30.126 -3.9853 0 0 0 0.017438 1 19290 19290 81.89 30.26 1 29095 1541 19411 19785 34223 34223 0.022122611917893664 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MSMS AL20221201_MKP_PDAC_01 4 549.2916870117188 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 33.788 1 29.803 29.303 30.303 -3.9853 0 0 0 0.059498 1 19409 19409 53.833 13.883 1 29096 1541 19411 19785 34224 34224 0.022122611917893664 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 366.529458 1096.56654 -0.82695 -0.0003031 0.61603 0.00022579 -0.21092 -7.7308E-05 366.5296225223228 30.362 0.24085 30.362 30.222 30.463 0 0.11145 -0.00023429 NaN 18.373 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4918400 29097 1541 19411 19785 0.022122611917893664 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.529458 1096.56654 0.59566 0.00021833 0.73156 0.00026814 1.3272 0.00048646 366.5296821281745 30.332 0.20477 30.251 30.128 30.333 -0.080429 0.00091012 -0.00010725 NaN 18.373 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2619200 29098 1541 19411 19785 0.022122611917893664 KYGRDFQAI 9 Unmodified _KYGRDFQAI_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 366.529458 1096.56654 -0.10728 -3.9322E-05 1.8845 0.00069074 1.7773 0.00065142 366.52983656662167 30.108 0.18603 30.138 30.021 30.207 0.030104 -0.11236 0.0011606 NaN 18.373 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 790550 29099 1541 19411 19785 0.022122611917893664 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.5540771484375 3 359.553603 1075.63898 0.11794 4.2407E-05 0.3907 0.00014048 0.50864 0.00018288 359.55373601590276 42.933 0.23585 42.623 42.484 42.72 -0.31039 23 10 3 0 0 0 0.1685 1 22799 22799 26.268 3.6101 1 19994000 29100 5838 19412 19786 34225 34225 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.826416015625 2 538.826766 1075.63898 0.010915 5.8814E-06 0.5162 0.00027814 0.52711 0.00028402 538.8270986865828 42.941 0.21455 42.631 42.505 42.72 -0.31039 23 9 3 0 0 0 0.0088668 1 22801 22801 96.111 39.934 1 12206000 29101 5838 19412 19786 34226 34226 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8276977539062 2 538.826766 1075.63898 0.45005 0.0002425 0.29027 0.00015641 0.74033 0.00039891 538.827005520095 42.638 0.21378 42.629 42.491 42.705 -0.0088196 19 9 3 0 0 0 0.040733 1 22808 22808 53.833 15.859 1 6531700 29102 5838 19412 19786 34227 34227 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.5543518066406 3 359.553603 1075.63898 0.35809 0.00012875 0.259 9.3124E-05 0.61709 0.00022188 359.5537066794855 42.604 0.21818 42.596 42.467 42.686 -0.0088196 22 9 3 0 0 0 0.078314 1 22817 22817 38.176 9.6811 1 9284600 29103 5838 19412 19786 34228 34228 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8280639648438 2 538.826766 1075.63898 1.5059 0.0008114 -0.50793 -0.00027368 0.99793 0.00053771 538.8266933328248 47.662 0.46309 42.428 42.165 42.628 -5.2339 66 27 3 0 0 0 0.020316 2 29507 29507;29642 69.105 19.551 1 29673000 29104 5838 19412 19786 34229;34230 34229 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5537414550781 3 359.553603 1075.63898 1.485 0.00053393 -0.038624 -1.3887E-05 1.4463 0.00052004 359.55340599386534 77.788 0.57638 71.613 71.254 71.831 -6.1757 43 32 2 0 0 0 0.43515 1 50780 50780 10.8 0.64894 1 14310000 29105 5838 19412 19786 34231 34231 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.826766 1075.63898 0.97951 0.00052779 -1.3161 -0.00070913 -0.33654 -0.00018134 538.8260758232793 42.765 0.18917 42.765 42.7 42.889 0 0.1685 -0.00053558 NaN 69.105 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1778500 29106 5838 19412 19786 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 359.553603 1075.63898 0.8499 0.00030558 -0.62181 -0.00022357 0.22808 8.2009E-05 359.5534869990152 42.774 0.22702 42.774 42.682 42.909 0 0.041836 -0.00081511 NaN 38.176 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2406700 29107 5838 19412 19786 0.1041859526535518 KYGRIVEVL 9 Unmodified _KYGRIVEVL_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2 nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 359.553603 1075.63898 1.3232 0.00047578 -0.078963 -2.8391E-05 1.2443 0.00044738 359.55359751134495 48.171 0.099457 42.937 42.888 42.988 -5.2339 0.20453 -0.00022956 NaN 38.176 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4579000 29108 5838 19412 19786 0.1041859526535518 KYGRPDEI 8 Unmodified _KYGRPDEI_ 0 0 0 ENSG00000148225|ENST00000374193|WDR31 ENSG00000148225|ENST00000374193|WDR31 ENSG00000148225|ENST00000374193|WDR31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2544860839844 2 489.256174 976.497795 -1.009 -0.00049365 2.5864 0.0012654 1.5774 0.00077177 489.25611519466554 32.297 0.1904 32.297 32.164 32.355 0 20 9 3 0 0 0 0.58902 1 16862 16862 26.884 1.4843 1 2633200 29109 5907 19413 19787 34232 34232 0.008605968920733176 KYGRSPAQIL 10 Unmodified _KYGRSPAQIL_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;ENST00000487654.5_1_1:46033819-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2198791503906 3 378.220624 1131.64004 0.6206 0.00023473 -1.3059 -0.00049393 -0.68533 -0.00025921 378.2200539505936 23.203 0.25143 20.424 20.305 20.557 -2.7784 57 25 3 0 0 0 0.67033 1 12539 12539 5.7834 3.0482 1 20104000 29110 3304 19414 19788 34233 34233 0.07948809634262943 KYGSNVHRI 9 Unmodified _KYGSNVHRI_ 0 0 0 ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B ENSG00000108819|ENST00000612501|PPP1R9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5334777832031 3 358.533202 1072.57778 0.84378 0.00030252 0.74899 0.00026854 1.5928 0.00057106 358.53343745095714 15.356 0.12112 12.829 12.782 12.904 -2.5273 41 25 2 0 0 0 0.47846 1 7888 7888 12.873 11.391 1 1318100 29111 2608 19415 19789 34234 34234 0.044390832859335205 KYGSVIQLL 9 Unmodified _KYGSVIQLL_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.8081665039062 2 510.808042 1019.60153 0.1443 7.3711E-05 0.19256 9.836E-05 0.33686 0.00017207 510.8080934179656 68.713 0.36585 68.232 68.01 68.376 -0.48071 43 16 4 0 0 0 0.044011 1 37595 37595 47.749 5.9091 1 12143000 29112 1673 19416 19790 34235 34235 0.09251503999769284 KYGSVIQLL 9 Unmodified _KYGSVIQLL_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8085327148438 2 510.808042 1019.60153 0.74314 0.0003796 -0.40119 -0.00020493 0.34195 0.00017467 510.80779651916293 68.221 0.41312 68.246 68.023 68.436 0.025146 58 20 4 0 0 0 0.0082353 2 37418 37418;37523 96.111 10.304 1 41349000 29113 1673 19416 19790 34236;34237 34236 0.09251503999769284 KYGSVIQLL 9 Unmodified _KYGSVIQLL_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8081359863281 2 510.808042 1019.60153 0.95783 0.00048927 0.14332 7.3211E-05 1.1012 0.00056248 510.8078074675186 89.746 1.1215 83.57 82.779 83.9 -6.1757 157 62 3 0 0 0 0.014417 1 59042 59042 69.105 6.5322 1 45185000 29114 1673 19416 19790 34238 34238 0.09251503999769284 KYGSVTVW 8 Unmodified _KYGSVTVW_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2501220703125 2 470.25036 938.486168 0.17145 8.0623E-05 -0.6015 -0.00028286 -0.43006 -0.00020223 470.2500162627704 45.884 0.24554 45.56 45.51 45.755 -0.32425 21 12 2 0 0 0 0.30525 1 24534 24534 54.774 7.8527 1 8128800 29115 6041 19417 19791 34239 34239 0.014463998687460844 KYGSVTVW 8 Unmodified _KYGSVTVW_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2509765625 2 470.25036 938.486168 0.0053437 2.5129E-06 0.15662 7.3649E-05 0.16196 7.6162E-05 470.25036775423825 45.629 0.22832 45.601 45.473 45.702 -0.028015 19 11 2 0 0 0 0.32798 1 24533 24533 52.268 16.224 1 4278100 29116 6041 19417 19791 34240 34240 0.014463998687460844 KYGSVTVW 8 Unmodified _KYGSVTVW_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2500305175781 2 470.25036 938.486168 0.98421 0.00046283 -0.065054 -3.0592E-05 0.91916 0.00043224 470.25023348890414 50.677 0.44444 45.028 44.819 45.264 -5.649 65 27 3 0 0 0 0.38465 2 31840 31712;31840 46.021 11.87 1 75223000 29117 6041 19417 19791 34241;34242 34242 0.014463998687460844 KYGTKIEHF 9 Unmodified _KYGTKIEHF_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.869140625 3 374.869591 1121.58694 -0.40236 -0.00015083 -0.22108 -8.2876E-05 -0.62343 -0.00023371 374.86933937113156 21.41 0.14755 21.41 21.341 21.489 0 41 20 3 0 0 0 0.53557 1 10808 10808 5.2969 2.3016 1 2191600 29118 3201 19418 19792 34243 34243 0.031014318516099593 KYGTKIEHF 9 Unmodified _KYGTKIEHF_ 0 0 0 nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-4|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2 nc|ENSG00000116171|P22307-3|SCP2 nc|ENSG00000116171|P22307-3|SCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2046508789062 3 374.869591 1121.58694 0.79583 0.00029833 0.94133 0.00035287 1.7372 0.00065121 375.20446077529493 24.414 0.40281 21.587 21.392 21.795 -2.8273 70 22 4 0 0 0 0.14859 1 13284 13284 28.234 17.434 1 17713000 29119 3201 19418 19792 34244 34244 0.031014318516099593 KYGTLQEFSF 10 Unmodified _KYGTLQEFSF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3012084960938 2 610.303321 1218.59209 0.60806 0.0003711 -2.5957 -0.0015842 -1.9876 -0.0012131 610.3017290550927 64.024 0.28927 63.539 63.386 63.675 -0.48512 33 15 3 0 0 0 0.48629 1 34894 34894 24.991 5.629 1 3124200 29120 4014 19419 19793 34245 34245 -0.008463090764280423 KYGVFEESL 9 Unmodified _KYGVFEESL_ 0 0 0 ENSG00000258659|ENST00000429814|TRIM34;ENST00000495668.1_1_11:5664055-5664936:+|nuORF ENSG00000258659|ENST00000429814|TRIM34 ENSG00000258659|ENST00000429814|TRIM34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2718505859375 2 536.27149 1070.52843 0.4494 0.000241 -1.4828 -0.00079519 -1.0334 -0.00055419 536.2717177786524 51.612 0.452 51.612 51.412 51.864 0 61 20 5 0 0 0 0.38785 1 28602 28602 13.042 4.2971 1 100080000 29121 10819 19420 19794 34246 34246 -0.004016695135305781 KYGVFEESL 9 Unmodified _KYGVFEESL_ 0 0 0 ENSG00000258659|ENST00000429814|TRIM34;ENST00000495668.1_1_11:5664055-5664936:+|nuORF ENSG00000258659|ENST00000429814|TRIM34 ENSG00000258659|ENST00000429814|TRIM34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2719116210938 2 536.27149 1070.52843 0.16755 8.9855E-05 0.0016571 8.8863E-07 0.16921 9.0744E-05 536.2716962079253 57.958 0.47547 51.931 51.698 52.173 -6.0275 67 26 3 0 0 0 0.020973 1 37164 37164 62.573 14.227 1 146680000 29122 10819 19420 19794 34247 34247 -0.004016695135305781 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2816162109375 2 532.282192 1062.54983 -0.061197 -3.2574E-05 -1.6372 -0.00087146 -1.6984 -0.00090403 532.281256279975 38.758 0.26737 38.471 38.363 38.63 -0.28687 31 12 3 0 0 0 0.011968 1 20381 20381 74.929 38.885 1 13004000 29123 2850 19421 19795 34248 34248 0.02105760305835247 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.282958984375 2 532.282192 1062.54983 0.81259 0.00043253 0.58591 0.00031187 1.3985 0.0007444 532.2824728612318 42.917 0.37505 38.233 38.055 38.431 -4.6846 44 23 2 0 0 0 0.0085164 2 25926 25926;26070 99.799 63.755 1 83436000 29124 2850 19421 19795 34249;34250 34249 0.02105760305835247 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.1910400390625 3 355.190553 1062.54983 1.5378 0.00054622 0.29757 0.0001057 1.8354 0.00065191 355.1906003682679 42.917 0.37312 38.233 38.041 38.414 -4.6846 57 23 3 0 0 0 0.070838 1 25938 25938 29.841 10.584 1 43919000 29125 2850 19421 19795 34251 34251 0.02105760305835247 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.190553 1062.54983 0.33687 0.00011965 -0.44154 -0.00015683 -0.10467 -3.7177E-05 355.19027924754243 38.394 0.22544 38.394 38.352 38.577 0 0.019132 -0.0006913 NaN 29.841 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2593900 29126 2850 19421 19795 0.02105760305835247 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 355.190553 1062.54983 -0.032276 -1.1464E-05 0.35083 0.00012461 0.31855 0.00011315 355.19060837316886 38.784 0.20265 38.497 38.382 38.585 -0.28687 0.12275 0.00015302 NaN 29.841 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3684400 29127 2850 19421 19795 0.02105760305835247 KYGVHEAIF 9 Unmodified _KYGVHEAIF_ 0 0 0 nc|ENSG00000112033|Q03181-4|PPARD;nc|ENSG00000112033|Q03181-2|PPARD;nc|ENSG00000112033|Q03181-3|PPARD;ENSG00000112033|ENST00000360694|PPARD nc|ENSG00000112033|Q03181-4|PPARD nc|ENSG00000112033|Q03181-4|PPARD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.282192 1062.54983 0.104 5.5358E-05 -1.5747 -0.00083821 -1.4707 -0.00078285 532.2811371434166 38.342 0.22181 38.359 38.239 38.46 0.01704 0.0051622 -0.0014922 NaN 99.799 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4331000 29128 2850 19421 19795 0.02105760305835247 KYGVTFYNF 9 Unmodified _KYGVTFYNF_ 0 0 0 ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF ENST00000510737.1_1_4:120160395-120160458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7827758789062 2 569.782025 1137.5495 0.74038 0.00042185 0.11774 6.7085E-05 0.85812 0.00048894 569.7820463996715 63.569 0.41136 63.559 63.351 63.762 -0.010532 49 19 3 0 0 0 0.028475 2 34827 34730;34827 56.177 39.235 1 43306000 29129 14594 19422 19796 34252;34253 34253 -0.013776594140153975 KYHGYPYSF 9 Unmodified _KYHGYPYSF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8508605957031 3 387.850308 1160.5291 0.02606 1.0107E-05 0.69642 0.00027011 0.72248 0.00028021 387.85057494030343 38.451 0.30896 38.165 37.953 38.262 -0.28687 35 13 3 0 0 0 0.095405 1 20191 20191 31.268 23.113 1 7093200 29130 16100 19423 19797 34254 34254 -0.04474830073831981 KYHGYPYSF 9 Unmodified _KYHGYPYSF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8509216308594 3 387.850308 1160.5291 -0.064889 -2.5167E-05 -0.54149 -0.00021002 -0.60637 -0.00023518 388.183916489615 38.067 0.62193 38.084 37.592 38.214 0.01704 52 29 3 0 0 0 0.23158 1 20197 20197 19.362 2.7961 1 5920700 29131 16100 19423 19797 34255 34255 -0.04474830073831981 KYHGYPYSF 9 Unmodified _KYHGYPYSF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2728271484375 2 581.271824 1160.5291 0.48955 0.00028456 3.301 0.0019188 3.7906 0.0022033 581.2726256397059 38.064 0.33106 38.081 37.839 38.17 0.01704 33 15 3 0 0 0 0.039985 1 20199 20199 49.933 20.851 1 5214800 29132 16100 19423 19797 34256 34256 -0.04474830073831981 KYHGYPYSF 9 Unmodified _KYHGYPYSF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8508911132812 3 387.850308 1160.5291 1.5599 0.00060501 -1.1591 -0.00044954 0.40086 0.00015547 387.85028031259543 41.929 0.52094 37.314 37.07 37.591 -4.6154 61 32 4 0 0 0 0.16226 1 25283 25283 24.991 7.8781 1 47004000 29133 16100 19423 19797 34257 34257 -0.04474830073831981 KYHGYPYSF 9 Unmodified _KYHGYPYSF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000102158|ENST00000618282|MAGT1 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.272705078125 2 581.271824 1160.5291 1.2208 0.00070961 0.13783 8.0115E-05 1.3586 0.00078972 581.27147541848 41.955 0.52414 37.271 36.953 37.477 -4.6846 53 32 3 0 0 0 0.024882 1 25286 25286 58.679 18.721 1 51077000 29134 16100 19423 19797 34258 34258 -0.04474830073831981 KYHIVKQIF 9 Unmodified _KYHIVKQIF_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.319580078125 2 588.350409 1174.68626 0.084529 4.9733E-05 -2.5462 -0.0014981 -2.4617 -0.0014483 588.3488962672405 35.292 0.18251 35.319 35.233 35.415 0.027401 14 8 2 0 0 0 0.18882 1 18704 18704 15.847 4.2069 1 5002200 29135 5076 19424 19798 34259 34259 0.10590874536364936 KYHIVKQIF 9 Unmodified _KYHIVKQIF_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5694580078125 3 392.569365 1174.68626 1.534 0.0006022 0.11514 4.5201E-05 1.6491 0.0006474 392.56937006881975 88.218 0.49897 82.042 81.85 82.349 -6.1757 88 27 4 0 0 0 0.012148 2 58108 58108;58236 75.761 48.132 1 104570000 29136 5076 19424 19798 34260;34261 34260 0.10590874536364936 KYHIVKQIF 9 Unmodified _KYHIVKQIF_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3512573242188 2 588.350409 1174.68626 1.1886 0.0006993 -0.053181 -3.1289E-05 1.1354 0.00066801 588.3503524604102 88.218 0.35294 82.043 81.907 82.26 -6.1757 31 19 2 0 0 0 0.0086904 1 58185 58185 107.19 42.951 1 13579000 29137 5076 19424 19798 34262 34262 0.10590874536364936 KYHIVKQIF 9 Unmodified _KYHIVKQIF_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3;ENST00000470815.1_1_4:89579558-89588530:+|nuORF ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MSMS AL20221201_MKP_PDAC_01 4 392.5687866210938 3 392.569365 1174.68626 NaN NaN NaN NaN NaN NaN NaN 40.775 1 36.246 35.746 36.746 -4.5294 0 0 0 0.23581 1 24394 24394 20.415 0 1 29138 5076 19424 19798 34263 34263 0.10590874536364936 KYHLLLQEL 9 Unmodified _KYHLLLQEL_ 0 0 0 ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;nc|ENSG00000090924|Q9H7P9-2|PLEKHG2;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1 ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000134215|Q9UKW4-2|VAV3;ENSG00000141968|ENST00000602142|VAV1 ENSG00000141968|ENST00000602142|VAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2293090820312 3 386.229008 1155.66519 1.3997 0.00054061 0.20935 8.0856E-05 1.6091 0.00062147 386.22912778027734 93.829 0.17905 87.654 87.539 87.718 -6.1757 16 10 2 0 0 0 0.2143 1 62130 62130 20.415 0 1 18879000 29139 4569;5384;1573 19425 19799 34264 34264 0.09358864436876502 KYHNDPRFI 9 Unmodified _KYHNDPRFI_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2086181640625 3 397.208607 1188.60399 0.61482 0.00024421 -0.18624 -7.3978E-05 0.42857 0.00017023 397.20855126339484 27.399 0.64576 24.362 23.873 24.519 -3.0365 48 32 3 0 0 0 0.34999 1 14962 14962 24.991 17.382 1 37224000 29140 7898 19426 19800 34265 34265 0.01723352457429428 KYHPEMRFF 9 Unmodified _KYHPEMRFF_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.912109375 3 418.874459 1253.60155 1.3208 0.00055326 -0.47953 -0.00020086 0.84129 0.00035239 419.20709388483147 85.919 0.80936 79.743 79.513 80.322 -6.1757 86 44 4 0 0 0 0.19633 1 56580 56580 10.151 3.9587 1 13740000 29141 10663 19427 19801 34266 34266 -0.015108192719026192 KYHPRVLYI 9 Unmodified _KYHPRVLYI_ 0 0 0 ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3 ENST00000469550.6_1_5:141001037-141014565:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.9024047851562 3 396.901114 1187.68151 -0.15521 -6.1601E-05 0.21544 8.5507E-05 0.06023 2.3905E-05 396.90112207345595 35.127 0.31268 35.155 34.996 35.309 0.027405 52 14 5 0 0 0 0.036857 2 18506 18506;18617 51.63 39.389 1 38804000 29142 8130 19428 19802 34267;34268 34267 0.09517990393601394 KYHPRVLYI 9 Unmodified _KYHPRVLYI_ 0 0 0 ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3 ENST00000469550.6_1_5:141001037-141014565:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8472290039062 2 594.848033 1187.68151 NaN NaN NaN NaN NaN NaN NaN 35.194 1 35.221 34.721 35.721 0.027401 0 0 0 0.67641 1 18588 18588 10.074 6.1295 1 29143 8130 19428 19802 34269 34269 0.09517990393601394 KYHPRVLYI 9 Unmodified _KYHPRVLYI_ 0 0 0 ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3 ENST00000469550.6_1_5:141001037-141014565:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.9012451171875 3 396.901114 1187.68151 0.98202 0.00038976 0.93225 0.00037001 1.9143 0.00075978 396.90087309260986 39.519 0.33117 35.068 34.876 35.207 -4.4509 39 19 3 0 0 0 0.18144 1 23461 23461 24.991 13.496 1 12030000 29144 8130 19428 19802 34270 34270 0.09517990393601394 KYHPRVLYI 9 Unmodified _KYHPRVLYI_ 0 0 0 ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3 ENST00000469550.6_1_5:141001037-141014565:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.9017333984375 3 396.901114 1187.68151 1.3455 0.00053402 0.031688 1.2577E-05 1.3772 0.0005466 396.9010222829095 88.325 0.57331 82.149 81.938 82.512 -6.1757 84 31 4 0 0 0 0.025842 3 58320 58190;58320;58452 57.722 39.349 1 41013000 29145 8130 19428 19802 34271;34272;34273 34272 0.09517990393601394 KYHQRVLYI 9 Unmodified _KYHQRVLYI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2374572753906 3 407.236385 1218.68733 -0.36587 -0.00014899 1.0782 0.00043908 0.71233 0.00029009 407.2370225326452 30.811 0.51482 30.841 30.477 30.992 0.030104 41 22 3 0 0 0 0.4887 1 16091 16091 8.1555 3.2585 1 2979000 29146 9847;3221 19429 19803 34274 34274 0.0867308890528875 KYHQVDVRF 9 Unmodified _KYHQVDVRF_ 0 0 0 ENST00000556023.1_1_14:65053965-65055014:+|nuORF;ENSG00000165807|ENST00000298705|PPP1R36 ENST00000556023.1_1_14:65053965-65055014:+|nuORF ENST00000556023.1_1_14:65053965-65055014:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1885681152344 3 397.88049 1190.61964 -0.5668 -0.00022552 1.4565 0.00057953 0.88973 0.00035401 397.8808417482709 28.849 0.10192 28.849 28.801 28.903 0 7 4 2 0 0 0 0.21701 1 14897 14897 3.8763 2.1341 1 609370 29147 7392 19430 19804 34275 34275 0.03195638974466419 KYHQVDVRF 9 Unmodified _KYHQVDVRF_ 0 0 0 ENST00000556023.1_1_14:65053965-65055014:+|nuORF;ENSG00000165807|ENST00000298705|PPP1R36 ENST00000556023.1_1_14:65053965-65055014:+|nuORF ENST00000556023.1_1_14:65053965-65055014:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8798522949219 3 397.88049 1190.61964 -0.022438 -8.9275E-06 0.61776 0.00024579 0.59532 0.00023687 398.2152346631928 28.62 0.18676 28.65 28.52 28.706 0.029564 10 6 2 0 0 0 0.47359 1 14912 14912 8.9762 4.0792 1 1794000 29148 7392 19430 19804 34276 34276 0.03195638974466419 KYHQVDVRF 9 Unmodified _KYHQVDVRF_ 0 0 0 ENST00000556023.1_1_14:65053965-65055014:+|nuORF;ENSG00000165807|ENST00000298705|PPP1R36 ENST00000556023.1_1_14:65053965-65055014:+|nuORF ENST00000556023.1_1_14:65053965-65055014:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2142639160156 3 397.88049 1190.61964 0.72731 0.00028938 0.53124 0.00021137 1.2585 0.00050075 398.2149826738018 31.708 0.36661 28.012 27.927 28.293 -3.6958 28 19 2 0 0 0 0.047194 1 17989 17989 46.022 30.484 1 26308000 29149 7392 19430 19804 34277 34277 0.03195638974466419 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.2167053222656 3 396.217102 1185.62948 0.053893 2.1353E-05 0.041953 1.6622E-05 0.095846 3.7976E-05 396.55136942615394 38.044 0.2853 37.772 37.638 37.924 -0.27133 34 13 3 0 0 0 0.27545 1 19990 19990 18.373 15.742 1 7097700 29150 2006 19431 19805 34278 34278 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2175598144531 3 396.217102 1185.62948 -0.21162 -8.3848E-05 0.058349 2.3119E-05 -0.15327 -6.0729E-05 396.21706559883717 37.646 0.44268 37.663 37.479 37.922 0.01704 66 21 5 0 0 0 0.11005 2 19938 19938;20042 32.037 32.037 1 141120000 29151 2006 19431 19805 34279;34280 34279 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8212890625 2 593.822015 1185.62948 -0.21176 -0.00012575 -0.11375 -6.7545E-05 -0.32551 -0.00019329 593.8220124185764 37.646 0.28368 37.663 37.532 37.816 0.01704 35 13 3 0 0 0 0.0015395 1 19975 19975 148.27 112.14 1 19999000 29152 2006 19431 19805 34281 34281 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2181701660156 3 396.217102 1185.62948 0.8948 0.00035453 0.054099 2.1435E-05 0.9489 0.00037597 396.217059503187 42.291 0.38276 37.606 37.364 37.747 -4.6846 58 24 3 0 0 0 0.13231 2 25442 25442;25582 29.841 22.803 1 28085000 29153 2006 19431 19805 34282;34283 34282 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8228759765625 2 593.822015 1185.62948 0.62816 0.00037302 0.96946 0.00057569 1.5976 0.0009487 593.8221046806368 90.121 0.45718 83.945 83.67 84.127 -6.1757 46 25 2 0 0 0 0.0089391 2 59475 59352;59475 125.04 125.04 1 34328000 29154 2006 19431 19805 34284;34285 34285 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2178649902344 3 396.217102 1185.62948 1.0711 0.00042439 0.29363 0.00011634 1.3647 0.00054073 396.2171991103631 90.067 0.53955 83.891 83.631 84.171 -6.1757 59 30 2 0 0 0 0.12357 3 59364 59364;59484;59624 30.703 18.529 1 164320000 29155 2006 19431 19805 34286;34287;34288 34286 0.04408826979852165 KYHTHLLQF 9 Unmodified _KYHTHLLQF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1;ENSG00000173208|ENST00000308666|ABCD2 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MSMS AL20221201_MKP_PDAC_01 4 593.8229370117188 2 593.822015 1185.62948 NaN NaN NaN NaN NaN NaN NaN 42.235 1 37.55 37.05 38.05 -4.6846 0 0 0 0.12961 1 25492 25492 34.932 0 1 29156 2006 19431 19805 34289 34289 0.04408826979852165 KYIAKELGD 9 Unmodified _KYIAKELGD_ 0 0 0 REV__ENST00000207636.9_1_22:19951681-19956256:+|nuORF REV__ENST00000207636.9_1_22:19951681-19956256:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2857666015625 2 518.787307 1035.56006 0.54241 0.00028139 1.4977 0.00077698 2.0401 0.0010584 518.7879979538671 66.651 0.59775 60.476 60.117 60.714 -6.1757 50 33 2 0 0 0 0.32871 1 43180 43180 15.847 1.9411 1 52990000 + 29157 17922 19432 19806 34290 34290 0.043703232404368464 KYIATDFTL 9 Unmodified _KYIATDFTL_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2896728515625 2 536.289682 1070.56481 -0.27756 -0.00014885 0.89601 0.00048052 0.61845 0.00033167 536.2899664660569 60.848 0.50773 60.359 60.05 60.558 -0.48932 56 24 4 0 0 0 0.023481 2 33098 33098;33200 60.074 18.234 1 19589000 29158 1247 19433 19807 34291;34292 34291 0.0323520738318166 KYICENQDSI 10 Unmodified _KYICENQDSI_ 0 0 0 nc|ENSG00000163631|P02768-2|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1 nc|ENSG00000163631|P02768-2|ALB nc|ENSG00000163631|P02768-2|ALB MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8591918945312 3 404.857023 1211.54924 1.3757 0.00055697 0.76733 0.00031066 2.143 0.00086762 404.85846062094305 95.474 0.60254 89.299 88.949 89.552 -6.1757 43 35 2 0 0 0 0.38026 1 63182 63182 22.775 0 1 12316000 + 29159 161 19434 19808 34293 34293 -0.04807447196162684 KYICKAVTF 9 Carbamidomethyl (C) _KYIC(Carbamidomethyl (C))KAVTF_ KYIC(1)KAVTF KYIC(48)KAVTF 0 1 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3;nc|ENSG00000177707|Q9NQS3-2|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3074951171875 2 565.307352 1128.60015 0.59182 0.00033456 -0.5713 -0.00032296 0.020521 1.16E-05 565.3070173807785 38.769 0.2538 34.319 34.191 34.445 -4.4509 26 15 2 0 0 0 0.044296 1 22899 22899 47.594 21.326 1 12212000 29160 16408 19435 19809 34294 34294 1026 0.04099546639326945 KYICPDKINSI 11 Carbamidomethyl (C) _KYIC(Carbamidomethyl (C))PDKINSI_ KYIC(1)PDKINSI KYIC(42)PDKINSI 0 1 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.9092712402344 3 450.907717 1349.70132 1.8008 0.00081197 -0.5726 -0.00025819 1.2282 0.00055378 450.9075389449321 41.729 0.43719 37.121 36.923 37.36 -4.6079 77 27 4 0 0 0 0.10354 2 25015 25015;25151 42.068 31.032 1 57279000 29161 7082 19436 19810 34295;34296 34295 690 0.04045953551394632 KYICPDKINSI 11 Carbamidomethyl (C) _KYIC(Carbamidomethyl (C))PDKINSI_ KYIC(1)PDKINSI KYIC(160)PDKINSI 0 1 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.3601684570312 2 675.857938 1349.70132 1.6951 0.0011457 -0.62484 -0.0004223 1.0703 0.00072335 675.857614356473 41.721 0.3418 37.113 36.969 37.311 -4.6079 56 21 4 0 0 0 8.7996E-29 2 25190 25049;25190 164.85 102.28 1 27451000 29162 7082 19436 19810 34297;34298 34298 690 0.04045953551394632 KYICPYCSRA 10 Unmodified _KYICPYCSRA_ 0 0 0 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7828369140625 2 602.286094 1202.55763 0.3067 0.00018472 -4.4479 -0.0026789 -4.1412 -0.0024942 602.2834496459677 57.242 0.31304 57.242 57.177 57.49 0 18 13 2 0 0 0 0.23412 1 31848 31848 9.3831 2.0939 1 2484800 29163 428 19437 19811 34299 34299 -0.03554171760538338 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1969299316406 3 395.197596 1182.57096 0.35677 0.00014099 0.12352 4.8815E-05 0.48029 0.00018981 395.19738683318184 60.69 0.27499 60.69 60.536 60.811 0 29 11 4 0 0 0 0.23158 1 33820 33820 14.405 10.818 1 1419200 29164 368 19438 19812 34300 34300 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2933959960938 2 592.292756 1182.57096 NaN NaN NaN NaN NaN NaN NaN 60.763 1 60.763 60.263 61.263 0 0 0 0 0.038824 1 33885 33885 62.573 37.173 1 29165 368 19438 19812 34301 34301 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2925415039062 2 592.292756 1182.57096 -0.30137 -0.0001785 0.26641 0.0001578 -0.03496 -2.0706E-05 592.2927756642229 61.209 0.36391 60.719 60.558 60.922 -0.48932 52 17 4 0 0 0 0.0038489 2 33297 33297;33398 122.18 96.78 1 45595000 29166 368 19438 19812 34302;34303 34302 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5313110351562 3 395.197596 1182.57096 -0.30779 -0.00012164 0.29343 0.00011596 -0.014356 -5.6736E-06 395.1976952978776 61.215 0.30173 60.726 60.578 60.88 -0.48932 41 14 4 0 0 0 0.011968 2 33311 33311;33411 59.368 45.462 1 10679000 29167 368 19438 19812 34304;34305 34304 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.29248046875 2 592.292756 1182.57096 0.18218 0.0001079 0.50746 0.00030057 0.68964 0.00040847 592.2926872935551 60.824 0.31373 60.78 60.613 60.927 -0.04351 34 15 3 0 0 0 1.0053E-06 1 33183 33183 163.04 125.06 1 8216400 29168 368 19438 19812 34306 34306 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2932739257812 2 592.292756 1182.57096 -0.054838 -3.248E-05 1.1228 0.00066501 1.0679 0.00063253 592.2932373031209 85.234 1.0503 79.059 78.564 79.615 -6.1757 147 63 3 0 0 0 0.00023314 6 56351 55819;55962;56094;56221;56351;56489 149.91 113.79 1 54367000 29169 368 19438 19812 34307;34308;34309;34310;34311;34312 34311 -0.013022743853071006 KYIDFDHVF 9 Unmodified _KYIDFDHVF_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.1967163085938 3 395.197596 1182.57096 0.31366 0.00012396 -0.042742 -1.6891E-05 0.27092 0.00010707 395.19727701957726 85.23 0.78746 79.055 78.675 79.462 -6.1757 85 48 2 0 0 0 0.0082353 4 56050 55916;56050;56190;56335 78.06 60.948 1 29140000 29170 368 19438 19812 34313;34314;34315;34316 34314 -0.013022743853071006 KYIDKTIRV 9 Unmodified _KYIDKTIRV_ 0 0 0 ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7 ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.234130859375 3 379.232641 1134.67609 NaN NaN NaN NaN NaN NaN NaN 26.783 1 26.811 26.311 27.311 0.028664 0 0 0 0.46232 1 13903 13903 21.59 10.791 1 29171 15708 19439 19813 34317 34317 0.11414266811107154 KYIDKTIRV 9 Unmodified _KYIDKTIRV_ 0 0 0 ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7 ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.233154296875 3 379.232641 1134.67609 1.3995 0.00053075 0.13842 5.2493E-05 1.538 0.00058324 379.2327394142848 30.345 0.31072 26.848 26.698 27.009 -3.497 27 15 2 0 0 0 0.013609 1 17078 17078 64.927 22.971 1 37380000 29172 15708 19439 19813 34318 34318 0.11414266811107154 KYIDKTIRVKF 11 Unmodified _KYIDKTIRVKF_ 0 0 0 ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7 ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.4673767089844 4 353.467144 1409.83947 -0.045689 -1.615E-05 0.33664 0.00011899 0.29095 0.00010284 353.4673100089079 34.718 0.24989 34.745 34.606 34.856 0.027401 29 11 3 0 0 0 0.2736 1 18330 18330 28.181 23.134 1 7715100 29173 15708 19440 19814 34319 34319 0.15094444862143064 KYIDKTIRVKF 11 Unmodified _KYIDKTIRVKF_ 0 0 0 ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7 ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.1968078613281 4 353.467144 1409.83947 1.8654 0.00065936 -0.040356 -1.4264E-05 1.8251 0.0006451 353.4671854786666 79.88 0.34377 73.704 73.448 73.791 -6.1757 27 20 2 0 0 0 0.30445 1 52206 52206 4.4062 1.5629 1 12495000 29174 15708 19440 19814 34320 34320 0.15094444862143064 KYIDQGIAEL 10 Unmodified _KYIDQGIAEL_ 0 0 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3115234375 2 575.311146 1148.60774 0.82437 0.00047427 -0.89889 -0.00051714 -0.074517 -4.287E-05 575.3104280693121 51.025 0.32381 51.025 50.843 51.167 0 56 16 4 0 0 0 0.0015998 2 28100 28100;28217 110.55 49.195 1 59280000 29175 8541 19441 19815 34321;34322 34321 0.039379774406370416 KYIDQGIAEL 10 Unmodified _KYIDQGIAEL_ 0 0 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.310302734375 2 575.311146 1148.60774 0.92927 0.00053462 -2.8796 -0.0016567 -1.9503 -0.0011221 575.3093485065442 57.734 0.33955 51.707 51.496 51.835 -6.0275 29 18 2 0 0 0 0.087164 1 36897 36897 49.527 13.4 1 94789000 29176 8541 19441 19815 34323 34323 0.039379774406370416 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.2254028320312 3 385.225375 1152.6543 0.1313 5.0581E-05 -1.5961 -0.00061486 -1.4648 -0.00056428 385.2244344854196 48.07 0.23372 48.07 47.959 48.193 0 15 11 2 0 0 0 0.40476 1 26341 26341 8.4443 0 1 3044800 29177 1242;6288;2905 19442 19816 34324 34324 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.3345947265625 2 577.334424 1152.6543 0.4108 0.00023717 -0.33059 -0.00019086 0.080213 4.6309E-05 577.3342958815059 48.082 0.19198 48.082 47.978 48.17 0 16 9 2 0 0 0 0.025842 1 26342 26342 57.722 28.64 1 6267200 29178 1242;6288;2905 19442 19816 34325 34325 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3342895507812 2 577.334424 1152.6543 0.5514 0.00031834 -0.22142 -0.00012783 0.32998 0.00019051 577.334216334247 48.287 0.35037 47.915 47.752 48.102 -0.37172 57 17 4 0 0 0 0.011291 2 25859 25859;25968 76.825 41.893 1 87829000 29179 1242;6288;2905 19442 19816 34326;34327 34326 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2251281738281 3 385.225375 1152.6543 0.47585 0.00018331 -0.31199 -0.00012019 0.16385 6.3121E-05 385.2251127227654 48.292 0.31009 47.92 47.771 48.081 -0.37171 56 15 5 0 0 0 0.013041 2 25865 25865;25970 57.249 20.174 1 48720000 29180 1242;6288;2905 19442 19816 34328;34329 34328 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3355712890625 2 577.334424 1152.6543 0.69648 0.0004021 0.23927 0.00013814 0.93575 0.00054024 577.3344751974536 48 0.37891 47.961 47.805 48.184 -0.038643 58 18 5 0 0 0 0.0061279 2 25836 25836;25949 114.19 60.354 1 54250000 29181 1242;6288;2905 19442 19816 34330;34331 34330 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.559814453125 3 385.225375 1152.6543 0.39127 0.00015073 0.066662 2.568E-05 0.45794 0.00017641 385.2252327029955 47.99 0.31741 47.952 47.805 48.122 -0.038643 45 15 4 0 0 0 0.020973 1 25846 25846 49.527 22.304 1 28912000 29182 1242;6288;2905 19442 19816 34332 34332 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.33447265625 2 577.334424 1152.6543 0.61765 0.00035659 0.16695 9.6388E-05 0.78461 0.00045298 577.3344711880476 53.244 0.51387 47.44 47.179 47.693 -5.8042 99 31 4 0 0 0 0.0033077 3 33507 33507;33634;33783 125.04 54.706 1 408620000 29183 1242;6288;2905 19442 19816 34333;34334;34335 34333 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2256164550781 3 385.225375 1152.6543 0.98356 0.00037889 0.28008 0.00010789 1.2636 0.00048679 385.22540477187323 53.253 0.53134 47.449 47.179 47.711 -5.8042 94 32 4 0 0 0 0.009483 3 33516 33516;33635;33786 65.474 21.492 1 265240000 29184 1242;6288;2905 19442 19816 34336;34337;34338 34336 0.08407462062564264 KYIDQKFVL 9 Unmodified _KYIDQKFVL_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;PPP2R5C|p.F208Ifs*3|1|0.25|ENSG00000078304|chr14:101883552-101883553|-/T|frameshift_variant;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3389282226562 2 577.334424 1152.6543 1.3329 0.0007695 1.8269 0.0010547 3.1597 0.0018242 577.3356919167043 63.949 0.84995 57.773 57.391 58.241 -6.1757 68 45 2 0 0 0 0.01085 3 41428 41289;41428;41692 78.06 32.361 1 11881000 29185 1242;6288;2905 19442 19816 34339;34340;34341 34340 0.08407462062564264 KYIDRLIQL 9 Unmodified _KYIDRLIQL_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3535766601562 2 581.353148 1160.69174 0.24411 0.00014192 -0.75939 -0.00044147 -0.51528 -0.00029956 581.3530684160728 56.268 0.18612 56.2 56.134 56.32 -0.068741 14 9 2 0 0 0 0.008513 1 30609 30609 99.755 50.201 1 3330100 29186 9782 19443 19817 34342 34342 0.11782553328202994 KYIDRLIQL 9 Unmodified _KYIDRLIQL_ 0 0 0 ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B ENSG00000196227|ENST00000360816|FAM217B MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.85595703125 2 581.353148 1160.69174 1.133 0.00065864 0.016578 9.6376E-06 1.1495 0.00066828 581.3530464071965 89.027 0.39034 82.852 82.685 83.076 -6.1757 29 21 2 0 0 0 0.0061223 1 58744 58744 114.2 58.025 1 11477000 29187 9782 19443 19817 34343 34343 0.11782553328202994 KYIDYIFNV 9 Unmodified _KYIDYIFNV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8115844726562 2 587.810782 1173.60701 0.67268 0.00039541 0.47148 0.00027714 1.1442 0.00067255 587.810995049137 74.836 0.42877 74.361 74.155 74.584 -0.47588 67 17 5 0 0 0 0.022461 2 40913 40913;41018 75.761 33.921 1 49581000 29188 5077 19444 19818 34344;34345 34344 0.027151827915531612 KYIDYIFNV 9 Unmodified _KYIDYIFNV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8094482421875 2 587.810782 1173.60701 1.1738 0.00068997 -0.87348 -0.00051344 0.30031 0.00017653 587.8101743265613 95.431 0.47501 89.255 89.021 89.496 -6.1757 74 27 3 0 0 0 0.0094802 2 63108 63108;63235 99.755 34.52 1 877710000 29189 5077 19444 19818 34346;34347 34346 0.027151827915531612 KYIDYLMTW 9 Oxidation (M) _KYIDYLM(Oxidation (M))TW_ KYIDYLM(1)TW KYIDYLM(50)TW 0 0 1 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8018188476562 2 624.8021 1247.58965 1.0376 0.00064828 -0.70187 -0.00043853 0.3357 0.00020975 624.8014549966579 66.677 0.30927 66.687 66.519 66.829 0.0095596 35 14 3 0 0 0 0.040683 1 36598 36598 49.554 31.181 1 6492800 29190 3075 19445 19819 34348 34348 533 -0.024244808057346745 KYIDYLMTW 9 Unmodified _KYIDYLMTW_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B;nc|ENSG00000114978|Q9H8S9-2|MOB1A;ENST00000463975.1_1_2:74392309-74405801:-|nuORF;ENST00000509041.5_1_4:71768157-71841035:+|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.8042602539062 2 616.804642 1231.59473 1.0603 0.00065397 -1.1851 -0.00073097 -0.12484 -7.7E-05 616.8037438793492 97.986 0.15928 91.81 91.716 91.875 -6.1757 20 9 3 0 0 0 0.011671 1 64942 64942 75.761 45.92 1 38921000 29191 3075 19445 19820 34349 34349 -0.011801769431258435 KYIEAIQWI 9 Unmodified _KYIEAIQWI_ 0 0 0 nc|ENSG00000164935|Q9H295-2|DCSTAMP;ENSG00000164935|ENST00000297581|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP nc|ENSG00000164935|Q9H295-2|DCSTAMP MSMS AL20221201_MKP_PDAC_01 4 582.3247680664062 2 582.326599 1162.63865 NaN NaN NaN NaN NaN NaN NaN 24.895 1 22.012 21.512 22.512 -2.8831 0 0 0 0.074615 1 13583 13583 49.933 13.806 1 29192 7267 19446 19821 34350 34350 0.06383175545511222 KYIEEQLLQRI 11 Unmodified _KYIEEQLLQRI_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2774047851562 3 478.276798 1431.80856 0.37373 0.00017874 -0.20177 -9.65E-05 0.17196 8.2245E-05 478.61082809910874 58.433 0.27145 57.942 57.798 58.07 -0.49079 30 12 3 0 0 0 0.12646 1 31741 31741 39.413 35.007 1 5820500 29193 2084 19447 19822 34351 34351 0.10993246757266206 KYIEEQLLQRI 11 Unmodified _KYIEEQLLQRI_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2779541015625 3 478.276798 1431.80856 0.79241 0.00037899 -0.47931 -0.00022924 0.3131 0.00014975 478.2765372542135 58.026 0.16266 57.96 57.89 58.053 -0.066036 12 7 2 0 0 0 0.55668 1 31613 31613 13.535 1.3073 1 2018100 29194 2084 19447 19822 34352 34352 0.10993246757266206 KYIEEQLLQRI 11 Unmodified _KYIEEQLLQRI_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2771911621094 3 478.276798 1431.80856 1.2882 0.00061611 0.26568 0.00012707 1.5539 0.00074318 478.2769428863422 86.501 0.48534 80.326 80.103 80.588 -6.1757 51 25 3 0 0 0 0.00051196 2 57071 56954;57071 88.576 75.057 1 15159000 29195 2084 19447 19822 34353;34354 34354 0.10993246757266206 KYIEEQLLQRI 11 Unmodified _KYIEEQLLQRI_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MSMS AL20221201_MKP_PDAC_01 4 716.9124145507812 2 716.911559 1431.80856 NaN NaN NaN NaN NaN NaN NaN 86.427 1 80.252 79.752 80.752 -6.1757 0 0 0 0.00057342 1 56977 56977 106.37 68.19 1 29196 2084 19447 19822 34355 34355 0.10993246757266206 KYIEERLHTL 10 Unmodified _KYIEERLHTL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.5784912109375 3 434.578588 1300.71394 0.23687 0.00010294 0.060988 2.6504E-05 0.29786 0.00012944 434.57863422788415 31.466 0.26283 31.466 31.318 31.58 0 29 12 3 0 0 0 0.021614 1 16386 16386 72.59 52.603 1 8762600 29197 2543 19448 19823 34356 34356 0.0756073300594835 KYIEERLHTL 10 Unmodified _KYIEERLHTL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.5787353515625 3 434.578588 1300.71394 0.18329 7.9654E-05 0.31108 0.00013519 0.49437 0.00021484 434.5786657819419 31.447 0.19215 31.344 31.214 31.406 -0.10269 20 7 4 0 0 0 0.11824 1 16353 16353 59.052 42.778 1 6670700 29198 2543 19448 19823 34357 34357 0.0756073300594835 KYIEERLHTL 10 Unmodified _KYIEERLHTL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7805480957031 3 434.578588 1300.71394 1.1564 0.00050255 0.030693 1.3339E-05 1.1871 0.00051589 434.5783424488903 35.682 0.40824 31.489 31.286 31.694 -4.1928 62 25 4 0 0 0 0.2384 1 20662 20662 5.4027 0.68679 1 29248000 29199 2543 19448 19823 34358 34358 0.0756073300594835 KYIEGVSDF 9 Unmodified _KYIEGVSDF_ 0 0 0 nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP nc|ENSG00000197429|Q9Y573-2|IPP nc|ENSG00000197429|Q9Y573-2|IPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2634887695312 2 529.263665 1056.51278 0.17485 9.254E-05 -0.4474 -0.00023679 -0.27256 -0.00014425 529.2636155373519 45.369 0.28807 45.369 45.209 45.497 0 38 15 4 0 0 0 0.0091809 1 24677 24677 103.35 53.421 1 102200000 29200 9953 19449 19824 34359 34359 -0.013219560305742561 KYIEGVSDF 9 Unmodified _KYIEGVSDF_ 0 0 0 nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP nc|ENSG00000197429|Q9Y573-2|IPP nc|ENSG00000197429|Q9Y573-2|IPP MSMS AL20221201_MKP_PDAC_01 4 529.2627563476562 2 529.263665 1056.51278 NaN NaN NaN NaN NaN NaN NaN 51.659 1 46.01 45.51 46.51 -5.649 0 0 0 0.022336 1 32526 32526 82.529 32.596 1 29201 9953 19449 19824 34360 34360 -0.013219560305742561 KYIEHFSKF 9 Unmodified _KYIEHFSKF_ 0 0 0 ENSG00000005882|ENST00000503176|PDK2;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF ENSG00000005882|ENST00000503176|PDK2 ENSG00000005882|ENST00000503176|PDK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2132263183594 3 400.213358 1197.61824 1.005 0.00040223 -0.35638 -0.00014263 0.64866 0.0002596 400.2132306553275 34.775 0.28473 30.68 30.503 30.788 -4.0951 29 16 2 0 0 0 0.033466 1 20057 20057 53.47 30.811 1 7838500 29202 318 19450 19825 34361 34361 0.027340048857013244 KYIEHFSKF 9 Unmodified _KYIEHFSKF_ 0 0 0 ENSG00000005882|ENST00000503176|PDK2;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF ENSG00000005882|ENST00000503176|PDK2 ENSG00000005882|ENST00000503176|PDK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 400.213358 1197.61824 -0.28408 -0.00011369 0.33841 0.00013544 0.054331 2.1744E-05 400.2131973897877 30.594 0.2388 30.624 30.498 30.737 0.030106 -0.027901 0.0005843 NaN 53.47 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1380600 29203 318 19450 19825 0.027340048857013244 KYIELDTPF 9 Unmodified _KYIELDTPF_ 0 0 0 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3005981445312 2 563.294965 1124.57538 1.0967 0.00061779 1.3112 0.00073856 2.4079 0.0013564 563.2954339720657 80.235 0.32285 79.746 79.587 79.91 -0.48932 25 12 3 0 0 0 0.25681 1 44012 44012 19.257 7.6167 1 2556400 + 29204 20336 19451 19826 34362 34362 0.018071900376071426 KYIENLDNI 9 Unmodified _KYIENLDNI_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2972412109375 2 561.295496 1120.57644 0.46961 0.00026359 1.5302 0.0008589 1.9998 0.0011225 561.2969059794906 46.709 0.19195 46.709 46.607 46.799 0 13 8 2 0 0 0 0.091924 1 25563 25563 34.932 12.274 1 2130500 29205 642 19452 19827 34363 34363 0.020974044065042108 KYIENLDNITF 11 Unmodified _KYIENLDNITF_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.8558959960938 2 685.353542 1368.69253 0.037781 2.5894E-05 0.65015 0.00044558 0.68793 0.00047148 685.3539210519293 66.03 0.29456 66.03 65.88 66.175 0 45 14 5 0 0 0 0.00028183 1 36797 36797 91.085 66.094 1 8621400 29206 642 19453 19828 34364 34364 0.02293303186547746 KYIENLDNITF 11 Unmodified _KYIENLDNITF_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3532104492188 2 685.353542 1368.69253 NaN NaN NaN NaN NaN NaN NaN 66.155 1 66.155 65.655 66.655 0 0 0 0 0.75116 1 36901 36901 14.405 5.66 1 29207 642 19453 19828 34365 34365 0.02293303186547746 KYIENLDNITF 11 Unmodified _KYIENLDNITF_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.3543090820312 2 685.353542 1368.69253 0.15093 0.00010344 0.78756 0.00053976 0.93849 0.0006432 685.3540855174692 66.582 0.35451 66.099 65.88 66.235 -0.48323 59 16 5 0 0 0 0.00063278 2 36295 36295;36398 87.258 66.844 1 26894000 29208 642 19453 19828 34366;34367 34366 0.02293303186547746 KYIENLDNITF 11 Unmodified _KYIENLDNITF_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.3546142578125 2 685.353542 1368.69253 1.1161 0.00076491 -0.10599 -7.2642E-05 1.0101 0.00069226 685.3533556351448 66.048 0.2551 66.058 65.891 66.146 0.0095596 31 12 4 0 0 0 2.5626E-06 1 36216 36216 100.71 69.44 1 11749000 29209 642 19453 19828 34368 34368 0.02293303186547746 KYIENLDNITF 11 Unmodified _KYIENLDNITF_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.3538208007812 2 685.353542 1368.69253 1.1105 0.00076106 1.2 0.00082243 2.3105 0.0015835 685.3542734638128 81.496 1.7544 75.321 74.534 76.288 -6.1757 243 98 3 0 0 0 1.4057E-20 8 53255 53125;53255;53385;53508;53643;53767;53897;54026 143.91 88.607 1 59057000 29210 642 19453 19828 34369;34370;34371;34372;34373;34374;34375;34376 34370 0.02293303186547746 KYIERIITRF 10 Unmodified _KYIERIITRF_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2688903808594 3 446.934595 1337.78196 0.66582 0.00029758 -0.905 -0.00040448 -0.23918 -0.0001069 446.93418412817766 43.694 0.25246 43.679 43.528 43.78 -0.015667 31 11 4 0 0 0 0.5012 1 23395 23395 16.275 12.085 1 60687000 29211 3667 19454 19829 34377 34377 0.12657602656577183 KYIERIITRF 10 Unmodified _KYIERIITRF_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.9352111816406 3 446.934595 1337.78196 1.2826 0.00057325 -0.29422 -0.0001315 0.98841 0.00044176 446.93441111323085 89.683 0.37679 83.508 83.308 83.685 -6.1757 64 20 4 0 0 0 0.25106 2 59131 59131;59251 30.354 17.498 1 85597000 29212 3667 19454 19829 34378;34379 34378 0.12657602656577183 KYIERIITRF 10 Unmodified _KYIERIITRF_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.8980712890625 2 669.898254 1337.78196 0.87687 0.00058741 -0.42649 -0.0002857 0.45038 0.00030171 669.898011569371 89.673 0.23638 83.497 83.362 83.598 -6.1757 16 12 2 0 0 0 0.072854 1 59197 59197 51.765 29.029 1 9467400 29213 3667 19454 19829 34380 34380 0.12657602656577183 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.3079223632812 2 548.307875 1094.6012 0.22365 0.00012263 0.64389 0.00035305 0.86754 0.00047568 548.3083383346166 65.436 0.37549 65.436 65.272 65.648 0 26 14 3 0 0 0 0.078314 1 36474 36474 38.176 9.6887 1 2771200 29214 1790 19455 19830 34381 34381 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.3082885742188 2 548.307875 1094.6012 -0.038473 -2.1095E-05 -1.0692 -0.00058626 -1.1077 -0.00060736 548.307170333334 65.849 0.39215 65.364 65.148 65.54 -0.48428 44 16 3 0 0 0 0.023481 2 35891 35891;35993 60.074 22.1 1 50166000 29215 1790 19455 19830 34382;34383 34382 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3079833984375 2 548.307875 1094.6012 0.70132 0.00038454 -1.3351 -0.00073205 -0.63378 -0.00034751 548.3073575079306 65.363 0.27891 65.363 65.241 65.52 7.6294E-06 26 12 3 0 0 0 0.032796 1 35827 35827 53.833 17.706 1 11721000 29216 1790 19455 19830 34384 34384 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3075561523438 2 548.307875 1094.6012 0.90282 0.00049502 -1.7681 -0.00096948 -0.86531 -0.00047446 548.3056388866893 74.261 0.17484 68.085 67.997 68.172 -6.1757 12 8 2 0 0 0 0.047788 1 48571 48571 45.7 11.597 1 11656000 29217 1790 19455 19830 34385 34385 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.310302734375 2 548.307875 1094.6012 1.0713 0.00058743 0.69172 0.00037928 1.7631 0.00096671 548.3085683935938 79.867 1.1036 73.691 73.132 74.236 -6.1757 114 66 2 0 0 0 0.023481 3 52432 52150;52290;52432 60.074 24.03 1 35742000 29218 1790 19455 19830 34386;34387;34388 34388 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS AL20221201_MKP_PDAC_01 4 548.3076782226562 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 74.622 1 68.447 67.947 68.947 -6.1757 0 0 0 0.091025 1 48786 48786 45.7 9.6554 1 29219 1790 19455 19830 34389 34389 0.05768084279884533 KYIESPVLF 9 Unmodified _KYIESPVLF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MSMS AL20221201_MKP_PDAC_01 4 548.3057250976562 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 77.098 1 70.923 70.423 71.423 -6.1757 0 0 0 0.25233 1 50423 50423 27.629 7.1752 1 29220 1790 19455 19830 34390 34390 0.05768084279884533 KYIESPVLFL 10 Unmodified _KYIESPVLFL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8504638671875 2 604.849907 1207.68526 0.49051 0.00029668 0.25769 0.00015587 0.7482 0.00045255 604.8499263245225 83.709 0.40939 83.211 82.985 83.395 -0.49751 48 16 4 0 0 0 0.10406 2 45856 45752;45856 45.74 9.6129 1 5981500 29221 1790 19456 19831 34391;34392 34392 0.08972615376796966 KYIESPVLFL 10 Unmodified _KYIESPVLFL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.850830078125 2 604.849907 1207.68526 0.70076 0.00042386 1.1904 0.00072 1.8911 0.0011439 604.8505381867136 82.951 0.33897 83.013 82.842 83.181 0.061996 38 12 4 0 0 0 0.078742 2 45847 45847;45954 51.415 15.288 1 12617000 29222 1790 19456 19831 34393;34394 34393 0.08972615376796966 KYIESPVLFL 10 Unmodified _KYIESPVLFL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8489990234375 2 604.849907 1207.68526 -0.43503 -0.00026313 -0.56839 -0.00034379 -1.0034 -0.00060692 604.8494198099514 98.854 0.21391 92.678 92.564 92.778 -6.1757 36 16 3 0 0 0 0.10406 1 65651 65651 45.74 16.658 1 155360000 29223 1790 19456 19831 34395 34395 0.08972615376796966 KYIETTPLTI 10 Unmodified _KYIETTPLTI_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.8369750976562 2 589.836997 1177.65944 0.11621 6.8543E-05 -0.56833 -0.00033522 -0.45213 -0.00026668 589.8362211673265 56.754 0.26784 56.754 56.609 56.877 0 22 11 3 0 0 0 0.16361 1 31590 31590 38.176 3.7738 1 4367900 29224 1150;16051 19457 19832 34396 34396 0.0777172113450888 KYIETTPLTI 10 Unmodified _KYIETTPLTI_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8372802734375 2 589.836997 1177.65944 0.494 0.00029138 -0.77527 -0.00045728 -0.28127 -0.0001659 590.3382177842735 57.235 0.27932 56.745 56.6 56.88 -0.48974 37 12 4 0 0 0 0.043225 1 31115 31115 61.602 17.744 1 5017000 29225 1150;16051 19457 19832 34397 34397 0.0777172113450888 KYIFKERESF 10 Unmodified _KYIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.5757751464844 3 449.574955 1345.70304 0.47311 0.0002127 1.4352 0.00064524 1.9083 0.00085794 449.5754713023392 30.499 0.2414 30.404 30.265 30.506 -0.09535 20 8 3 0 0 0 0.55245 1 15829 15829 16.275 6.7306 1 2379800 29226 5038 19458 19833 34398 34398 0.044013306316628587 KYIFKERESF 10 Unmodified _KYIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.5760498046875 3 449.574955 1345.70304 0.34632 0.0001557 0.94436 0.00042456 1.2907 0.00058026 449.5751888489134 30.251 0.20883 30.281 30.137 30.346 0.030106 19 8 3 0 0 0 0.63089 1 15800 15800 8.7518 5.1647 1 914590 29227 5038 19458 19833 34399 34399 0.044013306316628587 KYIFKERESF 10 Unmodified _KYIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.5760192871094 3 449.574955 1345.70304 1.1058 0.00049716 0.35634 0.0001602 1.4622 0.00065736 449.5751910624821 34.262 0.26138 30.277 30.15 30.411 -3.9853 22 14 2 0 0 0 0.10406 1 19748 19748 33.821 20.949 1 10635000 29228 5038 19458 19833 34400 34400 0.044013306316628587 KYIGENLQL 9 Unmodified _KYIGENLQL_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;nc|ENSG00000132603|Q9Y221-2|NIP7 ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.30078125 2 539.300581 1076.58661 0.44006 0.00023733 -0.60166 -0.00032447 -0.16159 -8.7147E-05 539.3002972360079 50.682 0.31448 50.682 50.518 50.833 0 50 17 4 0 0 0 0.032796 1 27936 27936 53.833 1.5644 1 46167000 29229 4426 19459 19834 34401 34401 0.05138012131760661 KYIGENLQL 9 Unmodified _KYIGENLQL_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;nc|ENSG00000132603|Q9Y221-2|NIP7 ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.300537109375 2 539.300581 1076.58661 -0.00071137 -3.8364E-07 0.015184 8.1888E-06 0.014473 7.8051E-06 539.3007061453951 51.16 0.30043 50.746 50.576 50.876 -0.41351 43 14 4 0 0 0 0.020973 1 27550 27550 62.573 12.64 1 12818000 29230 4426 19459 19834 34402 34402 0.05138012131760661 KYIGENLQL 9 Unmodified _KYIGENLQL_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;nc|ENSG00000132603|Q9Y221-2|NIP7 ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3031005859375 2 539.300581 1076.58661 0.69042 0.00037235 1.122 0.0006051 1.8124 0.00097744 539.301446219804 57.026 0.29439 51.049 50.957 51.252 -5.9769 37 17 3 0 0 0 0.023481 1 36457 36457 60.074 14.374 1 109260000 29231 4426 19459 19834 34403 34403 0.05138012131760661 KYIGENLQLL 10 Unmodified _KYIGENLQLL_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;nc|ENSG00000132603|Q9Y221-2|NIP7 ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.3426513671875 2 595.842613 1189.67067 0.59384 0.00035383 -1.4247 -0.00084888 -0.83084 -0.00049505 595.8416055177983 63.935 0.23061 63.449 63.341 63.572 -0.48512 32 13 3 0 0 0 0.23548 1 34848 34848 31.268 8.5321 1 3864200 29232 4426 19460 19835 34404 34404 0.08342543228650356 KYIGFGPDI 9 Unmodified _KYIGFGPDI_ 0 0 0 REV__ENSG00000147854|ENST00000276893|UHRF2 REV__ENSG00000147854|ENST00000276893|UHRF2 MSMS AL20221201_MKP_PDAC_01 4 505.2726135253906 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 37.752 1 33.383 32.883 33.883 -4.3689 0 0 0 0.18753 1 22190 22190 32.305 2.4649 1 + 29233 20916 19461 19836 34405 34405 0.02410955557274974 KYIHKVHHEF 10 Unmodified _KYIHKVHHEF_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.5759582519531 3 446.57529 1336.70404 0.3066 0.00013692 0.58844 0.00026278 0.89504 0.0003997 446.57557603028175 15.281 0.15273 12.753 12.659 12.812 -2.5273 45 25 3 0 0 0 0.46077 1 7832 7832 16.275 15.06 1 3588300 29234 741 19462 19837 34406 34406 0.04915589791221464 KYIHSANVL 9 Unmodified _KYIHSANVL_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7952880859375 2 522.795466 1043.57638 -0.25034 -0.00013088 -0.16927 -8.8495E-05 -0.41961 -0.00021937 522.7953373016616 27.065 0.26523 27.065 26.93 27.196 0 40 12 4 0 0 0 0.0086209 1 13906 13906 89.401 47.561 1 39033000 29235 2073;1743;1010;5361 19463 19838 34407 34407 0.05633449197171103 KYIHSANVL 9 Unmodified _KYIHSANVL_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7952880859375 2 522.795466 1043.57638 0.34958 0.00018276 0.24515 0.00012816 0.59472 0.00031092 522.7955367538781 27.065 0.1885 27.033 26.92 27.108 -0.031706 22 10 3 0 0 0 0.0047067 1 13904 13904 118.07 59.39 1 75336000 29236 2073;1743;1010;5361 19463 19838 34408 34408 0.05633449197171103 KYIHSANVL 9 Unmodified _KYIHSANVL_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.795654296875 2 522.795466 1043.57638 0.17224 9.0048E-05 -0.17463 -9.1296E-05 -0.0023856 -1.2472E-06 522.795181843697 26.921 0.19936 26.95 26.824 27.023 0.028664 22 8 3 0 0 0 0.0082548 1 13947 13947 96.367 46.434 1 34543000 29237 2073;1743;1010;5361 19463 19838 34409 34409 0.05633449197171103 KYIHSANVL 9 Unmodified _KYIHSANVL_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4 ENSG00000069956|ENST00000261845|MAPK6;ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;ENSG00000141639|ENST00000400384|MAPK4 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.795166015625 2 522.795466 1043.57638 1.1987 0.00062667 -0.35449 -0.00018533 0.8442 0.00044134 522.7952302989521 30.64 0.55835 27.143 26.895 27.453 -3.497 87 26 4 0 0 0 0.0032147 3 17207 17207;17326;17442 125.53 79.508 1 993320000 29238 2073;1743;1010;5361 19463 19838 34410;34411;34412 34410 0.05633449197171103 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(53) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8751525878906 3 392.874236 1175.60088 0.055606 2.1846E-05 1.0893 0.00042796 1.1449 0.0004498 392.8745808425175 38.009 0.5434 38.009 37.604 38.148 0 35 26 2 0 0 0 0.033587 1 20237 20237 53.404 38.156 1 8212200 29239 1550 19464 19839 34413 34413 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(140) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.80859375 2 588.807716 1175.60088 0.1196 7.0424E-05 1.1894 0.0007003 1.309 0.00077073 588.8080762028824 37.997 0.24332 37.997 37.885 38.129 0 22 11 2 0 0 0 0.0013034 1 20246 20246 137.42 85.155 1 6161200 29240 1550 19464 19839 34414 34414 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(53) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8749084472656 3 392.874236 1175.60088 0.033559 1.3184E-05 0.85639 0.00033645 0.88994 0.00034964 392.87460390944415 38.451 0.39636 38.165 37.887 38.283 -0.28687 43 17 3 0 0 0 0.033587 2 20154 20154;20255 53.404 39.885 1 8295800 29241 1550 19464 19839 34415;34416 34415 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(150) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8099975585938 2 588.807716 1175.60088 -0.023588 -1.3889E-05 1.2195 0.00071806 1.1959 0.00070417 588.8083165663188 38.407 0.37478 38.12 37.908 38.283 -0.28687 30 16 2 0 0 0 0.00023314 2 20159 20159;20257 149.91 106.06 1 7516800 29242 1550 19464 19839 34417;34418 34417 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(160) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MSMS AL20221201_MKP_PDAC_01 4 588.8091430664062 2 588.807716 1175.60088 NaN NaN NaN NaN NaN NaN NaN 42.401 1 37.716 37.216 38.216 -4.6846 0 0 0 6.6253E-11 1 25610 25610 155.95 90.719 1 29243 1550 19464 19839 34419 34419 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ KYIIELNHM(1) KYIIELNHM(94) 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MSMS AL20221201_MKP_PDAC_01 4 588.8067626953125 2 588.807716 1175.60088 NaN NaN NaN NaN NaN NaN NaN 42.588 1 37.903 37.403 38.403 -4.6846 0 0 0 0.0094386 1 25747 25747 93.938 57.811 1 29244 1550 19464 19839 34420 34420 260 0.020103412883827332 KYIIELNHM 9 Oxidation (M) _KYIIELNHM(Oxidation (M))_ 0 0 1 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 588.807716 1175.60088 0.10483 6.1722E-05 0.64124 0.00037756 0.74606 0.00043929 588.8086152197349 38.07 0.28896 38.087 37.881 38.17 0.017036 0.019008 -0.00058573 NaN 149.91 23 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1910500 29245 1550 19464 19839 260 0.020103412883827332 KYIIELNHM 9 Unmodified _KYIIELNHM_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.311767578125 2 580.810259 1159.60597 0.38432 0.00022322 0.85597 0.00049716 1.2403 0.00072037 580.8108899156505 48.533 0.17909 48.162 48.021 48.2 -0.37172 13 8 2 0 0 0 0.094149 1 26055 26055 34.402 20.496 1 2315800 29246 1550 19464 19840 34421 34421 0.032546451510143015 KYIIELNHM 9 Unmodified _KYIIELNHM_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.54248046875 3 387.542598 1159.60597 NaN NaN NaN NaN NaN NaN NaN 48.496 1 48.125 47.625 48.625 -0.37172 0 0 0 0.41346 1 26029 26029 13.615 9.4254 1 29247 1550 19464 19840 34422 34422 0.032546451510143015 KYIIELNHM 9 Unmodified _KYIIELNHM_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8096923828125 2 580.810259 1159.60597 0.5862 0.00034047 0.23445 0.00013617 0.82066 0.00047665 580.8105663623165 53.273 0.34057 47.468 47.301 47.642 -5.8042 50 21 3 0 0 0 3.7274E-10 2 33740 33604;33740 168.54 93.609 1 47567000 29248 1550 19464 19840 34423;34424 34424 0.032546451510143015 KYIIELNHM 9 Unmodified _KYIIELNHM_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5429382324219 3 387.542598 1159.60597 0.97685 0.00037857 -0.073977 -2.8669E-05 0.90288 0.0003499 387.5425164556305 53.316 0.37512 47.512 47.284 47.659 -5.8042 53 23 3 0 0 0 0.013041 2 33616 33616;33753 57.249 43.634 1 41039000 29249 1550 19464 19840 34425;34426 34425 0.032546451510143015 KYIIRDTYL 9 Unmodified _KYIIRDTYL_ 0 0 0 REV__ENST00000423427.1_2_3:173114104-173322101:+|nuORF REV__ENST00000423427.1_2_3:173114104-173322101:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5558166503906 3 395.560646 1183.66011 0.45344 0.00017936 -1.5882 -0.00062822 -1.1347 -0.00044886 395.5598793873665 24.49 0.42259 21.663 21.486 21.908 -2.8273 64 23 4 0 0 0 0.2324 1 13426 13426 20.415 10.264 1 28217000 + 29250 26870 19465 19841 34427 34427 0.0756256057425162 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.554931640625 3 411.220513 1230.63971 0.13211 5.4327E-05 1.0075 0.00041429 1.1396 0.00046862 411.554930225558 39.249 0.649 39.249 38.99 39.639 0 45 30 3 0 0 0 0.10134 1 21030 21030 32.898 16.332 1 4268400 29251 1990 19466 19842 34428 34428 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.2203063964844 3 411.220513 1230.63971 -0.026034 -1.0706E-05 0.40171 0.00016519 0.37567 0.00015448 411.2207069881935 39.607 0.57705 39.31 39.091 39.668 -0.29716 66 27 5 0 0 0 0.10134 2 20832 20832;20942 32.898 15.455 1 50227000 29252 1990 19466 19842 34429;34430 34429 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2214050292969 3 411.220513 1230.63971 0.060709 2.4965E-05 1.3204 0.00054298 1.3811 0.00056795 411.2210248947383 39.25 0.40528 39.262 39.042 39.447 0.011452 58 18 4 0 0 0 0.10134 2 20848 20848;20955 32.898 13.536 1 30368000 29253 1990 19466 19842 34431;34432 34431 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.23583984375 3 411.220513 1230.63971 -0.35825 -0.00014732 -0.31241 -0.00012847 -0.67067 -0.00027579 411.2205226215898 37.231 0.13276 37.252 37.195 37.327 0.021545 6 5 2 0 0 0 0.21799 1 19751 19751 3.3196 1.2336 1 468580 29254 1990 19466 19842 34433 34433 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2210388183594 3 411.220513 1230.63971 0.77679 0.00031943 0.51051 0.00020993 1.2873 0.00052936 411.2207351855465 43.846 0.51196 39.081 38.791 39.302 -4.7648 97 32 4 0 0 0 0.10134 2 26680 26557;26680 32.898 10.24 1 132940000 29255 1990 19466 19842 34434;34435 34435 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3283081054688 2 616.327131 1230.63971 0.45982 0.0002834 0.11159 6.8775E-05 0.57141 0.00035217 616.3272562470028 43.833 0.28523 39.069 38.919 39.204 -4.7648 40 17 3 0 0 0 0.0015194 1 26666 26666 125.53 73.261 1 10609000 29256 1990 19466 19842 34436 34436 0.03361389914380197 KYIKDDFRF 9 Unmodified _KYIKDDFRF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2203063964844 3 411.220513 1230.63971 1.0058 0.00041359 0.097575 4.0125E-05 1.1033 0.00045372 411.22040821051627 75.474 1.1427 69.298 68.437 69.58 -6.1757 155 61 3 0 0 0 0.073961 5 49189 48931;49058;49189;49313;49436 39.213 15.455 1 59372000 29257 1990 19466 19842 34437;34438;34439;34440;34441 34439 0.03361389914380197 KYIKKFPLL 9 Unmodified _KYIKKFPLL_ 0 0 0 ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF ENSG00000118420|ENST00000369747|UBE3D ENSG00000118420|ENST00000369747|UBE3D MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9182739257812 3 383.917994 1148.73215 1.6297 0.00062566 -0.074838 -2.8732E-05 1.5548 0.00059693 383.9178103064512 90.879 0.47871 84.703 84.46 84.939 -6.1757 65 28 3 0 0 0 0.42049 1 59985 59985 11.495 0.6952 1 13039000 29258 3370 19467 19843 34442 34442 0.16373519718604257 KYIKSHYKV 9 Unmodified _KYIKSHYKV_ 0 0 0 nc|ENSG00000189060|P07305-2|H1-0;ENSG00000189060|ENST00000340857|H1-0 nc|ENSG00000189060|P07305-2|H1-0 nc|ENSG00000189060|P07305-2|H1-0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2290954589844 3 389.229119 1164.66553 0.50156 0.00019522 0.020625 8.0277E-06 0.52218 0.00020325 389.22899230916033 15.784 0.16241 13.257 13.172 13.334 -2.5273 70 40 2 0 0 0 0.37578 1 8092 8092 13.615 4.8695 1 3250800 29259 9727 19468 19844 34443 34443 0.08978284156683003 KYILVVPLI 9 Unmodified _KYILVVPLI_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6 ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3553466796875 2 529.354628 1056.6947 1.3387 0.00070862 0.33443 0.00017703 1.6731 0.00088565 529.3547254975996 92.116 0.34172 92.146 91.966 92.308 0.030197 30 12 3 0 0 0 0.042911 1 51203 51203 48.346 7.8973 1 8261200 29260 1024 19469 19845 34444 34444 0.16862428452986933 KYILVVPLI 9 Unmodified _KYILVVPLI_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6 ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3553466796875 2 529.354628 1056.6947 1.3471 0.00071307 -0.6818 -0.00036091 0.66526 0.00035216 529.3543078138124 100.12 0.13 93.948 93.884 94.014 -6.1757 20 7 3 0 0 0 0.031062 1 66872 66872 54.774 18.729 1 57572000 29261 1024 19469 19845 34445 34445 0.16862428452986933 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2921142578125 2 550.292756 1098.57096 -0.22334 -0.0001229 -0.74605 -0.00041054 -0.96939 -0.00053345 550.2923050472145 29.745 0.25895 29.745 29.608 29.867 0 46 15 4 0 0 0 2.2949E-06 1 15381 15381 184.36 101.83 1 135000000 29262 1899 19470 19846 34446 34446 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1979370117188 3 367.197596 1098.57096 -0.51689 -0.0001898 -0.015635 -5.7411E-06 -0.53253 -0.00019554 367.19759729123706 29.741 0.23872 29.741 29.608 29.847 0 32 14 4 0 0 0 0.047714 1 15392 15392 45.74 25.325 1 30577000 29263 1899 19470 19846 34447 34447 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.293212890625 2 550.292756 1098.57096 0.67203 0.00036982 -0.51508 -0.00028344 0.15696 8.6372E-05 550.2924209445837 29.695 0.20838 29.615 29.501 29.71 -0.080429 25 9 4 0 0 0 0.0085213 1 15370 15370 117.84 62.335 1 63839000 29264 1899 19470 19846 34448 34448 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.197509765625 3 367.197596 1098.57096 NaN NaN NaN NaN NaN NaN NaN 29.709 1 29.628 29.128 30.128 -0.080429 0 0 0 0.020292 1 15390 15390 78.06 37.821 1 29265 1899 19470 19846 34449 34449 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.292236328125 2 550.292756 1098.57096 0.040997 2.256E-05 0.24836 0.00013667 0.28936 0.00015923 550.2930365227245 29.523 0.21726 29.554 29.415 29.632 0.030106 21 10 3 0 0 0 2.2949E-06 1 15393 15393 184.36 91.702 1 13483000 29266 1899 19470 19846 34450 34450 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1977233886719 3 367.197596 1098.57096 -0.034554 -1.2688E-05 -0.11383 -4.18E-05 -0.14839 -5.4488E-05 367.19783750964604 29.514 0.12026 29.544 29.469 29.589 0.030104 8 5 2 0 0 0 0.076472 1 15418 15418 38.615 19.358 1 3086200 29267 1899 19470 19846 34451 34451 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.29296875 2 550.292756 1098.57096 1.1205 0.00061661 -0.63719 -0.00035064 0.48333 0.00026597 550.2924689046671 33.561 0.84899 29.576 29.284 30.133 -3.9853 130 47 4 0 0 0 1.3752E-06 4 19116 19116;19228;19358;19485 189.73 75.082 1 432770000 29268 1899 19470 19846 34452;34453;34454;34455 34452 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1982116699219 3 367.197596 1098.57096 1.8047 0.0006627 -0.12129 -4.4537E-05 1.6835 0.00061816 367.19752548214376 33.575 0.67002 29.589 29.332 30.002 -3.9853 114 37 4 0 0 0 0.040733 4 19252 19135;19252;19370;19500 49.527 31.154 1 198970000 29269 1899 19470 19846 34456;34457;34458;34459 34457 0.02561725614691568 KYINTDAKF 9 Unmodified _KYINTDAKF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 367.197596 1098.57096 0.6309 0.00023166 -0.169 -6.2057E-05 0.4619 0.00016961 367.19728176373815 29.668 0.075508 29.588 29.525 29.601 -0.080429 -0.027986 -8.4622E-05 NaN 49.527 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 3696600 29270 1899 19470 19846 0.02561725614691568 KYIPAFCEL 9 Carbamidomethyl (C) _KYIPAFC(Carbamidomethyl (C))EL_ KYIPAFC(1)EL KYIPAFC(42)EL 0 1 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.79052734375 2 570.791535 1139.56852 1.1226 0.00064079 -0.25997 -0.00014839 0.86267 0.00049241 571.2931274992235 71.996 1.0613 65.82 65.556 66.618 -6.1757 71 56 2 0 0 0 0.06294 1 47045 47045 41.84 12.758 1 28604000 29271 7240;1908 19471 19847 34460 34460 187 0.004315538853916223 KYIPAFCEL 9 Carbamidomethyl (C) _KYIPAFC(Carbamidomethyl (C))EL_ KYIPAFC(1)EL KYIPAFC(48)EL 0 1 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MSMS AL20221201_MKP_PDAC_01 4 570.7918090820312 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 72.202 1 66.027 65.527 66.527 -6.1757 0 0 0 0.083082 1 47246 47246 47.749 17.112 1 29272 7240;1908 19471 19847 34461 34461 187 0.004315538853916223 KYIPAFCEL 9 Carbamidomethyl (C) _KYIPAFC(Carbamidomethyl (C))EL_ KYIPAFC(1)EL KYIPAFC(54)EL 0 1 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MSMS AL20221201_MKP_PDAC_01 4 570.7913208007812 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 72.41 1 66.234 65.734 66.734 -6.1757 0 0 0 0.059498 1 47377 47377 53.833 26.949 1 29273 7240;1908 19471 19847 34462 34462 187 0.004315538853916223 KYIPAFCEL 9 Carbamidomethyl (C) _KYIPAFC(Carbamidomethyl (C))EL_ KYIPAFC(1)EL KYIPAFC(69)EL 0 1 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MSMS AL20221201_MKP_PDAC_01 4 570.7920532226562 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 72.598 1 66.423 65.923 66.923 -6.1757 0 0 0 0.027645 1 47494 47494 69.105 40.618 1 29274 7240;1908 19471 19847 34463 34463 187 0.004315538853916223 KYIPAFCEL 9 Carbamidomethyl (C) _KYIPAFC(Carbamidomethyl (C))EL_ KYIPAFC(1)EL KYIPAFC(69)EL 0 1 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MSMS AL20221201_MKP_PDAC_01 4 570.7920532226562 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 72.785 1 66.61 66.11 67.11 -6.1757 0 0 0 0.027645 1 47613 47613 69.105 38.468 1 29275 7240;1908 19471 19847 34464 34464 187 0.004315538853916223 KYIPKQSFL 9 Unmodified _KYIPKQSFL_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.328857421875 2 562.329142 1122.64373 0.29841 0.00016781 1.2154 0.00068346 1.5138 0.00085126 562.3297986531802 37.248 0.2672 37.269 37.108 37.375 0.021542 33 11 4 0 0 0 0.033747 1 19732 19732 66.457 36.616 1 7482500 29276 3827 19472 19848 34465 34465 0.08731479408129417 KYIPKQSFL 9 Unmodified _KYIPKQSFL_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2222900390625 3 375.221853 1122.64373 -0.18558 -6.9635E-05 1.4659 0.00055005 1.2803 0.00048041 375.2224596389748 37.267 0.24511 37.288 37.13 37.375 0.021545 23 10 3 0 0 0 0.40476 1 19761 19761 12.241 0 1 2351900 29277 3827 19472 19848 34466 34466 0.08731479408129417 KYIPKQSFL 9 Unmodified _KYIPKQSFL_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 562.329142 1122.64373 1.0115 0.00056878 0.2544 0.00014305 1.2659 0.00071183 562.3292587808637 42.065 0.4191 37.38 37.173 37.592 -4.6846 0.055422 -0.00058614 NaN 66.457 59 26 3 NaN NaN NaN NaN 0 NaN NaN 0 23008000 29278 3827 19472 19848 0.08731479408129417 KYIPLPQRV 9 Unmodified _KYIPLPQRV_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;ENST00000570284.1_1_16:28840745-28842349:+|nuORF;ENST00000564284.1_1_16:28841101-28842119:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3426513671875 2 557.342584 1112.67061 0.49805 0.00027758 0.30178 0.0001682 0.79983 0.00044578 557.3425578251445 39.063 0.2124 39.074 38.962 39.174 0.011452 17 9 2 0 0 0 0.031062 1 20772 20772 54.774 25.692 1 2907300 29279 7770 19473 19849 34467 34467 0.11878588019317249 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8478393554688 2 593.847167 1185.67978 1.1232 0.000667 -0.19624 -0.00011653 0.92694 0.00055046 593.8469613400912 46.632 0.40399 46.599 46.39 46.794 -0.033417 71 19 5 0 0 0 0.0081887 2 25031 25031;25135 103.75 61.654 1 72244000 29280 8367 19474 19850 34468;34469 34468 0.09436936584984323 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2342834472656 3 396.23387 1185.67978 1.1235 0.00044518 -0.25115 -9.9514E-05 0.87237 0.00034566 396.23371100611126 46.629 0.34279 46.595 46.431 46.774 -0.033421 57 16 5 0 0 0 0.085319 2 25042 25042;25150 36.506 26.962 1 31822000 29281 8367 19474 19850 34470;34471 34470 0.09436936584984323 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8472900390625 2 593.847167 1185.67978 0.25558 0.00015178 0.40831 0.00024248 0.66389 0.00039425 593.8471654191849 51.67 0.37317 46.021 45.863 46.236 -5.649 57 23 3 0 0 0 0.013118 2 32488 32488;32612 88.954 38.099 1 67903000 29282 8367 19474 19850 34472;34473 34472 0.09436936584984323 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2344055175781 3 396.23387 1185.67978 0.71999 0.00028529 0.43276 0.00017147 1.1528 0.00045676 396.234078601072 51.732 0.35923 45.998 45.762 46.121 -5.7345 34 22 2 0 0 0 0.040683 2 32504 32504;32640 49.554 35.939 1 59644000 29283 8367 19474 19850 34474;34475 34474 0.09436936584984323 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 396.2347717285156 3 396.23387 1185.67978 NaN NaN NaN NaN NaN NaN NaN 70.676 1 64.5 64 65 -6.1757 0 0 0 0.17798 1 46196 46196 33.445 25.001 1 29284 8367 19474 19850 34476 34476 0.09436936584984323 KYIPYKYVI 9 Unmodified _KYIPYKYVI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 593.847167 1185.67978 0.69498 0.00041271 0.18033 0.00010709 0.87531 0.0005198 593.8475636297788 46.898 0.162 46.561 46.462 46.624 -0.33664 -0.018987 0.00039974 NaN 103.75 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1589000 29285 8367 19474 19850 0.09436936584984323 KYIQEAEML 9 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ KYIQEAEM(1)L KYIQEAEM(100)L 0 0 1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7835083007812 2 570.783907 1139.55326 -0.10067 -5.7463E-05 -0.67945 -0.00038782 -0.78013 -0.00044529 570.7836303555367 35.274 0.36992 35.274 35.072 35.442 0 69 18 5 0 0 0 0.0085164 2 18677 18576;18677 99.799 53.778 1 234530000 29286 1917 19475 19851 34477;34478 34478 321 -0.01093357702461617 KYIQEAEML 9 Oxidation (M) _KYIQEAEM(Oxidation (M))L_ KYIQEAEM(1)L KYIQEAEM(82)L 0 0 1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7840576171875 2 570.783907 1139.55326 0.90593 0.00051709 -0.57937 -0.0003307 0.32655 0.00018639 570.7835741533095 40.603 0.67778 36.073 35.695 36.373 -4.5294 112 42 4 0 0 0 0.009483 2 24354 24223;24354 81.89 41.933 1 122470000 29287 1917 19475 19851 34479;34480 34480 321 -0.01093357702461617 KYIQEAEML 9 Unmodified _KYIQEAEML_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.288818359375 2 562.78645 1123.55835 -0.19055 -0.00010724 -0.21514 -0.00012108 -0.40568 -0.00022831 562.7856766848664 44.794 0.17601 44.794 44.73 44.906 0 11 8 2 0 0 0 0.014417 1 24420 24420 69.105 33.061 1 15746000 29288 1917 19475 19852 34481 34481 0.0015094616016995133 KYIQEAEML 9 Unmodified _KYIQEAEML_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7881469726562 2 562.78645 1123.55835 1.2423 0.00069916 -0.90333 -0.00050838 0.33898 0.00019078 562.785921668583 50.81 0.48928 45.161 44.926 45.415 -5.649 76 29 3 0 0 0 0.0088174 2 31798 31798;31921 103.75 39.512 1 217580000 29289 1917 19475 19852 34482;34483 34482 0.0015094616016995133 KYIQKPGLL 9 Unmodified _KYIQKPGLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3317260742188 2 530.331685 1058.64882 -0.37685 -0.00019986 0.49693 0.00026354 0.12008 6.368E-05 530.3319308159973 34.878 0.23175 34.686 34.584 34.815 -0.19131 23 9 3 0 0 0 0.019303 1 18241 18241 64.236 32.119 1 5582000 29290 9082 19476 19853 34484 34484 0.12183783270756976 KYIQKPGLL 9 Unmodified _KYIQKPGLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3323974609375 2 530.331685 1058.64882 0.084324 4.472E-05 0.11096 5.8847E-05 0.19529 0.00010357 530.3316988154069 34.613 0.31807 34.64 34.478 34.796 0.027401 44 14 4 0 0 0 0.00856 2 18212 18212;18318 100.37 46.796 1 50071000 29291 9082 19476 19853 34485;34486 34485 0.12183783270756976 KYIQKPGLL 9 Unmodified _KYIQKPGLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8909301757812 3 353.890215 1058.64882 -0.028687 -1.0152E-05 0.51418 0.00018196 0.48549 0.00017181 353.89035991382656 34.614 0.25294 34.641 34.5 34.753 0.027401 35 11 4 0 0 0 0.095405 1 18229 18229 31.268 3.6395 1 13502000 29292 9082 19476 19853 34487 34487 0.12183783270756976 KYIQKPGLL 9 Unmodified _KYIQKPGLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.33203125 2 530.331685 1058.64882 0.87379 0.0004634 -0.13196 -6.9985E-05 0.74183 0.00039342 530.3315807999047 39.117 0.42334 34.666 34.472 34.896 -4.4509 88 26 4 0 0 0 0.010818 2 23076 23076;23212 78.149 32.128 1 126040000 29293 9082 19476 19853 34488;34489 34488 0.12183783270756976 KYIQKPGLL 9 Unmodified _KYIQKPGLL_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.890869140625 3 353.890215 1058.64882 1.5736 0.00055688 0.20579 7.2827E-05 1.7794 0.0006297 353.890246739481 39.128 0.48486 34.677 34.445 34.929 -4.4509 88 30 4 0 0 0 0.06187 2 23213 23079;23213 38.176 4.5764 1 106260000 29294 9082 19476 19853 34490;34491 34491 0.12183783270756976 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5555419921875 3 393.555784 1177.64552 -0.37469 -0.00014746 -0.017336 -6.8228E-06 -0.39203 -0.00015428 393.5557557763508 20.231 0.23708 20.26 20.135 20.372 0.028357 40 11 5 0 0 0 0.018301 1 10213 10213 51.415 15.803 1 16888000 29295 6530 19477 19854 34492 34492 0.0638048842608896 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8297119140625 2 589.830037 1177.64552 -0.4107 -0.00024224 -0.19029 -0.00011224 -0.60099 -0.00035448 589.8299202446308 20.235 0.1954 20.264 20.176 20.372 0.028355 24 9 3 0 0 0 0.0032147 1 10222 10222 125.53 87.555 1 4082900 29296 6530 19477 19854 34493 34493 0.0638048842608896 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8309326171875 2 589.830037 1177.64552 0.13787 8.1317E-05 0.076051 4.4857E-05 0.21392 0.00012617 589.8300459735381 20.287 0.19957 20.297 20.189 20.388 0.010553 29 11 3 0 0 0 0.085319 1 10310 10310 36.506 21.668 1 5783700 29297 6530 19477 19854 34494 34494 0.0638048842608896 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5559692382812 3 393.555784 1177.64552 0.36433 0.00014339 -1.1139 -0.00043838 -0.74956 -0.00029499 393.5552320342373 23.189 0.8001 20.41 20.058 20.858 -2.7784 235 58 6 0 0 0 0.018301 3 12631 12415;12523;12631 55.503 28.64 1 1932899999.9999998 29298 6530 19477 19854 34495;34496;34497 34497 0.0638048842608896 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8301391601562 2 589.830037 1177.64552 0.023824 1.4052E-05 -0.41488 -0.00024471 -0.39106 -0.00023066 589.8297511880413 23.2 0.56727 20.421 20.132 20.7 -2.7784 180 44 5 0 0 0 0.0038489 3 12421 12421;12530;12641 122.18 76.158 1 672510000 29299 6530 19477 19854 34498;34499;34500 34498 0.0638048842608896 KYIQRQETI 9 Unmodified _KYIQRQETI_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 589.830037 1177.64552 -0.42046 -0.000248 -0.77866 -0.00045927 -1.1991 -0.00070728 589.8295643467898 20.39 0.2608 20.39 20.27 20.531 0 0.047186 -0.00035363 NaN 125.53 155 36 5 NaN NaN NaN NaN 0 NaN NaN 0 125500000 29300 6530 19477 19854 0.0638048842608896 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5617065429688 3 393.227779 1176.66151 -0.53377 -0.00020989 0.5845 0.00022984 0.050729 1.9948E-05 393.2280168659021 19.064 0.14644 19.064 18.983 19.13 0 27 9 4 0 0 0 0.18144 1 9500 9500 24.991 10.773 1 5398900 29301 9152 19478 19855 34501 34501 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.2279663085938 3 393.227779 1176.66151 -0.53484 -0.00021031 0.76045 0.00029903 0.22561 8.8717E-05 393.22805544792254 18.946 0.1762 18.969 18.874 19.05 0.023106 33 11 4 0 0 0 0.040683 1 9512 9512 49.554 19.714 1 17042000 29302 9152 19478 19855 34502 34502 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3389892578125 2 589.33803 1176.66151 -0.58129 -0.00034257 0.57169 0.00033692 -0.0095967 -5.6557E-06 589.338330076428 18.942 0.12197 18.965 18.902 19.023 0.023106 18 7 3 0 0 0 0.01085 1 9519 9519 66.457 30.33 1 2979000 29303 9152 19478 19855 34503 34503 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2279357910156 3 393.227779 1176.66151 -0.028133 -1.1063E-05 0.23199 9.1225E-05 0.20386 8.0162E-05 393.2278617614369 18.991 0.17772 18.997 18.901 19.079 0.0060463 27 9 4 0 0 0 0.078314 1 9634 9634 38.176 13.294 1 17004000 29304 9152 19478 19855 34504 34504 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8391723632812 2 589.33803 1176.66151 0.1433 8.4452E-05 -0.15645 -9.2202E-05 -0.01315 -7.75E-06 589.3378665264947 18.989 0.12655 18.995 18.935 19.061 0.0060463 14 6 3 0 0 0 0.044042 1 9641 9641 51.63 15.503 1 2962400 29305 9152 19478 19855 34505 34505 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3380737304688 2 589.33803 1176.66151 1.0877 0.00064103 -0.96836 -0.00057069 0.11934 7.0334E-05 589.337473132717 21.228 0.35012 18.535 18.321 18.671 -2.693 65 22 4 0 0 0 1.9201E-06 2 11259 11259;11358 176.84 111.6 1 71468000 29306 9152 19478 19855 34506;34507 34506 0.08024194662993978 KYIQRQQTI 9 Unmodified _KYIQRQQTI_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2281188964844 3 393.227779 1176.66151 1.4307 0.00056261 -0.44549 -0.00017518 0.98525 0.00038743 393.22766186718775 21.234 0.64083 18.541 18.283 18.924 -2.693 116 42 5 0 0 0 0.11784 2 11368 11265;11368 31.268 13.405 1 248080000 29307 9152 19478 19855 34508;34509 34509 0.08024194662993978 KYIRKHHLLRH 11 Unmodified _KYIRKHHLLRH_ 0 0 0 REV__nc|ENSG00000052802|Q15800-2|MSMO1 REV__nc|ENSG00000052802|Q15800-2|MSMO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 750.9548950195312 2 750.954761 1499.89497 NaN NaN NaN NaN NaN NaN NaN 97.608 1 97.608 97.108 98.108 0 0 0 0 0.9435 1 53929 53929 0 0 1 + 29308 17272 19479 19856 34510 34510 0.16501715893150504 KYISFEER 8 Unmodified _KYISFEER_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8523559570312 3 357.85383 1070.53966 0.27621 9.8842E-05 2.2299 0.00079796 2.5061 0.0008968 357.85477231277383 37.008 0.2812 37.008 36.878 37.159 0 37 13 4 0 0 0 0.75262 1 19647 19647 9.3831 2.66 1 4852900 29309 3147 19480 19857 34511 34511 0.007211525806042118 KYISFEER 8 Unmodified _KYISFEER_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8526306152344 3 357.85383 1070.53966 1.8649 0.00066736 0.64875 0.00023216 2.5136 0.00089951 357.85447108467366 41.946 0.33858 37.261 37.067 37.406 -4.6846 38 21 2 0 0 0 0.75262 1 25300 25300 9.3831 3.6513 1 17767000 29310 3147 19480 19857 34512 34512 0.007211525806042118 KYISGPHEL 9 Unmodified _KYISGPHEL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2791137695312 2 522.279649 1042.54475 -0.21146 -0.00011044 0.20539 0.00010727 -0.0060755 -3.1731E-06 522.2796937178157 26.724 0.31589 26.724 26.53 26.846 0 46 14 4 0 0 0 0.0087807 2 13694 13694;13788 106.94 50.763 1 27609000 29311 3335 19481 19858 34513;34514 34513 0.025174564432290936 KYISGPHEL 9 Unmodified _KYISGPHEL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7817993164062 2 522.279649 1042.54475 0.30542 0.00015951 -0.1185 -6.189E-05 0.18692 9.7623E-05 522.2795094489636 26.681 0.094101 26.65 26.589 26.683 -0.031708 9 5 2 0 0 0 0.0030184 1 13718 13718 126.57 55.432 1 10512000 29312 3335 19481 19858 34515 34515 0.025174564432290936 KYISGPHEL 9 Unmodified _KYISGPHEL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2802734375 2 522.279649 1042.54475 0.16196 8.4589E-05 -0.49666 -0.00025939 -0.3347 -0.00017481 522.2798087780894 26.547 0.16596 26.574 26.446 26.612 0.026951 11 6 3 0 0 0 0.015688 1 13769 13769 67.838 19.492 1 2022100 29313 3335 19481 19858 34516 34516 0.025174564432290936 KYISGPHEL 9 Unmodified _KYISGPHEL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2811889648438 2 522.279649 1042.54475 0.71897 0.0003755 0.050197 2.6217E-05 0.76916 0.00040172 522.2795481908349 30.102 0.40423 26.605 26.393 26.797 -3.497 52 19 3 0 0 0 0.0013034 2 16884 16884;16994 137.42 65.502 1 198500000 29314 3335 19481 19858 34517;34518 34517 0.025174564432290936 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3089599609375 2 546.308406 1090.60226 -0.2108 -0.00011516 -0.34414 -0.00018801 -0.55494 -0.00030317 546.3081621036306 24.582 0.33426 24.582 24.426 24.76 0 74 18 5 0 0 0 0.0038962 2 12517 12517;12618 143.91 61.38 1 126590000 29315 2052 19482 19859 34519;34520 34519 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5415954589844 3 364.541363 1090.60226 -0.39052 -0.00014236 -0.049689 -1.8114E-05 -0.44021 -0.00016048 364.54131844879095 24.579 0.33431 24.579 24.405 24.739 0 65 18 5 0 0 0 0.13231 2 12525 12525;12627 29.841 14.082 1 102150000 29316 2052 19482 19859 34521;34522 34521 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3082275390625 2 546.308406 1090.60226 0.015119 8.2595E-06 0.17696 9.6672E-05 0.19207 0.00010493 546.3084327434026 24.863 0.23148 24.861 24.713 24.944 -0.0016766 22 9 3 0 0 0 0.0015194 1 12685 12685 137.42 55.534 1 17660000 29317 2052 19482 19859 34523 34523 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.5414733886719 3 364.541363 1090.60226 0.12876 4.6937E-05 -0.099248 -3.618E-05 0.029509 1.0757E-05 364.5411433668907 24.527 0.17292 24.551 24.441 24.613 0.024427 14 6 3 0 0 0 0.098164 1 12634 12634 33.445 10.787 1 9453900 29318 2052 19482 19859 34524 34524 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.81005859375 2 546.308406 1090.60226 0.20441 0.00011167 -0.23308 -0.00012733 -0.028666 -1.566E-05 546.3080990169776 24.506 0.19297 24.53 24.42 24.613 0.024429 16 7 3 0 0 0 0.008597 1 12639 12639 107.1 49.378 1 13891000 29319 2052 19482 19859 34525 34525 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3079833984375 2 546.308406 1090.60226 0.32965 0.00018009 -0.12975 -7.0885E-05 0.1999 0.00010921 546.3082728092905 27.909 0.53788 24.761 24.503 25.041 -3.1482 111 28 5 0 0 0 0.0060143 3 15392 15392;15509;15633 128.93 55.964 1 865130000 29320 2052 19482 19859 34526;34527;34528 34526 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5415954589844 3 364.541363 1090.60226 1.0713 0.00039054 -0.22673 -8.2653E-05 0.84459 0.00030789 364.54124741831964 27.904 0.5551 24.756 24.503 25.059 -3.1482 116 29 5 0 0 0 0.069655 3 15521 15402;15521;15648 40.239 18.649 1 817990000 29321 2052 19482 19859 34529;34530;34531 34530 0.060582986487816015 KYISKPENL 9 Unmodified _KYISKPENL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 364.541363 1090.60226 0.15705 5.725E-05 0.037484 1.3665E-05 0.19453 7.0915E-05 364.5413713163413 24.865 0.20892 24.864 24.735 24.944 -0.0016766 0.17614 0.00020303 NaN 40.239 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 15950000 29322 2052 19482 19859 0.060582986487816015 KYISKPENLKL 11 Unmodified _KYISKPENLKL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.9343566894531 3 444.934372 1331.78129 -0.19099 -8.4978E-05 0.50918 0.00022655 0.31819 0.00014157 444.9345275588858 32.393 0.34729 32.264 32.069 32.416 -0.12915 47 14 4 0 0 0 0.43683 1 16838 16838 19.615 9.8511 1 31301000 29323 2052 19483 19860 34532 34532 0.12866763216879917 KYISKPENLKL 11 Unmodified _KYISKPENLKL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.9343566894531 3 444.934372 1331.78129 0.17732 7.8895E-05 -0.091058 -4.0515E-05 0.08626 3.838E-05 444.93415912093207 32.259 0.33644 32.289 32.13 32.466 0.029743 51 14 5 0 0 0 0.012962 1 16898 16898 64.688 46.348 1 103910000 29324 2052 19483 19860 34533 34533 0.12866763216879917 KYISKPENLKL 11 Unmodified _KYISKPENLKL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.9349060058594 3 444.934372 1331.78129 0.65215 0.00029016 0.44745 0.00019909 1.0996 0.00048925 444.9343244488371 36.503 0.56381 32.266 32.022 32.586 -4.237 101 34 4 0 0 0 0.0079153 2 21223 21223;21344 70.345 38.883 1 252860000 29325 2052 19483 19860 34534;34535 34534 0.12866763216879917 KYISKPENLKL 11 Unmodified _KYISKPENLKL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.8981323242188 2 666.89792 1331.78129 0.22369 0.00014918 0.066964 4.4658E-05 0.29065 0.00019384 666.8977374050697 36.532 0.26144 32.249 32.127 32.388 -4.2835 31 16 3 0 0 0 5.1509E-06 1 21324 21324 101.12 61.903 1 16605000 29326 2052 19483 19860 34536 34536 0.12866763216879917 KYISKPENLKL 11 Unmodified _KYISKPENLKL_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000493540.1_1_2:231678823-231682621:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 444.934372 1331.78129 -1.004 -0.00044672 1.0667 0.00047461 0.062686 2.7891E-05 444.9344551122608 32.377 0.15295 32.377 32.261 32.414 0 0.077763 0.00096462 NaN 70.345 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 5120000 29327 2052 19483 19860 0.12866763216879917 KYISPETMVAL 11 Unmodified _KYISPETMVAL_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3358764648438 2 626.336307 1250.65806 0.27368 0.00017142 0.22237 0.00013928 0.49605 0.0003107 626.336761472157 63.085 0.22763 62.599 62.522 62.75 -0.48617 22 10 3 0 0 0 0.29175 1 34393 34393 27.223 3.2027 1 2301300 29328 1936 19484 19861 34537 34537 0.04275763774126062 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2222595214844 3 360.221742 1077.6434 0.15375 5.5384E-05 1.3807 0.00049737 1.5345 0.00055276 360.2222887049808 50.504 0.21088 50.504 50.411 50.622 0 14 9 2 0 0 0 0.19349 1 27851 27851 23.801 8.0624 1 1306400 29329 3541 19485 19862 34538 34538 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.8294067382812 2 539.828975 1077.6434 0.3128 0.00016886 0.28971 0.00015639 0.6025 0.00032525 539.8290524064591 50.506 0.21088 50.506 50.411 50.622 0 17 9 2 0 0 0 0.018846 1 27863 27863 78.06 41.933 1 3704400 29330 3541 19485 19862 34539 34539 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8287353515625 2 539.828975 1077.6434 0.25063 0.0001353 0.33514 0.00018092 0.58578 0.00031622 539.8291183630163 50.945 0.36064 50.531 50.358 50.718 -0.41351 62 17 5 0 0 0 0.0038962 2 27400 27400;27504 143.91 87.732 1 50027000 29331 3541 19485 19862 34540;34541 34540 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2221374511719 3 360.221742 1077.6434 0.37749 0.00013598 0.29104 0.00010484 0.66853 0.00024082 360.2218489924522 50.959 0.32234 50.545 50.376 50.698 -0.41351 48 15 4 0 0 0 0.040733 2 27416 27416;27517 49.527 33.789 1 24392000 29332 3541 19485 19862 34542;34543 34542 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8290405273438 2 539.828975 1077.6434 0.91166 0.00049214 -0.19228 -0.0001038 0.71939 0.00038835 539.8288375358841 50.591 0.3008 50.537 50.368 50.669 -0.053871 46 14 4 0 0 0 0.0046551 2 27315 27315;27420 140.63 92.884 1 25070000 29333 3541 19485 19862 34544;34545 34544 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2219848632812 3 360.221742 1077.6434 0.82394 0.0002968 -0.1645 -5.9258E-05 0.65944 0.00023754 360.2216741227732 50.574 0.32224 50.52 50.347 50.669 -0.053871 43 15 4 0 0 0 0.040733 1 27324 27324 49.527 30.806 1 12261000 29334 3541 19485 19862 34546 34546 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8290405273438 2 539.828975 1077.6434 0.48603 0.00026237 -0.019116 -1.0319E-05 0.46691 0.00025205 539.8288768909313 56.642 0.54634 50.665 50.395 50.941 -5.9769 92 31 4 0 0 0 0.0069133 2 36184 36049;36184 132.38 90.54 1 312870000 29335 3541 19485 19862 34547;34548 34548 0.10768059688280118 KYITDVVKL 9 Unmodified _KYITDVVKL_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2224426269531 3 360.221742 1077.6434 1.3002 0.00046837 0.11828 4.2609E-05 1.4185 0.00051097 360.22177550153447 56.61 0.54786 50.633 50.375 50.923 -5.9769 78 31 3 0 0 0 0.026499 3 36187 36053;36187;36340 57.249 33.448 1 137420000 29336 3541 19485 19862 34549;34550;34551 34550 0.10768059688280118 KYITDWQNVF 10 Unmodified _KYITDWQNVF_ 0 0 0 ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6 ENST00000505526.1_1_5:271863-311637:+|nuORF ENST00000505526.1_1_5:271863-311637:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3303833007812 2 657.32987 1312.64519 0.54557 0.00035862 0.51952 0.00034149 1.0651 0.00070011 657.3300649366082 71.522 0.46796 71.045 70.747 71.215 -0.47735 49 15 4 0 0 0 0.01074 2 39180 39082;39180 86.332 63.596 1 11054000 29337 14514 19486 19863 34552;34553 34553 0.0013706870620353584 KYITDWQNVF 10 Unmodified _KYITDWQNVF_ 0 0 0 ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6 ENST00000505526.1_1_5:271863-311637:+|nuORF ENST00000505526.1_1_5:271863-311637:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.331298828125 2 657.32987 1312.64519 1.5762 0.0010361 -0.24257 -0.00015945 1.3337 0.00087665 657.3296263912847 70.989 0.56826 71.024 70.835 71.403 0.035515 82 25 5 0 0 0 0.022967 2 39123 39019;39123 72.968 58.13 1 114190000 29338 14514 19486 19863 34554;34555 34555 0.0013706870620353584 KYITDWQNVF 10 Unmodified _KYITDWQNVF_ 0 0 0 ENST00000505526.1_1_5:271863-311637:+|nuORF;nc|ENSG00000249915|O75340-2|PDCD6;ENSG00000249915|ENST00000264933|PDCD6 ENST00000505526.1_1_5:271863-311637:+|nuORF ENST00000505526.1_1_5:271863-311637:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.832763671875 2 657.32987 1312.64519 0.96435 0.00063389 0.047599 3.1288E-05 1.0119 0.00066518 657.3298759378324 89.186 1.0863 83.01 82.494 83.58 -6.1757 196 60 4 0 0 0 0.003386 6 58586 58586;58712;58844;58969;59092;59222 103.42 75.791 1 207230000 29339 14514 19486 19863 34556;34557;34558;34559;34560;34561 34556 0.0013706870620353584 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5485534667969 3 394.548629 1180.62406 0.010397 4.102E-06 -0.63002 -0.00024857 -0.61962 -0.00024447 394.54842067946237 38.963 0.24603 38.676 38.541 38.787 -0.28687 15 10 2 0 0 0 0.030212 1 20524 20524 55.235 33.644 1 3595700 29340 8459 19487 19864 34562 34562 0.040971033973846716 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2147216796875 3 394.548629 1180.62406 -0.00096142 -3.7933E-07 -0.21163 -8.3499E-05 -0.21259 -8.3878E-05 394.8828312091756 38.522 0.12286 38.539 38.46 38.583 0.01704 8 5 2 0 0 0 0.21113 1 20511 20511 7.9454 4.0691 1 4282000 29341 8459 19487 19864 34563 34563 0.040971033973846716 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3207397460938 2 591.319306 1180.62406 0.55341 0.00032724 -0.40146 -0.00023739 0.15195 8.9851E-05 591.3190089669666 43.202 0.3891 38.438 38.288 38.677 -4.7648 37 27 2 0 0 0 0.036608 1 26192 26192 55.235 19.108 1 20479000 29342 8459 19487 19864 34564 34564 0.040971033973846716 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5476989746094 3 394.548629 1180.62406 0.89494 0.0003531 -1.1614 -0.00045822 -0.26644 -0.00010512 394.54790936903623 43.209 0.31905 38.444 38.288 38.607 -4.7648 29 22 2 0 0 0 0.094905 1 26196 26196 34.222 23.323 1 20271000 29343 8459 19487 19864 34565 34565 0.040971033973846716 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MSMS AL20221201_MKP_PDAC_01 4 394.5491027832031 3 394.548629 1180.62406 NaN NaN NaN NaN NaN NaN NaN 43.361 1 38.596 38.096 39.096 -4.7648 0 0 0 0.28373 1 26329 26329 25.997 8.5548 1 29344 8459 19487 19864 34566 34566 0.040971033973846716 KYITEVSRW 9 Unmodified _KYITEVSRW_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 591.319306 1180.62406 -0.0016685 -9.8663E-07 1.9181 0.0011342 1.9164 0.0011332 591.3209652956272 38.966 0.26722 38.679 38.52 38.787 -0.28687 0.12069 0.0024998 NaN 55.235 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1975100 29345 8459 19487 19864 0.040971033973846716 KYITEVSRWE 10 Unmodified _KYITEVSRWE_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MSMS AL20221201_MKP_PDAC_01 4 437.8987121582031 3 437.562827 1309.66665 NaN NaN NaN NaN NaN NaN NaN 69.56 1 63.385 62.885 63.885 -6.1757 0 0 0 0.68942 1 45432 45432 10.899 0 1 29346 8459 19488 19865 34567 34567 0.024204537349532984 KYITKSFNF 9 Unmodified _KYITKSFNF_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2103881835938 3 383.209725 1146.60735 0.21362 8.1861E-05 0.40502 0.00015521 0.61864 0.00023707 383.20982131225094 42.352 0.2591 42.343 42.208 42.467 -0.0088196 27 11 3 0 0 0 0.2143 1 22649 22649 20.415 13.377 1 18408000 29347 5265 19489 19866 34568 34568 0.03990602511407815 KYITKSFNF 9 Unmodified _KYITKSFNF_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3121948242188 2 574.310949 1146.60735 0.48657 0.00027944 -0.18751 -0.00010769 0.29906 0.00017175 574.3106052851045 46.527 0.21392 41.446 41.331 41.545 -5.0805 69 33 3 0 0 0 0.018061 1 28703 28703 65.474 25.524 1 100760000 29348 5265 19489 19866 34569 34569 0.03990602511407815 KYITKSFNF 9 Unmodified _KYITKSFNF_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5450439453125 3 383.209725 1146.60735 0.84549 0.000324 -0.10893 -4.1741E-05 0.73656 0.00028226 383.2096041960122 46.544 0.23551 41.464 41.317 41.553 -5.0805 50 36 2 0 0 0 0.20428 1 28736 28736 16.566 6.8016 1 54177000 29349 5265 19489 19866 34570 34570 0.03990602511407815 KYITKSFNFY 10 Unmodified _KYITKSFNFY_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5642700195312 3 437.564168 1309.67067 1.2915 0.0005651 -1.1802 -0.00051641 0.11128 4.8693E-05 437.5635977167435 47.053 0.44962 47.02 46.814 47.263 -0.033417 49 21 3 0 0 0 0.49559 1 25308 25308 16.566 16.566 1 56566000 29350 5265 19490 19867 34571 34571 0.028225432286490104 KYITKSFNFY 10 Unmodified _KYITKSFNFY_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.8436279296875 2 655.842613 1309.67067 1.4416 0.00094548 -1.0423 -0.00068361 0.3993 0.00026187 655.8413854500495 47.047 0.246 47.013 46.877 47.123 -0.033421 26 12 3 0 0 0 0.060668 1 25312 25312 71.708 34.633 1 14622000 29351 5265 19490 19867 34572 34572 0.028225432286490104 KYITKSFNFY 10 Unmodified _KYITKSFNFY_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5639953613281 3 437.564168 1309.67067 0.71736 0.00031389 0.29887 0.00013078 1.0162 0.00044467 437.5642526562492 52.193 0.34795 46.459 46.304 46.652 -5.7345 31 21 2 0 0 0 0.11322 2 33019 32885;33019 44.392 26.019 1 61124000 29352 5265 19490 19867 34573;34574 34574 0.028225432286490104 KYITKSFNFY 10 Unmodified _KYITKSFNFY_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.842529296875 2 655.842613 1309.67067 0.44318 0.00029066 -0.86064 -0.00056444 -0.41745 -0.00027378 656.3434681032576 52.231 0.27921 46.497 46.319 46.598 -5.7345 32 17 3 0 0 0 0.0021904 1 32915 32915 121.5 57.543 1 56846000 29353 5265 19490 19867 34575 34575 0.028225432286490104 KYITTTLFL 9 Unmodified _KYITTTLFL_ 0 0 0 nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3250732421875 2 550.323525 1098.6325 0.20592 0.00011332 0.85351 0.00046971 1.0594 0.00058303 550.3241409153468 73.214 0.34001 73.256 73.108 73.448 0.041733 42 15 3 0 0 0 0.033747 2 40410 40299;40410 66.457 37.97 1 29131000 29354 1500 19491 19868 34576;34577 34577 0.08712657313981254 KYITTTLFL 9 Unmodified _KYITTTLFL_ 0 0 0 nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3237915039062 2 550.323525 1098.6325 1.2603 0.0006936 0.19042 0.00010479 1.4508 0.00079839 550.3236254171609 95.908 0.35645 89.733 89.569 89.925 -6.1757 63 21 4 0 0 0 0.030212 2 63467 63467;63592 69.105 31.587 1 185760000 29355 1500 19491 19868 34578;34579 34578 0.08712657313981254 KYIYFYQRYLI 11 Unmodified _KYIYFYQRYLI_ 0 0 0 ENST00000502773.5_1_4:157683422-157683533:-|nuORF ENST00000502773.5_1_4:157683422-157683533:-|nuORF ENST00000502773.5_1_4:157683422-157683533:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 785.4264526367188 2 785.426845 1568.83914 NaN NaN NaN NaN NaN NaN NaN 87.196 1 86.692 86.192 87.192 -0.50423 0 0 0 0.9435 1 47701 47701 0 0 1 29356 14459 19492 19869 34580 34580 0.07747025142316488 KYIYKSPEL 9 Unmodified _KYIYKSPEL_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8193359375 2 570.818607 1139.62266 -0.092317 -5.2696E-05 1.5653 0.0008935 1.473 0.00084081 570.8196588933707 33.603 0.30769 33.444 33.223 33.531 -0.15918 27 12 3 0 0 0 0.26811 1 17492 17492 19.362 10.617 1 1288700 29357 1901 19493 19870 34581 34581 0.058434693086155676 KYIYKSPEL 9 Unmodified _KYIYKSPEL_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8828735351562 3 380.881497 1139.62266 -0.24905 -9.486E-05 1.3422 0.00051122 1.0931 0.00041636 380.8821042156542 33.613 0.33001 33.454 33.223 33.553 -0.15918 32 13 3 0 0 0 0.37578 1 17496 17496 13.615 6.0059 1 2342400 29358 1901 19493 19870 34582 34582 0.058434693086155676 KYIYKSPEL 9 Unmodified _KYIYKSPEL_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 570.818607 1139.62266 -0.15441 -8.8139E-05 -0.84016 -0.00047958 -0.99457 -0.00056772 570.8180594878181 33.409 0.19067 33.409 33.243 33.434 0 -0.017537 -0.0024441 NaN 19.362 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2200400 29359 1901 19493 19870 0.058434693086155676 KYIYQTLFL 9 Unmodified _KYIYQTLFL_ 0 0 0 ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF;ENSG00000244234|ENST00000463439|GMCL2 ENSG00000087338|ENST00000282570|GMCL1 ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8375854492188 2 594.8368 1187.65905 -0.045328 -2.6963E-05 0.79783 0.00047458 0.7525 0.00044761 594.8371557910339 80.022 0.19117 80.079 79.932 80.123 0.057587 17 7 3 0 0 0 0.028475 1 44207 44207 56.177 27.095 1 5686700 29360 1468 19494 19871 34583 34583 0.07272346205309077 KYKAPGEEFF 10 Unmodified _KYKAPGEEFF_ 0 0 0 ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3057861328125 2 608.305864 1214.59717 1.4246 0.0008666 1.2737 0.00077483 2.6984 0.0016414 608.3052530238087 47.677 0.38068 42.443 42.184 42.565 -5.2339 38 22 2 0 0 0 0.021614 1 29545 29545 74.2 34.25 1 14578000 29361 6781 19495 19872 34584 34584 -0.0015400521383526211 KYKAPGEEFF 10 Unmodified _KYKAPGEEFF_ 0 0 0 ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.872802734375 3 405.873001 1214.59717 1.7372 0.00070509 -0.37686 -0.00015296 1.3604 0.00055213 405.8729870245478 47.655 0.49573 42.421 42.104 42.599 -5.2339 43 28 2 0 0 0 0.57893 1 29576 29576 7.4771 5.2243 1 13968000 29362 6781 19495 19872 34585 34585 -0.0015400521383526211 KYKDAANLL 9 Unmodified _KYKDAANLL_ 0 0 0 nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1 nc|ENSG00000126214|Q07866-8|KLC1 nc|ENSG00000126214|Q07866-8|KLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2960815429688 2 518.295299 1034.57605 -0.16566 -8.5858E-05 -0.74755 -0.00038745 -0.91321 -0.00047331 518.2943760201941 32.236 0.36993 32.107 31.961 32.33 -0.12915 29 14 3 0 0 0 0.025842 1 16768 16768 57.722 3.8892 1 6420000 29363 3929 19496 19873 34586 34586 0.06014029477319127 KYKDAANLL 9 Unmodified _KYKDAANLL_ 0 0 0 nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1 nc|ENSG00000126214|Q07866-8|KLC1 nc|ENSG00000126214|Q07866-8|KLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2974853515625 2 518.295299 1034.57605 1.2521 0.00064896 -0.19415 -0.00010063 1.0579 0.00054833 518.2951815339154 35.774 0.58022 31.581 31.318 31.899 -4.1928 119 36 4 0 0 0 0.0086722 3 20676 20676;20805;20942 88.954 20.873 1 366480000 29364 3929 19496 19873 34587;34588;34589 34587 0.06014029477319127 KYKDDDDDQLF 11 Unmodified _KYKDDDDDQLF_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF;PLOD3|p.Q293Gfs*66|1|0.06|ENSG00000106397|chr7:101212844-101212845|-/CC|frameshift_variant ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.8763122558594 3 467.87714 1400.60959 -0.0096495 -4.5148E-06 -0.72965 -0.00034139 -0.7393 -0.0003459 468.2110600358609 35.217 0.25229 35.217 35.09 35.342 0 21 12 2 0 0 0 0.60536 1 18628 18628 11.065 6.6591 1 3681700 29365 2424 19497 19874 34590 34590 -0.07469058332117129 KYKDHFFAF 9 Unmodified _KYKDHFFAF_ 0 0 0 nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5377807617188 3 401.537953 1201.59203 0.46742 0.00018769 0.70851 0.00028449 1.1759 0.00047218 401.5380996050973 47.499 0.24141 47.461 47.319 47.561 -0.038647 18 10 2 0 0 0 0.43463 1 25591 25591 15.248 8.1468 1 3230000 29366 9963 19498 19875 34591 34591 -0.0007026428577319166 KYKDIQDKL 9 Unmodified _KYKDIQDKL_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.2206115722656 3 384.220401 1149.63937 -0.41123 -0.000158 0.49424 0.0001899 0.083007 3.1893E-05 384.2204367085702 21.539 0.23227 21.539 21.428 21.66 0 70 31 3 0 0 0 0.069655 1 10879 10879 37.771 24.899 1 4198500 29367 6943 19499 19876 34592 34592 0.07053970194556314 KYKDIQDKL 9 Unmodified _KYKDIQDKL_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2205200195312 3 384.220401 1149.63937 0.65929 0.00025331 0.62233 0.00023911 1.2816 0.00049242 384.2205193566645 24.19 0.38473 21.363 21.196 21.581 -2.8273 61 21 4 0 0 0 0.01958 2 13236 13121;13236 59.052 30.558 1 49588000 29368 6943 19499 19876 34593;34594 34594 0.07053970194556314 KYKDIQDKL 9 Unmodified _KYKDIQDKL_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.826416015625 2 575.826963 1149.63937 0.29703 0.00017104 0.27972 0.00016107 0.57675 0.00033211 575.8269697112013 24.17 0.19761 21.343 21.231 21.428 -2.8273 15 10 2 0 0 0 0.011211 1 13150 13150 77.049 35.093 1 3873300 29369 6943 19499 19876 34595 34595 0.07053970194556314 KYKDKKWYQF 10 Unmodified _KYKDKKWYQF_ 0 0 0 nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5;ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L nc|ENSG00000164506|Q5T5C0-3|STXBP5;ENSG00000145087|ENST00000471454|STXBP5L nc|ENSG00000164506|Q5T5C0-3|STXBP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7560119628906 3 478.590717 1432.75032 NaN NaN NaN NaN NaN NaN NaN 33.541 1 33.57 33.07 34.07 0.028934 0 0 0 0.98914 1 17651 17651 0.77653 0.27058 1 29370 7201;5665 19500 19877 34596 34596 0.05125609902643191 KYKDNEAIEF 10 Unmodified _KYKDNEAIEF_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.542724609375 3 419.543432 1255.60847 -0.58943 -0.00024729 -0.47266 -0.0001983 -1.0621 -0.00044559 419.54324991118006 35.002 0.21013 35.002 34.9 35.11 0 24 10 3 0 0 0 0.65891 1 18480 18480 7.4771 3.89 1 4903600 29371 824 19501 19878 34597 34597 -0.009112279103419496 KYKDNEAIEF 10 Unmodified _KYKDNEAIEF_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.8115234375 2 628.81151 1255.60847 -0.4154 -0.00026121 0.29775 0.00018723 -0.11765 -7.3977E-05 628.811489575776 34.997 0.15257 34.997 34.919 35.072 0 13 7 3 0 0 0 0.54083 1 18513 18513 16.149 3.1066 1 2558300 29372 824 19501 19878 34598 34598 -0.009112279103419496 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2094116210938 3 358.209836 1071.60768 -0.31136 -0.00011153 0.39244 0.00014058 0.081085 2.9045E-05 358.209937945188 22.914 0.35282 22.914 22.754 23.107 0 61 19 4 0 0 0 0.018301 2 11620 11620;11718 51.415 29.669 1 36691000 29373 4907 19502 19879 34599;34600 34599 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.2092895507812 3 358.209836 1071.60768 -0.089817 -3.2173E-05 -0.5094 -0.00018247 -0.59921 -0.00021464 358.20966125787345 22.927 0.20073 22.939 22.831 23.032 0.012394 22 10 3 0 0 0 0.018301 1 11655 11655 59.368 33.969 1 6604100 29374 4907 19502 19879 34601 34601 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2096252441406 3 358.209836 1071.60768 NaN NaN NaN NaN NaN NaN NaN 22.763 1 22.78 22.28 23.28 0.01749 0 0 0 0.080768 1 11702 11702 43.772 21.036 1 29375 4907 19502 19879 34602 34602 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2107849121094 3 358.209836 1071.60768 NaN NaN NaN NaN NaN NaN NaN 39.351 1 39.363 38.863 39.863 0.011452 0 0 0 0.82739 1 20956 20956 2.4985 0.59211 1 29376 4907 19502 19879 34603 34603 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2098693847656 3 358.209836 1071.60768 0.51881 0.00018584 0.46987 0.00016831 0.98868 0.00035415 358.2098394250403 25.622 0.46101 22.738 22.463 22.924 -2.8838 112 25 6 0 0 0 0.026094 3 14031 13923;14031;14142 60.074 34.134 1 388160000 29377 4907 19502 19879 34604;34605;34606 34605 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8110961914062 2 536.811116 1071.60768 -0.25654 -0.00013772 0.42196 0.00022651 0.16541 8.8796E-05 536.8113746208793 25.592 0.39502 22.709 22.514 22.909 -2.8831 59 21 4 0 0 0 0.008513 2 14054 13939;14054 99.755 61.781 1 23919000 29378 4907 19502 19879 34607;34608 34608 0.07474022231258459 KYKEAAHLL 9 Unmodified _KYKEAAHLL_ 0 0 0 nc|ENSG00000137171|Q9NSK0-4|KLC4;ENST00000467906.5_1_6:43030654-43039600:+|nuORF;nc|ENSG00000137171|Q9NSK0-5|KLC4;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000137171|ENST00000347162|KLC4;ENSG00000174996|ENST00000394067|KLC2;nc|ENSG00000137171|Q9NSK0-3|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 nc|ENSG00000137171|Q9NSK0-4|KLC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.811116 1071.60768 -0.13064 -7.0128E-05 -0.45568 -0.00024462 -0.58632 -0.00031474 536.8108377827662 22.904 0.14793 22.904 22.847 22.995 0 0.09735 -0.00061664 NaN 99.755 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1229200 29379 4907 19502 19879 0.07474022231258459 KYKEATDLL 9 Unmodified _KYKEATDLL_ 0 0 0 nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.8693237304688 3 360.869368 1079.58628 -0.60341 -0.00021775 1.0808 0.00039003 0.47738 0.00017227 360.8696207094751 34.466 0.26883 34.466 34.345 34.614 0 31 13 3 0 0 0 0.07087 1 18158 18158 30.703 18.529 1 4068500 29380 2255 19503 19880 34609 34609 0.04966592411892634 KYKEATDLL 9 Unmodified _KYKEATDLL_ 0 0 0 nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 nc|ENSG00000104892|Q6P597-2|KLC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.8004150390625 2 540.800414 1079.58628 -0.45256 -0.00024475 0.54908 0.00029694 0.09652 5.2198E-05 540.8005844092935 34.469 0.23151 34.469 34.365 34.597 0 27 11 3 0 0 0 0.029718 1 18166 18166 55.503 19.376 1 8696100 29381 2255 19503 19880 34610 34610 0.04966592411892634 KYKEDEPLF 9 Unmodified _KYKEDEPLF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2008361816406 3 390.201007 1167.58119 -0.0064648 -2.5226E-06 -0.040959 -1.5982E-05 -0.047424 -1.8505E-05 390.2009239952279 37.405 0.34753 37.405 37.238 37.586 0 61 18 4 0 0 0 0.024882 2 19849 19849;19975 53.404 16.329 1 56930000 29382 6368 19504 19881 34611;34612 34611 0.0041028854927844804 KYKEDEPLF 9 Unmodified _KYKEDEPLF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7982788085938 2 584.797872 1167.58119 0.068081 3.9814E-05 -0.29683 -0.00017359 -0.22875 -0.00013377 584.7976176535691 37.417 0.34937 37.417 37.219 37.569 0 54 18 4 0 0 0 0.0089732 2 19850 19850;19974 86.332 46.382 1 55899000 29383 6368 19504 19881 34613;34614 34613 0.0041028854927844804 KYKEDEPLF 9 Unmodified _KYKEDEPLF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7991333007812 2 584.797872 1167.58119 1.1205 0.00065525 0.35327 0.00020659 1.4737 0.00086184 584.7981205272988 41.032 0.60231 36.424 36.084 36.686 -4.6079 85 36 3 0 0 0 0.0082548 2 24452 24452;24588 96.367 52.594 1 57624000 29384 6368 19504 19881 34615;34616 34615 0.0041028854927844804 KYKEDEPLF 9 Unmodified _KYKEDEPLF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2010192871094 3 390.201007 1167.58119 1.4787 0.00057698 -0.28026 -0.00010936 1.1984 0.00046762 390.20086024723145 41.022 0.52117 36.414 36.134 36.655 -4.6079 99 32 4 0 0 0 0.07916 2 24459 24459;24599 34.932 4.2286 1 51247000 29385 6368 19504 19881 34617;34618 34617 0.0041028854927844804 KYKEDEPLF 9 Unmodified _KYKEDEPLF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 584.797872 1167.58119 0.20197 0.00011811 2.4286 0.0014202 2.6306 0.0015384 584.7966239619722 37.342 0.069134 37.364 37.306 37.375 0.021545 -0.02661 0.0031678 NaN 86.332 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 537800 29386 6368 19504 19881 0.0041028854927844804 KYKELGEKL 9 Unmodified _KYKELGEKL_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.884765625 3 369.88513 1106.63356 -0.4227 -0.00015635 0.28556 0.00010562 -0.13714 -5.0726E-05 369.885173356825 20.763 0.12219 20.763 20.698 20.82 0 14 8 2 0 0 0 0.55886 1 10468 10468 3.8763 1.1411 1 1211000 29387 7562 19505 19882 34619 34619 0.08450871682885008 KYKERGTVL 9 Unmodified _KYKERGTVL_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3219604492188 2 547.321848 1092.62914 0.2652 0.00014515 -0.39044 -0.00021369 -0.12523 -6.8543E-05 547.3217212201781 17.135 0.14409 14.548 14.472 14.616 -2.5866 48 26 2 0 0 0 0.14594 1 8903 8903 28.495 6.9575 1 4179300 29388 6636 19506 19883 34620 34620 0.08653407259998858 KYKGIFNGF 9 Unmodified _KYKGIFNGF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.531005859375 3 358.530798 1072.57057 0.93002 0.00033344 0.2067 7.411E-05 1.1367 0.00040755 358.5308578831359 49.749 0.37592 49.7 49.531 49.907 -0.048828 64 18 5 0 0 0 0.16226 2 26851 26851;26959 19.362 12.26 1 47690000 29389 1156 19507 19884 34621;34622 34621 0.0371835068551718 KYKGIFNGF 9 Unmodified _KYKGIFNGF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.29150390625 2 537.292559 1072.57057 1.0259 0.00055121 1.0595 0.00056927 2.0854 0.0011205 537.2930154675505 49.741 0.43829 49.692 49.568 50.006 -0.048824 56 21 5 0 0 0 0.010818 2 26867 26867;26972 78.149 51.266 1 41719000 29390 1156 19507 19884 34623;34624 34623 0.0371835068551718 KYKGIFNGF 9 Unmodified _KYKGIFNGF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5312194824219 3 358.530798 1072.57057 1.8719 0.00067112 -0.13424 -4.8131E-05 1.7376 0.00062299 358.5307142118951 54.325 0.41627 48.459 48.266 48.682 -5.8653 61 25 3 0 0 0 0.052168 2 34499 34351;34499 32.786 21.962 1 52276000 29391 1156 19507 19884 34625;34626 34626 0.0371835068551718 KYKGIFNGF 9 Unmodified _KYKGIFNGF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2931518554688 2 537.292559 1072.57057 1.0999 0.00059098 -1.5777 -0.0008477 -0.4778 -0.00025672 537.2912168069279 54.35 0.57315 48.485 48.083 48.656 -5.8653 82 33 3 0 0 0 0.07916 1 34369 34369 37.974 21.032 1 92358000 29392 1156 19507 19884 34627 34627 0.0371835068551718 KYKGIFNGF 9 Unmodified _KYKGIFNGF_ 0 0 0 ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF ENST00000551123.5_1_12:98989412-98995303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2926635742188 2 537.292559 1072.57057 0.63892 0.00034329 0.6884 0.00036987 1.3273 0.00071316 537.2926976039948 80.832 0.75484 74.657 74.258 75.013 -6.1757 109 41 4 0 0 0 0.00856 4 52974 52853;52974;53097;53237 100.37 66.269 1 62618000 29393 1156 19507 19884 34628;34629;34630;34631 34629 0.0371835068551718 KYKGIYHF 8 Unmodified _KYKGIYHF_ 0 0 0 REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5274963378906 3 352.527277 1054.56 NaN NaN NaN NaN NaN NaN NaN 49.697 1 49.648 49.148 50.148 -0.048824 0 0 0 0.97348 1 26862 26862 3.9444 0 1 + 29394 21694 19508 19885 34632 34632 0.034903680310890195 KYKGIYHF 8 Unmodified _KYKGIYHF_ 0 0 0 REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF REV__ENST00000483962.1_1_2:241990766-241991612:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.8556213378906 3 352.527277 1054.56 NaN NaN NaN NaN NaN NaN NaN 80.915 1 74.74 74.24 75.24 -6.1757 0 0 0 0.88073 1 53091 53091 14.838 9.9413 1 + 29395 21694 19508 19885 34633 34633 0.034903680310890195 KYKGLLRRLG 10 Unmodified _KYKGLLRRLG_ 0 0 0 REV__nc|ENSG00000151116|Q8IX04-7|UEVLD;REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF REV__nc|ENSG00000151116|Q8IX04-7|UEVLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8889770507812 2 602.387857 1202.76116 -0.72796 -0.00043851 0.18459 0.0001112 -0.54337 -0.00032732 602.8889300904307 103.42 0.18761 103.37 103.26 103.45 -0.04792 18 7 3 0 0 0 0.72247 1 57429 57429 0.40072 0 1 1443600 + 29396 21049;28525 19509 19886 34634 34634 0.16789057067603608 KYKGLLRRLG 10 Unmodified _KYKGLLRRLG_ 0 0 0 REV__nc|ENSG00000151116|Q8IX04-7|UEVLD;REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF REV__nc|ENSG00000151116|Q8IX04-7|UEVLD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 602.387857 1202.76116 -0.72796 -0.00043851 0.18459 0.0001112 -0.54337 -0.00032732 602.8889300904307 103.42 0.18761 103.37 103.26 103.45 -0.04792 0 0 NaN 0.40072 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1443600 + 29397 21049;28525 19509 19886 0.16789057067603608 KYKKTTPEYVF 11 Unmodified _KYKKTTPEYVF_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.9253234863281 3 468.590494 1402.74965 -0.14055 -6.5858E-05 0.57087 0.00026751 0.43033 0.00020165 468.9250395386137 30.33 0.17876 30.36 30.277 30.456 0.030104 11 7 2 0 0 0 0.71259 1 15887 15887 3.0723 1.8574 1 1111200 29398 1216 19510 19887 34635 34635 0.06438770462909815 KYKNSEINFSF 11 Unmodified _KYKNSEINFSF_ 0 0 0 ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.5667419433594 3 459.566348 1375.67722 0.43177 0.00019843 0.16358 7.5175E-05 0.59534 0.0002736 459.90054744447707 50.85 0.24021 50.437 50.298 50.538 -0.41351 20 11 2 0 0 0 0.65706 1 27396 27396 8.2864 2.0521 1 2354100 29399 7040 19511 19888 34636 34636 0.004404363893854679 KYKNSEINFSF 11 Unmodified _KYKNSEINFSF_ 0 0 0 ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.5670776367188 3 459.566348 1375.67722 1.2581 0.00057819 0.15712 7.2207E-05 1.4152 0.00065039 459.5661720340681 50.472 0.26427 50.423 50.271 50.535 -0.048824 28 12 3 0 0 0 0.70435 1 27292 27292 3.8459 0 1 2807400 29400 7040 19511 19888 34637 34637 0.004404363893854679 KYKNSEINFSF 11 Unmodified _KYKNSEINFSF_ 0 0 0 ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K ENSG00000163644|ENST00000608933|PPM1K MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.5665893554688 3 459.566348 1375.67722 1.1705 0.0005379 0.23224 0.00010673 1.4027 0.00064463 459.56642647545544 55.195 0.25047 49.274 49.157 49.407 -5.9211 27 15 2 0 0 0 0.44612 1 35108 35108 19.144 6.288 1 16725000 29401 7040 19511 19888 34638 34638 0.004404363893854679 KYKPESEEL 9 Unmodified _KYKPESEEL_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2891235351562 2 561.787504 1121.56045 -0.18872 -0.00010602 0.55613 0.00031243 0.36741 0.0002064 561.7878659264658 19.805 0.15019 19.805 19.738 19.888 0 27 12 3 0 0 0 0.21473 1 9902 9902 4.3292 2.2695 1 2079200 29402 9390 19512 19889 34639 34639 0.0045369816962193 KYKPVCNQV 9 Carbamidomethyl (C) _KYKPVC(Carbamidomethyl (C))NQV_ KYKPVC(1)NQV KYKPVC(82)NQV 0 1 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3007202148438 2 568.300059 1134.58556 0.8022 0.00045589 0.33282 0.00018914 1.135 0.00064503 568.3001897362393 18.296 0.20682 15.675 15.548 15.755 -2.6215 28 14 3 0 0 0 0.009483 1 9598 9598 81.89 57.87 1 3024500 29403 9767;6130;10113 19513 19890 34640 34640 612 0.023654744911937087 KYKTGNHV 8 Unmodified _KYKTGNHV_ 0 0 0 REV__nc|ENSG00000105889|Q6NZ63|STEAP1B REV__nc|ENSG00000105889|Q6NZ63|STEAP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7590942382812 2 473.758884 945.503215 0.11397 5.3997E-05 -0.14826 -7.0241E-05 -0.034289 -1.6245E-05 473.75878973446163 23.179 0.47722 20.4 20.166 20.644 -2.7784 103 39 3 0 0 0 0.50673 1 12434 12434 34.102 10.954 1 75811000 + 29404 18471 19514 19891 34641 34641 0.02828320474566226 KYKVINKDQW 10 Unmodified _KYKVINKDQW_ 0 0 0 nc|ENSG00000109184|Q92564-2|DCUN1D4;ENSG00000109184|ENST00000334635|DCUN1D4;nc|ENSG00000109184|Q92564-3|DCUN1D4;ENST00000477560.5_1_4:52775105-52779747:+|nuORF;ENST00000508257.5_1_4:52775567-52779747:+|nuORF nc|ENSG00000109184|Q92564-2|DCUN1D4 nc|ENSG00000109184|Q92564-2|DCUN1D4 MSMS AL20221201_MKP_PDAC_01 4 441.2472839355469 3 441.24695 1320.71902 NaN NaN NaN NaN NaN NaN NaN 28.081 1 24.933 24.433 25.433 -3.1482 0 0 0 0.70869 1 15625 15625 16.275 9.6511 1 29405 2639 19515 19892 34642 34642 0.07149036868554504 KYKVVELFF 9 Unmodified _KYKVVELFF_ 0 0 0 ENSG00000108960|ENST00000262065|MMD ENSG00000108960|ENST00000262065|MMD ENSG00000108960|ENST00000262065|MMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5622253417969 3 391.561987 1171.66413 0.44654 0.00017485 0.022144 8.6707E-06 0.46869 0.00018352 391.56249624144544 69.049 0.27898 69.08 68.97 69.249 0.030914 29 13 3 0 0 0 0.5209 1 37965 37965 6.1918 3.6934 1 2269300 29406 2622 19516 19893 34643 34643 0.08516650067917908 KYKYIQTLR 9 Unmodified _KYKYIQTLR_ 0 0 0 ENST00000473553.5_1_7:121738626-121741683:-|nuORF;ENSG00000008311|ENST00000417368|AASS ENST00000473553.5_1_7:121738626-121741683:-|nuORF ENST00000473553.5_1_7:121738626-121741683:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.9067687988281 3 404.908157 1211.70264 NaN NaN NaN NaN NaN NaN NaN 16.13 1 13.573 13.073 14.073 -2.557 0 0 0 0.41144 1 8335 8335 19.362 4.4048 1 29407 386 19517 19894 34644 34644 0.10525955702451029 KYLACCDCLI 10 Unmodified _KYLACCDCLI_ 0 0 0 ENST00000565698.5_2_16:28192347-28222689:-|nuORF ENST00000565698.5_2_16:28192347-28222689:-|nuORF ENST00000565698.5_2_16:28192347-28222689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1785888671875 3 382.178163 1143.51266 0.85465 0.00032663 1.2389 0.00047349 2.0936 0.00080012 382.17849772867834 27.896 0.45391 24.748 24.568 25.022 -3.1482 79 24 4 0 0 0 0.66652 1 15453 15453 6.6304 2.686 1 65804000 29408 15409 19518 19895 34645 34645 -0.053357386181005495 KYLADPSNLF 10 Unmodified _KYLADPSNLF_ 0 0 0 ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1;nc|ENSG00000162959|Q9Y316-2|MEMO1;ENST00000422936.5_1_2:32094983-32168444:-|nuORF ENSG00000162959|ENST00000404530|MEMO1 ENSG00000162959|ENST00000404530|MEMO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3021850585938 2 584.305864 1166.59717 NaN NaN NaN NaN NaN NaN NaN 63.354 1 62.868 62.368 63.368 -0.48617 0 0 0 0.69089 1 34549 34549 24.991 8.0487 1 29409 6933 19519 19896 34646 34646 0.02053994786160729 KYLAGLRRL 9 Unmodified _KYLAGLRRL_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MSMS AL20221201_MKP_PDAC_01 4 363.9023132324219 3 363.901226 1088.68185 NaN NaN NaN NaN NaN NaN NaN 33.831 1 29.846 29.346 30.346 -3.9853 0 0 0 0.75456 1 19437 19437 7.609 1.4032 1 29410 1652 19520 19897 34647 34647 0.14105410113461403 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2130432128906 3 372.213358 1113.61824 0.13649 5.0803E-05 -0.30591 -0.00011386 -0.16942 -6.3059E-05 372.2132151148472 39.444 0.29311 39.444 39.282 39.575 0 34 13 3 0 0 0 0.23158 1 21099 21099 14.405 0.79051 1 21377000 29411 6888 19521 19898 34648 34648 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.8163452148438 2 557.816399 1113.61824 0.49155 0.00027419 -0.73725 -0.00041125 -0.2457 -0.00013706 557.8159822684165 39.437 0.27148 39.437 39.282 39.553 0 34 12 4 0 0 0 0.0074582 1 21100 21100 110.55 55.779 1 21064000 29412 6888 19521 19898 34649 34649 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.81640625 2 557.816399 1113.61824 0.1844 0.00010286 -0.14238 -7.9424E-05 0.042016 2.3437E-05 557.816286099366 39.738 0.30528 39.441 39.264 39.569 -0.29716 41 14 4 0 0 0 0.008513 1 20943 20943 99.755 57.916 1 16824000 29413 6888 19521 19898 34650 34650 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2136840820312 3 372.213358 1113.61824 NaN NaN NaN NaN NaN NaN NaN 39.685 1 39.388 38.888 39.888 -0.29716 0 0 0 0.08978 1 20944 20944 34.932 16.559 1 29414 6888 19521 19898 34651 34651 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8170166015625 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 39.372 1 39.383 38.883 39.883 0.011452 0 0 0 0.00038198 1 20967 20967 137.42 65.502 1 29415 6888 19521 19898 34652 34652 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8164672851562 2 557.816399 1113.61824 0.74319 0.00041457 -0.15466 -8.6273E-05 0.58853 0.00032829 557.8163829436414 44.626 0.47086 39.774 39.504 39.975 -4.852 98 37 3 0 0 0 2.2236E-06 2 27270 27151;27270 157.8 85.873 1 86061000 29416 6888 19521 19898 34653;34654 34654 0.06598004885699993 KYLAHLEQL 9 Unmodified _KYLAHLEQL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 ENSG00000162645|ENST00000370466|GBP2 MSMS AL20221201_MKP_PDAC_01 4 557.817138671875 2 557.816399 1113.61824 NaN NaN NaN NaN NaN NaN NaN 44.814 1 39.962 39.462 40.462 -4.852 0 0 0 0.054801 1 27405 27405 55.503 11.73 1 29417 6888 19521 19898 34655 34655 0.06598004885699993 KYLAILGSVTF 11 Unmodified _KYLAILGSVTF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3558349609375 2 606.355357 1210.69616 NaN NaN NaN NaN NaN NaN NaN 84.027 1 84.09 83.59 84.59 0.063171 0 0 0 0.035798 1 46489 46489 71.708 20.293 1 29418 3388 19522 19899 34656 34656 0.09924017751086467 KYLAILGSVTF 11 Unmodified _KYLAILGSVTF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3555297851562 2 606.355357 1210.69616 0.20674 0.00012536 0.15583 9.4489E-05 0.36257 0.00021985 606.3554275765058 99.099 0.16621 92.923 92.824 92.99 -6.1757 29 9 4 0 0 0 0.018102 1 65878 65878 71.708 27.726 1 463520000 29419 3388 19522 19899 34657 34657 0.09924017751086467 KYLAKNSATLF 11 Unmodified _KYLAKNSATLF_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2392272949219 3 419.239684 1254.69722 0.17214 7.2169E-05 1.3772 0.00057737 1.5493 0.00064954 419.2400600208669 39.128 0.28014 39.139 39.001 39.281 0.011452 29 12 3 0 0 0 0.60536 1 20814 20814 11.065 6.3494 1 3538700 29420 9411 19523 19900 34658 34658 0.08006232119987544 KYLAKNSATLF 11 Unmodified _KYLAKNSATLF_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3567504882812 2 628.355888 1254.69722 0.35238 0.00022142 1.1852 0.0007447 1.5375 0.00096612 628.3566971238549 39.125 0.21663 39.137 39.042 39.259 0.011456 19 9 3 0 0 0 0.46197 1 20831 20831 28.495 20.886 1 1357100 29421 9411 19523 19900 34659 34659 0.08006232119987544 KYLAKNSATLF 11 Unmodified _KYLAKNSATLF_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2409973144531 3 419.239684 1254.69722 0.92276 0.00038686 0.53375 0.00022377 1.4565 0.00061063 419.2399909354496 43.813 0.40508 39.048 38.843 39.248 -4.7648 40 25 2 0 0 0 0.3535 2 26743 26600;26743 23.964 13.165 1 13754000 29422 9411 19523 19900 34660;34661 34661 0.08006232119987544 KYLAKNSATLF 11 Unmodified _KYLAKNSATLF_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8577270507812 2 628.355888 1254.69722 0.43251 0.00027177 0.53283 0.00033481 0.96534 0.00060658 628.8577404257329 43.83 0.26536 39.065 38.888 39.153 -4.7648 27 16 2 0 0 0 2.8549E-06 1 26641 26641 128.58 51.754 1 7822600 29423 9411 19523 19900 34662 34662 0.08006232119987544 KYLAKVLWL 9 Unmodified _KYLAKVLWL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5746154785156 3 378.574227 1132.70085 1.9344 0.00073231 0.4548 0.00017218 2.3892 0.00090448 378.57442829241296 97.329 0.23294 91.153 91.062 91.295 -6.1757 20 12 2 0 0 0 0.13231 1 64506 64506 29.841 21.396 1 11663000 29424 9805 19524 19901 34663 34663 0.13980946684523587 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.30615234375 2 526.305332 1050.59611 0.068877 3.625E-05 -0.46279 -0.00024357 -0.39391 -0.00020732 526.3049754599224 56.25 0.3539 56.25 56.071 56.424 0 45 16 3 0 0 0 0.030212 2 31226 31226;31332 69.105 22.1 1 28921000 29425 6861 19525 19902 34664;34665 34664 0.07283780417287744 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.3033447265625 2 526.305332 1050.59611 -0.52882 -0.00027832 0.017572 9.248E-06 -0.51125 -0.00026907 526.3053390769043 56.661 0.26859 56.175 56.061 56.329 -0.48554 40 15 3 0 0 0 0.030212 2 30733 30733;30839 69.105 17.475 1 27779000 29426 6861 19525 19902 34666;34667 34666 0.07283780417287744 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3050537109375 2 526.305332 1050.59611 -0.17215 -9.0604E-05 -0.10165 -5.35E-05 -0.2738 -0.0001441 526.3052297137564 56.345 0.18647 56.276 56.194 56.38 -0.068737 16 9 2 0 0 0 0.044042 1 30640 30640 60.074 16.216 1 5140000 29427 6861 19525 19902 34668 34668 0.07283780417287744 KYLATLETL 9 Unmodified _KYLATLETL_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.306884765625 2 526.305332 1050.59611 2.2036 0.0011597 1.0746 0.00056555 3.2781 0.0017253 526.3059311165883 62.657 0.5482 56.481 56.21 56.759 -6.1757 68 27 3 0 0 0 0.040733 1 40527 40527 62.573 7.7991 1 84373000 29428 6861 19525 19902 34669 34669 0.07283780417287744 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.5699462890625 3 470.569759 1408.68745 0.58389 0.00027476 -0.31048 -0.0001461 0.27341 0.00012866 470.56955445462887 53.002 0.54202 53.002 52.702 53.244 0 81 24 5 0 0 0 0.0078265 2 29386 29278;29386 70.496 46.531 1 105260000 29429 7813 19526 19903 34670;34671 34671 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.3526611328125 2 705.351 1408.68745 0.2033 0.0001434 0.031489 2.2211E-05 0.23479 0.00016561 705.3510467220216 52.994 0.37542 52.994 52.82 53.195 0 55 17 4 0 0 0 2.298E-28 2 29291 29291;29397 192.32 137.07 1 51941000 29430 7813 19526 19903 34672;34673 34672 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.9046630859375 3 470.569759 1408.68745 0.48563 0.00022852 0.025677 1.2083E-05 0.51131 0.00024061 470.56977895824565 53.538 0.37941 53.086 52.9 53.28 -0.45173 66 18 5 0 0 0 0.0078265 2 28919 28919;29021 70.496 46.531 1 55842000 29431 7813 19526 19903 34674;34675 34674 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.351806640625 2 705.351 1408.68745 0.35435 0.00024994 0.30349 0.00021407 0.65784 0.00046401 705.3514136095342 53.528 0.28019 53.077 52.943 53.223 -0.45173 40 13 4 0 0 0 6.8024E-11 1 28942 28942 143.21 91.725 1 15246000 29432 7813 19526 19903 34676 34676 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 705.3500366210938 2 705.351 1408.68745 0.27003 0.00019046 0.29119 0.00020539 0.56121 0.00039585 705.3514566071063 53.16 0.1537 53.097 53.024 53.177 -0.063423 14 7 2 0 0 0 0.14513 1 28841 28841 45.74 31.834 1 1852800 29433 7813 19526 19903 34677 34677 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.5701904296875 3 470.569759 1408.68745 0.028424 1.3376E-05 0.80383 0.00037826 0.83226 0.00039163 470.57013023978783 53.176 0.23836 53.113 52.981 53.219 -0.063423 31 11 4 0 0 0 0.028917 1 28844 28844 55.467 40.629 1 6586600 29434 7813 19526 19903 34678 34678 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.5701293945312 3 470.569759 1408.68745 0.82117 0.00038642 0.11701 5.506E-05 0.93818 0.00044148 470.56974033911615 59.445 0.53972 53.33 53.11 53.65 -6.1147 78 29 4 0 0 0 4.5211E-07 3 38078 38078;38212;38342 105.35 76.064 1 110330000 29435 7813 19526 19903 34679;34680;34681 34679 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 705.3497314453125 2 705.351 1408.68745 0.57056 0.00040245 0.025317 1.7858E-05 0.59588 0.0004203 705.3510950739051 59.502 0.45638 53.387 53.131 53.587 -6.1147 59 24 3 0 0 0 3.5484E-28 2 38102 38102;38240 192.32 129.09 1 94809000 29436 7813 19526 19903 34682;34683 34682 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20221201_MKP_PDAC_01 4 705.3519897460938 2 705.351 1408.68745 NaN NaN NaN NaN NaN NaN NaN 68.174 1 61.998 61.498 62.498 -6.1757 0 0 0 1.0771E-10 1 44477 44477 146.68 108.91 1 29437 7813 19526 19903 34684 34684 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20221201_MKP_PDAC_01 4 705.351318359375 2 705.351 1408.68745 NaN NaN NaN NaN NaN NaN NaN 68.44 1 62.264 61.764 62.764 -6.1757 0 0 0 1.1007E-12 1 44667 44667 139.78 107.74 1 29438 7813 19526 19903 34685 34685 -0.0005500067604771175 KYLDEDTIYHL 11 Unmodified _KYLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20221201_MKP_PDAC_01 4 705.35107421875 2 705.351 1408.68745 NaN NaN NaN NaN NaN NaN NaN 68.655 1 62.479 61.979 62.979 -6.1757 0 0 0 5.2517E-07 1 44821 44821 121.5 81.264 1 29439 7813 19526 19903 34686 34686 -0.0005500067604771175 KYLDEFLLNKI 11 Unmodified _KYLDEFLLNKI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.9346008300781 3 465.934261 1394.78095 0.57504 0.00026793 0.078149 3.6412E-05 0.65318 0.00030434 465.93430395485404 72.858 0.31078 72.382 72.273 72.583 -0.47588 29 13 3 0 0 0 0.29175 1 39871 39871 17.572 12.856 1 1383000 29440 1694 19527 19904 34687 34687 0.09935343497045324 KYLDEFLLNKI 11 Unmodified _KYLDEFLLNKI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.9345092773438 3 465.934261 1394.78095 0.084866 3.9542E-05 1.0179 0.00047427 1.1028 0.00051381 465.93471380010567 72.377 0.29294 72.419 72.278 72.571 0.041725 42 13 5 0 0 0 0.073778 1 39830 39830 31.462 24.838 1 8300200 29441 1694 19527 19904 34688 34688 0.09935343497045324 KYLDEFLLNKI 11 Unmodified _KYLDEFLLNKI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 698.3970947265625 2 698.397753 1394.78095 0.20448 0.00014281 0.99545 0.00069522 1.1999 0.00083802 698.3982505799514 72.365 0.23234 72.406 72.316 72.548 0.041725 27 10 3 0 0 0 3.1802E-09 1 39846 39846 115.82 80.889 1 4145700 29442 1694 19527 19904 34689 34689 0.09935343497045324 KYLDEFLLNKI 11 Unmodified _KYLDEFLLNKI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2687683105469 3 465.934261 1394.78095 1.1516 0.00053657 -0.0019326 -9.0047E-07 1.1497 0.00053567 465.9342741723293 96.077 0.24039 89.901 89.767 90.007 -6.1757 44 14 4 0 0 0 0.00098399 1 63607 63607 60.943 39.144 1 59215000 29443 1694 19527 19904 34690 34690 0.09935343497045324 KYLDEFLLNKI 11 Unmodified _KYLDEFLLNKI_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593533.1_1_19:17308986-17317625:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.3980102539062 2 698.397753 1394.78095 0.77013 0.00053786 -0.045173 -3.1549E-05 0.72496 0.00050631 698.3973426702815 96.063 0.20399 89.887 89.785 89.989 -6.1757 30 12 3 0 0 0 1.7609999999999998E-163 1 63623 63623 280.07 154.88 1 30490000 29444 1694 19527 19904 34691 34691 0.09935343497045324 KYLDELGFTVF 11 Unmodified _KYLDELGFTVF_ 0 0 0 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.3472900390625 2 666.347729 1330.6809 -0.024156 -1.6097E-05 -0.34638 -0.00023081 -0.37054 -0.00024691 666.3473464067564 87.74 0.21494 87.74 87.64 87.855 0 16 9 2 0 0 0 0.66968 1 48602 48602 7.1017 2.9122 1 512000 29445 1442 19528 19905 34692 34692 0.028791061632318815 KYLDELGFTVF 11 Unmodified _KYLDELGFTVF_ 0 0 0 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.34765625 2 666.347729 1330.6809 0.4729 0.00031512 -0.37601 -0.00025056 0.096886 6.456E-05 666.3473931424096 88.282 0.46258 87.778 87.561 88.024 -0.50423 69 20 5 0 0 0 0.038834 2 48318 48215;48318 53.317 34.944 1 15403000 29446 1442 19528 19905 34693;34694 34694 0.028791061632318815 KYLDELGFTVF 11 Unmodified _KYLDELGFTVF_ 0 0 0 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 666.34716796875 2 666.347729 1330.6809 0.2135 0.00014227 -0.41412 -0.00027595 -0.20062 -0.00013368 666.3473825356086 87.483 0.37708 87.536 87.419 87.796 0.053352 39 17 3 0 0 0 2.0147E-05 2 48622 48622;48730 93.938 65.451 1 54519000 29447 1442 19528 19905 34695;34696 34695 0.028791061632318815 KYLDELGFTVF 11 Unmodified _KYLDELGFTVF_ 0 0 0 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.34765625 2 666.347729 1330.6809 0.73199 0.00048776 -0.26247 -0.0001749 0.46951 0.00031286 666.3474916855267 99.398 0.19569 93.222 93.128 93.324 -6.1757 44 12 5 0 0 0 2.0147E-05 1 66140 66140 93.938 72.191 1 897680000 29448 1442 19528 19905 34697 34697 0.028791061632318815 KYLDGLDVCRF 11 Carbamidomethyl (C) _KYLDGLDVC(Carbamidomethyl (C))RF_ KYLDGLDVC(1)RF KYLDGLDVC(52)RF 0 1 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.5672302246094 3 462.567583 1384.68092 0.29704 0.0001374 0.23362 0.00010807 0.53066 0.00024547 462.5676703683908 77.205 1.0214 71.029 70.164 71.185 -6.1757 96 56 2 0 0 0 0.044017 3 50252 50131;50252;50489 52.193 41.128 1 53461000 29449 3128 19529 19906 34698;34699;34700 34699 326 0.003967828915619975 KYLDGLDVCRF 11 Carbamidomethyl (C) _KYLDGLDVC(Carbamidomethyl (C))RF_ KYLDGLDVC(1)RF KYLDGLDVC(52)RF 0 1 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.5680541992188 3 462.567583 1384.68092 0.69375 0.00032091 -0.12559 -5.8096E-05 0.56816 0.00026281 462.5677295857193 77.567 1.2019 71.391 70.68 71.882 -6.1757 147 68 3 0 0 0 0.044017 2 50846 50610;50846 52.193 36.654 1 51112000 29450 3128 19529 19906 34701;34702 34702 326 0.003967828915619975 KYLDGLDVCRF 11 Carbamidomethyl (C) _KYLDGLDVC(Carbamidomethyl (C))RF_ KYLDGLDVC(1)RF KYLDGLDVC(150)RF 0 1 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MSMS AL20221201_MKP_PDAC_01 4 693.347412109375 2 693.347737 1384.68092 NaN NaN NaN NaN NaN NaN NaN 77.462 1 71.286 70.786 71.786 -6.1757 0 0 0 7.815400000000001E-25 1 50669 50669 146.9 101.2 1 29451 3128 19529 19906 34703 34703 326 0.003967828915619975 KYLDGLDVCRF 11 Carbamidomethyl (C) _KYLDGLDVC(Carbamidomethyl (C))RF_ KYLDGLDVC(1)RF KYLDGLDVC(120)RF 0 1 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MSMS AL20221201_MKP_PDAC_01 4 693.3489379882812 2 693.347737 1384.68092 NaN NaN NaN NaN NaN NaN NaN 77.65 1 71.475 70.975 71.975 -6.1757 0 0 0 8.1276E-13 1 50798 50798 119.6 67.973 1 29452 3128 19529 19906 34704 34704 326 0.003967828915619975 KYLDGLDVCRF 11 Carbamidomethyl (C) _KYLDGLDVC(Carbamidomethyl (C))RF_ KYLDGLDVC(1)RF KYLDGLDVC(85)RF 0 1 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MSMS AL20221201_MKP_PDAC_01 4 693.3483276367188 2 693.347737 1384.68092 NaN NaN NaN NaN NaN NaN NaN 77.865 1 71.69 71.19 72.19 -6.1757 0 0 0 0.00047649 1 50946 50946 84.738 29.235 1 29453 3128 19529 19906 34705 34705 326 0.003967828915619975 KYLDIHERM 9 Unmodified _KYLDIHERM_ 0 0 0 ENSG00000134809|ENST00000257245|TIMM10 ENSG00000134809|ENST00000257245|TIMM10 ENSG00000134809|ENST00000257245|TIMM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2099914550781 3 402.209619 1203.60703 0.75427 0.00030337 0.15461 6.2186E-05 0.90888 0.00036556 402.21006857099326 33.121 0.3624 29.264 29.081 29.443 -3.8562 28 23 2 0 0 0 0.13639 2 18937 18937;19067 23.016 13.355 1 26579000 29454 4641 19530 19907 34706;34707 34706 0.013368595198926414 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ KYLDIPKM(1)L KYLDIPKM(57)L 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8230590820312 2 568.822835 1135.63112 0.43607 0.00024805 -0.55223 -0.00031412 -0.11616 -6.6075E-05 568.8224703772472 48.844 0.23545 48.472 48.322 48.558 -0.37172 39 12 4 0 0 0 0.026499 1 26186 26186 57.249 36.795 1 48054000 29455 4211;16049;10744 19531 19908 34708 34708 744 0.06872699953578376 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ KYLDIPKM(1)L KYLDIPKM(44)L 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5509643554688 3 379.550982 1135.63112 0.39164 0.00014865 0.17 6.4525E-05 0.56164 0.00021317 379.5510786744538 49.035 0.26273 48.663 48.558 48.82 -0.37172 37 12 4 0 0 0 0.053952 1 26305 26305 43.982 26.539 1 20780000 29456 4211;16049;10744 19531 19908 34709 34709 744 0.06872699953578376 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ KYLDIPKM(1)L KYLDIPKM(74)L 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8237915039062 2 568.822835 1135.63112 0.55262 0.00031434 0.10169 5.7845E-05 0.65431 0.00037219 568.8228596025857 49.051 0.26273 48.68 48.558 48.82 -0.37172 47 12 5 0 0 0 0.012228 1 26408 26408 74.2 34.25 1 38588000 29457 4211;16049;10744 19531 19908 34710 34710 744 0.06872699953578376 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ KYLDIPKM(1)L KYLDIPKM(87)L 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8223876953125 2 568.822835 1135.63112 0.43182 0.00024563 0.032882 1.8704E-05 0.4647 0.00026433 568.8228471572028 48.517 0.29075 48.474 48.3 48.591 -0.04369 47 14 5 0 0 0 0.0088668 1 26144 26144 87.258 39.51 1 34880000 29458 4211;16049;10744 19531 19908 34711 34711 744 0.06872699953578376 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ KYLDIPKM(1)L KYLDIPKM(74)L 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8233642578125 2 568.822835 1135.63112 0.38645 0.00021982 0.28118 0.00015994 0.66763 0.00037976 568.8227898469929 48.712 0.21792 48.668 48.573 48.791 -0.04369 36 10 4 0 0 0 0.012228 1 26254 26254 74.2 38.073 1 29023000 29459 4211;16049;10744 19531 19908 34712 34712 744 0.06872699953578376 KYLDIPKML 9 Oxidation (M) _KYLDIPKM(Oxidation (M))L_ 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 379.550982 1135.63112 -0.65193 -0.00024744 1.0934 0.00041499 0.44144 0.00016755 379.55132073296903 48.712 0.38179 48.712 48.47 48.852 0 0.024709 0.00087703 NaN 43.982 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1184300 29460 4211;16049;10744 19531 19908 744 0.06872699953578376 KYLDIPKML 9 Unmodified _KYLDIPKML_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8258056640625 2 560.825378 1119.6362 0.73625 0.00041291 -0.98322 -0.00055141 -0.24696 -0.0001385 560.8248185691654 60.275 0.29368 60.227 60.073 60.367 -0.047878 35 15 4 0 0 0 0.0082981 1 32847 32847 96.936 43.103 1 19012000 29461 4211;16049;10744 19531 19909 34713 34713 0.08117003816209944 KYLDIPKML 9 Unmodified _KYLDIPKML_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2195434570312 3 374.219344 1119.6362 1.6832 0.00062988 -0.60575 -0.00022668 1.0774 0.0004032 374.2191040432766 89.626 0.61208 83.451 83.127 83.739 -6.1757 95 33 4 0 0 0 0.015445 3 59037 59037;59167;59289 53.404 18.472 1 113500000 29462 4211;16049;10744 19531 19909 34714;34715;34716 34714 0.08117003816209944 KYLDIPKML 9 Unmodified _KYLDIPKML_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8259887695312 2 560.825378 1119.6362 1.3502 0.00075723 -0.28439 -0.00015949 1.0658 0.00059774 560.8252207136966 89.618 0.75222 83.443 83.096 83.848 -6.1757 136 41 4 0 0 0 0.0040067 3 59193 59069;59193;59314 121.35 45.585 1 237250000 29463 4211;16049;10744 19531 19909 34717;34718;34719 34718 0.08117003816209944 KYLDNPNAL 9 Unmodified _KYLDNPNAL_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2770385742188 2 524.277106 1046.53966 0.68205 0.00035758 -1.1105 -0.00058219 -0.42841 -0.00022461 524.2765328547932 36.158 0.45309 36.158 35.858 36.311 0 65 22 4 0 0 0 0.039985 2 19222 19119;19222 49.933 30.676 1 109460000 29464 9933 19532 19910 34720;34721 34721 0.01825152580613576 KYLDNPNAL 9 Unmodified _KYLDNPNAL_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2778930664062 2 524.277106 1046.53966 1.0233 0.00053651 2.2378 0.0011732 3.2611 0.0017097 524.2782449974432 41.612 0.6534 37.004 36.624 37.277 -4.6079 126 42 4 0 0 0 0.0074135 2 25090 24961;25090 110.67 51.996 1 166820000 29465 9933 19532 19910 34722;34723 34723 0.01825152580613576 KYLDTGGDVF 10 Unmodified _KYLDTGGDVF_ 0 0 0 ENSG00000101052|ENST00000373030|IFT52 ENSG00000101052|ENST00000373030|IFT52 ENSG00000101052|ENST00000373030|IFT52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7742919921875 2 557.774396 1113.53424 0.30788 0.00017173 0.40139 0.00022388 0.70927 0.00039561 557.7736631751144 48.201 0.35563 48.201 47.995 48.351 0 44 17 3 0 0 0 0.47869 1 26434 26434 17.443 2.861 1 17197000 29466 1906 19533 19911 34724 34724 -0.017985710018365353 KYLDVHSMHQL 11 Unmodified _KYLDVHSMHQL_ 0 0 0 ENST00000544643.5_1_16:30771925-30772616:-|nuORF;ENST00000546006.5_1_16:30771925-30773129:-|nuORF;nc|ENSG00000196118|A1A4V9-4|CFAP119;nc|ENSG00000196118|A1A4V9-2|CFAP119;ENSG00000196118|ENST00000543610|CFAP119 ENST00000544643.5_1_16:30771925-30772616:-|nuORF ENST00000544643.5_1_16:30771925-30772616:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.5675048828125 3 457.567695 1369.68126 0.61614 0.00028192 0.57739 0.00026419 1.1935 0.00054612 457.56794705151407 40.482 0.37134 35.953 35.774 36.145 -4.5294 57 22 3 0 0 0 2.1084E-05 2 24110 24110;24252 93.928 80.409 1 50816000 29467 9763 19534 19912 34725;34726 34725 0.01120202611446075 KYLDVHSMHQL 11 Oxidation (M) _KYLDVHSM(Oxidation (M))HQL_ KYLDVHSM(1)HQL KYLDVHSM(120)HQL 0 0 1 ENST00000544643.5_1_16:30771925-30772616:-|nuORF;ENST00000546006.5_1_16:30771925-30773129:-|nuORF;nc|ENSG00000196118|A1A4V9-4|CFAP119;nc|ENSG00000196118|A1A4V9-2|CFAP119;ENSG00000196118|ENST00000543610|CFAP119 ENST00000544643.5_1_16:30771925-30772616:-|nuORF ENST00000544643.5_1_16:30771925-30772616:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.8997192382812 3 462.899333 1385.67617 NaN NaN NaN NaN NaN NaN NaN 29.61 1 26.309 25.809 26.809 -3.3016 0 0 0 9.9427E-13 1 16661 16661 117.8 99.938 1 29468 9763 19534 19913 34727 34727 1571 -0.0012410125118549331 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.9075012207031 3 439.907823 1316.70164 0.38103 0.00016762 0.37953 0.00016696 0.76056 0.00033458 439.9079320578798 63.098 0.40409 62.612 62.46 62.864 -0.48617 60 18 4 0 0 0 0.046375 2 34361 34361;34458 51.488 38.632 1 40746000 29469 1761 19535 19914 34728;34729 34728 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.35888671875 2 659.358096 1316.70164 0.44323 0.00029225 0.17861 0.00011777 0.62184 0.00041002 659.3581706213673 63.117 0.29111 62.631 62.48 62.771 -0.48617 43 13 4 0 0 0 0.069578 2 34469 34371;34469 53.47 31.933 1 14660000 29470 1761 19535 19914 34730;34731 34731 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9076538085938 3 439.907823 1316.70164 0.56357 0.00024792 -0.38669 -0.00017011 0.17688 7.7812E-05 439.907628026 62.651 0.36472 62.63 62.467 62.832 -0.021614 69 18 5 0 0 0 0.11824 2 34191 34191;34302 44.392 30.174 1 74095000 29471 1761 19535 19914 34732;34733 34732 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.3570556640625 2 659.358096 1316.70164 0.64641 0.00042622 -0.67856 -0.00044741 -0.032144 -2.1195E-05 659.3573483493018 62.633 0.30492 62.611 62.486 62.791 -0.021614 50 15 4 0 0 0 0.025682 1 34214 34214 70.496 48.959 1 28554000 29472 1761 19535 19914 34734 34734 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.9081726074219 3 439.907823 1316.70164 1.3119 0.00057712 -0.10199 -4.4868E-05 1.2099 0.00053225 439.9077120308646 89.439 0.62502 83.263 82.901 83.526 -6.1757 134 34 5 0 0 0 0.17714 3 58994 58871;58994;59117 31.636 23.758 1 340260000 29473 1761 19535 19914 34735;34736;34737 34736 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.3614501953125 2 659.358096 1316.70164 0.90558 0.0005971 -0.12621 -8.3217E-05 0.77937 0.00051389 659.3579975812437 89.457 0.57307 83.281 82.935 83.508 -6.1757 123 31 5 0 0 0 2.4004E-05 3 58899 58899;59019;59143 125.18 88.675 1 306000000 29474 1761 19535 19914 34738;34739;34740 34738 0.055956965429231786 KYLDVKFEYL 10 Unmodified _KYLDVKFEYL_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 439.907823 1316.70164 0.22387 9.8482E-05 1.4413 0.00063402 1.6651 0.0007325 439.9082789919794 62.647 0.22039 62.647 62.529 62.749 0 0.017505 0.0020447 NaN 51.488 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 587920 29475 1761 19535 19914 0.055956965429231786 KYLEAVEKV 9 Unmodified _KYLEAVEKV_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.8104248046875 2 539.810782 1077.60701 -1.0667 -0.00057582 0.4247 0.00022926 -0.64201 -0.00034656 539.8112036747184 32.366 0.1162 32.366 32.297 32.414 0 8 5 2 0 0 0 0.0084349 1 16909 16909 98.73 51.136 1 3331700 29476 3250 19536 19915 34741 34741 0.0713118279156788 KYLEAVEKV 9 Unmodified _KYLEAVEKV_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7477416992188 2 539.810782 1077.60701 1.0862 0.00058636 -0.98958 -0.00053419 0.096651 5.2173E-05 539.8103113812309 37.254 0.25989 32.971 32.827 33.087 -4.2835 19 15 2 0 0 0 0.064235 1 21894 21894 46.022 16.182 1 9348900 29477 3250 19536 19915 34742 34742 0.0713118279156788 KYLEDFITNI 10 Unmodified _KYLEDFITNI_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.330322265625 2 628.332079 1254.6496 0.47907 0.00030102 -1.9659 -0.0012353 -1.4868 -0.00093424 628.3296729706809 75.636 0.20145 75.159 75.011 75.212 -0.47714 15 9 2 0 0 0 0.61603 2 41420 41363;41420 16.149 9.4259 1 1471300 29478 5032 19537 19916 34743;34744 34744 0.032465331291405164 KYLEDFITNI 10 Unmodified _KYLEDFITNI_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3323364257812 2 628.332079 1254.6496 1.0704 0.00067255 -0.82296 -0.00051709 0.24741 0.00015546 628.8333570188547 96.387 0.20486 90.211 90.084 90.289 -6.1757 18 11 2 0 0 0 0.040797 1 63859 63859 80.676 20.602 1 13154000 29479 5032 19537 19916 34745 34745 0.032465331291405164 KYLEDRGEVTF 11 Unmodified _KYLEDRGEVTF_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 678.8430786132812 2 678.843342 1355.67213 0.18078 0.00012272 0.029451 1.9992E-05 0.21023 0.00014271 678.8433756502237 39.137 0.27332 39.137 38.97 39.244 0 34 12 4 0 0 0 0.064626 1 20922 20922 42.835 31.34 1 7043300 29480 8280 19538 19917 34746 34746 0.008521325267565771 KYLEDRGEVTF 11 Unmodified _KYLEDRGEVTF_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.3468627929688 2 678.843342 1355.67213 0.77533 0.00052633 0.84229 0.00057178 1.6176 0.0010981 678.8430724126273 44.413 0.32988 39.561 39.371 39.701 -4.852 45 24 3 0 0 0 0.00061588 2 27153 27022;27153 112.04 80.773 1 19092000 29481 8280 19538 19917 34747;34748 34748 0.008521325267565771 KYLEDRGEVTF 11 Unmodified _KYLEDRGEVTF_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.898681640625 3 452.897987 1355.67213 0.72487 0.00032829 -0.95427 -0.00043219 -0.2294 -0.00010389 452.898028148488 44.371 0.31747 39.519 39.371 39.688 -4.852 63 23 3 0 0 0 0.4121 1 27110 27110 20.871 10.344 1 43640000 29482 8280 19538 19917 34749 34749 0.008521325267565771 KYLEDRGEVTF 11 Unmodified _KYLEDRGEVTF_ 0 0 0 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67044605-67048428:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 452.897987 1355.67213 -0.12754 -5.7764E-05 1.5519 0.00070287 1.4244 0.00064511 453.2333681581855 39.441 0.17356 39.143 39.07 39.243 -0.29716 -0.18782 0.0026822 NaN 20.871 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2410800 29483 8280 19538 19917 0.008521325267565771 KYLEEFITNI 10 Unmodified _KYLEEFITNI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8399658203125 2 635.339904 1268.66525 0.98482 0.0006257 -0.77549 -0.0004927 0.20933 0.000133 635.8398186645969 96.959 0.17087 90.783 90.674 90.845 -6.1757 12 9 2 0 0 0 0.2125 1 64277 64277 43.982 17.714 1 9600400 29484 5578 19539 19918 34750 34750 0.04166819646206932 KYLEEFPDGF 10 Unmodified _KYLEEFPDGF_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.32177734375 2 622.795329 1243.5761 0.23274 0.00014495 -1.2821 -0.00079848 -1.0494 -0.00065353 622.7951640366691 64.713 0.33461 64.713 64.519 64.853 0 24 16 2 0 0 0 0.20412 1 36038 36038 29.082 14.243 1 1615200 29485 4881 19540 19919 34751 34751 -0.035940153133424246 KYLEENVMRHF 11 Unmodified _KYLEENVMRHF_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2463073730469 3 489.246733 1464.71837 0.13262 6.4883E-05 -0.35684 -0.00017458 -0.22422 -0.0001097 489.2466555153403 39.153 0.15533 38.866 38.787 38.943 -0.28687 12 6 2 0 0 0 0.041516 1 20652 20652 52.735 48.619 1 3050200 29486 3923 19541 19920 34752 34752 0.004598741571953724 KYLEENVMRHF 11 Unmodified _KYLEENVMRHF_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2474670410156 3 489.246733 1464.71837 0.75157 0.0003677 1.3326 0.00065199 2.0842 0.0010197 489.24766488598067 76.059 0.56843 69.883 69.543 70.111 -6.1757 49 30 2 0 0 0 0.38865 1 49759 49759 22.109 17.703 1 14044000 29487 3923 19541 19920 34753 34753 0.004598741571953724 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.9226684570312 3 490.922249 1469.74492 0.52971 0.00026005 -0.18408 -9.0368E-05 0.34563 0.00016968 490.92232631190325 31.018 0.41888 30.915 30.691 31.109 -0.10269 61 16 6 0 0 0 0.14513 2 16055 16055;16159 37.251 31.728 1 130190000 29488 3013 19542 19921 34754;34755 34754 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.4434509277344 4 368.443506 1469.74492 0.34919 0.00012866 0.013419 4.9442E-06 0.36261 0.0001336 368.4435735947416 31.031 0.19197 30.928 30.792 30.984 -0.10269 20 7 3 0 0 0 0.16388 1 16094 16094 35.08 30.674 1 5674700 29489 3013 19542 19921 34756 34756 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.9225769042969 3 490.922249 1469.74492 0.17027 8.3591E-05 0.39638 0.00019459 0.56665 0.00027818 490.92254875432826 30.767 0.34451 30.797 30.67 31.015 0.030106 59 14 6 0 0 0 0.028917 2 16071 16071;16175 55.467 50.751 1 48642000 29490 3013 19542 19921 34757;34758 34757 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.4439086914062 4 368.443506 1469.74492 -0.18621 -6.8607E-05 0.39444 0.00014533 0.20824 7.6723E-05 368.4438834393969 30.802 0.18863 30.832 30.737 30.925 0.030104 16 7 3 0 0 0 0.72131 1 16127 16127 2.2527 1.7468 1 1430900 29491 3013 19542 19921 34759 34759 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9222106933594 3 490.922249 1469.74492 0.79712 0.00039132 -1.1741 -0.00057637 -0.37695 -0.00018505 490.9216579816001 35.163 0.91769 31.068 30.735 31.653 -4.0951 200 55 6 0 0 0 0.053529 3 20185 20185;20311;20441 50.13 43.507 1 2685800000 29492 3013 19542 19921 34760;34761;34762 34760 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.4443664550781 4 368.443506 1469.74492 1.4425 0.00053147 -0.23065 -8.498E-05 1.2118 0.00044649 368.4433247473957 35.162 0.64528 31.067 30.771 31.416 -4.0951 137 38 5 0 0 0 0.038129 3 20215 20215;20335;20465 53.47 43.154 1 456570000 29493 3013 19542 19921 34763;34764;34765 34763 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 735.8811645507812 2 735.879736 1469.74492 0.73301 0.00053941 -0.70798 -0.00052099 0.025037 1.8424E-05 735.8794316660056 35.16 0.4573 31.065 30.801 31.259 -4.0951 88 26 5 0 0 0 4.2635E-15 2 20257 20257;20371 128.58 98.738 1 123960000 29494 3013 19542 19921 34766;34767 34766 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.9222412109375 3 490.922249 1469.74492 0.97812 0.00048018 0.034071 1.6726E-05 1.0122 0.00049691 490.9222621013535 61.365 3.3981 55.218 53.253 56.651 -6.1478 390 182 3 0 0 0 0.00086394 15 39623 38205;38302;38444;38597;38732;38865;38989;39111;39237;39366;39492;39623;39753;39883;40014 84.738 77.261 1 73307000 29495 3013 19542 19921 34768;34769;34770;34771;34772;34773;34774;34775;34776;34777;34778;34779;34780;34781;34782 34779 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MSMS AL20221201_MKP_PDAC_01 4 490.9231262207031 3 490.922249 1469.74492 NaN NaN NaN NaN NaN NaN NaN 62.892 1 56.716 56.216 57.216 -6.1757 0 0 0 0.48432 1 40607 40607 25.155 21.568 1 29496 3013 19542 19921 34783 34783 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MSMS AL20221201_MKP_PDAC_01 4 490.9227905273438 3 490.922249 1469.74492 NaN NaN NaN NaN NaN NaN NaN 63.095 1 56.919 56.419 57.419 -6.1757 0 0 0 0.17711 1 40755 40755 40.714 37.127 1 29497 3013 19542 19921 34784 34784 0.028835630485218644 KYLEERAMRQF 11 Unmodified _KYLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 735.879736 1469.74492 0.16619 0.0001223 1.4058 0.0010345 1.572 0.0011568 736.3827344663857 31.031 0.09499 30.928 30.864 30.959 -0.10269 -0.068427 0.0029235 NaN 128.58 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2043500 29498 3013 19542 19921 0.028835630485218644 KYLEESNFV 9 Unmodified _KYLEESNFV_ 0 0 0 nc|ENSG00000165025|P43405-2|SYK;ENSG00000165025|ENST00000375754|SYK nc|ENSG00000165025|P43405-2|SYK nc|ENSG00000165025|P43405-2|SYK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7815551757812 2 564.782222 1127.54989 -0.15991 -9.0315E-05 0.35555 0.00020081 0.19564 0.00011049 564.7823304143079 44.715 0.13922 44.715 44.61 44.749 0 9 7 2 0 0 0 0.030212 1 24339 24339 69.105 32.599 1 6351300 29499 7280 19543 19922 34785 34785 -0.008782844848155946 KYLEETNSL 9 Unmodified _KYLEETNSL_ 0 0 0 nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7808837890625 2 548.779679 1095.5448 -0.35233 -0.00019335 0.28797 0.00015803 -0.064358 -3.5318E-05 548.7801816335607 33.934 0.30104 33.934 33.783 34.084 0 35 14 3 0 0 0 0.0086904 1 17795 17795 107.19 57.254 1 19925000 29500 10206 19544 19923 34786 34786 0.0008541165257156536 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3370361328125 2 563.336967 1124.65938 0.52861 0.00029779 -0.25985 -0.00014638 0.26876 0.0001514 563.3368355063158 53.128 0.38254 52.677 52.496 52.878 -0.45173 67 19 5 0 0 0 0.0091809 2 28672 28672;28781 82.529 36.508 1 48795000 29501 3078 19545 19924 34787;34788 34787 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8944702148438 3 375.893737 1124.65938 0.35266 0.00013256 -0.18027 -6.7762E-05 0.17239 6.4802E-05 375.89365272749325 53.143 0.32574 52.691 52.515 52.841 -0.45173 38 16 3 0 0 0 0.171 1 28698 28698 26.021 17.576 1 8503700 29502 3078 19545 19924 34789 34789 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3375854492188 2 563.336967 1124.65938 0.95945 0.00054049 -0.70395 -0.00039656 0.25549 0.00014393 563.336566164995 52.802 0.33809 52.738 52.563 52.901 -0.063423 54 16 4 0 0 0 0.011739 2 28672 28574;28672 85.642 47.668 1 24939000 29503 3078 19545 19924 34790;34791 34791 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8936767578125 3 375.893737 1124.65938 0.53271 0.00020024 -0.18999 -7.1417E-05 0.34271 0.00012882 375.893573865325 52.802 0.28002 52.739 52.583 52.863 -0.063423 31 13 3 0 0 0 0.34134 1 28615 28615 15.248 7.7714 1 5303500 29504 3078 19545 19924 34792 34792 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3378295898438 2 563.336967 1124.65938 0.61518 0.00034655 0.53232 0.00029987 1.1475 0.00064643 563.3374037486624 58.205 0.42616 52.178 51.957 52.383 -6.0275 38 22 2 0 0 0 0.011739 1 37219 37219 82.529 38.671 1 30156000 29505 3078 19545 19924 34793 34793 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3378295898438 2 563.336967 1124.65938 1.2431 0.0007003 0.17289 9.7394E-05 1.416 0.00079769 563.3373005490643 88.622 0.82141 82.446 81.975 82.796 -6.1757 122 45 4 0 0 0 0.014182 4 58506 58252;58379;58506;58628 82.529 31.674 1 87556000 29506 3078 19545 19924 34794;34795;34796;34797 34796 0.10203765925189145 KYLEHPLLL 9 Unmodified _KYLEHPLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.894287109375 3 375.893737 1124.65938 1.5644 0.00058805 0.20148 7.5736E-05 1.7659 0.00066378 375.89372131191874 88.561 0.71933 82.386 82.043 82.763 -6.1757 84 39 3 0 0 0 0.171 3 58437 58296;58437;58557 26.021 20.581 1 37565000 29507 3078 19545 19924 34798;34799;34800 34799 0.10203765925189145 KYLEKYYNL 9 Unmodified _KYLEKYYNL_ 0 0 0 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 MSMS AL20221201_MKP_PDAC_01 4 617.3296508789062 2 617.329339 1232.64412 NaN NaN NaN NaN NaN NaN NaN 45.303 1 40.348 39.848 40.848 -4.9549 0 0 0 0.041018 1 27785 27785 61.602 41.148 1 29508 9850 19546 19925 34801 34801 0.037108543373278735 KYLELCVDL 9 Carbamidomethyl (C) _KYLELC(Carbamidomethyl (C))VDL_ KYLELC(1)VDL KYLELC(76)VDL 0 1 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.8024291992188 2 576.8021 1151.58965 1.2396 0.00071498 -1.3184 -0.00076046 -0.078861 -4.5487E-05 576.8016710085044 87.825 1.2948 81.649 80.982 82.276 -6.1757 258 71 5 0 0 0 0.011671 2 57900 57900;58142 75.761 27.415 1 235860000 29509 2503 19547 19926 34802;34803 34802 250 0.019915191942573074 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(93)IYSM(93) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2799072265625 2 605.280143 1208.54573 -0.034916 -2.1134E-05 -0.31419 -0.00019017 -0.3491 -0.0002113 605.2799781575201 39.266 0.73482 39.266 39.077 39.812 0 113 35 5 0 0 0 0.0082475 3 21107 20979;21000;21107 92.653 54.679 1 51439000 29510 10362 19548 19927 34804;34805;34806 34806 1688;1689 -0.05019833294386444 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(73)IYSM(73) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2813720703125 2 605.280143 1208.54573 -0.033247 -2.0124E-05 -0.79244 -0.00047965 -0.82569 -0.00049977 605.2799722028012 39.645 0.53665 39.347 39.154 39.69 -0.29716 108 25 5 0 0 0 0.012668 2 20857 20857;21068 72.968 42.331 1 101850000 29511 10362 19548 19927 34807;34808 34807 1688;1689 -0.05019833294386444 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(120)IYSM(120) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.28076171875 2 605.280143 1208.54573 0.26203 0.0001586 -1.3221 -0.00080027 -1.0601 -0.00064167 605.2804217540537 39.328 0.8576 39.339 39.001 39.859 0.011456 127 40 5 0 0 0 0.0038489 2 20886 20886;20990 122.18 78.321 1 35942000 29512 10362 19548 19927 34809;34810 34809 1688;1689 -0.05019833294386444 KYLEMIYSM 9 2 Oxidation (M) _KYLEM(Oxidation (M))IYSM(Oxidation (M))_ KYLEM(1)IYSM(1) KYLEM(93)IYSM(93) 0 0 2 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.2808837890625 2 605.280143 1208.54573 0.078559 4.755E-05 -0.46406 -0.00028089 -0.3855 -0.00023334 605.2801252896935 45.442 0.55026 40.487 40.239 40.789 -4.9549 126 37 4 0 0 0 0.0082475 3 27740 27740;27878;28030 92.653 58.764 1 174170000 29513 10362 19548 19927 34811;34812;34813 34811 1688;1689 -0.05019833294386444 KYLEMIYSM 9 Oxidation (M) _KYLEM(Oxidation (M))IYSM_ KYLEM(1)IYSM KYLEM(39)IYSM(-39) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2831420898438 2 597.282686 1192.55082 0.59126 0.00035315 -0.62055 -0.00037064 -0.029294 -1.7497E-05 597.2823249085338 52.429 0.2505 51.995 51.851 52.101 -0.43367 34 12 4 0 0 0 0.047788 1 28294 28294 45.7 16.618 2 12629000 29514 10362 19548 19928 34814 34814 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEM(Oxidation (M))IYSM_ KYLEM(1)IYSM KYLEM(52)IYSM(-52) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.28271484375 2 597.282686 1192.55082 0.50547 0.00030191 -0.92321 -0.00055142 -0.41774 -0.00024951 597.2822435301995 52.664 0.25513 52.231 52.101 52.356 -0.43367 34 12 3 0 0 0 0.029718 1 28489 28489 55.503 19.376 2 9387200 29515 10362 19548 19928 34815 34815 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEM(Oxidation (M))IYSM_ KYLEM(1)IYSM KYLEM(52)IYSM(-52) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2832641601562 2 597.282686 1192.55082 0.30054 0.00017951 -0.22496 -0.00013437 0.075575 4.514E-05 597.2829505964171 52.092 0.27215 52.034 51.896 52.168 -0.058918 32 12 4 0 0 0 0.032796 1 28202 28202 53.833 24.751 2 5958800 29516 10362 19548 19928 34816 34816 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEMIYSM(Oxidation (M))_ KYLEMIYSM(1) KYLEM(-120)IYSM(120) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2826538085938 2 597.282686 1192.55082 0.47164 0.0002817 -0.39216 -0.00023423 0.079477 4.747E-05 597.2826860768118 57.295 0.53366 51.268 51.035 51.569 -6.0275 93 29 4 0 0 0 0.0038489 3 36557 36557;36681;36805 122.18 51.996 2 175340000 29517 10362 19548 19928 34817;34818;34819 34817 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEM(Oxidation (M))IYSM_ KYLEM(1)IYSM KYLEM(66)IYSM(-66) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2822265625 2 597.282686 1192.55082 0.88791 0.00053033 -1.0822 -0.00064637 -0.19427 -0.00011604 597.2821431791566 58.926 0.76798 52.852 52.492 53.26 -6.0745 132 42 4 0 0 0 0.012668 2 37925 37671;37925 72.968 31.128 2 126270000 29518 10362 19548 19928 34820;34821 34821 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEM(Oxidation (M))IYSM_ KYLEM(1)IYSM KYLEM(63)IYSM(-63) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.28369140625 2 597.282686 1192.55082 0.8998 0.00053743 0.16893 0.0001009 1.0687 0.00063833 597.2830489267452 63.072 1.0723 56.896 56.302 57.375 -6.1757 129 57 3 0 0 0 0.017075 3 40641 40504;40641;40774 66.457 32.055 2 23937000 29519 10362 19548 19928 34822;34823;34824 34823 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEMIYSM(Oxidation (M))_ KYLEMIYSM(1) KYLEM(-76)IYSM(76) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MSMS AL20221201_MKP_PDAC_01 4 597.28271484375 2 597.282686 1192.55082 NaN NaN NaN NaN NaN NaN NaN 57.765 1 51.738 51.238 52.238 -6.0275 0 0 0 0.019104 1 36963 36963 79.596 35.738 2 29520 10362 19548 19928 34825 34825 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEMIYSM(Oxidation (M))_ KYLEMIYSM(1) KYLEM(-46)IYSM(46) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MSMS AL20221201_MKP_PDAC_01 4 597.2808837890625 2 597.282686 1192.55082 NaN NaN NaN NaN NaN NaN NaN 57.958 1 51.931 51.431 52.431 -6.0275 0 0 0 0.076083 1 37107 37107 49.554 15.153 2 29521 10362 19548 19928 34826 34826 1688;1689 -0.03775529431800351 KYLEMIYSM 9 Oxidation (M) _KYLEMIYSM(Oxidation (M))_ KYLEMIYSM(1) KYLEM(-75)IYSM(75) 0 0 1 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MSMS AL20221201_MKP_PDAC_01 4 597.28125 2 597.282686 1192.55082 NaN NaN NaN NaN NaN NaN NaN 58.294 1 52.219 51.719 52.719 -6.0745 0 0 0 0.019743 1 37345 37345 78.728 38.771 2 29522 10362 19548 19928 34827 34827 1688;1689 -0.03775529431800351 KYLERESPDC 10 Unmodified _KYLERESPDC_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8601684570312 3 413.860656 1238.56014 -0.13837 -5.7267E-05 -1.8436 -0.00076298 -1.9819 -0.00082025 413.8601477534208 35.014 0.21916 35.041 34.924 35.143 0.027401 32 9 4 0 0 0 0.67413 1 18456 18456 5.7834 0.73591 1 9325200 + 29523 19124 19549 19929 34828 34828 -0.04960044821882548 KYLERESPDC 10 Unmodified _KYLERESPDC_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 413.860656 1238.56014 -0.35419 -0.00014659 -1.7737 -0.00073408 -2.1279 -0.00088066 413.86019287593615 35.256 0.109 35.033 34.958 35.067 -0.2224 -0.0040079 7.7382E-05 NaN 5.7834 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1447300 + 29524 19124 19549 19929 -0.04960044821882548 KYLERESPDC 10 Unmodified _KYLERESPDC_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.860656 1238.56014 -0.13837 -5.7267E-05 -1.8436 -0.00076298 -1.9819 -0.00082025 413.8601477534208 35.014 0.21916 35.041 34.924 35.143 0.027401 0.0040079 -9.3332E-06 NaN 5.7834 32 9 4 NaN NaN NaN NaN 0 NaN NaN 0 9325200 + 29525 19124 19549 19929 -0.04960044821882548 KYLESFLAF 9 Unmodified _KYLESFLAF_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3011474609375 2 559.30005 1116.58555 1.8827 0.001053 0.26268 0.00014692 2.1453 0.0011999 559.3002077787525 81.487 0.43735 81.547 81.315 81.752 0.059929 49 16 4 0 0 0 0.047788 1 45065 45065 45.7 7.7256 1 13308000 29526 3800 19550 19930 34829 34829 0.03191797762860915 KYLETYLNL 9 Unmodified _KYLETYLNL_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2;nc|ENSG00000105854|Q15165-3|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8186645507812 2 578.816064 1155.61758 0.10145 5.8721E-05 2.4454 0.0014154 2.5469 0.0014742 578.8176811793884 65.736 0.19009 65.252 65.124 65.314 -0.48428 16 7 3 0 0 0 0.023481 1 35880 35880 60.074 10.141 1 2393800 29527 2371 19551 19931 34830 34830 0.045991654460067366 KYLEVVLNTL 10 Unmodified _KYLEVVLNTL_ 0 0 0 ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1;ENST00000580573.1_1_17:45754418-45755781:+|nuORF ENSG00000108424|ENST00000290158|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3522338867188 2 596.352814 1190.69108 0.87406 0.00052125 -1.6576 -0.00098852 -0.78356 -0.00046728 596.8529367625897 97.749 0.07756 91.573 91.523 91.6 -6.1757 7 5 2 0 0 0 0.035244 1 64788 64788 65.474 23.518 1 21308000 29528 2569 19552 19932 34831 34831 0.10335713888480313 KYLFHLIVW 9 Unmodified _KYLFHLIVW_ 0 0 0 ENSG00000133056|ENST00000684373|PIK3C2B;ENST00000496872.1_1_1:204423795-204425171:-|nuORF ENSG00000133056|ENST00000684373|PIK3C2B ENSG00000133056|ENST00000684373|PIK3C2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9066772460938 3 406.905977 1217.6961 1.4597 0.00059395 -0.10876 -4.4253E-05 1.3509 0.00054969 406.90598886554056 81.616 0.2984 81.676 81.533 81.832 0.059929 29 11 3 0 0 0 0.34134 1 45130 45130 15.248 6.2722 1 3865600 29529 4483 19553 19933 34832 34832 0.09596062541731953 KYLFSLALL 9 Unmodified _KYLFSLALL_ 0 0 0 nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 nc|ENSG00000170190|O15375-2|SLC16A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3294677734375 2 534.328611 1066.64267 2.1079 0.0011263 -0.29772 -0.00015908 1.8102 0.00096725 534.3284453630138 95.095 0.35001 95.099 94.942 95.292 0.0041504 38 12 4 0 0 0 0.032796 1 52828 52828 53.833 0 1 5338400 29530 7957 19554 19934 34833 34833 0.11201265039221653 KYLGIINMF 9 Oxidation (M) _KYLGIINM(Oxidation (M))F_ KYLGIINM(1)F KYLGIINM(52)F 0 0 1 nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8020629882812 2 557.801903 1113.58925 1.3012 0.00072579 -0.19418 -0.00010831 1.107 0.00061748 557.8016589031176 66.246 0.34665 66.256 66.033 66.38 0.0095596 31 17 2 0 0 0 0.03568 1 36321 36321 52.268 41.444 1 5041500 29531 16118 19555 19935 34834 34834 1795 0.037001442650534955 KYLGLLENL 9 Unmodified _KYLGLLENL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8135375976562 2 531.813325 1061.6121 0.62346 0.00033156 -2.0634 -0.0010974 -1.44 -0.0007658 531.8131755478303 73.253 0.73742 72.777 72.407 73.144 -0.47588 106 32 5 0 0 0 0.018301 1 40072 40072 65.235 30.833 1 21510000 29532 10015 19556 19936 34835 34835 0.08375486654176711 KYLGLLENL 9 Unmodified _KYLGLLENL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8139038085938 2 531.813325 1061.6121 0.10085 5.3636E-05 -1.5677 -0.00083372 -1.4668 -0.00078008 531.8135515379048 72.767 0.5633 72.809 72.465 73.029 0.041725 67 26 3 0 0 0 0.014417 1 39964 39964 69.105 16.837 1 19438000 29533 10015 19556 19936 34836 34836 0.08375486654176711 KYLGLLENL 9 Unmodified _KYLGLLENL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.814208984375 2 531.813325 1061.6121 1.1614 0.00061767 0.29738 0.00015815 1.4588 0.00077582 531.8135187546961 96.258 0.39571 90.082 89.893 90.289 -6.1757 69 23 4 0 0 0 0.036857 2 63828 63706;63828 51.63 17.228 1 258670000 29534 10015 19556 19936 34837;34838 34838 0.08375486654176711 KYLGLLENL 9 Unmodified _KYLGLLENL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.813325 1061.6121 0.56742 0.00030176 -0.69432 -0.00036925 -0.1269 -6.7489E-05 531.8133388206646 72.85 0.31774 72.85 72.734 73.052 0 0.037844 0.0008744 NaN 69.105 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1045400 29535 10015 19556 19936 0.08375486654176711 KYLGNATAIFF 11 Unmodified _KYLGNATAIFF_ 0 0 0 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8377075195312 2 622.837331 1243.66011 0.53544 0.00033349 -0.28679 -0.00017862 0.24865 0.00015487 622.8371392636237 73.85 0.20829 73.894 73.755 73.963 0.043983 15 9 2 0 0 0 0.10451 1 40722 40722 41.956 11.319 1 3274900 29536 9932 19557 19937 34839 34839 0.048025605741941035 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8824462890625 3 378.88172 1133.62333 -0.10564 -4.0026E-05 0.23856 9.0384E-05 0.13291 5.0359E-05 378.8816967020216 45.026 0.1126 44.702 44.62 44.732 -0.32425 8 5 2 0 0 0 0.078314 1 24019 24019 38.176 24.561 1 15365000 29537 1181 19558 19938 34840 34840 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3206787109375 2 567.818941 1133.62333 0.062657 3.5578E-05 0.71477 0.00040586 0.77742 0.00044144 567.819419955598 45.052 0.16445 44.727 44.601 44.765 -0.32425 17 8 3 0 0 0 0.012668 1 24021 24021 81.613 17.377 1 48747000 29538 1181 19558 19938 34841 34841 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3196411132812 2 567.818941 1133.62333 0.049125 2.7894E-05 0.22186 0.00012598 0.27099 0.00015387 567.8190682906363 44.763 0.28243 44.741 44.612 44.895 -0.022064 43 14 4 0 0 0 0.012668 2 23988 23988;24085 92.822 46.801 1 94833000 29539 1181 19558 19938 34842;34843 34842 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.216064453125 3 378.88172 1133.62333 -0.12698 -4.811E-05 -1.3279 -0.00050311 -1.4549 -0.00055122 378.8818507620965 44.763 0.25988 44.741 44.595 44.855 -0.022064 39 13 5 0 0 0 0.07087 1 23999 23999 39.95 29.799 1 54392000 29540 1181 19558 19938 34844 34844 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8818969726562 3 378.88172 1133.62333 NaN NaN NaN NaN NaN NaN NaN 44.901 1 44.879 44.379 45.379 -0.022064 0 0 0 0.75456 1 24102 24102 7.609 4.7657 1 29541 1181 19558 19938 34845 34845 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8822021484375 3 378.88172 1133.62333 1.3118 0.000497 -2.1965 -0.00083222 -0.88476 -0.00033522 378.8817353195041 49.916 0.53902 44.377 44.141 44.68 -5.5391 82 34 3 0 0 0 0.21643 3 31259 31123;31259;31357 21.537 14.435 1 142890000 29542 1181 19558 19938 34846;34847;34848 34847 0.06186308748306146 KYLGQLHYL 9 Unmodified _KYLGQLHYL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8195190429688 2 567.818941 1133.62333 0.94552 0.00053689 0.54498 0.00030945 1.4905 0.00084634 567.8191003115429 49.934 0.46648 44.395 44.141 44.607 -5.5391 87 29 4 0 0 0 0.010301 2 31154 31154;31294 88.904 58.267 1 147550000 29543 1181 19558 19938 34849;34850 34849 0.06186308748306146 KYLGRASE 8 Unmodified _KYLGRASE_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.2527160644531 2 462.250892 922.48723 0.3286 0.00015189 3.0191 0.0013956 3.3477 0.0015475 462.25218633556955 48.258 0.1718 47.895 47.839 48.011 -0.36324 12 8 2 0 0 0 0.42686 1 25915 25915 41.84 3.8656 1 2106000 + 29544 24691 19559 19939 34851 34851 0.022886142376592034 KYLGVPKYW 9 Unmodified _KYLGVPKYW_ 0 0 0 ENSG00000100749|ENST00000216639|VRK1;ENST00000555351.1_1_14:97263783-97319303:+|nuORF ENSG00000100749|ENST00000216639|VRK1 ENSG00000100749|ENST00000216639|VRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3239135742188 2 577.32386 1152.63317 0.89478 0.00051658 -1.3667 -0.00078903 -0.47193 -0.00027246 577.322681318995 49.426 0.18018 49.378 49.271 49.451 -0.047916 15 8 2 0 0 0 0.1773 1 26702 26702 25.399 18.676 1 1508600 29545 1872 19560 19940 34852 34852 0.06295496753705265 KYLHPPPHL 9 Unmodified _KYLHPPPHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8787231445312 3 367.87831 1100.6131 0.33735 0.0001241 0.56982 0.00020962 0.90717 0.00033373 368.21281997676374 26.215 0.25369 26.183 26.123 26.376 -0.031708 18 14 2 0 0 0 0.08691 1 13467 13467 36.127 15.712 1 6646800 29546 1194;6202 19561 19941 34853 34853 0.06681745813739326 KYLHPPPHL 9 Unmodified _KYLHPPPHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8790588378906 3 367.87831 1100.6131 1.1764 0.00043277 0.22909 8.4279E-05 1.4055 0.00051705 367.8785957871314 29.711 0.45428 26.409 26.271 26.726 -3.3016 32 23 2 0 0 0 0.011968 1 16713 16713 74.929 42.143 1 28285000 29547 1194;6202 19561 19941 34854 34854 0.06681745813739326 KYLHPPPHL 9 Unmodified _KYLHPPPHL_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20221201_MKP_PDAC_01 4 367.8790893554688 3 367.87831 1100.6131 NaN NaN NaN NaN NaN NaN NaN 29.508 1 26.207 25.707 26.707 -3.3016 0 0 0 0.038824 1 16588 16588 62.573 36.305 1 29548 1194;6202 19561 19941 34855 34855 0.06681745813739326 KYLHPPTHL 9 Unmodified _KYLHPPTHL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.5434875488281 3 369.209948 1104.60801 NaN NaN NaN NaN NaN NaN NaN 26.943 1 26.911 26.411 27.411 -0.031708 0 0 0 0.025979 1 13870 13870 55.503 24.799 1 29549 5189 19562 19942 34856 34856 0.059894419511238084 KYLHPPTHL 9 Unmodified _KYLHPPTHL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2101135253906 3 369.209948 1104.60801 0.19002 7.0157E-05 -0.41329 -0.00015259 -0.22327 -8.2435E-05 369.54405803031403 26.892 0.52602 26.92 26.497 27.023 0.028662 38 22 2 0 0 0 0.095405 2 13983 13870;13983 38.176 25.133 1 14566000 29550 5189 19562 19942 34857;34858 34858 0.059894419511238084 KYLHPPTHL 9 Unmodified _KYLHPPTHL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2104187011719 3 369.209948 1104.60801 1.669 0.00061622 -0.16967 -6.2642E-05 1.4994 0.00055358 369.20986132195924 30.565 0.6436 27.068 26.655 27.299 -3.497 87 31 3 0 0 0 0.022193 3 17051 17051;17173;17290 55.503 32.766 1 126280000 29551 5189 19562 19942 34859;34860;34861 34859 0.059894419511238084 KYLHPPTHL 9 Unmodified _KYLHPPTHL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3114624023438 2 553.311284 1104.60801 1.1336 0.00062721 -0.49004 -0.00027115 0.64352 0.00035607 553.8123802480358 30.557 0.31835 27.061 26.856 27.175 -3.497 19 15 2 0 0 0 0.0082353 1 17246 17246 96.111 58.137 1 12469000 29552 5189 19562 19942 34862 34862 0.059894419511238084 KYLHPPTHL 9 Unmodified _KYLHPPTHL_ 0 0 0 nc|ENSG00000139793|Q5VZF2-3|MBNL2;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000139793|Q5VZF2|MBNL2;ENSG00000139793|ENST00000679496|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 nc|ENSG00000139793|Q5VZF2-3|MBNL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.209948 1104.60801 -0.60649 -0.00022392 0.78982 0.00029161 0.18334 6.7689E-05 369.210153328342 27.061 0.43477 27.061 26.74 27.174 0 0.044283 0.00092928 NaN 55.503 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1512800 29553 5189 19562 19942 0.059894419511238084 KYLHRVISL 9 Unmodified _KYLHRVISL_ 0 0 0 nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF;nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.9009399414062 3 376.901114 1127.68151 -0.23395 -8.8177E-05 0.18663 7.0342E-05 -0.047319 -1.7835E-05 376.9011649946589 31.441 0.26046 31.471 31.346 31.606 0.030106 37 11 4 0 0 0 0.024189 1 16448 16448 59.368 22.862 1 64717000 29554 6081 19563 19943 34863 34863 0.12277990393613436 KYLHRVISL 9 Unmodified _KYLHRVISL_ 0 0 0 nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF;nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8473510742188 2 564.848033 1127.68151 0.11778 6.6529E-05 -0.50581 -0.0002857 -0.38802 -0.00021917 564.8476076264893 31.445 0.1328 31.475 31.411 31.544 0.030104 8 5 2 0 0 0 0.037118 1 16486 16486 33.445 26.156 1 2830000 29555 6081 19563 19943 34864 34864 0.12277990393613436 KYLHRVISL 9 Unmodified _KYLHRVISL_ 0 0 0 nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;ENST00000537276.5_1_12:123416657-123444319:-|nuORF;nc|ENSG00000150967|Q9NP78-7|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.9015808105469 3 376.901114 1127.68151 1.4766 0.00055654 -0.12324 -4.6448E-05 1.3534 0.0005101 376.9010830431455 85.893 0.63906 79.717 79.479 80.118 -6.1757 94 35 4 0 0 0 0.020316 3 56490 56490;56617;56751 63.227 33.387 1 63546000 29556 6081 19563 19943 34865;34866;34867 34865 0.12277990393613436 KYLHTTIF 8 Unmodified _KYLHTTIF_ 0 0 0 ENSG00000172432|ENST00000307126|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7878112792969 2 511.78711 1021.55967 0.40672 0.00020816 0.25995 0.00013304 0.66667 0.0003412 511.7871598452459 53.19 0.32377 47.386 47.318 47.642 -5.8042 37 20 2 0 0 0 0.42423 1 33598 33598 42.095 7.6928 1 113890000 29557 8217 19564 19944 34868 34868 0.049749483112123016 KYLIAACQHL 10 Unmodified _KYLIAACQHL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2118530273438 3 387.214593 1158.62195 -0.2869 -0.00011109 1.4915 0.00057754 1.2046 0.00046644 387.2150916317463 21.039 0.39367 21.068 20.761 21.154 0.028357 44 18 3 0 0 0 0.6192 1 10577 10577 10.151 1.4052 1 11008000 29558 1070 19565 19945 34869 34869 0.0489835138791932 KYLIKHQNI 9 Unmodified _KYLIKHQNI_ 0 0 0 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2327880859375 3 386.232752 1155.67643 1.0407 0.00040196 -0.31735 -0.00012257 0.72336 0.00027938 386.23261259719555 22.32 0.42321 19.585 19.412 19.835 -2.7348 53 22 4 0 0 0 0.49766 1 12070 12070 7.609 1.8255 1 20891000 29559 7646 19566 19946 34870 34870 0.10481686530988554 KYLIKHQNI 9 Unmodified _KYLIKHQNI_ 0 0 0 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 ENSG00000167635|ENST00000443387|ZNF146 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 386.232752 1155.67643 0.039004 1.5065E-05 -0.10137 -3.9153E-05 -0.062367 -2.4088E-05 386.5669349154068 19.54 0.10654 19.547 19.481 19.588 0.0078487 -0.018631 0.00013476 NaN 7.609 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2081600 29560 7646 19566 19946 0.10481686530988554 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.8255004882812 2 553.826432 1105.63831 0.35461 0.00019639 -0.087357 -4.8381E-05 0.26725 0.00014801 553.8263253474818 71.996 0.35795 71.996 71.84 72.198 0 48 16 4 0 0 0 0.011291 2 40076 40076;40182 96.285 37.606 1 8242800 29561 1678 19567 19947 34871;34872 34871 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8264770507812 2 553.826432 1105.63831 0.78984 0.00043743 -0.72096 -0.00039929 0.068878 3.8147E-05 553.8259586957294 72.375 0.50215 71.899 71.686 72.189 -0.4761 86 23 5 0 0 0 0.011291 2 39658 39558;39658 85.272 26.593 1 143670000 29562 1678 19567 19947 34873;34874 34874 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8262329101562 2 553.826432 1105.63831 0.66859 0.00037029 0.3111 0.0001723 0.9797 0.00054258 553.8265607052225 71.812 0.49662 71.851 71.557 72.054 0.039024 72 23 5 0 0 0 0.011291 2 39490 39490;39590 96.285 42.452 1 39822000 29563 1678 19567 19947 34875;34876 34875 0.08971755825655237 KYLINLETL 9 Unmodified _KYLINLETL_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8272094726562 2 553.826432 1105.63831 0.86721 0.00048029 0.22293 0.00012346 1.0901 0.00060375 553.8264346965078 92.511 0.98358 86.335 85.823 86.806 -6.1757 177 60 4 0 0 0 0.0089732 4 61267 60894;61014;61141;61267 108 36.075 1 476520000 29564 1678 19567 19947 34877;34878;34879;34880 34880 0.08971755825655237 KYLKAVEEL 9 Unmodified _KYLKAVEEL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8196411132812 2 546.818607 1091.62266 0.27031 0.00014781 -0.036477 -1.9946E-05 0.23383 0.00012787 546.8185611994966 35.904 0.32095 35.904 35.732 36.053 0 47 15 4 0 0 0 0.0026383 1 18970 18970 155.03 40.377 1 53989000 29565 763 19568 19948 34881 34881 0.08051469308588821 KYLKAVEEL 9 Unmodified _KYLKAVEEL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8816223144531 3 364.881497 1091.62266 0.07763 2.8326E-05 0.49997 0.00018243 0.5776 0.00021076 364.88170699929157 35.918 0.32095 35.918 35.732 36.053 0 38 15 4 0 0 0 0.091924 1 18993 18993 34.932 12.196 1 17361000 29566 763 19568 19948 34882 34882 0.08051469308588821 KYLKAVEEL 9 Unmodified _KYLKAVEEL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.768798828125 2 546.818607 1091.62266 1.1039 0.00060363 -0.60478 -0.00033071 0.49912 0.00027293 546.8183076628936 41.033 0.52349 36.425 36.1 36.624 -4.6079 72 32 3 0 0 0 0.15936 1 24586 24586 27.629 0 1 75431000 29567 763 19568 19948 34883 34883 0.08051469308588821 KYLKDLLGI 9 Unmodified _KYLKDLLGI_ 0 0 0 ENST00000514847.5_1_12:112150343-112159544:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10;nc|ENSG00000111271|Q6JQN1-4|ACAD10;ENST00000507135.5_1_12:112130513-112159479:+|nuORF ENST00000514847.5_1_12:112150343-112159544:+|nuORF ENST00000514847.5_1_12:112150343-112159544:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3062133789062 2 531.831517 1061.64848 1.2669 0.00067376 -0.64965 -0.0003455 0.61722 0.00032826 531.8309911959007 95.477 0.16904 89.302 89.23 89.399 -6.1757 15 9 2 0 0 0 0.10852 1 63285 63285 27.223 6.8087 1 8220800 29568 2776 19569 19949 34884 34884 0.12012363550888949 KYLKEVLRI 9 Unmodified _KYLKEVLRI_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.9169311523438 3 387.916653 1160.72813 0.19334 7.5001E-05 1.8584 0.00072089 2.0517 0.00079589 387.9168525562132 39.323 1.0687 39.334 38.92 39.989 0.011452 64 50 2 0 0 0 0.085319 1 20907 20907 28.234 8.2467 1 13579000 29569 2737 19570 19950 34885 34885 0.15419430224869757 KYLKEVLRI 9 Unmodified _KYLKEVLRI_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.917236328125 3 387.916653 1160.72813 1.396 0.00054152 0.33646 0.00013052 1.7324 0.00067203 387.91662977529546 88.582 0.46271 82.407 82.206 82.669 -6.1757 58 25 3 0 0 0 0.01958 2 58386 58386;58509 51.488 31.501 1 25465000 29570 2737 19570 19950 34886;34887 34886 0.15419430224869757 KYLKTGFLKW 10 Unmodified _KYLKTGFLKW_ 0 0 0 ENST00000580746.1_1_18:10526126-10532820:+|nuORF;ENST00000582978.5_1_18:10526099-10540502:+|nuORF;ENSG00000134265|ENST00000322897|NAPG ENST00000580746.1_1_18:10526126-10532820:+|nuORF ENST00000580746.1_1_18:10526126-10532820:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.5893859863281 3 428.588536 1282.74378 NaN NaN NaN NaN NaN NaN NaN 91.019 1 84.843 84.343 85.343 -6.1757 0 0 0 0.022036 1 60154 60154 82.445 32.315 1 29571 4581 19571 19951 34888 34888 0.1137171674192814 KYLKVFYKF 9 Unmodified _KYLKVFYKF_ 0 0 0 nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254;ENSG00000213967|ENST00000594466|ZNF726;nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91 nc|ENSG00000213096|O75437-2|ZNF254 nc|ENSG00000213096|O75437-2|ZNF254 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5780639648438 3 412.577749 1234.71142 0.90911 0.00037508 0.2317 9.5595E-05 1.1408 0.00047068 412.5778595501861 90.324 0.24901 84.148 84.008 84.257 -6.1757 25 14 2 0 0 0 0.0081887 1 59629 59629 93.166 62.462 1 14143000 29572 10421 19572 19952 34889 34889 0.10344929338907605 KYLKYPQCL 9 Carbamidomethyl (C) _KYLKYPQC(Carbamidomethyl (C))L_ KYLKYPQC(1)L KYLKYPQC(82)L 0 1 0 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8248291015625 2 606.825909 1211.63727 0.29021 0.00017611 0.91004 0.00055223 1.2002 0.00072834 607.3282773814127 40.536 0.25832 36.006 35.824 36.082 -4.5294 30 15 3 0 0 0 0.009483 1 24163 24163 81.89 50.622 1 11925000 29573 2586 19573 19953 34890 34890 261 0.039912181850922934 KYLLADCNEAF 11 Carbamidomethyl (C) _KYLLADC(Carbamidomethyl (C))NEAF_ KYLLADC(1)NEAF KYLLADC(81)NEAF 0 1 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.3196411132812 2 672.318645 1342.62274 0.79159 0.0005322 -0.32634 -0.0002194 0.46525 0.0003128 672.3184949338556 60.408 0.39033 54.293 54.138 54.528 -6.1147 48 20 3 0 0 0 0.0018376 2 38854 38854;38984 80.676 63.563 1 53312000 29574 7241 19574 19954 34891;34892 34891 709 -0.03486898753726564 KYLLCIPAAL 10 Unmodified _KYLLCIPAAL_ 0 0 0 REV__nc|ENSG00000012779|P09917-5|ALOX5 REV__nc|ENSG00000012779|P09917-5|ALOX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.827392578125 2 552.827921 1103.64129 0.27757 0.00015345 -2.2044 -0.0012187 -1.9268 -0.0010652 552.8264071671256 51.065 0.65177 50.651 50.376 51.028 -0.41351 79 32 4 0 0 0 0.34249 1 27663 27663 23.148 1.4018 1 15057000 + 29575 17067 19575 19955 34893 34893 0.09361307678796038 KYLLDIGAKF 10 Unmodified _KYLLDIGAKF_ 0 0 0 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3425903320312 2 584.342249 1166.66995 1.1501 0.00067204 -3.1008 -0.0018119 -1.9507 -0.0011399 584.3398969969758 89.223 0.49505 83.047 82.796 83.291 -6.1757 43 27 2 0 0 0 0.19566 1 58902 58902 34.222 1.436 1 13878000 29576 4428 19576 19956 34894 34894 0.09327748579607942 KYLLDSPSL 9 Unmodified _KYLLDSPSL_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2900390625 2 518.289682 1034.56481 1.0196 0.00052845 -2.4106 -0.0012494 -1.391 -0.00072093 518.2898088082698 54.405 0.4243 54.405 54.173 54.597 0 68 18 5 0 0 0 0.010611 1 30195 30195 78.728 28.795 1 39407000 29577 9000 19577 19957 34895 34895 0.04891207383184337 KYLLDSPSL 9 Unmodified _KYLLDSPSL_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2899780273438 2 518.289682 1034.56481 NaN NaN NaN NaN NaN NaN NaN 54.963 1 54.485 53.985 54.985 -0.47798 0 0 0 0.019743 1 29802 29802 78.728 28.795 1 29578 9000 19577 19957 34896 34896 0.04891207383184337 KYLLDSPSL 9 Unmodified _KYLLDSPSL_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2899780273438 2 518.289682 1034.56481 NaN NaN NaN NaN NaN NaN NaN 54.503 1 54.436 53.936 54.936 -0.066936 0 0 0 0.016974 1 29601 29601 82.529 27.756 1 29579 9000 19577 19957 34897 34897 0.04891207383184337 KYLLDSPSL 9 Unmodified _KYLLDSPSL_ 0 0 0 nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 nc|ENSG00000181830|Q96A29-2|SLC35C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2899780273438 2 518.289682 1034.56481 1.1069 0.00057368 -0.54528 -0.00028261 0.5616 0.00029107 518.2893719390133 61.353 0.70595 55.205 54.959 55.665 -6.1478 58 35 2 0 0 0 0.014417 2 39618 39489;39618 69.105 27.265 1 260950000 29580 9000 19577 19957 34898;34899 34899 0.04891207383184337 KYLLHSLVF 9 Unmodified _KYLLHSLVF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8905639648438 3 373.890215 1118.64882 0.26748 0.00010001 0.18612 6.959E-05 0.4536 0.0001696 373.8902427704831 61.116 0.2729 61.072 60.927 61.2 -0.04351 42 13 4 0 0 0 0.031062 1 33307 33307 41.956 31.156 1 25893000 29581 1447 19578 19958 34900 34900 0.09423783270767672 KYLLHSLVF 9 Unmodified _KYLLHSLVF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3321533203125 2 560.331685 1118.64882 0.70245 0.0003936 0.27936 0.00015653 0.98181 0.00055014 560.3317552261793 61.125 0.29189 61.081 60.947 61.239 -0.043507 44 14 4 0 0 0 0.011968 1 33336 33336 74.929 42.624 1 33453000 29582 1447 19578 19958 34901 34901 0.09423783270767672 KYLLHSLVF 9 Unmodified _KYLLHSLVF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8908996582031 3 373.890215 1118.64882 1.5151 0.00056647 1.4316 0.00053526 2.9467 0.0011017 373.890205590138 94.903 0.33914 88.727 88.573 88.912 -6.1757 59 18 4 0 0 0 0.10734 2 62810 62810;62932 23.79 12.295 1 89783000 29583 1447 19578 19958 34902;34903 34902 0.09423783270767672 KYLLHSLVF 9 Unmodified _KYLLHSLVF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3306274414062 2 560.331685 1118.64882 1.1662 0.00065344 0.59084 0.00033107 1.757 0.00098451 560.3317184263026 94.887 0.3579 88.711 88.573 88.931 -6.1757 50 19 4 0 0 0 0.020973 2 62814 62814;62930 62.573 37.173 1 142400000 29584 1447 19578 19958 34904;34905 34904 0.09423783270767672 KYLLKVAEL 9 Unmodified _KYLLKVAEL_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.839111328125 2 538.839342 1075.66413 0.61645 0.00033217 0.010456 5.6342E-06 0.62691 0.0003378 538.8393753705067 50.707 0.26485 50.294 50.15 50.415 -0.41351 30 12 3 0 0 0 0.0081887 1 27284 27284 93.166 27.931 1 6136300 29585 1506 19579 19959 34906 34906 0.12932650067932627 KYLLKVAEL 9 Unmodified _KYLLKVAEL_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.839599609375 2 538.839342 1075.66413 1.284 0.00069187 -0.18946 -0.00010209 1.0945 0.00058978 538.8392624119687 50.347 0.26378 50.298 50.169 50.433 -0.048824 31 12 3 0 0 0 0.013118 1 27196 27196 71.708 9.1352 1 6821100 29586 1506 19579 19959 34907 34907 0.12932650067932627 KYLLKVAEL 9 Unmodified _KYLLKVAEL_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8396606445312 2 538.839342 1075.66413 0.31518 0.00016983 0.35378 0.00019063 0.66897 0.00036047 538.8395688132987 55.924 0.33412 50.003 49.84 50.174 -5.9211 28 19 2 0 0 0 0.011291 1 35643 35643 76.825 20.648 1 20725000 29587 1506 19579 19959 34908 34908 0.12932650067932627 KYLLKVAEL 9 Unmodified _KYLLKVAEL_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5621337890625 3 359.561987 1075.66413 1.1017 0.00039613 0.24718 8.8878E-05 1.3489 0.000485 359.5620491000227 55.9 0.21417 49.978 49.878 50.092 -5.9211 20 12 2 0 0 0 0.05447 1 35659 35659 33.445 3.6043 1 11208000 29588 1506 19579 19959 34909 34909 0.12932650067932627 KYLLKVAEL 9 Unmodified _KYLLKVAEL_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.841064453125 2 538.839342 1075.66413 0.86625 0.00046677 1.0584 0.00057029 1.9246 0.0010371 538.8400486654591 83.702 0.68205 77.527 77.192 77.874 -6.1757 64 35 2 0 0 0 0.0081887 2 55047 54926;55047 93.166 27.931 1 15897000 29589 1506 19579 19959 34910;34911 34911 0.12932650067932627 KYLLPPKS 8 Unmodified _KYLLPPKS_ 0 0 0 ENST00000573134.1_1_18:2554662-2567215:-|nuORF;ENSG00000101574|ENST00000574538|METTL4 ENST00000573134.1_1_18:2554662-2567215:-|nuORF ENST00000573134.1_1_18:2554662-2567215:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2924499511719 2 473.292028 944.569503 1.2093 0.00057237 -0.35511 -0.00016807 0.85424 0.0004043 473.29202755698276 50.346 0.24382 50.297 50.169 50.413 -0.048828 29 11 3 0 0 0 0.54555 1 27202 27202 30.637 0.41173 1 4313800 29590 1978 19580 19960 34912 34912 0.09500136316603403 KYLLQEQLK 9 Unmodified _KYLLQEQLK_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;ENST00000587552.5_1_19:5696605-5708411:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2330017089844 3 388.23253 1161.67576 NaN NaN NaN NaN NaN NaN NaN 33.561 1 33.59 33.09 34.09 0.028934 0 0 0 0.84385 1 17662 17662 2.2828 1.2113 1 29591 9804 19581 19961 34913 34913 0.10138847091252501 KYLLTPVNF 9 Unmodified _KYLLTPVNF_ 0 0 0 ENSG00000118655|ENST00000650450|DCLRE1B ENSG00000118655|ENST00000650450|DCLRE1B ENSG00000118655|ENST00000650450|DCLRE1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8174438476562 2 547.815867 1093.61718 0.60695 0.0003325 3.3005 0.0018081 3.9074 0.0021406 547.8175241465998 68.945 0.408 68.97 68.793 69.201 0.025154 49 19 3 0 0 0 0.05447 1 37839 37839 43.858 7.7313 1 10520000 29592 3385 19582 19962 34914 34914 0.07411790516789551 KYLLTPVNFF 10 Unmodified _KYLLTPVNFF_ 0 0 0 ENSG00000118655|ENST00000650450|DCLRE1B ENSG00000118655|ENST00000650450|DCLRE1B ENSG00000118655|ENST00000650450|DCLRE1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.3504028320312 2 621.350074 1240.6856 0.45281 0.00028135 0.70665 0.00043907 1.1595 0.00072043 621.3507009707058 99.582 0.13644 93.406 93.324 93.46 -6.1757 20 8 3 0 0 0 6.7445E-07 1 66353 66353 133.05 74.373 1 46928000 29593 3385 19583 19963 34915 34915 0.07488035096616841 KYLLVPAYI 9 Unmodified _KYLLVPAYI_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3282470703125 2 540.328611 1078.64267 0.22638 0.00012232 1.2465 0.00067354 1.4729 0.00079586 540.3293926556755 75.263 0.24757 75.309 75.183 75.431 0.045959 23 11 3 0 0 0 0.18144 1 41495 41495 34.102 12.356 1 2941600 29594 5126 19584 19964 34916 34916 0.10649265039205602 KYLNENQLSQL 11 Unmodified _KYLNENQLSQL_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.357421875 2 675.356616 1348.69868 0.12114 8.181E-05 1.3268 0.00089604 1.4479 0.00097785 675.3575727148817 46.701 0.23426 46.701 46.565 46.799 0 16 10 2 0 0 0 0.018102 1 25549 25549 55.235 18.16 1 2757200 29595 3712 19585 19965 34917 34917 0.0382782141809912 KYLNIDLFREY 11 Unmodified _KYLNIDLFREY_ 0 0 0 REV__ENSG00000047230|ENST00000359276|CTPS2 REV__ENSG00000047230|ENST00000359276|CTPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.9292602539062 3 491.929398 1472.76637 1.0531 0.00051805 -0.49341 -0.00024272 0.55968 0.00027533 491.92915555867677 52.465 0.31913 52.406 52.248 52.567 -0.058914 63 15 5 0 0 0 0.6889 2 28375 28375;28477 2.4348 0 1 55754000 + 29596 17222 19586 19966 34918;34919 34918 0.048892713488839945 KYLNIDLFREY 11 Unmodified _KYLNIDLFREY_ 0 0 0 REV__ENSG00000047230|ENST00000359276|CTPS2 REV__ENSG00000047230|ENST00000359276|CTPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 737.8931274414062 2 737.390459 1472.76637 0.91463 0.00067444 -1.1088 -0.00081763 -0.19419 -0.00014319 737.8910413927928 74.708 0.56255 68.533 68.328 68.89 -6.1757 38 29 2 0 0 0 0.4178 1 48896 48896 20.581 1.219 1 10300000 + 29597 17222 19586 19966 34920 34920 0.048892713488839945 KYLNIDLFREY 11 Unmodified _KYLNIDLFREY_ 0 0 0 REV__ENSG00000047230|ENST00000359276|CTPS2 REV__ENSG00000047230|ENST00000359276|CTPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.9299926757812 3 491.929398 1472.76637 0.96443 0.00047443 0.24561 0.00012082 1.21 0.00059526 491.9294027323033 74.764 1.0428 68.588 68.02 69.063 -6.1757 78 55 2 0 0 0 0.65108 2 48942 48942;49087 4.4062 0 1 16619000 + 29598 17222 19586 19966 34921;34922 34921 0.048892713488839945 KYLNPFFT 8 Unmodified _KYLNPFFT_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2772216796875 2 515.273835 1028.53312 -0.25645 -0.00013214 2.1045 0.0010844 1.848 0.00095225 515.2777241973463 20.396 0.18833 20.396 20.296 20.485 0 50 30 3 0 0 0 0.28079 1 10239 10239 57.471 10.55 1 6284600 29599 10006 19587 19967 34923 34923 0.01999259419903865 KYLNRQEP 8 Unmodified _KYLNRQEP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2824096679688 2 524.282723 1046.55089 -0.49593 -0.00026001 0.1749 9.17E-05 -0.32103 -0.00016831 524.282884755159 20.233 0.19823 20.262 20.155 20.353 0.028357 27 9 4 0 0 0 0.50673 1 10225 10225 34.102 7.2188 1 3417200 + 29600 17815 19588 19968 34924 34924 0.02947974674748366 KYLNRQEP 8 Unmodified _KYLNRQEP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.282958984375 2 524.282723 1046.55089 0.19743 0.00010351 -0.32113 -0.00016836 -0.1237 -6.4852E-05 524.2825327623038 23.197 0.60108 20.418 20.117 20.718 -2.7784 150 46 4 0 0 0 0.28079 2 12632 12518;12632 57.471 15.632 1 362350000 + 29601 17815 19588 19968 34925;34926 34926 0.02947974674748366 KYLNRQEP 8 Unmodified _KYLNRQEP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.282723 1046.55089 -0.49593 -0.00026001 0.1749 9.17E-05 -0.32103 -0.00016831 524.282884755159 20.233 0.19823 20.262 20.155 20.353 0.028357 -0.062709 0.00037669 NaN 57.471 27 9 4 NaN NaN NaN NaN 0 NaN NaN 0 3417200 + 29602 17815 19588 19968 0.02947974674748366 KYLNRQEP 8 Unmodified _KYLNRQEP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.282723 1046.55089 0.061516 3.2252E-05 0.24816 0.0001301 0.30967 0.00016236 524.2827818410028 20.283 0.181 20.293 20.189 20.37 0.010553 -0.03111 0.00045349 NaN 57.471 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3330200 + 29603 17815 19588 19968 0.02947974674748366 KYLNRQEP 8 Unmodified _KYLNRQEP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 524.282723 1046.55089 0.19743 0.00010351 -0.32113 -0.00016836 -0.1237 -6.4852E-05 524.2825327623038 23.197 0.60108 20.418 20.117 20.718 -2.7784 0.093819 -0.00014344 NaN 57.471 150 46 4 NaN NaN NaN NaN 0 NaN NaN 0 362350000 + 29604 17815 19588 19968 0.02947974674748366 KYLNSVQYI 9 Unmodified _KYLNSVQYI_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3080444335938 2 564.308406 1126.60226 0.73066 0.00041232 -0.62342 -0.0003518 0.10724 6.0517E-05 564.3082653619736 47.995 0.094929 47.642 47.615 47.71 -0.3526 5 4 2 0 0 0 0.08691 1 25763 25763 36.127 14.38 1 2710700 29605 3203 19589 19969 34927 34927 0.04402298648801661 KYLNSVQYI 9 Unmodified _KYLNSVQYI_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.813720703125 2 564.308406 1126.60226 1.2187 0.00068771 0.41238 0.00023271 1.6311 0.00092043 564.810652903008 53.576 0.276 47.772 47.603 47.879 -5.8042 26 17 3 0 0 0 0.011671 1 33846 33846 75.761 35.804 1 40983000 29606 3203 19589 19969 34928 34928 0.04402298648801661 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.289306640625 2 548.289682 1094.56481 0.25901 0.00014201 -0.30657 -0.00016809 -0.047562 -2.6078E-05 548.2893921444909 64.572 0.33788 64.572 64.407 64.745 0 41 16 3 0 0 0 0.15471 1 36054 36054 27.629 8.3718 1 10272000 29607 8835 19590 19970 34929 34929 0.021312073831722955 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2905883789062 2 548.289682 1094.56481 0.28016 0.00015361 0.68731 0.00037685 0.96747 0.00053046 548.289824720184 65.079 0.34542 64.594 64.403 64.749 -0.48428 55 15 5 0 0 0 0.028475 1 35485 35485 56.177 18.203 1 13436000 29608 8835 19590 19970 34930 34930 0.021312073831722955 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS AL20221201_MKP_PDAC_01 4 548.2887573242188 2 548.289682 1094.56481 NaN NaN NaN NaN NaN NaN NaN 81.236 1 75.06 74.56 75.56 -6.1757 0 0 0 0.46232 1 53315 53315 17.113 1.2657 1 29609 8835 19590 19970 34931 34931 0.021312073831722955 KYLPALDEF 9 Unmodified _KYLPALDEF_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.289682 1094.56481 0.75393 0.00041337 1.8161 0.00099578 2.5701 0.0014091 548.2908021866665 64.568 0.25394 64.558 64.432 64.686 -0.010529 -0.016982 0.0015813 NaN 56.177 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2722000 29610 8835 19590 19970 0.021312073831722955 KYLPEWTAW 9 Unmodified _KYLPEWTAW_ 0 0 0 nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.303466796875 2 597.303124 1192.5917 0.8293 0.00049535 0.53364 0.00031874 1.3629 0.00081409 597.303394987951 71.356 0.39441 71.395 71.184 71.579 0.039024 60 17 5 0 0 0 0.08907 2 39331 39228;39331 45.7 21.803 1 36771000 29611 1305 19591 19971 34932;34933 34933 0.0031031599437483237 KYLPEWTAW 9 Unmodified _KYLPEWTAW_ 0 0 0 nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3034057617188 2 597.303124 1192.5917 0.55944 0.00033415 -0.063706 -3.8052E-05 0.49573 0.0002961 597.3029636645261 92.145 0.70368 85.969 85.596 86.299 -6.1757 142 41 4 0 0 0 0.040733 3 60720 60720;60846;60968 62.573 34.944 1 133150000 29612 1305 19591 19971 34934;34935;34936 34934 0.0031031599437483237 KYLPHSAGR 9 Unmodified _KYLPHSAGR_ 0 0 0 ENSG00000083845|ENST00000196551|RPS5;ENST00000598807.1_1_19:58899504-58905010:+|nuORF ENSG00000083845|ENST00000196551|RPS5 ENSG00000083845|ENST00000196551|RPS5 MSMS AL20221201_MKP_PDAC_01 4 514.7835083007812 2 514.785433 1027.55631 NaN NaN NaN NaN NaN NaN NaN 21.306 1 18.571 18.071 19.071 -2.7348 0 0 0 0.58748 1 11398 11398 13.042 0.51092 1 29613 1377 19592 19972 34937 34937 0.04363698257202486 KYLPISHPRF 10 Unmodified _KYLPISHPRF_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MSMS AL20221201_MKP_PDAC_01 4 420.2421264648438 3 419.908269 1256.70298 NaN NaN NaN NaN NaN NaN NaN 77.2 1 71.024 70.524 71.524 -6.1757 0 0 0 0.050526 1 50492 50492 57.204 34.429 1 29614 5970 19593 19973 34938 34938 0.08489375422300327 KYLPVRAQ 8 Unmodified _KYLPVRAQ_ 0 0 0 ENST00000563893.5_1_16:29874131-29874308:-|nuORF;ENST00000562041.1_1_16:29874134-29874242:-|nuORF;ENST00000570016.5_1_16:29873914-29874308:-|nuORF;ENST00000219789.10_1_16:29873914-29874242:-|nuORF ENST00000563893.5_1_16:29874131-29874308:-|nuORF ENST00000563893.5_1_16:29874131-29874308:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.792724609375 2 487.792727 973.5709 0.7013 0.00034209 -0.29749 -0.00014511 0.40381 0.00019698 487.7925528458953 28.193 0.25782 28.147 27.984 28.242 -0.046408 24 9 3 0 0 0 0.75262 1 14596 14596 12.532 0 1 21946000 29615 11025 19594 19974 34939 34939 0.0830577040536582 KYLQAKLTQF 10 Unmodified _KYLQAKLTQF_ 0 0 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1 ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.9079284667969 3 413.908046 1238.70231 0.16583 6.8639E-05 0.28317 0.00011721 0.449 0.00018585 413.90805834425504 42.465 0.22055 42.456 42.318 42.539 -0.0088196 21 9 3 0 0 0 0.11654 1 22710 22710 43.982 31.807 1 17029000 29616 472 19595 19975 34940 34940 0.09250535982596375 KYLQAKLTQF 10 Unmodified _KYLQAKLTQF_ 0 0 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1 ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.35791015625 2 620.358431 1238.70231 0.55961 0.00034716 -0.061009 -3.7847E-05 0.49861 0.00030931 620.3581349461062 42.449 0.15563 42.441 42.36 42.516 -0.0088196 11 6 2 0 0 0 0.05901 1 22742 22742 70.929 49.182 1 4599000 29617 472 19595 19975 34941 34941 0.09250535982596375 KYLQAKLTQF 10 Unmodified _KYLQAKLTQF_ 0 0 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1 ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.9085388183594 3 413.908046 1238.70231 1.448 0.00059932 0.57307 0.0002372 2.021 0.00083652 413.908134404866 47.868 0.33921 42.634 42.435 42.774 -5.2339 46 20 3 0 0 0 0.17253 1 29687 29687 37.075 28.323 1 26319000 29618 472 19595 19975 34942 34942 0.09250535982596375 KYLQAKLTQF 10 Unmodified _KYLQAKLTQF_ 0 0 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1 ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.360107421875 2 620.358431 1238.70231 1.0108 0.00062704 0.39016 0.00024204 1.4009 0.00086908 620.3585749165135 47.882 0.30478 42.648 42.451 42.756 -5.2339 33 18 2 0 0 0 6.0213E-08 1 29712 29712 139.78 107 1 16887000 29619 472 19595 19975 34943 34943 0.09250535982596375 KYLQAVGMF 9 Oxidation (M) _KYLQAVGM(Oxidation (M))F_ KYLQAVGM(1)F KYLQAVGM(74)F 0 0 1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7781372070312 2 536.778428 1071.5423 0.53415 0.00028672 -0.78898 -0.00042351 -0.25484 -0.00013679 536.7779869353861 47.662 0.24521 47.623 47.498 47.743 -0.038643 24 11 3 0 0 0 0.012148 1 25674 25674 74.423 44.198 1 6814000 29620 3658 19596 19976 34944 34944 642 0.00939284713899724 KYLQFVAAL 9 Unmodified _KYLQFVAAL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8115234375 2 526.810585 1051.60662 1.1995 0.0006319 0.15645 8.2419E-05 1.3559 0.00071432 526.8106659244393 70.998 0.33631 71.033 70.915 71.252 0.035515 40 14 4 0 0 0 0.05483 1 39092 39092 57.471 24.686 1 6832300 29621 9805 19597 19977 34945 34945 0.08287807862370755 KYLQFVAAL 9 Unmodified _KYLQFVAAL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.8106689453125 2 526.810585 1051.60662 1.2924 0.00068084 0.50905 0.00026818 1.8014 0.00094901 526.8109308994494 95.422 0.22684 89.246 89.14 89.367 -6.1757 24 12 3 0 0 0 0.036857 1 63180 63180 67.344 2.1088 1 22234000 29622 9805 19597 19977 34946 34946 0.08287807862370755 KYLQLTRNSF 10 Unmodified _KYLQLTRNSF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.9036254882812 3 423.903183 1268.68772 0.24679 0.00010462 1.198 0.00050782 1.4448 0.00061244 423.90343532717156 40.979 0.18195 40.977 40.871 41.053 -0.0017929 18 8 3 0 0 0 0.17804 1 21864 21864 36.395 23.522 1 3920000 29623 7184 19598 19978 34947 34947 0.06412463834453774 KYLQQVNH 8 Unmodified _KYLQQVNH_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.27734375 2 515.277441 1028.54033 0.079125 4.0771E-05 -0.77302 -0.00039832 -0.69389 -0.00035755 515.2774298131558 23.191 0.36516 20.413 20.232 20.597 -2.7784 43 32 2 0 0 0 0.31612 1 12565 12565 53.576 11.481 1 33633000 29624 10194 19599 19979 34948 34948 0.027199920203202055 KYLQQVNHKL 10 Unmodified _KYLQQVNHKL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MSMS AL20221201_MKP_PDAC_01 4 424.2468566894531 3 424.247062 1269.71936 NaN NaN NaN NaN NaN NaN NaN 23.848 1 21.021 20.521 21.521 -2.8273 0 0 0 0.32543 1 12934 12934 35.612 15.986 1 29625 10194 19600 19980 34949 34949 0.09528456588395784 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7955932617188 2 543.795132 1085.57571 0.14642 7.9621E-05 0.2845 0.00015471 0.43092 0.00023433 543.7952087338192 53.204 0.36881 52.753 52.574 52.943 -0.45173 61 18 4 0 0 0 0.0086722 2 28728 28728;28828 88.954 37.324 1 64515000 29626 1745 19601 19981 34950;34951 34950 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7957763671875 2 543.795132 1085.57571 0.49901 0.00027136 0.13743 7.4733E-05 0.63644 0.0003461 543.795124711563 52.835 0.35729 52.772 52.603 52.961 -0.063423 60 17 4 0 0 0 0.0082353 2 28584 28584;28683 96.111 42.278 1 103800000 29627 1745 19601 19981 34952;34953 34952 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.79541015625 2 543.795132 1085.57571 1.167 0.00063461 -0.53178 -0.00028918 0.63521 0.00034542 543.794820545569 59.147 0.50326 53.073 52.756 53.26 -6.0745 99 27 4 0 0 0 0.009483 2 37977 37846;37977 81.89 35.869 1 516390000 29628 1745 19601 19981 34954;34955 34955 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7933959960938 2 543.795132 1085.57571 0.8324 0.00045265 -0.83429 -0.00045368 -0.0018964 -1.0312E-06 543.7945441911244 60.015 0.55922 53.9 53.635 54.194 -6.1147 45 30 2 0 0 0 0.0090948 1 38433 38433 85.272 35.339 1 16113000 29629 1745 19601 19981 34956 34956 0.036346097574551095 KYLQSTISF 9 Unmodified _KYLQSTISF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.797119140625 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 59.591 1 53.477 52.977 53.977 -6.1147 0 0 0 0.010117 1 38273 38273 92.491 36.314 1 29630 1745 19601 19981 34957 34957 0.036346097574551095 KYLQTNIQHF 10 Unmodified _KYLQTNIQHF_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO;ENST00000464156.5_1_2:25038511-25039636:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8885803222656 3 431.2313 1290.67207 -0.23767 -0.00010249 -0.66476 -0.00028667 -0.90244 -0.00038916 431.23063451378164 37.204 0.12305 36.933 36.846 36.969 -0.27133 8 4 2 0 0 0 0.24007 1 19546 19546 0.69767 0.24315 1 884190 29631 5016 19602 19982 34958 34958 0.038361773173846814 KYLQTNIQHF 10 Unmodified _KYLQTNIQHF_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO;ENST00000464156.5_1_2:25038511-25039636:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883056640625 3 431.2313 1290.67207 -0.13601 -5.8654E-05 0.11356 4.897E-05 -0.022456 -9.6836E-06 431.23133418040123 36.804 0.11291 36.826 36.791 36.904 0.021545 5 4 2 0 0 0 0.24007 1 19530 19530 0.69767 0 1 937660 29632 5016 19602 19982 34959 34959 0.038361773173846814 KYLQTNIQHF 10 Unmodified _KYLQTNIQHF_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO;ENST00000464156.5_1_2:25038511-25039636:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.8884582519531 3 431.2313 1290.67207 1.8964 0.00081778 -0.5087 -0.00021937 1.3877 0.00059841 431.23104734905877 41.732 0.20682 37.124 37.03 37.237 -4.6079 18 12 2 0 0 0 0.2384 1 25084 25084 5.4027 1.8157 1 3510700 29633 5016 19602 19982 34960 34960 0.038361773173846814 KYLQYNRS 8 Unmodified _KYLQYNRS_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2827758789062 2 536.282723 1070.55089 0.23181 0.00012432 1.3325 0.00071457 1.5643 0.00083889 536.2832722334847 26.022 0.13254 26.049 26.004 26.136 0.026953 9 5 2 0 0 0 0.3408 1 13496 13496 50.855 0.92203 1 3211400 + 29634 17737 19603 19983 34961 34961 0.018439746747390018 KYLRRAEEI 9 Unmodified _KYLRRAEEI_ 0 0 0 nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1;ENST00000555834.5_1_14:75375979-75389943:-|nuORF;nc|ENSG00000198208|Q9Y6S9-2|RPS6KL1;ENSG00000198208|ENST00000557413|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1 nc|ENSG00000198208|Q9Y6S9-4|RPS6KL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.8402099609375 2 589.33803 1176.66151 -0.47709 -0.00028117 -0.01387 -8.1744E-06 -0.49096 -0.00028934 589.3378753216291 19.07 0.10649 19.07 19.004 19.11 0 10 6 2 0 0 0 0.52759 1 9511 9511 8.7454 0 1 1253000 29635 10063 19604 19984 34962 34962 0.0802419466297124 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7908935546875 2 544.790381 1087.56621 0.40863 0.00022262 0.21837 0.00011896 0.627 0.00034158 544.7903503017931 37.022 0.34261 37.022 36.837 37.18 0 47 16 4 0 0 0 0.00085914 2 19622 19622;19732 140.63 79.276 1 34822000 29636 2317 19605 19985 34963;34964 34963 0.025928414719373905 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8637084960938 3 363.529346 1087.56621 0.27051 9.8338E-05 0.15787 5.7389E-05 0.42837 0.00015573 363.5293953432549 37.006 0.32292 37.006 36.878 37.201 0 53 15 5 0 0 0 0.039985 2 19628 19628;19731 38.615 25 1 29592000 29637 2317 19605 19985 34965;34966 34965 0.025928414719373905 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7908325195312 2 544.790381 1087.56621 NaN NaN NaN NaN NaN NaN NaN 37.346 1 37.075 36.575 37.575 -0.27133 0 0 0 0.61214 1 19621 19621 12.241 4.9514 1 29638 2317 19605 19985 34967 34967 0.025928414719373905 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5297241210938 3 363.529346 1087.56621 1.8417 0.0006695 0.21743 7.9041E-05 2.0591 0.00074854 363.5292714506976 41.958 0.64874 37.274 36.86 37.508 -4.6846 141 40 5 0 0 0 0.0082661 2 25308 25168;25308 74.2 46.976 1 103700000 29639 2317 19605 19985 34968;34969 34969 0.025928414719373905 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7907104492188 2 544.790381 1087.56621 1.0529 0.00057359 -0.24289 -0.00013232 0.80998 0.00044127 544.7901497053124 41.967 0.44182 37.283 37.035 37.477 -4.6846 85 27 4 0 0 0 0.00085914 2 25208 25208;25344 140.63 81.954 1 96418000 29640 2317 19605 19985 34970;34971 34970 0.025928414719373905 KYLSDNVHL 9 Unmodified _KYLSDNVHL_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.529346 1087.56621 -0.29573 -0.00010751 -0.81027 -0.00029456 -1.106 -0.00040206 363.52901456329784 36.951 0.14384 36.973 36.904 37.048 0.021545 -0.11137 -0.0010519 NaN 74.2 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 721470 29641 2317 19605 19985 0.025928414719373905 KYLSEWDQW 9 Unmodified _KYLSEWDQW_ 0 0 0 ENSG00000170537|ENST00000304381|TMC7;nc|ENSG00000170537|Q7Z402-2|TMC7;ENST00000568469.5_1_16:18995385-19051723:+|nuORF ENSG00000170537|ENST00000304381|TMC7 ENSG00000170537|ENST00000304381|TMC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7932739257812 2 627.793121 1253.57169 0.41179 0.00025852 -0.43309 -0.00027189 -0.021292 -1.3367E-05 627.7928275337067 62.683 0.14403 62.197 62.1 62.244 -0.48617 8 6 2 0 0 0 0.52067 1 34173 34173 6.2058 3.903 1 1817400 29642 7999 19606 19986 34972 34972 -0.04495479736260677 KYLSGIAHF 9 Unmodified _KYLSGIAHF_ 0 0 0 ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2843017578125 2 518.284734 1034.55492 -0.011114 -5.7604E-06 0.047538 2.4638E-05 0.036424 1.8878E-05 518.2845534907007 43.759 0.37776 43.449 43.185 43.563 -0.31039 31 17 3 0 0 0 0.0004779 1 23291 23291 144.35 102.26 1 64693000 29643 7375 19607 19987 34973 34973 0.03902064168460129 KYLSGIAHF 9 Unmodified _KYLSGIAHF_ 0 0 0 ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.28271484375 2 518.284734 1034.55492 0.4463 0.00023131 -0.60406 -0.00031308 -0.15777 -8.1768E-05 518.2843360075613 43.433 0.45024 43.417 43.144 43.594 -0.015667 58 20 4 0 0 0 0.0086904 2 23227 23227;23322 107.19 65.092 1 343950000 29644 7375 19607 19987 34974;34975 34974 0.03902064168460129 KYLSGIAHF 9 Unmodified _KYLSGIAHF_ 0 0 0 ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2848510742188 2 518.284734 1034.55492 0.88956 0.00046105 -0.12787 -6.6273E-05 0.76169 0.00039477 518.2846562034619 48.671 0.56046 43.275 42.98 43.54 -5.3961 104 33 4 0 0 0 0.008678 3 30239 30239;30367;30496 107.19 73.085 1 775620000 29645 7375 19607 19987 34976;34977;34978 34976 0.03902064168460129 KYLSGIAHF 9 Unmodified _KYLSGIAHF_ 0 0 0 ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2877807617188 2 518.284734 1034.55492 1.4717 0.00076274 3.3105 0.0017158 4.7821 0.0024785 518.2865912595269 63.988 0.4976 57.812 57.765 58.262 -6.1757 39 25 2 0 0 0 0.013323 1 41402 41402 71.134 44.792 1 13348000 29646 7375 19607 19987 34979 34979 0.03902064168460129 KYLSGIAHF 9 Unmodified _KYLSGIAHF_ 0 0 0 ENSG00000165688|ENST00000371717|PMPCA;ENST00000371720.5_1_9:139305120-139310743:+|nuORF ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2839965820312 2 518.284734 1034.55492 0.46169 0.00023929 0.72017 0.00037325 1.1819 0.00061254 518.2847675728723 65.581 1.1366 59.405 59.02 60.156 -6.1757 104 65 2 0 0 0 0.0083938 5 42907 42466;42631;42768;42907;43049 108 65.902 1 34726000 29647 7375 19607 19987 34980;34981;34982;34983;34984 34983 0.03902064168460129 KYLSGLVDKF 10 Unmodified _KYLSGLVDKF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3320922851562 2 585.331882 1168.64921 0.58403 0.00034185 0.67979 0.0003979 1.2638 0.00073975 585.3322336968282 51.923 0.21136 51.864 51.772 51.983 -0.058918 23 9 3 0 0 0 0.010132 1 28112 28112 106.37 62.383 1 4148000 29648 10689 19608 19988 34985 34985 0.07163158199932695 KYLSGLVDKF 10 Unmodified _KYLSGLVDKF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5574645996094 3 390.557013 1168.64921 0.17874 6.9806E-05 1.8791 0.00073389 2.0578 0.0008037 390.5577180749583 51.951 0.25163 51.892 51.731 51.983 -0.058918 25 11 3 0 0 0 0.48629 1 28134 28134 17.049 3.4337 1 2278100 29649 10689 19608 19988 34986 34986 0.07163158199932695 KYLSGLVDKF 10 Unmodified _KYLSGLVDKF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.331882 1168.64921 0.48291 0.00028266 0.75846 0.00044395 1.2414 0.00072661 585.3318500056661 52.245 0.13979 51.811 51.77 51.909 -0.43367 -0.026185 8.2428E-05 NaN 106.37 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 708670 29650 10689 19608 19988 0.07163158199932695 KYLSGLVDKF 10 Unmodified _KYLSGLVDKF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 390.557013 1168.64921 0.6057 0.00023656 0.59957 0.00023417 1.2053 0.00047073 390.5571311091109 52.282 0.16035 51.848 51.749 51.909 -0.43367 -0.021976 -0.0012368 NaN 17.049 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 694420 29651 10689 19608 19988 0.07163158199932695 KYLSHDVV 8 Unmodified _KYLSHDVV_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7604675292969 2 480.761092 959.507631 0.24893 0.00011967 -1.3252 -0.00063711 -1.0763 -0.00051744 480.76093205505424 24.52 0.16559 24.544 24.42 24.586 0.024429 9 6 2 0 0 0 0.42423 1 12662 12662 42.095 4.1206 1 4957800 29652 5202 19609 19989 34987 34987 0.026257848974637454 KYLSIPAVFF 10 Unmodified _KYLSIPAVFF_ 0 0 0 nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4 nc|ENSG00000288705|P35504-2|UGT1A5 nc|ENSG00000288705|P35504-2|UGT1A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8411865234375 2 592.839342 1183.66413 1.6029 0.00095028 0.18005 0.00010674 1.783 0.001057 592.8393863641089 93.011 0.28619 93.034 92.874 93.16 0.022987 22 11 3 0 0 0 0.5543 1 51717 51717 20.415 6.5085 1 1983800 29653 16629 19610 19990 34988 34988 0.07964650067924595 KYLSIPTVFF 10 Unmodified _KYLSIPTVFF_ 0 0 0 nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3 nc|ENSG00000288702|P35503-3|UGT1A3 nc|ENSG00000288702|P35503-3|UGT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8453979492188 2 607.844625 1213.6747 1.4149 0.00086001 -0.16852 -0.00010243 1.2463 0.00075758 607.8442320544895 92.073 0.39603 92.103 91.966 92.362 0.03019 24 14 3 0 0 0 0.060508 1 51221 51221 55.503 21.101 1 4355700 29654 16628 19611 19991 34989 34989 0.07640632722359442 KYLSIPTVFF 10 Unmodified _KYLSIPTVFF_ 0 0 0 nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3 nc|ENSG00000288702|P35503-3|UGT1A3 nc|ENSG00000288702|P35503-3|UGT1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.8451538085938 2 607.844625 1213.6747 0.58073 0.00035299 -1.1501 -0.00069907 -0.56935 -0.00034608 607.8432122406423 99.95 0.19518 93.775 93.703 93.898 -6.1757 20 13 2 0 0 0 0.021614 1 66724 66724 74.2 28.5 1 55868000 29655 16628 19611 19991 34990 34990 0.07640632722359442 KYLSIYQP 8 Unmodified _KYLSIYQP_ 0 0 0 ENST00000295701.9_1_2:219445426-219447752:+|nuORF ENST00000295701.9_1_2:219445426-219447752:+|nuORF ENST00000295701.9_1_2:219445426-219447752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2773742675781 2 506.279118 1010.54368 -0.03285 -1.6631E-05 -1.6172 -0.00081874 -1.65 -0.00083537 506.27804556932756 48.58 0.19511 48.209 48.102 48.297 -0.37172 14 9 2 0 0 0 0.44637 1 26093 26093 39.95 9.3132 1 5704100 29656 11494 19612 19992 34991 34991 0.03883242074323334 KYLSIYQP 8 Unmodified _KYLSIYQP_ 0 0 0 ENST00000295701.9_1_2:219445426-219447752:+|nuORF ENST00000295701.9_1_2:219445426-219447752:+|nuORF ENST00000295701.9_1_2:219445426-219447752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2794799804688 2 506.279118 1010.54368 0.51386 0.00026015 -0.59809 -0.0003028 -0.084231 -4.2645E-05 506.27872303813575 48.316 0.31692 48.277 48.083 48.4 -0.038643 33 15 3 0 0 0 0.4069 1 26022 26022 43.772 16.889 1 5697400 29657 11494 19612 19992 34992 34992 0.03883242074323334 KYLSLSNSF 9 Unmodified _KYLSLSNSF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2802124023438 2 529.779482 1057.54441 0.27323 0.00014475 -1.3346 -0.00070704 -1.0614 -0.00056229 529.779655615936 52.985 0.46328 52.533 52.219 52.682 -0.45173 73 23 4 0 0 0 0.013041 1 28535 28535 71.922 28.064 1 19058000 29658 7184 19613 19993 34993 34993 0.017940367233904908 KYLSLSNSF 9 Unmodified _KYLSLSNSF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7799682617188 2 529.779482 1057.54441 0.74569 0.00039505 -0.41748 -0.00022117 0.32822 0.00017388 529.7794554514558 52.637 0.46078 52.578 52.267 52.728 -0.058918 62 22 3 0 0 0 0.0086209 1 28387 28387 89.401 33.224 1 16793000 29659 7184 19613 19993 34994 34994 0.017940367233904908 KYLSLSNSF 9 Unmodified _KYLSLSNSF_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.784423828125 2 529.779482 1057.54441 1.4592 0.00077304 0.040547 2.1481E-05 1.4997 0.00079452 529.7797680685129 58.815 0.64208 52.74 52.439 53.081 -6.0745 89 35 3 0 0 0 0.13231 1 37575 37575 29.841 2.2118 1 107880000 29660 7184 19613 19993 34995 34995 0.017940367233904908 KYLSSSGEVF 10 Unmodified _KYLSSSGEVF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.78173828125 2 558.782222 1115.54989 1.7471 0.00097627 -0.90871 -0.00050777 0.83842 0.0004685 558.7818135860176 47.711 0.69772 42.477 42.043 42.74 -5.2339 96 41 4 0 0 0 0.047829 3 29471 29471;29605;29744 59.368 29.528 1 66389000 29661 5855 19614 19994 34996;34997;34998 34996 -0.0032628448479954386 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.8292846679688 2 591.829506 1181.64446 0.33674 0.00019929 -0.82483 -0.00048816 -0.48809 -0.00028887 591.8286880023708 59.695 0.57919 59.205 59.007 59.586 -0.49079 81 28 5 0 0 0 0.018732 2 32517 32416;32517 76.825 38.649 1 102560000 29662 4927 19615 19995 34999;35000 35000 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8294067382812 2 591.829506 1181.64446 0.2196 0.00012997 -0.5765 -0.00034119 -0.35691 -0.00021123 591.8290574481831 59.335 0.88791 59.281 59.03 59.918 -0.053062 149 44 6 0 0 0 0.0057332 4 32248 32248;32346;32456;32598 96.367 44.492 1 970570000 29663 4927 19615 19995 35001;35002;35003;35004 35001 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8302612304688 2 591.829506 1181.64446 0.18289 0.00010824 -0.12126 -7.1766E-05 0.061629 3.6474E-05 591.8293722013914 65.632 1.5785 59.456 58.941 60.519 -6.1757 292 91 4 0 0 0 0.0057332 8 43151 42319;42443;42566;42701;42839;42992;43151;43281 96.367 42.534 1 370500000 29664 4927 19615 19995 35005;35006;35007;35008;35009;35010;35011;35012 35011 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8307495117188 2 591.829506 1181.64446 0.52411 0.00031018 0.46515 0.00027529 0.98926 0.00058547 591.8297156158424 68.159 1.9668 61.984 61.091 63.058 -6.1757 265 113 4 0 0 0 0.0023019 9 44964 44033;44163;44306;44445;44570;44709;44843;44964;45102 106.94 54.672 1 157810000 29665 4927 19615 19995 35013;35014;35015;35016;35017;35018;35019;35020;35021 35020 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.829833984375 2 591.829506 1181.64446 0.90985 0.00053848 -0.082228 -4.8665E-05 0.82762 0.00048981 591.8294046918539 71.309 3.0653 65.133 63.193 66.259 -6.1757 457 164 4 0 0 0 2.255E-05 15 46530 45369;45483;45606;45927;46054;46180;46299;46415;46530;46648;46767;46907;47054;47191;47309 125.53 57.448 1 669690000 29666 4927 19615 19995 35022;35023;35024;35025;35026;35027;35028;35029;35030;35031;35032;35033;35034;35035;35036 35030 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MSMS AL20221201_MKP_PDAC_01 4 591.830810546875 2 591.829506 1181.64446 NaN NaN NaN NaN NaN NaN NaN 67.355 1 61.18 60.68 61.68 -6.1757 0 0 0 0.24492 1 43870 43870 40.239 7.9337 1 29667 4927 19615 19995 35037 35037 0.06090274057191891 KYLSVQGQLF 10 Unmodified _KYLSVQGQLF_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MSMS AL20221201_MKP_PDAC_01 4 591.83154296875 2 591.829506 1181.64446 NaN NaN NaN NaN NaN NaN NaN 69.246 1 63.071 62.571 63.571 -6.1757 0 0 0 0.033371 1 45226 45226 61.602 17.83 1 29668 4927 19615 19995 35038 35038 0.06090274057191891 KYLSVSRGH 9 Unmodified _KYLSVSRGH_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7903442382812 2 523.790715 1045.56688 -0.65435 -0.00034274 0.76638 0.00040143 0.11203 5.868E-05 523.7910146300732 18.946 0.12197 18.969 18.902 19.023 0.023106 16 7 3 0 0 0 0.12424 1 9527 9527 30.637 15.798 1 2018900 + 29669 25125 19616 19996 35039 35039 0.04591680911653384 KYLSVSRGH 9 Unmodified _KYLSVSRGH_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7913208007812 2 523.790715 1045.56688 0.03172 1.6615E-05 -0.11536 -6.0423E-05 -0.083637 -4.3808E-05 523.7909080159906 18.991 0.12655 18.997 18.935 19.061 0.0060463 10 6 2 0 0 0 0.20428 1 9648 9648 22.736 9.6938 1 1871800 + 29670 25125 19616 19996 35040 35040 0.04591680911653384 KYLSVSRGH 9 Unmodified _KYLSVSRGH_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7904663085938 2 523.790715 1045.56688 1.2608 0.00066039 -1.3761 -0.00072081 -0.11535 -6.042E-05 523.7901616048575 21.223 0.32329 18.53 18.339 18.662 -2.693 45 20 3 0 0 0 0.044011 2 11274 11274;11380 47.749 13.347 1 26594000 + 29671 25125 19616 19996 35041;35042 35041 0.04591680911653384 KYLSVSRGH 9 Unmodified _KYLSVSRGH_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.790715 1045.56688 -0.65435 -0.00034274 0.76638 0.00040143 0.11203 5.868E-05 523.7910146300732 18.946 0.12197 18.969 18.902 19.023 0.023106 -0.014016 0.00027526 NaN 30.637 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2018900 + 29672 25125 19616 19996 0.04591680911653384 KYLSVSRGH 9 Unmodified _KYLSVSRGH_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.790715 1045.56688 0.03172 1.6615E-05 -0.11536 -6.0423E-05 -0.083637 -4.3808E-05 523.7909080159906 18.991 0.12655 18.997 18.935 19.061 0.0060463 0.014016 -0.00064844 NaN 30.637 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1871800 + 29673 25125 19616 19996 0.04591680911653384 KYLSVSRGHL 10 Unmodified _KYLSVSRGHL_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2249450683594 3 387.224257 1158.65094 0.020285 7.855E-06 0.68572 0.00026553 0.70601 0.00027338 387.2244647874454 18.988 0.14083 18.994 18.92 19.061 0.0060463 15 7 3 0 0 0 0.62068 1 9638 9638 8.9762 3.6794 1 4162200 + 29674 25125 19617 19997 35043 35043 0.07796212008565817 KYLSVSRGHL 10 Unmodified _KYLSVSRGHL_ 0 0 0 REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF REV__ENST00000269391.10_2_17:74140817-74140946:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2254028320312 3 387.224257 1158.65094 1.5684 0.00060731 -0.54043 -0.00020927 1.0279 0.00039804 387.22389619726187 21.225 0.36099 18.532 18.321 18.682 -2.693 60 23 4 0 0 0 0.62068 1 11267 11267 8.9762 1.0308 1 49580000 + 29675 25125 19617 19997 35044 35044 0.07796212008565817 KYLTAASYL 9 Unmodified _KYLTAASYL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.28466796875 2 515.2844 1028.55425 -0.0082657 -4.2592E-06 -0.49808 -0.00025665 -0.50635 -0.00026091 515.2847495225068 51.207 0.29295 50.793 50.619 50.912 -0.41351 24 14 3 0 0 0 0.039985 1 27584 27584 49.933 6.0747 1 3956400 29676 9454 19618 19998 35045 35045 0.04111224728740126 KYLTAASYL 9 Unmodified _KYLTAASYL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MSMS AL20221201_MKP_PDAC_01 4 515.2833251953125 2 515.2844 1028.55425 NaN NaN NaN NaN NaN NaN NaN 56.83 1 50.853 50.353 51.353 -5.9769 0 0 0 0.10759 1 36297 36297 41.84 5.7126 1 29677 9454 19618 19998 35046 35046 0.04111224728740126 KYLTAEAFGF 10 Unmodified _KYLTAEAFGF_ 0 0 0 ENSG00000075618|ENST00000382361|FSCN1 ENSG00000075618|ENST00000382361|FSCN1 ENSG00000075618|ENST00000382361|FSCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7975463867188 2 573.795132 1145.57571 0.55467 0.00031827 0.18709 0.00010735 0.74176 0.00042562 573.7967006676151 68.39 0.19888 68.415 68.3 68.499 0.025154 16 9 2 0 0 0 0.32072 1 37585 37585 26.268 12.362 1 2053900 29678 1162 19619 19999 35047 35047 0.008746097574658052 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.3359985351562 2 606.337164 1210.65977 -0.10246 -6.2125E-05 -0.39758 -0.00024106 -0.50003 -0.00030319 606.3364469686447 76.162 0.22717 76.162 76.021 76.248 0 19 9 3 0 0 0 0.5933 1 42360 42360 11.495 5.7629 1 949170 29679 1350 19620 20000 35048 35048 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.336669921875 2 606.337164 1210.65977 -0.00244 -1.4795E-06 -0.84649 -0.00051326 -0.84893 -0.00051474 606.3365638685849 76.555 0.46394 76.076 75.858 76.322 -0.47945 107 28 5 0 0 0 0.03037 2 41951 41838;41951 67.838 35.052 1 66191000 29680 1350 19620 20000 35049;35050 35050 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3369140625 2 606.337164 1210.65977 0.2048 0.00012418 -0.44231 -0.00026819 -0.23751 -0.00014401 606.3366658030191 76.024 0.50597 76.072 75.82 76.326 0.047943 67 21 5 0 0 0 0.021614 2 41960 41855;41960 74.2 34.25 1 159920000 29681 1350 19620 20000 35051;35052 35052 0.06287140854374229 KYLTEGLLQF 10 Unmodified _KYLTEGLLQF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.33740234375 2 606.337164 1210.65977 0.80817 0.00049003 -0.23437 -0.00014211 0.57381 0.00034792 606.3368918722734 96.173 0.43506 89.998 89.785 90.22 -6.1757 92 26 5 0 0 0 0.021614 2 63783 63659;63783 74.2 36.553 1 1164700000 29682 1350 19620 20000 35053;35054 35054 0.06287140854374229 KYLTGRGE 8 Unmodified _KYLTGRGE_ 0 0 0 REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5 REV__nc|ENSG00000052126|Q9HAU0-8|PLEKHA5 MSMS AL20221201_MKP_PDAC_01 4 462.2519226074219 2 462.250892 922.48723 NaN NaN NaN NaN NaN NaN NaN 53.232 1 47.428 46.928 47.928 -5.8042 0 0 0 0.5695 1 33620 33620 36.127 0 1 + 29683 17269 19621 20001 35055 35055 0.02288614237670572 KYLTQHERI 9 Unmodified _KYLTQHERI_ 0 0 0 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5578308105469 3 396.555895 1186.64586 -0.57103 -0.00022645 1.2708 0.00050393 0.69973 0.00027748 396.5564383715164 18.314 0.081379 18.314 18.28 18.361 0 34 13 3 0 0 0 0.29507 1 9091 9091 12.856 6.2256 1 1488300 29684 5421 19622 20002 35056 35056 0.059999081459409354 KYLTQHERI 9 Unmodified _KYLTQHERI_ 0 0 0 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.5558471679688 3 396.555895 1186.64586 -0.53197 -0.00021095 0.51007 0.00020227 -0.021898 -8.6836E-06 396.5561504117446 18.167 0.063087 18.181 18.147 18.21 0.013865 13 7 2 0 0 0 0.54213 1 9081 9081 8.4443 5.4491 1 660790 29685 5421 19622 20002 35057 35057 0.059999081459409354 KYLTQHERI 9 Unmodified _KYLTQHERI_ 0 0 0 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5560607910156 3 396.555895 1186.64586 1.2836 0.00050902 0.11696 4.638E-05 1.4006 0.0005554 396.55598158484986 20.092 0.30499 17.435 17.257 17.562 -2.6564 62 20 4 0 0 0 0.076472 2 10748 10642;10748 30.431 24.197 1 19153000 29686 5421 19622 20002 35058;35059 35059 0.059999081459409354 KYLTQVDILL 10 Unmodified _KYLTQVDILL_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3614501953125 2 603.360639 1204.70673 0.77279 0.00046627 0.87503 0.00052796 1.6478 0.00099423 603.3611565221387 96.709 0.28883 90.533 90.404 90.693 -6.1757 39 16 3 0 0 0 0.01105 1 64072 64072 89.401 37.771 1 48149000 29687 3713 19623 20003 35060 35060 0.11256000405523992 KYLTSDIEKLC 11 Unmodified _KYLTSDIEKLC_ 0 0 0 REV__nc|ENSG00000110330|Q13490-2|BIRC2 REV__nc|ENSG00000110330|Q13490-2|BIRC2 MSMS AL20221201_MKP_PDAC_01 4 438.5667724609375 3 438.232089 1311.67444 NaN NaN NaN NaN NaN NaN NaN 52.205 1 46.471 45.971 46.971 -5.7345 0 0 0 0.71214 1 32944 32944 16.275 6.5103 1 + 29688 18704 19624 20004 35061 35061 0.03106844940202791 KYLTSLQLVQF 11 Unmodified _KYLTSLQLVQF_ 0 0 0 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.3848876953125 2 670.384645 1338.75474 0.55404 0.00037142 -0.37004 -0.00024807 0.184 0.00012335 670.3844386359785 78.139 0.35701 78.191 78.011 78.368 0.052452 46 14 4 0 0 0 0.0075717 2 43106 43106;43218 70.929 50.514 1 23374000 29689 7157 19625 20005 35062;35063 35062 0.09891074325537375 KYLTSLQLVQF 11 Unmodified _KYLTSLQLVQF_ 0 0 0 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 ENSG00000164181|ENST00000508821|ELOVL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.384033203125 2 670.384645 1338.75474 1.0667 0.00071512 -0.099315 -6.6579E-05 0.96742 0.00064854 670.3845204800805 97.204 0.34225 91.029 90.861 91.203 -6.1757 56 19 4 0 0 0 1.4363E-11 2 64367 64367;64490 128.58 52.736 1 110460000 29690 7157 19625 20005 35064;35065 35064 0.09891074325537375 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5536193847656 3 381.55338 1141.63831 -0.32382 -0.00012355 0.4591 0.00017517 0.13528 5.1618E-05 381.5534654016982 48.315 0.21964 48.315 48.272 48.491 0 15 10 2 0 0 0 0.5209 1 26527 26527 6.1918 0.40842 1 1639500 29691 6480 19626 20006 35066 35066 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8271484375 2 571.826432 1141.63831 0.5035 0.00028791 -0.58405 -0.00033397 -0.08055 -4.606E-05 571.8263010495211 48.62 0.28777 48.248 48.081 48.369 -0.37172 37 15 3 0 0 0 0.0088823 1 26057 26057 93.938 53.981 1 32103000 29692 6480 19626 20006 35067 35067 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8775329589844 3 381.55338 1141.63831 0.3543 0.00013518 0.13877 5.2947E-05 0.49307 0.00018813 381.55321810725474 48.601 0.26847 48.229 48.081 48.35 -0.37172 32 14 3 0 0 0 0.052231 2 26141 26071;26141 44.392 26.019 1 23481000 29693 6480 19626 20006 35068;35069 35069 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.825927734375 2 571.826432 1141.63831 0.33334 0.00019061 -0.23096 -0.00013207 0.10239 5.8548E-05 571.8261694034775 48.316 0.35395 48.277 48.066 48.42 -0.038643 43 17 3 0 0 0 0.0093238 2 26116 26015;26116 84.522 51.594 1 27568000 29694 6480 19626 20006 35070;35071 35071 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.553955078125 3 381.55338 1141.63831 0.33948 0.00012953 -2.3185 -0.00088465 -1.9791 -0.00075512 381.5518278642164 48.316 0.67452 48.277 48.102 48.777 -0.038643 53 33 3 0 0 0 0.044042 1 26024 26024 47.732 30.289 1 18673000 29695 6480 19626 20006 35072 35072 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5535888671875 3 381.55338 1141.63831 1.6763 0.00063962 -1.1521 -0.00043957 0.52428 0.00020004 381.5527234403717 53.851 0.44934 48.047 47.786 48.236 -5.8042 76 27 4 0 0 0 0.037118 2 34146 34008;34146 51.488 34.045 1 66254000 29696 6480 19626 20006 35073;35074 35074 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8270263671875 2 571.826432 1141.63831 1.3283 0.00075955 -0.45118 -0.000258 0.8771 0.00050155 571.8260929524462 53.847 0.38817 48.042 47.831 48.219 -5.8042 63 23 3 0 0 0 0.030186 1 34096 34096 59.368 32.485 1 81788000 29697 6480 19626 20006 35075 35075 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8270263671875 2 571.826432 1141.63831 0.95365 0.00054532 0.29207 0.00016702 1.2457 0.00071234 571.8262290440339 73.15 1.2788 66.974 66.024 67.302 -6.1757 81 64 2 0 0 0 0.0089391 3 47917 47650;47781;47917 114.19 76.212 1 12821000 29698 6480 19626 20006 35076;35077;35078 35078 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5531005859375 3 381.55338 1141.63831 NaN NaN NaN NaN NaN NaN NaN 72.907 1 66.731 66.231 67.231 -6.1757 0 0 0 0.1417 1 47689 47689 37.771 27.621 1 29699 6480 19626 20006 35079 35079 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5541076660156 3 381.55338 1141.63831 NaN NaN NaN NaN NaN NaN NaN 73.094 1 66.918 66.418 67.418 -6.1757 0 0 0 0.1417 1 47808 47808 37.771 27.621 1 29700 6480 19626 20006 35080 35080 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.8269653320312 2 571.826432 1141.63831 NaN NaN NaN NaN NaN NaN NaN 73.483 1 67.307 66.807 67.807 -6.1757 0 0 0 0.0084563 1 48056 48056 93.938 53.988 1 29701 6480 19626 20006 35081 35081 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5538940429688 3 381.55338 1141.63831 NaN NaN NaN NaN NaN NaN NaN 73.948 1 67.772 67.272 68.272 -6.1757 0 0 0 0.1417 1 48349 48349 37.771 24.899 1 29702 6480 19626 20006 35082 35082 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.5545349121094 3 381.55338 1141.63831 NaN NaN NaN NaN NaN NaN NaN 74.143 1 67.967 67.467 68.467 -6.1757 0 0 0 0.046779 1 48475 48475 59.052 41.61 1 29703 6480 19626 20006 35083 35083 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.826432 1141.63831 -0.014844 -8.488E-06 -0.67342 -0.00038508 -0.68826 -0.00039357 571.8261544622337 48.385 0.19891 48.385 48.272 48.47 0 0.14659 -0.00026042 NaN 93.938 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2349800 29704 6480 19626 20006 0.07315755825652559 KYLTVKDYL 9 Unmodified _KYLTVKDYL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.55338 1141.63831 -0.32382 -0.00012355 0.4591 0.00017517 0.13528 5.1618E-05 381.5534654016982 48.315 0.21964 48.315 48.272 48.491 0 0.098168 0.0014079 NaN 51.488 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1639500 29705 6480 19626 20006 0.07315755825652559 KYLTVNKRL 9 Unmodified _KYLTVNKRL_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;nc|ENSG00000123104|Q14571-2|ITPR2;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.905029296875 3 378.904636 1133.69208 0.35008 0.00013265 0.23303 8.8297E-05 0.58311 0.00022094 378.90469648896993 25.75 0.34371 22.799 22.625 22.969 -2.9511 42 21 3 0 0 0 0.0084276 2 14180 14066;14180 91.085 43.353 1 23625000 29706 1673;3680;6083 19627 20007 35084;35085 35085 0.1305797304803491 KYLTVQNTVRF 11 Unmodified _KYLTVQNTVRF_ 0 0 0 ENSG00000123130|ENST00000379303|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9;nc|ENSG00000123130|Q9Y305-3|ACOT9;nc|ENSG00000123130|Q9Y305-2|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.9255065917969 3 456.925988 1367.75613 0.96893 0.00044273 -1.1888 -0.00054318 -0.21983 -0.00010045 457.2598624329352 46.227 0.32363 46.194 45.943 46.267 -0.033417 19 14 2 0 0 0 0.25257 1 24861 24861 29.291 23.423 1 3791800 29707 3682 19628 20008 35086 35086 0.08696708414299792 KYLVIGDLL 9 Unmodified _KYLVIGDLL_ 0 0 0 nc|ENSG00000108639|O43760-2|SYNGR2;ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF nc|ENSG00000108639|O43760-2|SYNGR2 nc|ENSG00000108639|O43760-2|SYNGR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3182373046875 2 517.318243 1032.62193 0.10826 5.6003E-05 -0.1051 -5.4372E-05 0.0031542 1.6317E-06 517.3184006690574 98.823 0.27715 92.648 92.564 92.841 -6.1757 36 20 3 0 0 0 0.018301 1 65590 65590 65.235 25.278 1 154930000 29708 2592 19629 20009 35087 35087 0.10692674659549084 KYLVIGDLLF 10 Unmodified _KYLVIGDLLF_ 0 0 0 nc|ENSG00000108639|O43760-2|SYNGR2;ENSG00000108639|ENST00000225777|SYNGR2;ENST00000591770.1_1_17:76164697-76167257:+|nuORF nc|ENSG00000108639|O43760-2|SYNGR2 nc|ENSG00000108639|O43760-2|SYNGR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8538208007812 2 590.85245 1179.69035 1.1011 0.00065061 -0.48778 -0.00028821 0.61336 0.00036241 590.8520293154065 100.76 0.14816 94.582 94.503 94.651 -6.1757 47 10 6 0 0 0 0.11824 2 67425 67406;67425 43.772 10.987 1 2892900000 29709 2592 19630 20010 35088;35089 35089 0.1076891923939911 KYLVLANML 9 Oxidation (M) _KYLVLANM(Oxidation (M))L_ KYLVLANM(1)L KYLVLANM(75)L 0 0 1 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2 nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8102416992188 2 540.809728 1079.6049 0.76689 0.00041474 -0.32037 -0.00017326 0.44652 0.00024148 540.8098249876161 57.462 0.41413 57.396 57.22 57.634 -0.066032 62 20 4 0 0 0 0.011968 2 31220 31220;31320 74.929 49.53 1 25985000 29710 7451 19631 20011 35090;35091 35090 1282 0.06828430782070427 KYLVLANML 9 Oxidation (M) _KYLVLANM(Oxidation (M))L_ 0 0 1 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2 nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.809728 1079.6049 0.20054 0.00010845 0.84877 0.00045902 1.0493 0.00056747 541.3118595399726 57.859 0.26582 57.369 57.247 57.513 -0.48974 -0.013415 0.0010703 NaN 74.929 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1927700 29711 7451 19631 20011 1282 0.06828430782070427 KYLVLANML 9 Unmodified _KYLVLANML_ 0 0 0 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2 nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8119506835938 2 532.81227 1063.60999 0.23995 0.00012785 0.444 0.00023657 0.68395 0.00036442 532.8127403999175 75.217 0.28706 75.263 75.165 75.452 0.045967 33 13 3 0 0 0 0.10734 1 41458 41458 32.305 9.1571 1 5211300 29712 7451 19631 20012 35092 35092 0.08072734644701995 KYLVLANML 9 Unmodified _KYLVLANML_ 0 0 0 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2 nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3141479492188 2 532.81227 1063.60999 1.2055 0.0006423 -0.96213 -0.00051264 0.24335 0.00012966 532.8120570438007 97.128 0.66369 90.952 90.506 91.17 -6.1757 87 38 4 0 0 0 0.03568 2 64299 64299;64418 52.268 18.166 1 93909000 29713 7451 19631 20012 35093;35094 35093 0.08072734644701995 KYLYEEYLQAF 11 Unmodified _KYLYEEYLQAF_ 0 0 0 nc|ENSG00000117528|P28288-3|ABCD3;nc|ENSG00000117528|P28288-2|ABCD3;ENSG00000117528|ENST00000370214|ABCD3 nc|ENSG00000117528|P28288-3|ABCD3 nc|ENSG00000117528|P28288-3|ABCD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 733.8658447265625 2 733.863743 1465.71293 1.1283 0.00082801 0.35783 0.0002626 1.4861 0.0010906 733.8643721868335 96.844 0.21743 90.668 90.523 90.741 -6.1757 20 12 2 0 0 0 0.0008837 1 64173 64173 84.522 56.893 1 11357000 29714 3316 19632 20013 35095 35095 -0.0012952615363701625 KYLYQKIMF 9 Oxidation (M) _KYLYQKIM(Oxidation (M))F_ KYLYQKIM(1)F KYLYQKIM(56)F 0 0 1 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF;ENST00000508165.1_1_4:135249290-135249890:+|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2269592285156 3 417.226499 1248.65767 0.47273 0.00019723 0.2861 0.00011937 0.75883 0.0003166 417.22684351778463 49.35 0.3033 49.307 49.114 49.417 -0.04369 43 14 4 0 0 0 0.029718 1 26628 26628 55.503 41.968 1 10315000 29715 1742 19633 20014 35096 35096 297 0.043283888448968355 KYLYQKIMF 9 Oxidation (M) _KYLYQKIM(Oxidation (M))F_ KYLYQKIM(1)F KYLYQKIM(68)F 0 0 1 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF;ENST00000508165.1_1_4:135249290-135249890:+|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3374633789062 2 625.33611 1248.65767 0.75202 0.00047027 0.73613 0.00046033 1.4882 0.00093059 625.3365582653279 49.334 0.18074 49.29 49.195 49.376 -0.04369 18 8 3 0 0 0 0.015445 1 26644 26644 68.081 54.175 1 2468800 29716 1742 19633 20014 35097 35097 297 0.043283888448968355 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.213623046875 3 397.213246 1188.61791 0.31514 0.00012518 0.01326 5.2672E-06 0.3284 0.00013045 397.2131838590876 38.968 0.24227 38.968 38.834 39.077 0 23 10 3 0 0 0 0.024882 1 20846 20846 45.74 33.565 1 3106100 29717 1800 19634 20015 35098 35098 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3161010742188 2 595.316232 1188.61791 0.054885 3.2674E-05 -0.55803 -0.00033221 -0.50315 -0.00029953 595.3157484327166 39.335 0.26003 39.048 38.904 39.164 -0.28687 36 12 4 0 0 0 0.0061279 1 20714 20714 114.19 64.253 1 36028000 29718 1800 19634 20015 35099 35099 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2159118652344 3 397.213246 1188.61791 -0.0027646 -1.0981E-06 -0.18214 -7.235E-05 -0.18491 -7.3448E-05 397.2131903488255 39.328 0.28133 39.042 38.904 39.185 -0.28687 33 13 4 0 0 0 0.047788 1 20717 20717 35.612 23.385 1 12072000 29719 1800 19634 20015 35100 35100 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3167114257812 2 595.316232 1188.61791 0.072946 4.3426E-05 -0.48046 -0.00028602 -0.40751 -0.0002426 595.3159730878016 38.933 0.28595 38.944 38.82 39.106 0.011456 34 13 3 0 0 0 0.00030554 1 20689 20689 148.27 98.335 1 15009000 29720 1800 19634 20015 35101 35101 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2133178710938 3 397.213246 1188.61791 0.063107 2.5067E-05 -0.2539 -0.00010085 -0.19079 -7.5785E-05 397.2130795321498 38.938 0.24343 38.95 38.82 39.063 0.011456 27 11 3 0 0 0 0.047788 1 20699 20699 35.612 22.74 1 6123500 29721 1800 19634 20015 35102 35102 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2136535644531 3 397.213246 1188.61791 0.73138 0.00029051 0.78875 0.0003133 1.5201 0.00060382 397.213509065673 43.9 0.56064 39.135 38.791 39.351 -4.7648 130 35 5 0 0 0 0.015445 3 26716 26586;26716;26852 53.404 38.999 1 163810000 29722 1800 19634 20015 35103;35104;35105 35104 0.031145851658493484 KYLYVDKNF 9 Unmodified _KYLYVDKNF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3195190429688 2 595.316232 1188.61791 0.20894 0.00012439 0.58552 0.00034857 0.79446 0.00047295 595.316356347942 43.9 0.49173 39.135 38.874 39.366 -4.7648 101 31 4 0 0 0 0.0047912 2 26589 26589;26728 117.84 75.998 1 171820000 29723 1800 19634 20015 35106;35107 35106 0.031145851658493484 KYMAEALLL 9 Unmodified _KYMAEALLL_ 0 0 0 ENST00000492171.1_1_3:100096542-100100595:-|nuORF;ENSG00000154174|ENST00000284320|TOMM70 ENST00000492171.1_1_3:100096542-100100595:-|nuORF ENST00000492171.1_1_3:100096542-100100595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.29638671875 2 526.296453 1050.57835 0.18055 9.5025E-05 1.2862 0.0006769 1.4667 0.00077193 526.297068562621 68.804 0.28349 68.323 68.202 68.485 -0.48071 35 12 4 0 0 0 0.10247 1 37597 37597 32.786 2.9451 1 8156400 29724 6302 19635 20016 35108 35108 0.055087418907760366 KYMAEALLL 9 Unmodified _KYMAEALLL_ 0 0 0 ENST00000492171.1_1_3:100096542-100100595:-|nuORF;ENSG00000154174|ENST00000284320|TOMM70 ENST00000492171.1_1_3:100096542-100100595:-|nuORF ENST00000492171.1_1_3:100096542-100100595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2974853515625 2 526.296453 1050.57835 1.0415 0.00054814 -0.84571 -0.00044509 0.1958 0.00010305 526.2967819892281 91.024 1.4337 84.848 83.968 85.401 -6.1757 204 83 3 0 0 0 0.094149 3 60021 59769;59898;60021 34.402 7.5181 1 66503000 29725 6302 19635 20016 35109;35110;35111 35111 0.055087418907760366 KYMAEALLL 9 Unmodified _KYMAEALLL_ 0 0 0 ENST00000492171.1_1_3:100096542-100100595:-|nuORF;ENSG00000154174|ENST00000284320|TOMM70 ENST00000492171.1_1_3:100096542-100100595:-|nuORF ENST00000492171.1_1_3:100096542-100100595:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 526.296453 1050.57835 0.46706 0.00024581 3.2252 0.0016974 3.6923 0.0019432 526.2980591962443 68.334 0.19718 68.359 68.282 68.479 0.025146 0.018015 0.0016466 NaN 32.786 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1652200 29726 6302 19635 20016 0.055087418907760366 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(66)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2679443359375 2 612.26809 1222.52163 0.33539 0.00020535 -0.35263 -0.00021591 -0.017238 -1.0554E-05 612.2679674338505 66.22 0.80266 66.22 65.898 66.701 0 154 37 6 0 0 0 0.017075 2 36896 36896;37002 66.457 41.057 1 156020000 29727 4081;7542 19636 20017 35112;35113 35112 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(66)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7720947265625 2 612.26809 1222.52163 0.32534 0.0001992 -0.11537 -7.0638E-05 0.20997 0.00012856 612.268077406469 66.789 0.64465 66.306 65.946 66.59 -0.48324 124 30 6 0 0 0 0.017075 3 36331 36331;36435;36539 66.457 47.2 1 107540000 29728 4081;7542 19636 20017 35114;35115;35116 35114 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(50)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2684326171875 2 612.26809 1222.52163 1.2707 0.00077803 0.21675 0.00013271 1.4875 0.00091074 612.2683209609754 66.25 0.50647 66.259 65.973 66.48 0.0095673 86 25 4 0 0 0 0.040683 1 36341 36341 49.554 21.067 1 29090000 29729 4081;7542 19636 20017 35117 35117 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(44)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2681274414062 2 612.26809 1222.52163 1.0164 0.00062231 -0.26179 -0.00016029 0.75461 0.00046202 612.2672171888192 71.792 0.39828 65.616 65.462 65.86 -6.1757 33 22 2 0 0 0 0.05483 1 46880 46880 43.772 7.7282 1 23583000 29730 4081;7542 19636 20017 35118 35118 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(69)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2694702148438 2 612.26809 1222.52163 0.78801 0.00048247 0.58155 0.00035606 1.3696 0.00083853 612.2683429828318 72.842 0.24801 66.666 66.486 66.734 -6.1757 19 12 2 0 0 0 0.014417 1 47608 47608 69.105 30.929 1 15807000 29731 4081;7542 19636 20017 35119 35119 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(73)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.26904296875 2 612.26809 1222.52163 0.78374 0.00047986 -0.25897 -0.00015856 0.52477 0.0003213 612.268155922604 73.44 1.4168 67.265 66.699 68.116 -6.1757 193 70 4 0 0 0 0.012668 7 47851 47732;47851;47959;48075;48189;48422;48534 72.968 40.662 1 87734000 29732 4081;7542 19636 20017 35120;35121;35122;35123;35124;35125;35126 35121 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ KYM(1)DIEFDF KYM(60)DIEFDF 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.268310546875 2 612.26809 1222.52163 0.93289 0.00057118 0.27222 0.00016667 1.2051 0.00073785 612.2682622660744 74.535 1.1818 68.359 67.977 69.159 -6.1757 115 62 2 0 0 0 0.023481 4 49023 48653;48777;48902;49023 60.074 33.701 1 59553000 29733 4081;7542 19636 20017 35127;35128;35129;35130 35130 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 612.26809 1222.52163 0.42776 0.0002619 -1.2068 -0.0007389 -0.77907 -0.000477 612.2669010517496 66.768 0.13655 66.768 66.658 66.795 0 0.050725 -0.0016467 NaN 69.105 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 800910 29734 4081;7542 19636 20017 728 -0.08073350456425032 KYMDIEFDF 9 Oxidation (M) _KYM(Oxidation (M))DIEFDF_ 0 0 1 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 612.26809 1222.52163 0.82445 0.00050478 0.00089924 5.5058E-07 0.82535 0.00050534 612.7699127858386 72.627 0.17107 66.451 66.351 66.522 -6.1757 0.14223 0.00014423 NaN 66.457 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 7013800 29735 4081;7542 19636 20017 728 -0.08073350456425032 KYMDIEFDF 9 Unmodified _KYMDIEFDF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7723388671875 2 604.270632 1206.52671 -0.1227 -7.4144E-05 -0.4557 -0.00027536 -0.5784 -0.00034951 604.2704156559174 77.38 0.1819 77.38 77.29 77.472 0 14 11 2 0 0 0 0.1685 1 43006 43006 26.268 12.362 1 1758800 29736 4081;7542 19636 20018 35131 35131 -0.06829046593793464 KYMDIEFDF 9 Unmodified _KYMDIEFDF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2698364257812 2 604.270632 1206.52671 -0.89093 -0.00053837 -0.032166 -1.9437E-05 -0.9231 -0.0005578 604.270488466201 77.872 0.28377 77.39 77.189 77.473 -0.4826 30 18 2 0 0 0 0.047788 1 42584 42584 45.7 34.876 1 5102000 29737 4081;7542 19636 20018 35132 35132 -0.06829046593793464 KYMDIEFDF 9 Unmodified _KYMDIEFDF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2694091796875 2 604.270632 1206.52671 NaN NaN NaN NaN NaN NaN NaN 78.004 1 77.521 77.021 78.021 -0.4826 0 0 0 0.39118 1 42719 42719 20.415 10.341 1 29738 4081;7542 19636 20018 35133 35133 -0.06829046593793464 KYMDIEFDF 9 Unmodified _KYMDIEFDF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.2708129882812 2 604.270632 1206.52671 0.052975 3.2011E-05 -0.18513 -0.00011187 -0.13216 -7.9858E-05 604.2706406293903 77.303 0.45581 77.353 77.149 77.605 0.05011 56 18 4 0 0 0 0.017075 2 42616 42616;42723 66.457 47.2 1 15252000 29739 4081;7542 19636 20018 35134;35135 35134 -0.06829046593793464 KYMDIEFDF 9 Unmodified _KYMDIEFDF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B;ENSG00000166866|ENST00000300119|MYO1A ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.2711791992188 2 604.270632 1206.52671 0.71954 0.0004348 -0.27422 -0.0001657 0.44532 0.0002691 604.2704943386697 95.302 0.87346 89.126 88.711 89.584 -6.1757 175 50 4 0 0 0 0.014417 4 63028 62910;63028;63152;63281 69.105 43.706 1 695800000 29740 4081;7542 19636 20018 35136;35137;35138;35139 35137 -0.06829046593793464 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(58)DINFDF 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7680053710938 2 604.768257 1207.52196 -0.1215 -7.3476E-05 -0.6887 -0.0004165 -0.81019 -0.00048998 604.7679542358092 63.329 0.81226 63.329 62.92 63.732 0 138 38 5 0 0 0 0.025842 2 35261 35159;35261 57.722 12.022 1 157170000 29741 8612;4813 19637 20019 35140;35141 35141 871 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(58)DINFDF 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.7681884765625 2 604.768257 1207.52196 0.39222 0.0002372 -1.2713 -0.00076886 -0.8791 -0.00053165 604.7676189532247 63.83 1.0215 63.344 62.886 63.908 -0.48512 168 50 6 0 0 0 0.025842 2 34636 34636;34738 57.722 19.546 1 258670000 29742 8612;4813 19637 20019 35142;35143 35142 871 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(86)DINFDF 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.7687377929688 2 604.768257 1207.52196 0.43242 0.00026151 -0.36329 -0.0002197 0.069134 4.181E-05 604.7680489973862 63.391 0.56985 63.369 63.029 63.599 -0.021614 93 28 4 0 0 0 0.0090524 3 34543 34543;34658;34760 85.642 13.719 1 47067000 29743 8612;4813 19637 20019 35144;35145;35146 35144 871 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(58)DINFDF 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7686767578125 2 604.768257 1207.52196 0.50388 0.00030473 -0.22048 -0.00013334 0.28341 0.0001714 604.7684576870136 68.945 1.3427 62.769 62.306 63.648 -6.1757 214 74 4 0 0 0 0.025842 4 45076 44958;45076;45327;45464 57.722 12.022 1 219750000 29744 8612;4813 19637 20019 35147;35148;35149;35150 35148 871 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ KYM(1)DINFDF KYM(66)DINFDF 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7679443359375 2 604.768257 1207.52196 0.55986 0.00033859 -1.4156 -0.00085614 -0.85578 -0.00051755 604.7682626181384 70.751 1.4318 64.575 63.811 65.243 -6.1757 172 76 3 0 0 0 0.017075 6 45773 45773;45902;46152;46274;46389;46506 66.457 16.902 1 230340000 29745 8612;4813 19637 20019 35151;35152;35153;35154;35155;35156 35151 871 -0.07349930736563692 KYMDINFDF 9 Oxidation (M) _KYM(Oxidation (M))DINFDF_ 0 0 1 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 604.768257 1207.52196 0.37274 0.00022542 -0.37987 -0.00022974 -0.0071388 -4.3173E-06 604.7682261815595 63.125 0.12693 62.638 62.583 62.709 -0.48617 -0.065227 -0.0001871 NaN 57.722 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 601820 29746 8612;4813 19637 20019 871 -0.07349930736563692 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7715454101562 2 596.7708 1191.52705 0.20914 0.00012481 0.20508 0.00012239 0.41421 0.00024719 596.7706989843035 74.832 0.27144 74.832 74.693 74.965 0 19 13 2 0 0 0 0.10247 1 41615 41615 32.786 3.7041 1 1067800 29747 8612;4813 19637 20020 35157 35157 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7706909179688 2 596.7708 1191.52705 0.80474 0.00048024 -1.5321 -0.00091432 -0.72737 -0.00043408 596.770117183033 75.285 0.45882 74.808 74.538 74.997 -0.47714 71 23 5 0 0 0 0.040683 2 41171 41171;41272 49.554 11.379 1 25976000 29748 8612;4813 19637 20020 35158;35159 35158 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7714233398438 2 596.7708 1191.52705 0.11943 7.1274E-05 0.27621 0.00016483 0.39564 0.00023611 596.7711257892947 74.76 0.36598 74.806 74.595 74.961 0.045967 62 16 5 0 0 0 0.01958 2 41235 41135;41235 63.961 12.331 1 28156000 29749 8612;4813 19637 20020 35160;35161 35161 -0.06105626873932124 KYMDINFDF 9 Unmodified _KYMDINFDF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-4|MYO1G ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.770751953125 2 596.7708 1191.52705 0.11511 6.8697E-05 0.14069 8.3958E-05 0.2558 0.00015265 596.7708395032457 92.721 1.0496 86.546 86.083 87.133 -6.1757 274 68 6 0 0 0 0.011671 4 61314 61187;61314;61441;61568 75.761 13.188 1 1130200000 29750 8612;4813 19637 20020 35162;35163;35164;35165 35163 -0.06105626873932124 KYMDVQFDF 9 Unmodified _KYMDVQFDF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7716674804688 2 596.7708 1191.52705 0.17327 0.00010341 0.96104 0.00057352 1.1343 0.00067693 596.7713160008323 68.381 0.40088 68.381 68.184 68.585 0 57 18 4 0 0 0 0.047788 2 38158 38059;38158 45.7 3.86 1 4684300 29751 10015 19638 20021 35166;35167 35167 -0.06105626873932124 KYMDVQFDF 9 Unmodified _KYMDVQFDF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7705078125 2 596.7708 1191.52705 0.31219 0.00018631 -0.44387 -0.00026489 -0.13168 -7.858E-05 596.7706873867933 68.888 0.53912 68.407 68.18 68.719 -0.48071 82 23 5 0 0 0 0.017075 2 37686 37583;37686 66.457 12.624 1 38106000 29752 10015 19638 20021 35168;35169 35169 -0.06105626873932124 KYMDVQFDF 9 Unmodified _KYMDVQFDF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7699584960938 2 596.7708 1191.52705 0.36644 0.00021868 0.41582 0.00024815 0.78226 0.00046683 596.7712125063304 68.365 0.35909 68.39 68.223 68.582 0.025154 64 17 5 0 0 0 0.0094097 2 37510 37510;37614 82.529 13.424 1 27000000 29753 10015 19638 20021 35170;35171 35170 -0.06105626873932124 KYMDVQFDF 9 Unmodified _KYMDVQFDF_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7709350585938 2 596.7708 1191.52705 0.22932 0.00013685 -0.39962 -0.00023848 -0.17031 -0.00010163 596.7707832075837 81.926 2.5178 75.75 74.827 77.345 -6.1757 490 141 5 0 0 0 0.0082475 12 53946 53328;53456;53580;53704;53824;53946;54064;54188;54319;54456;54594;54741 92.653 26.258 1 707150000 29754 10015 19638 20021 35172;35173;35174;35175;35176;35177;35178;35179;35180;35181;35182;35183 35177 -0.06105626873932124 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(64)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.767822265625 2 604.768257 1207.52196 0.2519 0.00015234 -1.0035 -0.00060691 -0.75164 -0.00045457 604.7677396026985 58.194 0.64101 57.704 57.43 58.071 -0.48974 121 30 6 0 0 0 0.01958 2 31631 31631;31737 63.961 12.331 1 392990000 29755 10015 19638 20022 35184;35185 35184 1626 -0.07349930736563692 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(69)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.7685546875 2 604.768257 1207.52196 0.77055 0.000466 -0.5154 -0.0003117 0.25515 0.00015431 604.7680341906924 57.905 0.45917 57.839 57.573 58.033 -0.066036 91 22 5 0 0 0 0.014417 2 31541 31441;31541 69.105 12.928 1 61505000 29756 10015 19638 20022 35186;35187 35187 1626 -0.07349930736563692 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(56)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20221201_MKP_PDAC_01 4 604.7686767578125 2 604.768257 1207.52196 NaN NaN NaN NaN NaN NaN NaN 63.477 1 57.301 56.801 57.801 -6.1757 0 0 0 0.053277 1 41042 41042 56.177 12.319 1 29757 10015 19638 20022 35188 35188 1626 -0.07349930736563692 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(76)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20221201_MKP_PDAC_01 4 604.7685546875 2 604.768257 1207.52196 NaN NaN NaN NaN NaN NaN NaN 63.656 1 57.48 56.98 57.98 -6.1757 0 0 0 0.02218 1 41175 41175 75.761 13.188 1 29758 10015 19638 20022 35189 35189 1626 -0.07349930736563692 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(69)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20221201_MKP_PDAC_01 4 604.7686767578125 2 604.768257 1207.52196 NaN NaN NaN NaN NaN NaN NaN 63.84 1 57.665 57.165 58.165 -6.1757 0 0 0 0.027645 1 41308 41308 69.105 12.928 1 29759 10015 19638 20022 35190 35190 1626 -0.07349930736563692 KYMDVQFDF 9 Oxidation (M) _KYM(Oxidation (M))DVQFDF_ KYM(1)DVQFDF KYM(50)DVQFDF 0 0 1 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20221201_MKP_PDAC_01 4 604.768798828125 2 604.768257 1207.52196 NaN NaN NaN NaN NaN NaN NaN 64.032 1 57.856 57.356 58.356 -6.1757 0 0 0 0.076083 1 41450 41450 49.554 11.379 1 29760 10015 19638 20022 35191 35191 1626 -0.07349930736563692 KYMDVVKERI 10 Oxidation (M) _KYM(Oxidation (M))DVVKERI_ KYM(1)DVVKERI KYM(99)DVVKERI 0 0 1 ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2384948730469 3 432.904196 1295.69076 0.83491 0.00036143 0.012063 5.222E-06 0.84697 0.00036666 433.2384287713916 28.994 0.37397 25.692 25.457 25.831 -3.3016 21 20 2 0 0 0 0.0049786 1 16200 16200 98.634 75.618 1 91690000 29761 1536 19639 20023 35192 35192 259 0.05473970896969149 KYMDVVKERI 10 Unmodified _KYMDVVKERI_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.573486328125 3 427.572557 1279.69584 1.0509 0.00044935 -0.11957 -5.1126E-05 0.93136 0.00039822 427.57257643594386 39.144 0.4238 34.693 34.506 34.929 -4.4509 87 26 4 0 0 0 0.025206 2 23106 23106;23245 55.839 45.523 1 101020000 29762 1536 19639 20024 35193;35194 35193 0.0671827475957798 KYMDVVKERI 10 Unmodified _KYMDVVKERI_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 427.572557 1279.69584 -0.29352 -0.0001255 -0.2332 -9.9709E-05 -0.52672 -0.00022521 427.57235465466715 34.699 0.10118 34.508 34.44 34.541 -0.19131 -0.092813 -0.0001092 NaN 55.839 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2768700 29763 1536 19639 20024 0.0671827475957798 KYMEDVTQI 9 Unmodified _KYMEDVTQI_ 0 0 0 nc|ENSG00000170836|O15297-2|PPM1D;ENSG00000170836|ENST00000305921|PPM1D nc|ENSG00000170836|O15297-2|PPM1D nc|ENSG00000170836|O15297-2|PPM1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7742309570312 2 563.776082 1125.53761 0.90757 0.00051166 -0.29673 -0.00016729 0.61084 0.00034438 563.775171862664 48.234 0.43029 43 42.756 43.186 -5.2339 62 25 3 0 0 0 0.0094802 2 29970 29970;30098 82.529 23.85 1 41193000 29764 8030 19640 20025 35195;35196 35195 -0.02013644219505295 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(44)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.18115234375 3 426.181618 1275.52302 -0.47506 -0.00020246 -1.0774 -0.00045918 -1.5525 -0.00066164 426.18129395022765 26.168 0.4415 26.168 26.026 26.468 0 102 23 6 0 0 0 0.053952 1 13404 13404 43.982 37.358 1 441160000 29765 3399 19641 20026 35197 35197 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(160)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.7677001953125 2 638.768788 1275.52302 -0.54257 -0.00034657 -0.92112 -0.00058838 -1.4637 -0.00093495 638.7683728274939 26.185 0.35934 26.185 26.026 26.386 0 85 19 6 0 0 0 2.2236E-06 2 13405 13405;13503 157.8 119.82 1 258280000 29766 3399 19641 20026 35198;35199 35198 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(88)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.1809387207031 3 426.181618 1275.52302 0.33766 0.00014391 0.10061 4.2876E-05 0.43827 0.00018678 426.51600701633686 26.27 0.18954 26.238 26.15 26.339 -0.031706 21 10 3 0 0 0 0.0087399 1 13491 13491 88.364 76.136 1 20597000 29767 3399 19641 20026 35200 35200 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(140)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.2693481445312 2 638.768788 1275.52302 0.091308 5.8325E-05 0.4746 0.00030316 0.56591 0.00036148 638.76912114653 26.275 0.15773 26.243 26.164 26.321 -0.031708 17 8 3 0 0 0 0.00097698 1 13498 13498 139.78 109.15 1 11342000 29768 3399 19641 20026 35201 35201 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(97)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5159912109375 3 426.181618 1275.52302 0.26323 0.00011218 -0.26457 -0.00011276 -0.0013458 -5.7356E-07 426.181571678347 25.996 0.15262 26.023 25.962 26.115 0.026953 12 6 2 0 0 0 0.0082981 1 13479 13479 96.936 80.661 1 8099900 29769 3399 19641 20026 35202 35202 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(100)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.2694702148438 2 638.768788 1275.52302 0.24664 0.00015754 -0.71692 -0.00045794 -0.47028 -0.0003004 638.7684313633583 26.008 0.15262 26.035 25.962 26.115 0.026951 10 6 2 0 0 0 0.0088231 1 13480 13480 103.82 79.803 1 8456800 29770 3399 19641 20026 35203 35203 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(98)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.181884765625 3 426.181618 1275.52302 0.91219 0.00038876 -0.68921 -0.00029373 0.22297 9.5027E-05 426.18138387504183 28.991 0.42516 25.69 25.438 25.864 -3.3016 76 23 4 0 0 0 0.0083595 2 16112 16112;16230 97.741 85.513 1 466440000 29771 3399 19641 20026 35204;35205 35204 605 -0.10371716367671979 KYMEDYHQF 9 Oxidation (M) _KYM(Oxidation (M))EDYHQF_ KYM(1)EDYHQF KYM(160)EDYHQF 0 0 1 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.7684936523438 2 638.768788 1275.52302 0.53975 0.00034478 -0.74522 -0.00047602 -0.20547 -0.00013125 638.7685129693006 28.986 0.42126 25.684 25.457 25.878 -3.3016 71 23 4 0 0 0 2.6516E-06 2 16138 16138;16265 155.95 109.93 1 329700000 29772 3399 19641 20026 35206;35207 35206 605 -0.10371716367671979 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.8505554199219 3 420.849979 1259.52811 -1.3542 -0.0005699 -0.28497 -0.00011993 -1.6391 -0.00068983 420.84978428250145 32.434 0.21608 32.434 32.297 32.513 0 33 13 3 0 0 0 0.0087873 1 16919 16919 84.522 71.004 1 16256000 29773 3399 19641 20027 35208 35208 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7699584960938 2 630.771331 1259.52811 -1.2319 -0.00077703 -1.1622 -0.00073308 -2.3941 -0.0015101 630.7709972675352 32.432 0.19745 32.432 32.316 32.513 0 26 12 3 0 0 0 0.0061279 1 16928 16928 114.19 81.401 1 13420000 29774 3399 19641 20027 35209 35209 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.1838989257812 3 420.849979 1259.52811 -0.17573 -7.3955E-05 -0.22191 -9.3389E-05 -0.39763 -0.00016734 420.8500024832646 32.485 0.28183 32.356 32.199 32.481 -0.12915 29 12 3 0 0 0 0.012668 1 16910 16910 59.052 55.207 1 5918700 29775 3399 19641 20027 35210 35210 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.7711791992188 2 630.771331 1259.52811 -0.44113 -0.00027825 -0.4126 -0.00026026 -0.85372 -0.0005385 630.7711901701158 32.488 0.21403 32.359 32.245 32.459 -0.12915 23 9 3 0 0 0 0.0048194 1 16911 16911 117.76 81.254 1 4478400 29776 3399 19641 20027 35211 35211 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.273681640625 2 630.771331 1259.52811 -0.081635 -5.1493E-05 -0.12269 -7.7387E-05 -0.20432 -0.00012888 630.7706438166211 32.336 0.16669 32.366 32.299 32.466 0.029743 10 6 2 0 0 0 0.36964 1 16987 16987 13.906 1.6654 1 1642800 29777 3399 19641 20027 35212 35212 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8502807617188 3 420.849979 1259.52811 -0.18757 -7.8938E-05 0.2138 8.9977E-05 0.02623 1.1039E-05 420.8502226185382 32.368 0.21392 32.397 32.279 32.492 0.029743 15 8 2 0 0 0 0.49272 1 17004 17004 4.897 3.7873 1 2026200 29778 3399 19641 20027 35213 35213 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.771728515625 2 630.771331 1259.52811 0.50172 0.00031647 -0.41293 -0.00026046 0.088795 5.6009E-05 630.7712303265718 36.616 0.58796 32.333 32.077 32.665 -4.2835 142 36 5 0 0 0 6.1213E-15 3 21546 21297;21421;21546 184.36 128.18 1 432030000 29779 3399 19641 20027 35214;35215;35216 35216 -0.09127412505040411 KYMEDYHQF 9 Unmodified _KYMEDYHQF_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8502807617188 3 420.849979 1259.52811 0.98172 0.00041316 -0.36705 -0.00015447 0.61468 0.00025869 420.84989706428803 36.617 0.60476 32.334 32.077 32.682 -4.2835 164 37 5 0 0 0 0.0086209 3 21443 21321;21443;21567 81.915 72.151 1 648620000 29780 3399 19641 20027 35217;35218;35219 35218 -0.09127412505040411 KYMEENDQL 9 Unmodified _KYMEENDQL_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.259765625 2 585.260796 1168.50704 0.8655 0.00050655 -2.929 -0.0017142 -2.0635 -0.0012077 585.2588547433206 32.523 0.40941 28.667 28.463 28.872 -3.8562 31 21 2 0 0 0 0.05483 1 18535 18535 43.772 17.504 1 6644500 29781 9418 19642 20028 35220 35220 -0.07047422604546227 KYMEGSKLHYF 11 Oxidation (M) _KYM(Oxidation (M))EGSKLHYF_ KYM(1)EGSKLHYF KYM(49)EGSKLHYF 0 0 1 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.5639038085938 3 473.56395 1417.67002 0.0030493 1.4441E-06 0.15905 7.532E-05 0.1621 7.6764E-05 473.56418085589814 29.136 0.22053 29.166 29.054 29.274 0.030104 28 8 4 0 0 0 0.060768 1 15211 15211 48.561 43.845 1 8473400 29782 10920 19643 20029 35221 35221 1739 -0.022106194827074432 KYMEGSKLHYF 11 Oxidation (M) _KYM(Oxidation (M))EGSKLHYF_ KYM(1)EGSKLHYF KYM(50)EGSKLHYF 0 0 1 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.5639038085938 3 473.56395 1417.67002 0.92442 0.00043777 -0.61959 -0.00029342 0.30483 0.00014436 473.563633411996 32.132 0.39699 28.437 28.226 28.623 -3.6958 53 22 3 0 0 0 0.054857 2 18335 18203;18335 49.842 33.277 1 50155000 29783 10920 19643 20029 35222;35223 35223 1739 -0.022106194827074432 KYMEGSKLHYF 11 Unmodified _KYMEGSKLHYF_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2332153320312 3 468.232312 1401.67511 0.35055 0.00016414 0.48307 0.00022619 0.83362 0.00039033 468.56686524375107 38.514 0.33961 34.145 33.98 34.319 -4.3689 51 21 3 0 0 0 0.047603 2 22815 22660;22815 42.068 28.549 1 42938000 29784 10920 19643 20030 35224;35225 35225 -0.009663156200758749 KYMETIEKL 9 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ KYM(1)ETIEKL KYM(120)ETIEKL 0 0 1 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8070068359375 2 585.807382 1169.60021 -0.44465 -0.00026048 -0.8374 -0.00049055 -1.2821 -0.00075104 585.8069735895043 29.712 0.32577 29.712 29.489 29.815 0 66 21 4 0 0 0 0.0040067 2 15413 15312;15413 121.35 48.378 1 47537000 29785 6922 19644 20031 35226;35227 35227 1196 0.022195018487082052 KYMETIEKL 9 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ KYM(1)ETIEKL KYM(100)ETIEKL 0 0 1 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8077392578125 2 585.807382 1169.60021 0.43772 0.00025642 -0.89438 -0.00052393 -0.45665 -0.00026751 585.8071471656262 32.963 0.42976 29.107 28.904 29.334 -3.8562 54 27 3 0 0 0 0.0088735 2 18803 18803;18932 104.48 48.982 1 52944000 29786 6922 19644 20031 35228;35229 35228 1196 0.022195018487082052 KYMETIEKL 9 Oxidation (M) _KYM(Oxidation (M))ETIEKL_ KYM(1)ETIEKL KYM(65)ETIEKL 0 0 1 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8750305175781 3 390.874014 1169.60021 0.82694 0.00032323 0.50262 0.00019646 1.3296 0.00051969 390.87406634792393 33.028 0.55535 29.172 28.924 29.48 -3.8562 52 34 2 0 0 0 0.01861 2 18814 18814;18939 64.927 34.223 1 38414000 29787 6922 19644 20031 35230;35231 35230 1196 0.022195018487082052 KYMETIEKL 9 Unmodified _KYMETIEKL_ 0 0 0 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.8101806640625 2 577.809925 1153.6053 0.4585 0.00026492 -0.77428 -0.00044739 -0.31579 -0.00018246 577.8090746359219 38.253 0.14811 38.253 38.165 38.313 0 14 10 2 0 0 0 0.015688 1 20414 20414 67.838 20.089 1 13576000 29788 6922 19644 20032 35232 35232 0.03463805711317036 KYMETIEKL 9 Unmodified _KYMETIEKL_ 0 0 0 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8102416992188 2 577.809925 1153.6053 0.7212 0.00041672 -0.35242 -0.00020363 0.36878 0.00021309 577.8094896934703 43.386 0.77391 38.621 38.161 38.935 -4.7648 140 51 4 0 0 0 0.00035075 3 26377 26240;26377;26511 147.24 64.711 1 138930000 29789 6922 19644 20032 35233;35234;35235 35234 0.03463805711317036 KYMETIEKL 9 Unmodified _KYMETIEKL_ 0 0 0 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;nc|ENSG00000162869|Q6ZMI0-4|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5426635742188 3 385.542375 1153.6053 1.09 0.00042024 -0.46298 -0.0001785 0.62703 0.00024174 385.54200126744496 43.397 0.72392 38.632 38.243 38.967 -4.7648 99 48 3 0 0 0 0.025842 2 26334 26334;26469 46.022 24.432 1 67212000 29790 6922 19644 20032 35236;35237 35236 0.03463805711317036 KYMEVHEKASF 11 Oxidation (M) _KYM(Oxidation (M))EVHEKASF_ KYM(1)EVHEKASF KYM(65)EVHEKASF 0 0 1 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2236328125 3 462.223705 1383.64929 0.044644 2.0635E-05 -0.20042 -9.2639E-05 -0.15578 -7.2004E-05 462.2236799658312 19.239 0.17887 19.239 19.147 19.326 0 44 11 6 0 0 0 0.0128 1 9595 9595 64.86 59.813 1 28475000 29791 1181 19645 20033 35238 35238 197 -0.027192098623572747 KYMEVHEKASF 11 Oxidation (M) _KYM(Oxidation (M))EVHEKASF_ KYM(1)EVHEKASF KYM(42)EVHEKASF 0 0 1 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.2230834960938 3 462.223705 1383.64929 -0.67571 -0.00031233 0.37875 0.00017507 -0.29696 -0.00013726 462.2238590315848 19.092 0.13463 19.115 19.05 19.184 0.023106 17 6 3 0 0 0 0.10787 1 9612 9612 41.567 37.979 1 3430500 29792 1181 19645 20033 35239 35239 197 -0.027192098623572747 KYMEVHEKASF 11 Oxidation (M) _KYM(Oxidation (M))EVHEKASF_ KYM(1)EVHEKASF KYM(69)EVHEKASF 0 0 1 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2239074707031 3 462.223705 1383.64929 1.1965 0.00055307 -1.04 -0.00048071 0.15654 7.2358E-05 462.2233245608116 21.307 0.41304 18.572 18.373 18.786 -2.7348 114 35 4 0 0 0 0.0093465 1 11416 11416 68.563 62.372 1 56031000 29793 1181 19645 20033 35240 35240 197 -0.027192098623572747 KYMEVHEKASF 11 Unmodified _KYMEVHEKASF_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.8927612304688 3 456.892067 1367.65437 0.83426 0.00038117 -0.37037 -0.00016922 0.46389 0.00021195 456.89189045762544 28.728 0.34285 25.58 25.358 25.701 -3.1482 60 16 5 0 0 0 0.091371 2 15977 15977;16097 45.603 39.734 1 124520000 29794 1181 19645 20034 35241;35242 35241 -0.014749059997484437 KYMIEKIKF 9 Unmodified _KYMIEKIKF_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5673522949219 3 400.566744 1198.6784 0.28345 0.00011354 0.78651 0.00031505 1.07 0.00042859 400.5670234829615 85.514 0.75885 79.339 78.837 79.596 -6.1757 85 46 2 0 0 0 0.171 1 56183 56183 26.021 2.2196 1 70715000 + 29795 17319 19646 20035 35243 35243 0.08700979224568073 KYMKEKLLF 9 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ KYM(1)KEKLLF KYM(59)KEKLLF 0 0 1 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3447875976562 2 608.343935 1214.67332 0.14332 8.7187E-05 -0.53683 -0.00032658 -0.39351 -0.00023939 608.3432847245041 33.42 0.2058 33.449 33.317 33.523 0.028934 19 8 3 0 0 0 0.024189 1 17565 17565 59.368 13.629 1 3437200 29796 13549 19647 20036 35244 35244 1764 0.07456675361959242 KYMKEKLLF 9 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ KYM(1)KEKLLF KYM(48)KEKLLF 0 0 1 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3421630859375 2 608.343935 1214.67332 0.30511 0.00018561 -0.64298 -0.00039115 -0.33787 -0.00020554 608.3435668102636 36.531 0.32645 32.247 32.111 32.438 -4.2835 29 20 2 0 0 0 0.044042 2 21285 21285;21413 47.732 17.029 1 11092000 29797 13549 19647 20036 35245;35246 35245 1764 0.07456675361959242 KYMKEKLLF 9 Oxidation (M) _KYM(Oxidation (M))KEKLLF_ KYM(1)KEKLLF KYM(44)KEKLLF 0 0 1 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8991088867188 3 405.898382 1214.67332 0.85901 0.00034867 -0.014021 -5.6909E-06 0.84499 0.00034298 405.8984192574972 77.716 0.76534 71.541 71.117 71.882 -6.1757 99 43 3 0 0 0 0.052231 2 50613 50613;50740 44.392 17.304 1 17760000 29798 13549 19647 20036 35247;35248 35247 1764 0.07456675361959242 KYMKEKLLF 9 Unmodified _KYMKEKLLF_ 0 0 0 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5678100585938 3 400.566744 1198.6784 1.0664 0.00042716 -0.078039 -3.126E-05 0.98834 0.0003959 400.56676544682307 42.485 0.35554 37.8 37.613 37.969 -4.6846 61 23 3 0 0 0 0.331 1 25618 25618 15.739 3.5639 1 36027000 29799 13549 19647 20037 35249 35249 0.08700979224568073 KYMKEKLLF 9 Unmodified _KYMKEKLLF_ 0 0 0 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5675964355469 3 400.566744 1198.6784 0.28345 0.00011354 0.78651 0.00031505 1.07 0.00042859 400.5670234829615 85.514 0.75885 79.339 78.837 79.596 -6.1757 85 46 2 0 0 0 0.024507 1 56039 56039 59.052 31.964 1 70715000 29800 13549 19647 20037 35250 35250 0.08700979224568073 KYMKEKLLF 9 Unmodified _KYMKEKLLF_ 0 0 0 ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF ENST00000453153.6_2_2:170428583-170430242:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3471069335938 2 600.346477 1198.6784 -0.47566 -0.00028556 0.23571 0.00014151 -0.23994 -0.00014405 600.3463719825061 85.409 0.37469 79.233 79.121 79.495 -6.1757 36 22 2 0 0 0 0.022653 1 56257 56257 65.474 19.734 1 20977000 29801 13549 19647 20037 35251 35251 0.08700979224568073 KYMKVLFGTEF 11 Unmodified _KYMKVLFGTEF_ 0 0 0 ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.9096374511719 3 454.909058 1361.70534 1.1548 0.00052532 0.49008 0.00022294 1.6449 0.00074827 454.9089274589963 93.916 0.17002 87.741 87.636 87.806 -6.1757 13 9 2 0 0 0 0.37825 1 62217 62217 14.171 8.3026 1 8288000 29802 13626 19648 20038 35252 35252 0.03896043045119768 KYMKVLFGTEF 11 Unmodified _KYMKVLFGTEF_ 0 0 0 ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF ENST00000458236.1_1_6:29706493-29716746:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 681.8610229492188 2 681.859949 1361.70534 NaN NaN NaN NaN NaN NaN NaN 93.968 1 87.792 87.292 88.292 -6.1757 0 0 0 0.041329 1 62229 62229 64.927 35.086 1 29803 13626 19648 20038 35253 35253 0.03896043045119768 KYMLEVEI 8 Unmodified _KYMLEVEI_ 0 0 0 ENSG00000077984|ENST00000480798|CST7 ENSG00000077984|ENST00000480798|CST7 ENSG00000077984|ENST00000480798|CST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.772705078125 2 512.772811 1023.53107 1.2715 0.00065198 -1.5283 -0.00078368 -0.25684 -0.0001317 512.7719306266856 50.553 0.22431 50.499 50.325 50.55 -0.053871 17 10 2 0 0 0 0.75262 1 27348 27348 12.532 3.9383 1 1096400 29804 1230 19649 20039 35254 35254 0.020244626197836624 KYMLKANLI 9 Oxidation (M) _KYM(Oxidation (M))LKANLI_ KYM(1)LKANLI KYM(120)LKANLI 0 0 1 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3228759765625 2 555.323002 1108.63145 -0.0091308 -5.0705E-06 -0.23733 -0.0001318 -0.24646 -0.00013687 555.3231358010789 41.564 0.29919 41.562 41.402 41.701 -0.0017891 42 13 5 0 0 0 0.0055767 1 22188 22188 115.69 51.456 1 45944000 29805 7146 19650 20040 35255 35255 1232 0.0814811967343303 KYMLKANLI 9 Oxidation (M) _KYM(Oxidation (M))LKANLI_ KYM(1)LKANLI KYM(75)LKANLI 0 0 1 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3233642578125 2 555.323002 1108.63145 0.73628 0.00040887 -0.20794 -0.00011548 0.52834 0.0002934 555.3225935908674 46.01 0.54174 41.055 40.713 41.255 -4.9549 89 35 4 0 0 0 0.011968 1 28370 28370 74.929 44.704 1 81260000 29806 7146 19650 20040 35256 35256 1232 0.0814811967343303 KYMLKANLI 9 Oxidation (M) _KYM(Oxidation (M))LKANLI_ 0 0 1 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.323002 1108.63145 0.43482 0.00024146 -0.97107 -0.00053925 -0.53625 -0.00029779 555.3224891961436 40.988 0.15676 40.986 40.851 41.008 -0.0017929 -0.034109 -0.0006069 NaN 74.929 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2035800 29807 7146 19650 20040 1232 0.0814811967343303 KYMLKANLI 9 Unmodified _KYMLKANLI_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3261108398438 2 547.325545 1092.63654 0.78242 0.00042824 0.4058 0.00022211 1.1882 0.00065034 547.3261003898838 51.371 0.38327 45.722 45.528 45.912 -5.649 50 23 3 0 0 0 0.00856 2 32376 32251;32376 100.37 49.516 1 99927000 29808 7146 19650 20041 35257;35258 35258 0.09392423536064598 KYMLKANLI 9 Unmodified _KYMLKANLI_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2200317382812 3 365.219455 1092.63654 1.5088 0.00055104 -0.98152 -0.00035847 0.52728 0.00019257 365.2193304312276 51.38 0.23169 45.731 45.586 45.818 -5.649 23 13 2 0 0 0 0.042911 1 32311 32311 51.63 18.844 1 32441000 29809 7146 19650 20041 35259 35259 0.09392423536064598 KYMLLCKIML 10 Carbamidomethyl (C),Oxidation (M) _KYMLLC(Carbamidomethyl (C))KIM(Oxidation (M))L_ KYMLLC(1)KIML KYMLLCKIM(1)L KYMLLC(50)KIML KYM(-49)LLCKIM(49)L 0 1 1 ENSG00000108671|ENST00000261712|PSMD11;nc|ENSG00000108671|O00231-2|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 ENSG00000108671|ENST00000261712|PSMD11 MSMS AL20221201_MKP_PDAC_01 4 443.575927734375 3 443.576146 1327.70661 NaN NaN NaN NaN NaN NaN NaN 93.312 1 87.136 86.636 87.636 -6.1757 0 0 0 0.12115 1 61754 61754 49.527 31.664 2 29810 2596 19651 20042 35260 35260 265 447 0.05586217818017758 KYMLTHQEL 9 Oxidation (M) _KYM(Oxidation (M))LTHQEL_ KYM(1)LTHQEL KYM(94)LTHQEL 0 0 1 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7974853515625 2 589.797349 1177.58014 -0.69902 -0.00041228 0.32946 0.00019432 -0.36956 -0.00021797 589.797694757834 27.771 0.2653 27.771 27.659 27.924 0 33 12 3 0 0 0 0.0081 1 14300 14300 93.938 81.407 1 11617000 29811 4969 19652 20043 35261 35261 908 -0.0015424909124703845 KYMLTHQEL 9 Oxidation (M) _KYM(Oxidation (M))LTHQEL_ KYM(1)LTHQEL KYM(150)LTHQEL 0 0 1 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7980346679688 2 589.797349 1177.58014 0.82481 0.00048647 0.066485 3.9213E-05 0.89129 0.00052568 589.7972410944692 31.012 0.37155 27.515 27.23 27.602 -3.497 24 16 2 0 0 0 0.00035075 1 17486 17486 147.24 99.646 1 33544000 29812 4969 19652 20043 35262 35262 908 -0.0015424909124703845 KYMLTHQEL 9 Oxidation (M) _KYM(Oxidation (M))LTHQEL_ KYM(1)LTHQEL KYM(53)LTHQEL 0 0 1 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5354309082031 3 393.533991 1177.58014 1.1997 0.00047211 2.9858 0.001175 4.1854 0.0016471 393.53503905910145 31.023 0.44618 27.526 27.175 27.621 -3.497 33 20 2 0 0 0 0.033747 1 17540 17540 53.317 24.822 1 35270000 29813 4969 19652 20043 35263 35263 908 -0.0015424909124703845 KYMLTHQEL 9 Unmodified _KYMLTHQEL_ 0 0 0 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2030639648438 3 388.202353 1161.58523 1.2955 0.00050292 0.20768 8.0621E-05 1.5032 0.00058354 388.20250165790577 35.628 0.39684 31.435 31.252 31.648 -4.1928 65 24 3 0 0 0 0.039985 2 20760 20622;20760 45.74 29.591 1 53623000 29814 4969 19652 20044 35264;35265 35265 0.010900547713617925 KYMLTHQEL 9 Unmodified _KYMLTHQEL_ 0 0 0 ENST00000560125.1_1_15:69737113-69739281:+|nuORF;ENST00000558303.5_1_15:69737113-69740143:+|nuORF;nc|ENSG00000137807|Q02241-3|KIF23;nc|ENSG00000137807|Q02241-2|KIF23;nc|ENSG00000137807|Q02241|KIF23;ENSG00000137807|ENST00000679126|KIF23 ENST00000560125.1_1_15:69737113-69739281:+|nuORF ENST00000560125.1_1_15:69737113-69739281:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8004150390625 2 581.799891 1161.58523 0.92004 0.00053528 -0.84823 -0.0004935 0.071806 4.1777E-05 581.7996830106244 35.661 0.37887 31.468 31.252 31.63 -4.1928 70 23 4 0 0 0 2.6516E-06 2 20761 20625;20761 155.95 103.69 1 37309000 29815 4969 19652 20044 35266;35267 35267 0.010900547713617925 KYMPNVKVAVF 11 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ KYM(1)PNVKVAVF KYM(41)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2435607910156 3 437.90917 1310.70568 0.34014 0.00014895 -0.50616 -0.00022165 -0.16602 -7.2702E-05 437.90896998848973 45.6 0.30557 45.572 45.439 45.745 -0.028011 59 15 5 0 0 0 0.10976 1 24467 24467 41.347 32.595 1 70221000 29816 230;10107 19653 20045 35268 35268 18 0.06275462764938311 KYMPNVKVAVF 11 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ KYM(1)PNVKVAVF KYM(83)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.8617553710938 2 656.360116 1310.70568 0.47444 0.00031141 -0.76488 -0.00050204 -0.29044 -0.00019063 656.3597121927149 45.607 0.2886 45.579 45.456 45.745 -0.028011 41 14 4 0 0 0 0.0010665 1 24482 24482 82.529 70.289 1 21762000 29817 230;10107 19653 20045 35269 35269 18 0.06275462764938311 KYMPNVKVAVF 11 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ KYM(1)PNVKVAVF KYM(58)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.3603515625 2 656.360116 1310.70568 0.69355 0.00045522 -0.082936 -5.4436E-05 0.61061 0.00040078 656.3601331273054 45.92 0.29822 45.892 45.745 46.043 -0.028015 47 13 4 0 0 0 0.019459 1 24694 24694 57.722 46.922 1 21249000 29818 230;10107 19653 20045 35270 35270 18 0.06275462764938311 KYMPNVKVAVF 11 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ KYM(1)PNVKVAVF KYM(83)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3609619140625 2 656.360116 1310.70568 0.83586 0.00054863 -0.40761 -0.00026754 0.42826 0.00028109 656.861295611211 51.054 0.32565 45.405 45.232 45.558 -5.649 35 19 2 0 0 0 0.00098399 2 32009 32009;32151 83.429 67.28 1 30150000 29819 230;10107 19653 20045 35271;35272 35271 18 0.06275462764938311 KYMPNVKVAVF 11 Oxidation (M) _KYM(Oxidation (M))PNVKVAVF_ KYM(1)PNVKVAVF KYM(55)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MSMS AL20221201_MKP_PDAC_01 4 438.2433471679688 3 437.90917 1310.70568 NaN NaN NaN NaN NaN NaN NaN 51.154 1 45.505 45.005 46.005 -5.649 0 0 0 0.074314 1 32166 32166 55.249 47.772 1 29820 230;10107 19653 20045 35273 35273 18 0.06275462764938311 KYMPNVKVAVF 11 Unmodified _KYMPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5776977539062 3 432.577531 1294.71076 0.88218 0.00038161 -0.54329 -0.00023501 0.33889 0.0001466 432.57734405538037 52.631 0.26099 52.572 52.426 52.687 -0.058918 37 12 4 0 0 0 0.33469 1 28499 28499 24.957 19.91 1 9453100 29821 230;10107 19653 20046 35274 35274 0.0751976662756988 KYMPNVKVAVF 11 Unmodified _KYMPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3632202148438 2 648.362659 1294.71076 0.96114 0.00062317 -0.21327 -0.00013827 0.74787 0.00048489 648.8640040342967 52.62 0.24254 52.561 52.426 52.669 -0.058918 27 11 3 0 0 0 0.0017085 1 28513 28513 79.596 68.797 1 6110200 29822 230;10107 19653 20046 35275 35275 0.0751976662756988 KYMPNVKVAVF 11 Unmodified _KYMPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3635864257812 2 648.362659 1294.71076 0.32039 0.00020773 -0.56327 -0.0003652 -0.24287 -0.00015747 648.3625000368437 78.387 0.98075 72.212 71.684 72.665 -6.1757 174 58 4 0 0 0 7.9578E-11 5 51497 50981;51114;51243;51368;51497 133.05 115.94 1 92930000 29823 230;10107 19653 20046 35276;35277;35278;35279;35280 35280 0.0751976662756988 KYMPNVKVAVF 11 Unmodified _KYMPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5772705078125 3 432.577531 1294.71076 0.51146 0.00022124 -0.90224 -0.00039029 -0.39078 -0.00016904 432.577311543954 78.378 1.0774 72.203 71.634 72.712 -6.1757 178 64 3 0 0 0 0.10976 5 51428 51043;51173;51298;51428;51561 41.347 41.347 1 109730000 29824 230;10107 19653 20046 35281;35282;35283;35284;35285 35284 0.0751976662756988 KYMPSVKVSVF 11 Unmodified _KYMPSVKVSVF_ 0 0 0 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.9058227539062 3 428.905537 1283.69478 0.99899 0.00042847 0.39445 0.00016918 1.3934 0.00059765 428.9055236683645 77.915 0.34696 71.74 71.518 71.865 -6.1757 30 19 2 0 0 0 0.23243 2 51056 50889;51056 30.354 20.039 1 12923000 29825 3684 19654 20047 35286;35287 35287 0.06428060390658175 KYMPSVKVSVF 11 Unmodified _KYMPSVKVSVF_ 0 0 0 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MSMS AL20221201_MKP_PDAC_01 4 642.8553466796875 2 642.854667 1283.69478 NaN NaN NaN NaN NaN NaN NaN 77.88 1 71.704 71.204 72.204 -6.1757 0 0 0 0.034937 1 50956 50956 78.61 47.342 1 29826 3684 19654 20047 35288 35288 0.06428060390658175 KYMQKSLEL 9 Oxidation (M) _KYM(Oxidation (M))QKSLEL_ KYM(1)QKSLEL KYM(81)QKSLEL 0 0 1 nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3071899414062 2 578.307549 1154.60055 -0.36829 -0.00021298 -0.32076 -0.0001855 -0.68904 -0.00039848 578.3074937311904 28.707 0.26035 28.707 28.579 28.839 0 34 12 4 0 0 0 0.0099157 1 14823 14823 80.676 40.726 1 11970000 29827 7058 19655 20048 35289 35289 1214 0.029429215685240706 KYMQKSLEL 9 Oxidation (M) _KYM(Oxidation (M))QKSLEL_ KYM(1)QKSLEL KYM(140)QKSLEL 0 0 1 nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3071899414062 2 578.307549 1154.60055 0.7219 0.00041748 -0.19185 -0.00011095 0.53005 0.00030653 578.3070942492246 31.306 0.25576 27.61 27.539 27.795 -3.6958 20 13 2 0 0 0 0.00085914 1 17713 17713 140.63 78.06 1 34310000 29828 7058 19655 20048 35290 35290 1214 0.029429215685240706 KYMQKSLEL 9 Oxidation (M) _KYM(Oxidation (M))QKSLEL_ 0 0 1 nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 578.307549 1154.60055 0.64757 0.0003745 -0.31022 -0.0001794 0.33735 0.00019509 578.3070404666894 28.664 0.094057 28.602 28.528 28.622 -0.062159 -0.052605 1.1329E-05 NaN 80.676 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1081100 29829 7058 19655 20048 1214 0.029429215685240706 KYMQKSLEL 9 Unmodified _KYMQKSLEL_ 0 0 0 nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.542724609375 3 380.542487 1138.60563 1.6845 0.00064104 2.4907 0.00094784 4.1753 0.0015889 380.5423279852477 37.583 0.45425 33.286 33.073 33.527 -4.2973 84 26 4 0 0 0 0.1773 1 22032 22032 18.373 6.8784 1 77898000 29830 7058 19655 20049 35291 35291 0.04187225431155639 KYMQKSLEL 9 Unmodified _KYMQKSLEL_ 0 0 0 nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 nc|ENSG00000163728|Q96N46-2|TTC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.310302734375 2 570.310092 1138.60563 1.3405 0.0007645 2.0769 0.0011845 3.4174 0.001949 570.3097783607097 37.575 0.5023 33.292 33.039 33.541 -4.2835 78 29 3 0 0 0 0.012228 1 22087 22087 74.2 26.451 1 56612000 29831 7058 19655 20049 35292 35292 0.04187225431155639 KYMSTCRLI 9 Carbamidomethyl (C) _KYMSTC(Carbamidomethyl (C))RLI_ KYMSTC(1)RLI KYMSTC(41)RLI 0 1 0 nc|ENSG00000133119|P40938-2|RFC3;ENSG00000133119|ENST00000380071|RFC3 nc|ENSG00000133119|P40938-2|RFC3 nc|ENSG00000133119|P40938-2|RFC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2044067382812 3 391.203588 1170.58893 1.2896 0.00050448 -1.1926 -0.00046653 0.096998 3.7946E-05 391.20322061802483 38.112 0.21425 33.743 33.581 33.795 -4.3689 13 12 2 0 0 0 0.067618 1 22449 22449 40.725 32.281 1 7698400 29832 4492 19656 20050 35293 35293 462 0.010464012735610595 KYMSVIAEL 9 Unmodified _KYMSVIAEL_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2864990234375 2 527.286085 1052.55762 0.3028 0.00015966 -2.0025 -0.0010559 -1.6997 -0.0008962 527.2846125311513 63.714 0.25658 63.228 63.061 63.318 -0.48617 24 11 3 0 0 0 0.094149 1 34721 34721 34.402 15.145 1 3409600 29833 3711 19657 20051 35294 35294 0.0334415151110079 KYMSVIAEL 9 Unmodified _KYMSVIAEL_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MSMS AL20221201_MKP_PDAC_01 4 527.28662109375 2 527.286085 1052.55762 NaN NaN NaN NaN NaN NaN NaN 81.376 1 75.2 74.7 75.7 -6.1757 0 0 0 0.098496 1 53414 53414 43.772 1.9328 1 29834 3711 19657 20051 35295 35295 0.0334415151110079 KYMSVIAEL 9 Unmodified _KYMSVIAEL_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MSMS AL20221201_MKP_PDAC_01 4 527.2872924804688 2 527.286085 1052.55762 NaN NaN NaN NaN NaN NaN NaN 81.588 1 75.412 74.912 75.912 -6.1757 0 0 0 0.13831 1 53561 53561 38.176 3.7738 1 29835 3711 19657 20051 35296 35296 0.0334415151110079 KYMSVIAEL 9 Unmodified _KYMSVIAEL_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MSMS AL20221201_MKP_PDAC_01 4 527.2853393554688 2 527.286085 1052.55762 NaN NaN NaN NaN NaN NaN NaN 81.886 1 75.711 75.211 76.211 -6.1757 0 0 0 0.12343 1 53769 53769 39.95 10.868 1 29836 3711 19657 20051 35297 35297 0.0334415151110079 KYMTAVVKLF 10 Unmodified _KYMTAVVKLF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5669250488281 3 400.566744 1198.6784 -0.1316 -5.2714E-05 -0.2383 -9.5455E-05 -0.3699 -0.00014817 400.56662848558295 38.146 0.21761 38.163 38.048 38.265 0.01704 26 9 4 0 0 0 0.52659 1 20280 20280 14.957 1.3423 1 3895700 29837 734 19658 20052 35298 35298 0.08700979224568073 KYMTAVVKLF 10 Unmodified _KYMTAVVKLF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5671691894531 3 400.566744 1198.6784 1.0664 0.00042716 -0.078039 -3.126E-05 0.98834 0.0003959 400.56676544682307 42.485 0.35554 37.8 37.613 37.969 -4.6846 61 23 3 0 0 0 0.39689 1 25745 25745 21.799 1.2185 1 36027000 29838 734 19658 20052 35299 35299 0.08700979224568073 KYMTAVVKLF 10 Unmodified _KYMTAVVKLF_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5670776367188 3 400.566744 1198.6784 0.28345 0.00011354 0.78651 0.00031505 1.07 0.00042859 400.5670234829615 85.514 0.75885 79.339 78.837 79.596 -6.1757 85 46 2 0 0 0 0.45406 1 56340 56340 18.721 1.2786 1 70715000 29839 734 19658 20052 35300 35300 0.08700979224568073 KYMTDGMLL 9 Unmodified _KYMTDGMLL_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF;ENSG00000109606|ENST00000336812|DHX15 ENSG00000067596|ENST00000262415|DHX8;ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2627563476562 2 536.264296 1070.51404 1.2493 0.00066994 -0.9275 -0.00049738 0.32177 0.00017255 536.2637706279963 64.558 0.51675 58.382 58.15 58.666 -6.1757 47 28 2 0 0 0 0.28023 1 41915 41915 18.146 1.2041 1 22286000 29840 2658;960 19659 20053 35301 35301 -0.018397812576722572 KYMTDGMLL 9 2 Oxidation (M) _KYM(Oxidation (M))TDGM(Oxidation (M))LL_ KYM(1)TDGM(1)LL KYM(42)TDGM(42)LL 0 0 2 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF;ENSG00000109606|ENST00000336812|DHX15 ENSG00000067596|ENST00000262415|DHX8;ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20221201_MKP_PDAC_01 4 552.260009765625 2 552.25921 1102.50387 NaN NaN NaN NaN NaN NaN NaN 42.728 1 38.044 37.544 38.544 -4.6846 0 0 0 0.10759 1 25848 25848 41.84 9.5341 1 29841 2658;960 19659 20054 35302 35302 155;156 -0.04328388982889919 KYMTDGMLL 9 2 Oxidation (M) _KYM(Oxidation (M))TDGM(Oxidation (M))LL_ KYM(1)TDGM(1)LL KYM(44)TDGM(44)LL 0 0 2 ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF;ENSG00000109606|ENST00000336812|DHX15 ENSG00000067596|ENST00000262415|DHX8;ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20221201_MKP_PDAC_01 4 552.2593383789062 2 552.25921 1102.50387 NaN NaN NaN NaN NaN NaN NaN 42.908 1 38.223 37.723 38.723 -4.6846 0 0 0 0.098496 1 25985 25985 43.772 19.099 1 29842 2658;960 19659 20054 35303 35303 155;156 -0.04328388982889919 KYMTISDEW 9 Unmodified _KYMTISDEW_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MSMS AL20221201_MKP_PDAC_01 4 586.7682495117188 2 586.768257 1171.52196 NaN NaN NaN NaN NaN NaN NaN 59.434 1 53.319 52.819 53.819 -6.1147 0 0 0 0.068038 1 38164 38164 51.63 22.548 1 29843 2409 19660 20055 35304 35304 -0.056939307365382774 KYMTPMQQKL 10 Unmodified _KYMTPMQQKL_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1;ENST00000480064.1_1_3:52643285-52649409:-|nuORF nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.223388671875 3 423.22276 1266.64645 1.4148 0.00059877 -0.55903 -0.0002366 0.85575 0.00036217 423.22277186402 37.011 0.30547 32.727 32.585 32.891 -4.2835 35 18 3 0 0 0 0.061642 1 21680 21680 55.249 36.876 1 9533300 29844 7101 19661 20056 35305 35305 0.023792434791175765 KYMTPVILLVF 11 Unmodified _KYMTPVILLVF_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000552099.5_1_12:49165333-49167571:-|nuORF;ENST00000547260.5_1_12:49165333-49167887:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.3904418945312 2 662.390885 1322.76722 0.50014 0.00033129 0.76971 0.00050985 1.2699 0.00084114 662.3913831691685 101.47 0.09874 95.292 95.231 95.33 -6.1757 9 4 3 0 0 0 0.24981 1 68099 68099 29.437 6.7009 1 12514000 29845 8404 19662 20057 35306 35306 0.11874394464234683 KYMVYPQTF 9 Oxidation (M) _KYM(Oxidation (M))VYPQTF_ KYM(1)VYPQTF KYM(52)VYPQTF 0 0 1 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7887573242188 2 596.788992 1191.56343 0.071447 4.2639E-05 -0.48092 -0.00028701 -0.40947 -0.00024437 596.7885569619041 45.436 0.13571 45.112 45.059 45.195 -0.32425 12 7 2 0 0 0 0.03568 1 24271 24271 52.268 26.869 1 13970000 29846 2937 19663 20058 35307 35307 508 -0.024687499772426236 KYMVYPQTF 9 Oxidation (M) _KYM(Oxidation (M))VYPQTF_ KYM(1)VYPQTF KYM(89)VYPQTF 0 0 1 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7889404296875 2 596.788992 1191.56343 0.60824 0.00036299 0.85011 0.00050734 1.4583 0.00087033 596.7893908891202 50.72 0.45956 45.071 44.804 45.264 -5.649 46 28 2 0 0 0 0.0086722 1 31851 31851 88.954 48.997 1 34025000 29847 2937 19663 20058 35308 35308 508 -0.024687499772426236 KYMVYPQTF 9 Unmodified _KYMVYPQTF_ 0 0 0 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7911376953125 2 588.791535 1175.56852 0.13404 7.8923E-05 0.89434 0.00052658 1.0284 0.0006055 588.7914728542665 58.016 0.36192 51.988 51.736 52.098 -6.0275 34 20 2 0 0 0 0.0086904 1 37065 37065 107.19 67.23 1 50427000 29848 2937 19663 20059 35309 35309 -0.012244461146110552 KYMYFTVVM 9 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ KYM(1)YFTVVM(1) KYM(50)YFTVVM(50) 0 0 2 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2854614257812 2 607.285228 1212.5559 -0.17134 -0.00010405 -0.88826 -0.00053943 -1.0596 -0.00064348 607.2850608993468 51.395 0.51361 50.981 50.698 51.212 -0.41351 103 26 5 0 0 0 0.039985 2 27602 27602;27708 49.933 36.925 1 107700000 29849 5143 19664 20060 35310;35311 35310 941;942 -0.041872255691487226 KYMYFTVVM 9 2 Oxidation (M) _KYM(Oxidation (M))YFTVVM(Oxidation (M))_ KYM(1)YFTVVM(1) KYM(69)YFTVVM(69) 0 0 2 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.28515625 2 607.285228 1212.5559 0.31859 0.00019348 -1.0593 -0.00064331 -0.74073 -0.00044984 607.2848533542924 50.985 0.55781 50.931 50.708 51.266 -0.053871 130 27 6 0 0 0 0.014417 3 27492 27492;27598;27698 69.105 36.799 1 296680000 29850 5143 19664 20060 35312;35313;35314 35312 941;942 -0.041872255691487226 KYMYFTVVM 9 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ KYMYFTVVM(1) KYM(-58)YFTVVM(58) 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2880249023438 2 599.287771 1196.56099 0.35047 0.00021003 -0.43701 -0.0002619 -0.086546 -5.1866E-05 599.2879549271076 58.915 0.49734 58.855 58.546 59.044 -0.060719 96 24 5 0 0 0 0.020973 2 32001 32001;32101 62.573 35.689 2 28675000 29851 5143 19664 20061 35315;35316 35315 941;942 -0.029429217065398916 KYMYFTVVM 9 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ KYMYFTVVM(1) KYM(-46)YFTVVM(46) 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2880249023438 2 599.287771 1196.56099 0.49947 0.00029933 -1.6373 -0.00098122 -1.1378 -0.00068189 599.2879369547716 64.731 0.90312 58.555 58.186 59.089 -6.1757 80 50 2 0 0 0 0.044011 2 41938 41938;42065 47.749 27.295 2 155630000 29852 5143 19664 20061 35317;35318 35317 941;942 -0.029429217065398916 KYMYFTVVM 9 Oxidation (M) _KYMYFTVVM(Oxidation (M))_ KYMYFTVVM(1) KYM(-47)YFTVVM(47) 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2870483398438 2 599.287771 1196.56099 0.14947 8.9573E-05 -0.008716 -5.2234E-06 0.14075 8.435E-05 599.2881707598882 67.165 0.65866 60.99 60.664 61.323 -6.1757 52 36 3 0 0 0 0.044011 1 43694 43694 47.749 20.865 2 12566000 29853 5143 19664 20061 35319 35319 941;942 -0.029429217065398916 KYMYFTVVM 9 Oxidation (M) _KYM(Oxidation (M))YFTVVM_ KYM(1)YFTVVM KYM(42)YFTVVM(-42) 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2877197265625 2 599.287771 1196.56099 -0.15107 -9.0537E-05 0.020274 1.215E-05 -0.1308 -7.8387E-05 599.2879018140467 77.168 2.2644 70.993 69.338 71.603 -6.1757 213 125 3 0 0 0 0.06294 3 50382 50382;50623;50753 41.84 23.693 2 32314000 29854 5143 19664 20061 35320;35321;35322 35320 941;942 -0.029429217065398916 KYMYFTVVM 9 Oxidation (M) _KYM(Oxidation (M))YFTVVM_ KYM(1)YFTVVM KYM(50)YFTVVM(-50) 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MSMS AL20221201_MKP_PDAC_01 4 599.2874145507812 2 599.287771 1196.56099 NaN NaN NaN NaN NaN NaN NaN 78.331 1 72.156 71.656 72.656 -6.1757 0 0 0 0.074615 1 51268 51268 49.933 15.531 2 29855 5143 19664 20061 35323 35323 941;942 -0.029429217065398916 KYMYFTVVM 9 Oxidation (M) _KYM(Oxidation (M))YFTVVM_ 0 0 1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 599.287771 1196.56099 0.99719 0.0005976 -1.0486 -0.00062842 -0.051418 -3.0814E-05 599.2871113045304 71.204 0.31834 71.243 71.068 71.386 0.039024 0.12523 -0.0011731 NaN 41.84 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 722570 29856 5143 19664 20061 941;942 -0.029429217065398916 KYMYFTVVM 9 Unmodified _KYMYFTVVM_ 0 0 0 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.791748046875 2 591.290314 1180.56607 0.12825 7.5835E-05 0.92011 0.00054405 1.0484 0.00061989 591.2909615521323 73.321 0.5684 73.364 73.186 73.754 0.043228 97 25 5 0 0 0 0.031062 3 40360 40360;40369;40471 54.774 23.049 1 17040000 29857 5143 19664 20062 35324;35325;35326 35324 -0.016986178439310606 KYMYFTVVM 9 Unmodified _KYMYFTVVM_ 0 0 0 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 ENSG00000139289|ENST00000266671|PHLDA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2911987304688 2 591.290314 1180.56607 0.8925 0.00052773 -0.74475 -0.00044037 0.14775 8.7361E-05 591.2902420685723 94.858 1.1795 88.683 87.96 89.14 -6.1757 236 67 5 0 0 0 0.06294 4 62918 62562;62679;62801;62918 41.84 21.386 1 333300000 29858 5143 19664 20062 35327;35328;35329;35330 35330 -0.016986178439310606 KYNANFVTF 9 Unmodified _KYNANFVTF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.27978515625 2 552.279649 1102.54475 0.31958 0.0001765 0.12931 7.1415E-05 0.44889 0.00024792 552.2797735225452 55.716 0.45624 55.238 54.945 55.401 -0.47798 69 21 4 0 0 0 0.01958 1 30238 30238 81.613 59.866 1 41955000 29859 8288 19665 20063 35331 35331 -0.0024254355678294814 KYNANFVTF 9 Unmodified _KYNANFVTF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2808227539062 2 552.279649 1102.54475 0.084387 4.6605E-05 0.30334 0.00016753 0.38772 0.00021413 552.2797400479633 55.358 0.45782 55.289 55.019 55.477 -0.068737 71 22 4 0 0 0 0.036857 2 30007 30007;30107 57.471 39.336 1 78848000 29860 8288 19665 20063 35332;35333 35332 -0.0024254355678294814 KYNANFVTF 9 Unmodified _KYNANFVTF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2801513671875 2 552.279649 1102.54475 1.0921 0.00060316 -0.23472 -0.00012963 0.85741 0.00047353 552.2794872258028 61.067 0.7488 54.919 54.63 55.379 -6.1478 116 38 4 0 0 0 0.01958 4 39478 39225;39352;39478;39627 81.613 53.126 1 369610000 29861 8288 19665 20063 35334;35335;35336;35337 35336 -0.0024254355678294814 KYNDFGNSF 9 Unmodified _KYNDFGNSF_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2417602539062 2 546.243264 1090.47197 0.18236 9.9613E-05 -0.36998 -0.0002021 -0.18762 -0.00010249 546.2430328377084 40.073 0.34106 40.073 39.873 40.214 0 47 16 4 0 0 0 0.032796 1 21470 21470 53.833 35.698 1 22684000 29862 7504 19666 20064 35338 35338 -0.06964297350191373 KYNDFGNSF 9 Unmodified _KYNDFGNSF_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2431030273438 2 546.243264 1090.47197 NaN NaN NaN NaN NaN NaN NaN 40.43 1 40.132 39.632 40.632 -0.29716 0 0 0 0.074615 1 21372 21372 49.933 29.062 1 29863 7504 19666 20064 35339 35339 -0.06964297350191373 KYNDFGNSF 9 Unmodified _KYNDFGNSF_ 0 0 0 ENSG00000166526|ENST00000299667|ZNF3;ENST00000487620.1_1_7:99668768-99673049:-|nuORF ENSG00000166526|ENST00000299667|ZNF3 ENSG00000166526|ENST00000299667|ZNF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2449340820312 2 546.243264 1090.47197 0.29892 0.00016328 0.61324 0.00033498 0.91216 0.00049826 546.2437456066134 45.368 0.35884 40.413 40.254 40.613 -4.9549 44 24 2 0 0 0 0.32235 1 27973 27973 16.149 2.2431 1 38127000 29864 7504 19666 20064 35340 35340 -0.06964297350191373 KYNDIDLTI 9 Unmodified _KYNDIDLTI_ 0 0 0 ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7891235351562 2 547.790047 1093.56554 0.012253 6.7122E-06 1.0448 0.00057233 1.057 0.00057904 547.7906116198877 56.37 0.27141 56.37 56.247 56.518 0 24 12 3 0 0 0 0.010611 1 31346 31346 78.728 30.979 1 4883300 29865 254 19667 20065 35341 35341 0.022500020322468117 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.268310546875 2 559.269281 1116.52401 0.54448 0.00030451 1.0562 0.0005907 1.6007 0.00089521 559.2697729514844 68.039 0.27181 68.039 67.875 68.146 0 31 13 3 0 0 0 0.20428 1 37888 37888 22.736 11.912 1 2083400 29866 466 19668 20066 35342 35342 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.27001953125 2 559.269281 1116.52401 0.64472 0.00036057 -0.21079 -0.00011789 0.43393 0.00024268 559.2694589925887 68.433 0.49749 67.952 67.745 68.242 -0.48071 59 22 4 0 0 0 0.010611 2 37341 37341;37440 78.728 46.423 1 29828000 29867 466 19668 20066 35343;35344 35343 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2703857421875 2 559.269281 1116.52401 0.73444 0.00041075 -0.61983 -0.00034665 0.11461 6.4099E-05 559.2695372516198 68.007 0.312 68.032 67.815 68.127 0.025146 25 14 2 0 0 0 0.0055767 1 37300 37300 115.69 75.735 1 11613000 29868 466 19668 20066 35345 35345 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2706298828125 2 559.269281 1116.52401 1.1932 0.00066733 -0.59324 -0.00033178 0.59998 0.00033555 559.2696692720756 72.066 0.60256 65.89 65.656 66.259 -6.1757 51 31 3 0 0 0 0.024882 1 47118 47118 58.679 30.192 1 50624000 29869 466 19668 20066 35346 35346 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MSMS AL20221201_MKP_PDAC_01 4 559.2682495117188 2 559.269281 1116.52401 NaN NaN NaN NaN NaN NaN NaN 78.347 1 72.171 71.671 72.671 -6.1757 0 0 0 0.059498 1 51279 51279 53.833 21.527 1 29870 466 19668 20066 35347 35347 -0.029591339364287705 KYNDNFFGL 9 Unmodified _KYNDNFFGL_ 0 0 0 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 ENSG00000012963|ENST00000013070|UBR7 MSMS AL20221201_MKP_PDAC_01 4 559.2702026367188 2 559.269281 1116.52401 NaN NaN NaN NaN NaN NaN NaN 78.627 1 72.451 71.951 72.951 -6.1757 0 0 0 0.038824 1 51481 51481 62.573 22.615 1 29871 466 19668 20066 35348 35348 -0.029591339364287705 KYNDTFWKE 9 Unmodified _KYNDTFWKE_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.864501953125 3 410.864506 1229.57169 0.13658 5.6115E-05 0.64497 0.00026499 0.78155 0.00032111 410.8647467506469 42.811 0.27716 42.5 42.357 42.634 -0.31039 24 11 3 0 0 0 0.20507 1 22756 22756 22.658 7.7009 1 8210800 29872 7515 19669 20067 35349 35349 -0.03391479736251313 KYNDTFWKE 9 Unmodified _KYNDTFWKE_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8651123046875 3 410.864506 1229.57169 0.18807 7.7269E-05 0.31613 0.00012989 0.5042 0.00020716 410.8647763999186 42.545 0.17834 42.536 42.421 42.599 -0.0088196 16 7 3 0 0 0 0.20507 1 22783 22783 22.658 4.7949 1 5276200 29873 7515 19669 20067 35350 35350 -0.03391479736251313 KYNDTFWKE 9 Unmodified _KYNDTFWKE_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.2445373535156 3 410.864506 1229.57169 1.5845 0.00065103 0.27316 0.00011223 1.8577 0.00076326 411.19906483679716 47.443 0.36419 42.209 42.087 42.451 -5.2339 34 20 2 0 0 0 0.20728 1 29575 29575 9.544 3.3521 1 11726000 29874 7515 19669 20067 35351 35351 -0.03391479736251313 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 689.3278198242188 2 689.327328 1376.6401 0.20478 0.00014116 0.68731 0.00047378 0.89209 0.00061494 689.3273977919998 58.299 0.28334 57.808 57.638 57.921 -0.49079 39 13 4 0 0 0 0.047566 1 31658 31658 74.772 56.399 1 7764300 29875 7515 19670 20068 35352 35352 -0.03315235156401286 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.8876037597656 3 459.88731 1376.6401 0.1363 6.2681E-05 0.37809 0.00017388 0.51439 0.00023656 459.8874697419392 58.299 0.24343 57.808 57.658 57.901 -0.49079 20 11 2 0 0 0 0.24975 1 31669 31669 30.431 25.384 1 6856700 29876 7515 19670 20068 35353 35353 -0.03315235156401286 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 689.326416015625 2 689.327328 1376.6401 0.95237 0.00065649 -0.15495 -0.00010681 0.79742 0.00054968 689.8286110256302 57.942 0.21516 57.876 57.735 57.95 -0.066036 27 10 3 0 0 0 0.056827 1 31537 31537 70.496 47.837 1 4074600 29877 7515 19670 20068 35354 35354 -0.03315235156401286 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.8878479003906 3 459.88731 1376.6401 0.98153 0.00045139 -0.86668 -0.00039858 0.11485 5.2817E-05 459.8869623364292 57.953 0.21485 57.887 57.755 57.97 -0.066036 22 10 3 0 0 0 0.30673 1 31539 31539 27.088 22.972 1 3304300 29878 7515 19670 20068 35355 35355 -0.03315235156401286 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.8876342773438 3 459.88731 1376.6401 0.69758 0.00032081 -0.14602 -6.7153E-05 0.55156 0.00025366 459.8873466231275 82.026 0.78392 75.85 75.395 76.179 -6.1757 103 43 3 0 0 0 0.061642 3 53949 53685;53814;53949 55.249 50.201 1 22491000 29879 7515 19670 20068 35356;35357;35358 35358 -0.03315235156401286 KYNDTFWKEF 10 Unmodified _KYNDTFWKEF_ 0 0 0 ENSG00000166598|ENST00000299767|HSP90B1;ENST00000551983.1_1_12:104335630-104337190:+|nuORF;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P ENSG00000166598|ENST00000299767|HSP90B1 ENSG00000166598|ENST00000299767|HSP90B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 689.328857421875 2 689.327328 1376.6401 0.4985 0.00034363 0.15131 0.0001043 0.64981 0.00044793 689.3272603298013 81.954 0.68156 75.778 75.481 76.163 -6.1757 103 37 3 0 0 0 1.1407E-15 4 53815 53687;53815;53950;54081 208.59 155.18 1 24756000 29880 7515 19670 20068 35359;35360;35361;35362 35360 -0.03315235156401286 KYNEPTFDF 9 Unmodified _KYNEPTFDF_ 0 0 0 REV__ENSG00000178127|ENST00000318388|NDUFV2 REV__ENSG00000178127|ENST00000318388|NDUFV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7672119140625 2 580.766571 1159.51859 0.73396 0.00042626 -0.68242 -0.00039633 0.051537 2.9931E-05 580.7661747189728 62.228 0.25658 61.74 61.615 61.872 -0.48764 26 11 3 0 0 0 0.39863 1 33893 33893 12.532 2.4576 1 2901100 + 29881 23023 19671 20069 35363 35363 -0.05478857518892255 KYNFPFHCPF 10 Unmodified _KYNFPFHCPF_ 0 0 0 REV__ENSG00000169393|ENST00000339841|ELSPBP1 REV__ENSG00000169393|ENST00000339841|ELSPBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.3001708984375 2 650.302601 1298.59065 NaN NaN NaN NaN NaN NaN NaN 85.662 1 85.662 85.162 86.162 0 0 0 0 0.99091 1 47466 47466 1.6526 0.17072 1 + 29882 22397 19672 20070 35364 35364 -0.04670221646188111 KYNGEPVQI 9 Unmodified _KYNGEPVQI_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.277587890625 2 524.277106 1046.53966 NaN NaN NaN NaN NaN NaN NaN 35.911 1 35.911 35.411 36.411 0 0 0 0 0.02218 1 19014 19014 75.761 10.526 1 29883 4028 19673 20071 35365 35365 0.01825152580613576 KYNGEPVQI 9 Unmodified _KYNGEPVQI_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2801513671875 2 524.277106 1046.53966 0.5453 0.00028589 3.4552 0.0018115 4.0005 0.0020974 524.2790983166934 40.428 0.34056 35.899 35.757 36.097 -4.5294 24 20 2 0 0 0 0.010611 1 24148 24148 78.728 6.8058 1 16134000 29884 4028 19673 20071 35366 35366 0.01825152580613576 KYNHLNLFL 9 Unmodified _KYNHLNLFL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8857727050781 3 387.885353 1160.63423 0.51832 0.00020105 0.77182 0.00029938 1.2901 0.00050043 387.8856646473006 58.602 0.32823 58.541 58.333 58.661 -0.060719 25 16 2 0 0 0 0.1685 1 31917 31917 26.268 11.863 1 2443900 29885 2128 19674 20072 35367 35367 0.06033711122586283 KYNHLNLFL 9 Unmodified _KYNHLNLFL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3248901367188 2 581.324391 1160.63423 NaN NaN NaN NaN NaN NaN NaN 58.632 1 58.571 58.071 59.071 -0.060719 0 0 0 0.39118 1 31940 31940 28.487 9.0478 1 29886 2128 19674 20072 35368 35368 0.06033711122586283 KYNHLNLFL 9 Unmodified _KYNHLNLFL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.32470703125 2 581.324391 1160.63423 0.29209 0.0001698 -0.53122 -0.00030881 -0.23913 -0.00013901 581.3240858149439 93.429 0.11163 87.253 87.207 87.318 -6.1757 13 7 2 0 0 0 0.032796 1 61833 61833 60.39 29.753 1 15074000 29887 2128 19674 20072 35369 35369 0.06033711122586283 KYNHLNLFL 9 Unmodified _KYNHLNLFL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.88525390625 3 387.885353 1160.63423 0.71713 0.00027816 0.55014 0.00021339 1.2673 0.00049156 387.8853882407068 93.488 0.10086 87.312 87.233 87.334 -6.1757 9 6 2 0 0 0 0.2324 2 61852 61852;61889 20.415 13.791 1 6840200 29888 2128 19674 20072 35370;35371 35370 0.06033711122586283 KYNHLNLFLF 10 Unmodified _KYNHLNLFLF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.9084777832031 3 436.908157 1307.70264 0.38837 0.00016968 -0.76542 -0.00033442 -0.37705 -0.00016474 436.9080325466489 77.66 0.23759 77.71 77.558 77.796 0.050339 22 9 3 0 0 0 0.22237 1 42864 42864 32.037 17.08 1 5734700 29889 2128 19675 20073 35372 35372 0.061099557024363094 KYNIFRSTF 9 Unmodified _KYNIFRSTF_ 0 0 0 nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181;ENSG00000197841|ENST00000492450|ZNF181 nc|ENSG00000197841|Q2M3W8-2|ZNF181 nc|ENSG00000197841|Q2M3W8-2|ZNF181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.315185546875 2 588.314023 1174.61349 0.58 0.00034122 0.70629 0.00041552 1.2863 0.00075675 588.3145801124707 47.943 0.13884 47.904 47.849 47.988 -0.038643 11 6 2 0 0 0 0.2546 1 25874 25874 19.362 8.538 1 1825100 29890 10008 19676 20074 35373 35373 0.0331712074294046 KYNIMLVRL 9 Oxidation (M) _KYNIM(Oxidation (M))LVRL_ KYNIM(1)LVRL KYNIM(110)LVRL 0 0 1 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3418579101562 2 583.341726 1164.6689 0.4327 0.00025241 0.21847 0.00012744 0.65117 0.00037985 583.3419489427245 54.23 0.33717 54.163 54.001 54.338 -0.066936 54 16 4 0 0 0 0.0071894 2 29508 29409;29508 111.29 90.833 1 27551000 29891 6443 19677 20075 35374;35375 35375 1131 0.09315210939053031 KYNIMLVRL 9 Unmodified _KYNIMLVRL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8992309570312 3 383.898605 1148.67399 1.1708 0.00044948 1.2785 0.00049082 2.4493 0.0009403 383.8990445256485 91.181 0.45096 85.005 84.839 85.29 -6.1757 65 25 3 0 0 0 0.069655 2 60350 60222;60350 40.239 24.09 1 44846000 29892 6443 19677 20076 35376;35377 35377 0.105595148016846 KYNIMLVRL 9 Unmodified _KYNIMLVRL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.34521484375 2 575.344269 1148.67399 0.80636 0.00046393 0.29915 0.00017212 1.1055 0.00063605 575.3445368560888 91.222 0.40074 85.046 84.911 85.312 -6.1757 57 22 3 0 0 0 0.0039711 2 60267 60267;60405 136.33 100.63 1 30198000 29893 6443 19677 20076 35378;35379 35378 0.105595148016846 KYNKDGATLF 10 Unmodified _KYNKDGATLF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.8045043945312 2 578.803488 1155.59242 -0.49017 -0.00028371 1.2638 0.00073148 0.77361 0.00044777 578.8042113531794 33.074 0.18188 33.074 32.968 33.15 0 18 8 3 0 0 0 0.087164 1 17305 17305 49.527 15.425 1 2674500 29894 4087;13617 19678 20077 35380 35380 0.020851106434292888 KYNKDGATLF 10 Unmodified _KYNKDGATLF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2064819335938 3 386.204751 1155.59242 1.4451 0.00055812 1.0565 0.00040804 2.5017 0.00096616 386.20527763074324 36.119 0.26285 31.926 31.755 32.018 -4.1928 34 15 3 0 0 0 0.50362 1 21049 21049 10.315 2.7063 1 7466800 29895 4087;13617 19678 20077 35381 35381 0.020851106434292888 KYNKDGATLF 10 Unmodified _KYNKDGATLF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8063354492188 2 578.803488 1155.59242 1.0506 0.0006081 1.1001 0.00063676 2.1507 0.0012449 578.8042394526753 36.119 0.29627 31.926 31.741 32.037 -4.1928 35 17 3 0 0 0 0.021614 1 21050 21050 74.2 34.242 1 9029700 29896 4087;13617 19678 20077 35382 35382 0.020851106434292888 KYNKDGATLF 10 Unmodified _KYNKDGATLF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 578.803488 1155.59242 -0.19835 -0.00011481 0.56564 0.00032739 0.36729 0.00021259 578.8035645926326 33.075 0.19767 32.916 32.81 33.008 -0.15919 -0.079362 -0.0004377 NaN 49.527 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1120800 29897 4087;13617 19678 20077 0.020851106434292888 KYNLINEYF 9 Unmodified _KYNLINEYF_ 0 0 0 ENSG00000153936|ENST00000370550|HS2ST1;nc|ENSG00000153936|Q7LGA3-2|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3067626953125 2 602.305864 1202.59717 NaN NaN NaN NaN NaN NaN NaN 67.783 1 67.3 66.8 67.8 -0.48218 0 0 0 0.14 1 37036 37036 37.974 15.238 1 29898 6284 19679 20078 35383 35383 0.0039799478618078865 KYNLINEYF 9 Unmodified _KYNLINEYF_ 0 0 0 ENSG00000153936|ENST00000370550|HS2ST1;nc|ENSG00000153936|Q7LGA3-2|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 ENSG00000153936|ENST00000370550|HS2ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3067626953125 2 602.305864 1202.59717 NaN NaN NaN NaN NaN NaN NaN 67.313 1 67.331 66.831 67.831 0.018028 0 0 0 0.020219 1 36948 36948 78.149 40.175 1 29899 6284 19679 20078 35384 35384 0.0039799478618078865 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8273315429688 2 550.826766 1099.63898 0.043464 2.3941E-05 0.12201 6.7207E-05 0.16548 9.1148E-05 550.8269027198356 51.233 0.19359 50.819 50.718 50.912 -0.41351 17 9 2 0 0 0 0.032796 1 27601 27601 53.833 17.706 1 2902000 29900 5251 19680 20079 35385 35385 0.0931459526539129 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8265991210938 2 550.826766 1099.63898 0.51972 0.00028627 -0.29426 -0.00016209 0.22546 0.00012419 550.8266320704954 50.847 0.35307 50.793 50.589 50.942 -0.053871 46 17 4 0 0 0 0.0059585 1 27531 27531 114.65 62.381 1 22271000 29901 5251 19680 20079 35386 35386 0.0931459526539129 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.553955078125 3 367.553603 1099.63898 NaN NaN NaN NaN NaN NaN NaN 50.835 1 50.781 50.281 51.281 -0.053871 0 0 0 0.26667 1 27500 27500 19.362 0 1 29902 5251 19680 20079 35387 35387 0.0931459526539129 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.553955078125 3 367.553603 1099.63898 1.6581 0.00060944 -0.013998 -5.1449E-06 1.6441 0.0006043 367.55340701817545 87.234 0.3576 81.058 80.825 81.182 -6.1757 27 19 2 0 0 0 0.05447 2 57450 57450;57582 33.445 3.6043 1 14278000 29903 5251 19680 20079 35388;35389 35388 0.0931459526539129 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8273315429688 2 550.826766 1099.63898 1.0087 0.00055561 0.98473 0.00054242 1.9934 0.001098 550.8273638696493 87.201 0.41512 81.025 80.806 81.221 -6.1757 53 22 3 0 0 0 0.020973 1 57461 57461 62.573 26.446 1 30446000 29904 5251 19680 20079 35390 35390 0.0931459526539129 KYNLVTHIL 9 Unmodified _KYNLVTHIL_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710;ENSG00000178175|ENST00000318442|ZNF366 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 550.826766 1099.63898 0.81113 0.00044679 -2.522 -0.0013892 -1.7109 -0.00094239 551.3280023571635 56.476 0.048851 50.499 50.466 50.515 -5.9769 -0.20459 -0.002555 NaN 114.65 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 4971400 29905 5251 19680 20079 0.0931459526539129 KYNMVSYLL 9 Oxidation (M) _KYNM(Oxidation (M))VSYLL_ KYNM(1)VSYLL KYNM(42)VSYLL 0 0 1 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7974853515625 2 573.796817 1145.57908 0.30071 0.00017255 -0.25689 -0.0001474 0.043821 2.5144E-05 573.7971745605433 54.997 0.5148 54.929 54.764 55.278 -0.068737 68 25 3 0 0 0 0.06294 1 29840 29840 41.84 7.7372 1 17386000 29906 5087 19681 20080 35391 35391 936 0.012115365398130962 KYNMVSYLL 9 Oxidation (M) _KYNM(Oxidation (M))VSYLL_ KYNM(1)VSYLL KYNM(50)VSYLL 0 0 1 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7971801757812 2 573.796817 1145.57908 1.1481 0.00065875 -0.97276 -0.00055817 0.17529 0.00010058 573.7961986954025 60.552 0.5828 54.404 54.161 54.744 -6.1478 64 30 3 0 0 0 0.039985 1 38866 38866 49.933 13.889 1 36693000 29907 5087 19681 20080 35392 35392 936 0.012115365398130962 KYNMVSYLL 9 Unmodified _KYNMVSYLL_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.79931640625 2 565.79936 1129.58417 0.5421 0.00030672 -0.040271 -2.2785E-05 0.50183 0.00028393 565.7993351339034 69.785 0.38577 69.816 69.611 69.997 0.030914 32 19 2 0 0 0 0.08691 1 38368 38368 36.127 7.0454 1 13214000 29908 5087 19681 20081 35393 35393 0.024558404024446645 KYNMVSYLL 9 Unmodified _KYNMVSYLL_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7999877929688 2 565.79936 1129.58417 0.8244 0.00046645 0.17167 9.7132E-05 0.99607 0.00056358 565.7997280832953 93.656 0.5838 87.48 87.148 87.732 -6.1757 95 36 3 0 0 0 0.010818 3 61832 61832;61965;62100 78.149 26.241 1 122850000 29909 5087 19681 20081 35394;35395;35396 35394 0.024558404024446645 KYNPEGKQDI 10 Unmodified _KYNPEGKQDI_ 0 0 0 ENST00000477401.5_1_7:14660999-14880939:-|nuORF;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB ENST00000477401.5_1_7:14660999-14880939:-|nuORF ENST00000477401.5_1_7:14660999-14880939:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.3043212890625 2 596.303852 1190.59315 0.25243 0.00015053 -0.57819 -0.00034478 -0.32576 -0.00019425 596.3039350763078 39.142 0.21161 39.142 39.012 39.224 0 22 9 3 0 0 0 0.35903 1 20974 20974 24.021 2.4836 1 3429900 29910 4808 19682 20082 35397 35397 0.005479052925011274 KYNPTWHCI 9 Carbamidomethyl (C) _KYNPTWHC(Carbamidomethyl (C))I_ KYNPTWHC(1)I KYNPTWHC(50)I 0 1 0 ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2;ENSG00000088986|ENST00000242577|DYNLL1 ENST00000552316.1_1_12:120935833-120936010:+|nuORF ENST00000552316.1_1_12:120935833-120936010:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.7901611328125 2 609.789858 1217.56516 0.2173 0.00013251 0.11683 7.124E-05 0.33413 0.00020375 609.7896879467187 34.716 0.16995 34.743 34.648 34.818 0.027401 11 7 2 0 0 0 0.039985 1 18335 18335 49.933 35.095 1 2469900 29911 1505 19683 20083 35398 35398 143 -0.034916961686121795 KYNPTWHCI 9 Carbamidomethyl (C) _KYNPTWHC(Carbamidomethyl (C))I_ KYNPTWHC(1)I KYNPTWHC(96)I 0 1 0 ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2;ENSG00000088986|ENST00000242577|DYNLL1 ENST00000552316.1_1_12:120935833-120936010:+|nuORF ENST00000552316.1_1_12:120935833-120936010:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.790283203125 2 609.789858 1217.56516 0.5517 0.00033642 -0.11335 -6.9119E-05 0.43835 0.0002673 609.7899274374959 38.309 0.46406 33.941 33.733 34.197 -4.3689 107 28 6 0 0 0 0.0082548 3 22618 22491;22618;22765 99.799 79.345 1 252620000 29912 1505 19683 20083 35399;35400;35401 35400 143 -0.034916961686121795 KYNPTWHCI 9 Carbamidomethyl (C) _KYNPTWHC(Carbamidomethyl (C))I_ KYNPTWHC(1)I KYNPTWHC(46)I 0 1 0 ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2;ENSG00000088986|ENST00000242577|DYNLL1 ENST00000552316.1_1_12:120935833-120936010:+|nuORF ENST00000552316.1_1_12:120935833-120936010:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.86328125 3 406.862331 1217.56516 0.78975 0.00032132 0.11859 4.8251E-05 0.90835 0.00036957 406.86243924913407 38.308 0.43046 33.939 33.75 34.18 -4.3689 95 26 4 0 0 0 0.047788 1 22497 22497 45.7 25.289 1 274590000 29913 1505 19683 20083 35402 35402 143 -0.034916961686121795 KYNQATPNF 9 Unmodified _KYNQATPNF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.76611328125 2 541.766906 1081.51926 -0.19362 -0.0001049 -0.32256 -0.00017475 -0.51618 -0.00027965 541.7668120744942 30.894 0.24416 30.894 30.73 30.974 0 20 11 2 0 0 0 0.009483 1 16044 16044 81.89 35.869 1 5668000 29914 3878 19684 20084 35403 35403 -0.018240180791963212 KYNQATPNF 9 Unmodified _KYNQATPNF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7669677734375 2 541.766906 1081.51926 0.23805 0.00012897 -0.16795 -9.0987E-05 0.070101 3.7979E-05 541.7668824164092 30.834 0.17416 30.732 30.641 30.815 -0.10269 9 6 2 0 0 0 0.05447 1 16026 16026 43.858 18.459 1 1695300 29915 3878 19684 20084 35404 35404 -0.018240180791963212 KYNQATPNF 9 Unmodified _KYNQATPNF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.766906 1081.51926 -0.12025 -6.5146E-05 -2.1647 -0.0011727 -2.2849 -0.0012379 542.266555426274 30.68 0.13388 30.71 30.649 30.783 0.030104 0.0080043 -0.0019451 NaN 81.89 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 553080 29916 3878 19684 20084 -0.018240180791963212 KYNQATPNF 9 Unmodified _KYNQATPNF_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 541.766906 1081.51926 0.68002 0.00036841 -0.35825 -0.00019409 0.32177 0.00017433 541.7667317358571 34.568 0.39817 30.472 30.301 30.7 -4.0951 -0.2296 1.2243E-05 NaN 81.89 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 20183000 29917 3878 19684 20084 -0.018240180791963212 KYNQGVVEHF 10 Unmodified _KYNQGVVEHF_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.8057861328125 2 610.806562 1219.59857 -0.39747 -0.00024278 1.2213 0.00074599 0.82385 0.00050321 610.8074086157671 29.657 0.17458 29.657 29.567 29.742 0 27 10 4 0 0 0 5.0622E-05 1 15343 15343 136.39 109.51 1 7904200 29918 3065 19685 20085 35405 35405 -0.0024437112506348058 KYNQGVVEHF 10 Unmodified _KYNQGVVEHF_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5391845703125 3 407.540134 1219.59857 -0.53295 -0.0002172 -0.22538 -9.1851E-05 -0.75833 -0.00030905 407.54017997600084 29.66 0.17458 29.66 29.567 29.742 0 24 10 4 0 0 0 0.18439 1 15351 15351 35.612 23.438 1 5748200 29919 3065 19685 20085 35406 35406 -0.0024437112506348058 KYNQGVVEHF 10 Unmodified _KYNQGVVEHF_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5413513183594 3 407.540134 1219.59857 0.59337 0.00024182 -0.24176 -9.8529E-05 0.3516 0.00014329 407.5403753649876 32.948 0.27167 29.092 28.872 29.144 -3.8562 33 15 3 0 0 0 0.24511 1 18764 18764 30.703 23.094 1 22693000 29920 3065 19685 20085 35407 35407 -0.0024437112506348058 KYNQGVVEHF 10 Unmodified _KYNQGVVEHF_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8063354492188 2 610.806562 1219.59857 0.39922 0.00024385 1.5034 0.00091831 1.9027 0.0011622 610.8063647066026 32.925 0.28603 29.068 28.872 29.158 -3.8562 37 16 4 0 0 0 2.2395E-11 1 18811 18811 203.64 151.37 1 21524000 29921 3065 19685 20085 35408 35408 -0.0024437112506348058 KYNQQYHKL 9 Unmodified _KYNQQYHKL_ 0 0 0 ENSG00000175318|ENST00000309731|GRAMD2A ENSG00000175318|ENST00000309731|GRAMD2A ENSG00000175318|ENST00000309731|GRAMD2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8841552734375 3 407.884012 1220.63021 0.29046 0.00011848 0.40235 0.00016411 0.69281 0.00028259 407.88417244529427 15.823 0.12928 13.295 13.23 13.359 -2.5273 50 31 2 0 0 0 0.54816 1 8129 8129 4.5289 1.2092 1 2305400 29922 8509 19686 20086 35409 35409 0.028716216289012664 KYNQVNSHF 9 Unmodified _KYNQVNSHF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7775268554688 2 568.777805 1135.54106 NaN NaN NaN NaN NaN NaN NaN 20.797 1 20.797 20.297 21.297 0 0 0 0 0.27852 1 10482 10482 26.268 10.421 1 29923 4278 19687 20087 35410 35410 -0.021292133306360483 KYNQVNSHF 9 Unmodified _KYNQVNSHF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5207824707031 3 379.520962 1135.54106 NaN NaN NaN NaN NaN NaN NaN 20.81 1 20.81 20.31 21.31 0 0 0 0 0.83049 1 10489 10489 2.2828 1.2113 1 29924 4278 19687 20087 35411 35411 -0.021292133306360483 KYNQVNSHF 9 Unmodified _KYNQVNSHF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MSMS AL20221201_MKP_PDAC_01 4 379.521484375 3 379.520962 1135.54106 NaN NaN NaN NaN NaN NaN NaN 23.065 1 20.286 19.786 20.786 -2.7784 0 0 0 0.098163 1 12455 12455 33.445 22.645 1 29925 4278 19687 20087 35412 35412 -0.021292133306360483 KYNRISREW 9 Unmodified _KYNRISREW_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000436669.1_1_20:5273036-5273120:-|nuORF ENSG00000109332|ENST00000453744|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.8912353515625 3 417.891278 1250.652 -0.28861 -0.00012061 -0.051462 -2.1505E-05 -0.34008 -0.00014212 418.22541207934455 21.107 0.12005 21.135 21.051 21.171 0.028355 10 6 2 0 0 0 0.57205 1 10692 10692 3.0723 1.4196 1 994780 29926 2644 19688 20088 35413 35413 0.03670426377448166 KYNRISREW 9 Unmodified _KYNRISREW_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000436669.1_1_20:5273036-5273120:-|nuORF ENSG00000109332|ENST00000453744|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8911743164062 3 417.891278 1250.652 0.040622 1.6975E-05 -0.48579 -0.00020301 -0.44516 -0.00018603 417.89104883686434 21.083 0.21625 21.093 20.998 21.215 0.010553 64 23 4 0 0 0 0.40615 1 10751 10751 12.175 4.5658 1 20228000 29927 2644 19688 20088 35414 35414 0.03670426377448166 KYNRISREW 9 Unmodified _KYNRISREW_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000436669.1_1_20:5273036-5273120:-|nuORF ENSG00000109332|ENST00000453744|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.8913879394531 3 417.891278 1250.652 0.48945 0.00020454 0.24163 0.00010098 0.73108 0.00030551 417.8914204858214 23.815 0.63073 20.988 20.726 21.356 -2.8273 110 37 4 0 0 0 0.19349 2 12923 12814;12923 23.801 17.567 1 67936000 29928 2644 19688 20088 35415;35416 35416 0.03670426377448166 KYNRLAREW 9 Unmodified _KYNRLAREW_ 0 0 0 ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3;ENST00000491770.1_1_7:43988203-43992291:+|nuORF;ENST00000415051.5_1_7:43982660-43992291:+|nuORF ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000078967|ENST00000222402|UBE2D4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5608520507812 3 412.55964 1234.65709 0.17365 7.1639E-05 0.39591 0.00016334 0.56955 0.00023497 412.55990694315915 25.221 0.15587 22.338 22.289 22.444 -2.8831 12 9 2 0 0 0 0.4887 1 13805 13805 5.4027 0 1 3316300 29929 1259 19689 20089 35417 35417 0.049147302400797344 KYNTGILFL 9 Unmodified _KYNTGILFL_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8084106445312 2 534.808042 1067.60153 1.2522 0.00066971 -0.93809 -0.0005017 0.31415 0.00016801 534.8074359642108 96.724 0.21851 90.548 90.437 90.656 -6.1757 21 12 2 0 0 0 0.25681 1 64126 64126 19.257 1.122 1 16889000 29930 5002 19690 20090 35418 35418 0.07043503999739187 KYNTTSDAVFA 11 Unmodified _KYNTTSDAVFA_ 0 0 0 ENST00000458672.5_1_7:35121204-35144268:-|nuORF ENST00000458672.5_1_7:35121204-35144268:-|nuORF ENST00000458672.5_1_7:35121204-35144268:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7967529296875 2 608.79586 1215.57717 -0.012707 -7.7359E-06 0.3894 0.00023706 0.37669 0.00022933 608.7959944965919 56.125 0.35435 50.148 49.95 50.304 -5.9769 32 20 2 0 0 0 0.15156 1 35806 35806 36.506 12.486 1 26511000 29931 13628 19691 20091 35419 35419 -0.021998009444359923 KYNVVFKYL 9 Unmodified _KYNVVFKYL_ 0 0 0 nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF nc|ENSG00000137822|Q9UGJ1|TUBGCP4 nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.337646484375 2 587.336967 1172.65938 0.90023 0.00052874 0.47815 0.00028084 1.3784 0.00080957 587.3367931602551 57.108 0.23997 57.042 56.879 57.119 -0.066036 23 11 3 0 0 0 0.008678 1 31065 31065 88.904 67.157 1 5645400 29932 4976 19692 20092 35420 35420 0.07995765925193155 KYNVVFKYL 9 Unmodified _KYNVVFKYL_ 0 0 0 nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF nc|ENSG00000137822|Q9UGJ1|TUBGCP4 nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8937072753906 3 391.893737 1172.65938 0.61644 0.00024158 -0.16512 -6.4708E-05 0.45133 0.00017687 391.89379866814795 57.074 0.16074 57.008 56.917 57.078 -0.066036 9 7 2 0 0 0 0.2143 1 31080 31080 15.248 9.0566 1 2522000 29933 4976 19692 20092 35421 35421 0.07995765925193155 KYNVVFKYL 9 Unmodified _KYNVVFKYL_ 0 0 0 nc|ENSG00000137822|Q9UGJ1|TUBGCP4;ENSG00000137822|ENST00000564079|TUBGCP4;ENST00000563963.1_1_15:43687726-43694213:+|nuORF nc|ENSG00000137822|Q9UGJ1|TUBGCP4 nc|ENSG00000137822|Q9UGJ1|TUBGCP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2282409667969 3 391.893737 1172.65938 1.4073 0.00055151 -0.7089 -0.00027781 0.69839 0.00027369 391.89354153596764 89.045 0.49095 82.869 82.636 83.127 -6.1757 63 27 3 0 0 0 0.16226 1 58873 58873 19.362 4.9566 1 22174000 29934 4976 19692 20092 35422 35422 0.07995765925193155 KYPASSSVF 9 Unmodified _KYPASSSVF_ 0 0 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2537841796875 2 493.2531 984.491647 0.6718 0.00033137 -0.11667 -5.7545E-05 0.55514 0.00027382 493.25314056122215 36.581 0.3017 36.581 36.43 36.732 0 38 14 3 0 0 0 0.032796 1 19374 19374 53.833 11.993 1 26323000 29935 10826 19693 20093 35423 35423 -0.0012192133942789951 KYPASTVQI 9 Unmodified _KYPASTVQI_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7829284667969 2 503.782025 1005.5495 0.44006 0.0002217 -0.34698 -0.0001748 0.09308 4.6892E-05 503.7818359075508 37.361 0.27346 37.361 37.219 37.493 0 46 14 4 0 0 0 0.010611 2 19826 19826;19943 78.728 4.3053 1 39318000 29936 1955 19694 20094 35424;35425 35424 0.04694340585979262 KYPDENGFDAF 11 Unmodified _KYPDENGFDAF_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.2876586914062 2 651.785492 1301.55643 -0.25751 -0.00016784 2.022 0.0013179 1.7645 0.0011501 651.7871222165809 52.307 0.36425 52.307 52.079 52.443 0 38 15 3 0 0 0 0.35659 2 28883 28883;28997 23.801 8.5526 1 3652000 29937 1247 19695 20095 35426;35427 35426 -0.0822839132408717 KYPDENGFDAF 11 Unmodified _KYPDENGFDAF_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.787353515625 2 651.785492 1301.55643 1.4104 0.0009193 0.65598 0.00042756 2.0664 0.0013469 651.7858347788422 58.917 0.39931 52.843 52.665 53.065 -6.0745 33 21 2 0 0 0 0.00063278 1 37788 37788 87.258 47.309 1 13506000 29938 1247 19695 20095 35428 35428 -0.0822839132408717 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8854370117188 3 368.885241 1103.63389 0.13802 5.0915E-05 2.3196 0.00085568 2.4577 0.00090659 368.88590597856705 51.144 0.57323 50.73 50.376 50.949 -0.41351 58 28 3 0 0 0 0.013041 1 27608 27608 57.249 20.174 1 3481700 29939 2329 19696 20096 35429 35429 0.08622291402753035 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8245849609375 2 552.824224 1103.63389 0.47238 0.00026115 1.3476 0.00074499 1.82 0.0010061 552.8251505330711 56.242 0.73661 50.265 49.931 50.668 -5.9769 83 42 3 0 0 0 0.033587 3 35948 35817;35948;36089 53.404 15.43 1 35666000 29940 2329 19696 20096 35430;35431;35432 35431 0.08622291402753035 KYPDIISRI 9 Unmodified _KYPDIISRI_ 0 0 0 nc|ENSG00000105486|P18858-2|LIG1;nc|ENSG00000105486|P18858-3|LIG1;ENSG00000105486|ENST00000263274|LIG1 nc|ENSG00000105486|P18858-2|LIG1 nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8858032226562 3 368.885241 1103.63389 1.1207 0.00041341 1.5529 0.00057285 2.6736 0.00098626 368.88568527630866 56.378 0.6301 50.401 50.002 50.632 -5.9769 54 36 2 0 0 0 0.036857 2 35889 35889;36030 40.725 13.637 1 27374000 29941 2329 19696 20096 35433;35434 35433 0.08622291402753035 KYPDLFQVNL 10 Unmodified _KYPDLFQVNL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8349609375 2 618.834788 1235.65502 0.4122 0.00025509 0.83048 0.00051393 1.2427 0.00076902 618.8353005995215 79.023 0.41293 78.537 78.295 78.708 -0.48595 35 17 3 0 0 0 0.67008 1 43205 43205 10.151 3.9448 1 1885100 29942 8786 19697 20097 35435 35435 0.04662256711617374 KYPDLFQVNL 10 Unmodified _KYPDLFQVNL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.83544921875 2 618.834788 1235.65502 NaN NaN NaN NaN NaN NaN NaN 78.396 1 78.448 77.948 78.948 0.052452 0 0 0 0.016073 1 43292 43292 74.2 39.798 1 29943 8786 19697 20097 35436 35436 0.04662256711617374 KYPDLFQVNL 10 Unmodified _KYPDLFQVNL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000509566.1_1_4:844107-866085:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8351440429688 2 618.834788 1235.65502 1.1785 0.00072929 -1.6756 -0.0010369 -0.49712 -0.00030764 618.83437867961 95.685 0.44925 89.509 89.247 89.696 -6.1757 58 27 3 0 0 0 0.05292 1 63321 63321 57.249 15.294 1 35233000 29944 8786 19697 20097 35437 35437 0.04662256711617374 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.8191528320312 2 543.818941 1085.62333 -0.20572 -0.00011187 -0.026837 -1.4594E-05 -0.23256 -0.00012647 543.8189158160586 41.713 0.47696 41.713 41.48 41.957 0 77 24 4 0 0 0 0.0047067 2 22561 22447;22561 118.07 49.988 1 41623000 29945 609 19698 20098 35438;35439 35439 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8817443847656 3 362.88172 1085.62333 -0.33355 -0.00012104 0.45158 0.00016387 0.11803 4.2831E-05 362.8818805564471 41.755 0.51147 41.755 41.48 41.992 0 72 26 4 0 0 0 0.078314 2 22473 22473;22596 29.437 11.995 1 43268000 29946 609 19698 20098 35440;35441 35440 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.818115234375 2 543.818941 1085.62333 -0.43789 -0.00023813 0.19409 0.00010555 -0.2438 -0.00013258 543.819005214397 41.971 0.46879 41.664 41.411 41.879 -0.30682 67 22 4 0 0 0 0.029718 2 22191 22191;22299 55.503 13.663 1 70502000 29947 609 19698 20098 35442;35443 35442 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8818359375 3 362.88172 1085.62333 -0.22556 -8.1852E-05 0.35739 0.00012969 0.13183 4.7839E-05 362.8818165271508 41.988 0.40443 41.681 41.454 41.859 -0.30682 61 19 4 0 0 0 0.06294 2 22250 22250;22355 32.037 16.863 1 74320000 29948 609 19698 20098 35444;35445 35444 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.818603515625 2 543.818941 1085.62333 -0.2526 -0.00013737 -0.15129 -8.2277E-05 -0.40389 -0.00021964 543.818872321763 41.686 0.39495 41.685 41.467 41.862 -0.0017891 44 18 3 0 0 0 0.10247 2 22233 22233;22332 32.786 8.7651 1 18765000 29949 609 19698 20098 35446;35447 35446 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8819885253906 3 362.88172 1085.62333 -0.33223 -0.00012056 -0.018752 -6.8046E-06 -0.35098 -0.00012737 362.8817587605964 41.723 0.30669 41.721 41.534 41.841 -0.0017929 38 14 3 0 0 0 0.06294 1 22277 22277 38.615 15.957 1 16532000 29950 609 19698 20098 35448 35448 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8200073242188 2 543.818941 1085.62333 0.39257 0.00021349 0.25759 0.00014008 0.65016 0.00035357 543.8190225606155 46.296 0.63763 41.276 40.886 41.524 -5.0204 157 47 4 0 0 0 0.024189 3 28349 28349;28484;28621 59.368 23.241 1 839650000 29951 609 19698 20098 35449;35450;35451 35449 0.08394308748324875 KYPDRVPVI 9 Unmodified _KYPDRVPVI_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8822021484375 3 362.88172 1085.62333 1.1734 0.00042581 0.85824 0.00031144 2.0317 0.00073725 362.8819831916795 46.302 0.61788 41.236 40.841 41.458 -5.0659 161 44 5 0 0 0 0.094149 2 28667 28528;28667 26.021 8.5781 1 767780000 29952 609 19698 20098 35452;35453 35453 0.08394308748324875 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.8758850097656 3 390.876634 1169.60807 0.31693 0.00012388 -0.56905 -0.00022243 -0.25212 -9.8547E-05 390.8763662795901 43.111 0.41122 43.111 42.889 43.3 0 39 20 2 0 0 0 0.38026 2 23332 23332;23454 22.775 13.799 1 11289000 29953 3522 19699 20099 35454;35455 35454 0.030053971604502294 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8108520507812 2 585.811313 1169.60807 0.40267 0.00023589 -0.72276 -0.0004234 -0.32009 -0.00018751 585.8104158215498 43.067 0.31408 43.067 42.928 43.242 0 25 15 2 0 0 0 0.053349 1 23389 23389 57.722 38.36 1 6215000 29954 3522 19699 20099 35456 35456 0.030053971604502294 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8765869140625 3 390.876634 1169.60807 0.21558 8.4263E-05 -0.40164 -0.00015699 -0.18607 -7.2729E-05 390.87641830537666 43.309 0.23952 42.998 42.885 43.124 -0.31039 19 11 2 0 0 0 0.32533 1 23041 23041 25.997 18.52 1 11849000 29955 3522 19699 20099 35457 35457 0.030053971604502294 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.81103515625 2 585.811313 1169.60807 0.10063 5.8952E-05 -0.048892 -2.8642E-05 0.051741 3.0311E-05 585.8113475136017 43.318 0.28169 43.008 42.863 43.144 -0.31039 24 13 2 0 0 0 0.002045 1 23052 23052 103.42 75.791 1 7192800 29956 3522 19699 20099 35458 35458 0.030053971604502294 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8768920898438 3 390.876634 1169.60807 1.0121 0.00039561 -0.57549 -0.00022494 0.43663 0.00017067 390.8766945722961 48.059 0.60131 42.825 42.451 43.053 -5.2339 98 36 4 0 0 0 0.11322 2 29892 29765;29892 44.392 28.653 1 73461000 29957 3522 19699 20099 35459;35460 35460 0.030053971604502294 KYPDSHLPTL 10 Unmodified _KYPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8126220703125 2 585.811313 1169.60807 0.54032 0.00031652 3.225 0.0018892 3.7653 0.0022058 585.8132205412119 48.124 0.2251 42.89 42.808 43.033 -5.2339 29 13 3 0 0 0 0.24975 1 29978 29978 28.495 16.254 1 24001000 29958 3522 19699 20099 35461 35461 0.030053971604502294 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.5906677246094 3 460.590494 1378.74965 0.17525 8.0718E-05 0.30031 0.00013832 0.47556 0.00021904 460.5906346548939 68.678 0.8019 68.198 67.825 68.627 -0.48071 89 35 3 0 0 0 0.012228 3 37573 37471;37573;37678 47.053 38.301 1 2671000 29959 6568 19700 20100 35462;35463;35464 35463 0.0754277046291918 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.383056640625 2 690.382103 1378.74965 0.24333 0.00016799 0.12457 8.6E-05 0.3679 0.00025399 690.3821618486787 68.728 0.61356 68.247 67.967 68.58 -0.48071 61 27 3 0 0 0 0.18957 2 37623 37518;37623 32.616 27.32 1 2036600 29960 6568 19700 20100 35465;35466 35466 0.0754277046291918 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.591064453125 3 460.590494 1378.74965 NaN NaN NaN NaN NaN NaN NaN 68.376 1 68.401 67.901 68.901 0.025146 0 0 0 0.52067 1 37564 37564 14.838 11.766 1 29961 6568 19700 20100 35467 35467 0.0754277046291918 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.5912475585938 3 460.590494 1378.74965 0.86279 0.00039739 -0.05628 -2.5922E-05 0.80651 0.00037147 460.5904896951529 90.411 0.57089 84.235 83.918 84.489 -6.1757 99 33 4 0 0 0 3.4633E-06 3 59556 59556;59695;59831 75.941 56.804 1 47761000 29962 6568 19700 20100 35468;35469;35470 35468 0.0754277046291918 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.3828125 2 690.382103 1378.74965 0.5747 0.00039676 0.67843 0.00046838 1.2531 0.00086514 690.3822658253304 90.438 0.50998 84.262 83.934 84.444 -6.1757 68 29 3 0 0 0 3.5484E-28 2 59594 59594;59733 157.24 141.09 1 29960000 29963 6568 19700 20100 35471;35472 35471 0.0754277046291918 KYPDVIQELKF 11 Unmodified _KYPDVIQELKF_ 0 0 0 ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000158158|Q6P4Q7-2|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 ENSG00000158158|ENST00000377075|CNNM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 690.382103 1378.74965 0.63012 0.00043502 0.84568 0.00058384 1.4758 0.0010189 690.3826447104416 68.241 0.3721 68.266 68.168 68.54 0.025146 0.0097686 0.00074171 NaN 32.616 28 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1642000 29964 6568 19700 20100 0.0754277046291918 KYPEIEEKL 9 Unmodified _KYPEIEEKL_ 0 0 0 ENST00000368520.1_1_10:135345455-135368187:+|nuORF;ENSG00000130649|ENST00000252945|CYP2E1 ENST00000368520.1_1_10:135345455-135368187:+|nuORF ENST00000368520.1_1_10:135345455-135368187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5453186035156 3 383.544773 1147.61249 0.61229 0.00023484 0.78679 0.00030177 1.3991 0.00053661 383.54494769638006 23.706 1.0325 20.879 20.396 21.428 -2.8273 242 64 5 0 0 0 0.25681 1 13132 13132 18.373 5.5005 1 720490000 29965 4232 19701 20101 35473 35473 0.044588615833845324 KYPEIKSLM 9 Oxidation (M) _KYPEIKSLM(Oxidation (M))_ KYPEIKSLM(1) KYPEIKSLM(48) 0 0 1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8045654296875 2 562.804642 1123.59473 1.001 0.00056337 -1.1521 -0.00064841 -0.1511 -8.5039E-05 562.803886973073 36.315 0.60003 32.122 31.678 32.278 -4.1928 67 36 3 0 0 0 0.044296 1 21168 21168 47.594 11.467 1 10549000 29966 5547 19702 20102 35474 35474 1017 0.03787823056859452 KYPEIKSLM 9 Unmodified _KYPEIKSLM_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2069091796875 3 370.207216 1107.59982 1.5634 0.00057879 -0.31286 -0.00011582 1.2506 0.00046297 370.20717865881767 49.69 0.59359 44.151 43.971 44.565 -5.5391 83 37 3 0 0 0 0.085319 2 31051 31051;31191 28.234 16.059 1 48936000 29967 5547 19702 20103 35475;35476 35475 0.0503212691949102 KYPEIKSLM 9 Unmodified _KYPEIKSLM_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MSMS AL20221201_MKP_PDAC_01 4 370.2072448730469 3 370.207216 1107.59982 NaN NaN NaN NaN NaN NaN NaN 49.455 1 44.059 43.559 44.559 -5.3961 0 0 0 0.41144 1 30901 30901 14.218 4.6742 1 29968 5547 19702 20103 35477 35477 0.0503212691949102 KYPELFANL 9 Unmodified _KYPELFANL_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1;ENST00000496420.5_1_7:92123531-92130970:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENST00000496420.5_1_7:92123531-92130970:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7986450195312 2 547.797675 1093.5808 1.1115 0.0006089 -2.2178 -0.0012149 -1.1062 -0.00060598 548.2959203343125 88.389 0.50256 82.213 81.939 82.441 -6.1757 38 27 2 0 0 0 0.05483 1 58372 58372 43.772 1.8168 1 7363600 29969 4039;14368 19703 20104 35478 35478 0.03774913620077314 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8131713867188 2 585.813325 1169.6121 0.10231 5.9936E-05 0.51308 0.00030057 0.61539 0.0003605 585.8135190428844 84.977 0.92319 84.977 84.488 85.411 0 138 45 4 0 0 0 0.013041 3 47092 46993;47092;47198 71.922 19.654 1 9059500 29970 10449;8229 19704 20105 35479;35480;35481 35480 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8132934570312 2 585.813325 1169.6121 0.10136 5.938E-05 -0.26668 -0.00015622 -0.16532 -9.6844E-05 585.8130513196226 84.548 1.1894 84.612 84.072 85.262 0.063179 209 51 5 0 0 0 0.020973 7 46605 46499;46605;46709;46809;46915;47023;47134 62.573 18.714 1 2053899999.9999998 29971 10449;8229 19704 20105 35482;35483;35484;35485;35486;35487;35488 35483 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8139038085938 2 585.813325 1169.6121 NaN NaN NaN NaN NaN NaN NaN 95.52 1 95.524 95.024 96.024 0.004158 0 0 0 0.56093 1 53066 53066 13.906 0 1 29972 10449;8229 19704 20105 35489 35489 0.03407486654191416 KYPENFFLL 9 Unmodified _KYPENFFLL_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8114013671875 2 585.813325 1169.6121 0.020452 1.1981E-05 -1.2084 -0.00070787 -1.1879 -0.00069589 585.8123431285969 98.82 0.63831 92.644 92.427 93.066 -6.1757 215 43 6 0 0 0 0.032796 3 65482 65482;65649;65832 53.833 9.9745 1 20298000000 29973 10449;8229 19704 20105 35490;35491;35492 35490 0.03407486654191416 KYPENFFLLR 10 Unmodified _KYPENFFLLR_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.9127197265625 3 442.911679 1325.71321 1.2681 0.00056165 -0.34544 -0.000153 0.92266 0.00040865 442.91158064393215 63.943 0.56286 63.933 63.61 64.173 -0.010532 66 27 3 0 0 0 0.10078 1 34965 34965 46.475 46.475 1 4298800 29974 10449;8229 19705 20106 35493 35493 0.06337938356887207 KYPENFFLLR 10 Unmodified _KYPENFFLLR_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000186298|ENST00000335007|PPP1CC;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000172531|P62136-3|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000172531|ENST00000376745|PPP1CA;ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.9120788574219 3 442.911679 1325.71321 1.297 0.00057444 0.057685 2.555E-05 1.3547 0.00059999 442.91186726171503 89.122 0.34909 82.947 82.727 83.076 -6.1757 29 19 2 0 0 0 0.040797 1 58792 58792 62.78 50.605 1 9895700 29975 10449;8229 19705 20106 35494 35494 0.06337938356887207 KYPFFRANI 9 Unmodified _KYPFFRANI_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3207397460938 2 578.319109 1154.62366 1.3194 0.00076304 0.68691 0.00039725 2.0063 0.0011603 578.3188857583475 50.496 0.30291 50.446 50.31 50.612 -0.049721 30 14 3 0 0 0 0.1773 1 27290 27290 25.399 5.9603 1 2899600 29976 2737 19706 20107 35495 35495 0.05253728468187546 KYPFFRANI 9 Unmodified _KYPFFRANI_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8818664550781 3 385.881831 1154.62366 NaN NaN NaN NaN NaN NaN NaN 50.576 1 50.522 50.022 51.022 -0.053871 0 0 0 0.10545 1 27351 27351 31.268 16.02 1 29977 2737 19706 20107 35496 35496 0.05253728468187546 KYPFIPLLL 9 Unmodified _KYPFIPLLL_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3478393554688 2 552.346803 1102.67905 4.0103 0.0022151 -0.94125 -0.0005199 3.0691 0.0016952 552.3461732145732 99.34 0.19754 99.312 99.189 99.387 -0.028282 18 6 4 0 0 0 0.016184 1 55173 55173 67.344 7.5486 1 8084400 29978 6622 19707 20108 35497 35497 0.1318214193595395 KYPFPILIN 9 Unmodified _KYPFPILIN_ 0 0 0 nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8250732421875 2 552.826235 1103.63792 0.27758 0.00015345 0.84429 0.00046674 1.1219 0.00062019 552.8264071671256 51.065 0.65177 50.651 50.376 51.028 -0.41351 79 32 4 0 0 0 0.32871 1 27454 27454 15.847 0 1 15057000 29979 5520 19708 20109 35498 35498 0.09024380896494222 KYPGCTPTI 9 Carbamidomethyl (C) _KYPGC(Carbamidomethyl (C))TPTI_ KYPGC(1)TPTI KYPGC(50)TPTI 0 1 0 nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7577514648438 2 518.760235 1035.50592 0.84147 0.00043652 -0.37947 -0.00019686 0.46199 0.00023966 518.75979037341 39.025 0.32428 34.574 34.379 34.704 -4.4509 36 18 3 0 0 0 0.039985 1 23074 23074 49.933 11.959 1 22421000 29980 2903 19709 20110 35499 35499 297 -0.010415921827870989 KYPGFLLNNF 10 Unmodified _KYPGFLLNNF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8243408203125 2 606.824224 1211.63389 0.17009 0.00010322 0.32579 0.00019769 0.49588 0.00030091 606.8243123908413 76.891 0.40556 76.941 76.722 77.128 0.05011 52 16 4 0 0 0 0.01132 2 42478 42377;42478 85.272 65.91 1 25935000 29981 1899 19710 20111 35500;35501 35501 0.036542914027450024 KYPGFLLNNF 10 Unmodified _KYPGFLLNNF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8245239257812 2 606.824224 1211.63389 0.91552 0.00055556 -0.44541 -0.00027029 0.47011 0.00028527 606.8238845162092 96.01 0.2473 89.834 89.678 89.925 -6.1757 46 14 4 0 0 0 0.00060102 2 63538 63538;63558 115.69 69.992 1 167660000 29982 1899 19710 20111 35502;35503 35502 0.036542914027450024 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.233154296875 3 395.232641 1182.67609 0.86951 0.00034366 -0.29636 -0.00011713 0.57315 0.00022653 395.2323850046935 50.289 0.28046 49.897 49.711 49.992 -0.3923 40 13 4 0 0 0 0.57006 1 27039 27039 12.856 3.312 1 8793500 29983 1966 19711 20112 35504 35504 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3455200195312 2 592.345323 1182.67609 0.87896 0.00052065 -0.95743 -0.00056713 -0.078471 -4.6482E-05 592.344756517182 50.279 0.15919 49.886 49.772 49.931 -0.3923 16 7 3 0 0 0 0.39452 1 27076 27076 21.537 9.2963 1 1990200 29984 1966 19711 20112 35505 35505 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2327880859375 3 395.232641 1182.67609 1.0747 0.00042477 -0.48839 -0.00019303 0.58634 0.00023174 395.2324137945458 49.939 0.38274 49.89 49.683 50.066 -0.048824 69 18 5 0 0 0 0.20815 2 26941 26941;27038 31.636 20.118 1 51582000 29985 1966 19711 20112 35506;35507 35506 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.345947265625 2 592.345323 1182.67609 1.0796 0.00063949 -0.37576 -0.00022258 0.70383 0.00041691 592.3450787384678 49.944 0.34335 49.896 49.723 50.066 -0.048828 49 16 4 0 0 0 0.018255 2 26971 26971;27073 82.529 34.781 1 17287000 29986 1966 19711 20112 35508;35509 35508 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2337036132812 3 395.232641 1182.67609 1.2817 0.00050656 -0.41145 -0.00016262 0.87022 0.00034394 395.23246064533254 55.079 0.44602 49.158 48.888 49.334 -5.9211 72 27 4 0 0 0 0.39452 2 34900 34900;35042 21.799 12.228 1 51260000 29987 1966 19711 20112 35510;35511 35510 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3455810546875 2 592.345323 1182.67609 0.89441 0.0005298 -0.25432 -0.00015065 0.64009 0.00037915 592.3453178367589 55.028 0.37844 49.107 48.921 49.3 -5.9211 57 23 3 0 0 0 0.00029288 2 35067 34930;35067 110.55 62.804 1 52960000 29988 1966 19711 20112 35512;35513 35513 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2335205078125 3 395.232641 1182.67609 1.3886 0.00054881 0.21881 8.6482E-05 1.6074 0.00063529 395.2327064785573 79.182 1.2304 73.006 72.515 73.746 -6.1757 156 71 3 0 0 0 0.14064 6 52149 51634;51759;51883;52011;52149;52306 37.771 13.439 1 41448000 29989 1966 19711 20112 35514;35515;35516;35517;35518;35519 35518 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.345947265625 2 592.345323 1182.67609 1.0387 0.00061525 0.30295 0.00017945 1.3416 0.0007947 592.3454952853923 79.218 1.0489 73.042 72.628 73.677 -6.1757 124 60 3 0 0 0 4.6903E-06 5 51783 51656;51783;51911;52033;52270 118.07 72.369 1 25401000 29990 1966 19711 20112 35520;35521;35522;35523;35524 35521 0.09206266811133901 KYPGHLAAITL 11 Unmodified _KYPGHLAAITL_ 0 0 0 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 ENSG00000101442|ENST00000243903|ACTR5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.232641 1182.67609 0.86951 0.00034366 -0.29636 -0.00011713 0.57315 0.00022653 395.2323850046935 50.289 0.28046 49.897 49.711 49.992 -0.3923 0.0034387 0.00012666 NaN 31.636 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8793500 29991 1966 19711 20112 0.09206266811133901 KYPHLVAGA 9 Unmodified _KYPHLVAGA_ 0 0 0 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 ENSG00000176978|ENST00000371579|DPP7 MSMS AL20221201_MKP_PDAC_01 4 478.2730407714844 2 478.271627 954.528701 NaN NaN NaN NaN NaN NaN NaN 46.912 1 41.832 41.332 42.332 -5.0805 0 0 0 0.43505 1 29055 29055 18.135 3.5533 1 29992 8641 19712 20113 35525 35525 0.04961794996984281 KYPHRLSVF 9 Unmodified _KYPHRLSVF_ 0 0 0 ENST00000311549.10_1_13:27825489-27827914:+|nuORF ENST00000311549.10_1_13:27825489-27827914:+|nuORF ENST00000311549.10_1_13:27825489-27827914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.885498046875 3 382.885464 1145.63456 -0.10008 -3.8321E-05 -0.65463 -0.00025065 -0.75471 -0.00028897 382.88485291231893 32.812 0.19449 32.842 32.742 32.937 0.029747 20 8 3 0 0 0 0.12424 2 17230 17219;17230 28.495 11.206 1 12569000 29993 11692 19713 20114 35526;35527 35527 0.0675713084247036 KYPHVQKW 8 Unmodified _KYPHVQKW_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5341796875 3 362.534543 1084.5818 -0.21594 -7.8285E-05 0.82738 0.00029995 0.61144 0.00022167 362.534779351603 21.868 0.6739 21.891 21.53 22.204 0.022896 76 33 3 0 0 0 0.63229 2 11050 11050;11154 25.399 22.404 1 3212800 29994 7633 19714 20115 35528;35529 35528 0.042891727796586565 KYPHVQKW 8 Unmodified _KYPHVQKW_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5350341796875 3 362.534543 1084.5818 0.07095 2.5722E-05 0.85918 0.00031148 0.93013 0.0003372 362.5348185351113 21.922 0.62059 21.936 21.587 22.208 0.013796 95 36 4 0 0 0 0.30525 3 11285 11082;11181;11285 45.7 31.794 1 7752300 29995 7633 19714 20115 35530;35531;35532 35532 0.042891727796586565 KYPHVQKW 8 Unmodified _KYPHVQKW_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5347595214844 3 362.534543 1084.5818 0.92088 0.00033385 -0.033883 -1.2284E-05 0.887 0.00032157 362.534477337634 24.305 0.74312 21.477 21.091 21.834 -2.8273 149 41 4 0 0 0 0.23628 3 13257 13142;13257;13362 53.833 39.927 1 111240000 29996 7633 19714 20115 35533;35534;35535 35534 0.042891727796586565 KYPHVQKW 8 Unmodified _KYPHVQKW_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7984619140625 2 543.298176 1084.5818 0.13967 7.5882E-05 -0.77449 -0.00042078 -0.63482 -0.0003449 543.7991746355852 24.297 0.38573 21.469 21.248 21.634 -2.8273 32 21 2 0 0 0 0.19688 1 13206 13206 71.134 50.68 1 3955700 29997 7633 19714 20115 35536 35536 0.042891727796586565 KYPHYFPLL 9 Unmodified _KYPHYFPLL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2184753417969 3 393.218332 1176.63317 0.7257 0.00028536 -0.21514 -8.4599E-05 0.51055 0.00020076 393.21822350973235 65.768 0.57196 65.777 65.529 66.101 0.0095596 81 28 4 0 0 0 0.095405 2 35992 35992;36098 24.991 12.816 1 65637000 29998 8173 19715 20116 35537;35538 35537 0.05191496753695901 KYPHYFPLL 9 Unmodified _KYPHYFPLL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3245849609375 2 589.32386 1176.63317 0.88763 0.0005231 -0.49946 -0.00029434 0.38817 0.00022876 589.3234396058166 65.742 0.44195 65.751 65.551 65.993 0.0095596 70 21 4 0 0 0 0.016184 2 35994 35994;36100 67.344 30.838 1 43311000 29999 8173 19715 20116 35539;35540 35539 0.05191496753695901 KYPHYFPLL 9 Unmodified _KYPHYFPLL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2188110351562 3 393.218332 1176.63317 1.4205 0.00055857 0.03513 1.3814E-05 1.4556 0.00057238 393.21816999506353 96.106 0.55882 89.93 89.73 90.289 -6.1757 116 33 4 0 0 0 0.095405 3 63703 63571;63703;63829 26.268 12.816 1 168630000 30000 8173 19715 20116 35541;35542;35543 35542 0.05191496753695901 KYPHYFPLL 9 Unmodified _KYPHYFPLL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3245239257812 2 589.32386 1176.63317 1.0769 0.00063466 0.60666 0.00035752 1.6836 0.00099218 589.3240412737845 96.066 0.55708 89.89 89.748 90.305 -6.1757 107 33 4 0 0 0 0.010877 3 63704 63579;63704;63830 77.984 41.478 1 177560000 30001 8173 19715 20116 35544;35545;35546 35545 0.05191496753695901 KYPHYFPVM 9 Oxidation (M) _KYPHYFPVM(Oxidation (M))_ KYPHYFPVM(1) KYPHYFPVM(60) 0 0 1 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2920532226562 2 599.291702 1196.56885 -0.14922 -8.9423E-05 -0.63721 -0.00038188 -0.78643 -0.0004713 599.2914001621883 41.565 0.26514 41.262 41.047 41.312 -0.30304 20 11 2 0 0 0 0.023164 1 22020 22020 60.39 44.24 1 5971200 30002 3691 19716 20117 35547 35547 647 -0.0215702639477513 KYPHYFPVM 9 Oxidation (M) _KYPHYFPVM(Oxidation (M))_ KYPHYFPVM(1) KYPHYFPVM(78) 0 0 1 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2921142578125 2 599.291702 1196.56885 -0.12673 -7.595E-05 -0.10055 -6.0258E-05 -0.22728 -0.00013621 599.2915845408047 41.391 0.60293 41.39 40.97 41.573 -0.0017929 59 28 3 0 0 0 0.010877 2 22064 21960;22064 77.984 45.679 1 6455800 30003 3691 19716 20117 35548;35549 35549 647 -0.0215702639477513 KYPHYFPVM 9 Oxidation (M) _KYPHYFPVM(Oxidation (M))_ KYPHYFPVM(1) KYPHYFPVM(89) 0 0 1 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2890014648438 2 599.291702 1196.56885 0.12812 7.6782E-05 -0.1506 -9.0251E-05 -0.022475 -1.3469E-05 599.2913878084228 45.894 0.65182 40.939 40.524 41.176 -4.9549 89 43 3 0 0 0 0.0086179 2 28101 28101;28244 101.72 74.838 1 21019000 30004 3691 19716 20117 35550;35551 35550 647 -0.0215702639477513 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5311584472656 3 394.531922 1180.57394 0.32124 0.00012674 -0.91765 -0.00036204 -0.59641 -0.0002353 394.53152199576516 52.118 0.31423 52.059 51.896 52.21 -0.058914 35 14 3 0 0 0 0.30562 1 28220 28220 16.149 13.518 1 3275900 30005 3691 19716 20118 35552 35552 -0.009127225321435617 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.2945556640625 2 591.294245 1180.57394 NaN NaN NaN NaN NaN NaN NaN 52.113 1 52.055 51.555 52.555 -0.058918 0 0 0 0.15618 1 28225 28225 36.044 20.197 1 30006 3691 19716 20118 35553 35553 -0.009127225321435617 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2951049804688 2 591.294245 1180.57394 0.77249 0.00045677 0.11589 6.8527E-05 0.88838 0.0005253 591.2947401512904 57.141 0.42854 51.164 50.957 51.386 -5.9769 35 24 2 0 0 0 0.010877 2 36517 36517;36644 77.984 55.326 1 26729000 30007 3691 19716 20118 35554;35555 35554 -0.009127225321435617 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.86572265625 3 394.531922 1180.57394 1.1219 0.00044263 -0.16348 -6.4498E-05 0.95842 0.00037813 394.5319491311631 57.169 0.40009 51.141 50.956 51.356 -6.0275 35 22 2 0 0 0 0.087258 2 36645 36518;36645 32.786 27.383 1 26076000 30008 3691 19716 20118 35556;35557 35557 -0.009127225321435617 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.53271484375 3 394.531922 1180.57394 1.1827 0.00046662 0.018666 7.3644E-06 1.2014 0.00047398 394.5318640900632 83.815 1.0914 77.639 76.941 78.033 -6.1757 103 57 2 0 0 0 0.095405 4 54891 54891;55017;55140;55268 24.991 18.757 1 29313000 30009 3691 19716 20118 35558;35559;35560;35561 35558 -0.009127225321435617 KYPHYFPVM 9 Unmodified _KYPHYFPVM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2958984375 2 591.294245 1180.57394 0.83361 0.00049291 -0.29167 -0.00017246 0.54194 0.00032045 591.2946911195872 83.688 1.0892 77.512 76.924 78.013 -6.1757 112 57 3 0 0 0 0.0086179 4 55189 54939;55062;55189;55320 101.72 77.701 1 29415000 30010 3691 19716 20118 35562;35563;35564;35565 35564 -0.009127225321435617 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.305419921875 2 577.305667 1152.59678 -0.12877 -7.434E-05 0.5464 0.00031544 0.41763 0.0002411 577.3058802382805 51.424 0.24299 51.01 50.856 51.099 -0.41351 22 12 2 0 0 0 0.07087 1 27732 27732 39.95 18.413 1 15611000 30011 3879 19717 20119 35566 35566 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3067626953125 2 577.305667 1152.59678 0.47979 0.00027699 0.071234 4.1124E-05 0.55103 0.00031811 577.3056512121642 50.986 0.36124 50.933 50.766 51.127 -0.053871 59 17 5 0 0 0 0.0085386 2 27544 27544;27643 100.09 67.305 1 68254000 30012 3879 19717 20119 35567;35568 35567 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2062072753906 3 385.206203 1152.59678 0.17484 6.7348E-05 0.1743 6.7142E-05 0.34914 0.00013449 385.2062193166406 50.986 0.34355 50.932 50.803 51.147 -0.053871 41 16 3 0 0 0 0.30562 1 27559 27559 11.495 3.8858 1 24417000 30013 3879 19717 20119 35569 35569 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.306396484375 2 577.305667 1152.59678 0.38272 0.00022095 -0.076737 -4.4301E-05 0.30598 0.00017665 577.3056574377193 56.247 0.39919 50.27 50.067 50.466 -5.9769 55 22 4 0 0 0 0.0081887 2 35960 35816;35960 93.166 53.216 1 92894000 30014 3879 19717 20119 35570;35571 35571 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2060546875 3 385.206203 1152.59678 0.73973 0.00028495 0.083207 3.2052E-05 0.82294 0.000317 385.20615934385506 56.234 0.38483 50.257 50.081 50.466 -5.9769 33 21 2 0 0 0 0.39863 1 35853 35853 12.241 9.1684 1 24902000 30015 3879 19717 20119 35572 35572 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3056640625 2 577.305667 1152.59678 1.3931 0.00080425 -1.292 -0.00074586 0.10114 5.8387E-05 577.304229369472 79.401 1.13 73.225 72.647 73.777 -6.1757 141 65 3 0 0 0 0.0089732 4 52044 51798;51923;52044;52183 86.332 49.826 1 70847000 30016 3879 19717 20119 35573;35574;35575;35576 35575 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2066650390625 3 385.206203 1152.59678 1.7481 0.00067338 -0.13751 -5.2969E-05 1.6106 0.00062042 385.2058391695272 79.363 1.0971 73.187 72.694 73.791 -6.1757 144 63 4 0 0 0 0.48152 3 51961 51961;52096;52292 5.2969 2.2658 1 26197000 30017 3879 19717 20119 35577;35578;35579 35577 0.026586198569930275 KYPKVWEGF 9 Unmodified _KYPKVWEGF_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF;ENST00000598364.1_1_19:46318820-46320367:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MSMS AL20221201_MKP_PDAC_01 4 577.3055419921875 2 577.305667 1152.59678 NaN NaN NaN NaN NaN NaN NaN 79.787 1 73.611 73.111 74.111 -6.1757 0 0 0 0.028685 1 52312 52312 67.838 37.202 1 30018 3879 19717 20119 35580 35580 0.026586198569930275 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2375183105469 3 368.237615 1101.69102 -0.42914 -0.00015803 0.43699 0.00016092 0.0078496 2.8905E-06 368.23773628462476 56.143 0.7736 56.074 55.626 56.4 -0.068737 91 40 3 0 0 0 0.0082661 3 30559 30349;30559;30675 74.2 22.784 1 10494000 30019 3230 19718 20120 35581;35582;35583 35582 0.14423758679117782 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8534545898438 2 551.852784 1101.69102 -0.33162 -0.000183 0.12296 6.7854E-05 -0.20866 -0.00011515 551.8529067822835 56.165 0.87206 56.096 55.607 56.479 -0.068737 104 45 3 0 0 0 0.040683 2 30391 30391;30592 49.554 3.8547 1 16567000 30020 3230 19718 20120 35584;35585 35584 0.14423758679117782 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.85302734375 2 551.852784 1101.69102 1.1848 0.00065382 -0.46961 -0.00025916 0.71516 0.00039466 551.8524364540905 86.549 0.91568 80.373 79.727 80.643 -6.1757 131 49 3 0 0 0 0.017075 2 56940 56680;56940 66.457 12.022 1 34950000 30021 3230 19718 20120 35586;35587 35587 0.14423758679117782 KYPLLISRI 9 Unmodified _KYPLLISRI_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ENST00000474428.6_1_1:155922555-155932010:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2383117675781 3 368.237615 1101.69102 1.8076 0.00066564 -0.018722 -6.8942E-06 1.7889 0.00065875 368.2376033681455 86.564 1.0404 80.388 79.674 80.715 -6.1757 143 56 3 0 0 0 0.0088174 1 57107 57107 83.429 24.06 1 48351000 30022 3230 19718 20120 35588 35588 0.14423758679117782 KYPLLLDNI 9 Unmodified _KYPLLLDNI_ 0 0 0 ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12 ENST00000529970.5_1_11:120278459-120348246:+|nuORF ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8214721679688 2 544.82115 1087.62775 0.46288 0.00025219 -0.059247 -3.2279E-05 0.40363 0.00021991 544.8211442103157 73.381 0.82256 72.905 72.429 73.252 -0.47588 112 36 4 0 0 0 0.0082353 4 40218 40005;40109;40218;40323 96.111 21.182 1 10950000 30023 9882 19719 20121 35589;35590;35591;35592 35591 0.08743773171227076 KYPLLLDNI 9 Unmodified _KYPLLLDNI_ 0 0 0 ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12 ENST00000529970.5_1_11:120278459-120348246:+|nuORF ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8221435546875 2 544.82115 1087.62775 0.11018 6.003E-05 -0.13108 -7.1416E-05 -0.020898 -1.1386E-05 544.8206570143349 72.772 0.4774 72.813 72.571 73.048 0.041725 36 22 2 0 0 0 0.14 1 40186 40186 29.082 3.6823 1 3634200 30024 9882 19719 20121 35593 35593 0.08743773171227076 KYPLLLDNI 9 Unmodified _KYPLLLDNI_ 0 0 0 ENST00000529970.5_1_11:120278459-120348246:+|nuORF;nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12 ENST00000529970.5_1_11:120278459-120348246:+|nuORF ENST00000529970.5_1_11:120278459-120348246:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8221435546875 2 544.82115 1087.62775 0.8721 0.00047514 1.1492 0.00062611 2.0213 0.0011012 544.8213760861755 91.464 1.362 85.288 84.444 85.806 -6.1757 219 78 4 0 0 0 0.0082661 5 60352 60221;60352;60474;60597;60716 103.35 27.256 1 32010000 30025 9882 19719 20121 35594;35595;35596;35597;35598 35595 0.08743773171227076 KYPLLLESI 9 Unmodified _KYPLLLESI_ 0 0 0 ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF ENSG00000132694|ENST00000368194|ARHGEF11 ENSG00000132694|ENST00000368194|ARHGEF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3238525390625 2 538.323525 1074.6325 0.26864 0.00014461 0.60525 0.00032582 0.87389 0.00047043 538.3236783298036 76.003 0.69728 75.524 75.187 75.885 -0.47945 85 29 4 0 0 0 0.091924 1 41691 41691 46.021 17.534 1 2772600 30026 4441 19720 20122 35599 35599 0.09816657313990618 KYPLLLESI 9 Unmodified _KYPLLLESI_ 0 0 0 ENSG00000132694|ENST00000368194|ARHGEF11;nc|ENSG00000132694|O15085|ARHGEF11;ENST00000461678.1_1_1:156915777-156917159:-|nuORF ENSG00000132694|ENST00000368194|ARHGEF11 ENSG00000132694|ENST00000368194|ARHGEF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3235473632812 2 538.323525 1074.6325 1.169 0.00062928 0.016419 8.8386E-06 1.1854 0.00063811 538.3232443276471 95.96 0.47794 89.784 89.496 89.974 -6.1757 67 29 3 0 0 0 0.047714 1 63557 63557 58.679 14.821 1 36562000 30027 4441 19720 20122 35600 35600 0.09816657313990618 KYPLLLKEL 9 Unmodified _KYPLLLKEL_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.8546142578125 2 558.854993 1115.69543 0.54786 0.00030618 -0.29167 -0.000163 0.2562 0.00014318 558.8547933667912 57.866 0.73324 57.376 57.046 57.779 -0.48974 88 35 3 0 0 0 0.01861 3 31438 31335;31438;31538 70.332 0 1 7525400 30028 3746;5779 19721 20123 35601;35602;35603 35602 0.14221223102049407 KYPLLLKEL 9 Unmodified _KYPLLLKEL_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8557739257812 2 558.854993 1115.69543 1.1119 0.00062138 0.049864 2.7867E-05 1.1617 0.00064925 558.8549298630431 57.54 0.93277 57.474 56.958 57.89 -0.066036 132 46 4 0 0 0 0.0081437 4 31331 31124;31232;31331;31431 85.642 0 1 15264000 30029 3746;5779 19721 20123 35604;35605;35606;35607 35606 0.14221223102049407 KYPLLLKEL 9 Unmodified _KYPLLLKEL_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.9054870605469 3 372.905754 1115.69543 0.73199 0.00027296 0.20595 7.6799E-05 0.93794 0.00034976 372.90580411373145 57.531 0.7976 57.465 56.998 57.795 -0.066032 97 39 3 0 0 0 0.39143 1 31162 31162 12.873 0 1 6765700 30030 3746;5779 19721 20123 35608 35608 0.14221223102049407 KYPLLLKEL 9 Unmodified _KYPLLLKEL_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.855712890625 2 558.854993 1115.69543 1.2327 0.00068893 -0.0064263 -3.5914E-06 1.2263 0.00068533 558.8549908901035 88.818 1.1705 82.642 81.956 83.127 -6.1757 149 65 3 0 0 0 0.0090383 4 58356 58356;58485;58604;58728 103.42 0 1 43908000 30031 3746;5779 19721 20123 35609;35610;35611;35612 35609 0.14221223102049407 KYPLLLKEL 9 Unmodified _KYPLLLKEL_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.9061889648438 3 372.905754 1115.69543 1.6266 0.00060656 0.080429 2.9993E-05 1.707 0.00063656 372.90568682445587 88.64 1.0291 82.464 81.993 83.022 -6.1757 144 57 3 0 0 0 0.29507 3 58580 58458;58580;58699 17.443 0 1 35406000 30032 3746;5779 19721 20123 35613;35614;35615 35614 0.14221223102049407 KYPLLLQSI 9 Unmodified _KYPLLLQSI_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;ENST00000595897.5_1_19:42402462-42407822:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.8321533203125 2 537.831517 1073.64848 0.092792 4.9906E-05 -2.054 -0.0011047 -1.9612 -0.0010548 537.8314406532561 72.718 0.95702 72.76 72.151 73.108 0.041725 156 45 4 0 0 0 0.0085164 3 39899 39797;39899;39998 99.799 28.665 1 55894000 30033 1198 19722 20124 35616;35617;35618 35617 0.11460363550895636 KYPLLLQSI 9 Unmodified _KYPLLLQSI_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;ENST00000595897.5_1_19:42402462-42407822:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8323974609375 2 537.831517 1073.64848 0.079856 4.2949E-05 0.51888 0.00027907 0.59873 0.00032202 537.8317442422874 93.186 1.3703 87.01 86.252 87.622 -6.1757 225 90 3 0 0 0 0.0014543 5 61943 61421;61556;61685;61813;61943 136.33 54.72 1 138550000 30034 1198 19722 20124 35619;35620;35621;35622;35623 35623 0.11460363550895636 KYPLLLREL 9 Unmodified _KYPLLLREL_ 0 0 0 ENSG00000156299|ENST00000541036|TIAM1;nc|ENSG00000156299|Q13009-2|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 ENSG00000156299|ENST00000541036|TIAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8582153320312 2 572.858067 1143.70158 NaN NaN NaN NaN NaN NaN NaN 59.03 1 58.97 58.47 59.47 -0.060719 0 0 0 0.75456 1 32164 32164 7.609 0 1 30035 6446 19723 20125 35624 35624 0.13547741333559316 KYPLNLYLL 9 Unmodified _KYPLNLYLL_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8399658203125 2 568.839342 1135.66413 0.98859 0.00056235 -0.16604 -9.4448E-05 0.82256 0.0004679 568.8391799859468 98.541 0.28664 92.365 92.221 92.508 -6.1757 63 20 4 0 0 0 0.023164 1 65336 65336 60.39 12.044 1 353610000 30036 6419 19724 20126 35625 35625 0.10172650067920586 KYPLNLYLLF 10 Unmodified _KYPLNLYLLF_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.8775024414062 2 642.373549 1282.73255 4.3077 0.0027672 -0.41594 -0.00026719 3.8918 0.0025 642.3728544788436 99.231 0.28106 99.202 99.051 99.332 -0.028282 16 9 3 0 0 0 0.1028 1 55119 55119 46.021 20.622 1 5908200 30037 6419 19725 20127 35626 35626 0.10248894647770612 KYPLNLYLLF 10 Unmodified _KYPLNLYLLF_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS AL20221201_MKP_PDAC_01 4 642.3737182617188 2 642.373549 1282.73255 NaN NaN NaN NaN NaN NaN NaN 100.91 1 94.736 94.236 95.236 -6.1757 0 0 0 0.014371 1 67602 67602 68.081 8.7123 1 30038 6419 19725 20127 35627 35627 0.10248894647770612 KYPNLLNQL 9 Unmodified _KYPNLLNQL_ 0 0 0 ENSG00000168522|ENST00000302279|FNTA;nc|ENSG00000168522|P49354-2|FNTA;ENST00000528400.1_1_8:42939784-42940422:+|nuORF;ENST00000530657.1_1_11:85906626-85907241:+|nuORF ENSG00000168522|ENST00000302279|FNTA ENSG00000168522|ENST00000302279|FNTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8170166015625 2 551.816399 1101.61824 0.31325 0.00017286 -0.12262 -6.7661E-05 0.19064 0.0001052 551.8164483053063 62.035 0.3929 62.002 61.808 62.201 -0.032787 33 19 2 0 0 0 0.01958 1 33875 33875 81.613 24.142 1 4289700 30039 7774 19726 20128 35628 35628 0.07150004885693306 KYPNMFKKI 9 Oxidation (M) _KYPNM(Oxidation (M))FKKI_ KYPNM(1)FKKI KYPNM(53)FKKI 0 0 1 nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;ENST00000492628.1_1_7:129040195-129045055:+|nuORF nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5553283691406 3 395.554727 1183.64235 0.0086815 3.434E-06 1.2182 0.00048188 1.2269 0.00048531 395.5552013754006 21.949 0.35527 21.963 21.778 22.134 0.013796 51 16 4 0 0 0 0.033587 1 11271 11271 53.404 40.531 1 5663500 30040 6587 19727 20129 35629 35629 1152 0.05787522047717175 KYPNMFKKI 9 Oxidation (M) _KYPNM(Oxidation (M))FKKI_ KYPNM(1)FKKI KYPNM(46)FKKI 0 0 1 nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;ENST00000492628.1_1_7:129040195-129045055:+|nuORF nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5549621582031 3 395.554727 1183.64235 0.42846 0.00016948 0.27559 0.00010901 0.70405 0.00027849 395.55483112810845 24.184 0.36033 21.357 21.159 21.519 -2.8273 53 19 3 0 0 0 0.047714 1 13201 13201 45.74 28.297 1 13739000 30041 6587 19727 20129 35630 35630 1152 0.05787522047717175 KYPNMFKKI 9 Unmodified _KYPNMFKKI_ 0 0 0 nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;ENST00000492628.1_1_7:129040195-129045055:+|nuORF nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2234802246094 3 390.223088 1167.64744 1.4012 0.00054677 -0.029119 -1.1363E-05 1.3721 0.00053541 390.2232173015714 36.088 0.67994 31.896 31.457 32.137 -4.1928 103 41 3 0 0 0 0.0090948 3 21162 20897;21024;21162 76.825 58.452 1 30145000 30042 6587 19727 20130 35631;35632;35633 35633 0.07031825910348743 KYPNRGFPKI 10 Unmodified _KYPNRGFPKI_ 0 0 0 nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR nc|ENSG00000116984|Q99707-2|MTR nc|ENSG00000116984|Q99707-2|MTR MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2372741699219 3 407.236385 1218.68733 1.4188 0.00057777 0.21821 8.8864E-05 1.637 0.00066663 407.23642367483745 34.046 0.451 30.06 29.805 30.256 -3.9853 39 24 3 0 0 0 0.19566 1 19551 19551 34.222 13.351 1 8818200 30043 3272 19728 20131 35634 35634 0.0867308890528875 KYPNVDARL 9 Unmodified _KYPNVDARL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2980346679688 2 538.298373 1074.58219 -0.79238 -0.00042654 0.43266 0.0002329 -0.35972 -0.00019364 538.298414834417 32.765 0.38968 32.765 32.618 33.008 0 52 19 4 0 0 0 0.17124 2 17209 17103;17209 33.445 11.698 1 11589000 30044 5897 19729 20132 35635;35636 35636 0.04788547708835722 KYPNVDARL 9 Unmodified _KYPNVDARL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.2015075683594 3 359.201341 1074.58219 -0.96878 -0.00034799 0.33893 0.00012174 -0.62984 -0.00022624 359.2014716535542 32.769 0.40811 32.769 32.58 32.988 0 49 20 3 0 0 0 0.040733 1 17114 17114 49.527 18.824 1 6902200 30045 5897 19729 20132 35637 35637 0.04788547708835722 KYPNVDARL 9 Unmodified _KYPNVDARL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2992553710938 2 538.298373 1074.58219 -0.36361 -0.00019573 0.71172 0.00038312 0.34811 0.00018739 538.2987274747401 32.9 0.29109 32.74 32.622 32.913 -0.15918 21 11 2 0 0 0 0.20389 1 17144 17144 29.841 7.1043 1 2612200 30046 5897 19729 20132 35638 35638 0.04788547708835722 KYPNVDARL 9 Unmodified _KYPNVDARL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2015075683594 3 359.201341 1074.58219 1.6395 0.0005889 -1.134 -0.00040732 0.50549 0.00018157 359.20102933054 36.895 0.43901 32.612 32.371 32.81 -4.2835 65 26 3 0 0 0 0.060956 2 21617 21482;21617 42.312 18.511 1 38113000 30047 5897 19729 20132 35639;35640 35640 0.04788547708835722 KYPNVDARL 9 Unmodified _KYPNVDARL_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.298583984375 2 538.298373 1074.58219 0.85225 0.00045877 -0.18593 -0.00010008 0.66632 0.00035868 538.29835701635 36.89 0.51337 32.607 32.297 32.81 -4.2835 68 31 3 0 0 0 0.20389 1 21677 21677 29.841 7.1043 1 40744000 30048 5897 19729 20132 35641 35641 0.04788547708835722 KYPNVFKKI 9 Unmodified _KYPNVFKKI_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5653991699219 3 379.565732 1135.67537 -0.066966 -2.5418E-05 0.37061 0.00014067 0.30365 0.00011525 379.56583461314125 32.803 1.1705 32.833 32.216 33.387 0.029743 147 50 4 0 0 0 0.0082661 5 17123 17018;17123;17226;17324;17432 74.2 49.209 1 14310000 30049 7793 19730 20133 35642;35643;35644;35645;35646 35643 0.11295472162078113 KYPNVFKKI 9 Unmodified _KYPNVFKKI_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5664367675781 3 379.565732 1135.67537 1.3041 0.000495 -0.1833 -6.9574E-05 1.1208 0.00042543 379.5656363536167 36.842 1.2809 32.558 31.839 33.12 -4.2835 172 78 4 0 0 0 0.018301 4 21186 21186;21310;21434;21558 51.415 43.806 1 60446000 30050 7793 19730 20133 35647;35648;35649;35650 35647 0.11295472162078113 KYPNVFKKI 9 Unmodified _KYPNVFKKI_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8451538085938 2 568.844959 1135.67537 1.0673 0.0006071 -0.49942 -0.00028409 0.56784 0.00032301 568.8448629505496 36.773 0.31387 32.49 32.422 32.736 -4.2835 24 18 2 0 0 0 0.047788 1 21496 21496 45.7 26.443 1 5103700 30051 7793 19730 20133 35651 35651 0.11295472162078113 KYPPAVQHL 9 Unmodified _KYPPAVQHL_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7980346679688 2 526.798009 1051.58147 0.042137 2.2198E-05 0.29967 0.00015787 0.34181 0.00018006 526.7978537581422 29.313 0.22937 29.313 29.202 29.432 0 16 10 2 0 0 0 0.5029 1 15166 15166 7.2892 0.56607 1 504840 30052 8577 19731 20134 35652 35652 0.05773753059793307 KYPPAVQHL 9 Unmodified _KYPPAVQHL_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5354919433594 3 351.534431 1051.58147 1.7248 0.00060634 1.0798 0.00037959 2.8046 0.00098593 351.5346512132846 32.384 0.43133 28.527 28.383 28.814 -3.8562 37 23 2 0 0 0 0.070838 1 18584 18584 36.506 25.011 1 9192400 30053 8577 19731 20134 35653 35653 0.05773753059793307 KYPPSRAQ 8 Unmodified _KYPPSRAQ_ 0 0 0 ENST00000556241.5_1_14:76088442-76101338:+|nuORF;nc|ENSG00000119686|Q9UPI3-2|FLVCR2;ENSG00000119686|ENST00000238667|FLVCR2 ENST00000556241.5_1_14:76088442-76101338:+|nuORF ENST00000556241.5_1_14:76088442-76101338:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7596740722656 2 473.758884 945.503215 -0.25349 -0.00012009 -0.74227 -0.00035166 -0.99576 -0.00047175 473.75849420851154 20.409 0.21908 20.409 20.296 20.515 0 93 33 3 0 0 0 0.50673 1 10231 10231 34.102 3.8776 1 15393000 30054 3456 19732 20135 35654 35654 0.02828320474566226 KYPPSRAQ 8 Unmodified _KYPPSRAQ_ 0 0 0 ENST00000556241.5_1_14:76088442-76101338:+|nuORF;nc|ENSG00000119686|Q9UPI3-2|FLVCR2;ENSG00000119686|ENST00000238667|FLVCR2 ENST00000556241.5_1_14:76088442-76101338:+|nuORF ENST00000556241.5_1_14:76088442-76101338:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7602233886719 2 473.758884 945.503215 0.11397 5.3997E-05 -0.14826 -7.0241E-05 -0.034289 -1.6245E-05 473.75878973446163 23.179 0.47722 20.4 20.166 20.644 -2.7784 103 39 3 0 0 0 0.58902 1 12652 12652 26.884 3.7352 1 75811000 30055 3456 19732 20135 35655 35655 0.02828320474566226 KYPQAGAG 8 Unmodified _KYPQAGAG_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP;ENST00000504100.1_1_4:111480866-111482684:+|nuORF ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2054138183594 2 396.205953 790.397353 -1.1617 -0.00046026 0.09793 3.88E-05 -1.0637 -0.00042146 396.2058406810592 32.274 0.1904 32.274 32.164 32.355 0 16 9 2 0 0 0 0.63229 1 16850 16850 23.148 5.0134 1 3385400 30056 5107 19733 20136 35656 35656 -0.006230153709111619 KYPQAIYTL 9 Unmodified _KYPQAIYTL_ 0 0 0 ENSG00000137492|ENST00000260045|THAP12;ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000489193.1_1_3:86062505-86063063:+|nuORF;nc|ENSG00000137492|O43422-2|THAP12 ENSG00000137492|ENST00000260045|THAP12 ENSG00000137492|ENST00000260045|THAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.8062744140625 2 548.8055 1095.59645 0.4105 0.00022528 -1.0855 -0.00059572 -0.675 -0.00037044 548.8059561356059 53.53 0.29909 53.078 52.943 53.242 -0.45173 29 14 3 0 0 0 0.03568 1 28947 28947 52.268 17.867 1 5817000 30057 4939 19734 20137 35657 35657 0.052472001371370425 KYPQAIYTL 9 Unmodified _KYPQAIYTL_ 0 0 0 ENSG00000137492|ENST00000260045|THAP12;ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000489193.1_1_3:86062505-86063063:+|nuORF;nc|ENSG00000137492|O43422-2|THAP12 ENSG00000137492|ENST00000260045|THAP12 ENSG00000137492|ENST00000260045|THAP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8076782226562 2 548.8055 1095.59645 1.4107 0.00077418 2.2982 0.0012613 3.7089 0.0020354 548.8055032292059 58.843 0.39243 52.768 52.527 52.92 -6.0745 46 21 3 0 0 0 0.011968 2 37647 37647;37774 74.929 24.996 1 42768000 30058 4939 19734 20137 35658;35659 35658 0.052472001371370425 KYPQCLHML 9 Carbamidomethyl (C) _KYPQC(Carbamidomethyl (C))LHML_ KYPQC(1)LHML KYPQC(54)LHML 0 1 0 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.1999816894531 3 397.200067 1188.57837 0.85895 0.00034118 -0.73802 -0.00029314 0.12093 4.8033E-05 397.1999730043749 45.645 0.58678 40.69 40.477 41.064 -4.9549 94 38 4 0 0 0 0.032796 1 27965 27965 53.833 36.39 1 45966000 30059 2586 19735 20138 35660 35660 261 -0.008375813808925159 KYPQCLHML 9 Carbamidomethyl (C) _KYPQC(Carbamidomethyl (C))LHML_ KYPQC(1)LHML KYPQC(85)LHML 0 1 0 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 ENSG00000108590|ENST00000225728|MED31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2970581054688 2 595.296462 1188.57837 0.3581 0.00021317 -1.4385 -0.00085634 -1.0804 -0.00064316 595.2969336627132 45.704 0.49483 40.749 40.504 40.999 -4.9549 65 32 3 0 0 0 0.0090851 1 28053 28053 85.357 61.336 1 22890000 30060 2586 19735 20138 35661 35661 261 -0.008375813808925159 KYPQLLPGI 9 Unmodified _KYPQLLPGI_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32878355-32891076:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.810302734375 2 514.810585 1027.60662 0.090593 4.6638E-05 0.77572 0.00039935 0.86632 0.00044599 514.8105854628569 69.113 0.64754 68.633 68.202 68.849 -0.48071 75 28 4 0 0 0 0.038285 1 37679 37679 50.855 10.898 1 2823300 30061 1967 19736 20139 35662 35662 0.09391807862357382 KYPQLLPGI 9 Unmodified _KYPQLLPGI_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32878355-32891076:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.8111572265625 2 514.810585 1027.60662 0.71743 0.00036934 -0.60809 -0.00031305 0.10934 5.6289E-05 514.8100345312483 68.573 0.85638 68.598 67.983 68.84 0.025154 119 41 4 0 0 0 0.013472 3 37559 37559;37660;37765 70.716 22.37 1 15845000 30062 1967 19736 20139 35663;35664;35665 35663 0.09391807862357382 KYPQLLPGI 9 Unmodified _KYPQLLPGI_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32878355-32891076:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.810791015625 2 514.810585 1027.60662 0.64128 0.00033014 -1.2853 -0.00066168 -0.64401 -0.00033155 514.8095774990587 81.8 1.4932 75.625 75.15 76.643 -6.1757 167 84 3 0 0 0 0.023164 4 54024 53887;54024;54154;54305 60.39 21.427 1 27595000 30063 1967 19736 20139 35666;35667;35668;35669 35667 0.09391807862357382 KYPQSPRA 8 Unmodified _KYPQSPRA_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000521499.5_1_8:62489324-62489399:-|nuORF nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7588500976562 2 473.758884 945.503215 0.11397 5.3997E-05 -0.14826 -7.0241E-05 -0.034289 -1.6245E-05 473.75878973446163 23.179 0.47722 20.4 20.166 20.644 -2.7784 103 39 3 0 0 0 0.55032 1 12541 12541 30.225 0 1 75811000 30064 10082 19737 20140 35670 35670 0.02828320474566226 KYPSETREI 9 Unmodified _KYPSETREI_ 0 0 0 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 nc|ENSG00000165185|Q8N8K9-2|KIAA1958 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7891235351562 2 561.793121 1121.57169 1.195 0.00067135 -4.0451 -0.0022725 -2.8501 -0.0016012 561.7908328301504 21.876 0.4383 19.142 18.955 19.394 -2.7348 56 24 3 0 0 0 0.023481 1 11812 11812 60.074 5.3004 1 6903600 30065 16350 19738 20141 35671 35671 0.0157652026375672 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2973022460938 2 566.29731 1130.58007 0.14102 7.9861E-05 0.42102 0.00023843 0.56205 0.00031829 566.2973980406329 87.394 0.63684 87.452 87.164 87.801 0.05822 118 30 5 0 0 0 0.009483 3 48580 48472;48580;48698 81.89 56.491 1 842670000 30066 4745 19739 20142 35672;35673;35674 35673 0.020001189710455947 KYPSPFFVF 9 Unmodified _KYPSPFFVF_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.297607421875 2 566.29731 1130.58007 1.1777 0.00066695 -1.1765 -0.00066624 0.0012573 7.1202E-07 566.2964117997803 99.364 0.38454 93.189 93.048 93.432 -6.1757 97 24 7 0 0 0 0.023481 2 66071 66071;66247 60.074 35.4 1 7515899999.999999 30067 4745 19739 20142 35675;35676 35675 0.020001189710455947 KYPVEWAKF 9 Unmodified _KYPVEWAKF_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8778991699219 3 389.878087 1166.61243 0.60417 0.00023555 -0.91733 -0.00035764 -0.31316 -0.00012209 389.87756071393494 52.354 0.3992 52.295 52.087 52.486 -0.058918 32 19 2 0 0 0 0.03568 2 28434 28326;28434 47.594 39.439 1 5320800 30068 2207 19740 20143 35677;35678 35678 0.035789063740367055 KYPVEWAKF 9 Unmodified _KYPVEWAKF_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3135986328125 2 584.313492 1166.61243 1.0716 0.00062613 -1.3246 -0.00077398 -0.25304 -0.00014786 584.3126983150217 52.358 0.39893 52.299 52.127 52.526 -0.058918 32 19 2 0 0 0 0.01958 2 28432 28333;28432 63.961 43.507 1 7870500 30069 2207 19740 20143 35679;35680 35680 0.035789063740367055 KYPVEWAKF 9 Unmodified _KYPVEWAKF_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MSMS AL20221201_MKP_PDAC_01 4 389.8790893554688 3 389.878087 1166.61243 NaN NaN NaN NaN NaN NaN NaN 57.421 1 51.393 50.893 51.893 -6.0275 0 0 0 0.0083389 1 36723 36723 76.825 53.035 1 30070 2207 19740 20143 35681 35681 0.035789063740367055 KYPVEWAKF 9 Unmodified _KYPVEWAKF_ 0 0 0 ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A ENSG00000104427|ENST00000263849|ZC2HC1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.313492 1166.61243 0.42721 0.00024962 -2.3305 -0.0013617 -1.9033 -0.0011121 584.3120550824137 52.48 0.1376 52.046 51.964 52.101 -0.43367 -0.12651 -0.001095 NaN 63.961 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1641900 30071 2207 19740 20143 0.035789063740367055 KYPVHIYRL 9 Unmodified _KYPVHIYRL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.9010009765625 3 396.901114 1187.68151 -0.26095 -0.00010357 0.32436 0.00012874 0.063413 2.5169E-05 396.9011002235829 35.795 0.58097 35.82 35.494 36.075 0.024967 80 27 4 0 0 0 0.13231 2 18928 18828;18928 29.841 18.323 1 27458000 30072 9935 19741 20144 35682;35683 35683 0.09517990393601394 KYPVHIYRL 9 Unmodified _KYPVHIYRL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.9017333984375 3 396.901114 1187.68151 0.42997 0.00017066 0.81492 0.00032344 1.2449 0.0004941 396.9015408194056 40.064 0.55979 35.534 35.247 35.806 -4.5294 80 46 2 0 0 0 0.13231 2 23879 23739;23879 29.841 19.69 1 47057000 30073 9935 19741 20144 35684;35685 35685 0.09517990393601394 KYPVHIYRL 9 Unmodified _KYPVHIYRL_ 0 0 0 ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B ENSG00000197275|ENST00000336148|RAD54B MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.9017639160156 3 396.901114 1187.68151 0.82275 0.00032655 -2.2916 -0.00090954 -1.4689 -0.00058299 396.8996635001581 76.332 0.94582 70.157 69.543 70.489 -6.1757 95 51 3 0 0 0 0.27545 3 49987 49755;49876;49987 18.373 10.218 1 42544000 30074 9935 19741 20144 35686;35687;35688 35688 0.09517990393601394 KYPVKEKED 9 Unmodified _KYPVKEKED_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8297729492188 2 568.303321 1134.59209 0.31914 0.00018137 -0.41196 -0.00023412 -0.092823 -5.2751E-05 568.3047115085559 53.161 0.2951 53.098 52.882 53.177 -0.063423 16 14 2 0 0 0 0.21052 1 28814 28814 6.7232 0 1 1243400 30075 1581 19742 20145 35689 35689 0.030176909235706262 KYPVKEKED 9 Unmodified _KYPVKEKED_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000465585.1_1_7:107796889-107818537:-|nuORF nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.303321 1134.59209 0.52999 0.00030119 -0.78604 -0.00044671 -0.25605 -0.00014551 568.3028625084488 52.923 0.14574 52.923 52.836 52.982 0 -0.087281 -7.5076E-05 NaN 6.7232 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 751700 30076 1581 19742 20145 0.030176909235706262 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5692138671875 3 388.569365 1162.68626 0.24818 9.6433E-05 0.35458 0.00013778 0.60275 0.00023421 388.56940813968134 54.838 0.57454 54.771 54.504 55.078 -0.066936 67 28 3 0 0 0 0.040683 3 29685 29685;29785;29894 49.554 30.192 1 4686000 30077 16379 19743 20146 35690;35691;35692 35690 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3508911132812 2 582.350409 1162.68626 0.8255 0.00048073 -0.38448 -0.0002239 0.44101 0.00025683 582.3502112521445 54.917 0.57454 54.848 54.502 55.076 -0.068737 69 28 3 0 0 0 0.040683 2 29796 29686;29796 64.236 37.974 1 5784200 30078 16379 19743 20146 35693;35694 35694 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.9054260253906 3 388.569365 1162.68626 1.2053 0.00046833 -0.36493 -0.0001418 0.84033 0.00032653 388.56931440914406 83.119 0.78281 76.943 76.521 77.304 -6.1757 95 42 3 0 0 0 0.025842 3 54745 54481;54612;54745 57.722 21.216 1 19504000 30079 16379 19743 20146 35695;35696;35697 35697 0.11142874536380987 KYPVLFQRI 9 Unmodified _KYPVLFQRI_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MSMS AL20221201_MKP_PDAC_01 4 388.5695495605469 3 388.569365 1162.68626 NaN NaN NaN NaN NaN NaN NaN 82.688 1 76.512 76.012 77.012 -6.1757 0 0 0 0.43047 1 54327 54327 18.373 0 1 30080 16379 19743 20146 35698 35698 0.11142874536380987 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8419189453125 2 558.842416 1115.67028 0.45689 0.00025533 -0.18097 -0.00010114 0.27592 0.00015419 558.842150855078 46.83 0.31359 46.83 46.544 46.858 0 15 14 2 0 0 0 0.42049 1 25622 25622 11.495 2.9014 1 1764400 30081 10514;2247 19744 20147 35699 35699 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.8421630859375 2 558.842416 1115.67028 0.8552 0.00047792 -0.11343 -6.3391E-05 0.74177 0.00041453 558.8422980159946 47.1 0.68845 46.763 46.327 47.016 -0.33664 91 34 3 0 0 0 0.044296 3 25168 25065;25168;25277 47.594 24.446 1 18366000 30082 10514;2247 19744 20147 35700;35701;35702 35701 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8973388671875 3 372.89737 1115.67028 0.65754 0.0002452 -0.13485 -5.0284E-05 0.52269 0.00019491 372.8973103872955 47.12 0.67334 46.784 46.385 47.058 -0.33664 70 33 3 0 0 0 0.013041 3 25224 25103;25224;25337 57.249 26.546 1 8124500 30083 10514;2247 19744 20147 35703;35704;35705 35704 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8425903320312 2 558.842416 1115.67028 1.6248 0.00090799 -0.78668 -0.00043963 0.8381 0.00046836 558.8418578663732 46.79 0.54526 46.757 46.431 46.976 -0.033417 57 26 3 0 0 0 0.098164 2 25205 25095;25205 33.445 14.188 1 5254600 30084 10514;2247 19744 20147 35706;35707 35707 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8432006835938 2 558.842416 1115.67028 0.73804 0.00041245 0.044802 2.5038E-05 0.78284 0.00043748 558.8422660638496 51.647 0.56155 45.998 45.69 46.251 -5.649 57 35 2 0 0 0 0.069655 2 32541 32420;32541 40.239 20.982 1 81343000 30085 10514;2247 19744 20147 35708;35709 35709 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8980102539062 3 372.89737 1115.67028 1.1357 0.00042349 0.067953 2.534E-05 1.2036 0.00044883 372.8973604131722 51.728 0.49387 46.008 45.701 46.195 -5.7195 52 31 2 0 0 0 0.0044708 2 32491 32491;32627 96.936 39.686 1 59659000 30086 10514;2247 19744 20147 35710;35711 35710 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MSMS AL20221201_MKP_PDAC_01 4 372.8976135253906 3 372.89737 1115.67028 NaN NaN NaN NaN NaN NaN NaN 51.411 1 45.762 45.262 46.262 -5.649 0 0 0 0.10661 1 32348 32348 32.898 17.159 1 30087 10514;2247 19744 20147 35712 35712 0.1170716829947196 KYPVLVERI 9 Unmodified _KYPVLVERI_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.89737 1115.67028 1.2378 0.00046159 -0.72419 -0.00027005 0.51365 0.00019154 372.8969719476211 46.822 0.50671 46.788 46.431 46.938 -0.033417 0.0023695 -0.00046489 NaN 57.249 31 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2075400 30088 10514;2247 19744 20147 0.1170716829947196 KYQAECSQF 9 Carbamidomethyl (C) _KYQAEC(Carbamidomethyl (C))SQF_ KYQAEC(1)SQF KYQAEC(79)SQF 0 1 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7552490234375 2 580.755681 1159.49681 0.42223 0.00024521 -0.20447 -0.00011875 0.21776 0.00012646 580.7557023269222 27.841 0.68939 24.693 24.429 25.119 -3.1482 124 36 4 0 0 0 0.010611 1 15736 15736 78.728 40.552 1 96814000 30089 1675 19745 20148 35713 35713 163 -0.07655985539145149 KYQAKEPL 8 Unmodified _KYQAKEPL_ 0 0 0 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 ENSG00000165509|ENST00000298296|MAGEC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7772216796875 2 488.776742 975.538931 0.52773 0.00025794 0.077766 3.801E-05 0.6055 0.00029595 488.77661808123935 36.259 0.2443 36.259 36.186 36.43 0 17 11 2 0 0 0 0.19493 1 19219 19219 71.922 10.565 1 6312700 30090 7351 19746 20149 35714 35714 0.05018357931567152 KYQASHPNL 9 Unmodified _KYQASHPNL_ 0 0 0 ENSG00000099940|ENST00000215730|SNAP29 ENSG00000099940|ENST00000215730|SNAP29 ENSG00000099940|ENST00000215730|SNAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.275634765625 2 529.274898 1056.53524 -0.16844 -8.9153E-05 0.40535 0.00021454 0.23691 0.00012539 529.2752204212234 19.325 0.16913 19.325 19.248 19.417 0 22 10 3 0 0 0 0.047788 1 9650 9650 45.7 13.394 1 1627500 30091 1722 19747 20150 35715 35715 0.009236881576953238 KYQASHPNL 9 Unmodified _KYQASHPNL_ 0 0 0 ENSG00000099940|ENST00000215730|SNAP29 ENSG00000099940|ENST00000215730|SNAP29 ENSG00000099940|ENST00000215730|SNAP29 MSMS AL20221201_MKP_PDAC_01 4 529.2747802734375 2 529.274898 1056.53524 NaN NaN NaN NaN NaN NaN NaN 21.124 1 18.431 17.931 18.931 -2.693 0 0 0 0.0083006 1 11284 11284 96.367 48.021 1 30092 1722 19747 20150 35716 35716 0.009236881576953238 KYQATNCCFS 10 Unmodified _KYQATNCCFS_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8320922851562 3 388.831931 1163.47396 -0.61526 -0.00023923 0.78458 0.00030507 0.16932 6.5836E-05 388.83262695419785 28.724 0.19787 28.724 28.641 28.839 0 19 9 3 0 0 0 0.69385 1 14849 14849 3.5871 0.5148 1 2537600 30093 3117 19748 20151 35717 35717 -0.10123327928249637 KYQAVTATL 9 Unmodified _KYQAVTATL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7818298339844 2 497.782025 993.549496 0.59247 0.00029492 -0.64042 -0.00031879 -0.047959 -2.3873E-05 497.78169271018214 36.259 0.41352 36.259 36.113 36.527 0 68 20 5 0 0 0 0.009483 2 19176 19176;19282 81.89 31.035 1 227660000 30094 5424 19749 20152 35718;35719 35718 0.052463405860066814 KYQAVTATL 9 Unmodified _KYQAVTATL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7825317382812 2 497.782025 993.549496 -0.51946 -0.00025858 0.43331 0.00021569 -0.086143 -4.2881E-05 497.78219994595605 36.462 0.312 36.213 36.046 36.358 -0.2497 43 14 4 0 0 0 0.009483 2 19094 19094;19198 81.89 31.035 1 41701000 30095 5424 19749 20152 35720;35721 35720 0.052463405860066814 KYQAVTATL 9 Unmodified _KYQAVTATL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7816162109375 2 497.782025 993.549496 -0.079998 -3.9821E-05 0.72679 0.00036178 0.64679 0.00032196 497.78225333250055 36.134 0.26549 36.159 36.033 36.298 0.024967 29 11 3 0 0 0 0.0088174 2 19109 19109;19209 103.75 35.668 1 16382000 30096 5424 19749 20152 35722;35723 35722 0.052463405860066814 KYQAVTATL 9 Unmodified _KYQAVTATL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7825317382812 2 497.782025 993.549496 1.2657 0.00063005 -0.44053 -0.00021929 0.82518 0.00041076 497.78171695259283 40.844 0.63717 36.315 35.988 36.625 -4.5294 180 39 6 0 0 0 0.009483 4 24528 24270;24399;24528;24672 81.89 24.419 1 887450000 30097 5424 19749 20152 35724;35725;35726;35727 35726 0.052463405860066814 KYQAVTATL 9 Unmodified _KYQAVTATL_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;nc|ENSG00000293056|Q6NVV1|RPL13AP3 ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.5571899414062 1 994.556773 993.549496 1.0531 0.0010474 -0.053781 -5.3488E-05 0.99932 0.00099388 994.5564992636804 40.841 0.44739 36.312 36.064 36.511 -4.5294 70 27 3 0 0 0 0.0074135 4 24421 24295;24353;24421;24551 110.67 58.406 1 30389000 30098 5424 19749 20152 35728;35729;35730;35731 35730 0.052463405860066814 KYQDAPAAQF 10 Unmodified _KYQDAPAAQF_ 0 0 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7808837890625 2 569.780013 1137.54547 -0.16446 -9.3708E-05 1.4358 0.00081808 1.2713 0.00072437 569.7805295982006 33.373 0.17251 33.373 33.243 33.415 0 18 8 3 0 0 0 0.036856 1 17488 17488 74.2 32.105 1 3224800 30099 1289 19750 20153 35732 35732 -0.01779748907733847 KYQDGVYVL 9 Unmodified _KYQDGVYVL_ 0 0 0 ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1 ENST00000607742.5_1_6:158538757-158579378:-|nuORF ENST00000607742.5_1_6:158538757-158579378:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7874755859375 2 542.787307 1083.56006 0.73431 0.00039858 0.47064 0.00025546 1.205 0.00065403 542.7876616512835 47.741 0.53205 47.741 47.427 47.959 0 47 24 3 0 0 0 0.010611 1 26201 26201 78.728 17.371 1 6560700 30100 3630 19751 20154 35733 35733 0.02162323240418118 KYQDGVYVL 9 Unmodified _KYQDGVYVL_ 0 0 0 ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1 ENST00000607742.5_1_6:158538757-158579378:-|nuORF ENST00000607742.5_1_6:158538757-158579378:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7870483398438 2 542.787307 1083.56006 0.50993 0.00027678 -0.48783 -0.00026479 0.022097 1.1994E-05 542.7871916698423 53.328 0.34374 47.524 47.35 47.693 -5.8042 30 21 2 0 0 0 0.0071894 1 33675 33675 111.29 40.153 1 19935000 30101 3630 19751 20154 35734 35734 0.02162323240418118 KYQDILETI 9 Unmodified _KYQDILETI_ 0 0 0 nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF;nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7 nc|ENSG00000179299|Q8NE18-3|NSUN7 nc|ENSG00000179299|Q8NE18-3|NSUN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.803955078125 2 561.805697 1121.59684 0.2892 0.00016248 -1.6423 -0.00092268 -1.3531 -0.0007602 561.8047057600411 62.467 0.25422 62.467 62.378 62.633 0 33 17 3 0 0 0 0.039985 1 34815 34815 49.933 25.912 1 5594200 30102 8826 19752 20155 35735 35735 0.04090575066334168 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.3036499023438 2 568.303321 1134.59209 0.34936 0.00019854 -2.6885 -0.0015279 -2.3391 -0.0013293 568.3032155771866 61.533 0.43156 61.533 61.297 61.728 0 91 19 6 0 0 0 0.0086904 2 34283 34283;34387 107.19 44.614 1 87159000 30103 5714 19753 20156 35736;35737 35736 0.030176909235706262 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3033447265625 2 568.303321 1134.59209 0.65323 0.00037123 -0.10814 -6.1455E-05 0.54509 0.00030978 568.303194427873 61.987 0.31286 61.499 61.325 61.638 -0.48764 27 14 2 0 0 0 0.0017364 1 33766 33766 134.3 52.405 1 26736000 30104 5714 19753 20156 35738 35738 0.030176909235706262 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MSMS AL20221201_MKP_PDAC_01 4 568.302978515625 2 568.303321 1134.59209 NaN NaN NaN NaN NaN NaN NaN 67.539 1 61.363 60.863 61.863 -6.1757 0 0 0 0.010117 1 44004 44004 92.491 26.035 1 30105 5714 19753 20156 35739 35739 0.030176909235706262 KYQDILNEI 9 Unmodified _KYQDILNEI_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.303321 1134.59209 0.42186 0.00023974 0.138 7.8426E-05 0.55986 0.00031817 568.3034714523333 61.563 0.23565 61.531 61.415 61.65 -0.032787 0.0097984 0.00040237 NaN 134.3 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4479900 30106 5714 19753 20156 0.030176909235706262 KYQDVYVEL 9 Unmodified _KYQDVYVEL_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7982788085938 2 578.797872 1155.58119 0.36238 0.00020975 -0.18682 -0.00010813 0.17557 0.00010162 578.7976353501002 52.76 0.64655 52.76 52.311 52.958 0 74 29 6 0 0 0 0.0082475 2 29115 29115;29225 92.653 39.942 1 187080000 30107 1756 19754 20157 35740;35741 35740 0.009622885492944988 KYQDVYVEL 9 Unmodified _KYQDVYVEL_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7982177734375 2 578.797872 1155.58119 0.42801 0.00024773 0.10353 5.9924E-05 0.53154 0.00030765 578.7976871256062 53.22 0.29573 52.769 52.647 52.943 -0.45173 33 14 3 0 0 0 0.014417 1 28772 28772 69.105 37.837 1 8869600 30108 1756 19754 20157 35742 35742 0.009622885492944988 KYQDVYVEL 9 Unmodified _KYQDVYVEL_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3018188476562 2 578.797872 1155.58119 0.79339 0.00045921 1.3612 0.00078786 2.1546 0.0012471 579.3006922164252 52.866 0.25737 52.803 52.683 52.94 -0.063423 20 12 2 0 0 0 0.07087 1 28654 28654 39.95 18.413 1 2714800 30109 1756 19754 20157 35743 35743 0.009622885492944988 KYQDVYVEL 9 Unmodified _KYQDVYVEL_ 0 0 0 nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-5|TRIOBP;nc|ENSG00000100106|Q9H2D6-7|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP nc|ENSG00000100106|Q9H2D6-3|TRIOBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7994384765625 2 578.797872 1155.58119 1.459 0.00084449 1.9311 0.0011177 3.3901 0.0019622 578.798647815085 58.922 0.89103 52.847 52.28 53.171 -6.0745 160 49 4 0 0 0 0.023481 1 37756 37756 60.074 14.374 1 339970000 30110 1756 19754 20157 35744 35744 0.009622885492944988 KYQEALSYL 9 Unmodified _KYQEALSYL_ 0 0 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7924194335938 2 557.792589 1113.57063 0.65741 0.0003667 -0.042569 -2.3745E-05 0.61484 0.00034295 557.7925319876853 52.624 0.3127 52.19 52.044 52.356 -0.43367 38 15 3 0 0 0 0.13639 1 28418 28418 38.176 0 1 5836200 30111 696 19755 20158 35745 35745 0.018383058948302278 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5243225097656 3 419.524261 1255.55095 0.48018 0.00020145 0.28834 0.00012097 0.76853 0.00032241 419.5243125493072 36.667 0.29062 36.667 36.527 36.818 0 45 13 5 0 0 0 0.03568 1 19439 19439 40.239 32.084 1 25249000 30112 1131 19756 20159 35746 35746 -0.06660070115890449 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.782958984375 2 628.782753 1255.55095 0.65749 0.00041342 0.044971 2.8277E-05 0.70246 0.0004417 628.7827536290649 36.663 0.2693 36.663 36.527 36.796 0 40 12 4 0 0 0 2.2403E-21 1 19440 19440 201.57 159.26 1 22237000 30113 1131 19756 20159 35747 35747 -0.06660070115890449 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.783447265625 2 628.782753 1255.55095 0.95819 0.00060249 -0.059229 -3.7242E-05 0.89896 0.00056525 628.7827598551955 41.05 0.40066 36.442 36.211 36.612 -4.6079 59 24 3 0 0 0 1.61E-62 2 24636 24499;24636 249.11 189.04 1 32048000 30114 1131 19756 20159 35748;35749 35749 -0.06660070115890449 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5245666503906 3 419.524261 1255.55095 1.4571 0.0006113 -0.0053166 -2.2305E-06 1.4518 0.00060907 419.5241935761098 40.997 0.44387 36.389 36.18 36.624 -4.6079 69 27 3 0 0 0 0.012148 2 24658 24518;24658 66.457 50.182 1 48954000 30115 1131 19756 20159 35750;35751 35751 -0.06660070115890449 KYQEEFEHF 9 Unmodified _KYQEEFEHF_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 419.524261 1255.55095 -0.30034 -0.000126 1.396 0.00058565 1.0956 0.00045965 419.5249947984591 36.961 0.062675 36.712 36.667 36.729 -0.2497 0.12244 0.0014568 NaN 66.457 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 497900 30116 1131 19756 20159 -0.06660070115890449 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.32470703125 2 584.324057 1166.63356 0.20808 0.00012159 -0.066489 -3.8851E-05 0.14159 8.2735E-05 584.3240375253423 69.304 0.3177 69.304 69.127 69.444 0 34 13 3 0 0 0 0.094149 1 38570 38570 34.402 15.145 1 4313900 30117 5184 19757 20160 35752 35752 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3243408203125 2 584.324057 1166.63356 -0.21618 -0.00012632 1.0175 0.00059456 0.80133 0.00046824 584.324527545595 69.694 0.49854 69.215 68.949 69.448 -0.47903 83 21 5 0 0 0 0.0085164 3 38005 38005;38101;38203 99.799 42.077 1 72863000 30118 5184 19757 20160 35753;35754;35755 35753 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3245239257812 2 584.324057 1166.63356 0.89335 0.00052201 -0.056311 -3.2904E-05 0.83704 0.0004891 584.3238721797403 69.129 0.51913 69.16 68.776 69.295 0.030914 62 24 4 0 0 0 0.009483 1 37969 37969 81.89 25.713 1 23716000 30119 5184 19757 20160 35756 35756 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3237915039062 2 584.324057 1166.63356 0.73001 0.00042656 0.82968 0.0004848 1.5597 0.00091137 584.3240029010049 84.292 0.52235 78.116 77.72 78.242 -6.1757 51 28 2 0 0 0 0.014417 1 55473 55473 69.105 19.172 1 12986000 30120 5184 19757 20160 35757 35757 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3244018554688 2 584.324057 1166.63356 0.075476 4.4102E-05 0.63287 0.0003698 0.70835 0.0004139 584.3243363477992 85.252 0.69519 79.077 78.749 79.445 -6.1757 63 42 2 0 0 0 0.0082661 4 56363 56052;56098;56236;56363 92.491 29.919 1 23139000 30121 5184 19757 20160 35758;35759;35760;35761 35761 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3245849609375 2 584.324057 1166.63356 1.1412 0.00066682 -0.23407 -0.00013677 0.90712 0.00053005 584.3240623883581 86.728 1.2267 80.553 79.977 81.203 -6.1757 134 66 3 0 0 0 0.009483 5 57157 56914;57032;57157;57281;57399 81.89 38.032 1 101880000 30122 5184 19757 20160 35762;35763;35764;35765;35766 35764 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MSMS AL20221201_MKP_PDAC_01 4 584.3246459960938 2 584.324057 1166.63356 NaN NaN NaN NaN NaN NaN NaN 84.686 1 78.51 78.01 79.01 -6.1757 0 0 0 0.044471 1 55730 55730 60.074 18.234 1 30123 5184 19757 20160 35767 35767 0.05690871682895704 KYQELQVLF 9 Unmodified _KYQELQVLF_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B;ENST00000543590.1_1_12:123355407-123355842:-|nuORF ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MSMS AL20221201_MKP_PDAC_01 4 584.323486328125 2 584.324057 1166.63356 NaN NaN NaN NaN NaN NaN NaN 84.944 1 78.769 78.269 79.269 -6.1757 0 0 0 0.044471 1 55919 55919 60.074 21.898 1 30124 5184 19757 20160 35768 35768 0.05690871682895704 KYQEQPHLL 9 Unmodified _KYQEQPHLL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;TBCD-FOXK2|2|fusion;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8770751953125 3 385.876746 1154.60841 -0.80178 -0.00030939 1.2152 0.00046892 0.41341 0.00015953 385.8772127091324 32.052 0.30346 32.052 31.9 32.204 0 36 14 3 0 0 0 0.052168 1 16711 16711 32.786 24.84 1 3683200 30125 5350;30184 19758 20161 35769 35769 0.03728816880334307 KYQEQPHLL 9 Unmodified _KYQEQPHLL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;TBCD-FOXK2|2|fusion;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3118896484375 2 578.31148 1154.60841 -0.55324 -0.00031995 2.8858 0.0016689 2.3326 0.001349 578.3119931857614 32.052 0.2638 32.052 31.92 32.184 0 28 12 3 0 0 0 0.07087 1 16735 16735 39.95 9.7249 1 1904200 30126 5350;30184 19758 20161 35770 35770 0.03728816880334307 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7849731445312 2 554.785296 1107.55604 -0.17452 -9.682E-05 -0.95344 -0.00052895 -1.128 -0.00062577 554.7846702917439 28.732 0.57917 28.732 28.483 29.063 0 85 28 5 0 0 0 0.0048194 2 14799 14799;14901 131.27 75.091 1 398100000 30127 49 19759 20162 35771;35772 35771 0.006562337467130419 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7861938476562 2 554.785296 1107.55604 0.80245 0.00044519 -0.16436 -9.1184E-05 0.63809 0.000354 554.7851152435312 28.714 0.21846 28.652 28.502 28.721 -0.062159 17 8 3 0 0 0 0.0082981 1 14807 14807 107.19 55.557 1 4739100 30128 49 19759 20162 35773 35773 0.006562337467130419 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.786376953125 2 554.785296 1107.55604 0.30023 0.00016656 0.8593 0.00047673 1.1595 0.00064329 554.7858761312583 28.56 0.28553 28.59 28.444 28.73 0.029564 23 10 3 0 0 0 0.0082981 1 14846 14846 107.19 51.01 1 7658800 30129 49 19759 20162 35774 35774 0.006562337467130419 KYQEVTNNL 9 Unmodified _KYQEVTNNL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.28759765625 2 554.785296 1107.55604 0.73747 0.00040914 -0.32671 -0.00018126 0.41076 0.00022788 554.7849493831518 32.685 0.62804 28.828 28.516 29.144 -3.8562 124 34 5 0 0 0 0.0073703 3 18521 18521;18643;18769 134.3 75.617 1 1577299999.9999998 30130 49 19759 20162 35775;35776;35777 35775 0.006562337467130419 KYQEVTNNLEF 11 Unmodified _KYQEVTNNLEF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.8411865234375 2 692.840799 1383.66705 -0.21579 -0.00014951 0.086443 5.9891E-05 -0.12935 -8.9616E-05 692.8408208049906 48.992 0.42893 48.992 48.786 49.215 0 77 20 5 0 0 0 8.959E-09 2 26851 26851;26965 110.79 85.802 1 230480000 30131 49 19760 20163 35778;35779 35778 -0.009441713358683046 KYQEVTNNLEF 11 Unmodified _KYQEVTNNLEF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.8408813476562 2 692.840799 1383.66705 0.51535 0.00035706 0.33726 0.00023366 0.85261 0.00059072 692.840956509563 49.312 0.34349 48.94 48.734 49.078 -0.37172 63 16 5 0 0 0 7.4113E-15 2 26447 26447;26548 132.38 102.54 1 77159000 30132 49 19760 20163 35780;35781 35780 -0.009441713358683046 KYQEVTNNLEF 11 Unmodified _KYQEVTNNLEF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.83984375 2 692.840799 1383.66705 0.35013 0.00024258 -1.2644 -0.00087603 -0.91427 -0.00063345 692.8398639640578 48.949 0.29851 48.906 48.772 49.07 -0.04369 45 14 4 0 0 0 2.5626E-06 1 26404 26404 100.71 75.718 1 16468000 30133 49 19760 20163 35782 35782 -0.009441713358683046 KYQEVTNNLEF 11 Unmodified _KYQEVTNNLEF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.841552734375 2 692.840799 1383.66705 0.54705 0.00037902 0.31974 0.00022153 0.86679 0.00060055 692.8409553577262 54.982 0.73402 49.098 48.71 49.445 -5.8838 161 45 5 0 0 0 6.2664E-11 5 35137 34707;34728;34859;34989;35137 121.35 75.861 1 682740000 30134 49 19760 20163 35783;35784;35785;35786;35787 35787 -0.009441713358683046 KYQEVTNNLEF 11 Unmodified _KYQEVTNNLEF_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 692.8413696289062 2 692.840799 1383.66705 NaN NaN NaN NaN NaN NaN NaN 55.532 1 49.611 49.111 50.111 -5.9211 0 0 0 0.26205 1 35361 35361 35.612 22.57 1 30135 49 19760 20163 35788 35788 -0.009441713358683046 KYQEYTNEL 9 Unmodified _KYQEYTNEL_ 0 0 0 ENSG00000183735|ENST00000331710|TBK1;ENST00000545392.1_1_12:64890804-64891535:+|nuORF ENSG00000183735|ENST00000331710|TBK1 ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2828979492188 2 594.282586 1186.55062 -0.53843 -0.00031998 1.9817 0.0011777 1.4433 0.00085773 594.2837579256042 33.247 0.25766 33.247 33.088 33.345 0 47 12 5 0 0 0 0.0086722 1 17371 17371 88.954 45.096 1 32010000 30136 9185 19761 20164 35789 35789 -0.0351948983575312 KYQGVTQGF 9 Unmodified _KYQGVTQGF_ 0 0 0 nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000479727.1_1_1:224585697-224586694:-|nuORF;ENST00000486652.5_1_1:224577539-224589708:-|nuORF nc|ENSG00000162923|Q9H7D7-2|WDR26 nc|ENSG00000162923|Q9H7D7-2|WDR26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2634887695312 2 514.263999 1026.51345 0.55459 0.00028521 -0.72829 -0.00037453 -0.1737 -8.9329E-05 514.2636230250176 36.588 0.38461 32.304 32.173 32.557 -4.2835 32 23 2 0 0 0 0.013041 2 21445 21328;21445 71.922 25.901 1 10801000 30137 6929 19762 20165 35790;35791 35791 0.0012488340912568674 KYQHLKAEF 9 Unmodified _KYQHLKAEF_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5453796386719 3 388.545108 1162.61349 -0.37989 -0.00014761 0.99118 0.00038512 0.61129 0.00023751 388.54547353648536 22.4 0.34743 22.4 22.264 22.611 0 40 16 4 0 0 0 0.098164 1 11379 11379 33.445 20.572 1 6571200 30138 2026 19763 20166 35792 35792 0.03869120742933774 KYQHLKAEF 9 Unmodified _KYQHLKAEF_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5456848144531 3 388.545108 1162.61349 0.36069 0.00014014 0.29355 0.00011406 0.65423 0.0002542 388.54523805046307 25.172 0.49934 22.289 22.068 22.568 -2.8831 116 40 4 0 0 0 0.069655 2 13892 13777;13892 40.239 16.879 1 150710000 30139 2026 19763 20166 35793;35794 35794 0.03869120742933774 KYQHLKAEF 9 Unmodified _KYQHLKAEF_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3150024414062 2 582.314023 1162.61349 -0.015789 -9.1942E-06 0.80054 0.00046617 0.78475 0.00045697 582.3144234785238 25.166 0.2995 22.283 22.183 22.482 -2.8831 53 26 3 0 0 0 0.016848 1 13823 13823 55.235 33.698 1 14085000 30140 2026 19763 20166 35795 35795 0.03869120742933774 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.3050537109375 2 592.303321 1182.59209 -0.052843 -3.1299E-05 -0.11973 -7.0914E-05 -0.17257 -0.00010221 592.3031701140854 51.822 0.37003 51.822 51.583 51.953 0 69 16 6 0 0 0 0.0090948 2 28560 28560;28682 85.272 43.316 1 240340000 30141 7063 19764 20167 35796;35797 35796 0.008096909235518979 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3045043945312 2 592.303321 1182.59209 0.58798 0.00034826 0.074584 4.4176E-05 0.66256 0.00039244 592.303291567641 52.382 0.31552 51.949 51.749 52.064 -0.43367 54 15 5 0 0 0 0.015445 2 28243 28243;28357 68.081 35.295 1 54475000 30142 7063 19764 20167 35798;35799 35798 0.008096909235518979 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3040161132812 2 592.303321 1182.59209 0.24702 0.00014631 0.3127 0.00018521 0.55972 0.00033152 592.3031467039197 52.036 0.25244 51.977 51.854 52.107 -0.058918 34 11 4 0 0 0 0.0090948 1 28157 28157 85.272 31.868 1 9672100 30143 7063 19764 20167 35800 35800 0.008096909235518979 KYQIINEEF 9 Unmodified _KYQIINEEF_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3035278320312 2 592.303321 1182.59209 0.95934 0.00056822 0.095002 5.627E-05 1.0543 0.00062449 592.3033626891192 58.408 1.2533 52.334 51.545 52.798 -6.0745 191 69 5 0 0 0 0.0090948 3 37353 37353;37479;37606 85.272 47.298 1 542030000 30144 7063 19764 20167 35801;35802;35803 35801 0.008096909235518979 KYQKGFSL 8 Unmodified _KYQKGFSL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7709045410156 2 485.77146 969.528367 NaN NaN NaN NaN NaN NaN NaN 30.43 1 30.46 29.96 30.96 0.030106 0 0 0 0.9489 1 15910 15910 10.824 2.9138 1 30145 950 19765 20168 35804 35804 0.042383752771456784 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.208984375 3 386.209836 1155.60768 -0.28015 -0.0001082 -0.23963 -9.2547E-05 -0.51978 -0.00020074 386.209646934131 51.323 0.37263 51.269 51.087 51.46 -0.053875 61 18 4 0 0 0 0.1773 2 27710 27710;27813 18.373 8.1468 1 67623000 30146 950 19766 20169 35805;35806 35805 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.8114013671875 2 578.811116 1155.60768 0.11273 6.5252E-05 -0.1077 -6.2338E-05 0.0050349 2.9142E-06 578.8109421886181 51.347 0.53116 51.293 51.047 51.578 -0.053875 63 26 3 0 0 0 0.0024112 2 27746 27746;27864 129.77 81.426 1 157010000 30147 950 19766 20169 35807;35808 35807 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8106689453125 2 578.811116 1155.60768 1.1571 0.00066975 0.045292 2.6215E-05 1.2024 0.00069596 578.8111648020711 55.398 0.59949 49.477 49.241 49.84 -5.9211 128 36 4 0 0 0 0.0024112 3 35125 35125;35259;35386 129.77 81.426 1 342240000 30148 950 19766 20169 35809;35810;35811 35809 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5451965332031 3 386.209836 1155.60768 1.5311 0.00059132 0.51575 0.00019919 2.0468 0.00079051 386.210057409122 55.457 0.63756 49.536 49.223 49.861 -5.9211 142 38 5 0 0 0 0.07916 3 35152 35152;35294;35424 28.495 15.452 1 309520000 30149 950 19766 20169 35812;35813;35814 35812 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2100219726562 3 386.209836 1155.60768 1.2813 0.00049486 -1.0534 -0.00040682 0.22797 8.8043E-05 386.20932457823875 75.058 1.2358 68.882 68.344 69.58 -6.1757 97 66 2 0 0 0 0.047196 6 48734 48734;48853;48982;49107;49231;49353 34.932 19.684 1 22940000 30150 950 19766 20169 35815;35816;35817;35818;35819;35820 35815 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2111511230469 3 386.209836 1155.60768 1.0967 0.00042356 -0.63952 -0.00024699 0.45719 0.00017657 386.2093125382394 76.367 0.71947 70.191 69.58 70.299 -6.1757 56 39 2 0 0 0 0.047196 2 49844 49600;49844 34.932 15.57 1 22917000 30151 950 19766 20169 35821;35822 35822 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8106079101562 2 578.811116 1155.60768 0.41193 0.00023843 0.41872 0.00024236 0.83066 0.00048079 578.8119056956691 76.521 1.5112 70.345 69.968 71.479 -6.1757 170 84 3 0 0 0 0.0024112 6 50073 50073;50195;50318;50441;50564;50682 129.77 83.751 1 24969000 30152 950 19766 20169 35823;35824;35825;35826;35827;35828 35823 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5443725585938 3 386.209836 1155.60768 0.75763 0.00029261 -0.37846 -0.00014617 0.37917 0.00014644 386.20951047664846 77.215 0.8801 71.039 70.581 71.461 -6.1757 83 49 2 0 0 0 0.12424 4 50723 50345;50468;50586;50723 28.495 13.246 1 20163000 30153 950 19766 20169 35829;35830;35831;35832 35832 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8115234375 2 578.811116 1155.60768 0.88091 0.00050988 2.8957 0.0016761 3.7766 0.0021859 578.8134942363799 77.939 0.40372 71.763 71.461 71.865 -6.1757 38 22 2 0 0 0 0.0024112 2 50815 50815;50941 129.77 81.426 1 17039000 30154 950 19766 20169 35833;35834 35833 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2098693847656 3 386.209836 1155.60768 1.224 0.0004727 -0.38227 -0.00014764 0.84168 0.00032507 386.2095056723612 77.824 0.58138 71.648 71.392 71.973 -6.1757 63 32 3 0 0 0 0.07916 3 50977 50852;50977;51107 34.932 28.74 1 18431000 30155 950 19766 20169 35835;35836;35837 35836 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 578.812255859375 2 578.811116 1155.60768 NaN NaN NaN NaN NaN NaN NaN 74.458 1 68.283 67.783 68.783 -6.1757 0 0 0 0.027645 1 48680 48680 69.105 12.928 1 30156 950 19766 20169 35838 35838 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 386.2089538574219 3 386.209836 1155.60768 NaN NaN NaN NaN NaN NaN NaN 76.602 1 70.426 69.926 70.926 -6.1757 0 0 0 0.14 1 50107 50107 28.495 13.246 1 30157 950 19766 20169 35839 35839 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 386.2098999023438 3 386.209836 1155.60768 NaN NaN NaN NaN NaN NaN NaN 76.789 1 70.613 70.113 71.113 -6.1757 0 0 0 0.08978 1 50225 50225 34.932 20.527 1 30158 950 19766 20169 35840 35840 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 578.8157958984375 2 578.811116 1155.60768 NaN NaN NaN NaN NaN NaN NaN 78.037 1 71.862 71.362 72.362 -6.1757 0 0 0 0.010041 1 51064 51064 92.653 39.078 1 30159 950 19766 20169 35841 35841 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 578.8098754882812 2 578.811116 1155.60768 NaN NaN NaN NaN NaN NaN NaN 78.204 1 72.028 71.528 72.528 -6.1757 0 0 0 0.024473 1 51179 51179 72.968 33.018 1 30160 950 19766 20169 35842 35842 0.03610022231282528 KYQKGFSLW 9 Unmodified _KYQKGFSLW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MSMS AL20221201_MKP_PDAC_01 4 578.8120727539062 2 578.811116 1155.60768 NaN NaN NaN NaN NaN NaN NaN 78.398 1 72.222 71.722 72.722 -6.1757 0 0 0 0.032808 1 51315 51315 65.235 19.214 1 30161 950 19766 20169 35843 35843 0.03610022231282528 KYQKHQSLE 9 Unmodified _KYQKHQSLE_ 0 0 0 nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1 nc|ENSG00000163554|P02549-2|SPTA1 nc|ENSG00000163554|P02549-2|SPTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8082885742188 2 580.806562 1159.59857 1.4434 0.00083835 2.0725 0.0012037 3.5159 0.0020421 580.8078362819865 47.112 0.32559 47.079 46.938 47.263 -0.033417 30 16 2 0 0 0 0.171 1 25363 25363 34.402 9.4108 1 25198000 30162 7017 19767 20170 35844 35844 0.02515628874948561 KYQLLTSVL 9 Unmodified _KYQLLTSVL_ 0 0 0 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 ENSG00000179941|ENST00000650064|BBS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8214111328125 2 532.82115 1063.62775 0.48203 0.00025684 0.69024 0.00036777 1.1723 0.00062461 532.8210667132774 68.226 0.26978 68.251 68.127 68.397 0.025146 22 13 2 0 0 0 0.053952 1 37490 37490 56.177 39.064 1 5216800 30163 8871 19768 20171 35845 35845 0.09847773171213703 KYQNVKHNL 9 Unmodified _KYQNVKHNL_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8809509277344 3 381.88049 1142.61964 0.60791 0.00023215 0.86969 0.00033212 1.4776 0.00056427 381.88078314637323 14.999 0.16297 12.472 12.389 12.552 -2.5273 61 27 3 0 0 0 0.062454 1 7642 7642 41.956 28.341 1 7006200 30164 9902 19769 20172 35846 35846 0.054036389744851476 KYQPRFHIV 9 Unmodified _KYQPRFHIV_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5606994628906 3 396.560981 1186.66111 -0.20541 -8.1459E-05 0.062931 2.4956E-05 -0.14248 -5.6503E-05 396.5609512609011 32.841 0.3731 32.871 32.721 33.094 0.029743 58 16 5 0 0 0 0.30562 1 17214 17214 21.537 12.561 1 55735000 30165 4671 19770 20173 35847 35847 0.07524819733771437 KYQPRFHIV 9 Unmodified _KYQPRFHIV_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8949890136719 3 396.560981 1186.66111 0.818 0.00032439 0.17053 6.7626E-05 0.98853 0.00039201 396.5610087677975 36.601 0.47416 32.318 32.111 32.585 -4.2835 75 29 3 0 0 0 0.16226 2 21314 21314;21433 31.268 11.433 1 55046000 30166 4671 19770 20173 35848;35849 35848 0.07524819733771437 KYQPRFHIV 9 Unmodified _KYQPRFHIV_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MSMS AL20221201_MKP_PDAC_01 4 396.5614318847656 3 396.560981 1186.66111 NaN NaN NaN NaN NaN NaN NaN 75.986 1 69.81 69.31 70.31 -6.1757 0 0 0 0.6306 1 49708 49708 7.609 1.8255 1 30167 4671 19770 20173 35850 35850 0.07524819733771437 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5532531738281 3 374.553715 1120.63931 -0.10108 -3.786E-05 0.43814 0.00016411 0.33706 0.00012625 374.553722580327 44.596 0.29095 44.574 44.366 44.657 -0.022064 39 15 3 0 0 0 0.026094 2 23875 23875;23976 43.772 28.034 1 36638000 30168 5153 19771 20174 35851;35852 35851 0.08382014985227215 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3274536132812 2 561.326934 1120.63931 0.3759 0.000211 1.1684 0.00065586 1.5443 0.00086686 561.3268008887408 44.59 0.41758 44.568 44.281 44.698 -0.022064 55 21 3 0 0 0 0.0095811 2 23890 23890;24002 81.613 53.126 1 47632000 30169 5153 19771 20174 35853;35854 35853 0.08382014985227215 KYQPRIAVF 9 Unmodified _KYQPRIAVF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3277587890625 2 561.326934 1120.63931 0.87462 0.00049095 0.12024 6.7494E-05 0.99486 0.00055844 561.3271729986284 49.128 0.49905 43.731 43.49 43.989 -5.3961 80 32 3 0 0 0 0.0082281 2 30641 30641;30779 96.285 60.241 1 232700000 30170 5153 19771 20174 35855;35856 35855 0.08382014985227215 KYQQLFEDI 9 Unmodified _KYQQLFEDI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.3023071289062 2 592.303321 1182.59209 0.43948 0.0002603 0.48031 0.00028449 0.91979 0.00054479 592.3035407944263 60.058 0.27604 60.058 59.923 60.199 0 29 12 4 0 0 0 0.018301 1 33480 33480 65.235 23.395 1 3868200 30171 2229 19772 20175 35857 35857 0.008096909235746352 KYQQLFEDI 9 Unmodified _KYQQLFEDI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2997436523438 2 592.303321 1182.59209 -0.017031 -1.0087E-05 -3.5019 -0.0020742 -3.519 -0.0020843 592.3015526620786 60.506 0.1811 60.017 59.929 60.11 -0.48932 10 8 2 0 0 0 0.06294 1 32982 32982 41.84 20.303 1 1806600 30172 2229 19772 20175 35858 35858 0.008096909235746352 KYQQYKDI 8 Unmodified _KYQQYKDI_ 0 0 0 nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1;nc|ENSG00000134278|Q08AE8-4|SPIRE1;nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2861938476562 2 543.284931 1084.55531 0.17051 9.2637E-05 1.5535 0.00084401 1.724 0.00093665 543.2857218261959 28.315 0.18249 28.345 28.262 28.444 0.029564 14 7 2 0 0 0 0.62219 1 14761 14761 24.021 1.2843 1 2347200 30173 4582 19773 20176 35859 35859 0.0164143909764789 KYQRIAEVL 9 Unmodified _KYQRIAEVL_ 0 0 0 ENSG00000197183|ENST00000621426|NOL4L;ENST00000485364.1_1_20:31136574-31172692:-|nuORF ENSG00000197183|ENST00000621426|NOL4L ENSG00000197183|ENST00000621426|NOL4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3307495117188 2 560.329673 1118.64479 -0.12671 -7.1002E-05 0.76475 0.00042851 0.63804 0.00035751 560.3300297255582 36.905 0.21926 36.655 36.554 36.773 -0.2497 21 9 3 0 0 0 0.017075 1 19373 19373 66.457 29.95 1 5540900 30174 9925 19774 20177 35860 35860 0.09021693777026485 KYQRIAEVL 9 Unmodified _KYQRIAEVL_ 0 0 0 ENSG00000197183|ENST00000621426|NOL4L;ENST00000485364.1_1_20:31136574-31172692:-|nuORF ENSG00000197183|ENST00000621426|NOL4L ENSG00000197183|ENST00000621426|NOL4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3302001953125 2 560.329673 1118.64479 1.4198 0.00079557 0.3431 0.00019225 1.7629 0.00098782 560.3292344491863 40.998 0.39675 36.39 36.15 36.547 -4.6079 53 24 3 0 0 0 0.012668 1 24574 24574 72.968 27.268 1 16825000 30175 9925 19774 20177 35861 35861 0.09021693777026485 KYQRIAEVL 9 Unmodified _KYQRIAEVL_ 0 0 0 ENSG00000197183|ENST00000621426|NOL4L;ENST00000485364.1_1_20:31136574-31172692:-|nuORF ENSG00000197183|ENST00000621426|NOL4L ENSG00000197183|ENST00000621426|NOL4L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.329673 1118.64479 0.79655 0.00044633 0.10887 6.1002E-05 0.90542 0.00050734 560.3296642246979 36.72 0.20916 36.72 36.628 36.837 0 0.13173 -0.00033918 NaN 72.968 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1730500 30176 9925 19774 20177 0.09021693777026485 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8696899414062 2 609.869497 1217.72444 -0.042585 -2.5971E-05 -0.37588 -0.00022924 -0.41846 -0.00025521 609.8694809964416 31.378 0.20061 31.408 31.321 31.522 0.030104 18 8 3 0 0 0 0.060956 1 16438 16438 31.268 8.5321 1 5384000 30177 10167 19775 20178 35862 35862 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9154968261719 3 406.915423 1217.72444 -0.43728 -0.00017794 0.03983 1.6207E-05 -0.39745 -0.00016173 406.9154112601308 31.391 0.52811 31.421 31.247 31.775 0.030104 74 23 5 0 0 0 0.19349 1 16497 16497 23.801 8.0624 1 230900000 30178 10167 19775 20178 35863 35863 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9151306152344 3 406.915423 1217.72444 NaN NaN NaN NaN NaN NaN NaN 31.777 1 31.808 31.308 32.308 0.030106 0 0 0 0.83336 1 16664 16664 3.5871 1.0886 1 30179 10167 19775 20178 35864 35864 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2504272460938 3 406.915423 1217.72444 1.482 0.00060304 -0.056236 -2.2883E-05 1.4257 0.00058016 406.9154294608948 35.953 0.44931 31.761 31.527 31.977 -4.1928 75 28 4 0 0 0 0.030186 2 20837 20837;20964 55.249 24.545 1 59004000 30180 10167 19775 20178 35865;35866 35865 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.9160461425781 3 406.915423 1217.72444 1.5138 0.00061597 0.09127 3.7139E-05 1.605 0.00065311 406.91540774352654 79.372 0.98328 73.196 72.762 73.746 -6.1757 172 56 4 0 0 0 0.08907 4 51922 51922;52042;52181;52313 35.612 10.928 1 112550000 30181 10167 19775 20178 35867;35868;35869;35870 35867 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8719482421875 2 609.869497 1217.72444 1.3442 0.0008198 0.3357 0.00020474 1.6799 0.0010245 609.8697990174312 79.396 0.42635 73.22 73.056 73.482 -6.1757 35 24 2 0 0 0 0.030212 1 52047 52047 36.506 0 1 13137000 30182 10167 19775 20178 35871 35871 0.12428760451052767 KYQRILERL 9 Unmodified _KYQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 609.869497 1217.72444 1.2937 0.00078899 -0.18597 -0.00011342 1.1077 0.00067557 609.8696032145713 35.926 0.18962 31.734 31.664 31.853 -4.1928 0.16265 0.00012734 NaN 31.268 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3770900 30183 10167 19775 20178 0.12428760451052767 KYQTIRFL 8 Unmodified _KYQTIRFL_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8789672851562 3 356.878198 1067.61277 1.1881 0.00042402 0.80954 0.00028891 1.9977 0.00071293 356.87827326512354 46.3 0.43748 41.248 40.995 41.432 -5.0517 70 30 3 0 0 0 0.79982 1 28592 28592 6.7232 0 1 43613000 30184 6148 19776 20179 35872 35872 0.08166326093919452 KYRDFQHLL 9 Unmodified _KYRDFQHLL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028301-155028614:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.2243041992188 3 407.224257 1218.65094 0.2878 0.0001172 -0.25994 -0.00010586 0.027858 1.1344E-05 407.22426492069314 41.04 0.26204 40.737 40.601 40.863 -0.30304 29 12 3 0 0 0 0.19361 1 21694 21694 23.79 4.1638 1 8336100 30185 9 19777 20180 35873 35873 0.050362120085537754 KYRDFQHLL 9 Unmodified _KYRDFQHLL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028301-155028614:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2242431640625 3 407.224257 1218.65094 0.18081 7.3631E-05 -0.41792 -0.00017019 -0.2371 -9.6554E-05 407.2241142302917 40.765 0.28464 40.763 40.587 40.871 -0.0017929 25 13 2 0 0 0 0.2324 1 21708 21708 20.415 5.4574 1 19868000 30186 9 19777 20180 35874 35874 0.050362120085537754 KYRDFQHLL 9 Unmodified _KYRDFQHLL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028301-155028614:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2250061035156 3 407.224257 1218.65094 0.77005 0.00031358 0.40557 0.00016516 1.1756 0.00047874 407.2243844699045 82.847 0.87964 76.671 76.106 76.985 -6.1757 91 49 2 0 0 0 0.2324 4 54239 54107;54239;54373;54532 20.415 6.8959 1 23559000 30187 9 19777 20180 35875;35876;35877;35878 35876 0.050362120085537754 KYRDFQHLL 9 Unmodified _KYRDFQHLL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028301-155028614:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MSMS AL20221201_MKP_PDAC_01 4 407.224609375 3 407.224257 1218.65094 NaN NaN NaN NaN NaN NaN NaN 45.294 1 40.339 39.839 40.839 -4.9549 0 0 0 0.32622 1 27777 27777 23.79 5.0686 1 30188 9 19777 20180 35879 35879 0.050362120085537754 KYRDQYNWF 9 Unmodified _KYRDQYNWF_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.5438842773438 3 440.543767 1318.60947 0.507 0.00022336 0.077014 3.3928E-05 0.58402 0.00025729 440.5437454060981 48.096 0.21579 47.743 47.615 47.831 -0.3526 25 10 3 0 0 0 0.13231 1 25783 25783 29.841 23.21 1 4845200 30189 8070 19778 20181 35880 35880 -0.03708968750788699 KYRDQYNWF 9 Unmodified _KYRDQYNWF_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.8785400390625 3 440.543767 1318.60947 0.75704 0.00033351 0.4135 0.00018217 1.1705 0.00051568 440.5438981691443 47.81 0.30421 47.771 47.62 47.924 -0.038643 44 14 4 0 0 0 0.37578 2 25735 25735;25834 13.615 9.4982 1 10340000 30190 8070 19778 20181 35881;35882 35881 -0.03708968750788699 KYRDQYNWF 9 Unmodified _KYRDQYNWF_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.8788452148438 3 440.543767 1318.60947 0.59015 0.00025999 -0.24557 -0.00010818 0.34458 0.0001518 440.5437135765605 52.049 0.11486 46.314 46.248 46.363 -5.7345 12 7 2 0 0 0 0.053952 1 32806 32806 43.982 21.207 1 30536000 30191 8070 19778 20181 35883 35883 -0.03708968750788699 KYRDQYNWF 9 Unmodified _KYRDQYNWF_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MSMS AL20221201_MKP_PDAC_01 4 660.3131713867188 2 660.312012 1318.60947 NaN NaN NaN NaN NaN NaN NaN 52.099 1 46.364 45.864 46.864 -5.7345 0 0 0 0.033505 1 32864 32864 79.596 49.756 1 30192 8070 19778 20181 35884 35884 -0.03708968750788699 KYRDQYNWFFL 11 Unmodified _KYRDQYNWFFL_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.6971740722656 4 395.697764 1578.76195 0.5013 0.00019836 -1.4346 -0.00056765 -0.93326 -0.00036929 395.6969086919334 39.866 0.23094 35.337 35.155 35.386 -4.5294 31 14 3 0 0 0 0.73992 1 23706 23706 0.50596 0 1 11351000 30193 8070 19779 20182 35885 35885 -0.004281930740262396 KYREMYEEF 9 Oxidation (M) _KYREM(Oxidation (M))YEEF_ KYREM(1)YEEF KYREM(46)YEEF 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.7901000976562 2 655.789721 1309.56489 -0.72825 -0.00047758 0.21118 0.00013849 -0.51707 -0.00033909 655.7899778557135 28.667 0.29767 28.667 28.483 28.781 0 25 14 2 0 0 0 0.047714 1 14760 14760 45.74 27.594 1 2371800 30194 640 19780 20183 35886 35886 98 -0.07751160679140412 KYREMYEEF 9 Unmodified _KYREMYEEF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5324096679688 3 432.197268 1293.56997 0.49816 0.0002153 0.33443 0.00014454 0.83259 0.00035984 432.19750618535204 41.475 0.44014 36.868 36.655 37.095 -4.6079 59 28 3 0 0 0 0.20428 2 24865 24845;24865 18.373 2.6345 1 24898000 30195 640 19780 20184 35887;35888 35888 -0.06506856816531581 KYREMYEEF 9 Unmodified _KYREMYEEF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.7922973632812 2 647.792263 1293.56997 0.32749 0.00021215 -0.033456 -2.1673E-05 0.29404 0.00019047 648.2939158925924 41.552 0.25845 36.944 36.788 37.047 -4.6079 30 17 2 0 0 0 0.0093064 2 24897 24897;25039 83.429 27.926 1 14280000 30196 640 19780 20184 35889;35890 35889 -0.06506856816531581 KYREMYEEF 9 Unmodified _KYREMYEEF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 432.197268 1293.56997 0.31405 0.00013573 0.83901 0.00036262 1.1531 0.00049835 432.1975119485678 37.082 0.2025 37.082 36.977 37.18 0 0.10728 0.00048817 NaN 16.566 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 919180 30197 640 19780 20184 -0.06506856816531581 KYRHGNMVFF 10 Unmodified _KYRHGNMVFF_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.5541687011719 3 433.553609 1297.639 1.2129 0.00052586 0.16857 7.3082E-05 1.3815 0.00059895 433.5536240743276 90.519 0.20813 84.343 84.236 84.444 -6.1757 26 11 3 0 0 0 0.30444 1 59763 59763 27.223 16.324 1 18790000 30198 1687 19781 20185 35891 35891 0.0020827199371069582 KYRLVEEKN 9 Unmodified _KYRLVEEKN_ 0 0 0 REV__ENSG00000129518|ENST00000250454|EAPP REV__ENSG00000129518|ENST00000250454|EAPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.1719970703125 2 589.830037 1177.64552 0.13787 8.1317E-05 0.076051 4.4857E-05 0.21392 0.00012617 589.8300459735381 20.287 0.19957 20.297 20.189 20.388 0.010553 29 11 3 0 0 0 0.59812 1 10389 10389 1.4819 0 1 5783700 + 30199 19671 19782 20186 35892 35892 0.06380488426111697 KYRPLFDYF 9 Unmodified _KYRPLFDYF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.8851013183594 3 416.885241 1247.63389 0.21874 9.119E-05 -0.17821 -7.4293E-05 0.040531 1.6897E-05 416.8850946466316 67.433 0.35123 67.451 67.258 67.609 0.018028 57 17 4 0 0 0 0.06187 2 36972 36972;37073 31.268 25.866 1 31474000 30200 9795 19783 20187 35893;35894 35893 0.01998291402742325 KYRPLFDYF 9 Unmodified _KYRPLFDYF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8250122070312 2 624.824224 1247.63389 0.51153 0.00031962 -0.037022 -2.3132E-05 0.47451 0.00029648 624.8241693193222 67.427 0.33246 67.445 67.277 67.609 0.018028 40 16 3 0 0 0 0.020973 1 36987 36987 62.573 35.689 1 17541000 30201 9795 19783 20187 35895 35895 0.01998291402742325 KYRPLFDYF 9 Unmodified _KYRPLFDYF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8259887695312 2 624.824224 1247.63389 1.0667 0.00066652 0.046419 2.9004E-05 1.1131 0.00069552 624.8242889251353 95.945 0.45702 89.769 89.584 90.041 -6.1757 57 27 3 0 0 0 0.0036082 2 63489 63489;63606 123.45 79.592 1 44890000 30202 9795 19783 20187 35896;35897 35896 0.01998291402742325 KYRPLFDYF 9 Unmodified _KYRPLFDYF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8857421875 3 416.885241 1247.63389 1.5506 0.00064643 0.35371 0.00014746 1.9043 0.00079389 416.8851039655694 95.945 0.45638 89.77 89.569 90.025 -6.1757 59 27 3 0 0 0 0.23158 2 63491 63491;63616 19.362 11.333 1 41454000 30203 9795 19783 20187 35898;35899 35898 0.01998291402742325 KYRQFVDRE 9 Unmodified _KYRQFVDRE_ 0 0 0 REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.21875 3 414.219283 1239.63602 -0.056382 -2.3355E-05 0.27388 0.00011345 0.2175 9.0091E-05 414.21950967991 18.981 0.14524 18.987 18.901 19.046 0.0060482 21 7 4 0 0 0 0.094905 1 9635 9635 34.222 2.586 1 2597400 + 30204 27662 19784 20188 35900 35900 0.025787201405364613 KYRQKFNTL 9 Unmodified _KYRQKFNTL_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8960571289062 3 399.89614 1196.66659 -0.074788 -2.9907E-05 0.65568 0.0002622 0.58089 0.0002323 399.89638250806485 19.393 0.21926 19.401 19.28 19.5 0.0078487 34 12 4 0 0 0 0.40476 1 9843 9843 12.241 2.4764 1 2950400 30205 10087 19785 20189 35901 35901 0.07612498525622868 KYRQKFNTL 9 Unmodified _KYRQKFNTL_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8968505859375 3 399.89614 1196.66659 1.2463 0.00049839 0.66252 0.00026494 1.9088 0.00076333 399.8964023401318 21.726 0.42299 18.991 18.767 19.19 -2.7348 68 24 4 0 0 0 0.2324 2 11686 11583;11686 20.415 7.5419 1 26523000 30206 10087 19785 20189 35902;35903 35903 0.07612498525622868 KYRQKFNTL 9 Unmodified _KYRQKFNTL_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3406982421875 2 599.340572 1196.66659 0.53847 0.00032272 0.30794 0.00018456 0.84641 0.00050729 599.3407760485621 21.746 0.18926 19.011 18.882 19.072 -2.7348 11 9 2 0 0 0 0.40615 1 11670 11670 12.241 3.4953 1 1466600 30207 10087 19785 20189 35904 35904 0.07612498525622868 KYRQQFEEL 9 Unmodified _KYRQQFEEL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.5496826171875 3 414.215539 1239.62479 -0.32424 -0.00013431 0.32215 0.00013344 -0.0020917 -8.6642E-07 414.2156497565528 30.985 0.30051 30.985 30.811 31.111 0 52 14 5 0 0 0 0.14594 2 16066 16066;16166 28.495 8.8686 1 32369000 30208 1648 19786 20190 35905;35906 35905 0.014558980464244087 KYRQQFEEL 9 Unmodified _KYRQQFEEL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2149047851562 3 414.215539 1239.62479 1.2437 0.00051517 -0.073841 -3.0586E-05 1.1699 0.00048458 414.21532034928646 34.217 0.61959 30.231 29.875 30.494 -3.9853 93 34 4 0 0 0 0.091924 3 19863 19613;19742;19863 34.932 18.658 1 93400000 30209 1648 19786 20190 35907;35908;35909 35909 0.014558980464244087 KYRQQFEEL 9 Unmodified _KYRQQFEEL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8207397460938 2 620.81967 1239.62479 0.78779 0.00048907 0.26883 0.0001669 1.0566 0.00065597 620.8196973971217 34.224 0.3889 30.239 30.022 30.411 -3.9853 58 21 4 0 0 0 0.0091809 2 19649 19649;19777 103.35 51.724 1 38444000 30210 1648 19786 20190 35910;35911 35910 0.014558980464244087 KYRSKSKF 8 Unmodified _KYRSKSKF_ 0 0 0 REV__ENST00000484427.5_1_20:47852594-47860368:+|nuORF REV__ENST00000484427.5_1_20:47852594-47860368:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8096313476562 2 522.303458 1042.59236 0.30329 0.00015841 0.78117 0.00040801 1.0845 0.00056642 522.3027426207447 72.064 0.5269 72.103 71.768 72.295 0.039024 70 25 4 0 0 0 0.78849 1 39570 39570 9.3474 0 1 7883300 + 30211 19431 19787 20191 35912 35912 0.07277155434076121 KYRVIYKRVK 10 Unmodified _KYRVIYKRVK_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.4312133789062 2 676.929889 1351.84522 1.6115 0.0010909 -1.7156 -0.0011614 -0.10409 -7.0463E-05 676.9284253952122 105.64 0.36507 99.464 99.375 99.74 -6.1757 74 37 3 0 0 0 0.72247 1 70763 70763 0.40072 0.093686 1 9821200 + 30212 18769 19788 20192 35913 35913 0.18337588164467888 KYRWPHTI 8 Unmodified _KYRWPHTI_ 0 0 0 ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B ENSG00000141434|ENST00000269202|MEP1B MSMS AL20221201_MKP_PDAC_01 4 550.805908203125 2 550.803626 1099.5927 NaN NaN NaN NaN NaN NaN NaN 20.015 1 17.359 16.859 17.859 -2.6564 0 0 0 0.97444 1 10640 10640 0.69038 0 1 30213 5328 19789 20193 35914 35914 0.04688575153932106 KYSAAIALL 9 Unmodified _KYSAAIALL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;ENST00000523302.1_1_8:101225364-101237414:+|nuORF ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2898254394531 2 475.289485 948.564418 0.4885 0.00023218 -0.38406 -0.00018254 0.10444 4.9641E-05 475.2893327764956 61.902 0.3275 61.414 61.222 61.55 -0.48764 38 15 3 0 0 0 0.078314 1 33668 33668 38.176 12.776 1 5625600 30214 2210 19790 20194 35915 35915 0.08807832453976516 KYSAAIALL 9 Unmodified _KYSAAIALL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;ENST00000523302.1_1_8:101225364-101237414:+|nuORF ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2893981933594 2 475.289485 948.564418 0.24261 0.00011531 0.2124 0.00010095 0.45501 0.00021626 475.2895415867653 61.499 0.31567 61.467 61.313 61.629 -0.032787 37 15 3 0 0 0 0.10247 1 33542 33542 32.786 7.3864 1 16382000 30215 2210 19790 20194 35916 35916 0.08807832453976516 KYSAAIALL 9 Unmodified _KYSAAIALL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;ENST00000523302.1_1_8:101225364-101237414:+|nuORF ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2893371582031 2 475.289485 948.564418 0.51897 0.00024666 0.48948 0.00023264 1.0084 0.0004793 475.28966540297876 66.794 0.47632 60.619 60.332 60.808 -6.1757 44 26 2 0 0 0 0.025842 2 43379 43379;43511 57.722 9.3761 1 34124000 30216 2210 19790 20194 35917;35918 35917 0.08807832453976516 KYSDTIAEL 9 Unmodified _KYSDTIAEL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.267822265625 2 520.268947 1038.52334 -0.14874 -7.7386E-05 -0.067789 -3.5269E-05 -0.21653 -0.00011265 520.2689590540812 44.871 0.2669 44.871 44.749 45.016 0 20 13 2 0 0 0 0.011671 1 24429 24429 75.761 20.987 1 21225000 30217 3672 19791 20195 35919 35919 0.005620266238793192 KYSDVSGLL 9 Unmodified _KYSDVSGLL_ 0 0 0 ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C ENSG00000153391|ENST00000334598|INO80C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2666931152344 2 491.266207 980.517862 0.51638 0.00025368 0.95453 0.00046893 1.4709 0.00072261 491.2662781823896 49.383 0.32113 49.383 49.215 49.536 0 39 14 4 0 0 0 0.017075 1 27143 27143 66.457 30.33 1 29504000 30218 6261;16281 19792 20196 35920 35920 0.026823478320466165 KYSDVSGLL 9 Unmodified _KYSDVSGLL_ 0 0 0 ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-3|INO80C ENSG00000153391|ENST00000334598|INO80C MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2663269042969 2 491.266207 980.517862 0.99289 0.00048777 0.80355 0.00039475 1.7964 0.00088253 491.26663259715644 55.637 0.37115 49.716 49.49 49.861 -5.9211 58 21 3 0 0 0 0.023481 2 35326 35326;35461 60.074 23.947 1 65662000 30219 6261;16281 19792 20196 35921;35922 35921 0.026823478320466165 KYSEGEIRF 9 Unmodified _KYSEGEIRF_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.788330078125 2 564.787838 1127.56112 -0.26283 -0.00014844 0.076472 4.3191E-05 -0.18636 -0.00010525 564.7880580713182 30.777 0.22356 30.777 30.628 30.852 0 18 10 2 0 0 0 0.078314 1 15977 15977 38.176 10.547 1 2849100 30220 16144 19793 20197 35923 35923 0.002445376093419327 KYSEIQQLL 9 Unmodified _KYSEIQQLL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3141479492188 2 561.313689 1120.61282 0.60264 0.00033827 0.63418 0.00035598 1.2368 0.00069425 561.3136756129725 57.772 0.3471 57.772 57.597 57.944 0 38 15 4 0 0 0 0.020973 2 32221 32115;32221 62.573 23.32 1 8779700 30221 1070 19794 20198 35924;35925 35925 0.05734281303261923 KYSEIQQLL 9 Unmodified _KYSEIQQLL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3148803710938 2 561.313689 1120.61282 0.46077 0.00025864 0.29556 0.0001659 0.75633 0.00042454 561.8151182864747 58.199 0.34985 57.71 57.513 57.863 -0.48974 56 16 4 0 0 0 0.020973 1 31654 31654 62.573 20.733 1 20018000 30222 1070 19794 20198 35926 35926 0.05734281303261923 KYSEIQQLL 9 Unmodified _KYSEIQQLL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MSMS AL20221201_MKP_PDAC_01 4 561.3139038085938 2 561.313689 1120.61282 NaN NaN NaN NaN NaN NaN NaN 63.469 1 57.293 56.793 57.793 -6.1757 0 0 0 0.030047 1 41035 41035 66.457 24.617 1 30223 1070 19794 20198 35927 35927 0.05734281303261923 KYSELGHPFGY 11 Unmodified _KYSELGHPFGY_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.8158569335938 2 649.31422 1296.61389 0.14391 9.3443E-05 3.1941 0.002074 3.338 0.0021674 650.3178876814036 67.532 0.14558 67.532 67.437 67.583 0 12 6 3 0 0 0 0.50515 1 37677 37677 16.149 2.2431 1 975870 30224 2065 19795 20199 35928 35928 -0.022555043278543963 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2796630859375 2 543.279315 1084.54408 -0.60631 -0.0003294 0.36902 0.00020048 -0.23729 -0.00012892 543.2795408093774 55.562 0.53712 55.562 55.218 55.756 0 87 37 4 0 0 0 0.032796 2 30779 30779;30885 53.833 17.213 1 140360000 30225 1039;1938 19796 20200 35929;35930 35929 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2789916992188 2 543.279315 1084.54408 -0.6656 -0.0003616 -0.87786 -0.00047692 -1.5435 -0.00083853 543.2790459573823 56.027 0.49818 55.541 55.23 55.728 -0.48554 59 24 3 0 0 0 0.020973 2 30390 30390;30491 62.573 8.7399 1 38647000 30226 1039;1938 19796 20200 35931;35932 35931 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.27880859375 2 543.279315 1084.54408 0.78222 0.00042496 0.062113 3.3745E-05 0.84433 0.00045871 543.2794391833062 61.783 0.5386 55.607 55.367 55.905 -6.1757 93 28 4 0 0 0 0.032796 2 39993 39857;39993 53.833 9.9745 1 308220000 30227 1039;1938 19796 20200 35933;35934 35934 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2799072265625 2 543.279315 1084.54408 2.0578 0.001118 0.58426 0.00031742 2.642 0.0014354 543.2794307060518 62.728 0.41575 56.552 56.322 56.737 -6.1757 28 20 2 0 0 0 0.044011 1 40601 40601 47.749 5.9091 1 6752800 30228 1039;1938 19796 20200 35935 35935 0.005186170035358373 KYSEVFEAI 9 Unmodified _KYSEVFEAI_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENST00000608490.1_1_20:485716-489204:-|nuORF;ENST00000460062.6_1_20:480238-524362:-|nuORF;ENST00000609606.5_1_20:480440-489246:-|nuORF;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 543.279315 1084.54408 -0.22238 -0.00012082 -0.17976 -9.7658E-05 -0.40214 -0.00021847 543.2792209267226 55.697 0.18806 55.628 55.517 55.705 -0.068741 0.043523 -7.6813E-05 NaN 62.573 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 5204100 30229 1039;1938 19796 20200 0.005186170035358373 KYSFLPYQL 9 Unmodified _KYSFLPYQL_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8118896484375 2 579.813325 1157.6121 0.70237 0.00040724 -0.11084 -6.4268E-05 0.59153 0.00034298 579.8131392929654 73.849 0.35823 73.893 73.692 74.05 0.043983 47 16 4 0 0 0 0.040337 2 40657 40657;40764 53.404 17.36 1 23333000 30230 2139 19797 20201 35936;35937 35936 0.039594866541847296 KYSFLPYQL 9 Unmodified _KYSFLPYQL_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8135986328125 2 579.813325 1157.6121 0.45752 0.00026527 0.54847 0.00031801 1.006 0.00058329 579.8133806990816 92.865 0.48531 86.689 86.431 86.916 -6.1757 62 30 3 0 0 0 0.013396 2 61323 61323;61452 76.825 41.893 1 36997000 30231 2139 19797 20201 35938;35939 35938 0.039594866541847296 KYSGEFREI 9 Unmodified _KYSGEFREI_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2;ENST00000477642.5_1_2:38525261-38527422:-|nuORF nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.1978759765625 3 376.860984 1127.56112 1.8854 0.00071052 2.436 0.00091805 4.3214 0.0016286 377.19683617236126 33.802 0.45578 29.816 29.589 30.045 -3.9853 59 24 3 0 0 0 0.32235 1 19394 19394 11.518 7.3284 1 10431000 30232 3470 19798 20202 35940 35940 0.0024453760931919533 KYSGVFSFL 9 Unmodified _KYSGVFSFL_ 0 0 0 nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000439308.6_1_22:50656167-50658651:-|nuORF;ENST00000491449.5_1_22:50656167-50658502:-|nuORF;ENST00000498611.5_1_22:50656616-50657925:-|nuORF nc|ENSG00000128159|Q96RT7-2|TUBGCP6 nc|ENSG00000128159|Q96RT7-2|TUBGCP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2800903320312 2 524.279118 1046.54368 0.81586 0.00042774 1.0828 0.00056767 1.8986 0.00099541 524.2795580347342 82.804 0.3031 82.866 82.691 82.994 0.061996 24 11 3 0 0 0 0.07087 1 45825 45825 39.95 15.276 1 3476800 30233 4048 19799 20203 35941 35941 0.022272420743320254 KYSGVFSFL 9 Unmodified _KYSGVFSFL_ 0 0 0 nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000439308.6_1_22:50656167-50658651:-|nuORF;ENST00000491449.5_1_22:50656167-50658502:-|nuORF;ENST00000498611.5_1_22:50656616-50657925:-|nuORF nc|ENSG00000128159|Q96RT7-2|TUBGCP6 nc|ENSG00000128159|Q96RT7-2|TUBGCP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2809448242188 2 524.279118 1046.54368 0.702 0.00036805 0.28723 0.00015059 0.98923 0.00051863 524.2795635084045 98.627 0.11845 92.451 92.389 92.508 -6.1757 12 8 2 0 0 0 0.023481 1 65450 65450 60.074 7.8056 1 29959000 30234 4048 19799 20203 35942 35942 0.022272420743320254 KYSGVLSSI 9 Unmodified _KYSGVLSSI_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2682800292969 2 477.26875 952.522947 1.2989 0.0006199 -1.5866 -0.00075722 -0.28771 -0.00013732 477.26793712653546 54.212 0.39188 48.347 48.139 48.531 -5.8653 41 22 2 0 0 0 0.0093064 1 34346 34346 83.429 31.799 1 15850000 30235 4927 19800 20204 35943 35943 0.04478651694671498 KYSHFQHLL 9 Unmodified _KYSHFQHLL_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5458374023438 3 391.545219 1171.61383 -0.21068 -8.2491E-05 0.74694 0.00029246 0.53626 0.00020997 391.54556351208277 30.554 0.30283 30.584 30.456 30.759 0.030104 30 13 3 0 0 0 0.1685 1 15952 15952 26.268 13.396 1 4179000 30236 7063 19801 20205 35944 35944 0.03488540462808487 KYSHFQHLL 9 Unmodified _KYSHFQHLL_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.545219 1171.61383 0.46255 0.00018111 -0.13314 -5.2131E-05 0.3294 0.00012898 391.87939993760517 30.806 0.098927 30.703 30.618 30.717 -0.10269 0.12247 -0.00085639 NaN 26.268 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 993520 30237 7063 19801 20205 0.03488540462808487 KYSHFQHLL 9 Unmodified _KYSHFQHLL_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 391.545219 1171.61383 1.109 0.00043421 0.041944 1.6423E-05 1.1509 0.00045064 391.54491341199883 34.549 0.28348 30.454 30.384 30.668 -4.0951 -0.12631 -0.00065072 NaN 26.268 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6032200 30238 7063 19801 20205 0.03488540462808487 KYSKCIEPMFF 11 Unmodified _KYSKCIEPMFF_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.893310546875 3 464.894532 1391.66177 0.34803 0.0001618 -1.6062 -0.00074669 -1.2581 -0.00058489 464.8938079169753 39.612 0.16658 39.624 39.528 39.695 0.011452 12 7 2 0 0 0 0.69509 1 21121 21121 4.7159 1.6437 1 1463600 + 30239 18474 19802 20206 35945 35945 -0.01839889723714805 KYSKRFPEL 9 Unmodified _KYSKRFPEL_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8883056640625 3 389.888874 1166.64479 -0.46141 -0.0001799 -1.06 -0.00041329 -1.5214 -0.00059319 389.88847283865573 29.554 0.19165 29.554 29.47 29.662 0 24 13 2 0 0 0 0.24903 1 15313 15313 19.626 3.3514 1 7308100 30240 2342 19803 20207 35946 35946 0.06813693777030494 KYSKRFPEL 9 Unmodified _KYSKRFPEL_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.329833984375 2 584.329673 1166.64479 1.0374 0.00060621 0.15787 9.225E-05 1.1953 0.00069846 584.3297381510919 32.277 0.3506 28.421 28.284 28.635 -3.8562 46 20 3 0 0 0 0.0069133 1 18351 18351 110.79 57.389 1 29695000 30241 2342 19803 20207 35947 35947 0.06813693777030494 KYSKRFPEL 9 Unmodified _KYSKRFPEL_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8892822265625 3 389.888874 1166.64479 1.3944 0.00054366 0.012523 4.8827E-06 1.4069 0.00054854 389.8888041689408 32.31 0.53421 28.453 28.198 28.732 -3.8562 106 30 5 0 0 0 0.34748 1 18540 18540 14.957 0 1 388570000 30242 2342 19803 20207 35948 35948 0.06813693777030494 KYSKRFPEL 9 Unmodified _KYSKRFPEL_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MSMS AL20221201_MKP_PDAC_01 4 389.8898010253906 3 389.888874 1166.64479 NaN NaN NaN NaN NaN NaN NaN 65.857 1 59.681 59.181 60.181 -6.1757 0 0 0 0.50458 1 42785 42785 15.739 0.78146 1 30243 2342 19803 20207 35949 35949 0.06813693777030494 KYSKTLTEHL 10 Unmodified _KYSKTLTEHL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2272338867188 3 407.227556 1218.66084 -0.4254 -0.00017323 -0.32077 -0.00013063 -0.74617 -0.00030386 407.22749743219276 22.002 0.12751 22.002 21.954 22.082 0 18 11 2 0 0 0 0.69385 1 11188 11188 3.5871 2.1319 1 1378300 30244 1080 19804 20208 35950 35950 0.06025355223277984 KYSKTLTEHL 10 Unmodified _KYSKTLTEHL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5620422363281 3 407.227556 1218.66084 -0.17706 -7.2105E-05 0.48658 0.00019815 0.30952 0.00012604 407.2278361437195 21.881 0.1736 21.904 21.785 21.958 0.022896 13 7 2 0 0 0 0.71981 1 11102 11102 0.69767 0.19171 1 432370 30245 1080 19804 20208 35951 35951 0.06025355223277984 KYSKTLTEHL 10 Unmodified _KYSKTLTEHL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2274475097656 3 407.227556 1218.66084 0.24535 9.9915E-05 -0.064348 -2.6204E-05 0.18101 7.3711E-05 407.22749947246035 24.897 0.27339 22.014 21.871 22.144 -2.8831 34 18 3 0 0 0 0.032752 1 13559 13559 66.683 42.719 1 14586000 30246 1080 19804 20208 35952 35952 0.06025355223277984 KYSLMVVCI 9 Oxidation (M) _KYSLM(Oxidation (M))VVCI_ KYSLM(1)VVCI KYSLM(55)VVCI 0 0 1 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|237|3|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|237|3|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|237|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 536.28173828125 2 536.282489 1070.55042 NaN NaN NaN NaN NaN NaN NaN 28.879 1 25.73 25.23 26.23 -3.1482 0 0 0 0.056448 1 16145 16145 54.774 10.915 1 30247 15973 19805 20209 35953 35953 1783 0.017970956390399806 KYSLVKNKI 9 Unmodified _KYSLVKNKI_ 0 0 0 ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16 ENST00000474991.1_1_1:153580188-153585458:-|nuORF ENST00000474991.1_1_1:153580188-153585458:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.8975524902344 3 364.89737 1091.67028 -0.27671 -0.00010097 0.36022 0.00013144 0.083507 3.0472E-05 364.8975207650116 21.328 0.1586 21.357 21.283 21.441 0.028357 12 7 2 0 0 0 0.12424 1 10816 10816 28.495 18.344 1 1613200 30248 9679 19806 20210 35954 35954 0.12811168299458586 KYSLVKNKI 9 Unmodified _KYSLVKNKI_ 0 0 0 ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16 ENST00000474991.1_1_1:153580188-153585458:-|nuORF ENST00000474991.1_1_1:153580188-153585458:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8974609375 3 364.89737 1091.67028 0.070523 2.5734E-05 -0.59992 -0.00021891 -0.52939 -0.00019317 364.8971432974376 21.332 0.22847 21.346 21.252 21.481 0.013796 125 36 4 0 0 0 0.011671 2 10877 10877;10974 61.09 16.698 1 73089000 30249 9679 19806 20210 35955;35956 35955 0.12811168299458586 KYSLVKNKI 9 Unmodified _KYSLVKNKI_ 0 0 0 ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16 ENST00000474991.1_1_1:153580188-153585458:-|nuORF ENST00000474991.1_1_1:153580188-153585458:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8977661132812 3 364.89737 1091.67028 0.91635 0.00033437 -0.83826 -0.00030588 0.078092 2.8496E-05 364.8969605083391 24.344 0.58528 21.517 21.248 21.834 -2.8273 128 32 5 0 0 0 0.0087807 3 13144 13144;13256;13361 103.82 27.464 1 553600000 30250 9679 19806 20210 35957;35958;35959 35957 0.12811168299458586 KYSLVKNKI 9 Unmodified _KYSLVKNKI_ 0 0 0 ENST00000474991.1_1_1:153580188-153585458:-|nuORF;ENSG00000188643|ENST00000368706|S100A16 ENST00000474991.1_1_1:153580188-153585458:-|nuORF ENST00000474991.1_1_1:153580188-153585458:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8426513671875 2 546.842416 1091.67028 0.18354 0.00010037 -0.45391 -0.00024822 -0.27037 -0.00014785 546.8422197857825 24.324 0.38391 21.496 21.34 21.724 -2.8273 54 21 3 0 0 0 0.0019086 2 13181 13181;13295 133.05 53.456 1 25485000 30251 9679 19806 20210 35960;35961 35960 0.12811168299458586 KYSMDTYVF 9 Unmodified _KYSMDTYVF_ 0 0 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2655029296875 2 577.26535 1152.51615 0.56656 0.00032705 -0.56797 -0.00032787 -0.0014155 -8.1712E-07 577.2645240445091 57.39 0.22997 56.901 56.816 57.046 -0.48974 15 10 2 0 0 0 0.21643 1 31199 31199 21.537 4.5947 1 2395000 30252 6090 19807 20211 35962 35962 -0.054010292482416844 KYSMDTYVF 9 Unmodified _KYSMDTYVF_ 0 0 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.266357421875 2 577.26535 1152.51615 1.0416 0.0006013 -0.50192 -0.00028974 0.53972 0.00031156 577.2653975611343 63.044 0.52278 56.869 56.608 57.13 -6.1757 72 27 4 0 0 0 0.15471 1 40750 40750 27.629 6.0918 1 53059000 30253 6090 19807 20211 35963 35963 -0.054010292482416844 KYSMDTYVF 9 Oxidation (M) _KYSM(Oxidation (M))DTYVF_ KYSM(1)DTYVF KYSM(54)DTYVF 0 0 1 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-7|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2625122070312 2 585.262807 1168.51106 1.0027 0.00058687 0.089523 5.2394E-05 1.0923 0.00063926 585.262910858388 50.718 0.47746 45.069 44.819 45.297 -5.649 42 29 2 0 0 0 0.032796 2 31773 31773;31911 53.833 33.379 1 35218000 30254 6090 19807 20212 35964;35965 35964 1082 -0.06645333110850515 KYSNDLYEL 9 Unmodified _KYSNDLYEL_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7799682617188 2 572.779679 1143.5448 0.13477 7.7195E-05 0.075635 4.3322E-05 0.21041 0.00012052 572.7797856869266 48.305 0.32085 48.305 48.112 48.433 0 46 15 4 0 0 0 0.1773 1 26446 26446 25.399 8.2864 1 24362000 30255 8230 19808 20213 35966 35966 -0.021225883474244256 KYSNMEQSLF 10 Oxidation (M) _KYSNM(Oxidation (M))EQSLF_ KYSNM(1)EQSLF KYSNM(65)EQSLF 0 0 1 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.7896728515625 2 631.789721 1261.56489 -0.31236 -0.00019735 -1.0816 -0.00068332 -1.3939 -0.00088067 631.788790253323 40.837 0.3092 40.837 40.639 40.949 0 57 33 2 0 0 0 0.035244 1 21908 21908 65.474 31.371 1 20665000 30256 529 19809 20214 35967 35967 73 -0.055431606791216836 KYSNMEQSLF 10 Oxidation (M) _KYSNM(Oxidation (M))EQSLF_ KYSNM(1)EQSLF KYSNM(74)EQSLF 0 0 1 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7880249023438 2 631.789721 1261.56489 0.20466 0.0001293 0.46377 0.00029301 0.66844 0.00042231 631.7895544469002 45.329 0.36073 40.374 40.164 40.524 -4.9549 44 24 2 0 0 0 0.021614 2 27856 27702;27856 74.2 34.25 1 26785000 30257 529 19809 20214 35968;35969 35969 73 -0.055431606791216836 KYSNMEQSLF 10 Unmodified _KYSNMEQSLF_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2957153320312 2 623.792263 1245.56997 0.33431 0.00020854 0.3746 0.00023367 0.70891 0.00044221 623.7923506064348 56.709 0.4423 50.732 50.515 50.957 -5.9769 54 25 3 0 0 0 0.0069983 2 36116 36116;36252 93.166 39.333 1 40008000 30258 529 19809 20215 35970;35971 35970 -0.04298856816512853 KYSPFVVSF 9 Unmodified _KYSPFVVSF_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2870483398438 2 537.286943 1072.55933 0.3925 0.00021088 -0.18462 -9.9196E-05 0.20787 0.00011169 537.2867413078789 71.361 0.34653 70.884 70.726 71.072 -0.47736 45 14 4 0 0 0 0.033587 1 39029 39029 53.404 22.767 1 5157100 30259 1436 19810 20216 35972 35972 0.0259552859138239 KYSPFVVSF 9 Unmodified _KYSPFVVSF_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2841796875 2 537.286943 1072.55933 1.0675 0.00057355 -0.96084 -0.00051625 0.10664 5.7298E-05 537.2862771414293 70.793 0.87482 70.828 70.549 71.424 0.035515 134 39 6 0 0 0 0.010301 3 38877 38877;38980;39089 79.596 31.25 1 412160000 30260 1436 19810 20216 35973;35974;35975 35973 0.0259552859138239 KYSPFVVSF 9 Unmodified _KYSPFVVSF_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.287353515625 2 537.286943 1072.55933 0.47056 0.00025282 0.31448 0.00016897 0.78504 0.00042179 537.2872091331903 85.596 0.99943 79.42 79.037 80.037 -6.1757 102 58 2 0 0 0 0.1685 1 56596 56596 26.268 11.43 1 36099000 30261 1436 19810 20216 35976 35976 0.0259552859138239 KYSPLMPLPE 10 Unmodified _KYSPLMPLPE_ 0 0 0 REV__ENSG00000131747|ENST00000423485|TOP2A REV__ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8121337890625 2 587.812467 1173.61038 0.43206 0.00025397 -0.252 -0.00014813 0.18007 0.00010584 587.8121879705213 74.305 0.5638 74.349 74.05 74.614 0.043976 96 24 5 0 0 0 0.38092 1 40962 40962 22.736 2.2827 1 152620000 + 30262 19809 19811 20217 35977 35977 0.030521095739231896 KYSPNCKLL 9 Carbamidomethyl (C) _KYSPNC(Carbamidomethyl (C))KLL_ KYSPNC(1)KLL KYSPNC(110)KLL 0 1 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8019409179688 2 561.802434 1121.59032 1.0143 0.00056983 0.063051 3.5422E-05 1.0773 0.00060525 561.8021708724834 32.623 0.39113 28.767 28.533 28.924 -3.8562 41 20 3 0 0 0 0.0087224 1 18559 18559 107.1 55.47 1 15237000 30263 4597 19812 20218 35978 35978 473 0.0343835863395725 KYSPNCKLL 9 Carbamidomethyl (C) _KYSPNC(Carbamidomethyl (C))KLL_ KYSPNC(1)KLL KYSPNC(61)KLL 0 1 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8712158203125 3 374.870715 1121.59032 1.345 0.00050421 0.016013 6.003E-06 1.361 0.00051021 374.87072500332636 32.617 0.37955 28.761 28.565 28.945 -3.8562 55 19 4 0 0 0 0.022461 1 18658 18658 61.09 29.822 1 27634000 30264 4597 19812 20218 35979 35979 473 0.0343835863395725 KYSPNCKLLI 10 Carbamidomethyl (C) _KYSPNC(Carbamidomethyl (C))KLLI_ KYSPNC(1)KLLI KYSPNC(100)KLLI 0 1 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3450927734375 2 618.344466 1234.67438 0.55849 0.00034534 0.10421 6.444E-05 0.6627 0.00040978 618.3446436499006 45.677 0.29356 40.722 40.555 40.848 -4.9549 41 19 3 0 0 0 0.0042881 1 28011 28011 100.71 67.923 1 10804000 30265 4597 19813 20219 35980 35980 473 0.06642889730869683 KYSPNCKLLI 10 Carbamidomethyl (C) _KYSPNC(Carbamidomethyl (C))KLLI_ KYSPNC(1)KLLI KYSPNC(57)KLLI 0 1 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.9005432128906 3 412.565403 1234.67438 0.92368 0.00038108 0.3233 0.00013338 1.247 0.00051446 412.5656226558358 45.654 0.38969 40.699 40.504 40.894 -4.9549 60 25 3 0 0 0 0.05292 1 28054 28054 57.204 35.404 1 22813000 30266 4597 19813 20219 35981 35981 473 0.06642889730869683 KYSPPIHF 8 Unmodified _KYSPPIHF_ 0 0 0 REV__nc|ENSG00000166181|Q9BZZ5-5|API5 REV__nc|ENSG00000166181|Q9BZZ5-5|API5 MSMS AL20221201_MKP_PDAC_01 4 494.7682189941406 2 494.766178 987.517802 NaN NaN NaN NaN NaN NaN NaN 79.256 1 73.08 72.58 73.58 -6.1757 0 0 0 0.65904 1 51928 51928 30.225 0 1 + 30267 22091 19814 20220 35982 35982 0.023543926227034717 KYSPSDPAF 9 Unmodified _KYSPSDPAF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522774.1_1_8:37720415-37728147:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000523182.5_1_8:37720415-37730726:-|nuORF nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MSMS AL20221201_MKP_PDAC_01 4 506.2442626953125 2 506.242732 1010.47091 NaN NaN NaN NaN NaN NaN NaN 38.256 1 33.887 33.387 34.387 -4.3689 0 0 0 0.18351 1 22543 22543 32.786 5.902 1 30268 6474 19815 20221 35983 35983 -0.033905117191011414 KYSQILSHF 9 Unmodified _KYSQILSHF_ 0 0 0 ENSG00000162891|ENST00000367098|IL20 ENSG00000162891|ENST00000367098|IL20 ENSG00000162891|ENST00000367098|IL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.86962890625 3 374.869591 1121.58694 -0.2693 -0.00010095 0.87439 0.00032778 0.6051 0.00022683 374.8699003233181 21.288 0.093681 21.316 21.261 21.355 0.028357 7 4 2 0 0 0 0.52844 1 10813 10813 5.7319 0 1 607730 30269 6927 19816 20222 35984 35984 0.031014318516099593 KYSRDCVWVF 10 Unmodified _KYSRDCVWVF_ 0 0 0 REV__ENSG00000255423|ENST00000533473|EBLN2 REV__ENSG00000255423|ENST00000533473|EBLN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8822631835938 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 21.92 1 21.934 21.434 22.434 0.013796 0 0 0 1.0019 1 11246 11246 0.15932 0 1 + 30270 24537 19817 20223 35985 35985 -0.01606853963062349 KYSRHRITI 9 Unmodified _KYSRHRITI_ 0 0 0 ENSG00000182117|ENST00000328848|NOP10;ENST00000557912.1_1_15:34634171-34635317:-|nuORF ENSG00000182117|ENST00000328848|NOP10 ENSG00000182117|ENST00000328848|NOP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8999633789062 3 391.899885 1172.67783 0.80757 0.00031649 0.33857 0.00013269 1.1461 0.00044917 391.89997901345583 17.838 0.25649 15.251 15.106 15.362 -2.5866 60 26 3 0 0 0 0.50598 1 9401 9401 7.1017 0.90987 1 7621300 30271 9018 19818 20224 35986 35986 0.09839320619744285 KYSSNLGNF 9 Unmodified _KYSSNLGNF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2520751953125 2 515.253631 1028.49271 0.50308 0.00025921 -2.1367 -0.0011009 -1.6336 -0.00084171 515.2518456122405 36.923 0.18099 36.923 36.837 37.018 0 20 8 3 0 0 0 0.0094097 1 19627 19627 82.529 51.893 1 4310500 30272 7446 19819 20225 35987 35987 -0.020397069705268223 KYSSNLGNF 9 Unmodified _KYSSNLGNF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2535400390625 2 515.253631 1028.49271 -0.28974 -0.00014929 3.5684 0.0018386 3.2786 0.0016893 515.2543551335485 37.194 0.17055 36.923 36.821 36.992 -0.27133 19 6 4 0 0 0 0.085319 1 19540 19540 36.506 14.76 1 2190300 30273 7446 19819 20225 35988 35988 -0.020397069705268223 KYSTIEFDF 9 Unmodified _KYSTIEFDF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7779541015625 2 575.276772 1148.53899 0.59219 0.00034067 0.042347 2.4361E-05 0.63453 0.00036503 575.2773208365903 66.831 0.19507 66.831 66.701 66.896 0 14 8 2 0 0 0 0.11784 1 37270 37270 31.268 5.869 1 1119500 30274 5129 19820 20226 35989 35989 -0.02933686859091722 KYSTIEFDF 9 Unmodified _KYSTIEFDF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2777099609375 2 575.276772 1148.53899 0.68247 0.00039261 1.2752 0.00073358 1.9576 0.0011262 575.2769385560971 62.162 0.30518 55.986 55.905 56.21 -6.1757 37 17 3 0 0 0 0.23158 1 40103 40103 20.454 0 1 24668000 30275 5129 19820 20226 35990 35990 -0.02933686859091722 KYSTLHTQSA 10 Unmodified _KYSTLHTQSA_ 0 0 0 nc|ENSG00000102181|Q8TCZ2-6|CD99L2;nc|ENSG00000102181|Q8TCZ2-3|CD99L2;nc|ENSG00000102181|Q8TCZ2-2|CD99L2;ENSG00000102181|ENST00000370377|CD99L2;nc|ENSG00000102181|Q8TCZ2-5|CD99L2 nc|ENSG00000102181|Q8TCZ2-6|CD99L2 nc|ENSG00000102181|Q8TCZ2-6|CD99L2 MSMS AL20221201_MKP_PDAC_01 4 379.1972045898438 3 379.196256 1134.56694 NaN NaN NaN NaN NaN NaN NaN 24.285 1 21.458 20.958 21.958 -2.8273 0 0 0 0.85122 1 13209 13209 5.7834 0 1 30276 2025 19821 20227 35991 35991 0.005036361210159157 KYSVGIHNL 9 Unmodified _KYSVGIHNL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7864990234375 2 515.787641 1029.56073 -0.41522 -0.00021417 -0.1693 -8.7321E-05 -0.58452 -0.00030149 515.7877104277142 34.55 0.21404 34.55 34.422 34.636 0 17 10 2 0 0 0 0.017075 1 18202 18202 66.457 34.151 1 3722000 30277 9407 19822 20228 35992 35992 0.04713162680127425 KYSVGIHNL 9 Unmodified _KYSVGIHNL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7868041992188 2 515.787641 1029.56073 -0.34612 -0.00017852 0.075476 3.893E-05 -0.27064 -0.0001396 515.7876095824641 34.665 0.19311 34.474 34.371 34.564 -0.19132 21 8 3 0 0 0 0.0038489 1 18111 18111 122.18 69.911 1 11118000 30278 9407 19822 20228 35993 35993 0.04713162680127425 KYSVGIHNL 9 Unmodified _KYSVGIHNL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.787353515625 2 515.787641 1029.56073 0.25504 0.00013155 0.55968 0.00028868 0.81473 0.00042023 515.7878748589885 34.434 0.21307 34.461 34.327 34.54 0.027401 19 9 3 0 0 0 0.0030184 1 18140 18140 126.57 65.208 1 2281800 30279 9407 19822 20228 35994 35994 0.04713162680127425 KYSVGIHNL 9 Unmodified _KYSVGIHNL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.787353515625 2 515.787641 1029.56073 0.48702 0.0002512 0.14239 7.3444E-05 0.62941 0.00032464 515.7876676360706 38.463 0.46383 34.094 33.855 34.319 -4.3689 61 29 3 0 0 0 0.0038489 2 22601 22601;22728 122.18 68.604 1 44164000 30280 9407 19822 20228 35995;35996 35995 0.04713162680127425 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.923095703125 3 440.922244 1319.7449 0.57294 0.00025262 -0.15906 -7.0134E-05 0.41388 0.00018249 440.92216738208214 49.35 0.31887 48.973 48.816 49.135 -0.37622 52 15 5 0 0 0 0.0011221 2 26482 26482;26593 81.923 65.649 1 42387000 30281 8367 19823 20229 35997;35998 35997 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8804321289062 2 660.879727 1319.7449 0.63125 0.00041718 -0.075772 -5.0076E-05 0.55548 0.00036711 660.8797505876167 49.331 0.23757 48.959 48.84 49.078 -0.37171 30 11 3 0 0 0 2.1986E-12 1 26504 26504 139.98 101.81 1 10803000 30282 8367 19823 20229 35999 35999 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.9220886230469 3 440.922244 1319.7449 0.51964 0.00022912 0.50915 0.00022449 1.0288 0.00045361 440.9223556215247 49 0.36581 48.956 48.81 49.175 -0.04369 50 17 4 0 0 0 0.0057099 1 26432 26432 74.094 57.819 1 24580000 30283 8367 19823 20229 36000 36000 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8790283203125 2 660.879727 1319.7449 0.57135 0.00037759 -0.047517 -3.1403E-05 0.52383 0.00034619 660.879536459676 48.994 0.22354 48.95 48.847 49.07 -0.043694 25 10 3 0 0 0 5.0626E-15 1 26454 26454 157.24 111.5 1 5948600 30284 8367 19823 20229 36001 36001 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2550964355469 3 440.922244 1319.7449 0.95479 0.00042099 -0.34514 -0.00015218 0.60965 0.00026881 441.2562447382479 54.546 0.31411 48.68 48.485 48.799 -5.8653 34 19 2 0 0 0 0.00037182 1 34546 34546 90.104 73.829 1 28406000 30285 8367 19823 20229 36002 36002 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8799438476562 2 660.879727 1319.7449 0.45623 0.00030151 0.009984 6.5982E-06 0.46622 0.00030811 660.8797921185583 54.514 0.30351 48.649 48.516 48.819 -5.8653 28 18 2 0 0 0 2.7131E-36 1 34570 34570 209.96 133.14 1 19497000 30286 8367 19823 20229 36003 36003 0.09781886320206468 KYSVINEINKI 11 Unmodified _KYSVINEINKI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.9216918945312 3 440.922244 1319.7449 0.84491 0.00037254 -0.56052 -0.00024714 0.2844 0.0001254 440.9219781719007 76.406 1.7198 70.231 68.801 70.521 -6.1757 132 94 2 0 0 0 1.2727E-08 9 49856 49076;49208;49342;49485;49613;49732;49856;49966;50102 107.51 91.975 1 23694000 30287 8367 19823 20229 36004;36005;36006;36007;36008;36009;36010;36011;36012 36010 0.09781886320206468 KYSYYPRWLQD 11 Unmodified _KYSYYPRWLQD_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2519836425781 3 506.917381 1517.73031 -0.8658 -0.00043889 0.51759 0.00026238 -0.34821 -0.00017651 506.9178013846379 19.3 0.20239 19.323 19.205 19.407 0.023106 56 13 6 0 0 0 0.73992 1 9682 9682 0.50596 0 1 12167000 + 30288 22782 19824 20230 36013 36013 -0.007841858279562075 KYTAQMYEL 9 Oxidation (M) _KYTAQM(Oxidation (M))YEL_ KYTAQM(1)YEL KYTAQM(50)YEL 0 0 1 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2786254882812 2 581.776082 1161.53761 0.51959 0.00030228 0.64239 0.00037373 1.162 0.00067601 581.7767233104488 36.847 0.26729 36.847 36.71 36.977 0 33 12 4 0 0 0 0.040683 1 19537 19537 49.554 29.101 1 8432500 30289 451 19825 20231 36014 36014 59 -0.036696442195079726 KYTAVVKMI 9 Oxidation (M) _KYTAVVKM(Oxidation (M))I_ KYTAVVKM(1)I KYTAVVKM(120)I 0 0 1 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN;ENST00000460089.1_1_10:7803378-7811304:-|nuORF ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.81005859375 2 534.809728 1067.6049 0.13152 7.0339E-05 0.0060799 3.2516E-06 0.1376 7.3591E-05 534.8097073560467 28.706 0.22506 28.735 28.621 28.846 0.029564 13 8 2 0 0 0 0.0048194 1 14953 14953 117.76 63.928 1 4358100 30290 6133 19826 20232 36015 36015 1093 0.07380430782109215 KYTAVVKMI 9 Oxidation (M) _KYTAVVKM(Oxidation (M))I_ KYTAVVKM(1)I KYTAVVKM(50)I 0 0 1 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN;ENST00000460089.1_1_10:7803378-7811304:-|nuORF ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8099365234375 2 534.809728 1067.6049 1.014 0.00054229 -0.32739 -0.00017509 0.68661 0.00036721 534.8095640502501 32.351 0.31869 28.495 28.352 28.67 -3.8562 29 18 2 0 0 0 0.040733 1 18421 18421 49.527 7.5717 1 9353700 30291 6133 19826 20232 36016 36016 1093 0.07380430782109215 KYTAVVKMI 9 Oxidation (M) _KYTAVVKM(Oxidation (M))I_ KYTAVVKM(1)I KYTAVVKM(46)I 0 0 1 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN;ENST00000460089.1_1_10:7803378-7811304:-|nuORF ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8760681152344 3 356.875577 1067.6049 1.7539 0.00062593 0.018242 6.5102E-06 1.7722 0.00063244 356.8754785640971 32.385 0.28542 28.529 28.366 28.652 -3.8562 29 16 2 0 0 0 0.047194 1 18457 18457 46.022 33.848 1 10399000 30292 6133 19826 20232 36017 36017 1093 0.07380430782109215 KYTAVVKMI 9 Oxidation (M) _KYTAVVKM(Oxidation (M))I_ 0 0 1 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN;ENST00000460089.1_1_10:7803378-7811304:-|nuORF ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.809728 1067.6049 -0.28561 -0.00015275 0.25545 0.00013662 -0.03016 -1.613E-05 534.8096650374317 28.913 0.14276 28.913 28.82 28.963 0 0.17952 0.00039444 NaN 117.76 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 787940 30293 6133 19826 20232 1093 0.07380430782109215 KYTAVVKMI 9 Unmodified _KYTAVVKMI_ 0 0 0 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN;ENST00000460089.1_1_10:7803378-7811304:-|nuORF ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5447082519531 3 351.543939 1051.60999 1.4366 0.00050502 -0.42425 -0.00014914 1.0123 0.00035588 351.54400787701235 45.666 0.30699 40.711 40.541 40.848 -4.9549 46 20 3 0 0 0 0.020973 1 28094 28094 49.527 36.655 1 9376100 30294 6133 19826 20233 36018 36018 0.08624734644718046 KYTCSPEFDF 10 Unmodified _KYTCSPEFDF_ 0 0 0 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.765869140625 2 618.765714 1235.51688 -0.39362 -0.00024356 0.28515 0.00017644 -0.10846 -6.7114E-05 618.7660502131305 77.279 0.39864 76.797 76.537 76.935 -0.4826 43 17 3 0 0 0 0.66569 1 42215 42215 6.7232 0 1 1292900 30295 16643 19827 20234 36019 36019 -0.09146234599165837 KYTEGVQSL 9 Unmodified _KYTEGVQSL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7689819335938 2 512.769114 1023.52368 0.053689 2.753E-05 0.15596 7.9971E-05 0.20965 0.0001075 512.769159366001 31.089 0.28074 31.089 30.953 31.234 0 43 13 4 0 0 0 0.0019086 1 16145 16145 133.05 61.13 1 32324000 30296 1611;14989 19828 20235 36020 36020 0.01285446343717922 KYTEGVQSL 9 Unmodified _KYTEGVQSL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7686767578125 2 512.769114 1023.52368 NaN NaN NaN NaN NaN NaN NaN 30.928 1 30.958 30.458 31.458 0.030106 0 0 0 0.79771 1 16185 16185 6.2058 0 1 30297 1611;14989 19828 20235 36021 36021 0.01285446343717922 KYTEGVQSL 9 Unmodified _KYTEGVQSL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7702026367188 2 512.769114 1023.52368 0.54842 0.00028121 -1.2748 -0.00065367 -0.72637 -0.00037246 512.7684401553536 35.297 0.63204 31.201 31.007 31.639 -4.0951 110 38 4 0 0 0 0.0074582 2 20375 20375;20499 110.55 48.261 1 94777000 30298 1611;14989 19828 20235 36022;36023 36022 0.01285446343717922 KYTEITATYF 10 Unmodified _KYTEITATYF_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8121948242188 2 618.810979 1235.6074 1.0351 0.00064052 0.39734 0.00024588 1.4324 0.00088639 618.8112413277058 54.653 0.25706 54.653 54.484 54.741 0 24 10 4 0 0 0 0.095786 1 30340 30340 47.594 29.459 1 1630900 30299 6893 19829 20236 36024 36024 -0.0009744227925239102 KYTEITATYF 10 Unmodified _KYTEITATYF_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8116455078125 2 618.810979 1235.6074 0.3925 0.00024288 0.97361 0.00060248 1.3661 0.00084537 618.811585325366 55.208 0.27394 54.73 54.588 54.861 -0.47798 38 12 4 0 0 0 0.021614 1 29917 29917 74.2 45.118 1 7902700 30300 6893 19829 20236 36025 36025 -0.0009744227925239102 KYTEITATYF 10 Unmodified _KYTEITATYF_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8123168945312 2 618.810979 1235.6074 0.90319 0.0005589 -0.43549 -0.00026948 0.4677 0.00028942 618.8108155887497 61.097 0.35462 54.949 54.762 55.116 -6.1478 33 18 2 0 0 0 0.021614 2 39267 39267;39407 74.2 45.705 1 34712000 30301 6893 19829 20236 36026;36027 36026 -0.0009744227925239102 KYTEKLEEI 9 Unmodified _KYTEKLEEI_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8764953613281 3 384.876411 1151.6074 0.13749 5.2918E-05 0.63665 0.00024503 0.77415 0.00029795 384.8763763019177 31.425 0.30435 31.425 31.276 31.58 0 63 14 6 0 0 0 0.032796 2 16326 16326;16430 42.312 21.732 1 46270000 30302 2430 19830 20237 36028;36029 36028 0.037665577207462775 KYTEKLEEI 9 Unmodified _KYTEKLEEI_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.8117065429688 2 576.810979 1151.6074 NaN NaN NaN NaN NaN NaN NaN 31.354 1 31.354 30.854 31.854 0 0 0 0 0.013617 1 16327 16327 121.35 45.585 1 30303 2430 19830 20237 36030 36030 0.037665577207462775 KYTEKLEEI 9 Unmodified _KYTEKLEEI_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8755798339844 3 384.876411 1151.6074 1.0407 0.00040054 -0.010096 -3.8859E-06 1.0306 0.00039665 384.8764242119239 35.32 0.63204 31.225 31.007 31.639 -4.0951 128 38 5 0 0 0 0.025842 1 20387 20387 46.022 13.985 1 171770000 30304 2430 19830 20237 36031 36031 0.037665577207462775 KYTEKLEEI 9 Unmodified _KYTEKLEEI_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.811279296875 2 576.810979 1151.6074 0.67274 0.00038804 -0.70142 -0.00040459 -0.028683 -1.6545E-05 576.8106987840287 35.325 0.41054 31.23 31.023 31.434 -4.0951 107 24 5 0 0 0 1.5508E-06 2 20512 20389;20512 160.69 57.336 1 148080000 30305 2430 19830 20237 36032;36033 36033 0.037665577207462775 KYTFPAEHRF 10 Unmodified _KYTFPAEHRF_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8887329101562 3 432.555895 1294.64586 0.016641 7.1981E-06 -2.9377 -0.0012707 -2.921 -0.0012635 432.55616033388736 31.838 1.1041 31.709 31.354 32.459 -0.12915 57 45 2 0 0 0 0.010233 1 16540 16540 68.484 40.25 1 48810000 30306 3413 19831 20238 36034 36034 0.010319081459101653 KYTFPAEHRF 10 Unmodified _KYTFPAEHRF_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.55517578125 3 432.555895 1294.64586 -0.10164 -4.3967E-05 -0.94729 -0.00040976 -1.0489 -0.00045372 432.55582080382607 31.747 0.40293 31.777 31.522 31.925 0.030106 61 18 5 0 0 0 0.0086576 4 16595 16571;16595;16608;16716 78.61 54.646 1 47068000 30307 3413 19831 20238 36035;36036;36037;36038 36036 0.010319081459101653 KYTFPAEHRF 10 Unmodified _KYTFPAEHRF_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5562438964844 3 432.555895 1294.64586 0.82944 0.00035878 1.1209 0.00048484 1.9503 0.00084362 432.5558337569505 35.278 0.48467 31.183 30.882 31.367 -4.0951 111 28 5 0 0 0 0.0055438 3 20429 20304;20429;20557 76.416 61.459 1 336010000 30308 3413 19831 20238 36039;36040;36041 36040 0.010319081459101653 KYTFPAEHRF 10 Unmodified _KYTFPAEHRF_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8347778320312 2 648.330205 1294.64586 0.64466 0.00041795 3.8092 0.0024696 4.4539 0.0028876 648.8347523223089 35.255 0.25135 31.159 31.023 31.274 -4.0951 32 14 3 0 0 0 4.0036E-05 1 20410 20410 121.35 47.146 1 18862000 30309 3413 19831 20238 36042 36042 0.010319081459101653 KYTGPPSW 8 Unmodified _KYTGPPSW_ 0 0 0 REV__ENSG00000143195|ENST00000271417|ILDR2 REV__ENSG00000143195|ENST00000271417|ILDR2 MSMS AL20221201_MKP_PDAC_01 4 468.2326354980469 2 468.23471 934.454868 NaN NaN NaN NaN NaN NaN NaN 76.726 1 70.55 70.05 71.05 -6.1757 0 0 0 0.92941 1 50185 50185 14.838 1.3304 1 + 30310 20612 19832 20239 36043 36043 -0.014981731653392671 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.306884765625 2 588.308406 1174.60226 0.4028 0.00023697 0.64757 0.00038097 1.0504 0.00061794 588.8104404546468 46.557 0.26255 46.557 46.436 46.698 0 22 11 3 0 0 0 0.069655 1 25423 25423 40.239 25.401 1 2541500 30311 492 19833 20240 36044 36044 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3086547851562 2 588.308406 1174.60226 0.57111 0.00033599 -0.16166 -9.5104E-05 0.40945 0.00024088 588.3082760930398 46.769 0.37381 46.433 46.25 46.624 -0.33664 66 18 5 0 0 0 2.1581E-06 2 24995 24995;25095 158.08 94.116 1 84507000 30312 492 19833 20240 36045;36046 36045 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5414123535156 3 392.541363 1174.60226 0.63537 0.00024941 0.064899 2.5475E-05 0.70027 0.00027489 392.54139643573006 46.787 0.33367 46.45 46.27 46.604 -0.33664 53 16 4 0 0 0 0.094149 1 25006 25006 32.037 12.412 1 64868000 30313 492 19833 20240 36047 36047 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5417785644531 3 392.541363 1174.60226 1.0227 0.00040143 -0.010922 -4.2875E-06 1.0117 0.00039715 392.54130806417464 46.551 0.38931 46.518 46.286 46.675 -0.033417 68 18 5 0 0 0 0.20428 1 24982 24982 21.59 9.4154 1 73644000 30314 492 19833 20240 36048 36048 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3089599609375 2 588.308406 1174.60226 1.2481 0.00073428 -0.32432 -0.0001908 0.9238 0.00054348 588.3081761051998 46.551 0.36796 46.517 46.307 46.675 -0.033421 64 17 5 0 0 0 2.0272E-05 1 25074 25074 154.75 92.18 1 88894000 30315 492 19833 20240 36049 36049 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3094482421875 2 588.308406 1174.60226 0.42847 0.00025207 0.26623 0.00015662 0.6947 0.0004087 588.3083970938119 51.727 0.44205 46.011 45.796 46.238 -5.7162 75 28 4 0 0 0 8.280499999999999E-21 2 32459 32459;32588 195.04 122.07 1 240850000 30316 492 19833 20240 36050;36051 36050 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5418090820312 3 392.541363 1174.60226 0.77471 0.00030411 0.14327 5.6238E-05 0.91798 0.00036034 392.54136690734174 51.735 0.36951 46 45.796 46.166 -5.7345 58 23 3 0 0 0 0.07087 2 32513 32513;32646 37.075 9.6438 1 107360000 30317 492 19833 20240 36052;36053 36052 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3082885742188 2 588.308406 1174.60226 0.79347 0.0004668 -0.82734 -0.00048673 -0.033874 -1.9929E-05 588.3082228746662 74.917 3.0418 68.741 67.369 70.411 -6.1757 308 162 3 0 0 0 4.4108E-38 16 48780 48158;48298;48423;48537;48654;48780;48903;49037;49164;49291;49412;49537;49667;49799;49911;50037 222.22 118.86 1 40209000 30318 492 19833 20240 36054;36055;36056;36057;36058;36059;36060;36061;36062;36063;36064;36065;36066;36067;36068;36069 36059 0.02194298648782933 KYTKIFNDF 9 Unmodified _KYTKIFNDF_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5422058105469 3 392.541363 1174.60226 1.1572 0.00045426 0.1453 5.7034E-05 1.3025 0.00051129 392.5414104259968 74.995 2.2563 68.819 67.747 70.004 -6.1757 255 120 3 0 0 0 0.05447 4 49218 48564;48679;49218;49738 47.594 23.793 1 24641000 30319 492 19833 20240 36070;36071;36072;36073 36072 0.02194298648782933 KYTKNIVSW 9 Unmodified _KYTKNIVSW_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.21337890625 3 380.213358 1137.61824 -0.11231 -4.2702E-05 0.76186 0.00028967 0.64955 0.00024697 380.21367484141376 37.516 0.19792 37.533 37.416 37.614 0.01704 18 9 2 0 0 0 0.091924 1 19889 19889 27.088 8.3671 1 4524600 30320 4994 19834 20241 36074 36074 0.05494004885690629 KYTKNIVSW 9 Unmodified _KYTKNIVSW_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8167114257812 2 569.816399 1137.61824 -0.042565 -2.4254E-05 0.056236 3.2044E-05 0.01367 7.7896E-06 569.8166116663662 37.545 0.21998 37.562 37.394 37.614 0.01704 24 10 3 0 0 0 0.0089732 1 19900 19900 86.332 32.499 1 4156100 30321 4994 19834 20241 36075 36075 0.05494004885690629 KYTKNIVSW 9 Unmodified _KYTKNIVSW_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2133483886719 3 380.213358 1137.61824 0.70445 0.00026784 0.79891 0.00030376 1.5034 0.0005716 380.21356797043694 41.462 0.37473 36.854 36.655 37.03 -4.6079 43 24 2 0 0 0 0.05483 1 24855 24855 40.725 21.363 1 33568000 30322 4994 19834 20241 36076 36076 0.05494004885690629 KYTKNIVSW 9 Unmodified _KYTKNIVSW_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;nc|ENSG00000137962|Q52LW3-2|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3189697265625 2 569.816399 1137.61824 0.35722 0.00020355 0.3353 0.00019106 0.69251 0.00039461 569.8163498778357 41.487 0.36018 36.879 36.686 37.047 -4.6079 40 23 2 0 0 0 0.0020017 2 24942 24874;24942 132.38 69.807 1 24374000 30323 4994 19834 20241 36077;36078 36078 0.05494004885690629 KYTKVASI 8 Unmodified _KYTKVASI_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MSMS AL20221201_MKP_PDAC_01 4 455.2742614746094 2 455.273835 908.533118 NaN NaN NaN NaN NaN NaN NaN 23.727 1 20.899 20.399 21.399 -2.8273 0 0 0 0.32009 1 12858 12858 61.602 2.9231 1 30324 1161 19835 20242 36079 36079 0.07519259419893842 KYTLGFVVI 9 Unmodified _KYTLGFVVI_ 0 0 0 ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1;nc|ENSG00000168216|Q9NUN5-3|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3140869140625 2 520.312961 1038.61137 1.3291 0.00069153 1.3048 0.00067892 2.6339 0.0013704 520.3134228250833 81.374 0.27206 81.434 81.287 81.559 0.059929 22 9 3 0 0 0 0.091924 1 44995 44995 34.932 4.7073 1 3819200 30325 7730 19836 20243 36080 36080 0.09360692005134297 KYTLKLTFI 9 Unmodified _KYTLKLTFI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.84765625 2 563.847167 1125.67978 1.2697 0.0007159 -0.093443 -5.2688E-05 1.1762 0.00066321 563.8465890898839 65.9 0.26463 65.91 65.768 66.033 0.0095596 19 12 2 0 0 0 0.0073703 1 36124 36124 110.79 50.719 1 6946500 30326 3366 19837 20244 36081 36081 0.12196936584973628 KYTLKLTFI 9 Unmodified _KYTLKLTFI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2340087890625 3 376.23387 1125.67978 0.872 0.00032808 -0.51195 -0.00019261 0.36005 0.00013546 376.2336586746593 65.902 0.29571 65.912 65.768 66.064 0.0095596 27 14 3 0 0 0 0.15471 1 36137 36137 20.581 15.684 1 3715400 30327 3366 19837 20244 36082 36082 0.12196936584973628 KYTLKLTFI 9 Unmodified _KYTLKLTFI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2348022460938 3 376.23387 1125.67978 1.7566 0.00066088 -0.23594 -8.8769E-05 1.5206 0.00057211 376.23365144075126 94.229 0.32431 88.054 87.88 88.204 -6.1757 44 18 3 0 0 0 0.2546 1 62369 62369 18.721 13.674 1 21085000 30328 3366 19837 20244 36083 36083 0.12196936584973628 KYTMMKTHL 9 Unmodified _KYTMMKTHL_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8685302734375 3 384.868317 1151.58312 0.90623 0.00034878 -0.18803 -7.2367E-05 0.7182 0.00027641 384.86831050907034 28.102 0.52155 24.953 24.639 25.16 -3.1482 39 27 2 0 0 0 0.085319 1 15683 15683 40.725 21.363 1 30144000 30329 4555 19838 20245 36084 36084 0.013393027618803899 KYTNNEAYF 9 Unmodified _KYTNNEAYF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2;nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000185009|ENST00000355264|AP3M1 ENSG00000070718|ENST00000396926|AP3M2;ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7633666992188 2 575.264196 1148.51384 -0.024007 -1.381E-05 -1.4159 -0.00081453 -1.4399 -0.00082834 575.2635244904636 35.33 0.25194 35.33 35.19 35.442 0 21 12 2 0 0 0 0.025842 1 18649 18649 57.722 35.975 1 8257900 30330 9317;1034 19839 20246 36085 36085 -0.0544774166166917 KYTNNEAYF 9 Unmodified _KYTNNEAYF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2;nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000185009|ENST00000355264|AP3M1 ENSG00000070718|ENST00000396926|AP3M2;ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2640380859375 2 575.264196 1148.51384 0.88497 0.00050909 -0.27834 -0.00016012 0.60662 0.00034897 575.2641445767721 39.503 0.31664 35.052 34.858 35.175 -4.4509 28 18 2 0 0 0 0.011671 1 23450 23450 75.761 40.829 1 11662000 30331 9317;1034 19839 20246 36086 36086 -0.0544774166166917 KYTNWKAFL 9 Unmodified _KYTNWKAFL_ 0 0 0 nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1 nc|ENSG00000011258|Q05BQ5-3|MBTD1 nc|ENSG00000011258|Q05BQ5-3|MBTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8195190429688 2 585.818941 1169.62333 0.92055 0.00053928 1.454 0.0008518 2.3746 0.0013911 585.8193037526997 88.759 0.19189 82.584 82.477 82.669 -6.1757 16 10 2 0 0 0 0.0099157 1 58609 58609 80.676 28.408 1 5819600 30332 439 19840 20247 36087 36087 0.04530308748326206 KYTPGFNIA 9 Unmodified _KYTPGFNIA_ 0 0 0 REV__nc|ENSG00000078269|O15056-3|SYNJ2 REV__nc|ENSG00000078269|O15056-3|SYNJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7699890136719 2 505.768917 1009.52328 1.258 0.00063627 -0.2053 -0.00010384 1.0527 0.00053243 505.768768814526 46.55 0.30976 46.517 46.307 46.617 -0.033417 43 14 4 0 0 0 0.03568 2 24987 24987;25089 52.268 36.127 1 19194000 + 30333 17624 19841 20248 36088;36089 36088 0.018900714145161146 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8660888671875 3 363.866181 1088.57671 -0.59715 -0.00021728 0.28219 0.00010268 -0.31495 -0.0001146 363.86625659884976 16.558 0.5441 16.558 16.373 16.917 0 483 138 5 0 0 0 0.013472 3 8103 8003;8103;8203 53.833 22.564 1 48749000 30334 7787 19842 20249 36090;36091;36092 36091 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8663024902344 3 363.866181 1088.57671 -0.57426 -0.00020895 0.56818 0.00020674 -0.0060841 -2.2138E-06 363.8663424864701 17.032 0.49932 17.033 16.943 17.442 0.0010548 431 142 5 0 0 0 0.023164 3 8508 8404;8508;8606 53.833 28.842 1 69424000 30335 7787 19842 20249 36093;36094;36095 36094 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2962036132812 2 545.295633 1088.57671 -0.76458 -0.00041692 0.33914 0.00018493 -0.42544 -0.00023199 545.2958813892101 17.047 0.14273 17.048 16.98 17.123 0.0010548 71 40 2 0 0 0 0.070838 1 8433 8433 39.957 23.015 1 1158700 30336 7787 19842 20249 36096 36096 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8662414550781 3 363.866181 1088.57671 -0.019632 -7.1435E-06 0.58157 0.00021161 0.56194 0.00020447 363.8663710037542 16.739 0.45847 16.744 16.608 17.067 0.0050545 107 39 3 0 0 0 0.038285 3 8458 8361;8458;8558 38.176 22.635 1 24002000 30337 7787 19842 20249 36097;36098;36099 36098 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2952880859375 2 545.295633 1088.57671 0.055499 3.0263E-05 -0.065436 -3.5682E-05 -0.0099372 -5.4187E-06 545.2957615639968 16.737 0.19839 16.742 16.659 16.858 0.0050564 13 12 2 0 0 0 0.37804 1 8399 8399 13.508 8.7519 1 448920 30338 7787 19842 20249 36100 36100 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2957153320312 2 545.295633 1088.57671 0.35391 0.00019299 -0.61831 -0.00033716 -0.26439 -0.00014417 545.2952635979035 17.496 0.44192 14.909 14.728 15.17 -2.5866 207 80 3 0 0 0 0.0036753 3 9276 9060;9165;9276 123.1 68.323 1 39312000 30339 7787 19842 20249 36101;36102;36103 36103 0.03596868917043139 KYTPPPHHI 9 Unmodified _KYTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.866181 1088.57671 -0.013948 -5.0752E-06 -0.70526 -0.00025662 -0.7192 -0.00026169 363.8660907662433 17.093 0.076376 17.098 17.055 17.132 0.0050564 0.032499 -0.0013482 NaN 53.833 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 337760 30340 7787 19842 20249 0.03596868917043139 KYTRFKRL 8 Unmodified _KYTRFKRL_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.2299194335938 3 371.229342 1110.6662 0.73899 0.00027434 0.47233 0.00017534 1.2113 0.00044968 371.22953718825613 14.915 0.28666 12.387 12.265 12.552 -2.5273 118 49 3 0 0 0 0.80799 1 7667 7667 1.8442 0.19162 1 7080600 + 30341 23054 19843 20250 36104 36104 0.1152912359639231 KYTRLQSD 8 Unmodified _KYTRLQSD_ 0 0 0 ENST00000517480.1_1_5:159849319-159849478:+|nuORF ENST00000517480.1_1_5:159849319-159849478:+|nuORF ENST00000517480.1_1_5:159849319-159849478:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.7204284667969 2 505.766906 1009.51926 NaN NaN NaN NaN NaN NaN NaN 74.919 1 68.743 68.243 69.243 -6.1757 0 0 0 0.6528 1 48986 48986 30.637 1.555 1 30342 14675 19844 20251 36105 36105 0.014879819208090339 KYTRRDDKI 9 Unmodified _KYTRRDDKI_ 0 0 0 ENSG00000143556|ENST00000368723|S100A7 ENSG00000143556|ENST00000368723|S100A7 ENSG00000143556|ENST00000368723|S100A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8335571289062 2 597.833111 1193.65167 NaN NaN NaN NaN NaN NaN NaN 45.564 1 45.536 45.036 46.036 -0.028011 0 0 0 0.6306 1 24483 24483 11.64 0.81637 1 30343 5527 19845 20252 36106 36106 0.06259006657614918 KYTSTPRHI 9 Unmodified _KYTSTPRHI_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.8892822265625 3 368.204974 1101.59309 0.81339 0.00029949 3.8948 0.0014341 4.7081 0.0017336 368.2052575635362 26.19 0.38052 23.239 23.078 23.459 -2.9511 47 21 3 0 0 0 0.21572 1 14385 14385 4.5289 2.2461 1 12879000 30344 5525 19846 20253 36107 36107 0.046359500831158584 KYTTLIAKL 9 Unmodified _KYTTLIAKL_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8314208984375 2 525.831517 1049.64848 1.0157 0.00053411 -0.82605 -0.00043436 0.18969 9.9745E-05 525.8307696448511 47.058 0.32628 47.025 46.856 47.182 -0.033417 38 16 3 0 0 0 0.0038962 2 25301 25301;25404 143.91 68.98 1 53487000 30345 4684 19847 20254 36108;36109 36108 0.12564363550905 KYTTLIAKL 9 Unmodified _KYTTLIAKL_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES;ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8321533203125 2 525.831517 1049.64848 0.45257 0.00023798 -0.21954 -0.00011544 0.23303 0.00012253 525.8313460274053 51.848 0.29707 46.114 45.967 46.264 -5.7345 33 19 2 0 0 0 0.030186 1 32680 32680 67.838 35.052 1 82038000 30346 4684 19847 20254 36110 36110 0.12564363550905 KYTTLREH 8 Unmodified _KYTTLREH_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2832641601562 2 524.282723 1046.55089 0.061516 3.2252E-05 0.24816 0.0001301 0.30967 0.00016236 524.2827818410028 20.283 0.181 20.293 20.189 20.37 0.010553 25 10 3 0 0 0 0.66338 1 10311 10311 20.454 0 1 3330200 + 30347 23192 19848 20255 36111 36111 0.02947974674748366 KYTTLREH 8 Unmodified _KYTTLREH_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2835693359375 2 524.282723 1046.55089 0.19743 0.00010351 -0.32113 -0.00016836 -0.1237 -6.4852E-05 524.2825327623038 23.197 0.60108 20.418 20.117 20.718 -2.7784 150 46 4 0 0 0 0.38465 1 12411 12411 46.021 3.9264 1 362350000 + 30348 23192 19848 20255 36112 36112 0.02947974674748366 KYTTPNFIPP 10 Unmodified _KYTTPNFIPP_ 0 0 0 REV__ENST00000562836.5_1_16:68797408-68867399:+|nuORF REV__ENST00000562836.5_1_16:68797408-68867399:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 393.2140197753906 3 393.213246 1176.61791 NaN NaN NaN NaN NaN NaN NaN 17.415 1 14.828 14.328 15.328 -2.5866 0 0 0 0.64375 1 9103 9103 12.175 5.1377 1 + 30349 17183 19849 20256 36113 36113 0.03666585165842662 KYVAEFLEW 9 Unmodified _KYVAEFLEW_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8026733398438 2 592.802957 1183.59136 -0.60093 -0.00035623 -0.10956 -6.4946E-05 -0.71048 -0.00042118 592.8025610770595 77.501 0.4314 77.019 76.784 77.215 -0.4826 40 20 3 0 0 0 0.036857 1 42444 42444 51.63 31.215 1 5145700 30350 10141 19850 20257 36114 36114 0.00690896274500119 KYVAEFLEW 9 Unmodified _KYVAEFLEW_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8050537109375 2 592.802957 1183.59136 1.0279 0.00060932 1.2022 0.00071265 2.23 0.001322 592.8036395532642 96.791 0.47295 90.616 90.354 90.827 -6.1757 69 27 4 0 0 0 0.023481 2 64113 64113;64237 60.074 23.947 1 70551000 30351 10141 19850 20257 36115;36116 36115 0.00690896274500119 KYVDIFCLL 9 Carbamidomethyl (C) _KYVDIFC(Carbamidomethyl (C))LL_ KYVDIFC(1)LL KYVDIFC(46)LL 0 1 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.814453125 2 585.81501 1169.61547 0.75311 0.00044119 -0.71461 -0.00041863 0.038504 2.2557E-05 585.8146371932485 100.5 0.22946 94.321 94.215 94.445 -6.1757 32 14 3 0 0 0 0.047788 1 67212 67212 45.7 7.7256 1 121240000 30352 10367 19851 20258 36117 36117 934 0.03744413436538707 KYVDKLEKI 9 Unmodified _KYVDKLEKI_ 0 0 0 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5 ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2282104492188 3 379.228897 1134.66486 -0.77738 -0.00029481 0.60614 0.00022986 -0.17124 -6.494E-05 379.2290976057686 28.122 0.20996 28.122 28.021 28.231 0 30 12 4 0 0 0 0.036608 1 14505 14505 51.765 10.418 1 6045600 30353 2810 19852 20259 36118 36118 0.10291444716995102 KYVDKLEKI 9 Unmodified _KYVDKLEKI_ 0 0 0 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5 ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.56396484375 3 379.228897 1134.66486 1.0921 0.00041415 -0.044184 -1.6756E-05 1.0479 0.0003974 379.22884802831726 31.783 0.28063 28.087 27.966 28.246 -3.6958 33 15 3 0 0 0 0.0020238 2 18003 18003;18026 132.22 44.881 1 33408000 30354 2810 19852 20259 36119;36120 36119 0.10291444716995102 KYVDKRLEQL 10 Unmodified _KYVDKRLEQL_ 0 0 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.2491760253906 3 431.250472 1290.72959 -0.66939 -0.00028868 0.29647 0.00012785 -0.37293 -0.00016083 431.25044219696764 28.121 0.19629 28.121 28.034 28.231 0 34 11 4 0 0 0 0.47059 1 14492 14492 17.863 7.8469 1 14175000 30355 4035 19853 20260 36121 36121 0.09585019522978655 KYVDKRLEQL 10 Unmodified _KYVDKRLEQL_ 0 0 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2512817382812 3 431.250472 1290.72959 0.7215 0.00031115 0.10261 4.4249E-05 0.82411 0.0003554 431.25072358660947 31.499 0.32467 27.803 27.622 27.947 -3.6958 31 16 3 0 0 0 0.093652 1 17788 17788 48.073 25.298 1 52801000 30356 4035 19853 20260 36122 36122 0.09585019522978655 KYVDKRLEQL 10 Unmodified _KYVDKRLEQL_ 0 0 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 431.250472 1290.72959 0.33713 0.00014539 1.0014 0.00043185 1.3385 0.00057724 431.2505461785154 27.897 0.1725 27.926 27.84 28.012 0.029564 -0.023854 0.00086825 NaN 48.073 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1642500 30357 4035 19853 20260 0.09585019522978655 KYVDLTVSF 9 Unmodified _KYVDLTVSF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2900390625 2 536.289682 1070.56481 0.54576 0.00029269 0.41177 0.00022083 0.95754 0.00051352 536.2896259327898 64.151 0.32964 63.665 63.492 63.821 -0.48512 32 15 3 0 0 0 0.10247 1 35014 35014 32.786 2.1491 1 1842800 30358 601 19854 20261 36123 36123 0.0323520738318166 KYVDLTVSF 9 Unmodified _KYVDLTVSF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2891845703125 2 536.289682 1070.56481 0.78725 0.00042219 0.045432 2.4365E-05 0.83268 0.00044656 536.2897328775232 63.666 0.3548 63.656 63.49 63.845 -0.010532 41 16 3 0 0 0 0.011671 1 34836 34836 75.761 20.987 1 7357500 30359 601 19854 20261 36124 36124 0.0323520738318166 KYVDLTVSF 9 Unmodified _KYVDLTVSF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2903442382812 2 536.289682 1070.56481 0.90009 0.00048271 0.97598 0.00052341 1.8761 0.0010061 536.2901181207797 74.704 1.2869 68.528 67.997 69.284 -6.1757 113 68 2 0 0 0 0.011671 5 48672 48672;48797;48922;49048;49169 75.761 19.584 1 24771000 30360 601 19854 20261 36125;36126;36127;36128;36129 36125 0.0323520738318166 KYVEKLEAL 9 Unmodified _KYVEKLEAL_ 0 0 0 ENSG00000143363|ENST00000271620|PRUNE1;nc|ENSG00000143363|Q86TP1-3|PRUNE1;nc|ENSG00000143363|Q86TP1-2|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1 ENSG00000143363|ENST00000271620|PRUNE1;nc|ENSG00000143363|Q86TP1-4|PRUNE1 ENSG00000143363|ENST00000271620|PRUNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8187866210938 2 546.818607 1091.62266 0.37422 0.00020463 3.3024 0.0018058 3.6766 0.0020104 546.8206877133059 37.141 0.35856 37.141 36.958 37.316 0 39 17 3 0 0 0 0.19349 1 19733 19733 24.991 3.454 1 2971500 30361 5497;16243 19855 20262 36130 36130 0.08051469308611559 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7979736328125 2 541.797675 1081.5808 0.18659 0.0001011 0.53816 0.00029157 0.72476 0.00039267 541.797944868475 62.677 0.35945 62.677 62.486 62.846 0 44 15 4 0 0 0 0.028475 1 34933 34933 56.177 20.05 1 12574000 30362 3366 19856 20263 36131 36131 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7969360351562 2 541.797675 1081.5808 0.24637 0.00013348 0.083519 4.5251E-05 0.32989 0.00017873 541.7977531615601 63.068 0.51485 62.581 62.326 62.841 -0.48617 84 24 5 0 0 0 0.010611 2 34308 34308;34409 78.728 30.979 1 118490000 30363 3366 19856 20263 36132;36133 36132 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7973022460938 2 541.797675 1081.5808 0.30466 0.00016507 -0.59089 -0.00032014 -0.28622 -0.00015508 541.7974144256641 62.668 0.35833 62.646 62.433 62.791 -0.021614 47 18 3 0 0 0 0.020973 2 34212 34212;34324 62.573 22.623 1 22742000 30364 3366 19856 20263 36134;36135 36134 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7977905273438 2 541.797675 1081.5808 0.57383 0.0003109 -0.27045 -0.00014653 0.30338 0.00016437 541.7977026133477 68.293 0.93741 62.117 61.737 62.675 -6.1757 136 54 3 0 0 0 0.014417 3 44505 44373;44505;44635 69.105 29.155 1 208900000 30365 3366 19856 20263 36136;36137;36138 36137 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7953491210938 2 541.797675 1081.5808 0.88431 0.00047912 -1.4714 -0.00079719 -0.58707 -0.00031807 541.7968770942385 72.049 0.59058 65.873 65.589 66.179 -6.1757 40 31 2 0 0 0 0.024882 1 47148 47148 58.679 9.0099 1 16707000 30366 3366 19856 20263 36139 36139 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.797607421875 2 541.797675 1081.5808 0.75991 0.00041172 -0.62141 -0.00033668 0.1385 7.504E-05 541.7974232048435 73.79 1.7766 67.614 66.678 68.454 -6.1757 147 89 2 0 0 0 0.032796 4 47982 47982;48318;48439;48583 53.833 15.657 1 21865000 30367 3366 19856 20263 36140;36141;36142;36143 36140 0.043269136200933644 KYVENFGLI 9 Unmodified _KYVENFGLI_ 0 0 0 ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF ENSG00000118363|ENST00000263672|SPCS2 ENSG00000118363|ENST00000263672|SPCS2 MSMS AL20221201_MKP_PDAC_01 4 541.7996826171875 2 541.797675 1081.5808 NaN NaN NaN NaN NaN NaN NaN 70.958 1 64.782 64.282 65.282 -6.1757 0 0 0 0.091025 1 46379 46379 45.7 5.7423 1 30368 3366 19856 20263 36144 36144 0.043269136200933644 KYVEQLLTL 9 Unmodified _KYVEQLLTL_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8253173828125 2 553.826432 1105.63831 0.71221 0.00039444 -0.31188 -0.00017273 0.40033 0.00022171 553.8261784530004 67.613 0.29276 67.131 66.939 67.232 -0.48218 18 12 2 0 0 0 0.18255 1 36947 36947 26.268 10.119 1 1712200 30369 7461 19857 20264 36145 36145 0.08971755825655237 KYVEQLLTLF 10 Unmodified _KYVEQLLTLF_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.3612670898438 2 627.360639 1252.70673 0.7681 0.00048187 0.13871 8.7019E-05 0.9068 0.00056889 627.3607929531921 90.583 0.27937 90.625 90.494 90.773 0.042175 17 9 2 0 0 0 0.0057332 1 50386 50386 96.367 48.618 1 8802800 30370 7461 19858 20265 36146 36146 0.09048000405505263 KYVEQLLTLF 10 Unmodified _KYVEQLLTLF_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3612060546875 2 627.360639 1252.70673 1.0146 0.00063649 0.27488 0.00017245 1.2894 0.00080894 627.3608106785575 100.26 0.16344 94.083 93.978 94.141 -6.1757 25 9 3 0 0 0 0.015688 1 66981 66981 79.596 41.421 1 26655000 30371 7461 19858 20265 36147 36147 0.09048000405505263 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5639953613281 3 407.564391 1219.67134 -0.61304 -0.00024985 -0.56641 -0.00023085 -1.1795 -0.0004807 407.56409964994515 29.803 0.22821 29.803 29.702 29.931 0 35 13 3 0 0 0 0.033587 1 15436 15436 49.742 19.038 1 24550000 30372 2138 19859 20266 36148 36148 0.07029382668383732 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5642700195312 3 407.564391 1219.67134 0.66886 0.0002726 -0.68228 -0.00027807 -0.013421 -5.4698E-06 407.56407346344156 29.791 0.29393 29.711 29.601 29.895 -0.080431 34 13 4 0 0 0 0.07087 1 15426 15426 30.703 9.1133 1 42241000 30373 2138 19859 20266 36149 36149 0.07029382668383732 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5637512207031 3 407.564391 1219.67134 -0.21616 -8.8099E-05 -0.087957 -3.5848E-05 -0.30412 -0.00012395 407.56424634493004 29.547 0.24153 29.577 29.451 29.693 0.030106 24 11 3 0 0 0 0.10247 1 15415 15415 24.882 8.3157 1 21431000 30374 2138 19859 20266 36150 36150 0.07029382668383732 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5646057128906 3 407.564391 1219.67134 1.0672 0.00043496 0.1274 5.1925E-05 1.1946 0.00048689 407.56444465411795 33.409 0.46798 29.423 29.192 29.66 -3.9853 84 26 4 0 0 0 0.017075 2 19064 19064;19182 69.338 38.635 1 233950000 30375 2138 19859 20266 36151;36152 36151 0.07029382668383732 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.3443603515625 2 610.842948 1219.67134 0.8886 0.0005428 -0.27181 -0.00016604 0.61679 0.00037676 610.8428004877768 33.388 0.27562 29.403 29.264 29.539 -3.9853 24 15 2 0 0 0 0.0088668 1 19101 19101 87.258 58.177 1 24886000 30376 2138 19859 20266 36153 36153 0.07029382668383732 KYVERIHYI 9 Unmodified _KYVERIHYI_ 0 0 0 nc|ENSG00000103415|P30519-2|HMOX2;ENSG00000103415|ENST00000570646|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 nc|ENSG00000103415|P30519-2|HMOX2 MSMS AL20221201_MKP_PDAC_01 4 610.8438110351562 2 610.842948 1219.67134 NaN NaN NaN NaN NaN NaN NaN 33.53 1 29.545 29.045 30.045 -3.9853 0 0 0 0.032269 1 19236 19236 65.474 40.483 1 30377 2138 19859 20266 36154 36154 0.07029382668383732 KYVESFRRF 9 Unmodified _KYVESFRRF_ 0 0 0 ENST00000467390.5_1_2:138722061-138759907:+|nuORF;ENST00000485653.1_1_2:138722082-138758488:+|nuORF;nc|ENSG00000150540|P50135-3|HNMT;nc|ENSG00000150540|P50135-2|HNMT;ENSG00000150540|ENST00000280097|HNMT ENST00000467390.5_1_2:138722061-138759907:+|nuORF ENST00000467390.5_1_2:138722061-138759907:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2247619628906 3 411.224257 1230.65094 -0.12964 -5.3311E-05 0.71704 0.00029486 0.5874 0.00024155 411.2245286328459 29.141 0.22005 29.171 29.079 29.299 0.030106 21 8 3 0 0 0 0.21643 1 15196 15196 15.739 7.7932 1 17104000 30378 13779 19860 20267 36155 36155 0.04484212008560462 KYVESFRRF 9 Unmodified _KYVESFRRF_ 0 0 0 ENST00000467390.5_1_2:138722061-138759907:+|nuORF;ENST00000485653.1_1_2:138722082-138758488:+|nuORF;nc|ENSG00000150540|P50135-3|HNMT;nc|ENSG00000150540|P50135-2|HNMT;ENSG00000150540|ENST00000280097|HNMT ENST00000467390.5_1_2:138722061-138759907:+|nuORF ENST00000467390.5_1_2:138722061-138759907:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2247009277344 3 411.224257 1230.65094 0.80572 0.00033133 0.25346 0.00010423 1.0592 0.00043556 411.2244311862217 32.764 0.34975 28.907 28.694 29.044 -3.8562 44 18 3 0 0 0 0.15471 1 18650 18650 26.021 10.282 1 34240000 30379 13779 19860 20267 36156 36156 0.04484212008560462 KYVGAVQML 9 Oxidation (M) _KYVGAVQM(Oxidation (M))L_ KYVGAVQM(1)L KYVGAVQM(52)L 0 0 1 nc|ENSG00000048471|Q8TEQ0-2|SNX29;ENSG00000048471|ENST00000566228|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 nc|ENSG00000048471|Q8TEQ0-2|SNX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7786865234375 2 512.778428 1023.5423 -0.53361 -0.00027362 0.67422 0.00034572 0.1406 7.2098E-05 512.7786687436244 35.594 0.20907 35.371 35.31 35.519 -0.2224 15 9 2 0 0 0 0.03568 1 18655 18655 52.268 25.385 1 3691300 30380 701 19861 20268 36157 36157 109 0.0314728471394119 KYVHLFPKL 9 Unmodified _KYVHLFPKL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2344360351562 3 382.234093 1143.68045 -0.14113 -5.3943E-05 0.31438 0.00012017 0.17325 6.6223E-05 382.23410353163945 44.705 0.40864 44.683 44.466 44.875 -0.022064 52 21 3 0 0 0 0.024189 2 23921 23921;24020 59.368 38.36 1 54684000 30381 5575 19862 20269 36158;36159 36158 0.11435776024700317 KYVHLFPKL 9 Unmodified _KYVHLFPKL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2345886230469 3 382.234093 1143.68045 1.2296 0.00047001 0.19241 7.3544E-05 1.4221 0.00054356 382.2341532620047 91.088 0.44147 84.913 84.723 85.165 -6.1757 90 25 5 0 0 0 0.011291 2 60256 60128;60256 76.825 44.787 1 260780000 30382 5575 19862 20269 36160;36161 36161 0.11435776024700317 KYVHLFPKL 9 Unmodified _KYVHLFPKL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8486938476562 2 572.847502 1143.68045 0.87073 0.00049879 0.1025 5.8718E-05 0.97323 0.00055751 572.847457598853 91.086 0.27268 84.911 84.787 85.059 -6.1757 32 15 3 0 0 0 0.0048194 1 60181 60181 107.19 69.011 1 20650000 30383 5575 19862 20269 36162 36162 0.11435776024700317 KYVKDFHKF 9 Unmodified _KYVKDFHKF_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5578308105469 3 404.557236 1210.64988 -0.10266 -4.153E-05 0.9579 0.00038753 0.85525 0.000346 404.5575206808551 19.916 0.16326 19.924 19.822 19.985 0.0078487 24 8 4 0 0 0 0.094905 1 10135 10135 34.222 22.704 1 5723000 30384 9755 19863 20270 36163 36163 0.05297997639627283 KYVKDFHKF 9 Unmodified _KYVKDFHKF_ 0 0 0 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 ENSG00000196081|ENST00000418100|ZNF724 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5578308105469 3 404.557236 1210.64988 0.5533 0.00022384 0.15466 6.2569E-05 0.70795 0.00028641 404.55719847731535 22.59 0.39851 19.812 19.594 19.993 -2.7784 76 26 4 0 0 0 0.037118 2 12112 12112;12222 51.488 26.497 1 37650000 30385 9755 19863 20270 36164;36165 36164 0.05297997639627283 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.3218383789062 2 587.318774 1172.623 0.28882 0.00016963 3.6279 0.0021308 3.9168 0.0023004 587.3214702662123 53.126 0.28679 52.674 52.496 52.783 -0.45173 34 12 3 0 0 0 0.015688 1 28717 28717 67.838 36.57 1 9812700 30386 314 19864 20271 36166 36166 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8824768066406 3 391.881608 1172.623 0.37572 0.00014724 -0.18569 -7.2768E-05 0.19003 7.4468E-05 391.88147964909166 53.162 0.22854 52.71 52.554 52.783 -0.45173 29 11 3 0 0 0 0.2143 1 28721 28721 26.268 20.076 1 6532300 30387 314 19864 20271 36167 36167 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3193359375 2 587.318774 1172.623 0.73318 0.00043061 0.20008 0.00011751 0.93326 0.00054812 587.3190514689 52.779 0.44033 52.715 52.583 53.024 -0.063423 62 21 5 0 0 0 0.01085 2 28671 28569;28671 78.06 57.607 1 62841000 30388 314 19864 20271 36168;36169 36169 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8829040527344 3 391.881608 1172.623 0.45472 0.0001782 0.082187 3.2208E-05 0.53691 0.0002104 391.88161617537935 52.803 0.31738 52.74 52.583 52.901 -0.063423 51 15 4 0 0 0 0.06187 2 28570 28570;28673 38.176 26.681 1 36765000 30389 314 19864 20271 36170;36171 36170 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.320068359375 2 587.318774 1172.623 1.336 0.00078468 0.57192 0.0003359 1.908 0.0011206 587.3191616409983 58.575 0.34982 52.5 52.299 52.649 -6.0745 38 19 3 0 0 0 0.029718 1 37493 37493 55.503 24.234 1 19270000 30390 314 19864 20271 36172 36172 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8827209472656 3 391.881608 1172.623 1.6842 0.00066 0.66641 0.00026116 2.3506 0.00092116 391.88180169046177 58.616 0.31879 52.541 52.299 52.618 -6.0745 29 17 2 0 0 0 0.10734 1 37519 37519 43.772 35.827 1 11446000 30391 314 19864 20271 36173 36173 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3187866210938 2 587.318774 1172.623 0.72854 0.00042789 -1.2718 -0.00074694 -0.54324 -0.00031905 587.3179598946901 84.022 1.0113 77.847 77.403 78.414 -6.1757 134 55 3 0 0 0 1.9878E-10 4 55399 55161;55277;55399;55521 173.69 133.74 1 49947000 30392 314 19864 20271 36174;36175;36176;36177 36176 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8819885253906 3 391.881608 1172.623 1.0731 0.00042052 0.11572 4.5348E-05 1.1888 0.00046587 391.8815734656055 84.126 0.88575 77.95 77.528 78.414 -6.1757 119 48 4 0 0 0 0.06187 3 55263 55263;55389;55522 45.7 34.9 1 36570000 30393 314 19864 20271 36178;36179;36180 36178 0.043588890284581794 KYVKIFDNF 9 Unmodified _KYVKIFDNF_ 0 0 0 nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 nc|ENSG00000005801|O14628-4|ZNF195 MSMS AL20221201_MKP_PDAC_01 4 587.31689453125 2 587.318774 1172.623 NaN NaN NaN NaN NaN NaN NaN 84.59 1 78.415 77.915 78.915 -6.1757 0 0 0 0.0083006 1 55661 55661 96.367 50.667 1 30394 314 19864 20271 36181 36181 0.043588890284581794 KYVKILYDF 9 Unmodified _KYVKILYDF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8372192382812 2 594.8368 1187.65905 -0.78934 -0.00046953 -0.015517 -9.2301E-06 -0.80486 -0.00047876 594.8369035364475 56.243 0.24805 55.757 55.634 55.882 -0.48554 32 12 3 0 0 0 0.013609 1 30512 30512 70.332 51.075 1 16072000 30395 8657 19865 20272 36182 36182 0.07272346205309077 KYVKILYDF 9 Unmodified _KYVKILYDF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8928833007812 3 396.893625 1187.65905 -0.86863 -0.00034475 0.39613 0.00015722 -0.47249 -0.00018753 396.89348242275423 56.272 0.19164 55.786 55.672 55.863 -0.48554 15 9 2 0 0 0 0.070838 1 30536 30536 36.506 30.723 1 3865300 30396 8657 19865 20272 36183 36183 0.07272346205309077 KYVKILYDF 9 Unmodified _KYVKILYDF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8360595703125 2 594.8368 1187.65905 -0.54363 -0.00032337 0.19458 0.00011575 -0.34905 -0.00020763 594.8368700674598 55.905 0.33342 55.836 55.666 56 -0.068737 57 17 4 0 0 0 0.0087923 2 30336 30336;30436 103.42 80.683 1 98672000 30397 8657 19865 20272 36184;36185 36184 0.07272346205309077 KYVKILYDF 9 Unmodified _KYVKILYDF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2283325195312 3 396.893625 1187.65905 -0.54777 -0.00021741 0.51504 0.00020441 -0.032736 -1.2993E-05 396.89384276210404 55.902 0.27601 55.833 55.705 55.981 -0.068737 38 14 3 0 0 0 0.16226 2 30351 30351;30459 19.362 14.646 1 24824000 30398 8657 19865 20272 36186;36187 36186 0.07272346205309077 KYVKILYDF 9 Unmodified _KYVKILYDF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8382568359375 2 594.8368 1187.65905 0.49018 0.00029158 0.30853 0.00018353 0.79871 0.0004751 594.8369732565424 90.159 0.66989 83.983 83.67 84.34 -6.1757 120 38 4 0 0 0 0.011291 2 59410 59410;59549 76.825 60.676 1 118950000 30399 8657 19865 20272 36188;36189 36188 0.07272346205309077 KYVKIVEKW 9 Unmodified _KYVKIVEKW_ 0 0 0 ENST00000495272.5_1_1:95705425-95712423:+|nuORF;ENSG00000122481|ENST00000370202|RWDD3;nc|ENSG00000122481|Q9Y3V2-3|RWDD3;nc|ENSG00000122481|Q9Y3V2-2|RWDD3;nc|ENSG00000122481|Q9Y3V2-4|RWDD3 ENST00000495272.5_1_1:95705425-95712423:+|nuORF ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2406616210938 3 398.241137 1191.70158 -0.37292 -0.00014851 0.25969 0.00010342 -0.11323 -4.5094E-05 398.24103269005803 31.946 0.19725 31.976 31.887 32.084 0.030106 20 8 3 0 0 0 0.21377 1 16757 16757 21.799 13.854 1 1909900 30400 3639 19866 20273 36190 36190 0.11339741333540587 KYVKIVEKW 9 Unmodified _KYVKIVEKW_ 0 0 0 ENST00000495272.5_1_1:95705425-95712423:+|nuORF;ENSG00000122481|ENST00000370202|RWDD3;nc|ENSG00000122481|Q9Y3V2-3|RWDD3;nc|ENSG00000122481|Q9Y3V2-2|RWDD3;nc|ENSG00000122481|Q9Y3V2-4|RWDD3 ENST00000495272.5_1_1:95705425-95712423:+|nuORF ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2414855957031 3 398.241137 1191.70158 1.3362 0.00053215 0.01531 6.0972E-06 1.3516 0.00053824 398.24095732847144 36.037 0.26786 31.845 31.694 31.962 -4.1928 35 16 3 0 0 0 0.058763 1 20992 20992 42.835 27.097 1 7560500 30401 3639 19866 20273 36191 36191 0.11339741333540587 KYVKVFDKF 9 Unmodified _KYVKVFDKF_ 0 0 0 nc|ENSG00000196247|Q9UII5|ZNF107;ENSG00000196247|ENST00000620827|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8942565917969 3 391.893737 1172.65938 -0.34237 -0.00013417 0.2879 0.00011283 -0.05447 -2.1346E-05 391.89381710844657 36.482 0.35701 36.503 36.349 36.706 0.021545 41 16 4 0 0 0 0.037253 1 19300 19300 48.073 26.483 1 26589000 30402 9788 19867 20274 36192 36192 0.07995765925170417 KYVKVFDKF 9 Unmodified _KYVKVFDKF_ 0 0 0 nc|ENSG00000196247|Q9UII5|ZNF107;ENSG00000196247|ENST00000620827|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8941650390625 3 391.893737 1172.65938 0.93229 0.00036536 0.32562 0.00012761 1.2579 0.00049297 391.89380647184345 41.16 0.36757 36.552 36.371 36.738 -4.6079 62 22 4 0 0 0 0.076472 2 24728 24714;24728 30.431 25.031 1 56003000 30403 9788 19867 20274 36193;36194 36194 0.07995765925170417 KYVKVFDKF 9 Unmodified _KYVKVFDKF_ 0 0 0 nc|ENSG00000196247|Q9UII5|ZNF107;ENSG00000196247|ENST00000620827|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8939819335938 3 391.893737 1172.65938 0.54082 0.00021194 0.7672 0.00030066 1.308 0.0005126 392.2284695667647 76.989 0.80295 70.813 70.489 71.292 -6.1757 89 44 3 0 0 0 0.062454 4 50342 50230;50342;50472;50604 39.213 31.268 1 26153000 30404 9788 19867 20274 36195;36196;36197;36198 36196 0.07995765925170417 KYVKVFHKF 9 Unmodified _KYVKVFHKF_ 0 0 0 ENSG00000172687|ENST00000683779|ZNF738;ENST00000594254.1_1_19:21565732-21566473:+|nuORF;ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000183850|ENST00000597761|ZNF730;ENSG00000268696|ENST00000600766|ZNF723;ENSG00000229676|ENST00000456783|ZNF492;ENSG00000197360|ENST00000357774|ZNF98;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000173041|ENST00000309683|ZNF680;nc|ENSG00000146757|Q03936-2|ZNF92;ENSG00000146757|ENST00000328747|ZNF92;nc|ENSG00000146757|Q03936-3|ZNF92 ENSG00000172687|ENST00000683779|ZNF738;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000173041|ENST00000309683|ZNF680;nc|ENSG00000146757|Q03936-2|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2364196777344 3 399.237726 1194.69135 -0.026594 -1.0617E-05 -1.0181 -0.00040646 -1.0447 -0.00041708 399.5722300425466 21.602 0.17665 21.616 21.56 21.737 0.013796 30 19 2 0 0 0 0.2324 1 11053 11053 20.415 12.259 1 4547200 30405 5793;8242;15802;8282 19868 20275 36199 36199 0.1017917839897109 KYVKVFHKF 9 Unmodified _KYVKVFHKF_ 0 0 0 ENSG00000172687|ENST00000683779|ZNF738;ENST00000594254.1_1_19:21565732-21566473:+|nuORF;ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000183850|ENST00000597761|ZNF730;ENSG00000268696|ENST00000600766|ZNF723;ENSG00000229676|ENST00000456783|ZNF492;ENSG00000197360|ENST00000357774|ZNF98;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000173041|ENST00000309683|ZNF680;nc|ENSG00000146757|Q03936-2|ZNF92;ENSG00000146757|ENST00000328747|ZNF92;nc|ENSG00000146757|Q03936-3|ZNF92 ENSG00000172687|ENST00000683779|ZNF738;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000173041|ENST00000309683|ZNF680;nc|ENSG00000146757|Q03936-2|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2374877929688 3 399.237726 1194.69135 -0.023599 -9.4216E-06 -0.026731 -1.0672E-05 -0.05033 -2.0094E-05 399.5721000237095 25.792 0.22383 22.841 22.68 22.904 -2.9511 21 13 2 0 0 0 0.11005 1 14114 14114 32.037 19.863 1 10880000 30406 5793;8242;15802;8282 19868 20275 36200 36200 0.1017917839897109 KYVKVFNKF 9 Unmodified _KYVKVFNKF_ 0 0 0 ENSG00000197372|ENST00000359788|ZNF675 ENSG00000197372|ENST00000359788|ZNF675 ENSG00000197372|ENST00000359788|ZNF675 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5656127929688 3 391.565732 1171.67537 -0.33121 -0.00012969 0.22522 8.8189E-05 -0.10599 -4.15E-05 391.565683473043 31.529 0.2353 31.559 31.457 31.692 0.030104 29 10 4 0 0 0 0.07916 1 16524 16524 41.956 36.659 1 10953000 30407 9945 19869 20276 36201 36201 0.09639472162075435 KYVKVFNKF 9 Unmodified _KYVKVFNKF_ 0 0 0 ENSG00000197372|ENST00000359788|ZNF675 ENSG00000197372|ENST00000359788|ZNF675 ENSG00000197372|ENST00000359788|ZNF675 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5664978027344 3 391.565732 1171.67537 1.3272 0.0005197 0.83831 0.00032826 2.1655 0.00084795 391.5657896727731 35.685 0.35779 31.492 31.351 31.709 -4.1928 50 22 3 0 0 0 0.10734 1 20699 20699 36.506 28.351 1 23961000 30408 9945 19869 20276 36202 36202 0.09639472162075435 KYVMDVEEI 9 Oxidation (M) _KYVM(Oxidation (M))DVEEI_ KYVM(1)DVEEI KYVM(60)DVEEI 0 0 1 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2763061523438 2 571.275915 1140.53728 NaN NaN NaN NaN NaN NaN NaN 38.238 1 38.238 37.738 38.738 0 0 0 0 0.044471 1 20409 20409 60.074 12.325 1 30409 7657 19870 20277 36203 36203 1306 -0.02737063939366635 KYVPAIAHL 9 Unmodified _KYVPAIAHL_ 0 0 0 ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.3030395507812 2 506.302927 1010.5913 -0.49921 -0.00025275 -0.1866 -9.4478E-05 -0.68582 -0.00034723 506.30282391783715 42.159 0.1997 41.852 41.72 41.92 -0.30682 21 9 3 0 0 0 0.0088154 1 22347 22347 106.85 59.925 1 19858000 30410 2396 19871 20278 36204 36204 0.08642941065158993 KYVPAIAHL 9 Unmodified _KYVPAIAHL_ 0 0 0 ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3032531738281 2 506.302927 1010.5913 -0.029623 -1.4998E-05 0.2691 0.00013625 0.23947 0.00012125 506.30337331034104 41.851 0.22493 41.842 41.736 41.961 -0.0088196 23 10 3 0 0 0 0.0081063 2 22428 22379;22428 93.883 55.732 1 13089000 30411 2396 19871 20278 36205;36206 36206 0.08642941065158993 KYVPAIAHL 9 Unmodified _KYVPAIAHL_ 0 0 0 ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3035278320312 2 506.302927 1010.5913 0.41904 0.00021216 0.49792 0.0002521 0.91696 0.00046426 506.30326472728916 46.417 0.35523 41.336 41.082 41.437 -5.0805 63 26 3 0 0 0 0.012158 1 28634 28634 74.396 44.171 1 123280000 30412 2396 19871 20278 36207 36207 0.08642941065158993 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1974487304688 3 378.197708 1131.57129 0.16059 6.0734E-05 0.1643 6.2137E-05 0.32489 0.00012287 378.1977273106637 43.074 0.253 42.763 42.61 42.863 -0.31039 30 11 3 0 0 0 0.0082475 1 22867 22867 75.571 52.834 1 13663000 30413 3817 19872 20279 36208 36208 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7928466796875 2 566.792924 1131.57129 0.32491 0.00018415 -0.2409 -0.00013654 0.08401 4.7616E-05 566.792755310444 43.061 0.2319 42.751 42.61 42.842 -0.31039 17 10 2 0 0 0 0.0082475 1 22878 22878 92.653 44.307 1 9879200 30414 3817 19872 20279 36209 36209 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.1978454589844 3 378.197708 1131.57129 0.53748 0.00020327 0.072474 2.741E-05 0.60996 0.00023068 378.1977533360697 42.744 0.23061 42.735 42.599 42.83 -0.0088196 21 10 3 0 0 0 0.0089732 1 22874 22874 70.929 53.816 1 8526600 30415 3817 19872 20279 36210 36210 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7935180664062 2 566.792924 1131.57129 0.7676 0.00043507 -0.1118 -6.3365E-05 0.65581 0.00037171 566.7930816256205 42.734 0.26893 42.725 42.581 42.85 -0.0088196 19 12 3 0 0 0 0.0087873 1 22886 22886 103.35 48.58 1 5465900 30416 3817 19872 20279 36211 36211 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.532470703125 3 378.197708 1131.57129 0.89535 0.00033862 0.16377 6.1938E-05 1.0591 0.00040055 378.19773452153385 46.65 0.25894 41.57 41.492 41.751 -5.0805 94 57 2 0 0 0 0.0089732 1 28844 28844 70.929 49.339 1 73461000 30417 3817 19872 20279 36212 36212 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7933959960938 2 566.792924 1131.57129 0.55134 0.0003125 -0.59328 -0.00033626 -0.041931 -2.3766E-05 566.7925800886107 46.653 0.22982 41.573 41.512 41.742 -5.0805 62 51 2 0 0 0 0.0014462 1 28935 28935 136.39 61.969 1 78165000 30418 3817 19872 20279 36213 36213 0.01077145334556917 KYVSGEFRF 9 Unmodified _KYVSGEFRF_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MSMS AL20221201_MKP_PDAC_01 4 566.7943115234375 2 566.792924 1131.57129 NaN NaN NaN NaN NaN NaN NaN 46.569 1 41.489 40.989 41.989 -5.0805 0 0 0 0.0010574 1 28802 28802 133.05 47.78 1 30419 3817 19872 20279 36214 36214 0.01077145334556917 KYVSINSTL 9 Unmodified _KYVSINSTL_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7866821289062 2 512.787307 1023.56006 -0.26385 -0.0001353 -0.73931 -0.00037911 -1.0032 -0.00051441 512.7867465884852 41.558 0.22625 41.558 41.441 41.668 0 19 11 2 0 0 0 0.0090524 1 22415 22415 85.642 45.692 1 13476000 30420 2541 19873 20280 36215 36215 0.049223232404415285 KYVSINSTL 9 Unmodified _KYVSINSTL_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7869873046875 2 512.787307 1023.56006 -0.39763 -0.0002039 0.3623 0.00018578 -0.035332 -1.8118E-05 512.7873589219511 41.852 0.23019 41.545 41.433 41.663 -0.30682 17 10 2 0 0 0 0.0082353 1 22204 22204 96.111 39.934 1 8878000 30421 2541 19873 20280 36216 36216 0.049223232404415285 KYVSINSTL 9 Unmodified _KYVSINSTL_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7879638671875 2 512.787307 1023.56006 0.51037 0.00026171 0.39087 0.00020043 0.90124 0.00046214 512.7876141536728 47.013 0.38082 41.933 41.731 42.112 -5.0805 72 41 2 0 0 0 0.0044708 2 29145 29007;29145 118.89 57.537 1 58941000 30422 2541 19873 20280 36217;36218 36218 0.049223232404415285 KYVSQYFEPA 10 Unmodified _KYVSQYFEPA_ 0 0 0 REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.872314453125 3 411.20464 1230.59209 -0.12491 -5.1363E-05 -1.5133 -0.00062228 -1.6382 -0.00067365 411.20384876151434 18.012 0.17434 18.018 17.921 18.095 0.0060482 15 11 2 0 0 0 0.71276 1 9124 9124 0.62683 0.17231 1 1502900 + 30423 24439 19874 20281 36219 36219 -0.01398309076444093 KYVSSVLSF 9 Unmodified _KYVSSVLSF_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2852172851562 2 515.2844 1028.55425 0.22604 0.00011648 0.0070212 3.6179E-06 0.23306 0.00012009 515.2847772384166 59.056 0.29401 58.565 58.391 58.685 -0.49079 42 13 4 0 0 0 0.036857 1 32079 32079 51.63 20.993 1 6843500 30424 10177 19875 20282 36220 36220 0.04111224728740126 KYVSSVLSF 9 Unmodified _KYVSSVLSF_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2843017578125 2 515.2844 1028.55425 0.71853 0.00037025 0.17836 9.1906E-05 0.89689 0.00046215 515.2843201044692 58.653 0.36927 58.593 58.432 58.801 -0.060719 52 18 4 0 0 0 0.017075 2 31922 31922;32022 66.457 23.947 1 17873000 30425 10177 19875 20282 36221;36222 36221 0.04111224728740126 KYVSSVLSF 9 Unmodified _KYVSSVLSF_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2842407226562 2 515.2844 1028.55425 1.2253 0.00063138 0.12018 6.1927E-05 1.3455 0.00069331 515.2839840927845 64.624 0.51743 58.449 58.167 58.684 -6.1757 62 28 3 0 0 0 0.07087 1 41950 41950 39.95 7.6442 1 62042000 30426 10177 19875 20282 36223 36223 0.04111224728740126 KYVTGAQRL 9 Unmodified _KYVTGAQRL_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MSMS AL20221201_MKP_PDAC_01 4 518.301025390625 2 518.300916 1034.58728 NaN NaN NaN NaN NaN NaN NaN 23.084 1 20.306 19.806 20.806 -2.7784 0 0 0 0.49196 1 12467 12467 16.149 2.2431 1 30427 1445 19876 20283 36224 36224 0.07136851571453917 KYVTVYNLI 9 Unmodified _KYVTVYNLI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.E100Kfs*12|1|0.1|ENSG00000138592|chr15:50449448-50449448|G/-|frameshift_variant;USP8|p.Q499Lfs*53|1|0.09|ENSG00000138592|chr15:50481755-50481756|-/ACTTTTCC|frameshift_variant ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8218994140625 2 556.82115 1111.62775 0.31098 0.00017316 0.43426 0.00024181 0.74525 0.00041497 556.8214606507588 69.173 0.36404 68.692 68.485 68.849 -0.48071 42 15 4 0 0 0 0.023481 1 37801 37801 60.074 29.437 1 6342800 30428 5063 19877 20284 36225 36225 0.07639773171217712 KYVTVYNLI 9 Unmodified _KYVTVYNLI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.E100Kfs*12|1|0.1|ENSG00000138592|chr15:50449448-50449448|G/-|frameshift_variant;USP8|p.Q499Lfs*53|1|0.09|ENSG00000138592|chr15:50481755-50481756|-/ACTTTTCC|frameshift_variant ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8217163085938 2 556.82115 1111.62775 0.8508 0.00047374 0.06262 3.4868E-05 0.91342 0.00050861 556.8212346756228 68.631 0.40105 68.656 68.479 68.88 0.025154 56 18 4 0 0 0 0.032796 1 37694 37694 53.833 15.859 1 32610000 30429 5063 19877 20284 36226 36226 0.07639773171217712 KYVTVYNLI 9 Unmodified _KYVTVYNLI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;ENST00000560954.5_1_15:50731270-50751199:+|nuORF;ENST00000558892.1_1_15:50731270-50736797:+|nuORF;USP8|p.E100Kfs*12|1|0.1|ENSG00000138592|chr15:50449448-50449448|G/-|frameshift_variant;USP8|p.Q499Lfs*53|1|0.09|ENSG00000138592|chr15:50481755-50481756|-/ACTTTTCC|frameshift_variant ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8220825195312 2 556.82115 1111.62775 1.3007 0.00072427 1.1712 0.00065217 2.472 0.0013764 556.8215472555505 86.355 0.81844 80.179 79.727 80.546 -6.1757 85 44 2 0 0 0 0.013041 3 56811 56811;56939;57060 71.922 25.901 1 33753000 30430 5063 19877 20284 36227;36228;36229 36227 0.07639773171217712 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3131103515625 2 557.313158 1112.61176 0.62261 0.00034699 -0.38714 -0.00021576 0.23547 0.00013123 557.3129096389298 57.979 0.40026 57.979 57.754 58.154 0 51 16 4 0 0 0 0.028475 2 32318 32211;32318 56.177 56.177 1 30567000 30431 8664 19878 20285 36230;36231 36231 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3138427734375 2 557.313158 1112.61176 0.46442 0.00025883 -1.4646 -0.00081622 -1.0001 -0.00055739 557.3118853392484 58.461 0.51062 57.97 57.741 58.252 -0.49079 67 24 4 0 0 0 0.028475 2 31713 31713;31819 56.177 25.541 1 56588000 30432 8664 19878 20285 36232;36233 36232 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3136596679688 2 557.313158 1112.61176 1.0427 0.00058109 -0.8163 -0.00045493 0.22636 0.00012615 557.3128434880055 58.081 0.2774 58.015 57.852 58.13 -0.066036 40 13 4 0 0 0 0.018301 1 31586 31586 65.235 65.235 1 18430000 30433 8664 19878 20285 36234 36234 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3140869140625 2 557.313158 1112.61176 1.5394 0.00085794 -0.22243 -0.00012396 1.317 0.00073398 557.3129546205853 64.069 0.71631 57.893 57.615 58.331 -6.1757 114 38 4 0 0 0 0.039985 1 41477 41477 49.933 7.8384 1 217470000 30434 8664 19878 20285 36235 36235 0.05996066934335431 KYVYVVTEL 9 Unmodified _KYVYVVTEL_ 0 0 0 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 ENSG00000177189|ENST00000379565|RPS6KA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3140869140625 2 557.313158 1112.61176 0.79939 0.00044551 0.7507 0.00041837 1.5501 0.00086388 557.313638404661 67.084 0.78931 60.909 60.428 61.217 -6.1757 76 44 2 0 0 0 0.018301 3 43646 43503;43646;43800 65.235 23.395 1 19515000 30435 8664 19878 20285 36236;36237;36238 36237 0.05996066934335431 KYWDRNYY 8 Unmodified _KYWDRNYY_ 0 0 0 REV__ENSG00000256053|ENST00000409074|COA8 REV__ENSG00000256053|ENST00000409074|COA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.1888122558594 3 403.189212 1206.54581 -0.53343 -0.00021507 -1.3814 -0.00055698 -1.9149 -0.00077206 403.1885720677273 18.357 0.1326 18.38 18.326 18.459 0.023106 68 25 4 0 0 0 0.80676 1 9185 9185 1.6526 0.58116 1 1219200 + 30436 24549 19879 20286 36239 36239 -0.04920329187871175 KYWDTFYKI 9 Unmodified _KYWDTFYKI_ 0 0 0 ENST00000460539.5_1_2:172188347-172248586:-|nuORF;nc|ENSG00000123600|Q9H825-2|METTL8;nc|ENSG00000123600|Q9H825|METTL8;ENSG00000123600|ENST00000375258|METTL8 ENST00000460539.5_1_2:172188347-172248586:-|nuORF ENST00000460539.5_1_2:172188347-172248586:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.3250122070312 2 632.324057 1262.63356 0.31727 0.00020061 0.73271 0.00046331 1.05 0.00066393 632.3247338973626 59.711 0.17991 59.658 59.574 59.754 -0.053059 14 8 2 0 0 0 0.21377 1 32571 32571 28.495 15.452 1 3268700 30437 3721 19880 20287 36240 36240 0.012748716828809847 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3035278320312 2 603.303124 1204.5917 0.16171 9.7558E-05 0.18322 0.00011054 0.34492 0.00020809 603.3031472453962 65.767 2.4631 65.283 64.082 66.545 -0.48428 265 117 3 0 0 0 0.038363 9 35943 35512;35621;35728;35837;35943;36040;36153;36263;36380 63.961 43.546 1 4708900 30438 860 19881 20288 36241;36242;36243;36244;36245;36246;36247;36248;36249 36245 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.300048828125 2 603.303124 1204.5917 NaN NaN NaN NaN NaN NaN NaN 67.291 1 66.809 66.309 67.309 -0.48218 0 0 0 0.92825 1 36760 36760 6.7232 0.99131 1 30439 860 19881 20288 36250 36250 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3037719726562 2 603.303124 1204.5917 0.59055 0.00035628 -0.86337 -0.00052087 -0.27282 -0.00016459 603.3022425586431 65.323 2.4438 65.323 64.087 66.531 7.6294E-06 214 121 4 0 0 0 0.022967 9 35387 35387;35492;35603;35705;35817;35924;36087;36190;36393 72.968 46.7 1 22226000 30440 860 19881 20288 36251;36252;36253;36254;36255;36256;36257;36258;36259 36251 -0.002416840056412184 KYWDVPPPGF 10 Unmodified _KYWDVPPPGF_ 0 0 0 nc|ENSG00000063244|P26368-2|U2AF2;ENSG00000063244|ENST00000308924|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3017578125 2 603.303124 1204.5917 0.0012579 7.5888E-07 -0.40077 -0.00024178 -0.39951 -0.00024102 603.302873655212 77.009 4.4164 70.833 69.084 73.5 -6.1757 517 251 3 0 0 0 0.012821 15 49424 49424;49544;49664;49794;49908;50030;50141;50263;50378;50497;50622;50749;50867;50998;51125 82.529 56.261 1 83793000 30441 860 19881 20288 36260;36261;36262;36263;36264;36265;36266;36267;36268;36269;36270;36271;36272;36273;36274 36260 -0.002416840056412184 KYWPLFVLF 9 Unmodified _KYWPLFVLF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MSMS AL20221201_MKP_PDAC_01 4 606.8443603515625 2 606.844428 1211.6743 NaN NaN NaN NaN NaN NaN NaN 101.9 1 95.729 95.229 96.229 -6.1757 0 0 0 0.39043 1 68403 68403 20.454 2.3186 1 30442 2220 19882 20289 36275 36275 0.0769325779317569 KYWRDFQVFDV 11 Unmodified _KYWRDFQVFDV_ 0 0 0 REV__ENST00000264370.9_1_4:113554388-113558083:-|nuORF REV__ENST00000264370.9_1_4:113554388-113558083:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.9203491210938 3 501.585743 1501.7354 -0.57305 -0.00028743 -0.13653 -6.8481E-05 -0.70958 -0.00035591 501.5856630539443 21.28 0.21389 21.309 21.208 21.422 0.028357 28 10 3 0 0 0 0.7326 1 10768 10768 0.40827 0 1 1888400 + 30443 25070 19883 20290 36276 36276 0.004601180346071487 KYWRDFQVFDV 11 Unmodified _KYWRDFQVFDV_ 0 0 0 REV__ENST00000264370.9_1_4:113554388-113558083:-|nuORF REV__ENST00000264370.9_1_4:113554388-113558083:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 501.585743 1501.7354 -0.57305 -0.00028743 -0.13653 -6.8481E-05 -0.70958 -0.00035591 501.5856630539443 21.28 0.21389 21.309 21.208 21.422 0.028357 -0.033845 0.00075399 NaN 0.40827 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1888400 + 30444 25070 19883 20290 0.004601180346071487 KYWTAANSW 9 Unmodified _KYWTAANSW_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000463112.1_1_1:32051343-32052577:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7694091796875 2 563.769448 1125.52434 0.86445 0.00048735 2.1733 0.0012252 3.0378 0.0017126 563.7691723043007 47.825 0.26389 47.787 47.661 47.924 -0.038647 31 12 3 0 0 0 0.022461 1 25763 25763 75.761 50.77 1 4620600 30445 5451 19884 20291 36277 36277 -0.03339714216599532 KYWTAANSW 9 Unmodified _KYWTAANSW_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000463112.1_1_1:32051343-32052577:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 563.769448 1125.52434 0.81878 0.00046161 2.4175 0.0013629 3.2362 0.0018245 563.7708665179728 53.295 0.37532 47.49 47.318 47.693 -5.8042 -0.14809 0.00012792 NaN 75.761 48 23 3 NaN NaN NaN NaN 0 NaN NaN 0 24232000 30446 5451 19884 20291 -0.03339714216599532 KYWTEPEEF 9 Unmodified _KYWTEPEEF_ 0 0 0 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.2789306640625 2 614.779679 1227.5448 0.38837 0.00023876 0.023497 1.4445E-05 0.41186 0.00025321 614.7798782522266 50.461 0.33452 50.461 50.308 50.643 0 41 15 4 0 0 0 0.020973 1 27794 27794 62.573 34.944 1 8619000 30447 2408 19885 20292 36278 36278 -0.05986588347423094 KYWTEPEEF 9 Unmodified _KYWTEPEEF_ 0 0 0 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 ENSG00000106258|ENST00000222982|CYP3A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.7798461914062 2 614.779679 1227.5448 0.49217 0.00030258 -0.21047 -0.00012939 0.2817 0.00017319 614.7793416381438 56.961 0.3504 50.984 50.736 51.086 -5.9769 34 20 2 0 0 0 0.0094097 1 36269 36269 82.529 46.485 1 29349000 30448 2408 19885 20292 36279 36279 -0.05986588347423094 KYYDKKYQVF 10 Unmodified _KYYDKKYQVF_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2440185546875 3 461.243206 1380.70779 0.88357 0.00040754 -0.071915 -3.317E-05 0.81166 0.00037437 461.5774387733322 34.726 0.31584 30.631 30.419 30.735 -4.0951 28 18 2 0 0 0 0.22237 1 20085 20085 32.037 24.092 1 7599700 30449 8218 19886 20293 36280 36280 0.032662147743849346 KYYDKKYQVF 10 Unmodified _KYYDKKYQVF_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 461.243206 1380.70779 0.18938 8.735E-05 -0.50098 -0.00023108 -0.3116 -0.00014373 461.5775950669934 31.136 0.11413 31.034 30.939 31.053 -0.10269 0.18102 -0.00080038 NaN 32.037 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 983640 30450 8218 19886 20293 0.032662147743849346 KYYDKKYQVF 10 Unmodified _KYYDKKYQVF_ 0 0 0 nc|ENSG00000172456|Q96C11-6|FGGY;nc|ENSG00000172456|Q96C11-4|FGGY;nc|ENSG00000172456|Q96C11-5|FGGY;ENSG00000172456|ENST00000303721|FGGY;nc|ENSG00000172456|Q96C11-3|FGGY;ENST00000493891.5_1_1:60133021-60228256:+|nuORF;ENST00000471169.5_1_1:60139457-60228253:+|nuORF nc|ENSG00000172456|Q96C11-6|FGGY nc|ENSG00000172456|Q96C11-6|FGGY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 461.243206 1380.70779 -0.0087907 -4.0546E-06 0.53631 0.00024737 0.52752 0.00024331 461.24307154477634 30.863 0.2085 30.893 30.806 31.015 0.030106 0.040481 0.00063495 NaN 32.037 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1853900 30451 8218 19886 20293 0.032662147743849346 KYYDREEEI 9 Unmodified _KYYDREEEI_ 0 0 0 REV__ENSG00000174799|ENST00000257287|CEP135 REV__ENSG00000174799|ENST00000257287|CEP135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7915649414062 2 622.793318 1243.57208 0.20899 0.00013016 -0.1638 -0.00010201 0.045188 2.8143E-05 622.7931062929231 52.505 0.22005 52.505 52.353 52.573 0 15 9 2 0 0 0 0.45045 1 29054 29054 10.074 2.7847 1 2484400 + 30452 22818 19887 20294 36281 36281 -0.039961048070381366 KYYEDNKQFF 10 Unmodified _KYYEDNKQFF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2185668945312 3 461.218949 1380.63502 0.77004 0.00035516 -1.4197 -0.00065479 -0.64966 -0.00029964 461.21826981102015 38.292 0.22288 38.292 38.235 38.458 0 35 21 2 0 0 0 0.087043 1 20455 20455 49.742 46.67 1 16647000 30453 9289 19888 20295 36282 36282 -0.04007539019039541 KYYEDNKQFF 10 Unmodified _KYYEDNKQFF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3217163085938 2 691.324785 1380.63502 NaN NaN NaN NaN NaN NaN NaN 38.356 1 38.356 37.856 38.856 0 0 0 0 0.57227 1 20482 20482 22.736 15.127 1 30454 9289 19888 20295 36283 36283 -0.04007539019039541 KYYEDNKQFF 10 Unmodified _KYYEDNKQFF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2190856933594 3 461.218949 1380.63502 -0.1335 -6.1574E-05 0.46289 0.00021349 0.32939 0.00015192 461.2190092109029 38.696 0.21681 38.409 38.303 38.52 -0.28687 25 10 3 0 0 0 0.17714 1 20383 20383 37.771 35.14 1 6099000 30455 9289 19888 20295 36284 36284 -0.04007539019039541 KYYEDNKQFF 10 Unmodified _KYYEDNKQFF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2185363769531 3 461.218949 1380.63502 1.0248 0.00047263 0.46454 0.00021425 1.4893 0.00068689 461.2188523202585 42.778 0.40313 38.093 37.902 38.305 -4.6846 69 25 4 0 0 0 0.087043 2 25805 25805;25936 36.395 31.679 1 39621000 30456 9289 19888 20295 36285;36286 36285 -0.04007539019039541 KYYEDNKQFF 10 Unmodified _KYYEDNKQFF_ 0 0 0 ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 ENSG00000184752|ENST00000327772|NDUFA12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.3258666992188 2 691.324785 1380.63502 0.67395 0.00046592 -0.0016747 -1.1578E-06 0.67227 0.00046476 691.3248381348708 42.736 0.30899 38.051 37.917 38.226 -4.6846 44 19 3 0 0 0 0.0027451 2 25833 25833;25975 105.35 78.122 1 21062000 30457 9289 19888 20295 36287;36288 36287 -0.04007539019039541 KYYELHETI 9 Unmodified _KYYELHETI_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;ENST00000536329.5_1_9:36581678-36594647:+|nuORF nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.3035888671875 2 598.303321 1194.59209 -0.10195 -6.0995E-05 0.033978 2.0329E-05 -0.067968 -4.0665E-05 598.3034854537879 35.804 0.18382 35.804 35.674 35.858 0 17 8 3 0 0 0 0.012668 1 18937 18937 72.968 38.866 1 3371900 30458 7323 19889 20296 36289 36289 0.0025769092355858447 KYYELHETI 9 Unmodified _KYYELHETI_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;ENST00000536329.5_1_9:36581678-36594647:+|nuORF nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.303955078125 2 598.303321 1194.59209 -0.016384 -9.8025E-06 0.091792 5.4919E-05 0.075408 4.5117E-05 598.3035639817549 40.376 0.34056 35.846 35.757 36.097 -4.5294 31 20 2 0 0 0 0.0086209 1 24077 24077 89.401 39.846 1 14168000 30459 7323 19889 20296 36290 36290 0.0025769092355858447 KYYELHETI 9 Unmodified _KYYELHETI_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;ENST00000536329.5_1_9:36581678-36594647:+|nuORF nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5389709472656 3 399.20464 1194.59209 0.56142 0.00022412 0.67698 0.00027025 1.2384 0.00049437 399.20514234400883 40.403 0.18149 35.874 35.806 35.988 -4.5294 14 10 2 0 0 0 0.078314 1 24135 24135 42.312 22.687 1 7187200 30460 7323 19889 20296 36291 36291 0.0025769092355858447 KYYEYEFMEL 10 Oxidation (M) _KYYEYEFM(Oxidation (M))EL_ KYYEYEFM(1)EL KYYEYEFM(50)EL 0 0 1 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 715.814697265625 2 715.812861 1429.61117 0.0067408 4.8252E-06 0.93213 0.00066723 0.93887 0.00067205 715.8136098741936 58.614 0.36821 58.614 58.441 58.809 0 64 15 6 0 0 0 0.087164 1 32582 32582 49.527 25.507 1 28318000 30461 765 19890 20297 36292 36292 119 -0.08645140567705312 KYYEYEFMEL 10 Oxidation (M) _KYYEYEFM(Oxidation (M))EL_ KYYEYEFM(1)EL KYYEYEFM(50)EL 0 0 1 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 715.81396484375 2 715.812861 1429.61117 0.16901 0.00012098 0.48918 0.00035016 0.65819 0.00047114 715.8132866725647 59.171 0.36267 58.681 58.514 58.876 -0.49079 62 16 5 0 0 0 0.087164 1 32157 32157 49.527 26.791 1 21148000 30462 765 19890 20297 36293 36293 119 -0.08645140567705312 KYYEYEFMEL 10 Oxidation (M) _KYYEYEFM(Oxidation (M))EL_ KYYEYEFM(1)EL KYYEYEFM(87)EL 0 0 1 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.8135375976562 2 715.812861 1429.61117 0.67983 0.00048663 0.14021 0.00010036 0.82004 0.00058699 715.8131223564296 64.866 0.56641 58.69 58.47 59.036 -6.1757 68 31 3 0 0 0 0.010233 2 41992 41992;42138 87.258 63.238 1 20119000 30463 765 19890 20297 36294;36295 36294 119 -0.08645140567705312 KYYEYEFMEL 10 Oxidation (M) _KYYEYEFM(Oxidation (M))EL_ KYYEYEFM(1)EL KYYEYEFM(87)EL 0 0 1 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.8121337890625 2 715.812861 1429.61117 0.46165 0.00033045 -0.48638 -0.00034816 -0.024735 -1.7706E-05 715.8124277126043 67.084 0.60883 60.908 60.537 61.146 -6.1757 52 33 2 0 0 0 0.010233 2 43576 43576;43774 87.258 57.418 1 16374000 30464 765 19890 20297 36296;36297 36296 119 -0.08645140567705312 KYYEYEFMEL 10 Unmodified _KYYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.3159790039062 2 707.815404 1413.61626 0.18112 0.0001282 -0.074995 -5.3083E-05 0.10613 7.512E-05 707.8153773875906 72.77 0.28838 72.77 72.657 72.945 0 31 14 3 0 0 0 0.71535 1 40497 40497 1.1933 0.79263 1 1971300 30465 765 19890 20298 36298 36298 -0.07400836705096481 KYYEYEFMEL 10 Unmodified _KYYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.8157348632812 2 707.815404 1413.61626 0.57263 0.00040531 -0.63298 -0.00044803 -0.060351 -4.2718E-05 707.8150869182564 73.203 0.35265 72.728 72.541 72.894 -0.47588 48 15 4 0 0 0 0.20195 2 40099 39999;40099 33.445 24.699 1 4811900 30466 765 19890 20298 36299;36300 36300 -0.07400836705096481 KYYEYEFMEL 10 Unmodified _KYYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.8171997070312 2 707.815404 1413.61626 0.72382 0.00051233 -1.7607 -0.0012462 -1.0369 -0.0007339 707.8155041022309 90.505 0.89747 84.329 83.826 84.723 -6.1757 108 52 3 0 0 0 0.0069983 4 59923 59528;59657;59790;59923 93.166 53.629 1 41911000 30467 765 19890 20298 36301;36302;36303;36304 36304 -0.07400836705096481 KYYEYEFMEL 10 Unmodified _KYYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 707.815404 1413.61626 0.20123 0.00014244 -0.10274 -7.2718E-05 0.098496 6.9717E-05 707.8150654443104 72.61 0.25517 72.652 72.527 72.782 0.041725 -0.064886 0.00030368 NaN 33.445 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1366600 30468 765 19890 20298 -0.07400836705096481 KYYIYGEPR 9 Unmodified _KYYIYGEPR_ 0 0 0 ENSG00000188408|ENST00000602297|MAGEB5 ENSG00000188408|ENST00000602297|MAGEB5 ENSG00000188408|ENST00000602297|MAGEB5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.8551025390625 3 396.873113 1187.59751 1.0878 0.00043174 -1.8817 -0.00074681 -0.79389 -0.00031507 397.20721979594214 41.106 0.37802 36.498 36.261 36.639 -4.6079 35 23 2 0 0 0 0.209 1 24577 24577 4.5289 0.68296 1 8197400 30469 9657 19891 20299 36305 36305 0.011214145060421288 KYYKEYWERYK 11 Unmodified _KYYKEYWERYK_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.41455078125 2 828.414465 1654.81438 NaN NaN NaN NaN NaN NaN NaN 89.545 1 89.593 89.093 90.093 0.047852 0 0 0 0.9435 1 49813 49813 0 0 1 + 30470 19336 19892 20300 36306 36306 0.013163452689468613 KYYLNSSLFG 10 Unmodified _KYYLNSSLFG_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MSMS AL20221201_MKP_PDAC_01 4 596.3038940429688 2 596.305864 1190.59717 NaN NaN NaN NaN NaN NaN NaN 44.329 1 39.477 38.977 39.977 -4.852 0 0 0 0.47175 1 27051 27051 27.629 0 1 + 30471 18621 19893 20301 36307 36307 0.00949994786174102 KYYNQHRYF 9 Unmodified _KYYNQHRYF_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 440.5494079589844 3 440.215761 1317.62546 0.024952 1.0984E-05 -0.41146 -0.00018113 -0.38651 -0.00017015 440.215274154233 25.472 0.12998 22.589 22.514 22.644 -2.8831 9 6 2 0 0 0 0.14565 1 13949 13949 31.268 26.862 1 2192200 30472 16123 19894 20302 36308 36308 -0.02065262513883681 KYYPKWHRKKK 11 Unmodified _KYYPKWHRKKK_ 0 0 0 REV__ENSG00000186834|ENST00000332499|HEXIM1 REV__ENSG00000186834|ENST00000332499|HEXIM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 781.2471923828125 2 781.459345 1560.90414 NaN NaN NaN NaN NaN NaN NaN 100.36 1 100.33 99.828 100.83 -0.036301 0 0 0 0.94307 1 55752 55752 0.30703 0 1 + 30473 23599 19895 20303 36309 36309 0.14612064458788154 KYYRHFFVEDV 11 Unmodified _KYYRHFFVEDV_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.9212646484375 3 501.585743 1501.7354 -0.046513 -2.333E-05 0.48918 0.00024537 0.44267 0.00022204 501.9205584176753 24.394 0.15692 24.394 24.312 24.469 0 12 7 2 0 0 0 0.73506 1 12481 12481 0.32927 0 1 1150800 + 30474 19008 19896 20304 36310 36310 0.004601180346298861 KYYRHFFVEDV 11 Unmodified _KYYRHFFVEDV_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.9213256835938 3 501.585743 1501.7354 NaN NaN NaN NaN NaN NaN NaN 24.743 1 24.741 24.241 25.241 -0.0016766 0 0 0 0.94216 1 12652 12652 0.32927 0 1 + 30475 19008 19896 20304 36311 36311 0.004601180346298861 KYYRHFFVEDV 11 Unmodified _KYYRHFFVEDV_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 501.585743 1501.7354 -0.046513 -2.333E-05 0.48918 0.00024537 0.44267 0.00022204 501.9205584176753 24.394 0.15692 24.394 24.312 24.469 0 0 0 NaN 0.32927 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1150800 + 30476 19008 19896 20304 0.004601180346298861 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3462524414062 2 616.345323 1230.67609 1.2149 0.0007488 -0.47754 -0.00029433 0.73736 0.00045447 616.345089877194 49.722 0.33343 49.674 49.512 49.846 -0.048824 43 16 4 0 0 0 0.07087 2 26926 26818;26926 39.95 10.868 1 15265000 30477 3322 19897 20305 36312;36313 36313 0.0699826681113791 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2330322265625 3 411.232641 1230.67609 0.77051 0.00031686 -0.099904 -4.1084E-05 0.67061 0.00027578 411.23256551914955 49.704 0.35382 49.655 49.492 49.846 -0.048824 64 17 5 0 0 0 0.047196 2 26826 26826;26935 41.956 17.074 1 39680000 30478 3322 19897 20305 36314;36315 36314 0.0699826681113791 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3461303710938 2 616.345323 1230.67609 1.1084 0.00068316 -0.60569 -0.00037331 0.50271 0.00030984 616.3451878370371 54.226 0.37292 48.361 48.158 48.531 -5.8653 49 21 3 0 0 0 0.008513 2 34420 34284;34420 99.755 43.578 1 19822000 30479 3322 19897 20305 36316;36317 36317 0.0699826681113791 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2333374023438 3 411.232641 1230.67609 1.4246 0.00058583 0.071264 2.9306E-05 1.4958 0.00061514 411.2325717057312 54.231 0.35783 48.366 48.158 48.516 -5.8653 46 20 3 0 0 0 0.010818 1 34325 34325 61.602 34.514 1 24723000 30480 3322 19897 20305 36318 36318 0.0699826681113791 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2334289550781 3 411.232641 1230.67609 1.1324 0.00046567 0.1476 6.0697E-05 1.28 0.00052637 411.2326751870445 81.108 0.58515 74.932 74.642 75.227 -6.1757 69 33 3 0 0 0 0.015445 2 53111 53086;53111 53.404 25.17 1 30581000 30481 3322 19897 20305 36319;36320 36320 0.0699826681113791 KYYRQTLLF 9 Unmodified _KYYRQTLLF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3463745117188 2 616.345323 1230.67609 0.82133 0.00050623 -0.085676 -5.2806E-05 0.73566 0.00045342 616.3452601017138 81.061 0.62516 74.885 74.642 75.267 -6.1757 62 35 2 0 0 0 0.0074135 3 53206 53087;53206;53336 110.67 56.842 1 27849000 30482 3322 19897 20305 36321;36322;36323 36322 0.0699826681113791 KYYVFLDACS 10 Unmodified _KYYVFLDACS_ 0 0 0 REV__ENST00000572607.1_1_17:454958-465900:-|nuORF REV__ENST00000572607.1_1_17:454958-465900:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5271606445312 3 403.526725 1207.55835 0.52126 0.00021034 -0.63451 -0.00025604 -0.11325 -4.5698E-05 403.52639190807616 85.29 0.66003 84.788 84.388 85.048 -0.5015 90 48 3 0 0 0 0.71276 1 46505 46505 0.62683 0 1 5784900 + 30483 20523 19898 20306 36324 36324 -0.037130538398514545 KYYYIPQY 8 Unmodified _KYYYIPQY_ 0 0 0 ENSG00000164182|ENST00000296597|NDUFAF2 ENSG00000164182|ENST00000296597|NDUFAF2 ENSG00000164182|ENST00000296597|NDUFAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.78662109375 2 569.2844 1136.55425 0.51524 0.00029332 -2.0527 -0.0011686 -1.5374 -0.00087523 569.283115268344 74.737 0.48442 74.737 74.52 75.004 0 41 23 2 0 0 0 0.80143 2 41516 41516;41572 5.7604 1.0044 1 950260 30484 7158 19899 20307 36325;36326 36325 -0.008567752712451693 KYYYSLVP 8 Unmodified _KYYYSLVP_ 0 0 0 REV__nc|ENSG00000003987|Q9Y216-2|MTMR7 REV__nc|ENSG00000003987|Q9Y216-2|MTMR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.771728515625 2 516.773668 1031.53278 -0.41253 -0.00021318 -0.26844 -0.00013872 -0.68097 -0.00035191 516.7730140840326 77.075 0.19337 76.595 76.457 76.651 -0.47945 11 8 2 0 0 0 0.80975 1 42203 42203 0.79363 0 1 394550 + 30485 16940 19900 20308 36327 36327 0.018278397000131008 KYYYVPADF 9 Unmodified _KYYYVPADF_ 0 0 0 nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB;ENST00000566436.1_1_16:47628094-47631731:+|nuORF nc|ENSG00000102893|Q93100-4|PHKB nc|ENSG00000102893|Q93100-4|PHKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7832641601562 2 583.281857 1164.54916 0.67673 0.00039472 -2.7009 -0.0015754 -2.0241 -0.0011806 583.2797685855107 75.423 0.24142 74.946 74.821 75.062 -0.47714 21 14 2 0 0 0 0.55144 1 41341 41341 4.3292 0.73274 1 1445900 30486 2076 19901 20309 36328 36328 -0.02653079133870051 LAAADVLEA 9 Unmodified _LAAADVLEA_ 0 0 0 nc|ENSG00000196182|Q8N2I9-2|STK40;nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40 nc|ENSG00000196182|Q8N2I9-2|STK40 nc|ENSG00000196182|Q8N2I9-2|STK40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.4730224609375 1 872.472374 871.465098 0.80997 0.00070668 0.19238 0.00016784 1.0023 0.00087452 872.4724837605737 68.621 0.51872 62.446 62.156 62.675 -6.1757 68 29 3 0 0 0 0.010877 1 44658 44658 77.984 3.5616 1 79313000 30487 9774 19902 20310 36329 36329 0.02422389769219535 LAAAEGPP 8 Unmodified _LAAAEGPP_ 0 0 0 REV__ENSG00000166439|ENST00000299563|RNF169 REV__ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.1955871582031 2 363.195054 724.375555 1.7183 0.00062409 -0.63301 -0.00022991 1.0853 0.00039419 363.1948080067808 50.745 0.32265 45.096 44.926 45.248 -5.649 27 19 2 0 0 0 0.44122 1 31823 31823 40.449 2.2974 1 21883000 + 30488 22118 19903 20311 36330 36330 0.0023417988052187866 LAAAGRAA 8 Unmodified _LAAAGRAA_ 0 0 0 ENSG00000164061|ENST00000296452|BSN;ENST00000333213.10_1_17:73512940-73517507:+|nuORF;ENST00000583818.1_1_17:73512940-73517507:+|nuORF;ENST00000583454.1_1_17:73512940-73513526:+|nuORF ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2065124511719 2 350.708663 699.402772 1.2105 0.00042453 -0.66887 -0.00023458 0.54161 0.00018995 350.7084579728737 50.277 0.48826 50.228 50.027 50.515 -0.048824 58 23 3 0 0 0 8.7369 1 27121 27121 0.69038 0 1 14901000 30489 7127 19904 20312 36331 36331 0.041047082115483136 LAAAGRAA 8 Unmodified _LAAAGRAA_ 0 0 0 ENSG00000164061|ENST00000296452|BSN;ENST00000333213.10_1_17:73512940-73517507:+|nuORF;ENST00000583818.1_1_17:73512940-73517507:+|nuORF;ENST00000583454.1_1_17:73512940-73513526:+|nuORF ENSG00000164061|ENST00000296452|BSN ENSG00000164061|ENST00000296452|BSN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1972961425781 2 350.708663 699.402772 -0.045872 -1.6088E-05 -0.35897 -0.00012589 -0.40484 -0.00014198 350.7079915105796 29.121 0.12643 29.151 29.054 29.18 0.030106 5 4 2 0 0 0 8.7369 1 15180 15180 2.3027 0 1 572400 30490 7127 19904 20312 36332 36332 0.041047082115483136 LAAALGYRERL 11 Unmodified _LAAALGYRERL_ 0 0 0 ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233196570-233200992:+|nuORF;ENST00000429283.2_1_2:233194466-233199371:+|nuORF;ENST00000445090.5_1_2:233194598-233200857:+|nuORF ENSG00000144535|ENST00000325385|DIS3L2;ENST00000445090.5_1_2:233194598-233200857:+|nuORF ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5762634277344 3 411.575178 1231.70371 -0.41141 -0.00016933 1.3291 0.00054702 0.91767 0.00037769 411.57588872214455 53.878 0.21335 53.811 53.688 53.901 -0.066936 18 10 3 0 0 0 0.67037 1 29265 29265 7.0371 1.9896 1 1911200 30491 5616;13447 19905 20313 36333 36333 0.0971217007136147 LAACQLLR 8 Unmodified _LAACQLLR_ 0 0 0 nc|ENSG00000114654|Q9HA90-2|EFCC1;ENST00000481536.2_1_3:128749483-128758688:+|nuORF;nc|ENSG00000114654|Q9HA90|EFCC1;ENSG00000114654|ENST00000683648|EFCC1 nc|ENSG00000114654|Q9HA90-2|EFCC1 nc|ENSG00000114654|Q9HA90-2|EFCC1 MSMS AL20221201_MKP_PDAC_01 4 444.2601318359375 2 444.260205 886.505857 NaN NaN NaN NaN NaN NaN NaN 48.423 1 43.189 42.689 43.689 -5.2339 0 0 0 0.96305 1 30159 30159 7.9102 2.1497 1 30492 3054 19906 20314 36334 36334 0.0580645260787378 LAADAQRYF 9 Unmodified _LAADAQRYF_ 0 0 0 ENSG00000140678|ENST00000268296|ITGAX ENSG00000140678|ENST00000268296|ITGAX ENSG00000140678|ENST00000268296|ITGAX MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7714233398438 2 527.769448 1053.52434 0.60371 0.00031862 1.3182 0.00069572 1.9219 0.0010143 527.7701372265883 44.852 0.67592 40 39.557 40.233 -4.852 96 50 2 0 0 0 0.070838 1 27425 27425 39.957 5.8549 1 44678000 30493 5263 19907 20315 36335 36335 -0.0002771421659417683 LAADDFRVKY 10 Unmodified _LAADDFRVKY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8800964355469 3 399.880267 1196.61897 -0.15504 -6.1998E-05 0.23969 9.5848E-05 0.084649 3.385E-05 399.88017992960647 44.08 0.10868 44.08 44.023 44.131 0 8 5 2 0 0 0 0.17714 1 23987 23987 44.392 31.536 1 10013000 30494 2759;12975 19908 20316 36336 36336 0.028527995347531032 LAADDFRVKY 10 Unmodified _LAADDFRVKY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8798522949219 3 399.880267 1196.61897 NaN NaN NaN NaN NaN NaN NaN 44.343 1 44.028 43.528 44.528 -0.31585 0 0 0 0.015221 1 23655 23655 53.47 28.588 1 30495 2759;12975 19908 20316 36337 36337 0.028527995347531032 LAADDFRVKY 10 Unmodified _LAADDFRVKY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8802795410156 3 399.880267 1196.61897 1.3252 0.00052991 -0.40402 -0.00016156 0.92116 0.00036835 399.88005766152014 49.575 0.35488 44.036 43.846 44.201 -5.5391 51 22 3 0 0 0 0.012821 2 30922 30922;31050 62.869 37.911 1 103120000 30496 2759;12975 19908 20316 36338;36339 36338 0.028527995347531032 LAADDFRVKY 10 Unmodified _LAADDFRVKY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;CON__H-INV:HIT000015463;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000510488.1_1_3:141190162-141190471:-|nuORF;ENST00000458108.1_1_3:32300804-32301218:+|nuORF;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3160400390625 2 599.316763 1196.61897 0.64407 0.000386 1.3424 0.00080452 1.9865 0.0011905 599.3169295478035 49.591 0.23248 44.052 43.909 44.141 -5.5391 27 14 3 0 0 0 0.01173 1 30961 30961 84.522 50.12 1 25389000 30497 2759;12975 19908 20316 36340 36340 0.028527995347531032 LAADSPIYH 9 Unmodified _LAADSPIYH_ 0 0 0 ENST00000412485.1_1_X:13284980-13285373:-|nuORF ENST00000412485.1_1_X:13284980-13285373:-|nuORF ENST00000412485.1_1_X:13284980-13285373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.750244140625 2 493.750724 985.486896 0.1032 5.0955E-05 -1.3988 -0.00069067 -1.2956 -0.00063972 493.74999773759504 37.766 0.24065 37.766 37.645 37.885 0 17 11 2 0 0 0 0.30562 1 20146 20146 16.942 0 1 2366000 30498 12987 19909 20317 36341 36341 -0.006428054822094964 LAAEGDPM 8 Unmodified _LAAEGDPM_ 0 0 0 REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF REV__ENST00000590400.1_1_19:11303345-11305238:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3627319335938 1 803.360381 802.353105 0.37978 0.0003051 0.65592 0.00052694 1.0357 0.00083204 803.3610230679678 38.794 0.26427 38.794 38.639 38.903 0 21 11 3 0 0 0 0.44122 1 20711 20711 40.449 21.01 1 2451700 + 30499 23911 19910 20318 36342 36342 -0.05597787579404212 LAAFNHLLPG 10 Unmodified _LAAFNHLLPG_ 0 0 0 ENSG00000009709|ENST00000420770|PAX7;nc|ENSG00000009709|P23759-2|PAX7;nc|ENSG00000009709|P23759-1|PAX7 ENSG00000009709|ENST00000420770|PAX7 ENSG00000009709|ENST00000420770|PAX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7984619140625 2 526.798009 1051.58147 1.1817 0.00062249 -0.55239 -0.000291 0.62926 0.00033149 526.797708633879 49.946 0.36372 49.897 49.723 50.087 -0.048828 50 16 4 0 0 0 0.50944 1 26963 26963 15.847 0 1 16936000 30500 405 19911 20319 36343 36343 0.05773753059793307 LAAGAPPQD 9 Unmodified _LAAGAPPQD_ 0 0 0 ENSG00000125820|ENST00000377142|NKX2-2 ENSG00000125820|ENST00000377142|NKX2-2 ENSG00000125820|ENST00000377142|NKX2-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2161865234375 2 420.216517 838.418482 -0.20805 -8.7426E-05 0.98529 0.00041403 0.77724 0.00032661 420.2166083931174 45.327 0.14946 45.327 45.23 45.379 0 11 7 2 0 0 0 0.03568 1 24708 24708 52.268 6.2474 1 10048000 30501 3889 19912 20320 36344 36344 -0.007190500620481544 LAAHPACH 8 Unmodified _LAAHPACH_ 0 0 0 ENST00000343855.5_1_7:150029108-150029612:+|nuORF ENST00000343855.5_1_7:150029108-150029612:+|nuORF ENST00000343855.5_1_7:150029108-150029612:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2000732421875 2 410.200148 818.385742 0.48937 0.00020074 -0.99367 -0.0004076 -0.5043 -0.00020686 410.1999686509538 87.213 0.36101 86.709 86.516 86.877 -0.50423 31 14 3 0 0 0 0.80975 1 47762 47762 0.79363 0 1 877020 30502 12007 19913 20321 36345 36345 -0.030715356659015924 LAAKFTEVY 9 Unmodified _LAAKFTEVY_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.28466796875 2 521.2844 1040.55425 0.64754 0.00033755 2.2862 0.0011918 2.9338 0.0015293 521.2860554816092 46.616 0.38296 46.616 46.436 46.819 0 38 17 3 0 0 0 0.023481 1 25443 25443 60.074 27.288 1 14869000 30503 3399 19914 20322 36346 36346 0.0355922472876955 LAAKFTEVY 9 Unmodified _LAAKFTEVY_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.284912109375 2 521.2844 1040.55425 0.54637 0.00028481 2.3803 0.0012408 2.9267 0.0015256 521.2865266481443 46.892 0.39021 46.555 46.385 46.775 -0.33664 48 19 4 0 0 0 0.01958 1 25063 25063 63.961 24.003 1 63777000 30504 3399 19914 20322 36347 36347 0.0355922472876955 LAAKFTEVY 9 Unmodified _LAAKFTEVY_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2852783203125 2 521.2844 1040.55425 1.1748 0.00061242 -0.08768 -4.5706E-05 1.0871 0.00056671 521.284203563168 46.606 0.22345 46.572 46.452 46.675 -0.033417 25 10 3 0 0 0 0.047788 1 25090 25090 45.7 20.3 1 6398300 30505 3399 19914 20322 36348 36348 0.0355922472876955 LAAKFTEVY 9 Unmodified _LAAKFTEVY_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.284423828125 2 521.2844 1040.55425 1.0491 0.00054687 -1.1861 -0.00061827 -0.13698 -7.1406E-05 521.2835347199723 52.658 0.4297 46.924 46.707 47.137 -5.7345 41 23 2 0 0 0 0.023481 1 33228 33228 60.074 20.117 1 241240000 30506 3399 19914 20322 36349 36349 0.0355922472876955 LAALKPLSV 9 Unmodified _LAALKPLSV_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.3003540039062 2 456.299853 910.585153 1.6422 0.00074933 -0.58258 -0.00026583 1.0596 0.00048349 456.29928581768434 105.25 0.34517 99.073 98.891 99.236 -6.1757 261 82 5 0 0 0 0.61381 1 70379 70379 0.52476 0 1 10916000000 + 30507 21362 19915 20323 36350 36350 0.12628422833643071 LAALPSSW 8 Unmodified _LAALPSSW_ 0 0 0 ENST00000524571.6_1_8:12043687-12049316:-|nuORF;ENST00000506770.5_1_4:3949295-3954861:-|nuORF;ENST00000313946.12_1_4:3949295-3954866:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7315673828125 2 422.731803 843.449054 0.45846 0.0001938 -0.087544 -3.7007E-05 0.37091 0.0001568 422.73165267785146 88.297 0.43951 87.793 87.561 88 -0.50423 51 19 3 0 0 0 0.44122 1 48329 48329 40.449 10.224 1 5062600 30508 14779 19916 20324 36351 36351 0.021067283229854183 LAALPSSW 8 Unmodified _LAALPSSW_ 0 0 0 ENST00000524571.6_1_8:12043687-12049316:-|nuORF;ENST00000506770.5_1_4:3949295-3954861:-|nuORF;ENST00000313946.12_1_4:3949295-3954866:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000524571.6_1_8:12043687-12049316:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7321166992188 2 422.731803 843.449054 1.5052 0.0006363 1.3979 0.00059095 2.9031 0.0012272 422.7316691371509 96.355 1.0532 90.179 89.569 90.622 -6.1757 101 63 2 0 0 0 0.44122 1 63612 63612 40.449 6.2612 1 17014000 30509 14779 19916 20324 36352 36352 0.021067283229854183 LAALSWQY 8 Unmodified _LAALSWQY_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 951.4946899414062 1 951.493444 950.486168 1.5147 0.0014412 1.6073 0.0015294 3.122 0.0029706 951.4950208391155 71.06 0.22563 71.096 70.979 71.205 0.035515 17 9 2 0 0 0 0.19755 1 39086 39086 70.865 17.289 1 1886800 30510 1279 19917 20325 36353 36353 0.008943998687414023 LAAMCFPKV 9 Unmodified _LAAMCFPKV_ 0 0 0 ENST00000532086.1_1_16:3115767-3117689:+|nuORF;ENST00000532247.5_1_16:3115647-3117689:+|nuORF ENST00000532086.1_1_16:3115767-3117689:+|nuORF ENST00000532086.1_1_16:3115767-3117689:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2594299316406 2 490.258816 978.50308 0.19345 9.4841E-05 1.0654 0.00052234 1.2589 0.00061718 490.2593136152052 78.14 0.32962 78.14 77.984 78.313 0 30 13 3 0 0 0 0.54444 1 43502 43502 4.756 1.8668 1 1716700 30511 14924 19918 20326 36354 36354 0.01296861158698448 LAANLYTDI 9 Unmodified _LAANLYTDI_ 0 0 0 REV__ENST00000497678.2_1_1:52834449-52834671:+|nuORF REV__ENST00000497678.2_1_1:52834449-52834671:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2675476074219 2 497.266207 992.517862 0.89404 0.00044458 1.3607 0.00067661 2.2547 0.0011212 497.2667953030245 50.678 0.2378 50.625 50.49 50.728 -0.053871 26 11 3 0 0 0 0.25681 1 27381 27381 19.257 1.1106 1 3215400 + 30512 19403 19919 20327 36355 36355 0.02130347832053303 LAAPAPEPY 9 Unmodified _LAAPAPEPY_ 0 0 0 REV__ENSG00000170604|ENST00000302165|IRF2BP1 REV__ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7422790527344 2 464.742368 927.470183 -0.091232 -4.2399E-05 1.6094 0.00074797 1.5182 0.00070557 464.7428923273002 48.707 0.22891 48.707 48.6 48.828 0 18 10 2 0 0 0 0.10925 1 26756 26756 32.117 1.8922 1 1851200 + 30513 22495 19920 20328 36356 36356 0.003546936318457483 LAAPGHHV 8 Unmodified _LAAPGHHV_ 0 0 0 REV__ENST00000568368.1_1_16:58756047-58768190:-|nuORF REV__ENST00000568368.1_1_16:58756047-58768190:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2227478027344 2 401.221937 800.429321 0.61032 0.00024487 0.25498 0.0001023 0.8653 0.00034718 401.2219412778007 49.53 0.4735 49.481 49.29 49.763 -0.048828 57 23 3 0 0 0 0.80624 1 26710 26710 2.8892 0 1 14112000 + 30514 28942 19921 20329 36357 36357 0.021123971028941924 LAAPICLLY 9 Carbamidomethyl (C) _LAAPIC(Carbamidomethyl (C))LLY_ LAAPIC(1)LLY LAAPIC(46)LLY 0 1 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MSMS AL20221201_MKP_PDAC_01 4 517.2908325195312 2 517.291171 1032.56779 NaN NaN NaN NaN NaN NaN NaN 99.879 1 93.703 93.203 94.203 -6.1757 0 0 0 0.09083 1 66650 66650 45.75 17.577 1 30515 463 19922 20330 36358 36358 27 0.05280759236347876 LAAPTVNQF 9 Unmodified _LAAPTVNQF_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7620544433594 2 480.761092 959.507631 0.12487 6.0032E-05 -0.26946 -0.00012954 -0.14459 -6.9512E-05 480.7610922863046 54.604 0.23286 54.137 53.989 54.222 -0.46664 19 11 2 0 0 0 0.25297 1 29578 29578 19.439 0 1 2143100 30516 5691 19923 20331 36359 36359 0.026257848974637454 LAAREVIAY 9 Unmodified _LAAREVIAY_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2898254394531 2 503.290017 1004.56548 1.0058 0.00050619 -1.2708 -0.00063957 -0.26501 -0.00013338 503.2895921455118 42.517 0.24308 42.517 42.382 42.625 0 25 11 3 0 0 0 0.19361 1 23052 23052 23.79 7.6407 1 3919400 30517 2877 19924 20332 36360 36360 0.06338046822895649 LAARGVNS 8 Unmodified _LAARGVNS_ 0 0 0 ENST00000476203.2_1_1:78326890-78327025:+|nuORF ENST00000476203.2_1_1:78326890-78327025:+|nuORF ENST00000476203.2_1_1:78326890-78327025:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.4757995605469 2 394.224677 786.434801 0.98254 0.00038734 -3.5052 -0.0013818 -2.5227 -0.0009945 394.22308876586595 18.63 0.19993 16.009 15.906 16.106 -2.6215 38 20 3 0 0 0 8.7369 1 9798 9798 10.824 0 1 2713000 30518 13975 19925 20333 36361 36361 0.03304075894709513 LAARQEVLA 9 Unmodified _LAARQEVLA_ 0 0 0 REV__ENSG00000177051|ENST00000317683|FBXO46 REV__ENSG00000177051|ENST00000317683|FBXO46 MSMS AL20221201_MKP_PDAC_01 4 485.7873840332031 2 485.787641 969.56073 NaN NaN NaN NaN NaN NaN NaN 59.996 1 53.881 53.381 54.381 -6.1147 0 0 0 0.29524 1 38577 38577 25.399 0.40835 1 + 30519 22959 19926 20334 36362 36362 0.07473162680139467 LAASLEAFE 9 Unmodified _LAASLEAFE_ 0 0 0 ENSG00000184675|ENST00000374869|AMER1 ENSG00000184675|ENST00000374869|AMER1 ENSG00000184675|ENST00000374869|AMER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4917602539062 1 950.482939 949.475663 -0.011187 -1.0633E-05 0.5865 0.00055746 0.57531 0.00054683 950.4828132769574 78.561 0.80776 72.385 72.142 72.95 -6.1757 87 48 2 0 0 0 0.18465 1 51701 51701 24.674 0 1 31458000 30520 9283 19927 20335 36363 36363 -0.0010962757633024012 LAASLLHVSL 10 Unmodified _LAASLLHVSL_ 0 0 0 ENSG00000175344|ENST00000306901|CHRNA7;nc|ENSG00000175344|P36544-3|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 ENSG00000175344|ENST00000306901|CHRNA7 MSMS AL20221201_MKP_PDAC_01 4 512.3152465820312 2 512.313492 1022.61243 NaN NaN NaN NaN NaN NaN NaN 84.644 1 78.469 77.969 78.969 -6.1757 0 0 0 0.95103 1 55701 55701 5.7319 0.97584 1 30521 8512 19928 20336 36364 36364 0.10202906374036047 LAASTALAL 9 Unmodified _LAASTALAL_ 0 0 0 REV__nc|ENSG00000159921|Q9Y223-5|GNE REV__nc|ENSG00000159921|Q9Y223-5|GNE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 830.4967041015625 1 830.498195 829.490919 0.010085 8.3752E-06 -0.098207 -8.1561E-05 -0.088122 -7.3185E-05 830.4979327458656 71.164 0.29024 70.687 70.526 70.816 -0.47736 21 12 2 0 0 0 0.045537 2 38902 38902;39000 46.921 10.305 1 1689700 + 30522 21507 19929 20337 36365;36366 36365 0.06935284011501608 LAASTALAL 9 Unmodified _LAASTALAL_ 0 0 0 REV__nc|ENSG00000159921|Q9Y223-5|GNE REV__nc|ENSG00000159921|Q9Y223-5|GNE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 830.498195 829.490919 0.010085 8.3752E-06 -0.098207 -8.1561E-05 -0.088122 -7.3185E-05 830.4979327458656 71.164 0.29024 70.687 70.526 70.816 -0.47736 -0.03054 0.00047951 NaN 46.921 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1689700 + 30523 21507 19929 20337 0.06935284011501608 LAASVFTCLAI 11 Unmodified _LAASVFTCLAI_ 0 0 0 nc|ENSG00000137500|Q9GZT6-3|CCDC90B;nc|ENSG00000137500|Q9GZT6-2|CCDC90B;ENSG00000137500|ENST00000529689|CCDC90B;ENST00000260054.8_1_11:82972955-82984922:-|nuORF nc|ENSG00000137500|Q9GZT6-3|CCDC90B nc|ENSG00000137500|Q9GZT6-3|CCDC90B MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7939453125 2 554.807185 1107.59982 1.2653 0.000702 2.2534 0.0012502 3.5187 0.0019522 555.3085413049142 95.335 0.2766 89.159 88.988 89.264 -6.1757 19 15 2 0 0 0 0.25654 1 63037 63037 29.082 0 1 21472000 30524 4941 19930 20338 36367 36367 0.0503212691949102 LAAVSARRPI 10 Unmodified _LAAVSARRPI_ 0 0 0 REV__ENST00000523073.5_1_8:56668963-56685889:-|nuORF REV__ENST00000523073.5_1_8:56668963-56685889:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.3036499023438 2 527.330008 1052.64546 0.96152 0.00050704 -1.9126 -0.0010086 -0.9511 -0.00050154 527.3282121661083 101.37 0.048065 95.192 95.163 95.211 -6.1757 4 2 2 0 0 0 0.22667 1 67993 67993 15.847 5.0233 1 5544100 + 30525 25629 19931 20339 36368 36368 0.12124533216751843 LACILPFKY 9 Unmodified _LACILPFKY_ 0 0 0 ENSG00000156253|ENST00000493196|RWDD2B;ENST00000472184.1_1_21:30378740-30380682:-|nuORF;ENST00000466746.1_1_21:30380520-30380682:-|nuORF ENSG00000156253|ENST00000493196|RWDD2B ENSG00000156253|ENST00000493196|RWDD2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.76513671875 2 534.301539 1066.58852 1.2961 0.00069251 0.65764 0.00035138 1.9537 0.0010439 534.3019693969879 35.864 0.34141 31.671 31.512 31.853 -4.1928 36 21 2 0 0 0 0.20528 1 20987 20987 8.5933 8.5933 1 12281000 30526 6442 19932 20340 36369 36369 0.05789349616020445 LACMMTITF 9 Unmodified _LACMMTITF_ 0 0 0 ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;ENSG00000127419|ENST00000264771|TMEM175;ENST00000502513.1_1_4:944259-945532:+|nuORF ENST00000515876.5_1_4:941527-949679:+|nuORF ENST00000515876.5_1_4:941527-949679:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.742919921875 2 515.742142 1029.46973 0.47148 0.00024316 0.46838 0.00024157 0.93986 0.00048473 515.7424998014715 74.6 0.31102 74.6 74.428 74.739 0 25 13 2 0 0 0 0.28047 1 41536 41536 18.135 1.1927 1 1831900 30527 4007 19933 20341 36370 36370 -0.04382508675507779 LACQGVWAGCQ 11 Unmodified _LACQGVWAGCQ_ 0 0 0 REV__ENSG00000213533|ENST00000355083|STIMATE REV__ENSG00000213533|ENST00000355083|STIMATE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.4989624023438 3 379.172288 1134.49503 NaN NaN NaN NaN NaN NaN NaN 87.633 1 87.129 86.629 87.629 -0.50423 0 0 0 0.94165 1 47935 47935 0.45452 0.21867 1 + 30528 24285 19934 20342 36371 36371 -0.06683317828742474 LACSDSEECSL 11 Unmodified _LACSDSEECSL_ 0 0 0 REV__ENSG00000189319|ENST00000337318|FAM53B REV__ENSG00000189319|ENST00000337318|FAM53B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.73046875 2 578.728471 1155.44239 0.5336 0.00030881 1.8904 0.001094 2.424 0.0014028 578.7298512986844 59.7 0.37368 59.7 59.465 59.839 0 38 16 3 0 0 0 0.67922 1 33204 33204 6.2058 0 1 5940200 + 30529 23777 19935 20343 36372 36372 -0.12911365472837133 LACSDSEECSL 11 Unmodified _LACSDSEECSL_ 0 0 0 REV__ENSG00000189319|ENST00000337318|FAM53B REV__ENSG00000189319|ENST00000337318|FAM53B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.787109375 2 578.728471 1155.44239 0.5336 0.00030881 1.8904 0.001094 2.424 0.0014028 578.7298512986844 59.7 0.37368 59.7 59.465 59.839 0 38 16 3 0 0 0 0.29947 1 33148 33148 6.7232 0.99131 1 5940200 + 30530 23777 19935 20343 36373 36373 -0.12911365472837133 LACWCCLCFRC 11 Unmodified _LACWCCLCFRC_ 0 0 0 REV__ENST00000402802.7_1_7:536981-537197:-|nuORF REV__ENST00000402802.7_1_7:536981-537197:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.8004150390625 3 440.844132 1319.51057 NaN NaN NaN NaN NaN NaN NaN 0.27085 1 0.24879 -0.25121 0.74879 -0.022065 0 0 0 0.9435 1 145 145 0 0 1 + 30531 26619 19936 20344 36374 36374 -0.1364081389920102 LADAGYDVWL 10 Unmodified _LADAGYDVWL_ 0 0 0 ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF ENSG00000182333|ENST00000238983|LIPF ENSG00000182333|ENST00000238983|LIPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8542785644531 3 374.853718 1121.53933 1.3321 0.00049936 1.002 0.00037561 2.3341 0.00087496 375.1883920979432 22.137 0.13626 19.402 19.335 19.471 -2.7348 9 6 2 0 0 0 0.66569 1 11912 11912 3.5871 0.74377 1 1373700 30532 9048 19937 20345 36375 36375 -0.016582671392370685 LADAGYDVWL 10 Unmodified _LADAGYDVWL_ 0 0 0 ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF ENSG00000182333|ENST00000238983|LIPF ENSG00000182333|ENST00000238983|LIPF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 374.853718 1121.53933 -0.52143 -0.00019546 0.68612 0.0002572 0.1647 6.1737E-05 374.8541141146189 19.263 0.13582 19.286 19.184 19.32 0.023106 -0.058169 -0.00019983 NaN 3.5871 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 313670 30533 9048 19937 20345 -0.016582671392370685 LADATIEIN 9 Unmodified _LADATIEIN_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2572021484375 2 480.25584 958.497126 1.6917 0.00081245 -0.97318 -0.00046738 0.71853 0.00034508 480.2555056936707 47.698 0.34846 42.464 42.327 42.675 -5.2339 30 20 2 0 0 0 0.042911 1 29585 29585 48.346 12.302 1 9841600 30534 2063 19938 20346 36376 36376 0.016217574523807343 LADDLEKNFP 10 Unmodified _LADDLEKNFP_ 0 0 0 ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 580.7572631835938 2 581.292953 1160.57135 0.56374 0.0003277 -1.9268 -0.00112 -1.3631 -0.00079233 581.7942746796854 82.138 0.77325 75.962 75.566 76.339 -6.1757 62 42 2 0 0 0 0.22327 1 54179 54179 9.3831 0.63772 1 9371200 30535 7530 19939 20347 36377 36377 -0.0025089945609124698 LADELITVY 9 Unmodified _LADELITVY_ 0 0 0 ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENST00000479237.5_1_9:131770965-131773053:-|nuORF ENST00000479237.5_1_9:131770965-131773053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.782470703125 2 518.78169 1035.54883 0.43255 0.0002244 0.3043 0.00015787 0.73685 0.00038227 518.7817401609597 72.537 0.41096 72.537 72.306 72.717 0 43 16 4 0 0 0 0.023164 1 40369 40369 60.39 9.5345 1 6709400 30536 5920 19940 20348 36378 36378 0.03247501146279319 LADELITVY 9 Unmodified _LADELITVY_ 0 0 0 ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENST00000479237.5_1_9:131770965-131773053:-|nuORF ENST00000479237.5_1_9:131770965-131773053:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7816772460938 2 518.78169 1035.54883 0.92624 0.00048052 -0.87688 -0.00045491 0.049362 2.5608E-05 518.7813513343968 81.01 0.37672 74.834 74.585 74.961 -6.1757 26 20 2 0 0 0 0.023164 1 53102 53102 60.39 18.295 1 15506000 30537 5920 19940 20348 36379 36379 0.03247501146279319 LADELITVY 9 Unmodified _LADELITVY_ 0 0 0 ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENST00000479237.5_1_9:131770965-131773053:-|nuORF ENST00000479237.5_1_9:131770965-131773053:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.78169 1035.54883 0.58891 0.00030551 0.48634 0.0002523 1.0752 0.00055782 518.7820990659566 73.017 0.28877 72.541 72.341 72.63 -0.47588 0.002168 0.00017625 NaN 60.39 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1818400 30538 5920 19940 20348 0.03247501146279319 LADELTAI 8 Unmodified _LADELTAI_ 0 0 0 ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000183347|ENST00000370456|GBP6 ENSG00000183347|ENST00000370456|GBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 845.4616088867188 1 845.461475 844.454199 -0.0031433 -2.6575E-06 0.99568 0.00084181 0.99254 0.00083915 845.4624146673536 63.14 0.21329 63.14 63.031 63.244 0 12 8 2 0 0 0 0.5953 1 35206 35206 26.341 1.6674 1 639850 30539 9141 19941 20349 36380 36380 0.0257498739492803 LADEPSQEEE 10 Unmodified _LADEPSQEEE_ 0 0 0 REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant REV__SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8309631347656 3 382.831419 1145.47243 -0.53097 -0.00020327 1.2326 0.00047187 0.70161 0.0002686 382.8311397463567 78.268 0.27597 77.782 77.588 77.864 -0.48595 20 11 2 0 0 0 0.69377 1 42867 42867 1.7423 0 1 967870 + 30540 17931 19942 20350 36381 36381 -0.09448967211642412 LADETLLKV 9 Unmodified _LADETLLKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2977600097656 2 501.297507 1000.58046 0.0047318 2.3721E-06 -0.62103 -0.00031132 -0.6163 -0.00030895 501.2971055209306 55.231 0.33798 55.231 55.029 55.367 0 22 14 2 0 0 0 0.025842 1 30671 30671 57.722 23.62 1 3038800 30541 2962 19943 20351 36382 36382 0.08019493900246744 LADEVITVF 9 Unmodified _LADEVITVF_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7768249511719 2 503.776408 1005.53826 0.48326 0.00024345 0.6123 0.00030846 1.0956 0.00055192 503.7766254405538 81.319 0.36966 81.319 81.121 81.491 0 45 16 4 0 0 0 0.41742 1 45066 45066 11.64 3.047 1 3113000 30542 1681 19944 20352 36383 36383 0.03571518491855841 LADEVITVF 9 Unmodified _LADEVITVF_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1;nc|ENSG00000097033|Q9Y371-3|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.776123046875 2 503.776408 1005.53826 0.25396 0.00012794 0.45305 0.00022824 0.70701 0.00035617 503.77644103690426 81.816 0.46094 81.321 81.037 81.498 -0.4952 38 17 3 0 0 0 0.30562 1 44752 44752 16.942 5.302 1 1715500 30543 1681 19944 20352 36384 36384 0.03571518491855841 LADGTLAIF 9 Unmodified _LADGTLAIF_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3 nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5098266601562 1 920.50876 919.501483 0.38839 0.00035751 0.29559 0.00027209 0.68397 0.0006296 920.508359030377 82.5 0.30988 82.005 81.794 82.104 -0.4952 19 12 2 0 0 0 0.14602 1 45212 45212 28.487 8.0332 1 717470 30544 384 19945 20353 36385 36385 0.03851266665935782 LADGVQKV 8 Unmodified _LADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2422790527344 2 415.242535 828.470518 -0.70458 -0.00029257 0.25745 0.0001069 -0.44713 -0.00018567 415.242641444325 28.616 0.18033 28.616 28.503 28.683 0 11 8 2 0 0 0 0.44629 1 14802 14802 39.957 15.283 1 1744300 30545 1799 19946 20354 36386 36386 0.04942113351705757 LADGVQKV 8 Unmodified _LADGVQKV_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MSMS AL20221201_MKP_PDAC_01 4 415.2426452636719 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 33.074 1 29.218 28.718 29.718 -3.8562 0 0 0 0.25481 1 18936 18936 74.423 26.077 1 30546 1799 19946 20354 36387 36387 0.04942113351705757 LADLADRPF 9 Unmodified _LADLADRPF_ 0 0 0 REV__ENST00000473120.1_1_1:36553538-36553784:+|nuORF REV__ENST00000473120.1_1_1:36553538-36553784:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7405700683594 2 509.271824 1016.5291 0.56249 0.00028646 -3.0268 -0.0015414 -2.4643 -0.001255 509.2706197248723 49.996 0.22106 49.604 49.471 49.692 -0.3923 20 10 3 0 0 0 0.18882 1 26958 26958 10.824 0 1 1564000 + 30547 27532 19947 20355 36388 36388 0.021491699261900976 LADLPYQR 8 Unmodified _LADLPYQR_ 0 0 0 REV__ENSG00000255423|ENST00000533473|EBLN2 REV__ENSG00000255423|ENST00000533473|EBLN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2652893066406 2 488.266542 974.51853 NaN NaN NaN NaN NaN NaN NaN 74.609 1 74.609 74.109 75.109 0 0 0 0 0.95607 1 41513 41513 9.3474 3.587 1 + 30548 24537 19948 20356 36389 36389 0.030251872717599326 LADLRRSL 8 Unmodified _LADLRRSL_ 0 0 0 REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2883605957031 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.80143 1 63352 63352 5.7604 0 1 250360000 + 30549 27917 19949 20357 36390 36390 0.08748582399982752 LADLVDISF 9 Unmodified _LADLVDISF_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5281982421875 1 992.529889 991.522613 0.19649 0.00019502 -0.060883 -6.0429E-05 0.13561 0.0001346 992.5296992975939 74.616 0.39561 74.616 74.388 74.784 0 54 17 4 0 0 0 0.095405 1 41434 41434 34.102 1.9855 1 16864000 + 30550 23294 19950 20358 36391 36391 0.026512319748121627 LADLVDISF 9 Unmodified _LADLVDISF_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.5366821289062 1 992.529889 991.522613 0.62994 0.00062523 -1.49 -0.0014789 -0.86004 -0.00085362 992.5285560446463 75.098 0.30619 74.621 74.453 74.759 -0.47714 28 13 3 0 0 0 0.41742 1 41110 41110 11.64 0 1 4001400 + 30551 23294 19950 20358 36392 36392 0.026512319748121627 LADLVDISF 9 Unmodified _LADLVDISF_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7678527832031 2 496.768583 991.522613 0.7388 0.00036701 -0.87086 -0.00043261 -0.13206 -6.5604E-05 496.7679002838875 75.108 0.39575 74.631 74.405 74.801 -0.47714 42 17 4 0 0 0 0.23158 1 41172 41172 20.454 2.3186 1 6608400 + 30552 23294 19950 20358 36393 36393 0.026512319748121627 LADLVDISF 9 Unmodified _LADLVDISF_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 992.5267333984375 1 992.529889 991.522613 0.59441 0.00058997 -0.34905 -0.00034644 0.24536 0.00024353 992.5298009943139 74.602 0.20573 74.648 74.522 74.728 0.045959 12 8 2 0 0 0 0.14602 1 41126 41126 28.487 3.813 1 1365300 + 30553 23294 19950 20358 36394 36394 0.026512319748121627 LADNDEEDE 9 Unmodified _LADNDEEDE_ 0 0 0 REV__ENST00000578529.5_1_18:214628-260326:-|nuORF REV__ENST00000578529.5_1_18:214628-260326:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.850341796875 3 350.468369 1048.38328 0.052337 1.8343E-05 -3.5823 -0.0012555 -3.53 -0.0012372 350.8002985229295 37.634 0.23495 37.634 37.529 37.764 0 25 11 3 0 0 0 0.21874 1 20114 20114 1.1933 0.23107 1 1453800 + 30554 17642 19951 20359 36395 36395 -0.13897802171186413 LADNWRKL 8 Unmodified _LADNWRKL_ 0 0 0 ENST00000400977.3_1_1:168419926-168419959:-|nuORF;ENST00000369046.8_1_6:107097010-107100239:+|nuORF ENST00000400977.3_1_1:168419926-168419959:-|nuORF ENST00000400977.3_1_1:168419926-168419959:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2876281738281 2 508.287808 1014.56106 NaN NaN NaN NaN NaN NaN NaN 75.227 1 75.227 74.727 75.727 0 0 0 0 0.9706 1 41850 41850 6.3541 0 1 30555 12291 19952 20360 36396 36396 0.054365823999773966 LADPASLSV 9 Unmodified _LADPASLSV_ 0 0 0 REV__ENSG00000137642|ENST00000260197|SORL1 REV__ENSG00000137642|ENST00000260197|SORL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7394409179688 2 436.739825 871.465098 NaN NaN NaN NaN NaN NaN NaN 57.76 1 57.76 57.26 58.26 0 0 0 0 0.46757 1 32149 32149 16.942 0 1 + 30556 20256 19953 20361 36397 36397 0.024223897692309038 LADRRRWLF 9 Unmodified _LADRRRWLF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|352|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|352|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2373962402344 3 411.57188 1231.69381 0.24185 9.9538E-05 0.16948 6.9753E-05 0.41133 0.00016929 411.57210721296457 40.572 0.62949 40.577 40.088 40.717 0.0050545 39 29 2 0 0 0 0.21767 1 21611 21611 1.1933 0 1 3044900 + 30557 29432 19954 20362 36398 36398 0.08723026856637262 LADVAENGEAL 11 Unmodified _LADVAENGEAL_ 0 0 0 ENSG00000166126|ENST00000299155|AMN;ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENST00000558590.1_1_14:103395319-103397951:+|nuORF ENSG00000166126|ENST00000299155|AMN ENSG00000166126|ENST00000299155|AMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2785034179688 2 551.274761 1100.53497 0.42091 0.00023204 3.3545 0.0018493 3.7754 0.0020813 551.2763923435382 50.313 0.28525 50.313 50.171 50.456 0 17 12 2 0 0 0 0.30985 1 27729 27729 26.268 0.86883 1 1759700 30558 7432 19955 20363 36399 36399 -0.011277763528141804 LADYSIQLT 9 Unmodified _LADYSIQLT_ 0 0 0 REV__nc|ENSG00000165689|Q96C92-4|ENTR1 REV__nc|ENSG00000165689|Q96C92-4|ENTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2715454101562 2 512.27149 1022.52843 0.22395 0.00011472 -2.5671 -0.001315 -2.3431 -0.0012003 512.2706009964476 37.752 0.18153 37.752 37.625 37.806 0 15 8 2 0 0 0 0.10734 1 20103 20103 32.305 0 1 2941300 + 30559 22038 19956 20364 36400 36400 0.01806330486465413 LAEACDEP 8 Unmodified _LAEACDEP_ 0 0 0 REV__ENSG00000134070|ENST00000256458|IRAK2 REV__ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 847.3497314453125 1 847.35021 846.342934 0.03397 2.8784E-05 -0.24336 -0.00020622 -0.20939 -0.00017743 847.3500424484957 47.138 0.22803 47.138 47.022 47.25 0 15 10 2 0 0 0 0.50586 1 25788 25788 34.187 2.0704 1 2200800 + 30560 19950 19957 20365 36401 36401 -0.08638395304649293 LAEACDEP 8 Unmodified _LAEACDEP_ 0 0 0 REV__ENSG00000134070|ENST00000256458|IRAK2 REV__ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.351806640625 1 847.35021 846.342934 1.0395 0.00088083 -0.42463 -0.00035981 0.61488 0.00052102 847.3503096056278 55.264 0.45994 49.343 49.113 49.573 -5.9211 62 28 3 0 0 0 0.35156 2 35051 35051;35184 49.669 2.748 1 50299000 + 30561 19950 19957 20365 36402;36403 36402 -0.08638395304649293 LAEACDEP 8 Unmodified _LAEACDEP_ 0 0 0 REV__ENSG00000134070|ENST00000256458|IRAK2 REV__ENSG00000134070|ENST00000256458|IRAK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 847.35021 846.342934 0.03397 2.8784E-05 -0.24336 -0.00020622 -0.20939 -0.00017743 847.3500424484957 47.138 0.22803 47.138 47.022 47.25 0 0 0 NaN 34.187 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2200800 + 30562 19950 19957 20365 -0.08638395304649293 LAEALASGVI 10 Unmodified _LAEALASGVI_ 0 0 0 ENSG00000077454|ENST00000310300|LRCH4;ENST00000485071.2_1_7:100173012-100174533:-|nuORF ENSG00000077454|ENST00000310300|LRCH4 ENSG00000077454|ENST00000310300|LRCH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 943.9429321289062 1 943.545874 942.538597 0.86865 0.00081961 -0.27108 -0.00025577 0.59757 0.00056384 943.5456678611887 80.081 0.28046 79.592 79.454 79.734 -0.48932 16 10 2 0 0 0 0.31022 1 43844 43844 26.884 2.2098 1 475490 30563 1218 19958 20366 36404 36404 0.06502938211713172 LAECHNLLPEQ 11 Unmodified _LAECHNLLPEQ_ 0 0 0 ENST00000530298.5_1_1:156845639-156851431:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1;CEL-NTRK1|2|fusion;CEL-NTRK1|1|fusion ENST00000530298.5_1_1:156845639-156851431:+|nuORF ENST00000530298.5_1_1:156845639-156851431:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2107543945312 3 422.876417 1265.60742 NaN NaN NaN NaN NaN NaN NaN 45.289 1 40.334 39.834 40.834 -4.9549 0 0 0 0.92174 1 27774 27774 6.2344 1.1868 1 30564 58 19959 20367 36405 36405 -0.014757655508901735 LAEDIAALY 9 Unmodified _LAEDIAALY_ 0 0 0 REV__ENSG00000143570|ENST00000356205|SLC39A1 REV__ENSG00000143570|ENST00000356205|SLC39A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2632751464844 2 489.760758 977.506963 0.54259 0.00026574 -0.58269 -0.00028538 -0.040108 -1.9643E-05 489.76058860286736 50.889 0.30592 50.889 50.744 51.05 0 37 18 3 0 0 0 0.12841 1 28037 28037 30.225 0 1 5611900 + 30565 20655 19960 20368 36406 36406 0.017309454577457473 LAEDIAALY 9 Unmodified _LAEDIAALY_ 0 0 0 REV__ENSG00000143570|ENST00000356205|SLC39A1 REV__ENSG00000143570|ENST00000356205|SLC39A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2632751464844 2 489.760758 977.506963 0.54259 0.00026574 -0.58269 -0.00028538 -0.040108 -1.9643E-05 489.76058860286736 50.889 0.30592 50.889 50.744 51.05 0 37 18 3 0 0 0 0.097209 1 28037 28037 30.225 0 1 5611900 + 30566 20655 19960 20368 36407 36407 0.017309454577457473 LAEDIAALY 9 Unmodified _LAEDIAALY_ 0 0 0 REV__ENSG00000143570|ENST00000356205|SLC39A1 REV__ENSG00000143570|ENST00000356205|SLC39A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7619323730469 2 489.760758 977.506963 1.4367 0.00070364 -1.815 -0.00088893 -0.37833 -0.00018529 489.76041799516173 58.862 0.3878 52.787 52.565 52.953 -6.0745 35 21 2 0 0 0 0.087258 1 37801 37801 36.044 1.9418 1 15442000 + 30567 20655 19960 20368 36408 36408 0.017309454577457473 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2224426269531 2 444.221465 886.428378 0.23263 0.00010334 0.85207 0.00037851 1.0847 0.00048185 444.22180546660246 46.912 0.75314 46.912 46.718 47.471 0 100 35 4 0 0 0 0.57045 2 25597 25597;25712 28.487 1.4018 1 218850000 + 30568 24422 19961 20369 36409;36410 36409 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2220458984375 2 444.221465 886.428378 0.6277 0.00027884 1.129 0.00050154 1.7567 0.00078037 444.2218767965445 47.14 0.3146 46.803 46.681 46.996 -0.33664 42 15 4 0 0 0 0.63229 1 25334 25334 23.148 5.0134 1 24988000 + 30569 24422 19961 20369 36411 36411 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2203063964844 2 444.221465 886.428378 1.5713 0.000698 -0.49569 -0.0002202 1.0756 0.00047781 444.2211885324945 46.857 0.24371 46.823 46.712 46.956 -0.033417 17 11 2 0 0 0 0.6895 1 25221 25221 18.135 1.1927 1 3072000 + 30570 24422 19961 20369 36412 36412 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MSMS AL20221201_MKP_PDAC_01 4 444.2226257324219 2 444.221465 886.428378 NaN NaN NaN NaN NaN NaN NaN 72.265 1 66.089 65.589 66.589 -6.1757 0 0 0 0.90769 1 47285 47285 18.135 0 1 + 30571 24422 19961 20369 36413 36413 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.221465 886.428378 0.23263 0.00010334 0.85207 0.00037851 1.0847 0.00048185 444.22180546660246 46.912 0.75314 46.912 46.718 47.471 0 0.066003 -3.3462E-05 NaN 28.487 100 35 4 NaN NaN NaN NaN 0 NaN NaN 0 218850000 + 30572 24422 19961 20369 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.221465 886.428378 0.6277 0.00027884 1.129 0.00050154 1.7567 0.00078037 444.2218767965445 47.14 0.3146 46.803 46.681 46.996 -0.33664 -0.042992 0.0002126 NaN 28.487 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 24988000 + 30573 24422 19961 20369 -0.019379068473313055 LAEDLPET 8 Unmodified _LAEDLPET_ 0 0 0 REV__ENSG00000235961|ENST00000421798|PNMA6A REV__ENSG00000235961|ENST00000421798|PNMA6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 444.221465 886.428378 1.5713 0.000698 -0.49569 -0.0002202 1.0756 0.00047781 444.2211885324945 46.857 0.24371 46.823 46.712 46.956 -0.033417 -0.023011 -0.0012309 NaN 28.487 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3072000 + 30574 24422 19961 20369 -0.019379068473313055 LAEEKAAVL 9 Unmodified _LAEEKAAVL_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.27587890625 2 472.276575 942.538597 -0.41755 -0.0001972 0.53193 0.00025122 0.11438 5.4021E-05 472.2768756763174 34.235 0.2418 34.235 34.123 34.365 0 32 12 4 0 0 0 0.0086209 1 17993 17993 89.401 7.7876 1 15059000 30575 2308 19962 20370 36414 36414 0.06502938211713172 LAEFGHSVQ 9 Unmodified _LAEFGHSVQ_ 0 0 0 ENST00000392185.7_2_6:158349714-158356999:+|nuORF ENST00000392185.7_2_6:158349714-158356999:+|nuORF ENST00000392185.7_2_6:158349714-158356999:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.282470703125 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 26.407 1 26.433 25.933 26.933 0.026951 0 0 0 0.6557 1 13696 13696 10.824 0 1 30576 12666 19963 20371 36415 36415 -0.011636896249456186 LAEGGALTWPD 11 Unmodified _LAEGGALTWPD_ 0 0 0 REV__ENST00000314686.9_1_3:40519470-40525181:+|nuORF REV__ENST00000314686.9_1_3:40519470-40525181:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2803955078125 2 565.279846 1128.54514 0.48242 0.0002727 0.38588 0.00021813 0.8683 0.00049083 565.2803184695213 58.079 0.37286 57.589 57.369 57.742 -0.48974 46 17 4 0 0 0 0.25654 1 31527 31527 29.082 6.3453 1 11305000 + 30577 23008 19964 20372 36416 36416 -0.013991686275858228 LAEGHPDP 8 Unmodified _LAEGHPDP_ 0 0 0 ENST00000532483.5_1_14:73572990-73578268:+|nuORF;ENST00000527449.1_1_14:73574437-73577964:+|nuORF;ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25 ENST00000532483.5_1_14:73572990-73578268:+|nuORF ENST00000532483.5_1_14:73572990-73578268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2001647949219 2 418.200867 834.387182 0.45228 0.00018915 -0.1554 -6.4986E-05 0.29689 0.00012416 418.2008501294424 45.983 0.29275 45.983 45.838 46.131 0 29 13 3 0 0 0 0.67481 2 25071 25071;25178 19.439 5.9311 1 8082700 30578 3461 19965 20373 36417;36418 36417 -0.036636230961448746 LAEGQPEKDT 10 Unmodified _LAEGQPEKDT_ 0 0 0 ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF ENST00000506566.1_1_4:130824308-130824734:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.181640625 3 363.180383 1086.51932 NaN NaN NaN NaN NaN NaN NaN 58.311 1 52.237 51.737 52.737 -6.0745 0 0 0 0.66191 1 37357 37357 12.228 0 1 30579 14526 19966 20374 36419 36419 -0.020480628698578585 LAEIEKDIY 9 Unmodified _LAEIEKDIY_ 0 0 0 REV__ENSG00000137573|ENST00000402687|SULF1 REV__ENSG00000137573|ENST00000402687|SULF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2925415039062 2 547.292422 1092.57029 0.094854 5.1913E-05 -0.45352 -0.00024821 -0.35867 -0.0001963 547.2920133280097 43.427 0.20288 43.427 43.323 43.526 0 13 9 2 0 0 0 0.32871 1 23610 23610 15.847 1.0089 1 4129200 + 30580 20251 19967 20375 36420 36420 0.0277088617501704 LAEIEKDIY 9 Unmodified _LAEIEKDIY_ 0 0 0 REV__ENSG00000137573|ENST00000402687|SULF1 REV__ENSG00000137573|ENST00000402687|SULF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 547.292422 1092.57029 0.094854 5.1913E-05 -0.45352 -0.00024821 -0.35867 -0.0001963 547.2920133280097 43.427 0.20288 43.427 43.323 43.526 0 0 0 NaN 15.847 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4129200 + 30581 20251 19967 20375 0.0277088617501704 LAEKIVNAE 9 Unmodified _LAEKIVNAE_ 0 0 0 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 REV__nc|ENSG00000111912|Q8NI08-7|NCOA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2741394042969 2 493.779482 985.544411 0.66373 0.00032774 3.3268 0.0016427 3.9905 0.0019704 493.7807897717121 61.979 0.44164 61.491 61.284 61.726 -0.48764 41 20 3 0 0 0 0.19205 1 33858 33858 14.838 0 1 1698400 + 30582 18779 19968 20376 36421 36421 0.05106036723384477 LAEKNRKD 8 Unmodified _LAEKNRKD_ 0 0 0 CON__P02535-1 CON__P02535-1 CON__P02535-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2752990722656 2 487.274898 972.535243 1.3109 0.00063876 1.3672 0.00066618 2.678 0.0013049 487.275303060925 90.844 0.52954 84.669 84.324 84.854 -6.1757 56 31 2 0 0 0 0.44629 1 60033 60033 39.957 3.8303 1 15829000 + 30583 158 19969 20377 36422 36422 0.04787688157705361 LAELEGEML 9 Unmodified _LAELEGEML_ 0 0 0 REV__nc|ENSG00000118557|Q8TBY8-4|PMFBP1 REV__nc|ENSG00000118557|Q8TBY8-4|PMFBP1 MSMS AL20221201_MKP_PDAC_01 4 502.7511596679688 2 502.752075 1003.4896 NaN NaN NaN NaN NaN NaN NaN 79.365 1 73.189 72.689 73.689 -6.1757 0 0 0 0.46757 1 51999 51999 16.942 2.104 1 + 30584 19159 19970 20378 36423 36423 -0.012007181395460975 LAENGAMR 8 Unmodified _LAENGAMR_ 0 0 0 REV__nc|ENSG00000148426|Q86WR7-2|PROSER2 REV__nc|ENSG00000148426|Q86WR7-2|PROSER2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881225585938 2 431.215995 860.417436 -0.49975 -0.0002155 0.57866 0.00024953 0.078905 3.4025E-05 431.2145282373017 34.683 0.458 34.683 34.442 34.9 0 56 23 3 0 0 0 8.7369 1 18294 18294 16.942 0 1 3190800 + 30585 20952 19971 20379 36424 36424 -0.018355877026010603 LAENYILALA 10 Unmodified _LAENYILALA_ 0 0 0 REV__ENSG00000197956|ENST00000368719|S100A6 REV__ENSG00000197956|ENST00000368719|S100A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.8115234375 2 545.810782 1089.60701 0.58088 0.00031705 1.3618 0.00074326 1.9426 0.0010603 545.811377423129 81.423 0.46632 80.931 80.7 81.166 -0.49247 82 20 5 0 0 0 0.39689 1 44630 44630 31.268 2.7815 1 15161000 + 30586 23973 19972 20380 36425 36425 0.0657918279155183 LAEPLQPPG 9 Unmodified _LAEPLQPPG_ 0 0 0 REV__nc|ENSG00000101400|Q13424-2|SNTA1 REV__nc|ENSG00000101400|Q13424-2|SNTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2559509277344 2 461.255643 920.496732 0.77013 0.00035522 -0.49655 -0.00022904 0.27357 0.00012619 461.2552956284061 67.23 0.257 67.23 67.085 67.342 0 16 10 2 0 0 0 0.55144 1 37482 37482 4.3292 0.38484 1 561660 + 30587 18168 19973 20381 36426 36426 0.03330382523188291 LAEQAEQY 8 Unmodified _LAEQAEQY_ 0 0 0 ENST00000453697.1_1_7:63894215-63894284:+|nuORF;ENST00000440317.1_1_2:127315208-127315727:-|nuORF ENST00000453697.1_1_7:63894215-63894284:+|nuORF ENST00000453697.1_1_7:63894215-63894284:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.4436645507812 1 951.441802 950.434526 -0.30244 -0.00028776 -0.062259 -5.9235E-05 -0.3647 -0.00034699 951.4416837224425 58.801 0.248 58.801 58.654 58.902 0 20 10 2 0 0 0 0.46494 1 32696 32696 38.151 11.268 1 2802000 30588 13385 19974 20382 36427 36427 -0.04267388615812706 LAEQRKRQ 8 Unmodified _LAEQRKRQ_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2255859375 2 514.801614 1027.58868 0.43883 0.00022591 1.8001 0.00092672 2.239 0.0011526 514.8024117744022 52.479 0.27179 52.045 51.925 52.197 -0.43367 30 13 3 0 0 0 0.80143 1 28341 28341 5.7604 0 1 7047200 + 30589 20685 19975 20383 36428 36428 0.0759848566024175 LAESATLAV 9 Unmodified _LAESATLAV_ 0 0 0 REV__ENSG00000176401|ENST00000326282|EID2B REV__ENSG00000176401|ENST00000326282|EID2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.4893188476562 1 874.488024 873.480748 1.454 0.0012715 0.28586 0.00024998 1.7399 0.0015215 874.4881115455702 64.251 0.41338 58.076 57.918 58.331 -6.1757 34 21 2 0 0 0 0.0086179 1 41700 41700 89.427 0 1 14850000 + 30590 22928 19976 20384 36429 36429 0.03894676286279264 LAETEGRY 8 Unmodified _LAETEGRY_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7319641113281 2 469.732532 937.45051 NaN NaN NaN NaN NaN NaN NaN 20.212 1 20.212 19.712 20.712 0 0 0 0 0.92941 1 10158 10158 14.838 1.3304 1 + 30591 169;158 19977 20385 36430 36430 -0.02071682378903006 LAEVADTKC 9 Unmodified _LAEVADTKC_ 0 0 0 REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2371520996094 2 475.236593 948.458632 0.65466 0.00031112 3.9668 0.0018852 4.6215 0.0021963 475.2363921197305 57.816 0.36495 51.788 51.592 51.957 -6.0275 34 20 2 0 0 0 0.2001 1 36926 36926 23.148 1.4018 1 34798000 + 30592 20680 19978 20386 36431 36431 -0.017658714537901687 LAEWLFSE 8 Unmodified _LAEWLFSE_ 0 0 0 ENST00000299977.8_1_17:33592558-33592624:+|nuORF ENST00000299977.8_1_17:33592558-33592624:+|nuORF ENST00000299977.8_1_17:33592558-33592624:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.739501953125 2 497.74765 993.480748 1.0494 0.00052234 -0.91266 -0.00045427 0.13676 6.8072E-05 497.74671939059795 72.294 0.58249 66.119 65.83 66.412 -6.1757 68 29 3 0 0 0 0.67481 1 47168 47168 19.439 6.9074 1 45672000 30593 11547 19979 20387 36432 36432 -0.016253237137220822 LAFCCWGLAL 10 Unmodified _LAFCCWGLAL_ 0 0 0 ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-4|SVEP1;nc|ENSG00000165124|Q4LDE5-2|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2887573242188 2 548.769548 1095.52454 1.0717 0.00058809 -0.24756 -0.00013585 0.8241 0.00045224 548.7692833782518 81.334 0.466 75.158 74.961 75.427 -6.1757 46 26 2 0 0 0 0.23489 1 53315 53315 7.9102 7.9102 1 16528000 30594 7297 19980 20388 36433 36433 -0.019397538125986102 LAFEEFEL 8 Unmodified _LAFEEFEL_ 0 0 0 nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1 nc|ENSG00000183117|Q96PZ7-4|CSMD1 nc|ENSG00000183117|Q96PZ7-4|CSMD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2483825683594 2 499.247483 996.480414 NaN NaN NaN NaN NaN NaN NaN 71.328 1 71.328 70.828 71.828 0 0 0 0 0.88073 1 39732 39732 19.439 1.304 1 30595 9120 19981 20389 36434 36434 -0.017967434335673715 LAFELFAEE 9 Unmodified _LAFELFAEE_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7644653320312 2 534.76604 1067.51753 0.28465 0.00015222 -2.2175 -0.0011858 -1.9329 -0.0010336 534.7647800153403 83.721 0.29687 83.721 83.543 83.84 0 22 15 2 0 0 0 0.41742 1 46390 46390 11.64 0.81637 1 480850 30596 8595 19982 20390 36435 36435 -0.013530718877973413 LAFFIAFIY 9 Unmodified _LAFFIAFIY_ 0 0 0 REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8748474121094 3 368.875795 1103.60555 0.86298 0.00031833 -2.6834 -0.00098986 -1.8205 -0.00067152 368.87470823895535 41.292 0.20481 36.684 36.583 36.788 -4.6079 16 12 2 0 0 0 0.46577 1 24822 24822 5.7319 0.43497 1 6068200 + 30597 27815 19983 20391 36436 36436 0.05789593493477696 LAFFIAFIY 9 Unmodified _LAFFIAFIY_ 0 0 0 REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 368.875795 1103.60555 0.86298 0.00031833 -2.6834 -0.00098986 -1.8205 -0.00067152 368.87470823895535 41.292 0.20481 36.684 36.583 36.788 -4.6079 -0.084473 -0.00039056 NaN 5.7319 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6068200 + 30598 27815 19983 20391 0.05789593493477696 LAFHNPSL 8 Unmodified _LAFHNPSL_ 0 0 0 ENST00000550585.5_1_12:53854847-53856295:+|nuORF ENST00000550585.5_1_12:53854847-53856295:+|nuORF ENST00000550585.5_1_12:53854847-53856295:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7428588867188 2 449.742702 897.470852 0.63414 0.0002852 -0.52678 -0.00023692 0.10736 4.8283E-05 449.74205264810206 38.406 0.24621 38.406 38.352 38.598 0 21 15 2 0 0 0 0.61462 1 20537 20537 24.674 3.8027 1 2287800 30599 15165 19984 20392 36437 36437 0.018015330715684286 LAFHQRIS 8 Unmodified _LAFHQRIS_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2747192382812 2 486.274701 970.534849 0.24881 0.00012099 0.34114 0.00016589 0.58996 0.00028688 486.2744677695164 85.343 0.24222 85.343 85.242 85.484 0 12 9 2 0 0 0 0.80975 1 47290 47290 0.79363 0 1 242050 30600 2559 19985 20393 36438 36438 0.04840313228521609 LAFLTVAYI 9 Unmodified _LAFLTVAYI_ 0 0 0 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 ENSG00000257594|ENST00000529983|GALNT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2643127441406 2 505.799686 1009.58482 0.42775 0.00021635 -3.5743 -0.0018079 -3.1466 -0.0015915 506.2976508923021 74.129 0.29175 74.173 74.028 74.319 0.043983 26 12 3 0 0 0 0.203 1 40856 40856 9.3474 0 1 1482800 30601 10812 19986 20394 36439 36439 0.080410031138058 LAFQCTSLKAL 11 Unmodified _LAFQCTSLKAL_ 0 0 0 REV__ENST00000526769.3_1_11:6735844-6741409:-|nuORF REV__ENST00000526769.3_1_11:6735844-6741409:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8905944824219 3 398.889886 1193.64783 -0.0044814 -1.7876E-06 2.423 0.00096651 2.4185 0.00096472 398.8907732418693 28.425 0.25789 28.454 28.262 28.52 0.029564 17 10 2 0 0 0 0.66428 1 14806 14806 3.8459 0 1 2663900 + 30602 28378 19987 20395 36440 36440 0.05875200839545869 LAFVFKDWIK 10 Unmodified _LAFVFKDWIK_ 0 0 0 ENSG00000168785|ENST00000305798|TSPAN5 ENSG00000168785|ENST00000305798|TSPAN5 ENSG00000168785|ENST00000305798|TSPAN5 MSMS AL20221201_MKP_PDAC_01 4 633.8624877929688 2 633.865892 1265.71723 NaN NaN NaN NaN NaN NaN NaN 86.936 1 80.761 80.261 81.261 -6.1757 0 0 0 0.087592 1 57312 57312 52.268 12.319 1 30603 7799 19988 20396 36441 36441 0.09500027850594961 LAFWDFGPL 9 Unmodified _LAFWDFGPL_ 0 0 0 REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8507995605469 3 355.851649 1064.53312 1.2154 0.0004325 -2.59 -0.00092166 -1.3746 -0.00048916 355.8504673666685 38.799 0.36096 34.348 34.191 34.552 -4.4509 32 22 2 0 0 0 0.37804 1 23013 23013 8.7454 1.1365 1 10860000 + 30604 26868 19989 20397 36442 36442 0.0034325941990118736 LAFWDFGPL 9 Unmodified _LAFWDFGPL_ 0 0 0 REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.851649 1064.53312 -0.57765 -0.00020556 -3.7018 -0.0013173 -4.2794 -0.0015228 356.18450626593346 34.607 0.21713 34.607 34.478 34.695 0 0.12922 -0.00083027 NaN 8.7454 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1001300 + 30605 26868 19989 20397 0.0034325941990118736 LAFWDFGPL 9 Unmodified _LAFWDFGPL_ 0 0 0 REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF REV__ENST00000423354.1_1_2:43459915-43460462:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 355.851649 1064.53312 1.2154 0.0004325 -2.59 -0.00092166 -1.3746 -0.00048916 355.8504673666685 38.799 0.36096 34.348 34.191 34.552 -4.4509 -0.12922 0.00035656 NaN 8.7454 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 10860000 + 30606 26868 19989 20397 0.0034325941990118736 LAGAEGPLTF 10 Unmodified _LAGAEGPLTF_ 0 0 0 ENST00000251822.6_1_8:22857446-22857548:+|nuORF ENST00000251822.6_1_8:22857446-22857548:+|nuORF ENST00000251822.6_1_8:22857446-22857548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2609252929688 2 488.260925 974.507297 -0.26497 -0.00012937 1.9066 0.00093094 1.6417 0.00080156 488.2620285816376 77.192 0.26744 76.71 76.517 76.784 -0.4826 19 11 2 0 0 0 0.62068 1 42228 42228 10.074 0.6908 1 1557600 30607 11146 19990 20398 36443 36443 0.019023651776251427 LAGAGVLVY 9 Unmodified _LAGAGVLVY_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 862.5032958984375 1 862.503281 861.496004 0.50845 0.00043854 0.044049 3.7992E-05 0.5525 0.00047653 862.5031378356676 80.667 0.75757 74.492 74.204 74.961 -6.1757 84 41 3 0 0 0 0.085487 2 52893 52893;53132 36.466 2.2788 1 50942000 + 30608 19957 19991 20399 36444;36445 36444 0.059715878741258166 LAGANERM 8 Unmodified _LAGANERM_ 0 0 0 REV__ENSG00000239306|ENST00000310137|RBM14;REV__nc|ENSG00000239306|Q96PK6-5|RBM14 REV__ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.2143249511719 2 431.215995 860.417436 -0.49975 -0.0002155 0.57866 0.00024953 0.078905 3.4025E-05 431.2145282373017 34.683 0.458 34.683 34.442 34.9 0 56 23 3 0 0 0 0.57045 1 18246 18246 28.487 0 1 3190800 30609 24437;29961 19992 20400 36446 36446 -0.018355877026010603 LAGDDSFSGW 10 Unmodified _LAGDDSFSGW_ 0 0 0 REV__ENSG00000160883|ENST00000292432|HK3 REV__ENSG00000160883|ENST00000292432|HK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.756591796875 2 527.727446 1053.44034 0.34655 0.00018289 3.9272 0.0020725 4.2738 0.0022554 527.7288549532565 91.288 0.089951 90.793 90.734 90.824 -0.49457 5 3 2 0 0 0 0.23862 1 49879 49879 3.9444 1.0552 1 243600 + 30610 21572 19993 20401 36447 36447 -0.08424290104107968 LAGFVRAG 8 Unmodified _LAGFVRAG_ 0 0 0 REV__ENSG00000104960|ENST00000391842|PTOV1 REV__ENSG00000104960|ENST00000391842|PTOV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.8797607421875 2 395.732138 789.449723 1.3733 0.00054345 0.35185 0.00013924 1.7251 0.00068269 395.7321405502918 47.844 0.52209 42.611 42.348 42.87 -5.2339 80 31 3 0 0 0 8.7369 1 29569 29569 5.2307 0 1 80151000 + 30611 18393 19994 20402 36448 36448 0.04657567762706094 LAGGFAWTFAF 11 Unmodified _LAGGFAWTFAF_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.296630859375 2 594.297842 1186.58113 0.36332 0.00021592 -1.2123 -0.00072049 -0.84902 -0.00050457 594.2970717452712 62.182 0.78256 56.006 55.803 56.586 -6.1757 87 42 3 0 0 0 0.44389 1 40146 40146 19.257 2.3147 1 75965000 + 30612 23527 19995 20403 36449 36449 -0.0046966666006937885 LAGGIWPV 8 Unmodified _LAGGIWPV_ 0 0 0 ENST00000296805.7_1_5:74062891-74062987:-|nuORF ENST00000296805.7_1_5:74062891-74062987:-|nuORF ENST00000296805.7_1_5:74062891-74062987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7370910644531 2 406.736889 811.459225 0.94942 0.00038617 0.26842 0.00010918 1.2178 0.00049534 406.73683515968514 80.209 0.45528 79.72 79.428 79.884 -0.48932 27 17 2 0 0 0 0.70131 1 43890 43890 17.087 5.9721 1 891210 30613 11516 19996 20404 36450 36450 0.045953360482258176 LAGGRYYV 8 Unmodified _LAGGRYYV_ 0 0 0 REV__ENSG00000147475|ENST00000519638|ERLIN2 REV__ENSG00000147475|ENST00000519638|ERLIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7426452636719 2 449.742702 897.470852 0.98645 0.00044365 0.44307 0.00019927 1.4295 0.00064292 449.7427289035075 42.94 0.35892 38.255 38.055 38.414 -4.6846 54 22 3 0 0 0 0.65867 1 26083 26083 20.871 0 1 32799000 + 30614 20892 19997 20405 36451 36451 0.0180153307155706 LAGGSPPQPVL 11 Unmodified _LAGGSPPQPVL_ 0 0 0 ENST00000422734.1_1_10:24446874-24447108:+|nuORF ENST00000422734.1_1_10:24446874-24447108:+|nuORF ENST00000422734.1_1_10:24446874-24447108:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.29638671875 2 518.295299 1034.57605 0.65899 0.00034155 0.2935 0.00015212 0.9525 0.00049367 518.2955145713971 49.405 0.25906 49.405 49.277 49.536 0 16 11 2 0 0 0 0.35243 1 27211 27211 24.021 5.8856 1 2061600 30615 13120 19998 20406 36452 36452 0.060140294773418645 LAGHAVKI 8 Unmodified _LAGHAVKI_ 0 0 0 REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2532348632812 2 404.755613 807.496673 -0.41687 -0.00016873 0.72001 0.00029143 0.30314 0.0001227 404.755827942787 37.069 0.379 37.091 36.816 37.195 0.021542 23 17 2 0 0 0 8.7369 1 19706 19706 2.5775 0 1 2819800 + 30616 21532 19999 20407 36453 36453 0.08522427313857861 LAGHFRNYSDT 11 Unmodified _LAGHFRNYSDT_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.5376586914062 3 427.538793 1279.59455 NaN NaN NaN NaN NaN NaN NaN 14.312 1 14.312 13.812 14.812 0 0 0 0 0.94144 1 6794 6794 0.50596 0.09769 1 30617 7249 20000 20408 36454 36454 -0.03406460618771234 LAGKGRLHL 9 Unmodified _LAGKGRLHL_ 0 0 0 REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2792053222656 2 482.806168 963.597784 0.83654 0.00040389 0.31134 0.00015032 1.1479 0.0005542 482.80573209291805 57.185 0.30213 57.119 56.937 57.239 -0.066036 22 14 2 0 0 0 0.19613 1 31134 31134 12.532 0.89125 1 3054100 + 30618 18383 20001 20409 36455 36455 0.11452879016553652 LAGKIAFCRL 10 Unmodified _LAGKIAFCRL_ 0 0 0 ENST00000342056.6_1_6:73815023-73821089:+|nuORF ENST00000342056.6_1_6:73815023-73821089:+|nuORF ENST00000342056.6_1_6:73815023-73821089:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2982177734375 2 546.323337 1090.63212 1.3752 0.00075131 2.5366 0.0013858 3.9118 0.0021371 546.3247400615522 98.362 0.14875 92.186 92.072 92.221 -6.1757 13 9 2 0 0 0 0.18565 1 65227 65227 26.884 14.352 1 8923600 30619 11977 20002 20410 36456 36456 0.09042959113139659 LAGLAESPP 9 Unmodified _LAGLAESPP_ 0 0 0 ENST00000595335.5_1_19:57874916-57879933:+|nuORF ENST00000595335.5_1_19:57874916-57879933:+|nuORF ENST00000595335.5_1_19:57874916-57879933:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.461181640625 1 854.46181 853.454533 0.053653 4.5845E-05 0.080153 6.8488E-05 0.13381 0.00011433 854.4617613687335 89.345 0.28448 89.345 89.186 89.471 0 19 13 2 0 0 0 0.2143 1 49401 49401 21.747 2.4897 1 629580 30620 15756 20003 20411 36457 36457 0.021944071148027433 LAGLITGEQL 10 Unmodified _LAGLITGEQL_ 0 0 0 ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF ENST00000590639.1_1_17:42152067-42152649:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7960510253906 2 507.795132 1013.57571 NaN NaN NaN NaN NaN NaN NaN 75.49 1 75.013 74.513 75.513 -0.47714 0 0 0 0.90096 1 41325 41325 7.9102 0 1 30621 15689 20004 20412 36458 36458 0.06946609757483202 LAGQATTAY 9 Unmodified _LAGQATTAY_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 895.4517822265625 1 895.451973 894.444697 -0.70834 -0.00063429 3.4027 0.0030469 2.6943 0.0024126 895.4553379430009 27.6 0.27229 27.6 27.449 27.721 0 21 12 2 0 0 0 0.024882 1 14194 14194 58.679 18.721 1 3714300 30622 517 20005 20413 36459 36459 -0.0067478089058568 LAGQATTAY 9 Unmodified _LAGQATTAY_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2282409667969 2 448.229625 894.444697 -0.39273 -0.00017603 -0.2858 -0.00012811 -0.67853 -0.00030414 448.22930576559224 27.59 0.21258 27.59 27.488 27.7 0 16 9 2 0 0 0 0.18465 1 14220 14220 24.674 14.49 1 2349000 30623 517 20005 20413 36460 36460 -0.0067478089058568 LAGQATTAY 9 Unmodified _LAGQATTAY_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2298278808594 2 448.229625 894.444697 1.1739 0.00052618 0.41938 0.00018798 1.5933 0.00071416 448.2296630989386 32.402 0.39284 28.545 28.383 28.776 -3.8562 36 21 2 0 0 0 0.14602 1 18441 18441 28.487 11.545 1 11025000 30624 517 20005 20413 36461 36461 -0.0067478089058568 LAGQENKGRE 10 Unmodified _LAGQENKGRE_ 0 0 0 REV__ENST00000481580.1_1_20:32665186-32665252:+|nuORF REV__ENST00000481580.1_1_20:32665186-32665252:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2825927734375 2 551.285994 1100.55744 -0.07705 -4.2476E-05 -4.4633 -0.0024605 -4.5403 -0.002503 551.2825262623542 61.409 0.27491 60.92 60.756 61.031 -0.48932 27 12 3 0 0 0 0.40136 1 33426 33426 21.537 3.402 1 3166100 + 30625 27697 20006 20414 36462 36462 0.011178678354781368 LAGQFVPV 8 Unmodified _LAGQFVPV_ 0 0 0 REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 830.4775390625 1 830.477066 829.469789 0.46959 0.00038998 1.1064 0.0009188 1.5759 0.0013088 830.4780037031745 80.204 0.35091 79.714 79.533 79.884 -0.48932 30 13 3 0 0 0 0.65867 1 43970 43970 20.871 0 1 1871200 + 30626 28037 20007 20415 36463 36463 0.04823318702665347 LAGQFVPV 8 Unmodified _LAGQFVPV_ 0 0 0 REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.7425842285156 2 415.742171 829.469789 0.93518 0.00038879 0.39212 0.00016302 1.3273 0.00055181 415.7422630359689 80.234 0.40297 79.744 79.507 79.91 -0.48932 34 15 3 0 0 0 0.71616 1 43987 43987 15.768 0 1 1808800 + 30627 28037 20007 20415 36464 36464 0.04823318702665347 LAGQFVPV 8 Unmodified _LAGQFVPV_ 0 0 0 REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 415.742171 829.469789 0.073166 3.0418E-05 1.73 0.00071921 1.8031 0.00074963 415.7428188949384 79.661 0.27126 79.716 79.523 79.795 0.054977 -0.013946 0.00093476 NaN 15.768 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 857940 + 30628 28037 20007 20415 0.04823318702665347 LAGTQDSEIF 10 Unmodified _LAGTQDSEIF_ 0 0 0 nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3157348632812 2 540.764029 1079.5135 0.3013 0.00016293 -2.0614 -0.0011147 -1.7601 -0.0009518 540.7630574904244 74.082 0.25142 74.126 74.006 74.258 0.043976 13 10 2 0 0 0 0.23489 1 40867 40867 7.9102 0 1 684190 30629 10499 20008 20416 36465 36465 -0.023071613815318415 LAGYFQVIYPC 11 Unmodified _LAGYFQVIYPC_ 0 0 0 REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.5480651855469 3 425.21437 1272.62128 -0.26316 -0.0001119 -1.0339 -0.00043963 -1.2971 -0.00055153 425.21497068791047 33.524 0.42634 33.364 33.223 33.649 -0.15919 35 17 4 0 0 0 0.70701 1 17527 17527 1.4551 0.12547 1 1832400 + 30630 17381 20009 20417 36466 36466 -0.004124880517565543 LAHAGVAL 8 Unmodified _LAHAGVAL_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.22802734375 2 376.226688 750.438824 1.3912 0.00052341 -1.1992 -0.00045118 0.192 7.2234E-05 376.22636852810217 34.693 0.29525 30.598 30.457 30.752 -4.0951 40 17 3 0 0 0 0.80624 1 19934 19934 2.8892 0 1 7893100 30631 325 20010 20418 36467 36467 0.053621653884079024 LAHCAGERLRY 11 Unmodified _LAHCAGERLRY_ 0 0 0 REV__ENSG00000143303|ENST00000368216|METTL25B REV__ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2242736816406 3 430.224151 1287.65062 0.14658 6.3063E-05 -0.49736 -0.00021397 -0.35078 -0.00015091 430.2239875689426 76.841 0.28021 76.841 76.637 76.917 0 21 12 2 0 0 0 0.68427 1 42733 42733 2.6312 1.3016 1 1940800 + 30632 20620 20011 20419 36468 36468 0.018304690170452886 LAHETPPT 8 Unmodified _LAHETPPT_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.4454956054688 1 865.441409 864.434132 0.66429 0.00057491 -0.54174 -0.00046885 0.12255 0.00010606 865.442255539465 46.043 0.20997 46.043 45.939 46.149 0 12 9 2 0 0 0 0.57045 1 25125 25125 28.487 2.1456 1 1130800 30633 748 20012 20420 36469 36469 -0.0035076354499778972 LAHEVGWKY 9 Unmodified _LAHEVGWKY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.194580078125 3 368.194186 1101.56073 -0.27544 -0.00010142 0.33887 0.00012477 0.063427 2.3354E-05 368.19433636668174 34.518 0.21349 34.327 34.226 34.44 -0.19132 18 9 3 0 0 0 0.12357 1 18033 18033 30.703 19.88 1 5623400 30634 5424 20013 20421 36470 36470 0.014011626801448074 LAHEVGWKY 9 Unmodified _LAHEVGWKY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1944885253906 3 368.194186 1101.56073 1.4784 0.00054434 -1.2059 -0.000444 0.27252 0.00010034 368.1940499665948 38.201 0.49291 33.832 33.565 34.058 -4.3689 98 29 5 0 0 0 0.12357 2 22468 22468;22607 30.703 30.703 1 58386000 30635 5424 20013 20421 36471;36472 36471 0.014011626801448074 LAHEVGWKY 9 Unmodified _LAHEVGWKY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MSMS AL20221201_MKP_PDAC_01 4 551.7865600585938 2 551.787641 1101.56073 NaN NaN NaN NaN NaN NaN NaN 38.206 1 33.837 33.337 34.337 -4.3689 0 0 0 0.046779 1 22506 22506 63.961 49.379 1 30636 5424 20013 20421 36473 36473 0.014011626801448074 LAHEVGWKY 9 Unmodified _LAHEVGWKY_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF;ENST00000478813.1_1_8:81177882-81177960:-|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 368.194186 1101.56073 0.087354 3.2163E-05 0.068178 2.5103E-05 0.15553 5.7266E-05 368.194214973214 34.253 0.20781 34.28 34.184 34.391 0.027401 -0.023263 -0.00024592 NaN 30.703 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1410200 30637 5424 20013 20421 0.014011626801448074 LAHFHYML 8 Unmodified _LAHFHYML_ 0 0 0 ENST00000519868.1_1_5:169506158-169506347:+|nuORF ENST00000519868.1_1_5:169506158-169506347:+|nuORF ENST00000519868.1_1_5:169506158-169506347:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.25830078125 2 516.260205 1030.50586 NaN NaN NaN NaN NaN NaN NaN 79.799 1 79.799 79.299 80.299 0 0 0 0 0.9706 1 44318 44318 6.3541 0 1 30638 14717 20014 20422 36474 36474 -0.008175473921255616 LAHHFLALG 9 Unmodified _LAHHFLALG_ 0 0 0 nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ENSG00000143199|ENST00000367851|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 nc|ENSG00000143199|Q96PN6-4|ADCY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7808227539062 2 489.779619 977.544686 0.64766 0.00031721 0.25829 0.0001265 0.90594 0.00044371 489.77975042099496 86.104 0.27716 85.601 85.444 85.722 -0.50318 18 10 2 0 0 0 0.46577 1 47094 47094 9.3474 9.3474 1 558810 30639 5477 20015 20423 36475 36475 0.05501501233879935 LAHHQRRPC 9 Unmodified _LAHHQRRPC_ 0 0 0 REV__ENST00000375661.5_1_6:31773857-31774592:-|nuORF REV__ENST00000375661.5_1_6:31773857-31774592:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.8636169433594 3 373.198048 1116.57231 0.51259 0.0001913 -2.2483 -0.00083905 -1.7357 -0.00064775 373.19721996326217 36.434 0.11676 36.434 36.35 36.467 0 8 5 2 0 0 0 0.21404 1 19335 19335 2.7352 0 1 1466800 + 30640 26208 20016 20424 36476 36476 0.01869081222503155 LAHIFRGTF 9 Unmodified _LAHIFRGTF_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA;ENST00000376986.5_1_9:74764457-74810425:+|nuORF ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.2750854492188 2 531.298176 1060.5818 1.3201 0.00070135 1.5433 0.00081993 2.8633 0.0015213 531.2989283132962 95.754 0.44855 89.579 89.496 89.944 -6.1757 35 27 2 0 0 0 0.17666 1 63510 63510 8.5933 0 1 9356700 30641 3413 20017 20425 36477 36477 0.05393172779645283 LAHIYTELQL 10 Unmodified _LAHIYTELQL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8930053710938 3 400.892284 1199.65502 0.92649 0.00037142 0.073467 2.9452E-05 0.99996 0.00040087 400.89249459974343 18.831 0.46797 16.209 15.971 16.439 -2.6215 101 34 4 0 0 0 0.69377 1 9945 9945 1.7423 0 1 16979000 30642 1638 20018 20426 36478 36478 0.06318256711620052 LAHLLAAL 8 Unmodified _LAHLLAAL_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2660217285156 2 411.265813 820.517074 1.3327 0.00054811 -0.70893 -0.00029156 0.62382 0.00025656 411.2654942671363 96.09 0.14069 89.915 89.833 89.974 -6.1757 14 8 2 0 0 0 0.42709 1 63689 63689 41.817 0 1 6382400 + 30643 23834 20019 20427 36479 36479 0.09963597973637661 LAHPDTHA 8 Unmodified _LAHPDTHA_ 0 0 0 REV__ENST00000300131.7_1_12:57488507-57488825:+|nuORF REV__ENST00000300131.7_1_12:57488507-57488825:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2145385742188 2 431.214309 860.414065 0.58146 0.00025073 0.88955 0.00038359 1.471 0.00063432 431.21462644324953 38.757 0.3574 34.306 34.208 34.565 -4.4509 29 22 2 0 0 0 0.61462 1 22929 22929 24.674 3.8027 1 11220000 + 30644 25304 20020 20428 36480 36480 -0.021725144849710887 LAHQHVVGF 9 Unmodified _LAHQHVVGF_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2749938964844 2 504.274701 1006.53485 NaN NaN NaN NaN NaN NaN NaN 30.326 1 30.356 29.856 30.856 0.030106 0 0 0 0.6557 1 15853 15853 10.824 4.1008 1 30645 7539 20021 20429 36481 36481 0.031843132285303 LAHSFVTSF 9 Unmodified _LAHSFVTSF_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7589111328125 2 504.761092 1007.50763 -0.35784 -0.00018062 -1.007 -0.0005083 -1.3649 -0.00068893 504.76062298118836 54.779 0.25798 54.312 54.182 54.44 -0.46664 26 12 3 0 0 0 0.14602 1 29643 29643 28.487 14.979 1 6024900 30646 5884 20022 20430 36482 36482 0.004177848974791232 LAHSFVTSF 9 Unmodified _LAHSFVTSF_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.7597045898438 2 504.761092 1007.50763 0.17703 8.9358E-05 -0.82936 -0.00041863 -0.65233 -0.00032927 504.7605492795688 54.407 0.67767 54.34 53.786 54.463 -0.066936 65 33 3 0 0 0 0.010877 2 29475 29475;29577 77.984 31.063 1 31719000 30647 5884 20022 20430 36483;36484 36483 0.004177848974791232 LAHSFVTSF 9 Unmodified _LAHSFVTSF_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7611083984375 2 504.761092 1007.50763 0.96015 0.00048465 0.18037 9.1042E-05 1.1405 0.00057569 504.7611641946399 60.24 0.57499 54.126 53.87 54.445 -6.1147 72 29 3 0 0 0 0.0090851 2 38758 38758;38893 85.357 37.011 1 68786000 30648 5884 20022 20430 36485;36486 36485 0.004177848974791232 LAHWQIQPA 9 Unmodified _LAHWQIQPA_ 0 0 0 ENST00000424085.6_1_1:31405972-31406026:-|nuORF ENST00000424085.6_1_1:31405972-31406026:-|nuORF ENST00000424085.6_1_1:31405972-31406026:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1063.73681640625 1 1063.56834 1062.56106 0.32321 0.00034376 1.2727 0.0013536 1.5959 0.0016973 1063.5692981220436 55.453 0.10025 54.975 54.905 55.005 -0.47798 6 4 2 0 0 0 0.21798 1 30043 30043 2.3027 0.4585 1 1835400 30649 13139 20023 20431 36487 36487 0.03228582399992774 LAHWQIQPA 9 Unmodified _LAHWQIQPA_ 0 0 0 ENST00000424085.6_1_1:31405972-31406026:-|nuORF ENST00000424085.6_1_1:31405972-31406026:-|nuORF ENST00000424085.6_1_1:31405972-31406026:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1063.56834 1062.56106 0.67134 0.00071401 1.7309 0.001841 2.4023 0.002555 1064.5738970133302 55.027 0.081272 54.959 54.898 54.98 -0.068737 -0.0083074 0.00013085 NaN 2.3027 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1364000 30650 13139 20023 20431 0.03228582399992774 LAILFKAA 8 Unmodified _LAILFKAA_ 0 0 0 REV__ENST00000312251.7_1_16:5074987-5075392:-|nuORF REV__ENST00000312251.7_1_16:5074987-5075392:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.5443725585938 1 846.544751 845.537475 1.2534 0.001061 0.0088419 7.4851E-06 1.2622 0.0010685 846.544459469838 101.05 0.10836 94.879 94.815 94.923 -6.1757 7 5 2 0 0 0 0.5284 1 67736 67736 32.117 0 1 7924500 + 30651 25430 20024 20432 36488 36488 0.10852768633458254 LAIRVFLFK 9 Unmodified _LAIRVFLFK_ 0 0 0 REV__ENST00000373344.9_1_X:76940479-76944390:-|nuORF REV__ENST00000373344.9_1_X:76940479-76944390:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8589477539062 2 553.85787 1105.70119 NaN NaN NaN NaN NaN NaN NaN 104.22 1 104.17 103.67 104.67 -0.048737 0 0 0 0.86031 1 57864 57864 0.52476 0.52476 1 + 30652 26143 20025 20433 36489 36489 0.1525636640437824 LAISDALKA 9 Unmodified _LAISDALKA_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2716064453125 2 451.271293 900.528032 0.75757 0.00034187 -0.41754 -0.00018843 0.34002 0.00015344 451.2710892921599 50.893 0.18239 50.893 50.813 50.996 0 14 10 2 0 0 0 0.1773 1 28085 28085 25.399 0 1 2068300 + 30653 22981 20026 20434 36490 36490 0.07378955557271638 LAKAKGGG 8 Unmodified _LAKAKGGG_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.21875 2 351.218863 700.423173 NaN NaN NaN NaN NaN NaN NaN 1.0564 1 0.98311 0.48311 1.4831 -0.073289 0 0 0 0.97444 1 531 531 0.69038 0 1 + 30654 24317 20027 20435 36491 36491 0.06097878871389639 LAKALCYI 8 Carbamidomethyl (C) _LAKALC(Carbamidomethyl (C))YI_ LAKALC(1)YI LAKALC(40)YI 0 1 0 ENSG00000111358|ENST00000543341|GTF2H3;nc|ENSG00000111358|Q13889-2|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2741394042969 2 476.270238 950.525924 1.037 0.0004939 -0.67543 -0.00032169 0.36158 0.00017221 476.2700771766007 49.727 0.57526 49.678 49.471 50.046 -0.048824 52 28 2 0 0 0 0.44122 1 26996 26996 40.449 10.224 1 9708400 30655 2785 20028 20436 36492 36492 289 0.04868203547835037 LAKEEAMIL 9 Unmodified _LAKEEAMIL_ 0 0 0 REV__nc|ENSG00000138029|P55084-2|HADHB REV__nc|ENSG00000138029|P55084-2|HADHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.28466796875 2 509.286085 1016.55762 0.42637 0.00021714 -0.65695 -0.00033457 -0.23058 -0.00011743 509.2859038371738 73.301 0.30026 72.825 72.651 72.952 -0.47588 31 13 3 0 0 0 0.28047 1 40184 40184 18.135 0 1 2881700 + 30656 20291 20029 20437 36493 36493 0.050001515111148365 LAKHPPPF 8 Unmodified _LAKHPPPF_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.7625122070312 2 453.763438 905.512323 0.23572 0.00010696 -1.401 -0.00063574 -1.1653 -0.00052878 453.7627548420283 35.71 0.3056 35.735 35.602 35.907 0.024967 24 14 2 0 0 0 0.71616 1 18881 18881 15.768 1.1865 1 10129000 30657 1119 20030 20438 36494 36494 0.05578713830891502 LAKKKKKKS 9 Unmodified _LAKKKKKKS_ 0 0 0 ENST00000205636.3_1_3:32524128-32524239:-|nuORF ENST00000205636.3_1_3:32524128-32524239:-|nuORF ENST00000205636.3_1_3:32524128-32524239:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1059.07421875 1 1058.74083 1057.73355 0.72318 0.00076567 -0.86063 -0.00091119 -0.13745 -0.00014552 1059.7436372406798 72.073 0.1149 72.112 72.014 72.129 0.039024 6 5 2 0 0 0 0.21798 1 39684 39684 2.3027 2.3027 1 1856100 30658 10990 20031 20439 36495 36495 0.2069915380736802 LAKKKPLFI 9 Unmodified _LAKKKPLFI_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2333984375 2 529.360245 1056.70594 NaN NaN NaN NaN NaN NaN NaN 94.118 1 93.697 93.197 94.197 -0.42044 0 0 0 0.85737 1 51422 51422 0.6015 0 1 30659 3537 20032 20440 36496 36496 0.17985250547121723 LAKKRCSEEL 10 Unmodified _LAKKRCSEEL_ 0 0 0 ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1 ENST00000525971.6_1_12:85431954-85518298:+|nuORF ENST00000525971.6_1_12:85431954-85518298:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2178649902344 3 392.885024 1175.63324 NaN NaN NaN NaN NaN NaN NaN 21.266 1 21.266 20.766 21.766 0 0 0 0 0.98914 1 10747 10747 0.77653 0 1 30660 4525 20033 20441 36497 36497 0.05245128691399259 LAKLHLQLS 9 Unmodified _LAKLHLQLS_ 0 0 0 REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2788696289062 2 511.821484 1021.62842 0.54167 0.00027724 -0.7133 -0.00036508 -0.17163 -8.7846E-05 511.82132111594785 67.541 0.53096 61.365 61.052 61.583 -6.1757 59 29 3 0 0 0 0.15117 1 44084 44084 22.736 0 1 27549000 + 30661 17136 20034 20442 36498 36498 0.11846612610952434 LAKLKEKIF 9 Unmodified _LAKLKEKIF_ 0 0 0 ENST00000380752.9_1_13:30084114-30084255:-|nuORF ENST00000380752.9_1_13:30084114-30084255:-|nuORF ENST00000380752.9_1_13:30084114-30084255:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.241943359375 2 545.35516 1088.69577 NaN NaN NaN NaN NaN NaN NaN 75.399 1 74.922 74.422 75.422 -0.47714 0 0 0 0.84369 1 41273 41273 2.3027 0.24298 1 30662 12605 20035 20443 36499 36499 0.15496642821881323 LAKNMRQF 8 Unmodified _LAKNMRQF_ 0 0 0 REV__ENSG00000198075|ENST00000272452|SULT1C4 REV__ENSG00000198075|ENST00000272452|SULT1C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.275146484375 2 504.276386 1006.53822 0.070391 3.5496E-05 -1.4285 -0.00072037 -1.3581 -0.00068488 504.2757164188277 30.552 0.23705 30.449 30.311 30.548 -0.10269 21 8 3 0 0 0 0.67481 1 15839 15839 19.439 6.9074 1 2880700 + 30663 23986 20036 20444 36500 36500 0.03521240010877591 LAKPFGGL 8 Unmodified _LAKPFGGL_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-5|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.7452392578125 2 401.744714 801.474875 1.1194 0.00044973 0.91507 0.00036762 2.0345 0.00081735 401.74480337373546 93.829 0.35827 87.654 87.504 87.862 -6.1757 32 20 2 0 0 0 0.78849 1 62118 62118 9.3474 0 1 11610000 30664 1150 20037 20445 36501 36501 0.06619622565290229 LAKTEEAL 8 Unmodified _LAKTEEAL_ 0 0 0 REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.748046875 2 437.74765 873.480748 0.58902 0.00025784 1.1331 0.00049603 1.7222 0.00075387 437.7480698805148 57.411 0.18661 57.411 57.281 57.467 0 12 7 2 0 0 0 0.76859 1 31928 31928 11.114 0 1 981540 + 30665 21139 20038 20446 36502 36502 0.03894676286279264 LAKTEEAL 8 Unmodified _LAKTEEAL_ 0 0 0 REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 437.74765 873.480748 0.58902 0.00025784 1.1331 0.00049603 1.7222 0.00075387 437.7480698805148 57.411 0.18661 57.411 57.281 57.467 0 0 0 NaN 11.114 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 981540 + 30666 21139 20038 20446 0.03894676286279264 LAKTPAVY 8 Unmodified _LAKTPAVY_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 862.5017700195312 1 862.503281 861.496004 0.50845 0.00043854 0.044049 3.7992E-05 0.5525 0.00047653 862.5031378356676 80.667 0.75757 74.492 74.204 74.961 -6.1757 84 41 3 0 0 0 0.50673 2 52768 52768;53009 34.102 5.9292 1 50942000 + 30667 20254 20039 20447 36503;36504 36503 0.05971587874137185 LALAAGALC 9 Unmodified _LALAAGALC_ 0 0 0 ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120129|ENST00000239223|DUSP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 802.4508666992188 1 802.449136 801.44186 1.5182 0.0012183 0.18023 0.00014462 1.6984 0.0013629 802.4493313363633 102.61 0.061188 96.436 96.404 96.465 -6.1757 23 13 2 0 0 0 0.047696 1 68854 68854 45.75 7.5988 1 5946500 30668 3497 20040 20448 36505 36505 0.03319672450925282 LALAPAGFSY 10 Unmodified _LALAPAGFSY_ 0 0 0 ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L ENSG00000104885|ENST00000398665|DOT1L ENSG00000104885|ENST00000398665|DOT1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2684936523438 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 34.391 1 34.391 33.891 34.891 0 0 0 0 0.41201 1 18114 18114 30.637 0.79596 1 30669 2251 20041 20449 36506 36506 0.024109555572863428 LALDLSAPP 9 Unmodified _LALDLSAPP_ 0 0 0 REV__ENSG00000166963|ENST00000300231|MAP1A REV__ENSG00000166963|ENST00000300231|MAP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7584533691406 2 448.758018 895.501483 1.6355 0.00073396 -0.28543 -0.00012809 1.3501 0.00060587 448.75793206253223 46.602 0.32227 46.569 46.39 46.712 -0.033417 22 15 2 0 0 0 0.2143 1 25080 25080 21.747 1.293 1 2477100 + 30670 22169 20042 20450 36507 36507 0.04955266665956515 LALDTIKQY 9 Unmodified _LALDTIKQY_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B;ENSG00000130477|ENST00000519716|UNC13A ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8030395507812 2 532.802957 1063.59136 0.3551 0.0001892 -0.76713 -0.00040873 -0.41203 -0.00021953 532.8026343260874 93.048 0.25493 92.591 92.473 92.728 -0.4574 20 13 2 0 0 0 0.25681 1 50839 50839 19.257 5.3509 1 514380 30671 10134 20043 20451 36508 36508 0.062108962745242025 LALENAIC 8 Unmodified _LALENAIC_ 0 0 0 ENST00000465695.1_1_10:75532330-75533574:+|nuORF;nc|ENSG00000196968|Q495W5-2|FUT11;ENSG00000196968|ENST00000372841|FUT11 ENST00000465695.1_1_10:75532330-75533574:+|nuORF ENST00000465695.1_1_10:75532330-75533574:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7214660644531 2 423.723121 845.431689 NaN NaN NaN NaN NaN NaN NaN 70.825 1 70.825 70.325 71.325 0 0 0 0 0.90769 1 39458 39458 18.135 2.2878 1 30672 9892 20044 20452 36509 36509 0.0027906472568020035 LALEPGVAY 9 Unmodified _LALEPGVAY_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.509033203125 1 932.50876 931.501483 0.67537 0.00062979 -0.98906 -0.00092231 -0.31368 -0.00029251 932.5077584048207 59.763 0.30002 59.763 59.602 59.902 0 36 13 4 0 0 0 0.019979 2 33266 33266;33377 63.563 36.679 1 7570200 30673 9710 20045 20453 36510;36511 36510 0.032992666659424685 LALEPGVAY 9 Unmodified _LALEPGVAY_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7583618164062 2 466.758018 931.501483 0.78346 0.00036568 -1.8665 -0.00087122 -1.0831 -0.00050553 466.75731960607425 59.769 0.18618 59.769 59.671 59.857 0 13 8 2 0 0 0 0.10925 1 33309 33309 32.117 8.9685 1 1561000 30674 9710 20045 20453 36512 36512 0.032992666659424685 LALEPGVAY 9 Unmodified _LALEPGVAY_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.5092163085938 1 932.50876 931.501483 -0.041159 -3.8381E-05 -0.67018 -0.00062495 -0.71134 -0.00066333 932.5087938675345 60.363 0.099213 59.872 59.806 59.906 -0.49079 6 4 2 0 0 0 0.078417 1 32884 32884 38.151 13.477 1 1241400 30675 9710 20045 20453 36513 36513 0.032992666659424685 LALEPGVAY 9 Unmodified _LALEPGVAY_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.508544921875 1 932.50876 931.501483 0.66795 0.00062287 0.26074 0.00024315 0.92869 0.00086602 932.5094152823813 67.652 0.41451 61.476 61.323 61.737 -6.1757 39 23 2 0 0 0 0.0088154 2 44053 44053;44185 106.85 55.99 1 17938000 30676 9710 20045 20453 36514;36515 36514 0.032992666659424685 LALFAFYKPNS 11 Unmodified _LALFAFYKPNS_ 0 0 0 ENST00000487010.1_1_2:189876447-189876516:+|nuORF ENST00000487010.1_1_2:189876447-189876516:+|nuORF ENST00000487010.1_1_2:189876447-189876516:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1270.893798828125 1 1270.68304 1269.67576 0.92712 0.0011781 3.9548 0.0050253 4.8819 0.0062034 1270.6897894252884 88.619 0.18146 82.443 82.349 82.531 -6.1757 11 9 2 0 0 0 0.29564 1 58464 58464 9.3831 3.1773 1 8287600 30677 14192 20046 20454 36516 36516 0.05170847091289943 LALFHPAL 8 Unmodified _LALFHPAL_ 0 0 0 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 REV__nc|ENSG00000117598|Q32ZL2-2|PLPPR5 MSMS AL20221201_MKP_PDAC_01 4 441.2640380859375 2 441.265813 880.517074 NaN NaN NaN NaN NaN NaN NaN 44.472 1 39.62 39.12 40.12 -4.852 0 0 0 0.62523 1 27157 27157 32.454 0 1 + 30678 19118 20047 20455 36517 36517 0.07203597973636988 LALFSETAY 9 Unmodified _LALFSETAY_ 0 0 0 nc|ENSG00000236320|P0C7P3-2|SLFN14;ENSG00000236320|ENST00000674182|SLFN14 nc|ENSG00000236320|P0C7P3-2|SLFN14 nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7600708007812 2 507.760758 1013.50696 0.74907 0.00038035 -2.169 -0.0011013 -1.4199 -0.00072099 507.7600166479694 83.024 0.34975 76.848 76.715 77.065 -6.1757 29 18 2 0 0 0 0.06187 1 54517 54517 42.095 0.27733 1 15840000 30679 10646 20048 20456 36518 36518 0.0007494545775443839 LALGCATVVL 10 Unmodified _LALGCATVVL_ 0 0 0 REV__ENSG00000170743|ENST00000318881|SYT9 REV__ENSG00000170743|ENST00000318881|SYT9 MSMS AL20221201_MKP_PDAC_01 4 480.2819519042969 2 480.283346 958.552139 NaN NaN NaN NaN NaN NaN NaN 94.927 1 88.751 88.251 89.251 -6.1757 0 0 0 0.3517 1 62876 62876 34.102 1.797 1 + 30680 22507 20049 20457 36519 36519 0.07120472719293502 LALGESGTRV 10 Unmodified _LALGESGTRV_ 0 0 0 REV__ENSG00000106571|ENST00000395925|GLI3 REV__ENSG00000106571|ENST00000395925|GLI3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7836303710938 2 501.782556 1001.55056 NaN NaN NaN NaN NaN NaN NaN 65.124 1 65.124 64.624 65.624 0 0 0 0 0.91523 1 36329 36329 7.2892 2.0586 1 + 30681 18516 20050 20458 36520 36520 0.04984554954910436 LALHPVSL 8 Unmodified _LALHPVSL_ 0 0 0 ENST00000343534.9_1_1:112018642-112019966:+|nuORF;ENST00000464591.1_1_1:112018624-112019497:+|nuORF ENST00000343534.9_1_1:112018642-112019966:+|nuORF ENST00000343534.9_1_1:112018642-112019966:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.26318359375 2 425.263271 848.511988 -0.040208 -1.7099E-05 0.41433 0.0001762 0.37412 0.0001591 425.2632671377599 76.659 0.35278 76.18 76.012 76.365 -0.47945 38 22 2 0 0 0 0.50586 1 42000 42000 34.187 0 1 4236600 30682 12004 20051 20459 36521 36521 0.08167294111046886 LALHPVSL 8 Unmodified _LALHPVSL_ 0 0 0 ENST00000343534.9_1_1:112018642-112019966:+|nuORF;ENST00000464591.1_1_1:112018624-112019497:+|nuORF ENST00000343534.9_1_1:112018642-112019966:+|nuORF ENST00000343534.9_1_1:112018642-112019966:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2641906738281 2 425.263271 848.511988 1.0684 0.00045435 1.0338 0.00043964 2.1022 0.00089399 425.2636122404543 83.082 0.48151 76.906 76.643 77.125 -6.1757 35 26 2 0 0 0 0.50586 1 54610 54610 34.187 0 1 10388000 30683 12004 20051 20459 36522 36522 0.08167294111046886 LALINSLKV 9 Unmodified _LALINSLKV_ 0 0 0 ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.8187561035156 2 485.81841 969.622267 0.12191 5.9226E-05 0.93758 0.00045549 1.0595 0.00051472 485.81861595424414 38.838 0.15357 38.552 38.454 38.608 -0.28687 10 6 2 0 0 0 0.51218 1 20487 20487 6.7232 6.7232 1 1543600 30684 15396 20052 20460 36523 36523 0.13624094379429152 LALINTIT 8 Unmodified _LALINTIT_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7699890136719 2 429.768386 857.522219 0.29801 0.00012807 1.1724 0.00050388 1.4705 0.00063196 429.76911761854655 38.889 0.24311 38.901 38.738 38.981 0.011452 15 11 2 0 0 0 0.72664 1 20709 20709 14.838 3.198 1 1759000 + 30685 29829 20053 20461 36524 36524 0.08775857045600333 LALKLHHLP 9 Unmodified _LALKLHHLP_ 0 0 0 REV__ENST00000349457.7_1_16:57608924-57609494:+|nuORF REV__ENST00000349457.7_1_16:57608924-57609494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3327026367188 2 521.332019 1040.64948 NaN NaN NaN NaN NaN NaN NaN 103.94 1 103.89 103.39 104.39 -0.048737 0 0 0 0.85737 1 57716 57716 0.6015 0 1 + 30686 25779 20054 20462 36525 36525 0.13078622710463605 LALLEKKL 8 Unmodified _LALLEKKL_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7830200195312 2 464.315503 926.616454 0.56287 0.00026135 0.42292 0.00019637 0.98579 0.00045772 464.31587034440844 68.381 0.19718 68.406 68.282 68.479 0.025146 14 9 2 0 0 0 8.7369 1 37541 37541 5.2307 0 1 1285300 + 30687 22259 20055 20463 36526 36526 0.15020995867757847 LALLRLQE 8 Unmodified _LALLRLQE_ 0 0 0 ENST00000504406.5_1_5:176829295-176830555:-|nuORF;ENST00000502854.5_1_5:176829295-176830776:-|nuORF;ENSG00000131187|ENST00000253496|F12;ENST00000514943.1_1_5:176829841-176830524:-|nuORF ENST00000504406.5_1_5:176829295-176830555:-|nuORF ENST00000504406.5_1_5:176829295-176830555:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7850341796875 2 478.300384 954.586216 0.63229 0.00030243 0.94481 0.0004519 1.5771 0.00075433 478.3008546174094 67.005 0.18525 67.023 66.917 67.102 0.018028 17 8 3 0 0 0 8.7369 1 36724 36724 12.532 0 1 2327200 30688 4307 20056 20464 36527 36527 0.10710637202566886 LALLWAVGL 9 Unmodified _LALLWAVGL_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.30029296875 2 478.302396 954.590239 NaN NaN NaN NaN NaN NaN NaN 74.34 1 73.864 73.364 74.364 -0.47588 0 0 0 0.38239 1 40686 40686 20.871 0 1 30689 457 20057 20465 36528 36528 0.11112726696285335 LALMERTGY 9 Oxidation (M) _LALM(Oxidation (M))ERTGY_ LALM(1)ERTGY LALM(76)ERTGY 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47 ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.271240234375 2 535.270967 1068.52738 -0.44378 -0.00023754 0.03631 1.9435E-05 -0.40747 -0.00021811 535.27146849493 34.211 0.18437 34.211 34.123 34.308 0 16 9 2 0 0 0 0.011671 1 18015 18015 75.761 31.354 1 6148300 30690 7051 20058 20466 36529 36529 1210 -0.004142071540854886 LALMERTGY 9 Oxidation (M) _LALM(Oxidation (M))ERTGY_ LALM(1)ERTGY LALM(48)ERTGY 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47 ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MSMS AL20221201_MKP_PDAC_01 4 535.2760620117188 2 535.270967 1068.52738 NaN NaN NaN NaN NaN NaN NaN 39.468 1 35.017 34.517 35.517 -4.4509 0 0 0 0.083082 1 23425 23425 47.749 17.524 1 30691 7051 20058 20466 36530 36530 1210 -0.004142071540854886 LALMHVRFF 9 Unmodified _LALMHVRFF_ 0 0 0 REV__nc|nan|Q2M2W7-2|C17orf58 REV__nc|nan|Q2M2W7-2|C17orf58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7947998046875 2 567.318054 1132.62156 0.6216 0.00035264 -3.7621 -0.0021343 -3.1405 -0.0017816 567.3161791253451 89.043 0.341 88.539 88.298 88.639 -0.50423 20 14 2 0 0 0 0.58865 1 48607 48607 2.0598 0.21551 1 397850 + 30692 23589 20059 20467 36531 36531 0.060549764587221944 LALPAGCPTCW 11 Unmodified _LALPAGCPTCW_ 0 0 0 ENST00000262735.9_1_22:46634431-46635001:+|nuORF ENST00000262735.9_1_22:46634431-46635001:+|nuORF ENST00000262735.9_1_22:46634431-46635001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2705078125 2 566.269912 1130.52527 0.47725 0.00027025 1.0573 0.00059873 1.5346 0.00086899 566.2706202751717 59.349 0.2571 58.858 58.75 59.007 -0.49079 17 11 2 0 0 0 0.68427 1 32289 32289 5.7319 0 1 1074500 30693 11273 20060 20468 36532 36532 -0.034769591635267716 LALPDGMLY 9 Unmodified _LALPDGMLY_ 0 0 0 ENST00000452737.5_1_22:24059350-24059464:-|nuORF ENST00000452737.5_1_22:24059350-24059464:-|nuORF ENST00000452737.5_1_22:24059350-24059464:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.7601928710938 2 496.759704 991.504854 NaN NaN NaN NaN NaN NaN NaN 86.656 1 80.48 79.98 80.98 -6.1757 0 0 0 0.46757 1 57128 57128 16.942 0 1 30694 13547 20061 20469 36533 36533 0.008761934483118239 LALPTEPA 8 Unmodified _LALPTEPA_ 0 0 0 REV__ENST00000513887.5_3_3:140661433-140675458:+|nuORF REV__ENST00000513887.5_3_3:140661433-140675458:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.4571533203125 1 811.455996 810.448719 1.1417 0.00092647 -0.80626 -0.00065424 0.33549 0.00027223 811.4554629320713 83.016 0.36829 76.841 76.677 77.045 -6.1757 26 19 2 0 0 0 0.41521 2 54509 54509;54654 42.968 2.5194 1 8556000 + 30695 28184 20062 20470 36534;36535 36534 0.03591308603131438 LALPWHLF 8 Unmodified _LALPWHLF_ 0 0 0 REV__ENST00000578026.5_1_17:57335188-57344505:+|nuORF REV__ENST00000578026.5_1_17:57335188-57344505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7861022949219 2 498.786913 995.559273 0.5588 0.00027872 -0.6231 -0.0003108 -0.064302 -3.2073E-05 498.7858381042309 82.029 0.46228 81.533 81.236 81.698 -0.4952 29 17 2 0 0 0 0.76859 1 44923 44923 11.114 4.7604 1 1229900 + 30696 29038 20063 20471 36536 36536 0.061315733820492824 LALPWHLF 8 Unmodified _LALPWHLF_ 0 0 0 REV__ENST00000578026.5_1_17:57335188-57344505:+|nuORF REV__ENST00000578026.5_1_17:57335188-57344505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.787109375 2 498.786913 995.559273 1.2475 0.00062223 -1.4783 -0.00073734 -0.23077 -0.00011511 498.7861103278646 81.248 0.49189 81.308 81.041 81.533 0.059929 63 18 4 0 0 0 0.80044 1 45037 45037 6.3541 0.59368 1 25739000 + 30697 29038 20063 20471 36537 36537 0.061315733820492824 LALRSRVLL 9 Unmodified _LALRSRVLL_ 0 0 0 REV__ENSG00000158623|ENST00000425248|COPG2 REV__ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.8507080078125 2 520.850576 1039.6866 1.4093 0.00073401 -0.79582 -0.0004145 0.61344 0.00031951 520.8502322140343 95.903 0.18719 89.727 89.63 89.817 -6.1757 17 10 2 0 0 0 0.32871 1 63545 63545 15.847 1.2655 1 30048000 + 30698 21437 20064 20472 36538 36538 0.16834294256227622 LALSLFWMII 10 Unmodified _LALSLFWMII_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|327|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|327|3|anti-sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.220947265625 3 402.903356 1205.68824 0.85512 0.00034453 0.076909 3.0987E-05 0.93203 0.00037552 402.9034869491713 22.219 0.36796 19.484 19.307 19.675 -2.7348 45 19 3 0 0 0 0.23723 1 11961 11961 3.8763 0.28927 1 7293800 + 30699 16787 20065 20473 36539 36539 0.09362167229960505 LALSLGVGLSF 11 Unmodified _LALSLGVGLSF_ 0 0 0 ENST00000518114.1_1_2:190619886-190627438:-|nuORF;nc|ENSG00000128694|Q9H4B0-3|OSGEPL1;ENST00000524043.1_1_2:190618786-190626366:-|nuORF;nc|ENSG00000128694|Q9H4B0-2|OSGEPL1;ENSG00000128694|ENST00000264151|OSGEPL1 ENST00000518114.1_1_2:190619886-190627438:-|nuORF;nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 ENST00000518114.1_1_2:190619886-190627438:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8225708007812 2 538.82115 1075.62775 0.39938 0.00021519 0.28407 0.00015306 0.68345 0.00036826 538.8214044299865 66.732 0.4799 60.556 60.392 60.872 -6.1757 43 27 2 0 0 0 0.16973 1 43361 43361 34.402 4.5611 1 15301000 30700 14686;4085 20066 20474 36540 36540 0.0929577317122039 LALSVGTLT 9 Unmodified _LALSVGTLT_ 0 0 0 REV__ENSG00000174327|ENST00000308027|SLC16A13 REV__ENSG00000174327|ENST00000308027|SLC16A13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 874.5242919921875 1 874.52441 873.517133 -0.70249 -0.00061435 1.0101 0.00088338 0.30763 0.00026903 874.5250119157057 61.456 0.2986 60.966 60.818 61.116 -0.48932 23 13 2 0 0 0 0.18465 1 33539 33539 24.674 8.9057 1 2263400 + 30701 22784 20067 20475 36541 36541 0.0753155318300287 LALVASEL 8 Unmodified _LALVASEL_ 0 0 0 REV__ENSG00000087008|ENST00000356406|ACOX3 REV__ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2471618652344 2 408.247286 814.48002 0.2921 0.00011925 0.39964 0.00016315 0.69174 0.0002824 408.24745602237584 38.498 0.32414 38.498 38.379 38.703 0 42 17 3 0 0 0 0.44122 2 20565 20565;20682 40.449 0 1 10254000 + 30702 17774 20068 20476 36542;36543 36542 0.06535881637239527 LALVASEL 8 Unmodified _LALVASEL_ 0 0 0 REV__ENSG00000087008|ENST00000356406|ACOX3 REV__ENSG00000087008|ENST00000356406|ACOX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 408.247286 814.48002 0.2921 0.00011925 0.39964 0.00016315 0.69174 0.0002824 408.24745602237584 38.498 0.32414 38.498 38.379 38.703 0 0 0 NaN 40.449 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 10254000 + 30703 17774 20068 20476 0.06535881637239527 LALVQSEVR 9 Unmodified _LALVQSEVR_ 0 0 0 ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576922.5_1_17:7840526-7847657:+|nuORF;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;nc|ENSG00000170037|Q8N137-4|CNTROB ENST00000576723.5_1_17:7843028-7852016:+|nuORF ENST00000576723.5_1_17:7843028-7852016:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8013305664062 2 507.800749 1013.58694 NaN NaN NaN NaN NaN NaN NaN 54.42 1 53.953 53.453 54.453 -0.46664 0 0 0 0.41346 1 29489 29489 19.257 1.1106 1 30704 7942 20069 20477 36544 36544 0.08069431851617992 LALYTEKF 8 Unmodified _LALYTEKF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7804870605469 2 492.773668 983.532783 0.55288 0.00027245 0.35986 0.00017733 0.91275 0.00044978 492.77343802741814 67.142 0.58355 66.66 66.356 66.939 -0.48219 95 26 6 0 0 0 0.71616 1 36648 36648 15.768 3.2367 1 11326000 30705 1391 20070 20478 36545 36545 0.040358397000545665 LAMIWFAY 8 Unmodified _LAMIWFAY_ 0 0 0 REV__ENSG00000174514|ENST00000367147|MFSD4A REV__ENSG00000174514|ENST00000367147|MFSD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7591552734375 2 507.759507 1013.50446 0.60418 0.00030678 0.55278 0.00028068 1.157 0.00058746 507.7596771059456 74.596 0.26547 74.596 74.428 74.693 0 25 11 3 0 0 0 0.61999 1 41454 41454 24.21 1.0615 1 2757200 + 30706 22798 20071 20479 36546 36546 -0.0017518148090402974 LAMNTDLSIL 10 Unmodified _LAMNTDLSIL_ 0 0 0 REV__ENST00000427067.6_2_8:120606096-120613643:-|nuORF REV__ENST00000427067.6_2_8:120606096-120613643:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7733154296875 2 545.794275 1089.574 0.24048 0.00013125 -0.85414 -0.00046618 -0.61366 -0.00033493 545.7939047236977 76.45 0.27318 76.45 76.315 76.589 0 22 10 3 0 0 0 0.23991 1 42448 42448 1.4819 0.15237 1 707520 + 30707 26915 20072 20480 36547 36547 0.0327923267720962 LAMRIFEDY 9 Oxidation (M) _LAM(Oxidation (M))RIFEDY_ LAM(1)RIFEDY LAM(44)RIFEDY 0 0 1 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;ENST00000588393.5_1_19:10742408-10745595:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2842407226562 2 587.284074 1172.5536 0.76134 0.00044712 -0.24988 -0.00014675 0.51146 0.00030037 587.282258865307 50.057 0.35932 49.665 49.532 49.891 -0.3923 26 17 2 0 0 0 0.05483 1 26947 26947 43.772 27.925 1 2423300 30708 4132 20073 20481 36548 36548 737 -0.02577937982596268 LANAAYSGS 9 Unmodified _LANAAYSGS_ 0 0 0 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4078369140625 1 853.405023 852.397747 0.47328 0.0004039 0.35214 0.00030052 0.82541 0.00070441 853.4052839597963 60.357 0.35791 60.357 60.178 60.536 0 27 15 2 0 0 0 0.45045 1 33598 33598 10.074 2.1638 1 2696700 30709 6114 20074 20482 36549 36549 -0.03435640441716714 LANAREALP 9 Unmodified _LANAREALP_ 0 0 0 ENSG00000177054|ENST00000446113|ZDHHC13 ENSG00000177054|ENST00000446113|ZDHHC13 ENSG00000177054|ENST00000446113|ZDHHC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7725219726562 2 477.771991 953.529429 -0.31314 -0.00014961 0.53529 0.00025575 0.22215 0.00010613 477.772272037346 18.975 0.1287 18.975 18.931 19.06 0 18 12 2 0 0 0 0.15471 1 9470 9470 27.629 4.8925 1 724050 30710 8652 20075 20483 36550 36550 0.05080589646024691 LANEVKVLL 9 Unmodified _LANEVKVLL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.8162841796875 2 499.815867 997.617182 0.12657 6.326E-05 0.86611 0.0004329 0.99268 0.00049616 499.81630827405746 59.304 0.28079 58.813 58.665 58.946 -0.49079 20 12 2 0 0 0 0.062454 1 32268 32268 41.956 5.4494 1 2088300 30711 1800 20076 20484 36551 36551 0.11827790516804271 LANEYLVLQ 9 Unmodified _LANEYLVLQ_ 0 0 0 REV__ENSG00000135723|ENST00000258201|FHOD1 REV__ENSG00000135723|ENST00000258201|FHOD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2691650390625 2 531.795132 1061.57571 0.54459 0.00028961 -2.8139 -0.0014964 -2.2693 -0.0012068 531.7947206107758 66.794 0.13512 66.794 66.725 66.86 0 7 5 2 0 0 0 0.17275 1 37274 37274 21.747 1.293 1 530880 + 30712 20093 20077 20485 36552 36552 0.04738609757464474 LANGAIELD 9 Unmodified _LANGAIELD_ 0 0 0 ENSG00000075399|ENST00000389386|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 ENSG00000075399|ENST00000389386|VPS9D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2417297363281 2 458.242732 914.470912 1.252 0.00057374 0.29514 0.00013525 1.5472 0.00070898 458.24272571218387 54.316 0.40908 48.45 48.247 48.656 -5.8653 51 24 3 0 0 0 0.052168 2 34512 34362;34512 44.407 10.22 1 34143000 30713 1154 20078 20486 36553;36554 36554 0.010254882808908405 LANILREFNPS 11 Unmodified _LANILREFNPS_ 0 0 0 nc|ENSG00000163803|Q6P1J6-3|PLB1;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-2|PLB1;nc|ENSG00000163803|Q6P1J6-4|PLB1 nc|ENSG00000163803|Q6P1J6-3|PLB1 nc|ENSG00000163803|Q6P1J6-3|PLB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1274.890502929688 1 1273.68991 1272.68264 1.1199 0.0014264 -4.3114 -0.0054914 -3.1915 -0.004065 1273.6864168588327 81.452 0.13354 75.276 75.227 75.361 -6.1757 8 6 2 0 0 0 0.68427 1 53447 53447 5.7319 1.4026 1 12179000 30714 7070 20079 20487 36555 36555 0.05720159971860994 LANKDRPALQ 10 Unmodified _LANKDRPALQ_ 0 0 0 nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A;nc|ENSG00000169062|Q9H1J1-3|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.3222045898438 2 563.32238 1124.63021 -0.52881 -0.00029789 0.15846 8.9262E-05 -0.37035 -0.00020863 563.322687952106 30.232 0.16342 30.232 30.16 30.324 0 13 7 2 0 0 0 0.66569 1 15730 15730 6.7232 0.51738 1 1017000 30715 7829 20080 20488 36556 36556 0.07287621628893248 LANKDRPALQ 10 Unmodified _LANKDRPALQ_ 0 0 0 nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A;nc|ENSG00000169062|Q9H1J1-3|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 563.32238 1124.63021 1.652 0.00093059 -0.42245 -0.00023798 1.2295 0.00069262 563.3224622751542 33.928 0.27553 29.942 29.747 30.022 -3.9853 -0.14497 -0.00047776 NaN 6.7232 16 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3568800 30716 7829 20080 20488 0.07287621628893248 LANKLITVY 9 Unmodified _LANKLITVY_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.81787109375 2 517.815867 1033.61718 0.42072 0.00021785 0.45189 0.00023399 0.87261 0.00045185 517.8161333615066 52.031 0.25193 51.973 51.835 52.087 -0.058918 26 11 3 0 0 0 0.03568 1 28147 28147 52.268 16.141 1 5814200 30717 3164 20081 20489 36557 36557 0.10171790516801593 LANKLITVY 9 Unmodified _LANKLITVY_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 517.815867 1033.61718 0.47882 0.00024794 0.44769 0.00023182 0.92651 0.00047976 518.3180422932604 52.36 0.1549 51.926 51.83 51.985 -0.43367 -0.023044 -3.8813E-06 NaN 52.268 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1273100 30718 3164 20081 20489 0.10171790516801593 LANLVGLAE 9 Unmodified _LANLVGLAE_ 0 0 0 ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89 ENSG00000121289|ENST00000305768|CEP89 ENSG00000121289|ENST00000305768|CEP89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.5202026367188 1 899.519659 898.512382 -0.31102 -0.00027977 0.15231 0.00013701 -0.1587 -0.00014276 899.5197751074446 52.066 0.33482 52.066 51.908 52.243 0 29 14 3 0 0 0 0.14602 1 28876 28876 28.487 0.31361 1 8100800 30719 3576 20082 20490 36558 36558 0.05906669040234647 LANQYEKF 8 Unmodified _LANQYEKF_ 0 0 0 ENSG00000186212|ENST00000334306|SOWAHB ENSG00000186212|ENST00000334306|SOWAHB ENSG00000186212|ENST00000334306|SOWAHB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7881469726562 2 506.758549 1011.50255 1.5849 0.00080316 -3.5198 -0.0017837 -1.9349 -0.00098052 506.7567231724796 100.87 0.23363 94.69 94.515 94.748 -6.1757 20 15 2 0 0 0 8.7369 1 67517 67517 10.183 0.83596 1 32514000 30720 9462 20083 20491 36559 36559 -0.002745189651477631 LANTREILV 9 Unmodified _LANTREILV_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.8084716796875 2 514.808574 1027.60259 -0.29687 -0.00015283 0.12266 6.3145E-05 -0.17421 -8.9687E-05 514.8090011052033 55.302 0.2195 55.302 55.17 55.389 0 13 9 2 0 0 0 0.10734 1 30699 30699 32.305 8.2849 1 1982200 30721 6463 20084 20492 36560 36560 0.08989718368638933 LANVSTVL 8 Unmodified _LANVSTVL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.479736328125 1 816.482545 815.475269 -0.55898 -0.0004564 -1.1731 -0.00095778 -1.732 -0.0014142 816.48188652644 55.965 0.1586 55.965 55.934 56.093 0 10 7 2 0 0 0 0.28079 1 31122 31122 57.471 9.1255 1 1913500 + 30722 156 20085 20493 36561 36561 0.060149974944692985 LANWANEME 9 Unmodified _LANWANEME_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1638793945312 3 359.827175 1076.45969 -0.26458 -9.5204E-05 3.2745 0.0011782 3.0099 0.001083 359.82766348613177 40.625 0.36814 40.625 40.352 40.72 0 27 19 2 0 0 0 0.58466 1 21850 21850 1.1933 0 1 4215500 + 30723 17544 20086 20494 36562 36562 -0.0754765708488776 LANWANEME 9 Unmodified _LANWANEME_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 359.827175 1076.45969 -0.26458 -9.5204E-05 3.2745 0.0011782 3.0099 0.001083 359.82766348613177 40.625 0.36814 40.625 40.352 40.72 0 0.086551 -0.00030841 NaN 1.1933 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4215500 + 30724 17544 20086 20494 -0.0754765708488776 LANWANEME 9 Unmodified _LANWANEME_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 359.827175 1076.45969 1.0951 0.00039403 3.9281 0.0014134 5.0232 0.0018075 360.1632830884919 45.407 0.03883 40.452 40.425 40.464 -4.9549 -0.086551 0.0003972 NaN 1.1933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 5171100 + 30725 17544 20086 20494 -0.0754765708488776 LAPARSAPV 9 Unmodified _LAPARSAPV_ 0 0 0 REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2643127441406 2 441.263802 880.513051 0.23525 0.00010381 -0.50336 -0.00022212 -0.26811 -0.00011831 441.26359143587945 26.072 0.28909 23.121 22.955 23.244 -2.9511 28 17 2 0 0 0 0.1773 1 14292 14292 25.399 0.72543 1 10382000 + 30726 25457 20087 20495 36563 36563 0.06801508479941276 LAPARSAPV 9 Unmodified _LAPARSAPV_ 0 0 0 REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF REV__ENST00000315150.9_1_3:128813878-128840609:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 441.263802 880.513051 0.23525 0.00010381 -0.50336 -0.00022212 -0.26811 -0.00011831 441.26359143587945 26.072 0.28909 23.121 22.955 23.244 -2.9511 -0.10399 -0.00019141 NaN 25.399 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 10382000 + 30727 25457 20087 20495 0.06801508479941276 LAPDIKILT 9 Unmodified _LAPDIKILT_ 0 0 0 REV__nc|ENSG00000019991|P14210-4|HGF;REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MSMS AL20221201_MKP_PDAC_01 4 492.3113708496094 2 492.310418 982.606283 NaN NaN NaN NaN NaN NaN NaN 105.38 1 99.203 98.703 99.703 -6.1757 0 0 0 0.84892 1 70612 70612 1.6526 0 1 + 30728 17104;29485 20088 20496 36564 36564 0.11428388142508084 LAPEGHGPSPH 11 Unmodified _LAPEGHGPSPH_ 0 0 0 ENST00000480878.6_1_19:40741944-40744877:-|nuORF ENST00000480878.6_1_19:40741944-40744877:-|nuORF ENST00000480878.6_1_19:40741944-40744877:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2706909179688 2 549.76998 1097.52541 0.47546 0.0002614 1.1757 0.00064638 1.6512 0.00090777 549.770605985407 87.537 0.55736 87.033 86.681 87.239 -0.50423 67 24 4 0 0 0 0.71341 1 47787 47787 2.9952 2.9952 1 5818000 30729 14067 20089 20497 36565 36565 -0.019454998476703622 LAPENWSVI 9 Unmodified _LAPENWSVI_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3209838867188 2 514.7742 1027.53385 0.49296 0.00025376 -0.51062 -0.00026285 -0.017653 -9.0872E-06 514.7741395207778 73.86 0.29321 73.904 73.781 74.074 0.043983 28 13 3 0 0 0 0.20727 1 40686 40686 4.3292 4.3292 1 3480400 30730 8543 20090 20498 36566 36566 0.021180540689329064 LAPETDEDDL 10 Unmodified _LAPETDEDDL_ 0 0 0 nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7897338867188 2 559.248408 1116.48226 0.39124 0.0002188 0.096435 5.3931E-05 0.48767 0.00027273 559.2482217389253 63.81 0.22058 63.81 63.709 63.93 0 14 8 3 0 0 0 0.23489 1 35561 35561 4.3292 0 1 901350 30731 594 20091 20499 36567 36567 -0.07131779206292777 LAPFGWFLL 9 Unmodified _LAPFGWFLL_ 0 0 0 REV__ENSG00000259803|ENST00000682282|SLC22A31 REV__ENSG00000259803|ENST00000682282|SLC22A31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2957153320312 2 532.302396 1062.59024 NaN NaN NaN NaN NaN NaN NaN 100.84 1 100.8 100.3 101.3 -0.04216 0 0 0 0.70111 1 56018 56018 9.3474 2.9933 1 + 30732 24574 20092 20500 36568 36568 0.061447266962886715 LAPFVVEWE 9 Unmodified _LAPFVVEWE_ 0 0 0 REV__nc|ENSG00000145808|Q8TE59|ADAMTS19 REV__nc|ENSG00000145808|Q8TE59|ADAMTS19 MSMS AL20221201_MKP_PDAC_01 4 545.2877197265625 2 545.2844 1088.55425 NaN NaN NaN NaN NaN NaN NaN 20.42 1 17.727 17.227 18.227 -2.693 0 0 0 0.82396 1 10879 10879 4.756 0.42677 1 + 30733 20795 20093 20501 36569 36569 0.01351224728773559 LAPKKAAAPR 10 Unmodified _LAPKKAAAPR_ 0 0 0 REV__ENSG00000189350|ENST00000379558|TOGARAM2 REV__ENSG00000189350|ENST00000379558|TOGARAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8278503417969 2 511.827101 1021.63965 0.058804 3.0097E-05 0.064938 3.3237E-05 0.12374 6.3335E-05 511.8272759905999 31.691 0.23614 31.721 31.564 31.8 0.030106 20 10 2 0 0 0 0.67033 1 16587 16587 6.2058 0.47393 1 2646100 + 30734 23779 20094 20502 36570 36570 0.12969434705075855 LAPLANRTF 9 Unmodified _LAPLANRTF_ 0 0 0 REV__nc|ENSG00000136940|Q13371-2|PDCL REV__nc|ENSG00000136940|Q13371-2|PDCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7910766601562 2 501.790184 1001.56581 0.35037 0.00017581 0.89497 0.00044909 1.2453 0.0006249 501.79058771560585 47.306 0.345 46.953 46.74 47.085 -0.3526 32 14 3 0 0 0 0.08691 1 25321 25321 36.127 1.7253 1 8780200 + 30735 20204 20095 20503 36571 36571 0.06509466542763676 LAPLSPLSL 9 Unmodified _LAPLSPLSL_ 0 0 0 REV__ENST00000473682.5_1_1:111739796-111739889:-|nuORF REV__ENST00000473682.5_1_1:111739796-111739889:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7841491699219 2 455.784036 909.553519 0.32699 0.00014904 -1.3437 -0.00061246 -1.0168 -0.00046342 455.7841321427902 75.951 0.59962 75.474 75.19 75.789 -0.47714 64 25 3 0 0 0 0.023164 1 41609 41609 60.39 0 1 4731300 + 30736 27548 20096 20504 36572 36572 0.09512430079701062 LAPMGELVAL 10 Unmodified _LAPMGELVAL_ 0 0 0 REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12 REV__nc|ENSG00000127452|Q9NXK8-2|FBXL12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7308959960938 2 507.288628 1012.5627 0.35964 0.00018244 2.9851 0.0015143 3.3447 0.0016967 507.29022368199674 37.717 0.20008 37.717 37.586 37.786 0 15 9 2 0 0 0 0.20941 1 20119 20119 20.454 3.3407 1 1582600 + 30737 19581 20097 20505 36573 36573 0.05692455373730354 LAPPGRRS 8 Unmodified _LAPPGRRS_ 0 0 0 REV__ENST00000529203.1_1_11:67269454-67270084:-|nuORF REV__ENST00000529203.1_1_11:67269454-67270084:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2544250488281 2 427.253769 852.492984 0.34125 0.0001458 0.14358 6.1344E-05 0.48483 0.00020714 427.2538211986222 16.53 0.2699 13.973 13.83 14.1 -2.557 97 39 3 0 0 0 0.80505 1 8500 8500 3.5965 0 1 15372000 + 30738 28418 20098 20506 36574 36574 0.0608375753998871 LAPPYDPD 8 Unmodified _LAPPYDPD_ 0 0 0 ENSG00000181915|ENST00000373783|ADO ENSG00000181915|ENST00000373783|ADO ENSG00000181915|ENST00000373783|ADO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 887.4144897460938 1 887.414525 886.407249 -0.18049 -0.00016017 0.10937 9.7053E-05 -0.071124 -6.3116E-05 887.4147284870041 87.897 0.36641 87.393 87.215 87.582 -0.50423 30 16 2 0 0 0 0.5284 1 48148 48148 32.117 32.117 1 1591400 30739 9006 20099 20507 36575 36575 -0.040498721562016726 LAPRGILELY 10 Unmodified _LAPRGILELY_ 0 0 0 REV__nc|ENSG00000257335|O43451-1|MGAM REV__nc|ENSG00000257335|O43451-1|MGAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8394775390625 2 572.839874 1143.66519 NaN NaN NaN NaN NaN NaN NaN 75.206 1 75.252 74.752 75.752 0.045959 0 0 0 0.75596 1 41470 41470 16.149 0 1 + 30740 24564 20100 20508 36576 36576 0.09910864436869815 LAPRVLRA 8 Unmodified _LAPRVLRA_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MSMS AL20221201_MKP_PDAC_01 4 448.2952270507812 2 448.295436 894.57632 NaN NaN NaN NaN NaN NaN NaN 38.708 1 34.257 33.757 34.757 -4.4509 0 0 0 0.53879 1 22877 22877 38.151 3.9638 1 30741 710 20101 20509 36577 36577 0.1248149398784335 LAPSDPFSL 9 Unmodified _LAPSDPFSL_ 0 0 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7478942871094 2 473.74765 945.480748 0.2562 0.00012137 0.22037 0.0001044 0.47657 0.00022577 473.74763695010876 81.625 0.32005 81.625 81.439 81.759 0 30 16 2 0 0 0 0.39863 1 45361 45361 12.532 0 1 921730 30742 2284 20102 20510 36578 36578 0.0058267628628527746 LAPSLLPLS 9 Unmodified _LAPSLLPLS_ 0 0 0 ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7846984863281 2 455.784036 909.553519 0.94932 0.00043268 -1.3281 -0.00060531 -0.37875 -0.00017263 455.7839221528445 83.061 0.79529 76.886 76.608 77.403 -6.1757 73 42 2 0 0 0 0.038285 1 54755 54755 50.855 0 1 34202000 30743 12962 20103 20511 36579 36579 0.09512430079701062 LAPSQAYTL 9 Unmodified _LAPSQAYTL_ 0 0 0 REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|27|1|anti-sense REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|27|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2608947753906 2 482.260925 962.507297 0.59797 0.00028838 -0.27574 -0.00013298 0.32222 0.0001554 482.2608699197207 86.425 0.34634 85.921 85.769 86.115 -0.50318 31 14 3 0 0 0 0.54444 1 47377 47377 4.756 0 1 1106000 + 30744 29404 20104 20512 36580 36580 0.02454365177618456 LAPSRQDIF 9 Unmodified _LAPSRQDIF_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.28662109375 2 523.785099 1045.55564 0.36579 0.00019159 1.7658 0.00092488 2.1315 0.0011165 523.7873192758229 57.212 0.61829 56.723 56.304 56.923 -0.48974 88 28 5 0 0 0 0.32871 1 31003 31003 15.847 1.0089 1 18309000 30745 6600 20105 20513 36581 36581 0.03468858817495857 LAPTEPPP 8 Unmodified _LAPTEPPP_ 0 0 0 REV__nc|ENSG00000170190|O15375-2|SLC16A5 REV__nc|ENSG00000170190|O15375-2|SLC16A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.4406127929688 1 821.440346 820.433069 0.14389 0.0001182 0.21451 0.00017621 0.3584 0.0002944 821.4406077120912 52.826 0.30442 52.826 52.678 52.982 0 23 13 2 0 0 0 0.55032 1 29321 29321 30.225 3.8835 1 2340500 + 30746 22454 20106 20514 36582 36582 0.01567022086101133 LAPWMQQVPRG 11 Unmodified _LAPWMQQVPRG_ 0 0 0 ENST00000547437.5_1_19:14721065-14721212:+|nuORF ENST00000547437.5_1_19:14721065-14721212:+|nuORF ENST00000547437.5_1_19:14721065-14721212:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2283630371094 3 428.229014 1281.66521 NaN NaN NaN NaN NaN NaN NaN 62.854 1 62.854 62.354 63.354 0 0 0 0 0.94165 1 35061 35061 0.45452 0 1 30747 15122 20107 20515 36583 36583 0.03564541165178525 LAPYMYPVHG 10 Unmodified _LAPYMYPVHG_ 0 0 0 REV__nc|ENSG00000285891|A0A3B3IT52|MSANTD5 REV__nc|ENSG00000285891|A0A3B3IT52|MSANTD5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2431030273438 2 574.283877 1146.5532 0.32656 0.00018754 2.4996 0.0014355 2.8261 0.001623 574.2857703338683 52.522 0.44019 52.522 52.332 52.773 0 26 19 2 0 0 0 0.22993 1 29007 29007 4.3292 0.38484 1 1881400 + 30748 30017 20108 20516 36584 36584 -0.014213129117933931 LAPYTPPF 8 Unmodified _LAPYTPPF_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2423095703125 2 453.242004 904.469455 0.60118 0.00027248 1.5617 0.00070781 2.1628 0.00098029 453.24290779127665 81.822 0.20705 81.327 81.236 81.443 -0.4952 11 7 2 0 0 0 0.80722 1 44830 44830 2.3027 0 1 288320 30749 2457 20109 20517 36585 36585 0.013398989828033336 LAQEWQAQSPF 11 Unmodified _LAQEWQAQSPF_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.8194580078125 2 652.817127 1303.6197 0.52891 0.00034528 1.1864 0.00077453 1.7154 0.0011198 652.8180948362321 48.015 0.17551 47.662 47.555 47.73 -0.3526 12 8 2 0 0 0 0.70701 1 25776 25776 3.5965 0 1 3895700 + 30750 22604 20110 20518 36586 36586 -0.019964058162031506 LAQHAWRY 8 Unmodified _LAQHAWRY_ 0 0 0 REV__ENST00000587974.1_1_18:43487913-43547205:-|nuORF REV__ENST00000587974.1_1_18:43487913-43547205:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.1901245117188 2 522.772326 1043.5301 0.55791 0.00029166 0.053216 2.782E-05 0.61112 0.00031948 523.2738710480145 50.602 0.10388 50.602 50.518 50.622 0 6 4 2 0 0 0 8.7369 1 27861 27861 0.79363 0 1 850450 + 30751 21108 20111 20519 36587 36587 0.010074290857573942 LAQKWHTAP 9 Unmodified _LAQKWHTAP_ 0 0 0 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.569946289062 1 1051.56834 1050.56106 0.025906 2.7242E-05 0.15229 0.00016014 0.17819 0.00018738 1052.5694827855457 60.087 0.12111 59.596 59.509 59.63 -0.49079 6 5 2 0 0 0 0.58466 1 32708 32708 2.3027 0.24298 1 1961400 + 30752 24094 20112 20520 36588 36588 0.03780582400008825 LAQKWHTAP 9 Unmodified _LAQKWHTAP_ 0 0 0 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 REV__nc|ENSG00000198890|Q96LA8-2|PRMT6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1051.56834 1050.56106 0.025906 2.7242E-05 0.15229 0.00016014 0.17819 0.00018738 1052.5694827855457 60.087 0.12111 59.596 59.509 59.63 -0.49079 0 0 NaN 2.3027 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1961400 + 30753 24094 20112 20520 0.03780582400008825 LAQLELLL 8 Unmodified _LAQLELLL_ 0 0 0 REV__ENST00000557207.1_2_14:76618923-76619157:+|nuORF REV__ENST00000557207.1_2_14:76618923-76619157:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7929992675781 2 456.791861 911.569169 NaN NaN NaN NaN NaN NaN NaN 81.498 1 81.006 80.506 81.506 -0.49247 0 0 0 0.97444 1 44628 44628 2.8892 0 1 + 30754 28785 20113 20521 36589 36589 0.10984716596760791 LAQLNFDL 8 Unmodified _LAQLNFDL_ 0 0 0 REV__ENSG00000215174|ENST00000434992|NLRP2B REV__ENSG00000215174|ENST00000434992|NLRP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2565612792969 2 467.255643 932.496732 0.49385 0.00023076 0.54353 0.00025397 1.0374 0.00048472 467.25580622822673 80.461 0.18359 80.461 80.335 80.519 0 16 9 2 0 0 0 0.77907 1 44635 44635 10.183 0 1 594980 + 30755 24334 20114 20522 36590 36590 0.027783825231949777 LAQLNFDL 8 Unmodified _LAQLNFDL_ 0 0 0 REV__ENSG00000215174|ENST00000434992|NLRP2B REV__ENSG00000215174|ENST00000434992|NLRP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2559204101562 2 467.255643 932.496732 0.7753 0.00036226 -0.34236 -0.00015997 0.43294 0.00020229 467.25549646330046 80.976 0.3103 80.483 80.251 80.561 -0.49247 28 13 3 0 0 0 0.72953 1 44371 44371 14.582 1.0738 1 1858100 + 30756 24334 20114 20522 36591 36591 0.027783825231949777 LAQLPGRP 8 Unmodified _LAQLPGRP_ 0 0 0 REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.743408203125 2 426.25852 850.502486 -0.27044 -0.00011528 0.67856 0.00028924 0.40811 0.00017396 426.25888832040715 34.186 0.36025 33.994 33.77 34.13 -0.19131 28 13 3 0 0 0 8.7369 1 17753 17753 5.2307 0 1 6229100 + 30757 25481 20115 20523 36592 36592 0.07125525825529166 LAQLYQHQ 8 Unmodified _LAQLYQHQ_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2876281738281 2 500.764166 999.513779 0.12096 6.0574E-05 1.3769 0.0006895 1.4979 0.00075007 500.7646800889015 77.006 0.4387 77.056 76.934 77.372 0.05011 36 17 3 0 0 0 8.7369 1 42501 42501 9.3474 0.75416 1 2555800 30758 5274 20116 20524 36593 36593 0.014003031290030776 LAQLYQHQ 8 Unmodified _LAQLYQHQ_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 500.764166 999.513779 -1.023 -0.00051229 4.1436 0.002075 3.1206 0.0015627 500.76617094002637 77.669 0.14758 77.187 77.121 77.269 -0.4826 0.065143 0.0020828 NaN 9.3474 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 284220 30759 5274 20116 20524 0.014003031290030776 LAQNRDQP 8 Unmodified _LAQNRDQP_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2474975585938 2 471.243598 940.472643 0.90621 0.00042705 3.027 0.0014264 3.9332 0.0018535 471.2447917558854 34.876 0.35977 30.781 30.632 30.991 -4.0951 33 20 2 0 0 0 0.67686 1 20227 20227 19.257 5.6421 1 12631000 + 30760 18400 20117 20525 36594 36594 2.5420895212846517E-05 LAQQGHYD 8 Unmodified _LAQQGHYD_ 0 0 0 ENSG00000198807|ENST00000361487|PAX9 ENSG00000198807|ENST00000361487|PAX9 ENSG00000198807|ENST00000361487|PAX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 931.42919921875 1 931.426821 930.419545 0.41699 0.00038839 0.81987 0.00076365 1.2369 0.001152 931.428153147852 102.64 0.06691 102.64 102.59 102.66 0 4 2 2 0 0 0 0.80676 1 56602 56602 2.5775 0 1 277680 30761 10159 20118 20526 36595 36595 -0.04844835693143068 LAQQHQEMIQ 10 Unmodified _LAQQHQEMIQ_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.0361022949219 3 409.204645 1224.59211 0.69958 0.00028627 0.51424 0.00021043 1.2138 0.0004967 409.20490797121676 40.484 0.35596 35.955 35.774 36.13 -4.5294 29 21 2 0 0 0 0.23986 1 24177 24177 0.69767 0.2894 1 10319000 + 30762 18680 20119 20527 36596 36596 -0.011206323480564606 LAQQHQEMIQ 10 Unmodified _LAQQHQEMIQ_ 0 0 0 REV__ENSG00000109944|ENST00000227349|JHY REV__ENSG00000109944|ENST00000227349|JHY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 409.204645 1224.59211 -0.3928 -0.00016074 -0.31232 -0.0001278 -0.70513 -0.00028854 409.20448153062944 36.058 0.39772 36.083 35.928 36.326 0.024967 0.063933 -0.00036222 NaN 0.69767 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 11419000 + 30763 18680 20119 20527 -0.011206323480564606 LAQQSLVF 8 Unmodified _LAQQSLVF_ 0 0 0 REV__ENSG00000164794|ENST00000524391|KCNV1 REV__ENSG00000164794|ENST00000524391|KCNV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2589721679688 2 453.258185 904.501818 0.39087 0.00017716 0.72052 0.00032658 1.1114 0.00050375 453.2586252856351 86.404 0.20718 85.901 85.769 85.976 -0.50318 11 8 2 0 0 0 0.78849 1 47244 47244 9.3474 0 1 379700 + 30764 21950 20120 20528 36597 36597 0.045746863858198594 LAQQYWYL 8 Unmodified _LAQQYWYL_ 0 0 0 REV__nc|ENSG00000253291|A0A0K0K1E9|TRBV7-7 REV__nc|ENSG00000253291|A0A0K0K1E9|TRBV7-7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7762451171875 2 542.776742 1083.53893 -0.18071 -9.8083E-05 -1.7181 -0.00093254 -1.8988 -0.0010306 542.7756457046427 38.142 0.23152 37.871 37.761 37.992 -0.27133 18 10 2 0 0 0 0.76859 1 20114 20114 11.114 5.8838 1 1501500 + 30765 29980 20121 20529 36598 36598 0.0005035793155911961 LAQSLYMV 8 Unmodified _LAQSLYMV_ 0 0 0 nc|ENSG00000197901|Q4U2R8-3|SLC22A6;nc|ENSG00000197901|Q4U2R8-4|SLC22A6;ENSG00000197901|ENST00000360421|SLC22A6;nc|ENSG00000197901|Q4U2R8|SLC22A6 nc|ENSG00000197901|Q4U2R8-3|SLC22A6 nc|ENSG00000197901|Q4U2R8-3|SLC22A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7467346191406 2 462.746596 923.478639 -0.061477 -2.8448E-05 1.0648 0.00049273 1.0033 0.00046428 462.74696819720526 69.232 0.36948 68.752 68.554 68.923 -0.48071 27 15 2 0 0 0 0.80044 1 37850 37850 6.3541 0 1 843430 30766 10020 20122 20530 36599 36599 0.01383924276842663 LAQSQSSY 8 Unmodified _LAQSQSSY_ 0 0 0 REV__ENSG00000175985|ENST00000322564|PLEKHD1 REV__ENSG00000175985|ENST00000322564|PLEKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2111511230469 2 442.211432 882.408311 -0.12075 -5.3395E-05 0.092417 4.0868E-05 -0.028328 -1.2527E-05 442.21162139137726 29.421 0.26743 29.421 29.222 29.489 0 20 12 2 0 0 0 0.80143 1 15189 15189 5.7604 0 1 1771300 + 30767 22902 20123 20531 36600 36600 -0.037596577872704984 LAQSQSSY 8 Unmodified _LAQSQSSY_ 0 0 0 REV__ENSG00000175985|ENST00000322564|PLEKHD1 REV__ENSG00000175985|ENST00000322564|PLEKHD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.211432 882.408311 -0.12075 -5.3395E-05 0.092417 4.0868E-05 -0.028328 -1.2527E-05 442.21162139137726 29.421 0.26743 29.421 29.222 29.489 0 0 0 NaN 5.7604 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1771300 + 30768 22902 20123 20531 -0.037596577872704984 LAQSVVLSF 9 Unmodified _LAQSVVLSF_ 0 0 0 ENST00000254616.10_1_11:6503555-6503747:+|nuORF ENST00000254616.10_1_11:6503555-6503747:+|nuORF ENST00000254616.10_1_11:6503555-6503747:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2798767089844 2 482.279118 962.543683 0.97794 0.00047164 0.53172 0.00025644 1.5097 0.00072807 482.2793323153004 63.444 0.40719 57.269 57.019 57.427 -6.1757 59 23 3 0 0 0 0.028475 1 41017 41017 56.177 3.9087 1 93048000 30769 11163 20124 20532 36601 36601 0.060912420743420626 LAQTIHVVFFP 11 Unmodified _LAQTIHVVFFP_ 0 0 0 REV__ENSG00000069696|ENST00000176183|DRD4 REV__ENSG00000069696|ENST00000176183|DRD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3599853515625 2 636.360973 1270.70739 0.15043 9.5726E-05 -2.3838 -0.001517 -2.2334 -0.0014213 636.8617122287701 65.694 0.59747 59.518 59.285 59.883 -6.1757 70 34 3 0 0 0 0.56638 1 42803 42803 13.042 0.80181 1 96808000 + 30770 17453 20125 20533 36602 36602 0.08286839845209215 LAQWIPFWSH 10 Unmodified _LAQWIPFWSH_ 0 0 0 ENST00000492806.5_1_3:42788640-42799837:-|nuORF ENST00000492806.5_1_3:42788640-42799837:-|nuORF ENST00000492806.5_1_3:42788640-42799837:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.8910217285156 3 428.888986 1283.64513 NaN NaN NaN NaN NaN NaN NaN 16.169 1 13.612 13.112 14.112 -2.557 0 0 0 0.99091 1 8357 8357 0.69767 0.24315 1 30771 14297 20126 20534 36603 36603 0.01465113496919912 LARAPAAR 8 Unmodified _LARAPAAR_ 0 0 0 REV__ENST00000358025.7_1_14:64319748-64375843:+|nuORF REV__ENST00000358025.7_1_14:64319748-64375843:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2572631835938 2 413.256311 824.49807 1.0086 0.00041682 -0.53929 -0.00022286 0.46933 0.00019395 413.2560785313241 32.627 0.25328 28.77 28.601 28.854 -3.8562 19 12 2 0 0 0 0.78849 1 18600 18600 9.3474 0 1 5538200 + 30772 25866 20127 20535 36604 36604 0.07880061402602223 LARDIYKNDY 10 Unmodified _LARDIYKNDY_ 0 0 0 ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ENSG00000047936|ENST00000368507|ROS1 ENSG00000047936|ENST00000368507|ROS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2185668945312 3 424.21906 1269.63535 0.076942 3.264E-05 2.5155 0.0010671 2.5924 0.0010998 424.21931995554957 84.575 0.22186 84.575 84.465 84.687 0 20 9 3 0 0 0 0.71981 1 46888 46888 0.69767 0.1345 1 652150 30773 695 20128 20536 36605 36605 0.011318807008592557 LARDLEEEF 9 Unmodified _LARDLEEEF_ 0 0 0 ENSG00000214706|ENST00000417626|IFRD2;ENST00000464258.5_1_3:50325776-50327005:-|nuORF ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2776489257812 2 561.277303 1120.54005 0.27818 0.00015614 -0.02977 -1.6709E-05 0.24841 0.00013943 561.2770503035837 46.897 0.19896 46.897 46.781 46.98 0 16 9 2 0 0 0 0.01958 1 25629 25629 63.961 12.331 1 5828600 30774 10504 20129 20537 36606 36606 -0.015394724901852896 LAREGLNEL 9 Unmodified _LAREGLNEL_ 0 0 0 REV__ENST00000362077.4_1_21:35445925-35635139:+|nuORF REV__ENST00000362077.4_1_21:35445925-35635139:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2629699707031 2 507.782556 1013.55056 -0.45083 -0.00022892 1.2197 0.00061934 0.76887 0.00039042 507.78264825383917 30.232 0.1846 30.232 30.139 30.324 0 10 8 2 0 0 0 0.20139 1 15714 15714 10.824 0 1 726710 + 30775 24479 20130 20538 36607 36607 0.04432554954905754 LARGAHVP 8 Unmodified _LARGAHVP_ 0 0 0 REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.7431030273438 2 410.743037 819.471521 -0.25549 -0.00010494 1.2462 0.00051186 0.9907 0.00040692 410.7435251530717 30.123 0.2113 30.153 30.021 30.233 0.030106 14 8 2 0 0 0 0.67481 1 15758 15758 19.439 4.8573 1 1053200 + 30776 24976 20131 20539 36608 36608 0.05456372511275731 LARGAHVP 8 Unmodified _LARGAHVP_ 0 0 0 REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.7432556152344 2 410.743037 819.471521 0.95747 0.00039327 0.31087 0.00012769 1.2683 0.00052096 410.74309258300747 34.377 0.39711 30.282 30.106 30.503 -4.0951 31 22 2 0 0 0 0.61462 2 19774 19774;19917 24.674 3.8027 1 12147000 + 30777 24976 20131 20539 36609;36610 36609 0.05456372511275731 LARGAHVP 8 Unmodified _LARGAHVP_ 0 0 0 REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 410.743037 819.471521 0.61376 0.0002521 0.68248 0.00028032 1.2962 0.00053242 410.743438569514 30.335 0.20583 30.254 30.153 30.359 -0.080431 0.024578 2.2823E-06 NaN 24.674 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1089000 + 30778 24976 20131 20539 0.05456372511275731 LARGAHVP 8 Unmodified _LARGAHVP_ 0 0 0 REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 410.743037 819.471521 -0.25549 -0.00010494 1.2462 0.00051186 0.9907 0.00040692 410.7435251530717 30.123 0.2113 30.153 30.021 30.233 0.030106 -0.076599 0.00046536 NaN 24.674 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1053200 + 30779 24976 20131 20539 0.05456372511275731 LARGAHVP 8 Unmodified _LARGAHVP_ 0 0 0 REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF REV__ENST00000261205.8_1_12:79258708-79371613:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 410.743037 819.471521 0.95747 0.00039327 0.31087 0.00012769 1.2683 0.00052096 410.74309258300747 34.377 0.39711 30.282 30.106 30.503 -4.0951 0.052021 -0.00030299 NaN 24.674 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 12147000 + 30780 24976 20131 20539 0.05456372511275731 LARGHFVG 8 Unmodified _LARGHFVG_ 0 0 0 ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.7437133789062 2 428.743037 855.471521 0.073302 3.1428E-05 1.9353 0.00082973 2.0086 0.00086116 428.7435963928225 64.682 0.45176 64.682 64.45 64.901 0 54 21 4 0 0 0 0.80975 1 36091 36091 0.79363 0 1 32020000 30781 13774 20132 20540 36611 36611 0.03800372511295791 LARGHFVG 8 Unmodified _LARGHFVG_ 0 0 0 ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 428.743037 855.471521 0.38002 0.00016293 2.1396 0.00091732 2.5196 0.0010803 428.74384386356104 64.962 0.45147 64.478 64.254 64.705 -0.48428 -0.05619 -4.6833E-06 NaN 0.79363 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 17022000 30782 13774 20132 20540 0.03800372511295791 LARGHFVG 8 Unmodified _LARGHFVG_ 0 0 0 ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF ENST00000467302.5_1_1:109234995-109235238:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 428.743037 855.471521 0.87052 0.00037323 2.3871 0.0010235 3.2577 0.0013967 428.74362159721346 64.453 0.57533 64.442 64.214 64.79 -0.010529 -0.091969 0.00020761 NaN 0.79363 85 28 5 NaN NaN NaN NaN 0 NaN NaN 0 194520000 30783 13774 20132 20540 0.03800372511295791 LARGKKKNT 9 Unmodified _LARGKKKNT_ 0 0 0 ENST00000412065.1_2_2:211036372-211036462:+|nuORF ENST00000412065.1_2_2:211036372-211036462:+|nuORF ENST00000412065.1_2_2:211036372-211036462:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.3260803222656 2 508.322183 1014.62981 1.4526 0.00073839 3.0545 0.0015527 4.5071 0.0022911 508.32368224533684 104.7 0.12582 98.526 98.457 98.582 -6.1757 17 11 2 0 0 0 0.59812 1 70092 70092 1.4819 0.15237 1 15215000 30784 12983 20133 20541 36612 36612 0.1230824669970616 LARHRRTHT 9 Unmodified _LARHRRTHT_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316;ENSG00000179965|ENST00000319296|ZNF771 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.7483825683594 3 383.223362 1146.64826 0.28175 0.00010797 1.0264 0.00039333 1.3081 0.0005013 383.22374289002613 51.981 0.1692 51.922 51.814 51.983 -0.058914 10 7 2 0 0 0 0.21806 1 28183 28183 1.0715 0.10919 1 804360 30785 10386 20134 20542 36613 36613 0.08079801394274 LARIMWRRRQY 11 Unmodified _LARIMWRRRQY_ 0 0 0 REV__ENSG00000186160|ENST00000334194|CYP4Z1 REV__ENSG00000186160|ENST00000334194|CYP4Z1 MSMS AL20221201_MKP_PDAC_01 4 516.9628295898438 3 516.961261 1547.86195 NaN NaN NaN NaN NaN NaN NaN 76.4 1 70.224 69.724 70.724 -6.1757 0 0 0 0.94165 1 49971 49971 1.3296 0 1 + 30786 23556 20135 20543 36614 36614 0.10993765778789566 LARIVEIY 8 Unmodified _LARIVEIY_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.794677734375 2 488.794935 975.575317 0.30612 0.00014963 -0.25075 -0.00012257 0.055368 2.7063E-05 488.79485072717506 54.302 0.24649 53.836 53.687 53.934 -0.46664 27 12 3 0 0 0 0.50673 1 29394 29394 34.102 1.797 1 7091600 30787 4362 20136 20544 36615 36615 0.0865523482827939 LARKCLHA 8 Unmodified _LARKCLHA_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2659606933594 2 456.265822 910.517091 0.10558 4.8174E-05 -0.6622 -0.00030214 -0.55661 -0.00025396 456.2656222735004 36.073 0.34335 36.098 35.928 36.272 0.024967 42 15 4 0 0 0 0.67481 2 19053 19053;19157 19.439 4.8573 1 39502000 30788 315 20137 20545 36616;36617 36616 0.05825274701999206 LARKCLHA 8 Unmodified _LARKCLHA_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2668151855469 2 456.265822 910.517091 0.30797 0.00014052 -0.19052 -8.6926E-05 0.11746 5.3591E-05 456.26585523872336 39.916 0.37923 35.386 35.203 35.582 -4.5294 68 30 3 0 0 0 0.74163 2 23660 23660;23791 13.508 4.1604 1 92752000 30789 315 20137 20545 36618;36619 36618 0.05825274701999206 LARKIRSDL 9 Unmodified _LARKIRSDL_ 0 0 0 ENSG00000242689|ENST00000361987|CNTF ENSG00000242689|ENST00000361987|CNTF ENSG00000242689|ENST00000361987|CNTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.9564208984375 2 536.33529 1070.65603 0.44537 0.00023887 0.15459 8.2915E-05 0.59996 0.00032178 536.3352372715229 40.533 0.212 40.538 40.402 40.614 0.0050545 14 9 2 0 0 0 0.53557 1 21624 21624 2.0598 0 1 1824300 30790 10700 20138 20546 36620 36620 0.12352515871180003 LARLMIKPPI 10 Unmodified _LARLMIKPPI_ 0 0 0 REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5817565917969 3 384.582617 1150.72602 -0.54125 -0.00020816 -0.98056 -0.00037711 -1.5218 -0.00058526 384.5821511037975 33.275 0.29808 33.275 33.088 33.386 0 38 14 3 0 0 0 0.71123 1 17382 17382 0.69767 0.42865 1 6123600 + 30791 30130 20139 20547 36621 36621 0.1566867821543383 LARLMIKPPI 10 Unmodified _LARLMIKPPI_ 0 0 0 REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2011108398438 3 384.582617 1150.72602 -0.243 -9.3452E-05 -0.42446 -0.00016324 -0.66745 -0.00025669 384.5823663802448 33.47 0.25038 33.311 33.144 33.394 -0.15918 14 9 2 0 0 0 0.24005 1 17425 17425 0.77653 0.77653 1 1984500 + 30792 30130 20139 20547 36622 36622 0.1566867821543383 LARLMIKPPI 10 Unmodified _LARLMIKPPI_ 0 0 0 REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 384.582617 1150.72602 -0.05148 -1.9798E-05 -0.62909 -0.00024194 -0.68057 -0.00026174 384.5823077181424 33.183 0.35987 33.212 32.978 33.338 0.028931 -0.053742 8.8722E-05 NaN 0.77653 51 15 5 NaN NaN NaN NaN 0 NaN NaN 0 31616000 + 30793 30130 20139 20547 0.1566867821543383 LARLRENAL 9 Unmodified _LARLRENAL_ 0 0 0 REV__ENSG00000161920|ENST00000293777|MED11 REV__ENSG00000161920|ENST00000293777|MED11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8842163085938 3 352.548852 1054.62473 1.7971 0.00063356 0.20856 7.3529E-05 2.0056 0.00070709 352.54890448562116 19.8 0.40706 17.144 16.926 17.333 -2.6564 61 25 3 0 0 0 0.10734 1 10462 10462 23.79 0 1 12625000 + 30794 21613 20140 20548 36623 36623 0.09959942837076596 LARLRENAL 9 Unmodified _LARLRENAL_ 0 0 0 REV__ENSG00000161920|ENST00000293777|MED11 REV__ENSG00000161920|ENST00000293777|MED11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8842163085938 3 352.548852 1054.62473 1.7971 0.00063356 0.20856 7.3529E-05 2.0056 0.00070709 352.54890448562116 19.8 0.40706 17.144 16.926 17.333 -2.6564 61 25 3 0 0 0 0.1325 1 10462 10462 23.79 0 1 12625000 + 30795 21613 20140 20548 36624 36624 0.09959942837076596 LARMEMFLF 9 Unmodified _LARMEMFLF_ 0 0 0 ENSG00000186104|ENST00000334636|CYP2R1 ENSG00000186104|ENST00000334636|CYP2R1 ENSG00000186104|ENST00000334636|CYP2R1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.82958984375 2 579.29593 1156.57731 2.7133 0.0015718 0.90234 0.00052272 3.6156 0.0020945 579.2963725563028 96.617 0.41066 96.61 96.388 96.799 -0.007019 33 14 3 0 0 0 0.21242 1 53742 53742 5.2307 0 1 8032400 30796 9452 20141 20549 36625 36625 0.005282042502130935 LARNPSFVL 9 Unmodified _LARNPSFVL_ 0 0 0 ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-4|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7979736328125 2 508.798009 1015.58147 1.0239 0.00052094 -0.78826 -0.00040106 0.23561 0.00011988 508.7978069126467 86.371 1.3193 80.195 79.361 80.681 -6.1757 102 72 2 0 0 0 0.047196 1 56828 56828 46.021 3.9264 1 22465000 30797 7899 20142 20550 36626 36626 0.07429753059807354 LARNYIWAL 9 Unmodified _LARNYIWAL_ 0 0 0 ENSG00000123307|ENST00000242994|NEUROD4 ENSG00000123307|ENST00000242994|NEUROD4 ENSG00000123307|ENST00000242994|NEUROD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.320068359375 2 560.319109 1118.62366 3.9263 0.0022 -1.0105 -0.00056622 2.9157 0.0016337 560.3185402367974 98.078 0.28077 98.06 97.9 98.181 -0.018188 29 9 4 0 0 0 0.047788 1 54473 54473 60.39 0 1 13415000 30798 3695 20143 20551 36627 36627 0.06909728468167486 LARPALLLL 9 Unmodified _LARPALLLL_ 0 0 0 ENSG00000184232|ENST00000328965|OAF ENSG00000184232|ENST00000328965|OAF ENSG00000184232|ENST00000328965|OAF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.3374328613281 2 490.33677 978.658987 1.2002 0.00058849 -0.18529 -9.0853E-05 1.0149 0.00049764 490.336617532727 100.21 0.21826 94.036 93.938 94.157 -6.1757 46 12 5 0 0 0 0.06187 1 66930 66930 42.095 2.1372 1 1273900000 30799 9234 20144 20552 36628 36628 0.16880390996004735 LARPGFHV 8 Unmodified _LARPGFHV_ 0 0 0 MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.759033203125 2 448.758687 895.502821 0.83182 0.00037329 0.41586 0.00018662 1.2477 0.00055991 448.75885551229226 69.414 0.56003 69.445 69.051 69.611 0.030914 56 30 2 0 0 0 0.80624 1 38210 38210 2.8892 0 1 15212000 30800 15996 20145 20553 36629 36629 0.05088945545378465 LARPLVLAL 9 Unmodified _LARPLVLAL_ 0 0 0 ENST00000509913.1_1_5:133295698-133304275:-|nuORF;ENSG00000113583|ENST00000231512|C5orf15 ENST00000509913.1_1_5:133295698-133304275:-|nuORF ENST00000509913.1_1_5:133295698-133304275:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 483.7496948242188 2 483.328945 964.643337 0.44128 0.00021328 -0.066979 -3.2373E-05 0.3743 0.00018091 483.3287586604326 99.724 0.11411 93.549 93.474 93.588 -6.1757 9 6 2 0 0 0 0.17275 1 66460 66460 15.847 4.2069 1 17877000 30801 2978 20146 20554 36630 36630 0.15960104478915582 LARPTGFI 8 Unmodified _LARPTGFI_ 0 0 0 nc|ENSG00000214216|Q1A5X6-3|IQCJ;nc|ENSG00000214216|Q1A5X6|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.7611694335938 2 437.760895 873.507237 0.36941 0.00016171 0.52715 0.00023076 0.89656 0.00039248 437.76119088967977 41.095 0.19098 41.093 40.989 41.18 -0.0017929 15 8 2 0 0 0 0.66338 1 21959 21959 20.454 2.3186 1 1791300 30802 16544 20147 20555 36631 36631 0.0654240996829003 LARPTGFI 8 Unmodified _LARPTGFI_ 0 0 0 nc|ENSG00000214216|Q1A5X6-3|IQCJ;nc|ENSG00000214216|Q1A5X6|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ nc|ENSG00000214216|Q1A5X6-3|IQCJ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 437.760895 873.507237 -0.11285 -4.9402E-05 -0.13325 -5.8331E-05 -0.2461 -0.00010773 437.76081375794695 41.411 0.22782 41.108 40.986 41.214 -0.30304 -0.059615 -0.00019428 NaN 20.454 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3542600 30803 16544 20147 20555 0.0654240996829003 LARQREQEARL 11 Unmodified _LARQREQEARL_ 0 0 0 ENST00000537218.1_1_12:110338138-110342619:+|nuORF;ENSG00000139437|ENST00000405876|TCHP ENST00000537218.1_1_12:110338138-110342619:+|nuORF ENST00000537218.1_1_12:110338138-110342619:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.7328491210938 3 457.260141 1368.75859 1.05 0.00048012 -0.47554 -0.00021745 0.57444 0.00026267 457.2591899774675 34.961 0.32368 30.866 30.668 30.991 -4.0951 24 18 2 0 0 0 0.30551 1 20135 20135 2.6312 0 1 13415000 30804 5157 20148 20556 36632 36632 0.08896556871991379 LARSYQSLK 9 Unmodified _LARSYQSLK_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8750915527344 3 355.873224 1064.59784 1.3336 0.0004746 3.0229 0.0010758 4.3565 0.0015504 355.8746494686032 44.453 0.10356 39.601 39.528 39.632 -4.852 8 6 2 0 0 0 0.52067 1 27147 27147 3.8763 1.1411 1 4196100 30805 8143 20149 20557 36633 36633 0.06812834225888764 LARTPLGF 8 Unmodified _LARTPLGF_ 0 0 0 REV__ENST00000505253.1_1_5:10413496-10422048:+|nuORF REV__ENST00000505253.1_1_5:10413496-10422048:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 437.89111328125 2 437.760895 873.507237 0.62684 0.00027441 -0.35647 -0.00015605 0.27036 0.00011836 437.76085277176986 46.293 0.217 41.301 41.189 41.406 -4.9915 20 14 2 0 0 0 8.7369 1 28590 28590 24.674 6.5389 1 13597000 + 30806 28067 20150 20558 36634 36634 0.0654240996829003 LARTVTLYLF 10 Unmodified _LARTVTLYLF_ 0 0 0 ENST00000304411.2_1_3:71804264-71804414:+|nuORF ENST00000304411.2_1_3:71804264-71804414:+|nuORF ENST00000304411.2_1_3:71804264-71804414:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5724792480469 3 399.572775 1195.69649 0.046962 1.8765E-05 -0.031699 -1.2666E-05 0.015263 6.0988E-06 399.572879477929 42.293 0.17336 42.284 42.227 42.4 -0.0088196 12 7 2 0 0 0 0.34435 1 22656 22656 24.882 5.2556 1 5615000 30807 11604 20151 20559 36635 36635 0.1064743747092507 LARWPCSL 8 Unmodified _LARWPCSL_ 0 0 0 REV__ENST00000319394.7_1_1:27633135-27633324:+|nuORF REV__ENST00000319394.7_1_1:27633135-27633324:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2515258789062 2 473.25238 944.490207 0.27437 0.00012985 -1.3948 -0.00066011 -1.1205 -0.00053026 473.251869361312 87.66 0.32352 87.66 87.488 87.811 0 24 14 2 0 0 0 0.80143 1 48604 48604 5.7604 2.8712 1 734590 + 30808 25495 20152 20560 36636 36636 0.015741660908247468 LARWRCSGSW 10 Unmodified _LARWRCSGSW_ 0 0 0 ENST00000435532.7_1_15:56258725-56285797:-|nuORF ENST00000435532.7_1_15:56258725-56285797:-|nuORF ENST00000435532.7_1_15:56258725-56285797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8691101074219 3 407.869708 1220.5873 -0.40881 -0.00016674 -0.28767 -0.00011733 -0.69648 -0.00028407 407.869692636085 22.429 0.38802 22.429 22.245 22.633 0 62 18 4 0 0 0 0.7191 1 11348 11348 0.77653 0 1 10564000 30809 13314 20153 20561 36637 36637 -0.014174717001651516 LASAISEGTVL 11 Unmodified _LASAISEGTVL_ 0 0 0 ENSG00000167967|ENST00000301727|E4F1;ENST00000569796.1_1_16:2285204-2285570:+|nuORF ENSG00000167967|ENST00000301727|E4F1 ENSG00000167967|ENST00000301727|E4F1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8004760742188 2 530.797872 1059.58119 1.324 0.00070276 -0.46074 -0.00024456 0.86324 0.0004582 531.3003069129929 88.138 0.3175 81.962 81.814 82.132 -6.1757 42 17 3 0 0 0 0.28407 1 58121 58121 27.629 4.8925 1 12522000 30810 7687 20154 20562 36638 36638 0.05378288549286481 LASATHRR 8 Unmodified _LASATHRR_ 0 0 0 REV__ENST00000460905.5_1_21:44073904-44153480:+|nuORF REV__ENST00000460905.5_1_21:44073904-44153480:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2633056640625 2 456.262125 910.509697 NaN NaN NaN NaN NaN NaN NaN 61.712 1 61.712 61.212 62.212 0 0 0 0 0.85111 1 34407 34407 20.871 3.9289 1 + 30811 27310 20155 20563 36639 36639 0.05086258425944834 LASDLLTW 8 Unmodified _LASDLLTW_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.4943237304688 1 918.49311 917.485833 -0.26758 -0.00024577 0.093342 8.5734E-05 -0.17424 -0.00016003 918.493155367323 51.993 0.24207 51.993 51.886 52.129 0 17 10 2 0 0 0 0.28079 1 28739 28739 57.471 13.064 1 2627100 30812 1020 20156 20564 36640 36640 0.023789801489101592 LASDLLTW 8 Unmodified _LASDLLTW_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7496337890625 2 459.750193 917.485833 NaN NaN NaN NaN NaN NaN NaN 52.024 1 52.024 51.524 52.524 0 0 0 0 0.53879 1 28772 28772 38.151 5.8457 1 30813 1020 20156 20564 36641 36641 0.023789801489101592 LASDLLTWI 9 Unmodified _LASDLLTWI_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.792236328125 2 516.292225 1030.5699 -0.10111 -5.2204E-05 -1.0088 -0.00052081 -1.1099 -0.00057302 516.2918693536282 51.959 0.23683 51.959 51.842 52.079 0 15 10 2 0 0 0 0.14602 1 28785 28785 28.487 4.4663 1 5059900 30814 1020 20157 20565 36642 36642 0.05583511245822592 LASDLSRVL 9 Unmodified _LASDLSRVL_ 0 0 0 REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF REV__ENST00000257860.8_1_12:49692132-49692414:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2881774902344 2 487.287474 972.560395 NaN NaN NaN NaN NaN NaN NaN 72.141 1 71.665 71.165 72.165 -0.47609 0 0 0 0.61214 1 39478 39478 12.241 0 1 + 30815 24932 20158 20566 36643 36643 0.07301742960294177 LASDTDMFGL 10 Unmodified _LASDTDMFGL_ 0 0 0 REV__nc|ENSG00000174197|Q8IWI9-3|MGA REV__nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.249267578125 2 535.247157 1068.47976 0.53203 0.00028477 2.5016 0.001339 3.0337 0.0016238 535.2490639020492 57.745 0.3471 57.745 57.597 57.944 0 25 15 2 0 0 0 0.42068 1 32136 32136 20.454 0 1 2644100 + 30816 22773 20159 20567 36644 36644 -0.05173906144909779 LASEFQRSF 9 Unmodified _LASEFQRSF_ 0 0 0 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7752685546875 2 542.774731 1083.53491 NaN NaN NaN NaN NaN NaN NaN 36.8 1 36.551 36.051 37.051 -0.2497 0 0 0 0.82015 1 19322 19322 5.2307 0 1 30817 9558 20160 20568 36645 36645 -0.003517315621365924 LASEIVGGRR 10 Unmodified _LASEIVGGRR_ 0 0 0 ENSG00000197561|ENST00000263621|ELANE ENSG00000197561|ENST00000263621|ELANE ENSG00000197561|ENST00000263621|ELANE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.2084655761719 3 353.208607 1056.60399 NaN NaN NaN NaN NaN NaN NaN 21.602 1 21.631 21.131 22.131 0.028357 0 0 0 0.97592 1 10968 10968 1.5923 0 1 30818 9968 20161 20569 36646 36646 0.07795352457424087 LASEKLLPY 9 Unmodified _LASEKLLPY_ 0 0 0 REV__ENSG00000170385|ENST00000367001|SLC30A1 REV__ENSG00000170385|ENST00000367001|SLC30A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.3015747070312 2 517.30005 1032.58555 0.62343 0.0003225 0.25932 0.00013415 0.88276 0.00045665 517.300289906824 60.696 0.34838 60.696 60.514 60.863 0 35 14 3 0 0 0 0.06187 1 33794 33794 42.095 15.211 1 3562700 + 30819 22477 20162 20570 36647 36647 0.07055797762882321 LASELSFDF 9 Unmodified _LASELSFDF_ 0 0 0 ENSG00000012983|ENST00000682126|MAP4K5;ENST00000554990.5_1_14:50886739-50915587:-|nuORF ENSG00000012983|ENST00000682126|MAP4K5 ENSG00000012983|ENST00000682126|MAP4K5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7486572265625 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 60.111 1 60.058 59.558 60.558 -0.053062 0 0 0 0.82396 1 32779 32779 4.756 0 1 30820 467 20163 20571 36648 36648 -0.02641644921891384 LASGAPPHH 9 Unmodified _LASGAPPHH_ 0 0 0 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.730224609375 2 443.730126 885.4457 -0.31147 -0.00013821 1.4194 0.00062982 1.1079 0.00049162 443.73075733411673 34.452 0.13755 34.261 34.174 34.312 -0.19131 7 5 2 0 0 0 0.37804 1 18011 18011 13.508 0.97634 1 3310100 + 30821 24258 20164 20572 36649 36649 -0.001605217310043372 LASGAPPHH 9 Unmodified _LASGAPPHH_ 0 0 0 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.730126 885.4457 -0.31147 -0.00013821 1.4194 0.00062982 1.1079 0.00049162 443.73075733411673 34.452 0.13755 34.261 34.174 34.312 -0.19131 0 0 NaN 13.508 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3310100 + 30822 24258 20164 20572 -0.001605217310043372 LASGASGG 8 Unmodified _LASGASGG_ 0 0 0 ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1 ENSG00000213088|ENST00000368122|ACKR1 ENSG00000213088|ENST00000368122|ACKR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.305908203125 1 619.304581 618.297304 0.46784 0.00028974 3.9732 0.0024606 4.4411 0.0027504 619.3072421507131 93.075 0.27716 92.618 92.473 92.75 -0.4574 22 14 2 0 0 0 0.80232 1 50845 50845 5.2307 0 1 768650 30823 10420 20165 20573 36650 36650 -0.02711252704693834 LASGFVLAL 9 Unmodified _LASGFVLAL_ 0 0 0 REV__nc|ENSG00000147256|Q6ZRI8-3|ARHGAP36 REV__nc|ENSG00000147256|Q6ZRI8-3|ARHGAP36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 890.5367431640625 1 890.534581 889.527304 0.20269 0.0001805 1.6517 0.0014709 1.8544 0.0016514 890.5356300722276 99.158 0.24947 92.982 92.894 93.144 -6.1757 23 14 2 0 0 0 0.023164 1 65937 65937 60.39 0 1 64225000 + 30824 20879 20166 20574 36651 36651 0.07812160908224541 LASGPDPAF 9 Unmodified _LASGPDPAF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.43310546875 1 874.430509 873.423233 0.83628 0.00073127 -0.59496 -0.00052025 0.24132 0.00021102 874.4299158235692 46.174 0.25636 46.174 46.018 46.274 0 15 11 2 0 0 0 0.0095811 1 25214 25214 81.613 53.126 1 1978300 30825 5216 20167 20575 36652 36652 -0.018541659192806037 LASGSATYSIF 11 Unmodified _LASGSATYSIF_ 0 0 0 REV__ENST00000515237.1_1_4:530517-533155:+|nuORF REV__ENST00000515237.1_1_4:530517-533155:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.3189697265625 2 558.782222 1115.54989 0.81905 0.00045767 -3.4195 -0.0019107 -2.6004 -0.0014531 558.7802178535061 49.709 0.25138 49.709 49.56 49.812 0 17 11 2 0 0 0 0.29414 1 27421 27421 3.2813 0 1 5019400 + 30826 28211 20168 20576 36653 36653 -0.0032628448482228123 LASHEEHR 8 Unmodified _LASHEEHR_ 0 0 0 nc|ENSG00000121104|Q9C073-2|FAM117A;ENSG00000121104|ENST00000240364|FAM117A nc|ENSG00000121104|Q9C073-2|FAM117A nc|ENSG00000121104|Q9C073-2|FAM117A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7409057617188 2 489.741222 977.467892 NaN NaN NaN NaN NaN NaN NaN 16.815 1 16.815 16.315 17.315 0 0 0 0 0.97444 1 8236 8236 0.79363 0 1 30827 3568 20169 20577 36654 36654 -0.021743420532402524 LASIMEEVHT 10 Unmodified _LASIMEEVHT_ 0 0 0 ENST00000510726.1_3_3:141145004-141146592:+|nuORF ENST00000510726.1_3_3:141145004-141146592:+|nuORF ENST00000510726.1_3_3:141145004-141146592:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7479248046875 2 565.281531 1128.54851 0.61188 0.00034589 -2.1243 -0.0012008 -1.5124 -0.00085495 565.280320811709 57.518 0.26202 57.518 57.371 57.633 0 28 12 3 0 0 0 0.20941 1 32061 32061 26.884 0 1 19761000 30828 14592 20170 20578 36655 36655 -0.010622418452385318 LASKEIHQF 9 Unmodified _LASKEIHQF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.1976928710938 3 358.197708 1071.57129 -0.47231 -0.00016918 0.34281 0.0001228 -0.12949 -4.6385E-05 358.1978295894371 25.953 0.26799 25.953 25.799 26.067 0 39 12 4 0 0 0 0.018061 1 13286 13286 65.474 32.029 1 17191000 30829 3108 20171 20579 36656 36656 0.03837145334568959 LASKEIHQF 9 Unmodified _LASKEIHQF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.792236328125 2 536.792924 1071.57129 -0.29255 -0.00015704 -0.69242 -0.00037169 -0.98497 -0.00052872 536.7926874676958 25.944 0.16465 25.944 25.862 26.026 0 13 7 2 0 0 0 0.0084276 1 13317 13317 79.596 47.291 1 1490800 30830 3108 20171 20579 36657 36657 0.03837145334568959 LASKEIHQF 9 Unmodified _LASKEIHQF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1970520019531 3 358.197708 1071.57129 NaN NaN NaN NaN NaN NaN NaN 26.051 1 26.034 25.534 26.534 -0.017006 0 0 0 0.013541 1 13382 13382 87.258 57.821 1 30831 3108 20171 20579 36658 36658 0.03837145334568959 LASKEIHQF 9 Unmodified _LASKEIHQF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5333557128906 3 358.197708 1071.57129 1.4065 0.0005038 -0.62266 -0.00022304 0.78383 0.00028077 358.1974500634852 28.971 0.30308 25.67 25.48 25.783 -3.3016 29 16 3 0 0 0 0.0084276 2 16234 16157;16234 91.085 43.353 1 61076000 30832 3108 20171 20579 36659;36660 36660 0.03837145334568959 LASKEIHQF 9 Unmodified _LASKEIHQF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 358.197708 1071.57129 0.29218 0.00010466 0.48476 0.00017364 0.77695 0.0002783 358.1977651310173 26.033 0.082005 26.016 25.944 26.026 -0.017006 0.13653 0.00035804 NaN 91.085 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 7242000 30833 3108 20171 20579 0.03837145334568959 LASLREPW 8 Unmodified _LASLREPW_ 0 0 0 REV__ENST00000527738.1_1_11:118918433-118918792:-|nuORF REV__ENST00000527738.1_1_11:118918433-118918792:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2693481445312 2 486.269084 970.523616 0.58587 0.00028489 0.14075 6.8442E-05 0.72662 0.00035333 486.26923816890513 48.275 0.33079 47.903 47.771 48.102 -0.37172 29 16 2 0 0 0 0.60622 1 25925 25925 25.399 0 1 2419500 + 30834 20996 20172 20580 36661 36661 0.037174911343640815 LASLSHAIL 9 Unmodified _LASLSHAIL_ 0 0 0 ENSG00000135722|ENST00000258200|FBXL8 ENSG00000135722|ENST00000258200|FBXL8 ENSG00000135722|ENST00000258200|FBXL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7790222167969 2 462.779285 923.544017 0.012533 5.7998E-06 0.60132 0.00027828 0.61385 0.00028408 462.7795743424879 69.03 0.4734 68.549 68.399 68.873 -0.48071 43 20 3 0 0 0 0.078417 1 37710 37710 38.151 0 1 5604500 30835 4735 20173 20581 36662 36662 0.0791866179419003 LASLTGGVLI 10 Unmodified _LASLTGGVLI_ 0 0 0 ENSG00000146411|ENST00000275230|SLC2A12 ENSG00000146411|ENST00000275230|SLC2A12 ENSG00000146411|ENST00000275230|SLC2A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2950134277344 2 472.294768 942.574983 0.55294 0.00026115 -0.13658 -6.4508E-05 0.41635 0.00019664 472.2946618072696 53.683 0.31747 53.231 53.065 53.383 -0.45173 27 15 2 0 0 0 0.013474 1 29013 29013 81.613 5.8522 1 16335000 30836 5776 20174 20582 36663 36663 0.10139815108436778 LASLTGGVLI 10 Unmodified _LASLTGGVLI_ 0 0 0 ENSG00000146411|ENST00000275230|SLC2A12 ENSG00000146411|ENST00000275230|SLC2A12 ENSG00000146411|ENST00000275230|SLC2A12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 472.294768 942.574983 -0.12824 -6.0565E-05 0.76386 0.00036077 0.63563 0.0003002 472.29546225398116 53.308 0.14868 53.245 53.177 53.326 -0.063423 -0.011271 0.0010041 NaN 81.613 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1463100 30837 5776 20174 20582 0.10139815108436778 LASRGPLAAL 10 Unmodified _LASRGPLAAL_ 0 0 0 ENST00000482648.5_1_9:135973742-135973952:-|nuORF ENST00000482648.5_1_9:135973742-135973952:-|nuORF ENST00000482648.5_1_9:135973742-135973952:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7984619140625 2 484.798009 967.581465 0.047052 2.2811E-05 0.45105 0.00021867 0.4981 0.00024148 484.7982440277747 53.404 0.18236 53.341 53.219 53.402 -0.063423 14 8 2 0 0 0 0.48505 1 28958 28958 17.113 3.498 1 2428400 30838 14107 20175 20583 36664 36664 0.09637753059814713 LASRNVESY 9 Unmodified _LASRNVESY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.764404296875 2 519.764363 1037.51417 -0.054561 -2.8359E-05 0.9162 0.00047621 0.86163 0.00044785 519.7650197154142 22.503 0.18708 22.503 22.383 22.57 0 17 8 3 0 0 0 0.033587 1 11448 11448 53.404 21.099 1 1055900 30839 7093 20176 20584 36665 36665 -0.0030832194179311045 LASRNVESY 9 Unmodified _LASRNVESY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 519.764363 1037.51417 -0.088914 -4.6215E-05 1.2048 0.00062624 1.1159 0.00058002 519.7651310928817 25.698 0.24981 22.747 22.538 22.788 -2.9511 0.12205 0.00027869 NaN 53.404 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3320800 30840 7093 20176 20584 -0.0030832194179311045 LASSENATAF 10 Unmodified _LASSENATAF_ 0 0 0 REV__nc|ENSG00000168297|Q7Z7A4-5|PXK REV__nc|ENSG00000168297|Q7Z7A4-5|PXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7441711425781 2 505.743096 1009.47164 1.1237 0.00056833 0.84667 0.0004282 1.9704 0.00099652 505.7436674432882 20.691 0.40405 17.998 17.781 18.186 -2.693 66 25 3 0 0 0 0.14923 2 11061 10957;11061 39.95 7.1043 1 20894000 + 30841 22302 20177 20585 36666;36667 36667 -0.03271717070037994 LASSVIMGFNL 11 Unmodified _LASSVIMGFNL_ 0 0 0 REV__nc|ENSG00000226098|P0C7V7|SEC11B REV__nc|ENSG00000226098|P0C7V7|SEC11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3087768554688 2 576.310092 1150.60563 0.05181 2.9859E-05 -1.6212 -0.00093429 -1.5693 -0.00090443 576.8109703817933 87.249 0.11855 87.307 87.244 87.363 0.058212 7 5 2 0 0 0 0.0069872 1 48502 48502 71.922 18.089 1 12879000 + 30842 29951 20178 20586 36668 36668 0.036352254311623255 LASSVIMGFNL 11 Unmodified _LASSVIMGFNL_ 0 0 0 REV__nc|ENSG00000226098|P0C7V7|SEC11B REV__nc|ENSG00000226098|P0C7V7|SEC11B MSMS AL20221201_MKP_PDAC_01 4 576.309814453125 2 576.310092 1150.60563 NaN NaN NaN NaN NaN NaN NaN 99.105 1 92.929 92.429 93.429 -6.1757 0 0 0 0.057868 1 65903 65903 60.074 6.2411 1 + 30843 29951 20178 20586 36669 36669 0.036352254311623255 LASTLLDAI 9 Unmodified _LASTLLDAI_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2691955566406 2 458.771126 915.527698 0.76988 0.0003532 -2.6005 -0.001193 -1.8306 -0.00083983 458.7712897923936 45.729 0.6411 40.774 40.45 41.091 -4.9549 99 42 3 0 0 0 0.28047 1 28031 28031 18.135 1.1927 1 38034000 30844 8857 20179 20587 36670 36670 0.06655535837421667 LASYLPPV 8 Unmodified _LASYLPPV_ 0 0 0 REV__ENSG00000165832|ENST00000298746|TRUB1 REV__ENSG00000165832|ENST00000298746|TRUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.493408203125 1 859.492381 858.485105 1.4594 0.0012543 -0.67677 -0.00058167 0.78261 0.00067264 859.4920386307913 100.84 0.13332 94.661 94.584 94.717 -6.1757 12 8 2 0 0 0 0.19755 1 67525 67525 70.865 3.8292 1 24367000 + 30845 22056 20180 20588 36671 36671 0.05020185499847685 LATAAALTY 9 Unmodified _LATAAALTY_ 0 0 0 ENST00000427885.1_1_3:47705244-47705421:+|nuORF;ENSG00000146066|ENST00000274787|HIGD2A ENST00000427885.1_1_3:47705244-47705421:+|nuORF ENST00000427885.1_1_3:47705244-47705421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.4929809570312 1 894.49311 893.485833 -0.52555 -0.0004701 0.58027 0.00051904 0.054717 4.8944E-05 894.4937642454532 51.137 0.21722 50.724 50.619 50.836 -0.41351 13 10 2 0 0 0 0.06187 1 27549 27549 42.095 20.348 1 874870 30846 5750 20181 20589 36672 36672 0.03482980148896786 LATCAAIAL 9 Carbamidomethyl (C) _LATC(Carbamidomethyl (C))AAIAL_ LATC(1)AAIAL LATC(42)AAIAL 0 1 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MSMS AL20221201_MKP_PDAC_01 4 452.25146484375 2 452.252046 902.489538 NaN NaN NaN NaN NaN NaN NaN 42.454 1 37.77 37.27 38.27 -4.6846 0 0 0 0.10545 1 25652 25652 42.095 9.9776 1 + 30847 20183 20182 20590 36673 36673 1042 0.034393266511074216 LATEALLAIN 10 Unmodified _LATEALLAIN_ 0 0 0 REV__ENSG00000196455|ENST00000356763|PIK3R4 REV__ENSG00000196455|ENST00000356763|PIK3R4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2771606445312 2 514.802957 1027.59136 0.20278 0.00010439 0.55311 0.00028474 0.75589 0.00038913 514.8032267992766 62.7 0.18999 62.7 62.633 62.823 0 11 7 2 0 0 0 0.21783 1 34980 34980 24.021 7.0783 1 560460 + 30848 23831 20183 20591 36674 36674 0.0786689627452688 LATFRVAL 8 Unmodified _LATFRVAL_ 0 0 0 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.7775573730469 2 445.776545 889.538538 0.83009 0.00037004 0.1207 5.3805E-05 0.95079 0.00042384 445.7765099126449 68.326 0.31485 62.15 61.924 62.239 -6.1757 26 18 2 0 0 0 0.48669 1 44518 44518 36.044 7.5574 1 15719000 + 30849 23916 20184 20592 36675 36675 0.089349830023707 LATFRVAL 8 Unmodified _LATFRVAL_ 0 0 0 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 446.1699523925781 2 445.776545 889.538538 0.83009 0.00037004 0.1207 5.3805E-05 0.95079 0.00042384 445.7765099126449 68.326 0.31485 62.15 61.924 62.239 -6.1757 26 18 2 0 0 0 8.7369 1 44494 44494 18.135 0 1 15719000 + 30850 23916 20184 20592 36676 36676 0.089349830023707 LATFRVAL 8 Unmodified _LATFRVAL_ 0 0 0 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 445.776545 889.538538 0.51427 0.00022925 -0.57427 -0.000256 -0.060003 -2.6748E-05 445.776199308147 62.738 0.1863 62.251 62.12 62.306 -0.48617 0.050675 -0.00054275 NaN 36.044 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1855400 + 30851 23916 20184 20592 0.089349830023707 LATGLCLLWVL 11 Unmodified _LATGLCLLWVL_ 0 0 0 REV__nc|ENSG00000141524|Q7Z403-4|TMC6 REV__nc|ENSG00000141524|Q7Z403-4|TMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2392272949219 3 401.238627 1200.69405 -0.39597 -0.00015888 2.069 0.00083015 1.673 0.00067127 401.23927046961205 31.403 0.57108 31.433 31.272 31.843 0.030106 32 25 2 0 0 0 0.60863 1 16430 16430 10.899 0.74838 1 4477000 + 30852 20542 20185 20593 36677 36677 0.10173265741627802 LATGSSLPQL 10 Unmodified _LATGSSLPQL_ 0 0 0 ENST00000598497.1_1_19:58598487-58598820:-|nuORF;ENST00000596372.1_1_19:58596054-58598820:-|nuORF ENST00000598497.1_1_19:58598487-58598820:-|nuORF ENST00000598497.1_1_19:58598487-58598820:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7806396484375 2 493.779482 985.544411 NaN NaN NaN NaN NaN NaN NaN 49.539 1 49.539 49.039 50.039 0 0 0 0 0.83398 1 27264 27264 10.824 1.4408 1 30853 15763 20186 20594 36678 36678 0.05106036723384477 LATHPHPL 8 Unmodified _LATHPHPL_ 0 0 0 ENST00000570752.5_1_16:2986460-2998725:+|nuORF ENST00000570752.5_1_16:2986460-2998725:+|nuORF ENST00000570752.5_1_16:2986460-2998725:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7778930664062 2 443.250695 884.486836 1.2764 0.00056575 1.0392 0.00046064 2.3156 0.0010264 443.25090633644317 82.745 0.28434 82.807 82.61 82.894 0.061996 16 10 3 0 0 0 8.7369 1 45799 45799 2.5775 0 1 1231300 30854 15481 20187 20595 36679 36679 0.0399723930846676 LATITVMD 8 Unmodified _LATITVMD_ 0 0 0 ENST00000517562.2_1_8:91971138-91971189:-|nuORF ENST00000517562.2_1_8:91971138-91971189:-|nuORF ENST00000517562.2_1_8:91971138-91971189:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.22998046875 2 432.230779 862.447005 0.076837 3.3211E-05 -0.05492 -2.3738E-05 0.021916 9.4729E-06 432.23076664314254 62.037 0.47081 62.037 61.775 62.245 0 43 21 3 0 0 0 0.67481 1 34484 34484 19.439 0 1 4764100 30855 14680 20188 20596 36680 36680 0.01027931522878589 LATNCSLEHL 10 Unmodified _LATNCSLEHL_ 0 0 0 REV__ENSG00000174123|ENST00000308973|TLR10 REV__ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7716064453125 2 550.773874 1099.53319 0.33608 0.0001851 -2.7378 -0.0015079 -2.4017 -0.0013228 550.7711387794615 37.461 0.34676 37.461 37.333 37.68 0 33 18 3 0 0 0 0.60623 1 19932 19932 10.824 1.4765 1 7525600 + 30856 22768 20189 20597 36681 36681 -0.012591086424208697 LATNYYWIL 9 Unmodified _LATNYYWIL_ 0 0 0 ENSG00000160801|ENST00000449590|PTH1R;ENSG00000144407|ENST00000272847|PTH2R ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8057250976562 2 578.8055 1155.59645 NaN NaN NaN NaN NaN NaN NaN 79.485 1 78.996 78.496 79.496 -0.48932 0 0 0 0.70111 1 43536 43536 9.3474 0.60203 1 30857 6757 20190 20598 36682 36682 0.02487200137147738 LATRPTTSGL 10 Unmodified _LATRPTTSGL_ 0 0 0 ENST00000369649.8_1_X:153717326-153718941:-|nuORF;ENST00000263512.5_1_X:153717326-153718904:-|nuORF ENST00000369649.8_1_X:153717326-153718941:-|nuORF ENST00000369649.8_1_X:153717326-153718941:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2667236328125 2 508.790381 1015.56621 NaN NaN NaN NaN NaN NaN NaN 80.164 1 80.164 79.664 80.664 0 0 0 0 0.96627 1 44516 44516 4.3292 0 1 30858 11294 20191 20599 36683 36683 0.059048414719427456 LATRSFLLI 9 Unmodified _LATRSFLLI_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3223876953125 2 517.32386 1032.63317 0.94544 0.0004891 1.2378 0.00064032 2.1832 0.0011294 517.3252067154818 68.725 0.68721 62.549 62.275 62.962 -6.1757 79 38 3 0 0 0 0.20428 1 45060 45060 22.736 2.2827 1 86180000 + 30859 24033 20192 20600 36684 36684 0.11815496753729349 LATSEAWLW 9 Unmodified _LATSEAWLW_ 0 0 0 REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF REV__ENST00000481597.5_1_3:50356335-50357944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2759399414062 2 538.7742 1075.53385 0.25228 0.00013592 -0.50466 -0.0002719 -0.25238 -0.00013598 538.7738664511103 86.932 0.27197 86.932 86.824 87.096 0 26 17 2 0 0 0 0.57331 1 48150 48150 5.2307 0 1 465760 + 30860 17429 20193 20601 36685 36685 -0.0008994593106308457 LATSKYLSF 9 Unmodified _LATSKYLSF_ 0 0 0 ENST00000536207.1_1_12:6861487-6861580:-|nuORF ENST00000536207.1_1_12:6861487-6861580:-|nuORF ENST00000536207.1_1_12:6861487-6861580:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2845458984375 2 515.2844 1028.55425 1.2253 0.00063138 0.12018 6.1927E-05 1.3455 0.00069331 515.2839840927845 64.624 0.51743 58.449 58.167 58.684 -6.1757 62 28 3 0 0 0 0.05447 1 41819 41819 43.858 3.9086 1 62042000 30861 14978 20194 20602 36686 36686 0.04111224728740126 LATSPAVASL 10 Unmodified _LATSPAVASL_ 0 0 0 REV__ENST00000480999.1_1_6:30153415-30153649:-|nuORF REV__ENST00000480999.1_1_6:30153415-30153649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2703552246094 2 465.26875 928.522947 0.73584 0.00034237 -0.5716 -0.00026595 0.16425 7.6419E-05 465.2686130626937 67.537 0.27854 67.537 67.342 67.621 0 26 12 3 0 0 0 0.52888 1 37609 37609 14.838 2.3067 1 2322200 + 30862 27685 20195 20603 36687 36687 0.055826516946467564 LATSPHHHFQQ 11 Unmodified _LATSPHHHFQQ_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.88232421875 3 434.882782 1301.62652 NaN NaN NaN NaN NaN NaN NaN 33.555 1 33.395 32.895 33.895 -0.15918 0 0 0 0.93984 1 17505 17505 2.6312 0.37851 1 + 30863 22553 20196 20604 36688 36688 -0.012230481449705621 LATSQTQLS 9 Unmodified _LATSQTQLS_ 0 0 0 ENST00000439581.1_1_X:108872572-108872794:-|nuORF ENST00000439581.1_1_X:108872572-108872794:-|nuORF ENST00000439581.1_1_X:108872572-108872794:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 949.5078125 1 948.499652 947.492375 0.16553 0.000157 3.1278 0.0029667 3.2933 0.0031237 948.5023116676812 67.849 0.40974 61.673 61.531 61.94 -6.1757 37 23 2 0 0 0 0.41742 1 44172 44172 11.64 0.52583 1 16538000 30864 13377 20197 20605 36689 36689 0.01652873309626557 LATSSPYFG 9 Unmodified _LATSSPYFG_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.455322265625 1 942.456724 941.449448 0.3022 0.00028481 0.021743 2.0492E-05 0.32394 0.0003053 942.4567834268886 49.664 0.21864 49.664 49.536 49.754 0 15 9 2 0 0 0 0.070838 1 27321 27321 39.957 5.8549 1 1780300 30865 7473 20198 20606 36690 36690 -0.023618967478114428 LATTNLLV 8 Unmodified _LATTNLLV_ 0 0 0 nc|ENSG00000135502|Q8NG04-2|SLC26A10P;nc|ENSG00000135502|Q8NG04|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P nc|ENSG00000135502|Q8NG04-2|SLC26A10P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 845.5162353515625 1 844.513845 843.506569 0.047128 3.98E-05 1.7552 0.0014823 1.8023 0.0015221 844.5154524444016 71.94 0.27846 71.464 71.293 71.572 -0.47609 17 10 2 0 0 0 0.80763 1 39422 39422 2.0598 0 1 873500 30866 16207 20199 20607 36691 36691 0.07855570528579392 LATVLDAI 8 Unmodified _LATVLDAI_ 0 0 0 REV__ENSG00000091138|ENST00000340010|SLC26A3 REV__ENSG00000091138|ENST00000340010|SLC26A3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 407.8709106445312 2 408.247286 814.48002 0.75815 0.00030951 -0.42 -0.00017147 0.33814 0.00013805 408.2468185814311 43.753 0.31094 38.988 38.843 39.153 -4.7648 29 19 2 0 0 0 8.7369 1 26527 26527 11.114 0 1 7939000 + 30867 17883 20200 20608 36692 36692 0.0653588163721679 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2666931152344 2 412.765646 823.516739 0.61991 0.00025588 -0.6489 -0.00026784 -0.02899 -1.1966E-05 412.76563617259944 82.448 0.45782 81.953 81.698 82.156 -0.4952 34 18 2 0 0 0 0.028712 2 45090 45090;45187 56.048 10.298 1 1600200 30868 3962 20201 20609 36693;36694 36693 0.09792178253792372 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.5245971679688 1 824.524016 823.516739 0.17113 0.0001411 0.78896 0.00065052 0.96009 0.00079162 824.5245871438972 82.424 0.45782 81.929 81.698 82.156 -0.4952 47 18 3 0 0 0 0.016115 1 45137 45137 67.413 11.365 1 9100100 30869 3962 20201 20609 36695 36695 0.09792178253792372 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 824.5244750976562 1 824.524016 823.516739 2.0505 0.0016906 -0.71119 -0.00058639 1.3393 0.0011043 824.5230536880197 81.861 0.39776 81.921 81.68 82.078 0.059929 26 15 2 0 0 0 0.028712 1 45297 45297 56.048 0 1 13561000 30870 3962 20201 20609 36696 36696 0.09792178253792372 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.5260620117188 1 824.524016 823.516739 1.301 0.0010727 -0.6482 -0.00053446 0.65284 0.00053828 824.5233017328932 89.55 0.65987 83.375 83.042 83.702 -6.1757 82 36 3 0 0 0 0.016115 3 58941 58941;59065;59190 67.413 20.492 1 71515000 30871 3962 20201 20609 36697;36698;36699 36697 0.09792178253792372 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.7659606933594 2 412.765646 823.516739 1.3563 0.00055985 -0.39356 -0.00016245 0.96278 0.0003974 412.7654774882479 89.557 0.61157 83.382 83.058 83.67 -6.1757 73 33 3 0 0 0 0.016115 3 59106 58986;59106;59232 67.413 11.365 1 41035000 30872 3962 20201 20609 36700;36701;36702 36701 0.09792178253792372 LAVAGLPAL 9 Unmodified _LAVAGLPAL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 412.765646 823.516739 1.6822 0.00069434 -0.95632 -0.00039474 0.72584 0.0002996 412.7652382649222 81.862 0.22362 81.922 81.729 81.952 0.059929 -0.015263 -0.00014621 NaN 56.048 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2227700 30873 3962 20201 20609 0.09792178253792372 LAVDGQPDFF 10 Unmodified _LAVDGQPDFF_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7698974609375 2 554.769114 1107.52368 0.33809 0.00018756 0.58545 0.00032479 0.92354 0.00051235 554.769039616949 77.677 0.35475 77.729 77.534 77.889 0.051826 23 14 2 0 0 0 0.35903 1 42847 42847 24.021 1.2843 1 6571000 + 30874 23079 20202 20610 36703 36703 -0.02578553656303484 LAVDGQPDFF 10 Unmodified _LAVDGQPDFF_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.769114 1107.52368 0.33809 0.00018756 0.58545 0.00032479 0.92354 0.00051235 554.769039616949 77.677 0.35475 77.729 77.534 77.889 0.051826 0.010616 -0.0011754 NaN 24.021 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6571000 + 30875 23079 20202 20610 -0.02578553656303484 LAVDLIEKY 9 Unmodified _LAVDLIEKY_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3055419921875 2 532.305332 1062.59611 0.55461 0.00029522 0.35658 0.00018981 0.9112 0.00048504 532.3051498470577 60.942 0.25864 60.942 60.811 61.069 0 29 10 4 0 0 0 0.076472 1 33994 33994 38.615 10.442 1 1225800 30876 1133 20203 20611 36704 36704 0.0673178041729443 LAVENLPSL 9 Unmodified _LAVENLPSL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2751770019531 2 478.276575 954.538597 0.72019 0.00034445 -2.6211 -0.0012536 -1.9009 -0.00090915 478.2764845754466 72.404 0.24854 71.928 71.793 72.041 -0.47609 19 11 2 0 0 0 0.10734 1 39623 39623 32.305 5.4218 1 1286900 30877 3945 20204 20612 36705 36705 0.0595093821170849 LAVETKNFSG 10 Unmodified _LAVETKNFSG_ 0 0 0 ENSG00000073969|ENST00000398238|NSF;nc|ENSG00000073969|P46459-2|NSF ENSG00000073969|ENST00000398238|NSF ENSG00000073969|ENST00000398238|NSF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7902221679688 2 533.282389 1064.55022 -0.12261 -6.5385E-05 -0.14868 -7.929E-05 -0.27129 -0.00014467 533.2825201354287 44.64 0.13888 44.64 44.591 44.73 0 14 7 2 0 0 0 0.23162 1 24298 24298 12.241 1.4167 1 32151000 30878 1118 20205 20613 36706 36706 0.020531352350417365 LAVFVIYKFK 10 Unmodified _LAVFVIYKFK_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;ENST00000473866.1_1_10:108338843-108339191:-|nuORF nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.378173828125 2 614.378635 1226.74272 NaN NaN NaN NaN NaN NaN NaN 102.26 1 102.22 101.72 102.72 -0.045853 0 0 0 1.0019 1 56804 56804 0.45834 0 1 30879 16109 20206 20614 36707 36707 0.13841502373020376 LAVGLQPTV 9 Unmodified _LAVGLQPTV_ 0 0 0 ENSG00000165794|ENST00000298681|SLC39A2 ENSG00000165794|ENST00000298681|SLC39A2 ENSG00000165794|ENST00000298681|SLC39A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 897.5435180664062 1 897.540394 896.533118 -0.15111 -0.00013563 1.2795 0.0011484 1.1284 0.0010128 897.5412708651361 79.138 0.29352 78.652 78.506 78.799 -0.48596 23 12 2 0 0 0 0.28047 1 43397 43397 18.135 1.1927 1 1306500 30880 7386 20207 20615 36708 36708 0.08071259419909893 LAVHKETY 8 Unmodified _LAVHKETY_ 0 0 0 REV__ENST00000542527.6_1_16:22092504-22092690:+|nuORF REV__ENST00000542527.6_1_16:22092504-22092690:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2148132324219 2 480.761092 959.507631 -0.20075 -9.6514E-05 0.75945 0.00036512 0.5587 0.0002686 480.7610797476855 24.58 0.27118 24.58 24.426 24.697 0 41 15 3 0 0 0 8.7369 1 12512 12512 2.3027 0 1 42162000 + 30881 28619 20208 20616 36709 36709 0.02625784897475114 LAVIFECL 8 Unmodified _LAVIFECL_ 0 0 0 ENST00000307834.9_1_2:192550851-192550968:+|nuORF ENST00000307834.9_1_2:192550851-192550968:+|nuORF ENST00000307834.9_1_2:192550851-192550968:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2520751953125 2 454.251514 906.488476 NaN NaN NaN NaN NaN NaN NaN 80.153 1 79.664 79.164 80.164 -0.48932 0 0 0 0.94749 1 43900 43900 11.114 4.7604 1 30882 11645 20209 20617 36710 36710 0.03149112282198985 LAVLQLLQ 8 Unmodified _LAVLQLLQ_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2928466796875 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.80992 1 71496 71496 0.69038 0 1 16154000 + 30883 20883 20210 20618 36711 36711 0.11708136316622131 LAVPDIIDSVL 11 Unmodified _LAVPDIIDSVL_ 0 0 0 REV__nc|ENSG00000080345|Q5UIP0-2|RIF1 REV__nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.3011474609375 2 577.836997 1153.65944 0.80496 0.00046513 -1.8742 -0.001083 -1.0692 -0.00061782 578.3369671482848 66.161 0.56228 59.985 59.594 60.156 -6.1757 39 31 2 0 0 0 0.24542 1 42737 42737 22.736 6.8891 1 14191000 + 30884 17663 20211 20619 36712 36712 0.08875721134518244 LAVPLLVLTPF 11 Unmodified _LAVPLLVLTPF_ 0 0 0 ENST00000491035.5_1_X:153626749-153628283:+|nuORF;ENST00000489200.5_1_X:153626749-153627742:+|nuORF ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENST00000491035.5_1_X:153626749-153628283:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.3472290039062 2 591.878468 1181.74238 0.86733 0.00051336 -4.3035 -0.0025472 -3.4362 -0.0020338 591.8763148236158 100.47 0.10577 94.295 94.254 94.36 -6.1757 8 5 2 0 0 0 0.304 1 67218 67218 3.5965 0.60125 1 11437000 30885 14274 20212 20620 36713 36713 0.1587808265314834 LAVQGLEVF 9 Unmodified _LAVQGLEVF_ 0 0 0 REV__ENST00000459963.5_1_1:160321502-160323118:+|nuORF REV__ENST00000459963.5_1_1:160321502-160323118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2793884277344 2 488.279118 974.543683 0.22244 0.00010861 1.3825 0.00067502 1.6049 0.00078364 488.2798215575104 88.389 0.34416 88.389 88.163 88.507 0 29 16 2 0 0 0 0.58466 1 48972 48972 2.3027 0 1 615380 + 30886 21684 20213 20621 36714 36714 0.055392420743373805 LAVQQKQEK 9 Unmodified _LAVQQKQEK_ 0 0 0 ENSG00000072864|ENST00000396354|NDE1;nc|ENSG00000072864|Q9NXR1-1|NDE1 ENSG00000072864|ENST00000396354|NDE1 ENSG00000072864|ENST00000396354|NDE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.22265625 3 357.876746 1070.60841 -0.33591 -0.00012021 0.94611 0.00033859 0.6102 0.00021838 357.877263381339 23.945 0.20484 23.945 23.811 24.016 0 25 9 4 0 0 0 0.21889 1 12170 12170 0.26902 0 1 2523400 30887 1096 20214 20622 36715 36715 0.07592816880332975 LAVTRPHF 8 Unmodified _LAVTRPHF_ 0 0 0 REV__ENSG00000066735|ENST00000423312|KIF26A REV__ENSG00000066735|ENST00000423312|KIF26A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7719116210938 2 470.771794 939.529036 0.38451 0.00018101 1.7312 0.00081498 2.1157 0.000996 470.7722648084294 68.317 0.51422 68.342 68.148 68.662 0.025146 55 25 3 0 0 0 0.77186 1 37493 37493 10.824 5.0635 1 6149500 + 30888 17406 20215 20623 36716 36716 0.05685214716845621 LAVVAGVAAE 10 Unmodified _LAVVAGVAAE_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2642211914062 2 450.263468 898.512382 1.0914 0.00049143 0.17634 7.9399E-05 1.2678 0.00057083 450.26349035851604 60.213 0.438 54.098 53.852 54.29 -6.1147 51 22 3 0 0 0 0.02544 1 38775 38775 70.716 6.4792 1 57693000 30889 9064 20216 20624 36717 36717 0.05906669040234647 LAVVASLF 8 Unmodified _LAVVASLF_ 0 0 0 ENST00000337190.6_1_4:2250914-2251127:-|nuORF ENST00000337190.6_1_4:2250914-2251127:-|nuORF ENST00000337190.6_1_4:2250914-2251127:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.251708984375 2 410.252372 818.49019 -0.016232 -6.6593E-06 -1.0823 -0.00044402 -1.0985 -0.00045068 410.252110796268 28.089 0.25123 28.119 27.985 28.236 0.029564 16 9 2 0 0 0 0.80232 1 14604 14604 5.2307 0 1 8215700 30890 11921 20217 20625 36718 36718 0.0736848936246588 LAVVVSTEF 9 Unmodified _LAVVVSTEF_ 0 0 0 REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF REV__ENST00000537992.5_1_7:20449736-20449868:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2408752441406 2 482.771126 963.527698 0.62358 0.00030105 -0.90394 -0.0004364 -0.28036 -0.00013535 482.77129947314796 75.856 0.27002 75.379 75.235 75.505 -0.47714 22 11 3 0 0 0 0.21367 1 41586 41586 4.756 1.8668 1 784050 + 30891 28556 20218 20626 36719 36719 0.04447535837448413 LAVYKSPEY 9 Unmodified _LAVYKSPEY_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2832641601562 2 535.281857 1068.54916 0.44726 0.00023941 0.49943 0.00026734 0.94669 0.00050674 535.2820058757491 84.595 0.63269 84.096 83.645 84.278 -0.49961 47 28 2 0 0 0 0.58466 1 46106 46106 2.3027 0 1 4606600 30892 1191 20219 20627 36720 36720 0.017629208661446683 LAVYYRGG 8 Unmodified _LAVYYRGG_ 0 0 0 ENSG00000107566|ENST00000421367|ERLIN1 ENSG00000107566|ENST00000421367|ERLIN1 ENSG00000107566|ENST00000421367|ERLIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7427062988281 2 449.742702 897.470852 -0.08189 -3.683E-05 0.6935 0.0003119 0.61161 0.00027507 449.74291556755105 38.78 0.20265 38.493 38.382 38.585 -0.28687 19 9 3 0 0 0 0.72953 1 20424 20424 14.582 0 1 3225800 30893 2502 20220 20628 36721 36721 0.018015330715684286 LAWASVLTLH 10 Unmodified _LAWASVLTLH_ 0 0 0 ENST00000518928.1_1_8:143381726-143407541:-|nuORF ENST00000518928.1_1_8:143381726-143407541:-|nuORF ENST00000518928.1_1_8:143381726-143407541:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.8963928222656 3 370.88172 1109.62333 -0.27665 -0.0001026 0.60681 0.00022505 0.33016 0.00012245 370.8820104408024 31.615 0.2306 31.645 31.522 31.753 0.030106 23 10 3 0 0 0 0.23986 1 16523 16523 2.086 0.89267 1 4323400 30894 14697 20221 20629 36722 36722 0.0729030874831551 LAWFFVKTF 9 Unmodified _LAWFFVKTF_ 0 0 0 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 REV__nc|ENSG00000140798|Q96J65-5|ABCC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.88330078125 3 386.883061 1157.62735 0.12131 4.6934E-05 0.7162 0.00027709 0.83752 0.00032402 386.8843852380887 51.833 0.35108 51.774 51.632 51.983 -0.058918 22 16 2 0 0 0 0.52844 1 28082 28082 5.7319 2.1448 1 1404900 + 30895 20494 20222 20630 36723 36723 0.054843982420152315 LAWLDEHTL 9 Unmodified _LAWLDEHTL_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2852783203125 2 549.284931 1096.55531 0.54264 0.00029806 -1.2181 -0.00066907 -0.67544 -0.00037101 549.2839710928963 66.825 0.3848 66.825 66.679 67.064 0 44 17 3 0 0 0 0.0095811 1 37262 37262 81.613 33.267 1 5679900 30896 1052 20223 20631 36724 36724 0.010894390976773138 LAWLDEHTL 9 Unmodified _LAWLDEHTL_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.283935546875 2 549.284931 1096.55531 0.40804 0.00022413 0.61588 0.00033829 1.0239 0.00056242 549.2850431782269 67.257 0.39636 66.774 66.634 67.031 -0.48218 55 17 5 0 0 0 0.0082281 2 36717 36717;36813 92.822 58.72 1 11435000 30897 1052 20223 20631 36725;36726 36725 0.010894390976773138 LAWLDEHTL 9 Unmodified _LAWLDEHTL_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2855834960938 2 549.284931 1096.55531 0.82521 0.00045328 0.08263 4.5387E-05 0.90784 0.00049866 549.2850313586808 75.104 1.0317 68.928 68.416 69.448 -6.1757 135 55 3 0 0 0 0.038285 1 49408 49408 50.855 12.679 1 103760000 30898 1052 20223 20631 36727 36727 0.010894390976773138 LAWLDEHTL 9 Unmodified _LAWLDEHTL_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1 ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 549.284931 1096.55531 0.7821 0.0004296 -2.7015 -0.0014839 -1.9194 -0.0010543 549.2833546670947 66.768 0.24632 66.777 66.684 66.931 0.0095596 -0.014961 -0.0029624 NaN 92.822 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3269700 30899 1052 20223 20631 0.010894390976773138 LAWLVFYY 8 Unmodified _LAWLVFYY_ 0 0 0 ENST00000515057.1_1_4:141865852-141889013:-|nuORF;nc|ENSG00000170153|Q9ULK6-4|RNF150;nc|ENSG00000170153|Q9ULK6-3|RNF150;ENSG00000170153|ENST00000515673|RNF150 ENST00000515057.1_1_4:141865852-141889013:-|nuORF ENST00000515057.1_1_4:141865852-141889013:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2418212890625 2 537.786579 1073.5586 0.93433 0.00050247 -0.66994 -0.00036028 0.26439 0.00014219 538.2868534945226 59.316 0.049622 53.242 53.21 53.26 -6.0745 4 2 2 0 0 0 8.7369 1 38066 38066 17.087 2.5049 1 9268100 30900 7953 20224 20632 36728 36728 0.02476733942330611 LAWPQETTL 9 Unmodified _LAWPQETTL_ 0 0 0 ENST00000393276.7_2_1:115168692-115212657:-|nuORF ENST00000393276.7_2_1:115168692-115212657:-|nuORF ENST00000393276.7_2_1:115168692-115212657:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7789916992188 2 529.779482 1057.54441 0.37583 0.00019911 0.53649 0.00028422 0.91232 0.00048333 529.7796734458158 84.431 0.36411 84.431 84.225 84.589 0 47 16 4 0 0 0 0.58466 1 46736 46736 2.3027 0 1 2741500 30901 12701 20225 20633 36729 36729 0.017940367233904908 LAWPTVGKGDP 11 Unmodified _LAWPTVGKGDP_ 0 0 0 ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF ENST00000491221.1_1_19:19762333-19764718:-|nuORF ENST00000491221.1_1_19:19762333-19764718:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8738403320312 3 380.873113 1139.59751 -0.25122 -9.5682E-05 1.1862 0.00045178 0.93495 0.0003561 380.87385075615066 33.76 0.21844 33.601 33.507 33.726 -0.15919 17 8 3 0 0 0 0.7326 1 17676 17676 0.40827 0 1 1055500 30902 13841 20226 20634 36730 36730 0.0332941450603812 LAWSKDINAY 10 Unmodified _LAWSKDINAY_ 0 0 0 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8042602539062 2 590.803488 1179.59242 0.3381 0.00019975 0.15 8.8619E-05 0.4881 0.00028837 590.8039068637751 50.999 0.23937 50.586 50.459 50.698 -0.41351 16 11 2 0 0 0 0.42143 1 27499 27499 20.415 6.5085 1 1412800 30903 3318 20227 20635 36731 36731 0.009811106434199246 LAWVWCPL 8 Unmodified _LAWVWCPL_ 0 0 0 ENST00000539112.5_1_15:102194787-102197157:-|nuORF ENST00000539112.5_1_15:102194787-102197157:-|nuORF ENST00000539112.5_1_15:102194787-102197157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2599487304688 2 494.259674 986.504795 0.099164 4.9013E-05 0.15074 7.4503E-05 0.2499 0.00012352 494.2601761696698 51.601 0.20237 51.168 51.026 51.228 -0.43367 17 10 2 0 0 0 0.5245 1 27846 27846 32.454 0.33667 1 2660300 30904 15017 20228 20636 36732 36732 0.011002382389619925 LAYARQLAQY 10 Unmodified _LAYARQLAQY_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8247680664062 2 598.824755 1195.63496 0.65553 0.00039255 -0.54749 -0.00032785 0.10804 6.4697E-05 598.8242195075899 57.71 0.45211 57.644 57.458 57.91 -0.066036 55 22 4 0 0 0 0.63399 1 31465 31465 9.3831 0.63772 1 15969000 + 30905 22907 20229 20637 36733 36733 0.04496505771635384 LAYDVVWEN 9 Unmodified _LAYDVVWEN_ 0 0 0 REV__nc|ENSG00000111641|P46087-3|NOP2 REV__nc|ENSG00000111641|P46087-3|NOP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7699584960938 2 554.769114 1107.52368 -0.34172 -0.00018958 2.0705 0.0011486 1.7288 0.00095907 554.7697383183923 78.192 0.43729 77.708 77.492 77.929 -0.48438 68 23 5 0 0 0 0.2143 1 42848 42848 21.747 4.6338 1 25566000 + 30906 18758 20230 20638 36734 36734 -0.025785536562807465 LAYFNDIAV 9 Unmodified _LAYFNDIAV_ 0 0 0 ENSG00000121579|ENST00000240922|NAA50 ENSG00000121579|ENST00000240922|NAA50 ENSG00000121579|ENST00000240922|NAA50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2691650390625 2 513.26875 1024.52295 0.47553 0.00024408 -0.19425 -9.9702E-05 0.28128 0.00014437 513.2686850300408 74.46 0.44099 74.46 74.252 74.693 0 37 19 3 0 0 0 0.53666 1 41500 41500 5.2307 0 1 2091200 30907 3589 20231 20639 36735 36735 0.011666516946434058 LAYGLDKSKD 10 Unmodified _LAYGLDKSKD_ 0 0 0 ENST00000432228.1_1_2:222826463-222827672:+|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF ENST00000432228.1_1_2:222826463-222827672:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.29638671875 2 555.295496 1108.57644 0.4252 0.00023611 0.63012 0.0003499 1.0553 0.00058601 555.2960208583502 37.584 0.34142 37.584 37.444 37.786 0 46 17 4 0 0 0 0.5905 1 20013 20013 11.64 1.5664 1 15609000 30908 13274 20232 20640 36736 36736 0.026494044065202615 LAYKQYQGRY 10 Unmodified _LAYKQYQGRY_ 0 0 0 REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2 REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.3339233398438 2 645.335487 1288.65642 NaN NaN NaN NaN NaN NaN NaN 76.815 1 76.815 76.315 77.315 0 0 0 0 0.96981 1 42702 42702 3.9444 0.3479 1 + 30909 19907 20233 20641 36737 36737 0.023638908003704273 LAYLAGVL 8 Unmodified _LAYLAGVL_ 0 0 0 PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant;ENSG00000172572|ENST00000359062|PDE3A PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant PDE3A|p.P773Qfs*6|1|0.05|ENSG00000172572|chr12:20646555-20646555|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.252197265625 2 410.252372 818.49019 1.1821 0.00048495 -2.9767 -0.0012212 -1.7947 -0.00073627 410.2511355917225 30.801 0.25948 27.304 27.153 27.413 -3.497 14 11 2 0 0 0 0.76859 1 17433 17433 11.114 0 1 18568000 30910 8233 20234 20642 36738 36738 0.07368489362477249 LAYLSRRL 8 Unmodified _LAYLSRRL_ 0 0 0 REV__nc|ENSG00000130037|P22460-2|KCNA5 REV__nc|ENSG00000130037|P22460-2|KCNA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3056945800781 2 496.306001 990.597449 NaN NaN NaN NaN NaN NaN NaN 55.798 1 55.73 55.23 56.23 -0.068737 0 0 0 0.9706 1 30331 30331 6.3541 0 1 + 30911 19693 20235 20643 36739 36739 0.10177459296698999 LAYPHPHFA 9 Unmodified _LAYPHPHFA_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.18017578125 3 351.51526 1051.52395 1.7199 0.00060456 -0.9373 -0.00032948 0.78258 0.00027509 351.51481933377073 83.54 0.45981 77.364 77.146 77.606 -6.1757 31 23 2 0 0 0 0.21242 1 54997 54997 2.9952 0 1 5623700 30912 4333 20236 20644 36740 36740 0.00024910854244808434 LAYREVAEDIY 11 Unmodified _LAYREVAEDIY_ 0 0 0 ENST00000531925.5_1_19:1789538-1806275:-|nuORF;nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3 ENST00000531925.5_1_19:1789538-1806275:-|nuORF ENST00000531925.5_1_19:1789538-1806275:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 447.8951721191406 3 447.894354 1340.66123 NaN NaN NaN NaN NaN NaN NaN 24.384 1 21.556 21.056 22.056 -2.8273 0 0 0 0.82089 1 13273 13273 11.065 2.7788 1 30913 4195 20237 20645 36741 36741 0.004527301524831273 LAYSEEIPG 9 Unmodified _LAYSEEIPG_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7436218261719 2 489.742565 977.470577 0.6136 0.00030051 0.39326 0.0001926 1.0069 0.0004931 489.74305244652874 53.551 0.20102 53.099 52.984 53.185 -0.45173 14 9 2 0 0 0 0.37804 1 28972 28972 13.508 0.97634 1 2581200 + 30914 17185 20238 20646 36742 36742 -0.01905931438955122 LAYSEEIPG 9 Unmodified _LAYSEEIPG_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.742565 977.470577 0.6136 0.00030051 0.39326 0.0001926 1.0069 0.0004931 489.74305244652874 53.551 0.20102 53.099 52.984 53.185 -0.45173 0.053987 -6.2554E-05 NaN 13.508 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2581200 + 30915 17185 20238 20646 -0.01905931438955122 LAYVNFPITQF 11 Unmodified _LAYVNFPITQF_ 0 0 0 REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF REV__ENST00000509092.5_1_4:55124935-55146696:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.8775024414062 2 656.850438 1311.68632 0.027469 1.8043E-05 0.22649 0.00014877 0.25396 0.00016681 656.8506978133142 99.017 0.11631 92.841 92.778 92.894 -6.1757 18 6 4 0 0 0 0.54321 1 65766 65766 13.042 2.8919 1 45573000 + 30916 20018 20239 20647 36743 36743 0.04294829745686002 LAYVTTIGGTL 11 Unmodified _LAYVTTIGGTL_ 0 0 0 nc|ENSG00000180068|P47883|OR3A4P nc|ENSG00000180068|P47883|OR3A4P nc|ENSG00000180068|P47883|OR3A4P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8243408203125 2 554.816064 1107.61758 NaN NaN NaN NaN NaN NaN NaN 53.306 1 52.854 52.354 53.354 -0.45173 0 0 0 0.32826 1 28839 28839 26.268 0 1 30917 16423 20240 20648 36744 36744 0.06807165446002728 LAYYPQIRT 9 Unmodified _LAYYPQIRT_ 0 0 0 REV__nc|ENSG00000157540|Q13627-4|DYRK1A REV__nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5420532226562 3 375.541475 1123.60259 -0.028804 -1.0817E-05 -0.69004 -0.00025914 -0.71884 -0.00026995 375.54084656583234 39.266 0.24087 38.98 38.861 39.101 -0.28687 24 11 3 0 0 0 0.25681 1 20698 20698 13.615 2.8154 1 8409800 + 30918 21389 20241 20649 36745 36745 0.04573718368669688 LAYYPQIRT 9 Unmodified _LAYYPQIRT_ 0 0 0 REV__nc|ENSG00000157540|Q13627-4|DYRK1A REV__nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.541475 1123.60259 0.32825 0.00012327 0.17387 6.5297E-05 0.50212 0.00018857 375.5415534517491 38.969 0.21211 38.969 38.903 39.115 0 0.022916 0.00041056 NaN 13.615 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 944560 + 30919 21389 20241 20649 0.04573718368669688 LAYYPQIRT 9 Unmodified _LAYYPQIRT_ 0 0 0 REV__nc|ENSG00000157540|Q13627-4|DYRK1A REV__nc|ENSG00000157540|Q13627-4|DYRK1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 375.541475 1123.60259 0.18027 6.7697E-05 0.58952 0.00022139 0.76979 0.00028909 375.87600264762887 38.879 0.10009 38.89 38.82 38.92 0.011452 -0.056093 0.00087884 NaN 13.615 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 863000 + 30920 21389 20241 20649 0.04573718368669688 LCATLSHLAAL 11 Unmodified _LCATLSHLAAL_ 0 0 0 REV__nc|ENSG00000155229|Q96T76-9|MMS19 REV__nc|ENSG00000155229|Q96T76-9|MMS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5422668457031 3 371.542598 1111.60597 0.38998 0.0001449 -0.50806 -0.00018876 -0.11807 -4.3869E-05 371.5422357916336 48.091 0.56603 48.053 47.7 48.266 -0.038643 98 27 5 0 0 0 0.71728 1 25831 25831 2.6312 1.5598 1 35384000 + 30921 21262 20242 20650 36746 36746 0.054626451510102925 LCCCCCGG 8 Unmodified _LCCCCCGG_ 0 0 0 nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 nc|ENSG00000138650|Q9P2E7-2|PCDH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.0985412597656 2 381.099016 760.183479 0.055342 2.1091E-05 0.36601 0.00013949 0.42135 0.00016058 381.09903381072434 102.49 0.32188 102.49 102.29 102.61 0 25 15 2 0 0 0 0.81107 1 56487 56487 0 0 1 1086500 30922 5079 20243 20651 36747 36747 -0.20620589721124816 LCCPKDLAMF 10 Unmodified _LCCPKDLAMF_ 0 0 0 nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF nc|ENSG00000162585|Q6NZ36-2|FAAP20 nc|ENSG00000162585|Q6NZ36-2|FAAP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8468017578125 3 380.846524 1139.51774 0.056751 2.1614E-05 0.89438 0.00034062 0.95113 0.00036224 380.84679850569756 65.805 0.47813 65.805 65.572 66.05 0 80 23 5 0 0 0 0.70951 1 36744 36744 0.77653 0 1 9360100 30923 14198 20244 20652 36748 36748 -0.04643434755485032 LCDDDEDC 8 Unmodified _LCDDDEDC_ 0 0 0 REV__nc|ENSG00000157193|Q14114-2|LRP8 REV__nc|ENSG00000157193|Q14114-2|LRP8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7406921386719 2 464.138958 926.263363 0.62886 0.00029188 -0.60287 -0.00027981 0.025992 1.2064E-05 464.1386178397266 38.018 0.22234 38.018 37.885 38.108 0 18 10 2 0 0 0 8.7369 1 20254 20254 0 0 1 1467100 + 30924 21370 20245 20653 36749 36749 -0.202718300409515 LCDPESDYAP 10 Unmodified _LCDPESDYAP_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2272338867188 2 555.226422 1108.43829 1.2428 0.00069002 -0.59871 -0.00033242 0.64407 0.0003576 555.2262837242524 34.136 0.35793 30.151 29.965 30.323 -3.9853 28 19 2 0 0 0 0.56348 1 19643 19643 13.042 0.80181 1 10405000 30925 1322 20246 20654 36750 36750 -0.11159086904285687 LCDPESDYAP 10 Unmodified _LCDPESDYAP_ 0 0 0 ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S ENSG00000081248|ENST00000362061|CACNA1S MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 555.226422 1108.43829 -0.24437 -0.00013568 -0.20259 -0.00011248 -0.44696 -0.00024816 555.2266119019498 29.983 0.16845 29.983 29.888 30.057 0 -0.083678 0.00029998 NaN 13.042 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 998480 30926 1322 20246 20654 -0.11159086904285687 LCEFPDNDQF 10 Unmodified _LCEFPDNDQF_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8377380371094 3 409.837739 1226.49139 0.75923 0.00031116 -0.83367 -0.00034167 -0.074433 -3.0505E-05 409.8373840919989 42.674 0.17133 42.674 42.565 42.737 0 13 8 2 0 0 0 0.7191 1 23136 23136 0.77653 0 1 2763800 30927 1641 20247 20655 36751 36751 -0.11279709121617998 LCEWGEGEDL 10 Unmodified _LCEWGEGEDL_ 0 0 0 REV__ENST00000227322.7_2_11:116649484-116649634:-|nuORF REV__ENST00000227322.7_2_11:116649484-116649634:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7400512695312 2 575.739696 1149.46484 0.47282 0.00027222 0.82378 0.00047429 1.2966 0.00074651 575.740570945312 68.675 0.23283 68.194 68.076 68.309 -0.48071 16 10 2 0 0 0 0.69377 1 37509 37509 3.5965 1.019 1 1461400 + 30928 24792 20248 20656 36752 36752 -0.1039139801289366 LCFLHDFSY 9 Unmodified _LCFLHDFSY_ 0 0 0 ENST00000237172.11_1_6:76203241-76203376:-|nuORF ENST00000237172.11_1_6:76203241-76203376:-|nuORF ENST00000237172.11_1_6:76203241-76203376:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.1753845214844 3 382.175915 1143.50592 NaN NaN NaN NaN NaN NaN NaN 12.698 1 10.216 9.7156 10.716 -2.482 0 0 0 0.84369 1 6429 6429 1.1933 0 1 30929 11089 20249 20657 36753 36753 -0.060095921827951315 LCFPMGRNVF 10 Unmodified _LCFPMGRNVF_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 592.2908935546875 2 592.291179 1182.56781 NaN NaN NaN NaN NaN NaN NaN 49.526 1 44.129 43.629 44.629 -5.3961 0 0 0 0.61917 1 30951 30951 20.454 0.039092 1 30930 1241 20250 20658 36754 36754 -0.016175640352912524 LCFYYYFYFFE 11 Unmodified _LCFYYYFYFFE_ 0 0 0 ENST00000557252.1_1_12:56743718-56743955:-|nuORF ENST00000557252.1_1_12:56743718-56743955:-|nuORF ENST00000557252.1_1_12:56743718-56743955:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 802.8439331054688 2 802.843964 1603.67338 NaN NaN NaN NaN NaN NaN NaN 56.96 1 56.474 55.974 56.974 -0.48554 0 0 0 0.9435 1 30950 30950 0 0 1 30931 15254 20251 20659 36755 36755 -0.10431369428715698 LCGKRAAP 8 Unmodified _LCGKRAAP_ 0 0 0 ENST00000312521.8_1_3:23986755-23987076:+|nuORF ENST00000312521.8_1_3:23986755-23987076:+|nuORF ENST00000312521.8_1_3:23986755-23987076:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2303161621094 2 408.231448 814.448342 -0.039994 -1.6327E-05 -1.7022 -0.00069488 -1.7422 -0.00071121 408.2306202507797 43.334 0.25475 43.334 43.183 43.438 0 21 12 2 0 0 0 0.80676 1 23501 23501 2.5775 1.7838 1 4695600 30932 11702 20252 20660 36756 36756 0.033696104022851614 LCGKRAAP 8 Unmodified _LCGKRAAP_ 0 0 0 ENST00000312521.8_1_3:23986755-23987076:+|nuORF ENST00000312521.8_1_3:23986755-23987076:+|nuORF ENST00000312521.8_1_3:23986755-23987076:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 408.231448 814.448342 0.25842 0.0001055 -2.4901 -0.0010165 -2.2317 -0.00091105 408.23023975363867 43.19 0.26953 43.174 43.063 43.333 -0.015667 -0.079867 -0.00037463 NaN 2.5775 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 21298000 30933 11702 20252 20660 0.033696104022851614 LCGPGRRTGEE 11 Unmodified _LCGPGRRTGEE_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1925964355469 3 392.192628 1173.55605 -0.64535 -0.0002531 0.84143 0.00033 0.19608 7.6899E-05 392.1929376972882 33.936 0.1863 33.936 33.822 34.009 0 12 8 2 0 0 0 0.70701 1 17859 17859 1.4551 0 1 2833100 + 30934 19438 20253 20661 36757 36757 -0.023780895249046807 LCGTLFHDAR 10 Unmodified _LCGTLFHDAR_ 0 0 0 REV__ENST00000487003.5_1_2:135932989-135933937:+|nuORF REV__ENST00000487003.5_1_2:135932989-135933937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.19189453125 3 378.190447 1131.54951 -0.50864 -0.00019236 2.0845 0.00078835 1.5759 0.00059599 378.1912323132436 56.016 0.17042 55.948 55.866 56.036 -0.068737 13 8 2 0 0 0 0.69385 1 30465 30465 3.5871 2.4773 1 3154400 + 30935 27817 20254 20662 36758 36758 -0.010999826856732398 LCHQQKPRF 9 Unmodified _LCHQQKPRF_ 0 0 0 ENST00000401937.3_1_1:33445851-33446070:+|nuORF ENST00000401937.3_1_1:33445851-33446070:+|nuORF ENST00000401937.3_1_1:33445851-33446070:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2065124511719 3 386.20632 1155.59713 1.2742 0.00049212 -0.25222 -9.7409E-05 1.022 0.00039471 386.20570500032784 84.066 0.68291 77.89 77.472 78.155 -6.1757 55 36 2 0 0 0 0.54444 1 55206 55206 2.7352 0 1 10960000 30936 12886 20255 20663 36759 36759 0.025557163051871612 LCHRTSRF 8 Unmodified _LCHRTSRF_ 0 0 0 ENST00000354393.6_1_10:69866438-69902705:+|nuORF ENST00000354393.6_1_10:69866438-69902705:+|nuORF ENST00000354393.6_1_10:69866438-69902705:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2647399902344 2 510.26381 1018.51307 NaN NaN NaN NaN NaN NaN NaN 17.035 1 17.035 16.535 17.535 0 0 0 0 0.97444 1 8360 8360 0.69038 0 1 30937 12066 20256 20664 36760 36760 0.004551852083068297 LCHTCRWRLWP 11 Unmodified _LCHTCRWRLWP_ 0 0 0 ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF ENST00000589222.5_2_17:59469571-59469784:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 735.868408203125 2 735.865908 1469.71726 NaN NaN NaN NaN NaN NaN NaN 62.506 1 62.506 62.006 63.006 0 0 0 0 0.94181 1 34866 34866 2.9952 1.8019 1 30938 15667 20257 20665 36761 36761 0.001193813073086858 LCIELVSLGH 10 Unmodified _LCIELVSLGH_ 0 0 0 REV__nc|ENSG00000115947|O43929-2|ORC4 REV__nc|ENSG00000115947|O43929-2|ORC4 MSMS AL20221201_MKP_PDAC_01 4 361.8668518066406 3 361.867082 1082.57942 NaN NaN NaN NaN NaN NaN NaN 3.1993 1 0.71738 0.21738 1.2174 -2.482 0 0 0 0.99248 1 1629 1629 0.62683 0 1 + + 30939 16873 20258 20666 36762 36762 0.04142956259670427 LCIFMFVLF 9 Unmodified _LCIFMFVLF_ 0 0 0 ENST00000368850.4_3_6:111498427-111514516:+|nuORF;ENSG00000112394|ENST00000368851|SLC16A10 ENST00000368850.4_3_6:111498427-111514516:+|nuORF ENST00000368850.4_3_6:111498427-111514516:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7987060546875 2 566.800317 1131.58608 NaN NaN NaN NaN NaN NaN NaN 86.419 1 86.419 85.919 86.919 0 0 0 0 0.84369 1 47869 47869 2.3027 0.65011 1 30940 2891 20259 20667 36763 36763 0.02555177886688398 LCLFDLFFL 9 Unmodified _LCLFDLFFL_ 0 0 0 ENST00000423113.5_1_10:33190231-33190324:-|nuORF ENST00000423113.5_1_10:33190231-33190324:-|nuORF ENST00000423113.5_1_10:33190231-33190324:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5368347167969 3 377.536673 1129.58819 -0.33653 -0.00012705 1.0897 0.00041141 0.7532 0.00028436 377.5371795073729 23.01 0.25083 23.01 22.876 23.126 0 27 13 3 0 0 0 0.28047 1 11707 11707 12.241 0 1 1734900 30941 13128 20260 20668 36764 36764 0.02857929896163114 LCLLIKRV 8 Unmodified _LCLLIKRV_ 0 0 0 REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24 REV__nc|ENSG00000162065|Q9ULP9-2|TBC1D24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.6512145996094 2 479.317523 956.620493 NaN NaN NaN NaN NaN NaN NaN 104.14 1 104.09 103.59 104.59 -0.048737 0 0 0 0.97444 1 57824 57824 0.79363 0 1 + 30942 21621 20261 20669 36765 36765 0.14044762089815777 LCMDELHCLL 10 Unmodified _LCMDELHCLL_ 0 0 0 REV__ENSG00000204301|ENST00000375023|NOTCH4 REV__ENSG00000204301|ENST00000375023|NOTCH4 MSMS AL20221201_MKP_PDAC_01 4 397.1848449707031 3 397.185317 1188.53412 NaN NaN NaN NaN NaN NaN NaN 47.268 1 42.187 41.687 42.687 -5.0805 0 0 0 0.97044 1 29320 29320 3.8763 0.28927 1 + 30943 24156 20262 20670 36766 36766 -0.05260353589369515 LCMHHKPFI 9 Unmodified _LCMHHKPFI_ 0 0 0 REV__ENSG00000103599|ENST00000335894|IQCH REV__ENSG00000103599|ENST00000335894|IQCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2881469726562 2 563.28844 1124.56233 0.17548 9.8846E-05 0.83295 0.00046919 1.0084 0.00056804 563.2886434777463 36.465 0.27007 36.487 36.349 36.619 0.021545 28 12 3 0 0 0 0.39863 1 19302 19302 12.532 1.4171 1 6324500 + 30944 18319 20263 20671 36767 36767 0.005027571728760449 LCMKLYKQLH 10 Unmodified _LCMKLYKQLH_ 0 0 0 REV__ENST00000518942.1_1_8:52812321-52859098:+|nuORF REV__ENST00000518942.1_1_8:52812321-52859098:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2353820800781 3 426.235 1275.68317 0.097114 4.1393E-05 0.27529 0.00011734 0.3724 0.00015873 426.23524802939176 17.095 0.16395 17.1 17.029 17.193 0.0050564 28 12 3 0 0 0 0.66569 1 8611 8611 3.5871 0 1 1600100 + 30945 28255 20264 20672 36768 36768 0.056355400957045276 LCPSQTHPL 9 Unmodified _LCPSQTHPL_ 0 0 0 REV__ENST00000525377.6_1_16:3131994-3132123:+|nuORF REV__ENST00000525377.6_1_16:3131994-3132123:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2519226074219 2 498.252577 994.490601 NaN NaN NaN NaN NaN NaN NaN 29.618 1 29.618 29.118 30.118 0 0 0 0 0.50124 1 15348 15348 15.847 0.078963 1 + 30946 28355 20265 20673 36769 36769 -0.006864589799761234 LCQINFSNI 9 Unmodified _LCQINFSNI_ 0 0 0 ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENST00000520079.1_1_8:37996261-37996586:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.1802368164062 3 351.179548 1050.51682 NaN NaN NaN NaN NaN NaN NaN 78.806 1 72.63 72.13 73.13 -6.1757 0 0 0 0.84892 1 51610 51610 0.86438 0 1 30947 14720 20266 20674 36770 36770 -0.00642189808513649 LCQTYFLALTH 11 Unmodified _LCQTYFLALTH_ 0 0 0 REV__ENST00000300851.10_3_16:31102263-31102332:-|nuORF REV__ENST00000300851.10_3_16:31102263-31102332:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5600891113281 3 437.225158 1308.65364 1.4826 0.00064825 -0.023729 -1.0375E-05 1.4589 0.00063787 437.22517663705224 91.922 0.37859 91.953 91.829 92.208 0.03019 32 13 4 0 0 0 0.21511 1 51118 51118 19.987 13.363 1 6832200 + 30948 25313 20267 20675 36771 36771 0.011662993511890818 LCRKWHQDC 9 Unmodified _LCRKWHQDC_ 0 0 0 REV__ENST00000461797.5_2_3:58292052-58296087:+|nuORF REV__ENST00000461797.5_2_3:58292052-58296087:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8513793945312 3 396.851549 1187.53282 NaN NaN NaN NaN NaN NaN NaN 17.625 1 17.625 17.125 18.125 0 0 0 0 0.85798 1 8699 8699 0.23584 0 1 + 30949 27324 20268 20676 36772 36772 -0.05344806843254446 LCRNRKVHF 9 Unmodified _LCRNRKVHF_ 0 0 0 nc|ENSG00000100614|P35813-2|PPM1A;ENSG00000100614|ENST00000395076|PPM1A;nc|ENSG00000100614|P35813-3|PPM1A;ENST00000502740.1_1_8:15664207-15664498:-|nuORF nc|ENSG00000100614|P35813-2|PPM1A nc|ENSG00000100614|P35813-2|PPM1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5542602539062 3 391.553832 1171.63967 1.3782 0.00053962 -0.25802 -0.00010103 1.1201 0.00043859 391.55348391330966 87.035 0.65776 80.86 80.546 81.203 -6.1757 106 35 4 0 0 0 0.4887 1 57269 57269 8.1555 0 1 61821000 30950 1855 20269 20677 36773 36773 0.06071111433448095 LCSNWAHFFD 10 Unmodified _LCSNWAHFFD_ 0 0 0 REV__ENSG00000153093|ENST00000439055|ACOXL REV__ENSG00000153093|ENST00000439055|ACOXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.2664184570312 2 620.266216 1238.51788 0.28699 0.00017801 -1.3447 -0.00083405 -1.0577 -0.00065604 620.2654018571245 62.632 0.34565 62.632 62.454 62.8 0 48 15 4 0 0 0 0.56348 1 34977 34977 13.042 2.2185 1 7084800 + 30951 21150 20270 20678 36774 36774 -0.09183975439600545 LCSNWAHFFD 10 Unmodified _LCSNWAHFFD_ 0 0 0 REV__ENSG00000153093|ENST00000439055|ACOXL REV__ENSG00000153093|ENST00000439055|ACOXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.2659912109375 2 620.266216 1238.51788 0.45281 0.00028087 -0.96851 -0.00060073 -0.5157 -0.00031987 620.2658608681096 63.081 0.28934 62.595 62.44 62.729 -0.48617 34 13 3 0 0 0 0.56348 1 34358 34358 13.042 2.2185 1 4647200 + 30952 21150 20270 20678 36775 36775 -0.09183975439600545 LCSNWAHFFD 10 Unmodified _LCSNWAHFFD_ 0 0 0 REV__ENSG00000153093|ENST00000439055|ACOXL REV__ENSG00000153093|ENST00000439055|ACOXL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 620.266216 1238.51788 0.28699 0.00017801 -1.3447 -0.00083405 -1.0577 -0.00065604 620.2654018571245 62.632 0.34565 62.632 62.454 62.8 0 0.018543 -0.00015741 NaN 13.042 48 15 4 NaN NaN NaN NaN 0 NaN NaN 0 7084800 + 30953 21150 20270 20678 -0.09183975439600545 LCTFYEDL 8 Unmodified _LCTFYEDL_ 0 0 0 REV__ENSG00000204478|ENST00000602960|PRAMEF20 REV__ENSG00000204478|ENST00000602960|PRAMEF20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2244873046875 2 502.225694 1002.43683 NaN NaN NaN NaN NaN NaN NaN 57.4 1 57.4 56.9 57.9 0 0 0 0 0.97444 1 31941 31941 5.2307 0 1 + 30954 24174 20271 20679 36776 36776 -0.06428676202369843 LCTQYGSGFDF 11 Unmodified _LCTQYGSGFDF_ 0 0 0 REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2657470703125 2 619.263339 1236.51212 0.98261 0.0006085 0.85268 0.00052803 1.8353 0.0011365 619.2638562473504 96.246 0.3118 90.071 89.925 90.237 -6.1757 36 18 3 0 0 0 0.16388 1 63730 63730 43.772 11.467 1 21166000 + 30955 20320 20272 20680 36777 36777 -0.09667118741936065 LCTQYGSGFDF 11 Unmodified _LCTQYGSGFDF_ 0 0 0 REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 REV__nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.263427734375 2 619.263339 1236.51212 0.26134 0.00016184 -0.33219 -0.00020572 -0.07085 -4.3875E-05 619.2630002329782 98.702 0.085312 92.526 92.465 92.551 -6.1757 8 5 2 0 0 0 0.25276 1 65509 65509 43.772 18.373 1 19801000 + 30956 20320 20272 20680 36778 36778 -0.09667118741936065 LCVLLAGL 8 Unmodified _LCVLLAGL_ 0 0 0 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 MSMS AL20221201_MKP_PDAC_01 4 401.2490844726562 2 401.248775 800.482997 NaN NaN NaN NaN NaN NaN NaN 105.33 1 99.157 98.657 99.657 -6.1757 0 0 0 0.97444 1 70583 70583 2.8892 0 1 30957 948 20273 20681 36779 36779 0.07477433490407748 LCVNSLEKF 9 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VNSLEKF_ LC(1)VNSLEKF LC(66)VNSLEKF 0 1 0 ENSG00000103811|ENST00000220166|CTSH;ENST00000534038.5_1_15:79224365-79237386:-|nuORF;ENST00000528436.1_1_15:79229817-79237323:-|nuORF ENSG00000103811|ENST00000220166|CTSH ENSG00000103811|ENST00000220166|CTSH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2864990234375 2 555.286617 1108.55868 NaN NaN NaN NaN NaN NaN NaN 44.114 1 44.114 43.614 44.614 0 0 0 0 0.030047 1 23991 23991 66.457 24.617 1 30958 2162 20274 20682 36780 36780 217 0.00874365880008554 LCVSLSPP 8 Carbamidomethyl (C) _LC(Carbamidomethyl (C))VSLSPP_ LC(1)VSLSPP LC(82)VSLSPP 0 1 0 ENST00000377693.4_1_19:46651525-46663958:+|nuORF ENST00000377693.4_1_19:46651525-46663958:+|nuORF ENST00000377693.4_1_19:46651525-46663958:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.4533081054688 1 872.454616 871.447339 0.95996 0.00083752 -1.3686 -0.001194 -0.40859 -0.00035648 872.4541210068084 83.672 0.25887 77.497 77.366 77.625 -6.1757 14 13 2 0 0 0 0.17035 1 55035 55035 81.864 14.829 1 6458900 30959 12527 20275 20683 36781 36781 978 0.006473512427419337 LCWPAHCL 8 Unmodified _LCWPAHCL_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.6487426757812 2 471.719858 941.425164 -0.0092666 -4.3713E-06 1.6787 0.00079188 1.6694 0.00078751 471.7208029393309 45.191 0.21386 45.191 45.075 45.288 0 14 10 2 0 0 0 8.7369 1 24556 24556 6.3541 0 1 3006200 30960 1983 20276 20684 36782 36782 -0.047891517066773304 LCWYLCQMRC 10 Unmodified _LCWYLCQMRC_ 0 0 0 REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.781494140625 2 659.781807 1317.54906 NaN NaN NaN NaN NaN NaN NaN 17.084 1 17.089 16.589 17.589 0.0050564 0 0 0 1.0024 1 8601 8601 0.40072 0 1 + 30961 26015 20277 20685 36783 36783 -0.09701184993036804 LCYCMDCI 8 Unmodified _LCYCMDCI_ 0 0 0 ENST00000579991.2_1_17:56166640-56166793:+|nuORF ENST00000579991.2_1_17:56166640-56166793:+|nuORF ENST00000579991.2_1_17:56166640-56166793:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.1766967773438 2 482.175778 962.337002 -0.2863 -0.00013805 1.0549 0.00050866 0.76863 0.00037062 482.1763060686234 41.453 0.25719 41.453 41.281 41.538 0 23 12 4 0 0 0 0.80676 1 22328 22328 2.5775 0 1 4686700 30962 15555 20278 20686 36784 36784 -0.1456727640381814 LDAAGRRK 8 Unmodified _LDAAGRRK_ 0 0 0 ENST00000329321.3_3_2:133174530-133174578:+|nuORF ENST00000329321.3_3_2:133174530-133174578:+|nuORF ENST00000329321.3_3_2:133174530-133174578:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7648010253906 2 443.764501 885.514448 0.79709 0.00035372 -0.20894 -9.2722E-05 0.58815 0.000261 443.76432498438857 80.794 0.48251 80.302 80.031 80.513 -0.49247 64 20 4 0 0 0 0.80975 1 44342 44342 0.79363 0 1 16478000 30963 11844 20279 20687 36785 36785 0.0671114256869032 LDAAQRNLY 9 Unmodified _LDAAQRNLY_ 0 0 0 nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506 nc|ENSG00000081665|Q5JVG8-2|ZNF506 nc|ENSG00000081665|Q5JVG8-2|ZNF506 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.27978515625 2 532.28018 1062.54581 -0.21941 -0.00011679 1.538 0.00081865 1.3186 0.00070186 532.2798130421415 78.537 0.2561 78.051 77.957 78.213 -0.48596 14 10 2 0 0 0 0.49272 1 43024 43024 7.9102 0 1 563690 30964 1326 20280 20688 36786 36786 0.01703670812139535 LDADNAAN 8 Unmodified _LDADNAAN_ 0 0 0 REV__ENSG00000179796|ENST00000396641|LRRC3B REV__ENSG00000179796|ENST00000396641|LRRC3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1806640625 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 17.308 1 17.308 16.808 17.808 0 0 0 0 0.97444 1 8517 8517 0.79363 0 1 + 30965 23118 20281 20689 36787 36787 -0.06336803855481321 LDAESPAQ 8 Unmodified _LDAESPAQ_ 0 0 0 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 REV__nc|ENSG00000092108|Q8WVM8-2|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.393310546875 1 830.389039 829.381762 0.40728 0.0003382 0.82171 0.00068233 1.229 0.0010205 830.389735949447 49.686 0.26315 49.686 49.51 49.773 0 20 11 2 0 0 0 0.44629 1 27303 27303 39.957 1.9833 1 4104700 + 30966 17904 20282 20690 36788 36788 -0.03975346678612368 LDAGAVYTL 9 Unmodified _LDAGAVYTL_ 0 0 0 nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 nc|ENSG00000144908|O75891-2|ALDH1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4840698242188 1 922.488024 921.480748 0.38452 0.00035471 -0.72127 -0.00066536 -0.33675 -0.00031065 922.4868573805592 58.061 0.26336 58.061 57.891 58.154 0 17 10 2 0 0 0 0.23158 1 32265 32265 20.454 3.5113 1 1394500 30967 5658 20283 20691 36789 36789 0.01686676286283273 LDAGGVLAV 9 Unmodified _LDAGGVLAV_ 0 0 0 REV__ENST00000494435.5_1_21:47965888-47966146:+|nuORF REV__ENST00000494435.5_1_21:47965888-47966146:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 814.467041015625 1 814.466895 813.459619 0.019679 1.6028E-05 1.128 0.00091873 1.1477 0.00093476 814.4677180091346 91.204 0.34238 90.71 90.546 90.889 -0.49457 23 14 2 0 0 0 0.43463 2 49826 49826;49923 10.824 0 1 561280 + 30968 27933 20284 20692 36790;36791 36790 0.04542710977432307 LDAGYFMPNRL 11 Unmodified _LDAGYFMPNRL_ 0 0 0 nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849487304688 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 32.836 1 32.677 32.177 33.177 -0.15918 0 0 0 0.94165 1 17112 17112 1.3296 0.1363 1 30969 930 20285 20693 36792 36792 -0.002748713086020871 LDAGYQVLI 9 Unmodified _LDAGYQVLI_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.5469970703125 1 991.545874 990.538597 -0.0013208 -1.3096E-06 0.28344 0.00028105 0.28212 0.00027974 991.5462375151533 92.58 0.35406 92.58 92.385 92.739 0 40 22 2 0 0 0 0.022193 1 51214 51214 61.357 0.96792 1 1572300 + 30970 18175 20286 20694 36793 36793 0.04294938211717181 LDAGYQVLI 9 Unmodified _LDAGYQVLI_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 991.546875 1 991.545874 990.538597 0.30818 0.00030557 0.5014 0.00049716 0.80958 0.00080274 991.5463712705711 93.041 0.40052 92.584 92.436 92.836 -0.4574 57 21 4 0 0 0 0.0082485 1 50899 50899 96.285 3.4626 1 9356900 + 30971 18175 20286 20694 36794 36794 0.04294938211717181 LDAGYQVLI 9 Unmodified _LDAGYQVLI_ 0 0 0 REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B REV__nc|ENSG00000101445|Q96T49-2|PPP1R16B MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.5425415039062 1 991.545874 990.538597 0.56723 0.00056243 0.033225 3.2944E-05 0.60045 0.00059537 991.5457830971644 99.917 0.18615 93.741 93.652 93.838 -6.1757 35 13 3 0 0 0 0.0083938 1 66635 66635 108 3.1978 1 378890000 + 30972 18175 20286 20694 36795 36795 0.04294938211717181 LDAPAVLR 8 Unmodified _LDAPAVLR_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 854.5094604492188 1 854.509429 853.502152 0.25463 0.00021759 -0.91389 -0.00078093 -0.65926 -0.00056334 854.5083228484565 81.116 0.35011 80.623 80.465 80.815 -0.49247 40 22 2 0 0 0 0.079485 2 44391 44391;44495 108 15.175 1 3604000 + 30973 17649 20287 20695 36796;36797 36796 0.0695410610566114 LDAPAVLR 8 Unmodified _LDAPAVLR_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.5087280273438 1 854.509429 853.502152 0.30863 0.00026372 -1.5655 -0.0013378 -1.2569 -0.001074 854.5076270517594 80.194 0.78405 80.251 80.028 80.812 0.057587 66 36 2 0 0 0 0.055731 4 44474 44256;44360;44474;44596 133.7 16.103 1 45550000 + 30974 17649 20287 20695 36798;36799;36800;36801 36800 0.0695410610566114 LDAPAVLR 8 Unmodified _LDAPAVLR_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.5169067382812 1 854.509429 853.502152 4.2385 0.0036218 0.58986 0.00050404 4.8283 0.0041258 854.5104501635465 98.68 0.26524 98.652 98.481 98.746 -0.028282 15 9 2 0 0 0 0.077523 1 54788 54788 117.6 20.524 1 4384100 + 30975 17649 20287 20695 36802 36802 0.0695410610566114 LDAPAVLR 8 Unmodified _LDAPAVLR_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 854.509429 853.502152 0.25463 0.00021759 -0.91389 -0.00078093 -0.65926 -0.00056334 854.5083228484565 81.116 0.35011 80.623 80.465 80.815 -0.49247 0.18612 0.0002419 NaN 133.7 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 3604000 + 30976 17649 20287 20695 0.0695410610566114 LDAPAVLR 8 Unmodified _LDAPAVLR_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 854.509429 853.502152 0.30863 0.00026372 -1.5655 -0.0013378 -1.2569 -0.001074 854.5076270517594 80.194 0.78405 80.251 80.028 80.812 0.057587 -0.18612 -0.00031493 NaN 133.7 66 36 2 NaN NaN NaN NaN 0 NaN NaN 0 45550000 + 30977 17649 20287 20695 0.0695410610566114 LDAREVIPMA 10 Unmodified _LDAREVIPMA_ 0 0 0 nc|ENSG00000171552|Q07817-2|BCL2L1;nc|ENSG00000171552|Q07817-3|BCL2L1;ENSG00000171552|ENST00000307677|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 nc|ENSG00000171552|Q07817-2|BCL2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7994384765625 2 557.799891 1113.58523 0.49922 0.00027847 0.84042 0.00046879 1.3396 0.00074725 557.8002249007786 75.607 0.40765 75.655 75.389 75.797 0.047943 45 18 3 0 0 0 0.60478 1 41638 41638 17.113 17.113 1 6287000 30978 8114 20288 20696 36803 36803 0.03298054771335046 LDCELQKDY 9 Unmodified _LDCELQKDY_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.28759765625 2 563.757889 1125.50123 0.25954 0.00014632 0.24817 0.00013991 0.50771 0.00028623 563.7582730819139 37.775 0.35635 37.775 37.549 37.905 0 40 17 3 0 0 0 0.18428 1 20110 20110 26.884 16.06 1 3749100 30979 8120 20289 20697 36804 36804 -0.05650521116217533 LDCFFYISVY 10 Unmodified _LDCFFYISVY_ 0 0 0 nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6;nc|ENSG00000063015|Q53EL9-4|SEZ6;nc|ENSG00000063015|Q53EL9-2|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.2958374023438 2 635.29665 1268.57875 0.5003 0.00031784 -2.1895 -0.001391 -1.6892 -0.0010731 635.2953405433722 60.238 0.35885 60.238 60.068 60.427 0 37 15 3 0 0 0 0.52888 2 33562 33562;33669 14.838 4.0143 1 1848600 30980 854 20290 20698 36805;36806 36805 -0.04479883180033539 LDDALYGLL 9 Unmodified _LDDALYGLL_ 0 0 0 REV__ENST00000511430.1_1_4:15780037-15826710:+|nuORF REV__ENST00000511430.1_1_4:15780037-15826710:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5305786132812 1 992.529889 991.522613 -0.010096 -1.0021E-05 -2.9083 -0.0028866 -2.9184 -0.0028966 992.5261089067596 89.096 0.2326 89.096 88.954 89.186 0 17 11 2 0 0 0 0.30562 1 49274 49274 16.942 4.4107 1 765190 + 30981 16945 20291 20699 36807 36807 0.026512319748235313 LDDEDEDV 8 Unmodified _LDDEDEDV_ 0 0 0 REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF;REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.1848754882812 2 475.185277 948.356001 0.73986 0.00035157 -0.91136 -0.00043307 -0.1715 -8.1496E-05 475.1847418530052 62.571 0.38897 62.083 61.872 62.261 -0.48764 34 18 2 0 0 0 0.80143 1 34069 34069 5.7604 0 1 4196100 + 30982 28517;28570 20292 20700 36808 36808 -0.12024285711561333 LDDEDEDV 8 Unmodified _LDDEDEDV_ 0 0 0 REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF;REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 475.185277 948.356001 0.1483 7.0471E-05 0.1981 9.4133E-05 0.3464 0.0001646 475.1846031267425 62.021 0.18624 62.021 61.885 62.072 0 -0.031268 0.0009553 NaN 5.7604 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 515910 + 30983 28517;28570 20292 20700 -0.12024285711561333 LDDEEYYRMEL 11 Unmodified _LDDEEYYRMEL_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.6638488769531 4 369.664429 1474.62861 -0.56194 -0.00020773 -1.6943 -0.00062634 -2.2563 -0.00083407 369.66383638861504 34.858 0.26328 34.858 34.695 34.958 0 33 13 3 0 0 0 0.73237 1 18407 18407 1.2148 0.10508 1 8757000 30984 10371 20293 20701 36809 36809 -0.08971845032715464 LDDFNRIF 8 Unmodified _LDDFNRIF_ 0 0 0 nc|ENSG00000161905|P16050-2|ALOX15;ENSG00000161905|ENST00000293761|ALOX15 nc|ENSG00000161905|P16050-2|ALOX15 nc|ENSG00000161905|P16050-2|ALOX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2638549804688 2 520.263999 1038.51345 0.18355 9.5496E-05 -0.63904 -0.00033247 -0.45549 -0.00023697 520.2636985797917 49.001 0.45362 49.001 48.761 49.215 0 39 21 2 0 0 0 0.55032 1 26953 26953 30.225 1.738 1 11240000 30985 6815 20294 20702 36810 36810 -0.0042711659086762666 LDDIIRHDFF 10 Unmodified _LDDIIRHDFF_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF;ENST00000510629.1_1_5:57752724-57753235:-|nuORF ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8888854980469 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 27.599 1 27.553 27.053 28.053 -0.046408 0 0 0 0.99091 1 14228 14228 0.69767 0.24315 1 30986 5709 20295 20703 36811 36811 0.0072018456346540916 LDDIRGRRH 9 Unmodified _LDDIRGRRH_ 0 0 0 REV__MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant REV__MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8801574707031 3 379.879372 1136.61629 1.4507 0.00055109 -0.39412 -0.00014972 1.0566 0.00040137 379.87920938623824 83.417 1.0618 77.241 76.715 77.777 -6.1757 126 56 3 0 0 0 0.5029 1 54560 54560 4.5289 0 1 24661000 + 30987 18848 20296 20704 36812 36812 0.05344388920457277 LDDITNYYPSY 11 Unmodified _LDDITNYYPSY_ 0 0 0 REV__ENSG00000171403|ENST00000246662|KRT9 REV__ENSG00000171403|ENST00000246662|KRT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 682.3040161132812 2 682.306258 1362.59796 -0.26482 -0.00018069 -1.9013 -0.0012973 -2.1662 -0.001478 682.3043075002937 35.569 0.51542 35.569 35.421 35.937 0 50 25 3 0 0 0 0.56638 1 18894 18894 13.042 1.5478 1 29907000 + + 30988 16853 20297 20705 36813 36813 -0.06883255355432993 LDDITNYYPSY 11 Unmodified _LDDITNYYPSY_ 0 0 0 REV__ENSG00000171403|ENST00000246662|KRT9 REV__ENSG00000171403|ENST00000246662|KRT9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 682.306258 1362.59796 0.11762 8.0255E-05 -2.9946 -0.0020432 -2.877 -0.001963 682.3041655647359 35.515 0.22606 35.54 35.456 35.682 0.024971 -0.033386 -0.00041559 NaN 13.042 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1386200 + + 30989 16853 20297 20705 -0.06883255355432993 LDDKLWDL 8 Unmodified _LDDKLWDL_ 0 0 0 REV__ENST00000561993.5_1_16:8732964-8736423:+|nuORF REV__ENST00000561993.5_1_16:8732964-8736423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2641296386719 2 509.266207 1016.51786 0.50053 0.00025491 -1.6932 -0.00086229 -1.1927 -0.00060738 509.2656076073984 68.173 0.63367 68.173 67.697 68.33 0 39 30 2 0 0 0 0.74163 1 37972 37972 13.508 0 1 1144200 + 30990 17419 20298 20706 36814 36814 0.010263478320553077 LDDKLYQLL 9 Unmodified _LDDKLYQLL_ 0 0 0 ENST00000366479.3_1_1:248201943-248202102:+|nuORF ENST00000366479.3_1_1:248201943-248202102:+|nuORF ENST00000366479.3_1_1:248201943-248202102:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8161010742188 2 560.816064 1119.61758 0.36334 0.00020377 -0.013796 -7.7371E-06 0.34954 0.00019603 560.8161234082493 78.949 0.31301 78.949 78.786 79.099 0 33 14 3 0 0 0 0.49272 1 43823 43823 7.9102 0.62092 1 1470000 30991 12200 20299 20707 36815 36815 0.06255165445986677 LDDLDILNF 9 Unmodified _LDDLDILNF_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2789306640625 2 539.276772 1076.53899 NaN NaN NaN NaN NaN NaN NaN 96.681 1 96.681 96.181 97.181 0 0 0 0 0.82739 1 53429 53429 4.3292 1.44 1 + 30992 19508 20300 20708 36816 36816 0.003783131409136331 LDDLDILNF 9 Unmodified _LDDLDILNF_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.75244140625 2 539.276772 1076.53899 0.39302 0.00021195 1.3076 0.00070517 1.7006 0.00091712 539.2785482088732 68.145 0.33558 68.145 67.953 68.289 0 38 16 3 0 0 0 0.17275 1 38010 38010 21.747 4.8044 1 566030 + 30993 19508 20300 20708 36817 36817 0.003783131409136331 LDDLKDSTNI 10 Unmodified _LDDLKDSTNI_ 0 0 0 REV__nc|ENSG00000272980|O95684-2|CEP43 REV__nc|ENSG00000272980|O95684-2|CEP43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.1944885253906 3 378.527671 1132.56118 0.64944 0.00024583 -2.8947 -0.0010957 -2.2453 -0.00084989 378.5264973086542 14.988 0.087118 12.46 12.424 12.511 -2.5273 23 15 2 0 0 0 0.66569 1 7675 7675 3.5871 0 1 2878200 + 30994 24272 20301 20709 36818 36818 0.00020492818657658063 LDDLTSQRSF 10 Unmodified _LDDLTSQRSF_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.79541015625 2 591.293485 1180.57242 1.185 0.00070066 -0.99032 -0.00058557 0.19464 0.00011509 591.7944961454165 79.574 0.97527 73.398 72.787 73.762 -6.1757 101 56 3 0 0 0 0.57893 1 52352 52352 12.241 0.60036 1 30867000 + 30995 21250 20302 20710 36819 36819 -0.01064685087203543 LDDSESRVKTF 11 Unmodified _LDDSESRVKTF_ 0 0 0 ENST00000302517.7_1_5:139028311-139059991:+|nuORF ENST00000302517.7_1_5:139028311-139059991:+|nuORF ENST00000302517.7_1_5:139028311-139059991:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8849487304688 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 39.474 1 39.486 38.986 39.986 0.011452 0 0 0 0.93984 1 21026 21026 2.6312 0.19645 1 30996 11583 20303 20711 36820 36820 -0.00024744369966356317 LDDSIAIYI 9 Unmodified _LDDSIAIYI_ 0 0 0 ENSG00000206530|ENST00000393845|CFAP44;nc|ENSG00000206530|Q96MT7-1|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 ENSG00000206530|ENST00000393845|CFAP44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7748718261719 2 511.773865 1021.53318 0.99575 0.0005096 -1.6658 -0.0008525 -0.67003 -0.0003429 511.7732785152524 86.155 0.59494 79.98 79.727 80.322 -6.1757 70 32 3 0 0 0 0.038285 1 56813 56813 50.855 0 1 26106000 30997 10400 20304 20712 36821 36821 0.023272146292129037 LDDWDRERYWR 11 Unmodified _LDDWDRERYWR_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.3753662109375 2 805.378946 1608.74334 NaN NaN NaN NaN NaN NaN NaN 96.08 1 95.775 95.275 96.275 -0.30472 0 0 0 0.94301 1 52474 52474 0.35063 0.043601 1 30998 16152 20305 20713 36822 36822 -0.036683547158645524 LDDWNIPSFF 10 Unmodified _LDDWNIPSFF_ 0 0 0 REV__ENSG00000101049|ENST00000373100|SGK2 REV__ENSG00000101049|ENST00000373100|SGK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2940673828125 2 627.295496 1252.57644 0.31567 0.00019802 -0.050303 -3.1555E-05 0.26536 0.00016646 627.2954919378901 86.348 0.7212 85.845 85.42 86.141 -0.50318 60 29 3 0 0 0 0.67459 2 47205 47205;47305 5.7319 0 1 1703400 + 30999 18126 20306 20714 36823;36824 36823 -0.03974595593490449 LDDYSFSCY 9 Unmodified _LDDYSFSCY_ 0 0 0 nc|ENSG00000168685|P16871-4|IL7R;nc|ENSG00000168685|P16871-3|IL7R;nc|ENSG00000168685|P16871-2|IL7R;ENSG00000168685|ENST00000303115|IL7R nc|ENSG00000168685|P16871-4|IL7R nc|ENSG00000168685|P16871-4|IL7R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7142333984375 2 556.71569 1111.41683 NaN NaN NaN NaN NaN NaN NaN 81.959 1 81.959 81.459 82.459 0 0 0 0 0.84369 1 45480 45480 2.3027 0.24298 1 31000 7790 20307 20715 36825 36825 -0.13442471932967237 LDEEPMCRQ 9 Unmodified _LDEEPMCRQ_ 0 0 0 REV__ENST00000577437.1_1_X:151298011-151304248:-|nuORF REV__ENST00000577437.1_1_X:151298011-151304248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2537841796875 2 560.741716 1119.46888 0.96508 0.00054116 3.8023 0.0021321 4.7673 0.0026732 560.740377496943 54.264 0.50196 54.264 54.051 54.553 0 79 22 5 0 0 0 0.49272 1 30252 30252 7.9102 0.62092 1 24642000 + 31001 19436 20308 20716 36826 36826 -0.08607631790846426 LDEFEESNI 9 Unmodified _LDEFEESNI_ 0 0 0 REV__nc|ENSG00000109111|Q7KZ85-2|SUPT6H REV__nc|ENSG00000109111|Q7KZ85-2|SUPT6H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7994995117188 2 548.245669 1094.47678 0.45369 0.00024873 2.0485 0.0011231 2.5022 0.0013718 548.2465279446964 71.602 0.77631 71.125 70.817 71.594 -0.47609 47 31 2 0 0 0 0.20139 1 39345 39345 10.824 2.2306 1 634520 + 31002 18646 20309 20717 36827 36827 -0.06667457998082682 LDEFIHECDF 10 Unmodified _LDEFIHECDF_ 0 0 0 REV__ENSG00000214842|ENST00000399080|RAD51AP2 REV__ENSG00000214842|ENST00000399080|RAD51AP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.2685546875 2 634.268621 1266.52269 NaN NaN NaN NaN NaN NaN NaN 67.02 1 67.02 66.52 67.52 0 0 0 0 0.83398 1 37378 37378 10.824 0.75 1 + 31003 24325 20310 20718 36828 36828 -0.09991136087523955 LDEGVFGTWSG 11 Unmodified _LDEGVFGTWSG_ 0 0 0 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2;REV__nc|ENSG00000182240|Q9Y5Z0-5|BACE2 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7951049804688 2 584.269478 1166.5244 1.1421 0.00066727 1.0487 0.00061272 2.1908 0.00128 584.2704475219005 63.65 0.47396 63.64 63.329 63.803 -0.010532 42 22 3 0 0 0 0.29134 1 34765 34765 8.1555 0.24537 1 11661000 + 31004 29832;23253 20311 20719 36829 36829 -0.052197590072410094 LDEIKQGFNF 10 Unmodified _LDEIKQGFNF_ 0 0 0 ENSG00000165953|ENST00000677451|SERPINA12 ENSG00000165953|ENST00000677451|SERPINA12 ENSG00000165953|ENST00000677451|SERPINA12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8092651367188 2 605.808771 1209.60299 -0.06535 -3.959E-05 1.9188 0.0011624 1.8535 0.0011228 605.8097145976021 78.662 0.30495 78.176 77.99 78.295 -0.48596 22 11 3 0 0 0 0.56348 1 43079 43079 13.042 0 1 782480 31005 7413 20312 20720 36830 36830 0.006570932978547717 LDEIRSDL 8 Unmodified _LDEIRSDL_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7523193359375 2 480.753464 959.492375 -0.14493 -6.9677E-05 -1.9389 -0.00093212 -2.0838 -0.0010018 480.7523667546218 23.721 0.36938 23.721 23.605 23.975 0 26 18 2 0 0 0 0.79887 1 12105 12105 7.2892 1.0834 1 867310 + 31006 22852 20313 20721 36831 36831 0.011008733096218748 LDEKYLEKYF 10 Unmodified _LDEKYLEKYF_ 0 0 0 REV__ENSG00000196116|ENST00000355295|TDRD7 REV__ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.3460693359375 2 674.345186 1346.67582 NaN NaN NaN NaN NaN NaN NaN 83.218 1 82.72 82.22 83.22 -0.49751 0 0 0 0.98914 1 45555 45555 1.8442 0.36234 1 + 31007 23789 20314 20722 36832 36832 0.016348023006230505 LDELSHVYQI 10 Unmodified _LDELSHVYQI_ 0 0 0 REV__ENSG00000167654|ENST00000450849|ATCAY REV__ENSG00000167654|ENST00000450849|ATCAY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8193359375 2 608.814053 1215.61355 3.9589 0.0024103 3.2652 0.0019879 7.2241 0.0043982 608.8161041401265 99.376 0.13879 99.348 99.274 99.413 -0.028282 7 4 2 0 0 0 0.2178 1 55201 55201 32.305 8.2849 1 4879500 + 31008 22236 20315 20723 36833 36833 0.014370759522762455 LDEPAQPEF 9 Unmodified _LDEPAQPEF_ 0 0 0 REV__ENST00000464277.1_3_15:57999049-57999157:+|nuORF REV__ENST00000464277.1_3_15:57999049-57999157:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7660522460938 2 523.245472 1044.47639 -0.18059 -9.4494E-05 0.67951 0.00035555 0.49891 0.00026105 523.2452902675174 76.632 0.29156 76.153 76.097 76.388 -0.47945 22 14 2 0 0 0 0.17718 1 41999 41999 20.454 4.6854 1 2028600 + 31009 24539 20316 20724 36834 36834 -0.044068329272931805 LDESYVLNDL 10 Unmodified _LDESYVLNDL_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS AL20221201_MKP_PDAC_01 4 394.1979064941406 3 394.195921 1179.56593 NaN NaN NaN NaN NaN NaN NaN 54.032 1 48.167 47.667 48.667 -5.8653 0 0 0 0.80141 1 34218 34218 7.4771 0 1 + 31010 17243 20317 20725 36835 36835 -0.016666230385453673 LDETELYMCHK 11 Unmodified _LDETELYMCHK_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3096923828125 2 691.309963 1380.60537 -0.663 -0.00045834 -0.12837 -8.8741E-05 -0.79137 -0.00054708 691.3098720381297 33.85 0.41126 33.85 33.633 34.044 0 77 20 6 0 0 0 0.58219 2 17818 17713;17818 12.241 2.8575 1 86795000 31011 5236 20318 20726 36836;36837 36837 -0.06970562350988985 LDETELYMCHK 11 Unmodified _LDETELYMCHK_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3094482421875 2 691.309963 1380.60537 -0.66689 -0.00046102 -0.2406 -0.00016633 -0.90749 -0.00062735 691.309736371209 34.748 0.32159 34.748 34.56 34.882 0 61 16 5 0 0 0 0.58219 1 18374 18374 12.241 2.8575 1 41118000 31012 5236 20318 20726 36838 36838 -0.06970562350988985 LDETELYMCHK 11 Unmodified _LDETELYMCHK_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.8125 2 691.309963 1380.60537 -0.3205 -0.00022156 1.1542 0.00079794 0.83375 0.00057638 691.3107204983179 34.033 0.45724 33.842 33.617 34.074 -0.19131 49 17 4 0 0 0 0.58219 2 17714 17714;17813 12.241 5.1389 1 12182000 31013 5236 20318 20726 36839;36840 36839 -0.06970562350988985 LDEVFDDQWV 10 Unmodified _LDEVFDDQWV_ 0 0 0 REV__ENSG00000221909|ENST00000449309|FAM200A REV__ENSG00000221909|ENST00000449309|FAM200A MSMS AL20221201_MKP_PDAC_01 4 422.5257873535156 3 422.527671 1264.56118 NaN NaN NaN NaN NaN NaN NaN 14.631 1 12.128 11.628 12.628 -2.5029 0 0 0 0.97855 1 7445 7445 1.4551 0.44154 1 + 31014 24364 20319 20727 36841 36841 -0.060515071813370014 LDEYSLLDPQ 10 Unmodified _LDEYSLLDPQ_ 0 0 0 REV__nc|ENSG00000155229|Q96T76-9|MMS19 REV__nc|ENSG00000155229|Q96T76-9|MMS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.791259765625 2 596.790244 1191.56593 3.4903 0.002083 -1.2701 -0.00075797 2.2202 0.001325 596.7893041266965 98.315 0.43203 98.287 97.945 98.377 -0.028282 30 15 2 0 0 0 0.66569 1 54507 54507 6.7232 0 1 2026000 + 31015 21262 20320 20728 36842 36842 -0.02218623038561418 LDFDIFYNVTG 11 Unmodified _LDFDIFYNVTG_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.313720703125 2 652.313886 1302.61322 NaN NaN NaN NaN NaN NaN NaN 59.91 1 59.91 59.41 60.41 0 0 0 0 0.52067 1 33400 33400 23.79 5.4167 1 31016 791 20321 20729 36843 36843 -0.025983437675677123 LDFFLKNTE 9 Unmodified _LDFFLKNTE_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.197021484375 3 376.197485 1125.57063 NaN NaN NaN NaN NaN NaN NaN 20.577 1 20.587 20.087 21.087 0.010553 0 0 0 0.86004 1 10498 10498 0.26902 0 1 31017 2375 20322 20730 36844 36844 0.012863058948369144 LDFFPHKL 8 Unmodified _LDFFPHKL_ 0 0 0 REV__ENSG00000013441|ENST00000321356|CLK1 REV__ENSG00000013441|ENST00000321356|CLK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7809753417969 2 508.781828 1015.5491 1.0412 0.00052973 -1.2582 -0.00064014 -0.217 -0.00011041 508.78118169593006 20.948 0.488 18.255 18.019 18.507 -2.693 42 28 2 0 0 0 0.58902 1 11114 11114 26.884 2.2098 1 2065900 + 31018 17075 20323 20731 36845 36845 0.04194965656813565 LDFHRFYF 8 Unmodified _LDFHRFYF_ 0 0 0 ENST00000351010.6_1_5:149602275-149624861:-|nuORF;nc|ENSG00000070808|Q9UQM7|CAMK2A;ENSG00000070808|ENST00000671881|CAMK2A ENST00000351010.6_1_5:149602275-149624861:-|nuORF ENST00000351010.6_1_5:149602275-149624861:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7804565429688 2 572.782359 1143.55016 0.60476 0.00034639 -1.3688 -0.00078402 -0.76404 -0.00043763 572.7816515887823 90.024 0.28158 89.523 89.305 89.586 -0.50171 24 14 2 0 0 0 0.80624 1 49152 49152 2.8892 0 1 612740 31019 1040 20324 20732 36846 36846 -0.015868199742953948 LDFLQSFG 8 Unmodified _LDFLQSFG_ 0 0 0 REV__ENST00000434391.6_1_1:26796443-26796557:+|nuORF REV__ENST00000434391.6_1_1:26796443-26796557:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.7527465820312 2 463.734543 925.454533 1.1405 0.00052891 -1.0964 -0.00050844 0.044145 2.0472E-05 463.73397954079326 88.439 0.48126 82.263 82.013 82.494 -6.1757 57 26 3 0 0 0 8.7369 1 58183 58183 24.674 5.2349 1 22368000 + 31020 27010 20325 20733 36847 36847 -0.011175928851798744 LDFVLRHIN 9 Unmodified _LDFVLRHIN_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2168579101562 3 376.217102 1125.62948 NaN NaN NaN NaN NaN NaN NaN 20.26 1 20.288 19.788 20.788 0.028357 0 0 0 0.84021 1 10249 10249 2.7352 0 1 31021 2112 20326 20734 36848 36848 0.0716882697984147 LDFWGQGVL 9 Unmodified _LDFWGQGVL_ 0 0 0 REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7703857421875 2 517.768917 1033.52328 0.43137 0.00022335 0.97633 0.00050551 1.4077 0.00072887 517.7693429004996 84.435 0.20099 83.935 83.819 84.02 -0.49961 11 8 2 0 0 0 0.55775 1 46228 46228 3.9444 0 1 477170 + 31022 25057 20327 20735 36849 36849 0.007860714145181191 LDFWGQGVL 9 Unmodified _LDFWGQGVL_ 0 0 0 REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF REV__ENST00000264057.6_1_2:234378928-234379132:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 517.768917 1033.52328 0.43137 0.00022335 0.97633 0.00050551 1.4077 0.00072887 517.7693429004996 84.435 0.20099 83.935 83.819 84.02 -0.49961 0 0 NaN 3.9444 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 477170 + 31023 25057 20327 20735 0.007860714145181191 LDFYNDYF 8 Unmodified _LDFYNDYF_ 0 0 0 REV__ENST00000417846.2_1_6:116432031-116439170:+|nuORF REV__ENST00000417846.2_1_6:116432031-116439170:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1585083007812 3 366.158919 1095.45493 0.037952 1.3897E-05 0.13038 4.7739E-05 0.16833 6.1636E-05 366.15921561511453 35.874 0.16077 35.874 35.776 35.937 0 17 7 3 0 0 0 0.74163 1 18995 18995 10.074 1.9184 1 3094400 + 31024 23044 20328 20736 36850 36850 -0.0889821795599346 LDGDWGHCLC 10 Unmodified _LDGDWGHCLC_ 0 0 0 ENST00000368061.2_1_1:160397045-160397162:+|nuORF ENST00000368061.2_1_1:160397045-160397162:+|nuORF ENST00000368061.2_1_1:160397045-160397162:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.7708740234375 2 559.723326 1117.4321 0.85438 0.00047821 -1.7666 -0.00098879 -0.91218 -0.00051057 559.722334841761 80.502 0.38148 74.326 74.152 74.534 -6.1757 29 20 2 0 0 0 0.23227 1 52897 52897 6.7232 0 1 9865500 31025 12254 20329 20737 36851 36851 -0.12191883616742416 LDGHKMYEFVM 11 Unmodified _LDGHKMYEFVM_ 0 0 0 REV__nc|ENSG00000140538|Q16288-5|NTRK3;REV__nc|ENSG00000148053|Q16620-6|NTRK2 REV__nc|ENSG00000148053|Q16620-6|NTRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3157958984375 2 685.317591 1368.62063 0.25064 0.00017177 -1.3384 -0.00091723 -1.0878 -0.00074546 685.3164982975726 53.43 0.32125 53.43 53.263 53.584 0 41 14 4 0 0 0 0.71618 1 29702 29702 2.7352 0 1 17078000 + 31026 20923;20483 20330 20738 36852 36852 -0.04893650763165169 LDGHLKWNF 9 Unmodified _LDGHLKWNF_ 0 0 0 ENST00000337859.10_1_2:187373892-187374048:+|nuORF ENST00000337859.10_1_2:187373892-187374048:+|nuORF ENST00000337859.10_1_2:187373892-187374048:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2926635742188 2 565.293091 1128.57163 NaN NaN NaN NaN NaN NaN NaN 70.5 1 70.023 69.523 70.523 -0.47735 0 0 0 0.6032 1 38563 38563 12.532 3.9383 1 31027 11936 20331 20739 36853 36853 0.012485650544249438 LDGLEKYT 8 Unmodified _LDGLEKYT_ 0 0 0 nc|ENSG00000171587|O60469-2|DSCAM;ENSG00000171587|ENST00000400454|DSCAM nc|ENSG00000171587|O60469-2|DSCAM nc|ENSG00000171587|O60469-2|DSCAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 940.4869995117188 1 938.482939 937.475663 0.3515 0.00032988 -0.37284 -0.0003499 -0.021338 -2.0025E-05 938.4826122154777 67.931 0.49696 61.755 61.46 61.957 -6.1757 63 28 3 0 0 0 0.6895 1 44214 44214 18.135 0 1 56609000 31028 8117 20332 20740 36854 36854 0.004423724236630733 LDGLLEENI 9 Unmodified _LDGLLEENI_ 0 0 0 ENST00000462285.5_1_1:63920615-63988879:-|nuORF ENST00000462285.5_1_1:63920615-63988879:-|nuORF ENST00000462285.5_1_1:63920615-63988879:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2660522460938 2 508.268947 1014.52334 0.76934 0.00039103 -4.2832 -0.002177 -3.5139 -0.001786 508.26745875723844 42.891 0.35487 38.206 37.969 38.323 -4.6846 44 20 3 0 0 0 0.20428 1 25987 25987 22.736 2.3217 1 21175000 31029 13675 20333 20741 36855 36855 0.016660266238432087 LDGQDIKAFG 10 Unmodified _LDGQDIKAFG_ 0 0 0 REV__ENSG00000089022|ENST00000550735|MAPKAPK5 REV__ENSG00000089022|ENST00000550735|MAPKAPK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2749633789062 2 532.274564 1062.53457 -0.13264 -7.0601E-05 0.045397 2.4164E-05 -0.087242 -4.6437E-05 532.2745043520348 29.132 0.40567 29.132 28.943 29.349 0 34 19 2 0 0 0 0.62068 1 15045 15045 10.074 2.7847 1 4391500 + 31030 17824 20334 20742 36856 36856 0.0058084871798200766 LDGQQVILV 9 Unmodified _LDGQQVILV_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7907104492188 2 492.78985 983.565146 0.16125 7.9461E-05 0.82994 0.00040899 0.99119 0.00048845 492.7902236240962 76.666 0.26791 76.666 76.491 76.759 0 17 10 2 0 0 0 0.32871 1 42581 42581 15.847 0 1 423370 + 31031 22709 20335 20743 36857 36857 0.07270627103059724 LDGQRWHPF 9 Unmodified _LDGQRWHPF_ 0 0 0 REV__ENST00000515796.1_1_5:148577959-148579920:+|nuORF REV__ENST00000515796.1_1_5:148577959-148579920:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2885131835938 2 578.28834 1154.56213 NaN NaN NaN NaN NaN NaN NaN 65.22 1 64.736 64.236 65.236 -0.48428 0 0 0 0.7243 1 35590 35590 8.5933 0.68312 1 + 31032 28221 20336 20744 36858 36858 -0.008972032311248768 LDGSVNIL 8 Unmodified _LDGSVNIL_ 0 0 0 REV__nc|ENSG00000292357|P15509-8|CSF2RA REV__nc|ENSG00000292357|P15509-8|CSF2RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7337036132812 2 415.734543 829.454533 -0.62148 -0.00025837 -0.18325 -7.6182E-05 -0.80473 -0.00033455 415.7343658885943 28.764 0.32013 28.764 28.662 28.982 0 25 15 2 0 0 0 0.32798 1 14870 14870 52.268 6.2474 1 2736600 + 31033 24005 20337 20745 36859 36859 0.03298407114800739 LDHDMYEF 8 Unmodified _LDHDMYEF_ 0 0 0 REV__nc|ENSG00000065883|Q14004-2|CDK13;REV__ENSG00000167258|ENST00000447079|CDK12 REV__nc|ENSG00000065883|Q14004-2|CDK13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2974853515625 2 535.2184 1068.42225 0.62289 0.00033338 1.102 0.00058983 1.7249 0.00092321 535.2191348991046 49.803 0.19294 49.803 49.773 49.966 0 10 8 2 0 0 0 8.7369 1 27461 27461 9.3474 0 1 1387700 + 31034 17390;22197 20338 20746 36860 36860 -0.10922748350503753 LDHIVTYLF 9 Unmodified _LDHIVTYLF_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8060302734375 2 560.8055 1119.59645 0.58253 0.00032669 0.13028 7.3059E-05 0.71281 0.00039975 560.8055111322808 79.031 0.42699 78.545 78.349 78.776 -0.48596 60 18 4 0 0 0 0.085319 1 43240 43240 48.346 3.9388 1 17897000 31035 4191 20339 20747 36861 36861 0.04143200137127678 LDHLVLTSR 9 Unmodified _LDHLVLTSR_ 0 0 0 REV__nc|ENSG00000186716|P11274-2|BCR;REV__ENST00000576964.5_1_17:953371-986816:-|nuORF REV__nc|ENSG00000186716|P11274-2|BCR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7620239257812 2 527.306198 1052.59784 0.60487 0.00031895 -0.32601 -0.00017191 0.27887 0.00014705 527.3060187549806 47.314 0.13091 47.314 47.231 47.362 0 9 5 2 0 0 0 0.19891 1 25871 25871 11.64 0 1 600170 + 31036 23592;21502 20340 20748 36862 36862 0.07364834225882078 LDHMLTDPL 9 Unmodified _LDHMLTDPL_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7650146484375 2 527.765517 1053.51648 0.94428 0.00049836 -0.031614 -1.6685E-05 0.91267 0.00048167 527.7656168349339 55.671 0.51576 49.75 49.49 50.006 -5.9211 111 30 5 0 0 0 0.06187 1 35343 35343 42.095 2.1372 1 128200000 31037 7970 20341 20749 36863 36863 -0.008136095283589384 LDHPFELLQ 9 Unmodified _LDHPFELLQ_ 0 0 0 REV__nc|ENSG00000011332|Q92782-3|DPF1 REV__nc|ENSG00000011332|Q92782-3|DPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.29150390625 2 556.292756 1110.57096 0.45162 0.00025123 2.0555 0.0011435 2.5072 0.0013947 556.2936501749753 81.313 0.41284 81.313 81.102 81.515 0 39 18 3 0 0 0 0.49272 1 45069 45069 7.9102 0 1 1790500 + 31038 17055 20342 20750 36864 36864 0.02009725614720992 LDHPFELLQ 9 Unmodified _LDHPFELLQ_ 0 0 0 REV__nc|ENSG00000011332|Q92782-3|DPF1 REV__nc|ENSG00000011332|Q92782-3|DPF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.292756 1110.57096 0.45162 0.00025123 2.0555 0.0011435 2.5072 0.0013947 556.2936501749753 81.313 0.41284 81.313 81.102 81.515 0 0 0 NaN 7.9102 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1790500 + 31039 17055 20342 20750 0.02009725614720992 LDHTGVVVLC 10 Unmodified _LDHTGVVVLC_ 0 0 0 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 nc|ENSG00000160505|Q96MN2-3|NLRP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.5778198242188 2 528.281334 1054.54812 1.0506 0.00055501 0.64273 0.00033954 1.6933 0.00089455 528.28139408864 70.787 0.27816 70.823 70.658 70.936 0.035507 21 12 3 0 0 0 0.20053 1 38978 38978 21.747 0 1 1660400 31040 6732;16317 20343 20751 36865 36865 0.023023832256058085 LDIAHVTLL 9 Unmodified _LDIAHVTLL_ 0 0 0 REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7 REV__nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.80322265625 2 497.800217 993.585882 1.0202 0.00050784 0.77071 0.00038366 1.7909 0.0008915 497.80039272421453 81.008 0.49876 74.832 74.696 75.195 -6.1757 43 28 2 0 0 0 0.30562 1 53390 53390 16.942 0 1 16277000 + 31041 24512 20344 20752 36866 36866 0.08883217482730288 LDIEDVYQH 9 Unmodified _LDIEDVYQH_ 0 0 0 ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENST00000504022.1_1_5:74434805-74464953:-|nuORF ENSG00000145700|ENST00000506364|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.267333984375 2 566.269478 1130.5244 NaN NaN NaN NaN NaN NaN NaN 18.051 1 18.051 17.551 18.551 0 0 0 0 0.7818 1 8946 8946 6.7232 0.51738 1 31042 5713 20345 20753 36867 36867 -0.03563759007238332 LDIEMAFNY 9 Unmodified _LDIEMAFNY_ 0 0 0 nc|ENSG00000115866|P14868-2|DARS1;ENSG00000115866|ENST00000264161|DARS1 nc|ENSG00000115866|P14868-2|DARS1 nc|ENSG00000115866|P14868-2|DARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2579345703125 2 558.257525 1114.5005 0.50052 0.00027942 -0.18671 -0.00010423 0.31381 0.00017519 558.2573930981366 59.211 0.44737 58.72 58.474 58.921 -0.49079 42 20 3 0 0 0 0.48152 1 32251 32251 8.5933 0 1 1572600 31043 3171 20346 20754 36868 36868 -0.05217315765275998 LDINQEPII 9 Unmodified _LDINQEPII_ 0 0 0 ENST00000234668.6_1_1:85647735-85666124:-|nuORF;nc|ENSG00000097096|Q5VT97-2|SYDE2;ENSG00000097096|ENST00000341460|SYDE2 ENST00000234668.6_1_1:85647735-85666124:-|nuORF ENST00000234668.6_1_1:85647735-85666124:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7919921875 2 527.792589 1053.57063 0.54887 0.00028969 -1.0614 -0.00056021 -0.51254 -0.00027052 527.7919723314441 61.244 0.22759 61.244 61.069 61.297 0 14 9 2 0 0 0 0.41742 1 34163 34163 11.64 4.3511 1 954820 31044 1683 20347 20755 36869 36869 0.04598305894865007 LDISVGLR 8 Unmodified _LDISVGLR_ 0 0 0 ENSG00000176971|ENST00000318627|FIBIN ENSG00000176971|ENST00000318627|FIBIN ENSG00000176971|ENST00000318627|FIBIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.763916015625 2 436.763635 871.512717 0.91392 0.00039917 -0.30741 -0.00013426 0.60651 0.0002649 436.76346740023564 34.429 0.4907 30.333 30.074 30.565 -4.0951 85 28 4 0 0 0 0.46677 1 19769 19769 37.974 1.847 1 150190000 31045 8639 20348 20756 36870 36870 0.07182088760100669 LDITRLNSTL 10 Unmodified _LDITRLNSTL_ 0 0 0 REV__ENST00000569830.1_1_15:42840055-42840904:-|nuORF REV__ENST00000569830.1_1_15:42840055-42840904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5556640625 3 382.555672 1144.64519 0.09121 3.4893E-05 0.83101 0.00031791 0.92222 0.0003528 382.55597569238984 20.7 0.17536 20.71 20.601 20.776 0.010553 12 7 2 0 0 0 0.43662 1 10557 10557 19.626 0 1 2953500 + 31046 23180 20349 20757 36871 36871 0.07865068706246348 LDKEAECK 8 Unmodified _LDKEAECK_ 0 0 0 ENST00000515260.2_2_7:107269304-107269751:+|nuORF ENST00000515260.2_2_7:107269304-107269751:+|nuORF ENST00000515260.2_2_7:107269304-107269751:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2265319824219 2 468.228768 934.442982 -0.16102 -7.5395E-05 -2.8325 -0.0013262 -2.9935 -0.0014016 468.227489996157 33.757 0.21521 33.757 33.648 33.864 0 17 10 2 0 0 0 0.6895 1 17741 17741 18.135 0 1 1736600 31047 14665 20350 20758 36872 36872 -0.026861579708338468 LDKFPHLLL 9 Unmodified _LDKFPHLLL_ 0 0 0 REV__nc|ENSG00000113615|O95486-2|SEC24A REV__nc|ENSG00000113615|O95486-2|SEC24A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8902587890625 3 365.890215 1094.64882 0.20651 7.5561E-05 0.49154 0.00017985 0.69805 0.00025541 366.2249386212902 65.381 0.69832 64.897 64.616 65.314 -0.48428 38 31 2 0 0 0 0.54213 1 35640 35640 4.897 0 1 1889000 + 31048 18880 20351 20759 36873 36873 0.10527783270754298 LDKIDSDWEF 10 Unmodified _LDKIDSDWEF_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20221201_MKP_PDAC_01 4 423.1991882324219 3 423.199554 1266.57683 NaN NaN NaN NaN NaN NaN NaN 77.979 1 71.804 71.304 72.304 -6.1757 0 0 0 0.97592 1 51021 51021 1.5923 0.37745 1 + 31049 24045 20352 20760 36874 36874 -0.0457922066430001 LDKKSPGG 8 Unmodified _LDKKSPGG_ 0 0 0 REV__ENSG00000179562|ENST00000321407|GCC1 REV__ENSG00000179562|ENST00000321407|GCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2283630371094 2 401.226885 800.439217 NaN NaN NaN NaN NaN NaN NaN 17.769 1 17.769 17.269 18.269 0 0 0 0 0.97444 1 8783 8783 0.79363 0 1 + 31050 23103 20353 20761 36875 36875 0.031015403176297696 LDKKSPGG 8 Unmodified _LDKKSPGG_ 0 0 0 REV__ENSG00000179562|ENST00000321407|GCC1 REV__ENSG00000179562|ENST00000321407|GCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2276306152344 2 401.226885 800.439217 NaN NaN NaN NaN NaN NaN NaN 17.668 1 17.682 17.182 18.182 0.013865 0 0 0 0.97444 1 8804 8804 0.79363 0 1 + 31051 23103 20353 20761 36876 36876 0.031015403176297696 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7999877929688 2 479.800217 957.585882 -0.32827 -0.0001575 -0.20717 -9.9401E-05 -0.53544 -0.0002569 479.80007121275054 18.488 0.099463 18.488 18.444 18.543 0 19 12 2 0 0 0 0.33506 1 9203 9203 51.488 3.756 1 780240 31052 1671 20354 20762 36877 36877 0.10539217482710228 LDKKVEKV 8 Unmodified _LDKKVEKV_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.8002014160156 2 479.800217 957.585882 1.2361 0.00059307 0.80798 0.00038767 2.0441 0.00098074 479.8006341772642 20.426 0.29093 17.733 17.571 17.862 -2.693 35 15 3 0 0 0 0.099528 1 10822 10822 100.09 13.759 1 5861100 31053 1671 20354 20762 36878 36878 0.10539217482710228 LDKMKILL 8 Unmodified _LDKMKILL_ 0 0 0 REV__ENSG00000146950|ENST00000380913|SHROOM2 REV__ENSG00000146950|ENST00000380913|SHROOM2 MSMS AL20221201_MKP_PDAC_01 4 487.3117980957031 2 487.309364 972.604174 NaN NaN NaN NaN NaN NaN NaN 80.618 1 74.442 73.942 74.942 -6.1757 0 0 0 0.97132 1 52898 52898 6.2058 0.44535 1 + 31054 20856 20355 20763 36879 36879 0.11677636133083524 LDKNSELLSLI 11 Unmodified _LDKNSELLSLI_ 0 0 0 REV__ENST00000538682.5_1_11:62651934-62653989:+|nuORF REV__ENST00000538682.5_1_11:62651934-62653989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.8580322265625 2 622.85846 1243.70237 0.39819 0.00024802 -0.64033 -0.00039884 -0.24214 -0.00015082 622.8578191319837 68.98 0.24635 68.98 68.838 69.084 0 18 10 2 0 0 0 0.49694 1 38433 38433 16.566 1.3174 1 1029100 + 31055 28561 20356 20764 36880 36880 0.09026491191980313 LDKRYVYI 8 Unmodified _LDKRYVYI_ 0 0 0 REV__nc|ENSG00000136237|Q92565|RAPGEF5 REV__nc|ENSG00000136237|Q92565|RAPGEF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.281982421875 2 535.305667 1068.59678 -0.096097 -5.1441E-05 2.0079 0.0010749 1.9118 0.0010234 535.3065257459587 69.518 0.41328 69.039 68.721 69.134 -0.47903 26 17 2 0 0 0 8.7369 1 37838 37838 16.942 4.4107 1 911790 + 31056 20148 20357 20765 36881 36881 0.06522619856991696 LDLAEVDYF 9 Unmodified _LDLAEVDYF_ 0 0 0 REV__ENSG00000113905|ENST00000232003|HRG REV__ENSG00000113905|ENST00000232003|HRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2664184570312 2 542.763497 1083.51244 0.14405 7.8188E-05 -0.82309 -0.00044674 -0.67903 -0.00036855 542.7631560553946 62.294 1.6416 62.294 61.389 63.031 0 300 82 4 0 0 0 0.41742 1 34276 34276 11.64 3.047 1 102080000 + 31057 18895 20358 20766 36882 36882 -0.025973757504289097 LDLAFYEVF 9 Unmodified _LDLAFYEVF_ 0 0 0 REV__nc|ENSG00000073578|P31040-2|SDHA;REV__ENST00000440535.5_1_3:197342537-197350198:-|nuORF REV__nc|ENSG00000073578|P31040-2|SDHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7820434570312 2 558.784233 1115.55391 NaN NaN NaN NaN NaN NaN NaN 41.969 1 41.969 41.469 42.469 0 0 0 0 0.13852 1 22687 22687 38.151 6.8828 1 + 31058 17537;26745 20359 20767 36883 36883 0.0007580500889616815 LDLARRNQL 9 Unmodified _LDLARRNQL_ 0 0 0 REV__ENSG00000242950|ENST00000603053|ERVW-1 REV__ENSG00000242950|ENST00000603053|ERVW-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.884765625 3 366.884123 1097.63054 0.85114 0.00031227 -0.24714 -9.0671E-05 0.604 0.0002216 366.8841110736337 16.709 0.14629 14.152 14.075 14.221 -2.557 36 22 2 0 0 0 0.32235 1 8658 8658 16.149 0 1 2482900 + 31059 24469 20360 20768 36884 36884 0.08563041348747902 LDLDGVSRQQ 10 Unmodified _LDLDGVSRQQ_ 0 0 0 ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.2715454101562 2 565.793652 1129.57275 0.90528 0.0005122 -2.2024 -0.0012461 -1.2971 -0.00073391 565.7930302401367 47.976 0.2602 42.742 42.628 42.888 -5.2339 36 15 3 0 0 0 0.22489 1 29822 29822 18.146 1.2041 1 13770000 31060 8449 20361 20769 36885 36885 0.013147346326832121 LDLDSPVE 8 Unmodified _LDLDSPVE_ 0 0 0 REV__ENST00000526903.1_1_11:71671906-71693970:+|nuORF REV__ENST00000526903.1_1_11:71671906-71693970:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 444.2226867675781 2 444.221465 886.428378 NaN NaN NaN NaN NaN NaN NaN 74.8 1 68.624 68.124 69.124 -6.1757 0 0 0 0.90769 1 48905 48905 18.135 0 1 + 31061 25935 20362 20770 36886 36886 -0.019379068473199368 LDLEGELI 8 Unmodified _LDLEGELI_ 0 0 0 REV__ENSG00000168658|ENST00000477737|VWA3B REV__ENSG00000168658|ENST00000477737|VWA3B MSMS AL20221201_MKP_PDAC_01 4 451.2488098144531 2 451.247483 900.480414 NaN NaN NaN NaN NaN NaN NaN 85.017 1 78.841 78.341 79.341 -6.1757 0 0 0 0.4637 1 55967 55967 44.407 0 1 + 31062 22330 20363 20771 36887 36887 0.026192565664246104 LDLFQSSVNV 10 Unmodified _LDLFQSSVNV_ 0 0 0 nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2;nc|ENSG00000112499|O15244-3|SLC22A2 nc|ENSG00000112499|O15244-2|SLC22A2 nc|ENSG00000112499|O15244-2|SLC22A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7923583984375 2 561.295496 1120.57644 0.28317 0.00015894 -1.7764 -0.00099706 -1.4932 -0.00083812 561.7955503000119 64.796 0.45863 64.796 64.496 64.955 0 102 22 6 0 0 0 0.48505 1 36230 36230 17.113 1.8644 1 77707000 31063 2895 20364 20772 36888 36888 0.02097404406526948 LDLGFHLSR 9 Unmodified _LDLGFHLSR_ 0 0 0 nc|ENSG00000131269|O75027-3|ABCB7;ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 nc|ENSG00000131269|O75027-3|ABCB7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7557373046875 2 529.293091 1056.57163 -0.32653 -0.00017283 2.4239 0.0012829 2.0974 0.0011101 529.2941301124032 33.344 0.15256 33.184 33.118 33.27 -0.15919 8 5 2 0 0 0 0.19205 1 17362 17362 14.838 0 1 461150 31064 4315 20365 20773 36889 36889 0.04560565054430299 LDLGLRTH 8 Unmodified _LDLGLRTH_ 0 0 0 ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7664184570312 2 462.766709 923.518865 NaN NaN NaN NaN NaN NaN NaN 34.668 1 34.476 33.976 34.976 -0.19131 0 0 0 0.76593 1 18123 18123 24.991 0.31707 1 31065 15520 20366 20774 36890 36890 0.054046069916125816 LDLGLRTH 8 Unmodified _LDLGLRTH_ 0 0 0 ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF ENST00000576156.1_1_17:79871830-79872373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7662048339844 2 462.766709 923.518865 0.19837 9.18E-05 -0.10544 -4.8795E-05 0.092929 4.3005E-05 462.7666226535155 34.47 0.2809 34.497 34.347 34.628 0.027401 29 12 4 0 0 0 0.71187 1 18139 18139 16.149 0.30192 1 6789700 31066 15520 20366 20774 36891 36891 0.054046069916125816 LDLGPPVSG 9 Unmodified _LDLGPPVSG_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1 nc|ENSG00000100280|Q10567-4|AP1B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7348327636719 2 427.734543 853.454533 NaN NaN NaN NaN NaN NaN NaN 57.142 1 57.142 56.642 57.642 0 0 0 0 0.46757 1 31794 31794 16.942 0 1 31067 1783 20367 20775 36892 36892 0.02194407114814112 LDLMSDALVL 10 Unmodified _LDLMSDALVL_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2020568847656 3 363.866859 1088.57875 1.2417 0.00045182 -0.19855 -7.2245E-05 1.0432 0.00037958 364.2008818003111 78.208 0.24268 72.032 71.831 72.073 -6.1757 17 13 2 0 0 0 0.44373 1 51180 51180 16.566 0 1 15986000 31068 4821 20368 20776 36893 36893 0.03800116819957111 LDLNFKTVY 9 Unmodified _LDLNFKTVY_ 0 0 0 REV__ENSG00000204920|ENST00000270014|ZNF155 REV__ENSG00000204920|ENST00000270014|ZNF155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3009643554688 2 556.802957 1111.59136 0.50373 0.00028048 0.30532 0.00017 0.80905 0.00045048 556.8031961618278 59.118 0.42303 58.627 58.369 58.792 -0.49079 66 19 5 0 0 0 0.53557 1 32076 32076 8.5933 3.3626 1 34326000 + 31069 24206 20369 20777 36894 36894 0.040028962745282115 LDLNISTY 8 Unmodified _LDLNISTY_ 0 0 0 ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7449951171875 2 469.745108 937.475663 0.10482 4.9241E-05 0.12731 5.9804E-05 0.23214 0.00010905 469.74475406012755 60.165 0.13554 59.675 59.63 59.766 -0.49079 8 6 2 0 0 0 0.72953 1 32778 32778 14.582 0 1 2025500 31070 8417 20370 20778 36895 36895 0.00442372423674442 LDLNNNQIQ 9 Unmodified _LDLNNNQIQ_ 0 0 0 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 ENSG00000174123|ENST00000308973|TLR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2742919921875 2 536.275095 1070.53564 0.86197 0.00046225 -1.0419 -0.00055876 -0.17995 -9.6504E-05 536.2752530860867 48.4 0.50776 43.166 42.774 43.282 -5.2339 46 30 3 0 0 0 0.25681 1 30207 30207 19.257 0 1 20279000 31071 8391 20371 20779 36896 36896 0.0031906308690849983 LDLNNRVTRL 10 Unmodified _LDLNNRVTRL_ 0 0 0 REV__ENSG00000170160|ENST00000399273|CCDC144A REV__ENSG00000170160|ENST00000399273|CCDC144A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2385864257812 3 405.238566 1212.69387 -0.58412 -0.00023671 0.87279 0.00035369 0.28866 0.00011698 405.2389055685082 18.341 0.13105 18.341 18.26 18.391 0 53 20 3 0 0 0 0.52097 1 9095 9095 9.7643 1.3199 1 4115100 + 31072 22450 20372 20780 36897 36897 0.09602982065985088 LDLNNRVTRL 10 Unmodified _LDLNNRVTRL_ 0 0 0 REV__ENSG00000170160|ENST00000399273|CCDC144A REV__ENSG00000170160|ENST00000399273|CCDC144A MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2386169433594 3 405.238566 1212.69387 1.2473 0.00050546 -0.73109 -0.00029627 0.51623 0.00020919 405.2382024262252 20.175 0.56289 17.519 17.275 17.838 -2.6564 141 35 5 0 0 0 0.52097 1 10757 10757 9.7643 1.4778 1 419900000 + 31073 22450 20372 20780 36898 36898 0.09602982065985088 LDLNSGAALL 10 Unmodified _LDLNSGAALL_ 0 0 0 chr20:45792431-45792677|54|13.33|0.31|5.44|+|2|TE_info:MIR,MIR_dup165914,MIR,SINE,donor,+,45792231,45792431|None,DNTTIP1|1 chr20:45792431-45792677|54|13.33|0.31|5.44|+|2|TE_info:MIR,MIR_dup165914,MIR,SINE,donor,+,45792231,45792431|None,DNTTIP1|1 chr20:45792431-45792677|54|13.33|0.31|5.44|+|2|TE_info:MIR,MIR_dup165914,MIR,SINE,donor,+,45792231,45792431|None,DNTTIP1|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7816772460938 2 493.779482 985.544411 0.68746 0.00033945 0.93574 0.00046205 1.6232 0.0008015 493.78063191602865 85.516 0.61205 85.014 84.732 85.344 -0.5015 94 48 2 0 0 0 0.38092 1 46672 46672 22.736 2.2827 1 16028000 31074 110 20373 20781 36899 36899 0.05106036723384477 LDLRETIDFL 10 Unmodified _LDLRETIDFL_ 0 0 0 nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF;nc|ENSG00000134369|Q8NEY1-6|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2267761230469 3 412.227444 1233.6605 -1.2276 -0.00050605 -0.038221 -1.5756E-05 -1.2658 -0.00052181 412.22740742896065 32.616 0.32976 32.616 32.481 32.811 0 30 17 2 0 0 0 0.70734 1 17023 17023 2.086 0 1 4624900 31075 4601 20374 20782 36900 36900 0.05301935503416644 LDLRKEGEFYP 11 Unmodified _LDLRKEGEFYP_ 0 0 0 nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.572265625 3 456.238232 1365.69287 0.92954 0.00042409 -0.30798 -0.00014051 0.62156 0.00028358 456.23821959659625 53.417 0.27412 47.613 47.498 47.772 -5.8042 27 17 3 0 0 0 0.30515 1 33735 33735 3.8459 1.0026 1 23856000 31076 8111 20375 20783 36901 36901 0.0246472290643851 LDLRLQRGH 9 Unmodified _LDLRLQRGH_ 0 0 0 REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.2210083007812 3 369.884235 1106.63087 0.75652 0.00027983 1.0792 0.00039916 1.8357 0.00067899 369.8844749908528 16.321 0.16892 13.764 13.666 13.835 -2.557 35 20 2 0 0 0 0.21767 1 8390 8390 1.1933 0 1 2972800 + 31077 17940 20376 20784 36902 36902 0.08182461068599878 LDLRQLETL 9 Unmodified _LDLRQLETL_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8185424804688 2 550.819138 1099.62372 0.41443 0.00022828 -0.072863 -4.0134E-05 0.34157 0.00018814 550.8191631142122 55.288 0.23515 54.81 54.691 54.927 -0.47798 18 10 2 0 0 0 0.47359 1 30018 30018 13.042 0 1 1289100 31078 4968 20377 20785 36903 36903 0.07789683677515313 LDLRQVLF 8 Unmodified _LDLRQVLF_ 0 0 0 REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF REV__ENST00000412278.2_3_11:66413628-66413886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3011169433594 2 502.300384 1002.58622 0.18252 9.1678E-05 0.51781 0.0002601 0.70033 0.00035177 502.3005929233568 51.053 0.22493 50.999 50.882 51.107 -0.053871 28 10 3 0 0 0 0.63229 1 27615 27615 23.148 1.4018 1 3413800 + 31079 26721 20378 20786 36904 36904 0.08502637202570895 LDLRTWHM 8 Unmodified _LDLRTWHM_ 0 0 0 REV__ENSG00000196663|ENST00000359520|TECPR2 REV__ENSG00000196663|ENST00000359520|TECPR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.27294921875 2 536.273844 1070.53313 0.86197 0.00046225 1.2912 0.00069245 2.1532 0.0011547 536.2752530860867 48.4 0.50776 43.166 42.774 43.282 -5.2339 46 30 3 0 0 0 0.72664 1 30075 30075 14.838 0.43289 1 20279000 + 31080 23858 20379 20787 36905 36905 0.0006893614825003169 LDLSSGLVV 9 Unmodified _LDLSSGLVV_ 0 0 0 nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.5267944335938 1 902.519325 901.512048 0.055334 4.994E-05 0.35413 0.00031961 0.40946 0.00036955 902.519916214156 89.157 0.27355 89.157 89.032 89.306 0 22 12 2 0 0 0 0.49272 1 49290 49290 7.9102 0 1 1024300 31081 2084 20380 20788 36906 36906 0.057352493203779886 LDLYSIITL 9 Unmodified _LDLYSIITL_ 0 0 0 REV__nc|ENSG00000153832|Q8NEA4-3|FBXO36 REV__nc|ENSG00000153832|Q8NEA4-3|FBXO36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8077392578125 2 525.807708 1049.60086 0.96253 0.0005061 -1.0676 -0.00056137 -0.10511 -5.5268E-05 525.8074437811455 101.39 0.14715 95.215 95.144 95.291 -6.1757 16 7 3 0 0 0 0.042911 1 68048 68048 48.346 6.2513 1 24073000 + 31082 21190 20381 20789 36907 36907 0.07804664560057972 LDMEINAYR 9 Unmodified _LDMEINAYR_ 0 0 0 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.18359375 3 375.518341 1123.53319 1.4056 0.00052784 -1.897 -0.00071236 -0.49137 -0.00018452 375.51778583965535 77.774 0.33244 71.598 71.498 71.83 -6.1757 25 18 2 0 0 0 0.20399 1 51014 51014 10.8 3.5103 1 9957600 31083 8608 20382 20790 36908 36908 -0.023631086424074965 LDMGHADSSRF 11 Unmodified _LDMGHADSSRF_ 0 0 0 REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF REV__ENST00000535182.1_1_12:132325313-132329132:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.275634765625 2 618.277312 1234.54007 NaN NaN NaN NaN NaN NaN NaN 59.787 1 59.297 58.797 59.797 -0.49079 0 0 0 0.85601 1 32536 32536 9.3831 2.0939 1 + 31084 24030 20383 20791 36909 36909 -0.06781795761844478 LDMRPLPGAP 10 Unmodified _LDMRPLPGAP_ 0 0 0 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1067.068603515625 1 1066.57138 1065.5641 0.21382 0.00022805 -0.2736 -0.00029182 -0.059784 -6.3764E-05 1066.5721971460025 48.975 0.20897 48.603 48.464 48.673 -0.37172 11 10 2 0 0 0 0.23981 1 26260 26260 1.8442 0 1 1676500 + 31085 21499 20384 20792 36910 36910 0.03394089462494776 LDMSETRSSDP 11 Unmodified _LDMSETRSSDP_ 0 0 0 ENSG00000178234|ENST00000430044|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.77490234375 2 619.271892 1236.52923 0.52222 0.00032339 1.1082 0.00068629 1.6304 0.0010097 619.2724589558374 87.897 0.42517 87.393 87.177 87.602 -0.50423 66 19 4 0 0 0 0.63534 1 48011 48011 9.544 0.16085 1 8395500 31086 8738 20385 20793 36911 36911 -0.07957242926772778 LDMSHNSATNT 11 Unmodified _LDMSHNSATNT_ 0 0 0 REV__ENSG00000180530|ENST00000318948|NRIP1 REV__ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5084533691406 3 397.508393 1189.50335 -1.3372 -0.00053154 0.8818 0.00035052 -0.45536 -0.00018101 397.50877873623284 32.403 0.21094 32.403 32.261 32.472 0 27 12 3 0 0 0 0.68282 1 16910 16910 5.8681 5.8681 1 15838000 + 31087 23155 20386 20794 36912 36912 -0.08382092378406014 LDMSHNSATNT 11 Unmodified _LDMSHNSATNT_ 0 0 0 REV__ENSG00000180530|ENST00000318948|NRIP1 REV__ENSG00000180530|ENST00000318948|NRIP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 397.508393 1189.50335 -1.3372 -0.00053154 0.8818 0.00035052 -0.45536 -0.00018101 397.50877873623284 32.403 0.21094 32.403 32.261 32.472 0 0.02928 5.4009E-05 NaN 5.8681 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 15838000 + 31088 23155 20386 20794 -0.08382092378406014 LDMSHNSATNT 11 Unmodified _LDMSHNSATNT_ 0 0 0 REV__ENSG00000180530|ENST00000318948|NRIP1 REV__ENSG00000180530|ENST00000318948|NRIP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 397.508393 1189.50335 -0.12637 -5.0234E-05 0.68689 0.00027304 0.56052 0.00022281 397.5084798107932 32.473 0.2169 32.344 32.176 32.392 -0.12915 -0.02928 -0.00017843 NaN 5.8681 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2207500 + 31089 23155 20386 20794 -0.08382092378406014 LDNGYILYV 9 Unmodified _LDNGYILYV_ 0 0 0 REV__ENSG00000112293|ENST00000230036|GPLD1 REV__ENSG00000112293|ENST00000230036|GPLD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1069.409057617188 1 1069.55644 1068.54916 0.39303 0.00042037 1.9548 0.0020908 2.3478 0.0025112 1069.5589001953686 83.237 0.21807 82.74 82.672 82.89 -0.49751 11 8 2 0 0 0 0.16524 1 45579 45579 26.268 0 1 724740 + 31090 18804 20387 20795 36913 36913 0.017629208661446683 LDNLLHELIK 10 Unmodified _LDNLLHELIK_ 0 0 0 REV__nc|ENSG00000136237|Q92565|RAPGEF5 REV__nc|ENSG00000136237|Q92565|RAPGEF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3545532226562 2 604.355888 1206.69722 NaN NaN NaN NaN NaN NaN NaN 72.929 1 72.929 72.429 73.429 0 0 0 0 0.99388 1 40605 40605 1.3295 0.72803 1 + 31091 20148 20388 20796 36914 36914 0.10214232119983535 LDNLYKYY 8 Unmodified _LDNLYKYY_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.733154296875 2 546.274032 1090.53351 0.68977 0.0003768 -2.4105 -0.0013168 -1.7208 -0.00094001 546.2728823690982 91.143 0.45252 84.968 84.755 85.207 -6.1757 43 25 2 0 0 0 8.7369 1 60315 60315 16.942 0.79319 1 14456000 + 31092 18621 20389 20797 36915 36915 -0.008133656509016873 LDNMPNDE 8 Unmodified _LDNMPNDE_ 0 0 0 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 ENSG00000165355|ENST00000298097|FBXO33 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8582763671875 2 474.192382 946.370211 -0.4765 -0.00022595 0.62333 0.00029558 0.14682 6.9623E-05 474.1929175671748 34.125 0.36333 34.125 33.926 34.289 0 45 18 3 0 0 0 8.7369 1 17842 17842 4.756 2.1785 1 17976000 31093 7330 20390 20798 36916 36916 -0.10511911764263004 LDNTDRSWL 9 Unmodified _LDNTDRSWL_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.27587890625 2 560.275095 1118.53564 1.3515 0.00075723 0.75776 0.00042456 2.1093 0.0011818 560.2756972893975 63.808 0.65721 57.632 57.242 57.899 -6.1757 59 36 2 0 0 0 0.2143 1 41236 41236 21.747 3.6003 1 26732000 31094 3407 20391 20799 36917 36917 -0.01888936913087491 LDPAQLEAVI 10 Unmodified _LDPAQLEAVI_ 0 0 0 REV__ENSG00000133597|ENST00000072869|ADCK2 REV__ENSG00000133597|ENST00000072869|ADCK2 MSMS AL20221201_MKP_PDAC_01 4 534.800537109375 2 534.800414 1067.58628 NaN NaN NaN NaN NaN NaN NaN 72.588 1 66.412 65.912 66.912 -6.1757 0 0 0 0.49971 1 47488 47488 26.268 1.2772 1 + 31095 19926 20392 20800 36918 36918 0.05518592411908685 LDPDVFFYEND 11 Unmodified _LDPDVFFYEND_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.7985229492188 2 687.298433 1372.58231 -0.078032 -5.3631E-05 -0.91288 -0.00062742 -0.99091 -0.00068105 687.7992930855199 64.693 0.17845 64.693 64.587 64.765 0 13 8 2 0 0 0 0.68427 1 36085 36085 5.7319 1.7875 1 688790 + 31096 21792 20393 20801 36919 36919 -0.08907541872463298 LDPEGDQEY 9 Unmodified _LDPEGDQEY_ 0 0 0 REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF REV__ENST00000456813.1_1_1:39325817-39341821:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2218017578125 2 533.222194 1064.42983 -1.0634 -0.00056703 -0.10174 -5.425E-05 -1.1651 -0.00062128 533.2222830538547 32.445 0.39557 32.445 32.223 32.618 0 63 23 3 0 0 0 0.42049 2 16894 16894;16997 11.495 4.7715 1 37114000 + 31097 27258 20394 20802 36920;36921 36920 -0.0998031754920703 LDPHAFFDAY 10 Unmodified _LDPHAFFDAY_ 0 0 0 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.276123046875 2 598.274564 1194.53457 0.64271 0.00038451 3.0036 0.001797 3.6463 0.0021815 598.2760454394544 72.299 0.30305 71.822 71.615 71.918 -0.4761 30 13 3 0 0 0 0.54684 1 39571 39571 13.906 5.1606 1 1800100 + 31098 19126 20395 20803 36922 36922 -0.054911512819899144 LDPKENKQQHI 11 Unmodified _LDPKENKQQHI_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000608676.1_1_19:36545867-36550933:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.5774841308594 3 450.577247 1348.70991 0.79705 0.00035913 -0.54494 -0.00024554 0.25212 0.0001136 450.5772216107715 22.349 0.31805 19.614 19.431 19.749 -2.7348 22 16 2 0 0 0 0.71618 1 11980 11980 1.1098 0 1 3838500 31099 1167 20396 20804 36923 36923 0.0495064351223391 LDPLPAIRTL 10 Unmodified _LDPLPAIRTL_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2296142578125 3 370.229008 1107.66519 1.5186 0.00056225 -1.0368 -0.00038384 0.48187 0.0001784 370.22866633010256 19.248 0.21254 16.591 16.436 16.649 -2.6564 20 14 2 0 0 0 0.67046 1 10172 10172 6.1918 4.1058 1 3479200 31100 1854 20397 20805 36924 36924 0.11566864436849755 LDPNYQSIK 9 Unmodified _LDPNYQSIK_ 0 0 0 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2835693359375 2 539.282389 1076.55022 NaN NaN NaN NaN NaN NaN NaN 78.155 1 78.155 77.655 78.655 0 0 0 0 0.84892 1 43439 43439 1.6526 0.17072 1 31101 3825 20398 20806 36925 36925 0.015011352350256857 LDPQPGLMTL 10 Unmodified _LDPQPGLMTL_ 0 0 0 REV__ENST00000514984.1_1_4:1243983-1244804:+|nuORF REV__ENST00000514984.1_1_4:1243983-1244804:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7867431640625 2 542.788992 1083.56343 NaN NaN NaN NaN NaN NaN NaN 62.016 1 61.528 61.028 62.028 -0.48764 0 0 0 0.59691 1 33781 33781 21.537 3.3906 1 + 31102 28201 20399 20807 36926 36926 0.024992500228108838 LDPSDCPG 8 Unmodified _LDPSDCPG_ 0 0 0 REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF REV__ENST00000356971.3_1_6:52925737-52926583:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1676330566406 2 402.165636 802.316719 NaN NaN NaN NaN NaN NaN NaN 79.36 1 79.36 78.86 79.86 0 0 0 0 0.97444 1 44084 44084 2.5775 0 1 + 31103 25834 20400 20808 36927 36927 -0.0923466447611645 LDPSLDTLP 9 Unmodified _LDPSLDTLP_ 0 0 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7582702636719 2 485.758215 969.501877 0.34958 0.00016981 -0.14834 -7.2058E-05 0.20124 9.7756E-05 485.7582270707536 69.206 0.44448 69.206 68.978 69.423 0 46 19 3 0 0 0 0.30562 1 38583 38583 16.942 0 1 2816900 31104 3974 20401 20809 36928 36928 0.015906415951349118 LDPVLEHPF 9 Unmodified _LDPVLEHPF_ 0 0 0 REV__ENSG00000186104|ENST00000334636|CYP2R1 REV__ENSG00000186104|ENST00000334636|CYP2R1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.2582397460938 2 533.782025 1065.5495 0.53959 0.00028803 -0.037904 -2.0232E-05 0.50169 0.00026779 533.7823318284271 48.091 0.32604 42.857 42.692 43.018 -5.2339 23 19 2 0 0 0 0.15672 1 29829 29829 20.454 3.3407 1 7013200 + 31105 23550 20402 20810 36929 36929 0.01934340586012695 LDPYYYFQQGW 11 Unmodified _LDPYYYFQQGW_ 0 0 0 nc|ENSG00000183873|Q14524-5|SCN5A;nc|ENSG00000183873|Q14524-3|SCN5A;nc|ENSG00000183873|Q14524-6|SCN5A;ENSG00000183873|ENST00000423572|SCN5A;nc|ENSG00000183873|Q14524|SCN5A;nc|ENSG00000183873|Q14524-4|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A nc|ENSG00000183873|Q14524-5|SCN5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 740.8345336914062 2 740.33261 1478.65067 0.40778 0.00030189 -0.59647 -0.00044159 -0.18869 -0.00013969 740.33179918081 100.63 0.11412 94.45 94.374 94.488 -6.1757 12 7 2 0 0 0 0.66968 1 67339 67339 7.1017 0 1 24993000 31106 9207 20403 20811 36930 36930 -0.06951252501971794 LDQCCDSTLGC 11 Unmodified _LDQCCDSTLGC_ 0 0 0 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1510009765625 3 386.48057 1156.41988 0.47483 0.00018351 2.0637 0.00079759 2.5386 0.0009811 386.4815618310529 68.474 0.26931 67.994 67.784 68.053 -0.48071 20 11 3 0 0 0 0.30452 1 37385 37385 0.45452 0 1 931060 + 31107 17895 20404 20812 36931 36931 -0.1520728814211907 LDQCCDSTLGC 11 Unmodified _LDQCCDSTLGC_ 0 0 0 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 386.48057 1156.41988 0.19769 7.6404E-05 2.6416 0.0010209 2.8393 0.0010973 386.48155586532675 67.922 0.14922 67.922 67.875 68.024 0 -0.035772 0.00039814 NaN 0.45452 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 456520 + 31108 17895 20404 20812 -0.1520728814211907 LDQDILIDY 9 Unmodified _LDQDILIDY_ 0 0 0 REV__ENSG00000131044|ENST00000535842|TTLL9 REV__ENSG00000131044|ENST00000535842|TTLL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2820434570312 2 554.282054 1106.54956 0.43797 0.00024276 -0.37097 -0.00020562 0.067002 3.7138E-05 554.2818874343039 69.756 0.33577 69.756 69.598 69.934 0 44 15 4 0 0 0 0.07916 1 38894 38894 37.974 7.3375 1 5678500 + 31109 19766 20405 20813 36932 36932 0.0005429579534848017 LDQDILIDY 9 Unmodified _LDQDILIDY_ 0 0 0 REV__ENSG00000131044|ENST00000535842|TTLL9 REV__ENSG00000131044|ENST00000535842|TTLL9 MSMS AL20221201_MKP_PDAC_01 4 554.283203125 2 554.282054 1106.54956 NaN NaN NaN NaN NaN NaN NaN 78.133 1 71.957 71.457 72.457 -6.1757 0 0 0 0.20153 1 51131 51131 30.637 2.1497 1 + 31110 19766 20405 20813 36933 36933 0.0005429579534848017 LDQDILIDY 9 Unmodified _LDQDILIDY_ 0 0 0 REV__ENSG00000131044|ENST00000535842|TTLL9 REV__ENSG00000131044|ENST00000535842|TTLL9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 554.282054 1106.54956 0.43797 0.00024276 -0.37097 -0.00020562 0.067002 3.7138E-05 554.2818874343039 69.756 0.33577 69.756 69.598 69.934 0 0 0 NaN 37.974 44 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5678500 + 31111 19766 20405 20813 0.0005429579534848017 LDQFDRFQQRE 11 Unmodified _LDQFDRFQQRE_ 0 0 0 REV__RCN3|p.R253Q|1|0.09|ENSG00000142552|chr19:49542631-49542631|G/A|missense_variant REV__RCN3|p.R253Q|1|0.09|ENSG00000142552|chr19:49542631-49542631|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.5755615234375 3 494.575907 1480.70589 -0.39631 -0.00019601 -0.056129 -2.776E-05 -0.45244 -0.00022377 494.5762326763647 18.604 0.1157 18.627 18.574 18.69 0.023106 31 15 3 0 0 0 0.74046 1 9325 9325 0.45452 0 1 406070 + 31112 30086 20406 20814 36934 36934 -0.01523445981479199 LDQGPNHVDCI 11 Unmodified _LDQGPNHVDCI_ 0 0 0 REV__ENSG00000125484|ENST00000372146|GTF3C4 REV__ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7800903320312 2 605.779687 1209.54482 0.18968 0.00011491 -0.61577 -0.00037302 -0.42609 -0.00025811 605.7790581404893 65.376 0.44598 64.892 64.575 65.021 -0.48428 49 20 4 0 0 0 0.35681 1 35656 35656 23.79 5.6434 1 8892800 + 31113 19495 20407 20815 36935 36935 -0.051569116190648856 LDQGPNHVDCI 11 Unmodified _LDQGPNHVDCI_ 0 0 0 REV__ENSG00000125484|ENST00000372146|GTF3C4 REV__ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.78076171875 2 605.779687 1209.54482 0.61565 0.00037295 -0.18379 -0.00011134 0.43186 0.00026161 605.7793264910002 64.836 0.30087 64.836 64.677 64.978 7.6294E-06 31 14 3 0 0 0 0.46131 1 35519 35519 18.373 1.2602 1 5054600 + 31114 19495 20407 20815 36936 36936 -0.051569116190648856 LDQGPNHVDCI 11 Unmodified _LDQGPNHVDCI_ 0 0 0 REV__ENSG00000125484|ENST00000372146|GTF3C4 REV__ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 605.779687 1209.54482 0.61565 0.00037295 -0.18379 -0.00011134 0.43186 0.00026161 605.7793264910002 64.836 0.30087 64.836 64.677 64.978 7.6294E-06 -0.028203 0.00020064 NaN 23.79 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5054600 + 31115 19495 20407 20815 -0.051569116190648856 LDQLIAAPL 9 Unmodified _LDQLIAAPL_ 0 0 0 ENST00000536221.1_8:145474248-145485625:+|nuORF ENST00000536221.1_8:145474248-145485625:+|nuORF ENST00000536221.1_8:145474248-145485625:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2860107421875 2 477.286943 952.559333 0.94509 0.00045108 -0.90671 -0.00043276 0.038374 1.8316E-05 477.28648923767395 79.425 0.39072 78.936 78.727 79.117 -0.48932 28 16 2 0 0 0 0.34999 1 43478 43478 14.838 0.25658 1 1429800 31116 14979 20408 20816 36937 36937 0.08115528591372367 LDQNIEASSY 10 Unmodified _LDQNIEASSY_ 0 0 0 REV__nc|ENSG00000164970|Q8IW50-3|FAM219A REV__nc|ENSG00000164970|Q8IW50-3|FAM219A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2635498046875 2 570.264393 1138.51423 0.33869 0.00019314 -2.4951 -0.0014229 -2.1564 -0.0012297 570.2627456625606 70.385 0.25603 69.906 69.738 69.994 -0.47903 30 13 3 0 0 0 0.64628 1 38485 38485 8.7454 0.15213 1 5132500 + 31117 29755 20409 20817 36938 36938 -0.049483667324466296 LDQPDPVWQEE 11 Unmodified _LDQPDPVWQEE_ 0 0 0 REV__nc|ENSG00000167528|Q96N77-2|ZNF641 REV__nc|ENSG00000167528|Q96N77-2|ZNF641 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 678.30859375 2 678.309332 1354.60411 -0.0041095 -2.7875E-06 0.25561 0.00017338 0.2515 0.0001706 678.3092828828277 50.326 0.32249 50.326 50.134 50.456 0 31 14 3 0 0 0 0.69316 1 27694 27694 4.897 0.36815 1 5130300 + 31118 22215 20410 20818 36939 36939 -0.0590073712389767 LDQSDSDFHGD 11 Unmodified _LDQSDSDFHGD_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.2437133789062 2 618.244189 1234.47382 0.91479 0.00056557 -1.2309 -0.00076102 -0.31614 -0.00019545 618.2435897394464 89.877 0.37836 83.701 83.47 83.848 -6.1757 30 20 2 0 0 0 0.66428 1 59355 59355 7.609 0.50723 1 5028300 31119 721 20411 20819 36940 36940 -0.13403333122892036 LDRAVGTL 8 Unmodified _LDRAVGTL_ 0 0 0 REV__ENSG00000164077|ENST00000296473|MON1A REV__ENSG00000164077|ENST00000296473|MON1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7485961914062 2 422.747985 843.481417 1.439 0.00060834 0.40602 0.00017164 1.845 0.00077999 422.74815769888323 36.05 0.33975 31.857 31.678 32.018 -4.1928 37 20 2 0 0 0 0.22971 1 21113 21113 65.235 0.9987 1 11739000 + 31120 21861 20412 20820 36941 36941 0.05341515726013313 LDRCFQEML 9 Unmodified _LDRCFQEML_ 0 0 0 ENSG00000124374|ENST00000244221|PAIP2B ENSG00000124374|ENST00000244221|PAIP2B ENSG00000124374|ENST00000244221|PAIP2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7708740234375 2 577.770277 1153.526 NaN NaN NaN NaN NaN NaN NaN 65.224 1 65.224 64.724 65.724 0 0 0 0 0.82739 1 36384 36384 4.3292 0 1 31121 3781 20413 20821 36942 36942 -0.04462164514484357 LDRCMMWRRWM 11 Unmodified _LDRCMMWRRWM_ 0 0 0 ENST00000393104.6_1_10:112641263-112642826:+|nuORF ENST00000393104.6_1_10:112641263-112642826:+|nuORF ENST00000393104.6_1_10:112641263-112642826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 792.3660888671875 2 792.364361 1582.71417 NaN NaN NaN NaN NaN NaN NaN 71.096 1 70.618 70.118 71.118 -0.47735 0 0 0 0.94301 1 38908 38908 0.35063 0 1 31122 12696 20414 20822 36943 36943 -0.05387953133367773 LDRDKEEKT 9 Unmodified _LDRDKEEKT_ 0 0 0 REV__ENSG00000156860|ENST00000356166|FBRS REV__ENSG00000156860|ENST00000356166|FBRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5321350097656 3 378.531415 1132.57242 -0.55522 -0.00021017 0.72663 0.00027505 0.17141 6.4883E-05 378.5316804465158 15.095 0.19978 15.081 14.962 15.162 -0.014067 168 65 3 0 0 0 0.52844 1 7337 7337 3.5871 1.3343 1 1576400 + 31123 21348 20415 20823 36944 36944 0.011433149128151854 LDRDPFHPYY 10 Unmodified _LDRDPFHPYY_ 0 0 0 REV__ENST00000496527.1_1_3:184098136-184098919:+|nuORF REV__ENST00000496527.1_1_3:184098136-184098919:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.5438232421875 3 441.543655 1321.60914 0.82531 0.00036441 0.016849 7.4394E-06 0.84216 0.00037185 441.5437500205036 43.136 0.35933 38.371 38.146 38.505 -4.7648 43 23 3 0 0 0 0.57893 1 26107 26107 7.4771 0.85361 1 21044000 + 31124 27966 20416 20824 36945 36945 -0.03880388470611251 LDRDRAAVTAL 11 Unmodified _LDRDRAAVTAL_ 0 0 0 REV__nc|ENSG00000136099|O95206-2|PCDH8 REV__nc|ENSG00000136099|O95206-2|PCDH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8942260742188 3 400.894688 1199.66223 NaN NaN NaN NaN NaN NaN NaN 18.91 1 18.916 18.416 19.416 0.0060463 0 0 0 0.81193 1 9601 9601 6.2344 0.71106 1 + 31125 20135 20417 20825 36946 36946 0.07038989312036392 LDRFAQNPPLF 11 Unmodified _LDRFAQNPPLF_ 0 0 0 nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-10|OPRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9030151367188 3 439.903183 1316.68772 0.025521 1.1227E-05 -0.27014 -0.00011884 -0.24462 -0.00010761 439.90300039006814 53.517 0.13808 53.454 53.361 53.499 -0.063423 10 6 2 0 0 0 0.66568 1 29046 29046 7.4771 1.6089 1 3451500 31126 16121 20418 20826 36947 36947 0.042044638344577834 LDRFAQNPPLF 11 Unmodified _LDRFAQNPPLF_ 0 0 0 nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-10|OPRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9034118652344 3 439.903183 1316.68772 0.62611 0.00027543 -0.96137 -0.00042291 -0.33526 -0.00014748 440.2371920046313 54.851 0.17571 54.783 54.703 54.879 -0.067783 12 8 2 0 0 0 0.73237 1 29822 29822 1.2148 0 1 1162300 31127 16121 20418 20826 36948 36948 0.042044638344577834 LDRFKFFLS 9 Unmodified _LDRFKFFLS_ 0 0 0 ENSG00000163568|ENST00000368130|AIM2 ENSG00000163568|ENST00000368130|AIM2 ENSG00000163568|ENST00000368130|AIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5534362792969 3 391.553603 1171.63898 0.17446 6.8309E-05 0.25777 0.00010093 0.43223 0.00016924 391.5536876912971 61.966 0.43122 61.933 61.691 62.122 -0.032787 75 21 5 0 0 0 0.39143 1 33747 33747 12.873 2.0731 1 97596000 31128 7020 20419 20827 36949 36949 0.06002595265385935 LDRFRRHD 8 Unmodified _LDRFRRHD_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8662109375 3 372.200334 1113.57917 0.018399 6.8482E-06 1.3116 0.00048818 1.33 0.00049503 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.80383 2 18725 18725;19187 2.9952 0.71247 1 285750000 + 31129 20387 20420 20828 36950;36951 36950 0.02692717374725362 LDRFYHLTEP 10 Unmodified _LDRFYHLTEP_ 0 0 0 REV__ENSG00000080511|ENST00000591589|RDH8 REV__ENSG00000080511|ENST00000591589|RDH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8877258300781 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 47.003 1 47.003 46.503 47.503 0 0 0 0 0.96981 1 25720 25720 1.9064 0 1 + 31130 17666 20421 20829 36952 36952 0.0072018456346540916 LDRIHDQLL 9 Unmodified _LDRIHDQLL_ 0 0 0 REV__ENSG00000184743|ENST00000398868|ATL3 REV__ENSG00000184743|ENST00000398868|ATL3 MSMS AL20221201_MKP_PDAC_01 4 561.8193359375 2 561.81693 1121.61931 NaN NaN NaN NaN NaN NaN NaN 79.264 1 73.088 72.588 73.588 -6.1757 0 0 0 0.16996 1 51932 51932 34.402 2.0962 1 + 31131 23441 20422 20830 36953 36953 0.06336219254626485 LDRIHDQLL 9 Unmodified _LDRIHDQLL_ 0 0 0 REV__ENSG00000184743|ENST00000398868|ATL3 REV__ENSG00000184743|ENST00000398868|ATL3 MSMS AL20221201_MKP_PDAC_01 4 561.81982421875 2 561.81693 1121.61931 NaN NaN NaN NaN NaN NaN NaN 79.799 1 73.623 73.123 74.123 -6.1757 0 0 0 0.074615 1 52322 52322 49.933 0 1 + 31132 23441 20422 20830 36954 36954 0.06336219254626485 LDRLRKKRHLL 11 Unmodified _LDRLRKKRHLL_ 0 0 0 ENSG00000178605|ENST00000326153|GTPBP6 ENSG00000178605|ENST00000326153|GTPBP6 ENSG00000178605|ENST00000326153|GTPBP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 724.4710083007812 2 724.470244 1446.92593 NaN NaN NaN NaN NaN NaN NaN 94.244 1 94.244 93.744 94.744 0 0 0 0 0.9435 1 52096 52096 0 0 1 31133 8761 20423 20831 36955 36955 0.22034869207413976 LDRNCPSPVL 10 Unmodified _LDRNCPSPVL_ 0 0 0 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8625183105469 3 371.862219 1112.56483 0.55617 0.00020682 0.79806 0.00029677 1.3542 0.00050359 371.8624879456589 64.884 0.3374 64.884 64.739 65.077 7.6294E-06 31 16 3 0 0 0 0.65773 1 35540 35540 7.0371 0 1 6401500 31134 8895 20424 20832 36956 36956 0.013048841115278265 LDRPGCCD 8 Unmodified _LDRPGCCD_ 0 0 0 REV__ENST00000488024.1_1_3:50374973-50378236:-|nuORF REV__ENST00000488024.1_1_3:50374973-50378236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 878.783447265625 1 878.349499 877.342222 0.43344 0.00038071 0.80768 0.00070942 1.2411 0.0010901 878.3473435440106 28.162 0.15598 28.192 28.106 28.262 0.029566 6 5 2 0 0 0 0.80975 1 14682 14682 0.79363 0 1 1121400 + 31135 17430 20425 20833 36957 36957 -0.10135513225338855 LDRQKSPVY 9 Unmodified _LDRQKSPVY_ 0 0 0 REV__ENSG00000172725|ENST00000341356|CORO1B REV__ENSG00000172725|ENST00000341356|CORO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7498779296875 2 553.303655 1104.59276 -0.37538 -0.0002077 -0.40096 -0.00022185 -0.77635 -0.00042956 553.3033685182376 28.334 0.38953 28.334 28.189 28.579 0 51 21 3 0 0 0 0.32871 1 14689 14689 15.847 4.2069 1 9548900 + 31136 22668 20426 20834 36958 36958 0.044645303632933064 LDRQVPDL 8 Unmodified _LDRQVPDL_ 0 0 0 REV__ENST00000586068.5_1_19:37721355-37726669:+|nuORF REV__ENST00000586068.5_1_19:37721355-37726669:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2638549804688 2 478.263999 954.513445 NaN NaN NaN NaN NaN NaN NaN 60.775 1 60.775 60.275 61.275 0 0 0 0 0.97444 1 33892 33892 4.756 0 1 + 31137 23701 20427 20835 36959 36959 0.03436883409131042 LDRWDSGPAL 10 Unmodified _LDRWDSGPAL_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1930541992188 3 377.192734 1128.55637 -0.61187 -0.00023079 0.43113 0.00016262 -0.18074 -6.8173E-05 377.19290156251117 33.904 0.27897 33.904 33.765 34.044 0 34 13 3 0 0 0 0.57893 1 17793 17793 14.957 7.8554 1 15495000 + 31138 19746 20428 20836 36960 36960 -0.002763465334282955 LDRYLEPFK 9 Unmodified _LDRYLEPFK_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8233032226562 2 590.821681 1179.62881 1.0258 0.00060606 -1.337 -0.00078993 -0.31122 -0.00018387 590.8209333925438 94.039 0.92574 87.863 87.555 88.481 -6.1757 164 53 4 0 0 0 0.10247 1 62260 62260 32.786 3.7041 1 342760000 + 31139 21218 20429 20837 36961 36961 0.04617987540109425 LDRYPPQSF 9 Unmodified _LDRYPPQSF_ 0 0 0 REV__ENSG00000178395|ENST00000366875|CCDC185 REV__ENSG00000178395|ENST00000366875|CCDC185 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7832641601562 2 561.782556 1121.55056 0.80672 0.0004532 0.65537 0.00036818 1.4621 0.00082138 561.78276326237 47.608 0.36671 47.255 47.064 47.431 -0.3526 53 17 4 0 0 0 0.11784 1 25582 25582 31.268 2.7815 1 20548000 + 31140 23041 20430 20838 36962 36962 -0.005354450451022785 LDRYYTPTI 9 Unmodified _LDRYYTPTI_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2999877929688 2 571.298039 1140.58152 1.4573 0.00083257 -1.742 -0.00099523 -0.28471 -0.00016266 571.2967867428092 96.541 0.30344 90.366 90.203 90.506 -6.1757 38 17 3 0 0 0 0.41742 1 63938 63938 11.64 2.8949 1 63860000 31141 3924 20431 20839 36963 36963 0.016857082691331016 LDSALDLW 8 Unmodified _LDSALDLW_ 0 0 0 ENST00000597076.5_1_19:17881245-17885205:+|nuORF ENST00000597076.5_1_19:17881245-17885205:+|nuORF ENST00000597076.5_1_19:17881245-17885205:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.47021484375 1 932.472374 931.465098 1.1821 0.0011023 -0.62013 -0.00057825 0.56195 0.000524 932.4721477835977 86.097 0.32774 79.921 79.709 80.037 -6.1757 26 17 2 0 0 0 0.26159 1 56654 56654 60.39 6.814 1 9037800 31142 15773 20432 20840 36964 36964 -0.0033761023075840058 LDSAMQEKE 9 Unmodified _LDSAMQEKE_ 0 0 0 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 ENSG00000169583|ENST00000494426|CLIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7407836914062 2 525.742239 1049.46993 -0.43307 -0.00022768 -3.1457 -0.0016538 -3.5788 -0.0018815 525.741085826772 41.713 0.23197 41.407 41.283 41.515 -0.30682 18 10 2 0 0 0 0.047196 1 22117 22117 46.021 6.0636 1 10182000 31143 7886 20433 20841 36965 36965 -0.05283094150308898 LDSAPLPF 8 Unmodified _LDSAPLPF_ 0 0 0 ENST00000526600.1_1_11:12960600-12960762:+|nuORF REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.88427734375 1 859.455996 858.448719 -0.15779 -0.00013562 0.50425 0.00043338 0.34646 0.00029777 859.4560878946165 94.139 0.26254 93.719 93.593 93.856 -0.42043 22 15 2 0 0 0 8.7369 1 51476 51476 19.439 1.304 1 556150 + 31144 24387 20434 20842 36966 36966 0.013833086031468156 LDSEKSTSCL 10 Unmodified _LDSEKSTSCL_ 0 0 0 ENSG00000204767|ENST00000377365|INSYN2B ENSG00000204767|ENST00000377365|INSYN2B ENSG00000204767|ENST00000377365|INSYN2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5069274902344 3 361.50599 1081.49614 0.91189 0.00032965 0.12098 4.3734E-05 1.0329 0.00037339 361.5060326878011 24.176 0.25535 21.349 21.213 21.469 -2.8273 20 13 2 0 0 0 0.54684 1 13129 13129 12.175 3.7304 1 3977000 31145 10326 20435 20843 36967 36967 -0.04134824978814322 LDSGALVVDR 10 Unmodified _LDSGALVVDR_ 0 0 0 REV__ENST00000417778.5_1_2:71560018-71568857:+|nuORF REV__ENST00000417778.5_1_2:71560018-71568857:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1044.582885742188 1 1044.5684 1043.56112 1.2283 0.0012831 2.6554 0.0027738 3.8837 0.0040568 1044.576076725624 58.613 0.08839 52.538 52.492 52.58 -6.0745 6 4 2 0 0 0 0.52888 1 37536 37536 14.838 4.7643 1 6106500 + 31146 26794 20436 20844 36968 36968 0.04108537609317864 LDSHILDYYEN 11 Unmodified _LDSHILDYYEN_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3176879882812 2 691.317157 1380.61976 0.17706 0.00012241 0.11644 8.0498E-05 0.2935 0.0002029 691.317226599959 57.968 0.51739 57.968 57.716 58.233 0 83 21 5 0 0 0 0.59689 1 32165 32165 11.495 3.3392 1 62461000 31147 4556 20437 20845 36969 36969 -0.05532450606870043 LDSHILDYYEN 11 Unmodified _LDSHILDYYEN_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.3187866210938 2 691.317157 1380.61976 0.21148 0.0001462 -0.28215 -0.00019506 -0.070676 -4.886E-05 691.3169165229767 58.679 0.61324 58.188 57.839 58.453 -0.49079 107 29 5 0 0 0 0.65108 1 31809 31809 8.7454 0.58988 1 140490000 31148 4556 20437 20845 36970 36970 -0.05532450606870043 LDSHILDYYEN 11 Unmodified _LDSHILDYYEN_ 0 0 0 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 ENSG00000134077|ENST00000452837|THUMPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.3170166015625 2 691.317157 1380.61976 0.83139 0.00057475 -0.21875 -0.00015123 0.61264 0.00042353 691.3167447170798 58.229 0.3148 58.168 58.058 58.373 -0.060719 46 15 4 0 0 0 0.6889 1 31788 31788 5.2969 0.39987 1 11250000 31149 4556 20437 20845 36971 36971 -0.05532450606870043 LDSKKKQHLF 10 Unmodified _LDSKKKQHLF_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2432861328125 3 415.243429 1242.70846 0.030217 1.2548E-05 -1.2198 -0.00050653 -1.1896 -0.00049398 415.5772533625498 38.633 0.36196 38.645 38.538 38.9 0.011456 26 17 2 0 0 0 0.68844 1 20496 20496 4.1895 0.31317 1 1904800 31150 1392 20438 20846 36972 36972 0.09681054214138385 LDSLAETWDF 10 Unmodified _LDSLAETWDF_ 0 0 0 ENST00000432916.5_1_22:45122508-45132738:+|nuORF;nc|ENSG00000186654|P85299-2|PRR5;nc|ENSG00000186654|P85299-4|PRR5;ENST00000455389.3_1_22:45126703-45133124:+|nuORF;nc|ENSG00000186654|P85299-3|PRR5;ENSG00000186654|ENST00000336985|PRR5;ENST00000495017.5_1_22:45127230-45133124:+|nuORF;nc|ENSG00000186654|P85299-5|PRR5 ENST00000432916.5_1_22:45122508-45132738:+|nuORF ENST00000432916.5_1_22:45122508-45132738:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7763671875 2 598.777136 1195.53972 0.15072 9.025E-05 -0.33925 -0.00020313 -0.18853 -0.00011288 598.7770717139298 67.997 0.24969 67.997 67.875 68.124 0 19 12 2 0 0 0 0.69064 1 37900 37900 3.9444 0 1 536780 31151 9495 20439 20847 36973 36973 -0.05022892210035934 LDSLAWLLA 9 Unmodified _LDSLAWLLA_ 0 0 0 REV__NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant REV__NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7889709472656 2 501.286943 1000.55933 0.13536 6.7856E-05 1.9755 0.0009903 2.1109 0.0010582 501.28778749974447 92.274 0.29373 91.793 91.587 91.88 -0.48093 20 12 2 0 0 0 0.58865 1 50445 50445 2.0598 0 1 511020 + 31152 23257 20440 20848 36974 36974 0.05907528591387745 LDSLAWLLA 9 Unmodified _LDSLAWLLA_ 0 0 0 REV__NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant REV__NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.286943 1000.55933 0.13536 6.7856E-05 1.9755 0.0009903 2.1109 0.0010582 501.28778749974447 92.274 0.29373 91.793 91.587 91.88 -0.48093 0 0 NaN 2.0598 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 511020 + 31153 23257 20440 20848 0.05907528591387745 LDSLQGPP 8 Unmodified _LDSLQGPP_ 0 0 0 REV__ENST00000511288.1_1_17:48545715-48548505:+|nuORF REV__ENST00000511288.1_1_17:48545715-48548505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.4301147460938 1 826.430509 825.423233 0.18151 0.00015001 1.3311 0.0011001 1.5126 0.0012501 826.4321097609337 67.237 0.23208 67.237 67.085 67.317 0 14 9 2 0 0 0 0.61462 1 37476 37476 24.674 6.5389 1 638200 + 31154 28080 20441 20849 36975 36975 0.0035383408071538724 LDSLTWIEY 9 Unmodified _LDSLTWIEY_ 0 0 0 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2850952148438 2 570.284597 1138.55464 0.499 0.00028457 -0.035838 -2.0438E-05 0.46316 0.00026413 570.2844757268927 72.656 0.49189 72.656 72.433 72.925 0 72 22 4 0 0 0 0.58466 1 40593 40593 2.3027 0 1 14841000 31155 2461 20442 20850 36976 36976 -0.009094003420614172 LDSPEPVF 8 Unmodified _LDSPEPVF_ 0 0 0 REV__ENSG00000183067|ENST00000380588|IGSF5 REV__ENSG00000183067|ENST00000380588|IGSF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.44384765625 1 903.445825 902.438549 -0.026387 -2.384E-05 -0.68738 -0.00062101 -0.71377 -0.00064485 903.4449977660116 62.246 1.0942 62.246 61.728 62.823 0 75 57 2 0 0 0 0.61462 1 34449 34449 24.674 10.092 1 3251200 + 31156 23317 20443 20851 36977 36977 -0.01657299122086897 LDSPRFPF 8 Unmodified _LDSPRFPF_ 0 0 0 REV__nc|ENSG00000107537|O14832-2|PHYH REV__nc|ENSG00000107537|O14832-2|PHYH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2251892089844 2 489.75581 977.497067 0.95481 0.00046762 1.3717 0.00067179 2.3265 0.0011394 489.7558482064393 49.748 0.3126 49.355 49.138 49.451 -0.3923 34 15 3 0 0 0 8.7369 1 26758 26758 16.942 8.349 1 5058700 + 31157 18563 20444 20852 36978 36978 0.007418022430556448 LDSPSCLDAQP 11 Unmodified _LDSPSCLDAQP_ 0 0 0 REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF REV__ENST00000485071.2_1_7:100172732-100173215:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8355102539062 2 573.260796 1144.50704 0.67225 0.00038537 -2.1925 -0.0012569 -1.5202 -0.0008715 573.7617555046724 83.877 0.1058 83.378 83.313 83.418 -0.49961 7 3 3 0 0 0 0.29445 1 45896 45896 10.8 2.0541 1 291180 + 31158 27771 20445 20853 36979 36979 -0.059434226045596006 LDSPSYVLY 9 Unmodified _LDSPSYVLY_ 0 0 0 ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA ENSG00000168522|ENST00000302279|FNTA ENSG00000168522|ENST00000302279|FNTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7672119140625 2 528.76604 1055.51753 0.5057 0.0002674 -0.096725 -5.1145E-05 0.40898 0.00021625 528.7659975254954 68.942 0.56998 68.942 68.656 69.226 0 59 24 4 0 0 0 0.30562 1 38316 38316 16.942 9.0321 1 8847800 31159 7774 20446 20854 36980 36980 -0.00801071887804028 LDSQRCAWRR 10 Unmodified _LDSQRCAWRR_ 0 0 0 ENST00000526180.5_2_11:111781130-111782261:-|nuORF ENST00000526180.5_2_11:111781130-111782261:-|nuORF ENST00000526180.5_2_11:111781130-111782261:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8877258300781 3 430.88765 1289.64112 NaN NaN NaN NaN NaN NaN NaN 70.137 1 70.137 69.637 70.637 0 0 0 0 1.0019 1 39082 39082 0.15932 0 1 31160 14812 20447 20855 36981 36981 0.007887007315048322 LDSVISMT 8 Unmodified _LDSVISMT_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MSMS AL20221201_MKP_PDAC_01 4 433.221435546875 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 100.85 1 94.679 94.179 95.179 -6.1757 0 0 0 0.97444 1 67552 67552 5.2307 0 1 31161 7270 20448 20856 36982 36982 -0.011366588567625513 LDSVMSTI 8 Unmodified _LDSVMSTI_ 0 0 0 REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2222595214844 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 75.763 1 69.587 69.087 70.087 -6.1757 0 0 0 0.97444 1 49553 49553 5.2307 0 1 + 31162 27831 20449 20857 36983 36983 -0.011366588567625513 LDSVMSTI 8 Unmodified _LDSVMSTI_ 0 0 0 REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.222900390625 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 76.865 1 70.689 70.189 71.189 -6.1757 0 0 0 0.97444 1 50273 50273 5.2307 0 1 + 31163 27831 20449 20857 36984 36984 -0.011366588567625513 LDSVMSTI 8 Unmodified _LDSVMSTI_ 0 0 0 REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2220153808594 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 78.895 1 72.719 72.219 73.219 -6.1757 0 0 0 0.93587 1 51675 51675 13.508 0 1 + 31164 27831 20449 20857 36985 36985 -0.011366588567625513 LDSVMSTI 8 Unmodified _LDSVMSTI_ 0 0 0 REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2241516113281 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 92.262 1 86.086 85.586 86.586 -6.1757 0 0 0 0.95607 1 61009 61009 9.3474 0 1 + 31165 27831 20449 20857 36986 36986 -0.011366588567625513 LDSVMSTI 8 Unmodified _LDSVMSTI_ 0 0 0 REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF REV__ENST00000487671.1_1_22:31840579-31845472:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.2220764160156 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 95.781 1 89.606 89.106 90.106 -6.1757 0 0 0 0.93587 1 63447 63447 13.508 4.1604 1 + 31166 27831 20449 20857 36987 36987 -0.011366588567625513 LDSWFMSQHWY 11 Unmodified _LDSWFMSQHWY_ 0 0 0 REV__nc|ENSG00000156709|O95831-5|AIFM1 REV__nc|ENSG00000156709|O95831-5|AIFM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 750.32275390625 2 750.324262 1498.63397 NaN NaN NaN NaN NaN NaN NaN 45.236 1 45.236 44.736 45.736 0 0 0 0 0.94165 1 24646 24646 1.3295 0.13619 1 + 31167 21342 20450 20858 36988 36988 -0.09540076659527585 LDTDFIVL 8 Unmodified _LDTDFIVL_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 935.5072631835938 1 935.508425 934.501149 0.30682 0.00028703 -0.12543 -0.00011734 0.18139 0.0001697 935.5081113014219 96.878 0.34212 96.574 96.414 96.756 -0.30472 50 20 3 0 0 0 0.5953 1 52974 52974 26.341 0 1 2236600 31168 4056 20451 20859 36989 36989 0.031278469460858105 LDTFAVDRETE 11 Unmodified _LDTFAVDRETE_ 0 0 0 REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10 REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.3086547851562 2 648.309332 1294.60411 -0.64274 -0.00041669 0.37375 0.0002423 -0.26899 -0.00017439 648.8111858252767 31.921 0.30239 31.921 31.7 32.002 0 27 14 3 0 0 0 0.56973 1 16647 16647 12.873 4.1272 1 1337200 + 31169 20119 20452 20860 36990 36990 -0.03140737123908366 LDTIKKKLL 9 Unmodified _LDTIKKKLL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1071.717041015625 1 1071.71361 1070.70633 0.68412 0.00073318 1.6756 0.0017958 2.3598 0.002529 1071.7157616881886 48.578 0.11723 48.534 48.455 48.573 -0.04369 6 5 2 0 0 0 0.61256 1 26227 26227 0.6015 0 1 900520 + 31170 21094 20453 20861 36991 36991 0.173806254763349 LDTIRNSISF 10 Unmodified _LDTIRNSISF_ 0 0 0 REV__nc|ENSG00000143147|Q8N6U8-3|GPR161 REV__nc|ENSG00000143147|Q8N6U8-3|GPR161 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2844848632812 2 583.31422 1164.61389 -1.1526 -0.00067233 -0.99568 -0.0005808 -2.1483 -0.0012531 583.3136013203191 32.546 0.15758 32.546 32.481 32.639 0 17 8 3 0 0 0 0.23634 1 16988 16988 6.7232 0 1 2608700 + 31171 20606 20454 20862 36992 36992 0.03816495672117526 LDTLEITP 8 Unmodified _LDTLEITP_ 0 0 0 ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.248046875 2 451.247483 900.480414 0.71798 0.00032399 1.2376 0.00055845 1.9556 0.00088244 451.2480460813368 62.878 0.35175 62.857 62.717 63.069 -0.021614 42 17 3 0 0 0 0.40035 1 34364 34364 44.407 2.3125 1 13603000 31172 12420 20455 20863 36993 36993 0.026192565664246104 LDTLEITP 8 Unmodified _LDTLEITP_ 0 0 0 ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.2488098144531 2 451.247483 900.480414 NaN NaN NaN NaN NaN NaN NaN 85.202 1 79.026 78.526 79.526 -6.1757 0 0 0 0.4637 1 56099 56099 44.407 2.3125 1 31173 12420 20455 20863 36994 36994 0.026192565664246104 LDTLEITP 8 Unmodified _LDTLEITP_ 0 0 0 ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.247483 900.480414 0.23136 0.0001044 2.035 0.00091829 2.2664 0.0010227 451.24848768107165 63.307 0.26266 62.82 62.729 62.992 -0.48617 -0.018104 0.00051062 NaN 44.407 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 836420 31174 12420 20455 20863 0.026192565664246104 LDTLEITP 8 Unmodified _LDTLEITP_ 0 0 0 ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF ENST00000373647.8_1_9:125865619-125865802:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 451.247483 900.480414 0.71798 0.00032399 1.2376 0.00055845 1.9556 0.00088244 451.2480460813368 62.878 0.35175 62.857 62.717 63.069 -0.021614 0.018104 -0.00020905 NaN 44.407 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 13603000 31175 12420 20455 20863 0.026192565664246104 LDTPELAPL 9 Unmodified _LDTPELAPL_ 0 0 0 REV__ENST00000389301.7_1_16:89804327-89804663:-|nuORF REV__ENST00000389301.7_1_16:89804327-89804663:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7698669433594 2 484.768583 967.522613 1.1632 0.0005639 0.80039 0.000388 1.9636 0.0009519 484.7686051685138 89.009 0.36945 82.833 82.617 82.986 -6.1757 36 20 2 0 0 0 0.10734 1 58770 58770 32.305 3.8186 1 8287700 + 31176 26360 20456 20864 36995 36995 0.037552319747987895 LDTPNGVPGSH 11 Unmodified _LDTPNGVPGSH_ 0 0 0 REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A REV__nc|ENSG00000181350|Q8NAA5-2|LRRC75A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2673950195312 2 547.26727 1092.51999 0.078007 4.269E-05 0.29972 0.00016403 0.37772 0.00020672 547.2676029160745 17.724 0.23379 17.729 17.575 17.809 0.0050545 34 16 3 0 0 0 0.71036 1 8892 8892 3.2813 0 1 1343700 + 31177 29828 20457 20865 36996 36996 -0.022572234301151184 LDTQFIIDL 9 Unmodified _LDTQFIIDL_ 0 0 0 REV__ENSG00000182326|ENST00000360817|C1S REV__ENSG00000182326|ENST00000360817|C1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2957763671875 2 539.294965 1076.57538 1.288 0.00069464 0.3277 0.00017673 1.6157 0.00087136 539.2952974351585 97.375 0.53934 91.199 90.845 91.384 -6.1757 75 30 3 0 0 0 0.12424 1 64582 64582 30.637 2.1497 1 38521000 + 31178 23260 20458 20866 36997 36997 0.04015190037625871 LDTQGPPG 8 Unmodified _LDTQGPPG_ 0 0 0 nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572-4|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C;ENST00000564774.5_1_16:84214522-84215086:-|nuORF nc|ENSG00000103168|Q15572-5|TAF1C nc|ENSG00000103168|Q15572-5|TAF1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.6951599121094 2 392.695418 783.376283 NaN NaN NaN NaN NaN NaN NaN 22.877 1 22.877 22.377 23.377 0 0 0 0 0.97444 1 11647 11647 4.756 0 1 31179 2108 20459 20867 36998 36998 -0.02407025470415647 LDTRLQVFRQN 11 Unmodified _LDTRLQVFRQN_ 0 0 0 ENSG00000120662|ENST00000379480|MTRF1;nc|ENSG00000120662|O75570-2|MTRF1 ENSG00000120662|ENST00000379480|MTRF1 ENSG00000120662|ENST00000379480|MTRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.9241943359375 3 463.924759 1388.75245 0.43675 0.00020262 1.7166 0.00079637 2.1533 0.00099898 464.26004772549123 40.081 0.2972 40.086 39.915 40.212 0.0050545 31 13 3 0 0 0 0.68649 1 21341 21341 5.5233 0.80737 1 4651300 31180 3527 20460 20868 36999 36999 0.07362038640462742 LDTSAPQI 8 Unmodified _LDTSAPQI_ 0 0 0 REV__ENSG00000185567|ENST00000333244|AHNAK2 REV__ENSG00000185567|ENST00000333244|AHNAK2 MSMS AL20221201_MKP_PDAC_01 4 422.724853515625 2 422.724175 843.433798 NaN NaN NaN NaN NaN NaN NaN 24.839 1 21.956 21.456 22.456 -2.8831 0 0 0 0.51139 1 13550 13550 39.957 0 1 + 31181 23510 20461 20869 37000 37000 0.005818167351435477 LDTTEDPL 8 Unmodified _LDTTEDPL_ 0 0 0 REV__ENSG00000124570|ENST00000380539|SERPINB6 REV__ENSG00000124570|ENST00000380539|SERPINB6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2184753417969 2 452.218923 902.423293 NaN NaN NaN NaN NaN NaN NaN 46.983 1 46.983 46.483 47.483 0 0 0 0 0.95607 1 25707 25707 9.3474 0 1 + 31182 19456 20462 20870 37001 37001 -0.03182210709951505 LDTWSSLK 8 Unmodified _LDTWSSLK_ 0 0 0 ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-3|MCF2 ENSG00000101977|ENST00000519895|MCF2 ENSG00000101977|ENST00000519895|MCF2 MSMS AL20221201_MKP_PDAC_01 4 475.2532958984375 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 38.584 1 34.215 33.715 34.715 -4.3689 0 0 0 0.29029 1 22782 22782 64.236 8.0593 1 31183 2004 20463 20871 37002 37002 0.015340786605861467 LDTWTEFVEGK 11 Unmodified _LDTWTEFVEGK_ 0 0 0 nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4;ENST00000507059.5_1_5:180043993-180056331:-|nuORF;nc|ENSG00000037280|P35916-3|FLT4 nc|ENSG00000037280|P35916-1|FLT4 nc|ENSG00000037280|P35916-1|FLT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.5530395507812 3 442.218837 1323.63468 1.1915 0.00052691 -1.6157 -0.00071451 -0.42421 -0.00018759 442.2180376636906 99.994 0.16884 93.818 93.755 93.924 -6.1757 21 11 3 0 0 0 0.68427 1 66780 66780 4.7159 0 1 42002000 31184 626 20464 20872 37003 37003 -0.014189587388727887 LDVAEELL 8 Unmodified _LDVAEELL_ 0 0 0 REV__ENSG00000030066|ENST00000378460|NUP160 REV__ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7505187988281 2 451.247483 900.480414 0.23136 0.0001044 2.035 0.00091829 2.2664 0.0010227 451.24848768107165 63.307 0.26266 62.82 62.729 62.992 -0.48617 18 11 2 0 0 0 0.57045 1 34540 34540 28.487 0 1 836420 + 31185 17142 20465 20873 37004 37004 0.026192565664246104 LDVILTPETG 10 Unmodified _LDVILTPETG_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1057.755126953125 1 1057.57757 1056.57029 -0.030445 -3.2198E-05 2.0711 0.0021904 2.0407 0.0021582 1057.5816820666498 31.684 0.45826 31.555 31.408 31.866 -0.12915 31 18 3 0 0 0 0.23896 1 16610 16610 3.5965 0.70727 1 1990700 31186 7163;16335 20466 20874 37005 37005 0.0442688617499698 LDVLAVNMMY 10 Unmodified _LDVLAVNMMY_ 0 0 0 REV__ENSG00000125245|ENST00000397470|GPR18 REV__ENSG00000125245|ENST00000397470|GPR18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8630981445312 3 390.196211 1167.5668 NaN NaN NaN NaN NaN NaN NaN 17.345 1 17.359 16.859 17.859 0.013865 0 0 0 1.0024 1 8618 8618 0.13989 0 1 + 31187 19481 20467 20875 37006 37006 -0.01027823194863231 LDVSVTITL 9 Unmodified _LDVSVTITL_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7848510742188 2 480.784233 959.553913 1.3612 0.00065444 0.36595 0.00017594 1.7271 0.00083038 480.783832901423 90.596 0.47353 84.42 84.186 84.659 -6.1757 52 27 2 0 0 0 0.019303 1 59787 59787 64.236 0 1 17023000 31188 6354 20468 20876 37007 37007 0.07251805008922929 LDVTFYWTL 9 Unmodified _LDVTFYWTL_ 0 0 0 ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5 ENST00000528727.5_1_11:99426939-100095567:+|nuORF ENST00000528727.5_1_11:99426939-100095567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2970581054688 2 579.297507 1156.58046 0.68248 0.00039536 -1.1826 -0.00068509 -0.50014 -0.00028973 579.296962497752 82.215 0.36674 81.719 81.528 81.895 -0.4952 20 14 2 0 0 0 0.58466 1 45041 45041 2.3027 0 1 534940 31189 6047 20469 20877 37008 37008 0.008434939002199826 LDVVLEEHL 9 Unmodified _LDVVLEEHL_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1976318359375 3 356.197485 1065.57063 1.2893 0.00045925 -0.26862 -9.5682E-05 1.0207 0.00036357 356.19729400921585 28.313 0.44932 25.164 24.952 25.401 -3.1482 66 23 4 0 0 0 0.39863 1 15824 15824 8.1555 0 1 68733000 31190 3420 20470 20878 37009 37009 0.04046305894848956 LDWCGDPRAF 10 Unmodified _LDWCGDPRAF_ 0 0 0 ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MSMS AL20221201_MKP_PDAC_01 4 393.8480529785156 3 393.846569 1178.51788 NaN NaN NaN NaN NaN NaN NaN 92.954 1 86.778 86.278 87.278 -6.1757 0 0 0 0.92825 1 61494 61494 3.5871 0.95582 1 31191 2549 20471 20879 37010 37010 -0.0642397543961124 LDWEDESDTL 10 Unmodified _LDWEDESDTL_ 0 0 0 REV__ENST00000475010.5_1_7:140154319-140155077:-|nuORF REV__ENST00000475010.5_1_7:140154319-140155077:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.7605590820312 2 611.75914 1221.50373 0.11486 7.0269E-05 0.92922 0.00056846 1.0441 0.00063873 611.760353472163 65.089 0.24595 65.089 64.974 65.219 0 22 10 3 0 0 0 0.6606 1 36292 36292 7.2892 1.0834 1 977220 + 31192 19927 20472 20880 37011 37011 -0.09816394177551047 LDWFSYQY 8 Unmodified _LDWFSYQY_ 0 0 0 REV__ENSG00000146411|ENST00000275230|SLC2A12 REV__ENSG00000146411|ENST00000275230|SLC2A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2509765625 2 561.250557 1120.48656 0.51241 0.00028759 0.27276 0.00015309 0.78516 0.00044067 561.2507456018467 67.819 0.50338 67.819 67.621 68.124 0 62 24 3 0 0 0 0.74163 1 37875 37875 13.508 1.2672 1 3958400 + 31193 20833 20473 20881 37012 37012 -0.06886225202038077 LDWHPKYY 8 Unmodified _LDWHPKYY_ 0 0 0 ENST00000381095.7_2_X:6069163-6069220:-|nuORF ENST00000381095.7_2_X:6069163-6069220:-|nuORF ENST00000381095.7_2_X:6069163-6069220:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1811218261719 3 374.51867 1120.53418 -0.43623 -0.00016338 -2.5865 -0.00096869 -3.0227 -0.0011321 374.517784447377 20.615 0.15423 20.615 20.531 20.685 0 15 11 2 0 0 0 8.7369 1 10388 10388 1.8442 0 1 626430 31194 12612 20474 20882 37013 37013 -0.02126526211213786 LDWLFEASALY 11 Unmodified _LDWLFEASALY_ 0 0 0 REV__ENST00000528968.5_1_11:3009334-3010420:-|nuORF REV__ENST00000528968.5_1_11:3009334-3010420:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 664.3317260742188 2 664.332079 1326.6496 NaN NaN NaN NaN NaN NaN NaN 47.103 1 42.022 41.522 42.522 -5.0805 0 0 0 0.67092 1 29200 29200 18.146 0 1 + 31195 28416 20475 20883 37014 37014 -0.0006546687086483871 LDWPRMVESCL 11 Unmodified _LDWPRMVESCL_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L;ENST00000484069.1_1_X:64743438-64749476:-|nuORF nc|ENSG00000001497|Q9Y4W2-3|LAS1L nc|ENSG00000001497|Q9Y4W2-3|LAS1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.82421875 2 674.82304 1347.63153 -0.023414 -1.5801E-05 1.0307 0.00069556 1.0073 0.00067976 674.82353419948 78.556 0.35719 78.556 78.359 78.716 0 42 17 3 0 0 0 0.71618 1 43708 43708 2.7352 0.23671 1 1929600 31196 256 20476 20884 37015 37015 -0.028382483888663046 LDWSCRVF 8 Unmodified _LDWSCRVF_ 0 0 0 REV__ENST00000540449.5_1_2:70165905-70166184:+|nuORF REV__ENST00000540449.5_1_2:70165905-70166184:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.247802734375 2 513.247295 1024.48004 NaN NaN NaN NaN NaN NaN NaN 57.394 1 57.328 56.828 57.828 -0.066036 0 0 0 0.96305 1 31240 31240 7.9102 0 1 + 31197 28581 20477 20885 37016 37016 -0.03122441634423012 LDWYFRFDS 9 Unmodified _LDWYFRFDS_ 0 0 0 REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000138622|ENST00000261917|HCN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8612365722656 3 416.860984 1247.56112 -0.6802 -0.00028355 0.12057 5.0262E-05 -0.55962 -0.00023329 416.86106964138605 14.921 0.1306 14.921 14.816 14.946 0 53 34 2 0 0 0 0.61381 1 7083 7083 0.23584 0 1 602000 + 31198 20347;20657 20478 20886 37017 37017 -0.05275462390682151 LDWYFRFDS 9 Unmodified _LDWYFRFDS_ 0 0 0 REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000138622|ENST00000261917|HCN4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 416.860984 1247.56112 -0.6802 -0.00028355 0.12057 5.0262E-05 -0.55962 -0.00023329 416.86106964138605 14.921 0.1306 14.921 14.816 14.946 0 -0.034962 -0.00011609 NaN 0.23584 53 34 2 NaN NaN NaN NaN 0 NaN NaN 0 602000 + 31199 20347;20657 20478 20886 -0.05275462390682151 LDWYSRIDEE 10 Unmodified _LDWYSRIDEE_ 0 0 0 REV__ENSG00000174502|ENST00000367135|SLC26A9 REV__ENSG00000174502|ENST00000367135|SLC26A9 MSMS AL20221201_MKP_PDAC_01 4 663.34033203125 2 663.304049 1324.59355 NaN NaN NaN NaN NaN NaN NaN 102.37 1 96.197 95.697 96.697 -6.1757 0 0 0 0.97302 1 68700 68700 3.5965 0 1 + 31200 22797 20479 20887 37018 37018 -0.0557671977830978 LDYDQGLLI 9 Unmodified _LDYDQGLLI_ 0 0 0 nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 nc|ENSG00000116525|Q9BVG3-2|TRIM62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2796020507812 2 525.279315 1048.54408 0.27938 0.00014675 0.041047 2.1561E-05 0.32043 0.00016832 525.2792971965184 96.054 0.57699 95.749 95.501 96.078 -0.30472 83 32 3 0 0 0 0.2143 1 52558 52558 21.747 0 1 5927400 31201 3226 20480 20888 37019 37019 0.02174617003538515 LDYECYDGY 9 Unmodified _LDYECYDGY_ 0 0 0 nc|ENSG00000134365|Q92496-3|CFHR4;nc|ENSG00000134365|Q92496-2|CFHR4;ENSG00000134365|ENST00000608469|CFHR4 nc|ENSG00000134365|Q92496-3|CFHR4 nc|ENSG00000134365|Q92496-3|CFHR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8129272460938 3 380.81119 1139.41174 NaN NaN NaN NaN NaN NaN NaN 99.495 1 99.459 98.959 99.959 -0.036301 0 0 0 0.85737 1 55258 55258 0.26902 0.1097 1 31202 4600 20481 20889 37020 37020 -0.1523877579559212 LDYFYPQLQL 10 Unmodified _LDYFYPQLQL_ 0 0 0 nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.33447265625 2 650.334621 1298.65469 NaN NaN NaN NaN NaN NaN NaN 62.091 1 61.603 61.103 62.103 -0.48764 0 0 0 0.78298 1 33824 33824 13.042 0 1 31203 8884 20482 20890 37021 37021 0.01730836991760043 LDYHDRPDRNF 11 Unmodified _LDYHDRPDRNF_ 0 0 0 REV__ENST00000587300.1_1_19:39106832-39108535:-|nuORF REV__ENST00000587300.1_1_19:39106832-39108535:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2506713867188 3 483.228618 1446.66403 0.58896 0.0002846 -0.19362 -9.3565E-05 0.39534 0.00019104 483.22868588688976 53.624 0.19584 53.172 53.065 53.261 -0.45173 20 9 3 0 0 0 0.30558 1 29048 29048 1.1098 0 1 2309900 + 31204 18376 20483 20891 37022 37022 -0.04144001670010766 LDYIYMEAFDF 11 Unmodified _LDYIYMEAFDF_ 0 0 0 ENST00000261250.7_1_12:4598305-4598689:-|nuORF ENST00000261250.7_1_12:4598305-4598689:-|nuORF ENST00000261250.7_1_12:4598305-4598689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.8158569335938 2 713.815404 1425.61626 -0.010117 -7.2218E-06 -0.06506 -4.6441E-05 -0.075177 -5.3663E-05 714.3170029700525 89.882 0.35876 89.882 89.69 90.048 0 56 25 3 0 0 0 0.63851 1 49693 49693 9.3831 5.4387 1 1363400 31205 11234 20484 20892 37023 37023 -0.07952836705089794 LDYLWTSSL 9 Unmodified _LDYLWTSSL_ 0 0 0 ENSG00000283434|ENST00000637986|CSNKA2IP ENSG00000283434|ENST00000637986|CSNKA2IP ENSG00000283434|ENST00000637986|CSNKA2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.779541015625 2 549.279315 1096.54408 0.42769 0.00023492 -3.2897 -0.001807 -2.862 -0.001572 549.7783970593354 70.987 0.41861 70.51 70.286 70.705 -0.47735 38 18 3 0 0 0 0.54444 1 38944 38944 4.756 1.8668 1 2371600 31206 10953 20485 20893 37024 37024 -0.0003338299648021348 LDYPRMFEE 9 Unmodified _LDYPRMFEE_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5178527832031 3 400.51823 1198.53286 NaN NaN NaN NaN NaN NaN NaN 16.97 1 16.97 16.47 17.47 0 0 0 0 0.83812 1 8325 8325 2.9952 0.56046 1 + 31207 17243 20486 20894 37025 37025 -0.05846528362258141 LDYSSSVLF 9 Unmodified _LDYSSSVLF_ 0 0 0 REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF REV__ENST00000479290.5_1_19:39380134-39380626:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.75830078125 2 515.758215 1029.50188 0.85479 0.00044087 0.28418 0.00014657 1.139 0.00058743 515.758169284766 91.078 0.59519 84.903 84.593 85.188 -6.1757 92 34 3 0 0 0 0.078417 2 60148 60148;60281 38.151 7.9264 1 80225000 + 31208 27653 20487 20895 37026;37027 37026 -0.011693584048543926 LDYYPIDKL 9 Unmodified _LDYYPIDKL_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5372314453125 3 380.537619 1138.59103 -0.46843 -0.00017826 -0.43239 -0.00016454 -0.90082 -0.0003428 380.53742916076226 25.408 0.38113 25.408 25.147 25.528 0 44 18 3 0 0 0 0.32235 1 12977 12977 16.149 2.2431 1 6009100 + 31209 24360 20488 20896 37028 37028 0.027274765546508206 LEADPLET 8 Unmodified _LEADPLET_ 0 0 0 REV__ENSG00000166266|ENST00000393094|CUL5 REV__ENSG00000166266|ENST00000393094|CUL5 MSMS AL20221201_MKP_PDAC_01 4 444.2220458984375 2 444.221465 886.428378 NaN NaN NaN NaN NaN NaN NaN 74.354 1 68.178 67.678 68.678 -6.1757 0 0 0 0.69365 1 48613 48613 28.487 3.813 1 + 31210 22099 20489 20897 37029 37029 -0.019379068473313055 LEAGRNAHKED 11 Unmodified _LEAGRNAHKED_ 0 0 0 ENST00000237937.7_1_9:74970312-74970396:-|nuORF ENST00000237937.7_1_9:74970312-74970396:-|nuORF ENST00000237937.7_1_9:74970312-74970396:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 413.5840148925781 3 413.874064 1238.60036 0.7002 0.00028979 0.48018 0.00019873 1.1804 0.00048853 414.2098343446369 38.84 0.40082 34.39 34.164 34.565 -4.4509 35 25 2 0 0 0 0.27384 1 22961 22961 18.34 7.2744 1 8322100 31211 11094 20490 20898 37030 37030 -0.009393621071012603 LEAIPHGT 8 Unmodified _LEAIPHGT_ 0 0 0 ENST00000491442.5_1_1:42313786-42313885:-|nuORF ENST00000491442.5_1_1:42313786-42313885:-|nuORF ENST00000491442.5_1_1:42313786-42313885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2268676757812 2 419.226885 836.439217 0.011561 4.8468E-06 0.29657 0.00012433 0.30813 0.00012918 419.226994376447 79.03 0.51761 79.03 78.786 79.303 0 41 23 2 0 0 0 0.5284 2 43938 43840;43938 32.117 5.7757 1 1898200 31212 14281 20491 20899 37031;37032 37032 0.014455403176157233 LEAIPHGT 8 Unmodified _LEAIPHGT_ 0 0 0 ENST00000491442.5_1_1:42313786-42313885:-|nuORF ENST00000491442.5_1_1:42313786-42313885:-|nuORF ENST00000491442.5_1_1:42313786-42313885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2271118164062 2 419.226885 836.439217 0.93202 0.00039073 -0.61769 -0.00025895 0.31432 0.00013177 419.2265065608177 79.53 0.46133 79.041 78.796 79.257 -0.48933 34 19 2 0 0 0 0.61462 1 43507 43507 24.674 5.2349 1 1684600 31213 14281 20491 20899 37033 37033 0.014455403176157233 LEAKKAQW 8 Unmodified _LEAKKAQW_ 0 0 0 ENST00000484623.5_1_3:56601014-56627059:+|nuORF;ENST00000484441.1_1_3:56601014-56605354:+|nuORF;ENST00000494672.1_1_3:56600939-56606391:+|nuORF;nc|ENSG00000180376|A2RUB6-2|CCDC66;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66 ENST00000484623.5_1_3:56601014-56627059:+|nuORF ENST00000484623.5_1_3:56601014-56627059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2775268554688 2 487.276909 972.539266 0.55845 0.00027212 -0.026665 -1.2993E-05 0.53179 0.00025913 487.27683963750474 55.391 0.31638 54.913 54.753 55.069 -0.47798 41 14 3 0 0 0 0.48669 2 30005 30005;30110 36.044 5.8194 1 21941000 31214 8897 20492 20900 37034;37035 37034 0.0518977765142381 LEAKKAQW 8 Unmodified _LEAKKAQW_ 0 0 0 ENST00000484623.5_1_3:56601014-56627059:+|nuORF;ENST00000484441.1_1_3:56601014-56605354:+|nuORF;ENST00000494672.1_1_3:56600939-56606391:+|nuORF;nc|ENSG00000180376|A2RUB6-2|CCDC66;nc|ENSG00000180376|A2RUB6-3|CCDC66;ENSG00000180376|ENST00000394672|CCDC66 ENST00000484623.5_1_3:56601014-56627059:+|nuORF ENST00000484623.5_1_3:56601014-56627059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2767944335938 2 487.276909 972.539266 0.47652 0.0002322 0.42326 0.00020624 0.89978 0.00043844 487.2769291104398 55.069 0.25847 55.001 54.859 55.117 -0.068737 26 12 3 0 0 0 0.48669 1 29907 29907 36.044 1.9418 1 5085000 31215 8897 20492 20900 37036 37036 0.0518977765142381 LEAKLKSCLK 10 Unmodified _LEAKLKSCLK_ 0 0 0 REV__nc|nan|Q9BPX7-2|C7orf25 REV__nc|nan|Q9BPX7-2|C7orf25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.8628540039062 3 378.230132 1131.66857 0.61335 0.00023199 -1.228 -0.00046448 -0.61468 -0.00023249 378.22966495514186 23.06 0.34396 20.281 20.015 20.359 -2.7784 43 21 3 0 0 0 0.23325 1 12451 12451 5.7834 0.88642 1 17973000 + 31216 30052 20493 20901 37037 37037 0.1079979121921042 LEAPASLA 8 Unmodified _LEAPASLA_ 0 0 0 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2059631347656 2 386.215986 770.417419 -0.037938 -1.4652E-05 2.8665 0.0011071 2.8285 0.0010924 386.21697019234483 34.848 0.50031 34.875 34.753 35.253 0.027401 31 22 2 0 0 0 0.80232 1 18326 18326 5.2307 0 1 941990 + 31217 29743 20494 20902 37038 37038 0.02302735569048764 LEAPEALAEL 10 Unmodified _LEAPEALAEL_ 0 0 0 ENST00000306193.7_1_4:169931176-169931251:-|nuORF ENST00000306193.7_1_4:169931176-169931251:-|nuORF ENST00000306193.7_1_4:169931176-169931251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2844848632812 2 528.284597 1054.55464 0.40569 0.00021432 -0.10128 -5.3505E-05 0.30441 0.00016081 528.2844923977011 83.936 0.84914 83.936 83.315 84.165 0 82 44 4 0 0 0 0.33553 2 46576 46477;46576 25.399 4.4187 1 5248700 31218 11622 20495 20903 37039;37040 37040 0.029545996579372513 LEAPRSPVL 9 Unmodified _LEAPRSPVL_ 0 0 0 REV__ENSG00000002587|ENST00000002596|HS3ST1 REV__ENSG00000002587|ENST00000002596|HS3ST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2848510742188 2 491.290017 980.565481 0.45301 0.00022256 0.018654 9.1644E-06 0.47167 0.00023172 491.28983088107816 58.793 0.63594 58.302 57.943 58.579 -0.49079 99 30 6 0 0 0 0.36964 1 31826 31826 13.906 1.3745 1 130610000 + 31219 16934 20496 20904 37041 37041 0.07442046822893644 LEAQWEEF 8 Unmodified _LEAQWEEF_ 0 0 0 REV__ENSG00000042445|ENST00000295802|RETSAT REV__ENSG00000042445|ENST00000295802|RETSAT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2621459960938 2 526.24019 1050.46583 -0.29633 -0.00015594 -1.4981 -0.00078838 -1.7945 -0.00094432 526.2395667472888 78.483 0.19699 77.997 77.942 78.139 -0.48596 11 8 2 0 0 0 8.7369 1 42992 42992 18.135 4.6271 1 690960 + 31220 17206 20497 20905 37042 37042 -0.05738815581707968 LEAREETRELD 11 Unmodified _LEAREETRELD_ 0 0 0 REV__nc|ENSG00000143549|P06753-5|TPM3 REV__nc|ENSG00000143549|P06753-5|TPM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.8413696289062 2 680.838788 1359.66302 1.013 0.00068967 0.59555 0.00040547 1.6085 0.0010951 680.8395408561598 80.501 0.33957 74.326 74.085 74.424 -6.1757 49 18 3 0 0 0 0.13335 1 52724 52724 38.615 10.12 1 21341000 + 31221 20651 20498 20906 37043 37043 -0.002422608295773898 LEAREHLLHV 10 Unmodified _LEAREHLLHV_ 0 0 0 ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2324829101562 3 406.231412 1215.67241 NaN NaN NaN NaN NaN NaN NaN 64.626 1 64.626 64.126 65.126 0 0 0 0 0.98914 1 36043 36043 0.77653 0 1 31222 10238 20499 20907 37044 37044 0.07319597037258063 LEARERRP 8 Unmodified _LEARERRP_ 0 0 0 nc|ENSG00000146112|Q6NYC8-3|PPP1R18;nc|ENSG00000146112|Q6NYC8-2|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18 nc|ENSG00000146112|Q6NYC8-3|PPP1R18 nc|ENSG00000146112|Q6NYC8-3|PPP1R18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8189086914062 2 513.793789 1025.57303 0.39564 0.00020328 4.4878 0.0023058 4.8834 0.0025091 514.2980988223218 67.395 0.23053 66.913 66.822 67.053 -0.48219 10 9 2 0 0 0 8.7369 1 36870 36870 16.942 3.4344 1 395600 31223 5756 20500 20908 37045 37045 0.061261991431820206 LEASLGVHTY 10 Unmodified _LEASLGVHTY_ 0 0 0 ENSG00000143387|ENST00000271651|CTSK ENSG00000143387|ENST00000271651|CTSK ENSG00000143387|ENST00000271651|CTSK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.28076171875 2 545.282389 1088.55022 NaN NaN NaN NaN NaN NaN NaN 97.367 1 97.124 96.624 97.624 -0.24277 0 0 0 0.92825 1 53167 53167 6.7232 0.96273 1 31224 5506 20501 20909 37046 37046 0.009491352350551097 LEAVACQDNDD 11 Unmodified _LEAVACQDNDD_ 0 0 0 ENST00000411846.6_1_1:108815589-108826867:+|nuORF ENST00000411846.6_1_1:108815589-108826867:+|nuORF ENST00000411846.6_1_1:108815589-108826867:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 596.7450561523438 2 596.742967 1191.47138 NaN NaN NaN NaN NaN NaN NaN 96.851 1 90.675 90.175 91.175 -6.1757 0 0 0 0.88164 1 64184 64184 8.1555 0 1 31225 12980 20502 20910 37047 37047 -0.1166950485221605 LEAVSPDL 8 Unmodified _LEAVSPDL_ 0 0 0 ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.8891296386719 2 422.226551 842.438549 -0.59328 -0.0002505 2.4651 0.0010408 1.8718 0.00079031 422.22746990893916 56.11 0.33376 55.624 55.414 55.748 -0.48554 23 16 2 0 0 0 0.63229 1 30483 30483 23.148 0 1 6140500 31226 5372 20503 20911 37048 37048 0.011027008779137759 LEAVSPDL 8 Unmodified _LEAVSPDL_ 0 0 0 ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.226551 842.438549 -0.72343 -0.00030545 3.07 0.0012962 2.3466 0.00099078 422.2279569252713 55.645 0.30492 55.645 55.437 55.742 0 0.012551 -0.0002959 NaN 23.148 41 25 2 NaN NaN NaN NaN 0 NaN NaN 0 9669800 31227 5372 20503 20911 0.011027008779137759 LEAVSPDL 8 Unmodified _LEAVSPDL_ 0 0 0 ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT ENSG00000141744|ENST00000269582|PNMT MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.226551 842.438549 -0.2645 -0.00011168 3.9094 0.0016507 3.6449 0.001539 422.22821001138743 55.697 0.34402 55.629 55.477 55.821 -0.068737 -0.0041361 0.00041297 NaN 23.148 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 43435000 31228 5372 20503 20911 0.011027008779137759 LEAYNFSL 8 Unmodified _LEAYNFSL_ 0 0 0 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2504272460938 2 478.739825 955.465098 1.1149 0.00053377 -0.9044 -0.00043297 0.21054 0.00010079 478.73905134850276 79.664 0.26644 79.175 79.03 79.296 -0.48932 16 11 2 0 0 0 8.7369 1 43597 43597 9.3474 0 1 1145100 + 31229 29021 20504 20912 37049 37049 -0.01441610230756396 LECCVMCEY 9 Unmodified _LECCVMCEY_ 0 0 0 REV__nc|ENSG00000086102|Q12986-3|NFX1 REV__nc|ENSG00000086102|Q12986-3|NFX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2120056152344 3 364.800475 1091.3796 0.31982 0.00011667 0.21773 7.9427E-05 0.53755 0.0001961 364.8004772287708 38.995 0.40905 38.995 38.834 39.244 0 28 18 2 0 0 0 0.21906 1 20806 20806 0.23584 0.141 1 743290 + 31230 17765 20505 20913 37050 37050 -0.16243926066226777 LEDAGDLIF 9 Unmodified _LEDAGDLIF_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.749755859375 2 496.75039 991.486227 0.24449 0.00012145 0.67254 0.00033409 0.91703 0.00045554 496.75067579834285 84.306 0.42468 84.306 84.089 84.514 0 63 21 4 0 0 0 0.41742 1 46656 46656 11.64 2.2929 1 4122000 + 31231 22824 20506 20914 37051 37051 -0.009856449218887064 LEDCDDAFIF 10 Unmodified _LEDCDDAFIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2518310546875 2 594.249897 1186.48524 0.7 0.00041597 0.85375 0.00050734 1.5537 0.00092331 594.2504770063905 72.572 0.31345 72.096 71.938 72.251 -0.47609 39 14 4 0 0 0 0.62068 2 39697 39697;39799 10.074 2.1638 1 4831200 31232 4538 20507 20915 37052;37053 37052 -0.10054227353134593 LEDCDDAFIF 10 Unmodified _LEDCDDAFIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 594.249897 1186.48524 0.7 0.00041597 0.85375 0.00050734 1.5537 0.00092331 594.2504770063905 72.572 0.31345 72.096 71.938 72.251 -0.47609 0 0 NaN 10.074 39 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4831200 31233 4538 20507 20915 -0.10054227353134593 LEDEAVDKNI 10 Unmodified _LEDEAVDKNI_ 0 0 0 ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2885131835938 2 573.287868 1144.56118 1.1286 0.00064701 -2.5675 -0.0014719 -1.4389 -0.00082493 573.2853790302021 79.955 0.42313 79.465 79.164 79.587 -0.48932 38 17 4 0 0 0 0.69377 1 43858 43858 3.5965 0.31518 1 4203500 31234 10474 20508 20916 37054 37054 -0.00531507181312918 LEDEGPRIK 9 Unmodified _LEDEGPRIK_ 0 0 0 REV__nc|ENSG00000184634|Q93074-3|MED12 REV__nc|ENSG00000184634|Q93074-3|MED12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7896118164062 2 528.787838 1055.56112 NaN NaN NaN NaN NaN NaN NaN 62.347 1 62.347 61.847 62.847 0 0 0 0 0.36554 1 34773 34773 21.747 4.8044 1 + 31235 23432 20509 20917 37055 37055 0.035565376093245504 LEDFDPYY 8 Unmodified _LEDFDPYY_ 0 0 0 nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2259521484375 2 531.226748 1060.43894 -0.064536 -3.4283E-05 -3.2666 -0.0017353 -3.3311 -0.0017696 531.2263951588766 76.556 0.48154 76.077 75.932 76.413 -0.47945 75 28 4 0 0 0 0.72953 1 41900 41900 14.582 0.67564 1 5328100 31236 9878 20510 20918 37056 37056 -0.088859241928958 LEDFIKEFL 9 Unmodified _LEDFIKEFL_ 0 0 0 ENST00000327490.7_1_17:74266610-74266811:+|nuORF ENST00000327490.7_1_17:74266610-74266811:+|nuORF ENST00000327490.7_1_17:74266610-74266811:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.208740234375 3 385.209502 1152.60668 -0.34405 -0.00013253 -1.0931 -0.00042106 -1.4371 -0.00055359 385.2091432589131 23.104 0.20702 23.104 22.995 23.202 0 26 10 3 0 0 0 0.5029 1 11777 11777 4.5289 0.33936 1 1352500 31237 11828 20511 20919 37057 37057 0.036477630716944986 LEDFLDGILGA 11 Unmodified _LEDFLDGILGA_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6;nc|ENSG00000115423|Q9C0G6-3|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3298950195312 2 581.803154 1161.59175 0.48045 0.00027953 2.7774 0.0016159 3.2579 0.0018954 581.8046735113794 67.483 0.25256 67.001 66.889 67.142 -0.48218 15 10 2 0 0 0 0.29817 1 36857 36857 8.1555 0.8663 1 842990 31238 3124 20512 20920 37058 37058 0.017422712037159727 LEDFRDYR 8 Unmodified _LEDFRDYR_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3;nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;nc|ENSG00000077522|P35609-2|ACTN2 ENSG00000130402|ENST00000252699|ACTN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2274780273438 2 557.269813 1112.52507 0.63719 0.00035509 -1.2135 -0.00067625 -0.57631 -0.00032116 557.7704125110663 90.944 0.23703 90.45 90.4 90.637 -0.49458 17 13 2 0 0 0 8.7369 1 49758 49758 0.79363 0 1 628560 31239 4211;16049;10744;1221 20513 20921 37059 37059 -0.026689195675317023 LEDGPNFL 8 Unmodified _LEDGPNFL_ 0 0 0 ENST00000359165.5_1_12:19609181-19609565:-|nuORF ENST00000359165.5_1_12:19609181-19609565:-|nuORF ENST00000359165.5_1_12:19609181-19609565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 904.4425659179688 1 904.441074 903.433798 -0.18241 -0.00016498 0.83249 0.00075293 0.65008 0.00058795 904.441722048204 71.722 0.35638 71.722 71.505 71.861 0 33 15 3 0 0 0 0.40602 1 39982 39982 43.858 3.4097 1 2309000 31240 12140 20514 20922 37060 37060 -0.021781832648571253 LEDIVYRQL 9 Unmodified _LEDIVYRQL_ 0 0 0 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 ENSG00000185274|ENST00000333538|GALNT17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2522583007812 2 574.819138 1147.62372 NaN NaN NaN NaN NaN NaN NaN 28.456 1 28.456 27.956 28.956 0 0 0 0 0.82283 1 14699 14699 4.3292 0 1 31241 9356 20515 20923 37061 37061 0.055816836775193224 LEDNESHSF 9 Unmodified _LEDNESHSF_ 0 0 0 nc|ENSG00000050393|Q96AQ8-2|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2280883789062 2 539.22781 1076.44107 0.5187 0.00027969 0.1607 8.6654E-05 0.6794 0.00036635 539.2279339000265 38.98 0.56939 38.98 38.811 39.381 0 46 26 3 0 0 0 0.41742 1 20850 20850 11.64 0 1 20739000 31242 16028 20516 20924 37062 37062 -0.0940949545508829 LEDNESHSF 9 Unmodified _LEDNESHSF_ 0 0 0 nc|ENSG00000050393|Q96AQ8-2|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 nc|ENSG00000050393|Q96AQ8-2|MCUR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.22781 1076.44107 0.5187 0.00027969 0.1607 8.6654E-05 0.6794 0.00036635 539.2279339000265 38.98 0.56939 38.98 38.811 39.381 0 0.00043404 0.000125 NaN 11.64 46 26 3 NaN NaN NaN NaN 0 NaN NaN 0 20739000 31243 16028 20516 20924 -0.0940949545508829 LEDPFQKHL 9 Unmodified _LEDPFQKHL_ 0 0 0 ENSG00000132911|ENST00000255262|NMUR2 ENSG00000132911|ENST00000255262|NMUR2 ENSG00000132911|ENST00000255262|NMUR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7984619140625 2 563.798206 1125.58186 1.3278 0.00074864 -0.23333 -0.00013155 1.0945 0.00061708 563.7980300161507 64.775 0.33597 58.599 58.363 58.699 -6.1757 37 18 3 0 0 0 0.12424 1 41903 41903 30.637 0.79596 1 17185000 31244 4463 20517 20925 37063 37063 0.024091279889944417 LEDRWKSL 8 Unmodified _LEDRWKSL_ 0 0 0 nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-3|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF nc|ENSG00000129646|Q9H0J4|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 MSMS AL20221201_MKP_PDAC_01 4 523.7860107421875 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 51.749 1 46.015 45.515 46.515 -5.7345 0 0 0 0.45366 1 32590 32590 46.021 0.32134 1 31245 4155 20518 20926 37064 37064 0.03468858817518594 LEDSLAATQF 10 Unmodified _LEDSLAATQF_ 0 0 0 nc|ENSG00000117713|O14497-3|ARID1A;ARID1A|p.C2276Ffs*7|1|0.08|ENSG00000117713|chr1:26780721-26780722|-/TT|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A;nc|ENSG00000117713|O14497-2|ARID1A nc|ENSG00000117713|O14497-3|ARID1A nc|ENSG00000117713|O14497-3|ARID1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3111572265625 2 547.771854 1093.52915 0.50835 0.00027846 2.5515 0.0013976 3.0599 0.0016761 547.7717742464413 64.424 1.0029 63.939 63.572 64.574 -0.48512 75 46 4 0 0 0 0.22327 1 35391 35391 19.257 5.3509 1 3020900 31246 37 20519 20927 37065 37065 -0.013868748644881634 LEDSRSFRWG 10 Unmodified _LEDSRSFRWG_ 0 0 0 REV__ENSG00000163884|ENST00000296233|KLF15 REV__ENSG00000163884|ENST00000296233|KLF15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2069396972656 3 418.207155 1251.59963 NaN NaN NaN NaN NaN NaN NaN 17.136 1 17.141 16.641 17.641 0.0050564 0 0 0 0.9997 1 8630 8630 0.69767 0.42865 1 + 31247 21829 20520 20928 37066 37066 -0.016101567561236152 LEDVSRGGSPF 11 Unmodified _LEDVSRGGSPF_ 0 0 0 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 581.788330078125 2 582.288202 1162.56185 0.685 0.00039887 -1.7614 -0.0010257 -1.0764 -0.00062679 582.2882356191628 99.577 0.24727 93.401 93.243 93.49 -6.1757 24 15 2 0 0 0 0.26754 1 66291 66291 18.146 8.0724 1 25723000 31248 3753 20521 20929 37067 37067 -0.01292667741608966 LEEAKRWMEV 10 Unmodified _LEEAKRWMEV_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881225585938 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 34.689 1 34.689 34.189 35.189 0 0 0 0 0.97302 1 18294 18294 1.7423 0 1 31249 5714 20522 20930 37068 37068 0.010571113457899628 LEEALNLAME 10 Unmodified _LEEALNLAME_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7805786132812 2 566.781364 1131.54818 0.31324 0.00017754 -0.030025 -1.7018E-05 0.28321 0.00016052 566.7813881884659 85.907 0.29652 85.907 85.768 86.064 0 28 12 3 0 0 0 0.63399 1 47574 47574 9.3831 3.1773 1 759890 31250 6155;16276 20523 20931 37069 37069 -0.012336615650610838 LEEAMMRVT 9 Unmodified _LEEAMMRVT_ 0 0 0 REV__ENST00000531785.1_1_11:76092857-76106035:+|nuORF REV__ENST00000531785.1_1_11:76092857-76106035:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2657470703125 2 540.264827 1078.5151 0.23765 0.00012839 -0.45248 -0.00024446 -0.21483 -0.00011606 540.2641812756527 75.916 0.34887 75.916 75.672 76.021 0 33 15 3 0 0 0 0.41742 1 42150 42150 11.64 0.81637 1 1542700 + 31251 23088 20524 20932 37070 37070 -0.021015668887685024 LEEAQTIWDL 10 Unmodified _LEEAQTIWDL_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5409851074219 3 406.539799 1216.59757 1.276 0.00051873 1.8001 0.00073181 3.0761 0.0012505 406.54050221377975 20.633 0.34209 17.94 17.723 18.065 -2.693 34 20 2 0 0 0 0.64628 1 11045 11045 5.0475 0 1 4794300 + 31252 18213 20525 20933 37071 37071 -0.0020663028460603527 LEECGLELYF 10 Unmodified _LEECGLELYF_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2;ENST00000567161.1_1_16:69967954-69970356:+|nuORF nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.282470703125 2 608.28374 1214.55293 0.95043 0.00057813 -2.0522 -0.0012483 -1.1018 -0.00067018 608.2815918449979 89.484 0.45065 83.308 83.147 83.598 -6.1757 51 24 3 0 0 0 0.39779 1 59048 59048 21.747 0 1 11038000 31253 10084 20526 20934 37072 37072 -0.045767774223122615 LEEEEALDPL 10 Unmodified _LEEEEALDPL_ 0 0 0 ENSG00000118960|ENST00000304031|HS1BP3 ENSG00000118960|ENST00000304031|HS1BP3 ENSG00000118960|ENST00000304031|HS1BP3 MSMS AL20221201_MKP_PDAC_01 4 579.281982421875 2 579.282251 1156.54995 NaN NaN NaN NaN NaN NaN NaN 51.279 1 45.63 45.13 46.13 -5.649 0 0 0 0.51756 1 32257 32257 25.399 0 1 31254 3403 20527 20935 37073 37073 -0.022063292754637587 LEEEECEMFL 10 Unmodified _LEEEECEMFL_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C;REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ REV__ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5103149414062 3 424.510524 1270.50974 1.3754 0.00058387 -1.2754 -0.00054144 0.099962 4.2435E-05 424.51038666792505 100.41 0.19019 94.238 94.122 94.312 -6.1757 25 11 3 0 0 0 0.66569 1 67146 67146 6.1918 3.5606 1 28384000 + 31255 17296;20639 20528 20936 37074 37074 -0.11469335261904234 LEEENSRKDRQ 11 Unmodified _LEEENSRKDRQ_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE;ENST00000470731.5_1_7:2598728-2641152:+|nuORF;nc|ENSG00000106012|Q6IPM2-3|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.8512573242188 2 702.347311 1402.68007 0.12276 8.622E-05 1.7115 0.001202 1.8342 0.0012883 702.3478772772596 68.301 0.27853 68.301 68.184 68.463 0 20 12 2 0 0 0 0.73389 1 38051 38051 1.0715 0.61312 1 661870 31256 2391 20529 20937 37075 37075 -0.00516340223748557 LEEERRSAF 9 Unmodified _LEEERRSAF_ 0 0 0 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|98;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|290|2|anti-sense;chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|93 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|98 chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2904663085938 2 568.78837 1135.56219 0.59642 0.00033923 0.22595 0.00012852 0.82237 0.00046775 569.2875218325595 53.349 0.46697 53.349 53.08 53.547 0 31 20 2 0 0 0 0.5029 1 29679 29679 7.2892 0 1 4096800 31257 85 20530 20938 37076 37076 -0.00017248021754312504 LEEFHYQTK 9 Unmodified _LEEFHYQTK_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.79150390625 2 597.793121 1193.57169 0.028326 1.6933E-05 -1.6469 -0.00098452 -1.6186 -0.00096758 597.7915813067949 56.739 0.29062 56.739 56.586 56.877 0 24 12 3 0 0 0 0.0090948 1 31554 31554 85.272 25.198 1 4168800 31258 2533 20531 20939 37077 37077 -0.01735479736248635 LEEFLYLY 8 Unmodified _LEEFLYLY_ 0 0 0 ENST00000257181.9_1_1:52883535-52883676:+|nuORF ENST00000257181.9_1_1:52883535-52883676:+|nuORF ENST00000257181.9_1_1:52883535-52883676:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.281005859375 2 545.278783 1088.54301 NaN NaN NaN NaN NaN NaN NaN 95.902 1 95.902 95.402 96.402 0 0 0 0 0.97444 1 53002 53002 5.2307 0.90143 1 31259 11188 20532 20940 37078 37078 0.002284026346387691 LEEGHRQYL 9 Unmodified _LEEGHRQYL_ 0 0 0 nc|ENSG00000006015|Q96EN9-3|REX1BD nc|ENSG00000006015|Q96EN9-3|REX1BD nc|ENSG00000006015|Q96EN9-3|REX1BD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5301818847656 3 382.196367 1143.56727 NaN NaN NaN NaN NaN NaN NaN 28.458 1 28.458 27.958 28.958 0 0 0 0 0.7453 1 14700 14700 8.1555 3.2585 1 31260 16010 20533 20941 37079 37079 0.0012305584086789167 LEEGLLSVL 9 Unmodified _LEEGLLSVL_ 0 0 0 REV__ENSG00000089558|ENST00000264661|KCNH4 REV__ENSG00000089558|ENST00000264661|KCNH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.5636596679688 1 972.561189 971.553913 0.15349 0.00014928 0.12801 0.00012449 0.2815 0.00027378 972.5611199443686 94.736 0.2439 94.736 94.609 94.853 0 33 23 2 0 0 0 0.23158 1 52353 52353 20.454 4.6064 1 528130 + 31261 17842 20534 20942 37080 37080 0.0669980500889551 LEEGLWWR 8 Unmodified _LEEGLWWR_ 0 0 0 REV__ENSG00000142512|ENST00000339313|SIGLEC10;REV__ENSG00000161640|ENST00000447370|SIGLEC11;REV__nc|ENSG00000142512|Q96LC7-4|SIGLEC10 REV__ENSG00000142512|ENST00000339313|SIGLEC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.77880859375 2 544.779816 1087.54508 0.2161 0.00011772 -0.87026 -0.0004741 -0.65416 -0.00035637 544.7793275266587 96.774 1.1019 96.774 95.96 97.062 0 131 72 3 0 0 0 0.80232 2 53223 53223;53323 5.2307 0 1 3894700 + 31262 20574;21601;29670 20535 20943 37081;37082 37081 0.00480876163078392 LEEHLLCH 8 Unmodified _LEEHLLCH_ 0 0 0 nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9 nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000241119|O60656-2|UGT1A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.24365234375 2 497.244752 992.474951 0.63096 0.00031374 -2.1541 -0.0010711 -1.5232 -0.00075739 497.24329420543916 47.021 0.23086 46.684 46.544 46.775 -0.33664 22 11 3 0 0 0 0.31612 1 25186 25186 53.576 0 1 5311900 31263 10680 20536 20944 37083 37083 -0.02158745497035852 LEEHTEDED 9 Unmodified _LEEHTEDED_ 0 0 0 ENST00000577422.5_1_17:55943840-55944653:-|nuORF ENST00000577422.5_1_17:55943840-55944653:-|nuORF ENST00000577422.5_1_17:55943840-55944653:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8150634765625 3 372.815769 1115.42548 NaN NaN NaN NaN NaN NaN NaN 79.768 1 79.823 79.323 80.323 0.05497 0 0 0 0.85798 1 44079 44079 0.23584 0 1 31264 15530 20537 20945 37084 37084 -0.12761826762789497 LEEIEFDPLRF 11 Unmodified _LEEIEFDPLRF_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MSMS AL20221201_MKP_PDAC_01 4 704.3629150390625 2 704.361367 1406.70818 NaN NaN NaN NaN NaN NaN NaN 65.874 1 59.698 59.198 60.198 -6.1757 0 0 0 0.73356 1 42797 42797 15.248 2.206 1 + 31265 17994 20538 20946 37085 37085 0.021095897036047973 LEEIQQRLL 9 Unmodified _LEEIQQRLL_ 0 0 0 REV__ENST00000600898.1_1_19:35769575-35770156:+|nuORF REV__ENST00000600898.1_1_19:35769575-35770156:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3322143554688 2 571.332413 1140.65027 1.1011 0.00062908 1.2239 0.00069925 2.325 0.0013283 571.3331000765176 83.525 0.65005 77.349 77.108 77.758 -6.1757 48 33 2 0 0 0 0.095405 1 54875 54875 34.102 0 1 11176000 + 31266 18449 20539 20947 37086 37086 0.08557372568861865 LEEIQQRLL 9 Unmodified _LEEIQQRLL_ 0 0 0 REV__ENST00000600898.1_1_19:35769575-35770156:+|nuORF REV__ENST00000600898.1_1_19:35769575-35770156:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.2433471679688 2 571.332413 1140.65027 1.1011 0.00062908 1.2239 0.00069925 2.325 0.0013283 571.3331000765176 83.525 0.65005 77.349 77.108 77.758 -6.1757 48 33 2 0 0 0 0.05527 1 55049 55049 34.102 0 1 11176000 + 31267 18449 20539 20947 37087 37087 0.08557372568861865 LEEKDKRW 8 Unmodified _LEEKDKRW_ 0 0 0 REV__ENST00000406134.5_1_2:47702259-47702307:+|nuORF REV__ENST00000406134.5_1_2:47702259-47702307:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2595825195312 2 552.29583 1102.57711 0.56292 0.0003109 -2.1041 -0.0011621 -1.5412 -0.0008512 552.2945634382326 38.229 0.2039 38.229 38.148 38.352 0 20 17 2 0 0 0 8.7369 1 20404 20404 11.64 2.2929 1 8573100 + 31268 26652 20540 20948 37088 37088 0.029922438462335776 LEEKHKLHERI 11 Unmodified _LEEKHKLHERI_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83;nc|ENSG00000173588|Q9Y592-2|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.7078247070312 4 358.707126 1430.7994 1.8816 0.00067493 -0.74545 -0.0002674 1.1361 0.00040754 358.70689854454383 21.428 0.49101 18.693 18.485 18.976 -2.7348 151 40 5 0 0 0 0.69838 1 11420 11420 4.4062 0 1 79332000 31269 8344 20541 20949 37089 37089 0.10122898191616514 LEEKHKLHERI 11 Unmodified _LEEKHKLHERI_ 0 0 0 ENSG00000173588|ENST00000397809|CEP83;nc|ENSG00000173588|Q9Y592-2|CEP83 ENSG00000173588|ENST00000397809|CEP83 ENSG00000173588|ENST00000397809|CEP83 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.9410705566406 3 477.940409 1430.7994 1.2634 0.00060385 -0.73993 -0.00035364 0.52351 0.0002502 477.9399741325379 21.425 0.33585 18.69 18.564 18.9 -2.7348 96 31 4 0 0 0 0.70147 1 11533 11533 4.1166 0 1 18419000 31270 8344 20541 20949 37090 37090 0.10122898191616514 LEEKKRKRKKR 11 Unmodified _LEEKKRKRKKR_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS AL20221201_MKP_PDAC_01 4 500.3264770507812 3 500.326597 1497.95796 NaN NaN NaN NaN NaN NaN NaN 107.4 1 101.23 100.73 101.73 -6.1757 0 0 0 0.9434 1 71838 71838 0.073264 0.073264 1 31271 894 20542 20950 37091 37091 0.2289023689052101 LEEKKRKRKKR 11 Unmodified _LEEKKRKRKKR_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS AL20221201_MKP_PDAC_01 4 500.3275756835938 3 500.326597 1497.95796 NaN NaN NaN NaN NaN NaN NaN 107.6 1 101.42 100.92 101.92 -6.1757 0 0 0 0.9434 1 71957 71957 0.073264 0.073264 1 31272 894 20542 20950 37092 37092 0.2289023689052101 LEEKKRKRKKR 11 Unmodified _LEEKKRKRKKR_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS AL20221201_MKP_PDAC_01 4 500.32666015625 3 500.326597 1497.95796 NaN NaN NaN NaN NaN NaN NaN 107.78 1 101.6 101.1 102.1 -6.1757 0 0 0 0.94293 1 72065 72065 0.40827 0 1 31273 894 20542 20950 37093 37093 0.2289023689052101 LEEKRRKM 8 Unmodified _LEEKRRKM_ 0 0 0 REV__ENSG00000065613|ENST00000369755|SLK REV__ENSG00000065613|ENST00000369755|SLK MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8786315917969 3 363.878092 1088.61245 1.0842 0.00039452 -0.75379 -0.00027429 0.33041 0.00012023 363.8779043713759 27.666 0.24445 24.629 24.541 24.785 -3.0365 21 12 2 0 0 0 0.68937 1 15355 15355 18.146 0 1 10268000 + 31274 17383 20543 20951 37094 37094 0.07168583102406956 LEEKTKGVP 9 Unmodified _LEEKTKGVP_ 0 0 0 REV__ENST00000469132.1_1_6:32947934-32948492:+|nuORF REV__ENST00000469132.1_1_6:32947934-32948492:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.3140563964844 2 500.787307 999.560061 1.0135 0.00050757 0.13249 6.6349E-05 1.146 0.00057392 500.7871662860971 99.191 0.18966 93.015 92.923 93.113 -6.1757 23 10 3 0 0 0 0.19496 1 65986 65986 13.906 3.7227 1 87026000 + 31275 24150 20544 20952 37095 37095 0.06026323240428155 LEEKVFPTL 9 Unmodified _LEEKVFPTL_ 0 0 0 REV__nc|ENSG00000162772|P18847-2|ATF3 REV__nc|ENSG00000162772|P18847-2|ATF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.3051147460938 2 538.305332 1074.59611 0.27159 0.0001462 0.024201 1.3028E-05 0.29579 0.00015923 538.3053473601925 69.573 0.24791 69.573 69.444 69.692 0 23 11 3 0 0 0 0.34999 1 38736 38736 14.838 0.93222 1 719590 + 31276 21690 20545 20953 37096 37096 0.06179780417301117 LEELPEVYP 9 Unmodified _LEELPEVYP_ 0 0 0 ENSG00000100219|ENST00000344347|XBP1 ENSG00000100219|ENST00000344347|XBP1 ENSG00000100219|ENST00000344347|XBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7794799804688 2 544.779148 1087.54374 0.2161 0.00011772 0.35722 0.0001946 0.57331 0.00031233 544.7793275266587 96.774 1.1019 96.774 95.96 97.062 0 131 72 3 0 0 0 0.2001 1 53422 53422 23.148 6.2061 1 3894700 31277 1770 20546 20954 37097 37097 0.003471972836450732 LEELQEAFNKI 11 Unmodified _LEELQEAFNKI_ 0 0 0 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 ENSG00000120756|ENST00000457734|PLS1 MSMS AL20221201_MKP_PDAC_01 4 445.2391357421875 3 445.23812 1332.69253 NaN NaN NaN NaN NaN NaN NaN 97.599 1 91.423 90.923 91.923 -6.1757 0 0 0 0.69464 1 64678 64678 9.7643 2.7272 1 31278 3539 20547 20955 37098 37098 0.039493031865504236 LEELQLARQ 9 Unmodified _LEELQLARQ_ 0 0 0 REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2083740234375 3 367.208384 1098.60332 0.086027 3.159E-05 1.0266 0.00037698 1.1126 0.00040857 367.208724458604 21.702 0.24829 21.715 21.609 21.857 0.013796 34 16 3 0 0 0 0.46162 1 11102 11102 9.544 9.544 1 3365300 + 31279 28177 20548 20956 37099 37099 0.05796513017708094 LEELQLARQ 9 Unmodified _LEELQLARQ_ 0 0 0 REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF REV__ENST00000513194.1_1_Y:21636782-21643633:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 367.208384 1098.60332 0.086027 3.159E-05 1.0266 0.00037698 1.1126 0.00040857 367.208724458604 21.702 0.24829 21.715 21.609 21.857 0.013796 0.1691 0.00031245 NaN 9.544 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3365300 + 31280 28177 20548 20956 0.05796513017708094 LEEMPQSFS 9 Unmodified _LEEMPQSFS_ 0 0 0 ENST00000471727.3_1_2:68758519-68795411:+|nuORF ENST00000471727.3_1_2:68758519-68795411:+|nuORF ENST00000471727.3_1_2:68758519-68795411:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.276611328125 2 534.239332 1066.46411 0.92548 0.00049443 -0.53469 -0.00028565 0.39079 0.00020877 534.2389713132342 54.309 0.33199 54.309 54.152 54.484 0 38 14 4 0 0 0 0.209 1 30183 30183 7.2892 0.56607 1 4305000 31281 13884 20549 20957 37100 37100 -0.06646192661969508 LEENERRLI 9 Unmodified _LEENERRLI_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.32177734375 2 586.325119 1170.63569 1.9914 0.0011676 -2.6986 -0.0015823 -0.7072 -0.00041465 586.3232918565468 93.043 0.49931 93.066 92.771 93.27 0.022987 41 19 3 0 0 0 0.49272 1 51822 51822 7.9102 0 1 5129600 + 31282 17428 20550 20958 37101 37101 0.057193004207192644 LEENEWHVL 9 Unmodified _LEENEWHVL_ 0 0 0 REV__ENSG00000155906|ENST00000444024|RMND1 REV__ENSG00000155906|ENST00000444024|RMND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7845458984375 2 584.785296 1167.55604 0.039015 2.2815E-05 -0.57823 -0.00033814 -0.53922 -0.00031533 584.7847554347117 64.922 0.37997 64.922 64.672 65.052 0 36 17 3 0 0 0 0.5029 1 36254 36254 7.2892 7.2892 1 5019600 + 31283 21299 20551 20959 37102 37102 -0.021037662532762624 LEEPECDEF 9 Unmodified _LEEPECDEF_ 0 0 0 REV__ENSG00000178177|ENST00000635767|LCORL;REV__nc|ENSG00000178177|Q8N3X6|LCORL REV__ENSG00000178177|ENST00000635767|LCORL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2689819335938 2 555.71843 1109.42231 0.55697 0.00030952 4.1785 0.002322 4.7354 0.0026316 556.223280868147 69.259 0.060127 69.259 69.226 69.286 0 4 2 2 0 0 0 0.19891 1 38581 38581 11.64 2.2572 1 436530 + 31284 23025;29812 20552 20960 37103 37103 -0.12802793141167967 LEEPLYCL 8 Unmodified _LEEPLYCL_ 0 0 0 REV__nc|ENSG00000177731|Q13045-2|FLII REV__nc|ENSG00000177731|Q13045-2|FLII MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.190673828125 2 490.243886 978.47322 -0.070874 -3.4746E-05 -2.653 -0.0013006 -2.7239 -0.0013354 490.2424148509863 55.173 0.16429 55.173 55.029 55.193 0 9 6 2 0 0 0 8.7369 1 30604 30604 5.7604 0.52976 1 1054600 + 31285 23002 20553 20961 37104 37104 -0.01687799305648241 LEEPVEYIGF 10 Unmodified _LEEPVEYIGF_ 0 0 0 REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2015075683594 3 399.200895 1194.58086 1.2001 0.00047906 1.2264 0.00048959 2.4265 0.00096865 399.20121654999434 21.779 0.40953 19.044 18.827 19.237 -2.7348 59 22 3 0 0 0 0.33553 2 11631 11631;11739 16.566 3.6933 1 17148000 + 31286 30124 20554 20962 37105;37106 37105 -0.008651311705762055 LEEPVEYIGF 10 Unmodified _LEEPVEYIGF_ 0 0 0 REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 399.200895 1194.58086 -0.52973 -0.00021147 1.8054 0.00072073 1.2757 0.00050926 399.5360776144852 19.368 0.13426 19.368 19.282 19.417 0 0.1621 0.00059361 NaN 16.566 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 848480 + 31287 30124 20554 20962 -0.008651311705762055 LEEQLNDLII 10 Unmodified _LEEQLNDLII_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 401.0322875976562 3 400.555449 1198.64452 1.0091 0.00040419 -0.7625 -0.00030542 0.24657 9.8764E-05 400.5545255467405 19.111 0.15047 16.472 16.39 16.541 -2.6387 11 9 2 0 0 0 0.23356 1 10094 10094 11.518 0 1 1154600 + 31288 17283 20555 20963 37107 37107 0.05314229266514303 LEEQLNDLII 10 Unmodified _LEEQLNDLII_ 0 0 0 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 REV__nc|ENSG00000054654|Q8WXH0|SYNE2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 400.555449 1198.64452 -0.65464 -0.00026222 -1.7829 -0.00071415 -2.4375 -0.00097637 400.55469767658764 16.002 0.07315 16.002 15.974 16.047 0 -0.22613 -0.00049583 NaN 11.518 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 345770 + 31289 17283 20555 20963 0.05314229266514303 LEEQQGRQF 9 Unmodified _LEEQQGRQF_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2734375 2 567.780544 1133.54654 0.71238 0.00040447 1.0965 0.00062258 1.8089 0.0010271 567.7809530444757 52.368 0.40723 51.934 51.789 52.197 -0.43367 50 20 4 0 0 0 0.17718 1 28359 28359 20.454 0 1 17845000 31290 4940 20556 20964 37108 37108 -0.01489534538791304 LEEQVLQKA 9 Unmodified _LEEQVLQKA_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2999267578125 2 529.298039 1056.58152 NaN NaN NaN NaN NaN NaN NaN 77.648 1 77.648 77.148 78.148 0 0 0 0 0.43483 1 43167 43167 18.146 1.0335 1 + 31291 24052 20557 20965 37109 37109 0.055497082691545074 LEERAMRQF 9 Unmodified _LEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.869384765625 3 393.869485 1178.58663 1.0097 0.00039768 -0.7459 -0.00029379 0.26377 0.00010389 393.8692851769247 31.952 0.23789 28.257 28.156 28.394 -3.6958 14 12 2 0 0 0 0.05447 1 18159 18159 40.239 14.118 1 6363000 31292 3013 20558 20966 37110 37110 0.004476888600947859 LEERAMRQF 9 Oxidation (M) _LEERAM(Oxidation (M))RQF_ LEERAM(1)RQF LEERAM(93)RQF 0 0 1 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MSMS AL20221201_MKP_PDAC_01 4 598.2975463867188 2 598.298047 1194.58154 NaN NaN NaN NaN NaN NaN NaN 26.198 1 23.247 22.747 23.747 -2.9511 0 0 0 0.0098005 1 14413 14413 93.166 44.82 1 31293 3013 20558 20967 37111 37111 519 -0.007966150025367824 LEERNTEMT 9 Unmodified _LEERNTEMT_ 0 0 0 REV__ENSG00000165186|ENST00000379361|PTCHD1 REV__ENSG00000165186|ENST00000379361|PTCHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.2831420898438 2 561.75842 1121.50229 0.94311 0.0005298 -0.074644 -4.1932E-05 0.86846 0.00048787 561.7581276487434 57.006 0.42098 51.029 50.811 51.232 -5.9769 41 25 2 0 0 0 0.20727 1 36277 36277 7.9102 0 1 27802000 + 31294 21990 20559 20968 37112 37112 -0.05360306747297727 LEERTLQTV 9 Unmodified _LEERTLQTV_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2034912109375 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 38.221 1 38.221 37.721 38.721 0 0 0 0 0.18351 1 20399 20399 32.786 1.5173 1 + 31295 21753 20560 20969 37113 37113 0.04704806780796389 LEESNEDDY 9 Unmodified _LEESNEDDY_ 0 0 0 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.8114929199219 3 371.812136 1112.41458 0.056583 2.1038E-05 -1.6866 -0.00062711 -1.6301 -0.00060607 371.81145591331943 63.045 0.30071 63.045 62.846 63.146 0 31 12 3 0 0 0 0.55144 1 35196 35196 2.4985 0 1 2315800 31296 5115 20561 20970 37114 37114 -0.13713229137078997 LEETEMYSS 9 Unmodified _LEETEMYSS_ 0 0 0 REV__nc|ENSG00000172264|A1Z1Q3|MACROD2 REV__nc|ENSG00000172264|A1Z1Q3|MACROD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3060302734375 2 544.726255 1087.43796 0.86036 0.00046866 1.8453 0.0010052 2.7056 0.0014738 544.7272914442286 54.673 0.30564 54.673 54.484 54.79 0 20 12 2 0 0 0 0.19891 1 30394 30394 11.64 2.2929 1 1445000 + 31297 22637 20562 20971 37115 37115 -0.10226506624098874 LEEVTPPPGDL 11 Unmodified _LEEVTPPPGDL_ 0 0 0 REV__ENSG00000185215|ENST00000560869|TNFAIP2 REV__ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5365295410156 3 389.536166 1165.58667 1.3143 0.00051198 0.59756 0.00023277 1.9119 0.00074475 389.53640772393373 34.864 0.32198 30.769 30.632 30.954 -4.0951 31 18 2 0 0 0 0.65108 1 20216 20216 4.4062 0 1 7403200 + 31298 23482 20563 20972 37116 37116 0.010499673411231925 LEEWFFEF 8 Unmodified _LEEWFFEF_ 0 0 0 ENSG00000156973|ENST00000287600|PDE6D ENSG00000156973|ENST00000287600|PDE6D ENSG00000156973|ENST00000287600|PDE6D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.287353515625 2 573.760758 1145.50696 0.58235 0.00033413 0.97283 0.00055817 1.5552 0.0008923 573.7614591906153 66.9 0.22356 66.9 66.747 66.971 0 14 10 2 0 0 0 8.7369 1 37305 37305 5.7604 1.0044 1 823490 31299 6492 20564 20973 37117 37117 -0.05997054542240221 LEEWMMMI 8 Unmodified _LEEWMMMI_ 0 0 0 ENST00000545737.5_1_12:28410092-28458713:+|nuORF;ENST00000539107.5_2_12:28343406-28458716:+|nuORF ENST00000545737.5_1_12:28410092-28458713:+|nuORF ENST00000545737.5_1_12:28410092-28458713:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7411499023438 2 541.739599 1081.46465 0.13181 7.1407E-05 -2.4896 -0.0013487 -2.3578 -0.0012773 541.7396397666816 65.434 0.28078 65.434 65.247 65.528 0 16 10 2 0 0 0 0.78849 1 36478 36478 9.3474 0.75416 1 1054000 31300 15016 20565 20974 37118 37118 -0.07282812538119288 LEEYISKEDA 10 Unmodified _LEEYISKEDA_ 0 0 0 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;ENST00000537766.1_1_11:61520189-61533185:+|nuORF;MYRF|p.P178Tfs*50|1|0.05|ENSG00000124920|chr11:61770316-61770317|-/A|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.2887573242188 2 598.787701 1195.56085 0.31175 0.00018667 0.84408 0.00050543 1.1558 0.0006921 599.2895357551022 75.066 0.80444 68.891 68.534 69.338 -6.1757 110 43 3 0 0 0 0.23162 1 48857 48857 12.241 5.5175 1 13630000 31301 3825 20566 20975 37119 37119 -0.029109269011769356 LEFAGGGK 8 Unmodified _LEFAGGGK_ 0 0 0 ENST00000498623.6_1_3:9834217-9834265:+|nuORF ENST00000498623.6_1_3:9834217-9834265:+|nuORF ENST00000498623.6_1_3:9834217-9834265:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.7084350585938 2 389.708328 777.402104 NaN NaN NaN NaN NaN NaN NaN 38.096 1 38.096 37.596 38.596 0 0 0 0 0.97444 1 20321 20321 4.756 1.8668 1 31302 14426 20567 20976 37120 37120 0.004498687718751171 LEFAVQMTCQ 10 Unmodified _LEFAVQMTCQ_ 0 0 0 ENSG00000173992|ENST00000533244|CCS;ENST00000530384.5_1_11:66360639-66366729:+|nuORF ENSG00000173992|ENST00000533244|CCS ENSG00000173992|ENST00000533244|CCS MSMS AL20221201_MKP_PDAC_01 4 390.517333984375 3 390.515832 1168.52567 NaN NaN NaN NaN NaN NaN NaN 21.418 1 18.683 18.183 19.183 -2.7348 0 0 0 0.94985 1 11468 11468 5.7834 3.3486 1 31303 8382 20568 20977 37121 37121 -0.0518558423432296 LEFEEDDDPL 10 Unmodified _LEFEEDDDPL_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.2619018554688 2 611.261516 1220.50848 0.17079 0.00010439 0.14021 8.5703E-05 0.31099 0.0001901 611.2615846606695 91.388 0.29966 91.388 91.271 91.571 0 31 18 3 0 0 0 0.71042 1 50527 50527 1.4819 0.28856 1 691820 + 31304 22776 20569 20978 37122 37122 -0.09295510034803556 LEFEEDDDPL 10 Unmodified _LEFEEDDDPL_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 611.261516 1220.50848 0.17079 0.00010439 0.14021 8.5703E-05 0.31099 0.0001901 611.2615846606695 91.388 0.29966 91.388 91.271 91.571 0 0 0 NaN 1.4819 31 18 3 NaN NaN NaN NaN 0 NaN NaN 0 691820 + 31305 22776 20569 20978 -0.09295510034803556 LEFEPRAFFT 10 Unmodified _LEFEPRAFFT_ 0 0 0 ENST00000371417.3_1_9:140510343-140510466:-|nuORF ENST00000371417.3_1_9:140510343-140510466:-|nuORF ENST00000371417.3_1_9:140510343-140510466:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5482788085938 3 419.548518 1255.62372 -0.48724 -0.00020442 -1.9867 -0.00083351 -2.4739 -0.0010379 419.5487924730652 25.128 0.22478 25.128 25.036 25.26 0 27 11 3 0 0 0 0.67413 1 12891 12891 5.7834 0 1 628220 31306 12357 20570 20979 37123 37123 0.006136836775112897 LEFEYCSL 8 Unmodified _LEFEYCSL_ 0 0 0 ENST00000342494.7_1_12:109915806-109915905:+|nuORF ENST00000342494.7_1_12:109915806-109915905:+|nuORF ENST00000342494.7_1_12:109915806-109915905:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2252807617188 2 502.225694 1002.43683 NaN NaN NaN NaN NaN NaN NaN 52.067 1 52.067 51.567 52.567 0 0 0 0 0.93066 1 28799 28799 14.582 1.0738 1 31307 11984 20571 20980 37124 37124 -0.06428676202347106 LEFFWVFF 8 Unmodified _LEFFWVFF_ 0 0 0 ENST00000487066.5_1_17:16344775-16344985:+|nuORF ENST00000487066.5_1_17:16344775-16344985:+|nuORF ENST00000487066.5_1_17:16344775-16344985:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2955932617188 2 567.786579 1133.5586 -0.034978 -1.986E-05 -3.0557 -0.001735 -3.0907 -0.0017549 567.7851931255477 51.927 0.19659 51.927 51.864 52.06 0 12 8 2 0 0 0 8.7369 1 28684 28684 10.183 0 1 3383000 31308 14193 20572 20981 37125 37125 -0.0028326605768143054 LEFGHKICW 9 Unmodified _LEFGHKICW_ 0 0 0 REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.787841796875 2 566.784044 1131.55354 0.31158 0.0001766 3.7378 0.0021185 4.0494 0.0022951 566.786030315334 78.005 0.31116 78.005 77.816 78.127 0 19 13 2 0 0 0 0.45045 1 43337 43337 10.074 0.72649 1 592800 + 31309 18318 20573 20982 37126 37126 -0.00697893191932053 LEFGHKICW 9 Unmodified _LEFGHKICW_ 0 0 0 REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7882080078125 2 566.784044 1131.55354 -0.12631 -7.159E-05 3.8949 0.0022076 3.7686 0.002136 566.7865794447023 78.374 0.48668 77.888 77.778 78.265 -0.48596 29 21 2 0 0 0 0.38785 1 42968 42968 13.042 0 1 2308100 + 31310 18318 20573 20982 37127 37127 -0.00697893191932053 LEFHQSVFD 9 Unmodified _LEFHQSVFD_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2689819335938 2 561.266739 1120.51892 1.8814 0.001056 0.11932 6.6968E-05 2.0007 0.0011229 561.267111318342 50.229 0.22353 50.18 50.006 50.23 -0.048824 16 10 2 0 0 0 0.38785 1 27153 27153 13.042 0.51092 1 1465200 31311 9713 20574 20983 37128 37128 -0.03651437799021551 LEFHQSVFD 9 Unmodified _LEFHQSVFD_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.261962890625 2 561.266739 1120.51892 0.75584 0.00042423 -4.1821 -0.0023473 -3.4263 -0.0019231 561.2640887568671 50.986 0.26235 50.932 50.784 51.047 -0.053871 29 12 3 0 0 0 0.20428 1 27564 27564 22.736 3.4793 1 12243000 31312 9713 20574 20983 37129 37129 -0.03651437799021551 LEFLEEQSL 9 Unmodified _LEFLEEQSL_ 0 0 0 ENST00000514352.5_1_4:91234111-91389506:+|nuORF;ENST00000508086.1_1_4:91234186-91389506:+|nuORF;nc|ENSG00000184305|Q9C0I3-2|CCSER1;ENSG00000184305|ENST00000509176|CCSER1 ENST00000514352.5_1_4:91234111-91389506:+|nuORF;nc|ENSG00000184305|Q9C0I3-2|CCSER1 ENST00000514352.5_1_4:91234111-91389506:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2815551757812 2 554.282054 1106.54956 0.43797 0.00024276 -0.37097 -0.00020562 0.067002 3.7138E-05 554.2818874343039 69.756 0.33577 69.756 69.598 69.934 0 44 15 4 0 0 0 0.59218 1 38787 38787 1.8442 0 1 5678500 31313 14652;9243 20575 20984 37130 37130 0.0005429579534848017 LEFPHGPG 8 Unmodified _LEFPHGPG_ 0 0 0 REV__ENST00000534054.1_1_11:67396903-67397161:-|nuORF REV__ENST00000534054.1_1_11:67396903-67397161:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2145080566406 2 427.213778 852.413003 NaN NaN NaN NaN NaN NaN NaN 15.321 1 15.307 14.807 15.807 -0.014067 0 0 0 0.97444 1 7513 7513 0.69038 0 1 + 31314 28491 20576 20985 37131 37131 -0.019107288538407374 LEFYEEIFSL 10 Unmodified _LEFYEEIFSL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.3203125 2 645.318637 1288.62272 -0.03048 -1.967E-05 -0.3522 -0.00022728 -0.38268 -0.00024695 645.3188461902797 85.994 0.18459 85.994 85.913 86.098 0 10 8 2 0 0 0 0.72247 1 47658 47658 0.40072 0 1 330250 31315 10362 20577 20986 37132 37132 -0.010045754820339425 LEFYLHIHF 9 Unmodified _LEFYLHIHF_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENST00000482392.1_1_2:232070951-232079819:+|nuORF ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8821105957031 3 406.88172 1217.62333 0.50317 0.00020473 0.24819 0.00010098 0.75135 0.00030571 406.88171210534927 57.22 0.29946 56.73 56.558 56.858 -0.48974 22 13 2 0 0 0 0.58466 1 31116 31116 1.1933 0 1 3109600 31316 4763 20578 20987 37133 37133 0.02322308748330215 LEGAPRLGYLY 11 Unmodified _LEGAPRLGYLY_ 0 0 0 nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL MSMS AL20221201_MKP_PDAC_01 4 417.8971557617188 3 417.895917 1250.66592 NaN NaN NaN NaN NaN NaN NaN 21.876 1 19.141 18.641 19.641 -2.7348 0 0 0 0.9385 1 11743 11743 1.4551 0.12547 1 31317 1815 20579 20988 37134 37134 0.05061659085913561 LEGASILGGL 10 Unmodified _LEGASILGGL_ 0 0 0 ENST00000374647.9_1_9:111693343-111696326:-|nuORF ENST00000374647.9_1_9:111693343-111696326:-|nuORF ENST00000374647.9_1_9:111693343-111696326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.5308227539062 1 929.530224 928.522947 0.405 0.00037646 0.093523 8.6932E-05 0.49852 0.00046339 929.5305344628875 75.592 0.29318 75.592 75.453 75.746 0 20 11 2 0 0 0 0.72607 1 42016 42016 0 0 1 869470 31318 12451 20580 20989 37135 37135 0.05582651694692231 LEGDTFLLL 9 Unmodified _LEGDTFLLL_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;ENST00000519409.1_1_8:101252858-101271281:+|nuORF ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.263671875 2 510.784233 1019.55391 0.41707 0.00021303 0.75803 0.00038719 1.1751 0.00060022 510.7846822934726 82.516 0.73894 82.02 81.443 82.182 -0.4952 44 29 2 0 0 0 0.16785 1 45219 45219 23.148 0 1 497630 31319 2210 20581 20990 37136 37136 0.04491805008922256 LEGEDEETL 9 Unmodified _LEGEDEETL_ 0 0 0 REV__nc|ENSG00000124587|Q13608-2|PEX6 REV__nc|ENSG00000124587|Q13608-2|PEX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7288818359375 2 517.729852 1033.44515 NaN NaN NaN NaN NaN NaN NaN 75.429 1 75.429 74.929 75.929 0 0 0 0 0.82739 1 41958 41958 4.3292 0 1 + 31320 19457 20582 20991 37137 37137 -0.07023450752035387 LEGEESRMSGE 11 Unmodified _LEGEESRMSGE_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.264404296875 2 612.264067 1222.51358 -0.47347 -0.00028989 0.53549 0.00032786 0.062026 3.7976E-05 612.2644275494174 18.817 0.16954 18.84 18.757 18.926 0.023106 46 21 3 0 0 0 0.29175 1 9437 9437 27.223 10.11 1 1097900 + 31321 7667 20583 20992 37138 37138 -0.08877529443816456 LEGFRQVLLF 10 Unmodified _LEGFRQVLLF_ 0 0 0 REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.904541015625 3 407.904524 1220.69174 0.22539 9.1937E-05 0.22469 9.1653E-05 0.45008 0.00018359 407.90458878999897 85.105 0.65421 78.929 78.483 79.138 -6.1757 46 39 2 0 0 0 0.46514 1 56134 56134 15.739 1.5205 1 34056000 + 31322 22352 20584 20993 37139 37139 0.09022553328168215 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.7474365234375 2 400.747453 799.480354 -0.49627 -0.00019888 0.16084 6.4458E-05 -0.33543 -0.00013442 400.74760704968895 44.857 0.32695 44.857 44.769 45.095 0 23 16 2 0 0 0 0.17097 1 24424 24424 81.613 14.269 1 17834000 + 31323 27100 20585 20994 37140 37140 0.07259301357100867 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.48486328125 1 800.48763 799.480354 -0.070928 -5.6777E-05 -1.1007 -0.0008811 -1.1716 -0.00093788 800.4865565350707 62.377 0.31475 62.377 62.274 62.589 0 30 21 2 0 0 0 0.14054 2 34767 34767;34875 88.904 24.667 1 5794500 + 31324 27100 20585 20994 37141;37142 37141 0.07259301357100867 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4857177734375 1 800.48763 799.480354 0.15363 0.00012298 -0.54073 -0.00043285 -0.38711 -0.00030988 800.4867971465954 62.799 0.16103 62.313 62.244 62.405 -0.48617 11 7 2 0 0 0 0.14054 1 34261 34261 88.904 21.56 1 2853600 + 31325 27100 20585 20994 37143 37143 0.07259301357100867 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.7477722167969 2 400.747453 799.480354 NaN NaN NaN NaN NaN NaN NaN 45.032 1 44.708 44.208 45.208 -0.32425 0 0 0 0.29029 1 24038 24038 64.236 28.192 1 + 31326 27100 20585 20994 37144 37144 0.07259301357100867 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 800.48763 799.480354 -0.070928 -5.6777E-05 -1.1007 -0.0008811 -1.1716 -0.00093788 800.4865565350707 62.377 0.31475 62.377 62.274 62.589 0 0.032329 -6.0402E-05 NaN 88.904 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 5794500 + 31327 27100 20585 20994 0.07259301357100867 LEGGALLK 8 Unmodified _LEGGALLK_ 0 0 0 REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 800.48763 799.480354 0.15363 0.00012298 -0.54073 -0.00043285 -0.38711 -0.00030988 800.4867971465954 62.799 0.16103 62.313 62.244 62.405 -0.48617 -0.032329 0.00038785 NaN 88.904 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2853600 + 31328 27100 20585 20994 0.07259301357100867 LEGKRFLEL 9 Unmodified _LEGKRFLEL_ 0 0 0 ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1;ENST00000473217.5_1_17:27901722-27902547:-|nuORF ENSG00000108262|ENST00000225394|GIT1 ENSG00000108262|ENST00000225394|GIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8247680664062 2 552.824224 1103.63389 0.56097 0.00031012 -0.017866 -9.8768E-06 0.5431 0.00030024 552.8241273023738 55.394 0.35852 54.916 54.733 55.091 -0.47798 52 16 4 0 0 0 0.036857 1 30001 30001 51.63 2.0755 1 36778000 31329 2555 20586 20995 37145 37145 0.08622291402753035 LEGLEGCTL 9 Unmodified _LEGLEGCTL_ 0 0 0 REV__ENST00000428457.1_1_7:47316856-47317057:-|nuORF REV__ENST00000428457.1_1_7:47316856-47317057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7310485839844 2 467.731143 933.447733 0.49361 0.00023088 -0.49274 -0.00023047 0.00087658 4.1E-07 467.73092915993504 63.325 0.47054 63.325 63.096 63.567 0 40 23 2 0 0 0 0.43463 1 35268 35268 10.824 0 1 10210000 + 31330 26940 20587 20996 37146 37146 -0.0216527382805225 LEGLFTETGF 10 Unmodified _LEGLFTETGF_ 0 0 0 REV__ENST00000258439.7_1_2:96919100-96919328:-|nuORF REV__ENST00000258439.7_1_2:96919100-96919328:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7794189453125 2 557.276772 1112.53899 0.45839 0.00025545 0.39223 0.00021858 0.85062 0.00047403 557.2766316057824 99.74 0.21617 93.565 93.448 93.664 -6.1757 36 14 4 0 0 0 0.44373 1 66484 66484 19.257 4.4187 1 53981000 + 31331 24943 20588 20997 37147 37147 -0.01277686859066307 LEGLGLLDV 9 Unmodified _LEGLGLLDV_ 0 0 0 ENST00000467496.5_1_X:129474252-129484631:+|nuORF ENST00000467496.5_1_X:129474252-129484631:+|nuORF ENST00000467496.5_1_X:129474252-129484631:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5362548828125 1 928.534975 927.527698 0.39392 0.00036576 1.1409 0.0010594 1.5349 0.0014252 928.5357803087375 88.742 0.25872 88.238 88.112 88.371 -0.50423 19 10 2 0 0 0 0.34999 1 48595 48595 14.838 3.198 1 939050 31332 13780 20589 20998 37148 37148 0.06103535837428353 LEGLLLGGG 9 Unmodified _LEGLLLGGG_ 0 0 0 ENSG00000162571|ENST00000379289|TTLL10;nc|ENSG00000162571|Q6ZVT0-3|TTLL10;nc|ENSG00000162571|Q6ZVT0-2|TTLL10 ENSG00000162571|ENST00000379289|TTLL10 ENSG00000162571|ENST00000379289|TTLL10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2194213867188 2 414.744911 827.475269 0.22768 9.4429E-05 2.7571 0.0011435 2.9848 0.0012379 414.74606203238375 54.927 0.21497 54.858 54.724 54.939 -0.068737 16 10 2 0 0 0 0.2191 1 29850 29850 0 0 1 1935200 31333 6873 20590 20999 37149 37149 0.054629974944987225 LEGLSLLSGF 10 Unmodified _LEGLSLLSGF_ 0 0 0 ENST00000562846.1_1_16:67595834-67596182:-|nuORF ENST00000562846.1_1_16:67595834-67596182:-|nuORF ENST00000562846.1_1_16:67595834-67596182:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2924194335938 2 518.289682 1034.56481 0.22802 0.00011818 0.66183 0.00034302 0.88985 0.0004612 518.2899433891872 65.285 0.61504 65.285 65.033 65.648 0 85 24 5 0 0 0 0.69064 1 36591 36591 3.9444 0 1 88860000 31334 15346 20591 21000 37150 37150 0.048912073832070746 LEGMIRKRS 9 Unmodified _LEGMIRKRS_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.8955383300781 3 363.878092 1088.61245 1.7748 0.00064581 -0.44598 -0.00016228 1.3288 0.00048353 363.87778666648035 21.732 0.22302 18.997 18.935 19.158 -2.7348 19 11 2 0 0 0 0.20358 1 11698 11698 10.151 5.6217 1 3502700 31335 4122 20592 21001 37151 37151 0.07168583102384218 LEGPLISLF 9 Unmodified _LEGPLISLF_ 0 0 0 REV__ENSG00000185219|ENST00000396077|ZNF445;REV__ENSG00000196345|ENST00000426540|ZKSCAN7 REV__ENSG00000196345|ENST00000426540|ZKSCAN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 988.5709838867188 1 988.57136 987.564084 0.47469 0.00046926 -0.26975 -0.00026666 0.20494 0.0002026 988.5710640461928 100.6 0.14327 94.425 94.345 94.488 -6.1757 23 9 3 0 0 0 0.0067112 1 67284 67284 112.59 0 1 171860000 + 31336 23483;23819 20593 21002 37152 37152 0.06980412734151287 LEGPLISLF 9 Unmodified _LEGPLISLF_ 0 0 0 REV__ENSG00000185219|ENST00000396077|ZNF445;REV__ENSG00000196345|ENST00000426540|ZKSCAN7 REV__ENSG00000196345|ENST00000426540|ZKSCAN7 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 988.57136 987.564084 0.47469 0.00046926 -0.26975 -0.00026666 0.20494 0.0002026 988.5710640461928 100.6 0.14327 94.425 94.345 94.488 -6.1757 -0.15843 -0.00017092 NaN 112.59 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 171860000 + 31337 23483;23819 20593 21002 0.06980412734151287 LEGPSRGLDKL 11 Unmodified _LEGPSRGLDKL_ 0 0 0 REV__CON__Q2KIH2 REV__CON__Q2KIH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5591430664062 3 395.559305 1183.65609 0.45345 0.00017936 1.8017 0.00071269 2.2552 0.00089206 395.5598793873665 24.49 0.42259 21.663 21.486 21.908 -2.8273 64 23 4 0 0 0 0.44612 1 13272 13272 19.144 3.4053 1 28217000 + + 31338 16868 20594 21003 37153 37153 0.07160471080510433 LEGRFRRGF 9 Unmodified _LEGRFRRGF_ 0 0 0 ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 569.3170166015625 2 569.317432 1136.62031 NaN NaN NaN NaN NaN NaN NaN 65.912 1 59.737 59.237 60.237 -6.1757 0 0 0 0.6557 1 42827 42827 10.824 0.64053 1 31339 14627 20595 21004 37154 37154 0.057464784141757264 LEGTTGPLP 9 Unmodified _LEGTTGPLP_ 0 0 0 REV__ENST00000294484.6_2_1:11577566-11579522:+|nuORF REV__ENST00000294484.6_2_1:11577566-11579522:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 442.7406005859375 2 442.739825 883.465098 NaN NaN NaN NaN NaN NaN NaN 45.795 1 40.84 40.34 41.34 -4.9549 0 0 0 0.056448 1 28177 28177 54.774 10.367 1 + 31340 25254 20596 21005 37155 37155 0.01870389769248959 LEGWCDVEH 9 Unmodified _LEGWCDVEH_ 0 0 0 ENSG00000116661|ENST00000354287|FBXO2;ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENST00000466919.1_1_1:11710000-11714093:-|nuORF ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2313232421875 2 544.229299 1086.44404 0.64113 0.00034892 1.2558 0.00068343 1.8969 0.0010323 544.2298766992982 80.603 0.44999 80.11 79.906 80.356 -0.49247 49 18 4 0 0 0 0.55775 1 44120 44120 3.9444 0.3479 1 2035100 31341 3234 20597 21006 37156 37156 -0.09571943601918065 LEGWRWNR 8 Unmodified _LEGWRWNR_ 0 0 0 nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-3|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2;ENSG00000135457|ENST00000257915|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 nc|ENSG00000135457|Q12800-2|TFCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8613891601562 3 372.86143 1115.56246 -0.56258 -0.00020977 0.47781 0.00017816 -0.084773 -3.1608E-05 372.86156791038877 18.255 0.18728 18.269 18.168 18.355 0.013865 120 36 4 0 0 0 0.79527 1 9114 9114 8.7454 2.115 1 22099000 31342 4709 20598 21007 37157 37157 0.009302164887230902 LEHAHSTYN 9 Unmodified _LEHAHSTYN_ 0 0 0 REV__nc|ENSG00000259527|Q96N35|LINC00052 REV__nc|ENSG00000259527|Q96N35|LINC00052 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2391967773438 2 536.246338 1070.47812 1.0178 0.0005458 -4.416 -0.0023681 -3.3982 -0.0018223 536.2431164420545 50.361 0.53914 44.822 44.546 45.085 -5.5391 72 34 3 0 0 0 0.34999 1 31439 31439 14.838 0 1 28162000 + 31343 29991 20599 21008 37158 37158 -0.054297791186627364 LEHFYMEELPN 11 Unmodified _LEHFYMEELPN_ 0 0 0 ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENST00000490881.5_1_1:163291794-163297702:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.245361328125 3 474.551711 1420.6333 0.50957 0.00024182 1.6065 0.00076235 2.116 0.0010042 474.55260520914044 53.887 0.28236 53.42 53.265 53.547 -0.46664 33 13 3 0 0 0 0.30482 1 29150 29150 4.1166 1.2733 1 6146700 31344 14270 20600 21009 37159 37159 -0.06018916099242233 LEHGEEYTF 9 Unmodified _LEHGEEYTF_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.748291015625 2 562.748379 1123.4822 0.33044 0.00018596 1.5645 0.0008804 1.8949 0.0010664 562.749204474716 63.166 0.32958 63.166 62.985 63.315 0 30 13 3 0 0 0 0.2143 1 35227 35227 21.747 2.4897 1 2083300 31345 5659 20601 21010 37160 37160 -0.07459734415624553 LEHKDNELR 9 Unmodified _LEHKDNELR_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5;ENST00000534576.1_1_8:13880333-13880591:-|nuORF ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MSMS AL20221201_MKP_PDAC_01 4 577.3023681640625 2 577.301644 1152.58874 NaN NaN NaN NaN NaN NaN NaN 102.59 1 96.414 95.914 96.914 -6.1757 0 0 0 0.83049 1 68840 68840 3.9444 0.3479 1 31346 10186 20602 21011 37161 37161 0.018544408695561287 LEHLEPGGL 9 Unmodified _LEHLEPGGL_ 0 0 0 ENST00000555003.5_1_9:34658586-34660388:+|nuORF ENST00000555003.5_1_9:34658586-34660388:+|nuORF ENST00000555003.5_1_9:34658586-34660388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7592468261719 2 482.758549 963.502546 0.41482 0.00020026 0.1197 5.7786E-05 0.53452 0.00025805 482.7587332400859 47.209 0.32489 47.209 47.125 47.45 0 21 14 2 0 0 0 0.30562 1 25879 25879 16.942 2.104 1 1498700 31347 15221 20603 21012 37162 37162 0.019334810348709652 LEHMYHDL 8 Unmodified _LEHMYHDL_ 0 0 0 nc|ENSG00000160191|O76083-10|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;ENSG00000160191|ENST00000291539|PDE9A nc|ENSG00000160191|O76083-10|PDE9A nc|ENSG00000160191|O76083-10|PDE9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2430419921875 2 529.242209 1056.46987 0.37992 0.00020107 0.5893 0.00031188 0.96922 0.00051295 529.2426706878625 85.024 0.70749 85.024 84.704 85.411 0 190 35 7 0 0 0 0.80143 1 47209 47209 5.7604 0.52976 1 31985000 31348 6692 20604 21013 37163 37163 -0.05611049359640674 LEHMYHDL 8 Unmodified _LEHMYHDL_ 0 0 0 nc|ENSG00000160191|O76083-10|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;ENSG00000160191|ENST00000291539|PDE9A nc|ENSG00000160191|O76083-10|PDE9A nc|ENSG00000160191|O76083-10|PDE9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2422485351562 2 529.242209 1056.46987 0.42261 0.00022366 -0.71479 -0.00037829 -0.29218 -0.00015463 529.2419403578907 85.429 0.89544 84.928 84.624 85.52 -0.5015 371 61 7 0 0 0 0.80143 2 46734 46734;46941 5.7604 1.4312 1 197980000 31349 6692 20604 21013 37164;37165 37164 -0.05611049359640674 LEHRPQYL 8 Unmodified _LEHRPQYL_ 0 0 0 ENST00000587257.1_1_19:36426667-36427862:+|nuORF ENST00000587257.1_1_19:36426667-36427862:+|nuORF ENST00000587257.1_1_19:36426667-36427862:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.29052734375 2 528.285266 1054.55598 0.40569 0.00021432 -1.3671 -0.00072221 -0.96139 -0.00050789 528.2844923977011 83.936 0.84914 83.936 83.315 84.165 0 82 44 4 0 0 0 0.80676 1 46651 46651 2.5775 0.27475 1 5248700 31350 15636 20605 21014 37166 37166 0.0308827853737057 LEHVERPGD 9 Unmodified _LEHVERPGD_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7627563476562 2 526.261988 1050.50942 0.87729 0.00046169 0.073971 3.8928E-05 0.95126 0.00050061 526.2634753506289 73.349 1.2287 67.173 66.542 67.77 -6.1757 145 60 3 0 0 0 0.38785 1 47726 47726 13.042 0 1 48808000 31351 16188 20606 21015 37167 37167 -0.01381206084556652 LEHWCSYMI 9 Unmodified _LEHWCSYMI_ 0 0 0 REV__ENSG00000102010|ENST00000348343|BMX REV__ENSG00000102010|ENST00000348343|BMX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2587890625 2 591.259545 1180.50454 NaN NaN NaN NaN NaN NaN NaN 91.464 1 91.464 90.964 91.964 0 0 0 0 0.82739 1 50583 50583 4.3292 1.44 1 + 31352 18215 20607 21016 37168 37168 -0.07849549543198009 LEHYQWDL 8 Unmodified _LEHYQWDL_ 0 0 0 ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1 ENSG00000174292|ENST00000688331|TNK1 ENSG00000174292|ENST00000688331|TNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2642822265625 2 552.261456 1102.50836 0.42341 0.00023383 -2.0839 -0.0011509 -1.6605 -0.00091705 552.7600753781072 81.872 0.067284 81.872 81.841 81.908 0 5 4 2 0 0 0 0.80143 1 45417 45417 5.7604 1.0044 1 315690 31353 8409 20608 21017 37169 37169 -0.03879420453495186 LEIAEPEHF 9 Unmodified _LEIAEPEHF_ 0 0 0 REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7999267578125 2 542.769114 1083.52368 0.18859 0.00010236 0.97039 0.0005267 1.159 0.00062906 542.7704712018952 94.648 0.29154 94.227 94.129 94.42 -0.42044 20 14 2 0 0 0 0.19891 1 51719 51719 11.64 2.2929 1 455250 + 31354 21188 20609 21018 37170 37170 -0.014745536562713824 LEIAPQIYGF 10 Unmodified _LEIAPQIYGF_ 0 0 0 ENST00000465884.1_1_3:17380059-17413610:-|nuORF ENST00000465884.1_1_3:17380059-17413610:-|nuORF ENST00000465884.1_1_3:17380059-17413610:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8104858398438 2 575.810782 1149.60701 0.54341 0.0003129 -0.065694 -3.7827E-05 0.47771 0.00027507 575.8104880127654 92.46 0.18987 91.979 91.858 92.048 -0.48092 13 8 2 0 0 0 0.69064 1 50522 50522 3.9444 0 1 247060 31355 13744 20610 21019 37171 37171 0.038191827915625254 LEIESYAYTE 10 Unmodified _LEIESYAYTE_ 0 0 0 nc|ENSG00000146276|P24046-3|GABRR1;nc|ENSG00000146276|P24046-2|GABRR1;ENSG00000146276|ENST00000454853|GABRR1 nc|ENSG00000146276|P24046-3|GABRR1 nc|ENSG00000146276|P24046-3|GABRR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.28515625 2 609.282251 1216.54995 0.17236 0.00010502 2.3965 0.0014601 2.5688 0.0015651 609.283635450787 50.569 0.22817 50.569 50.456 50.685 0 26 10 3 0 0 0 0.67459 1 27856 27856 5.7319 0.43497 1 4594500 31356 5768 20611 21020 37172 37172 -0.049663292754758004 LEIHFFPLF 9 Unmodified _LEIHFFPLF_ 0 0 0 ENST00000468823.1_1_X:100653763-100655794:-|nuORF ENST00000468823.1_1_X:100653763-100655794:-|nuORF ENST00000468823.1_1_X:100653763-100655794:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.81884765625 2 581.81841 1161.62227 1.3547 0.00078821 -3.6817 -0.0021421 -2.327 -0.0013539 582.3179184949707 97.605 0.18606 91.429 91.366 91.553 -6.1757 21 10 3 0 0 0 0.11784 1 64710 64710 42.095 19.358 1 32616000 31357 13818 20612 21021 37173 37173 0.04792094379399714 LEIRKPGPF 9 Unmodified _LEIRKPGPF_ 0 0 0 nc|ENSG00000221986|A2RUH7-2|MYBPHL;ENSG00000221986|ENST00000357155|MYBPHL nc|ENSG00000221986|A2RUH7-2|MYBPHL nc|ENSG00000221986|A2RUH7-2|MYBPHL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.812255859375 2 528.813659 1055.61277 NaN NaN NaN NaN NaN NaN NaN 37.709 1 37.726 37.226 38.226 0.01704 0 0 0 0.76439 1 20031 20031 7.2892 0 1 31358 10567 20613 21022 37174 37174 0.08718326093890028 LEIRPTLMKRF 11 Unmodified _LEIRPTLMKRF_ 0 0 0 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.8738403320312 4 351.710245 1402.81188 1.8601 0.0006542 2.0404 0.00071765 3.9005 0.0013718 351.71105270814235 20.649 0.24488 17.956 17.82 18.065 -2.693 23 15 2 0 0 0 0.30321 1 10994 10994 5.8681 3.2369 1 1996900 + 31359 20336 20614 21023 37175 37175 0.1265821833026166 LEIWEDLKI 9 Unmodified _LEIWEDLKI_ 0 0 0 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.885009765625 3 386.885018 1157.63323 -0.38237 -0.00014793 1.735 0.00067125 1.3526 0.00052331 387.21988871038775 35.479 0.22125 35.256 35.151 35.372 -0.2224 16 9 3 0 0 0 0.38785 1 18577 18577 13.042 2.8919 1 6156900 31360 608 20615 21024 37176 37176 0.06071451963043728 LEIWGGEQY 9 Unmodified _LEIWGGEQY_ 0 0 0 nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000519544.5_1_5:153755916-153785640:+|nuORF;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-3|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7626953125 2 547.761289 1093.50803 0.29487 0.00016152 -0.18569 -0.00010171 0.10918 5.9803E-05 547.7610447135557 77.885 0.34051 77.885 77.689 78.03 0 27 15 3 0 0 0 0.49272 1 43258 43258 7.9102 2.1497 1 998080 31361 7206;8423 20616 21025 37177 37177 -0.034988401733244245 LEIWGGEQY 9 Unmodified _LEIWGGEQY_ 0 0 0 nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10;ENST00000519544.5_1_5:153755916-153785640:+|nuORF;ENST00000520647.5_1_5:153755841-153792087:+|nuORF;nc|ENSG00000164574|Q86SR1-3|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6;ENSG00000174473|ENST00000506823|GALNTL6 nc|ENSG00000164574|Q86SR1-2|GALNT10;nc|ENSG00000174473|Q49A17-2|GALNTL6 nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.761289 1093.50803 -0.49742 -0.00027246 -2.8481 -0.0015601 -3.3455 -0.0018326 547.7588910521248 78.347 0.1541 77.861 77.757 77.911 -0.48596 -0.012111 -0.0026598 NaN 7.9102 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 818560 31362 7206;8423 20616 21025 -0.034988401733244245 LEKAATTAT 9 Unmodified _LEKAATTAT_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENST00000590599.1_1_18:77496343-77513668:+|nuORF nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS AL20221201_MKP_PDAC_01 4 453.250244140625 2 453.250557 904.486562 NaN NaN NaN NaN NaN NaN NaN 94.434 1 88.258 87.758 88.758 -6.1757 0 0 0 0.79771 1 62548 62548 6.2058 0.97511 1 31363 16035 20617 21026 37178 37178 0.030497747979552514 LEKAKAAK 8 Unmodified _LEKAKAAK_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;ENST00000482952.5_1_2:233671364-233680450:+|nuORF nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.7733459472656 2 429.774003 857.533452 -0.045096 -1.9381E-05 -0.26959 -0.00011586 -0.31469 -0.00013524 429.7734780083426 39.336 0.12032 39.049 38.981 39.101 -0.28687 9 5 2 0 0 0 0.55032 1 20764 20764 30.225 0 1 1832600 31364 10242 20618 21027 37179 37179 0.09898679139746491 LEKEAERLRQ 10 Unmodified _LEKEAERLRQ_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.9074096679688 3 424.573726 1270.69935 -0.39986 -0.00016977 -0.5193 -0.00022048 -0.91916 -0.00039025 424.5736552931564 21.064 0.10237 21.064 21.008 21.111 0 16 12 2 0 0 0 0.7042 1 10630 10630 2.4348 1.5704 1 1072600 31365 7678 20619 21028 37180 37180 0.07482660857795054 LEKEEKLIF 9 Unmodified _LEKEEKLIF_ 0 0 0 REV__nc|ENSG00000101958|P23416-3|GLRA2 REV__nc|ENSG00000101958|P23416-3|GLRA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5572814941406 3 383.556902 1147.64888 NaN NaN NaN NaN NaN NaN NaN 19.89 1 19.898 19.398 20.398 0.0078487 0 0 0 0.84737 1 10130 10130 0.96228 0 1 + 31366 18207 20620 21029 37181 37181 0.0809573848009677 LEKEIQKML 9 Unmodified _LEKEIQKML_ 0 0 0 ENST00000418919.6_1_12:65108638-65108725:-|nuORF ENST00000418919.6_1_12:65108638-65108725:-|nuORF ENST00000418919.6_1_12:65108638-65108725:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8859558105469 3 377.886253 1130.63693 1.3764 0.00052011 -2.689 -0.0010161 -1.3126 -0.00049601 377.8854394572493 39.301 0.089527 34.85 34.825 34.914 -4.4509 7 4 3 0 0 0 0.29507 1 23344 23344 17.443 3.0373 1 7449600 31367 13077 20621 21030 37182 37182 0.0768379846526841 LEKELISV 8 Unmodified _LEKELISV_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7791137695312 2 465.778951 929.543348 0.32563 0.00015167 0.18822 8.7671E-05 0.51385 0.00023934 465.7789157131516 92.558 0.28268 92.077 91.927 92.209 -0.48092 24 13 2 0 0 0 0.80722 1 50658 50658 2.3027 0 1 559950 31368 8832 20622 21031 37183 37183 0.07575822354488082 LEKELVSKY 9 Unmodified _LEKELVSKY_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.9073486328125 3 370.213135 1107.61758 1.5772 0.0005839 2.2577 0.00083585 3.835 0.0014198 370.54865926769315 42.006 0.25471 37.321 37.186 37.44 -4.6846 42 15 4 0 0 0 0.20727 1 25275 25275 0.96228 0 1 27252000 31369 1648 20623 21032 37184 37184 0.06807165446025465 LEKGKEKMGL 10 Unmodified _LEKGKEKMGL_ 0 0 0 ENST00000518853.5_3_6:109416421-109466422:+|nuORF ENST00000518853.5_3_6:109416421-109466422:+|nuORF ENST00000518853.5_3_6:109416421-109466422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.822021484375 2 566.823366 1131.63218 0.86062 0.00048782 -2.0843 -0.0011814 -1.2236 -0.00069359 566.8222729357377 73.702 0.25049 73.226 73.092 73.342 -0.47588 14 10 2 0 0 0 0.62068 1 40305 40305 10.074 0 1 1129500 31370 14696 20624 21033 37185 37185 0.07162914322498182 LEKKEKDDEV 10 Unmodified _LEKKEKDDEV_ 0 0 0 REV__nc|ENSG00000185946|Q96LT9-2|RNPC3 REV__nc|ENSG00000185946|Q96LT9-2|RNPC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5503540039062 3 411.550475 1231.6296 NaN NaN NaN NaN NaN NaN NaN 20.116 1 20.144 19.644 20.644 0.028357 0 0 0 1.0024 1 10172 10172 0.13989 0 1 + 31371 23537 20625 21034 37186 37186 0.02304737398526413 LEKKKKKYK 9 Unmodified _LEKKKKKYK_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MSMS AL20221201_MKP_PDAC_01 4 596.8936767578125 2 596.892441 1191.77033 NaN NaN NaN NaN NaN NaN NaN 104.31 1 98.132 97.632 98.632 -6.1757 0 0 0 0.85852 1 69865 69865 0.45834 0.057624 1 + 31372 29773 20626 21035 37187 37187 0.1821140563326935 LEKLESKNL 9 Unmodified _LEKLESKNL_ 0 0 0 REV__ENST00000468373.1_1_1:153516388-153518231:-|nuORF REV__ENST00000468373.1_1_1:153516388-153518231:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2649536132812 2 537.313689 1072.61282 NaN NaN NaN NaN NaN NaN NaN 65.45 1 65.45 64.95 65.95 0 0 0 0 0.83049 1 36506 36506 3.9444 0 1 + 31373 23797 20627 21036 37188 37188 0.07942281303257914 LEKLLFTLI 9 Unmodified _LEKLLFTLI_ 0 0 0 REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.8519287109375 2 545.349543 1088.68453 1.4754 0.00080459 3.5149 0.0019169 4.9903 0.0027215 545.3505088074166 106.71 0.067665 100.53 100.47 100.54 -6.1757 20 11 2 0 0 0 0.21897 1 71412 71412 0.45834 0 1 2674800 + 31374 28426 20628 21037 37189 37189 0.1437382072776927 LEKLLPLI 8 Unmodified _LEKLLPLI_ 0 0 0 REV__nc|ENSG00000083312|Q92973-3|TNPO1 REV__nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.5310668945312 1 938.628481 937.621205 0.60829 0.00057096 1.1396 0.0010697 1.7479 0.0016406 938.6291194581908 101.5 0.099014 95.32 95.252 95.351 -6.1757 8 4 2 0 0 0 0.70294 1 68063 68063 16.942 0 1 10396000 + 31375 17717 20629 21038 37190 37190 0.14989880010523393 LEKLQLNI 8 Unmodified _LEKLQLNI_ 0 0 0 nc|ENSG00000153904|O94760-2|DDAH1;ENSG00000153904|ENST00000284031|DDAH1 nc|ENSG00000153904|O94760-2|DDAH1 nc|ENSG00000153904|O94760-2|DDAH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.2705383300781 2 485.800217 969.585882 1.0494 0.00050981 -0.32328 -0.00015705 0.72613 0.00035276 485.8003619144041 95.021 0.16411 88.845 88.748 88.912 -6.1757 12 8 2 0 0 0 8.7369 1 62875 62875 2.3027 0 1 5584300 31376 6279 20630 21039 37191 37191 0.09987217482705546 LEKNGGRF 8 Unmodified _LEKNGGRF_ 0 0 0 REV__ENSG00000162105|ENST00000601538|SHANK2 REV__ENSG00000162105|ENST00000601538|SHANK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.25390625 2 460.751059 919.487565 0.7737 0.00035649 1.3191 0.00060779 2.0928 0.00096427 460.75110888785997 40.585 0.36934 36.055 35.889 36.258 -4.5294 39 22 2 0 0 0 8.7369 1 24191 24191 15.847 5.0233 1 17522000 + 31377 21626 20631 21040 37192 37192 0.024600339575385988 LEKNLLWPL 9 Unmodified _LEKNLLWPL_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1;REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.81103515625 2 563.336967 1124.65938 0.86197 0.00048558 -0.66181 -0.00037282 0.20016 0.00011276 563.3367458055059 68.196 0.1908 68.221 68.127 68.318 0.025154 13 9 2 0 0 0 0.15672 1 37516 37516 26.884 9.9414 1 1689000 + 31378 18921;19749 20632 21041 37193 37193 0.10203765925189145 LEKNMFTKEA 10 Unmodified _LEKNMFTKEA_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2094116210938 3 404.209396 1209.60636 -0.40811 -0.00016496 1.026 0.0004147 0.61786 0.00024974 404.21001346249625 23.989 0.55057 23.989 23.623 24.174 0 83 27 5 0 0 0 0.6785 1 12286 12286 2.8433 0.59056 1 8930000 31379 544 20633 21042 37194 37194 0.009940200802248 LEKNWMKFI 9 Unmodified _LEKNWMKFI_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5549926757812 3 403.554727 1207.64235 0.27817 0.00011226 0.65798 0.00026553 0.93615 0.00037779 403.55510270897923 12.03 0.22382 9.5475 9.4249 9.6487 -2.482 122 46 3 0 0 0 0.49766 1 6107 6107 7.609 0 1 7050700 + 31380 21641 20634 21043 37195 37195 0.046835220477305484 LEKQLIEL 8 Unmodified _LEKQLIEL_ 0 0 0 ENST00000517936.1_1_5:162887680-162896865:+|nuORF;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR ENST00000517936.1_1_5:162887680-162896865:+|nuORF ENST00000517936.1_1_5:162887680-162896865:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.8060607910156 2 493.30005 984.585547 0.3004 0.00014819 1.0546 0.00052026 1.355 0.00066844 493.300536792673 57.92 0.38084 51.893 51.698 52.078 -6.0275 38 21 2 0 0 0 0.58039 1 36978 36978 27.629 0 1 48931000 31381 1087 20635 21044 37196 37196 0.09263797762855575 LEKRPMISNR 10 Unmodified _LEKRPMISNR_ 0 0 0 REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF REV__ENST00000371368.5_1_1:54412201-54413639:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.2361145019531 3 415.236168 1242.68668 NaN NaN NaN NaN NaN NaN NaN 92.682 1 86.507 86.007 87.007 -6.1757 0 0 0 0.71157 1 61299 61299 10.315 1.0715 1 + 31382 26082 20636 21045 37197 37197 0.07503926193908228 LEKRYATLN 9 Unmodified _LEKRYATLN_ 0 0 0 REV__ENSG00000106789|ENST00000375077|CORO2A REV__ENSG00000106789|ENST00000375077|CORO2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8326416015625 2 554.31148 1106.60841 0.37267 0.00020658 -0.45119 -0.0002501 -0.07852 -4.3525E-05 554.3109239551259 41.001 0.16227 40.999 40.891 41.053 -0.0017929 11 7 2 0 0 0 0.18482 1 21892 21892 18.146 1.9972 1 2435800 + 31383 18536 20637 21046 37198 37198 0.05936816880330298 LEKRYKKI 8 Unmodified _LEKRYKKI_ 0 0 0 REV__nc|ENSG00000103197|P49815-7|TSC2 REV__nc|ENSG00000103197|P49815-7|TSC2 MSMS AL20221201_MKP_PDAC_01 4 539.3424682617188 2 539.342584 1076.67061 NaN NaN NaN NaN NaN NaN NaN 107.04 1 100.87 100.37 101.37 -6.1757 0 0 0 0.97444 1 71620 71620 0.6015 0 1 + 31384 18291 20638 21047 37199 37199 0.13534588019319926 LEKSGVNL 8 Unmodified _LEKSGVNL_ 0 0 0 ENSG00000120254|ENST00000367321|MTHFD1L;nc|ENSG00000120254|Q6UB35-2|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2498779296875 2 430.247818 858.481082 0.78806 0.00033906 0.023138 9.9549E-06 0.81119 0.00034901 430.247864629166 29.177 0.088799 25.876 25.831 25.92 -3.3016 7 5 2 0 0 0 0.18875 1 16353 16353 74.423 2.5005 1 26012000 31385 3502 20639 21048 37200 37200 0.046180960061633414 LELAFHGG 8 Unmodified _LELAFHGG_ 0 0 0 REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF REV__ENST00000524013.1_1_8:128748556-128750522:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.221923828125 2 422.221603 842.428653 0.23735 0.00010022 0.76633 0.00032356 1.0037 0.00042378 422.2219072354608 40.061 0.19378 39.764 39.649 39.843 -0.29716 12 8 2 0 0 0 0.65867 1 21161 21161 20.871 0 1 1730400 + 31386 24952 20640 21049 37201 37201 0.0011355766320093608 LELAPTEA 8 Unmodified _LELAPTEA_ 0 0 0 REV__nc|ENSG00000188986|Q8WX92|NELFB REV__nc|ENSG00000188986|Q8WX92|NELFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2277221679688 2 422.226551 842.438549 NaN NaN NaN NaN NaN NaN NaN 55.747 1 55.747 55.247 56.247 0 0 0 0 0.97444 1 30980 30980 5.2307 0 1 + 31387 23749 20641 21050 37202 37202 0.011027008779137759 LELEMPTP 8 Oxidation (M) _LELEM(Oxidation (M))PTP_ LELEM(1)PTP LELEM(42)PTP 0 0 1 nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B nc|ENSG00000204084|P32019-4|INPP5B nc|ENSG00000204084|P32019-4|INPP5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.4636840820312 1 945.459761 944.452484 -0.16616 -0.00015709 1.5385 0.0014546 1.3724 0.0012975 945.4607388299481 72.615 0.21553 72.615 72.461 72.676 0 11 8 2 0 0 0 0.42423 1 40384 40384 42.095 11.87 1 531940 31388 10240 20642 21051 37203 37203 1662 -0.021963896852980724 LELEMWKEMQE 11 Unmodified _LELEMWKEMQE_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 733.840087890625 2 733.33872 1464.66289 -0.33209 -0.00024354 -0.16768 -0.00012297 -0.49977 -0.0003665 733.3383880135867 71.489 0.33522 71.489 71.363 71.699 0 29 14 3 0 0 0 0.7326 1 39807 39807 1.1933 0 1 1349200 31389 7819 20643 21052 37204 37204 -0.05085720145439154 LELGCGTGANF 11 Unmodified _LELGCGTGANF_ 0 0 0 ENSG00000170439|ENST00000394252|METTL7B ENSG00000170439|ENST00000394252|METTL7B ENSG00000170439|ENST00000394252|METTL7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2517700195312 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 85.589 1 85.088 84.588 85.588 -0.5015 0 0 0 0.93933 1 46843 46843 2.9952 0.10602 1 31390 7985 20644 21053 37205 37205 -0.0460308405079104 LELGQQLLL 9 Unmodified _LELGQQLLL_ 0 0 0 ENST00000392064.6_2_1:174846585-174846636:+|nuORF ENST00000392064.6_2_1:174846585-174846636:+|nuORF ENST00000392064.6_2_1:174846585-174846636:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.8140258789062 2 513.813325 1025.6121 0.57569 0.0002958 -0.32462 -0.0001668 0.25106 0.000129 513.8133952465403 50.879 0.18239 50.879 50.813 50.996 0 17 10 3 0 0 0 0.15471 1 28092 28092 27.629 1.3607 1 2081200 31391 12663 20645 21054 37206 37206 0.10031486654202126 LELGSYLHLLD 11 Unmodified _LELGSYLHLLD_ 0 0 0 REV__ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant REV__ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 636.3770751953125 2 636.845353 1271.67615 1.0058 0.00064055 1.2128 0.00077238 2.2186 0.0014129 636.8461693944411 96.261 0.22137 90.085 89.944 90.166 -6.1757 18 13 2 0 0 0 0.18797 1 63755 63755 31.268 16.02 1 10706000 + 31392 16921 20646 21055 37207 37207 0.05118222020473695 LELHQRFL 8 Unmodified _LELHQRFL_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5362548828125 3 352.538064 1054.59236 NaN NaN NaN NaN NaN NaN NaN 20.711 1 20.711 20.211 21.211 0 0 0 0 0.9489 1 10435 10435 10.824 0 1 31393 492 20647 21056 37208 37208 0.06725155434082808 LELINPHHF 9 Unmodified _LELINPHHF_ 0 0 0 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 REV__nc|ENSG00000090376|Q9Y616-2|IRAK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5373229980469 3 373.869703 1118.58728 1.279 0.00047817 -0.22349 -8.3554E-05 1.0555 0.00039462 373.869734533884 47.025 0.39264 41.944 41.818 42.211 -5.0805 56 34 2 0 0 0 0.39863 1 29128 29128 12.241 0 1 28654000 + 31394 17856 20648 21057 37209 37209 0.032728515714552486 LELIQTRSSSR 11 Unmodified _LELIQTRSSSR_ 0 0 0 ENSG00000103657|ENST00000443617|HERC1;ENST00000560983.1_1_15:64010754-64015453:-|nuORF ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3656616210938 2 645.362233 1288.70991 3.5189 0.002271 -0.57908 -0.00037372 2.9398 0.0018972 645.361972082633 97.804 0.88768 97.786 97.604 98.491 -0.018188 101 32 5 0 0 0 0.69708 1 54601 54601 4.5289 0.33936 1 18243000 31395 2158 20649 21058 37210 37210 0.07710643512223214 LELKQNLI 8 Unmodified _LELKQNLI_ 0 0 0 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 ENSG00000053372|ENST00000330263|MRTO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.80078125 2 485.800217 969.585882 0.71108 0.00034544 -0.34907 -0.00016958 0.362 0.00017586 485.8002020375367 53.979 0.1932 53.979 53.858 54.051 0 15 8 2 0 0 0 0.55032 1 29958 29958 30.225 0 1 1781900 31396 745 20650 21059 37211 37211 0.09987217482705546 LELLLLLRRLH 11 Unmodified _LELLLLLRRLH_ 0 0 0 ENST00000379162.8_1_X:24483408-24483594:+|nuORF ENST00000379162.8_1_X:24483408-24483594:+|nuORF ENST00000379162.8_1_X:24483408-24483594:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 694.9613647460938 2 694.958646 1387.90274 NaN NaN NaN NaN NaN NaN NaN 85.269 1 79.093 78.593 79.593 -6.1757 0 0 0 0.94165 1 56145 56145 1.3295 0.13619 1 31397 12561 20651 21060 37212 37212 0.22430430370081922 LELLRHCEF 9 Unmodified _LELLRHCEF_ 0 0 0 REV__ENST00000465716.1_1_3:9976275-9979984:+|nuORF REV__ENST00000465716.1_1_3:9976275-9979984:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.298095703125 2 580.300059 1158.58556 0.10693 6.2051E-05 -3.821 -0.0022173 -3.714 -0.0021553 580.2978802961859 69.149 0.2925 68.668 68.58 68.873 -0.48071 21 12 3 0 0 0 0.209 1 37868 37868 7.2892 0.56607 1 1547800 + 31398 21805 20652 21061 37213 37213 0.012614744912070819 LELQPWMY 8 Unmodified _LELQPWMY_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.264892578125 2 540.265153 1078.51575 0.23765 0.00012839 -1.0558 -0.00057042 -0.81817 -0.00044203 540.2641812756527 75.916 0.34887 75.916 75.672 76.021 0 33 15 3 0 0 0 0.78849 1 42251 42251 9.3474 0.75416 1 1542700 31399 7281 20653 21062 37214 37214 -0.02036404177397344 LELRDIELV 9 Unmodified _LELRDIELV_ 0 0 0 ENSG00000136274|ENST00000490531|NACAD ENSG00000136274|ENST00000490531|NACAD ENSG00000136274|ENST00000490531|NACAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.2176818847656 3 367.216768 1098.62847 -0.32412 -0.00011902 2.1926 0.00080514 1.8684 0.00068612 367.2177544116929 23.582 0.2145 23.582 23.427 23.641 0 16 10 2 0 0 0 0.46501 1 12004 12004 9.3831 2.7528 1 852600 31400 4811 20654 21063 37215 37215 0.08310567820262804 LELRTFEEL 9 Unmodified _LELRTFEEL_ 0 0 0 ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2825317382812 2 575.311146 1148.60774 0.79308 0.00045627 0.66199 0.00038085 1.4551 0.00083711 575.3105510945727 60.201 0.25394 60.201 60.068 60.322 0 15 10 2 0 0 0 0.21185 1 33595 33595 6.2058 0 1 507400 31401 1672 20655 21064 37216 37216 0.03937977440614304 LELSQQIRKY 10 Unmodified _LELSQQIRKY_ 0 0 0 REV__ENSG00000121446|ENST00000294854|RGSL1 REV__ENSG00000121446|ENST00000294854|RGSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5790405273438 3 426.578588 1276.71394 0.21624 9.2244E-05 0.74321 0.00031704 0.95945 0.00040928 426.57885729507325 28.27 0.49236 28.299 28.188 28.681 0.029566 40 19 3 0 0 0 0.70895 1 14841 14841 1.9064 0.1641 1 8076800 + 31402 19294 20656 21065 37217 37217 0.08664733005957714 LELSQYSNL 9 Unmodified _LELSQYSNL_ 0 0 0 REV__ENSG00000255378|ENST00000528972|PRR23D2 REV__ENSG00000255378|ENST00000528972|PRR23D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7742919921875 2 533.774396 1065.53424 0.71673 0.00038257 -0.54398 -0.00029036 0.17275 9.2212E-05 533.7742170024981 79.378 0.37058 78.889 78.704 79.075 -0.48932 36 15 3 0 0 0 0.30562 1 43449 43449 16.942 0 1 4083800 + 31403 24533 20657 21066 37218 37218 0.004094289981367183 LELSQYSNL 9 Unmodified _LELSQYSNL_ 0 0 0 REV__ENSG00000255378|ENST00000528972|PRR23D2 REV__ENSG00000255378|ENST00000528972|PRR23D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.774396 1065.53424 0.30027 0.00016028 0.014879 7.9419E-06 0.31515 0.00016822 533.774283265239 78.852 0.23164 78.852 78.698 78.929 0 -0.018601 0.00043299 NaN 16.942 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 502710 + 31404 24533 20657 21066 0.004094289981367183 LELSQYSNL 9 Unmodified _LELSQYSNL_ 0 0 0 REV__ENSG00000255378|ENST00000528972|PRR23D2 REV__ENSG00000255378|ENST00000528972|PRR23D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.774396 1065.53424 0.71673 0.00038257 -0.54398 -0.00029036 0.17275 9.2212E-05 533.7742170024981 79.378 0.37058 78.889 78.704 79.075 -0.48932 0.018601 -0.00016361 NaN 16.942 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4083800 + 31405 24533 20657 21066 0.004094289981367183 LEMFGFPPAF 10 Unmodified _LEMFGFPPAF_ 0 0 0 REV__ENST00000589004.5_1_17:74622410-74625315:-|nuORF REV__ENST00000589004.5_1_17:74622410-74625315:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 578.2846069335938 2 578.280803 1154.54705 NaN NaN NaN NaN NaN NaN NaN 87.113 1 80.938 80.438 81.438 -6.1757 0 0 0 0.51756 1 57430 57430 25.399 0 1 + 31406 17473 20658 21067 37219 37219 -0.02403831143305979 LEMHICWF 8 Unmodified _LEMHICWF_ 0 0 0 ENST00000529637.5_1_1:22055191-22056289:-|nuORF ENST00000529637.5_1_1:22055191-22056289:-|nuORF ENST00000529637.5_1_1:22055191-22056289:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.284423828125 2 539.746073 1077.47759 0.45001 0.00024289 -2.2475 -0.0012131 -1.7975 -0.0009702 539.7458020285204 66.794 0.19926 66.794 66.679 66.878 0 10 8 2 0 0 0 8.7369 1 37213 37213 5.7604 0.52976 1 793460 31407 14876 20659 21068 37220 37220 -0.058046133637390085 LEMKDIQQA 9 Unmodified _LEMKDIQQA_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.27734375 2 538.276249 1074.53795 0.60939 0.00032802 1.212 0.00065238 1.8214 0.0009804 538.2767960928885 74.984 0.52426 74.506 74.131 74.656 -0.47714 50 21 3 0 0 0 0.34134 1 41031 41031 15.248 0.41021 1 4411100 31408 10745 20660 21069 37221 37221 0.0036577550038146 LEMKDIQQA 9 Unmodified _LEMKDIQQA_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2774658203125 2 538.276249 1074.53795 0.28703 0.0001545 1.6248 0.00087458 1.9118 0.0010291 538.2769812905427 82.326 0.42268 76.151 75.9 76.323 -6.1757 55 22 3 0 0 0 0.32235 1 54096 54096 16.149 1.3108 1 37633000 31409 10745 20660 21069 37222 37222 0.0036577550038146 LEMKDIQQA 9 Unmodified _LEMKDIQQA_ 0 0 0 ENSG00000248905|ENST00000616417|FMN1;nc|ENSG00000248905|Q68DA7-5|FMN1;ENST00000558628.1_1_15:33200689-33218453:-|nuORF ENSG00000248905|ENST00000616417|FMN1 ENSG00000248905|ENST00000616417|FMN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.276249 1074.53795 0.48635 0.00026179 0.42632 0.00022948 0.91267 0.00049127 538.276417017547 74.482 0.39472 74.482 74.21 74.604 0 -0.012157 -0.00060377 NaN 15.248 31 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1769900 31410 10745 20660 21069 0.0036577550038146 LEMLQDVSF 9 Unmodified _LEMLQDVSF_ 0 0 0 REV__ENST00000467374.1_1_1:156561697-156562477:+|nuORF REV__ENST00000467374.1_1_1:156561697-156562477:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 541.0018310546875 2 541.26535 1080.51615 NaN NaN NaN NaN NaN NaN NaN 102.19 1 96.013 95.513 96.513 -6.1757 0 0 0 0.7453 1 68582 68582 7.9102 2.6795 1 + 31411 21757 20661 21070 37223 37223 -0.02089029248213592 LEMRYDHH 8 Unmodified _LEMRYDHH_ 0 0 0 REV__ENSG00000137098|ENST00000396638|SPAG8;REV__nc|ENSG00000137098|Q99932-2|SPAG8;REV__ENST00000472605.1_1_9:35810342-35810636:-|nuORF REV__ENSG00000137098|ENST00000396638|SPAG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.751953125 2 550.750733 1099.48691 0.37618 0.00020718 0.9424 0.00051903 1.3186 0.00072621 550.7520381794069 78.924 0.33728 78.924 78.738 79.076 0 21 15 2 0 0 0 0.80311 1 43849 43849 4.756 0 1 685120 + 31412 20213;29652;27521 20662 21071 37224 37224 -0.05885128753857316 LEMVMPPS 8 Unmodified _LEMVMPPS_ 0 0 0 ENST00000566601.1_1_16:74502729-74503008:-|nuORF ENST00000566601.1_1_16:74502729-74503008:-|nuORF ENST00000566601.1_1_16:74502729-74503008:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.21923828125 2 452.219357 902.424161 NaN NaN NaN NaN NaN NaN NaN 21.032 1 21.032 20.532 21.532 0 0 0 0 0.97444 1 10616 10616 5.2307 0 1 31413 15420 20663 21072 37225 37225 -0.030954108662285762 LEMVRVPFL 9 Unmodified _LEMVRVPFL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.313720703125 2 552.31772 1102.62089 0.61859 0.00034166 -0.53649 -0.00029631 0.082097 4.5344E-05 552.820942207014 68.029 0.15929 61.853 61.816 61.975 -6.1757 14 8 2 0 0 0 0.078314 1 44401 44401 38.176 5.3899 1 16621000 31414 5735 20664 21073 37226 37226 0.07368137019011556 LEMYDYFF 8 Unmodified _LEMYDYFF_ 0 0 0 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 REV__nc|ENSG00000206530|Q96MT7-1|CFAP44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2503662109375 2 564.241344 1126.46813 NaN NaN NaN NaN NaN NaN NaN 70.552 1 70.552 70.052 71.052 0 0 0 0 0.97444 1 39308 39308 2.5775 0 1 + 31415 24256 20665 21074 37227 37227 -0.090041031682631 LENCLTDRV 9 Unmodified _LENCLTDRV_ 0 0 0 REV__ENSG00000188779|ENST00000380035|SKOR1 REV__ENSG00000188779|ENST00000380035|SKOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7664184570312 2 531.766049 1061.51754 -0.74695 -0.0003972 -2.0646 -0.0010979 -2.8115 -0.0014951 531.7649721002273 32.214 0.23215 32.214 32.084 32.316 0 25 11 3 0 0 0 0.15471 1 16795 16795 27.629 6.0918 1 8887500 + 31416 23728 20666 21075 37228 37228 -0.010753951594551836 LENEDFIKI 9 Unmodified _LENEDFIKI_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7981567382812 2 560.797872 1119.58119 0.36308 0.00020362 0.29325 0.00016445 0.65633 0.00036807 560.7979834978543 87.613 0.61095 87.613 87.244 87.855 0 90 27 5 0 0 0 0.094149 3 48486 48386;48486;48586 34.402 4.7636 1 9315300 + 31417 17456 20667 21076 37229;37230;37231 37230 0.02618288549274439 LENEDFIKI 9 Unmodified _LENEDFIKI_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7981567382812 2 560.797872 1119.58119 0.65218 0.00036574 0.12541 7.033E-05 0.77759 0.00043607 560.7979489090422 88.134 0.46415 87.63 87.382 87.847 -0.50423 49 21 3 0 0 0 0.12424 1 48224 48224 30.637 0 1 4469400 + 31418 17456 20667 21076 37232 37232 0.02618288549274439 LENEDFIKI 9 Unmodified _LENEDFIKI_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.797872 1119.58119 0.36308 0.00020362 0.29325 0.00016445 0.65633 0.00036807 560.7979834978543 87.613 0.61095 87.613 87.244 87.855 0 -0.0085591 6.4657E-05 NaN 34.402 90 27 5 NaN NaN NaN NaN 0 NaN NaN 0 9315300 + 31419 17456 20667 21076 0.02618288549274439 LENEDFIKI 9 Unmodified _LENEDFIKI_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.797872 1119.58119 0.65218 0.00036574 0.12541 7.033E-05 0.77759 0.00043607 560.7979489090422 88.134 0.46415 87.63 87.382 87.847 -0.50423 0.0085591 -0.00012359 NaN 34.402 49 21 3 NaN NaN NaN NaN 0 NaN NaN 0 4469400 + 31420 17456 20667 21076 0.02618288549274439 LENELSPKE 9 Unmodified _LENELSPKE_ 0 0 0 REV__ENSG00000170903|ENST00000301919|MSANTD4 REV__ENSG00000170903|ENST00000301919|MSANTD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.8089599609375 2 529.771854 1057.52915 0.45783 0.00024254 2.4486 0.0012972 2.9065 0.0015398 529.7732676483861 72.515 0.15229 72.515 72.387 72.539 0 8 5 2 0 0 0 0.091436 1 40385 40385 41.84 3.8656 1 567080 + 31421 22520 20668 21077 37233 37233 0.002691251355372515 LENIPFAFDLY 11 Unmodified _LENIPFAFDLY_ 0 0 0 REV__CON__Q28065 REV__CON__Q28065 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.8946533203125 3 447.895695 1340.66525 -0.35518 -0.00015908 -1.9813 -0.0008874 -2.3364 -0.0010465 447.8949603223859 21.117 0.15669 21.146 21.074 21.231 0.028357 14 8 2 0 0 0 0.6747 1 10709 10709 3.3557 0 1 3240700 + + 31422 16862 20669 21078 37234 37234 0.008548196462015767 LENISLLSL 9 Unmodified _LENISLLSL_ 0 0 0 ENST00000356142.4_1_7:6426883-6431586:+|nuORF ENST00000356142.4_1_7:6426883-6431586:+|nuORF ENST00000356142.4_1_7:6426883-6431586:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7793579101562 2 501.297507 1000.58046 0.59323 0.00029738 0.86502 0.00043363 1.4582 0.00073101 501.2978553973855 66.982 0.15387 66.982 66.931 67.085 0 9 6 2 0 0 0 0.19891 1 37385 37385 7.2892 0 1 712400 31423 12087 20670 21079 37235 37235 0.08019493900246744 LENIWQYI 8 Unmodified _LENIWQYI_ 0 0 0 REV__nc|ENSG00000144580|Q92600-3|CNOT9 REV__nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2808837890625 2 539.782025 1077.5495 0.10185 5.4976E-05 -0.17622 -9.5121E-05 -0.074373 -4.0145E-05 539.7824265643776 55.056 0.55534 54.578 54.328 54.883 -0.47798 41 26 2 0 0 0 0.76266 1 29940 29940 11.64 0.81637 1 14951000 + 31424 20717 20671 21080 37236 37236 0.013823405859739069 LENKIVSL 8 Unmodified _LENKIVSL_ 0 0 0 REV__ENSG00000203952|ENST00000695460|CCDC160 REV__ENSG00000203952|ENST00000695460|CCDC160 MSMS AL20221201_MKP_PDAC_01 4 458.280029296875 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 78.521 1 72.345 71.845 72.845 -6.1757 0 0 0 0.2509 1 51399 51399 77.984 10.64 1 + 31425 24129 20672 21081 37237 37237 0.08299242074338053 LENKPVFMF 9 Unmodified _LENKPVFMF_ 0 0 0 nc|ENSG00000255374|P59539|TAS2R45;ENSG00000255374|ENST00000531678|TAS2R43;ENSG00000256436|ENST00000390675|TAS2R31;ENSG00000226761|ENST00000533467|TAS2R46 nc|ENSG00000255374|P59539|TAS2R45 nc|ENSG00000255374|P59539|TAS2R45 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2017822265625 2 562.794078 1123.5736 0.66414 0.00037377 1.9893 0.0011196 2.6534 0.0014933 562.7953243055387 57.164 0.34973 57.164 56.974 57.324 0 34 15 3 0 0 0 0.209 1 31727 31727 3.9444 1.3669 1 5568600 31426 16587 20673 21082 37238 37238 0.016758577480231907 LENLATADDK 10 Unmodified _LENLATADDK_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.820068359375 2 545.274761 1088.53497 1.8606 0.0010145 1.8701 0.0010197 3.7307 0.0020343 545.2753462339371 93.598 0.21955 93.621 93.448 93.667 0.02298 10 8 2 0 0 0 0.22891 1 51954 51954 15.248 2.206 1 799770 + 31427 24588 20674 21083 37239 37239 -0.00575776352820867 LENLAVLEF 9 Unmodified _LENLAVLEF_ 0 0 0 ENST00000539387.5_1_4:140216240-140223649:-|nuORF ENST00000539387.5_1_4:140216240-140223649:-|nuORF ENST00000539387.5_1_4:140216240-140223649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2896728515625 2 524.289682 1046.56481 0.5054 0.00026497 -0.46799 -0.00024536 0.037405 1.9611E-05 524.2895236628184 58.945 0.30643 58.945 58.788 59.095 0 33 13 3 0 0 0 0.07916 1 32799 32799 37.974 5.6685 1 3512600 31428 15020 20675 21084 37240 37240 0.04339207383191024 LENLFFSA 8 Unmodified _LENLFFSA_ 0 0 0 ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7420959472656 2 470.742368 939.470183 0.49964 0.0002352 0.35502 0.00016712 0.85466 0.00040232 470.74237760630183 87.851 0.49426 87.347 87.154 87.649 -0.50423 32 22 2 0 0 0 0.80722 1 48071 48071 2.3027 1.5091 1 580640 31429 5986 20676 21085 37241 37241 -0.001973063681475651 LENLSDIVF 9 Unmodified _LENLSDIVF_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MSMS AL20221201_MKP_PDAC_01 4 525.27978515625 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 57.851 1 51.823 51.323 52.323 -6.0275 0 0 0 0.22437 1 37028 37028 29.082 1.4528 1 + 31430 18469 20677 21086 37242 37242 0.02174617003538515 LENNPDWCC 9 Unmodified _LENNPDWCC_ 0 0 0 ENSG00000169330|ENST00000305428|MINAR1 ENSG00000169330|ENST00000305428|MINAR1 ENSG00000169330|ENST00000305428|MINAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7998657226562 2 547.207509 1092.40047 0.29668 0.00016234 -1.1318 -0.00061934 -0.83515 -0.000457 547.2071336807015 63.469 0.27484 63.469 63.434 63.709 0 19 14 2 0 0 0 0.21564 1 35396 35396 3.9444 0.66309 1 1203500 31431 7865 20678 21087 37243 37243 -0.14203876370720536 LENNTTKEEKI 11 Unmodified _LENNTTKEEKI_ 0 0 0 REV__ENSG00000164221|ENST00000379611|CCDC112 REV__ENSG00000164221|ENST00000379611|CCDC112 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2354431152344 3 440.233146 1317.67761 0.33476 0.00014737 1.9717 0.00086801 2.3065 0.0010154 440.23408347802894 18.073 0.077316 18.079 18.018 18.095 0.0060463 9 5 2 0 0 0 0.71728 1 9146 9146 2.6312 0.37851 1 559760 + 31432 21893 20679 21088 37244 37244 0.031478113185585244 LENNTTKEEKI 11 Unmodified _LENNTTKEEKI_ 0 0 0 REV__ENSG00000164221|ENST00000379611|CCDC112 REV__ENSG00000164221|ENST00000379611|CCDC112 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 440.233146 1317.67761 0.33476 0.00014737 1.9717 0.00086801 2.3065 0.0010154 440.23408347802894 18.073 0.077316 18.079 18.018 18.095 0.0060463 0 0 NaN 2.6312 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 559760 + 31433 21893 20679 21088 0.031478113185585244 LENRLIEL 8 Unmodified _LENRLIEL_ 0 0 0 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 ENSG00000168807|ENST00000336278|SNTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.29443359375 2 500.295299 998.576045 -0.31914 -0.00015967 0.355 0.0001776 0.035856 1.7939E-05 500.2955824541381 48.724 0.34249 48.724 48.531 48.874 0 25 15 2 0 0 0 0.42686 1 26729 26729 41.84 0 1 6000300 31434 7803 20680 21089 37245 37245 0.07670029477333173 LENSLLPSL 9 Unmodified _LENSLLPSL_ 0 0 0 REV__ENSG00000139974|ENST00000267488|SLC38A6 REV__ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2822875976562 2 493.281857 984.549162 0.51247 0.00025279 0.30991 0.00015287 0.82238 0.00040566 493.28184568556054 101.15 0.19977 101.02 100.88 101.08 -0.13293 12 7 2 0 0 0 0.51218 1 55202 55202 6.7232 0 1 805050 + 31435 20442 20681 21090 37246 37246 0.056269208661547054 LENSLLPSL 9 Unmodified _LENSLLPSL_ 0 0 0 REV__ENSG00000139974|ENST00000267488|SLC38A6 REV__ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.281857 984.549162 0.15835 7.811E-05 0.65276 0.00032199 0.81111 0.0004001 493.28213883319705 101 0.17556 101 100.96 101.14 0 -0.0057429 0.00027509 NaN 6.7232 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 398500 + 31436 20442 20681 21090 0.056269208661547054 LENSLLPSL 9 Unmodified _LENSLLPSL_ 0 0 0 REV__ENSG00000139974|ENST00000267488|SLC38A6 REV__ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.281857 984.549162 0.51247 0.00025279 0.30991 0.00015287 0.82238 0.00040566 493.28184568556054 101.15 0.19977 101.02 100.88 101.08 -0.13293 0.0057429 -6.3153E-05 NaN 6.7232 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 805050 + 31437 20442 20681 21090 0.056269208661547054 LENTQSVL 8 Unmodified _LENTQSVL_ 0 0 0 REV__nc|ENSG00000100207|Q9UGU0-2|TCF20 REV__nc|ENSG00000100207|Q9UGU0-2|TCF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2424621582031 2 452.242732 902.470912 -0.078296 -3.5409E-05 -0.26206 -0.00011852 -0.34036 -0.00015393 452.2425599703678 20.722 0.63666 20.722 20.444 21.08 0 141 80 3 0 0 0 0.68937 1 10291 10291 18.146 0 1 4598000 + 31438 18026 20682 21091 37247 37247 0.0157748828091826 LENWDEQWI 9 Unmodified _LENWDEQWI_ 0 0 0 ENST00000494186.1_1_7:99081675-99098383:+|nuORF;ENSG00000198556|ENST00000331410|ZNF789 ENST00000494186.1_1_7:99081675-99098383:+|nuORF ENST00000494186.1_1_7:99081675-99098383:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.2850952148438 2 616.782753 1231.55095 1.2327 0.00076034 -1.8407 -0.0011353 -0.6079 -0.00037494 616.7814892294714 95.701 0.43372 89.525 89.351 89.785 -6.1757 65 26 3 0 0 0 0.23158 1 63344 63344 20.454 2.0805 1 31208000 31439 10106 20683 21092 37248 37248 -0.05556070115903822 LENYKEMY 8 Unmodified _LENYKEMY_ 0 0 0 nc|ENSG00000198300|Q9GZU2-3|PEG3;ENSG00000198300|ENST00000326441|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2492065429688 2 545.2497 1088.48485 NaN NaN NaN NaN NaN NaN NaN 96.626 1 96.322 95.822 96.822 -0.30472 0 0 0 0.97444 1 52768 52768 2.0598 0 1 31440 10074 20684 21093 37249 37249 -0.055856022823036255 LENYLRKEL 9 Unmodified _LENYLRKEL_ 0 0 0 nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2240295410156 3 393.224034 1176.65027 -0.41346 -0.00016258 0.082298 3.2362E-05 -0.33117 -0.00013022 393.224037333905 24.277 0.26859 24.277 24.157 24.426 0 43 17 3 0 0 0 0.42049 1 12371 12371 11.495 0.6952 1 7992200 31441 2080 20685 21094 37250 37250 0.06901372568859188 LENYLRKEL 9 Unmodified _LENYLRKEL_ 0 0 0 nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 393.224034 1176.65027 0.73937 0.00029074 0.13087 5.146E-05 0.87023 0.0003422 393.22403265190434 27.166 0.31012 24.129 23.949 24.259 -3.0365 -0.074175 4.7734E-05 NaN 11.495 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 23951000 31442 2080 20685 21094 0.06901372568859188 LEPAPARLL 9 Unmodified _LEPAPARLL_ 0 0 0 REV__ENSG00000182173|ENST00000333213|TSEN54 REV__ENSG00000182173|ENST00000333213|TSEN54 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.7577514648438 2 490.300384 978.586216 0.22684 0.00011122 2.7725 0.0013593 2.9993 0.0014706 490.30246762268814 56.017 0.51977 50.096 49.84 50.36 -5.9211 48 30 2 0 0 0 0.14225 1 35616 35616 24.021 0 1 25494000 + 31443 23248 20686 21095 37251 37251 0.09606637202557522 LEPARLREAA 10 Unmodified _LEPARLREAA_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3244018554688 2 563.32238 1124.63021 3.8397 0.002163 0.64969 0.00036598 4.4894 0.002529 563.3226978353515 97.959 0.41985 97.941 97.733 98.153 -0.018188 34 14 4 0 0 0 0.29752 1 54412 54412 27.629 0 1 4795800 31444 1133 20687 21096 37252 37252 0.07287621628915986 LEPAVGGP 8 Unmodified _LEPAVGGP_ 0 0 0 ENST00000461007.6_1_X:155253834-155254005:+|nuORF ENST00000461007.6_1_X:155253834-155254005:+|nuORF ENST00000461007.6_1_X:155253834-155254005:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 739.058837890625 1 739.398481 738.391205 -0.057031 -4.2169E-05 0.48534 0.00035886 0.42831 0.00031669 739.3985464523845 72.168 0.32047 72.168 71.986 72.306 0 18 14 2 0 0 0 0.57408 1 40171 40171 28.173 0 1 806350 31445 13649 20688 21097 37253 37253 0.011544663975769254 LEPEEVLKY 9 Unmodified _LEPEEVLKY_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.870361328125 3 373.869257 1118.58594 1.279 0.00047817 0.96891 0.00036225 2.2479 0.00084042 373.869734533884 47.025 0.39264 41.944 41.818 42.211 -5.0805 56 34 2 0 0 0 0.28023 1 29089 29089 12.873 0 1 28654000 31446 1256 20689 21098 37254 37254 0.03139172692044667 LEPEKPLVR 9 Unmodified _LEPEKPLVR_ 0 0 0 ENSG00000119673|ENST00000238651|ACOT2;ENSG00000184227|ENST00000311148|ACOT1 ENSG00000119673|ENST00000238651|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.26806640625 2 540.824224 1079.63389 0.31466 0.00017018 0.10628 5.7481E-05 0.42095 0.00022766 540.8242527454821 86.755 0.30548 86.252 86.115 86.421 -0.50319 19 11 2 0 0 0 0.21473 1 47444 47444 4.3292 0 1 482290 31447 3451 20690 21099 37255 37255 0.09726291402762399 LEPENVPA 8 Unmodified _LEPENVPA_ 0 0 0 REV__ENSG00000163328|ENST00000392552|GPR155 REV__ENSG00000163328|ENST00000392552|GPR155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.4417724609375 1 868.441074 867.433798 0.098321 8.5386E-05 0.03672 3.1889E-05 0.13504 0.00011728 868.4411703224224 72.21 0.27447 72.21 72.032 72.306 0 22 12 2 0 0 0 0.40035 1 40157 40157 44.407 4.4497 1 1817700 + 31448 21748 20691 21100 37256 37256 -0.005221832648544478 LEPFLYFI 8 Unmodified _LEPFLYFI_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MSMS AL20221201_MKP_PDAC_01 4 521.2853393554688 2 521.286411 1040.55827 NaN NaN NaN NaN NaN NaN NaN 88.029 1 81.853 81.353 82.353 -6.1757 0 0 0 0.85111 1 58064 58064 20.871 5.024 1 31449 16193 20692 21101 37257 37257 0.03961314222465262 LEPFQKELY 9 Unmodified _LEPFQKELY_ 0 0 0 nc|ENSG00000173258|Q8TF39-2|ZNF483;ENSG00000173258|ENST00000309235|ZNF483 nc|ENSG00000173258|Q8TF39-2|ZNF483 nc|ENSG00000173258|Q8TF39-2|ZNF483 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5270385742188 3 389.541252 1165.60193 -0.6819 -0.00026563 0.89923 0.00035029 0.21733 8.4659E-05 389.54160943610844 30.61 0.12603 30.61 30.524 30.65 0 8 5 2 0 0 0 0.21473 1 15904 15904 2.4985 0 1 587660 31450 8306 20693 21102 37258 37258 0.025748789289536944 LEPFRDPTLY 10 Unmodified _LEPFRDPTLY_ 0 0 0 REV__ENSG00000170605|ENST00000641329|OR9K2 REV__ENSG00000170605|ENST00000641329|OR9K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.8255615234375 2 625.824421 1249.63429 0.019598 1.2265E-05 0.21751 0.00013612 0.23711 0.00014839 625.8246126804396 65.512 0.29688 65.028 64.898 65.195 -0.48428 33 13 3 0 0 0 0.40136 1 35738 35738 21.537 1.1224 1 8204700 + 31451 22496 20694 21103 37259 37259 0.019456663319488143 LEPFRDPTLY 10 Unmodified _LEPFRDPTLY_ 0 0 0 REV__ENSG00000170605|ENST00000641329|OR9K2 REV__ENSG00000170605|ENST00000641329|OR9K2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 625.824421 1249.63429 0.1589 9.9442E-05 -0.15581 -9.7512E-05 0.0030853 1.9309E-06 625.8243174382188 65.021 0.20766 65.021 64.936 65.143 0 -0.0036808 -0.0003164 NaN 21.537 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1599500 + 31452 22496 20694 21103 0.019456663319488143 LEPFRPEHRRY 11 Unmodified _LEPFRPEHRRY_ 0 0 0 REV__ENSG00000179431|ENST00000317811|FJX1 REV__ENSG00000179431|ENST00000317811|FJX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 750.39892578125 2 750.396941 1498.77933 1.6854 0.0012647 0.32138 0.00024116 2.0068 0.0015059 750.3973621966774 92.502 0.44688 92.532 92.308 92.755 0.030197 42 16 3 0 0 0 0.69316 2 51398 51398;51498 4.897 1.9018 1 48329000 + 31453 23098 20695 21104 37260;37261 37260 0.049891472516492286 LEPGNVKA 8 Unmodified _LEPGNVKA_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2348022460938 2 414.23471 826.454868 -0.88815 -0.0003679 0.69292 0.00028703 -0.19523 -8.0873E-05 414.2351803287486 32.944 0.19785 32.944 32.851 33.049 0 15 9 2 0 0 0 0.76266 1 17255 17255 11.64 0.81637 1 1733600 31454 2210;16099 20696 21105 37262 37262 0.034698268346687655 LEPGSLYIL 9 Unmodified _LEPGSLYIL_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7864074707031 2 502.786776 1003.559 0.22793 0.0001146 -0.18462 -9.2822E-05 0.043319 2.178E-05 502.7863847172685 93.234 2.4612 87.058 86.56 89.021 -6.1757 468 152 5 0 0 0 0.052168 1 62746 62746 44.407 8.3628 1 3891199999.9999995 31455 3868 20697 21106 37263 37263 0.057361088715197184 LEPIHGQKIAE 11 Unmodified _LEPIHGQKIAE_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2326049804688 3 412.231189 1233.67174 0.63316 0.00026101 0.84446 0.00034811 1.4776 0.00060912 412.5657567539163 76.587 1.0258 70.411 69.801 70.827 -6.1757 77 55 2 0 0 0 0.61596 1 50220 50220 10.527 0.21224 1 21366000 + 31456 20848 20698 21107 37264 37264 0.06424757597596908 LEPIVNLLPD 10 Unmodified _LEPIVNLLPD_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8236694335938 2 561.823889 1121.63323 0.70554 0.00039639 -0.25799 -0.00014494 0.44755 0.00025145 561.8237112999557 68.304 0.30647 67.823 67.66 67.967 -0.48071 32 13 3 0 0 0 0.46514 1 37301 37301 18.146 0.011366 1 3411500 31457 5335 20699 21108 37265 37265 0.07727451963046406 LEPLRKSF 8 Unmodified _LEPLRKSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2923583984375 2 495.292559 988.570566 1.0851 0.00053743 -0.84868 -0.00042035 0.23639 0.00011708 495.292084194702 49.65 0.43484 49.602 49.392 49.827 -0.048828 50 21 3 0 0 0 0.42423 2 26799 26799;26912 42.095 10.954 1 28690000 31458 10134 20700 21109 37266;37267 37266 0.07582350685515848 LEPNPRKQQKF 11 Unmodified _LEPNPRKQQKF_ 0 0 0 REV__nc|ENSG00000111206|Q08050-2|FOXM1 REV__nc|ENSG00000111206|Q08050-2|FOXM1 MSMS AL20221201_MKP_PDAC_01 4 692.8900146484375 2 692.888418 1383.76228 NaN NaN NaN NaN NaN NaN NaN 101.39 1 95.218 94.718 95.718 -6.1757 0 0 0 0.88164 1 68024 68024 8.1555 1.4324 1 + 31459 29567 20701 21110 37268 37268 0.08575226645825751 LEPPRHPGI 9 Unmodified _LEPPRHPGI_ 0 0 0 REV__nc|ENSG00000197408|P20813-2|CYP2B6 REV__nc|ENSG00000197408|P20813-2|CYP2B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2884216308594 2 508.287808 1014.56106 0.51579 0.00026217 -0.21339 -0.00010846 0.3024 0.00015371 508.28765358597065 49.912 0.51367 49.52 49.277 49.791 -0.3923 94 25 5 0 0 0 0.43463 1 26979 26979 10.824 0 1 214250000 + 31460 23923 20702 21111 37269 37269 0.05436582400000134 LEPSPPQCDY 10 Unmodified _LEPSPPQCDY_ 0 0 0 ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF ENSG00000158092|ENST00000481752|NCK1 ENSG00000158092|ENST00000481752|NCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8684387207031 3 383.502468 1147.48558 0.66001 0.00025312 0.4566 0.00017511 1.1166 0.00042822 383.50265911086103 51.269 0.26024 51.269 51.132 51.393 0 23 11 3 0 0 0 0.66569 1 28234 28234 3.5871 0.95582 1 2549900 31461 6564 20703 21112 37270 37270 -0.08226807633263888 LEPVDFYAAY 10 Unmodified _LEPVDFYAAY_ 0 0 0 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.52587890625 3 396.52549 1186.55464 0.15117 5.9941E-05 -0.33321 -0.00013213 -0.18204 -7.2185E-05 396.52531446471994 59.235 0.33206 59.235 59.068 59.4 0 37 13 4 0 0 0 0.60623 1 32959 32959 6.1918 0.40842 1 18499000 + 31462 29586 20704 21113 37271 37271 -0.03117400342057408 LEPWGWTDCRC 11 Unmodified _LEPWGWTDCRC_ 0 0 0 ENST00000547698.5_1_12:49491303-49494191:-|nuORF ENST00000547698.5_1_12:49491303-49494191:-|nuORF ENST00000547698.5_1_12:49491303-49494191:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.5284729003906 3 455.862002 1364.56418 NaN NaN NaN NaN NaN NaN NaN 14.792 1 14.761 14.261 15.261 -0.030868 0 0 0 0.94301 1 7220 7220 0.094841 0 1 31463 15125 20705 21114 37272 37272 -0.10352278599793863 LEPWLAFY 8 Unmodified _LEPWLAFY_ 0 0 0 REV__ENST00000447443.1_1_16:58549735-58552314:+|nuORF REV__ENST00000447443.1_1_16:58549735-58552314:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3024291992188 2 519.768386 1037.52222 0.21299 0.00011071 -0.16431 -8.5401E-05 0.048685 2.5305E-05 519.768251833945 63.496 0.50299 63.01 62.771 63.274 -0.48617 42 19 3 0 0 0 8.7369 1 34716 34716 5.2307 0 1 9826800 + 31464 18278 20706 21115 37273 37273 0.004958570456210509 LEPWRSGADQL 11 Unmodified _LEPWRSGADQL_ 0 0 0 REV__nc|ENSG00000126106|Q6P2H8-2|TMEM53 REV__nc|ENSG00000126106|Q6P2H8-2|TMEM53 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 635.8800659179688 2 636.322576 1270.6306 1.1747 0.00074746 2.0768 0.0013215 3.2515 0.002069 636.323836534499 98.11 0.090668 91.934 91.862 91.952 -6.1757 6 5 2 0 0 0 0.28456 1 65046 65046 11.495 0.6952 1 8595200 + 31465 19539 20707 21116 37274 37274 0.006109965581117649 LEPYFDFII 9 Unmodified _LEPYFDFII_ 0 0 0 ENST00000493751.1_1_3:39144409-39149053:-|nuORF;ENST00000493938.5_1_3:39144529-39149032:-|nuORF;ENST00000469471.1_1_3:39144861-39149032:-|nuORF;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000493851.5_1_3:39143979-39149053:-|nuORF;nc|ENSG00000114745|Q9BQQ3-2|GORASP1;ENST00000441302.6_1_3:39142056-39149053:-|nuORF;ENSG00000114745|ENST00000319283|GORASP1 ENST00000493751.1_1_3:39144409-39149053:-|nuORF ENST00000493751.1_1_3:39144409-39149053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.801513671875 2 578.799883 1155.58521 -0.27851 -0.0001612 2.5109 0.0014533 2.2324 0.0012921 578.8012622806235 101.36 0.079453 101.32 101.27 101.35 -0.04216 4 2 2 0 0 0 0.51218 1 56327 56327 6.7232 0.99131 1 7820100 31466 3058 20708 21117 37275 37275 0.013643780429902108 LEPYFDFII 9 Unmodified _LEPYFDFII_ 0 0 0 ENST00000493751.1_1_3:39144409-39149053:-|nuORF;ENST00000493938.5_1_3:39144529-39149032:-|nuORF;ENST00000469471.1_1_3:39144861-39149032:-|nuORF;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000493851.5_1_3:39143979-39149053:-|nuORF;nc|ENSG00000114745|Q9BQQ3-2|GORASP1;ENST00000441302.6_1_3:39142056-39149053:-|nuORF;ENSG00000114745|ENST00000319283|GORASP1 ENST00000493751.1_1_3:39144409-39149053:-|nuORF ENST00000493751.1_1_3:39144409-39149053:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 578.799883 1155.58521 0.37293 0.00021585 -0.052432 -3.0348E-05 0.3205 0.00018551 579.3015001996131 101.38 0.066101 101.24 101.2 101.26 -0.13293 -0.037027 -0.002327 NaN 6.7232 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 276440 31467 3058 20708 21117 0.013643780429902108 LEQADLILA 9 Unmodified _LEQADLILA_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2818908691406 2 493.281857 984.549162 0.18922 9.3337E-05 0.6291 0.00031032 0.81831 0.00040366 493.28213669956295 99.002 0.30172 92.827 92.689 92.99 -6.1757 32 19 2 0 0 0 0.024882 1 65735 65735 58.679 6.4105 1 60161000 31468 4198 20709 21118 37276 37276 0.05626920866143337 LEQALQEMST 10 Unmodified _LEQALQEMST_ 0 0 0 REV__nc|ENSG00000155066|Q8N271-3|PROM2 REV__nc|ENSG00000155066|Q8N271-3|PROM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.27783203125 2 575.276446 1148.53834 0.067828 3.902E-05 2.2668 0.001304 2.3346 0.001343 575.2773608515574 56.861 0.3707 56.376 56.153 56.523 -0.48554 38 17 3 0 0 0 0.1942 1 30876 30876 34.402 2.0962 1 4783900 + 31469 21256 20710 21119 37277 37277 -0.029988495704628804 LEQALQEMST 10 Unmodified _LEQALQEMST_ 0 0 0 REV__nc|ENSG00000155066|Q8N271-3|PROM2 REV__nc|ENSG00000155066|Q8N271-3|PROM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3128051757812 2 575.276446 1148.53834 0.067828 3.902E-05 2.2668 0.001304 2.3346 0.001343 575.2773608515574 56.861 0.3707 56.376 56.153 56.523 -0.48554 38 17 3 0 0 0 0.21193 1 30868 30868 27.629 2.2295 1 4783900 + 31470 21256 20710 21119 37278 37278 -0.029988495704628804 LEQDGIENSRD 11 Unmodified _LEQDGIENSRD_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MSMS AL20221201_MKP_PDAC_01 4 638.2962646484375 2 638.294213 1274.57387 NaN NaN NaN NaN NaN NaN NaN 54.971 1 49.106 48.606 49.606 -5.8653 0 0 0 0.66488 1 34934 34934 18.373 3.1246 1 31471 5924 20711 21120 37279 37279 -0.05243095789091967 LEQEGKPFR 9 Unmodified _LEQEGKPFR_ 0 0 0 REV__ENSG00000113555|ENST00000231484|PCDH12 REV__ENSG00000113555|ENST00000231484|PCDH12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.29638671875 2 552.29583 1102.57711 0.86311 0.00047669 0.80595 0.00044512 1.6691 0.00092181 552.2959696032235 30.306 0.37987 26.809 26.612 26.992 -3.497 43 18 3 0 0 0 0.20428 1 17147 17147 22.736 1.1993 1 91597000 + 31472 18874 20712 21121 37280 37280 0.029922438462335776 LEQELHKW 8 Unmodified _LEQELHKW_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7578125 2 541.785099 1081.55564 -0.16766 -9.0836E-05 -3.6583 -0.001982 -3.826 -0.0020729 541.7838579115087 56.938 0.12934 56.452 56.349 56.479 -0.48554 7 5 2 0 0 0 8.7369 1 30940 30940 7.9102 0 1 833540 31473 9594 20713 21122 37281 37281 0.01812858817538654 LEQETGERSC 10 Unmodified _LEQETGERSC_ 0 0 0 ENST00000513313.5_1_4:189321940-189407012:+|nuORF;ENST00000512839.5_1_4:189321940-189398812:+|nuORF ENST00000513313.5_1_4:189321940-189407012:+|nuORF ENST00000513313.5_1_4:189321940-189407012:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2354431152344 3 384.50476 1150.49245 0.20957 8.0581E-05 1.7758 0.00068281 1.9854 0.00076339 384.83969294584364 73.534 0.32919 73.578 73.405 73.734 0.043983 23 14 2 0 0 0 0.23991 1 40546 40546 0.62683 0.50396 1 2327500 31474 14626 20714 21123 37282 37282 -0.076774947526701 LEQETGERSC 10 Unmodified _LEQETGERSC_ 0 0 0 ENST00000513313.5_1_4:189321940-189407012:+|nuORF;ENST00000512839.5_1_4:189321940-189398812:+|nuORF ENST00000513313.5_1_4:189321940-189407012:+|nuORF ENST00000513313.5_1_4:189321940-189407012:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 384.50476 1150.49245 0.71432 0.00027466 1.3383 0.00051458 2.0526 0.00078924 384.8390024443674 74.088 0.26576 73.612 73.448 73.714 -0.47588 0.016909 -0.00031616 NaN 0.62683 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 953290 31475 14626 20714 21123 -0.076774947526701 LEQEVGLW 8 Unmodified _LEQEVGLW_ 0 0 0 ENST00000413332.5_1_1:3816970-3817033:+|nuORF ENST00000413332.5_1_1:3816970-3817033:+|nuORF ENST00000413332.5_1_1:3816970-3817033:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.50439453125 1 973.498923 972.491647 0.44154 0.00042983 3.7561 0.0036565 4.1976 0.0040864 973.5019123141202 73.065 0.22082 73.065 72.905 73.126 0 14 9 2 0 0 0 0.75262 1 40640 40640 12.532 4.6214 1 466190 31476 12997 20715 21124 37283 37283 0.004300786605767826 LEQGCLVVY 9 Unmodified _LEQGCLVVY_ 0 0 0 nc|ENSG00000112038|P35372-3|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2608032226562 2 512.26261 1022.51067 0.24266 0.00012431 3.806 0.0019497 4.0486 0.002074 512.2614925182866 45.615 0.68125 45.615 45.363 46.044 0 52 35 3 0 0 0 0.10734 2 24824 24824;24934 32.305 3.1841 1 7126600 31477 16122 20716 21125 37284;37285 37284 0.00031291959987811424 LEQGPSSHYY 10 Unmodified _LEQGPSSHYY_ 0 0 0 ENSG00000171840|ENST00000305108|NINJ2 ENSG00000171840|ENST00000305108|NINJ2 ENSG00000171840|ENST00000305108|NINJ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.7911987304688 2 590.767103 1179.51965 NaN NaN NaN NaN NaN NaN NaN 73.953 1 73.477 72.977 73.977 -0.47588 0 0 0 0.97592 1 40475 40475 3.2813 0.70383 1 31478 8149 20717 21126 37286 37286 -0.06292643150004551 LEQIVIDL 8 Unmodified _LEQIVIDL_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14;REV__ENST00000474645.6_1_6:86215687-86217871:-|nuORF REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7794189453125 2 471.778951 941.543348 0.32433 0.00015301 0.3521 0.00016611 0.67642 0.00031912 471.77907821054384 81.419 0.39578 81.419 81.217 81.613 0 38 17 3 0 0 0 0.58902 1 45127 45127 26.884 3.7352 1 2222900 + 31479 20051;27566 20718 21127 37287 37287 0.070238223544834 LEQIVIDL 8 Unmodified _LEQIVIDL_ 0 0 0 REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14;REV__ENST00000474645.6_1_6:86215687-86217871:-|nuORF REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7806091308594 2 471.778951 941.543348 0.74486 0.00035141 0.52745 0.00024884 1.2723 0.00060025 471.779174365361 81.908 0.39626 81.413 81.21 81.606 -0.4952 33 14 3 0 0 0 0.78031 1 44928 44928 10.074 2.7847 1 1916500 + 31480 20051;27566 20718 21127 37288 37288 0.070238223544834 LEQKYVQLF 9 Unmodified _LEQKYVQLF_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000214929|ENST00000344803|SPATA31D1 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.32470703125 2 584.324057 1166.63356 0.73001 0.00042656 0.82968 0.0004848 1.5597 0.00091137 584.3240029010049 84.292 0.52235 78.116 77.72 78.242 -6.1757 51 28 2 0 0 0 0.009483 1 55291 55291 81.89 3.1622 1 12986000 31481 9504 20719 21128 37289 37289 0.05690871682895704 LEQLGIVY 8 Unmodified _LEQLGIVY_ 0 0 0 REV__ENSG00000132376|ENST00000421807|INPP5K REV__ENSG00000132376|ENST00000421807|INPP5K MSMS AL20221201_MKP_PDAC_01 4 467.7648010253906 2 467.765843 933.517133 NaN NaN NaN NaN NaN NaN NaN 82.249 1 76.074 75.574 76.574 -6.1757 0 0 0 0.47897 1 54019 54019 42.095 3.9434 1 + 31482 19847 20720 21129 37290 37290 0.04771553183002197 LEQLLLTV 8 Unmodified _LEQLLLTV_ 0 0 0 REV__ENSG00000138593|ENST00000559471|SECISBP2L REV__ENSG00000138593|ENST00000559471|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4921875 1 928.57136 927.564084 0.087913 8.1633E-05 -1.6846 -0.0015642 -1.5967 -0.0014826 928.5709289943533 76.378 0.096878 75.898 75.812 75.909 -0.47945 5 3 2 0 0 0 0.80383 1 41785 41785 4.3292 0 1 439790 + 31483 20338 20721 21130 37291 37291 0.09740412734129222 LEQLLSAL 8 Unmodified _LEQLLSAL_ 0 0 0 REV__ENSG00000128564|ENST00000249330|VGF REV__ENSG00000128564|ENST00000249330|VGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7662658691406 2 443.765843 885.517133 NaN NaN NaN NaN NaN NaN NaN 69.308 1 69.308 68.808 69.808 0 0 0 0 0.95607 1 38617 38617 9.3474 0 1 + 31484 19615 20722 21131 37292 37292 0.06979553183009557 LEQLQLPTF 9 Unmodified _LEQLQLPTF_ 0 0 0 REV__ENSG00000203989|ENST00000371402|RHOXF2B REV__ENSG00000203989|ENST00000371402|RHOXF2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.305419921875 2 544.802957 1087.59136 0.33792 0.0001841 0.2839 0.00015467 0.62183 0.00033877 544.8031286611051 82.725 0.30408 82.228 82.053 82.357 -0.49751 18 12 2 0 0 0 0.5029 1 45286 45286 7.2892 0.56607 1 844650 + 31485 19806 20723 21132 37293 37293 0.05106896274492101 LEQLTVNLF 9 Unmodified _LEQLTVNLF_ 0 0 0 ENST00000419303.5_1_22:22348995-22398182:-|nuORF ENST00000419303.5_1_22:22348995-22398182:-|nuORF ENST00000419303.5_1_22:22348995-22398182:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3283081054688 2 538.802957 1075.59136 4.174 0.002249 0.041683 2.2459E-05 4.2157 0.0022714 538.8031564001168 98.884 0.20204 98.856 98.718 98.92 -0.028282 10 6 2 0 0 0 0.21367 1 54881 54881 2.0598 0 1 1528700 31486 13086 20724 21133 37294 37294 0.05658896274530889 LEQNHSLK 8 Unmodified _LEQNHSLK_ 0 0 0 ENSG00000159753|ENST00000334583|CARMIL2;nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENST00000602321.5_1_16:67683742-67683967:+|nuORF ENSG00000159753|ENST00000334583|CARMIL2 ENSG00000159753|ENST00000334583|CARMIL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7619323730469 2 484.761623 967.508694 NaN NaN NaN NaN NaN NaN NaN 28.469 1 28.469 27.969 28.969 0 0 0 0 0.7268 1 14706 14706 26.884 0 1 31487 6672 20725 21134 37295 37295 0.02363999266378869 LEQPQTRL 8 Unmodified _LEQPQTRL_ 0 0 0 REV__ENST00000476175.6_1_14:23389776-23390106:-|nuORF REV__ENST00000476175.6_1_14:23389776-23390106:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7485656738281 2 492.777274 983.539994 0.53295 0.00026263 -1.5643 -0.00077083 -1.0313 -0.0005082 492.77665171371586 36.325 0.19974 36.325 36.249 36.448 0 16 9 2 0 0 0 8.7369 1 19247 19247 11.64 0 1 3253800 + 31488 27591 20726 21135 37296 37296 0.04756572300470907 LEQPTDPV 8 Unmodified _LEQPTDPV_ 0 0 0 ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1 ENST00000522955.5_1_8:38663104-38684943:+|nuORF ENST00000522955.5_1_8:38663104-38684943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.44921875 1 898.451639 897.444362 -0.0036045 -3.2384E-06 -1.0822 -0.00097227 -1.0858 -0.00097551 898.4500604837151 62.476 0.19781 62.476 62.391 62.589 0 19 12 2 0 0 0 0.12393 1 34851 34851 92.822 0 1 3241500 31489 5857 20727 21136 37297 37297 -0.008462006104309694 LEQQEHFFV 9 Unmodified _LEQQEHFFV_ 0 0 0 nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV;ENST00000570511.5_1_16:3293693-3304184:-|nuORF nc|ENSG00000103313|O15553-3|MEFV nc|ENSG00000103313|O15553-3|MEFV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.7901000976562 2 588.787838 1175.56112 2.4475 0.0014411 1.8946 0.0011155 4.3421 0.0025566 588.7888450646665 96.616 0.383 96.609 96.416 96.799 -0.007019 28 13 3 0 0 0 0.2143 1 53687 53687 21.747 3.6117 1 2357900 31490 2125 20728 21137 37298 37298 -0.019634623906767956 LEQQMLNKE 9 Unmodified _LEQQMLNKE_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7880249023438 2 566.786981 1131.55941 1.3629 0.00077246 0.54252 0.00030749 1.9054 0.00108 566.7873469898909 97.1 0.40607 90.925 90.693 91.099 -6.1757 54 23 3 0 0 0 0.26811 1 64385 64385 24.991 6.8446 1 24872000 + 31491 22318 20729 21138 37299 37299 -0.0011083947094903124 LEQQSPTI 8 Unmodified _LEQQSPTI_ 0 0 0 ENST00000418635.6_1_6:35393953-35394385:+|nuORF ENST00000418635.6_1_6:35393953-35394385:+|nuORF ENST00000418635.6_1_6:35393953-35394385:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.243408203125 2 458.242732 914.470912 NaN NaN NaN NaN NaN NaN NaN 77.027 1 77.027 76.527 77.527 0 0 0 0 0.97444 1 42822 42822 5.2307 0 1 31492 13072 20730 21139 37300 37300 0.010254882809135779 LEQSLQPGL 9 Unmodified _LEQSLQPGL_ 0 0 0 ENSG00000184492|ENST00000306507|FOXD4L1;ENSG00000204779|ENST00000377420|FOXD4L5;ENSG00000184659|ENST00000377413|FOXD4L4;ENSG00000273514|ENST00000622588|FOXD4L6;ENSG00000187559|ENST00000342833|FOXD4L3;ENSG00000170122|ENST00000382500|FOXD4 ENSG00000184492|ENST00000306507|FOXD4L1 ENSG00000184492|ENST00000306507|FOXD4L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7380065917969 2 492.771657 983.528761 0.12918 6.3658E-05 0.16299 8.0314E-05 0.29217 0.00014397 492.77149224999533 62.738 0.21204 62.738 62.611 62.823 0 11 8 2 0 0 0 0.19205 1 35002 35002 14.838 2.3067 1 755970 31493 7951 20731 21140 37301 37301 0.03633750206347486 LEQVDPLDKL 10 Unmodified _LEQVDPLDKL_ 0 0 0 REV__nc|ENSG00000167881|Q9UHB9-3|SRP68 REV__nc|ENSG00000167881|Q9UHB9-3|SRP68 MSMS AL20221201_MKP_PDAC_01 4 585.3233642578125 2 585.324254 1168.63395 NaN NaN NaN NaN NaN NaN NaN 85.285 1 79.11 78.61 79.61 -6.1757 0 0 0 0.59691 1 56159 56159 21.537 3.3906 1 + 31494 22260 20732 21141 37302 37302 0.05638246612079456 LEQYEGPGF 9 Unmodified _LEQYEGPGF_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.7681274414062 2 520.24019 1038.46583 1.0974 0.00057089 0.52574 0.00027351 1.6231 0.00084441 520.2411331300186 68.855 0.55647 62.68 62.439 62.995 -6.1757 54 30 3 0 0 0 0.17718 1 44884 44884 14.838 8.6325 1 21988000 31495 16604 20733 21142 37303 37303 -0.051868155817146544 LEQYFYSF 8 Unmodified _LEQYFYSF_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6;CHD6|p.A1504D|1|0.19|ENSG00000124177|chr20:41423536-41423536|G/T|missense_variant ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.750732421875 2 548.752933 1095.49131 0.17423 9.5607E-05 -3.7106 -0.0020362 -3.5364 -0.0019406 548.750694714486 70.164 0.15732 70.164 70.122 70.28 0 9 7 2 0 0 0 0.80232 1 39110 39110 5.2307 0.47466 1 590390 31496 3755 20734 21143 37304 37304 -0.052613410592812215 LEQYIPSRPLK 11 Unmodified _LEQYIPSRPLK_ 0 0 0 ENSG00000100288|ENST00000406938|CHKB;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENST00000492556.5_1_22:51018168-51020414:-|nuORF ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.3883666992188 2 672.387719 1342.76089 0.61603 0.00041421 -0.095496 -6.421E-05 0.52054 0.00035 672.3875936608604 78.509 0.44943 78.561 78.302 78.752 0.052444 71 18 5 0 0 0 0.61059 1 43265 43265 10.8 3.1906 1 97330000 31497 1784 20735 21144 37305 37305 0.10321592557079384 LERDPRLLL 9 Unmodified _LERDPRLLL_ 0 0 0 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.84375 2 562.842948 1123.67134 1.1004 0.00061936 -0.34904 -0.00019645 0.75137 0.0004229 562.8428287921637 38.223 0.19841 33.854 33.671 33.87 -4.3689 13 11 2 0 0 0 0.11005 1 22492 22492 34.402 0 1 10239000 + 31498 22131 20736 21145 37306 37306 0.11445382668398452 LERGPNRI 8 Unmodified _LERGPNRI_ 0 0 0 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7768859863281 2 477.777608 953.540663 -0.11329 -5.4126E-05 -0.35204 -0.0001682 -0.46533 -0.00022233 477.77714641527257 25.622 0.25312 22.738 22.586 22.84 -2.8831 21 13 2 0 0 0 0.75262 1 14035 14035 12.532 0.89125 1 5760700 31499 8965 20737 21146 37307 37307 0.06203411740193587 LERGPNRI 8 Unmodified _LERGPNRI_ 0 0 0 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 477.777608 953.540663 -0.15761 -7.5304E-05 0.56148 0.00026826 0.40387 0.00019296 477.77789969584245 22.546 0.14634 22.546 22.444 22.59 0 -0.096091 0.00043506 NaN 12.532 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 414490 31500 8965 20737 21146 0.06203411740193587 LERKDLEL 8 Unmodified _LERKDLEL_ 0 0 0 ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENST00000354752.5_1_9:99942307-99949763:-|nuORF ENSG00000230453|ENST00000684830|ANKRD18B ENSG00000230453|ENST00000684830|ANKRD18B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.293212890625 2 508.292756 1014.57096 0.91095 0.00046303 -0.61923 -0.00031475 0.29172 0.00014828 508.2924566495492 46.374 0.42075 46.374 46.164 46.585 0 58 19 4 0 0 0 0.58902 1 25414 25414 26.884 0 1 35157000 31501 10615 20738 21147 37308 37308 0.06425725614712974 LERKFGEII 9 Unmodified _LERKFGEII_ 0 0 0 REV__ENSG00000164978|ENST00000379158|NUDT2 REV__ENSG00000164978|ENST00000379158|NUDT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8245239257812 2 552.824224 1103.63389 0.56097 0.00031012 -0.017866 -9.8768E-06 0.5431 0.00030024 552.8241273023738 55.394 0.35852 54.916 54.733 55.091 -0.47798 52 16 4 0 0 0 0.07916 1 30108 30108 37.974 1.4678 1 36778000 + 31502 21971 20739 21148 37309 37309 0.08622291402775772 LERKVKHLTQ 10 Unmodified _LERKVKHLTQ_ 0 0 0 REV__ENSG00000258890|ENST00000556440|CEP95 REV__ENSG00000258890|ENST00000556440|CEP95 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3794555664062 2 626.380229 1250.7459 0.78933 0.00049442 -1.2222 -0.00076553 -0.43282 -0.00027111 626.3793205280283 101.31 0.18476 95.134 95.046 95.231 -6.1757 21 10 3 0 0 0 0.71177 1 67939 67939 3.2813 0.97858 1 51840000 + 31503 24570 20740 21149 37310 37310 0.13056145479754377 LERLDSDW 8 Unmodified _LERLDSDW_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.771728515625 2 517.251089 1032.48762 1.3291 0.00068746 -3.1751 -0.0016423 -1.846 -0.00095484 517.2498689880075 49.581 0.047985 44.042 44.017 44.065 -5.5391 4 2 2 0 0 0 8.7369 1 30990 30990 8.5933 3.8373 1 16105000 31504 2666 20741 21150 37311 37311 -0.0273201083314234 LERLIKLGRR 10 Unmodified _LERLIKLGRR_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MSMS AL20221201_MKP_PDAC_01 4 627.4132080078125 2 627.411863 1252.80917 NaN NaN NaN NaN NaN NaN NaN 102.99 1 96.812 96.312 97.312 -6.1757 0 0 0 1.0024 1 69080 69080 0.40072 0 1 31505 8173 20742 21151 37312 37312 0.19288130987638397 LERLRPPRL 9 Unmodified _LERLRPPRL_ 0 0 0 REV__ENST00000345097.8_1_14:89626539-89626743:-|nuORF REV__ENST00000345097.8_1_14:89626539-89626743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.8213500976562 2 575.364382 1148.71421 NaN NaN NaN NaN NaN NaN NaN 69.406 1 69.406 68.906 69.906 0 0 0 0 0.84564 1 38670 38670 2.0598 0 1 + 31506 25752 20743 21152 37313 37313 0.14580197516465887 LERMISSFL 9 Unmodified _LERMISSFL_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8663635253906 3 365.867082 1094.57942 0.80697 0.00029524 -0.90266 -0.00033025 -0.095689 -3.501E-05 365.8667077279888 13.104 0.12154 10.622 10.566 10.687 -2.482 69 51 2 0 0 0 0.55775 1 6669 6669 2.2828 0 1 949140 + 31507 17004 20744 21153 37314 37314 0.03590956259699851 LERPDDEFLY 10 Unmodified _LERPDDEFLY_ 0 0 0 REV__ENST00000483222.5_1_22:50687938-50689256:-|nuORF REV__ENST00000483222.5_1_22:50687938-50689256:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8092651367188 2 648.808968 1295.60338 0.3154 0.00020463 0.14852 9.6359E-05 0.46391 0.00030099 648.808687913099 73.156 0.28564 73.156 72.985 73.271 0 18 12 2 0 0 0 0.66569 1 40709 40709 6.7232 0 1 764610 + 31508 27738 20745 21154 37315 37315 -0.032595317729374074 LERQQQWI 8 Unmodified _LERQQQWI_ 0 0 0 REV__nc|ENSG00000038358|Q6P2E9-2|EDC4 REV__nc|ENSG00000038358|Q6P2E9-2|EDC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7954711914062 2 550.795998 1099.57744 NaN NaN NaN NaN NaN NaN NaN 80.002 1 80.002 79.502 80.502 0 0 0 0 0.97348 1 44427 44427 5.7604 0 1 + 31509 17178 20746 21155 37316 37316 0.03163663566078867 LERQSMRTF 9 Unmodified _LERQSMRTF_ 0 0 0 REV__ENST00000459686.5_1_17:27944343-27944613:-|nuORF REV__ENST00000459686.5_1_17:27944343-27944613:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 584.302001953125 2 584.30059 1166.58663 NaN NaN NaN NaN NaN NaN NaN 91.983 1 85.808 85.308 86.308 -6.1757 0 0 0 0.7453 1 60815 60815 7.9102 0.3012 1 + 31510 22218 20747 21156 37317 37317 0.009996888601108367 LERRREAF 8 Unmodified _LERRREAF_ 0 0 0 ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF ENSG00000110756|ENST00000349215|HPS5 ENSG00000110756|ENST00000349215|HPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.750244140625 2 538.801614 1075.58868 0.23587 0.00012709 0.92043 0.00049593 1.1563 0.00062302 538.802204725145 64.017 0.26775 64.017 63.879 64.147 0 18 10 2 0 0 0 0.80676 1 35644 35644 2.5775 0 1 1309000 31511 2739 20748 21157 37318 37318 0.05390485660223021 LERRRILEV 9 Unmodified _LERRRILEV_ 0 0 0 nc|ENSG00000120647|Q9BR77-2|CCDC77;ENSG00000120647|ENST00000239830|CCDC77 nc|ENSG00000120647|Q9BR77-2|CCDC77 nc|ENSG00000120647|Q9BR77-2|CCDC77 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3677978515625 2 592.367121 1182.71969 -0.2016 -0.00011942 2.1531 0.0012754 1.9515 0.001156 592.3683512529776 78.457 0.22879 77.971 77.911 78.139 -0.48596 16 10 2 0 0 0 0.31356 1 42975 42975 22.736 4.3632 1 1061200 31512 3525 20749 21158 37319 37319 0.13563876308285217 LERRWEAI 8 Unmodified _LERRWEAI_ 0 0 0 ENSG00000151320|ENST00000280979|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7991943359375 2 536.79854 1071.58253 0.2679 0.00014381 1.1252 0.00060401 1.3931 0.00074782 536.7988603778622 84.6 0.25436 84.6 84.465 84.719 0 16 11 2 0 0 0 0.80676 1 46943 46943 2.5775 0 1 336750 31513 6103 20750 21159 37320 37320 0.04959967428703749 LERSLKNL 8 Unmodified _LERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 486.7957458496094 2 486.795466 971.57638 NaN NaN NaN NaN NaN NaN NaN 34.485 1 30.39 29.89 30.89 -4.0951 0 0 0 0.44388 1 19888 19888 47.594 3.822 1 31514 6130 20751 21160 37321 37321 0.08945449197187827 LERTAWRRF 9 Unmodified _LERTAWRRF_ 0 0 0 REV__nc|ENSG00000182253|O15061-2|SYNM REV__nc|ENSG00000182253|O15061-2|SYNM MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5652770996094 3 412.231634 1233.67307 0.63316 0.00026101 -0.23697 -9.7688E-05 0.39618 0.00016332 412.5657567539163 76.587 1.0258 70.411 69.801 70.827 -6.1757 77 55 2 0 0 0 0.2546 2 50096 49959;50096 19.362 0.64072 1 21366000 + 31515 23254 20752 21161 37322;37323 37323 0.06558436476962015 LERTLRVL 8 Unmodified _LERTLRVL_ 0 0 0 nc|ENSG00000122787|P51857-3|AKR1D1;nc|ENSG00000122787|P51857-2|AKR1D1;ENSG00000122787|ENST00000242375|AKR1D1 nc|ENSG00000122787|P51857-3|AKR1D1 nc|ENSG00000122787|P51857-3|AKR1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3199462890625 2 500.319109 998.623664 1.3816 0.00069124 1.8044 0.00090276 3.186 0.001594 500.3200524021367 102.69 0.17799 96.518 96.413 96.591 -6.1757 81 41 3 0 0 0 0.80722 1 68891 68891 2.3027 0 1 7728200 31516 3663 20753 21162 37324 37324 0.12429728468202939 LERVRSELK 9 Unmodified _LERVRSELK_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15 REV__ENSG00000144821|ENST00000693548|MYH15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2304077148438 3 377.227779 1128.66151 0.75661 0.00028541 1.006 0.00037947 1.7626 0.00066489 377.22824402991904 22.847 0.32993 20.069 19.887 20.217 -2.7784 52 24 3 0 0 0 0.20507 1 12367 12367 22.658 4.285 1 21081000 + 31517 20738 20754 21163 37325 37325 0.10232194662989968 LERYHQVRPYY 11 Unmodified _LERYHQVRPYY_ 0 0 0 REV__nc|ENSG00000104381|Q8TB36-2|GDAP1 REV__nc|ENSG00000104381|Q8TB36-2|GDAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 762.8916625976562 2 762.391325 1522.7681 0.89906 0.00068544 -0.80586 -0.00061438 0.093205 7.1059E-05 762.3905226698396 73.296 0.63547 67.12 66.734 67.369 -6.1757 53 30 2 0 0 0 0.62338 1 48044 48044 10.151 2.5416 1 17901000 + 31518 18355 20755 21164 37326 37326 0.027623251575278118 LERYNGEN 8 Unmodified _LERYNGEN_ 0 0 0 REV__ENSG00000172890|ENST00000319023|NADSYN1 REV__ENSG00000172890|ENST00000319023|NADSYN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7832946777344 2 497.733063 993.451573 0.65641 0.00032672 -2.7149 -0.0013513 -2.0584 -0.0010246 497.7320146769762 38.415 0.078613 34.046 33.98 34.058 -4.3689 5 4 2 0 0 0 8.7369 1 22645 22645 21.747 3.6117 1 2745400 + 31519 22684 20756 21165 37327 37327 -0.04541468009995242 LERYQRITFH 10 Unmodified _LERYQRITFH_ 0 0 0 REV__nc|ENSG00000169744|O43679-3|LDB2 REV__nc|ENSG00000169744|O43679-3|LDB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.913818359375 3 454.914083 1361.72042 0.6074 0.00027631 0.11166 5.0798E-05 0.71906 0.00032711 454.91418183669435 78.131 1.0395 71.955 71.428 72.468 -6.1757 92 61 2 0 0 0 0.56707 1 51299 51299 12.856 3.0917 1 50630000 + 31520 22422 20757 21166 37328 37328 0.0540267095730087 LESAEDIFW 9 Unmodified _LESAEDIFW_ 0 0 0 nc|ENSG00000163378|Q5NDL2-2|EOGT;nc|ENSG00000163378|Q5NDL2-3|EOGT;ENSG00000163378|ENST00000383701|EOGT nc|ENSG00000163378|Q5NDL2-2|EOGT nc|ENSG00000163378|Q5NDL2-2|EOGT MSMS AL20221201_MKP_PDAC_01 4 555.2590942382812 2 555.261122 1108.50769 NaN NaN NaN NaN NaN NaN NaN 81.241 1 75.066 74.566 75.566 -6.1757 0 0 0 0.50124 1 53318 53318 15.847 1.9411 1 31521 6986 20758 21167 37329 37329 -0.04222259893185765 LESAFADTL 9 Unmodified _LESAFADTL_ 0 0 0 ENSG00000214357|ENST00000369800|NEURL1B ENSG00000214357|ENST00000369800|NEURL1B ENSG00000214357|ENST00000369800|NEURL1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7426147460938 2 483.742565 965.470577 0.67154 0.00032485 0.22367 0.0001082 0.89521 0.00043305 483.742791846848 73.559 0.27364 73.559 73.44 73.713 0 22 12 2 0 0 0 0.41742 1 40926 40926 11.64 1.4569 1 856130 31522 10489 20759 21168 37330 37330 -0.01353931438939071 LESCETPEMI 10 Unmodified _LESCETPEMI_ 0 0 0 REV__ENSG00000188312|ENST00000375587|CENPP REV__ENSG00000188312|ENST00000375587|CENPP MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2509155273438 2 576.251582 1150.48861 1.1653 0.00067148 -1.1362 -0.00065472 0.029085 1.6761E-05 576.2508054939594 81.286 0.46855 75.11 74.927 75.395 -6.1757 85 26 4 0 0 0 0.44373 1 53273 53273 19.257 4.4187 1 48415000 + 31523 23702 20760 21169 37331 37331 -0.08061300570761887 LESDESQSLVY 11 Unmodified _LESDESQSLVY_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.2943115234375 2 635.29589 1268.57723 -0.55222 -0.00035082 -1.6923 -0.0010751 -2.2445 -0.0014259 635.294895015122 60.903 0.40506 60.414 60.23 60.635 -0.48932 39 19 3 0 0 0 0.42108 2 33225 33122;33225 20.415 2.2682 1 7751700 31524 7163;16335 20761 21170 37332;37333 37333 -0.046318457350935205 LESDPPYME 9 Unmodified _LESDPPYME_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7322387695312 2 540.73134 1079.44813 0.23483 0.00012698 0.68729 0.00037164 0.92212 0.00049862 540.7317537702767 81.875 0.41544 81.875 81.694 82.11 0 48 22 3 0 0 0 0.41742 1 45495 45495 11.64 3.7301 1 2386500 31525 2185 20762 21171 37334 37334 -0.0884189889886784 LESELDVLKSL 11 Unmodified _LESELDVLKSL_ 0 0 0 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 ENSG00000176563|ENST00000588408|CNTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.9022827148438 3 415.902738 1244.68638 -0.5519 -0.00022954 -1.0677 -0.00044406 -1.6196 -0.0006736 415.9022225338876 17.417 0.075523 17.431 17.402 17.477 0.013866 27 19 2 0 0 0 0.69509 1 8653 8653 4.7159 0.83959 1 705580 31526 8604 20763 21172 37335 37335 0.0738278495502982 LESELTEMKL 10 Unmodified _LESELTEMKL_ 0 0 0 REV__nc|ENSG00000080561|Q9UJV3-2|MID2 REV__nc|ENSG00000080561|Q9UJV3-2|MID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.209716796875 3 398.209173 1191.60569 0.49095 0.0001955 0.13749 5.475E-05 0.62844 0.00025025 398.20895443056025 22.686 0.33647 19.908 19.722 20.058 -2.7784 69 24 4 0 0 0 0.44373 1 12230 12230 12.175 0 1 21655000 + 31527 17668 20764 21173 37336 37336 0.017551806404981107 LESGLLSIL 9 Unmodified _LESGLLSIL_ 0 0 0 ENST00000402615.6_1_14:105260454-105260538:-|nuORF ENST00000402615.6_1_14:105260454-105260538:-|nuORF ENST00000402615.6_1_14:105260454-105260538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5692749023438 1 944.566275 943.558998 0.55624 0.00052541 -0.42272 -0.00039928 0.13353 0.00012612 944.5657911101525 82.324 0.38294 81.829 81.606 81.989 -0.4952 23 15 2 0 0 0 0.038285 1 45031 45031 50.855 8.7605 1 1417900 31528 12893 20765 21174 37337 37337 0.08496108871543129 LESIISGAAL 10 Unmodified _LESIISGAAL_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.28125 2 487.281857 972.549162 0.72348 0.00035254 0.048711 2.3736E-05 0.77219 0.00037627 487.2818108297464 52.275 0.35378 51.842 51.631 51.985 -0.43367 37 17 4 0 0 0 0.063761 1 28185 28185 54.774 0 1 13115000 31529 671;924 20766 21175 37338 37338 0.06178920866148019 LESIISGAAL 10 Unmodified _LESIISGAAL_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2828674316406 2 487.281857 972.549162 2.0941 0.0010204 -0.13617 -6.6356E-05 1.9579 0.00095407 487.2811777363547 62.69 0.41407 56.514 56.422 56.836 -6.1757 26 20 2 0 0 0 0.35903 1 40521 40521 24.021 1.2843 1 5593800 31530 671;924 20766 21175 37339 37339 0.06178920866148019 LESKEELDSL 10 Unmodified _LESKEELDSL_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.79931640625 2 581.795526 1161.5765 1.0674 0.00062098 2.6721 0.0015546 3.7395 0.0021756 581.797817371555 64.949 0.25822 64.949 64.818 65.077 1.5259E-05 21 12 2 0 0 0 0.40136 1 35635 35635 21.537 0 1 2998800 31531 6208 20767 21176 37340 37340 0.0021735961586273334 LESKKYCP 8 Carbamidomethyl (C) _LESKKYC(Carbamidomethyl (C))P_ LESKKYC(1)P LESKKYC(61)P 0 1 0 REV__ENSG00000158480|ENST00000289431|SPATA2 REV__ENSG00000158480|ENST00000289431|SPATA2 MSMS AL20221201_MKP_PDAC_01 4 512.759765625 2 512.760235 1023.50592 NaN NaN NaN NaN NaN NaN NaN 31.308 1 27.612 27.112 28.112 -3.6958 0 0 0 0.32286 1 17721 17721 61.357 11.424 1 + 31532 21432 20768 21177 37341 37341 1044 -0.004895921827824168 LESKPTPA 8 Unmodified _LESKPTPA_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.4630126953125 1 842.46181 841.454533 -0.20602 -0.00017357 -0.25346 -0.00021353 -0.45949 -0.0003871 842.4617132555433 51.833 0.26346 51.833 51.689 51.953 0 20 11 2 0 0 0 0.19493 1 28612 28612 71.922 2.8174 1 7760900 + 31533 19029 20769 21178 37342 37342 0.02746407114818794 LESKQDQEQI 10 Unmodified _LESKQDQEQI_ 0 0 0 REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30 REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2560424804688 2 609.304049 1216.59355 0.25761 0.00015696 -1.707 -0.0010401 -1.4494 -0.00088314 609.3026605791372 67.016 0.31393 67.016 66.839 67.153 0 29 14 3 0 0 0 0.23057 1 37371 37371 8.7454 0 1 2028600 + 31534 23572 20770 21179 37343 37343 -0.0060871977832448465 LESLLFLC 8 Unmodified _LESLLFLC_ 0 0 0 REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|19|3|anti-sense REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|19|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.257568359375 2 469.256797 936.499041 0.38309 0.00017977 3.2058 0.0015043 3.5889 0.0016841 469.25840320809317 49.047 0.24277 49.047 48.952 49.194 0 20 11 2 0 0 0 0.70131 1 26998 26998 17.087 0 1 3177100 + 31535 30118 20771 21180 37344 37344 0.028250949366452005 LESLLFLC 8 Unmodified _LESLLFLC_ 0 0 0 REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|19|3|anti-sense REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|19|3|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.256797 936.499041 0.38309 0.00017977 3.2058 0.0015043 3.5889 0.0016841 469.25840320809317 49.047 0.24277 49.047 48.952 49.194 0 0 0 NaN 17.087 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3177100 + 31536 30118 20771 21180 0.028250949366452005 LESLTSRQV 9 Unmodified _LESLTSRQV_ 0 0 0 nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1 nc|ENSG00000082805|Q8IUD2-5|ERC1 nc|ENSG00000082805|Q8IUD2-5|ERC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7321166992188 2 516.787838 1031.56112 0.64395 0.00033279 1.1307 0.00058431 1.7746 0.0009171 517.2882762204895 60.057 0.42204 60.057 59.857 60.279 0 24 18 2 0 0 0 0.18118 1 33501 33501 7.9102 0 1 1086800 31537 16058 20772 21181 37345 37345 0.046605376093339146 LESMLMETNY 10 Unmodified _LESMLMETNY_ 0 0 0 REV__ENSG00000064763|ENST00000536681|FAR2 REV__ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8508911132812 3 410.85088 1229.53081 0.026571 1.0917E-05 1.4667 0.00060261 1.4933 0.00061353 410.85158024172586 31.966 0.2615 31.837 31.699 31.961 -0.12915 23 10 3 0 0 0 0.69377 1 16615 16615 1.7423 0 1 1713400 + 31538 17361 20773 21182 37346 37346 -0.07477325162358284 LESNTALIR 9 Unmodified _LESNTALIR_ 0 0 0 REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7882385253906 2 508.790381 1015.56621 NaN NaN NaN NaN NaN NaN NaN 83.377 1 83.377 82.877 83.877 0 0 0 0 0.84737 1 46241 46241 1.8442 0.36234 1 + 31539 19734 20774 21183 37347 37347 0.05904841471954114 LESPPPSTNP 10 Unmodified _LESPPPSTNP_ 0 0 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000576149.5_1_17:503295-579448:-|nuORF nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2611694335938 2 519.758746 1037.50294 0.55686 0.00028943 1.7121 0.00088987 2.2689 0.0011793 520.2607553606886 47.999 0.38072 47.999 47.789 48.17 0 48 18 4 0 0 0 0.21783 1 26229 26229 13.042 0 1 11267000 31540 5308 20775 21184 37348 37348 -0.014311440359733751 LESPQQLFL 9 Unmodified _LESPQQLFL_ 0 0 0 REV__ENSG00000095951|ENST00000379388|HIVEP1 REV__ENSG00000095951|ENST00000379388|HIVEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7955322265625 2 537.795132 1073.57571 0.32198 0.00017316 0.65054 0.00034986 0.97252 0.00052302 537.7951434798479 91.127 0.38416 90.632 90.419 90.803 -0.49458 50 18 4 0 0 0 0.05447 1 49853 49853 43.858 3.901 1 2872100 + 31541 17953 20776 21185 37349 37349 0.0418660975747116 LESQQDAELY 10 Unmodified _LESQQDAELY_ 0 0 0 REV__ENST00000368444.7_1_6:123100911-123100989:+|nuORF REV__ENST00000368444.7_1_6:123100911-123100989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2772827148438 2 598.2775 1194.54045 0.13275 7.9419E-05 0.17213 0.00010298 0.30488 0.0001824 598.2772249528706 47.236 0.23686 47.236 47.125 47.362 0 16 10 2 0 0 0 0.56348 1 25887 25887 13.042 3.6593 1 1390300 + 31542 26009 20777 21186 37350 37350 -0.04904097560984155 LESRKRKR 8 Unmodified _LESRKRKR_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.839599609375 2 536.838531 1071.66251 1.478 0.00079345 3.3519 0.0017994 4.8299 0.0025929 537.3430684886854 106.49 0.11724 100.32 100.29 100.41 -6.1757 24 23 2 0 0 0 0.80992 1 71283 71283 0.69038 0 1 2513000 31543 3816 20778 21187 37351 37351 0.12954453822544565 LESSLGLFIP 10 Unmodified _LESSLGLFIP_ 0 0 0 ARHGAP31|p.P692L|1|0.23|ENSG00000031081|chr3:119414004-119414004|C/T|missense_variant ARHGAP31|p.P692L|1|0.23|ENSG00000031081|chr3:119414004-119414004|C/T|missense_variant ARHGAP31|p.P692L|1|0.23|ENSG00000031081|chr3:119414004-119414004|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 538.3076782226562 2 538.305332 1074.59611 NaN NaN NaN NaN NaN NaN NaN 31.438 1 27.742 27.242 28.242 -3.6958 0 0 0 0.38297 1 17803 17803 32.305 0 1 31544 34 20779 21188 37352 37352 0.06179780417301117 LESVNEVFF 9 Unmodified _LESVNEVFF_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.262451171875 2 542.27149 1082.52843 0.46966 0.00025468 -0.067312 -3.6501E-05 0.40235 0.00021818 542.2715000668791 74.373 0.35069 74.373 74.21 74.56 0 36 15 3 0 0 0 0.5029 1 41477 41477 7.2892 2.5332 1 2358500 + 31545 21890 20780 21189 37353 37353 -0.009536695135011541 LESYRRFF 8 Unmodified _LESYRRFF_ 0 0 0 REV__ENSG00000120784|ENST00000684514|ZFP30 REV__ENSG00000120784|ENST00000684514|ZFP30 MSMS AL20221201_MKP_PDAC_01 4 558.827392578125 2 559.293091 1116.57163 NaN NaN NaN NaN NaN NaN NaN 102.34 1 96.16 95.66 96.66 -6.1757 0 0 0 0.97444 1 68676 68676 5.2307 0.47466 1 + 31546 19261 20781 21190 37354 37354 0.018005650544182572 LETDKHFRE 9 Unmodified _LETDKHFRE_ 0 0 0 nc|ENSG00000070081|P80303-2|NUCB2;ENSG00000070081|ENST00000529010|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 nc|ENSG00000070081|P80303-2|NUCB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7985229492188 2 587.796195 1173.57784 -0.49694 -0.0002921 -0.72667 -0.00042713 -1.2236 -0.00071923 587.7960361817833 18.473 0.10911 18.473 18.447 18.556 0 17 12 2 0 0 0 0.57331 1 9186 9186 2.9952 1.151 1 990920 31547 1018 20782 21191 37355 37355 -0.0020096150471999863 LETDRLEDLLA 11 Unmodified _LETDRLEDLLA_ 0 0 0 REV__ENSG00000008083|ENST00000341776|JARID2 REV__ENSG00000008083|ENST00000341776|JARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.8995056152344 3 429.897875 1286.6718 -0.027377 -1.1769E-05 2.6436 0.0011365 2.6162 0.0011247 429.8985901586002 37.395 0.27351 37.417 37.263 37.537 0.021545 16 12 2 0 0 0 0.66968 1 19849 19849 3.5927 0 1 1596900 + 31548 17017 20783 21192 37356 37356 0.03992712806916643 LETIGVLAVI 10 Unmodified _LETIGVLAVI_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000526142.5_1_11:418528-419721:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8263549804688 2 514.323525 1026.6325 1.489 0.00076583 0.4245 0.00021833 1.9135 0.00098416 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.72247 1 73397 73397 0.40072 0 1 4939700 31549 9332 20784 21193 37357 37357 0.12024657314009346 LETIQEKL 8 Unmodified _LETIQEKL_ 0 0 0 ENST00000439282.1_1_1:109529720-109529831:-|nuORF ENST00000439282.1_1_1:109529720-109529831:-|nuORF ENST00000439282.1_1_1:109529720-109529831:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2821960449219 2 487.281857 972.549162 1.3224 0.00064436 1.0895 0.00053091 2.4119 0.0011753 487.28246379335314 88.211 0.31975 82.035 81.869 82.189 -6.1757 24 17 2 0 0 0 0.57045 1 58132 58132 28.487 0 1 10093000 31550 13374 20785 21194 37358 37358 0.06178920866148019 LETLNQLRS 9 Unmodified _LETLNQLRS_ 0 0 0 REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1 REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3053588867188 2 537.301113 1072.58767 0.9312 0.00050033 -1.5269 -0.00082039 -0.59568 -0.00032006 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.047788 1 51908 51908 45.7 1.8413 1 243440000 + 31551 19549 20786 21195 37359 37359 0.05428226500657729 LETLPKEDLI 10 Unmodified _LETLPKEDLI_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MSMS AL20221201_MKP_PDAC_01 4 585.8345336914062 2 585.834454 1169.65436 NaN NaN NaN NaN NaN NaN NaN 93.018 1 86.843 86.343 87.343 -6.1757 0 0 0 0.42631 1 61539 61539 29.841 0.759 1 31552 4768 20787 21196 37360 37360 0.07631417271909413 LETLRQARFRP 11 Unmodified _LETLRQARFRP_ 0 0 0 REV__ENSG00000100802|ENST00000299088|C14orf93 REV__ENSG00000100802|ENST00000299088|C14orf93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.93701171875 3 462.936999 1385.78917 0.81082 0.00037536 -0.079126 -3.663E-05 0.7317 0.00033873 462.93698395555714 18.825 0.42147 16.204 16.001 16.423 -2.6215 121 30 5 0 0 0 0.72131 1 10060 10060 2.2527 0.34635 1 233300000 + 31553 18109 20788 21197 37361 37361 0.1117033525702027 LETLSELCGIL 11 Unmodified _LETLSELCGIL_ 0 0 0 ENST00000465942.1_1_13:46065604-46085992:+|nuORF;nc|ENSG00000136152|Q96JB2-2|COG3;ENSG00000136152|ENST00000349995|COG3 ENST00000465942.1_1_13:46065604-46085992:+|nuORF ENST00000465942.1_1_13:46065604-46085992:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.8192749023438 2 595.820489 1189.62643 0.18061 0.00010761 -2.1759 -0.0012964 -1.9953 -0.0011888 595.8194347852576 61.265 0.21685 61.265 61.149 61.366 0 13 9 2 0 0 0 0.6889 1 34166 34166 5.2969 0.54088 1 516130 31554 4793 20789 21198 37362 37362 0.03919771020173357 LETLSQMERYQ 11 Unmodified _LETLSQMERYQ_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113730719-113733878:+|nuORF;ENST00000546787.1_1_12:113730842-113731967:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.5617980957031 3 466.562498 1396.66566 -0.021501 -1.0032E-05 -2.0732 -0.00096728 -2.0947 -0.00097732 466.5618067350719 25.684 0.16706 25.684 25.57 25.737 0 13 7 2 0 0 0 0.7326 1 13188 13188 0.40827 0 1 1135700 31555 9509 20790 21199 37363 37363 -0.016801286962618178 LETLWWEF 8 Unmodified _LETLWWEF_ 0 0 0 nc|ENSG00000093183|Q9BRL7-3|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C;ENSG00000093183|ENST00000264454|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2789306640625 2 562.276575 1122.5386 NaN NaN NaN NaN NaN NaN NaN 67.204 1 66.722 66.222 67.222 -0.48218 0 0 0 0.95607 1 36712 36712 9.3474 0.75416 1 31556 1633 20791 21200 37364 37364 -0.017770617882888473 LETQFREF 8 Unmodified _LETQFREF_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.7662353515625 2 535.269281 1068.52401 1.5363 0.00082233 -0.35165 -0.00018823 1.1846 0.0006341 535.7703615367049 100.92 0.16071 94.743 94.67 94.831 -6.1757 19 9 3 0 0 0 8.7369 1 67649 67649 14.582 0 1 33806000 + 31557 21951 20792 21201 37365 37365 -0.007511339364327796 LETRIRNHD 9 Unmodified _LETRIRNHD_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8432312011719 3 385.207266 1152.59997 -0.61463 -0.00023676 -1.4571 -0.00056127 -2.0717 -0.00079803 385.20700698476656 26.857 0.14808 26.857 26.782 26.93 0 15 6 3 0 0 0 0.21885 1 13793 13793 0.96228 0 1 1232600 31558 5578 20793 21202 37366 37366 0.029772629636909187 LETSAMIPS 9 Unmodified _LETSAMIPS_ 0 0 0 REV__ENSG00000118689|ENST00000406360|FOXO3 REV__ENSG00000118689|ENST00000406360|FOXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2392578125 2 474.738968 947.463383 0.56839 0.00026984 0.13696 6.5019E-05 0.70534 0.00033485 474.73942190482484 89.126 0.33527 88.621 88.416 88.751 -0.50423 30 14 3 0 0 0 0.55775 1 48682 48682 3.9444 0 1 608620 + 31559 19164 20794 21203 37367 37367 -0.012449873110199405 LETSQKESRS 10 Unmodified _LETSQKESRS_ 0 0 0 MYH8|p.A1472T|1|0.15|ENSG00000133020|chr17:10396667-10396667|C/T|missense_variant MYH8|p.A1472T|1|0.15|ENSG00000133020|chr17:10396667-10396667|C/T|missense_variant MYH8|p.A1472T|1|0.15|ENSG00000133020|chr17:10396667-10396667|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 388.8672485351562 3 388.866687 1163.57823 NaN NaN NaN NaN NaN NaN NaN 45.245 1 40.29 39.79 40.79 -4.9549 0 0 0 0.68942 1 27741 27741 10.899 1.6552 1 31560 16002 20795 21204 37368 37368 0.0029841342447980423 LETVYWTF 8 Unmodified _LETVYWTF_ 0 0 0 REV__ENST00000477401.5_1_7:14660999-14880939:-|nuORF REV__ENST00000477401.5_1_7:14660999-14880939:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.760498046875 2 529.7633 1057.51205 0.096478 5.1111E-05 -3.5249 -0.0018674 -3.4284 -0.0018163 529.7612176543071 56.339 0.19339 56.339 56.301 56.495 0 13 8 2 0 0 0 0.78849 1 31352 31352 9.3474 1.4373 1 1391300 + 31561 26635 20796 21205 37369 37369 -0.014407506796487723 LETYNPLPIY 10 Unmodified _LETYNPLPIY_ 0 0 0 REV__ENSG00000188649|ENST00000646931|CC2D2B REV__ENSG00000188649|ENST00000646931|CC2D2B MSMS AL20221201_MKP_PDAC_01 4 611.8189697265625 2 611.821347 1221.62814 NaN NaN NaN NaN NaN NaN NaN 101.69 1 95.51 95.01 96.01 -6.1757 0 0 0 0.85122 1 68248 68248 10.074 0 1 + 31562 23722 20797 21206 37370 37370 0.02619148100438906 LEVEAALYYKD 11 Unmodified _LEVEAALYYKD_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3390502929688 2 657.334818 1312.65508 0.92012 0.00060482 3.0924 0.0020328 4.0125 0.0026376 657.8385223967821 102.51 0.075317 96.334 96.287 96.362 -6.1757 19 11 2 0 0 0 0.39949 1 68795 68795 21.537 0 1 5517800 31563 9261 20798 21207 37371 37371 0.011262119209277444 LEVELLMLC 9 Unmodified _LEVELLMLC_ 0 0 0 REV__ENST00000370651.5_1_6:64290081-64290159:+|nuORF REV__ENST00000370651.5_1_6:64290081-64290159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3055419921875 2 531.782321 1061.55009 0.51682 0.00027484 -3.31 -0.0017602 -2.7932 -0.0014854 531.7803367537108 61.101 0.32508 61.101 60.929 61.254 0 18 13 2 0 0 0 0.209 1 33994 33994 7.2892 7.2892 1 322930 + 31564 26063 20799 21208 37372 37372 0.02177675919210742 LEVEQVIPL 9 Unmodified _LEVEQVIPL_ 0 0 0 ENSG00000174840|ENST00000311180|PDE12;ENST00000487257.1_2_3:57545269-57545728:+|nuORF ENSG00000174840|ENST00000311180|PDE12 ENSG00000174840|ENST00000311180|PDE12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.3057250976562 2 520.305332 1038.59611 0.37924 0.00019732 0.43404 0.00022584 0.81328 0.00042315 520.3055129788621 96.592 1.1769 96.592 95.633 96.81 0 184 80 4 0 0 0 0.30562 1 53291 53291 16.942 4.4107 1 8040700 31565 8462 20800 21209 37373 37373 0.07835780417281057 LEVEQVIPL 9 Unmodified _LEVEQVIPL_ 0 0 0 ENSG00000174840|ENST00000311180|PDE12;ENST00000487257.1_2_3:57545269-57545728:+|nuORF ENSG00000174840|ENST00000311180|PDE12 ENSG00000174840|ENST00000311180|PDE12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3069458007812 2 520.305332 1038.59611 1.2752 0.00066348 1.7984 0.00093572 3.0736 0.0015992 520.3056330515722 100.31 0.15697 94.133 94.03 94.187 -6.1757 32 9 4 0 0 0 0.16226 1 67004 67004 26.884 1.4843 1 193310000 31566 8462 20800 21209 37374 37374 0.07835780417281057 LEVFANDKEI 10 Unmodified _LEVFANDKEI_ 0 0 0 nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3102416992188 2 589.308603 1176.60265 0.088991 5.2443E-05 0.50836 0.00029958 0.59735 0.00035202 589.308874706567 79.925 0.24796 79.925 79.752 80 0 24 11 3 0 0 0 0.65282 1 44377 44377 8.1555 0.8663 1 1069700 31567 3402 20801 21210 37375 37375 0.0214167357801216 LEVFSAVISAN 11 Unmodified _LEVFSAVISAN_ 0 0 0 REV__nc|ENSG00000106991|P17813-2|ENG REV__nc|ENSG00000106991|P17813-2|ENG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3115234375 2 575.311146 1148.60774 NaN NaN NaN NaN NaN NaN NaN 45.419 1 45.419 44.919 45.919 0 0 0 0 0.39541 1 24756 24756 28.495 1.6109 1 + 31568 18544 20802 21211 37376 37376 0.03937977440659779 LEVGAGPG 8 Unmodified _LEVGAGPG_ 0 0 0 ENST00000306336.5_2_2:85835478-85835544:-|nuORF ENST00000306336.5_2_2:85835478-85835544:-|nuORF ENST00000306336.5_2_2:85835478-85835544:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1883850097656 2 350.187229 698.359904 -0.11721 -4.1047E-05 2.8323 0.00099184 2.7151 0.0009508 350.187694362222 29.678 0.25038 29.708 29.589 29.84 0.030106 16 10 2 0 0 0 0.80975 1 15529 15529 0.79363 0 1 1300900 31569 11624 20803 21212 37377 37377 -0.0013410663650574861 LEVGFPRR 8 Unmodified _LEVGFPRR_ 0 0 0 ENST00000524670.5_1_11:118869052-118882689:+|nuORF ENST00000524670.5_1_11:118869052-118882689:+|nuORF ENST00000524670.5_1_11:118869052-118882689:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2842102050781 2 487.282526 972.550499 0.48102 0.00023439 0.39413 0.00019205 0.87515 0.00042645 487.2826934131462 48.768 0.29407 48.724 48.573 48.867 -0.04369 35 14 3 0 0 0 0.75262 1 26289 26289 12.532 12.532 1 12854000 31570 14782 20804 21213 37378 37378 0.06312599745569969 LEVHEAPF 8 Unmodified _LEVHEAPF_ 0 0 0 REV__nc|ENSG00000064012|Q14790-9|CASP8 REV__nc|ENSG00000064012|Q14790-9|CASP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2396240234375 2 471.239993 940.465432 0.54963 0.00025901 -0.64612 -0.00030448 -0.096488 -4.5469E-05 471.2396224984445 84.576 0.41253 84.077 83.932 84.344 -0.49961 26 18 2 0 0 0 0.74163 1 46249 46249 13.508 0 1 1861700 + 31571 29499 20805 21214 37379 37379 -0.007181905109064246 LEVINDYHF 9 Unmodified _LEVINDYHF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163564|Q6K0P9-6|PYHIN1;nc|ENSG00000163564|Q6K0P9-5|PYHIN1;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.28369140625 2 575.282389 1148.55022 0.68221 0.00039247 -0.2705 -0.00015561 0.41171 0.00023685 575.2820532528626 57.611 0.37731 57.611 57.395 57.772 0 48 18 3 0 0 0 0.28023 1 32123 32123 18.146 0 1 22395000 31572 7019 20806 21215 37380 37380 -0.01810864764956932 LEVINDYHF 9 Unmodified _LEVINDYHF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163564|Q6K0P9-6|PYHIN1;nc|ENSG00000163564|Q6K0P9-5|PYHIN1;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2822875976562 2 575.282389 1148.55022 1.3449 0.00077367 -0.60525 -0.00034819 0.73961 0.00042548 575.2820159037993 64.517 0.60341 58.342 58.167 58.77 -6.1757 59 33 2 0 0 0 0.07916 2 41918 41771;41918 37.974 3.5723 1 17343000 31573 7019 20806 21215 37381;37382 37382 -0.01810864764956932 LEVIRRSL 8 Unmodified _LEVIRRSL_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2822875976562 2 493.311284 984.608014 0.51309 0.00025311 -0.36846 -0.00018177 0.14463 7.1345E-05 493.3111143154949 101.14 0.43006 101.01 100.79 101.22 -0.13293 26 17 2 0 0 0 8.7369 1 55202 55202 5.2307 0 1 253840 + 31574 21011 20807 21216 37383 37383 0.11509441951136523 LEVIRRSL 8 Unmodified _LEVIRRSL_ 0 0 0 REV__nc|ENSG00000149639|O94964-4|MTCL2 REV__nc|ENSG00000149639|O94964-4|MTCL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 493.311284 984.608014 -0.19042 -9.3934E-05 0.73094 0.00036058 0.54053 0.00026665 493.3112111335089 101.17 0.40589 101.12 100.92 101.33 -0.04216 0.057183 0.00071568 NaN 5.2307 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1209600 + 31575 21011 20807 21216 0.11509441951136523 LEVLKSWS 8 Unmodified _LEVLKSWS_ 0 0 0 ENST00000378980.7_1_9:34581122-34589618:-|nuORF ENST00000378980.7_1_9:34581122-34589618:-|nuORF ENST00000378980.7_1_9:34581122-34589618:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2715454101562 2 481.271293 960.528032 0.33113 0.00015936 -0.83266 -0.00040074 -0.50154 -0.00024137 481.27130225121886 68.91 0.29509 68.429 68.309 68.604 -0.48071 28 12 3 0 0 0 0.26367 1 37676 37676 60.074 60.074 1 1825800 31576 12557 20808 21217 37384 37384 0.04618955557282334 LEVNVIEHGFF 11 Unmodified _LEVNVIEHGFF_ 0 0 0 REV__ENSG00000178997|ENST00000458580|EXD1 REV__ENSG00000178997|ENST00000458580|EXD1 MSMS AL20221201_MKP_PDAC_01 4 652.3383178710938 2 652.337695 1302.66084 NaN NaN NaN NaN NaN NaN NaN 58.643 1 52.569 52.069 53.069 -6.0745 0 0 0 0.61053 1 37588 37588 20.415 2.0414 1 + 31577 23077 20809 21218 37385 37385 0.02161355223256578 LEVPAYEDIF 10 Unmodified _LEVPAYEDIF_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.201171875 3 399.200895 1194.58086 -0.45467 -0.0001815 0.36787 0.00014685 -0.086795 -3.4649E-05 399.20116881721543 19.53 0.30934 19.558 19.447 19.756 0.028355 102 30 5 0 0 0 0.42068 1 9816 9816 17.443 4.57 1 15002000 31578 1628 20810 21219 37386 37386 -0.008651311705762055 LEVRLRRPI 9 Unmodified _LEVRLRRPI_ 0 0 0 REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 REV__nc|ENSG00000104228|Q9UPQ4-2|TRIM35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5839233398438 3 384.583897 1150.72986 1.142 0.00043919 -0.21791 -8.3806E-05 0.92409 0.00035539 384.5838340466496 82.99 1.0461 76.814 76.124 77.17 -6.1757 132 58 3 0 0 0 0.37578 5 54339 54209;54339;54476;54606;54757 13.615 1.7063 1 35863000 + 31579 18344 20811 21220 37387;37388;37389;37390;37391 37388 0.16052484033525616 LEVSIGYLVY 10 Unmodified _LEVSIGYLVY_ 0 0 0 ENST00000607746.1_1_3:107854179-107855418:+|nuORF ENST00000607746.1_1_3:107854179-107855418:+|nuORF ENST00000607746.1_1_3:107854179-107855418:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3190307617188 2 578.31844 1154.62233 NaN NaN NaN NaN NaN NaN NaN 91.67 1 91.189 90.689 91.689 -0.48092 0 0 0 0.92825 1 50108 50108 6.7232 0 1 31580 15866 20812 21221 37392 37392 0.05120049588776965 LEVTIDGYSV 10 Unmodified _LEVTIDGYSV_ 0 0 0 REV__nc|ENSG00000132670|P18433-6|PTPRA REV__nc|ENSG00000132670|P18433-6|PTPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2824096679688 2 548.282054 1094.54956 0.61588 0.00033768 0.036719 2.0132E-05 0.6526 0.00035781 548.2820855491012 73.227 0.73534 72.751 72.451 73.187 -0.47588 81 32 3 0 0 0 0.44373 1 40149 40149 19.257 2.3147 1 7636700 + 31581 19871 20813 21222 37393 37393 0.006062957953417936 LEVTSIEPF 9 Unmodified _LEVTSIEPF_ 0 0 0 nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7943725585938 2 517.773865 1033.53318 0.94199 0.00048774 -1.3727 -0.00071074 -0.4307 -0.00022301 517.7723860743786 101.38 0.14889 95.203 95.125 95.274 -6.1757 12 7 3 0 0 0 0.16785 1 67955 67955 16.942 0 1 30674000 31582 5525 20814 21223 37394 37394 0.017752146292423276 LEVVSQWY 8 Unmodified _LEVVSQWY_ 0 0 0 ENST00000478867.1_1_3:113604431-113604875:+|nuORF;ENSG00000175826|ENST00000574322|CTDNEP1 ENST00000478867.1_1_3:113604431-113604875:+|nuORF ENST00000478867.1_1_3:113604431-113604875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2633056640625 2 512.260925 1022.5073 0.39332 0.00020148 0.080319 4.1144E-05 0.47364 0.00024262 512.260822517592 68.623 0.25954 68.623 68.526 68.786 0 17 11 2 0 0 0 0.80044 1 38258 38258 6.3541 0 1 630900 31583 8544 20815 21224 37395 37395 -0.0030563482237084827 LEVYHHNKL 9 Unmodified _LEVYHHNKL_ 0 0 0 REV__ENSG00000158077|ENST00000299481|NLRP14 REV__ENSG00000158077|ENST00000299481|NLRP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8765869140625 3 384.876857 1151.60874 1.0407 0.00040054 -1.1684 -0.00044969 -0.1277 -4.915E-05 384.8764242119239 35.32 0.63204 31.225 31.007 31.639 -4.0951 128 38 5 0 0 0 0.51218 1 20645 20645 4.1895 1.3462 1 171770000 + 31584 21414 20816 21225 37396 37396 0.03900236600179596 LEWDEMDI 8 Unmodified _LEWDEMDI_ 0 0 0 ENSG00000151320|ENST00000280979|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7266235351562 2 525.726058 1049.43756 0.64302 0.00033805 0.087394 4.5945E-05 0.73041 0.000384 525.7260135622475 66.575 0.31045 66.575 66.348 66.658 0 23 13 2 0 0 0 0.80143 1 37177 37177 5.7604 0 1 4345400 31585 6103 20817 21226 37397 37397 -0.08517881553302686 LEWEEQQLD 9 Unmodified _LEWEEQQLD_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MSMS AL20221201_MKP_PDAC_01 4 595.3578491210938 2 595.272218 1188.52988 NaN NaN NaN NaN NaN NaN NaN 102.44 1 96.264 95.764 96.764 -6.1757 0 0 0 0.82739 1 68744 68744 4.3292 0.73274 1 31586 3069 20818 21227 37398 37398 -0.05684080215405629 LEWELLEQPK 10 Unmodified _LEWELLEQPK_ 0 0 0 REV__ENST00000539268.1_1_11:63010971-63011136:+|nuORF REV__ENST00000539268.1_1_11:63010971-63011136:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.8465576171875 2 642.845353 1283.67615 NaN NaN NaN NaN NaN NaN NaN 91.785 1 91.785 91.285 92.285 0 0 0 0 0.97855 1 50757 50757 2.9952 0.26005 1 + 31587 19177 20819 21228 37399 37399 0.04566222020457644 LEWELLEQPK 10 Unmodified _LEWELLEQPK_ 0 0 0 REV__ENST00000539268.1_1_11:63010971-63011136:+|nuORF REV__ENST00000539268.1_1_11:63010971-63011136:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.8468627929688 2 642.845353 1283.67615 NaN NaN NaN NaN NaN NaN NaN 91.977 1 91.977 91.477 92.477 0 0 0 0 0.97855 1 50861 50861 2.9952 0.26005 1 + 31588 19177 20819 21228 37400 37400 0.04566222020457644 LEWFGFSHF 9 Unmodified _LEWFGFSHF_ 0 0 0 REV__ENST00000458044.1_1_1:235097160-235098750:-|nuORF REV__ENST00000458044.1_1_1:235097160-235098750:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5189514160156 3 390.51867 1168.53418 -0.37005 -0.00014451 0.68959 0.0002693 0.31954 0.00012479 390.5187276146201 29.274 0.36894 29.274 29.063 29.432 0 22 17 2 0 0 0 0.58865 1 15163 15163 1.0715 0 1 778020 + 31589 27273 20820 21229 37401 37401 -0.0433452621118704 LEWHHYPR 8 Unmodified _LEWHHYPR_ 0 0 0 REV__ENST00000507419.5_1_5:133984013-133984100:-|nuORF REV__ENST00000507419.5_1_5:133984013-133984100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2838134765625 2 569.283057 1136.55156 0.083096 4.7305E-05 -0.4644 -0.00026437 -0.3813 -0.00021707 569.2827235906193 51.316 0.28848 50.903 50.68 50.969 -0.41351 30 14 3 0 0 0 0.6895 1 27687 27687 18.135 2.2878 1 10069000 + 31590 28102 20821 21230 37402 37402 -0.011251858855302999 LEWIEEEH 8 Unmodified _LEWIEEEH_ 0 0 0 REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7548217773438 2 542.750921 1083.48729 0.23956 0.00013002 1.1183 0.00060695 1.3579 0.00073698 542.7527425463484 75.649 0.48537 75.649 75.369 75.855 0 26 20 2 0 0 0 0.80722 1 42176 42176 2.3027 0.4585 1 884050 + 31591 28722 20822 21231 37403 37403 -0.0511143055298362 LEWLVKEAF 9 Unmodified _LEWLVKEAF_ 0 0 0 ENST00000530841.5_3_8:110631076-110631211:-|nuORF ENST00000530841.5_3_8:110631076-110631211:-|nuORF ENST00000530841.5_3_8:110631076-110631211:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3215942382812 2 567.813325 1133.6121 0.67347 0.0003824 -0.62597 -0.00035543 0.047495 2.6968E-05 567.8126693757862 49.796 0.33763 49.796 49.649 49.986 0 26 15 2 0 0 0 0.20728 1 27514 27514 8.5933 0 1 3080400 31592 14896 20823 21232 37404 37404 0.050634866541713563 LEWSVGPI 8 Unmodified _LEWSVGPI_ 0 0 0 nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7437744140625 2 450.744911 899.475269 0.31676 0.00014278 -0.81328 -0.00036658 -0.49652 -0.00022381 450.7444325322058 62.189 0.23042 62.189 62.044 62.274 0 18 11 2 0 0 0 0.72953 1 34679 34679 14.582 1.0738 1 2282000 31593 2234 20824 21233 37405 37405 0.021509974944933674 LEWSVGPI 8 Unmodified _LEWSVGPI_ 0 0 0 nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7440795898438 2 450.744911 899.475269 0.56505 0.00025469 -0.66102 -0.00029795 -0.095973 -4.326E-05 450.7445212751037 62.527 0.35224 62.04 61.831 62.183 -0.48764 39 16 3 0 0 0 0.67481 1 34025 34025 19.439 2.4967 1 8414300 31594 2234 20824 21233 37406 37406 0.021509974944933674 LEWSVGPI 8 Unmodified _LEWSVGPI_ 0 0 0 nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 nc|ENSG00000104774|O00754-2|MAN2B1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 450.744911 899.475269 0.31676 0.00014278 -0.81328 -0.00036658 -0.49652 -0.00022381 450.7444325322058 62.189 0.23042 62.189 62.044 62.274 0 0.0748 -8.1965E-05 NaN 19.439 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2282000 31595 2234 20824 21233 0.021509974944933674 LEWSWRWL 8 Unmodified _LEWSWRWL_ 0 0 0 REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8057861328125 2 588.303458 1174.59236 0.36142 0.00021263 0.1965 0.0001156 0.55792 0.00032823 588.3033796814606 93.59 0.26496 93.133 92.98 93.245 -0.4574 22 11 3 0 0 0 0.80676 1 51121 51121 2.5775 0.27475 1 329030 + 31596 25033 20825 21234 37407 37407 0.012051554340814619 LEWSWRWL 8 Unmodified _LEWSWRWL_ 0 0 0 REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8722839355469 3 392.538064 1174.59236 0.091455 3.59E-05 -0.86965 -0.00034137 -0.77819 -0.00030547 392.5380033733862 25.04 0.34199 25.065 24.825 25.167 0.024427 31 15 3 0 0 0 0.6895 1 12866 12866 13.906 0.29118 1 15411000 + 31597 25033 20825 21234 37408 37408 0.012051554340814619 LEWSWRWL 8 Unmodified _LEWSWRWL_ 0 0 0 REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8722839355469 3 392.538064 1174.59236 0.091455 3.59E-05 -0.86965 -0.00034137 -0.77819 -0.00030547 392.5380033733862 25.04 0.34199 25.065 24.825 25.167 0.024427 31 15 3 0 0 0 8.7369 1 12866 12866 13.906 0.29118 1 15411000 + 31598 25033 20825 21234 37409 37409 0.012051554340814619 LEWSWRWL 8 Unmodified _LEWSWRWL_ 0 0 0 REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF REV__ENST00000262815.12_2_19:19467289-19467406:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.8720703125 3 392.538064 1174.59236 0.69298 0.00027202 -0.32375 -0.00012708 0.36923 0.00014494 392.53801168258315 27.934 0.50891 24.786 24.568 25.077 -3.1482 61 27 3 0 0 0 8.7369 1 15459 15459 13.042 0.86772 1 15960000 + 31599 25033 20825 21234 37410 37410 0.012051554340814619 LEYEEGSYNL 10 Unmodified _LEYEEGSYNL_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7734375 2 608.772051 1215.52955 0.28287 0.0001722 0.28851 0.00017564 0.57137 0.00034784 608.7725498921533 58.353 0.28233 57.862 57.723 58.005 -0.49079 30 13 4 0 0 0 0.48505 1 31709 31709 17.113 2.7075 1 3818400 31600 2457 20826 21235 37411 37411 -0.06959499935260283 LEYEEGSYNL 10 Unmodified _LEYEEGSYNL_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 608.772051 1215.52955 0.28287 0.0001722 0.28851 0.00017564 0.57137 0.00034784 608.7725498921533 58.353 0.28233 57.862 57.723 58.005 -0.49079 -0.065982 -0.00041386 NaN 17.113 30 13 4 NaN NaN NaN NaN 0 NaN NaN 0 3818400 31601 2457 20826 21235 -0.06959499935260283 LEYEEGSYNL 10 Unmodified _LEYEEGSYNL_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.772051 1215.52955 0.90407 0.00055037 2.5595 0.0015582 3.4636 0.0021085 608.7740004583214 58.06 0.16117 57.994 57.871 58.033 -0.066036 0.065982 0.0023512 NaN 17.113 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1747800 31602 2457 20826 21235 -0.06959499935260283 LEYEEIALDL 10 Unmodified _LEYEEIALDL_ 0 0 0 ENSG00000198690|ENST00000362065|FAN1;ENST00000565280.5_1_15:31198658-31229456:+|nuORF;nc|ENSG00000198690|Q9Y2M0-2|FAN1 ENSG00000198690|ENST00000362065|FAN1 ENSG00000198690|ENST00000362065|FAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3074951171875 2 604.308269 1206.60199 0.33828 0.00020443 -2.3422 -0.0014154 -2.0039 -0.001211 604.3070639057185 54.013 0.19387 54.013 53.876 54.07 0 15 8 2 0 0 0 0.35903 1 29929 29929 24.021 7.8715 1 2592600 31603 10124 20827 21236 37412 37412 0.006948341382667422 LEYELLLIQQL 11 Unmodified _LEYELLLIQQL_ 0 0 0 ENSG00000134480|ENST00000256897|CCNH;ENST00000505587.5_1_5:86695297-86703987:-|nuORF ENSG00000134480|ENST00000256897|CCNH ENSG00000134480|ENST00000256897|CCNH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.9345703125 3 458.934149 1373.78062 0.52236 0.00023973 0.83447 0.00038297 1.3568 0.00062269 458.9345689133812 62.128 0.17617 61.64 61.55 61.726 -0.48764 9 7 2 0 0 0 0.73237 1 33867 33867 1.2148 0.10508 1 1006300 31604 4612 20828 21237 37413 37413 0.10867923777209398 LEYERCVVHF 10 Unmodified _LEYERCVVHF_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.8140869140625 2 647.816073 1293.61759 0.75265 0.00048758 0.48883 0.00031667 1.2415 0.00080425 647.8164973436814 50.613 0.18667 50.2 50.072 50.258 -0.41351 22 8 3 0 0 0 0.48505 1 27235 27235 17.113 0.96379 1 4769400 + 31605 29660 20829 21238 37414 37414 -0.01747157825661816 LEYERCVVHF 10 Unmodified _LEYERCVVHF_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.8157958984375 2 647.816073 1293.61759 1.5423 0.00099912 -1.903 -0.0012328 -0.36074 -0.00023369 647.8148160694235 50.28 0.36876 50.231 50.107 50.475 -0.048824 23 17 2 0 0 0 0.50362 1 27186 27186 16.149 0.90062 1 2993300 + 31606 29660 20829 21238 37415 37415 -0.01747157825661816 LEYERCVVHF 10 Unmodified _LEYERCVVHF_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 647.816073 1293.61759 0.75265 0.00048758 0.48883 0.00031667 1.2415 0.00080425 647.8164973436814 50.613 0.18667 50.2 50.072 50.258 -0.41351 -0.015734 0.0025255 NaN 17.113 22 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4769400 + 31607 29660 20829 21238 -0.01747157825661816 LEYGALFLRI 10 Unmodified _LEYGALFLRI_ 0 0 0 REV__ENSG00000151502|ENST00000281187|VPS26B REV__ENSG00000151502|ENST00000281187|VPS26B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8485717773438 2 597.847699 1193.68084 1.6796 0.0010042 0.35197 0.00021043 2.0316 0.0012146 597.848089099922 93.321 0.23359 93.344 93.214 93.448 0.022987 19 8 3 0 0 0 0.64628 1 51896 51896 8.7454 0 1 2245200 + 31608 21072 20830 21239 37416 37416 0.09175150953888078 LEYGAPLDLL 10 Unmodified _LEYGAPLDLL_ 0 0 0 REV__ENSG00000116035|ENST00000234392|VAX2 REV__ENSG00000116035|ENST00000234392|VAX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.80517578125 2 552.30279 1102.59103 0.44855 0.00024773 0.16029 8.8526E-05 0.60883 0.00033626 552.3026295276796 100.1 0.16354 99.938 99.845 100.01 -0.1575 11 5 3 0 0 0 0.62068 1 54653 54653 10.074 0 1 1190900 + 31609 19022 20831 21240 37417 37417 0.043834765546762355 LEYGPRCSCF 10 Unmodified _LEYGPRCSCF_ 0 0 0 REV__ENST00000540394.2_12:7241870-7244269:-|nuORF REV__ENST00000540394.2_12:7241870-7244269:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1717834472656 3 392.172177 1173.4947 0.065558 2.571E-05 -0.3482 -0.00013655 -0.28264 -0.00011084 392.1722819721129 46.789 0.30956 46.789 46.631 46.941 0 59 14 5 0 0 0 0.67755 1 25665 25665 5.4027 0.5057 1 66261000 + 31610 21479 20832 21241 37418 37418 -0.08510737548567704 LEYGPRCSCF 10 Unmodified _LEYGPRCSCF_ 0 0 0 REV__ENST00000540394.2_12:7241870-7244269:-|nuORF REV__ENST00000540394.2_12:7241870-7244269:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.1722717285156 3 392.172177 1173.4947 0.69265 0.00027164 -0.80158 -0.00031436 -0.10892 -4.2717E-05 392.1720874704774 47.12 0.31071 46.783 46.624 46.935 -0.33664 57 15 5 0 0 0 0.65023 1 25299 25299 8.4443 4.8572 1 52534000 + 31611 21479 20832 21241 37419 37419 -0.08510737548567704 LEYISFRE 8 Unmodified _LEYISFRE_ 0 0 0 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 ENSG00000172640|ENST00000310248|OR10AD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7719116210938 2 528.771657 1055.52876 0.64592 0.00034154 0.1445 7.6405E-05 0.79041 0.00041795 528.7718795697389 81.654 0.36301 81.159 80.95 81.313 -0.4952 35 14 3 0 0 0 0.58902 1 44677 44677 26.884 8.7487 1 2403000 31612 8239 20833 21242 37420 37420 0.003217502063534994 LEYLSGGELF 10 Unmodified _LEYLSGGELF_ 0 0 0 nc|ENSG00000108443|P23443-5|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENST00000472940.5_1_17:58003798-58008230:+|nuORF;ENST00000577881.1_1_17:60316192-60324457:-|nuORF;ENST00000489824.1_1_17:57971183-58007752:+|nuORF nc|ENSG00000108443|P23443-5|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.28662109375 2 564.284597 1126.55464 0.10236 5.7762E-05 -2.8262 -0.0015948 -2.7239 -0.001537 564.2826761419982 69.972 0.36562 69.493 69.203 69.568 -0.47903 24 16 2 0 0 0 0.66569 1 38130 38130 6.7232 1.4925 1 1412000 31613 2570 20834 21243 37421 37421 -0.003574003420453664 LEYNRIAKDL 10 Unmodified _LEYNRIAKDL_ 0 0 0 nc|ENSG00000088305|Q9UBC3-5|DNMT3B nc|ENSG00000088305|Q9UBC3-5|DNMT3B nc|ENSG00000088305|Q9UBC3-5|DNMT3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 412.5652770996094 3 412.231189 1233.67174 0.63316 0.00026101 0.84446 0.00034811 1.4776 0.00060912 412.5657567539163 76.587 1.0258 70.411 69.801 70.827 -6.1757 77 55 2 0 0 0 0.22438 1 50096 50096 11.518 0 1 21366000 31614 16065 20835 21244 37422 37422 0.06424757597551434 LEYRKRQR 8 Unmodified _LEYRKRQR_ 0 0 0 nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E;nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E nc|ENSG00000005483|Q8IZD2-6|KMT2E nc|ENSG00000005483|Q8IZD2-6|KMT2E MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5598449707031 3 383.559751 1147.65742 0.5882 0.00022561 0.42099 0.00016148 1.0092 0.00038709 383.5599211527244 14.705 0.11825 12.203 12.149 12.267 -2.5029 30 18 2 0 0 0 0.80068 1 7476 7476 6.2058 0.42235 1 2416900 31615 311 20836 21245 37423 37423 0.08950149959923692 LEYRQLVL 8 Unmodified _LEYRQLVL_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.3058471679688 2 517.305667 1032.59678 0.01347 6.968E-06 -1.077 -0.00055713 -1.0635 -0.00055016 517.305061208112 71.543 0.45621 71.543 71.405 71.861 0 30 20 2 0 0 0 0.58902 1 39836 39836 26.884 4.1474 1 1264200 + 31616 21485 20837 21246 37424 37424 0.08178619856994374 LEYRQLVL 8 Unmodified _LEYRQLVL_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2796020507812 2 517.305667 1032.59678 0.01347 6.968E-06 -1.077 -0.00055713 -1.0635 -0.00055016 517.305061208112 71.543 0.45621 71.543 71.405 71.861 0 30 20 2 0 0 0 8.7369 1 39795 39795 7.2892 0.56607 1 1264200 + 31617 21485 20837 21246 37425 37425 0.08178619856994374 LEYRQLVL 8 Unmodified _LEYRQLVL_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3055419921875 2 517.305667 1032.59678 0.47936 0.00024798 0.23863 0.00012345 0.71799 0.00037142 517.3056527811644 71.93 0.44486 71.454 71.242 71.686 -0.4761 51 17 4 0 0 0 0.55032 1 39426 39426 30.225 4.8255 1 14626000 + 31618 21485 20837 21246 37426 37426 0.08178619856994374 LEYTQVGF 8 Unmodified _LEYTQVGF_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7403564453125 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 79.227 1 79.227 78.727 79.727 0 0 0 0 0.97348 1 44012 44012 5.7604 0 1 + 31619 21991 20838 21247 37427 37427 -0.014416102307450274 LEYYERAL 8 Unmodified _LEYYERAL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7715454101562 2 528.771657 1055.52876 0.64592 0.00034154 0.1445 7.6405E-05 0.79041 0.00041795 528.7718795697389 81.654 0.36301 81.159 80.95 81.313 -0.4952 35 14 3 0 0 0 0.80311 1 44782 44782 4.756 0.42677 1 2403000 31620 9407 20839 21248 37428 37428 0.00321750206330762 LFAAEPKFIK 10 Unmodified _LFAAEPKFIK_ 0 0 0 REV__ENSG00000176920|ENST00000425340|FUT2 REV__ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3450317382812 2 582.344792 1162.67503 0.76307 0.00044437 -0.70114 -0.00040831 0.061921 3.6059E-05 582.344266653804 61.714 0.64548 61.681 61.514 62.16 -0.032787 115 32 5 0 0 0 0.32072 1 33635 33635 26.268 5.8536 1 439900000 + 31621 22829 20840 21249 37429 37429 0.10020052442200722 LFAAEVWTSCV 11 Unmodified _LFAAEVWTSCV_ 0 0 0 ENST00000371720.5_1_9:139305176-139306478:+|nuORF ENST00000371720.5_1_9:139305176-139306478:+|nuORF ENST00000371720.5_1_9:139305176-139306478:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2981567382812 2 613.299724 1224.5849 1.269 0.0007783 -2.314 -0.0014192 -1.045 -0.00064088 613.2978181470036 63.996 0.25132 63.986 63.845 64.097 -0.010532 21 12 2 0 0 0 0.42108 1 34993 34993 20.415 1.0526 1 12775000 31622 12365 20841 21250 37430 37430 -0.01841364948518276 LFAFLRLAMM 10 Unmodified _LFAFLRLAMM_ 0 0 0 REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.8351440429688 2 606.835223 1211.65589 -0.077644 -4.7117E-05 0.25675 0.0001558 0.1791 0.00010869 607.3371440954819 89.585 0.15649 89.585 89.502 89.659 0 13 10 2 0 0 0 0.71123 1 49554 49554 1.6526 0.17072 1 302740 + 31623 25175 20842 21251 37431 37431 0.05853056555315561 LFAFLRLAMM 10 Unmodified _LFAFLRLAMM_ 0 0 0 REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF REV__ENST00000276410.6_1_8:42611947-42612173:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 606.835223 1211.65589 -0.077644 -4.7117E-05 0.25675 0.0001558 0.1791 0.00010869 607.3371440954819 89.585 0.15649 89.585 89.502 89.659 0 0 0 NaN 1.6526 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 302740 + 31624 25175 20842 21251 0.05853056555315561 LFAFLYRMVI 10 Unmodified _LFAFLYRMVI_ 0 0 0 REV__ENSG00000196935|ENST00000355086|SRGAP1 REV__ENSG00000196935|ENST00000355086|SRGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.9106140136719 3 424.910622 1271.71004 -0.25925 -0.00011016 0.9969 0.0004236 0.73765 0.00031344 424.9110168932046 33.25 0.43517 33.09 32.888 33.323 -0.15918 56 17 5 0 0 0 0.69385 1 17279 17279 3.5871 3.5871 1 45254000 + 31625 23883 20843 21252 37432 37432 0.08504971978527465 LFAGQRMQKI 10 Unmodified _LFAGQRMQKI_ 0 0 0 REV__ENSG00000175029|ENST00000309035|CTBP2 REV__ENSG00000175029|ENST00000309035|CTBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8940124511719 3 397.893742 1190.6594 -0.11203 -4.4577E-05 0.30346 0.00012075 0.19143 7.6169E-05 397.89398678244333 15.979 0.26011 15.984 15.871 16.131 0.0050564 79 22 5 0 0 0 0.67033 1 7950 7950 3.3196 3.3196 1 28665000 + 31626 22832 20844 21253 37433 37433 0.07169442653548685 LFAKLKPRA 9 Unmodified _LFAKLKPRA_ 0 0 0 REV__ENST00000494593.1_1_11:67353853-67354045:+|nuORF REV__ENST00000494593.1_1_11:67353853-67354045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3399658203125 2 522.339844 1042.66514 -0.67603 -0.00035312 0.65938 0.00034442 -0.016655 -8.6995E-06 522.3400007539854 105.96 0.14997 105.91 105.84 105.99 -0.048111 27 14 3 0 0 0 0.61256 1 58716 58716 0.6015 0 1 7937800 + 31627 17732 20845 21254 37434 37434 0.14550909227523334 LFAKTMHHHL 10 Unmodified _LFAKTMHHHL_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 MSMS AL20221201_MKP_PDAC_01 4 412.2226867675781 3 412.22197 1233.64408 NaN NaN NaN NaN NaN NaN NaN 30.013 1 26.516 26.016 27.016 -3.497 0 0 0 0.57227 1 16912 16912 14.957 1.3423 1 + 31628 22669 20846 21255 37435 37435 0.03660575856338255 LFAVLYHF 8 Unmodified _LFAVLYHF_ 0 0 0 REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF REV__ENST00000372921.9_1_10:75148159-75156954:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.2791748046875 2 505.278921 1008.54329 NaN NaN NaN NaN NaN NaN NaN 55.964 1 50.043 49.543 50.543 -5.9211 0 0 0 0.48318 1 35670 35670 41.817 7.6299 1 + 31629 26131 20847 21256 37436 37436 0.03935867145139582 LFAVTTPFPQ 10 Unmodified _LFAVTTPFPQ_ 0 0 0 ENST00000348159.8_1_1:156453152-156470609:-|nuORF;ENST00000489057.1_1_1:156469342-156470480:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3043823242188 2 560.8055 1119.59645 0.3065 0.00017189 -2.1934 -0.0012301 -1.8869 -0.0010582 560.8054838795655 51.326 0.87557 51.272 50.901 51.777 -0.053875 128 43 4 0 0 0 0.52659 1 27972 27972 17.113 4.8722 1 16848000 31630 12037 20848 21257 37437 37437 0.04143200137127678 LFCETCDML 9 Unmodified _LFCETCDML_ 0 0 0 ENST00000531498.5_1_11:8665946-8673385:-|nuORF;nc|ENSG00000166436|O15016-3|TRIM66;ENST00000481014.6_1_11:8646046-8673385:-|nuORF;nc|ENSG00000166436|O15016-2|TRIM66;nc|ENSG00000166436|O15016|TRIM66;ENSG00000166436|ENST00000646038|TRIM66 ENST00000531498.5_1_11:8665946-8673385:-|nuORF ENST00000531498.5_1_11:8665946-8673385:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7198486328125 2 537.718864 1073.42317 0.46466 0.00024986 1.5104 0.00081217 1.9751 0.001062 537.7194457946205 74.636 0.35527 74.636 74.448 74.803 0 36 15 3 0 0 0 0.53666 1 41497 41497 5.2307 0 1 3042000 31631 7486 20849 21258 37438 37438 -0.1105999329745373 LFCHYVPRN 9 Unmodified _LFCHYVPRN_ 0 0 0 ENST00000533515.5_1_11:57263521-57267149:-|nuORF;ENST00000278426.7_2_11:57263521-57268513:-|nuORF ENST00000533515.5_1_11:57263521-57267149:-|nuORF ENST00000533515.5_1_11:57263521-57267149:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8192138671875 2 574.787118 1147.55968 0.6672 0.0003835 -1.8886 -0.0010855 -1.2214 -0.00070205 575.2869217152212 83.622 0.21207 83.124 83.007 83.219 -0.49751 13 8 2 0 0 0 0.21242 1 45779 45779 5.2307 2.3415 1 458570 31632 11398 20850 21259 37439 37439 -0.008193749604288314 LFCSKPHP 8 Unmodified _LFCSKPHP_ 0 0 0 ENST00000356641.7_2_11:120207751-120207811:+|nuORF ENST00000356641.7_2_11:120207751-120207811:+|nuORF ENST00000356641.7_2_11:120207751-120207811:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7394409179688 2 464.739105 927.463658 1.4025 0.0006518 -0.41391 -0.00019236 0.98859 0.00045944 464.73889927345135 41.779 0.64273 37.171 36.894 37.536 -4.6079 97 40 4 0 0 0 0.78809 1 25274 25274 9.3831 9.3831 1 13734000 31633 12094 20851 21260 37440 37440 -0.002975228005198005 LFCTAVLR 8 Unmodified _LFCTAVLR_ 0 0 0 ENST00000311661.4_2_17:77020401-77042770:+|nuORF;ENST00000339142.6_2_17:77020254-77040169:+|nuORF ENST00000311661.4_2_17:77020401-77042770:+|nuORF ENST00000311661.4_2_17:77020401-77042770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7663269042969 2 461.762581 921.510608 0.31167 0.00014392 -2.7323 -0.0012617 -2.4206 -0.0011177 461.7613340841554 73.224 0.54314 73.266 73.108 73.651 0.041725 57 24 3 0 0 0 0.5284 1 40473 40473 32.117 0 1 12896000 31634 11695 20852 21261 37441 37441 0.04671336750618593 LFCTGKVYY 9 Unmodified _LFCTGKVYY_ 0 0 0 nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH nc|ENSG00000105953|Q02218-2|OGDH nc|ENSG00000105953|Q02218-2|OGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2730712890625 2 547.272978 1092.5314 -0.6033 -0.00033017 -0.60233 -0.00032964 -1.2056 -0.00065981 547.2726874624251 32.103 0.35868 32.103 31.92 32.278 0 37 17 3 0 0 0 0.43463 1 16697 16697 10.824 0 1 2036800 31635 2381 20853 21262 37442 37442 -0.011161176603764034 LFCVFHPS 8 Unmodified _LFCVFHPS_ 0 0 0 ENST00000542068.5_1_2:219460696-219461125:+|nuORF ENST00000542068.5_1_2:219460696-219461125:+|nuORF ENST00000542068.5_1_2:219460696-219461125:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2337341308594 2 475.233656 948.452759 0.47906 0.00022766 -3.5461 -0.0016852 -3.067 -0.0014576 475.23201212508644 63.245 0.26114 62.759 62.603 62.864 -0.48617 18 11 2 0 0 0 0.80624 1 34490 34490 2.8892 0 1 729450 31636 15055 20854 21263 37443 37443 -0.02352925174795928 LFCWECLGEA 10 Unmodified _LFCWECLGEA_ 0 0 0 ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629|ENST00000265742|ANKIB1 ENSG00000001629|ENST00000265742|ANKIB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2251586914062 3 390.836794 1169.48855 0.20443 7.9898E-05 2.5714 0.001005 2.7758 0.0010849 391.17211901643304 74.029 0.15321 74.073 74.006 74.159 0.043983 9 6 2 0 0 0 0.23986 1 40824 40824 0.69767 0 1 760450 31637 258 20855 21264 37444 37444 -0.08941255780086976 LFCYSTRLFF 10 Unmodified _LFCYSTRLFF_ 0 0 0 ENSG00000165548|ENST00000298351|TMEM63C ENSG00000165548|ENST00000298351|TMEM63C ENSG00000165548|ENST00000298351|TMEM63C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8854370117188 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 67.34 1 67.358 66.858 67.858 0.018028 0 0 0 0.9997 1 36965 36965 0.69767 0.24315 1 31638 7359 20856 21265 37445 37445 0.0012721818507088756 LFCYVEILR 9 Unmodified _LFCYVEILR_ 0 0 0 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 ENSG00000173578|ENST00000309285|XCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8793640136719 3 385.87921 1154.6158 -0.37105 -0.00014318 0.96457 0.00037221 0.59352 0.00022903 385.8795528893484 22.509 0.20918 22.509 22.402 22.611 0 20 9 3 0 0 0 0.52067 1 11452 11452 3.8763 0 1 814410 31639 8342 20857 21266 37446 37446 0.04467833156400047 LFDAGTSSF 9 Unmodified _LFDAGTSSF_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.4360961914062 1 944.435989 943.428712 0.19058 0.00017999 -1.019 -0.00096243 -0.82847 -0.00078244 944.4349239994108 58.483 0.18727 57.992 57.883 58.07 -0.49079 12 8 2 0 0 0 0.2001 1 31804 31804 23.148 7.3802 1 1274700 31640 4180 20858 21267 37447 37447 -0.04526487127463952 LFDARSLQARW 11 Unmodified _LFDARSLQARW_ 0 0 0 REV__ENST00000356634.7_1_1:23357106-23376927:+|nuORF REV__ENST00000356634.7_1_1:23357106-23376927:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.9149475097656 3 454.914083 1361.72042 0.084612 3.8491E-05 -0.26133 -0.00011888 -0.17671 -8.0389E-05 454.9139440141753 51.327 0.3338 51.273 51.087 51.421 -0.053871 56 16 4 0 0 0 0.631 1 27719 27719 9.7643 1.0125 1 57065000 + 31641 25827 20859 21268 37448 37448 0.054026709573236076 LFDARSLQARW 11 Unmodified _LFDARSLQARW_ 0 0 0 REV__ENST00000356634.7_1_1:23357106-23376927:+|nuORF REV__ENST00000356634.7_1_1:23357106-23376927:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.9135437011719 3 454.914083 1361.72042 0.6074 0.00027631 0.11166 5.0798E-05 0.71906 0.00032711 454.91418183669435 78.131 1.0395 71.955 71.428 72.468 -6.1757 92 61 2 0 0 0 0.631 2 51175 51042;51175 9.7643 1.8189 1 50630000 + 31642 25827 20859 21268 37449;37450 37450 0.054026709573236076 LFDATLTQY 9 Unmodified _LFDATLTQY_ 0 0 0 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2723388671875 2 536.27149 1070.52843 0.11412 6.1197E-05 0.66948 0.00035902 0.78359 0.00042022 536.2721515533412 66.563 0.24638 66.08 65.925 66.171 -0.48323 23 11 3 0 0 0 0.14602 1 36364 36364 28.487 17.372 1 2155600 31643 1147 20860 21269 37451 37451 -0.0040166951350784075 LFDAVIRL 8 Unmodified _LFDAVIRL_ 0 0 0 nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7902221679688 2 473.789653 945.564752 0.11586 5.4895E-05 -0.26652 -0.00012627 -0.15066 -7.1379E-05 473.7895125213825 77.654 0.3082 77.704 77.533 77.841 0.05011 32 12 3 0 0 0 0.17954 2 42810 42810;42916 78.149 9.694 1 15132000 31644 2797 20861 21270 37452;37453 37452 0.08979252173844543 LFDDIDHNM 9 Oxidation (M) _LFDDIDHNM(Oxidation (M))_ LFDDIDHNM(1) LFDDIDHNM(76) 0 0 1 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.239990234375 2 568.239864 1134.46517 0.46048 0.00026166 -0.87032 -0.00049455 -0.40984 -0.00023289 568.2394336135003 39.251 0.38921 39.251 39.059 39.448 0 55 18 4 0 0 0 0.011671 2 20965 20965;21070 75.761 55.307 1 21948000 31645 10088 20862 21271 37454;37455 37454 1638 -0.09667978293077795 LFDDIDHNM 9 Oxidation (M) _LFDDIDHNM(Oxidation (M))_ LFDDIDHNM(1) LFDDIDHNM(58) 0 0 1 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2392578125 2 568.239864 1134.46517 0.12522 7.1155E-05 -0.17565 -9.9813E-05 -0.050434 -2.8659E-05 568.2400449773588 39.546 0.28031 39.248 39.091 39.371 -0.29716 22 12 3 0 0 0 0.025842 1 20861 20861 57.722 35.975 1 1904900 31646 10088 20862 21271 37456 37456 1638 -0.09667978293077795 LFDDIDHNM 9 Oxidation (M) _LFDDIDHNM(Oxidation (M))_ LFDDIDHNM(1) LFDDIDHNM(110) 0 0 1 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2411499023438 2 568.239864 1134.46517 0.90543 0.0005145 0.43065 0.00024471 1.3361 0.00075921 568.2400167987025 45.682 0.38642 40.727 40.582 40.969 -4.9549 60 25 3 0 0 0 0.0059585 1 28044 28044 114.65 80.547 1 26664000 31647 10088 20862 21271 37457 37457 1638 -0.09667978293077795 LFDDIDHNM 9 Unmodified _LFDDIDHNM_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA;nc|ENSG00000198408|O60502-3|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.24365234375 2 560.242406 1118.47026 1.6452 0.00092171 -0.64703 -0.0003625 0.99816 0.00055921 560.2423121548508 58.75 0.46545 52.675 52.421 52.886 -6.0745 59 25 3 0 0 0 0.0086722 2 37716 37585;37716 88.954 53.403 1 38274000 31648 10088 20862 21272 37458;37459 37459 -0.08423674430446226 LFDEIESHF 9 Unmodified _LFDEIESHF_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7689208984375 2 568.766571 1135.51859 NaN NaN NaN NaN NaN NaN NaN 81.89 1 81.395 80.895 81.895 -0.4952 0 0 0 0.82396 1 44838 44838 4.756 1.8668 1 + 31649 19587 20863 21273 37460 37460 -0.04374857518905628 LFDELSPEFL 10 Unmodified _LFDELSPEFL_ 0 0 0 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 605.3035278320312 2 605.305529 1208.59651 0.51152 0.00030962 -1.3297 -0.00080488 -0.8182 -0.00049526 605.3053398986478 92.299 0.65943 86.124 85.74 86.399 -6.1757 59 39 3 0 0 0 0.21952 1 61189 61189 10.824 0 1 39441000 + 31650 18981 20864 21274 37461 37461 0.0005515534649020992 LFDEREQE 8 Unmodified _LFDEREQE_ 0 0 0 ENSG00000171827|ENST00000330173|ZNF570 ENSG00000171827|ENST00000330173|ZNF570 ENSG00000171827|ENST00000330173|ZNF570 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7492065429688 2 533.246003 1064.47745 0.020419 1.0888E-05 3.1266 0.0016672 3.147 0.0016781 533.2468789198714 60.254 0.21519 59.763 59.63 59.845 -0.49079 20 10 3 0 0 0 0.48669 1 32795 32795 36.044 3.7387 1 5094900 31651 8148 20865 21275 37462 37462 -0.05220618558360002 LFDFATNV 8 Unmodified _LFDFATNV_ 0 0 0 REV__ENST00000368849.7_1_1:151554198-151554447:+|nuORF REV__ENST00000368849.7_1_1:151554198-151554447:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.4611206054688 1 926.46181 925.454533 0.30107 0.00027893 -0.76165 -0.00070564 -0.46058 -0.00042671 926.4613675845233 79.992 0.29376 79.992 79.864 80.158 0 23 16 2 0 0 0 0.79669 1 44388 44388 8.5933 0 1 645910 + 31652 26021 20866 21276 37463 37463 -0.011175928851912431 LFDFGTKLV 9 Unmodified _LFDFGTKLV_ 0 0 0 REV__nc|nan|Q9H425-2|C1orf198 REV__nc|nan|Q9H425-2|C1orf198 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2965698242188 2 520.294768 1038.57498 0.68773 0.00035782 0.80684 0.0004198 1.4946 0.00077762 520.2949563682592 71.635 0.33994 71.674 71.49 71.829 0.039024 41 15 4 0 0 0 0.12424 1 39382 39382 30.637 0 1 20273000 + 31653 19185 20867 21277 37464 37464 0.05723815108422059 LFDFGTKLV 9 Unmodified _LFDFGTKLV_ 0 0 0 REV__nc|nan|Q9H425-2|C1orf198 REV__nc|nan|Q9H425-2|C1orf198 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.294768 1038.57498 0.49196 0.00025597 0.89148 0.00046383 1.3834 0.0007198 520.2954088351187 72.141 0.15845 71.665 71.572 71.73 -0.4761 -0.00426 6.0625E-05 NaN 30.637 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 779680 + 31654 19185 20867 21277 0.05723815108422059 LFDFGTKLV 9 Unmodified _LFDFGTKLV_ 0 0 0 REV__nc|nan|Q9H425-2|C1orf198 REV__nc|nan|Q9H425-2|C1orf198 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.294768 1038.57498 0.68773 0.00035782 0.80684 0.0004198 1.4946 0.00077762 520.2949563682592 71.635 0.33994 71.674 71.49 71.829 0.039024 0.00426 -2.7449E-05 NaN 30.637 41 15 4 NaN NaN NaN NaN 0 NaN NaN 0 20273000 + 31655 19185 20867 21277 0.05723815108422059 LFDGVVCFFL 10 Unmodified _LFDGVVCFFL_ 0 0 0 L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|151|3|anti-sense;chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|19;chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|22 L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|151|3|anti-sense L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|151|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 387.2013854980469 3 387.200061 1158.57835 NaN NaN NaN NaN NaN NaN NaN 77.322 1 71.146 70.646 71.646 -6.1757 0 0 0 0.71851 1 50573 50573 9.544 0 1 31656 83 20868 21278 37465 37465 0.005407418907680039 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.1900329589844 3 355.190553 1062.54983 -0.37367 -0.00013272 0.48629 0.00017273 0.11262 4.0003E-05 355.19065315094304 41.702 0.21212 41.395 41.283 41.495 -0.30682 25 9 3 0 0 0 0.14594 1 22094 22094 21.799 6.551 1 27870000 31657 977 20869 21279 37466 37466 0.021057603058579843 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.28271484375 2 532.282192 1062.54983 -0.40115 -0.00021353 1.0304 0.00054845 0.62923 0.00033493 532.2827791226017 41.692 0.26411 41.385 41.333 41.597 -0.30682 21 12 3 0 0 0 0.012228 1 22111 22111 74.2 38.073 1 8936500 31658 977 20869 21279 37467 37467 0.021057603058579843 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.1905517578125 3 355.190553 1062.54983 -0.18358 -6.5207E-05 -0.40409 -0.00014353 -0.58768 -0.00020874 355.19036322563545 41.393 0.29296 41.391 41.241 41.534 -0.0017929 39 13 4 0 0 0 0.20507 1 22085 22085 17.049 6.2491 1 63799000 31659 977 20869 21279 37468 37468 0.021057603058579843 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2827758789062 2 532.282192 1062.54983 -0.068734 -3.6586E-05 -1.4403 -0.00076665 -1.509 -0.00080324 532.281402436403 41.403 0.2734 41.401 41.261 41.534 -0.0017929 20 12 2 0 0 0 0.0085366 1 22102 22102 90.135 52.161 1 13155000 31660 977 20869 21279 37469 37469 0.021057603058579843 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.1912536621094 3 355.190553 1062.54983 1.0933 0.00038834 0.54883 0.00019494 1.6422 0.00058328 355.1908631386116 46.58 0.29405 41.5 41.359 41.653 -5.0805 134 57 3 0 0 0 0.14594 2 28746 28746;28886 21.799 11 1 121450000 31661 977 20869 21279 37470;37471 37470 0.021057603058579843 LFDHAVSKF 9 Unmodified _LFDHAVSKF_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2828979492188 2 532.282192 1062.54983 0.37518 0.0001997 -0.061396 -3.268E-05 0.31378 0.00016702 532.2818876702632 46.571 0.24096 41.49 41.372 41.613 -5.0805 82 47 3 0 0 0 0.047714 1 28749 28749 45.74 23.004 1 70449000 31662 977 20869 21279 37472 37472 0.021057603058579843 LFDHQQRRQVF 11 Unmodified _LFDHQQRRQVF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 737.8928833007812 2 737.389116 1472.76368 0.9272 0.00068371 1.7102 0.0012611 2.6374 0.0019448 737.3906842523934 52.472 0.21874 52.413 52.267 52.486 -0.058918 30 10 4 0 0 0 0.65108 1 28390 28390 8.7454 1.6437 1 6616300 31663 1104 20870 21280 37473 37473 0.04620860734598864 LFDHQQRRQVF 11 Unmodified _LFDHQQRRQVF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 737.3907470703125 2 737.389116 1472.76368 0.91463 0.00067444 0.71203 0.00052504 1.6267 0.0011995 737.8910413927928 74.708 0.56255 68.533 68.328 68.89 -6.1757 38 29 2 0 0 0 0.21511 1 48837 48837 31.268 4.0451 1 10300000 31664 1104 20870 21280 37474 37474 0.04620860734598864 LFDIEQVL 8 Unmodified _LFDIEQVL_ 0 0 0 REV__ENSG00000161850|ENST00000257974|KRT82 REV__ENSG00000161850|ENST00000257974|KRT82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2699584960938 2 488.771126 975.527698 0.24648 0.00012047 -1.4663 -0.00071666 -1.2198 -0.00059619 488.7713300296405 78.819 0.53738 78.333 78.059 78.596 -0.48595 30 21 2 0 0 0 0.77907 1 43255 43255 10.183 0 1 974310 + + 31665 16890 20871 21281 37475 37475 0.038955358374209936 LFDITGQDF 9 Unmodified _LFDITGQDF_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2559814453125 2 528.25584 1054.49713 0.40522 0.00021406 0.9014 0.00047617 1.3066 0.00069023 528.2561001649858 79.14 0.37522 79.14 78.951 79.326 0 37 16 3 0 0 0 0.2001 1 43964 43964 23.148 5.0134 1 3117600 31666 2488 20872 21282 37476 37476 -0.027942425476112476 LFDITGQDF 9 Unmodified _LFDITGQDF_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2560424804688 2 528.25584 1054.49713 0.91842 0.00048516 -0.5749 -0.00030369 0.34352 0.00018146 528.2552768192639 79.662 0.44518 79.173 79.008 79.454 -0.48933 42 19 3 0 0 0 0.087258 1 43613 43613 36.044 14.298 1 12989000 31667 2488 20872 21282 37477 37477 -0.027942425476112476 LFDITGQDF 9 Unmodified _LFDITGQDF_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.25732421875 2 528.25584 1054.49713 1.1863 0.00062669 0.055003 2.9056E-05 1.2413 0.00065574 528.2560573745914 87.757 0.55378 81.581 81.296 81.85 -6.1757 69 30 3 0 0 0 0.16226 2 57952 57826;57952 26.884 12.045 1 70210000 31668 2488 20872 21282 37478;37479 37479 -0.027942425476112476 LFDKSINEF 9 Unmodified _LFDKSINEF_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.78466796875 2 556.784764 1111.55498 0.33172 0.0001847 -0.36096 -0.00020098 -0.029232 -1.6276E-05 556.7841987380232 54.834 0.2216 54.367 54.261 54.482 -0.46664 25 10 3 0 0 0 0.044011 1 29734 29734 47.749 3.9763 1 7463900 31669 6174;13900 20873 21283 37480 37480 0.0036601937779323634 LFDKSINEF 9 Unmodified _LFDKSINEF_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7860107421875 2 556.784764 1111.55498 1.2546 0.00069856 0.939 0.00052282 2.1936 0.0012214 556.7850292378691 61.623 0.27123 55.447 55.228 55.499 -6.1757 22 13 2 0 0 0 0.013609 1 39660 39660 70.332 26.474 1 15674000 31670 6174;13900 20873 21283 37481 37481 0.0036601937779323634 LFDKSINEF 9 Unmodified _LFDKSINEF_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.784764 1111.55498 1.0704 0.00059599 -0.20266 -0.00011284 0.86776 0.00048316 556.7856836518986 54.307 0.22525 54.307 54.173 54.398 0 -0.030306 7.0241E-05 NaN 47.749 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1314400 31671 6174;13900 20873 21283 0.0036601937779323634 LFDKSINEF 9 Unmodified _LFDKSINEF_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25;ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENSG00000152253|ENST00000282074|SPC25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.784764 1111.55498 -0.39704 -0.00022107 -0.17071 -9.5048E-05 -0.56775 -0.00031612 556.7852593213273 55.562 0.11121 55.562 55.461 55.573 0 0.057377 -0.0010708 NaN 70.332 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1325000 31672 6174;13900 20873 21283 0.0036601937779323634 LFDLEKVSF 9 Unmodified _LFDLEKVSF_ 0 0 0 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.7413940429688 2 549.297507 1096.58046 0.68082 0.00037397 1.6484 0.00090549 2.3293 0.0012795 549.799539181758 63.13 0.39696 56.955 56.78 57.177 -6.1757 35 21 3 0 0 0 0.18521 1 40773 40773 16.942 1.0951 1 52890000 31673 677 20874 21284 37482 37482 0.03603493900232024 LFDLGGQYL 9 Unmodified _LFDLGGQYL_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2691650390625 2 513.26875 1024.52295 0.3915 0.00020094 0.11724 6.0177E-05 0.50874 0.00026112 513.2688086908977 86.451 0.39645 85.947 85.769 86.165 -0.50318 40 16 3 0 0 0 0.37804 2 47246 47246;47351 13.508 2.3934 1 1896700 31674 8873 20875 21285 37483;37484 37483 0.011666516946661432 LFDLVCEHL 9 Carbamidomethyl (C) _LFDLVC(Carbamidomethyl (C))EHL_ LFDLVC(1)EHL LFDLVC(55)EHL 0 1 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7903442382812 2 573.286617 1144.55868 0.86164 0.00049397 0.046486 2.665E-05 0.90813 0.00052062 573.2866063833609 74.015 0.32879 73.539 73.362 73.69 -0.47588 36 15 3 0 0 0 0.031062 1 40464 40464 54.774 31.625 1 4266500 31675 1487 20876 21286 37485 37485 141 -0.007816341199941235 LFDLVCEHL 9 Carbamidomethyl (C) _LFDLVC(Carbamidomethyl (C))EHL_ LFDLVC(1)EHL LFDLVC(85)EHL 0 1 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.287353515625 2 573.286617 1144.55868 1.2998 0.00074517 0.2017 0.00011563 1.5015 0.00086081 573.2865047885734 87.881 0.7514 81.705 81.277 82.029 -6.1757 90 41 3 0 0 0 0.0090851 3 57797 57797;57926;58072 85.357 31.781 1 36917000 31676 1487 20876 21286 37486;37487;37488 37486 141 -0.007816341199941235 LFDLVCHEF 9 Carbamidomethyl (C) _LFDLVC(Carbamidomethyl (C))HEF_ LFDLVC(1)HEF LFDLVC(74)HEF 0 1 0 ENSG00000166788|ENST00000524803|SAAL1;ENST00000531216.1_1_11:18105066-18108741:-|nuORF ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2793579101562 2 590.278792 1178.54303 0.71549 0.00042234 -0.027027 -1.5954E-05 0.68846 0.00040638 590.2788847329372 74.604 0.41605 74.128 73.91 74.326 -0.47588 68 17 5 0 0 0 0.012148 2 40883 40784;40883 74.423 53.969 1 15378000 31677 7530 20877 21287 37489;37490 37490 727 -0.0390992063705653 LFDLVCHEF 9 Carbamidomethyl (C) _LFDLVC(Carbamidomethyl (C))HEF_ LFDLVC(1)HEF LFDLVC(64)HEF 0 1 0 ENSG00000166788|ENST00000524803|SAAL1;ENST00000531216.1_1_11:18105066-18108741:-|nuORF ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2784423828125 2 590.278792 1178.54303 0.28789 0.00016994 0.81255 0.00047963 1.1004 0.00064957 590.2793443466669 74.096 0.33568 74.14 73.943 74.279 0.043976 42 14 4 0 0 0 0.019303 1 40800 40800 64.236 44.874 1 9922400 31678 7530 20877 21287 37491 37491 727 -0.0390992063705653 LFDLVCHEF 9 Carbamidomethyl (C) _LFDLVC(Carbamidomethyl (C))HEF_ LFDLVC(1)HEF LFDLVC(93)HEF 0 1 0 ENSG00000166788|ENST00000524803|SAAL1;ENST00000531216.1_1_11:18105066-18108741:-|nuORF ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2794189453125 2 590.278792 1178.54303 0.93464 0.0005517 0.31551 0.00018624 1.2502 0.00073794 590.2788955164165 89.913 0.96629 83.737 83.22 84.186 -6.1757 103 54 2 0 0 0 0.0082281 4 59127 59127;59264;59382;59508 104.8 104.8 1 78716000 31679 7530 20877 21287 37492;37493;37494;37495 37492 727 -0.0390992063705653 LFDQYKII 8 Unmodified _LFDQYKII_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MSMS AL20221201_MKP_PDAC_01 4 520.2949829101562 2 520.294768 1038.57498 NaN NaN NaN NaN NaN NaN NaN 84.46 1 78.284 77.784 78.784 -6.1757 0 0 0 0.35317 1 55564 55564 58.679 3.9053 1 31680 9633 20878 21288 37496 37496 0.057238151084447964 LFDRRRWSFWW 11 Unmodified _LFDRRRWSFWW_ 0 0 0 REV__ENSG00000132793|ENST00000373257|LPIN3 REV__ENSG00000132793|ENST00000373257|LPIN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3046264648438 3 552.28451 1653.8317 0.87108 0.00048108 -4.1341 -0.0022832 -3.2631 -0.0018021 552.6171018136167 47.266 0.20375 47.228 47.157 47.361 -0.038643 16 9 2 0 0 0 0.30599 1 25444 25444 0.50596 0.41111 1 948170 + 31681 19881 20879 21289 37497 37497 0.03093730385262461 LFDSSHNPPL 10 Unmodified _LFDSSHNPPL_ 0 0 0 REV__nc|ENSG00000136146|Q9NPJ6-2|MED4 REV__nc|ENSG00000136146|Q9NPJ6-2|MED4 MSMS AL20221201_MKP_PDAC_01 4 375.8542175292969 3 376.189101 1125.54547 NaN NaN NaN NaN NaN NaN NaN 19.146 1 16.49 15.99 16.99 -2.6564 0 0 0 0.96981 1 10120 10120 1.9064 0 1 + 31682 20140 20880 21290 37498 37498 -0.012277489077177961 LFDSTEMHLH 10 Unmodified _LFDSTEMHLH_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.7547607421875 2 615.284605 1228.55466 0.95886 0.00058997 -0.92024 -0.00056621 0.03862 2.3762E-05 615.2848509461022 63.558 0.26631 63.547 63.453 63.719 -0.010532 25 12 3 0 0 0 0.23227 1 34752 34752 10.824 1.4408 1 2901100 + 31683 18791 20881 21291 37499 37499 -0.05047723613688504 LFDSTLTAF 9 Unmodified _LFDSTLTAF_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869 ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7620849609375 2 507.760758 1013.50696 0.28039 0.00014237 -0.78134 -0.00039673 -0.50095 -0.00025436 507.7614415370467 82.52 0.31358 82.025 81.843 82.156 -0.4952 19 12 2 0 0 0 0.48152 1 45213 45213 8.5933 0 1 1486300 31684 8625 20882 21292 37500 37500 0.0007494545775443839 LFDSTLTAF 9 Unmodified _LFDSTLTAF_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869 ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7608642578125 2 507.760758 1013.50696 0.863 0.0004382 -0.33338 -0.00016928 0.52962 0.00026892 507.76040493050044 91.021 0.56838 84.845 84.577 85.145 -6.1757 59 33 2 0 0 0 0.12841 1 60071 60071 30.225 8.4782 1 15784000 31685 8625 20882 21292 37501 37501 0.0007494545775443839 LFDSVIHL 8 Unmodified _LFDSVIHL_ 0 0 0 ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2654418945312 2 472.26601 942.517468 0.63203 0.00029849 0.044756 2.1137E-05 0.67679 0.00031962 472.26598997231144 75.764 0.30917 75.287 75.148 75.457 -0.47714 18 13 2 0 0 0 0.32412 1 41456 41456 52.693 12.244 1 3496900 31686 3729 20883 21293 37502 37502 0.04390972902854173 LFDSVIHL 8 Unmodified _LFDSVIHL_ 0 0 0 ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2666015625 2 472.26601 942.517468 0.13598 6.4218E-05 1.2873 0.00060795 1.4233 0.00067217 472.26638750237555 75.319 0.26891 75.364 75.183 75.452 0.045959 20 12 2 0 0 0 0.41521 1 41518 41518 42.968 2.5194 1 2300900 31687 3729 20883 21293 37503 37503 0.04390972902854173 LFDSVIHL 8 Unmodified _LFDSVIHL_ 0 0 0 ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2670593261719 2 472.26601 942.517468 1.0567 0.00049902 1.1609 0.00054825 2.2175 0.0010473 472.26699629166694 91.726 0.65771 85.551 85.165 85.823 -6.1757 54 36 2 0 0 0 0.24182 1 60713 60713 63.394 3.5985 1 8392500 31688 3729 20883 21293 37504 37504 0.04390972902854173 LFDTTQWL 8 Unmodified _LFDTTQWL_ 0 0 0 REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF REV__ENST00000478691.5_1_1:23645184-23648146:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2630004882812 2 512.260925 1022.5073 0.64762 0.00033175 0.1628 8.3395E-05 0.81042 0.00041514 512.2612852327115 67.193 0.55949 61.017 60.808 61.368 -6.1757 60 22 3 0 0 0 0.58902 1 43715 43715 26.884 2.8631 1 43301000 + 31689 27640 20884 21294 37505 37505 -0.0030563482238221695 LFDVEDAIL 9 Unmodified _LFDVEDAIL_ 0 0 0 REV__nc|ENSG00000081913|O60346-2|PHLPP1 REV__nc|ENSG00000081913|O60346-2|PHLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7714233398438 2 517.773865 1033.53318 1.1232 0.00058156 -1.0054 -0.00052057 0.11779 6.0989E-05 517.7732503931003 88.992 0.96096 82.816 82.221 83.182 -6.1757 175 53 4 0 0 0 0.087258 1 58358 58358 36.044 0 1 303400000 + 31690 17698 20885 21295 37506 37506 0.017752146292423276 LFDVHTTL 8 Unmodified _LFDVHTTL_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2542419433594 2 473.255643 944.496732 0.46184 0.00021857 -1.3885 -0.00065712 -0.92666 -0.00043855 473.2549003291126 57.831 0.26584 57.341 57.226 57.492 -0.48974 20 12 2 0 0 0 0.19792 1 31429 31429 70.716 23.795 1 2582800 31691 9979 20886 21296 37507 37507 0.022263825232016643 LFDVHTTL 8 Unmodified _LFDVHTTL_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.25634765625 2 473.255643 944.496732 1.4109 0.00066771 0.87247 0.0004129 2.2833 0.0010806 473.25601798943836 64.239 0.39932 58.064 57.899 58.298 -6.1757 30 20 2 0 0 0 0.18881 1 41669 41669 74.396 17.855 1 10279000 31692 9979 20886 21296 37508 37508 0.022263825232016643 LFDWLQEEE 9 Unmodified _LFDWLQEEE_ 0 0 0 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.7770385742188 2 604.777136 1207.53972 NaN NaN NaN NaN NaN NaN NaN 70.817 1 70.34 69.84 70.84 -0.47735 0 0 0 0.67877 1 38749 38749 10.074 0 1 + 31693 29850 20887 21297 37509 37509 -0.055748922100292475 LFEAWKKE 8 Unmodified _LFEAWKKE_ 0 0 0 ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000433355.6_1_6:146231577-146267398:-|nuORF ENSG00000146414|ENST00000275233|SHPRH ENSG00000146414|ENST00000275233|SHPRH MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8586120605469 3 350.858804 1049.55458 0.98672 0.0003462 0.96572 0.00033883 1.9524 0.00068503 350.85895937044927 39.998 1.2501 35.469 35.216 36.466 -4.5294 217 89 4 0 0 0 0.78849 1 23700 23700 6.7232 0 1 580480000 31694 5777 20888 21298 37510 37510 0.031786444485987886 LFEEFGQI 8 Unmodified _LFEEFGQI_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 983.4908447265625 1 982.488024 981.480748 -0.052153 -5.1239E-05 0.64212 0.00063087 0.58996 0.00057963 982.4877593255395 65.754 0.14447 65.269 65.169 65.314 -0.48428 8 5 2 0 0 0 0.79669 1 35877 35877 8.5933 0 1 952090 31695 10419 20889 21299 37511 37511 -0.010733237136946627 LFEEIVGNYE 10 Unmodified _LFEEIVGNYE_ 0 0 0 REV__ENST00000492587.5_1_1:201958137-201969135:+|nuORF REV__ENST00000492587.5_1_1:201958137-201969135:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8633422851562 3 404.864283 1211.57102 NaN NaN NaN NaN NaN NaN NaN 31.037 1 31.037 30.537 31.537 0 0 0 0 0.97302 1 16152 16152 1.7423 0.41263 1 + 31696 22927 20890 21300 37512 37512 -0.026303191759552647 LFEEQQAF 8 Unmodified _LFEEQQAF_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L nc|ENSG00000116580|Q3T8J9-3|GON4L nc|ENSG00000116580|Q3T8J9-3|GON4L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2427062988281 2 506.242732 1010.47091 NaN NaN NaN NaN NaN NaN NaN 54.314 1 53.848 53.348 54.348 -0.46664 0 0 0 0.94749 1 29430 29430 11.114 0 1 31697 3229 20891 21301 37513 37513 -0.03390511719089773 LFEFNTETI 9 Unmodified _LFEFNTETI_ 0 0 0 REV__ENSG00000240720|ENST00000458448|LRRD1 REV__ENSG00000240720|ENST00000458448|LRRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2758178710938 2 557.276772 1112.53899 0.32426 0.00018071 -0.62587 -0.00034878 -0.3016 -0.00016808 557.2764404764106 70.067 0.23872 70.067 69.964 70.203 0 69 44 2 0 0 0 0.48152 1 39106 39106 8.5933 0 1 4929100 + 31698 24444 20892 21302 37514 37514 -0.012776868590890444 LFEGDPGILY 10 Unmodified _LFEGDPGILY_ 0 0 0 REV__ENSG00000133028|ENST00000255390|SCO1 REV__ENSG00000133028|ENST00000255390|SCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2882690429688 2 562.28714 1122.55973 0.7741 0.00043527 0.3436 0.0001932 1.1177 0.00062847 562.7887398154307 47.773 0.95811 47.773 47.212 48.17 0 134 45 4 0 0 0 0.31022 1 26363 26363 26.884 0.61551 1 57658000 + 31699 19899 20893 21303 37515 37515 0.0033490352059288853 LFEILIEQI 9 Unmodified _LFEILIEQI_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MSMS AL20221201_MKP_PDAC_01 4 559.328125 2 559.328808 1116.64306 NaN NaN NaN NaN NaN NaN NaN 20.365 1 17.672 17.172 18.172 -2.693 0 0 0 0.84021 1 10849 10849 0.52476 0.066424 1 31700 10109 20894 21304 37516 37516 0.08940639968432151 LFEINTIRF 9 Unmodified _LFEINTIRF_ 0 0 0 REV__nc|ENSG00000176040|Q7RTY8-2|TMPRSS7 REV__nc|ENSG00000176040|Q7RTY8-2|TMPRSS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8237915039062 2 576.824224 1151.63389 -0.13595 -7.8419E-05 0.71264 0.00041107 0.57669 0.00033265 576.8247345976383 76.904 0.37118 76.424 76.235 76.606 -0.47945 41 16 4 0 0 0 0.58865 1 42174 42174 2.0598 0 1 1885700 + 31701 22906 20895 21305 37517 37517 0.06414291402757044 LFELHRKEEEL 11 Unmodified _LFELHRKEEEL_ 0 0 0 REV__nc|ENSG00000104892|Q6P597-2|KLC3 REV__nc|ENSG00000104892|Q6P597-2|KLC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.5933227539062 3 481.592786 1441.75653 1.3058 0.00062888 -1.2134 -0.00058438 0.092419 4.4509E-05 481.5926719173764 40.858 0.48055 36.261 36.015 36.495 -4.5968 98 29 4 0 0 0 0.69509 1 24345 24345 4.7159 0 1 126460000 + 31702 18385 20896 21306 37518 37518 0.053320833435691384 LFELQSPSTKL 11 Unmodified _LFELQSPSTKL_ 0 0 0 ENST00000590252.2_1_19:1508603-1508663:+|nuORF ENST00000590252.2_1_19:1508603-1508663:+|nuORF ENST00000590252.2_1_19:1508603-1508663:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5704956054688 3 421.571211 1261.6918 NaN NaN NaN NaN NaN NaN NaN 15.763 1 15.768 15.268 16.268 0.005477 0 0 0 0.9385 1 7871 7871 3.5927 0.52041 1 31703 15682 20897 21307 37519 37519 0.07142508537504 LFELSCHTI 9 Unmodified _LFELSCHTI_ 0 0 0 REV__ENST00000468586.5_1_1:62149195-62160394:-|nuORF REV__ENST00000468586.5_1_1:62149195-62160394:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 531.7653198242188 2 531.76806 1061.52157 NaN NaN NaN NaN NaN NaN NaN 74.575 1 68.4 67.9 68.9 -6.1757 0 0 0 0.10545 1 48756 48756 42.095 0.25493 1 + 31704 27457 20898 21308 37520 37520 -0.006733056657367342 LFEQYFII 8 Unmodified _LFEQYFII_ 0 0 0 REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 MSMS AL20221201_MKP_PDAC_01 4 536.7894897460938 2 536.789318 1071.56408 NaN NaN NaN NaN NaN NaN NaN 101.6 1 95.421 94.921 95.921 -6.1757 0 0 0 0.63034 1 68177 68177 32.117 13.982 1 + 31705 18353 20899 21309 37521 37521 0.031164127341526182 LFESNVFSF 9 Unmodified _LFESNVFSF_ 0 0 0 REV__ENSG00000166501|ENST00000643927|PRKCB REV__ENSG00000166501|ENST00000643927|PRKCB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7396240234375 2 545.266207 1088.51786 0.22428 0.00012229 0.65185 0.00035543 0.87613 0.00047772 545.2665874882174 80.066 0.30267 80.066 80.013 80.316 0 21 15 2 0 0 0 0.20528 1 44588 44588 8.5933 0 1 778500 + 31706 22127 20900 21310 37522 37522 -0.022856521679386788 LFETESQTY 9 Unmodified _LFETESQTY_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.254638671875 2 559.256037 1116.49752 1.0324 0.00057736 -2.2025 -0.0012317 -1.1701 -0.00065438 559.2540587293825 46.263 0.35238 46.263 46.108 46.461 0 25 16 2 0 0 0 0.48152 1 25258 25258 8.5933 1.8701 1 4646600 + 31707 24033 20901 21311 37523 37523 -0.056068676184168 LFETESQTY 9 Unmodified _LFETESQTY_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.256037 1116.49752 0.78361 0.00043824 -3.023 -0.0016906 -2.2393 -0.0012524 559.2543291350695 46.619 0.27425 46.282 46.149 46.424 -0.33664 0.0093638 -0.0001728 NaN 8.5933 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3417400 + 31708 24033 20901 21311 -0.056068676184168 LFEVAIRGF 9 Unmodified _LFEVAIRGF_ 0 0 0 REV__ENST00000490008.1_1_3:149469904-149470237:-|nuORF REV__ENST00000490008.1_1_3:149469904-149470237:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 526.3013916015625 2 526.300384 1050.58622 NaN NaN NaN NaN NaN NaN NaN 95.891 1 89.715 89.215 90.215 -6.1757 0 0 0 0.19623 1 63528 63528 26.884 1.4843 1 + 31709 18930 20902 21312 37524 37524 0.06294637202563536 LFEYDPDY 8 Unmodified _LFEYDPDY_ 0 0 0 REV__nc|ENSG00000107263|Q13905|RAPGEF1 REV__nc|ENSG00000107263|Q13905|RAPGEF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3032836914062 2 531.226748 1060.43894 0.62835 0.0003338 -1.4741 -0.00078308 -0.84575 -0.00044928 531.2257575907988 84.338 0.4202 78.162 77.93 78.35 -6.1757 35 23 2 0 0 0 8.7369 1 55562 55562 10.183 0 1 13104000 + 31710 29557 20903 21313 37525 37525 -0.088859241928958 LFEYLHESLY 10 Unmodified _LFEYLHESLY_ 0 0 0 ENSG00000166211|ENST00000551346|SPIC ENSG00000166211|ENST00000551346|SPIC ENSG00000166211|ENST00000551346|SPIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.8836975097656 3 438.551928 1312.63395 -0.46033 -0.00020188 -1.601 -0.00070214 -2.0614 -0.00090402 438.88564547296323 19.958 0.12334 19.986 19.921 20.044 0.028355 14 6 3 0 0 0 0.65023 1 10083 10083 8.4443 5.372 1 959190 31711 7452 20904 21314 37526 37526 -0.009857533878857794 LFEYLHESLY 10 Unmodified _LFEYLHESLY_ 0 0 0 ENSG00000166211|ENST00000551346|SPIC ENSG00000166211|ENST00000551346|SPIC ENSG00000166211|ENST00000551346|SPIC MSMS AL20221201_MKP_PDAC_01 4 438.5517272949219 3 438.551928 1312.63395 NaN NaN NaN NaN NaN NaN NaN 23.032 1 20.253 19.753 20.753 -2.7784 0 0 0 0.72101 1 12435 12435 15.739 7.4522 1 31712 7452 20904 21314 37527 37527 -0.009857533878857794 LFFAGESLLC 10 Unmodified _LFFAGESLLC_ 0 0 0 REV__ENST00000367097.7_1_6:158734075-158734342:+|nuORF REV__ENST00000367097.7_1_6:158734075-158734342:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2797241210938 2 550.27826 1098.54197 NaN NaN NaN NaN NaN NaN NaN 85.111 1 85.175 84.675 85.675 0.063171 0 0 0 0.83398 1 47114 47114 10.824 2.2306 1 + 31713 25973 20905 21315 37528 37528 -0.0033613500593219214 LFFCHGLTDF 10 Unmodified _LFFCHGLTDF_ 0 0 0 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MSMS AL20221201_MKP_PDAC_01 4 600.2792358398438 2 600.281334 1198.54812 NaN NaN NaN NaN NaN NaN NaN 52.916 1 47.112 46.612 47.612 -5.8042 0 0 0 0.24983 1 33410 33410 39.957 0.0076237 1 + 31714 20032 20906 21316 37529 37529 -0.04321616774427639 LFFCKKALHL 10 Unmodified _LFFCKKALHL_ 0 0 0 REV__nc|ENSG00000188554|Q14596-2|NBR1 REV__nc|ENSG00000188554|Q14596-2|NBR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.239990234375 3 407.23885 1218.69472 0.2886 0.00011753 -0.21196 -8.6318E-05 0.07664 3.1211E-05 407.23906184124274 14.716 0.13979 12.213 12.127 12.267 -2.5029 39 22 2 0 0 0 0.67046 1 7463 7463 6.1918 1.4759 1 7368400 + 31715 29863 20907 21317 37530 37530 0.09412105181331754 LFFDYRSF 8 Unmodified _LFFDYRSF_ 0 0 0 REV__ENSG00000124449|ENST00000244314|IRGC REV__ENSG00000124449|ENST00000244314|IRGC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7278442382812 2 547.768917 1093.52328 NaN NaN NaN NaN NaN NaN NaN 66.993 1 66.51 66.01 67.01 -0.48323 0 0 0 0.97444 1 36594 36594 2.8892 0 1 + 31716 19446 20908 21318 37531 37531 -0.019739285854939226 LFFELFRC 8 Unmodified _LFFELFRC_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7781372070312 2 537.775688 1073.53682 NaN NaN NaN NaN NaN NaN NaN 67.182 1 66.7 66.2 67.2 -0.48218 0 0 0 0.94061 1 36700 36700 12.532 3.1841 1 31717 10075 20909 21319 37532 37532 0.0029960592210045434 LFFFCGRW 8 Unmodified _LFFFCGRW_ 0 0 0 REV__ENST00000359920.10_1_19:7504684-7504909:+|nuORF REV__ENST00000359920.10_1_19:7504684-7504909:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.263671875 2 538.262748 1074.51094 NaN NaN NaN NaN NaN NaN NaN 85.989 1 86.05 85.55 86.55 0.061638 0 0 0 0.9185 1 47638 47638 17.087 5.9721 1 + 31718 25902 20910 21320 37533 37533 -0.02333243529506035 LFFFFLFFQSF 11 Unmodified _LFFFFLFFQSF_ 0 0 0 ENST00000593993.6_1_19:18197688-18197787:-|nuORF ENST00000593993.6_1_19:18197688-18197787:-|nuORF ENST00000593993.6_1_19:18197688-18197787:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 745.380859375 2 745.381374 1488.7482 NaN NaN NaN NaN NaN NaN NaN 98.593 1 92.417 91.917 92.917 -6.1757 0 0 0 0.69464 1 65421 65421 17.113 0.96379 1 31719 15744 20911 21321 37534 37534 0.023371811648530638 LFFFFYCWT 9 Unmodified _LFFFFYCWT_ 0 0 0 REV__ENST00000375820.8_1_13:110802605-110802710:-|nuORF REV__ENST00000375820.8_1_13:110802605-110802710:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8683471679688 2 637.291171 1272.56779 0.12023 7.662E-05 2.0938 0.0013343 2.214 0.0014109 637.293096392506 75.987 0.35961 75.508 75.325 75.685 -0.47874 28 15 3 0 0 0 0.20528 1 41552 41552 8.5933 4.264 1 762430 + 31720 26214 20912 21322 37535 37535 -0.05759240763654816 LFFFFYCWT 9 Unmodified _LFFFFYCWT_ 0 0 0 REV__ENST00000375820.8_1_13:110802605-110802710:-|nuORF REV__ENST00000375820.8_1_13:110802605-110802710:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8699340820312 2 637.291171 1272.56779 0.20289 0.0001293 3.6369 0.0023177 3.8398 0.002447 637.293663657578 75.531 0.27415 75.579 75.433 75.707 0.047943 16 12 2 0 0 0 0.19298 1 41595 41595 13.508 12.026 1 1600500 + 31721 26214 20912 21322 37536 37536 -0.05759240763654816 LFFFTPLMTL 10 Unmodified _LFFFTPLMTL_ 0 0 0 nc|ENSG00000288460|A0A5F9ZH02|SMIM42 nc|ENSG00000288460|A0A5F9ZH02|SMIM42 nc|ENSG00000288460|A0A5F9ZH02|SMIM42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5596618652344 3 410.559478 1228.6566 NaN NaN NaN NaN NaN NaN NaN 23.311 1 23.311 22.811 23.811 0 0 0 0 0.98692 1 11878 11878 2.086 0 1 31722 16624 20913 21323 37537 37537 0.05142174476031869 LFFIKNFI 8 Unmodified _LFFIKNFI_ 0 0 0 REV__ENST00000437743.1_1_7:64254823-64274514:+|nuORF REV__ENST00000437743.1_1_7:64254823-64274514:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.3206176757812 2 521.310221 1040.60589 NaN NaN NaN NaN NaN NaN NaN 103.71 1 103.67 103.17 104.17 -0.048164 0 0 0 0.97444 1 57595 57595 0.69038 0 1 + 31723 27044 20914 21324 37538 37538 0.0872101321331229 LFFIPFECEI 10 Unmodified _LFFIPFECEI_ 0 0 0 REV__nc|ENSG00000102893|Q93100-4|PHKB REV__nc|ENSG00000102893|Q93100-4|PHKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8806457519531 3 419.878987 1256.61513 1.0017 0.00042061 1.1871 0.00049842 2.1888 0.00091902 419.8797034175481 43.652 0.42956 38.887 38.65 39.079 -4.7648 51 26 3 0 0 0 0.67033 1 26587 26587 5.7834 0 1 14839000 + 31724 18264 20915 21325 37539 37539 -0.002910062833052507 LFFISWITF 9 Unmodified _LFFISWITF_ 0 0 0 REV__ENSG00000171133|ENST00000302681|OR2K2 REV__ENSG00000171133|ENST00000302681|OR2K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.318115234375 2 587.320786 1172.62702 1.0858 0.00063772 -3.7297 -0.0021905 -2.6439 -0.0015528 587.3182941367212 96.977 0.22172 90.802 90.656 90.877 -6.1757 18 12 2 0 0 0 0.14602 1 64294 64294 28.487 2.2187 1 18526000 + 31725 22535 20916 21326 37540 37540 0.04760978522176629 LFFKLSTNY 9 Unmodified _LFFKLSTNY_ 0 0 0 REV__ENSG00000164292|ENST00000379982|RHOBTB3 REV__ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8051147460938 2 566.8055 1131.59645 0.96609 0.00054759 -1.5627 -0.00088576 -0.59663 -0.00033817 566.8043361574064 49.766 0.29212 49.373 49.198 49.49 -0.3923 17 11 2 0 0 0 0.20507 1 26764 26764 30.637 5.2372 1 5968000 + 31726 21898 20917 21327 37541 37541 0.035912001371116276 LFFLELPTLL 10 Unmodified _LFFLELPTLL_ 0 0 0 REV__ENST00000295958.9_2_4:39553614-39553689:-|nuORF REV__ENST00000295958.9_2_4:39553614-39553689:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 603.3601684570312 2 603.36265 1204.71075 NaN NaN NaN NaN NaN NaN NaN 96.876 1 90.7 90.2 91.2 -6.1757 0 0 0 0.71851 1 64199 64199 15.847 0 1 + 31727 25266 20918 21328 37542 37542 0.11658089899219704 LFFLFFEPL 9 Unmodified _LFFLFFEPL_ 0 0 0 ENST00000560311.1_1_14:24634973-24635402:+|nuORF ENST00000560311.1_1_14:24634973-24635402:+|nuORF ENST00000560311.1_1_14:24634973-24635402:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5494689941406 3 391.5512 1171.63177 1.3091 0.00051256 -3.0061 -0.001177 -1.697 -0.00066448 391.5496952214835 21.842 0.45227 19.107 18.882 19.335 -2.7348 42 24 2 0 0 0 0.54444 1 11682 11682 2.7352 0.23671 1 2488800 31728 15309 20919 21329 37543 37543 0.05281862664946857 LFFPLMEI 8 Unmodified _LFFPLMEI_ 0 0 0 ENST00000223095.4_1_7:100781640-100781877:+|nuORF ENST00000223095.4_1_7:100781640-100781877:+|nuORF ENST00000223095.4_1_7:100781640-100781877:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2756652832031 2 505.274989 1008.53543 NaN NaN NaN NaN NaN NaN NaN 21.837 1 21.85 21.35 22.35 0.013796 0 0 0 0.97444 1 11201 11201 2.5775 0 1 31729 11042 20920 21330 37544 37544 0.03149971833352083 LFFQAFRDLAG 11 Unmodified _LFFQAFRDLAG_ 0 0 0 REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.8406982421875 2 642.840405 1283.66626 0.98306 0.00063195 -0.69386 -0.00044604 0.28921 0.00018591 642.8400979997625 91.105 0.23195 91.142 91.012 91.244 0.036499 24 8 4 0 0 0 0.24216 1 50708 50708 29.841 7.1043 1 6086100 + 31730 19217 20921 21331 37545 37545 0.03577078805756173 LFFQAFRDLAG 11 Unmodified _LFFQAFRDLAG_ 0 0 0 REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 642.840405 1283.66626 0.98306 0.00063195 -0.69386 -0.00044604 0.28921 0.00018591 642.8400979997625 91.105 0.23195 91.142 91.012 91.244 0.036499 0 0 NaN 29.841 24 8 4 NaN NaN NaN NaN 0 NaN NaN 0 6086100 + 31731 19217 20921 21331 0.03577078805756173 LFFQYLHPLRS 11 Unmodified _LFFQYLHPLRS_ 0 0 0 ENSG00000182489|ENST00000372956|XKRX;nc|ENSG00000182489|Q6PP77-2|XKRX ENSG00000182489|ENST00000372956|XKRX ENSG00000182489|ENST00000372956|XKRX MSMS AL20221201_MKP_PDAC_01 4 710.8887939453125 2 710.890429 1419.76631 NaN NaN NaN NaN NaN NaN NaN 98.655 1 92.479 91.979 92.979 -6.1757 0 0 0 0.30911 1 65475 65475 32.786 10.049 1 31732 9059 20922 21332 37546 37546 0.07321316139541523 LFFRIRPIFVF 11 Unmodified _LFFRIRPIFVF_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MSMS AL20221201_MKP_PDAC_01 4 727.9376220703125 2 727.937183 1453.85981 NaN NaN NaN NaN NaN NaN NaN 101.64 1 95.466 94.966 95.966 -6.1757 0 0 0 0.9385 1 68215 68215 3.5965 0 1 31733 4650 20923 21333 37547 37547 0.15103660312593092 LFFRKVYHL 9 Unmodified _LFFRKVYHL_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.24072265625 3 408.241359 1221.70225 NaN NaN NaN NaN NaN NaN NaN 104.61 1 104.56 104.06 105.06 -0.048737 0 0 0 0.86004 1 58081 58081 0.26902 0 1 31734 2142 20924 21334 37548 37548 0.10026580773273963 LFFTPNKW 8 Unmodified _LFFTPNKW_ 0 0 0 REV__nc|ENSG00000164362|O14746-3|TERT REV__nc|ENSG00000164362|O14746-3|TERT MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.78173828125 2 526.781828 1051.5491 1.0899 0.00057412 0.79391 0.00041822 1.8838 0.00099233 526.7820570843385 87.433 1.0859 81.257 80.643 81.729 -6.1757 105 59 2 0 0 0 0.50586 1 57309 57309 34.187 3.5508 1 24315000 + 31735 21912 20925 21335 37549 37549 0.02538965656799519 LFFVIFSSTVL 11 Unmodified _LFFVIFSSTVL_ 0 0 0 REV__ENST00000586685.1_1_17:41365081-41368011:+|nuORF REV__ENST00000586685.1_1_17:41365081-41368011:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8671264648438 2 636.865557 1271.71656 0.40598 0.00025855 1.1402 0.00072614 1.5462 0.0009847 636.8662795156438 36.513 0.39586 32.23 32.094 32.49 -4.2835 37 24 2 0 0 0 0.14064 1 21349 21349 56.177 26.336 1 18829000 + 31736 23458 20926 21336 37550 37550 0.09157188410904382 LFFWAPVPRV 10 Unmodified _LFFWAPVPRV_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2378845214844 3 411.237726 1230.69135 0.14097 5.7972E-05 -0.19475 -8.009E-05 -0.053783 -2.2118E-05 411.2376001283688 39.812 0.62519 39.817 39.483 40.108 0.0050545 71 29 3 0 0 0 0.69377 1 21183 21183 3.5871 1.3343 1 4740300 31737 2696 20927 21337 37551 37551 0.08523178398945674 LFFWFFLF 8 Unmodified _LFFWFFLF_ 0 0 0 REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5418090820312 3 389.540635 1165.60008 1.4177 0.00055224 2.21 0.00086087 3.6276 0.0014131 389.54131985534457 94.66 0.13609 88.484 88.409 88.545 -6.1757 11 7 2 0 0 0 0.79783 1 62727 62727 7.9102 3.7207 1 8155900 + 31738 27504 20928 21338 37552 37552 0.023899147016436473 LFFYPLDFTF 10 Unmodified _LFFYPLDFTF_ 0 0 0 ENSG00000167815|ENST00000301522|PRDX2;ENST00000450181.1_1_13:30870304-30870610:+|nuORF;nc|ENSG00000167815|P32119-2|PRDX2;ENST00000466174.5_1_19:12911560-12912565:-|nuORF;ENST00000477555.1_1_19:12910938-12912565:-|nuORF;nc|ENSG00000165672|P30048-2|PRDX3;ENSG00000165672|ENST00000298510|PRDX3 ENSG00000167815|ENST00000301522|PRDX2 ENSG00000167815|ENST00000301522|PRDX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3289184570312 2 655.328808 1308.64306 1.0666 0.000699 -1.3553 -0.00088818 -0.28869 -0.00018919 655.8291726316942 102.62 0.057106 96.449 96.418 96.475 -6.1757 26 11 3 0 0 0 0.081241 1 68861 68861 50.855 30.401 1 5547200 31739 7673 20929 21339 37553 37553 0.0010863996837997547 LFGCTWTPR 9 Unmodified _LFGCTWTPR_ 0 0 0 REV__ENST00000534481.1_1_11:46722838-46724291:+|nuORF REV__ENST00000534481.1_1_11:46722838-46724291:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7686767578125 2 540.768394 1079.52224 NaN NaN NaN NaN NaN NaN NaN 86.96 1 86.96 86.46 87.46 0 0 0 0 0.82396 1 48160 48160 4.756 0 1 + 31740 28501 20930 21340 37554 37554 -0.014344662260555197 LFGDILKQPSG 11 Unmodified _LFGDILKQPSG_ 0 0 0 REV__ENST00000465086.1_1_2:100019089-100019579:-|nuORF REV__ENST00000465086.1_1_2:100019089-100019579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.3284912109375 2 587.826963 1173.63937 0.13713 8.0608E-05 -0.30251 -0.00017782 -0.16538 -9.7216E-05 587.8267696923022 61.465 0.20464 61.465 61.343 61.548 0 13 9 2 0 0 0 0.65706 1 34257 34257 6.6304 0 1 767760 + 31741 20118 20931 21341 37555 37555 0.059499701945924244 LFGEPFTDQL 10 Unmodified _LFGEPFTDQL_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7620239257812 2 583.790047 1165.56554 0.38158 0.00022276 -0.9659 -0.00056388 -0.58432 -0.00034112 583.7894912917865 68.41 0.41331 67.93 67.683 68.096 -0.48071 30 18 3 0 0 0 0.21783 1 37404 37404 24.021 3.5669 1 1764700 + 31742 19010 20932 21342 37556 37556 -0.010619979677585434 LFGKGNSPLL 10 Unmodified _LFGKGNSPLL_ 0 0 0 nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;ENST00000465667.6_1_22:30218318-30228314:-|nuORF nc|ENSG00000100325|Q9H1I8-3|ASCC2 nc|ENSG00000100325|Q9H1I8-3|ASCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.303955078125 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 74.874 1 74.92 74.42 75.42 0.045959 0 0 0 0.91523 1 41277 41277 7.2892 0.93513 1 31743 1795 20933 21343 37557 37557 0.0762661985700106 LFGLLFHAMI 10 Unmodified _LFGLLFHAMI_ 0 0 0 REV__nc|ENSG00000269565|Q8NGA4|GPR32P1 REV__nc|ENSG00000269565|Q8NGA4|GPR32P1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.85888671875 2 581.328088 1160.64162 4.4318 0.0025763 -1.4189 -0.00082483 3.0129 0.0017515 581.3277810663113 99.327 0.086617 99.299 99.246 99.332 -0.028282 4 2 2 0 0 0 0.22993 1 55164 55164 12.532 4.6214 1 665250 + 31744 29998 20934 21344 37558 37558 0.0677272739867476 LFGPPTGD 8 Unmodified _LFGPPTGD_ 0 0 0 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 REV__nc|ENSG00000108528|Q02978-2|SLC25A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.394287109375 1 803.393396 802.386119 -0.025425 -2.0426E-05 0.051461 4.1344E-05 0.026036 2.0918E-05 803.3940951502866 62.907 0.41782 62.907 62.655 63.073 0 36 17 3 0 0 0 0.50586 1 35144 35144 34.187 2.0704 1 2804600 + 31745 18613 20935 21345 37559 37559 -0.02297837465050634 LFGQAYKKKL 10 Unmodified _LFGQAYKKKL_ 0 0 0 REV__ENST00000467894.5_1_1:33797241-33799821:-|nuORF REV__ENST00000467894.5_1_1:33797241-33799821:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2451782226562 3 399.24477 1194.71248 0.50098 0.00020002 1.0938 0.00043671 1.5948 0.00063672 399.2452898417658 52.699 0.18178 52.635 52.522 52.704 -0.063423 17 8 3 0 0 0 0.63399 1 28578 28578 8.4443 3.3968 1 2308500 + 31746 20001 20936 21346 37560 37560 0.12291143707830088 LFGRPFIHKE 10 Unmodified _LFGRPFIHKE_ 0 0 0 REV__ENST00000303562.8_1_14:75748168-75748225:+|nuORF REV__ENST00000303562.8_1_14:75748168-75748225:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3510131835938 2 622.35094 1242.68733 1.027 0.00063915 -0.54719 -0.00034054 0.47981 0.00029861 622.3507367839834 46.314 0.41822 46.281 45.992 46.41 -0.033417 33 19 2 0 0 0 0.5933 1 24942 24942 11.495 1.9507 1 2402600 + 31747 25352 20937 21347 37561 37561 0.07569088905279386 LFGSLISLFI 10 Unmodified _LFGSLISLFI_ 0 0 0 REV__ENSG00000166471|ENST00000528080|TMEM41B REV__ENSG00000166471|ENST00000528080|TMEM41B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.279296875 2 555.333893 1108.65323 1.3431 0.00074584 0.6698 0.00037196 2.0129 0.0011178 555.3342826093941 100.18 0.11989 94.005 93.938 94.058 -6.1757 10 6 2 0 0 0 0.21952 1 66965 66965 15.847 0 1 19941000 + 31748 22125 20938 21348 37562 37562 0.10325247693663187 LFGTNLLTLL 10 Unmodified _LFGTNLLTLL_ 0 0 0 REV__ENST00000580601.5_1_17:73687923-73687989:+|nuORF REV__ENST00000580601.5_1_17:73687923-73687989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8361206054688 2 552.8368 1103.65905 0.46889 0.00025922 0.0089395 4.9421E-06 0.47783 0.00026416 552.8366981529035 65.105 0.30002 64.621 64.47 64.77 -0.48428 34 13 3 0 0 0 0.0575 1 35596 35596 56.177 0 1 5538400 + 31749 29059 20939 21349 37563 37563 0.1113634620535322 LFGVAEVL 8 Unmodified _LFGVAEVL_ 0 0 0 REV__nc|ENSG00000133317|Q96DT0-2|LGALS12 REV__nc|ENSG00000133317|Q96DT0-2|LGALS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 847.4945678710938 1 847.492381 846.485105 0.0029155 2.4708E-06 1.6329 0.0013838 1.6358 0.0013863 847.4939727591342 83.301 0.31326 82.803 82.672 82.985 -0.49751 20 12 2 0 0 0 0.76859 1 45678 45678 11.114 0 1 720260 + 31750 19920 20940 21350 37564 37564 0.055721854998637355 LFHFINMWL 9 Unmodified _LFHFINMWL_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2302856445312 3 407.547684 1219.62122 1.335 0.00054408 -1.667 -0.00067937 -0.33196 -0.00013529 407.5469969260259 21.608 0.10798 18.873 18.827 18.935 -2.7348 7 5 2 0 0 0 0.58466 1 11605 11605 1.1933 0 1 781190 31751 4210 20941 21351 37565 37565 0.020195567388782365 LFHGTWWVC 9 Unmodified _LFHGTWWVC_ 0 0 0 ENST00000427625.1_1_10:72245529-72245760:-|nuORF ENST00000427625.1_1_10:72245529-72245760:-|nuORF ENST00000427625.1_1_10:72245529-72245760:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.77197265625 2 574.770937 1147.52732 NaN NaN NaN NaN NaN NaN NaN 58.748 1 52.674 52.174 53.174 -6.0745 0 0 0 0.3092 1 37663 37663 24.674 3.1369 1 31752 13196 20942 21352 37566 37566 -0.0405416236342262 LFHGYSSV 8 Unmodified _LFHGYSSV_ 0 0 0 REV__ENST00000538654.5_1_11:62622826-62622964:-|nuORF REV__ENST00000538654.5_1_11:62622826-62622964:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.8940734863281 2 455.226885 908.439217 NaN NaN NaN NaN NaN NaN NaN 16.621 1 16.622 16.122 17.122 0.0010548 0 0 0 0.97444 1 8206 8206 0.79363 0 1 + 31753 28559 20943 21353 37567 37567 -0.01866459682378263 LFHIFFMQTL 10 Unmodified _LFHIFFMQTL_ 0 0 0 REV__ENSG00000187747|ENST00000345043|OR52B6 REV__ENSG00000187747|ENST00000345043|OR52B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9004516601562 3 432.898493 1295.67365 0.80211 0.00034723 1.3988 0.00060554 2.2009 0.00095277 432.8994292645768 28.465 0.28468 25.317 25.212 25.497 -3.1482 21 14 2 0 0 0 0.65282 1 15937 15937 4.7159 0 1 6945000 + 31754 23657 20944 21354 37568 37568 0.037640950818286 LFHIRHTV 8 Unmodified _LFHIRHTV_ 0 0 0 ENST00000493615.5_1_3:110837734-110840977:+|nuORF ENST00000493615.5_1_3:110837734-110840977:+|nuORF ENST00000493615.5_1_3:110837734-110840977:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.7961730957031 2 511.798343 1021.58213 NaN NaN NaN NaN NaN NaN NaN 16.115 1 13.558 13.058 14.058 -2.557 0 0 0 0.97444 1 8326 8326 4.756 0 1 31755 14318 20945 21355 37569 37569 0.07220592499504619 LFHIRQHKD 9 Unmodified _LFHIRQHKD_ 0 0 0 REV__ZNF789|p.Q218K|1|0.04|ENSG00000198556|chr7:99486862-99486862|C/A|missense_variant REV__ZNF789|p.Q218K|1|0.04|ENSG00000198556|chr7:99486862-99486862|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 398.5576477050781 3 398.556118 1192.64652 NaN NaN NaN NaN NaN NaN NaN 17.503 1 14.917 14.417 15.417 -2.5866 0 0 0 0.73776 1 9158 9158 8.1555 1.9637 1 + 31756 30144 20946 21356 37570 37570 0.05790747585638201 LFHKERFHERL 11 Unmodified _LFHKERFHERL_ 0 0 0 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.6129455566406 3 504.612515 1510.81572 1.2136 0.00061241 -1.0643 -0.00053704 0.14936 7.5368E-05 504.61231720381795 35.771 0.46902 31.578 31.351 31.82 -4.1928 122 29 6 0 0 0 0.69509 1 20727 20727 4.7159 2.0847 1 150880000 + 31757 22265 20947 21357 37571 37571 0.08074024148368153 LFHKERFHERL 11 Unmodified _LFHKERFHERL_ 0 0 0 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 504.612515 1510.81572 1.2136 0.00061241 -1.0643 -0.00053704 0.14936 7.5368E-05 504.61231720381795 35.771 0.46902 31.578 31.351 31.82 -4.1928 -0.13955 -0.00022047 NaN 4.7159 122 29 6 NaN NaN NaN NaN 0 NaN NaN 0 150880000 + 31758 22265 20947 21357 0.08074024148368153 LFHLCQIF 8 Unmodified _LFHLCQIF_ 0 0 0 ENST00000485823.1_1_12:53279751-53279922:+|nuORF ENST00000485823.1_1_12:53279751-53279922:+|nuORF ENST00000485823.1_1_12:53279751-53279922:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2720642089844 2 510.770406 1019.52626 -0.20252 -0.00010344 2.3923 0.0012219 2.1898 0.0011185 510.77173437129187 44.928 0.20762 44.928 44.808 45.016 0 14 10 2 0 0 0 0.57408 1 24481 24481 28.173 0.54443 1 9469700 31759 14172 20948 21358 37572 37572 0.0172762326768634 LFHLLVQKS 9 Unmodified _LFHLLVQKS_ 0 0 0 ENSG00000163701|ENST00000383814|IL17RE;nc|ENSG00000163701|Q8NFR9-5|IL17RE;ENST00000489181.5_1_3:9944520-9950978:+|nuORF;ENST00000383815.7_1_3:9944714-9956386:+|nuORF;nc|ENSG00000163701|Q8NFR9-3|IL17RE ENSG00000163701|ENST00000383814|IL17RE ENSG00000163701|ENST00000383814|IL17RE MSMS AL20221201_MKP_PDAC_01 4 362.2227478027344 3 362.221965 1083.64407 NaN NaN NaN NaN NaN NaN NaN 104.97 1 98.79 98.29 99.29 -6.1757 0 0 0 0.85261 1 70271 70271 1.1933 0 1 31760 7053 20949 21359 37573 37573 0.10558899127977384 LFHMLFEL 8 Unmodified _LFHMLFEL_ 0 0 0 ENSG00000067992|ENST00000379162|PDK3;nc|ENSG00000067992|Q15120-2|PDK3 ENSG00000067992|ENST00000379162|PDK3 ENSG00000067992|ENST00000379162|PDK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.277099609375 2 525.278063 1048.54157 -0.89715 -0.00047125 0.18544 9.7405E-05 -0.71171 -0.00037385 525.2782865609415 56.195 0.25011 55.71 55.593 55.843 -0.48554 23 12 2 0 0 0 0.57408 1 30481 30481 28.173 1.2896 1 9173400 31761 968 20950 21360 37574 37574 0.019244900648800467 LFHPSNVEM 9 Oxidation (M) _LFHPSNVEM(Oxidation (M))_ LFHPSNVEM(1) LFHPSNVEM(65) 0 0 1 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2545776367188 2 545.255317 1088.49608 -0.55156 -0.00030074 -0.82885 -0.00045193 -1.3804 -0.00075267 545.2549397383083 30.111 0.43374 30.111 29.909 30.343 0 77 20 5 0 0 0 0.018301 1 15575 15575 65.235 19.214 1 406920000 31762 6140 20951 21361 37575 37575 1095 -0.044627801881688356 LFHPSNVEM 9 Oxidation (M) _LFHPSNVEM(Oxidation (M))_ LFHPSNVEM(1) LFHPSNVEM(75) 0 0 1 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2567138671875 2 545.255317 1088.49608 0.4643 0.00025316 -0.68996 -0.00037621 -0.22567 -0.00012305 545.2550122553207 30.123 0.62631 30.043 29.815 30.441 -0.080431 86 23 6 0 0 0 0.011968 2 15553 15553;15654 74.929 20.155 1 538130000 31763 6140 20951 21361 37576;37577 37576 1095 -0.044627801881688356 LFHPSNVEM 9 Oxidation (M) _LFHPSNVEM(Oxidation (M))_ LFHPSNVEM(1) LFHPSNVEM(96) 0 0 1 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2560424804688 2 545.255317 1088.49608 -0.018088 -9.8627E-06 0.40009 0.00021815 0.38201 0.00020829 545.255687789701 29.906 0.35295 29.936 29.784 30.137 0.030104 44 13 5 0 0 0 0.0082485 1 15591 15591 96.285 41.511 1 39725000 31764 6140 20951 21361 37578 37578 1095 -0.044627801881688356 LFHPSNVEM 9 Oxidation (M) _LFHPSNVEM(Oxidation (M))_ LFHPSNVEM(1) LFHPSNVEM(65) 0 0 1 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2560424804688 2 545.255317 1088.49608 0.7331 0.00039973 -0.77031 -0.00042002 -0.03721 -2.0289E-05 545.2551698748088 34.611 0.41689 30.516 30.301 30.718 -4.0951 72 24 4 0 0 0 0.018301 2 19889 19889;20019 65.235 19.214 1 61946000 31765 6140 20951 21361 37579;37580 37579 1095 -0.044627801881688356 LFHPSNVEM 9 Unmodified _LFHPSNVEM_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2582397460938 2 537.257859 1072.50117 0.35732 0.00019197 -0.65413 -0.00035144 -0.29682 -0.00015947 537.2575515353586 43.541 0.17636 43.525 43.461 43.637 -0.015667 11 7 2 0 0 0 0.05447 1 23343 23343 43.858 5.8843 1 10304000 31766 6140 20951 21362 37581 37581 -0.03218476325537267 LFHPSNVEM 9 Unmodified _LFHPSNVEM_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2584838867188 2 537.257859 1072.50117 1.1138 0.00059838 -0.33061 -0.00017762 0.78316 0.00042076 537.2577612278087 49.55 0.39008 44.129 43.963 44.354 -5.4213 62 24 3 0 0 0 0.05447 1 31035 31035 43.858 5.8843 1 128320000 31767 6140 20951 21362 37582 37582 -0.03218476325537267 LFHSCEENY 9 Unmodified _LFHSCEENY_ 0 0 0 nc|ENSG00000148482|Q504Y0-5|SLC39A12;SLC39A12|p.S609Tfs*3|1|0.05|ENSG00000148482|chr10:18003237-18003237|G/-|frameshift_variant;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12 nc|ENSG00000148482|Q504Y0-5|SLC39A12 nc|ENSG00000148482|Q504Y0-5|SLC39A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2353515625 2 571.234581 1140.45461 0.32524 0.00018579 1.271 0.00072603 1.5962 0.00091182 571.2350390339507 62.78 0.2646 62.78 62.655 62.92 0 19 10 2 0 0 0 0.53666 1 35013 35013 5.2307 0.47466 1 2341500 31768 5937 20952 21363 37583 37583 -0.10999960947515319 LFHSPQLPQAE 11 Unmodified _LFHSPQLPQAE_ 0 0 0 REV__ENSG00000170965|ENST00000359237|PLAC1 REV__ENSG00000170965|ENST00000359237|PLAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8274536132812 2 633.827495 1265.64044 0.29815 0.00018897 -1.2105 -0.00076723 -0.91233 -0.00057826 633.8273699128636 73.85 0.29115 73.894 73.672 73.963 0.043983 33 13 5 0 0 0 0.66568 1 40699 40699 9.3831 2.2814 1 5355900 + 31769 22527 20953 21364 37584 37584 0.018241845634747733 LFHTGARG 8 Unmodified _LFHTGARG_ 0 0 0 REV__ENST00000265626.8_3_20:56286395-56286494:-|nuORF REV__ENST00000265626.8_3_20:56286395-56286494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7335510253906 2 429.732669 857.450785 0.79439 0.00034137 1.2959 0.00055689 2.0903 0.00089826 429.73316583143355 58.284 0.35625 58.223 58.038 58.394 -0.060719 42 17 3 0 0 0 0.80975 1 31797 31797 0.79363 0 1 15209000 + 31770 25093 20954 21365 37585 37585 0.016357821316205445 LFHTLLAIY 9 Unmodified _LFHTLLAIY_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2891235351562 2 545.81841 1089.62227 1.2802 0.00069878 -1.2454 -0.00067975 0.034862 1.9028E-05 546.3192122847358 95.805 0.12971 89.63 89.584 89.714 -6.1757 11 7 2 0 0 0 0.18118 1 63511 63511 12.532 0 1 6923400 31771 4767 20955 21366 37586 37586 0.08104094379427806 LFHVGSKKM 9 Unmodified _LFHVGSKKM_ 0 0 0 REV__ENST00000465045.5_1_13:50100525-50100582:+|nuORF REV__ENST00000465045.5_1_13:50100525-50100582:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7955322265625 2 523.794412 1045.57427 NaN NaN NaN NaN NaN NaN NaN 51.321 1 51.268 50.768 51.768 -0.053871 0 0 0 0.76439 1 27772 27772 7.2892 0.93513 1 + 31772 27385 20956 21367 37587 37587 0.05330697187741862 LFHVLHSAWLV 11 Unmodified _LFHVLHSAWLV_ 0 0 0 REV__nc|ENSG00000174227|Q5H8A4-3|PIGG REV__nc|ENSG00000174227|Q5H8A4-3|PIGG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.58740234375 3 441.252036 1320.73428 0.41794 0.00018442 2.1194 0.0009352 2.5374 0.0011196 441.2531319161616 21.58 0.16964 21.594 21.523 21.692 0.013796 37 20 2 0 0 0 0.73237 1 11087 11087 1.2148 0.14337 1 2469100 + 31773 22775 20957 21368 37588 37588 0.08673948456407743 LFHVSSMSVF 10 Unmodified _LFHVSSMSVF_ 0 0 0 ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.1944885253906 3 385.195198 1152.56377 -0.31856 -0.00012271 0.20176 7.7719E-05 -0.1168 -4.4989E-05 385.1949358457421 35.059 0.38332 34.836 34.575 34.958 -0.2224 35 16 3 0 0 0 0.69064 1 18265 18265 1.9064 0 1 2162400 31774 7334 20958 21369 37589 37589 -0.006413302573719193 LFHVSSMSVF 10 Unmodified _LFHVSSMSVF_ 0 0 0 ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN ENSG00000165392|ENST00000298139|WRN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 385.195198 1152.56377 -0.59334 -0.00022855 -1.3835 -0.00053292 -1.9768 -0.00076147 385.19398104015676 34.793 0.16739 34.793 34.714 34.882 0 -0.021777 -0.0015306 NaN 1.9064 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1358500 31775 7334 20958 21369 -0.006413302573719193 LFIASALNGTV 11 Unmodified _LFIASALNGTV_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1 REV__ENSG00000007384|ENST00000262316|RHBDF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3179321289062 2 553.316232 1104.61791 0.70898 0.00039229 1.2561 0.00069503 1.9651 0.0010873 553.3167713296948 71.872 0.38002 71.395 71.192 71.572 -0.47609 40 14 4 0 0 0 0.16388 1 39291 39291 36.506 0 1 7475200 + 31776 17011 20959 21370 37590 37590 0.0697858516582528 LFIATSQKF 9 Unmodified _LFIATSQKF_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8004760742188 2 527.800217 1053.58588 -0.17673 -9.328E-05 -1.3828 -0.00072984 -1.5595 -0.00082312 527.7984028975266 53.997 0.62421 53.931 53.637 54.262 -0.066936 82 33 4 0 0 0 0.0086722 2 29294 29294;29394 88.954 49.004 1 90816000 31777 557 20960 21371 37591;37592 37591 0.06123217482695509 LFIATSQKF 9 Unmodified _LFIATSQKF_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.800537109375 2 527.800217 1053.58588 0.96989 0.00051191 -0.49963 -0.00026371 0.47026 0.0002482 527.8000933815055 59.902 0.60144 53.788 53.557 54.158 -6.1147 77 33 3 0 0 0 0.0085164 2 38590 38450;38590 99.799 46.223 1 241030000 31778 557 20960 21371 37593;37594 37594 0.06123217482695509 LFIDNIFRF 9 Unmodified _LFIDNIFRF_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8302612304688 2 592.826766 1183.63898 3.5747 0.0021192 -0.51025 -0.00030249 3.0644 0.0018167 592.8266741924923 99.453 0.18558 99.416 99.266 99.452 -0.036301 17 6 4 0 0 0 0.12357 1 55217 55217 39.95 23.801 1 4183100 31779 2756 20961 21372 37595 37595 0.05450595265369884 LFIEMHMAE 9 Unmodified _LFIEMHMAE_ 0 0 0 REV__ENST00000367593.1_1_6:143766094-143771801:-|nuORF REV__ENST00000367593.1_1_6:143766094-143771801:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7625122070312 2 560.76192 1119.50929 0.36629 0.0002054 0.49235 0.00027609 0.85864 0.00048149 560.7626058164102 86.964 0.27963 86.964 86.838 87.118 0 20 18 2 0 0 0 0.41742 1 48161 48161 11.64 0 1 579520 + 31780 25992 20962 21373 37596 37596 -0.045686654004384764 LFIEWPVL 8 Unmodified _LFIEWPVL_ 0 0 0 REV__nc|ENSG00000204544|Q5SSG8-3|MUC21 REV__nc|ENSG00000204544|Q5SSG8-3|MUC21 MSMS AL20221201_MKP_PDAC_01 4 508.7945861816406 2 508.794404 1015.57425 NaN NaN NaN NaN NaN NaN NaN 86.783 1 80.607 80.107 81.107 -6.1757 0 0 0 0.43098 1 57214 57214 49.669 9.7116 1 + 31781 24181 20963 21374 37597 37597 0.06709020459368276 LFIFCASS 8 Unmodified _LFIFCASS_ 0 0 0 REV__ENST00000328086.11_1_16:25268609-25269107:-|nuORF REV__ENST00000328086.11_1_16:25268609-25269107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2213439941406 2 444.220214 886.425876 -0.07222 -3.2082E-05 -1.3415 -0.00059592 -1.4137 -0.00062801 444.2211192602373 22.963 0.51147 22.963 22.876 23.387 0 41 26 2 0 0 0 0.80624 1 11887 11887 2.8892 0 1 762890 + 31782 25575 20964 21375 37598 37598 -0.02188033785978405 LFIFGRDVEG 10 Unmodified _LFIFGRDVEG_ 0 0 0 REV__ENST00000295087.12_1_2:152657041-152657143:-|nuORF REV__ENST00000295087.12_1_2:152657041-152657143:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8074951171875 2 576.806031 1151.59751 NaN NaN NaN NaN NaN NaN NaN 85.1 1 84.599 84.099 85.099 -0.5015 0 0 0 0.89532 1 46563 46563 8.1555 0 1 + 31783 25258 20965 21376 37599 37599 0.027774145060448063 LFIFHIKVF 9 Unmodified _LFIFHIKVF_ 0 0 0 ENST00000470773.1_1_2:172182447-172182657:-|nuORF ENST00000470773.1_1_2:172182447-172182657:-|nuORF ENST00000470773.1_1_2:172182447-172182657:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3544311523438 2 582.35242 1162.69029 1.6241 0.00094579 1.262 0.00073492 2.8861 0.0016807 582.3528918976002 100.87 0.28289 94.693 94.515 94.798 -6.1757 47 18 4 0 0 0 0.58466 1 67524 67524 2.3027 0 1 170820000 31784 13859 20966 21377 37600 37600 0.11544964030076699 LFIFLAPMTL 10 Unmodified _LFIFLAPMTL_ 0 0 0 REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3416748046875 2 583.338121 1164.66169 4.0122 0.0023405 -2.394 -0.0013965 1.6182 0.00094397 583.3389275806401 98.199 0.52182 98.181 97.733 98.255 -0.018188 29 18 3 0 0 0 0.33553 1 54555 54555 25.399 2.663 1 972670 + 31785 20273 20967 21378 37601 37601 0.08594478338636691 LFILKKNY 8 Unmodified _LFILKKNY_ 0 0 0 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2796630859375 2 519.820953 1037.62735 1.6179 0.00084101 -3.2083 -0.0016678 -1.5904 -0.00082675 519.8196989719434 98.2 0.19553 92.024 91.924 92.12 -6.1757 25 12 3 0 0 0 8.7369 1 65120 65120 6.3541 0 1 23372000 31786 5128 20968 21379 37602 37602 0.11004398242016578 LFINGYLII 9 Unmodified _LFINGYLII_ 0 0 0 REV__ENSG00000146383|ENST00000275198|TAAR6 REV__ENSG00000146383|ENST00000275198|TAAR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.32275390625 2 533.320786 1064.62702 4.3582 0.0023243 -0.99653 -0.00053147 3.3617 0.0017929 533.3201188468734 99.159 0.13791 99.131 99.051 99.189 -0.02829 11 4 3 0 0 0 0.095405 1 55091 55091 34.102 2.8341 1 2302800 + 31787 20829 20969 21380 37603 37603 0.09728978522184661 LFINGYLII 9 Unmodified _LFINGYLII_ 0 0 0 REV__ENSG00000146383|ENST00000275198|TAAR6 REV__ENSG00000146383|ENST00000275198|TAAR6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.320786 1064.62702 4.3582 0.0023243 -0.99653 -0.00053147 3.3617 0.0017929 533.3201188468734 99.159 0.13791 99.131 99.051 99.189 -0.02829 0 0 NaN 34.102 11 4 3 NaN NaN NaN NaN 0 NaN NaN 0 2302800 + 31788 20829 20969 21380 0.09728978522184661 LFIPSSKLLF 10 Unmodified _LFIPSSKLLF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.7938842773438 2 582.854993 1163.69543 0.4982 0.00029038 0.44877 0.00026157 0.94696 0.00055194 582.8552139379068 99.09 0.16678 92.914 92.807 92.974 -6.1757 15 9 2 0 0 0 0.22728 1 65871 65871 17.443 4.4002 1 54725000 31789 6500 20970 21381 37604 37604 0.12013223102030679 LFIPSSKLLFL 11 Unmodified _LFIPSSKLLFL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3967895507812 2 639.397025 1276.7795 0.33015 0.0002111 -0.40665 -0.00026001 -0.076501 -4.8914E-05 639.396804099083 100.65 0.10973 94.471 94.418 94.528 -6.1757 16 7 3 0 0 0 0.08701 1 67357 67357 43.982 11.196 1 55174000 31790 6500 20971 21382 37605 37605 0.15217754198943112 LFIQGKLLF 9 Unmodified _LFIQGKLLF_ 0 0 0 ENSG00000198960|ENST00000361910|ARMCX6 ENSG00000198960|ENST00000361910|ARMCX6 ENSG00000198960|ENST00000361910|ARMCX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8372802734375 2 539.836603 1077.65865 1.0565 0.00057034 0.060917 3.2885E-05 1.1174 0.00060323 539.8365247202896 98.436 0.13161 92.26 92.176 92.308 -6.1757 19 8 3 0 0 0 0.022193 1 65282 65282 61.357 17.499 1 37750000 31791 10213 20972 21383 37606 37606 0.12292971276133358 LFIQHSMIYF 10 Unmodified _LFIQHSMIYF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;ENST00000592618.5_1_19:1010351-1011343:-|nuORF ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 650.3719482421875 2 649.833734 1297.65292 1.5323 0.00099574 0.27582 0.00017924 1.8081 0.001175 649.83228069044 98.251 0.060532 92.076 92.042 92.102 -6.1757 6 3 2 0 0 0 0.22465 1 65170 65170 19.362 9.288 1 8316000 31792 9014 20973 21384 37607 37607 0.015995047021533537 LFISGCGHLL 10 Unmodified _LFISGCGHLL_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-7|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-7|TRPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1944274902344 3 353.860039 1058.55829 0.0031051 1.0988E-06 -0.62461 -0.00022102 -0.6215 -0.00021993 354.1943295851351 38.438 0.45828 38.455 38.265 38.724 0.017036 39 21 3 0 0 0 0.60623 1 20503 20503 9.544 0 1 3193500 + 31793 29638 20974 21385 37608 37608 0.0313499095084353 LFITYNIHL 9 Unmodified _LFITYNIHL_ 0 0 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENSG00000137207|ENST00000372422|YIPF3;ENST00000460547.6_1_6:43480300-43480648:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3215942382812 2 567.321317 1132.62808 NaN NaN NaN NaN NaN NaN NaN 49.948 1 49.948 49.448 50.448 0 0 0 0 0.56988 1 27514 27514 13.906 0 1 31794 4912;13641 20975 21386 37609 37609 0.06707192891099112 LFIWYWME 8 Unmodified _LFIWYWME_ 0 0 0 REV__ENSG00000205269|ENST00000379426|TMEM170B REV__ENSG00000205269|ENST00000379426|TMEM170B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.79443359375 2 594.283346 1186.55214 0.62007 0.0003685 2.4873 0.0014782 3.1074 0.0018467 594.2837377011873 99.258 0.15384 93.083 92.974 93.128 -6.1757 13 8 2 0 0 0 8.7369 1 66067 66067 11.114 0 1 50169000 + 31795 24219 20976 21387 37610 37610 -0.03367527280715876 LFKAIHNLL 9 Unmodified _LFKAIHNLL_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8905944824219 3 356.890327 1067.64915 1.4925 0.00053265 1.2088 0.00043139 2.7012 0.00096404 356.890315260665 93.701 0.19011 87.526 87.432 87.622 -6.1757 17 10 2 0 0 0 0.06187 1 62033 62033 45.7 18.816 1 4722600 31796 3677 20977 21388 37611 37611 0.11803202990586215 LFKEWNIT 8 Unmodified _LFKEWNIT_ 0 0 0 ENSG00000008405|ENST00000008527|CRY1 ENSG00000008405|ENST00000008527|CRY1 ENSG00000008405|ENST00000008527|CRY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8587646484375 3 350.858804 1049.55458 -0.25285 -8.8716E-05 -0.12109 -4.2484E-05 -0.37394 -0.0001312 350.8586761872831 35.422 0.24955 35.422 35.285 35.534 0 33 12 3 0 0 0 0.67481 1 18697 18697 14.838 0 1 22782000 31797 390 20978 21389 37612 37612 0.031786444485987886 LFKGTWIIM 9 Unmodified _LFKGTWIIM_ 0 0 0 ENST00000461023.5_1_16:337460-337892:-|nuORF ENST00000461023.5_1_16:337460-337892:-|nuORF ENST00000461023.5_1_16:337460-337892:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 370.2135925292969 3 370.212301 1107.61507 NaN NaN NaN NaN NaN NaN NaN 15.443 1 12.916 12.416 13.416 -2.5273 0 0 0 0.83049 1 7923 7923 2.2828 0 1 31798 13651 20979 21390 37613 37613 0.06557038507321522 LFKKKKKK 8 Unmodified _LFKKKKKK_ 0 0 0 ENST00000527958.5_1_11:117041336-117041564:+|nuORF ENST00000527958.5_1_11:117041336-117041564:+|nuORF ENST00000527958.5_1_11:117041336-117041564:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1048.079956054688 1 1047.7401 1046.73282 0.22454 0.00023526 -0.401 -0.00042014 -0.17646 -0.00018489 1048.7387945713351 26.254 0.091047 26.222 26.15 26.241 -0.031708 6 5 2 0 0 0 8.7369 1 13496 13496 0 0 1 6893400 31799 14845 20980 21391 37614 37614 0.21132359158309555 LFKLSLRDE 9 Unmodified _LFKLSLRDE_ 0 0 0 REV__ENSG00000189269|ENST00000317749|DRICH1 REV__ENSG00000189269|ENST00000317749|DRICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8216552734375 2 560.821681 1119.62881 0.70722 0.00039662 -0.062894 -3.5272E-05 0.64432 0.00036135 560.8216229578501 78.096 0.23909 78.149 78.037 78.276 0.052452 22 9 3 0 0 0 0.07087 1 43114 43114 39.95 5.548 1 4369300 + 31800 23773 20981 21392 37615 37615 0.07377987540144204 LFKLTEYH 8 Unmodified _LFKLTEYH_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.858642578125 3 350.858804 1049.55458 -0.44043 -0.00015453 0.15526 5.4476E-05 -0.28516 -0.00010005 350.85871339653386 35.552 0.39528 35.33 35.151 35.546 -0.2224 53 17 4 0 0 0 0.80143 1 18676 18676 3.9444 0 1 46437000 + 31801 18580 20982 21393 37616 37616 0.031786444485987886 LFKLTEYH 8 Unmodified _LFKLTEYH_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8596801757812 3 350.858804 1049.55458 0.98672 0.0003462 0.96572 0.00033883 1.9524 0.00068503 350.85895937044927 39.998 1.2501 35.469 35.216 36.466 -4.5294 217 89 4 0 0 0 0.80676 1 24093 24093 1.6526 0 1 580480000 + 31802 18580 20982 21393 37617 37617 0.031786444485987886 LFKNDPLFF 9 Unmodified _LFKNDPLFF_ 0 0 0 ENSG00000103642|ENST00000261893|LACTB;nc|ENSG00000103642|P83111-2|LACTB ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8087158203125 2 570.808042 1139.60153 1.0897 0.00062203 1.0139 0.00057876 2.1037 0.0012008 570.808090236261 80.202 0.26986 79.713 79.587 79.857 -0.48932 16 10 2 0 0 0 0.51218 1 43954 43954 6.7232 0 1 450230 31803 2156 20983 21394 37618 37618 0.03731503999733832 LFKNDPLFF 9 Unmodified _LFKNDPLFF_ 0 0 0 ENSG00000103642|ENST00000261893|LACTB;nc|ENSG00000103642|P83111-2|LACTB ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.809814453125 2 570.808042 1139.60153 0.21222 0.00012114 1.6161 0.0009225 1.8283 0.0010436 570.8089313740161 79.581 0.35295 79.636 79.468 79.821 0.054977 42 13 4 0 0 0 0.028475 1 44030 44030 56.177 20.05 1 9432600 31804 2156 20983 21394 37619 37619 0.03731503999733832 LFKNDPLFF 9 Unmodified _LFKNDPLFF_ 0 0 0 ENSG00000103642|ENST00000261893|LACTB;nc|ENSG00000103642|P83111-2|LACTB ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB MSMS AL20221201_MKP_PDAC_01 4 570.8089599609375 2 570.808042 1139.60153 NaN NaN NaN NaN NaN NaN NaN 98.206 1 92.03 91.53 92.53 -6.1757 0 0 0 0.02218 1 65115 65115 75.761 28.012 1 31805 2156 20983 21394 37620 37620 0.03731503999733832 LFKPFLAK 8 Unmodified _LFKPFLAK_ 0 0 0 ENST00000507925.1_1_4:25395483-25396777:+|nuORF ENST00000507925.1_1_4:25395483-25396777:+|nuORF ENST00000507925.1_1_4:25395483-25396777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.3047790527344 2 482.304939 962.595324 1.2467 0.00060127 -0.30905 -0.00014906 0.93761 0.00045222 482.30458207124684 70.853 0.32013 70.888 70.785 71.106 0.035515 29 14 3 0 0 0 0.74163 1 39021 39021 13.508 13.508 1 3751900 31806 14548 20984 21395 37621 37621 0.11253030558884802 LFKRLRAV 8 Unmodified _LFKRLRAV_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MSMS AL20221201_MKP_PDAC_01 4 501.8311157226562 2 501.832186 1001.64982 NaN NaN NaN NaN NaN NaN NaN 105.85 1 99.678 99.178 100.18 -6.1757 0 0 0 0.97444 1 70894 70894 0.69038 0 1 31807 5988 20985 21396 37622 37622 0.14906042430300204 LFKRRKRQ 8 Unmodified _LFKRRKRQ_ 0 0 0 REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF REV__ENST00000472730.1_1_3:61728131-61728755:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.3699951171875 2 566.364716 1130.71488 NaN NaN NaN NaN NaN NaN NaN 105.9 1 99.729 99.229 100.23 -6.1757 0 0 0 0.97444 1 70926 70926 0.69038 0.088878 1 + 31808 24054 20986 21397 37623 37623 0.15475036956172517 LFKYYQYI 8 Unmodified _LFKYYQYI_ 0 0 0 REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2 REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8695068359375 3 379.870821 1136.59063 NaN NaN NaN NaN NaN NaN NaN 35.603 1 35.38 34.88 35.88 -0.2224 0 0 0 0.97348 1 18650 18650 3.9444 0.94915 1 + 31809 18151 20987 21398 37624 37624 0.02780101625444331 LFLALELEP 9 Unmodified _LFLALELEP_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8030395507812 2 522.802426 1043.5903 0.24164 0.00012633 0.92714 0.00048471 1.1688 0.00061104 522.8028526148634 99.642 0.17585 99.484 99.407 99.583 -0.1575 16 5 4 0 0 0 0.045537 1 54402 54402 46.921 6.4723 1 10861000 + 31810 23413 20988 21399 37625 37625 0.07024681905613761 LFLALELEP 9 Unmodified _LFLALELEP_ 0 0 0 REV__ENSG00000184344|ENST00000329913|GDF3 REV__ENSG00000184344|ENST00000329913|GDF3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 522.802426 1043.5903 0.24164 0.00012633 0.92714 0.00048471 1.1688 0.00061104 522.8028526148634 99.642 0.17585 99.484 99.407 99.583 -0.1575 -0.030181 5.073E-05 NaN 46.921 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 10861000 + 31811 23413 20988 21399 0.07024681905613761 LFLATVLYIVK 11 Unmodified _LFLATVLYIVK_ 0 0 0 nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2729187011719 3 427.272325 1278.79515 NaN NaN NaN NaN NaN NaN NaN 97.828 1 97.828 97.328 98.328 0 0 0 0 0.9435 1 54045 54045 0 0 1 31812 2995 20989 21400 37626 37626 0.1669004071593463 LFLATVLYIVK 11 Unmodified _LFLATVLYIVK_ 0 0 0 nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2726745605469 3 427.272325 1278.79515 NaN NaN NaN NaN NaN NaN NaN 98.047 1 98.047 97.547 98.547 0 0 0 0 0.9435 1 54160 54160 0 0 1 31813 2995 20989 21400 37627 37627 0.1669004071593463 LFLCPDLTF 9 Unmodified _LFLCPDLTF_ 0 0 0 ENSG00000214216|ENST00000397832|IQCJ ENSG00000214216|ENST00000397832|IQCJ ENSG00000214216|ENST00000397832|IQCJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7775268554688 2 534.775354 1067.53615 0.87281 0.00046676 3.2557 0.0017411 4.1285 0.0022078 534.7768123021866 50.043 0.32506 44.504 44.282 44.607 -5.5391 33 20 2 0 0 0 0.14602 1 31274 31274 28.487 1.6032 1 16477000 31814 10486 20990 21401 37628 37628 0.005087664823804516 LFLDANLEE 9 Unmodified _LFLDANLEE_ 0 0 0 REV__ENST00000425843.1_1_X:120337800-120338163:-|nuORF REV__ENST00000425843.1_1_X:120337800-120338163:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7753295898438 2 532.268947 1062.52334 -0.45163 -0.00024039 2.4502 0.0013042 1.9985 0.0010638 532.2667248957093 27.791 0.45719 27.791 27.488 27.945 0 43 21 3 0 0 0 0.34999 1 14333 14333 14.838 0.93222 1 3521000 + 31815 26900 20991 21402 37629 37629 -0.005419733761527823 LFLDEWLRKFV 11 Unmodified _LFLDEWLRKFV_ 0 0 0 ENST00000570209.1_1_15:31127242-31129800:+|nuORF ENST00000570209.1_1_15:31127242-31129800:+|nuORF ENST00000570209.1_1_15:31127242-31129800:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.411376953125 2 733.413737 1464.81292 0.082445 6.0466E-05 -0.1726 -0.00012659 -0.090156 -6.6122E-05 733.4135408554218 87.601 0.22107 87.654 87.525 87.746 0.053352 15 9 2 0 0 0 0.30985 1 48704 48704 26.268 3.5319 1 14070000 31816 15474 20992 21403 37630 37630 0.0991075597080453 LFLDLSQRITL 11 Unmodified _LFLDLSQRITL_ 0 0 0 REV__ENSG00000155906|ENST00000444024|RMND1 REV__ENSG00000155906|ENST00000444024|RMND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.262451171875 3 440.262489 1317.76564 0.36648 0.00016135 -0.97547 -0.00042947 -0.60899 -0.00026812 440.26209367312373 19.68 0.14666 19.688 19.61 19.756 0.0078487 13 6 3 0 0 0 0.70705 1 10029 10029 3.5927 0.0056165 1 836380 + 31817 21299 20993 21404 37631 37631 0.11946476699836239 LFLDRTYVL 9 Unmodified _LFLDRTYVL_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.327880859375 2 570.326599 1138.63865 0.33248 0.00018962 1.6688 0.00095177 2.0013 0.0011414 570.327364323752 73.777 0.27039 73.821 73.654 73.924 0.043976 32 12 3 0 0 0 0.024189 1 40624 40624 59.368 14.961 1 16230000 31818 6576;5194 20994 21405 37632 37632 0.07487175545520586 LFLDRTYVL 9 Unmodified _LFLDRTYVL_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3272094726562 2 570.326599 1138.63865 0.41725 0.00023797 0.42901 0.00024468 0.84626 0.00048265 570.3267159969893 93.446 0.39514 87.27 87.056 87.451 -6.1757 48 27 2 0 0 0 0.024189 2 61892 61762;61892 59.368 30.882 1 22323000 31819 6576;5194 20994 21405 37633;37634 37634 0.07487175545520586 LFLDRTYVL 9 Unmodified _LFLDRTYVL_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;ENST00000463426.5_1_13:113864225-113883965:+|nuORF;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.326599 1138.63865 0.87319 0.000498 1.7022 0.0009708 2.5754 0.0014688 570.3271422247815 74.301 0.1725 73.825 73.714 73.887 -0.47588 0.0020996 2.4414E-05 NaN 59.368 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 418860 31820 6576;5194 20994 21405 0.07487175545520586 LFLDSNGLFLF 11 Unmodified _LFLDSNGLFLF_ 0 0 0 ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6 ENSG00000128973|ENST00000249806|CLN6 ENSG00000128973|ENST00000249806|CLN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3455200195312 2 643.344989 1284.67542 0.89291 0.00057445 1.009 0.00064911 1.9019 0.0012236 643.3449986309043 102.4 0.10369 96.225 96.158 96.262 -6.1757 20 8 4 0 0 0 0.019459 1 68712 68712 57.722 9.9733 1 13363000 31821 4105 20995 21406 37635 37635 0.044474273714058654 LFLEEDHY 8 Unmodified _LFLEEDHY_ 0 0 0 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2466430664062 2 533.248015 1064.48148 0.54533 0.0002908 -4.421 -0.0023575 -3.8757 -0.0020667 533.2467121407873 59.685 0.35061 59.685 59.423 59.773 0 30 15 3 0 0 0 0.5953 1 33249 33249 26.341 0 1 1879700 31822 7741 20996 21407 37636 37636 -0.0481852906466429 LFLEHAHNL 9 Unmodified _LFLEHAHNL_ 0 0 0 ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1977233886719 3 365.197819 1092.57163 0.20944 7.6488E-05 0.10029 3.6624E-05 0.30973 0.00011311 365.19784678169015 41.076 0.32422 40.773 40.64 40.964 -0.30304 38 15 4 0 0 0 0.028475 1 21726 21726 43.982 16.759 1 12222000 31823 6278 20997 21408 37637 37637 0.029045650544276214 LFLEHAHNL 9 Unmodified _LFLEHAHNL_ 0 0 0 ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1976318359375 3 365.197819 1092.57163 0.3219 0.00011756 -0.61239 -0.00022364 -0.29049 -0.00010609 365.1973503319218 40.774 0.206 40.772 40.665 40.871 -0.0017929 20 9 3 0 0 0 0.028475 1 21748 21748 43.982 16.759 1 3885500 31824 6278 20997 21408 37638 37638 0.029045650544276214 LFLEHAHNL 9 Unmodified _LFLEHAHNL_ 0 0 0 ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1982116699219 3 365.197819 1092.57163 1.3875 0.00050671 -0.46792 -0.00017088 0.91958 0.00033583 365.19751871379214 45.873 0.52062 40.918 40.641 41.162 -4.9549 79 34 4 0 0 0 0.044011 1 28206 28206 43.982 25.847 1 38349000 31825 6278 20997 21408 37639 37639 0.029045650544276214 LFLEHAHNL 9 Unmodified _LFLEHAHNL_ 0 0 0 ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.2604370117188 2 547.293091 1092.57163 0.68941 0.00037731 -0.89446 -0.00048953 -0.20505 -0.00011222 547.2922595919013 45.847 0.30452 40.892 40.713 41.018 -4.9549 38 19 3 0 0 0 0.12771 1 28195 28195 34.402 5.9149 1 11781000 31826 6278 20997 21408 37640 37640 0.029045650544276214 LFLEHAHNL 9 Unmodified _LFLEHAHNL_ 0 0 0 ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG ENSG00000153879|ENST00000284000|CEBPG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.293091 1092.57163 0.11043 6.0437E-05 0.35514 0.00019437 0.46557 0.0002548 547.2934987469739 41.053 0.20921 40.75 40.678 40.887 -0.30304 -0.070947 0.0011086 NaN 34.402 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1365800 31827 6278 20997 21408 0.029045650544276214 LFLEMLQRDF 10 Unmodified _LFLEMLQRDF_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MSMS AL20221201_MKP_PDAC_01 4 437.8970947265625 3 437.897041 1310.66929 NaN NaN NaN NaN NaN NaN NaN 90.292 1 84.117 83.617 84.617 -6.1757 0 0 0 0.8671 1 59630 59630 5.4027 0 1 31828 6618 20998 21409 37641 37641 0.026385858682260732 LFLFNDFLL 9 Unmodified _LFLFNDFLL_ 0 0 0 ENSG00000187510|ENST00000344636|PLEKHG7 ENSG00000187510|ENST00000344636|PLEKHG7 ENSG00000187510|ENST00000344636|PLEKHG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3173828125 2 571.318243 1140.62193 NaN NaN NaN NaN NaN NaN NaN 77.205 1 77.255 76.755 77.755 0.05011 0 0 0 0.22437 1 42608 42608 29.082 0.59474 1 31829 9555 20999 21410 37642 37642 0.05724674659563789 LFLFVDRTW 9 Unmodified _LFLFVDRTW_ 0 0 0 REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.826171875 2 598.826766 1195.63898 0.17554 0.00010512 0.050038 2.9964E-05 0.22557 0.00013508 598.826649441685 73.852 0.29321 73.896 73.781 74.074 0.043983 35 13 3 0 0 0 0.34999 1 40797 40797 14.838 4.0143 1 17083000 + 31830 26869 21000 21411 37643 37643 0.048985952653538334 LFLFVPLGF 9 Unmodified _LFLFVPLGF_ 0 0 0 REV__ENST00000487054.1_1_1:225605673-225607031:-|nuORF REV__ENST00000487054.1_1_1:225605673-225607031:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2901611328125 2 526.812596 1051.61064 -0.15901 -8.3769E-05 0.45616 0.00024031 0.29715 0.00015654 526.8127171871421 54.039 0.25661 53.972 53.824 54.081 -0.066936 17 12 2 0 0 0 0.18941 1 29271 29271 14.582 3.4672 1 1748900 + 31831 20673 21001 21412 37644 37644 0.08689897356089205 LFLHKQYIL 9 Unmodified _LFLHKQYIL_ 0 0 0 REV__ENST00000376747.7_1_13:96599298-96599325:-|nuORF REV__ENST00000376747.7_1_13:96599298-96599325:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2382202148438 3 392.237615 1173.69102 0.96189 0.00037729 1.5603 0.000612 2.5222 0.00098929 392.57242446378774 93.653 0.19119 87.478 87.364 87.555 -6.1757 25 10 3 0 0 0 0.15471 1 61995 61995 27.629 11.48 1 18769000 + 31832 26229 21002 21413 37645 37645 0.11111758679135164 LFLHRHAAL 9 Unmodified _LFLHRHAAL_ 0 0 0 REV__ENSG00000156206|ENST00000286732|CFAP161 REV__ENSG00000156206|ENST00000286732|CFAP161 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.765869140625 2 539.319443 1076.62433 0.54176 0.00029218 -1.306 -0.00070434 -0.76421 -0.00041216 539.3188258044779 73.095 0.24214 72.619 72.497 72.739 -0.47588 14 10 2 0 0 0 0.20727 1 39961 39961 7.9102 1.187 1 586270 + 31833 21319 21003 21414 37646 37646 0.0890856790788348 LFLHRHAAL 9 Unmodified _LFLHRHAAL_ 0 0 0 REV__ENSG00000156206|ENST00000286732|CFAP161 REV__ENSG00000156206|ENST00000286732|CFAP161 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.319443 1076.62433 0.048389 2.6097E-05 -5.0486 -0.0027228 -5.0002 -0.0026967 539.8190958786629 72.517 0.15158 72.558 72.465 72.617 0.041725 -0.030369 -0.0037356 NaN 7.9102 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 840760 + 31834 21319 21003 21414 0.0890856790788348 LFLHSRLFQEV 11 Unmodified _LFLHSRLFQEV_ 0 0 0 ENST00000534398.1_1_8:144821624-144824052:+|nuORF ENST00000534398.1_1_8:144821624-144824052:+|nuORF ENST00000534398.1_1_8:144821624-144824052:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.9288024902344 3 463.59435 1387.76122 0.33154 0.0001537 -0.34183 -0.00015847 -0.010292 -4.7715E-06 463.5941661707162 73.574 0.24213 73.618 73.471 73.713 0.043976 24 10 3 0 0 0 0.68649 1 40548 40548 5.5233 0.80737 1 2865000 31835 14953 21004 21415 37647 37647 0.0828501227695142 LFLHVGENR 9 Unmodified _LFLHVGENR_ 0 0 0 REV__ENST00000505846.5_1_4:83369114-83376003:+|nuORF REV__ENST00000505846.5_1_4:83369114-83376003:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2016296386719 3 362.201452 1083.58253 -0.26759 -9.6922E-05 1.3854 0.00050181 1.1179 0.00040489 362.20167873857866 33.03 0.22419 32.87 32.735 32.959 -0.15919 21 8 3 0 0 0 0.28023 1 17187 17187 12.873 0.34106 1 4631000 + 31836 28077 21005 21416 37648 37648 0.04407967428710435 LFLIKQRKKK 10 Unmodified _LFLIKQRKKK_ 0 0 0 ENSG00000147905|ENST00000336755|ZCCHC7;ENST00000481507.5_1_9:37326993-37357262:+|nuORF ENSG00000147905|ENST00000336755|ZCCHC7 ENSG00000147905|ENST00000336755|ZCCHC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.4448852539062 2 651.442632 1300.87071 NaN NaN NaN NaN NaN NaN NaN 84.267 1 84.331 83.831 84.831 0.063171 0 0 0 1.0019 1 46624 46624 0.45834 0.10771 1 31837 5890 21006 21417 37649 37649 0.23231062686886617 LFLIQLWLWAL 11 Unmodified _LFLIQLWLWAL_ 0 0 0 REV__ENSG00000007216|ENST00000314669|SLC13A2 REV__ENSG00000007216|ENST00000314669|SLC13A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.62109375 3 472.619836 1414.83768 0.67972 0.00032125 2.1101 0.00099729 2.7898 0.0013185 472.620684610058 57.442 0.1406 57.376 57.297 57.438 -0.066036 12 6 3 0 0 0 0.73237 1 31292 31292 1.2148 0.20126 1 1603700 + 31838 17006 21007 21418 37650 37650 0.14685435844239692 LFLKCFLPF 9 Unmodified _LFLKCFLPF_ 0 0 0 ENST00000489000.1_1_10:124615159-124615222:-|nuORF;ENST00000368898.7_1_10:124610050-124615222:-|nuORF;ENST00000368896.1_1_10:124608940-124615222:-|nuORF;ENST00000462859.5_1_10:124608765-124615222:-|nuORF ENST00000489000.1_1_10:124615159-124615222:-|nuORF ENST00000489000.1_1_10:124615159-124615222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5478820800781 3 376.548913 1126.62491 -0.55778 -0.00021003 -1.9787 -0.0007451 -2.5365 -0.00095513 376.54833877222336 18.462 0.0658 18.486 18.459 18.525 0.023106 16 13 2 0 0 0 0.60285 1 9257 9257 1.1933 0 1 282810 31839 12287 21008 21419 37651 37651 0.06666226512720641 LFLKKWRHHQL 11 Unmodified _LFLKKWRHHQL_ 0 0 0 ENST00000342992.10_3_2:179536946-179538410:-|nuORF;ENST00000414766.5_3_2:179506972-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF ENST00000342992.10_3_2:179536946-179538410:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 753.4491577148438 2 753.446237 1504.87792 NaN NaN NaN NaN NaN NaN NaN 96.586 1 90.411 89.911 90.911 -6.1757 0 0 0 0.9385 1 64009 64009 3.5965 0.31518 1 31840 11994 21009 21420 37652 37652 0.14567795287371155 LFLKRRDW 8 Unmodified _LFLKRRDW_ 0 0 0 nc|ENSG00000151418|Q96LB4-3|ATP6V1G3 nc|ENSG00000151418|Q96LB4-3|ATP6V1G3 nc|ENSG00000151418|Q96LB4-3|ATP6V1G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3316650390625 2 567.33255 1132.65055 0.30024 0.00017033 -0.8936 -0.00050697 -0.59337 -0.00033664 567.3318257327852 54.853 0.18058 54.387 54.302 54.482 -0.46664 13 8 2 0 0 0 0.79982 1 29775 29775 9.3474 1.4373 1 1857900 31841 16273 21010 21421 37653 37653 0.08952837079368692 LFLLGGQTF 9 Unmodified _LFLLGGQTF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 995.55712890625 1 995.556044 994.548768 2.3824 0.0023719 2.1157 0.0021063 4.4981 0.0044781 995.5549116803656 94.825 0.28416 94.839 94.668 94.952 0.014244 17 10 3 0 0 0 0.042911 1 52688 52688 48.346 12.302 1 4107900 31842 8124 21011 21422 37654 37654 0.05127545936943534 LFLLGGQTF 9 Unmodified _LFLLGGQTF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.5565185546875 1 995.556044 994.548768 1.0157 0.0010111 0.12504 0.00012448 1.1407 0.0011356 995.5560149117827 100.39 0.1501 94.214 94.141 94.291 -6.1757 16 9 2 0 0 0 0.0095811 1 67162 67162 81.613 24.142 1 27818000 31843 8124 21011 21422 37655 37655 0.05127545936943534 LFLLPGGLER 10 Unmodified _LFLLPGGLER_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A;ENST00000473013.1_1_17:18064529-18067169:+|nuORF;ENST00000433411.7_1_17:18062924-18082138:+|nuORF;nc|ENSG00000091536|Q9UKN7-2|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8344116210938 2 557.834591 1113.65463 0.37288 0.00020801 -1.306 -0.00072853 -0.93312 -0.00052053 557.8340747471515 80.202 1.0321 80.259 79.7 80.733 0.057587 73 46 2 0 0 0 0.02987 2 44272 44272;44488 68.081 8.0068 1 31498000 31844 1590 21012 21423 37656;37657 37656 0.10234881782434968 LFLLPGGLER 10 Unmodified _LFLLPGGLER_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A;ENST00000473013.1_1_17:18064529-18067169:+|nuORF;ENST00000433411.7_1_17:18062924-18082138:+|nuORF;nc|ENSG00000091536|Q9UKN7-2|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.834591 1113.65463 0.99476 0.00055491 -1.6895 -0.00094244 -0.69471 -0.00038754 557.8340190016185 81.147 0.25336 80.654 80.539 80.792 -0.49247 0.19754 -0.00020123 NaN 68.081 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2613700 31845 1590 21012 21423 0.10234881782434968 LFLLRKCSI 9 Unmodified _LFLLRKCSI_ 0 0 0 ENST00000259467.8_1_9:125589062-125590833:-|nuORF ENST00000259467.8_1_9:125589062-125590833:-|nuORF ENST00000259467.8_1_9:125589062-125590833:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2512817382812 2 546.833537 1091.65252 0.82418 0.00045069 -2.4832 -0.0013579 -1.659 -0.00090722 546.8321811673135 57.945 0.15441 57.879 57.755 57.91 -0.066036 13 7 3 0 0 0 0.19496 1 31503 31503 13.906 1.3745 1 2380500 31846 11216 21013 21424 37658 37658 0.11036129772946879 LFLLRSFILF 10 Unmodified _LFLLRSFILF_ 0 0 0 ENST00000282388.3_2_2:43451126-43451411:-|nuORF ENST00000282388.3_2_2:43451126-43451411:-|nuORF ENST00000282388.3_2_2:43451126-43451411:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.893310546875 2 634.891909 1267.76927 0.81947 0.00052027 1.6392 0.0010407 2.4587 0.001561 634.8926970569909 101.32 0.14597 95.141 95.046 95.192 -6.1757 21 8 3 0 0 0 0.68719 1 67937 67937 4.3292 0 1 41704000 31847 11421 21014 21425 37659 37659 0.14609191264366927 LFLLSDPAI 9 Unmodified _LFLLSDPAI_ 0 0 0 REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7895202636719 2 494.789318 987.564084 0.58985 0.00029185 -0.47459 -0.00023482 0.11526 5.7029E-05 494.7890485868719 89.921 0.36171 89.419 89.277 89.639 -0.50172 41 19 3 0 0 0 0.46577 1 49136 49136 9.3474 0 1 1335700 + 31848 24908 21015 21426 37660 37660 0.0698041273411718 LFLNYRNLHHF 11 Unmodified _LFLNYRNLHHF_ 0 0 0 nc|ENSG00000168904|Q86X40-2|LRRC28;ENSG00000168904|ENST00000301981|LRRC28;ENST00000560213.1_1_15:99796138-99796378:+|nuORF;ENST00000558500.5_1_15:99796138-99837514:+|nuORF nc|ENSG00000168904|Q86X40-2|LRRC28 nc|ENSG00000168904|Q86X40-2|LRRC28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.9300537109375 3 491.929844 1472.7677 0.96443 0.00047443 -0.66062 -0.00032498 0.30382 0.00014946 491.9294027323033 74.764 1.0428 68.588 68.02 69.063 -6.1757 78 55 2 0 0 0 0.68427 1 48819 48819 2.6312 0.19645 1 16619000 31849 7812 21016 21427 37661 37661 0.05022950228294576 LFLPLDFLL 9 Unmodified _LFLPLDFLL_ 0 0 0 ENST00000488747.5_1_1:65895684-65897486:+|nuORF;ENST00000484243.1_1_1:65895684-65895735:+|nuORF ENST00000488747.5_1_1:65895684-65897486:+|nuORF ENST00000488747.5_1_1:65895684-65897486:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.82958984375 2 545.830986 1089.64742 1.0822 0.00059068 -4.2886 -0.0023409 -3.2065 -0.0017502 545.8284788585048 96.933 0.18848 90.757 90.638 90.827 -6.1757 13 10 2 0 0 0 0.038285 1 64239 64239 50.855 4.8341 1 15642000 31850 14150 21017 21428 37662 37662 0.10618149181982517 LFLPPLLLLL 10 Unmodified _LFLPPLLLLL_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MSMS AL20221201_MKP_PDAC_01 4 576.3954467773438 2 576.393754 1150.77295 NaN NaN NaN NaN NaN NaN NaN 98.686 1 92.511 92.011 93.011 -6.1757 0 0 0 0.96627 1 65497 65497 4.3292 0 1 31851 10541 21018 21429 37663 37663 0.20359861038241434 LFLPPNRYIF 10 Unmodified _LFLPPNRYIF_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MSMS AL20221201_MKP_PDAC_01 4 640.3658447265625 2 640.363516 1278.71248 NaN NaN NaN NaN NaN NaN NaN 98.088 1 91.912 91.412 92.412 -6.1757 0 0 0 0.36315 1 65024 65024 39.957 15.283 1 31852 16078 21019 21430 37664 37664 0.08427143707831419 LFLPRTDYSF 10 Unmodified _LFLPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8309326171875 2 629.826963 1257.63937 1.0902 0.00068664 1.442 0.0009082 2.5322 0.0015948 629.8285167027441 71.278 0.40072 71.317 71.157 71.557 0.039032 66 17 6 0 0 0 0.021614 1 39216 39216 74.2 22.57 1 10654000 31853 10618 21020 21431 37665 37665 0.020859701945255438 LFLPRTDYSF 10 Unmodified _LFLPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8291015625 2 629.826963 1257.63937 0.95365 0.00060063 0.61906 0.0003899 1.5727 0.00099053 629.8270245837372 86.218 0.70001 80.042 79.566 80.266 -6.1757 69 38 3 0 0 0 0.012329 4 56815 56688;56807;56815;56944 83.429 39.656 1 10166000 31854 10618 21020 21431 37666;37667;37668;37669 37668 0.020859701945255438 LFLPSRKFI 9 Unmodified _LFLPSRKFI_ 0 0 0 REV__ENST00000260665.11_1_2:44209460-44209538:-|nuORF REV__ENST00000260665.11_1_2:44209460-44209538:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.2347412109375 3 374.234093 1119.68045 NaN NaN NaN NaN NaN NaN NaN 87.544 1 81.368 80.868 81.868 -6.1757 0 0 0 0.51965 1 57734 57734 15.248 3.7306 1 + 31855 24967 21021 21432 37670 37670 0.1253977602470968 LFLPWKCLVVV 11 Unmodified _LFLPWKCLVVV_ 0 0 0 ENST00000479431.1_1_11:131781360-132016587:+|nuORF;nc|ENSG00000182667|Q9P121-3|NTM;nc|ENSG00000182667|Q9P121|NTM;nc|ENSG00000183715|Q14982|OPCML;nc|ENSG00000183715|Q14982-4|OPCML;nc|ENSG00000182667|Q9P121-4|NTM ENST00000479431.1_1_11:131781360-132016587:+|nuORF ENST00000479431.1_1_11:131781360-132016587:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.8935546875 2 658.893595 1315.77264 NaN NaN NaN NaN NaN NaN NaN 15.63 1 15.636 15.136 16.136 0.0057774 0 0 0 0.9435 1 7798 7798 0 0 1 31856 14037 21022 21433 37671 37671 0.12738118046672753 LFLPYSHFL 9 Unmodified _LFLPYSHFL_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3126220703125 2 568.810585 1135.60662 0.017679 1.0056E-05 0.33387 0.00018991 0.35155 0.00019996 568.8108752362084 87.378 0.3313 87.436 87.282 87.613 0.05822 24 16 2 0 0 0 0.085319 1 48588 48588 48.346 8.3885 1 24238000 31857 3128 21023 21434 37672 37672 0.04423807862372087 LFLPYSHFL 9 Unmodified _LFLPYSHFL_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.810585 1135.60662 0.017679 1.0056E-05 0.33387 0.00018991 0.35155 0.00019996 568.8108752362084 87.378 0.3313 87.436 87.282 87.613 0.05822 0 0 NaN 48.346 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 24238000 31858 3128 21023 21434 0.04423807862372087 LFLQPAPH 8 Unmodified _LFLQPAPH_ 0 0 0 REV__ENST00000460288.1_1_3:186257375-186257486:-|nuORF REV__ENST00000460288.1_1_3:186257375-186257486:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 922.5162353515625 1 922.514514 921.507237 0.46388 0.00042794 -0.29584 -0.00027292 0.16804 0.00015502 922.514504993296 73.198 0.29404 73.24 73.108 73.402 0.041725 29 13 3 0 0 0 0.71616 2 40406 40293;40406 15.768 5.5848 1 4793100 + 31859 27295 21024 21435 37673;37674 37674 0.04334409968271302 LFLRDTKTL 9 Unmodified _LFLRDTKTL_ 0 0 0 ENSG00000228278|ENST00000431067|ORM2 ENSG00000228278|ENST00000431067|ORM2 ENSG00000228278|ENST00000431067|ORM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8331298828125 2 553.832049 1105.64954 0.46964 0.0002601 0.80081 0.00044351 1.2704 0.00070361 553.8324930111849 76.862 2.7535 70.686 68.416 71.17 -6.1757 250 150 3 0 0 0 0.032796 1 49797 49797 53.833 2.203 1 66182000 31860 10600 21025 21436 37675 37675 0.10094577919812764 LFLRSVEIE 9 Unmodified _LFLRSVEIE_ 0 0 0 REV__ENSG00000198670|ENST00000316300|LPA REV__ENSG00000198670|ENST00000316300|LPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.317626953125 2 553.316232 1104.61791 1.074 0.00059426 0.31316 0.00017328 1.3872 0.00076754 553.3161412687132 71.354 0.39441 71.393 71.184 71.579 0.039024 54 16 4 0 0 0 0.082934 1 39251 39251 39.95 0 1 8328100 + 31861 24035 21026 21437 37676 37676 0.06978585165848017 LFLSSAKLTL 10 Unmodified _LFLSSAKLTL_ 0 0 0 REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8923645019531 3 364.893625 1091.65905 0.074846 2.7311E-05 -3.2029 -0.0011687 -3.1281 -0.0011414 364.8927214933054 34.263 0.25231 34.29 34.163 34.416 0.027401 26 11 3 0 0 0 0.68844 1 18051 18051 4.1895 0.90819 1 4997700 + 31862 29166 21027 21438 37677 37677 0.11688346205323796 LFLTKPYLI 9 Unmodified _LFLTKPYLI_ 0 0 0 REV__nc|ENSG00000138814|Q08209-5|PPP3CA REV__nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3449096679688 2 554.344261 1106.67397 0.18644 0.00010335 1.1032 0.00061157 1.2897 0.00071492 554.3446566661504 88.133 0.40368 88.186 87.95 88.354 0.053352 28 16 2 0 0 0 0.026499 2 48949 48949;49064 62.573 6.0636 1 27773000 + 31863 20374 21028 21439 37678;37679 37678 0.12489838073315696 LFLVDVVME 9 Unmodified _LFLVDVVME_ 0 0 0 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 REV__nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7889404296875 2 532.788461 1063.56237 NaN NaN NaN NaN NaN NaN NaN 76.938 1 76.988 76.488 77.488 0.05011 0 0 0 0.33856 1 42458 42458 23.148 1.4018 1 + 31864 17466 21029 21440 37680 37680 0.03313035653877705 LFLVIYLLTL 10 Unmodified _LFLVIYLLTL_ 0 0 0 ENSG00000198678|ENST00000328207|OR5BS1P ENSG00000198678|ENST00000328207|OR5BS1P ENSG00000198678|ENST00000328207|OR5BS1P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3640747070312 2 604.388668 1206.76278 3.4136 0.0020631 -1.9801 -0.0011968 1.4335 0.00086638 604.3881425996176 98.024 0.14494 98.006 97.927 98.072 -0.018188 5 4 2 0 0 0 0.23981 1 54440 54440 0.45834 0 1 216250 31865 10121 21030 21441 37681 37681 0.1676725331299167 LFLVKERVWSE 11 Unmodified _LFLVKERVWSE_ 0 0 0 REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.3963623046875 2 703.395544 1404.77654 0.76268 0.00053646 0.6036 0.00042457 1.3663 0.00096103 703.395646434779 68.832 0.19402 68.857 68.77 68.964 0.025146 20 8 3 0 0 0 0.48615 1 37829 37829 17.113 0 1 2759600 + 31866 23912 21031 21442 37682 37682 0.09033879074127071 LFLVKERVWSE 11 Unmodified _LFLVKERVWSE_ 0 0 0 REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF REV__ENST00000424426.1_1_6:49518739-49519689:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.3955078125 2 703.395544 1404.77654 0.22129 0.00015566 -0.11812 -8.3085E-05 0.10317 7.2571E-05 703.3952858511092 72.759 0.19968 72.8 72.68 72.88 0.041725 20 9 3 0 0 0 0.48615 1 40074 40074 17.113 0 1 3374600 + 31867 23912 21031 21442 37683 37683 0.09033879074127071 LFLVNKLV 8 Unmodified _LFLVNKLV_ 0 0 0 ENSG00000166415|ENST00000360509|WDR72 ENSG00000166415|ENST00000360509|WDR72 ENSG00000166415|ENST00000360509|WDR72 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2805480957031 2 473.310221 944.605889 NaN NaN NaN NaN NaN NaN NaN 37.557 1 37.574 37.074 38.074 0.01704 0 0 0 0.97444 1 19943 19943 2.5775 0 1 31868 7484 21032 21443 37684 37684 0.1313701321332701 LFLVTLWI 8 Unmodified _LFLVTLWI_ 0 0 0 nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.6289978027344 2 502.812596 1003.61064 1.361 0.00068432 -0.54193 -0.00027249 0.81906 0.00041183 502.81242367688697 97.708 0.62935 91.533 91.279 91.908 -6.1757 109 39 4 0 0 0 0.71616 1 64715 64715 15.768 0 1 310590000 31869 4013 21033 21444 37685 37685 0.10897897356085195 LFLYSLFCI 9 Unmodified _LFLYSLFCI_ 0 0 0 REV__nc|ENSG00000089225|Q99593-2|TBX5 REV__nc|ENSG00000089225|Q99593-2|TBX5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.1759338378906 3 373.536673 1117.58819 0.43823 0.00016369 0.36947 0.00013801 0.8077 0.00030171 373.53692707804333 25.469 0.30549 22.585 22.387 22.693 -2.8831 24 16 2 0 0 0 0.21874 1 14010 14010 1.1933 0 1 4047300 + 31870 29524 21034 21445 37686 37686 0.03409929896156427 LFMALVHRTW 10 Unmodified _LFMALVHRTW_ 0 0 0 REV__ENST00000371513.9_1_1:53413698-53420453:+|nuORF REV__ENST00000371513.9_1_1:53413698-53420453:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3489990234375 2 637.347343 1272.68013 NaN NaN NaN NaN NaN NaN NaN 83.28 1 83.343 82.843 83.843 0.063171 0 0 0 0.91523 1 46072 46072 7.2892 1.5574 1 + 31871 26085 21035 21446 37687 37687 0.054700330331797886 LFMDDDSY 8 Unmodified _LFMDDDSY_ 0 0 0 ENSG00000105971|ENST00000222693|CAV2;nc|ENSG00000105971|P51636-3|CAV2 ENSG00000105971|ENST00000222693|CAV2;nc|ENSG00000105971|P51636-3|CAV2 ENSG00000105971|ENST00000222693|CAV2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.1966857910156 2 503.197133 1004.37971 NaN NaN NaN NaN NaN NaN NaN 53.3 1 52.848 52.348 53.348 -0.45173 0 0 0 0.9706 1 28835 28835 6.3541 0 1 31872 2383;16104 21036 21447 37688 37688 -0.12230143478745958 LFMFFFLI 8 Unmodified _LFMFFFLI_ 0 0 0 ENST00000295754.9_1_3:30735309-30735375:+|nuORF ENST00000295754.9_1_3:30735309-30735375:+|nuORF ENST00000295754.9_1_3:30735309-30735375:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2967529296875 2 539.295725 1076.5769 0.34239 0.00018465 -0.89346 -0.00048184 -0.55107 -0.00029719 539.2952858429793 86.752 0.40244 86.249 86.066 86.469 -0.50318 36 15 3 0 0 0 0.76859 1 47422 47422 11.114 4.7604 1 1767100 31873 11496 21037 21448 37689 37689 0.04167152592685852 LFMPRSTEF 9 Oxidation (M) _LFM(Oxidation (M))PRSTEF_ LFM(1)PRSTEF LFM(52)PRSTEF 0 0 1 ENSG00000253276|ENST00000523505|CCDC71L;nc|ENSG00000253276|Q8N9Z2-2|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L ENSG00000253276|ENST00000523505|CCDC71L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2813110351562 2 572.278792 1142.54303 0.84262 0.00048221 0.36344 0.00020799 1.2061 0.0006902 572.2791220879961 47.191 0.21689 46.838 46.722 46.938 -0.3526 18 10 2 0 0 0 0.036857 1 25288 25288 51.63 23.143 1 4399300 31874 10760 21038 21449 37690 37690 1720 -0.02253920637031115 LFMQHILI 8 Unmodified _LFMQHILI_ 0 0 0 REV__ENST00000382247.5_1_4:17806208-17806735:-|nuORF REV__ENST00000382247.5_1_4:17806208-17806735:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7359924316406 2 507.793881 1013.57321 1.1331 0.00057541 -2.7071 -0.0013747 -1.574 -0.00079926 508.2945288323398 53.941 0.36048 48.076 47.979 48.339 -5.8653 25 20 2 0 0 0 8.7369 1 34172 34172 19.439 2.3524 1 14758000 + 31875 26343 21039 21450 37691 37691 0.06696482818836103 LFMSDAWS 8 Unmodified _LFMSDAWS_ 0 0 0 REV__ENST00000376477.5_1_X:48818855-48818957:-|nuORF REV__ENST00000376477.5_1_X:48818855-48818957:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.2279663085938 1 956.41823 955.410954 0.80029 0.00076541 -0.29164 -0.00027893 0.50865 0.00048649 956.4179173724771 99.467 0.21528 93.292 93.201 93.416 -6.1757 31 13 3 0 0 0 0.28922 1 66184 66184 56.541 0 1 56218000 + 31876 26223 21040 21451 37692 37692 -0.06853525653980341 LFNDQSVIDVF 11 Unmodified _LFNDQSVIDVF_ 0 0 0 REV__ENSG00000131043|ENST00000320849|AAR2 REV__ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.827392578125 2 648.82716 1295.63977 0.41204 0.00026734 0.33908 0.00022 0.75111 0.00048734 648.8272724313815 84.45 0.61197 83.95 83.666 84.278 -0.49961 88 27 4 0 0 0 0.50268 1 46212 46212 26.268 12.362 1 13706000 + 31877 19765 21041 21452 37693 37693 0.0037734512375209306 LFNDQSVIDVF 11 Unmodified _LFNDQSVIDVF_ 0 0 0 REV__ENSG00000131043|ENST00000320849|AAR2 REV__ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8272094726562 2 648.82716 1295.63977 1.005 0.00065206 0.3263 0.00021171 1.3313 0.00086377 648.8269073074296 93.934 1.1268 87.758 87.318 88.445 -6.1757 214 65 4 0 0 0 0.4121 1 62600 62600 32.786 18.88 1 101800000 + 31878 19765 21041 21452 37694 37694 0.0037734512375209306 LFNDTRVSF 9 Unmodified _LFNDTRVSF_ 0 0 0 nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35 nc|ENSG00000118369|Q9P2H5-2|USP35 nc|ENSG00000118369|Q9P2H5-2|USP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2874755859375 2 549.782556 1097.55056 0.38575 0.00021208 1.4701 0.00080822 1.8558 0.0010203 550.2853279195797 54.932 0.21562 54.863 54.744 54.96 -0.068737 16 10 2 0 0 0 0.46501 1 29878 29878 9.3831 0 1 1291400 31879 3367 21042 21453 37695 37695 0.005685549549070856 LFNFCWTL 8 Unmodified _LFNFCWTL_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2546997070312 2 522.254588 1042.49462 0.62786 0.0003279 -0.53142 -0.00027754 0.096431 5.0362E-05 522.2543880038171 74.609 0.29074 74.609 74.472 74.763 0 22 12 2 0 0 0 0.57045 1 41498 41498 28.487 3.813 1 1563400 31880 1309 21043 21454 37696 37696 -0.024923694862764023 LFNGQKFLLF 10 Unmodified _LFNGQKFLLF_ 0 0 0 ENSG00000111981|ENST00000229708|ULBP1 ENSG00000111981|ENST00000229708|ULBP1 ENSG00000111981|ENST00000229708|ULBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3477172851562 2 613.850242 1225.68593 2.6569 0.0016309 -2.0767 -0.0012748 0.58017 0.00035614 613.8489704970531 99.985 0.13712 99.949 99.88 100.02 -0.036301 10 4 3 0 0 0 0.23227 1 55546 55546 10.824 3.5347 1 3047600 31881 2848 21044 21455 37697 37697 0.08211454816500918 LFNIPQIAY 9 Unmodified _LFNIPQIAY_ 0 0 0 nc|ENSG00000168959|P41594-3|GRM5;nc|ENSG00000168959|P41594-2|GRM5;ENSG00000168959|ENST00000305447|GRM5 nc|ENSG00000168959|P41594-3|GRM5 nc|ENSG00000168959|P41594-3|GRM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8015747070312 2 539.800217 1077.58588 -0.12405 -6.6963E-05 -1.6346 -0.00088237 -1.7587 -0.00094933 539.7997705741914 51.534 0.35287 51.48 51.342 51.695 -0.053871 25 11 3 0 0 0 0.41742 1 27935 27935 11.64 0 1 3612400 31882 7821 21045 21456 37698 37698 0.05019217482708882 LFNKGGSVFL 10 Unmodified _LFNKGGSVFL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3056030273438 2 541.305667 1080.59678 0.78585 0.00042538 0.5656 0.00030616 1.3514 0.00073155 541.3056347258079 66.772 0.57775 66.781 66.398 66.976 0.0095596 56 27 4 0 0 0 0.20962 1 36734 36734 32.786 5.1569 1 24405000 31883 7163 21046 21457 37699 37699 0.059706198569983826 LFNLLVSIC 9 Unmodified _LFNLLVSIC_ 0 0 0 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2894592285156 2 511.291171 1020.56779 NaN NaN NaN NaN NaN NaN NaN 80.241 1 80.299 79.799 80.799 0.057587 0 0 0 0.071041 1 44347 44347 50.855 0 1 31884 8540 21047 21458 37700 37700 0.058327592363411895 LFNPRLRGI 9 Unmodified _LFNPRLRGI_ 0 0 0 REV__nc|ENSG00000141934|O43688-3|PLPP2 REV__nc|ENSG00000141934|O43688-3|PLPP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2190551757812 3 362.557459 1084.65055 0.34463 0.00012495 -1.5962 -0.00057872 -1.2516 -0.00045377 362.5567143319031 48.113 0.19576 48.074 47.988 48.184 -0.038643 15 9 2 0 0 0 0.21242 1 25936 25936 2.9952 0 1 1731500 + 31885 20556 21048 21459 37701 37701 0.11160837079364683 LFNQLMKPL 9 Unmodified _LFNQLMKPL_ 0 0 0 REV__ENSG00000280236|ENST00000642051|OR12D2 REV__ENSG00000280236|ENST00000642051|OR12D2 MSMS AL20221201_MKP_PDAC_01 4 552.3189086914062 2 552.31772 1102.62089 NaN NaN NaN NaN NaN NaN NaN 73.016 1 66.841 66.341 67.341 -6.1757 0 0 0 0.050352 1 47756 47756 57.471 26.835 1 + 31886 24683 21049 21460 37702 37702 0.07368137019011556 LFNSITSFY 9 Unmodified _LFNSITSFY_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2743530273438 2 546.274032 1090.53351 0.25208 0.0001377 0.3563 0.00019464 0.60838 0.00033234 546.2741841998609 80.522 0.45993 80.522 80.38 80.84 0 35 22 2 0 0 0 0.2143 1 44707 44707 21.747 2.4897 1 1665700 31887 989 21050 21461 37703 37703 -0.008133656509016873 LFNSITSFY 9 Unmodified _LFNSITSFY_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.274032 1090.53351 0.65198 0.00035616 0.85146 0.00046513 1.5034 0.00082129 546.7760258333644 81.044 0.19612 80.551 80.422 80.619 -0.49247 0.014719 0.00043817 NaN 21.747 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1777100 31888 989 21050 21461 -0.008133656509016873 LFNVNSFCF 9 Carbamidomethyl (C) _LFNVNSFC(Carbamidomethyl (C))F_ LFNVNSFC(1)F LFNVNSFC(64)F 0 1 0 ENST00000540651.5_1_1:228285741-228285906:+|nuORF ENST00000540651.5_1_1:228285741-228285906:+|nuORF ENST00000540651.5_1_1:228285741-228285906:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2661743164062 2 574.265684 1146.51682 1.2594 0.0007232 -0.30862 -0.00017723 0.95073 0.00054597 574.265304256664 37.699 0.48692 33.33 33.11 33.597 -4.3689 53 29 2 0 0 0 0.019303 1 22196 22196 64.236 15.89 1 16591000 31889 15033 21051 21462 37704 37704 993 -0.05058189808528368 LFNVTYNTF 9 Unmodified _LFNVTYNTF_ 0 0 0 ENST00000295628.3_1_3:120045250-120045442:-|nuORF ENST00000295628.3_1_3:120045250-120045442:-|nuORF ENST00000295628.3_1_3:120045250-120045442:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7791748046875 2 559.779482 1117.54441 0.5602 0.00031359 -2.3674 -0.0013252 -1.8072 -0.0010116 559.7783081409034 40.215 0.16188 39.918 39.824 39.986 -0.29716 9 7 2 0 0 0 0.54444 1 21268 21268 4.756 0 1 1104900 31890 11492 21052 21463 37705 37705 -0.009659632766442883 LFPAERELV 9 Unmodified _LFPAERELV_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8038330078125 2 537.303124 1072.5917 0.71811 0.00038584 1.3444 0.00072235 2.0625 0.0011082 537.8049121613634 75.501 1.2538 69.326 68.679 69.932 -6.1757 137 67 3 0 0 0 0.36964 1 49411 49411 13.906 0.86358 1 28195000 + 31891 22034 21053 21464 37706 37706 0.058303159943761784 LFPAHGVFF 9 Unmodified _LFPAHGVFF_ 0 0 0 REV__ENSG00000171435|ENST00000339824|KSR2 REV__ENSG00000171435|ENST00000339824|KSR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7770385742188 2 517.776545 1033.53854 NaN NaN NaN NaN NaN NaN NaN 55.722 1 55.653 55.153 56.153 -0.068737 0 0 0 0.70111 1 30288 30288 9.3474 0.75416 1 + 31892 22559 21054 21465 37707 37707 0.023109830023713585 LFPAQGEPL 9 Unmodified _LFPAQGEPL_ 0 0 0 REV__ENSG00000137218|ENST00000373018|FRS3 REV__ENSG00000137218|ENST00000373018|FRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2640686035156 2 486.263468 970.512382 0.93813 0.00045618 2.6814 0.0013039 3.6195 0.00176 486.26549557977097 93.781 0.31988 87.606 87.412 87.732 -6.1757 21 18 2 0 0 0 0.32871 1 62107 62107 15.847 0 1 4959200 + 31893 20223 21055 21466 37708 37708 0.025946690402406603 LFPAWHYI 8 Unmodified _LFPAWHYI_ 0 0 0 nc|ENSG00000184716|A6NH21|SERINC4 nc|ENSG00000184716|A6NH21|SERINC4 nc|ENSG00000184716|A6NH21|SERINC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7757568359375 2 523.776545 1045.53854 NaN NaN NaN NaN NaN NaN NaN 73.532 1 73.532 73.032 74.032 0 0 0 0 0.97444 1 40939 40939 2.8892 0.31174 1 31894 16457 21056 21467 37709 37709 0.01758983002378045 LFPDTQLLEF 10 Unmodified _LFPDTQLLEF_ 0 0 0 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL;nc|ENSG00000178038|Q60I27-5|ALS2CL;nc|ENSG00000178038|Q60I27-4|ALS2CL;ENST00000498817.5_1_3:46713372-46716156:-|nuORF ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8224487304688 2 611.821347 1221.62814 1.5641 0.00095694 -1.8928 -0.0011581 -0.32876 -0.00020114 611.8201041276021 100.83 0.1037 94.656 94.584 94.688 -6.1757 11 6 2 0 0 0 0.046375 1 67533 67533 60.074 3.8969 1 31948000 31895 8725 21057 21468 37710 37710 0.02619148100438906 LFPEHGFWIS 10 Unmodified _LFPEHGFWIS_ 0 0 0 ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8098754882812 2 616.808574 1231.60259 0.41715 0.0002573 0.88604 0.00054651 1.3032 0.00080381 616.8094191885758 76.191 0.68002 76.239 75.909 76.589 0.047943 81 28 4 0 0 0 0.27276 1 42082 42082 29.082 0 1 127070000 31896 10756 21058 21469 37711 37711 -0.003942816313383446 LFPEVVNIR 9 Unmodified _LFPEVVNIR_ 0 0 0 REV__ENST00000269601.9_1_18:77733562-77733688:-|nuORF REV__ENST00000269601.9_1_18:77733562-77733688:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8194580078125 2 543.818941 1085.62333 0.42489 0.00023106 -0.96213 -0.00052322 -0.53724 -0.00029216 543.8183248760505 69.359 0.422 69.39 69.207 69.629 0.030914 42 23 2 0 0 0 0.038285 1 38100 38100 50.855 0 1 12165000 + 31897 25127 21059 21470 37712 37712 0.08394308748302137 LFPGKAFSW 9 Unmodified _LFPGKAFSW_ 0 0 0 nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7828979492188 2 526.781828 1051.5491 1.0899 0.00057412 0.79391 0.00041822 1.8838 0.00099233 526.7820570843385 87.433 1.0859 81.257 80.643 81.729 -6.1757 105 59 2 0 0 0 0.05447 4 57568 57439;57568;57696;57822 43.858 4.1769 1 24315000 31898 504 21060 21471 37713;37714;37715;37716 37714 0.02538965656799519 LFPGKAFSW 9 Unmodified _LFPGKAFSW_ 0 0 0 nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MSMS AL20221201_MKP_PDAC_01 4 526.7808837890625 2 526.781828 1051.5491 NaN NaN NaN NaN NaN NaN NaN 87.931 1 81.755 81.255 82.255 -6.1757 0 0 0 0.16996 1 57994 57994 34.402 4.1769 1 31899 504 21060 21471 37717 37717 0.02538965656799519 LFPHNCCF 8 Unmodified _LFPHNCCF_ 0 0 0 REV__ENSG00000206073|ENST00000341074|SERPINB4 REV__ENSG00000206073|ENST00000341074|SERPINB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7102355957031 2 490.709491 979.404429 NaN NaN NaN NaN NaN NaN NaN 80.386 1 80.444 79.944 80.944 0.057587 0 0 0 0.9706 1 44433 44433 6.3541 0.59368 1 + 31900 24249 21061 21472 37718 37718 -0.08609742086343886 LFPILLPLHF 10 Unmodified _LFPILLPLHF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|216|1|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|216|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.91748046875 3 403.917994 1208.73215 NaN NaN NaN NaN NaN NaN NaN 39.097 1 39.109 38.609 39.609 0.011452 0 0 0 0.99897 1 20816 20816 0.77653 0 1 + 31901 29427 21062 21473 37719 37719 0.13613519718592215 LFPLEAVRE 9 Unmodified _LFPLEAVRE_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3048095703125 2 537.303124 1072.5917 0.71811 0.00038584 1.3444 0.00072235 2.0625 0.0011082 537.8049121613634 75.501 1.2538 69.326 68.679 69.932 -6.1757 137 67 3 0 0 0 0.1773 1 49293 49293 25.399 0 1 28195000 31902 3859 21063 21474 37720 37720 0.058303159943761784 LFPMHNDEY 9 Unmodified _LFPMHNDEY_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MSMS AL20221201_MKP_PDAC_01 4 583.2503662109375 2 583.252774 1164.491 NaN NaN NaN NaN NaN NaN NaN 84.818 1 78.643 78.143 79.143 -6.1757 0 0 0 0.7453 1 55822 55822 7.9102 0 1 + 31903 21061 21064 21475 37721 37721 -0.08467084050789708 LFPPIFPFL 9 Unmodified _LFPPIFPFL_ 0 0 0 REV__ENST00000542104.5_2_12:65089764-65089941:+|nuORF REV__ENST00000542104.5_2_12:65089764-65089941:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8203735351562 2 545.820421 1089.62629 -0.59459 -0.00032454 1.1087 0.00060513 0.51407 0.00028059 545.8207463987779 102.9 0.073769 102.85 102.81 102.88 -0.04792 6 2 3 0 0 0 0.085487 1 57165 57165 36.466 0 1 2436000 + 31904 28609 21065 21476 37722 37722 0.08506183873123518 LFPPPHLL 8 Unmodified _LFPPPHLL_ 0 0 0 REV__ENST00000381031.7_1_22:46689351-46689492:+|nuORF REV__ENST00000381031.7_1_22:46689351-46689492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2830810546875 2 467.281463 932.548374 0.60403 0.00028225 -0.57237 -0.00026746 0.031659 1.4793E-05 467.281567481944 58.485 0.31065 58.424 58.215 58.526 -0.060719 36 15 3 0 0 0 0.70131 1 31902 31902 17.087 0 1 6320100 + 31905 26325 21066 21477 37723 37723 0.07940171007760455 LFPQGPHL 8 Unmodified _LFPQGPHL_ 0 0 0 ENSG00000186051|ENST00000334077|TAL2 ENSG00000186051|ENST00000334077|TAL2 ENSG00000186051|ENST00000334077|TAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7533874511719 2 454.75307 907.491587 0.80904 0.00036792 -0.070786 -3.219E-05 0.73826 0.00033573 454.7529611387225 80.834 0.43617 74.659 74.334 74.77 -6.1757 34 23 2 0 0 0 0.65867 1 53076 53076 20.871 0 1 12960000 31906 9445 21067 21478 37724 37724 0.03414123451238993 LFPQQEMIDMP 11 Unmodified _LFPQQEMIDMP_ 0 0 0 REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 REV__nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.213623046875 3 450.214041 1347.62029 0.025894 1.1658E-05 0.41492 0.0001868 0.44082 0.00019846 450.21436382994034 65.602 0.39923 65.117 64.938 65.337 -0.48428 58 17 5 0 0 0 0.72952 1 35767 35767 0.50596 0 1 8302500 + 31907 17664 21068 21479 37725 37725 -0.03961070483023832 LFPRMLVR 8 Unmodified _LFPRMLVR_ 0 0 0 REV__ENST00000357376.7_1_2:55255317-55276328:-|nuORF REV__ENST00000357376.7_1_2:55255317-55276328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3135375976562 2 516.312772 1030.61099 3.2721 0.0016895 -0.64618 -0.00033363 2.626 0.0013558 516.3125163648094 99.672 0.22017 99.636 99.503 99.723 -0.036301 13 7 2 0 0 0 0.80624 1 55381 55381 2.8892 0 1 3922200 + 31908 25850 21069 21480 37726 37726 0.09690993804292702 LFPWPLYPD 9 Unmodified _LFPWPLYPD_ 0 0 0 ENST00000267812.3_1_15:44097132-44097216:-|nuORF ENST00000267812.3_1_15:44097132-44097216:-|nuORF ENST00000267812.3_1_15:44097132-44097216:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.2011413574219 3 383.198937 1146.57498 NaN NaN NaN NaN NaN NaN NaN 20.1 1 17.444 16.944 17.944 -2.6564 0 0 0 0.7243 1 10690 10690 8.7454 2.5536 1 31909 11351 21070 21481 37727 37727 0.007558151084367637 LFPYKGYIW 9 Unmodified _LFPYKGYIW_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.81982421875 2 593.81841 1185.62227 -0.040229 -2.3889E-05 0.98551 0.00058522 0.94528 0.00056133 593.8191717612367 93.4 0.42015 87.224 87.049 87.469 -6.1757 41 29 2 0 0 0 0.14594 1 61763 61763 37.974 0 1 14227000 31910 8926 21071 21482 37728 37728 0.036880943794358245 LFPYYLFDM 9 Unmodified _LFPYYLFDM_ 0 0 0 REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF REV__ENST00000420685.1_1_21:15219408-15219965:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.8489990234375 2 604.788461 1207.56237 -0.34524 -0.0002088 -2.006 -0.0012132 -2.3513 -0.001422 604.7866663321213 98.816 0.21996 92.64 92.52 92.74 -6.1757 26 16 2 0 0 0 0.20727 1 65651 65651 7.9102 1.187 1 39950000 + 31911 26837 21072 21483 37729 37729 -0.03310964346110268 LFQASQLFP 9 Unmodified _LFQASQLFP_ 0 0 0 REV__ENSG00000162341|ENST00000294309|TPCN2 REV__ENSG00000162341|ENST00000294309|TPCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8579406738281 3 350.858804 1049.55458 -0.15198 -5.3323E-05 0.52598 0.00018455 0.374 0.00013122 350.8587755800596 35.292 0.31255 35.319 35.164 35.477 0.027401 35 14 3 0 0 0 0.49272 1 18621 18621 4.897 0 1 31510000 + 31912 21633 21073 21484 37730 37730 0.031786444485987886 LFQHITALF 9 Unmodified _LFQHITALF_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3060913085938 2 545.30821 1088.60187 0.36759 0.00020045 -0.20231 -0.00011032 0.16529 9.0132E-05 545.307927364304 79.048 0.29665 79.103 78.936 79.233 0.054977 33 11 4 0 0 0 0.037253 1 43636 43636 56.177 21.775 1 13770000 31913 718 21074 21485 37731 37731 0.06110923719575112 LFQHTYRL 8 Unmodified _LFQHTYRL_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7966918945312 2 539.295633 1076.57671 0.24783 0.00013365 -0.49893 -0.00026907 -0.25111 -0.00013542 539.2953673568969 86.218 0.35597 86.218 86.064 86.42 0 31 17 2 0 0 0 0.80624 1 47721 47721 2.8892 0 1 901820 + 31914 17961 21075 21486 37732 37732 0.04148868917036452 LFQHTYRL 8 Unmodified _LFQHTYRL_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7966918945312 2 539.295633 1076.57671 0.24783 0.00013365 -0.49893 -0.00026907 -0.25111 -0.00013542 539.2953673568969 86.218 0.35597 86.218 86.064 86.42 0 31 17 2 0 0 0 8.7369 1 47721 47721 2.8892 0 1 901820 + 31915 17961 21075 21486 37733 37733 0.04148868917036452 LFQHTYRL 8 Unmodified _LFQHTYRL_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2970581054688 2 539.295633 1076.57671 0.34239 0.00018465 -0.72386 -0.00039038 -0.38147 -0.00020573 539.2952858429793 86.752 0.40244 86.249 86.066 86.469 -0.50318 36 15 3 0 0 0 0.80044 1 47535 47535 6.3541 0 1 1767100 + 31916 17961 21075 21486 37734 37734 0.04148868917036452 LFQLCGDWH 9 Unmodified _LFQLCGDWH_ 0 0 0 REV__ENSG00000138622|ENST00000261917|HCN4;REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000138622|ENST00000261917|HCN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8971252441406 3 373.507777 1117.5015 -0.47692 -0.00017813 0.63212 0.0002361 0.15519 5.7966E-05 373.84253719554266 25.685 0.18693 25.685 25.55 25.737 0 15 8 2 0 0 0 0.21798 1 13190 13190 1.1933 0 1 529260 + 31917 20347;20657 21076 21487 37735 37735 -0.05255056605710706 LFQLFREALTW 11 Unmodified _LFQLFREALTW_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4 ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 712.3933715820312 2 712.390262 1422.76597 2.7831 0.0019826 1.4239 0.0010143 4.2069 0.002997 712.39215439697 99.876 0.18764 99.84 99.747 99.934 -0.036301 13 6 4 0 0 0 0.58219 1 55498 55498 12.241 2.8575 1 3776600 31918 9771 21077 21488 37736 37736 0.07149896419696233 LFQQKDFVSL 10 Unmodified _LFQQKDFVSL_ 0 0 0 REV__ENSG00000182022|ENST00000435907|CHST15 REV__ENSG00000182022|ENST00000435907|CHST15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8973999023438 3 408.892284 1223.65502 0.26182 0.00010706 -1.1988 -0.00049018 -0.93698 -0.00038312 408.8924246198405 23.197 0.46126 20.419 20.166 20.628 -2.7784 107 38 3 0 0 0 0.5802 1 12393 12393 12.175 1.8595 1 57583000 + 31919 23235 21078 21489 37737 37737 0.052142567116106875 LFQRFSQL 8 Unmodified _LFQRFSQL_ 0 0 0 REV__ENST00000474018.1_1_6:170089229-170089316:-|nuORF REV__ENST00000474018.1_1_6:170089229-170089316:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.293701171875 2 519.790184 1037.56581 0.99526 0.00051733 -0.044003 -2.2872E-05 0.95126 0.00049445 519.7886564876248 83.994 0.48179 77.818 77.606 78.088 -6.1757 55 25 3 0 0 0 0.6895 1 55415 55415 18.135 1.0484 1 15879000 + 31920 27553 21079 21490 37738 37738 0.04853466542749629 LFQVFATVAFF 11 Unmodified _LFQVFATVAFF_ 0 0 0 ENST00000505104.5_1_4:9882098-10027590:-|nuORF ENST00000505104.5_1_4:9882098-10027590:-|nuORF ENST00000505104.5_1_4:9882098-10027590:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.5677490234375 3 430.569142 1288.6856 NaN NaN NaN NaN NaN NaN NaN 95.428 1 89.253 88.753 89.753 -6.1757 0 0 0 0.86932 1 63208 63208 4.4062 1.2722 1 31921 14508 21080 21491 37739 37739 0.0528003509662085 LFQVQTEF 8 Unmodified _LFQVQTEF_ 0 0 0 nc|ENSG00000056586|Q9HBD1-2|RC3H2 nc|ENSG00000056586|Q9HBD1-2|RC3H2 nc|ENSG00000056586|Q9HBD1-2|RC3H2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2798767089844 2 506.260925 1010.5073 0.17207 8.7112E-05 -3.8268 -0.0019374 -3.6548 -0.0018503 506.2592239146043 50.836 0.33961 50.422 50.236 50.576 -0.41351 37 16 3 0 0 0 8.7369 1 27355 27355 23.148 3.8914 1 1650900 31922 16033 21081 21492 37740 37740 0.0024636517761109644 LFQYMFLVQ 9 Unmodified _LFQYMFLVQ_ 0 0 0 ENSG00000111817|ENST00000644252|DSE ENSG00000111817|ENST00000644252|DSE ENSG00000111817|ENST00000644252|DSE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8754577636719 3 396.875577 1187.6049 -0.45288 -0.00017974 -0.29467 -0.00011695 -0.74755 -0.00029668 396.87536804993937 21.017 0.14959 21.017 20.972 21.122 0 27 23 2 0 0 0 0.55144 1 10608 10608 2.4985 0 1 1169900 31923 2831 21082 21493 37741 37741 0.01860430782107869 LFRDTHKDFD 10 Unmodified _LFRDTHKDFD_ 0 0 0 REV__nc|ENSG00000166130|Q70UQ0|IKBIP REV__nc|ENSG00000166130|Q70UQ0|IKBIP MSMS AL20221201_MKP_PDAC_01 4 647.3139038085938 2 647.314751 1292.61495 NaN NaN NaN NaN NaN NaN NaN 98.378 1 92.203 91.703 92.703 -6.1757 0 0 0 0.61917 1 65248 65248 20.454 2.3073 1 + 31924 29760 21083 21494 37742 37742 -0.019652899589800654 LFRENLNKL 9 Unmodified _LFRENLNKL_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000133020|ENST00000403437|MYH8 ENSG00000264424|ENST00000255381|MYH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.83544921875 2 573.835123 1145.65569 0.88347 0.00050697 -0.086056 -4.9382E-05 0.79741 0.00045758 573.8350583357926 69.263 3.4407 63.087 61.02 64.461 -6.1757 400 195 3 0 0 0 0.41742 1 44708 44708 11.64 0 1 158230000 31925 10856;2625;4477 21084 21495 37743 37743 0.08869096151329359 LFRETYLKL 9 Unmodified _LFRETYLKL_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9008178710938 3 394.900891 1181.68084 0.49054 0.00019371 -0.77644 -0.00030662 -0.2859 -0.0001129 394.9005473631503 65.209 0.3098 65.209 65.035 65.345 7.6294E-06 34 14 3 0 0 0 0.15882 1 35730 35730 27.223 6.8087 1 12797000 31926 16131 21085 21496 37744 37744 0.09727150953881392 LFRKDFVLH 9 Unmodified _LFRKDFVLH_ 0 0 0 nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 nc|ENSG00000175497|Q8N608-4|DPP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2312927246094 3 392.229231 1173.66586 0.30457 0.00011946 2.9991 0.0011763 3.3037 0.0012958 392.23084018041953 25.092 0.31925 22.209 22.068 22.387 -2.8831 55 33 2 0 0 0 0.13231 1 13750 13750 29.841 9.426 1 9917600 31927 8521 21086 21497 37745 37745 0.08597703876557716 LFRKLKPQ 8 Unmodified _LFRKLKPQ_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3323364257812 2 515.332019 1028.64948 1.5221 0.00078438 -0.79861 -0.00041155 0.72349 0.00037284 515.3318654627394 106.23 0.9032 100.05 99.702 100.61 -6.1757 266 148 3 0 0 0 0.80992 1 70969 70969 0.69038 0 1 8449000 + 31928 24027 21087 21498 37746 37746 0.13630622710434181 LFRPVIVDWT 10 Unmodified _LFRPVIVDWT_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17;ENST00000550244.1_1_12:77240353-77244762:+|nuORF ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8536376953125 2 623.353148 1244.69174 0.25338 0.00015795 3.0275 0.0018872 3.2809 0.0020452 623.3549021221557 72.435 0.10617 72.477 72.442 72.548 0.041725 6 4 2 0 0 0 0.23566 1 39907 39907 7.2892 1.0834 1 1146500 31929 9520 21088 21499 37747 37747 0.07918553328181588 LFRQDPRF 8 Unmodified _LFRQDPRF_ 0 0 0 REV__ENST00000409863.5_1_7:24839804-24873723:-|nuORF REV__ENST00000409863.5_1_7:24839804-24873723:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7926635742188 2 539.793258 1077.57196 NaN NaN NaN NaN NaN NaN NaN 72.311 1 72.311 71.811 72.811 0 0 0 0 0.97444 1 40266 40266 2.8892 0 1 + 31930 17484 21089 21500 37748 37748 0.03627984774266224 LFRQGAEYPL 10 Unmodified _LFRQGAEYPL_ 0 0 0 REV__nc|ENSG00000096696|P15924-2|DSP REV__nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5490417480469 3 398.548629 1192.62406 0.27108 0.00010804 0.31462 0.00012539 0.5857 0.00023343 398.5488172265417 59.025 0.28642 58.965 58.819 59.105 -0.060719 31 13 3 0 0 0 0.66652 1 32154 32154 6.6304 0.84694 1 3564700 + 31931 17963 21090 21501 37749 37749 0.03545103397368621 LFRQRTSYRRW 11 Unmodified _LFRQRTSYRRW_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.9280395507812 2 784.931483 1567.84841 NaN NaN NaN NaN NaN NaN NaN 77.8 1 77.852 77.352 78.352 0.052452 0 0 0 0.93933 1 42948 42948 2.9952 1.6657 1 + 31932 17400 21091 21502 37750 37750 0.08720231271217926 LFRRYVLI 8 Unmodified _LFRRYVLI_ 0 0 0 REV__ENSG00000081800|ENST00000194130|SLC13A1 REV__ENSG00000081800|ENST00000194130|SLC13A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5633850097656 3 360.562321 1078.66514 0.056873 2.0506E-05 2.0124 0.00072559 2.0693 0.0007461 360.56283112498244 33.974 0.22153 34.003 33.881 34.103 0.028934 22 9 3 0 0 0 0.79887 1 17884 17884 7.2892 0 1 3709500 + 31933 17696 21092 21503 37751 37751 0.1289490922749792 LFSAPYLSY 9 Unmodified _LFSAPYLSY_ 0 0 0 ENSG00000128310|ENST00000249041|GALR3 ENSG00000128310|ENST00000249041|GALR3 ENSG00000128310|ENST00000249041|GALR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2708129882812 2 530.771126 1059.5277 -0.33369 -0.00017711 -2.2668 -0.0012031 -2.6005 -0.0013802 531.2711793271014 55.788 0.1561 55.788 55.713 55.869 0 15 11 2 0 0 0 0.28047 1 30996 30996 18.135 1.1927 1 2688300 31934 4062 21093 21504 37752 37752 0.00031535837410956447 LFSFPPGVSS 10 Unmodified _LFSFPPGVSS_ 0 0 0 ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7686157226562 2 519.26875 1036.52295 1.0882 0.00056506 0.43265 0.00022466 1.5208 0.00078972 519.2706641154984 100.5 0.17352 94.32 94.215 94.389 -6.1757 30 10 5 0 0 0 0.54684 1 67237 67237 13.906 0.39817 1 57782000 31935 14145 21094 21505 37753 37753 0.006146516946728298 LFSHIPDTWL 10 Unmodified _LFSHIPDTWL_ 0 0 0 REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.822265625 2 614.821681 1227.62881 0.42731 0.00026272 -0.43724 -0.00026882 -0.0099305 -6.1055E-06 614.8220185208826 61.422 0.17915 61.422 61.297 61.476 0 11 7 2 0 0 0 0.69377 1 34268 34268 3.5965 0 1 688280 + 31936 26140 21095 21506 37754 37754 0.02409987540113434 LFSKAGDF 8 Unmodified _LFSKAGDF_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7291259765625 2 442.729261 883.443968 0.7527 0.00033324 -0.5057 -0.00022389 0.24701 0.00010936 442.72901445269434 49.779 0.23282 49.387 49.218 49.451 -0.3923 25 11 3 0 0 0 0.63229 1 26746 26746 23.148 1.4018 1 4035600 31937 6769 21096 21507 37755 37755 -0.002415755396214081 LFSKAGDF 8 Unmodified _LFSKAGDF_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 442.729261 883.443968 0.91842 0.00040661 -0.78903 -0.00034933 0.12938 5.7282E-05 442.7289020392785 49.402 0.16196 49.358 49.235 49.397 -0.04369 -0.014219 -0.00018782 NaN 23.148 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1010800 31938 6769 21096 21507 -0.002415755396214081 LFSKLFSRS 9 Unmodified _LFSKLFSRS_ 0 0 0 ENSG00000135537|ENST00000368977|AFG1L ENSG00000135537|ENST00000368977|AFG1L ENSG00000135537|ENST00000368977|AFG1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.811767578125 2 542.811116 1083.60768 NaN NaN NaN NaN NaN NaN NaN 59.958 1 59.905 59.405 60.405 -0.053062 0 0 0 0.82739 1 32692 32692 4.3292 0 1 31939 4718 21097 21508 37756 37756 0.06922022231287883 LFSLAQYYCS 10 Unmodified _LFSLAQYYCS_ 0 0 0 ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23 ENST00000486274.5_1_3:99980342-100042509:+|nuORF ENST00000486274.5_1_3:99980342-100042509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.780029296875 2 597.778625 1193.5427 0.33332 0.00019925 3.2882 0.0019656 3.6215 0.0021648 597.7804747836591 58.913 0.2642 58.852 58.699 58.964 -0.060722 22 12 2 0 0 0 0.66569 1 32094 32094 6.7232 0.99131 1 2587800 31940 620 21098 21509 37757 37757 -0.04633340356872395 LFSLSFFSF 9 Unmodified _LFSLSFFSF_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3010864257812 2 547.781493 1093.54843 3.396 0.0018603 1.4697 0.00080507 4.8657 0.0026653 547.78235732344 99.577 0.13162 99.54 99.452 99.583 -0.036301 9 4 3 0 0 0 0.20528 1 55298 55298 8.5933 2.2392 1 1322100 + 31941 24045 21099 21510 37758 37758 0.005401262170835253 LFSLVGLIIF 10 Unmodified _LFSLVGLIIF_ 0 0 0 REV__ENST00000361758.8_1_6:163994631-163994688:+|nuORF REV__ENST00000361758.8_1_6:163994631-163994688:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.2603149414062 2 561.352086 1120.68962 0.96807 0.00054343 3.1181 0.0017503 4.0862 0.0022938 561.3540009134937 100.77 0.082542 100.73 100.68 100.76 -0.04216 4 2 2 0 0 0 0.50944 1 55975 55975 15.847 5.0233 1 2179100 + 31942 25938 21100 21511 37759 37759 0.1341012459038211 LFSNHHCIF 9 Unmodified _LFSNHHCIF_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2662963867188 2 559.266019 1116.51748 -0.26623 -0.00014889 -0.059115 -3.3061E-05 -0.32534 -0.00018195 559.2659819227031 77.229 0.39764 76.746 76.558 76.956 -0.4826 28 17 2 0 0 0 0.30562 1 42261 42261 16.942 1.0951 1 2962700 + 31943 22405 21101 21512 37760 37760 -0.036113503688284254 LFSNHHCIF 9 Unmodified _LFSNHHCIF_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2661743164062 2 559.266019 1116.51748 0.77217 0.00043185 -1.4577 -0.00081524 -0.68552 -0.00038339 559.2655651725414 84.345 0.28561 78.169 78.033 78.318 -6.1757 26 15 3 0 0 0 0.06187 1 55492 55492 42.095 2.1372 1 10040000 + 31944 22405 21101 21512 37761 37761 -0.036113503688284254 LFSNHHCIF 9 Unmodified _LFSNHHCIF_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.266019 1116.51748 -0.26623 -0.00014889 -0.059115 -3.3061E-05 -0.32534 -0.00018195 559.2659819227031 77.229 0.39764 76.746 76.558 76.956 -0.4826 -0.0047233 -0.0001474 NaN 16.942 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2962700 + 31945 22405 21101 21512 -0.036113503688284254 LFSNHHCIF 9 Unmodified _LFSNHHCIF_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.266019 1116.51748 0.49272 0.00027556 0.57905 0.00032384 1.0718 0.0005994 559.2667123587801 76.706 0.34251 76.756 76.591 76.934 0.05011 0.0047233 0.00056641 NaN 16.942 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4172600 + 31946 22405 21101 21512 -0.036113503688284254 LFSNVFYLW 9 Unmodified _LFSNVFYLW_ 0 0 0 REV__ENSG00000173890|ENST00000355897|GPR160 REV__ENSG00000173890|ENST00000355897|GPR160 MSMS AL20221201_MKP_PDAC_01 4 396.8751220703125 3 396.874454 1187.60153 NaN NaN NaN NaN NaN NaN NaN 23.686 1 20.859 20.359 21.359 -2.8273 0 0 0 0.61214 1 12832 12832 8.4443 0 1 + 31947 22756 21102 21513 37762 37762 0.015235039997378408 LFSPQLLLF 9 Unmodified _LFSPQLLLF_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.321533203125 2 539.320786 1076.62702 1.0179 0.00054896 0.49573 0.00026736 1.5136 0.00081631 539.3211329912006 102.53 0.14455 96.352 96.292 96.437 -6.1757 34 21 3 0 0 0 0.026094 1 68803 68803 57.471 17.514 1 12005000 31948 3801 21103 21514 37763 37763 0.0917697852216861 LFSQDISVKM 10 Unmodified _LFSQDISVKM_ 0 0 0 nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 MSMS AL20221201_MKP_PDAC_01 4 584.3060913085938 2 584.307549 1166.60055 NaN NaN NaN NaN NaN NaN NaN 64.061 1 57.886 57.386 58.386 -6.1757 0 0 0 0.77204 1 41472 41472 20.415 7.883 1 31949 6127 21104 21515 37764 37764 0.023909215685307572 LFSQPFGDFC 10 Unmodified _LFSQPFGDFC_ 0 0 0 ENST00000333751.4_1_17:7255914-7256001:+|nuORF ENST00000333751.4_1_17:7255914-7256001:+|nuORF ENST00000333751.4_1_17:7255914-7256001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.756591796875 2 580.757692 1159.50083 -0.016236 -9.4292E-06 -1.1884 -0.00069016 -1.2046 -0.00069959 580.7572921273627 31.665 0.41814 31.665 31.482 31.9 0 81 20 6 0 0 0 0.50362 1 16443 16443 16.149 2.2431 1 94220000 31950 11882 21105 21516 37765 37765 -0.07253896045403962 LFSQQHFL 8 Unmodified _LFSQQHFL_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2693786621094 2 510.269084 1018.52362 0.77956 0.00039778 1.2862 0.00065632 2.0658 0.0010541 510.2695706693616 42.497 0.51159 37.812 37.544 38.055 -4.6846 61 33 2 0 0 0 0.65867 1 25624 25624 20.871 3.9289 1 43719000 31951 9016 21106 21517 37766 37766 0.015094911343794593 LFSQSFFS 8 Unmodified _LFSQSFFS_ 0 0 0 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 REV__nc|ENSG00000157077|O95405-2|ZFYVE9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 962.4635620117188 1 962.46181 961.454533 0.40796 0.00039265 -1.0898 -0.0010489 -0.68186 -0.00065626 962.4610189260036 84.99 0.32401 84.489 84.3 84.624 -0.5015 25 15 2 0 0 0 0.72953 1 46433 46433 14.582 1.0738 1 2010700 + 31952 21361 21107 21518 37767 37767 -0.02773592885182552 LFSSDMWA 8 Unmodified _LFSSDMWA_ 0 0 0 ENST00000403683.1_1_1:149825385-149825556:+|nuORF ENST00000403683.1_1_1:149825385-149825556:+|nuORF ENST00000403683.1_1_1:149825385-149825556:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.0809326171875 1 956.41823 955.410954 0.35188 0.00033655 -0.92928 -0.00088878 -0.57739 -0.00055223 956.417434874822 90.408 0.29273 89.913 89.781 90.074 -0.49457 27 13 3 0 0 0 0.74163 1 49417 49417 13.508 1.8676 1 829380 31953 12907 21108 21519 37768 37768 -0.06853525653980341 LFSSDMWA 8 Unmodified _LFSSDMWA_ 0 0 0 ENST00000403683.1_1_1:149825385-149825556:+|nuORF ENST00000403683.1_1_1:149825385-149825556:+|nuORF ENST00000403683.1_1_1:149825385-149825556:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.4182739257812 1 956.41823 955.410954 0.80029 0.00076541 -0.29164 -0.00027893 0.50865 0.00048649 956.4179173724771 99.467 0.21528 93.292 93.201 93.416 -6.1757 31 13 3 0 0 0 0.21786 1 66217 66217 67.035 0 1 56218000 31954 12907 21108 21519 37769 37769 -0.06853525653980341 LFSSEKFSF 9 Unmodified _LFSSEKFSF_ 0 0 0 ENST00000463882.1_1_2:179314855-179315757:-|nuORF ENST00000463882.1_1_2:179314855-179315757:-|nuORF ENST00000463882.1_1_2:179314855-179315757:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 546.2750854492188 2 546.274032 1090.53351 NaN NaN NaN NaN NaN NaN NaN 88.834 1 82.658 82.158 83.158 -6.1757 0 0 0 0.6032 1 58622 58622 12.532 0.89125 1 31955 13705 21109 21520 37770 37770 -0.008133656509016873 LFSVAMLFLSY 11 Oxidation (M) _LFSVAM(Oxidation (M))LFLSY_ LFSVAM(1)LFLSY LFSVAM(48)LFLSY 0 0 1 REV__ENSG00000121274|ENST00000561678|TENT4B REV__ENSG00000121274|ENST00000561678|TENT4B MSMS AL20221201_MKP_PDAC_01 4 653.8427734375 2 653.841225 1305.6679 NaN NaN NaN NaN NaN NaN NaN 52.272 1 46.537 46.037 47.037 -5.7345 0 0 0 0.11822 1 32992 32992 47.749 7.799 1 + 31956 19284 21110 21521 37771 37771 1837 0.027289517794997664 LFSVAPPE 8 Unmodified _LFSVAPPE_ 0 0 0 REV__ENST00000515004.5_3_4:1173253-1188902:-|nuORF REV__ENST00000515004.5_3_4:1173253-1188902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.456298828125 1 859.455996 858.448719 -1.3785 -0.0011848 0.56048 0.00048171 -0.81801 -0.00070304 859.4563315780127 77.97 0.56645 77.488 77.215 77.782 -0.4826 108 38 3 0 0 0 0.18881 1 42586 42586 74.396 0 1 67999000 + 31957 28202 21111 21522 37772 37772 0.013833086031354469 LFSYWDIQVF 10 Unmodified _LFSYWDIQVF_ 0 0 0 nc|ENSG00000181652|Q674R7-3|ATG9B;ENSG00000181652|ENST00000639579|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.32958984375 2 659.329339 1316.64412 0.097006 6.3959E-05 -2.2733 -0.0014988 -2.1763 -0.0014349 659.3278613679104 65.694 0.20828 65.21 65.081 65.289 -0.48428 18 8 3 0 0 0 0.64628 1 35850 35850 8.7454 3.4485 1 1943700 31958 8985 21112 21523 37773 37773 -0.0015314566269353236 LFSYWDIQVF 10 Unmodified _LFSYWDIQVF_ 0 0 0 nc|ENSG00000181652|Q674R7-3|ATG9B;ENSG00000181652|ENST00000639579|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 659.329339 1316.64412 0.9576 0.00063137 -3.3789 -0.0022278 -2.4214 -0.0015965 659.3275704398982 65.23 0.24655 65.23 65.035 65.282 7.6294E-06 0.010254 -0.00085649 NaN 8.7454 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5894700 31959 8985 21112 21523 -0.0015314566269353236 LFTAPFWK 8 Unmodified _LFTAPFWK_ 0 0 0 REV__ENST00000535315.5_1_12:66006973-66035915:-|nuORF REV__ENST00000535315.5_1_12:66006973-66035915:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.2818908691406 2 505.278921 1008.54329 NaN NaN NaN NaN NaN NaN NaN 102.31 1 96.135 95.635 96.635 -6.1757 0 0 0 0.97348 1 68661 68661 5.7604 0 1 + 31960 28524 21113 21524 37774 37774 0.039358671451282135 LFTCSGKTVL 10 Unmodified _LFTCSGKTVL_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000470338.1_1_22:22316666-22317191:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7959594726562 2 534.791535 1067.56852 1.0036 0.0005367 2.6507 0.0014176 3.6543 0.0019543 534.7933469350644 58.321 0.512 52.247 52.015 52.527 -6.0745 76 27 3 0 0 0 0.13391 1 37300 37300 41.84 3.6641 1 105840000 31961 1745 21114 21525 37775 37775 0.037435538853969774 LFTEATRILFF 11 Unmodified _LFTEATRILFF_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.8775634765625 2 679.379363 1356.74417 0.72013 0.00048924 -0.02696 -1.8316E-05 0.69317 0.00047093 679.3797655529535 100.67 0.096825 94.49 94.431 94.528 -6.1757 9 6 2 0 0 0 1.4363E-11 1 67379 67379 128.58 80.83 1 19247000 31962 1696 21115 21526 37776 37776 0.08007091671106537 LFTGTGMTLK 10 Unmodified _LFTGTGMTLK_ 0 0 0 REV__nc|ENSG00000175066|Q6ZS86-3|GK5 REV__nc|ENSG00000175066|Q6ZS86-3|GK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7952880859375 2 534.791535 1067.56852 1.0036 0.0005367 2.6507 0.0014176 3.6543 0.0019543 534.7933469350644 58.321 0.512 52.247 52.015 52.527 -6.0745 76 27 3 0 0 0 0.16361 1 37421 37421 38.176 0 1 105840000 + 31963 22836 21116 21527 37777 37777 0.037435538853969774 LFTGYSNF 8 Unmodified _LFTGYSNF_ 0 0 0 REV__EFEMP2|p.R216C|1|0.21|ENSG00000172638|chr11:65869938-65869938|G/A|missense_variant REV__EFEMP2|p.R216C|1|0.21|ENSG00000172638|chr11:65869938-65869938|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7256469726562 2 474.726718 947.438883 0.99904 0.00047427 -1.5567 -0.000739 -0.55764 -0.00026473 474.72581327649317 80.47 0.32158 79.978 79.83 80.152 -0.49247 20 12 2 0 0 0 0.79783 1 44082 44082 7.9102 0 1 541420 + 31964 16918 21117 21528 37778 37778 -0.03693879402237599 LFTHGELFI 9 Unmodified _LFTHGELFI_ 0 0 0 REV__ENSG00000185010|ENST00000360256|F8 REV__ENSG00000185010|ENST00000360256|F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7907104492188 2 538.792392 1075.57023 0.57694 0.00031085 0.4963 0.0002674 1.0732 0.00057825 538.7926671772474 74.086 0.37733 73.61 73.487 73.864 -0.47588 37 15 3 0 0 0 0.18465 1 40542 40542 24.674 1.5255 1 1116800 + 31965 23462 21118 21529 37779 37779 0.035469309656718906 LFTLVETPE 9 Unmodified _LFTLVETPE_ 0 0 0 STXBP5|p.P1036L|1|0.17|ENSG00000164506|chr6:147373756-147373756|C/T|missense_variant STXBP5|p.P1036L|1|0.17|ENSG00000164506|chr6:147373756-147373756|C/T|missense_variant STXBP5|p.P1036L|1|0.17|ENSG00000164506|chr6:147373756-147373756|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7830810546875 2 524.78169 1047.54883 1.1149 0.00058508 1.222 0.00064127 2.3369 0.0012264 524.78240276234 21.823 0.41776 19.088 18.917 19.335 -2.7348 50 23 3 0 0 0 0.49766 1 11678 11678 3.9444 0 1 3462000 31966 30176 21119 21530 37780 37780 0.02695501146308743 LFTNKKTTI 9 Unmodified _LFTNKKTTI_ 0 0 0 ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12 ENSG00000148848|ENST00000448723|ADAM12 ENSG00000148848|ENST00000448723|ADAM12 MSMS AL20221201_MKP_PDAC_01 4 533.3184204101562 2 533.318774 1064.623 NaN NaN NaN NaN NaN NaN NaN 26.818 1 23.781 23.281 24.281 -3.0365 0 0 0 0.50458 1 14816 14816 11.495 0 1 31967 5971 21120 21531 37781 37781 0.09326889028466212 LFTPLNMVRF 10 Unmodified _LFTPLNMVRF_ 0 0 0 ENST00000535734.5_1_12:15811000-15814989:-|nuORF ENST00000535734.5_1_12:15811000-15814989:-|nuORF ENST00000535734.5_1_12:15811000-15814989:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 619.3447875976562 2 619.341726 1236.6689 NaN NaN NaN NaN NaN NaN NaN 81.162 1 74.986 74.486 75.486 -6.1757 0 0 0 0.87645 1 53261 53261 10.074 1.3285 1 31968 14976 21121 21532 37782 37782 0.06003210939047676 LFTSEQSH 8 Unmodified _LFTSEQSH_ 0 0 0 nc|ENSG00000128683|Q99259-4|GAD1;ENSG00000128683|ENST00000358196|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 nc|ENSG00000128683|Q99259-4|GAD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.7438049316406 2 474.724707 947.43486 1.1454 0.00054375 1.3148 0.00062416 2.4602 0.0011679 474.72471849368884 88.405 0.32761 82.23 82.096 82.424 -6.1757 22 17 2 0 0 0 8.7369 1 58370 58370 30.225 0 1 7773200 31969 4084 21122 21533 37783 37783 -0.040959688959446794 LFTSQETLI 9 Unmodified _LFTSQETLI_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2876586914062 2 526.28714 1050.55973 0.6549 0.00034467 0.47524 0.00025011 1.1301 0.00059478 526.2870052729941 49.56 0.43104 49.168 48.964 49.395 -0.3923 77 21 5 0 0 0 0.028475 1 26687 26687 56.177 0 1 127480000 31970 583 21123 21534 37784 37784 0.036469035205982436 LFTSQETLI 9 Unmodified _LFTSQETLI_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;ENST00000527126.1_1_11:47843172-47843701:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.2687377929688 2 526.28714 1050.55973 0.26228 0.00013804 1.2155 0.00063972 1.4778 0.00077775 526.2876599712565 56.104 0.76153 50.127 49.614 50.375 -5.9769 145 44 5 0 0 0 0.1176 1 35861 35861 36.127 0 1 448260000 31971 583 21123 21534 37785 37785 0.036469035205982436 LFTTAYCLF 9 Unmodified _LFTTAYCLF_ 0 0 0 REV__nc|ENSG00000124493|Q14833-5|GRM4;REV__nc|ENSG00000124493|Q14833-3|GRM4 REV__nc|ENSG00000124493|Q14833-5|GRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.765869140625 2 539.767529 1077.5205 NaN NaN NaN NaN NaN NaN NaN 73.024 1 72.548 72.048 73.048 -0.47588 0 0 0 0.82015 1 39961 39961 5.2307 0.33366 1 + 31972 29615;19451 21124 21535 37786 37786 -0.015155200346498532 LFTTFELFL 9 Unmodified _LFTTFELFL_ 0 0 0 ENSG00000127412|ENST00000265310|TRPV5 ENSG00000127412|ENST00000265310|TRPV5 ENSG00000127412|ENST00000265310|TRPV5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5423889160156 3 377.542593 1129.60595 1.7164 0.000648 -1.557 -0.00058785 0.15933 6.0153E-05 377.541982807248 86.654 0.66512 80.478 80.23 80.895 -6.1757 57 35 3 0 0 0 0.32871 1 57173 57173 10.8 2.8541 1 22732000 31973 4004 21125 21536 37787 37787 0.04632968422652084 LFVCLFVL 8 Unmodified _LFVCLFVL_ 0 0 0 ENST00000447070.1_1_2:27581093-27581231:+|nuORF ENST00000447070.1_1_2:27581093-27581231:+|nuORF ENST00000447070.1_1_2:27581093-27581231:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 477.2650451660156 2 477.280075 952.545597 0.72487 0.00034596 0.59592 0.00028442 1.3208 0.00063039 477.2803900324528 38.349 0.29699 33.98 33.795 34.092 -4.3689 27 17 2 0 0 0 8.7369 1 22490 22490 17.087 0 1 12181000 31974 13476 21126 21537 37788 37788 0.06742579558579109 LFVETDKPII 10 Unmodified _LFVETDKPII_ 0 0 0 REV__nc|ENSG00000197408|P20813-2|CYP2B6 REV__nc|ENSG00000197408|P20813-2|CYP2B6 MSMS AL20221201_MKP_PDAC_01 4 392.2295837402344 3 392.228785 1173.66453 NaN NaN NaN NaN NaN NaN NaN 76.606 1 70.431 69.931 70.931 -6.1757 0 0 0 0.68942 1 50110 50110 14.957 0 1 + 31975 23923 21127 21538 37789 37789 0.08464024997147135 LFVFCCRTL 9 Carbamidomethyl (C) _LFVFCC(Carbamidomethyl (C))RTL_ LFVFC(0.29)C(0.71)RTL LFVFC(-3.9)C(3.9)RTL 0 1 0 REV__ENSG00000182575|ENST00000328741|NXPH3 REV__ENSG00000182575|ENST00000328741|NXPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7936401367188 2 579.793555 1157.57256 0.612 0.00035484 -0.87359 -0.0005065 -0.26158 -0.00015166 579.7930387933102 47.834 0.2079 47.481 47.347 47.555 -0.3526 20 9 3 0 0 0 0.023481 1 25634 25634 60.074 6.4983 2 6201600 + 31976 23279 21128 21539 37790 37790 1049 7.320107442865265E-05 LFVFCCRTL 9 Carbamidomethyl (C) _LFVFCC(Carbamidomethyl (C))RTL_ 0 1 0 REV__ENSG00000182575|ENST00000328741|NXPH3 REV__ENSG00000182575|ENST00000328741|NXPH3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 579.793555 1157.57256 0.612 0.00035484 -0.87359 -0.0005065 -0.26158 -0.00015166 579.7930387933102 47.834 0.2079 47.481 47.347 47.555 -0.3526 -0.058969 -0.00013605 NaN 60.074 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 6201600 + 31977 23279 21128 21539 1049 7.320107442865265E-05 LFVFYFLFRRK 11 Unmodified _LFVFYFLFRRK_ 0 0 0 REV__ENST00000264203.7_1_1:19665365-19665608:-|nuORF REV__ENST00000264203.7_1_1:19665365-19665608:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.7275085449219 4 384.727595 1534.88128 -0.0046787 -1.8E-06 -0.70556 -0.00027145 -0.71024 -0.00027325 384.72736442315585 14.092 0.26978 14.1 13.995 14.265 0.0073986 17 11 2 0 0 0 0.74046 1 6969 6969 0.45452 0 1 13489000 + 31978 25064 21129 21540 37791 37791 0.13523045341298712 LFVPKLLQKR 10 Unmodified _LFVPKLLQKR_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MSMS AL20221201_MKP_PDAC_01 4 621.410400390625 2 621.408258 1240.80196 NaN NaN NaN NaN NaN NaN NaN 105.68 1 99.502 99.002 100 -6.1757 0 0 0 1.0024 1 70791 70791 0.40072 0 1 + 31979 23860 21130 21541 37792 37792 0.19119398387192632 LFVTPYPYSVL 11 Unmodified _LFVTPYPYSVL_ 0 0 0 REV__ENST00000393800.6_2_11:68228258-68287015:+|nuORF REV__ENST00000393800.6_2_11:68228258-68287015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.854736328125 2 649.855189 1297.69583 -0.029908 -1.9436E-05 -2.0417 -0.0013268 -2.0716 -0.0013463 649.8537136636046 81.968 0.27473 81.968 81.857 82.132 0 40 15 3 0 0 0 0.69316 1 45545 45545 4.897 2.1618 1 1242500 + 31980 26428 21131 21542 37793 37793 0.05888598031219772 LFVVNHPEF 9 Unmodified _LFVVNHPEF_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2916259765625 2 551.290017 1100.56548 -0.2464 -0.00013584 -0.30922 -0.00017047 -0.55562 -0.00030631 551.2899058049726 61.1 0.17888 60.611 60.516 60.694 -0.48932 18 8 3 0 0 0 0.044011 1 33279 33279 47.749 23.075 1 4227100 31981 2371 21132 21543 37794 37794 0.019220468228922982 LFVVNHPEF 9 Unmodified _LFVVNHPEF_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.2909545898438 2 551.290017 1100.56548 0.33963 0.00018723 -0.3418 -0.00018843 -0.0021725 -1.1977E-06 551.2899699114007 60.687 0.23152 60.643 60.533 60.765 -0.04351 13 11 2 0 0 0 0.028475 1 33108 33108 56.177 30.778 1 4750400 31982 2371 21132 21543 37795 37795 0.019220468228922982 LFVWEEPTF 9 Unmodified _LFVWEEPTF_ 0 0 0 REV__ENSG00000160961|ENST00000292530|ZNF333 REV__ENSG00000160961|ENST00000292530|ZNF333 MSMS AL20221201_MKP_PDAC_01 4 389.8630676269531 3 389.862214 1166.56481 NaN NaN NaN NaN NaN NaN NaN 44.973 1 40.121 39.621 40.621 -4.852 0 0 0 0.7453 1 27525 27525 4.897 1.0511 1 + 31983 21576 21133 21544 37796 37796 -0.011807926168330596 LFWLCKLFRKR 11 Unmodified _LFWLCKLFRKR_ 0 0 0 REV__ENST00000381086.9_1_7:45953275-45953332:-|nuORF REV__ENST00000381086.9_1_7:45953275-45953332:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 755.4485473632812 2 755.447391 1508.88023 NaN NaN NaN NaN NaN NaN NaN 87.293 1 87.351 86.851 87.851 0.05822 0 0 0 0.94144 1 48525 48525 1.4819 0 1 + 31984 26327 21134 21545 37797 37797 0.14614507700753165 LFYFSFGRR 9 Unmodified _LFYFSFGRR_ 0 0 0 ENST00000337198.9_1_8:103876109-103876346:-|nuORF ENST00000337198.9_1_8:103876109-103876346:-|nuORF ENST00000337198.9_1_8:103876109-103876346:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8162231445312 2 596.816733 1191.61891 -0.015813 -9.4373E-06 -0.53485 -0.00031921 -0.55067 -0.00032865 596.816553610483 27.963 0.55006 24.815 24.547 25.097 -3.1482 79 29 3 0 0 0 0.56862 1 15563 15563 3.2813 0 1 49749000 31985 11923 21135 21546 37798 37798 0.030768443254146405 LFYFTLDVLE 10 Unmodified _LFYFTLDVLE_ 0 0 0 CON__Q58D62 CON__Q58D62 CON__Q58D62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3404541015625 2 630.331547 1258.64854 1.0979 0.00069204 1.8728 0.0011805 2.9706 0.0018725 630.332235470864 98.03 0.26952 91.854 91.716 91.985 -6.1757 42 16 3 0 0 0 0.52888 1 65071 65071 14.838 0.6201 1 73893000 + 31986 206 21136 21547 37799 37799 0.02956318760220711 LFYHYRQPP 9 Unmodified _LFYHYRQPP_ 0 0 0 REV__ENSG00000117419|ENST00000372257|ERI3 REV__ENSG00000117419|ENST00000372257|ERI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.81396484375 2 610.81419 1219.61383 -0.010622 -6.4884E-06 -0.31559 -0.00019277 -0.32622 -0.00019926 610.8140334144255 36.361 0.18679 36.386 36.25 36.437 0.024967 12 7 2 0 0 0 0.59218 1 19270 19270 1.8442 0.19162 1 2065300 + 31987 19104 21137 21548 37800 37800 0.012805404627897587 LFYKFFEY 8 Unmodified _LFYKFFEY_ 0 0 0 REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37 REV__nc|ENSG00000147454|Q9NYZ2-4|SLC25A37 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.2178649902344 3 386.195304 1155.56408 1.0769 0.00041591 0.32414 0.00012518 1.4011 0.00054109 386.1954768715251 43.572 0.28974 38.807 38.677 38.967 -4.7648 32 17 2 0 0 0 8.7369 1 26546 26546 10.824 0 1 8433900 + 31988 20889 21138 21549 37801 37801 -0.007475872658460503 LFYKFYWRTHY 11 Unmodified _LFYKFYWRTHY_ 0 0 0 REV__nc|ENSG00000136895|Q5VVW2-3|GARNL3 REV__nc|ENSG00000136895|Q5VVW2-3|GARNL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.94140625 3 541.94175 1622.80342 NaN NaN NaN NaN NaN NaN NaN 22.996 1 22.996 22.496 23.496 0 0 0 0 0.94337 1 11711 11711 0.094841 0.094841 1 + 31989 20196 21139 21550 37802 37802 0.016929876853055248 LFYLQRYNFRW 11 Unmodified _LFYLQRYNFRW_ 0 0 0 REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.7835693359375 3 535.949016 1604.82522 1.0485 0.00056195 1.4166 0.00075923 2.4651 0.0013212 536.2845276356976 89.666 0.61053 83.49 83.273 83.883 -6.1757 45 33 2 0 0 0 0.3058 1 59412 59412 0.094841 0 1 53361000 + 31990 27309 21140 21551 37803 37803 0.04699792433871153 LFYMVLTL 8 Unmodified _LFYMVLTL_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2825622558594 2 500.282815 998.551076 -0.64037 -0.00032037 -0.36149 -0.00018085 -1.0019 -0.00050121 500.28267617244603 35.682 0.17402 35.46 35.372 35.546 -0.2224 10 7 2 0 0 0 0.50586 1 18717 18717 34.187 6.0141 1 2215900 31991 9504 21141 21552 37804 37804 0.05174258350393757 LFYNIHIRF 9 Unmodified _LFYNIHIRF_ 0 0 0 REV__ENST00000326648.4_1_15:64976657-64976837:+|nuORF REV__ENST00000326648.4_1_15:64976657-64976837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3472290039062 2 611.840208 1221.66586 3.1412 0.0019219 0.12908 7.8978E-05 3.2703 0.0020009 612.3416688494236 97.104 1.0854 97.097 96.826 97.911 -0.007019 113 40 3 0 0 0 0.58865 1 54340 54340 2.0598 0.21551 1 81982000 + 31992 25562 21142 21553 37805 37805 0.06389703876538988 LFYRDPLK 8 Unmodified _LFYRDPLK_ 0 0 0 nc|ENSG00000091128|A4D0S4-2|LAMB4;ENST00000475469.1_1_7:107703197-107763609:-|nuORF;nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 nc|ENSG00000091128|A4D0S4-2|LAMB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3034057617188 2 526.300384 1050.58622 1.1381 0.00059899 -0.78691 -0.00041415 0.3512 0.00018483 526.3001117294042 88.963 1.478 82.787 81.956 83.434 -6.1757 277 82 5 0 0 0 0.7643 1 58231 58231 14.838 1.3304 1 70972000 31993 1580 21143 21554 37806 37806 0.06294637202563536 LFYWTQHEEE 10 Unmodified _LFYWTQHEEE_ 0 0 0 REV__nc|ENSG00000174227|Q5H8A4-3|PIGG REV__nc|ENSG00000174227|Q5H8A4-3|PIGG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2057495117188 3 461.20682 1380.59863 0.3348 0.00015441 -0.61309 -0.00028276 -0.2783 -0.00012835 461.5411862676333 28.076 0.15109 28.106 28.012 28.163 0.029564 11 5 3 0 0 0 0.71123 1 14630 14630 0.69767 0 1 1470000 + 31994 22775 21144 21555 37807 37807 -0.0764441591566083 LFYYMSTCLC 10 Unmodified _LFYYMSTCLC_ 0 0 0 REV__ENSG00000172772|ENST00000395079|OR10W1 REV__ENSG00000172772|ENST00000395079|OR10W1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.1780700683594 3 415.178051 1242.51232 0.26399 0.0001096 -0.23308 -9.6769E-05 0.030909 1.2833E-05 415.1779728074987 53.394 0.21769 53.394 53.244 53.462 0 23 9 4 0 0 0 0.64183 1 29581 29581 8.9762 2.7844 1 3646300 + 31995 22674 21145 21556 37808 37808 -0.09923158337915083 LFYYMSTCLC 10 Unmodified _LFYYMSTCLC_ 0 0 0 REV__ENSG00000172772|ENST00000395079|OR10W1 REV__ENSG00000172772|ENST00000395079|OR10W1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 415.178051 1242.51232 0.26399 0.0001096 -0.23308 -9.6769E-05 0.030909 1.2833E-05 415.1779728074987 53.394 0.21769 53.394 53.244 53.462 0 -0.049632 -8.9945E-05 NaN 8.9762 23 9 4 NaN NaN NaN NaN 0 NaN NaN 0 3646300 + 31996 22674 21145 21556 -0.09923158337915083 LFYYMSTCLC 10 Unmodified _LFYYMSTCLC_ 0 0 0 REV__ENSG00000172772|ENST00000395079|OR10W1 REV__ENSG00000172772|ENST00000395079|OR10W1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 415.178051 1242.51232 0.35483 0.00014732 0.65394 0.0002715 1.0088 0.00041882 415.17839515623837 53.96 0.10127 53.493 53.446 53.547 -0.46664 0.049632 0.0010149 NaN 8.9762 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 708890 + 31997 22674 21145 21556 -0.09923158337915083 LGAAAALPL 9 Unmodified _LGAAAALPL_ 0 0 0 ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF ENST00000320017.10_1_3:47459280-47460886:-|nuORF ENST00000320017.10_1_3:47459280-47460886:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 398.7503356933594 2 398.749996 795.485439 NaN NaN NaN NaN NaN NaN NaN 38.602 1 34.233 33.733 34.733 -4.3689 0 0 0 0.70111 1 22793 22793 9.3474 0 1 31998 11331 21146 21557 37809 37809 0.07951605219716384 LGAAAFQPLI 10 Unmodified _LGAAAFQPLI_ 0 0 0 ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7941589355469 2 500.794935 999.575317 -0.0045858 -2.2966E-06 0.39593 0.00019828 0.39135 0.00019599 500.79514348393855 66.774 0.58453 66.291 65.984 66.569 -0.48323 85 27 4 0 0 0 0.2829 1 36356 36356 28.487 3.0875 1 24931000 31999 8465 21147 21558 37810 37810 0.07551234828292763 LGAALEMF 8 Unmodified _LGAALEMF_ 0 0 0 ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2196350097656 2 426.220214 850.425876 NaN NaN NaN NaN NaN NaN NaN 22.452 1 22.475 21.975 22.975 0.022896 0 0 0 0.97444 1 11422 11422 2.8892 0 1 32000 3508 21148 21559 37811 37811 -0.005320337859757274 LGAALTPF 8 Unmodified _LGAALTPF_ 0 0 0 ENSG00000011198|ENST00000644371|ABHD5 ENSG00000011198|ENST00000644371|ABHD5 ENSG00000011198|ENST00000644371|ABHD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2291564941406 2 395.228897 788.44324 0.5293 0.0002092 0.046035 1.8194E-05 0.57534 0.00022739 395.22883317497883 65.65 0.97223 59.474 59.184 60.156 -6.1757 138 56 3 0 0 0 0.19755 5 42765 42495;42629;42765;42904;43052 70.865 11.069 1 266820000 32001 437 21149 21560 37812;37813;37814;37815;37816 37814 0.040556298113301636 LGAARGARRPR 11 Unmodified _LGAARGARRPR_ 0 0 0 REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.2445983886719 3 394.242645 1179.70611 NaN NaN NaN NaN NaN NaN NaN 108.85 1 102.67 102.17 103.17 -6.1757 0 0 0 0.94165 1 72726 72726 0.45452 0.21867 1 + 32002 25727 21150 21561 37817 37817 0.12344063319710585 LGAAVLLPA 9 Unmodified _LGAAVLLPA_ 0 0 0 ENST00000396920.7_3_10:13344112-13344301:-|nuORF ENST00000396920.7_3_10:13344112-13344301:-|nuORF ENST00000396920.7_3_10:13344112-13344301:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.5238647460938 1 824.524016 823.516739 0.17113 0.0001411 0.78896 0.00065052 0.96009 0.00079162 824.5245871438972 82.424 0.45782 81.929 81.698 82.156 -0.4952 47 18 3 0 0 0 0.085487 1 45045 45045 36.466 0 1 9100100 32003 12810 21151 21562 37818 37818 0.0979217825380374 LGADETDE 8 Unmodified _LGADETDE_ 0 0 0 REV__ENSG00000158417|ENST00000289371|EIF5B REV__ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.9203491210938 1 849.347233 848.339957 2.034 0.0017276 -0.14659 -0.0001245 1.8874 0.0016031 849.347847082278 93.245 0.11282 93.268 93.214 93.327 0.02298 5 3 2 0 0 0 0.80624 1 51842 51842 2.8892 0 1 1545600 + 32004 21429 21152 21563 37819 37819 -0.09027947157801464 LGADINSK 8 Unmodified _LGADINSK_ 0 0 0 ENSG00000134461|ENST00000380094|ANKRD16 ENSG00000134461|ENST00000380094|ANKRD16 ENSG00000134461|ENST00000380094|ANKRD16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 817.4402465820312 1 817.441409 816.434132 0.18836 0.00015397 -0.34543 -0.00028237 -0.15707 -0.0001284 817.4411431365636 38.34 0.30035 38.34 38.235 38.535 0 47 25 2 0 0 0 0.056242 2 20431 20431;20540 131.27 26.468 1 19131000 32005 4611 21153 21564 37820;37821 37820 0.0185723645500957 LGADINSK 8 Unmodified _LGADINSK_ 0 0 0 ENSG00000134461|ENST00000380094|ANKRD16 ENSG00000134461|ENST00000380094|ANKRD16 ENSG00000134461|ENST00000380094|ANKRD16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 817.4397583007812 1 817.441409 816.434132 -0.41755 -0.00034132 -0.010458 -8.5491E-06 -0.42801 -0.00034987 817.44158788732 38.633 0.28139 38.346 38.217 38.498 -0.28687 23 13 2 0 0 0 0.056242 1 20315 20315 131.27 26.468 1 6668700 32006 4611 21153 21564 37822 37822 0.0185723645500957 LGAESRQDL 9 Unmodified _LGAESRQDL_ 0 0 0 ENST00000529490.5_1_19:17530670-17530856:+|nuORF ENST00000529490.5_1_19:17530670-17530856:+|nuORF ENST00000529490.5_1_19:17530670-17530856:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2904357910156 2 494.756538 987.498523 1.49 0.00073719 1.3945 0.00068991 2.8845 0.0014271 494.7571451765291 58.77 0.35926 52.696 52.527 52.886 -6.0745 24 19 2 0 0 0 0.17275 1 37578 37578 15.847 0 1 8663300 32007 14872 21154 21565 37823 37823 0.004273915411431517 LGAFIDQIPLR 11 Unmodified _LGAFIDQIPLR_ 0 0 0 REV__ENSG00000145495|ENST00000274140|MARCHF6 REV__ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8653564453125 2 621.86388 1241.71321 1.6238 0.0010098 1.4 0.00087062 3.0238 0.0018804 621.864704398211 81.434 0.32362 81.494 81.287 81.61 0.059929 22 11 2 0 0 0 0.44182 1 45001 45001 19.362 2.249 1 3947400 + 32008 20777 21155 21566 37824 37824 0.10201938356885876 LGAGHPVPS 9 Unmodified _LGAGHPVPS_ 0 0 0 nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.447509765625 1 834.446828 833.439552 0.15998 0.00013349 -0.071563 -5.9715E-05 0.088415 7.3778E-05 834.446593238667 62.553 0.29026 62.065 61.915 62.206 -0.48764 28 13 3 0 0 0 0.14602 1 34042 34042 28.487 5.3384 1 6809400 32009 8891 21156 21567 37825 37825 0.016169600374723814 LGAIISCFL 9 Unmodified _LGAIISCFL_ 0 0 0 REV__ENSG00000162618|ENST00000370742|ADGRL4 REV__ENSG00000162618|ENST00000370742|ADGRL4 MSMS AL20221201_MKP_PDAC_01 4 468.7643127441406 2 468.764789 935.515025 NaN NaN NaN NaN NaN NaN NaN 46.401 1 41.32 40.82 41.82 -5.0805 0 0 0 0.57317 1 28651 28651 13.508 0 1 + 32010 21665 21157 21568 37826 37826 0.04468801173527481 LGAILWPKRVR 11 Unmodified _LGAILWPKRVR_ 0 0 0 ENST00000490581.6_1_X:51805127-51807590:-|nuORF ENST00000490581.6_1_X:51805127-51807590:-|nuORF ENST00000490581.6_1_X:51805127-51807590:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.917724609375 2 654.916781 1307.81901 1.4417 0.00094416 -1.0605 -0.00069453 0.38116 0.00024963 654.9157536251317 105.74 0.64306 99.566 99.396 100.04 -6.1757 166 76 3 0 0 0 0.74157 1 70987 70987 0.35063 0.043601 1 9170400 32011 14262 21158 21569 37827 37827 0.177413189930121 LGAKKGHI 8 Unmodified _LGAKKGHI_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MSMS AL20221201_MKP_PDAC_01 4 412.2628173828125 2 412.261062 822.507572 NaN NaN NaN NaN NaN NaN NaN 36.936 1 32.652 32.152 33.152 -4.2835 0 0 0 0.88073 1 21620 21620 19.439 0 1 + 32012 22852 21159 21570 37828 37828 0.08921829688131311 LGALGLALP 9 Unmodified _LGALGLALP_ 0 0 0 REV__ENST00000266546.10_1_12:7310874-7311150:+|nuORF REV__ENST00000266546.10_1_12:7310874-7311150:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 824.525146484375 1 824.524016 823.516739 2.0505 0.0016906 -0.71119 -0.00058639 1.3393 0.0011043 824.5230536880197 81.861 0.39776 81.921 81.68 82.078 0.059929 26 15 2 0 0 0 0.085487 1 45201 45201 36.466 0 1 13561000 + 32013 25102 21160 21571 37829 37829 0.09792178253792372 LGALLQLH 8 Unmodified _LGALLQLH_ 0 0 0 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8858337402344 2 432.76872 863.522887 0.6742 0.00029177 0.46315 0.00020044 1.1374 0.00049221 432.7689391482233 68.457 0.22506 68.482 68.337 68.562 0.025154 17 10 2 0 0 0 8.7369 1 37534 37534 11.114 0 1 1690600 32014 1100 21161 21572 37830 37830 0.08566696485308967 LGANAIYCL 9 Unmodified _LGANAIYCL_ 0 0 0 nc|ENSG00000168701|Q9BTX3-2|TMEM208;ENSG00000168701|ENST00000304800|TMEM208 nc|ENSG00000168701|Q9BTX3-2|TMEM208 nc|ENSG00000168701|Q9BTX3-2|TMEM208 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.244140625 2 469.244221 936.473888 -0.20456 -9.5989E-05 -0.66772 -0.00031332 -0.87228 -0.00040931 469.2437409268283 26.512 0.31454 26.512 26.468 26.782 0 27 14 2 0 0 0 0.39863 1 13745 13745 12.532 0 1 1300400 32015 7791 21162 21573 37831 37831 0.0031104013405638398 LGAPDELLAF 10 Unmodified _LGAPDELLAF_ 0 0 0 nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7 nc|ENSG00000081059|P36402-9|TCF7 nc|ENSG00000081059|P36402-9|TCF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2830200195312 2 523.281857 1044.54916 0.44453 0.00023261 -0.88162 -0.00046133 -0.43709 -0.00022872 523.2812822672959 82.921 0.36884 82.423 82.244 82.613 -0.49751 38 15 3 0 0 0 0.14917 1 45358 45358 39.957 1.9833 1 3818500 32016 1316 21163 21574 37832 37832 0.028669208661540324 LGAPDELLAF 10 Unmodified _LGAPDELLAF_ 0 0 0 nc|ENSG00000081059|P36402-9|TCF7;nc|ENSG00000081059|P36402-13|TCF7;nc|ENSG00000081059|P36402-15|TCF7;nc|ENSG00000081059|P36402-7|TCF7;nc|ENSG00000081059|P36402|TCF7;ENSG00000081059|ENST00000342854|TCF7;nc|ENSG00000081059|P36402-11|TCF7;nc|ENSG00000081059|P36402-3|TCF7 nc|ENSG00000081059|P36402-9|TCF7 nc|ENSG00000081059|P36402-9|TCF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.28173828125 2 523.281857 1044.54916 1.3798 0.00072201 -1.0801 -0.00056517 0.29973 0.00015684 523.2813598052828 90.775 0.53842 84.599 84.355 84.894 -6.1757 60 31 2 0 0 0 0.14917 1 60023 60023 39.957 1.9833 1 24269000 32017 1316 21163 21574 37833 37833 0.028669208661540324 LGAQDLPAVPN 11 Unmodified _LGAQDLPAVPN_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2698974609375 2 547.795663 1093.57677 0.61356 0.00033611 -0.67375 -0.00036908 -0.060192 -3.2973E-05 547.7954142773074 52.306 0.30392 46.571 46.422 46.726 -5.7345 31 17 2 0 0 0 0.27394 1 32983 32983 21.537 3.3906 1 64533000 + 32018 22079 21164 21575 37834 37834 0.03372824126381602 LGAQEEDAF 9 Unmodified _LGAQEEDAF_ 0 0 0 nc|ENSG00000104883|Q96HA9-2|PEX11G;ENSG00000104883|ENST00000221480|PEX11G nc|ENSG00000104883|Q96HA9-2|PEX11G nc|ENSG00000104883|Q96HA9-2|PEX11G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2236633300781 2 490.221997 978.429441 -0.2577 -0.00012633 2.6851 0.0013163 2.4274 0.00119 490.22317613376356 48.864 0.32831 48.864 48.658 48.986 0 45 15 4 0 0 0 0.43463 1 26819 26819 10.824 2.2306 1 9121000 32019 2249 21165 21576 37835 37835 -0.06063692478426219 LGAQLGSTFY 10 Unmodified _LGAQLGSTFY_ 0 0 0 REV__nc|ENSG00000161847|Q8IY67|RAVER1 REV__nc|ENSG00000161847|Q8IY67|RAVER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.772216796875 2 528.771657 1055.52876 0.29558 0.00015629 0.33973 0.00017964 0.63531 0.00033593 528.7720084493817 96.36 0.26572 96.056 95.894 96.16 -0.30472 28 16 2 0 0 0 0.66569 1 52598 52598 6.7232 1.4925 1 502260 + 32020 21608 21166 21577 37836 37836 0.00321750206330762 LGARQLYK 8 Unmodified _LGARQLYK_ 0 0 0 REV__ENST00000422983.1_1_1:53038862-53039237:+|nuORF REV__ENST00000422983.1_1_1:53038862-53039237:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7831726074219 2 474.784902 947.55525 NaN NaN NaN NaN NaN NaN NaN 73.954 1 73.479 72.979 73.979 -0.47588 0 0 0 0.97444 1 40476 40476 2.8892 0 1 + 32021 26864 21167 21578 37837 37837 0.07937483888315455 LGASPAHPH 9 Unmodified _LGASPAHPH_ 0 0 0 REV__ENST00000354989.9_1_20:25206534-25206930:+|nuORF REV__ENST00000354989.9_1_20:25206534-25206930:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 443.2562255859375 2 443.730126 885.4457 1.2258 0.00054392 1.2655 0.00056155 2.4913 0.0011055 443.7307269774567 37.937 0.2902 33.568 33.381 33.671 -4.3689 25 16 2 0 0 0 0.18521 1 22231 22231 3.9444 0 1 7924900 + 32022 25798 21168 21579 37838 37838 -0.0016052173101570588 LGAVDLRPL 9 Unmodified _LGAVDLRPL_ 0 0 0 REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF REV__ENST00000369769.3_1_1:111216478-111216679:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2918701171875 2 477.292559 952.570566 0.2567 0.00012252 -0.05679 -2.7105E-05 0.19991 9.5418E-05 477.2923281364836 65.663 0.44368 59.487 59.184 59.628 -6.1757 33 25 2 0 0 0 0.08691 1 42537 42537 36.127 3.3413 1 15284000 + 32023 26041 21169 21580 37839 37839 0.09238350685495789 LGAVPRGRLL 10 Unmodified _LGAVPRGRLL_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.340087890625 2 526.340375 1050.6662 0.92042 0.00048445 -0.30648 -0.00016131 0.61394 0.00032314 526.3401536499285 81.717 0.69341 75.541 75.308 76.001 -6.1757 67 39 2 0 0 0 0.52888 1 53584 53584 14.838 0.93222 1 12540000 32024 2604 21170 21581 37840 37840 0.1428912359642709 LGAVPVYR 8 Unmodified _LGAVPVYR_ 0 0 0 ENST00000465695.1_1_10:75532330-75533574:+|nuORF;nc|ENSG00000196968|Q495W5-2|FUT11;ENSG00000196968|ENST00000372841|FUT11 ENST00000465695.1_1_10:75532330-75533574:+|nuORF ENST00000465695.1_1_10:75532330-75533574:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.5153198242188 1 874.514514 873.507237 0.99198 0.0008675 -0.61568 -0.00053842 0.3763 0.00032908 874.5140233906603 66.809 0.31426 66.827 66.693 67.007 0.018028 25 14 2 0 0 0 0.67481 1 36731 36731 19.439 1.304 1 6725300 32025 9892 21171 21582 37841 37841 0.06542409968267293 LGAWHART 8 Unmodified _LGAWHART_ 0 0 0 REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF REV__ENST00000601508.1_1_2:220362457-220362814:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2459411621094 2 456.245944 910.477334 1.5715 0.00071698 -0.97296 -0.00044391 0.59851 0.00027307 456.2452889745109 46.786 0.22169 46.752 46.656 46.877 -0.033417 19 10 2 0 0 0 0.57045 1 25199 25199 28.487 3.0875 1 2606500 + 32026 29256 21172 21583 37842 37842 0.018514710229283082 LGCCICHWRH 10 Unmodified _LGCCICHWRH_ 0 0 0 REV__ENST00000404372.1_1_6:151256374-151256410:+|nuORF REV__ENST00000404372.1_1_6:151256374-151256410:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2702026367188 2 614.270255 1226.52596 NaN NaN NaN NaN NaN NaN NaN 17.728 1 17.728 17.228 18.228 0 0 0 0 1.0061 1 8759 8759 0 0 1 + 32027 26640 21173 21584 37843 37843 -0.07824442995502068 LGCCTMTL 8 Unmodified _LGCCTMTL_ 0 0 0 ENST00000588526.5_1_19:13875372-13879175:+|nuORF;ENST00000591688.5_1_19:13875372-13879601:+|nuORF ENST00000588526.5_1_19:13875372-13879175:+|nuORF ENST00000588526.5_1_19:13875372-13879175:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1841735839844 2 421.18446 840.354367 0.63135 0.00026592 -0.46261 -0.00019484 0.16874 7.1071E-05 421.1842279003781 51.234 0.36839 51.234 51.085 51.454 0 30 16 3 0 0 0 0.78849 1 28272 28272 9.3474 0 1 4042900 32028 15648 21174 21585 37844 37844 -0.07219612806500209 LGCYCYMGVI 10 Unmodified _LGCYCYMGVI_ 0 0 0 ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.4983215332031 3 374.499125 1120.47554 NaN NaN NaN NaN NaN NaN NaN 90.509 1 90.014 89.514 90.514 -0.49457 0 0 0 0.96627 1 49473 49473 2.086 0.34373 1 32029 6002 21175 21586 37845 37845 -0.07987410163832465 LGDELQQF 8 Unmodified _LGDELQQF_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2360534667969 2 475.234907 948.455261 0.33983 0.0001615 0.16786 7.9772E-05 0.50769 0.00024127 475.236163031054 61.333 0.13479 61.333 61.254 61.389 0 7 5 2 0 0 0 0.80624 1 34206 34206 2.8892 0 1 279270 32030 8997 21176 21587 37846 37846 -0.021027982361374598 LGDGRFHLE 9 Unmodified _LGDGRFHLE_ 0 0 0 nc|ENSG00000108963|Q9BZG8-2|DPH1;ENSG00000108963|ENST00000263083|DPH1;nc|ENSG00000108963|Q9BZG8-1|DPH1;ENST00000572214.5_1_17:1940203-1943704:+|nuORF nc|ENSG00000108963|Q9BZG8-2|DPH1 nc|ENSG00000108963|Q9BZG8-2|DPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.26806640625 2 522.267073 1042.51959 0.92571 0.00048347 -1.1555 -0.0006035 -0.22983 -0.00012003 522.2667457529144 39.101 0.50455 34.65 34.459 34.964 -4.4509 52 31 3 0 0 0 0.21643 1 23052 23052 21.537 3.3906 1 14228000 32031 2623 21177 21588 37847 37847 3.4016406743830885E-05 LGDKSESVSHQ 11 Unmodified _LGDKSESVSHQ_ 0 0 0 AluSq2_dup25958|chr8:11842628-11842936:-|1.18158135393485|0.0949023208327711|3.64|179.0|3|1|sense AluSq2_dup25958|chr8:11842628-11842936:-|1.18158135393485|0.0949023208327711|3.64|179.0|3|1|sense AluSq2_dup25958|chr8:11842628-11842936:-|1.18158135393485|0.0949023208327711|3.64|179.0|3|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7838134765625 2 593.788566 1185.56258 -0.3905 -0.00023187 -4.2247 -0.0025086 -4.6152 -0.0027405 594.2870886121125 40.844 0.1518 40.844 40.72 40.872 0 38 18 3 0 0 0 0.44182 1 21962 21962 19.362 0.10495 1 19302000 32032 24 21178 21589 37848 37848 -0.022778730925665513 LGDLEKFE 8 Unmodified _LGDLEKFE_ 0 0 0 REV__ENSG00000179071|ENST00000316398|CCDC89 REV__ENSG00000179071|ENST00000316398|CCDC89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4814453125 1 950.482939 949.475663 -0.3302 -0.00031385 1.2561 0.0011939 0.92592 0.00088007 950.4839515906507 82.146 0.32896 82.146 81.985 82.314 0 25 15 2 0 0 0 0.80676 1 45542 45542 2.5775 0 1 638950 + 32033 23083 21179 21590 37849 37849 -0.0010962757633024012 LGDNHVHSSF 10 Unmodified _LGDNHVHSSF_ 0 0 0 nc|ENSG00000112175|P22003-2|BMP5;ENSG00000112175|ENST00000370830|BMP5 nc|ENSG00000112175|P22003-2|BMP5 nc|ENSG00000112175|P22003-2|BMP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3043212890625 2 556.759612 1111.50467 NaN NaN NaN NaN NaN NaN NaN 80.703 1 80.211 79.711 80.711 -0.49247 0 0 0 0.94014 1 44193 44193 6.2058 0.47393 1 32034 2867 21180 21591 37850 37850 -0.04662090227338922 LGDNLRGIGS 10 Unmodified _LGDNLRGIGS_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2716369628906 2 501.272355 1000.53016 0.062644 3.1402E-05 0.36415 0.00018254 0.42679 0.00021394 501.27235517173705 63.268 0.32652 62.782 62.622 62.948 -0.48617 22 14 2 0 0 0 0.42143 1 34497 34497 20.415 3.328 1 2107600 32035 1116 21181 21592 37851 37851 0.029913842951032166 LGDNLRGIGS 10 Unmodified _LGDNLRGIGS_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 501.272355 1000.53016 0.37562 0.00018829 0.93976 0.00047108 1.3154 0.00065936 501.7746899715113 62.788 0.12108 62.788 62.749 62.87 0 0.0031907 0.00041723 NaN 20.415 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 652950 32036 1116 21181 21592 0.029913842951032166 LGDNQWLMQEW 11 Unmodified _LGDNQWLMQEW_ 0 0 0 REV__ENST00000518071.5_3_8:102190478-102212227:-|nuORF REV__ENST00000518071.5_3_8:102190478-102212227:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8856201171875 3 473.883572 1418.62889 0.51029 0.00024182 1.1564 0.00054801 1.6667 0.00078983 474.21825558415605 50.794 0.25476 50.794 50.643 50.897 0 26 15 2 0 0 0 0.65108 1 27991 27991 4.4062 0 1 8787900 + 32037 28239 21182 21593 37852 37852 -0.06368380522167172 LGDPEKRTQYF 11 Unmodified _LGDPEKRTQYF_ 0 0 0 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 ENSG00000182255|ENST00000328224|KCNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3450927734375 2 677.343509 1352.67246 0.58822 0.00039842 -0.49552 -0.00033563 0.0927 6.279E-05 677.3432980704624 46.751 0.19477 46.415 46.309 46.503 -0.33664 18 9 3 0 0 0 0.61059 1 25056 25056 10.8 2.0541 1 2873200 32038 9037 21183 21594 37853 37853 0.010235522466018665 LGDRKDQGGY 10 Unmodified _LGDRKDQGGY_ 0 0 0 ENSG00000186868|ENST00000262410|MAPT;ENST00000570299.5_1_17:44039703-44096001:+|nuORF;nc|ENSG00000186868|P10636-2|MAPT;nc|ENSG00000186868|P10636-4|MAPT;nc|ENSG00000186868|P10636-6|MAPT;nc|ENSG00000186868|P10636-5|MAPT;nc|ENSG00000186868|P10636-7|MAPT;nc|ENSG00000186868|P10636-8|MAPT;nc|ENSG00000186868|P10636|MAPT;nc|ENSG00000186868|P10636-9|MAPT ENSG00000186868|ENST00000262410|MAPT ENSG00000186868|ENST00000262410|MAPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7715454101562 2 554.772719 1107.53089 0.38802 0.00021527 -2.0753 -0.0011513 -1.6873 -0.00093608 554.7714803496858 40.113 0.41727 35.584 35.487 35.904 -4.5294 62 35 2 0 0 0 0.56348 1 23961 23961 13.042 2.2185 1 43096000 32039 9515 21184 21595 37854 37854 -0.01857821055864406 LGDSFILLVQG 11 Unmodified _LGDSFILLVQG_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3299560546875 2 581.329339 1160.64412 0.49099 0.00028543 0.18642 0.00010837 0.67741 0.0003938 581.329613496949 67.52 0.40814 67.037 66.78 67.189 -0.48218 46 17 4 0 0 0 0.59689 1 36960 36960 11.495 3.3392 1 11922000 + 32040 22671 21185 21596 37855 37855 0.07022854337333229 LGDSGDHL 8 Unmodified _LGDSGDHL_ 0 0 0 REV__ENSG00000153714|ENST00000319264|LURAP1L REV__ENSG00000153714|ENST00000319264|LURAP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1889343261719 2 407.1905 812.366446 NaN NaN NaN NaN NaN NaN NaN 36.933 1 36.933 36.433 37.433 0 0 0 0 0.9706 1 19617 19617 6.3541 3.4649 1 + 32041 21180 21186 21597 37856 37856 -0.04724213475799388 LGDTGKLVAL 10 Unmodified _LGDTGKLVAL_ 0 0 0 ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7979736328125 2 493.797675 985.580796 0.47133 0.00023274 -0.48502 -0.0002395 -0.0137 -6.7648E-06 493.79738979506556 58.159 0.28616 57.669 57.533 57.819 -0.48974 20 13 2 0 0 0 0.067957 1 31661 31661 53.833 2.203 1 2754900 32042 7496 21187 21598 37857 37857 0.08742913620085346 LGDTGKLVAL 10 Unmodified _LGDTGKLVAL_ 0 0 0 ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.797675 985.580796 0.38853 0.00019185 -0.0229 -1.1308E-05 0.36563 0.00018055 493.79766695528826 57.784 0.20104 57.784 57.716 57.917 0 0.057628 0.00021258 NaN 53.833 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1476300 32043 7496 21187 21598 0.08742913620085346 LGDYFEKHIEY 11 Unmodified _LGDYFEKHIEY_ 0 0 0 REV__nc|ENSG00000186716|P11274-2|BCR REV__nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.3348999023438 2 707.337892 1412.66123 -0.26576 -0.00018798 -2.8146 -0.0019909 -3.0803 -0.0021788 707.335730799573 41.468 0.19482 41.165 41.067 41.262 -0.30304 21 8 3 0 0 0 0.59689 1 21980 21980 11.495 1.3441 1 5335600 + 32044 23592 21188 21599 37858 37858 -0.028592698475222278 LGDYFEKHIEY 11 Unmodified _LGDYFEKHIEY_ 0 0 0 REV__nc|ENSG00000186716|P11274-2|BCR REV__nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.3364868164062 2 707.337892 1412.66123 0.096638 6.8355E-05 -2.1208 -0.0015001 -2.0242 -0.0014318 707.3365745723152 43.365 0.15548 43.055 42.969 43.124 -0.31039 10 7 2 0 0 0 0.50515 1 23084 23084 16.149 5.9985 1 11106000 + 32045 23592 21188 21599 37859 37859 -0.028592698475222278 LGEHLPVGGF 10 Unmodified _LGEHLPVGGF_ 0 0 0 nc|ENSG00000137075|Q9H0F5-5|RNF38;nc|ENSG00000137075|Q9H0F5-3|RNF38;nc|ENSG00000137075|Q9H0F5-4|RNF38;nc|ENSG00000137075|Q9H0F5-2|RNF38;ENSG00000137075|ENST00000259605|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 nc|ENSG00000137075|Q9H0F5-5|RNF38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.275390625 2 513.274367 1024.53418 0.06934 3.5591E-05 0.57443 0.00029484 0.64377 0.00033043 513.2745969886986 43.096 0.34256 42.786 42.587 42.93 -0.31039 37 15 3 0 0 0 0.52888 1 22970 22970 14.838 0.93222 1 18252000 32046 4897 21189 21600 37860 37860 0.022894737888236705 LGEIEELRLY 10 Unmodified _LGEIEELRLY_ 0 0 0 ENSG00000153914|ENST00000334121|SREK1;ENST00000523851.1_1_5:65440204-65449482:+|nuORF;ENST00000520058.1_1_5:65440204-65449453:+|nuORF ENSG00000153914|ENST00000334121|SREK1 ENSG00000153914|ENST00000334121|SREK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2274169921875 3 412.227444 1233.6605 -1.2276 -0.00050605 -0.038221 -1.5756E-05 -1.2658 -0.00052181 412.22740742896065 32.616 0.32976 32.616 32.481 32.811 0 30 17 2 0 0 0 0.70734 1 17136 17136 2.086 0 1 4624900 32047 6280 21190 21601 37861 37861 0.05301935503416644 LGELDQKEH 9 Unmodified _LGELDQKEH_ 0 0 0 REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2930908203125 2 534.769645 1067.52474 -0.28505 -0.00015243 -0.062162 -3.3242E-05 -0.34721 -0.00018568 534.7696226807536 19.044 0.23345 19.044 18.896 19.13 0 33 19 2 0 0 0 0.20528 1 9546 9546 8.5933 0 1 1243300 + 32048 19924 21191 21602 37862 37862 -0.006323392873810008 LGELDQKEH 9 Unmodified _LGELDQKEH_ 0 0 0 REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.769645 1067.52474 -0.60099 -0.00032139 0.96143 0.00051415 0.36045 0.00019276 534.7701890248778 18.998 0.14828 19.022 18.902 19.05 0.023106 -0.011003 0.00069585 NaN 8.5933 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 666820 + 32049 19924 21191 21602 -0.006323392873810008 LGELGLVDL 9 Unmodified _LGELGLVDL_ 0 0 0 ENST00000379619.5_1_2:28635552-28635666:+|nuORF ENST00000379619.5_1_2:28635552-28635666:+|nuORF ENST00000379619.5_1_2:28635552-28635666:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.5366821289062 1 928.534975 927.527698 0.35264 0.00032744 0.38213 0.00035482 0.73477 0.00068226 928.5352939185356 88.24 0.3251 88.24 88.073 88.398 0 29 16 2 0 0 0 0.095405 2 48898 48810;48898 34.102 5.6156 1 1566100 32050 12572 21192 21603 37863;37864 37864 0.061035358374169846 LGELGLVDL 9 Unmodified _LGELGLVDL_ 0 0 0 ENST00000379619.5_1_2:28635552-28635666:+|nuORF ENST00000379619.5_1_2:28635552-28635666:+|nuORF ENST00000379619.5_1_2:28635552-28635666:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7714538574219 2 464.771126 927.527698 0.60957 0.00028331 0.61461 0.00028566 1.2242 0.00056897 464.77141728258033 99.584 0.13269 93.409 93.341 93.474 -6.1757 14 8 2 0 0 0 0.026094 1 66361 66361 57.471 6.6163 1 34787000 32051 12572 21192 21603 37865 37865 0.061035358374169846 LGELWWEY 8 Unmodified _LGELWWEY_ 0 0 0 ENST00000395011.5_1_10:72060408-72060609:-|nuORF ENST00000395011.5_1_10:72060408-72060609:-|nuORF ENST00000395011.5_1_10:72060408-72060609:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7808837890625 2 548.260925 1094.5073 2.1487 0.0011781 -0.24769 -0.0001358 1.901 0.0010423 548.2606267764608 95.342 0.37357 95.346 95.158 95.532 0.004158 25 13 3 0 0 0 8.7369 1 52914 52914 5.2307 1.2863 1 1725000 32052 12758 21193 21604 37866 37866 -0.036176348223762034 LGEPAEALA 9 Unmodified _LGEPAEALA_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4559936523438 1 870.456724 869.449448 0.42713 0.0003718 -0.2676 -0.00023293 0.15953 0.00013886 870.4564813865155 36.239 0.18019 36.239 36.131 36.311 0 15 8 2 0 0 0 0.026094 1 19185 19185 57.471 2.6978 1 5097400 + 32053 18501 21194 21605 37867 37867 0.00950103252171175 LGEPAEALA 9 Unmodified _LGEPAEALA_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 870.456724 869.449448 0.42713 0.0003718 -0.2676 -0.00023293 0.15953 0.00013886 870.4564813865155 36.239 0.18019 36.239 36.131 36.311 0 0 0 NaN 57.471 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5097400 + 32054 18501 21194 21605 0.00950103252171175 LGEQDSFTQFR 11 Unmodified _LGEQDSFTQFR_ 0 0 0 REV__ENSG00000112877|ENST00000264935|CEP72 REV__ENSG00000112877|ENST00000264935|CEP72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.3170166015625 2 664.317491 1326.62043 0.43879 0.0002915 1.2145 0.00080681 1.6533 0.0010983 664.3184263978919 57.617 0.42995 57.128 56.88 57.31 -0.48974 51 20 3 0 0 0 0.53952 1 31414 31414 14.405 2.1647 1 6878300 + 32055 18841 21195 21606 37868 37868 -0.02981611167160736 LGEQDSFTQFR 11 Unmodified _LGEQDSFTQFR_ 0 0 0 REV__ENSG00000112877|ENST00000264935|CEP72 REV__ENSG00000112877|ENST00000264935|CEP72 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 664.317491 1326.62043 0.072616 4.824E-05 3.7211 0.002472 3.7937 0.0025202 664.3198556978085 56.875 0.1543 56.875 56.746 56.9 0 -0.12637 0.0023498 NaN 14.405 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 3321000 + 32056 18841 21195 21606 -0.02981611167160736 LGEQFQASDL 10 Unmodified _LGEQFQASDL_ 0 0 0 REV__ENST00000557504.1_1_14:77718073-77723066:+|nuORF REV__ENST00000557504.1_1_14:77718073-77723066:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.848876953125 3 369.848744 1106.5244 NaN NaN NaN NaN NaN NaN NaN 14.584 1 12.081 11.581 12.581 -2.5029 0 0 0 0.97044 1 7418 7418 3.8763 2.1341 1 + 32057 22020 21196 21607 37869 37869 -0.024597590072289677 LGEQVIVP 8 Unmodified _LGEQVIVP_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7526245117188 2 427.752736 853.490919 NaN NaN NaN NaN NaN NaN NaN 68.687 1 68.687 68.187 69.187 0 0 0 0 0.97444 1 38282 38282 2.5775 0.27475 1 32058 4425 21197 21608 37870 37870 0.05831284011514981 LGERRHDEER 10 Unmodified _LGERRHDEER_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8858337402344 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 68.324 1 68.35 67.85 68.85 0.025146 0 0 0 0.99008 1 37534 37534 1.7423 0.28716 1 + 32059 17984 21198 21609 37871 37871 -0.002931549842514869 LGERRHDEER 10 Unmodified _LGERRHDEER_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MSMS AL20221201_MKP_PDAC_01 4 432.8860778808594 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 18.3 1 15.678 15.178 16.178 -2.6215 0 0 0 0.98692 1 9631 9631 2.086 0.17963 1 + 32060 17984 21198 21609 37872 37872 -0.002931549842514869 LGERTPVAV 9 Unmodified _LGERTPVAV_ 0 0 0 REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2734069824219 2 471.274367 940.53418 -0.3674 -0.00017315 0.095833 4.5164E-05 -0.27157 -0.00012798 471.2742922984862 34.306 0.22816 34.306 34.156 34.384 0 19 11 2 0 0 0 0.10734 1 18032 18032 32.305 1.6689 1 8018800 + 32061 24963 21199 21610 37873 37873 0.0615347378881097 LGERTPVAV 9 Unmodified _LGERTPVAV_ 0 0 0 REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF REV__ENST00000260447.5_1_15:41056290-41058050:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.274367 940.53418 -0.3674 -0.00017315 0.095833 4.5164E-05 -0.27157 -0.00012798 471.2742922984862 34.306 0.22816 34.306 34.156 34.384 0 -0.01423 -0.0002119 NaN 32.305 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 8018800 + 32062 24963 21199 21610 0.0615347378881097 LGESKTFTF 9 Unmodified _LGESKTFTF_ 0 0 0 ENST00000595804.5_1_19:39327364-39328165:-|nuORF ENST00000595804.5_1_19:39327364-39328165:-|nuORF ENST00000595804.5_1_19:39327364-39328165:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2669677734375 2 515.266207 1028.51786 NaN NaN NaN NaN NaN NaN NaN 75.533 1 75.533 75.033 76.033 0 0 0 0 0.84564 1 42014 42014 2.0598 0 1 32063 15761 21200 21611 37874 37874 0.004743478320506256 LGETHTLWAL 10 Unmodified _LGETHTLWAL_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8724975585938 3 380.873113 1139.59751 NaN NaN NaN NaN NaN NaN NaN 15.627 1 15.613 15.113 16.113 -0.014067 0 0 0 0.99091 1 7679 7679 0.69767 0 1 + 32064 29707;21097 21201 21612 37875 37875 0.0332941450603812 LGETLATVA 9 Unmodified _LGETLATVA_ 0 0 0 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7482604980469 2 437.74765 873.480748 1.5677 0.00068627 0.31049 0.00013592 1.8782 0.00082219 437.74753844365483 64.299 0.36049 58.124 57.955 58.315 -6.1757 28 18 2 0 0 0 0.03327 1 41667 41667 53.576 0 1 13851000 + 32065 24672 21202 21613 37876 37876 0.03894676286279264 LGETLPISV 9 Unmodified _LGETLPISV_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7706604003906 2 464.771126 927.527698 0.58413 0.00027149 -0.0904 -4.2015E-05 0.49373 0.00022947 464.7711686468095 88.249 0.21836 88.249 88.109 88.327 0 16 9 2 0 0 0 0.54444 1 48842 48842 4.756 0 1 397080 + 32066 18469 21203 21614 37877 37877 0.06103535837428353 LGETLPISV 9 Unmodified _LGETLPISV_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 464.771126 927.527698 0.58413 0.00027149 -0.0904 -4.2015E-05 0.49373 0.00022947 464.7711686468095 88.249 0.21836 88.249 88.109 88.327 0 0 0 NaN 4.756 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 397080 + 32067 18469 21203 21614 0.06103535837428353 LGFDAVLL 8 Unmodified _LGFDAVLL_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.4920043945312 1 847.492381 846.485105 1.5768 0.0013364 -2.1291 -0.0018044 -0.55222 -0.000468 847.4906413349197 100.88 0.077965 94.707 94.67 94.748 -6.1757 6 4 2 0 0 0 0.21786 1 67587 67587 67.035 3.4725 1 13786000 + 32068 24651 21204 21615 37878 37878 0.055721854998637355 LGFEEADWS 9 Unmodified _LGFEEADWS_ 0 0 0 REV__ENSG00000077616|ENST00000534061|NAALAD2;REV__ENST00000527493.5_1_11:89892410-89896902:+|nuORF REV__ENSG00000077616|ENST00000534061|NAALAD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7374877929688 2 527.229822 1052.44509 0.3088 0.00016281 3.4089 0.0017972 3.7177 0.0019601 527.2320924897642 49.013 0.24149 49.013 48.91 49.152 0 21 11 2 0 0 0 0.18118 1 26981 26981 12.532 0 1 6740200 + 32069 17616;28391 21205 21616 37879 37879 -0.07903405961383214 LGFIRHQF 8 Unmodified _LGFIRHQF_ 0 0 0 REV__ENST00000476534.1_1_2:97269891-97271381:-|nuORF REV__ENST00000476534.1_1_2:97269891-97271381:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2604370117188 2 509.285069 1016.55558 0.90867 0.00046277 -0.976 -0.00049706 -0.067327 -3.4289E-05 509.2845445969476 51.322 0.24611 51.322 51.208 51.454 0 18 10 2 0 0 0 8.7369 1 28360 28360 14.582 6.6715 1 1004900 + 32070 27596 21206 21617 37880 37880 0.04796903608178127 LGFLHMAIF 9 Unmodified _LGFLHMAIF_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1929626464844 3 350.193129 1047.55756 -0.57826 -0.0002025 -0.51414 -0.00018005 -1.0924 -0.00038255 350.19315305969025 16.409 0.11597 16.409 16.381 16.497 0 40 26 2 0 0 0 0.60285 1 7996 7996 1.1933 0.735 1 780970 + 32071 24352 21207 21618 37881 37881 0.035681963017623275 LGFPYEPLDVF 11 Unmodified _LGFPYEPLDVF_ 0 0 0 REV__nc|ENSG00000132840|Q9H2M3-2|BHMT2 REV__nc|ENSG00000132840|Q9H2M3-2|BHMT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.827880859375 2 648.829172 1295.64379 NaN NaN NaN NaN NaN NaN NaN 83.945 1 83.945 83.445 84.445 0 0 0 0 0.93893 1 46547 46547 3.2813 1.4371 1 + 32072 19884 21208 21619 37882 37882 0.007794346174478051 LGFRFCIRGF 10 Unmodified _LGFRFCIRGF_ 0 0 0 ENST00000469416.1_1_1:40922809-40928135:+|nuORF ENST00000469416.1_1_1:40922809-40928135:+|nuORF ENST00000469416.1_1_1:40922809-40928135:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1540832519531 3 405.886699 1214.63827 -1.1101 -0.00045057 1.5638 0.00063472 0.45368 0.00018414 406.2216872295048 32.732 0.13183 32.732 32.658 32.79 0 9 6 2 0 0 0 0.23862 1 17147 17147 1.9064 0 1 1218900 32073 13835 21209 21620 37883 37883 0.039534773446575855 LGFVISNPDL 10 Unmodified _LGFVISNPDL_ 0 0 0 ENST00000502981.2_1_4:53382-60051:+|nuORF;ENSG00000272602|ENST00000610261|ZNF595 ENST00000502981.2_1_4:53382-60051:+|nuORF ENST00000502981.2_1_4:53382-60051:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7991943359375 2 537.795132 1073.57571 0.16232 8.7296E-05 0.67212 0.00036146 0.83445 0.00044876 537.7949633857265 54.085 0.51363 53.619 53.327 53.841 -0.46664 61 25 4 0 0 0 0.40136 1 29381 29381 21.537 0 1 13813000 32074 10889 21210 21621 37884 37884 0.04186609757448423 LGGAAPHL 8 Unmodified _LGGAAPHL_ 0 0 0 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2122802734375 2 368.211038 734.407523 NaN NaN NaN NaN NaN NaN NaN 26.284 1 26.311 25.811 26.811 0.026951 0 0 0 0.9706 1 13630 13630 6.3541 0 1 + 32075 21937 21211 21622 37885 37885 0.02969592354327233 LGGAWPGPVL 10 Unmodified _LGGAWPGPVL_ 0 0 0 nc|ENSG00000062524|P29376-5|LTK nc|ENSG00000062524|P29376-5|LTK nc|ENSG00000062524|P29376-5|LTK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 483.2730102539062 2 483.774003 965.533452 1.0725 0.00051883 -0.90516 -0.00043789 0.1673 8.0934E-05 483.77390294695556 60.463 0.22914 54.315 54.182 54.412 -6.1478 17 11 2 0 0 0 0.13903 1 38872 38872 24.674 11.166 1 11352000 32076 16038 21212 21623 37886 37886 0.04930679139749827 LGGDEGRPSV 10 Unmodified _LGGDEGRPSV_ 0 0 0 ENST00000322177.5_1_15:75249324-75249669:-|nuORF ENST00000322177.5_1_15:75249324-75249669:-|nuORF ENST00000322177.5_1_15:75249324-75249669:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2247924804688 2 493.748713 985.482873 0.7653 0.00037787 1.7741 0.00087597 2.5394 0.0012538 493.75014301977905 67.705 0.40616 67.223 66.984 67.391 -0.48219 28 17 2 0 0 0 0.23821 1 37048 37048 4.3292 0 1 690010 32077 11784 21213 21624 37887 37887 -0.010448949758938397 LGGDGVNIPM 10 Unmodified _LGGDGVNIPM_ 0 0 0 REV__ENSG00000242689|ENST00000361987|CNTF REV__ENSG00000242689|ENST00000361987|CNTF MSMS AL20221201_MKP_PDAC_01 4 486.7435607910156 2 486.744585 971.474617 NaN NaN NaN NaN NaN NaN NaN 53.011 1 47.207 46.707 47.707 -5.8042 0 0 0 0.19054 1 33469 33469 43.858 5.8843 1 + 32078 24464 21214 21625 37888 37888 -0.01226165216883146 LGGFILLLAAL 11 Unmodified _LGGFILLLAAL_ 0 0 0 ENSG00000165449|ENST00000395348|SLC16A9 ENSG00000165449|ENST00000395348|SLC16A9 ENSG00000165449|ENST00000395348|SLC16A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8587036132812 2 550.857535 1099.70052 1.3711 0.0007553 -0.38874 -0.00021414 0.98239 0.00054116 550.8573541344629 98.121 0.13924 91.946 91.875 92.014 -6.1757 13 8 2 0 0 0 0.5111 1 65063 65063 15.847 0 1 29584000 32079 7339 21215 21626 37889 37889 0.15465526964658238 LGGGDRNMKI 10 Unmodified _LGGGDRNMKI_ 0 0 0 REV__ENST00000254480.9_1_3:47779541-47787434:-|nuORF REV__ENST00000254480.9_1_3:47779541-47787434:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7860107421875 2 530.782033 1059.54951 1.0333 0.00054846 2.4704 0.0013113 3.5037 0.0018597 530.7849091961357 50.945 0.1956 45.296 45.17 45.366 -5.649 19 11 2 0 0 0 0.14917 1 31986 31986 39.957 7.6518 1 24229000 + 32080 24904 21216 21627 37890 37890 0.022120173143548527 LGGGFAMA 8 Unmodified _LGGGFAMA_ 0 0 0 nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3 nc|ENSG00000158296|Q8WWT9-3|SLC13A3 nc|ENSG00000158296|Q8WWT9-3|SLC13A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1771850585938 2 362.178349 722.342146 NaN NaN NaN NaN NaN NaN NaN 19.107 1 19.13 18.63 19.63 0.023106 0 0 0 0.97444 1 9619 9619 2.8892 0 1 32081 6578 21217 21628 37891 37891 -0.03013145163038189 LGGGGSQLRE 10 Unmodified _LGGGGSQLRE_ 0 0 0 ENST00000485199.5_1_3:179754739-179754778:-|nuORF ENST00000485199.5_1_3:179754739-179754778:-|nuORF ENST00000485199.5_1_3:179754739-179754778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.256591796875 2 487.256705 972.498858 -0.44273 -0.00021572 -0.044655 -2.1758E-05 -0.48738 -0.00023748 487.2566797406737 16.493 0.77004 16.493 16.127 16.897 0 564 202 4 0 0 0 0.0575 4 7947 7851;7947;8148;8249 56.177 5.1569 1 36998000 32082 14165 21218 21629 37892;37893;37894;37895 37893 0.011508112609931231 LGGGGSQLRE 10 Unmodified _LGGGGSQLRE_ 0 0 0 ENST00000485199.5_1_3:179754739-179754778:-|nuORF ENST00000485199.5_1_3:179754739-179754778:-|nuORF ENST00000485199.5_1_3:179754739-179754778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2563171386719 2 487.256705 972.498858 -0.41758 -0.00020347 0.67241 0.00032764 0.25483 0.00012417 487.25701977666847 16.864 0.38242 16.865 16.689 17.071 0.0010548 255 115 3 0 0 0 0.095098 1 8357 8357 47.749 3.8904 1 2453700 32083 14165 21218 21629 37896 37896 0.011508112609931231 LGGGPPSCSCL 11 Unmodified _LGGGPPSCSCL_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7233581542969 2 495.722795 989.431037 0.62511 0.00030988 0.44138 0.0002188 1.0665 0.00052868 495.72326527283116 36.717 0.24735 36.717 36.61 36.857 0 29 11 3 0 0 0 0.53099 1 19524 19524 14.838 3.198 1 3196800 + 32084 21439 21219 21630 37897 37897 -0.06410097985667562 LGGGTSWTAYS 11 Unmodified _LGGGTSWTAYS_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2583618164062 2 550.256371 1098.49819 0.42308 0.0002328 0.62692 0.00034496 1.05 0.00057777 550.2567049395134 49.076 0.2422 48.704 48.578 48.82 -0.37172 20 11 2 0 0 0 0.37677 1 26353 26353 22.736 0 1 5628900 32085 4078 21220 21631 37898 37898 -0.0471202817871017 LGGGVIGSF 9 Unmodified _LGGGVIGSF_ 0 0 0 REV__ENSG00000169908|ENST00000305366|TM4SF1 REV__ENSG00000169908|ENST00000305366|TM4SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.440185546875 1 806.44068 805.433404 -0.36283 -0.0002926 -0.17636 -0.00014222 -0.53919 -0.00043482 806.4405472323976 40.615 0.24872 40.615 40.491 40.739 0 23 13 2 0 0 0 0.10925 1 21806 21806 32.117 3.9437 1 3417600 + 32086 22436 21221 21632 37899 37899 0.022904418059511045 LGGHFGVY 8 Unmodified _LGGHFGVY_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.216552734375 2 425.216321 848.418088 NaN NaN NaN NaN NaN NaN NaN 88.765 1 88.261 87.761 88.761 -0.50423 0 0 0 0.97444 1 48543 48543 0.79363 0.10326 1 + 32087 22751 21222 21633 37900 37900 -0.012184249912365885 LGGIKVKL 8 Unmodified _LGGIKVKL_ 0 0 0 nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2893676757812 2 414.289288 826.564024 0.14799 6.1309E-05 0.21375 8.8555E-05 0.36174 0.00014986 414.28936030542997 61.136 0.77314 61.093 60.927 61.7 -0.04351 80 38 3 0 0 0 0.11943 2 33429 33325;33429 93.883 7.7621 1 22949000 32088 9460 21223 21634 37901;37902 37902 0.1438045752480548 LGGIKVKL 8 Unmodified _LGGIKVKL_ 0 0 0 nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2898254394531 2 414.289288 826.564024 1.5049 0.00062348 -0.2601 -0.00010776 1.2448 0.00051573 414.28911419029856 88.114 0.88045 81.938 81.512 82.392 -6.1757 125 48 3 0 0 0 0.11943 4 58059 57939;58059;58177;58302 93.883 7.7621 1 102300000 32089 9460 21223 21634 37903;37904;37905;37906 37904 0.1438045752480548 LGGKEERR 8 Unmodified _LGGKEERR_ 0 0 0 ENST00000537303.5_1_19:15479103-15482797:-|nuORF ENST00000537303.5_1_19:15479103-15482797:-|nuORF ENST00000537303.5_1_19:15479103-15482797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7673645019531 2 472.76724 943.519927 0.58557 0.00027684 -0.16633 -7.8636E-05 0.41924 0.0001982 472.7670800260848 84.839 0.3955 84.339 84.135 84.531 -0.50012 33 16 3 0 0 0 0.80975 1 46373 46373 0.79363 0 1 1732000 32090 14992 21224 21635 37907 37907 0.045908213605116543 LGGNIEQLV 9 Unmodified _LGGNIEQLV_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000436471.2_1_17:20385129-20386047:-|nuORF;ENST00000423641.1_1_10:86150999-86151317:+|nuORF;ENST00000426249.1_1_17:18365525-18365891:+|nuORF nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7669067382812 2 471.766374 941.518196 0.24767 0.00011684 -0.13235 -6.2438E-05 0.11532 5.4404E-05 471.76603786670063 72.114 0.25378 72.114 71.966 72.219 0 16 11 2 0 0 0 0.37804 1 40137 40137 13.508 4.9146 1 639860 32091 1364 21225 21636 37908 37908 0.04509767551917321 LGGNYLLNI 9 Unmodified _LGGNYLLNI_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.2428588867188 2 488.776742 975.538931 1.0858 0.0005307 4.405 0.0021531 5.4908 0.0026838 488.77745011061097 100.45 0.088646 94.271 94.241 94.33 -6.1757 5 4 2 0 0 0 0.16229 1 67156 67156 18.135 0 1 3890700 32092 8817 21226 21637 37909 37909 0.05018357931567152 LGGQIAEKA 9 Unmodified _LGGQIAEKA_ 0 0 0 REV__ENSG00000167676|ENST00000301286|PLIN4 REV__ENSG00000167676|ENST00000301286|PLIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 887.4990234375 1 886.499258 885.491981 0.22391 0.0001985 -0.51322 -0.00045497 -0.2893 -0.00025647 886.4993023653151 50.579 0.22662 50.166 50.032 50.258 -0.41351 18 10 2 0 0 0 0.39863 1 27204 27204 12.532 0 1 1994000 + 32093 22240 21227 21638 37910 37910 0.044654983804207404 LGGQKRAF 8 Unmodified _LGGQKRAF_ 0 0 0 ENST00000577043.1_1_16:2867692-2871170:+|nuORF ENST00000577043.1_1_16:2867692-2871170:+|nuORF ENST00000577043.1_1_16:2867692-2871170:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7569580078125 2 438.756144 875.497735 1.0193 0.00044723 0.49483 0.00021711 1.5141 0.00066434 438.7561669384446 39.279 0.41195 34.828 34.616 35.028 -4.4509 40 25 2 0 0 0 0.65867 2 23238 23238;23366 20.871 6.2895 1 28722000 32094 15526 21228 21639 37911;37912 37911 0.05500641682749574 LGGQKRAF 8 Unmodified _LGGQKRAF_ 0 0 0 ENST00000577043.1_1_16:2867692-2871170:+|nuORF ENST00000577043.1_1_16:2867692-2871170:+|nuORF ENST00000577043.1_1_16:2867692-2871170:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 438.756144 875.497735 -0.3004 -0.0001318 0.21453 9.4126E-05 -0.085872 -3.7677E-05 438.75621078431055 35.106 0.15596 35.106 35.034 35.19 0 0.13195 -0.00022235 NaN 20.871 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1095800 32095 15526 21228 21639 0.05500641682749574 LGGQRPGAL 9 Unmodified _LGGQRPGAL_ 0 0 0 REV__ENST00000481771.5_1_1:155181647-155183486:+|nuORF REV__ENST00000481771.5_1_1:155181647-155183486:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.8813171386719 2 434.753601 867.49265 1.001 0.00043517 -1.4597 -0.0006346 -0.45872 -0.00019943 434.7530700916182 38.22 0.29263 33.851 33.671 33.964 -4.3689 26 17 2 0 0 0 0.13712 1 22509 22509 16.942 0 1 11694000 + 32096 27702 21229 21640 37913 37913 0.053603378201387386 LGGREGQVSWL 11 Unmodified _LGGREGQVSWL_ 0 0 0 REV__ENST00000540816.1_7:1580595-1581193:+|nuORF REV__ENST00000540816.1_7:1580595-1581193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5499877929688 3 401.21565 1200.62512 -0.23141 -9.2845E-05 0.65314 0.00026205 0.42173 0.0001692 401.5504064096796 33.976 0.19698 33.784 33.668 33.865 -0.19131 15 7 3 0 0 0 0.69316 1 17754 17754 4.1166 2.3744 1 1073500 + 32097 25734 21230 21641 37914 37914 0.03283317766295113 LGGREGRRPG 10 Unmodified _LGGREGRRPG_ 0 0 0 REV__ENST00000340096.10_2_X:13753108-13753386:+|nuORF REV__ENST00000340096.10_2_X:13753108-13753386:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8896484375 3 352.200334 1053.57917 0.13408 4.7225E-05 -1.923 -0.00067728 -1.7889 -0.00063006 352.1996367247724 39.209 0.19699 39.22 39.084 39.281 0.011456 12 8 2 0 0 0 0.23986 1 20898 20898 0.13989 0 1 675140 + 32098 25688 21231 21642 37915 37915 0.05452717374714666 LGGRHAGL 8 Unmodified _LGGRHAGL_ 0 0 0 ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3;nc|ENSG00000071564|P15923-3|TCF3 ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MSMS AL20221201_MKP_PDAC_01 4 390.7286376953125 2 390.727387 779.44022 NaN NaN NaN NaN NaN NaN NaN 36.374 1 32.181 31.681 32.681 -4.1928 0 0 0 0.95973 1 21234 21234 8.5933 0 1 32099 1059 21232 21643 37916 37916 0.041677994771816884 LGGSSYGY 8 Unmodified _LGGSSYGY_ 0 0 0 ENST00000587804.1_1_19:46136252-46137743:-|nuORF ENST00000587804.1_1_19:46136252-46137743:-|nuORF ENST00000587804.1_1_19:46136252-46137743:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.1797180175781 2 402.182143 802.349734 NaN NaN NaN NaN NaN NaN NaN 0.32185 1 -2.1601 -2.6601 -1.6601 -2.482 0 0 0 0.97444 1 171 171 0.79363 0 1 32100 15639 21233 21644 37917 37917 -0.05934714361762872 LGGVPHFP 8 Unmodified _LGGVPHFP_ 0 0 0 REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.4476318359375 1 823.4461 822.438824 1.5539 0.0012796 -0.47311 -0.00038958 1.0808 0.00089 823.4460109328044 97.285 0.19335 91.109 91.01 91.203 -6.1757 14 10 2 0 0 0 0.70131 1 64462 64462 17.087 17.087 1 10095000 + 32101 29202 21234 21645 37918 37918 0.02050165388413916 LGGWQLQAH 9 Unmodified _LGGWQLQAH_ 0 0 0 ENST00000298838.10_3_11:47203991-47204593:-|nuORF;ENST00000531226.5_3_11:47203991-47204593:-|nuORF ENST00000298838.10_3_11:47203991-47204593:-|nuORF ENST00000298838.10_3_11:47203991-47204593:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2643127441406 2 505.264333 1008.51411 0.40334 0.00020379 -0.86625 -0.00043769 -0.46291 -0.00023389 505.26377818905013 74.076 0.24779 74.12 73.985 74.233 0.043983 16 10 2 0 0 0 0.39863 1 40856 40856 12.532 1.7076 1 1220300 32102 11539 21235 21646 37919 37919 0.010197228488550536 LGGWREES 8 Unmodified _LGGWREES_ 0 0 0 ENST00000379089.5_1_9:34398422-34398527:-|nuORF ENST00000379089.5_1_9:34398422-34398527:-|nuORF ENST00000379089.5_1_9:34398422-34398527:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2232055664062 2 467.224874 932.435195 NaN NaN NaN NaN NaN NaN NaN 96.179 1 96.179 95.679 96.679 0 0 0 0 0.97444 1 53152 53152 2.8892 0.58649 1 32103 12559 21236 21647 37920 37920 -0.03372549176094708 LGGYSWEN 8 Unmodified _LGGYSWEN_ 0 0 0 ENSG00000135686|ENST00000564996|KLHL36;ENST00000325279.4_1_16:84693236-84695736:+|nuORF;nc|ENSG00000135686|Q8N4N3-2|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 925.4042358398438 1 925.405023 924.397747 0.60532 0.00056017 -0.4768 -0.00044123 0.12852 0.00011893 925.4042959129478 74.989 0.28194 74.512 74.348 74.63 -0.47714 20 11 2 0 0 0 0.6895 1 41005 41005 18.135 0 1 2230000 32104 4731 21237 21648 37921 37921 -0.067476404417107 LGGYSWEN 8 Unmodified _LGGYSWEN_ 0 0 0 ENSG00000135686|ENST00000564996|KLHL36;ENST00000325279.4_1_16:84693236-84695736:+|nuORF;nc|ENSG00000135686|Q8N4N3-2|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 925.405023 924.397747 0.60532 0.00056017 -0.4768 -0.00044123 0.12852 0.00011893 925.4042959129478 74.989 0.28194 74.512 74.348 74.63 -0.47714 0.013306 0.00026494 NaN 18.135 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2230000 32105 4731 21237 21648 -0.067476404417107 LGHAGLVYE 9 Unmodified _LGHAGLVYE_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF;nc|ENSG00000132141|Q92526-2|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000577307.1_1_17:33266566-33269658:-|nuORF;nc|ENSG00000132141|Q92526-3|CCT6B nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7535095214844 2 479.753267 957.491981 0.7342 0.00035224 0.16966 8.1393E-05 0.90386 0.00043363 479.7531104076218 47.632 0.26159 47.28 47.125 47.387 -0.3526 24 12 3 0 0 0 0.25297 1 25530 25530 19.439 2.4967 1 3189300 32106 5791 21238 21649 37922 37922 0.011534983804153853 LGHAVAYV 8 Unmodified _LGHAVAYV_ 0 0 0 REV__ENSG00000173662|ENST00000333172|TAS1R1;REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2318420410156 2 415.231971 828.449388 -0.38766 -0.00016097 1.2812 0.00053201 0.89358 0.00037104 415.2321991847531 29.334 0.189 29.334 29.222 29.411 0 15 8 2 0 0 0 0.61999 1 15200 15200 24.21 0 1 637890 + 32107 22742;29790 21239 21650 37923 37923 0.028301480428467585 LGHDPYRLT 9 Unmodified _LGHDPYRLT_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON nc|ENSG00000159140|P18583-7|SON nc|ENSG00000159140|P18583-7|SON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2814331054688 2 536.282723 1070.55089 NaN NaN NaN NaN NaN NaN NaN 62.206 1 62.206 61.706 62.706 0 0 0 0 0.6306 1 34691 34691 11.64 0 1 32108 6628 21240 21651 37924 37924 0.018439746747390018 LGHESPLAM 9 Unmodified _LGHESPLAM_ 0 0 0 REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF REV__ENST00000570320.5_1_16:24931453-24947070:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.2409057617188 2 477.739302 953.464052 0.85023 0.00040619 2.0905 0.00099872 2.9407 0.0014049 477.73939771024243 49.878 0.32816 44.339 44.218 44.546 -5.5391 31 20 2 0 0 0 0.062661 1 31133 31133 30.225 0 1 11904000 + 32109 20492 21241 21652 37925 37925 -0.014541478713113065 LGHGPGCF 8 Unmodified _LGHGPGCF_ 0 0 0 REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.182373046875 2 394.181423 786.348294 1.2394 0.00048854 -1.0486 -0.00041333 0.1908 7.5209E-05 394.1809473981331 33.412 0.57405 29.426 29.284 29.858 -3.9853 59 32 2 0 0 0 0.80044 1 19388 19388 6.3541 0 1 67673000 + 32110 27176 21242 21653 37926 37926 -0.05342626931508221 LGHGPGCF 8 Unmodified _LGHGPGCF_ 0 0 0 REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.181423 786.348294 -0.45558 -0.00017958 -0.68801 -0.0002712 -1.1436 -0.00045078 394.1810781267017 29.515 0.2318 29.515 29.411 29.643 0 -0.013497 0.00017637 NaN 6.3541 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 10530000 + 32111 27176 21242 21653 -0.05342626931508221 LGHGPGCF 8 Unmodified _LGHGPGCF_ 0 0 0 REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF REV__ENST00000448507.5_1_4:7033328-7033451:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.181423 786.348294 0.67087 0.00026444 -0.68781 -0.00027112 -0.016942 -6.6784E-06 394.1811783734 29.725 0.39348 29.644 29.501 29.895 -0.080429 0.11574 0.00017653 NaN 6.3541 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 28571000 + 32112 27176 21242 21653 -0.05342626931508221 LGHHFLLVL 9 Unmodified _LGHHFLLVL_ 0 0 0 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.2132263183594 3 350.214922 1047.62294 -0.48142 -0.0001686 -3.0548 -0.0010698 -3.5362 -0.0012384 350.5483135915926 19.817 0.12364 19.845 19.788 19.912 0.028357 10 6 2 0 0 0 0.21242 1 9984 9984 2.9952 0.49676 1 580240 32113 10532 21243 21654 37927 37927 0.101029338191438 LGHKCGAW 8 Unmodified _LGHKCGAW_ 0 0 0 ENST00000394272.7_1_15:91475074-91475298:-|nuORF ENST00000394272.7_1_15:91475074-91475298:-|nuORF ENST00000394272.7_1_15:91475074-91475298:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.21630859375 2 436.215798 870.417042 0.66334 0.00028936 0.019197 8.3742E-06 0.68254 0.00029774 436.21572309861926 73.475 0.22099 72.999 72.871 73.092 -0.47588 16 9 2 0 0 0 0.80992 1 40188 40188 0.69038 0.69038 1 648990 32114 12733 21244 21655 37928 37928 -0.02334962631800863 LGHLAALF 8 Unmodified _LGHLAALF_ 0 0 0 REV__ENSG00000204439|ENST00000375911|C6orf47 REV__ENSG00000204439|ENST00000375911|C6orf47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2498474121094 2 421.250163 840.485774 0.35581 0.00014988 0.25239 0.00010632 0.6082 0.0002562 421.25028620602683 67.355 0.25739 67.373 67.197 67.455 0.018028 22 12 2 0 0 0 0.61999 1 36977 36977 24.21 7.1234 1 2764700 + 32115 24170 21245 21656 37929 37929 0.05915024939554314 LGHLKPLA 8 Unmodified _LGHLKPLA_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20221201_MKP_PDAC_01 4 424.7716674804688 2 424.771263 847.527973 NaN NaN NaN NaN NaN NaN NaN 108.35 1 102.17 101.67 102.67 -6.1757 0 0 0 0.97444 1 72417 72417 0 0 1 + 32116 21434 21246 21657 37930 37930 0.09811000347917798 LGHNKLLG 8 Unmodified _LGHNKLLG_ 0 0 0 ENSG00000158113|ENST00000339777|LRRC43;nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43 ENSG00000158113|ENST00000339777|LRRC43 ENSG00000158113|ENST00000339777|LRRC43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2608947753906 2 426.25852 850.502486 1.1511 0.00049066 -0.14038 -5.9839E-05 1.0107 0.00043083 426.2585884268965 38.122 0.59268 33.754 33.419 34.012 -4.3689 102 35 4 0 0 0 0.5953 1 22602 22602 26.341 0.94196 1 79216000 32117 6566 21247 21658 37931 37931 0.07125525825517798 LGICAPSRG 9 Unmodified _LGICAPSRG_ 0 0 0 REV__ENST00000278612.8_1_11:108068056-108093342:-|nuORF REV__ENST00000278612.8_1_11:108068056-108093342:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2334899902344 2 437.234187 872.453822 0.18947 8.2845E-05 -1.4638 -0.00064004 -1.2744 -0.0005572 437.23364024753425 54.195 0.28011 54.128 53.981 54.262 -0.066936 27 13 3 0 0 0 0.56345 1 29411 29411 3.5965 3.5965 1 2649600 + 32118 25181 21248 21659 37932 37932 0.012492891941178641 LGIFGDIL 8 Unmodified _LGIFGDIL_ 0 0 0 ENSG00000133317|ENST00000394618|LGALS12;nc|ENSG00000133317|Q96DT0-6|LGALS12;nc|ENSG00000133317|Q96DT0-3|LGALS12;nc|ENSG00000133317|Q96DT0|LGALS12;nc|ENSG00000133317|Q96DT0-7|LGALS12;nc|ENSG00000133317|Q96DT0-4|LGALS12;nc|ENSG00000133317|Q96DT0-2|LGALS12 ENSG00000133317|ENST00000394618|LGALS12 ENSG00000133317|ENST00000394618|LGALS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 847.4917602539062 1 847.492381 846.485105 0.0029155 2.4708E-06 1.6329 0.0013838 1.6358 0.0013863 847.4939727591342 83.301 0.31326 82.803 82.672 82.985 -0.49751 20 12 2 0 0 0 0.70131 1 45586 45586 17.087 0 1 720260 32119 4507 21249 21660 37933 37933 0.055721854998637355 LGIHEDSTNR 10 Unmodified _LGIHEDSTNR_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1918640136719 3 381.191393 1140.55235 NaN NaN NaN NaN NaN NaN NaN 17.714 1 17.714 17.214 18.214 0 0 0 0 0.97784 1 8751 8751 3.0723 1.8789 1 32120 1671 21250 21661 37934 37934 -0.012304360271400583 LGIHEDSTNR 10 Unmodified _LGIHEDSTNR_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1914978027344 3 381.191393 1140.55235 -0.55176 -0.00021033 0.0049764 1.8969E-06 -0.54679 -0.00020843 381.1912374586617 17.852 0.068298 17.866 17.844 17.913 0.013866 9 5 2 0 0 0 0.6891 1 8912 8912 4.1166 2.3744 1 432490 32121 1671 21250 21661 37935 37935 -0.012304360271400583 LGILFHAF 8 Unmodified _LGILFHAF_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|58|2|anti-sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|58|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.266845703125 2 459.265813 916.517074 1.2551 0.00057641 1.1013 0.0005058 2.3564 0.0010822 459.266627647515 37.648 0.42107 33.279 33.034 33.456 -4.3689 40 24 2 0 0 0 0.61999 1 22048 22048 24.21 7.1234 1 17668000 + 32122 29412 21251 21662 37936 37936 0.05547597973657048 LGILNIILILA 11 Unmodified _LGILNIILILA_ 0 0 0 nc|ENSG00000164073|Q8NHS3-2|MFSD8;ENST00000505284.5_1_4:128842916-128886288:-|nuORF;ENST00000515130.5_1_4:128842916-128886236:-|nuORF;ENSG00000164073|ENST00000641686|MFSD8 nc|ENSG00000164073|Q8NHS3-2|MFSD8 nc|ENSG00000164073|Q8NHS3-2|MFSD8 MSMS AL20221201_MKP_PDAC_01 4 389.2701416015625 3 389.268804 1164.78458 NaN NaN NaN NaN NaN NaN NaN 105.64 1 99.465 98.965 99.965 -6.1757 0 0 0 0.9435 1 70770 70770 0 0 1 32123 7131 21252 21663 37937 37937 0.208780580615894 LGIQCRDV 8 Unmodified _LGIQCRDV_ 0 0 0 nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3 nc|ENSG00000134014|Q9H9T3-4|ELP3 nc|ENSG00000134014|Q9H9T3-4|ELP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2381591796875 2 452.23947 902.464386 0.24449 0.00011057 -2.7236 -0.0012317 -2.4792 -0.0011212 452.23825667084225 53.037 0.24403 52.586 52.438 52.682 -0.45173 16 12 2 0 0 0 0.73714 1 28687 28687 13.906 0 1 973850 32124 4551 21253 21664 37938 37938 0.009252718485413425 LGISMHKF 8 Unmodified _LGISMHKF_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7567138671875 2 466.754756 931.494958 NaN NaN NaN NaN NaN NaN NaN 89.209 1 88.705 88.205 89.205 -0.50423 0 0 0 0.95607 1 48778 48778 9.3474 0.75416 1 32125 7290 21254 21665 37939 37939 0.02647050233599657 LGIWEPLAV 9 Unmodified _LGIWEPLAV_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2884521484375 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 46.612 1 46.612 46.112 47.112 0 0 0 0 0.36554 1 25481 25481 21.747 3.3736 1 32126 6997 21255 21666 37940 37940 0.06599832453991894 LGKDPRLT 8 Unmodified _LGKDPRLT_ 0 0 0 REV__ENSG00000163825|ENST00000296142|RTP3 REV__ENSG00000163825|ENST00000296142|RTP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7591857910156 2 450.269084 898.523616 -0.072603 -3.2691E-05 0.35604 0.00016031 0.28344 0.00012762 450.26923342564265 38.498 0.31117 38.212 38.071 38.382 -0.28687 42 14 4 0 0 0 8.7369 1 20210 20210 13.508 5.5977 1 19060000 + 32127 21822 21256 21667 37941 37941 0.07029491134358068 LGKDWIMYK 9 Unmodified _LGKDWIMYK_ 0 0 0 REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1 REV__nc|ENSG00000173401|Q6UWM5-2|GLIPR1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5302124023438 3 385.207327 1152.60015 1.1598 0.00044677 -0.57612 -0.00022192 0.58369 0.00022484 385.2070433597713 45.73 0.62762 40.775 40.464 41.091 -4.9549 53 41 2 0 0 0 0.20728 1 27963 27963 9.544 4.647 1 85827000 + 32128 22725 21257 21668 37942 37942 0.029955466393403185 LGKGPAQR 8 Unmodified _LGKGPAQR_ 0 0 0 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7484741210938 2 413.748319 825.482085 -0.24215 -0.00010019 0.49171 0.00020344 0.24956 0.00010326 413.74860252581 33.253 0.15958 33.094 32.984 33.144 -0.15918 10 6 2 0 0 0 8.7369 1 17356 17356 5.2307 0 1 808860 + 32129 29935 21258 21669 37943 37943 0.062363551657085736 LGKHNLAV 8 Unmodified _LGKHNLAV_ 0 0 0 REV__ENSG00000106397|ENST00000223127|PLOD3 REV__ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2588500976562 2 426.25852 850.502486 -0.60493 -0.00025785 0.69324 0.0002955 0.088318 3.7646E-05 426.25881340766153 34.023 0.26721 34.023 33.888 34.156 0 24 13 3 0 0 0 0.41521 1 17880 17880 42.968 0.87343 1 8213600 + 32130 18505 21259 21670 37944 37944 0.07125525825506429 LGKHNLAV 8 Unmodified _LGKHNLAV_ 0 0 0 REV__ENSG00000106397|ENST00000223127|PLOD3 REV__ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2591857910156 2 426.25852 850.502486 -0.27044 -0.00011528 0.67856 0.00028924 0.40811 0.00017396 426.25888832040715 34.186 0.36025 33.994 33.77 34.13 -0.19131 28 13 3 0 0 0 0.50586 1 17808 17808 34.187 0.084896 1 6229100 + 32131 18505 21259 21670 37945 37945 0.07125525825506429 LGKKHKGG 8 Unmodified _LGKKHKGG_ 0 0 0 ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7589111328125 2 412.758687 823.502821 -0.11973 -4.942E-05 -0.058718 -2.4236E-05 -0.17845 -7.3656E-05 412.75841862362677 42.125 0.17945 41.818 41.72 41.9 -0.30682 13 8 2 0 0 0 0.80143 1 22359 22359 5.7604 0 1 10142000 32132 10724;15552 21260 21671 37946 37946 0.0840094554538382 LGKKHKGG 8 Unmodified _LGKKHKGG_ 0 0 0 ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7586975097656 2 412.758687 823.502821 -0.35537 -0.00014668 -0.19428 -8.0192E-05 -0.54965 -0.00022687 412.7586176712204 41.804 0.22298 41.802 41.721 41.944 -0.0017891 20 10 3 0 0 0 0.80143 1 22364 22364 5.7604 0 1 10614000 32133 10724;15552 21260 21671 37947 37947 0.0840094554538382 LGKKHKGG 8 Unmodified _LGKKHKGG_ 0 0 0 ENSG00000244045|ENST00000292114|TMEM199;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199;ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENSG00000244045|ENST00000292114|TMEM199 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.7583618164062 2 412.758687 823.502821 0.65341 0.0002697 0.4512 0.00018624 1.1046 0.00045593 412.75881280961056 46.422 0.26874 41.342 41.175 41.444 -5.0805 31 21 2 0 0 0 0.80143 1 28596 28596 5.7604 0 1 40280000 32134 10724;15552 21260 21671 37948 37948 0.0840094554538382 LGKLEPHVF 9 Unmodified _LGKLEPHVF_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593411.1_1_19:17213013-17214246:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3004760742188 2 520.300384 1038.58622 0.70232 0.00036542 -0.63647 -0.00033116 0.065848 3.4261E-05 520.2999713223679 66.809 1.5503 66.826 66.611 68.161 0.017853 206 76 7 0 0 0 0.2143 1 36905 36905 21.747 1.3321 1 668480000 32135 1694 21261 21672 37949 37949 0.06846637202556849 LGKLEPHVF 9 Unmodified _LGKLEPHVF_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B;ENST00000593411.1_1_19:17213013-17214246:+|nuORF nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3013916015625 2 520.300384 1038.58622 1.261 0.00065611 0.38163 0.00019856 1.6426 0.00085467 520.300075692523 89.415 1.7004 83.239 82.373 84.074 -6.1757 366 95 5 0 0 0 0.32871 1 58570 58570 15.847 0.5987 1 567260000 32136 1694 21261 21672 37950 37950 0.06846637202556849 LGKQRWWT 8 Unmodified _LGKQRWWT_ 0 0 0 REV__nc|ENSG00000146904|P21709-3|EPHA1 REV__nc|ENSG00000146904|P21709-3|EPHA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1074.749145507812 1 1074.58432 1073.57705 0.38761 0.00041652 -0.94985 -0.0010207 -0.56224 -0.00060417 1074.583731663648 83.617 0.25828 83.119 82.985 83.243 -0.49751 17 10 2 0 0 0 0.80992 1 45700 45700 0.69038 0 1 1115700 + 32137 29689 21262 21673 37951 37951 0.04320288636904479 LGKVKHGG 8 Unmodified _LGKVKHGG_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2451171875 2 398.245412 794.476272 -0.25861 -0.00010299 0.17504 6.9709E-05 -0.083575 -3.3283E-05 398.24544792607446 34.754 0.26028 34.563 34.417 34.677 -0.19131 20 11 2 0 0 0 0.74163 1 18145 18145 13.508 0 1 7374400 + 32138 24691 21263 21674 37952 37952 0.07081256654043955 LGKVKHGG 8 Unmodified _LGKVKHGG_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2457275390625 2 398.245412 794.476272 1.0689 0.0004257 -0.40428 -0.000161 0.66466 0.0002647 398.2450512569157 38.123 0.43322 33.754 33.531 33.964 -4.3689 54 25 3 0 0 0 0.74163 2 22380 22380;22515 13.508 4.1604 1 32016000 + 32139 24691 21263 21674 37953;37954 37953 0.07081256654043955 LGKVKHGG 8 Unmodified _LGKVKHGG_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 398.245412 794.476272 -0.63712 -0.00025373 0.61255 0.00024395 -0.024565 -9.7828E-06 398.24569054682536 34.653 0.19316 34.653 34.54 34.733 0 0.082643 0.00019678 NaN 13.508 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1782700 + 32140 24691 21263 21674 0.07081256654043955 LGKVKHGG 8 Unmodified _LGKVKHGG_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 398.245412 794.476272 -0.25861 -0.00010299 0.17504 6.9709E-05 -0.083575 -3.3283E-05 398.24544792607446 34.754 0.26028 34.563 34.417 34.677 -0.19131 -0.0070191 -0.00015169 NaN 13.508 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 7374400 + 32141 24691 21263 21674 0.07081256654043955 LGKVKHGG 8 Unmodified _LGKVKHGG_ 0 0 0 REV__ENSG00000283439|ENST00000636696|SPEM3 REV__ENSG00000283439|ENST00000636696|SPEM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 398.245412 794.476272 -0.054501 -2.1705E-05 0.11948 4.7581E-05 0.064977 2.5877E-05 398.24537657377283 34.467 0.21453 34.494 34.391 34.606 0.027405 -0.075624 -0.00019595 NaN 13.508 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1525100 + 32142 24691 21263 21674 0.07081256654043955 LGKVSLDIAAE 11 Unmodified _LGKVSLDIAAE_ 0 0 0 REV__nc|ENSG00000114374|O00507-2|USP9Y REV__nc|ENSG00000114374|O00507-2|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.5481262207031 3 372.548406 1114.62339 -0.22233 -8.283E-05 0.097828 3.6446E-05 -0.1245 -4.6384E-05 372.5484036434834 51.919 0.3689 51.919 51.71 52.079 0 51 16 4 0 0 0 0.631 1 28766 28766 9.7643 1.0188 1 83933000 + 32143 18910 21264 21675 37955 37955 0.0706626395767671 LGKVVSIP 8 Unmodified _LGKVVSIP_ 0 0 0 REV__ENSG00000138823|ENST00000265517|MTTP REV__ENSG00000138823|ENST00000265517|MTTP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.5234985351562 1 812.524016 811.516739 0.1213 9.8559E-05 1.0249 0.00083273 1.1462 0.00093129 812.5246164673162 68.531 0.32891 68.531 68.35 68.679 0 27 14 2 0 0 0 0.67481 1 38145 38145 19.439 0 1 1269900 + 32144 20375 21265 21676 37956 37956 0.10344178253808423 LGLCSALVSF 10 Unmodified _LGLCSALVSF_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MSMS AL20221201_MKP_PDAC_01 4 505.2707824707031 2 505.272978 1008.5314 NaN NaN NaN NaN NaN NaN NaN 87.629 1 81.453 80.953 81.953 -6.1757 0 0 0 0.087592 1 57792 57792 52.268 3.9225 1 + 32145 20701 21266 21677 37957 37957 0.027478823396336338 LGLDLTVTC 9 Unmodified _LGLDLTVTC_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MSMS AL20221201_MKP_PDAC_01 4 467.7484130859375 2 467.749336 933.484119 NaN NaN NaN NaN NaN NaN NaN 73.386 1 67.211 66.711 67.711 -6.1757 0 0 0 0.050352 1 47992 47992 57.471 9.1255 1 + 32146 18886 21267 21678 37958 37958 0.014716030686372505 LGLDPVIPS 9 Unmodified _LGLDPVIPS_ 0 0 0 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.5245971679688 1 910.52441 909.517133 0.052696 4.7981E-05 0.53103 0.00048351 0.58372 0.00053149 910.5247628988469 89.132 0.4501 88.628 88.347 88.797 -0.50423 56 19 4 0 0 0 0.0083087 1 48738 48738 97.075 4.2525 1 7634900 + 32147 29746 21268 21679 37959 37959 0.05875553183000193 LGLDPVIPS 9 Unmodified _LGLDPVIPS_ 0 0 0 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.5256958007812 1 910.52441 909.517133 -0.39633 -0.00036087 0.51021 0.00046456 0.11388 0.00010369 910.5247518462452 98.931 0.27491 92.756 92.648 92.923 -6.1757 42 18 3 0 0 0 0.0088975 3 65849 65664;65787;65849 104.8 4.4277 1 203490000 + 32148 29746 21268 21679 37960;37961;37962 37962 0.05875553183000193 LGLFLLLLLA 10 Unmodified _LGLFLLLLLA_ 0 0 0 REV__ENSG00000073067|ENST00000308919|CYP2W1 REV__ENSG00000073067|ENST00000308919|CYP2W1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8258666992188 2 543.370278 1084.726 NaN NaN NaN NaN NaN NaN NaN 102.11 1 102.06 101.56 102.56 -0.045853 0 0 0 1.0019 1 56720 56720 0.45834 0 1 + 32149 17531 21269 21680 37963 37963 0.18703001487119764 LGLGAFGF 8 Unmodified _LGLGAFGF_ 0 0 0 nc|ENSG00000162813|O95861-3|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1;nc|ENSG00000162813|O95861-4|BPNT1 nc|ENSG00000162813|O95861-3|BPNT1 nc|ENSG00000162813|O95861-3|BPNT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2113647460938 2 391.215789 780.417025 1.3119 0.00051323 0.59091 0.00023117 1.9028 0.0007444 391.21595141009186 48.424 0.43295 43.19 42.988 43.421 -5.2339 46 25 2 0 0 0 0.80044 1 30028 30028 6.3541 0 1 34884000 32150 6916 21270 21681 37964 37964 0.018033606398603297 LGLGRSLF 8 Unmodified _LGLGRSLF_ 0 0 0 REV__ENST00000326764.9_2_19:54972153-54972195:+|nuORF REV__ENST00000326764.9_2_19:54972153-54972195:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7616577148438 2 431.760895 861.507237 0.69049 0.00029813 -0.013547 -5.8492E-06 0.67695 0.00029228 431.76077263180497 47.601 0.22578 47.562 47.435 47.661 -0.038643 17 10 2 0 0 0 0.28079 1 25653 25653 57.471 6.6163 1 3223200 + 32151 25566 21271 21682 37965 37965 0.07094409968283344 LGLHGWFW 8 Unmodified _LGLHGWFW_ 0 0 0 REV__ENSG00000186204|ENST00000550308|CYP4F12 REV__ENSG00000186204|ENST00000550308|CYP4F12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2881164550781 2 508.261062 1014.50757 0.57132 0.00029038 -2.4931 -0.0012671 -1.9218 -0.00097677 508.2601085906625 69.754 0.23808 63.578 63.427 63.665 -6.1757 16 12 2 0 0 0 8.7369 1 45571 45571 6.3541 0 1 12282000 + 32152 23560 21272 21683 37966 37966 0.0008982968813597836 LGLICDGC 8 Unmodified _LGLICDGC_ 0 0 0 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1834716796875 2 397.182774 792.350996 NaN NaN NaN NaN NaN NaN NaN 77.829 1 77.829 77.329 78.329 0 0 0 0 0.97444 1 43265 43265 0.79363 0.19213 1 32153 9842 21273 21684 37967 37967 -0.05348539588862877 LGLLLGRG 8 Unmodified _LGLLLGRG_ 0 0 0 REV__ENSG00000167740|ENST00000301391|CYB5D2 REV__ENSG00000167740|ENST00000301391|CYB5D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.7638854980469 2 399.763438 797.512323 0.33537 0.00013407 0.28748 0.00011492 0.62285 0.00024899 399.7634222398535 52.169 0.3276 52.11 51.961 52.289 -0.058918 32 15 3 0 0 0 0.28922 1 28250 28250 56.541 0 1 5082700 + 32154 22250 21274 21685 37968 37968 0.10546713830910903 LGLMYFIHY 9 Unmodified _LGLMYFIHY_ 0 0 0 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.798095703125 2 578.79662 1155.57869 NaN NaN NaN NaN NaN NaN NaN 52.995 1 52.995 52.495 53.495 0 0 0 0 0.82015 1 29347 29347 5.2307 0 1 32155 8587 21275 21686 37969 37969 0.00712161610658768 LGLPQWGLHL 10 Unmodified _LGLPQWGLHL_ 0 0 0 ENST00000520427.1_1_5:139931625-139936746:-|nuORF ENST00000520427.1_1_5:139931625-139936746:-|nuORF ENST00000520427.1_1_5:139931625-139936746:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.31982421875 2 567.326934 1132.63931 -0.024183 -1.3719E-05 -0.63047 -0.00035768 -0.65465 -0.0003714 567.3264864134093 53.499 0.39537 53.435 53.157 53.552 -0.063423 67 19 5 0 0 0 0.30444 1 28943 28943 32.305 11.852 1 169560000 32156 14728 21276 21687 37970 37970 0.07830014985233902 LGLQLIYY 8 Unmodified _LGLQLIYY_ 0 0 0 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 MSMS AL20221201_MKP_PDAC_01 4 491.7852172851562 2 491.784036 981.553519 NaN NaN NaN NaN NaN NaN NaN 95.715 1 89.539 89.039 90.039 -6.1757 0 0 0 0.93066 1 63401 63401 14.582 0 1 32157 16527 21277 21688 37971 37971 0.062004300797070755 LGLRRPNRGAR 11 Unmodified _LGLRRPNRGAR_ 0 0 0 ENST00000445369.2_1_16:3063106-3063379:+|nuORF ENST00000445369.2_1_16:3063106-3063379:+|nuORF ENST00000445369.2_1_16:3063106-3063379:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.5925598144531 3 422.593566 1264.75887 NaN NaN NaN NaN NaN NaN NaN 81.211 1 75.035 74.535 75.535 -6.1757 0 0 0 0.94011 1 53297 53297 2.4348 0.69251 1 32158 13457 21278 21689 37972 37972 0.13708021382512925 LGLSLGHF 8 Unmodified _LGLSLGHF_ 0 0 0 REV__ENSG00000146005|ENST00000274710|PSD2 REV__ENSG00000146005|ENST00000274710|PSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2398986816406 2 422.239796 842.465038 -0.5976 -0.00025233 1.1659 0.00049227 0.56825 0.00023994 422.24013400910366 26.785 0.25151 26.785 26.679 26.93 0 16 11 2 0 0 0 0.77907 1 13773 13773 10.183 0.83596 1 884140 + 32159 20804 21279 21690 37973 37973 0.03750434559901805 LGLSSSWELQL 11 Unmodified _LGLSSSWELQL_ 0 0 0 nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3 nc|ENSG00000182652|Q8NH05|OR4Q3 nc|ENSG00000182652|Q8NH05|OR4Q3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.8311767578125 2 616.829703 1231.64485 0.46973 0.00028974 1.1396 0.00070292 1.6093 0.00099266 616.8306223354257 50.223 0.16791 50.223 50.114 50.282 0 12 7 2 0 0 0 0.63851 1 27693 27693 9.3831 3.1773 1 1044700 32160 9075 21280 21691 37974 37974 0.0382964898640239 LGLSSSWELQL 11 Unmodified _LGLSSSWELQL_ 0 0 0 nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3 nc|ENSG00000182652|Q8NH05|OR4Q3 nc|ENSG00000182652|Q8NH05|OR4Q3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 616.829703 1231.64485 1.2426 0.00076648 2.7304 0.0016842 3.973 0.0024506 616.8321425235853 50.542 0.20322 50.488 50.347 50.55 -0.053875 0.13239 0.0013463 NaN 9.3831 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 936210 32161 9075 21280 21691 0.0382964898640239 LGLTTKSV 8 Unmodified _LGLTTKSV_ 0 0 0 REV__ENST00000590207.1_1_2:11268741-11272130:-|nuORF REV__ENST00000590207.1_1_2:11268741-11272130:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.7530822753906 2 409.752736 817.490919 1.37 0.00056137 1.0232 0.00041926 2.3932 0.00098062 409.7530327886891 37.514 0.4929 33.231 32.974 33.467 -4.2835 67 29 3 0 0 0 0.75262 1 22162 22162 12.532 0 1 29048000 + 32162 29146 21281 21692 37975 37975 0.07487284011529027 LGMRSKQQF 9 Unmodified _LGMRSKQQF_ 0 0 0 REV__ENST00000446372.2_1_10:10834458-10836861:-|nuORF REV__ENST00000446372.2_1_10:10834458-10836861:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7950439453125 2 547.792401 1093.57025 0.87365 0.00047858 -0.88319 -0.00048381 -0.0095413 -5.2267E-06 547.7919031098778 46.336 0.49665 46.336 46.068 46.565 0 41 23 2 0 0 0 0.32871 1 25405 25405 15.847 0 1 15133000 + 32163 27140 21282 21693 37976 37976 0.02720607694004684 LGMWIPYRG 9 Unmodified _LGMWIPYRG_ 0 0 0 ENST00000406134.5_1_2:47637332-47637386:+|nuORF ENST00000406134.5_1_2:47637332-47637386:+|nuORF ENST00000406134.5_1_2:47637332-47637386:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.292236328125 2 546.786587 1091.55862 0.77303 0.00042268 0.96148 0.00052573 1.7345 0.00094841 546.7871540279336 51.113 0.46887 51.113 50.833 51.302 0 90 23 5 0 0 0 0.48152 1 28084 28084 8.5933 2.8329 1 323980000 32164 12927 21283 21694 37977 37977 0.016504106706634047 LGNKAILY 8 Unmodified _LGNKAILY_ 0 0 0 nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1;ENSG00000138658|ENST00000505019|ZGRF1 nc|ENSG00000138658|Q86YA3-3|ZGRF1 nc|ENSG00000138658|Q86YA3-3|ZGRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2694091796875 2 446.268553 890.522553 1.2024 0.00053658 -0.097933 -4.3705E-05 1.1044 0.00049288 446.2685061091603 42.714 0.39095 38.029 37.869 38.26 -4.6846 58 24 3 0 0 0 0.63229 1 25963 25963 23.148 5.0134 1 28650000 32165 5080 21284 21695 37978 37978 0.07291276765465682 LGNLWATEL 9 Unmodified _LGNLWATEL_ 0 0 0 REV__nc|nan|Q6ZRI6-3|C15orf39 REV__nc|nan|Q6ZRI6-3|C15orf39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7755432128906 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 73.501 1 73.025 72.525 73.525 -0.47588 0 0 0 0.57317 1 40225 40225 13.508 0 1 + 32166 22188 21285 21696 37979 37979 0.02670054068948957 LGNNNEFDWF 10 Unmodified _LGNNNEFDWF_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2747802734375 2 628.272552 1254.53055 0.12634 7.9376E-05 -1.4109 -0.00088645 -1.2846 -0.00080708 628.2710252670281 64.922 0.26356 64.922 64.853 65.117 0 18 12 2 0 0 0 0.68719 1 36210 36210 4.3292 0 1 1384300 + 32167 21352 21286 21697 37980 37980 -0.08653240775743143 LGNNNEFDWF 10 Unmodified _LGNNNEFDWF_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 628.272552 1254.53055 0.12634 7.9376E-05 -1.4109 -0.00088645 -1.2846 -0.00080708 628.2710252670281 64.922 0.26356 64.922 64.853 65.117 0 0 0 NaN 4.3292 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1384300 + 32168 21352 21286 21697 -0.08653240775743143 LGNPFSTPV 9 Unmodified _LGNPFSTPV_ 0 0 0 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2;ENST00000579586.1_1_17:17810817-17875627:-|nuORF;ENST00000537091.2_1_17:17772601-17875627:-|nuORF nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;ENST00000537091.2_1_17:17772601-17875627:-|nuORF nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7326965332031 2 466.247818 930.481082 0.48101 0.00022427 1.7613 0.0008212 2.2423 0.0010455 466.24897033729843 47.003 0.43197 47.003 46.858 47.29 0 42 20 3 0 0 0 0.30562 1 25659 25659 16.942 0 1 7652400 32169 8535;14985 21287 21698 37981 37981 0.013060960061466176 LGNVYFFDI 9 Unmodified _LGNVYFFDI_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2745971679688 2 544.276575 1086.5386 0.069576 3.7869E-05 -3.2242 -0.0017549 -3.1547 -0.001717 544.2751800030129 40.211 0.14651 40.211 40.11 40.257 0 8 6 2 0 0 0 0.19891 1 21547 21547 11.64 3.7301 1 890440 32170 8967 21288 21699 37982 37982 -0.0012106178828616976 LGPAGVPGPS 10 Unmodified _LGPAGVPGPS_ 0 0 0 REV__ENSG00000187498|ENST00000375820|COL4A1 REV__ENSG00000187498|ENST00000375820|COL4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 851.4625854492188 1 851.462144 850.454868 -0.056627 -4.8216E-05 1.0138 0.00086318 0.95713 0.00081496 851.4630921051353 67.405 0.23053 66.922 66.822 67.053 -0.48218 12 9 2 0 0 0 0.19662 1 36816 36816 34.102 5.6156 1 470920 + 32171 23636 21289 21700 37983 37983 0.023658268346594014 LGPAHRHL 8 Unmodified _LGPAHRHL_ 0 0 0 ENST00000564098.5_1_16:1794388-1794685:+|nuORF ENST00000564098.5_1_16:1794388-1794685:+|nuORF ENST00000564098.5_1_16:1794388-1794685:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7620544433594 2 450.761761 899.508969 NaN NaN NaN NaN NaN NaN NaN 74.936 1 74.459 73.959 74.959 -0.47714 0 0 0 0.97444 1 41013 41013 2.8892 0 1 32172 15376 21290 21701 37984 37984 0.05519463776875 LGPDPAFGL 9 Unmodified _LGPDPAFGL_ 0 0 0 ENST00000472100.5_1_7:1468322-1474217:-|nuORF ENST00000472100.5_1_7:1468322-1474217:-|nuORF ENST00000472100.5_1_7:1468322-1474217:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7364501953125 2 443.737086 885.459619 NaN NaN NaN NaN NaN NaN NaN 57.283 1 57.283 56.783 57.783 0 0 0 0 0.43505 1 31875 31875 18.135 0 1 32173 13894 21291 21702 37985 37985 0.01230710977426952 LGPDYTAIA 9 Unmodified _LGPDYTAIA_ 0 0 0 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.5589599609375 1 920.472374 919.465098 0.22457 0.00020671 -0.1936 -0.0001782 0.030969 2.8506E-05 920.4722324308971 75.425 0.3211 75.425 75.25 75.571 0 19 13 2 0 0 0 0.62242 1 41880 41880 0 0 1 922120 32174 755 21292 21703 37986 37986 0.0021438976921217545 LGPGECRGL 9 Unmodified _LGPGECRGL_ 0 0 0 REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF REV__ENST00000396504.6_1_22:41923998-41924697:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.2322998046875 2 451.231645 900.448736 NaN NaN NaN NaN NaN NaN NaN 80.73 1 74.554 74.054 75.054 -6.1757 0 0 0 0.6032 1 52968 52968 12.532 2.3482 1 + 32175 26507 21293 21704 37987 37987 -0.0054701466849564895 LGPIQRAL 8 Unmodified _LGPIQRAL_ 0 0 0 ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2729187011719 2 434.27417 866.533787 0.25567 0.00011103 -0.38964 -0.00016921 -0.13396 -5.8177E-05 434.27387854846523 48.817 0.28529 48.445 48.35 48.635 -0.37172 31 14 3 0 0 0 0.65867 1 26210 26210 20.871 0 1 6166300 32176 9476 21294 21705 37988 37988 0.09518098859598467 LGPIQRAL 8 Unmodified _LGPIQRAL_ 0 0 0 ENSG00000186448|ENST00000344387|ZNF197;nc|ENSG00000186448|O14709-2|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 ENSG00000186448|ENST00000344387|ZNF197 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 434.27417 866.533787 0.4884 0.0002121 1.4287 0.00062044 1.9171 0.00083254 434.2746464214049 48.528 0.24987 48.485 48.341 48.591 -0.04369 0.019805 0.0013755 NaN 20.871 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1620300 32177 9476 21294 21705 0.09518098859598467 LGPKAVVLG 9 Unmodified _LGPKAVVLG_ 0 0 0 REV__ENST00000493544.1_1_2:242066395-242066482:-|nuORF REV__ENST00000493544.1_1_2:242066395-242066482:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9239501953125 2 427.278921 852.543289 0.37946 0.00016214 -0.98432 -0.00042058 -0.60486 -0.00025844 427.27845991219186 59.342 0.30659 59.289 59.113 59.42 -0.053062 24 15 2 0 0 0 0.16785 1 32335 32335 23.148 0 1 6739500 + 32178 27923 21295 21706 37989 37989 0.11111867145132237 LGPPCICKGPY 11 Unmodified _LGPPCICKGPY_ 0 0 0 REV__ENSG00000156076|ENST00000286574|WIF1 REV__ENSG00000156076|ENST00000286574|WIF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.2221984863281 3 383.192801 1146.55657 1.579 0.00060507 2.4657 0.00094482 4.0447 0.0015499 383.1941733373781 21.68 0.20882 18.945 18.863 19.072 -2.7348 22 10 3 0 0 0 0.30452 1 11585 11585 0.45452 0.21867 1 1722900 + 32179 21308 21296 21707 37990 37990 -0.010843861294461021 LGPQRHVL 8 Unmodified _LGPQRHVL_ 0 0 0 REV__ENST00000544691.6_1_14:24911822-24911936:-|nuORF REV__ENST00000544691.6_1_14:24911822-24911936:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2778625488281 2 460.277244 918.539935 -0.10908 -5.0207E-05 0.82505 0.00037975 0.71597 0.00032954 460.27752586792326 25.505 0.33759 22.622 22.444 22.782 -2.8831 28 18 2 0 0 0 0.44122 1 13937 13937 40.449 0 1 5657000 + 32180 28641 21297 21708 37991 37991 0.07740617091121749 LGPQSVTVF 9 Unmodified _LGPQSVTVF_ 0 0 0 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.263916015625 2 474.263468 946.512382 0.53991 0.00025606 -0.084628 -4.0136E-05 0.45528 0.00021592 474.26345603033855 52.685 0.31642 52.248 52.097 52.414 -0.43736 37 15 3 0 0 0 0.20428 1 28432 28432 22.736 3.4793 1 9000200 + 32181 23219 21298 21709 37992 37992 0.03698669040238656 LGPQSVTVF 9 Unmodified _LGPQSVTVF_ 0 0 0 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2662048339844 2 474.263468 946.512382 0.98452 0.00046692 0.52212 0.00024762 1.5066 0.00071455 474.26376500195244 59.361 0.48409 53.247 52.99 53.474 -6.1147 53 26 3 0 0 0 0.08691 1 38012 38012 36.127 3.8215 1 53992000 + 32182 23219 21298 21709 37993 37993 0.03698669040238656 LGPRKDYWDF 10 Unmodified _LGPRKDYWDF_ 0 0 0 nc|ENSG00000188282|Q6ZNE9-3|RUFY4;ENSG00000188282|ENST00000697321|RUFY4 nc|ENSG00000188282|Q6ZNE9-3|RUFY4 nc|ENSG00000188282|Q6ZNE9-3|RUFY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849792480469 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 68.943 1 68.463 67.963 68.963 -0.48071 0 0 0 0.97044 1 37688 37688 3.8763 1.7903 1 32183 9644 21299 21710 37994 37994 -0.006117980909721155 LGPSELVEE 9 Unmodified _LGPSELVEE_ 0 0 0 REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7518310546875 2 486.747847 971.481142 1.4851 0.00072286 2.6683 0.0012988 4.1534 0.0020216 486.74886027727956 41.824 0.59994 37.216 36.936 37.536 -4.6079 106 37 4 0 0 0 0.30562 1 25025 25025 16.942 0 1 28479000 + 32184 28209 21300 21711 37995 37995 -0.005739487845175972 LGPTDIIKLLY 11 Unmodified _LGPTDIIKLLY_ 0 0 0 REV__ENSG00000126822|ENST00000247226|PLEKHG3 REV__ENSG00000126822|ENST00000247226|PLEKHG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.376953125 2 623.376289 1244.73803 0.91922 0.00057302 -0.24184 -0.00015076 0.67737 0.00042226 623.375916387633 98.47 0.14771 92.294 92.19 92.338 -6.1757 14 9 2 0 0 0 0.37825 1 65306 65306 22.658 2.2436 1 13872000 + 32185 19561 21301 21712 37996 37996 0.12544573439618034 LGPWRARVV 9 Unmodified _LGPWRARVV_ 0 0 0 REV__ENSG00000185271|ENST00000636854|KLHL33 REV__ENSG00000185271|ENST00000636854|KLHL33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.880859375 3 351.882054 1052.62433 -0.071916 -2.5306E-05 -3.0921 -0.001088 -3.164 -0.0011134 351.8812488754811 14.724 0.090208 14.73 14.657 14.747 0.0057764 8 3 3 0 0 0 0.54213 1 7310 7310 4.897 0.95262 1 890920 + 32186 23488 21302 21713 37997 37997 0.10012567907892844 LGPWRARVV 9 Unmodified _LGPWRARVV_ 0 0 0 REV__ENSG00000185271|ENST00000636854|KLHL33 REV__ENSG00000185271|ENST00000636854|KLHL33 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 351.882054 1052.62433 -0.071916 -2.5306E-05 -3.0921 -0.001088 -3.164 -0.0011134 351.8812488754811 14.724 0.090208 14.73 14.657 14.747 0.0057764 -0.029091 6.9265E-05 NaN 4.897 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 890920 + 32187 23488 21302 21713 0.10012567907892844 LGQAPIFEL 9 Unmodified _LGQAPIFEL_ 0 0 0 REV__ENST00000538784.2_1_12:132635515-132636943:+|nuORF REV__ENST00000538784.2_1_12:132635515-132636943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.5562133789062 1 987.550959 986.543683 0.029963 2.959E-05 0.88492 0.0008739 0.91488 0.00090349 987.5516023263503 81.612 0.34223 81.612 81.439 81.782 0 39 17 3 0 0 0 0.55775 1 45291 45291 3.9444 1.6417 1 1537400 + 32188 23456 21303 21714 37998 37998 0.049872420743326984 LGQDYRAVF 9 Unmodified _LGQDYRAVF_ 0 0 0 ENST00000501356.5_1_11:94890886-94890937:+|nuORF ENST00000501356.5_1_11:94890886-94890937:+|nuORF ENST00000501356.5_1_11:94890886-94890937:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7780151367188 2 534.777274 1067.53999 1.3703 0.00073278 0.62526 0.00033437 1.9955 0.0010672 534.7767121818268 58.79 0.66137 52.715 52.439 53.1 -6.0745 119 36 5 0 0 0 0.10734 2 37733 37595;37733 32.305 6.0373 1 124370000 32189 14445 21304 21715 37999;38000 38000 0.008925723004722386 LGQDYRAVF 9 Unmodified _LGQDYRAVF_ 0 0 0 ENST00000501356.5_1_11:94890886-94890937:+|nuORF ENST00000501356.5_1_11:94890886-94890937:+|nuORF ENST00000501356.5_1_11:94890886-94890937:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.777274 1067.53999 0.25146 0.00013447 -0.21472 -0.00011483 0.036735 1.9645E-05 534.7771777802911 52.553 0.34833 52.553 52.402 52.75 0 -0.051545 -0.00059249 NaN 32.305 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 20861000 32190 14445 21304 21715 0.008925723004722386 LGQGCFCF 8 Unmodified _LGQGCFCF_ 0 0 0 REV__ENST00000508535.1_1_4:38802554-38806811:-|nuORF REV__ENST00000508535.1_1_4:38802554-38806811:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 437.9076538085938 2 437.682942 873.35133 NaN NaN NaN NaN NaN NaN NaN 41.429 1 36.821 36.321 37.321 -4.6079 0 0 0 0.94749 1 24877 24877 11.114 4.7604 1 + 32191 28083 21305 21716 38001 38001 -0.09041119869016256 LGQGFALT 8 Unmodified _LGQGFALT_ 0 0 0 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 REV__nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.7244262695312 2 403.723978 805.433404 0.68428 0.00027626 -0.32039 -0.00012935 0.36389 0.00014691 403.72390173609483 72.922 0.2448 72.447 72.318 72.563 -0.47588 12 10 2 0 0 0 0.80722 1 39913 39913 2.3027 0 1 340630 + 32192 17290 21306 21717 38002 38002 0.02290441805928367 LGQPYTIPTL 10 Unmodified _LGQPYTIPTL_ 0 0 0 REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF REV__ENST00000419413.1_1_X:136523419-136523611:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8121337890625 2 551.810782 1101.60701 NaN NaN NaN NaN NaN NaN NaN 67.019 1 67.037 66.537 67.537 0.018028 0 0 0 0.41201 1 36780 36780 30.637 3.0077 1 + 32193 20149 21307 21718 38003 38003 0.06027182791558516 LGQQQQQLYSS 11 Unmodified _LGQQQQQLYSS_ 0 0 0 ENSG00000168556|ENST00000302327|ING2 ENSG00000168556|ENST00000302327|ING2 ENSG00000168556|ENST00000302327|ING2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.5480041503906 3 427.214086 1278.62043 -0.48151 -0.00020571 0.055293 2.3622E-05 -0.42621 -0.00018208 427.2140753054702 18.491 0.17147 18.491 18.385 18.556 0 34 20 2 0 0 0 0.73349 1 9175 9175 1.1098 0.33322 1 2336800 32194 7780 21308 21719 38004 38004 -0.007736111671420076 LGQRPFTSY 9 Unmodified _LGQRPFTSY_ 0 0 0 REV__ENST00000466778.2_1_1:93239553-93250448:-|nuORF REV__ENST00000466778.2_1_1:93239553-93250448:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2805786132812 2 534.777274 1067.53999 1.3703 0.00073278 0.62526 0.00033437 1.9955 0.0010672 534.7767121818268 58.79 0.66137 52.715 52.439 53.1 -6.0745 119 36 5 0 0 0 0.48152 1 37889 37889 8.5933 0 1 124370000 + 32195 27418 21309 21720 38005 38005 0.00892572300494976 LGQTLRCRQ 9 Unmodified _LGQTLRCRQ_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7940063476562 2 537.795475 1073.5764 0.19516 0.00010495 -1.359 -0.00073088 -1.1639 -0.00062593 537.7946030732734 62.361 0.39209 62.361 62.219 62.611 0 72 26 3 0 0 0 0.12424 1 34742 34742 30.637 5.2372 1 50678000 32196 5224 21310 21721 38006 38006 0.04255125925533321 LGQTLRCRQ 9 Unmodified _LGQTLRCRQ_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 537.795475 1073.5764 0.19516 0.00010495 -1.359 -0.00073088 -1.1639 -0.00062593 537.7946030732734 62.361 0.39209 62.361 62.219 62.611 0 0.017127 -0.0002205 NaN 30.637 72 26 3 NaN NaN NaN NaN 0 NaN NaN 0 50678000 32197 5224 21310 21721 0.04255125925533321 LGQTLRCRQ 9 Unmodified _LGQTLRCRQ_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.795475 1073.5764 0.41506 0.00022322 -0.72625 -0.00039057 -0.31119 -0.00016736 537.7947154284304 62.813 0.36 62.326 62.162 62.522 -0.48617 -0.017127 0.00046012 NaN 30.637 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 25110000 32198 5224 21310 21721 0.04255125925533321 LGQTNHGSTL 10 Unmodified _LGQTNHGSTL_ 0 0 0 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2636108398438 2 514.261988 1026.50942 -0.19597 -0.00010078 2.281 0.001173 2.085 0.0010723 514.2630396649968 78.552 0.38091 78.066 77.942 78.323 -0.48595 23 15 2 0 0 0 0.6966 1 43067 43067 3.2813 0.39209 1 455570 + 32199 21567 21311 21722 38007 38007 -0.0027720608457002527 LGQTTEWI 8 Unmodified _LGQTTEWI_ 0 0 0 REV__ENSG00000121274|ENST00000561678|TENT4B REV__ENSG00000121274|ENST00000561678|TENT4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2659301757812 2 474.245275 946.475997 -0.080288 -3.8076E-05 0.43366 0.00020566 0.35338 0.00016759 474.2455966266691 52.098 0.53634 52.098 51.953 52.489 0 42 23 3 0 0 0 8.7369 1 28954 28954 19.439 6.9074 1 3055100 + 32200 19284 21312 21723 38008 38008 0.0006179214351504925 LGRCQWIHTTA 11 Unmodified _LGRCQWIHTTA_ 0 0 0 ENST00000479650.5_1_9:140470535-140473334:-|nuORF;ENST00000277540.6_1_9:140470535-140471924:-|nuORF ENST00000479650.5_1_9:140470535-140473334:-|nuORF ENST00000479650.5_1_9:140470535-140473334:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.8893432617188 3 429.220518 1284.63972 0.23724 0.00010183 0.90304 0.0003876 1.1403 0.00048943 429.2207792685988 31.421 0.24652 31.421 31.276 31.523 0 17 11 2 0 0 0 0.3058 1 16340 16340 1.4551 0.49284 1 2693500 32201 14043 21313 21724 38009 38009 0.00879066642755788 LGREVPYSIF 10 Unmodified _LGREVPYSIF_ 0 0 0 REV__ENSG00000184378|ENST00000330368|ACTRT3 REV__ENSG00000184378|ENST00000330368|ACTRT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.818115234375 2 590.821681 1179.62881 1.0258 0.00060606 -1.337 -0.00078993 -0.31122 -0.00018387 590.8209333925438 94.039 0.92574 87.863 87.555 88.481 -6.1757 164 53 4 0 0 0 0.35903 1 62138 62138 24.021 0 1 342760000 + 32202 23417 21314 21725 38010 38010 0.04617987540109425 LGRGYMKNVL 10 Unmodified _LGRGYMKNVL_ 0 0 0 REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF REV__ENST00000466153.5_1_13:103307300-103330663:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8213500976562 2 575.823701 1149.63285 0.14564 8.3862E-05 -2.7355 -0.0015751 -2.5898 -0.0014913 575.8219800467608 53.294 0.24601 53.231 53.115 53.361 -0.063423 17 11 2 0 0 0 0.50944 1 28908 28908 15.847 1.9411 1 2010700 + 32203 20022 21315 21726 38011 38011 0.06401753762202134 LGRHETSI 8 Unmodified _LGRHETSI_ 0 0 0 REV__ENST00000390627.3_3_14:107049081-107049150:-|nuORF REV__ENST00000390627.3_3_14:107049081-107049150:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7486572265625 2 456.748516 911.482479 NaN NaN NaN NaN NaN NaN NaN 21.383 1 21.383 20.883 21.883 0 0 0 0 0.97444 1 10816 10816 2.8892 0 1 + 32204 26368 21316 21727 38012 38012 0.023197300949163946 LGRHILLRPL 10 Unmodified _LGRHILLRPL_ 0 0 0 REV__ENST00000378641.7_2_20:8113010-8113124:+|nuORF REV__ENST00000378641.7_2_20:8113010-8113124:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3899536132812 2 594.3904 1186.76625 NaN NaN NaN NaN NaN NaN NaN 103.8 1 103.75 103.25 104.25 -0.048737 0 0 0 1.0061 1 57642 57642 0 0 1 + 32205 26270 21317 21728 38013 38013 0.18033360930257913 LGRLGLIRF 9 Unmodified _LGRLGLIRF_ 0 0 0 REV__nc|ENSG00000101353|Q9H579-2|MROH8 REV__nc|ENSG00000101353|Q9H579-2|MROH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8383178710938 2 522.837468 1043.66038 NaN NaN NaN NaN NaN NaN NaN 48.746 1 48.703 48.203 49.203 -0.04369 0 0 0 0.7243 1 26314 26314 8.5933 3.3626 1 + 32206 18164 21318 21729 38014 38014 0.14030025084753106 LGRLHQLL 8 Unmodified _LGRLHQLL_ 0 0 0 ENST00000376327.5_1_X:49028379-49028439:+|nuORF ENST00000376327.5_1_X:49028379-49028439:+|nuORF ENST00000376327.5_1_X:49028379-49028439:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.3017883300781 2 475.300719 948.586885 1.2373 0.00058809 -0.50457 -0.00023982 0.73273 0.00034827 475.3005262322646 37.517 0.70837 33.234 32.908 33.616 -4.2835 110 42 4 0 0 0 0.57408 1 21915 21915 28.173 0 1 132170000 32207 12489 21319 21730 38015 38015 0.11053476642291571 LGRPPLGAV 9 Unmodified _LGRPPLGAV_ 0 0 0 REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF REV__ENST00000285383.6_1_7:6895426-6899450:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2747802734375 2 440.27417 878.533787 0.64024 0.00028188 0.53829 0.00023699 1.1785 0.00051887 440.2743832384568 40.44 0.41758 35.911 35.695 36.113 -4.5294 53 26 3 0 0 0 0.30562 1 24145 24145 16.942 0 1 32990000 + 32208 25217 21320 21731 38016 38016 0.08966098859616523 LGRQVAAKAI 10 Unmodified _LGRQVAAKAI_ 0 0 0 ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24;ENST00000491466.5_1_17:38175784-38176226:-|nuORF ENSG00000008838|ENST00000394128|MED24 ENSG00000008838|ENST00000394128|MED24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8242797851562 2 513.824558 1025.63456 0.034179 1.7562E-05 -0.074245 -3.8149E-05 -0.040066 -2.0587E-05 513.8243403528514 41.81 0.26665 41.808 41.701 41.968 -0.0017929 39 12 4 0 0 0 0.6606 1 22452 22452 7.2892 1.0834 1 40662000 32209 396 21321 21732 38017 38017 0.12277130842448969 LGRRGPLGL 9 Unmodified _LGRRGPLGL_ 0 0 0 ENST00000551801.1_1_14:105857872-105861006:+|nuORF;ENST00000548796.1_1_14:105857553-105859601:+|nuORF ENST00000551801.1_1_14:105857872-105861006:+|nuORF ENST00000551801.1_1_14:105857872-105861006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.798583984375 2 469.798343 937.582134 1.1562 0.00054316 -0.26389 -0.00012398 0.89227 0.00041919 469.7983080593697 37.483 0.3643 33.199 32.991 33.355 -4.2835 37 21 2 0 0 0 0.10925 1 22042 22042 32.117 0 1 16887000 32210 15174 21322 21733 38018 38018 0.11084592499514656 LGRTDYLHLQ 10 Unmodified _LGRTDYLHLQ_ 0 0 0 REV__ENSG00000197885|ENST00000425478|NKIRAS1 REV__ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3273315429688 2 608.327662 1214.64077 -0.23029 -0.00014009 0.42082 0.000256 0.19054 0.00011591 608.3280043544302 32.808 0.28731 32.648 32.474 32.762 -0.15918 24 11 3 0 0 0 0.087043 1 17084 17084 49.554 11.379 1 5659800 + 32211 23963 21323 21734 38019 38019 0.04203604283338791 LGRTDYLHLQ 10 Unmodified _LGRTDYLHLQ_ 0 0 0 REV__ENSG00000197885|ENST00000425478|NKIRAS1 REV__ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 608.327662 1214.64077 -1.1156 -0.00067863 -0.77591 -0.00047201 -1.8915 -0.0011506 608.3272442186169 32.74 0.13183 32.74 32.658 32.79 0 0.069842 -0.00083413 NaN 49.554 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 848870 + 32212 23963 21323 21734 0.04203604283338791 LGRTDYLHLQ 10 Unmodified _LGRTDYLHLQ_ 0 0 0 REV__ENSG00000197885|ENST00000425478|NKIRAS1 REV__ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 608.327662 1214.64077 -0.23029 -0.00014009 0.42082 0.000256 0.19054 0.00011591 608.3280043544302 32.808 0.28731 32.648 32.474 32.762 -0.15918 -0.021719 0.00062189 NaN 49.554 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5659800 + 32213 23963 21323 21734 0.04203604283338791 LGRTDYLHLQ 10 Unmodified _LGRTDYLHLQ_ 0 0 0 REV__ENSG00000197885|ENST00000425478|NKIRAS1 REV__ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 608.327662 1214.64077 0.77641 0.00047231 -0.82977 -0.00050477 -0.053365 -3.2463E-05 608.3272158560138 36.905 0.17675 32.622 32.524 32.701 -4.2835 -0.048123 -0.00089966 NaN 49.554 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 5396700 + 32214 23963 21323 21734 0.04203604283338791 LGSAEQFLL 9 Unmodified _LGSAEQFLL_ 0 0 0 ENSG00000134775|ENST00000590592|FHOD3;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2695617675781 2 489.26875 976.522947 0.087633 4.2876E-05 -0.2211 -0.00010818 -0.13347 -6.53E-05 489.2683776385176 69.544 0.28123 69.065 68.9 69.182 -0.47903 16 11 2 0 0 0 0.46577 1 38032 38032 9.3474 0 1 426110 32215 4638 21324 21735 38020 38020 0.03374651694673503 LGSAGVMCKEL 11 Unmodified _LGSAGVMCKEL_ 0 0 0 REV__ENST00000253122.9_1_X:152961590-152961851:+|nuORF REV__ENST00000253122.9_1_X:152961590-152961851:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2501831054688 2 554.280477 1106.5464 0.83116 0.0004607 2.0711 0.001148 2.9022 0.0016087 554.2823481675122 47.574 0.22278 47.222 47.105 47.328 -0.3526 18 10 2 0 0 0 0.28752 1 25550 25550 13.906 1.3745 1 3411400 + 32216 24898 21325 21736 38021 38021 -0.0026099385468114633 LGSAMKDCPY 10 Unmodified _LGSAMKDCPY_ 0 0 0 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7447509765625 2 542.743728 1083.4729 0.49263 0.00026737 -1.4365 -0.00077968 -0.94391 -0.0005123 542.7434071315396 53.463 0.31767 53.463 53.327 53.645 0 45 14 4 0 0 0 0.39779 1 29724 29724 21.747 5.8995 1 13234000 32217 10110 21326 21737 38022 38022 -0.06549542297148037 LGSAMKDCPY 10 Unmodified _LGSAMKDCPY_ 0 0 0 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.743728 1083.4729 0.081519 4.4244E-05 -0.65869 -0.0003575 -0.57717 -0.00031326 542.7434967102489 54.083 0.22032 53.617 53.487 53.707 -0.46664 0.076795 0.00050376 NaN 21.747 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2928400 32218 10110 21326 21737 -0.06549542297148037 LGSGEGLLGL 10 Unmodified _LGSGEGLLGL_ 0 0 0 ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;nc|ENSG00000161847|Q8IY67|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 915.5165405273438 1 915.514573 914.507297 -0.0070869 -6.4882E-06 -0.36848 -0.00033735 -0.37557 -0.00034384 915.514396530905 64.775 0.22938 64.775 64.672 64.901 0 16 9 2 0 0 0 0.31022 1 36119 36119 26.884 2.8631 1 1099600 32219 6811 21327 21738 38023 38023 0.04662365177614447 LGSGLIGAPL 10 Unmodified _LGSGLIGAPL_ 0 0 0 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2733459472656 2 449.273835 896.533118 0.023865 1.0722E-05 -0.10403 -4.6736E-05 -0.080161 -3.6014E-05 449.27374136405797 52.076 0.46867 52.076 51.842 52.311 0 38 20 2 0 0 0 0.063761 1 28716 28716 54.774 7.0249 1 20554000 + 32220 23399 21328 21739 38024 38024 0.08071259419898524 LGSGLIGAPL 10 Unmodified _LGSGLIGAPL_ 0 0 0 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2746276855469 2 449.273835 896.533118 0.38982 0.00017513 0.57856 0.00025993 0.96838 0.00043507 449.27415094725535 58.037 0.56199 52.009 51.804 52.366 -6.0275 64 30 3 0 0 0 0.043729 2 37097 37097;37223 61.357 13.609 1 69132000 + 32221 23399 21328 21739 38025;38026 38025 0.08071259419898524 LGSGRQNDVP 10 Unmodified _LGSGRQNDVP_ 0 0 0 REV__ENSG00000158195|ENST00000618852|WASF2 REV__ENSG00000158195|ENST00000618852|WASF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.2691650390625 2 521.767437 1041.52032 0.7146 0.00037286 -0.3193 -0.0001666 0.3953 0.00020626 521.7676228745913 52.216 0.20173 46.482 46.378 46.58 -5.7345 14 12 2 0 0 0 0.22811 1 32995 32995 10.074 0.72649 1 39566000 + 32222 21421 21329 21740 38027 38027 0.0012219628970342455 LGSITLEGL 9 Unmodified _LGSITLEGL_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7628479003906 2 451.7633 901.512048 NaN NaN NaN NaN NaN NaN NaN 89.652 1 89.15 88.65 89.65 -0.50171 0 0 0 0.82015 1 49013 49013 5.2307 0 1 + 32223 18107 21330 21741 38028 38028 0.057352493203779886 LGSKLIGTG 9 Unmodified _LGSKLIGTG_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2577819824219 2 423.258185 844.501818 -0.54085 -0.00022892 0.58166 0.00024619 0.040815 1.7275E-05 423.2582194157957 78.254 0.21248 77.768 77.608 77.82 -0.48596 15 8 2 0 0 0 0.62242 1 42880 42880 0 0 1 428740 32224 10207 21331 21742 38029 38029 0.07334686385831901 LGSLHGIF 8 Unmodified _LGSLHGIF_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2413330078125 2 422.239796 842.465038 0.26269 0.00011092 0.12506 5.2806E-05 0.38775 0.00016373 422.23986984682034 50.714 0.28096 50.714 50.54 50.821 0 21 15 2 0 0 0 0.65867 1 27942 27942 20.871 0 1 8709900 + 32225 18689 21332 21743 38030 38030 0.037504345598904365 LGSLHGIF 8 Unmodified _LGSLHGIF_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2396850585938 2 422.239796 842.465038 NaN NaN NaN NaN NaN NaN NaN 51.431 1 51.017 50.517 51.517 -0.41351 0 0 0 0.93066 1 27729 27729 14.582 0 1 + 32226 18689 21332 21743 38031 38031 0.037504345598904365 LGSLHGIF 8 Unmodified _LGSLHGIF_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.239796 842.465038 0.26269 0.00011092 0.12506 5.2806E-05 0.38775 0.00016373 422.23986984682034 50.714 0.28096 50.714 50.54 50.821 0 -0.13015 0.00020508 NaN 20.871 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8709900 + 32227 18689 21332 21743 0.037504345598904365 LGSLHGIF 8 Unmodified _LGSLHGIF_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 422.239796 842.465038 -0.10122 -4.274E-05 -0.126 -5.3204E-05 -0.22723 -9.5944E-05 422.2396502179848 51.305 0.2901 50.891 50.718 51.009 -0.41351 0.047552 -6.9366E-06 NaN 20.871 41 14 4 NaN NaN NaN NaN 0 NaN NaN 0 15194000 + 32228 18689 21332 21743 0.037504345598904365 LGSLLISFNLS 11 Unmodified _LGSLLISFNLS_ 0 0 0 ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3 ENSG00000178904|ENST00000392250|DPY19L3 ENSG00000178904|ENST00000392250|DPY19L3 MSMS AL20221201_MKP_PDAC_01 4 388.5612182617188 3 388.560535 1162.65977 NaN NaN NaN NaN NaN NaN NaN 78.649 1 72.473 71.973 72.973 -6.1757 0 0 0 0.76967 1 51494 51494 13.519 5.3631 1 32229 8780 21333 21744 38032 38032 0.08495140854392957 LGSPPQQL 8 Unmodified _LGSPPQQL_ 0 0 0 ENSG00000163623|ENST00000295886|NKX6-1 ENSG00000163623|ENST00000295886|NKX6-1 ENSG00000163623|ENST00000295886|NKX6-1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.3789672851562 1 839.462144 838.454868 0.24925 0.00020923 -0.86092 -0.00072271 -0.61168 -0.00051348 839.461641709411 53.292 0.21357 53.292 53.166 53.38 0 11 8 2 0 0 0 8.7369 1 29519 29519 13.508 0.97634 1 1616700 32230 7030 21334 21745 38033 38033 0.029178268346640834 LGSPRAHVAI 10 Unmodified _LGSPRAHVAI_ 0 0 0 ENST00000369484.7_3_X:154299053-154299095:-|nuORF ENST00000369484.7_3_X:154299053-154299095:-|nuORF ENST00000369484.7_3_X:154299053-154299095:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8036804199219 2 510.801083 1019.58761 0.43402 0.0002217 0.29671 0.00015156 0.73073 0.00037326 510.8011729912954 43.823 0.3307 39.058 38.857 39.188 -4.7648 35 20 2 0 0 0 0.16361 1 26649 26649 38.176 3.2435 1 13011000 32231 12308 21335 21746 38034 38034 0.07860271291315257 LGSPRPRVI 9 Unmodified _LGSPRPRVI_ 0 0 0 ENST00000483554.1_1_17:27043914-27044564:-|nuORF;ENST00000580843.6_2_17:27043073-27045143:-|nuORF;ENST00000353676.9_1_17:27043073-27045236:-|nuORF;nc|ENSG00000109113|P0DI83|RAB34 ENST00000483554.1_1_17:27043914-27044564:-|nuORF ENST00000483554.1_1_17:27043914-27044564:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7604370117188 2 497.811451 993.608348 -0.06131 -3.0521E-05 -0.43136 -0.00021473 -0.49267 -0.00024526 497.8115729094038 32.239 0.35573 32.268 32.058 32.414 0.029743 21 15 2 0 0 0 0.16226 1 16930 16930 26.884 0 1 2895800 32232 12056 21336 21747 38035 38035 0.11128861670999868 LGSQNEVKEEE 11 Unmodified _LGSQNEVKEEE_ 0 0 0 ENSG00000123307|ENST00000242994|NEUROD4 ENSG00000123307|ENST00000242994|NEUROD4 ENSG00000123307|ENST00000242994|NEUROD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2298583984375 3 421.201735 1260.58338 -0.53623 -0.00022586 1.5771 0.00066428 1.0409 0.00043841 421.20262952799163 18.904 0.22592 18.904 18.739 18.965 0 38 19 3 0 0 0 0.30551 1 9459 9459 1.2148 0.51716 1 2256500 32233 3695 21337 21748 38036 38036 -0.036493275035581973 LGSRASPGPAG 11 Unmodified _LGSRASPGPAG_ 0 0 0 REV__ENST00000315127.8_2_15:74967332-74988282:-|nuORF REV__ENST00000315127.8_2_15:74967332-74988282:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7408752441406 2 485.259248 968.503943 NaN NaN NaN NaN NaN NaN NaN 68.151 1 68.151 67.651 68.651 0 0 0 0 0.93933 1 37997 37997 2.9952 0.10602 1 + 32234 25455 21338 21749 38037 38037 0.018431151236200094 LGSSEAHWCSH 11 Unmodified _LGSSEAHWCSH_ 0 0 0 REV__ENST00000575714.5_1_16:4407825-4408182:-|nuORF REV__ENST00000575714.5_1_16:4407825-4408182:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1720275878906 3 405.173345 1212.49821 NaN NaN NaN NaN NaN NaN NaN 40.79 1 40.79 40.29 41.29 0 0 0 0 0.93893 1 21950 21950 1.3296 0.31607 1 + 32235 29009 21339 21750 38038 38038 -0.09954351450369359 LGSTAMMLIY 10 Unmodified _LGSTAMMLIY_ 0 0 0 nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2747192382812 2 550.279946 1098.54534 0.95735 0.00052681 1.2735 0.00070079 2.2309 0.0012276 550.2798037005551 50.044 0.8457 44.505 44.125 44.971 -5.5391 92 54 2 0 0 0 0.24625 1 31547 31547 30.637 1.555 1 45604000 32236 8581 21340 21751 38039 38039 7.917764378362335E-06 LGSVLGLTSL 10 Unmodified _LGSVLGLTSL_ 0 0 0 REV__ENSG00000146409|ENST00000275227|SLC18B1 REV__ENSG00000146409|ENST00000275227|SLC18B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2926940917969 2 480.292225 958.569897 0.59537 0.00028595 -0.21602 -0.00010376 0.37935 0.0001822 480.2921364401291 61.987 0.22849 61.5 61.387 61.615 -0.48764 14 10 2 0 0 0 0.2178 1 33784 33784 32.305 0 1 1141500 + 32237 20831 21341 21752 38040 38040 0.08895511245816579 LGSVTSHDSF 10 Unmodified _LGSVTSHDSF_ 0 0 0 REV__ENST00000397022.7_2_6:26091686-26093021:+|nuORF REV__ENST00000397022.7_2_6:26091686-26093021:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8074340820312 2 525.248546 1048.48254 0.4049 0.00021267 -3.0143 -0.0015833 -2.6094 -0.0013706 525.2498205092386 57.279 0.2957 56.79 56.668 56.964 -0.48974 26 13 3 0 0 0 0.22667 1 31185 31185 15.847 0 1 1179900 + 32238 26522 21342 21753 38041 38041 -0.03976314695773908 LGSWRLNY 8 Unmodified _LGSWRLNY_ 0 0 0 REV__ENSG00000164244|ENST00000296666|PRRC1 REV__ENSG00000164244|ENST00000296666|PRRC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.767578125 2 504.766709 1007.51886 NaN NaN NaN NaN NaN NaN NaN 72.185 1 72.185 71.685 72.685 0 0 0 0 0.97444 1 40196 40196 2.5775 0.27475 1 + 32239 21894 21343 21754 38042 38042 0.015406069916139131 LGSYIGLY 8 Unmodified _LGSYIGLY_ 0 0 0 REV__nc|ENSG00000125257|O15439-4|ABCC4 REV__nc|ENSG00000125257|O15439-4|ABCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2372741699219 2 443.239461 884.46437 -0.19101 -8.4662E-05 -3.2301 -0.0014317 -3.4211 -0.0015164 443.2373283128261 41.584 0.43877 41.584 41.462 41.901 0 35 22 3 0 0 0 0.5284 1 22432 22432 32.117 3.6301 1 19347000 + 32240 19484 21344 21755 38043 38043 0.017515951201858115 LGTASLAQV 9 Unmodified _LGTASLAQV_ 0 0 0 nc|ENSG00000063761|Q86TW2-3|ADCK1;ENSG00000063761|ENST00000238561|ADCK1;nc|ENSG00000063761|Q86TW2|ADCK1 nc|ENSG00000063761|Q86TW2-3|ADCK1 nc|ENSG00000063761|Q86TW2-3|ADCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.4896240234375 1 859.488359 858.481082 0.82047 0.00070518 0.42936 0.00036903 1.2498 0.0010742 859.4887703951448 54.571 0.24983 54.571 54.44 54.689 0 18 10 2 0 0 0 0.087258 1 30284 30284 36.044 0 1 1261500 32241 865 21345 21756 38044 38044 0.04618096006140604 LGTGGILGYL 10 Unmodified _LGTGGILGYL_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2785949707031 2 482.279118 962.543683 -0.45752 -0.00022065 -0.74111 -0.00035742 -1.1986 -0.00057808 482.27882552768 56.11 0.2772 55.624 55.451 55.728 -0.48554 32 13 3 0 0 0 0.092434 1 30404 30404 48.346 0 1 14725000 32242 4539 21346 21757 38045 38045 0.06091242074330694 LGTSHPALAL 10 Unmodified _LGTSHPALAL_ 0 0 0 ENST00000395290.6_1_11:47488999-47489110:-|nuORF ENST00000395290.6_1_11:47488999-47489110:-|nuORF ENST00000395290.6_1_11:47488999-47489110:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.7507629394531 2 490.282192 978.549831 1.0378 0.0005088 0.49718 0.00024376 1.535 0.00075256 490.2824777216951 50.512 0.2605 44.973 44.808 45.068 -5.5391 28 16 2 0 0 0 0.13772 1 31645 31645 20.454 1.1966 1 22717000 32243 12764 21347 21758 38046 38046 0.059697603058339155 LGTTDLLRERF 11 Unmodified _LGTTDLLRERF_ 0 0 0 nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 nc|ENSG00000168077|Q6AZY7-2|SCARA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8663330078125 2 660.867151 1319.71975 0.88973 0.000588 -2.1084 -0.0013934 -1.2187 -0.00080541 660.8660571379035 70.255 0.73802 70.29 69.96 70.698 0.035515 86 35 3 0 0 0 0.54936 1 38734 38734 13.906 2.4113 1 4431200 32244 7716 21348 21759 38047 38047 0.07267831517606282 LGVALTLHLL 10 Unmodified _LGVALTLHLL_ 0 0 0 ENST00000565743.1_1_16:84682580-84682835:+|nuORF ENST00000565743.1_1_16:84682580-84682835:+|nuORF ENST00000565743.1_1_16:84682580-84682835:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 525.7818603515625 2 525.33951 1048.66447 NaN NaN NaN NaN NaN NaN NaN 97.461 1 91.286 90.786 91.786 -6.1757 0 0 0 0.61917 1 64589 64589 20.454 3.5113 1 32245 15410 21349 21760 38048 38048 0.1420806978778728 LGVAQLDSV 9 Unmodified _LGVAQLDSV_ 0 0 0 nc|ENSG00000023909|P48507-2|GCLM;ENSG00000023909|ENST00000370238|GCLM nc|ENSG00000023909|P48507-2|GCLM nc|ENSG00000023909|P48507-2|GCLM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2308959960938 2 451.2531 900.491647 0.61459 0.00027734 -0.40793 -0.00018408 0.20666 9.3257E-05 451.2528188583593 57.914 0.32185 57.914 57.736 58.058 0 23 13 2 0 0 0 0.20528 1 32311 32311 8.5933 0 1 2481800 32246 549 21350 21761 38049 38049 0.037420786605594 LGVDERER 8 Unmodified _LGVDERER_ 0 0 0 REV__ENST00000540163.5_1_11:114271263-114271329:+|nuORF REV__ENST00000540163.5_1_11:114271263-114271329:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2577209472656 2 487.256705 972.498858 -0.4182 -0.00020377 0.36501 0.00017785 -0.053186 -2.5915E-05 487.25713570233376 17.237 0.18015 17.251 17.159 17.339 0.013866 77 51 2 0 0 0 0.76266 1 8553 8553 11.64 0 1 484790 + 32247 28578 21351 21762 38050 38050 0.011508112609931231 LGVGRRGSGL 10 Unmodified _LGVGRRGSGL_ 0 0 0 REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2912902832031 2 486.290882 970.567212 0.2856 0.00013889 0.91039 0.00044272 1.196 0.0005816 486.2911907106885 19.168 0.15917 19.175 19.08 19.24 0.0078487 23 10 3 0 0 0 0.66569 1 9750 9750 6.7232 0 1 1188700 + 32248 28092 21352 21763 38051 38051 0.08075100631526766 LGVLAGLVV 9 Unmodified _LGVLAGLVV_ 0 0 0 ENSG00000049769|ENST00000055335|PPP1R3F;nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F ENSG00000049769|ENST00000055335|PPP1R3F ENSG00000049769|ENST00000055335|PPP1R3F MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.5565185546875 1 840.555316 839.54804 1.0612 0.00089201 0.54927 0.00046169 1.6105 0.0013537 840.555703160371 100.46 0.10155 94.28 94.228 94.33 -6.1757 7 5 2 0 0 0 0.047696 1 67181 67181 45.75 0 1 11069000 32249 715 21353 21764 38052 38052 0.12184751287907147 LGVQVAQPG 9 Unmodified _LGVQVAQPG_ 0 0 0 REV__nc|ENSG00000114270|Q02388-2|COL7A1 REV__nc|ENSG00000114270|Q02388-2|COL7A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7485656738281 2 434.747985 867.481417 NaN NaN NaN NaN NaN NaN NaN 50.179 1 50.179 49.679 50.679 0 0 0 0 0.6032 1 27652 27652 12.532 0 1 + 32250 18909 21354 21765 38053 38053 0.04237515726003949 LGVRFHRLIY 10 Unmodified _LGVRFHRLIY_ 0 0 0 ENSG00000070367|ENST00000621441|EXOC5;ENST00000554011.5_1_14:57675329-57698504:-|nuORF ENSG00000070367|ENST00000621441|EXOC5 ENSG00000070367|ENST00000621441|EXOC5 MSMS AL20221201_MKP_PDAC_01 4 425.2566223144531 3 425.25578 1272.74551 NaN NaN NaN NaN NaN NaN NaN 31.839 1 28.143 27.643 28.643 -3.6958 0 0 0 0.83398 1 18069 18069 6.1918 0.40842 1 32251 1025 21355 21766 38054 38054 0.12004770550561261 LGVSGLVSH 9 Unmodified _LGVSGLVSH_ 0 0 0 REV__ENST00000506274.1_1_4:88140723-88140870:-|nuORF REV__ENST00000506274.1_1_4:88140723-88140870:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.7485961914062 2 434.747985 867.481417 NaN NaN NaN NaN NaN NaN NaN 26.649 1 23.698 23.198 24.198 -2.9511 0 0 0 0.020354 1 14708 14708 77.984 11.528 1 + 32252 28086 21356 21767 38055 38055 0.04237515726003949 LGVSKVTQV 9 Unmodified _LGVSKVTQV_ 0 0 0 nc|ENSG00000158560|O14576-4|DYNC1I1;nc|ENSG00000158560|O14576-3|DYNC1I1;nc|ENSG00000158560|O14576-5|DYNC1I1;ENSG00000158560|ENST00000447467|DYNC1I1;nc|ENSG00000158560|O14576|DYNC1I1 nc|ENSG00000158560|O14576-4|DYNC1I1 nc|ENSG00000158560|O14576-4|DYNC1I1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7861633300781 2 465.784567 929.554582 0.55629 0.00025911 0.87341 0.00040682 1.4297 0.00066593 465.7852606374085 55.827 0.33668 49.906 49.721 50.058 -5.9211 34 19 2 0 0 0 0.10734 1 35656 35656 32.305 6.9062 1 17863000 32253 6597 21357 21768 38056 38056 0.08698644448611503 LGVTGGVLVT 10 Unmodified _LGVTGGVLVT_ 0 0 0 REV__ENSG00000152580|ENST00000282466|IGSF10 REV__ENSG00000152580|ENST00000282466|IGSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2792663574219 2 458.279118 914.543683 0.44695 0.00020483 0.16876 7.7337E-05 0.61571 0.00028217 458.27911739839277 45.148 0.46838 40.296 40.098 40.567 -4.852 73 31 3 0 0 0 0.1028 1 27593 27593 46.021 2.2486 1 50431000 + 32254 21126 21358 21769 38057 38057 0.08299242074338053 LGVTTWTLKL 10 Unmodified _LGVTTWTLKL_ 0 0 0 nc|nan|Q6IPW1-2|C11orf71 nc|nan|Q6IPW1-2|C11orf71 nc|nan|Q6IPW1-2|C11orf71 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.7742919921875 2 566.342249 1130.66995 1.0093 0.0005716 0.43465 0.00024616 1.4439 0.00081776 566.3424015091939 59.549 0.22851 53.435 53.286 53.515 -6.1147 16 11 2 0 0 0 0.23227 1 38243 38243 3.5965 0 1 13990000 32255 16664 21359 21770 38058 38058 0.1098374857961062 LGVVSNLSL 9 Unmodified _LGVVSNLSL_ 0 0 0 ENST00000493246.5_2_7:7681157-7712940:+|nuORF ENST00000493246.5_2_7:7681157-7712940:+|nuORF ENST00000493246.5_2_7:7681157-7712940:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2713928222656 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 75.695 1 75.695 75.195 76.195 0 0 0 0 0.7243 1 42100 42100 8.5933 0 1 32256 14313 21360 21771 38059 38059 0.07378955557294375 LGWAGLPAA 9 Unmodified _LGWAGLPAA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2396545410156 2 428.239796 854.465038 0.65536 0.00028065 -0.011764 -5.038E-06 0.6436 0.00027562 428.2396417806459 46.061 0.19168 46.061 45.957 46.149 0 13 8 2 0 0 0 0.3554 1 25173 25173 14.582 5.2343 1 1642200 32257 16311 21361 21772 38060 38060 0.031984345598857544 LGWAGLPAA 9 Unmodified _LGWAGLPAA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 428.239796 854.465038 0.65536 0.00028065 -0.011764 -5.038E-06 0.6436 0.00027562 428.2396417806459 46.061 0.19168 46.061 45.957 46.149 0 0.097427 0.00050924 NaN 14.582 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1642200 32258 16311 21361 21772 0.031984345598857544 LGWAGLPAA 9 Unmodified _LGWAGLPAA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 428.239796 854.465038 0.50194 0.00021495 -1.4036 -0.00060106 -0.90162 -0.00038611 428.23920445639357 46.361 0.23094 46.025 45.881 46.112 -0.33664 0.060843 -0.0006828 NaN 14.582 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9720600 32259 16311 21361 21772 0.031984345598857544 LGWAGLPAA 9 Unmodified _LGWAGLPAA_ 0 0 0 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 nc|ENSG00000159650|Q96N76-2|UROC1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 428.239796 854.465038 0.90307 0.00038673 0.71664 0.0003069 1.6197 0.00069362 428.24021752174946 51.454 0.23819 45.805 45.722 45.96 -5.649 -0.15827 0.0011331 NaN 14.582 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 27229000 32260 16311 21361 21772 0.031984345598857544 LGWAPAPLL 9 Unmodified _LGWAPAPLL_ 0 0 0 REV__ENST00000558663.5_1_15:99768880-99791424:-|nuORF REV__ENST00000558663.5_1_15:99768880-99791424:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.2776184082031 2 469.278921 936.543289 NaN NaN NaN NaN NaN NaN NaN 50.456 1 44.917 44.417 45.417 -5.5391 0 0 0 0.24185 1 31657 31657 28.173 6.4266 1 + 32261 28805 21362 21773 38061 38061 0.072478671451222 LGWATPLFGLF 11 Unmodified _LGWATPLFGLF_ 0 0 0 REV__ENST00000554803.5_3_14:35452198-35465902:+|nuORF REV__ENST00000554803.5_3_14:35452198-35465902:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3368530273438 2 611.336967 1220.65938 0.47181 0.00028844 0.18997 0.00011613 0.66178 0.00040457 611.3369895298924 75.024 0.9594 75.07 74.387 75.346 0.045959 94 44 3 0 0 0 0.63851 1 41168 41168 9.3831 2.66 1 4682900 + 32262 28759 21363 21774 38062 38062 0.05787765925174426 LGWIFSGVL 9 Unmodified _LGWIFSGVL_ 0 0 0 REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2845458984375 2 496.284203 990.553853 0.95148 0.0004722 -0.2384 -0.00011832 0.71307 0.00035389 496.28410758946245 50.638 0.17867 50.584 50.51 50.688 -0.053871 14 8 2 0 0 0 0.18465 1 27402 27402 24.674 3.1369 1 1505700 + 32263 22285 21364 21775 38063 38063 0.058198497995590515 LGWIHAHL 8 Unmodified _LGWIHAHL_ 0 0 0 REV__ENST00000527065.1_1_11:104915521-104915599:-|nuORF REV__ENST00000527065.1_1_11:104915521-104915599:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7664184570312 2 473.766512 945.518471 NaN NaN NaN NaN NaN NaN NaN 95.644 1 95.276 94.776 95.776 -0.36814 0 0 0 0.97444 1 52239 52239 0 0 1 + 32264 28381 21365 21776 38064 38064 0.04353232062396728 LGWIPWFGGR 10 Unmodified _LGWIPWFGGR_ 0 0 0 ENST00000460829.5_1_3:184046592-184046874:+|nuORF ENST00000460829.5_1_3:184046592-184046874:+|nuORF ENST00000460829.5_1_3:184046592-184046874:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8822021484375 3 396.881943 1187.624 NaN NaN NaN NaN NaN NaN NaN 21.458 1 21.458 20.958 21.958 0 0 0 0 0.99091 1 10859 10859 0.69767 0 1 32265 13646 21366 21777 38065 38065 0.03769148188007421 LGWYCFRR 8 Unmodified _LGWYCFRR_ 0 0 0 ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5183410644531 3 367.520128 1099.53855 NaN NaN NaN NaN NaN NaN NaN 53.648 1 53.648 53.148 54.148 0 0 0 0 0.97348 1 29750 29750 3.9444 0 1 32266 15731 21367 21778 38066 38066 -0.007233402692918389 LGYELGIY 8 Unmodified _LGYELGIY_ 0 0 0 REV__nc|ENSG00000130177|Q13042-4|CDC16 REV__nc|ENSG00000130177|Q13042-4|CDC16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2286071777344 2 464.244744 926.474934 0.81844 0.00037996 -0.81448 -0.00037812 0.0039592 1.838E-06 464.2453172652829 57.033 0.39082 57.033 56.786 57.177 0 33 16 3 0 0 0 8.7369 1 31807 31807 6.3541 2.4097 1 1318700 + 32267 19702 21368 21779 38067 38067 0.008755777746273452 LHAAATVI 8 Unmodified _LHAAATVI_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MSMS AL20221201_MKP_PDAC_01 4 398.240478515625 2 398.239796 794.465038 NaN NaN NaN NaN NaN NaN NaN 46.227 1 41.272 40.772 41.772 -4.9549 0 0 0 0.88073 1 28511 28511 19.439 4.8573 1 32268 10932 21369 21780 38068 38068 0.059584345598864275 LHAALLPP 8 Unmodified _LHAALLPP_ 0 0 0 REV__ENST00000459704.6_1_20:61593743-61595647:+|nuORF REV__ENST00000459704.6_1_20:61593743-61595647:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.258056640625 2 416.257988 830.501424 NaN NaN NaN NaN NaN NaN NaN 108.08 1 101.9 101.4 102.4 -6.1757 0 0 0 0.97444 1 72247 72247 0.79363 0 1 + 32269 27280 21370 21781 38069 38069 0.07939311456607356 LHADHRGTF 9 Unmodified _LHADHRGTF_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MSMS AL20221201_MKP_PDAC_01 4 527.2633056640625 2 527.264865 1052.51518 NaN NaN NaN NaN NaN NaN NaN 77.097 1 70.921 70.421 71.421 -6.1757 0 0 0 0.6032 1 50422 50422 12.532 0 1 + 32270 17737 21371 21782 38070 38070 -0.008980627822666065 LHAEKVTKQWI 11 Unmodified _LHAEKVTKQWI_ 0 0 0 REV__ENST00000479590.1_1_3:186271391-186272251:-|nuORF REV__ENST00000479590.1_1_3:186271391-186272251:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.5942993164062 3 451.59435 1351.76122 NaN NaN NaN NaN NaN NaN NaN 98.883 1 92.707 92.207 93.207 -6.1757 0 0 0 0.88602 1 65689 65689 7.9454 0 1 + 32271 18892 21372 21783 38071 38071 0.0994101227693136 LHAEPYLL 8 Unmodified _LHAEPYLL_ 0 0 0 ENSG00000158286|ENST00000377939|RNF207 ENSG00000158286|ENST00000377939|RNF207 ENSG00000158286|ENST00000377939|RNF207 MSMS AL20221201_MKP_PDAC_01 4 478.2509155273438 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 80.252 1 74.077 73.577 74.577 -6.1757 0 0 0 0.9249 1 52644 52644 15.768 1.1865 1 32272 6575 21373 21784 38072 38072 0.0383897290286086 LHAFAPGCVL 10 Unmodified _LHAFAPGCVL_ 0 0 0 REV__ENST00000460320.1_1_9:131078140-131084687:-|nuORF REV__ENST00000460320.1_1_9:131078140-131084687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.77392578125 2 514.273312 1026.53207 0.7799 0.00040108 3.2589 0.001676 4.0388 0.0020771 514.7755211875593 50.253 0.36524 49.86 49.627 49.992 -0.3923 48 17 4 0 0 0 0.57332 1 27007 27007 12.532 1.4171 1 9571300 + 32273 22183 21374 21785 38073 38073 0.019867217793489544 LHAHATHI 8 Unmodified _LHAHATHI_ 0 0 0 ENST00000489381.1_1_7:110303660-110304933:-|nuORF;ENSG00000184903|ENST00000405709|IMMP2L ENST00000489381.1_1_7:110303660-110304933:-|nuORF ENST00000489381.1_1_7:110303660-110304933:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2454528808594 2 450.245944 898.477334 0.39592 0.00017826 -0.64684 -0.00029124 -0.25092 -0.00011298 450.2455044778312 35.277 0.18909 35.304 35.164 35.353 0.027405 16 8 2 0 0 0 0.37649 1 18611 18611 46.921 0 1 4763600 32274 9300 21375 21786 38074 38074 0.02403471022944359 LHAHATHI 8 Unmodified _LHAHATHI_ 0 0 0 ENST00000489381.1_1_7:110303660-110304933:-|nuORF;ENSG00000184903|ENST00000405709|IMMP2L ENST00000489381.1_1_7:110303660-110304933:-|nuORF ENST00000489381.1_1_7:110303660-110304933:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2462463378906 2 450.245944 898.477334 1.0186 0.00045861 0.73073 0.00032901 1.7493 0.00078762 450.2463629416729 39.449 0.2667 34.999 34.825 35.091 -4.4509 26 15 2 0 0 0 0.46494 1 23375 23375 38.151 0 1 10264000 32275 9300 21375 21786 38075 38075 0.02403471022944359 LHAHKLFH 8 Unmodified _LHAHKLFH_ 0 0 0 REV__nc|ENSG00000170983|Q96KT6|LINC00208 REV__nc|ENSG00000170983|Q96KT6|LINC00208 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2655944824219 2 501.785236 1001.55592 0.26603 0.00013349 0.44401 0.0002228 0.71004 0.00035629 501.78580856434024 51.913 0.14665 51.854 51.792 51.939 -0.058914 11 6 2 0 0 0 8.7369 1 28139 28139 11.114 0.93107 1 521240 + 32276 29775 21376 21787 38076 38076 0.05520323328028098 LHAIAPVY 8 Unmodified _LHAIAPVY_ 0 0 0 REV__ENSG00000106066|ENST00000265394|CPVL REV__ENSG00000106066|ENST00000265394|CPVL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2545166015625 2 442.255446 882.496338 NaN NaN NaN NaN NaN NaN NaN 60.061 1 59.57 59.07 60.07 -0.49079 0 0 0 0.9185 1 32694 32694 17.087 0 1 + 32277 18485 21377 21788 38077 38077 0.05039007593995848 LHAKCQLL 8 Unmodified _LHAKCQLL_ 0 0 0 REV__nc|ENSG00000167634|Q8WX94|NLRP7 REV__nc|ENSG00000167634|Q8WX94|NLRP7 MSMS AL20221201_MKP_PDAC_01 4 463.2683715820312 2 463.26803 924.521507 NaN NaN NaN NaN NaN NaN NaN 97.748 1 91.573 91.073 92.073 -6.1757 0 0 0 0.95201 1 64782 64782 10.183 0 1 + 32278 22231 21378 21789 38078 38078 0.05622739124930831 LHALGFSG 8 Unmodified _LHALGFSG_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 801.423583984375 1 801.425365 800.418088 -0.4169 -0.00033412 0.58346 0.0004676 0.16656 0.00013348 801.4258236306763 60.51 0.30161 60.02 59.847 60.148 -0.48932 21 14 2 0 0 0 0.65867 1 32920 32920 20.871 6.2895 1 4310900 32279 10955 21379 21790 38079 38079 0.009895750087707711 LHANIQLNGF 10 Unmodified _LHANIQLNGF_ 0 0 0 REV__nc|ENSG00000142731|O00444-3|PLK4 REV__nc|ENSG00000142731|O00444-3|PLK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2098388671875 3 376.204974 1125.59309 -0.25419 -9.5629E-05 0.80083 0.00030127 0.54663 0.00020565 376.20477582570436 31.825 0.52425 31.855 31.67 32.195 0.030106 117 23 7 0 0 0 0.65502 1 16842 16842 4.1895 0.31317 1 368900000 + 32280 20591 21380 21791 38080 38080 0.035319500831292316 LHAQGTPP 8 Unmodified _LHAQGTPP_ 0 0 0 nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF nc|ENSG00000198522|Q9HCN4-4|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF nc|ENSG00000198522|Q9HCN4-4|GPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 820.4331665039062 1 820.431178 819.423902 0.2208 0.00018115 0.65625 0.0005384 0.87705 0.00071956 820.4318693698552 39.096 0.23207 39.096 38.97 39.202 0 15 10 2 0 0 0 0.64853 1 20889 20889 21.747 0 1 1826700 32281 10102;13657 21381 21792 38081 38081 0.00696673520440072 LHASFPVYDL 10 Unmodified _LHASFPVYDL_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MSMS AL20221201_MKP_PDAC_01 4 581.2958984375 2 581.300581 1160.58661 NaN NaN NaN NaN NaN NaN NaN 39.389 1 34.939 34.439 35.439 -4.4509 0 0 0 0.3465 1 23373 23373 34.402 5.3201 1 32282 7271 21382 21793 38082 38082 0.012740121317847297 LHCLPGPP 8 Unmodified _LHCLPGPP_ 0 0 0 ENST00000328879.8_1_22:20812284-20819276:-|nuORF ENST00000328879.8_1_22:20812284-20819276:-|nuORF ENST00000328879.8_1_22:20812284-20819276:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.900390625 2 417.220549 832.426544 NaN NaN NaN NaN NaN NaN NaN 28.734 1 28.763 28.263 29.263 0.029564 0 0 0 0.97444 1 14968 14968 0.79363 0 1 32283 11838 21383 21794 38083 38083 0.003628056537422708 LHCLSPALAL 10 Unmodified _LHCLSPALAL_ 0 0 0 REV__ENST00000495882.1_1_7:99764639-99764801:-|nuORF REV__ENST00000495882.1_1_7:99764639-99764801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2927856445312 2 519.294245 1036.57394 1.262 0.00065536 -2.1957 -0.0011402 -0.93372 -0.00048487 519.2920557619774 64.705 0.63754 58.529 58.186 58.823 -6.1757 116 35 4 0 0 0 0.2178 1 41896 41896 32.305 1.0371 1 97199000 + 32284 27956 21384 21795 38084 38084 0.057112774678671485 LHCRNSHAEF 10 Unmodified _LHCRNSHAEF_ 0 0 0 ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1 ENST00000521973.5_1_8:125516164-125531109:-|nuORF ENST00000521973.5_1_8:125516164-125531109:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2816162109375 2 607.280189 1212.54582 0.60431 0.00036698 0.98844 0.00060026 1.5927 0.00096724 607.2808102413989 59.54 0.59412 53.426 53.041 53.635 -6.1147 79 32 4 0 0 0 0.50362 1 38340 38340 16.149 0 1 77879000 32285 5878 21385 21796 38085 38085 -0.05194652459522331 LHDDMESQP 9 Unmodified _LHDDMESQP_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-4|FN1;ENST00000492816.6_1_2:216245477-216245942:-|nuORF ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8660583496094 3 357.818568 1070.43387 0.85434 0.0003057 2.8204 0.0010092 3.6747 0.0013149 357.8206145344194 42.804 0.24537 42.804 42.644 42.889 0 18 12 2 0 0 0 0.21367 1 23144 23144 2.7352 0 1 852120 32286 3120 21386 21797 38086 38086 -0.09852551327162473 LHDLTEYEQ 9 Unmodified _LHDLTEYEQ_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1801147460938 3 383.180383 1146.51932 0.60581 0.00023214 -0.5647 -0.00021638 0.041112 1.5753E-05 383.18036208879164 68.145 0.57609 67.663 67.432 68.008 -0.48218 98 26 6 0 0 0 0.54444 2 37177 37177;37282 2.7352 0 1 99482000 + 32287 21838 21387 21798 38087;38088 38087 -0.04808062869847163 LHDPLFFY 8 Unmodified _LHDPLFFY_ 0 0 0 REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.1806945800781 3 351.179766 1050.51747 NaN NaN NaN NaN NaN NaN NaN 78.491 1 72.316 71.816 72.816 -6.1757 0 0 0 0.97444 1 51377 51377 1.8442 0 1 + 32288 28704 21388 21799 38089 38089 -0.005770270971424907 LHDQLLYCCA 10 Unmodified _LHDQLLYCCA_ 0 0 0 REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF REV__ENST00000462410.5_1_1:211533229-211533703:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.297607421875 2 589.770277 1177.526 -0.0039104 -2.3062E-06 -3.8188 -0.0022522 -3.8227 -0.0022545 589.7683124911331 56.607 0.18685 56.607 56.518 56.705 0 9 7 2 0 0 0 0.23489 1 31525 31525 8.7454 3.0136 1 825970 + 32289 27338 21389 21800 38090 38090 -0.05566164514470984 LHDRQRVLH 9 Unmodified _LHDRQRVLH_ 0 0 0 nc|ENSG00000162576|Q9BRK3-3|MXRA8;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8 nc|ENSG00000162576|Q9BRK3-3|MXRA8 nc|ENSG00000162576|Q9BRK3-3|MXRA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8912048339844 3 391.891501 1172.65267 -0.13989 -5.4822E-05 -1.8149 -0.00071124 -1.9548 -0.00076606 391.8907579305062 37.763 0.33197 37.78 37.673 38.005 0.01704 39 15 3 0 0 0 0.14602 1 20044 20044 26.268 0 1 5696400 32290 6875 21390 21801 38091 38091 0.07325265817189575 LHEALDQCMT 10 Unmodified _LHEALDQCMT_ 0 0 0 ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A;nc|ENSG00000085831|Q5SRH9-3|TTC39A ENSG00000085831|ENST00000680483|TTC39A ENSG00000085831|ENST00000680483|TTC39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7576904296875 2 580.757366 1159.50018 -0.016236 -9.4292E-06 -0.6271 -0.00036419 -0.64334 -0.00037362 580.7572921273627 31.665 0.41814 31.665 31.482 31.9 0 81 20 6 0 0 0 0.50362 1 16541 16541 16.149 0 1 94220000 32291 1419 21391 21802 38092 38092 -0.07319058756775121 LHEALKLL 8 Unmodified _LHEALKLL_ 0 0 0 ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1;ENST00000492964.1_1_2:175664846-175666604:-|nuORF;nc|ENSG00000128656|P15882-2|CHN1 ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-2|CHN1 nc|ENSG00000128656|P15882-2|CHN1 MSMS AL20221201_MKP_PDAC_01 4 468.7964172363281 2 468.797478 935.580402 NaN NaN NaN NaN NaN NaN NaN 106.58 1 100.4 99.9 100.9 -6.1757 0 0 0 0.97444 1 71333 71333 0.69038 0 1 32292 4083;16180 21392 21803 38093 38093 0.11003538690886217 LHEDIYVLHE 10 Unmodified _LHEDIYVLHE_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.5487365722656 3 423.215427 1266.62445 -0.32103 -0.00013586 -2.4791 -0.0010492 -2.8002 -0.0011851 423.5488943578139 23.263 0.23955 23.263 23.107 23.347 0 14 11 2 0 0 0 0.70895 1 11864 11864 1.9064 0 1 403730 32293 1581 21393 21804 38094 38094 0.0018047832659249252 LHEEEALPL 9 Unmodified _LHEEEALPL_ 0 0 0 ENST00000504557.1_1_12:54388684-54396343:+|nuORF ENST00000504557.1_1_12:54388684-54396343:+|nuORF ENST00000504557.1_1_12:54388684-54396343:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.250732421875 2 525.776939 1049.53933 0.12238 6.4346E-05 -2.7503 -0.001446 -2.6279 -0.0013817 525.774947115031 41.818 0.23059 41.818 41.709 41.94 0 17 10 2 0 0 0 0.18118 1 22559 22559 12.532 0 1 3239600 32294 14498 21394 21805 38095 38095 0.016537328607682866 LHEEEDEHSC 10 Unmodified _LHEEEDEHSC_ 0 0 0 RNF157|p.V443M|1|0.13|ENSG00000141576|chr17:76158479-76158479|C/T|missense_variant;ENST00000592869.1_1_17:74152379-74154596:-|nuORF;nc|ENSG00000141576|Q96PX1-2|RNF157;ENSG00000141576|ENST00000269391|RNF157 RNF157|p.V443M|1|0.13|ENSG00000141576|chr17:76158479-76158479|C/T|missense_variant RNF157|p.V443M|1|0.13|ENSG00000141576|chr17:76158479-76158479|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8244323730469 3 409.82427 1226.45098 -0.8369 -0.00034298 1.184 0.00048523 0.3471 0.00014225 409.82488016747334 55.542 0.20264 55.542 55.389 55.592 0 14 8 3 0 0 0 0.69064 1 30854 30854 1.9064 0 1 1821800 32295 5357 21395 21806 38096 38096 -0.15318675512025948 LHEEEKSY 8 Unmodified _LHEEEKSY_ 0 0 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7423706054688 2 517.743096 1033.47164 0.27982 0.00014488 -2.0142 -0.0010429 -1.7344 -0.00089799 517.7421702440639 67.117 0.29663 66.635 66.378 66.674 -0.48267 24 13 3 0 0 0 0.58902 1 36634 36634 26.884 0 1 4648000 32296 2885 21396 21807 38097 38097 -0.04375717070047358 LHEFGFLE 8 Unmodified _LHEFGFLE_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2456665039062 2 496.247818 990.481082 NaN NaN NaN NaN NaN NaN NaN 78.401 1 77.915 77.415 78.415 -0.48596 0 0 0 0.93066 1 42940 42940 14.582 3.7578 1 32297 8860 21397 21808 38098 38098 -0.014539039938540554 LHEFKPNV 8 Unmodified _LHEFKPNV_ 0 0 0 REV__ENSG00000163932|ENST00000330452|PRKCD REV__ENSG00000163932|ENST00000330452|PRKCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7720947265625 2 492.269084 982.523616 0.59629 0.00029354 -1.0636 -0.00052359 -0.46734 -0.00023006 492.2684399903209 44.636 0.35283 39.784 39.582 39.935 -4.852 47 28 2 0 0 0 0.65867 1 27186 27186 20.871 5.024 1 18858000 + 32298 21835 21398 21809 38099 38099 0.03165491134382137 LHEFKPNV 8 Unmodified _LHEFKPNV_ 0 0 0 REV__ENSG00000163932|ENST00000330452|PRKCD REV__ENSG00000163932|ENST00000330452|PRKCD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.7720947265625 2 492.269084 982.523616 0.59629 0.00029354 -1.0636 -0.00052359 -0.46734 -0.00023006 492.2684399903209 44.636 0.35283 39.784 39.582 39.935 -4.852 47 28 2 0 0 0 8.7369 1 27186 27186 20.871 20.871 1 18858000 + 32299 21835 21398 21809 38100 38100 0.03165491134382137 LHEFLREAEDL 11 Unmodified _LHEFLREAEDL_ 0 0 0 SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5 SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant;ENSG00000137877|ENST00000320955|SPTBN5 SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 686.34814453125 2 686.348791 1370.68303 NaN NaN NaN NaN NaN NaN NaN 101.74 1 95.565 95.065 96.065 -6.1757 0 0 0 0.51453 1 68289 68289 24.021 7.8715 1 32300 30174;4987 21399 21810 38101 38101 0.012515349010527643 LHEIHDPQHLE 11 Unmodified _LHEIHDPQHLE_ 0 0 0 nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644 nc|ENSG00000122482|Q9H582-2|ZNF644 nc|ENSG00000122482|Q9H582-2|ZNF644 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2314758300781 3 456.561597 1366.66296 1.5102 0.0006895 -0.66642 -0.00030426 0.84378 0.00038524 456.5615127195864 49.986 0.46655 49.937 49.703 50.169 -0.048828 78 22 5 0 0 0 0.73115 1 27088 27088 0.45452 0 1 3122400 32301 3640 21400 21811 38102 38102 -0.005702160388864286 LHELRELERQN 11 Unmodified _LHELRELERQN_ 0 0 0 nc|ENSG00000196220|O43295-2|SRGAP3;ENSG00000196220|ENST00000383836|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 718.8848266601562 2 718.883864 1435.75317 1.1118 0.00079926 -0.91398 -0.00065705 0.19782 0.00014221 718.8828646236221 96.722 0.18539 90.546 90.453 90.638 -6.1757 16 10 2 0 0 0 0.5551 1 64144 64144 13.615 2.1202 1 10831000 32302 9780 21401 21812 38103 38103 0.05272833289495793 LHELRQRW 8 Unmodified _LHELRQRW_ 0 0 0 REV__ENSG00000126001|ENST00000397527|CEP250 REV__ENSG00000126001|ENST00000397527|CEP250 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8820190429688 3 379.880713 1136.62031 NaN NaN NaN NaN NaN NaN NaN 18.763 1 18.786 18.286 19.286 0.023106 0 0 0 0.97444 1 9431 9431 1.6526 0 1 + 32303 19536 21402 21813 38104 38104 0.057464784141757264 LHELTEKK 8 Unmodified _LHELTEKK_ 0 0 0 REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.2573547363281 2 499.287474 996.560395 0.46875 0.00023404 -0.45932 -0.00022933 0.0094276 4.7071E-06 499.28769928731145 45.319 0.30104 40.365 40.254 40.555 -4.9549 31 20 2 0 0 0 8.7369 1 27879 27879 13.508 3.3245 1 17083000 + 32304 28215 21403 21814 38105 38105 0.06197742960284813 LHENNVSRSL 10 Unmodified _LHENNVSRSL_ 0 0 0 nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1 nc|ENSG00000125686|Q15648-3|MED1 nc|ENSG00000125686|Q15648-3|MED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8076782226562 2 584.807094 1167.59963 0.38601 0.00022574 0.41017 0.00023987 0.79619 0.00046562 584.8073800768427 85.882 0.36061 85.381 85.185 85.546 -0.5015 25 14 2 0 0 0 0.6606 1 46955 46955 7.2892 1.5574 1 2343400 32305 3870 21404 21815 38106 38106 0.022538432438750533 LHESSPLELF 10 Unmodified _LHESSPLELF_ 0 0 0 REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.3030395507812 2 586.303321 1170.59209 -0.73445 -0.00043061 0.88045 0.00051621 0.146 8.5601E-05 586.3032460195974 77.497 0.32143 77.015 76.868 77.189 -0.4826 40 15 3 0 0 0 0.52888 1 42495 42495 14.838 7.549 1 6848200 + 32306 24639 21405 21816 38107 38107 0.013616909235679486 LHEVEEIL 8 Unmodified _LHEVEEIL_ 0 0 0 ENST00000297163.3_1_5:135469217-135469343:-|nuORF ENST00000297163.3_1_5:135469217-135469343:-|nuORF ENST00000297163.3_1_5:135469217-135469343:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2664794921875 2 491.266207 980.517862 NaN NaN NaN NaN NaN NaN NaN 49.704 1 49.311 48.811 49.811 -0.3923 0 0 0 0.70013 1 26736 26736 28.173 0 1 32307 11521 21406 21817 38108 38108 0.026823478320466165 LHEVHHDQL 9 Unmodified _LHEVHHDQL_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5248718261719 3 376.524595 1126.55196 0.093063 3.5041E-05 0.044406 1.672E-05 0.13747 5.1761E-05 376.524743403056 20.26 0.15767 20.271 20.168 20.326 0.010551 12 8 2 0 0 0 0.55144 1 10323 10323 2.4985 0.21571 1 356670 32308 6846 21407 21818 38109 38109 -0.00625810956330497 LHFEPSWR 8 Unmodified _LHFEPSWR_ 0 0 0 REV__nc|ENSG00000049246|P56645|PER3 REV__nc|ENSG00000049246|P56645|PER3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.787841796875 2 536.272158 1070.52976 -0.22059 -0.00011829 -2.8903 -0.00155 -3.1109 -0.0016683 536.2706351478998 78.558 0.24182 78.072 77.971 78.213 -0.48596 28 9 4 0 0 0 8.7369 1 43087 43087 20.871 2.7362 1 5014800 + 32309 17247 21408 21819 38110 38110 -0.002679906340972593 LHFFEDYF 8 Unmodified _LHFFEDYF_ 0 0 0 ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3 ENSG00000172421|ENST00000305286|EFCAB3 ENSG00000172421|ENST00000305286|EFCAB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.291748046875 2 559.2531 1116.49165 0.31312 0.00017511 -3.3814 -0.0018911 -3.0683 -0.0017159 559.2506698661025 31.608 0.48367 31.491 31.42 31.904 -0.11677 21 19 2 0 0 0 8.7369 1 16503 16503 2.5775 0 1 2015400 32310 8215 21409 21820 38111 38111 -0.06193921339422559 LHFFSADETY 10 Unmodified _LHFFSADETY_ 0 0 0 REV__ENST00000394457.7_2_2:61415032-61415098:+|nuORF REV__ENST00000394457.7_2_2:61415032-61415098:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8546447753906 3 410.520628 1228.54005 -0.045908 -1.8846E-05 -0.088347 -3.6268E-05 -0.13425 -5.5114E-05 410.8547508564694 37.708 0.22172 37.437 37.303 37.525 -0.27133 15 9 3 0 0 0 0.70895 1 19828 19828 1.9064 0.31409 1 2467100 + 32311 26445 21410 21821 38112 38112 -0.06507472490170585 LHFGAANLAL 10 Unmodified _LHFGAANLAL_ 0 0 0 REV__ENSG00000182472|ENST00000328867|CAPN12 REV__ENSG00000182472|ENST00000328867|CAPN12 MSMS AL20221201_MKP_PDAC_01 4 513.7907104492188 2 513.790184 1025.56581 NaN NaN NaN NaN NaN NaN NaN 60.759 1 54.611 54.111 55.111 -6.1478 0 0 0 0.24983 1 39103 39103 39.957 0 1 + 32312 23270 21411 21822 38113 38113 0.05405466542742943 LHFGEPKTWY 10 Unmodified _LHFGEPKTWY_ 0 0 0 ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E ENSG00000255855|ENST00000545950|KDM4F ENSG00000255855|ENST00000545950|KDM4F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.5487365722656 3 426.548629 1276.62406 NaN NaN NaN NaN NaN NaN NaN 29.03 1 28.968 28.468 29.468 -0.062159 0 0 0 0.98914 1 15003 15003 0.77653 0 1 32313 10796 21412 21823 38114 38114 -0.0031889660260731034 LHFHIMVFI 9 Unmodified _LHFHIMVFI_ 0 0 0 REV__nc|ENSG00000143190|P14859-3|POU2F1 REV__nc|ENSG00000143190|P14859-3|POU2F1 MSMS AL20221201_MKP_PDAC_01 4 385.8744201660156 3 386.216045 1155.62631 NaN NaN NaN NaN NaN NaN NaN 94.891 1 88.715 88.215 89.215 -6.1757 0 0 0 0.81228 1 62853 62853 5.7319 2.7366 1 + 32314 29674 21413 21824 38115 38115 0.054718606014830584 LHFHTDSF 8 Unmodified _LHFHTDSF_ 0 0 0 ENST00000460500.1_1_1:85123956-85128195:-|nuORF ENST00000460500.1_1_1:85123956-85128195:-|nuORF ENST00000460500.1_1_1:85123956-85128195:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7574768066406 2 502.235242 1002.45593 0.49806 0.00025014 1.8582 0.00093326 2.3563 0.0011834 502.2365019166493 47.794 0.16865 47.756 47.68 47.849 -0.038647 13 7 2 0 0 0 8.7369 1 25733 25733 11.114 0.93107 1 628390 32315 13639 21414 21825 38116 38116 -0.04519958796424817 LHFLGGRG 8 Unmodified _LHFLGGRG_ 0 0 0 ENST00000605573.1_1_3:187871343-187871442:-|nuORF;ENST00000605573.1_1_3:187871072-187871573:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.7433471679688 2 428.743037 855.471521 0.094268 4.0417E-05 1.274 0.00054621 1.3683 0.00058663 428.74357581766026 66.193 0.36111 65.71 65.541 65.902 -0.48323 34 19 2 0 0 0 0.80975 1 36111 36111 0.79363 0 1 9532400 32316 15845 21415 21826 38117 38117 0.038003725113071596 LHFLGGRG 8 Unmodified _LHFLGGRG_ 0 0 0 ENST00000605573.1_1_3:187871343-187871442:-|nuORF;ENST00000605573.1_1_3:187871072-187871573:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.7438049316406 2 428.743037 855.471521 0.90785 0.00038923 1.2839 0.00055047 2.1918 0.00093971 428.74346240306244 65.733 0.46173 65.742 65.571 66.033 0.0095596 66 22 4 0 0 0 0.80975 1 36099 36099 0.79363 0 1 78187000 32317 15845 21415 21826 38118 38118 0.038003725113071596 LHFLGGRG 8 Unmodified _LHFLGGRG_ 0 0 0 ENST00000605573.1_1_3:187871343-187871442:-|nuORF;ENST00000605573.1_1_3:187871072-187871573:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF ENST00000605573.1_1_3:187871343-187871442:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 428.743037 855.471521 0.16823 7.2126E-05 1.6399 0.0007031 1.8081 0.00077522 428.7436331977345 65.928 0.39697 65.928 65.738 66.135 0 0.13439 0.00021132 NaN 0.79363 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 17292000 32318 15845 21415 21826 0.038003725113071596 LHFLYKSFH 9 Unmodified _LHFLYKSFH_ 0 0 0 REV__ENSG00000133056|ENST00000684373|PIK3C2B REV__ENSG00000133056|ENST00000684373|PIK3C2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2171325683594 3 397.881831 1190.62366 -0.24652 -9.8085E-05 -1.4303 -0.00056909 -1.6768 -0.00066717 397.8812600314547 36.998 0.465 36.748 36.623 37.088 -0.2497 28 19 3 0 0 0 0.21767 1 19613 19613 2.9952 0.26005 1 1580400 + 32319 19902 21416 21827 38119 38119 0.03597728468184869 LHFSINVVY 9 Unmodified _LHFSINVVY_ 0 0 0 REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6 REV__nc|ENSG00000112414|Q86SQ4-2|ADGRG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2974853515625 2 546.297842 1090.58113 NaN NaN NaN NaN NaN NaN NaN 50.954 1 50.954 50.454 51.454 0 0 0 0 0.26667 1 28114 28114 26.884 3.7352 1 + 32320 18817 21417 21828 38120 38120 0.03946333339968078 LHGDGHRVP 9 Unmodified _LHGDGHRVP_ 0 0 0 ENST00000520970.5_1_8:22059101-22064847:+|nuORF ENST00000520970.5_1_8:22059101-22064847:+|nuORF ENST00000520970.5_1_8:22059101-22064847:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2608337402344 2 494.259582 986.504612 NaN NaN NaN NaN NaN NaN NaN 39.733 1 39.436 38.936 39.936 -0.29716 0 0 0 0.6032 1 20972 20972 12.532 2.3482 1 32321 14737 21418 21829 38121 38121 0.010819545633239613 LHGGLALL 8 Unmodified _LHGGLALL_ 0 0 0 REV__nc|ENSG00000154359|Q17RB8-2|LONRF1 REV__nc|ENSG00000154359|Q17RB8-2|LONRF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.9013977050781 2 397.250163 792.485774 -0.25628 -0.00010181 -0.041622 -1.6534E-05 -0.2979 -0.00011834 397.2501248958763 35.702 0.32657 35.727 35.602 35.928 0.024967 29 15 2 0 0 0 8.7369 1 18828 18828 17.087 0 1 11921000 + 32322 21227 21419 21830 38122 38122 0.08123024939561674 LHGGPAKP 8 Unmodified _LHGGPAKP_ 0 0 0 REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.724609375 2 388.724313 775.434072 1.1175 0.00043438 -0.18826 -7.3181E-05 0.9292 0.0003612 388.7242667541861 38.229 0.37181 33.86 33.702 34.074 -4.3689 30 22 2 0 0 0 0.78849 1 22529 22529 9.3474 0 1 19229000 + 32323 24002 21420 21831 38123 38123 0.03737281245662416 LHGNVGISYD 10 Unmodified _LHGNVGISYD_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7619018554688 2 537.764363 1073.51417 0.10127 5.4462E-05 -1.3189 -0.00070927 -1.2176 -0.0006548 537.7631095551644 40 0.21217 39.703 39.592 39.804 -0.29716 13 9 2 0 0 0 0.66569 1 21137 21137 6.7232 0.96273 1 1982400 + 32324 19369 21421 21832 38124 38124 -0.01964321941795788 LHGPWLYR 8 Unmodified _LHGPWLYR_ 0 0 0 REV__ENSG00000162572|ENST00000379116|SCNN1D REV__ENSG00000162572|ENST00000379116|SCNN1D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.76416015625 2 521.285069 1040.55558 0.56872 0.00029646 -0.57126 -0.00029779 -0.0025391 -1.3236E-06 521.2845502036758 51.617 0.27642 51.617 51.454 51.73 0 29 12 4 0 0 0 8.7369 1 28577 28577 10.183 4.423 1 5862700 + 32325 21659 21422 21833 38125 38125 0.036929036081801314 LHGYRICI 8 Unmodified _LHGYRICI_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7678833007812 2 487.765655 973.516756 1.2686 0.00061876 2.8457 0.001388 4.1142 0.0020068 487.7669623545717 49.793 0.21977 49.745 49.626 49.846 -0.048824 23 10 3 0 0 0 0.46494 1 26909 26909 38.151 3.9638 1 2159900 32326 3468 21423 21834 38126 38126 0.028938549821532433 LHGYSLTYFY 10 Unmodified _LHGYSLTYFY_ 0 0 0 REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|30|2|sense REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|30|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8738098144531 3 421.873001 1262.59717 -0.14442 -6.0926E-05 0.67774 0.00028592 0.53333 0.000225 421.8732581619655 44.205 0.27427 44.205 44.051 44.325 0 30 13 4 0 0 0 0.55245 1 24012 24012 13.615 1.3742 1 32495000 + 32327 29409 21424 21835 38127 38127 -0.023620052138085157 LHGYSLTYFY 10 Unmodified _LHGYSLTYFY_ 0 0 0 REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|30|2|sense REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|30|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.873291015625 3 421.873001 1262.59717 1.4624 0.00061695 0.99474 0.00041965 2.4572 0.0010366 421.8734754156153 53.907 1.1879 48.042 47.857 49.045 -5.8653 163 72 3 0 0 0 0.56675 1 34559 34559 12.873 2.0731 1 68609000 + 32328 29409 21424 21835 38128 38128 -0.023620052138085157 LHHCRSHNPVP 11 Unmodified _LHHCRSHNPVP_ 0 0 0 nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3;ENST00000488250.5_1_12:48131352-48135452:-|nuORF nc|ENSG00000079337|O95398-3|RAPGEF3 nc|ENSG00000079337|O95398-3|RAPGEF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8854675292969 3 432.884129 1295.63056 NaN NaN NaN NaN NaN NaN NaN 42.437 1 42.437 41.937 42.937 0 0 0 0 0.94148 1 22974 22974 1.4551 0.34536 1 32329 1274 21425 21836 38129 38129 -0.00543281922909955 LHHGDLLSL 9 Unmodified _LHHGDLLSL_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7754821777344 2 502.779816 1003.54508 0.33017 0.000166 -1.6482 -0.00082866 -1.318 -0.00066266 502.7778754821171 16.888 0.15247 14.331 14.246 14.398 -2.557 29 22 2 0 0 0 0.49272 1 8762 8762 7.9102 0.62092 1 1644500 32330 6552 21426 21837 38130 38130 0.043448761631111665 LHHGPTGG 8 Unmodified _LHHGPTGG_ 0 0 0 REV__ENSG00000267534|ENST00000646641|S1PR2 REV__ENSG00000267534|ENST00000646641|S1PR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1966552734375 2 388.195919 774.377286 NaN NaN NaN NaN NaN NaN NaN 16.776 1 16.776 16.276 17.276 0 0 0 0 0.97444 1 8212 8212 0.69038 0 1 + 32331 24613 21427 21838 38131 38131 -0.018927663108456727 LHHQGLGP 8 Unmodified _LHHQGLGP_ 0 0 0 ENST00000376753.8_1_1:11728822-11728969:+|nuORF ENST00000376753.8_1_1:11728822-11728969:+|nuORF ENST00000376753.8_1_1:11728822-11728969:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7333068847656 2 429.732669 857.450785 0.37973 0.00016318 1.2428 0.00053408 1.6226 0.00069726 429.73318193406783 59.595 0.44091 59.542 59.273 59.714 -0.053062 60 22 4 0 0 0 0.80975 1 32468 32468 0.79363 0 1 32856000 32332 12508 21428 21839 38132 38132 0.016357821316319132 LHHSDSYFR 9 Unmodified _LHHSDSYFR_ 0 0 0 REV__nc|ENSG00000118482|Q92576-2|PHF3 REV__nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8529052734375 3 387.852712 1160.53631 0.56989 0.00022103 -0.81083 -0.00031448 -0.24095 -9.3452E-05 387.8526112427234 71.958 0.36671 71.482 71.293 71.66 -0.47609 36 14 4 0 0 0 0.54444 1 39361 39361 2.7352 0.64919 1 2930600 + 32333 19150 21429 21840 38133 38133 -0.03754097473370166 LHHSDSYFR 9 Unmodified _LHHSDSYFR_ 0 0 0 REV__nc|ENSG00000118482|Q92576-2|PHF3 REV__nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 387.852712 1160.53631 0.56989 0.00022103 -0.81083 -0.00031448 -0.24095 -9.3452E-05 387.8526112427234 71.958 0.36671 71.482 71.293 71.66 -0.47609 0.012205 -0.00050035 NaN 2.7352 36 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2930600 + 32334 19150 21429 21840 -0.03754097473370166 LHHVGVGI 8 Unmodified _LHHVGVGI_ 0 0 0 REV__ENST00000369425.5_1_10:113914335-113914473:-|nuORF REV__ENST00000369425.5_1_10:113914335-113914473:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.2447204589844 2 416.245412 830.476272 NaN NaN NaN NaN NaN NaN NaN 20.134 1 20.163 19.663 20.663 0.028357 0 0 0 0.97444 1 10182 10182 0.79363 0 1 + 32335 26035 21430 21841 38134 38134 0.05425256654052646 LHHWIDLTF 9 Unmodified _LHHWIDLTF_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5416564941406 3 394.541586 1180.60293 -0.57189 -0.00022563 0.66705 0.00026318 0.09516 3.7545E-05 394.54186048347333 56.114 0.28939 56.045 55.904 56.194 -0.068737 42 14 4 0 0 0 0.48152 1 30582 30582 8.7454 3.0136 1 36646000 32336 7661 21431 21842 38135 38135 0.019851380885029357 LHIFLNFTP 9 Unmodified _LHIFLNFTP_ 0 0 0 ENST00000370339.7_1_20:61827244-61827448:-|nuORF ENST00000370339.7_1_20:61827244-61827448:-|nuORF ENST00000370339.7_1_20:61827244-61827448:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.307373046875 2 551.30821 1100.60187 0.31616 0.0001743 -3.003 -0.0016556 -2.6868 -0.0014813 551.3059178280571 74.203 0.35739 74.247 73.985 74.342 0.043983 25 15 2 0 0 0 0.37804 1 40878 40878 13.508 0 1 3068500 32337 12329 21432 21843 38136 38136 0.05558923719604536 LHIIQHFH 8 Unmodified _LHIIQHFH_ 0 0 0 REV__ENST00000410062.8_1_2:181922493-181925485:+|nuORF REV__ENST00000410062.8_1_2:181922493-181925485:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2638549804688 2 522.790518 1043.56648 1.0955 0.00057272 0.72175 0.00037732 1.8173 0.00095005 522.7908479646082 46.241 0.22623 46.241 46.164 46.391 0 15 10 2 0 0 0 8.7369 1 25240 25240 2.8892 0 1 2475400 + 32338 26706 21433 21844 38137 38137 0.04644305982469632 LHIISLLIILI 11 Unmodified _LHIISLLIILI_ 0 0 0 MBOAT1|p.F470I|1|0.2|ENSG00000172197|chr6:20102366-20102366|A/T|missense_variant MBOAT1|p.F470I|1|0.2|ENSG00000172197|chr6:20102366-20102366|A/T|missense_variant MBOAT1|p.F470I|1|0.2|ENSG00000172197|chr6:20102366-20102366|A/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1261.275024414062 1 1260.86536 1259.85808 0.49196 0.0006203 3.1624 0.0039873 3.6544 0.0046076 1260.8688379193518 68.077 0.096985 67.595 67.518 67.615 -0.48218 6 4 2 0 0 0 0.30605 1 37173 37173 0 0 1 2513300 32339 15987 21434 21845 38138 38138 0.23854606504073672 LHIKLLLLLF 10 Unmodified _LHIKLLLLLF_ 0 0 0 ENST00000483888.6_1_6:75838029-75838092:-|nuORF ENST00000483888.6_1_6:75838029-75838092:-|nuORF ENST00000483888.6_1_6:75838029-75838092:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.9205932617188 2 611.917927 1221.8213 NaN NaN NaN NaN NaN NaN NaN 68.815 1 68.815 68.315 69.315 0 0 0 0 1.0019 1 38351 38351 0.45834 0.45834 1 32340 14141 21435 21846 38139 38139 0.21926354678134885 LHIRGVAEEL 10 Unmodified _LHIRGVAEEL_ 0 0 0 REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5523376464844 3 379.552262 1135.63496 -0.22052 -8.3698E-05 0.53152 0.00020174 0.31101 0.00011804 379.5523299141142 35.537 0.15442 35.537 35.46 35.615 0 10 7 2 0 0 0 0.52888 1 18806 18806 12.873 0 1 2443200 + 32341 20489 21436 21847 38140 38140 0.07256505771670163 LHIVKVVAKKI 11 Unmodified _LHIVKVVAKKI_ 0 0 0 ENST00000453177.2_1_9:22747885-22748107:+|nuORF ENST00000453177.2_1_9:22747885-22748107:+|nuORF ENST00000453177.2_1_9:22747885-22748107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.4329833984375 2 624.431733 1246.84891 0.54585 0.00034085 0.02168 1.3538E-05 0.56753 0.00035438 624.4316748376259 84.24 0.38619 78.064 77.856 78.242 -6.1757 35 21 2 0 0 0 0.72952 1 55322 55322 1.4819 1.0236 1 22813000 32342 13552 21437 21848 38141 38141 0.2353625793834908 LHIVNPHDF 9 Unmodified _LHIVNPHDF_ 0 0 0 REV__ENSG00000133216|ENST00000374630|EPHB2 REV__ENSG00000133216|ENST00000374630|EPHB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.5611572265625 3 364.525936 1090.55598 0.82172 0.00029954 0.19215 7.0045E-05 1.0139 0.00036958 364.5262845994167 15.216 0.1377 12.688 12.617 12.754 -2.5273 27 18 2 0 0 0 0.21404 1 7774 7774 5.2969 0.96765 1 1735200 + 32343 19914 21438 21849 38142 38142 0.014322785373678926 LHKNQIAFRL 10 Unmodified _LHKNQIAFRL_ 0 0 0 REV__nc|ENSG00000162772|P18847-2|ATF3 REV__nc|ENSG00000162772|P18847-2|ATF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.3681640625 2 620.369664 1238.72478 NaN NaN NaN NaN NaN NaN NaN 103.63 1 103.58 103.08 104.08 -0.047928 0 0 0 1.0024 1 57550 57550 0.40072 0 1 + 32344 21690 21439 21850 38143 38143 0.11496180170888692 LHKNQIIH 8 Unmodified _LHKNQIIH_ 0 0 0 ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.796142578125 2 501.795801 1001.57705 -0.3012 -0.00015114 1.2565 0.00063051 0.95532 0.00047937 501.79623273192954 38.368 0.23983 38.081 37.977 38.217 -0.28687 16 10 2 0 0 0 0.57408 1 20214 20214 28.173 12.405 1 1207300 32345 8483 21440 21851 38144 38144 0.07632288636898465 LHKNQIIH 8 Unmodified _LHKNQIIH_ 0 0 0 ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 501.795801 1001.57705 1.2248 0.00061461 0.1201 6.0266E-05 1.3449 0.00067487 502.2972992043534 42.661 0.14105 37.977 37.885 38.026 -4.6846 0.021789 -0.0006324 NaN 28.173 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 8044900 32346 8483 21440 21851 0.07632288636898465 LHKRAHLL 8 Unmodified _LHKRAHLL_ 0 0 0 REV__ENSG00000166415|ENST00000360509|WDR72 REV__ENSG00000166415|ENST00000360509|WDR72 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7442932128906 2 494.314161 986.613768 NaN NaN NaN NaN NaN NaN NaN 101.14 1 101.1 100.6 101.6 -0.04216 0 0 0 0.97444 1 56185 56185 0.79363 0 1 + 32347 22115 21441 21852 38145 38145 0.11992585253472043 LHLAFSLWL 9 Unmodified _LHLAFSLWL_ 0 0 0 REV__ENST00000486015.1_1_10:77162714-77167299:+|nuORF REV__ENST00000486015.1_1_10:77162714-77167299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2119445800781 3 367.21481 1098.6226 1.8489 0.00067896 -3.6506 -0.0013406 -1.8017 -0.0006616 367.21320449936593 37.431 0.82188 33.148 32.765 33.587 -4.2835 186 49 7 0 0 0 0.2001 1 21820 21820 16.149 2.2431 1 271140000 + 32348 27791 21442 21853 38146 38146 0.07723514099279782 LHLEENQL 8 Unmodified _LHLEENQL_ 0 0 0 ENSG00000170382|ENST00000367177|LRRN2 ENSG00000170382|ENST00000367177|LRRN2 ENSG00000170382|ENST00000367177|LRRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2638549804688 2 498.261456 994.50836 0.3229 0.00016089 3.4911 0.0017395 3.814 0.0019004 498.2635779612418 69.523 0.22092 69.523 69.377 69.598 0 12 9 2 0 0 0 0.72953 1 38757 38757 14.582 0 1 330350 32349 7979 21443 21854 38147 38147 0.010885795465128467 LHLFRLVK 8 Unmodified _LHLFRLVK_ 0 0 0 REV__ENSG00000122728|ENST00000242310|TAF1L REV__ENSG00000122728|ENST00000242310|TAF1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3350219726562 2 513.334562 1024.65457 NaN NaN NaN NaN NaN NaN NaN 104.42 1 104.38 103.88 104.88 -0.048737 0 0 0 0.97444 1 57978 57978 0.79363 0 1 + 32350 19355 21444 21855 38148 38148 0.14322926573095174 LHLGPLMRP 9 Unmodified _LHLGPLMRP_ 0 0 0 REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.28125 2 517.302404 1032.59026 0.30813 0.00015939 1.6367 0.00084667 1.9448 0.0010061 517.3040840870711 65.833 0.25845 65.833 65.718 65.976 0 19 13 2 0 0 0 0.21242 1 36691 36691 2.3027 0 1 1115800 + 32351 26335 21445 21856 38149 38149 0.07526403424617456 LHLKDLISR 9 Unmodified _LHLKDLISR_ 0 0 0 REV__ENSG00000175189|ENST00000309668|INHBC REV__ENSG00000175189|ENST00000309668|INHBC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8933715820312 3 365.560869 1093.66078 -0.075916 -2.7752E-05 -2.2688 -0.0008294 -2.3447 -0.00085715 365.8938771118067 29.833 0.34191 29.863 29.653 29.995 0.030106 29 13 3 0 0 0 0.49766 1 15578 15578 7.609 1.4171 1 1638900 + 32352 22848 21446 21857 38150 38150 0.1176940001391813 LHLKKKKKK 9 Unmodified _LHLKKKKKK_ 0 0 0 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1708984375 3 384.276404 1149.80738 NaN NaN NaN NaN NaN NaN NaN 18.542 1 18.565 18.065 19.065 0.023106 0 0 0 0.8622 1 9304 9304 0 0 1 32353 16374 21447 21858 38151 38151 0.23847121969697582 LHLLLLLLLS 10 Unmodified _LHLLLLLLLS_ 0 0 0 ENSG00000134285|ENST00000550765|FKBP11;ENST00000553027.1_1_12:49319073-49319295:-|nuORF;ENST00000551694.5_1_12:49318004-49319277:-|nuORF;nc|ENSG00000134285|Q9NYL4-2|FKBP11 ENSG00000134285|ENST00000550765|FKBP11 ENSG00000134285|ENST00000550765|FKBP11 MSMS AL20221201_MKP_PDAC_01 4 574.3959350585938 2 574.394285 1146.77402 NaN NaN NaN NaN NaN NaN NaN 108.83 1 102.66 102.16 103.16 -6.1757 0 0 0 1.0061 1 72715 72715 0 0 1 32354 4584 21448 21859 38152 38152 0.2065007540716124 LHLLLVLLL 9 Unmodified _LHLLLVLLL_ 0 0 0 REV__ENST00000452853.6_1_3:149683261-149683384:-|nuORF REV__ENST00000452853.6_1_3:149683261-149683384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1046.56494140625 1 1046.73361 1045.72634 -0.68706 -0.00071917 -0.61455 -0.00064327 -1.3016 -0.0013624 1046.730781160835 44.339 0.24438 44.339 44.228 44.472 0 16 12 2 0 0 0 0.61256 1 24197 24197 0.6015 0 1 32611000 + 32355 27225 21449 21860 38153 38153 0.20530421206944993 LHLLMKLPLK 10 Unmodified _LHLLMKLPLK_ 0 0 0 ENST00000342435.8_1_3:146233569-146233638:-|nuORF ENST00000342435.8_1_3:146233569-146233638:-|nuORF ENST00000342435.8_1_3:146233569-146233638:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3942260742188 2 603.393762 1204.77297 NaN NaN NaN NaN NaN NaN NaN 89.951 1 89.45 88.95 89.95 -0.50171 0 0 0 0.99248 1 49173 49173 1.4819 0 1 32356 11983 21450 21861 38154 38154 0.1787753776657155 LHLLVIMHR 9 Unmodified _LHLLVIMHR_ 0 0 0 ENST00000418058.1_1_1:65280440-65280524:+|nuORF;ENST00000294428.7_1_1:65280416-65296531:+|nuORF ENST00000418058.1_1_1:65280440-65280524:+|nuORF ENST00000418058.1_1_1:65280440-65280524:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8987121582031 3 377.898828 1130.67465 -0.04086 -1.5441E-05 0.76061 0.00028744 0.71975 0.00027199 377.89904232574037 32.987 0.59536 33.017 32.842 33.437 0.029743 71 25 4 0 0 0 0.60285 1 17292 17292 1.1933 0 1 11826000 32357 11485 21451 21862 38155 38155 0.11454354241391229 LHLMILEY 8 Unmodified _LHLMILEY_ 0 0 0 ENST00000467843.6_1_17:25636231-25636288:+|nuORF ENST00000467843.6_1_17:25636231-25636288:+|nuORF ENST00000467843.6_1_17:25636231-25636288:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.78515625 2 516.283346 1030.55214 1.1116 0.00057388 0.66231 0.00034194 1.7739 0.00091582 516.2835932631696 21.698 0.3269 18.963 18.863 19.19 -2.7348 36 17 3 0 0 0 0.71616 1 11640 11640 15.768 1.1865 1 2280500 32358 13791 21452 21863 38156 38156 0.03808472719288147 LHLMKRIW 8 Unmodified _LHLMKRIW_ 0 0 0 REV__ENSG00000183735|ENST00000331710|TBK1 REV__ENSG00000183735|ENST00000331710|TBK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.82421875 2 548.826047 1095.63754 0.44251 0.00024286 -2.5539 -0.0014017 -2.1114 -0.0011588 548.824436973531 85.959 0.34733 85.456 85.274 85.621 -0.50318 16 13 2 0 0 0 0.80624 1 47065 47065 2.8892 0.58649 1 271350 + 32359 23372 21453 21864 38157 38157 0.09354682695607153 LHLMKRIW 8 Unmodified _LHLMKRIW_ 0 0 0 REV__ENSG00000183735|ENST00000331710|TBK1 REV__ENSG00000183735|ENST00000331710|TBK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.826047 1095.63754 0.44251 0.00024286 -2.5539 -0.0014017 -2.1114 -0.0011588 548.824436973531 85.959 0.34733 85.456 85.274 85.621 -0.50318 0 0 NaN 2.8892 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 271350 + 32360 23372 21453 21864 0.09354682695607153 LHLPADFCI 9 Unmodified _LHLPADFCI_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7649536132812 2 514.76532 1027.51609 0.45515 0.0002343 0.50165 0.00025823 0.9568 0.00049253 514.7657540063104 83.284 0.35641 82.786 82.672 83.028 -0.49751 27 14 2 0 0 0 0.18465 1 45603 45603 24.674 5.2349 1 1235200 32361 740 21454 21865 38158 38158 0.003430155424439363 LHLPGTWRSP 10 Unmodified _LHLPGTWRSP_ 0 0 0 ENSG00000175262|ENST00000377004|C1orf127 ENSG00000175262|ENST00000377004|C1orf127 ENSG00000175262|ENST00000377004|C1orf127 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3195190429688 2 582.31964 1162.62473 0.97883 0.00056999 -0.6162 -0.00035883 0.36263 0.00021116 582.3192412534305 68.283 0.26799 68.308 68.168 68.436 0.025146 35 13 3 0 0 0 0.2178 1 37480 37480 32.305 17.9 1 16037000 32362 8502 21455 21866 38159 38159 0.04991942837091301 LHLPGTWRSP 10 Unmodified _LHLPGTWRSP_ 0 0 0 ENSG00000175262|ENST00000377004|C1orf127 ENSG00000175262|ENST00000377004|C1orf127 ENSG00000175262|ENST00000377004|C1orf127 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8204345703125 2 582.31964 1162.62473 1.1534 0.00067166 1.2725 0.00074101 2.4259 0.0014127 582.3207148557011 96.111 0.50536 89.936 89.748 90.253 -6.1757 51 30 2 0 0 0 0.11755 2 63666 63666;63798 43.858 3.4435 1 18752000 32363 8502 21455 21866 38160;38161 38160 0.04991942837091301 LHLPLIPH 8 Unmodified _LHLPLIPH_ 0 0 0 ENST00000400451.6_1_22:20760237-20760540:+|nuORF ENST00000400451.6_1_22:20760237-20760540:+|nuORF ENST00000400451.6_1_22:20760237-20760540:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.5701904296875 2 470.292362 938.570172 0.0078541 3.6937E-06 -2.7077 -0.0012734 -2.6998 -0.0012697 470.29110919818964 53.199 0.15396 53.136 53.044 53.198 -0.063423 14 7 2 0 0 0 8.7369 1 28844 28844 17.087 2.5049 1 1193400 32364 12876 21456 21867 38162 38162 0.09842975756328087 LHLQFIIYF 9 Unmodified _LHLQFIIYF_ 0 0 0 ENST00000544096.5_1_11:69487845-69488106:-|nuORF;ENST00000355486.3_1_11:69487845-69490019:-|nuORF ENST00000544096.5_1_11:69487845-69488106:-|nuORF ENST00000544096.5_1_11:69487845-69488106:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5624084472656 3 398.562099 1192.66447 0.71936 0.00028671 0.29119 0.00011606 1.0105 0.00040277 398.5621061538307 77.892 3.468 71.716 69.319 72.787 -6.1757 582 197 5 0 0 0 0.60285 1 49889 49889 1.1933 0.41681 1 941360000 32365 12077 21457 21868 38163 38163 0.07584069787799308 LHLQQLSNFFH 11 Unmodified _LHLQQLSNFFH_ 0 0 0 ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.8030395507812 3 461.910449 1382.70952 0.39595 0.00018289 -0.14735 -6.8061E-05 0.2486 0.00011483 461.91036188427887 61.498 0.6573 61.465 61.231 61.888 -0.032787 76 32 3 0 0 0 0.3058 1 33599 33599 0.50596 0 1 4985300 32366 10556 21458 21869 38164 38164 0.03347268583024743 LHLQTTEEP 9 Unmodified _LHLQTTEEP_ 0 0 0 ENST00000418945.1_1_6:99873507-99873624:+|nuORF ENST00000418945.1_1_6:99873507-99873624:+|nuORF ENST00000418945.1_1_6:99873507-99873624:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3165893554688 2 534.272021 1066.52949 0.38248 0.00020435 -1.5526 -0.00082952 -1.1701 -0.00062517 534.271393408108 78.526 0.23796 78.579 78.49 78.728 0.052452 18 9 3 0 0 0 0.18521 1 43437 43437 16.942 6.7589 1 1249500 32367 13078 21459 21870 38165 38165 -0.0011145514463350992 LHLRAQRSII 10 Unmodified _LHLRAQRSII_ 0 0 0 REV__ENSG00000163959|ENST00000296327|SLC51A REV__ENSG00000163959|ENST00000296327|SLC51A MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9197998046875 3 402.919168 1205.73567 0.97586 0.00039319 0.27371 0.00011028 1.2496 0.00050348 402.9192851545 39.427 0.41222 34.976 34.782 35.194 -4.4509 43 24 2 0 0 0 0.47869 1 23443 23443 17.443 0.87677 1 18780000 + 32368 21842 21460 21871 38166 38166 0.1410358254518087 LHLTETEME 9 Unmodified _LHLTETEME_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7584838867188 2 551.757889 1101.50123 0.54008 0.00029799 1.5954 0.00088026 2.1355 0.0011783 551.758659144699 50.123 0.13391 50.123 50.075 50.209 0 12 6 2 0 0 0 0.18465 1 27638 27638 24.674 14.49 1 1622000 + 32369 21352 21461 21872 38167 38167 -0.04546521116208169 LHLTWLTSL 9 Unmodified _LHLTWLTSL_ 0 0 0 ENST00000488633.1_1_2:96937101-96937260:+|nuORF ENST00000488633.1_1_2:96937101-96937260:+|nuORF ENST00000488633.1_1_2:96937101-96937260:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3134155273438 2 542.313492 1082.61243 -0.35143 -0.00019058 0.35803 0.00019417 0.0066057 3.5824E-06 542.3137615912889 55.892 0.30053 55.414 55.238 55.538 -0.47798 42 14 4 0 0 0 0.12841 1 30392 30392 30.225 1.738 1 18542000 32370 14226 21462 21873 38168 38168 0.07442906374035374 LHLVYVLHK 9 Unmodified _LHLVYVLHK_ 0 0 0 REV__nc|ENSG00000164691|Q8N103-4|TAGAP REV__nc|ENSG00000164691|Q8N103-4|TAGAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.56640625 3 374.565843 1120.6757 0.82427 0.00030874 1.0861 0.00040682 1.9104 0.00071557 374.5662127903873 65.928 0.63943 65.938 65.44 66.08 0.0095596 60 31 2 0 0 0 0.61256 1 36142 36142 0.26902 0.033176 1 14455000 + 32371 21940 21463 21874 38169 38169 0.12018891881916716 LHLWLFIS 8 Unmodified _LHLWLFIS_ 0 0 0 REV__ENST00000415922.6_1_6:26636045-26636150:-|nuORF REV__ENST00000415922.6_1_6:26636045-26636150:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 514.80126953125 2 514.80002 1027.58549 NaN NaN NaN NaN NaN NaN NaN 19.634 1 16.977 16.477 17.477 -2.6564 0 0 0 0.97444 1 10416 10416 5.2307 0 1 + 32372 26765 21464 21875 38170 38170 0.07279842553521121 LHLWLYTWLKL 11 Unmodified _LHLWLYTWLKL_ 0 0 0 REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF REV__ENST00000360565.7_2_19:50161652-50161889:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.8735961914062 4 372.220875 1484.85439 0.35155 0.00013086 -0.41013 -0.00015266 -0.058574 -2.1802E-05 372.4701142582105 39.051 0.5786 39.051 38.598 39.177 0 32 26 2 0 0 0 0.30599 1 20785 20785 0.50596 0 1 1010200 + 32373 25911 21465 21876 38171 38171 0.13135936730168396 LHMAFLKSL 9 Unmodified _LHMAFLKSL_ 0 0 0 ENST00000526600.1_1_11:12963207-12963294:+|nuORF ENST00000526600.1_1_11:12963207-12963294:+|nuORF ENST00000526600.1_1_11:12963207-12963294:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.2858276367188 2 530.304613 1058.59467 NaN NaN NaN NaN NaN NaN NaN 96.122 1 89.947 89.447 90.447 -6.1757 0 0 0 0.54015 1 63686 63686 14.582 0 1 32374 14823 21466 21877 38172 38172 0.06771867847533031 LHMDRNPY 8 Unmodified _LHMDRNPY_ 0 0 0 ENSG00000057608|ENST00000380191|GDI2;nc|ENSG00000057608|P50395-2|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2457275390625 2 523.247826 1044.4811 0.44589 0.00023331 -2.0952 -0.0010963 -1.6493 -0.000863 523.2462461901584 76.183 0.27006 76.183 76.126 76.396 0 16 10 2 0 0 0 0.76266 1 42424 42424 11.64 1.5664 1 1003700 32375 793 21467 21878 38173 38173 -0.039362272654898334 LHMFQNRIN 9 Unmodified _LHMFQNRIN_ 0 0 0 REV__ENSG00000119685|ENST00000298832|TTLL5 REV__ENSG00000119685|ENST00000298832|TTLL5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.1946411132812 3 391.537959 1171.59205 0.16063 6.2894E-05 -0.79397 -0.00031087 -0.63334 -0.00024798 391.5376672667642 25.485 0.3231 22.602 22.425 22.748 -2.8831 69 17 5 0 0 0 0.21242 1 13878 13878 2.9952 0.90923 1 70992000 + 32376 19202 21468 21879 38174 38174 0.013114124426010676 LHMGRDFPF 9 Unmodified _LHMGRDFPF_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000576107.5_1_16:70497084-70500232:+|nuORF;ENST00000464499.5_1_16:70497084-70500964:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2767333984375 2 560.273844 1118.53313 0.37381 0.00020944 1.9869 0.0011132 2.3607 0.0013226 560.2758403669443 76.852 0.22882 76.852 76.663 76.892 0 16 9 2 0 0 0 0.53666 1 42721 42721 5.2307 0 1 751260 32377 6513 21469 21880 38175 38175 -0.021390638517686966 LHMGRDFPF 9 Unmodified _LHMGRDFPF_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000576107.5_1_16:70497084-70500232:+|nuORF;ENST00000464499.5_1_16:70497084-70500964:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.273844 1118.53313 -0.34071 -0.00019089 4.6863 0.0026256 4.3456 0.0024347 561.2809482780086 77.358 0.3315 76.876 76.624 76.956 -0.4826 0.011756 0.0015604 NaN 5.2307 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1355400 32378 6513 21469 21880 -0.021390638517686966 LHMLCYHF 8 Unmodified _LHMLCYHF_ 0 0 0 MLT1L_dup10991|chr19:48704452-48704884:-|2.0721407261463693|0.1256829385754321|4.04|178.0|22|2|anti-sense MLT1L_dup10991|chr19:48704452-48704884:-|2.0721407261463693|0.1256829385754321|4.04|178.0|22|2|anti-sense MLT1L_dup10991|chr19:48704452-48704884:-|2.0721407261463693|0.1256829385754321|4.04|178.0|22|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.251220703125 2 532.24624 1062.47793 0.4507 0.00023988 3.4165 0.0018184 3.8672 0.0020583 532.2476773728889 59.235 0.31026 59.235 59.068 59.379 0 17 12 2 0 0 0 0.76859 1 32960 32960 11.114 0 1 1745200 32379 15997 21470 21881 38176 38176 -0.050811936438776684 LHNELFKQL 9 Unmodified _LHNELFKQL_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.217529296875 3 381.216991 1140.62914 0.97432 0.00037143 0.34328 0.00013087 1.3176 0.00050229 381.2171007798661 44.141 0.61021 39.289 39.052 39.662 -4.852 136 42 4 0 0 0 0.19127 1 27089 27089 22.658 3.9369 1 231950000 + 32380 23101 21471 21882 38177 38177 0.06445407260002867 LHNFPRYEI 9 Unmodified _LHNFPRYEI_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8773498535156 3 396.876857 1187.60874 0.31708 0.00012584 0.70834 0.00028112 1.0254 0.00040696 396.87721921866324 2.8871 0.10716 0.4051 0.3322 0.43935 -2.482 88 45 3 0 0 0 0.52844 1 1436 1436 5.7319 0 1 5184900 32381 5164 21472 21883 38178 38178 0.022442366001769187 LHNFPRYEI 9 Unmodified _LHNFPRYEI_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.87744140625 3 396.876857 1187.60874 0.31577 0.00012532 0.22509 8.9332E-05 0.54086 0.00021465 396.8771213051988 3.8394 0.1121 1.3574 1.2883 1.4004 -2.482 100 47 4 0 0 0 0.54213 1 1952 1952 4.897 0 1 5010600 32382 5164 21472 21883 38179 38179 0.022442366001769187 LHNFPRYEI 9 Unmodified _LHNFPRYEI_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MSMS AL20221201_MKP_PDAC_01 4 396.8775024414062 3 396.876857 1187.60874 NaN NaN NaN NaN NaN NaN NaN 5.2357 1 2.7538 2.2538 3.2538 -2.482 0 0 0 0.85261 1 2658 2658 1.1933 0 1 32383 5164 21472 21883 38180 38180 0.022442366001769187 LHNGPGLI 8 Unmodified _LHNGPGLI_ 0 0 0 REV__ENSG00000100888|ENST00000646647|CHD8 REV__ENSG00000100888|ENST00000646647|CHD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.7384643554688 2 410.73742 819.460287 0.7943 0.00032625 0.31973 0.00013132 1.114 0.00045757 410.73755984764136 46.022 0.32941 41.067 40.878 41.208 -4.9549 38 21 2 0 0 0 0.61462 1 28302 28302 24.674 0 1 13698000 + 32384 18112 21473 21884 38181 38181 0.043335504171295725 LHNNLAVRL 9 Unmodified _LHNNLAVRL_ 0 0 0 REV__ENSG00000073861|ENST00000177694|TBX21 REV__ENSG00000073861|ENST00000177694|TBX21 MSMS AL20221201_MKP_PDAC_01 4 525.3143310546875 2 525.314358 1048.61416 NaN NaN NaN NaN NaN NaN NaN 17.074 1 14.487 13.987 14.987 -2.5866 0 0 0 0.6557 1 8897 8897 10.824 0.75 1 + 32385 17543 21474 21885 38182 38182 0.09179960182632385 LHNNSVHVLD 10 Unmodified _LHNNSVHVLD_ 0 0 0 REV__nc|ENSG00000197302|Q7Z2F6-2|KRBOX5 REV__nc|ENSG00000197302|Q7Z2F6-2|KRBOX5 MSMS AL20221201_MKP_PDAC_01 4 574.2965087890625 2 574.296362 1146.57817 NaN NaN NaN NaN NaN NaN NaN 14.319 1 11.816 11.316 12.316 -2.5029 0 0 0 0.92825 1 7265 7265 6.7232 0.51738 1 + 32386 28427 21475 21886 38183 38183 0.010744582151346549 LHNPLGTLTMS 11 Unmodified _LHNPLGTLTMS_ 0 0 0 REV__ENSG00000163840|ENST00000296161|DTX3L REV__ENSG00000163840|ENST00000296161|DTX3L MSMS AL20221201_MKP_PDAC_01 4 592.3145141601562 2 592.310623 1182.60669 NaN NaN NaN NaN NaN NaN NaN 87.076 1 80.9 80.4 81.4 -6.1757 0 0 0 0.77961 1 57406 57406 13.042 2.2185 1 + 32387 21825 21476 21887 38184 38184 0.022694398000794536 LHNRFYAP 8 Unmodified _LHNRFYAP_ 0 0 0 REV__ENSG00000144962|ENST00000351008|SPATA16 REV__ENSG00000144962|ENST00000351008|SPATA16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7642822265625 2 509.266876 1016.5192 0.43434 0.00022119 4.4455 0.0022639 4.8798 0.0024851 509.26945185311945 45.729 0.19849 45.729 45.605 45.803 0 15 9 2 0 0 0 8.7369 1 24894 24894 6.3541 0 1 2785600 + 32388 20748 21477 21888 38185 38185 0.011600267114658891 LHNTRLFL 8 Unmodified _LHNTRLFL_ 0 0 0 REV__ENSG00000110851|ENST00000228437|PRDM4 REV__ENSG00000110851|ENST00000228437|PRDM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2974548339844 2 507.298176 1012.5818 NaN NaN NaN NaN NaN NaN NaN 85.06 1 84.558 84.058 85.058 -0.5015 0 0 0 0.9706 1 46542 46542 6.3541 0 1 + 32389 18725 21478 21889 38186 38186 0.07601172779641274 LHPACALL 8 Unmodified _LHPACALL_ 0 0 0 ENST00000467242.1_1_2:30455222-30455939:+|nuORF ENST00000467242.1_1_2:30455222-30455939:+|nuORF ENST00000467242.1_1_2:30455222-30455939:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2393493652344 2 419.236199 836.457844 NaN NaN NaN NaN NaN NaN NaN 46.36 1 46.023 45.523 46.523 -0.33664 0 0 0 0.9185 1 24811 24811 17.087 0 1 32390 13772 21479 21890 38187 38187 0.03307378687827622 LHPEMEQGLY 10 Unmodified _LHPEMEQGLY_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MSMS AL20221201_MKP_PDAC_01 4 608.7886352539062 2 608.786981 1215.55941 NaN NaN NaN NaN NaN NaN NaN 28.27 1 25.121 24.621 25.621 -3.1482 0 0 0 0.81521 1 15752 15752 11.64 0.84079 1 + 32391 21267 21480 21891 38188 38188 -0.039748394709249624 LHPETEHAF 9 Unmodified _LHPETEHAF_ 0 0 0 ENST00000425416.6_2_2:11966976-11967150:+|nuORF ENST00000425416.6_2_2:11966976-11967150:+|nuORF ENST00000425416.6_2_2:11966976-11967150:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7603759765625 2 540.759081 1079.50361 0.30628 0.00016562 0.36203 0.00019577 0.66831 0.00036139 540.7592470007613 58.427 0.42345 58.427 58.206 58.63 0 60 16 5 0 0 0 0.18465 1 32479 32479 24.674 1.5255 1 84124000 32392 13164 21481 21892 38189 38189 -0.0329630459625605 LHPHSEFA 8 Unmodified _LHPHSEFA_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2302551269531 2 469.229959 936.445365 0.31715 0.00014881 0.34441 0.00016161 0.66156 0.00031042 469.229954078014 45.188 0.63066 40.336 40.098 40.729 -4.852 108 42 3 0 0 0 0.72953 2 27708 27708;27851 14.582 14.582 1 99345000 + 32393 17386 21482 21893 38190;38191 38190 -0.025399414508569862 LHPKSFSF 8 Unmodified _LHPKSFSF_ 0 0 0 REV__ENSG00000189420|ENST00000338647|ZFP92 REV__ENSG00000189420|ENST00000338647|ZFP92 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7590026855469 2 481.758352 961.502152 NaN NaN NaN NaN NaN NaN NaN 68.337 1 68.337 67.837 68.837 0 0 0 0 0.97348 1 38096 38096 5.7604 0 1 + 32394 23781 21483 21894 38192 38192 0.019861061056758444 LHPLNYLNS 9 Unmodified _LHPLNYLNS_ 0 0 0 REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF REV__ENST00000382874.6_1_13:20567378-20567441:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5268249511719 3 357.525825 1069.55564 1.3315 0.00047605 0.18174 6.4976E-05 1.5132 0.00054102 357.5259267247245 32.738 0.27744 28.881 28.732 29.01 -3.8562 28 14 3 0 0 0 0.36964 1 18675 18675 9.544 0 1 16464000 + 32395 26349 21484 21895 38193 38193 0.0236485881750923 LHPQQLHLL 9 Unmodified _LHPQQLHLL_ 0 0 0 nc|ENSG00000100722|Q6PJT7-5|ZC3H14;nc|ENSG00000100722|Q6PJT7-9|ZC3H14;nc|ENSG00000100722|Q6PJT7-2|ZC3H14;ENSG00000100722|ENST00000251038|ZC3H14;ENST00000554020.5_1_14:89068416-89075752:+|nuORF nc|ENSG00000100722|Q6PJT7-5|ZC3H14 nc|ENSG00000100722|Q6PJT7-5|ZC3H14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8251953125 2 549.824558 1097.63456 0.81256 0.00044677 0.22818 0.00012546 1.0407 0.00057223 549.8249087221658 57.731 0.22173 57.665 57.554 57.775 -0.066036 15 10 2 0 0 0 0.14 1 31448 31448 24.674 1.5255 1 1884400 32396 1867 21485 21896 38194 38194 0.08965130842466351 LHPYSLAGL 9 Unmodified _LHPYSLAGL_ 0 0 0 REV__ENST00000498526.1_1_2:130897068-130897428:-|nuORF REV__ENST00000498526.1_1_2:130897068-130897428:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.2453002929688 2 485.77146 969.528367 0.7083 0.00034407 -3.7441 -0.0018188 -3.0358 -0.0014747 485.7700656254109 43.534 0.37209 38.769 38.677 39.05 -4.7648 36 22 2 0 0 0 0.097209 1 26518 26518 30.225 3.8835 1 8371900 + 32397 27996 21486 21897 38195 38195 0.042383752771456784 LHQAEIATI 9 Unmodified _LHQAEIATI_ 0 0 0 REV__nc|ENSG00000104812|P13807-2|GYS1 REV__nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2799987792969 2 498.279649 994.544745 0.52785 0.00026301 0.22547 0.00011234 0.75331 0.00037536 498.28000707371115 47.356 0.49785 47.356 47.125 47.623 0 82 22 5 0 0 0 0.05447 1 25863 25863 43.858 9.4566 1 50371000 + 32398 18375 21487 21898 38196 38196 0.04725456443236453 LHQGTRLSK 9 Unmodified _LHQGTRLSK_ 0 0 0 ENST00000229405.8_1_6:35263143-35263311:+|nuORF ENST00000229405.8_1_6:35263143-35263311:+|nuORF ENST00000229405.8_1_6:35263143-35263311:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7595825195312 2 520.30399 1038.59343 -0.58996 -0.00030696 -0.033805 -1.7589E-05 -0.62377 -0.00032455 520.3042093450862 19.371 0.14131 19.394 19.305 19.446 0.023106 15 12 2 0 0 0 0.21819 1 9763 9763 2.0598 0 1 535950 32399 11062 21488 21899 38197 38197 0.0756736980297319 LHQHDPQDL 9 Unmodified _LHQHDPQDL_ 0 0 0 nc|ENSG00000283154|P0DPB3-2|SCHIP1;ENSG00000283154|ENST00000638749|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38-2|IQCJ-SCHIP1;nc|ENSG00000283154|B3KU38|IQCJ-SCHIP1 nc|ENSG00000283154|P0DPB3-2|SCHIP1 nc|ENSG00000283154|P0DPB3-2|SCHIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2291259765625 2 551.767437 1101.52032 0.64037 0.00035333 0.0072511 4.0009E-06 0.64762 0.00035733 551.7676008306138 101.78 0.11975 95.6 95.524 95.644 -6.1757 21 9 3 0 0 0 0.54444 1 68259 68259 4.756 0 1 101690000 32400 10949 21489 21900 38198 38198 -0.026378037102858798 LHQHERYLCK 10 Unmodified _LHQHERYLCK_ 0 0 0 nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2 nc|ENSG00000169554|O60315-2|ZEB2 nc|ENSG00000169554|O60315-2|ZEB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.896240234375 3 442.896034 1325.66627 1.2257 0.00054285 -2.4327 -0.0010774 -1.207 -0.00053459 442.89602076257273 94.626 0.32682 88.45 88.315 88.642 -6.1757 26 18 2 0 0 0 0.65023 1 62662 62662 8.4443 1.8209 1 5721800 32401 7883 21490 21901 38199 38199 0.0164675553410234 LHQINNYELF 10 Unmodified _LHQINNYELF_ 0 0 0 REV__nc|ENSG00000164342|O15455-2|TLR3 REV__nc|ENSG00000164342|O15455-2|TLR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.887939453125 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 61.261 1 60.772 60.272 61.272 -0.48932 0 0 0 0.98914 1 33365 33365 0.77653 0 1 + 32402 21910 21491 21902 38200 38200 0.007201845634881465 LHQRDIFL 8 Unmodified _LHQRDIFL_ 0 0 0 REV__nc|nan|Q9GZU0-2|C6orf62 REV__nc|nan|Q9GZU0-2|C6orf62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2962036132812 2 521.295633 1040.57671 0.17551 9.149E-05 0.2662 0.00013877 0.44171 0.00023026 521.2955636432109 42.346 0.22075 42.337 42.247 42.467 -0.0088196 20 9 3 0 0 0 0.44629 1 22659 22659 39.957 0.0076237 1 7056200 + 32403 18809 21492 21903 38201 38201 0.0580486891703913 LHQRSVSK 8 Unmodified _LHQRSVSK_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000565793.5_1_15:79069566-79092863:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ENST00000566303.5_1_15:79059386-79103601:-|nuORF ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7778625488281 2 477.777608 953.540663 -0.44366 -0.00021197 0.79395 0.00037933 0.3503 0.00016736 477.7779529124179 18.721 0.16982 18.745 18.639 18.809 0.023106 59 25 3 0 0 0 0.80799 1 9367 9367 1.8442 0 1 3703100 32404 4817 21493 21904 38202 38202 0.06203411740193587 LHQSSRCQS 9 Unmodified _LHQSSRCQS_ 0 0 0 REV__ENST00000366577.9_1_1:236987502-236988659:+|nuORF REV__ENST00000366577.9_1_1:236987502-236988659:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2696533203125 2 523.245815 1044.47708 1.2223 0.00063956 -4.3611 -0.0022819 -3.1388 -0.0016424 523.2443203072041 42.69 0.27273 42.69 42.544 42.816 0 21 13 2 0 0 0 0.18521 1 23203 23203 16.942 3.8998 1 2831900 + 32405 25956 21494 21905 38203 38203 -0.04338316759208283 LHQSSRCQS 9 Unmodified _LHQSSRCQS_ 0 0 0 REV__ENST00000366577.9_1_1:236987502-236988659:+|nuORF REV__ENST00000366577.9_1_1:236987502-236988659:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 523.245815 1044.47708 1.666 0.00087171 -6.771 -0.0035429 -5.105 -0.0026712 523.2421072771914 47.734 0.33061 42.5 42.327 42.657 -5.2339 -0.095266 -0.00048142 NaN 16.942 37 19 2 NaN NaN NaN NaN 0 NaN NaN 0 25132000 + 32406 25956 21494 21905 -0.04338316759208283 LHRAPGFG 8 Unmodified _LHRAPGFG_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2417907714844 2 427.735212 853.455871 0.071622 3.0635E-05 -3.0903 -0.0013218 -3.0187 -0.0012912 427.7335977659524 64.484 0.24202 64.484 64.345 64.587 0 13 11 2 0 0 0 8.7369 1 35981 35981 2.8892 0.58649 1 702060 32407 2175 21495 21906 38204 38204 0.02328085994236062 LHRCNKLT 8 Unmodified _LHRCNKLT_ 0 0 0 REV__ENSG00000155096|ENST00000337198|AZIN1 REV__ENSG00000155096|ENST00000337198|AZIN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.2983093261719 2 492.774011 983.533469 1.222 0.00060216 -0.89267 -0.00043988 0.3293 0.00016227 492.7735978958865 63.037 0.24354 56.862 56.653 56.896 -6.1757 20 11 2 0 0 0 8.7369 1 40666 40666 9.3474 0 1 16316000 + 32408 21259 21496 21907 38205 38205 0.041043558680939896 LHRCRKWLH 9 Unmodified _LHRCRKWLH_ 0 0 0 REV__nc|ENSG00000099866|Q13477-2|MADCAM1 REV__nc|ENSG00000099866|Q13477-2|MADCAM1 MSMS AL20221201_MKP_PDAC_01 4 624.8497314453125 2 624.848376 1247.6822 NaN NaN NaN NaN NaN NaN NaN 18.417 1 15.796 15.296 16.296 -2.6215 0 0 0 0.84564 1 9698 9698 2.0598 0.21551 1 + 32409 17988 21497 21908 38206 38206 0.06826506561651513 LHRDVLDY 8 Unmodified _LHRDVLDY_ 0 0 0 REV__ENSG00000071243|ENST00000315870|ING3 REV__ENSG00000071243|ENST00000315870|ING3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7720336914062 2 515.769448 1029.52434 NaN NaN NaN NaN NaN NaN NaN 65.706 1 65.706 65.206 66.206 7.6294E-06 0 0 0 0.83301 1 36022 36022 21.747 0.87544 1 + 32410 17493 21498 21909 38207 38207 0.010762857834379247 LHRILVVDWD 10 Unmodified _LHRILVVDWD_ 0 0 0 nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10;ENST00000488270.1_1_22:50688062-50688643:-|nuORF;ENST00000483222.5_1_22:50687938-50689256:-|nuORF;ENST00000429374.5_1_22:50686861-50689256:-|nuORF;ENST00000496909.5_1_22:50687618-50689256:-|nuORF;ENST00000497036.5_1_22:50687618-50688730:-|nuORF;ENST00000498366.5_1_22:50686861-50689256:-|nuORF;nc|ENSG00000100429|Q969S8-5|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 nc|ENSG00000100429|Q969S8-2|HDAC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3553466796875 2 633.35368 1264.69281 NaN NaN NaN NaN NaN NaN NaN 102.8 1 102.8 102.3 103.3 0 0 0 0 1.0024 1 56681 56681 0.40072 0.050084 1 32411 1827 21499 21910 38208 38208 0.07104767697092029 LHRKHRLHAVL 11 Unmodified _LHRKHRLHAVL_ 0 0 0 ENST00000467525.5_2_1:161479802-161487805:+|nuORF ENST00000467525.5_2_1:161479802-161487805:+|nuORF ENST00000467525.5_2_1:161479802-161487805:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.4298706054688 2 690.428379 1378.8422 1.3218 0.00091259 0.7793 0.00053805 2.1011 0.0014506 690.4289038435574 105.59 0.26334 99.414 99.313 99.576 -6.1757 34 20 2 0 0 0 0.74203 1 70739 70739 0.30703 0.30703 1 14359000 32412 13782 21500 21911 38209 38209 0.1679375783037358 LHRKVLLIFQ 10 Unmodified _LHRKVLLIFQ_ 0 0 0 ENST00000585141.5_1_17:62481823-62493086:-|nuORF ENST00000585141.5_1_17:62481823-62493086:-|nuORF ENST00000585141.5_1_17:62481823-62493086:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.9086303710938 2 633.905882 1265.79721 NaN NaN NaN NaN NaN NaN NaN 105.68 1 99.503 99.003 100 -6.1757 0 0 0 0.99248 1 70792 70792 1.4819 0.95714 1 32413 15602 21501 21912 38210 38210 0.17494514244481252 LHRPQKPR 8 Unmodified _LHRPQKPR_ 0 0 0 nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 nc|ENSG00000070047|Q9P1Y6-2|PHRF1 nc|ENSG00000070047|Q9P1Y6-2|PHRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.3153686523438 2 516.314692 1030.61483 NaN NaN NaN NaN NaN NaN NaN 18.787 1 18.787 18.287 19.287 0 0 0 0 0.97444 1 9363 9363 2.5775 1.7838 1 32414 1016 21502 21913 38211 38211 0.10074799622361752 LHRSLPEHP 9 Unmodified _LHRSLPEHP_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9;ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8 ENSG00000109436|ENST00000442267|TBC1D9;ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1085.909423828125 1 1085.58505 1084.57778 0.48411 0.00052555 -1.531 -0.001662 -1.0469 -0.0011365 1086.5855893949667 47.65 0.08371 47.297 47.244 47.328 -0.3526 5 3 2 0 0 0 0.21798 1 25554 25554 2.3027 0 1 1278300 32415 2647;10314 21503 21914 38212 38212 0.03887083285940207 LHRTPAGQPL 10 Unmodified _LHRTPAGQPL_ 0 0 0 ENST00000586582.5_1_19:4544405-4546235:-|nuORF ENST00000586582.5_1_19:4544405-4546235:-|nuORF ENST00000586582.5_1_19:4544405-4546235:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8770751953125 3 363.876969 1088.60908 0.88202 0.00032095 0.41289 0.00015024 1.2949 0.00047119 363.87728266601573 26.23 0.38657 23.279 23.094 23.481 -2.9511 35 21 2 0 0 0 0.63089 1 14511 14511 9.544 0.16085 1 12293000 32416 15624 21504 21915 38213 38213 0.06831656320036927 LHRWRQYRSYE 11 Unmodified _LHRWRQYRSYE_ 0 0 0 REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1 REV__nc|ENSG00000174574|Q9H9L7-2|AKIRIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 797.4053955078125 2 797.405298 1592.79604 -0.62077 -0.00049501 0.90564 0.00072216 0.28487 0.00022716 797.4063680450379 33.994 0.1982 33.803 33.718 33.917 -0.19131 15 7 3 0 0 0 0.72952 1 17756 17756 1.4819 1.4819 1 918120 + 32417 22801 21505 21916 38214 38214 0.023356481376140437 LHSADNRWGI 10 Unmodified _LHSADNRWGI_ 0 0 0 REV__nc|ENSG00000259207|P05106-2|ITGB3 REV__nc|ENSG00000259207|P05106-2|ITGB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5392150878906 3 390.200111 1167.5785 1.3882 0.00054168 1.5528 0.00060591 2.941 0.0011476 390.200005679133 19.693 0.42991 17.037 16.845 17.275 -2.6564 65 31 3 0 0 0 0.42068 1 10375 10375 12.873 0 1 16618000 + 32418 24571 21506 21917 38215 38215 0.0014187793499331747 LHSASTKS 8 Unmodified _LHSASTKS_ 0 0 0 ENST00000309890.11_1_17:3827865-3828672:-|nuORF ENST00000309890.11_1_17:3827865-3828672:-|nuORF ENST00000309890.11_1_17:3827865-3828672:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.7219543457031 2 415.721967 829.429381 NaN NaN NaN NaN NaN NaN NaN 44.233 1 44.211 43.711 44.711 -0.022064 0 0 0 0.97444 1 23731 23731 2.8892 0 1 32419 11667 21507 21918 38216 38216 0.007843523122346596 LHSDLERH 8 Unmodified _LHSDLERH_ 0 0 0 ENSG00000151005|ENST00000280605|TKTL2 ENSG00000151005|ENST00000280605|TKTL2 ENSG00000151005|ENST00000280605|TKTL2 MSMS AL20221201_MKP_PDAC_01 4 503.7588500976562 2 503.756872 1005.49919 NaN NaN NaN NaN NaN NaN NaN 33.779 1 29.793 29.293 30.293 -3.9853 0 0 0 0.90769 1 19401 19401 18.135 2.2878 1 32420 6084 21508 21919 38217 38217 -0.0033376901915289636 LHSFLPAA 8 Unmodified _LHSFLPAA_ 0 0 0 ENST00000527156.1_3_1:90309067-90309214:+|nuORF ENST00000527156.1_3_1:90309067-90309214:+|nuORF ENST00000527156.1_3_1:90309067-90309214:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2398071289062 2 428.239796 854.465038 0.50194 0.00021495 -1.4036 -0.00060106 -0.90162 -0.00038611 428.23920445639357 46.361 0.23094 46.025 45.881 46.112 -0.33664 22 11 3 0 0 0 0.6895 1 24792 24792 18.135 18.135 1 9720600 32421 14830 21509 21920 38218 38218 0.03198434559908492 LHSFPTHF 8 Unmodified _LHSFPTHF_ 0 0 0 REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2486877441406 2 493.248152 984.481751 1.2045 0.00059413 -0.78917 -0.00038926 0.41535 0.00020487 493.24768919082845 21.328 0.45152 18.593 18.411 18.863 -2.7348 112 38 4 0 0 0 0.17994 3 11333 11333;11446;11560 77.984 17.595 1 98709000 + 32422 24044 21510 21921 38219;38220;38221 38219 -0.01111064554152108 LHSFPTHF 8 Unmodified _LHSFPTHF_ 0 0 0 REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.248152 984.481751 -0.36933 -0.00018217 0.64537 0.00031833 0.27604 0.00013616 493.2486227669989 18.73 0.086748 18.753 18.704 18.79 0.023106 0.080047 0.0012008 NaN 77.984 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 283450 + 32423 24044 21510 21921 -0.01111064554152108 LHSFPTHF 8 Unmodified _LHSFPTHF_ 0 0 0 REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF REV__ENST00000464583.5_1_6:4119386-4125894:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 493.248152 984.481751 1.2045 0.00059413 -0.78917 -0.00038926 0.41535 0.00020487 493.24768919082845 21.328 0.45152 18.593 18.411 18.863 -2.7348 -0.080047 -0.00021434 NaN 77.984 112 38 4 NaN NaN NaN NaN 0 NaN NaN 0 98709000 + 32424 24044 21510 21921 -0.01111064554152108 LHSIFFTQI 9 Unmodified _LHSIFFTQI_ 0 0 0 nc|ENSG00000173040|Q86UK5-3|EVC2;nc|ENSG00000173040|Q86UK5-2|EVC2;ENSG00000173040|ENST00000344408|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 MSMS AL20221201_MKP_PDAC_01 4 553.3033447265625 2 553.305667 1104.59678 NaN NaN NaN NaN NaN NaN NaN 31.625 1 27.929 27.429 28.429 -3.6958 0 0 0 0.065563 1 17926 17926 52.268 0 1 32425 16386 21511 21922 38222 38222 0.048666198569890184 LHSIPTSGIG 10 Unmodified _LHSIPTSGIG_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7926025390625 2 491.271824 980.529095 0.43796 0.00021516 0.89217 0.0004383 1.3301 0.00065346 491.27213992354115 58.246 0.18142 57.756 57.658 57.839 -0.49079 19 8 3 0 0 0 0.19561 1 31645 31645 30.637 7.4881 1 1507400 32426 2174 21512 21923 38223 38223 0.038051699261814065 LHSLCSFRKF 10 Unmodified _LHSLCSFRKF_ 0 0 0 REV__ENST00000533220.1_1_11:58907440-58910200:-|nuORF REV__ENST00000533220.1_1_11:58907440-58910200:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5552062988281 3 413.221859 1236.64375 -0.1147 -4.7397E-05 -2.3167 -0.00095733 -2.4314 -0.0010047 413.2209802794128 29.307 0.18047 29.337 29.204 29.384 0.030106 18 7 3 0 0 0 0.44171 1 15279 15279 12.856 4.4116 1 10098000 + 32427 28476 21513 21924 38224 38224 0.034891561364702284 LHSLCSFRKF 10 Unmodified _LHSLCSFRKF_ 0 0 0 REV__ENST00000533220.1_1_11:58907440-58910200:-|nuORF REV__ENST00000533220.1_1_11:58907440-58910200:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.221859 1236.64375 -0.1147 -4.7397E-05 -2.3167 -0.00095733 -2.4314 -0.0010047 413.2209802794128 29.307 0.18047 29.337 29.204 29.384 0.030106 0 0 NaN 12.856 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 10098000 + 32428 28476 21513 21924 0.034891561364702284 LHSLPLAL 8 Unmodified _LHSLPLAL_ 0 0 0 ENST00000449707.5_1_2:219507052-219507328:-|nuORF ENST00000449707.5_1_2:219507052-219507328:-|nuORF ENST00000449707.5_1_2:219507052-219507328:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.5576782226562 2 432.271096 862.527639 NaN NaN NaN NaN NaN NaN NaN 45.153 1 40.301 39.801 40.801 -4.852 0 0 0 0.88073 1 27668 27668 19.439 4.8573 1 32429 13504 21514 21925 38225 38225 0.09087580628079195 LHSPIGNPHTF 11 Unmodified _LHSPIGNPHTF_ 0 0 0 REV__ENST00000295133.9_1_2:73483309-73483504:-|nuORF REV__ENST00000295133.9_1_2:73483309-73483504:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.3222045898438 2 610.314554 1218.61456 1.292 0.00078852 0.45978 0.00028061 1.7518 0.0010691 610.3138897207172 98.386 0.21165 92.21 92.042 92.253 -6.1757 17 13 3 0 0 0 0.27394 1 65184 65184 21.537 3.3906 1 15683000 + 32430 25260 21515 21926 38226 38226 0.013993351118415376 LHSPLGGYNS 10 Unmodified _LHSPLGGYNS_ 0 0 0 nc|ENSG00000164651|Q8IXZ3-2|SP8;nc|ENSG00000164651|Q8IXZ3-1|SP8;nc|ENSG00000164651|Q8IXZ3|SP8;ENSG00000164651|ENST00000418710|SP8 nc|ENSG00000164651|Q8IXZ3-2|SP8 nc|ENSG00000164651|Q8IXZ3-2|SP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7599487304688 2 522.759081 1043.50361 -0.070108 -3.665E-05 -0.19941 -0.00010424 -0.26952 -0.00014089 522.7594965022687 54.603 0.71662 54.137 53.882 54.599 -0.46664 83 36 4 0 0 0 0.44373 1 29550 29550 19.257 2.3147 1 23759000 32431 7222 21516 21927 38227 38227 -0.01640304596230635 LHSPLHTPR 9 Unmodified _LHSPLHTPR_ 0 0 0 nc|ENSG00000160469|Q8TDC3-2|BRSK1;ENSG00000160469|ENST00000309383|BRSK1 nc|ENSG00000160469|Q8TDC3-2|BRSK1 nc|ENSG00000160469|Q8TDC3-2|BRSK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7720336914062 2 529.298707 1056.58286 0.31718 0.00016788 -0.51727 -0.00027379 -0.20009 -0.00010591 529.2982662251687 65.504 0.23003 65.504 65.394 65.624 0 15 8 2 0 0 0 0.18521 1 36545 36545 16.942 3.4344 1 921340 32432 6731 21517 21928 38228 38228 0.056833871485423515 LHSPNVGALH 10 Unmodified _LHSPNVGALH_ 0 0 0 REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.783447265625 2 522.78289 1043.55123 -0.23357 -0.00012211 0.15508 8.1075E-05 -0.078487 -4.1032E-05 522.7830795725648 31.07 0.24884 31.1 30.925 31.174 0.030104 26 10 4 0 0 0 0.074936 1 16229 16229 52.268 4.5197 1 6504600 + 32433 27701 21518 21929 38229 38229 0.031193943946163927 LHSPNVGALH 10 Unmodified _LHSPNVGALH_ 0 0 0 REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.782470703125 2 522.78289 1043.55123 1.0662 0.00055741 -0.0042125 -2.2022E-06 1.062 0.00055521 522.7828734102172 34.965 0.52333 30.87 30.581 31.105 -4.0951 94 30 4 0 0 0 0.02987 2 20349 20101;20349 68.081 2.8457 1 228460000 + 32434 27701 21518 21929 38230;38231 38231 0.031193943946163927 LHSPRSFSRVC 11 Unmodified _LHSPRSFSRVC_ 0 0 0 REV__ENSG00000142528|ENST00000270617|ZNF473 REV__ENSG00000142528|ENST00000270617|ZNF473 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2244262695312 3 430.224151 1287.65062 0.14685 6.3178E-05 0.61747 0.00026565 0.76432 0.00032883 430.2244206409464 78.088 0.29413 78.088 77.878 78.172 0 24 12 2 0 0 0 0.71036 1 43372 43372 1.3296 0 1 1904800 + 32435 20577 21519 21930 38232 38232 0.01830469017068026 LHSPSEPLFD 10 Unmodified _LHSPSEPLFD_ 0 0 0 REV__ENST00000519756.1_2_10:102732774-102738941:+|nuORF REV__ENST00000519756.1_2_10:102732774-102738941:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.1901550292969 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 89.541 1 83.365 82.865 83.865 -6.1757 0 0 0 0.88176 1 59111 59111 5.0475 1.1712 1 + 32436 28266 21520 21931 38233 38233 -0.019511686275791362 LHSRFFFFY 9 Unmodified _LHSRFFFFY_ 0 0 0 REV__ENST00000341423.9_1_13:31031046-31031178:-|nuORF REV__ENST00000341423.9_1_13:31031046-31031178:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8844604492188 3 421.881831 1262.62366 0.83532 0.00035241 3.4661 0.0014623 4.3014 0.0018147 421.88313622561134 46.189 0.29163 41.234 41.064 41.355 -4.9549 30 19 2 0 0 0 0.39863 1 28573 28573 8.1555 1.9637 1 24348000 + 32437 25707 21521 21932 38234 38234 0.0028572846820225095 LHSRQSDTDM 10 Unmodified _LHSRQSDTDM_ 0 0 0 REV__nc|ENSG00000107263|Q13905|RAPGEF1 REV__nc|ENSG00000107263|Q13905|RAPGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2664184570312 2 595.266944 1188.51934 0.94314 0.00056142 -0.067834 -4.0379E-05 0.87531 0.00052104 595.2669921541375 50.593 0.36631 50.18 49.992 50.358 -0.41351 45 17 3 0 0 0 0.29752 1 27195 27195 27.629 4.8925 1 24724000 + 32438 29557 21522 21933 38235 38235 -0.06738386141500996 LHSRQSDTDM 10 Unmodified _LHSRQSDTDM_ 0 0 0 REV__nc|ENSG00000107263|Q13905|RAPGEF1 REV__nc|ENSG00000107263|Q13905|RAPGEF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.266944 1188.51934 0.94314 0.00056142 -0.067834 -4.0379E-05 0.87531 0.00052104 595.2669921541375 50.593 0.36631 50.18 49.992 50.358 -0.41351 -0.0025211 -6.8904E-05 NaN 27.629 45 17 3 NaN NaN NaN NaN 0 NaN NaN 0 24724000 + 32439 29557 21522 21933 -0.06738386141500996 LHSSTLWAL 9 Unmodified _LHSSTLWAL_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.27587890625 2 514.282192 1026.54983 NaN NaN NaN NaN NaN NaN NaN 38.731 1 38.731 38.231 39.231 0 0 0 0 0.36554 1 20707 20707 21.747 1.293 1 32440 10920 21523 21934 38236 38236 0.03761760305860662 LHSSVKMV 8 Unmodified _LHSSVKMV_ 0 0 0 ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276919-202277543:-|nuORF ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2558288574219 2 450.752213 899.489873 0.52805 0.00023802 1.4016 0.00063179 1.9297 0.00086981 450.7529765887864 77.022 0.43216 77.072 76.889 77.321 0.05011 49 17 4 0 0 0 0.78849 1 42498 42498 9.3474 0.75416 1 4010000 32441 4776 21524 21935 38237 38237 0.03610746370986817 LHSVPLSRDIP 11 Unmodified _LHSVPLSRDIP_ 0 0 0 ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM ENSG00000164318|ENST00000322350|EGFLAM ENSG00000164318|ENST00000322350|EGFLAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8491821289062 2 617.351137 1232.68772 0.521 0.00032164 -2.2106 -0.0013647 -1.6896 -0.0010431 617.3497793940871 48.768 0.19836 48.724 48.555 48.753 -0.04369 12 9 2 0 0 0 0.30217 1 26323 26323 5.2969 1.3525 1 2197400 32442 7179 21525 21936 38238 38238 0.08068463834479189 LHTAASIDQYE 11 Unmodified _LHTAASIDQYE_ 0 0 0 ANKS3|p.G46D|1|0.15|ENSG00000168096|chr16:4730013-4730013|C/T|missense_variant ANKS3|p.G46D|1|0.15|ENSG00000168096|chr16:4730013-4730013|C/T|missense_variant ANKS3|p.G46D|1|0.15|ENSG00000168096|chr16:4730013-4730013|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 416.5359497070312 3 416.534937 1246.58298 NaN NaN NaN NaN NaN NaN NaN 98.436 1 92.26 91.76 92.76 -6.1757 0 0 0 0.93224 1 65290 65290 2.6312 0 1 32443 29 21526 21937 38239 38239 -0.030447024327258987 LHTAGPTF 8 Unmodified _LHTAGPTF_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5553894042969 2 422.221603 842.428653 NaN NaN NaN NaN NaN NaN NaN 45.38 1 45.352 44.852 45.852 -0.028011 0 0 0 0.95607 1 24376 24376 9.3474 0.75416 1 32444 3009 21527 21938 38240 38240 0.001135576631895674 LHTCFDTLL 9 Unmodified _LHTCFDTLL_ 0 0 0 REV__ENST00000511891.5_1_4:83956377-83970479:+|nuORF REV__ENST00000511891.5_1_4:83956377-83970479:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 531.7669067382812 2 531.76806 1061.52157 NaN NaN NaN NaN NaN NaN NaN 40.733 1 36.203 35.703 36.703 -4.5294 0 0 0 0.20498 1 24362 24362 30.225 1.738 1 + 32445 20352 21528 21939 38241 38241 -0.006733056657367342 LHTGEKPYI 9 Unmodified _LHTGEKPYI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000204920|ENST00000270014|ZNF155 ENSG00000204920|ENST00000270014|ZNF155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.194091796875 3 353.194075 1056.5604 -0.74065 -0.00026159 1.0648 0.00037609 0.32418 0.0001145 353.1944911963775 28.15 0.1734 28.15 28.057 28.231 0 14 9 2 0 0 0 0.45045 1 14528 14528 6.6304 0 1 2019300 32446 10336;6678 21529 21940 38242 38242 0.034377429602727716 LHTGEKPYI 9 Unmodified _LHTGEKPYI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000204920|ENST00000270014|ZNF155 ENSG00000204920|ENST00000270014|ZNF155 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1945495605469 3 353.194075 1056.5604 1.3662 0.00048254 -0.38261 -0.00013514 0.98361 0.00034741 353.19398760320576 31.793 0.2936 28.097 28 28.293 -3.6958 27 15 3 0 0 0 0.23158 1 18092 18092 14.405 0 1 15345000 32447 10336;6678 21529 21940 38243 38243 0.034377429602727716 LHTHCSYQMM 10 Unmodified _LHTHCSYQMM_ 0 0 0 ENST00000486458.1_1_2:74077502-74087672:+|nuORF;ENSG00000124356|ENST00000394070|STAMBP ENST00000486458.1_1_2:74077502-74087672:+|nuORF ENST00000486458.1_1_2:74077502-74087672:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.30029296875 2 625.759386 1249.50422 4.3596 0.002728 -1.6479 -0.0010312 2.7117 0.0016968 626.2605014308375 98.89 0.14356 98.862 98.804 98.948 -0.028282 7 4 2 0 0 0 0.23566 1 54949 54949 7.2892 2.0586 1 1255900 32448 3779 21530 21941 38244 38244 -0.11055292534706496 LHTLLLLLL 9 Unmodified _LHTLLLLLL_ 0 0 0 REV__ENSG00000125730|ENST00000245907|C3 REV__ENSG00000125730|ENST00000245907|C3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1049.224731445312 1 1048.71288 1047.7056 -0.25259 -0.0002649 4.3116 0.0045216 4.059 0.0042567 1048.7172491385481 42.114 0.17886 41.807 41.741 41.92 -0.30682 9 8 2 0 0 0 0.21798 1 22381 22381 0.6015 0 1 18399000 + 32449 19510 21531 21942 38245 38245 0.18365830827292484 LHTLRDQHL 9 Unmodified _LHTLRDQHL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-3|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.212646484375 3 378.21224 1131.61489 0.70233 0.00026563 0.50061 0.00018934 1.2029 0.00045497 378.21235983357406 24.659 0.36176 21.776 21.598 21.959 -2.8831 28 20 2 0 0 0 0.1685 1 13439 13439 26.268 3.5319 1 6127600 32450 1249 21532 21943 38246 38246 0.05434754831708233 LHTRNYAHLLK 11 Unmodified _LHTRNYAHLLK_ 0 0 0 REV__nc|ENSG00000012171|Q13214-2|SEMA3B REV__nc|ENSG00000012171|Q13214-2|SEMA3B MSMS AL20221201_MKP_PDAC_01 4 455.9309692382812 3 455.929844 1364.7677 NaN NaN NaN NaN NaN NaN NaN 98.706 1 92.531 92.031 93.031 -6.1757 0 0 0 0.51603 1 65514 65514 23.964 0 1 + 32451 17063 21533 21944 38247 38247 0.09990950228302609 LHTSFSAPSF 10 Unmodified _LHTSFSAPSF_ 0 0 0 nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2698364257812 2 547.269281 1092.52401 0.64611 0.0003536 -0.10927 -5.9798E-05 0.53684 0.0002938 547.2691912970782 52.712 0.30361 52.649 52.522 52.826 -0.063423 33 14 3 0 0 0 0.16524 1 28550 28550 37.974 1.847 1 7378600 32452 4789 21534 21945 38248 38248 -0.018551339364194064 LHTSLPQPL 9 Unmodified _LHTSLPQPL_ 0 0 0 REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.2917785644531 2 503.290017 1004.56548 NaN NaN NaN NaN NaN NaN NaN 79.613 1 73.437 72.937 73.937 -6.1757 0 0 0 0.17247 1 52185 52185 34.102 5.0209 1 + 32453 17315 21535 21946 38249 38249 0.06338046822895649 LHTSRTQIVH 10 Unmodified _LHTSRTQIVH_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.2698364257812 2 596.333279 1190.652 0.75347 0.00044932 1.7199 0.0010256 2.4733 0.0014749 596.3344333533759 54.331 0.35868 48.466 48.283 48.641 -5.8653 34 21 2 0 0 0 0.22327 1 34374 34374 13.906 5.1606 1 14503000 32454 1587 21536 21947 38250 38250 0.06430426377460208 LHTSSPLAY 9 Unmodified _LHTSSPLAY_ 0 0 0 REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF REV__ENST00000204615.11_1_3:184090388-184093318:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.760986328125 2 494.758549 987.502546 0.57366 0.00028382 -0.43781 -0.00021661 0.13585 6.7212E-05 494.7585128003086 44.906 0.65511 40.054 39.759 40.414 -4.852 129 48 4 0 0 0 0.03327 1 27288 27288 53.576 2.7205 1 232260000 + 32455 24722 21537 21948 38251 38251 0.008294810348388637 LHVHMVPFI 9 Unmodified _LHVHMVPFI_ 0 0 0 REV__ENST00000559664.5_1_15:34629408-34629573:-|nuORF REV__ENST00000559664.5_1_15:34629408-34629573:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.279296875 2 546.80478 1091.59501 0.98661 0.00053948 -2.0174 -0.0011031 -1.0308 -0.00056367 546.8039912089387 71.851 0.17634 65.676 65.619 65.796 -6.1757 13 9 2 0 0 0 0.18941 1 47040 47040 9.3474 0.75416 1 13955000 + 32456 28818 21538 21949 38252 38252 0.0528728756739838 LHVHPVEG 8 Unmodified _LHVHPVEG_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1;nc|ENSG00000179532|Q96M86-5|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2415161132812 2 444.240327 886.466101 0.88283 0.00039219 0.83843 0.00037246 1.7213 0.00076465 444.24131383450714 58.628 0.64653 58.567 58.254 58.901 -0.060722 55 32 2 0 0 0 0.76859 1 31930 31930 11.114 3.8252 1 1922100 32457 8841 21539 21950 38253 38253 0.01832648928814251 LHVKRRRIC 9 Unmodified _LHVKRRRIC_ 0 0 0 ENSG00000151882|ENST00000361115|CCL28 ENSG00000151882|ENST00000361115|CCL28 ENSG00000151882|ENST00000361115|CCL28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8656005859375 2 590.864026 1179.7135 2.6783 0.0015825 0.40387 0.00023863 3.0822 0.0018212 590.8643009641788 97.071 0.42992 97.064 96.826 97.255 -0.007019 49 16 4 0 0 0 0.62242 2 53858 53858;53970 0 0 1 53517000 32458 6152 21540 21951 38254;38255 38254 0.13083079595776326 LHVKYNYNRF 10 Unmodified _LHVKYNYNRF_ 0 0 0 REV__nc|ENSG00000116678|P48357-5|LEPR REV__nc|ENSG00000116678|P48357-5|LEPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.9077453613281 3 451.906928 1352.69895 0.76498 0.0003457 0.69034 0.00031197 1.4553 0.00065767 451.9072258877144 18.174 0.36359 15.553 15.404 15.768 -2.6215 96 27 5 0 0 0 0.63089 1 9615 9615 9.544 0.79219 1 60609000 + 32459 19055 21541 21952 38256 38256 0.03671285928589896 LHVLLPEEF 9 Unmodified _LHVLLPEEF_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3319702148438 2 548.8055 1095.59645 1.5095 0.00082841 3.2728 0.0017961 4.7822 0.0026245 549.3073980624832 82.189 0.14981 82.251 82.197 82.347 0.062004 8 5 2 0 0 0 0.18941 1 45450 45450 14.582 3.4672 1 1692500 32460 10197 21542 21953 38257 38257 0.052472001371370425 LHVLVLLKL 9 Unmodified _LHVLVLLKL_ 0 0 0 REV__ENST00000426595.1_1_7:55979573-55979666:+|nuORF REV__ENST00000426595.1_1_7:55979573-55979666:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1048.223999023438 1 1047.72886 1046.72159 1.0403 0.0010899 3.7964 0.0039776 4.8367 0.0050675 1048.7354014322639 53.9 0.17468 48.059 47.989 48.163 -5.8411 12 10 2 0 0 0 0.21889 1 34152 34152 0.6015 0 1 15928000 + 32461 26909 21543 21954 38258 38258 0.20009537064174765 LHVPSQLLL 9 Unmodified _LHVPSQLLL_ 0 0 0 REV__ENST00000607412.1_1_2:215826578-215826698:+|nuORF REV__ENST00000607412.1_1_2:215826578-215826698:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3168029785156 2 510.316035 1018.61752 1.0662 0.00054409 0.11085 5.6567E-05 1.177 0.00060066 510.3162014650823 94.272 0.6217 88.097 87.823 88.445 -6.1757 109 35 4 0 0 0 0.019303 3 62437 62313;62437;62563 64.236 12.679 1 66626000 + 32462 29315 21544 21955 38259;38260;38261 38260 0.1089521023668567 LHVPWREL 8 Unmodified _LHVPWREL_ 0 0 0 REV__nc|ENSG00000068976|P11217-2|PYGM REV__nc|ENSG00000068976|P11217-2|PYGM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.5330505371094 3 350.534543 1048.5818 NaN NaN NaN NaN NaN NaN NaN 19.148 1 19.171 18.671 19.671 0.023106 0 0 0 0.97444 1 9641 9641 1.8442 0.19162 1 + 32463 17444 21545 21956 38262 38262 0.05945172779661334 LHVQLQTLF 9 Unmodified _LHVQLQTLF_ 0 0 0 ENST00000341744.7_2_20:56227391-56284786:-|nuORF ENST00000341744.7_2_20:56227391-56284786:-|nuORF ENST00000341744.7_2_20:56227391-56284786:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8829956054688 3 366.88172 1097.62333 1.3712 0.00050306 0.13509 4.9564E-05 1.5063 0.00055262 366.8818644546951 36.252 0.33248 32.059 31.82 32.152 -4.1928 42 19 3 0 0 0 0.19127 1 21072 21072 17.443 3.8278 1 15036000 32464 11972 21546 21957 38263 38263 0.07842308748331561 LHVTLTAPSF 10 Unmodified _LHVTLTAPSF_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3033447265625 2 543.303124 1084.5917 0.23687 0.00012869 0.0019887 1.0805E-06 0.23886 0.00012977 543.3039025921483 53.061 0.2172 52.997 52.919 53.136 -0.063423 16 10 2 0 0 0 0.33553 1 28783 28783 25.399 4.9457 1 2226200 + 32465 18573 21547 21958 38264 38264 0.05278315994382865 LHVYGVGV 8 Unmodified _LHVYGVGV_ 0 0 0 nc|ENSG00000163704|Q5FWE3-2|PRRT3;ENSG00000163704|ENST00000412055|PRRT3 nc|ENSG00000163704|Q5FWE3-2|PRRT3 nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5361633300781 2 422.239796 842.465038 -0.5976 -0.00025233 1.1659 0.00049227 0.56825 0.00023994 422.24013400910366 26.785 0.25151 26.785 26.679 26.93 0 16 11 2 0 0 0 8.7369 1 13848 13848 0.79363 0 1 884140 32466 7055 21548 21959 38265 38265 0.03750434559913174 LHWAGQTLA 9 Unmodified _LHWAGQTLA_ 0 0 0 nc|ENSG00000174151|Q8N8Q1-5|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;ENST00000430195.2_1_1:110037168-110038878:+|nuORF;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1 nc|ENSG00000174151|Q8N8Q1-5|CYB561D1 nc|ENSG00000174151|Q8N8Q1-5|CYB561D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7693176269531 2 498.766709 995.518865 4.2804 0.0021349 2.4125 0.0012033 6.6929 0.0033382 498.76791449699346 99.231 0.13818 99.202 99.108 99.246 -0.028282 7 4 2 0 0 0 0.46577 1 55133 55133 9.3474 2.0582 1 1696200 32467 8395 21549 21960 38266 38266 0.020926069916185952 LHWDHDYLE 9 Unmodified _LHWDHDYLE_ 0 0 0 nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;nc|ENSG00000166311|P17405-3|SMPD1;nc|ENSG00000166311|P17405-2|SMPD1 nc|ENSG00000166311|P17405-4|SMPD1 nc|ENSG00000166311|P17405-4|SMPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8523864746094 3 409.852489 1226.53564 0.91274 0.00037409 -1.9685 -0.00080681 -1.0558 -0.00043272 409.851740106312 101.6 0.15222 95.427 95.351 95.503 -6.1757 14 7 3 0 0 0 0.5029 1 68202 68202 4.5289 2.0941 1 11688000 32468 7468 21550 21961 38267 38267 -0.06856936913095524 LHWFKEEFFHW 11 Unmodified _LHWFKEEFFHW_ 0 0 0 nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1;ENST00000493324.5_1_3:25778798-25824881:-|nuORF;nc|ENSG00000151092|Q96IV0-5|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 nc|ENSG00000151092|Q96IV0-3|NGLY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.4478149414062 4 402.196394 1604.75647 -0.45956 -0.00018483 1.0404 0.00041843 0.5808 0.0002336 402.196900040633 85.938 0.50234 86 85.905 86.407 0.061646 39 31 2 0 0 0 0.74429 1 47591 47591 0.094841 0 1 83755000 32469 6089 21551 21962 38268 38268 -0.021718718658348735 LHWHAVPY 8 Unmodified _LHWHAVPY_ 0 0 0 REV__ENSG00000135763|ENST00000258243|URB2 REV__ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7635192871094 2 511.763969 1021.51339 0.28584 0.00014628 -0.31074 -0.00015903 -0.024906 -1.2746E-05 511.7636667789296 92.983 0.26118 92.983 92.87 93.132 0 21 16 2 0 0 0 0.80975 1 51389 51389 0.79363 0 1 229450 + 32470 20097 21552 21963 38269 38269 0.003489281997985927 LHWLGIKLN 9 Unmodified _LHWLGIKLN_ 0 0 0 ENST00000567661.5_1_1:158985577-158985661:+|nuORF ENST00000567661.5_1_1:158985577-158985661:+|nuORF ENST00000567661.5_1_1:158985577-158985661:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 547.3329467773438 2 547.329476 1092.6444 NaN NaN NaN NaN NaN NaN NaN 109.61 1 103.44 102.94 103.94 -6.1757 0 0 0 0.84564 1 73196 73196 2.0598 1.2661 1 32471 15444 21553 21964 38270 38270 0.10178318847852097 LHWLHIHFP 9 Unmodified _LHWLHIHFP_ 0 0 0 ENST00000308020.5_1_11:490638-491184:+|nuORF ENST00000308020.5_1_11:490638-491184:+|nuORF ENST00000308020.5_1_11:490638-491184:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.219482421875 3 400.553937 1198.63998 0.12075 4.8366E-05 -0.0059564 -2.3859E-06 0.11479 4.5981E-05 400.5537996300184 62.455 0.27717 62.429 62.298 62.575 -0.026546 16 14 2 0 0 0 0.21302 1 34083 34083 5.7319 2.7366 1 7211500 32472 11648 21554 21965 38271 38271 0.048608544249191254 LHWVEFQNKF 10 Unmodified _LHWVEFQNKF_ 0 0 0 nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1;ENST00000543687.1_1_12:124241315-124242576:+|nuORF;ENST00000588806.1_1_17:40665776-40673135:+|nuORF;ENSG00000105929|ENST00000310018|ATP6V0A4;ENSG00000185344|ENST00000330342|ATP6V0A2;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000110719|Q13488-2|TCIRG1;ENST00000533005.5_1_11:67811756-67818283:+|nuORF;nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.3455200195312 2 674.345855 1346.67716 -0.022076 -1.4887E-05 -0.010314 -6.955E-06 -0.03239 -2.1842E-05 674.3461106134841 86.494 0.22697 86.494 86.358 86.585 0 22 10 3 0 0 0 0.69377 1 47882 47882 3.5965 0.60125 1 662340 32473 2736;14933;602 21555 21966 38272 38272 0.01768481180033632 LHYAAANG 8 Unmodified _LHYAAANG_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7034606933594 2 408.703577 815.392602 -0.077953 -3.186E-05 -0.13121 -5.3625E-05 -0.20916 -8.5485E-05 408.7034778053168 46.912 0.5994 46.912 46.74 47.339 0 66 28 3 0 0 0 0.77907 1 25615 25615 10.183 0.83596 1 50935000 32474 5176 21556 21967 38273 38273 -0.022478995136793856 LHYDFEYIKNF 11 Unmodified _LHYDFEYIKNF_ 0 0 0 REV__nc|ENSG00000177302|Q13472-2|TOP3A REV__nc|ENSG00000177302|Q13472-2|TOP3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.910400390625 3 496.910115 1487.70852 NaN NaN NaN NaN NaN NaN NaN 18.769 1 18.769 18.269 19.269 0 0 0 0 0.93954 1 9353 9353 2.8433 1.5136 1 + 32475 22976 21557 21968 38274 38274 -0.01582990576548582 LHYFHDRF 8 Unmodified _LHYFHDRF_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3035888671875 2 567.777608 1133.54066 0.67238 0.00038176 1.904 0.0010811 2.5764 0.0014628 567.7787895977601 84.427 0.28911 83.928 83.753 84.042 -0.49961 28 12 3 0 0 0 8.7369 1 46129 46129 2.5775 0.27475 1 1564900 32476 6354 21558 21969 38275 38275 -0.020765882598198004 LHYIDFLSR 9 Unmodified _LHYIDFLSR_ 0 0 0 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5450134277344 3 388.545108 1162.61349 0.15522 6.031E-05 -0.029302 -1.1385E-05 0.12592 4.8925E-05 388.5450826611826 56.597 0.46034 56.528 56.36 56.82 -0.068741 73 22 5 0 0 0 0.16019 2 30737 30737;30841 27.088 1.091 1 157510000 + 32477 24457 21559 21970 38276;38277 38276 0.03869120742933774 LHYIDFLSR 9 Unmodified _LHYIDFLSR_ 0 0 0 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.545108 1162.61349 0.15522 6.031E-05 -0.029302 -1.1385E-05 0.12592 4.8925E-05 388.5450826611826 56.597 0.46034 56.528 56.36 56.82 -0.068741 0.046011 -0.00014407 NaN 27.088 73 22 5 NaN NaN NaN NaN 0 NaN NaN 0 157510000 + 32478 24457 21559 21970 0.03869120742933774 LHYKKEVSV 9 Unmodified _LHYKKEVSV_ 0 0 0 MCOLN3|p.S332F|1|0.11|ENSG00000055732|chr1:85026039-85026039|G/A|missense_variant;ENST00000370587.5_1_1:85491576-85491813:-|nuORF;ENST00000475312.1_1_1:85491576-85494918:-|nuORF;nc|ENSG00000055732|Q8TDD5-2|MCOLN3;ENSG00000055732|ENST00000370589|MCOLN3 MCOLN3|p.S332F|1|0.11|ENSG00000055732|chr1:85026039-85026039|G/A|missense_variant MCOLN3|p.S332F|1|0.11|ENSG00000055732|chr1:85026039-85026039|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8781127929688 3 368.213358 1101.61824 NaN NaN NaN NaN NaN NaN NaN 26.094 1 26.121 25.621 26.621 0.026951 0 0 0 0.71962 1 13528 13528 8.7454 0.83525 1 32479 779 21560 21971 38278 38278 0.07150004885693306 LHYSIARLL 9 Unmodified _LHYSIARLL_ 0 0 0 REV__ENSG00000136270|ENST00000258770|TBRG4 REV__ENSG00000136270|ENST00000258770|TBRG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5545349121094 3 362.553715 1084.63931 1.4294 0.00051823 0.50199 0.000182 1.9314 0.00070023 362.55401084301093 22.24 0.63102 19.505 19.102 19.733 -2.7348 80 34 4 0 0 0 0.42049 1 11951 11951 11.495 0 1 10563000 + 32480 20153 21561 21972 38279 38279 0.10038014985229893 LHYSQELSLLY 11 Unmodified _LHYSQELSLLY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.3554077148438 2 683.356085 1364.69762 0.59511 0.00040667 -0.1942 -0.00013271 0.40091 0.00027397 683.3554602759706 82.279 0.28961 81.784 81.629 81.919 -0.4952 28 11 3 0 0 0 0.71341 1 45118 45118 2.9952 0 1 2448200 32481 10766 21562 21973 38280 38280 0.029856070492087383 LHYVLKAQAA 10 Unmodified _LHYVLKAQAA_ 0 0 0 REV__ENSG00000180660|ENST00000379919|MAB21L1 REV__ENSG00000180660|ENST00000379919|MAB21L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8866271972656 3 371.885353 1112.63423 0.47083 0.00017509 1.2108 0.00045028 1.6816 0.00062538 371.88605203000344 49.217 0.63942 48.845 48.519 49.159 -0.37172 39 31 2 0 0 0 0.60623 1 26412 26412 6.1918 0 1 5092700 + 32482 23162 21563 21974 38281 38281 0.08241711122627748 LHYVLRCSE 9 Unmodified _LHYVLRCSE_ 0 0 0 ENST00000336219.3_1_14:105476782-105476908:-|nuORF ENST00000336219.3_1_14:105476782-105476908:-|nuORF ENST00000336219.3_1_14:105476782-105476908:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.78369140625 2 560.284408 1118.55426 0.12616 7.0685E-05 -3.4319 -0.0019228 -3.3057 -0.0018522 560.2823519140558 70.689 0.50145 70.689 70.253 70.755 0 30 25 2 0 0 0 0.203 1 39339 39339 9.3474 2.0582 1 916940 32483 11907 21564 21975 38282 38282 -0.00027098542886960786 LIAEAFCL 8 Carbamidomethyl (C) _LIAEAFC(Carbamidomethyl (C))L_ LIAEAFC(1)L LIAEAFC(40)L 0 1 0 ENSG00000179477|ENST00000647874|ALOX12B ENSG00000179477|ENST00000647874|ALOX12B ENSG00000179477|ENST00000647874|ALOX12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7469787597656 2 468.746596 935.478639 0.28969 0.00013579 0.56596 0.00026529 0.85564 0.00040108 468.7470610281725 59.295 0.32094 58.804 58.625 58.946 -0.49079 25 14 2 0 0 0 0.44122 1 32241 32241 40.449 15.775 1 1189400 32484 8838 21565 21976 38283 38283 837 0.008319242768379809 LIAKHRFV 8 Unmodified _LIAKHRFV_ 0 0 0 ENST00000398117.1_1_18:60795501-60795573:-|nuORF ENST00000398117.1_1_18:60795501-60795573:-|nuORF ENST00000398117.1_1_18:60795501-60795573:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.3114013671875 2 492.311087 982.60762 0.58121 0.00028614 -1.0163 -0.00050032 -0.43506 -0.00021419 492.3105546730655 93.866 0.2448 93.446 93.325 93.57 -0.42044 17 10 2 0 0 0 0.80044 1 51257 51257 6.3541 0 1 491090 32485 12844 21566 21977 38284 38284 0.11562067021941402 LIALYKAGEL 10 Unmodified _LIALYKAGEL_ 0 0 0 nc|ENSG00000211814|P0DPF4|TRAV35 nc|ENSG00000211814|P0DPF4|TRAV35 nc|ENSG00000211814|P0DPF4|TRAV35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8274536132812 2 545.828975 1089.6434 0.20854 0.00011383 -0.51941 -0.00028351 -0.31087 -0.00016968 545.828130268733 75.707 0.25848 75.755 75.582 75.84 0.047943 28 11 3 0 0 0 0.31022 1 41727 41727 26.884 1.8927 1 4599600 32486 16533 21567 21978 38285 38285 0.10216059688286805 LIARWIRCV 9 Unmodified _LIARWIRCV_ 0 0 0 REV__ENST00000470890.1_1_1:27681884-27683265:-|nuORF REV__ENST00000470890.1_1_1:27681884-27683265:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2275390625 3 377.226944 1128.659 NaN NaN NaN NaN NaN NaN NaN 64.614 1 64.129 63.629 64.629 -0.48512 0 0 0 0.85798 1 35253 35253 0.23584 0 1 + 32487 20592 21568 21979 38286 38286 0.099820677243315 LIASYFAASF 10 Unmodified _LIASYFAASF_ 0 0 0 REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.283935546875 2 545.2844 1088.55425 0.65977 0.00035976 0.84502 0.00046077 1.5048 0.00082054 545.284969652992 66.965 0.24442 66.983 66.837 67.082 0.018028 22 11 2 0 0 0 0.2178 1 36735 36735 32.305 5.4218 1 5731400 + 32488 21646 21569 21980 38287 38287 0.013512247287508217 LIATFNLTF 9 Unmodified _LIATFNLTF_ 0 0 0 ENST00000559453.5_1_14:24615205-24615346:-|nuORF ENST00000559453.5_1_14:24615205-24615346:-|nuORF ENST00000559453.5_1_14:24615205-24615346:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.77001953125 2 520.294768 1038.57498 1.336 0.00069513 -2.9177 -0.001518 -1.5816 -0.00082292 520.2938889958363 95.407 0.27557 89.231 89.04 89.316 -6.1757 23 15 2 0 0 0 0.10661 1 63148 63148 24.021 0 1 10167000 32489 15295 21570 21981 38288 38288 0.05723815108422059 LIAVRPPV 8 Unmodified _LIAVRPPV_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2 ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MSMS AL20221201_MKP_PDAC_01 4 432.7879943847656 2 432.786913 863.559273 NaN NaN NaN NaN NaN NaN NaN 98.415 1 92.24 91.74 92.74 -6.1757 0 0 0 0.53879 1 65276 65276 38.151 6.0342 1 32490 6010 21571 21982 38289 38289 0.12203573382032573 LICEQPLTV 9 Unmodified _LICEQPLTV_ 0 0 0 REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2773742675781 2 508.27826 1014.54197 0.41664 0.00021177 -1.896 -0.0009637 -1.4794 -0.00075193 508.277328915009 74.551 0.39107 74.075 73.84 74.231 -0.47588 26 16 2 0 0 0 0.41742 1 40877 40877 11.64 0.52583 1 770780 + 32491 27889 21572 21983 38290 38290 0.035278649940664764 LICYSQICCK 10 Unmodified _LICYSQICCK_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8541259765625 3 391.853679 1172.53921 0.051277 2.0093E-05 0.12051 4.7223E-05 0.17179 6.7316E-05 391.8536398438281 61.543 0.2958 61.543 61.389 61.685 0 30 13 3 0 0 0 0.67033 1 34305 34305 3.3196 0 1 2007800 32492 7880 21573 21984 38291 38291 -0.04016049726760684 LIDDEEYEKRW 11 Unmodified _LIDDEEYEKRW_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1812438964844 4 374.682045 1494.69907 0.016698 6.2564E-06 -0.30373 -0.0001138 -0.28703 -0.00010755 374.68191031849483 14.933 0.10825 14.938 14.841 14.949 0.0057774 7 3 3 0 0 0 0.30605 1 7390 7390 0 0 1 2443400 + 32493 20252 21574 21985 38292 38292 -0.028488036527505756 LIDGAIPRI 9 Unmodified _LIDGAIPRI_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2999877929688 2 484.300384 966.586216 NaN NaN NaN NaN NaN NaN NaN 56.133 1 56.064 55.564 56.564 -0.068737 0 0 0 0.41346 1 30523 30523 19.257 2.3147 1 + 32494 22894 21575 21986 38293 38293 0.10158637202562204 LIDGDSLLI 9 Unmodified _LIDGDSLLI_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7767028808594 2 479.776408 957.538263 0.26531 0.00012729 0.03843 1.8438E-05 0.30374 0.00014573 479.77637789492746 89.918 0.41666 89.918 89.746 90.163 0 79 30 3 0 0 0 0.25297 1 49703 49703 19.439 1.304 1 2931300 32495 4951 21576 21987 38294 38294 0.057795184918632 LIDGFEALLLQ 11 Unmodified _LIDGFEALLLQ_ 0 0 0 REV__ENSG00000215853|ENST00000316073|RPTN REV__ENSG00000215853|ENST00000316073|RPTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3506469726562 2 616.350271 1230.68599 0.63621 0.00039213 0.89151 0.00054948 1.5277 0.00094161 616.3508863174378 85.129 0.3625 84.628 84.409 84.772 -0.5015 48 18 3 0 0 0 0.557 1 46607 46607 22.736 11.242 1 2889900 + 32496 24347 21577 21988 38295 38295 0.07987410025862118 LIDKEEMED 9 Unmodified _LIDKEEMED_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3087158203125 2 561.255179 1120.49581 0.26338 0.00014782 1.6293 0.00091447 1.8927 0.0010623 561.2567394169461 65.234 0.22746 65.234 65.093 65.32 0 11 8 2 0 0 0 0.18482 1 36349 36349 18.146 4.2403 1 549490 + 32497 21267 21578 21989 38296 38296 -0.059622446986850264 LIDKYSYY 8 Unmodified _LIDKYSYY_ 0 0 0 ENST00000433477.3_1_4:156845437-156845545:-|nuORF ENST00000433477.3_1_4:156845437-156845545:-|nuORF ENST00000433477.3_1_4:156845437-156845545:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2938842773438 2 532.768583 1063.52261 0.64234 0.00034222 -1.6838 -0.00089706 -1.0414 -0.00055484 532.7669512851402 73.821 0.28577 73.345 73.144 73.43 -0.47588 25 13 3 0 0 0 8.7369 1 40309 40309 14.582 1.5392 1 2234600 32498 13291 21579 21990 38297 38297 -0.006607680252045611 LIDLLPLKELI 11 Unmodified _LIDLLPLKELI_ 0 0 0 REV__BPIFA1|p.N70K|1|0.18|ENSG00000198183|chr20:33238104-33238104|C/A|missense_variant REV__BPIFA1|p.N70K|1|0.18|ENSG00000198183|chr20:33238104-33238104|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 427.2801208496094 3 427.279368 1278.81628 NaN NaN NaN NaN NaN NaN NaN 109.45 1 103.28 102.78 103.78 -6.1757 0 0 0 0.9435 1 73097 73097 0 0 1 + 32499 16748 21580 21991 38298 38298 0.1880200602486184 LIDLYITTL 9 Unmodified _LIDLYITTL_ 0 0 0 REV__ENST00000303052.12_2_15:64592761-64592794:-|nuORF REV__ENST00000303052.12_2_15:64592761-64592794:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8157958984375 2 532.815533 1063.61651 0.39882 0.0002125 -0.050548 -2.6933E-05 0.34827 0.00018556 532.8151568750017 89.213 0.31927 88.709 88.543 88.862 -0.50423 28 13 3 0 0 0 0.37804 1 48757 48757 13.508 0 1 767880 + 32500 25347 21581 21992 38299 38299 0.08724951077078913 LIDQIPLR 8 Unmodified _LIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2998657226562 2 484.300384 966.586216 -0.77273 -0.00037423 0.20495 9.9258E-05 -0.56778 -0.00027498 484.3004660505444 56.29 0.41016 55.804 55.531 55.941 -0.48554 60 20 4 0 0 0 0.28079 2 30490 30490;30601 57.471 11.45 1 40785000 + 32501 17002 21582 21993 38300;38301 38300 0.10158637202573573 LIDQIPLR 8 Unmodified _LIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.3002624511719 2 484.300384 966.586216 -0.27672 -0.00013401 -0.33084 -0.00016023 -0.60756 -0.00029424 484.30007538313373 55.927 0.36982 55.858 55.685 56.055 -0.068741 48 19 3 0 0 0 0.28079 1 30404 30404 57.471 11.45 1 29598000 + 32502 17002 21582 21993 38302 38302 0.10158637202573573 LIDQIPLR 8 Unmodified _LIDQIPLR_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.300384 966.586216 -0.77273 -0.00037423 0.20495 9.9258E-05 -0.56778 -0.00027498 484.3004660505444 56.29 0.41016 55.804 55.531 55.941 -0.48554 -0.026803 0.00014811 NaN 57.471 60 20 4 NaN NaN NaN NaN 0 NaN NaN 0 40785000 + 32503 17002 21582 21993 0.10158637202573573 LIDSQIELVI 10 Unmodified _LIDSQIELVI_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.8365478515625 2 571.836997 1141.65944 0.63487 0.00036304 -0.47794 -0.00027331 0.15693 8.9738E-05 571.8366878671474 53.462 0.27859 53.462 53.327 53.606 0 31 12 3 0 0 0 0.077785 1 29610 29610 51.63 3.8811 1 8543400 + 32504 18458 21583 21994 38303 38303 0.09427721134511557 LIDSQIELVI 10 Unmodified _LIDSQIELVI_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.836997 1141.65944 0.63487 0.00036304 -0.47794 -0.00027331 0.15693 8.9738E-05 571.8366878671474 53.462 0.27859 53.462 53.327 53.606 0 0.029862 -7.4587E-05 NaN 51.63 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 8543400 + 32505 18458 21583 21994 0.09427721134511557 LIDSQIELVI 10 Unmodified _LIDSQIELVI_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.836997 1141.65944 0.54825 0.00031351 -0.17461 -9.9851E-05 0.37364 0.00021366 571.8372646664362 53.869 0.13877 53.402 53.368 53.507 -0.46664 -0.029862 0.00027232 NaN 51.63 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1209900 + 32506 18458 21583 21994 0.09427721134511557 LIDTHLPF 8 Unmodified _LIDTHLPF_ 0 0 0 REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.2647705078125 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 96.469 1 90.293 89.793 90.793 -6.1757 0 0 0 0.44807 1 63929 63929 46.921 0 1 + 32507 17047 21584 21995 38304 38304 0.03838972902849491 LIDYLLQF 8 Unmodified _LIDYLLQF_ 0 0 0 ENST00000345990.8_2_5:122881200-122881245:+|nuORF ENST00000345990.8_2_5:122881200-122881245:+|nuORF ENST00000345990.8_2_5:122881200-122881245:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.8117065429688 2 512.789318 1023.56408 0.72841 0.00037352 -1.9527 -0.0010013 -1.2242 -0.00062778 512.7880372470698 59.493 0.21006 53.378 53.286 53.496 -6.1147 14 10 2 0 0 0 8.7369 1 38265 38265 14.582 1.0738 1 6885700 32508 12028 21585 21996 38305 38305 0.05324412734159978 LIEDEFIIDE 10 Unmodified _LIEDEFIIDE_ 0 0 0 nc|ENSG00000145241|Q03188-2|CENPC;ENST00000510189.5_1_4:68359569-68411187:-|nuORF;ENSG00000145241|ENST00000273853|CENPC nc|ENSG00000145241|Q03188-2|CENPC nc|ENSG00000145241|Q03188-2|CENPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.3052978515625 2 618.305726 1234.5969 0.35904 0.000222 -1.972 -0.0012193 -1.6129 -0.0009973 618.3052133862361 79.294 0.29725 79.294 79.121 79.418 0 30 12 4 0 0 0 0.69064 1 44028 44028 3.9444 0.068064 1 1430700 32509 5678 21586 21997 38306 38306 -0.011014697243354021 LIEELFGMI 9 Unmodified _LIEELFGMI_ 0 0 0 REV__ENSG00000068097|ENST00000184956|HEATR6 REV__ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7896728515625 2 532.788461 1063.56237 0.50478 0.00026894 0.91264 0.00048624 1.4174 0.00075518 532.7892012136706 66.495 0.47176 60.319 60.156 60.628 -6.1757 55 26 3 0 0 0 0.12841 1 43331 43331 30.225 0 1 99829000 + 32510 17431 21587 21998 38307 38307 0.03313035653877705 LIELSSIYK 9 Unmodified _LIELSSIYK_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.3137817382812 2 533.313158 1064.61176 0.52299 0.00027892 -0.066331 -3.5375E-05 0.45666 0.00024354 533.3127805912368 65.206 0.44305 59.03 58.823 59.266 -6.1757 40 24 2 0 0 0 0.18882 1 42432 42432 10.824 7.2274 1 38278000 + 32511 21279 21588 21999 38308 38308 0.08204066934331422 LIESEAPP 8 Unmodified _LIESEAPP_ 0 0 0 nc|ENSG00000152242|Q96B23-2|ARK2N;ENSG00000152242|ENST00000615052|C18orf25 nc|ENSG00000152242|Q96B23-2|ARK2N nc|ENSG00000152242|Q96B23-2|ARK2N MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.444580078125 1 855.445825 854.438549 0.026916 2.3025E-05 1.6235 0.0013888 1.6505 0.0014119 855.4469682240291 62.74 0.28164 62.74 62.589 62.87 0 25 11 3 0 0 0 0.44122 2 34958 34958;35064 40.449 6.2612 1 1917500 32512 6173 21589 22000 38309;38310 38309 0.0055070087789772515 LIFAPILL 8 Unmodified _LIFAPILL_ 0 0 0 ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENST00000496432.6_1_1:10713095-10754402:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 899.5978393554688 1 899.596453 898.589176 0.83063 0.00074723 1.0665 0.00095943 1.8971 0.0017067 899.5975103717975 102.39 0.058495 96.215 96.181 96.239 -6.1757 8 4 2 0 0 0 0.32738 1 68722 68722 52.334 0 1 1689700 32513 14369 21590 22001 38311 38311 0.13582512327377572 LIFFVNKLPE 10 Unmodified _LIFFVNKLPE_ 0 0 0 REV__nc|ENSG00000134042|Q9BYG7-6|MRO REV__nc|ENSG00000134042|Q9BYG7-6|MRO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2359008789062 3 407.241025 1218.70125 NaN NaN NaN NaN NaN NaN NaN 103.67 1 103.62 103.12 104.12 -0.047928 0 0 0 0.98857 1 57571 57571 1.9064 0.45126 1 + 32514 29637 21591 22002 38312 38312 0.10064321613708671 LIFKSYYPL 9 Unmodified _LIFKSYYPL_ 0 0 0 REV__ENSG00000164815|ENST00000297431|ORC5 REV__ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2218933105469 3 381.886471 1142.63758 0.21473 8.2002E-05 2.2353 0.00085361 2.45 0.00093562 381.8873802576085 26.975 0.088245 27.004 26.935 27.023 0.028664 5 3 2 0 0 0 0.52759 1 14011 14011 5.7834 3.1522 1 4495500 + 32515 21953 21592 22003 38313 38313 0.0719696117660078 LIFNDPKID 9 Unmodified _LIFNDPKID_ 0 0 0 REV__ENSG00000169679|ENST00000302759|BUB1 REV__ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7958374023438 2 537.795132 1073.57571 0.58164 0.0003128 -0.87715 -0.00047173 -0.29551 -0.00015892 537.7949248483294 43.299 0.34515 38.534 38.318 38.663 -4.7648 39 24 2 0 0 0 0.14 1 26210 26210 29.082 0 1 32484000 + 32516 22414 21593 22004 38314 38314 0.04186609757448423 LIFRRRCI 8 Unmodified _LIFRRRCI_ 0 0 0 ENST00000450295.5_3_9:91992941-91993109:-|nuORF ENST00000450295.5_3_9:91992941-91993109:-|nuORF ENST00000450295.5_3_9:91992941-91993109:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7691650390625 2 538.829121 1075.64369 1.1105 0.00059836 0.96474 0.00051983 2.0752 0.0011182 538.8296615617081 100.03 0.10868 93.851 93.804 93.912 -6.1757 10 6 2 0 0 0 8.7369 1 66805 66805 11.114 0.93107 1 22534000 32517 13509 21594 22005 38315 38315 0.10889200927135789 LIFSFGQL 8 Unmodified _LIFSFGQL_ 0 0 0 nc|ENSG00000167780|O75908-3|SOAT2;nc|ENSG00000167780|O75908-2|SOAT2;ENSG00000167780|ENST00000301466|SOAT2;nc|ENSG00000167780|O75908-4|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 MSMS AL20221201_MKP_PDAC_01 4 462.7632446289062 2 462.763104 923.511654 NaN NaN NaN NaN NaN NaN NaN 39.116 1 34.665 34.165 35.165 -4.4509 0 0 0 0.9192 1 23172 23172 16.942 0 1 32518 7670 21595 22006 38316 38316 0.046838743911848724 LIFSVPIVY 9 Unmodified _LIFSVPIVY_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.814453125 2 525.815336 1049.61612 1.4888 0.00078284 -2.6165 -0.0013758 -1.1277 -0.00059296 525.8139594328322 100.34 0.10958 100.31 100.27 100.38 -0.036301 7 3 3 0 0 0 0.016494 1 55761 55761 67.035 36.811 1 9657700 32519 4508 21596 22007 38317 38317 0.09329576147911212 LIFSVPIVY 9 Unmodified _LIFSVPIVY_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8156127929688 2 525.815336 1049.61612 1.0813 0.00056855 -0.25671 -0.00013498 0.82456 0.00043356 525.8151553922968 101.27 0.11234 95.097 95.032 95.144 -6.1757 17 6 4 0 0 0 0.016494 1 67919 67919 67.035 43.887 1 144250000 32520 4508 21596 22007 38318 38318 0.09329576147911212 LIGCAMNFTTL 11 Unmodified _LIGCAMNFTTL_ 0 0 0 ENSG00000182747|ENST00000331858|SLC35D3 ENSG00000182747|ENST00000331858|SLC35D3 ENSG00000182747|ENST00000331858|SLC35D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2948608398438 2 592.296127 1182.5777 -0.48417 -0.00028677 -0.96458 -0.00057132 -1.4488 -0.00085809 592.2954269342108 56.082 0.20015 55.597 55.471 55.672 -0.48554 14 9 2 0 0 0 0.5229 1 30452 30452 15.248 1.3424 1 2428200 32521 9081 21597 22008 38319 38319 -0.006284208205897812 LIGGNQGG 8 Unmodified _LIGGNQGG_ 0 0 0 REV__nc|ENSG00000138081|Q86XK2-2|FBXO11 REV__nc|ENSG00000138081|Q86XK2-2|FBXO11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.189453125 2 358.190303 714.366053 0.29564 0.0001059 -3.7289 -0.0013357 -3.4333 -0.0012298 358.1886983607882 66.723 0.30551 66.723 66.533 66.839 0 18 13 2 0 0 0 0.80624 1 37199 37199 2.8892 0.31174 1 1128800 + 32522 20301 21598 22009 38320 38320 -0.002555884049911583 LIGKVYTA 8 Unmodified _LIGKVYTA_ 0 0 0 ENST00000524261.1_1_8:42040235-42040316:-|nuORF;nc|ENSG00000104368|P00750-2|PLAT;nc|ENSG00000104368|P00750-4|PLAT;nc|ENSG00000104368|P00750-3|PLAT;ENSG00000104368|ENST00000220809|PLAT ENST00000524261.1_1_8:42040235-42040316:-|nuORF ENST00000524261.1_1_8:42040235-42040316:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.5195922851562 1 864.518931 863.511654 0.12332 0.00010661 -0.16339 -0.00014126 -0.040074 -3.4645E-05 864.5187789253664 92.369 0.42201 92.369 92.147 92.569 0 81 31 3 0 0 0 0.63229 1 50995 50995 23.148 0 1 4767700 32523 2200 21599 22010 38321 38321 0.07443874391174177 LIGLSIKV 8 Unmodified _LIGLSIKV_ 0 0 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.7890625 2 421.789121 841.56369 0.52021 0.00021942 0.35409 0.00014935 0.87431 0.00036877 421.7893035929995 67.101 0.33578 67.119 66.961 67.297 0.018036 37 16 3 0 0 0 0.44122 1 36810 36810 40.449 0 1 7647900 32524 7513 21600 22011 38322 38322 0.1365703780494414 LIGMTALLTV 10 Oxidation (M) _LIGM(Oxidation (M))TALLTV_ LIGM(1)TALLTV LIGM(59)TALLTV 0 0 1 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3128051757812 2 524.309561 1046.60457 0.6614 0.00034678 2.8322 0.001485 3.4936 0.0018317 524.3106118246789 93.708 1.1078 87.532 86.754 87.862 -6.1757 159 72 4 0 0 0 0.04925 2 61991 61991;62124 58.679 6.4105 1 76203000 32525 10139 21601 22012 38323;38324 38323 1651 0.08313011062227815 LIGQLEPTL 9 Unmodified _LIGQLEPTL_ 0 0 0 REV__ENST00000485800.6_1_10:102248942-102249915:-|nuORF REV__ENST00000485800.6_1_10:102248942-102249915:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2929992675781 2 492.292225 982.569897 1.2779 0.00062909 0.53237 0.00026208 1.8103 0.00089117 492.2929096320703 95.893 0.17328 89.718 89.644 89.817 -6.1757 13 9 2 0 0 0 0.1773 1 63518 63518 25.399 0.72543 1 5081200 + 32526 17577 21602 22013 38325 38325 0.07791511245807214 LIGQRILPL 9 Unmodified _LIGQRILPL_ 0 0 0 ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF ENST00000492632.5_1_20:9288449-9449247:+|nuORF ENST00000492632.5_1_20:9288449-9449247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8399658203125 2 511.839677 1021.6648 1.4298 0.00073182 -0.31649 -0.00016199 1.1133 0.00056983 511.83977065064397 82.54 0.46762 82.602 82.347 82.815 0.062004 44 17 4 0 0 0 0.087258 1 45660 45660 36.044 0 1 6612500 32527 1946 21603 22014 38326 38326 0.1548348950767604 LIGQYSALLL 10 Unmodified _LIGQYSALLL_ 0 0 0 REV__ENSG00000119714|ENST00000650645|GPR68 REV__ENSG00000119714|ENST00000650645|GPR68 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.8307495117188 2 545.828975 1089.6434 NaN NaN NaN NaN NaN NaN NaN 49.36 1 48.974 48.474 49.474 -0.38583 0 0 0 0.51756 1 26530 26530 25.399 0 1 + 32528 19206 21604 22015 38327 38327 0.10216059688286805 LIGRKELF 8 Unmodified _LIGRKELF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.3031616210938 2 488.302927 974.591301 0.80304 0.00039213 -0.38194 -0.0001865 0.4211 0.00020563 488.3029935564701 47.609 0.22578 47.571 47.435 47.661 -0.038643 21 10 3 0 0 0 0.17811 1 25652 25652 78.728 6.8058 1 4527700 32529 1381 21605 22016 38328 38328 0.10298941065195777 LIGWASRSL 9 Unmodified _LIGWASRSL_ 0 0 0 ENSG00000174109|ENST00000442039|UQCC4;ENST00000563974.1_2_16:1470249-1470717:-|nuORF ENSG00000174109|ENST00000442039|UQCC4 ENSG00000174109|ENST00000442039|UQCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7881164550781 2 501.790184 1001.56581 -0.40703 -0.00020424 -4.0078 -0.0020111 -4.4149 -0.0022153 501.788398176975 22.693 0.17055 22.716 22.623 22.794 0.022896 9 6 2 0 0 0 0.5029 1 11564 11564 7.2892 2.0586 1 1126700 32530 8390 21606 22017 38329 38329 0.06509466542752307 LIHFWERL 8 Unmodified _LIHFWERL_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8782348632812 3 371.87831 1112.6131 0.15357 5.7108E-05 0.17491 6.5043E-05 0.32847 0.00012215 371.87814855307784 24.374 0.19581 24.395 24.241 24.437 0.021185 18 7 3 0 0 0 0.6895 1 12557 12557 19.257 1.8143 1 4949700 32531 10177 21607 22018 38330 38330 0.061297458137460126 LIHGVLCVLL 10 Carbamidomethyl (C) _LIHGVLC(Carbamidomethyl (C))VLL_ LIHGVLC(1)VLL LIHGVLC(50)VLL 0 1 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|2|1|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|2|1|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.84619140625 2 568.846645 1135.67874 1.4123 0.0008034 -0.34645 -0.00019708 1.0659 0.00060632 568.8464672144496 95.491 0.48718 89.315 89.021 89.508 -6.1757 46 28 2 0 0 0 0.086532 1 63366 63366 49.669 13.542 1 11610000 + 32532 29366 21608 22019 38331 38331 1064 0.11632398944425404 LIHHQWVL 8 Unmodified _LIHHQWVL_ 0 0 0 nc|ENSG00000293416|E5RG02|PRSS46P nc|ENSG00000293416|E5RG02|PRSS46P nc|ENSG00000293416|E5RG02|PRSS46P MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.7748413085938 2 523.300719 1044.58688 1.1264 0.00058947 3.4771 0.0018195 4.6035 0.002409 523.3038787720398 88.871 0.17852 82.695 82.636 82.815 -6.1757 12 9 2 0 0 0 8.7369 1 58705 58705 0.79363 0 1 6808800 32533 16654 21609 22020 38332 38332 0.06637476642254114 LIHQQIELL 9 Unmodified _LIHQQIELL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.83203125 2 553.832049 1105.64954 0.47244 0.00026165 -0.067938 -3.7627E-05 0.4045 0.00022403 553.8319675089822 58.157 0.34812 57.667 57.492 57.84 -0.48974 53 16 4 0 0 0 0.047196 1 31677 31677 46.021 3.9264 1 29228000 32534 9647 21610 22021 38333 38333 0.10094577919812764 LIHQQIELL 9 Unmodified _LIHQQIELL_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENST00000493432.5_1_3:146234949-146251295:-|nuORF;ENST00000490745.5_1_3:146243371-146251295:-|nuORF;ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENSG00000163746|ENST00000696113|PLSCR2;nc|ENSG00000163746|Q9NRY7-3|PLSCR2;nc|ENSG00000163746|Q9NRY7|PLSCR2 ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8329467773438 2 553.832049 1105.64954 0.75934 0.00042055 0.96923 0.00053679 1.7286 0.00095734 553.8326988513691 66.158 0.78033 59.982 59.723 60.503 -6.1757 65 44 2 0 0 0 0.024882 2 42898 42898;43051 58.679 14.821 1 17845000 32535 9647 21610 22021 38334;38335 38334 0.10094577919812764 LIHVLDEYL 9 Unmodified _LIHVLDEYL_ 0 0 0 REV__ENSG00000161682|ENST00000293443|FAM171A2 REV__ENSG00000161682|ENST00000293443|FAM171A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.83740234375 2 557.810782 1113.60701 1.4923 0.00083242 -3.7309 -0.0020811 -2.2386 -0.0012487 558.3107393108847 101.06 0.14357 94.888 94.78 94.923 -6.1757 13 7 2 0 0 0 0.18941 1 67689 67689 9.3474 0 1 37051000 + 32536 21606 21611 22022 38336 38336 0.05475182791565203 LIIAPDSLLFL 11 Unmodified _LIIAPDSLLFL_ 0 0 0 ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF ENST00000254942.7_1_16:69390540-69390804:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.5854797363281 3 405.58468 1213.73221 NaN NaN NaN NaN NaN NaN NaN 80.625 1 74.449 73.949 74.949 -6.1757 0 0 0 0.84805 1 52902 52902 9.7643 1.3199 1 32537 11170 21612 22023 38337 38337 0.13389474927930678 LIIELRRGF 9 Unmodified _LIIELRRGF_ 0 0 0 REV__ENST00000545363.6_1_12:9808558-9809281:+|nuORF REV__ENST00000545363.6_1_12:9808558-9809281:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.221923828125 3 372.901114 1115.68151 1.6997 0.00063383 2.428 0.00090542 4.1278 0.0015393 373.2358439942867 20.447 0.23578 17.754 17.666 17.901 -2.693 17 11 2 0 0 0 0.21144 1 10918 10918 7.1017 0.90987 1 847390 + 32538 28648 21613 22024 38338 38338 0.1282999039360675 LIIENNSK 8 Unmodified _LIIENNSK_ 0 0 0 REV__ENSG00000123352|ENST00000552918|SPATS2 REV__ENSG00000123352|ENST00000552918|SPATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7668151855469 2 465.766374 929.518196 0.1321 6.1528E-05 0.62957 0.00029323 0.76167 0.00035476 465.7666358929634 23.699 0.58989 23.699 23.529 24.119 0 62 29 3 0 0 0 0.54555 1 12138 12138 30.637 0 1 3119000 + 32539 19382 21614 22025 38339 38339 0.05061767551910634 LIIENNSK 8 Unmodified _LIIENNSK_ 0 0 0 REV__ENSG00000123352|ENST00000552918|SPATS2 REV__ENSG00000123352|ENST00000552918|SPATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7660217285156 2 465.766374 929.518196 -0.049003 -2.2824E-05 -0.063238 -2.9454E-05 -0.11224 -5.2278E-05 465.7663830611222 23.786 0.16768 23.798 23.714 23.881 0.012396 12 7 2 0 0 0 0.52622 1 12128 12128 32.305 0 1 2901400 + 32540 19382 21614 22025 38340 38340 0.05061767551910634 LIIENNSK 8 Unmodified _LIIENNSK_ 0 0 0 REV__ENSG00000123352|ENST00000552918|SPATS2 REV__ENSG00000123352|ENST00000552918|SPATS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 465.766374 929.518196 -0.049003 -2.2824E-05 -0.063238 -2.9454E-05 -0.11224 -5.2278E-05 465.7663830611222 23.786 0.16768 23.798 23.714 23.881 0.012396 0.049681 -0.0004091 NaN 32.305 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2901400 + 32541 19382 21614 22025 0.05061767551910634 LIIHGFRVL 9 Unmodified _LIIHGFRVL_ 0 0 0 nc|ENSG00000144837|Q53H76-2|PLA1A;nc|ENSG00000144837|Q53H76-3|PLA1A;ENSG00000144837|ENST00000273371|PLA1A nc|ENSG00000144837|Q53H76-2|PLA1A nc|ENSG00000144837|Q53H76-2|PLA1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3382568359375 2 534.339844 1066.66514 NaN NaN NaN NaN NaN NaN NaN 37.118 1 37.14 36.64 37.64 0.021545 0 0 0 0.82283 1 19691 19691 4.3292 1.0479 1 32542 5650 21615 22026 38341 38341 0.1344690922751397 LIIKKIHLL 9 Unmodified _LIIKKIHLL_ 0 0 0 REV__ENST00000594012.1_19:21992006-21992165:-|nuORF REV__ENST00000594012.1_19:21992006-21992165:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.890869140625 2 545.88917 1089.76379 NaN NaN NaN NaN NaN NaN NaN 16.346 1 16.351 15.851 16.851 0.0050564 0 0 0 0.8622 1 8193 8193 0 0 1 + 32543 29198 21616 22027 38342 38342 0.22249512472581046 LIILLLLGPQ 10 Unmodified _LIILLLLGPQ_ 0 0 0 REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1092.906616210938 1 1092.73909 1091.73182 0.799 0.0008731 -1.1239 -0.0012281 -0.32485 -0.00035497 1092.7370427081182 52.645 0.18614 46.91 46.856 47.042 -5.7345 13 10 2 0 0 0 0.23325 1 33235 33235 6.2058 0 1 20218000 + 32544 23138 21617 22028 38343 38343 0.18962099998748272 LIILRGKIK 9 Unmodified _LIILRGKIK_ 0 0 0 ENST00000438666.6_1_13:36878560-36878611:-|nuORF ENST00000438666.6_1_13:36878560-36878611:-|nuORF ENST00000438666.6_1_13:36878560-36878611:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.3807983398438 2 527.378969 1052.74339 NaN NaN NaN NaN NaN NaN NaN 86.977 1 86.977 86.477 87.477 0 0 0 0 0.85737 1 48169 48169 0.6015 0 1 32545 13366 21618 22029 38344 38344 0.2191234181273103 LIINIMSAEDF 11 Unmodified _LIINIMSAEDF_ 0 0 0 ENSG00000127990|ENST00000648936|SGCE;nc|ENSG00000127990|O43556-3|SGCE;nc|ENSG00000127990|O43556-4|SGCE ENSG00000127990|ENST00000648936|SGCE ENSG00000127990|ENST00000648936|SGCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8882751464844 3 422.553051 1264.63732 0.14691 6.2078E-05 -0.4645 -0.00019628 -0.31759 -0.0001342 422.55281399994243 28.361 0.30745 28.39 28.262 28.569 0.029564 44 12 5 0 0 0 0.74203 1 14854 14854 0.08335 0.08335 1 79375000 32546 4040 21619 22030 38345 38345 0.015591733944347652 LIIPPADC 8 Unmodified _LIIPPADC_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.2286071777344 2 421.228039 840.441526 0.39804 0.00016767 0.81115 0.00034168 1.2092 0.00050935 421.228569024118 93.957 0.1994 93.537 93.348 93.548 -0.42044 10 8 2 0 0 0 0.80311 1 51323 51323 4.756 2.4533 1 260190 + 32547 19029 21620 22031 38346 38346 0.014922527310545775 LIIPPADC 8 Unmodified _LIIPPADC_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2292785644531 2 421.228039 840.441526 1.4936 0.00062916 -0.55438 -0.00023352 0.93925 0.00039564 421.22766786970544 100.28 0.17914 94.107 93.978 94.157 -6.1757 15 10 2 0 0 0 0.74163 1 67007 67007 13.508 4.1604 1 18280000 + 32548 19029 21620 22031 38347 38347 0.014922527310545775 LIIPPADC 8 Unmodified _LIIPPADC_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 421.228039 840.441526 0.39804 0.00016767 0.81115 0.00034168 1.2092 0.00050935 421.228569024118 93.957 0.1994 93.537 93.348 93.548 -0.42044 0 0 NaN 4.756 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 260190 + 32549 19029 21620 22031 0.014922527310545775 LIIQKCVGQI 10 Unmodified _LIIQKCVGQI_ 0 0 0 nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2260437011719 3 372.22661 1113.658 0.93085 0.00034649 0.42084 0.00015665 1.3517 0.00050314 372.2268174464579 17.248 0.28711 14.661 14.506 14.793 -2.5866 141 46 4 0 0 0 0.52888 1 8956 8956 8.9762 0 1 25600000 32550 2280 21621 22032 38348 38348 0.10571808564782259 LIIVLIKLLWL 11 Unmodified _LIIVLIKLLWL_ 0 0 0 REV__ENSG00000167080|ENST00000393354|B4GALNT2 REV__ENSG00000167080|ENST00000393354|B4GALNT2 MSMS AL20221201_MKP_PDAC_01 4 446.7428588867188 3 446.315865 1335.92577 NaN NaN NaN NaN NaN NaN NaN 47.951 1 42.717 42.217 43.217 -5.2339 0 0 0 0.9428 1 29818 29818 0.50596 0 1 + 32551 22178 21622 22033 38349 38349 0.271240564348318 LIKKRHAY 8 Unmodified _LIKKRHAY_ 0 0 0 REV__ENST00000521663.1_1_8:58193267-58194656:+|nuORF REV__ENST00000521663.1_1_8:58193267-58194656:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2543334960938 2 514.821818 1027.62908 0.12043 6.2002E-05 0.12706 6.5411E-05 0.24749 0.00012741 514.8219946697105 66.518 0.20548 66.035 65.925 66.13 -0.48323 16 9 2 0 0 0 8.7369 1 36274 36274 2.8892 0 1 1037800 + 32552 28291 21623 22034 38350 38350 0.11637452050649699 LIKLLALGD 9 Unmodified _LIKLLALGD_ 0 0 0 ENSG00000041353|ENST00000262094|RAB27B;ENST00000586594.1_1_18:52544816-52555250:+|nuORF ENSG00000041353|ENST00000262094|RAB27B ENSG00000041353|ENST00000262094|RAB27B MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3136596679688 2 478.312961 954.611368 1.6367 0.00078285 -0.10449 -4.9977E-05 1.5322 0.00073288 478.3129516945937 105.4 0.20367 99.227 99.171 99.375 -6.1757 86 44 2 0 0 0 0.61381 1 70646 70646 0.52476 0 1 58624000 32553 653 21624 22035 38351 38351 0.13224692005121597 LIKRRQHI 8 Unmodified _LIKRRQHI_ 0 0 0 REV__ENSG00000206527|ENST00000383657|HACD2 REV__ENSG00000206527|ENST00000383657|HACD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.0697631835938 3 355.233087 1062.67743 0.34302 0.00012185 2.1973 0.00078056 2.5403 0.00090241 355.23365043719775 48.578 0.29341 48.206 47.965 48.258 -0.37172 25 14 3 0 0 0 8.7369 1 26090 26090 4.3292 1.334 1 6430500 + 32554 24255 21625 22036 38352 38352 0.14859945690545828 LIKRVLQKIF 10 Unmodified _LIKRVLQKIF_ 0 0 0 REV__ENSG00000069020|ENST00000403625|MAST4 REV__ENSG00000069020|ENST00000403625|MAST4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.4231567382812 2 629.423908 1256.83326 NaN NaN NaN NaN NaN NaN NaN 85.03 1 84.528 84.028 85.028 -0.5015 0 0 0 0.98914 1 46526 46526 1.8442 1.2427 1 + 32555 17446 21626 22037 38353 38353 0.2151197142129604 LIKVILLLY 9 Unmodified _LIKVILLLY_ 0 0 0 REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF REV__ENST00000426918.2_1_9:125719318-125748500:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2532958984375 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 45.257 1 45.229 44.729 45.729 -0.028011 0 0 0 0.83812 1 24304 24304 2.9952 1.8019 1 + 32556 26155 21627 22038 38354 38354 0.20175288004156755 LIKWAYERL 9 Unmodified _LIKWAYERL_ 0 0 0 REV__ENST00000572607.1_1_17:454958-465900:-|nuORF REV__ENST00000572607.1_1_17:454958-465900:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.9027099609375 3 397.901003 1190.68118 NaN NaN NaN NaN NaN NaN NaN 42.457 1 42.15 41.65 42.65 -0.30682 0 0 0 0.49196 1 22553 22553 16.149 1.7437 1 + 32557 20523 21628 22039 38355 38355 0.09346570673733368 LILARLLLIFD 11 Unmodified _LILARLLLIFD_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.4210205078125 2 650.423574 1298.83259 NaN NaN NaN NaN NaN NaN NaN 104.28 1 104.23 103.73 104.73 -0.048737 0 0 0 0.94307 1 57898 57898 0.30703 0.30703 1 32558 4011 21629 22040 38356 38356 0.19513131981602783 LILEELQSI 9 Unmodified _LILEELQSI_ 0 0 0 REV__ENSG00000110756|ENST00000349215|HPS5 REV__ENSG00000110756|ENST00000349215|HPS5 MSMS AL20221201_MKP_PDAC_01 4 529.3102416992188 2 529.310615 1056.60668 NaN NaN NaN NaN NaN NaN NaN 56.956 1 50.979 50.479 51.479 -5.9769 0 0 0 0.13831 1 36390 36390 38.176 0.20157 1 + 32559 18720 21630 22041 38357 38357 0.08063763071731955 LILFFEWWGL 10 Unmodified _LILFFEWWGL_ 0 0 0 REV__ENST00000407008.7_1_17:26369336-26369447:+|nuORF REV__ENST00000407008.7_1_17:26369336-26369447:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7624816894531 3 441.909387 1322.70633 0.46312 0.00020466 -0.25586 -0.00011307 0.20725 9.1587E-05 441.9093570316237 30.628 0.27608 30.526 30.365 30.641 -0.10269 32 10 4 0 0 0 0.23922 1 15833 15833 3.8763 0 1 4340200 + 32560 26663 21631 22042 38358 38358 0.05788625476316156 LILIRNNLTVI 11 Unmodified _LILIRNNLTVI_ 0 0 0 nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-2|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L nc|ENSG00000121210|A2VDJ0-3|TMEM131L MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.4174194335938 2 641.41628 1280.81801 1.386 0.00088899 -0.37156 -0.00023832 1.0144 0.00065067 641.4158302716154 106.62 0.055649 100.45 100.42 100.47 -6.1757 14 9 2 0 0 0 0.7326 1 71344 71344 1.1933 0 1 1378500 32561 3571 21632 22043 38359 38359 0.18883059833456173 LILKFIILIL 10 Unmodified _LILKFIILIL_ 0 0 0 ENST00000220531.7_1_15:45898790-45898961:+|nuORF ENST00000220531.7_1_15:45898790-45898961:+|nuORF ENST00000220531.7_1_15:45898790-45898961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.134765625 2 599.930503 1197.84645 NaN NaN NaN NaN NaN NaN NaN 56.531 1 56.462 55.962 56.962 -0.068737 0 0 0 1.0061 1 30753 30753 0 0 1 32562 11026 21633 22044 38360 38360 0.25544409480721697 LILKKHKDF 9 Unmodified _LILKKHKDF_ 0 0 0 ENST00000280557.10_1_12:123252139-123253391:+|nuORF ENST00000280557.10_1_12:123252139-123253391:+|nuORF ENST00000280557.10_1_12:123252139-123253391:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7225341796875 2 571.358234 1140.70191 NaN NaN NaN NaN NaN NaN NaN 89.811 1 89.309 88.809 89.809 -0.50171 0 0 0 0.85737 1 49098 49098 0.6015 0 1 32563 11408 21634 22045 38361 38361 0.13719161053427342 LILLLNGYVV 10 Unmodified _LILLLNGYVV_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.90625 3 372.905754 1115.69543 1.6266 0.00060656 0.080429 2.9993E-05 1.707 0.00063656 372.90568682445587 88.64 1.0291 82.464 81.993 83.022 -6.1757 144 57 3 0 0 0 0.56675 1 58198 58198 12.873 0.63195 1 35406000 + 32564 21250 21635 22046 38362 38362 0.14221223102049407 LILLMKLKKM 10 Unmodified _LILLMKLKKM_ 0 0 0 ENST00000431693.1_1_3:10070396-10074599:+|nuORF ENST00000431693.1_1_3:10070396-10074599:+|nuORF ENST00000431693.1_1_3:10070396-10074599:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.7899169921875 3 410.939524 1229.79674 NaN NaN NaN NaN NaN NaN NaN 11.384 1 8.9022 8.4022 9.4022 -2.482 0 0 0 1.0061 1 5732 5732 0 0 1 32565 13265 21636 22047 38363 38363 0.19103635208716696 LILLPAFLVT 10 Unmodified _LILLPAFLVT_ 0 0 0 ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF ENST00000266126.9_1_14:75475951-75476050:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.61083984375 2 550.359911 1098.70527 NaN NaN NaN NaN NaN NaN NaN 104.5 1 104.45 103.95 104.95 -0.048737 0 0 0 1.0019 1 58018 58018 0.45834 0 1 32566 11341 21637 22048 38364 38364 0.15986411107428466 LILLYEPLF 9 Unmodified _LILLYEPLF_ 0 0 0 nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000472637.5_1_3:112724385-112732818:-|nuORF nc|ENSG00000163608|Q6NW34-2|NEPRO nc|ENSG00000163608|Q6NW34-2|NEPRO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.42724609375 2 560.836268 1119.65798 1.775 0.00099549 1.002 0.00056194 2.777 0.0015574 560.8365235785294 100.43 0.13828 100.39 100.29 100.43 -0.036301 6 4 2 0 0 0 0.203 1 55785 55785 9.3474 4.1168 1 1144900 32567 7027 21638 22049 38365 38365 0.10294131836417364 LILMKIRQQ 9 Unmodified _LILMKIRQQ_ 0 0 0 REV__nc|ENSG00000112964|P10912-4|GHR REV__nc|ENSG00000112964|P10912-4|GHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.9081420898438 3 381.574121 1141.70053 0.12875 4.9126E-05 0.19591 7.4754E-05 0.32465 0.00012388 381.57421234190105 22.253 0.29577 22.267 22.134 22.429 0.013796 22 12 2 0 0 0 0.61381 1 11506 11506 0.23584 0.23584 1 6522700 + 32568 18844 21639 22050 38366 38366 0.13535203693004405 LILQKRKGF 9 Unmodified _LILQKRKGF_ 0 0 0 ENSG00000204195|ENST00000374521|AWAT1 ENSG00000204195|ENST00000374521|AWAT1 ENSG00000204195|ENST00000374521|AWAT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.9065246582031 3 368.241359 1101.70225 1.2412 0.00045705 -2.1498 -0.00079164 -0.90861 -0.00033459 368.2406046870526 40.536 0.082081 36.006 35.934 36.016 -4.5294 7 4 2 0 0 0 0.21806 1 24196 24196 2.7352 0.45242 1 5480200 32569 10251 21640 22051 38367 38367 0.1554658077327531 LILSGARCYL 10 Unmodified _LILSGARCYL_ 0 0 0 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.2916259765625 2 554.812802 1107.61105 1.5034 0.00083411 2.6805 0.0014872 4.1839 0.0023213 555.3161116264565 64.251 0.34229 58.076 57.899 58.241 -6.1757 39 17 3 0 0 0 0.22667 1 41702 41702 15.847 2.3393 1 9294300 + 32570 19139 21641 22052 38368 38368 0.0615494901362581 LILTALQWQ 9 Unmodified _LILTALQWQ_ 0 0 0 REV__nc|ENSG00000147099|Q9BY41-4|HDAC8 REV__nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.320556640625 2 543.321317 1084.62808 0.51744 0.00028114 0.095496 5.1885E-05 0.61294 0.00033302 543.3211731493174 75.127 0.30487 74.65 74.516 74.821 -0.47714 30 13 3 0 0 0 0.07916 1 41084 41084 37.974 5.1883 1 3128000 + 32571 20864 21642 22053 38369 38369 0.08915192891095103 LILTSDQSDR 10 Unmodified _LILTSDQSDR_ 0 0 0 REV__ENST00000358157.2_1_9:91618107-91618215:+|nuORF REV__ENST00000358157.2_1_9:91618107-91618215:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2025146484375 3 383.203299 1146.58807 NaN NaN NaN NaN NaN NaN NaN 73.542 1 73.542 73.042 74.042 0 0 0 0 0.97302 1 40944 40944 1.7423 0.54893 1 + 32572 25869 21643 22054 38370 38370 0.02063601429836126 LILVIVKKKKK 11 Unmodified _LILVIVKKKKK_ 0 0 0 ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF ENST00000393214.2_1_X:73596212-73596416:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.4847412109375 2 655.486508 1308.95846 NaN NaN NaN NaN NaN NaN NaN 95.897 1 95.529 95.029 96.029 -0.36814 0 0 0 0.9435 1 52377 52377 0 0 1 32573 12698 21644 22055 38371 38371 0.3163426355768024 LILVVLMNGVF 11 Unmodified _LILVVLMNGVF_ 0 0 0 REV__ENSG00000121807|ENST00000445132|CCR2 REV__ENSG00000121807|ENST00000445132|CCR2 MSMS AL20221201_MKP_PDAC_01 4 406.5825500488281 3 406.582394 1216.72535 NaN NaN NaN NaN NaN NaN NaN 23.645 1 20.818 20.318 21.318 -2.8273 0 0 0 0.93954 1 12808 12808 2.8433 0 1 + 32574 19312 21645 22056 38372 38372 0.12565838775731208 LILVYKQDLR 10 Unmodified _LILVYKQDLR_ 0 0 0 REV__nc|ENSG00000152291|O43493-7|TGOLN2 REV__nc|ENSG00000152291|O43493-7|TGOLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.927490234375 3 420.927329 1259.76016 0.69456 0.00029236 -0.15705 -6.6108E-05 0.53751 0.00022625 421.26164644762775 57.18 0.26126 57.114 56.998 57.259 -0.066036 26 12 3 0 0 0 0.65891 1 31122 31122 7.4771 0.85361 1 6661200 + 32575 29709 21646 22057 38373 38373 0.14066797908026274 LILWIIRLLF 10 Unmodified _LILWIIRLLF_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;nc|ENSG00000090054|O15269-2|SPTLC1;ENST00000461132.1_1_9:94871020-94877616:-|nuORF ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.3195190429688 2 650.431202 1298.84785 NaN NaN NaN NaN NaN NaN NaN 82.93 1 82.433 81.933 82.933 -0.49751 0 0 0 1.0019 1 45398 45398 0.45834 0 1 32576 1546 21647 22058 38374 38374 0.21038043569456022 LILYIKWY 8 Unmodified _LILYIKWY_ 0 0 0 REV__ENST00000333319.6_1_7:156431510-156431657:-|nuORF REV__ENST00000333319.6_1_7:156431510-156431657:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.8510131835938 3 371.223194 1110.64775 1.6889 0.00062697 2.2596 0.00083882 3.9485 0.0014658 371.22441861325206 36.064 0.31288 31.871 31.724 32.037 -4.1928 44 18 3 0 0 0 8.7369 1 20933 20933 7.2892 7.2892 1 11068000 + 32577 25621 21648 22059 38375 38375 0.0968556890184118 LILYIKWY 8 Unmodified _LILYIKWY_ 0 0 0 REV__ENST00000333319.6_1_7:156431510-156431657:-|nuORF REV__ENST00000333319.6_1_7:156431510-156431657:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.223194 1110.64775 -0.021694 -8.0533E-06 3.7571 0.0013947 3.7354 0.0013867 371.22458796077274 32.059 0.24635 31.93 31.769 32.015 -0.12915 0.029413 0.00065734 NaN 7.2892 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2325000 + 32578 25621 21648 22059 0.0968556890184118 LILYRKSGL 9 Unmodified _LILYRKSGL_ 0 0 0 ENST00000550434.1_1_12:49934893-49937626:+|nuORF;ENSG00000135519|ENST00000257981|KCNH3 ENST00000550434.1_1_12:49934893-49937626:+|nuORF ENST00000550434.1_1_12:49934893-49937626:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8935546875 3 354.893848 1061.65972 -0.23124 -8.2066E-05 0.78031 0.00027693 0.54907 0.00019486 354.89421744318724 51.524 0.33026 51.47 51.286 51.616 -0.053871 35 16 3 0 0 0 0.49272 1 27897 27897 4.897 0.36815 1 7869600 32579 4714 21649 22060 38376 38376 0.13135185645046477 LILYRKSGL 9 Unmodified _LILYRKSGL_ 0 0 0 ENST00000550434.1_1_12:49934893-49937626:+|nuORF;ENSG00000135519|ENST00000257981|KCNH3 ENST00000550434.1_1_12:49934893-49937626:+|nuORF ENST00000550434.1_1_12:49934893-49937626:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8942565917969 3 354.893848 1061.65972 1.9324 0.00068578 -0.51427 -0.00018251 1.4181 0.00050327 354.89374027428977 88.388 0.74805 82.212 81.693 82.441 -6.1757 70 41 2 0 0 0 0.49272 1 58396 58396 8.1555 0 1 24049000 32580 4714 21649 22060 38377 38377 0.13135185645046477 LIMAANLI 8 Unmodified _LIMAANLI_ 0 0 0 REV__ENSG00000149516|ENST00000278865|MS4A3 REV__ENSG00000149516|ENST00000278865|MS4A3 MSMS AL20221201_MKP_PDAC_01 4 429.7624206542969 2 429.759507 857.50446 NaN NaN NaN NaN NaN NaN NaN 50.987 1 45.338 44.838 45.838 -5.649 0 0 0 0.59893 1 32046 32046 34.187 1.8818 1 + 32581 21003 21650 22061 38378 38378 0.07000818519111363 LIMIPVELLL 10 Unmodified _LIMIPVELLL_ 0 0 0 ENSG00000175336|ENST00000398189|APOF ENSG00000175336|ENST00000398189|APOF ENSG00000175336|ENST00000398189|APOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3677978515625 2 577.366878 1152.7192 0.98029 0.00056599 -0.040066 -2.3133E-05 0.94022 0.00054285 577.3667677363482 100.5 0.2163 94.322 94.201 94.418 -6.1757 37 13 4 0 0 0 0.68719 1 67196 67196 4.3292 0.38484 1 178400000 32582 8511 21651 22062 38379 38379 0.1489532054420124 LIMIRPQPL 9 Unmodified _LIMIRPQPL_ 0 0 0 REV__ENST00000392782.5_3_2:160303483-160304836:-|nuORF REV__ENST00000392782.5_3_2:160303483-160304836:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.8933410644531 3 360.89145 1079.65252 NaN NaN NaN NaN NaN NaN NaN 18.051 1 15.43 14.93 15.93 -2.6215 0 0 0 0.46757 1 9485 9485 11.495 3.8858 1 + 32583 26401 21652 22063 38380 38380 0.11588129772940192 LIMLPEYL 8 Unmodified _LIMLPEYL_ 0 0 0 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 ENSG00000165091|ENST00000297784|TMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.5487060546875 1 991.553267 990.545991 1.4411 0.0014289 2.3084 0.0022889 3.7494 0.0037178 991.5539701894326 100.94 0.18741 94.767 94.701 94.889 -6.1757 14 10 2 0 0 0 0.31612 1 67611 67611 53.576 0.8825 1 28467000 32584 7288 21653 22064 38381 38381 0.050339544877715525 LIMSNIVY 8 Unmodified _LIMSNIVY_ 0 0 0 REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF REV__ENST00000565979.5_1_18:4264838-4293450:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7630004882812 2 476.762246 951.50994 0.83459 0.0003979 0.29837 0.00014225 1.133 0.00054015 476.7624324428058 74.675 0.45748 74.199 73.974 74.432 -0.47588 42 18 3 0 0 0 0.5284 1 40912 40912 32.117 0 1 4741300 + 32585 28917 21654 22065 38382 38382 0.03224497310930019 LIMYDKNEVF 10 Unmodified _LIMYDKNEVF_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MSMS AL20221201_MKP_PDAC_01 4 636.3175048828125 2 636.320657 1270.62676 NaN NaN NaN NaN NaN NaN NaN 78.726 1 72.55 72.05 73.05 -6.1757 0 0 0 0.66657 1 51551 51551 18.146 1.5805 1 + 32586 23742 21655 22066 38383 38383 0.0022719073997450323 LINFLEFIS 9 Unmodified _LINFLEFIS_ 0 0 0 ENST00000295640.8_1_1:201974922-201975033:+|nuORF ENST00000295640.8_1_1:201974922-201975033:+|nuORF ENST00000295640.8_1_1:201974922-201975033:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8747863769531 3 365.874342 1094.6012 1.3847 0.00050664 0.34066 0.00012464 1.7254 0.00063128 365.87436696687735 18.521 0.11551 15.9 15.864 15.98 -2.6215 20 14 2 0 0 0 0.34999 1 9785 9785 10.151 0 1 1501300 32587 11493 21656 22067 38384 38384 0.05768084279907271 LINIRRGNNI 10 Unmodified _LINIRRGNNI_ 0 0 0 ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R ENSG00000140443|ENST00000650285|IGF1R MSMS AL20221201_MKP_PDAC_01 4 591.8558959960938 2 591.856921 1181.69929 NaN NaN NaN NaN NaN NaN NaN 15.975 1 13.418 12.918 13.918 -2.557 0 0 0 0.94014 1 8243 8243 6.2058 0.9089 1 32588 5233 21657 22068 38385 38385 0.11570705648477997 LINKNVRTF 9 Unmodified _LINKNVRTF_ 0 0 0 ENST00000238618.7_1_14:75519930-75519999:-|nuORF ENST00000238618.7_1_14:75519930-75519999:-|nuORF ENST00000238618.7_1_14:75519930-75519999:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2897338867188 2 552.82984 1103.64513 0.5551 0.00030687 -0.38445 -0.00021254 0.17064 9.4337E-05 552.8294326547008 49.076 0.24318 48.704 48.597 48.84 -0.37172 17 11 2 0 0 0 0.20528 1 26312 26312 8.5933 3.3626 1 5686600 32589 11098 21658 22069 38386 38386 0.09745113496887825 LINNINRRL 9 Unmodified _LINNINRRL_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9006958007812 3 375.899885 1124.67783 0.92417 0.0003474 -0.29007 -0.00010904 0.6341 0.00023836 375.89976201635716 17.377 0.25841 14.791 14.637 14.895 -2.5866 93 42 3 0 0 0 0.4887 1 9017 9017 8.1555 8.1555 1 15819000 32590 4549 21659 22070 38387 38387 0.12047320619740276 LINWISSLY 9 Unmodified _LINWISSLY_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8056640625 2 554.8055 1107.59645 -0.42729 -0.00023706 0.29039 0.00016111 -0.1369 -7.5955E-05 554.8056562455945 77.482 0.36288 76.999 76.827 77.189 -0.4826 39 17 3 0 0 0 0.39863 1 42393 42393 12.532 0.89125 1 4407100 + 32591 18566 21660 22071 38388 38388 0.046952001371664664 LINYLSLQGAG 11 Unmodified _LINYLSLQGAG_ 0 0 0 REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8204956054688 2 574.819138 1147.62372 0.29441 0.00016923 0.6928 0.00039823 0.98721 0.00056747 574.819575233758 75.714 0.40878 75.762 75.537 75.946 0.047943 32 18 2 0 0 0 0.37147 1 41713 41713 34.932 34.932 1 38384000 + 32592 17389 21661 22072 38389 38389 0.055816836775193224 LINYNHKKL 9 Unmodified _LINYNHKKL_ 0 0 0 REV__ENSG00000188554|ENST00000590996|NBR1 REV__ENSG00000188554|ENST00000590996|NBR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8965454101562 3 381.560869 1141.66078 1.2895 0.00049204 2.1123 0.00080597 3.4018 0.001298 381.895920908108 49.777 0.32755 44.238 44.125 44.452 -5.5391 53 20 4 0 0 0 0.28047 1 31202 31202 12.241 2.8575 1 32051000 + 32593 23715 21662 22073 38390 38390 0.09561400013944876 LIPDFYAF 8 Unmodified _LIPDFYAF_ 0 0 0 nc|ENSG00000183060|Q5XG99-2|LYSMD4 nc|ENSG00000183060|Q5XG99-2|LYSMD4 nc|ENSG00000183060|Q5XG99-2|LYSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 985.4999389648438 1 985.502946 984.49567 0.72723 0.00071669 -4.2849 -0.0042228 -3.5577 -0.0035061 985.4980383181256 101.7 0.10162 95.528 95.443 95.545 -6.1757 6 4 2 0 0 0 0.65867 1 68256 68256 20.871 3.9289 1 6150900 32594 16443 21663 22074 38391 38391 0.002801681542791812 LIPEECQQFK 10 Unmodified _LIPEECQQFK_ 0 0 0 ENST00000469999.1_1_7:152064752-152065184:+|nuORF ENST00000469999.1_1_7:152064752-152065184:+|nuORF ENST00000469999.1_1_7:152064752-152065184:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 618.3541870117188 2 617.810456 1233.60636 1.1597 0.00071647 -1.4894 -0.00092019 -0.32974 -0.00020372 618.3119091068922 101.06 0.075775 94.888 94.831 94.907 -6.1757 5 3 2 0 0 0 0.14716 1 67737 67737 41.84 3.6641 1 5975000 32595 13847 21664 22075 38392 38392 -0.0010997991980730148 LIPEQQFTLA 10 Unmodified _LIPEQQFTLA_ 0 0 0 ENST00000558165.3_1_15:76552439-76552934:-|nuORF ENST00000558165.3_1_15:76552439-76552934:-|nuORF ENST00000558165.3_1_15:76552439-76552934:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3230590820312 2 580.321514 1158.62847 1.0294 0.00059738 -0.52253 -0.00030323 0.50687 0.00029415 580.3211251972928 52.31 0.30117 52.251 52.067 52.368 -0.058918 44 14 4 0 0 0 0.19566 2 28277 28277;28374 39.95 3.4435 1 19913000 32596 15273 21665 22076 38393;38394 38393 0.05550567820296237 LIPEQQFTLA 10 Unmodified _LIPEQQFTLA_ 0 0 0 ENST00000558165.3_1_15:76552439-76552934:-|nuORF ENST00000558165.3_1_15:76552439-76552934:-|nuORF ENST00000558165.3_1_15:76552439-76552934:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 580.321514 1158.62847 0.47779 0.00027727 0.70943 0.0004117 1.1872 0.00068897 580.3220235218663 52.608 0.27364 52.174 52.044 52.317 -0.43367 -0.038748 0.0010564 NaN 39.95 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4391700 32597 15273 21665 22076 0.05550567820296237 LIPERYIDL 9 Unmodified _LIPERYIDL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3242797851562 2 566.324057 1130.63356 0.27927 0.00015816 0.50754 0.00028743 0.78682 0.00044559 566.3240848032538 53.28 0.26335 53.217 53.08 53.344 -0.063423 19 12 2 0 0 0 0.15882 1 28875 28875 29.082 2.1979 1 2375000 32598 5560 21666 22077 38395 38395 0.07346871682898382 LIPFARSR 8 Unmodified _LIPFARSR_ 0 0 0 ENST00000452404.6_1_3:196669024-196669222:-|nuORF ENST00000452404.6_1_3:196669024-196669222:-|nuORF ENST00000452404.6_1_3:196669024-196669222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.29296875 2 480.292894 958.571235 0.14619 7.0213E-05 0.48142 0.00023122 0.62761 0.00030144 480.2930936987127 33.751 0.28199 33.78 33.625 33.907 0.028934 35 11 4 0 0 0 0.40035 1 17724 17724 44.407 8.3628 1 21406000 32599 13542 21667 22078 38396 38396 0.0902919012522716 LIPFARSR 8 Unmodified _LIPFARSR_ 0 0 0 ENST00000452404.6_1_3:196669024-196669222:-|nuORF ENST00000452404.6_1_3:196669024-196669222:-|nuORF ENST00000452404.6_1_3:196669024-196669222:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.292894 958.571235 -0.14499 -6.9636E-05 1.1873 0.00057026 1.0423 0.00050062 480.29349980117405 34.025 0.2501 33.834 33.694 33.944 -0.19131 0.026889 0.00037179 NaN 44.407 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3033600 32600 13542 21667 22078 0.0902919012522716 LIPHSGSHRIR 11 Unmodified _LIPHSGSHRIR_ 0 0 0 ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8685913085938 2 636.86782 1271.72109 0.50673 0.00032272 0.23688 0.00015086 0.74361 0.00047358 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 249 65 6 0 0 0 0.63851 1 44509 44509 9.3831 9.3831 1 1280500000 32601 3359 21668 22079 38397 38397 0.09609510397035592 LIPHSGSHRIR 11 Unmodified _LIPHSGSHRIR_ 0 0 0 ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD ENSG00000118231|ENST00000264376|CRYGD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 636.86782 1271.72109 0.50673 0.00032272 0.23688 0.00015086 0.74361 0.00047358 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 0 0 NaN 9.3831 249 65 6 NaN NaN NaN NaN 0 NaN NaN 0 1280500000 32602 3359 21668 22079 0.09609510397035592 LIPSNQYLF 9 Unmodified _LIPSNQYLF_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.79736328125 2 547.797675 1093.5808 0.57996 0.0003177 0.40535 0.00022205 0.9853 0.00053975 547.7978046261601 79.268 0.70557 78.782 78.461 79.167 -0.48596 125 30 6 0 0 0 0.53666 1 43294 43294 5.2307 0.90143 1 25914000 32603 16078 21669 22080 38398 38398 0.03774913620077314 LIPSNQYLF 9 Unmodified _LIPSNQYLF_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.798583984375 2 547.797675 1093.5808 0.41617 0.00022798 0.28195 0.00015445 0.69812 0.00038243 547.7978485970957 78.72 0.52213 78.772 78.49 79.012 0.052452 31 20 2 0 0 0 0.28047 1 43456 43456 18.135 2.2878 1 3504600 32604 16078 21669 22080 38399 38399 0.03774913620077314 LIPTDPVPTY 10 Unmodified _LIPTDPVPTY_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.8048706054688 2 558.30279 1114.59103 1.4735 0.00082265 3.4379 0.0019194 4.9114 0.0027421 558.3058386632042 100.06 0.10502 93.882 93.819 93.924 -6.1757 9 6 2 0 0 0 0.21952 1 66826 66826 10.824 2.9138 1 13615000 + 32605 23320 21670 22081 38400 38400 0.03831476554660185 LIQCPYRQLR 10 Unmodified _LIQCPYRQLR_ 0 0 0 REV__ENST00000378024.8_2_11:62293361-62293448:-|nuORF REV__ENST00000378024.8_2_11:62293361-62293448:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3682861328125 2 645.360982 1288.70741 3.5189 0.002271 1.3597 0.00087749 4.8786 0.0031485 645.361972082633 97.804 0.88768 97.786 97.604 98.491 -0.018188 101 32 5 0 0 0 0.60623 1 54497 54497 10.824 0 1 18243000 + 32606 26257 21671 22082 38401 38401 0.07460516573564746 LIQDRVAEV 9 Unmodified _LIQDRVAEV_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.798583984375 2 521.798206 1041.58186 0.83782 0.00043717 -0.8058 -0.00042047 0.032013 1.6705E-05 521.7979398144302 36.42 0.17626 36.42 36.311 36.487 0 13 8 2 0 0 0 0.037253 1 19334 19334 51.415 11.466 1 3527300 32607 9879 21672 22083 38402 38402 0.0627312798899311 LIQDRVAEV 9 Unmodified _LIQDRVAEV_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 521.798206 1041.58186 1.423 0.00074252 -1.3284 -0.00069314 0.094624 4.9375E-05 521.79722385985 40.905 0.2361 36.297 36.18 36.416 -4.6079 -0.061537 -0.00046537 NaN 51.415 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6761100 32608 9879 21672 22083 0.0627312798899311 LIQEVQEEDGG 11 Unmodified _LIQEVQEEDGG_ 0 0 0 ENSG00000189108|ENST00000372582|IL1RAPL2 ENSG00000189108|ENST00000372582|IL1RAPL2 ENSG00000189108|ENST00000372582|IL1RAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.1947937011719 3 406.19458 1215.56191 0.076678 3.1146E-05 -0.030409 -1.2352E-05 0.046269 1.8794E-05 406.19448111466 73.806 0.33125 73.85 73.654 73.985 0.043983 34 15 3 0 0 0 0.72981 1 40637 40637 1.4551 0.94916 1 6250100 32609 9730 21673 22084 38403 38403 -0.037247125322892316 LIQLHFGT 8 Unmodified _LIQLHFGT_ 0 0 0 REV__ENSG00000078579|ENST00000180166|FGF20 REV__ENSG00000078579|ENST00000180166|FGF20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2278747558594 2 464.766178 927.517802 0.15643 7.2704E-05 -1.8885 -0.0008777 -1.732 -0.00080499 464.76580698573173 24.012 0.2058 24.012 23.893 24.099 0 16 9 2 0 0 0 8.7369 1 12242 12242 19.439 0 1 1883400 + 32610 17630 21674 22085 38404 38404 0.051143926227155134 LIQLYPPFL 9 Unmodified _LIQLYPPFL_ 0 0 0 ENST00000566455.1_1_16:77227993-77232202:+|nuORF ENST00000566455.1_1_16:77227993-77232202:+|nuORF ENST00000566455.1_1_16:77227993-77232202:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2918701171875 2 552.328611 1102.64267 -0.057637 -3.1835E-05 -0.40552 -0.00022398 -0.46316 -0.00025581 552.3279074753566 101.03 0.084686 100.99 100.95 101.03 -0.04216 4 2 2 0 0 0 0.18941 1 56134 56134 9.3474 0 1 1900500 32611 15418 21675 22086 38405 38405 0.09545265039241713 LIQWATLLTW 10 Unmodified _LIQWATLLTW_ 0 0 0 REV__ENST00000158771.8_1_17:5377861-5377924:-|nuORF REV__ENST00000158771.8_1_17:5377861-5377924:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8536376953125 2 622.855524 1243.69649 NaN NaN NaN NaN NaN NaN NaN 72.471 1 72.513 72.013 73.013 0.041725 0 0 0 0.83454 1 39907 39907 10.8 2.0541 1 + 32612 24712 21676 22087 38406 38406 0.08439437470951816 LIQYDRTL 8 Unmodified _LIQYDRTL_ 0 0 0 ENSG00000105193|ENST00000251453|RPS16;ENST00000469078.5_1_19:20235852-20236290:+|nuORF;ENST00000602153.5_1_19:39923915-39924074:-|nuORF;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;ENST00000599705.1_1_19:39923915-39924331:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.287109375 2 511.287474 1020.5604 1.2966 0.00066295 -1.031 -0.00052712 0.26566 0.00013583 511.2869211710971 58.864 0.30035 52.79 52.635 52.935 -6.0745 26 16 2 0 0 0 0.67481 1 37843 37843 19.439 0.18201 1 18361000 32613 2285 21677 22088 38407 38407 0.05093742960275449 LIRCHVVLWD 10 Unmodified _LIRCHVVLWD_ 0 0 0 ENST00000301831.8_1_3:41795951-41831237:-|nuORF ENST00000301831.8_1_3:41795951-41831237:-|nuORF ENST00000301831.8_1_3:41795951-41831237:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3469848632812 2 627.3448 1252.67505 NaN NaN NaN NaN NaN NaN NaN 75.741 1 75.264 74.764 75.764 -0.47714 0 0 0 0.99091 1 41462 41462 1.6526 0 1 32614 11576 21678 22089 38408 38408 0.05881729170573635 LIRGLPDV 8 Unmodified _LIRGLPDV_ 0 0 0 nc|ENSG00000164053|Q8WXE1-5|ATRIP;nc|ENSG00000164053|Q8WXE1-3|ATRIP;nc|ENSG00000164053|Q8WXE1-2|ATRIP;ENSG00000164053|ENST00000320211|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP nc|ENSG00000164053|Q8WXE1-5|ATRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7733764648438 2 441.774003 881.533452 0.59604 0.00026331 -0.43441 -0.00019191 0.16163 7.1404E-05 441.773680518046 78.242 0.30815 78.295 78.134 78.442 0.052452 25 12 3 0 0 0 0.48669 1 43196 43196 36.044 5.8194 1 2613000 32615 7124 21679 22090 38409 38409 0.08794679139748496 LIRGPHAQLWA 11 Unmodified _LIRGPHAQLWA_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.226806640625 3 421.243652 1260.70913 1.5225 0.00064132 3.3422 0.0014079 4.8647 0.0020492 421.24495624956813 37.303 0.24821 33.02 32.908 33.156 -4.2835 19 14 2 0 0 0 0.30584 1 21927 21927 1.3296 0.11481 1 5556000 + 32616 19026 21680 22091 38410 38410 0.08919893653842337 LIRIRDDA 8 Unmodified _LIRIRDDA_ 0 0 0 nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2862548828125 2 486.285266 970.555979 2.4266 0.00118 -1.0118 -0.00049203 1.4148 0.00068799 486.28467484863165 95.997 0.46617 96.001 95.737 96.203 0.0041504 24 16 2 0 0 0 0.80992 1 53283 53283 0.69038 0 1 3137600 32617 6077 21681 22092 38411 38411 0.0695227853735787 LIRIRRRIKV 10 Unmodified _LIRIRRRIKV_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.9644165039062 2 661.964597 1321.91464 NaN NaN NaN NaN NaN NaN NaN 16.664 1 16.669 16.169 17.169 0.0050564 0 0 0 1.0061 1 8367 8367 0 0 1 + 32618 18428 21682 22093 38412 38412 0.26656091903896595 LIRPVSASF 9 Unmodified _LIRPVSASF_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1 ENST00000513781.5_1_17:46970480-46973128:+|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2969360351562 2 495.292559 988.570566 0.59497 0.00029469 3.877 0.0019202 4.4719 0.0022149 495.2948635572859 48.124 0.11594 48.085 48.026 48.142 -0.038643 10 5 2 0 0 0 0.047788 1 25964 25964 45.7 11.512 1 1211800 32619 6632 21683 22094 38413 38413 0.07582350685515848 LIRSGRVPI 9 Unmodified _LIRSGRVPI_ 0 0 0 ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000525846.6_1_16:18437791-18443539:-|nuORF;ENST00000532415.5_1_16:18477017-18479494:-|nuORF;ENST00000483731.5_1_16:2153201-2162466:-|nuORF;ENST00000532739.1_1_16:16461165-16462877:+|nuORF;ENST00000486339.6_1_16:2155757-2157078:-|nuORF;ENST00000496574.6_1_16:2155621-2157078:-|nuORF;ENST00000343738.10_1_16:15227853-15229959:-|nuORF;ENST00000415938.7_1_16:2152605-2162466:-|nuORF ENSG00000008710|ENST00000262304|PKD1;ENST00000415938.7_1_16:2152605-2162466:-|nuORF ENSG00000008710|ENST00000262304|PKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3289489746094 2 505.827101 1009.63965 0.2609 0.00013197 0.3878 0.00019616 0.64869 0.00032813 505.8269357674515 42.216 0.19555 42.208 42.123 42.318 -0.0088196 12 8 2 0 0 0 0.45045 1 22624 22624 10.074 2.1638 1 4567700 32620 395;13033 21684 22095 38414 38414 0.13521434705091906 LISAVLEKQTL 11 Unmodified _LISAVLEKQTL_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5832214355469 3 405.583339 1213.72819 NaN NaN NaN NaN NaN NaN NaN 34.767 1 34.795 34.295 35.295 0.027401 0 0 0 0.93777 1 18346 18346 4.1166 0.79699 1 32621 9284 21685 22096 38415 38415 0.12987385434234966 LISCFSQHLHT 11 Unmodified _LISCFSQHLHT_ 0 0 0 REV__ENST00000409806.7_2_6:149782983-149783055:-|nuORF REV__ENST00000409806.7_2_6:149782983-149783055:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 429.215087890625 3 429.216774 1284.62849 NaN NaN NaN NaN NaN NaN NaN 40.13 1 35.601 35.101 36.101 -4.5294 0 0 0 0.81193 1 23925 23925 6.2344 1.8282 1 + 32622 26701 21686 22097 38416 38416 -0.0024375545135626453 LISFKATLL 9 Unmodified _LISFKATLL_ 0 0 0 REV__nc|ENSG00000076706|P43121-2|MCAM REV__nc|ENSG00000076706|P43121-2|MCAM MSMS AL20221201_MKP_PDAC_01 4 503.3199768066406 2 503.320786 1004.62702 NaN NaN NaN NaN NaN NaN NaN 37.611 1 33.242 32.742 33.742 -4.3689 0 0 0 0.53226 1 22093 22093 14.838 0.25658 1 + 32623 29508 21687 22098 38417 38417 0.12488978522196703 LISKATAL 8 Unmodified _LISKATAL_ 0 0 0 REV__ENSG00000177602|ENST00000325418|HASPIN REV__ENSG00000177602|ENST00000325418|HASPIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7631225585938 2 408.763104 815.511654 0.5305 0.00021685 -0.60404 -0.00024691 -0.073543 -3.0062E-05 408.7628172790156 36.524 0.30175 36.524 36.388 36.69 0 35 14 3 0 0 0 0.38465 1 19452 19452 46.021 0 1 20562000 + 32624 22995 21688 22099 38418 38418 0.09651874391170168 LISLMYTLFL 10 Unmodified _LISLMYTLFL_ 0 0 0 REV__ENSG00000179626|ENST00000641569|OR6C4 REV__ENSG00000179626|ENST00000641569|OR6C4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 405.5453796386719 3 405.234883 1212.68282 1.287 0.00052155 -0.52548 -0.00021294 0.76155 0.00030861 405.2346756880999 40.821 0.39688 36.292 36.097 36.494 -4.5294 36 24 2 0 0 0 0.22728 1 24511 24511 17.443 2.4855 1 11633000 + 32625 23106 21689 22100 38419 38419 0.08498443647476961 LISLPLVPGF 10 Unmodified _LISLPLVPGF_ 0 0 0 nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2 nc|ENSG00000100320|O43251-10|RBFOX2 nc|ENSG00000100320|O43251-10|RBFOX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.5804443359375 2 528.328611 1054.64267 1.0268 0.0005425 -2.4642 -0.0013019 -1.4374 -0.00075943 528.3276128125948 71.258 0.13629 71.297 71.208 71.344 0.039024 7 5 2 0 0 0 0.23489 1 39205 39205 4.3292 0 1 336970 32626 16084 21690 22101 38420 38420 0.11753265039237704 LISVYDEYIL 10 Unmodified _LISVYDEYIL_ 0 0 0 REV__ENSG00000171700|ENST00000395042|RGS19 REV__ENSG00000171700|ENST00000395042|RGS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8883361816406 3 409.888429 1226.64346 -0.12043 -4.9363E-05 -0.11164 -4.5759E-05 -0.23207 -9.5122E-05 409.8883463757486 19.497 0.097214 19.505 19.432 19.529 0.0078487 8 5 2 0 0 0 0.69377 1 9932 9932 1.7423 0 1 543450 + 32627 22590 21691 22102 38421 38421 0.03920014897630608 LITFLRETF 9 Unmodified _LITFLRETF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MSMS AL20221201_MKP_PDAC_01 4 570.3245849609375 2 570.326599 1138.63865 NaN NaN NaN NaN NaN NaN NaN 57.631 1 51.604 51.104 52.104 -6.0275 0 0 0 0.6032 1 36865 36865 12.532 1.7076 1 32628 5216 21692 22103 38422 38422 0.07487175545520586 LITLPHGHQL 10 Unmodified _LITLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8896484375 3 376.888986 1127.64513 0.81181 0.00030596 -0.15742 -5.9329E-05 0.6544 0.00024663 376.88885611993527 49.913 0.39784 49.521 49.313 49.711 -0.3923 48 19 3 0 0 0 0.56348 1 26789 26789 11.518 4.4808 1 25371000 32629 4988 21693 22104 38423 38423 0.08641113496878461 LITLPHGHQL 10 Unmodified _LITLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.88916015625 3 376.888986 1127.64513 0.79489 0.00029958 -0.91811 -0.00034603 -0.12323 -4.6442E-05 376.8886566936771 49.561 0.43317 49.512 49.31 49.743 -0.048824 54 21 4 0 0 0 0.62068 2 26731 26731;26834 17.443 9.8337 1 18124000 32630 4988 21693 22104 38424;38425 38424 0.08641113496878461 LITLPHGHQL 10 Unmodified _LITLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8895874023438 3 376.888986 1127.64513 1.235 0.00046547 -0.031681 -1.194E-05 1.2034 0.00045353 376.88898726163 54.611 0.48621 48.746 48.542 49.029 -5.8653 61 29 3 0 0 0 0.38092 1 34558 34558 19.626 0.90473 1 62852000 32631 4988 21693 22104 38426 38426 0.08641113496878461 LIVELVVNK 9 Unmodified _LIVELVVNK_ 0 0 0 nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1 nc|ENSG00000008056|P17600-2|SYN1 nc|ENSG00000008056|P17600-2|SYN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.3255004882812 2 513.831517 1025.64848 1.475 0.00075791 -3.4888 -0.0017927 -2.0138 -0.0010348 513.8282340981666 103.83 0.039993 97.658 97.638 97.678 -6.1757 13 12 2 0 0 0 0.21834 1 69575 69575 1.8442 0 1 2340700 32632 375 21694 22105 38427 38427 0.13668363550914364 LIVKDKTVGV 10 Unmodified _LIVKDKTVGV_ 0 0 0 ENSG00000182271|ENST00000328886|TMIGD1 ENSG00000182271|ENST00000328886|TMIGD1 ENSG00000182271|ENST00000328886|TMIGD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8979187011719 3 357.897258 1070.66995 1.8231 0.00065247 0.3329 0.00011914 2.156 0.00077161 357.89730720660253 20.408 0.48318 17.715 17.494 17.977 -2.693 98 28 5 0 0 0 0.10424 1 10782 10782 32.898 0 1 163700000 32633 9041 21695 22106 38428 38428 0.1374374857962266 LIVLDWSL 8 Unmodified _LIVLDWSL_ 0 0 0 REV__ENST00000376773.5_1_6:30037339-30037405:+|nuORF REV__ENST00000376773.5_1_6:30037339-30037405:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.7850341796875 2 479.784036 957.553519 NaN NaN NaN NaN NaN NaN NaN 81.944 1 75.768 75.268 76.268 -6.1757 0 0 0 0.9249 1 53809 53809 15.768 2.2603 1 + 32634 26230 21696 22107 38429 38429 0.07304430079705071 LIVLTGSESPI 11 Unmodified _LIVLTGSESPI_ 0 0 0 ENST00000585864.1_1_18:56807180-56819918:+|nuORF;ENSG00000166562|ENST00000587834|SEC11C ENST00000585864.1_1_18:56807180-56819918:+|nuORF ENST00000585864.1_1_18:56807180-56819918:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8891296386719 3 376.88854 1127.64379 0.81181 0.00030596 1.0254 0.00038647 1.8372 0.00069244 376.88885611993527 49.913 0.39784 49.521 49.313 49.711 -0.3923 48 19 3 0 0 0 0.65108 1 26894 26894 4.4062 0.21665 1 25371000 32635 7509 21697 22108 38430 38430 0.0850743461746788 LIVSVRHM 8 Unmodified _LIVSVRHM_ 0 0 0 REV__ENST00000512584.5_1_4:156828908-156831355:+|nuORF REV__ENST00000512584.5_1_4:156828908-156831355:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.781005859375 2 477.781305 953.548056 0.077952 3.7244E-05 -1.4151 -0.00067609 -1.3371 -0.00063884 477.78063593589843 41.21 0.33026 41.208 41.008 41.338 -0.0017929 30 15 3 0 0 0 0.80311 1 21971 21971 4.756 2.1785 1 2853900 + 32636 21091 21698 22109 38431 38431 0.06942428016259328 LIVVMLHSGC 10 Unmodified _LIVVMLHSGC_ 0 0 0 REV__ENSG00000166368|ENST00000299459|OR2D2 REV__ENSG00000166368|ENST00000299459|OR2D2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7651977539062 2 536.288105 1070.56166 0.41291 0.00022144 -0.047929 -2.5704E-05 0.36498 0.00019573 536.2881512036239 85.959 0.17804 85.456 85.366 85.544 -0.50318 12 6 2 0 0 0 0.22993 1 47003 47003 7.9102 2.6795 1 200740 + 32637 22111 21699 22110 38432 38432 0.029199177331747705 LIWDVRCY 8 Unmodified _LIWDVRCY_ 0 0 0 nc|ENSG00000134242|Q9Y2R2-2|PTPN22;ENST00000484147.5_1_1:114375712-114414257:-|nuORF;nc|ENSG00000134242|Q9Y2R2-3|PTPN22;nc|ENSG00000134242|Q9Y2R2-4|PTPN22;nc|ENSG00000134242|Q9Y2R2|PTPN22;ENSG00000134242|ENST00000359785|PTPN22 nc|ENSG00000134242|Q9Y2R2-2|PTPN22 nc|ENSG00000134242|Q9Y2R2-2|PTPN22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7713623046875 2 534.27077 1066.52699 -0.31278 -0.00016711 -3.1129 -0.0016631 -3.4257 -0.0018302 534.770964578279 26.458 0.26813 26.458 26.283 26.551 0 17 12 2 0 0 0 0.78849 1 13538 13538 9.3474 4.1168 1 1384100 32638 4573 21700 22111 38433 38433 -0.0036158208329197805 LIWPSEWQM 9 Unmodified _LIWPSEWQM_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-5|USP48;ENST00000464577.1_1_1:22028060-22030944:-|nuORF nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2909545898438 2 595.289159 1188.56377 NaN NaN NaN NaN NaN NaN NaN 69.768 1 69.289 68.789 69.789 -0.47903 0 0 0 0.6306 1 38141 38141 11.64 0 1 32639 1567 21701 22112 38434 38434 -0.022973302573973342 LIWTVTPSPRG 11 Unmodified _LIWTVTPSPRG_ 0 0 0 REV__ENSG00000152580|ENST00000282466|IGSF10 REV__ENSG00000152580|ENST00000282466|IGSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.8491821289062 2 613.84823 1225.68191 0.68526 0.00042064 -0.68025 -0.00041757 0.0050116 3.0764E-06 614.3492892098158 69.37 0.41901 69.401 69.227 69.646 0.030914 39 23 2 0 0 0 0.39848 1 38089 38089 21.59 1.1756 1 18200000 + 32640 21126 21702 22113 38435 38435 0.07809365322782469 LIWVNQMLAF 10 Unmodified _LIWVNQMLAF_ 0 0 0 REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.2281188964844 3 412.22661 1233.658 NaN NaN NaN NaN NaN NaN NaN 16.247 1 13.69 13.19 14.19 -2.557 0 0 0 0.96756 1 8403 8403 4.1895 0.60244 1 + 32641 28277 21703 22114 38436 38436 0.050518085647581756 LIYHDNCMF 9 Unmodified _LIYHDNCMF_ 0 0 0 REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF REV__ENST00000492730.1_1_1:207262876-207265203:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8381652832031 3 385.836905 1154.48889 NaN NaN NaN NaN NaN NaN NaN 42.09 1 42.09 41.59 42.59 0 0 0 0 0.81228 1 22764 22764 3.5871 0 1 + 32642 19405 21704 22115 38437 38437 -0.08217836060248374 LIYIYSIAI 9 Unmodified _LIYIYSIAI_ 0 0 0 REV__ENSG00000182334|ENST00000641167|OR5P3 REV__ENSG00000182334|ENST00000641167|OR5P3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8838500976562 3 356.882838 1067.62668 1.2288 0.00043856 0.7413 0.00026456 1.9701 0.00070311 356.8832602407568 17.863 0.21877 15.276 15.144 15.362 -2.5866 42 20 3 0 0 0 0.30562 1 9358 9358 16.149 7.9936 1 5288200 + 32643 23265 21705 22116 38438 38438 0.09557558802316635 LIYMANMVGNL 11 Unmodified _LIYMANMVGNL_ 0 0 0 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.8173217773438 2 619.817227 1237.6199 0.56782 0.00035194 0.51263 0.00031774 1.0805 0.00066968 619.8177079757098 39.734 0.24689 39.739 39.647 39.894 0.0050545 19 11 2 0 0 0 0.10551 1 21174 21174 41.84 5.7126 1 2762300 32644 8222 21706 22117 38439 38439 0.010595545878004486 LIYNRDFI 8 Unmodified _LIYNRDFI_ 0 0 0 nc|ENSG00000101901|Q9NP73-4|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2914428710938 2 527.290017 1052.56548 NaN NaN NaN NaN NaN NaN NaN 102.37 1 102.32 101.82 102.82 -0.045853 0 0 0 0.94749 1 56862 56862 11.114 0 1 32645 1998 21707 22118 38440 38440 0.04130046822888289 LIYRKMRI 8 Unmodified _LIYRKMRI_ 0 0 0 REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.83984375 2 546.839154 1091.66375 0.27574 0.00015079 1.8899 0.0010335 2.1657 0.0011843 546.8400447743338 92.957 0.32768 92.499 92.356 92.683 -0.4574 24 18 2 0 0 0 0.80992 1 50860 50860 0.69038 0.088878 1 479170 + 32646 20852 21708 22119 38441 38441 0.12158951867104406 LIYRKMRI 8 Unmodified _LIYRKMRI_ 0 0 0 REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8409423828125 2 546.839154 1091.66375 1.5517 0.00084856 1.2341 0.00067486 2.7859 0.0015234 546.8396675763007 92.502 0.66565 92.532 92.259 92.925 0.030197 89 25 5 0 0 0 0.80676 1 51355 51355 2.5775 1.7838 1 179890000 + 32647 20852 21708 22119 38442 38442 0.12158951867104406 LKAEQTILPL 10 Unmodified _LKAEQTILPL_ 0 0 0 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.900146484375 3 375.90078 1124.68051 0.02113 7.943E-06 -1.9846 -0.00074601 -1.9634 -0.00073806 375.90023993254533 16.492 0.22956 16.497 16.357 16.587 0.0050564 16 13 2 0 0 0 0.65891 1 8291 8291 7.4771 0.18784 1 719570 32648 9842 21709 22120 38443 38443 0.12315731234048144 LKAKKPQKRKP 11 Unmodified _LKAKKPQKRKP_ 0 0 0 ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2977600097656 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 8.8207 1 8.7292 8.2292 9.2292 -0.09156 0 0 0 0.94337 1 4321 4321 0.094841 0.094841 1 32649 13722 21710 22121 38444 38444 0.22417277055819795 LKAKKPQKRKP 11 Unmodified _LKAKKPQKRKP_ 0 0 0 ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2979431152344 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 2.2156 1 2.1986 1.6986 2.6986 -0.017019 0 0 0 0.94337 1 1131 1131 0.094841 0.094841 1 32650 13722 21710 22121 38445 38445 0.22417277055819795 LKAKKPQKRKP 11 Unmodified _LKAKKPQKRKP_ 0 0 0 ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF ENST00000464696.2_1_12:83545187-83545313:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2973937988281 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 107.54 1 101.37 100.87 101.87 -6.1757 0 0 0 0.94337 1 71921 71921 0.094841 0.021578 1 32651 13722 21710 22121 38446 38446 0.22417277055819795 LKAKLERIT 9 Unmodified _LKAKLERIT_ 0 0 0 REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.347900390625 2 536.347866 1070.68118 1.4845 0.00079621 -1.0067 -0.00053997 0.47775 0.00025624 536.3475933682397 103.4 0.15577 97.22 97.158 97.314 -6.1757 57 27 3 0 0 0 0.59532 1 69302 69302 1.6526 1.1279 1 16563000 + 32652 21350 21711 22122 38447 38447 0.1486657067375745 LKAPLRVHI 9 Unmodified _LKAPLRVHI_ 0 0 0 ENSG00000122133|ENST00000479141|PAEP ENSG00000122133|ENST00000479141|PAEP ENSG00000122133|ENST00000479141|PAEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8466186523438 2 523.845294 1045.67603 1.6421 0.00086021 -0.90486 -0.00047401 0.73725 0.0003862 523.844894535889 106.31 0.98497 100.13 99.666 100.65 -6.1757 386 160 3 0 0 0 0.59218 3 71327 71107;71216;71327 1.8442 0 1 11181000 32653 3624 21712 22123 38448;38449;38450 38450 0.15502311601790097 LKAYDKLLLF 10 Unmodified _LKAYDKLLLF_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.26611328125 2 612.373549 1222.73255 0.96698 0.00059215 0.33552 0.00020546 1.3025 0.00079761 612.3735438892568 70.409 0.23505 70.444 70.336 70.571 0.035507 16 10 2 0 0 0 0.23693 1 38729 38729 6.2058 0 1 1168000 + 32654 19262 21713 22124 38451 38451 0.13008894647782654 LKDCEECIQL 10 Unmodified _LKDCEECIQL_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7813720703125 2 597.280674 1192.5468 -0.38395 -0.00022933 0.23293 0.00013912 -0.15103 -9.0204E-05 597.2808032555823 71.261 0.2729 71.261 71.09 71.363 0 20 13 2 0 0 0 0.52888 1 39675 39675 14.838 0 1 638150 32655 7765 21714 22125 38452 38452 -0.041776189254733254 LKDEWAKQD 9 Unmodified _LKDEWAKQD_ 0 0 0 REV__ENSG00000185038|ENST00000389758|MROH2A REV__ENSG00000185038|ENST00000389758|MROH2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.1937255859375 3 378.192623 1131.55604 1.2211 0.00046183 0.93605 0.00035401 2.1572 0.00081583 378.19273223742766 18.513 0.33929 15.892 15.69 16.03 -2.6215 68 33 3 0 0 0 0.55373 1 9731 9731 4.1895 0.60244 1 6411400 + 32656 23466 21715 22126 38453 38453 -0.004477662532735849 LKDIGFDEC 9 Unmodified _LKDIGFDEC_ 0 0 0 ENSG00000181074|ENST00000641350|OR52N4 ENSG00000181074|ENST00000641350|OR52N4 ENSG00000181074|ENST00000641350|OR52N4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2763671875 2 520.241875 1038.4692 0.17319 9.0102E-05 1.7604 0.00091585 1.9336 0.001006 520.2427808669762 55.095 0.18236 54.617 54.509 54.691 -0.47798 12 8 2 0 0 0 0.20358 1 29894 29894 6.2058 0 1 2027800 32657 8949 21716 22127 38454 38454 -0.04849888799344626 LKDMNPDNY 9 Unmodified _LKDMNPDNY_ 0 0 0 ENSG00000148935|ENST00000454584|GAS2 ENSG00000148935|ENST00000454584|GAS2 ENSG00000148935|ENST00000454584|GAS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.7747802734375 2 555.250231 1108.48591 1.024 0.00056856 1.2619 0.00070068 2.2859 0.0012692 555.7519222781282 60.153 0.56137 54.039 53.796 54.357 -6.1147 48 29 2 0 0 0 0.18882 1 38724 38724 10.824 0 1 60048000 32658 5975 21717 22128 38455 38455 -0.06399387913415922 LKDRKKRERKF 11 Unmodified _LKDRKKRERKF_ 0 0 0 ENST00000394507.5_2_7:91870378-91871424:-|nuORF ENST00000394507.5_2_7:91870378-91871424:-|nuORF ENST00000394507.5_2_7:91870378-91871424:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3153686523438 3 501.979198 1502.91576 0.91298 0.0004583 1.625 0.00081571 2.538 0.001274 501.9801080616584 98.558 0.15755 92.382 92.308 92.465 -6.1757 27 11 3 0 0 0 0.73115 1 65369 65369 0.45452 0.046251 1 102570000 32659 12743 21718 22129 38456 38456 0.18442261482164213 LKDVSKVKKL 10 Unmodified _LKDVSKVKKL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3836059570312 2 579.384448 1156.75434 1.5847 0.00091817 -0.48519 -0.00028111 1.0995 0.00063706 579.3841344732122 103.99 0.10037 97.815 97.739 97.839 -6.1757 49 35 2 0 0 0 0.71276 1 69661 69661 1.4819 0.8804 1 11383000 32660 3537 21719 22130 38457 38457 0.1822369939636701 LKEADNGWI 9 Unmodified _LKEADNGWI_ 0 0 0 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7987060546875 2 523.269281 1044.52401 0.29619 0.00015499 4.4808 0.0023447 4.777 0.0024997 523.2711458905289 52.389 0.13241 52.389 52.311 52.443 0 8 5 2 0 0 0 0.16895 1 29013 29013 18.146 2.2992 1 678540 + 32661 18601 21720 22131 38458 38458 0.0035286606357658457 LKEAIISSFNS 11 Unmodified _LKEAIISSFNS_ 0 0 0 REV__nc|ENSG00000184634|Q93074-3|MED12 REV__nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5563049316406 3 403.555561 1207.64485 0.87278 0.00035222 0.44705 0.00018041 1.3198 0.00053263 403.55559678648456 50.613 0.24651 50.2 50.072 50.318 -0.41351 23 11 3 0 0 0 0.72311 1 27279 27279 2.084 1.3074 1 1678400 + 32662 23432 21721 22132 38459 38459 0.049336489863890165 LKEDRHVRL 9 Unmodified _LKEDRHVRL_ 0 0 0 REV__ENSG00000197779|ENST00000338637|ZNF81 REV__ENSG00000197779|ENST00000338637|ZNF81 MSMS AL20221201_MKP_PDAC_01 4 389.2306823730469 3 389.231523 1164.67274 NaN NaN NaN NaN NaN NaN NaN 15.977 1 13.42 12.92 13.92 -2.557 0 0 0 0.69506 1 8244 8244 9.544 1.3884 1 + 32663 23958 21722 22133 38460 38460 0.09699016757144818 LKEEAEKV 8 Unmodified _LKEEAEKV_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.27001953125 2 473.266207 944.517862 0.645 0.00030526 0.050753 2.402E-05 0.69575 0.00032928 473.26584302536173 52.399 0.31172 51.965 51.789 52.101 -0.43367 30 15 3 0 0 0 0.79783 1 28271 28271 7.9102 0 1 4520400 + 32664 21053 21723 22134 38461 38461 0.04338347832049294 LKEETGLSY 9 Unmodified _LKEETGLSY_ 0 0 0 SYNPO2|p.P162L|1|0.15|ENSG00000172403|chr4:119026854-119026854|C/T|missense_variant SYNPO2|p.P162L|1|0.15|ENSG00000172403|chr4:119026854-119026854|C/T|missense_variant SYNPO2|p.P162L|1|0.15|ENSG00000172403|chr4:119026854-119026854|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.27099609375 2 520.268947 1038.52334 0.69733 0.0003628 1.1863 0.00061718 1.8836 0.00097998 520.2696305316368 43.891 0.50072 39.127 38.772 39.273 -4.7648 77 31 3 0 0 0 0.1773 1 26761 26761 25.399 1.3787 1 69408000 32665 30180 21724 22135 38462 38462 0.005620266238793192 LKEIRQRKIE 10 Unmodified _LKEIRQRKIE_ 0 0 0 REV__ENSG00000157856|ENST00000288710|DRC1 REV__ENSG00000157856|ENST00000288710|DRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.6096801757812 3 438.273499 1311.79867 1.99 0.00087215 -2.5069 -0.0010987 -0.51693 -0.00022656 438.2722834171085 100.26 0.1431 100.22 100.12 100.27 -0.036301 15 4 4 0 0 0 0.72044 1 55688 55688 0.62683 0 1 16509000 + 32666 21404 21725 22136 38463 38463 0.15524103542543344 LKEKAKKRKGR 11 Unmodified _LKEKAKKRKGR_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.9468994140625 2 671.443695 1340.87284 1.3306 0.00089345 0.28186 0.00018925 1.6125 0.0010827 671.4431787757028 104.26 0.089493 98.088 98.032 98.122 -6.1757 7 4 2 0 0 0 0.7326 1 69851 69851 1.1933 0.12188 1 7152700 32667 10859 21726 22137 38464 38464 0.216034914247075 LKEKAKKRKGR 11 Unmodified _LKEKAKKRKGR_ 0 0 0 nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A nc|ENSG00000265241|Q9Y5S9-2|RBM8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.4439086914062 2 671.443695 1340.87284 1.3329 0.00089499 0.17848 0.00011984 1.5114 0.0010148 671.4435500887058 105.02 0.16206 98.844 98.749 98.911 -6.1757 41 14 4 0 0 0 0.7326 1 70288 70288 1.1933 0.79263 1 264790000 32668 10859 21726 22137 38465 38465 0.216034914247075 LKEKELLL 8 Unmodified _LKEKELLL_ 0 0 0 REV__ENSG00000134323|ENST00000281043|MYCN REV__ENSG00000134323|ENST00000281043|MYCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3193969726562 2 493.318243 984.621933 -0.31286 -0.00015434 1.0138 0.00050011 0.70092 0.00034578 493.31883453482783 78.246 0.23155 77.76 77.632 77.864 -0.48596 13 9 2 0 0 0 0.6895 1 42857 42857 18.135 0 1 638630 + 32669 19975 21727 22138 38466 38466 0.12900674659567812 LKEKSEKMV 9 Unmodified _LKEKSEKMV_ 0 0 0 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3092041015625 2 546.310092 1090.60563 NaN NaN NaN NaN NaN NaN NaN 22.978 1 22.978 22.478 23.478 0 0 0 0 0.84211 1 11701 11701 1.8442 0 1 + 32670 19937 21728 22139 38467 38467 0.0639522543115163 LKEKSPIWI 9 Unmodified _LKEKSPIWI_ 0 0 0 REV__nc|ENSG00000150672|Q15700|DLG2 REV__nc|ENSG00000150672|Q15700|DLG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.89404296875 3 371.893737 1112.65938 1.6514 0.00061413 -0.32506 -0.00012089 1.3263 0.00049324 371.89372970409045 87.566 0.54669 81.391 81.182 81.729 -6.1757 68 29 3 0 0 0 0.53557 1 57827 57827 5.2969 0 1 25685000 + 32671 21032 21729 22140 38468 38468 0.10755765925182459 LKELLIQIF 9 Unmodified _LKELLIQIF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.9065246582031 3 372.905754 1115.69543 0.73199 0.00027296 0.20595 7.6799E-05 0.93794 0.00034976 372.90580411373145 57.531 0.7976 57.465 56.998 57.795 -0.066032 97 39 3 0 0 0 0.44883 1 31376 31376 10.151 0 1 6765700 32672 2970 21730 22141 38469 38469 0.14221223102049407 LKEMSEYYF 9 Unmodified _LKEMSEYYF_ 0 0 0 ENST00000473224.1_1_10:26994293-27009094:+|nuORF;nc|ENSG00000148459|Q5T2R2-2|PDSS1;nc|ENSG00000148459|Q5T2R2-3|PDSS1;ENSG00000148459|ENST00000376215|PDSS1 ENST00000473224.1_1_10:26994293-27009094:+|nuORF ENST00000473224.1_1_10:26994293-27009094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2762451171875 2 605.278457 1208.54236 NaN NaN NaN NaN NaN NaN NaN 89.885 1 89.383 88.883 89.883 -0.50171 0 0 0 0.7818 1 49138 49138 6.7232 1.9672 1 32673 5935 21731 22142 38470 38470 -0.05356760076756473 LKERKHKPQ 9 Unmodified _LKERKHKPQ_ 0 0 0 ENSG00000204954|ENST00000378090|UQCC6;ENST00000543740.6_1_12:104345303-104359310:-|nuORF;ENST00000552460.1_1_12:104345303-104349535:-|nuORF ENSG00000204954|ENST00000378090|UQCC6 ENSG00000204954|ENST00000378090|UQCC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.571533203125 3 388.571768 1162.69348 0.043351 1.6845E-05 -0.50867 -0.00019765 -0.46532 -0.00018081 388.5714769355668 96.888 0.2141 96.888 96.717 96.931 0 21 12 2 0 0 0 0.61903 1 53512 53512 0.20686 0.047535 1 385220 32674 10339 21732 22143 38471 38471 0.11863607136797327 LKERKHKPQ 9 Unmodified _LKERKHKPQ_ 0 0 0 ENSG00000204954|ENST00000378090|UQCC6;ENST00000543740.6_1_12:104345303-104359310:-|nuORF;ENST00000552460.1_1_12:104345303-104349535:-|nuORF ENSG00000204954|ENST00000378090|UQCC6 ENSG00000204954|ENST00000378090|UQCC6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 388.571768 1162.69348 0.043351 1.6845E-05 -0.50867 -0.00019765 -0.46532 -0.00018081 388.5714769355668 96.888 0.2141 96.888 96.717 96.931 0 0 0 NaN 0.20686 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 385220 32675 10339 21732 22143 0.11863607136797327 LKERKRIKRA 10 Unmodified _LKERKRIKRA_ 0 0 0 ENSG00000163590|ENST00000498165|PPM1L;nc|ENSG00000163590|Q5SGD2-2|PPM1L;nc|ENSG00000163590|Q5SGD2-3|PPM1L ENSG00000163590|ENST00000498165|PPM1L ENSG00000163590|ENST00000498165|PPM1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.4315795898438 2 649.430587 1296.84662 1.5159 0.00098446 0.04992 3.242E-05 1.5658 0.0010169 649.4305725915829 105.05 0.16279 98.879 98.773 98.936 -6.1757 41 16 3 0 0 0 0.71276 1 70323 70323 1.4819 0 1 273920000 32676 7024 21733 22144 38472 38472 0.21007222253228974 LKERLKLVLDV 11 Unmodified _LKERLKLVLDV_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.429443359375 2 663.429387 1324.84422 1.2205 0.00080973 -0.57722 -0.00038294 0.6433 0.00042679 663.4287898334229 105.69 0.71431 99.513 99.324 100.04 -6.1757 251 80 5 0 0 0 0.7326 1 70859 70859 1.1933 0 1 46970000 + 32677 24231 21734 22145 38473 38473 0.1947932900491196 LKERLLAIRR 10 Unmodified _LKERLLAIRR_ 0 0 0 nc|ENSG00000170500|Q1L5Z9-2|LONRF2;ENSG00000170500|ENST00000393437|LONRF2 nc|ENSG00000170500|Q1L5Z9-2|LONRF2 nc|ENSG00000170500|Q1L5Z9-2|LONRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.4193115234375 2 634.419688 1266.82482 1.4027 0.00088989 -1.6694 -0.0010591 -0.26673 -0.00016922 634.418503011124 103.25 0.086632 97.074 97.036 97.122 -6.1757 41 25 2 0 0 0 0.72292 1 69241 69241 0.35063 0 1 5303100 32678 7995 21735 22146 38474 38474 0.20208417504659337 LKERVKVRPR 10 Unmodified _LKERVKVRPR_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.9190673828125 2 640.917313 1279.82007 1.3876 0.00088936 0.18548 0.00011888 1.5731 0.0010082 640.9172478980723 105.05 0.18311 98.871 98.773 98.956 -6.1757 82 22 5 0 0 0 0.71276 1 70310 70310 1.4819 0.15237 1 1587099999.9999998 + 32679 29885 21736 22147 38475 38475 0.19135533361918533 LKERVKVRPR 10 Unmodified _LKERVKVRPR_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.6143798828125 3 427.613967 1279.82007 1.7363 0.00074247 0.32424 0.00013865 2.0605 0.00088112 427.61386336214 105.05 0.08989 98.877 98.828 98.918 -6.1757 16 9 2 0 0 0 0.71276 1 70339 70339 0.62683 0.17231 1 51093000 + 32680 29885 21736 22147 38476 38476 0.19135533361918533 LKESVERLR 9 Unmodified _LKESVERLR_ 0 0 0 REV__nc|ENSG00000104517|O95071-2|UBR5 REV__nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5627136230469 3 377.227779 1128.66151 0.75661 0.00028541 1.006 0.00037947 1.7626 0.00066489 377.22824402991904 22.847 0.32993 20.069 19.887 20.217 -2.7784 52 24 3 0 0 0 0.37578 1 12251 12251 13.615 1.4401 1 21081000 + 32681 18361 21737 22148 38477 38477 0.10232194662967231 LKEYQKQHDH 10 Unmodified _LKEYQKQHDH_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.8373413085938 2 663.333476 1324.6524 -0.078486 -5.2062E-05 1.7678 0.0011726 1.6893 0.0011206 663.334309383731 72.172 0.20424 72.172 72.054 72.258 0 13 9 2 0 0 0 0.71413 1 40208 40208 1.3295 0.13619 1 830560 32682 16031 21738 22149 38478 38478 0.0030580130667203775 LKFCKYKC 8 Unmodified _LKFCKYKC_ 0 0 0 REV__ENST00000484047.5_1_21:38460539-38463784:+|nuORF REV__ENST00000484047.5_1_21:38460539-38463784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7728881835938 2 516.772091 1031.52963 0.28616 0.00014788 1.3428 0.0006939 1.6289 0.00084178 516.772965690729 76.59 0.36721 76.59 76.341 76.708 0 19 14 2 0 0 0 0.80676 1 42561 42561 2.5775 0 1 373390 + 32683 27752 21739 22150 38479 38479 0.01512550050028949 LKFCKYKC 8 Unmodified _LKFCKYKC_ 0 0 0 REV__ENST00000484047.5_1_21:38460539-38463784:+|nuORF REV__ENST00000484047.5_1_21:38460539-38463784:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.772091 1031.52963 -0.41253 -0.00021318 2.7835 0.0014385 2.371 0.0012253 516.7730140840326 77.075 0.19337 76.595 76.457 76.651 -0.47945 0.0025962 0.0011047 NaN 2.5775 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 394550 + 32684 27752 21739 22150 0.01512550050028949 LKFCRERVTF 10 Unmodified _LKFCRERVTF_ 0 0 0 nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.8564453125 2 649.855532 1297.69651 NaN NaN NaN NaN NaN NaN NaN 90.24 1 89.738 89.238 90.238 -0.50171 0 0 0 0.97302 1 49329 49329 3.5965 0.31518 1 32685 7201 21740 22151 38480 38480 0.05957114199259195 LKFKKGVG 8 Unmodified _LKFKKGVG_ 0 0 0 REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7864990234375 2 438.786913 875.559273 0.81324 0.00035684 0.12386 5.4348E-05 0.9371 0.00041119 438.7866790233726 58.608 0.32978 58.547 58.432 58.762 -0.060719 40 16 3 0 0 0 0.37649 1 31918 31918 46.921 12.734 1 7324100 + 32686 25101 21741 22152 38481 38481 0.1165157338203926 LKFKKGVG 8 Unmodified _LKFKKGVG_ 0 0 0 REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7867126464844 2 438.786913 875.559273 1.3503 0.00059251 -0.89641 -0.00039333 0.45393 0.00019918 438.78651451600786 70.848 0.32283 70.883 70.698 71.021 0.035515 33 14 3 0 0 0 0.63229 1 38964 38964 23.148 2.2772 1 9905600 + 32687 25101 21741 22152 38482 38482 0.1165157338203926 LKFKKGVG 8 Unmodified _LKFKKGVG_ 0 0 0 REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.7881164550781 2 438.786913 875.559273 NaN NaN NaN NaN NaN NaN NaN 87.058 1 80.882 80.382 81.382 -6.1757 0 0 0 0.65904 1 57392 57392 30.225 5.5509 1 + 32688 25101 21741 22152 38483 38483 0.1165157338203926 LKFKKGVG 8 Unmodified _LKFKKGVG_ 0 0 0 REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF REV__ENST00000266085.6_1_22:33258067-33258136:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.7869262695312 2 438.786913 875.559273 NaN NaN NaN NaN NaN NaN NaN 92.294 1 86.118 85.618 86.618 -6.1757 0 0 0 0.80403 1 61033 61033 23.148 2.2772 1 + 32689 25101 21741 22152 38484 38484 0.1165157338203926 LKFVILHAED 10 Unmodified _LKFVILHAED_ 0 0 0 nc|ENSG00000243414|Q86XR7-2|TICAM2;ENSG00000243414|ENST00000427199|TICAM2 nc|ENSG00000243414|Q86XR7-2|TICAM2 nc|ENSG00000243414|Q86XR7-2|TICAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5611267089844 3 395.560646 1183.66011 0.22905 9.0603E-05 0.34924 0.00013814 0.57829 0.00022875 395.56091905678636 52.031 0.23258 51.973 51.854 52.087 -0.058918 18 10 2 0 0 0 0.69848 1 28174 28174 3.0723 0.44103 1 3686800 32690 16574 21742 22153 38485 38485 0.07562560574228883 LKFWRTRFLLL 11 Unmodified _LKFWRTRFLLL_ 0 0 0 nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.9848937988281 4 373.984233 1491.90782 1.6657 0.00062294 0.95012 0.00035533 2.6158 0.00097827 373.98432695516186 81.619 0.2141 75.443 75.267 75.481 -6.1757 14 11 2 0 0 0 0.73237 1 53590 53590 1.2148 0 1 8625900 32691 16082 21743 22154 38486 38486 0.18154734232712144 LKFYIRTKFYI 11 Unmodified _LKFYIRTKFYI_ 0 0 0 ENST00000313349.3_1_2:64861753-64861930:-|nuORF ENST00000313349.3_1_2:64861753-64861930:-|nuORF ENST00000313349.3_1_2:64861753-64861930:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 746.4393310546875 2 746.439755 1490.86496 NaN NaN NaN NaN NaN NaN NaN 27.797 1 27.826 27.326 28.326 0.029564 0 0 0 0.9435 1 14455 14455 0 0 1 32692 11712 21744 22155 38487 38487 0.1391591938458987 LKFYRKKWRQF 11 Unmodified _LKFYRKKWRQF_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-2|DGKH REV__nc|ENSG00000102780|Q86XP1-2|DGKH MSMS AL20221201_MKP_PDAC_01 4 800.4674682617188 2 800.46717 1598.91979 NaN NaN NaN NaN NaN NaN NaN 101.3 1 95.123 94.623 95.623 -6.1757 0 0 0 0.94301 1 67947 67947 0.35063 0.043601 1 + 32693 18254 21745 22156 38488 38488 0.14428350975845206 LKGANASA 8 Unmodified _LKGANASA_ 0 0 0 nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2054443359375 2 366.205953 730.397353 -0.098189 -3.5957E-05 -0.14639 -5.361E-05 -0.24458 -8.9567E-05 366.2058142680495 31.623 0.25717 31.623 31.482 31.739 0 22 12 2 0 0 0 0.75262 1 16455 16455 12.532 0 1 3976400 32694 1356 21746 22157 38489 38489 0.021369846290781425 LKGANASA 8 Unmodified _LKGANASA_ 0 0 0 nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2068481445312 2 366.205953 730.397353 1.8157 0.00066492 -1.7834 -0.0006531 0.032292 1.1826E-05 366.20518909763933 36.051 0.4065 31.858 31.63 32.037 -4.1928 41 24 2 0 0 0 0.79783 1 20960 20960 7.9102 0 1 11737000 32695 1356 21746 22157 38490 38490 0.021369846290781425 LKGFTKYAAQL 11 Unmodified _LKGFTKYAAQL_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.90673828125 3 413.908046 1238.70231 NaN NaN NaN NaN NaN NaN NaN 30.432 1 30.462 29.962 30.962 0.030106 0 0 0 0.94287 1 15911 15911 0.45452 0.046251 1 32696 2360 21747 22158 38491 38491 0.09250535982619112 LKGHRSVG 8 Unmodified _LKGHRSVG_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2542114257812 2 427.253769 852.492984 1.0293 0.00043979 -0.60595 -0.0002589 0.42339 0.00018089 427.2535720602246 18.953 0.2845 16.331 16.187 16.471 -2.6215 25 17 2 0 0 0 0.79982 1 9984 9984 6.7232 0 1 3320600 32697 4666 21748 22159 38492 38492 0.06083757540000079 LKGIRIPNRV 10 Unmodified _LKGIRIPNRV_ 0 0 0 nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000186715|Q2TV78|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2419128417969 3 389.25578 1164.74551 0.22005 8.5656E-05 -1.6963 -0.0006603 -1.4763 -0.00057464 389.25522449083746 39.586 0.1254 39.598 39.528 39.654 0.011452 8 5 2 0 0 0 0.24007 1 21095 21095 0.69767 0 1 635510 32698 16463 21749 22160 38493 38493 0.16972770550546556 LKGKNLPRII 10 Unmodified _LKGKNLPRII_ 0 0 0 ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3858032226562 2 576.384783 1150.75501 1.6179 0.00093253 -0.10546 -6.0785E-05 1.5124 0.00087175 576.3846230211699 105.85 0.44083 99.679 99.547 99.988 -6.1757 106 58 3 0 0 0 0.71123 1 70956 70956 1.6526 0.17072 1 7252600 32699 9049 21750 22161 38494 38494 0.18566538836080326 LKGPILVDKF 10 Unmodified _LKGPILVDKF_ 0 0 0 REV__ENSG00000023318|ENST00000262455|ERP44 REV__ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2383422851562 3 377.237504 1128.69068 0.29671 0.00011193 0.84035 0.00031701 1.1371 0.00042894 377.2377345054565 51.985 0.25498 51.926 51.772 52.027 -0.058918 27 11 4 0 0 0 0.63399 1 28145 28145 5.4027 0.35519 1 2236900 + 32700 17119 21751 22162 38495 38495 0.13148338959263128 LKGRLLLMRPK 11 Unmodified _LKGRLLLMRPK_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.9317626953125 2 662.934117 1323.85368 1.2086 0.00080121 -3.7113 -0.0024604 -2.5027 -0.0016592 662.9310676024802 104.25 0.089493 98.079 98.032 98.122 -6.1757 6 4 2 0 0 0 0.74046 1 69846 69846 1.3295 0.13619 1 13554000 32701 16175 21752 22163 38496 38496 0.20470818809462799 LKGRRLLRSL 10 Unmodified _LKGRRLLRSL_ 0 0 0 ENST00000286195.7_2_2:202483690-202483861:-|nuORF ENST00000286195.7_2_2:202483690-202483861:-|nuORF ENST00000286195.7_2_2:202483690-202483861:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 606.8002319335938 2 606.406581 1210.79861 NaN NaN NaN NaN NaN NaN NaN 93.14 1 86.964 86.464 87.464 -6.1757 0 0 0 0.96981 1 61633 61633 3.9444 0 1 32702 11443 21753 22164 38497 38497 0.201641483332196 LKGSEVYYF 9 Unmodified _LKGSEVYYF_ 0 0 0 REV__ENSG00000030066|ENST00000378460|NUP160 REV__ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2828369140625 2 553.281857 1104.54916 0.48572 0.00026874 -0.42726 -0.0002364 0.058457 3.2343E-05 553.2819856928401 54.025 0.15996 53.558 53.446 53.606 -0.46664 18 7 3 0 0 0 0.15471 1 29237 29237 27.629 0 1 5964700 + 32703 17142 21754 22165 38498 38498 0.0010692086611925333 LKHKKRWL 8 Unmodified _LKHKKRWL_ 0 0 0 REV__ENSG00000178404|ENST00000322630|CEP295NL REV__ENSG00000178404|ENST00000322630|CEP295NL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.9073486328125 3 370.241582 1107.70292 1.7166 0.00063556 -1.6019 -0.00059311 0.11465 4.2448E-05 370.24096666916 41.892 0.35061 37.284 37.186 37.536 -4.6079 29 21 2 0 0 0 8.7369 1 25275 25275 3.2813 0 1 7036700 + 32704 23043 21755 22166 38499 38499 0.15337420212972575 LKHLACLHHL 10 Unmodified _LKHLACLHHL_ 0 0 0 KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8401489257812 2 592.839685 1183.66482 NaN NaN NaN NaN NaN NaN NaN 29.768 1 29.768 29.268 30.268 0 0 0 0 0.57388 1 15433 15433 14.838 0 1 32705 15941 21756 22167 38500 38500 0.08033166235986755 LKHLLCNLKK 10 Unmodified _LKHLLCNLKK_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3778076171875 2 605.378643 1208.74273 NaN NaN NaN NaN NaN NaN NaN 102.19 1 102.14 101.64 102.64 -0.045853 0 0 0 1.0024 1 56764 56764 0.40072 0 1 32706 6898 21757 22168 38501 38501 0.14671179101355847 LKHSKMATL 9 Unmodified _LKHSKMATL_ 0 0 0 REV__ENST00000411872.1_1_7:65490182-65490254:-|nuORF REV__ENST00000411872.1_1_7:65490182-65490254:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 514.8008422851562 2 514.799694 1027.58484 NaN NaN NaN NaN NaN NaN NaN 77.527 1 71.352 70.852 71.852 -6.1757 0 0 0 0.56093 1 50710 50710 13.906 1.3745 1 + 32707 26718 21758 22169 38502 38502 0.07214679842149962 LKIKYVKYLYL 11 Unmodified _LKIKYVKYLYL_ 0 0 0 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 ENSG00000240720|ENST00000458448|LRRD1 MSMS AL20221201_MKP_PDAC_01 4 482.2675476074219 3 481.970646 1442.89011 NaN NaN NaN NaN NaN NaN NaN 17.347 1 14.76 14.26 15.26 -2.5866 0 0 0 0.94287 1 9062 9062 0.45452 0.35968 1 32708 10676 21759 22170 38503 38503 0.18637974187186046 LKKAKTTKKT 10 Unmodified _LKKAKTTKKT_ 0 0 0 ENST00000437414.1_1_17:58804528-58804777:-|nuORF ENST00000437414.1_1_17:58804528-58804777:-|nuORF ENST00000437414.1_1_17:58804528-58804777:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8335571289062 2 573.882073 1145.74959 -0.55537 -0.00031872 -0.24649 -0.00014145 -0.80185 -0.00046017 574.3833807704372 103.59 0.17497 103.55 103.47 103.64 -0.04792 9 6 2 0 0 0 0.72607 2 57516 57516;57551 0 0 1 2605800 32709 13350 21760 22171 38504;38505 38504 0.18254815253590095 LKKDVDCAY 9 Unmodified _LKKDVDCAY_ 0 0 0 ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000135443|ENST00000257901|KRT85;CON__P78386;nc|ENSG00000290966|A6NCN2|KRT87P ENSG00000170442|ENST00000423955|KRT86 ENSG00000170442|ENST00000423955|KRT86 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.766845703125 2 527.765517 1053.51648 0.7879 0.00041582 3.3649 0.0017759 4.1527 0.0021917 527.767414758455 57.957 0.29599 57.891 57.694 57.99 -0.066036 32 14 3 0 0 0 0.34999 1 31527 31527 14.838 0 1 4807900 + 32710 151 21761 22172 38506 38506 -0.008136095283816758 LKKGPGPIVP 10 Unmodified _LKKGPGPIVP_ 0 0 0 nc|ENSG00000043514|Q9H3H1-4|TRIT1 nc|ENSG00000043514|Q9H3H1-4|TRIT1 nc|ENSG00000043514|Q9H3H1-4|TRIT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.8011779785156 2 503.326402 1004.63825 1.2287 0.00061841 -0.24662 -0.00012413 0.98204 0.00049429 503.32650500446977 86.249 0.89613 80.073 79.709 80.605 -6.1757 81 48 2 0 0 0 0.23227 1 57171 57171 10.824 0 1 13497000 32711 16026 21762 22173 38507 38507 0.13611800616308756 LKKHAGKG 8 Unmodified _LKKHAGKG_ 0 0 0 nc|ENSG00000188517|Q9BXS0-3|COL25A1;nc|ENSG00000188517|Q9BXS0-2|COL25A1;ENSG00000188517|ENST00000399132|COL25A1 nc|ENSG00000188517|Q9BXS0-3|COL25A1 nc|ENSG00000188517|Q9BXS0-3|COL25A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7667846679688 2 419.766512 837.518471 0.28122 0.00011805 0.34947 0.0001467 0.63069 0.00026474 419.7668048174167 39.795 0.29486 39.8 39.709 40.004 0.0050583 24 13 2 0 0 0 0.80992 1 21312 21312 0.69038 0 1 1330600 32712 9664 21763 22174 38508 38508 0.0932123206241613 LKKIVTTY 8 Unmodified _LKKIVTTY_ 0 0 0 ENSG00000154822|ENST00000615277|PLCL2;nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2 ENSG00000154822|ENST00000615277|PLCL2 ENSG00000154822|ENST00000615277|PLCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.3038330078125 2 483.305136 964.595718 -0.48748 -0.0002356 -1.8864 -0.00091171 -2.3739 -0.0011473 483.30397306525816 103.39 0.12417 103.35 103.23 103.36 -0.047928 7 4 3 0 0 0 0.80992 1 57424 57424 0.69038 0 1 8725500 32713 6351 21764 22175 38509 38509 0.11200405488057186 LKKKAIQQKE 10 Unmodified _LKKKAIQQKE_ 0 0 0 REV__ENST00000419844.1_1_3:12369504-12369687:+|nuORF REV__ENST00000419844.1_1_3:12369504-12369687:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2587890625 3 405.259079 1212.75541 NaN NaN NaN NaN NaN NaN NaN 97.189 1 96.947 96.447 97.447 -0.24277 0 0 0 1.0047 1 53072 53072 0.15932 0 1 + 32714 26824 21765 22176 38510 38510 0.15753913765252037 LKKKIEFRR 9 Unmodified _LKKKIEFRR_ 0 0 0 REV__ENSG00000137815|ENST00000389629|RTF1 REV__ENSG00000137815|ENST00000389629|RTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3939208984375 2 609.395682 1216.77681 -0.46161 -0.00028131 -2.425 -0.0014778 -2.8867 -0.0017591 609.3938906216792 103.64 0.12533 103.59 103.49 103.62 -0.047928 7 4 2 0 0 0 0.61381 1 57560 57560 0.52476 0.52476 1 1311400 + 32715 20269 21766 22177 38511 38511 0.17709343584624548 LKKKIEFRR 9 Unmodified _LKKKIEFRR_ 0 0 0 REV__ENSG00000137815|ENST00000389629|RTF1 REV__ENSG00000137815|ENST00000389629|RTF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.395682 1216.77681 -0.46161 -0.00028131 -2.425 -0.0014778 -2.8867 -0.0017591 609.3938906216792 103.64 0.12533 103.59 103.49 103.62 -0.047928 0 0 NaN 0.52476 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1311400 + 32716 20269 21766 22177 0.17709343584624548 LKKKKHTL 8 Unmodified _LKKKKHTL_ 0 0 0 ENST00000467157.1_1_3:122864388-122880365:+|nuORF;ENSG00000065485|ENST00000316218|PDIA5 ENST00000467157.1_1_3:122864388-122880365:+|nuORF ENST00000467157.1_1_3:122864388-122880365:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 498.3401794433594 2 498.339844 994.665135 NaN NaN NaN NaN NaN NaN NaN 104.82 1 98.644 98.144 99.144 -6.1757 0 0 0 0.97444 1 70168 70168 0.69038 0 1 32717 905 21767 22178 38512 38512 0.16758909227496588 LKKKKKALLA 10 Unmodified _LKKKKKALLA_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MSMS AL20221201_MKP_PDAC_01 4 571.3795166015625 2 570.913176 1139.8118 NaN NaN NaN NaN NaN NaN NaN 106.23 1 100.05 99.551 100.55 -6.1757 0 0 0 1.0061 1 71116 71116 0 0 1 32718 10273 21768 22179 38513 38513 0.24748586392615834 LKKKKKALLA 10 Unmodified _LKKKKKALLA_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000491139.5_1_6:31924712-31926696:-|nuORF;ENST00000492185.5_1_6:31922795-31926696:-|nuORF;ENST00000488426.5_1_6:31922795-31926316:-|nuORF;ENST00000481121.5_1_6:31921790-31926696:-|nuORF nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MSMS AL20221201_MKP_PDAC_01 4 570.9152221679688 2 570.913176 1139.8118 NaN NaN NaN NaN NaN NaN NaN 106.23 1 100.06 99.559 100.56 -6.1757 0 0 0 1.0061 1 71121 71121 0 0 1 32719 10273 21768 22179 38514 38514 0.24748586392615834 LKKKKKKKKA 10 Unmodified _LKKKKKKKKA_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF;ENST00000514180.5_1_8:122652059-122653623:+|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.9697570800781 3 409.971092 1226.89145 NaN NaN NaN NaN NaN NaN NaN 16.245 1 16.245 15.745 16.745 0 0 0 0 1.0061 1 7903 7903 0 0 1 32720 14752 21769 22180 38515 38515 0.2870765306656722 LKKKVLKAP 9 Unmodified _LKKKVLKAP_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;nc|ENSG00000160145|O60229-2|KALRN;ENSG00000160145|ENST00000682506|KALRN nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1024.891479492188 1 1024.72411 1023.71684 0.48419 0.00049616 3.3322 0.0034146 3.8164 0.0039107 1024.7282883867479 46.683 0.094971 46.346 46.29 46.385 -0.33664 5 4 2 0 0 0 0.21889 1 25012 25012 0.6015 0 1 1860400 32721 16313 21770 22181 38516 38516 0.205926529214139 LKKLKKLK 8 Unmodified _LKKLKKLK_ 0 0 0 REV__ENSG00000136982|ENST00000313655|DSCC1 REV__ENSG00000136982|ENST00000313655|DSCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 998.5792846679688 1 998.744848 997.737572 1.3208 0.0013192 -2.9636 -0.0029599 -1.6427 -0.0016407 998.7469862861549 91.367 0.10007 91.403 91.326 91.426 0.036499 5 3 2 0 0 0 8.7369 1 50784 50784 0 0 1 3354000 + 32722 20205 21771 22182 38517 38517 0.23861243301064405 LKKMLTVRF 9 Unmodified _LKKMLTVRF_ 0 0 0 ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29 ENSG00000203661|ENST00000641363|OR2T5 ENSG00000203661|ENST00000641363|OR2T5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2388000488281 3 379.23885 1134.69472 0.73739 0.00027965 -1.3714 -0.00052009 -0.63402 -0.00024044 379.2382556133162 64.574 0.4752 64.563 64.254 64.729 -0.010536 51 23 3 0 0 0 0.58145 1 35386 35386 2.4985 2.4985 1 10370000 32723 9087 21772 22183 38518 38518 0.13276105181307685 LKKMLTVRF 9 Unmodified _LKKMLTVRF_ 0 0 0 ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29 ENSG00000203661|ENST00000641363|OR2T5 ENSG00000203661|ENST00000641363|OR2T5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.23885 1134.69472 0.37153 0.0001409 -1.4932 -0.00056628 -1.1217 -0.00042538 379.2383128609128 65.034 0.21207 64.55 64.403 64.616 -0.48428 -0.0063987 -0.00010874 NaN 2.4985 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 514340 32724 9087 21772 22183 0.13276105181307685 LKKMLTVRF 9 Unmodified _LKKMLTVRF_ 0 0 0 ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29 ENSG00000203661|ENST00000641363|OR2T5 ENSG00000203661|ENST00000641363|OR2T5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.23885 1134.69472 0.73739 0.00027965 -1.3714 -0.00052009 -0.63402 -0.00024044 379.2382556133162 64.574 0.4752 64.563 64.254 64.729 -0.010536 0.0063987 2.9823E-05 NaN 2.4985 51 23 3 NaN NaN NaN NaN 0 NaN NaN 0 10370000 32725 9087 21772 22183 0.13276105181307685 LKKMVLKKKA 10 Unmodified _LKKMVLKKKA_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1894226074219 3 396.273783 1185.79952 NaN NaN NaN NaN NaN NaN NaN 17.76 1 17.76 17.26 18.26 0 0 0 0 1.0061 1 8778 8778 0 0 1 32726 3477 21773 22184 38519 38519 0.21405226657907406 LKKQLQRVI 9 Unmodified _LKKQLQRVI_ 0 0 0 REV__ENSG00000180777|ENST00000690538|ANKRD30B REV__ENSG00000180777|ENST00000690538|ANKRD30B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.2174987792969 3 375.920397 1124.73936 0.69076 0.00025967 0.55732 0.00020951 1.2481 0.00046918 375.9206308124081 23.6 0.24908 20.773 20.595 20.844 -2.8273 23 13 2 0 0 0 0.21404 1 12761 12761 5.2969 0 1 3346000 + 32727 23168 21774 22185 38520 38520 0.18198252319029962 LKKRKFYLKKR 11 Unmodified _LKKRKFYLKKR_ 0 0 0 ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF ENST00000342992.10_3_2:179540701-179542581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 754.5008544921875 2 754.501013 1506.98747 NaN NaN NaN NaN NaN NaN NaN 108.86 1 108.81 108.31 109.31 -0.047607 0 0 0 0.9435 1 60277 60277 0 0 1 32728 11995 21775 22186 38521 38521 0.25425800906646145 LKKRKKRKKLK 11 Unmodified _LKKRKKRKKLK_ 0 0 0 ENSG00000230453|ENST00000684830|ANKRD18B;nc|ENSG00000230453|A2A2Z9|ANKRD18B ENSG00000230453|ENST00000684830|ANKRD18B ENSG00000230453|ENST00000684830|ANKRD18B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 727.527099609375 2 727.530104 1453.04566 NaN NaN NaN NaN NaN NaN NaN 94.48 1 94.494 93.994 94.994 0.014244 0 0 0 0.9435 1 52505 52505 0 0 1 32729 10615 21776 22187 38522 38522 0.33725482551949426 LKLFDRPQELK 11 Unmodified _LKLFDRPQELK_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;ENST00000494124.2_1_9:19316810-19337609:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.9420166015625 3 462.941638 1385.80309 0.79468 0.00036789 0.47019 0.00021767 1.2649 0.00058556 462.9417990866512 47.453 0.26013 47.415 47.258 47.518 -0.038643 37 11 4 0 0 0 0.036614 1 25524 25524 53.798 9.5914 1 10560000 32730 4903 21777 22188 38523 38523 0.12561567965462928 LKLFRRVA 8 Unmodified _LKLFRRVA_ 0 0 0 REV__nc|ENSG00000134245|Q93097-2|WNT2B REV__nc|ENSG00000134245|Q93097-2|WNT2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3345947265625 2 501.832186 1001.64982 1.6683 0.00083721 -0.56439 -0.00028323 1.1039 0.00055399 501.8314581674611 107.4 0.25336 101.22 101.15 101.4 -6.1757 60 42 2 0 0 0 0.80992 1 71861 71861 0.69038 0 1 3128100 + 32731 19965 21778 22189 38524 38524 0.14906042430311572 LKLFRRVA 8 Unmodified _LKLFRRVA_ 0 0 0 REV__nc|ENSG00000134245|Q93097-2|WNT2B REV__nc|ENSG00000134245|Q93097-2|WNT2B MSMS AL20221201_MKP_PDAC_01 4 502.1817626953125 2 501.832186 1001.64982 NaN NaN NaN NaN NaN NaN NaN 107.59 1 101.41 100.91 101.91 -6.1757 0 0 0 0.97444 1 71949 71949 0.69038 0 1 + 32732 19965 21778 22189 38525 38525 0.14906042430311572 LKLHKCLALL 10 Unmodified _LKLHKCLALL_ 0 0 0 REV__ENST00000464606.5_1_7:138764494-138764542:-|nuORF REV__ENST00000464606.5_1_7:138764494-138764542:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2246704101562 3 384.582617 1150.72602 -0.10783 -4.1471E-05 -1.1779 -0.00045301 -1.2858 -0.00049448 384.5821175543427 35.479 0.31705 35.503 35.285 35.602 0.024971 38 14 3 0 0 0 0.24008 1 18811 18811 0.62683 0.62683 1 10158000 + 32733 27379 21779 22190 38526 38526 0.15668678215411092 LKLIKMFLIEL 11 Unmodified _LKLIKMFLIEL_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MSMS AL20221201_MKP_PDAC_01 4 454.2931213378906 3 454.292732 1359.85637 NaN NaN NaN NaN NaN NaN NaN 93.157 1 86.981 86.481 87.481 -6.1757 0 0 0 0.9428 1 61645 61645 0.50596 0 1 + 32734 20613 21780 22191 38527 38527 0.1908322942376799 LKLIRCFLK 9 Unmodified _LKLIRCFLK_ 0 0 0 REV__ENST00000567000.2_1_16:46729456-46731494:+|nuORF REV__ENST00000567000.2_1_16:46729456-46731494:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.21337890625 3 378.579095 1132.71546 0.15611 5.9099E-05 -1.4706 -0.00055674 -1.3145 -0.00049764 378.57845156700324 39.314 0.33106 39.314 39.177 39.508 0 35 15 3 0 0 0 0.21885 1 20992 20992 0.20686 0 1 4826700 + 32735 28924 21781 22192 38528 38528 0.1544069556098293 LKLIRCFLK 9 Unmodified _LKLIRCFLK_ 0 0 0 REV__ENST00000567000.2_1_16:46729456-46731494:+|nuORF REV__ENST00000567000.2_1_16:46729456-46731494:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 378.579095 1132.71546 0.25391 9.6124E-05 -1.2308 -0.00046597 -0.97693 -0.00036985 378.5787140569329 39.315 0.23008 39.326 39.217 39.447 0.011456 0.005997 0.00019109 NaN 0.20686 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1990200 + 32736 28924 21781 22192 0.1544069556098293 LKLLVWLLRFK 11 Unmodified _LKLLVWLLRFK_ 0 0 0 REV__ENST00000264501.8_2_4:123270613-123270754:+|nuORF REV__ENST00000264501.8_2_4:123270613-123270754:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.9757080078125 2 714.976308 1427.93806 NaN NaN NaN NaN NaN NaN NaN 14.172 1 14.18 13.68 14.68 0.0073986 0 0 0 0.9435 1 7016 7016 0 0 1 + 32737 25075 21782 22193 38529 38529 0.2412109289784894 LKLSKLVPG 9 Unmodified _LKLSKLVPG_ 0 0 0 ENST00000485551.5_1_1:35906621-35936502:-|nuORF;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L ENST00000485551.5_1_1:35906621-35936502:-|nuORF ENST00000485551.5_1_1:35906621-35936502:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 477.8222045898438 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 106.13 1 99.953 99.453 100.45 -6.1757 0 0 0 0.85737 1 71058 71058 0.6015 0 1 32738 5442 21783 22194 38530 38530 0.14868398242049352 LKLTEGVKL 9 Unmodified _LKLTEGVKL_ 0 0 0 REV__CON__P01030 REV__CON__P01030 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.7952575683594 2 500.823692 999.632832 1.2395 0.00062077 -0.80021 -0.00040076 0.43929 0.00022001 500.8232075495515 87.646 0.5476 81.471 81.163 81.71 -6.1757 45 29 2 0 0 0 0.14225 1 57892 57892 24.021 5.8856 1 9601300 + + 32739 16835 21784 22195 38531 38531 0.13300077033841262 LKLVPSLD 8 Unmodified _LKLVPSLD_ 0 0 0 REV__ENSG00000171496|ENST00000641027|OR1L8 REV__ENSG00000171496|ENST00000641027|OR1L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 884.54345703125 1 884.545145 883.537869 0.28761 0.0002544 -0.55209 -0.00048834 -0.26448 -0.00023394 884.5451467334502 57.95 0.21843 57.95 57.817 58.036 0 13 8 2 0 0 0 0.78849 1 32236 32236 9.3474 0 1 960560 + 32740 22568 21785 22196 38532 38532 0.09144143562662066 LKLWDATSAN 10 Unmodified _LKLWDATSAN_ 0 0 0 nc|ENSG00000120868|O14727-5|APAF1;nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1 nc|ENSG00000120868|O14727-5|APAF1 nc|ENSG00000120868|O14727-5|APAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.2093811035156 3 373.532868 1117.57677 -0.10649 -3.9777E-05 -0.24376 -9.1053E-05 -0.35025 -0.00013083 373.5328646554691 31.607 0.42235 31.607 31.398 31.82 0 54 20 4 0 0 0 0.23926 1 16384 16384 1.5923 0.63001 1 24126000 32741 3547 21786 22197 38533 38533 0.022688241263495 LKMKEKKP 8 Unmodified _LKMKEKKP_ 0 0 0 REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.3143310546875 2 501.312438 1000.61032 NaN NaN NaN NaN NaN NaN NaN 16.539 1 16.539 16.039 17.039 0 0 0 0 0.97444 1 8074 8074 2.5775 0 1 + 32742 21527 21787 22198 38534 38534 0.11004154364582064 LKMKEKKP 8 Unmodified _LKMKEKKP_ 0 0 0 REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3151550292969 2 501.312438 1000.61032 NaN NaN NaN NaN NaN NaN NaN 16.198 1 16.203 15.703 16.703 0.0050564 0 0 0 0.97444 1 8111 8111 0.69038 0 1 + 32743 21527 21787 22198 38535 38535 0.11004154364582064 LKMKEKKP 8 Unmodified _LKMKEKKP_ 0 0 0 REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3150329589844 2 501.312438 1000.61032 NaN NaN NaN NaN NaN NaN NaN 17.466 1 17.471 16.971 17.971 0.0050564 0 0 0 0.97444 1 8810 8810 0.69038 0 1 + 32744 21527 21787 22198 38536 38536 0.11004154364582064 LKMKEKKP 8 Unmodified _LKMKEKKP_ 0 0 0 REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3141479492188 2 501.312438 1000.61032 NaN NaN NaN NaN NaN NaN NaN 17.652 1 17.658 17.158 18.158 0.0050564 0 0 0 0.97444 1 8914 8914 0.69038 0 1 + 32745 21527 21787 22198 38537 38537 0.11004154364582064 LKMLMKKC 8 Unmodified _LKMLMKKC_ 0 0 0 REV__nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L REV__nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7841186523438 2 497.784144 993.553735 NaN NaN NaN NaN NaN NaN NaN 5.6749 1 5.6749 5.1749 6.1749 0 0 0 0 0.97444 1 2727 2727 0 0 1 + 32746 29723 21788 22199 38538 38538 0.05670067212042795 LKMRGFKRR 9 Unmodified _LKMRGFKRR_ 0 0 0 REV__nc|ENSG00000167670|Q13111-2|CHAF1A REV__nc|ENSG00000167670|Q13111-2|CHAF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8707885742188 2 596.366401 1190.71825 2.7428 0.0016357 0.10858 6.4751E-05 2.8513 0.0017004 596.3666726214843 97.16 0.94931 97.153 96.853 97.802 -0.007019 74 35 3 0 0 0 0.61381 1 54046 54046 0.52476 0 1 12764000 + 32747 22238 21789 22200 38539 38539 0.13051963738507766 LKMRHQLSFL 10 Unmodified _LKMRHQLSFL_ 0 0 0 ENST00000482791.1_1_1:151638429-151641724:+|nuORF ENST00000482791.1_1_1:151638429-151641724:+|nuORF ENST00000482791.1_1_1:151638429-151641724:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.9121704101562 3 424.913025 1271.71725 0.74397 0.00031612 -1.66 -0.00070536 -0.91603 -0.00038923 424.9123453904793 36.569 0.66575 32.286 31.905 32.571 -4.2835 114 40 4 0 0 0 0.52659 1 21288 21288 14.957 0.73899 1 112960000 32748 14113 21790 22201 38540 38540 0.09225704578943805 LKMRNLHF 8 Unmodified _LKMRNLHF_ 0 0 0 ENST00000324545.8_2_X:40988262-40988391:+|nuORF ENST00000324545.8_2_X:40988262-40988391:+|nuORF ENST00000324545.8_2_X:40988262-40988391:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2321166992188 2 529.800029 1057.5855 NaN NaN NaN NaN NaN NaN NaN 71.78 1 71.78 71.28 72.28 0 0 0 0 0.97444 1 39978 39978 2.5775 0.27475 1 32749 11800 21791 22202 38541 38541 0.05901519281860601 LKNKHRVQRME 11 Unmodified _LKNKHRVQRME_ 0 0 0 ENST00000514616.5_1_5:137194760-137194853:-|nuORF ENST00000514616.5_1_5:137194760-137194853:-|nuORF ENST00000514616.5_1_5:137194760-137194853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.27587890625 3 480.273505 1437.79869 0.90066 0.00043256 2.0533 0.00098613 2.9539 0.0014187 480.27482077161244 49.571 0.19347 49.522 49.471 49.665 -0.048824 23 9 3 0 0 0 0.71938 1 26794 26794 2.4348 0 1 2826900 32750 14655 21792 22203 38542 38542 0.09729780270890842 LKNLTKLIM 9 Unmodified _LKNLTKLIM_ 0 0 0 nc|ENSG00000091106|Q9NPP4-2|NLRC4;ENSG00000091106|ENST00000402280|NLRC4 nc|ENSG00000091106|Q9NPP4-2|NLRC4 nc|ENSG00000091106|Q9NPP4-2|NLRC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 358.2438659667969 3 358.563222 1072.66784 1.5816 0.00056709 0.21451 7.6916E-05 1.7961 0.000644 358.5633490774732 84.021 0.50114 77.846 77.567 78.068 -6.1757 50 26 2 0 0 0 0.20727 1 55335 55335 2.4985 0 1 15122000 32751 1578 21793 22204 38543 38543 0.13440996570125208 LKNRHKLSLKA 11 Unmodified _LKNRHKLSLKA_ 0 0 0 ENST00000374864.8_3_20:33077078-33077186:+|nuORF ENST00000374864.8_3_20:33077078-33077186:+|nuORF ENST00000374864.8_3_20:33077078-33077186:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.6146240234375 3 436.613856 1306.81974 1.6958 0.00074042 0.68848 0.0003006 2.3843 0.001041 436.61406128326587 104.27 0.099281 98.097 98.032 98.132 -6.1757 9 5 2 0 0 0 0.7326 1 69843 69843 0.40827 0 1 7144200 32752 12460 21794 22205 38544 38544 0.17860113642086617 LKNVNPGKRG 10 Unmodified _LKNVNPGKRG_ 0 0 0 ENSG00000145794|ENST00000503335|MEGF10;ENST00000515622.1_1_5:126783361-126801299:+|nuORF ENSG00000145794|ENST00000503335|MEGF10 ENSG00000145794|ENST00000503335|MEGF10 MSMS AL20221201_MKP_PDAC_01 4 361.5542907714844 3 361.552485 1081.63563 NaN NaN NaN NaN NaN NaN NaN 48.976 1 43.58 43.08 44.08 -5.3961 0 0 0 0.87645 1 30548 30548 8.9762 0.82072 1 32753 5726 21795 22206 38545 38545 0.09807345211356733 LKPFLIKRLEL 11 Unmodified _LKPFLIKRLEL_ 0 0 0 REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000173208|ENST00000308666|ABCD2 MSMS AL20221201_MKP_PDAC_01 4 685.4539794921875 2 685.450123 1368.88569 NaN NaN NaN NaN NaN NaN NaN 103.47 1 97.29 96.79 97.79 -6.1757 0 0 0 0.94307 1 69368 69368 0.30703 0 1 + 32754 22710 21796 22207 38546 38546 0.216005097642892 LKPISDSGIN 10 Unmodified _LKPISDSGIN_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.32861328125 2 522.290214 1042.56587 0.18097 9.4519E-05 -0.46922 -0.00024507 -0.28825 -0.00015055 522.7905288552179 69.863 0.42163 69.894 69.629 70.05 0.030914 50 21 4 0 0 0 0.23745 1 38515 38515 5.7319 0.43497 1 7643900 32755 1983 21797 22208 38547 38547 0.046294217521108294 LKPISRELRRE 11 Unmodified _LKPISRELRRE_ 0 0 0 nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000478282.1_1_21:44514579-44514991:-|nuORF nc|ENSG00000160201|Q01081-4|U2AF1 nc|ENSG00000160201|Q01081-4|U2AF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2838134765625 3 466.284287 1395.83103 0.15622 7.2844E-05 0.067856 3.164E-05 0.22408 0.00010448 466.28461135897413 22.888 0.26678 20.11 20.002 20.269 -2.7784 25 16 2 0 0 0 0.65096 1 12319 12319 8.7518 1.2747 1 4489300 32756 6697 21798 22209 38548 38548 0.14894890945538464 LKPITKMTIS 10 Unmodified _LKPITKMTIS_ 0 0 0 nc|ENSG00000292343|Q02040-2|AKAP17A;nc|ENSG00000292343|Q02040-3|AKAP17A;ENSG00000197976|ENST00000313871|AKAP17A nc|ENSG00000292343|Q02040-2|AKAP17A nc|ENSG00000292343|Q02040-2|AKAP17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8988342285156 3 377.898382 1130.67332 -0.085868 -3.2449E-05 0.56549 0.0002137 0.47962 0.00018125 377.89850430314567 35.621 0.78722 35.646 35.162 35.949 0.024971 77 37 3 0 0 0 0.69377 1 18812 18812 1.7423 1.7423 1 7649400 32757 10032 21799 22210 38549 38549 0.11320675361980648 LKPNPCIACL 10 Unmodified _LKPNPCIACL_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.253173828125 2 536.288105 1070.56166 -0.11123 -5.9651E-05 0.60617 0.00032508 0.49494 0.00026543 536.2884064590866 51.959 0.21647 51.959 51.886 52.103 0 15 9 2 0 0 0 0.22811 1 28791 28791 10.074 0 1 4657900 + 32758 21791 21800 22211 38550 38550 0.029199177331520332 LKPSSSILPM 10 Unmodified _LKPSSSILPM_ 0 0 0 REV__ENSG00000070367|ENST00000621441|EXOC5 REV__ENSG00000070367|ENST00000621441|EXOC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2061767578125 3 358.207216 1071.59982 0.60085 0.00021523 -3.2119 -0.0011505 -2.6111 -0.0009353 358.20586736486405 36.517 0.37882 36.517 36.311 36.69 0 27 18 3 0 0 0 0.67459 1 19372 19372 3.0723 0.22898 1 6498200 + 32759 17469 21801 22212 38551 38551 0.0668812691947096 LKPSSSILPM 10 Unmodified _LKPSSSILPM_ 0 0 0 REV__ENSG00000070367|ENST00000621441|EXOC5 REV__ENSG00000070367|ENST00000621441|EXOC5 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 358.207216 1071.59982 0.86049 0.00030823 -4.1954 -0.0015028 -3.3349 -0.0011946 358.20549348837676 41.401 0.51517 36.793 36.612 37.127 -4.6079 0.1383 -0.00037829 NaN 3.0723 44 33 2 NaN NaN NaN NaN 0 NaN NaN 0 21940000 + 32760 17469 21801 22212 0.0668812691947096 LKQEANTEP 9 Unmodified _LKQEANTEP_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;ENST00000587864.1_1_17:74057571-74060203:-|nuORF nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7554931640625 2 515.264196 1028.51384 0.28243 0.00014553 2.196 0.0011315 2.4784 0.001277 515.2660697203115 55.261 0.31772 54.783 54.588 54.905 -0.47798 25 14 3 0 0 0 0.20139 1 29866 29866 10.824 2.9138 1 1842400 32761 7679 21802 22213 38552 38552 0.0007225833833217621 LKQPPYGM 8 Unmodified _LKQPPYGM_ 0 0 0 ENST00000484066.2_1_2:63280047-63280308:+|nuORF;ENSG00000115507|ENST00000282549|OTX1 ENST00000484066.2_1_2:63280047-63280308:+|nuORF ENST00000484066.2_1_2:63280047-63280308:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.25 2 467.246763 932.478974 0.48214 0.00022528 2.3194 0.0010837 2.8016 0.001309 467.2494143824322 97.295 0.7702 97.295 96.913 97.683 0 181 36 6 0 0 0 0.80975 1 53911 53911 0.79363 0.10326 1 38492000 32762 3130 21803 22214 38553 38553 0.010033439966832702 LKQQKKKASLT 11 Unmodified _LKQQKKKASLT_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.902587890625 2 636.903537 1271.79252 NaN NaN NaN NaN NaN NaN NaN 85.082 1 84.58 84.08 85.08 -0.5015 0 0 0 0.94307 1 46554 46554 0.30703 0 1 32763 5528 21804 22215 38554 38554 0.1674958531102675 LKRGRLVL 8 Unmodified _LKRGRLVL_ 0 0 0 ENST00000460879.5_1_1:145588608-145589406:-|nuORF;ENST00000477878.5_1_1:145588480-145589427:-|nuORF;ENSG00000186364|ENST00000334513|NUDT17 ENST00000460879.5_1_1:145588608-145589406:-|nuORF ENST00000460879.5_1_1:145588608-145589406:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 955.6586303710938 1 954.657096 953.649819 1.4062 0.0013425 -0.43977 -0.00041983 0.96646 0.00092264 954.6563764704047 104.08 0.090271 97.905 97.856 97.947 -6.1757 35 26 2 0 0 0 0.81107 1 69706 69706 0 0 1 3405500 32764 9473 21805 22216 38555 38555 0.17114042430296195 LKRHYKLL 8 Unmodified _LKRHYKLL_ 0 0 0 ENST00000332707.9_1_12:64815105-64815165:+|nuORF ENST00000332707.9_1_12:64815105-64815165:+|nuORF ENST00000332707.9_1_12:64815105-64815165:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.1871032714844 3 357.565954 1069.67603 1.5645 0.00055941 -0.12692 -4.5381E-05 1.4376 0.00051403 357.56588875676215 39.324 0.41815 34.873 34.689 35.107 -4.4509 44 25 2 0 0 0 8.7369 1 23269 23269 11.64 0 1 23542000 32765 11874 21806 22217 38556 38556 0.1439831160180347 LKRKHRLIQRL 11 Unmodified _LKRKHRLIQRL_ 0 0 0 REV__ENST00000537025.6_1_17:66040173-66040476:+|nuORF REV__ENST00000537025.6_1_17:66040173-66040476:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 730.9882202148438 2 730.986061 1459.95757 NaN NaN NaN NaN NaN NaN NaN 94.358 1 94.358 93.858 94.858 0 0 0 0 0.9435 1 52158 52158 0 0 1 + 32766 28545 21807 22218 38557 38557 0.24598861961362672 LKRKVREVG 9 Unmodified _LKRKVREVG_ 0 0 0 REV__ENST00000502782.5_1_5:34845647-34845701:+|nuORF REV__ENST00000502782.5_1_5:34845647-34845701:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2376403808594 3 362.236497 1083.68766 0.83013 0.0003007 0.38099 0.00013801 1.2111 0.00043871 362.2367366013704 11.903 0.044901 9.421 9.394 9.4389 -2.482 14 7 2 0 0 0 0.331 1 5991 5991 15.739 1.3332 1 3420700 + 32767 28030 21808 22219 38558 38558 0.14916508625105962 LKRLDEQRI 9 Unmodified _LKRLDEQRI_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.9031066894531 3 390.903295 1169.68806 -0.49973 -0.00019535 0.23842 9.3199E-05 -0.26131 -0.00010215 390.9034100069712 19.749 0.14584 19.749 19.686 19.831 0 32 18 2 0 0 0 0.50598 1 9895 9895 7.1017 1.3699 1 1344000 + 32768 29733 21809 22220 38559 38559 0.1099988355433652 LKRLDEQRI 9 Unmodified _LKRLDEQRI_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 390.903295 1169.68806 -0.49973 -0.00019535 0.23842 9.3199E-05 -0.26131 -0.00010215 390.9034100069712 19.749 0.14584 19.749 19.686 19.831 0 0.02006 6.4994E-05 NaN 7.1017 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1344000 + 32769 29733 21809 22220 0.1099988355433652 LKRLKTGRSH 10 Unmodified _LKRLKTGRSH_ 0 0 0 REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.250244140625 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 76.874 1 76.874 76.374 77.374 0 0 0 0 1.005 1 42734 42734 0.12286 0.028024 1 + 32770 20634 21810 22221 38560 38560 0.14134698402426693 LKRMWHQAL 9 Unmodified _LKRMWHQAL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000480961.1_1_20:44522693-44523773:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8916931152344 3 394.890332 1181.64917 NaN NaN NaN NaN NaN NaN NaN 18.381 1 18.404 17.904 18.904 0.023106 0 0 0 0.84369 1 9213 9213 1.1933 0.41681 1 32771 878 21811 22222 38561 38561 0.06560879718949764 LKRPAFRLL 9 Unmodified _LKRPAFRLL_ 0 0 0 ENST00000564542.5_2_16:22433513-22442873:-|nuORF ENST00000564542.5_2_16:22433513-22442873:-|nuORF ENST00000564542.5_2_16:22433513-22442873:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.9138793945312 3 371.913354 1112.71823 1.8483 0.00068741 -0.2245 -8.3494E-05 1.6238 0.00060391 371.91328477480187 96.77 0.49096 90.594 90.37 90.861 -6.1757 46 28 2 0 0 0 0.42049 1 64096 64096 11.495 0 1 13034000 32772 15387 21812 22223 38562 38562 0.16638287010164277 LKRSKRRRGKL 11 Unmodified _LKRSKRRRGKL_ 0 0 0 REV__ENST00000275036.11_1_6:79911404-79912078:-|nuORF REV__ENST00000275036.11_1_6:79911404-79912078:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.4689331054688 2 699.468035 1396.92152 -0.4766 -0.00033337 1.2107 0.00084682 0.73406 0.00051345 699.4689772093714 103.82 0.15134 103.77 103.69 103.84 -0.048737 8 6 2 0 0 0 0.74203 1 57648 57648 0.30703 0 1 2198400 + 32773 25168 21813 22224 38563 38563 0.23893404784485028 LKRSKRRRGKL 11 Unmodified _LKRSKRRRGKL_ 0 0 0 REV__ENST00000275036.11_1_6:79911404-79912078:-|nuORF REV__ENST00000275036.11_1_6:79911404-79912078:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 699.468035 1396.92152 -0.4766 -0.00033337 1.2107 0.00084682 0.73406 0.00051345 699.4689772093714 103.82 0.15134 103.77 103.69 103.84 -0.048737 0 0 NaN 0.30703 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2198400 + 32774 25168 21813 22224 0.23893404784485028 LKRSRRNLREK 11 Unmodified _LKRSRRNLREK_ 0 0 0 REV__nc|ENSG00000204614|Q6P9F5-2|TRIM40 REV__nc|ENSG00000204614|Q6P9F5-2|TRIM40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.9719543457031 3 485.970814 1454.89061 1.5972 0.00077622 2.9075 0.0014129 4.5047 0.0021892 485.9717928371991 104.55 0.11754 98.376 98.299 98.417 -6.1757 13 7 3 0 0 0 0.74452 1 70013 70013 0.073264 0 1 12297000 + 32775 24190 21814 22225 38564 38564 0.18136206679582756 LKRTQEEKL 9 Unmodified _LKRTQEEKL_ 0 0 0 REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1 REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2290344238281 3 382.227667 1143.66117 0.66213 0.00025308 0.53904 0.00020604 1.2012 0.00045912 382.2278288619393 16.699 0.24805 14.142 14.018 14.266 -2.557 94 38 3 0 0 0 0.27545 1 8630 8630 18.373 3.5352 1 11345000 + 32776 21550 21815 22226 38565 38565 0.09508774943128628 LKRYTAIEI 9 Unmodified _LKRYTAIEI_ 0 0 0 REV__nc|ENSG00000131095|P14136-3|GFAP REV__nc|ENSG00000131095|P14136-3|GFAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8322143554688 2 553.832049 1105.64954 0.46964 0.0002601 0.80081 0.00044351 1.2704 0.00070361 553.8324930111849 76.862 2.7535 70.686 68.416 71.17 -6.1757 250 150 3 0 0 0 0.047788 1 50031 50031 45.7 3.86 1 66182000 + 32777 19771 21816 22227 38566 38566 0.10094577919790026 LKRYTAIEI 9 Unmodified _LKRYTAIEI_ 0 0 0 REV__nc|ENSG00000131095|P14136-3|GFAP REV__nc|ENSG00000131095|P14136-3|GFAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.557861328125 3 369.557125 1105.64954 0.9033 0.00033382 -0.13033 -4.8165E-05 0.77297 0.00028566 369.5571465314513 76.786 0.89899 70.61 70.201 71.1 -6.1757 89 49 2 0 0 0 0.07916 3 50315 50181;50315;50434 34.932 11.142 1 17598000 + 32778 19771 21816 22227 38567;38568;38569 38568 0.10094577919790026 LKSNPKLCSL 10 Unmodified _LKSNPKLCSL_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MSMS AL20221201_MKP_PDAC_01 4 368.2142944335938 3 368.214482 1101.62162 NaN NaN NaN NaN NaN NaN NaN 16.121 1 13.564 13.064 14.064 -2.557 0 0 0 0.80293 1 8330 8330 12.175 0.65687 1 + 32779 22981 21817 22228 38570 38570 0.07486931668040597 LKSSLLSA 8 Unmodified _LKSSLLSA_ 0 0 0 REV__chr1:27669426-27672123|36|15.03|0.81|4.22|-|0|IFI6,IFI6|1 REV__chr1:27669426-27672123|36|15.03|0.81|4.22|-|0|IFI6,IFI6|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.7538757324219 2 409.752736 817.490919 1.37 0.00056137 1.0232 0.00041926 2.3932 0.00098062 409.7530327886891 37.514 0.4929 33.231 32.974 33.467 -4.2835 67 29 3 0 0 0 0.71527 1 21909 21909 15.847 0 1 29048000 + 32780 16770 21818 22229 38571 38571 0.07487284011517659 LKSVGIRNFF 10 Unmodified _LKSVGIRNFF_ 0 0 0 REV__nc|ENSG00000078900|O15350-10|TP73 REV__nc|ENSG00000078900|O15350-10|TP73 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2336120605469 3 394.232752 1179.67643 NaN NaN NaN NaN NaN NaN NaN 52.353 1 52.294 51.794 52.794 -0.058918 0 0 0 0.97302 1 28359 28359 1.7423 0.52744 1 + 32781 29511 21819 22230 38572 38572 0.09377686530956453 LKSYQEPIF 9 Unmodified _LKSYQEPIF_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|62|3|anti-sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|62|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8026733398438 2 562.802957 1123.59136 0.27652 0.00015563 -0.40073 -0.00022553 -0.12421 -6.9904E-05 562.8026027783937 54.768 0.3397 54.301 54.162 54.502 -0.46664 34 16 3 0 0 0 0.15471 1 29700 29700 27.629 0.40557 1 6743600 + 32782 29414 21820 22231 38573 38573 0.034508962744894234 LKTKSLRRRRK 11 Unmodified _LKTKSLRRRRK_ 0 0 0 REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF REV__ENST00000421536.5_1_2:187351098-187359978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 721.480224609375 2 721.481143 1440.94773 -0.46164 -0.00033307 -0.0064622 -4.6624E-06 -0.46811 -0.00033773 721.4811672400127 103.8 0.087997 103.75 103.69 103.78 -0.048737 5 3 2 0 0 0 0.7453 1 57647 57647 0 0 1 2112700 + 32783 26845 21821 22232 38574 38574 0.24489673955940816 LKTQNREI 8 Unmodified _LKTQNREI_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2907104492188 2 501.290548 1000.56654 0.16492 8.2673E-05 0.18921 9.4849E-05 0.35413 0.00017752 501.2905938188285 89.135 0.60667 88.631 88.371 88.978 -0.50423 72 26 4 0 0 0 0.80232 1 48764 48764 5.2307 0 1 6092800 + 32784 19587 21822 22233 38575 38575 0.06628261191792717 LKTVDPAKF 9 Unmodified _LKTVDPAKF_ 0 0 0 ENSG00000132297|ENST00000414222|HHLA1 ENSG00000132297|ENST00000414222|HHLA1 ENSG00000132297|ENST00000414222|HHLA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7715454101562 2 509.800217 1017.58588 0.48451 0.000247 -4.2939 -0.002189 -3.8094 -0.001942 509.798633952754 66.975 0.096069 60.8 60.73 60.826 -6.1757 6 4 2 0 0 0 0.20139 1 43606 43606 10.824 8.5212 1 8349800 32785 4385 21823 22234 38576 38576 0.07779217482709555 LKTWFVID 8 Unmodified _LKTWFVID_ 0 0 0 nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5;ENSG00000140015|ENST00000322893|KCNH5;ENST00000394964.3_1_14:63416779-63568536:-|nuORF nc|ENSG00000143473|O95259-2|KCNH1;ENST00000394964.3_1_14:63416779-63568536:-|nuORF nc|ENSG00000143473|O95259-2|KCNH1 MSMS AL20221201_MKP_PDAC_01 4 511.2928466796875 2 511.289485 1020.56442 NaN NaN NaN NaN NaN NaN NaN 102.57 1 96.397 95.897 96.897 -6.1757 0 0 0 0.97444 1 68827 68827 5.2307 0.90143 1 32786 5516;12752 21824 22235 38577 38577 0.054958324539938985 LKVKGNVF 8 Unmodified _LKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7850646972656 2 452.78437 903.554188 NaN NaN NaN NaN NaN NaN NaN 50.884 1 50.83 50.33 51.33 -0.053871 0 0 0 0.14987 1 27528 27528 89.427 22.391 1 32787 2556 21825 22236 38578 38578 0.09855269519425747 LKVLENWWSVL 11 Unmodified _LKVLENWWSVL_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000460168.1_1_10:69726418-69749980:-|nuORF;ENST00000427635.6_1_10:69747892-69752485:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.8920288085938 2 693.892638 1385.77072 -0.2822 -0.00019582 -1.2063 -0.00083707 -1.4885 -0.0010329 694.3930576769263 65.65 0.22998 59.474 59.398 59.628 -6.1757 17 13 2 0 0 0 0.59689 1 42649 42649 11.495 3.3392 1 17900000 32788 5949 21826 22237 38579 38579 0.09326780562446402 LKVLIEFTYI 10 Unmodified _LKVLIEFTYI_ 0 0 0 REV__ENSG00000136546|ENST00000643258|SCN7A REV__ENSG00000136546|ENST00000643258|SCN7A MSMS AL20221201_MKP_PDAC_01 4 413.5843200683594 3 413.58468 1237.73221 NaN NaN NaN NaN NaN NaN NaN 15.825 1 13.298 12.798 13.798 -2.5273 0 0 0 0.97044 1 8154 8154 3.8763 1.033 1 + 32789 20169 21827 22238 38580 38580 0.12285474927966789 LKVPGRAW 8 Unmodified _LKVPGRAW_ 0 0 0 ENST00000463920.5_1_1:154574641-154574882:-|nuORF;ENST00000368474.8_1_1:154574641-154574746:-|nuORF ENST00000463920.5_1_1:154574641-154574882:-|nuORF ENST00000463920.5_1_1:154574641-154574882:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2456970214844 2 463.782162 925.549771 0.14835 6.8801E-05 1.1559 0.0005361 1.3043 0.00060491 463.7826841429181 34.613 0.17216 34.64 34.561 34.733 0.027401 14 7 2 0 0 0 8.7369 1 18282 18282 5.7604 4.9668 1 8289700 32790 12270 21828 22239 38581 38581 0.08401805096502812 LKWDRKKKRFV 11 Unmodified _LKWDRKKKRFV_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3152770996094 3 501.980539 1502.91979 0.30534 0.00015327 -0.14734 -7.3961E-05 0.158 7.9313E-05 501.98033841005747 74.01 0.36895 74.054 73.864 74.233 0.043983 50 16 4 0 0 0 0.74203 1 40756 40756 0.08335 0 1 18836000 32791 3676 21829 22240 38582 38582 0.18844350975859925 LKWKRPRRAI 10 Unmodified _LKWKRPRRAI_ 0 0 0 ENST00000489852.1_1_7:96747035-96772137:+|nuORF ENST00000489852.1_1_7:96747035-96772137:+|nuORF ENST00000489852.1_1_7:96747035-96772137:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.4320068359375 2 662.427848 1322.84114 3.8779 0.0025688 2.8072 0.0018596 6.6851 0.0044284 662.4296025813595 98.128 0.2205 98.11 97.985 98.206 -0.018188 16 7 3 0 0 0 0.69377 1 54531 54531 3.5965 0.31518 1 1161900 32792 14248 21830 22241 38583 38583 0.19263543461443078 LKWLPPWLI 9 Unmodified _LKWLPPWLI_ 0 0 0 ENST00000495037.1_1_3:66430689-66454678:-|nuORF;ENST00000496559.6_1_3:66430689-66456253:-|nuORF;nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1 ENST00000495037.1_1_3:66430689-66454678:-|nuORF ENST00000495037.1_1_3:66430689-66454678:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2424011230469 3 389.242589 1164.70594 0.20729 8.0685E-05 -1.5001 -0.00058391 -1.2928 -0.00050323 389.242010436282 61.148 0.91361 61.104 60.726 61.64 -0.04351 102 45 3 0 0 0 0.58865 1 33405 33405 1.0715 0.29493 1 8856200 32793 5643 21831 22242 38584 38584 0.1301725054711369 LKWQSLERRI 10 Unmodified _LKWQSLERRI_ 0 0 0 nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B nc|ENSG00000116852|O75037-3|KIF21B nc|ENSG00000116852|O75037-3|KIF21B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.5980834960938 3 443.598094 1327.77245 0.39342 0.00017452 -0.059476 -2.6383E-05 0.33394 0.00014814 443.59802207919773 18.344 0.083574 18.35 18.284 18.368 0.0060463 5 4 2 0 0 0 0.69848 1 9302 9302 3.0723 0 1 822820 32794 3261 21832 22243 38585 38585 0.12167834371075514 LKWVAAPKH 9 Unmodified _LKWVAAPKH_ 0 0 0 ENST00000446897.1_1_10:32392029-32392209:-|nuORF ENST00000446897.1_1_10:32392029-32392209:-|nuORF ENST00000446897.1_1_10:32392029-32392209:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.2146606445312 3 350.546671 1048.61818 NaN NaN NaN NaN NaN NaN NaN 29.055 1 25.753 25.253 26.253 -3.3016 0 0 0 0.54558 1 16269 16269 14.405 3.5815 1 32795 13472 21833 22244 38586 38586 0.09582049676350834 LKWWQWWIWWW 11 Unmodified _LKWWQWWIWWW_ 0 0 0 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 902.452880859375 2 902.450988 1802.88742 NaN NaN NaN NaN NaN NaN NaN 79.677 1 79.732 79.232 80.232 0.05497 0 0 0 0.9435 1 44029 44029 0 0 1 + 32796 16776 21834 22245 38587 38587 0.0180956357287414 LKWYCIVYIC 10 Unmodified _LKWYCIVYIC_ 0 0 0 ENST00000374994.8_2_9:101915367-101915715:+|nuORF ENST00000374994.8_2_9:101915367-101915715:+|nuORF ENST00000374994.8_2_9:101915367-101915715:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826904296875 3 435.224101 1302.65047 -0.0016766 -7.2969E-07 -3.7945 -0.0016515 -3.7962 -0.0016522 435.2221963568553 38.147 0.2842 37.876 37.802 38.086 -0.27133 16 12 2 0 0 0 0.24005 1 20069 20069 0.77653 0.27058 1 1028500 32797 12467 21835 22246 38588 38588 0.011253329728560857 LKYITIAL 8 Unmodified _LKYITIAL_ 0 0 0 nc|ENSG00000135119|Q96EX2-4|RNFT2;nc|ENSG00000135119|Q96EX2-3|RNFT2;ENST00000547718.5_1_12:117186478-117290514:+|nuORF;nc|ENSG00000135119|Q96EX2-5|RNFT2;ENSG00000135119|ENST00000257575|RNFT2 nc|ENSG00000135119|Q96EX2-4|RNFT2 nc|ENSG00000135119|Q96EX2-4|RNFT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.8389282226562 2 467.802229 933.589904 NaN NaN NaN NaN NaN NaN NaN 0.80815 1 0.78753 0.28753 1.2875 -0.020623 0 0 0 0.97444 1 416 416 0.69038 0 1 32798 4673 21836 22247 38589 38589 0.12045306976403936 LKYLEPYYF 9 Unmodified _LKYLEPYYF_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2485656738281 3 412.549747 1234.62741 0.5467 0.00022554 -1.922 -0.00079293 -1.3753 -0.00056739 412.5487349667973 57.05 0.16074 56.984 56.917 57.078 -0.066032 12 7 2 0 0 0 0.21404 1 31012 31012 5.2969 1.1074 1 3008600 + 32799 24010 21837 22248 38590 38590 0.019483534513710765 LKYLQRERL 9 Unmodified _LKYLQRERL_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9150695800781 3 406.915423 1217.72444 -0.43728 -0.00017794 0.03983 1.6207E-05 -0.39745 -0.00016173 406.9154112601308 31.391 0.52811 31.421 31.247 31.775 0.030104 74 23 5 0 0 0 0.171 1 16396 16396 26.021 2.2196 1 230900000 + 32800 17994 21838 22249 38591 38591 0.1242876045103003 LKYLQRERL 9 Unmodified _LKYLQRERL_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.9158630371094 3 406.915423 1217.72444 1.5138 0.00061597 0.09127 3.7139E-05 1.605 0.00065311 406.91540774352654 79.372 0.98328 73.196 72.762 73.746 -6.1757 172 56 4 0 0 0 0.2289 1 51801 51801 20.581 1.8597 1 112550000 + 32801 17994 21838 22249 38592 38592 0.1242876045103003 LKYLYFLY 8 Unmodified _LKYLYFLY_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.1497497558594 3 374.879316 1121.61612 1.5495 0.00058086 1.2253 0.00045935 2.7748 0.0010402 374.87961774156736 36.935 0.32733 32.652 32.438 32.765 -4.2835 26 19 2 0 0 0 8.7369 1 21690 21690 4.3292 2.6766 1 5795800 32802 4276 21839 22250 38593 38593 0.060175761479058565 LKYPLLLKE 9 Unmodified _LKYPLLLKE_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.9052124023438 3 372.905754 1115.69543 0.35612 0.0001328 -0.44479 -0.00016587 -0.088676 -3.3068E-05 372.9055217880071 57.83 0.67855 57.341 57.024 57.702 -0.48974 55 32 2 0 0 0 0.50598 1 31492 31492 7.1017 0 1 2981100 32803 5779 21840 22251 38594 38594 0.14221223102049407 LKYPLLLKE 9 Unmodified _LKYPLLLKE_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.9060668945312 3 372.905754 1115.69543 0.73199 0.00027296 0.20595 7.6799E-05 0.93794 0.00034976 372.90580411373145 57.531 0.7976 57.465 56.998 57.795 -0.066032 97 39 3 0 0 0 0.46162 1 31267 31267 9.544 0 1 6765700 32804 5779 21840 22251 38595 38595 0.14221223102049407 LKYPLLLKE 9 Unmodified _LKYPLLLKE_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.90673828125 3 372.905754 1115.69543 1.6266 0.00060656 0.080429 2.9993E-05 1.707 0.00063656 372.90568682445587 88.64 1.0291 82.464 81.993 83.022 -6.1757 144 57 3 0 0 0 0.46162 1 58332 58332 9.544 0 1 35406000 32805 5779 21840 22251 38596 38596 0.14221223102049407 LKYQRILER 9 Unmodified _LKYQRILER_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.9151916503906 3 406.915423 1217.72444 0.17664 7.1879E-05 0.31232 0.00012709 0.48896 0.00019896 406.91556136946014 31.558 0.21751 31.456 31.357 31.575 -0.10269 21 8 3 0 0 0 0.36306 1 16413 16413 14.218 0 1 6506100 32806 10167 21841 22252 38597 38597 0.1242876045103003 LKYRFFYQ 8 Unmodified _LKYRFFYQ_ 0 0 0 ENSG00000223501|ENST00000445902|VPS52;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENST00000495755.1_1_6:33235423-33235928:-|nuORF ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.8952941894531 3 388.878198 1163.61277 0.87764 0.0003413 -0.57141 -0.00022221 0.30623 0.00011909 388.878264833581 45.502 0.25846 40.547 40.41 40.669 -4.9549 26 17 2 0 0 0 8.7369 1 27844 27844 3.9444 3.9444 1 13827000 32807 10571 21842 22253 38598 38598 0.03750326093904732 LKYWFLRNH 9 Unmodified _LKYWFLRNH_ 0 0 0 REV__ENST00000492622.6_1_13:49580405-49649464:+|nuORF REV__ENST00000492622.6_1_13:49580405-49649464:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2355651855469 3 426.236497 1275.68766 NaN NaN NaN NaN NaN NaN NaN 17.278 1 17.292 16.792 17.792 0.013865 0 0 0 0.83812 1 8578 8578 2.9952 1.0889 1 + 32808 27906 21843 22254 38599 38599 0.06084508625121998 LKYYKDRG 8 Unmodified _LKYYKDRG_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7883911132812 2 521.787641 1041.56073 -0.36053 -0.00018812 0.45918 0.0002396 0.098652 5.1475E-05 521.7879502273221 55.765 0.1943 55.697 55.588 55.782 -0.068737 19 9 3 0 0 0 0.50673 1 30300 30300 34.102 1.797 1 4438200 32809 9877 21844 22255 38600 38600 0.04161162680134112 LLAAASIAY 9 Unmodified _LLAAASIAY_ 0 0 0 ENST00000514824.5_1_6:11714744-11735835:-|nuORF;ENSG00000111863|ENST00000414691|ADTRP;nc|ENSG00000111863|Q96IZ2-2|ADTRP;nc|ENSG00000111863|Q96IZ2-3|ADTRP ENST00000514824.5_1_6:11714744-11735835:-|nuORF ENST00000514824.5_1_6:11714744-11735835:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 892.51416015625 1 892.513845 891.506569 -0.24225 -0.00021621 0.51504 0.00045968 0.27279 0.00024347 892.5142022796005 77.023 1.1208 70.848 70.431 71.551 -6.1757 149 62 3 0 0 0 0.045537 2 50403 50403;50761 46.921 4.8263 1 87415000 32810 2839 21845 22256 38601;38602 38601 0.05647570528560664 LLAALTAYK 9 Unmodified _LLAALTAYK_ 0 0 0 ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF;ENST00000496816.5_1_20:62325699-62327208:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.2961120605469 2 482.29731 962.580068 NaN NaN NaN NaN NaN NaN NaN 107.28 1 101.11 100.61 101.61 -6.1757 0 0 0 0.85852 1 71766 71766 0.45834 0 1 32811 10817 21846 22257 38603 38603 0.09728118971031563 LLAARPRG 8 Unmodified _LLAARPRG_ 0 0 0 REV__ENST00000308020.5_1_11:450281-450398:+|nuORF REV__ENST00000308020.5_1_11:450281-450398:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2729187011719 2 427.271961 852.52937 0.33105 0.00014145 1.147 0.0004901 1.4781 0.00063155 427.27229602722923 99.199 1.3636 99.005 98.241 99.605 -0.19321 83 46 2 0 0 0 0.80975 1 54049 54049 0.79363 0 1 679050 + 32812 25393 21847 22258 38604 38604 0.09720634436712317 LLAARPRG 8 Unmodified _LLAARPRG_ 0 0 0 REV__ENST00000308020.5_1_11:450281-450398:+|nuORF REV__ENST00000308020.5_1_11:450281-450398:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 427.271961 852.52937 0.33105 0.00014145 1.147 0.0004901 1.4781 0.00063155 427.27229602722923 99.199 1.3636 99.005 98.241 99.605 -0.19321 0 0 NaN 0.79363 83 46 2 NaN NaN NaN NaN 0 NaN NaN 0 679050 + 32813 25393 21847 22258 0.09720634436712317 LLACCLFLL 9 Unmodified _LLACCLFLL_ 0 0 0 ENST00000262746.5_1_1:45987346-45987496:-|nuORF ENST00000262746.5_1_1:45987346-45987496:-|nuORF ENST00000262746.5_1_1:45987346-45987496:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7832641601562 2 504.784667 1007.55478 0.22759 0.00011488 -3.7215 -0.0018786 -3.4939 -0.0017637 504.78330126340194 31.035 0.22022 31.035 30.932 31.152 0 20 10 3 0 0 0 0.53666 1 16205 16205 5.2307 0 1 2829100 32814 11275 21848 22259 38605 38605 0.051306048526043924 LLACGTYQL 9 Unmodified _LLACGTYQL_ 0 0 0 ENST00000479650.5_1_9:140470535-140473334:-|nuORF;ENST00000460572.1_1_9:140470815-140473160:-|nuORF;ENST00000475100.5_1_9:140470815-140473334:-|nuORF;ENST00000472113.5_1_9:140471923-140473334:-|nuORF;ENSG00000148399|ENST00000277540|DPH7 ENST00000479650.5_1_9:140470535-140473334:-|nuORF ENST00000479650.5_1_9:140470535-140473334:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.2572937011719 2 491.257328 980.500103 NaN NaN NaN NaN NaN NaN NaN 63.357 1 57.182 56.682 57.682 -6.1757 0 0 0 0.6032 1 40946 40946 12.532 0 1 32815 14043 21849 22260 38606 38606 0.00907309305534909 LLADELITV 9 Unmodified _LLADELITV_ 0 0 0 ENST00000479237.5_1_9:131770965-131773053:-|nuORF;ENST00000461811.5_1_9:131770965-131772716:-|nuORF;ENSG00000148341|ENST00000372564|SH3GLB2;nc|ENSG00000148341|Q9NR46-2|SH3GLB2 ENST00000479237.5_1_9:131770965-131773053:-|nuORF ENST00000479237.5_1_9:131770965-131773053:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7926025390625 2 493.792058 985.569563 NaN NaN NaN NaN NaN NaN NaN 83.021 1 83.021 82.521 83.521 0 0 0 0 0.7453 1 46047 46047 7.9102 2.1497 1 32816 5920 21850 22261 38607 38607 0.07620091525950556 LLAENALSL 9 Unmodified _LLAENALSL_ 0 0 0 REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.277587890625 2 472.276575 942.538597 1.0317 0.00048724 -0.14743 -6.9629E-05 0.88424 0.00041761 472.27633575226656 50.518 0.61353 44.979 44.68 45.294 -5.5391 63 38 2 0 0 0 0.032796 1 31526 31526 53.833 0 1 47523000 + 32817 20393 21851 22262 38608 38608 0.06502938211713172 LLAEPVPGI 9 Unmodified _LLAEPVPGI_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.5455932617188 1 908.545145 907.537869 -0.12962 -0.00011777 1.1049 0.0010039 0.97532 0.00088612 908.5459112961047 70.335 0.24551 70.335 70.203 70.449 0 14 9 2 0 0 0 0.2001 1 39171 39171 23.148 3.7094 1 559610 32818 16605 21852 22263 38609 38609 0.0804014356266407 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3164672851562 2 553.316232 1104.61791 0.77978 0.00043146 0.57635 0.00031891 1.3561 0.00075037 553.3164456757122 60.691 0.39062 60.691 60.494 60.885 0 53 16 5 0 0 0 0.043414 2 33793 33793;33895 59.368 15.51 1 18292000 32819 10212;13830 21853 22264 38610;38611 38610 0.0697858516582528 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.316650390625 2 553.316232 1104.61791 -0.16394 -9.0712E-05 0.37788 0.00020909 0.21394 0.00011838 553.3163186472202 61.126 0.36208 60.636 60.456 60.818 -0.48932 43 17 4 0 0 0 0.052231 2 33244 33244;33342 47.594 11.467 1 40247000 32820 10212;13830 21853 22264 38612;38613 38612 0.0697858516582528 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3162231445312 2 553.316232 1104.61791 0.6546 0.0003622 -1.8487 -0.0010229 -1.1941 -0.00066073 553.3154935232461 66.885 0.91216 60.709 60.473 61.385 -6.1757 143 51 5 0 0 0 0.037118 2 43597 43460;43597 63.961 16.212 1 121180000 32821 10212;13830 21853 22264 38614;38615 38615 0.0697858516582528 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3162231445312 2 553.316232 1104.61791 0.99608 0.00055115 0.77229 0.00042732 1.7684 0.00097847 553.3166272091025 69.164 0.17375 62.988 62.855 63.029 -6.1757 13 9 2 0 0 0 0.037118 1 45181 45181 55.503 7.1569 1 19015000 32822 10212;13830 21853 22264 38616 38616 0.0697858516582528 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3165283203125 2 553.316232 1104.61791 0.80975 0.00044805 -0.59523 -0.00032935 0.21452 0.0001187 553.315679438932 69.472 0.61913 63.296 63.029 63.648 -6.1757 46 33 2 0 0 0 0.052231 1 45444 45444 47.594 11.467 1 20727000 32823 10212;13830 21853 22264 38617 38617 0.0697858516582528 LLAERDLYL 9 Unmodified _LLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 553.316232 1104.61791 0.77978 0.00043146 0.57635 0.00031891 1.3561 0.00075037 553.3164456757122 60.691 0.39062 60.691 60.494 60.885 0 0.012193 0.00069528 NaN 63.961 53 16 5 NaN NaN NaN NaN 0 NaN NaN 0 18292000 32824 10212;13830 21853 22264 0.0697858516582528 LLAETHYQL 9 Unmodified _LLAETHYQL_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2941284179688 2 544.292756 1086.57096 0.25287 0.00013764 0.1258 6.8469E-05 0.37866 0.0002061 544.2928492626645 48.098 0.19815 48.098 47.995 48.193 0 13 9 2 0 0 0 0.094149 1 26366 26366 34.402 0.29928 1 2588700 32825 14844 21854 22265 38618 38618 0.031137256147076187 LLAETHYQL 9 Unmodified _LLAETHYQL_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2921752929688 2 544.292756 1086.57096 0.21189 0.00011533 -0.38443 -0.00020924 -0.17254 -9.3912E-05 544.2925554663665 48.334 0.23015 47.962 47.831 48.061 -0.37172 18 11 2 0 0 0 0.094149 1 25959 25959 34.402 3.7652 1 2768100 32826 14844 21854 22265 38619 38619 0.031137256147076187 LLAGLHVLL 9 Unmodified _LLAGLHVLL_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.8161315917969 2 474.81567 947.616788 1.6799 0.00079763 -0.36047 -0.00017116 1.3194 0.00062647 474.8154874417328 81.665 0.27548 81.725 81.584 81.86 0.059929 26 10 3 0 0 0 0.047696 1 45154 45154 45.75 5.3014 1 2800100 32827 550 21855 22266 38620 38620 0.1408841558760514 LLAGWFSGFL 10 Unmodified _LLAGWFSGFL_ 0 0 0 REV__ENST00000403662.7_2_22:37334948-37335272:+|nuORF REV__ENST00000403662.7_2_22:37334948-37335272:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.8707580566406 3 370.870932 1109.59097 NaN NaN NaN NaN NaN NaN NaN 28.083 1 28.083 27.583 28.583 0 0 0 0 0.99091 1 14493 14493 0.69767 0 1 + 32828 26629 21856 22267 38621 38621 0.04055521345321722 LLAHHLVDGS 10 Unmodified _LLAHHLVDGS_ 0 0 0 REV__ENST00000488353.2_3_1:2333717-2334484:+|nuORF REV__ENST00000488353.2_3_1:2333717-2334484:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8480834960938 2 531.290548 1060.56654 0.3296 0.00017512 0.15684 8.3329E-05 0.48645 0.00025844 531.2907716801911 60.435 0.34266 60.392 60.152 60.495 -0.04351 32 16 3 0 0 0 0.22993 1 32850 32850 12.532 4.6214 1 14026000 + 32829 27844 21857 22268 38622 38622 0.03868261191814781 LLAHRLLNKF 10 Unmodified _LLAHRLLNKF_ 0 0 0 ENST00000438138.1_1_10:71538815-71539190:+|nuORF ENST00000438138.1_1_10:71538815-71539190:+|nuORF ENST00000438138.1_1_10:71538815-71539190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8817138671875 2 612.882407 1223.75026 4.3614 0.002673 -4.019 -0.0024632 0.34246 0.00020989 612.8789845264843 98.78 0.30676 98.752 98.584 98.891 -0.028282 26 10 4 0 0 0 0.71276 1 54837 54837 1.4819 0.8804 1 31762000 32830 13358 21858 22269 38623 38623 0.14733654693304743 LLAIHLHL 8 Unmodified _LLAIHLHL_ 0 0 0 nc|ENSG00000230257|Q86UQ8|NFE4 nc|ENSG00000230257|Q86UQ8|NFE4 nc|ENSG00000230257|Q86UQ8|NFE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.3001403808594 2 465.300188 928.585822 0.33775 0.00015715 -1.249 -0.00058117 -0.91128 -0.00042402 465.29972492552645 60.281 0.17801 60.236 60.151 60.329 -0.044956 14 8 2 0 0 0 0.70131 1 32861 32861 17.087 0 1 6161600 32831 16557 21859 22270 38624 38624 0.11867262273358392 LLAKDINGRRQ 11 Unmodified _LLAKDINGRRQ_ 0 0 0 REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.5902099609375 3 428.589599 1282.74697 1.7147 0.00073488 0.67566 0.00028958 2.3903 0.0010245 428.58965722367805 105.01 0.14782 98.83 98.719 98.867 -6.1757 22 10 3 0 0 0 0.73992 1 70277 70277 0.50596 0 1 55242000 + 32832 26797 21860 22271 38625 38625 0.11690359848648768 LLAKHWKLL 9 Unmodified _LLAKHWKLL_ 0 0 0 ENSG00000167700|ENST00000301327|MFSD3 ENSG00000167700|ENST00000301327|MFSD3 ENSG00000167700|ENST00000301327|MFSD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8810119628906 3 374.577972 1120.71209 0.168 6.2929E-05 1.496 0.00056038 1.664 0.0006233 374.5785457492235 43.22 0.2752 43.22 43.084 43.359 0 21 13 2 0 0 0 0.2188 1 23473 23473 1.0715 0.80244 1 2371900 32833 7659 21861 22272 38626 38626 0.15655768778628953 LLALGPLL 8 Unmodified _LLALGPLL_ 0 0 0 ENSG00000164638|ENST00000396872|SLC29A4 ENSG00000164638|ENST00000396872|SLC29A4 ENSG00000164638|ENST00000396872|SLC29A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.5494384765625 1 809.549502 808.542226 0.96857 0.0007841 -0.26472 -0.0002143 0.70385 0.0005698 809.5493989219985 101.85 0.070045 95.671 95.63 95.7 -6.1757 6 3 2 0 0 0 0.2373 1 68367 68367 64.081 0 1 16878000 32834 7219 21862 22273 38627 38627 0.13029652776242528 LLALHRRPR 9 Unmodified _LLALHRRPR_ 0 0 0 REV__ENST00000395872.5_1_12:28123019-28123091:-|nuORF REV__ENST00000395872.5_1_12:28123019-28123091:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3670043945312 2 566.364716 1130.71488 1.7274 0.00097836 -0.1866 -0.00010568 1.5408 0.00087267 566.8664978295445 104.3 0.12017 98.128 98.052 98.172 -6.1757 18 12 2 0 0 0 0.61256 1 69857 69857 0.6015 0.076735 1 16012000 + 32835 26491 21863 22274 38628 38628 0.15475036956172517 LLALLAHG 8 Unmodified _LLALLAHG_ 0 0 0 nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6;nc|ENSG00000063015|Q53EL9-4|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2588806152344 2 404.257988 806.501424 1.688 0.00068237 0.89656 0.00036244 2.5845 0.0010448 404.2580969815737 105.5 0.23271 99.326 99.267 99.5 -6.1757 51 22 3 0 0 0 0.80975 1 70668 70668 0.79363 0 1 29332000 32836 854 21864 22275 38629 38629 0.09043311456605352 LLANKVPAA 9 Unmodified _LLANKVPAA_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000459899.1_1_14:35857513-35858113:-|nuORF;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0;ENST00000496593.5_1_11:61404148-61405105:+|nuORF nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7824096679688 2 448.781828 895.549102 1.3689 0.00061435 -1.9273 -0.00086496 -0.55843 -0.00025061 448.7808030386384 37.43 0.44992 33.146 32.873 33.322 -4.2835 45 26 2 0 0 0 0.023164 1 21886 21886 60.39 30.165 1 14541000 32837 1518;14375 21865 22276 38630 38630 0.09714965656792174 LLAPIRVLL 9 Unmodified _LLAPIRVLL_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656349-34659376:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.3528137207031 2 504.35242 1006.69029 1.0597 0.00053446 0.14856 7.4927E-05 1.2083 0.00060939 504.3523729652299 99.449 0.10931 93.274 93.214 93.324 -6.1757 9 6 2 0 0 0 0.2143 1 66273 66273 21.747 3.6117 1 18754000 32838 8595 21866 22277 38631 38631 0.18720964030080722 LLAPRPVAV 9 Unmodified _LLAPRPVAV_ 0 0 0 ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.3053894042969 2 468.30547 934.596387 0.55767 0.00026116 1.0877 0.00050938 1.6454 0.00077054 468.3064392064703 47.544 0.14945 47.506 47.411 47.561 -0.038643 15 6 3 0 0 0 0.012148 1 25618 25618 74.423 16.951 1 5036500 32839 4162 21867 22278 38632 38632 0.12647244927791235 LLAPRPVAV 9 Unmodified _LLAPRPVAV_ 0 0 0 ENSG00000129757|ENST00000440480|CDKN1C;nc|ENSG00000129757|P49918|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C ENSG00000129757|ENST00000440480|CDKN1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.3052368164062 2 468.30547 934.596387 1.0169 0.00047621 -0.27377 -0.00012821 0.74312 0.00034801 468.30527157619576 53.578 0.25996 47.773 47.603 47.863 -5.8042 19 16 2 0 0 0 0.042911 1 33849 33849 48.346 14.243 1 14502000 32840 4162 21867 22278 38633 38633 0.12647244927791235 LLAPVAAPA 9 Unmodified _LLAPVAAPA_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 822.50927734375 1 822.508366 821.501089 -0.022737 -1.8702E-05 1.4684 0.0012077 1.4456 0.001189 822.5094921048268 53.34 0.30305 52.888 52.762 53.065 -0.45173 33 14 3 0 0 0 0.016115 2 28825 28825;28928 67.413 21.663 1 6657600 32841 3395 21868 22279 38634;38635 38634 0.08319891736744012 LLAPVAAPA 9 Unmodified _LLAPVAAPA_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7582092285156 2 411.757821 821.501089 0.42342 0.00017435 0.53585 0.00022064 0.95927 0.00039499 411.7579984875923 53.398 0.26302 52.946 52.783 53.046 -0.45173 29 12 3 0 0 0 0.085487 1 28843 28843 36.466 8.2929 1 3301600 32842 3395 21868 22279 38636 38636 0.08319891736744012 LLAPVAAPA 9 Unmodified _LLAPVAAPA_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7577819824219 2 411.757821 821.501089 1.254 0.00051633 -0.22794 -9.3857E-05 1.026 0.00042247 411.7576043709853 61.152 0.30946 55.004 54.846 55.156 -6.1478 20 15 2 0 0 0 0.016115 1 39370 39370 67.413 21.663 1 35308000 32843 3395 21868 22279 38637 38637 0.08319891736744012 LLAPVAAPA 9 Unmodified _LLAPVAAPA_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 822.509521484375 1 822.508366 821.501089 1.2424 0.0010219 -0.72344 -0.00059504 0.51895 0.00042684 822.5075513272805 61.135 0.38179 54.987 54.793 55.175 -6.1478 32 19 2 0 0 0 0.016115 1 39417 39417 67.413 21.663 1 26277000 32844 3395 21868 22279 38638 38638 0.08319891736744012 LLAQISALAL 10 Unmodified _LLAQISALAL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.8210754394531 2 506.823692 1011.63283 -1.2558 -0.00063649 0.73981 0.00037495 -0.51602 -0.00026153 506.82397556706565 56.248 0.19164 55.763 55.672 55.863 -0.48554 15 9 2 0 0 0 0.16361 1 30534 30534 38.176 2.0485 1 5942800 32845 1295 21869 22280 38639 38639 0.12748077033825211 LLAQRSPP 8 Unmodified _LLAQRSPP_ 0 0 0 REV__ENST00000442885.2_1_11:65655295-65655958:-|nuORF REV__ENST00000442885.2_1_11:65655295-65655958:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2641296386719 2 441.263802 880.513051 0.45137 0.00019917 -0.60964 -0.00026901 -0.15827 -6.984E-05 441.26349086811365 40.837 0.16366 40.534 40.418 40.582 -0.30304 11 7 2 0 0 0 0.80148 1 21619 21619 5.7319 1.4026 1 1968100 + 32846 22656 21870 22281 38640 38640 0.06801508479941276 LLAQWELEV 9 Unmodified _LLAQWELEV_ 0 0 0 ENST00000524856.1_1_11:65374036-65375591:-|nuORF;nc|ENSG00000173327|Q16584-2|MAP3K11;ENSG00000173327|ENST00000309100|MAP3K11 ENST00000524856.1_1_11:65374036-65375591:-|nuORF ENST00000524856.1_1_11:65374036-65375591:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5457153320312 3 367.53773 1099.59136 -0.12876 -4.7324E-05 1.5705 0.00057723 1.4418 0.00052991 367.5382404378896 30.295 0.29033 30.326 30.207 30.498 0.030104 19 12 2 0 0 0 0.32871 1 15810 15810 10.8 0 1 6401100 32847 8316 21871 22282 38641 38641 0.04554896274521525 LLARLTLPV 9 Unmodified _LLARLTLPV_ 0 0 0 REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.8195190429688 2 498.334227 994.653902 0.36343 0.00018111 1.6929 0.00084361 2.0563 0.0010247 498.335112450283 99.791 0.14999 93.616 93.541 93.691 -6.1757 26 10 4 0 0 0 0.12572 1 66518 66518 32.117 1.8922 1 210900000 + 32848 26096 21872 22283 38642 38642 0.15636087133373167 LLASSVPEL 9 Unmodified _LLASSVPEL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5345458984375 1 928.534975 927.527698 0.48543 0.00045074 -2.3236 -0.0021576 -1.8382 -0.0017068 928.5344903508834 67.627 0.17904 67.145 67.053 67.232 -0.48218 10 7 2 0 0 0 0.078417 1 36959 36959 38.151 7.9264 1 775240 32849 8967 21873 22284 38643 38643 0.061035358374169846 LLASSVPEL 9 Unmodified _LLASSVPEL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7721862792969 2 464.771126 927.527698 0.44884 0.00020861 0.96579 0.00044887 1.4146 0.00065748 464.7715316910692 67.663 0.2486 67.181 67.075 67.323 -0.48218 14 10 2 0 0 0 0.28047 1 36999 36999 18.135 4.6271 1 873420 32850 8967 21873 22284 38644 38644 0.061035358374169846 LLATGDDFGF 10 Unmodified _LLATGDDFGF_ 0 0 0 nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.4129638671875 2 528.25584 1054.49713 0.63215 0.00033394 -0.72197 -0.00038139 -0.08982 -4.7448E-05 528.2556064232742 74.373 0.25634 73.897 73.741 73.997 -0.47588 18 10 2 0 0 0 0.68719 1 40652 40652 4.3292 0 1 1158900 32851 10499 21874 22285 38645 38645 -0.027942425476112476 LLATHSPFSI 10 Unmodified _LLATHSPFSI_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.2449340820312 2 543.303124 1084.5917 0.97382 0.00052908 -3.5357 -0.001921 -2.5619 -0.0013919 543.301053708205 61.373 0.20001 55.225 55.195 55.395 -6.1478 11 9 2 0 0 0 0.19561 1 39527 39527 30.637 2.1497 1 15146000 32852 8841 21875 22286 38646 38646 0.05278315994382865 LLATLVQKL 9 Unmodified _LLATLVQKL_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7889709472656 2 499.83406 997.653567 0.49436 0.0002471 -0.54884 -0.00027433 -0.054483 -2.7232E-05 500.33520742797816 71.935 0.26405 71.974 71.809 72.073 0.039024 19 12 2 0 0 0 0.20528 1 39656 39656 8.5933 2.2392 1 1383000 + 32853 19133 21876 22287 38647 38647 0.15464667413527877 LLAVKQDLI 9 Unmodified _LLAVKQDLI_ 0 0 0 REV__ENSG00000181045|ENST00000361193|SLC26A11 REV__ENSG00000181045|ENST00000361193|SLC26A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8245544433594 2 506.823692 1011.63283 0.46286 0.00023459 0.3104 0.00015732 0.77326 0.00039191 506.8238773034586 62.179 0.42403 56.004 55.859 56.283 -6.1757 34 24 2 0 0 0 0.044011 1 40067 40067 47.749 0 1 19005000 + 32854 23186 21877 22288 38648 38648 0.1274807703384795 LLAVKQDLI 9 Unmodified _LLAVKQDLI_ 0 0 0 REV__ENSG00000181045|ENST00000361193|SLC26A11 REV__ENSG00000181045|ENST00000361193|SLC26A11 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 506.823692 1011.63283 0.46286 0.00023459 0.3104 0.00015732 0.77326 0.00039191 506.8238773034586 62.179 0.42403 56.004 55.859 56.283 -6.1757 0.12058 -7.168E-05 NaN 47.749 34 24 2 NaN NaN NaN NaN 0 NaN NaN 0 19005000 + 32855 23186 21877 22288 0.1274807703384795 LLAWPLLSS 9 Unmodified _LLAWPLLSS_ 0 0 0 REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF REV__ENST00000533210.5_1_8:144650334-144650907:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2769775390625 2 500.29731 998.580068 0.50706 0.00025368 -1.5408 -0.00077085 -1.0337 -0.00051717 500.29630813168137 39.245 0.20558 39.245 39.115 39.321 0 16 9 2 0 0 0 0.18118 1 20949 20949 12.532 0.29089 1 1796600 + 32856 28475 21878 22289 38649 38649 0.08072118971062991 LLCECLLLSCL 11 Unmodified _LLCECLLLSCL_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-3|CLCC1 REV__nc|ENSG00000121940|Q96S66-3|CLCC1 MSMS AL20221201_MKP_PDAC_01 4 408.2135314941406 3 408.212984 1221.61712 NaN NaN NaN NaN NaN NaN NaN 92.087 1 85.911 85.411 86.411 -6.1757 0 0 0 0.14852 1 60890 60890 42.835 5.0639 1 + 32857 19320 21879 22290 38650 38650 0.015179631386672554 LLCFAVWFLL 10 Unmodified _LLCFAVWFLL_ 0 0 0 REV__nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2 REV__nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8998413085938 3 408.899834 1223.67767 -0.19311 -7.8962E-05 1.0281 0.00042037 0.83495 0.00034141 408.900133735216 15.9 0.071389 15.905 15.871 15.943 0.0050564 6 5 2 0 0 0 0.70951 1 7949 7949 0.77653 0 1 264490 + 32858 30008 21880 22291 38651 38651 0.07478184575529667 LLCFFFLL 8 Unmodified _LLCFFFLL_ 0 0 0 ENST00000541143.5_1_12:131453487-131453694:+|nuORF ENST00000541143.5_1_12:131453487-131453694:+|nuORF ENST00000541143.5_1_12:131453487-131453694:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2884521484375 2 508.2879 1014.56125 0.58237 0.00029601 -0.28617 -0.00014546 0.2962 0.00015056 508.2879246408318 66.597 0.27962 66.597 66.491 66.77 0 18 12 2 0 0 0 0.76859 1 37190 37190 11.114 0.93107 1 1267500 32859 15041 21881 22292 38652 38652 0.05454866075638165 LLCFFFLVF 9 Unmodified _LLCFFFLVF_ 0 0 0 ENST00000380338.8_1_9:20346347-20346425:-|nuORF ENST00000380338.8_1_9:20346347-20346425:-|nuORF ENST00000380338.8_1_9:20346347-20346425:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.5460510253906 3 383.54528 1147.61401 NaN NaN NaN NaN NaN NaN NaN 39.48 1 35.029 34.529 35.529 -4.4509 0 0 0 0.70111 1 23436 23436 5.7319 2.7366 1 32860 12594 21882 22293 38653 38653 0.04610824138444514 LLCHHEAE 8 Unmodified _LLCHHEAE_ 0 0 0 REV__nc|ENSG00000144827|Q9NUJ1-2|ABHD10 REV__nc|ENSG00000144827|Q9NUJ1-2|ABHD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2221374511719 2 476.221277 950.428001 0.41672 0.00019845 0.75173 0.00035799 1.1685 0.00055644 476.22148943860543 65.184 0.34369 64.7 64.491 64.835 -0.48428 36 15 3 0 0 0 0.80143 1 35525 35525 5.7604 5.7604 1 6362500 + 32861 20739 21883 22294 38654 38654 -0.04919605048166886 LLCLFGRRF 9 Unmodified _LLCLFGRRF_ 0 0 0 ENST00000351365.7_1_18:77663978-77709700:-|nuORF ENST00000351365.7_1_18:77663978-77709700:-|nuORF ENST00000351365.7_1_18:77663978-77709700:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.6823425292969 3 375.551428 1123.63245 NaN NaN NaN NaN NaN NaN NaN 39.568 1 39.579 39.079 40.079 0.011452 0 0 0 0.84369 1 21078 21078 1.1933 0 1 32862 12046 21884 22295 38655 38655 0.07558378833005008 LLCLINCAVL 10 Unmodified _LLCLINCAVL_ 0 0 0 REV__ENSG00000105983|ENST00000353442|LMBR1 REV__ENSG00000105983|ENST00000353442|LMBR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8062744140625 2 537.806131 1073.59771 1.0505 0.00056495 -0.3407 -0.00018323 0.70976 0.00038172 537.8058831427738 40.997 0.35487 36.389 36.244 36.599 -4.6079 39 21 2 0 0 0 0.42068 1 24524 24524 20.454 2.3073 1 15166000 + 32863 18480 21885 22296 38656 38656 0.06385374910018982 LLCMEEYVI 9 Unmodified _LLCMEEYVI_ 0 0 0 ENST00000471337.5_1_1:45805924-45808422:+|nuORF;nc|ENSG00000132773|Q96GM8-2|TOE1;ENSG00000132773|ENST00000372090|TOE1 ENST00000471337.5_1_1:45805924-45808422:+|nuORF ENST00000471337.5_1_1:45805924-45808422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.77099609375 2 556.771954 1111.52935 0.35619 0.00019832 -1.477 -0.00082235 -1.1208 -0.00062404 556.7706756087206 100.95 0.16058 100.91 100.79 100.95 -0.04216 8 5 3 0 0 0 0.55144 1 56102 56102 4.3292 0 1 3650000 32864 4449 21886 22297 38657 38657 -0.021949144604832327 LLCNKLFPLAI 11 Unmodified _LLCNKLFPLAI_ 0 0 0 REV__ENST00000420679.1_1_2:139308594-139326647:+|nuORF REV__ENST00000420679.1_1_2:139308594-139326647:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.921142578125 3 415.586027 1243.73625 NaN NaN NaN NaN NaN NaN NaN 24.679 1 24.703 24.203 25.203 0.024429 0 0 0 0.86932 1 12741 12741 4.4062 0 1 + 32865 26836 21887 22298 38658 38658 0.12413241150011345 LLCNLDIIL 9 Carbamidomethyl (C) _LLC(Carbamidomethyl (C))NLDIIL_ LLC(1)NLDIIL LLC(78)NLDIIL 0 1 0 nc|ENSG00000111802|O95551-3|TDP2;ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2 nc|ENSG00000111802|O95551-3|TDP2 nc|ENSG00000111802|O95551-3|TDP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8150634765625 2 543.81501 1085.61547 1.5628 0.00084989 -0.98632 -0.00053637 0.57651 0.00031351 543.8145421658736 100.88 0.12886 94.7 94.635 94.764 -6.1757 13 7 2 0 0 0 0.010877 1 67571 67571 77.984 25.716 1 57218000 32866 2830 21888 22299 38659 38659 293 0.07608413436537376 LLCPSWIWC 9 Unmodified _LLCPSWIWC_ 0 0 0 REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1819763183594 3 374.182124 1119.52454 NaN NaN NaN NaN NaN NaN NaN 0.13127 1 0.1092 -0.3908 0.6092 -0.022065 0 0 0 0.85737 1 71 71 0.26902 0 1 + 32867 28832 21889 22300 38660 38660 -0.03043753812585237 LLCQLDTF 8 Unmodified _LLCQLDTF_ 0 0 0 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.74365234375 2 476.744053 951.473554 0.91889 0.00043808 -0.29805 -0.00014209 0.62084 0.00029598 476.7439491984776 49.77 0.93603 49.378 49.077 50.013 -0.3923 91 46 3 0 0 0 0.77907 2 26671 26671;26897 10.183 0 1 3996100 32868 16378 21890 22301 38661;38662 38661 -0.0041237958580495615 LLCRAWKT 8 Unmodified _LLCRAWKT_ 0 0 0 ENST00000426191.2_1_11:73363993-73372644:+|nuORF ENST00000426191.2_1_11:73363993-73372644:+|nuORF ENST00000426191.2_1_11:73363993-73372644:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7820434570312 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 94.622 1 94.202 93.702 94.702 -0.42044 0 0 0 0.97444 1 51693 51693 0.79363 0 1 32869 13174 21891 22302 38663 38663 0.05286428016233913 LLCSDEDL 8 Unmodified _LLCSDEDL_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;ENSG00000175311|ENST00000311620|ANKS4B nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2086181640625 2 454.207501 906.400449 NaN NaN NaN NaN NaN NaN NaN 64.675 1 64.675 64.175 65.175 0 0 0 0 0.97444 1 36071 36071 2.8892 0 1 32870 358 21892 22303 38664 38664 -0.056495530990673615 LLCSSSSSL 9 Unmodified _LLCSSSSSL_ 0 0 0 ENST00000534842.1_1_12:53647415-53647604:+|nuORF ENST00000534842.1_1_12:53647415-53647604:+|nuORF ENST00000534842.1_1_12:53647415-53647604:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.7242736816406 2 448.723318 895.432083 NaN NaN NaN NaN NaN NaN NaN 78.604 1 72.428 71.928 72.928 -6.1757 0 0 0 0.20498 1 51463 51463 30.225 7.0764 1 32871 14960 21893 22304 38665 38665 -0.019815603451206698 LLCTSAFALL 10 Unmodified _LLCTSAFALL_ 0 0 0 REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175 REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2970581054688 2 526.296453 1050.57835 1.0415 0.00054814 -0.84571 -0.00044509 0.1958 0.00010305 526.2967819892281 91.024 1.4337 84.848 83.968 85.401 -6.1757 204 83 3 0 0 0 0.31022 2 60160 60160;60279 26.884 2.2098 1 66503000 + 32872 19580 21894 22305 38666;38667 38666 0.055087418907760366 LLCYFVAL 8 Unmodified _LLCYFVAL_ 0 0 0 REV__ENSG00000179934|ENST00000326306|CCR8 REV__ENSG00000179934|ENST00000326306|CCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2619934082031 2 471.261882 940.509211 -0.19468 -9.1744E-05 -0.089107 -4.1993E-05 -0.28378 -0.00013374 471.2619446810812 25.664 0.31246 25.664 25.486 25.799 0 27 14 3 0 0 0 0.61999 1 13126 13126 24.21 7.1234 1 2105200 + 32873 23128 21895 22306 38668 38668 0.03657702661882922 LLCYFVAL 8 Unmodified _LLCYFVAL_ 0 0 0 REV__ENSG00000179934|ENST00000326306|CCR8 REV__ENSG00000179934|ENST00000326306|CCR8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.261882 940.509211 -0.19468 -9.1744E-05 -0.089107 -4.1993E-05 -0.28378 -0.00013374 471.2619446810812 25.664 0.31246 25.664 25.486 25.799 0 0 0 NaN 24.21 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2105200 + 32874 23128 21895 22306 0.03657702661882922 LLCYFVALL 9 Unmodified _LLCYFVALL_ 0 0 0 REV__ENSG00000179934|ENST00000326306|CCR8 REV__ENSG00000179934|ENST00000326306|CCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.2053527832031 3 352.205035 1053.59328 -0.41724 -0.00014695 0.1518 5.3463E-05 -0.26544 -9.3489E-05 352.20501827817253 25.277 0.19821 25.277 25.147 25.346 0 25 9 4 0 0 0 0.53666 1 12933 12933 2.9952 0 1 1388500 + 32875 23128 21896 22307 38669 38669 0.06862233758783987 LLCYIMET 8 Unmodified _LLCYIMET_ 0 0 0 ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2400207519531 2 493.240289 984.466026 NaN NaN NaN NaN NaN NaN NaN 19.588 1 19.596 19.096 20.096 0.0078487 0 0 0 0.97444 1 9969 9969 0.79363 0 1 32876 9322 21897 22308 38670 38670 -0.02682855177727106 LLDAGSFNTFL 11 Unmodified _LLDAGSFNTFL_ 0 0 0 REV__nc|ENSG00000135457|Q12800-2|TFCP2 REV__nc|ENSG00000135457|Q12800-2|TFCP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.3631591796875 2 599.311146 1196.60774 0.62543 0.00037483 0.70047 0.0004198 1.3259 0.00079463 599.311065346765 94.182 0.16678 88.006 87.916 88.083 -6.1757 16 9 2 0 0 0 0.21616 1 62368 62368 22.658 0 1 8666800 + 32877 20069 21898 22309 38671 38671 0.01729977440595576 LLDAPLLGR 9 Unmodified _LLDAPLLGR_ 0 0 0 nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1 nc|ENSG00000196408|Q8NFA2-4|NOXO1 nc|ENSG00000196408|Q8NFA2-4|NOXO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2658996582031 2 484.300384 966.586216 -0.27672 -0.00013401 -0.33084 -0.00016023 -0.60756 -0.00029424 484.30007538313373 55.927 0.36982 55.858 55.685 56.055 -0.068741 48 19 3 0 0 0 0.18118 1 30356 30356 19.257 2.3147 1 29598000 32878 9812 21899 22310 38672 38672 0.10158637202584941 LLDASDKHLF 10 Unmodified _LLDASDKHLF_ 0 0 0 REV__ENSG00000053702|ENST00000337508|NRIP2 REV__ENSG00000053702|ENST00000337508|NRIP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.0540161132812 3 386.876634 1157.60807 1.7643 0.00068255 3.7962 0.0014687 5.5605 0.0021512 386.8777456990302 41.671 0.40422 37.063 36.846 37.25 -4.6079 44 26 2 0 0 0 0.22811 1 25059 25059 8.9762 0 1 11603000 + 32879 17277 21900 22311 38673 38673 0.0355739716046628 LLDDFDAII 9 Unmodified _LLDDFDAII_ 0 0 0 REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF REV__ENST00000489501.1_1_5:7802261-7826981:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7711791992188 2 517.773865 1033.53318 1.1232 0.00058156 -1.0054 -0.00052057 0.11779 6.0989E-05 517.7732503931003 88.992 0.96096 82.816 82.221 83.182 -6.1757 175 53 4 0 0 0 0.12841 1 58484 58484 30.225 1.738 1 303400000 + 32880 17625 21901 22312 38674 38674 0.017752146292423276 LLDDGDEESL 10 Unmodified _LLDDGDEESL_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.751953125 2 553.248408 1104.48226 0.54973 0.00030414 1.3197 0.00073012 1.8694 0.0010343 553.2488062820087 94.427 0.30646 94.006 93.856 94.162 -0.42043 22 16 2 0 0 0 0.67046 1 51574 51574 3.5965 0 1 413840 + 32881 23945 21902 22313 38675 38675 -0.06579779206253988 LLDDTTVTL 9 Unmodified _LLDDTTVTL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.5346069335938 1 990.535368 989.528092 -0.044961 -4.4535E-05 0.34454 0.00034128 0.29958 0.00029675 990.5359094647054 64.547 0.28632 64.547 64.386 64.672 0 24 14 2 0 0 0 0.06187 1 35962 35962 42.095 7.9921 1 1056600 32882 5686 21903 22314 38676 38676 0.0329091076663417 LLDEAIQAV 9 Unmodified _LLDEAIQAV_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2745361328125 2 486.274032 970.533512 -0.048385 -2.3528E-05 0.8816 0.0004287 0.83321 0.00040517 486.2743958951455 61.377 0.23245 60.888 60.777 61.009 -0.48932 15 10 2 0 0 0 0.2001 1 33439 33439 23.148 5.0134 1 1038000 32883 1001;15373 21904 22315 38677 38677 0.0470663434908829 LLDEAIQAV 9 Unmodified _LLDEAIQAV_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46715399-46723351:-|nuORF;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35;ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENSG00000069329|ENST00000299138|VPS35 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 486.274032 970.533512 0.52042 0.00025307 0.9764 0.0004748 1.4968 0.00072786 486.27394336619784 60.843 0.35381 60.843 60.646 60.999 0 -0.022106 6.1707E-05 NaN 23.148 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4372500 32884 1001;15373 21904 22315 0.0470663434908829 LLDEEEDDSF 10 Unmodified _LLDEEEDDSF_ 0 0 0 REV__ENSG00000068615|ENST00000538924|REEP1 REV__ENSG00000068615|ENST00000538924|REEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.7996215820312 3 404.503191 1210.48774 -0.0090409 -3.6571E-06 4.3969 0.0017786 4.3878 0.0017749 404.8394893057688 55.135 0.079651 55.066 55.038 55.117 -0.068737 5 3 2 0 0 0 0.23981 1 29976 29976 0.77653 0.27058 1 1284600 + 32885 17437 21905 22316 38678 38678 -0.10908100414485489 LLDEGLVP 8 Unmodified _LLDEGLVP_ 0 0 0 ENSG00000205221|ENST00000379242|VIT ENSG00000205221|ENST00000379242|VIT ENSG00000205221|ENST00000379242|VIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 855.4830322265625 1 855.482211 854.474934 0.93334 0.00079845 -0.25355 -0.00021691 0.67979 0.00058155 855.4819316033066 101.23 0.13462 95.054 94.99 95.125 -6.1757 14 8 2 0 0 0 0.21786 1 67877 67877 67.035 0 1 48678000 32886 10354 21906 22317 38679 38679 0.041875777746213316 LLDELSDEF 9 Unmodified _LLDELSDEF_ 0 0 0 REV__ENSG00000172404|ENST00000307221|DNAJB7 REV__ENSG00000172404|ENST00000307221|DNAJB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7577514648438 2 540.758412 1079.50227 1.4279 0.00077217 -1.3897 -0.00075147 0.03828 2.07E-05 540.7571064556151 103.13 0.078117 96.954 96.908 96.986 -6.1757 39 18 3 0 0 0 0.39863 1 69172 69172 12.532 0 1 10200000 + 32887 22649 21907 22318 38680 38680 -0.034299834756666314 LLDEPTNHL 9 Unmodified _LLDEPTNHL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2769165039062 2 526.274564 1050.53457 0.29873 0.00015722 1.889 0.00099414 2.1877 0.0011514 526.2758258041705 40.211 0.24361 40.211 40.089 40.333 0 23 11 3 0 0 0 0.014417 1 21634 21634 69.105 0 1 3091200 32888 597 21908 22319 38681 38681 0.011328487179980584 LLDEQQVNV 9 Unmodified _LLDEQQVNV_ 0 0 0 nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1 nc|ENSG00000125968|P41134-2|ID1 nc|ENSG00000125968|P41134-2|ID1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2809448242188 2 529.279846 1056.54514 NaN NaN NaN NaN NaN NaN NaN 46.568 1 46.568 46.068 47.068 0 0 0 0 0.20153 1 25457 25457 30.637 13.694 1 32889 3916 21909 22320 38682 38682 0.019128313724195323 LLDFHHPHQL 10 Unmodified _LLDFHHPHQL_ 0 0 0 GAD1|p.V138L|1|0.14|ENSG00000128683|chr2:170831057-170831057|G/T|missense_variant GAD1|p.V138L|1|0.14|ENSG00000128683|chr2:170831057-170831057|G/T|missense_variant GAD1|p.V138L|1|0.14|ENSG00000128683|chr2:170831057-170831057|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.558837890625 3 419.556007 1255.64619 0.62168 0.00026083 3.7061 0.0015549 4.3277 0.0018157 419.557510790169 56.973 0.31465 56.905 56.74 57.054 -0.068737 23 15 2 0 0 0 0.69377 1 31024 31024 1.7423 0 1 2797300 32890 15898 21910 22321 38683 38683 0.028593278657808696 LLDKETLRL 9 Unmodified _LLDKETLRL_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5605163574219 3 367.560646 1099.66011 1.3415 0.00049307 -0.4229 -0.00015544 0.91855 0.00033762 367.561012374806 18.452 0.30648 15.83 15.655 15.962 -2.6215 56 29 3 0 0 0 0.50598 1 9730 9730 7.1017 0 1 3972500 32891 6727 21911 22322 38684 38684 0.11426560574227551 LLDKNCHLL 9 Carbamidomethyl (C) _LLDKNC(Carbamidomethyl (C))HLL_ LLDKNC(1)HLL LLDKNC(64)HLL 0 1 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8746948242188 3 375.874348 1124.60121 1.0635 0.00039975 0.15105 5.6775E-05 1.2146 0.00045653 375.8745841604315 44.02 0.49946 39.255 39.002 39.502 -4.7648 79 33 4 0 0 0 0.01958 2 26706 26706;26840 63.961 27.454 1 61362000 32892 7921 21912 22323 38685;38686 38685 773 0.043897610082240135 LLDKYFGSV 9 Unmodified _LLDKYFGSV_ 0 0 0 ENSG00000106367|ENST00000337619|AP1S1;nc|ENSG00000106367|P61966-2|AP1S1;nc|ENSG00000182287|P56377|AP1S2;ENSG00000182287|ENST00000672987|AP1S2;nc|ENSG00000182287|P56377-2|AP1S2 ENSG00000106367|ENST00000337619|AP1S1 ENSG00000106367|ENST00000337619|AP1S1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7646484375 2 521.2844 1040.55425 0.43038 0.00022435 0.75123 0.0003916 1.1816 0.00061595 521.2848063716092 52.142 0.21877 51.708 51.59 51.809 -0.43367 24 10 3 0 0 0 0.19298 1 28196 28196 8.5933 3.8373 1 1836200 32893 2422 21913 22324 38687 38687 0.035592247287468126 LLDKYWTKI 9 Unmodified _LLDKYWTKI_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.3429565429688 2 590.342249 1178.66995 0.29027 0.00017136 0.14153 8.3554E-05 0.43181 0.00025491 590.3423578600851 63.509 0.30689 63.023 62.864 63.171 -0.48617 35 13 3 0 0 0 0.38785 1 34599 34599 13.042 13.042 1 7463800 32894 2865 21914 22325 38688 38688 0.08775748579591891 LLDKYWTKI 9 Unmodified _LLDKYWTKI_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8449096679688 2 590.342249 1178.66995 -0.46917 -0.00027697 0.11498 6.7877E-05 -0.35419 -0.00020909 590.3418080093007 55.959 0.33204 55.891 55.743 56.075 -0.068737 35 17 3 0 0 0 0.23158 1 30394 30394 20.454 0.039092 1 7390200 32895 2865 21914 22325 38689 38689 0.08775748579591891 LLDKYWTKI 9 Unmodified _LLDKYWTKI_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 590.342249 1178.66995 0.29027 0.00017136 0.14153 8.3554E-05 0.43181 0.00025491 590.3423578600851 63.509 0.30689 63.023 62.864 63.171 -0.48617 -0.018207 -0.00063726 NaN 13.042 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7463800 32896 2865 21914 22325 0.08775748579591891 LLDKYWTKI 9 Unmodified _LLDKYWTKI_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 590.342249 1178.66995 0.30749 0.00018153 1.0527 0.00062145 1.3602 0.00080298 590.3428168414598 63.081 0.33321 63.06 62.888 63.222 -0.021614 0.018207 0.00043854 NaN 13.042 54 16 4 NaN NaN NaN NaN 0 NaN NaN 0 60782000 32897 2865 21914 22325 0.08775748579591891 LLDLPNPVI 9 Unmodified _LLDLPNPVI_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 ENSG00000145675|ENST00000521381|PIK3R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3025817871094 2 497.302593 992.590633 0.26089 0.00012974 0.48411 0.00024075 0.745 0.00037049 497.30279208511064 81.546 0.34525 81.546 81.37 81.715 0 43 17 3 0 0 0 0.5029 1 45308 45308 7.2892 0 1 1539500 32898 5710 21915 22326 38690 38690 0.09404101625477779 LLDLRASVVDW 11 Unmodified _LLDLRASVVDW_ 0 0 0 REV__ENST00000245206.9_1_16:58741141-58741300:-|nuORF REV__ENST00000245206.9_1_16:58741141-58741300:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8624267578125 2 643.858795 1285.70304 2.5376 0.0016339 1.5482 0.00099681 4.0858 0.0026307 643.8596975746013 99.97 0.19088 99.934 99.855 100.05 -0.036301 18 6 4 0 0 0 0.5229 1 55538 55538 15.248 1.3424 1 4412100 + 32899 24857 21916 22327 38691 38691 0.07161330631652163 LLDLVSPW 8 Unmodified _LLDLVSPW_ 0 0 0 REV__ENST00000314485.11_2_1:160061198-160061616:-|nuORF REV__ENST00000314485.11_2_1:160061198-160061616:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7678833007812 2 471.768386 941.522219 1.0469 0.00049389 -0.8987 -0.00042398 0.1482 6.9915E-05 471.7678398878491 79.767 0.37867 79.278 79.075 79.454 -0.48932 26 16 2 0 0 0 0.28922 1 43658 43658 56.541 9.6204 1 1485800 + 32900 25448 21917 22328 38692 38692 0.04911857045613033 LLDLVSPW 8 Unmodified _LLDLVSPW_ 0 0 0 REV__ENST00000314485.11_2_1:160061198-160061616:-|nuORF REV__ENST00000314485.11_2_1:160061198-160061616:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 942.5303344726562 1 942.529495 941.522219 0.92056 0.00086765 -1.622 -0.0015288 -0.70147 -0.00066116 942.5281954927085 79.766 0.25996 79.277 79.117 79.377 -0.48932 16 11 2 0 0 0 0.31612 1 43688 43688 53.576 2.7205 1 702580 + 32901 25448 21917 22328 38693 38693 0.04911857045613033 LLDMEPLV 8 Unmodified _LLDMEPLV_ 0 0 0 ENST00000583517.1_1_17:26370242-26374944:+|nuORF ENST00000583517.1_1_17:26370242-26374944:+|nuORF ENST00000583517.1_1_17:26370242-26374944:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.502685546875 1 929.501232 928.493955 0.85956 0.00079896 0.94224 0.00087581 1.8018 0.0016748 929.5020315800401 101.5 0.09906 95.32 95.274 95.373 -6.1757 7 4 2 0 0 0 0.19792 1 68120 68120 70.716 10.326 1 13286000 32902 15588 21918 22329 38694 38694 0.026847910740229963 LLDNLAPA 8 Unmodified _LLDNLAPA_ 0 0 0 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.4659423828125 1 826.466895 825.459619 -0.10881 -8.9929E-05 -0.983 -0.00081242 -1.0918 -0.00090235 826.466026919763 70 0.58075 70 69.797 70.377 0 162 59 3 0 0 0 0.19688 2 39030 38930;39030 71.134 12.455 1 43938000 32903 9699 21919 22330 38695;38696 38696 0.039907109774162564 LLDNLAPA 8 Unmodified _LLDNLAPA_ 0 0 0 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4669189453125 1 826.466895 825.459619 0.54714 0.00045219 -0.2039 -0.00016852 0.34324 0.00028368 826.466832312925 70.022 0.34511 70.053 69.902 70.247 0.030914 28 17 2 0 0 0 0.28079 1 38582 38582 57.471 2.6978 1 6022600 32904 9699 21919 22330 38697 38697 0.039907109774162564 LLDNLAPA 8 Unmodified _LLDNLAPA_ 0 0 0 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 ENSG00000188800|ENST00000372766|TMCO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.4653930664062 1 826.466895 825.459619 0.49417 0.00040842 -0.36765 -0.00030385 0.12652 0.00010457 826.4664684523661 78.35 1.1249 72.175 71.754 72.879 -6.1757 203 66 4 0 0 0 0.19688 2 51677 51285;51677 71.134 3.7897 1 211680000 32905 9699 21919 22330 38698;38699 38699 0.039907109774162564 LLDNTRHGP 9 Unmodified _LLDNTRHGP_ 0 0 0 nc|ENSG00000198689|Q92581-3|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6;nc|ENSG00000198689|Q92581|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 nc|ENSG00000198689|Q92581-3|SLC9A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2950439453125 2 511.772522 1021.53049 0.43598 0.00022312 0.72196 0.00036948 1.1579 0.0005926 512.273871552574 66.432 0.31706 66.432 66.216 66.533 0 17 13 2 0 0 0 0.20727 1 36974 36974 7.9102 0.62092 1 561910 32906 10123 21920 22331 38700 38700 0.020588040149505105 LLDPRIYYI 9 Unmodified _LLDPRIYYI_ 0 0 0 ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF ENSG00000144063|ENST00000272462|MALL ENSG00000144063|ENST00000272462|MALL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3350830078125 2 583.334424 1164.6543 0.6876 0.0004011 0.049917 2.9118E-05 0.73751 0.00043022 583.3340596239472 74.778 0.32366 74.824 74.616 74.94 0.045959 35 14 3 0 0 0 0.10247 2 41158 41158;41265 32.786 13.529 1 3665300 32907 5584 21921 22332 38701;38702 38701 0.07855462062548213 LLDPSVFHV 9 Unmodified _LLDPSVFHV_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000538784.2_1_12:132635515-132636943:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.785400390625 2 513.784567 1025.55458 NaN NaN NaN NaN NaN NaN NaN 72.034 1 71.558 71.058 72.058 -0.47609 0 0 0 0.7243 1 39419 39419 8.5933 0.68312 1 32908 9308 21922 22333 38703 38703 0.04282644448608153 LLDQLSGRTC 10 Unmodified _LLDQLSGRTC_ 0 0 0 REV__ENSG00000132518|ENST00000254854|GUCY2D REV__ENSG00000132518|ENST00000254854|GUCY2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2855224609375 2 553.287148 1104.55974 0.61232 0.00033879 -0.059326 -3.2825E-05 0.55299 0.00030596 553.2869842780264 47.685 0.24664 47.646 47.581 47.827 -0.038643 27 11 3 0 0 0 0.33553 1 25707 25707 25.399 0 1 5703900 + 32909 19859 21923 22334 38704 38704 0.011645802489283597 LLDQRFLK 8 Unmodified _LLDQRFLK_ 0 0 0 REV__nc|ENSG00000141564|Q8N122-3|RPTOR REV__nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8133544921875 2 516.813659 1031.61277 1.1737 0.00060658 -1.1973 -0.00061881 -0.023664 -1.223E-05 516.8127737529841 91.966 0.37544 85.79 85.53 85.906 -6.1757 51 21 3 0 0 0 0.32798 1 60690 60690 52.268 2.3353 1 25208000 + 32910 20545 21924 22335 38705 38705 0.09822326093899392 LLDQYREF 8 Unmodified _LLDQYREF_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;ENST00000550036.1_1_12:105556619-105558145:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2778930664062 2 542.277106 1082.53966 NaN NaN NaN NaN NaN NaN NaN 71.987 1 71.987 71.487 72.487 0 0 0 0 0.97444 1 40090 40090 2.8892 0 1 32911 4782 21925 22336 38706 38706 0.0016915258061089844 LLDRFLATV 9 Unmodified _LLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3153076171875 2 524.313492 1046.61243 0.92656 0.00048581 1.357 0.00071152 2.2836 0.0011973 524.314115775073 71.324 0.4485 71.363 71.13 71.579 0.039024 56 19 4 0 0 0 0.0085386 2 39227 39227;39332 100.09 46.258 1 37291000 32912 3394 21926 22337 38707;38708 38707 0.09098906374038052 LLDRMVHL 8 Unmodified _LLDRMVHL_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7859802246094 2 498.786587 995.558621 0.31104 0.00015514 -1.1894 -0.00059328 -0.8784 -0.00043814 498.78595074249915 81.16 0.34605 81.16 81.024 81.37 0 29 16 2 0 0 0 0.80624 1 45124 45124 2.8892 0 1 741920 32913 1921 21927 22338 38709 38709 0.06066410670666755 LLDSAPLNV 9 Unmodified _LLDSAPLNV_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2679748535156 2 471.26875 940.522947 NaN NaN NaN NaN NaN NaN NaN 63.05 1 63.05 62.55 63.55 0 0 0 0 0.23581 1 35171 35171 28.487 14.979 1 32914 4659 21928 22339 38710 38710 0.05030651694653443 LLDSAPLNV 9 Unmodified _LLDSAPLNV_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2688293457031 2 471.26875 940.522947 0.3669 0.00017291 0.73102 0.00034451 1.0979 0.00051742 471.2688504917856 63.592 0.24307 63.106 62.969 63.212 -0.48617 16 10 2 0 0 0 0.038285 1 34680 34680 50.855 27.707 1 1175100 32915 4659 21928 22339 38711 38711 0.05030651694653443 LLDSDKQSI 9 Unmodified _LLDSDKQSI_ 0 0 0 ENST00000465832.5_1_7:117008647-117066986:-|nuORF ENST00000465832.5_1_7:117008647-117066986:-|nuORF ENST00000465832.5_1_7:117008647-117066986:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2774047851562 2 509.774396 1017.53424 0.44617 0.00022744 1.3231 0.00067446 1.7692 0.0009019 509.7752680757531 61.264 0.45554 61.264 60.999 61.455 0 66 19 4 0 0 0 0.48152 1 34249 34249 8.5933 0.68312 1 6570000 32916 13741 21929 22340 38712 38712 0.026174289981327092 LLDSLWIL 8 Unmodified _LLDSLWIL_ 0 0 0 REV__nc|ENSG00000153982|Q8N9F7-3|GDPD1 REV__nc|ENSG00000153982|Q8N9F7-3|GDPD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.791748046875 2 486.791861 971.569169 NaN NaN NaN NaN NaN NaN NaN 77.572 1 77.089 76.589 77.589 -0.4826 0 0 0 0.95607 1 42468 42468 9.3474 0 1 + 32917 21200 21930 22341 38713 38713 0.08224716596760118 LLDSVPVEL 9 Unmodified _LLDSVPVEL_ 0 0 0 REV__ENSG00000153395|ENST00000283415|LPCAT1 REV__ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 984.5613403320312 1 984.561189 983.553913 0.16126 0.00015877 -0.086199 -8.4868E-05 0.075063 7.3904E-05 984.5609214311355 69.069 0.26652 69.069 68.911 69.177 0 19 11 2 0 0 0 0.2001 1 38459 38459 23.148 0 1 1317300 + 32918 21170 21931 22342 38714 38714 0.06147805008902196 LLDSVPVEL 9 Unmodified _LLDSVPVEL_ 0 0 0 REV__ENSG00000153395|ENST00000283415|LPCAT1 REV__ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 984.561189 983.553913 0.16126 0.00015877 -0.086199 -8.4868E-05 0.075063 7.3904E-05 984.5609214311355 69.069 0.26652 69.069 68.911 69.177 0 -0.031639 -0.0002159 NaN 23.148 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1317300 + 32919 21170 21931 22342 0.06147805008902196 LLDTDYDNF 9 Unmodified _LLDTDYDNF_ 0 0 0 ENSG00000122133|ENST00000479141|PAEP;nc|ENSG00000122133|P09466-2|PAEP ENSG00000122133|ENST00000479141|PAEP ENSG00000122133|ENST00000479141|PAEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.25 2 558.248212 1114.48187 0.41306 0.00023059 1.363 0.00076091 1.7761 0.0009915 558.2496215168196 76.453 0.32172 76.453 76.315 76.637 0 22 12 3 0 0 0 0.58865 1 42598 42598 2.0598 0 1 588770 32920 3624 21932 22343 38715 38715 -0.07079154135476529 LLDTFANVM 9 Unmodified _LLDTFANVM_ 0 0 0 ENST00000229329.6_1_12:22218108-22218213:+|nuORF ENST00000229329.6_1_12:22218108-22218213:+|nuORF ENST00000229329.6_1_12:22218108-22218213:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.26220703125 2 512.26261 1022.51067 0.99083 0.00050756 0.18878 9.6705E-05 1.1796 0.00060427 512.2626778609135 50.271 0.47793 44.731 44.466 44.944 -5.5391 62 30 3 0 0 0 0.14602 1 31387 31387 28.487 5.3384 1 37437000 32921 11059 21933 22344 38716 38716 0.0003129195997644274 LLDTMIKLKRV 11 Unmodified _LLDTMIKLKRV_ 0 0 0 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 REV__nc|ENSG00000008323|Q3KR16-2|PLEKHG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.9490051269531 3 443.947736 1328.82138 1.0063 0.00044675 1.7104 0.00075932 2.7167 0.0012061 443.948849869596 101.46 0.11929 95.283 95.211 95.33 -6.1757 7 5 2 0 0 0 0.74046 1 68096 68096 0.45452 0.046251 1 10436000 + 32922 17024 21934 22345 38717 38717 0.17011986615784735 LLDTSTIHG 9 Unmodified _LLDTSTIHG_ 0 0 0 nc|ENSG00000070886|P29322-2|EPHA8;ENSG00000070886|ENST00000166244|EPHA8 nc|ENSG00000070886|P29322-2|EPHA8 nc|ENSG00000070886|P29322-2|EPHA8 MSMS AL20221201_MKP_PDAC_01 4 478.7549133300781 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 36.017 1 31.824 31.324 32.324 -4.1928 0 0 0 0.6306 1 20982 20982 11.64 1.4569 1 32923 1044 21935 22346 38718 38718 0.017931771722601297 LLDTVTMQV 9 Unmodified _LLDTVTMQV_ 0 0 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2757568359375 2 510.275718 1018.53688 0.6467 0.00033 -2.2149 -0.0011302 -1.5682 -0.0008002 510.2739370799809 73.619 0.24543 67.443 67.243 67.489 -6.1757 15 11 2 0 0 0 0.14602 1 48107 48107 28.487 5.3384 1 11231000 32924 8996 21936 22347 38719 38719 0.028355611314509588 LLDVKHCTQKY 11 Unmodified _LLDVKHCTQKY_ 0 0 0 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.8857727050781 3 449.907829 1346.70166 -0.12599 -5.6682E-05 0.93976 0.00042281 0.81377 0.00036612 449.9085639922674 20.264 0.20307 20.264 20.175 20.378 0 18 13 2 0 0 0 0.30596 1 10163 10163 0.84494 0.21812 1 435180 32925 6114 21937 22348 38720 38720 0.042173732712399215 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.5240478515625 1 898.52441 897.517133 -0.0024878 -2.2353E-06 0.0014685 1.3195E-06 -0.0010193 -9.1588E-07 898.5242398921924 64.621 0.4458 64.621 64.386 64.831 0 63 21 4 0 0 0 0.008678 2 36052 35950;36052 88.904 34.13 1 25622000 32926 10541 21938 22349 38721;38722 38722 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7650146484375 2 449.765843 897.517133 0.33224 0.00014943 -0.41438 -0.00018637 -0.082136 -3.6942E-05 449.7655224975398 64.615 0.40424 64.615 64.427 64.831 0 45 19 3 0 0 0 0.2001 2 35994 35994;36109 23.148 5.0134 1 8310400 32927 10541 21938 22349 38723;38724 38723 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 898.5244750976562 1 898.52441 897.517133 -0.32789 -0.00029462 0.6204 0.00055744 0.29251 0.00026283 898.5248903569586 65.161 0.40526 64.677 64.47 64.876 -0.48428 56 18 4 0 0 0 0.0095811 2 35592 35484;35592 81.613 26.84 1 33659000 32928 10541 21938 22349 38725;38726 38726 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7666625976562 2 449.765843 897.517133 0.22478 0.0001011 0.32293 0.00014524 0.54771 0.00024634 449.7658855840631 65.16 0.32265 64.676 64.491 64.814 -0.48428 35 14 3 0 0 0 0.14602 2 35513 35513;35633 28.487 5.0134 1 4071300 32929 10541 21938 22349 38727;38728 38727 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 899.5293579101562 1 898.52441 897.517133 0.95228 0.00085564 0.49789 0.00044737 1.4502 0.001303 898.5245875562081 64.7 0.24165 64.7 64.558 64.8 7.6294E-06 19 11 2 0 0 0 0.30562 1 35396 35396 16.942 2.3606 1 2415000 32930 10541 21938 22349 38729 38729 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 898.5238037109375 1 898.52441 897.517133 0.77476 0.00069614 0.61543 0.00055298 1.3902 0.0012491 898.5245631214987 72.028 0.51929 65.853 65.604 66.123 -6.1757 76 27 4 0 0 0 0.0095811 3 46997 46997;47141;47264 81.613 29.039 1 282610000 32931 10541 21938 22349 38730;38731;38732 38730 0.06427553182993506 LLDVPTAAV 9 Unmodified _LLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7657775878906 2 449.765843 897.517133 1.18 0.00053073 -0.36762 -0.00016534 0.81239 0.00036538 449.765533470497 72.003 0.48406 65.827 65.619 66.104 -6.1757 63 25 3 0 0 0 0.026094 3 47142 47006;47142;47271 57.471 19.32 1 163880000 32932 10541 21938 22349 38733;38734;38735 38734 0.06427553182993506 LLDVTPLSL 9 Unmodified _LLDVTPLSL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7935791015625 2 485.794601 969.574648 0.56248 0.00027325 -1.4463 -0.00070263 -0.88387 -0.00042938 485.7939191189659 90.802 0.30646 90.308 90.187 90.493 -0.49457 34 24 2 0 0 0 0.038285 1 49609 49609 50.855 6.448 1 3025100 32933 2688;2938 21939 22350 38736 38736 0.08864395388582125 LLDVYKKYV 9 Unmodified _LLDVYKKYV_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2332763671875 3 380.893625 1139.65905 -0.24617 -9.3763E-05 -0.65128 -0.00024807 -0.89745 -0.00034183 380.8934166010165 36.964 0.36289 36.986 36.767 37.13 0.021545 48 16 4 0 0 0 0.5636 1 19510 19510 3.5871 0 1 7896900 + 32934 21434 21940 22351 38737 38737 0.09480346205327805 LLDVYKKYV 9 Unmodified _LLDVYKKYV_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2332763671875 3 380.893625 1139.65905 -0.24617 -9.3763E-05 -0.65128 -0.00024807 -0.89745 -0.00034183 380.8934166010165 36.964 0.36289 36.986 36.767 37.13 0.021545 48 16 4 0 0 0 0.21302 1 19510 19510 3.5871 0 1 7896900 + 32935 21434 21940 22351 38738 38738 0.09480346205327805 LLEAHAERVAQ 11 Unmodified _LLEAHAERVAQ_ 0 0 0 REV__SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant REV__SPTBN5|p.S3503Ffs*21|1|0.07|ENSG00000137877|chr15:41852258-41852259|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8366088867188 2 618.838394 1235.66223 NaN NaN NaN NaN NaN NaN NaN 102.34 1 102.29 101.79 102.79 -0.045853 0 0 0 0.69464 1 56844 56844 17.113 3.2068 1 + 32936 20280 21941 22352 38739 38739 0.05382989312033715 LLEATPLCSQ 10 Unmodified _LLEATPLCSQ_ 0 0 0 ENST00000325327.3_1_19:2429314-2429548:-|nuORF ENST00000325327.3_1_19:2429314-2429548:-|nuORF ENST00000325327.3_1_19:2429314-2429548:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.232177734375 2 537.778625 1073.5427 1.5478 0.00083238 3.406 0.0018317 4.9538 0.002664 537.7801292850866 100.9 0.12886 94.728 94.635 94.764 -6.1757 9 7 2 0 0 0 0.22667 1 67576 67576 15.847 5.0233 1 17819000 32937 11811 21942 22353 38740 38740 0.008866596431062135 LLEAVRLPF 9 Unmodified _LLEAVRLPF_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2991333007812 2 529.32386 1056.63317 0.85578 0.00045298 0.8752 0.00046326 1.731 0.00091625 529.8266570423701 101.5 0.1209 95.32 95.252 95.373 -6.1757 9 5 2 0 0 0 0.20528 1 68074 68074 4.756 0 1 4551900 32938 6856 21943 22354 38741 38741 0.10711496753697247 LLECYSTT 8 Unmodified _LLECYSTT_ 0 0 0 REV__ENSG00000196850|ENST00000354300|PPTC7 REV__ENSG00000196850|ENST00000354300|PPTC7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7198486328125 2 465.217869 928.421184 0.56876 0.0002646 0.18002 8.375E-05 0.74879 0.00034835 465.21797973349436 85.025 0.40021 85.025 84.868 85.269 0 28 21 2 0 0 0 8.7369 1 47193 47193 13.508 0 1 1595300 + 32939 23875 21944 22355 38742 38742 -0.04588962719412848 LLEELIVK 8 Unmodified _LLEELIVK_ 0 0 0 nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.3128662109375 2 478.804968 955.595384 1.4512 0.00069485 0.34097 0.00016326 1.7922 0.00085811 478.8049839730005 95.642 0.29547 89.466 89.334 89.63 -6.1757 47 18 3 0 0 0 8.7369 1 63271 63271 8.5933 0 1 62819000 32940 6323 21945 22356 38743 38743 0.11580985768239316 LLEGAVIVY 9 Unmodified _LLEGAVIVY_ 0 0 0 nc|ENSG00000121775|Q9GZU3-4|TMEM39B;ENST00000468135.5_1_1:32542241-32568271:+|nuORF;ENSG00000121775|ENST00000336294|TMEM39B;ENST00000476968.5_1_1:32560475-32568271:+|nuORF nc|ENSG00000121775|Q9GZU3-4|TMEM39B nc|ENSG00000121775|Q9GZU3-4|TMEM39B MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7897338867188 2 488.789318 975.564084 0.1174 5.7385E-05 0.93773 0.00045835 1.0551 0.00051574 488.7896656460902 98.976 0.11313 92.8 92.764 92.878 -6.1757 10 6 2 0 0 0 0.019979 1 65810 65810 63.563 19.156 1 19541000 32941 3600 21946 22357 38744 38744 0.075324127341446 LLEGEECR 8 Unmodified _LLEGEECR_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;CON__Q3TTY5;ENSG00000186049|ENST00000305748|KRT73;CON__P07744;CON__Q7RTS7;ENSG00000170484|ENST00000305620|KRT74;CON__Q32MB2;ENSG00000170423|ENST00000304620|KRT78;CON__Q8N1N4-2;CON__Q7RTT2;nc|ENSG00000100285|P12036-2|NEFH;CON__REFSEQ:XP_932229;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000100285|ENST00000310624|NEFH;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENSG00000186081|ENST00000252242|KRT5;CON__P13647 CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5 CON__P35908 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2533569335938 2 474.726392 947.438231 0.99904 0.00047427 -0.87005 -0.00041304 0.12899 6.1235E-05 474.72581327649317 80.47 0.32158 79.978 79.83 80.152 -0.49247 20 12 2 0 0 0 8.7369 1 44149 44149 2.0598 0 1 541420 + 32942 177;9374;170;9329 21947 22358 38745 38745 -0.03759042113608757 LLEHWQLH 8 Unmodified _LLEHWQLH_ 0 0 0 ENST00000401766.6_2_17:28545150-28545855:-|nuORF ENST00000401766.6_2_17:28545150-28545855:-|nuORF ENST00000401766.6_2_17:28545150-28545855:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.0280456542969 3 359.194298 1074.56106 -0.59121 -0.00021236 -1.0427 -0.00037453 -1.6339 -0.00058689 359.19389702239755 16.528 0.14994 16.528 16.417 16.567 0 57 42 2 0 0 0 8.7369 1 8051 8051 4.3292 1.334 1 818850 32943 12884 21948 22359 38746 38746 0.026765823999767235 LLEILMPP 8 Unmodified _LLEILMPP_ 0 0 0 ENST00000518561.5_1_12:50821599-50821632:+|nuORF ENST00000518561.5_1_12:50821599-50821632:+|nuORF ENST00000518561.5_1_12:50821599-50821632:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.5426635742188 1 925.542702 924.535426 1.5342 0.00142 -1.6365 -0.0015147 -0.10234 -9.472E-05 925.5409487285056 100.95 0.081352 94.771 94.734 94.815 -6.1757 7 4 2 0 0 0 0.44122 1 67640 67640 40.449 0 1 10177000 32944 14693 21949 22360 38747 38747 0.07013971833350752 LLEKDPYAL 9 Unmodified _LLEKDPYAL_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2969970703125 2 531.297507 1060.58046 NaN NaN NaN NaN NaN NaN NaN 91.99 1 91.509 91.009 92.009 -0.48092 0 0 0 0.70111 1 50285 50285 9.3474 0 1 32945 6059 21950 22361 38748 38748 0.05259493900234702 LLEKFQIAL 9 Unmodified _LLEKFQIAL_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8316040039062 2 537.831517 1073.64848 0.8472 0.00045565 1.1217 0.0006033 1.9689 0.001059 537.8313717833693 99.272 0.13151 93.097 93.028 93.159 -6.1757 15 7 3 0 0 0 0.018301 1 66054 66054 65.235 2.6623 1 95918000 32946 14031 21951 22362 38749 38749 0.11460363550872898 LLEKLNPLK 9 Unmodified _LLEKLNPLK_ 0 0 0 REV__ENSG00000138617|ENST00000649807|PARP16 REV__ENSG00000138617|ENST00000649807|PARP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.3447875976562 2 534.344792 1066.67503 0.63652 0.00034012 0.31536 0.00016851 0.95188 0.00050863 534.8463663507852 47.203 0.19725 46.85 46.722 46.919 -0.3526 14 9 2 0 0 0 0.062454 1 25273 25273 41.956 2.7426 1 3838700 + 32947 20346 21952 22363 38750 38750 0.1443605244221544 LLEKLNPLK 9 Unmodified _LLEKLNPLK_ 0 0 0 REV__ENSG00000138617|ENST00000649807|PARP16 REV__ENSG00000138617|ENST00000649807|PARP16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.344792 1066.67503 0.63652 0.00034012 0.31536 0.00016851 0.95188 0.00050863 534.8463663507852 47.203 0.19725 46.85 46.722 46.919 -0.3526 -0.0020306 0.00047063 NaN 41.956 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3838700 + 32948 20346 21952 22363 0.1443605244221544 LLEKLNPLK 9 Unmodified _LLEKLNPLK_ 0 0 0 REV__ENSG00000138617|ENST00000649807|PARP16 REV__ENSG00000138617|ENST00000649807|PARP16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.344792 1066.67503 1.2464 0.00066602 -0.95787 -0.00051183 0.28856 0.00015419 534.3443161773341 46.888 0.20445 46.854 46.733 46.938 -0.033417 0.0020306 -0.00089006 NaN 41.956 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1149000 + 32949 20346 21952 22363 0.1443605244221544 LLEKPVEQNL 10 Unmodified _LLEKPVEQNL_ 0 0 0 REV__nc|ENSG00000157734|Q96L94-2|SNX22 REV__nc|ENSG00000157734|Q96L94-2|SNX22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8961181640625 3 394.895806 1181.66559 0.98984 0.00039088 0.63998 0.00025272 1.6298 0.00064361 394.8961642774659 38.279 0.29665 33.91 33.733 34.03 -4.3689 26 17 2 0 0 0 0.13008 1 22531 22531 42.312 3.6977 1 14727000 + 32950 21398 21953 22364 38751 38751 0.0820223936605089 LLEKPVEQNL 10 Unmodified _LLEKPVEQNL_ 0 0 0 REV__nc|ENSG00000157734|Q96L94-2|SNX22 REV__nc|ENSG00000157734|Q96L94-2|SNX22 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 394.895806 1181.66559 0.98984 0.00039088 0.63998 0.00025272 1.6298 0.00064361 394.8961642774659 38.279 0.29665 33.91 33.733 34.03 -4.3689 -0.11612 -0.00018121 NaN 42.312 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 14727000 + 32951 21398 21953 22364 0.0820223936605089 LLELIWNLL 9 Unmodified _LLELIWNLL_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2578430175781 3 376.23387 1125.67978 NaN NaN NaN NaN NaN NaN NaN 102.63 1 102.58 102.08 103.08 -0.046982 0 0 0 0.85798 1 57001 57001 0.23584 0 1 + 32952 22919 21954 22365 38752 38752 0.12196936584973628 LLELVDEMPL 10 Unmodified _LLELVDEMPL_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.7620544433594 3 391.214147 1170.62061 0.34003 0.00013303 1.3269 0.00051911 1.667 0.00065213 391.214479541983 58.032 0.18893 57.543 57.43 57.619 -0.48974 12 8 2 0 0 0 0.2399 1 31566 31566 1.9064 0 1 855670 + 32953 20993 21955 22366 38753 38753 0.04212672508515425 LLEMIFALL 9 Unmodified _LLEMIFALL_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7269897460938 2 531.817021 1061.61949 0.40313 0.00021439 1.0776 0.00057308 1.4807 0.00078747 531.8176288786613 88.253 0.32902 87.749 87.561 87.89 -0.50423 19 14 2 0 0 0 0.21242 1 48242 48242 5.2307 0 1 632520 + 32954 24028 21956 22367 38754 38754 0.09114502930265189 LLENDYDKI 9 Unmodified _LLENDYDKI_ 0 0 0 REV__ENSG00000134109|ENST00000256497|EDEM1 REV__ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8616638183594 3 374.860761 1121.56045 0.88553 0.00033195 1.0149 0.00038043 1.9004 0.00071238 374.86117048952053 22.717 0.34986 19.938 19.722 20.072 -2.7784 44 25 2 0 0 0 0.32235 1 12166 12166 11.518 3.0736 1 8859700 + 32955 19952 21957 22368 38755 38755 0.0045369816962193 LLENDYDKI 9 Unmodified _LLENDYDKI_ 0 0 0 REV__ENSG00000134109|ENST00000256497|EDEM1 REV__ENSG00000134109|ENST00000256497|EDEM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.860761 1121.56045 -0.4724 -0.00017709 0.56645 0.00021234 0.094041 3.5252E-05 374.860900110985 19.814 0.14186 19.814 19.746 19.888 0 -0.062149 -0.00025596 NaN 11.518 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1575600 + 32956 19952 21957 22368 0.0045369816962193 LLENDYDKI 9 Unmodified _LLENDYDKI_ 0 0 0 REV__ENSG00000134109|ENST00000256497|EDEM1 REV__ENSG00000134109|ENST00000256497|EDEM1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 374.860761 1121.56045 0.88553 0.00033195 1.0149 0.00038043 1.9004 0.00071238 374.86117048952053 22.717 0.34986 19.938 19.722 20.072 -2.7784 0.062149 0.00024832 NaN 11.518 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 8859700 + 32957 19952 21957 22368 0.0045369816962193 LLENFSSS 8 Unmodified _LLENFSSS_ 0 0 0 nc|ENSG00000186810|P49682-3|CXCR3;ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7236938476562 2 448.721633 895.428712 NaN NaN NaN NaN NaN NaN NaN 69.941 1 69.941 69.441 70.441 0 0 0 0 0.69365 1 38965 38965 28.487 5.3384 1 32958 9507 21958 22369 38756 38756 -0.023184871274679608 LLENFSSS 8 Unmodified _LLENFSSS_ 0 0 0 nc|ENSG00000186810|P49682-3|CXCR3;ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7234497070312 2 448.721633 895.428712 NaN NaN NaN NaN NaN NaN NaN 70.415 1 69.936 69.436 70.436 -0.47903 0 0 0 0.69365 1 38511 38511 28.487 5.3384 1 32959 9507 21958 22369 38757 38757 -0.023184871274679608 LLENFSSS 8 Unmodified _LLENFSSS_ 0 0 0 nc|ENSG00000186810|P49682-3|CXCR3;ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 nc|ENSG00000186810|P49682-3|CXCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7232055664062 2 448.721633 895.428712 NaN NaN NaN NaN NaN NaN NaN 70.612 1 70.135 69.635 70.635 -0.47735 0 0 0 0.69365 1 38633 38633 28.487 5.3384 1 32960 9507 21958 22369 38758 38758 -0.023184871274679608 LLENIILLLL 10 Unmodified _LLENIILLLL_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MSMS AL20221201_MKP_PDAC_01 4 389.9324340820312 3 389.596809 1165.7686 NaN NaN NaN NaN NaN NaN NaN 96.925 1 90.749 90.249 91.249 -6.1757 0 0 0 0.57148 1 64232 64232 22.775 4.4019 1 32961 10907 21959 22370 38759 38759 0.19234351824684381 LLENVAPA 8 Unmodified _LLENVAPA_ 0 0 0 nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.4668579101562 1 826.466895 825.459619 -0.20947 -0.00017312 -0.78886 -0.00065196 -0.99832 -0.00082508 826.4662241217495 70.495 0.55164 70.018 69.798 70.35 -0.47735 115 42 3 0 0 0 0.3408 1 38678 38678 50.855 6.448 1 56483000 32962 7417 21960 22371 38760 38760 0.039907109774162564 LLENVAPA 8 Unmodified _LLENVAPA_ 0 0 0 nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4661254882812 1 826.466895 825.459619 0.54714 0.00045219 -0.2039 -0.00016852 0.34324 0.00028368 826.466832312925 70.022 0.34511 70.053 69.902 70.247 0.030914 28 17 2 0 0 0 0.23628 1 38473 38473 64.236 0 1 6022600 32963 7417 21960 22371 38761 38761 0.039907109774162564 LLENVAPA 8 Unmodified _LLENVAPA_ 0 0 0 nc|ENSG00000165995|Q08289-7|CACNB2;nc|ENSG00000165995|Q08289-8|CACNB2;ENSG00000165995|ENST00000324631|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 nc|ENSG00000165995|Q08289-7|CACNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.4673461914062 1 826.466895 825.459619 0.49417 0.00040842 -0.36765 -0.00030385 0.12652 0.00010457 826.4664684523661 78.35 1.1249 72.175 71.754 72.879 -6.1757 203 66 4 0 0 0 0.17028 3 51543 51037;51159;51543 81.89 6.765 1 211680000 32964 7417 21960 22371 38762;38763;38764 38764 0.039907109774162564 LLENYYEF 8 Unmodified _LLENYYEF_ 0 0 0 nc|ENSG00000031003|Q9NYF5-3|FAM13B;nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B nc|ENSG00000031003|Q9NYF5-3|FAM13B nc|ENSG00000031003|Q9NYF5-3|FAM13B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8348999023438 2 545.758215 1089.50188 0.22968 0.00012535 3.4262 0.0018699 3.6558 0.0019952 545.7601789702719 73.372 0.29652 73.416 73.292 73.589 0.043983 16 12 2 0 0 0 8.7369 1 40395 40395 9.3474 2.9933 1 838480 32965 588 21961 22372 38765 38765 -0.03929358404866434 LLEPLLLPVGV 11 Unmodified _LLEPLLLPVGV_ 0 0 0 REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5029296875 3 388.253042 1161.7373 NaN NaN NaN NaN NaN NaN NaN 75.625 1 75.148 74.648 75.648 -0.47714 0 0 0 0.94337 1 41399 41399 0.094841 0 1 + 32966 27057 21962 22373 38766 38766 0.16289778790564924 LLEPWPVGCA 10 Unmodified _LLEPWPVGCA_ 0 0 0 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5224914550781 3 362.188044 1083.5423 NaN NaN NaN NaN NaN NaN NaN 18.684 1 18.684 18.184 19.184 0 0 0 0 0.98914 1 9306 9306 0.77653 0.078866 1 32967 16499 21963 22374 38767 38767 0.00387284713929148 LLEQEQDGVL 10 Unmodified _LLEQEQDGVL_ 0 0 0 REV__ENSG00000130720|ENST00000372338|FIBCD1 REV__ENSG00000130720|ENST00000372338|FIBCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3014526367188 2 572.298236 1142.58192 0.78233 0.00044772 2.7921 0.0015979 3.5744 0.0020456 572.8001706772816 41.265 0.47588 36.657 36.227 36.703 -4.6079 38 29 2 0 0 0 0.095098 1 24685 24685 47.749 9.5975 1 22082000 + 32968 19739 21964 22375 38768 38768 0.01633083198339591 LLEQEQDGVL 10 Unmodified _LLEQEQDGVL_ 0 0 0 REV__ENSG00000130720|ENST00000372338|FIBCD1 REV__ENSG00000130720|ENST00000372338|FIBCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2916870117188 2 572.298236 1142.58192 0.21123 0.00012089 3.5262 0.002018 3.7374 0.0021389 572.298633293382 41.339 0.10173 36.731 36.686 36.788 -4.6079 8 5 2 0 0 0 0.095098 1 24806 24806 47.749 5.6541 1 12029000 + 32969 19739 21964 22375 38769 38769 0.01633083198339591 LLEQMQLLSLF 11 Unmodified _LLEQMQLLSLF_ 0 0 0 REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.8736572265625 2 667.873056 1333.73156 1.2895 0.00086121 -0.51453 -0.00034364 0.77495 0.00051757 667.8726580845432 98.269 0.11946 92.094 92.014 92.134 -6.1757 13 7 2 0 0 0 0.35681 1 65172 65172 23.79 3.3752 1 14092000 + 32970 25583 21965 22376 38770 38770 0.07804312216603648 LLERIKWLHTE 11 Unmodified _LLERIKWLHTE_ 0 0 0 REV__ENST00000542493.5_1_12:124473982-124496186:+|nuORF REV__ENST00000542493.5_1_12:124473982-124496186:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 719.4121704101562 2 719.414269 1436.81398 NaN NaN NaN NaN NaN NaN NaN 82.773 1 82.773 82.273 83.273 0 0 0 0 0.94307 1 45914 45914 0.30703 0.30703 1 + 32971 28616 21966 22377 38771 38771 0.113049703397337 LLERKPPSK 9 Unmodified _LLERKPPSK_ 0 0 0 REV__ENST00000240922.7_1_3:113437946-113438081:-|nuORF REV__ENST00000240922.7_1_3:113437946-113438081:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7853393554688 2 534.332216 1066.64988 0.15134 8.0866E-05 0.0233 1.245E-05 0.17464 9.3315E-05 534.3319687371434 55.239 0.31836 55.17 54.98 55.298 -0.068737 34 15 3 0 0 0 0.18521 1 29950 29950 7.2892 0 1 6107600 + 32972 24842 21967 22378 38772 38772 0.11921997639660731 LLESLATCAF 10 Unmodified _LLESLATCAF_ 0 0 0 ENST00000265734.8_1_7:92242717-92242960:-|nuORF ENST00000265734.8_1_7:92242717-92242960:-|nuORF ENST00000265734.8_1_7:92242717-92242960:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.27734375 2 534.275718 1066.53688 NaN NaN NaN NaN NaN NaN NaN 87.802 1 81.627 81.127 82.127 -6.1757 0 0 0 0.61917 1 57910 57910 20.454 2.3186 1 32973 11335 21968 22379 38773 38773 0.006275611314322305 LLEVLDFL 8 Unmodified _LLEVLDFL_ 0 0 0 REV__ENST00000269221.7_1_18:21083667-21084374:+|nuORF REV__ENST00000269221.7_1_18:21083667-21084374:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 481.2841796875 2 481.283869 960.553185 NaN NaN NaN NaN NaN NaN NaN 100.2 1 94.021 93.521 94.521 -6.1757 0 0 0 0.94749 1 66940 66940 11.114 0 1 + 32974 25122 21969 22380 38774 38774 0.07133010359848413 LLEWQSHL 8 Unmodified _LLEWQSHL_ 0 0 0 REV__ENST00000518408.5_1_8:135577651-135577768:-|nuORF REV__ENST00000518408.5_1_8:135577651-135577768:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.7958374023438 2 513.274367 1024.53418 1.1739 0.00060255 -3.7962 -0.0019485 -2.6223 -0.001346 513.2744018509275 98.011 0.4148 91.835 91.627 92.042 -6.1757 31 26 2 0 0 0 8.7369 1 64974 64974 19.439 1.304 1 14559000 + 32975 28246 21970 22381 38775 38775 0.02289473788800933 LLEYRLSSI 9 Unmodified _LLEYRLSSI_ 0 0 0 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7;REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.797119140625 2 547.316232 1092.61791 1.1013 0.00060274 0.19401 0.00010619 1.2953 0.00070893 547.3155871603878 95.292 0.24261 89.116 88.988 89.23 -6.1757 20 13 2 0 0 0 0.16895 1 63176 63176 24.021 2.2739 1 32990000 + 32976 17445;20257 21971 22382 38776 38776 0.0753058516584133 LLFDRPMHV 9 Unmodified _LLFDRPMHV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5392150878906 3 376.539188 1126.59573 0.63443 0.00023889 -0.38905 -0.00014649 0.24537 9.2392E-05 376.5391250273217 52.713 0.20027 52.649 52.542 52.742 -0.063423 21 9 3 0 0 0 0.29507 1 28566 28566 17.443 9.5325 1 3084200 32977 1704 21972 22383 38777 38777 0.03750082216447481 LLFDRPMHV 9 Unmodified _LLFDRPMHV_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5400390625 3 376.539188 1126.59573 1.9575 0.00073708 0.072747 2.7392E-05 2.0303 0.00076447 376.5392409752516 58.713 0.36029 52.639 52.457 52.817 -6.0745 42 19 3 0 0 0 0.14594 1 37591 37591 28.495 15.622 1 22310000 32978 1704 21972 22383 38778 38778 0.03750082216447481 LLFDSVIHL 9 Unmodified _LLFDSVIHL_ 0 0 0 ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A ENSG00000123739|ENST00000243501|PLA2G12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8087768554688 2 528.808042 1055.60153 1.3419 0.00070958 0.26727 0.00014133 1.6091 0.00085092 528.807799930099 92.124 0.31453 92.155 91.993 92.308 0.030197 24 11 3 0 0 0 0.019979 1 51246 51246 63.563 16.642 1 5947500 32979 3729 21973 22384 38779 38779 0.07595503999755238 LLFEGEKITI 10 Unmodified _LLFEGEKITI_ 0 0 0 ENSG00000168255|ENST00000513506|POLR2J3;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENST00000504101.1_1_7:102210280-102212998:-|nuORF;nc|ENSG00000285437|Q9H1A7|POLR2J3;ENSG00000228049|ENST00000333432|POLR2J2 ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8394165039062 2 581.839539 1161.66453 0.69299 0.00040321 0.010237 5.956E-06 0.70322 0.00040916 581.8394738438627 74.736 0.3194 74.26 74.087 74.406 -0.47588 29 12 3 0 0 0 0.36296 1 40875 40875 23.79 6.6769 1 1795300 32980 7734 21974 22385 38780 38780 0.09016024997140448 LLFEGIARI 9 Unmodified _LLFEGIARI_ 0 0 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3165283203125 2 516.316035 1030.61752 0.3854 0.00019899 0.46866 0.00024198 0.85406 0.00044097 516.3156414175434 78.041 0.33681 78.094 77.94 78.276 0.052452 26 13 3 0 0 0 0.011968 1 43072 43072 74.929 10.693 1 4865900 32981 2097 21975 22386 38781 38781 0.10343210236646883 LLFEGIARI 9 Unmodified _LLFEGIARI_ 0 0 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000530314.5_1_16:70543112-70557304:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8177490234375 2 516.316035 1030.61752 1.2776 0.00065967 1.9198 0.00099122 3.1974 0.0016509 516.3157524456643 96.446 0.36771 90.27 90.104 90.472 -6.1757 39 21 3 0 0 0 0.094149 1 63878 63878 34.402 1.9481 1 24232000 32982 2097 21975 22386 38782 38782 0.10343210236646883 LLFEPLELL 9 Unmodified _LLFEPLELL_ 0 0 0 REV__nc|ENSG00000042832|P01266-2|TG REV__nc|ENSG00000042832|P01266-2|TG MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8263549804688 2 543.825901 1085.63725 0.91634 0.00049833 1.415 0.00076949 2.3313 0.0012678 543.8261996490496 102.37 0.1069 96.19 96.132 96.239 -6.1757 18 8 3 0 0 0 0.10925 1 68695 68695 32.117 3.6301 1 14436000 + 32983 17209 21976 22387 38783 38783 0.09785541456767533 LLFFCGAFY 9 Unmodified _LLFFCGAFY_ 0 0 0 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 nc|ENSG00000211750|A0A075B6N3|TRBV24-1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.830078125 2 540.764789 1079.51502 0.35404 0.00019145 -1.0528 -0.00056932 -0.69877 -0.00037787 540.7645003869201 39.895 0.21535 39.9 39.811 40.026 0.0050545 16 9 2 0 0 0 0.203 1 21243 21243 9.3474 0 1 1211200 32984 16527 21977 22388 38784 38784 -0.02155198826449123 LLFFESFEF 9 Unmodified _LLFFESFEF_ 0 0 0 REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF REV__ENST00000490310.1_1_1:149902202-149903022:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7926025390625 2 589.792058 1177.56956 0.088809 5.2379E-05 0.98439 0.00058058 1.0732 0.00063296 589.7923764725035 85.865 0.23268 85.865 85.701 85.934 0 13 9 2 0 0 0 0.58865 1 47527 47527 2.0598 0 1 214270 + 32985 27877 21978 22389 38785 38785 -0.012119084740334074 LLFFSHLIL 9 Unmodified _LLFFSHLIL_ 0 0 0 ENSG00000138675|ENST00000312465|FGF5;nc|ENSG00000138675|P12034-2|FGF5 ENSG00000138675|ENST00000312465|FGF5 ENSG00000138675|ENST00000312465|FGF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8359985351562 2 551.836603 1101.65865 0.329 0.00018155 -0.6055 -0.00033414 -0.2765 -0.00015258 551.8363250616118 60.045 0.26183 59.992 59.856 60.118 -0.053059 23 13 2 0 0 0 0.20428 1 32743 32743 24.674 0 1 6569600 32986 5086 21979 22390 38786 38786 0.11188971276146731 LLFGPDPG 8 Unmodified _LLFGPDPG_ 0 0 0 REV__ENST00000514430.5_1_4:103647823-103681914:-|nuORF REV__ENST00000514430.5_1_4:103647823-103681914:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 815.4328002929688 1 815.429781 814.422505 0.29904 0.00024385 0.64566 0.00052649 0.9447 0.00077033 815.4304585536161 74.398 0.2514 73.923 73.768 74.02 -0.47588 17 10 2 0 0 0 0.67481 1 40694 40694 19.439 3.6708 1 783580 + 32987 28195 21980 22391 38787 38787 0.007870394316682905 LLFHGMLLL 9 Oxidation (M) _LLFHGM(Oxidation (M))LLL_ LLFHGM(1)LLL LLFHGM(46)LLL 0 0 1 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8155517578125 2 536.814813 1071.61507 1.1583 0.00062177 0.40898 0.00021955 1.5672 0.00084131 536.8145023626981 81.257 0.53276 81.317 80.892 81.425 0.059929 35 20 3 0 0 0 0.047696 1 44907 44907 45.75 17.577 1 3204700 32988 8396 21981 22392 38788 38788 1427 0.08213038507346937 LLFHLKGGLI 10 Unmodified _LLFHLKGGLI_ 0 0 0 REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF REV__ENST00000264808.7_1_4:121843795-121843906:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.8510131835938 3 370.905977 1109.6961 1.863 0.00069101 -1.1644 -0.00043187 0.69868 0.00025914 370.9054996987277 35.83 0.37992 31.637 31.457 31.837 -4.1928 57 23 3 0 0 0 0.2342 1 20933 20933 10.151 1.995 1 12856000 + 32989 25079 21982 22393 38789 38789 0.14564062541739986 LLFIIAGFNTL 11 Unmodified _LLFIIAGFNTL_ 0 0 0 ENSG00000196341|ENST00000641015|OR8D1 ENSG00000196341|ENST00000641015|OR8D1 ENSG00000196341|ENST00000641015|OR8D1 MSMS AL20221201_MKP_PDAC_01 4 611.366943359375 2 611.365724 1220.7169 NaN NaN NaN NaN NaN NaN NaN 29.984 1 26.59 26.09 27.09 -3.3937 0 0 0 0.81193 1 16894 16894 11.495 0.67078 1 32990 9801 21983 22394 38790 38790 0.11536608130745662 LLFIPCLAPF 10 Unmodified _LLFIPCLAPF_ 0 0 0 ENST00000517330.1_1_5:77338566-77338725:-|nuORF ENST00000517330.1_1_5:77338566-77338725:-|nuORF ENST00000517330.1_1_5:77338566-77338725:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2852783203125 2 567.325014 1132.63547 0.46151 0.00026182 -1.9399 -0.0011005 -1.4784 -0.00083872 567.3243503934409 78.097 0.55018 78.149 77.777 78.327 0.052452 33 22 3 0 0 0 0.22327 1 43091 43091 18.135 4.2289 1 4282400 32991 14671 21984 22395 38791 38791 0.07446209167142115 LLFLHLGLLL 10 Unmodified _LLFLHLGLLL_ 0 0 0 REV__ENST00000521083.1_1_8:29935734-29940465:-|nuORF REV__ENST00000521083.1_1_8:29935734-29940465:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.29833984375 2 576.381177 1150.7478 0.95567 0.00055083 -2.1153 -0.0012192 -1.1597 -0.00066841 576.380456071371 90.103 0.28573 83.927 83.739 84.025 -6.1757 22 15 2 0 0 0 0.22316 1 59420 59420 12.532 0 1 6401500 + 32992 19939 21985 22396 38792 38792 0.17845806235663986 LLFLKKKKK 9 Unmodified _LLFLKKKKK_ 0 0 0 ENST00000344423.9_1_8:28205640-28205820:-|nuORF ENST00000344423.9_1_8:28205640-28205820:-|nuORF ENST00000344423.9_1_8:28205640-28205820:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.4102783203125 2 573.410269 1144.80599 NaN NaN NaN NaN NaN NaN NaN 105.59 1 99.416 98.916 99.916 -6.1757 0 0 0 0.8622 1 70742 70742 0 0 1 32993 12015 21986 22397 38793 38793 0.239374878809258 LLFLLLLLQ 9 Unmodified _LLFLLLLLQ_ 0 0 0 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1086.574584960938 1 1085.73328 1084.726 0.61333 0.00066591 0.82047 0.00089082 1.4338 0.0015567 1085.7331391650105 51.471 0.076118 45.822 45.771 45.848 -5.649 5 4 2 0 0 0 0.58865 1 32366 32366 2.0598 0 1 29019000 + 32994 22930 21987 22398 38794 38794 0.18703001487097026 LLFLNQQNY 9 Unmodified _LLFLNQQNY_ 0 0 0 nc|ENSG00000136122|Q6PGQ7-2|BORA nc|ENSG00000136122|Q6PGQ7-2|BORA nc|ENSG00000136122|Q6PGQ7-2|BORA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8079833984375 2 576.806031 1151.59751 NaN NaN NaN NaN NaN NaN NaN 84.625 1 84.688 84.188 85.188 0.063171 0 0 0 0.20498 1 46832 46832 30.225 3.3412 1 32995 16210 21988 22399 38795 38795 0.027774145060448063 LLFLWIQI 8 Unmodified _LLFLWIQI_ 0 0 0 ENST00000562945.2_1_16:34428496-34428757:-|nuORF ENST00000562945.2_1_16:34428496-34428757:-|nuORF ENST00000562945.2_1_16:34428496-34428757:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 523.3251342773438 2 523.325871 1044.63719 NaN NaN NaN NaN NaN NaN NaN 104.77 1 98.597 98.097 99.097 -6.1757 0 0 0 0.97444 1 70140 70140 0.79363 0 1 32996 15349 21989 22400 38796 38796 0.1166558624740901 LLFPESIRV 9 Unmodified _LLFPESIRV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3224487304688 2 537.321317 1072.62808 NaN NaN NaN NaN NaN NaN NaN 74.99 1 75.035 74.535 75.535 0.045959 0 0 0 0.18351 1 41345 41345 32.786 3.7041 1 32997 9930 21990 22401 38797 38797 0.09467192891088416 LLFPHPHQP 9 Unmodified _LLFPHPHQP_ 0 0 0 REV__ENST00000246532.5_2_19:36230484-36230780:-|nuORF REV__ENST00000246532.5_2_19:36230484-36230780:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.53515625 3 362.534543 1084.5818 -0.21594 -7.8285E-05 0.82738 0.00029995 0.61144 0.00022167 362.534779351603 21.868 0.6739 21.891 21.53 22.204 0.022896 76 33 3 0 0 0 0.61256 1 10955 10955 0.26902 0 1 3212800 + 32998 24865 21991 22402 38798 38798 0.042891727796586565 LLFPPCVSLF 10 Unmodified _LLFPPCVSLF_ 0 0 0 REV__ENST00000472558.6_1_12:6658018-6658174:-|nuORF REV__ENST00000472558.6_1_12:6658018-6658174:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 568.31494140625 2 568.314646 1134.61474 NaN NaN NaN NaN NaN NaN NaN 77.786 1 71.61 71.11 72.11 -6.1757 0 0 0 0.48706 1 50888 50888 26.884 3.7352 1 + 32999 27520 21992 22403 38799 38799 0.052816187874668685 LLFQYFFRYKL 11 Unmodified _LLFQYFFRYKL_ 0 0 0 REV__ENST00000495755.1_1_6:33235423-33235928:-|nuORF REV__ENST00000495755.1_1_6:33235423-33235928:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 769.43115234375 2 769.43193 1536.84931 NaN NaN NaN NaN NaN NaN NaN 20.152 1 17.496 16.996 17.996 -2.6564 0 0 0 0.94165 1 10721 10721 1.3295 0 1 + 33000 27952 21993 22404 38800 38800 0.10235632867556888 LLFRPDTNI 9 Unmodified _LLFRPDTNI_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3;nc|ENSG00000204624|Q9P2K9-2|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MSMS AL20221201_MKP_PDAC_01 4 544.8018188476562 2 544.808574 1087.60259 NaN NaN NaN NaN NaN NaN NaN 77.279 1 71.104 70.604 71.604 -6.1757 0 0 0 0.41346 1 50545 50545 19.257 1.122 1 33001 10311 21994 22405 38801 38801 0.06229718368649628 LLFYCRRCK 9 Unmodified _LLFYCRRCK_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.317626953125 2 601.320271 1200.62599 NaN NaN NaN NaN NaN NaN NaN 19.386 1 19.393 18.893 19.893 0.0078487 0 0 0 0.85798 1 9859 9859 0.52476 0.52476 1 33002 1438 21995 22406 38802 38802 0.033701176099611985 LLGALGPDV 9 Unmodified _LLGALGPDV_ 0 0 0 REV__PRDM2-BMP8B|1|fusion REV__PRDM2-BMP8B|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.4999389648438 1 854.498195 853.490919 -0.04584 -3.917E-05 1.2537 0.0010713 1.2079 0.0010322 854.4991481008767 65.285 0.35396 65.285 65.093 65.447 0 32 13 3 0 0 0 0.03327 2 36375 36375;36471 53.576 6.6547 1 3729700 + 33003 30080 21996 22407 38803;38804 38803 0.05831284011514981 LLGCRQGK 8 Unmodified _LLGCRQGK_ 0 0 0 REV__ENSG00000124608|ENST00000244571|AARS2 REV__ENSG00000124608|ENST00000244571|AARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 874.4955444335938 1 874.492733 873.485456 0.0012239 1.0703E-06 1.4509 0.0012688 1.4521 0.0012698 874.4948099300406 72.415 0.16566 71.939 71.854 72.02 -0.47609 10 7 2 0 0 0 0.65867 1 39614 39614 20.871 0 1 560610 + 33004 19458 21997 22408 38805 38805 0.043652819480712424 LLGELGVPG 9 Unmodified _LLGELGVPG_ 0 0 0 REV__nc|ENSG00000059573|P54886-2|ALDH18A1 REV__nc|ENSG00000059573|P54886-2|ALDH18A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7531433105469 2 427.752736 853.490919 0.019592 8.3803E-06 0.33824 0.00014468 0.35783 0.00015306 427.7531495638656 65.299 0.35765 65.299 65.117 65.475 0 22 13 2 0 0 0 0.10925 1 36401 36401 32.117 1.8922 1 1066500 + 33005 17318 21998 22409 38806 38806 0.058312840115377185 LLGEVLALV 9 Unmodified _LLGEVLALV_ 0 0 0 ENST00000220764.6_1_8:91029361-91029508:+|nuORF ENST00000220764.6_1_8:91029361-91029508:+|nuORF ENST00000220764.6_1_8:91029361-91029508:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.5902709960938 1 926.592096 925.584819 0.67611 0.00062648 -0.92941 -0.00086119 -0.25331 -0.00023471 926.5910085289203 101.88 0.094482 95.709 95.662 95.757 -6.1757 7 4 2 0 0 0 0.0094915 1 68389 68389 81.864 0 1 10310000 33006 11030 21999 22410 38807 38807 0.119050031137931 LLGFVYKL 8 Unmodified _LLGFVYKL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7978515625 2 476.796946 951.57934 1.4212 0.0006776 0.40889 0.00019496 1.8301 0.00087256 476.79706500750285 97.284 0.15998 91.108 91.01 91.17 -6.1757 13 8 2 0 0 0 0.48669 1 64507 64507 36.044 17.909 1 10545000 33007 9407 22000 22411 38808 38808 0.10161324321984466 LLGGHLKW 8 Unmodified _LLGGHLKW_ 0 0 0 REV__ENST00000597778.5_1_19:47996282-47999001:-|nuORF REV__ENST00000597778.5_1_19:47996282-47999001:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2763366699219 2 462.276712 922.538872 0.34459 0.0001593 -0.65387 -0.00030227 -0.30928 -0.00014297 462.2765870575353 48.901 0.17416 48.857 48.772 48.946 -0.04369 12 8 2 0 0 0 0.35156 1 26415 26415 49.669 2.748 1 1882800 + 33008 29229 22001 22412 38809 38809 0.0745040272222468 LLGIKTHL 8 Unmodified _LLGIKTHL_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23;CON__Q99PS0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.7931213378906 2 447.792195 893.569838 1.4412 0.00064536 -0.32801 -0.00014688 1.1132 0.00049848 447.7920578353134 49.801 0.23942 49.753 49.626 49.865 -0.048824 16 11 2 0 0 0 0.21098 1 26916 26916 68.081 17.226 1 1585700 + 33009 210 22002 22413 38810 38810 0.1187955603646742 LLGLLGRG 8 Unmodified _LLGLLGRG_ 0 0 0 ENSG00000108556|ENST00000649488|CHRNE ENSG00000108556|ENST00000649488|CHRNE ENSG00000108556|ENST00000649488|CHRNE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8855590820312 2 399.763438 797.512323 0.33537 0.00013407 0.28748 0.00011492 0.62285 0.00024899 399.7634222398535 52.169 0.3276 52.11 51.961 52.289 -0.058918 32 15 3 0 0 0 8.7369 1 28197 28197 12.532 0 1 5082700 33010 2580 22003 22414 38811 38811 0.10546713830910903 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.7653198242188 2 424.765646 847.516739 0.024681 1.0484E-05 -0.71561 -0.00030397 -0.69093 -0.00029348 424.7653169205253 65.802 0.43852 65.318 65.081 65.52 -0.48428 39 18 3 0 0 0 0.0081202 2 35941 35843;35941 93.763 57.297 1 4703100 33011 5919 22004 22415 38812;38813 38813 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.521484375 1 848.524016 847.516739 -0.48546 -0.00041193 0.069378 5.8869E-05 -0.41609 -0.00035306 848.5240817781224 65.848 0.35344 65.364 65.124 65.477 -0.48428 25 14 2 0 0 0 0.016115 3 35967 35863;35953;35967 67.413 39.24 1 3049100 33012 5919 22004 22415 38814;38815;38816 38816 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7660827636719 2 424.765646 847.516739 1.2253 0.00052047 -0.029335 -1.246E-05 1.196 0.00050801 424.76551184067074 72.03 0.54474 65.855 65.714 66.259 -6.1757 48 28 2 0 0 0 0.01018 1 47124 47124 79.935 51.448 1 18830000 33013 5919 22004 22415 38817 38817 0.08688178253805745 LLGPPPVGV 9 Unmodified _LLGPPPVGV_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1;ENST00000476727.6_1_9:130931703-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 848.5234985351562 1 848.524016 847.516739 0.87512 0.00074256 0.45532 0.00038635 1.3304 0.0011289 848.5243101341417 72.198 0.31914 66.022 65.86 66.179 -6.1757 19 15 2 0 0 0 0.0081202 2 47227 47227;47341 93.763 48.013 1 7356200 33014 5919 22004 22415 38818;38819 38818 0.08688178253805745 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.3217468261719 2 476.32112 950.627687 0.92885 0.00044243 0.34361 0.00016367 1.2725 0.0006061 476.32137366105866 66.048 0.34913 66.058 65.873 66.222 0.0095596 54 17 4 0 0 0 0.07916 1 36284 36284 37.974 5.6685 1 45957000 33015 7974 22005 22416 38820 38820 0.15039817961894641 LLGPRLVLA 9 Unmodified _LLGPRLVLA_ 0 0 0 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 ENSG00000170348|ENST00000303575|TMED10 MSMS AL20221201_MKP_PDAC_01 4 476.3211669921875 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 70.804 1 64.629 64.129 65.129 -6.1757 0 0 0 0.14 1 46279 46279 37.974 5.6685 1 33016 7974 22005 22416 38821 38821 0.15039817961894641 LLGQHPGP 8 Unmodified _LLGQHPGP_ 0 0 0 REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF REV__ENST00000321867.5_1_12:132405934-132406579:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.7291870117188 2 409.729595 817.444637 NaN NaN NaN NaN NaN NaN NaN 57.52 1 57.03 56.53 57.53 -0.48974 0 0 0 0.95607 1 31261 31261 9.3474 0.75416 1 + 33017 25516 22006 22417 38822 38822 0.02861263900092581 LLGRGAFLVR 10 Unmodified _LLGRGAFLVR_ 0 0 0 ENST00000406877.7_1_7:21956504-21985519:-|nuORF ENST00000406877.7_1_7:21956504-21985519:-|nuORF ENST00000406877.7_1_7:21956504-21985519:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.8453369140625 2 551.3482 1100.68185 0.98765 0.00054454 1.1916 0.00065698 2.1792 0.0012015 551.3479945319159 99.475 0.21066 93.299 93.144 93.354 -6.1757 23 13 3 0 0 0 0.23227 1 66161 66161 10.824 2.9138 1 26766000 33018 12938 22007 22418 38823 38823 0.1355341011346809 LLGSALALL 9 Unmodified _LLGSALALL_ 0 0 0 REV__ENSG00000100263|ENST00000216085|RHBDD3 REV__ENSG00000100263|ENST00000216085|RHBDD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.56591796875 1 870.565881 869.558604 0.8062 0.00070185 -0.67817 -0.00059039 0.12803 0.00011146 870.5647874175023 100.5 0.11862 94.327 94.27 94.389 -6.1757 10 6 2 0 0 0 0.0094915 1 67213 67213 81.864 11.149 1 17305000 + 33019 18035 22008 22419 38824 38824 0.11860733942330626 LLGSELMP 8 Unmodified _LLGSELMP_ 0 0 0 ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENST00000487395.1_1_6:102376237-102441071:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.4598999023438 1 859.459367 858.45209 0.087293 7.5025E-05 -0.86449 -0.000743 -0.7772 -0.00066797 859.4587314064579 90.336 0.36999 90.336 90.127 90.497 0 33 22 2 0 0 0 0.19755 1 49920 49920 70.865 18.171 1 1695200 33020 14203 22009 22420 38825 38825 0.017202353855054753 LLGSELMP 8 Unmodified _LLGSELMP_ 0 0 0 ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENST00000487395.1_1_6:102376237-102441071:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4584350585938 1 859.459367 858.45209 -0.12047 -0.00010354 -1.0026 -0.00086169 -1.1231 -0.00096523 859.4584156101773 90.79 0.4147 90.295 90.095 90.51 -0.49457 54 29 2 0 0 0 0.32412 1 49561 49561 52.693 5.7722 1 4195500 33021 14203 22009 22420 38826 38826 0.017202353855054753 LLGSSYLEQAL 11 Unmodified _LLGSSYLEQAL_ 0 0 0 REV__ENSG00000102547|ENST00000409308|CAB39L REV__ENSG00000102547|ENST00000409308|CAB39L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5516052246094 3 398.551928 1192.63395 NaN NaN NaN NaN NaN NaN NaN 39.087 1 38.8 38.3 39.3 -0.28687 0 0 0 0.93893 1 20604 20604 1.3296 0.11481 1 + 33022 18242 22010 22421 38827 38827 0.04534246612115567 LLGTSLTL 8 Unmodified _LLGTSLTL_ 0 0 0 ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENST00000569929.5_1_16:81888133-81917132:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2554626464844 2 409.255111 816.49567 0.35595 0.00014567 0.6881 0.00028161 1.044 0.00042728 409.25533490027914 63.274 0.39368 62.787 62.622 63.016 -0.48617 44 17 3 0 0 0 0.19755 1 34556 34556 70.865 0 1 11684000 33023 15465 22011 22422 38828 38828 0.08008168154276518 LLGTVCMLYLL 11 Unmodified _LLGTVCMLYLL_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.9027404785156 3 413.567756 1237.68144 0.1896 7.8412E-05 0.25068 0.00010367 0.44028 0.00018209 413.5678937859948 48.392 0.25463 48.348 48.261 48.516 -0.04369 23 12 3 0 0 0 0.57006 1 26113 26113 12.856 0.6812 1 5710000 33024 6377 22012 22423 38829 38829 0.07210486287090134 LLGTWQPLI 9 Unmodified _LLGTWQPLI_ 0 0 0 ENST00000216038.5_1_22:32802675-32804190:-|nuORF ENST00000216038.5_1_22:32802675-32804190:-|nuORF ENST00000216038.5_1_22:32802675-32804190:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.8507080078125 2 520.810585 1039.60662 1.4477 0.00075396 -0.13183 -6.8659E-05 1.3158 0.0006853 520.8108143787755 95.86 0.16344 89.684 89.584 89.748 -6.1757 14 9 2 0 0 0 0.19613 1 63545 63545 12.532 0 1 8619000 33025 11000 22013 22424 38830 38830 0.08839807862386806 LLHAAMRG 8 Unmodified _LLHAAMRG_ 0 0 0 REV__ENST00000406644.7_1_22:41792013-41792211:+|nuORF REV__ENST00000406644.7_1_22:41792013-41792211:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8826599121094 2 434.744722 867.474891 0.2155 9.3685E-05 -1.0165 -0.00044191 -0.80099 -0.00034823 434.74428793740157 72.517 0.17188 72.558 72.399 72.571 0.041725 10 7 2 0 0 0 8.7369 1 39924 39924 0.79363 0 1 749600 + 33026 26658 22014 22425 38831 38831 0.03585299293627031 LLHAQLQTCD 10 Unmodified _LLHAQLQTCD_ 0 0 0 REV__ENSG00000256797|ENST00000535540|KLRF2 REV__ENSG00000256797|ENST00000535540|KLRF2 MSMS AL20221201_MKP_PDAC_01 4 381.1954345703125 3 381.193858 1140.55974 NaN NaN NaN NaN NaN NaN NaN 14.673 1 12.17 11.67 12.67 -2.5029 0 0 0 0.99388 1 7469 7469 0.56317 0.15491 1 + 33027 24558 22015 22426 38832 38832 -0.004914197510970553 LLHCETTL 8 Unmodified _LLHCETTL_ 0 0 0 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2407531738281 2 465.241678 928.468803 NaN NaN NaN NaN NaN NaN NaN 38.966 1 38.679 38.179 39.179 -0.28687 0 0 0 0.9706 1 20537 20537 6.3541 0 1 + 33028 19560 22016 22427 38833 38833 0.001707362714341798 LLHDKVLCI 9 Unmodified _LLHDKVLCI_ 0 0 0 REV__ENST00000270861.9_1_4:128802164-128803079:+|nuORF REV__ENST00000270861.9_1_4:128802164-128803079:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.3104858398438 2 527.309895 1052.60524 NaN NaN NaN NaN NaN NaN NaN 24.956 1 24.956 24.456 25.456 0 0 0 0 0.7453 1 12773 12773 7.9102 0 1 + 33029 25134 22017 22428 38834 38834 0.08103850501947818 LLHDVQDQI 9 Unmodified _LLHDVQDQI_ 0 0 0 REV__nc|ENSG00000108469|O94762-2|RECQL5 REV__nc|ENSG00000108469|O94762-2|RECQL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.788330078125 2 540.787838 1079.56112 0.21067 0.00011393 -0.14821 -8.0147E-05 0.062464 3.378E-05 540.7882423749402 39.845 0.32919 39.845 39.681 40.01 0 58 16 5 0 0 0 0.2143 1 21348 21348 21.747 2.4897 1 22912000 + 33030 18608 22018 22429 38835 38835 0.024525376093151863 LLHELLTHV 9 Unmodified _LLHELLTHV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.8818664550781 3 358.88172 1073.62333 0.35945 0.000129 0.40817 0.00014648 0.76762 0.00027548 358.88180770989857 52.88 0.21561 52.817 52.704 52.919 -0.063423 20 10 3 0 0 0 0.091924 1 28663 28663 34.932 18.783 1 2733900 33031 3064 22019 22430 38836 38836 0.0894630874829545 LLHFGVIG 8 Unmodified _LLHFGVIG_ 0 0 0 ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2588195800781 2 428.257988 854.501424 1.116 0.00047793 -0.091655 -3.9252E-05 1.0243 0.00043868 428.25817533305116 94.894 0.22877 88.718 88.625 88.854 -6.1757 25 12 3 0 0 0 0.70131 1 62855 62855 17.087 2.5049 1 6698900 33032 10628 22020 22431 38837 38837 0.06835311456609361 LLHGLHTRCF 10 Unmodified _LLHGLHTRCF_ 0 0 0 REV__ENSG00000169251|ENST00000351193|NMD3 REV__ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8193359375 2 598.821492 1195.62843 0.5018 0.00030049 -2.376 -0.0014228 -1.8742 -0.0011223 599.3215805275729 88.959 0.24438 88.455 88.298 88.543 -0.50423 17 10 2 0 0 0 0.70951 1 48611 48611 1.8442 0 1 573180 + 33033 22389 22021 22432 38838 38838 0.03844289339281204 LLHGLHTRCF 10 Unmodified _LLHGLHTRCF_ 0 0 0 REV__ENSG00000169251|ENST00000351193|NMD3 REV__ENSG00000169251|ENST00000351193|NMD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.821492 1195.62843 0.5018 0.00030049 -2.376 -0.0014228 -1.8742 -0.0011223 599.3215805275729 88.959 0.24438 88.455 88.298 88.543 -0.50423 0 0 NaN 1.8442 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 573180 + 33034 22389 22021 22432 0.03844289339281204 LLHGLLLHR 9 Unmodified _LLHGLLLHR_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8966979980469 3 357.897704 1070.67128 1.8231 0.00065247 -0.91272 -0.00032666 0.91035 0.00032581 357.89730720660253 20.408 0.48318 17.715 17.494 17.977 -2.693 98 28 5 0 0 0 0.49272 1 10985 10985 4.897 0 1 163700000 33035 8841 22022 22433 38839 38839 0.13877427459033242 LLHGPEEGRR 10 Unmodified _LLHGPEEGRR_ 0 0 0 ENST00000513185.1_1_5:98109622-98109781:+|nuORF ENST00000513185.1_1_5:98109622-98109781:+|nuORF ENST00000513185.1_1_5:98109622-98109781:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3192138671875 2 582.317628 1162.6207 0.78934 0.00045965 1.4713 0.00085679 2.2607 0.0013164 582.3177917242651 62.593 0.28371 62.571 62.413 62.697 -0.021614 37 14 3 0 0 0 0.62665 1 34222 34222 10.8 2.0541 1 8731800 33036 14635 22023 22434 38840 38840 0.04589853343350114 LLHHLFTMN 9 Unmodified _LLHHLFTMN_ 0 0 0 REV__ENST00000396060.6_1_15:59931232-59931334:-|nuORF REV__ENST00000396060.6_1_15:59931232-59931334:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.7926025390625 2 563.297319 1124.58008 1.6234 0.00091444 3.814 0.0021484 5.4374 0.0030629 563.2984749444274 101 0.089531 94.823 94.78 94.869 -6.1757 8 4 3 0 0 0 0.20139 1 67657 67657 6.7232 1.4925 1 15771000 + 33037 26495 22024 22435 38841 38841 0.022777956994104898 LLHIVRKLSA 10 Unmodified _LLHIVRKLSA_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99116853-99131081:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8790893554688 2 575.376958 1148.73936 1.6293 0.00093748 -0.93034 -0.0005353 0.699 0.00040219 575.3768716331915 106.4 1.1421 100.23 99.784 100.93 -6.1757 344 195 3 0 0 0 0.72196 1 71298 71298 0.45834 0 1 9179300 33038 739 22025 22436 38842 38842 0.17094252319043335 LLHIYDII 8 Unmodified _LLHIYDII_ 0 0 0 ENST00000284425.6_1_17:67087362-67092889:-|nuORF ENST00000284425.6_1_17:67087362-67092889:-|nuORF ENST00000284425.6_1_17:67087362-67092889:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2972717285156 2 500.29731 998.580068 1.2447 0.00062273 -1.7939 -0.0008975 -0.54921 -0.00027477 500.29635688965874 54.376 0.41161 48.511 48.302 48.713 -5.8653 41 25 2 0 0 0 0.50586 1 34520 34520 34.187 0 1 37708000 33039 11435 22026 22437 38843 38843 0.08072118971040254 LLHKRIGF 8 Unmodified _LLHKRIGF_ 0 0 0 REV__ENSG00000180772|ENST00000371906|AGTR2 REV__ENSG00000180772|ENST00000371906|AGTR2 MSMS AL20221201_MKP_PDAC_01 4 492.3112487792969 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 109.07 1 102.89 102.39 103.39 -6.1757 0 0 0 0.97444 1 72861 72861 0.69038 0 1 + 33040 23167 22027 22438 38844 38844 0.11562067021952771 LLHLMKPQL 9 Unmodified _LLHLMKPQL_ 0 0 0 ENST00000472129.3_1_17:57733314-57733365:+|nuORF ENST00000472129.3_1_17:57733314-57733365:+|nuORF ENST00000472129.3_1_17:57733314-57733365:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.8931274414062 3 364.89145 1091.65252 NaN NaN NaN NaN NaN NaN NaN 38.501 1 34.132 33.632 34.632 -4.3689 0 0 0 0.81228 1 22720 22720 5.7319 0.43497 1 33041 13895 22028 22439 38845 38845 0.11036129772946879 LLHMGEYLL 9 Unmodified _LLHMGEYLL_ 0 0 0 REV__ENST00000515237.1_1_4:530517-533155:+|nuORF;REV__nc|ENSG00000174227|Q5H8A4-3|PIGG REV__nc|ENSG00000174227|Q5H8A4-3|PIGG MSMS AL20221201_MKP_PDAC_01 4 544.7921752929688 2 544.794078 1087.5736 NaN NaN NaN NaN NaN NaN NaN 82.029 1 75.853 75.353 76.353 -6.1757 0 0 0 0.20498 1 53868 53868 30.225 1.738 1 + 33042 22775;28211 22029 22440 38846 38846 0.03331857748025868 LLHNNDVRFE 10 Unmodified _LLHNNDVRFE_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5509643554688 3 419.550921 1255.63093 NaN NaN NaN NaN NaN NaN NaN 16.924 1 16.924 16.424 17.424 0 0 0 0 0.96271 1 8298 8298 4.7159 1.3963 1 + 33043 19067 22030 22441 38847 38847 0.013344162779503677 LLHQFSLFI 9 Unmodified _LLHQFSLFI_ 0 0 0 REV__nc|ENSG00000090534|P40225-3|THPO REV__nc|ENSG00000090534|P40225-3|THPO MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.32373046875 2 559.32386 1116.63317 1.4292 0.0007994 0.96546 0.00054001 2.3947 0.0013394 559.3246181382334 95.927 0.24731 89.752 89.66 89.907 -6.1757 21 14 2 0 0 0 0.05447 1 63551 63551 43.858 0 1 7626600 + 33044 17861 22031 22442 38848 38848 0.07951496753685205 LLHRRRQHL 9 Unmodified _LLHRRRQHL_ 0 0 0 ENSG00000171161|ENST00000306562|ZNF672 ENSG00000171161|ENST00000306562|ZNF672 ENSG00000171161|ENST00000306562|ZNF672 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.255615234375 3 410.254773 1227.74249 0.29712 0.0001219 1.3018 0.00053406 1.5989 0.00065595 410.2552313198479 58.867 0.39161 58.376 58.212 58.604 -0.49079 38 18 3 0 0 0 0.46501 1 32086 32086 9.3831 0.63772 1 8836300 33045 8071 22032 22443 38849 38849 0.13772940216404095 LLHRTAPLL 9 Unmodified _LLHRTAPLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MSMS AL20221201_MKP_PDAC_01 4 517.328125 2 517.329476 1032.6444 NaN NaN NaN NaN NaN NaN NaN 96.574 1 90.399 89.899 90.899 -6.1757 0 0 0 0.18911 1 64002 64002 32.117 7.4431 1 33046 583 22033 22444 38850 38850 0.129383188478414 LLHRTRLQI 9 Unmodified _LLHRTRLQI_ 0 0 0 REV__ENST00000367590.8_1_1:180601401-180756909:+|nuORF REV__ENST00000367590.8_1_1:180601401-180756909:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.912353515625 3 383.912013 1148.71421 -0.0097163 -3.7302E-06 1.0339 0.00039692 1.0242 0.00039319 383.9122790917042 34.887 0.34825 34.915 34.774 35.122 0.027401 30 15 2 0 0 0 0.43463 1 18480 18480 10.8 0 1 34209000 + 33047 25991 22034 22445 38851 38851 0.14580197516465887 LLHRVFFRLMR 11 Unmodified _LLHRVFFRLMR_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 744.9452514648438 2 744.44264 1486.87073 -0.0045241 -3.3679E-06 2.0129 0.0014985 2.0084 0.0014951 744.4440992054568 95.822 0.34035 95.822 95.687 96.028 0 30 22 2 0 0 0 0.68427 1 52948 52948 5.7319 0.43497 1 501760 + 33048 24391 22035 22446 38852 38852 0.14676739415267548 LLHRVFFRLMR 11 Unmodified _LLHRVFFRLMR_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 744.9452514648438 2 744.44264 1486.87073 0.16285 0.00012123 0.77576 0.00057751 0.93861 0.00069874 744.4435322263124 96.238 0.19482 95.934 95.833 96.028 -0.30473 23 10 3 0 0 0 0.71036 1 52539 52539 3.2813 0.28607 1 469460 + 33049 24391 22035 22446 38853 38853 0.14676739415267548 LLHRVFFRLMR 11 Unmodified _LLHRVFFRLMR_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 744.44264 1486.87073 -0.0045241 -3.3679E-06 2.0129 0.0014985 2.0084 0.0014951 744.4440992054568 95.822 0.34035 95.822 95.687 96.028 0 -0.055649 0.00064397 NaN 5.7319 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 501760 + 33050 24391 22035 22446 0.14676739415267548 LLHRVFFRLMR 11 Unmodified _LLHRVFFRLMR_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 744.44264 1486.87073 0.16285 0.00012123 0.77576 0.00057751 0.93861 0.00069874 744.4435322263124 96.238 0.19482 95.934 95.833 96.028 -0.30473 0.055649 -0.001198 NaN 5.7319 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 469460 + 33051 24391 22035 22446 0.14676739415267548 LLHTSHLFF 9 Unmodified _LLHTSHLFF_ 0 0 0 REV__ENST00000396981.6_1_17:4175707-4175803:-|nuORF REV__ENST00000396981.6_1_17:4175707-4175803:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.338134765625 2 557.805834 1113.59712 1.4996 0.0008365 1.2603 0.000703 2.7599 0.0015395 557.8069308317528 98.108 0.10669 91.932 91.862 91.968 -6.1757 11 6 2 0 0 0 0.062661 1 65045 65045 46.921 12.519 1 15798000 + 33052 26520 22036 22447 38854 38854 0.044860395768409944 LLHVPIPQYW 10 Unmodified _LLHVPIPQYW_ 0 0 0 REV__ENSG00000204740|ENST00000454679|MALRD1 REV__ENSG00000204740|ENST00000454679|MALRD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 632.8594360351562 2 633.355691 1264.69683 0.80978 0.00051288 4.4387 0.0028113 5.2485 0.0033242 633.3579298324655 102.3 0.095856 96.122 96.052 96.148 -6.1757 6 4 2 0 0 0 0.22327 1 68663 68663 12.532 0 1 5123700 + 33053 24200 22037 22448 38855 38855 0.07506857190787741 LLIAKLGG 8 Unmodified _LLIAKLGG_ 0 0 0 REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.7698974609375 2 392.768189 783.521825 NaN NaN NaN NaN NaN NaN NaN 54.35 1 54.283 53.783 54.783 -0.066936 0 0 0 0.97444 1 29513 29513 0.69038 0 1 + 33054 25912 22038 22449 38856 38856 0.12140482116433304 LLIDDKGTIKL 11 Unmodified _LLIDDKGTIKL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2550354003906 3 410.255223 1227.74384 0.29712 0.0001219 0.20657 8.4745E-05 0.50369 0.00020664 410.2552313198479 58.867 0.39161 58.376 58.212 58.604 -0.49079 38 18 3 0 0 0 0.16638 1 31979 31979 34.79 13.919 1 8836300 33055 7969 22039 22450 38857 38857 0.13907671951278644 LLIDDKGTIKL 11 Unmodified _LLIDDKGTIKL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2552185058594 3 410.255223 1227.74384 0.42508 0.00017439 0.16065 6.5909E-05 0.58573 0.0002403 410.2552188977298 58.448 0.25057 58.387 58.254 58.505 -0.060719 31 12 3 0 0 0 0.49156 1 31800 31800 16.838 4.6108 1 6175900 33056 7969 22039 22450 38858 38858 0.13907671951278644 LLIDDKGTIKL 11 Unmodified _LLIDDKGTIKL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2554626464844 3 410.255223 1227.74384 1.5634 0.00064137 -0.1126 -4.6193E-05 1.4508 0.00059518 410.25506114338594 64.405 0.4521 58.229 58.017 58.47 -6.1757 38 24 2 0 0 0 0.19143 1 41720 41720 32.518 14.946 1 16350000 33057 7969 22039 22450 38859 38859 0.13907671951278644 LLIDMFLFPH 10 Unmodified _LLIDMFLFPH_ 0 0 0 REV__ENST00000485726.1_1_7:103844615-103848288:-|nuORF REV__ENST00000485726.1_1_7:103844615-103848288:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.6500244140625 3 415.89486 1244.66275 3.9797 0.0016551 0.49849 0.00020732 4.4782 0.0018625 415.89490343745786 98.81 0.2254 98.782 98.637 98.863 -0.028282 16 7 3 0 0 0 0.23986 1 54816 54816 2.086 0 1 2308500 + 33058 27782 22040 22451 38860 38860 0.05020692707557828 LLIDSLLYN 9 Unmodified _LLIDSLLYN_ 0 0 0 ENST00000553902.5_1_14:23375339-23380574:-|nuORF;ENST00000556687.5_1_14:23375339-23380602:-|nuORF;ENST00000554955.5_1_14:23375339-23380602:-|nuORF ENST00000553902.5_1_14:23375339-23380574:-|nuORF ENST00000553902.5_1_14:23375339-23380574:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.7869262695312 2 532.305332 1062.59611 0.71567 0.00038096 2.6934 0.0014337 3.4091 0.0018147 532.8069526214596 99.546 0.21808 93.371 93.29 93.508 -6.1757 23 13 3 0 0 0 0.17275 1 66268 66268 6.7232 0 1 16797000 33059 15199 22041 22452 38861 38861 0.0673178041729443 LLIDSQIELVI 11 Unmodified _LLIDSQIELVI_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.380615234375 2 628.379029 1254.7435 0.10454 6.569E-05 1.1192 0.00070326 1.2237 0.00076895 628.3797188661813 65.234 0.27741 65.234 65.093 65.37 0 25 10 3 0 0 0 0.08701 1 36367 36367 43.982 6.9072 1 3743600 + 33060 18458 22042 22453 38862 38862 0.1263225223142399 LLIDSQIELVI 11 Unmodified _LLIDSQIELVI_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 628.379029 1254.7435 0.10454 6.569E-05 1.1192 0.00070326 1.2237 0.00076895 628.3797188661813 65.234 0.27741 65.234 65.093 65.37 0 -0.0016788 0.00011851 NaN 43.982 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3743600 + 33061 18458 22042 22453 0.1263225223142399 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.57763671875 1 971.577174 970.569897 0.15258 0.00014824 0.3517 0.00034171 0.50428 0.00048995 971.5771621501941 78.914 0.2349 78.914 78.786 79.021 0 16 10 2 0 0 0 0.12424 1 43821 43821 30.637 7.9003 1 587920 33062 10630 22043 22454 38863 38863 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2924499511719 2 486.292225 970.569897 0.24601 0.00011963 0.33046 0.0001607 0.57647 0.00028033 486.2923377138319 78.93 0.42599 78.93 78.716 79.142 0 60 19 4 0 0 0 0.042911 1 43885 43885 48.346 2.6462 1 7268600 33063 10630 22043 22454 38864 38864 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2921752929688 2 486.292225 970.569897 0.96272 0.00046816 -0.49309 -0.00023979 0.46962 0.00022837 486.2919223023982 79.42 0.62939 78.93 78.682 79.312 -0.48933 91 27 5 0 0 0 0.042911 3 43515 43417;43515;43615 48.346 10.082 1 43820000 33064 10630 22043 22454 38865;38866;38867 38866 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2925720214844 2 486.292225 970.569897 0.59578 0.00028972 -0.034529 -1.6791E-05 0.56125 0.00027293 486.2921485942898 78.858 0.37544 78.913 78.754 79.13 0.054977 33 14 3 0 0 0 0.34999 1 43653 43653 14.838 4.0143 1 8465000 33065 10630 22043 22454 38868 38868 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2925720214844 2 486.292225 970.569897 1.0208 0.00049639 0.22435 0.0001091 1.2451 0.00060549 486.29218332755147 87.411 0.7771 81.235 80.858 81.636 -6.1757 129 42 4 0 0 0 0.015445 3 57692 57565;57692;57817 68.081 14.303 1 291050000 33066 10630 22043 22454 38869;38870;38871 38870 0.08343511245811897 LLIENVASL 9 Unmodified _LLIENVASL_ 0 0 0 nc|ENSG00000233276|P07203-2|GPX1;ENST00000419783.1_2_3:49395567-49395990:-|nuORF;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF nc|ENSG00000233276|P07203-2|GPX1 nc|ENSG00000233276|P07203-2|GPX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 971.5774536132812 1 971.577174 970.569897 0.71327 0.00069299 0.67014 0.0006511 1.3834 0.0013441 971.5775006681489 87.418 0.51326 81.243 80.963 81.476 -6.1757 55 27 3 0 0 0 0.0088174 1 57624 57624 103.75 21.858 1 40326000 33067 10630 22043 22454 38872 38872 0.08343511245811897 LLIEPFNP 8 Unmodified _LLIEPFNP_ 0 0 0 REV__nc|ENSG00000137474|Q13402-5|MYO7A REV__nc|ENSG00000137474|Q13402-5|MYO7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7687377929688 2 471.768386 941.522219 1.0469 0.00049389 -0.8987 -0.00042398 0.1482 6.9915E-05 471.7678398878491 79.767 0.37867 79.278 79.075 79.454 -0.48932 26 16 2 0 0 0 0.58902 1 43760 43760 26.884 0 1 1485800 + 33068 20241 22044 22455 38873 38873 0.04911857045613033 LLIILYVKL 9 Unmodified _LLIILYVKL_ 0 0 0 ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000206531|Q6Q8B3|CD200R1L ENSG00000206531|ENST00000488794|CD200R1L ENSG00000206531|ENST00000488794|CD200R1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2536926269531 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 45.887 1 45.859 45.359 46.359 -0.028011 0 0 0 0.85261 1 24672 24672 1.1933 0 1 33069 10401 22045 22456 38874 38874 0.20175288004134018 LLIILYVKL 9 Unmodified _LLIILYVKL_ 0 0 0 ENSG00000206531|ENST00000488794|CD200R1L;nc|ENSG00000206531|Q6Q8B3|CD200R1L ENSG00000206531|ENST00000488794|CD200R1L ENSG00000206531|ENST00000488794|CD200R1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.25341796875 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 64.373 1 64.362 63.862 64.862 -0.010529 0 0 0 0.81228 1 35243 35243 5.7319 0 1 33070 10401 22045 22456 38875 38875 0.20175288004134018 LLIIPCAET 9 Unmodified _LLIIPCAET_ 0 0 0 REV__ENST00000472475.1_3_3:121449814-121467982:-|nuORF REV__ENST00000472475.1_3_3:121449814-121467982:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7752380371094 2 486.775354 971.536154 0.57137 0.00027813 -1.3523 -0.00065826 -0.78092 -0.00038013 486.77477506187984 90.796 0.45871 90.301 90.051 90.51 -0.49458 62 31 3 0 0 0 0.30562 1 49563 49563 16.942 0 1 5127800 + 33071 27517 22046 22457 38876 38876 0.049247664824065396 LLIKKLPRVL 10 Unmodified _LLIKKLPRVL_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2901916503906 3 398.28831 1191.8431 NaN NaN NaN NaN NaN NaN NaN 101.38 1 101.33 100.83 101.83 -0.04216 0 0 0 1.0047 1 56320 56320 0.15932 0 1 33072 3033 22047 22458 38877 38877 0.25485159426716564 LLILHMFL 8 Unmodified _LLILHMFL_ 0 0 0 REV__ENSG00000182489|ENST00000372956|XKRX REV__ENSG00000182489|ENST00000372956|XKRX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.3075256347656 2 500.306624 998.598695 NaN NaN NaN NaN NaN NaN NaN 56.461 1 56.461 55.961 56.961 0 0 0 0 0.78208 1 31403 31403 24.21 0 1 + 33073 23273 22048 22459 38878 38878 0.09933957341263522 LLILIHNKIC 10 Unmodified _LLILIHNKIC_ 0 0 0 REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|5|2|sense REV__Tigger14a_dup108|chr2:69248839-69249084:-|4.085701530680961|0.0078075927274636|9.03|179.0|5|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.9142761230469 3 393.914255 1178.72094 0.96735 0.00038105 -1.0051 -0.00039592 -0.037743 -1.4868E-05 393.9141526136357 71.06 0.7013 71.096 70.915 71.617 0.035515 50 31 2 0 0 0 0.7191 1 39140 39140 0.77653 0.078866 1 1712600 + 33074 30119 22049 22460 38879 38879 0.13872374352808947 LLILKMSLS 9 Unmodified _LLILKMSLS_ 0 0 0 REV__ENST00000357867.8_1_2:216269318-216269372:-|nuORF REV__ENST00000357867.8_1_2:216269318-216269372:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.8783264160156 2 509.322471 1016.63039 0.88441 0.00045045 0.23888 0.00012166 1.1233 0.00057212 509.3226116885403 83.025 0.23977 83.087 82.941 83.181 0.061996 17 8 3 0 0 0 0.203 1 45860 45860 9.3474 0 1 2233700 + 33075 25860 22050 22461 38880 38880 0.12273905304539312 LLILPVSPHF 10 Unmodified _LLILPVSPHF_ 0 0 0 ENST00000575312.1_1_17:79669706-79669922:-|nuORF ENST00000575312.1_1_17:79669706-79669922:-|nuORF ENST00000575312.1_1_17:79669706-79669922:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5113220214844 3 379.233982 1134.68012 -0.61393 -0.00023282 -2.3727 -0.00089981 -2.9866 -0.0011326 379.23313468155635 26.941 0.14675 26.941 26.846 26.992 0 11 6 2 0 0 0 0.2399 1 13824 13824 1.9064 0.1641 1 1265200 33076 15515 22051 22462 38881 38881 0.11816356304848341 LLILSKSNA 9 Unmodified _LLILSKSNA_ 0 0 0 ENSG00000118420|ENST00000369747|UBE3D;ENST00000237186.10_1_6:83602743-83775466:-|nuORF ENSG00000118420|ENST00000369747|UBE3D ENSG00000118420|ENST00000369747|UBE3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7977294921875 2 479.800217 957.585882 -0.12041 -5.7773E-05 -0.81433 -0.00039072 -0.93474 -0.00044849 479.7989937803533 84.352 0.089996 84.416 84.374 84.464 0.063171 6 3 2 0 0 0 0.55775 1 46693 46693 3.9444 0 1 11107000 33077 3370 22052 22463 38882 38882 0.1053921748269886 LLILVLLLLRV 11 Unmodified _LLILVLLLLRV_ 0 0 0 REV__ENSG00000129538|ENST00000397967|RNASE1 REV__ENSG00000129538|ENST00000397967|RNASE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.6470336914062 3 426.647615 1276.92102 NaN NaN NaN NaN NaN NaN NaN 91.703 1 91.739 91.239 92.239 0.036499 0 0 0 0.94148 1 51003 51003 1.4551 0.94916 1 + 33078 19672 22053 22464 38883 38883 0.29363172292073614 LLINGTLK 8 Unmodified _LLINGTLK_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2854919433594 2 436.284203 870.553853 0.88301 0.00038524 0.52372 0.00022849 1.4067 0.00061374 436.28446744614524 47.469 0.21874 47.431 47.299 47.518 -0.038643 15 9 2 0 0 0 0.40602 1 25569 25569 43.858 0 1 2319700 33079 1298 22054 22465 38884 38884 0.11339849799571766 LLIPFLRIH 9 Unmodified _LLIPFLRIH_ 0 0 0 REV__ENST00000393409.2_1_3:126755887-126756190:+|nuORF REV__ENST00000393409.2_1_3:126755887-126756190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5788269042969 3 374.577972 1120.71209 0.71615 0.00026826 1.4577 0.00054602 2.1738 0.00081428 374.5784550983222 42.588 0.46427 42.588 42.445 42.909 0 55 23 4 0 0 0 0.57331 1 23162 23162 2.9952 1.8019 1 6373300 + 33080 26419 22055 22466 38885 38885 0.15655768778628953 LLIPGLATA 9 Unmodified _LLIPGLATA_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 868.5494995117188 1 868.550231 867.542954 1.4582 0.0012665 0.80127 0.00069595 2.2595 0.0019625 868.551030309578 82.452 0.29671 82.514 82.394 82.691 0.062004 17 10 2 0 0 0 0.0088154 1 45606 45606 106.85 32.449 1 3481700 33081 3843 22056 22467 38886 38886 0.10388447425282266 LLIPGLATA 9 Unmodified _LLIPGLATA_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 868.5512084960938 1 868.550231 867.542954 0.66549 0.00057801 0.19854 0.00017244 0.86404 0.00075046 868.5499554537693 90.341 0.43819 84.166 83.951 84.389 -6.1757 41 25 2 0 0 0 0.0081063 2 59727 59596;59727 106.85 37.342 1 12796000 33082 3843 22056 22467 38887;38888 38888 0.10388447425282266 LLIPGLATA 9 Unmodified _LLIPGLATA_ 0 0 0 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 ENSG00000125356|ENST00000371437|NDUFA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7791137695312 2 434.778754 867.542954 0.92864 0.00040375 0.38841 0.00016887 1.3171 0.00057263 434.77872846124336 90.433 0.36722 84.258 83.988 84.355 -6.1757 40 21 3 0 0 0 0.027803 2 59613 59613;59748 56.541 14.447 1 14015000 33083 3843 22056 22467 38889;38890 38889 0.10388447425282266 LLIPRYTHF 9 Unmodified _LLIPRYTHF_ 0 0 0 REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2242431640625 3 387.225598 1158.65496 -0.075397 -2.9196E-05 -1.9489 -0.00075466 -2.0243 -0.00078386 387.22468076442107 33.184 0.29781 33.213 32.998 33.295 0.028934 34 12 4 0 0 0 0.42049 1 17422 17422 11.495 4.8643 1 3377200 + 33084 24835 22057 22468 38891 38891 0.08198301502261529 LLIPRYTHF 9 Unmodified _LLIPRYTHF_ 0 0 0 REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF REV__ENST00000238156.7_1_12:124421304-124421517:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 387.225598 1158.65496 -0.075397 -2.9196E-05 -1.9489 -0.00075466 -2.0243 -0.00078386 387.22468076442107 33.184 0.29781 33.213 32.998 33.295 0.028934 -0.01688 0.0019633 NaN 11.495 34 12 4 NaN NaN NaN NaN 0 NaN NaN 0 3377200 + 33085 24835 22057 22468 0.08198301502261529 LLIPVKLIV 9 Unmodified _LLIPVKLIV_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1008.060974121094 1 1007.72272 1006.71544 0.54772 0.00055195 3.5601 0.0035876 4.1079 0.0041396 1008.7280571348853 29.859 0.11351 29.779 29.728 29.841 -0.080431 10 4 3 0 0 0 0.2191 1 15479 15479 0 0 1 4522900 33086 16013 22058 22469 38892 38892 0.2123501883266954 LLIRRQQRAI 10 Unmodified _LLIRRQQRAI_ 0 0 0 ENST00000444521.6_1_1:2520880-2521423:+|nuORF ENST00000444521.6_1_1:2520880-2521423:+|nuORF ENST00000444521.6_1_1:2520880-2521423:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2760314941406 3 422.942084 1265.80442 NaN NaN NaN NaN NaN NaN NaN 105.08 1 98.904 98.404 99.404 -6.1757 0 0 0 1.0019 1 70372 70372 0.15932 0 1 33087 13439 22059 22470 38893 38893 0.18215246844897592 LLISLDVSL 9 Unmodified _LLISLDVSL_ 0 0 0 ENST00000318787.13_1_6:125597060-125597213:-|nuORF ENST00000318787.13_1_6:125597060-125597213:-|nuORF ENST00000318787.13_1_6:125597060-125597213:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.8040466308594 2 486.802426 971.590298 1.1966 0.00058249 1.7144 0.00083455 2.9109 0.001417 486.8031962352835 81.388 0.16112 75.212 75.182 75.343 -6.1757 12 8 2 0 0 0 0.095405 1 53463 53463 34.102 5.6156 1 7340000 33088 11752 22060 22471 38894 38894 0.10336681905619116 LLITHEPL 8 Unmodified _LLITHEPL_ 0 0 0 REV__ENST00000435688.1_1_22:42539301-42540546:-|nuORF REV__ENST00000435688.1_1_22:42539301-42540546:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2816162109375 2 468.28166 934.548768 NaN NaN NaN NaN NaN NaN NaN 79.442 1 78.953 78.453 79.453 -0.48932 0 0 0 0.95607 1 43511 43511 9.3474 0 1 + 33089 27022 22061 22472 38895 38895 0.07887545936932838 LLITTSELML 10 Unmodified _LLITTSELML_ 0 0 0 nc|ENSG00000178917|Q6ZMS4|ZNF852 nc|ENSG00000178917|Q6ZMS4|ZNF852 nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5549011230469 3 378.554392 1132.64135 1.2601 0.00047702 0.017783 6.732E-06 1.2779 0.00048376 378.55450571689397 38.233 0.64103 33.864 33.616 34.257 -4.3689 160 39 6 0 0 0 0.31022 1 22404 22404 28.495 6.9044 1 1553299999.9999998 33090 16415 22062 22473 38896 38896 0.08033262888170611 LLITVMWPI 9 Unmodified _LLITVMWPI_ 0 0 0 REV__ENST00000356838.7_1_8:133764190-133764235:-|nuORF REV__ENST00000356838.7_1_8:133764190-133764235:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3218994140625 2 543.325014 1084.63547 0.27417 0.00014897 -3.8441 -0.0020886 -3.5699 -0.0019396 543.3230016750188 74.56 0.29221 74.606 74.435 74.728 0.045959 25 12 3 0 0 0 0.14602 1 41092 41092 28.487 2.1456 1 3234800 + 33091 25830 22063 22474 38897 38897 0.09654209167160843 LLIVFPEVF 9 Unmodified _LLIVFPEVF_ 0 0 0 REV__ENSG00000196296|ENST00000395503|ATP2A1 REV__ENSG00000196296|ENST00000395503|ATP2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8234252929688 2 538.823161 1075.63177 NaN NaN NaN NaN NaN NaN NaN 51.005 1 50.951 50.451 51.451 -0.053871 0 0 0 0.82396 1 27595 27595 4.756 0 1 + 33092 23813 22064 22475 38898 38898 0.09697862664938839 LLIVGILLIA 10 Unmodified _LLIVGILLIA_ 0 0 0 REV__ITGB6|p.V725I|1|0.07|ENSG00000115221|chr2:160107774-160107774|C/T|missense_variant REV__ITGB6|p.V725I|1|0.07|ENSG00000115221|chr2:160107774-160107774|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1038.740966796875 1 1037.73328 1036.726 0.58828 0.00061048 1.9127 0.0019849 2.501 0.0025954 1038.742358927641 26.03 0.23497 26.057 25.984 26.219 0.026951 13 10 2 0 0 0 0.72607 1 13575 13575 0 0 1 10211000 + 33093 29393 22065 22476 38899 38899 0.20911001487115755 LLIVGILLIA 10 Unmodified _LLIVGILLIA_ 0 0 0 REV__ITGB6|p.V725I|1|0.07|ENSG00000115221|chr2:160107774-160107774|C/T|missense_variant REV__ITGB6|p.V725I|1|0.07|ENSG00000115221|chr2:160107774-160107774|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.582641601562 1 1037.73328 1036.726 0.60685 0.00062975 1.6927 0.0017566 2.2996 0.0023863 1038.7374131307483 27.054 0.19237 27.083 26.961 27.153 0.028664 12 9 2 0 0 0 0.24012 1 13990 13990 0 0 1 16395000 + 33094 29393 22065 22476 38900 38900 0.20911001487115755 LLIWIKKNLLK 11 Unmodified _LLIWIKKNLLK_ 0 0 0 nc|ENSG00000167118|Q9BTM9-3|URM1;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1;ENST00000372847.1_1_9:131140285-131150177:+|nuORF;ENST00000470840.5_1_9:131140285-131152010:+|nuORF nc|ENSG00000167118|Q9BTM9-3|URM1 nc|ENSG00000167118|Q9BTM9-3|URM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.4693603515625 2 691.468315 1380.92208 NaN NaN NaN NaN NaN NaN NaN 104.56 1 104.51 104.01 105.01 -0.048737 0 0 0 0.9435 1 58054 58054 0 0 1 33095 7577 22066 22477 38901 38901 0.24685386660985387 LLKEIESLSL 10 Unmodified _LLKEIESLSL_ 0 0 0 REV__ENSG00000122644|ENST00000651779|ARL4A REV__ENSG00000122644|ENST00000651779|ARL4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2341003417969 3 382.232307 1143.67509 1.5861 0.00060624 -2.0112 -0.00076873 -0.42511 -0.00016249 382.2317247279109 20.47 0.29427 17.778 17.627 17.921 -2.693 29 14 3 0 0 0 0.36277 1 10875 10875 23.801 0 1 3349200 + 33096 19351 22067 22478 38902 38902 0.10900007651571286 LLKEIKDILK 10 Unmodified _LLKEIKDILK_ 0 0 0 ENSG00000164299|ENST00000296739|SPZ1 ENSG00000164299|ENST00000296739|SPZ1 ENSG00000164299|ENST00000296739|SPZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.9360961914062 3 404.935713 1211.78531 0.13316 5.3923E-05 1.4339 0.00058064 1.5671 0.00063456 404.9359622690253 52.032 0.49542 51.973 51.611 52.107 -0.058914 53 23 4 0 0 0 0.013153 1 28133 28133 81.923 11.579 1 31469000 33097 7173 22068 22479 38903 38903 0.18788852710599713 LLKEQHLW 8 Unmodified _LLKEQHLW_ 0 0 0 nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1;DLC1|p.R1384C|1|0.18|ENSG00000164741|chr8:13088629-13088629|G/A|missense_variant nc|ENSG00000164741|Q96QB1-4|DLC1 nc|ENSG00000164741|Q96QB1-4|DLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.805908203125 2 533.805834 1065.59712 0.97442 0.00052015 0.014322 7.6451E-06 0.98874 0.00052779 533.8057135068715 49.704 0.27121 49.655 49.512 49.784 -0.048824 34 13 3 0 0 0 0.57045 1 26831 26831 28.487 0 1 12849000 33098 7236 22069 22480 38904 38904 0.06694039576859723 LLKGKNMI 8 Unmodified _LLKGKNMI_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.56396484375 1 916.564835 915.557558 0.24034 0.00022029 1.8054 0.0016548 2.0458 0.0018751 916.5663491279635 92.753 0.37362 86.577 86.415 86.788 -6.1757 33 23 2 0 0 0 0.78849 1 61289 61289 9.3474 0 1 16536000 + + 33099 16872 22070 22481 38905 38905 0.09640196301768356 LLKGPEMQGF 10 Unmodified _LLKGPEMQGF_ 0 0 0 ENST00000435475.5_1_1:109420382-109427993:+|nuORF;ENST00000406462.6_1_1:109419695-109427993:+|nuORF ENST00000435475.5_1_1:109420382-109427993:+|nuORF ENST00000435475.5_1_1:109420382-109427993:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2958374023438 2 560.296985 1118.57942 -0.10056 -5.6342E-05 -1.0557 -0.00059148 -1.1562 -0.00064782 560.2965202389399 77.062 0.59098 76.583 76.177 76.768 -0.47945 34 26 2 0 0 0 0.6606 1 42165 42165 7.2892 2.0586 1 506230 33100 12931 22071 22482 38906 38906 0.02486956259690487 LLKHGFLR 8 Unmodified _LLKHGFLR_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS AL20221201_MKP_PDAC_01 4 492.3103942871094 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 108.86 1 102.68 102.18 103.18 -6.1757 0 0 0 0.97444 1 72730 72730 0.69038 0 1 33101 2494 22072 22483 38907 38907 0.11562067021941402 LLKHGFLR 8 Unmodified _LLKHGFLR_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS AL20221201_MKP_PDAC_01 4 492.3111267089844 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 109.61 1 103.44 102.94 103.94 -6.1757 0 0 0 0.97444 1 73195 73195 0.69038 0 1 33102 2494 22072 22483 38908 38908 0.11562067021941402 LLKHGFLR 8 Unmodified _LLKHGFLR_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS AL20221201_MKP_PDAC_01 4 492.3114013671875 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 109.8 1 103.62 103.12 104.12 -6.1757 0 0 0 0.97444 1 73309 73309 0.69038 0 1 33103 2494 22072 22483 38909 38909 0.11562067021941402 LLKHGFLR 8 Unmodified _LLKHGFLR_ 0 0 0 nc|ENSG00000107404|O14640-2|DVL1;ENSG00000107404|ENST00000378888|DVL1 nc|ENSG00000107404|O14640-2|DVL1 nc|ENSG00000107404|O14640-2|DVL1 MSMS AL20221201_MKP_PDAC_01 4 492.310302734375 2 492.311087 982.60762 NaN NaN NaN NaN NaN NaN NaN 109.97 1 103.8 103.3 104.3 -6.1757 0 0 0 0.97444 1 73417 73417 0.69038 0 1 33104 2494 22072 22483 38910 38910 0.11562067021941402 LLKHNPKR 8 Unmodified _LLKHNPKR_ 0 0 0 nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22 nc|ENSG00000124422|Q9UPT9-2|USP22 nc|ENSG00000124422|Q9UPT9-2|USP22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3187255859375 2 503.319443 1004.62433 0.11496 5.786E-05 -1.3478 -0.00067839 -1.2329 -0.00062053 503.31879037571633 33.607 0.22594 33.636 33.543 33.769 0.028934 16 9 2 0 0 0 0.78849 1 17693 17693 9.3474 0 1 2257000 33105 3784 22073 22484 38911 38911 0.12220567907888835 LLKHRKEFWWF 11 Unmodified _LLKHRKEFWWF_ 0 0 0 ENSG00000166507|ENST00000309979|NDST2 ENSG00000166507|ENST00000309979|NDST2 ENSG00000166507|ENST00000309979|NDST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.6304321289062 3 530.629506 1588.86669 NaN NaN NaN NaN NaN NaN NaN 71.871 1 71.871 71.371 72.371 0 0 0 0 0.94301 1 40026 40026 0.094841 0 1 33106 7501 22074 22485 38912 38912 0.09580973193192222 LLKHSREF 8 Unmodified _LLKHSREF_ 0 0 0 nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENSG00000132382|ENST00000254718|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF nc|ENSG00000132382|Q9BQG0-2|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7581176757812 2 515.295633 1028.57671 0.25181 0.00012976 -0.39929 -0.00020575 -0.14748 -7.5997E-05 515.2951523402313 82.576 0.23972 82.576 82.434 82.673 0 20 9 3 0 0 0 8.7369 1 45850 45850 6.3541 0 1 558160 33107 4400 22075 22486 38913 38913 0.06356868917032443 LLKKFLAL 8 Unmodified _LLKKFLAL_ 0 0 0 ENST00000524836.1_1_11:96119342-96123066:-|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.3274230957031 2 473.328414 944.642274 -0.67258 -0.00031835 -1.9316 -0.0009143 -2.6042 -0.0012327 473.32728185372434 106.07 0.24609 106.02 105.9 106.15 -0.048103 23 9 3 0 0 0 0.81107 1 58769 58769 0 0 1 5434200 + 33108 28032 22076 22487 38914 38914 0.1677389011001651 LLKKIKRPG 9 Unmodified _LLKKIKRPG_ 0 0 0 ENST00000561529.1_1_16:71599967-71606118:+|nuORF ENST00000561529.1_1_16:71599967-71606118:+|nuORF ENST00000561529.1_1_16:71599967-71606118:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.729125976562 1 1052.73026 1051.72298 0.17262 0.00018173 0.97895 0.0010306 1.1516 0.0012123 1052.7309668630446 48.946 0.20871 48.574 48.407 48.616 -0.37172 18 10 3 0 0 0 0.21889 1 26308 26308 0.6015 0 1 2566700 33109 15327 22077 22488 38915 38915 0.1991917115292381 LLKKKKKKKK 10 Unmodified _LLKKKKKKKK_ 0 0 0 ENST00000378289.8_1_10:14940166-14940367:-|nuORF ENST00000378289.8_1_10:14940166-14940367:-|nuORF ENST00000378289.8_1_10:14940166-14940367:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.475341796875 2 635.476475 1268.9384 NaN NaN NaN NaN NaN NaN NaN 86.4 1 86.4 85.9 86.9 0 0 0 0 1.0061 1 47859 47859 0 0 1 33110 12541 22078 22489 38916 38916 0.3146851261772099 LLKKRGRRKRI 11 Unmodified _LLKKRGRRKRI_ 0 0 0 REV__ENST00000440595.5_1_20:32580682-32582022:-|nuORF REV__ENST00000440595.5_1_20:32580682-32582022:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 712.4957275390625 2 712.494053 1422.97355 NaN NaN NaN NaN NaN NaN NaN 81.71 1 81.214 80.714 81.714 -0.4952 0 0 0 0.9435 1 44741 44741 0 0 1 + 33111 27078 22079 22490 38917 38917 0.2789856819824763 LLKLKELHLEH 11 Unmodified _LLKLKELHLEH_ 0 0 0 nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4 nc|ENSG00000176204|Q86VH4-2|LRRTM4 nc|ENSG00000176204|Q86VH4-2|LRRTM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.9191284179688 2 686.919187 1371.82382 0.4639 0.00031866 0.13206 9.0714E-05 0.59596 0.00040937 686.9189441662988 73.999 0.21624 74.043 73.943 74.159 0.043983 21 9 3 0 0 0 0.44182 1 40782 40782 19.362 1.9193 1 2392500 33112 8574 22080 22491 38918 38918 0.1527815834510875 LLKLKELHLEH 11 Unmodified _LLKLKELHLEH_ 0 0 0 nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4 nc|ENSG00000176204|Q86VH4-2|LRRTM4 nc|ENSG00000176204|Q86VH4-2|LRRTM4 MSMS AL20221201_MKP_PDAC_01 4 686.9193725585938 2 686.919187 1371.82382 NaN NaN NaN NaN NaN NaN NaN 98.578 1 92.403 91.903 92.903 -6.1757 0 0 0 0.13061 1 65408 65408 45.74 3.4274 1 33113 8574 22080 22491 38919 38919 0.1527815834510875 LLKLPLLQL 9 Unmodified _LLKLPLLQL_ 0 0 0 REV__ENST00000432879.5_1_22:20103490-20103634:+|nuORF REV__ENST00000432879.5_1_22:20103490-20103634:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.867431640625 2 525.867903 1049.72125 1.284 0.00067524 -0.60642 -0.0003189 0.67762 0.00035634 525.8674615738049 101.12 0.083328 94.948 94.907 94.99 -6.1757 7 4 2 0 0 0 0.008678 1 67798 67798 88.904 10.919 1 34344000 + 33114 26995 22081 22492 38920 38920 0.19838117344329476 LLKLWVIKKMP 11 Unmodified _LLKLWVIKKMP_ 0 0 0 REV__ENSG00000276950|ENST00000621179|GSTT4 REV__ENSG00000276950|ENST00000621179|GSTT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.9452514648438 2 684.943619 1367.87268 1.8123 0.0012413 -0.012188 -8.3483E-06 1.8001 0.001233 684.9437253811336 104.26 0.10817 98.082 98.014 98.122 -6.1757 11 5 3 0 0 0 0.74203 1 69842 69842 0.30703 0 1 14295000 + 33115 24660 22082 22493 38921 38921 0.20346355380502246 LLKQDGSAEER 11 Unmodified _LLKQDGSAEER_ 0 0 0 REV__nc|ENSG00000084093|Q13127-4|REST REV__nc|ENSG00000084093|Q13127-4|REST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8533325195312 2 623.325316 1244.63608 0.16735 0.00010431 -3.6813 -0.0022947 -3.514 -0.0021903 623.8240981460233 65.359 0.14653 64.874 64.791 64.938 -0.48428 10 6 2 0 0 0 0.29698 1 35679 35679 8.7454 1.4562 1 888210 + 33116 17730 22083 22494 38922 38922 0.023546753498976614 LLKRNNHLL 9 Unmodified _LLKRNNHLL_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2;REV__ENSG00000096433|ENST00000605930|ITPR3;REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1802978515625 3 374.236497 1119.68766 1.842 0.00068936 -0.069309 -2.5938E-05 1.7727 0.00066342 374.2365005972119 35.982 0.39814 31.789 31.598 31.996 -4.1928 45 24 3 0 0 0 0.20883 1 20930 20930 8.1555 0 1 8464100 + 33117 19369;17961;21045 22084 22495 38923 38923 0.13260508625126022 LLKSKLLIQL 10 Unmodified _LLKSKLLIQL_ 0 0 0 REV__ENSG00000055130|ENST00000325222|CUL1 REV__ENSG00000055130|ENST00000325222|CUL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2732238769531 3 390.272437 1167.79548 NaN NaN NaN NaN NaN NaN NaN 103.51 1 103.46 102.96 103.96 -0.047928 0 0 0 1.0048 1 57487 57487 0.13989 0 1 + 33118 17286 22085 22496 38924 38924 0.21829460435856163 LLKSKLPMY 9 Unmodified _LLKSKLPMY_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8277587890625 2 546.827921 1091.64129 0.453 0.00024771 0.31615 0.00017288 0.76915 0.00042059 546.828287706001 46.189 0.32364 41.234 41.091 41.415 -4.9549 48 21 3 0 0 0 0.08691 2 28461 28461;28600 36.127 12.979 1 21127000 + 33119 29078 22086 22497 38925;38926 38925 0.09913307678834826 LLKSKLPMY 9 Unmodified _LLKSKLPMY_ 0 0 0 REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF REV__ENST00000583350.1_1_18:14377547-14378720:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8882446289062 3 364.887706 1091.64129 1.181 0.00043092 0.92283 0.00033673 2.1038 0.00076765 364.88784067676784 46.245 0.43573 41.29 41.035 41.471 -4.9549 98 29 4 0 0 0 0.1773 1 28544 28544 18.373 6.1324 1 50916000 + 33120 29078 22086 22497 38927 38927 0.09913307678834826 LLKVLLCLRKR 11 Unmodified _LLKVLLCLRKR_ 0 0 0 REV__ENST00000562945.2_1_16:34428496-34428757:-|nuORF REV__ENST00000562945.2_1_16:34428496-34428757:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.9570922851562 2 677.957592 1353.90063 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.78 103.28 104.28 -0.048737 0 0 0 0.9435 1 57656 57656 0 0 1 + 33121 28863 22087 22498 38928 38928 0.23783678360587146 LLKVLRMV 8 Unmodified _LLKVLRMV_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D;REV__nc|ENSG00000102001|O60840-5|CACNA1F;REV__nc|ENSG00000151067|Q13936-2|CACNA1C REV__nc|ENSG00000157388|Q01668-3|CACNA1D MSMS AL20221201_MKP_PDAC_01 4 486.3276062011719 2 486.325348 970.636143 NaN NaN NaN NaN NaN NaN NaN 102.49 1 96.319 95.819 96.819 -6.1757 0 0 0 0.97444 1 68778 68778 0.69038 0 1 + 33122 21379;18213;29702 22088 22499 38929 38929 0.14965048606870823 LLLAELHSL 9 Unmodified _LLLAELHSL_ 0 0 0 REV__nc|ENSG00000186716|P11274-2|BCR REV__nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.8087768554688 2 504.808042 1007.60153 0.42977 0.00021695 -0.26319 -0.00013286 0.16658 8.4091E-05 504.80801779758264 37.442 0.23589 37.442 37.35 37.586 0 19 12 2 0 0 0 0.41742 1 19992 19992 11.64 0 1 3554300 + 33123 23592 22089 22500 38930 38930 0.09803503999762597 LLLAPHSKSR 10 Unmodified _LLLAPHSKSR_ 0 0 0 REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.81787109375 2 561.343115 1120.67168 0.77782 0.00043662 -1.5901 -0.00089257 -0.81225 -0.00045595 561.34221842688 66.668 0.9057 60.493 59.709 60.614 -6.1757 75 51 2 0 0 0 0.23117 1 43119 43119 7.2892 2.0586 1 26913000 + 33124 28490 22090 22501 38931 38931 0.11616802388221004 LLLAQLSDA 9 Unmodified _LLLAQLSDA_ 0 0 0 ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2764892578125 2 472.276575 942.538597 0.58024 0.00027403 0.17294 8.1676E-05 0.75318 0.00035571 472.2768391136766 71.564 0.28493 71.087 70.907 71.192 -0.47609 21 11 2 0 0 0 0.18465 1 39177 39177 24.674 1.5255 1 978190 33125 8513 22091 22502 38932 38932 0.06502938211701803 LLLDPGFD 8 Unmodified _LLLDPGFD_ 0 0 0 REV__nc|ENSG00000185176|A6NM10|AQP12B REV__nc|ENSG00000185176|A6NM10|AQP12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 889.4660034179688 1 889.466561 888.459284 -0.41274 -0.00036712 1.2247 0.0010894 0.812 0.00072225 889.4677732251411 78.898 0.29104 78.412 78.238 78.529 -0.48596 17 11 2 0 0 0 0.5953 1 43174 43174 26.341 0 1 565810 + 33126 23454 22092 22503 38933 38933 0.01059291257570294 LLLDSAMP 8 Unmodified _LLLDSAMP_ 0 0 0 REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2324829101562 2 430.233322 858.45209 0.14928 6.4226E-05 -1.1126 -0.00047867 -0.96331 -0.00041445 430.23270221349725 90.323 0.38332 90.323 90.15 90.533 0 42 22 2 0 0 0 0.80143 1 50041 50041 5.7604 0 1 4198400 + 33127 23676 22093 22504 38934 38934 0.017202353854941066 LLLDSAMP 8 Unmodified _LLLDSAMP_ 0 0 0 REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4580078125 1 859.459367 858.45209 -0.12047 -0.00010354 -1.0026 -0.00086169 -1.1231 -0.00096523 859.4584156101773 90.79 0.4147 90.295 90.095 90.51 -0.49457 54 29 2 0 0 0 0.19755 1 49666 49666 70.865 0 1 4195500 + 33128 23676 22093 22504 38935 38935 0.017202353854941066 LLLDSAMPL 9 Unmodified _LLLDSAMPL_ 0 0 0 REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2762756347656 2 486.775354 971.536154 0.57137 0.00027813 -1.3523 -0.00065826 -0.78092 -0.00038013 486.77477506187984 90.796 0.45871 90.301 90.051 90.51 -0.49458 62 31 3 0 0 0 0.18465 1 49669 49669 24.674 0 1 5127800 + 33129 23676 22094 22505 38936 38936 0.049247664824065396 LLLDSNIRL 9 Unmodified _LLLDSNIRL_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8253784179688 2 528.824224 1055.63389 1.1979 0.00063347 1.3695 0.00072422 2.5674 0.0013577 528.8248459133179 71.054 0.29368 71.09 70.958 71.252 0.035507 30 12 3 0 0 0 0.020973 1 39125 39125 62.573 12.64 1 4424300 33130 3827 22095 22506 38937 38937 0.10830291402749026 LLLDVPTAAV 10 Unmodified _LLLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.3091430664062 2 506.307875 1010.6012 0.42952 0.00021747 0.89597 0.00045364 1.3255 0.00067111 506.3082632433529 81.632 0.22237 81.632 81.515 81.737 0 24 12 3 0 0 0 0.5905 1 45309 45309 11.64 3.047 1 467230 33131 10541 22096 22507 38938 38938 0.09632084279905939 LLLDVPTAAV 10 Unmodified _LLLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.3082885742188 2 506.307875 1010.6012 0.27202 0.00013773 0.40432 0.00020471 0.67635 0.00034244 506.30807006254327 82.174 0.39948 81.679 81.443 81.843 -0.4952 39 15 3 0 0 0 0.1028 2 44936 44936;45034 46.021 22 1 5486700 33132 10541 22096 22507 38939;38940 38939 0.09632084279905939 LLLDVPTAAV 10 Unmodified _LLLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3092956542969 2 506.307875 1010.6012 1.7169 0.00086926 0.0025132 1.2725E-06 1.7194 0.00087053 506.307752772988 81.538 0.19703 81.598 81.507 81.704 0.059929 11 7 2 0 0 0 0.42068 1 45111 45111 20.454 11.86 1 2191600 33133 10541 22096 22507 38941 38941 0.09632084279905939 LLLDVPTAAV 10 Unmodified _LLLDVPTAAV_ 0 0 0 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 ENSG00000216490|ENST00000407280|IFI30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3093566894531 2 506.307875 1010.6012 0.83265 0.00042158 0.26415 0.00013374 1.0968 0.00055532 506.30794673782003 90.097 0.65574 83.921 83.651 84.307 -6.1757 81 37 3 0 0 0 0.017277 3 59373 59373;59498;59639 78.149 40.175 1 33554000 33134 10541 22096 22507 38942;38943;38944 38942 0.09632084279905939 LLLDVTPLSL 10 Unmodified _LLLDVTPLSL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000532091.1_1_11:122929724-122930952:-|nuORF;ENST00000425843.1_1_X:120337248-120337797:-|nuORF;ENST00000508003.1_1_5:137895468-137897466:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF ENSG00000109971|ENST00000534624|HSPA8;ENSG00000113013|ENST00000297185|HSPA9 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3369750976562 2 542.336633 1082.65871 0.84108 0.00045615 -0.95734 -0.0005192 -0.11625 -6.3049E-05 542.3358044379132 101.33 0.14597 95.154 95.046 95.192 -6.1757 11 8 2 0 0 0 0.0093317 1 67982 67982 88.904 30.225 1 13908000 33135 2688;2938 22097 22508 38945 38945 0.12068926485494558 LLLEHLECL 9 Carbamidomethyl (C) _LLLEHLEC(Carbamidomethyl (C))L_ LLLEHLEC(1)L LLLEHLEC(74)L 0 1 0 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3099365234375 2 570.310092 1138.60563 0.8446 0.00048169 -0.79236 -0.00045189 0.052243 2.9795E-05 570.3114631763221 93.658 0.089249 87.483 87.432 87.521 -6.1757 9 4 3 0 0 0 0.012148 1 62023 62023 74.423 36.449 1 4687900 33136 8677;5559;16228 22098 22509 38946 38946 568 0.04187225431155639 LLLEHLLEQ 9 Unmodified _LLLEHLLEQ_ 0 0 0 nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000460573.5_1_9:97767442-97823116:+|nuORF;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF nc|ENSG00000148120|Q8N6M6-4|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5502014160156 3 369.88513 1106.63356 -0.097593 -3.6098E-05 -1.0519 -0.0003891 -1.1495 -0.0004252 369.88467669463836 54.026 0.41718 53.959 53.901 54.319 -0.066936 33 20 2 0 0 0 0.21806 1 29364 29364 2.7352 0 1 2089200 33137 5894 22099 22510 38947 38947 0.08450871682885008 LLLEILHEI 9 Unmodified _LLLEILHEI_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.83740234375 2 546.8368 1091.65905 0.24237 0.00013254 0.056615 3.0959E-05 0.29899 0.0001635 546.8369639631395 96.495 0.34203 96.19 96.009 96.351 -0.30472 54 21 4 0 0 0 0.047788 1 52737 52737 60.39 30.165 1 2126700 33138 10024 22100 22511 38948 38948 0.11688346205323796 LLLEILHEI 9 Unmodified _LLLEILHEI_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.838623046875 2 546.8368 1091.65905 2.2505 0.0012307 -0.88765 -0.0004854 1.3629 0.00074526 546.8363856733995 96 0.38647 96.004 95.816 96.203 0.004158 33 13 4 0 0 0 0.017075 1 53301 53301 85.357 24.967 1 7872800 33139 10024 22100 22511 38949 38949 0.11688346205323796 LLLEILHEI 9 Unmodified _LLLEILHEI_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8369750976562 2 546.8368 1091.65905 0.41453 0.00022668 0.0649 3.5489E-05 0.47943 0.00026217 546.8369157122636 100.65 0.13701 94.472 94.404 94.541 -6.1757 20 9 3 0 0 0 0.011671 1 67343 67343 97.075 36.685 1 138500000 33140 10024 22100 22511 38950 38950 0.11688346205323796 LLLEPELEM 9 Unmodified _LLLEPELEM_ 0 0 0 REV__nc|ENSG00000176390|Q8IUI8-2|CRLF3 REV__nc|ENSG00000176390|Q8IUI8-2|CRLF3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.2843017578125 2 543.791201 1085.56785 0.71465 0.00038862 -1.9138 -0.0010407 -1.1992 -0.0006521 543.7890054813399 42.949 0.2267 38.265 38.142 38.369 -4.6846 19 14 2 0 0 0 0.16785 1 26039 26039 23.148 6.0355 1 6040500 + 33141 22926 22101 22512 38951 38951 0.02848714445690348 LLLERPIR 8 Unmodified _LLLERPIR_ 0 0 0 ENST00000461371.5_1_2:204103717-204116699:+|nuORF;ENST00000356079.8_1_2:204103735-204111503:+|nuORF ENST00000461371.5_1_2:204103717-204116699:+|nuORF ENST00000461371.5_1_2:204103717-204116699:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.3305053710938 2 505.329476 1008.6444 NaN NaN NaN NaN NaN NaN NaN 104.34 1 98.164 97.664 98.664 -6.1757 0 0 0 0.97444 1 69884 69884 2.5775 0 1 33142 12085 22102 22513 38952 38952 0.14042318847850765 LLLFFFLIF 9 Unmodified _LLLFFFLIF_ 0 0 0 ENST00000531814.5_1_11:9685687-9746474:+|nuORF ENST00000531814.5_1_11:9685687-9746474:+|nuORF ENST00000531814.5_1_11:9685687-9746474:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5751647949219 3 391.575457 1171.70454 1.0302 0.00040339 -1.0985 -0.00043016 -0.068372 -2.6773E-05 391.5749749076681 71.163 0.34221 71.202 71.002 71.344 0.039024 43 14 4 0 0 0 0.57331 1 39138 39138 2.9952 0 1 6078500 33143 14915 22103 22514 38953 38953 0.12555616458371333 LLLFKLLLF 9 Unmodified _LLLFKLLLF_ 0 0 0 nc|ENSG00000171611|Q6ISU1-2|PTCRA;nc|ENSG00000171611|Q6ISU1-3|PTCRA;ENSG00000171611|ENST00000304672|PTCRA nc|ENSG00000171611|Q6ISU1-2|PTCRA nc|ENSG00000171611|Q6ISU1-2|PTCRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3821411132812 2 560.380646 1118.74674 -0.19936 -0.00011172 3.17 0.0017764 2.9706 0.0016647 560.8839090763199 103.58 0.14722 103.53 103.47 103.62 -0.047928 9 5 2 0 0 0 0.62242 1 57559 57559 0 0 1 2155500 33144 8123 22104 22515 38954 38954 0.19211591866746858 LLLFKLLLF 9 Unmodified _LLLFKLLLF_ 0 0 0 nc|ENSG00000171611|Q6ISU1-2|PTCRA;nc|ENSG00000171611|Q6ISU1-3|PTCRA;ENSG00000171611|ENST00000304672|PTCRA nc|ENSG00000171611|Q6ISU1-2|PTCRA nc|ENSG00000171611|Q6ISU1-2|PTCRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3819580078125 2 560.380646 1118.74674 1.765 0.00098907 0.75474 0.00042294 2.5197 0.001412 560.380320861691 103.58 0.072266 97.404 97.378 97.45 -6.1757 12 8 2 0 0 0 0.62242 1 69454 69454 0 0 1 6167700 33145 8123 22104 22515 38955 38955 0.19211591866746858 LLLFLTCTL 9 Unmodified _LLLFLTCTL_ 0 0 0 ENST00000311813.9_2_7:30963517-30963790:+|nuORF ENST00000311813.9_2_7:30963517-30963790:+|nuORF ENST00000311813.9_2_7:30963517-30963790:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2738037109375 2 518.809196 1035.60384 1.4906 0.00077336 2.895 0.0015019 4.3856 0.0022753 518.8100632962147 64.376 0.41602 58.2 57.996 58.412 -6.1757 40 22 3 0 0 0 0.18118 1 41582 41582 7.9102 0 1 16546000 33146 11697 22105 22516 38956 38956 0.08746216413192087 LLLFMILTA 9 Unmodified _LLLFMILTA_ 0 0 0 ENST00000497691.5_1_6:3273291-3410459:-|nuORF;nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENSG00000137266|ENST00000406686|SLC22A23 ENST00000497691.5_1_6:3273291-3410459:-|nuORF;nc|ENSG00000137266|A1A5C7-2|SLC22A23 ENST00000497691.5_1_6:3273291-3410459:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 517.8218994140625 2 517.819564 1033.62458 NaN NaN NaN NaN NaN NaN NaN 37.306 1 33.022 32.522 33.522 -4.2835 0 0 0 0.3092 1 21884 21884 24.674 0 1 33147 14404;4919 22106 22517 38957 38957 0.10910806792890071 LLLFPFCIL 9 Unmodified _LLLFPFCIL_ 0 0 0 ENST00000589123.5_2_19:3468387-3468750:+|nuORF ENST00000589123.5_2_19:3468387-3468750:+|nuORF ENST00000589123.5_2_19:3468387-3468750:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2172546386719 3 360.217163 1077.62966 0.06911 2.4895E-05 0.16674 6.0062E-05 0.23585 8.4957E-05 360.2170551587366 34.184 0.35664 34.213 34.036 34.393 0.028934 26 16 3 0 0 0 0.3554 1 18019 18019 9.3831 0 1 1804000 33148 15664 22107 22518 38958 38958 0.0939511065548686 LLLFVRRQ 8 Unmodified _LLLFVRRQ_ 0 0 0 REV__ENSG00000146477|ENST00000275300|SLC22A3 REV__ENSG00000146477|ENST00000275300|SLC22A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8385620117188 2 522.837468 1043.66038 1.6535 0.00086452 0.3539 0.00018503 2.0074 0.0010495 522.8375044069348 109.56 2.8772 103.38 100.94 103.82 -6.1757 1186 553 3 0 0 0 0.80992 4 72476 72476;73018;73227;73334 0.69038 0 1 10843000 + 33149 20839 22108 22519 38959;38960;38961;38962 38959 0.14030025084753106 LLLGLCCSVPH 11 Unmodified _LLLGLCCSVPH_ 0 0 0 REV__nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1 REV__nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1 MSMS AL20221201_MKP_PDAC_01 4 577.8084106445312 2 577.806662 1153.59877 NaN NaN NaN NaN NaN NaN NaN 20.64 1 17.948 17.448 18.448 -2.693 0 0 0 0.93224 1 11003 11003 5.7319 0.43497 1 + 33150 29656 22109 22520 38963 38963 0.028115892789173813 LLLGLEEEEEE 11 Unmodified _LLLGLEEEEEE_ 0 0 0 nc|ENSG00000161911|Q86YW5-3|TREML1 nc|ENSG00000161911|Q86YW5-3|TREML1 nc|ENSG00000161911|Q86YW5-3|TREML1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8786315917969 3 434.881891 1301.62384 NaN NaN NaN NaN NaN NaN NaN 82.4 1 82.462 81.962 82.962 0.062004 0 0 0 0.92234 1 45584 45584 2.8433 0.4085 1 33151 16319 22110 22521 38964 38964 -0.014904059037689876 LLLGLLHR 8 Unmodified _LLLGLLHR_ 0 0 0 REV__ENSG00000005469|ENST00000331536|CROT REV__ENSG00000005469|ENST00000331536|CROT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7425537109375 2 467.813462 933.612371 -0.060708 -2.84E-05 0.36277 0.00016971 0.30206 0.00014131 467.81359344757493 51.631 0.15778 51.572 51.494 51.651 -0.058918 11 7 3 0 0 0 8.7369 1 27922 27922 8.5933 0 1 938540 + 33152 16971 22111 22522 38965 38965 0.14290951164707622 LLLHAWPAAF 10 Unmodified _LLLHAWPAAF_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENST00000530851.6_1_11:111724165-111739381:-|nuORF ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.21875 3 380.218443 1137.6335 1.5713 0.00059744 0.013029 4.9538E-06 1.5843 0.00060239 380.2182295260978 91.727 0.31517 85.551 85.371 85.686 -6.1757 35 17 3 0 0 0 0.68844 1 60709 60709 4.1895 0 1 18469000 33153 1446 22112 22523 38966 38966 0.07018916473543868 LLLHGFFF 8 Unmodified _LLLHGFFF_ 0 0 0 REV__ENST00000262158.6_1_18:46446894-46447551:-|nuORF REV__ENST00000262158.6_1_18:46446894-46447551:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2828063964844 2 497.281463 992.548374 NaN NaN NaN NaN NaN NaN NaN 78.945 1 78.945 78.445 79.445 0 0 0 0 0.9185 1 43859 43859 17.087 2.5049 1 + 33154 25013 22113 22524 38967 38967 0.05180171007759782 LLLHHLSELF 10 Unmodified _LLLHHLSELF_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2391357421875 3 407.904524 1220.69174 0.22539 9.1937E-05 0.22469 9.1653E-05 0.45008 0.00018359 407.90458878999897 85.105 0.65421 78.929 78.483 79.138 -6.1757 46 39 2 0 0 0 0.39779 1 55857 55857 13.615 0 1 34056000 33155 4088 22114 22525 38968 38968 0.09022553328168215 LLLHLITSF 9 Unmodified _LLLHLITSF_ 0 0 0 REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.57861328125 2 528.826235 1055.63792 0.4478 0.00023681 -1.5785 -0.00083475 -1.1307 -0.00059794 528.8260186306236 71.626 0.41882 71.15 71.022 71.441 -0.47609 21 16 2 0 0 0 0.1474 1 39176 39176 28.487 11.545 1 869640 + 33156 22932 22115 22526 38969 38969 0.11232380896467475 LLLHMCRVT 9 Unmodified _LLLHMCRVT_ 0 0 0 REV__ENSG00000130508|ENST00000252804|PXDN REV__ENSG00000130508|ENST00000252804|PXDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3038940429688 2 543.301547 1084.58854 0.97382 0.00052908 -0.63281 -0.00034381 0.34101 0.00018527 543.301053708205 61.373 0.20001 55.225 55.195 55.395 -6.1478 11 9 2 0 0 0 0.047196 1 39584 39584 46.021 4.0654 1 15146000 + 33157 19723 22116 22527 38970 38970 0.049630263443532385 LLLHNLHL 8 Unmodified _LLLHNLHL_ 0 0 0 REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.8042907714844 2 486.803094 971.591636 0.94208 0.00045861 -0.20657 -0.00010056 0.73551 0.00035805 486.80287530747825 81.156 0.58189 74.981 74.585 75.167 -6.1757 56 32 2 0 0 0 0.5953 1 53257 53257 26.341 4.5946 1 12328000 + 33158 27297 22117 22528 38971 38971 0.10470360785029698 LLLHNLHL 8 Unmodified _LLLHNLHL_ 0 0 0 REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF REV__ENST00000460323.1_1_1:151275853-151278830:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7106018066406 2 486.803094 971.591636 0.94208 0.00045861 -0.20657 -0.00010056 0.73551 0.00035805 486.80287530747825 81.156 0.58189 74.981 74.585 75.167 -6.1757 56 32 2 0 0 0 8.7369 1 53195 53195 12.532 3.9383 1 12328000 + 33159 27297 22117 22528 38972 38972 0.10470360785029698 LLLICFYIF 9 Unmodified _LLLICFYIF_ 0 0 0 ENST00000501499.1_1_12:98880649-98880853:-|nuORF ENST00000501499.1_1_12:98880649-98880853:-|nuORF ENST00000501499.1_1_12:98880649-98880853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2225646972656 3 382.220685 1143.64023 0.31951 0.00012212 3.1795 0.0012153 3.499 0.0013374 382.2220101092794 54.823 0.20211 54.756 54.622 54.824 -0.066936 18 9 3 0 0 0 0.46501 1 29795 29795 9.3831 0 1 5619900 33160 14446 22118 22529 38973 38973 0.07415093309896292 LLLIHWFLL 9 Unmodified _LLLIHWFLL_ 0 0 0 REV__ENSG00000172967|ENST00000684488|XKR3 REV__ENSG00000172967|ENST00000684488|XKR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.9136047363281 3 389.914472 1166.72159 0.43211 0.00016849 -1.5069 -0.00058758 -1.0748 -0.00041909 389.9136664270941 36.742 0.45043 36.742 36.547 36.997 0 45 21 3 0 0 0 0.60285 1 19519 19519 1.1933 0.41681 1 1549700 + 33161 22694 22119 22530 38974 38974 0.1448953706417342 LLLILLVLH 9 Unmodified _LLLILLVLH_ 0 0 0 ENST00000301923.13_2_22:40731220-40731268:+|nuORF ENST00000301923.13_2_22:40731220-40731268:+|nuORF ENST00000301923.13_2_22:40731220-40731268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1046.729614257812 1 1046.73361 1045.72634 -0.68706 -0.00071917 -0.61455 -0.00064327 -1.3016 -0.0013624 1046.730781160835 44.339 0.24438 44.339 44.228 44.472 0 16 12 2 0 0 0 0.62242 1 24163 24163 0 0 1 32611000 33162 11577 22120 22531 38975 38975 0.20530421206922256 LLLKHRRL 8 Unmodified _LLLKHRRL_ 0 0 0 nc|ENSG00000134369|Q8NEY1-5|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 nc|ENSG00000134369|Q8NEY1-5|NAV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.2403564453125 3 350.241582 1047.70292 NaN NaN NaN NaN NaN NaN NaN 69.544 1 69.544 69.044 70.044 0 0 0 0 0.97444 1 38745 38745 4.3292 0 1 33163 4601 22121 22532 38976 38976 0.18097420212984616 LLLKKIMAILI 11 Unmodified _LLLKKIMAILI_ 0 0 0 nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12 nc|ENSG00000144452|Q86UK0-2|ABCA12 nc|ENSG00000144452|Q86UK0-2|ABCA12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1268.463256835938 1 1268.87381 1267.86654 -0.61122 -0.00077556 -1.7444 -0.0022135 -2.3556 -0.002989 1268.8678652633412 45.404 0.1046 45.404 45.324 45.429 0 6 5 2 0 0 0 0.30605 1 24749 24749 0 0 1 7128100 33164 5611 22122 22533 38977 38977 0.2433183714902043 LLLKMFRYN 9 Unmodified _LLLKMFRYN_ 0 0 0 REV__nc|ENSG00000119509|Q9Y283-2|INVS REV__nc|ENSG00000119509|Q9Y283-2|INVS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8833618164062 2 599.344269 1196.67399 NaN NaN NaN NaN NaN NaN NaN 16.542 1 16.547 16.047 17.047 0.0050564 0 0 0 0.85798 1 8299 8299 0.52476 0 1 + 33165 19192 22123 22534 38978 38978 0.08351514801711346 LLLKSVHL 8 Unmodified _LLLKSVHL_ 0 0 0 ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENST00000590651.1_1_19:32949377-32959920:+|nuORF ENSG00000178904|ENST00000392250|DPY19L3 ENSG00000178904|ENST00000392250|DPY19L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.808349609375 2 461.807845 921.601138 1.5658 0.00072308 0.38748 0.00017894 1.9532 0.00090202 461.80769674598235 50.215 0.2642 50.166 50.006 50.271 -0.048824 16 12 2 0 0 0 0.54555 1 27129 27129 30.637 0.41173 1 2013900 33166 8780 22124 22535 38979 38979 0.13720129070577514 LLLLAPQG 8 Unmodified _LLLLAPQG_ 0 0 0 ENST00000216237.9_1_22:41626710-41627022:+|nuORF ENST00000216237.9_1_22:41626710-41627022:+|nuORF ENST00000216237.9_1_22:41626710-41627022:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.3039855957031 2 412.765646 823.516739 0.55874 0.00023063 2.6255 0.0010837 3.1842 0.0013143 412.7667563677364 65.488 0.2788 65.488 65.324 65.603 7.6294E-06 17 12 2 0 0 0 8.7369 1 35807 35807 2.8892 0 1 3797700 33167 11008 22125 22536 38980 38980 0.09792178253815109 LLLLCVPGCL 10 Unmodified _LLLLCVPGCL_ 0 0 0 nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H;nc|ENSG00000284690|A0A0K2S4Q6|CD300H nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3034057617188 2 522.303224 1042.5919 1.4715 0.00076858 -0.38496 -0.00020107 1.0866 0.00056751 522.3031906100276 95.678 0.34428 89.503 89.316 89.66 -6.1757 60 21 3 0 0 0 0.34789 1 63405 63405 24.674 0.46393 1 80523000 33168 16615 22126 22537 38981 38981 0.072302763983771 LLLLEIQRLEL 11 Unmodified _LLLLEIQRLEL_ 0 0 0 ENST00000328405.6_1_3:19554789-19559546:+|nuORF ENST00000328405.6_1_3:19554789-19559546:+|nuORF ENST00000328405.6_1_3:19554789-19559546:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.9295654296875 2 676.92922 1351.84389 1.6115 0.0010909 -0.72779 -0.00049266 0.88375 0.00059824 676.9284253952122 105.64 0.36507 99.464 99.375 99.74 -6.1757 74 37 3 0 0 0 0.74203 1 70864 70864 0.30703 0 1 9821200 33169 11834 22127 22538 38982 38982 0.18203909285102782 LLLLFIVIRFL 11 Unmodified _LLLLFIVIRFL_ 0 0 0 ENST00000491089.1_1_7:135330799-135333301:+|nuORF ENST00000491089.1_1_7:135330799-135333301:+|nuORF ENST00000491089.1_1_7:135330799-135333301:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.4598999023438 2 680.459959 1358.90537 NaN NaN NaN NaN NaN NaN NaN 17.426 1 17.431 16.931 17.931 0.0050564 0 0 0 0.9435 1 8789 8789 0 0 1 33170 14275 22128 22539 38983 38983 0.24026885775015216 LLLLKLIKL 9 Unmodified _LLLLKLIKL_ 0 0 0 REV__ENST00000349215.7_1_11:18339453-18343686:-|nuORF REV__ENST00000349215.7_1_11:18339453-18343686:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2115783691406 3 356.270256 1065.78894 NaN NaN NaN NaN NaN NaN NaN 104.62 1 104.57 104.07 105.07 -0.048737 0 0 0 0.8622 1 58087 58087 0 0 1 + 33171 25776 22129 22540 38984 38984 0.25867567275122383 LLLLLFFI 8 Unmodified _LLLLLFFI_ 0 0 0 nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR nc|ENSG00000110148|P32239-3|CCKBR nc|ENSG00000110148|P32239-3|CCKBR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3326110839844 2 496.333165 990.651776 NaN NaN NaN NaN NaN NaN NaN 101.1 1 101.06 100.56 101.56 -0.04216 0 0 0 0.97444 1 56167 56167 0.79363 0 1 33172 2704 22130 22541 38985 38985 0.15607658395560975 LLLLLFPKR 9 Unmodified _LLLLLFPKR_ 0 0 0 REV__ENST00000374369.7_1_20:34025707-34025902:-|nuORF REV__ENST00000374369.7_1_20:34025707-34025902:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 556.70361328125 2 556.881345 1111.74814 NaN NaN NaN NaN NaN NaN NaN 104.9 1 98.728 98.228 99.228 -6.1757 0 0 0 0.85798 1 70220 70220 0.52476 0 1 + 33173 26178 22131 22542 38986 38986 0.19673225955511953 LLLLLLKRK 9 Unmodified _LLLLLLKRK_ 0 0 0 REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.4105834960938 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 107.92 1 101.74 101.24 102.24 -6.1757 0 0 0 0.8622 1 72152 72152 0 0 1 + 33174 26998 22132 22543 38987 38987 0.2559348788090574 LLLLLLKRK 9 Unmodified _LLLLLLKRK_ 0 0 0 REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.4100952148438 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 109.81 1 103.63 103.13 104.13 -6.1757 0 0 0 0.8622 1 73312 73312 0 0 1 + 33175 26998 22132 22543 38988 38988 0.2559348788090574 LLLLLLKRK 9 Unmodified _LLLLLLKRK_ 0 0 0 REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF REV__ENST00000433301.5_1_12:110943436-110952922:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.4109497070312 2 555.410269 1108.80599 NaN NaN NaN NaN NaN NaN NaN 109.98 1 103.81 103.31 104.31 -6.1757 0 0 0 0.8622 1 73424 73424 0 0 1 + 33176 26998 22132 22543 38989 38989 0.2559348788090574 LLLLLLLFAC 10 Unmodified _LLLLLLLFAC_ 0 0 0 nc|ENSG00000162706|Q8N126-3|CADM3;ENSG00000162706|ENST00000368125|CADM3;nc|ENSG00000162706|Q8N126-2|CADM3 nc|ENSG00000162706|Q8N126-3|CADM3 nc|ENSG00000162706|Q8N126-3|CADM3 MSMS AL20221201_MKP_PDAC_01 4 566.0384521484375 2 566.364139 1130.71372 NaN NaN NaN NaN NaN NaN NaN 107.4 1 101.22 100.72 101.72 -6.1757 0 0 0 1.0019 1 71836 71836 0.45834 0 1 33177 6897 22133 22544 38990 38990 0.15359641752388598 LLLLLLLL 8 Unmodified _LLLLLLLL_ 0 0 0 nc|ENSG00000167261|Q9H4A9-2|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000159189|ENST00000374640|C1QC;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000117899|ENST00000261758|MESD;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENSG00000109255|ENST00000264218|NMU;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000183971|ENST00000566435|NPW;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000142538|ENST00000270631|PTH2 nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;REV__ENSG00000184985|ENST00000507866|SORCS2;ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENSG00000166341|ENST00000299441|DCHS1;REV__CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185245|ENST00000329125|GP1BA;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;REV__ENSG00000109255|ENST00000264218|NMU;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000167925|Q8N2G8-3|GHDC;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000088812|ENST00000262919|ATRN;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__ENSG00000182272|ENST00000329962|B4GALNT4;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000159189|ENST00000374640|C1QC;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185245|ENST00000329125|GP1BA;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.3489685058594 2 462.348815 922.683077 -0.042088 -1.9459E-05 0.34777 0.00016079 0.30569 0.00014133 462.34886918556987 66.178 0.24359 65.694 65.563 65.807 -0.48323 17 13 2 0 0 0 0.18189 1 36091 36091 77.196 0 1 6573800 + 33178 1378;763;3090;878;3047;9321;12747;253;9425;18953;10704;7709;10955;17726;20518;5464;21370;21041;10263;18921;4655;1374;16297;9068;6007;6077;17283;13005;20218;23459;24156;5300;17811;26743;23465;22625;7473;8997;3793;4290;10706;22106;19288;19859;20026;21614;22283;23280;22241;24470;3577;2670;6818;17778;17357;1496;25525;1455;8180;143;10535;23223;10340;22381;20578;16924;9349;7403;4905;7684;23259;9042;8755;3883;7259;9077;22061;9287;24345;23457;23486;23439;22745;4417;30010;21464;16826;18653;8358;15400;12023;28907;9310;4668;7593 22134 22545 38991 38991 0.21864231429651682 LLLLLLLL 8 Unmodified _LLLLLLLL_ 0 0 0 nc|ENSG00000167261|Q9H4A9-2|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000159189|ENST00000374640|C1QC;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000117899|ENST00000261758|MESD;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENSG00000109255|ENST00000264218|NMU;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000183971|ENST00000566435|NPW;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000142538|ENST00000270631|PTH2 nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;REV__ENSG00000184985|ENST00000507866|SORCS2;ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENSG00000166341|ENST00000299441|DCHS1;REV__CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185245|ENST00000329125|GP1BA;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;REV__ENSG00000109255|ENST00000264218|NMU;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000167925|Q8N2G8-3|GHDC;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000088812|ENST00000262919|ATRN;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__ENSG00000182272|ENST00000329962|B4GALNT4;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000159189|ENST00000374640|C1QC;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185245|ENST00000329125|GP1BA;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.3490905761719 2 462.348815 922.683077 0.91953 0.00042514 -0.048438 -2.2395E-05 0.87109 0.00040275 462.34866213582507 65.719 0.40317 65.725 65.503 65.907 0.0055466 47 19 3 0 0 0 0.079329 2 36073 35961;36073 108.76 0 1 25342000 + 33179 1378;763;3090;878;3047;9321;12747;253;9425;18953;10704;7709;10955;17726;20518;5464;21370;21041;10263;18921;4655;1374;16297;9068;6007;6077;17283;13005;20218;23459;24156;5300;17811;26743;23465;22625;7473;8997;3793;4290;10706;22106;19288;19859;20026;21614;22283;23280;22241;24470;3577;2670;6818;17778;17357;1496;25525;1455;8180;143;10535;23223;10340;22381;20578;16924;9349;7403;4905;7684;23259;9042;8755;3883;7259;9077;22061;9287;24345;23457;23486;23439;22745;4417;30010;21464;16826;18653;8358;15400;12023;28907;9310;4668;7593 22134 22545 38992;38993 38993 0.21864231429651682 LLLLLLLL 8 Unmodified _LLLLLLLL_ 0 0 0 nc|ENSG00000167261|Q9H4A9-2|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000167261|ENST00000393847|DPEP2;ENSG00000159189|ENST00000374640|C1QC;ENSG00000109743|ENST00000265016|BST1;nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000117899|ENST00000261758|MESD;ENST00000268795.5_1_16:68025981-68027124:-|nuORF;ENST00000369603.9_1_10:112063289-112064608:-|nuORF;ENST00000522399.1_1_1:231090115-231114586:-|nuORF;ENSG00000070031|ENST00000176195|SCT;ENSG00000109255|ENST00000264218|NMU;ENSG00000243364|ENST00000368409|EFNA4;ENSG00000161610|ENST00000293330|HCRT;nc|ENSG00000117899|Q14696-2|MESD;nc|ENSG00000135077|Q8TDQ0-2|HAVCR2;ENSG00000183971|ENST00000566435|NPW;ENST00000522902.1_1_5:156533605-156536090:-|nuORF;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000087116|ENST00000251582|ADAMTS2;nc|ENSG00000087116|O95450-2|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000167925|Q8N2G8-2|GHDC;ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENST00000530717.1_1_11:369803-372772:+|nuORF;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000393132.2_1_7:134331590-134343135:+|nuORF;ENST00000418040.5_1_7:134331590-134346220:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000228789|E2RYF7|HCG22;ENSG00000142538|ENST00000270631|PTH2 nc|ENSG00000167261|Q9H4A9-2|DPEP2;ENSG00000083857|ENST00000441802|FAT1;ENSG00000054654|ENST00000555002|SYNE2;REV__ENSG00000184985|ENST00000507866|SORCS2;ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000167680|ENST00000586582|SEMA6B;ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000083857|ENST00000441802|FAT1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF;ENSG00000166341|ENST00000299441|DCHS1;REV__CON__ENSEMBL:ENSBTAP00000023055;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__ENSG00000172071|ENST00000303236|EIF2AK3;REV__nc|ENSG00000283706|Q9UI38|PRSS50;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000087116|O95450-2|ADAMTS2;REV__ENSG00000184709|ENST00000371542|LRRC26;REV__ENSG00000165905|ENST00000401752|LARGE2;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000087116|ENST00000251582|ADAMTS2;ENSG00000165905|ENST00000401752|LARGE2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000109758|ENST00000382774|HGFAC;ENSG00000215644|ENST00000400723|GCGR;REV__ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000181790|ENST00000517894|ADGRB1;ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENSG00000185245|ENST00000329125|GP1BA;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;REV__ENSG00000109255|ENST00000264218|NMU;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000167925|Q8N2G8-3|GHDC;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000088812|ENST00000262919|ATRN;ENSG00000088812|ENST00000262919|ATRN;REV__ENSG00000141096|ENST00000268793|DPEP3;REV__ENSG00000182272|ENST00000329962|B4GALNT4;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000172071|ENST00000303236|EIF2AK3;CON__ENSEMBL:ENSBTAP00000023055;ENSG00000083807|ENST00000263093|SLC27A5;ENSG00000121316|ENST00000240617|PLBD1;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000132518|ENST00000254854|GUCY2D;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000135077|ENST00000307851|HAVCR2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000178473|ENST00000380433|UCN3;ENSG00000182272|ENST00000329962|B4GALNT4;ENSG00000182578|ENST00000675795|CSF1R;ENSG00000184709|ENST00000371542|LRRC26;ENSG00000184985|ENST00000507866|SORCS2;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000344924.7_1_7:134331590-134346213:+|nuORF;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENST00000565192.1_1_6:31022106-31024293:+|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000121316|ENST00000240617|PLBD1;REV__ENSG00000132518|ENST00000254854|GUCY2D;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000159189|ENST00000374640|C1QC;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000173714|ENST00000311378|WFIKKN2;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000185245|ENST00000329125|GP1BA;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000215644|ENST00000400723|GCGR;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.349609375 2 462.348815 922.683077 1.1468 0.00053023 0.084235 3.8946E-05 1.2311 0.00056918 462.348716218126 71.252 0.31902 65.076 64.985 65.304 -6.1757 21 15 2 0 0 0 0.12772 1 46589 46589 91.927 0 1 24065000 + 33180 1378;763;3090;878;3047;9321;12747;253;9425;18953;10704;7709;10955;17726;20518;5464;21370;21041;10263;18921;4655;1374;16297;9068;6007;6077;17283;13005;20218;23459;24156;5300;17811;26743;23465;22625;7473;8997;3793;4290;10706;22106;19288;19859;20026;21614;22283;23280;22241;24470;3577;2670;6818;17778;17357;1496;25525;1455;8180;143;10535;23223;10340;22381;20578;16924;9349;7403;4905;7684;23259;9042;8755;3883;7259;9077;22061;9287;24345;23457;23486;23439;22745;4417;30010;21464;16826;18653;8358;15400;12023;28907;9310;4668;7593 22134 22545 38994 38994 0.21864231429651682 LLLLLLLLL 9 Unmodified _LLLLLLLLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000142538|ENST00000270631|PTH2 ENSG00000054654|ENST00000555002|SYNE2;ENSG00000204301|ENST00000375023|NOTCH4;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000109758|ENST00000382774|HGFAC;REV__ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000054654|ENST00000555002|SYNE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8911743164062 2 518.890847 1035.76714 NaN NaN NaN NaN NaN NaN NaN 70.752 1 70.788 70.288 71.288 0.035515 0 0 0 0.018858 1 38947 38947 79.935 0 1 33181 763;878;3047;3090;12747;9321;18953;10704;253;7709;9425;4655;21370;10955;21041;20518;10263;5464;18921;6077;24156;23459;20218;13005;9068;23465;6007;5300;26743;7473;1374;16297;17283;24470;2670;23280;22283;21614;17357;20026;4290;10706;22106;6818;25525;3793;16924;20578;7259;22381;4905;3883 22135 22546 38995 38995 0.25068762526552746 LLLLLLLLL 9 Unmodified _LLLLLLLLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000142538|ENST00000270631|PTH2 ENSG00000054654|ENST00000555002|SYNE2;ENSG00000204301|ENST00000375023|NOTCH4;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000109758|ENST00000382774|HGFAC;REV__ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000054654|ENST00000555002|SYNE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.89111328125 2 518.890847 1035.76714 NaN NaN NaN NaN NaN NaN NaN 70.938 1 70.974 70.474 71.474 0.035515 0 0 0 0.0095208 1 39051 39051 93.763 0 1 33182 763;878;3047;3090;12747;9321;18953;10704;253;7709;9425;4655;21370;10955;21041;20518;10263;5464;18921;6077;24156;23459;20218;13005;9068;23465;6007;5300;26743;7473;1374;16297;17283;24470;2670;23280;22283;21614;17357;20026;4290;10706;22106;6818;25525;3793;16924;20578;7259;22381;4905;3883 22135 22546 38996 38996 0.25068762526552746 LLLLLLLLL 9 Unmodified _LLLLLLLLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;ENSG00000169174|ENST00000302118|PCSK9;nc|ENSG00000104972|Q8NHL6-3|LILRB1;nc|ENSG00000155093|Q92932-2|PTPRN2;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;ENSG00000104972|ENST00000324602|LILRB1;ENST00000476805.2_1_2:64977750-64977942:-|nuORF;ENST00000462628.5_1_19:55146093-55147330:+|nuORF;nc|ENSG00000213402|Q14761|PTPRCAP;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3;ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENSG00000243232|ENST00000289269|PCDHAC2;nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;ENSG00000142538|ENST00000270631|PTH2 ENSG00000054654|ENST00000555002|SYNE2;ENSG00000204301|ENST00000375023|NOTCH4;ENSG00000143126|ENST00000271332|CELSR2;nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000064601|ENST00000646241|CTSA;REV__ENSG00000166341|ENST00000299441|DCHS1;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000166341|ENST00000299441|DCHS1;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;nc|ENSG00000131042|Q8N423-4|LILRB2;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;REV__nc|ENSG00000150893|Q5SZK8-2|FREM2;REV__ENSG00000169174|ENST00000302118|PCSK9;ENSG00000109758|ENST00000382774|HGFAC;REV__ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000001036|Q9BTY2-2|FUCA2;REV__nc|ENSG00000054654|Q8WXH0|SYNE2;ENSG00000001036|ENST00000002165|FUCA2;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000125810|ENST00000246006|CD93;ENSG00000134917|ENST00000257359|ADAMTS8;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000161921|ENST00000293778|CXCL16;ENSG00000164897|ENST00000297533|TMUB1;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000243232|ENST00000289269|PCDHAC2;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000134917|ENST00000257359|ADAMTS8;REV__ENSG00000137161|ENST00000372836|CNPY3;REV__ENSG00000142538|ENST00000270631|PTH2;REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000054654|ENST00000555002|SYNE2 MSMS AL20221201_MKP_PDAC_01 4 518.8905029296875 2 518.890847 1035.76714 NaN NaN NaN NaN NaN NaN NaN 76.914 1 70.739 70.239 71.239 -6.1757 0 0 0 0.0095208 1 50305 50305 93.763 0 1 33183 763;878;3047;3090;12747;9321;18953;10704;253;7709;9425;4655;21370;10955;21041;20518;10263;5464;18921;6077;24156;23459;20218;13005;9068;23465;6007;5300;26743;7473;1374;16297;17283;24470;2670;23280;22283;21614;17357;20026;4290;10706;22106;6818;25525;3793;16924;20578;7259;22381;4905;3883 22135 22546 38997 38997 0.25068762526552746 LLLLLLLLLL 10 Unmodified _LLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9579467773438 3 383.957678 1148.8512 NaN NaN NaN NaN NaN NaN NaN 75.296 1 75.342 74.842 75.842 0.045959 0 0 0 0.24996 1 41524 41524 39.95 0 1 33184 3047;3090;9321;7709;9425;18953;10704;10263;18921;10955;21370;20518;24156;23459;13005;9068;16297;5300;23465;6007;26743;3793;25525;22283;23280;2670 22136 22547 38998 38998 0.2827329362346518 LLLLLLLLLL 10 Unmodified _LLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9577331542969 3 383.957678 1148.8512 NaN NaN NaN NaN NaN NaN NaN 75.487 1 75.533 75.033 76.033 0.0467 0 0 0 0.24996 1 41633 41633 39.95 0 1 33185 3047;3090;9321;7709;9425;18953;10704;10263;18921;10955;21370;20518;24156;23459;13005;9068;16297;5300;23465;6007;26743;3793;25525;22283;23280;2670 22136 22547 38999 38999 0.2827329362346518 LLLLLLLLLL 10 Unmodified _LLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG;ENST00000529734.5_1_11:46105847-46142581:-|nuORF;ENST00000323180.10_1_11:46105825-46142581:-|nuORF;ENST00000532883.5_1_11:46112101-46142581:-|nuORF;ENST00000395811.9_1_17:17088208-17088493:+|nuORF;ENST00000482636.1_1_6:26384034-26385742:+|nuORF;ENST00000467485.5_1_6:26384034-26390495:+|nuORF;nc|ENSG00000124508|Q8WVV5-3|BTN2A2;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;ENST00000530312.1_1_11:46142070-46142581:-|nuORF;nc|ENSG00000124508|Q8WVV5-2|BTN2A2;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185896|ENST00000332556|LAMP1;ENSG00000109758|ENST00000382774|HGFAC;nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;REV__nc|ENSG00000157193|Q14114-2|LRP8;REV__ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000124508|Q8WVV5-5|BTN2A2;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000182578|ENST00000675795|CSF1R;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000168056|ENST00000301873|LTBP3;REV__ENSG00000182578|ENST00000675795|CSF1R;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20221201_MKP_PDAC_01 4 383.9584655761719 3 383.957678 1148.8512 NaN NaN NaN NaN NaN NaN NaN 81.085 1 74.91 74.41 75.41 -6.1757 0 0 0 0.49971 1 53209 53209 26.268 0 1 33186 3047;3090;9321;7709;9425;18953;10704;10263;18921;10955;21370;20518;24156;23459;13005;9068;16297;5300;23465;6007;26743;3793;25525;22283;23280;2670 22136 22547 39000 39000 0.2827329362346518 LLLLLLLLLLL 11 Unmodified _LLLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.652587890625 3 421.652366 1261.93527 NaN NaN NaN NaN NaN NaN NaN 79.409 1 79.464 78.964 79.964 0.05497 0 0 0 0.13883 1 43879 43879 40.239 0 1 33187 3047;3090;9321;10704;18953;10263;18921;21370;23465;16297;13005;23459;24156;26743 22137 22548 39001 39001 0.3147782472037761 LLLLLLLLLLL 11 Unmodified _LLLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.974853515625 2 631.974911 1261.93527 NaN NaN NaN NaN NaN NaN NaN 79.551 1 79.606 79.106 80.106 0.05497 0 0 0 0.082301 1 43959 43959 53.576 0 1 33188 3047;3090;9321;10704;18953;10263;18921;21370;23465;16297;13005;23459;24156;26743 22137 22548 39002 39002 0.3147782472037761 LLLLLLLLLLL 11 Unmodified _LLLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.6533203125 3 421.652366 1261.93527 NaN NaN NaN NaN NaN NaN NaN 79.591 1 79.646 79.146 80.146 0.05497 0 0 0 0.25486 1 43982 43982 21.59 0 1 33189 3047;3090;9321;10704;18953;10263;18921;21370;23465;16297;13005;23459;24156;26743 22137 22548 39003 39003 0.3147782472037761 LLLLLLLLLLL 11 Unmodified _LLLLLLLLLLL_ 0 0 0 ENSG00000204301|ENST00000375023|NOTCH4;nc|ENSG00000204301|Q99466-3|NOTCH4;ENSG00000157193|ENST00000306052|LRP8;ENSG00000184992|ENST00000341446|BRI3BP;nc|ENSG00000157193|Q14114-4|LRP8;ENSG00000204583|ENST00000376608|LRCOL1;ENST00000293778.10_2_17:4636851-4637124:-|nuORF;ENST00000536100.1_1_12:133182714-133186967:-|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC;ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000204301|ENST00000375023|NOTCH4;REV__ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000185033|Q9NPR2-2|SEMA4B;REV__nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000290691|A6NGW2|STRCP1;ENST00000413911.1_1_2:191745560-191746172:-|nuORF;REV__ENSG00000115155|ENST00000272371|OTOF;REV__ENSG00000184992|ENST00000341446|BRI3BP;REV__ENSG00000204301|ENST00000375023|NOTCH4;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENSG00000114554|ENST00000393409|PLXNA1 MSMS AL20221201_MKP_PDAC_01 4 421.6521911621094 3 421.652366 1261.93527 NaN NaN NaN NaN NaN NaN NaN 85.122 1 78.946 78.446 79.446 -6.1757 0 0 0 0.13883 1 56043 56043 27.223 0 1 33190 3047;3090;9321;10704;18953;10263;18921;21370;23465;16297;13005;23459;24156;26743 22137 22548 39004 39004 0.3147782472037761 LLLLLLLLLVR 11 Unmodified _LLLLLLLLLVR_ 0 0 0 REV__ENSG00000161921|ENST00000293778|CXCL16;REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF REV__ENST00000413911.1_1_2:191745560-191746172:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 646.4743041992188 2 646.475609 1290.93667 NaN NaN NaN NaN NaN NaN NaN 105.39 1 99.211 98.711 99.711 -6.1757 0 0 0 0.9435 1 70618 70618 0 0 1 + 33191 26743;21614 22138 22549 39005 39005 0.3028345880911729 LLLLLLLPGQ 10 Unmodified _LLLLLLLPGQ_ 0 0 0 REV__nc|ENSG00000196811|P07510-2|CHRNG REV__nc|ENSG00000196811|P07510-2|CHRNG MULTI-MSMS AL20221201_MKP_PDAC_01 4 1092.906616210938 1 1092.73909 1091.73182 0.799 0.0008731 -1.1239 -0.0012281 -0.32485 -0.00035497 1092.7370427081182 52.645 0.18614 46.91 46.856 47.042 -5.7345 13 10 2 0 0 0 0.66569 2 33235 33235;33257 6.7232 0.51738 1 20218000 + 33192 23870 22139 22550 39006;39007 39006 0.18962099998748272 LLLLLLPVPA 10 Unmodified _LLLLLLPVPA_ 0 0 0 ENST00000537729.5_2_12:122669091-122670750:+|nuORF;ENST00000541498.5_1_12:122669091-122685110:+|nuORF ENST00000537729.5_2_12:122669091-122670750:+|nuORF ENST00000537729.5_2_12:122669091-122670750:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1061.732788085938 1 1061.73328 1060.726 0.46498 0.00049368 -0.56767 -0.00060271 -0.10269 -0.00010903 1061.7335160346463 46.563 0.31108 46.226 46.093 46.404 -0.33664 18 15 2 0 0 0 0.72196 1 24884 24884 0.45834 0 1 7135700 33193 14995 22140 22551 39008 39008 0.19807001487060916 LLLLLLVL 8 Unmodified _LLLLLLVL_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1;ENSG00000171812|ENST00000397799|COL8A2;ENST00000556356.1_1_12:57602422-57606335:+|nuORF;chr1:206016145-206021049|165|35.8|0.89|5.33|-|ENST00000360218|CTSE,CTSE;nc|ENSG00000196188|P14091-3|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000142513|Q9BZG2-3|ACP4;nc|ENSG00000142513|Q9BZG2-2|ACP4;chr1:206021182-206022150|162|16.63|0.77|4.44|-|ENST00000677924|CTSE,CTSE;ENSG00000169413|ENST00000304677|RNASE6;ENST00000483836.1_1_22:50500014-50511179:-|nuORF;nc|ENSG00000196188|P14091-2|CTSE;ENSG00000164715|ENST00000297293|LMTK2;ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5;ENSG00000142513|ENST00000270593|ACP4;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000100427|ENST00000311597|MLC1;ENSG00000132334|ENST00000254667|PTPRE ENSG00000123384|ENST00000243077|LRP1;ENSG00000164715|ENST00000297293|LMTK2;ENSG00000182685|ENST00000328540|BRICD5;ENSG00000142513|ENST00000270593|ACP4;nc|ENSG00000100427|Q15049-2|MLC1;ENSG00000132334|ENST00000254667|PTPRE ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.3410339355469 2 455.34099 908.667426 0.57086 0.00025993 -0.26679 -0.00012148 0.30407 0.00013845 455.3408172601261 73.648 0.34524 73.692 73.519 73.864 0.043983 33 15 3 0 0 0 0.5245 1 40573 40573 32.454 0 1 4567000 33194 3705;7234;9077;4394;5420;1826 22141 22552 39009 39009 0.20943944912596635 LLLLLLWPVP 10 Unmodified _LLLLLLWPVP_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1176.278442382812 1 1176.77548 1175.7682 0.75099 0.00088374 1.2163 0.0014313 1.9673 0.002315 1176.777699728615 78.613 0.26255 78.666 78.466 78.728 0.052452 16 10 2 0 0 0 0.23821 1 43328 43328 4.3292 0.73274 1 1672900 33195 6007 22142 22553 39010 39010 0.18734976895439104 LLLLLPPPQPL 11 Unmodified _LLLLLPPPQPL_ 0 0 0 REV__ENSG00000121316|ENST00000240617|PLBD1 REV__ENSG00000121316|ENST00000240617|PLBD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.4010009765625 2 607.399567 1212.78458 NaN NaN NaN NaN NaN NaN NaN 104.23 1 104.18 103.68 104.68 -0.048737 0 0 0 0.94307 1 57871 57871 0.30703 0 1 + 33196 19288 22143 22554 39011 39011 0.1867005806157067 LLLLLSPVII 10 Unmodified _LLLLLSPVII_ 0 0 0 REV__nc|ENSG00000158485|P29016-2|CD1B REV__nc|ENSG00000158485|P29016-2|CD1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1585083007812 3 365.258016 1092.75222 NaN NaN NaN NaN NaN NaN NaN 17.841 1 17.855 17.355 18.355 0.013865 0 0 0 1.0048 1 8903 8903 0.13989 0 1 + 33197 21433 22144 22555 39012 39012 0.2095527065857823 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.8220825195312 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 4.7935 1 4.7935 4.2935 5.2935 0 0 0 0 0.97444 1 2307 2307 0 0 1 33198 17602;15213 22145 22556 39013 39013 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2072448730469 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 76.687 1 76.687 76.187 77.187 0 0 0 0 0.97444 1 42633 42633 0 0 1 33199 17602;15213 22145 22556 39014 39014 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8219604492188 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 15.435 1 15.421 14.921 15.921 -0.014067 0 0 0 0.97444 1 7574 7574 0 0 1 33200 17602;15213 22145 22556 39015 39015 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8233947753906 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 1.1017 1 1.0811 0.58109 1.5811 -0.020623 0 0 0 0.97444 1 568 568 0 0 1 33201 17602;15213 22145 22556 39016 39016 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8225708007812 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 2.6193 1 2.6023 2.1023 3.1023 -0.017019 0 0 0 0.97444 1 1331 1331 0 0 1 33202 17602;15213 22145 22556 39017 39017 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8226928710938 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 7.0731 1 7.0883 6.5883 7.5883 0.015238 0 0 0 0.97444 1 3530 3530 0 0 1 33203 17602;15213 22145 22556 39018 39018 0.15270487735733695 LLLLLWLA 8 Unmodified _LLLLLWLA_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF;ENSG00000129467|ENST00000418030|ADCY4;ENST00000545213.5_1_14:24789074-24794639:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF;REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20221201_MKP_PDAC_01 4 477.8225402832031 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 106.7 1 100.53 100.03 101.03 -6.1757 0 0 0 0.97444 1 71410 71410 0 0 1 33204 17602;15213 22145 22556 39019 39019 0.15270487735733695 LLLLQDPK 8 Unmodified _LLLLQDPK_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2972106933594 2 470.29731 938.580068 1.4956 0.00070337 -0.15183 -7.1405E-05 1.3438 0.00063197 470.2971053632904 105.41 0.10258 99.236 99.211 99.313 -6.1757 45 27 2 0 0 0 0.80975 1 70628 70628 0.79363 0 1 14648000 + 33205 23113 22146 22557 39020 39020 0.10832118971029558 LLLLSPPA 8 Unmodified _LLLLSPPA_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000163251|ENST00000295417|FZD5 REV__ENSG00000163251|ENST00000295417|FZD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2681579589844 2 412.268022 822.521491 0.0089121 3.6742E-06 -1.4505 -0.00059802 -1.4416 -0.00059434 412.26743159029945 101.05 1.2065 101.01 100.29 101.49 -0.04216 63 44 2 0 0 0 0.80044 1 56093 56093 6.3541 0 1 1712000 33206 8610 22147 22558 39021 39021 0.103130623965626 LLLLSPPA 8 Unmodified _LLLLSPPA_ 0 0 0 ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000163251|ENST00000295417|FZD5 REV__ENSG00000163251|ENST00000295417|FZD5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 412.268022 822.521491 0.0078072 3.2187E-06 -2.3848 -0.00098318 -2.377 -0.00097996 412.2672193308453 100.86 1.3899 100.86 100.15 101.54 0 -0.075171 -0.00024698 NaN 6.3541 102 56 3 NaN NaN NaN NaN 0 NaN NaN 0 1110600 33207 8610 22147 22558 0.103130623965626 LLLLTCPRGL 10 Unmodified _LLLLTCPRGL_ 0 0 0 ENST00000418983.1_1_6:29759532-29760213:-|nuORF ENST00000418983.1_1_6:29759532-29760213:-|nuORF ENST00000418983.1_1_6:29759532-29760213:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.896484375 3 366.894972 1097.66309 NaN NaN NaN NaN NaN NaN NaN 15.577 1 15.583 15.083 16.083 0.0057774 0 0 0 0.9731 1 7769 7769 3.5871 0.59182 1 33208 13081 22148 22559 39022 39022 0.1181611242739109 LLLLVICTHLG 11 Unmodified _LLLLVICTHLG_ 0 0 0 ENST00000391440.2_1_X:134155474-134155804:-|nuORF ENST00000391440.2_1_X:134155474-134155804:-|nuORF ENST00000391440.2_1_X:134155474-134155804:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.7993469238281 3 398.914143 1193.7206 0.41337 0.0001649 3.3696 0.0013442 3.7829 0.0015091 399.25040410841075 67.077 0.50108 67.095 66.837 67.338 0.018028 36 24 2 0 0 0 0.29947 1 36912 36912 5.4027 0 1 3619600 33209 12653 22149 22560 39023 39023 0.13148954632970344 LLLMPPLLAR 10 Unmodified _LLLMPPLLAR_ 0 0 0 REV__chr22:23779368-23780359|171|86.77|0.78|6.81|+|ENST00000437086|MMP11,MMP11 REV__chr22:23779368-23780359|171|86.77|0.78|6.81|+|ENST00000437086|MMP11,MMP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8646240234375 2 568.864837 1135.71512 NaN NaN NaN NaN NaN NaN NaN 104.07 1 104.02 103.52 104.52 -0.048737 0 0 0 1.0019 1 57787 57787 0.45834 0 1 + 33210 16806 22150 22561 39024 39024 0.15269275841137642 LLLNMHVKI 9 Unmodified _LLLNMHVKI_ 0 0 0 REV__nc|ENSG00000205336|Q9Y653-4|ADGRG1 REV__nc|ENSG00000205336|Q9Y653-4|ADGRG1 MSMS AL20221201_MKP_PDAC_01 4 360.8625793457031 3 360.89145 1079.65252 NaN NaN NaN NaN NaN NaN NaN 18.063 1 15.441 14.941 15.941 -2.6215 0 0 0 0.7453 1 9492 9492 4.897 0 1 + 33211 29914 22151 22562 39025 39025 0.1158812977296293 LLLNNHHL 8 Unmodified _LLLNNHHL_ 0 0 0 ENST00000330927.4_1_17:29632143-29632203:-|nuORF ENST00000330927.4_1_17:29632143-29632203:-|nuORF ENST00000330927.4_1_17:29632143-29632203:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2813720703125 2 487.282526 972.550499 0.37475 0.00018261 -0.35969 -0.00017527 0.015056 7.3367E-06 487.282317977332 68.255 0.26711 68.255 68.124 68.391 0 19 12 2 0 0 0 0.80044 1 38037 38037 6.3541 0 1 675770 33212 11855 22152 22563 39026 39026 0.06312599745569969 LLLPAPDP 8 Unmodified _LLLPAPDP_ 0 0 0 REV__ENST00000321728.11_2_16:24166093-24185883:+|nuORF REV__ENST00000321728.11_2_16:24166093-24185883:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2489318847656 2 418.249829 834.485105 0.1234 5.161E-05 -1.0037 -0.00041979 -0.88028 -0.00036818 418.24846600306137 75.577 0.3873 75.625 75.433 75.82 0.047943 34 17 3 0 0 0 0.80624 1 41696 41696 2.8892 0 1 853960 + 33213 25515 22153 22564 39027 39027 0.0612418549984568 LLLPDYYLVTV 11 Unmodified _LLLPDYYLVTV_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8767700195312 2 654.876122 1307.73769 0.89954 0.00058909 -0.084769 -5.5513E-05 0.81477 0.00053357 654.87630507897 101.27 0.097824 95.098 95.046 95.144 -6.1757 16 5 4 0 0 0 0.10551 1 67926 67926 41.84 15.819 1 68038000 33214 9918 22154 22565 39028 39028 0.09613153719737966 LLLPIEQG 8 Unmodified _LLLPIEQG_ 0 0 0 REV__nc|ENSG00000110514|Q8WXG6-6|MADD REV__nc|ENSG00000110514|Q8WXG6-6|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.77001953125 2 441.768386 881.522219 0.42443 0.0001875 2.0255 0.0008948 2.4499 0.0010823 441.76965696624063 66.303 0.33706 66.303 66.175 66.512 0 36 14 4 0 0 0 0.80624 1 37064 37064 2.8892 0 1 2843400 + 33215 18710 22155 22566 39029 39029 0.07671857045625075 LLLPILVTV 9 Unmodified _LLLPILVTV_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.6757202148438 1 980.675431 979.668155 0.87532 0.0008584 0.36679 0.0003597 1.2421 0.0012181 980.6748871642568 102.3 0.07534 96.129 96.072 96.148 -6.1757 5 3 2 0 0 0 0.027803 1 68656 68656 56.541 0 1 1813500 33216 10177 22156 22567 39030 39030 0.17750739561677165 LLLPLLLKVH 10 Unmodified _LLLPLLLKVH_ 0 0 0 ENST00000374369.7_1_20:34025707-34025902:-|nuORF ENST00000374369.7_1_20:34025707-34025902:-|nuORF ENST00000374369.7_1_20:34025707-34025902:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.937744140625 3 386.937277 1157.79 NaN NaN NaN NaN NaN NaN NaN 14.753 1 14.759 14.259 15.259 0.0057774 0 0 0 1.0061 1 7328 7328 0 0 1 33217 12444 22157 22568 39031 39031 0.21741781644050207 LLLPLLLLKL 10 Unmodified _LLLPLLLLKL_ 0 0 0 nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;nc|ENSG00000143554|Q5K4L6-3|SLC27A3;ENST00000468403.1_1_1:153747811-153748660:+|nuORF nc|ENSG00000143554|Q5K4L6-2|SLC27A3 nc|ENSG00000143554|Q5K4L6-2|SLC27A3 MSMS AL20221201_MKP_PDAC_01 4 574.92333984375 2 574.922678 1147.8308 NaN NaN NaN NaN NaN NaN NaN 12.561 1 10.079 9.5791 10.579 -2.482 0 0 0 1.0061 1 6359 6359 0 0 1 33218 5526 22158 22569 39032 39032 0.2628012296365796 LLLPLLLLKLH 11 Unmodified _LLLPLLLLKLH_ 0 0 0 nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;nc|ENSG00000143554|Q5K4L6-3|SLC27A3;ENST00000468403.1_1_1:153747811-153748660:+|nuORF nc|ENSG00000143554|Q5K4L6-2|SLC27A3 nc|ENSG00000143554|Q5K4L6-2|SLC27A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.453857421875 2 643.452134 1284.88972 NaN NaN NaN NaN NaN NaN NaN 19.342 1 19.35 18.85 19.85 0.0078487 0 0 0 0.9435 1 9836 9836 0 0 1 33219 5526 22159 22570 39033 39033 0.2586659925798358 LLLPLLLLV 9 Unmodified _LLLPLLLLV_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1006.731750488281 1 1006.72747 1005.72019 -0.36932 -0.0003718 2.7054 0.0027236 2.3361 0.0023518 1006.7319619707678 34.406 0.27674 34.214 34.074 34.351 -0.19131 16 11 2 0 0 0 0.62242 1 18001 18001 0 0 1 2732200 + 33220 21383 22160 22571 39034 39034 0.21755902975439767 LLLPLLLLV 9 Unmodified _LLLPLLLLV_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1007.229675292969 1 1006.72747 1005.72019 -0.010937 -1.101E-05 0.21655 0.00021801 0.20561 0.000207 1006.728073131422 24.274 0.28545 24.272 24.114 24.399 -0.0016766 17 13 2 0 0 0 0.2191 1 12328 12328 0 0 1 4366900 + 33221 21383 22160 22571 39035 39035 0.21755902975439767 LLLPLLLLV 9 Unmodified _LLLPLLLLV_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1006.72747 1005.72019 -0.36932 -0.0003718 2.7054 0.0027236 2.3361 0.0023518 1006.7319619707678 34.406 0.27674 34.214 34.074 34.351 -0.19131 0 0 NaN 0 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2732200 + 33222 21383 22160 22571 0.21755902975439767 LLLPLVVP 8 Unmodified _LLLPLVVP_ 0 0 0 REV__nc|ENSG00000113273|P15848-2|ARSB REV__nc|ENSG00000113273|P15848-2|ARSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.5977783203125 1 863.596453 862.589176 1.3728 0.0011856 -0.023456 -2.0257E-05 1.3494 0.0011653 863.596338487623 103.13 0.036057 96.951 96.929 96.965 -6.1757 12 8 2 0 0 0 0.2373 1 69164 69164 64.081 0 1 6694000 + 33223 18859 22161 22572 39036 39036 0.1523851232738025 LLLPLVVP 8 Unmodified _LLLPLVVP_ 0 0 0 REV__nc|ENSG00000113273|P15848-2|ARSB REV__nc|ENSG00000113273|P15848-2|ARSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.3023986816406 2 432.301865 862.589176 1.6812 0.00072678 -1.5504 -0.00067024 0.1308 5.6545E-05 432.3009650530457 103.12 0.037971 96.948 96.932 96.97 -6.1757 14 9 2 0 0 0 0.2373 1 69168 69168 64.081 0 1 4998900 + 33224 18859 22161 22572 39037 39037 0.1523851232738025 LLLPQLKE 8 Unmodified _LLLPQLKE_ 0 0 0 ENSG00000173482|ENST00000580170|PTPRM;nc|ENSG00000173482|P28827|PTPRM ENSG00000173482|ENST00000580170|PTPRM ENSG00000173482|ENST00000580170|PTPRM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.3059387207031 2 477.305136 952.595718 NaN NaN NaN NaN NaN NaN NaN 57.187 1 57.187 56.687 57.687 0 0 0 0 0.9489 1 31820 31820 10.824 0 1 33225 8330 22162 22573 39038 39038 0.11752405488095974 LLLQQAEFL 9 Unmodified _LLLQQAEFL_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.878173828125 3 358.877975 1073.6121 0.082216 2.9506E-05 0.23056 8.2743E-05 0.31278 0.00011225 358.87809963923166 35.912 0.14165 35.912 35.816 35.957 0 11 6 2 0 0 0 0.53666 1 19026 19026 2.9952 0 1 2884800 + 33226 19763 22163 22574 39039 39039 0.07823486654183398 LLLQVGVVP 9 Unmodified _LLLQVGVVP_ 0 0 0 ENST00000491417.1_1_2:239170336-239171614:-|nuORF ENST00000491417.1_1_2:239170336-239171614:-|nuORF ENST00000491417.1_1_2:239170336-239171614:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 469.3087463378906 2 469.307678 936.600803 NaN NaN NaN NaN NaN NaN NaN 105.15 1 98.972 98.472 99.472 -6.1757 0 0 0 0.85737 1 70430 70430 0.6015 0 1 33227 14280 22164 22575 39040 39040 0.12996709350716174 LLLRALGA 8 Unmodified _LLLRALGA_ 0 0 0 REV__ENST00000529957.5_1_16:1401966-1402161:+|nuORF REV__ENST00000529957.5_1_16:1401966-1402161:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 413.7799682617188 2 413.779088 825.543623 NaN NaN NaN NaN NaN NaN NaN 106.88 1 100.7 100.2 101.2 -6.1757 0 0 0 0.97444 1 71520 71520 0.79363 0 1 + 33228 17864 22165 22576 39041 39041 0.12387286864998259 LLLRGGGF 8 Unmodified _LLLRGGGF_ 0 0 0 ENST00000302513.6_1_2:99758144-99758336:+|nuORF ENST00000302513.6_1_2:99758144-99758336:+|nuORF ENST00000302513.6_1_2:99758144-99758336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.5028076171875 1 832.503949 831.496673 -0.3861 -0.00032143 0.19048 0.00015858 -0.19561 -0.00016285 832.5032182480358 104.51 0.032143 104.46 104.44 104.47 -0.048737 4 2 2 0 0 0 0.80975 1 58028 58028 0.79363 0 1 8263600 33229 11582 22166 22577 39042 39042 0.07418427313871234 LLLRLITSFTA 11 Unmodified _LLLRLITSFTA_ 0 0 0 REV__ENST00000557691.1_1_14:71277106-71277232:+|nuORF REV__ENST00000557691.1_1_14:71277106-71277232:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3902587890625 2 624.389731 1246.76491 1.3615 0.00085012 0.10574 6.6025E-05 1.4673 0.00091615 624.389369613785 105.79 0.89849 99.617 99.416 100.31 -6.1757 293 119 4 0 0 0 0.74203 1 71115 71115 0.30703 0 1 16001000 + 33230 28793 22167 22578 39043 39043 0.15139682050789816 LLLRLPRPQ 9 Unmodified _LLLRLPRPQ_ 0 0 0 ENST00000517870.1_1_1:53099041-53108627:+|nuORF ENST00000517870.1_1_1:53099041-53108627:+|nuORF ENST00000517870.1_1_1:53099041-53108627:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.362548828125 2 553.36385 1104.71315 NaN NaN NaN NaN NaN NaN NaN 104.67 1 104.62 104.12 105.12 -0.048737 0 0 0 0.85798 1 58119 58119 0.52476 0.12405 1 33231 14683 22168 22579 39044 39044 0.16497983147542072 LLLRQRHRR 9 Unmodified _LLLRQRHRR_ 0 0 0 REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF REV__ENST00000403681.6_2_12:66218024-66218900:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3989868164062 2 624.399622 1246.78469 1.3596 0.00084892 0.41892 0.00026157 1.7785 0.0011105 624.4000498795127 103.41 0.10946 97.236 97.21 97.319 -6.1757 23 17 2 0 0 0 0.61381 1 69345 69345 0.52476 0.12405 1 5971600 + 33232 26630 22169 22580 39045 39045 0.17116915624774265 LLLRQRKTKEK 11 Unmodified _LLLRQRKTKEK_ 0 0 0 REV__ENST00000525556.1_1_8:61878844-61880304:-|nuORF REV__ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 706.9579467773438 2 706.956635 1411.89872 1.2677 0.0008962 0.7476 0.00052852 2.0153 0.0014247 706.9568746243381 104.99 0.17708 98.81 98.705 98.883 -6.1757 48 13 5 0 0 0 0.74429 1 70254 70254 0 0 1 523260000 + 33233 28357 22170 22581 39046 39046 0.20924340876354108 LLLRQRKTKEK 11 Unmodified _LLLRQRKTKEK_ 0 0 0 REV__ENST00000525556.1_1_8:61878844-61880304:-|nuORF REV__ENST00000525556.1_1_8:61878844-61880304:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.6406555175781 3 471.640182 1411.89872 1.5137 0.00071392 0.65153 0.00030729 2.1652 0.0010212 471.64049692675167 104.99 0.13986 98.815 98.736 98.875 -6.1757 25 10 3 0 0 0 0.74429 1 70280 70280 0.094841 0 1 133540000 + 33234 28357 22170 22581 39047 39047 0.20924340876354108 LLLRRTLLSP 10 Unmodified _LLLRRTLLSP_ 0 0 0 ENST00000272647.9_1_2:128631419-128631482:-|nuORF ENST00000272647.9_1_2:128631419-128631482:-|nuORF ENST00000272647.9_1_2:128631419-128631482:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1181.686767578125 1 1181.77285 1180.76558 1.4338 0.0016944 3.0498 0.0036042 4.4836 0.0052986 1181.7767917283286 91.535 0.10882 91.572 91.477 91.586 0.036499 6 3 2 0 0 0 0.23862 1 50891 50891 0.40072 0 1 6481800 33235 11373 22171 22582 39048 39048 0.18242521490515173 LLLRSVEAY 9 Unmodified _LLLRSVEAY_ 0 0 0 REV__ENSG00000114999|ENST00000233336|TTL REV__ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.311767578125 2 532.310949 1062.60735 0.80776 0.00042998 -0.53883 -0.00028683 0.26893 0.00014315 532.3109911225285 50.549 0.42318 50.135 49.971 50.394 -0.41351 48 20 4 0 0 0 0.53666 1 27304 27304 5.2307 1.6342 1 14579000 + 33236 18947 22172 22583 39049 39049 0.0785460251142922 LLLSILKK 8 Unmodified _LLLSILKK_ 0 0 0 ENST00000558598.1_1_15:77236162-77236210:+|nuORF ENST00000558598.1_1_15:77236162-77236210:+|nuORF ENST00000558598.1_1_15:77236162-77236210:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.334228515625 2 464.333696 926.652839 NaN NaN NaN NaN NaN NaN NaN 84.453 1 84.517 84.017 85.017 0.063171 0 0 0 0.94061 1 46732 46732 12.532 0 1 33237 15282 22173 22584 39050 39050 0.18657872764481453 LLLSLISYH 9 Unmodified _LLLSLISYH_ 0 0 0 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.281005859375 2 529.815867 1057.61718 0.48628 0.00025764 0.44819 0.00023746 0.93447 0.0004951 529.8156973363364 67.189 0.25469 67.207 67.102 67.357 0.018028 18 12 2 0 0 0 0.17275 1 36851 36851 21.747 2.4897 1 1373300 + 33238 24654 22174 22585 39051 39051 0.09067790516814966 LLLSLLNLLLL 11 Unmodified _LLLSLLNLLLL_ 0 0 0 REV__ENSG00000167895|ENST00000318430|TMC8 REV__ENSG00000167895|ENST00000318430|TMC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2885131835938 3 413.287975 1236.8421 NaN NaN NaN NaN NaN NaN NaN 85.08 1 84.579 84.079 85.079 -0.5015 0 0 0 0.94148 1 46553 46553 1.4551 0.94916 1 + 33239 22262 22175 22586 39052 39052 0.2331490026715528 LLLSNVFMSC 10 Unmodified _LLLSNVFMSC_ 0 0 0 REV__ENSG00000115368|ENST00000314761|WDR75 REV__ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1926574707031 3 376.192689 1125.55624 -0.33911 -0.00012757 0.39159 0.00014731 0.052479 1.9742E-05 376.19282118137795 61.192 0.28189 60.703 60.598 60.88 -0.48932 24 13 2 0 0 0 0.63399 1 33320 33320 5.4027 0.68679 1 5714800 + 33240 18975 22176 22587 39053 39053 -0.0015180584928202734 LLLSNVFMSC 10 Unmodified _LLLSNVFMSC_ 0 0 0 REV__ENSG00000115368|ENST00000314761|WDR75 REV__ENSG00000115368|ENST00000314761|WDR75 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.192689 1125.55624 -0.33911 -0.00012757 0.39159 0.00014731 0.052479 1.9742E-05 376.19282118137795 61.192 0.28189 60.703 60.598 60.88 -0.48932 -0.029469 8.4906E-05 NaN 5.4027 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5714800 + 33241 18975 22176 22587 -0.0015180584928202734 LLLSNVFMSC 10 Unmodified _LLLSNVFMSC_ 0 0 0 REV__ENSG00000115368|ENST00000314761|WDR75 REV__ENSG00000115368|ENST00000314761|WDR75 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 376.192689 1125.55624 0.29171 0.00010974 0.12368 4.6529E-05 0.41539 0.00015627 376.19277874538363 60.805 0.23262 60.762 60.633 60.866 -0.04351 0.029469 -0.00021745 NaN 5.4027 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3968300 + 33242 18975 22176 22587 -0.0015180584928202734 LLLSPRALL 9 Unmodified _LLLSPRALL_ 0 0 0 REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3349304199219 2 498.334227 994.653902 1.0224 0.00050947 0.08557 4.2642E-05 1.1079 0.00055212 498.33422882051616 81.043 0.6922 81.103 80.814 81.507 0.059929 90 26 5 0 0 0 0.19127 1 44870 44870 24.021 1.2843 1 173570000 + 33243 18490 22177 22588 39054 39054 0.15636087133384535 LLLSPRALL 9 Unmodified _LLLSPRALL_ 0 0 0 REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3363342285156 2 498.334227 994.653902 0.36343 0.00018111 1.6929 0.00084361 2.0563 0.0010247 498.335112450283 99.791 0.14999 93.616 93.541 93.691 -6.1757 26 10 4 0 0 0 0.1773 1 66558 66558 25.399 2.663 1 210900000 + 33244 18490 22177 22588 39055 39055 0.15636087133384535 LLLSTTDVPA 10 Unmodified _LLLSTTDVPA_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7584228515625 2 515.294965 1028.57538 0.45892 0.00023648 -0.66944 -0.00034496 -0.21051 -0.00010848 515.2945205161087 83.067 0.29419 82.569 82.425 82.719 -0.49751 17 11 2 0 0 0 0.23117 1 45507 45507 7.2892 3.3448 1 824200 33245 8059 22178 22589 39056 39056 0.062231900375991245 LLLVCPGE 8 Unmodified _LLLVCPGE_ 0 0 0 ENSG00000204424|ENST00000375832|LY6G6F;nc|ENSG00000204424|Q5SQ64-2|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2366027832031 2 422.235864 842.457176 1.9782 0.00083529 0.098773 4.1706E-05 2.077 0.00087699 422.2361230108524 100.86 0.15712 94.684 94.623 94.78 -6.1757 15 9 2 0 0 0 0.50586 1 67568 67568 34.187 0 1 37727000 33246 10282 22179 22590 39057 39057 0.029645392481143062 LLLVFFFF 8 Unmodified _LLLVFFFF_ 0 0 0 ENST00000547104.1_1_12:51324047-51325436:+|nuORF ENST00000547104.1_1_12:51324047-51325436:+|nuORF ENST00000547104.1_1_12:51324047-51325436:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.271240234375 2 523.30969 1044.60483 -0.76116 -0.00039832 1.0111 0.0005291 0.24991 0.00013078 523.3101073090196 56.14 0.25528 55.655 55.512 55.767 -0.48554 21 12 3 0 0 0 8.7369 1 30469 30469 41.817 5.3511 1 4645900 33247 15118 22180 22591 39058 39058 0.08430798844415222 LLLVGGGLLS 10 Unmodified _LLLVGGGLLS_ 0 0 0 ENST00000395473.6_2_17:25976035-25976554:+|nuORF ENST00000395473.6_2_17:25976035-25976554:+|nuORF ENST00000395473.6_2_17:25976035-25976554:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.3062438964844 2 471.305136 940.595718 1.5055 0.00070956 0.77603 0.00036575 2.2816 0.0010753 471.30557868488944 108.03 0.15266 101.86 101.82 101.98 -6.1757 36 27 2 0 0 0 0.72607 1 72241 72241 0 0 1 2620700 33248 12770 22181 22592 39059 39059 0.12304405488123393 LLLVLVLVLLV 11 Unmodified _LLLVLVLVLLV_ 0 0 0 nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.9422607421875 2 603.943611 1205.87267 NaN NaN NaN NaN NaN NaN NaN 77.92 1 77.973 77.473 78.473 0.052452 0 0 0 0.9435 1 43018 43018 0 0 1 33249 16178 22182 22593 39060 39060 0.27796678652157425 LLLVPLRLL 9 Unmodified _LLLVPLRLL_ 0 0 0 REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8325805664062 2 525.375895 1048.73724 3.6447 0.0019149 -1.7957 -0.00094341 1.8491 0.00097145 525.3747897594193 99.431 0.099197 99.395 99.352 99.452 -0.036301 8 3 3 0 0 0 0.21834 1 55254 55254 1.8442 0 1 1210700 + 33250 28466 22183 22594 39061 39061 0.21481823581211756 LLLWLLSKK 9 Unmodified _LLLWLLSKK_ 0 0 0 REV__ENST00000342992.10_3_2:179563626-179566308:-|nuORF REV__ENST00000342992.10_3_2:179563626-179566308:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.3743286132812 2 557.373352 1112.73215 NaN NaN NaN NaN NaN NaN NaN 103.16 1 96.981 96.481 97.481 -6.1757 0 0 0 0.84737 1 69184 69184 1.8442 0 1 + 33251 25731 22184 22595 39062 39062 0.18029519718606934 LLLWLMPP 8 Unmodified _LLLWLMPP_ 0 0 0 REV__ENSG00000177558|ENST00000324675|FAM187B REV__ENSG00000177558|ENST00000324675|FAM187B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7953491210938 2 491.793349 981.572146 NaN NaN NaN NaN NaN NaN NaN 17.011 1 17.012 16.512 17.512 0.0010548 0 0 0 0.97444 1 8427 8427 2.8892 0.31174 1 + 33252 22992 22185 22596 39063 39063 0.08062268449918975 LLMADIFLN 9 Unmodified _LLMADIFLN_ 0 0 0 REV__ENSG00000183098|ENST00000377047|GPC6 REV__ENSG00000183098|ENST00000377047|GPC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1049.5673828125 1 1049.56998 1048.5627 1.5401 0.0016164 -2.5341 -0.0026598 -0.99406 -0.0010433 1049.568029567291 70.936 0.6138 70.971 70.81 71.424 0.035515 32 27 2 0 0 0 0.55775 1 39055 39055 3.9444 2.1002 1 3094700 + 33253 23321 22186 22597 39064 39064 0.04036455373739045 LLMATILHL 9 Oxidation (M) _LLM(Oxidation (M))ATILHL_ LLM(1)ATILHL LLM(94)ATILHL 0 0 1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8130493164062 2 520.81227 1039.60999 0.20413 0.00010631 0.17333 9.0273E-05 0.37746 0.00019659 520.8125442505891 74.742 0.47247 74.787 74.595 75.068 0.045959 53 21 4 0 0 0 0.0081063 1 41166 41166 93.883 45.538 1 7733000 33254 4113 22187 22598 39065 39065 732 0.09176734644734097 LLMATILHL 9 Unmodified _LLMATILHL_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.8157958984375 2 512.814813 1023.61507 1.6315 0.00083663 -0.32909 -0.00016876 1.3024 0.00066787 512.814319613785 92.197 0.2841 92.227 92.052 92.336 0.030197 17 10 2 0 0 0 0.027803 1 51304 51304 56.541 37.102 1 2295400 33255 4113 22187 22599 39066 39066 0.10421038507342928 LLMATILHL 9 Unmodified _LLMATILHL_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8148803710938 2 512.814813 1023.61507 1.0723 0.00054987 0.039646 2.0331E-05 1.1119 0.0005702 512.8147549213813 100.26 0.14449 94.08 93.996 94.141 -6.1757 14 8 2 0 0 0 0.013472 1 66973 66973 70.716 28.621 1 87096000 33256 4113 22187 22599 39067 39067 0.10421038507342928 LLMEHIFKL 9 Unmodified _LLMEHIFKL_ 0 0 0 ENSG00000120798|ENST00000333003|NR2C1;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENST00000552484.1_1_12:95422157-95422295:-|nuORF ENSG00000120798|ENST00000333003|NR2C1 ENSG00000120798|ENST00000333003|NR2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8926086425781 3 381.891339 1142.65219 2.0062 0.00076616 -0.017957 -6.8575E-06 1.9883 0.0007593 381.89140516169533 98.303 0.13339 92.128 92.057 92.19 -6.1757 14 8 2 0 0 0 0.053952 1 65198 65198 43.982 16.759 1 11772000 33257 3540 22188 22600 39068 39068 0.08656710053128336 LLMEHIQEI 9 Oxidation (M) _LLM(Oxidation (M))EHIQEI_ LLM(1)EHIQEI LLM(52)EHIQEI 0 0 1 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 nc|ENSG00000136861|Q96SN8-3|CDK5RAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3004760742188 2 571.299724 1140.5849 0.56088 0.00032043 -0.34284 -0.00019586 0.21804 0.00012457 571.2999242225304 46.684 0.3378 46.684 46.481 46.819 0 36 15 3 0 0 0 0.036857 1 25518 25518 51.63 20.993 1 3706400 33258 4869 22189 22601 39069 39069 885 0.020226350514803926 LLMHLLYCL 9 Unmodified _LLMHLLYCL_ 0 0 0 ENST00000373298.6_1_X:78616439-78616535:-|nuORF ENST00000373298.6_1_X:78616439-78616535:-|nuORF ENST00000373298.6_1_X:78616439-78616535:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3154296875 2 559.808674 1117.60279 1.4959 0.0008374 3.7661 0.0021083 5.262 0.0029457 560.3137650357742 88.136 0.51918 81.96 81.83 82.349 -6.1757 32 28 2 0 0 0 0.3554 1 58333 58333 14.582 2.341 1 20933000 33259 12407 22190 22602 39070 39070 0.04869678772638508 LLMIGKKIL 9 Unmodified _LLMIGKKIL_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|195|3|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|195|3|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|195|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.8515625 2 514.848656 1027.68276 3.5939 0.0018503 3.0485 0.0015695 6.6424 0.0034199 514.8501370960896 97.959 0.36649 97.941 97.733 98.099 -0.018188 36 12 4 0 0 0 0.2001 1 54387 54387 23.148 0 1 10345000 33260 15918 22191 22603 39071 39071 0.17002488438151886 LLMLSPPV 8 Unmodified _LLMLSPPV_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|114|1|anti-sense REV__ENSG00000136856|ENST00000373371|SLC2A8 REV__ENSG00000136856|ENST00000373371|SLC2A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.26171875 2 435.261882 868.509211 0.99107 0.00043138 -1.1065 -0.0004816 -0.11539 -5.0223E-05 435.2610848607524 100.53 0.13464 94.358 94.254 94.389 -6.1757 13 7 2 0 0 0 0.80676 1 67251 67251 2.5775 0 1 30228000 + 33261 20188 22192 22604 39072 39072 0.0696970266186554 LLMLSPPV 8 Unmodified _LLMLSPPV_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|114|1|anti-sense REV__ENSG00000136856|ENST00000373371|SLC2A8 REV__ENSG00000136856|ENST00000373371|SLC2A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2619323730469 2 435.261882 868.509211 1.4653 0.00063777 -0.73738 -0.00032095 0.72789 0.00031682 435.26121087714347 100.8 0.28869 94.628 94.445 94.734 -6.1757 32 19 3 0 0 0 0.80676 1 67475 67475 2.5775 2.5775 1 65805000 + 33262 20188 22192 22604 39073 39073 0.0696970266186554 LLMPGPLH 8 Unmodified _LLMPGPLH_ 0 0 0 ENST00000330943.8_1_16:50706657-50706903:-|nuORF ENST00000330943.8_1_16:50706657-50706903:-|nuORF ENST00000330943.8_1_16:50706657-50706903:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2524719238281 2 439.251849 876.489145 0.53566 0.00023529 1.3677 0.00060077 1.9034 0.00083606 439.25236877904825 72.072 0.29419 71.596 71.415 71.709 -0.4761 19 11 2 0 0 0 0.80975 1 39445 39445 0.79363 0 1 682890 33263 11856 22193 22605 39074 39074 0.04595951721921665 LLMPGPLH 8 Unmodified _LLMPGPLH_ 0 0 0 ENST00000330943.8_1_16:50706657-50706903:-|nuORF ENST00000330943.8_1_16:50706657-50706903:-|nuORF ENST00000330943.8_1_16:50706657-50706903:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 439.251849 876.489145 0.53566 0.00023529 1.3677 0.00060077 1.9034 0.00083606 439.25236877904825 72.072 0.29419 71.596 71.415 71.709 -0.4761 0 0 NaN 0.79363 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 682890 33264 11856 22193 22605 0.04595951721921665 LLMPIPEGLTL 11 Unmodified _LLMPIPEGLTL_ 0 0 0 ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 MSMS AL20221201_MKP_PDAC_01 4 598.7882080078125 2 598.851593 1195.68863 NaN NaN NaN NaN NaN NaN NaN 101.43 1 95.259 94.759 95.759 -6.1757 0 0 0 0.76159 1 68056 68056 13.906 2.2658 1 33265 3088 22194 22606 39075 39075 0.09861542159160308 LLMQKSHL 8 Unmodified _LLMQKSHL_ 0 0 0 ENST00000537559.5_1_3:157188116-157188167:-|nuORF ENST00000537559.5_1_3:157188116-157188167:-|nuORF ENST00000537559.5_1_3:157188116-157188167:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2821960449219 2 485.281137 968.547722 1.0598 0.0005143 0.37077 0.00017993 1.4306 0.00069423 485.28151331537833 98.502 0.070862 92.327 92.267 92.338 -6.1757 6 4 2 0 0 0 0.52622 1 65352 65352 32.305 6.9062 1 13972000 33266 14994 22195 22607 39076 39076 0.062190082963979876 LLMSKLMSL 9 Unmodified _LLMSKLMSL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MSMS AL20221201_MKP_PDAC_01 4 518.2981567382812 2 518.300681 1034.58681 NaN NaN NaN NaN NaN NaN NaN 101.6 1 95.42 94.92 95.92 -6.1757 0 0 0 0.57317 1 68176 68176 13.508 1.8676 1 + 33267 23718 22196 22608 39077 39077 0.07089972535754896 LLMTLKRLKRK 11 Unmodified _LLMTLKRLKRK_ 0 0 0 REV__L1MDa_dup787|chr2:111343913-111344229:-|1.2090477969195232|0.3438758665129249|1.81|179.0|20|3|anti-sense REV__L1MDa_dup787|chr2:111343913-111344229:-|1.2090477969195232|0.3438758665129249|1.81|179.0|20|3|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 700.4682006835938 2 700.468324 1398.92209 NaN NaN NaN NaN NaN NaN NaN 93.288 1 93.288 92.788 93.788 0 0 0 0 0.9435 1 51576 51576 0 0 1 + 33268 29416 22197 22609 39078 39078 0.23859063389295443 LLNDHIYVV 9 Unmodified _LLNDHIYVV_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.303466796875 2 543.303124 1084.5917 0.050856 2.763E-05 0.66907 0.00036351 0.71992 0.00039114 543.3028446258094 58.582 0.22955 58.091 57.963 58.193 -0.49079 24 10 3 0 0 0 0.25681 1 31881 31881 19.257 3.4098 1 1427500 33269 3284 22198 22610 39079 39079 0.05278315994382865 LLNDLTQGL 9 Unmodified _LLNDLTQGL_ 0 0 0 nc|ENSG00000290942|Q86YQ2|BPIFA4P nc|ENSG00000290942|Q86YQ2|BPIFA4P nc|ENSG00000290942|Q86YQ2|BPIFA4P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7807312011719 2 493.779482 985.544411 0.68746 0.00033945 0.93574 0.00046205 1.6232 0.0008015 493.78063191602865 85.516 0.61205 85.014 84.732 85.344 -0.5015 94 48 2 0 0 0 0.1773 1 46774 46774 25.399 2.663 1 16028000 33270 16640 22199 22611 39080 39080 0.05106036723384477 LLNDVYNSF 9 Unmodified _LLNDVYNSF_ 0 0 0 REV__ENST00000515204.1_1_4:170653040-170653088:-|nuORF REV__ENST00000515204.1_1_4:170653040-170653088:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2771606445312 2 542.769114 1083.52368 0.39687 0.00021541 0.25591 0.0001389 0.65278 0.00035431 542.7683763948854 67.489 0.24727 67.489 67.294 67.541 0 15 10 2 0 0 0 0.21367 1 37578 37578 4.756 0 1 675880 + 33271 28210 22200 22612 39081 39081 -0.014745536562713824 LLNEILEQV 9 Unmodified _LLNEILEQV_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MSMS AL20221201_MKP_PDAC_01 4 535.8076782226562 2 535.808239 1069.60193 NaN NaN NaN NaN NaN NaN NaN 94.154 1 87.979 87.479 88.479 -6.1757 0 0 0 0.17798 1 62359 62359 43.858 12.59 1 33272 2676 22201 22613 39082 39082 0.06990878928968414 LLNENNIL 8 Unmodified _LLNENNIL_ 0 0 0 ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF ENSG00000184939|ENST00000563169|ZFP90 ENSG00000184939|ENST00000563169|ZFP90 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7659301757812 2 471.766374 941.518196 0.43995 0.00020756 -0.4471 -0.00021093 -0.0071515 -3.3739E-06 471.7659080515598 70.826 0.31879 70.348 70.186 70.505 -0.47736 41 14 4 0 0 0 0.76859 1 38818 38818 11.114 0 1 3692000 33273 9305 22202 22614 39083 39083 0.04509767551905952 LLNEQELQL 9 Unmodified _LLNEQELQL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.3045043945312 2 550.303321 1098.59209 0.49298 0.00027129 -0.057348 -3.1559E-05 0.43563 0.00023973 550.303586276287 66.293 0.31064 66.293 66.135 66.446 0 32 13 3 0 0 0 0.07916 1 36960 36960 37.974 0 1 2671900 33274 3800 22203 22615 39084 39084 0.04673690923573304 LLNFRSLM 8 Unmodified _LLNFRSLM_ 0 0 0 REV__nc|ENSG00000164113|Q96M93-3|ADAD1 REV__nc|ENSG00000164113|Q96M93-3|ADAD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.3046569824219 2 497.281137 992.547722 1.0621 0.00052816 2.6382 0.0013119 3.7003 0.0018401 497.2826328523737 87.404 0.38252 81.228 81.056 81.439 -6.1757 26 20 2 0 0 0 8.7369 1 57709 57709 32.117 3.6301 1 12765000 + 33275 21871 22204 22616 39085 39085 0.051150082963886234 LLNIKVKL 8 Unmodified _LLNIKVKL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000513396.1_1_4:136292387-136292531:-|nuORF;ENST00000453838.2_1_1:182928211-182928406:-|nuORF;ENST00000585825.1_1_17:58888625-58888820:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.8316955566406 2 470.83132 939.648088 0.18327 8.6291E-05 0.14913 7.0216E-05 0.3324 0.00015651 470.8312694167225 61.134 0.6914 61.091 60.927 61.618 -0.04351 64 34 3 0 0 0 0.12393 2 33327 33327;33430 92.822 0 1 20309000 33276 2759;14947 22205 22617 39086;39087 39086 0.17584988621706543 LLNIKVKL 8 Unmodified _LLNIKVKL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000513396.1_1_4:136292387-136292531:-|nuORF;ENST00000453838.2_1_1:182928211-182928406:-|nuORF;ENST00000585825.1_1_17:58888625-58888820:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.8316650390625 2 470.83132 939.648088 1.2099 0.00056967 -0.21792 -0.00010261 0.992 0.00046707 470.8311446967953 88.168 0.8221 81.992 81.551 82.373 -6.1757 119 45 3 0 0 0 0.098639 4 58304 57940;58060;58178;58304 100.37 3.7437 1 81971000 33277 2759;14947 22205 22617 39088;39089;39090;39091 39091 0.17584988621706543 LLNMLPEI 8 Unmodified _LLNMLPEI_ 0 0 0 REV__ENSG00000182481|ENST00000330459|KPNA2 REV__ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.275634765625 2 471.770071 941.52559 0.32652 0.00015404 1.6405 0.00077396 1.9671 0.000928 471.7705388898917 63.076 0.16084 63.076 62.985 63.146 0 10 6 2 0 0 0 0.80676 1 35154 35154 2.5775 0.27475 1 559980 + 33278 23271 22206 22618 39092 39092 0.05248783827960324 LLNNHGPMY 9 Unmodified _LLNNHGPMY_ 0 0 0 ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENST00000483823.1_1_3:88997907-88998639:+|nuORF ENST00000483823.1_1_3:88997907-88998639:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5081481933594 3 353.507777 1057.5015 0.17379 6.1437E-05 0.11028 3.8986E-05 0.28407 0.00010042 353.50784903257164 78.892 0.43073 78.406 78.165 78.596 -0.48596 38 17 3 0 0 0 0.55144 1 43165 43165 2.4985 0 1 1506500 33279 14137 22207 22619 39093 39093 -0.024950566056986645 LLNPAYDVY 9 Unmodified _LLNPAYDVY_ 0 0 0 nc|ENSG00000132182|Q8TEM1-2|NUP210;ENSG00000132182|ENST00000254508|NUP210 nc|ENSG00000132182|Q8TEM1-2|NUP210 nc|ENSG00000132182|Q8TEM1-2|NUP210 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2743530273438 2 534.274032 1066.53351 -0.41174 -0.00021998 -0.55422 -0.0002961 -0.96596 -0.00051609 534.2735465245067 55.737 0.74717 55.737 55.437 56.184 0 113 51 3 0 0 0 0.43463 2 30888 30888;30991 10.824 0.62092 1 14903000 33280 4376 22208 22620 39094;39095 39094 0.0029063434908493946 LLNPHLLG 8 Unmodified _LLNPHLLG_ 0 0 0 REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7693481445312 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 104.55 1 104.5 104 105 -0.048737 0 0 0 0.97444 1 58048 58048 0.79363 0 1 + 33281 29474 22209 22621 39096 39096 0.0801469648534976 LLNQSQQDFL 10 Unmodified _LLNQSQQDFL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3135375976562 2 603.311677 1204.6088 NaN NaN NaN NaN NaN NaN NaN 68.533 1 68.533 68.033 69.033 0 0 0 0 0.97592 1 38199 38199 3.2813 0.54611 1 33282 9204 22210 22622 39097 39097 0.01468191809522068 LLNRRVILVR 10 Unmodified _LLNRRVILVR_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.422607421875 2 626.422231 1250.82991 1.3734 0.00086035 -1.5124 -0.00094739 -0.13895 -8.7041E-05 626.4215537783009 103.58 0.054512 97.404 97.396 97.45 -6.1757 12 6 2 0 0 0 0.72247 1 69457 69457 0.40072 0.050084 1 4135500 + 33283 18554 22211 22623 39098 39098 0.21452721367290906 LLNTTVAPLF 10 Unmodified _LLNTTVAPLF_ 0 0 0 ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8208618164062 2 544.82115 1087.62775 0.36398 0.0001983 -0.50119 -0.00027306 -0.13721 -7.4756E-05 544.8209021245449 72.196 0.60544 71.72 71.415 72.02 -0.47609 63 26 4 0 0 0 0.2178 1 39499 39499 32.305 0 1 4684300 33284 8086 22212 22624 39099 39099 0.08743773171227076 LLNYNADSF 9 Unmodified _LLNYNADSF_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.57861328125 2 528.753464 1055.49238 0.44806 0.00023692 -1.1677 -0.00061744 -0.71967 -0.00038053 528.7532908831931 71.658 0.31917 71.181 71.022 71.341 -0.47609 25 12 3 0 0 0 0.19298 1 39176 39176 13.508 0 1 1357900 + 33285 18425 22213 22625 39100 39100 -0.03315126690381476 LLPAARLR 8 Unmodified _LLPAARLR_ 0 0 0 REV__ENST00000440181.5_1_4:38637635-38666157:-|nuORF REV__ENST00000440181.5_1_4:38637635-38666157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.3028869628906 2 455.303262 908.59197 -0.30538 -0.00013904 -0.85382 -0.00038875 -1.1592 -0.00052779 455.3027017942741 103.5 0.2873 103.45 103.28 103.57 -0.04792 17 11 2 0 0 0 0.80624 1 57479 57479 2.8892 0 1 2215300 + 33286 27074 22214 22626 39101 39101 0.1340178050487566 LLPARASRSL 10 Unmodified _LLPARASRSL_ 0 0 0 ENST00000578711.1_1_17:7127960-7128230:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF ENST00000578711.1_1_17:7127960-7128230:+|nuORF ENST00000578711.1_1_17:7127960-7128230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8941650390625 3 361.892619 1082.65603 0.058593 2.1204E-05 0.39761 0.00014389 0.45621 0.0001651 361.8927668081833 34.289 0.50531 34.316 34.143 34.648 0.027401 57 23 4 0 0 0 0.40136 1 18021 18021 18.721 4.5031 1 55336000 33287 15538 22215 22627 39102 39102 0.1180051587118669 LLPDAPVV 8 Unmodified _LLPDAPVV_ 0 0 0 REV__MBD6|p.L304Pfs*69|1|0.22|ENSG00000166987|chr12:57525871-57525883|GGGGCCCCTGGGA/-|frameshift_variant REV__MBD6|p.L304Pfs*69|1|0.22|ENSG00000166987|chr12:57525871-57525883|GGGGCCCCTGGGA/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.493408203125 1 823.492381 822.485105 0.66889 0.00055082 0.17267 0.00014219 0.84155 0.00069301 823.4924680738782 100.6 0.084724 94.428 94.374 94.459 -6.1757 7 5 2 0 0 0 0.19755 1 67328 67328 70.865 3.8292 1 11401000 + 33288 29459 22216 22628 39103 39103 0.06676185499850362 LLPDIKLLL 9 Unmodified _LLPDIKLLL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.351806640625 2 519.352086 1036.68962 0.38135 0.00019805 -0.24839 -0.000129 0.13296 6.9053E-05 519.3518660527889 88.339 0.61881 87.835 87.561 88.18 -0.50423 101 27 5 0 0 0 0.03568 1 48341 48341 52.268 10.174 1 84619000 + 33289 22392 22217 22629 39104 39104 0.1727412459038078 LLPDIKLLL 9 Unmodified _LLPDIKLLL_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3518676757812 2 519.352086 1036.68962 -0.059684 -3.0997E-05 0.26921 0.00013982 0.20953 0.00010882 519.3521915520643 87.59 0.41178 87.643 87.477 87.888 0.053352 59 18 4 0 0 0 0.022193 1 48648 48648 61.357 9.7277 1 224300000 + 33290 22392 22217 22629 39105 39105 0.1727412459038078 LLPEHFLFL 9 Unmodified _LLPEHFLFL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8260498046875 2 564.826235 1127.63792 1.3235 0.00074755 -1.1845 -0.00066904 0.139 7.8509E-05 564.8264075802159 100.39 0.13761 94.214 94.103 94.241 -6.1757 13 8 2 0 0 0 0.18465 1 67131 67131 24.674 6.5275 1 17218000 33291 7545 22218 22630 39106 39106 0.0792038089646212 LLPETTYRI 9 Unmodified _LLPETTYRI_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3173217773438 2 553.316232 1104.61791 0.58512 0.00032376 0.40486 0.00022402 0.98998 0.00054777 553.316666830849 53.433 0.22844 52.981 52.859 53.087 -0.45173 18 10 2 0 0 0 0.2289 1 28913 28913 27.629 15.097 1 1577500 33292 1157 22219 22631 39107 39107 0.06978585165848017 LLPFLLFRF 9 Unmodified _LLPFLLFRF_ 0 0 0 ENST00000553596.2_1_14:32545579-32545723:-|nuORF ENST00000553596.2_1_14:32545579-32545723:-|nuORF ENST00000553596.2_1_14:32545579-32545723:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2422180175781 3 389.242589 1164.70594 0.16354 6.3655E-05 -1.3347 -0.00051954 -1.1712 -0.00045589 389.242169519493 39.173 0.21852 39.184 39.084 39.303 0.011452 20 9 3 0 0 0 0.58466 1 20872 20872 1.1933 0.41681 1 2615200 33293 15192 22220 22632 39108 39108 0.1301725054711369 LLPGHSLLAL 10 Unmodified _LLPGHSLLAL_ 0 0 0 REV__ENST00000374103.8_1_10:50964838-50966574:-|nuORF REV__ENST00000374103.8_1_10:50964838-50966574:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3255615234375 2 517.32386 1032.63317 0.94544 0.0004891 1.2378 0.00064032 2.1832 0.0011294 517.3252067154818 68.725 0.68721 62.549 62.275 62.962 -6.1757 79 38 3 0 0 0 0.14917 1 44934 44934 39.957 8.689 1 86180000 + 33294 26171 22221 22633 39109 39109 0.11815496753706611 LLPGKTYSF 9 Unmodified _LLPGKTYSF_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2874755859375 2 513.286943 1024.55933 0.26603 0.00013655 0.80354 0.00041245 1.0696 0.000549 513.2875058113631 49.012 0.33493 48.641 48.464 48.799 -0.37172 39 16 3 0 0 0 0.19127 1 26295 26295 24.021 8.1734 1 2416700 33295 2049 22222 22634 39110 39110 0.04803528591378381 LLPGKTYSF 9 Unmodified _LLPGKTYSF_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.286865234375 2 513.286943 1024.55933 0.52556 0.00026976 0.25092 0.00012879 0.77648 0.00039856 513.2869786728427 48.686 0.49207 48.642 48.395 48.887 -0.043694 79 24 5 0 0 0 0.12424 2 26188 26188;26292 30.637 8.8899 1 38505000 33296 2049 22222 22634 39111;39112 39111 0.04803528591378381 LLPGKTYSF 9 Unmodified _LLPGKTYSF_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2874145507812 2 513.286943 1024.55933 0.63233 0.00032457 0.053047 2.7228E-05 0.68538 0.0003518 513.286990461751 54.609 0.55828 48.744 48.5 49.058 -5.8653 108 34 4 0 0 0 0.07916 3 34685 34545;34685;34822 37.974 14.826 1 168560000 33297 2049 22222 22634 39113;39114;39115 39114 0.04803528591378381 LLPGTVYRF 9 Unmodified _LLPGTVYRF_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.31103515625 2 533.30821 1064.60187 0.46683 0.00024896 1.922 0.001025 2.3888 0.001274 533.3096178020286 66.745 0.75514 60.569 60.28 61.035 -6.1757 109 42 4 0 0 0 0.05447 2 43368 43368;43510 43.858 13.633 1 87146000 33298 1157 22223 22635 39116;39117 39116 0.07214923719607214 LLPGTVYRF 9 Unmodified _LLPGTVYRF_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3093872070312 2 533.30821 1064.60187 0.69241 0.00036927 -0.2156 -0.00011498 0.47682 0.00025429 533.3081843667402 67.441 0.62695 61.266 60.872 61.499 -6.1757 53 34 2 0 0 0 0.024882 1 43923 43923 58.679 20.528 1 21373000 33299 1157 22223 22635 39118 39118 0.07214923719607214 LLPHFASPL 9 Unmodified _LLPHFASPL_ 0 0 0 REV__ENST00000394426.5_1_12:53604612-53604810:-|nuORF REV__ENST00000394426.5_1_12:53604612-53604810:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7901306152344 2 497.789653 993.564752 1.1171 0.00055607 1.9794 0.00098535 3.0965 0.0015414 497.791046992061 88.611 0.60946 82.435 82.096 82.706 -6.1757 54 33 2 0 0 0 0.2143 1 58606 58606 21.747 3.6117 1 22763000 + 33300 26444 22224 22636 39119 39119 0.06771252173848552 LLPHGCFG 8 Unmodified _LLPHGCFG_ 0 0 0 ENST00000483151.5_1_6:33259881-33261471:-|nuORF ENST00000483151.5_1_6:33259881-33261471:-|nuORF ENST00000483151.5_1_6:33259881-33261471:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2112731933594 2 422.212724 842.410894 NaN NaN NaN NaN NaN NaN NaN 78.399 1 77.913 77.413 78.413 -0.48596 0 0 0 0.97444 1 42939 42939 2.8892 0 1 33301 14123 22225 22637 39120 39120 -0.016614808633107714 LLPHLLPLL 9 Unmodified _LLPHLLPLL_ 0 0 0 nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8473510742188 2 514.846971 1027.67939 1.5056 0.00077516 -0.45816 -0.00023588 1.0474 0.00053927 514.8466762067902 100.93 0.2009 94.757 94.688 94.889 -6.1757 25 11 3 0 0 0 0.0081202 1 67624 67624 93.763 0 1 125200000 33302 2337 22226 22638 39121 39121 0.16665561655804595 LLPHQYPRW 9 Unmodified _LLPHQYPRW_ 0 0 0 ENST00000254654.7_1_2:239098583-239103478:-|nuORF;ENST00000467133.5_1_2:239098583-239112329:-|nuORF ENST00000254654.7_1_2:239098583-239103478:-|nuORF ENST00000254654.7_1_2:239098583-239103478:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8895874023438 3 403.889097 1208.64546 0.71401 0.00028838 1.155 0.00046648 1.869 0.00075486 403.88925421915377 48.122 0.29653 42.888 42.756 43.053 -5.2339 29 17 2 0 0 0 0.18144 1 29943 29943 24.991 10.034 1 10279000 33303 11165 22227 22639 39122 39122 0.04948533216747819 LLPHQYPRW 9 Unmodified _LLPHQYPRW_ 0 0 0 ENST00000254654.7_1_2:239098583-239103478:-|nuORF;ENST00000467133.5_1_2:239098583-239112329:-|nuORF ENST00000254654.7_1_2:239098583-239103478:-|nuORF ENST00000254654.7_1_2:239098583-239103478:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.889097 1208.64546 0.31933 0.00012897 0.086144 3.4792E-05 0.40547 0.00016377 403.8890983688091 43.16 0.18455 43.145 42.999 43.184 -0.015667 0.12837 -0.00057764 NaN 24.991 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3017100 33304 11165 22227 22639 0.04948533216747819 LLPIDGEGIEL 11 Unmodified _LLPIDGEGIEL_ 0 0 0 ENST00000482273.1_1_21:38269069-38269306:-|nuORF ENST00000482273.1_1_21:38269069-38269306:-|nuORF ENST00000482273.1_1_21:38269069-38269306:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.2207336425781 3 390.220178 1167.63871 NaN NaN NaN NaN NaN NaN NaN 35.126 1 31.03 30.53 31.53 -4.0951 0 0 0 0.75507 1 20332 20332 14.218 4.0676 1 33305 14099 22228 22640 39123 39123 0.06159130754849684 LLPKIWLCL 9 Unmodified _LLPKIWLCL_ 0 0 0 ENST00000335154.9_1_12:50036614-50037331:-|nuORF ENST00000335154.9_1_12:50036614-50037331:-|nuORF ENST00000335154.9_1_12:50036614-50037331:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8964233398438 3 366.896313 1097.66711 NaN NaN NaN NaN NaN NaN NaN 18 1 18 17.5 18.5 0 0 0 0 0.84021 1 8917 8917 2.7352 0.45242 1 33306 11893 22229 22641 39124 39124 0.12218201921086802 LLPKKPTA 8 Unmodified _LLPKKPTA_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2867431640625 2 434.286746 866.558939 1.6897 0.00073383 -0.48211 -0.00020937 1.2076 0.00052445 434.2862752344134 105.28 0.30992 99.101 98.931 99.241 -6.1757 258 77 5 0 0 0 0.80992 1 70557 70557 0.69038 0 1 7342599999.999999 33307 693 22230 22642 39125 39125 0.12032153662164546 LLPKKYHVL 9 Unmodified _LLPKKYHVL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.9061889648438 3 370.905977 1109.6961 -0.2228 -8.2638E-05 0.38726 0.00014364 0.16446 6.0999E-05 370.9060253972435 31.187 0.287 31.217 31.059 31.346 0.030104 29 11 3 0 0 0 0.06294 1 16331 16331 41.84 21.425 1 7854700 33308 263 22231 22643 39126 39126 0.14564062541739986 LLPKLFLIK 9 Unmodified _LLPKLFLIK_ 0 0 0 REV__ENST00000468445.1_1_7:95216267-95216813:-|nuORF REV__ENST00000468445.1_1_7:95216267-95216813:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.2539978027344 3 362.254606 1083.74199 NaN NaN NaN NaN NaN NaN NaN 78.418 1 78.418 77.918 78.918 0 0 0 0 0.8622 1 43579 43579 0 0 1 + 33309 27452 22232 22644 39127 39127 0.2034670772395657 LLPKLFLIK 9 Unmodified _LLPKLFLIK_ 0 0 0 REV__ENST00000468445.1_1_7:95216267-95216813:-|nuORF REV__ENST00000468445.1_1_7:95216267-95216813:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2543029785156 3 362.254606 1083.74199 NaN NaN NaN NaN NaN NaN NaN 64.27 1 63.785 63.285 64.285 -0.48512 0 0 0 0.8622 1 35065 35065 0 0 1 + 33310 27452 22232 22644 39128 39128 0.2034670772395657 LLPKRKRFRKK 11 Unmodified _LLPKRKRFRKK_ 0 0 0 nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1 nc|ENSG00000183977|A8MPX8-2|PP2D1 nc|ENSG00000183977|A8MPX8-2|PP2D1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 735.4987182617188 2 735.498804 1468.98306 NaN NaN NaN NaN NaN NaN NaN 104.14 1 104.1 103.6 104.6 -0.048737 0 0 0 0.9435 1 57825 57825 0 0 1 33311 9213 22233 22645 39129 39129 0.2673233648374662 LLPKTFGQ 8 Unmodified _LLPKTFGQ_ 0 0 0 ENSG00000198176|ENST00000375370|TFDP1;ENST00000465174.1_1_13:114240152-114286060:+|nuORF;ENSG00000183434|ENST00000310125|TFDP3 ENSG00000198176|ENST00000375370|TFDP1;ENSG00000183434|ENST00000310125|TFDP3 ENSG00000183434|ENST00000310125|TFDP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2697448730469 2 452.268553 902.522553 1.6956 0.00076686 0.86283 0.00039023 2.5584 0.0011571 452.26878136728754 104.62 0.22264 98.449 98.29 98.513 -6.1757 18 13 2 0 0 0 0.80992 1 69997 69997 0.69038 0 1 24825000 33312 10058;9150 22234 22646 39130 39130 0.06739276765483737 LLPLIYHHL 9 Unmodified _LLPLIYHHL_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8909301757812 3 373.56221 1117.6648 0.25702 9.6011E-05 0.44037 0.00016451 0.69739 0.00026052 373.56228603867623 61.337 0.31959 61.294 61.125 61.445 -0.043507 38 15 4 0 0 0 0.10734 2 33423 33423;33537 32.305 18.399 1 12960000 33313 1041 22235 22647 39131;39132 39131 0.11067489507649952 LLPLIYHHL 9 Unmodified _LLPLIYHHL_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5617370605469 3 373.56221 1117.6648 1.7802 0.000665 -0.58675 -0.00021919 1.1934 0.00044581 373.56186818613446 88.335 0.70064 82.16 81.83 82.531 -6.1757 86 38 3 0 0 0 0.070838 3 58367 58110;58242;58367 39.957 26.051 1 22790000 33314 1041 22235 22647 39133;39134;39135 39135 0.11067489507649952 LLPLIYHHL 9 Unmodified _LLPLIYHHL_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.3154296875 2 559.839677 1117.6648 1.3169 0.00073725 -3.9563 -0.0022149 -2.6394 -0.0014776 560.3396079974635 88.468 0.088997 82.292 82.24 82.329 -6.1757 5 4 2 0 0 0 0.098824 1 58333 58333 36.466 15.595 1 3166000 33315 1041 22235 22647 39136 39136 0.11067489507649952 LLPLLAQWLLR 11 Unmodified _LLPLLAQWLLR_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 668.42626953125 2 668.42919 1334.84383 -0.32035 -0.00021413 -2.6313 -0.0017588 -2.9516 -0.0019729 668.4272557317581 103.49 0.089096 103.44 103.38 103.47 -0.047928 6 3 2 0 0 0 0.74157 1 57490 57490 0.35063 0.043601 1 851070 33316 9034 22236 22648 39137 39137 0.18979954075734895 LLPLLRMWL 9 Unmodified _LLPLLRMWL_ 0 0 0 REV__chr11:2159961-2160785|156|383.76|0.93|8.69|-|ENST00000512523|INS,INS-IGF2 REV__chr11:2159961-2160785|156|383.76|0.93|8.69|-|ENST00000512523|INS,INS-IGF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8589477539062 2 577.859555 1153.70456 0.54247 0.00031347 -3.1779 -0.0018364 -2.6354 -0.0015229 577.8584644129941 99.63 0.12817 93.454 93.38 93.508 -6.1757 16 7 3 0 0 0 0.14602 1 66426 66426 28.487 3.0875 1 38850000 + 33317 16772 22237 22649 39138 39138 0.1338529318672954 LLPLLRMWL 9 Unmodified _LLPLLRMWL_ 0 0 0 REV__chr11:2159961-2160785|156|383.76|0.93|8.69|-|ENST00000512523|INS,INS-IGF2 REV__chr11:2159961-2160785|156|383.76|0.93|8.69|-|ENST00000512523|INS,INS-IGF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.3350830078125 2 577.859555 1153.70456 0.54247 0.00031347 -3.1779 -0.0018364 -2.6354 -0.0015229 577.8584644129941 99.63 0.12817 93.454 93.38 93.508 -6.1757 16 7 3 0 0 0 0.15117 1 66360 66360 12.532 0 1 38850000 + 33318 16772 22237 22649 39139 39139 0.1338529318672954 LLPLPQGSTE 10 Unmodified _LLPLPQGSTE_ 0 0 0 ENST00000492630.1_1_1:154557411-154557459:-|nuORF ENST00000492630.1_1_1:154557411-154557459:-|nuORF ENST00000492630.1_1_1:154557411-154557459:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2906494140625 2 527.792589 1053.57063 1.2204 0.00064409 0.89812 0.00047402 2.1185 0.0011181 527.7929520871631 102.59 0.036423 96.419 96.404 96.44 -6.1757 9 7 2 0 0 0 0.21952 1 68849 68849 15.847 3.3156 1 2734300 33319 14295 22238 22650 39140 39140 0.04598305894887744 LLPLRRLFV 9 Unmodified _LLPLRRLFV_ 0 0 0 nc|ENSG00000167889|Q3V5L5-2|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B nc|ENSG00000167889|Q3V5L5-2|MGAT5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.87646484375 2 563.876594 1125.73863 NaN NaN NaN NaN NaN NaN NaN 1.4175 1 1.3969 0.89685 1.8969 -0.020623 0 0 0 0.8622 1 735 735 0 0 1 33320 16363 22239 22651 39141 39141 0.18079457669955445 LLPLYVIKLPH 11 Unmodified _LLPLYVIKLPH_ 0 0 0 REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.4207153320312 2 653.418291 1304.82203 -0.26629 -0.000174 2.5507 0.0016667 2.2844 0.0014927 653.4196614980552 103.65 0.099197 103.6 103.55 103.64 -0.047928 5 3 2 0 0 0 0.74203 1 57575 57575 0.30703 0 1 930300 + 33321 25369 22240 22652 39142 39142 0.18181149327165258 LLPMEETII 9 Unmodified _LLPMEETII_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7921752929688 2 529.793743 1057.57293 0.061062 3.2351E-05 -2.1016 -0.0011134 -2.0405 -0.0010811 529.7925940045275 29.226 0.26549 29.256 29.054 29.319 0.030106 15 10 2 0 0 0 0.60285 1 15258 15258 0 0 1 1187600 + 33322 21169 22241 22653 39143 39143 0.0464501830831523 LLPNHSYVF 9 Unmodified _LLPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2910766601562 2 545.290017 1088.56548 -0.033723 -1.8389E-05 0.59444 0.00032414 0.56072 0.00030576 545.2902551259706 54.917 0.50162 54.439 54.231 54.733 -0.47798 64 24 3 0 0 0 0.031062 3 29703 29703;29801;29910 54.774 26.287 1 111440000 33323 4412 22242 22654 39144;39145;39146 39144 0.024740468228856116 LLPNHSYVF 9 Unmodified _LLPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2947387695312 2 545.290017 1088.56548 0.19346 0.00010549 -0.36756 -0.00020043 -0.1741 -9.4934E-05 545.2896713137058 54.53 0.56344 54.463 54.202 54.765 -0.066936 102 27 5 0 0 0 0.012148 3 29522 29522;29622;29724 74.423 32.328 1 736620000 33324 4412 22242 22654 39147;39148;39149 39147 0.024740468228856116 LLPNHSYVF 9 Unmodified _LLPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2918701171875 2 545.290017 1088.56548 0.9765 0.00053247 0.22577 0.00012311 1.2023 0.00065559 545.2900811240037 60.527 1.0288 54.379 54.007 55.036 -6.1478 205 54 5 0 0 0 0.020973 6 39263 38748;38762;38888;39012;39134;39263 62.573 22.615 1 2199500000 33325 4412 22242 22654 39150;39151;39152;39153;39154;39155 39155 0.024740468228856116 LLPNSQLII 9 Unmodified _LLPNSQLII_ 0 0 0 REV__ENSG00000157483|ENST00000288235|MYO1E;REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.8154907226562 2 505.815867 1009.61718 1.0477 0.00052992 0.1215 6.1454E-05 1.1692 0.00059138 505.81586132378817 92.096 0.34264 85.92 85.773 86.115 -6.1757 43 20 3 0 0 0 0.05447 2 60963 60839;60963 43.858 0 1 39611000 + 33326 20568;21384 22243 22655 39156;39157 39157 0.11275790516799589 LLPPPPCPA 9 Carbamidomethyl (C) _LLPPPPC(Carbamidomethyl (C))PA_ LLPPPPC(1)PA LLPPPPC(80)PA 0 1 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.262451171875 2 481.262413 960.510274 0.44236 0.00021289 -0.54483 -0.00026221 -0.10247 -4.9316E-05 481.26218946556804 48.795 1.0376 48.423 48.081 49.119 -0.37172 110 53 3 0 0 0 0.01018 4 26209 26106;26209;26326;26432 79.935 51.761 1 16220000 33327 253 22244 22656 39158;39159;39160;39161 39159 7 0.028439170307706263 LLPPPPCPA 9 Carbamidomethyl (C) _LLPPPPC(Carbamidomethyl (C))PA_ LLPPPPC(1)PA LLPPPPC(67)PA 0 1 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2642822265625 2 481.262413 960.510274 0.50529 0.00024318 -0.12597 -6.0627E-05 0.37931 0.00018255 481.262468490187 55.938 1.3479 50.017 49.587 50.934 -5.9211 278 78 4 0 0 0 0.016115 7 35440 35440;35566;35702;35838;35957;36099;36237 67.413 39.24 1 743290000 33328 253 22244 22656 39162;39163;39164;39165;39166;39167;39168 39162 7 0.028439170307706263 LLPPPPCPA 9 Carbamidomethyl (C) _LLPPPPC(Carbamidomethyl (C))PA_ LLPPPPC(1)PA LLPPPPC(80)PA 0 1 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.51904296875 1 961.51755 960.510274 0.25364 0.00024388 1.0471 0.0010068 1.3007 0.0012507 961.5183478351012 56.024 0.91542 50.103 49.669 50.585 -5.9211 108 53 3 0 0 0 0.01018 3 35531 35531;35662;35812 79.935 51.761 1 48640000 33329 253 22244 22656 39169;39170;39171 39169 7 0.028439170307706263 LLPPPPCPA 9 Unmodified _LLPPPPCPA_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4 ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7520446777344 2 452.751682 903.48881 1.3634 0.00061728 -0.39022 -0.00017667 0.97318 0.00044061 452.751810648292 63.779 0.82774 57.604 57.322 58.15 -6.1757 73 44 2 0 0 0 0.028712 2 41324 41194;41324 56.048 35.177 1 18191000 33330 253 22244 22657 39172;39173 39173 0.03320532002044274 LLPPQAPAL 9 Unmodified _LLPPQAPAL_ 0 0 0 ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2842102050781 2 460.284203 918.553853 0.33308 0.00015331 0.099271 4.5693E-05 0.43235 0.000199 460.2842885292013 57.418 0.68642 56.928 56.645 57.331 -0.48974 50 32 2 0 0 0 0.14602 1 31201 31201 28.487 0 1 1761100 33331 13402 22245 22658 39174 39174 0.09131849799553038 LLPPQAPAL 9 Unmodified _LLPPQAPAL_ 0 0 0 ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF ENST00000441896.1_1_7:57059615-57063740:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2841491699219 2 460.284203 918.553853 0.83208 0.00038299 -0.29514 -0.00013585 0.53694 0.00024715 460.28389438949057 65.07 0.6823 58.895 58.45 59.132 -6.1757 58 37 2 0 0 0 0.087258 1 42296 42296 36.044 7.5574 1 12389000 33332 13402 22245 22658 39175 39175 0.09131849799553038 LLPPRRPTL 9 Unmodified _LLPPRRPTL_ 0 0 0 REV__ENST00000366535.3_1_1:244615028-244615205:-|nuORF REV__ENST00000366535.3_1_1:244615028-244615205:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 531.8434448242188 2 531.842751 1061.67095 NaN NaN NaN NaN NaN NaN NaN 83.049 1 76.873 76.373 77.373 -6.1757 0 0 0 0.23581 1 54589 54589 28.487 3.0875 1 + 33333 25955 22246 22659 39176 39176 0.14258007739181267 LLPPYFTPL 9 Unmodified _LLPPYFTPL_ 0 0 0 REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF REV__ENST00000227451.3_1_11:58972400-58972907:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.2628784179688 2 530.807511 1059.60047 0.3645 0.00019348 1.077 0.00057169 1.4415 0.00076516 530.8079888888979 92.909 0.28086 86.734 86.59 86.871 -6.1757 26 17 2 0 0 0 0.19496 1 61475 61475 5.2307 0 1 12888000 + 33334 24794 22247 22660 39177 39177 0.07305289630835432 LLPQDKKEY 9 Unmodified _LLPQDKKEY_ 0 0 0 ENSG00000116830|ENST00000369466|TTF2;nc|ENSG00000116830|Q9UNY4-2|TTF2 ENSG00000116830|ENST00000369466|TTF2 ENSG00000116830|ENST00000369466|TTF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.7758178710938 2 567.313689 1132.61282 0.90503 0.00051344 -0.26844 -0.00015229 0.63659 0.00036115 567.3133941547518 62.212 0.2806 56.037 55.95 56.23 -6.1757 25 15 2 0 0 0 0.21798 1 40169 40169 2.3027 0 1 15955000 33335 3259 22248 22661 39178 39178 0.05182281303223135 LLPQDPKKRA 10 Unmodified _LLPQDPKKRA_ 0 0 0 ENST00000553838.5_1_14:77794152-77794503:+|nuORF;ENST00000553431.5_1_14:77787511-77795561:+|nuORF;nc|ENSG00000100577|O43708-2|GSTZ1;ENST00000555093.1_1_14:77794152-77797535:+|nuORF;nc|ENSG00000100577|O43708|GSTZ1;ENSG00000100577|ENST00000216465|GSTZ1 ENST00000553838.5_1_14:77794152-77794503:+|nuORF ENST00000553838.5_1_14:77794152-77794503:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2397155761719 3 389.239907 1164.69789 NaN NaN NaN NaN NaN NaN NaN 45.285 1 40.33 39.83 40.83 -4.9549 0 0 0 0.77204 1 27772 27772 13.519 6.0416 1 33336 1845 22249 22662 39179 39179 0.12213071559699529 LLPQLASWIS 10 Unmodified _LLPQLASWIS_ 0 0 0 ENST00000491554.6_1_15:40716399-40727929:+|nuORF;ENST00000481262.6_1_15:40705272-40727929:+|nuORF ENST00000491554.6_1_15:40716399-40727929:+|nuORF ENST00000491554.6_1_15:40716399-40727929:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2539672851562 2 564.326599 1126.63865 0.72055 0.00040662 1.6523 0.00093246 2.3729 0.0013391 564.3268085467506 66.686 1.0278 60.51 59.862 60.89 -6.1757 69 58 2 0 0 0 0.18632 1 43246 43246 19.257 0 1 21049000 33337 14080 22250 22663 39180 39180 0.08039175545513899 LLPRGWLR 8 Unmodified _LLPRGWLR_ 0 0 0 REV__ENST00000584811.5_1_17:15466416-15466713:-|nuORF REV__ENST00000584811.5_1_17:15466416-15466713:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8169555664062 2 505.816536 1009.61852 0.43072 0.00021786 0.47893 0.00024225 0.90965 0.00046012 505.81675166661006 54.769 0.24244 54.702 54.542 54.785 -0.06694 24 11 3 0 0 0 0.74163 1 29719 29719 13.508 0 1 4133000 + 33338 29084 22251 22664 39181 39181 0.11409469396232907 LLPRHLQII 9 Unmodified _LLPRHLQII_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM nc|ENSG00000068976|P11217-2|PYGM nc|ENSG00000068976|P11217-2|PYGM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2601623535156 3 368.241359 1101.70225 NaN NaN NaN NaN NaN NaN NaN 100.22 1 100.18 99.684 100.68 -0.036301 0 0 0 0.85359 1 55667 55667 1.0715 0 1 33339 993 22252 22665 39182 39182 0.1554658077327531 LLPRRNSLI 9 Unmodified _LLPRRNSLI_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2335510253906 3 361.232864 1080.67676 0.20244 7.3127E-05 1.1667 0.00042147 1.3692 0.00049459 361.2333690589632 51.981 0.5143 51.922 51.553 52.067 -0.058918 54 24 3 0 0 0 0.2324 1 28181 28181 20.415 3.8487 1 7470400 33340 7550 22253 22666 39183 39183 0.139651062508392 LLPRRNSLI 9 Unmodified _LLPRRNSLI_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2340393066406 3 361.232864 1080.67676 1.5972 0.00057696 -0.050383 -1.82E-05 1.5468 0.00055876 361.2328690083632 83.266 0.81057 77.091 76.677 77.487 -6.1757 104 43 3 0 0 0 0.19361 3 54815 54546;54815;54977 23.79 3.3752 1 30873000 33341 7550 22253 22666 39184;39185;39186 39185 0.139651062508392 LLPRSLPAD 9 Unmodified _LLPRSLPAD_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2879333496094 2 491.290017 980.565481 -0.30118 -0.00014796 -2.8763 -0.0014131 -3.1775 -0.0015611 491.28826570972274 101.88 0.17808 101.83 101.73 101.9 -0.045853 8 5 2 0 0 0 0.55144 1 56623 56623 4.3292 0.38484 1 3170000 33342 10329 22254 22667 39187 39187 0.07442046822882276 LLPSHPLEL 9 Unmodified _LLPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8002624511719 2 509.800217 1017.58588 NaN NaN NaN NaN NaN NaN NaN 60.239 1 59.749 59.249 60.249 -0.49079 0 0 0 0.46757 1 32799 32799 16.942 4.4107 1 33343 4471 22255 22668 39188 39188 0.07779217482709555 LLPSHPLEL 9 Unmodified _LLPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8000793457031 2 509.800217 1017.58588 NaN NaN NaN NaN NaN NaN NaN 59.914 1 59.861 59.361 60.361 -0.053062 0 0 0 0.071041 1 32668 32668 50.855 24.514 1 33344 4471 22255 22668 39189 39189 0.07779217482709555 LLPSRQFGF 9 Unmodified _LLPSRQFGF_ 0 0 0 ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF ENSG00000134419|ENST00000322989|RPS15A ENSG00000134419|ENST00000322989|RPS15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8012084960938 2 532.798009 1063.58147 0.51524 0.00027452 0.7639 0.00040701 1.2791 0.00068153 532.798295464126 58.817 0.53941 58.756 58.526 59.065 -0.060719 69 26 3 0 0 0 0.07916 3 31971 31971;32079;32186 37.974 11.09 1 66374000 33345 4606 22256 22669 39190;39191;39192 39190 0.05221753059799994 LLPSRQFGF 9 Unmodified _LLPSRQFGF_ 0 0 0 ENSG00000134419|ENST00000322989|RPS15A;ENST00000569365.6_1_16:18794333-18800349:-|nuORF ENSG00000134419|ENST00000322989|RPS15A ENSG00000134419|ENST00000322989|RPS15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7980346679688 2 532.798009 1063.58147 1 0.00053282 1.7369 0.0009254 2.7369 0.0014582 532.7997961511016 64.812 1.729 58.636 57.765 59.494 -6.1757 136 95 3 0 0 0 0.07916 4 41937 41937;42063;42448;42584 37.974 7.3375 1 209870000 33346 4606 22256 22669 39193;39194;39195;39196 39193 0.05221753059799994 LLPSVLLA 8 Unmodified _LLPSVLLA_ 0 0 0 REV__ENSG00000156162|ENST00000414645|DPY19L4 REV__ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.5462646484375 1 825.544417 824.537141 2.3116 0.0019084 0.68866 0.00056852 3.0003 0.0024769 825.5451997930509 95.15 0.35001 95.154 94.942 95.292 0.004158 22 12 2 0 0 0 0.13235 1 52825 52825 90.836 12.391 1 2378400 + 33347 21316 22257 22670 39197 39197 0.1178534891361096 LLPSVLLA 8 Unmodified _LLPSVLLA_ 0 0 0 REV__ENSG00000156162|ENST00000414645|DPY19L4 REV__ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 825.544417 824.537141 2.3116 0.0019084 0.68866 0.00056852 3.0003 0.0024769 825.5451997930509 95.15 0.35001 95.154 94.942 95.292 0.004158 0 0 NaN 90.836 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2378400 + 33348 21316 22257 22670 0.1178534891361096 LLPTCFCFL 9 Unmodified _LLPTCFCFL_ 0 0 0 ENST00000467860.1_1_1:153925101-153925347:-|nuORF ENST00000467860.1_1_1:153925101-153925347:-|nuORF ENST00000467860.1_1_1:153925101-153925347:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.30712890625 2 528.766474 1055.5184 0.82267 0.000435 -1.3889 -0.0007344 -0.56622 -0.0002994 528.7658717538525 102.06 0.18977 95.889 95.814 96.003 -6.1757 15 8 3 0 0 0 0.46577 1 68550 68550 9.3474 0.75416 1 11991000 33349 13792 22258 22671 39198 39198 -0.007142720441152051 LLPTDNLDL 9 Unmodified _LLPTDNLDL_ 0 0 0 ENST00000481721.1_1_2:162480980-162567175:+|nuORF ENST00000481721.1_1_2:162480980-162567175:+|nuORF ENST00000481721.1_1_2:162480980-162567175:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7166442871094 2 507.279315 1012.54408 NaN NaN NaN NaN NaN NaN NaN 55.636 1 55.636 55.136 56.136 0 0 0 0 0.43505 1 30914 30914 18.135 0 1 33350 14088 22259 22672 39199 39199 0.03830617003529824 LLPTRLAWAS 10 Unmodified _LLPTRLAWAS_ 0 0 0 ENST00000495165.5_1_1:177901892-177902386:-|nuORF;ENST00000466953.6_1_1:177901892-177902386:-|nuORF ENST00000495165.5_1_1:177901892-177902386:-|nuORF ENST00000495165.5_1_1:177901892-177902386:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3270263671875 2 564.332216 1126.64988 1.0021 0.0005655 -4.1354 -0.0023337 -3.1333 -0.0017682 564.3298905454748 58.503 0.8219 58.442 58.038 58.86 -0.060719 115 41 4 0 0 0 0.16361 1 31688 31688 38.176 9.094 1 53663000 33351 13764 22260 22673 39200 39200 0.09161997639625952 LLPVLILIVKK 11 Unmodified _LLPVLILIVKK_ 0 0 0 nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML nc|ENSG00000160593|Q86YT9-4|JAML nc|ENSG00000160593|Q86YT9-4|JAML MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.9536743164062 2 624.95451 1247.89447 NaN NaN NaN NaN NaN NaN NaN 89.808 1 89.808 89.308 90.308 0 0 0 0 0.9435 1 49688 49688 0 0 1 33352 6737 22261 22674 39201 39201 0.2804348340073375 LLPVLVHTF 9 Unmodified _LLPVLVHTF_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8209228515625 2 519.820953 1037.62735 0.27548 0.0001432 0.13433 6.9825E-05 0.40981 0.00021303 519.8208499062603 79.282 0.28487 79.337 79.21 79.495 0.05497 27 10 3 0 0 0 0.0086179 1 43790 43790 89.427 0 1 6683900 33353 8295 22262 22675 39202 39202 0.11004398242016578 LLPVLVHTF 9 Unmodified _LLPVLVHTF_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8207397460938 2 519.820953 1037.62735 1.4363 0.00074663 0.20392 0.000106 1.6402 0.00085263 519.8209997697297 96.669 0.26801 90.493 90.354 90.622 -6.1757 35 15 3 0 0 0 0.010877 2 64029 64029;64150 77.984 0 1 37367000 33354 8295 22262 22675 39203;39204 39203 0.11004398242016578 LLPVNAWLLLN 11 Unmodified _LLPVNAWLLLN_ 0 0 0 ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5918273925781 3 422.592058 1264.75434 -0.23483 -9.9236E-05 0.49415 0.00020883 0.25933 0.00010959 422.5924760034265 45.259 0.11899 45.259 45.17 45.288 0 6 5 2 0 0 0 0.73992 1 24643 24643 0.50596 0 1 3279800 33355 5146 22263 22676 39205 39205 0.13255699396381715 LLPVQDQAQG 10 Unmodified _LLPVQDQAQG_ 0 0 0 REV__ENST00000529456.1_1_8:7206639-7212429:-|nuORF REV__ENST00000529456.1_1_8:7206639-7212429:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.78662109375 2 534.787838 1067.56112 NaN NaN NaN NaN NaN NaN NaN 33.62 1 29.635 29.135 30.135 -3.9853 0 0 0 0.71157 1 19295 19295 16.149 2.6412 1 + 33356 28423 22264 22677 39206 39206 0.03004537609331237 LLPWAPLSLR 10 Unmodified _LLPWAPLSLR_ 0 0 0 ENSG00000071967|ENST00000321348|CYBRD1;nc|ENSG00000071967|Q53TN4-3|CYBRD1 ENSG00000071967|ENST00000321348|CYBRD1 ENSG00000071967|ENST00000321348|CYBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2430725097656 3 389.241248 1164.70191 0.19403 7.5523E-05 2.1798 0.00084848 2.3739 0.00092401 389.24197531569445 61.868 0.54464 61.836 61.711 62.256 -0.032787 66 27 4 0 0 0 0.71042 1 33804 33804 1.7423 1.1154 1 20334000 33357 1065 22265 22678 39207 39207 0.1261516105339524 LLQAPRRLL 9 Unmodified _LLQAPRRLL_ 0 0 0 REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3572998046875 2 540.356025 1078.6975 0.4327 0.00023381 1.1899 0.00064297 1.6226 0.00087678 540.3568420419243 93.573 0.15219 87.397 87.334 87.486 -6.1757 13 8 2 0 0 0 0.078314 1 61968 61968 50.855 6.448 1 10630000 + 33358 28232 22266 22679 39208 39208 0.16129696630491708 LLQCACPGYL 10 Unmodified _LLQCACPGYL_ 0 0 0 ENSG00000178694|ENST00000314622|NSUN3 ENSG00000178694|ENST00000314622|NSUN3 ENSG00000178694|ENST00000314622|NSUN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7643432617188 2 540.764463 1079.51437 0.24362 0.00013174 -1.0681 -0.00057759 -0.82448 -0.00044585 540.7647369673856 40.238 0.55146 39.941 39.668 40.22 -0.29716 84 25 4 0 0 0 0.60623 1 21205 21205 10.824 0.64053 1 23033000 33359 8766 22267 22680 39209 39209 -0.022203615378430186 LLQDIILQV 9 Unmodified _LLQDIILQV_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.312255859375 2 527.828975 1053.6434 1.3003 0.00068633 -0.2412 -0.00012731 1.0591 0.00055901 527.8285876150322 100.04 0.13232 93.867 93.792 93.924 -6.1757 13 8 2 0 0 0 0.032564 1 66784 66784 61.357 15.337 1 21804000 33360 316 22268 22681 39210 39210 0.11872059688289482 LLQDKQFEL 9 Unmodified _LLQDKQFEL_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3124389648438 2 567.313689 1132.61282 -0.26654 -0.00015121 -0.5598 -0.00031758 -0.82633 -0.00046879 567.3133778216854 55.935 0.13548 55.935 55.892 56.028 0 10 7 2 0 0 0 0.10247 1 31095 31095 32.786 4.2988 1 2815000 33361 7544 22269 22682 39211 39211 0.05182281303223135 LLQDRLVSV 9 Unmodified _LLQDRLVSV_ 0 0 0 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7646484375 2 521.816399 1041.61824 0.49618 0.00025892 0.55112 0.00028759 1.0473 0.0005465 521.8168021646634 52.273 0.23331 51.84 51.709 51.942 -0.43367 28 11 3 0 0 0 0.060214 1 28196 28196 45.74 15.103 1 5296600 33362 2335 22270 22683 39212 39212 0.09910004885705348 LLQDRLVSV 9 Unmodified _LLQDRLVSV_ 0 0 0 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4;ENSG00000105559|ENST00000263265|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.27197265625 2 521.816399 1041.61824 1.5531 0.00081044 -0.33018 -0.00017229 1.2229 0.00063815 521.8158371630451 58.749 0.37629 52.675 52.492 52.868 -6.0745 33 20 2 0 0 0 0.089683 1 37646 37646 46.022 18.394 1 15651000 33363 2335 22270 22683 39213 39213 0.09910004885705348 LLQEICNL 8 Unmodified _LLQEICNL_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20221201_MKP_PDAC_01 4 473.2559509277344 2 473.257328 944.500103 NaN NaN NaN NaN NaN NaN NaN 97.238 1 91.062 90.562 91.562 -6.1757 0 0 0 0.77249 1 64445 64445 24.674 0 1 33364 358 22271 22684 39214 39214 0.025633093055375866 LLQGLIFVY 9 Unmodified _LLQGLIFVY_ 0 0 0 REV__ENSG00000173930|ENST00000310954|SLCO4C1 REV__ENSG00000173930|ENST00000310954|SLCO4C1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 355.8555297851562 3 355.882949 1064.62702 0.58337 0.00020761 1.0095 0.00035927 1.5929 0.00056688 356.21761413454954 25.441 0.44408 22.558 22.338 22.782 -2.8831 33 24 2 0 0 0 0.21874 1 13836 13836 1.1933 0 1 1650400 + 33365 22760 22272 22685 39215 39215 0.09728978522184661 LLQKHMVKI 9 Unmodified _LLQKHMVKI_ 0 0 0 REV__nc|ENSG00000132254|P53365-2|ARFIP2 REV__nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.5677185058594 3 370.566967 1108.67907 1.5473 0.00057338 0.28077 0.00010404 1.8281 0.00067742 370.56710592586705 83.857 0.619 77.682 77.345 77.964 -6.1757 46 32 2 0 0 0 0.57757 1 55095 55095 2.7352 0 1 9172600 + 33366 19835 22273 22686 39216 39216 0.12907818664302795 LLQKIERSAQ 10 Unmodified _LLQKIERSAQ_ 0 0 0 REV__ENSG00000167971|ENST00000343516|CASKIN1 REV__ENSG00000167971|ENST00000343516|CASKIN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.56689453125 3 395.903183 1184.68772 -0.59896 -0.00023713 3.0186 0.0011951 2.4197 0.00095795 395.90435973523205 55.946 0.14197 55.877 55.839 55.981 -0.068741 10 7 2 0 0 0 0.23047 1 30406 30406 14.957 4.8066 1 3169200 + 33367 22268 22274 22687 39217 39217 0.1027646383447518 LLQKKPNWAT 10 Unmodified _LLQKKPNWAT_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MSMS AL20221201_MKP_PDAC_01 4 400.2381286621094 3 400.236274 1197.68699 NaN NaN NaN NaN NaN NaN NaN 106.65 1 100.48 99.977 100.98 -6.1757 0 0 0 0.99091 1 71381 71381 0.69767 0.07084 1 33368 9420 22275 22688 39218 39218 0.0960566918540735 LLQLLKLIF 9 Unmodified _LLQLLKLIF_ 0 0 0 ENST00000344691.8_1_21:36260099-36260198:-|nuORF ENST00000344691.8_1_21:36260099-36260198:-|nuORF ENST00000344691.8_1_21:36260099-36260198:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.8781127929688 2 550.875728 1099.7369 NaN NaN NaN NaN NaN NaN NaN 69.868 1 69.868 69.368 70.368 0 0 0 0 0.85737 1 38923 38923 0.6015 0 1 33369 12019 22276 22689 39219 39219 0.19102403861370476 LLQMFMPFG 9 Unmodified _LLQMFMPFG_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2394409179688 2 542.271924 1082.52929 NaN NaN NaN NaN NaN NaN NaN 90.977 1 90.483 89.983 90.983 -0.49457 0 0 0 0.84369 1 49735 49735 2.3027 0 1 33370 5989 22277 22690 39220 39220 -0.008668696698123313 LLQNNLPAV 9 Unmodified _LLQNNLPAV_ 0 0 0 ENSG00000150753|ENST00000280326|CCT5;nc|ENSG00000150753|P48643-2|CCT5;ENST00000509846.1_1_5:10258500-10261038:+|nuORF;ENST00000423695.6_1_5:10250480-10261980:+|nuORF ENSG00000150753|ENST00000280326|CCT5 ENSG00000150753|ENST00000280326|CCT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2904663085938 2 491.290017 980.565481 0.47783 0.00023475 -0.39461 -0.00019387 0.083221 4.0885E-05 491.2900491778722 59.278 0.32094 58.788 58.625 58.946 -0.49079 26 14 3 0 0 0 0.040472 1 32214 32214 49.669 11.695 1 2136500 33371 6071 22278 22691 39221 39221 0.07442046822893644 LLQNTHTDS 9 Unmodified _LLQNTHTDS_ 0 0 0 REV__ENSG00000181718|ENST00000641661|OR5T2 REV__ENSG00000181718|ENST00000641661|OR5T2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7535400390625 2 514.753995 1027.49344 0.37114 0.00019105 -1.0917 -0.00056194 -0.72053 -0.0003709 514.7535042963758 90.795 0.51251 90.3 90.074 90.586 -0.49458 90 34 3 0 0 0 0.56862 1 49550 49550 3.2813 0 1 11461000 + 33372 22654 22279 22692 39222 39222 -0.019209123214750434 LLQNWAESV 9 Unmodified _LLQNWAESV_ 0 0 0 ENSG00000153093|ENST00000439055|ACOXL;nc|ENSG00000153093|Q9NUZ1-2|ACOXL;nc|ENSG00000153093|Q9NUZ1|ACOXL ENSG00000153093|ENST00000439055|ACOXL ENSG00000153093|ENST00000439055|ACOXL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7805786132812 2 530.277106 1058.53966 0.24331 0.00012902 0.18081 9.5881E-05 0.42412 0.0002249 530.2771631645103 58.038 0.18788 57.548 57.471 57.659 -0.48974 14 8 2 0 0 0 0.19298 1 31537 31537 13.508 13.508 1 3307600 33373 6237 22280 22693 39223 39223 0.012731525806202626 LLQPCSSVDAR 11 Unmodified _LLQPCSSVDAR_ 0 0 0 ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENSG00000206190|ENST00000555815|ATP10A ENSG00000206190|ENST00000555815|ATP10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.55126953125 3 396.872895 1187.59686 -0.056908 -2.2585E-05 0.57031 0.00022634 0.5134 0.00020376 396.87316005661467 45.538 0.29992 45.51 45.381 45.681 -0.028011 49 15 4 0 0 0 0.56638 1 24396 24396 10.315 2.7063 1 49234000 33374 10395 22281 22694 39224 39224 0.010562517946709704 LLQPSSEYFPL 11 Unmodified _LLQPSSEYFPL_ 0 0 0 REV__ENST00000471636.5_1_22:38522531-38565433:-|nuORF REV__ENST00000471636.5_1_22:38522531-38565433:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 647.01171875 2 647.339904 1292.66525 NaN NaN NaN NaN NaN NaN NaN 98.012 1 91.836 91.336 92.336 -6.1757 0 0 0 0.63856 1 64970 64970 19.362 7.7216 1 + 33375 27496 22282 22695 39225 39225 0.030628196461748303 LLQQGVLE 8 Unmodified _LLQQGVLE_ 0 0 0 nc|ENSG00000022840|Q8N5U6-2|RNF10 nc|ENSG00000022840|Q8N5U6-2|RNF10 nc|ENSG00000022840|Q8N5U6-2|RNF10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.8870544433594 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 20.157 1 20.185 19.685 20.685 0.028357 0 0 0 0.97444 1 10194 10194 0.79363 0 1 33376 16022 22283 22696 39226 39226 0.059066690402460154 LLQRRQRLQL 10 Unmodified _LLQRRQRLQL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.4213256835938 2 662.42022 1322.82589 1.1753 0.00077855 1.9225 0.0012735 3.0978 0.002052 662.4208707750117 100.96 0.081352 94.786 94.734 94.815 -6.1757 11 4 3 0 0 0 0.54684 1 67662 67662 13.906 2.4113 1 28306000 33377 10865 22284 22697 39227 39227 0.17738631873612576 LLQSRHQLL 9 Unmodified _LLQSRHQLL_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8929138183594 3 369.892619 1106.65603 0.079016 2.9227E-05 0.77698 0.0002874 0.85599 0.00031663 369.8930459059838 31.763 0.1729 31.634 31.526 31.699 -0.12915 11 6 2 0 0 0 0.40476 1 16546 16546 12.241 0 1 1338000 + 33378 17359 22285 22698 39228 39228 0.10696515871177326 LLQTQPHCL 9 Unmodified _LLQTQPHCL_ 0 0 0 ENST00000478021.1_1_17:27071956-27072468:+|nuORF ENST00000478021.1_1_17:27071956-27072468:+|nuORF ENST00000478021.1_1_17:27071956-27072468:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7801513671875 2 526.781502 1051.54845 NaN NaN NaN NaN NaN NaN NaN 62.777 1 62.291 61.791 62.791 -0.48617 0 0 0 0.57317 1 34222 34222 13.508 0.97634 1 33379 14008 22286 22699 39229 39229 0.024738029454283605 LLQTRRLLL 9 Unmodified _LLQTRRLLL_ 0 0 0 REV__ENSG00000255181|ENST00000542437|CCDC166 REV__ENSG00000255181|ENST00000542437|CCDC166 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.8807678222656 3 375.920397 1124.73936 1.1171 0.00041994 -0.18944 -7.1212E-05 0.92766 0.00034873 375.92047620955043 45.561 0.29483 40.606 40.45 40.745 -4.9549 28 19 2 0 0 0 0.19994 1 27943 27943 12.241 0 1 7885200 + 33380 24532 22287 22700 39230 39230 0.18198252319029962 LLQVGKRLLIE 11 Unmodified _LLQVGKRLLIE_ 0 0 0 REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2 REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.4170532226562 2 641.41628 1280.81801 1.39 0.00089158 0.18957 0.00012159 1.5796 0.0010132 641.4158199749974 105.79 0.92021 99.61 99.416 100.34 -6.1757 343 124 5 0 0 0 0.74203 1 70811 70811 0.30703 0 1 46385000 + 33381 17203 22288 22701 39231 39231 0.18883059833501648 LLQWPPPRL 9 Unmodified _LLQWPPPRL_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-3|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8930053710938 3 373.89396 1118.66005 0.11654 4.3573E-05 -1.2148 -0.00045419 -1.0982 -0.00041061 373.89320043277854 21.99 0.14425 22.004 21.919 22.063 0.013796 13 5 3 0 0 0 0.4887 1 11302 11302 8.1555 0 1 1242000 33382 9912;13372 22289 22702 39232 39232 0.10546605364879724 LLQWVISSN 9 Unmodified _LLQWVISSN_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2955932617188 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 88.084 1 88.084 87.584 88.584 0 0 0 0 0.85852 1 48763 48763 0.45834 0 1 33383 6153 22290 22703 39233 39233 0.049100294773325004 LLRAPVPLRRG 11 Unmodified _LLRAPVPLRRG_ 0 0 0 REV__ENST00000603864.5_1_12:51663522-51663705:-|nuORF REV__ENST00000603864.5_1_12:51663522-51663705:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.40625 2 624.406581 1246.79861 NaN NaN NaN NaN NaN NaN NaN 18.946 1 18.952 18.452 19.452 0.0060463 0 0 0 0.9435 1 9621 9621 0 0 1 + 33384 29279 22291 22704 39234 39234 0.18508148333171448 LLRARIAAT 9 Unmodified _LLRARIAAT_ 0 0 0 ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENST00000413911.1_1_2:191745560-191746172:-|nuORF ENST00000413911.1_1_2:191745560-191746172:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.8184204101562 2 492.819276 983.623999 NaN NaN NaN NaN NaN NaN NaN 0.44345 1 -2.0385 -2.5385 -1.5385 -2.482 0 0 0 0.85798 1 235 235 0.52476 0 1 33385 13005 22292 22705 39235 39235 0.13153148188007435 LLRARQPPRL 10 Unmodified _LLRARQPPRL_ 0 0 0 REV__nc|ENSG00000237441|O15211-2|RGL2 REV__nc|ENSG00000237441|O15211-2|RGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3916015625 2 610.390931 1218.76731 1.4903 0.00090967 0.036663 2.2379E-05 1.527 0.00093205 610.3906388971533 105.08 0.26503 98.908 98.76 99.025 -6.1757 148 37 6 0 0 0 0.72247 1 70450 70450 0.40072 0.093686 1 11944000000 + 33386 24432 22293 22706 39236 39236 0.16667575299129567 LLRARQPPRL 10 Unmodified _LLRARQPPRL_ 0 0 0 REV__nc|ENSG00000237441|O15211-2|RGL2 REV__nc|ENSG00000237441|O15211-2|RGL2 MSMS AL20221201_MKP_PDAC_01 4 610.3930053710938 2 610.390931 1218.76731 NaN NaN NaN NaN NaN NaN NaN 105.73 1 99.551 99.051 100.05 -6.1757 0 0 0 1.0024 1 70821 70821 0.40072 0.050084 1 + 33387 24432 22293 22706 39237 39237 0.16667575299129567 LLRAWPRGP 9 Unmodified _LLRAWPRGP_ 0 0 0 ENSG00000157184|ENST00000371486|CPT2;ENST00000468572.2_2_1:53662615-53668106:+|nuORF ENSG00000157184|ENST00000371486|CPT2 ENSG00000157184|ENST00000371486|CPT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8662414550781 3 355.882054 1064.62433 -0.11482 -4.0861E-05 -3.4003 -0.0012101 -3.5151 -0.001251 355.88107504240037 29.841 0.23606 29.871 29.734 29.97 0.030106 10 8 2 0 0 0 0.21493 1 15523 15523 4.897 0 1 1242500 33388 6505 22294 22707 39238 39238 0.09460567907876793 LLRDEELIL 9 Unmodified _LLRDEELIL_ 0 0 0 REV__nc|ENSG00000070366|Q86US8-3|SMG6 REV__nc|ENSG00000070366|Q86US8-3|SMG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3292236328125 2 557.329339 1112.64412 NaN NaN NaN NaN NaN NaN NaN 46.415 1 46.078 45.578 46.578 -0.33664 0 0 0 0.26013 1 24842 24842 36.127 12.979 1 + 33389 17468 22295 22708 39239 39239 0.0923085433732922 LLRDNLTLWT 10 Unmodified _LLRDNLTLWT_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000399764.3_1_9:34922183-34922564:-|nuORF ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000175793|P31947-2|SFN;ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.8538208007812 2 622.853512 1243.69247 0.305 0.00018997 0.14202 8.8458E-05 0.44702 0.00027843 622.8535788466725 69.551 0.35637 69.551 69.377 69.734 0 52 16 4 0 0 0 0.43662 2 38801 38702;38801 22.736 1.3743 1 5510000 33390 4588;4050;2621;7941;8542 22296 22709 39240;39241 39241 0.0803734797721063 LLREHVRLVHA 11 Unmodified _LLREHVRLVHA_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2747802734375 3 448.273722 1341.79934 NaN NaN NaN NaN NaN NaN NaN 36.685 1 36.706 36.206 37.206 0.021545 0 0 0 0.94181 1 19445 19445 1.2148 0.76031 1 33391 448 22297 22710 39242 39242 0.1421094298227672 LLRFLHFP 8 Unmodified _LLRFLHFP_ 0 0 0 REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8130493164062 2 521.813462 1041.61237 -0.24021 -0.00012535 -1.3505 -0.00070471 -1.5907 -0.00083006 521.812863583692 36.061 0.59185 36.086 35.885 36.477 0.024967 86 26 5 0 0 0 0.80624 1 19247 19247 2.8892 0 1 388370000 + 33392 17166 22298 22711 39243 39243 0.09322951164699589 LLRGIPITDF 10 Unmodified _LLRGIPITDF_ 0 0 0 REV__ENSG00000121270|ENST00000356608|ABCC11 REV__ENSG00000121270|ENST00000356608|ABCC11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1624450683594 3 382.229008 1143.66519 NaN NaN NaN NaN NaN NaN NaN 15.986 1 15.986 15.486 16.486 0 0 0 0 1.0048 1 7753 7753 0.13989 0 1 + 33393 19283 22299 22712 39244 39244 0.0991086443682434 LLRGITENV 9 Unmodified _LLRGITENV_ 0 0 0 nc|ENSG00000165983|Q96BW5-2|PTER;ENSG00000165983|ENST00000535784|PTER nc|ENSG00000165983|Q96BW5-2|PTER nc|ENSG00000165983|Q96BW5-2|PTER MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8013000488281 2 507.800749 1013.58694 1.3434 0.0006822 0.25353 0.00012874 1.597 0.00081095 507.8011733560828 58.922 0.44616 52.848 52.547 52.993 -6.0745 51 24 3 0 0 0 0.10247 2 37841 37709;37841 32.786 0 1 16067000 33394 7416 22300 22713 39245;39246 39246 0.08069431851617992 LLRKFDQF 8 Unmodified _LLRKFDQF_ 0 0 0 REV__nc|ENSG00000136286|B0I1T2-4|MYO1G REV__nc|ENSG00000136286|B0I1T2-4|MYO1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8054809570312 2 533.805834 1065.59712 0.97442 0.00052015 0.014322 7.6451E-06 0.98874 0.00052779 533.8057135068715 49.704 0.27121 49.655 49.512 49.784 -0.048824 34 13 3 0 0 0 0.79783 1 26939 26939 7.9102 0 1 12849000 + 33395 20155 22301 22714 39247 39247 0.06694039576859723 LLRKILLRKFC 11 Unmodified _LLRKILLRKFC_ 0 0 0 nc|ENSG00000050628|P43115-12|PTGER3;nc|ENSG00000050628|P43115-3|PTGER3;nc|ENSG00000050628|P43115-4|PTGER3;nc|ENSG00000050628|P43115-2|PTGER3;ENSG00000050628|ENST00000306666|PTGER3;nc|ENSG00000050628|P43115-7|PTGER3;nc|ENSG00000050628|P43115-8|PTGER3;nc|ENSG00000050628|P43115-9|PTGER3;nc|ENSG00000050628|P43115-5|PTGER3;nc|ENSG00000050628|P43115-11|PTGER3;nc|ENSG00000050628|P43115-6|PTGER3;nc|ENSG00000050628|P43115-10|PTGER3 nc|ENSG00000050628|P43115-12|PTGER3 nc|ENSG00000050628|P43115-12|PTGER3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 701.9578247070312 2 701.957592 1401.90063 NaN NaN NaN NaN NaN NaN NaN 15.049 1 15.035 14.535 15.535 -0.014067 0 0 0 0.9435 1 7364 7364 0 0 1 33396 16030 22302 22715 39248 39248 0.2157567836063663 LLRKKRRIFIH 11 Unmodified _LLRKKRRIFIH_ 0 0 0 ENSG00000255501|ENST00000530950|CARD18 ENSG00000255501|ENST00000530950|CARD18 ENSG00000255501|ENST00000530950|CARD18 MSMS AL20221201_MKP_PDAC_01 4 493.9983825683594 3 493.996412 1478.96741 NaN NaN NaN NaN NaN NaN NaN 55.694 1 49.773 49.273 50.273 -5.9211 0 0 0 0.94148 1 35480 35480 1.4551 0.94916 1 33397 10791 22303 22716 39249 39249 0.24708049966716317 LLRKPNPL 8 Unmodified _LLRKPNPL_ 0 0 0 REV__nc|ENSG00000156299|Q13009-2|TIAM1 REV__nc|ENSG00000156299|Q13009-2|TIAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.8118286132812 2 475.810919 949.607286 0.68354 0.00032524 -0.23691 -0.00011272 0.44663 0.00021251 475.81099711445114 38.888 0.31619 34.437 34.316 34.632 -4.4509 31 19 2 0 0 0 0.67481 1 23031 23031 19.439 0 1 7808600 + 33398 29720 22304 22717 39250 39250 0.13046647302076053 LLRKRELL 8 Unmodified _LLRKRELL_ 0 0 0 REV__nc|ENSG00000107968|P41279-2|MAP3K8 REV__nc|ENSG00000107968|P41279-2|MAP3K8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.290771484375 2 520.850576 1039.6866 1.4093 0.00073401 -0.79582 -0.0004145 0.61344 0.00031951 520.8502322140343 95.903 0.18719 89.727 89.63 89.817 -6.1757 17 10 2 0 0 0 8.7369 1 63477 63477 11.114 0 1 30048000 + 33399 18590 22305 22718 39251 39251 0.16834294256227622 LLRLELAEMKE 11 Unmodified _LLRLELAEMKE_ 0 0 0 ENSG00000214114|ENST00000397572|MYCBP;ENST00000495043.5_1_1:39330344-39338774:-|nuORF;ENST00000465771.3_1_1:39330344-39338266:-|nuORF ENSG00000214114|ENST00000397572|MYCBP ENSG00000214114|ENST00000397572|MYCBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.8811645507812 2 672.881413 1343.74827 NaN NaN NaN NaN NaN NaN NaN 16.059 1 16.064 15.564 16.564 0.0050564 0 0 0 0.9435 1 8034 8034 0 0 1 33400 10482 22306 22719 39252 39252 0.0901481310249892 LLRLLLPFL 9 Unmodified _LLRLLLPFL_ 0 0 0 REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.377685546875 2 549.375895 1096.73724 NaN NaN NaN NaN NaN NaN NaN 100.81 1 100.76 100.26 101.26 -0.04216 0 0 0 0.84369 1 56000 56000 2.3027 0 1 + 33401 18967 22307 22720 39253 39253 0.19273823581215765 LLRLPQQKS 9 Unmodified _LLRLPQQKS_ 0 0 0 ENST00000396954.7_1_5:52405227-52405491:-|nuORF ENST00000396954.7_1_5:52405227-52405491:-|nuORF ENST00000396954.7_1_5:52405227-52405491:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.4312744140625 3 361.560869 1081.66078 0.26002 9.4013E-05 0.24813 8.9715E-05 0.50815 0.00018373 361.560847702816 39.851 0.39718 39.856 39.585 39.982 0.0050583 25 18 2 0 0 0 0.21822 1 21144 21144 0.96228 0.69326 1 621940 33402 12812 22308 22721 39254 39254 0.1232140001393418 LLRMVVLH 8 Unmodified _LLRMVVLH_ 0 0 0 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8077392578125 2 490.807322 979.600092 0.44959 0.00022066 1.2138 0.00059576 1.6634 0.00081642 490.80760987075803 51.819 0.28297 51.76 51.592 51.875 -0.058918 32 13 4 0 0 0 0.78849 1 28041 28041 9.3474 0 1 4053900 + 33403 19583 22309 22722 39255 39255 0.1094759143002193 LLRNEEHLK 9 Unmodified _LLRNEEHLK_ 0 0 0 REV__TNIP2|p.Q207H|1|0.17|ENSG00000168884|chr4:2745482-2745482|C/A|missense_variant REV__TNIP2|p.Q207H|1|0.17|ENSG00000168884|chr4:2745482-2745482|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5555725097656 3 384.555895 1150.64586 NaN NaN NaN NaN NaN NaN NaN 25.721 1 25.704 25.204 26.204 -0.017006 0 0 0 0.82739 1 13198 13198 2.4985 0 1 + 33404 30121 22310 22723 39256 39256 0.07655908145943613 LLRNEFLK 8 Unmodified _LLRNEFLK_ 0 0 0 ENST00000532168.2_1_11:112162369-112162465:+|nuORF ENST00000532168.2_1_11:112162369-112162465:+|nuORF ENST00000532168.2_1_11:112162369-112162465:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.813720703125 2 516.813659 1031.61277 1.1737 0.00060658 -1.1973 -0.00061881 -0.023664 -1.223E-05 516.8127737529841 91.966 0.37544 85.79 85.53 85.906 -6.1757 51 21 3 0 0 0 0.32798 1 60811 60811 52.268 0 1 25208000 33405 14925 22311 22724 39257 39257 0.09822326093899392 LLRPALALI 9 Unmodified _LLRPALALI_ 0 0 0 REV__ENSG00000114735|ENST00000232854|HEMK1 REV__ENSG00000114735|ENST00000232854|HEMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.337646484375 2 490.33677 978.658987 0.88507 0.00043398 -0.016982 -8.327E-06 0.86809 0.00042565 490.3367297758868 90.495 0.55079 90.537 90.272 90.823 0.042175 58 19 4 0 0 0 0.14602 1 50463 50463 28.487 3.0875 1 174900000 + 33406 18928 22312 22725 39258 39258 0.16880390995981998 LLRPGVLLA 9 Unmodified _LLRPGVLLA_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.3226318359375 2 476.32112 950.627687 0.92885 0.00044243 0.34361 0.00016367 1.2725 0.0006061 476.32137366105866 66.048 0.34913 66.058 65.873 66.222 0.0095596 54 17 4 0 0 0 0.070838 1 36177 36177 39.957 1.9833 1 45957000 + 33407 19183 22313 22726 39259 39259 0.15039817961894641 LLRPPLVLL 9 Unmodified _LLRPPLVLL_ 0 0 0 REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7633666992188 2 517.360245 1032.70594 1.0564 0.00054656 0.27952 0.00014461 1.336 0.00069118 517.360229305507 99.984 0.21623 93.808 93.74 93.957 -6.1757 17 14 2 0 0 0 0.1474 1 66742 66742 21.747 4.8044 1 12968000 + 33408 28261 22314 22727 39260 39260 0.1908925054710835 LLRQMEGIY 9 Unmodified _LLRQMEGIY_ 0 0 0 ENST00000577812.5_1_17:80442656-80446030:+|nuORF;nc|ENSG00000141562|Q9UHQ1-4|NARF;nc|ENSG00000141562|Q9UHQ1-3|NARF;ENSG00000141562|ENST00000309794|NARF;nc|ENSG00000141562|Q9UHQ1-2|NARF ENST00000577812.5_1_17:80442656-80446030:+|nuORF ENST00000577812.5_1_17:80442656-80446030:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.3378295898438 2 561.802434 1121.59032 1.2318 0.00069205 -4.1397 -0.0023257 -2.9078 -0.0016336 561.7996676662349 95.095 0.25858 88.919 88.711 88.969 -6.1757 22 13 2 0 0 0 0.19298 1 63003 63003 8.5933 2.2392 1 9776000 33409 5352 22315 22728 39261 39261 0.034383586339799876 LLRRAMAY 8 Unmodified _LLRRAMAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2614135742188 2 497.286754 992.558955 NaN NaN NaN NaN NaN NaN NaN 85.015 1 84.513 84.013 85.013 -0.5015 0 0 0 0.9706 1 46518 46518 6.3541 0.59368 1 33410 2210 22316 22729 39262 39262 0.062378303905234134 LLRRGKKRP 9 Unmodified _LLRRGKKRP_ 0 0 0 ENST00000478951.5_1_3:111717741-111717960:+|nuORF;ENST00000393917.6_1_3:111717741-111718122:+|nuORF ENST00000478951.5_1_3:111717741-111717960:+|nuORF ENST00000478951.5_1_3:111717741-111717960:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.4071044921875 2 562.380366 1122.74618 NaN NaN NaN NaN NaN NaN NaN 78.49 1 78.004 77.504 78.504 -0.48596 0 0 0 0.84369 1 42990 42990 2.3027 0 1 33411 12720 22317 22730 39263 39263 0.1897160999026255 LLRRKIQQP 9 Unmodified _LLRRKIQQP_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5835571289062 3 384.583897 1150.72986 -0.042367 -1.6294E-05 -0.55305 -0.00021269 -0.59541 -0.00022899 384.58335434091214 35.068 0.47342 35.096 34.796 35.27 0.027401 47 21 4 0 0 0 0.53557 1 18595 18595 5.2969 0 1 27442000 33412 665 22318 22731 39264 39264 0.16052484033502878 LLRRRRRRWRR 11 Unmodified _LLRRRRRRWRR_ 0 0 0 REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 840.5377197265625 2 840.540723 1679.06689 NaN NaN NaN NaN NaN NaN NaN 98.846 1 98.653 98.153 99.153 -0.19321 0 0 0 0.9435 1 53973 53973 0 0 1 + 33413 25813 22319 22732 39265 39265 0.25452305424005317 LLRRRRRWLFW 11 Unmodified _LLRRRRRWLFW_ 0 0 0 REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF REV__ENST00000368742.3_1_1:153234210-153234426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 829.5048217773438 2 829.504952 1656.99535 NaN NaN NaN NaN NaN NaN NaN 66.406 1 66.406 65.906 66.906 0 0 0 0 0.94301 1 37038 37038 0.35063 0.35063 1 + 33414 26020 22320 22733 39266 39266 0.19313372946817253 LLRRVPRRL 9 Unmodified _LLRRVPRRL_ 0 0 0 REV__ENST00000302351.8_1_5:73936169-73936514:-|nuORF REV__ENST00000302351.8_1_5:73936169-73936514:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1178.96142578125 1 1178.79565 1177.78838 1.4882 0.0017543 -3.3949 -0.0040019 -1.9066 -0.0022475 1178.793505339633 47.014 0.23863 46.98 46.814 47.052 -0.033417 12 11 2 0 0 0 0.61256 1 25357 25357 0.6015 0.14316 1 4290300 + 33415 25330 22321 22734 39267 39267 0.20659585398630043 LLRTAATI 8 Unmodified _LLRTAATI_ 0 0 0 nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1 nc|ENSG00000147133|P21675-15|TAF1 nc|ENSG00000147133|P21675-15|TAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.7741088867188 2 429.774003 857.533452 0.64113 0.00027554 -1.6451 -0.000707 -1.0039 -0.00043146 429.7731490240965 44.108 0.43567 39.343 39.066 39.502 -4.7648 36 29 2 0 0 0 0.46677 1 26831 26831 37.974 0 1 22779000 33416 16257 22322 22735 39268 39268 0.09898679139746491 LLRTAATI 8 Unmodified _LLRTAATI_ 0 0 0 nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-23|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-21|TAF1 nc|ENSG00000147133|P21675-15|TAF1 nc|ENSG00000147133|P21675-15|TAF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.774003 857.533452 0.42118 0.00018101 0.26788 0.00011513 0.68907 0.00029614 429.77412292991744 38.986 0.15578 38.986 38.903 39.059 0 -0.1399 0.00046716 NaN 37.974 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 779100 33417 16257 22322 22735 0.09898679139746491 LLRWLRRRLRL 11 Unmodified _LLRWLRRRLRL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 776.0185546875 2 776.015153 1550.01575 NaN NaN NaN NaN NaN NaN NaN 97.436 1 97.418 96.918 97.918 -0.018188 0 0 0 0.94301 1 54124 54124 0.35063 0.35063 1 33418 10865 22323 22736 39269 39269 0.2627454360660977 LLRWRWRWSRM 11 Unmodified _LLRWRWRWSRM_ 0 0 0 REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 823.456298828125 2 823.454071 1644.89359 NaN NaN NaN NaN NaN NaN NaN 69.811 1 69.332 68.832 69.832 -0.47903 0 0 0 0.94293 1 38164 38164 0.26902 0 1 + 33419 26750 22324 22737 39270 39270 0.09693758532716856 LLRWRWRWSRM 11 Unmodified _LLRWRWRWSRM_ 0 0 0 REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 823.45556640625 2 823.454071 1644.89359 NaN NaN NaN NaN NaN NaN NaN 77.389 1 71.213 70.713 71.713 -6.1757 0 0 0 0.94181 1 50619 50619 1.1933 0 1 + 33420 26750 22324 22737 39271 39271 0.09693758532716856 LLRWRWRWSRM 11 Unmodified _LLRWRWRWSRM_ 0 0 0 REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 823.4548950195312 2 823.454071 1644.89359 NaN NaN NaN NaN NaN NaN NaN 77.58 1 71.404 70.904 71.904 -6.1757 0 0 0 0.94181 1 50750 50750 1.1933 0 1 + 33421 26750 22324 22737 39272 39272 0.09693758532716856 LLRWWRVL 8 Unmodified _LLRWWRVL_ 0 0 0 ENST00000396720.7_1_19:48206015-48206201:+|nuORF ENST00000396720.7_1_19:48206015-48206201:+|nuORF ENST00000396720.7_1_19:48206015-48206201:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.2066345214844 3 381.237949 1140.69202 NaN NaN NaN NaN NaN NaN NaN 16.223 1 13.666 13.166 14.166 -2.557 0 0 0 0.97444 1 8388 8388 4.3292 0.13973 1 33422 12803 22325 22738 39273 39273 0.12730017838680396 LLRYLIRF 8 Unmodified _LLRYLIRF_ 0 0 0 nc|ENSG00000188848|Q6ZU67-5|BEND4;nc|ENSG00000188848|Q6ZU67-4|BEND4;nc|ENSG00000188848|Q6ZU67-3|BEND4;nc|ENSG00000188848|Q6ZU67-2|BEND4;ENSG00000188848|ENST00000502486|BEND4 nc|ENSG00000188848|Q6ZU67-5|BEND4 nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8912658691406 3 365.234205 1092.68079 1.5468 0.00056495 0.53883 0.0001968 2.0856 0.00076175 365.23421042842233 91.416 0.51489 85.24 84.994 85.509 -6.1757 48 28 2 0 0 0 8.7369 1 60423 60423 1.8442 0.6509 1 6851900 33423 9704 22326 22739 39274 39274 0.13815195744564335 LLSAACIVY 9 Unmodified _LLSAACIVY_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 952.5177612304688 1 952.517216 951.50994 0.63936 0.00060901 2.1798 0.0020763 2.8191 0.0026853 952.5193956053336 74.737 0.41233 74.261 74.02 74.432 -0.47588 30 16 2 0 0 0 0.12841 1 40934 40934 30.225 1.738 1 2439600 33424 9420 22327 22740 39275 39275 0.032244973109072816 LLSANPYII 9 Unmodified _LLSANPYII_ 0 0 0 REV__nc|ENSG00000105388|P06731-2|CEACAM5 REV__nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2945556640625 2 502.294768 1002.57498 1.4128 0.00070963 -1.1432 -0.00057423 0.26957 0.0001354 502.29424421767004 82.295 0.45286 82.357 82.103 82.556 0.062004 30 17 2 0 0 0 0.016184 1 45535 45535 67.344 5.9864 1 5727500 + 33425 18420 22328 22741 39276 39276 0.07379815108413368 LLSCHGGH 8 Unmodified _LLSCHGGH_ 0 0 0 ABHD15|p.R387C|1|0.13|ENSG00000168792|chr17:29562809-29562809|G/A|missense_variant ABHD15|p.R387C|1|0.13|ENSG00000168792|chr17:29562809-29562809|G/A|missense_variant ABHD15|p.R387C|1|0.13|ENSG00000168792|chr17:29562809-29562809|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7887268066406 2 412.197605 822.380657 0.31353 0.00012923 0.27061 0.00011154 0.58413 0.00024078 412.1976614145161 65.177 0.23615 64.693 64.555 64.791 -0.48428 16 10 2 0 0 0 8.7369 1 35543 35543 0.79363 0 1 656560 33426 5 22329 22742 39277 39277 -0.03763839528505741 LLSDFNSII 9 Unmodified _LLSDFNSII_ 0 0 0 REV__ADCY3|p.D958N|1|0.08|ENSG00000138031|chr2:24823220-24823220|C/T|missense_variant REV__ADCY3|p.D958N|1|0.08|ENSG00000138031|chr2:24823220-24823220|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 511.2833862304688 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 90.09 1 83.914 83.414 84.414 -6.1757 0 0 0 0.23581 1 59486 59486 28.487 5.3384 1 + 33427 16701 22330 22743 39278 39278 0.03970920866152028 LLSDTKLEL 9 Unmodified _LLSDTKLEL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.3033447265625 2 516.30279 1030.59103 0.18726 9.6683E-05 0.016236 8.3827E-06 0.2035 0.00010507 516.3025832472736 58.361 0.24628 57.87 57.759 58.005 -0.49079 18 11 2 0 0 0 0.13231 1 31733 31733 29.841 0.759 1 2176400 33428 597 22331 22744 39279 39279 0.07695476554636116 LLSDTKLEL 9 Unmodified _LLSDTKLEL_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.30279 1030.59103 0.46568 0.00024043 -1.0753 -0.00055518 -0.60962 -0.00031475 516.3023160881596 57.966 0.26019 57.966 57.817 58.078 0 0.047849 -0.00052264 NaN 29.841 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2171100 33429 597 22331 22744 0.07695476554636116 LLSDTVQHL 9 Unmodified _LLSDTVQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.5278930664062 2 513.284931 1024.55531 0.57852 0.00029695 0.26618 0.00013663 0.84471 0.00043358 513.2846338019912 45.893 0.19847 45.893 45.819 46.018 0 16 9 2 0 0 0 0.091436 1 25016 25016 41.84 9.5341 1 6805300 33430 7545 22332 22745 39280 39280 0.044014390976599316 LLSDWQFYL 9 Unmodified _LLSDWQFYL_ 0 0 0 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 REV__nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.8113403320312 2 592.802957 1183.59136 0.61586 0.00036508 -0.21883 -0.00012973 0.39703 0.00023536 592.8025343430224 82.712 1.7729 82.215 81.495 83.268 -0.49751 188 73 5 0 0 0 0.46577 1 44997 44997 9.3474 1.4373 1 74481000 + 33431 18034 22333 22746 39281 39281 0.006908962745228564 LLSEAPLF 8 Unmodified _LLSEAPLF_ 0 0 0 nc|ENSG00000126768|O60830-2|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.5033569335938 1 889.502946 888.49567 0.40281 0.0003583 0.32334 0.00028761 0.72614 0.00064591 889.5031438198296 101.25 0.10673 95.073 95.018 95.125 -6.1757 15 6 3 0 0 0 0.15234 1 67888 67888 86.121 7.6766 1 51347000 33432 16174 22334 22747 39282 39282 0.04696168154282532 LLSEILHLL 9 Unmodified _LLSEILHLL_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8325805664062 2 525.831517 1049.64848 3.6338 0.0019107 -1.2227 -0.00064294 2.4111 0.0012678 525.8305948954246 99.453 0.099197 99.417 99.352 99.452 -0.036301 6 3 2 0 0 0 0.47846 1 55254 55254 8.5933 0 1 2490100 33433 1143 22335 22748 39283 39283 0.12564363550905 LLSELYSYGL 10 Unmodified _LLSELYSYGL_ 0 0 0 REV__ENSG00000089723|ENST00000203664|OTUB2 REV__ENSG00000089723|ENST00000203664|OTUB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3092041015625 2 579.308072 1156.60159 0.43127 0.00024984 0.96102 0.00055673 1.3923 0.00080656 579.3086380188207 94.329 0.3075 93.908 93.743 94.05 -0.42044 36 16 3 0 0 0 0.52888 1 51499 51499 14.838 4.7643 1 993330 + 33434 17845 22336 22749 39284 39284 0.02955459209078981 LLSEMEESF 9 Unmodified _LLSEMEESF_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2771606445312 2 542.74699 1083.47943 0.40064 0.00021745 -2.8897 -0.0015684 -2.489 -0.0013509 542.7452252337981 67.407 0.30624 67.407 67.153 67.459 0 17 12 2 0 0 0 0.21367 1 37578 37578 4.756 0.42677 1 373510 + 33435 22602 22337 22750 39285 39285 -0.058973258647938565 LLSGEHLHH 9 Unmodified _LLSGEHLHH_ 0 0 0 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7758178710938 2 521.775065 1041.53558 NaN NaN NaN NaN NaN NaN NaN 78.853 1 78.367 77.867 78.867 -0.48596 0 0 0 0.6557 1 43187 43187 10.824 3.5347 1 + 33436 23017 22338 22751 39286 39286 0.016471078775794012 LLSGPPKKRLV 11 Unmodified _LLSGPPKKRLV_ 0 0 0 REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF REV__ENST00000471702.2_2_3:132339980-132400782:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.2693786621094 3 403.267686 1206.78123 NaN NaN NaN NaN NaN NaN NaN 105.16 1 98.986 98.486 99.486 -6.1757 0 0 0 0.94287 1 70442 70442 0.45452 0.21867 1 + 33437 27497 22339 22752 39287 39287 0.186108080075428 LLSGSTSMT 9 Unmodified _LLSGSTSMT_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7232666015625 2 448.723318 895.432083 NaN NaN NaN NaN NaN NaN NaN 70.118 1 70.118 69.618 70.618 0 0 0 0 0.43505 1 39071 39071 18.135 0 1 33438 5494 22340 22753 39288 39288 -0.019815603451206698 LLSGSYVTL 9 Unmodified _LLSGSYVTL_ 0 0 0 ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 952.5361328125 1 952.534975 951.527698 0.42751 0.00040722 -0.35239 -0.00033567 0.075123 7.1558E-05 952.5345348984038 67.516 0.3194 67.034 66.889 67.208 -0.48219 20 13 2 0 0 0 0.48152 2 36943 36840;36943 8.5933 0 1 1545000 33439 3418 22341 22754 39289;39290 39290 0.04999535837418989 LLSHCPFL 8 Unmodified _LLSHCPFL_ 0 0 0 ENSG00000167612|ENST00000301190|ANKRD33;nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 MSMS AL20221201_MKP_PDAC_01 4 465.2546997070312 2 465.249306 928.484059 NaN NaN NaN NaN NaN NaN NaN 101.53 1 95.352 94.852 95.852 -6.1757 0 0 0 0.88073 1 68125 68125 19.439 5.9311 1 33440 7637 22342 22755 39291 39291 0.016956478592987878 LLSIKKKKKSF 11 Unmodified _LLSIKKKKKSF_ 0 0 0 REV__ENST00000366813.1_1_1:226259189-226259267:+|nuORF REV__ENST00000366813.1_1_1:226259189-226259267:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 660.7752685546875 2 660.442298 1318.87004 NaN NaN NaN NaN NaN NaN NaN 97.686 1 91.51 91.01 92.01 -6.1757 0 0 0 0.94301 1 64735 64735 0.35063 0 1 + 33441 25966 22343 22756 39292 39292 0.22336223247202724 LLSILVPLF 9 Unmodified _LLSILVPLF_ 0 0 0 REV__ENST00000420503.1_1_1:22352034-22356862:+|nuORF REV__ENST00000420503.1_1_1:22352034-22356862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8339538574219 2 507.833529 1013.6525 0.94361 0.0004792 0.44862 0.00022782 1.3922 0.00070702 507.8337390312407 102.4 0.080383 96.221 96.169 96.249 -6.1757 12 6 2 0 0 0 0.013472 1 68713 68713 70.716 3.3717 1 10585000 + 33442 26835 22344 22757 39293 39293 0.14622453044614758 LLSIYFYY 8 Unmodified _LLSIYFYY_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138860740-138860965:-|nuORF;ENST00000511850.1_1_5:138858703-138860965:-|nuORF;ENST00000515507.5_1_5:138860386-138861812:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.283935546875 2 541.283869 1080.55318 0.33885 0.00018342 -0.77858 -0.00042143 -0.43973 -0.00023802 541.2834726079282 83.69 0.36014 83.193 83.007 83.367 -0.49751 37 14 3 0 0 0 0.80624 1 45888 45888 2.8892 0 1 1709600 33443 9274 22345 22758 39294 39294 0.01613010359847067 LLSKEEPI 8 Unmodified _LLSKEEPI_ 0 0 0 REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.770751953125 2 464.771126 927.527698 NaN NaN NaN NaN NaN NaN NaN 67.158 1 67.158 66.658 67.658 0 0 0 0 0.95201 1 37455 37455 10.183 0 1 + 33444 21120 22346 22759 39295 39295 0.061035358374169846 LLSKNNAIEPR 11 Unmodified _LLSKNNAIEPR_ 0 0 0 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8650512695312 2 627.861869 1253.70918 0.19974 0.00012541 2.9456 0.0018495 3.1454 0.0019749 627.8627466801969 80.177 0.68262 80.235 80.05 80.733 0.057587 53 32 2 0 0 0 0.15928 1 44414 44414 35.612 4.3439 1 32610000 33445 9318 22347 22760 39296 39296 0.09247848863174113 LLSLFGKNL 9 Unmodified _LLSLFGKNL_ 0 0 0 ENST00000610253.5_1_11:108058836-108093299:-|nuORF;ENSG00000149308|ENST00000278612|NPAT ENST00000610253.5_1_11:108058836-108093299:-|nuORF ENST00000610253.5_1_11:108058836-108093299:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.7872314453125 2 502.810585 1003.60662 0.92239 0.00046379 -0.55021 -0.00027665 0.37218 0.00018713 502.8102296400994 93.696 0.58458 87.521 87.348 87.932 -6.1757 97 33 4 0 0 0 0.1474 1 62065 62065 28.487 7.6156 1 98789000 33446 15889 22348 22761 39297 39297 0.10495807862366746 LLSNDEICPQL 11 Unmodified _LLSNDEICPQL_ 0 0 0 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8154296875 2 622.813196 1243.61184 2.3281 0.0014499 0.57481 0.000358 2.9029 0.0018079 622.813469801266 95.144 0.34982 95.148 94.972 95.322 0.0041504 35 12 5 0 0 0 0.6249 1 52832 52832 10.074 0.6908 1 6364000 33447 8739 22349 22762 39298 39298 -0.00022301127978607838 LLSNLFTTL 9 Unmodified _LLSNLFTTL_ 0 0 0 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.3006591796875 2 511.30005 1020.58555 0.54334 0.00027781 -0.48027 -0.00024556 0.063073 3.2249E-05 511.29964747527174 60.895 0.74071 60.895 60.67 61.411 0 100 31 5 0 0 0 0.48152 1 34096 34096 8.5933 0 1 144930000 33448 3302 22350 22763 39299 39299 0.07607797762852897 LLSPLLLL 8 Unmodified _LLSPLLLL_ 0 0 0 nc|ENSG00000114631|Q9NZ53-2|PODXL2;ENSG00000114631|ENST00000342480|PODXL2 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 881.6080932617188 1 881.607017 880.599741 0.68647 0.0006052 0.81716 0.00072041 1.5036 0.0013256 881.6075411507763 102.3 0.096947 96.122 96.072 96.169 -6.1757 8 5 2 0 0 0 0.078553 1 68667 68667 112.56 0 1 4306200 + 33449 17343 22351 22764 39300 39300 0.15466494981819778 LLSPVSSMESL 11 Unmodified _LLSPVSSMESL_ 0 0 0 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;ENSG00000155393|ENST00000299192|HEATR3 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.302978515625 2 581.804839 1161.59513 0.96541 0.00056168 -2.3816 -0.0013856 -1.4161 -0.00082392 582.3036247971373 74.336 0.30762 68.16 67.977 68.285 -6.1757 22 15 2 0 0 0 0.37677 1 48590 48590 22.736 4.5899 1 9574100 33450 6387 22352 22765 39301 39301 0.02079197986086001 LLSQMHHY 8 Unmodified _LLSQMHHY_ 0 0 0 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7536010742188 2 514.752744 1027.49094 0.37114 0.00019105 1.339 0.00068927 1.7102 0.00088031 514.7535042963758 90.795 0.51251 90.3 90.074 90.586 -0.49458 90 34 3 0 0 0 0.75262 1 49646 49646 12.532 12.532 1 11461000 33451 4878 22353 22766 39302 39302 -0.021710392601335116 LLSQTPTQSIR 11 Unmodified _LLSQTPTQSIR_ 0 0 0 REV__ENST00000321110.1_1_X:77913870-77914035:-|nuORF REV__ENST00000321110.1_1_X:77913870-77914035:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.35595703125 2 622.353877 1242.6932 3.0762 0.0019145 0.8023 0.00049931 3.8785 0.0024138 622.35422110042 99.802 0.13171 99.765 99.695 99.827 -0.036301 10 4 3 0 0 0 0.5229 1 55446 55446 15.248 2.206 1 3518300 + 33452 25510 22354 22767 39303 39303 0.08156142626262408 LLSQVFPIV 9 Unmodified _LLSQVFPIV_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.3136291503906 2 508.312961 1014.61137 1.1646 0.00059197 0.27366 0.00013911 1.4382 0.00073108 508.31309070709244 100.77 0.10789 94.595 94.528 94.635 -6.1757 13 7 2 0 0 0 0.03568 1 67468 67468 52.268 1.4133 1 35225000 + 33453 23122 22355 22768 39304 39304 0.10464692005143661 LLSRPALL 8 Unmodified _LLSRPALL_ 0 0 0 ENST00000482282.5_1_3:48670520-48671236:-|nuORF ENST00000482282.5_1_3:48670520-48671236:-|nuORF ENST00000482282.5_1_3:48670520-48671236:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7923889160156 2 441.792195 881.569838 NaN NaN NaN NaN NaN NaN NaN 60.797 1 60.754 60.254 61.254 -0.04351 0 0 0 0.83301 1 33168 33168 21.747 0 1 33454 14100 22356 22769 39305 39305 0.12431556036472102 LLSRPRRKTA 10 Unmodified _LLSRPRRKTA_ 0 0 0 REV__ENST00000555100.1_2_14:78142131-78170743:-|nuORF REV__ENST00000555100.1_2_14:78142131-78170743:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.9224853515625 3 399.922801 1196.74657 1.7837 0.00071334 -2.1596 -0.00086368 -0.37592 -0.00015034 399.9217511061824 100.87 0.14931 94.691 94.599 94.748 -6.1757 13 9 2 0 0 0 0.72044 1 67574 67574 0.62683 0 1 25212000 + 33455 18089 22357 22770 39306 39306 0.15606984919463684 LLSRQERAIL 10 Unmodified _LLSRQERAIL_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.24755859375 3 400.247062 1197.71936 0.86685 0.00034696 -0.31556 -0.0001263 0.5513 0.00022065 400.2468933987241 28.808 0.30604 25.66 25.458 25.764 -3.1482 30 14 3 0 0 0 0.5543 1 16046 16046 13.519 0.66272 1 47016000 + 33456 24352 22358 22771 39307 39307 0.12840456588423876 LLSRQERAIL 10 Unmodified _LLSRQERAIL_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 400.247062 1197.71936 -0.53741 -0.0002151 0.27817 0.00011134 -0.25924 -0.00010376 400.2473806923732 25.976 0.14402 25.976 25.862 26.006 0 0.15794 0.00065314 NaN 13.519 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 436250 + 33457 24352 22358 22771 0.12840456588423876 LLSRQERAIL 10 Unmodified _LLSRQERAIL_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 400.247062 1197.71936 0.86685 0.00034696 -0.31556 -0.0001263 0.5513 0.00022065 400.2468933987241 28.808 0.30604 25.66 25.458 25.764 -3.1482 -0.15794 -5.9771E-05 NaN 13.519 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 47016000 + 33458 24352 22358 22771 0.12840456588423876 LLSRRPRFGN 10 Unmodified _LLSRRPRFGN_ 0 0 0 REV__nc|ENSG00000106327|Q9UP52-2|TFR2 REV__nc|ENSG00000106327|Q9UP52-2|TFR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.358642578125 2 608.357088 1214.69962 0.16693 0.00010155 1.4896 0.00090619 1.6565 0.0010077 608.3581937911443 80.121 0.47541 80.179 79.98 80.455 0.057587 65 23 4 0 0 0 0.60623 1 44314 44314 10.824 2.6684 1 369670000 + 33459 18499 22359 22772 39308 39308 0.10086125368320609 LLSSGSLVII 10 Unmodified _LLSSGSLVII_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.3155822753906 2 501.3157 1000.61685 0.3071 0.00015395 -0.84148 -0.00042185 -0.53439 -0.0002679 501.31525645154204 61.834 0.20039 61.834 61.707 61.907 0 13 8 2 0 0 0 0.31022 1 34459 34459 26.884 1.4843 1 847190 33460 5494 22360 22773 39309 39309 0.11656370796947613 LLSSGSLVII 10 Unmodified _LLSSGSLVII_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.3160095214844 2 501.3157 1000.61685 0.32747 0.00016416 1.3914 0.00069752 1.7189 0.00086169 501.3159468555352 62.103 0.19392 61.615 61.51 61.704 -0.48764 14 8 2 0 0 0 0.13184 1 33820 33820 42.095 4.1206 1 1811600 33461 5494 22360 22773 39310 39310 0.11656370796947613 LLSSIIIPG 9 Unmodified _LLSSIIIPG_ 0 0 0 ENST00000373218.4_1_10:72183191-72183227:+|nuORF ENST00000373218.4_1_10:72183191-72183227:+|nuORF ENST00000373218.4_1_10:72183191-72183227:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.5773315429688 1 912.576445 911.569169 0.31138 0.00028415 0.69987 0.00063868 1.0112 0.00092284 912.5768967873801 78.869 0.36584 72.693 72.564 72.93 -6.1757 31 20 2 0 0 0 0.045537 1 51758 51758 46.921 0 1 6788100 33462 12405 22361 22774 39311 39311 0.1098471659677216 LLSSLEAQL 9 Unmodified _LLSSLEAQL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2820739746094 2 487.281857 972.549162 0.44483 0.00021676 0.38317 0.00018671 0.82801 0.00040347 487.2819885057707 68.736 0.28134 68.256 68.118 68.399 -0.48071 26 12 3 0 0 0 0.18465 1 37563 37563 24.674 0 1 1703300 + 33463 176 22362 22775 39312 39312 0.06178920866148019 LLSSNSRSLL 10 Unmodified _LLSSNSRSLL_ 0 0 0 ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6 ENST00000497878.5_1_19:2988043-2994999:+|nuORF ENST00000497878.5_1_19:2988043-2994999:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.820068359375 2 545.316763 1088.61897 1.8693 0.0010193 0.38624 0.00021062 2.2555 0.00123 545.3168503894176 93.671 1.0622 93.694 93.003 94.066 0.022987 107 41 4 0 0 0 0.65502 1 51954 51954 7.9102 0 1 14614000 33464 2262 22363 22776 39313 39313 0.07820799534783873 LLSSSAPRSF 10 Unmodified _LLSSSAPRSF_ 0 0 0 REV__ENST00000494995.5_1_1:155580107-155581593:+|nuORF REV__ENST00000494995.5_1_1:155580107-155581593:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.7909545898438 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 52.691 1 46.956 46.456 47.456 -5.7345 0 0 0 0.59691 1 33263 33263 21.537 3.402 1 + 33465 27945 22364 22777 39314 39314 0.036968414719467546 LLSSSPRLVPF 11 Unmodified _LLSSSPRLVPF_ 0 0 0 ENST00000308448.11_1_10:89577578-89577689:-|nuORF ENST00000308448.11_1_10:89577578-89577689:-|nuORF ENST00000308448.11_1_10:89577578-89577689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3583374023438 2 608.358431 1214.70231 0.82674 0.00050296 -1.2107 -0.00073655 -0.38398 -0.0002336 608.3579072994017 81.043 0.35186 80.551 80.334 80.686 -0.49248 46 18 3 0 0 0 0.58219 1 44318 44318 12.241 0 1 13598000 33466 11652 22365 22778 39315 39315 0.10354535982583002 LLSTHDPPAA 10 Unmodified _LLSTHDPPAA_ 0 0 0 ENST00000526768.5_1_11:1475616-1478267:+|nuORF;ENST00000531932.1_1_11:1475661-1480576:+|nuORF;nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2 ENST00000526768.5_1_11:1475616-1478267:+|nuORF ENST00000526768.5_1_11:1475616-1478267:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2693481445312 2 511.269281 1020.52401 -0.3833 -0.00019597 0.45106 0.00023061 0.067759 3.4643E-05 511.2694718997874 33.949 0.27897 33.949 33.765 34.044 0 36 13 3 0 0 0 0.1028 1 17819 17819 46.021 2.1627 1 13835000 33467 8447 22366 22779 39316 39316 0.014568660635518427 LLSTLGTVPG 10 Unmodified _LLSTLGTVPG_ 0 0 0 ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF ENST00000520635.5_1_8:82644498-82644591:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2854919433594 2 479.2844 956.554247 1.1301 0.00054162 1.2493 0.00059875 2.3793 0.0011404 479.2853171570725 50.822 0.43839 45.173 45.007 45.446 -5.649 35 26 2 0 0 0 0.2178 1 31899 31899 32.305 1.0371 1 31620000 33468 14731 22367 22780 39317 39317 0.07423224728779587 LLSTVIGIP 9 Unmodified _LLSTVIGIP_ 0 0 0 REV__ENSG00000003989|ENST00000494857|SLC7A2 REV__ENSG00000003989|ENST00000494857|SLC7A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.5758666992188 1 912.576445 911.569169 0.116 0.00010586 -0.0071632 -6.537E-06 0.10884 9.9323E-05 912.5766357106554 71.29 0.22345 70.812 70.682 70.905 -0.47736 14 9 2 0 0 0 0.10925 1 39004 39004 32.117 0 1 1252400 + 33469 16941 22368 22781 39318 39318 0.10984716596738053 LLSVAEPCDL 10 Unmodified _LLSVAEPCDL_ 0 0 0 REV__ENST00000368731.6_1_6:111894779-111894851:-|nuORF REV__ENST00000368731.6_1_6:111894779-111894851:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7283325195312 2 530.273175 1058.5318 0.36798 0.00019513 -0.49837 -0.00026427 -0.13039 -6.9142E-05 530.2729642123475 77.376 0.24737 77.376 77.186 77.433 0 14 10 2 0 0 0 0.22149 1 43025 43025 20.454 0 1 993680 + 33470 26019 22369 22782 39319 39319 0.004872572688327637 LLSVEGVEAL 10 Unmodified _LLSVEGVEAL_ 0 0 0 nc|ENSG00000158014|Q9BRI3-1|SLC30A2;ENSG00000158014|ENST00000374276|SLC30A2 nc|ENSG00000158014|Q9BRI3-1|SLC30A2 nc|ENSG00000158014|Q9BRI3-1|SLC30A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.7744140625 2 515.294965 1028.57538 0.4443 0.00022895 3.5984 0.0018542 4.0427 0.0020832 515.7976475318687 100.63 0.084724 94.452 94.374 94.459 -6.1757 9 5 2 0 0 0 0.22149 1 67308 67308 6.2058 0 1 17305000 33471 6558 22370 22783 39320 39320 0.06223190037621862 LLSVGSILQ 9 Unmodified _LLSVGSILQ_ 0 0 0 ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2870483398438 2 465.286943 928.559333 0.31889 0.00014837 0.69588 0.00032378 1.0148 0.00047216 465.287213450926 74.194 0.40564 74.238 74.028 74.433 0.043976 47 17 4 0 0 0 0.024882 1 40845 40845 58.679 3.1761 1 14936000 33472 6834 22371 22784 39321 39321 0.09219528591370363 LLSVPHLSF 9 Unmodified _LLSVPHLSF_ 0 0 0 REV__ENST00000217381.2_1_20:31995804-31996281:-|nuORF REV__ENST00000217381.2_1_20:31995804-31996281:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7948913574219 2 506.794935 1011.57532 0.90546 0.00045888 -1.5239 -0.00077229 -0.61841 -0.00031341 506.7933749952908 99.314 0.14649 93.139 93.028 93.174 -6.1757 16 8 3 0 0 0 0.023164 1 66121 66121 60.39 15.983 1 41156000 + 33473 24748 22372 22785 39322 39322 0.06999234828276713 LLSYGVPFDV 10 Unmodified _LLSYGVPFDV_ 0 0 0 ENST00000450965.5_1_2:239005460-239006993:+|nuORF;ENST00000480357.5_1_2:239002940-239006993:+|nuORF;ENSG00000132330|ENST00000254663|SCLY ENST00000450965.5_1_2:239005460-239006993:+|nuORF ENST00000450965.5_1_2:239005460-239006993:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2952880859375 2 555.297507 1108.58046 NaN NaN NaN NaN NaN NaN NaN 37.258 1 36.987 36.487 37.487 -0.27133 0 0 0 0.61917 1 19573 19573 20.454 5.2051 1 33474 4393 22373 22786 39323 39323 0.03051493900238711 LLSYLFGFY 9 Unmodified _LLSYLFGFY_ 0 0 0 ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF ENSG00000144063|ENST00000272462|MALL ENSG00000144063|ENST00000272462|MALL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.871826171875 2 561.797143 1121.57973 1.2964 0.00072833 1.2867 0.00072289 2.5832 0.0014512 561.7979239412597 94.666 0.52893 88.49 88.219 88.748 -6.1757 51 30 2 0 0 0 0.19994 1 62695 62695 12.532 0 1 22142000 33475 5584 22374 22787 39324 39324 0.023806992511708813 LLSYSFFTLLF 11 Unmodified _LLSYSFFTLLF_ 0 0 0 REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.8711547851562 2 675.87084 1349.72713 0.43533 0.00029423 0.018038 1.2192E-05 0.45337 0.00030642 676.3724014368188 75.655 0.30283 75.703 75.494 75.797 0.047943 30 13 3 0 0 0 0.44389 1 41718 41718 19.257 9.8739 1 2017900 + 33476 21401 22375 22788 39325 39325 0.06625171065343238 LLSYSFFTLLF 11 Unmodified _LLSYSFFTLLF_ 0 0 0 REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 675.87084 1349.72713 0.26251 0.00017742 2.0093 0.0013581 2.2719 0.0015355 676.3729460458962 76.151 0.23853 75.671 75.549 75.787 -0.47945 -0.015909 0.0019388 NaN 19.257 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 374860 + 33477 21401 22375 22788 0.06625171065343238 LLSYSFFTLLF 11 Unmodified _LLSYSFFTLLF_ 0 0 0 REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 675.87084 1349.72713 0.43533 0.00029423 0.018038 1.2192E-05 0.45337 0.00030642 676.3724014368188 75.655 0.30283 75.703 75.494 75.797 0.047943 0.015909 -0.00075292 NaN 19.257 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2017900 + 33478 21401 22375 22788 0.06625171065343238 LLTANEEEME 10 Unmodified _LLTANEEEME_ 0 0 0 REV__nc|ENSG00000230301|Q8NGV6|OR5H6 REV__nc|ENSG00000230301|Q8NGV6|OR5H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7647094726562 2 589.765911 1177.51727 0.55387 0.00032666 -2.9181 -0.001721 -2.3642 -0.0013943 589.7646234570833 72.06 0.38368 71.584 71.389 71.772 -0.47609 40 15 4 0 0 0 0.62068 1 39427 39427 10.074 0.6908 1 5582500 + 33479 29958 22376 22789 39326 39326 -0.06438859669970043 LLTARLPVLGT 11 Unmodified _LLTARLPVLGT_ 0 0 0 ENST00000554088.1_1_14:65182713-65194438:+|nuORF ENST00000554088.1_1_14:65182713-65194438:+|nuORF ENST00000554088.1_1_14:65182713-65194438:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3696899414062 2 577.368798 1152.72304 1.2042 0.00069529 -0.074058 -4.2759E-05 1.1302 0.00065253 577.3686970567378 98.437 0.16193 92.261 92.176 92.338 -6.1757 32 10 4 0 0 0 0.42108 1 65270 65270 20.415 0 1 163970000 33480 15202 22377 22790 39327 39327 0.15279126362247553 LLTCIYDMLLS 11 Unmodified _LLTCIYDMLLS_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8912963867188 3 428.890787 1283.65053 NaN NaN NaN NaN NaN NaN NaN 70.748 1 70.784 70.284 71.284 0.035515 0 0 0 0.94307 1 38945 38945 0.08335 0 1 33481 9690 22378 22791 39328 39328 0.020052881822039126 LLTCLCCK 8 Unmodified _LLTCLCCK_ 0 0 0 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 MSMS AL20221201_MKP_PDAC_01 4 448.722900390625 2 448.723752 895.432952 NaN NaN NaN NaN NaN NaN NaN 78.171 1 71.995 71.495 72.495 -6.1757 0 0 0 0.65904 1 51156 51156 30.225 0 1 33482 5405 22379 22792 39329 39329 -0.018947605014204782 LLTCPVRRCLR 11 Unmodified _LLTCPVRRCLR_ 0 0 0 REV__nc|ENSG00000144369|Q6P995-2|FAM171B REV__nc|ENSG00000144369|Q6P995-2|FAM171B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.8829345703125 2 665.383934 1328.75331 1.2173 0.00081 -0.98876 -0.00065791 0.22858 0.0001521 665.3832460845621 100.61 0.11938 100.57 100.51 100.63 -0.04216 7 4 2 0 0 0 0.30139 1 55893 55893 5.7319 5.7319 1 7827800 + 33483 20702 22380 22793 39330 39330 0.10208838484163607 LLTFFLLQL 9 Unmodified _LLTFFLLQL_ 0 0 0 ENST00000468705.1_1_7:99073929-99077448:+|nuORF ENST00000468705.1_1_7:99073929-99077448:+|nuORF ENST00000468705.1_1_7:99073929-99077448:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8982543945312 3 369.898599 1106.67397 0.24464 9.0491E-05 -4.223 -0.0015621 -3.9783 -0.0014716 369.8973437579651 48.679 0.23816 48.635 48.476 48.714 -0.04369 18 11 2 0 0 0 0.49766 1 26271 26271 7.609 0 1 2572800 33484 13815 22381 22794 39331 39331 0.12489838073338433 LLTGLASLL 9 Unmodified _LLTGLASLL_ 0 0 0 ENST00000261489.6_2_13:45008296-45008374:-|nuORF ENST00000261489.6_2_13:45008296-45008374:-|nuORF ENST00000261489.6_2_13:45008296-45008374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7920532226562 2 450.791861 899.569169 0.38122 0.00017185 0.032169 1.4501E-05 0.41339 0.00018635 450.7917708307457 88.255 0.35423 87.751 87.536 87.89 -0.50423 31 15 3 0 0 0 0.37804 1 48230 48230 13.508 0 1 918100 33485 11243 22382 22795 39332 39332 0.11536716596765473 LLTHMMAASL 10 Unmodified _LLTHMMAASL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8162841796875 2 544.285563 1086.55657 1.4078 0.00076626 2.3037 0.0012539 3.7115 0.0020201 544.2848401751279 50.244 0.20395 50.196 50.087 50.291 -0.048824 11 9 2 0 0 0 0.23227 1 27178 27178 10.824 2.2306 1 652750 33486 7163;16335 22383 22796 39333 39333 0.016756138705659396 LLTKDHIF 8 Unmodified _LLTKDHIF_ 0 0 0 ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE ENSG00000138604|ENST00000261858|GLCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7872009277344 2 493.78711 985.559667 0.44192 0.00021821 -0.14529 -7.1742E-05 0.29663 0.00014647 493.7872352979898 50.996 0.20492 50.942 50.862 51.067 -0.053871 16 9 3 0 0 0 0.76859 1 27630 27630 11.114 0.93107 1 1582000 33487 5066 22384 22797 39334 39334 0.06630948311237717 LLTLQNAT 8 Unmodified _LLTLQNAT_ 0 0 0 ENST00000564983.5_1_16:57596005-57596372:+|nuORF;ENST00000394361.8_1_16:57596005-57608989:+|nuORF;ENSG00000159618|ENST00000349457|ADGRG5 ENST00000564983.5_1_16:57596005-57596372:+|nuORF ENST00000564983.5_1_16:57596005-57596372:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.880126953125 2 437.255643 872.496732 0.23262 0.00010171 -2.163 -0.00094579 -1.9304 -0.00084408 437.2544357684183 78.088 0.27921 78.088 77.965 78.244 0 17 11 2 0 0 0 8.7369 1 43482 43482 0.79363 0 1 535700 33488 6665 22385 22798 39335 39335 0.055383825231729134 LLTNEALAQ 9 Unmodified _LLTNEALAQ_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7731628417969 2 486.771657 971.528761 NaN NaN NaN NaN NaN NaN NaN 45.084 1 45.084 44.584 45.584 0 0 0 0 0.46757 1 24557 24557 16.942 0 1 + 33489 21434 22386 22799 39336 39336 0.041857502063294305 LLTPAAHST 9 Unmodified _LLTPAAHST_ 0 0 0 ENST00000262971.2_1_19:4037866-4037950:+|nuORF ENST00000262971.2_1_19:4037866-4037950:+|nuORF ENST00000262971.2_1_19:4037866-4037950:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 910.5971069335938 1 910.499258 909.491981 0.84876 0.00077279 3.995 0.0036375 4.8438 0.0044103 910.5020381112378 101.15 0.12507 94.972 94.907 95.032 -6.1757 12 7 2 0 0 0 0.11012 1 67833 67833 36.044 0 1 17931000 33490 11278 22387 22800 39337 39337 0.03361498380422745 LLTPSTLF 8 Unmodified _LLTPSTLF_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000494777.1_1_2:220479793-220480912:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2638854980469 2 446.262936 890.51132 1.2974 0.00057898 0.50258 0.00022429 1.8 0.00080326 446.26292388816603 87.713 0.53822 81.537 81.312 81.85 -6.1757 45 29 2 0 0 0 0.44122 1 57798 57798 40.449 0 1 13779000 33491 5622 22388 22801 39338 39338 0.061684546713422606 LLTQFPASI 9 Unmodified _LLTQFPASI_ 0 0 0 REV__nc|ENSG00000137411|Q5ST30-4|VARS2 REV__nc|ENSG00000137411|Q5ST30-4|VARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2879943847656 2 495.286943 988.559333 0.8021 0.00039727 -0.14017 -6.9424E-05 0.66193 0.00032784 495.28701879027483 79.285 0.35077 78.799 78.596 78.947 -0.48595 25 14 3 0 0 0 0.37804 1 43491 43491 13.508 0 1 1248900 + 33492 29653 22389 22802 39339 39339 0.0645952859136969 LLTRNYRDH 9 Unmodified _LLTRNYRDH_ 0 0 0 ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R ENSG00000181408|ENST00000313135|UTS2R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.317626953125 2 594.317628 1186.6207 NaN NaN NaN NaN NaN NaN NaN 69.47 1 69.501 69.001 70.001 0.030914 0 0 0 0.7453 1 38190 38190 7.9102 0 1 33493 8971 22390 22803 39340 39340 0.03485853343386225 LLTRVPRQL 9 Unmodified _LLTRVPRQL_ 0 0 0 REV__ENST00000373699.5_1_6:36839520-36839613:-|nuORF REV__ENST00000373699.5_1_6:36839520-36839613:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1798706054688 3 365.904747 1094.69241 0.17637 6.4535E-05 0.23758 8.693E-05 0.41395 0.00015147 365.90476110960856 26.76 0.233 26.789 26.635 26.868 0.028664 14 9 2 0 0 0 0.21642 1 13834 13834 2.086 0 1 3943900 + 33494 26157 22391 22804 39341 39341 0.14885392767905614 LLTSSFLGVLF 11 Unmodified _LLTSSFLGVLF_ 0 0 0 REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.850341796875 2 598.849907 1195.68526 1.2219 0.00073173 0.33498 0.0002006 1.5569 0.00093233 598.849775597377 92.158 0.36884 92.189 91.993 92.362 0.030197 37 13 3 0 0 0 0.25654 1 51233 51233 29.082 0 1 11057000 + 33495 17588 22392 22805 39342 39342 0.09524615376813017 LLTTVIALT 9 Unmodified _LLTTVIALT_ 0 0 0 ENSG00000169194|ENST00000304506|IL13 ENSG00000169194|ENST00000304506|IL13 ENSG00000169194|ENST00000304506|IL13 MSMS AL20221201_MKP_PDAC_01 4 472.8056335449219 2 472.804968 943.595384 NaN NaN NaN NaN NaN NaN NaN 94.513 1 88.337 87.837 88.837 -6.1757 0 0 0 0.17247 1 62603 62603 34.102 3.8776 1 33496 7846 22393 22806 39343 39343 0.1213298576822126 LLTYFILIM 9 Unmodified _LLTYFILIM_ 0 0 0 REV__ENST00000496055.5_1_1:76255003-76255042:+|nuORF REV__ENST00000496055.5_1_1:76255003-76255042:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 376.1983032226562 3 376.224207 1125.65079 NaN NaN NaN NaN NaN NaN NaN 42.482 1 37.798 37.298 38.298 -4.6846 0 0 0 0.70001 1 25672 25672 9.3831 1.2276 1 + 33497 27863 22394 22807 39344 39344 0.09299075964349868 LLVDDSFLHTV 11 Unmodified _LLVDDSFLHTV_ 0 0 0 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 ENSG00000174939|ENST00000308748|ASPHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8387451171875 2 629.837528 1257.6605 -0.39363 -0.00024792 0.63677 0.00040106 0.24315 0.00015314 629.8381947020187 76.813 0.22103 76.333 76.216 76.437 -0.47945 13 9 2 0 0 0 0.37677 1 42055 42055 22.736 8.8302 1 640470 33498 8470 22395 22808 39345 39345 0.041979355034072796 LLVDNRSII 9 Unmodified _LLVDNRSII_ 0 0 0 ENST00000373344.9_1_X:76940479-76944390:-|nuORF ENST00000373344.9_1_X:76940479-76944390:-|nuORF ENST00000373344.9_1_X:76940479-76944390:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.8168334960938 2 521.816399 1041.61824 0.56114 0.00029281 -0.7867 -0.00041051 -0.22556 -0.0001177 521.8160377246202 67.986 0.33552 67.503 67.323 67.659 -0.48218 25 15 2 0 0 0 0.32871 1 37140 37140 15.847 0 1 1306600 33499 12411 22396 22809 39346 39346 0.09910004885705348 LLVEATSMTH 10 Unmodified _LLVEATSMTH_ 0 0 0 REV__ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant REV__ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8558349609375 3 367.858475 1100.5536 NaN NaN NaN NaN NaN NaN NaN 17.018 1 17.018 16.518 17.518 0 0 0 0 0.97302 1 8350 8350 1.7423 0.78 1 + 33500 16921 22397 22810 39347 39347 0.007340620174090873 LLVELPKA 8 Unmodified _LLVELPKA_ 0 0 0 REV__nc|ENSG00000257923|Q13948|CUX1 REV__nc|ENSG00000257923|Q13948|CUX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7882080078125 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 35.074 1 35.102 34.602 35.602 0.027401 0 0 0 0.97444 1 18520 18520 0.69038 0 1 + 33501 28807 22398 22811 39348 39348 0.11308733942325944 LLVEPTDPMI 10 Unmodified _LLVEPTDPMI_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5401611328125 3 376.538742 1126.5944 1.9575 0.00073708 1.2567 0.00047319 3.2142 0.0012103 376.5392409752516 58.713 0.36029 52.639 52.457 52.817 -6.0745 42 19 3 0 0 0 0.42068 1 37738 37738 12.873 0 1 22310000 + 33502 23320 22399 22812 39349 39349 0.036164033370141624 LLVEVTFNV 9 Unmodified _LLVEVTFNV_ 0 0 0 REV__nc|ENSG00000100003|O76054-5|SEC14L2 REV__nc|ENSG00000100003|O76054-5|SEC14L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2991943359375 2 517.30005 1032.58555 0.57603 0.00029798 -0.6782 -0.00035083 -0.10217 -5.2853E-05 517.2994804243573 82.195 0.20976 81.7 81.557 81.767 -0.4952 13 8 2 0 0 0 0.30202 1 45004 45004 17.113 0 1 441610 + 33503 18000 22400 22813 39350 39350 0.07055797762859584 LLVFNHRF 8 Unmodified _LLVFNHRF_ 0 0 0 REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF REV__ENST00000543026.5_1_12:31240692-31242187:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.3001708984375 2 523.300719 1044.58688 NaN NaN NaN NaN NaN NaN NaN 96.252 1 95.947 95.447 96.447 -0.30472 0 0 0 0.97444 1 52566 52566 2.8892 0 1 + 33504 28517 22401 22814 39351 39351 0.06637476642254114 LLVGAAHL 8 Unmodified _LLVGAAHL_ 0 0 0 REV__ENSG00000174165|ENST00000310442|ZDHHC24 REV__ENSG00000174165|ENST00000310442|ZDHHC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2506408691406 2 397.250163 792.485774 0.46575 0.00018502 0.40083 0.00015923 0.86658 0.00034425 397.2503590302497 40.138 0.70898 35.609 35.307 36.016 -4.5294 99 55 2 0 0 0 0.70131 1 24040 24040 17.087 5.9721 1 63134000 + 33505 22771 22402 22815 39352 39352 0.08123024939561674 LLVGGWWL 8 Unmodified _LLVGGWWL_ 0 0 0 REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 REV__nc|ENSG00000104361|Q9H841-1|NIPAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2738952636719 2 472.273638 942.532724 NaN NaN NaN NaN NaN NaN NaN 70.495 1 70.018 69.518 70.518 -0.47735 0 0 0 0.94749 1 38560 38560 11.114 0 1 + 33506 18353 22403 22816 39353 39353 0.059158844907074126 LLVHGVTL 8 Unmodified _LLVHGVTL_ 0 0 0 nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2;nc|ENSG00000103546|P23975-2|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 nc|ENSG00000103546|P23975-3|SLC6A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2723083496094 2 426.271096 850.527639 1.7634 0.00075167 0.022332 9.5194E-06 1.7857 0.00076119 426.27138987403316 105.46 0.18006 99.287 99.236 99.416 -6.1757 50 25 3 0 0 0 0.80992 1 70653 70653 0.69038 0 1 29274000 33507 2151 22404 22817 39354 39354 0.09639580628106614 LLVISPDSK 9 Unmodified _LLVISPDSK_ 0 0 0 REV__ENSG00000163032|ENST00000295156|VSNL1 REV__ENSG00000163032|ENST00000295156|VSNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.4563598632812 1 971.577174 970.569897 0.7333 0.00071245 -0.56762 -0.00055149 0.16568 0.00016097 971.5764395396535 79.447 0.36887 78.958 78.727 79.096 -0.48932 33 15 3 0 0 0 0.58865 1 43480 43480 2.0598 0 1 3540400 + 33508 21718 22405 22818 39355 39355 0.08343511245800528 LLVKRGWV 8 Unmodified _LLVKRGWV_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.4757080078125 1 970.619648 969.612371 0.14946 0.00014507 3.3984 0.0032985 3.5478 0.0034436 970.6232101561579 99.696 0.18898 93.521 93.399 93.588 -6.1757 23 11 3 0 0 0 0.80044 1 66409 66409 6.3541 0 1 77119000 + 33509 23366 22406 22819 39356 39356 0.12634951164704944 LLVLELQGL 9 Unmodified _LLVLELQGL_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB;ENST00000524437.5_1_11:62402291-62406896:-|nuORF;ENST00000526210.1_1_11:62402291-62407104:-|nuORF nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3186645507812 2 499.318243 996.621933 0.24128 0.00012048 0.37444 0.00018696 0.61572 0.00030744 499.3182590686578 94.695 0.30923 94.274 94.111 94.42 -0.42044 27 15 2 0 0 0 0.53666 1 51783 51783 5.2307 0 1 865960 33510 16072 22407 22820 39357 39357 0.12348674659574499 LLVLLVHARA 10 Unmodified _LLVLLVHARA_ 0 0 0 ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 ENSG00000146197|ENST00000274938|SCUBE3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.866455078125 2 552.866226 1103.7179 NaN NaN NaN NaN NaN NaN NaN 105.1 1 105.05 104.55 105.55 -0.048737 0 0 0 1.0024 1 58331 58331 0.40072 0.40072 1 33511 5760 22408 22821 39358 39358 0.170188672903123 LLVLSALLVL 10 Unmodified _LLVLSALLVL_ 0 0 0 REV__ENST00000490672.1_1_1:155141918-155142388:-|nuORF REV__ENST00000490672.1_1_1:155141918-155142388:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.3203735351562 2 527.367736 1052.72092 1.0716 0.00056514 -1.6115 -0.00084983 -0.53984 -0.00028469 527.3672886307559 99.397 0.086609 93.221 93.174 93.261 -6.1757 7 5 2 0 0 0 0.22149 1 66151 66151 14.838 0 1 19937000 + 33512 27881 22409 22822 39359 39359 0.19666697624438712 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5818481445312 3 384.582617 1150.72602 -0.54125 -0.00020816 -0.98056 -0.00037711 -1.5218 -0.00058526 384.5821511037975 33.275 0.29808 33.275 33.088 33.386 0 38 14 3 0 0 0 0.71123 1 17490 17490 0.69767 0.69767 1 6123600 + 33513 25090 22410 22823 39360 39360 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5818786621094 3 384.582617 1150.72602 0.008864 3.409E-06 -1.1332 -0.00043582 -1.1244 -0.00043241 384.91656231614195 35.904 0.35776 35.904 35.674 36.032 0 28 17 2 0 0 0 0.71123 1 19020 19020 0.69767 0.69767 1 2727400 + 33514 25090 22410 22823 39361 39361 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5821838378906 3 384.582617 1150.72602 -0.10783 -4.1471E-05 -1.1779 -0.00045301 -1.2858 -0.00049448 384.5821175543427 35.479 0.31705 35.503 35.285 35.602 0.024971 38 14 3 0 0 0 0.71123 1 18703 18703 0.69767 0.69767 1 10158000 + 33515 25090 22410 22823 39362 39362 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5822448730469 3 384.582617 1150.72602 0.77958 0.00029981 -1.0856 -0.00041751 -0.30605 -0.0001177 384.5820221058096 38.72 0.58885 34.269 33.976 34.565 -4.4509 78 37 3 0 0 0 0.71276 1 23012 23012 0.62683 0.35781 1 47468000 + 33516 25090 22410 22823 39363 39363 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5825500488281 3 384.582617 1150.72602 0.97448 0.00037477 -1.2209 -0.00046952 -0.24639 -9.4757E-05 384.5819913998216 41.42 0.72163 36.812 36.624 37.345 -4.6079 125 46 3 0 0 0 0.67033 3 24791 24791;24921;25057 3.3196 3.3196 1 59951000 + 33517 25090 22410 22823 39364;39365;39366 39364 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.582617 1150.72602 0.008864 3.409E-06 -1.1332 -0.00043582 -1.1244 -0.00043241 384.91656231614195 35.904 0.35776 35.904 35.674 36.032 0 0.028511 0.00027134 NaN 0.69767 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2727400 + 33518 25090 22410 22823 0.1566867821543383 LLVMKLLHGK 10 Unmodified _LLVMKLLHGK_ 0 0 0 REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF REV__ENST00000265339.6_1_5:133710138-133716421:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.582617 1150.72602 -0.20613 -7.9274E-05 -1.3758 -0.00052911 -1.5819 -0.00060838 384.58193376529005 35.596 0.19523 35.596 35.479 35.674 0 0.046486 -0.00015749 NaN 0.69767 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1855100 + 33519 25090 22410 22823 0.1566867821543383 LLVNPDIR 8 Unmodified _LLVNPDIR_ 0 0 0 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2851257324219 2 470.284734 938.554916 -0.15631 -7.3509E-05 -0.11629 -5.4688E-05 -0.27259 -0.0001282 470.2848993913426 44.712 0.1994 44.396 44.308 44.507 -0.31585 15 10 2 0 0 0 0.40035 1 23875 23875 44.407 0 1 22571000 + 33520 16996 22411 22824 39367 39367 0.08318064168474848 LLVNPDIR 8 Unmodified _LLVNPDIR_ 0 0 0 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 REV__nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.284734 938.554916 -0.15631 -7.3509E-05 -0.11629 -5.4688E-05 -0.27259 -0.0001282 470.2848993913426 44.712 0.1994 44.396 44.308 44.507 -0.31585 0 0 NaN 44.407 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 22571000 + 33521 16996 22411 22824 0.08318064168474848 LLVPAAGNK 9 Unmodified _LLVPAAGNK_ 0 0 0 REV__ENSG00000186073|ENST00000566621|CDIN1 REV__ENSG00000186073|ENST00000566621|CDIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 882.5444946289062 1 882.540729 881.533452 3.4165 0.0030152 1.2586 0.0011108 4.6751 0.004126 882.5418122369955 97.634 0.21329 97.615 97.519 97.733 -0.018188 12 7 2 0 0 0 0.023164 1 54261 54261 60.39 12.044 1 4507300 + 33522 23547 22412 22825 39368 39368 0.08794679139748496 LLVPAAGNK 9 Unmodified _LLVPAAGNK_ 0 0 0 REV__ENSG00000186073|ENST00000566621|CDIN1 REV__ENSG00000186073|ENST00000566621|CDIN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 882.540729 881.533452 3.4165 0.0030152 1.2586 0.0011108 4.6751 0.004126 882.5418122369955 97.634 0.21329 97.615 97.519 97.733 -0.018188 0 0 NaN 60.39 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4507300 + 33523 23547 22412 22825 0.08794679139748496 LLVPLAPLA 9 Unmodified _LLVPLAPLA_ 0 0 0 ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.8048400878906 2 453.804771 905.59499 0.36607 0.00016613 -0.13572 -6.1592E-05 0.23035 0.00010453 453.8045980673347 88.336 0.32953 87.832 87.649 87.978 -0.50423 30 14 3 0 0 0 0.3554 1 48377 48377 14.582 0 1 1707200 33524 11046 22413 22826 39369 39369 0.13841610839017449 LLVPLAPLAL 10 Unmodified _LLVPLAPLAL_ 0 0 0 ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF ENST00000225964.9_1_17:48265286-48266811:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2735595703125 2 510.346803 1018.67905 0.24571 0.0001254 -0.26093 -0.00013316 -0.015222 -7.7687E-06 510.34649905298824 88.348 0.18665 87.844 87.725 87.912 -0.50423 13 8 2 0 0 0 0.22993 1 48330 48330 12.532 0 1 735630 33525 11046 22414 22827 39370 39370 0.17046141935907144 LLVPLRLLPFF 11 Unmodified _LLVPLRLLPFF_ 0 0 0 REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.4285888671875 2 664.428659 1326.84277 NaN NaN NaN NaN NaN NaN NaN 97.531 1 97.513 97.013 98.013 -0.018188 0 0 0 0.9435 1 54180 54180 0 0 1 + 33526 28466 22415 22828 39371 39371 0.19241739706808403 LLVPPLAAL 9 Unmodified _LLVPPLAAL_ 0 0 0 REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5 REV__nc|ENSG00000117500|Q9Y3A6-2|TMED5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.8041381835938 2 453.804771 905.59499 0.36607 0.00016613 -0.13572 -6.1592E-05 0.23035 0.00010453 453.8045980673347 88.336 0.32953 87.832 87.649 87.978 -0.50423 30 14 3 0 0 0 0.085487 1 48274 48274 36.466 8.2929 1 1707200 + 33527 19110 22416 22829 39372 39372 0.13841610839028817 LLVQEEEM 8 Unmodified _LLVQEEEM_ 0 0 0 REV__ENST00000446818.6_2_3:17469969-17549971:-|nuORF REV__ENST00000446818.6_2_3:17469969-17549971:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.4814453125 1 990.481224 989.473948 1.5057 0.0014914 -0.37747 -0.00037388 1.1283 0.0011175 990.4816844818007 103.28 0.046448 97.101 97.076 97.122 -6.1757 26 12 3 0 0 0 0.76859 1 69250 69250 11.114 0 1 6009300 + 33528 27148 22417 22830 39373 39373 -0.021210046565897755 LLVQEVPVG 9 Unmodified _LLVQEVPVG_ 0 0 0 REV__ENSG00000146410|ENST00000420702|MTFR2 REV__ENSG00000146410|ENST00000420702|MTFR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2870178222656 2 477.286943 952.559333 1.049 0.00050066 -1.8017 -0.00085994 -0.75277 -0.00035929 477.2863984051213 87.383 0.63455 81.207 80.788 81.422 -6.1757 52 34 2 0 0 0 0.022193 1 57654 57654 61.357 0 1 19991000 + 33529 20832 22418 22831 39374 39374 0.08115528591383736 LLVQIDDK 8 Unmodified _LLVQIDDK_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2768249511719 2 472.276575 942.538597 0.21461 0.00010136 -0.1207 -5.7002E-05 0.093917 4.4355E-05 472.2764890651321 65.297 0.22962 65.297 65.117 65.347 0 12 8 2 0 0 0 0.80624 1 36425 36425 2.8892 0 1 511650 33530 1869 22419 22832 39375 39375 0.06502938211701803 LLVRDQADI 9 Unmodified _LLVRDQADI_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MSMS AL20221201_MKP_PDAC_01 4 521.7987060546875 2 521.798206 1041.58186 NaN NaN NaN NaN NaN NaN NaN 42.111 1 37.427 36.927 37.927 -4.6846 0 0 0 0.12343 1 25395 25395 39.95 2.8751 1 + 33531 20378 22420 22833 39376 39376 0.0627312798899311 LLVRKYKAL 9 Unmodified _LLVRKYKAL_ 0 0 0 REV__ENSG00000242173|ENST00000219409|ARHGDIG REV__ENSG00000242173|ENST00000219409|ARHGDIG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3681030273438 2 552.368601 1102.72265 NaN NaN NaN NaN NaN NaN NaN 100.88 1 100.84 100.34 101.34 -0.04216 0 0 0 0.70111 1 56042 56042 9.3474 0 1 + 33532 24458 22421 22834 39377 39377 0.1753975143308253 LLVRPLLLL 9 Unmodified _LLVRPLLLL_ 0 0 0 REV__nc|ENSG00000112514|O60888-3|CUTA REV__nc|ENSG00000112514|O60888-3|CUTA MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3765258789062 2 525.375895 1048.73724 1.4627 0.00076849 0.17447 9.166E-05 1.6372 0.00086015 525.3758619163319 101.03 0.090996 94.856 94.798 94.889 -6.1757 9 4 3 0 0 0 0.06187 1 67725 67725 42.095 2.1372 1 21427000 + 33533 18823 22422 22835 39378 39378 0.21481823581234494 LLVSDKRL 8 Unmodified _LLVSDKRL_ 0 0 0 REV__ENST00000307720.3_1_4:159630856-159630895:-|nuORF REV__ENST00000307720.3_1_4:159630856-159630895:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.30078125 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 56.141 1 50.164 49.664 50.664 -5.9769 0 0 0 0.41481 1 35798 35798 52.268 8.4101 1 + 33534 25390 22423 22836 39379 39379 0.112626372025602 LLVTLQKWIHL 11 Unmodified _LLVTLQKWIHL_ 0 0 0 REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2869262695312 3 455.286857 1362.83874 NaN NaN NaN NaN NaN NaN NaN 70.46 1 69.983 69.483 70.483 -0.47735 0 0 0 0.93648 1 38539 38539 5.0475 1.9753 1 + 33535 27186 22424 22837 39380 39380 0.1718365021313275 LLVTVGRVS 9 Unmodified _LLVTVGRVS_ 0 0 0 ENSG00000173638|ENST00000311124|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1;nc|ENSG00000173638|P41440-3|SLC19A1 ENSG00000173638|ENST00000311124|SLC19A1 ENSG00000173638|ENST00000311124|SLC19A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.3009643554688 2 472.300384 942.586216 0.93394 0.0004411 0.40216 0.00018994 1.3361 0.00063104 472.3005297754661 49.762 0.27821 49.713 49.549 49.827 -0.048824 27 13 3 0 0 0 0.03568 1 26895 26895 52.268 0.63854 1 2859700 33536 8350 22425 22838 39381 39381 0.11262637202571568 LLVVSLKKKR 10 Unmodified _LLVVSLKKKR_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MSMS AL20221201_MKP_PDAC_01 4 395.2798156738281 3 395.279814 1182.81761 NaN NaN NaN NaN NaN NaN NaN 104.84 1 98.662 98.162 99.162 -6.1757 0 0 0 0.99897 1 70179 70179 0.77653 0.54069 1 33537 6912 22426 22839 39382 39382 0.23351684904264403 LLWAVLMIL 9 Unmodified _LLWAVLMIL_ 0 0 0 REV__ENST00000591899.7_1_19:1598005-1598050:-|nuORF REV__ENST00000591899.7_1_19:1598005-1598050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3353271484375 2 536.335381 1070.65621 0.44537 0.00023887 -0.015934 -8.5458E-06 0.42943 0.00023032 536.3352372715229 40.533 0.212 40.538 40.402 40.614 0.0050545 14 9 2 0 0 0 0.36964 1 21600 21600 5.2307 0 1 1824300 + 33538 29168 22427 22840 39383 39383 0.12370799546806666 LLWDYVYQL 9 Unmodified _LLWDYVYQL_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;nc|ENSG00000010030|Q9Y603-7|ETV7;ENSG00000010030|ENST00000340181|ETV7;DDX39B-ETV7|4|fusion;nc|ENSG00000010030|Q9Y603-5|ETV7;DDX39B-ETV7|2|fusion;nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;ENSG00000139083|ENST00000396373|ETV6 DDX39B-ETV7|3|fusion;ENSG00000139083|ENST00000396373|ETV6 DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8193969726562 2 606.818607 1211.62266 1.0035 0.00060896 0.51732 0.00031392 1.5209 0.00092288 606.8187506142893 101.07 0.1414 94.899 94.815 94.956 -6.1757 24 7 4 0 0 0 0.023164 1 67729 67729 60.39 28.084 1 298860000 33539 230;5122 22428 22841 39384 39384 0.02531469308587475 LLWEDVVR 8 Unmodified _LLWEDVVR_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2;REV__nc|ENSG00000179915|Q9ULB1-2|NRXN1 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.1924438476562 2 515.290017 1028.56548 0.54207 0.00027932 -0.80489 -0.00041475 -0.26282 -0.00013543 515.2894628524347 66.492 0.21198 60.316 60.137 60.349 -6.1757 17 11 2 0 0 0 8.7369 1 43236 43236 9.3474 1.4373 1 4565800 + 33540 18689;23127 22429 22842 39385 39385 0.05234046822897653 LLWEELLKGT 10 Unmodified _LLWEELLKGT_ 0 0 0 REV__ENST00000326685.11_1_5:148638855-148639278:+|nuORF REV__ENST00000326685.11_1_5:148638855-148639278:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2321166992188 3 401.232418 1200.67542 0.61291 0.00024592 -2.3121 -0.00092769 -1.6992 -0.00068177 401.2313894417103 28.678 0.14207 28.616 28.528 28.67 -0.062159 12 5 3 0 0 0 0.45406 1 14806 14806 18.721 3.7641 1 4600200 + 33541 25565 22430 22843 39386 39386 0.08311427371404534 LLWEQSFCW 9 Unmodified _LLWEQSFCW_ 0 0 0 ENSG00000019995|ENST00000359653|ZRANB1 ENSG00000019995|ENST00000359653|ZRANB1 ENSG00000019995|ENST00000359653|ZRANB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8243408203125 2 606.281334 1210.54812 0.14929 9.0509E-05 -1.9546 -0.001185 -1.8053 -0.0010945 606.2796510794321 76.861 0.33408 76.911 76.722 77.057 0.05011 32 13 3 0 0 0 0.19613 1 42478 42478 7.9102 0.62092 1 4369400 33542 519 22431 22844 39387 39387 -0.04873616774398215 LLWFDMHFFQ 10 Unmodified _LLWFDMHFFQ_ 0 0 0 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 REV__nc|ENSG00000145860|Q96MT1-3|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.889404296875 3 461.889998 1382.64816 -0.042152 -1.9469E-05 -0.40033 -0.00018491 -0.44248 -0.00020438 461.88968561608203 26.703 0.21144 26.703 26.571 26.782 0 19 9 3 0 0 0 0.71276 1 13757 13757 0.62683 0 1 1619300 + 33543 29682 22432 22845 39388 39388 -0.027853794406382804 LLWFLWMSQ 9 Unmodified _LLWFLWMSQ_ 0 0 0 ENST00000254928.9_1_17:27184972-27185463:+|nuORF ENST00000254928.9_1_17:27184972-27185463:+|nuORF ENST00000254928.9_1_17:27184972-27185463:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5479736328125 3 408.547572 1222.62089 NaN NaN NaN NaN NaN NaN NaN 17.462 1 17.475 16.975 17.975 0.013865 0 0 0 0.85852 1 8683 8683 0.20686 0.047535 1 33544 11169 22433 22846 39389 39389 0.018481370189874724 LLWFVRLL 8 Unmodified _LLWFVRLL_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.7947998046875 2 530.339313 1058.66407 0.82302 0.00043648 4.2249 0.0022406 5.0479 0.0026771 530.342614499726 99.95 0.078552 93.775 93.74 93.819 -6.1757 8 5 2 0 0 0 8.7369 1 66702 66702 2.5775 0 1 12277000 + 33545 23799 22434 22847 39390 39390 0.13708694858610215 LLWGNAVYL 9 Unmodified _LLWGNAVYL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7941284179688 2 524.794935 1047.57532 1.2733 0.00066821 -4.3984 -0.0023083 -3.1251 -0.0016401 525.2922177596657 100.25 0.14406 94.073 93.978 94.122 -6.1757 13 8 2 0 0 0 0.078417 1 66991 66991 38.151 3.9638 1 22368000 33546 760 22435 22848 39391 39391 0.05343234828274035 LLWGNAVYL 9 Unmodified _LLWGNAVYL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.794935 1047.57532 1.9076 0.0010011 0.2849 0.00014952 2.1925 0.0011506 525.2964118745717 94.211 0.26974 94.225 94.083 94.352 0.014244 0.076091 0.00056711 NaN 38.151 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1600900 33547 760 22435 22848 0.05343234828274035 LLWKERLAKKK 11 Unmodified _LLWKERLAKKK_ 0 0 0 REV__ENSG00000099260|ENST00000263174|PALMD REV__ENSG00000099260|ENST00000263174|PALMD MULTI-MSMS AL20221201_MKP_PDAC_01 4 706.958984375 2 706.958646 1411.90274 1.2632 0.00089304 -1.7541 -0.0012401 -0.49092 -0.00034706 706.9571935806102 104.25 0.10817 98.079 98.014 98.122 -6.1757 9 5 2 0 0 0 0.74096 1 69837 69837 1.1933 0 1 14893000 + 33548 17970 22436 22849 39392 39392 0.2132643037004982 LLWPDRELP 9 Unmodified _LLWPDRELP_ 0 0 0 REV__ENST00000361483.4_1_12:111798605-111799217:-|nuORF REV__ENST00000361483.4_1_12:111798605-111799217:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.2141418457031 3 380.213358 1137.61824 NaN NaN NaN NaN NaN NaN NaN 109.53 1 103.36 102.86 103.86 -6.1757 0 0 0 0.84892 1 73146 73146 0.86438 0.3012 1 + 33549 25925 22437 22850 39393 39393 0.05494004885713366 LLWQESRI 8 Unmodified _LLWQESRI_ 0 0 0 REV__ENST00000527696.5_1_11:209075-209246:+|nuORF REV__ENST00000527696.5_1_11:209075-209246:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2963256835938 2 522.795466 1043.57638 0.24146 0.00012623 -0.24306 -0.00012707 -0.0015983 -8.3561E-07 522.7956752797638 55.238 0.60475 54.76 54.548 55.152 -0.47798 154 28 7 0 0 0 0.72953 1 30084 30084 14.582 2.0501 1 114300000 + 33550 28397 22438 22851 39394 39394 0.056334491971938405 LLWQRFWARRW 11 Unmodified _LLWQRFWARRW_ 0 0 0 ENST00000393640.8_1_16:70432790-70433162:-|nuORF ENST00000393640.8_1_16:70432790-70433162:-|nuORF ENST00000393640.8_1_16:70432790-70433162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 809.4483642578125 2 809.449311 1616.88407 NaN NaN NaN NaN NaN NaN NaN 54.879 1 54.412 53.912 54.912 -0.46664 0 0 0 0.9435 1 29754 29754 0 0 1 33551 12711 22439 22852 39395 39395 0.10030313518859657 LLWQRFWARRW 11 Unmodified _LLWQRFWARRW_ 0 0 0 ENST00000393640.8_1_16:70432790-70433162:-|nuORF ENST00000393640.8_1_16:70432790-70433162:-|nuORF ENST00000393640.8_1_16:70432790-70433162:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 809.4445190429688 2 809.449311 1616.88407 NaN NaN NaN NaN NaN NaN NaN 78.478 1 72.302 71.802 72.802 -6.1757 0 0 0 0.94144 1 51367 51367 1.4819 1.1749 1 33552 12711 22439 22852 39396 39396 0.10030313518859657 LLWTARPRV 9 Unmodified _LLWTARPRV_ 0 0 0 REV__ENSG00000124098|ENST00000371384|FAM210B REV__ENSG00000124098|ENST00000371384|FAM210B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.2292785644531 3 371.229342 1110.6662 NaN NaN NaN NaN NaN NaN NaN 68.901 1 68.42 67.92 68.92 -0.48071 0 0 0 0.85359 1 37663 37663 1.0715 0 1 + 33553 19412 22440 22853 39397 39397 0.1152912359639231 LLWVAVLLLC 10 Unmodified _LLWVAVLLLC_ 0 0 0 ENST00000527257.1_1_11:124972023-124972236:-|nuORF;ENSG00000150433|ENST00000682305|TMEM218 ENST00000527257.1_1_11:124972023-124972236:-|nuORF ENST00000527257.1_1_11:124972023-124972236:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8521118164062 2 571.853938 1141.69332 NaN NaN NaN NaN NaN NaN NaN 99.544 1 99.508 99.008 100.01 -0.036301 0 0 0 0.6668 1 55285 55285 18.135 0 1 33554 6055 22441 22854 39398 39398 0.12814471092588064 LLWVSVLFL 9 Unmodified _LLWVSVLFL_ 0 0 0 REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8954162597656 3 363.895078 1088.6634 0.026152 9.5168E-06 0.6849 0.00024923 0.71105 0.00025875 363.89532993278726 19.25 0.25942 19.258 19.08 19.34 0.0078487 42 15 3 0 0 0 0.60285 1 9733 9733 1.1933 0 1 2318600 + 33555 25223 22442 22855 39399 39399 0.12261855418887535 LLWVSVLFL 9 Unmodified _LLWVSVLFL_ 0 0 0 REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.895078 1088.6634 -0.47885 -0.00017425 0.62575 0.00022771 0.1469 5.3456E-05 363.8953801085735 19.248 0.21831 19.248 19.185 19.403 0 0.02058 -0.00012835 NaN 1.1933 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 688050 + 33556 25223 22442 22855 0.12261855418887535 LLWVSVLFL 9 Unmodified _LLWVSVLFL_ 0 0 0 REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF REV__ENST00000286485.12_1_8:18662369-18666324:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.895078 1088.6634 0.026152 9.5168E-06 0.6849 0.00024923 0.71105 0.00025875 363.89532993278726 19.25 0.25942 19.258 19.08 19.34 0.0078487 0.030741 -6.3778E-05 NaN 1.1933 42 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2318600 + 33557 25223 22442 22855 0.12261855418887535 LLWVTLLLLIT 11 Unmodified _LLWVTLLLLIT_ 0 0 0 REV__nc|ENSG00000100926|O15321-2|TM9SF1 REV__nc|ENSG00000100926|O15321-2|TM9SF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.4307861328125 2 649.428325 1296.8421 1.5171 0.00098527 2.9834 0.0019375 4.5005 0.0029228 649.4297190558517 104.28 0.080009 98.102 98.052 98.132 -6.1757 9 4 3 0 0 0 0.71341 1 69854 69854 2.9952 1.5133 1 5226100 + 33558 18117 22443 22856 39400 39400 0.2055490026714324 LLYDAEIHL 9 Unmodified _LLYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.79541015625 2 543.795132 1085.57571 0.31714 0.00017246 -0.11746 -6.3873E-05 0.19968 0.00010858 543.7951234568845 68.986 0.31374 68.986 68.838 69.152 0 35 13 3 0 0 0 0.087258 2 38412 38412;38513 36.044 16.717 1 5166600 33559 7155 22444 22857 39401;39402 39401 0.03634609757477847 LLYDAEIHL 9 Unmodified _LLYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7972412109375 2 543.795132 1085.57571 -0.26078 -0.00014181 2.2662 0.0012324 2.0055 0.0010906 543.7965644268176 69.455 0.48006 68.976 68.81 69.29 -0.47903 36 20 2 0 0 0 0.052168 1 38029 38029 44.407 8.3628 1 7059500 33560 7155 22444 22857 39403 39403 0.03634609757477847 LLYDAEIHL 9 Unmodified _LLYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7929077148438 2 543.795132 1085.57571 0.68571 0.00037289 -0.12775 -6.947E-05 0.55796 0.00030342 543.7950177358762 77.995 0.648 71.819 71.325 71.973 -6.1757 50 36 2 0 0 0 0.023164 3 50836 50836;50965;51120 60.39 30.165 1 12115000 33561 7155 22444 22857 39404;39405;39406 39404 0.03634609757477847 LLYDAEIHL 9 Unmodified _LLYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7955322265625 2 543.795132 1085.57571 0.15979 8.6895E-05 -0.59173 -0.00032178 -0.43194 -0.00023489 543.7948830069452 78.503 0.55502 72.328 72.073 72.628 -6.1757 56 34 2 0 0 0 0.052168 1 51267 51267 44.407 6.2314 1 24864000 33562 7155 22444 22857 39407 39407 0.03634609757477847 LLYDTVQTL 9 Unmodified _LLYDTVQTL_ 0 0 0 REV__ENSG00000027644|ENST00000368195|INSRR REV__ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.295166015625 2 533.294965 1064.57538 0.89242 0.00047592 -0.28383 -0.00015136 0.60859 0.00032456 533.295137038937 90.038 0.59346 83.863 83.562 84.156 -6.1757 65 33 3 0 0 0 0.12841 1 59510 59510 30.225 1.738 1 20484000 + 33563 17133 22445 22858 39408 39408 0.04567190037619184 LLYEHQNNL 9 Unmodified _LLYEHQNNL_ 0 0 0 ENST00000565062.5_1_16:90097706-90103159:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8 ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2922973632812 2 572.293288 1142.57202 0.48043 0.00027495 -0.077931 -4.4599E-05 0.4025 0.00023035 572.292903183381 36.038 0.17288 36.038 35.975 36.148 0 16 8 3 0 0 0 0.014417 1 19087 19087 69.105 29.148 1 3976700 33564 15396 22446 22859 39409 39409 0.006439399836153825 LLYEHQNNL 9 Unmodified _LLYEHQNNL_ 0 0 0 ENST00000565062.5_1_16:90097706-90103159:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8 ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 572.293288 1142.57202 -0.34748 -0.00019886 1.1534 0.00066011 0.80596 0.00046125 572.2942157091113 36.265 0.15895 36.015 35.927 36.086 -0.2497 -0.011747 0.00089823 NaN 69.105 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1001200 33565 15396 22446 22859 0.006439399836153825 LLYELWERH 9 Unmodified _LLYELWERH_ 0 0 0 REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF REV__ENST00000475133.5_1_1:15892828-15894669:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 420.2231750488281 3 420.224146 1257.65061 NaN NaN NaN NaN NaN NaN NaN 18.35 1 15.728 15.228 16.228 -2.6215 0 0 0 0.83049 1 9658 9658 2.2828 0 1 + 33566 19028 22447 22860 39410 39410 0.032087922887058085 LLYEMFLML 9 Unmodified _LLYEMFLML_ 0 0 0 REV__ENST00000216281.12_1_14:102547104-102547248:-|nuORF REV__ENST00000216281.12_1_14:102547104-102547248:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8089599609375 2 586.808339 1171.60213 0.71406 0.00041901 -1.2071 -0.00070832 -0.49302 -0.00028931 586.8083556915432 82.81 2.0493 76.634 75.932 77.981 -6.1757 242 111 4 0 0 0 0.087258 5 54252 54126;54252;54384;54529;54799 36.044 36.044 1 61015000 + 33567 24738 22448 22861 39411;39412;39413;39414;39415 39412 0.023188393329519386 LLYETAGLAL 10 Unmodified _LLYETAGLAL_ 0 0 0 REV__ENSG00000124657|ENST00000244623|OR2B6 REV__ENSG00000124657|ENST00000244623|OR2B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3040161132812 2 532.305332 1062.59611 1.1602 0.00061759 0.40902 0.00021773 1.5692 0.00083531 532.3052909886387 58.305 0.45399 52.231 52.126 52.58 -6.0745 54 24 3 0 0 0 0.46514 1 37514 37514 18.146 0 1 10676000 + 33568 19460 22449 22862 39416 39416 0.06731780417271693 LLYGCTLAL 9 Unmodified _LLYGCTLAL_ 0 0 0 ENST00000452737.5_1_22:24059350-24059464:-|nuORF ENST00000452737.5_1_22:24059350-24059464:-|nuORF ENST00000452737.5_1_22:24059350-24059464:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7669982910156 2 483.770071 965.52559 -0.093263 -4.5118E-05 -4.3198 -0.0020898 -4.4131 -0.0021349 483.76652537930664 56.757 0.27743 56.272 56.153 56.43 -0.48554 21 13 3 0 0 0 0.25297 1 30918 30918 19.439 0 1 1261200 33569 13547 22450 22863 39417 39417 0.041447838279623284 LLYGKNNIL 9 Unmodified _LLYGKNNIL_ 0 0 0 SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.313232421875 2 524.313492 1046.61243 0.19306 0.00010123 -0.47948 -0.0002514 -0.28642 -0.00015017 524.3133473536985 70.652 0.35274 70.175 70.015 70.368 -0.47736 62 29 3 0 0 0 0.12841 1 38595 38595 30.225 1.738 1 9747000 33570 30160 22451 22864 39418 39418 0.09098906374038052 LLYGKNNIL 9 Unmodified _LLYGKNNIL_ 0 0 0 SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.313492 1046.61243 0.29359 0.00015393 0.24266 0.00012723 0.53625 0.00028116 524.8149193883962 70.294 0.12415 70.294 70.253 70.377 0 0.10214 0.00045757 NaN 30.225 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 323200 33571 30160 22451 22864 0.09098906374038052 LLYGKNNIL 9 Unmodified _LLYGKNNIL_ 0 0 0 SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.313492 1046.61243 0.19306 0.00010123 -0.47948 -0.0002514 -0.28642 -0.00015017 524.3133473536985 70.652 0.35274 70.175 70.015 70.368 -0.47736 -0.016863 -0.00029969 NaN 30.225 62 29 3 NaN NaN NaN NaN 0 NaN NaN 0 9747000 33572 30160 22451 22864 0.09098906374038052 LLYGKNNIL 9 Unmodified _LLYGKNNIL_ 0 0 0 SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant SGSM1|p.V263I|1|0.17|ENSG00000167037|chr22:24855666-24855666|G/A|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.313492 1046.61243 0.35647 0.0001869 0.01506 7.8961E-06 0.37153 0.0001948 524.3134070969239 70.071 0.231 70.107 70.04 70.271 0.035515 -0.085274 0.0002189 NaN 30.225 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2351600 33573 30160 22451 22864 0.09098906374038052 LLYGKPDGAF 10 Unmodified _LLYGKPDGAF_ 0 0 0 nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.791748046875 2 540.78985 1079.56515 1.1194 0.00060539 0.073418 3.9704E-05 1.1929 0.00064509 540.7909021768653 71.161 0.31888 71.2 71.046 71.365 0.039024 30 13 3 0 0 0 0.48505 1 39192 39192 17.113 1.2657 1 1510400 33574 3305 22452 22865 39419 39419 0.028546271030336356 LLYIFKQPFM 10 Unmodified _LLYIFKQPFM_ 0 0 0 ENSG00000049249|ENST00000377507|TNFRSF9 ENSG00000049249|ENST00000377507|TNFRSF9 ENSG00000049249|ENST00000377507|TNFRSF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.3616943359375 2 650.362127 1298.7097 NaN NaN NaN NaN NaN NaN NaN 100.63 1 100.5 99.997 101 -0.13293 0 0 0 1.0019 1 54926 54926 0.45834 0 1 33575 708 22453 22866 39420 39420 0.07229552258672811 LLYLHDVL 8 Unmodified _LLYLHDVL_ 0 0 0 REV__ENSG00000030066|ENST00000378460|NUP160 REV__ENSG00000030066|ENST00000378460|NUP160 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2892456054688 2 493.289485 984.564418 NaN NaN NaN NaN NaN NaN NaN 91.052 1 90.558 90.058 91.058 -0.49457 0 0 0 0.9249 1 49775 49775 15.768 0 1 + 33576 17142 22454 22867 39421 39421 0.07151832453996576 LLYLLVPAL 9 Unmodified _LLYLLVPAL_ 0 0 0 nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R;ENST00000536092.1_12:7243942-7244984:-|nuORF;ENST00000545466.1_12:7242646-7244984:-|nuORF nc|ENSG00000159403|P00736|C1R nc|ENSG00000159403|P00736|C1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8349914550781 2 507.833529 1013.6525 0.77895 0.00039557 1.0263 0.00052119 1.8053 0.00091677 507.83441599573507 102.16 0.13397 95.982 95.918 96.052 -6.1757 10 5 2 0 0 0 0.1492 1 68577 68577 28.173 7.302 1 5169300 33577 6653 22455 22868 39422 39422 0.1462245304460339 LLYMMESCL 9 Unmodified _LLYMMESCL_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1712646484375 3 368.170897 1101.49086 -0.30795 -0.00011338 1.1942 0.00043968 0.88629 0.00032631 368.17133587582344 51.988 0.30514 51.988 51.823 52.129 0 60 13 6 0 0 0 0.49272 1 28815 28815 4.897 1.9018 1 34314000 33578 5601 22456 22869 39423 39423 -0.05582543366654136 LLYNEAVLL 9 Unmodified _LLYNEAVLL_ 0 0 0 REV__nc|ENSG00000163141|Q7Z465-3|BNIPL REV__nc|ENSG00000163141|Q7Z465-3|BNIPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3077392578125 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 85.295 1 84.793 84.293 85.293 -0.5015 0 0 0 0.18753 1 46670 46670 32.305 3.8186 1 + 33579 21730 22457 22870 39424 39424 0.07976084279903262 LLYQEGAKMAV 11 Oxidation (M) _LLYQEGAKM(Oxidation (M))AV_ LLYQEGAKM(1)AV LLYQEGAKM(50)AV 0 0 1 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8253173828125 2 619.826106 1237.63766 -0.41411 -0.00025668 -0.42373 -0.00026264 -0.83784 -0.00051932 619.8256975516281 36.484 0.2284 36.234 36.086 36.315 -0.2497 13 10 2 0 0 0 0.056186 1 19153 19153 49.554 35.648 1 2572600 33580 8363 22458 22871 39425 39425 1413 0.028345931142894187 LLYQEGAKMAV 11 Unmodified _LLYQEGAKMAV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8297119140625 2 611.828649 1221.64274 0.76319 0.00046694 0.30013 0.00018363 1.0633 0.00065057 611.8284082500222 54.773 0.31603 48.908 48.729 49.045 -5.8653 29 18 2 0 0 0 8.4394E-07 1 34795 34795 104.48 39.249 1 13418000 33581 8363 22458 22872 39426 39426 0.04078896976920987 LLYQLVFL 8 Unmodified _LLYQLVFL_ 0 0 0 ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-3|IL4R;nc|ENSG00000077238|P24394-2|IL4R ENSG00000077238|ENST00000395762|IL4R ENSG00000077238|ENST00000395762|IL4R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.8080749511719 2 504.810054 1007.60555 NaN NaN NaN NaN NaN NaN NaN 37.762 1 37.49 36.99 37.99 -0.27133 0 0 0 0.88073 1 19853 19853 19.439 1.304 1 33582 1210 22459 22873 39427 39427 0.10205593493469678 LLYSICSSKQ 10 Unmodified _LLYSICSSKQ_ 0 0 0 ENST00000361524.7_1_18:22669477-22671924:-|nuORF ENST00000361524.7_1_18:22669477-22671924:-|nuORF ENST00000361524.7_1_18:22669477-22671924:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2024536132812 3 381.202242 1140.5849 0.24933 9.5045E-05 1.2605 0.00048049 1.5098 0.00057553 381.2026266941826 74.535 0.38255 74.581 74.411 74.793 0.045967 43 16 3 0 0 0 0.65282 1 41154 41154 7.4771 4.4048 1 6983900 33583 12188 22460 22874 39428 39428 0.020226350514803926 LLYSQTALL 9 Unmodified _LLYSQTALL_ 0 0 0 ENST00000025301.3_1_13:42895795-42895891:+|nuORF ENST00000025301.3_1_13:42895795-42895891:+|nuORF ENST00000025301.3_1_13:42895795-42895891:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.301025390625 2 511.30005 1020.58555 -0.47473 -0.00024273 0.52743 0.00026967 0.052694 2.6943E-05 511.3002339124143 61.237 0.80672 60.748 60.537 61.343 -0.48932 123 38 5 0 0 0 0.46577 1 33652 33652 9.3474 0 1 234240000 33584 10968 22461 22875 39429 39429 0.07607797762852897 LLYSYALNIL 10 Unmodified _LLYSYALNIL_ 0 0 0 ENST00000556631.1_1_14:56139269-56139539:+|nuORF ENST00000556631.1_1_14:56139269-56139539:+|nuORF ENST00000556631.1_1_14:56139269-56139539:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8963623046875 3 394.897147 1181.66961 0.025035 9.8861E-06 -2.2941 -0.00090594 -2.2691 -0.00089605 394.8960574086991 34.113 0.25076 34.142 34.036 34.287 0.028931 19 11 2 0 0 0 0.63089 1 18018 18018 9.544 1.935 1 1956300 33585 15243 22462 22876 39430 39430 0.08604328859746602 LLYVDTTNLLR 11 Unmodified _LLYVDTTNLLR_ 0 0 0 REV__ENSG00000108582|ENST00000225719|CPD REV__ENSG00000108582|ENST00000225719|CPD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.9213256835938 3 440.922244 1319.7449 NaN NaN NaN NaN NaN NaN NaN 26.276 1 26.303 25.803 26.803 0.026951 0 0 0 0.94196 1 13626 13626 1.1098 0 1 + 33586 18617 22463 22877 39431 39431 0.09781886320160993 LLYVNYTSI 9 Unmodified _LLYVNYTSI_ 0 0 0 ENST00000264951.8_1_3:142030117-142030201:-|nuORF ENST00000264951.8_1_3:142030117-142030201:-|nuORF ENST00000264951.8_1_3:142030117-142030201:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3395385742188 2 543.297507 1084.58046 0.55948 0.00030397 1.6405 0.00089125 2.1999 0.0011952 543.7994423450289 69.073 0.3633 69.104 68.886 69.249 0.030914 33 17 2 0 0 0 0.19891 1 37919 37919 11.64 0.81637 1 2834200 33587 11321 22464 22878 39432 39432 0.04155493900225338 LLYVVTFLVF 10 Unmodified _LLYVVTFLVF_ 0 0 0 REV__ENSG00000196832|ENST00000641879|OR11G2 REV__ENSG00000196832|ENST00000641879|OR11G2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3670043945312 2 607.365193 1212.71583 NaN NaN NaN NaN NaN NaN NaN 100.11 1 100.07 99.571 100.57 -0.036301 0 0 0 0.3517 1 55601 55601 34.102 13.649 1 + 33588 23873 22465 22879 39433 39433 0.1179839376181917 LLYVVTFLVF 10 Unmodified _LLYVVTFLVF_ 0 0 0 REV__ENSG00000196832|ENST00000641879|OR11G2 REV__ENSG00000196832|ENST00000641879|OR11G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3637084960938 2 607.365193 1212.71583 0.89953 0.00054634 -4.1225 -0.0025038 -3.2229 -0.0019575 607.3623763407168 101.16 0.064972 94.983 94.939 95.004 -6.1757 5 3 2 0 0 0 0.13184 1 67828 67828 42.095 7.9921 1 18751000 + 33589 23873 22465 22879 39434 39434 0.1179839376181917 LLYWEDPD 8 Unmodified _LLYWEDPD_ 0 0 0 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7426147460938 2 525.742565 1049.47058 0.37362 0.00019643 -1.4918 -0.00078432 -1.1182 -0.00058789 525.7421813453592 87.895 0.40729 87.39 87.195 87.602 -0.50423 42 18 3 0 0 0 0.5953 1 48122 48122 26.341 4.5946 1 3078200 33590 2923 22466 22880 39435 39435 -0.052179314389377396 LLYWETNSL 9 Unmodified _LLYWETNSL_ 0 0 0 ENSG00000127249|ENST00000342695|ATP13A4;ATP13A4|p.M1027Nfs*4|1|0.07|ENSG00000127249|chr3:193412306-193412307|-/T|frameshift_variant ENSG00000127249|ENST00000342695|ATP13A4 ENSG00000127249|ENST00000342695|ATP13A4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 569.2901000976562 2 569.792589 1137.57063 0.986 0.00056182 -1.2007 -0.00068415 -0.2147 -0.00012234 569.7921353127498 75.177 0.10085 69.002 68.943 69.044 -6.1757 8 5 2 0 0 0 0.19298 1 49122 49122 8.5933 2.8614 1 6294800 33591 3994 22467 22881 39436 39436 0.0073430589486633835 LMAAMAWTVY 10 Unmodified _LMAAMAWTVY_ 0 0 0 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.1884460449219 3 386.189168 1155.54567 0.061752 2.3848E-05 -0.49203 -0.00019002 -0.43027 -0.00016617 386.1889898435881 20.826 0.67938 20.837 20.308 20.988 0.010551 62 35 2 0 0 0 0.69064 1 10702 10702 1.9064 0 1 1478400 33592 5629 22468 22882 39437 39437 -0.02587788503728916 LMAGLPTALPM 11 Unmodified _LMAGLPTALPM_ 0 0 0 ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A;ENST00000514410.1_1_5:6750532-6751388:+|nuORF ENST00000514697.1_1_5:6746314-6755055:+|nuORF ENST00000514697.1_1_5:6746314-6755055:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.8048706054688 2 557.803588 1113.59262 NaN NaN NaN NaN NaN NaN NaN 100.06 1 93.886 93.386 94.386 -6.1757 0 0 0 0.022752 1 66826 66826 71.134 11.06 1 33593 2931 22469 22883 39438 39438 0.040370710474007865 LMAHAMEEV 9 Unmodified _LMAHAMEEV_ 0 0 0 nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;ENST00000307714.12_1_1:32479575-32503673:+|nuORF nc|ENSG00000121774|Q07666-3|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7387084960938 2 515.738445 1029.46234 0.82813 0.0004271 -0.13577 -7.0021E-05 0.69236 0.00035708 515.73814340111 42.388 0.30102 37.703 37.544 37.845 -4.6846 35 19 2 0 0 0 0.12841 1 25561 25561 30.225 10.786 1 14950000 33594 3599 22470 22884 39439 39439 -0.051215249515735195 LMAHPFLLL 9 Unmodified _LMAHPFLLL_ 0 0 0 nc|ENSG00000290456|Q8N1L4|CYP4Z2P;nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1 nc|ENSG00000290456|Q8N1L4|CYP4Z2P nc|ENSG00000290456|Q8N1L4|CYP4Z2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.2093200683594 3 352.208779 1053.60451 0.55732 0.00019629 0.57847 0.00020374 1.1358 0.00040003 352.2088911553232 47.832 0.18782 47.479 47.347 47.535 -0.3526 11 8 2 0 0 0 0.46501 1 25639 25639 9.3831 0 1 3029100 33595 16632 22471 22885 39440 39440 0.07985055852941514 LMALVTQGDPV 11 Unmodified _LMALVTQGDPV_ 0 0 0 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 MSMS AL20221201_MKP_PDAC_01 4 572.3065795898438 2 572.307549 1142.60055 NaN NaN NaN NaN NaN NaN NaN 41.489 1 36.881 36.381 37.381 -4.6079 0 0 0 0.21937 1 24924 24924 38.176 0 1 33596 5167 22472 22886 39441 39441 0.034949215685401214 LMAPDSTQTRF 11 Unmodified _LMAPDSTQTRF_ 0 0 0 REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF REV__ENST00000482968.1_1_1:120282927-120286660:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2102355957031 3 422.876417 1265.60742 0.7648 0.00032341 0.41814 0.00017682 1.1829 0.00050023 422.876755334997 45.029 0.75202 40.177 39.662 40.414 -4.852 150 55 5 0 0 0 0.69155 1 27195 27195 5.0475 0 1 493720000 + 33597 17914 22473 22887 39442 39442 -0.014757655509129108 LMAREDLESKY 11 Unmodified _LMAREDLESKY_ 0 0 0 REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8362426757812 2 677.837202 1353.65985 0.25671 0.00017401 -1.2324 -0.00083536 -0.97568 -0.00066135 677.8358508537134 49.354 0.82185 49.354 48.952 49.773 0 91 38 3 0 0 0 0.30985 3 27100 26976;27100;27219 26.268 13.396 1 6948100 + 33598 26587 22474 22888 39443;39444;39445 39444 -0.0028322720795586065 LMAREDLESKY 11 Unmodified _LMAREDLESKY_ 0 0 0 REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8359985351562 2 677.837202 1353.65985 0.76832 0.0005208 -1.4922 -0.0010115 -0.72391 -0.0004907 677.8355975107979 49.813 1.0295 49.421 48.902 49.931 -0.3923 109 51 3 0 0 0 0.30985 4 26723 26613;26723;26837;26945 26.268 14.027 1 7413100 + 33599 26587 22474 22888 39446;39447;39448;39449 39447 -0.0028322720795586065 LMAREDLESKY 11 Unmodified _LMAREDLESKY_ 0 0 0 REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF REV__ENST00000399720.4_1_4:49490601-49491475:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.3372192382812 2 677.837202 1353.65985 0.76832 0.0005208 -1.4922 -0.0010115 -0.72391 -0.0004907 677.8355975107979 49.813 1.0295 49.421 48.902 49.931 -0.3923 109 51 3 0 0 0 0.27675 1 26613 26613 20.415 8.1739 1 7413100 + 33600 26587 22474 22888 39450 39450 -0.0028322720795586065 LMCEKRIFE 9 Unmodified _LMCEKRIFE_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-3|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MSMS AL20221201_MKP_PDAC_01 4 584.7944946289062 2 584.796294 1167.57804 NaN NaN NaN NaN NaN NaN NaN 72.938 1 66.762 66.262 67.262 -6.1757 0 0 0 0.18351 1 47708 47708 32.786 4.2912 1 33601 895 22475 22889 39451 39451 0.0009499889927155891 LMCFLGFGSY 10 Unmodified _LMCFLGFGSY_ 0 0 0 ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;nc|ENSG00000118855|Q9H3U5-2|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2603759765625 2 569.259013 1136.50347 0.47287 0.00026918 1.6075 0.0009151 2.0804 0.0011843 569.2599811947898 68.37 0.69867 68.37 68.165 68.864 0 75 31 4 0 0 0 0.6606 1 38045 38045 7.2892 0.56607 1 4721800 33602 3396 22476 22890 39452 39452 -0.05931763912099086 LMDDLDKV 8 Unmodified _LMDDLDKV_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7397155761719 2 474.738968 947.463383 0.56839 0.00026984 0.13696 6.5019E-05 0.70534 0.00033485 474.73942190482484 89.126 0.33527 88.621 88.416 88.751 -0.50423 30 14 3 0 0 0 0.80799 1 48789 48789 1.8442 0 1 608620 33603 1195 22477 22891 39453 39453 -0.012449873110199405 LMDEDEDTI 9 Unmodified _LMDEDEDTI_ 0 0 0 REV__nc|ENSG00000258992|Q01534-2|TSPY1 REV__nc|ENSG00000258992|Q01534-2|TSPY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2716064453125 2 540.723712 1079.43287 0.49065 0.00026531 1.5908 0.00086018 2.0814 0.0011255 540.7239677443673 59.703 0.32466 59.703 59.555 59.879 0 21 14 2 0 0 0 0.19613 1 33317 33317 7.9102 1.187 1 1756800 + 33604 22339 22478 22892 39454 39454 -0.10366810486721079 LMDGNMGAYII 11 Unmodified _LMDGNMGAYII_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2849731445312 2 599.28576 1196.55697 0.52859 0.00031677 -2.3803 -0.0014265 -1.8517 -0.0011097 599.2840230799407 101.19 0.073357 95.018 94.99 95.064 -6.1757 6 4 2 0 0 0 0.33405 1 67884 67884 24.991 1.8425 1 17890000 33605 5131 22479 22893 39455 39455 -0.033450112002356036 LMDHTIPEV 9 Oxidation (M) _LM(Oxidation (M))DHTIPEV_ LM(1)DHTIPEV LM(48)DHTIPEV 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7626342773438 2 535.762975 1069.5114 0.048551 2.6012E-05 -0.32082 -0.00017188 -0.27227 -0.00014587 535.7628056738212 40.387 0.53585 40.387 39.993 40.529 0 84 26 5 0 0 0 0.042911 1 21736 21736 48.346 7.8973 1 88528000 33606 4949 22480 22894 39456 39456 900 -0.020579133909905067 LMDHTIPEV 9 Oxidation (M) _LM(Oxidation (M))DHTIPEV_ LM(1)DHTIPEV LM(48)DHTIPEV 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7621459960938 2 535.762975 1069.5114 0.51273 0.0002747 0.044082 2.3618E-05 0.55681 0.00029832 535.7628373554371 40.722 0.30901 40.419 40.214 40.523 -0.30304 27 14 3 0 0 0 0.042911 1 21523 21523 48.346 7.8973 1 2821700 33607 4949 22480 22894 39457 39457 900 -0.020579133909905067 LMDHTIPEV 9 Unmodified _LMDHTIPEV_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7662353515625 2 527.765517 1053.51648 0.94428 0.00049836 -0.031614 -1.6685E-05 0.91267 0.00048167 527.7656168349339 55.671 0.51576 49.75 49.49 50.006 -5.9211 111 30 5 0 0 0 0.026094 1 35472 35472 57.471 9.1255 1 128200000 33608 4949 22480 22895 39458 39458 -0.008136095283589384 LMDQSRFHEL 10 Unmodified _LMDQSRFHEL_ 0 0 0 ENSG00000176148|ENST00000334274|TCP11L1 ENSG00000176148|ENST00000334274|TCP11L1 ENSG00000176148|ENST00000334274|TCP11L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8773803710938 3 425.876529 1274.60776 1.3028 0.00055484 0.59648 0.00025402 1.8993 0.00080887 425.8768140955656 19.812 0.54977 17.155 16.955 17.505 -2.6564 83 34 3 0 0 0 0.54684 1 10587 10587 8.4443 0 1 7820500 33609 8568 22481 22896 39459 39459 -0.018563458309927228 LMDQVMVYE 9 Unmodified _LMDQVMVYE_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3031005859375 2 564.25921 1126.50387 0.62294 0.0003515 0.89127 0.00050291 1.5142 0.00085441 564.2597198045211 89.269 0.43487 88.765 88.543 88.978 -0.50397 47 18 3 0 0 0 0.20727 1 48775 48775 7.9102 0 1 1600900 + 33610 22625 22482 22897 39460 39460 -0.05432388982899283 LMDTASLY 8 Oxidation (M) _LM(Oxidation (M))DTASLY_ LM(1)DTASLY LM(54)DTASLY 0 0 1 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2174987792969 2 465.217869 928.421184 0.3916 0.00018218 -0.52872 -0.00024597 -0.13713 -6.3793E-05 465.21765101932203 85.423 0.56086 84.921 84.715 85.276 -0.5015 84 46 2 0 0 0 0.31612 1 46706 46706 53.576 19.388 1 6446100 + 33611 19800 22483 22898 39461 39461 1840 -0.045889627193901106 LMDVCFGEYR 10 Unmodified _LMDVCFGEYR_ 0 0 0 REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5187377929688 3 411.519465 1231.53657 -0.80456 -0.00033109 -0.044944 -1.8495E-05 -0.8495 -0.00034959 411.51955852895804 27.961 0.59243 27.961 27.659 28.251 0 76 32 3 0 0 0 0.64628 1 14442 14442 5.0475 0 1 5519500 + 33612 20995 22484 22899 39462 39462 -0.06994181860068238 LMDWFEQL 8 Unmodified _LMDWFEQL_ 0 0 0 REV__nc|ENSG00000165566|Q8N7J2-2|AMER2 REV__nc|ENSG00000165566|Q8N7J2-2|AMER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2564086914062 2 541.254785 1080.49502 0.31801 0.00017212 1.6329 0.00088384 1.951 0.001056 541.2555058749698 85.781 0.50922 85.28 85.114 85.623 -0.5015 34 21 2 0 0 0 0.80676 1 47079 47079 2.5775 0.27475 1 620460 + 33613 22021 22485 22900 39463 39463 -0.042009945570725904 LMEDAVHKPL 10 Unmodified _LMEDAVHKPL_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8740844726562 3 384.874236 1151.60088 0.57249 0.00022034 -1.3206 -0.00050825 -0.74808 -0.00028792 384.87373264218405 14.794 0.12161 12.266 12.221 12.343 -2.5273 38 21 2 0 0 0 0.65023 1 7539 7539 8.4443 0.83535 1 1936700 + 33614 20292 22486 22901 39464 39464 0.031143412884148347 LMEEDAEPIFE 11 Unmodified _LMEEDAEPIFE_ 0 0 0 ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000118007|ENST00000383202|STAG1 ENSG00000118007|ENST00000383202|STAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.7933959960938 2 661.794669 1321.57478 1.3764 0.00091089 -1.3719 -0.00090792 0.0044807 2.9653E-06 661.7936200906264 70.895 1.2155 70.931 70.401 71.617 0.035507 106 55 2 0 0 0 0.46578 1 39024 39024 18.146 1.0335 1 3352500 33615 3346 22487 22902 39465 39465 -0.07314017464409517 LMEENRYNH 9 Unmodified _LMEENRYNH_ 0 0 0 REV__ENSG00000185272|ENST00000400577|RBM11 REV__ENSG00000185272|ENST00000400577|RBM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.51708984375 3 402.517112 1204.52951 0.21358 8.597E-05 1.0314 0.00041517 1.245 0.00050114 402.5175087366382 41.132 0.24915 40.829 40.697 40.946 -0.30304 26 11 3 0 0 0 0.53666 1 21749 21749 2.9952 0.90923 1 4200600 + 33616 23489 22488 22903 39466 39466 -0.06457778416256588 LMEENRYNH 9 Unmodified _LMEENRYNH_ 0 0 0 REV__ENSG00000185272|ENST00000400577|RBM11 REV__ENSG00000185272|ENST00000400577|RBM11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 402.517112 1204.52951 0.21358 8.597E-05 1.0314 0.00041517 1.245 0.00050114 402.5175087366382 41.132 0.24915 40.829 40.697 40.946 -0.30304 0.011187 0.00012402 NaN 2.9952 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4200600 + 33617 23489 22488 22903 -0.06457778416256588 LMEENRYNH 9 Unmodified _LMEENRYNH_ 0 0 0 REV__ENSG00000185272|ENST00000400577|RBM11 REV__ENSG00000185272|ENST00000400577|RBM11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 402.517112 1204.52951 0.15112 6.0828E-05 0.82783 0.00033322 0.97895 0.00039404 402.51753548291873 40.808 0.2204 40.806 40.711 40.931 -0.0017891 -0.011187 -0.00012185 NaN 2.9952 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3882900 + 33618 23489 22488 22903 -0.06457778416256588 LMEGELPASMS 11 Unmodified _LMEGELPASMS_ 0 0 0 ENSG00000197776|ENST00000359332|KLHDC1;ENST00000555704.5_1_14:50159830-50218487:+|nuORF ENSG00000197776|ENST00000359332|KLHDC1 ENSG00000197776|ENST00000359332|KLHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7703247070312 2 582.7674 1163.52025 1.4883 0.00086735 1.2012 0.00070005 2.6896 0.0015674 582.7680239950977 47.079 1.3352 47.046 46.834 48.169 -0.033417 185 65 6 0 0 0 0.48615 1 25612 25612 17.113 0 1 3388999999.9999995 33619 10003 22489 22904 39467 39467 -0.054973078168131906 LMEGQQKHLRE 11 Unmodified _LMEGQQKHLRE_ 0 0 0 REV__ENSG00000171467|ENST00000361428|ZNF318 REV__ENSG00000171467|ENST00000361428|ZNF318 MSMS AL20221201_MKP_PDAC_01 4 456.9051513671875 3 456.906599 1367.69797 NaN NaN NaN NaN NaN NaN NaN 46.431 1 41.35 40.85 41.85 -5.0805 0 0 0 0.8789 1 28674 28674 8.2864 2.4183 1 + 33620 22563 22490 22905 39468 39468 0.028827034973801346 LMEHIHKL 8 Oxidation (M) _LM(Oxidation (M))EHIHKL_ LM(1)EHIHKL LM(79)EHIHKL 0 0 1 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7841186523438 2 518.784044 1035.55354 NaN NaN NaN NaN NaN NaN NaN 25.562 1 25.545 25.045 26.045 -0.017006 0 0 0 0.25009 1 13108 13108 78.728 21.257 1 33621 2556 22491 22906 39469 39469 441 0.03718106808059929 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7872619628906 2 510.786587 1019.55862 NaN NaN NaN NaN NaN NaN NaN 33.913 1 33.721 33.221 34.221 -0.19131 0 0 0 0.6528 1 17699 17699 30.637 15.798 1 33622 2556 22491 22907 39470 39470 0.0496241067066876 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2882385253906 2 510.786587 1019.55862 0.3541 0.00018087 -0.64259 -0.00032822 -0.28848 -0.00014735 510.78641640999683 33.596 0.213 33.625 33.483 33.696 0.028934 22 9 3 0 0 0 0.14033 1 17657 17657 88.954 36.686 1 3915100 33623 2556 22491 22907 39471 39471 0.0496241067066876 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2881164550781 2 510.786587 1019.55862 0.71104 0.00036319 -0.13876 -7.0879E-05 0.57227 0.00029231 510.78638324101814 75.124 0.69902 68.948 68.495 69.194 -6.1757 61 37 2 0 0 0 0.1875 3 49013 48868;49013;49142 74.929 26.583 1 12612000 33624 2556 22491 22907 39472;39473;39474 39473 0.0496241067066876 LMEHIHKL 8 Unmodified _LMEHIHKL_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.2352600097656 2 510.786587 1019.55862 0.59944 0.00030618 -0.89641 -0.00045787 -0.29697 -0.00015169 510.786056005732 38.231 0.35621 33.862 33.702 34.058 -4.3689 57 21 3 0 0 0 8.7369 1 22570 22570 53.833 28.433 1 85895000 33625 2556 22491 22907 39475 39475 0.0496241067066876 LMEIDQKKP 9 Unmodified _LMEIDQKKP_ 0 0 0 ENSG00000155849|ENST00000310758|ELMO1;ENST00000463390.1_1_7:37311430-37382294:-|nuORF ENSG00000155849|ENST00000310758|ELMO1 ENSG00000155849|ENST00000310758|ELMO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3021850585938 2 551.302267 1100.58998 NaN NaN NaN NaN NaN NaN NaN 97.093 1 96.85 96.35 97.35 -0.24277 0 0 0 0.85798 1 53021 53021 0.52476 0.12405 1 33626 6409 22492 22908 39476 39476 0.04370938914121325 LMEMLDELT 9 Unmodified _LMEMLDELT_ 0 0 0 REV__ENST00000499137.6_1_12:93960704-93965378:-|nuORF REV__ENST00000499137.6_1_12:93960704-93965378:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5077514648438 3 365.508454 1093.50353 1.1185 0.00040881 -2.7862 -0.0010184 -1.6678 -0.00060959 365.50717391526956 100.63 0.099388 94.457 94.389 94.488 -6.1757 11 6 2 0 0 0 0.32235 1 67363 67363 16.149 5.8339 1 14958000 + 33627 28001 22493 22909 39477 39477 -0.0394780870278737 LMENNRNQMI 10 Unmodified _LMENNRNQMI_ 0 0 0 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 ENSG00000198938|ENST00000362079|MT-CO3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5534973144531 3 421.537518 1261.59073 0.34539 0.0001456 -2.6053 -0.0010982 -2.2599 -0.00095265 421.53633325345635 72.074 0.17491 72.113 71.954 72.129 0.039024 10 8 2 0 0 0 0.23966 1 39613 39613 3.3196 0 1 921680 33628 10205 22494 22910 39478 39478 -0.029605897084820754 LMEQGIQEDEQ 11 Unmodified _LMEQGIQEDEQ_ 0 0 0 nc|ENSG00000101311|Q9BQL6-4|FERMT1;nc|ENSG00000101311|Q9BQL6-2|FERMT1;ENSG00000101311|ENST00000217289|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 nc|ENSG00000101311|Q9BQL6-4|FERMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.2940063476562 2 660.292824 1318.5711 0.89394 0.00059026 0.72812 0.00048077 1.6221 0.001071 660.2933383879246 90.43 0.5853 90.473 90.188 90.773 0.042183 45 20 3 0 0 0 0.63851 1 50385 50385 9.3831 4.0862 1 10677000 33629 1944 22495 22911 39479 39479 -0.0754468723825994 LMEQRWHNFNR 11 Unmodified _LMEQRWHNFNR_ 0 0 0 REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF REV__ENST00000550735.6_1_12:112337947-112339324:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2516479492188 3 510.91761 1529.731 -0.5286 -0.00027007 -0.85853 -0.00043864 -1.3871 -0.00070871 511.25156993088603 20.74 0.19787 20.768 20.622 20.82 0.028357 9 8 2 0 0 0 0.73992 1 10524 10524 0.50596 0.34663 1 539440 + 33630 28707 22496 22912 39480 39480 -0.012676696599100978 LMESDFEFE 9 Unmodified _LMESDFEFE_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7378540039062 2 573.736622 1145.45869 0.65272 0.00037449 0.86656 0.00049718 1.5193 0.00087167 573.7367598664227 85.57 0.35777 85.068 84.964 85.322 -0.5015 44 25 2 0 0 0 0.58865 1 46788 46788 2.0598 0.86641 1 1938300 33631 1116 22497 22913 39481 39481 -0.1082191624443567 LMESDFEFE 9 Unmodified _LMESDFEFE_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 573.736622 1145.45869 -0.16194 -9.2912E-05 3.9194 0.0022487 3.7574 0.0021558 574.2393808557385 85.058 0.091034 85.121 85.073 85.164 0.063171 0.02672 0.0032593 NaN 2.0598 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2836500 33632 1116 22497 22913 -0.1082191624443567 LMESITHAVF 10 Unmodified _LMESITHAVF_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.295166015625 2 574.294442 1146.57433 0.60961 0.0003501 0.86474 0.00049662 1.4744 0.00084671 574.2948974338703 83.153 0.36143 83.216 82.995 83.357 0.063171 39 13 4 0 0 0 0.19662 1 45970 45970 34.102 6.4736 1 13751000 33633 2375 22498 22914 39482 39482 0.00690652397042868 LMESITHAVF 10 Unmodified _LMESITHAVF_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.295654296875 2 574.294442 1146.57433 NaN NaN NaN NaN NaN NaN NaN 83.297 1 83.36 82.86 83.86 0.063171 0 0 0 0.71851 1 46081 46081 15.847 1.2655 1 33634 2375 22498 22914 39483 39483 0.00690652397042868 LMESITHAVF 10 Unmodified _LMESITHAVF_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7967529296875 2 574.294442 1146.57433 0.69166 0.00039722 -0.1735 -9.9642E-05 0.51816 0.00029758 574.2942127318008 98.625 0.15633 92.449 92.378 92.535 -6.1757 16 11 2 0 0 0 0.42068 1 65483 65483 20.454 1.1966 1 40285000 33635 2375 22498 22914 39484 39484 0.00690652397042868 LMEWLKGTL 9 Unmodified _LMEWLKGTL_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2053527832031 3 364.203694 1089.58925 1.4842 0.00054056 1.508 0.00054921 2.9922 0.0010898 364.20415996043346 42.361 0.25812 37.676 37.521 37.779 -4.6846 31 16 4 0 0 0 0.32871 1 25550 25550 20.415 11.97 1 18024000 + 33636 23166 22499 22915 39485 39485 0.048041442650628596 LMFFCFFFKLY 11 Unmodified _LMFFCFFFKLY_ 0 0 0 ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF ENST00000367210.2_2_1:203771721-203771835:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 753.3754272460938 2 753.371638 1504.72872 NaN NaN NaN NaN NaN NaN NaN 92.479 1 86.303 85.803 86.803 -6.1757 0 0 0 0.67092 1 61160 61160 18.146 1.0335 1 33637 12228 22500 22916 39486 39486 -0.003452344419201836 LMFFLLGTTIL 11 Unmodified _LMFFLLGTTIL_ 0 0 0 nc|ENSG00000171121|Q9NPA1-4|KCNMB3;ENSG00000171121|ENST00000392685|KCNMB3;nc|ENSG00000171121|Q9NPA1-2|KCNMB3;nc|ENSG00000171121|Q9NPA1|KCNMB3;nc|ENSG00000171121|Q9NPA1-5|KCNMB3 nc|ENSG00000171121|Q9NPA1-4|KCNMB3 nc|ENSG00000171121|Q9NPA1-4|KCNMB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5821838378906 3 423.582282 1267.72502 NaN NaN NaN NaN NaN NaN NaN 35.859 1 35.884 35.384 36.384 0.024967 0 0 0 0.93648 1 18976 18976 5.0475 2.2042 1 33638 8064 22501 22917 39487 39487 0.10186419055889928 LMFHRLKI 8 Unmodified _LMFHRLKI_ 0 0 0 SETD2|p.R1879H|1|0.04|ENSG00000181555|chr3:47084144-47084144|C/T|missense_variant SETD2|p.R1879H|1|0.04|ENSG00000181555|chr3:47084144-47084144|C/T|missense_variant SETD2|p.R1879H|1|0.04|ENSG00000181555|chr3:47084144-47084144|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 529.3221435546875 2 529.320597 1056.62664 NaN NaN NaN NaN NaN NaN NaN 105.12 1 98.941 98.441 99.441 -6.1757 0 0 0 0.97444 1 70403 70403 0.79363 0 1 33639 30159 22502 22918 39488 39488 0.1005928032132033 LMFHRQWSV 9 Unmodified _LMFHRQWSV_ 0 0 0 ENST00000589225.5_1_17:76793370-76793733:-|nuORF ENST00000589225.5_1_17:76793370-76793733:-|nuORF ENST00000589225.5_1_17:76793370-76793733:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.8075561523438 2 602.308218 1202.60188 0.73933 0.00044531 3.1527 0.0018989 3.892 0.0023442 602.31279216397 97.737 0.53935 91.562 91.261 91.8 -6.1757 150 33 6 0 0 0 0.28047 1 64828 64828 18.135 1.0221 1 263060000 33640 15668 22503 22919 39489 39489 0.008686004479386611 LMFLVKVFTVI 11 Unmodified _LMFLVKVFTVI_ 0 0 0 ENST00000321728.11_2_16:24231693-24231792:+|nuORF ENST00000321728.11_2_16:24231693-24231792:+|nuORF ENST00000321728.11_2_16:24231693-24231792:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 655.4017944335938 2 655.401253 1308.78795 NaN NaN NaN NaN NaN NaN NaN 22.116 1 19.381 18.881 19.881 -2.7348 0 0 0 0.92174 1 11883 11883 7.609 0 1 33641 11776 22504 22920 39490 39490 0.14590984843903243 LMFMPRDELYT 11 Unmodified _LMFMPRDELYT_ 0 0 0 REV__ENSG00000134013|ENST00000389131|LOXL2 REV__ENSG00000134013|ENST00000389131|LOXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.5607604980469 3 472.561441 1414.66249 0.035224 1.6646E-05 -0.43534 -0.00020572 -0.40011 -0.00018908 472.561559699963 51.788 0.24087 51.729 51.573 51.814 -0.058918 38 11 4 0 0 0 0.63851 1 28018 28018 7.4771 6.0219 1 4790200 + 33642 19947 22505 22921 39491 39491 -0.02825095074604178 LMFMPRDELYT 11 Unmodified _LMFMPRDELYT_ 0 0 0 REV__ENSG00000134013|ENST00000389131|LOXL2 REV__ENSG00000134013|ENST00000389131|LOXL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 472.561441 1414.66249 0.035224 1.6646E-05 -0.43534 -0.00020572 -0.40011 -0.00018908 472.561559699963 51.788 0.24087 51.729 51.573 51.814 -0.058918 0.038579 -0.00013051 NaN 7.4771 38 11 4 NaN NaN NaN NaN 0 NaN NaN 0 4790200 + 33643 19947 22505 22921 -0.02825095074604178 LMFTKWAL 8 Unmodified _LMFTKWAL_ 0 0 0 ENST00000367166.4_1_6:155619688-155632440:-|nuORF ENST00000367166.4_1_6:155619688-155632440:-|nuORF ENST00000367166.4_1_6:155619688-155632440:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2807312011719 2 505.280606 1008.54666 NaN NaN NaN NaN NaN NaN NaN 81.116 1 80.623 80.123 81.123 -0.49247 0 0 0 0.94749 1 44419 44419 11.114 0 1 33644 12224 22506 22922 39492 39492 0.042727939274755045 LMFTQLLLCGF 11 Unmodified _LMFTQLLLCGF_ 0 0 0 nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;ENSG00000185008|ENST00000696593|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 nc|ENSG00000185008|Q9HCK4-2|ROBO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.228271484375 3 429.227622 1284.66104 0.38148 0.00016374 0.95621 0.00041043 1.3377 0.00057417 429.2281365205173 65.652 0.57327 59.477 58.968 59.541 -6.1757 74 32 3 0 0 0 0.47137 1 42424 42424 17.863 0.81459 1 25454000 33645 9316 22507 22923 39493 39493 0.030093156272641863 LMGDANWWYIS 11 Unmodified _LMGDANWWYIS_ 0 0 0 REV__ENST00000259486.10_1_8:120596034-120598489:-|nuORF REV__ENST00000259486.10_1_8:120596034-120598489:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.5422973632812 3 452.541146 1354.60161 NaN NaN NaN NaN NaN NaN NaN 17.787 1 17.787 17.287 18.287 0 0 0 0 0.93933 1 8793 8793 1.2148 0 1 + 33646 24951 22508 22924 39494 39494 -0.061508640625561384 LMGKLEVF 8 Unmodified _LMGKLEVF_ 0 0 0 ENST00000455321.1_1_10:52486845-52487529:-|nuORF ENST00000455321.1_1_10:52486845-52487529:-|nuORF ENST00000455321.1_1_10:52486845-52487529:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7647094726562 2 468.764789 935.515025 0.70464 0.00033031 0.20996 9.8421E-05 0.9146 0.00042873 468.76499328255386 74.588 0.30389 74.112 73.954 74.258 -0.47588 27 12 3 0 0 0 0.72953 1 40836 40836 14.582 5.2343 1 750110 33647 13582 22509 22925 39495 39495 0.0446880117353885 LMGKLEVF 8 Unmodified _LMGKLEVF_ 0 0 0 ENST00000455321.1_1_10:52486845-52487529:-|nuORF ENST00000455321.1_1_10:52486845-52487529:-|nuORF ENST00000455321.1_1_10:52486845-52487529:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 468.764789 935.515025 0.24047 0.00011272 0.78479 0.00036788 1.0253 0.00048061 468.7650313808296 73.957 0.15258 74.001 73.943 74.096 0.043983 -0.05564 0.00019415 NaN 14.582 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 792650 33648 13582 22509 22925 0.0446880117353885 LMGLLLAVE 9 Unmodified _LMGLLLAVE_ 0 0 0 REV__nc|ENSG00000115970|Q6YHU6-2|THADA REV__nc|ENSG00000115970|Q6YHU6-2|THADA MSMS AL20221201_MKP_PDAC_01 4 480.2506713867188 2 479.785721 957.55689 NaN NaN NaN NaN NaN NaN NaN 26.137 1 23.186 22.686 23.686 -2.9511 0 0 0 0.18911 1 14369 14369 32.117 5.7757 1 + 33649 19017 22510 22926 39496 39496 0.07641356862052362 LMGNLEEICSF 11 Unmodified _LMGNLEEICSF_ 0 0 0 nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;ENST00000483189.1_1_13:111893629-111928079:+|nuORF nc|ENSG00000102606|Q14155-5|ARHGEF7 nc|ENSG00000102606|Q14155-5|ARHGEF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.1972351074219 3 419.194758 1254.56245 1.1915 0.00049946 0.63143 0.00026469 1.8229 0.00076416 419.19519885801424 46.867 0.33886 46.833 46.617 46.956 -0.033421 32 16 3 0 0 0 0.65108 1 25247 25247 4.4062 0 1 2716900 33650 2057 22511 22927 39497 39497 -0.054653324084483756 LMGSGVGR 8 Unmodified _LMGSGVGR_ 0 0 0 REV__nc|ENSG00000185379|O75771-6|RAD51D REV__nc|ENSG00000185379|O75771-6|RAD51D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8795471191406 2 388.707805 775.401058 NaN NaN NaN NaN NaN NaN NaN 31.639 1 31.669 31.169 32.169 0.030106 0 0 0 0.97348 1 16586 16586 5.7604 0 1 + 33651 29851 22512 22928 39498 39498 0.004373311313088379 LMGSGVGR 8 Unmodified _LMGSGVGR_ 0 0 0 REV__nc|ENSG00000185379|O75771-6|RAD51D REV__nc|ENSG00000185379|O75771-6|RAD51D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5605773925781 2 388.707805 775.401058 0.34804 0.00013529 0.51298 0.0001994 0.86103 0.00033469 388.70803787307045 40.696 0.24355 40.701 40.593 40.837 0.0050545 22 11 2 0 0 0 8.7369 1 21707 21707 5.7604 0 1 3842700 + 33652 29851 22512 22928 39499 39499 0.004373311313088379 LMIHYRAGI 9 Unmodified _LMIHYRAGI_ 0 0 0 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3052978515625 2 537.299862 1072.58517 0.9312 0.00050033 0.80182 0.00043082 1.733 0.00093115 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.2001 1 52298 52298 23.148 3.8914 1 243440000 33653 7368 22513 22929 39500 39500 0.05178099561999261 LMIIHHLDEC 10 Unmodified _LMIIHHLDEC_ 0 0 0 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5350952148438 3 408.535226 1222.58385 0.042998 1.7566E-05 -0.54997 -0.00022468 -0.50698 -0.00020712 408.53506293579665 55.787 0.32702 55.309 55.132 55.459 -0.47798 32 15 3 0 0 0 0.42068 1 30255 30255 12.873 0.69786 1 3883000 33654 2436 22514 22930 39501 39501 -0.018539025890731864 LMILIAHRL 9 Unmodified _LMILIAHRL_ 0 0 0 REV__nc|ENSG00000138039|P22888-2|LHCGR REV__nc|ENSG00000138039|P22888-2|LHCGR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.56298828125 3 360.563445 1078.66851 0.028126 1.0141E-05 -1.1794 -0.00042523 -1.1512 -0.00041509 360.56283940935134 34.447 0.4842 34.475 34.184 34.668 0.027401 44 22 3 0 0 0 0.61801 1 18128 18128 0.26902 0.033176 1 5185200 + 33655 20294 22515 22931 39502 39502 0.13231836009867948 LMILIAHRL 9 Unmodified _LMILIAHRL_ 0 0 0 REV__nc|ENSG00000138039|P22888-2|LHCGR REV__nc|ENSG00000138039|P22888-2|LHCGR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5632629394531 3 360.563445 1078.66851 -0.29938 -0.00010795 -1.0925 -0.00039392 -1.3919 -0.00050187 360.5630918474017 36.403 0.19912 36.424 36.295 36.494 0.021542 16 8 2 0 0 0 0.61801 1 19277 19277 0.26902 0.26902 1 3324100 + 33656 20294 22515 22931 39503 39503 0.13231836009867948 LMILIAHRL 9 Unmodified _LMILIAHRL_ 0 0 0 REV__nc|ENSG00000138039|P22888-2|LHCGR REV__nc|ENSG00000138039|P22888-2|LHCGR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.563445 1078.66851 0.45456 0.0001639 -1.1136 -0.00040154 -0.65909 -0.00023764 360.5628434745032 36.786 0.147 36.786 36.71 36.857 0 0.18078 -1.9337E-05 NaN 0.26902 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 803410 + 33657 20294 22515 22931 0.13231836009867948 LMILIAHRL 9 Unmodified _LMILIAHRL_ 0 0 0 REV__nc|ENSG00000138039|P22888-2|LHCGR REV__nc|ENSG00000138039|P22888-2|LHCGR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 360.563445 1078.66851 -0.59694 -0.00021523 -0.51644 -0.00018621 -1.1134 -0.00040144 360.56301736217705 34.504 0.23376 34.504 34.402 34.636 0 0.014698 0.00037216 NaN 0.26902 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1447600 + 33658 20294 22515 22931 0.13231836009867948 LMILIAHRL 9 Unmodified _LMILIAHRL_ 0 0 0 REV__nc|ENSG00000138039|P22888-2|LHCGR REV__nc|ENSG00000138039|P22888-2|LHCGR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.563445 1078.66851 -0.29938 -0.00010795 -1.0925 -0.00039392 -1.3919 -0.00050187 360.5630918474017 36.403 0.19912 36.424 36.295 36.494 0.021542 -0.18078 3.5149E-06 NaN 0.26902 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3324100 + 33659 20294 22515 22931 0.13231836009867948 LMILILMKK 9 Unmodified _LMILILMKK_ 0 0 0 ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.241943359375 3 368.241203 1101.70178 NaN NaN NaN NaN NaN NaN NaN 97.826 1 97.826 97.326 98.326 0 0 0 0 0.8622 1 54044 54044 0 0 1 33660 11167 22516 22932 39504 39504 0.1549970173755355 LMILILMKK 9 Unmodified _LMILILMKK_ 0 0 0 ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2405090332031 3 368.241203 1101.70178 NaN NaN NaN NaN NaN NaN NaN 99.129 1 99.129 98.629 99.629 0 0 0 0 0.8622 1 54734 54734 0 0 1 33661 11167 22516 22932 39505 39505 0.1549970173755355 LMILILMKK 9 Unmodified _LMILILMKK_ 0 0 0 ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF ENST00000254803.3_1_4:71555472-71555523:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2412109375 3 368.241203 1101.70178 NaN NaN NaN NaN NaN NaN NaN 99.514 1 99.514 99.014 100.01 0 0 0 0 0.8622 1 54938 54938 0 0 1 33662 11167 22516 22932 39506 39506 0.1549970173755355 LMINLIRF 8 Unmodified _LMINLIRF_ 0 0 0 REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.8064270019531 2 510.307155 1018.59976 0.70562 0.00036008 0.83596 0.00042659 1.5416 0.00078668 510.3077816096939 68.642 0.43553 62.466 62.289 62.725 -6.1757 35 24 2 0 0 0 8.7369 1 44837 44837 24.674 11.166 1 48150000 + 33663 24855 22517 22933 39507 39507 0.09120171710162595 LMIRTAAP 8 Oxidation (M) _LM(Oxidation (M))IRTAAP_ LM(1)IRTAAP LM(48)IRTAAP 0 0 1 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 REV__nc|ENSG00000091128|A4D0S4-3|LAMB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.7533569335938 2 444.752213 887.489873 0.95392 0.00042426 1.5067 0.0006701 2.4606 0.0010944 444.7526059788239 99.167 0.12496 92.991 92.923 93.048 -6.1757 10 6 2 0 0 0 0.36356 1 65980 65980 48.346 12.302 1 19796000 + 33664 17881 22518 22934 39508 39508 1830 0.04162746370957393 LMKEVFEETL 10 Unmodified _LMKEVFEETL_ 0 0 0 REV__ENSG00000107882|ENST00000369902|SUFU REV__ENSG00000107882|ENST00000369902|SUFU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8212890625 2 619.820489 1237.62643 -0.18366 -0.00011384 2.1253 0.0013173 1.9416 0.0012035 619.8218714648458 20.05 0.14669 20.05 19.959 20.106 0 30 16 2 0 0 0 0.59286 1 10041 10041 5.2969 1.7004 1 1872700 + 33665 18583 22519 22935 39509 39509 0.01711771020177366 LMKEVFEETL 10 Unmodified _LMKEVFEETL_ 0 0 0 REV__ENSG00000107882|ENST00000369902|SUFU REV__ENSG00000107882|ENST00000369902|SUFU MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 619.820489 1237.62643 -0.18366 -0.00011384 2.1253 0.0013173 1.9416 0.0012035 619.8218714648458 20.05 0.14669 20.05 19.959 20.106 0 0 0 NaN 5.2969 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1872700 + 33666 18583 22519 22935 0.01711771020177366 LMKFPESRIK 10 Unmodified _LMKFPESRIK_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.9079895019531 3 416.909281 1247.70601 0.069364 2.8918E-05 -2.3753 -0.00099027 -2.3059 -0.00096136 417.2426107948317 77.676 0.21623 77.727 77.56 77.776 0.051712 13 8 2 0 0 0 0.5543 1 42878 42878 13.519 0.66272 1 4374400 + 33667 28364 22520 22936 39510 39510 0.09206882484795642 LMKLKKKLVSV 11 Unmodified _LMKLKKKLVSV_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-4|NIN REV__nc|ENSG00000100503|Q8N4C6-4|NIN MSMS AL20221201_MKP_PDAC_01 4 643.9351806640625 2 643.933251 1285.85195 NaN NaN NaN NaN NaN NaN NaN 98.796 1 92.62 92.12 93.12 -6.1757 0 0 0 0.93224 1 65596 65596 5.7319 4.25 1 + 33668 18075 22521 22937 39511 39511 0.22045765000848405 LMKLLPPPI 9 Unmodified _LMKLLPPPI_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3279113769531 2 511.327556 1020.64056 0.22216 0.0001136 -0.31459 -0.00016086 -0.09243 -4.7262E-05 511.32744615641894 87.502 0.32747 87.555 87.419 87.746 0.053352 27 15 3 0 0 0 0.62242 1 48664 48664 0 0 1 50410000 33669 8565 22522 22938 39512 39512 0.13106513029754296 LMKNVNNTTTL 11 Unmodified _LMKNVNNTTTL_ 0 0 0 REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4 REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.833984375 2 624.834462 1247.65437 0.34795 0.00021741 -2.1872 -0.0013666 -1.8392 -0.0011492 624.833104139469 53.154 0.19566 53.091 53.002 53.198 -0.063423 14 9 2 0 0 0 0.56638 1 28839 28839 13.042 0 1 2159600 + 33670 24362 22523 22939 39513 39513 0.04045094000230165 LMKPSVLSR 9 Unmodified _LMKPSVLSR_ 0 0 0 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8082275390625 2 515.807519 1029.60049 0.65171 0.00033615 -0.97763 -0.00050427 -0.32593 -0.00016812 515.8069079035007 77.81 1.5321 71.634 70.541 72.073 -6.1757 125 86 2 0 0 0 0.08691 5 50635 50635;50767;50894;51028;51154 36.127 0 1 32986000 33671 16108 22524 22940 39514;39515;39516;39517;39518 39514 0.08686966359186954 LMKPTIVSS 9 Unmodified _LMKPTIVSS_ 0 0 0 REV__ENSG00000181518|ENST00000641687|OR8D4;REV__ENSG00000196341|ENST00000641015|OR8D1;REV__ENSG00000197125|ENST00000642064|OR8B8 REV__ENSG00000197125|ENST00000642064|OR8B8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7823181152344 2 488.280803 974.547053 1.2071 0.0005894 1.1161 0.00054495 2.3232 0.0011344 488.2815506808724 53.835 0.716 48.03 47.628 48.344 -5.8042 81 43 3 0 0 0 0.1773 1 33885 33885 25.399 0 1 34922000 + 33672 23208;23790;23898 22525 22941 39519 39519 0.058761688566846715 LMKQELENKRY 11 Unmodified _LMKQELENKRY_ 0 0 0 REV__ENST00000477232.5_1_2:162241962-162267908:+|nuORF REV__ENST00000477232.5_1_2:162241962-162267908:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.3286743164062 3 484.594021 1450.76023 0.65434 0.00031709 -1.453 -0.00070412 -0.79867 -0.00038703 484.9279161170884 44.611 0.37801 39.759 39.557 39.935 -4.852 82 30 3 0 0 0 0.30542 1 27116 27116 1.3296 0 1 63600000 + 33673 18961 22526 22942 39520 39520 0.05288429845700193 LMKSTVFIQ 9 Unmodified _LMKSTVFIQ_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8021850585938 2 533.801903 1065.58925 -0.30796 -0.00016439 -0.79674 -0.0004253 -1.1047 -0.00058969 533.8014254223184 34.067 0.51456 33.876 33.589 34.104 -0.19132 46 19 3 0 0 0 0.171 1 17802 17802 21.537 0.66577 1 4046200 + 33674 22334 22527 22943 39521 39521 0.05908144265072224 LMKVKRIFV 9 Unmodified _LMKVKRIFV_ 0 0 0 REV__ENST00000488297.2_1_5:87678278-87678506:+|nuORF REV__ENST00000488297.2_1_5:87678278-87678506:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5787353515625 3 378.579095 1132.71546 0.25391 9.6124E-05 -1.2308 -0.00046597 -0.97693 -0.00036985 378.5787140569329 39.315 0.23008 39.326 39.217 39.447 0.011456 15 10 2 0 0 0 0.62242 1 20939 20939 0 0 1 1990200 + 33675 27841 22528 22944 39522 39522 0.1544069556098293 LMLAGGQI 8 Unmodified _LMLAGGQI_ 0 0 0 ENST00000470928.3_1_1:167334720-167353117:+|nuORF;ENST00000560232.6_1_1:167301714-167356435:+|nuORF;nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1 ENST00000470928.3_1_1:167334720-167353117:+|nuORF ENST00000470928.3_1_1:167334720-167353117:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.4528198242188 1 802.449136 801.44186 1.5182 0.0012183 0.18023 0.00014462 1.6984 0.0013629 802.4493313363633 102.61 0.061188 96.436 96.404 96.465 -6.1757 23 13 2 0 0 0 0.5284 1 68851 68851 32.117 0 1 5946500 33676 5474 22529 22945 39523 39523 0.03319672450913913 LMLAGTSPMY 10 Unmodified _LMLAGTSPMY_ 0 0 0 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 REV__ENSG00000070731|ENST00000225276|ST6GALNAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2646484375 2 542.264296 1082.51404 0.74083 0.00040172 0.73182 0.00039684 1.4726 0.00079856 542.2645194620865 80.313 0.6742 74.137 73.659 74.334 -6.1757 51 39 2 0 0 0 0.19662 1 52549 52549 34.102 3.4659 1 19123000 + 33677 17478 22530 22946 39524 39524 -0.023917812576655706 LMLDEVQILWK 11 Unmodified _LMLDEVQILWK_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 694.3865966796875 2 694.386331 1386.75811 0.34048 0.00023642 -0.82723 -0.00057442 -0.48675 -0.00033799 694.8872493264031 77.818 0.69128 77.871 77.535 78.226 0.052452 69 28 3 0 0 0 0.53952 3 42852 42852;42982;43101 14.405 3.6059 1 7392700 + 33678 22822;29793 22531 22947 39525;39526;39527 39525 0.08020001107911412 LMLDEVQILWK 11 Unmodified _LMLDEVQILWK_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 694.887451171875 2 694.386331 1386.75811 0.34048 0.00023642 -0.82723 -0.00057442 -0.48675 -0.00033799 694.8872493264031 77.818 0.69128 77.871 77.535 78.226 0.052452 69 28 3 0 0 0 0.28857 1 42982 42982 14.405 2.1647 1 7392700 + 33679 22822;29793 22531 22947 39528 39528 0.08020001107911412 LMLDEVQILWK 11 Unmodified _LMLDEVQILWK_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.385986328125 2 694.386331 1386.75811 0.67375 0.00046785 -0.4402 -0.00030567 0.23356 0.00016218 694.8875397851527 91.865 0.57798 85.689 85.312 85.89 -6.1757 66 32 3 0 0 0 0.44182 1 60745 60745 19.362 3.2128 1 13045000 + 33680 22822;29793 22531 22947 39529 39529 0.08020001107911412 LMLDEVQILWK 11 Unmodified _LMLDEVQILWK_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 694.817626953125 2 694.386331 1386.75811 0.67375 0.00046785 -0.4402 -0.00030567 0.23356 0.00016218 694.8875397851527 91.865 0.57798 85.689 85.312 85.89 -6.1757 66 32 3 0 0 0 0.27931 1 60817 60817 19.362 19.362 1 13045000 + 33681 22822;29793 22531 22947 39530 39530 0.08020001107911412 LMLDRLRWLAD 11 Unmodified _LMLDRLRWLAD_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MSMS AL20221201_MKP_PDAC_01 4 701.3916625976562 2 701.387197 1400.75984 NaN NaN NaN NaN NaN NaN NaN 90.787 1 84.612 84.112 85.112 -6.1757 0 0 0 0.84159 1 59986 59986 10.074 0.6908 1 + 33682 21838 22532 22948 39531 39531 0.0754905491653517 LMLESTTILL 10 Unmodified _LMLESTTILL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5552368164062 3 378.554392 1132.64135 1.2601 0.00047702 0.017783 6.732E-06 1.2779 0.00048376 378.55450571689397 38.233 0.64103 33.864 33.616 34.257 -4.3689 160 39 6 0 0 0 0.33553 1 22652 22652 33.445 10.787 1 1553299999.9999998 + 33683 29815 22533 22949 39532 39532 0.08033262888170611 LMLETLFMP 9 Unmodified _LMLETLFMP_ 0 0 0 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.32568359375 2 547.784864 1093.55518 0.90274 0.00049451 -0.67323 -0.00036879 0.2295 0.00012572 547.7850424649347 51.147 0.47297 45.498 45.264 45.737 -5.649 51 28 2 0 0 0 0.17331 1 32251 32251 12.532 0 1 82495000 + 33684 18981 22534 22950 39533 39533 0.012139797818008446 LMLIFICH 8 Unmodified _LMLIFICH_ 0 0 0 REV__ENST00000267116.7_1_12:56634071-56634437:-|nuORF REV__ENST00000267116.7_1_12:56634071-56634437:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2686462402344 2 495.269184 988.523815 NaN NaN NaN NaN NaN NaN NaN 76.349 1 76.349 75.849 76.849 0 0 0 0 0.97444 1 42454 42454 0.79363 0 1 + 33685 25108 22535 22951 39534 39534 0.02909451538346275 LMLLGNFFYY 10 Unmodified _LMLLGNFFYY_ 0 0 0 REV__ENST00000599275.1_1_19:8326515-8326990:+|nuORF REV__ENST00000599275.1_1_19:8326515-8326990:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 640.5173950195312 2 640.822835 1279.63112 NaN NaN NaN NaN NaN NaN NaN 96.402 1 90.226 89.726 90.726 -6.1757 0 0 0 0.81521 1 63884 63884 11.64 0.81637 1 + 33686 17867 22536 22952 39535 39535 0.002486999536131407 LMLMKITKKK 10 Unmodified _LMLMKITKKK_ 0 0 0 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3922119140625 2 617.392905 1232.77126 -0.35536 -0.00021939 -0.67473 -0.00041657 -1.0301 -0.00063597 617.3924540252656 103.08 0.21103 103.04 102.95 103.16 -0.047928 10 8 2 0 0 0 0.72292 1 57258 57258 0.35063 0 1 680350 + 33687 19406 22537 22953 39536 39536 0.1641816068629396 LMLMKITKKK 10 Unmodified _LMLMKITKKK_ 0 0 0 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 REV__nc|ENSG00000123901|Q9NYM4-2|GPR83 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 617.392905 1232.77126 -0.35536 -0.00021939 -0.67473 -0.00041657 -1.0301 -0.00063597 617.3924540252656 103.08 0.21103 103.04 102.95 103.16 -0.047928 0 0 NaN 0.35063 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 680350 + 33688 19406 22537 22953 0.1641816068629396 LMLPHNIPSSL 11 Unmodified _LMLPHNIPSSL_ 0 0 0 ENST00000569980.1_1_16:57492139-57494533:+|nuORF;ENSG00000088682|ENST00000262507|COQ9 ENST00000569980.1_1_16:57492139-57494533:+|nuORF ENST00000569980.1_1_16:57492139-57494533:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.83740234375 2 611.336641 1220.65873 0.47181 0.00028844 0.72316 0.0004421 1.195 0.00073053 611.3369895298924 75.024 0.9594 75.07 74.387 75.346 0.045959 94 44 3 0 0 0 0.48615 1 41390 41390 17.113 0 1 4682900 33689 1492 22538 22954 39537 39537 0.05722603213826005 LMLPMFGI 8 Unmodified _LMLPMFGI_ 0 0 0 ENSG00000081800|ENST00000194130|SLC13A1 ENSG00000081800|ENST00000194130|SLC13A1 ENSG00000081800|ENST00000194130|SLC13A1 MSMS AL20221201_MKP_PDAC_01 4 461.2523193359375 2 461.25046 920.486367 NaN NaN NaN NaN NaN NaN NaN 91.178 1 85.002 84.502 85.502 -6.1757 0 0 0 0.9185 1 60265 60265 17.087 0 1 33690 1330 22539 22955 39538 39538 0.022943602727650614 LMLQLVKHIA 10 Unmodified _LMLQLVKHIA_ 0 0 0 REV__ENSG00000100297|ENST00000216122|MCM5 REV__ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2418212890625 3 389.242372 1164.70529 0.70888 0.00027593 -1.2017 -0.00046774 -0.49278 -0.00019181 389.2418381767662 64.394 0.67136 64.383 64.173 64.844 -0.010529 76 33 3 0 0 0 0.71276 1 35231 35231 0.62683 0 1 11140000 + 33691 18038 22540 22956 39539 39539 0.12952087835788006 LMLRDERF 8 Unmodified _LMLRDERF_ 0 0 0 ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13 ENSG00000071189|ENST00000428135|SNX13 ENSG00000071189|ENST00000428135|SNX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2858276367188 2 540.286951 1078.55935 -0.11966 -6.4651E-05 -0.4377 -0.00023648 -0.55736 -0.00030113 540.2868367815718 71.008 0.27534 71.008 70.867 71.142 0 29 14 3 0 0 0 0.80624 1 39617 39617 2.8892 0 1 1526600 33692 1053 22541 22957 39540 39540 0.02321205319708497 LMLSPLIF 8 Unmodified _LMLSPLIF_ 0 0 0 REV__ENSG00000184999|ENST00000332793|SLC22A10 REV__ENSG00000184999|ENST00000332793|SLC22A10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7589111328125 2 467.277532 932.540511 -0.27417 -0.00012811 -1.3379 -0.00062517 -1.6121 -0.00075328 467.276613884903 36.498 0.37552 36.519 36.372 36.747 0.021545 32 17 3 0 0 0 8.7369 1 19271 19271 11.114 0 1 5058800 + 33693 23460 22542 22958 39541 39541 0.07154275695972956 LMLSTSSSSFL 11 Unmodified _LMLSTSSSSFL_ 0 0 0 ENST00000495568.7_1_16:88786791-88786842:-|nuORF ENST00000495568.7_1_16:88786791-88786842:-|nuORF ENST00000495568.7_1_16:88786791-88786842:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5346984863281 3 391.533768 1171.57948 1.282 0.00050195 0.97212 0.00038062 2.2541 0.00088257 391.53399863910164 52.709 0.28226 46.974 46.817 47.099 -5.7345 22 15 2 0 0 0 0.37677 1 33288 33288 13.519 0 1 25144000 33694 14356 22543 22959 39542 39542 0.0005491146903295885 LMLVFWKL 8 Unmodified _LMLVFWKL_ 0 0 0 REV__ENST00000262662.5_1_1:51440237-51440288:+|nuORF REV__ENST00000262662.5_1_1:51440237-51440288:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.8792114257812 3 350.545391 1048.61435 -0.59126 -0.00020726 1.2073 0.00042321 0.61603 0.00021595 350.5459552847864 16.653 0.050833 16.654 16.634 16.685 0.0010548 19 12 2 0 0 0 0.80975 1 8223 8223 0.45834 0 1 289750 + 33695 25029 22544 22960 39543 39543 0.09198243858304522 LMLWRAQGFI 10 Unmodified _LMLWRAQGFI_ 0 0 0 REV__ENST00000505241.1_1_5:176950198-176951252:-|nuORF REV__ENST00000505241.1_1_5:176950198-176951252:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.2315368652344 3 412.230355 1233.66923 NaN NaN NaN NaN NaN NaN NaN 77.148 1 70.972 70.472 71.472 -6.1757 0 0 0 0.94046 1 50455 50455 6.1918 1.663 1 + 33696 28066 22545 22961 39544 39544 0.06174630658915703 LMLYFRIRFYF 11 Unmodified _LMLYFRIRFYF_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.429931640625 2 784.925958 1567.83736 0.47152 0.00037011 1.4677 0.001152 1.9392 0.0015221 785.4281911852407 74.278 0.22834 74.322 74.205 74.433 0.043976 20 9 3 0 0 0 0.73992 1 40970 40970 1.4819 1.2129 1 1959800 33697 2315 22546 22962 39545 39545 0.07615692852709799 LMLYFRIRFYF 11 Unmodified _LMLYFRIRFYF_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.92578125 2 784.925958 1567.83736 0.28597 0.00022446 1.387 0.0010887 1.673 0.0013132 785.4287385614062 80.064 0.4474 80.122 79.722 80.17 0.057587 44 17 4 0 0 0 0.72981 1 44261 44261 3.5965 2.267 1 11814000 33698 2315 22546 22962 39546 39546 0.07615692852709799 LMLYVVDPDL 10 Unmodified _LMLYVVDPDL_ 0 0 0 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS AL20221201_MKP_PDAC_01 4 393.2127685546875 3 393.210626 1176.61005 NaN NaN NaN NaN NaN NaN NaN 95.761 1 89.586 89.086 90.086 -6.1757 0 0 0 0.78689 1 63433 63433 12.873 3.8964 1 + 33699 17623 22547 22963 39547 39547 0.02880689854055163 LMMFLMIRE 9 Unmodified _LMMFLMIRE_ 0 0 0 ENST00000443439.6_2_5:96126330-96127807:-|nuORF ENST00000443439.6_2_5:96126330-96127807:-|nuORF ENST00000443439.6_2_5:96126330-96127807:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3026733398438 2 592.305441 1182.59633 0.94397 0.00055912 -1.9946 -0.0011814 -1.0506 -0.00062228 592.3030086856131 71.227 0.42505 71.266 71.002 71.427 0.039024 53 18 4 0 0 0 0.32871 1 39171 39171 15.847 4.2069 1 2094600 33700 13424 22548 22964 39548 39548 0.012334175495880118 LMMMDEPF 8 Unmodified _LMMMDEPF_ 0 0 0 REV__nc|ENSG00000140287|P19113-2|HDC REV__nc|ENSG00000140287|P19113-2|HDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7536926269531 2 507.210675 1012.4068 0.56614 0.00028715 2.17 0.0011006 2.7361 0.0013878 507.21188012716044 66.461 0.48466 66.461 66.153 66.637 0 45 21 3 0 0 0 8.7369 1 37032 37032 10.183 4.423 1 2607800 + 33701 20458 22549 22965 39549 39549 -0.09891074463553196 LMMPLVDQ 8 Unmodified _LMMPLVDQ_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7409057617188 2 473.740457 945.46636 NaN NaN NaN NaN NaN NaN NaN 17.407 1 17.412 16.912 17.912 0.0050564 0 0 0 0.97444 1 8779 8779 0.79363 0 1 33702 3420 22550 22966 39550 39550 -0.008554354578677703 LMMSEFWRI 9 Unmodified _LMMSEFWRI_ 0 0 0 ENST00000475377.2_1_2:153482053-153483045:+|nuORF ENST00000475377.2_1_2:153482053-153483045:+|nuORF ENST00000475377.2_1_2:153482053-153483045:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7984619140625 2 606.798837 1211.58312 0.78642 0.0004772 0.092743 5.6276E-05 0.87917 0.00053348 606.7987192597908 71.509 1.9606 65.333 64.39 66.351 -6.1757 253 102 3 0 0 0 0.30562 1 46393 46393 16.942 0 1 140360000 33703 13960 22551 22967 39551 39551 -0.014206972381089145 LMNADSELLLE 11 Unmodified _LMNADSELLLE_ 0 0 0 ENST00000504270.2_1_12:6557201-6557267:-|nuORF;ENST00000535639.5_1_12:6556141-6557267:-|nuORF ENST00000504270.2_1_12:6557201-6557267:-|nuORF ENST00000504270.2_1_12:6557201-6557267:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.31494140625 2 624.313029 1246.6115 NaN NaN NaN NaN NaN NaN NaN 85.16 1 85.223 84.723 85.723 0.063171 0 0 0 0.11918 1 47141 47141 47.594 5.7548 1 33704 14490 22552 22968 39552 39552 -0.001937208478238972 LMNAVVQTV 9 Oxidation (M) _LM(Oxidation (M))NAVVQTV_ LM(1)NAVVQTV LM(42)NAVVQTV 0 0 1 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;ENSG00000183230|ENST00000433211|CTNNA3;ENST00000373735.1_1_10:67680090-67838726:-|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7682800292969 2 495.76806 989.521567 -0.40647 -0.00020151 0.42868 0.00021252 0.02221 1.1011E-05 495.768380345411 41.235 0.24328 41.235 41.082 41.325 0 21 11 2 0 0 0 0.06187 1 22196 22196 42.095 7.6928 1 2555800 33705 671 22553 22969 39553 39553 102 0.02638694334268621 LMNEIEFRLER 11 Unmodified _LMNEIEFRLER_ 0 0 0 nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.9226989746094 3 483.922138 1448.74458 0.60738 0.00029393 0.066288 3.2078E-05 0.67367 0.000326 483.92230811377146 28.253 0.34995 25.105 24.843 25.193 -3.1482 36 18 3 0 0 0 0.58219 1 15700 15700 6.6235 0 1 13423000 33706 5041 22554 22970 39554 39554 0.03816143328663202 LMNEIEFRLER 11 Unmodified _LMNEIEFRLER_ 0 0 0 nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.1933288574219 4 363.193422 1448.74458 1.2039 0.00043724 -0.077206 -2.8041E-05 1.1267 0.0004092 363.19346263239 28.187 0.29716 25.039 24.896 25.193 -3.1482 36 15 3 0 0 0 0.65846 1 15712 15712 4.1166 1.2733 1 14967000 33707 5041 22554 22970 39555 39555 0.03816143328663202 LMNGGQLT 8 Unmodified _LMNGGQLT_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2131958007812 2 417.212921 832.411288 NaN NaN NaN NaN NaN NaN NaN 41.186 1 40.883 40.383 41.383 -0.30304 0 0 0 0.88073 1 21803 21803 19.439 4.8573 1 + 33708 18194 22555 22971 39556 39556 -0.011621059341450746 LMNGPQNG 8 Unmodified _LMNGPQNG_ 0 0 0 REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF REV__ENST00000504745.1_1_4:113347516-113362363:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.7284545898438 2 415.694895 829.375237 NaN NaN NaN NaN NaN NaN NaN 25.135 1 22.252 21.752 22.752 -2.8831 0 0 0 0.90769 1 13736 13736 18.135 3.7296 1 + 33709 17535 22556 22972 39557 39557 -0.04627563110977917 LMNPSQKKKRK 11 Unmodified _LMNPSQKKKRK_ 0 0 0 nc|ENSG00000108799|Q92800-5|EZH1;nc|ENSG00000108799|Q92800-4|EZH1;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;ENST00000585550.5_1_17:40855746-40872302:-|nuORF nc|ENSG00000108799|Q92800-5|EZH1 nc|ENSG00000108799|Q92800-5|EZH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.4091796875 2 679.408463 1356.80237 NaN NaN NaN NaN NaN NaN NaN 101.27 1 101.23 100.73 101.73 -0.04216 0 0 0 0.93893 1 56259 56259 3.2813 0 1 33710 2607 22557 22973 39558 39558 0.13824450044739933 LMPFAYFFT 9 Unmodified _LMPFAYFFT_ 0 0 0 nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF nc|ENSG00000139636|Q6UX01-3|LMBR1L nc|ENSG00000139636|Q6UX01-3|LMBR1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7782592773438 2 568.777896 1135.54124 1.1623 0.00066107 -2.2847 -0.0012995 -1.1224 -0.00063841 568.7766008200925 100.56 0.15942 100.52 100.4 100.56 -0.04216 13 5 3 0 0 0 0.25297 1 55872 55872 19.439 6.9074 1 9510100 33711 5173 22558 22974 39559 39559 -0.021109296549866485 LMQEAGDECEP 11 Unmodified _LMQEAGDECEP_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.1656494140625 3 407.830256 1220.46894 0.17615 7.1839E-05 0.15913 6.49E-05 0.33528 0.00013674 407.83026037659164 65.514 0.31573 65.03 64.854 65.169 -0.48428 26 14 2 0 0 0 0.67922 1 35707 35707 2.8433 1.101 1 8811600 33712 4295 22559 22975 39560 39560 -0.1324767658154542 LMQEDGRTL 9 Unmodified _LMQEDGRTL_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;ENST00000476846.1_7:111503332-111846439:-|nuORF nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7653198242188 2 531.766049 1061.51754 0.48791 0.00025945 0.47777 0.00025406 0.96568 0.00051352 531.7664062742131 76.574 1.8414 70.398 69.521 71.362 -6.1757 154 101 2 0 0 0 0.23158 1 50569 50569 20.454 2.3073 1 24706000 33713 4066 22560 22976 39561 39561 -0.010753951594551836 LMQHLTASEAK 11 Unmodified _LMQHLTASEAK_ 0 0 0 ENST00000401028.2_1_1:91794325-91794628:+|nuORF ENST00000401028.2_1_1:91794325-91794628:+|nuORF ENST00000401028.2_1_1:91794325-91794628:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2167663574219 3 410.216662 1227.62816 1.1423 0.0004686 0.60026 0.00024624 1.7426 0.00071484 410.21688412140907 57.439 0.36111 51.411 51.258 51.619 -6.0275 35 18 2 0 0 0 0.61059 1 36686 36686 5.8681 0 1 24059000 33714 12880 22561 22977 39562 39562 0.02344824828765013 LMQMNGICYMG 11 Unmodified _LMQMNGICYMG_ 0 0 0 REV__ENSG00000124201|ENST00000396105|ZNFX1 REV__ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8469543457031 3 420.846307 1259.51709 -0.20624 -8.6797E-05 0.85987 0.00036187 0.65363 0.00027508 420.8468692228403 36.078 0.28152 36.103 35.949 36.23 0.024971 27 12 3 0 0 0 0.70701 1 19084 19084 1.4551 0 1 7000400 + 33715 19427 22562 22978 39563 39563 -0.10228597466834799 LMQQTLRTVAF 11 Unmodified _LMQQTLRTVAF_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.910400390625 3 436.57619 1306.70674 0.38436 0.0001678 0.89737 0.00039177 1.2817 0.00055957 436.9107931278732 56.6 0.66473 56.532 56.115 56.78 -0.068737 77 33 3 0 0 0 0.69155 1 30656 30656 5.0475 0.64137 1 10857000 33716 10006 22563 22979 39564 39564 0.06565677133880854 LMQQTLRTVAF 11 Unmodified _LMQQTLRTVAF_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.5765991210938 3 436.57619 1306.70674 0.92978 0.00040592 0.60152 0.00026261 1.5313 0.00066853 436.57648866054967 75.59 0.57082 69.414 69.009 69.58 -6.1757 42 30 2 0 0 0 0.66568 1 49272 49272 7.4771 0.37534 1 7567200 33717 10006 22563 22979 39565 39565 0.06565677133880854 LMQSDNFCSY 10 Unmodified _LMQSDNFCSY_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5403137207031 3 403.163458 1206.46855 0.26888 0.0001084 2.0497 0.00082638 2.3186 0.00093478 403.16542531841935 54.137 0.33496 53.671 53.487 53.822 -0.46664 39 16 5 0 0 0 0.23986 1 29278 29278 0.77653 0.50751 1 2561500 33718 6889 22564 22980 39566 39566 -0.12643051510713121 LMREPCITP 9 Unmodified _LMREPCITP_ 0 0 0 nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1 nc|ENSG00000103266|Q9UNE7-2|STUB1 nc|ENSG00000103266|Q9UNE7-2|STUB1 MSMS AL20221201_MKP_PDAC_01 4 530.2709350585938 2 530.269912 1058.52527 NaN NaN NaN NaN NaN NaN NaN 25.142 1 22.259 21.759 22.759 -2.8831 0 0 0 0.29524 1 13741 13741 25.399 7.253 1 33719 2122 22565 22981 39567 39567 -0.0016495916354415385 LMRFGKANRI 10 Unmodified _LMRFGKANRI_ 0 0 0 REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5702209472656 3 402.56937 1204.68628 0.84576 0.00034048 0.86405 0.00034784 1.7098 0.00068832 402.5697934418204 39.012 0.35605 34.561 34.348 34.704 -4.4509 27 22 2 0 0 0 0.52659 1 23069 23069 14.957 7.8554 1 5917900 + 33720 19943 22566 22982 39568 39568 0.09212551264727153 LMRGLKSKLF 10 Unmodified _LMRGLKSKLF_ 0 0 0 REV__ENST00000568840.1_1_15:75182430-75185220:+|nuORF REV__ENST00000568840.1_1_15:75182430-75185220:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2463989257812 3 398.246005 1191.71618 -0.22092 -8.798E-05 -0.38508 -0.00015336 -0.606 -0.00024134 398.2460044402012 55.461 0.25844 55.393 55.238 55.497 -0.068741 27 12 3 0 0 0 0.65023 1 30136 30136 8.4443 0.83535 1 10636000 + 33721 28953 22567 22983 39569 39569 0.12799490210045406 LMRHPSSL 8 Unmodified _LMRHPSSL_ 0 0 0 ENST00000340001.8_1_17:66985250-66987006:-|nuORF ENST00000340001.8_1_17:66985250-66987006:-|nuORF ENST00000340001.8_1_17:66985250-66987006:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7532958984375 2 470.755287 939.496021 -0.42296 -0.00019911 -0.43353 -0.00020409 -0.85649 -0.0004032 470.75529834011064 77.263 0.26746 76.78 76.58 76.848 -0.4826 19 11 2 0 0 0 0.67481 1 42251 42251 19.439 4.8573 1 2184000 33722 11957 22568 22984 39570 39570 0.023852646024920432 LMRHQRVHTIK 11 Unmodified _LMRHQRVHTIK_ 0 0 0 ENSG00000186812|ENST00000330501|ZNF397 ENSG00000186812|ENST00000330501|ZNF397 ENSG00000186812|ENST00000330501|ZNF397 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 709.9117431640625 2 709.911704 1417.80886 0.38354 0.00027228 -0.38451 -0.00027297 -0.0009673 -6.867E-07 709.9113757664238 89.125 0.39653 89.173 88.948 89.345 0.047852 47 14 4 0 0 0 0.61059 2 49510 49510;49614 10.8 1.8233 1 147070000 33723 9508 22569 22985 39571;39572 39571 0.11666387996137928 LMRRAMIWET 10 Unmodified _LMRRAMIWET_ 0 0 0 ENST00000471771.5_1_13:28014269-28014434:-|nuORF ENST00000471771.5_1_13:28014269-28014434:-|nuORF ENST00000471771.5_1_13:28014269-28014434:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.8428344726562 2 653.841568 1305.66858 0.10557 6.9028E-05 1.154 0.00075453 1.2596 0.00082356 653.8424521032595 53.49 0.17324 53.427 53.361 53.534 -0.063423 10 8 2 0 0 0 0.64628 1 29037 29037 8.7454 0 1 3026400 33724 13885 22570 22986 39573 39573 0.02797467947516452 LMRVCLWCFFF 11 Unmodified _LMRVCLWCFFF_ 0 0 0 REV__ENST00000298316.6_1_14:50361063-50361216:+|nuORF REV__ENST00000298316.6_1_14:50361063-50361216:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.9440002441406 4 366.930183 1463.69163 -0.012703 -4.6613E-06 0.049675 1.8227E-05 0.036972 1.3566E-05 366.9296664596699 15.858 0.11501 15.863 15.795 15.91 0.0050564 12 7 2 0 0 0 0.30605 1 7931 7931 0 0 1 201380 + 33725 25289 22571 22987 39574 39574 -0.021672292593621023 LMSAAGLPVCL 11 Unmodified _LMSAAGLPVCL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.28857421875 2 537.787938 1073.56132 1.0905 0.00058643 2.0118 0.0010819 3.1023 0.0016684 537.7890661306769 86.888 0.95874 80.712 79.829 80.788 -6.1757 84 51 2 0 0 0 0.27386 1 57132 57132 14.838 6.245 1 57177000 33726 2692 22572 22988 39575 39575 0.027484980133294812 LMSEEHTAVY 10 Unmodified _LMSEEHTAVY_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.5220642089844 3 393.849868 1178.52777 1.4168 0.000558 1.0182 0.00040103 2.435 0.00095903 393.85062880904036 34.123 0.35636 30.138 29.914 30.27 -3.9853 31 19 2 0 0 0 0.23227 1 19503 19503 3.5871 0 1 6003100 33727 7661 22573 22989 39576 39576 -0.054348322248642944 LMSERVFRI 9 Unmodified _LMSERVFRI_ 0 0 0 ENSG00000004939|ENST00000262418|SLC4A1;SLC4A1|p.G699Afs*11|1|0.16|ENSG00000004939|chr17:44253333-44253333|C/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1 ENSG00000004939|ENST00000262418|SLC4A1 ENSG00000004939|ENST00000262418|SLC4A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7655639648438 2 575.823701 1149.63285 0.91 0.000524 -2.2648 -0.0013042 -1.3548 -0.00078015 575.822628279385 52.386 0.33725 52.327 52.189 52.526 -0.058918 21 16 2 0 0 0 0.19496 1 28409 28409 13.906 1.3745 1 2489000 33728 291 22574 22990 39577 39577 0.06401753762202134 LMSLAFATMA 10 Unmodified _LMSLAFATMA_ 0 0 0 REV__ENST00000379053.4_1_20:5482206-5485036:-|nuORF REV__ENST00000379053.4_1_20:5482206-5485036:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7979736328125 2 528.266838 1054.51912 0.87564 0.00046257 -2.1239 -0.001122 -1.2482 -0.00065939 528.265260814593 99.225 0.21973 93.049 92.908 93.128 -6.1757 22 12 2 0 0 0 0.22811 1 66018 66018 14.838 2.3067 1 24502000 + 33729 26275 22575 22991 39578 39578 -0.005954773950634262 LMSLFYYMPEH 11 Unmodified _LMSLFYYMPEH_ 0 0 0 REV__ENSG00000187918|ENST00000641930|OR51I2 REV__ENSG00000187918|ENST00000641930|OR51I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.3281860351562 2 715.827792 1429.64103 0.85727 0.00061366 -0.50608 -0.00036227 0.35119 0.00025139 715.8272570605836 95.13 0.65068 88.955 88.545 89.195 -6.1757 61 36 2 0 0 0 0.35243 3 62866 62866;62995;63123 24.021 14.637 1 9387000 + 33730 23673 22576 22992 39579;39580;39581 39579 -0.05660480103347254 LMSLIINTF 9 Oxidation (M) _LM(Oxidation (M))SLIINTF_ LM(1)SLIINTF LM(68)SLIINTF 0 0 1 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000224411|Q14568|HSP90AA2P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2933349609375 2 534.293911 1066.57327 -0.1299 -6.9406E-05 -0.041661 -2.2259E-05 -0.17156 -9.1665E-05 534.293738130233 84.068 0.37924 84.132 83.951 84.33 0.063171 25 15 2 0 0 0 0.015445 2 46617 46507;46617 68.081 35.775 1 22709000 33731 1671;1308 22577 22993 39582;39583 39583 223 0.04264438028144468 LMSLIINTF 9 Unmodified _LMSLIINTF_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000224411|Q14568|HSP90AA2P;nc|ENSG00000205940|Q58FF8|HSP90AB2P;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2997436523438 2 526.296453 1050.57835 1.4444 0.00076018 0.34692 0.00018258 1.7913 0.00094276 526.296394248976 100.79 0.12897 94.612 94.541 94.67 -6.1757 31 8 5 0 0 0 0.010877 1 67467 67467 77.984 20.513 1 248040000 33732 1671;1308 22577 22994 39584 39584 0.055087418907760366 LMSQQVAKQL 10 Unmodified _LMSQQVAKQL_ 0 0 0 REV__ENSG00000213977|ENST00000225525|TAX1BP3 REV__ENSG00000213977|ENST00000225525|TAX1BP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3223266601562 2 573.320991 1144.62743 0.10923 6.2624E-05 1.8227 0.001045 1.9319 0.0011076 573.3221989358477 72.346 0.24931 72.388 72.278 72.527 0.041725 20 11 2 0 0 0 0.65023 1 39843 39843 9.3831 1.2276 1 3171800 + 33733 24300 22578 22995 39585 39585 0.0609003017973464 LMSQTCLWMIS 11 Unmodified _LMSQTCLWMIS_ 0 0 0 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 REV__nc|ENSG00000197891|Q96S37-2|SLC22A12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.8096313476562 2 656.808545 1311.60254 0.85881 0.00056407 0.091231 5.9921E-05 0.95004 0.00062399 656.8084208955613 99.395 0.16673 93.22 93.174 93.341 -6.1757 13 10 2 0 0 0 0.42108 1 66190 66190 20.415 0 1 25390000 + 33734 23964 22579 22996 39586 39586 -0.040801090095101245 LMSRFIDRHNK 11 Unmodified _LMSRFIDRHNK_ 0 0 0 REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 709.3804321289062 2 708.88007 1415.74559 0.94086 0.00066696 -0.031182 -2.2105E-05 0.90968 0.00064485 708.8799714202122 96.073 0.824 89.898 89.446 90.27 -6.1757 125 50 3 0 0 0 0.46131 1 63546 63546 18.373 2.5259 1 33683000 + 33735 19628 22580 22997 39587 39587 0.054344024882311714 LMSTLLLATM 10 Unmodified _LMSTLLLATM_ 0 0 0 ENST00000448223.6_1_2:17919563-17922932:-|nuORF ENST00000448223.6_1_2:17919563-17922932:-|nuORF ENST00000448223.6_1_2:17919563-17922932:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7467041015625 2 547.303421 1092.59229 2.0166 0.0011037 -2.8058 -0.0015356 -0.78918 -0.00043192 547.3018836830506 94.548 0.31293 94.562 94.382 94.695 0.014252 17 11 2 0 0 0 0.22811 1 52517 52517 14.838 4.0143 1 1468900 33736 13489 22581 22998 39588 39588 0.04969651327542124 LMSTLLLATM 10 Unmodified _LMSTLLLATM_ 0 0 0 ENST00000448223.6_1_2:17919563-17922932:-|nuORF ENST00000448223.6_1_2:17919563-17922932:-|nuORF ENST00000448223.6_1_2:17919563-17922932:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 547.303421 1092.59229 1.5925 0.00087159 -5.8589 -0.0032066 -4.2664 -0.002335 547.3000911630902 100.86 0.14425 94.689 94.635 94.78 -6.1757 0.063397 -0.002211 NaN 14.838 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 16780000 33737 13489 22581 22998 0.04969651327542124 LMSYQKPPL 9 Unmodified _LMSYQKPPL_ 0 0 0 REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54 REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7590942382812 2 538.794078 1075.5736 0.70051 0.00037743 3.8101 0.0020529 4.5106 0.0024303 538.7952980713048 101.52 0.18758 95.344 95.274 95.461 -6.1757 19 9 3 0 0 0 0.28047 1 68080 68080 18.135 3.5533 1 12860000 + 33738 20684 22582 22999 39589 39589 0.03883857747996444 LMTHNYYELLY 11 Unmodified _LMTHNYYELLY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2346801757812 3 487.235722 1458.68534 0.16919 8.2435E-05 -2.294 -0.0011177 -2.1248 -0.0010353 487.5686251941254 31.193 0.14393 31.193 31.132 31.276 0 12 6 2 0 0 0 0.70701 1 16260 16260 1.4551 0.94916 1 1454800 33739 583 22583 23000 39590 39590 -0.025657526854956814 LMTHNYYELLY 11 Unmodified _LMTHNYYELLY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 487.235722 1458.68534 0.32485 0.00015828 -0.49958 -0.00024341 -0.17473 -8.5134E-05 487.2358786847472 31.504 0.14935 31.401 31.309 31.459 -0.10269 0.10415 0.0018265 NaN 1.4551 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1335700 33740 583 22583 23000 -0.025657526854956814 LMTKLQWLF 9 Unmodified _LMTKLQWLF_ 0 0 0 nc|ENSG00000118369|Q9P2H5-2|USP35;ENSG00000118369|ENST00000529308|USP35 nc|ENSG00000118369|Q9P2H5-2|USP35 nc|ENSG00000118369|Q9P2H5-2|USP35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3336791992188 2 590.33337 1178.65219 NaN NaN NaN NaN NaN NaN NaN 96.212 1 96.205 95.705 96.705 -0.007019 0 0 0 0.65645 1 53440 53440 10.824 2.0785 1 33741 3367 22584 23001 39591 39591 0.07000710053102921 LMTRCWSK 8 Unmodified _LMTRCWSK_ 0 0 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7;ENST00000369320.1_1_6:91261764-91261884:-|nuORF nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7587280273438 2 512.756972 1023.49939 NaN NaN NaN NaN NaN NaN NaN 62.526 1 62.038 61.538 62.538 -0.48764 0 0 0 0.93587 1 34072 34072 13.508 0 1 33742 4694 22585 23002 39592 39592 -0.011418086151593343 LMTRREYVI 9 Unmodified _LMTRREYVI_ 0 0 0 REV__nc|ENSG00000105971|P51636-3|CAV2 REV__nc|ENSG00000105971|P51636-3|CAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2249145507812 3 394.221748 1179.64341 1.148 0.00045255 2.2753 0.00089698 3.4233 0.0013495 394.2229132972979 19.229 0.1881 16.573 16.436 16.624 -2.6564 19 12 2 0 0 0 0.43515 1 10119 10119 10.8 1.8233 1 4838700 + 33743 29551 22586 23003 39593 39593 0.06077736416636981 LMTTGHALAL 10 Unmodified _LMTTGHALAL_ 0 0 0 REV__ENST00000428857.1_1_2:135635177-135676243:-|nuORF REV__ENST00000428857.1_1_2:135635177-135676243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2831420898438 2 514.283877 1026.5532 0.22471 0.00011556 -2.6645 -0.0013703 -2.4398 -0.0012548 514.2825602271757 79.717 0.36639 79.717 79.475 79.841 0 22 15 2 0 0 0 0.62068 1 44333 44333 10.074 2.1638 1 349740 + 33744 26744 22587 23004 39594 39594 0.040986870881852155 LMVAWIRAN 9 Unmodified _LMVAWIRAN_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3045043945312 2 537.299862 1072.58517 0.9312 0.00050033 0.80182 0.00043082 1.733 0.00093115 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.30562 1 51747 51747 16.942 0 1 243440000 33745 9669 22588 23005 39595 39595 0.05178099561999261 LMVCMEETEK 10 Unmodified _LMVCMEETEK_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.84912109375 3 404.848482 1211.52362 0.31467 0.00012739 1.8195 0.00073663 2.1342 0.00086402 405.1833335958706 23.743 0.12682 20.915 20.881 21.008 -2.8273 11 7 2 0 0 0 0.69377 1 12879 12879 1.7423 0 1 5709500 + 33746 17566 22589 23006 39596 39596 -0.07368381034484628 LMVDHVTEV 9 Unmodified _LMVDHVTEV_ 0 0 0 ENSG00000213523|ENST00000336283|SRA1;ENST00000602875.5_1_5:139930287-139937028:-|nuORF ENSG00000213523|ENST00000336283|SRA1 ENSG00000213523|ENST00000336283|SRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7655639648438 2 521.765517 1041.51648 0.94645 0.00049383 -0.49015 -0.00025574 0.4563 0.00023808 521.7652867061713 49.987 0.28264 44.448 44.282 44.565 -5.5391 29 17 2 0 0 0 0.0095811 1 31276 31276 81.613 51.388 1 13745000 33747 10441 22590 23007 39597 39597 -0.00261609528365625 LMVERYNRNGN 11 Unmodified _LMVERYNRNGN_ 0 0 0 REV__ENST00000537091.2_1_17:17772601-17875627:-|nuORF REV__ENST00000537091.2_1_17:17772601-17875627:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3370971679688 2 683.338235 1364.66192 -0.11735 -8.0192E-05 -4.0443 -0.0027636 -4.1616 -0.0028438 683.8359388705693 43.415 0.30316 43.415 43.183 43.486 0 33 14 3 0 0 0 0.30985 1 23559 23559 26.268 2.2476 1 2765600 + 33748 22885 22591 23008 39598 39598 -0.005827536794640764 LMVHAFSRI 9 Unmodified _LMVHAFSRI_ 0 0 0 ENST00000434410.5_2_3:50621362-50621554:+|nuORF ENST00000434410.5_2_3:50621362-50621554:+|nuORF ENST00000434410.5_2_3:50621362-50621554:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3065185546875 2 537.299862 1072.58517 0.9312 0.00050033 0.80182 0.00043082 1.733 0.00093115 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.14 2 51340 51340;51617 29.082 0.59474 1 243440000 33749 13299 22592 23009 39599;39600 39599 0.05178099561999261 LMVHFPTF 8 Unmodified _LMVHFPTF_ 0 0 0 REV__ENSG00000140030|ENST00000267549|GPR65 REV__ENSG00000140030|ENST00000267549|GPR65 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.2769775390625 2 496.257131 990.499709 0.96092 0.00047686 -2.2567 -0.0011199 -1.2957 -0.00064302 496.2551138195716 70.33 0.1949 64.154 63.973 64.168 -6.1757 14 10 2 0 0 0 8.7369 1 45840 45840 17.087 0 1 18812000 + 33750 20448 22593 23010 39601 39601 0.004079343763578436 LMVHRRDISM 10 Unmodified _LMVHRRDISM_ 0 0 0 REV__ENSG00000148606|ENST00000372371|POLR3A REV__ENSG00000148606|ENST00000372371|POLR3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.874755859375 3 419.890004 1256.64818 NaN NaN NaN NaN NaN NaN NaN 43.554 1 43.539 43.039 44.039 -0.015667 0 0 0 0.8671 1 23345 23345 8.4443 1.4072 1 + 33751 20960 22594 23011 39602 39602 0.03012297287750698 LMVLCPGI 8 Unmodified _LMVLCPGI_ 0 0 0 ENSG00000142484|ENST00000270560|TM4SF5 ENSG00000142484|ENST00000270560|TM4SF5 ENSG00000142484|ENST00000270560|TM4SF5 MSMS AL20221201_MKP_PDAC_01 4 423.2359008789062 2 423.23481 844.455067 NaN NaN NaN NaN NaN NaN NaN 89.544 1 83.369 82.869 83.869 -6.1757 0 0 0 0.94749 1 59113 59113 11.114 0.93107 1 33752 5416 22595 23012 39603 39603 0.026617872386623276 LMVMRRLL 8 Unmodified _LMVMRRLL_ 0 0 0 ENST00000430945.5_1_9:94907296-94910408:+|nuORF ENST00000430945.5_1_9:94907296-94910408:+|nuORF ENST00000430945.5_1_9:94907296-94910408:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.314453125 2 516.314457 1030.61436 0.81616 0.00042139 -0.57756 -0.0002982 0.2386 0.00012319 516.3140698874809 99.174 0.33302 92.998 92.841 93.174 -6.1757 57 19 4 0 0 0 0.80624 1 66065 66065 2.8892 0 1 346290000 33753 13251 22596 23013 39604 39604 0.10027920586639993 LMVQDWVPL 9 Unmodified _LMVQDWVPL_ 0 0 0 ENST00000532763.5_1_6:130536401-130536769:-|nuORF ENST00000532763.5_1_6:130536401-130536769:-|nuORF ENST00000532763.5_1_6:130536401-130536769:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.1929931640625 3 367.531811 1099.5736 1.777 0.00065309 1.7607 0.0006471 3.5376 0.0013002 367.86626863537316 20.686 0.55225 17.993 17.582 18.134 -2.693 43 33 2 0 0 0 0.18521 1 11072 11072 11.495 2.7493 1 1986900 33754 14929 22597 23014 39605 39605 0.027798577480098174 LMVWHRGR 8 Unmodified _LMVWHRGR_ 0 0 0 ENST00000477553.1_1_9:124091151-124091454:+|nuORF ENST00000477553.1_1_9:124091151-124091454:+|nuORF ENST00000477553.1_1_9:124091151-124091454:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1054.739135742188 1 1054.57271 1053.56544 0.37917 0.00039987 -0.23362 -0.00024637 0.14555 0.0001535 1054.5752270652897 40.404 0.12569 40.107 40.008 40.133 -0.29716 8 5 2 0 0 0 8.7369 1 21340 21340 0.79363 0 1 1457600 33755 13998 22598 23015 39606 39606 0.04079768341898671 LMWLTPLPRT 10 Unmodified _LMWLTPLPRT_ 0 0 0 REV__ENST00000397011.2_1_7:2400416-2402329:+|nuORF REV__ENST00000397011.2_1_7:2400416-2402329:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2374877929688 3 409.902126 1226.68455 0.83887 0.00034385 0.92229 0.00037805 1.7612 0.0007219 410.23677255528486 77.522 0.78117 71.347 70.973 71.754 -6.1757 103 45 3 0 0 0 0.60478 1 50862 50862 10.899 3.0529 1 37559000 + 33756 26521 22599 23016 39607 39607 0.08027497456100718 LMWNHLARAK 10 Unmodified _LMWNHLARAK_ 0 0 0 ENST00000491885.6_1_6:111982944-111997736:-|nuORF ENST00000491885.6_1_6:111982944-111997736:-|nuORF ENST00000491885.6_1_6:111982944-111997736:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8977355957031 3 413.897487 1238.67063 -0.20407 -8.4462E-05 0.10645 4.4061E-05 -0.097612 -4.0401E-05 414.23172747167604 53.451 0.41896 53.388 53.044 53.463 -0.063423 33 20 2 0 0 0 0.69064 1 28931 28931 1.9064 0 1 3726300 33757 14287 22600 23017 39608 39608 0.06084264747664747 LMWTMLFL 8 Unmodified _LMWTMLFL_ 0 0 0 nc|ENSG00000167780|O75908-3|SOAT2;nc|ENSG00000167780|O75908-2|SOAT2;ENSG00000167780|ENST00000301466|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 nc|ENSG00000167780|O75908-3|SOAT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3013305664062 2 527.776842 1053.53913 -0.041031 -2.1655E-05 0.61125 0.00032261 0.57022 0.00030095 528.2788279834965 78.736 0.18391 78.25 78.139 78.323 -0.48596 14 6 3 0 0 0 8.7369 1 43103 43103 10.183 0 1 573340 33758 7670 22601 23018 39609 39609 0.01450318335537304 LMYDLLLW 8 Unmodified _LMYDLLLW_ 0 0 0 REV__ENST00000417037.6_2_3:38183152-38183278:+|nuORF REV__ENST00000417037.6_2_3:38183152-38183278:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1066.405395507812 1 1066.56417 1065.55689 0.45394 0.00048416 3.1224 0.0033303 3.5764 0.0038144 1066.5698764969566 46.569 0.10063 46.232 46.169 46.27 -0.33664 6 4 2 0 0 0 8.7369 1 24930 24930 2.8892 0 1 3205300 + 33759 26786 22602 23019 39610 39610 0.02673356862055698 LMYFRIDL 8 Unmodified _LMYFRIDL_ 0 0 0 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7879028320312 2 535.788795 1069.56304 0.27418 0.00014691 -1.0263 -0.00054987 -0.75209 -0.00040296 535.7879160647287 78.312 0.47958 78.312 78.03 78.509 0 41 21 3 0 0 0 0.80044 1 43496 43496 6.3541 0.62225 1 1167300 + 33760 23568 22603 23020 39611 39611 0.031038750935977077 LMYFRIDL 8 Unmodified _LMYFRIDL_ 0 0 0 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 REV__nc|ENSG00000186334|Q495N2-2|SLC36A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.786865234375 2 535.788795 1069.56304 -0.032696 -1.7518E-05 -1.4514 -0.00077765 -1.4841 -0.00079517 535.7876300733051 78.711 0.75334 78.225 77.888 78.641 -0.48596 119 32 5 0 0 0 0.65867 4 42981 42981;43087;43185;43289 20.871 2.7362 1 60173000 + 33761 23568 22603 23020 39612;39613;39614;39615 39612 0.031038750935977077 LMYNWFTSSV 10 Unmodified _LMYNWFTSSV_ 0 0 0 nc|ENSG00000112499|O15244-2|SLC22A2;ENSG00000112499|ENST00000366953|SLC22A2;ENST00000486916.5_1_6:160592405-160666544:-|nuORF nc|ENSG00000112499|O15244-2|SLC22A2 nc|ENSG00000112499|O15244-2|SLC22A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.29248046875 2 624.291899 1246.56925 NaN NaN NaN NaN NaN NaN NaN 63.057 1 62.571 62.071 63.071 -0.48617 0 0 0 0.92825 1 34383 34383 6.7232 0 1 33762 2895 22604 23021 39616 39616 -0.04417651465541894 LMYWEQML 8 Unmodified _LMYWEQML_ 0 0 0 ENSG00000111981|ENST00000229708|ULBP1 ENSG00000111981|ENST00000229708|ULBP1 ENSG00000111981|ENST00000229708|ULBP1 MSMS AL20221201_MKP_PDAC_01 4 557.2595825195312 2 557.259013 1112.50347 NaN NaN NaN NaN NaN NaN NaN 41.508 1 36.9 36.4 37.4 -4.6079 0 0 0 0.94749 1 24936 24936 11.114 0 1 33763 2848 22605 23022 39617 39617 -0.048277639121124594 LNAHEDQQLC 10 Unmodified _LNAHEDQQLC_ 0 0 0 REV__ENSG00000023516|ENST00000025301|AKAP11 REV__ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2643432617188 2 585.764037 1169.51352 0.27218 0.00015943 -0.68124 -0.00039905 -0.40907 -0.00023962 585.7638643910184 67.612 0.47068 67.612 67.317 67.788 0 67 21 5 0 0 0 0.66569 1 37596 37596 6.7232 0 1 20694000 + 33764 17120 22606 23023 39618 39618 -0.06445484653158928 LNAHEHFVT 9 Unmodified _LNAHEHFVT_ 0 0 0 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2673950195312 2 534.267073 1066.51959 -0.26333 -0.00014069 0.26903 0.00014373 0.0056925 3.0413E-06 534.2671698000399 19.334 0.20187 19.334 19.232 19.434 0 21 12 2 0 0 0 0.51218 1 9655 9655 6.7232 0 1 2502800 33765 356 22607 23024 39619 39619 -0.01100598359334981 LNAHEHFVT 9 Unmodified _LNAHEHFVT_ 0 0 0 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.267073 1066.51959 -0.26333 -0.00014069 0.26903 0.00014373 0.0056925 3.0413E-06 534.2671698000399 19.334 0.20187 19.334 19.232 19.434 0 0.038633 -0.0001885 NaN 6.7232 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2502800 33766 356 22607 23024 -0.01100598359334981 LNAHEHFVT 9 Unmodified _LNAHEHFVT_ 0 0 0 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 ENSG00000007168|ENST00000397195|PAFAH1B1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.267073 1066.51959 -0.56948 -0.00030425 0.72669 0.00038825 0.15722 8.3996E-05 534.2677144293258 19.234 0.14521 19.257 19.184 19.33 0.023106 -0.038633 0.00030053 NaN 6.7232 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 889400 33767 356 22607 23024 -0.01100598359334981 LNAIKRVGYW 10 Unmodified _LNAIKRVGYW_ 0 0 0 ENSG00000205221|ENST00000379242|VIT;nc|ENSG00000205221|Q6UXI7-2|VIT;nc|ENSG00000205221|Q6UXI7-5|VIT;nc|ENSG00000205221|Q6UXI7|VIT ENSG00000205221|ENST00000379242|VIT ENSG00000205221|ENST00000379242|VIT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.7748413085938 2 610.35094 1218.68733 0.76599 0.00046752 0.66658 0.00040684 1.4326 0.00087437 610.3517073756901 99.168 0.090584 92.993 92.957 93.048 -6.1757 7 4 2 0 0 0 0.23227 1 66002 66002 10.824 2.2306 1 17130000 33768 10354 22608 23025 39620 39620 0.0867308890528875 LNAPAPPF 8 Unmodified _LNAPAPPF_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MSMS AL20221201_MKP_PDAC_01 4 413.7267761230469 2 413.726521 825.438489 NaN NaN NaN NaN NaN NaN NaN 75.226 1 69.05 68.55 69.55 -6.1757 0 0 0 0.95607 1 49195 49195 9.3474 0 1 + 33769 19336 22609 23026 39621 39621 0.01878745668557258 LNAQAEPLDIK 11 Unmodified _LNAQAEPLDIK_ 0 0 0 REV__nc|ENSG00000101181|Q9H4K7-2|MTG2 REV__nc|ENSG00000101181|Q9H4K7-2|MTG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3361206054688 2 606.335153 1210.65575 0.74398 0.0004511 -0.71047 -0.00043078 0.03351 2.0318E-05 606.3341772737314 58.199 0.27795 58.138 58.016 58.294 -0.060722 33 13 3 0 0 0 0.33094 1 31709 31709 30.703 6.6829 1 8162800 + 33770 18140 22610 23027 39622 39622 0.058850513606330423 LNAVKSDVYN 10 Unmodified _LNAVKSDVYN_ 0 0 0 REV__ENSG00000127951|ENST00000248598|FGL2 REV__ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8646850585938 3 374.864506 1121.57169 1.5455 0.00057934 -0.88263 -0.00033087 0.66283 0.00024847 374.8641505732692 21.874 0.47351 19.139 18.9 19.374 -2.7348 73 26 4 0 0 0 0.57893 2 11797 11677;11797 10.899 3.89 1 21660000 + 33771 19595 22611 23028 39623;39624 39624 0.0157652026375672 LNCLVYNLNF 10 Unmodified _LNCLVYNLNF_ 0 0 0 REV__ENSG00000128519|ENST00000249284|TAS2R16 REV__ENSG00000128519|ENST00000249284|TAS2R16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8073120117188 2 606.807716 1211.60088 0.41064 0.00024918 -2.4062 -0.0014601 -1.9956 -0.0012109 607.3077544388259 92.327 0.29386 91.846 91.697 91.991 -0.48093 22 12 3 0 0 0 0.69064 1 50480 50480 3.9444 0.3479 1 592540 + 33772 19613 22612 23029 39625 39625 0.0035434128838005563 LNEELEYF 8 Unmodified _LNEELEYF_ 0 0 0 ENST00000317357.9_1_6:107979792-107980005:+|nuORF ENST00000317357.9_1_6:107979792-107980005:+|nuORF ENST00000317357.9_1_6:107979792-107980005:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.748779296875 2 528.747847 1055.48114 0.54303 0.00028713 -0.43093 -0.00022785 0.1121 5.9273E-05 528.7477578449503 72.647 0.30813 72.647 72.511 72.819 0 23 14 2 0 0 0 0.58902 1 40466 40466 26.884 3.7352 1 819610 33773 11747 22613 23030 39626 39626 -0.04437948784516266 LNEHNPPEI 9 Unmodified _LNEHNPPEI_ 0 0 0 ENSG00000150722|ENST00000682840|PPP1R1C;nc|ENSG00000150722|Q8WVI7-2|PPP1R1C ENSG00000150722|ENST00000682840|PPP1R1C ENSG00000150722|ENST00000682840|PPP1R1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7650146484375 2 531.764363 1061.51417 1.0729 0.00057052 -0.96057 -0.00051079 0.11232 5.973E-05 531.7639099607469 35.73 0.35779 31.537 31.351 31.709 -4.1928 38 22 2 0 0 0 0.047788 1 20705 20705 45.7 12.914 1 11651000 33774 6070 22614 23031 39627 39627 -0.01412321941825212 LNEKRCELF 9 Carbamidomethyl (C) _LNEKRC(Carbamidomethyl (C))ELF_ LNEKRC(1)ELF LNEKRC(42)ELF 0 1 0 REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.810302734375 2 604.808248 1207.60194 2.1618 0.0013075 -0.60515 -0.000366 1.5566 0.00094146 604.8078534933451 95.737 0.68346 95.742 95.265 95.949 0.004158 77 25 5 0 0 0 0.06294 1 53106 53106 41.84 16.44 1 32334000 + 33775 18651 22615 23032 39628 39628 1035 0.006445556572771238 LNEKRCELF 9 Carbamidomethyl (C) _LNEKRC(Carbamidomethyl (C))ELF_ LNEKRC(1)ELF LNEKRC(42)ELF 0 1 0 REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF REV__ENST00000504002.1_1_4:70715089-70723308:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8084716796875 2 604.808248 1207.60194 0.60257 0.00036444 -0.46553 -0.00028155 0.13704 8.2886E-05 604.8086108459324 92.228 0.99584 86.052 85.351 86.346 -6.1757 94 58 2 0 0 0 0.06294 1 61155 61155 41.84 14.956 1 54896000 + 33776 18651 22615 23032 39629 39629 1035 0.006445556572771238 LNEMLCPI 8 Unmodified _LNEMLCPI_ 0 0 0 nc|ENSG00000184459|Q8NFQ6-2|BPIFC;ENSG00000184459|ENST00000300399|BPIFC nc|ENSG00000184459|Q8NFQ6-2|BPIFC nc|ENSG00000184459|Q8NFQ6-2|BPIFC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7330627441406 2 466.732632 931.45071 NaN NaN NaN NaN NaN NaN NaN 19.551 1 19.551 19.051 20.051 0 0 0 0 0.97444 1 9784 9784 0.79363 0 1 33777 9260 22616 23033 39630 39630 -0.017757219749114483 LNENQVRT 8 Unmodified _LNENQVRT_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2567443847656 2 487.256705 972.498858 0.26069 0.00012702 0.48384 0.00023575 0.74453 0.00036278 487.2569463933749 16.554 0.54787 16.559 16.357 16.905 0.0050564 82 35 4 0 0 0 0.19493 2 8329 8329;8431 71.922 6.6873 1 19688000 33778 2224 22617 23034 39631;39632 39631 0.011508112609931231 LNENQVRT 8 Unmodified _LNENQVRT_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2575988769531 2 487.256705 972.498858 0.26816 0.00013066 -0.1771 -8.6294E-05 0.091058 4.4369E-05 487.25682659426843 17.041 0.32019 17.046 16.905 17.225 0.0050564 45 30 2 0 0 0 0.78809 2 8640 8536;8640 9.3831 1.0538 1 510460 33779 2224 22617 23034 39633;39634 39634 0.011508112609931231 LNEQMVAGTF 10 Unmodified _LNEQMVAGTF_ 0 0 0 REV__nc|ENSG00000139350|Q8NHV4-3|NEDD1 REV__nc|ENSG00000139350|Q8NHV4-3|NEDD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2683715820312 2 555.268424 1108.5223 0.68777 0.0003819 -1.5821 -0.00087851 -0.89436 -0.00049661 555.2674284046072 67.426 0.36097 66.944 66.758 67.119 -0.48218 45 15 4 0 0 0 0.35903 1 36803 36803 24.021 6.9077 1 5096000 + 33780 29662 22618 23035 39635 39635 -0.027625110166809463 LNERFTNM 8 Unmodified _LNERFTNM_ 0 0 0 nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP nc|ENSG00000160679|Q9Y3Y2-4|CHTOP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2470703125 2 512.747659 1023.48076 0.94486 0.00048448 -3.4136 -0.0017503 -2.4687 -0.0012658 513.2483362895215 50.572 0.42425 45.033 44.839 45.264 -5.5391 36 26 2 0 0 0 8.7369 1 31904 31904 10.074 4.3135 1 63235000 33781 6740 22619 23036 39636 39636 -0.03003646985348496 LNETRVCV 8 Unmodified _LNETRVCV_ 0 0 0 REV__ENSG00000133101|ENST00000255465|CCNA1 REV__ENSG00000133101|ENST00000255465|CCNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.242431640625 2 467.244752 932.474951 NaN NaN NaN NaN NaN NaN NaN 32.201 1 32.201 31.701 32.701 0 0 0 0 0.57076 1 16804 16804 36.044 0 1 + 33782 19905 22620 23037 39637 39637 0.006012545029648209 LNFEYILLE 9 Unmodified _LNFEYILLE_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7894897460938 2 577.310615 1152.60668 0.45369 0.00026192 1.1464 0.00066183 1.6001 0.00092375 577.3106606430933 97.345 0.26505 97.103 96.929 97.194 -0.24277 15 11 2 0 0 0 0.17275 1 53200 53200 21.747 3.6117 1 1497000 + 33783 18338 22621 23038 39638 39638 0.03647763071717236 LNFEYILLE 9 Unmodified _LNFEYILLE_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7896118164062 2 577.310615 1152.60668 2.8152 0.0016252 -1.6372 -0.00094517 1.178 0.00068006 577.3081078106349 96.921 0.10355 96.914 96.826 96.929 -0.007019 5 3 2 0 0 0 0.1176 1 53810 53810 36.127 10.728 1 1298400 + 33784 18338 22621 23038 39639 39639 0.03647763071717236 LNFKETLATF 10 Unmodified _LNFKETLATF_ 0 0 0 REV__nc|ENSG00000113578|P05230-2|FGF1 REV__nc|ENSG00000113578|P05230-2|FGF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3208618164062 2 592.321514 1182.62847 0.53543 0.00031715 0.36896 0.00021854 0.90439 0.00053569 592.3215062378622 84.724 0.27532 84.224 84.136 84.411 -0.49961 16 11 2 0 0 0 0.69377 1 46392 46392 3.5965 0 1 478970 + 33785 18875 22622 23039 39640 39640 0.04446567820286873 LNFKYLGFIF 10 Unmodified _LNFKYLGFIF_ 0 0 0 ENST00000361483.4_1_12:111798605-111799217:-|nuORF ENST00000361483.4_1_12:111798605-111799217:-|nuORF ENST00000361483.4_1_12:111798605-111799217:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.23828125 3 421.237504 1260.69068 0.94523 0.00039817 0.99726 0.00042008 1.9425 0.00081825 421.23784307967696 49.708 0.73692 49.659 49.29 50.027 -0.048824 85 36 3 0 0 0 0.69064 1 26989 26989 1.9064 0 1 2299700 33786 12187 22623 23040 39641 39641 0.07076338959268469 LNGGELQRS 9 Unmodified _LNGGELQRS_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2564697265625 2 487.256705 972.498858 -0.44273 -0.00021572 -0.044655 -2.1758E-05 -0.48738 -0.00023748 487.2566797406737 16.493 0.77004 16.493 16.127 16.897 0 564 202 4 0 0 0 0.010611 1 8047 8047 78.728 9.6231 1 36998000 + 33787 22827 22624 23041 39642 39642 0.011508112610044918 LNGGELQRS 9 Unmodified _LNGGELQRS_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.25732421875 2 487.256705 972.498858 0.26069 0.00012702 0.48384 0.00023575 0.74453 0.00036278 487.2569463933749 16.554 0.54787 16.559 16.357 16.905 0.0050564 82 35 4 0 0 0 0.044011 1 8230 8230 47.749 0 1 19688000 + 33788 22827 22624 23041 39643 39643 0.011508112610044918 LNGHAEALNI 10 Unmodified _LNGHAEALNI_ 0 0 0 REV__ENSG00000214711|ENST00000403897|CAPN14 REV__ENSG00000214711|ENST00000403897|CAPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2794799804688 2 526.28018 1050.54581 0.71227 0.00037486 -0.24226 -0.0001275 0.47001 0.00024736 526.2802449103422 38.487 0.32979 38.487 38.352 38.682 0 64 19 4 0 0 0 0.012821 1 20500 20500 82.529 9.5614 1 42917000 + 33789 24321 22625 23042 39644 39644 0.022556708121328484 LNGRGIFGL 9 Unmodified _LNGRGIFGL_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7771301269531 2 473.777077 945.5396 0.58116 0.00027534 0.76528 0.00036257 1.3464 0.00063791 473.7774706779554 43.861 0.27012 39.096 38.95 39.22 -4.7648 23 16 2 0 0 0 0.2143 1 26698 26698 21.747 0 1 6436800 + 33790 20707 22626 23043 39645 39645 0.06465197371289833 LNGSILSARTF 11 Unmodified _LNGSILSARTF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MSMS AL20221201_MKP_PDAC_01 4 589.832275390625 2 589.830037 1177.64552 NaN NaN NaN NaN NaN NaN NaN 92.396 1 86.221 85.721 86.721 -6.1757 0 0 0 0.18502 1 61102 61102 40.239 3.733 1 33791 16497 22627 23044 39646 39646 0.0638048842608896 LNGWYNATYF 10 Unmodified _LNGWYNATYF_ 0 0 0 ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216;ENST00000541473.1_1_11:61160710-61161501:+|nuORF;ENST00000544795.5_1_11:61160710-61165288:+|nuORF ENSG00000187049|ENST00000515837|TMEM216 ENSG00000187049|ENST00000515837|TMEM216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8608703613281 3 416.860984 1247.56112 -0.6804 -0.00028363 -0.40838 -0.00017024 -1.0888 -0.00045387 416.86081371684935 15.99 0.24192 15.99 15.819 16.061 0 116 56 3 0 0 0 0.71123 1 7676 7676 0.69767 0.07084 1 1549300 33792 9531 22628 23045 39647 39647 -0.05275462390682151 LNHGQQTIPN 10 Unmodified _LNHGQQTIPN_ 0 0 0 ENST00000570036.5_1_16:84513521-84531159:-|nuORF;ENSG00000140950|ENST00000343629|MEAK7 ENST00000570036.5_1_16:84513521-84531159:-|nuORF ENST00000570036.5_1_16:84513521-84531159:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.8280029296875 2 561.288537 1120.56252 1.093 0.00061348 -0.5203 -0.00029204 0.57268 0.00032144 561.7895260622557 42.38 0.30406 37.695 37.613 37.917 -4.6846 39 20 3 0 0 0 0.22489 1 25579 25579 18.146 2.2992 1 21940000 33793 5286 22629 23046 39648 39648 0.007061716981070276 LNHNHHLIL 9 Unmodified _LNHNHHLIL_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3111572265625 2 555.811982 1109.60941 0.63558 0.00035326 -0.25299 -0.00014061 0.38259 0.00021265 556.3128646000577 77.164 3.2088 70.988 68.832 72.041 -6.1757 377 178 3 0 0 0 0.042911 1 49244 49244 48.346 48.346 1 44007000 33794 8143 22630 23047 39649 39649 0.0589907603989559 LNHSTRFFI 9 Unmodified _LNHSTRFFI_ 0 0 0 REV__ENSG00000079435|ENST00000244289|LIPE REV__ENSG00000079435|ENST00000244289|LIPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8085327148438 2 567.806365 1133.59818 0.91637 0.00052032 1.1347 0.00064427 2.051 0.0011646 567.8076094919031 38.277 0.43661 33.908 33.655 34.092 -4.3689 86 26 4 0 0 0 0.14 1 22415 22415 29.082 2.1979 1 135710000 + 33795 17650 22631 23048 39650 39650 0.03672253945751436 LNHYFCDY 8 Unmodified _LNHYFCDY_ 0 0 0 ENSG00000179615|ENST00000641114|OR2AP1 ENSG00000179615|ENST00000641114|OR2AP1 ENSG00000179615|ENST00000641114|OR2AP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 358.8646545410156 3 358.816499 1073.42767 1.432 0.00051384 -3.8322 -0.0013751 -2.4002 -0.00086123 359.148775796695 91.155 0.45779 84.979 84.854 85.312 -6.1757 33 25 2 0 0 0 8.7369 1 60295 60295 3.5965 2.525 1 5679900 33796 8848 22632 23049 39651 39651 -0.10611024768036259 LNIEMKWPHF 10 Unmodified _LNIEMKWPHF_ 0 0 0 REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2306518554688 3 438.893631 1313.65906 1.396 0.00061269 1.1839 0.00051959 2.5799 0.0011323 439.22936260654495 90.894 0.67052 84.719 84.203 84.873 -6.1757 56 39 2 0 0 0 0.60623 1 59904 59904 6.1918 0.66855 1 9009800 + 33797 26389 22633 23050 39652 39652 0.014780229336565753 LNIKVPTEVF 10 Unmodified _LNIKVPTEVF_ 0 0 0 REV__ENSG00000116745|ENST00000262340|RPE65 REV__ENSG00000116745|ENST00000262340|RPE65 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3381958007812 2 580.339707 1158.66486 0.28346 0.00016451 -3.33 -0.0019326 -3.0466 -0.001768 580.337462732201 30.841 0.25529 30.871 30.737 30.992 0.030106 22 10 3 0 0 0 0.44373 1 16113 16113 19.257 1.122 1 1846000 + 33798 19064 22634 23051 39653 39653 0.09187444716985738 LNIMCAALNLI 11 Unmodified _LNIMCAALNLI_ 0 0 0 nc|ENSG00000093183|Q9BRL7-3|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C;ENSG00000093183|ENST00000264454|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C nc|ENSG00000093183|Q9BRL7-3|SEC22C MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8876647949219 3 396.887489 1187.64064 0.55675 0.00022097 0.23556 9.3489E-05 0.79231 0.00031446 396.8877945085458 46.663 0.33814 41.583 41.413 41.751 -5.0805 163 70 3 0 0 0 0.56638 1 28911 28911 7.0371 0 1 154260000 33799 1633 22635 23052 39654 39654 0.054321449674489486 LNIPKRFP 8 Unmodified _LNIPKRFP_ 0 0 0 REV__ENSG00000184209|ENST00000526639|SNRNP35 REV__ENSG00000184209|ENST00000526639|SNRNP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.8034057617188 2 492.803094 983.591636 0.41682 0.00020541 0.14977 7.3809E-05 0.56659 0.00027922 492.8031568072296 45.763 0.31881 45.735 45.565 45.884 -0.028011 42 15 4 0 0 0 0.6895 1 24659 24659 18.135 2.2878 1 35499000 + 33800 23406 22636 23053 39655 39655 0.09918360785036384 LNIQQNSKY 9 Unmodified _LNIQQNSKY_ 0 0 0 nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2928466796875 2 554.293288 1106.57202 0.50756 0.00028134 0.99815 0.00055327 1.5057 0.0008346 554.2937822727471 48.714 0.49523 48.342 48.219 48.714 -0.37172 63 26 3 0 0 0 0.25681 1 26124 26124 19.257 0 1 35277000 33801 7663 22637 23054 39656 39656 0.0229993998361806 LNIRLAVK 8 Unmodified _LNIRLAVK_ 0 0 0 ENST00000581120.1_1_17:61678442-61683801:+|nuORF;ENSG00000136463|ENST00000258975|TACO1 ENST00000581120.1_1_17:61678442-61683801:+|nuORF ENST00000581120.1_1_17:61678442-61683801:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.811279296875 2 463.810919 925.607286 -0.1425 -6.6091E-05 0.62401 0.00028942 0.48152 0.00022333 463.8112127296193 31.987 0.16107 32.017 31.948 32.109 0.030106 14 6 3 0 0 0 0.63229 1 16788 16788 23.148 2.6948 1 1509000 33802 4823 22638 23055 39657 39657 0.14150647302085417 LNITKKRK 8 Unmodified _LNITKKRK_ 0 0 0 REV__ENSG00000148513|ENST00000361713|ANKRD30A REV__ENSG00000148513|ENST00000361713|ANKRD30A MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8348693847656 2 500.834926 999.655299 1.7013 0.00085208 0.61599 0.00030851 2.3173 0.0011606 500.8344659028702 103.35 0.11602 97.177 97.134 97.25 -6.1757 39 26 2 0 0 0 0.80992 1 69292 69292 0.69038 0 1 6064700 + 33803 20957 22639 23056 39658 39658 0.1554572122213358 LNIVPPPL 8 Unmodified _LNIVPPPL_ 0 0 0 nc|ENSG00000138496|Q8IXQ6|PARP9;ENSG00000138496|ENST00000682323|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.7745056152344 2 431.773471 861.53239 1.0714 0.0004626 1.8415 0.00079513 2.9129 0.0012577 431.77343083394345 91.363 0.84742 85.187 85.042 85.89 -6.1757 63 47 2 0 0 0 0.80044 1 60389 60389 6.3541 0.59368 1 7815900 33804 5062 22640 23057 39659 39659 0.09608464770849423 LNIYKAETL 9 Unmodified _LNIYKAETL_ 0 0 0 REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6 REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8023071289062 2 532.802957 1063.59136 0.3761 0.00020039 0.019349 1.0309E-05 0.39545 0.0002107 532.8028556090461 79.035 0.34341 79.09 78.913 79.257 0.05497 34 13 3 0 0 0 0.2143 1 43740 43740 21.747 3.6117 1 11342000 + 33805 21934 22641 23058 39660 39660 0.062108962745242025 LNKAIFYY 8 Unmodified _LNKAIFYY_ 0 0 0 REV__ENSG00000126010|ENST00000380289|GRPR REV__ENSG00000126010|ENST00000380289|GRPR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.826171875 2 516.28166 1030.54877 0.90115 0.00046525 1.2027 0.00062092 2.1038 0.0010862 516.2824083215668 65.617 0.16563 65.617 65.498 65.664 7.6294E-06 11 7 2 0 0 0 8.7369 1 35956 35956 5.2307 0.47466 1 1529900 + 33806 19537 22642 23059 39661 39661 0.03471545936963594 LNKDDQLGVVC 11 Unmodified _LNKDDQLGVVC_ 0 0 0 REV__ENSG00000156232|ENST00000286760|WHAMM REV__ENSG00000156232|ENST00000286760|WHAMM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.304443359375 2 602.305538 1202.59652 0.0018715 1.1272E-06 -0.093131 -5.6093E-05 -0.091259 -5.4966E-05 602.3051488893811 60.404 0.22309 59.913 59.786 60.009 -0.49079 21 10 3 0 0 0 0.28407 1 32890 32890 27.629 3.6082 1 4438900 + 33807 21321 22643 23060 39662 39662 0.0033283207483236765 LNKDDQLGVVC 11 Unmodified _LNKDDQLGVVC_ 0 0 0 REV__ENSG00000156232|ENST00000286760|WHAMM REV__ENSG00000156232|ENST00000286760|WHAMM MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 602.305538 1202.59652 0.0018715 1.1272E-06 -0.093131 -5.6093E-05 -0.091259 -5.4966E-05 602.3051488893811 60.404 0.22309 59.913 59.786 60.009 -0.49079 -0.0393 0.00045268 NaN 27.629 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4438900 + 33808 21321 22643 23060 0.0033283207483236765 LNKDDQLGVVC 11 Unmodified _LNKDDQLGVVC_ 0 0 0 REV__ENSG00000156232|ENST00000286760|WHAMM REV__ENSG00000156232|ENST00000286760|WHAMM MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 602.305538 1202.59652 0.17072 0.00010283 -2.9671 -0.0017871 -2.7964 -0.0016843 602.3041717981529 60.045 0.093975 59.991 59.958 60.052 -0.053059 0.0393 -0.0030093 NaN 27.629 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3023700 + 33809 21321 22643 23060 0.0033283207483236765 LNKEIYFH 8 Unmodified _LNKEIYFH_ 0 0 0 ENSG00000130561|ENST00000409110|SAG ENSG00000130561|ENST00000409110|SAG ENSG00000130561|ENST00000409110|SAG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8040771484375 2 532.282192 1062.54983 0.2359 0.00012557 0.58924 0.00031364 0.82514 0.00043921 532.2826762443193 59.049 0.23308 58.558 58.474 58.707 -0.49079 16 10 2 0 0 0 8.7369 1 32155 32155 5.7604 0 1 1882400 33810 4226 22644 23061 39663 39663 0.021057603058579843 LNKERPSL 8 Unmodified _LNKERPSL_ 0 0 0 nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ nc|ENSG00000065675|Q04759-3|PRKCQ nc|ENSG00000065675|Q04759-3|PRKCQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2839660644531 2 478.779816 955.545079 1.7237 0.00082529 -1.821 -0.00087184 -0.097229 -4.6551E-05 478.7773743798451 100.84 0.17725 94.667 94.556 94.734 -6.1757 23 11 3 0 0 0 0.72953 1 67537 67537 14.582 0 1 27541000 33811 914 22645 23062 39664 39664 0.0655287616308442 LNKGTEHYSYP 11 Unmodified _LNKGTEHYSYP_ 0 0 0 ENSG00000125170|ENST00000340099|DOK4 ENSG00000125170|ENST00000340099|DOK4 ENSG00000125170|ENST00000340099|DOK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8801879882812 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 79.591 1 79.591 79.091 80.091 0 0 0 0 0.94299 1 44207 44207 0.36667 0 1 33812 3833 22646 23063 39665 39665 -0.026887096787959308 LNKIRIAAGP 10 Unmodified _LNKIRIAAGP_ 0 0 0 REV__ENSG00000146376|ENST00000368149|ARHGAP18 REV__ENSG00000146376|ENST00000368149|ARHGAP18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2499389648438 2 526.832383 1051.65021 0.70402 0.0003709 -0.20425 -0.00010761 0.49977 0.0002633 527.3335090917251 39.577 0.22309 35.126 35.058 35.281 -4.4509 17 13 2 0 0 0 0.23566 1 23526 23526 7.2892 1.0834 1 7146900 + 33813 20828 22647 23064 39666 39666 0.12645417359499334 LNKKVKESF 9 Unmodified _LNKKVKESF_ 0 0 0 REV__ENSG00000170379|ENST00000684770|TCAF2 REV__ENSG00000170379|ENST00000684770|TCAF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.6436767578125 2 546.824224 1091.63389 1.2046 0.0006587 1.3663 0.00074713 2.5709 0.0014058 547.3255431431173 97.78 0.14948 91.604 91.537 91.687 -6.1757 24 10 3 0 0 0 0.17275 1 64833 64833 15.847 0 1 55542000 + 33814 22475 22648 23065 39667 39667 0.09174291402769086 LNKLIEREDV 10 Unmodified _LNKLIEREDV_ 0 0 0 REV__ENSG00000183862|ENST00000329903|CNGA2 REV__ENSG00000183862|ENST00000329903|CNGA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3041381835938 2 614.848427 1227.6823 3.7612 0.0023126 2.4846 0.0015276 6.2457 0.0038402 614.8499733261232 98.016 0.49162 97.998 97.791 98.283 -0.018188 29 17 2 0 0 0 0.23325 1 54498 54498 10.074 1.9184 1 636910 + 33815 23382 22649 23066 39668 39668 0.07756740251988958 LNKLLGGV 8 Unmodified _LNKLLGGV_ 0 0 0 ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;ENSG00000164508|ENST00000297012|H2AC1 ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2647399902344 2 407.263271 812.511988 NaN NaN NaN NaN NaN NaN NaN 88.345 1 88.345 87.845 88.845 0 0 0 0 0.97444 1 48902 48902 0.79363 0 1 33816 9238 22650 23067 39669 39669 0.09823294111049563 LNKMKHKF 8 Unmodified _LNKMKHKF_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF;REV__nc|ENSG00000100129|Q9Y262-2|EIF3L REV__nc|ENSG00000100129|Q9Y262-2|EIF3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3035888671875 2 523.302404 1044.59026 NaN NaN NaN NaN NaN NaN NaN 75.098 1 75.144 74.644 75.644 0.045959 0 0 0 0.94061 1 41409 41409 12.532 0.89125 1 + 33817 27266;18016 22651 23068 39670 39670 0.06974403424624143 LNKRCVMCLF 10 Unmodified _LNKRCVMCLF_ 0 0 0 REV__ENSG00000175183|ENST00000311083|CSRP2 REV__ENSG00000175183|ENST00000311083|CSRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.3151245117188 2 613.813964 1225.61338 0.42752 0.00026242 -0.26052 -0.00015991 0.167 0.00010251 613.8134574544042 76.19 0.48047 76.238 76.037 76.518 0.047943 29 19 2 0 0 0 0.52888 1 42061 42061 14.838 2.3067 1 4195500 + 33818 22847 22652 23069 39671 39671 0.009593381554395819 LNKRGAAG 8 Unmodified _LNKRGAAG_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.7329711914062 2 393.732669 785.450785 1.3571 0.00053433 -0.93995 -0.00037009 0.41714 0.00016424 393.73240847869874 20.179 0.4474 17.523 17.312 17.76 -2.6564 69 29 3 0 0 0 0.79669 1 10779 10779 8.5933 1.304 1 19984000 + 33819 17002 22653 23070 39672 39672 0.04947782131614531 LNKRIRYLYKH 11 Unmodified _LNKRIRYLYKH_ 0 0 0 ENSG00000111639|ENST00000229238|MRPL51 ENSG00000111639|ENST00000229238|MRPL51 ENSG00000111639|ENST00000229238|MRPL51 MSMS AL20221201_MKP_PDAC_01 4 501.9682006835938 3 501.96841 1502.8834 NaN NaN NaN NaN NaN NaN NaN 108.84 1 102.66 102.16 103.16 -6.1757 0 0 0 0.94338 1 72720 72720 0.08335 0 1 33820 2800 22654 23071 39673 39673 0.15207474079170424 LNKSWIIALG 10 Unmodified _LNKSWIIALG_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8020629882812 2 557.834591 1113.65463 1.3187 0.00073564 -1.6781 -0.00093611 -0.35937 -0.00020047 557.83420737869 66.278 0.19591 66.288 66.166 66.361 0.0095673 15 9 2 0 0 0 0.23343 1 36321 36321 10.8 2.2062 1 2179600 33821 10920 22655 23072 39674 39674 0.1023488178241223 LNKWLHELF 9 Unmodified _LNKWLHELF_ 0 0 0 REV__nc|ENSG00000248124|Q2M238|RRN3P1 REV__nc|ENSG00000248124|Q2M238|RRN3P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3327026367188 2 600.332216 1198.64988 0.013855 8.3178E-06 0.30828 0.00018507 0.32213 0.00019339 600.3325668903906 76.506 0.2285 76.553 76.467 76.696 0.047943 17 9 2 0 0 0 0.30562 1 42221 42221 16.942 1.0951 1 2362800 + 33822 29973 22656 23073 39675 39675 0.05849997639643334 LNKWLHELF 9 Unmodified _LNKWLHELF_ 0 0 0 REV__nc|ENSG00000248124|Q2M238|RRN3P1 REV__nc|ENSG00000248124|Q2M238|RRN3P1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 600.332216 1198.64988 0.013855 8.3178E-06 0.30828 0.00018507 0.32213 0.00019339 600.3325668903906 76.506 0.2285 76.553 76.467 76.696 0.047943 0 0 NaN 16.942 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2362800 + 33823 29973 22656 23073 0.05849997639643334 LNLCPPALLK 10 Unmodified _LNLCPPALLK_ 0 0 0 REV__ENSG00000220201|ENST00000707000|ZGLP1 REV__ENSG00000220201|ENST00000707000|ZGLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.325927734375 2 541.325545 1080.63654 0.93452 0.00050588 -0.44913 -0.00024313 0.48539 0.00026275 541.3253722809563 79.029 0.9673 72.854 72.468 73.435 -6.1757 141 55 3 0 0 0 0.067957 3 51774 51774;51909;52038 53.833 15.657 1 29744000 + 33824 24356 22657 23074 39676;39677;39678 39676 0.09944423536035174 LNLCPPALLK 10 Unmodified _LNLCPPALLK_ 0 0 0 REV__ENSG00000220201|ENST00000707000|ZGLP1 REV__ENSG00000220201|ENST00000707000|ZGLP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.7615966796875 2 541.325545 1080.63654 0.93452 0.00050588 -0.44913 -0.00024313 0.48539 0.00026275 541.3253722809563 79.029 0.9673 72.854 72.468 73.435 -6.1757 141 55 3 0 0 0 0.12346 1 52070 52070 39.95 21.803 1 29744000 + 33825 24356 22657 23074 39679 39679 0.09944423536035174 LNLCPPALLK 10 Unmodified _LNLCPPALLK_ 0 0 0 REV__ENSG00000220201|ENST00000707000|ZGLP1 REV__ENSG00000220201|ENST00000707000|ZGLP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.325545 1080.63654 0.048809 2.6421E-05 -3.0311 -0.0016408 -2.9823 -0.0016144 541.3239314272624 72.514 0.21512 72.556 72.465 72.68 0.041725 -0.14884 -0.0025868 NaN 53.833 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2542800 + 33826 24356 22657 23074 0.09944423536035174 LNLEEREGL 9 Unmodified _LNLEEREGL_ 0 0 0 REV__ENSG00000105443|ENST00000452733|CYTH2 REV__ENSG00000105443|ENST00000452733|CYTH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7858276367188 2 536.785296 1071.55604 -0.11044 -5.9285E-05 0.86312 0.00046331 0.75267 0.00040402 536.7857993687416 25.94 0.34166 22.989 22.788 23.13 -2.9511 39 22 2 0 0 0 0.1773 1 14164 14164 25.399 0 1 21249000 + 33827 18426 22658 23075 39680 39680 0.023122337467157195 LNLFAVTSGF 10 Unmodified _LNLFAVTSGF_ 0 0 0 REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13 REV__nc|ENSG00000164893|Q8TCU3-2|SLC7A13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.78955078125 2 534.78985 1067.56515 0.31449 0.00016819 0.45254 0.00024201 0.76703 0.0004102 534.7903106116377 57.903 0.59332 57.413 56.984 57.577 -0.48974 52 28 3 0 0 0 0.54684 1 31292 31292 13.906 1.3745 1 9761800 + 33828 21960 22659 23076 39681 39681 0.034066271030496864 LNLFMKLHVCL 11 Unmodified _LNLFMKLHVCL_ 0 0 0 REV__ENST00000321521.13_1_5:102537386-102537461:+|nuORF REV__ENST00000321521.13_1_5:102537386-102537461:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 444.75048828125 3 444.25065 1329.73012 0.35752 0.00015883 1.4933 0.00066341 1.8508 0.00082224 444.2513642544384 93.388 0.13293 87.212 87.139 87.272 -6.1757 15 9 2 0 0 0 0.2909 1 61759 61759 10.315 0 1 14033000 + 33829 25512 22660 23077 39682 39682 0.07844399646842248 LNLKARARPI 10 Unmodified _LNLKARARPI_ 0 0 0 REV__nc|ENSG00000161955|O75888-5|TNFSF13 REV__nc|ENSG00000161955|O75888-5|TNFSF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5846557617188 3 384.583897 1150.72986 1.1655 0.00044824 -1.0813 -0.00041584 0.084238 3.2396E-05 384.5834675951277 39.561 0.55703 35.11 34.796 35.353 -4.4509 56 34 2 0 0 0 0.67046 1 23531 23531 6.1918 0.78914 1 20653000 + 33830 21616 22661 23078 39683 39683 0.16052484033502878 LNLLLYLALFF 11 Unmodified _LNLLLYLALFF_ 0 0 0 ENSG00000164112|ENST00000643802|SMIM43 ENSG00000164112|ENST00000643802|SMIM43 ENSG00000164112|ENST00000643802|SMIM43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2726745605469 3 447.272325 1338.79515 1.0998 0.0004919 -0.20949 -9.37E-05 0.89029 0.0003982 447.27220252968885 100.68 0.36124 100.64 100.53 100.9 -0.04216 34 13 5 0 0 0 0.7453 1 55935 55935 0 0 1 104730000 33831 7142 22662 23079 39684 39684 0.13930040715945324 LNLMFENAKR 10 Unmodified _LNLMFENAKR_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MSMS AL20221201_MKP_PDAC_01 4 618.32958984375 2 618.33189 1234.64923 NaN NaN NaN NaN NaN NaN NaN 45.169 1 40.317 39.817 40.817 -4.852 0 0 0 0.68942 1 27681 27681 17.113 4.0704 1 33832 7101 22663 23080 39685 39685 0.04128834928269498 LNLNYEEP 8 Unmodified _LNLNYEEP_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2406005859375 2 496.24019 990.465826 -0.11852 -5.8814E-05 0.56405 0.00027991 0.44553 0.00022109 496.24021609519997 61.369 0.29495 60.879 60.756 61.051 -0.48932 28 13 3 0 0 0 0.80311 1 33425 33425 4.756 0 1 1869700 + 33833 20840 22664 23081 39686 39686 -0.029788155817072948 LNLQYFFDH 9 Unmodified _LNLQYFFDH_ 0 0 0 ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000315147.8_1_5:70265933-70281744:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP ENST00000512908.2_1_5:70398727-70422449:-|nuORF ENST00000512908.2_1_5:70398727-70422449:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7957763671875 2 598.790381 1195.56621 0.15439 9.2448E-05 3.7069 0.0022197 3.8613 0.0023121 598.7954277364133 51.159 0.71825 50.746 50.438 51.156 -0.41351 88 36 4 0 0 0 0.16226 1 27529 27529 26.884 9.7708 1 20392000 33834 10746 22665 23082 39687 39687 -0.02375158528047905 LNLRIKYII 9 Unmodified _LNLRIKYII_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5855712890625 3 382.585015 1144.73321 1.7346 0.00066361 -0.75171 -0.00028759 0.98284 0.00037602 382.58471799979145 88.163 0.63951 81.988 81.652 82.292 -6.1757 86 35 3 0 0 0 0.13231 2 58096 57969;58096 29.841 3.5035 1 25042000 33835 6592 22666 23083 39688;39689 39689 0.16663734087524062 LNLTELPAF 9 Unmodified _LNLTELPAF_ 0 0 0 REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2 REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2828369140625 2 509.2844 1016.55425 1.1585 0.00059002 -1.8898 -0.00096244 -0.73127 -0.00037242 509.2843019613492 100.77 0.42011 94.593 94.503 94.923 -6.1757 51 26 4 0 0 0 0.12841 1 67634 67634 30.225 12.09 1 112970000 + 33836 19706 22667 23084 39690 39690 0.04663224728756177 LNLWQKIR 8 Unmodified _LNLWQKIR_ 0 0 0 ENSG00000172421|ENST00000305286|EFCAB3;nc|ENSG00000172421|Q8N7B9-2|EFCAB3;ENST00000493710.1_1_7:128106625-128109222:+|nuORF ENSG00000172421|ENST00000305286|EFCAB3;ENST00000493710.1_1_7:128106625-128109222:+|nuORF ENSG00000172421|ENST00000305286|EFCAB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2769775390625 2 535.827101 1069.63965 1.2806 0.00068618 -0.77421 -0.00041484 0.50639 0.00027134 535.8265924005823 46.648 0.32227 46.614 46.39 46.712 -0.033417 22 15 2 0 0 0 8.7369 1 25056 25056 5.2307 0 1 1809700 33837 8215;14320 22668 23085 39691 39691 0.10761434705068496 LNMVNKFF 8 Unmodified _LNMVNKFF_ 0 0 0 REV__ENSG00000104848|ENST00000221444|KCNA7 REV__ENSG00000104848|ENST00000221444|KCNA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3324584960938 2 506.767863 1011.52117 0.39968 0.00020255 0.3703 0.00018765 0.76998 0.0003902 507.2702358028292 74.967 0.10478 75.013 74.92 75.025 0.045959 6 4 2 0 0 0 8.7369 1 41313 41313 5.7604 0 1 641940 + 33838 18378 22669 23086 39692 39692 0.015873194050755046 LNNDVLTECAL 11 Unmodified _LNNDVLTECAL_ 0 0 0 REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2 REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.797119140625 2 602.797546 1203.58054 0.64992 0.00039177 -0.9925 -0.00059828 -0.34258 -0.00020651 602.7968567089121 68 0.93089 67.518 67.208 68.139 -0.48218 140 42 6 0 0 0 0.39949 2 37187 37082;37187 21.537 3.402 1 288620000 + 33839 17088 22670 23087 39693;39694 39694 -0.013108741620726505 LNNLKWTIK 9 Unmodified _LNNLKWTIK_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|70|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|70|3|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.217041015625 3 377.229119 1128.66553 -0.47123 -0.00017776 -0.33603 -0.00012676 -0.80725 -0.00030452 377.2291210803257 19.932 0.158 19.932 19.831 19.989 0 38 19 3 0 0 0 0.21021 1 9975 9975 7.609 0 1 1419700 + 33840 29444 22671 23088 39695 39695 0.1063428415668568 LNNLQNIIY 9 Unmodified _LNNLQNIIY_ 0 0 0 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000532826.5_1_1:236689310-236702461:+|nuORF;ENST00000366583.6_1_1:236689310-236706138:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MSMS AL20221201_MKP_PDAC_01 4 552.8042602539062 2 552.806031 1103.59751 NaN NaN NaN NaN NaN NaN NaN 76.211 1 70.036 69.536 70.536 -6.1757 0 0 0 0.18351 1 49855 49855 28.487 3.0875 1 33841 3270 22672 23089 39696 39696 0.04985414506040797 LNPARKTRP 9 Unmodified _LNPARKTRP_ 0 0 0 ENST00000475515.1_1_2:176796882-176802216:-|nuORF;ENST00000479012.1_1_2:176794697-176802294:-|nuORF;nc|ENSG00000144320|Q9C0E8-3|LNPK;nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK ENST00000475515.1_1_2:176796882-176802216:-|nuORF ENST00000475515.1_1_2:176796882-176802216:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2260131835938 3 351.548964 1051.62506 -0.0073992 -2.6012E-06 1.9498 0.00068546 1.9424 0.00068286 351.54946717034176 20.011 0.12189 20.019 19.966 20.087 0.0078506 12 5 3 0 0 0 0.21701 1 10229 10229 3.8763 1.3778 1 465320 33842 5599 22673 23090 39697 39697 0.1013136255696736 LNPDSNPP 8 Unmodified _LNPDSNPP_ 0 0 0 REV__ENSG00000107164|ENST00000319725|FUBP3 REV__ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.406005859375 1 853.405023 852.397747 0.47328 0.0004039 0.35214 0.00030052 0.82541 0.00070441 853.4052839597963 60.357 0.35791 60.357 60.178 60.536 0 27 15 2 0 0 0 0.32798 1 33706 33706 52.268 18.166 1 2696700 + 33843 18553 22674 23091 39698 39698 -0.03435640441716714 LNPEWRMM 8 Unmodified _LNPEWRMM_ 0 0 0 ENST00000596895.1_1_19:49950569-49951231:-|nuORF;ENST00000601053.5_2_19:49950039-49952749:-|nuORF;ENSG00000104872|ENST00000262265|PIH1D1 ENST00000596895.1_1_19:49950569-49951231:-|nuORF ENST00000596895.1_1_19:49950569-49951231:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.50537109375 3 359.505379 1075.49431 NaN NaN NaN NaN NaN NaN NaN 92.547 1 86.371 85.871 86.871 -6.1757 0 0 0 0.96186 1 61206 61206 8.1555 2.8586 1 33844 2246 22675 23092 39699 39699 -0.04042112477759474 LNPHLPLEAF 10 Unmodified _LNPHLPLEAF_ 0 0 0 ENST00000462992.1_1_1:171292253-171302174:+|nuORF;ENSG00000076258|ENST00000367749|FMO4 ENST00000462992.1_1_1:171292253-171302174:+|nuORF ENST00000462992.1_1_1:171292253-171302174:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7499389648438 2 575.816399 1149.61824 0.44269 0.00025491 0.61388 0.00035348 1.0566 0.00060839 575.8159566576734 63.375 0.21948 62.889 62.729 62.948 -0.48617 12 9 2 0 0 0 0.23227 1 34567 34567 6.7232 1.8262 1 730280 33845 1184 22676 23093 39700 39700 0.04942004885697315 LNPHNILQMF 10 Unmodified _LNPHNILQMF_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5489196777344 3 409.549864 1225.62776 0.85874 0.0003517 -2.0383 -0.00083477 -1.1795 -0.00048308 409.8832325824581 18.451 0.093702 15.83 15.802 15.896 -2.6215 13 10 2 0 0 0 0.67413 1 9736 9736 5.7834 0.48655 1 1904500 + 33846 17564 22677 23094 39701 39701 0.023974498995585236 LNPLGNKFSIG 11 Unmodified _LNPLGNKFSIG_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2205505371094 3 387.220513 1158.63971 1.1309 0.0004379 -1.4748 -0.00057106 -0.3439 -0.00013316 387.2199819296416 18.566 0.18981 15.945 15.871 16.061 -2.6215 34 20 2 0 0 0 0.60863 1 9823 9823 10.899 0.099449 1 2754100 33847 9772 22678 23095 39702 39702 0.0667338991440829 LNPLTPMHVF 10 Unmodified _LNPLTPMHVF_ 0 0 0 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8126220703125 2 584.812802 1167.61105 0.479 0.00028013 0.77226 0.00045162 1.2513 0.00073175 584.8130500740341 79.796 0.48935 79.851 79.602 80.092 0.054977 79 19 6 0 0 0 0.52888 1 43984 43984 14.838 0.43289 1 77782000 + 33848 23226 22679 23096 39703 39703 0.03394949013636506 LNPRNCSF 8 Unmodified _LNPRNCSF_ 0 0 0 REV__nc|ENSG00000176783|Q96T51-3|RUFY1 REV__nc|ENSG00000176783|Q96T51-3|RUFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7299194335938 2 475.729269 949.443985 0.60603 0.00028831 1.3005 0.00061869 1.9065 0.00090699 475.72973414325156 79.165 0.3389 78.679 78.485 78.824 -0.48595 25 14 2 0 0 0 0.80143 1 43376 43376 5.7604 1.0044 1 680660 + 33849 29805 22680 23097 39704 39704 -0.03275898811261868 LNPTPQPEKF 10 Unmodified _LNPTPQPEKF_ 0 0 0 REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8775329589844 3 390.876634 1169.60807 0.61892 0.00024192 2.1867 0.00085475 2.8057 0.0010967 390.8777094837876 52.389 0.27605 52.33 52.21 52.486 -0.058918 23 12 3 0 0 0 0.69126 1 28411 28411 3.8763 1.1411 1 3160500 + 33850 25306 22681 23098 39705 39705 0.030053971604502294 LNPTPQPEKF 10 Unmodified _LNPTPQPEKF_ 0 0 0 REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 390.876634 1169.60807 -0.075538 -2.9526E-05 0.89606 0.00035025 0.82052 0.00032072 391.21090844412515 52.454 0.064972 52.454 52.402 52.467 0 0.06225 -0.0013484 NaN 3.8763 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 512320 + 33851 25306 22681 23098 0.030053971604502294 LNPTPQPEKF 10 Unmodified _LNPTPQPEKF_ 0 0 0 REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF REV__ENST00000300181.6_2_7:100075638-100075929:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 390.876634 1169.60807 0.61892 0.00024192 2.1867 0.00085475 2.8057 0.0010967 390.8777094837876 52.389 0.27605 52.33 52.21 52.486 -0.058918 -0.06225 0.00016515 NaN 3.8763 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3160500 + 33852 25306 22681 23098 0.030053971604502294 LNPYTLYTFRI 11 Unmodified _LNPYTLYTFRI_ 0 0 0 ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF ENSG00000113594|ENST00000453190|LIFR ENSG00000113594|ENST00000453190|LIFR MSMS AL20221201_MKP_PDAC_01 4 467.5921020507812 3 467.590605 1399.74999 NaN NaN NaN NaN NaN NaN NaN 25.066 1 22.183 21.683 22.683 -2.8831 0 0 0 0.90499 1 13691 13691 7.0371 2.3212 1 33853 2979 22682 23099 39706 39706 0.0661019018280058 LNQCFREF 8 Unmodified _LNQCFREF_ 0 0 0 REV__ENST00000374884.2_2_X:62570747-62571134:-|nuORF REV__ENST00000374884.2_2_X:62570747-62571134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7498779296875 2 528.750201 1055.48585 0.39628 0.00020953 -0.81612 -0.00043152 -0.41984 -0.00022199 528.7495200025254 76.268 0.44377 76.268 75.999 76.443 0 34 18 3 0 0 0 0.80624 1 42477 42477 2.8892 0 1 2874700 + 33854 26193 22683 23100 39707 39707 -0.03967343122758393 LNQLGKHVQ 9 Unmodified _LNQLGKHVQ_ 0 0 0 ENSG00000151687|ENST00000684021|ANKAR ENSG00000151687|ENST00000684021|ANKAR ENSG00000151687|ENST00000684021|ANKAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7991943359375 2 518.79854 1035.58253 0.3142 0.00016301 0.51589 0.00026764 0.83009 0.00043065 518.7985735063849 24.578 0.36283 21.695 21.49 21.852 -2.8831 27 19 2 0 0 0 0.45045 1 13310 13310 10.074 2.465 1 2750900 33855 6135 22684 23101 39708 39708 0.06615967428706426 LNQRLRPTL 9 Unmodified _LNQRLRPTL_ 0 0 0 REV__ENST00000490170.5_1_1:27677209-27677560:+|nuORF REV__ENST00000490170.5_1_1:27677209-27677560:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8411254882812 2 555.840739 1109.66693 0.34918 0.00019409 0.67359 0.00037441 1.0228 0.00056849 555.8411098931557 34.269 0.25231 34.296 34.163 34.416 0.027401 28 11 3 0 0 0 0.1685 1 18034 18034 21.747 0 1 6204100 + 33856 27875 22685 23102 39709 39709 0.11647918245466826 LNQRLRPTL 9 Unmodified _LNQRLRPTL_ 0 0 0 REV__ENST00000490170.5_1_1:27677209-27677560:+|nuORF REV__ENST00000490170.5_1_1:27677209-27677560:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.84130859375 2 555.840739 1109.66693 0.46962 0.00026103 0.71717 0.00039863 1.1868 0.00065966 555.8412371625094 38.526 0.35358 34.157 33.98 34.333 -4.3689 51 22 3 0 0 0 0.46162 1 22702 22702 9.3831 0.63772 1 34476000 + 33857 27875 22685 23102 39710 39710 0.11647918245466826 LNRDLLYYF 9 Unmodified _LNRDLLYYF_ 0 0 0 REV__CON__Q9N2I2 REV__CON__Q9N2I2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.818115234375 2 608.821681 1215.62881 NaN NaN NaN NaN NaN NaN NaN 62.329 1 62.329 61.829 62.829 0 0 0 0 0.6557 1 34763 34763 10.824 2.6684 1 + + 33858 16889 22686 23103 39711 39711 0.02961987540129485 LNRKRVLIPL 10 Unmodified _LNRKRVLIPL_ 0 0 0 ENST00000433446.1_1_7:86781137-86781239:-|nuORF ENST00000433446.1_1_7:86781137-86781239:-|nuORF ENST00000433446.1_1_7:86781137-86781239:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1221.486083984375 1 1221.81539 1220.80811 0.67818 0.00082861 -0.92932 -0.0011355 -0.25114 -0.00030684 1222.812819729325 69.478 0.14977 63.303 63.227 63.377 -6.1757 10 7 2 0 0 0 0.24007 1 45357 45357 0.45834 0.057624 1 16600000 33859 13288 22687 23104 39712 39712 0.20653916618766743 LNRKTMIMQL 10 Unmodified _LNRKTMIMQL_ 0 0 0 REV__ENST00000487151.1_1_3:40352488-40352533:+|nuORF REV__ENST00000487151.1_1_3:40352488-40352533:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5718383789062 3 416.570271 1246.68898 1.4181 0.00059073 0.70453 0.00029349 2.1226 0.00088422 416.5703990564048 20.618 0.27075 17.925 17.781 18.052 -2.693 28 16 2 0 0 0 0.63399 1 10979 10979 5.4027 0 1 1953500 + 33860 27820 22688 23105 39713 39713 0.07550638607358451 LNRPKVNKIVE 11 Unmodified _LNRPKVNKIVE_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2696533203125 3 437.269866 1308.78777 0.31913 0.00013955 0.6467 0.00028278 0.96583 0.00042233 437.27014229457325 19.605 0.24931 19.612 19.529 19.779 0.0078487 41 13 4 0 0 0 0.73114 1 9953 9953 1.3296 0.11481 1 6456400 33861 9593 22689 23106 39714 39714 0.14572701168253843 LNRSLDLFT 9 Unmodified _LNRSLDLFT_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.29638671875 2 539.798206 1077.58186 -0.09454 -5.1032E-05 -0.64083 -0.00034592 -0.73537 -0.00039695 539.7983070588982 45.613 0.44315 45.289 45.122 45.565 -0.32425 66 25 4 0 0 0 0.11005 1 24493 24493 34.402 0.29928 1 180050000 + 33862 17191 22690 23107 39715 39715 0.0461712798901317 LNRTPANL 8 Unmodified _LNRTPANL_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7591857910156 2 449.758884 897.503215 -0.060451 -2.7188E-05 1.4525 0.00065327 1.392 0.00062608 449.7594904219401 38.276 0.36888 37.989 37.827 38.196 -0.28687 34 16 3 0 0 0 0.64853 1 20210 20210 21.747 0 1 5773100 33863 1857 22691 23108 39716 39716 0.05036320474573586 LNRTPLDGVGF 11 Unmodified _LNRTPLDGVGF_ 0 0 0 REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3 REV__nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2188720703125 3 396.8839 1187.62987 0.31741 0.00012598 2.9201 0.0011589 3.2375 0.0012849 397.21919288251013 15.146 0.12821 12.619 12.572 12.7 -2.5273 20 16 2 0 0 0 0.67477 1 7754 7754 6.6235 3.3038 1 3185300 + 33864 24590 22692 23109 39717 39717 0.04356201909035917 LNSAVRSCDLF 11 Unmodified _LNSAVRSCDLF_ 0 0 0 REV__ENST00000532470.2_1_11:36619200-36631688:+|nuORF REV__ENST00000532470.2_1_11:36619200-36631688:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3087158203125 2 612.805705 1223.59686 0.42306 0.00025925 0.44659 0.00027367 0.86965 0.00053292 612.8058956873992 72.29 0.39503 72.331 72.132 72.527 0.041725 45 18 4 0 0 0 0.24542 1 39765 39765 29.082 5.9332 1 9329600 + 33865 28464 22693 23110 39718 39718 -0.005997482053089698 LNSHWFWLKW 10 Unmodified _LNSHWFWLKW_ 0 0 0 nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.912353515625 3 472.911902 1415.71388 0.026152 1.2368E-05 1.2602 0.00059599 1.2864 0.00060835 473.2467712497819 33.786 0.18535 33.815 33.696 33.881 0.028934 11 7 2 0 0 0 0.71981 1 17817 17817 0.69767 0.07084 1 1020000 33866 9963 22694 23111 39719 39719 0.02264777796585804 LNSIRKDILAH 11 Unmodified _LNSIRKDILAH_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2552490234375 3 427.254216 1278.74082 NaN NaN NaN NaN NaN NaN NaN 30.447 1 30.477 29.977 30.977 0.030106 0 0 0 0.91362 1 15919 15919 6.6235 2.2173 1 33867 8841 22695 23112 39720 39720 0.11259841617129496 LNSIVHKA 8 Unmodified _LNSIVHKA_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant;nc|ENSG00000177409|Q8IVG5-2|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MSMS AL20221201_MKP_PDAC_01 4 441.2646179199219 2 441.263802 880.513051 NaN NaN NaN NaN NaN NaN NaN 41.51 1 36.902 36.402 37.402 -4.6079 0 0 0 0.4236 1 24937 24937 50.855 0 1 33868 8680 22696 23113 39721 39721 0.06801508479941276 LNSKDIINL 9 Unmodified _LNSKDIINL_ 0 0 0 REV__ENSG00000186136|ENST00000334266|TAS2R42 REV__ENSG00000186136|ENST00000334266|TAS2R42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.301025390625 2 515.300581 1028.58661 0.3482 0.00017943 -1.1246 -0.0005795 -0.77639 -0.00040007 515.3000246676768 59.202 0.25875 59.202 59.004 59.262 0 24 10 3 0 0 0 0.070838 1 32958 32958 39.957 3.8303 1 2597100 + 33869 23553 22697 23114 39722 39722 0.07346012131756652 LNSLRCRH 8 Unmodified _LNSLRCRH_ 0 0 0 REV__ENSG00000033100|ENST00000035307|CHPF2 REV__ENSG00000033100|ENST00000035307|CHPF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.8161926269531 2 499.76926 997.523967 1.1488 0.00057415 1.125 0.00056224 2.2738 0.0011364 499.7703256475123 72.021 0.13388 65.845 65.764 65.898 -6.1757 12 7 2 0 0 0 8.7369 1 47144 47144 15.847 5.0233 1 15400000 + 33870 17153 22698 23115 39723 39723 0.02510587582582957 LNSPFDLDM 9 Unmodified _LNSPFDLDM_ 0 0 0 REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.286376953125 2 526.241875 1050.4692 1.1426 0.00060129 -0.84985 -0.00044723 0.29276 0.00015406 526.742046363414 54.408 0.1102 54.408 54.352 54.462 0 7 4 2 0 0 0 0.18521 1 30178 30178 7.2892 0.56607 1 567130 + 33871 24279 22699 23116 39724 39724 -0.05401888799360677 LNSPFSSEVL 10 Unmodified _LNSPFSSEVL_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.6436767578125 2 546.782222 1091.54989 1.1898 0.00065054 0.34945 0.00019107 1.5392 0.00084162 546.7813676196619 98.067 0.47469 91.892 91.553 92.027 -6.1757 62 31 3 0 0 0 0.22327 1 64833 64833 13.906 2.2658 1 19196000 + 33872 21275 22700 23117 39725 39725 0.007777155151870829 LNSRFLVQSI 10 Unmodified _LNSRFLVQSI_ 0 0 0 ENST00000328965.8_2_11:120100260-120100626:+|nuORF ENST00000328965.8_2_11:120100260-120100626:+|nuORF ENST00000328965.8_2_11:120100260-120100626:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 392.8766784667969 3 392.896029 1175.66626 NaN NaN NaN NaN NaN NaN NaN 76.629 1 70.453 69.953 70.953 -6.1757 0 0 0 0.73227 1 50124 50124 9.7643 1.0125 1 33873 11842 22701 23118 39726 39726 0.08545078805764206 LNSSQDFG 8 Unmodified _LNSSQDFG_ 0 0 0 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 REV__nc|ENSG00000267508|Q96NJ3-2|ZNF285 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.38427734375 1 867.384288 866.377011 -0.6061 -0.00052572 1.1268 0.00097733 0.52065 0.00045161 867.3851235095584 48.655 0.27436 48.655 48.511 48.786 0 20 12 2 0 0 0 0.1875 1 26696 26696 74.929 22.661 1 2410300 + 33874 24612 22702 23119 39727 39727 -0.061522308213625365 LNSVQQAGRF 10 Unmodified _LNSVQQAGRF_ 0 0 0 REV__nc|ENSG00000144959|Q6PIU2-2|NCEH1 REV__nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2987670898438 2 560.298904 1118.58326 -0.31439 -0.00017615 0.11423 6.4003E-05 -0.20016 -0.00011215 560.2991676768864 29.912 0.16797 29.912 29.847 30.015 0 13 7 2 0 0 0 0.66569 1 15565 15565 6.7232 0 1 1465400 + 33875 20747 22703 23120 39728 39728 0.028707620777595366 LNTDEFLGVL 10 Unmodified _LNTDEFLGVL_ 0 0 0 REV__ENST00000401004.2_1:120904811-120905087:+|nuORF REV__ENST00000401004.2_1:120904811-120905087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7985229492188 2 560.797872 1119.58119 0.56373 0.00031614 1.0878 0.00061003 1.6515 0.00092617 560.7983866145304 74.647 0.26439 74.647 74.52 74.784 0 19 11 2 0 0 0 0.66569 1 41523 41523 6.7232 0.51738 1 1231100 + 33876 19856 22704 23121 39729 39729 0.026182885492971764 LNTLQYKKKI 10 Unmodified _LNTLQYKKKI_ 0 0 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.7303771972656 3 416.927329 1247.76016 NaN NaN NaN NaN NaN NaN NaN 17.914 1 15.327 14.827 15.827 -2.5866 0 0 0 1.0004 1 9406 9406 0.62683 0 1 33877 6524 22705 23122 39730 39730 0.14618797908042325 LNTWMNDFRF 10 Unmodified _LNTWMNDFRF_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.04345703125 2 672.313697 1342.61284 -0.021199 -1.4252E-05 -2.5381 -0.0017064 -2.5593 -0.0017206 672.3122163193649 94.409 0.23517 94.409 94.288 94.523 0 34 20 2 0 0 0 0.71276 1 52232 52232 1.4819 0 1 505340 33878 8362 22706 23123 39731 39731 -0.044760419684507724 LNTYVGPYG 9 Unmodified _LNTYVGPYG_ 0 0 0 REV__ENSG00000129437|ENST00000650543|KLK14 REV__ENSG00000129437|ENST00000650543|KLK14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2462158203125 2 492.245275 982.475997 NaN NaN NaN NaN NaN NaN NaN 83.264 1 82.767 82.267 83.267 -0.49751 0 0 0 0.76439 1 45580 45580 7.2892 1.5288 1 + 33879 19663 22707 23124 39732 39732 -0.01594207856464891 LNVETVLGL 9 Unmodified _LNVETVLGL_ 0 0 0 REV__nc|ENSG00000157600|Q5U3C3-2|TMEM164 REV__nc|ENSG00000157600|Q5U3C3-2|TMEM164 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2774353027344 2 479.2844 956.554247 0.38099 0.0001826 -0.58896 -0.00028228 -0.20797 -9.9679E-05 479.283997422818 70.046 1.5932 70.077 69.806 71.399 0.030914 178 75 5 0 0 0 0.5029 1 39069 39069 7.2892 0 1 339710000 + 33880 21393 22708 23125 39733 39733 0.0742322472875685 LNVGDVVM 8 Unmodified _LNVGDVVM_ 0 0 0 ENSG00000147854|ENST00000276893|UHRF2;ENST00000484159.5_1_9:6434093-6493966:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.439697265625 1 846.438966 845.431689 0.57593 0.00048749 -1.188 -0.0010056 -0.61207 -0.00051808 846.4382606367468 65.954 0.42364 59.778 59.541 59.965 -6.1757 47 24 3 0 0 0 0.17994 3 42752 42752;42866;42889 77.984 16.605 1 34983000 33881 5885 22709 23126 39734;39735;39736 39734 0.002790647257029377 LNVGDVVM 8 Unmodified _LNVGDVVM_ 0 0 0 ENSG00000147854|ENST00000276893|UHRF2;ENST00000484159.5_1_9:6434093-6493966:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7233581542969 2 423.723121 845.431689 0.96202 0.00040763 -0.64661 -0.00027399 0.31541 0.00013365 423.7229254901092 65.99 0.40112 59.814 59.576 59.977 -6.1757 35 23 2 0 0 0 0.57045 1 42859 42859 28.487 0 1 15939000 33882 5885 22709 23126 39737 39737 0.002790647257029377 LNVGSTAF 8 Unmodified _LNVGSTAF_ 0 0 0 nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF nc|ENSG00000114770|O15440-5|ABCC5 nc|ENSG00000114770|O15440-5|ABCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.7129211425781 2 404.713611 807.412668 -0.77761 -0.00031471 0.17492 7.0791E-05 -0.60269 -0.00024392 404.7135855456732 27.835 0.26483 27.835 27.7 27.965 0 21 12 2 0 0 0 0.5284 1 14343 14343 32.117 0 1 2738000 33883 3060 22710 23127 39738 39738 0.0012585142628722679 LNVLRKVSH 9 Unmodified _LNVLRKVSH_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8897399902344 3 355.889097 1064.64546 1.9091 0.00067942 0.089345 3.1797E-05 1.9984 0.00071122 355.8888655492654 37.698 0.29316 33.329 33.144 33.437 -4.3689 23 17 2 0 0 0 0.41742 1 22128 22128 7.609 0 1 10012000 33884 8362 22711 23128 39739 39739 0.11572533216735792 LNVRHLRLR 9 Unmodified _LNVRHLRLR_ 0 0 0 REV__nc|ENSG00000177595|Q9HB75-6|PIDD1 REV__nc|ENSG00000177595|Q9HB75-6|PIDD1 MSMS AL20221201_MKP_PDAC_01 4 588.8779296875 2 588.875448 1175.73634 NaN NaN NaN NaN NaN NaN NaN 106.02 1 99.843 99.343 100.34 -6.1757 0 0 0 0.85798 1 70991 70991 0.52476 0.066424 1 + 33885 22993 22712 23129 39740 39740 0.15550421984880813 LNVRHLRLR 9 Unmodified _LNVRHLRLR_ 0 0 0 REV__nc|ENSG00000177595|Q9HB75-6|PIDD1 REV__nc|ENSG00000177595|Q9HB75-6|PIDD1 MSMS AL20221201_MKP_PDAC_01 4 588.8775634765625 2 588.875448 1175.73634 NaN NaN NaN NaN NaN NaN NaN 106.37 1 100.19 99.694 100.69 -6.1757 0 0 0 0.85798 1 71204 71204 0.52476 0.066424 1 + 33886 22993 22712 23129 39741 39741 0.15550421984880813 LNVSWSKA 8 Unmodified _LNVSWSKA_ 0 0 0 REV__ENST00000485406.1_1_X:69510136-69510301:+|nuORF REV__ENST00000485406.1_1_X:69510136-69510301:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7488098144531 2 452.747985 903.481417 1.3284 0.00060141 0.26572 0.00012031 1.5941 0.00072172 452.74807437171654 35.771 0.48561 31.578 31.351 31.837 -4.1928 89 30 4 0 0 0 0.64853 1 20840 20840 21.747 0 1 77483000 + 33887 27779 22713 23130 39742 39742 0.02581515726001271 LNWREGPFGL 10 Unmodified _LNWREGPFGL_ 0 0 0 REV__ENST00000274680.8_1_6:5261815-5368788:+|nuORF REV__ENST00000274680.8_1_6:5261815-5368788:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.877197265625 3 396.876857 1187.60874 0.31727 0.00012592 0.61131 0.00024262 0.92859 0.00036854 396.8772590218782 2.9491 0.076193 0.46713 0.43051 0.50671 -2.482 60 31 3 0 0 0 0.68844 1 1519 1519 4.1895 0 1 5360900 + 33888 25165 22714 23131 39743 39743 0.022442366001769187 LNYANVKHQI 10 Unmodified _LNYANVKHQI_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3318481445312 2 600.330205 1198.64586 0.15846 9.5126E-05 -0.24644 -0.00014795 -0.087985 -5.282E-05 600.3300866662926 57.208 0.9474 51.18 50.548 51.496 -6.0275 82 54 2 0 0 0 0.2667 1 36763 36763 34.402 16.267 1 21645000 + 33889 23320 22715 23132 39744 39744 0.054479081459248846 LNYHLLTRF 9 Unmodified _LNYHLLTRF_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8894958496094 3 392.888986 1175.64513 0.91194 0.00035829 0.40336 0.00015848 1.3153 0.00051677 392.88907791765774 67.714 3.0039 61.538 59.74 62.743 -6.1757 390 172 3 0 0 0 0.21643 1 43957 43957 15.739 0 1 88874000 + 33890 21439 22716 23133 39745 39745 0.06433113496859733 LNYVRDAE 8 Unmodified _LNYVRDAE_ 0 0 0 nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4;ENST00000521187.1_1_6:112493743-112499389:-|nuORF nc|ENSG00000112769|Q16363-2|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 MSMS AL20221201_MKP_PDAC_01 4 490.2466125488281 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 102.77 1 96.595 96.095 97.095 -6.1757 0 0 0 0.97444 1 68948 68948 4.756 0.42677 1 33891 2919 22717 23134 39746 39746 -0.013039934875791914 LPAAAQDVY 9 Unmodified _LPAAAQDVY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.48486328125 1 947.483273 946.475997 0.2045 0.00019376 0.45212 0.00042838 0.65662 0.00062213 947.4837376882755 42.916 0.27037 42.916 42.756 43.026 0 30 13 3 0 0 0 0.0088174 2 23215 23215;23337 103.75 29.326 1 10622000 33892 7093 22718 23135 39747;39748 39747 0.0006179214351504925 LPAAAQDVY 9 Unmodified _LPAAAQDVY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2457275390625 2 474.245275 946.475997 0.83962 0.00039819 -0.70666 -0.00033513 0.13296 6.3056E-05 474.24497647194994 42.884 0.2499 42.884 42.756 43.006 0 38 12 4 0 0 0 0.013472 1 23223 23223 70.716 30.758 1 14579000 33893 7093 22718 23135 39749 39749 0.0006179214351504925 LPAAAQDVY 9 Unmodified _LPAAAQDVY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2464599609375 2 474.245275 946.475997 1.0562 0.00050092 0.45501 0.00021579 1.5112 0.0007167 474.2456682861849 50.066 0.41652 44.527 44.344 44.76 -5.5391 47 26 2 0 0 0 0.06187 2 31413 31273;31413 42.095 23.96 1 45948000 33894 7093 22718 23135 39750;39751 39751 0.0006179214351504925 LPAAAQDVY 9 Unmodified _LPAAAQDVY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 947.4824829101562 1 947.483273 946.475997 0.61396 0.00058171 0.1515 0.00014354 0.76546 0.00072526 947.4831450994188 50.078 0.34842 44.539 44.377 44.725 -5.5391 31 22 2 0 0 0 0.0010099 2 31317 31317;31481 139.54 54.187 1 13627000 33895 7093 22718 23135 39752;39753 39752 0.0006179214351504925 LPAAAQDVYY 10 Unmodified _LPAAAQDVYY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.23388671875 2 555.776939 1109.53933 1.0666 0.00059277 -0.59967 -0.00033328 0.4669 0.00025949 555.7768015846505 51.252 0.32639 51.252 51.085 51.412 0 48 14 4 0 0 0 0.19561 1 28348 28348 24.021 13.197 1 50760000 33896 7093 22719 23136 39754 39754 -0.01106267139243755 LPAAAQDVYY 10 Unmodified _LPAAAQDVYY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7766723632812 2 555.776939 1109.53933 0.46688 0.00025948 0.28985 0.00016109 0.75673 0.00042057 555.7770040691704 51.904 0.22369 51.471 51.346 51.569 -0.43367 25 11 3 0 0 0 0.16524 1 28002 28002 37.974 37.974 1 5426700 33897 7093 22719 23136 39755 39755 -0.01106267139243755 LPAAAQDVYY 10 Unmodified _LPAAAQDVYY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8590087890625 2 555.776939 1109.53933 0.089351 4.9659E-05 1.4734 0.00081888 1.5627 0.00086854 555.7771140109721 51.535 0.15668 51.481 51.401 51.558 -0.053871 14 7 3 0 0 0 0.22489 1 27886 27886 18.146 4.6385 1 1458900 33898 7093 22719 23136 39756 39756 -0.01106267139243755 LPAAAQDVYY 10 Unmodified _LPAAAQDVYY_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7786254882812 2 555.776939 1109.53933 1.2875 0.00071557 -0.013526 -7.5176E-06 1.274 0.00070806 555.7769531430566 59.161 0.52794 53.086 52.798 53.326 -6.0745 53 29 2 0 0 0 0.041224 2 37853 37853;37980 62.573 36.305 1 143280000 33899 7093 22719 23136 39757;39758 39757 -0.01106267139243755 LPAAARPHR 9 Unmodified _LPAAARPHR_ 0 0 0 ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 989.5831909179688 1 988.579908 987.572632 1.1612 0.0011479 -3.2628 -0.0032256 -2.1016 -0.0020776 988.5779545477874 100.25 0.19022 94.075 93.996 94.187 -6.1757 18 11 2 0 0 0 0.28047 1 67057 67057 18.135 4.6271 1 25360000 33900 11815 22720 23137 39759 39759 0.07834824213978209 LPAAAWHY 8 Unmodified _LPAAAWHY_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7379455566406 2 464.73742 927.460287 1.2102 0.00056241 -0.48867 -0.0002271 0.72149 0.0003353 464.73746745042695 53.915 0.28279 48.049 47.929 48.211 -5.8653 28 16 2 0 0 0 0.32738 1 34137 34137 52.334 18.147 1 12281000 33901 2029;13824 22721 23138 39760 39760 -0.006344495828784602 LPAAGRRA 8 Unmodified _LPAAGRRA_ 0 0 0 ENST00000586220.1_1_19:28284944-28285022:+|nuORF ENST00000586220.1_1_19:28284944-28285022:+|nuORF ENST00000586220.1_1_19:28284944-28285022:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.4881591796875 1 811.489696 810.48242 1.3318 0.0010807 -0.4283 -0.00034756 0.90348 0.00073316 811.4891510995521 87.236 0.41277 81.06 80.825 81.237 -6.1757 32 22 2 0 0 0 0.80044 1 57548 57548 6.3541 0 1 12784000 33902 15619 22722 23139 39761 39761 0.06959774885547176 LPAAGSLLF 9 Unmodified _LPAAGSLLF_ 0 0 0 REV__nc|ENSG00000114013|P42081-4|CD86 REV__nc|ENSG00000114013|P42081-4|CD86 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.764404296875 2 444.763104 887.511654 0.93425 0.00041552 0.26469 0.00011773 1.1989 0.00053325 444.7631919230363 54.524 0.28304 48.659 48.516 48.799 -5.8653 29 17 2 0 0 0 0.16226 1 34598 34598 26.884 7.6267 1 20634000 + 33903 18900 22723 23140 39762 39762 0.06339874391176181 LPAAGSLLF 9 Unmodified _LPAAGSLLF_ 0 0 0 REV__nc|ENSG00000114013|P42081-4|CD86 REV__nc|ENSG00000114013|P42081-4|CD86 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.763104 887.511654 0.28862 0.00012837 -0.52322 -0.00023271 -0.23459 -0.00010434 444.7628190192398 49.073 0.22289 49.073 48.952 49.174 0 0.1747 -0.00035545 NaN 26.884 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1910000 + 33904 18900 22723 23140 0.06339874391176181 LPAAGSLLF 9 Unmodified _LPAAGSLLF_ 0 0 0 REV__nc|ENSG00000114013|P42081-4|CD86 REV__nc|ENSG00000114013|P42081-4|CD86 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.763104 887.511654 0.53851 0.00023951 -0.27553 -0.00012255 0.26298 0.00011696 444.7630316453476 49.335 0.27891 48.963 48.799 49.078 -0.37171 0.064851 -0.00013512 NaN 26.884 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2902700 + 33905 18900 22723 23140 0.06339874391176181 LPAAGSLLF 9 Unmodified _LPAAGSLLF_ 0 0 0 REV__nc|ENSG00000114013|P42081-4|CD86 REV__nc|ENSG00000114013|P42081-4|CD86 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 444.763104 887.511654 0.93425 0.00041552 0.26469 0.00011773 1.1989 0.00053325 444.7631919230363 54.524 0.28304 48.659 48.516 48.799 -5.8653 -0.23955 0.00034542 NaN 26.884 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 20634000 + 33906 18900 22723 23140 0.06339874391176181 LPAAGVGDMVM 11 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ LPAAGVGDM(1)VM(1) LPAAGVGDM(89)VM(89) 0 0 2 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7570190429688 2 546.756835 1091.49912 0.63732 0.00034846 -0.87579 -0.00047885 -0.23847 -0.00013039 546.7567631392371 36.799 0.80797 36.799 36.33 37.138 0 124 39 6 0 0 0 0.00048187 1 19510 19510 88.904 67.157 1 102630000 33907 3871 22724 23141 39763 39763 686;687 -0.04297273125666834 LPAAGVGDMVM 11 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ LPAAGVGDM(1)VM(1) LPAAGVGDM(61)VM(61) 0 0 2 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7572631835938 2 546.756835 1091.49912 -0.37658 -0.0002059 0.66667 0.00036451 0.29009 0.00015861 546.7575566097056 37.145 0.34868 36.896 36.688 37.037 -0.2497 47 14 5 0 0 0 0.016068 1 19535 19535 61.357 39.611 1 8057100 33908 3871 22724 23141 39764 39764 686;687 -0.04297273125666834 LPAAGVGDMVM 11 2 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM(Oxidation (M))_ LPAAGVGDM(1)VM(1) LPAAGVGDM(46)VM(46) 0 0 2 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7571411132812 2 546.756835 1091.49912 0.55168 0.00030163 0.0031146 1.703E-06 0.55479 0.00030334 546.7570328085387 43.771 0.57978 39.006 38.693 39.273 -4.7648 85 36 3 0 0 0 0.072482 1 26738 26738 46.021 27.886 1 53944000 33909 3871 22724 23141 39765 39765 686;687 -0.04297273125666834 LPAAGVGDMVM 11 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ LPAAGVGDM(0.5)VM(0.5) LPAAGVGDM(0)VM(0) 0 0 1 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7603149414062 2 538.759378 1075.5042 0.28854 0.00015545 -0.52697 -0.00028391 -0.23843 -0.00012846 538.7595034719458 50.931 0.32233 50.517 50.358 50.68 -0.41351 45 15 4 0 0 0 0.019693 1 27417 27417 57.471 40.529 2 9101900 33910 3871 22724 23142 39766 39766 686;687 -0.03052969263058003 LPAAGVGDMVM 11 Oxidation (M) _LPAAGVGDMVM(Oxidation (M))_ LPAAGVGDM(0.007)VM(0.993) LPAAGVGDM(-21)VM(21) 0 0 1 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1077.602661132812 1 1076.51148 1075.5042 1.2872 0.0013857 -0.49123 -0.00052881 0.79601 0.00085691 1076.5109535870356 58.788 0.32382 52.713 52.527 52.851 -6.0745 22 17 2 0 0 0 4.5763E-06 1 37637 37637 96.285 73.832 2 11457000 33911 3871 22724 23142 39767 39767 686;687 -0.03052969263058003 LPAAGVGDMVM 11 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ LPAAGVGDM(0.5)VM(0.5) LPAAGVGDM(0)VM(0) 0 0 1 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7598266601562 2 538.759378 1075.5042 1.3355 0.00071951 -1.0281 -0.00055389 0.30741 0.00016562 538.7592555172718 58.786 0.5659 52.711 52.387 52.953 -6.0745 104 31 4 0 0 0 0.019693 2 37770 37642;37770 57.471 40.529 2 203890000 33912 3871 22724 23142 39768;39769 39769 686;687 -0.03052969263058003 LPAAGVGDMVM 11 Oxidation (M) _LPAAGVGDM(Oxidation (M))VM_ 0 0 1 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 538.759378 1075.5042 0.93278 0.00050254 -0.48193 -0.00025964 0.45085 0.0002429 538.7590581156019 50.566 0.20017 50.512 50.408 50.608 -0.053871 -0.0025316 4.1614E-05 NaN 57.471 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 840430 33913 3871 22724 23142 686;687 -0.03052969263058003 LPAAGVGDMVM 11 Unmodified _LPAAGVGDMVM_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000577760.1_1_17:37008851-37009031:-|nuORF;ENST00000584912.5_1_17:37008851-37009963:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.263427734375 2 530.76192 1059.50929 0.83056 0.00044083 -0.018018 -9.5635E-06 0.81254 0.00043127 530.762207855344 73.399 1.1336 67.223 66.93 68.064 -6.1757 125 55 4 0 0 0 0.0055162 3 47902 47902;48027;48141 74.423 47.539 1 53471000 33914 3871 22724 23143 39770;39771;39772 39770 -0.018086654004264346 LPAALLSRF 9 Unmodified _LPAALLSRF_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3034973144531 2 494.302927 986.591301 1.206 0.00059614 0.21366 0.00010561 1.4197 0.00070175 494.302702506231 70.722 0.41047 70.758 70.526 70.936 0.035507 42 18 3 0 0 0 0.05483 1 38911 38911 43.772 7.7282 1 4035000 33915 7502 22725 23144 39773 39773 0.09746941065179726 LPAALLSRF 9 Unmodified _LPAALLSRF_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MSMS AL20221201_MKP_PDAC_01 4 494.3040771484375 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 86.925 1 80.75 80.25 81.25 -6.1757 0 0 0 0.10661 1 57306 57306 41.956 5.9114 1 33916 7502 22725 23144 39774 39774 0.09746941065179726 LPAALSWS 8 Unmodified _LPAALSWS_ 0 0 0 REV__ENST00000377811.3_1_X:47001834-47003879:-|nuORF REV__ENST00000377811.3_1_X:47001834-47003879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.45703125 1 844.45633 843.449054 -0.042562 -3.5942E-05 0.57455 0.00048518 0.53198 0.00044924 844.456934204723 88.34 0.35366 87.835 87.602 87.956 -0.50423 26 15 2 0 0 0 0.41521 1 48251 48251 42.968 16.627 1 1429400 + 33917 25173 22726 23145 39775 39775 0.021067283229854183 LPAAPCRAL 9 Carbamidomethyl (C) _LPAAPC(Carbamidomethyl (C))RAL_ LPAAPC(1)RAL LPAAPC(60)RAL 0 1 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7716064453125 2 484.770937 967.527321 0.99962 0.00048459 -0.29545 -0.00014322 0.70418 0.00034136 484.7709139504106 42.844 0.40457 38.16 37.934 38.339 -4.6846 62 25 3 0 0 0 0.023164 1 25946 25946 60.39 9.5345 1 67366000 33918 7189 22727 23146 39776 39776 704 0.04225837636579399 LPAAPPAPEF 10 Unmodified _LPAAPPAPEF_ 0 0 0 ENSG00000173917|ENST00000330070|HOXB2 ENSG00000173917|ENST00000330070|HOXB2 ENSG00000173917|ENST00000330070|HOXB2 MSMS AL20221201_MKP_PDAC_01 4 505.27001953125 2 505.271293 1008.52803 NaN NaN NaN NaN NaN NaN NaN 89.538 1 83.362 82.862 83.862 -6.1757 0 0 0 0.38297 1 59109 59109 32.305 3.2239 1 33919 8376 22728 23147 39777 39777 0.02410955557274974 LPAASVAGRQF 11 Unmodified _LPAASVAGRQF_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8112182617188 2 558.811648 1115.60874 0.92691 0.00051797 -0.015815 -8.8375E-06 0.91109 0.00050913 558.811507091818 42.793 0.25397 42.784 42.665 42.919 -0.0088196 18 11 2 0 0 0 1.3287E-06 1 22903 22903 103.42 55.671 1 6296800 33920 4867 22729 23148 39778 39778 0.05556236600182274 LPAASVAGRQF 11 Unmodified _LPAASVAGRQF_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.812255859375 2 558.811648 1115.60874 1.1036 0.00061669 -0.27408 -0.00015316 0.8295 0.00046354 558.8114363995962 48.596 0.34103 43.2 42.996 43.337 -5.3961 35 20 2 0 0 0 0.038431 1 30336 30336 53.404 17.36 1 45848000 33921 4867 22729 23148 39779 39779 0.05556236600182274 LPAATFQVTY 10 Unmodified _LPAATFQVTY_ 0 0 0 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3132934570312 2 555.795132 1109.57571 0.55018 0.00030579 0.89789 0.00049904 1.4481 0.00080483 555.795738427126 67.047 0.31924 66.564 66.355 66.674 -0.48323 28 14 3 0 0 0 0.19561 1 36586 36586 30.637 8.8899 1 5271300 33922 2016 22730 23149 39780 39780 0.0253060975749122 LPAATFQVTY 10 Unmodified _LPAATFQVTY_ 0 0 0 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7957153320312 2 555.795132 1109.57571 0.98244 0.00054604 -1.8534 -0.0010301 -0.87099 -0.00048409 555.7942170201936 73.982 0.47175 67.807 67.548 68.02 -6.1757 55 23 3 0 0 0 0.02987 2 48268 48268;48384 68.081 37.856 1 44117000 33923 2016 22730 23149 39781;39782 39781 0.0253060975749122 LPAATLLVI 9 Unmodified _LPAATLLVI_ 0 0 0 REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 910.6025390625 1 910.597181 909.589904 2.7817 0.002533 2.2127 0.0020149 4.9944 0.0045479 910.5990339128608 99.956 0.16267 99.92 99.799 99.962 -0.036301 11 5 3 0 0 0 0.012158 1 55508 55508 74.396 7.361 1 5724900 + 33924 24826 22731 23150 39783 39783 0.1314930697640193 LPAATLLVI 9 Unmodified _LPAATLLVI_ 0 0 0 REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2581787109375 2 455.802229 909.589904 1.2431 0.00056663 -0.83985 -0.00038281 0.40329 0.00018382 455.8019181143352 101.17 0.12318 94.997 94.923 95.046 -6.1757 10 7 2 0 0 0 0.0089973 2 67831 67831;67845 86.121 7.6766 1 45132000 + 33925 24826 22731 23150 39784;39785 39784 0.1314930697640193 LPAATLLVI 9 Unmodified _LPAATLLVI_ 0 0 0 REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.2581787109375 2 455.802229 909.589904 1.2431 0.00056663 -0.83985 -0.00038281 0.40329 0.00018382 455.8019181143352 101.17 0.12318 94.997 94.923 95.046 -6.1757 10 7 2 0 0 0 0.019979 1 67831 67831 86.121 7.6766 1 45132000 + 33926 24826 22731 23150 39786 39786 0.1314930697640193 LPAATLLVI 9 Unmodified _LPAATLLVI_ 0 0 0 REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF REV__ENST00000234313.7_1_2:68623094-68623172:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 910.597181 909.589904 2.7817 0.002533 2.2127 0.0020149 4.9944 0.0045479 910.5990339128608 99.956 0.16267 99.92 99.799 99.962 -0.036301 0 0 NaN 74.396 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 5724900 + 33927 24826 22731 23150 0.1314930697640193 LPAAVQPQSF 10 Unmodified _LPAAVQPQSF_ 0 0 0 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.287353515625 2 529.287474 1056.5604 -0.02217 -1.1734E-05 0.52293 0.00027678 0.50076 0.00026505 529.2866320738036 54.72 0.15907 54.253 54.143 54.302 -0.46664 12 7 2 0 0 0 0.2178 1 29647 29647 32.305 11.852 1 1655100 33928 6763 22732 23151 39787 39787 0.034377429602727716 LPAAYDEGH 9 Unmodified _LPAAYDEGH_ 0 0 0 REV__nc|ENSG00000166589|O75309-3|CDH16 REV__nc|ENSG00000166589|O75309-3|CDH16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.724609375 2 486.724707 971.43486 0.4059 0.00019756 -1.0039 -0.0004886 -0.59797 -0.00029105 486.7242491175223 58.075 0.75067 58.075 57.716 58.467 0 54 30 2 0 0 0 0.41742 1 32344 32344 11.64 0.81637 1 4870900 + 33929 22134 22733 23152 39788 39788 -0.051999688959540435 LPAAYKSIL 9 Unmodified _LPAAYKSIL_ 0 0 0 REV__ENSG00000164309|ENST00000446378|CMYA5 REV__ENSG00000164309|ENST00000446378|CMYA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.297119140625 2 488.29731 974.580068 0.64542 0.00031516 -0.45145 -0.00022044 0.19396 9.4713E-05 488.2970036395421 64.726 0.30028 64.241 64.102 64.403 -0.48512 35 13 3 0 0 0 0.06187 1 35296 35296 42.095 5.9675 1 4389000 + 33930 21904 22734 23153 39789 39789 0.0917611897103825 LPAAYKSIL 9 Unmodified _LPAAYKSIL_ 0 0 0 REV__ENSG00000164309|ENST00000446378|CMYA5 REV__ENSG00000164309|ENST00000446378|CMYA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.29731 974.580068 0.64542 0.00031516 -0.45145 -0.00022044 0.19396 9.4713E-05 488.2970036395421 64.726 0.30028 64.241 64.102 64.403 -0.48512 -0.020948 -2.1097E-05 NaN 42.095 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4389000 + 33931 21904 22734 23153 0.0917611897103825 LPACIKLIL 9 Carbamidomethyl (C) _LPAC(Carbamidomethyl (C))IKLIL_ LPAC(1)IKLIL LPAC(44)IKLIL 0 1 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8284301757812 2 520.830463 1039.64637 NaN NaN NaN NaN NaN NaN NaN 80.281 1 80.338 79.838 80.838 0.057587 0 0 0 0.096036 1 44371 44371 44.407 17.523 1 33932 1477 22735 23154 39790 39790 140 0.12813611541423597 LPACIKLIL 9 Carbamidomethyl (C) _LPAC(Carbamidomethyl (C))IKLIL_ LPAC(1)IKLIL LPAC(82)IKLIL 0 1 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.832275390625 2 520.830463 1039.64637 1.3261 0.00069067 -0.019133 -9.9652E-06 1.307 0.00068071 520.8305300497778 97.087 0.23788 90.911 90.807 91.044 -6.1757 20 13 2 0 0 0 0.0095811 1 64339 64339 81.613 29.345 1 28358000 33933 1477 22735 23154 39791 39791 140 0.12813611541423597 LPADDYTSL 9 Unmodified _LPADDYTSL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.740478515625 2 497.740022 993.465492 1.5429 0.00076797 0.42887 0.00021347 1.9718 0.00098144 497.73965388545855 58.904 0.43145 52.83 52.58 53.011 -6.0745 53 23 3 0 0 0 0.2143 1 37737 37737 21.747 2.4897 1 21685000 33934 2100 22736 23155 39792 39792 -0.03150235301563953 LPADIQAQF 9 Unmodified _LPADIQAQF_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7664489746094 2 501.766374 1001.5182 0.54882 0.00027538 0.6527 0.0003275 1.2015 0.00060288 501.7666944212375 61.218 0.45802 61.218 60.975 61.433 0 63 19 4 0 0 0 0.10734 1 34151 34151 32.305 5.4218 1 8202600 33935 2410 22737 23156 39793 39793 0.01749767551905279 LPADIQAQF 9 Unmodified _LPADIQAQF_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7663879394531 2 501.766374 1001.5182 -0.024786 -1.2437E-05 0.094614 4.7474E-05 0.069829 3.5038E-05 501.7664586726594 61.802 0.39171 61.314 61.118 61.51 -0.48764 49 18 4 0 0 0 0.039985 2 33720 33621;33720 49.933 23.049 1 11619000 33936 2410 22737 23156 39794;39795 39795 0.01749767551905279 LPADIQAQF 9 Unmodified _LPADIQAQF_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7678833007812 2 501.766374 1001.5182 1.0609 0.00053233 0.13905 6.9772E-05 1.2 0.0006021 501.76655660126215 68.815 0.50012 62.639 62.383 62.883 -6.1757 62 27 3 0 0 0 0.015445 2 44971 44851;44971 68.081 25.986 1 54322000 33937 2410 22737 23156 39796;39797 39797 0.01749767551905279 LPADIRIPDGY 11 Unmodified _LPADIRIPDGY_ 0 0 0 ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17 ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.3296508789062 2 615.32987 1228.64519 0.70675 0.00043488 -0.33528 -0.00020631 0.37146 0.00022857 615.3296074836916 62.704 0.20613 62.218 62.1 62.306 -0.48617 18 9 3 0 0 0 0.083469 1 34172 34172 44.392 21.734 1 3944200 33938 819 22738 23157 39798 39798 0.04001068706224942 LPADIRIPDGY 11 Unmodified _LPADIRIPDGY_ 0 0 0 ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17 ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.329833984375 2 615.32987 1228.64519 0.5641 0.00034711 0.42159 0.00025942 0.98569 0.00060653 615.3303292368576 69.658 0.31701 63.482 63.41 63.727 -6.1757 23 16 2 0 0 0 5.0677E-15 1 45540 45540 135.72 86.164 1 16557000 33939 819 22738 23157 39799 39799 0.04001068706224942 LPADISTGIYY 11 Unmodified _LPADISTGIYY_ 0 0 0 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8111572265625 2 606.810979 1211.6074 0.10585 6.4233E-05 0.47453 0.00028795 0.58038 0.00035218 606.8113455804149 69.138 0.40749 68.657 68.465 68.873 -0.48071 45 17 3 0 0 0 0.47137 1 37755 37755 29.082 8.667 1 3384100 33940 4661 22739 23158 39800 39800 0.010065577207797105 LPADISTGIYY 11 Unmodified _LPADISTGIYY_ 0 0 0 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.7696533203125 2 606.810979 1211.6074 -0.032479 -1.9708E-05 -0.65799 -0.00039927 -0.69047 -0.00041898 606.8108115155144 77.146 0.42597 70.971 70.759 71.185 -6.1757 56 24 3 0 0 0 0.15518 1 50418 50418 27.629 0 1 29829000 33941 4661 22739 23158 39801 39801 0.010065577207797105 LPADITEDEF 10 Unmodified _LPADITEDEF_ 0 0 0 nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ nc|ENSG00000116560|P23246-2|SFPQ nc|ENSG00000116560|P23246-2|SFPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2689208984375 2 575.269144 1148.52373 0.40127 0.00023084 0.74005 0.00042573 1.1413 0.00065657 575.269477031299 61.531 0.43087 61.531 61.321 61.751 0 50 19 4 0 0 0 0.1028 2 34350 34244;34350 46.021 25.567 1 6118300 33942 3228 22740 23159 39802;39803 39803 -0.04458598446967699 LPADQASVM 9 Unmodified _LPADQASVM_ 0 0 0 REV__nc|ENSG00000170776|Q12802-4|AKAP13 REV__nc|ENSG00000170776|Q12802-4|AKAP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2307434082031 2 466.23131 930.448068 1.0001 0.00046629 -0.20795 -9.6954E-05 0.79218 0.00036934 466.23117893930197 50.033 0.46154 44.494 44.299 44.76 -5.5391 50 29 2 0 0 0 0.095405 1 31288 31288 34.102 1.9855 1 32232000 + 33943 22508 22741 23160 39804 39804 -0.019938541082183292 LPADVFVEF 9 Unmodified _LPADVFVEF_ 0 0 0 REV__ENSG00000138801|ENST00000265174|PAPSS1 REV__ENSG00000138801|ENST00000265174|PAPSS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2713012695312 2 518.771126 1035.5277 0.34342 0.00017815 -0.96688 -0.00050159 -0.62347 -0.00032344 518.7707011035894 63.705 0.3416 63.705 63.482 63.824 0 25 14 2 0 0 0 0.19613 1 35450 35450 12.532 3.1841 1 1202200 + 33944 20371 22742 23161 39805 39805 0.011355358374203206 LPADVQTAF 9 Unmodified _LPADVQTAF_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.500732421875 1 961.498923 960.491647 0.036445 3.5042E-05 -0.31618 -0.000304 -0.27973 -0.00026896 961.4986525030545 56.694 0.38188 56.694 56.495 56.877 0 25 16 2 0 0 0 0.010611 2 31571 31468;31571 78.728 33.028 1 3417600 33945 3803 22743 23162 39806;39807 39807 0.00982078660570096 LPADVQTAF 9 Unmodified _LPADVQTAF_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2537841796875 2 481.2531 960.491647 0.24222 0.00011657 0.40453 0.00019468 0.64675 0.00031125 481.2532394381221 56.706 0.40263 56.706 56.474 56.877 0 54 17 4 0 0 0 0.070838 2 31475 31475;31588 39.957 18.211 1 8945100 33946 3803 22743 23162 39808;39809 39808 0.00982078660570096 LPADVQTAF 9 Unmodified _LPADVQTAF_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2539672851562 2 481.2531 960.491647 0.6208 0.00029876 0.22214 0.00010691 0.84295 0.00040567 481.25324120459356 57.264 0.31913 56.774 56.645 56.964 -0.48974 22 14 2 0 0 0 0.070838 1 31111 31111 39.957 14.558 1 1892700 33947 3803 22743 23162 39810 39810 0.00982078660570096 LPADVQTAF 9 Unmodified _LPADVQTAF_ 0 0 0 ENSG00000124587|ENST00000304611|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;nc|ENSG00000124587|Q13608-2|PEX6 ENSG00000124587|ENST00000304611|PEX6 ENSG00000124587|ENST00000304611|PEX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.254638671875 2 481.2531 960.491647 1.103 0.00053081 1.3235 0.00063696 2.4265 0.0011678 481.2538346814148 64.808 0.48631 58.632 58.431 58.917 -6.1757 60 26 3 0 0 0 0.1773 1 42134 42134 25.399 0 1 54384000 33948 3803 22743 23162 39811 39811 0.00982078660570096 LPADVSPINY 10 Unmodified _LPADVSPINY_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.78564453125 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 58.508 1 58.508 58.008 59.008 0 0 0 0 0.14312 1 32579 32579 65.235 44.781 1 33949 5311 22744 23163 39812 39812 0.014700193778026005 LPADVSPINY 10 Unmodified _LPADVSPINY_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.78515625 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 58.696 1 58.696 58.196 59.196 0 0 0 0 0.18903 1 32685 32685 52.268 34.133 1 33950 5311 22744 23163 39813 39813 0.014700193778026005 LPADVSPINY 10 Unmodified _LPADVSPINY_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20221201_MKP_PDAC_01 4 544.7859497070312 2 544.784764 1087.55498 NaN NaN NaN NaN NaN NaN NaN 66.838 1 60.662 60.162 61.162 -6.1757 0 0 0 0.18903 1 43499 43499 52.268 28.058 1 33951 5311 22744 23163 39814 39814 0.014700193778026005 LPAEAVEAA 9 Unmodified _LPAEAVEAA_ 0 0 0 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.4591674804688 1 870.456724 869.449448 0.83211 0.00072431 0.19619 0.00017078 1.0283 0.00089509 870.4567471927096 42.843 0.32945 38.158 37.994 38.323 -4.6846 34 20 2 0 0 0 0.0077963 2 26019 25875;26019 109.63 42.285 1 12066000 33952 4241 22745 23164 39815;39816 39816 0.009501032521825437 LPAEDLLLY 9 Unmodified _LPAEDLLLY_ 0 0 0 ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB ENST00000576723.5_1_17:7843028-7852016:+|nuORF ENST00000576723.5_1_17:7843028-7852016:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.792724609375 2 523.792058 1045.56956 NaN NaN NaN NaN NaN NaN NaN 85.295 1 85.295 84.795 85.795 0 0 0 0 0.82739 1 47273 47273 4.3292 0 1 33953 7942 22746 23165 39817 39817 0.04860091525961252 LPAEEAPAL 9 Unmodified _LPAEEAPAL_ 0 0 0 ENST00000493307.1_1_7:150020415-150021458:+|nuORF;ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF ENST00000493307.1_1_7:150020415-150021458:+|nuORF ENST00000493307.1_1_7:150020415-150021458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4872436523438 1 910.488024 909.480748 0.43339 0.00039459 0.08865 8.0715E-05 0.52204 0.00047531 910.4878991333238 49.522 0.25595 49.522 49.373 49.629 0 18 10 2 0 0 0 0.0086179 1 27229 27229 89.427 51.276 1 2265600 33954 11792 22747 23166 39818 39818 0.02238676286287955 LPAEEAPAL 9 Unmodified _LPAEEAPAL_ 0 0 0 ENST00000493307.1_1_7:150020415-150021458:+|nuORF;ENST00000323078.7_1_7:150020415-150033884:+|nuORF;ENST00000463441.5_1_7:150020319-150023055:+|nuORF ENST00000493307.1_1_7:150020415-150021458:+|nuORF ENST00000493307.1_1_7:150020415-150021458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7480773925781 2 455.74765 909.480748 0.85589 0.00039007 0.085357 3.8901E-05 0.94124 0.00042897 455.74785183891254 49.514 0.31892 49.514 49.352 49.671 0 26 13 3 0 0 0 0.013472 1 27246 27246 70.716 36.613 1 4953200 33955 11792 22747 23166 39819 39819 0.02238676286287955 LPAEEKAPVSY 11 Unmodified _LPAEEKAPVSY_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.315673828125 2 602.316428 1202.6183 0.15108 9.0999E-05 -0.87597 -0.00052761 -0.72489 -0.00043661 602.817568509065 36.178 0.1536 36.178 36.095 36.249 0 11 7 2 0 0 0 0.42115 1 19194 19194 30.703 16.298 1 3203400 33956 9713 22748 23167 39820 39820 0.02509960095039787 LPAEFPDKVF 10 Unmodified _LPAEFPDKVF_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000483608.1_1_2:148705613-148710070:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8089599609375 2 581.810782 1161.60701 0.37293 0.00021698 -0.6296 -0.00036631 -0.25666 -0.00014933 581.8103443656274 67.18 0.29779 66.698 66.591 66.889 -0.48218 22 13 2 0 0 0 0.091475 1 36683 36683 63.227 28.826 1 5374200 33957 3178 22749 23168 39821 39821 0.03267182791569212 LPAEFPDKVF 10 Unmodified _LPAEFPDKVF_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;nc|ENSG00000115947|O43929-2|ORC4;nc|ENSG00000115947|O43929-3|ORC4;ENST00000483608.1_1_2:148705613-148710070:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8115234375 2 581.810782 1161.60701 1.031 0.00059987 -0.88718 -0.00051617 0.14386 8.3696E-05 581.8111219187607 74.661 0.21112 68.486 68.376 68.587 -6.1757 14 10 2 0 0 0 0.13206 1 48858 48858 55.235 31.214 1 8679500 33958 3178 22749 23168 39822 39822 0.03267182791569212 LPAEGGAFY 9 Unmodified _LPAEGGAFY_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.4440307617188 1 924.44616 923.438883 0.37893 0.0003503 -3.156 -0.0029176 -2.7771 -0.0025673 924.4431688343988 51.64 0.10658 51.64 51.583 51.689 0 7 4 2 0 0 0 0.070838 1 28528 28528 39.957 21.811 1 853100 33959 4143 22750 23169 39823 39823 -0.025898794022396032 LPAEHQFSF 9 Unmodified _LPAEHQFSF_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2645874023438 2 538.263999 1074.51345 0.18666 0.00010047 2.1412 0.0011525 2.3279 0.001253 538.2648762845001 51.748 0.22139 51.748 51.642 51.864 0 16 9 2 0 0 0 0.13231 1 28622 28622 29.841 5.1667 1 2430700 33960 788 22751 23170 39824 39824 -0.020831165908703042 LPAEHQFSF 9 Unmodified _LPAEHQFSF_ 0 0 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2645263671875 2 538.263999 1074.51345 0.45311 0.0002439 -0.091625 -4.9319E-05 0.36149 0.00019458 538.2648362666826 52.327 0.39439 51.894 51.59 51.985 -0.43367 48 19 4 0 0 0 0.029718 1 28221 28221 55.503 11.644 1 13807000 33961 788 22751 23170 39825 39825 -0.020831165908703042 LPAEKPPA 8 Unmodified _LPAEKPPA_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 822.4754028320312 1 822.47198 821.464704 0.22487 0.00018495 1.0871 0.00089412 1.312 0.0010791 822.4723534437462 82.114 0.29861 81.619 81.443 81.742 -0.4952 17 11 2 0 0 0 0.67481 1 44922 44922 19.439 0 1 714550 33962 1590 22752 23171 39826 39826 0.046830148400431426 LPAEQFQFL 9 Unmodified _LPAEQFQFL_ 0 0 0 ENST00000557275.5_1_14:95875019-95875331:-|nuORF ENST00000557275.5_1_14:95875019-95875331:-|nuORF ENST00000557275.5_1_14:95875019-95875331:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.2969360351562 2 546.78985 1091.56515 0.79036 0.00043216 0.71102 0.00038878 1.5014 0.00082094 547.2941112230268 39.458 0.23343 35.007 34.858 35.091 -4.4509 17 13 2 0 0 0 0.1176 1 23447 23447 36.127 3.3413 1 10449000 33963 15256 22753 23172 39827 39827 0.023026271030403223 LPAETIKDLM 10 Oxidation (M) _LPAETIKDLM(Oxidation (M))_ LPAETIKDLM(1) LPAETIKDLM(50) 0 0 1 ENST00000551706.1_1_12:58144639-58145133:-|nuORF;ENSG00000135446|ENST00000257904|CDK4 ENST00000551706.1_1_12:58144639-58145133:-|nuORF ENST00000551706.1_1_12:58144639-58145133:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8076171875 2 573.807382 1145.60021 NaN NaN NaN NaN NaN NaN NaN 44.475 1 44.475 43.975 44.975 0 0 0 0 0.12115 1 24199 24199 49.527 31.392 1 33964 4707 22754 23173 39828 39828 853 0.033235018486720946 LPAETLQEL 9 Unmodified _LPAETLQEL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2797241210938 2 507.279315 1012.54408 0.68756 0.00034879 -0.26867 -0.00013629 0.41889 0.0002125 507.27937036955353 60.812 0.32825 60.812 60.625 60.953 0 28 13 3 0 0 0 0.047196 1 33878 33878 46.021 4.1813 1 2451900 33965 3289 22755 23174 39829 39829 0.03830617003529824 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7684936523438 2 478.768583 955.522613 0.32339 0.00015483 0.12146 5.8149E-05 0.44485 0.00021298 478.7685899535846 75.417 0.46063 75.417 75.186 75.647 0 66 19 5 0 0 0 0.010877 2 41981 41884;41981 77.984 21.344 1 7845800 33966 3534 22756 23175 39830;39831 39831 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.5308227539062 1 956.529889 955.522613 -0.037798 -3.6155E-05 0.48385 0.00046282 0.44605 0.00042666 956.5301555293179 75.382 0.36582 75.382 75.205 75.571 0 33 15 3 0 0 0 0.0095811 2 41894 41894;41992 81.613 26.84 1 2840700 33967 3534 22756 23175 39832;39833 39832 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5341796875 1 956.529889 955.522613 0.41532 0.00039727 1.226 0.0011727 1.6413 0.00157 956.5315139735209 75.845 0.24983 75.368 75.255 75.505 -0.47714 12 10 2 0 0 0 0.06187 1 41531 41531 42.095 20.348 1 592590 33968 3534 22756 23175 39834 39834 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7697143554688 2 478.768583 955.522613 0.60795 0.00029107 -0.81167 -0.0003886 -0.20372 -9.7533E-05 478.7686054110679 75.905 0.38193 75.428 75.169 75.551 -0.47713 28 16 3 0 0 0 0.14602 1 41579 41579 28.487 6.7402 1 1746400 33969 3534 22756 23175 39835 39835 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.5302124023438 1 956.529889 955.522613 0.82996 0.00079389 -0.72285 -0.00069142 0.10712 0.00010246 956.5291216399133 83.393 0.35768 77.217 77.045 77.403 -6.1757 27 18 2 0 0 0 2.7377E-10 2 54786 54786;54935 171.47 63.47 1 6792700 33970 3534 22756 23175 39836;39837 39836 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MSMS AL20221201_MKP_PDAC_01 4 478.7688598632812 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 83.256 1 77.08 76.58 77.58 -6.1757 0 0 0 0.011967 1 54743 54743 89.427 31.955 1 33971 3534 22756 23175 39838 39838 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MSMS AL20221201_MKP_PDAC_01 4 478.7685852050781 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 83.439 1 77.263 76.763 77.763 -6.1757 0 0 0 0.020354 1 54868 54868 77.984 25.716 1 33972 3534 22756 23175 39839 39839 0.04307231974826209 LPAEVLDSL 9 Unmodified _LPAEVLDSL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MSMS AL20221201_MKP_PDAC_01 4 478.7686157226562 2 478.768583 955.522613 NaN NaN NaN NaN NaN NaN NaN 83.637 1 77.461 76.961 77.961 -6.1757 0 0 0 0.12337 1 55005 55005 39.957 5.5556 1 33973 3534 22756 23175 39840 39840 0.04307231974826209 LPAEVWEK 8 Unmodified _LPAEVWEK_ 0 0 0 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 ENSG00000188984|ENST00000359318|AADACL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.5222778320312 1 971.519659 970.512382 0.22621 0.00021977 0.96596 0.00093845 1.1922 0.0011582 971.5207460393455 72.447 0.27667 72.447 72.334 72.611 0 17 10 2 0 0 0 0.79783 1 40326 40326 7.9102 0.62092 1 861040 33974 9712 22757 23176 39841 39841 0.025946690402406603 LPAEYATHF 9 Unmodified _LPAEYATHF_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.78759765625 2 524.758549 1047.50255 0.48283 0.00025337 0.016955 8.8971E-06 0.49979 0.00026227 524.7584427755842 45.667 0.15913 45.667 45.586 45.745 0 14 7 2 0 0 0 0.13712 1 24943 24943 23.148 12.965 1 5864500 33975 3672 22758 23177 39842 39842 -0.019305189651504406 LPAFLDNHNY 10 Unmodified _LPAFLDNHNY_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2809448242188 2 602.293288 1202.57202 NaN NaN NaN NaN NaN NaN NaN 58.853 1 58.853 58.353 59.353 0 0 0 0 0.55063 1 32777 32777 23.79 9.8837 1 33976 7096 22759 23178 39843 39843 -0.021160600163966592 LPAFLDNHNY 10 Unmodified _LPAFLDNHNY_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2935180664062 2 602.293288 1202.57202 0.3216 0.0001937 0.58068 0.00034974 0.90229 0.00054344 602.2936345821544 59.471 0.37885 58.98 58.792 59.171 -0.49079 55 17 5 0 0 0 4.0285E-07 2 32413 32308;32413 137.42 101.3 1 17704000 33977 7096 22759 23178 39844;39845 39845 -0.021160600163966592 LPAFLDNHNY 10 Unmodified _LPAFLDNHNY_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.2926635742188 2 602.293288 1202.57202 0.27405 0.00016506 0.4508 0.00027151 0.72485 0.00043657 602.2930659897479 59.131 0.24445 59.071 58.922 59.166 -0.060722 27 11 3 0 0 0 0.022967 1 32204 32204 72.968 50.232 1 2693900 33978 7096 22759 23178 39846 39846 -0.021160600163966592 LPAFLDNHNY 10 Unmodified _LPAFLDNHNY_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.293212890625 2 602.293288 1202.57202 0.070942 4.2728E-05 0.69459 0.00041835 0.76553 0.00046107 602.2936613840867 65.014 0.87379 58.839 58.557 59.43 -6.1757 118 48 3 0 0 0 3.3984E-08 4 42343 42057;42202;42343;42469 148.27 104.41 1 61908000 33979 7096 22759 23178 39847;39848;39849;39850 39849 -0.021160600163966592 LPAFSALRS 9 Unmodified _LPAFSALRS_ 0 0 0 ENST00000381103.6_1_5:61602150-61602300:+|nuORF ENST00000381103.6_1_5:61602150-61602300:+|nuORF ENST00000381103.6_1_5:61602150-61602300:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2775573730469 2 481.276909 960.539266 0.53554 0.00025775 0.77668 0.0003738 1.3122 0.00063154 481.27719511802263 49.222 0.2655 49.179 49.07 49.336 -0.04369 16 12 2 0 0 0 0.40476 1 26611 26611 12.241 0 1 1115900 33980 12613 22760 23179 39851 39851 0.057417776514284924 LPAFVFIGL 9 Unmodified _LPAFVFIGL_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.5790405273438 1 976.586616 975.57934 0.62142 0.00060687 -3.0287 -0.0029578 -2.4073 -0.0023509 976.5825452118386 102.13 0.085617 95.959 95.918 96.003 -6.1757 8 3 3 0 0 0 0.047696 1 68556 68556 45.75 9.2838 1 6146900 33981 7926 22761 23180 39852 39852 0.09057324321986471 LPAGEYHKVY 10 Unmodified _LPAGEYHKVY_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8731079101562 3 392.873113 1175.59751 -0.61881 -0.00024312 1.008 0.00039603 0.38921 0.00015291 392.8734605108774 26.822 0.25151 26.822 26.679 26.93 0 19 11 2 0 0 0 0.34249 1 13779 13779 21.799 17.271 1 5255000 33982 3128 22762 23181 39853 39853 0.01673414506035442 LPAGEYHKVY 10 Unmodified _LPAGEYHKVY_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MSMS AL20221201_MKP_PDAC_01 4 392.8734741210938 3 392.873113 1175.59751 NaN NaN NaN NaN NaN NaN NaN 30.23 1 26.733 26.233 27.233 -3.497 0 0 0 0.59691 1 17048 17048 23.801 10.186 1 33983 3128 22762 23181 39854 39854 0.01673414506035442 LPAGGAPTVF 10 Unmodified _LPAGGAPTVF_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 929.5073852539062 1 929.509094 928.501818 -0.050111 -4.6578E-05 -1.1057 -0.0010278 -1.1559 -0.0010744 929.5083581364204 60.392 0.16171 59.901 59.806 59.968 -0.49079 12 7 2 0 0 0 0.011274 1 32886 32886 85.357 43.262 1 1695300 33984 16175 22763 23182 39855 39855 0.034706863857991266 LPAGGILVF 9 Unmodified _LPAGGILVF_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.5416870117188 1 886.539666 885.53239 0.59231 0.00052511 1.424 0.0012624 2.0163 0.0017875 886.5406442972005 100.25 0.20256 94.07 93.938 94.141 -6.1757 18 11 2 0 0 0 0.028712 1 66943 66943 56.048 19.582 1 23797000 33985 6082 22764 23183 39856 39856 0.08504464770851428 LPAGIVAVL 9 Unmodified _LPAGIVAVL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.55615234375 1 852.555316 851.54804 -0.062614 -5.3382E-05 0.57945 0.00049402 0.51684 0.00044063 852.5557409600324 87.621 0.52737 87.117 86.855 87.382 -0.50423 72 23 4 0 0 0 0.028712 1 47844 47844 56.048 10.298 1 18367000 33986 3667 22765 23184 39857 39857 0.11632751287891097 LPAGIVAVL 9 Unmodified _LPAGIVAVL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 853.069091796875 1 852.555316 851.54804 0.039435 3.362E-05 0.13411 0.00011434 0.17355 0.00014796 852.5553516116927 87.017 0.31258 87.075 86.851 87.164 0.05822 19 14 2 0 0 0 0.034575 1 48241 48241 56.048 10.298 1 18306000 33987 3667 22765 23184 39858 39858 0.11632751287891097 LPAGIVAVL 9 Unmodified _LPAGIVAVL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 852.5569458007812 1 852.555316 851.54804 1.1818 0.0010075 0.10861 9.2594E-05 1.2904 0.0011001 852.5552426997465 98.031 0.9424 91.855 91.279 92.221 -6.1757 140 60 3 0 0 0 0.028712 3 64904 64649;64904;65169 56.048 10.298 1 136100000 33988 3667 22765 23184 39859;39860;39861 39860 0.11632751287891097 LPAGIVAVL 9 Unmodified _LPAGIVAVL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.7812805175781 2 426.781296 851.54804 1.4941 0.00063767 -0.17072 -7.286E-05 1.3234 0.00056481 426.7811681496702 98.06 0.69701 91.884 91.493 92.19 -6.1757 120 46 4 0 0 0 0.028712 2 64767 64767;64894 56.048 10.298 1 53676000 33989 3667 22765 23184 39862;39863 39862 0.11632751287891097 LPAGIYHRF 9 Unmodified _LPAGIYHRF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5340576171875 3 358.534543 1072.5818 0.32042 0.00011488 -0.60538 -0.00021705 -0.28496 -0.00010217 358.53424004024555 40.338 0.32105 40.343 40.149 40.47 0.0050583 41 14 4 0 0 0 0.062454 2 21453 21453;21567 41.956 29.715 1 13582000 33990 9065 22766 23185 39864;39865 39864 0.0484117277965197 LPAGIYHRF 9 Unmodified _LPAGIYHRF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5354919433594 3 358.534543 1072.5818 1.2552 0.00045004 3.6904 0.0013231 4.9456 0.0017732 358.5345228861556 44.72 0.55396 39.868 39.662 40.216 -4.852 98 42 3 0 0 0 0.091924 3 27389 27257;27389;27447 34.932 13.342 1 33162000 33991 9065 22766 23185 39866;39867;39868 39867 0.0484117277965197 LPAGPDILRTY 11 Unmodified _LPAGPDILRTY_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.340087890625 2 608.340238 1214.66592 0.12989 7.9018E-05 0.37177 0.00022616 0.50166 0.00030518 608.3404089459075 61.642 0.33727 61.155 60.988 61.325 -0.48764 29 15 2 0 0 0 0.13728 1 33620 33620 39.213 21.067 1 8250500 33992 5874 22767 23186 39869 39869 0.06717659085916239 LPAGPDILRTY 11 Unmodified _LPAGPDILRTY_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3405151367188 2 608.340238 1214.66592 0.44719 0.00027204 -0.66023 -0.00040164 -0.21304 -0.0001296 608.3399458327475 67.542 0.36476 61.366 61.181 61.546 -6.1757 30 20 2 0 0 0 0.12646 1 44022 44022 47.732 26.142 1 10598000 33993 5874 22767 23186 39870 39870 0.06717659085916239 LPAGPDILRTY 11 Unmodified _LPAGPDILRTY_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.841796875 2 608.340238 1214.66592 0.37649 0.00022903 -0.2472 -0.00015038 0.12929 7.8654E-05 608.3400257542253 67.916 0.37796 61.741 61.546 61.924 -6.1757 39 21 2 0 0 0 0.23243 2 44233 44233;44398 40.725 37.075 1 17805000 33994 5874 22767 23186 39871;39872 39871 0.06717659085916239 LPAGPDILRTY 11 Unmodified _LPAGPDILRTY_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.340238 1214.66592 0.38981 0.00023714 -0.60751 -0.00036957 -0.21769 -0.00013243 608.3397857184201 61.292 0.26011 61.249 61.084 61.344 -0.04351 -0.0078527 -0.00069896 NaN 47.732 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5173200 33995 5874 22767 23186 0.06717659085916239 LPAGTILKL 9 Unmodified _LPAGTILKL_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7636108398438 2 463.307678 924.600803 0.64932 0.00030083 1.7254 0.00079937 2.3747 0.0011002 463.30872433056686 65.067 0.18253 65.067 64.978 65.16 7.6294E-06 15 8 2 0 0 0 0.11314 1 35661 35661 31.268 5.0002 1 2525100 33996 8230 22768 23187 39873 39873 0.13548709350698118 LPAGWILSH 9 Unmodified _LPAGWILSH_ 0 0 0 ENSG00000176340|ENST00000314133|COX8A ENSG00000176340|ENST00000314133|COX8A ENSG00000176340|ENST00000314133|COX8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.280029296875 2 497.279452 992.544351 0.96915 0.00048194 0.82548 0.0004105 1.7946 0.00089244 497.2798347870774 63.74 0.29256 63.73 63.571 63.863 -0.010532 31 13 3 0 0 0 0.012148 1 34865 34865 74.423 20.847 1 5146300 33997 8585 22769 23188 39874 39874 0.047780815140413324 LPAHIPYQEL 10 Unmodified _LPAHIPYQEL_ 0 0 0 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1 ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8203735351562 2 590.821681 1179.62881 -0.83231 -0.00049175 -0.84268 -0.00049787 -1.675 -0.00098962 590.8211734149176 56.223 0.16995 55.737 55.654 55.823 -0.48554 19 8 3 0 0 0 0.1028 1 30525 30525 46.021 15.384 1 5481600 33998 1737 22770 23189 39875 39875 0.046179875401321624 LPAHIPYQEL 10 Unmodified _LPAHIPYQEL_ 0 0 0 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1 ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8206787109375 2 590.821681 1179.62881 0.44404 0.00026235 -0.0039882 -2.3563E-06 0.44005 0.00025999 591.3233218463316 62.015 0.30226 55.839 55.619 55.921 -6.1757 22 16 2 0 0 0 0.33553 1 40019 40019 25.399 9.5521 1 14781000 33999 1737 22770 23189 39876 39876 0.046179875401321624 LPAHPEVPD 9 Unmodified _LPAHPEVPD_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.2825317382812 2 487.750724 973.486896 1.3856 0.00067583 -1.1261 -0.00054925 0.25951 0.00012658 487.7504430689512 59.006 0.26896 52.932 52.779 53.048 -6.0745 17 14 2 0 0 0 0.1474 1 37851 37851 21.747 0 1 7372700 34000 2452 22771 23190 39877 39877 -0.0009080548219344564 LPAHSGASLL 10 Unmodified _LPAHSGASLL_ 0 0 0 CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2738647460938 2 483.274367 964.53418 -0.20314 -9.817E-05 -0.30591 -0.00014784 -0.50905 -0.00024601 483.2740956997627 21.09 0.13786 21.09 21.011 21.149 0 29 21 2 0 0 0 0.56348 1 10638 10638 13.042 3.6593 1 1094800 34001 221 22772 23191 39878 39878 0.050494737888243435 LPAHSGASLL 10 Unmodified _LPAHSGASLL_ 0 0 0 CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant CTDSP1|p.P61S|1|0.2|ENSG00000144579|chr2:218401677-218401677|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.27490234375 2 483.274367 964.53418 0.28634 0.00013838 0.8674 0.00041919 1.1537 0.00055757 483.2748356239391 23.965 0.27635 21.138 21.008 21.284 -2.8273 35 15 3 0 0 0 0.27276 1 13095 13095 29.082 1.8583 1 7476200 34002 221 22772 23191 39879 39879 0.050494737888243435 LPAINGIVF 9 Unmodified _LPAINGIVF_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 943.5611572265625 1 943.56113 942.553853 -0.19972 -0.00018845 -0.40714 -0.00038416 -0.60687 -0.00057261 943.5617903339612 99.7 0.1276 93.524 93.46 93.588 -6.1757 16 7 3 0 0 0 0.012148 1 66451 66451 74.423 7.0789 1 30905000 34003 6208;1272 22773 23192 39880 39880 0.0802784979957778 LPAINGIVF 9 Unmodified _LPAINGIVF_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2849426269531 2 472.284203 942.553853 0.29887 0.00014115 1.1998 0.00056663 1.4986 0.00070778 472.28479300822573 99.753 0.21617 93.578 93.448 93.664 -6.1757 19 14 2 0 0 0 0.026094 1 66491 66491 57.471 15.377 1 20682000 34004 6208;1272 22773 23192 39881 39881 0.0802784979957778 LPAIWVFH 8 Unmodified _LPAIWVFH_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7784729003906 2 491.779088 981.543623 0.8303 0.00040832 -1.5606 -0.00076745 -0.73025 -0.00035912 491.7782233106142 69.071 0.36535 69.102 68.93 69.295 0.030914 56 17 4 0 0 0 0.61999 1 37877 37877 24.21 13.095 1 21446000 + 34005 16929 22774 23193 39882 39882 0.05211286864994236 LPAKCLPK 8 Unmodified _LPAKCLPK_ 0 0 0 nc|ENSG00000285946|P0DV60|LCE7A nc|ENSG00000285946|P0DV60|LCE7A nc|ENSG00000285946|P0DV60|LCE7A MSMS AL20221201_MKP_PDAC_01 4 435.2691040039062 2 435.267499 868.520445 NaN NaN NaN NaN NaN NaN NaN 32.923 1 29.067 28.567 29.567 -3.8562 0 0 0 0.77249 1 18829 18829 24.674 0 1 34006 16622 22775 23194 39883 39883 0.08092524756011699 LPAKDIQTNVY 11 Unmodified _LPAKDIQTNVY_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.3435668945312 2 631.342978 1260.6714 0.14712 9.2881E-05 0.0016047 1.0131E-06 0.14872 9.3895E-05 631.3429474131628 37.269 0.40188 37.269 37.056 37.458 0 80 20 5 0 0 0 0.018102 2 19735 19735;19847 63.227 30.33 1 135440000 34007 1696 22776 23195 39884;39885 39884 0.0514933787769678 LPAKDIQTNVY 11 Unmodified _LPAKDIQTNVY_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3439331054688 2 631.342978 1260.6714 -0.34825 -0.00021986 0.74855 0.00047259 0.4003 0.00025273 631.3434359190154 37.659 0.37402 37.388 37.206 37.58 -0.27133 49 16 4 0 0 0 0.0094656 1 19743 19743 73.196 30.361 1 45727000 34008 1696 22776 23195 39886 39886 0.0514933787769678 LPAKDIQTNVY 11 Unmodified _LPAKDIQTNVY_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.3430786132812 2 631.342978 1260.6714 -0.096078 -6.0658E-05 1.2228 0.00077202 1.1267 0.00071136 631.3437823274173 37.32 0.26948 37.341 37.195 37.464 0.021545 29 11 3 0 0 0 0.0033438 1 19783 19783 75.571 25.829 1 6216300 34009 1696 22776 23195 39887 39887 0.0514933787769678 LPAKDIQTNVY 11 Unmodified _LPAKDIQTNVY_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.844482421875 2 631.342978 1260.6714 0.55606 0.00035107 0.051185 3.2315E-05 0.60725 0.00038338 631.3428262059292 43.047 0.83471 38.282 37.991 38.826 -4.7648 167 55 5 0 0 0 6.8886E-15 3 25932 25932;26066;26205 147.24 87.872 1 623420000 34010 1696 22776 23195 39888;39889;39890 39888 0.0514933787769678 LPAKIAHEHF 10 Unmodified _LPAKIAHEHF_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2168884277344 3 388.217102 1161.62948 1.0746 0.00041718 -0.40802 -0.0001584 0.66659 0.00025878 388.2169969557261 30.125 0.2247 26.628 26.572 26.797 -3.497 13 10 2 0 0 0 0.051223 1 17029 17029 42.835 5.0639 1 12353000 34011 932 22777 23196 39891 39891 0.055128269798160545 LPAKILVEF 9 Unmodified _LPAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3214721679688 2 515.320786 1028.62702 0.62697 0.00032309 -0.88485 -0.00045598 -0.25788 -0.00013289 515.3201961045212 73.652 0.61694 73.176 72.932 73.549 -0.47588 93 28 6 0 0 0 0.01958 2 40241 40241;40344 63.961 31.655 1 180650000 34012 3669 22778 23197 39892;39893 39892 0.11384978522164602 LPAKILVEF 9 Unmodified _LPAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3186645507812 2 515.320786 1028.62702 0.31715 0.00016343 -1.4885 -0.00076705 -1.1713 -0.00060362 515.3198988925425 73.081 1.395 73.123 72.86 74.255 0.041733 195 64 6 0 0 0 0.0082475 5 40157 40157;40258;40367;40470;40571 92.653 36.476 1 1243900000 34013 3669 22778 23197 39894;39895;39896;39897;39898 39894 0.11384978522164602 LPAKILVEF 9 Unmodified _LPAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.321044921875 2 515.320786 1028.62702 0.57999 0.00029888 -0.28967 -0.00014927 0.29032 0.00014961 515.3204490089126 92.715 2.0487 86.54 85.757 87.806 -6.1757 394 131 5 0 0 0 0.0094097 7 60958 60840;60958;61084;61210;61332;61462;61594 82.529 31.175 1 2476100000 34014 3669 22778 23197 39899;39900;39901;39902;39903;39904;39905 39900 0.11384978522164602 LPAKILVEF 9 Unmodified _LPAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20221201_MKP_PDAC_01 4 1029.540405273438 1 1029.63429 1028.62702 0.39453 0.00040623 0.35117 0.00036158 0.7457 0.0007678 1029.6346693462726 92.76 0.78625 86.585 86.101 86.887 -6.1757 87 48 2 0 0 0 0.047788 1 61045 61045 45.7 13.394 1 24093000 34015 3669 22778 23197 39906 39906 0.11384978522164602 LPAKILVEF 9 Unmodified _LPAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.320786 1028.62702 0.63607 0.00032778 0.022646 1.167E-05 0.65871 0.00033945 515.3208044043008 73.237 0.206 73.237 73.149 73.355 0 0.05851 0.0011236 NaN 92.653 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 954640 34016 3669 22778 23197 0.11384978522164602 LPALDNPA 8 Unmodified _LPALDNPA_ 0 0 0 ENST00000172229.7_1_17:47591456-47591825:+|nuORF ENST00000172229.7_1_17:47591456-47591825:+|nuORF ENST00000172229.7_1_17:47591456-47591825:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.436279296875 1 810.435595 809.428318 -0.28475 -0.00023077 0.28354 0.00022979 -0.0012072 -9.7837E-07 810.4359075719443 55.19 0.21378 55.19 55.005 55.218 0 11 8 2 0 0 0 0.57045 1 30637 30637 28.487 3.813 1 820430 34017 10980 22779 23198 39907 39907 0.015981379433242182 LPALEASQRF 10 Unmodified _LPALEASQRF_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3109130859375 2 566.31148 1130.60841 1.0173 0.00057611 0.85775 0.00048575 1.8751 0.0010619 566.3113955549655 50.582 0.24651 50.168 50.072 50.318 -0.41351 23 11 3 0 0 0 0.095786 1 27236 27236 47.594 7.6447 1 2871800 34018 4372 22780 23199 39908 39908 0.04832816880320934 LPALEASQRF 10 Unmodified _LPALEASQRF_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MSMS AL20221201_MKP_PDAC_01 4 566.310546875 2 566.31148 1130.60841 NaN NaN NaN NaN NaN NaN NaN 56.302 1 50.325 49.825 50.825 -5.9769 0 0 0 0.16751 1 35915 35915 45.74 12.954 1 34019 4372 22780 23199 39909 39909 0.04832816880320934 LPALFLHSF 9 Unmodified _LPALFLHSF_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7980346679688 2 522.797478 1043.5804 1.2363 0.00064632 -0.59541 -0.00031128 0.64086 0.00033504 522.7969099226138 98.441 0.11739 92.266 92.19 92.308 -6.1757 11 7 2 0 0 0 0.0077963 1 65301 65301 109.63 65.771 1 17402000 34020 6309 22781 23200 39910 39910 0.060355386908895525 LPALFRDISM 10 Oxidation (M) _LPALFRDISM(Oxidation (M))_ LPALFRDISM(1) LPALFRDISM(78) 0 0 1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8148193359375 2 589.815541 1177.61653 0.31906 0.00018819 -0.060261 -3.5543E-05 0.2588 0.00015264 589.8155818701731 67.676 0.52046 67.694 67.514 68.035 0.018036 60 25 3 0 0 0 0.017375 2 37269 37166;37269 78.06 38.111 1 6647500 34021 5336 22782 23201 39911;39912 39912 977 0.034826278054197246 LPALFRDISM 10 Unmodified _LPALFRDISM_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8185424804688 2 581.818084 1161.62162 1.2349 0.00071846 0.48222 0.00028057 1.7171 0.00099903 581.8184362139984 97.828 0.21242 91.653 91.553 91.765 -6.1757 37 14 3 0 0 0 0.1711 1 64838 64838 42.312 23.055 1 49633000 34022 5336 22782 23202 39913 39913 0.04726931668051293 LPALFTDLY 9 Unmodified _LPALFTDLY_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8;ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.78759765625 2 526.786776 1051.559 0.55568 0.00029272 -0.73494 -0.00038716 -0.17926 -9.4431E-05 526.7862766916446 82.216 0.23694 81.721 81.557 81.794 -0.4952 17 9 3 0 0 0 0.3554 1 45024 45024 14.582 5.2343 1 716750 34023 6636 22783 23203 39914 39914 0.035281088715237274 LPALFTDLY 9 Unmodified _LPALFTDLY_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8;ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7864990234375 2 526.786776 1051.559 0.26564 0.00013994 1.0225 0.00053862 1.2881 0.00067856 526.7871297128717 98.068 0.32286 97.825 97.727 98.05 -0.24277 30 11 4 0 0 0 0.058206 1 53575 53575 42.968 10.851 1 3384300 34024 6636 22783 23203 39915 39915 0.035281088715237274 LPALFTDLY 9 Unmodified _LPALFTDLY_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8;ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.78662109375 2 526.786776 1051.559 3.2714 0.0017234 1.6776 0.00088373 4.949 0.0026071 526.7876032269425 97.812 0.41136 97.794 97.604 98.015 -0.018196 44 14 4 0 0 0 0.023761 2 54300 54300;54396 59.795 27.678 1 14699000 34025 6636 22783 23203 39916;39917 39916 0.035281088715237274 LPALFTDLY 9 Unmodified _LPALFTDLY_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8;ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MSMS AL20221201_MKP_PDAC_01 4 526.7862548828125 2 526.786776 1051.559 NaN NaN NaN NaN NaN NaN NaN 100.6 1 94.429 93.929 94.929 -6.1757 0 0 0 0.10161 1 67314 67314 42.968 10.851 1 34026 6636 22783 23203 39918 39918 0.035281088715237274 LPALFTDLY 9 Unmodified _LPALFTDLY_ 0 0 0 nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8;ENST00000514089.5_1_17:47007839-47013524:-|nuORF;ENST00000509989.5_1_17:47007839-47014253:-|nuORF nc|ENSG00000159210|Q96H20-2|SNF8 nc|ENSG00000159210|Q96H20-2|SNF8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 526.786776 1051.559 0.43917 0.00023135 3.3973 0.0017896 3.8365 0.002021 526.7879733201746 97.831 0.10349 97.831 97.739 97.843 0 0.014707 0.0019622 NaN 59.795 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 179390 34027 6636 22783 23203 0.035281088715237274 LPALGDVF 8 Unmodified _LPALGDVF_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 831.462890625 1 831.461081 830.453805 0.051271 4.2629E-05 1.0677 0.00088773 1.1189 0.00093036 831.4619933350907 83.811 0.24437 83.311 83.148 83.392 -0.49961 15 9 2 0 0 0 0.65867 1 45835 45835 20.871 0 1 298810 34028 4607 22784 23204 39919 39919 0.031796124657603286 LPALITAVL 9 Unmodified _LPALITAVL_ 0 0 0 nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000217128|Q8TF40-2|FNIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.5971069335938 1 910.597181 909.589904 0.81967 0.00074639 -1.0476 -0.00095391 -0.2279 -0.00020752 910.5961661980369 101.17 0.10696 94.997 94.939 95.046 -6.1757 11 6 2 0 0 0 0.016494 1 67833 67833 67.035 3.4725 1 50467000 34029 10543 22785 23205 39920 39920 0.13149306976424668 LPALLEKNAM 10 Oxidation (M) _LPALLEKNAM(Oxidation (M))_ LPALLEKNAM(1) LPALLEKNAM(50) 0 0 1 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;nc|ENSG00000123104|Q14571-2|ITPR2;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.3098754882812 2 558.310092 1114.60563 0.84854 0.00047375 -1.4779 -0.00082515 -0.62941 -0.00035141 558.3100533384269 45.934 0.22818 45.934 45.86 46.088 0 15 10 2 0 0 0 0.085354 1 25131 25131 49.933 13.806 1 3253300 34030 1673;3680;6083 22786 23206 39921 39921 280 0.05291225431142266 LPALLEKNAM 10 Oxidation (M) _LPALLEKNAM(Oxidation (M))_ LPALLEKNAM(1) LPALLEKNAM(100) 0 0 1 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;nc|ENSG00000123104|Q14571-2|ITPR2;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3142700195312 2 558.310092 1114.60563 0.5756 0.00032136 0.53735 0.00030001 1.113 0.00062137 558.3103425511715 46.175 0.3688 45.838 45.665 46.034 -0.33664 30 18 2 0 0 0 0.0034079 1 24668 24668 103.35 51.085 1 6545900 34031 1673;3680;6083 22786 23206 39922 39922 280 0.05291225431142266 LPALLEKNAM 10 Oxidation (M) _LPALLEKNAM(Oxidation (M))_ LPALLEKNAM(1) LPALLEKNAM(86) 0 0 1 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;nc|ENSG00000123104|Q14571-2|ITPR2;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3099365234375 2 558.310092 1114.60563 0.92757 0.00051787 -3.077 -0.0017179 -2.1494 -0.0012001 559.3076519351538 51.52 0.32212 45.871 45.622 45.945 -5.649 35 19 3 0 0 0 0.011118 2 32355 32314;32355 85.642 36.087 1 26823000 34032 1673;3680;6083 22786 23206 39923;39924 39924 280 0.05291225431142266 LPALLEKNAM 10 Unmodified _LPALLEKNAM_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;nc|ENSG00000123104|Q14571-2|ITPR2;ENST00000467056.5_1_3:4536161-4687445:+|nuORF;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3145751953125 2 550.312635 1098.61072 1.0054 0.00055326 -2.876 -0.0015827 -1.8706 -0.0010294 550.3126637976084 61.639 0.49199 55.464 55.331 55.823 -6.1757 61 25 3 0 0 0 0.093652 2 39682 39682;39806 63.961 27.833 1 35842000 34033 1673;3680;6083 22786 23207 39925;39926 39925 0.06535529293773834 LPALLRQD 8 Unmodified _LPALLRQD_ 0 0 0 ENSG00000203952|ENST00000695460|CCDC160 ENSG00000203952|ENST00000695460|CCDC160 ENSG00000203952|ENST00000695460|CCDC160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.276611328125 2 463.276909 924.539266 0.54518 0.00025257 0.41305 0.00019136 0.95823 0.00044392 463.2771096141233 44.857 0.47338 40.005 39.759 40.233 -4.852 91 36 3 0 0 0 0.36356 1 27286 27286 48.346 4.4876 1 73920000 34034 10235 22787 23208 39927 39927 0.07397777651419801 LPALPISITF 10 Unmodified _LPALPISITF_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENST00000555867.1_1_14:73673029-73685994:+|nuORF;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1 nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.32861328125 2 536.326068 1070.63758 0.1013 5.4328E-05 1.6908 0.00090684 1.7921 0.00096117 536.3271448791463 100.95 0.16359 100.91 100.84 101 -0.04216 6 5 2 0 0 0 0.045724 1 56092 56092 60.39 20.432 1 5593600 34035 5554;1305 22788 23209 39928 39928 0.10508961176583398 LPALPISITF 10 Unmodified _LPALPISITF_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENST00000555867.1_1_14:73673029-73685994:+|nuORF;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1 nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3271484375 2 536.326068 1070.63758 0.76695 0.00041133 0.70611 0.00037871 1.4731 0.00079004 536.3265173957842 101.49 0.20243 95.315 95.192 95.395 -6.1757 30 9 5 0 0 0 0.02544 1 68091 68091 70.716 22.37 1 69445000 34036 5554;1305 22788 23209 39929 39929 0.10508961176583398 LPALPLAEL 9 Unmodified _LPALPLAEL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;nc|ENSG00000094880|Q9UJX2-2|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5767822265625 1 936.576445 935.569169 0.52146 0.00048839 -0.87632 -0.00082074 -0.35486 -0.00033235 936.5759387219773 100.57 0.11533 94.397 94.33 94.445 -6.1757 14 7 2 0 0 0 0.0081063 1 67297 67297 93.883 26.848 1 37794000 34037 1638 22789 23210 39930 39930 0.09880716596740058 LPALPLAEL 9 Unmodified _LPALPLAEL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF;nc|ENSG00000094880|Q9UJX2-2|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7919616699219 2 468.791861 935.569169 0.58338 0.00027348 0.23197 0.00010875 0.81535 0.00038223 468.7917237730582 100.56 0.14714 94.381 94.312 94.459 -6.1757 17 9 3 0 0 0 0.095049 1 67319 67319 34.187 14.748 1 37787000 34038 1638 22789 23210 39931 39931 0.09880716596740058 LPALQSTITRF 11 Unmodified _LPALQSTITRF_ 0 0 0 ENSG00000132746|ENST00000673966|ALDH3B2;ENST00000534425.5_1_11:67431830-67435009:-|nuORF;nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1 ENSG00000132746|ENST00000673966|ALDH3B2 ENSG00000132746|ENST00000673966|ALDH3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.862060546875 2 623.861338 1245.70812 1.0663 0.00066524 -0.91802 -0.00057271 0.1483 9.252E-05 623.8609221811392 65.836 0.34079 65.846 65.613 65.953 0.0095596 30 16 3 0 0 0 0.014658 1 36080 36080 62.869 22.629 1 5000100 34039 4446 22790 23211 39932 39932 0.09509634494247621 LPALRSIGL 9 Unmodified _LPALRSIGL_ 0 0 0 nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENST00000483821.1_1_6:33162461-33163032:-|nuORF;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB nc|ENSG00000186350|P19793-2|RXRA nc|ENSG00000186350|P19793-2|RXRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.3033752441406 2 470.302927 938.591301 0.89649 0.00042162 0.39059 0.0001837 1.2871 0.00060532 470.3030401338672 66.479 0.38298 66.488 66.241 66.624 0.0095596 42 18 3 0 0 0 0.069655 1 36438 36438 40.239 3.733 1 4340800 34040 9472 22791 23212 39933 39933 0.11954941065175717 LPAMAGISLCI 11 Unmodified _LPAMAGISLCI_ 0 0 0 REV__ENST00000450366.6_1_2:211302439-211302490:-|nuORF REV__ENST00000450366.6_1_2:211302439-211302490:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7957763671875 2 544.795763 1087.57697 0.84429 0.00045997 -1.1625 -0.00063335 -0.31825 -0.00017338 544.7953871605963 69.054 1.1602 62.878 62.455 63.615 -6.1757 116 63 3 0 0 0 0.25654 1 45130 45130 29.082 4.0906 1 54803000 + 34041 27201 22792 23213 39934 39934 0.03668784530373159 LPAMAGISLCI 11 Unmodified _LPAMAGISLCI_ 0 0 0 REV__ENST00000450366.6_1_2:211302439-211302490:-|nuORF REV__ENST00000450366.6_1_2:211302439-211302490:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 544.795763 1087.57697 0.32336 0.00017617 -2.9241 -0.001593 -2.6007 -0.0014169 544.794624436333 63.019 0.27776 62.998 62.851 63.129 -0.021614 0.05985 -0.0016629 NaN 29.082 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1225800 + 34042 27201 22792 23213 0.03668784530373159 LPAMYTVL 8 Unmodified _LPAMYTVL_ 0 0 0 REV__ENSG00000137252|ENST00000370862|HCRTR2 REV__ENSG00000137252|ENST00000370862|HCRTR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 453.8817443847656 2 454.251514 906.488476 1.2414 0.00056392 -1.1648 -0.0005291 0.076662 3.4824E-05 454.25108515073066 86.151 0.29377 79.976 79.794 80.088 -6.1757 22 15 2 0 0 0 8.7369 1 56840 56840 36.466 0 1 4876500 + 34043 20227 22793 23214 39935 39935 0.03149112282198985 LPANHAPDI 9 Unmodified _LPANHAPDI_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;ENST00000483772.1_1_13:52538956-52548098:-|nuORF nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2288208007812 2 474.250892 946.48723 0.2158 0.00010234 -0.37843 -0.00017947 -0.16263 -7.7129E-05 474.250833581693 31.208 0.1866 31.208 31.152 31.339 0 14 8 2 0 0 0 0.19891 1 16228 16228 11.64 0 1 861530 34044 3689 22794 23215 39936 39936 0.011846142376612079 LPANHVLVNQY 11 Unmodified _LPANHVLVNQY_ 0 0 0 ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3446655273438 2 634.343312 1266.67207 0.56609 0.00035909 0.93742 0.00059465 1.5035 0.00095374 634.3441493643194 48.2 0.21653 42.966 42.87 43.087 -5.2339 18 12 2 0 0 0 0.0088414 1 30006 30006 69.105 47.515 1 9864100 34045 14257 22795 23216 39937 39937 0.0494017731743952 LPANLLYKY 9 Unmodified _LPANLLYKY_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10;ENST00000522081.1_1_8:19680006-19681556:+|nuORF;ENST00000523869.1_2_8:19675786-19680957:+|nuORF ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.815673828125 2 547.815867 1093.61718 0.67052 0.00036732 0.090394 4.9519E-05 0.76091 0.00041684 547.8157247936806 58.389 0.27534 58.328 58.195 58.47 -0.060722 27 13 3 0 0 0 0.015445 1 31793 31793 68.081 35.775 1 2268200 34046 2218 22796 23217 39938 39938 0.07411790516812289 LPANVKQAY 9 Unmodified _LPANVKQAY_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144874301-144875226:-|nuORF nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2825317382812 2 502.282192 1002.54983 -0.005567 -2.7962E-06 0.48357 0.00024289 0.478 0.00024009 502.2825160652205 29.179 0.17923 29.179 29.082 29.262 0 12 8 2 0 0 0 0.06187 1 15110 15110 42.095 15.753 1 1242000 34047 8930 22797 23218 39939 39939 0.04865760305847289 LPANVKQAY 9 Unmodified _LPANVKQAY_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144874301-144875226:-|nuORF nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MSMS AL20221201_MKP_PDAC_01 4 502.2835998535156 2 502.282192 1002.54983 NaN NaN NaN NaN NaN NaN NaN 33.169 1 29.313 28.813 29.813 -3.8562 0 0 0 0.080768 1 19000 19000 48.346 10.372 1 34048 8930 22797 23218 39940 39940 0.04865760305847289 LPAPALVL 8 Unmodified _LPAPALVL_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2626647949219 2 397.262739 792.510926 -0.75414 -0.00029959 -1.9877 -0.00078962 -2.7418 -0.0010892 397.26176527782275 101.98 0.56302 101.94 101.64 102.2 -0.045853 31 18 2 0 0 0 0.80975 1 56692 56692 0.79363 0 1 1668500 34049 3801 22798 23219 39941 39941 0.10637079742116384 LPAPALVL 8 Unmodified _LPAPALVL_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 397.262739 792.510926 0.030519 1.2124E-05 -3.8412 -0.001526 -3.8107 -0.0015138 397.2610385030597 101.92 0.48018 101.92 101.9 102.38 0 -0.0097756 -0.00032129 NaN 0.79363 39 29 2 NaN NaN NaN NaN 0 NaN NaN 0 727000 34050 3801 22798 23219 0.10637079742116384 LPAPEFYM 8 Unmodified _LPAPEFYM_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2304077148438 2 484.233322 966.45209 -0.43378 -0.00021005 -4.3087 -0.0020864 -4.7425 -0.0022965 484.23070912253235 30.623 0.22703 30.623 30.503 30.73 0 17 10 3 0 0 0 0.57408 1 15919 15919 28.173 3.4993 1 1820200 + 34051 19133 22799 23220 39942 39942 -0.032477646145025574 LPAPEFYM 8 Unmodified _LPAPEFYM_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 484.233322 966.45209 -0.43378 -0.00021005 -4.3087 -0.0020864 -4.7425 -0.0022965 484.23070912253235 30.623 0.22703 30.623 30.503 30.73 0 0 0 NaN 28.173 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1820200 + 34052 19133 22799 23220 -0.032477646145025574 LPAPELPEAF 10 Unmodified _LPAPELPEAF_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.773193359375 2 542.289682 1082.56481 0.76392 0.00041426 4.2535 0.0023066 5.0174 0.0027209 542.291393127518 80.014 0.26302 79.525 79.377 79.64 -0.48932 15 9 3 0 0 0 0.23552 1 43796 43796 14.838 8.1151 1 800200 34053 6247 22800 23221 39943 39943 0.02683207383165609 LPAPELPEAF 10 Unmodified _LPAPELPEAF_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.289682 1082.56481 0.22253 0.00012067 2.3087 0.001252 2.5313 0.0013727 542.2905799926882 79.439 0.17407 79.439 79.372 79.546 0 -0.042695 -0.00071666 NaN 32.305 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 342100 34054 6247 22800 23221 0.02683207383165609 LPAPFEESL 9 Unmodified _LPAPFEESL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7614135742188 2 501.760758 1001.50696 0.68131 0.00034186 0.5602 0.00028109 1.2415 0.00062294 501.76091531188945 72.954 0.42416 72.954 72.749 73.174 0 54 19 4 0 0 0 0.019979 2 40641 40543;40641 63.563 12.708 1 6061200 34055 8296;16388 22801 23222 39944;39945 39945 0.006269454577591205 LPAPFEESL 9 Unmodified _LPAPFEESL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1002.515991210938 1 1002.51424 1001.50696 0.16156 0.00016197 0.49006 0.0004913 0.65163 0.00065327 1002.5150126731942 72.948 0.37628 72.948 72.749 73.126 0 41 17 3 0 0 0 0.0095811 1 40558 40558 81.613 43.462 1 2171600 34056 8296;16388 22801 23222 39946 39946 0.006269454577591205 LPAPFEESL 9 Unmodified _LPAPFEESL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.76171875 2 501.760758 1001.50696 0.37392 0.00018762 0.78703 0.0003949 1.1609 0.00058252 501.7610644136923 73.394 0.31089 72.919 72.781 73.092 -0.47588 24 13 2 0 0 0 0.12841 1 40233 40233 30.225 17.693 1 1007100 34057 8296;16388 22801 23222 39947 39947 0.006269454577591205 LPAPFEESL 9 Unmodified _LPAPFEESL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7619323730469 2 501.760758 1001.50696 0.95058 0.00047697 -0.067935 -3.4087E-05 0.88265 0.00044288 501.76069706240963 80.965 0.41335 74.79 74.566 74.98 -6.1757 48 22 3 0 0 0 0.0081063 2 53054 53054;53170 93.883 36.412 1 35883000 34058 8296;16388 22801 23222 39948;39949 39948 0.006269454577591205 LPAPGVPAW 9 Unmodified _LPAPGVPAW_ 0 0 0 ENSG00000124733|ENST00000244711|MEA1 ENSG00000124733|ENST00000244711|MEA1 ENSG00000124733|ENST00000244711|MEA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2559204101562 2 454.255446 906.496338 0.78939 0.00035859 -0.3206 -0.00014564 0.46879 0.00021295 454.2552742656947 78.032 0.5361 71.856 71.619 72.155 -6.1757 48 30 2 0 0 0 0.085487 2 51079 50954;51079 36.466 8.2929 1 22702000 34059 3813 22802 23223 39950;39951 39951 0.03935007593975115 LPAPKGPAL 9 Unmodified _LPAPKGPAL_ 0 0 0 ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2716064453125 2 432.271096 862.527639 0.36115 0.00015612 0.27275 0.0001179 0.6339 0.00027402 432.2711945066485 40.216 0.26968 39.919 39.804 40.073 -0.29716 27 12 3 0 0 0 0.095405 1 21300 21300 34.102 1.9855 1 4099400 34060 5486 22803 23224 39952 39952 0.09087580628079195 LPAPKGPAL 9 Unmodified _LPAPKGPAL_ 0 0 0 ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC ENSG00000143294|ENST00000271526|PRCC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 432.271096 862.527639 0.48394 0.00020919 0.85797 0.00037088 1.3419 0.00058007 432.27129250358314 39.857 0.10412 39.862 39.832 39.936 0.0050545 -0.028034 0.00046545 NaN 34.102 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 445060 34061 5486 22803 23224 0.09087580628079195 LPAPNHDTL 9 Unmodified _LPAPNHDTL_ 0 0 0 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2542724609375 2 489.256174 976.497795 -0.57193 -0.00027982 -2.5086 -0.0012273 -3.0805 -0.0015072 489.25486605269356 33.078 0.16182 33.078 32.968 33.13 0 12 7 2 0 0 0 0.023481 1 17326 17326 60.074 25.971 1 5086500 34062 6645 22804 23225 39953 39953 0.00860596892096055 LPAPPHIDVMY 11 Oxidation (M) _LPAPPHIDVM(Oxidation (M))Y_ LPAPPHIDVM(1)Y LPAPPHIDVM(48)Y 0 0 1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8211669921875 2 634.820824 1267.62709 -0.32069 -0.00020358 -0.12185 -7.7351E-05 -0.44254 -0.00028094 634.821230951831 60.409 0.35939 59.918 59.708 60.068 -0.49079 34 17 3 0 0 0 0.064513 1 32877 32877 47.749 26.212 1 3879500 34063 4885 22805 23226 39954 39954 887 0.003986104598880047 LPAPPHIDVMY 11 Oxidation (M) _LPAPPHIDVM(Oxidation (M))Y_ LPAPPHIDVM(1)Y LPAPPHIDVM(89)Y 0 0 1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.822021484375 2 634.820824 1267.62709 0.59077 0.00037503 0.4507 0.00028611 1.0415 0.00066114 634.8210931660708 67.341 0.45557 61.166 60.962 61.418 -6.1757 47 25 2 0 0 0 0.00047726 1 43847 43847 88.954 54.552 1 18296000 34064 4885 22805 23226 39955 39955 887 0.003986104598880047 LPAPPHIDVMY 11 Unmodified _LPAPPHIDVMY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 626.8226928710938 2 626.823366 1251.63218 NaN NaN NaN NaN NaN NaN NaN 76.336 1 70.16 69.66 70.66 -6.1757 0 0 0 0.049352 1 49932 49932 62.573 43.211 1 34065 4885 22805 23227 39956 39956 0.016429143224968357 LPAPPKIYF 9 Unmodified _LPAPPKIYF_ 0 0 0 ENST00000585605.1_1_19:5678827-5679734:-|nuORF;ENSG00000174917|ENST00000309324|MICOS13 ENST00000585605.1_1_19:5678827-5679734:-|nuORF ENST00000585605.1_1_19:5678827-5679734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3089599609375 2 523.307678 1044.6008 0.43215 0.00022615 0.176 9.2104E-05 0.60815 0.00031825 523.307986290591 69.235 0.28359 69.266 69.03 69.314 0.030922 27 13 3 0 0 0 0.038285 1 38028 38028 50.855 10.406 1 5731700 34066 8468 22806 23228 39957 39957 0.08028709350696772 LPAPPTQNM 9 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ LPAPPTQNM(1) LPAPPTQNM(120) 0 0 1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.74462890625 2 492.744585 983.474617 -0.5477 -0.00026988 0.046972 2.3145E-05 -0.50073 -0.00024673 492.7448328566184 30.611 0.38869 30.611 30.422 30.811 0 66 18 5 0 0 0 0.0041763 2 15938 15836;15938 120.45 65.677 1 60218000 34067 5321;16456 22807 23229 39958;39959 39959 975 -0.01778165216887828 LPAPPTQNM 9 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ LPAPPTQNM(1) LPAPPTQNM(96) 0 0 1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7453918457031 2 492.744585 983.474617 0.66282 0.0003266 -0.38711 -0.00019075 0.27571 0.00013585 492.744693810726 30.71 0.37761 30.608 30.365 30.743 -0.10269 43 14 4 0 0 0 0.0082485 2 15880 15880;15986 104.8 62.705 1 14495000 34068 5321;16456 22807 23229 39960;39961 39960 975 -0.01778165216887828 LPAPPTQNM 9 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ LPAPPTQNM(1) LPAPPTQNM(67) 0 0 1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.7447509765625 2 492.744585 983.474617 0.16285 8.0245E-05 0.54012 0.00026614 0.70298 0.00034639 492.74488992646616 30.478 0.23208 30.508 30.393 30.625 0.030106 17 10 2 0 0 0 0.016184 1 15930 15930 67.344 40.46 1 1439200 34069 5321;16456 22807 23229 39962 39962 975 -0.01778165216887828 LPAPPTQNM 9 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ LPAPPTQNM(1) LPAPPTQNM(120) 0 0 1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7461242675781 2 492.744585 983.474617 1.1992 0.00059092 -0.41314 -0.00020357 0.7861 0.00038735 492.7445795516129 36.022 0.52678 31.83 31.555 32.082 -4.1928 108 32 4 0 0 0 0.0041763 2 20845 20845;20975 120.45 74.429 1 149810000 34070 5321;16456 22807 23229 39963;39964 39963 975 -0.01778165216887828 LPAPPTQNM 9 Oxidation (M) _LPAPPTQNM(Oxidation (M))_ LPAPPTQNM(1) LPAPPTQNM(130) 0 0 1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.4821166992188 1 984.481893 983.474617 1.2466 0.0012273 -0.21047 -0.00020721 1.0362 0.0010201 984.4817407001145 36.027 0.28369 31.835 31.678 31.962 -4.1928 28 17 2 0 0 0 0.0032147 2 20941 20941;21065 125.53 50.6 1 3953100 34071 5321;16456 22807 23229 39965;39966 39965 975 -0.01778165216887828 LPAPPTQNM 9 Unmodified _LPAPPTQNM_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7462158203125 2 484.747127 967.479702 NaN NaN NaN NaN NaN NaN NaN 42.592 1 42.592 42.092 43.092 0 0 0 0 0.01764 1 23069 23069 81.613 47.511 1 34072 5321;16456 22807 23230 39967 39967 -0.005338613542676285 LPAPPTQNM 9 Unmodified _LPAPPTQNM_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7466125488281 2 484.747127 967.479702 0.26258 0.00012729 -2.1138 -0.0010247 -1.8512 -0.00089737 484.74603947392995 42.922 0.27206 42.611 42.505 42.777 -0.31039 20 12 2 0 0 0 0.0095811 1 22843 22843 81.613 47.511 1 5263000 34073 5321;16456 22807 23230 39968 39968 -0.005338613542676285 LPAPPTQNM 9 Unmodified _LPAPPTQNM_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7477722167969 2 484.747127 967.479702 0.84824 0.00041118 0.017173 8.3247E-06 0.86542 0.00041951 484.747222248413 49.868 0.52934 44.329 44.065 44.594 -5.5391 100 33 4 0 0 0 0.0086179 3 31213 31073;31213;31355 89.427 47.332 1 307510000 34074 5321;16456 22807 23230 39969;39970;39971 39970 -0.005338613542676285 LPAPPTQNM 9 Unmodified _LPAPPTQNM_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000184402|O75177-5|SS18L1 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 968.4873657226562 1 968.486979 967.479702 0.55784 0.00054027 -0.24912 -0.00024127 0.30872 0.00029899 968.4869810691433 49.872 0.33459 44.333 44.167 44.502 -5.5391 37 20 3 0 0 0 1.0053E-06 3 31151 31151;31222;31283 163.04 67.385 1 21532000 34075 5321;16456 22807 23230 39972;39973;39974 39972 -0.005338613542676285 LPAPQINPH 9 Unmodified _LPAPQINPH_ 0 0 0 nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR nc|ENSG00000130164|P01130-3|LDLR nc|ENSG00000130164|P01130-3|LDLR MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7755126953125 2 493.774534 985.534515 0.49349 0.00024367 -1.4981 -0.00073973 -1.0046 -0.00049606 493.7741549613592 40.381 0.19484 35.852 35.806 36.001 -4.5294 17 11 2 0 0 0 0.0095811 1 24113 24113 81.613 39.519 1 6647400 34076 4183 22808 23231 39975 39975 0.04116893508660269 LPAPSTKEY 9 Unmodified _LPAPSTKEY_ 0 0 0 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2658081054688 2 503.266207 1004.51786 -0.086488 -4.3527E-05 0.32286 0.00016248 0.23637 0.00011896 503.2664496632597 28.947 0.22283 28.947 28.82 29.043 0 23 10 3 0 0 0 0.085319 1 14961 14961 36.506 4.2007 1 2191000 34077 1343 22809 23232 39976 39976 0.015783478320372524 LPAPSWNVL 9 Unmodified _LPAPSWNVL_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7796936035156 2 498.779285 995.544017 1.7216 0.00085867 -1.2573 -0.00062711 0.46426 0.00023156 498.77885837230906 82.047 0.29019 82.109 81.954 82.244 0.061996 25 11 3 0 0 0 0.0086629 1 45377 45377 101.72 27.299 1 6650800 34078 2782 22810 23233 39977 39977 0.046066617941846744 LPAPSWNVL 9 Unmodified _LPAPSWNVL_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7798767089844 2 498.779285 995.544017 0.97287 0.00048525 0.8356 0.00041678 1.8085 0.00090203 498.7798244867149 90.124 0.66078 83.949 83.615 84.275 -6.1757 69 37 2 0 0 0 0.010877 3 59367 59367;59500;59638 77.984 29.37 1 30574000 34079 2782 22810 23233 39978;39979;39980 39978 0.046066617941846744 LPAPTIQSL 9 Unmodified _LPAPTIQSL_ 0 0 0 ENSG00000182704|ENST00000333090|TSKU ENSG00000182704|ENST00000333090|TSKU ENSG00000182704|ENST00000333090|TSKU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.279052734375 2 470.279118 938.543683 0.47228 0.0002221 0.19694 9.2616E-05 0.66922 0.00031472 470.2791787977204 64.845 0.30182 64.36 64.208 64.51 -0.48512 30 13 3 0 0 0 0.023164 1 35360 35360 60.39 5.616 1 2633100 34080 9078 22811 23234 39981 39981 0.07195242074340058 LPAPVKLIL 9 Unmodified _LPAPVKLIL_ 0 0 0 nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B nc|ENSG00000155158|Q5VTQ0-7|TTC39B nc|ENSG00000155158|Q5VTQ0-7|TTC39B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.333251953125 2 482.333696 962.652839 0.44797 0.00021607 0.39096 0.00018858 0.83893 0.00040465 482.3337727818957 78.441 0.37749 78.494 78.327 78.704 0.052452 30 15 3 0 0 0 0.042911 1 43332 43332 48.346 14.243 1 2964300 34081 6372 22812 23235 39982 39982 0.17001872764478776 LPAPVKLIL 9 Unmodified _LPAPVKLIL_ 0 0 0 nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF;nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B nc|ENSG00000155158|Q5VTQ0-7|TTC39B nc|ENSG00000155158|Q5VTQ0-7|TTC39B MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.3347778320312 2 482.333696 962.652839 1.3969 0.00067375 0.51609 0.00024893 1.913 0.00092268 482.3338288823227 96.738 0.27077 90.562 90.422 90.693 -6.1757 29 15 2 0 0 0 0.022193 1 64059 64059 61.357 21.4 1 15039000 34082 6372 22812 23235 39983 39983 0.17001872764478776 LPAPYQHQL 9 Unmodified _LPAPYQHQL_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7880249023438 2 533.787641 1065.56073 0.042492 2.2681E-05 1.6336 0.00087201 1.6761 0.00089469 533.7884950834829 39.885 0.24037 39.588 39.45 39.69 -0.29716 20 11 2 0 0 0 0.14602 1 21055 21055 28.487 5.3384 1 1024400 34083 8545 22813 23236 39984 39984 0.030571626801247476 LPAQATEY 8 Unmodified _LPAQATEY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 892.4384155273438 1 892.441074 891.433798 -0.56783 -0.00050676 -0.50423 -0.00045 -1.0721 -0.00095676 892.441183113677 33.761 0.21521 33.761 33.648 33.864 0 15 10 2 0 0 0 0.1875 1 17720 17720 74.929 30.522 1 1536600 34084 9918 22814 23237 39985 39985 -0.016261832648524432 LPAQATEYAF 10 Unmodified _LPAQATEYAF_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7813720703125 2 555.776939 1109.53933 0.51065 0.00028381 1.8021 0.0010016 2.3128 0.0012854 555.7784191051566 59.171 0.48575 58.68 58.391 58.876 -0.49079 41 22 3 0 0 0 0.20962 2 32161 32161;32264 32.786 5.901 1 4949400 34085 9918 22815 23238 39986;39987 39986 -0.01106267139243755 LPAQATEYAF 10 Unmodified _LPAQATEYAF_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.77685546875 2 555.776939 1109.53933 0.86981 0.00048342 -1.4946 -0.00083068 -0.62483 -0.00034726 555.7754369139705 66.182 0.38998 60.006 59.824 60.214 -6.1757 48 21 3 0 0 0 0.18021 1 43094 43094 36.127 19.014 1 30493000 34086 9918 22815 23238 39988 39988 -0.01106267139243755 LPAQATEYAF 10 Unmodified _LPAQATEYAF_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 555.776939 1109.53933 0.48153 0.00026762 4.6326 0.0025747 5.1142 0.0028423 555.7792080316049 58.57 0.27924 58.57 58.489 58.768 0 -0.055087 0.001293 NaN 32.786 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6522300 34087 9918 22815 23238 -0.01106267139243755 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.5533447265625 1 987.550959 986.543683 0.029963 2.959E-05 0.88492 0.0008739 0.91488 0.00090349 987.5516023263503 81.612 0.34223 81.612 81.439 81.782 0 39 17 3 0 0 0 0.042911 2 45235 45235;45333 48.346 21.462 1 1537400 34088 5789 22816 23239 39989;39990 39989 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 987.5517578125 1 987.550959 986.543683 0.55508 0.00054817 0.16805 0.00016596 0.72313 0.00071413 987.5510543947515 82.134 0.42702 81.639 81.392 81.819 -0.4952 53 16 4 0 0 0 0.0083938 2 44980 44886;44980 108 43.761 1 14270000 34089 5789 22816 23239 39991;39992 39992 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2791748046875 2 494.279118 986.543683 0.83107 0.00041078 0.13152 6.5007E-05 0.96259 0.00047579 494.27914793228945 82.089 0.71244 81.593 81.392 82.104 -0.4952 67 28 4 0 0 0 0.042911 2 44996 44895;44996 48.346 21.462 1 11918000 34090 5789 22816 23239 39993;39994 39994 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2804565429688 2 494.279118 986.543683 1.7482 0.0008641 0.58628 0.00028978 2.3345 0.0011539 494.2792394853087 81.466 0.30328 81.526 81.425 81.729 0.059929 18 11 2 0 0 0 0.12841 1 45058 45058 30.225 12.09 1 1360900 34091 5789 22816 23239 39995 39995 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20221201_MKP_PDAC_01 4 987.5505981445312 1 987.550959 986.543683 1.1473 0.001133 -0.51162 -0.00050525 0.63564 0.00062773 987.5503636571193 89.438 0.68389 83.262 82.986 83.67 -6.1757 90 37 3 0 0 0 0.0083938 4 58954 58954;58960;59078;59203 108 55.729 1 66007000 34092 5789 22816 23239 39996;39997;39998;39999 39996 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2783508300781 2 494.279118 986.543683 1.1865 0.00058648 -0.96031 -0.00047466 0.22624 0.00011182 494.2787837863968 89.495 0.82626 83.319 83.022 83.848 -6.1757 134 45 4 0 0 0 0.031062 2 58961 58961;59081 54.774 14.816 1 97650000 34093 5789 22816 23239 40000;40001 40000 0.049872420743326984 LPAQGLIEF 9 Unmodified _LPAQGLIEF_ 0 0 0 ENSG00000146676|ENST00000395699|PURB;ENSG00000185129|ENST00000331327|PURA ENSG00000146676|ENST00000395699|PURB ENSG00000146676|ENST00000395699|PURB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 494.279118 986.543683 0.15641 7.731E-05 0.45746 0.00022611 0.61387 0.00030342 494.2793072896673 81.617 0.29399 81.617 81.465 81.759 0 0.038268 0.00010899 NaN 48.346 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1094900 34094 5789 22816 23239 0.049872420743326984 LPAQLLRLY 9 Unmodified _LPAQLLRLY_ 0 0 0 ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2 ENST00000538682.5_1_11:62651934-62653989:+|nuORF ENST00000538682.5_1_11:62651934-62653989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8377075195312 2 543.837134 1085.65972 0.21831 0.00011873 1.558 0.00084728 1.7763 0.00096601 543.8382201202282 73.358 0.3147 73.402 73.23 73.545 0.043983 24 13 2 0 0 0 0.008678 1 40414 40414 88.904 0 1 3643500 34095 7700 22817 23240 40002 40002 0.1203118564505985 LPAQSAATL 9 Unmodified _LPAQSAATL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2475280761719 2 436.247818 870.481082 0.20523 8.9533E-05 0.52045 0.00022704 0.72568 0.00031658 436.24804054506023 39.836 0.29021 39.836 39.661 39.952 0 26 14 2 0 0 0 0.028475 1 21343 21343 56.177 18.001 1 2641600 34096 3108 22818 23241 40003 40003 0.04066096006135922 LPAQSAATL 9 Unmodified _LPAQSAATL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 871.4876098632812 1 871.488359 870.481082 0.13774 0.00012004 0.80594 0.00070236 0.94368 0.00082241 871.4887724490815 39.822 0.23228 39.822 39.7 39.932 0 16 11 2 0 0 0 0.025842 1 21358 21358 57.722 9.3761 1 820580 34097 3108 22818 23241 40004 40004 0.04066096006135922 LPAQTAVLP 9 Unmodified _LPAQTAVLP_ 0 0 0 REV__ENSG00000076201|ENST00000265562|PTPN23 REV__ENSG00000076201|ENST00000265562|PTPN23 MSMS AL20221201_MKP_PDAC_01 4 454.9334411621094 2 455.273835 908.533118 NaN NaN NaN NaN NaN NaN NaN 98.689 1 92.514 92.014 93.014 -6.1757 0 0 0 0.7453 1 65499 65499 7.9102 1.5561 1 + 34098 17584 22819 23242 40005 40005 0.07519259419893842 LPAQTSLEY 9 Unmodified _LPAQTSLEY_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2;ENST00000468890.1_1_10:115614631-115618462:+|nuORF ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2639465332031 2 511.263665 1020.51278 0.66367 0.00033931 0.11323 5.7888E-05 0.77689 0.0003972 511.26370015875233 47.479 0.66281 47.479 47.212 47.875 0 78 30 4 0 0 0 0.024882 2 25937 25937;26052 58.679 24.277 1 36790000 34099 9877 22820 23243 40006;40007 40006 0.003340439694284214 LPAQYVTQL 9 Unmodified _LPAQYVTQL_ 0 0 0 nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7892456054688 2 516.78985 1031.56515 -0.18398 -9.5081E-05 0.082954 4.287E-05 -0.10103 -5.2211E-05 516.7901586790942 60.651 0.27965 60.162 59.99 60.269 -0.48932 35 13 4 0 0 0 0.026094 1 32998 32998 57.471 11.45 1 7069700 34100 16472 22821 23244 40008 40008 0.05062627103052364 LPAQYVTQL 9 Unmodified _LPAQYVTQL_ 0 0 0 nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7903442382812 2 516.78985 1031.56515 0.6058 0.00031307 2.4185 0.0012499 3.0244 0.001563 516.7915648502645 67.734 0.52814 61.558 61.288 61.816 -6.1757 45 30 2 0 0 0 0.0088975 1 44076 44076 104.8 39.564 1 26721000 34101 16472 22821 23244 40009 40009 0.05062627103052364 LPARASRSL 9 Unmodified _LPARASRSL_ 0 0 0 ENST00000578711.1_1_17:7127960-7128230:+|nuORF;ENST00000578033.1_1_17:7127960-7128413:+|nuORF ENST00000578711.1_1_17:7127960-7128230:+|nuORF ENST00000578711.1_1_17:7127960-7128230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7941589355469 2 485.793258 969.571963 0.56248 0.00027325 1.3175 0.00064004 1.88 0.00091329 485.7939191189659 90.802 0.30646 90.308 90.187 90.493 -0.49457 34 24 2 0 0 0 0.48152 1 49734 49734 8.5933 0 1 3025100 34102 15538 22822 23245 40010 40010 0.08595984774274257 LPARCCLAL 9 2 Carbamidomethyl (C) _LPARC(Carbamidomethyl (C))C(Carbamidomethyl (C))LAL_ LPARC(1)C(1)LAL LPARC(74)C(74)LAL 0 2 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2838745117188 2 537.283354 1072.55216 0.72054 0.00038713 -0.18787 -0.00010094 0.53267 0.00028619 537.283557327193 52.492 0.3788 46.758 46.563 46.942 -5.7345 51 20 3 0 0 0 0.012148 2 33066 33066;33182 74.423 51.274 1 65590000 34103 16188 22823 23246 40011;40012 40011 1019;1020 0.01878149447634314 LPAREATQF 9 Unmodified _LPAREATQF_ 0 0 0 ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6;ENST00000476291.1_1_13:114550749-114566917:-|nuORF ENSG00000183087|ENST00000327773|GAS6 ENSG00000183087|ENST00000327773|GAS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7774047851562 2 516.777274 1031.53999 -0.75155 -0.00038839 0.37445 0.00019351 -0.3771 -0.00019488 516.777597571508 32.184 0.7551 32.184 31.619 32.374 0 80 37 4 0 0 0 0.021948 2 16737 16737;16835 61.602 15.581 1 29336000 34104 9113 22824 23247 40013;40014 40013 0.02548572300474916 LPAREATQF 9 Unmodified _LPAREATQF_ 0 0 0 ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6;ENST00000476291.1_1_13:114550749-114566917:-|nuORF ENSG00000183087|ENST00000327773|GAS6 ENSG00000183087|ENST00000327773|GAS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7777099609375 2 516.777274 1031.53999 -0.12701 -6.5634E-05 0.10921 5.6438E-05 -0.017794 -9.1958E-06 516.7776003492877 32.171 0.30971 32.042 31.866 32.176 -0.12915 30 11 3 0 0 0 0.040683 1 16714 16714 49.554 17.249 1 5019800 34105 9113 22824 23247 40015 40015 0.02548572300474916 LPAREATQF 9 Unmodified _LPAREATQF_ 0 0 0 ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6;ENST00000476291.1_1_13:114550749-114566917:-|nuORF ENSG00000183087|ENST00000327773|GAS6 ENSG00000183087|ENST00000327773|GAS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7783203125 2 516.777274 1031.53999 0.59667 0.00030834 0.28457 0.00014706 0.88124 0.0004554 516.7770534155587 36.586 0.76862 32.302 32.028 32.796 -4.2835 112 47 4 0 0 0 0.011291 3 21281 21281;21398;21527 76.825 22.051 1 128590000 34106 9113 22824 23247 40016;40017;40018 40016 0.02548572300474916 LPARFFSCM 9 Carbamidomethyl (C),Oxidation (M) _LPARFFSC(Carbamidomethyl (C))M(Oxidation (M))_ LPARFFSC(1)M LPARFFSCM(1) LPARFFSC(46)M LPARFFSCM(46) 0 1 1 nc|ENSG00000068903|Q8IXJ6-4|SIRT2;nc|ENSG00000068903|Q8IXJ6-5|SIRT2;nc|ENSG00000068903|Q8IXJ6-2|SIRT2;nc|ENSG00000068903|Q8IXJ6-3|SIRT2;ENSG00000068903|ENST00000249396|SIRT2 nc|ENSG00000068903|Q8IXJ6-4|SIRT2 nc|ENSG00000068903|Q8IXJ6-4|SIRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7681884765625 2 572.767537 1143.52052 0.53572 0.00030684 0.59915 0.00034317 1.1349 0.00065001 572.7676211615362 49.347 0.24158 49.303 49.134 49.376 -0.04369 17 11 2 0 0 0 0.047788 1 26635 26635 45.7 33.168 1 1378000 34107 990 22825 23248 40019 40019 88 161 -0.04549843306290313 LPARFFSCM 9 Carbamidomethyl (C),Oxidation (M) _LPARFFSC(Carbamidomethyl (C))M(Oxidation (M))_ LPARFFSC(1)M LPARFFSCM(1) LPARFFSC(56)M LPARFFSCM(56) 0 1 1 nc|ENSG00000068903|Q8IXJ6-4|SIRT2;nc|ENSG00000068903|Q8IXJ6-5|SIRT2;nc|ENSG00000068903|Q8IXJ6-2|SIRT2;nc|ENSG00000068903|Q8IXJ6-3|SIRT2;ENSG00000068903|ENST00000249396|SIRT2 nc|ENSG00000068903|Q8IXJ6-4|SIRT2 nc|ENSG00000068903|Q8IXJ6-4|SIRT2 MSMS AL20221201_MKP_PDAC_01 4 572.7686767578125 2 572.767537 1143.52052 NaN NaN NaN NaN NaN NaN NaN 55.41 1 49.489 48.989 49.989 -5.9211 0 0 0 0.054801 1 35273 35273 55.503 32.766 1 34108 990 22825 23248 40020 40020 88 161 -0.04549843306290313 LPARFYQAL 9 Unmodified _LPARFYQAL_ 0 0 0 ENSG00000155189|ENST00000285518|AGPAT5;ENST00000518327.1_1_8:6566222-6612655:+|nuORF ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2723388671875 2 539.805834 1077.59712 -0.0050809 -2.7427E-06 0.33007 0.00017817 0.32498 0.00017543 539.8059868376661 56.438 0.15142 56.37 56.287 56.438 -0.068737 12 7 2 0 0 0 0.19384 1 30684 30684 15.847 4.2069 1 2513600 34109 6373 22826 23249 40021 40021 0.06142039576843672 LPARIDAAY 9 Unmodified _LPARIDAAY_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2745666503906 2 495.274367 988.53418 0.10291 5.0968E-05 0.3625 0.00017954 0.46541 0.00023051 495.2745433282821 40.1 0.26273 40.1 39.973 40.236 0 23 12 3 0 0 0 0.18144 1 21554 21554 24.991 9.7425 1 3614700 34110 3914 22827 23250 40022 40022 0.03945473788780873 LPARIDAAY 9 Unmodified _LPARIDAAY_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.275146484375 2 495.274367 988.53418 0.82591 0.00040905 1.1672 0.0005781 1.9931 0.00098715 495.27489333817465 45.817 0.25357 40.862 40.698 40.951 -4.9549 29 16 2 0 0 0 0.044296 1 28196 28196 47.594 14.809 1 11936000 34111 3914 22827 23250 40023 40023 0.03945473788780873 LPARIDAAY 9 Unmodified _LPARIDAAY_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 495.274367 988.53418 0.71055 0.00035192 0.36846 0.00018249 1.079 0.00053441 495.2741103731046 40.498 0.19067 40.197 40.13 40.321 -0.30062 0.048792 3.5364E-06 NaN 24.991 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 787050 34112 3914 22827 23250 0.03945473788780873 LPARLNEAL 9 Unmodified _LPARLNEAL_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7957763671875 2 498.795466 995.57638 0.7413 0.00036976 -0.22193 -0.0001107 0.51937 0.00025906 498.7952899396819 46.452 0.31305 46.452 46.294 46.607 0 31 14 3 0 0 0 0.036857 1 25377 25377 51.63 11.672 1 8554100 34113 8699 22828 23251 40024 40024 0.07841449197167094 LPARLNEAL 9 Unmodified _LPARLNEAL_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7954406738281 2 498.795466 995.57638 0.47638 0.00023762 -0.30575 -0.00015251 0.17064 8.5113E-05 498.7952728629738 46.66 0.29271 46.323 46.169 46.462 -0.33664 26 14 2 0 0 0 0.011671 1 24960 24960 75.761 21.928 1 9799300 34114 8699 22828 23251 40025 40025 0.07841449197167094 LPARLNEAL 9 Unmodified _LPARLNEAL_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7962951660156 2 498.795466 995.57638 0.72686 0.00036255 -0.56812 -0.00028338 0.15873 7.9174E-05 498.79515320057305 52.226 0.40334 46.492 46.304 46.707 -5.7345 34 24 2 0 0 0 0.017075 1 32973 32973 66.457 16.524 1 53393000 34115 8699 22828 23251 40026 40026 0.07841449197167094 LPARLTLEF 9 Unmodified _LPARLTLEF_ 0 0 0 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7;ENST00000460444.5_1_3:11340169-11346011:+|nuORF nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3135986328125 2 530.313492 1058.61243 0.27197 0.00014423 -0.41561 -0.00022041 -0.14365 -7.6178E-05 530.3133692338971 72.151 0.31876 72.19 72.014 72.333 0.039024 22 15 2 0 0 0 0.017075 1 39710 39710 66.457 37.375 1 4764600 34116 9966 22829 23252 40027 40027 0.08546906374044738 LPARQVAL 8 Unmodified _LPARQVAL_ 0 0 0 ENST00000528293.1_1_19:17953965-17958870:-|nuORF;ENST00000526008.5_1_19:17949989-17958765:-|nuORF ENST00000528293.1_1_19:17953965-17958870:-|nuORF ENST00000528293.1_1_19:17953965-17958870:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2743530273438 2 434.27417 866.533787 1.3437 0.00058353 -0.94704 -0.00041128 0.39665 0.00017225 434.27391377394525 53.722 0.21679 47.917 47.849 48.066 -5.8042 24 13 3 0 0 0 0.50586 1 33997 33997 34.187 6.0141 1 19092000 34117 14805 22830 23253 40028 40028 0.09518098859598467 LPASCAPAY 9 Carbamidomethyl (C) _LPASC(Carbamidomethyl (C))APAY_ LPASC(1)APAY LPASC(51)APAY 0 1 0 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2266235351562 2 475.226028 948.437503 0.83587 0.00039723 -0.65925 -0.00031329 0.17662 8.3933E-05 475.22562264695233 42.36 0.22073 37.675 37.559 37.779 -4.6846 19 13 2 0 0 0 0.038285 1 25565 25565 50.855 20.218 1 7960600 34118 10269 22831 23254 40029 40029 926 -0.03877836762649167 LPASGQIAL 9 Unmodified _LPASGQIAL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 869.5103149414062 1 869.509094 868.501818 0.011577 1.0066E-05 0.83829 0.0007289 0.84987 0.00073897 869.5094778455126 56.556 0.30196 56.556 56.403 56.705 0 28 12 3 0 0 0 0.011968 2 31406 31406;31509 74.929 21.096 1 2194600 34119 8779 22832 23255 40030;40031 40030 0.062306863857997996 LPASGQIAL 9 Unmodified _LPASGQIAL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2580871582031 2 435.258185 868.501818 0.16782 7.3046E-05 -0.30985 -0.00013486 -0.14203 -6.1818E-05 435.2582481169186 57.05 0.32288 56.564 56.349 56.672 -0.48554 24 14 2 0 0 0 0.026094 1 30979 30979 57.471 23.369 1 2340900 34120 8779 22832 23255 40032 40032 0.062306863857997996 LPASGQIAL 9 Unmodified _LPASGQIAL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.5115966796875 1 869.509094 868.501818 -0.36941 -0.00032121 -0.40087 -0.00034856 -0.77028 -0.00066976 869.5084293101168 57.072 0.30279 56.587 56.369 56.672 -0.48554 24 13 2 0 0 0 0.30562 1 31041 31041 16.942 6.7589 1 3235000 34121 8779 22832 23255 40033 40033 0.062306863857997996 LPASGQIAL 9 Unmodified _LPASGQIAL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.25830078125 2 435.258185 868.501818 1.5608 0.00067933 -0.43798 -0.00019063 1.1228 0.0004887 435.2577980228136 64.245 0.47034 58.069 57.861 58.331 -6.1757 48 24 3 0 0 0 0.022193 2 41570 41570;41704 61.357 9.0891 1 20316000 34122 8779 22832 23255 40034;40035 40034 0.062306863857997996 LPASGQIAL 9 Unmodified _LPASGQIAL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 435.258185 868.501818 0.070886 3.0854E-05 1.2619 0.00054924 1.3328 0.00058009 435.25883875358113 56.567 0.34499 56.567 56.383 56.728 0 0.0015116 0.00032063 NaN 57.471 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2494700 34123 8779 22832 23255 0.062306863857997996 LPASINTAY 9 Unmodified _LPASINTAY_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.4996337890625 1 949.498923 948.491647 -0.087797 -8.3363E-05 0.75431 0.00071622 0.66652 0.00063286 949.4994223099851 47.374 0.26815 47.374 47.269 47.537 0 19 11 2 0 0 0 0.028475 1 25911 25911 56.177 30.778 1 2540000 34124 6508 22833 23256 40036 40036 0.01534078660574778 LPASINTAY 9 Unmodified _LPASINTAY_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2539672851562 2 475.2531 948.491647 0.51003 0.0002424 -0.50863 -0.00024173 0.0014051 6.678E-07 475.2533685380216 47.374 0.32499 47.374 47.212 47.537 0 27 14 2 0 0 0 0.026094 1 25979 25979 57.471 30.588 1 4612500 34125 6508 22833 23256 40037 40037 0.01534078660574778 LPASINTAY 9 Unmodified _LPASINTAY_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2542114257812 2 475.2531 948.491647 0.98993 0.00047047 2.0433 0.0009711 3.0333 0.0014416 475.2535452637388 54.91 0.37736 49.044 48.835 49.213 -5.8653 33 23 2 0 0 0 0.026094 2 34960 34816;34960 57.471 23.369 1 18132000 34126 6508 22833 23256 40038;40039 40039 0.01534078660574778 LPASINTAY 9 Unmodified _LPASINTAY_ 0 0 0 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 ENSG00000157227|ENST00000311852|MMP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 475.2531 948.491647 0.71964 0.00034201 0.66173 0.00031449 1.3814 0.0006565 475.2533418111005 47.709 0.18618 47.356 47.266 47.452 -0.3526 -0.0088789 0.00068347 NaN 57.471 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1431700 34127 6508 22833 23256 0.01534078660574778 LPASLISQIGY 11 Unmodified _LPASLISQIGY_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3305053710938 2 581.329339 1160.64412 0.88159 0.0005125 0.79554 0.00046247 1.6771 0.00097497 581.330067617752 80.419 0.32451 79.928 79.733 80.057 -0.49055 29 12 3 0 0 0 0.16973 1 44006 44006 34.402 17.289 1 1261000 34128 5932 22834 23257 40040 40040 0.07022854337333229 LPASLISQIGY 11 Unmodified _LPASLISQIGY_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.330810546875 2 581.329339 1160.64412 0.62467 0.00036314 -0.091985 -5.3474E-05 0.53269 0.00030967 581.3295772600892 79.816 0.49062 79.872 79.577 80.068 0.055801 57 19 4 0 0 0 0.00013798 2 44065 44065;44161 92.653 52.704 1 17575000 34129 5932 22834 23257 40041;40042 40041 0.07022854337333229 LPASLISQIGY 11 Unmodified _LPASLISQIGY_ 0 0 0 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3309326171875 2 581.329339 1160.64412 1.1551 0.00067147 -0.47121 -0.00027393 0.68385 0.00039754 581.3296062435935 88.405 0.57331 82.229 81.939 82.512 -6.1757 54 31 2 0 0 0 0.01364 3 58200 58200;58327;58512 63.961 33.324 1 37673000 34130 5932 22834 23257 40043;40044;40045 40043 0.07022854337333229 LPASNFNSL 9 Unmodified _LPASNFNSL_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7510681152344 2 481.750724 961.486896 0.34338 0.00016542 0.17883 8.6153E-05 0.52221 0.00025158 481.7508930083073 54.978 0.24137 54.5 54.45 54.691 -0.47798 18 11 2 0 0 0 0.34999 1 29830 29830 14.838 3.198 1 1142900 34131 4994 22835 23258 40046 40046 0.0046119451779986775 LPASPRARL 9 Unmodified _LPASPRARL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MSMS AL20221201_MKP_PDAC_01 4 490.8047485351562 2 490.803626 979.592698 NaN NaN NaN NaN NaN NaN NaN 30.195 1 26.698 26.198 27.198 -3.497 0 0 0 0.04157 1 17025 17025 48.346 14.243 1 34132 3263 22836 23259 40047 40047 0.10208575153933452 LPASPSSAHS 10 Unmodified _LPASPSSAHS_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2391357421875 2 477.237981 952.461409 -0.095433 -4.5544E-05 2.3803 0.001136 2.2849 0.0010904 477.23923419633337 56.74 0.31709 56.255 56.136 56.453 -0.48554 25 15 2 0 0 0 0.52888 1 30854 30854 14.838 0.25658 1 1822100 34133 3961 22837 23260 40048 40048 -0.016722800046181874 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4921875 1 870.49311 869.485833 -0.39085 -0.00034023 0.14359 0.00012499 -0.24727 -0.00021524 870.4930084357447 55.276 0.35991 55.276 55.077 55.437 0 35 15 3 0 0 0 0.00069393 1 30752 30752 141.83 49.004 1 7014600 34134 8124 22838 23261 40049 40049 0.0458698014890615 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7503051757812 2 435.750193 869.485833 -0.32455 -0.00014142 -0.35959 -0.00015669 -0.68414 -0.00029811 435.7499668857825 55.265 0.38433 55.265 55.077 55.461 0 30 16 2 0 0 0 0.052168 1 30783 30783 44.407 2.3125 1 7924800 34135 8124 22838 23261 40050 40050 0.0458698014890615 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.4927978515625 1 870.49311 869.485833 -0.63955 -0.00055672 0.27294 0.0002376 -0.36661 -0.00031913 870.4932355595349 55.825 0.38599 55.347 55.152 55.538 -0.47798 52 18 4 0 0 0 2.6046E-06 2 30331 30224;30331 156.16 51.357 1 22350000 34136 8124 22838 23261 40051;40052 40052 0.0458698014890615 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.75 2 435.750193 869.485833 -0.073428 -3.1996E-05 -0.12885 -5.6145E-05 -0.20227 -8.8141E-05 435.75002836215725 55.812 0.38599 55.334 55.152 55.538 -0.47798 48 18 3 0 0 0 0.0094915 1 30242 30242 81.864 21.474 1 15860000 34137 8124 22838 23261 40053 40053 0.0458698014890615 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.493896484375 1 870.49311 869.485833 0.70962 0.00061772 0.19671 0.00017124 0.90633 0.00078896 870.4932159728005 63.302 0.53447 57.127 56.857 57.391 -6.1757 72 30 3 0 0 0 0.00069393 3 41053 40782;40913;41053 141.83 60.214 1 76648000 34138 8124 22838 23261 40054;40055;40056 40056 0.0458698014890615 LPASPSVSL 9 Unmodified _LPASPSVSL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7505187988281 2 435.750193 869.485833 0.92683 0.00040386 0.046851 2.0415E-05 0.97368 0.00042428 435.7501866603059 63.282 0.56966 57.106 56.857 57.427 -6.1757 77 32 3 0 0 0 0.0086179 3 40914 40788;40914;41056 101.72 23.738 1 141800000 34139 8124 22838 23261 40057;40058;40059 40058 0.0458698014890615 LPASQLESR 9 Unmodified _LPASQLESR_ 0 0 0 ENSG00000275004|ENST00000626650|ZNF280B ENSG00000275004|ENST00000626650|ZNF280B ENSG00000275004|ENST00000626650|ZNF280B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7764892578125 2 500.774731 999.534909 NaN NaN NaN NaN NaN NaN NaN 58.91 1 58.419 57.919 58.919 -0.49079 0 0 0 0.29524 1 32043 32043 25.399 7.2643 1 34140 10902 22839 23262 40060 40060 0.03512268437862076 LPASRDSPL 9 Unmodified _LPASRDSPL_ 0 0 0 nc|ENSG00000047644|Q9ULE0-2|WWC3;ENSG00000047644|ENST00000380861|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2640075683594 2 478.263999 954.513445 -0.26032 -0.0001245 -0.20412 -9.7621E-05 -0.46444 -0.00022212 478.2638712563409 30.801 0.3246 30.801 30.607 30.932 0 26 15 2 0 0 0 0.094149 1 15970 15970 34.402 0 1 3477400 34141 690 22840 23263 40061 40061 0.03436883409131042 LPASVHPQL 9 Unmodified _LPASVHPQL_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2769165039062 2 481.276909 960.539266 -0.033236 -1.5996E-05 -0.28838 -0.00013879 -0.32161 -0.00015478 481.27656842215873 42.095 0.21726 41.789 41.641 41.859 -0.30682 15 10 2 0 0 0 0.0030184 1 22336 22336 126.57 65.208 1 15548000 34142 7952 22841 23264 40062 40062 0.05741777651417124 LPASVHPQL 9 Unmodified _LPASVHPQL_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2772216796875 2 481.276909 960.539266 0.9218 0.00044364 -0.1055 -5.0777E-05 0.8163 0.00039287 481.2765820842267 47.12 0.47179 42.04 41.866 42.337 -5.0805 56 35 2 0 0 0 0.028475 1 29291 29291 56.177 14.082 1 29694000 34143 7952 22841 23264 40063 40063 0.05741777651417124 LPASVSLLA 9 Unmodified _LPASVSLLA_ 0 0 0 ENST00000397981.7_1_19:7977600-7977795:+|nuORF ENST00000397981.7_1_19:7977600-7977795:+|nuORF ENST00000397981.7_1_19:7977600-7977795:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.5299072265625 1 870.529495 869.522219 -0.10971 -9.5506E-05 1.0867 0.00094605 0.97704 0.00085054 870.5308402385815 71.277 0.24417 70.8 70.705 70.949 -0.47736 17 10 2 0 0 0 0.078417 1 38986 38986 38.151 2.107 1 887360 34144 12837 22842 23265 40064 40064 0.08223857045618388 LPATAPTSF 9 Unmodified _LPATAPTSF_ 0 0 0 ENSG00000197070|ENST00000371421|ARRDC1;ARRDC1|p.E101K|1|0.2|ENSG00000197070|chr9:137613635-137613635|G/A|missense_variant;ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7425231933594 2 452.742368 903.470183 -0.14955 -6.7708E-05 0.44894 0.00020325 0.29939 0.00013555 452.7425655958291 51.301 0.19099 50.887 50.758 50.949 -0.41351 16 9 3 0 0 0 0.2001 1 27626 27626 23.148 0 1 2189100 34145 9904 22843 23266 40065 40065 0.014586936318551125 LPATAPTSF 9 Unmodified _LPATAPTSF_ 0 0 0 ENSG00000197070|ENST00000371421|ARRDC1;ARRDC1|p.E101K|1|0.2|ENSG00000197070|chr9:137613635-137613635|G/A|missense_variant;ENST00000466367.5_1_9:140500199-140508236:+|nuORF;ENST00000491911.5_1_9:140507208-140508236:+|nuORF ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.742431640625 2 452.742368 903.470183 1.5497 0.00070161 -1.0362 -0.00046914 0.51347 0.00023247 452.7415723350536 58.61 0.4812 52.536 52.336 52.817 -6.0745 41 26 2 0 0 0 0.019979 1 37546 37546 63.563 21.468 1 11232000 34146 9904 22843 23266 40066 40066 0.014586936318551125 LPATGILAF 9 Unmodified _LPATGILAF_ 0 0 0 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 902.5350341796875 1 902.534581 901.527304 -0.097143 -8.7675E-05 1.0913 0.00098493 0.99415 0.00089726 902.5356770979919 88.735 0.34861 88.23 88.046 88.394 -0.50423 26 14 2 0 0 0 0.41742 1 48471 48471 11.64 0.81637 1 984870 34147 10247 22844 23267 40067 40067 0.07260160908231228 LPATGILAF 9 Unmodified _LPATGILAF_ 0 0 0 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 902.535400390625 1 902.534581 901.527304 1.1584 0.0010455 0.32051 0.00028927 1.4789 0.0013347 902.5346252824603 97.878 0.40056 91.703 91.614 92.014 -6.1757 35 25 2 0 0 0 0.0086179 1 64938 64938 89.427 38.572 1 11437000 34148 10247 22844 23267 40068 40068 0.07260160908231228 LPATILTSL 9 Unmodified _LPATILTSL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7896423339844 2 464.789318 927.564084 0.36736 0.00017074 0.24472 0.00011374 0.61208 0.00028449 464.78938514208437 86.725 0.32618 86.221 86.044 86.37 -0.50318 23 12 2 0 0 0 0.14602 1 47424 47424 28.487 5.3384 1 1008600 34149 4807 22845 23268 40069 40069 0.09740412734140591 LPATILTSL 9 Unmodified _LPATILTSL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5733032226562 1 928.57136 927.564084 0.41707 0.00038728 0.26173 0.00024304 0.67881 0.00063032 928.5709952122812 86.748 0.22849 86.245 86.115 86.344 -0.50318 12 8 2 0 0 0 0.052168 1 47443 47443 44.407 15.92 1 463820 34150 4807 22845 23268 40070 40070 0.09740412734140591 LPATLSIAL 9 Unmodified _LPATLSIAL_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 898.5609741210938 1 898.560795 897.553519 -0.13977 -0.00012559 1.8 0.0016174 1.6603 0.0014918 898.5622353054714 85.743 0.2515 85.241 85.143 85.395 -0.5015 18 10 2 0 0 0 0.12841 1 46915 46915 30.225 7.0764 1 657340 34151 1235 22846 23269 40071 40071 0.10064430079705744 LPATLSIAL 9 Unmodified _LPATLSIAL_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 898.56201171875 1 898.560795 897.553519 0.78579 0.00070608 0.20845 0.0001873 0.99424 0.00089339 898.5608587781932 93.868 0.66818 87.692 87.395 88.064 -6.1757 55 38 2 0 0 0 0.010877 2 62101 62101;62233 77.984 24.409 1 7898000 34152 1235 22846 23269 40072;40073 40072 0.10064430079705744 LPATLSIAL 9 Unmodified _LPATLSIAL_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 449.7850036621094 2 449.784036 897.553519 NaN NaN NaN NaN NaN NaN NaN 93.914 1 87.739 87.239 88.239 -6.1757 0 0 0 0.096036 1 62194 62194 44.407 6.2558 1 34153 1235 22846 23269 40074 40074 0.10064430079705744 LPATRGYAL 9 Unmodified _LPATRGYAL_ 0 0 0 ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2765808105469 2 481.276909 960.539266 0.087376 4.2052E-05 -0.15143 -7.2879E-05 -0.064052 -3.0827E-05 481.27691364082995 41.348 0.28439 41.045 40.887 41.171 -0.30304 32 13 3 0 0 0 0.047788 1 21888 21888 45.7 1.8413 1 7926400 34154 10470 22847 23270 40075 40075 0.05741777651417124 LPATRGYAL 9 Unmodified _LPATRGYAL_ 0 0 0 ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2773132324219 2 481.276909 960.539266 0.65995 0.00031762 1.0331 0.00049723 1.6931 0.00081485 481.2774268181236 46.121 0.37257 41.166 40.983 41.355 -4.9549 56 24 3 0 0 0 0.047788 1 28354 28354 45.7 3.6051 1 36679000 34155 10470 22847 23270 40076 40076 0.05741777651417124 LPATRGYAL 9 Unmodified _LPATRGYAL_ 0 0 0 ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENST00000460049.6_1_14:24028960-24033376:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 481.276909 960.539266 0.087376 4.2052E-05 -0.15143 -7.2879E-05 -0.064052 -3.0827E-05 481.27691364082995 41.348 0.28439 41.045 40.887 41.171 -0.30304 -0.044442 -0.00058276 NaN 45.7 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 7926400 34156 10470 22847 23270 0.05741777651417124 LPATSVIITF 10 Unmodified _LPATSVIITF_ 0 0 0 nc|ENSG00000100626|Q8N428-2|GALNT16;ENSG00000100626|ENST00000448469|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 nc|ENSG00000100626|Q8N428-2|GALNT16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.314697265625 2 531.3157 1060.61685 0.077324 4.1083E-05 1.2967 0.00068895 1.374 0.00073003 531.3163526508578 70.319 0.19788 69.84 69.716 69.914 -0.47903 18 8 3 0 0 0 0.1942 1 38434 38434 34.402 9.0024 1 1167300 34157 1857 22848 23271 40077 40077 0.08896370796924202 LPAVESTTY 9 Unmodified _LPAVESTTY_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.493408203125 1 980.493504 979.486227 0.39089 0.00038327 -0.041694 -4.0881E-05 0.3492 0.00034239 980.4934100687594 43.082 0.27528 43.082 42.947 43.222 0 27 13 3 0 0 0 0.023164 2 23335 23335;23444 60.39 31.903 1 10158000 34158 2266 22849 23272 40078;40079 40078 -0.004336449219181304 LPAVESTTY 9 Unmodified _LPAVESTTY_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7504272460938 2 490.75039 979.486227 0.4809 0.000236 -0.22543 -0.00011063 0.25547 0.00012537 490.75042840044455 43.111 0.2953 43.111 42.947 43.242 0 28 14 3 0 0 0 0.045537 1 23345 23345 46.921 25.174 1 23665000 34159 2266 22849 23272 40080 40080 -0.004336449219181304 LPAVESTTY 9 Unmodified _LPAVESTTY_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.4964599609375 1 980.493504 979.486227 0.96335 0.00094456 -0.22417 -0.0002198 0.73917 0.00072475 980.4934941464846 50.522 0.27804 44.983 44.839 45.117 -5.5391 32 17 2 0 0 0 0.0088975 2 31637 31637;31777 104.8 62.705 1 21811000 34160 2266 22849 23272 40081;40082 40081 -0.004336449219181304 LPAVESTTY 9 Unmodified _LPAVESTTY_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7507629394531 2 490.75039 979.486227 1.0312 0.00050607 -0.38779 -0.00019031 0.64343 0.00031576 490.75031272174397 50.525 0.40503 44.986 44.775 45.18 -5.5391 46 25 2 0 0 0 0.045537 2 31645 31645;31784 46.921 29.834 1 47731000 34161 2266 22849 23272 40083;40084 40083 -0.004336449219181304 LPAVGEHVF 9 Unmodified _LPAVGEHVF_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.912841796875 2 484.763635 967.512717 0.18504 8.9699E-05 -0.0084005 -4.0722E-06 0.17664 8.5627E-05 484.763305404034 52.499 0.26401 52.499 52.332 52.596 0 23 11 3 0 0 0 0.081537 1 29036 29036 42.095 13.013 1 7752800 34162 5359 22850 23273 40085 40085 0.027660887600859496 LPAVGEHVF 9 Unmodified _LPAVGEHVF_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7640991210938 2 484.763635 967.512717 0.44995 0.00021812 0.71894 0.00034851 1.1689 0.00056663 484.763636480129 52.989 0.30311 52.538 52.4 52.703 -0.45173 24 15 2 0 0 0 0.026094 1 28706 28706 57.471 13.613 1 7715200 34163 5359 22850 23273 40086 40086 0.027660887600859496 LPAVGEHVF 9 Unmodified _LPAVGEHVF_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7637329101562 2 484.763635 967.512717 1.3976 0.00067751 -1.2021 -0.00058273 0.19551 9.4777E-05 484.76268265514426 59.052 0.36107 52.978 52.756 53.117 -6.0745 43 19 3 0 0 0 0.026094 1 37826 37826 57.471 13.613 1 38677000 34164 5359 22850 23273 40087 40087 0.027660887600859496 LPAVHHHH 8 Unmodified _LPAVHHHH_ 0 0 0 nc|nan|P58505-3|C21orf58;ENSG00000160298|ENST00000291691|C21orf58 nc|nan|P58505-3|C21orf58 nc|nan|P58505-3|C21orf58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2552795410156 2 474.25156 946.488568 0.95209 0.00045153 0.88277 0.00041865 1.8349 0.00087018 474.2519576503074 51.153 0.52459 45.504 45.28 45.804 -5.649 62 31 3 0 0 0 0.5245 1 32085 32085 32.454 7.7798 1 66350000 34165 6715 22851 23274 40088 40088 0.01318293117083158 LPAVITTCLAL 11 Unmodified _LPAVITTCLAL_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8323364257812 2 557.83066 1113.64677 1.0796 0.00060222 1.8619 0.0010387 2.9415 0.0016409 557.8321362485735 99.976 0.1437 93.8 93.74 93.884 -6.1757 14 9 2 0 0 0 0.54936 1 66786 66786 13.906 0.39817 1 22205000 34166 1125;8419 22852 23275 40089 40089 0.09448986470624732 LPAVLNPRY 9 Unmodified _LPAVLNPRY_ 0 0 0 nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A nc|ENSG00000110002|O00534-4|VWA5A nc|ENSG00000110002|O00534-4|VWA5A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7819213867188 2 521.805834 1041.59712 -0.28578 -0.00014912 -1.4369 -0.0007498 -1.7227 -0.00089892 521.804921810387 51.437 0.19305 51.383 51.286 51.479 -0.053875 13 9 2 0 0 0 0.16418 1 27818 27818 19.257 6.2145 1 843650 34167 2689 22853 23276 40090 40090 0.0779803957684635 LPAVSWKM 8 Oxidation (M) _LPAVSWKM(Oxidation (M))_ LPAVSWKM(1) LPAVSWKM(61) 0 0 1 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2543640136719 2 474.254588 946.494624 -0.013243 -6.2803E-06 -0.41414 -0.00019641 -0.42738 -0.00020269 474.2542958350495 45.363 0.23608 45.335 45.185 45.421 -0.028011 18 11 2 0 0 0 0.25522 1 24362 24362 61.357 20.909 1 7361400 34168 671 22854 23277 40091 40091 103 0.01923630513738317 LPAVSWKM 8 Unmodified _LPAVSWKM_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2574157714844 2 466.257131 930.499709 0.18388 8.5736E-05 0.48521 0.00022623 0.66909 0.00031197 466.25741195643684 65.499 0.52417 59.324 59.089 59.613 -6.1757 58 29 3 0 0 0 0.078546 2 42461 42461;42597 112.59 59.9 1 30415000 34169 671 22854 23278 40092;40093 40092 0.03167934376347148 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.55615234375 1 974.55571 973.548434 0.14377 0.00014011 0.47517 0.00046308 0.61893 0.00060319 974.5562853131631 77.966 0.37737 77.966 77.794 78.172 0 30 16 2 0 0 0 0.068777 3 43366 43274;43282;43366 40.449 11.962 1 2268600 34170 4848 22855 23279 40094;40095;40096 40096 0.0606012621709624 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7813110351562 2 487.781493 973.548434 0.2258 0.00011014 1.1325 0.0005524 1.3583 0.00066255 487.7821942319724 78.004 0.60232 78.004 77.794 78.397 0 51 26 3 0 0 0 0.040472 1 43335 43335 49.669 24.995 1 3129300 34171 4848 22855 23279 40097 40097 0.0606012621709624 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5568237304688 1 974.55571 973.548434 -0.36419 -0.00035492 0.4856 0.00047324 0.1214 0.00011832 974.5562322874911 78.463 0.40877 77.977 77.757 78.165 -0.48596 47 18 3 0 0 0 0.012158 3 43014 42908;42935;43014 74.396 17.855 1 7813400 34172 4848 22855 23279 40098;40099;40100 40100 0.0606012621709624 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7814636230469 2 487.781493 973.548434 -0.10113 -4.9329E-05 1.0106 0.00049295 0.90948 0.00044363 487.78191000562674 78.448 0.61592 77.962 77.778 78.394 -0.48595 55 26 3 0 0 0 0.040472 2 42934 42934;43047 49.669 24.995 1 8079000 34173 4848 22855 23279 40101;40102 40101 0.0606012621709624 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.556396484375 1 974.55571 973.548434 0.82457 0.00080359 -0.0018839 -1.8359E-06 0.82269 0.00080175 974.5550810191642 86.14 0.55677 79.964 79.709 80.266 -6.1757 56 30 2 0 0 0 0.0081063 3 56758 56628;56758;56882 93.883 33.494 1 26676000 34174 4848 22855 23279 40103;40104;40105 40104 0.0606012621709624 LPAVVVETF 9 Unmodified _LPAVVVETF_ 0 0 0 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;ENST00000462958.5_1_2:127806104-127810019:-|nuORF nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7815856933594 2 487.781493 973.548434 1.1512 0.00056152 1.2537 0.00061154 2.4049 0.0011731 487.78212939051394 86.124 1.0371 79.948 79.694 80.731 -6.1757 116 56 3 0 0 0 0.040472 2 56645 56645;56772 49.669 30.23 1 65315000 34175 4848 22855 23279 40106;40107 40106 0.0606012621709624 LPAWPHRGL 9 Unmodified _LPAWPHRGL_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5 nc|ENSG00000130305|Q96P11-5|NSUN5 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.79833984375 2 523.798343 1045.58213 0.99529 0.00052133 -0.68315 -0.00035783 0.31214 0.0001635 523.7981243982608 48.593 0.28336 43.197 43.054 43.337 -5.3961 23 16 2 0 0 0 0.026094 1 30278 30278 57.471 28.985 1 11760000 34176 4201 22856 23280 40108 40108 0.061165924995066234 LPAWVFSQQR 10 Unmodified _LPAWVFSQQR_ 0 0 0 ENST00000488141.5_1_22:37887199-37892645:-|nuORF ENST00000488141.5_1_22:37887199-37892645:-|nuORF ENST00000488141.5_1_22:37887199-37892645:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 616.5997314453125 2 616.332747 1230.65094 NaN NaN NaN NaN NaN NaN NaN 100.19 1 94.017 93.517 94.517 -6.1757 0 0 0 0.81521 1 66938 66938 11.64 0.14559 1 34177 14216 22857 23281 40109 40109 0.04484212008560462 LPAWYTYLY 9 Unmodified _LPAWYTYLY_ 0 0 0 REV__ENST00000590271.5_1_18:76847676-76954399:+|nuORF REV__ENST00000590271.5_1_18:76847676-76954399:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2991333007812 2 595.30005 1188.58555 0.27648 0.00016459 1.213 0.0007221 1.4895 0.00088669 596.3050362087349 66.564 0.20677 66.081 65.964 66.171 -0.48324 27 9 4 0 0 0 0.39863 1 36359 36359 12.532 0 1 1316300 + 34178 22112 22858 23282 40110 40110 -0.0012020223714444 LPAYGRTTL 9 Unmodified _LPAYGRTTL_ 0 0 0 nc|ENSG00000158856|Q08495-3|DMTN;nc|ENSG00000158856|Q08495-4|DMTN;nc|ENSG00000158856|Q08495-2|DMTN;ENSG00000158856|ENST00000358242|DMTN nc|ENSG00000158856|Q08495-3|DMTN nc|ENSG00000158856|Q08495-3|DMTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2817077636719 2 496.282192 990.549831 0.69879 0.0003468 -0.28485 -0.00014137 0.41394 0.00020543 496.28181648663855 40.589 0.16591 40.286 40.171 40.337 -0.30304 12 7 2 0 0 0 0.30202 1 21460 21460 17.113 2.2746 1 1801000 34179 6613 22859 23283 40111 40111 0.054177603058633395 LPAYKSEL 8 Unmodified _LPAYKSEL_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1;REV__nc|ENSG00000273749|Q7L576-2|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 921.7330932617188 1 920.50876 919.501483 0.38839 0.00035751 0.29559 0.00027209 0.68397 0.0006296 920.508359030377 82.5 0.30988 82.005 81.794 82.104 -0.4952 19 12 2 0 0 0 0.80044 1 45199 45199 6.3541 0 1 717470 + 34180 24637;30002 22860 23284 40112 40112 0.038512666659471506 LPCASGGIFVL 11 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))ASGGIFVL_ LPC(1)ASGGIFVL LPC(59)ASGGIFVL 0 1 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000526870.1_3_11:47861380-47861614:-|nuORF ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.305419921875 2 567.30481 1132.59507 0.81435 0.00046198 0.013751 7.8012E-06 0.8281 0.00046979 567.304794848025 99.57 0.26395 93.394 93.261 93.525 -6.1757 46 16 4 0 0 0 0.018566 1 66410 66410 58.679 33.28 1 137980000 34181 583 22861 23285 40113 40113 40 0.03407242776734165 LPCEVKVVA 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))EVKVVA_ LPC(1)EVKVVA LPC(50)EVKVVA 0 1 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7864685058594 2 507.786253 1013.55795 0.555 0.00028182 -0.27283 -0.00013854 0.28217 0.00014328 507.7858876033429 46.983 0.37515 41.902 41.764 42.139 -5.0805 60 39 2 0 0 0 0.040683 1 29122 29122 49.554 9.6046 1 26693000 34182 4259 22862 23286 40114 40114 429 0.051715712309714945 LPCGASVIL 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))GASVIL_ LPC(1)GASVIL LPC(82)GASVIL 0 1 0 nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.5132446289062 1 929.512465 928.505189 0.8654 0.0008044 -0.37423 -0.00034786 0.49117 0.00045655 929.5112535386085 73.225 0.66447 67.049 66.562 67.226 -6.1757 52 32 3 0 0 0 0.0094915 4 47878 47633;47685;47878;47998 81.864 37.457 1 16039000 34183 4243 22863 23287 40115;40116;40117;40118 40117 422 0.03807613168169155 LPCGELHEI 9 Unmodified _LPCGELHEI_ 0 0 0 ENST00000280969.9_1_5:162930152-162930257:+|nuORF ENST00000280969.9_1_5:162930152-162930257:+|nuORF ENST00000280969.9_1_5:162930152-162930257:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7537536621094 2 505.75241 1009.49027 NaN NaN NaN NaN NaN NaN NaN 43.485 1 43.485 42.985 43.985 0 0 0 0 0.15618 1 23620 23620 36.044 1.8569 1 34184 11410 22864 23288 40119 40119 -0.014098786998374635 LPCGFLFL 8 Unmodified _LPCGFLFL_ 0 0 0 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MSMS AL20221201_MKP_PDAC_01 4 455.2492370605469 2 455.248775 908.482997 NaN NaN NaN NaN NaN NaN NaN 88.225 1 82.049 81.549 82.549 -6.1757 0 0 0 0.94749 1 58197 58197 11.114 0 1 + 34185 17875 22865 23289 40120 40120 0.025094334903769777 LPCGPAPL 8 Unmodified _LPCGPAPL_ 0 0 0 REV__ENST00000469093.1_1_9:137623973-137624162:+|nuORF REV__ENST00000469093.1_1_9:137623973-137624162:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 767.413330078125 1 767.412023 766.404746 1.2397 0.0009514 -0.58097 -0.00044585 0.65877 0.00050555 767.4114952702145 94.539 0.66831 88.363 88.135 88.803 -6.1757 48 38 2 0 0 0 0.5245 1 62623 62623 32.454 8.2437 1 10597000 + 34186 27461 22866 23290 40121 40121 0.012200009051639427 LPCHLFPTM 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))HLFPTM_ LPC(1)HLFPTM LPC(64)HLFPTM 0 1 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2;ENST00000480110.5_1_6:26444219-26444576:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;ENSG00000111801|ENST00000244519|BTN3A3;nc|ENSG00000111801|O00478-2|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000111801|ENST00000244519|BTN3A3 nc|ENSG00000026950|O00481-4|BTN3A1 MSMS AL20221201_MKP_PDAC_01 4 558.277099609375 2 558.272455 1114.53036 NaN NaN NaN NaN NaN NaN NaN 77.783 1 71.607 71.107 72.107 -6.1757 0 0 0 0.036587 1 50886 50886 63.563 23.606 1 34187 563;2829 22867 23291 40122 40122 39 -0.022326553009179406 LPCIENAVLAL 11 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))IENAVLAL_ LPC(1)IENAVLAL LPC(46)IENAVLAL 0 1 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5;ENST00000481145.1_1_1:89729385-89732242:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8367309570312 2 606.836474 1211.65839 0.78776 0.00047804 -2.6885 -0.0016315 -1.9007 -0.0011534 607.3361482292241 99.99 0.22075 93.814 93.703 93.924 -6.1757 20 15 2 0 0 0 0.073778 1 66815 66815 45.74 25.325 1 17688000 34188 6326 22868 23292 40123 40123 623 0.06103183493951292 LPCKDAPEL 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))KDAPEL_ LPC(1)KDAPEL LPC(93)KDAPEL 0 1 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4;ENST00000572351.1_1_17:79555189-79563202:-|nuORF ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2677612304688 2 521.765517 1041.51648 0.71682 0.00037401 1.1424 0.00059607 1.8592 0.00097008 521.7659579153215 40.522 0.65449 35.993 35.685 36.339 -4.5294 123 41 4 0 0 0 0.0081887 1 24043 24043 93.166 43.233 1 88439000 34189 9054 22869 23293 40124 40124 849 -0.0026160952838836238 LPCKLGIWF 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))KLGIWF_ LPC(1)KLGIWF LPC(82)KLGIWF 0 1 0 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3118286132812 2 567.312438 1132.61032 0.7334 0.00041607 -0.5601 -0.00031775 0.1733 9.8317E-05 567.3127785350606 98.615 0.15633 92.439 92.378 92.535 -6.1757 18 11 2 0 0 0 0.0095811 1 65449 65449 81.613 37.755 1 37071000 34190 4853 22870 23294 40125 40125 497 0.04932154364564667 LPCLDESRF 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))LDESRF_ LPC(1)LDESRF LPC(44)LDESRF 0 1 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7730102539062 2 568.773874 1135.53319 1.5757 0.00089623 -1.022 -0.00058128 0.55374 0.00031495 568.7735541813247 58.727 0.46379 52.653 52.387 52.851 -6.0745 78 25 4 0 0 0 0.05483 1 37533 37533 43.772 13.136 1 132620000 34191 1951 22871 23295 40126 40126 193 -0.029151086424235473 LPCLELPTY 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))LELPTY_ LPC(1)LELPTY LPC(54)LELPTY 0 1 0 ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F ENSG00000105849|ENST00000222567|POLR1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7852783203125 2 553.283543 1104.55253 0.92469 0.00051161 0.65935 0.00036481 1.584 0.00087642 553.2833331572969 90.082 0.40641 83.906 83.685 84.091 -6.1757 33 22 2 0 0 0 0.03327 1 59465 59465 53.576 13.618 1 11233000 34192 2370 22872 23296 40127 40127 234 0.004438476484892817 LPCLFYYY 8 Unmodified _LPCLFYYY_ 0 0 0 REV__ENSG00000204520|ENST00000449934|MICA REV__ENSG00000204520|ENST00000449934|MICA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1753845214844 3 361.173623 1080.49904 NaN NaN NaN NaN NaN NaN NaN 73.064 1 72.589 72.089 73.089 -0.47588 0 0 0 0.97444 1 39983 39983 0.45834 0.18932 1 + 34193 24180 22873 23297 40128 40128 -0.03798905063354141 LPCLFYYY 8 Unmodified _LPCLFYYY_ 0 0 0 REV__ENSG00000204520|ENST00000449934|MICA REV__ENSG00000204520|ENST00000449934|MICA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.283203125 2 541.256797 1080.49904 0.31801 0.00017212 -2.0832 -0.0011275 -1.7652 -0.00095541 541.2555058749698 85.781 0.50922 85.28 85.114 85.623 -0.5015 34 21 2 0 0 0 8.7369 1 47115 47115 11.114 0 1 620460 + 34194 24180 22873 23297 40129 40129 -0.03798905063354141 LPCLLDADKY 10 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))LLDADKY_ LPC(1)LLDADKY LPC(160)LLDADKY 0 1 0 ENSG00000013374|ENST00000568733|NUB1;nc|ENSG00000013374|Q9Y5A7-2|NUB1;ENST00000470316.5_1_7:151049232-151057334:+|nuORF ENSG00000013374|ENST00000568733|NUB1 ENSG00000013374|ENST00000568733|NUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3047485351562 2 604.305007 1206.59546 0.089139 5.3867E-05 -1.0907 -0.00065914 -1.0016 -0.00060527 604.304459667755 66.796 1.2377 60.621 60.261 61.499 -6.1757 135 69 3 0 0 0 3.2787E-11 5 43570 43303;43429;43570;43707;43849 163.69 111.14 1 67825000 34195 472 22874 23298 40130;40131;40132;40133;40134 40132 28 0.00042617705912562087 LPCLPLPAL 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))LPLPAL_ LPC(1)LPLPAL LPC(56)LPLPAL 0 1 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2952575683594 2 497.293714 992.572874 1.7067 0.00084872 -1.1788 -0.00058622 0.52786 0.0002625 497.2936950547697 100.91 0.21791 94.737 94.651 94.869 -6.1757 35 12 5 0 0 0 0.028712 1 67596 67596 56.048 19.582 1 140360000 34196 8844 22875 23299 40135 40135 839 0.07629063098966071 LPCMENAVLAL 11 Carbamidomethyl (C),Oxidation (M) _LPC(Carbamidomethyl (C))M(Oxidation (M))ENAVLAL_ LPC(1)MENAVLAL LPCM(1)ENAVLAL LPC(58)MENAVLAL LPCM(58)ENAVLAL 0 1 1 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8126831054688 2 623.812141 1245.60973 0.72405 0.00045167 0.8081 0.0005041 1.5322 0.00095578 623.8118365461361 79.003 0.40942 72.827 72.647 73.056 -6.1757 48 22 3 0 0 0 0.019459 1 51687 51687 57.722 31.454 1 8714700 34197 3290;3289;6888 22876 23300 40136 40136 336 585 -0.003250531374305865 LPCMENAVLAL 11 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))MENAVLAL_ LPC(1)MENAVLAL LPC(76)MENAVLAL 0 1 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8156127929688 2 615.814684 1229.61482 1.2137 0.0007474 -1.0308 -0.00063478 0.18289 0.00011263 615.8144381867719 98.352 0.41563 92.176 91.908 92.324 -6.1757 61 27 3 0 0 0 0.0047291 2 65175 65175;65316 75.761 39.634 1 40822000 34198 3290;3289;6888 22876 23301 40137;40138 40137 336 0.009192507251782445 LPCNQPNTY 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))NQPNTY_ LPC(1)NQPNTY LPC(89)NQPNTY 0 1 0 ENSG00000184384|ENST00000524717|MAML2 ENSG00000184384|ENST00000524717|MAML2 ENSG00000184384|ENST00000524717|MAML2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.750244140625 2 553.750398 1105.48624 0.92187 0.00051049 0.58248 0.00032255 1.5043 0.00083303 553.7506291762795 34.732 0.41883 30.637 30.419 30.838 -4.0951 43 24 2 0 0 0 0.008678 1 20035 20035 88.904 56.598 1 9587200 34199 9253 22877 23302 40139 40139 864 -0.06227968193547895 LPCPAHVVF 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))PAHVVF_ LPC(1)PAHVVF LPC(94)PAHVVF 0 1 0 nc|ENSG00000197948|Q86WN1-2|FCHSD1;nc|ENSG00000197948|Q86WN1-3|FCHSD1;ENSG00000197948|ENST00000435817|FCHSD1 nc|ENSG00000197948|Q86WN1-2|FCHSD1 nc|ENSG00000197948|Q86WN1-2|FCHSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.275146484375 2 520.273312 1038.53207 1.04 0.00054108 2.6486 0.001378 3.6886 0.0019191 520.2742698308289 63.46 0.8213 57.284 57.019 57.841 -6.1757 71 46 2 0 0 0 0.0081202 1 40931 40931 93.763 57.297 1 33374000 34200 10026 22878 23303 40140 40140 910 0.014347217793329037 LPCPLLPSY 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))PLLPSY_ LPC(1)PLLPSY LPC(78)PLLPSY 0 1 0 nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2 nc|ENSG00000269858|Q96KS0-2|EGLN2 nc|ENSG00000269858|Q96KS0-2|EGLN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2811279296875 2 530.280803 1058.54705 1.2194 0.00064664 -0.56914 -0.0003018 0.6503 0.00034484 530.2806788301098 86.53 0.51337 80.355 80.054 80.567 -6.1757 89 27 4 0 0 0 0.010712 2 57056 56928;57056 78.445 52.103 1 114800000 34201 10881 22879 23304 40141;40142 40142 959 0.02012168856686003 LPCPRHPPF 9 Unmodified _LPCPRHPPF_ 0 0 0 ENSG00000145536|ENST00000274181|ADAMTS16 ENSG00000145536|ENST00000274181|ADAMTS16 ENSG00000145536|ENST00000274181|ADAMTS16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2802734375 2 532.278929 1062.54331 NaN NaN NaN NaN NaN NaN NaN 85.871 1 85.37 84.87 85.87 -0.5015 0 0 0 0.70111 1 46995 46995 9.3474 0 1 34202 5704 22880 23305 40143 40143 0.014535438734810668 LPCQDLEFVQF 11 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))QDLEFVQF_ LPC(1)QDLEFVQF LPC(68)QDLEFVQF 0 1 0 ENST00000504824.5_1_5:218488-235547:+|nuORF;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000429897.5_1_3:195393072-195404601:+|nuORF;ENST00000427841.5_1_3:195698311-195709045:-|nuORF;nc|ENSG00000073578|P31040-3|SDHA ENST00000504824.5_1_5:218488-235547:+|nuORF ENST00000504824.5_1_5:218488-235547:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.3353881835938 2 698.334295 1394.65404 1.1089 0.00077438 0.15493 0.0001082 1.2638 0.00088258 698.8356997793659 98.209 0.23734 92.034 91.939 92.176 -6.1757 23 15 2 0 0 0 0.010023 1 65127 65127 67.838 51.689 1 15353000 34203 1107 22881 23306 40144 40144 98 -0.027503257196258346 LPCRKPKAF 9 Unmodified _LPCRKPKAF_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.312744140625 2 530.310229 1058.60591 0.45279 0.00024012 2.5027 0.0013272 2.9554 0.0015673 530.3114661864855 83.141 0.27684 82.644 82.488 82.764 -0.49751 15 10 2 0 0 0 0.46577 1 45547 45547 9.3474 9.3474 1 711010 34204 5779 22882 23307 40145 40145 0.0789468994166782 LPCTAEHGF 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))TAEHGF_ LPC(1)TAEHGF LPC(97)TAEHGF 0 1 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;nc|ENSG00000010030|Q9Y603-7|ETV7;ENSG00000010030|ENST00000340181|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7 DDX39B-ETV7|3|fusion DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2357788085938 2 516.234384 1030.45422 0.30876 0.00015939 1.4906 0.0007695 1.7994 0.0009289 516.2356871670663 38.672 0.46736 34.271 34.042 34.509 -4.401 62 26 3 0 0 0 0.0083087 1 22779 22779 97.075 51.054 1 34057000 34205 230 22883 23308 40146 40146 6 -0.05979335876691039 LPCTAEHGFEM 11 Carbamidomethyl (C),Oxidation (M) _LPC(Carbamidomethyl (C))TAEHGFEM(Oxidation (M))_ LPC(1)TAEHGFEM LPCTAEHGFEM(1) LPC(140)TAEHGFEM LPCTAEHGFEM(140) 0 1 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;nc|ENSG00000010030|Q9Y603-7|ETV7;ENSG00000010030|ENST00000340181|ETV7;nc|ENSG00000010030|Q9Y603-5|ETV7 DDX39B-ETV7|3|fusion DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.273193359375 2 654.27338 1306.53221 1.0816 0.00070769 -0.64486 -0.00042192 0.43678 0.00028578 654.2726905425859 37.717 0.3599 33.348 33.171 33.531 -4.3689 35 21 2 0 0 0 3.8707E-15 2 22232 22118;22232 137.42 111.16 1 8774000 34206 230 22884 23309 40147;40148 40148 6 19 -0.10879691073614595 LPCTLNLQL 9 Carbamidomethyl (C) _LPC(Carbamidomethyl (C))TLNLQL_ LPC(1)TLNLQL LPC(71)TLNLQL 0 1 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2979125976562 2 536.296985 1070.57942 1.0236 0.00054897 -0.38403 -0.00020595 0.63961 0.00034302 536.2971363520973 87.718 0.39607 81.542 81.277 81.673 -6.1757 29 21 2 0 0 0 0.013323 1 57771 57771 71.134 16.36 1 14156000 34207 1567 22885 23310 40149 40149 147 0.046949562596637406 LPCWEEWDL 9 Unmodified _LPCWEEWDL_ 0 0 0 REV__nc|ENSG00000243477|O43820-2|HYAL3 REV__nc|ENSG00000243477|O43820-2|HYAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.76416015625 2 595.762975 1189.5114 0.79689 0.00047476 0.29276 0.00017441 1.0897 0.00064917 595.7628660808906 74.474 0.22301 73.998 73.91 74.133 -0.47588 15 9 2 0 0 0 0.54444 1 40747 40747 4.756 0 1 1032000 + 34208 23595 22886 23311 40150 40150 -0.07577913390969115 LPCYWTII 8 Unmodified _LPCYWTII_ 0 0 0 ENST00000013125.8_1_14:50943004-50952342:-|nuORF ENST00000013125.8_1_14:50943004-50952342:-|nuORF ENST00000013125.8_1_14:50943004-50952342:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7645263671875 2 504.764789 1007.51502 0.47348 0.000239 -0.46342 -0.00023392 0.010061 5.0783E-06 504.7644214817678 80.66 0.3276 80.66 80.452 80.779 0 33 15 3 0 0 0 0.61462 1 44758 44758 24.674 0.46393 1 2527100 34209 10964 22887 23312 40151 40151 0.011568011735448636 LPDASASPL 9 Unmodified _LPDASASPL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4552612304688 1 870.456724 869.449448 0.28974 0.0002522 -0.628 -0.00054665 -0.33826 -0.00029444 870.4560411313277 48.054 0.40289 48.054 47.81 48.212 0 29 19 2 0 0 0 0.026094 1 26261 26261 57.471 5.203 1 3042100 34210 4480 22888 23313 40152 40152 0.009501032521825437 LPDASHVF 8 Unmodified _LPDASHVF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2268676757812 2 443.226885 884.439217 0.26205 0.00011615 -0.17614 -7.8072E-05 0.085902 3.8074E-05 443.2267361347351 47.048 0.23016 47.048 46.941 47.171 0 17 10 2 0 0 0 0.44122 1 25766 25766 40.449 21.01 1 2937300 34211 6006 22889 23314 40153 40153 -0.007624596823802676 LPDAVRFL 8 Unmodified _LPDAVRFL_ 0 0 0 ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1 ENSG00000188039|ENST00000524140|NWD1 ENSG00000188039|ENST00000524140|NWD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.2307434082031 2 465.774003 929.533452 0.87374 0.00040697 1.1071 0.00051566 1.9808 0.00092262 465.7741172833301 49.938 0.34733 44.398 44.316 44.663 -5.5391 36 22 3 0 0 0 8.7369 1 31288 31288 60.39 6.814 1 18119000 34212 9620 22890 23315 40154 40154 0.06586679139752505 LPDAYGSSYL 10 Unmodified _LPDAYGSSYL_ 0 0 0 REV__nc|ENSG00000108511|P17509-2|HOXB6 REV__nc|ENSG00000108511|P17509-2|HOXB6 MSMS AL20221201_MKP_PDAC_01 4 543.2625732421875 2 543.261122 1084.50769 NaN NaN NaN NaN NaN NaN NaN 70.911 1 64.736 64.236 65.236 -6.1757 0 0 0 0.51756 1 46348 46348 25.399 2.2509 1 + 34213 18612 22891 23316 40155 40155 -0.03118259893199138 LPDCFDVDNY 10 Unmodified _LPDCFDVDNY_ 0 0 0 REV__PRAM1|p.D653N|1|0.21|ENSG00000133246|chr19:8490356-8490356|C/T|missense_variant REV__PRAM1|p.D653N|1|0.21|ENSG00000133246|chr19:8490356-8490356|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.74853515625 2 600.747521 1199.48049 0.30298 0.00018202 1.515 0.00091013 1.818 0.0010921 600.7483255417997 36.325 0.18029 36.325 36.207 36.388 0 15 8 2 0 0 0 0.6606 1 19239 19239 7.2892 0.56607 1 4847200 + 34214 30079 22892 23317 40156 40156 -0.1112711149585266 LPDCSTVLIY 10 Unmodified _LPDCSTVLIY_ 0 0 0 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 REV__nc|ENSG00000137941|Q6ZT98-2|TTLL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2891845703125 2 562.288825 1122.5631 0.7741 0.00043527 -2.6538 -0.0014922 -1.8797 -0.0010569 562.7887398154307 47.773 0.95811 47.773 47.212 48.17 0 134 45 4 0 0 0 0.14917 1 26250 26250 39.957 0.0076237 1 57658000 + 34215 20282 22893 23318 40157 40157 0.006718303029174422 LPDCTLAHF 9 Carbamidomethyl (C) _LPDC(Carbamidomethyl (C))TLAHF_ LPDC(1)TLAHF LPDC(67)TLAHF 0 1 0 nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2;nc|ENSG00000134326|Q5EBM0-2|CMPK2;nc|ENSG00000134326|Q5EBM0-3|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2571411132812 2 537.257859 1072.50117 0.33331 0.00017908 -0.66964 -0.00035977 -0.33632 -0.00018069 537.2576255356828 53.822 0.25997 53.355 53.227 53.487 -0.46664 24 12 3 0 0 0 0.016184 1 29133 29133 67.344 41.945 1 3752500 34216 4595 22894 23319 40158 40158 472 -0.032184763255600046 LPDDCTMGYII 11 Unmodified _LPDDCTMGYII_ 0 0 0 nc|ENSG00000100060|O00587-2|MFNG;ENSG00000100060|ENST00000356998|MFNG nc|ENSG00000100060|O00587-2|MFNG nc|ENSG00000100060|O00587-2|MFNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.7825927734375 2 620.78305 1239.55155 0.38352 0.00023808 -2.5708 -0.0015959 -2.1873 -0.0013578 620.7815527772406 72.555 0.43306 72.555 72.178 72.611 0 49 17 4 0 0 0 0.46578 1 40373 40373 18.146 5.1039 1 2934300 34217 1746 22895 23320 40159 40159 -0.058647347827218255 LPDDISHGY 9 Unmodified _LPDDISHGY_ 0 0 0 ENSG00000261115|ENST00000565468|TMEM178B ENSG00000261115|ENST00000565468|TMEM178B ENSG00000261115|ENST00000565468|TMEM178B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7383422851562 2 508.737814 1015.46108 0.66362 0.00033761 0.18909 9.62E-05 0.85272 0.00043381 508.73787385037326 36.24 0.18339 36.24 36.167 36.35 0 17 8 3 0 0 0 0.019303 1 19223 19223 64.236 15.89 1 5223900 34218 10834 22896 23321 40160 40160 -0.046036997244755185 LPDDKLTLF 9 Unmodified _LPDDKLTLF_ 0 0 0 ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2978515625 2 531.297507 1060.58046 0.17564 9.3318E-05 0.41049 0.00021809 0.58614 0.00031141 531.2977542047229 70.251 0.39545 70.251 70.122 70.518 0 27 17 2 0 0 0 0.14 1 39127 39127 29.082 0.59474 1 958460 34219 3565;5591 22897 23322 40161 40161 0.05259493900234702 LPDDKLTLF 9 Unmodified _LPDDKLTLF_ 0 0 0 ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2972412109375 2 531.297507 1060.58046 0.25541 0.0001357 0.035127 1.8663E-05 0.29053 0.00015436 531.2975451583536 70.658 0.32171 70.18 70.089 70.411 -0.47735 35 21 2 0 0 0 0.085319 1 38632 38632 36.506 5.8697 1 3506000 34220 3565;5591 22897 23322 40162 40162 0.05259493900234702 LPDDKPQQP 9 Unmodified _LPDDKPQQP_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MSMS AL20221201_MKP_PDAC_01 4 519.2658081054688 2 519.266739 1036.51892 NaN NaN NaN NaN NaN NaN NaN 79.764 1 73.588 73.088 74.088 -6.1757 0 0 0 0.56093 1 52293 52293 13.906 0.39817 1 34221 3669 22898 23323 40163 40163 0.002125622009543804 LPDDKVTAL 9 Unmodified _LPDDKVTAL_ 0 0 0 nc|ENSG00000160183|P57727-2|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2739562988281 2 486.274032 970.533512 -0.21315 -0.00010365 -0.99621 -0.00048443 -1.2094 -0.00058808 486.2740921488237 41.679 0.41872 41.679 41.462 41.881 0 63 21 4 0 0 0 0.0085366 1 22546 22546 90.135 11.986 1 46535000 34222 6690 22899 23324 40164 40164 0.0470663434908829 LPDDPRQM 8 Oxidation (M) _LPDDPRQM(Oxidation (M))_ LPDDPRQM(1) LPDDPRQM(46) 0 0 1 ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2313537597656 2 494.231842 986.44913 -0.37126 -0.00018349 -0.23828 -0.00011777 -0.60954 -0.00030125 494.23177426811503 20.013 0.45036 20.013 19.777 20.227 0 119 44 3 0 0 0 0.38465 1 10057 10057 46.021 22 1 4819500 34223 10816 22900 23325 40165 40165 1729 -0.04463639739299197 LPDDPRQM 8 Oxidation (M) _LPDDPRQM(Oxidation (M))_ LPDDPRQM(1) LPDDPRQM(61) 0 0 1 ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2323913574219 2 494.231842 986.44913 0.16134 7.9738E-05 -0.10377 -5.1288E-05 0.057565 2.8451E-05 494.23193977132996 22.992 0.42534 20.213 20.015 20.44 -2.7784 54 32 3 0 0 0 0.25522 1 12440 12440 61.357 31.133 1 7947200 34224 10816 22900 23325 40166 40166 1729 -0.04463639739299197 LPDDPRQM 8 Unmodified _LPDDPRQM_ 0 0 0 ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2353210449219 2 486.234384 970.454216 1.0535 0.00051224 -0.37708 -0.00018335 0.6764 0.00032889 486.23423855006456 35.701 0.58205 31.508 31.188 31.77 -4.1928 62 36 2 0 0 0 0.42686 2 20842 20637;20842 41.84 14.956 1 33735000 34225 10816 22900 23326 40167;40168 40168 -0.03219335876690366 LPDDWDNRTSY 11 Unmodified _LPDDWDNRTSY_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3045043945312 2 691.304581 1380.59461 0.38591 0.00026678 -0.74179 -0.00051281 -0.35589 -0.00024603 691.3043101218258 43.036 0.15591 43.036 42.928 43.084 0 12 7 2 0 0 0 0.15772 1 23366 23366 49.742 41.586 1 6472000 34226 3283 22901 23327 40169 40169 -0.08046505409447491 LPDDYRCSY 9 Carbamidomethyl (C) _LPDDYRC(Carbamidomethyl (C))SY_ LPDDYRC(1)SY LPDDYRC(79)SY 0 1 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000530013.5_1_11:33775932-33796043:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7533569335938 2 594.753138 1187.49172 0.85813 0.00051037 -0.71789 -0.00042697 0.14023 8.3403E-05 594.7528595230935 37.117 0.39119 32.833 32.632 33.023 -4.2835 59 23 3 0 0 0 0.010611 2 21655 21655;21790 78.728 54.707 1 30354000 34227 2720 22902 23328 40170;40171 40170 279 -0.09452289401747294 LPDEARSL 8 Unmodified _LPDEARSL_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14;nc|ENSG00000151366|O95298-3|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7436828613281 2 450.742899 899.471246 -0.50295 -0.0002267 0.79653 0.00035903 0.29358 0.00013233 450.74312212629394 32.088 0.26349 32.088 31.94 32.204 0 21 12 2 0 0 0 0.67686 1 16731 16731 19.257 3.4098 1 1028300 34228 6109 22903 23329 40172 40172 0.017489080007635494 LPDEDLASF 9 Unmodified _LPDEDLASF_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7406005859375 2 503.740022 1005.46549 0.46393 0.0002337 0.10834 5.4573E-05 0.57226 0.00028827 503.74020976346736 64.041 0.54147 64.041 63.824 64.365 0 44 22 3 0 0 0 0.042911 2 35768 35675;35768 48.346 6.2513 1 5883900 34229 703 22904 23330 40173;40174 40174 -0.03702235301557266 LPDEEVSIIRR 11 Unmodified _LPDEEVSIIRR_ 0 0 0 REV__ENSG00000130038|ENST00000440314|CRACR2A REV__ENSG00000130038|ENST00000440314|CRACR2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.8700561523438 2 663.872434 1325.73031 NaN NaN NaN NaN NaN NaN NaN 68.251 1 68.251 67.751 68.751 0 0 0 0 0.94032 1 38050 38050 2.2828 1.0894 1 + 34230 19694 22905 23331 40175 40175 0.08047814172027756 LPDEIYHVY 9 Unmodified _LPDEIYHVY_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7847900390625 2 574.784764 1147.55498 0.94458 0.00054293 -0.79983 -0.00045973 0.14475 8.3201E-05 574.7842152476364 54.143 0.64486 54.143 53.839 54.484 0 102 29 5 0 0 0 0.0082281 3 30071 29960;30071;30181 92.822 62.186 1 258000000 34231 5918 22906 23332 40176;40177;40178 40177 -0.012899806221867038 LPDEIYHVY 9 Unmodified _LPDEIYHVY_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7842407226562 2 574.784764 1147.55498 0.23506 0.00013511 -0.53351 -0.00030665 -0.29845 -0.00017155 574.7843953415986 54.776 0.51426 54.309 54.064 54.579 -0.46664 105 25 6 0 0 0 0.0082281 1 29697 29697 92.822 62.186 1 141890000 34232 5918 22906 23332 40179 40179 -0.012899806221867038 LPDEIYHVY 9 Unmodified _LPDEIYHVY_ 0 0 0 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 ENSG00000148335|ENST00000372483|NTMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7855224609375 2 574.784764 1147.55498 1.1659 0.00067014 -0.030833 -1.7723E-05 1.1351 0.00065242 574.7846519806893 61.034 0.88012 54.886 54.532 55.412 -6.1478 167 45 5 0 0 0 0.0048787 3 39261 39261;39391;39525 117.6 79.625 1 992650000 34233 5918 22906 23332 40180;40181;40182 40180 -0.012899806221867038 LPDELVLDY 9 Unmodified _LPDELVLDY_ 0 0 0 REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1 REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1 MSMS AL20221201_MKP_PDAC_01 4 538.7780151367188 2 538.779148 1075.54374 NaN NaN NaN NaN NaN NaN NaN 36.001 1 31.808 31.308 32.308 -4.1928 0 0 0 0.23581 1 20972 20972 28.487 5.3384 1 + 34234 24488 22907 23333 40183 40183 0.008991972836838613 LPDERTISL 9 Unmodified _LPDERTISL_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2909545898438 2 522.290214 1042.56587 0.77479 0.00040466 -0.21754 -0.00011362 0.55725 0.00029105 522.2900673969671 49.449 0.39311 49.449 49.236 49.629 0 46 17 3 0 0 0 0.011291 2 27142 27142;27256 76.825 26.892 1 148260000 34235 1917 22908 23334 40184;40185 40184 0.046294217521108294 LPDERTISL 9 Unmodified _LPDERTISL_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.290283203125 2 522.290214 1042.56587 0.70869 0.00037014 -0.51536 -0.00026917 0.19333 0.00010097 522.2902407781341 49.79 0.36999 49.398 49.218 49.588 -0.3923 32 18 2 0 0 0 0.033587 2 26839 26729;26839 53.404 19.002 1 15366000 34236 1917 22908 23334 40186;40187 40187 0.046294217521108294 LPDERTISL 9 Unmodified _LPDERTISL_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.29345703125 2 522.290214 1042.56587 0.45573 0.00023802 1.1934 0.00062332 1.6492 0.00086134 522.2909416260403 55.943 0.46133 50.022 49.766 50.227 -5.9211 72 26 3 0 0 0 0.011291 2 35518 35518;35649 76.825 33.052 1 288790000 34237 1917 22908 23334 40188;40189 40188 0.046294217521108294 LPDFDISAYF 10 Unmodified _LPDFDISAYF_ 0 0 0 nc|ENSG00000293543|Q6B8I1-4|DUSP13A;nc|ENSG00000293543|Q6B8I1|DUSP13A nc|ENSG00000293543|Q6B8I1-4|DUSP13A nc|ENSG00000293543|Q6B8I1-4|DUSP13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.284912109375 2 594.284597 1186.55464 0.072837 4.3286E-05 0.21076 0.00012525 0.2836 0.00016854 594.2846183805409 89.335 0.47997 89.335 89.076 89.556 0 71 24 4 0 0 0 0.65502 1 49363 49363 7.9102 2.6795 1 5959300 34238 16656 22909 23335 40190 40190 -0.03117400342057408 LPDFDISAYF 10 Unmodified _LPDFDISAYF_ 0 0 0 nc|ENSG00000293543|Q6B8I1-4|DUSP13A;nc|ENSG00000293543|Q6B8I1|DUSP13A nc|ENSG00000293543|Q6B8I1-4|DUSP13A nc|ENSG00000293543|Q6B8I1-4|DUSP13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.28466796875 2 594.284597 1186.55464 0.52048 0.00030931 -0.47676 -0.00028333 0.043712 2.5977E-05 594.2842311568231 89.859 0.83805 89.358 88.913 89.751 -0.50171 135 40 5 0 0 0 0.65502 1 49025 49025 7.9102 4.6288 1 36203000 34239 16656 22909 23335 40191 40191 -0.03117400342057408 LPDFDLGRL 9 Unmodified _LPDFDLGRL_ 0 0 0 REV__ENSG00000004777|ENST00000007510|ARHGAP33 REV__ENSG00000004777|ENST00000007510|ARHGAP33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2852172851562 2 523.287474 1044.5604 0.32461 0.00016987 -1.1243 -0.00058831 -0.79964 -0.00041844 523.2870592060206 63.057 0.34863 62.571 62.423 62.771 -0.48617 29 16 2 0 0 0 0.14 1 34368 34368 29.082 1.4528 1 2874200 + 34240 16949 22910 23336 40192 40192 0.039897429602888224 LPDFLAMNY 9 Unmodified _LPDFLAMNY_ 0 0 0 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 ENSG00000167104|ENST00000349552|BPIFB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.263916015625 2 542.26261 1082.51067 0.22327 0.00012107 -1.2281 -0.00066595 -1.0048 -0.00054488 542.261907871265 82.422 0.30817 82.422 82.225 82.533 0 21 12 2 0 0 0 0.39863 1 45692 45692 12.532 0.89125 1 1324500 34241 7571 22911 23337 40193 40193 -0.02728708040035599 LPDGDSASRSF 11 Unmodified _LPDGDSASRSF_ 0 0 0 ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.8113403320312 2 576.27001 1150.52547 0.32287 0.00018606 -2.4035 -0.001385 -2.0806 -0.001199 576.7700351176667 31.513 0.20229 31.513 31.398 31.6 0 17 9 3 0 0 0 0.28106 1 16431 16431 19.626 9.552 1 1458200 34242 4841 22912 23338 40194 40194 -0.043775446383278904 LPDGHMPAM 9 2 Oxidation (M) _LPDGHM(Oxidation (M))PAM(Oxidation (M))_ LPDGHM(1)PAM(1) LPDGHM(60)PAM(60) 0 0 2 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.71484375 2 500.71497 999.415387 -0.24689 -0.00012362 -0.0972 -4.867E-05 -0.34409 -0.00017229 500.715058568895 17.686 0.30225 17.686 17.47 17.773 0 134 51 3 0 0 0 0.023164 1 8741 8741 60.39 41.133 1 3240900 34243 1686;16079 22913 23339 40195 40195 287;288 -0.08434384502709236 LPDGHMPAM 9 2 Oxidation (M) _LPDGHM(Oxidation (M))PAM(Oxidation (M))_ LPDGHM(1)PAM(1) LPDGHM(60)PAM(60) 0 0 2 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7150573730469 2 500.71497 999.415387 -0.23965 -0.00011999 -0.21801 -0.00010916 -0.45765 -0.00022915 500.7150493794862 17.857 0.25852 17.857 17.745 18.004 0 117 44 3 0 0 0 0.023164 1 8847 8847 60.39 41.133 1 3391200 34244 1686;16079 22913 23339 40196 40196 287;288 -0.08434384502709236 LPDGHMPAM 9 2 Oxidation (M) _LPDGHM(Oxidation (M))PAM(Oxidation (M))_ LPDGHM(1)PAM(1) LPDGHM(60)PAM(60) 0 0 2 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7150268554688 2 500.71497 999.415387 1.0532 0.00052737 -0.91645 -0.00045888 0.13679 6.8494E-05 500.7148194492166 19.195 0.2503 16.538 16.388 16.638 -2.6564 40 16 3 0 0 0 0.023164 2 10100 10100;10209 60.39 41.133 1 8472500 34245 1686;16079 22913 23339 40197;40198 40197 287;288 -0.08434384502709236 LPDGHMPAM 9 2 Oxidation (M) _LPDGHM(Oxidation (M))PAM(Oxidation (M))_ LPDGHM(1)PAM(1) LPDGHM(60)PAM(60) 0 0 2 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.715576171875 2 500.71497 999.415387 1.1242 0.00056288 -1.403 -0.00070251 -0.27886 -0.00013963 500.7145135019101 19.452 0.27665 16.795 16.649 16.926 -2.6564 48 27 3 0 0 0 0.023164 1 10322 10322 60.39 41.133 1 7556300 34246 1686;16079 22913 23339 40199 40199 287;288 -0.08434384502709236 LPDGHMPAM 9 Oxidation (M) _LPDGHMPAM(Oxidation (M))_ LPDGHMPAM(1) LPDGHM(-51)PAM(51) 0 0 1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7176208496094 2 492.717513 983.420473 0.63626 0.0003135 0.51867 0.00025556 1.1549 0.00056905 492.7175887671416 31.759 0.54209 28.063 27.886 28.428 -3.6958 34 29 2 0 0 0 0.0086179 1 18015 18015 89.427 66.278 2 27042000 34247 1686;16079 22913 23340 40200 40200 287;288 -0.07190080640089036 LPDGHMPAM 9 Unmodified _LPDGHMPAM_ 0 0 0 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7205810546875 2 484.720055 967.425558 0.85241 0.00041318 -0.097285 -4.7156E-05 0.75512 0.00036602 484.72028054691896 48.016 0.55331 42.782 42.451 43.005 -5.2339 78 33 3 0 0 0 0.038285 2 29893 29764;29893 50.855 37.347 1 45001000 34248 1686;16079 22913 23341 40201;40202 40202 -0.05945776777480205 LPDGPSPLL 9 Unmodified _LPDGPSPLL_ 0 0 0 ENSG00000149798|ENST00000279249|CDC42EP2;CDC42EP2|p.R94W|1|0.1|ENSG00000149798|chr11:65321178-65321178|C/T|missense_variant ENSG00000149798|ENST00000279249|CDC42EP2 ENSG00000149798|ENST00000279249|CDC42EP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2581481933594 2 454.758018 907.501483 -0.20466 -9.307E-05 -1.3367 -0.00060786 -1.5413 -0.00070093 454.7572668740327 69.809 0.33903 69.33 69.109 69.448 -0.47903 35 14 3 0 0 0 0.2143 1 38120 38120 21.747 0 1 1811700 34249 6037 22914 23342 40203 40203 0.04403266665940464 LPDGPSPLL 9 Unmodified _LPDGPSPLL_ 0 0 0 ENSG00000149798|ENST00000279249|CDC42EP2;CDC42EP2|p.R94W|1|0.1|ENSG00000149798|chr11:65321178-65321178|C/T|missense_variant ENSG00000149798|ENST00000279249|CDC42EP2 ENSG00000149798|ENST00000279249|CDC42EP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.757080078125 2 454.758018 907.501483 NaN NaN NaN NaN NaN NaN NaN 69.936 1 69.457 68.957 69.957 -0.47903 0 0 0 0.76439 1 38237 38237 7.2892 0 1 34250 6037 22914 23342 40204 40204 0.04403266665940464 LPDGRTLKY 9 Unmodified _LPDGRTLKY_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000463112.1_1_1:32051343-32052577:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.7650146484375 2 531.800749 1061.58694 1.0922 0.00058084 -0.52 -0.00027654 0.57222 0.00030431 531.8005161115254 35.731 0.22314 31.538 31.425 31.648 -4.1928 22 13 2 0 0 0 0.17716 1 20705 20705 12.873 3.4895 1 5186800 34251 5451 22915 23343 40205 40205 0.058614318515992636 LPDGTSLTQTF 11 Unmodified _LPDGTSLTQTF_ 0 0 0 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.297607421875 2 590.298236 1178.58192 0.018068 1.0666E-05 -0.26472 -0.00015626 -0.24665 -0.0001456 590.2977751184311 62.362 0.60522 62.362 62.122 62.727 0 71 36 3 0 0 0 0.0088414 2 34790 34682;34790 69.105 37.837 1 13329000 34252 6840 22916 23344 40206;40207 40207 -0.00022916801685823884 LPDGTSLTQTF 11 Unmodified _LPDGTSLTQTF_ 0 0 0 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2984619140625 2 590.298236 1178.58192 0.48212 0.0002846 -0.47693 -0.00028153 0.005197 3.0678E-06 590.2977134685914 62.926 0.43464 62.44 62.207 62.642 -0.48617 65 21 4 0 0 0 0.00078105 2 34244 34244;34353 85.642 55.992 1 30356000 34253 6840 22916 23344 40208;40209 40208 -0.00022916801685823884 LPDGVINMSI 10 Unmodified _LPDGVINMSI_ 0 0 0 ENSG00000198682|ENST00000456849|PAPSS2 ENSG00000198682|ENST00000456849|PAPSS2 ENSG00000198682|ENST00000456849|PAPSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7806396484375 2 529.781167 1057.54778 0.27515 0.00014577 -0.45983 -0.00024361 -0.18468 -9.7842E-05 529.7800876515191 57.907 0.43254 57.417 57.226 57.659 -0.48974 33 20 3 0 0 0 0.24625 1 31437 31437 30.637 6.616 1 10318000 34254 10122 22917 23345 40210 40210 0.021309635057377818 LPDGYEFKF 9 Unmodified _LPDGYEFKF_ 0 0 0 ENST00000472321.1_1_22:38074415-38075753:+|nuORF;ENSG00000100097|ENST00000215909|LGALS1;ENST00000425542.5_1_22:38072875-38075753:+|nuORF ENST00000472321.1_1_22:38074415-38075753:+|nuORF ENST00000472321.1_1_22:38074415-38075753:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2761840820312 2 558.274032 1114.53351 NaN NaN NaN NaN NaN NaN NaN 99.621 1 99.585 99.085 100.08 -0.036301 0 0 0 0.6306 1 55327 55327 11.64 1.4569 1 34255 1753 22918 23346 40211 40211 -0.019173656509110515 LPDGYFDPYDL 11 Unmodified _LPDGYFDPYDL_ 0 0 0 REV__ENSG00000171860|ENST00000307637|C3AR1 REV__ENSG00000171860|ENST00000307637|C3AR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2034606933594 3 438.867805 1313.58158 0.24995 0.0001097 0.91222 0.00040035 1.1622 0.00051004 438.86805654569423 37.281 0.27247 37.281 37.097 37.369 0 32 13 4 0 0 0 0.71259 1 19792 19792 3.0723 0.98626 1 4052000 + 34256 22608 22919 23347 40212 40212 -0.06266336521503035 LPDGYFDPYDL 11 Unmodified _LPDGYFDPYDL_ 0 0 0 REV__ENSG00000171860|ENST00000307637|C3AR1 REV__ENSG00000171860|ENST00000307637|C3AR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 438.867805 1313.58158 0.24995 0.0001097 0.91222 0.00040035 1.1622 0.00051004 438.86805654569423 37.281 0.27247 37.281 37.097 37.369 0 0 0 NaN 3.0723 32 13 4 NaN NaN NaN NaN 0 NaN NaN 0 4052000 + 34257 22608 22919 23347 -0.06266336521503035 LPDHAVPAAF 10 Unmodified _LPDHAVPAAF_ 0 0 0 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.274658203125 2 519.274367 1036.53418 0.57762 0.00029994 0.0036814 1.9117E-06 0.5813 0.00030186 519.2744170078269 67.048 0.29942 67.066 66.939 67.239 0.018036 34 14 3 0 0 0 0.44373 1 36786 36786 19.257 4.4187 1 6549800 34258 4467 22920 23348 40213 40213 0.017374737888076197 LPDHINIVL 9 Unmodified _LPDHINIVL_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3059692382812 2 517.305667 1032.59678 0.47936 0.00024798 0.23863 0.00012345 0.71799 0.00037142 517.3056527811644 71.93 0.44486 71.454 71.242 71.686 -0.4761 51 17 4 0 0 0 0.022193 1 39325 39325 61.357 19.518 1 14626000 34259 3520 22921 23349 40214 40214 0.08178619856971636 LPDHINIVL 9 Unmodified _LPDHINIVL_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3056030273438 2 517.305667 1032.59678 0.89743 0.00046425 -0.73465 -0.00038004 0.16278 8.4206E-05 517.3054581888779 83.956 1.3691 77.78 76.964 78.333 -6.1757 111 73 2 0 0 0 0.03568 4 55470 54940;55341;55470;55600 52.268 10.174 1 14229000 34260 3520 22921 23349 40215;40216;40217;40218 40217 0.08178619856971636 LPDHVLGDSF 10 Unmodified _LPDHVLGDSF_ 0 0 0 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2537841796875 2 550.274564 1098.53457 0.41794 0.00022998 0.041574 2.2877E-05 0.45951 0.00025286 550.2755847242252 56.775 0.40948 56.775 56.564 56.974 0 37 14 3 0 0 0 0.16163 1 31529 31529 37.974 3.5723 1 5810000 + 34261 17896 22922 23350 40219 40219 -0.010751512819979325 LPDIKWYRFG 10 Unmodified _LPDIKWYRFG_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.7293395996094 3 432.236274 1293.68699 1.0875 0.00047005 1.0856 0.00046922 2.1731 0.00093928 432.23667499367934 91.571 0.38506 85.396 85.145 85.53 -6.1757 29 20 2 0 0 0 0.23489 1 60415 60415 9.544 4.8281 1 8243900 34262 6400 22923 23351 40220 40220 0.05189669185369894 LPDISQSFL 9 Unmodified _LPDISQSFL_ 0 0 0 ENST00000513040.5_2_5:125695875-125801126:+|nuORF ENST00000513040.5_2_5:125695875-125801126:+|nuORF ENST00000513040.5_2_5:125695875-125801126:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2734375 2 510.274032 1018.53351 0.47471 0.00024223 -0.53731 -0.00027418 -0.062604 -3.1945E-05 510.2739777640522 43.713 0.46362 38.948 38.724 39.188 -4.7648 41 28 2 0 0 0 0.10247 1 26636 26636 32.786 0.33204 1 14740000 34263 14630 22924 23352 40221 40221 0.02498634349092299 LPDISQSFL 9 Unmodified _LPDISQSFL_ 0 0 0 ENST00000513040.5_2_5:125695875-125801126:+|nuORF ENST00000513040.5_2_5:125695875-125801126:+|nuORF ENST00000513040.5_2_5:125695875-125801126:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.2936096191406 2 510.274032 1018.53351 NaN NaN NaN NaN NaN NaN NaN 92.163 1 85.988 85.488 86.488 -6.1757 0 0 0 0.18753 1 60940 60940 32.305 1.6689 1 34264 14630 22924 23352 40222 40222 0.02498634349092299 LPDKHSLAF 9 Unmodified _LPDKHSLAF_ 0 0 0 ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000469911.1_1_3:182328694-182329198:+|nuORF;ENST00000462348.1_1_6:42848614-42854030:+|nuORF ENST00000397415.7_1_6:42848808-42854199:+|nuORF ENST00000397415.7_1_6:42848808-42854199:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.28271484375 2 514.282192 1026.54983 0.60448 0.00031087 -0.46542 -0.00023936 0.13906 7.1515E-05 514.2820227283098 43.279 0.40599 38.514 38.318 38.724 -4.7648 39 28 2 0 0 0 0.021948 1 26212 26212 61.602 30.334 1 16603000 34265 5763 22925 23353 40223 40223 0.03761760305860662 LPDKKTVHY 9 Unmodified _LPDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5415344238281 3 367.541475 1099.60259 -0.54026 -0.00019857 0.39162 0.00014394 -0.14864 -5.463E-05 367.541608490571 18.021 0.1742 18.021 17.939 18.113 0 61 22 3 0 0 0 0.32235 1 8898 8898 20.581 12.425 1 9071600 34266 5709 22926 23354 40224 40224 0.05677718368656315 LPDKKTVHY 9 Unmodified _LPDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5409851074219 3 367.541475 1099.60259 -0.56947 -0.0002093 0.25012 9.193E-05 -0.31935 -0.00011737 367.54140362692084 17.947 0.11083 17.961 17.913 18.023 0.013865 21 14 2 0 0 0 0.4887 1 8962 8962 12.175 9.1025 1 1539200 34267 5709 22926 23354 40225 40225 0.05677718368656315 LPDKKTVHY 9 Unmodified _LPDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5415954589844 3 367.541475 1099.60259 1.5764 0.0005794 -0.88422 -0.00032499 0.69221 0.00025442 367.5411371806674 19.298 0.37581 16.641 16.42 16.795 -2.6564 77 26 4 0 0 0 0.028475 2 10160 10160;10270 51.415 23.182 1 51360000 34268 5709 22926 23354 40226;40227 40226 0.05677718368656315 LPDKKTVHY 9 Unmodified _LPDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8071899414062 2 550.808574 1099.60259 0.91209 0.00050239 -1.6356 -0.0009009 -0.7235 -0.00039851 550.8075690442254 19.28 0.15478 16.624 16.534 16.689 -2.6564 15 10 2 0 0 0 0.040683 1 10187 10187 49.554 19.714 1 3401300 34269 5709 22926 23354 40228 40228 0.05677718368656315 LPDKSIASL 9 Unmodified _LPDKSIASL_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2767639160156 2 472.276575 942.538597 -0.079385 -3.7492E-05 0.18846 8.9005E-05 0.10907 5.1513E-05 472.2765658872468 44.594 0.29359 44.594 44.437 44.73 0 24 15 2 0 0 0 0.0085366 2 24207 24207;24341 90.135 11.986 1 15457000 34270 1541 22927 23355 40229;40230 40229 0.06502938211713172 LPDKSIASL 9 Unmodified _LPDKSIASL_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2762756347656 2 472.276575 942.538597 1.0317 0.00048724 -0.14743 -6.9629E-05 0.88424 0.00041761 472.27633575226656 50.518 0.61353 44.979 44.68 45.294 -5.5391 63 38 2 0 0 0 0.0085366 1 31663 31663 90.135 17.167 1 47523000 34271 1541 22927 23355 40231 40231 0.06502938211713172 LPDKTIASL 9 Unmodified _LPDKTIASL_ 0 0 0 nc|ENSG00000117625|Q9P2K3-2|RCOR3;nc|ENSG00000117625|Q9P2K3-4|RCOR3;nc|ENSG00000117625|Q9P2K3|RCOR3;ENSG00000117625|ENST00000419091|RCOR3 nc|ENSG00000117625|Q9P2K3-2|RCOR3 nc|ENSG00000117625|Q9P2K3-2|RCOR3 MSMS AL20221201_MKP_PDAC_01 4 479.2850036621094 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 52.174 1 46.439 45.939 46.939 -5.7345 0 0 0 0.013541 1 32920 32920 87.258 14.29 1 34272 3328 22928 23356 40232 40232 0.0742322472875685 LPDLFGVRE 9 Unmodified _LPDLFGVRE_ 0 0 0 REV__ENSG00000129810|ENST00000412997|SGO1 REV__ENSG00000129810|ENST00000412997|SGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2879638671875 2 523.287474 1044.5604 0.24012 0.00012565 -0.31326 -0.00016392 -0.073134 -3.827E-05 523.2873268004673 62.659 0.41808 62.637 62.393 62.811 -0.021614 40 21 2 0 0 0 0.14 1 34329 34329 29.082 2.8134 1 7839200 + 34273 19686 22929 23357 40233 40233 0.039897429602888224 LPDLFGVRE 9 Unmodified _LPDLFGVRE_ 0 0 0 REV__ENSG00000129810|ENST00000412997|SGO1 REV__ENSG00000129810|ENST00000412997|SGO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2888793945312 2 523.287474 1044.5604 1.0923 0.00057158 -1.9234 -0.0010065 -0.8311 -0.0004349 523.2874106597925 68.997 0.477 62.821 62.518 62.995 -6.1757 46 25 3 0 0 0 0.024882 1 45107 45107 58.679 3.9053 1 25723000 + 34274 19686 22929 23357 40234 40234 0.039897429602888224 LPDLHALEHTY 11 Unmodified _LPDLHALEHTY_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2;ENST00000468890.1_1_10:115614631-115618462:+|nuORF ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8912353515625 3 436.890944 1307.651 0.37965 0.00016587 -0.30125 -0.00013162 0.0784 3.4252E-05 436.89093537838755 57.726 0.26397 57.236 57.046 57.31 -0.48974 21 12 2 0 0 0 0.33405 1 31330 31330 24.957 19.91 1 3840400 34275 9877 22930 23358 40235 40235 0.009481672178935696 LPDLHALEHTY 11 Unmodified _LPDLHALEHTY_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2;ENST00000468890.1_1_10:115614631-115618462:+|nuORF ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 436.890944 1307.651 0.49377 0.00021572 0.96126 0.00041997 1.455 0.00063569 437.2254377378315 57.05 0.23331 57.05 56.922 57.156 0 -0.093451 0.0012979 NaN 24.957 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 884640 34276 9877 22930 23358 0.009481672178935696 LPDLLEMDKN 10 Unmodified _LPDLLEMDKN_ 0 0 0 ENST00000465759.1_1_3:14693292-14708492:+|nuORF;ENSG00000154781|ENST00000383794|CCDC174 ENST00000465759.1_1_3:14693292-14708492:+|nuORF ENST00000465759.1_1_3:14693292-14708492:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.536865234375 3 396.537401 1186.59037 1.3077 0.00051857 -1.413 -0.0005603 -0.10523 -4.1727E-05 396.53666589429093 20.458 0.4814 17.765 17.571 18.052 -2.693 48 28 3 0 0 0 0.65891 1 10966 10966 7.4771 0 1 1860600 34277 6348 22931 23359 40236 40236 0.004543138433064087 LPDLMYLDY 9 Unmodified _LPDLMYLDY_ 0 0 0 nc|ENSG00000171962|Q9H069-2|DRC3;ENSG00000171962|ENST00000399187|DRC3 nc|ENSG00000171962|Q9H069-2|DRC3 nc|ENSG00000171962|Q9H069-2|DRC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3245239257812 2 571.775551 1141.53655 0.0091202 5.2147E-06 -1.4548 -0.00083183 -1.4457 -0.00082661 571.7749556746855 72.419 0.10785 72.46 72.399 72.507 0.041725 6 4 2 0 0 0 0.16785 1 39870 39870 23.148 10.106 1 660360 34278 8167 22932 23360 40237 40237 -0.028558585883956766 LPDLNHSQVY 10 Unmodified _LPDLNHSQVY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2986450195312 2 593.29857 1184.58259 -0.12809 -7.5994E-05 -0.34029 -0.0002019 -0.46838 -0.00027789 593.2982582142888 44.227 0.46727 44.227 44.005 44.472 0 38 14 4 0 0 0 0.029039 1 24066 24066 61.09 41.833 1 73140000 34279 293 22933 23361 40238 40238 -0.002320773619430838 LPDLNHSQVY 10 Unmodified _LPDLNHSQVY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7999877929688 2 593.29857 1184.58259 -0.16562 -9.8262E-05 -0.41375 -0.00024548 -0.57937 -0.00034374 593.2982202497749 44.474 0.22726 44.158 44.059 44.287 -0.31585 27 15 2 0 0 0 0.0016724 1 23717 23717 114.5 114.5 1 35582000 34280 293 22933 23361 40239 40239 -0.002320773619430838 LPDLNHSQVY 10 Unmodified _LPDLNHSQVY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2985229492188 2 593.29857 1184.58259 0.80989 0.00048051 -0.22861 -0.00013563 0.58128 0.00034487 593.2983876943476 50.595 0.61353 45.056 44.68 45.294 -5.5391 107 38 4 0 0 0 0.0041527 3 31743 31598;31743;31874 94.909 87.258 1 275960000 34281 293 22933 23361 40240;40241;40242 40241 -0.002320773619430838 LPDLNINSM 9 Unmodified _LPDLNINSM_ 0 0 0 ENSG00000198464|ENST00000595962|ZNF480 ENSG00000198464|ENST00000595962|ZNF480 ENSG00000198464|ENST00000595962|ZNF480 MSMS AL20221201_MKP_PDAC_01 4 508.7585144042969 2 508.757692 1015.50083 NaN NaN NaN NaN NaN NaN NaN 77.551 1 71.375 70.875 71.875 -6.1757 0 0 0 0.16996 1 50730 50730 34.402 11.665 1 34282 10093 22934 23362 40243 40243 -0.006298960453932523 LPDLPIGLVF 10 Unmodified _LPDLPIGLVF_ 0 0 0 ENSG00000185972|ENST00000335119|CCIN ENSG00000185972|ENST00000335119|CCIN ENSG00000185972|ENST00000335119|CCIN MSMS AL20221201_MKP_PDAC_01 4 542.326904296875 2 542.326068 1082.63758 NaN NaN NaN NaN NaN NaN NaN 89.259 1 83.084 82.584 83.584 -6.1757 0 0 0 0.24983 1 58915 58915 39.957 1.7818 1 34283 9435 22935 23363 40244 40244 0.09956961176612822 LPDLQRSKQAL 11 Unmodified _LPDLQRSKQAL_ 0 0 0 ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000563160.5_1_15:45879945-45897659:+|nuORF ENST00000563160.5_1_15:45879945-45897659:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.9170837402344 3 423.582221 1267.72483 -0.50253 -0.00021286 1.1528 0.00048828 0.65022 0.00027542 423.5826642806607 36.161 0.24134 35.912 35.805 36.046 -0.2497 22 10 3 0 0 0 0.38151 1 18958 18958 22.486 5.4375 1 5136300 34284 2182 22936 23364 40245 40245 0.10168135380240528 LPDLQRSKQAL 11 Unmodified _LPDLQRSKQAL_ 0 0 0 ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000563160.5_1_15:45879945-45897659:+|nuORF ENST00000563160.5_1_15:45879945-45897659:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5826416015625 3 423.582221 1267.72483 1.2181 0.00051597 0.1689 7.1542E-05 1.387 0.00058751 423.58224287231695 40.685 0.4191 36.155 35.971 36.39 -4.5294 63 25 3 0 0 0 0.12646 2 24402 24273;24402 39.413 16.852 1 29785000 34285 2182 22936 23364 40246;40247 40247 0.10168135380240528 LPDLQRSKQAL 11 Unmodified _LPDLQRSKQAL_ 0 0 0 ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000563160.5_1_15:45879945-45897659:+|nuORF ENST00000563160.5_1_15:45879945-45897659:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.8695678710938 2 634.869694 1267.72483 NaN NaN NaN NaN NaN NaN NaN 40.678 1 36.149 35.649 36.649 -4.5294 0 0 0 0.0004016 1 24325 24325 92.201 53.586 1 34286 2182 22936 23364 40248 40248 0.10168135380240528 LPDLQRSKQAL 11 Unmodified _LPDLQRSKQAL_ 0 0 0 ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6 ENST00000563160.5_1_15:45879945-45897659:+|nuORF ENST00000563160.5_1_15:45879945-45897659:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 423.582221 1267.72483 0.11284 4.7797E-05 0.50791 0.00021514 0.62075 0.00026294 423.9166857345586 35.975 0.13216 35.975 35.878 36.01 0 -0.038825 -0.00015831 NaN 39.413 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1850900 34287 2182 22936 23364 0.10168135380240528 LPDLSGPHSY 10 Unmodified _LPDLSGPHSY_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2664184570312 2 543.266739 1084.51892 0.031824 1.7289E-05 -2.2223 -0.0012073 -2.1904 -0.00119 543.2666177491242 43.487 0.42298 43.487 43.204 43.627 0 47 20 4 0 0 0 0.0032765 1 23600 23600 103.75 61.909 1 24532000 34288 8633 22937 23365 40249 40249 -0.019954377990416106 LPDLSGPHSY 10 Unmodified _LPDLSGPHSY_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7820434570312 2 543.266739 1084.51892 -0.12998 -7.0615E-05 -0.10443 -5.6731E-05 -0.23441 -0.00012735 543.2663128600368 43.686 0.21575 43.376 43.272 43.488 -0.31039 10 9 2 0 0 0 0.073654 1 23228 23228 53.833 22.564 1 19504000 34289 8633 22937 23365 40250 40250 -0.019954377990416106 LPDLSGPHSY 10 Unmodified _LPDLSGPHSY_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-3|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2672729492188 2 543.266739 1084.51892 0.92735 0.0005038 -0.015522 -8.4325E-06 0.91183 0.00049537 543.2667509476548 49.42 0.39785 44.024 43.795 44.193 -5.3961 48 24 3 0 0 0 0.0045909 1 30915 30915 99.799 49.866 1 86107000 34290 8633 22937 23365 40251 40251 -0.019954377990416106 LPDNAKQCF 9 Carbamidomethyl (C) _LPDNAKQC(Carbamidomethyl (C))F_ LPDNAKQC(1)F LPDNAKQC(86)F 0 1 0 ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3;nc|ENSG00000243414|Q86XR7-2|TICAM2;nc|ENSG00000134970|Q9Y3B3-2|TMED7;ENSG00000134970|ENST00000456936|TMED7 ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000243414|Q86XR7-2|TICAM2 nc|ENSG00000243414|Q86XR7-2|TICAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7615356445312 2 546.760766 1091.50698 1.3095 0.000716 0.28202 0.0001542 1.5916 0.0008702 546.7607850471974 33.908 0.38208 29.923 29.785 30.167 -3.9853 30 20 2 0 0 0 0.0090524 1 19601 19601 85.642 43.547 1 17319000 34291 7508;16574 22938 23366 40252 40252 725 -0.035113778139020724 LPDNGHDFQ 9 Unmodified _LPDNGHDFQ_ 0 0 0 REV__ENSG00000091009|ENST00000265271|RBM27 REV__ENSG00000091009|ENST00000265271|RBM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7344360351562 2 521.733063 1041.45157 0.44501 0.00023217 2.6596 0.0013876 3.1046 0.0016198 521.7343816440884 47.146 0.33399 47.146 46.98 47.314 0 31 15 3 0 0 0 0.30562 1 25819 25819 16.942 3.8998 1 2960400 + 34292 17877 22939 23367 40253 40253 -0.06749468010002602 LPDNHSSLIY 10 Unmodified _LPDNHSSLIY_ 0 0 0 nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 nc|ENSG00000054116|O43617-2|TRAPPC3 nc|ENSG00000054116|O43617-2|TRAPPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7940673828125 2 579.793121 1157.57169 0.047478 2.7527E-05 -0.40302 -0.00023367 -0.35554 -0.00020614 579.7927306094476 45.356 0.33846 45.356 45.189 45.527 0 28 18 2 0 0 0 0.043225 1 24678 24678 61.602 1.2124 1 16422000 34293 752 22940 23368 40254 40254 -0.0007947973622322024 LPDNHSSLIY 10 Unmodified _LPDNHSSLIY_ 0 0 0 nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;ENSG00000054116|ENST00000373166|TRAPPC3 nc|ENSG00000054116|O43617-2|TRAPPC3 nc|ENSG00000054116|O43617-2|TRAPPC3 MSMS AL20221201_MKP_PDAC_01 4 579.7930297851562 2 579.793121 1157.57169 NaN NaN NaN NaN NaN NaN NaN 51.483 1 45.834 45.334 46.334 -5.649 0 0 0 0.095408 1 32400 32400 51.63 7.7715 1 34294 752 22940 23368 40255 40255 -0.0007947973622322024 LPDNLKKLF 9 Unmodified _LPDNLKKLF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.22216796875 3 363.221853 1086.64373 0.60721 0.00022055 0.17382 6.3134E-05 0.78103 0.00028369 363.2218923326241 56.922 0.43513 56.853 56.619 57.054 -0.068741 44 21 3 0 0 0 0.05483 1 30965 30965 40.725 7.8271 1 10126000 34295 9907 22941 23369 40256 40256 0.10387479408132094 LPDNLKKLF 9 Unmodified _LPDNLKKLF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20221201_MKP_PDAC_01 4 363.2225036621094 3 363.221853 1086.64373 NaN NaN NaN NaN NaN NaN NaN 79.627 1 73.451 72.951 73.951 -6.1757 0 0 0 0.15231 1 52196 52196 34.222 1.3239 1 34296 9907 22941 23369 40257 40257 0.10387479408132094 LPDNLKKLF 9 Unmodified _LPDNLKKLF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20221201_MKP_PDAC_01 4 363.2220458984375 3 363.221853 1086.64373 NaN NaN NaN NaN NaN NaN NaN 79.804 1 73.628 73.128 74.128 -6.1757 0 0 0 0.15231 1 52327 52327 34.222 1.3239 1 34297 9907 22941 23369 40258 40258 0.10387479408132094 LPDNRDWY 8 Unmodified _LPDNRDWY_ 0 0 0 REV__ENSG00000168792|ENST00000307201|ABHD15 REV__ENSG00000168792|ENST00000307201|ABHD15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7529907226562 2 539.751256 1077.48796 NaN NaN NaN NaN NaN NaN NaN 21.361 1 21.361 20.861 21.861 0 0 0 0 0.96305 1 10803 10803 7.9102 3.1541 1 + 34298 22344 22942 23370 40259 40259 -0.047685911132930414 LPDNSLKVF 9 Unmodified _LPDNSLKVF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7894897460938 2 516.78985 1031.56515 0.32802 0.00016952 0.5559 0.00028728 0.88392 0.0004568 516.790124496067 57.155 0.34137 56.665 56.474 56.816 -0.48974 27 15 2 0 0 0 0.078314 1 31034 31034 38.176 16.639 1 2897500 34299 2879 22943 23371 40260 40260 0.05062627103052364 LPDNSLPVL 9 Unmodified _LPDNSLPVL_ 0 0 0 nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2763977050781 2 484.276575 966.538597 0.27511 0.00013323 0.59118 0.0002863 0.8663 0.00041953 484.2767520739207 84.621 0.29899 84.621 84.465 84.764 0 20 13 2 0 0 0 0.18465 1 46891 46891 24.674 5.4169 1 386590 34300 1244 22944 23372 40261 40261 0.05398938211715176 LPDNVHYVF 9 Unmodified _LPDNVHYVF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2802124023438 2 552.279649 1102.54475 0.37279 0.00020588 -0.42488 -0.00023465 -0.052091 -2.8769E-05 552.2802336674677 58.442 0.27123 57.951 57.778 58.049 -0.49079 24 12 3 0 0 0 0.21589 1 31820 31820 17.113 2.7075 1 3649000 34301 640 22945 23373 40262 40262 -0.0024254355676021078 LPDNVHYVF 9 Unmodified _LPDNVHYVF_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS AL20221201_MKP_PDAC_01 4 552.2789916992188 2 552.279649 1102.54475 NaN NaN NaN NaN NaN NaN NaN 63.892 1 57.717 57.217 58.217 -6.1757 0 0 0 0.13463 1 41349 41349 27.629 3.4188 1 34302 640 22945 23373 40263 40263 -0.0024254355676021078 LPDPEDRSF 9 Unmodified _LPDPEDRSF_ 0 0 0 ENST00000362000.9_1_7:65540928-65547388:+|nuORF ENST00000362000.9_1_7:65540928-65547388:+|nuORF ENST00000362000.9_1_7:65540928-65547388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2539672851562 2 538.256371 1074.49819 0.33147 0.00017841 -0.97057 -0.00052242 -0.63911 -0.000344 538.255341031893 39.45 0.42071 39.45 39.154 39.575 0 43 19 3 0 0 0 0.033747 1 21102 21102 57.722 25.605 1 7904700 34303 12199 22946 23374 40264 40264 -0.03608028178700806 LPDPFTPNL 9 Unmodified _LPDPFTPNL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.212890625 2 507.26875 1012.52295 0.40745 0.00020669 -1.8802 -0.00095379 -1.4728 -0.0007471 507.2672476849103 79.583 0.37963 79.583 79.35 79.729 0 21 15 2 0 0 0 0.20727 1 44184 44184 7.9102 0.62092 1 378440 34304 3829 22947 23375 40265 40265 0.01718651694648088 LPDPFTPNL 9 Unmodified _LPDPFTPNL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2675170898438 2 507.26875 1012.52295 0.61229 0.0003106 -1.9283 -0.00097817 -1.316 -0.00066758 507.2669556890576 80.077 0.35262 79.588 79.403 79.755 -0.48932 24 13 3 0 0 0 0.095405 1 43836 43836 34.102 10.954 1 1331500 34305 3829 22947 23375 40266 40266 0.01718651694648088 LPDPFTPNL 9 Unmodified _LPDPFTPNL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 507.2682800292969 2 507.26875 1012.52295 NaN NaN NaN NaN NaN NaN NaN 87.632 1 81.457 80.957 81.957 -6.1757 0 0 0 0.010117 1 57794 57794 92.491 41.636 1 34306 3829 22947 23375 40267 40267 0.01718651694648088 LPDPGPPSL 9 Unmodified _LPDPGPPSL_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.7417602539062 2 446.742368 891.470183 -0.078199 -3.4935E-05 -0.95551 -0.00042687 -1.0337 -0.0004618 446.7418986919243 55.245 0.34195 55.245 55.005 55.347 0 24 14 2 0 0 0 0.011968 1 30680 30680 74.929 6.8483 1 5787900 34307 3947 22948 23376 40268 40268 0.020106936318711632 LPDPGPPSL 9 Unmodified _LPDPGPPSL_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.7417297363281 2 446.742368 891.470183 0.97605 0.00043604 -1.3382 -0.00059782 -0.36212 -0.00016177 446.7418081772023 63.356 0.39171 57.18 57 57.391 -6.1757 35 22 2 0 0 0 0.022193 2 40905 40905;41077 61.357 0 1 17283000 34308 3947 22948 23376 40269;40270 40269 0.020106936318711632 LPDPGPPSL 9 Unmodified _LPDPGPPSL_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 446.742368 891.470183 -0.1029 -4.5969E-05 -2.2354 -0.00099865 -2.3383 -0.0010446 446.741299068222 55.797 0.3276 55.319 55.173 55.5 -0.47798 0.03721 -0.00040448 NaN 74.929 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4958500 34309 3947 22948 23376 0.020106936318711632 LPDPGSPRL 9 Unmodified _LPDPGSPRL_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2661743164062 2 476.266542 950.51853 -0.060268 -2.8704E-05 -1.1796 -0.00056181 -1.2399 -0.00059051 476.2659550336763 40.545 0.32899 40.545 40.391 40.72 0 38 17 3 0 0 0 0.05483 1 21807 21807 43.772 13.136 1 13726000 34310 9665 22949 23377 40271 40271 0.04129187271757928 LPDPGSPRL 9 Unmodified _LPDPGSPRL_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2663269042969 2 476.266542 950.51853 0.51314 0.00024439 -0.99652 -0.00047461 -0.48338 -0.00023022 476.26588731523407 40.915 0.2774 40.612 40.461 40.738 -0.30304 30 13 3 0 0 0 0.10247 1 21660 21660 32.786 12.332 1 7956900 34311 9665 22949 23377 40272 40272 0.04129187271757928 LPDPGSPRL 9 Unmodified _LPDPGSPRL_ 0 0 0 ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G ENSG00000188522|ENST00000388995|FAM83G MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2686767578125 2 476.266542 950.51853 0.53711 0.00025581 2.1827 0.0010395 2.7198 0.0012953 476.2679907969377 46.283 0.35155 41.329 41.119 41.471 -4.9549 51 23 3 0 0 0 0.085319 1 28507 28507 36.506 10.165 1 46455000 34312 9665 22949 23377 40273 40273 0.04129187271757928 LPDPIIIHL 9 Unmodified _LPDPIIIHL_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.81787109375 2 515.81841 1029.62227 0.44049 0.00022721 0.53748 0.00027724 0.97797 0.00050445 515.8185257611967 84.249 0.31421 83.749 83.594 83.909 -0.49961 34 13 3 0 0 0 0.016184 2 46082 46082;46175 67.344 42.67 1 1954300 34313 16193 22950 23378 40274;40275 40274 0.10864094379417111 LPDPIIIHL 9 Unmodified _LPDPIIIHL_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8192749023438 2 515.81841 1029.62227 1.1788 0.00060804 2.0852 0.0010756 3.2639 0.0016836 515.8200359081599 97.916 0.23984 91.741 91.577 91.817 -6.1757 33 15 3 0 0 0 0.0083087 1 64875 64875 97.075 50.154 1 26485000 34314 16193 22950 23378 40276 40276 0.10864094379417111 LPDPLQEPY 9 Unmodified _LPDPLQEPY_ 0 0 0 ENST00000595961.5_1_19:39976255-39976534:+|nuORF;nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50 ENST00000595961.5_1_19:39976255-39976534:+|nuORF ENST00000595961.5_1_19:39976255-39976534:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2715454101562 2 536.27149 1070.52843 0.22983 0.00012325 -0.21532 -0.00011547 0.014504 7.7779E-06 536.271326091434 64.426 0.48253 64.426 64.168 64.65 0 36 23 2 0 0 0 0.10734 1 35951 35951 32.305 11.434 1 1288600 34315 2286 22951 23379 40277 40277 -0.004016695135305781 LPDPNVQKY 9 Unmodified _LPDPNVQKY_ 0 0 0 ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2846069335938 2 537.284931 1072.55531 -0.44336 -0.00023821 -0.25711 -0.00013814 -0.70048 -0.00037635 537.2850438561416 34.343 0.27071 34.343 34.207 34.478 0 32 13 3 0 0 0 0.036857 1 18073 18073 51.63 29.883 1 5082600 34316 5382 22952 23380 40278 40278 0.021934390976639406 LPDPNVQKY 9 Unmodified _LPDPNVQKY_ 0 0 0 ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 ENSG00000141956|ENST00000398548|PRDM15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.28759765625 2 537.284931 1072.55531 0.76968 0.00041354 0.93192 0.00050071 1.7016 0.00091424 537.2858909566511 39.516 0.31088 35.065 34.796 35.107 -4.4509 30 18 2 0 0 0 0.01958 1 23402 23402 63.961 31.655 1 10627000 34317 5382 22952 23380 40279 40279 0.021934390976639406 LPDPPRSSY 9 Unmodified _LPDPPRSSY_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2611694335938 2 516.261456 1030.50836 0.14351 7.4091E-05 0.65135 0.00033627 0.79487 0.00041036 516.2615480413825 31.153 0.50539 31.153 30.892 31.398 0 41 24 2 0 0 0 0.15471 1 16242 16242 27.629 3.6082 1 1337200 34318 16152 22953 23381 40280 40280 -0.005674204534670935 LPDPSRFTL 9 Unmodified _LPDPSRFTL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2880249023438 2 523.287474 1044.5604 0.24012 0.00012565 -0.31326 -0.00016392 -0.073134 -3.827E-05 523.2873268004673 62.659 0.41808 62.637 62.393 62.811 -0.021614 40 21 2 0 0 0 0.014417 1 34218 34218 69.105 1.0242 1 7839200 34319 2724 22954 23382 40281 40281 0.039897429602888224 LPDPSRFTL 9 Unmodified _LPDPSRFTL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.287474 1044.5604 0.32461 0.00016987 -1.1243 -0.00058831 -0.79964 -0.00041844 523.2870592060206 63.057 0.34863 62.571 62.423 62.771 -0.48617 -0.10558 -0.00048512 NaN 69.105 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2874200 34320 2724 22954 23382 0.039897429602888224 LPDPSRFTL 9 Unmodified _LPDPSRFTL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 523.287474 1044.5604 1.0923 0.00057158 -1.9234 -0.0010065 -0.8311 -0.0004349 523.2874106597925 68.997 0.477 62.821 62.518 62.995 -6.1757 0.1449 -0.0013215 NaN 69.105 46 25 3 NaN NaN NaN NaN 0 NaN NaN 0 25723000 34321 2724 22954 23382 0.039897429602888224 LPDPTPMQYF 10 Unmodified _LPDPTPMQYF_ 0 0 0 REV__ENSG00000108510|ENST00000397786|MED13 REV__ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7864379882812 2 604.78645 1207.55835 -0.34524 -0.0002088 1.3197 0.00079815 0.97449 0.00058936 604.7866663321213 98.816 0.21996 92.64 92.52 92.74 -6.1757 26 16 2 0 0 0 0.42068 1 65568 65568 20.454 0 1 39950000 + 34322 18611 22955 23383 40282 40282 -0.037130538398514545 LPDPYESERVY 11 Unmodified _LPDPYESERVY_ 0 0 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.3269653320312 2 684.327524 1366.6405 0.071855 4.9172E-05 -0.72392 -0.0004954 -0.65207 -0.00044623 684.327052611842 45.73 0.33354 45.73 45.567 45.9 0 35 16 3 0 0 0 0.0045481 1 24917 24917 81.915 46.983 1 13985000 34323 5694 22956 23384 40283 40283 -0.028158602272014832 LPDPYESERVY 11 Unmodified _LPDPYESERVY_ 0 0 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.3268432617188 2 684.327524 1366.6405 1.009 0.00069049 -0.51033 -0.00034923 0.49867 0.00034126 684.3273168067954 52.339 0.28042 46.604 46.484 46.764 -5.7345 32 15 3 0 0 0 1.1285E-08 1 33023 33023 118.21 77.97 1 33246000 34324 5694 22956 23384 40284 40284 -0.028158602272014832 LPDQKQLRY 9 Unmodified _LPDQKQLRY_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5526428222656 3 387.552262 1159.63496 -0.34714 -0.00013453 0.96498 0.00037398 0.61784 0.00023945 387.5526679475506 29.33 0.26951 29.33 29.182 29.451 0 42 12 5 0 0 0 0.076472 1 15152 15152 38.615 23.366 1 14692000 34325 9379 22957 23385 40285 40285 0.06152505771660799 LPDQKQLRY 9 Unmodified _LPDQKQLRY_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5518188476562 3 387.552262 1159.63496 0.63456 0.00024592 -0.081491 -3.1582E-05 0.55307 0.00021434 387.5521665446292 29.281 0.21379 29.219 29.084 29.298 -0.06216 21 9 3 0 0 0 0.024189 1 15116 15116 59.368 37.569 1 11219000 34326 9379 22957 23385 40286 40286 0.06152505771660799 LPDQKQLRY 9 Unmodified _LPDQKQLRY_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.55322265625 3 387.552262 1159.63496 0.85048 0.00032961 0.035511 1.3762E-05 0.88599 0.00034337 387.552331279682 32.92 0.41803 29.064 28.854 29.272 -3.8562 64 25 3 0 0 0 0.037253 2 18771 18771;18903 51.415 29.616 1 118770000 34327 9379 22957 23385 40287;40288 40287 0.06152505771660799 LPDQKQLRY 9 Unmodified _LPDQKQLRY_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8251953125 2 580.824755 1159.63496 0.45263 0.0002629 -0.46113 -0.00026784 -0.0084983 -4.936E-06 580.8244912553782 32.956 0.23376 29.099 28.924 29.158 -3.8562 19 13 2 0 0 0 0.0039769 1 18825 18825 145.13 77.049 1 15881000 34328 9379 22957 23385 40289 40289 0.06152505771660799 LPDQSHPAL 9 Unmodified _LPDQSHPAL_ 0 0 0 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant;ENSG00000181481|ENST00000328381|RNF135 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2562866210938 2 489.256174 976.497795 NaN NaN NaN NaN NaN NaN NaN 32.638 1 32.638 32.138 33.138 0 0 0 0 0.22437 1 17068 17068 29.082 9.8246 1 34329 8975 22958 23386 40290 40290 0.00860596892096055 LPDQSHPAL 9 Unmodified _LPDQSHPAL_ 0 0 0 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant;ENSG00000181481|ENST00000328381|RNF135 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2562255859375 2 489.256174 976.497795 1.1963 0.00058529 -2.7613 -0.001351 -1.565 -0.00076568 489.2547815002535 37.224 0.35493 32.94 32.765 33.12 -4.2835 24 21 2 0 0 0 0.21643 1 21845 21845 21.537 0.66577 1 6284900 34330 8975 22958 23386 40291 40291 0.00860596892096055 LPDQTLPIL 9 Unmodified _LPDQTLPIL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.3016052246094 2 505.30005 1008.58555 0.45891 0.00023189 0.21639 0.00010934 0.6753 0.00034123 505.3001092935538 82.8 0.37395 82.8 82.61 82.984 0 38 16 3 0 0 0 0.2143 2 45886 45886;45987 21.747 5.8995 1 1086800 34331 4627 22959 23387 40292;40293 40292 0.08159797762868948 LPDQTLPIL 9 Unmodified _LPDQTLPIL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.3008728027344 2 505.30005 1008.58555 0.10104 5.1057E-05 0.89526 0.00045237 0.9963 0.00050343 505.3006421826097 83.26 0.42909 82.763 82.533 82.962 -0.49751 42 16 3 0 0 0 0.05447 2 45550 45550;45656 43.858 11.553 1 2113800 34332 4627 22959 23387 40294;40295 40294 0.08159797762868948 LPDQTLPIL 9 Unmodified _LPDQTLPIL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3000183105469 2 505.30005 1008.58555 1.1657 0.00058904 -0.040551 -2.049E-05 1.1252 0.00056855 505.3000663495362 90.572 0.50392 84.396 84.156 84.659 -6.1757 49 29 2 0 0 0 0.013041 2 59759 59759;59924 71.922 19.654 1 24955000 34333 4627 22959 23387 40296;40297 40296 0.08159797762868948 LPDQVLRVF 9 Unmodified _LPDQVLRVF_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8192138671875 2 543.818941 1085.62333 0.32396 0.00017618 -1.6681 -0.00090712 -1.3441 -0.00073094 543.8174306225951 71.925 0.37776 71.449 71.216 71.594 -0.47609 32 14 3 0 0 0 0.047788 2 39303 39303;39401 45.7 0 1 3081900 34334 2669 22960 23388 40298;40299 40298 0.08394308748324875 LPDQVLRVF 9 Unmodified _LPDQVLRVF_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8170166015625 2 543.818941 1085.62333 0.97352 0.00052942 1.7212 0.00093601 2.6947 0.0014654 543.8199456882394 71.331 0.46916 71.37 71.13 71.599 0.039024 65 20 4 0 0 0 0.011671 2 39285 39210;39285 75.761 0 1 16710000 34335 2669 22960 23388 40300;40301 40301 0.08394308748324875 LPDQVLRVF 9 Unmodified _LPDQVLRVF_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8192138671875 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 65.976 1 65.985 65.485 66.485 0.0095596 0 0 0 0.022863 1 36176 36176 74.929 0 1 34336 2669 22960 23388 40302 40302 0.08394308748324875 LPDQVLRVF 9 Unmodified _LPDQVLRVF_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8179321289062 2 543.818941 1085.62333 0.62586 0.00034036 -0.90638 -0.00049291 -0.28052 -0.00015255 543.8185853296607 84.264 0.81753 78.089 77.645 78.463 -6.1757 74 45 2 0 0 0 0.010301 4 55302 55175;55302;55425;55563 79.596 0 1 17804000 34337 2669 22960 23388 40303;40304;40305;40306 40304 0.08394308748324875 LPDQVLRVF 9 Unmodified _LPDQVLRVF_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MSMS AL20221201_MKP_PDAC_01 4 543.8203735351562 2 543.818941 1085.62333 NaN NaN NaN NaN NaN NaN NaN 74.786 1 68.61 68.11 69.11 -6.1757 0 0 0 0.047623 1 48895 48895 58.679 0 1 34338 2669 22960 23388 40307 40307 0.08394308748324875 LPDRALVNCQY 11 Carbamidomethyl (C) _LPDRALVNC(Carbamidomethyl (C))QY_ LPDRALVNC(1)QY LPDRALVNC(120)QY 0 1 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.8386840820312 2 674.837536 1347.66052 1.4634 0.00098759 -0.28248 -0.00019063 1.181 0.00079697 674.837524394017 47.755 0.52715 42.521 42.229 42.756 -5.2339 114 31 5 0 0 0 6.1613E-11 3 29787 29523;29650;29787 121.5 91.941 1 199800000 34339 8779 22961 23389 40308;40309;40310 40310 833 0.0005961223175745545 LPDRDPDSDG 10 Unmodified _LPDRDPDSDG_ 0 0 0 nc|ENSG00000170419|Q8TAG5|VSTM2A;ENSG00000170419|ENST00000402613|VSTM2A;nc|ENSG00000170419|Q8TAG5-2|VSTM2A nc|ENSG00000170419|Q8TAG5|VSTM2A nc|ENSG00000170419|Q8TAG5|VSTM2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.273193359375 2 543.738542 1085.46253 1.2127 0.0006594 0.39374 0.00021409 1.6065 0.00087349 543.7390705940717 34.051 0.47264 30.065 29.765 30.238 -3.9853 82 25 4 0 0 0 0.23634 1 19647 19647 1.4819 0 1 58738000 34340 7983 22962 23390 40311 40311 -0.07678110426377316 LPDRGWFVY 9 Unmodified _LPDRGWFVY_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.795654296875 2 576.795466 1151.57638 1.4137 0.00081542 0.13852 7.9895E-05 1.5522 0.00089532 576.7956400928603 70.953 0.44282 70.988 70.785 71.228 0.035515 37 19 2 0 0 0 0.01861 2 39015 39015;39124 70.332 56.426 1 16769000 34341 3478 22963 23391 40312;40313 40312 0.006654491971858079 LPDRLLLLF 9 Unmodified _LPDRLLLLF_ 0 0 0 REV__ENST00000395076.8_1_14:60716117-60716189:+|nuORF REV__ENST00000395076.8_1_14:60716117-60716189:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3477172851562 2 550.347335 1098.68012 0.79887 0.00043966 0.18189 0.0001001 0.98076 0.00053976 550.3473432848033 101.5 0.1209 95.32 95.252 95.373 -6.1757 9 5 2 0 0 0 0.30202 1 68121 68121 17.113 0.96379 1 20505000 + 34342 26466 22964 23392 40314 40314 0.1347235630485102 LPDRQRRAL 9 Unmodified _LPDRQRRAL_ 0 0 0 REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5598449707031 3 375.559751 1123.65742 0.70546 0.00026494 -0.12186 -4.5765E-05 0.58361 0.00021918 375.5596135187311 24.776 0.33732 21.893 21.686 22.023 -2.8831 50 19 3 0 0 0 0.2546 1 13440 13440 19.362 19.362 1 20648000 + 34343 20691 22965 23393 40315 40315 0.10054149959933056 LPDRRGLYL 9 Unmodified _LPDRRGLYL_ 0 0 0 ENST00000400188.7_1_15:26866640-26874217:-|nuORF ENST00000400188.7_1_15:26866640-26874217:-|nuORF ENST00000400188.7_1_15:26866640-26874217:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.217529296875 3 368.217102 1101.62948 0.40053 0.00014748 0.58292 0.00021464 0.98345 0.00036212 368.21734153068644 47.976 0.58314 47.937 47.62 48.203 -0.038643 95 28 4 0 0 0 0.34999 1 25844 25844 10.151 0.6066 1 108100000 34344 12870 22966 23394 40316 40316 0.08272826979850834 LPDRSLPAL 9 Unmodified _LPDRSLPAL_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2900390625 2 491.290017 980.565481 0.56953 0.0002798 -0.25266 -0.00012413 0.31686 0.00015567 491.2897928617245 52.815 0.47193 52.364 52.102 52.574 -0.45173 39 23 2 0 0 0 0.1685 2 28505 28505;28628 26.268 4.5674 1 2667800 34345 6963 22967 23395 40317;40318 40317 0.07442046822893644 LPDRSLPAL 9 Unmodified _LPDRSLPAL_ 0 0 0 nc|ENSG00000163166|Q96ST2-2|IWS1;nc|ENSG00000163166|Q96ST2-3|IWS1;ENSG00000163166|ENST00000295321|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 nc|ENSG00000163166|Q96ST2-2|IWS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.290017 980.565481 -0.012963 -6.3685E-06 0.81172 0.00039879 0.79876 0.00039242 491.2903257513585 52.354 0.24396 52.354 52.199 52.443 0 -0.0045534 0.00075904 NaN 26.268 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 691580 34346 6963 22967 23395 0.07442046822893644 LPDSAEGHF 9 Unmodified _LPDSAEGHF_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7245788574219 2 486.724707 971.43486 0.4059 0.00019756 -1.0039 -0.0004886 -0.59797 -0.00029105 486.7242491175223 58.075 0.75067 58.075 57.716 58.467 0 54 30 2 0 0 0 0.39863 1 32237 32237 12.532 0.89125 1 4870900 34347 1438 22968 23396 40319 40319 -0.05199968895942675 LPDSEFLKI 9 Unmodified _LPDSEFLKI_ 0 0 0 ENSG00000174951|ENST00000645652|FUT1 ENSG00000174951|ENST00000645652|FUT1 ENSG00000174951|ENST00000645652|FUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2974243164062 2 531.297507 1060.58046 0.050642 2.6906E-05 0.50285 0.00026716 0.55349 0.00029407 531.2976761626905 71.558 0.57738 71.558 71.346 71.923 0 73 26 5 0 0 0 0.41742 1 39983 39983 11.64 0 1 20991000 34348 8473 22969 23397 40320 40320 0.05259493900234702 LPDSGHLHPL 10 Unmodified _LPDSGHLHPL_ 0 0 0 ENST00000592662.5_1_19:13039347-13044510:-|nuORF;nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA ENST00000592662.5_1_19:13039347-13044510:-|nuORF ENST00000592662.5_1_19:13039347-13044510:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5292053222656 3 362.529458 1084.56654 0.25996 9.4242E-05 -0.2782 -0.00010086 -0.018246 -6.6148E-06 362.86364510160627 36.113 0.23648 36.113 35.993 36.229 0 19 11 2 0 0 0 0.2178 1 19138 19138 27.223 11.485 1 6124300 34349 8812 22970 23398 40321 40321 0.027642611918281546 LPDSGVVEY 9 Unmodified _LPDSGVVEY_ 0 0 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.4790649414062 1 978.477854 977.470577 0.6581 0.00064394 -0.28776 -0.00028157 0.37034 0.00036237 978.4775176083158 47.71 0.29354 47.71 47.558 47.852 0 23 13 2 0 0 0 0.0095811 1 26086 26086 81.613 33.267 1 4914000 34350 2956;5102 22971 23399 40322 40322 -0.01905931438955122 LPDSHSYTM 9 Oxidation (M) _LPDSHSYTM(Oxidation (M))_ LPDSHSYTM(1) LPDSHSYTM(100) 0 0 1 ENSG00000266714|ENST00000645453|MYO15B;ENST00000579048.4_1_17:73617188-73617694:+|nuORF ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.728515625 2 533.729132 1065.44371 -0.080191 -4.28E-05 0.0094275 5.0317E-06 -0.070764 -3.7769E-05 533.7290532986319 25.232 0.21461 22.348 22.3 22.514 -2.8831 19 12 2 0 0 0 0.0085164 1 13827 13827 99.799 63.755 1 6082100 34351 10865 22972 23400 40323 40323 1732 -0.08639363321799465 LPDSQYNGNP 10 Unmodified _LPDSQYNGNP_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1 ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7721557617188 2 552.751453 1103.48835 0.70974 0.00039231 -2.2446 -0.0012407 -1.5348 -0.00084839 552.7505516636509 72.165 0.093956 71.689 71.615 71.709 -0.47609 5 3 2 0 0 0 0.66569 1 39464 39464 6.7232 1.4925 1 371920 34352 5787 22973 23401 40324 40324 -0.05925216184095916 LPDSSSPVP 9 Unmodified _LPDSSSPVP_ 0 0 0 nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61022465-61024292:+|nuORF nc|ENSG00000115421|Q9BWT3-2|PAPOLG nc|ENSG00000115421|Q9BWT3-2|PAPOLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7287902832031 2 449.729458 897.444362 0.30207 0.00013585 0.26545 0.00011938 0.56752 0.00025523 449.7294558145545 65.034 0.23388 65.034 64.936 65.169 0 15 10 2 0 0 0 0.038285 1 36277 36277 50.855 4.8341 1 1051700 34353 3123 22974 23402 40325 40325 -0.008462006104196007 LPDSTRQKI 9 Unmodified _LPDSTRQKI_ 0 0 0 nc|ENSG00000007372|P26367|PAX6;ENSG00000007372|ENST00000640368|PAX6;chr11:31811015-31817809|126|10.42|0.6|4.11|-|ENST00000638914|PAX6,PAX6 nc|ENSG00000007372|P26367|PAX6 nc|ENSG00000007372|P26367|PAX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3002319335938 2 529.303655 1056.59276 -0.77956 -0.00041262 -2.6215 -0.0013876 -3.401 -0.0018002 529.3005507773354 78.062 0.30051 77.58 77.481 77.782 -0.4826 57 19 5 0 0 0 0.28047 1 42784 42784 18.135 0 1 3954800 34354 70 22975 23403 40326 40326 0.06672530363289297 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2170104980469 3 368.217102 1101.62948 0.47197 0.00017379 -0.33251 -0.00012244 0.13945 5.1349E-05 368.2169150069636 48.248 0.33007 47.895 47.709 48.039 -0.35314 23 16 2 0 0 0 0.28023 1 25888 25888 12.873 2.722 1 1795800 34355 3109 22976 23404 40327 40327 0.08272826979850834 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2167053222656 3 368.217102 1101.62948 0.40053 0.00014748 0.58292 0.00021464 0.98345 0.00036212 368.21734153068644 47.976 0.58314 47.937 47.62 48.203 -0.038643 95 28 4 0 0 0 0.19127 1 25744 25744 17.443 3.0373 1 108100000 34356 3109 22976 23404 40328 40328 0.08272826979850834 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8236083984375 2 551.822015 1101.62948 0.48387 0.00026701 1.2369 0.00068256 1.7208 0.00094957 551.8222852508984 47.97 0.42175 47.931 47.7 48.122 -0.038647 50 20 3 0 0 0 0.094149 2 25821 25821;25924 34.402 7.5181 1 10028000 34357 3109 22976 23404 40329;40330 40329 0.08272826979850834 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8224487304688 2 551.822015 1101.62948 0.57967 0.00031988 1.7507 0.00096607 2.3304 0.001286 551.8217869532492 53.188 0.41763 47.384 47.199 47.617 -5.8042 58 25 3 0 0 0 0.0071894 2 33560 33560;33717 111.29 53.816 1 43171000 34358 3109 22976 23404 40331;40332 40331 0.08272826979850834 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2177734375 3 368.217102 1101.62948 1.2185 0.00044868 0.046788 1.7228E-05 1.2653 0.00046591 368.21711215678823 53.193 0.51726 47.388 47.159 47.676 -5.8042 79 31 3 0 0 0 0.19127 1 33623 33623 17.443 0 1 144620000 34359 3109 22976 23404 40333 40333 0.08272826979850834 LPDSVLRRF 9 Unmodified _LPDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.21728515625 3 368.217102 1101.62948 1.4522 0.00053471 0.30769 0.0001133 1.7599 0.00064801 368.2172192337012 63.349 0.66714 57.173 56.896 57.564 -6.1757 61 37 2 0 0 0 0.25681 1 40845 40845 13.615 0 1 17131000 34360 3109 22976 23404 40334 40334 0.08272826979850834 LPDTCFRM 8 Carbamidomethyl (C) _LPDTC(Carbamidomethyl (C))FRM_ LPDTC(1)FRM LPDTC(74)FRM 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2387084960938 2 520.238612 1038.46267 1.0261 0.00053381 -0.69347 -0.00036077 0.33263 0.00017305 520.2386155962995 55.668 0.44398 49.747 49.525 49.969 -5.9211 62 26 3 0 0 0 0.18875 1 35448 35448 74.423 14.033 1 36547000 34361 16067;16068 22977 23405 40335 40335 1003 -0.055021052317215435 LPDTLKVTY 9 Unmodified _LPDTLKVTY_ 0 0 0 ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.296875 2 525.297507 1048.58046 0.80761 0.00042424 -2.5201 -0.0013238 -1.7125 -0.00089956 525.2972055648063 50.886 0.36542 50.886 50.744 51.109 0 49 21 3 0 0 0 0.062454 1 28023 28023 41.956 14.327 1 16926000 34362 6708 22978 23406 40336 40336 0.058114939002507526 LPDTLKVTY 9 Unmodified _LPDTLKVTY_ 0 0 0 ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2976684570312 2 525.297507 1048.58046 -0.30228 -0.00015879 -0.095746 -5.0295E-05 -0.39803 -0.00020908 525.2974875566579 51.411 0.35823 50.997 50.798 51.156 -0.41351 47 18 3 0 0 0 0.0087923 2 27658 27658;27764 103.42 41.818 1 39350000 34363 6708 22978 23406 40337;40338 40337 0.058114939002507526 LPDTLKVTY 9 Unmodified _LPDTLKVTY_ 0 0 0 ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2979125976562 2 525.297507 1048.58046 0.15326 8.0506E-05 -0.93577 -0.00049156 -0.78251 -0.00041105 525.296661450188 51.065 0.22482 51.012 50.862 51.087 -0.053875 20 10 3 0 0 0 0.05483 1 27628 27628 43.772 16.889 1 1996000 34364 6708 22978 23406 40339 40339 0.058114939002507526 LPDTLKVTY 9 Unmodified _LPDTLKVTY_ 0 0 0 ENST00000475170.5_1_21:46306285-46313576:-|nuORF;ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46313282-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF ENST00000475170.5_1_21:46306285-46313576:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.29833984375 2 525.297507 1048.58046 1.0356 0.00054397 1.4957 0.00078568 2.5312 0.0013297 525.2975285440381 57.377 0.67766 51.35 50.988 51.666 -6.0275 119 37 4 0 0 0 0.033587 2 36756 36756;36892 53.404 16.698 1 167710000 34365 6708 22978 23406 40340;40341 40340 0.058114939002507526 LPDTQITSY 9 Unmodified _LPDTQITSY_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000498780.5_1_2:201862166-201888732:-|nuORF;ENST00000474118.5_1_2:201887514-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2612915039062 2 519.261122 1036.50769 0.907 0.00047097 -0.74989 -0.00038939 0.15711 8.1581E-05 519.2607332240478 54.161 0.064957 54.161 54.132 54.197 0 6 2 3 0 0 0 0.16226 1 30073 30073 26.884 5.3467 1 39794000 34366 6405 22979 23407 40342 40342 -0.00910259893203147 LPDTQYFI 8 Unmodified _LPDTQYFI_ 0 0 0 nc|ENSG00000018236|Q12860-2|CNTN1;ENSG00000018236|ENST00000551295|CNTN1 nc|ENSG00000018236|Q12860-2|CNTN1 nc|ENSG00000018236|Q12860-2|CNTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7554321289062 2 498.755475 995.496398 0.36887 0.00018398 1.4171 0.00070681 1.786 0.00089078 498.7562838174841 86.085 0.37892 85.582 85.366 85.745 -0.50318 33 14 3 0 0 0 0.80143 1 47180 47180 5.7604 2.8712 1 1437100 34367 507 22980 23408 40343 40343 -0.0015303719667372206 LPDTRSEAY 9 Unmodified _LPDTRSEAY_ 0 0 0 nc|ENSG00000129315|O60563-2|CCNT1;ENSG00000129315|ENST00000261900|CCNT1 nc|ENSG00000129315|O60563-2|CCNT1 nc|ENSG00000129315|O60563-2|CCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2559204101562 2 526.256371 1050.49819 -0.10449 -5.4989E-05 -0.10727 -5.6452E-05 -0.21176 -0.00011144 526.2563281930247 25.793 0.33137 25.793 25.634 25.965 0 38 15 3 0 0 0 0.05483 2 13202 13202;13303 43.772 18.373 1 6848300 34368 4129 22981 23409 40344;40345 40344 -0.025040281787141794 LPDTWSVQL 9 Unmodified _LPDTWSVQL_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7835083007812 2 529.779482 1057.54441 0.78602 0.00041642 -2.9693 -0.0015731 -2.1833 -0.0011567 529.7782762683984 57.707 0.3973 57.641 57.378 57.775 -0.066036 43 19 3 0 0 0 0.23158 1 31334 31334 20.454 0 1 5844600 34369 4767 22982 23410 40346 40346 0.017940367233904908 LPDVEALRFY 10 Unmodified _LPDVEALRFY_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENST00000427635.6_1_10:69747892-69752485:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MSMS AL20221201_MKP_PDAC_01 4 611.8241577148438 2 611.826963 1221.63937 NaN NaN NaN NaN NaN NaN NaN 89.454 1 83.278 82.778 83.778 -6.1757 0 0 0 0.36315 1 59050 59050 33.445 3.6043 1 34370 5949 22983 23411 40347 40347 0.03741970194573696 LPDVPRIFL 9 Unmodified _LPDVPRIFL_ 0 0 0 ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498209.6_1_11:2937879-2942743:+|nuORF;ENST00000467719.5_1_11:2937762-2940985:+|nuORF ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2823486328125 2 535.32386 1068.63317 0.8665 0.00046386 -1.6886 -0.00090397 -0.82214 -0.00044011 535.8238681778788 98.506 0.12214 92.33 92.267 92.389 -6.1757 12 8 2 0 0 0 0.044011 2 65355 65340;65355 47.749 23.728 1 15738000 34371 2728 22984 23412 40348;40349 40349 0.10159496753703934 LPDVSLGRYAY 11 Unmodified _LPDVSLGRYAY_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000596008.1_1_19:7591330-7591862:+|nuORF;ENST00000394321.9_1_19:7587636-7592563:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3302001953125 2 627.32987 1252.64519 -0.2845 -0.00017847 1.2164 0.00076309 0.93191 0.00058462 627.3303824578069 60.664 0.26108 60.175 60.03 60.291 -0.48932 23 11 3 0 0 0 0.22582 1 33022 33022 30.703 8.0454 1 4254600 34372 1566 22985 23413 40350 40350 0.028970687062610523 LPDVSLGRYAY 11 Unmodified _LPDVSLGRYAY_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000596008.1_1_19:7591330-7591862:+|nuORF;ENST00000394321.9_1_19:7587636-7592563:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.331298828125 2 627.32987 1252.64519 0.40469 0.00025387 0.45071 0.00028274 0.8554 0.00053662 627.3305756617762 67.88 0.43452 61.704 61.402 61.837 -6.1757 35 24 2 0 0 0 0.038834 1 44298 44298 53.317 19.872 1 13945000 34373 1566 22985 23413 40351 40351 0.028970687062610523 LPDVSLQEF 9 Unmodified _LPDVSLQEF_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2718505859375 2 524.27149 1046.52843 1.063 0.00055732 1.2968 0.00067986 2.3598 0.0012372 524.2722321639225 83.578 0.73648 77.403 76.964 77.7 -6.1757 82 38 3 0 0 0 0.03568 1 55002 55002 52.268 26.869 1 17570000 34374 2094 22986 23414 40352 40352 0.007023304865015234 LPDVVCELSLL 11 Unmodified _LPDVVCELSLL_ 0 0 0 ENSG00000198812|ENST00000361484|LRRC10 ENSG00000198812|ENST00000361484|LRRC10 ENSG00000198812|ENST00000361484|LRRC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8327026367188 2 600.830857 1199.64716 0.37419 0.00022483 2.1041 0.0012642 2.4783 0.001489 600.8323021274177 40.178 0.24856 39.881 39.759 40.008 -0.29716 19 11 2 0 0 0 0.14064 1 21240 21240 26.268 5.6872 1 1800600 34375 10160 22987 23415 40353 40353 0.05532361399832553 LPDYLQERF 9 Unmodified _LPDYLQERF_ 0 0 0 nc|ENSG00000162670|Q76B58-2|BRINP3;ENSG00000162670|ENST00000367462|BRINP3 nc|ENSG00000162670|Q76B58-2|BRINP3 nc|ENSG00000162670|Q76B58-2|BRINP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8036499023438 2 590.803488 1179.59242 0.19022 0.00011238 -1.4065 -0.00083098 -1.2163 -0.0007186 590.8033076824373 55.127 0.21887 55.058 54.939 55.158 -0.068737 12 10 2 0 0 0 0.1773 1 29967 29967 25.399 2.663 1 2240100 34376 6891 22988 23416 40354 40354 0.009811106434199246 LPDYNKISF 9 Unmodified _LPDYNKISF_ 0 0 0 nc|ENSG00000156345|Q8IZL9-3|CDK20;nc|ENSG00000156345|Q8IZL9-5|CDK20;nc|ENSG00000156345|Q8IZL9-4|CDK20;ENSG00000156345|ENST00000325303|CDK20;ENST00000603475.1_1_9:90584039-90584273:-|nuORF;ENST00000459720.5_1_9:90582379-90584273:-|nuORF;ENST00000486228.7_1_9:90582379-90585754:-|nuORF nc|ENSG00000156345|Q8IZL9-3|CDK20 nc|ENSG00000156345|Q8IZL9-3|CDK20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.788330078125 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 57.366 1 56.876 56.376 57.376 -0.48974 0 0 0 0.16996 1 31175 31175 34.402 6.7729 1 34377 6449 22989 23417 40355 40355 0.016103232404248047 LPDYTTYSPH 10 Unmodified _LPDYTTYSPH_ 0 0 0 ENST00000529805.1_1_11:105867080-105880474:-|nuORF ENST00000529805.1_1_11:105867080-105880474:-|nuORF ENST00000529805.1_1_11:105867080-105880474:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2791137695312 2 597.277303 1192.54005 NaN NaN NaN NaN NaN NaN NaN 67.942 1 67.46 66.96 67.96 -0.48218 0 0 0 0.64375 1 37124 37124 19.257 4.6753 1 34378 14878 22990 23418 40356 40356 -0.04851472490213382 LPDYYKWTQY 10 Unmodified _LPDYYKWTQY_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.8292846679688 2 688.829703 1375.64485 0.10177 7.0102E-05 -0.84703 -0.00058346 -0.74526 -0.00051336 688.829033413061 58.218 0.63897 58.218 57.944 58.583 0 77 25 4 0 0 0 0.42068 3 32449 32335;32449;32552 20.454 6.0482 1 17093000 34379 444 22991 23419 40357;40358;40359 40358 -0.02794351013631058 LPDYYKWTQY 10 Unmodified _LPDYYKWTQY_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 688.8295288085938 2 688.829703 1375.64485 0.23397 0.00016116 -0.76249 -0.00052523 -0.52853 -0.00036406 688.8291739968587 58.942 0.49667 58.451 58.232 58.729 -0.49079 73 23 4 0 0 0 0.52888 3 32082 31985;32082;32189 14.838 8.1151 1 14229000 34380 444 22991 23419 40360;40361;40362 40361 -0.02794351013631058 LPDYYKWTQY 10 Unmodified _LPDYYKWTQY_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.8292236328125 2 688.829703 1375.64485 0.66196 0.00045598 -1.0048 -0.00069215 -0.34286 -0.00023617 688.828875619547 66.192 0.64502 60.017 59.723 60.368 -6.1757 111 36 4 0 0 0 0.24625 3 42873 42873;43009;43148 30.637 5.6456 1 155290000 34381 444 22991 23419 40363;40364;40365 40363 -0.02794351013631058 LPDYYKWTQY 10 Unmodified _LPDYYKWTQY_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 688.829703 1375.64485 0.74025 0.00050991 -1.3622 -0.0009383 -0.62191 -0.00042839 688.8286872756302 58.531 0.24863 58.47 58.394 58.643 -0.060719 0.090519 -0.00069761 NaN 20.454 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1486000 34382 444 22991 23419 -0.02794351013631058 LPEAAINDVY 10 Unmodified _LPEAAINDVY_ 0 0 0 ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7820434570312 2 552.782222 1103.54989 0.44268 0.00024471 -0.7791 -0.00043067 -0.33642 -0.00018597 552.7816203480073 56.723 0.24582 56.723 56.609 56.855 0 18 10 2 0 0 0 0.52659 1 31533 31533 17.113 4.8722 1 3120400 34383 2569 22992 23420 40366 40366 0.0022571551519376953 LPEAAINDVY 10 Unmodified _LPEAAINDVY_ 0 0 0 ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7823486328125 2 552.782222 1103.54989 0.44127 0.00024393 -0.21971 -0.00012145 0.22156 0.00012248 552.7821206036444 89.31 0.49225 89.31 89.032 89.524 0 73 25 4 0 0 0 0.63089 2 49400 49306;49400 10.824 1.6417 1 6837700 34384 2569 22992 23420 40367;40368 40368 0.0022571551519376953 LPEAFPITL 9 Unmodified _LPEAFPITL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7893371582031 2 500.789318 999.564084 0.12522 6.2709E-05 0.57698 0.00028895 0.7022 0.00035166 500.78941300801847 95.381 0.29617 95.013 94.816 95.112 -0.36815 23 13 3 0 0 0 0.5029 1 52051 52051 7.2892 0 1 425790 34385 8482 22993 23421 40369 40369 0.06428412734146605 LPEAGPGRTL 10 Unmodified _LPEAGPGRTL_ 0 0 0 ENSG00000148926|ENST00000278175|ADM ENSG00000148926|ENST00000278175|ADM ENSG00000148926|ENST00000278175|ADM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.78466796875 2 505.785099 1009.55564 -0.237 -0.00011987 -0.80097 -0.00040512 -1.038 -0.00052499 505.78457146048703 34.494 0.25206 34.494 34.384 34.636 0 28 12 3 0 0 0 0.17253 1 18180 18180 37.075 3.6297 1 3659200 34386 5974 22994 23422 40370 40370 0.051248588175326404 LPEAKKPRL 9 Unmodified _LPEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2258605957031 3 351.225598 1050.65496 -0.41964 -0.00014739 1.2105 0.00042517 0.79088 0.00027778 351.22595981707866 20.206 0.25319 20.206 20.057 20.31 0 31 17 2 0 0 0 0.31356 1 10137 10137 16.566 9.9355 1 778160 34387 3985 22995 23423 40371 40371 0.13166301502269562 LPEAKKPRL 9 Unmodified _LPEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2256469726562 3 351.225598 1050.65496 -0.46298 -0.00016261 0.64556 0.00022674 0.18259 6.4129E-05 351.2257087414271 20.009 0.29872 20.037 19.856 20.155 0.028355 38 15 3 0 0 0 0.21589 1 10106 10106 21.59 7.9753 1 1428100 34388 3985 22995 23423 40372 40372 0.13166301502269562 LPEAKKPRL 9 Unmodified _LPEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2260131835938 3 351.225598 1050.65496 -0.0069362 -2.4362E-06 1.8858 0.00066233 1.8788 0.0006599 351.2258701629588 20.066 0.23516 20.074 19.93 20.166 0.0078487 24 11 3 0 0 0 0.31356 1 10229 10229 16.566 5.7664 1 1095000 34389 3985 22995 23423 40373 40373 0.13166301502269562 LPEAKKPRL 9 Unmodified _LPEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5598754882812 3 351.225598 1050.65496 0.83467 0.00029316 -0.1484 -5.2123E-05 0.68627 0.00024103 351.22553343792526 23.111 0.49836 20.332 20.058 20.557 -2.7784 112 40 4 0 0 0 0.044296 2 12374 12374;12483 47.594 22.603 1 40289000 34390 3985 22995 23423 40374;40375 40374 0.13166301502269562 LPEAKKPRL 9 Unmodified _LPEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MSMS AL20221201_MKP_PDAC_01 4 526.3351440429688 2 526.334759 1050.65496 NaN NaN NaN NaN NaN NaN NaN 23.07 1 20.292 19.792 20.792 -2.7784 0 0 0 0.20097 1 12458 12458 32.786 18.88 1 34391 3985 22995 23423 40376 40376 0.13166301502269562 LPEALGLFP 9 Unmodified _LPEALGLFP_ 0 0 0 ENST00000311521.8_1_2:120124703-120124766:+|nuORF ENST00000311521.8_1_2:120124703-120124766:+|nuORF ENST00000311521.8_1_2:120124703-120124766:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.5467529296875 1 956.545145 955.537869 0.13124 0.00012554 2.113 0.0020212 2.2442 0.0021467 956.546797791613 99.772 0.15562 93.597 93.508 93.664 -6.1757 15 10 2 0 0 0 0.016184 1 66529 66529 67.344 9.8725 1 36290000 34392 11690 22996 23424 40377 40377 0.05832143562656711 LPEAQLSTVEY 11 Unmodified _LPEAQLSTVEY_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32;ENST00000523701.1_1_8:104413742-104414267:-|nuORF ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.8213500976562 2 625.319168 1248.62378 0.63516 0.00039718 -0.095632 -5.9801E-05 0.53953 0.00033738 625.3191649204064 57.241 0.28421 57.241 57.135 57.419 0 18 12 2 0 0 0 0.60536 1 31853 31853 18.373 3.1246 1 1829600 34393 7265 22997 23425 40378 40378 0.009416388868658032 LPEAVGGTVF 10 Unmodified _LPEAVGGTVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2688598632812 2 495.26875 988.522947 0.10125 5.0145E-05 1.1598 0.00057442 1.2611 0.00062456 495.2693296864674 65.137 0.47346 65.137 64.974 65.447 0 52 19 5 0 0 0 0.043729 2 36322 36322;36419 61.357 19.184 1 9675300 34394 2101 22998 23426 40379;40380 40379 0.028226516946688207 LPEAVGGTVF 10 Unmodified _LPEAVGGTVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.5302124023438 1 989.530224 988.522947 -0.079356 -7.8526E-05 0.8973 0.00088791 0.81795 0.00080938 989.5313342202644 65.191 0.33324 65.191 65.013 65.347 0 17 13 2 0 0 0 0.095098 1 36332 36332 47.749 22.349 1 1376400 34395 2101 22998 23426 40381 40381 0.028226516946688207 LPEAVGGTVF 10 Unmodified _LPEAVGGTVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 989.5300903320312 1 989.530224 988.522947 -0.049339 -4.8822E-05 3.5991 0.0035614 3.5497 0.0035126 989.5303371134627 65.719 0.21295 65.234 65.101 65.314 -0.48428 14 8 2 0 0 0 0.035736 1 35851 35851 65.235 23.395 1 2082200 34396 2101 22998 23426 40382 40382 0.028226516946688207 LPEAVGGTVF 10 Unmodified _LPEAVGGTVF_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2699890136719 2 495.26875 988.522947 1.0758 0.00053279 0.10295 5.0989E-05 1.1787 0.00058378 495.26864490776916 71.999 0.34633 65.823 65.656 66.002 -6.1757 33 18 2 0 0 0 0.035736 2 47035 47035;47173 65.235 20.71 1 84056000 34397 2101 22998 23426 40383;40384 40383 0.028226516946688207 LPEDFKAAL 9 Unmodified _LPEDFKAAL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2782897949219 2 502.276575 1002.5386 1.0723 0.0005386 0.90227 0.00045319 1.9746 0.00099179 502.2771336710476 54.31 0.31102 54.31 54.173 54.484 0 28 13 3 0 0 0 0.07087 1 30136 30136 39.95 1.9757 1 3197900 34398 8967 22999 23427 40385 40385 0.03742938211712499 LPEDFMESL 9 Unmodified _LPEDFMESL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7493896484375 2 540.749533 1079.48451 NaN NaN NaN NaN NaN NaN NaN 80.799 1 80.799 80.299 81.299 0 0 0 0 0.50124 1 44859 44859 15.847 5.0233 1 34399 3552 23000 23428 40386 40386 -0.052050220021556015 LPEDKILETF 10 Unmodified _LPEDKILETF_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.8273315429688 2 602.826629 1203.63871 0.07147 4.3084E-05 -0.86016 -0.00051853 -0.78869 -0.00047544 602.8263065042755 67.806 0.29567 67.806 67.639 67.934 0 21 13 2 0 0 0 0.06987 1 37785 37785 53.404 17.36 1 2444100 34400 2420 23001 23429 40387 40387 0.04503130754847007 LPEDLCHKF 9 Carbamidomethyl (C) _LPEDLC(Carbamidomethyl (C))HKF_ LPEDLC(1)HKF LPEDLC(50)HKF 0 1 0 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8591918945312 3 386.858586 1157.55393 1.071 0.00041432 -0.33629 -0.0001301 0.7347 0.00028423 386.8585876641947 43.274 0.45182 38.509 38.272 38.724 -4.7648 60 31 3 0 0 0 0.040733 1 26284 26284 49.527 29.901 1 65391000 34401 5023 23002 23430 40388 40388 518 -0.01854518262757665 LPEDLGENVL 10 Unmodified _LPEDLGENVL_ 0 0 0 nc|ENSG00000148204|Q5IJ48-3|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.31689453125 2 549.787504 1097.56045 0.71369 0.00039238 4.1834 0.0023 4.8971 0.0026924 549.7897303968568 101.61 0.087677 95.439 95.395 95.483 -6.1757 7 4 2 0 0 0 0.22941 1 68167 68167 9.3831 0 1 12510000 34402 5903 23003 23431 40389 40389 0.015576981696312941 LPEDQAVINRY 11 Unmodified _LPEDQAVINRY_ 0 0 0 ENST00000572003.5_1_16:72048341-72054317:+|nuORF;ENST00000573922.5_1_16:72046155-72057137:+|nuORF;ENSG00000102967|ENST00000219240|DHODH ENST00000572003.5_1_16:72048341-72054317:+|nuORF ENST00000572003.5_1_16:72048341-72054317:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8458862304688 2 659.343509 1316.67246 -0.60838 -0.00040113 1.0017 0.00066045 0.39329 0.00025932 659.343804662419 41.344 0.18129 41.344 41.241 41.422 0 13 8 2 0 0 0 0.16638 1 22303 22303 49.527 35.122 1 2917200 34403 2086 23004 23432 40390 40390 0.026795522466272814 LPEDRALYY 9 Unmodified _LPEDRALYY_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2916259765625 2 570.290214 1138.56587 0.061309 3.4964E-05 0.21963 0.00012525 0.28094 0.00016022 570.290579691292 45.264 0.30441 45.264 45.075 45.379 0 35 15 3 0 0 0 0.033587 1 24607 24607 53.404 27.136 1 22687000 34404 325 23005 23433 40391 40391 0.0021342175209611014 LPEDRALYY 9 Unmodified _LPEDRALYY_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MSMS AL20221201_MKP_PDAC_01 4 570.2908935546875 2 570.290214 1138.56587 NaN NaN NaN NaN NaN NaN NaN 51.23 1 45.581 45.081 46.081 -5.649 0 0 0 0.041018 1 32226 32226 61.602 9.9721 1 34405 325 23005 23433 40392 40392 0.0021342175209611014 LPEDRSQHL 9 Unmodified _LPEDRSQHL_ 0 0 0 nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4;ENSG00000125257|ENST00000645237|ABCC4 nc|ENSG00000125257|O15439-4|ABCC4 nc|ENSG00000125257|O15439-4|ABCC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.1821899414062 3 365.524484 1093.55162 0.81564 0.00029814 1.1271 0.00041198 1.9427 0.00071011 365.5248880676742 23.585 0.42118 20.758 20.46 20.881 -2.8273 35 25 2 0 0 0 0.18882 1 12722 12722 10.8 0 1 3296400 34406 3836 23006 23434 40393 40393 0.008587693238041538 LPEDSGTHQVL 11 Unmodified _LPEDSGTHQVL_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2962646484375 2 598.30131 1194.58807 -0.41719 -0.0002496 -2.3601 -0.0014121 -2.7773 -0.0016617 598.2995404420864 35.282 0.13417 35.282 35.246 35.38 0 12 6 2 0 0 0 0.083469 1 18656 18656 44.392 17.508 1 4235500 34407 4835 23007 23435 40394 40394 -0.0014439857013712754 LPEDSGTHQVL 11 Unmodified _LPEDSGTHQVL_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3040771484375 2 598.30131 1194.58807 -0.016384 -9.8025E-06 3.4536 0.0020663 3.4372 0.0020565 598.3035639817549 40.376 0.34056 35.846 35.757 36.097 -4.5294 31 20 2 0 0 0 0.072475 1 24205 24205 46.022 19.754 1 14168000 34408 4835 23007 23435 40395 40395 -0.0014439857013712754 LPEEEQGSGFP 11 Unmodified _LPEEEQGSGFP_ 0 0 0 ENST00000478328.1_1_7:127231492-127231768:+|nuORF ENST00000478328.1_1_7:127231492-127231768:+|nuORF ENST00000478328.1_1_7:127231492-127231768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.273681640625 2 595.272218 1188.52988 0.027091 1.6127E-05 2.8037 0.001669 2.8308 0.0016851 595.2739388388787 69.743 0.23344 69.743 69.654 69.887 0 14 10 2 0 0 0 0.5551 2 38858 38806;38858 13.615 1.4543 1 1302500 34409 14013 23008 23436 40396;40397 40397 -0.05684080215405629 LPEEEQQRVL 10 Unmodified _LPEEEQQRVL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8300170898438 2 620.830234 1239.64592 -0.19848 -0.00012322 -0.29168 -0.00018109 -0.49017 -0.00030431 620.8298330999952 35.168 0.2724 35.168 35.034 35.306 0 33 13 3 0 0 0 0.044673 1 18548 18548 61.602 30.334 1 7090300 34410 2558 23009 23437 40398 40398 0.03567863355283407 LPEEEQQRVL 10 Unmodified _LPEEEQQRVL_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MSMS AL20221201_MKP_PDAC_01 4 620.8283081054688 2 620.830234 1239.64592 NaN NaN NaN NaN NaN NaN NaN 40.226 1 35.696 35.196 36.196 -4.5294 0 0 0 0.016073 1 23998 23998 83.429 51.123 1 34411 2558 23009 23437 40399 40399 0.03567863355283407 LPEEEVINYI 10 Unmodified _LPEEEVINYI_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8170166015625 2 609.816261 1217.61797 0.23978 0.00014622 -1.0521 -0.00064157 -0.81229 -0.00049535 609.8156229640668 72.684 0.45015 72.684 72.433 72.883 0 37 20 2 0 0 0 0.63089 1 40524 40524 15.847 1.0089 1 1218600 + 34412 17769 23010 23438 40400 40400 0.017865403752011844 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.863037109375 3 387.861096 1160.56146 -0.85025 -0.00032978 1.1604 0.00045008 0.31016 0.0001203 387.86161573009275 32.957 0.29795 32.957 32.811 33.109 0 53 14 5 0 0 0 0.094149 2 17211 17211;17309 38.615 10.447 1 54873000 34413 961;7018 23011 23439 40401;40402 40401 -0.012400426707927181 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8600158691406 3 387.861096 1160.56146 -0.23467 -9.102E-05 0.537 0.00020828 0.30232 0.00011726 387.8611338309869 33.046 0.24622 32.887 32.762 33.008 -0.15918 29 9 4 0 0 0 0.15471 1 17206 17206 32.037 4.8142 1 15096000 34414 961;7018 23011 23439 40403 40403 -0.012400426707927181 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2885131835938 2 581.288005 1160.56146 -0.26115 -0.0001518 1.4291 0.00083074 1.168 0.00067893 581.288738275901 33.061 0.12614 32.902 32.81 32.936 -0.15918 6 4 2 0 0 0 0.21643 1 17248 17248 21.537 7.6309 1 1565900 34415 961;7018 23011 23439 40404 40404 -0.012400426707927181 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2881469726562 2 581.288005 1160.56146 1.2118 0.0007044 -0.33229 -0.00019316 0.8795 0.00051124 581.2875019995577 37.274 0.34563 32.991 32.81 33.156 -4.2835 37 20 2 0 0 0 0.0074135 2 21799 21799;21933 110.67 55.901 1 17336000 34416 961;7018 23011 23439 40405;40406 40405 -0.012400426707927181 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8617858886719 3 387.861096 1160.56146 1.5884 0.00061608 0.73388 0.00028464 2.3223 0.00090073 387.8613996347663 37.258 0.56392 32.974 32.65 33.213 -4.2835 96 33 4 0 0 0 0.06294 2 21803 21803;21928 38.615 19.253 1 109490000 34417 961;7018 23011 23439 40407;40408 40407 -0.012400426707927181 LPEEHARFY 9 Unmodified _LPEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 581.288005 1160.56146 -0.67623 -0.00039308 0.7836 0.0004555 0.10737 6.2415E-05 581.2882869501665 32.963 0.23689 32.963 32.831 33.068 0 0.011356 0.00017406 NaN 110.67 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4188800 34418 961;7018 23011 23439 -0.012400426707927181 LPEEIQTW 8 Unmodified _LPEEIQTW_ 0 0 0 ENSG00000140987|ENST00000396852|ZSCAN32;ENST00000304926.7_1_16:3440119-3447566:-|nuORF ENSG00000140987|ENST00000396852|ZSCAN32 ENSG00000140987|ENST00000396852|ZSCAN32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2582702636719 2 508.258382 1014.50221 NaN NaN NaN NaN NaN NaN NaN 62.173 1 62.173 61.673 62.673 0 0 0 0 0.95201 1 34671 34671 10.183 0 1 34419 5290 23012 23440 40409 40409 -0.004459386850044211 LPEELARMY 9 Oxidation (M) _LPEELARM(Oxidation (M))Y_ LPEELARM(1)Y LPEELARM(79)Y 0 0 1 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.283935546875 2 569.284074 1136.5536 -0.086142 -4.9039E-05 -0.49117 -0.00027962 -0.57732 -0.00032866 569.2838949458119 41.72 0.40225 41.72 41.519 41.921 0 85 20 6 0 0 0 0.010611 2 22557 22450;22557 78.728 40.754 1 391390000 34420 16348 23013 23441 40410;40411 40411 1814 -0.009219379826163276 LPEELARMY 9 Oxidation (M) _LPEELARM(Oxidation (M))Y_ LPEELARM(1)Y LPEELARM(46)Y 0 0 1 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2824096679688 2 569.284074 1136.5536 -0.021325 -1.214E-05 -1.0899 -0.00062047 -1.1112 -0.00063261 569.283628401908 42.02 0.32536 41.713 41.554 41.879 -0.30682 44 15 4 0 0 0 0.047788 1 22264 22264 45.7 22.963 1 77188000 34421 16348 23013 23441 40412 40412 1814 -0.009219379826163276 LPEELARMY 9 Oxidation (M) _LPEELARM(Oxidation (M))Y_ LPEELARM(1)Y LPEELARM(46)Y 0 0 1 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.28466796875 2 569.284074 1136.5536 0.86759 0.00049391 -1.4949 -0.00085104 -0.62734 -0.00035714 569.283453666816 47.093 0.57333 42.013 41.764 42.337 -5.0805 100 51 3 0 0 0 0.047788 2 29022 29022;29279 45.7 18.071 1 249670000 34422 16348 23013 23441 40413;40414 40413 1814 -0.009219379826163276 LPEELARMY 9 Unmodified _LPEELARMY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.28759765625 2 561.286617 1120.55868 0.64762 0.0003635 -0.15402 -8.6448E-05 0.4936 0.00027705 561.2867200061279 55.557 0.37258 55.079 54.841 55.213 -0.47798 65 17 5 0 0 0 0.036857 1 30083 30083 51.63 15.503 1 26436000 34423 16348 23013 23442 40415 40415 0.003223658800152407 LPEELARMY 9 Unmodified _LPEELARMY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.287841796875 2 561.286617 1120.55868 1.2713 0.00071356 -0.7241 -0.00040643 0.5472 0.00030714 561.2863949369894 61.278 0.78175 55.13 54.865 55.647 -6.1478 116 39 4 0 0 0 0.0086209 4 39344 39344;39474;39600;39725 89.401 38.671 1 621060000 34424 16348 23013 23442 40416;40417;40418;40419 40416 0.003223658800152407 LPEELARMY 9 Unmodified _LPEELARMY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.286617 1120.55868 0.44334 0.00024884 -0.62919 -0.00035315 -0.18584 -0.00010431 561.286912903882 54.932 0.3597 54.932 54.741 55.101 0 -0.12038 -0.00017441 NaN 89.401 32 15 4 NaN NaN NaN NaN 0 NaN NaN 0 8923300 34425 16348 23013 23442 0.003223658800152407 LPEELARMY 9 Unmodified _LPEELARMY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 561.286617 1120.55868 0.60999 0.00034238 0.3005 0.00016867 0.91049 0.00051104 561.2873599290357 55.136 0.21944 55.068 55.019 55.238 -0.068737 0.015462 0.00086923 NaN 89.401 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1365200 34426 16348 23013 23442 0.003223658800152407 LPEELLRNLY 10 Unmodified _LPEELLRNLY_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000008256|O43739|CYTH3;ENSG00000008256|ENST00000350796|CYTH3 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3533325195312 2 630.353345 1258.69214 0.44316 0.00027935 -0.16975 -0.000107 0.27341 0.00017235 630.3533397551818 73.644 0.18977 73.168 73.018 73.208 -0.47588 13 7 2 0 0 0 0.1899 1 40288 40288 34.932 16.559 1 1643200 34427 2595;2323;380 23014 23443 40420 40420 0.07313928257394764 LPEELLRNLY 10 Unmodified _LPEELLRNLY_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000008256|O43739|CYTH3;ENSG00000008256|ENST00000350796|CYTH3 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 630.353345 1258.69214 0.23276 0.00014672 -0.81901 -0.00051626 -0.58625 -0.00036955 630.3531830806244 73.106 0.15655 73.148 73.048 73.205 0.041733 -0.010155 -0.00037227 NaN 34.932 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1759600 34428 2595;2323;380 23014 23443 0.07313928257394764 LPEELSIH 8 Unmodified _LPEELSIH_ 0 0 0 REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2549438476562 2 469.2531 936.491647 0.32569 0.00015283 2.0838 0.00097783 2.4095 0.0011307 469.254245371979 65.247 0.25356 65.247 65.093 65.347 0 15 9 2 0 0 0 0.78849 1 36388 36388 9.3474 0 1 677010 + 34429 20393 23015 23444 40421 40421 0.0208607866057946 LPEELSIH 8 Unmodified _LPEELSIH_ 0 0 0 REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF REV__ENST00000539384.5_1_12:6560901-6571312:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.2531 936.491647 0.32569 0.00015283 2.0838 0.00097783 2.4095 0.0011307 469.254245371979 65.247 0.25356 65.247 65.093 65.347 0 0 0 NaN 9.3474 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 677010 + 34430 20393 23015 23444 0.0208607866057946 LPEENYQVL 9 Unmodified _LPEENYQVL_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7830810546875 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 56.267 1 56.267 55.767 56.767 0 0 0 0 0.17798 1 31289 31289 36.127 14.38 1 34431 8498 23016 23445 40422 40422 0.0022571551519376953 LPEENYQVL 9 Unmodified _LPEENYQVL_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.782958984375 2 552.782222 1103.54989 NaN NaN NaN NaN NaN NaN NaN 56.49 1 56.49 55.99 56.99 0 0 0 0 0.348 1 31421 31421 30.637 11.38 1 34432 8498 23016 23445 40423 40423 0.0022571551519376953 LPEEQVYLN 9 Unmodified _LPEEQVYLN_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7825317382812 2 552.782222 1103.54989 0.58275 0.00032213 -0.52968 -0.0002928 0.05307 2.9336E-05 552.7816099795391 89.928 0.36015 89.427 89.257 89.617 -0.50171 41 19 3 0 0 0 0.53557 1 49116 49116 4.756 0 1 1285400 34433 2211 23017 23446 40424 40424 0.0022571551519376953 LPEEQVYLN 9 Unmodified _LPEEQVYLN_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 552.782222 1103.54989 0.58275 0.00032213 -0.52968 -0.0002928 0.05307 2.9336E-05 552.7816099795391 89.928 0.36015 89.427 89.257 89.617 -0.50171 0.058452 -0.00024441 NaN 4.756 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1285400 34434 2211 23017 23446 0.0022571551519376953 LPEESDAPSSV 11 Unmodified _LPEESDAPSSV_ 0 0 0 REV__ENST00000371222.3_1_1:59249016-59249079:-|nuORF REV__ENST00000371222.3_1_1:59249016-59249079:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 565.7655029296875 2 565.764226 1129.5139 NaN NaN NaN NaN NaN NaN NaN 47.111 1 42.031 41.531 42.531 -5.0805 0 0 0 0.37978 1 29206 29206 29.082 0.59474 1 + 34435 26076 23018 23447 40425 40425 -0.04567786452321343 LPEEVLFGNL 10 Unmodified _LPEEVLFGNL_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2;ENST00000520536.1_1_8:22475798-22477192:+|nuORF ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MSMS AL20221201_MKP_PDAC_01 4 565.80810546875 2 565.808239 1129.60193 NaN NaN NaN NaN NaN NaN NaN 99.532 1 93.356 92.856 93.856 -6.1757 0 0 0 0.57148 1 66315 66315 32.786 6.5175 1 34436 6618 23019 23448 40426 40426 0.04230878928956372 LPEFAFSP 8 Unmodified _LPEFAFSP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2324523925781 2 454.231636 906.448719 NaN NaN NaN NaN NaN NaN NaN 75.446 1 74.969 74.469 75.469 -0.47714 0 0 0 0.53879 1 41300 41300 38.151 2.107 1 + 34437 23845 23020 23449 40427 40427 -0.008246913968491754 LPEFAKMVCH 10 Unmodified _LPEFAKMVCH_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000477741.5_1_20:57562773-57565044:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7925415039062 2 587.791012 1173.56747 0.65782 0.00038666 -0.058979 -3.4667E-05 0.59884 0.00035199 587.7913708553738 74.375 0.58801 73.899 73.714 74.302 -0.47588 49 24 3 0 0 0 0.64628 1 40770 40770 8.7454 0.58988 1 2744400 34438 1921 23021 23450 40428 40428 -0.012369837551432283 LPEFKRGKS 9 Unmodified _LPEFKRGKS_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8749389648438 3 354.541586 1060.60293 -0.27873 -9.8822E-05 0.19001 6.7366E-05 -0.088723 -3.1456E-05 354.5416616470266 31.111 0.44014 31.141 30.856 31.296 0.030106 45 18 4 0 0 0 0.55144 1 16214 16214 2.4985 0 1 17345000 + 34439 21115 23022 23451 40429 40429 0.07505138088527019 LPEFSPDPYY 10 Unmodified _LPEFSPDPYY_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2813720703125 2 614.282054 1226.54956 0.46657 0.0002866 -1.187 -0.00072915 -0.72043 -0.00044255 614.2812755593693 98.308 0.21593 98.115 97.996 98.211 -0.19321 12 7 2 0 0 0 0.69377 1 53704 53704 3.5965 1.5367 1 576870 + 34440 19749 23023 23452 40430 40430 -0.05465704204652866 LPEFSPDPYY 10 Unmodified _LPEFSPDPYY_ 0 0 0 REV__ENSG00000130827|ENST00000369682|PLXNA3 REV__ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 614.282054 1226.54956 0.46657 0.0002866 -1.187 -0.00072915 -0.72043 -0.00044255 614.2812755593693 98.308 0.21593 98.115 97.996 98.211 -0.19321 0 0 NaN 3.5965 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 576870 + 34441 19749 23023 23452 -0.05465704204652866 LPEFTKSEY 9 Unmodified _LPEFTKSEY_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2769775390625 2 557.276772 1112.53899 0.27173 0.00015143 0.45258 0.00025221 0.72431 0.00040364 557.2766980679521 43.427 0.36046 43.427 43.204 43.565 0 34 17 3 0 0 0 0.11784 1 23550 23550 31.268 13.122 1 14284000 34442 3064 23024 23453 40431 40431 -0.01277686859066307 LPEFYFCL 8 Unmodified _LPEFYFCL_ 0 0 0 ENST00000413074.1_1_1:222763317-222763545:+|nuORF ENST00000413074.1_1_1:222763317-222763545:+|nuORF ENST00000413074.1_1_1:222763317-222763545:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2493286132812 2 516.248972 1030.48339 NaN NaN NaN NaN NaN NaN NaN 103.47 1 103.43 102.93 103.93 -0.047928 0 0 0 0.97444 1 57465 57465 0.69038 0 1 34443 12993 23025 23454 40432 40432 -0.030631915803951415 LPEGILEAP 9 Unmodified _LPEGILEAP_ 0 0 0 REV__ENSG00000185313|ENST00000449082|SCN10A REV__ENSG00000185313|ENST00000449082|SCN10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7637329101562 2 469.7633 937.512048 0.4667 0.00021924 -0.37079 -0.00017419 0.095904 4.5052E-05 469.7632606393954 75.414 0.34534 75.414 75.226 75.571 0 24 14 2 0 0 0 0.32871 1 41924 41924 15.847 4.2069 1 1153000 + 34444 23493 23026 23455 40433 40433 0.0407924932038668 LPEGSLGREY 10 Unmodified _LPEGSLGREY_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7859497070312 2 560.785296 1119.55604 0.48387 0.00027135 -0.34977 -0.00019615 0.1341 7.5202E-05 560.785093066913 36.063 0.17319 36.063 35.957 36.131 0 12 8 2 0 0 0 0.30444 1 19117 19117 27.223 6.352 1 3845300 34445 7575 23027 23456 40434 40434 0.0010423374671972852 LPEGSVISL 9 Unmodified _LPEGSVISL_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000492773.5_1_3:183859720-183860594:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.5208129882812 1 914.519325 913.512048 0.20291 0.00018557 1.1368 0.0010396 1.3397 0.0012252 914.5200009388539 68.227 0.36759 68.227 68.024 68.391 0 26 17 2 0 0 0 0.16226 1 37966 37966 26.884 5.137 1 507020 34446 5671 23028 23457 40435 40435 0.05183249320384675 LPEGWSLPSY 10 Unmodified _LPEGWSLPSY_ 0 0 0 ENSG00000185803|ENST00000643944|SLC52A2;ENSG00000132517|ENST00000254853|SLC52A1;ENST00000575919.1_1_17:4936703-4937901:-|nuORF ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 MSMS AL20221201_MKP_PDAC_01 4 574.7843017578125 2 574.784764 1147.55498 NaN NaN NaN NaN NaN NaN NaN 86.335 1 80.159 79.659 80.659 -6.1757 0 0 0 0.24983 1 56917 56917 39.957 15.937 1 34447 9414 23029 23458 40436 40436 -0.012899806221867038 LPEHLDFSF 9 Unmodified _LPEHLDFSF_ 0 0 0 REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175 REV__nc|ENSG00000127419|Q9BSA9-2|TMEM175 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.8013916015625 2 552.771657 1103.52876 1.1011 0.00060867 -1.2518 -0.00069196 -0.15066 -8.3283E-05 552.7729703810586 79.152 0.50552 72.976 72.611 73.117 -6.1757 46 27 3 0 0 0 0.19613 1 51717 51717 7.9102 0 1 8623300 + 34448 19580 23030 23459 40437 40437 -0.01886249793665229 LPEHNYVVL 9 Unmodified _LPEHNYVVL_ 0 0 0 nc|ENSG00000241484|P85298|ARHGAP8;ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.2669067382812 2 542.295299 1082.57605 0.83645 0.0004536 -0.48025 -0.00026044 0.3562 0.00019317 542.2949976249904 57.696 0.18249 51.668 51.535 51.717 -6.0275 15 9 2 0 0 0 0.091436 1 36860 36860 27.629 0 1 24883000 34449 16570 23031 23460 40438 40438 0.038060294773458736 LPEIDNALVVF 11 Unmodified _LPEIDNALVVF_ 0 0 0 ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR ENSG00000127948|ENST00000461988|POR MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.3443603515625 2 615.342446 1228.67034 1.1578 0.00071246 1.0116 0.00062247 2.1694 0.0013349 615.3432411089159 100.78 0.1366 94.6 94.515 94.651 -6.1757 18 9 3 0 0 0 0.091371 1 67484 67484 61.602 41.148 1 24957000 34450 4035 23032 23461 40439 40439 0.0651512350880239 LPEIVVLIKH 10 Unmodified _LPEIVVLIKH_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1160.40185546875 1 1160.74016 1159.73288 -1.0331 -0.0011992 1.8041 0.0020941 0.77099 0.00089492 1160.7405861377024 34.993 0.11372 34.993 34.958 35.072 0 6 5 2 0 0 0 0.24008 1 18502 18502 0.40072 0 1 2313800 + 34451 18989 23033 23462 40440 40440 0.15940314367662722 LPEKGVAAL 9 Unmodified _LPEKGVAAL_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2748107910156 2 449.273835 896.533118 0.45166 0.00020292 -0.15571 -6.9955E-05 0.29595 0.00013296 449.2735447576389 38.143 0.27849 38.143 37.925 38.204 0 27 13 3 0 0 0 0.047714 1 20294 20294 45.74 5.7826 1 5426000 34452 2662 23034 23463 40441 40441 0.08071259419898524 LPEKGVAAL 9 Unmodified _LPEKGVAAL_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MSMS AL20221201_MKP_PDAC_01 4 449.2734680175781 2 449.273835 896.533118 NaN NaN NaN NaN NaN NaN NaN 43.097 1 38.332 37.832 38.832 -4.7648 0 0 0 0.076083 1 26128 26128 49.554 3.5333 1 34453 2662 23034 23463 40442 40442 0.08071259419898524 LPEKIHGR 8 Unmodified _LPEKIHGR_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2831420898438 2 475.282526 948.550499 0.19462 9.2498E-05 0.33021 0.00015694 0.52483 0.00024944 475.28262021575557 24.104 0.18842 24.103 24.017 24.206 -0.0016766 14 9 2 0 0 0 0.63229 1 12307 12307 23.148 0 1 3892500 + 34454 22249 23035 23464 40443 40443 0.07416599745567964 LPEKIHGR 8 Unmodified _LPEKIHGR_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2818298339844 2 475.282526 948.550499 0.46532 0.00022116 -0.39145 -0.00018605 0.073874 3.5111E-05 475.2821694010194 27.469 0.33544 24.432 24.28 24.615 -3.0365 35 16 3 0 0 0 0.70294 1 15314 15314 16.942 0 1 36118000 + 34455 22249 23035 23464 40444 40444 0.07416599745567964 LPEKIHGR 8 Unmodified _LPEKIHGR_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 475.282526 948.550499 0.19462 9.2498E-05 0.33021 0.00015694 0.52483 0.00024944 475.28262021575557 24.104 0.18842 24.103 24.017 24.206 -0.0016766 0.085549 -0.0005302 NaN 23.148 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3892500 + 34456 22249 23035 23464 0.07416599745567964 LPEKLHHD 8 Unmodified _LPEKLHHD_ 0 0 0 ENSG00000134152|ENST00000256544|KATNBL1;ENST00000560671.5_1_15:34440831-34455877:-|nuORF;ENST00000540594.5_1_15:34439399-34502250:-|nuORF ENSG00000134152|ENST00000256544|KATNBL1 ENSG00000134152|ENST00000256544|KATNBL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2626647949219 2 494.764166 987.513779 0.74054 0.00036639 -3.2768 -0.0016212 -2.5363 -0.0012548 494.7626034622249 46.605 0.19813 46.268 46.149 46.347 -0.33664 16 9 2 0 0 0 8.7369 1 24919 24919 9.3474 6.77 1 3965300 34457 4562 23036 23465 40445 40445 0.019523031289850223 LPEKRPKE 8 Unmodified _LPEKRPKE_ 0 0 0 ENSG00000186143|ENST00000335524|PRR30 ENSG00000186143|ENST00000335524|PRR30 ENSG00000186143|ENST00000335524|PRR30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2852783203125 2 498.795466 995.57638 0.30447 0.00015187 -0.34165 -0.00017042 -0.037184 -1.8547E-05 498.7960892185572 39.768 0.15287 39.768 39.7 39.853 0 14 7 3 0 0 0 8.7369 1 21321 21321 7.9102 2.1497 1 2532500 34458 9457 23037 23466 40446 40446 0.07841449197189831 LPELGTPLL 9 Unmodified _LPELGTPLL_ 0 0 0 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.5728759765625 1 952.57136 951.564084 0.13289 0.00012658 2.5695 0.0024477 2.7024 0.0025742 952.5732898438783 73.627 0.28278 73.627 73.503 73.786 0 14 11 2 0 0 0 0.2001 1 40991 40991 23.148 5.0134 1 374010 + 34459 18923 23038 23467 40447 40447 0.08636412734142596 LPELINSR 8 Unmodified _LPELINSR_ 0 0 0 REV__ENSG00000057468|ENST00000263187|MSH4 REV__ENSG00000057468|ENST00000263187|MSH4 MSMS AL20221201_MKP_PDAC_01 4 471.2747802734375 2 471.274367 940.53418 NaN NaN NaN NaN NaN NaN NaN 102.6 1 96.426 95.926 96.926 -6.1757 0 0 0 0.92452 1 68847 68847 15.847 3.3156 1 + 34460 17303 23039 23468 40448 40448 0.0615347378881097 LPELKEKESFI 11 Unmodified _LPELKEKESFI_ 0 0 0 ENSG00000135698|ENST00000258169|MPHOSPH6 ENSG00000135698|ENST00000258169|MPHOSPH6 ENSG00000135698|ENST00000258169|MPHOSPH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.875244140625 2 666.874111 1331.73367 0.33965 0.0002265 -0.3771 -0.00025148 -0.037458 -2.498E-05 666.8734056600011 98.635 0.16881 92.46 92.352 92.52 -6.1757 19 12 2 0 0 0 0.31498 1 65443 65443 32.786 8.1118 1 31006000 34461 4733 23040 23469 40449 40449 0.0810706422603289 LPELNPPVL 9 Unmodified _LPELNPPVL_ 0 0 0 ENSG00000198746|ENST00000361720|GPATCH3 ENSG00000198746|ENST00000361720|GPATCH3 ENSG00000198746|ENST00000361720|GPATCH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2949523925781 2 496.294768 990.574983 0.92676 0.00045995 0.57102 0.00028339 1.4978 0.00074334 496.29507138557614 80.477 0.37191 79.984 79.804 80.176 -0.49248 32 14 3 0 0 0 0.34999 2 44048 44048;44146 14.838 0.93222 1 766880 34462 10140 23041 23470 40450;40451 40450 0.07931815108440787 LPELNPPVL 9 Unmodified _LPELNPPVL_ 0 0 0 ENSG00000198746|ENST00000361720|GPATCH3 ENSG00000198746|ENST00000361720|GPATCH3 ENSG00000198746|ENST00000361720|GPATCH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2948913574219 2 496.294768 990.574983 1.3668 0.00067836 -0.11557 -5.7357E-05 1.2513 0.000621 496.2946324740449 88.011 0.47661 81.836 81.602 82.079 -6.1757 39 26 2 0 0 0 0.024882 1 57972 57972 58.679 28.454 1 10299000 34463 10140 23041 23470 40452 40452 0.07931815108440787 LPELNTRAF 9 Unmodified _LPELNTRAF_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7930908203125 2 530.792924 1059.57129 0.38186 0.00020269 0.07129 3.784E-05 0.45315 0.00024053 530.7928027188816 55.557 0.35398 55.079 54.905 55.259 -0.47798 51 16 4 0 0 0 0.023481 2 30096 30096;30201 60.074 27.288 1 12881000 34464 7274 23042 23471 40453;40454 40453 0.04389145334562272 LPELNTRAF 9 Unmodified _LPELNTRAF_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7933959960938 2 530.792924 1059.57129 0.13184 6.9981E-05 0.32862 0.00017443 0.46046 0.00024441 530.7930431577844 55.257 0.20147 55.188 55.057 55.258 -0.068737 16 9 2 0 0 0 0.21643 1 30045 30045 21.537 6.6987 1 1357700 34465 7274 23042 23471 40455 40455 0.04389145334562272 LPELNTRAF 9 Unmodified _LPELNTRAF_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7930908203125 2 530.792924 1059.57129 1.0625 0.00056394 -1.1161 -0.0005924 -0.053604 -2.8453E-05 530.7920998680248 61.33 0.37724 55.182 55.055 55.432 -6.1478 37 18 3 0 0 0 0.0086904 2 39466 39466;39592 107.19 48.508 1 44611000 34466 7274 23042 23471 40456;40457 40456 0.04389145334562272 LPELQIKF 8 Unmodified _LPELQIKF_ 0 0 0 REV__ENST00000541010.5_1_9:34990621-34990810:+|nuORF REV__ENST00000541010.5_1_9:34990621-34990810:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7718200683594 2 494.29731 986.580068 0.67893 0.00033559 -0.11621 -5.7443E-05 0.56272 0.00027815 494.2971979152788 84.828 0.3712 84.329 84.114 84.485 -0.49961 38 15 3 0 0 0 8.7369 1 46307 46307 6.3541 0 1 2429300 + 34467 20212 23043 23472 40458 40458 0.08624118971033568 LPELQQFQH 9 Unmodified _LPELQQFQH_ 0 0 0 ENSG00000197497|ENST00000396424|ZNF665 ENSG00000197497|ENST00000396424|ZNF665 ENSG00000197497|ENST00000396424|ZNF665 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5321044921875 3 380.532979 1138.57711 NaN NaN NaN NaN NaN NaN NaN 15.117 1 15.117 14.617 15.617 0 0 0 0 0.84369 1 7254 7254 1.1933 0.41681 1 34468 9961 23044 23473 40459 40459 0.013362438462309001 LPELQTHVL 9 Unmodified _LPELQTHVL_ 0 0 0 REV__ENSG00000198700|ENST00000361565|IPO9 REV__ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.302734375 2 525.303124 1048.5917 -0.068833 -3.6158E-05 -0.44458 -0.00023354 -0.51342 -0.0002697 525.3029144128535 38.041 0.36963 37.769 37.599 37.969 -0.27133 38 17 3 0 0 0 0.08691 1 20007 20007 36.127 3.3413 1 4556400 + 34469 24041 23045 23474 40460 40460 0.06934315994362805 LPELQTHVL 9 Unmodified _LPELQTHVL_ 0 0 0 REV__ENSG00000198700|ENST00000361565|IPO9 REV__ENSG00000198700|ENST00000361565|IPO9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 525.303124 1048.5917 -0.068833 -3.6158E-05 -0.44458 -0.00023354 -0.51342 -0.0002697 525.3029144128535 38.041 0.36963 37.769 37.599 37.969 -0.27133 0.057777 -0.00057429 NaN 36.127 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4556400 + 34470 24041 23045 23474 0.06934315994362805 LPEMRRRWRRR 11 Unmodified _LPEMRRRWRRR_ 0 0 0 REV__nc|ENSG00000135636|O75923-15|DYSF REV__nc|ENSG00000135636|O75923-15|DYSF MSMS AL20221201_MKP_PDAC_01 4 806.4688110351562 2 806.465501 1610.91645 NaN NaN NaN NaN NaN NaN NaN 101.66 1 95.482 94.982 95.982 -6.1757 0 0 0 0.94144 1 68227 68227 1.4819 0.15237 1 + 34471 20084 23046 23475 40461 40461 0.13542777650195603 LPEMVGHPAFA 11 Unmodified _LPEMVGHPAFA_ 0 0 0 nc|ENSG00000131697|O75161-2|NPHP4;ENST00000378169.7_1_1:5965468-6021937:-|nuORF;ENST00000478423.6_1_1:5965468-6029316:-|nuORF;ENSG00000131697|ENST00000378156|NPHP4 nc|ENSG00000131697|O75161-2|NPHP4 nc|ENSG00000131697|O75161-2|NPHP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7940673828125 2 584.794609 1167.57467 0.70085 0.00040985 0.50152 0.00029328 1.2024 0.00070314 584.7948222495465 63.176 0.33063 63.154 63.029 63.359 -0.021614 36 16 3 0 0 0 0.46578 1 34551 34551 18.146 0 1 5569800 34472 16190 23047 23476 40462 40462 -0.002419278830757321 LPENEPGS 8 Unmodified _LPENEPGS_ 0 0 0 nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH;ENST00000442741.1_1_13:42830025-42830667:+|nuORF nc|ENSG00000091483|P07954-2|FH nc|ENSG00000091483|P07954-2|FH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.6986694335938 2 421.698158 841.381762 -0.3849 -0.00016231 0.12814 5.4037E-05 -0.25676 -0.00010828 421.69830413636663 48.398 0.32418 48.398 48.231 48.555 0 27 15 2 0 0 0 0.46494 1 26523 26523 38.151 0 1 4044100 34473 1586 23048 23477 40463 40463 -0.045273466786056815 LPENEPGS 8 Unmodified _LPENEPGS_ 0 0 0 nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH;ENST00000442741.1_1_13:42830025-42830667:+|nuORF nc|ENSG00000091483|P07954-2|FH nc|ENSG00000091483|P07954-2|FH MSMS AL20221201_MKP_PDAC_01 4 421.6985473632812 2 421.698158 841.381762 NaN NaN NaN NaN NaN NaN NaN 56.407 1 50.43 49.93 50.93 -5.9769 0 0 0 0.53879 1 35987 35987 38.151 0 1 34474 1586 23048 23477 40464 40464 -0.045273466786056815 LPENEVPEVP 10 Unmodified _LPENEVPEVP_ 0 0 0 nc|ENSG00000172717|Q8N9W8|GARIN2;ENSG00000172717|ENST00000696955|GARIN2;nc|ENSG00000172717|Q8N9W8-2|GARIN2 nc|ENSG00000172717|Q8N9W8|GARIN2 nc|ENSG00000172717|Q8N9W8|GARIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7882690429688 2 561.787504 1121.56045 0.71822 0.00040349 0.84039 0.00047212 1.5586 0.00087561 561.7885444278666 60.547 0.24249 60.547 60.427 60.67 0 20 10 3 0 0 0 0.44171 1 33787 33787 19.362 1.2156 1 2016400 34475 8244 23049 23478 40465 40465 0.0045369816962193 LPENIGNLY 9 Unmodified _LPENIGNLY_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7713012695312 2 516.771657 1031.52876 0.19176 9.9097E-05 -0.11695 -6.0438E-05 0.07481 3.8659E-05 516.7715264812324 62.039 0.40876 62.039 61.821 62.23 0 44 18 3 0 0 0 0.0090524 1 34652 34652 85.642 23.069 1 12757000 34476 4921 23050 23479 40466 40466 0.014257502063401262 LPENIGNLY 9 Unmodified _LPENIGNLY_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.771240234375 2 516.771657 1031.52876 0.53983 0.00027897 -0.41084 -0.00021231 0.12899 6.6658E-05 516.7713265608342 62.615 0.32513 62.128 61.936 62.261 -0.48764 38 15 3 0 0 0 0.013041 2 34086 34086;34197 71.922 18.089 1 7799300 34477 4921 23050 23479 40467;40468 40467 0.014257502063401262 LPENIGNLY 9 Unmodified _LPENIGNLY_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7723999023438 2 516.771657 1031.52876 0.7009 0.0003622 -0.011405 -5.8937E-06 0.68949 0.00035631 516.7716731253121 69.645 0.43757 63.47 63.193 63.631 -6.1757 58 23 3 0 0 0 0.0082353 2 45532 45413;45532 96.111 24.189 1 63223000 34478 4921 23050 23479 40469;40470 40470 0.014257502063401262 LPENIQFDVY 10 Unmodified _LPENIQFDVY_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.30859375 2 619.308603 1236.60265 NaN NaN NaN NaN NaN NaN NaN 75.64 1 75.163 74.663 75.663 -0.47714 0 0 0 0.93054 1 41407 41407 10.8 5.0677 1 34479 852 23051 23480 40471 40471 -0.006183264219998819 LPENIQFDVY 10 Unmodified _LPENIQFDVY_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2;ENST00000590244.1_1_17:58543761-58603427:-|nuORF ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3090209960938 2 619.308603 1236.60265 0.63324 0.00039217 1.0197 0.00063153 1.653 0.0010237 619.3086615468733 83.047 0.43761 76.871 76.608 77.045 -6.1757 51 23 4 0 0 0 0.044673 1 54516 54516 79.596 45.195 1 22297000 34480 852 23051 23480 40472 40472 -0.006183264219998819 LPENLNESKM 10 Unmodified _LPENLNESKM_ 0 0 0 REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF REV__ENST00000299954.13_1_17:65688699-65688948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7922973632812 2 587.792263 1173.56997 0.43451 0.0002554 -0.1439 -8.4581E-05 0.29061 0.00017082 587.7919596413135 73.917 0.28043 73.917 73.713 73.994 0 18 11 2 0 0 0 0.66229 1 41128 41128 7.1017 1.8048 1 433330 + 34481 25298 23052 23481 40473 40473 -0.00986856816530235 LPENQVLPHY 10 Unmodified _LPENQVLPHY_ 0 0 0 LAMA5-CABLES2|1|fusion;LAMA5-CABLES2|2|fusion;ENSG00000149679|ENST00000279101|CABLES2 LAMA5-CABLES2|1|fusion LAMA5-CABLES2|1|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2603149414062 2 605.316763 1208.61897 0.23691 0.00014341 1.5029 0.00090971 1.7398 0.0010531 605.3178247062701 47.479 0.17342 47.479 47.427 47.601 0 15 7 3 0 0 0 0.21977 1 25983 25983 17.113 8.9574 1 855940 34482 15975 23053 23482 40474 40474 0.023007995347825272 LPENSIVNY 9 Unmodified _LPENSIVNY_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.282958984375 2 524.769114 1047.52368 1.0539 0.00055303 1.7614 0.00092432 2.8153 0.0014774 524.7690138915192 51.292 0.39014 51.292 51.15 51.54 0 42 17 4 0 0 0 0.094149 1 28295 28295 34.402 5.3201 1 10189000 34483 2541 23054 23483 40475 40475 0.001814463437312952 LPENTFIVGY 10 Unmodified _LPENTFIVGY_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000497281.5_1_X:153763381-153774262:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.8009643554688 2 576.800414 1151.58628 0.67822 0.0003912 1.0477 0.00060429 1.7259 0.00099549 576.8010246569235 73.888 0.48332 73.888 73.638 74.121 0 50 20 3 0 0 0 0.07026 2 41167 41071;41167 71.922 47.902 1 5278500 34484 6702 23055 23484 40476;40477 40477 0.016545924119100164 LPENTFIVGY 10 Unmodified _LPENTFIVGY_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000497281.5_1_X:153763381-153774262:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8007202148438 2 576.800414 1151.58628 0.80999 0.0004672 1.7063 0.00098422 2.5163 0.0014514 576.8019944311158 74.386 0.98201 73.91 73.299 74.281 -0.47588 139 43 5 0 0 0 0.14294 2 40721 40721;40818 56.177 31.503 1 38832000 34485 6702 23055 23484 40478;40479 40478 0.016545924119100164 LPENTFIVGY 10 Unmodified _LPENTFIVGY_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000497281.5_1_X:153763381-153774262:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8012084960938 2 576.800414 1151.58628 0.53041 0.00030594 0.20716 0.00011949 0.73757 0.00042543 576.8005117349486 73.853 0.50483 73.897 73.612 74.116 0.043983 70 23 4 0 0 0 0.18439 1 40754 40754 49.933 20.851 1 10899000 34486 6702 23055 23484 40480 40480 0.016545924119100164 LPENTFIVGY 10 Unmodified _LPENTFIVGY_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000497281.5_1_X:153763381-153774262:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.800537109375 2 576.800414 1151.58628 0.7898 0.00045556 -1.1554 -0.00066645 -0.36562 -0.00021089 576.8002622017086 81.911 0.69234 75.735 75.413 76.106 -6.1757 118 38 4 0 0 0 0.14294 3 53754 53631;53754;53885 56.177 28.548 1 205580000 34487 6702 23055 23484 40481;40482;40483 40482 0.016545924119100164 LPENTFIVGY 10 Unmodified _LPENTFIVGY_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000497281.5_1_X:153763381-153774262:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20221201_MKP_PDAC_01 4 1152.590576171875 1 1152.59355 1151.58628 0.65065 0.00074993 -0.53794 -0.00062003 0.11271 0.0001299 1152.592693407015 81.888 0.45657 75.712 75.514 75.97 -6.1757 45 25 2 0 0 0 0.002045 1 53902 53902 137.42 85.155 1 20795000 34488 6702 23055 23484 40484 40484 0.016545924119100164 LPENVKFYY 9 Unmodified _LPENVKFYY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.8013916015625 2 586.802957 1171.59136 -0.42802 -0.00025116 -2.1438 -0.001258 -2.5719 -0.0015092 586.8027001333307 56.704 0.36943 56.219 56.061 56.43 -0.48554 49 20 3 0 0 0 0.021948 2 30761 30761;30863 61.602 21.652 1 18634000 34489 10191 23056 23485 40485;40486 40485 0.012428962745161698 LPENVKFYY 9 Unmodified _LPENVKFYY_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8029174804688 2 586.802957 1171.59136 1.1681 0.00068544 -0.053097 -3.1157E-05 1.115 0.00065428 586.8031858578088 62.355 0.73045 56.179 55.905 56.636 -6.1757 108 39 3 0 0 0 0.0081887 3 40100 40100;40234;40359 93.166 44.632 1 94835000 34490 10191 23056 23485 40487;40488;40489 40487 0.012428962745161698 LPENYQMKY 9 Unmodified _LPENYQMKY_ 0 0 0 ENSG00000156269|ENST00000286794|NAA11;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000488481.1_1_X:153199817-153200402:-|nuORF;ENST00000478177.1_1_X:153199394-153200402:-|nuORF ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2850952148438 2 593.284074 1184.5536 0.19171 0.00011374 1.3425 0.00079647 1.5342 0.00091021 593.284970047607 45.129 0.31733 40.277 40.069 40.387 -4.852 36 20 3 0 0 0 0.0093238 1 27604 27604 100.09 70.25 1 13625000 34491 6444 23057 23486 40490 40490 -0.03129937982589581 LPEPGHSHRF 10 Unmodified _LPEPGHSHRF_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.86865234375 3 392.868473 1175.58359 0.76389 0.00030011 0.36479 0.00014332 1.1287 0.00044342 392.8686439072597 22.51 0.35012 19.732 19.537 19.887 -2.7784 32 19 2 0 0 0 0.28276 1 12055 12055 24.957 14.642 1 6704100 34492 3425 23058 23487 40491 40491 0.0028218179759278428 LPEPGLGLAY 10 Unmodified _LPEPGLGLAY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1029.723266601562 1 1029.56152 1028.55425 -0.45419 -0.00046762 1.3461 0.0013858 0.89186 0.00091823 1030.565614735543 72.006 0.21126 72.006 71.883 72.095 0 12 9 2 0 0 0 0.56348 1 40089 40089 13.042 6.8367 1 456950 34493 2723 23059 23488 40492 40492 0.04111224728740126 LPEPGLGLAY 10 Unmodified _LPEPGLGLAY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2846069335938 2 515.2844 1028.55425 0.54554 0.00028111 -0.029448 -1.5174E-05 0.51609 0.00026593 515.2843437947743 72.449 0.39469 71.973 71.772 72.167 -0.47609 32 18 2 0 0 0 0.24625 1 39626 39626 30.637 8.8899 1 3671400 34494 2723 23059 23488 40493 40493 0.04111224728740126 LPEPGLGLAY 10 Unmodified _LPEPGLGLAY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1029.558349609375 1 1029.56152 1028.55425 0.61315 0.00063128 3.2383 0.003334 3.8514 0.0039653 1029.5617059278345 80.347 0.30265 74.171 73.975 74.278 -6.1757 26 17 2 0 0 0 0.041224 1 52588 52588 62.573 14.227 1 10773000 34495 2723 23059 23488 40494 40494 0.04111224728740126 LPEPGLGLAY 10 Unmodified _LPEPGLGLAY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.284912109375 2 515.2844 1028.55425 0.7842 0.00040409 -0.73396 -0.0003782 0.050246 2.5891E-05 515.2840579222666 80.34 0.43768 74.165 73.858 74.296 -6.1757 46 25 2 0 0 0 0.18021 1 52638 52638 36.127 10.728 1 25170000 34496 2723 23059 23488 40495 40495 0.04111224728740126 LPEPGLGLAY 10 Unmodified _LPEPGLGLAY_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.2844 1028.55425 0.12599 6.4922E-05 0.65465 0.00033733 0.78065 0.00040226 515.2842210532262 72.004 0.35928 72.004 71.819 72.178 0 0.01522 0.00053551 NaN 30.637 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1266100 34497 2723 23059 23488 0.04111224728740126 LPEPKVRIVEY 11 Unmodified _LPEPKVRIVEY_ 0 0 0 nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 nc|ENSG00000100425|O95696|BRD1 nc|ENSG00000100425|O95696|BRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2623596191406 3 448.262489 1341.76564 0.45669 0.00020472 -0.42955 -0.00019255 0.027135 1.2164E-05 448.2624111625457 48.098 0.32956 47.746 47.575 47.905 -0.3526 34 16 3 0 0 0 0.18957 2 25762 25762;25873 32.616 11.745 1 6434400 34498 1824 23060 23489 40496;40497 40496 0.10842476699826875 LPEPKVRIVEY 11 Unmodified _LPEPKVRIVEY_ 0 0 0 nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 nc|ENSG00000100425|O95696|BRD1 nc|ENSG00000100425|O95696|BRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.261962890625 3 448.262489 1341.76564 1.3726 0.0006153 -0.41815 -0.00018744 0.95448 0.00042786 448.2621491221271 53.81 0.41973 48.006 47.831 48.251 -5.8042 53 25 3 0 0 0 0.36533 1 33978 33978 23.34 13.323 1 22202000 34499 1824 23060 23489 40498 40498 0.10842476699826875 LPEPTELSES 10 Unmodified _LPEPTELSES_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777 REV__ENSG00000196453|ENST00000247930|ZNF777 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1829833984375 3 367.848521 1100.52373 -0.36583 -0.00013457 1.0071 0.00037047 0.64129 0.0002359 367.8490470610053 21.999 0.24245 21.999 21.901 22.143 0 29 21 2 0 0 0 0.71123 1 11167 11167 0.69767 0.34703 1 1220700 + 34500 23830 23061 23490 40499 40499 -0.022505984469717077 LPEPVHGVAF 10 Unmodified _LPEPVHGVAF_ 0 0 0 ENST00000547407.5_1_16:711076-715728:+|nuORF;ENST00000552728.5_1_16:708591-715679:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF;ENST00000552683.5_1_16:707859-713132:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF;ENSG00000161996|ENST00000293879|WDR90 ENST00000547407.5_1_16:711076-715728:+|nuORF ENST00000547407.5_1_16:711076-715728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2861328125 2 533.290017 1064.56548 0.026529 1.4148E-05 -4.0709 -0.002171 -4.0444 -0.0021568 533.2865004167522 56.926 0.44681 56.44 56.247 56.694 -0.48554 28 20 2 0 0 0 0.037795 1 30926 30926 64.236 35.749 1 4281300 34501 6825 23062 23491 40500 40500 0.03578046822894976 LPEQHDCTF 9 Carbamidomethyl (C) _LPEQHDC(Carbamidomethyl (C))TF_ LPEQHDC(1)TF LPEQHDC(120)TF 0 1 0 ENST00000463847.1_1_6:38110907-38120162:+|nuORF;ENSG00000156639|ENST00000287218|ZFAND3 ENST00000463847.1_1_6:38110907-38120162:+|nuORF ENST00000463847.1_1_6:38110907-38120162:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.74755859375 2 573.747856 1145.48116 1.0485 0.00060159 -1.1161 -0.00064038 -0.067613 -3.8793E-05 573.7471772433968 34.996 0.45491 30.901 30.65 31.105 -4.0951 60 26 3 0 0 0 0.0039711 2 20268 20140;20268 121.53 93.905 1 24538000 34502 6470 23063 23492 40501;40502 40502 639 -0.08576272056188827 LPEQLIKEAF 10 Unmodified _LPEQLIKEAF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.33740234375 2 594.337164 1186.65977 NaN NaN NaN NaN NaN NaN NaN 67.308 1 66.825 66.325 67.325 -0.48218 0 0 0 0.80141 1 36769 36769 12.241 4.6317 1 34503 6396 23064 23493 40503 40503 0.07391140854383593 LPEQSPVSY 9 Unmodified _LPEQSPVSY_ 0 0 0 nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 nc|ENSG00000170242|Q96K76-2|USP47 nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2557983398438 2 510.25584 1018.49713 0.61941 0.00031606 1.3851 0.00070677 2.0045 0.0010228 510.2556115822446 42.375 0.40641 42.375 42.179 42.586 0 44 19 4 0 0 0 0.044011 2 22989 22878;22989 47.749 15.443 1 12100000 34504 7962 23065 23494 40504;40505 40505 -0.0113824254760857 LPEQVQVSY 9 Unmodified _LPEQVQVSY_ 0 0 0 ENSG00000172262|ENST00000682664|ZNF131;nc|ENSG00000172262|P52739-2|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.77587890625 2 531.776939 1061.53933 0.24553 0.00013057 0.53478 0.00028438 0.78031 0.00041495 531.7774519249102 49.013 0.30419 49.013 48.91 49.215 0 24 14 2 0 0 0 0.10247 1 26938 26938 32.786 12.371 1 7827100 34505 8196 23066 23495 40506 40506 0.011017328607749732 LPEQVRYV 8 Unmodified _LPEQVRYV_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7535705566406 2 502.282192 1002.54983 0.3321 0.00016681 -2.4501 -0.0012306 -2.118 -0.0010638 502.2810072618314 43.381 0.17579 43.381 43.262 43.438 0 13 8 2 0 0 0 8.7369 1 23490 23490 19.439 1.304 1 2645000 + 34506 21892 23067 23496 40507 40507 0.048657603058586574 LPERLHMCL 9 Unmodified _LPERLHMCL_ 0 0 0 nc|ENSG00000168904|Q86X40-2|LRRC28;ENSG00000168904|ENST00000301981|LRRC28;ENST00000559774.6_1_15:99874138-99895656:+|nuORF;ENST00000558248.5_1_15:99860885-99892677:+|nuORF;ENST00000558890.5_1_15:99872165-99903471:+|nuORF;nc|ENSG00000168904|Q86X40-3|LRRC28 nc|ENSG00000168904|Q86X40-2|LRRC28 nc|ENSG00000168904|Q86X40-2|LRRC28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.29248046875 2 556.291179 1110.56781 0.70458 0.00039195 -0.13316 -7.4075E-05 0.57143 0.00031788 556.2910240475408 67.9 0.83775 61.725 61.305 62.143 -6.1757 109 48 3 0 0 0 0.052168 1 44435 44435 44.407 16.778 1 103280000 34507 7812 23068 23497 40508 40508 0.016944359646913654 LPERSWDITY 10 Unmodified _LPERSWDITY_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MSMS AL20221201_MKP_PDAC_01 4 640.3211059570312 2 640.319502 1278.62445 NaN NaN NaN NaN NaN NaN NaN 44.569 1 39.717 39.217 40.217 -4.852 0 0 0 0.015446 1 27227 27227 72.968 0 1 + 34508 22227 23069 23498 40509 40509 -0.0037152167342355824 LPERYDSFLLH 11 Unmodified _LPERYDSFLLH_ 0 0 0 REV__nc|ENSG00000167861|Q8IV36-3|HID1 REV__nc|ENSG00000167861|Q8IV36-3|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.3607177734375 2 695.361702 1388.70885 -0.3119 -0.00021688 -0.29783 -0.0002071 -0.60973 -0.00042398 695.3611578186718 56.742 0.31709 56.257 56.136 56.453 -0.48554 28 15 2 0 0 0 0.67037 1 30824 30824 8.7454 4.4162 1 2613700 + 34509 22257 23070 23499 40510 40510 0.03004429143334164 LPESAPLIY 9 Unmodified _LPESAPLIY_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;ENST00000399325.2_1_X:133406364-133406679:+|nuORF ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7793579101562 2 501.778951 1001.54335 0.61692 0.00030956 0.31487 0.00015799 0.93179 0.00046755 501.779022082332 66.959 0.43143 66.959 66.701 67.132 0 40 19 3 0 0 0 0.023164 2 37385 37278;37385 60.39 24.345 1 3511700 34510 8753 23071 23500 40511;40512 40512 0.04263822354471358 LPESAPLIY 9 Unmodified _LPESAPLIY_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;ENST00000399325.2_1_X:133406364-133406679:+|nuORF ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7793579101562 2 501.778951 1001.54335 0.17695 8.8788E-05 0.81453 0.00040871 0.99147 0.0004975 501.7793094741333 67.47 0.33994 66.988 66.802 67.142 -0.48218 25 14 2 0 0 0 0.052168 1 36831 36831 44.407 8.3628 1 1870600 34511 8753 23071 23500 40513 40513 0.04263822354471358 LPESAPLIY 9 Unmodified _LPESAPLIY_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;ENST00000399325.2_1_X:133406364-133406679:+|nuORF ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7778930664062 2 501.778951 1001.54335 0.96887 0.00048616 -1.0563 -0.00053003 -0.087427 -4.3869E-05 501.77810574739334 73.844 0.31493 67.668 67.53 67.845 -6.1757 19 15 2 0 0 0 0.06187 1 48283 48283 42.095 11.87 1 10697000 34512 8753 23071 23500 40514 40514 0.04263822354471358 LPESLYPHTY 10 Unmodified _LPESLYPHTY_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3035278320312 2 610.303321 1218.59209 0.85202 0.00051999 0.27253 0.00016632 1.1245 0.00068631 610.3032668872155 49.825 0.17682 49.433 49.313 49.49 -0.3923 15 8 2 0 0 0 0.10406 1 26834 26834 54.774 32.037 1 2337400 34513 7064 23072 23501 40515 40515 -0.00846309076405305 LPESLYPHTY 10 Unmodified _LPESLYPHTY_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MSMS AL20221201_MKP_PDAC_01 4 610.3038330078125 2 610.303321 1218.59209 NaN NaN NaN NaN NaN NaN NaN 55.71 1 49.789 49.289 50.289 -5.9211 0 0 0 4.982E-06 1 35492 35492 139.14 95.28 1 34514 7064 23072 23501 40516 40516 -0.00846309076405305 LPESNTLHKKF 11 Unmodified _LPESNTLHKKF_ 0 0 0 REV__ENSG00000055130|ENST00000325222|CUL1 REV__ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.575927734375 3 438.578588 1312.71394 0.22485 9.8615E-05 -1.0925 -0.00047916 -0.86769 -0.00038055 438.5779310421363 85.092 0.33038 78.916 78.72 79.05 -6.1757 45 19 3 0 0 0 0.53952 1 55944 55944 11.631 0 1 35054000 + 34515 17286 23073 23502 40517 40517 0.070087330059323 LPESSKLSSL 10 Unmodified _LPESSKLSSL_ 0 0 0 nc|ENSG00000255561|Q9BRP7-2|FDXACB1;ENSG00000255561|ENST00000260257|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3013305664062 2 530.797872 1059.58119 0.29342 0.00015575 -1.0133 -0.00053783 -0.71983 -0.00038209 531.2997129966395 61.361 0.49503 61.32 61.147 61.642 -0.041096 37 24 2 0 0 0 0.60623 1 33455 33455 10.824 0 1 12339000 34516 10792 23074 23503 40518 40518 0.05378288549309218 LPESSLFSV 9 Unmodified _LPESSLFSV_ 0 0 0 ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 ENSG00000189376|ENST00000276704|C8orf76 ENSG00000189376|ENST00000276704|C8orf76 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5150146484375 1 978.514239 977.506963 0.060383 5.9086E-05 0.25653 0.00025102 0.31691 0.0003101 978.5145528237052 66.404 0.26161 65.921 65.807 66.068 -0.48323 22 12 2 0 0 0 0.28047 1 36340 36340 18.135 0 1 1972400 34517 9748 23075 23504 40519 40519 0.017309454577798533 LPESTHVEF 9 Unmodified _LPESTHVEF_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7609252929688 2 529.761289 1057.50803 0.13718 7.2671E-05 0.9608 0.00050899 1.098 0.00058167 529.7618824459003 44.3 0.40086 44.3 44.111 44.512 0 62 20 4 0 0 0 0.0090851 2 24024 24024;24137 85.357 45.399 1 146400000 34518 7527 23076 23505 40520;40521 40520 -0.018428401733444844 LPESTHVEF 9 Unmodified _LPESTHVEF_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.76171875 2 529.761289 1057.50803 0.8543 0.00045257 0.13707 7.2614E-05 0.99137 0.00052519 529.76132439138 49.924 0.53832 44.385 44.125 44.663 -5.5391 111 34 4 0 0 0 0.0055767 3 31112 31112;31247;31392 115.69 55.302 1 235720000 34519 7527 23076 23505 40522;40523;40524 40522 -0.018428401733444844 LPESTVFSGCQ 11 Unmodified _LPESTVFSGCQ_ 0 0 0 nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA nc|ENSG00000166220|Q96M53-2|TBATA nc|ENSG00000166220|Q96M53-2|TBATA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2955932617188 2 584.271164 1166.52777 0.21574 0.00012605 -2.7212 -0.0015899 -2.5054 -0.0014638 584.2693024383188 39.472 0.35353 39.472 39.154 39.508 0 25 16 2 0 0 0 0.27103 1 21007 21007 18.373 2.224 1 2354100 34520 7453 23077 23506 40525 40525 -0.04882832224870981 LPESVAVVSL 10 Unmodified _LPESVAVVSL_ 0 0 0 ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 ENSG00000197818|ENST00000361573|SLC9A8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2979736328125 2 507.297507 1012.58046 NaN NaN NaN NaN NaN NaN NaN 73.084 1 73.084 72.584 73.584 0 0 0 0 0.92825 1 40687 40687 6.7232 0.96273 1 34521 10006 23078 23507 40526 40526 0.0746749390025343 LPETAVRGY 9 Unmodified _LPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2713012695312 2 503.271824 1004.5291 -0.11169 -5.6213E-05 -1.1371 -0.00057229 -1.2488 -0.00062851 503.27121765133785 33.627 0.13617 33.627 33.572 33.709 0 13 8 2 0 0 0 0.094149 1 17665 17665 34.402 6.7729 1 7315500 34522 1197 23079 23508 40527 40527 0.027011699261947797 LPETAVRGY 9 Unmodified _LPETAVRGY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.1702270507812 2 503.271824 1004.5291 0.63062 0.00031737 -0.32153 -0.00016182 0.30909 0.00015555 503.27155499704867 38.373 0.34633 34.004 33.9 34.246 -4.3689 30 21 2 0 0 0 0.091436 1 22643 22643 34.402 18.555 1 17527000 34523 1197 23079 23508 40528 40528 0.027011699261947797 LPETEEDVGL 10 Unmodified _LPETEEDVGL_ 0 0 0 REV__ENSG00000154222|ENST00000284376|CC2D1B;REV__ENST00000491136.6_1_1:52826615-52827248:-|nuORF REV__ENSG00000154222|ENST00000284376|CC2D1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8480224609375 3 367.848521 1100.52373 0.69487 0.00025561 0.44285 0.0001629 1.1377 0.00041851 367.84867715986667 25.009 0.3044 22.126 21.945 22.249 -2.8831 41 28 2 0 0 0 0.6606 1 13590 13590 3.8763 1.1411 1 19304000 + 34524 21214;27888 23080 23509 40529 40529 -0.022505984469489704 LPETKIGSVKY 11 Unmodified _LPETKIGSVKY_ 0 0 0 ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1 ENSG00000171302|ENST00000392446|CANT1 ENSG00000171302|ENST00000392446|CANT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2401428222656 3 412.239573 1233.69689 -0.20458 -8.4337E-05 1.0317 0.00042532 0.82715 0.00034098 412.239881410696 37.213 0.19361 36.941 36.821 37.015 -0.27133 12 7 2 0 0 0 0.56863 1 19576 19576 12.929 7.6318 1 1504300 34525 8087 23081 23510 40530 40530 0.08938812400128882 LPETKIGSVKY 11 Unmodified _LPETKIGSVKY_ 0 0 0 ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1 ENSG00000171302|ENST00000392446|CANT1 ENSG00000171302|ENST00000392446|CANT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2410888671875 3 412.239573 1233.69689 1.7581 0.00072476 -0.69016 -0.00028451 1.0679 0.00044024 412.2392723214329 41.864 0.29974 37.256 37.077 37.377 -4.6079 31 18 2 0 0 0 0.13728 1 25192 25192 38.161 27.633 1 8644900 34526 8087 23081 23510 40531 40531 0.08938812400128882 LPETMTKSK 9 Unmodified _LPETMTKSK_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.0902709960938 2 517.781167 1033.54778 0.34524 0.00017876 1.0594 0.00054856 1.4047 0.00072732 517.7819156847889 92.131 0.51294 91.65 91.391 91.903 -0.48092 60 26 3 0 0 0 0.39863 2 50230 50230;50256 12.532 3.9383 1 1126500 34527 6860 23082 23511 40532;40533 40532 0.03234963505747146 LPETSKYEY 9 Unmodified _LPETSKYEY_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2742309570312 2 565.274229 1128.53391 -0.96301 -0.00054437 1.155 0.00065289 0.19199 0.00010853 565.2747611388378 32.344 0.16978 32.344 32.223 32.393 0 19 8 3 0 0 0 0.044296 1 16861 16861 47.594 15.289 1 3876300 34528 2565 23083 23512 40534 40534 -0.025219907217206128 LPETSKYEY 9 Unmodified _LPETSKYEY_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.27392578125 2 565.274229 1128.53391 1.1708 0.00066183 0.10304 5.8244E-05 1.2739 0.00072008 565.2745475385743 36.92 0.3551 32.637 32.472 32.827 -4.2835 36 21 2 0 0 0 0.026499 1 21551 21551 57.249 21.122 1 10578000 34529 2565 23083 23512 40535 40535 -0.025219907217206128 LPETVPPA 8 Unmodified _LPETVPPA_ 0 0 0 REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF REV__ENST00000585615.5_1_19:45571485-45574100:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.4561767578125 1 823.455996 822.448719 0.082796 6.8179E-05 -0.067659 -5.5714E-05 0.015137 1.2465E-05 823.4560373453255 69.269 0.34177 69.269 69.103 69.444 0 32 14 3 0 0 0 0.50586 1 38649 38649 34.187 0 1 3418200 + 34530 29099 23084 23513 40536 40536 0.030393086031381245 LPEVDNLTL 9 Unmodified _LPEVDNLTL_ 0 0 0 ENSG00000170458|ENST00000302014|CD14 ENSG00000170458|ENST00000302014|CD14 ENSG00000170458|ENST00000302014|CD14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2798767089844 2 507.279315 1012.54408 0.54514 0.00027654 0.40893 0.00020744 0.95407 0.00048398 507.2795563715354 68.264 0.49998 68.264 68.043 68.543 0 46 23 3 0 0 0 0.5029 1 37996 37996 7.2892 0 1 740680 34531 7988 23085 23514 40537 40537 0.03830617003529824 LPEVGFLQAY 10 Unmodified _LPEVGFLQAY_ 0 0 0 REV__ENST00000257696.4_1_7:128098190-128098253:+|nuORF REV__ENST00000257696.4_1_7:128098190-128098253:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8034057617188 2 568.802957 1135.59136 1.1275 0.00064131 -0.95313 -0.00054214 0.17434 9.9164E-05 568.802457236453 79.836 1.2588 79.346 78.75 80.009 -0.48932 126 52 3 0 0 0 0.67413 1 43456 43456 10.074 0 1 3546500 + 34532 24930 23086 23515 40538 40538 0.028988962745188473 LPEVHIFH 8 Unmodified _LPEVHIFH_ 0 0 0 nc|ENSG00000167562|Q9NV72|ZNF701;ENSG00000167562|ENST00000391785|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2723388671875 2 496.271627 990.528701 0.62274 0.00030905 -0.34384 -0.00017064 0.27889 0.00013841 496.2713988632455 46.543 0.35103 46.206 46.034 46.385 -0.33664 42 17 3 0 0 0 0.6895 1 24985 24985 18.135 0 1 29483000 34533 16359 23087 23516 40539 40539 0.03305794996992972 LPEVHIFH 8 Unmodified _LPEVHIFH_ 0 0 0 nc|ENSG00000167562|Q9NV72|ZNF701;ENSG00000167562|ENST00000391785|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2725219726562 2 496.271627 990.528701 0.9715 0.00048213 -0.58834 -0.00029198 0.38316 0.00019015 496.27131754520866 46.283 0.43406 46.25 46.038 46.472 -0.033417 57 20 4 0 0 0 0.5953 1 24844 24844 26.341 4.5946 1 93167000 34534 16359 23087 23516 40540 40540 0.03305794996992972 LPEVHIFH 8 Unmodified _LPEVHIFH_ 0 0 0 nc|ENSG00000167562|Q9NV72|ZNF701;ENSG00000167562|ENST00000391785|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 nc|ENSG00000167562|Q9NV72|ZNF701 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2725219726562 2 496.271627 990.528701 1.0231 0.00050773 0.094293 4.6795E-05 1.1174 0.00055453 496.27168300480565 80.213 0.6186 74.038 73.55 74.168 -6.1757 87 37 3 0 0 0 0.5953 1 52395 52395 26.341 4.5946 1 56294000 34535 16359 23087 23516 40541 40541 0.03305794996992972 LPEWEDGH 8 Unmodified _LPEWEDGH_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2846069335938 2 491.716882 981.41921 0.31267 0.00015374 -1.9455 -0.00095662 -1.6328 -0.00080287 491.71583819030394 58.17 0.35408 58.17 58.012 58.366 0 30 13 3 0 0 0 8.7369 1 32342 32342 5.7604 0.52976 1 966450 34536 8479 23088 23517 40542 40542 -0.07224255412995717 LPEWMKMRRS 10 Unmodified _LPEWMKMRRS_ 0 0 0 ENST00000316731.12_2_7:6840677-6841020:-|nuORF ENST00000316731.12_2_7:6840677-6841020:-|nuORF ENST00000316731.12_2_7:6840677-6841020:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.1753540039062 2 667.347017 1332.67948 NaN NaN NaN NaN NaN NaN NaN 61.553 1 61.553 61.053 62.053 0 0 0 0 0.97302 1 34318 34318 3.5965 0 1 34537 11741 23089 23518 40543 40543 0.026448703218420633 LPEWTIRDF 9 Unmodified _LPEWTIRDF_ 0 0 0 nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20221201_MKP_PDAC_01 4 588.8047485351562 2 588.806031 1175.59751 NaN NaN NaN NaN NaN NaN NaN 26.779 1 23.742 23.242 24.242 -3.0365 0 0 0 0.36554 1 14791 14791 21.747 2.4897 1 34538 16261 23090 23519 40544 40544 0.01673414506035442 LPEYAHNRM 9 Unmodified _LPEYAHNRM_ 0 0 0 REV__ENST00000561658.5_1_16:67486328-67515058:-|nuORF REV__ENST00000561658.5_1_16:67486328-67515058:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7733764648438 2 565.774208 1129.53386 NaN NaN NaN NaN NaN NaN NaN 62.818 1 62.331 61.831 62.831 -0.48617 0 0 0 0.46757 1 34247 34247 16.942 2.104 1 + 34539 21497 23091 23520 40545 40545 -0.025722692027102312 LPEYPPQGF 9 Unmodified _LPEYPPQGF_ 0 0 0 ENSG00000129038|ENST00000261921|LOXL1 ENSG00000129038|ENST00000261921|LOXL1 ENSG00000129038|ENST00000261921|LOXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2598876953125 2 524.260925 1046.5073 0.51389 0.00026941 -2.376 -0.0012456 -1.8621 -0.00097621 524.2593687203426 72.454 0.26711 71.978 71.878 72.145 -0.47609 17 12 2 0 0 0 0.46577 1 39664 39664 9.3474 0.75416 1 1237100 34540 4110 23092 23521 40546 40546 -0.014096348223802124 LPEYQARE 8 Unmodified _LPEYQARE_ 0 0 0 ENSG00000124134|ENST00000537075|KCNS1 ENSG00000124134|ENST00000537075|KCNS1 ENSG00000124134|ENST00000537075|KCNS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2542724609375 2 503.253631 1004.49271 0.050729 2.553E-05 0.34646 0.00017435 0.39718 0.00019988 503.25469233023705 22.459 0.76511 22.459 22.082 22.847 0 56 37 2 0 0 0 0.77186 1 11425 11425 10.824 0.75 1 943990 34541 3747 23093 23522 40547 40547 -0.009357069705288268 LPFADSLQF 9 Unmodified _LPFADSLQF_ 0 0 0 REV__ENSG00000269964|ENST00000684080|MEI4 REV__ENSG00000269964|ENST00000684080|MEI4 MSMS AL20221201_MKP_PDAC_01 4 519.2710571289062 2 519.26875 1036.52295 NaN NaN NaN NaN NaN NaN NaN 93.26 1 87.084 86.584 87.584 -6.1757 0 0 0 0.27711 1 61717 61717 26.341 1.6674 1 + 34542 24625 23094 23523 40548 40548 0.006146516946500924 LPFAEAEAF 9 Unmodified _LPFAEAEAF_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7497253417969 2 497.74765 993.480748 0.58902 0.00029318 1.0016 0.00049853 1.5906 0.00079172 497.7479093502785 74.043 0.24158 74.043 73.879 74.121 0 24 10 4 0 0 0 0.078417 1 41173 41173 38.151 15.003 1 2729200 34543 3263 23095 23524 40549 40549 -0.016253237137220822 LPFAEAEAF 9 Unmodified _LPFAEAEAF_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.4879760742188 1 994.488024 993.480748 0.27778 0.00027625 0.29346 0.00029184 0.57124 0.00056809 994.4881022142919 74.022 0.3303 74.022 73.879 74.21 0 34 15 3 0 0 0 0.03327 1 41265 41265 53.576 17.531 1 1705600 34544 3263 23095 23524 40550 40550 -0.016253237137220822 LPFAEAEAF 9 Unmodified _LPFAEAEAF_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.748291015625 2 497.74765 993.480748 0.67014 0.00033356 0.24611 0.0001225 0.91625 0.00045606 497.74799085264243 74.515 0.29482 74.039 73.887 74.182 -0.47588 19 12 2 0 0 0 0.2001 1 40787 40787 23.148 6.2061 1 776890 34545 3263 23095 23524 40551 40551 -0.016253237137220822 LPFAEAEAF 9 Unmodified _LPFAEAEAF_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7474670410156 2 497.74765 993.480748 0.57327 0.00028534 0.061565 3.0644E-05 0.63483 0.00031599 497.74751957789505 82.16 0.43462 75.984 75.745 76.179 -6.1757 41 23 2 0 0 0 0.052168 1 53952 53952 44.407 15.92 1 12801000 34546 3263 23095 23524 40552 40552 -0.016253237137220822 LPFAMSNFNHR 11 Unmodified _LPFAMSNFNHR_ 0 0 0 REV__ENSG00000178623|ENST00000407714|GPR35 REV__ENSG00000178623|ENST00000407714|GPR35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.3247680664062 2 667.327139 1332.63972 0.207 0.00013814 -3.1815 -0.0021231 -2.9745 -0.001985 667.3248436000692 57.83 0.24549 57.83 57.699 57.944 0 22 10 3 0 0 0 0.46131 1 32170 32170 18.373 3.1246 1 2116300 + 34547 23055 23096 23525 40553 40553 -0.013289333572174655 LPFAMSNFNHR 11 Unmodified _LPFAMSNFNHR_ 0 0 0 REV__ENSG00000178623|ENST00000407714|GPR35 REV__ENSG00000178623|ENST00000407714|GPR35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.3246459960938 2 667.327139 1332.63972 NaN NaN NaN NaN NaN NaN NaN 58.542 1 58.051 57.551 58.551 -0.49079 0 0 0 0.66488 1 31837 31837 18.373 6.1324 1 + 34548 23055 23096 23525 40554 40554 -0.013289333572174655 LPFCQPSKITY 11 Carbamidomethyl (C) _LPFC(Carbamidomethyl (C))QPSKITY_ LPFC(1)QPSKITY LPFC(63)QPSKITY 0 1 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3493041992188 2 677.347206 1352.67986 0.25888 0.00017535 1.2218 0.0008276 1.4807 0.001003 677.3480083513995 55.118 0.22601 54.64 54.548 54.774 -0.47798 22 10 3 0 0 0 0.014324 1 29901 29901 63.227 41.691 1 2205800 34549 1948 23097 23526 40555 40555 192 0.01762568522667607 LPFCQPSKITY 11 Carbamidomethyl (C) _LPFC(Carbamidomethyl (C))QPSKITY_ LPFC(1)QPSKITY LPFC(130)QPSKITY 0 1 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.3477783203125 2 677.347206 1352.67986 0.56931 0.00038562 0.084549 5.7269E-05 0.65386 0.00044289 677.3474047519048 54.823 0.38005 54.756 54.56 54.94 -0.066936 69 18 5 0 0 0 7.5234E-15 2 29827 29720;29827 132.22 99.434 1 91868000 34550 1948 23097 23526 40556;40557 40557 192 0.01762568522667607 LPFCQPSKITY 11 Carbamidomethyl (C) _LPFC(Carbamidomethyl (C))QPSKITY_ LPFC(1)QPSKITY LPFC(130)QPSKITY 0 1 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.3478393554688 2 677.347206 1352.67986 1.1379 0.00077078 -0.69439 -0.00047034 0.44355 0.00030043 677.346869325266 61.191 0.68822 55.043 54.744 55.432 -6.1478 109 35 4 0 0 0 7.5833E-15 3 39548 39287;39416;39548 132.13 99.349 1 279650000 34551 1948 23097 23526 40558;40559;40560 40560 192 0.01762568522667607 LPFDCTQAL 9 Carbamidomethyl (C) _LPFDC(Carbamidomethyl (C))TQAL_ LPFDC(1)TQAL LPFDC(55)TQAL 0 1 0 ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7584228515625 2 532.757692 1063.50083 0.27226 0.00014505 0.17204 9.1657E-05 0.4443 0.00023671 532.7574480266751 64.496 0.59515 64.496 64.214 64.809 0 72 28 4 0 0 0 0.031062 1 35869 35869 54.774 27.89 1 10092000 34552 1064 23098 23527 40561 40561 94 -0.028378960454119806 LPFDCTQAL 9 Carbamidomethyl (C) _LPFDC(Carbamidomethyl (C))TQAL_ LPFDC(1)TQAL LPFDC(55)TQAL 0 1 0 ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7579345703125 2 532.757692 1063.50083 0.30599 0.00016302 -0.062187 -3.3131E-05 0.2438 0.00012989 532.7576720906505 65.032 0.55857 64.548 64.295 64.854 -0.48428 75 25 4 0 0 0 0.031062 2 35497 35399;35497 54.774 30.401 1 17023000 34553 1064 23098 23527 40562;40563 40563 94 -0.028378960454119806 LPFDCTQAL 9 Carbamidomethyl (C) _LPFDC(Carbamidomethyl (C))TQAL_ 0 1 0 ENSG00000071894|ENST00000616140|CPSF1;ENST00000532560.5_1_8:145625727-145626379:-|nuORF ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.757692 1063.50083 0.7637 0.00040687 0.45803 0.00024402 1.2217 0.00065089 532.7578893775567 64.538 0.21501 64.527 64.451 64.666 -0.010529 0.003753 0.00039885 NaN 54.774 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1514300 34554 1064 23098 23527 94 -0.028378960454119806 LPFDDDNVM 9 Oxidation (M) _LPFDDDNVM(Oxidation (M))_ LPFDDDNVM(1) LPFDDDNVM(64) 0 0 1 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-6|MELK;nc|ENSG00000165304|Q14680-3|MELK nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2294921875 2 541.228965 1080.44338 -0.10649 -5.7635E-05 -0.21111 -0.00011426 -0.3176 -0.00017189 541.228871871838 48.899 0.51405 48.899 48.638 49.152 0 45 24 2 0 0 0 0.019303 2 26821 26821;26946 64.236 37.353 1 18245000 34555 7323 23099 23528 40564;40565 40564 1263 -0.09362783041660805 LPFDFTWKM 9 Oxidation (M) _LPFDFTWKM(Oxidation (M))_ LPFDFTWKM(1) LPFDFTWKM(76) 0 0 1 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.7929077148438 2 600.791535 1199.56852 0.1586 9.5284E-05 -0.011978 -7.196E-06 0.14662 8.8088E-05 600.7917261093845 78.214 0.26489 78.267 78.037 78.302 0.052452 26 10 3 0 0 0 0.011671 1 43126 43126 75.761 33.666 1 20799000 34556 1704 23100 23529 40566 40566 294 -0.023284461146204194 LPFDFTWKM 9 Oxidation (M) _LPFDFTWKM(Oxidation (M))_ LPFDFTWKM(1) LPFDFTWKM(93) 0 0 1 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2931518554688 2 600.791535 1199.56852 0.23782 0.00014288 -0.25515 -0.00015329 -0.017332 -1.0413E-05 600.7912647531684 90.163 1.0086 83.988 83.418 84.427 -6.1757 115 57 3 0 0 0 0.0082475 3 59442 59305;59442;59576 92.653 48.795 1 18759000 34557 1704 23100 23529 40567;40568;40569 40568 294 -0.023284461146204194 LPFDFTWKM 9 Unmodified _LPFDFTWKM_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.794189453125 2 592.794078 1183.5736 0.78833 0.00046732 -1.5856 -0.00093991 -0.79723 -0.00047259 592.7938463167304 99.363 0.28153 93.187 93.009 93.29 -6.1757 49 17 4 0 0 0 0.05483 1 66145 66145 43.772 11.467 1 200820000 34558 1704 23100 23530 40570 40570 -0.01084142251988851 LPFDGPNLPTL 11 Unmodified _LPFDGPNLPTL_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3214111328125 2 592.321514 1182.62847 0.46515 0.00027552 -0.36763 -0.00021775 0.09752 5.7763E-05 592.3212366794298 90.991 0.24432 90.496 90.419 90.663 -0.49457 18 12 2 0 0 0 0.5229 1 49779 49779 15.248 4.4246 1 1084900 34559 5395 23101 23531 40571 40571 0.04446567820286873 LPFDGTSLFG 10 Unmodified _LPFDGTSLFG_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2667846679688 2 527.266207 1052.51786 1.1195 0.00059025 0.30113 0.00015878 1.4206 0.00074903 527.2662733385689 54.388 0.48877 54.388 54.152 54.641 0 54 21 3 0 0 0 0.1028 1 30220 30220 46.021 2.1627 1 67868000 34560 16123 23102 23532 40572 40572 -0.006296521679360012 LPFDGTSLFG 10 Unmodified _LPFDGTSLFG_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.266845703125 2 527.266207 1052.51786 0.12811 6.7548E-05 0.66848 0.00035247 0.79659 0.00042002 527.2664417347917 55.003 0.34315 54.525 54.369 54.712 -0.47798 42 16 3 0 0 0 0.063761 1 29893 29893 54.774 4.8406 1 52733000 34561 16123 23102 23532 40573 40573 -0.006296521679360012 LPFDGTSLFG 10 Unmodified _LPFDGTSLFG_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2667236328125 2 527.266207 1052.51786 0.21132 0.00011142 0.33634 0.00017734 0.54766 0.00028876 527.2661465634241 54.61 0.26179 54.543 54.443 54.704 -0.06694 30 12 3 0 0 0 0.063761 1 29660 29660 54.774 4.8406 1 6141100 34562 16123 23102 23532 40574 40574 -0.006296521679360012 LPFDGTSLFG 10 Unmodified _LPFDGTSLFG_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2666015625 2 527.266207 1052.51786 1.1143 0.00058753 -0.18534 -9.7721E-05 0.92896 0.00048981 527.2663809562227 61.696 0.65685 55.52 55.167 55.823 -6.1757 82 33 3 0 0 0 0.063761 3 39763 39636;39763;39882 54.774 4.8406 1 318200000 34563 16123 23102 23532 40575;40576;40577 40576 -0.006296521679360012 LPFDHSRVIL 10 Unmodified _LPFDHSRVIL_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5639953613281 3 399.564391 1195.67134 0.61186 0.00024448 0.38832 0.00015516 1.0002 0.00039964 399.5645127321744 57.624 0.33563 57.558 57.378 57.714 -0.066036 39 16 3 0 0 0 0.37616 1 31338 31338 23.016 6.7411 1 5435300 34564 2814 23103 23533 40578 40578 0.08133382668393097 LPFDKETGF 9 Unmodified _LPFDKETGF_ 0 0 0 nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP nc|ENSG00000119705|Q9GZT3-2|SLIRP nc|ENSG00000119705|Q9GZT3-2|SLIRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2662353515625 2 527.266207 1052.51786 0.12811 6.7548E-05 0.66848 0.00035247 0.79659 0.00042002 527.2664417347917 55.003 0.34315 54.525 54.369 54.712 -0.47798 42 16 3 0 0 0 0.06294 1 29789 29789 41.84 3.8656 1 52733000 34565 3460 23104 23534 40579 40579 -0.006296521679587386 LPFDLRASF 9 Unmodified _LPFDLRASF_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2896118164062 2 533.290017 1064.56548 0.12427 6.6275E-05 0.67803 0.00036159 0.8023 0.00042786 533.2902844969778 77.087 0.50627 77.138 76.889 77.395 0.05011 67 20 4 0 0 0 0.07087 2 42655 42558;42655 39.95 11.515 1 37310000 34566 1673;3680 23105 23535 40580;40581 40581 0.03578046822894976 LPFDNLKCYHF 11 Unmodified _LPFDNLKCYHF_ 0 0 0 ENST00000463004.5_1_20:34326937-34327015:-|nuORF ENST00000463004.5_1_20:34326937-34327015:-|nuORF ENST00000463004.5_1_20:34326937-34327015:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 698.839111328125 2 698.839548 1395.66454 NaN NaN NaN NaN NaN NaN NaN 97.692 1 91.516 91.016 92.016 -6.1757 0 0 0 0.92234 1 64739 64739 6.2058 0.47393 1 34567 13689 23106 23536 40582 40582 -0.01746298274520086 LPFEGKVNL 9 Unmodified _LPFEGKVNL_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;ENST00000461129.5_1_6:126319428-126329623:+|nuORF nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7919006347656 2 508.792392 1015.57023 0.022453 1.1424E-05 -0.46402 -0.00023609 -0.44157 -0.00022467 508.7925937817545 59.108 0.36118 58.617 58.453 58.814 -0.49079 42 16 4 0 0 0 0.009483 2 32106 32106;32212 81.89 27.117 1 10681000 34568 941 23107 23537 40583;40584 40583 0.06306930965661195 LPFEGKVNL 9 Unmodified _LPFEGKVNL_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;ENST00000461129.5_1_6:126319428-126329623:+|nuORF nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.792724609375 2 508.792392 1015.57023 0.75235 0.00038279 -0.33349 -0.00016968 0.41886 0.00021311 508.79230334276406 58.718 0.17347 58.657 58.588 58.762 -0.060719 12 8 2 0 0 0 0.19127 1 32017 32017 24.021 4.7636 1 1378600 34569 941 23107 23537 40585 40585 0.06306930965661195 LPFEGKVNL 9 Unmodified _LPFEGKVNL_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11;ENST00000461129.5_1_6:126319428-126329623:+|nuORF nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.792392 1015.57023 0.3937 0.00020031 -0.76864 -0.00039108 -0.37494 -0.00019077 508.7923185018285 58.569 0.14269 58.569 58.511 58.654 0 -0.045357 -0.00031272 NaN 81.89 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1073100 34570 941 23107 23537 0.06306930965661195 LPFELQRNF 9 Unmodified _LPFELQRNF_ 0 0 0 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000493267.1_1_12:6765863-6772267:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4 nc|ENSG00000111653|Q9UNL4-4|ING4 nc|ENSG00000111653|Q9UNL4-4|ING4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.312744140625 2 582.314023 1162.61349 NaN NaN NaN NaN NaN NaN NaN 88.098 1 88.152 87.652 88.652 0.053352 0 0 0 0.73776 1 49006 49006 12.532 2.4576 1 34571 2807 23108 23538 40586 40586 0.03869120742933774 LPFEPSKKLY 10 Unmodified _LPFEPSKKLY_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.81787109375 2 611.347532 1220.68051 1.3673 0.00083588 0.64434 0.00039391 2.0116 0.0012298 611.3495521861289 70.89 0.38564 70.926 70.72 71.106 0.035515 29 17 2 0 0 0 0.23227 1 39108 39108 6.7232 0 1 3825200 34572 3031 23109 23539 40587 40587 0.07899731234056162 LPFFLIQTL 9 Unmodified _LPFFLIQTL_ 0 0 0 ENST00000593731.1_3_19:18288727-18288919:+|nuORF ENST00000593731.1_3_19:18288727-18288919:+|nuORF ENST00000593731.1_3_19:18288727-18288919:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 546.3265380859375 2 546.328611 1090.64267 NaN NaN NaN NaN NaN NaN NaN 99.057 1 92.881 92.381 93.381 -6.1757 0 0 0 0.36554 1 65857 65857 21.747 3.6003 1 34573 15739 23110 23540 40588 40588 0.10097265039235026 LPFFPIATY 9 Unmodified _LPFFPIATY_ 0 0 0 ENSG00000109084|ENST00000226230|TMEM97 ENSG00000109084|ENST00000226230|TMEM97 ENSG00000109084|ENST00000226230|TMEM97 MSMS AL20221201_MKP_PDAC_01 4 534.7903442382812 2 534.791861 1067.56917 NaN NaN NaN NaN NaN NaN NaN 101.26 1 95.082 94.582 95.582 -6.1757 0 0 0 0.065563 1 67913 67913 70.865 27.897 1 34574 2628 23111 23541 40589 40589 0.03808716596768136 LPFFPPTVR 9 Unmodified _LPFFPPTVR_ 0 0 0 ENST00000411466.6_3_16:30709600-30709672:+|nuORF ENST00000411466.6_3_16:30709600-30709672:+|nuORF ENST00000411466.6_3_16:30709600-30709672:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5313110351562 3 358.542927 1072.60695 1.0739 0.00038504 0.4001 0.00014345 1.474 0.00052849 358.87716793633854 49.896 0.14384 49.847 49.763 49.907 -0.048824 10 6 2 0 0 0 0.20207 1 26959 26959 11.495 4.393 1 525440 34575 12974 23112 23542 40590 40590 0.07355227582229418 LPFFTEREQTL 11 Unmodified _LPFFTEREQTL_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.8621826171875 2 690.861534 1379.70852 0.4739 0.0003274 0.39786 0.00027487 0.87177 0.00060227 690.8616963323793 68.277 0.23986 67.796 67.683 67.923 -0.48071 26 10 3 0 0 0 0.012739 1 37302 37302 64.927 33.658 1 2206100 34576 1477 23113 23543 40591 40591 0.03385009423459451 LPFFTEREQTL 11 Unmodified _LPFFTEREQTL_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 690.861534 1379.70852 0.44152 0.00030503 1.284 0.00088708 1.7255 0.0011921 690.8618224204178 67.728 0.22296 67.746 67.647 67.87 0.018028 -0.025149 0.00078396 NaN 64.927 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1620600 34577 1477 23113 23543 0.03385009423459451 LPFFTHRVL 9 Unmodified _LPFFTHRVL_ 0 0 0 ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2212524414062 3 377.222076 1128.6444 -0.19892 -7.5036E-05 -2.1867 -0.00082486 -2.3856 -0.00089989 377.22122379692104 36.178 0.15436 36.203 36.117 36.272 0.024967 11 6 2 0 0 0 0.46162 1 19170 19170 9.544 4.1413 1 1409600 34578 15492 23114 23544 40592 40592 0.0852231884784942 LPFFTHRVL 9 Unmodified _LPFFTHRVL_ 0 0 0 ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENST00000572010.5_1_16:67986261-67997363:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 377.222076 1128.6444 1.7997 0.0006789 -3.861 -0.0014564 -2.0612 -0.00077755 377.2208405188461 40.869 0.18988 36.262 36.211 36.401 -4.6079 0.02923 -0.0012244 NaN 9.544 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4912700 34579 15492 23114 23544 0.0852231884784942 LPFGEHPQQEY 11 Unmodified _LPFGEHPQQEY_ 0 0 0 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 MSMS AL20221201_MKP_PDAC_01 4 672.8148803710938 2 672.814584 1343.61462 NaN NaN NaN NaN NaN NaN NaN 48.149 1 42.915 42.415 43.415 -5.2339 0 0 0 3.1201E-07 1 29961 29961 97.741 61.614 1 34580 3195 23115 23545 40593 40593 -0.04344709678821346 LPFGGTFDL 9 Unmodified _LPFGGTFDL_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.4907836914062 1 966.49311 965.485833 0.33427 0.00032307 -0.052534 -5.0774E-05 0.28174 0.0002723 966.4930330552105 91.443 0.31931 90.948 90.756 91.076 -0.49457 28 14 3 0 0 0 0.14602 1 49945 49945 28.487 6.7402 1 968910 34581 4689 23116 23546 40594 40594 0.0017098014890279956 LPFGGTFDL 9 Unmodified _LPFGGTFDL_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4948120117188 1 966.49311 965.485833 0.25708 0.00024847 0.94248 0.0009109 1.1996 0.0011594 966.4942890771235 99.681 0.14119 93.505 93.432 93.574 -6.1757 14 8 2 0 0 0 0.0048787 1 66435 66435 117.6 55.026 1 47983000 34582 4689 23116 23546 40595 40595 0.0017098014890279956 LPFGGTFDL 9 Unmodified _LPFGGTFDL_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7496948242188 2 483.750193 965.485833 0.48483 0.00023453 -3.7124 -0.0017959 -3.2276 -0.0015613 483.7479131592777 99.682 0.12523 93.506 93.432 93.558 -6.1757 13 7 2 0 0 0 0.019979 1 66460 66460 63.563 19.156 1 20594000 34583 4689 23116 23546 40596 40596 0.0017098014890279956 LPFGHTHFDY 10 Unmodified _LPFGHTHFDY_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8614807128906 3 411.861096 1232.56146 0.39674 0.0001634 0.32319 0.00013311 0.71993 0.00029651 411.8612506066097 49.038 0.26013 48.666 48.539 48.799 -0.37172 39 12 4 0 0 0 0.59286 1 26327 26327 11.518 1.9739 1 13487000 34584 2669 23117 23547 40597 40597 -0.04552042670798073 LPFGKVTNL 9 Unmodified _LPFGKVTNL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7953796386719 2 494.794935 987.575317 0.96965 0.00047978 0.24574 0.00012159 1.2154 0.00060137 494.79499586286346 57.573 0.4159 57.507 57.319 57.735 -0.066036 73 20 5 0 0 0 0.011671 2 31407 31309;31407 75.761 0 1 81972000 34585 3421;443;15691 23118 23548 40598;40599 40599 0.08103234828263339 LPFGKVTNL 9 Unmodified _LPFGKVTNL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7956237792969 2 494.794935 987.575317 1.0743 0.00053155 0.67373 0.00033336 1.748 0.00086491 494.7951672195149 63.609 0.73723 57.434 57.143 57.88 -6.1757 101 41 3 0 0 0 0.0085366 2 41162 41162;41298 90.135 0 1 205740000 34586 3421;443;15691 23118 23548 40600;40601 40600 0.08103234828263339 LPFGKVTNL 9 Unmodified _LPFGKVTNL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7949829101562 2 494.794935 987.575317 0.69158 0.00034219 0.062337 3.0844E-05 0.75391 0.00037303 494.7948274816721 66.398 0.82774 60.222 59.692 60.519 -6.1757 64 47 2 0 0 0 0.017075 1 43298 43298 66.457 0 1 12432000 34587 3421;443;15691 23118 23548 40602 40602 0.08103234828263339 LPFGKVTNL 9 Unmodified _LPFGKVTNL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.794935 987.575317 0.48411 0.00023954 -0.24529 -0.00012137 0.23883 0.00011817 494.7948074456992 57.94 0.24834 57.45 57.35 57.598 -0.48974 -0.013393 -0.00055575 NaN 90.135 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4368800 34588 3421;443;15691 23118 23548 0.08103234828263339 LPFGWRWKD 9 Unmodified _LPFGWRWKD_ 0 0 0 REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8982849121094 3 402.213581 1203.61891 NaN NaN NaN NaN NaN NaN NaN 27.333 1 27.361 26.861 27.861 0.028664 0 0 0 0.84737 1 14202 14202 0.96228 0.69326 1 + 34589 25625 23119 23549 40603 40603 0.02524844325421327 LPFHSVIY 8 Unmodified _LPFHSVIY_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2684020996094 2 488.268553 974.522553 0.5886 0.0002874 -0.13276 -6.4823E-05 0.45584 0.00022257 488.2681016489885 59.259 0.45055 59.206 58.929 59.38 -0.053059 42 22 3 0 0 0 0.2655 2 32259 32259;32360 59.795 7.1021 1 22392000 34590 4983 23120 23550 40604;40605 40604 0.03427276765467013 LPFHSVIY 8 Unmodified _LPFHSVIY_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;ENST00000558733.5_1_15:58947546-59041769:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2692565917969 2 488.268553 974.522553 0.61552 0.00030054 -1.269 -0.00061962 -0.6535 -0.00031908 488.26782742028206 65.148 0.50191 58.972 58.734 59.236 -6.1757 63 27 3 0 0 0 0.2655 2 42195 42195;42333 59.795 16.827 1 42644000 34591 4983 23120 23550 40606;40607 40606 0.03427276765467013 LPFHTSTEM 9 Oxidation (M) _LPFHTSTEM(Oxidation (M))_ LPFHTSTEM(1) LPFHTSTEM(74) 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2465209960938 2 539.747324 1077.4801 -1.0397 -0.00056119 -0.35067 -0.00018927 -1.3904 -0.00075046 539.7472504300066 32.583 0.30844 32.583 32.444 32.753 0 62 18 5 0 0 0 0.012148 2 16973 16973;17086 74.423 28.723 1 52401000 34592 6867 23121 23551 40608;40609 40608 1190 -0.055544864250805404 LPFHTSTEM 9 Oxidation (M) _LPFHTSTEM(Oxidation (M))_ LPFHTSTEM(1) LPFHTSTEM(150) 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7464599609375 2 539.747324 1077.4801 -0.37468 -0.00020223 0.47208 0.00025481 0.097402 5.2573E-05 539.7478025860734 32.641 0.32433 32.512 32.35 32.675 -0.12915 44 13 5 0 0 0 0.000405 2 16961 16961;17061 146.01 74.085 1 16324000 34593 6867 23121 23551 40610;40611 40610 1190 -0.055544864250805404 LPFHTSTEM 9 Oxidation (M) _LPFHTSTEM(Oxidation (M))_ LPFHTSTEM(1) LPFHTSTEM(140) 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7473754882812 2 539.747324 1077.4801 1.0646 0.00057462 -0.84258 -0.00045478 0.22203 0.00011984 539.7471068342375 37.143 0.50292 32.859 32.599 33.102 -4.2835 87 30 4 0 0 0 0.0010099 3 21766 21638;21766;21894 139.54 67.622 1 100440000 34594 6867 23121 23551 40612;40613;40614 40613 1190 -0.055544864250805404 LPFHTSTEM 9 Oxidation (M) _LPFHTSTEM(Oxidation (M))_ 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.747324 1077.4801 -0.12152 -6.5592E-05 0.48457 0.00026154 0.36305 0.00019595 539.7475573579452 32.493 0.20152 32.523 32.389 32.591 0.029743 -0.096318 0.00073925 NaN 146.01 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1560500 34595 6867 23121 23551 1190 -0.055544864250805404 LPFHTSTEM 9 Unmodified _LPFHTSTEM_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7499389648438 2 531.749867 1061.48518 0.14192 7.5466E-05 0.75197 0.00039986 0.8939 0.00047533 531.7496614637473 43.367 0.15582 43.056 42.989 43.144 -0.31039 10 7 2 0 0 0 0.03327 1 23103 23103 53.576 17.531 1 5451200 34596 6867 23121 23552 40615 40615 -0.04310182562448972 LPFHTSTEM 9 Unmodified _LPFHTSTEM_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7504272460938 2 531.749867 1061.48518 0.6182 0.00032873 -0.41684 -0.00022166 0.20136 0.00010707 531.7497632768697 49.037 0.43156 43.641 43.407 43.839 -5.3961 67 28 3 0 0 0 0.0021514 2 30619 30489;30619 131.3 68.725 1 151150000 34597 6867 23121 23552 40616;40617 40617 -0.04310182562448972 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(42)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2811279296875 2 613.281531 1224.54851 0.4244 0.00026028 0.31709 0.00019446 0.74149 0.00045474 613.2820713330093 50.667 0.50504 50.667 50.433 50.938 0 42 27 3 0 0 0 0.13184 1 27853 27853 42.095 27.256 1 4875700 34598 6867 23122 23553 40618 40618 1190 -0.05478241845230514 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(93)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.2821044921875 2 613.281531 1224.54851 0.25645 0.00015727 -0.24968 -0.00015313 0.006765 4.1488E-06 613.2817280878232 51.155 0.39445 50.742 50.518 50.912 -0.41351 69 19 5 0 0 0 0.0071864 2 27595 27491;27595 92.822 74.676 1 39561000 34599 6867 23122 23553 40619;40620 40620 1190 -0.05478241845230514 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(48)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.28125 2 613.281531 1224.54851 -0.058831 -3.608E-05 -0.35849 -0.00021985 -0.41732 -0.00025593 613.2813802887521 51.37 0.35947 50.957 50.817 51.176 -0.41351 53 18 4 0 0 0 0.092434 1 27710 27710 48.346 33.508 1 38429000 34600 6867 23122 23553 40621 40621 1190 -0.05478241845230514 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(64)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2816162109375 2 613.281531 1224.54851 0.62728 0.0003847 -0.96239 -0.00059022 -0.33511 -0.00020551 613.2809745404593 50.994 0.53698 50.941 50.51 51.047 -0.053871 44 26 3 0 0 0 0.037795 2 27422 27422;27535 64.236 33.508 1 4788000 34601 6867 23122 23553 40622;40623 40622 1190 -0.05478241845230514 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(100)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.284912109375 2 613.281531 1224.54851 0.87555 0.00053696 1.6021 0.00098251 2.4776 0.0015195 613.2826336641645 57.24 0.31203 51.213 51.149 51.461 -6.0275 31 16 2 0 0 0 0.0029268 3 36616 36609;36616;36737 104.8 76.305 1 83040000 34602 6867 23122 23553 40624;40625;40626 40625 1190 -0.05478241845230514 LPFHTSTEMF 10 Oxidation (M) _LPFHTSTEM(Oxidation (M))F_ LPFHTSTEM(1)F LPFHTSTEM(71)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 613.278564453125 2 613.281531 1224.54851 0.53073 0.00032549 -3.9635 -0.0024307 -3.4328 -0.0021053 613.780721221567 56.945 0.18125 50.968 50.811 50.992 -5.9769 16 10 3 0 0 0 0.076231 1 36377 36377 71.134 31.176 1 84131000 34603 6867 23122 23553 40627 40627 1190 -0.05478241845230514 LPFHTSTEMF 10 Unmodified _LPFHTSTEMF_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.78515625 2 605.284074 1208.5536 0.52839 0.00031982 0.96132 0.00058187 1.4897 0.0009017 605.2839455768833 62.779 0.3393 62.293 62.1 62.44 -0.48617 42 16 4 0 0 0 0.063761 1 34171 34171 54.774 35.517 1 8204800 34604 6867 23122 23554 40628 40628 -0.04233937982621683 LPFHTSTEMF 10 Unmodified _LPFHTSTEMF_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MSMS AL20221201_MKP_PDAC_01 4 605.2845458984375 2 605.284074 1208.5536 NaN NaN NaN NaN NaN NaN NaN 71.68 1 65.504 65.004 66.004 -6.1757 0 0 0 0.021206 1 46857 46857 81.613 55.345 1 34605 6867 23122 23554 40629 40629 -0.04233937982621683 LPFIGFTY 8 Unmodified _LPFIGFTY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.5087890625 1 957.508032 956.500755 0.34711 0.00033236 -0.88524 -0.00084763 -0.53813 -0.00051526 957.5076629575398 100.63 0.12746 94.452 94.345 94.472 -6.1757 10 8 2 0 0 0 0.053468 1 67313 67313 144.01 39.697 1 20948000 34606 4591 23123 23555 40630 40630 0.02076472016904063 LPFISHCCD 9 Unmodified _LPFISHCCD_ 0 0 0 ENST00000368655.4_1_1:153782348-153782624:-|nuORF ENST00000368655.4_1_1:153782348-153782624:-|nuORF ENST00000368655.4_1_1:153782348-153782624:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7278442382812 2 517.725338 1033.43612 NaN NaN NaN NaN NaN NaN NaN 61.888 1 61.888 61.388 62.388 0 0 0 0 0.82739 1 34506 34506 4.3292 1.44 1 34607 12276 23124 23556 40631 40631 -0.07925794123048036 LPFIYRTSY 9 Unmodified _LPFIYRTSY_ 0 0 0 ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3116455078125 2 580.310949 1158.60735 0.73672 0.00042753 -0.51958 -0.00030152 0.21714 0.00012601 580.3109731659836 60.432 0.2271 60.388 60.249 60.476 -0.04351 22 10 3 0 0 0 0.020316 1 32932 32932 78.728 40.754 1 9838500 34608 10388 23125 23557 40632 40632 0.03438602511437239 LPFKDMDKF 9 Oxidation (M) _LPFKDM(Oxidation (M))DKF_ LPFKDM(1)DKF LPFKDM(46)DKF 0 0 1 ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1947937011719 3 386.195087 1155.56343 -0.0034253 -1.3228E-06 -0.35172 -0.00013583 -0.35514 -0.00013715 386.52930047199163 39.053 0.25167 38.766 38.585 38.836 -0.28687 25 10 3 0 0 0 0.047194 1 20584 20584 46.022 33.15 1 4372200 34609 6315 23126 23558 40633 40633 1115 -0.00812749977239946 LPFKDMDKF 9 Unmodified _LPFKDMDKF_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MSMS AL20221201_MKP_PDAC_01 4 380.8641052246094 3 380.863449 1139.56852 NaN NaN NaN NaN NaN NaN NaN 56.447 1 50.47 49.97 50.97 -5.9769 0 0 0 0.076083 1 36016 36016 53.317 22.613 1 34610 6315 23126 23559 40634 40634 0.004315538853916223 LPFKDQLKLLY 11 Unmodified _LPFKDQLKLLY_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.943359375 3 459.942868 1376.80677 1.2379 0.00056936 -0.61718 -0.00028387 0.62072 0.0002855 459.94302707109193 94.188 0.22047 88.012 87.88 88.1 -6.1757 20 12 2 0 0 0 0.12907 1 62371 62371 39.111 12.99 1 7114600 34611 2063 23127 23560 40635 40635 0.133442377393294 LPFKETQEL 9 Unmodified _LPFKETQEL_ 0 0 0 nc|ENSG00000164463|Q8IUR6-2|CREBRF;ENST00000520464.1_1_5:172507634-172535847:+|nuORF;ENSG00000164463|ENST00000296953|CREBRF;nc|ENSG00000164463|Q8IUR6-3|CREBRF nc|ENSG00000164463|Q8IUR6-2|CREBRF nc|ENSG00000164463|Q8IUR6-2|CREBRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8008422851562 2 552.800414 1103.58628 0.5443 0.00030089 0.5948 0.0003288 1.1391 0.00062969 552.8007991748669 46.729 0.27428 46.729 46.565 46.839 0 30 12 3 0 0 0 0.0089732 1 25543 25543 86.332 21.097 1 7831800 34612 7198 23128 23561 40636 40636 0.03862592411906007 LPFKHVRDY 9 Unmodified _LPFKHVRDY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2171020507812 3 392.217102 1173.62948 0.36889 0.00014468 0.58361 0.0002289 0.9525 0.00037359 392.21727856892267 26.279 0.18954 26.247 26.15 26.339 -0.031708 19 10 3 0 0 0 0.094905 1 13495 13495 34.222 15.849 1 17174000 34613 2696 23129 23562 40637 40637 0.049608269798454785 LPFKHVRDY 9 Unmodified _LPFKHVRDY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8214111328125 2 587.822015 1173.62948 NaN NaN NaN NaN NaN NaN NaN 26.318 1 26.286 25.786 26.786 -0.031708 0 0 0 0.83336 1 13530 13530 2.9952 0 1 34614 2696 23129 23562 40638 40638 0.049608269798454785 LPFKHVRDY 9 Unmodified _LPFKHVRDY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5504455566406 3 392.217102 1173.62948 0.11307 4.4348E-05 0.351 0.00013767 0.46407 0.00018202 392.2172136567032 26.008 0.24699 26.035 25.912 26.159 0.026951 25 11 3 0 0 0 0.067618 1 13468 13468 40.725 25.768 1 29442000 34615 2696 23129 23562 40639 40639 0.049608269798454785 LPFKHVRDY 9 Unmodified _LPFKHVRDY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5517883300781 3 392.217102 1173.62948 0.79966 0.00031364 0.12855 5.042E-05 0.92822 0.00036406 392.21710246241895 29.871 0.35583 26.569 26.37 26.726 -3.3016 40 17 3 0 0 0 0.047194 2 16758 16758;16869 46.022 26.396 1 87379000 34616 2696 23129 23562 40640;40641 40640 0.049608269798454785 LPFKHVRDY 9 Unmodified _LPFKHVRDY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MSMS AL20221201_MKP_PDAC_01 4 587.821533203125 2 587.822015 1173.62948 NaN NaN NaN NaN NaN NaN NaN 29.953 1 26.651 26.151 27.151 -3.3016 0 0 0 0.027454 1 16876 16876 57.722 21.595 1 34617 2696 23129 23562 40642 40642 0.049608269798454785 LPFLAAFYL 9 Unmodified _LPFLAAFYL_ 0 0 0 ENSG00000120436|ENST00000366834|GPR31 ENSG00000120436|ENST00000366834|GPR31 ENSG00000120436|ENST00000366834|GPR31 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.267578125 2 527.802229 1053.5899 0.52785 0.0002786 3.9256 0.0020719 4.4535 0.0023505 527.8050490789586 52.793 0.1801 52.73 52.645 52.826 -0.063423 12 8 2 0 0 0 0.203 1 28565 28565 9.3474 2.9933 1 1609100 34618 3514 23130 23563 40643 40643 0.06525306976413958 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4931030273438 1 966.49311 965.485833 0.16249 0.00015704 -1.3174 -0.0012733 -1.1549 -0.0011162 966.4918669892382 77.557 0.19092 77.557 77.477 77.668 0 22 16 2 0 0 0 0.42423 1 43087 43087 42.095 20.348 1 1415900 34619 8367 23131 23564 40644 40644 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7502136230469 2 483.750193 965.485833 -0.65211 -0.00031546 0.17907 8.6624E-05 -0.47304 -0.00022883 483.7502571058827 77.985 0.42847 77.503 77.353 77.782 -0.4826 79 32 3 0 0 0 0.44122 2 42782 42667;42782 40.449 15.775 1 10555000 34620 8367 23131 23564 40645;40646 40646 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.4927368164062 1 966.49311 965.485833 -0.84365 -0.00081538 0.18356 0.00017741 -0.66009 -0.00063797 966.4929798485633 78.049 0.35448 77.567 77.405 77.76 -0.4826 64 28 3 0 0 0 0.052857 2 42777 42675;42777 146.01 68.023 1 11779000 34621 8367 23131 23564 40647;40648 40648 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 966.489990234375 1 966.49311 965.485833 0.45944 0.00044404 -0.91262 -0.00088204 -0.45318 -0.000438 966.4921978211642 77.542 0.2562 77.592 77.441 77.698 0.05011 18 10 2 0 0 0 0.18875 1 42769 42769 74.423 23.568 1 2192400 34622 8367 23131 23564 40649 40649 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.7503356933594 2 483.750193 965.485833 0.27497 0.00013302 0.40838 0.00019755 0.68335 0.00033057 483.75015460570745 77.504 0.27974 77.555 77.418 77.698 0.05011 19 11 2 0 0 0 0.57408 1 42793 42793 28.173 10.038 1 2275300 34623 8367 23131 23564 40650 40650 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4944458007812 1 966.49311 965.485833 0.79354 0.00076695 -0.043252 -4.1803E-05 0.75029 0.00072515 966.4928580889757 85.88 0.49786 79.704 79.479 79.977 -6.1757 60 27 3 0 0 0 0.055731 3 56461 56461;56587;56715 133.7 60.582 1 36622000 34624 8367 23131 23564 40651;40652;40653 40651 0.0017098014889143087 LPFLDAQY 8 Unmodified _LPFLDAQY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7506408691406 2 483.750193 965.485833 1.0191 0.00049298 0.20653 9.9907E-05 1.2256 0.00059288 483.7501341055738 85.925 0.57243 79.749 79.445 80.017 -6.1757 91 31 4 0 0 0 0.48233 3 56631 56502;56631;56765 36.466 13.982 1 90266000 34625 8367 23131 23564 40654;40655;40656 40655 0.0017098014889143087 LPFLEASTL 9 Unmodified _LPFLEASTL_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1 nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MSMS AL20221201_MKP_PDAC_01 4 495.7800598144531 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 95.387 1 89.212 88.712 89.712 -6.1757 0 0 0 0.060495 1 63179 63179 53.576 17.531 1 34626 3756 23132 23565 40657 40657 0.04815822354487409 LPFLEHLEL 9 Unmodified _LPFLEHLEL_ 0 0 0 nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8134155273438 2 555.813325 1109.6121 0.66332 0.00036868 0.35996 0.00020007 1.0233 0.00056875 555.8135508247042 89.301 0.31962 88.799 88.617 88.937 -0.50171 22 13 2 0 0 0 0.32871 1 48800 48800 15.847 3.3156 1 542550 34627 6363 23133 23566 40658 40658 0.061674866541807205 LPFLEHLEL 9 Unmodified _LPFLEHLEL_ 0 0 0 nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8131103515625 2 555.813325 1109.6121 1.008 0.00056027 -0.18669 -0.00010376 0.82133 0.00045651 555.8134509267263 99.242 0.10395 93.066 93.009 93.113 -6.1757 10 5 3 0 0 0 0.0082281 1 66028 66028 92.822 48.415 1 45425000 34628 6363 23133 23566 40659 40659 0.061674866541807205 LPFLEQLY 8 Unmodified _LPFLEQLY_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.781494140625 2 511.781493 1021.54843 0.28524 0.00014598 -0.23634 -0.00012095 0.048907 2.503E-05 511.78125045647613 92.295 0.28381 92.295 92.147 92.431 0 37 22 2 0 0 0 0.70131 1 51008 51008 17.087 5.9721 1 781850 34629 8841 23134 23567 40660 40660 0.038521262170888804 LPFLGNALSF 10 Unmodified _LPFLGNALSF_ 0 0 0 ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;ENSG00000160870|ENST00000336374|CYP3A7;nc|ENSG00000160870|P24462-2|CYP3A7 ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8009643554688 2 539.800217 1077.58588 0.1077 5.8137E-05 -2.387 -0.0012885 -2.2793 -0.0012304 539.7989513256051 51.906 0.3263 51.472 51.305 51.631 -0.43367 38 16 4 0 0 0 0.35903 1 27990 27990 24.021 2.2739 1 7498100 34630 6762 23135 23568 40661 40661 0.05019217482708882 LPFLGVLAL 9 Unmodified _LPFLGVLAL_ 0 0 0 ENSG00000145354|ENST00000273986|CISD2 ENSG00000145354|ENST00000273986|CISD2 ENSG00000145354|ENST00000273986|CISD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.6040649414062 1 942.602266 941.59499 0.46254 0.00043599 0.50702 0.00047792 0.96956 0.00091391 942.6024291101012 102.33 0.087517 96.153 96.093 96.181 -6.1757 11 5 3 0 0 0 0.016115 1 68669 68669 67.413 11.365 1 7363100 34631 5687 23136 23569 40662 40662 0.1218561083902614 LPFLIEDY 8 Unmodified _LPFLIEDY_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MSMS AL20221201_MKP_PDAC_01 4 505.2658081054688 2 505.265676 1008.5168 NaN NaN NaN NaN NaN NaN NaN 99.837 1 93.661 93.161 94.161 -6.1757 0 0 0 0.9185 1 66613 66613 17.087 0 1 34632 5541 23137 23570 40663 40663 0.012881334631288155 LPFLKPDDIQY 11 Unmodified _LPFLKPDDIQY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.8604736328125 2 674.861003 1347.70745 0.33414 0.0002255 -0.11714 -7.905E-05 0.217 0.00014645 674.8605800329714 70.764 0.2863 70.287 70.148 70.434 -0.47736 40 14 4 0 0 0 0.029988 2 38670 38670;38780 55.235 36.862 1 3779800 34633 3132 23138 23571 40664;40665 40664 0.0475079505456506 LPFLKPDDIQY 11 Unmodified _LPFLKPDDIQY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.36376953125 2 674.861003 1347.70745 0.74853 0.00050515 0.21785 0.00014702 0.96638 0.00065218 674.8610447273571 70.214 0.24609 70.249 70.133 70.379 0.035515 32 11 4 0 0 0 0.0018376 1 38631 38631 80.676 63.563 1 5801400 34634 3132 23138 23571 40666 40666 0.0475079505456506 LPFLKPDDIQY 11 Unmodified _LPFLKPDDIQY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.862548828125 2 674.861003 1347.70745 0.86811 0.00058585 0.8205 0.00055372 1.6886 0.0011396 674.8612429648764 83.895 0.94305 77.719 77.125 78.068 -6.1757 108 49 3 0 0 0 8.6319E-10 4 54967 54967;55090;55214;55343 117.84 88.756 1 14039000 34635 3132 23138 23571 40667;40668;40669;40670 40667 0.0475079505456506 LPFLLENPSGY 11 Unmodified _LPFLLENPSGY_ 0 0 0 ENSG00000214160|ENST00000397676|ALG3;nc|ENSG00000214160|Q92685-2|ALG3 ENSG00000214160|ENST00000397676|ALG3 ENSG00000214160|ENST00000397676|ALG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.3280029296875 2 625.326796 1248.63904 0.33762 0.00021112 -0.0026636 -1.6656E-06 0.33495 0.00020946 625.3268506570904 89.843 0.34322 89.342 89.149 89.492 -0.50171 33 17 2 0 0 0 0.557 2 49073 49073;49171 22.736 19.14 1 1376400 34636 10483 23139 23572 40671;40672 40671 0.02466550474696305 LPFLLPEDGY 10 Unmodified _LPFLLPEDGY_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3038330078125 2 582.30279 1162.59103 0.18324 0.0001067 0.90179 0.00052511 1.085 0.00063182 582.30323195874 92.768 0.28703 92.768 92.633 92.92 0 34 18 3 0 0 0 0.66229 2 51278 51278;51301 12.532 8.2023 1 482300 34637 4210 23140 23573 40673;40674 40673 0.01623476554664194 LPFLLPEDGY 10 Unmodified _LPFLLPEDGY_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.304443359375 2 582.30279 1162.59103 0.55134 0.00032104 -0.5829 -0.00033942 -0.03156 -1.8378E-05 582.302584909972 99.921 0.15517 93.745 93.664 93.819 -6.1757 26 11 3 0 0 0 0.06987 1 66678 66678 74.423 59.841 1 62050000 34638 4210 23140 23573 40675 40675 0.01623476554664194 LPFLLYLRY 9 Unmodified _LPFLLYLRY_ 0 0 0 ENST00000552189.5_1_12:48438897-48439101:-|nuORF ENST00000552189.5_1_12:48438897-48439101:-|nuORF ENST00000552189.5_1_12:48438897-48439101:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3535766601562 2 599.35516 1196.69577 NaN NaN NaN NaN NaN NaN NaN 92.82 1 92.363 91.863 92.863 -0.4574 0 0 0 0.82015 1 50728 50728 5.2307 0 1 34639 15176 23141 23574 40676 40676 0.10528642821873291 LPFLPSTEDVY 11 Unmodified _LPFLPSTEDVY_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8239135742188 2 640.824086 1279.63362 1.1293 0.00072367 0.32752 0.00020988 1.4568 0.00093355 640.8244641311329 95.772 1.0233 89.597 89.162 90.185 -6.1757 152 62 3 0 0 0 2.7161E-06 5 63331 63207;63331;63460;63596;63728 100.37 58.532 1 37422000 34640 10259 23142 23575 40677;40678;40679;40680;40681 40678 0.0049882689224887145 LPFLQNRKV 9 Unmodified _LPFLQNRKV_ 0 0 0 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2295837402344 3 372.229231 1113.66586 0.30199 0.00011241 0.33879 0.00012611 0.64078 0.00023852 372.2294289722687 48.461 0.31129 48.417 48.261 48.573 -0.04369 46 15 4 0 0 0 0.087258 1 26106 26106 26.268 0.24744 1 44088000 34641 3979 23143 23576 40682 40682 0.1135770387654702 LPFLQNRKV 9 Unmodified _LPFLQNRKV_ 0 0 0 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.229736328125 3 372.229231 1113.66586 1.6111 0.0005997 -0.19931 -7.4188E-05 1.4118 0.00052551 372.22898495269885 53.552 0.45855 47.748 47.515 47.973 -5.8042 62 29 3 0 0 0 0.052168 2 33785 33785;33912 32.786 6.765 1 60530000 34642 3979 23143 23576 40683;40684 40683 0.1135770387654702 LPFLRITSL 9 Unmodified _LPFLRITSL_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MSMS AL20221201_MKP_PDAC_01 4 530.3319091796875 2 530.331685 1058.64882 NaN NaN NaN NaN NaN NaN NaN 98.929 1 92.753 92.253 93.253 -6.1757 0 0 0 0.019104 1 65734 65734 79.596 4.6673 1 34643 5601 23144 23577 40685 40685 0.12183783270756976 LPFLSPSNL 9 Unmodified _LPFLSPSNL_ 0 0 0 REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2793884277344 2 494.279118 986.543683 0.63914 0.00031591 -0.14411 -7.1232E-05 0.49503 0.00024468 494.27898483308707 55.52 0.39709 55.042 54.841 55.238 -0.47798 58 18 4 0 0 0 0.044011 1 30167 30167 47.749 2.0491 1 27710000 + 34644 29015 23145 23578 40686 40686 0.049872420743326984 LPFLSPSNL 9 Unmodified _LPFLSPSNL_ 0 0 0 REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF REV__ENST00000575231.1_1_16:67963850-67964919:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2797241210938 2 494.279118 986.543683 1.1401 0.00056352 -0.83442 -0.00041244 0.30567 0.00015109 494.2789622061346 61.471 0.60641 55.323 55.076 55.682 -6.1478 79 30 3 0 0 0 0.032796 1 39633 39633 53.833 4.2785 1 127250000 + 34645 29015 23145 23578 40687 40687 0.049872420743326984 LPFLTTEVNVL 11 Unmodified _LPFLTTEVNVL_ 0 0 0 ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF ENST00000484157.5_1_1:155108136-155110067:+|nuORF ENST00000484157.5_1_1:155108136-155110067:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3595581054688 2 623.358096 1244.70164 4.5237 0.0028199 -1.3238 -0.00082523 3.1999 0.0019947 623.3573046576505 99.045 0.15706 99.016 98.92 99.077 -0.028282 10 5 2 0 0 0 0.10551 1 55030 55030 41.84 23.693 1 5348500 34646 14147 23146 23579 40688 40688 0.08907696542905796 LPFLTTEVNVL 11 Unmodified _LPFLTTEVNVL_ 0 0 0 ENST00000484157.5_1_1:155108136-155110067:+|nuORF;ENST00000490276.5_1_1:155108315-155110067:+|nuORF ENST00000484157.5_1_1:155108136-155110067:+|nuORF ENST00000484157.5_1_1:155108136-155110067:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8614501953125 2 623.358096 1244.70164 0.95471 0.00059512 0.26961 0.00016807 1.2243 0.00076319 623.3578618611714 100.74 0.12073 94.569 94.515 94.635 -6.1757 18 8 3 0 0 0 2.9767E-06 1 67469 67469 99.799 61.623 1 34547000 34647 14147 23146 23579 40689 40689 0.08907696542905796 LPFMATVL 8 Oxidation (M) _LPFM(Oxidation (M))ATVL_ LPFM(1)ATVL LPFM(50)ATVL 0 0 1 ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 907.49560546875 1 907.495752 906.488476 0.37326 0.00033873 1.2299 0.0011162 1.6032 0.0014549 907.4955033147121 77.263 0.26791 77.313 77.173 77.441 0.050102 21 10 3 0 0 0 0.35156 1 42627 42627 49.669 6.7009 1 2736200 34648 3861 23147 23580 40690 40690 685 0.031491122822103534 LPFMATVL 8 Oxidation (M) _LPFM(Oxidation (M))ATVL_ LPFM(1)ATVL LPFM(60)ATVL 0 0 1 ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 907.4986572265625 1 907.495752 906.488476 0.54222 0.00049206 0.38482 0.00034923 0.92704 0.00084129 907.4956155334843 78.085 0.28893 78.137 77.987 78.276 0.052452 18 11 2 0 0 0 0.2655 1 43118 43118 59.795 16.827 1 2338500 34649 3861 23147 23580 40691 40691 685 0.031491122822103534 LPFMATVL 8 Unmodified _LPFMATVL_ 0 0 0 ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF ENSG00000125534|ENST00000370179|PPDPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2541198730469 2 446.254057 890.493561 0.99949 0.00044603 0.39693 0.00017713 1.3964 0.00062316 446.25425512940154 100.52 0.17693 94.348 94.241 94.418 -6.1757 24 10 3 0 0 0 0.359 1 67245 67245 48.848 3.0979 1 58477000 34650 3861 23147 23581 40692 40692 0.043934161448191844 LPFMEDLRQY 10 Unmodified _LPFMEDLRQY_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.3244018554688 2 656.323731 1310.63291 NaN NaN NaN NaN NaN NaN NaN 71.547 1 71.07 70.57 71.57 -0.47682 0 0 0 0.36315 1 39157 39157 33.445 16.332 1 34651 1266 23148 23582 40693 40693 -0.009982910284634272 LPFMEDLRQY 10 Unmodified _LPFMEDLRQY_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.3236694335938 2 656.323731 1310.63291 NaN NaN NaN NaN NaN NaN NaN 70.986 1 71.022 70.522 71.522 0.035515 0 0 0 0.48009 1 39079 39079 27.223 0.95509 1 34652 1266 23148 23582 40694 40694 -0.009982910284634272 LPFMEDLRQY 10 Unmodified _LPFMEDLRQY_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.324462890625 2 656.323731 1310.63291 0.74647 0.00048992 0.19561 0.00012838 0.94208 0.00061831 656.3240492531185 84.026 0.95448 77.851 77.27 78.224 -6.1757 124 51 3 0 0 0 5.9542E-11 4 55126 54995;55126;55255;55403 160.69 109.06 1 30346000 34653 1266 23148 23582 40695;40696;40697;40698 40696 -0.009982910284634272 LPFMEDLRQY 10 Unmodified _LPFMEDLRQY_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20221201_MKP_PDAC_01 4 656.3242797851562 2 656.323731 1310.63291 NaN NaN NaN NaN NaN NaN NaN 84.436 1 78.26 77.76 78.76 -6.1757 0 0 0 0.57388 1 55548 55548 22.658 5.5452 1 34654 1266 23148 23582 40699 40699 -0.009982910284634272 LPFMEDLRQY 10 Oxidation (M) _LPFM(Oxidation (M))EDLRQY_ LPFM(1)EDLRQY LPFM(46)EDLRQY 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20221201_MKP_PDAC_01 4 664.323974609375 2 664.321188 1326.62782 NaN NaN NaN NaN NaN NaN NaN 65.078 1 58.902 58.402 59.402 -6.1757 0 0 0 0.16751 1 42219 42219 45.74 24.203 1 34655 1266 23148 23583 40700 40700 212 -0.022425948910949955 LPFMIVFLL 9 Unmodified _LPFMIVFLL_ 0 0 0 ENSG00000121318|ENST00000240619|TAS2R10 ENSG00000121318|ENST00000240619|TAS2R10 ENSG00000121318|ENST00000240619|TAS2R10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7333374023438 2 546.829932 1091.64531 0.78987 0.00043193 2.8745 0.0015719 3.6644 0.0020038 546.8323642762947 91.417 0.18534 85.242 85.145 85.331 -6.1757 13 9 2 0 0 0 0.061637 1 60451 60451 28.173 0 1 5045900 34656 3578 23149 23584 40701 40701 0.10315397172553276 LPFNAQRIISL 11 Unmodified _LPFNAQRIISL_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3782958984375 2 636.377155 1270.73976 0.22065 0.00014042 -0.3779 -0.00024049 -0.15724 -0.00010007 636.8776645675558 79.446 0.32858 79.501 79.391 79.72 0.05497 24 12 3 0 0 0 0.06459 1 43944 43944 47.732 25.074 1 2629800 34657 6445 23150 23585 40702 40702 0.11521627248225741 LPFNAQRIISL 11 Unmodified _LPFNAQRIISL_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3770751953125 2 636.377155 1270.73976 0.97839 0.00062263 -1.1394 -0.00072506 -0.16097 -0.00010244 636.3764067453263 96.122 0.29906 89.946 89.785 90.084 -6.1757 33 17 3 0 0 0 0.00028183 1 63755 63755 91.085 52.909 1 18461000 34658 6445 23150 23585 40703 40703 0.11521627248225741 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.5575256347656 3 468.557853 1402.65173 0.11872 5.5627E-05 -0.10945 -5.1284E-05 0.0092691 4.3431E-06 468.5577825684512 41.846 0.42274 41.846 41.645 42.068 0 93 21 6 0 0 0 0.02135 2 22536 22536;22651 47.724 36.825 1 163670000 34659 10010 23151 23586 40704;40705 40704 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.3323364257812 2 702.333141 1402.65173 -0.33573 -0.00023579 0.096392 6.7699E-05 -0.23933 -0.00016809 702.3330440849642 41.842 0.28259 41.842 41.709 41.992 0 35 14 3 0 0 0 0.0062377 1 22600 22600 73.196 44.115 1 7803000 34660 10010 23151 23586 40706 40706 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.5571899414062 3 468.557853 1402.65173 -0.12715 -5.9575E-05 -0.19227 -9.0088E-05 -0.31941 -0.00014966 468.5577152689689 42.192 0.26077 41.886 41.701 41.961 -0.30682 44 12 5 0 0 0 0.012739 2 22335 22335;22440 54.259 39.302 1 85349000 34661 10010 23151 23586 40707;40708 40707 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.8916320800781 3 468.557853 1402.65173 -0.2002 -9.3804E-05 -0.1562 -7.3189E-05 -0.3564 -0.00016699 468.89199260557024 41.899 0.22681 41.89 41.755 41.981 -0.0088196 21 10 3 0 0 0 0.15252 1 22408 22408 30.414 22.937 1 5955000 34662 10010 23151 23586 40709 40709 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.5578308105469 3 468.557853 1402.65173 0.77982 0.00036539 0.076693 3.5935E-05 0.85651 0.00040132 468.55787427077246 47.202 0.71946 42.122 41.805 42.524 -5.0805 177 54 5 0 0 0 0.0011228 3 29088 29088;29220;29344 84.06 64.434 1 410330000 34663 10010 23151 23586 40710;40711;40712 40710 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 702.8347778320312 2 702.333141 1402.65173 0.47505 0.00033365 -0.52227 -0.00036681 -0.047215 -3.316E-05 702.3331509339874 47.172 0.4722 42.092 41.894 42.366 -5.0805 80 34 3 0 0 0 2.4991E-15 2 29271 29157;29271 139.38 95.52 1 42293000 34664 10010 23151 23586 40713;40714 40714 -0.03349038133023896 LPFPDETHERY 11 Unmodified _LPFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MSMS AL20221201_MKP_PDAC_01 4 702.3340454101562 2 702.333141 1402.65173 NaN NaN NaN NaN NaN NaN NaN 47.401 1 42.167 41.667 42.667 -5.2339 0 0 0 0.12887 1 29412 29412 46.022 23.286 1 34665 10010 23151 23586 40715 40715 -0.03349038133023896 LPFPFPSKL 9 Unmodified _LPFPFPSKL_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENST00000564306.5_1_15:65892084-65903486:-|nuORF ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.30810546875 2 523.307678 1044.6008 1.5683 0.0008207 -0.45339 -0.00023726 1.1149 0.00058344 523.307549069853 98.197 0.1484 92.021 91.924 92.072 -6.1757 17 9 2 0 0 0 0.011291 1 65101 65101 76.825 27.27 1 25011000 34666 5068 23152 23587 40716 40716 0.08028709350696772 LPFPGRSASY 10 Unmodified _LPFPGRSASY_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7852172851562 2 547.785099 1093.55564 0.076456 4.1882E-05 -0.51339 -0.00028123 -0.43694 -0.00023935 547.7849040645044 45.434 0.37556 45.406 45.226 45.601 -0.028011 30 19 2 0 0 0 0.025861 2 24371 24371;24480 70.332 11.653 1 18462000 34667 2541 23153 23588 40717;40718 40717 0.012608588175226032 LPFPIIQQY 9 Unmodified _LPFPIIQQY_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8155517578125 2 559.815867 1117.61718 0.63778 0.00035704 -0.40322 -0.00022573 0.23456 0.00013131 559.8156129938914 89.83 0.31524 89.328 89.149 89.464 -0.50171 38 15 3 0 0 0 0.040472 2 49146 49053;49146 49.669 35.087 1 1309100 34668 809 23154 23589 40719;40720 40720 0.06307790516802925 LPFPIIQQY 9 Unmodified _LPFPIIQQY_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8173217773438 2 559.815867 1117.61718 0.66368 0.00037154 0.50903 0.00028497 1.1727 0.0006565 559.8161489273214 89.25 0.38061 89.298 89.129 89.509 0.047852 33 13 3 0 0 0 0.027803 2 49610 49610;49718 56.541 30.23 1 50939000 34669 809 23154 23589 40721;40722 40721 0.06307790516802925 LPFPIIQQY 9 Unmodified _LPFPIIQQY_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MSMS AL20221201_MKP_PDAC_01 4 559.81640625 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 98.822 1 92.646 92.146 93.146 -6.1757 0 0 0 0.075639 1 65623 65623 49.669 23.328 1 34670 809 23154 23589 40723 40723 0.06307790516802925 LPFPKDASL 9 Unmodified _LPFPKDASL_ 0 0 0 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2796020507812 2 494.279118 986.543683 0.18061 8.9273E-05 0.58554 0.00028942 0.76616 0.00037869 494.2796994190935 54.964 0.27389 54.964 54.852 55.126 0 18 11 2 0 0 0 0.11784 1 30529 30529 31.268 0.6318 1 2241600 34671 10118 23155 23590 40724 40724 0.04987242074309961 LPFPKDASL 9 Unmodified _LPFPKDASL_ 0 0 0 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2796630859375 2 494.279118 986.543683 0.63914 0.00031591 -0.14411 -7.1232E-05 0.49503 0.00024468 494.27898483308707 55.52 0.39709 55.042 54.841 55.238 -0.47798 58 18 4 0 0 0 0.032796 1 30060 30060 53.833 11.738 1 27710000 34672 10118 23155 23590 40725 40725 0.04987242074309961 LPFPKDASL 9 Unmodified _LPFPKDASL_ 0 0 0 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2794494628906 2 494.279118 986.543683 0.37201 0.00018388 1.3011 0.00064309 1.6731 0.00082697 494.27922807979667 55.171 0.27921 55.103 54.999 55.278 -0.068737 31 13 3 0 0 0 0.11784 1 30006 30006 31.268 2.1868 1 3588500 34673 10118 23155 23590 40726 40726 0.04987242074309961 LPFPKDASL 9 Unmodified _LPFPKDASL_ 0 0 0 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2790222167969 2 494.279118 986.543683 1.1401 0.00056352 -0.83442 -0.00041244 0.30567 0.00015109 494.2789622061346 61.471 0.60641 55.323 55.076 55.682 -6.1478 79 30 3 0 0 0 0.025842 1 39512 39512 57.722 0.25064 1 127250000 34674 10118 23155 23590 40727 40727 0.04987242074309961 LPFPKDASL 9 Unmodified _LPFPKDASL_ 0 0 0 nc|nan|Q6UWU4-2|C6orf89;ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-3|C6orf89 nc|nan|Q6UWU4-2|C6orf89 nc|nan|Q6UWU4-2|C6orf89 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 494.279118 986.543683 1.1401 0.00056352 -0.83442 -0.00041244 0.30567 0.00015109 494.2789622061346 61.471 0.60641 55.323 55.076 55.682 -6.1478 0.21522 -0.00065779 NaN 57.722 79 30 3 NaN NaN NaN NaN 0 NaN NaN 0 127250000 34675 10118 23155 23590 0.04987242074309961 LPFPNPERNF 10 Unmodified _LPFPNPERNF_ 0 0 0 ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.814208984375 2 615.81693 1229.61931 0.56933 0.0003506 -0.71397 -0.00043968 -0.14464 -8.9073E-05 615.8166784616192 60.39 0.36229 60.347 60.152 60.515 -0.04351 33 17 2 0 0 0 0.022967 2 32909 32909;33007 72.968 38.866 1 14552000 34676 1927 23156 23591 40728;40729 40728 0.01368219254595715 LPFPNPERNF 10 Unmodified _LPFPNPERNF_ 0 0 0 ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP ENSG00000101189|ENST00000370487|MRGBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3214721679688 2 615.81693 1229.61931 0.47521 0.00029264 1.4287 0.00087983 1.9039 0.0011725 616.3199345904479 68.014 0.72305 61.839 61.288 62.011 -6.1757 75 41 2 0 0 0 0.0034079 2 44294 44294;44436 103.35 17.712 1 86860000 34677 1927 23156 23591 40730;40731 40730 0.01368219254595715 LPFPPGDRVTF 11 Unmodified _LPFPPGDRVTF_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MSMS AL20221201_MKP_PDAC_01 4 623.3350219726562 2 623.334956 1244.65536 NaN NaN NaN NaN NaN NaN NaN 79.528 1 73.352 72.852 73.852 -6.1757 0 0 0 0.10035 1 52119 52119 53.317 13.367 1 34678 7112 23157 23592 40732 40732 0.0428167643146935 LPFPPGDRVTF 11 Unmodified _LPFPPGDRVTF_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MSMS AL20221201_MKP_PDAC_01 4 623.3342895507812 2 623.334956 1244.65536 NaN NaN NaN NaN NaN NaN NaN 80.199 1 74.024 73.524 74.524 -6.1757 0 0 0 0.34959 1 52608 52608 43.982 0.20946 1 34679 7112 23157 23592 40733 40733 0.0428167643146935 LPFPPGDRVTF 11 Unmodified _LPFPPGDRVTF_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MSMS AL20221201_MKP_PDAC_01 4 623.3348388671875 2 623.334956 1244.65536 NaN NaN NaN NaN NaN NaN NaN 80.398 1 74.222 73.722 74.722 -6.1757 0 0 0 0.17711 1 52749 52749 57.249 30.365 1 34680 7112 23157 23592 40734 40734 0.0428167643146935 LPFPPGDRVTF 11 Unmodified _LPFPPGDRVTF_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 623.813232421875 2 623.334956 1244.65536 1.0895 0.0006791 1.1214 0.00069903 2.2109 0.0013781 623.3348536028699 79.214 0.12775 73.039 72.967 73.095 -6.1757 10 6 2 0 0 0 0.24549 1 51875 51875 29.437 5.4166 1 6041600 34681 7112 23157 23592 40735 40735 0.0428167643146935 LPFPQSPAF 9 Unmodified _LPFPQSPAF_ 0 0 0 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.266357421875 2 502.26601 1002.51747 0.14445 7.2554E-05 0.63111 0.00031698 0.77556 0.00038954 502.2662875644656 76.714 0.34527 76.764 76.613 76.959 0.05011 30 14 3 0 0 0 0.06187 1 42338 42338 42.095 13.013 1 4899900 34682 4025 23158 23593 40736 40736 0.016309729028421316 LPFPQSPAF 9 Unmodified _LPFPQSPAF_ 0 0 0 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 MSMS AL20221201_MKP_PDAC_01 4 502.2652587890625 2 502.26601 1002.51747 NaN NaN NaN NaN NaN NaN NaN 84.347 1 78.172 77.672 78.672 -6.1757 0 0 0 0.23581 1 55486 55486 28.487 4.2769 1 34683 4025 23158 23593 40737 40737 0.016309729028421316 LPFPSNITL 9 Unmodified _LPFPSNITL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2879333496094 2 501.286943 1000.55933 0.41092 0.00020599 1.8755 0.00094018 2.2865 0.0011462 501.28787653093974 98.782 0.23265 92.606 92.427 92.66 -6.1757 27 17 2 0 0 0 0.0088975 1 65510 65510 104.8 23.186 1 48464000 34684 4151 23159 23594 40738 40738 0.059075285913763764 LPFPYAKSLK 10 Unmodified _LPFPYAKSLK_ 0 0 0 REV__nc|ENSG00000089335|Q9NR11|ZNF302 REV__nc|ENSG00000089335|Q9NR11|ZNF302 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3447265625 2 582.344792 1162.67503 0.76307 0.00044437 -0.70114 -0.00040831 0.061921 3.6059E-05 582.344266653804 61.714 0.64548 61.681 61.514 62.16 -0.032787 115 32 5 0 0 0 0.42143 1 33849 33849 20.415 0 1 439900000 + 34685 29525 23160 23595 40739 40739 0.10020052442200722 LPFPYAKSLK 10 Unmodified _LPFPYAKSLK_ 0 0 0 REV__nc|ENSG00000089335|Q9NR11|ZNF302 REV__nc|ENSG00000089335|Q9NR11|ZNF302 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3441162109375 2 582.344792 1162.67503 1.1933 0.0006949 -0.54115 -0.00031513 0.65214 0.00037977 582.3444106786512 90.613 0.81668 84.437 84.057 84.873 -6.1757 201 48 5 0 0 0 0.42143 2 59647 59647;59910 20.415 20.415 1 803210000 + 34686 29525 23160 23595 40740;40741 40740 0.10020052442200722 LPFQFAHHL 9 Unmodified _LPFQFAHHL_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2;ENST00000512600.1_1_5:112919975-112927944:+|nuORF ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.5346984863281 3 370.534543 1108.5818 0.26618 9.8628E-05 1.7871 0.00066219 2.0533 0.00076082 370.53464111728266 54.735 0.30087 54.668 54.523 54.824 -0.066936 46 14 4 0 0 0 0.045537 1 29736 29736 41.84 25.691 1 13725000 34687 678 23161 23596 40742 40742 0.031851727796492924 LPFQFAHHL 9 Unmodified _LPFQFAHHL_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2;ENST00000512600.1_1_5:112919975-112927944:+|nuORF ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.7359313964844 3 370.534543 1108.5818 1.3155 0.00048746 -0.3494 -0.00012946 0.96615 0.00035799 370.5343450935628 80.78 0.3652 74.604 74.462 74.827 -6.1757 29 19 2 0 0 0 0.21242 1 53073 53073 2.9952 0.26005 1 13160000 34688 678 23161 23596 40743 40743 0.031851727796492924 LPFQGAEVL 9 Unmodified _LPFQGAEVL_ 0 0 0 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 ENSG00000121057|ENST00000337714|AKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2721557617188 2 487.271293 972.528032 0.85275 0.00041552 -0.71612 -0.00034895 0.13662 6.6573E-05 487.2709179709435 74.398 0.2484 73.923 73.794 74.042 -0.47588 20 10 2 0 0 0 0.30562 1 40700 40700 16.942 3.4344 1 1408300 34689 3562 23162 23597 40744 40744 0.04066955557277652 LPFQGVKIS 9 Unmodified _LPFQGVKIS_ 0 0 0 REV__nc|ENSG00000184313|Q68CQ1-4|MROH7 REV__nc|ENSG00000184313|Q68CQ1-4|MROH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.79638671875 2 494.794935 987.575317 1.0743 0.00053155 0.67373 0.00033336 1.748 0.00086491 494.7951672195149 63.609 0.73723 57.434 57.143 57.88 -6.1757 101 41 3 0 0 0 0.07916 1 41439 41439 37.974 1.847 1 205740000 + 34690 23412 23163 23598 40745 40745 0.08103234828286077 LPFQHHGY 8 Unmodified _LPFQHHGY_ 0 0 0 nc|ENSG00000204179|Q4JDL3-14|PTPN20;nc|ENSG00000204179|Q4JDL3-12|PTPN20;nc|ENSG00000204179|Q4JDL3-8|PTPN20;nc|ENSG00000204179|Q4JDL3-7|PTPN20 nc|ENSG00000204179|Q4JDL3-14|PTPN20 nc|ENSG00000204179|Q4JDL3-14|PTPN20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2425231933594 2 499.745776 997.477 0.5218 0.00026077 0.91743 0.00045848 1.4392 0.00071925 499.74635403807457 59.445 0.55095 59.445 59.004 59.555 0 78 23 6 0 0 0 0.80044 1 32941 32941 6.3541 1.1234 1 203640000 34691 16502 23164 23599 40746 40746 -0.021839486969156496 LPFQSVGF 8 Unmodified _LPFQSVGF_ 0 0 0 REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 894.4740600585938 1 894.47198 893.464704 0.30952 0.00027686 0.24858 0.00022235 0.5581 0.00049921 894.4731753886964 100.7 0.097382 94.522 94.459 94.556 -6.1757 9 6 2 0 0 0 0.21098 1 67397 67397 68.081 6.7232 1 12025000 + 34692 26832 23165 23600 40747 40747 0.013710148400491562 LPFQSVGF 8 Unmodified _LPFQSVGF_ 0 0 0 REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF REV__ENST00000420353.6_1_12:53910483-53910921:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7397766113281 2 447.739628 893.464704 0.93968 0.00042073 -0.4649 -0.00020815 0.47478 0.00021258 447.73960155717026 100.69 0.12509 94.513 94.459 94.584 -6.1757 13 8 2 0 0 0 0.42423 1 67418 67418 42.095 11.87 1 13546000 + 34693 26832 23165 23600 40748 40748 0.013710148400491562 LPFRFTYY 8 Unmodified _LPFRFTYY_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.78857421875 2 553.78711 1105.55967 1.1123 0.00061599 0.97879 0.00054204 2.0911 0.001158 553.7876721328274 71.275 0.44254 71.314 71.157 71.599 0.039024 34 19 2 0 0 0 0.50364 1 39239 39239 34.402 18.253 1 9609000 34694 2945 23166 23601 40749 40749 0.011109483112250018 LPFRGDEGIF 10 Unmodified _LPFRGDEGIF_ 0 0 0 ENST00000483560.1_1_X:70279478-70282733:-|nuORF;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;nc|ENSG00000147164|Q9UMY4-1|SNX12 ENST00000483560.1_1_X:70279478-70282733:-|nuORF ENST00000483560.1_1_X:70279478-70282733:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7998046875 2 575.798206 1149.58186 0.16794 9.6698E-05 0.018473 1.0637E-05 0.18641 0.00010733 575.7985357518113 65.772 0.28422 65.288 65.101 65.385 -0.48428 26 11 3 0 0 0 0.20195 1 35893 35893 33.445 7.1768 1 3152500 34695 5829 23167 23602 40750 40750 0.013051279889850775 LPFRRCVTRLL 11 Unmodified _LPFRRCVTRLL_ 0 0 0 ENST00000424094.6_1_20:57394171-57417508:-|nuORF ENST00000424094.6_1_20:57394171-57417508:-|nuORF ENST00000424094.6_1_20:57394171-57417508:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 687.4151000976562 2 687.413549 1372.81254 NaN NaN NaN NaN NaN NaN NaN 82.396 1 82.458 81.958 82.958 0.062004 0 0 0 0.94144 1 45582 45582 1.4819 0 1 34696 13140 23168 23603 40751 40751 0.1410505777000708 LPFRVGVPF 9 Unmodified _LPFRVGVPF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.3076782226562 2 516.30547 1030.59639 1.2954 0.00066885 1.3428 0.00069327 2.6382 0.0013621 516.3059964232223 97.158 0.20625 90.983 90.911 91.117 -6.1757 19 11 2 0 0 0 0.026094 1 64402 64402 57.471 19.32 1 18289000 34697 1980 23169 23604 40752 40752 0.08231244927810621 LPFSAANSSF 10 Unmodified _LPFSAANSSF_ 0 0 0 ENST00000536984.6_2_18:63418077-63476947:+|nuORF ENST00000536984.6_2_18:63418077-63476947:+|nuORF ENST00000536984.6_2_18:63418077-63476947:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7927856445312 2 520.756007 1039.49746 -0.31269 -0.00016283 -0.57868 -0.00030135 -0.89136 -0.00046418 520.7559314749544 61.337 0.10346 60.847 60.798 60.901 -0.48932 6 4 2 0 0 0 0.23566 1 33435 33435 7.2892 1.5288 1 651840 34698 14983 23170 23605 40753 40753 -0.020708228277726448 LPFSAGPTDVL 11 Unmodified _LPFSAGPTDVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.8010864257812 2 558.800414 1115.58628 1.1704 0.00065403 0.89962 0.00050271 2.07 0.0011567 558.8003545162549 79.888 0.66613 79.399 79.141 79.807 -0.48933 77 27 4 0 0 0 0.00081493 2 43768 43669;43768 85.272 54.635 1 9679100 34699 2100 23171 23606 40754;40755 40755 0.033105924118899566 LPFSAGPTDVL 11 Unmodified _LPFSAGPTDVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.304931640625 2 558.800414 1115.58628 1.3243 0.00074003 0.44825 0.00025048 1.7726 0.00099052 558.8005465299186 87.764 0.5728 81.588 81.296 81.869 -6.1757 74 31 3 0 0 0 4.5763E-06 3 57783 57783;57902;58024 96.285 61.353 1 38865000 34700 2100 23171 23606 40756;40757;40758 40756 0.033105924118899566 LPFSAGSLLVY 11 Unmodified _LPFSAGSLLVY_ 0 0 0 nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43;ENST00000488158.5_1_X:118533366-118560222:+|nuORF nc|ENSG00000077713|Q8WUT9-2|SLC25A43 nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8268432617188 2 583.826432 1165.63831 2.7379 0.0015984 -2.0486 -0.001196 0.68926 0.00040241 583.8253312483276 96.562 0.44222 96.555 96.282 96.724 -0.007019 23 15 2 0 0 0 0.054439 1 53630 53630 49.933 31.787 1 2681500 34701 1225 23172 23607 40759 40759 0.06211755825665932 LPFSAGSLLVY 11 Unmodified _LPFSAGSLLVY_ 0 0 0 nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43;ENST00000488158.5_1_X:118533366-118560222:+|nuORF nc|ENSG00000077713|Q8WUT9-2|SLC25A43 nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8265991210938 2 583.826432 1165.63831 1.0888 0.00063569 0.56304 0.00032872 1.6519 0.00096441 584.3282680227856 100.42 0.14282 94.241 94.187 94.33 -6.1757 15 8 2 0 0 0 0.00081493 1 67155 67155 85.272 45.322 1 31569000 34702 1225 23172 23607 40760 40760 0.06211755825665932 LPFSDPAHAL 10 Unmodified _LPFSDPAHAL_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2796630859375 2 534.279649 1066.54475 0.39264 0.00020978 -0.47494 -0.00025375 -0.082297 -4.397E-05 534.2796498984621 59.159 0.33355 59.159 59.045 59.379 0 21 13 2 0 0 0 0.074936 1 32956 32956 52.268 29.532 1 5965600 34703 6856 23173 23608 40761 40761 0.014134564432197294 LPFSDPAHAL 10 Unmodified _LPFSDPAHAL_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.279541015625 2 534.279649 1066.54475 0.26311 0.00014057 1.2689 0.00067792 1.532 0.0008185 534.2802371301971 59.715 0.4039 59.224 59.007 59.411 -0.49079 35 19 2 0 0 0 0.074936 2 32436 32436;32542 52.268 33.011 1 39561000 34704 6856 23173 23608 40762;40763 40762 0.014134564432197294 LPFSDPAHAL 10 Unmodified _LPFSDPAHAL_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2796020507812 2 534.279649 1066.54475 0.49091 0.00026228 0.97009 0.0005183 1.461 0.00078058 534.2800766177296 65.813 0.77966 59.637 59.398 60.177 -6.1757 108 45 3 0 0 0 0.024981 1 42704 42704 71.134 31.176 1 88944000 34705 6856 23173 23608 40764 40764 0.014134564432197294 LPFSDPAHAL 10 Unmodified _LPFSDPAHAL_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.279649 1066.54475 0.2897 0.00015478 0.22342 0.00011937 0.51312 0.00027415 534.7829257612789 59.542 0.15433 59.489 59.399 59.554 -0.053062 0.11142 -0.00067651 NaN 71.134 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1896900 34706 6856 23173 23608 0.014134564432197294 LPFSDQVVL 9 Unmodified _LPFSDQVVL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.285400390625 2 509.2844 1016.55425 0.50616 0.00025778 0.73296 0.00037329 1.2391 0.00063107 509.2846956634269 81.324 0.39073 80.831 80.7 81.091 -0.49247 42 17 3 0 0 0 0.016184 2 44584 44489;44584 67.344 27.387 1 3297300 34707 3672 23174 23609 40765;40766 40766 0.04663224728756177 LPFSDQVVL 9 Unmodified _LPFSDQVVL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.283935546875 2 509.2844 1016.55425 0.9858 0.00050205 0.027429 1.3969E-05 1.0132 0.00051602 509.2843698392739 89.011 0.47941 82.835 82.617 83.096 -6.1757 45 26 2 0 0 0 0.095405 1 58644 58644 34.102 10.954 1 15739000 34708 3672 23174 23609 40767 40767 0.04663224728756177 LPFSIPVHF 9 Unmodified _LPFSIPVHF_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000152527|ENST00000282406|PLEKHH2;ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000152527|ENST00000282406|PLEKHH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7980346679688 2 528.797478 1055.5804 0.74047 0.00039156 -0.99757 -0.00052751 -0.2571 -0.00013595 528.7972809213096 90.83 0.29141 90.866 90.692 90.983 0.036499 23 10 3 0 0 0 0.009483 1 50523 50523 106.85 59.925 1 14502000 34709 6195;764 23175 23610 40768 40768 0.05483538690896239 LPFSIPVHF 9 Unmodified _LPFSIPVHF_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000152527|ENST00000282406|PLEKHH2;ENSG00000054690|ENST00000329153|PLEKHH1 ENSG00000152527|ENST00000282406|PLEKHH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7979736328125 2 528.797478 1055.5804 0.92931 0.00049142 -0.020104 -1.0631E-05 0.90921 0.00048079 528.7973940221876 99.226 0.17086 93.051 92.957 93.128 -6.1757 21 9 3 0 0 0 0.011968 1 66018 66018 98.807 45.232 1 161400000 34710 6195;764 23175 23610 40769 40769 0.05483538690896239 LPFSLTNNDLY 11 Unmodified _LPFSLTNNDLY_ 0 0 0 ENST00000548022.1_1_12:42717790-42719777:-|nuORF;ENSG00000139168|ENST00000266529|ZCRB1 ENST00000548022.1_1_12:42717790-42719777:-|nuORF ENST00000548022.1_1_12:42717790-42719777:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.82763671875 2 648.82716 1295.63977 1.005 0.00065206 0.3263 0.00021171 1.3313 0.00086377 648.8269073074296 93.934 1.1268 87.758 87.318 88.445 -6.1757 214 65 4 0 0 0 0.37603 1 62089 62089 36.127 17.981 1 101800000 34711 5130 23176 23611 40770 40770 0.0037734512375209306 LPFSPEFSEF 10 Unmodified _LPFSPEFSEF_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.28564453125 2 600.284597 1198.55464 0.50855 0.00030527 0.1785 0.00010715 0.68705 0.00041242 600.2846114906481 86.835 0.95689 86.332 85.699 86.656 -0.50318 85 39 3 0 0 0 0.68719 1 47425 47425 4.3292 0.38484 1 2808000 34712 816 23177 23612 40771 40771 -0.036694003420507215 LPFSPEFSEF 10 Unmodified _LPFSPEFSEF_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2859497070312 2 600.284597 1198.55464 0.43556 0.00026146 0.4985 0.00029924 0.93407 0.00056071 600.2849008756509 93.467 0.8763 93.009 92.522 93.398 -0.4574 73 40 2 0 0 0 0.70951 1 51104 51104 1.8442 0.36234 1 487480 34713 816 23177 23612 40772 40772 -0.036694003420507215 LPFSPQAHSY 10 Unmodified _LPFSPQAHSY_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7830810546875 2 573.782556 1145.55056 1.2181 0.0006989 -0.45053 -0.0002585 0.76752 0.00044039 573.7824854482172 50.28 0.34191 44.741 44.546 44.888 -5.5391 35 21 2 0 0 0 0.012821 1 31532 31532 82.529 46.063 1 14193000 34714 7582 23178 23613 40773 40773 -0.016394450450889053 LPFSQPKVTEL 11 Unmodified _LPFSQPKVTEL_ 0 0 0 nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8563232421875 2 629.855721 1257.69689 NaN NaN NaN NaN NaN NaN NaN 60.892 1 60.403 59.903 60.903 -0.48932 0 0 0 0.70606 1 33163 33163 16.566 1.3174 1 34715 10453 23179 23614 40774 40774 0.07834812400164992 LPFSQPKVTEL 11 Unmodified _LPFSQPKVTEL_ 0 0 0 nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 MSMS AL20221201_MKP_PDAC_01 4 629.8557739257812 2 629.855721 1257.69689 NaN NaN NaN NaN NaN NaN NaN 68.367 1 62.192 61.692 62.692 -6.1757 0 0 0 3.1201E-07 1 44619 44619 97.741 44.337 1 34716 10453 23179 23614 40775 40775 0.07834812400164992 LPFSSHTY 8 Unmodified _LPFSSHTY_ 0 0 0 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2322692871094 2 476.232168 950.449782 0.60637 0.00028877 -0.049541 -2.3593E-05 0.55683 0.00026518 476.2320928418536 40.876 0.42333 40.573 40.254 40.678 -0.30304 50 20 3 0 0 0 0.15234 1 21627 21627 86.121 25.732 1 10964000 34717 8791 23180 23615 40776 40776 -0.02742477027948098 LPFSSHTY 8 Unmodified _LPFSSHTY_ 0 0 0 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2325744628906 2 476.232168 950.449782 0.56781 0.00027041 0.13681 6.5153E-05 0.70462 0.00033556 476.232268471477 45.456 0.6843 40.501 40.299 40.983 -4.9549 125 46 3 0 0 0 0.18881 1 28137 28137 74.396 29.989 1 286600000 34718 8791 23180 23615 40777 40777 -0.02742477027948098 LPFSSMPTAY 10 Oxidation (M) _LPFSSM(Oxidation (M))PTAY_ LPFSSM(1)PTAY LPFSSM(55)PTAY 0 0 1 nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D nc|ENSG00000116604|Q14814-6|MEF2D nc|ENSG00000116604|Q14814-6|MEF2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.26513671875 2 565.26535 1128.51615 0.65269 0.00036894 0.081678 4.617E-05 0.73437 0.00041511 565.264735540249 57.441 0.44488 56.951 56.622 57.066 -0.48974 61 20 4 0 0 0 0.063761 2 31209 31106;31209 54.774 34.32 1 7814200 34719 3232 23181 23616 40778;40779 40779 579 -0.0429702924823232 LPFSSMPTAY 10 Unmodified _LPFSSMPTAY_ 0 0 0 nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D nc|ENSG00000116604|Q14814-6|MEF2D nc|ENSG00000116604|Q14814-6|MEF2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.268310546875 2 557.267893 1112.52123 1.389 0.00077407 -2.5092 -0.0013983 -1.1202 -0.00062423 557.2667731748144 79.417 1.3218 73.241 72.5 73.822 -6.1757 206 77 4 0 0 0 0.031389 3 51869 51702;51745;51869 67.344 21.323 1 113940000 34720 3232 23181 23617 40780;40781;40782 40782 -0.03052725385600752 LPFTIVDAL 9 Unmodified _LPFTIVDAL_ 0 0 0 REV__ENSG00000109424|ENST00000262999|UCP1 REV__ENSG00000109424|ENST00000262999|UCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7895812988281 2 494.789318 987.564084 0.53317 0.00026381 0.43085 0.00021318 0.96402 0.00047699 494.7893467248085 95.131 0.33855 94.763 94.541 94.88 -0.36815 38 17 3 0 0 0 0.3554 1 51894 51894 14.582 1.0738 1 1491500 + 34721 18655 23182 23618 40783 40783 0.06980412734139918 LPFTLYFQFWD 11 Unmodified _LPFTLYFQFWD_ 0 0 0 REV__ENSG00000130962|ENST00000378628|PRRG1 REV__ENSG00000130962|ENST00000378628|PRRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 738.8648071289062 2 738.863546 1475.71254 0.7672 0.00056685 -0.11127 -8.2211E-05 0.65593 0.00048464 738.8635079433844 90.16 0.33563 83.985 83.774 84.11 -6.1757 30 18 2 0 0 0 0.30985 1 59541 59541 26.268 5.8536 1 10963000 + 34722 19759 23183 23619 40784 40784 -0.006289010828368191 LPFTPLSY 8 Unmodified _LPFTPLSY_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 937.502197265625 1 937.502946 936.49567 0.4086 0.00038307 0.76474 0.00071695 1.1733 0.0011 937.5028582157694 79.916 0.17123 79.974 79.879 80.05 0.057587 10 6 2 0 0 0 0.094359 1 44160 44160 101.72 27.326 1 1453300 34723 5472 23184 23620 40785 40785 0.024881681542865408 LPFTPLSY 8 Unmodified _LPFTPLSY_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MSMS AL20221201_MKP_PDAC_01 4 469.25537109375 2 469.255111 936.49567 NaN NaN NaN NaN NaN NaN NaN 88.044 1 81.868 81.368 82.368 -6.1757 0 0 0 0.34053 1 58074 58074 59.795 16.827 1 34724 5472 23184 23620 40786 40786 0.024881681542865408 LPFTREIL 8 Unmodified _LPFTREIL_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|356|3|anti-sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|356|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7950744628906 2 494.794935 987.575317 0.48411 0.00023954 -0.24529 -0.00012137 0.23883 0.00011817 494.7948074456992 57.94 0.24834 57.45 57.35 57.598 -0.48974 27 11 3 0 0 0 0.36356 1 31480 31480 48.346 8.3885 1 4368800 + 34725 29367 23185 23621 40787 40787 0.08103234828286077 LPFTRNVPC 9 Unmodified _LPFTRNVPC_ 0 0 0 REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C REV__nc|ENSG00000095370|Q8N5H7-6|SH2D3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7766723632812 2 523.776219 1045.53789 0.78575 0.00041156 0.57512 0.00030123 1.3609 0.00071279 523.776371237504 65.769 0.46331 65.779 65.529 65.993 0.0095596 65 22 4 0 0 0 0.1773 1 36109 36109 25.399 1.3787 1 32819000 + 34726 17940 23186 23622 40788 40788 0.016938202910068867 LPFVAEFEEF 10 Unmodified _LPFVAEFEEF_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF ENSG00000090989|ENST00000381295|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.3020629882812 2 614.300247 1226.58594 1.4956 0.00091877 -1.433 -0.00088027 0.062682 3.8505E-05 614.2991731660061 100.92 0.1099 94.747 94.688 94.798 -6.1757 17 6 3 0 0 0 0.011274 1 67603 67603 85.357 54.088 1 29442000 34727 1574 23187 23623 40789 40789 -0.018288273079861028 LPFVLKAGY 9 Unmodified _LPFVLKAGY_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2;ENST00000468712.5_1_7:26766479-26894483:-|nuORF ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.3007202148438 2 504.299853 1006.58515 0.89993 0.00045383 -0.27925 -0.00014083 0.62068 0.00031301 504.29979102925745 65.723 0.3199 65.73 65.569 65.889 0.0073395 38 15 3 0 0 0 0.038285 1 36015 36015 50.855 18.738 1 10854000 34728 294 23188 23624 40790 40790 0.08212422833662458 LPFVPIKDLQM 11 Unmodified _LPFVPIKDLQM_ 0 0 0 ENST00000367241.3_1_6:153296752-153304655:-|nuORF ENST00000367241.3_1_6:153296752-153304655:-|nuORF ENST00000367241.3_1_6:153296752-153304655:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.8710327148438 2 650.870317 1299.72608 1.4878 0.00096836 1.966 0.0012796 3.4538 0.002248 650.8715893183979 98.231 0.18073 92.055 91.939 92.12 -6.1757 20 11 2 0 0 0 0.010729 1 65095 65095 67.081 40.197 1 22283000 34729 12229 23189 23625 40791 40791 0.08820633424761581 LPFVVMACCY 10 Unmodified _LPFVVMACCY_ 0 0 0 nc|ENSG00000173585|P51686-2|CCR9;ENSG00000173585|ENST00000357632|CCR9 nc|ENSG00000173585|P51686-2|CCR9 nc|ENSG00000173585|P51686-2|CCR9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2619018554688 2 573.263242 1144.51193 NaN NaN NaN NaN NaN NaN NaN 73.555 1 73.555 73.055 74.055 0 0 0 0 0.90096 1 40951 40951 7.9102 0 1 34730 8343 23190 23626 40792 40792 -0.05454533267152328 LPFYHSVI 8 Unmodified _LPFYHSVI_ 0 0 0 REV__ENSG00000121634|ENST00000369235|GJA8 REV__ENSG00000121634|ENST00000369235|GJA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2692565917969 2 488.268553 974.522553 0.22538 0.00011004 0.086981 4.247E-05 0.31236 0.00015251 488.26871770118856 41.412 0.61111 36.804 36.484 37.095 -4.6079 72 39 2 0 0 0 0.57408 1 24754 24754 28.173 5.4369 1 69346000 + 34731 19299 23191 23627 40793 40793 0.03427276765478382 LPGALGLVL 9 Unmodified _LPGALGLVL_ 0 0 0 REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.5556030273438 1 852.555316 851.54804 -0.062614 -5.3382E-05 0.57945 0.00049402 0.51684 0.00044063 852.5557409600324 87.621 0.52737 87.117 86.855 87.382 -0.50423 72 23 4 0 0 0 0.028712 2 47944 47944;48039 56.048 0 1 18367000 + 34732 26692 23192 23628 40794;40795 40794 0.11632751287891097 LPGALGLVL 9 Unmodified _LPGALGLVL_ 0 0 0 REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 852.5552978515625 1 852.555316 851.54804 0.039435 3.362E-05 0.13411 0.00011434 0.17355 0.00014796 852.5553516116927 87.017 0.31258 87.075 86.851 87.164 0.05822 19 14 2 0 0 0 0.028712 1 48304 48304 56.048 0 1 18306000 + 34733 26692 23192 23628 40796 40796 0.11632751287891097 LPGALGLVL 9 Unmodified _LPGALGLVL_ 0 0 0 REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 852.5538330078125 1 852.555316 851.54804 1.1818 0.0010075 0.10861 9.2594E-05 1.2904 0.0011001 852.5552426997465 98.031 0.9424 91.855 91.279 92.221 -6.1757 140 60 3 0 0 0 0.028712 2 64773 64773;65028 56.048 0 1 136100000 + 34734 26692 23192 23628 40797;40798 40797 0.11632751287891097 LPGALGLVL 9 Unmodified _LPGALGLVL_ 0 0 0 REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF REV__ENST00000409580.5_1_2:189157859-189158947:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.78173828125 2 426.781296 851.54804 1.4941 0.00063767 -0.17072 -7.286E-05 1.3234 0.00056481 426.7811681496702 98.06 0.69701 91.884 91.493 92.19 -6.1757 120 46 4 0 0 0 0.028712 1 65017 65017 56.048 0 1 53676000 + 34735 26692 23192 23628 40799 40799 0.11632751287891097 LPGALHSLLV 10 Unmodified _LPGALHSLLV_ 0 0 0 ENST00000600801.5_1_3:181417563-181457401:+|nuORF ENST00000600801.5_1_3:181417563-181457401:+|nuORF ENST00000600801.5_1_3:181417563-181457401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3172302246094 2 510.316035 1018.61752 1.1466 0.00058514 0.34102 0.00017403 1.4876 0.00075917 510.3161185539797 70.613 0.386 70.649 70.424 70.81 0.035515 32 17 2 0 0 0 0.013474 1 38830 38830 81.613 8.6451 1 3772300 34736 15803 23193 23629 40800 40800 0.10895210236674302 LPGALHSLLV 10 Unmodified _LPGALHSLLV_ 0 0 0 ENST00000600801.5_1_3:181417563-181457401:+|nuORF ENST00000600801.5_1_3:181417563-181457401:+|nuORF ENST00000600801.5_1_3:181417563-181457401:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.3155212402344 2 510.316035 1018.61752 NaN NaN NaN NaN NaN NaN NaN 86.652 1 80.476 79.976 80.976 -6.1757 0 0 0 0.023095 1 57126 57126 64.236 4.1624 1 34737 15803 23193 23629 40801 40801 0.10895210236674302 LPGALQETLKP 11 Unmodified _LPGALQETLKP_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-SECPEP AL20221201_MKP_PDAC_01 4 389.5381774902344 3 389.564168 1165.67067 0.47507 0.00018507 1.1026 0.00042954 1.5777 0.00061461 389.56453371657074 26.151 0.27775 23.2 23.003 23.281 -2.9511 26 16 2 0 0 0 0.30533 1 14299 14299 3.0723 0.57378 1 8457100 + 34738 17184 23194 23630 40802 40802 0.0944654322865972 LPGAPRFK 8 Unmodified _LPGAPRFK_ 0 0 0 REV__nc|ENSG00000174740|Q96DU9-2|PABPC5 REV__nc|ENSG00000174740|Q96DU9-2|PABPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2689819335938 2 443.268887 884.523222 0.47828 0.00021201 -0.21797 -9.6618E-05 0.26031 0.00011539 443.2687619053029 45.746 0.30399 45.718 45.601 45.905 -0.028011 32 14 3 0 0 0 0.5953 1 24576 24576 26.341 6.9023 1 9428700 + 34739 22813 23195 23631 40803 40803 0.07634116205190367 LPGAQPAP 8 Unmodified _LPGAQPAP_ 0 0 0 REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF REV__ENST00000361198.9_1_10:103874266-103874668:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 750.8286743164062 1 750.414465 749.407189 0.74326 0.00055775 -0.20066 -0.00015058 0.5426 0.00040717 750.4143081335071 42.805 0.34223 42.805 42.586 42.928 0 40 17 3 0 0 0 8.7369 1 23180 23180 52.693 0 1 9471000 + 34740 25916 23196 23632 40804 40804 0.022461726344772615 LPGCYPHSMSL 11 Unmodified _LPGCYPHSMSL_ 0 0 0 REV__ENSG00000160961|ENST00000292530|ZNF333 REV__ENSG00000160961|ENST00000292530|ZNF333 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2237243652344 3 402.187827 1203.54165 0.65055 0.00026164 -0.32256 -0.00012973 0.32799 0.00013191 402.1879383774509 64.452 0.36856 63.967 63.779 64.147 -0.48512 67 16 5 0 0 0 0.29947 1 35259 35259 3.0723 0 1 36473000 + 34741 21576 23197 23633 40805 40805 -0.051978779974433564 LPGDGDLLV 9 Unmodified _LPGDGDLLV_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7478637695312 2 449.74765 897.480748 0.98399 0.00044255 -0.31345 -0.00014097 0.67054 0.00030157 449.7472892371382 51.229 0.34605 51.229 51.085 51.431 0 30 15 3 0 0 0 0.2001 1 28244 28244 23.148 5.0134 1 4698700 34742 8879 23198 23634 40806 40806 0.02790676286292637 LPGDLGLCSSL 11 Unmodified _LPGDLGLCSSL_ 0 0 0 ENST00000556798.1_1_12:57627733-57627898:+|nuORF ENST00000556798.1_1_12:57627733-57627898:+|nuORF ENST00000556798.1_1_12:57627733-57627898:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 537.77783203125 2 537.778625 1073.5427 NaN NaN NaN NaN NaN NaN NaN 65.643 1 59.467 58.967 59.967 -6.1757 0 0 0 0.18984 1 42624 42624 39.95 7.6442 1 34743 15246 23199 23635 40807 40807 0.008866596431289508 LPGEGKSISY 10 Unmodified _LPGEGKSISY_ 0 0 0 ENSG00000137502|ENST00000527633|RAB30 ENSG00000137502|ENST00000527633|RAB30 ENSG00000137502|ENST00000527633|RAB30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2871704101562 2 525.776939 1049.53933 0.77451 0.00040722 0.60989 0.00032067 1.3844 0.00072789 525.7769109262491 49.324 0.45232 49.324 49.083 49.536 0 29 20 2 0 0 0 0.42068 1 27122 27122 20.454 1.1966 1 27881000 34744 4942 23200 23636 40808 40808 0.01653732860791024 LPGEQILAWA 10 Unmodified _LPGEQILAWA_ 0 0 0 ENSG00000014914|ENST00000439741|MTMR11;nc|ENSG00000014914|A4FU01-3|MTMR11;nc|ENSG00000014914|A4FU01-2|MTMR11;ENST00000492824.5_1_1:149905714-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-5|MTMR11;ENST00000482343.5_1_1:149902724-149908540:-|nuORF;nc|ENSG00000014914|A4FU01-6|MTMR11 ENSG00000014914|ENST00000439741|MTMR11 ENSG00000014914|ENST00000439741|MTMR11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.301025390625 2 549.303124 1096.5917 NaN NaN NaN NaN NaN NaN NaN 17.28 1 17.294 16.794 17.794 0.013865 0 0 0 0.95103 1 8579 8579 5.7319 2.1354 1 34745 488 23201 23637 40809 40809 0.04726315994366814 LPGEVLEY 8 Unmodified _LPGEVLEY_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 919.4765014648438 1 919.477125 918.469849 0.37369 0.0003436 -0.43171 -0.00039694 -0.058015 -5.3344E-05 919.4764598231278 66.865 0.29192 60.689 60.58 60.872 -6.1757 26 16 2 0 0 0 0.07972 2 43598 43468;43598 106.85 28.861 1 12708000 34746 16205 23202 23638 40810;40811 40811 0.0073527391199377234 LPGGALVLRE 10 Unmodified _LPGGALVLRE_ 0 0 0 REV__nc|ENSG00000128928|P26440-2|IVD REV__nc|ENSG00000128928|P26440-2|IVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.8107299804688 2 512.811116 1023.60768 0.55067 0.00028239 -0.82604 -0.0004236 -0.27537 -0.00014121 512.8107741621458 53.674 0.24457 53.674 53.525 53.77 0 19 11 2 0 0 0 0.077785 1 29737 29737 51.63 1.6968 1 4345000 + 34747 19644 23203 23639 40812 40812 0.09682022231265819 LPGGLQGLIL 10 Unmodified _LPGGLQGLIL_ 0 0 0 ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4;nc|ENSG00000213780|Q92759-2|GTF2H4;ENST00000487746.1_1_6:30877224-30879547:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.6121215820312 1 980.613894 979.606617 0.15623 0.0001532 -0.36228 -0.00035526 -0.20606 -0.00020206 980.613398585683 99.785 0.13309 93.61 93.558 93.691 -6.1757 16 9 2 0 0 0 0.0054975 1 66544 66544 97.075 4.2525 1 32282000 34748 10458 23204 23640 40813 40813 0.11599807862387479 LPGGLQGLIL 10 Unmodified _LPGGLQGLIL_ 0 0 0 ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4;nc|ENSG00000213780|Q92759-2|GTF2H4;ENST00000487746.1_1_6:30877224-30879547:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.8108520507812 2 490.810585 979.606617 0.21908 0.00010753 1.0057 0.00049359 1.2247 0.00060111 490.81092777172404 99.803 0.16254 93.627 93.541 93.703 -6.1757 29 11 3 0 0 0 0.045724 1 66550 66550 60.39 0 1 103880000 34749 10458 23204 23640 40814 40814 0.11599807862387479 LPGGPTLTF 9 Unmodified _LPGGPTLTF_ 0 0 0 nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7539367675781 2 451.752736 901.490919 1.4299 0.00064597 -0.211 -9.5322E-05 1.2189 0.00055065 451.7525827276384 79.662 0.37289 73.486 73.304 73.677 -6.1757 24 22 2 0 0 0 0.023164 1 52208 52208 60.39 9.5345 1 8212500 34750 4264 23205 23641 40815 40815 0.0362328401151899 LPGGSPWGWR 10 Unmodified _LPGGSPWGWR_ 0 0 0 ENST00000315520.9_1_12:50367174-50369543:+|nuORF ENST00000315520.9_1_12:50367174-50369543:+|nuORF ENST00000315520.9_1_12:50367174-50369543:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.784912109375 2 556.785433 1111.55631 0.69899 0.00038919 -0.63355 -0.00035275 0.065442 3.6437E-05 556.7850028862086 85.651 0.30846 85.149 85.086 85.395 -0.5015 20 14 2 0 0 0 0.69064 1 46897 46897 3.9444 0.66309 1 947370 34751 11732 23206 23642 40816 40816 0.004996982572265551 LPGHHPIW 8 Unmodified _LPGHHPIW_ 0 0 0 ENSG00000214787|ENST00000651255|MS4A4E;SVA_D_dup1229|chr17:30522805-30524227:+|1.1061942754633736|0.476847412502663|1.21|179.0|30|3|sense ENSG00000214787|ENST00000651255|MS4A4E ENSG00000214787|ENST00000651255|MS4A4E MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.5194091796875 1 956.510097 955.502821 0.80775 0.00077262 2.0073 0.00192 2.8151 0.0026926 956.5092117917235 74.927 0.88744 68.752 68.328 69.215 -6.1757 126 47 3 0 0 0 0.70131 1 48774 48774 17.087 17.087 1 35522000 34752 10509 23207 23643 40817 40817 0.02328945545377792 LPGHIQAVY 9 Unmodified _LPGHIQAVY_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.27734375 2 499.276909 996.539266 0.0059707 2.981E-06 0.12673 6.3274E-05 0.1327 6.6255E-05 499.276936555233 43.496 0.2514 43.186 43.066 43.317 -0.31039 15 11 2 0 0 0 0.14602 1 23173 23173 28.487 3.813 1 6494800 34753 889;16041 23208 23644 40818 40818 0.04085777651414446 LPGHIQAVY 9 Unmodified _LPGHIQAVY_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2764892578125 2 499.276909 996.539266 0.80888 0.00040385 -0.49192 -0.00024561 0.31695 0.00015825 499.2765986878095 48.946 0.45826 43.55 43.203 43.661 -5.3961 38 27 2 0 0 0 0.087258 1 30540 30540 36.044 3.9272 1 43570000 34754 889;16041 23208 23644 40819 40819 0.04085777651414446 LPGHLKLAVAF 11 Unmodified _LPGHLKLAVAF_ 0 0 0 REV__ENST00000460829.5_1_3:184046782-184052693:+|nuORF REV__ENST00000460829.5_1_3:184046782-184052693:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.23974609375 3 389.241248 1164.70191 NaN NaN NaN NaN NaN NaN NaN 40.526 1 40.531 40.031 41.031 0.0050545 0 0 0 0.8958 1 21614 21614 7.4771 4.1574 1 + 34755 27305 23209 23645 40820 40820 0.12615161053417978 LPGHPLYTY 9 Unmodified _LPGHPLYTY_ 0 0 0 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 ENSG00000183779|ENST00000331569|ZNF703 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7761840820312 2 530.776742 1059.53893 0.85485 0.00045374 0.19608 0.00010407 1.0509 0.00055781 531.2779866789176 49.384 0.29309 43.988 43.758 44.052 -5.3961 28 18 2 0 0 0 3.0991E-10 1 30805 30805 170.4 109.04 1 33270000 34756 9195 23210 23646 40821 40821 0.011543579315912211 LPGICHMAF 9 Unmodified _LPGICHMAF_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.741455078125 2 494.740791 987.467029 0.12805 6.3353E-05 1.5004 0.0007423 1.6284 0.00080565 494.7412424093148 64.395 0.2189 64.395 64.277 64.496 0 15 9 2 0 0 0 0.46577 1 35960 35960 9.3474 1.4373 1 548540 34757 4279 23211 23647 40822 40822 -0.02720596018150445 LPGKFEDMY 9 Oxidation (M) _LPGKFEDM(Oxidation (M))Y_ LPGKFEDM(1)Y LPGKFEDM(80)Y 0 0 1 ENST00000474868.1_2_1:47046162-47051597:-|nuORF;ENST00000480531.5_2_1:47042245-47051597:-|nuORF;ENST00000342571.7_2_1:47037799-47051597:-|nuORF;ENST00000486716.5_2_1:47040607-47059818:-|nuORF;nc|ENSG00000079277|Q9BUB5-3|MKNK1;ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1 ENST00000474868.1_2_1:47046162-47051597:-|nuORF ENST00000474868.1_2_1:47046162-47051597:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2578125 2 558.257525 1114.5005 0.5277 0.00029459 -0.057885 -3.2315E-05 0.46981 0.00026228 558.257656108635 38.17 0.42864 38.17 37.905 38.334 0 57 26 3 0 0 0 0.010301 1 20386 20386 79.596 46.811 1 17134000 34758 1269 23212 23648 40823 40823 214 -0.05217315765275998 LPGKFLLGY 9 Unmodified _LPGKFLLGY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H;ENST00000581510.1_1_17:27024935-27027680:+|nuORF ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.300537109375 2 504.299853 1006.58515 0.69282 0.00034939 0.21851 0.00011019 0.91132 0.00045958 504.2996230206628 68.738 0.66183 68.763 68.499 69.161 0.025146 62 31 3 0 0 0 0.019303 2 37816 37717;37816 64.236 22.142 1 10131000 34759 2632 23213 23649 40824;40825 40825 0.08212422833662458 LPGKFLLGY 9 Unmodified _LPGKFLLGY_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-2|SUPT6H;ENST00000581510.1_1_17:27024935-27027680:+|nuORF ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2996826171875 2 504.299853 1006.58515 1.2024 0.00060636 -0.25312 -0.00012765 0.94925 0.00047871 504.2995873947552 88.394 0.76647 82.218 81.85 82.617 -6.1757 81 42 2 0 0 0 0.013323 2 58103 58103;58227 71.134 19.263 1 17552000 34760 2632 23213 23649 40826;40827 40826 0.08212422833662458 LPGKTFVY 8 Unmodified _LPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7632446289062 2 462.763104 923.511654 0.076233 3.5278E-05 -0.040497 -1.874E-05 0.035736 1.6537E-05 462.7627179700748 44.465 0.14109 44.443 44.325 44.466 -0.022064 9 6 2 0 0 0 0.56356 1 23853 23853 29.082 4.4077 1 3325000 34761 8482 23214 23650 40828 40828 0.04683874391173504 LPGKTFVY 8 Unmodified _LPGKTFVY_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7645263671875 2 462.763104 923.511654 0.89342 0.00041344 0.54124 0.00025047 1.4347 0.00066391 462.76325756414633 49.956 0.42965 44.417 44.218 44.647 -5.5391 52 27 2 0 0 0 0.44629 2 31307 31173;31307 39.957 7.6518 1 37814000 34762 8482 23214 23650 40829;40830 40830 0.04683874391173504 LPGKTPVY 8 Unmodified _LPGKTPVY_ 0 0 0 nc|ENSG00000126070|Q9H9G7-2|AGO3;ENSG00000126070|ENST00000373191|AGO3;nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2;ENSG00000092847|ENST00000373204|AGO1;ENSG00000134698|ENST00000373210|AGO4 nc|ENSG00000126070|Q9H9G7-2|AGO3;nc|ENSG00000123908|Q9UKV8-2|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.755859375 2 437.755278 873.496004 1.3847 0.00060614 0.11484 5.0271E-05 1.4995 0.00065642 437.7553465621898 35.782 0.4263 31.589 31.394 31.82 -4.1928 45 26 2 0 0 0 0.46468 1 20766 20766 38.176 5.8701 1 9402600 34763 3735;3925 23215 23651 40831 40831 0.05419587874132503 LPGKTYSF 8 Unmodified _LPGKTYSF_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7444763183594 2 456.744911 911.475269 -0.13746 -6.2785E-05 -0.11053 -5.0486E-05 -0.248 -0.00011327 456.7447428766558 39.221 0.40124 38.934 38.763 39.164 -0.28687 32 18 2 0 0 0 0.50673 1 20676 20676 34.102 1.9855 1 4951300 34764 2049 23216 23652 40832 40832 0.01598997494465948 LPGKTYSF 8 Unmodified _LPGKTYSF_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7449951171875 2 456.744911 911.475269 0.46544 0.00021259 -0.56007 -0.00025581 -0.094626 -4.322E-05 456.7445818515241 38.894 0.26307 38.906 38.779 39.042 0.011452 17 12 2 0 0 0 0.76266 1 20710 20710 11.64 2.2929 1 1518400 34765 2049 23216 23652 40833 40833 0.01598997494465948 LPGLLLHMC 9 Unmodified _LPGLLLHMC_ 0 0 0 ENST00000321725.10_1_3:52549009-52550096:+|nuORF ENST00000321725.10_1_3:52549009-52550096:+|nuORF ENST00000321725.10_1_3:52549009-52550096:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7735595703125 2 498.772091 995.529629 -0.35636 -0.00017774 1.1793 0.00058819 0.82292 0.00041045 498.7727932419477 78.437 0.22879 77.951 77.911 78.139 -0.48596 16 10 2 0 0 0 0.22317 1 42972 42972 20.871 1.4322 1 1207500 34766 11774 23217 23653 40834 40834 0.031685500500316266 LPGLPAPSM 9 Oxidation (M) _LPGLPAPSM(Oxidation (M))_ LPGLPAPSM(1) LPGLPAPSM(74) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7387390136719 2 449.738771 897.462989 0.3197 0.00014378 -0.27095 -0.00012186 0.048749 2.1924E-05 449.73867184145934 52.03 0.40881 51.596 51.381 51.789 -0.43367 43 20 3 0 0 0 0.012158 2 28030 28030;28139 74.396 36.245 1 5074100 34767 6628;16309;16310 23218 23654 40835;40836 40835 1157 0.010156377597922983 LPGLPAPSM 9 Oxidation (M) _LPGLPAPSM(Oxidation (M))_ LPGLPAPSM(1) LPGLPAPSM(110) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MSMS AL20221201_MKP_PDAC_01 4 449.7395629882812 2 449.738771 897.462989 NaN NaN NaN NaN NaN NaN NaN 59.457 1 53.342 52.842 53.842 -6.1147 0 0 0 0.010816 1 38179 38179 106.85 53.27 1 34768 6628;16309;16310 23218 23654 40837 40837 1157 0.010156377597922983 LPGLRRTL 8 Unmodified _LPGLRRTL_ 0 0 0 ENST00000470251.1_1_3:182878724-182880508:-|nuORF ENST00000470251.1_1_3:182878724-182880508:-|nuORF ENST00000470251.1_1_3:182878724-182880508:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.3023071289062 2 463.300719 924.586885 1.4856 0.00068828 0.92296 0.00042761 2.4086 0.0011159 463.30130933355224 103.01 0.25868 96.838 96.722 96.98 -6.1757 151 69 3 0 0 0 0.80676 1 69079 69079 2.5775 0 1 11395000 34769 13850 23219 23655 40838 40838 0.12157476642289566 LPGLSHQY 8 Unmodified _LPGLSHQY_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7408447265625 2 457.74016 913.465767 1.4692 0.0006725 1.1127 0.00050932 2.5819 0.0011818 457.74128551302584 41.632 0.48112 37.025 36.879 37.36 -4.6079 46 30 2 0 0 0 0.25522 1 24991 24991 61.357 23.206 1 10129000 34770 1880 23220 23656 40839 40839 0.005572292089482289 LPGLSHQY 8 Unmodified _LPGLSHQY_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.74016 913.465767 -0.42794 -0.00019589 1.1709 0.00053596 0.74294 0.00034007 457.7407730490154 36.894 0.28927 36.644 36.554 36.843 -0.2497 -0.19001 2.5357E-05 NaN 61.357 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1501000 34771 1880 23220 23656 0.005572292089482289 LPGNCTRSRRL 11 Unmodified _LPGNCTRSRRL_ 0 0 0 nc|ENSG00000237289|P12532-2|CKMT1A nc|ENSG00000237289|P12532-2|CKMT1A nc|ENSG00000237289|P12532-2|CKMT1A MSMS AL20221201_MKP_PDAC_01 4 636.8497924804688 2 636.851313 1271.68807 NaN NaN NaN NaN NaN NaN NaN 20.885 1 18.192 17.692 18.692 -2.693 0 0 0 0.93777 1 11147 11147 2.4985 0 1 34772 16564 23221 23657 40840 40840 0.06309560282670645 LPGNFRDL 8 Unmodified _LPGNFRDL_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2542114257812 2 466.253434 930.492316 0.63469 0.00029592 1.785 0.00083228 2.4197 0.0011282 466.2536554022817 35.289 0.4571 31.194 30.991 31.449 -4.0951 60 27 3 0 0 0 0.3408 1 20526 20526 50.855 10.406 1 27229000 34773 8268 23222 23658 40841 40841 0.024289181002814075 LPGPATPAY 9 Unmodified _LPGPATPAY_ 0 0 0 ENSG00000143079|ENST00000271277|CTTNBP2NL ENSG00000143079|ENST00000271277|CTTNBP2NL ENSG00000143079|ENST00000271277|CTTNBP2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7359924316406 2 443.737086 885.459619 0.13557 6.0158E-05 -0.10751 -4.7707E-05 0.02806 1.2451E-05 443.73669145934565 44.101 0.13526 44.101 44.036 44.171 0 11 6 2 0 0 0 0.023761 1 24006 24006 59.795 19.347 1 4868300 34774 5460 23223 23659 40842 40842 0.01230710977426952 LPGPATPAY 9 Unmodified _LPGPATPAY_ 0 0 0 ENSG00000143079|ENST00000271277|CTTNBP2NL ENSG00000143079|ENST00000271277|CTTNBP2NL ENSG00000143079|ENST00000271277|CTTNBP2NL MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7371520996094 2 443.737086 885.459619 0.99616 0.00044204 0.038075 1.6895E-05 1.0342 0.00045893 443.7369913218837 51.378 0.26137 45.729 45.586 45.848 -5.649 21 15 2 0 0 0 0.016494 1 32321 32321 67.035 3.4725 1 31914000 34775 5460 23223 23659 40843 40843 0.01230710977426952 LPGPHTSLLL 10 Unmodified _LPGPHTSLLL_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;ENST00000471025.1_1_3:39170643-39171861:+|nuORF nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8004760742188 2 524.313492 1046.61243 1.4604 0.00076573 1.0118 0.00053048 2.4722 0.0012962 524.3139944757912 95.703 0.26056 89.527 89.383 89.644 -6.1757 42 16 3 0 0 0 0.31022 2 63310 63310;63427 26.884 6.43 1 86169000 34776 7705 23224 23660 40844;40845 40844 0.09098906374060789 LPGPLGTVASF 11 Unmodified _LPGPLGTVASF_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7984619140625 2 529.797675 1057.5808 0.41806 0.00022149 1.1457 0.00060696 1.5637 0.00082845 529.798402029743 85.922 0.46378 85.421 85.185 85.649 -0.5015 29 18 2 0 0 0 0.63851 1 47060 47060 9.3831 3.1773 1 353800 34777 8764 23225 23661 40846 40846 0.05430913620079991 LPGPLGTVASF 11 Unmodified _LPGPLGTVASF_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7987060546875 2 529.797675 1057.5808 NaN NaN NaN NaN NaN NaN NaN 85.394 1 85.456 84.956 85.956 0.061638 0 0 0 2.614E-09 1 47272 47272 108 46.64 1 34778 8764 23225 23661 40847 40847 0.05430913620079991 LPGPLGTVASF 11 Unmodified _LPGPLGTVASF_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.80078125 2 529.797675 1057.5808 1.0336 0.00054758 0.33683 0.00017845 1.3704 0.00072603 529.7982845307486 94.828 0.84066 88.652 88.299 89.14 -6.1757 77 47 2 0 0 0 0.018566 3 62816 62816;62934;63091 58.679 21.632 1 13522000 34779 8764 23225 23661 40848;40849;40850 40848 0.05430913620079991 LPGPLHSL 8 Unmodified _LPGPLHSL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.247802734375 2 417.247621 832.480688 0.36529 0.00015242 0.163 6.8013E-05 0.5283 0.00022043 417.24779701625056 52.888 0.40652 52.437 52.241 52.647 -0.45173 36 20 2 0 0 0 0.18881 2 28551 28551;28661 74.396 7.361 1 2071300 34780 763;12747 23226 23662 40851;40852 40851 0.05774721076943479 LPGPLHSL 8 Unmodified _LPGPLHSL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2484436035156 2 417.247621 832.480688 1.6022 0.00066851 -0.14313 -5.9721E-05 1.4591 0.00060879 417.2475249513956 58.395 0.3631 52.32 52.184 52.547 -6.0745 29 19 2 0 0 0 0.11943 1 37462 37462 93.883 7.7621 1 11322000 34781 763;12747 23226 23662 40853 40853 0.05774721076943479 LPGPPATSM 9 Oxidation (M) _LPGPPATSM(Oxidation (M))_ LPGPPATSM(1) LPGPPATSM(50) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7203369140625 2 443.720578 885.426604 0.34473 0.00015297 -0.50196 -0.00022273 -0.15723 -6.9766E-05 443.7203058259065 31.42 0.48661 31.42 31.194 31.681 0 42 23 2 0 0 0 0.040472 1 16387 16387 49.669 24.995 1 2217300 34782 6628;16309;16310 23227 23663 40854 40854 1158 -0.020692391369152574 LPGPPVDPDSQ 11 Unmodified _LPGPPVDPDSQ_ 0 0 0 nc|ENSG00000167646|Q8N9W5-3|DNAAF3 nc|ENSG00000167646|Q8N9W5-3|DNAAF3 nc|ENSG00000167646|Q8N9W5-3|DNAAF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2783203125 2 561.277303 1120.54005 NaN NaN NaN NaN NaN NaN NaN 71.597 1 71.597 71.097 72.097 0 0 0 0 0.85601 1 39878 39878 9.3831 2.0939 1 34783 16360 23228 23664 40855 40855 -0.015394724901852896 LPGPPVRY 8 Unmodified _LPGPPVRY_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7608947753906 2 449.760895 897.507237 0.82697 0.00037194 0.6383 0.00028708 1.4653 0.00065903 449.7608333139059 48.193 0.44976 42.959 42.692 43.142 -5.2339 45 26 2 0 0 0 0.24071 2 29918 29918;30050 63.563 20.595 1 17774000 34784 601 23229 23665 40856;40857 40856 0.05438409968269298 LPGPQTEPF 9 Unmodified _LPGPQTEPF_ 0 0 0 REV__ENSG00000116996|ENST00000366570|ZP4 REV__ENSG00000116996|ENST00000366570|ZP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2544860839844 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 81.681 1 81.681 81.181 82.181 0 0 0 0 0.82396 1 45330 45330 4.756 1.8668 1 + 34785 19078 23230 23666 40858 40858 -0.0012192133942789951 LPGPTCQTRL 10 Unmodified _LPGPTCQTRL_ 0 0 0 REV__ENST00000595794.5_1_19:51305499-51305637:-|nuORF REV__ENST00000595794.5_1_19:51305499-51305637:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.7269287109375 2 543.292233 1084.56991 NaN NaN NaN NaN NaN NaN NaN 88.239 1 82.064 81.564 82.564 -6.1757 0 0 0 0.83398 1 58207 58207 10.824 0.64053 1 + 34786 29216 23231 23667 40859 40859 0.031011879741527082 LPGPVKSY 8 Unmodified _LPGPVKSY_ 0 0 0 ENST00000606725.5_1_19:19414686-19431305:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;ENSG00000105705|ENST00000247001|SUGP1;ENST00000588580.6_1_19:19416529-19427355:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.746826171875 2 430.747453 859.480354 -1.1325 -0.00048782 0.055821 2.4045E-05 -1.0767 -0.00046377 430.7474068803244 32.561 0.17746 32.561 32.481 32.658 0 16 9 2 0 0 0 0.50364 1 17030 17030 34.402 12.655 1 5430500 34787 2356 23232 23668 40860 40860 0.04499301357088825 LPGPVKSY 8 Unmodified _LPGPVKSY_ 0 0 0 ENST00000606725.5_1_19:19414686-19431305:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;ENSG00000105705|ENST00000247001|SUGP1;ENST00000588580.6_1_19:19416529-19427355:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.7476501464844 2 430.747453 859.480354 1.3278 0.00057193 -0.58008 -0.00024987 0.74769 0.00032207 430.7471255806576 37.273 0.42689 32.989 32.75 33.177 -4.2835 55 25 3 0 0 0 0.29252 2 21893 21772;21893 56.177 16.22 1 22054000 34788 2356 23232 23668 40861;40862 40862 0.04499301357088825 LPGPVKSY 8 Unmodified _LPGPVKSY_ 0 0 0 ENST00000606725.5_1_19:19414686-19431305:-|nuORF;nc|ENSG00000105705|Q8IWZ8-2|SUGP1;ENSG00000105705|ENST00000247001|SUGP1;ENST00000588580.6_1_19:19416529-19427355:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF ENST00000606725.5_1_19:19414686-19431305:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 430.747453 859.480354 -0.23944 -0.00010314 0.46348 0.00019964 0.22404 9.6505E-05 430.74773453225845 32.605 0.2076 32.476 32.392 32.6 -0.12915 -0.042621 0.00020215 NaN 34.402 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1480700 34789 2356 23232 23668 0.04499301357088825 LPGPVTLVM 9 Oxidation (M) _LPGPVTLVM(Oxidation (M))_ LPGPVTLVM(1) LPGPVTLVM(57) 0 0 1 ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7696838378906 2 471.770071 941.52559 0.57867 0.000273 0.050793 2.3963E-05 0.62946 0.00029696 471.76992834244874 64.677 0.47624 64.192 63.971 64.447 -0.48512 40 21 2 0 0 0 0.027803 1 35237 35237 56.541 16.584 1 4668300 34790 9819 23233 23669 40863 40863 1574 0.052487838279716925 LPGPVTLVM 9 Oxidation (M) _LPGPVTLVM(Oxidation (M))_ LPGPVTLVM(1) LPGPVTLVM(47) 0 0 1 ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.7704772949219 2 471.770071 941.52559 0.80396 0.00037929 -0.47305 -0.00022317 0.33092 0.00015612 471.7699500849387 64.234 0.3214 64.224 64.037 64.358 -0.010536 29 15 3 0 0 0 0.045537 1 35172 35172 46.921 10.877 1 2467400 34791 9819 23233 23669 40864 40864 1574 0.052487838279716925 LPGPVTLVM 9 Unmodified _LPGPVTLVM_ 0 0 0 ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC ENSG00000196449|ENST00000373044|YRDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.5379638671875 1 926.537951 925.530675 1.2279 0.0011377 -1.6806 -0.0015571 -0.45269 -0.00041944 926.5359580990562 90.874 0.49799 84.699 84.427 84.925 -6.1757 49 29 2 0 0 0 0.0086179 4 60039 59909;60039;60177;60186 89.427 15.004 1 9147300 34792 9819 23233 23670 40865;40866;40867;40868 40866 0.06493087690591892 LPGQVLERL 9 Unmodified _LPGQVLERL_ 0 0 0 ENST00000284006.10_1_19:34303676-34303850:+|nuORF ENST00000284006.10_1_19:34303676-34303850:+|nuORF ENST00000284006.10_1_19:34303676-34303850:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7183837890625 2 512.811116 1023.60768 0.55067 0.00028239 -0.82604 -0.0004236 -0.27537 -0.00014121 512.8107741621458 53.674 0.24457 53.674 53.525 53.77 0 19 11 2 0 0 0 0.12771 1 29731 29731 27.629 0 1 4345000 34793 11430 23234 23671 40869 40869 0.09682022231288556 LPGRAAAAVRR 11 Unmodified _LPGRAAAAVRR_ 0 0 0 REV__ENSG00000105509|ENST00000540069|HAS1 REV__ENSG00000105509|ENST00000540069|HAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8818359375 3 379.903629 1136.68906 1.004 0.00038141 -0.2128 -8.0844E-05 0.79117 0.00030057 379.9035705693768 26.889 0.32129 23.853 23.628 23.949 -3.0365 25 16 2 0 0 0 0.30445 1 14760 14760 2.4348 1.3633 1 10190000 + 34794 18430 23235 23672 40870 40870 0.12618142713859015 LPGRDRLAI 9 Unmodified _LPGRDRLAI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.8096008300781 2 505.808908 1009.60326 0.73067 0.00036958 -1.2223 -0.00061823 -0.49159 -0.00024865 505.80865321590846 41.547 0.26264 36.939 36.833 37.095 -4.6079 26 17 2 0 0 0 0.21643 1 24990 24990 21.537 6.6987 1 8289400 34795 16188 23236 23673 40871 40871 0.09884557808345562 LPGRDRLAISL 11 Unmodified _LPGRDRLAISL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2472839355469 3 404.247062 1209.71936 0.41576 0.00016807 -0.33295 -0.00013459 0.08281 3.3476E-05 404.24701149691515 52.706 0.32308 52.642 52.522 52.845 -0.063423 28 15 3 0 0 0 0.42951 1 28575 28575 19.987 5.0297 1 3395000 34796 16188 23237 23674 40872 40872 0.12288456588407826 LPGRKNSVAL 10 Unmodified _LPGRKNSVAL_ 0 0 0 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.82177734375 2 527.822015 1053.62948 0.18178 9.5948E-05 -0.18856 -9.9527E-05 -0.0067801 -3.5787E-06 527.8218988076097 58.558 0.23112 58.067 57.901 58.133 -0.49079 15 10 2 0 0 0 0.44373 1 31863 31863 19.257 3.4098 1 1425000 34797 16287 23238 23675 40873 40873 0.10480826979846825 LPGRKNSVAL 10 Unmodified _LPGRKNSVAL_ 0 0 0 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8216552734375 2 527.822015 1053.62948 0.71294 0.00037631 -1.0187 -0.00053769 -0.30575 -0.00016138 527.8214952255097 58.173 0.1987 58.113 58.016 58.215 -0.060719 17 9 2 0 0 0 0.38092 1 31693 31693 22.736 0.98964 1 2344800 34798 16287 23238 23675 40874 40874 0.10480826979846825 LPGRKNSVAL 10 Unmodified _LPGRKNSVAL_ 0 0 0 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.822015 1053.62948 0.18178 9.5948E-05 -0.18856 -9.9527E-05 -0.0067801 -3.5787E-06 527.8218988076097 58.558 0.23112 58.067 57.901 58.133 -0.49079 -0.022579 0.00044811 NaN 22.736 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1425000 34799 16287 23238 23675 0.10480826979846825 LPGRTVLVY 9 Unmodified _LPGRTVLVY_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3090515136719 2 509.30821 1016.60187 1.634 0.00083223 -0.72327 -0.00036837 0.91076 0.00046386 509.3078690601645 50.122 0.44498 50.073 49.865 50.31 -0.048824 54 21 3 0 0 0 0.11784 2 27174 27072;27174 31.268 8.5321 1 5964700 34800 4151 23239 23676 40875;40876 40876 0.09422923719591836 LPGSAFTL 8 Unmodified _LPGSAFTL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.4459838867188 1 805.445431 804.438155 -0.37695 -0.00030361 0.087152 7.0196E-05 -0.2898 -0.00023342 805.4455906873296 70.062 0.44385 69.583 69.314 69.758 -0.47903 40 23 2 0 0 0 0.15234 2 38213 38213;38317 86.121 19.086 1 3559000 34801 4412 23240 23677 40877;40878 40877 0.028113259487213327 LPGSAFTL 8 Unmodified _LPGSAFTL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 805.4459228515625 1 805.445431 804.438155 1.0838 0.00087297 -0.78511 -0.00063236 0.29872 0.00024061 805.4445449907132 76.078 0.7216 69.903 69.561 70.282 -6.1757 54 39 2 0 0 0 0.18881 2 49754 49754;49886 74.396 17.855 1 10712000 34802 4412 23240 23677 40879;40880 40879 0.028113259487213327 LPGSIQHVY 9 Unmodified _LPGSIQHVY_ 0 0 0 ENSG00000054611|ENST00000337137|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2750244140625 2 507.274367 1012.53418 0.15312 7.7674E-05 0.22808 0.0001157 0.3812 0.00019337 507.2747052306764 40.359 0.29567 40.062 39.903 40.199 -0.29716 40 13 4 0 0 0 0.0090524 1 21303 21303 85.642 51.24 1 15122000 34803 762 23241 23678 40881 40881 0.028414737887942465 LPGSIQHVY 9 Unmodified _LPGSIQHVY_ 0 0 0 ENSG00000054611|ENST00000337137|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2750549316406 2 507.274367 1012.53418 0.41785 0.00021197 0.39844 0.00020212 0.8163 0.00041409 507.2746099419299 45.47 0.42484 40.515 40.32 40.745 -4.9549 53 28 2 0 0 0 0.0086904 2 27828 27828;27969 107.19 61.166 1 60726000 34804 762 23241 23678 40882;40883 40882 0.028414737887942465 LPGSIQPVY 9 Unmodified _LPGSIQPVY_ 0 0 0 ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B ENSG00000065491|ENST00000373491|TBC1D22B MSMS AL20221201_MKP_PDAC_01 4 487.2722778320312 2 487.271293 972.528032 NaN NaN NaN NaN NaN NaN NaN 63.836 1 57.661 57.161 58.161 -6.1757 0 0 0 0.15618 1 41305 41305 36.044 10.645 1 34805 906 23242 23679 40884 40884 0.04066955557277652 LPGSKCCV 8 Unmodified _LPGSKCCV_ 0 0 0 REV__ENST00000454442.5_1_12:53565050-53565697:-|nuORF REV__ENST00000454442.5_1_12:53565050-53565697:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.3890380859375 1 806.389907 805.382631 0.95883 0.00077319 -2.6334 -0.0021236 -1.6746 -0.0013504 806.3898645352705 84.331 0.048759 78.155 78.124 78.172 -6.1757 4 2 2 0 0 0 0.74163 1 55483 55483 13.508 3.3245 1 5238800 + 34806 26882 23243 23680 40885 40885 -0.02784546834914181 LPGSKGITL 9 Unmodified _LPGSKGITL_ 0 0 0 ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 ENSG00000197565|ENST00000334504|COL4A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2739868164062 2 443.273835 884.533118 -0.426 -0.00018883 0.17584 7.7947E-05 -0.25015 -0.00011089 443.2738851601477 35.352 0.24445 35.129 35.001 35.245 -0.2224 19 10 3 0 0 0 0.091924 1 18509 18509 34.932 0 1 2516300 34807 9971 23244 23681 40886 40886 0.08623259419891838 LPGSLATL 8 Unmodified _LPGSLATL_ 0 0 0 REV__ENST00000315150.9_1_3:128809193-128809469:-|nuORF REV__ENST00000315150.9_1_3:128809193-128809469:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.2338562011719 2 386.234179 770.453805 NaN NaN NaN NaN NaN NaN NaN 15.149 1 12.622 12.122 13.122 -2.5273 0 0 0 0.97444 1 7748 7748 5.2307 0 1 + 34808 25456 23245 23682 40887 40887 0.05939612465761002 LPGSSRAPL 9 Unmodified _LPGSSRAPL_ 0 0 0 ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2611389160156 2 449.261259 896.507966 -0.23274 -0.00010456 0.20989 9.4297E-05 -0.022846 -1.0264E-05 449.2613835066004 32.424 0.33828 32.294 32.12 32.459 -0.12915 32 14 3 0 0 0 0.30202 1 16944 16944 17.113 0.1706 1 14725000 34809 12579 23246 23683 40888 40888 0.055572046173210765 LPGSSRAPL 9 Unmodified _LPGSSRAPL_ 0 0 0 ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.26123046875 2 449.261259 896.507966 0.24608 0.00011055 0.20171 9.0622E-05 0.44779 0.00020118 449.2612302199874 32.284 0.21965 32.314 32.194 32.414 0.029743 13 9 2 0 0 0 0.30202 1 16921 16921 17.113 0.1706 1 2425800 34810 12579 23246 23683 40889 40889 0.055572046173210765 LPGSSRAPL 9 Unmodified _LPGSSRAPL_ 0 0 0 ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF ENST00000379789.8_1_10:6275597-6275735:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 449.261259 896.507966 -0.23274 -0.00010456 0.20989 9.4297E-05 -0.022846 -1.0264E-05 449.2613835066004 32.424 0.33828 32.294 32.12 32.459 -0.12915 -0.0098592 3.21E-06 NaN 17.113 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 14725000 34811 12579 23246 23683 0.055572046173210765 LPGTHALVI 9 Unmodified _LPGTHALVI_ 0 0 0 ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B ENST00000412626.2_1_9:67272267-67281749:-|nuORF ENST00000412626.2_1_9:67272267-67281749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.7821960449219 2 460.781828 919.549102 0.16322 7.5208E-05 -0.40644 -0.00018728 -0.24323 -0.00011207 460.78157927344927 54.049 0.30033 53.583 53.446 53.746 -0.46664 34 14 3 0 0 0 0.010877 1 29251 29251 77.984 3.5616 1 6280700 34812 10824 23247 23684 40890 40890 0.0861096565678281 LPGTHALVI 9 Unmodified _LPGTHALVI_ 0 0 0 ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B ENST00000412626.2_1_9:67272267-67281749:-|nuORF ENST00000412626.2_1_9:67272267-67281749:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.7813415527344 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 59.693 1 53.578 53.078 54.078 -6.1147 0 0 0 0.029091 1 38346 38346 67.344 3.1075 1 34813 10824 23247 23684 40891 40891 0.0861096565678281 LPGTHALVI 9 Unmodified _LPGTHALVI_ 0 0 0 ENST00000412626.2_1_9:67272267-67281749:-|nuORF;nc|ENSG00000279688|A6NL99|AQP7P3;ENSG00000259916|ENST00000561882|AQP7B;nc|ENSG00000259916|A0A075B734|AQP7B ENST00000412626.2_1_9:67272267-67281749:-|nuORF ENST00000412626.2_1_9:67272267-67281749:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.78173828125 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 59.881 1 53.766 53.266 54.266 -6.1147 0 0 0 0.050352 1 38495 38495 57.471 9.1255 1 34814 10824 23247 23684 40892 40892 0.0861096565678281 LPGTSGCFPC 10 Unmodified _LPGTSGCFPC_ 0 0 0 ENST00000419037.5_1_7:99753435-99755466:-|nuORF;ENST00000498638.1_1_7:99753991-99754759:-|nuORF;ENSG00000146826|ENST00000316937|TRAPPC14 ENST00000419037.5_1_7:99753435-99755466:-|nuORF ENST00000419037.5_1_7:99753435-99755466:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.212890625 2 491.212063 980.409574 -0.20616 -0.00010127 -0.11234 -5.5183E-05 -0.3185 -0.00015645 491.2125102850185 40.769 0.24514 40.769 40.545 40.79 0 17 13 2 0 0 0 0.50944 1 21840 21840 15.847 1.2655 1 3305600 34815 5797 23248 23685 40893 40893 -0.08141483014378537 LPGTSGCFPC 10 Unmodified _LPGTSGCFPC_ 0 0 0 ENST00000419037.5_1_7:99753435-99755466:-|nuORF;ENST00000498638.1_1_7:99753991-99754759:-|nuORF;ENSG00000146826|ENST00000316937|TRAPPC14 ENST00000419037.5_1_7:99753435-99755466:-|nuORF ENST00000419037.5_1_7:99753435-99755466:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.212063 980.409574 -0.20616 -0.00010127 -0.11234 -5.5183E-05 -0.3185 -0.00015645 491.2125102850185 40.769 0.24514 40.769 40.545 40.79 0 -0.0024541 -0.000319 NaN 15.847 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3305600 34816 5797 23248 23685 -0.08141483014378537 LPGTSGCFPC 10 Unmodified _LPGTSGCFPC_ 0 0 0 ENST00000419037.5_1_7:99753435-99755466:-|nuORF;ENST00000498638.1_1_7:99753991-99754759:-|nuORF;ENSG00000146826|ENST00000316937|TRAPPC14 ENST00000419037.5_1_7:99753435-99755466:-|nuORF ENST00000419037.5_1_7:99753435-99755466:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 491.212063 980.409574 0.41367 0.0002032 0.31507 0.00015477 0.72874 0.00035796 491.2121956191161 41.077 0.24674 40.774 40.64 40.887 -0.30304 0.0024541 0.0001009 NaN 15.847 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1240600 34817 5797 23248 23685 -0.08141483014378537 LPGVPCYPY 9 Unmodified _LPGVPCYPY_ 0 0 0 ENST00000301042.7_2_12:48743980-48744673:-|nuORF ENST00000301042.7_2_12:48743980-48744673:-|nuORF ENST00000301042.7_2_12:48743980-48744673:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2985534667969 2 504.746596 1007.47864 0.70482 0.00035575 -0.30588 -0.00015439 0.39894 0.00020136 504.7464792768943 59.629 0.39659 59.629 59.423 59.819 0 24 17 2 0 0 0 0.18941 1 33293 33293 9.3474 0 1 2769800 34818 11563 23249 23686 40894 40894 -0.02480075723178743 LPGVRAVQGL 10 Unmodified _LPGVRAVQGL_ 0 0 0 REV__ENST00000393800.6_2_11:68382148-68382592:+|nuORF REV__ENST00000393800.6_2_11:68382148-68382592:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8341979980469 2 505.311284 1008.60801 0.23509 0.00011879 0.35059 0.00017716 0.58568 0.00029595 505.3114593783826 53.164 0.095604 53.101 53.061 53.157 -0.063423 7 4 2 0 0 0 0.23634 1 28838 28838 6.7232 1.9672 1 742120 + 34819 26430 23250 23687 40895 40895 0.10405441951138528 LPGVTIGQI 9 Unmodified _LPGVTIGQI_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MSMS AL20221201_MKP_PDAC_01 4 449.2748107910156 2 449.273835 896.533118 NaN NaN NaN NaN NaN NaN NaN 92.093 1 85.918 85.418 86.418 -6.1757 0 0 0 0.29524 1 60893 60893 25.399 0 1 + 34820 23146 23251 23688 40896 40896 0.08071259419898524 LPGWIVPGAGS 11 Unmodified _LPGWIVPGAGS_ 0 0 0 ENST00000240333.10_1_17:47782628-47783684:-|nuORF ENST00000240333.10_1_17:47782628-47783684:-|nuORF ENST00000240333.10_1_17:47782628-47783684:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2665405273438 2 527.290017 1052.56548 0.46769 0.00024661 -4.1354 -0.0021805 -3.6677 -0.0019339 527.288513389363 82.863 0.38593 82.366 82.102 82.488 -0.49751 22 16 2 0 0 0 0.28953 1 45230 45230 13.042 1.4022 1 696540 34821 11105 23252 23689 40897 40897 0.04130046822888289 LPGWKQLQMKK 11 Unmodified _LPGWKQLQMKK_ 0 0 0 nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL nc|ENSG00000135407|O75366-2|AVIL nc|ENSG00000135407|O75366-2|AVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.9329223632812 3 452.932197 1355.77476 0.1866 8.4517E-05 1.8988 0.00086004 2.0854 0.00094456 452.93291025289324 32.17 0.17381 32.2 32.084 32.258 0.029747 13 7 2 0 0 0 0.67037 1 16867 16867 7.0371 3.4444 1 2821500 34822 4702 23253 23690 40898 40898 0.11110546784493636 LPGWLDPQSVL 11 Unmodified _LPGWLDPQSVL_ 0 0 0 ENST00000356924.8_1_14:74766299-74766908:-|nuORF ENST00000356924.8_1_14:74766299-74766908:-|nuORF ENST00000356924.8_1_14:74766299-74766908:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3082275390625 2 612.834788 1223.65502 0.54771 0.00033566 1.5575 0.00095447 2.1052 0.0012901 612.8359706556436 59.587 0.19547 59.534 59.46 59.655 -0.053062 13 9 2 0 0 0 0.29588 1 32515 32515 5.7319 0 1 2968100 34823 12102 23254 23691 40899 40899 0.052142567116106875 LPHAEAHEF 9 Unmodified _LPHAEAHEF_ 0 0 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-3|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8380432128906 3 350.838291 1049.49304 -0.51099 -0.00017927 0.42032 0.00014747 -0.090664 -3.1808E-05 350.83821871867457 26.502 0.18562 26.502 26.407 26.592 0 14 8 2 0 0 0 0.43463 1 13618 13618 10.8 6.61 1 1307800 34824 7609 23255 23692 40900 40900 -0.029722872506681597 LPHALLAVL 9 Unmodified _LPHALLAVL_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.8080749511719 2 473.807845 945.601138 0.16431 7.7853E-05 0.71187 0.00033729 0.87618 0.00041514 473.8084136587345 79.537 0.51102 79.592 79.31 79.821 0.05497 43 19 4 0 0 0 0.085487 2 43896 43896;44007 36.466 15.595 1 5866600 34825 3801 23256 23693 40901;40902 40901 0.1261612907056815 LPHALLAVL 9 Unmodified _LPHALLAVL_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.8081359863281 2 473.807845 945.601138 1.2008 0.00056893 -0.11579 -5.4861E-05 1.085 0.00051407 473.8077513769059 98.43 0.16129 92.255 92.163 92.324 -6.1757 23 10 3 0 0 0 0.028712 1 65293 65293 56.048 10.298 1 46543000 34826 3801 23256 23693 40903 40903 0.1261612907056815 LPHAPGVQM 9 Oxidation (M) _LPHAPGVQM(Oxidation (M))_ LPHAPGVQM(1) LPHAPGVQM(67) 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2474365234375 2 483.247295 964.480036 -0.36166 -0.00017477 -0.30817 -0.00014892 -0.66983 -0.00032369 483.24733018228324 28.773 0.55931 28.773 28.483 29.043 0 86 27 4 0 0 0 0.016494 2 14947 14845;14947 67.035 40.694 1 52299000 34827 9847;3221 23257 23694 40904;40905 40905 574 -0.0036244163439960175 LPHAPGVQM 9 Oxidation (M) _LPHAPGVQM(Oxidation (M))_ LPHAPGVQM(1) LPHAPGVQM(67) 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.247802734375 2 483.247295 964.480036 0.70378 0.0003401 -0.6745 -0.00032595 0.029281 1.415E-05 483.2471896023101 28.739 0.57619 28.677 28.345 28.921 -0.062159 71 23 4 0 0 0 0.016494 3 14750 14750;14851;14950 67.035 40.694 1 37236000 34828 9847;3221 23257 23694 40906;40907;40908 40906 574 -0.0036244163439960175 LPHAPGVQM 9 Oxidation (M) _LPHAPGVQM(Oxidation (M))_ LPHAPGVQM(1) LPHAPGVQM(71) 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2480773925781 2 483.247295 964.480036 0.63782 0.00030823 -0.30683 -0.00014827 0.33099 0.00015995 483.2470897086338 33.036 0.71721 29.18 28.814 29.531 -3.8562 114 43 3 0 0 0 0.013472 3 18724 18724;18847;18970 70.716 43.832 1 195700000 34829 9847;3221 23257 23694 40909;40910;40911 40909 574 -0.0036244163439960175 LPHAPGVQM 9 Unmodified _LPHAPGVQM_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2493591308594 2 475.249837 948.485122 -0.15718 -7.47E-05 0.34592 0.0001644 0.18874 8.9697E-05 475.2501346402108 40.756 0.15102 40.756 40.639 40.79 0 11 8 2 0 0 0 0.3554 1 21894 21894 14.582 0 1 3230400 34830 9847;3221 23257 23695 40912 40912 0.008818622282092292 LPHAPGVQM 9 Unmodified _LPHAPGVQM_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2493591308594 2 475.249837 948.485122 0.29872 0.00014197 -0.2769 -0.0001316 0.021821 1.037E-05 475.2498773003764 41.145 0.34628 40.842 40.64 40.986 -0.30304 44 16 4 0 0 0 0.10925 2 21723 21723;21826 32.117 0 1 13017000 34831 9847;3221 23257 23695 40913;40914 40913 0.008818622282092292 LPHAPGVQM 9 Unmodified _LPHAPGVQM_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2501525878906 2 475.249837 948.485122 0.46153 0.00021934 -0.28563 -0.00013575 0.1759 8.3595E-05 475.2499310487676 46.427 0.45852 41.347 41.064 41.523 -5.0805 120 45 4 0 0 0 0.078417 2 28688 28552;28688 38.151 13.982 1 686790000 34832 9847;3221 23257 23695 40915;40916 40916 0.008818622282092292 LPHAPGVQM 9 Unmodified _LPHAPGVQM_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 475.249837 948.485122 0.31765 0.00015096 -0.18588 -8.8338E-05 0.13178 6.2627E-05 475.2498492501948 40.803 0.13922 40.801 40.752 40.891 -0.0017929 0.0015201 5.9408E-05 NaN 32.117 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 933310 34833 9847;3221 23257 23695 0.008818622282092292 LPHARLKD 8 Unmodified _LPHARLKD_ 0 0 0 REV__ENSG00000185974|ENST00000335678|GRK1 REV__ENSG00000185974|ENST00000335678|GRK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2820434570312 2 475.282526 948.550499 0.46532 0.00022116 -0.39145 -0.00018605 0.073874 3.5111E-05 475.2821694010194 27.469 0.33544 24.432 24.28 24.615 -3.0365 35 16 3 0 0 0 0.70294 1 15197 15197 16.942 0 1 36118000 + 34834 23542 23258 23696 40917 40917 0.07416599745556596 LPHAVQETF 9 Unmodified _LPHAVQETF_ 0 0 0 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2713012695312 2 521.271824 1040.5291 -0.13879 -7.2346E-05 0.018158 9.4652E-06 -0.12063 -6.2881E-05 521.2716853902317 41.487 0.38665 41.487 41.281 41.668 0 48 19 3 0 0 0 0.010877 2 22443 22321;22443 77.984 35.89 1 40006000 34835 5179 23259 23697 40918;40919 40919 0.010451699261693648 LPHAVQETF 9 Unmodified _LPHAVQETF_ 0 0 0 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2713623046875 2 521.271824 1040.5291 -0.39485 -0.00020582 0.036646 1.9103E-05 -0.3582 -0.00018672 521.2714065820209 41.793 0.2224 41.486 41.375 41.597 -0.30682 18 10 2 0 0 0 0.016184 1 22172 22172 67.344 21.323 1 6657500 34836 5179 23259 23697 40920 40920 0.010451699261693648 LPHAVQETF 9 Unmodified _LPHAVQETF_ 0 0 0 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2716064453125 2 521.271824 1040.5291 0.7207 0.00037568 -0.75193 -0.00039196 -0.031228 -1.6278E-05 521.2713984786524 46.976 0.48387 41.895 41.682 42.166 -5.0805 101 56 2 0 0 0 0.010877 3 29109 28980;29109;29244 77.984 29.638 1 41467000 34837 5179 23259 23697 40921;40922;40923 40922 0.010451699261693648 LPHCGWVFIY 10 Unmodified _LPHCGWVFIY_ 0 0 0 REV__ENST00000275954.3_1_X:34648451-34648508:-|nuORF REV__ENST00000275954.3_1_X:34648451-34648508:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.8076782226562 2 617.807519 1233.60049 0.015791 9.7558E-06 -0.16837 -0.00010402 -0.15257 -9.4261E-05 617.8076312390675 36.93 0.31683 36.952 36.791 37.108 0.021545 36 14 3 0 0 0 0.65502 1 19558 19558 7.9102 1.7044 1 4410800 + 34838 25171 23260 23698 40924 40924 -0.006970336407903233 LPHCGWVFIY 10 Unmodified _LPHCGWVFIY_ 0 0 0 REV__ENST00000275954.3_1_X:34648451-34648508:-|nuORF REV__ENST00000275954.3_1_X:34648451-34648508:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3329467773438 2 617.807519 1233.60049 0.015791 9.7558E-06 -0.16837 -0.00010402 -0.15257 -9.4261E-05 617.8076312390675 36.93 0.31683 36.952 36.791 37.108 0.021545 36 14 3 0 0 0 0.23821 1 19524 19524 4.3292 0.73274 1 4410800 + 34839 25171 23260 23698 40925 40925 -0.006970336407903233 LPHDAELAY 9 Unmodified _LPHDAELAY_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7561645507812 2 514.756007 1027.49746 0.087507 4.5045E-05 -0.16501 -8.4939E-05 -0.077501 -3.9894E-05 514.7559331178006 40.244 0.34374 40.244 40.068 40.412 0 58 16 5 0 0 0 0.038285 2 21572 21572;21679 50.855 16.753 1 46154000 34840 4213 23261 23699 40926;40927 40926 -0.015188228277793314 LPHDAELAY 9 Unmodified _LPHDAELAY_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7569580078125 2 514.756007 1027.49746 0.64916 0.00033416 0.71216 0.00036659 1.3613 0.00070075 514.7564543474897 45.887 0.55728 40.932 40.698 41.255 -4.9549 99 36 4 0 0 0 0.06187 1 28254 28254 42.095 7.9921 1 76144000 34841 4213 23261 23699 40928 40928 -0.015188228277793314 LPHDLAVQA 9 Unmodified _LPHDLAVQA_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1;ENST00000487671.1_1_22:31840579-31845472:-|nuORF nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2666015625 2 482.266542 962.51853 NaN NaN NaN NaN NaN NaN NaN 39.246 1 39.246 38.746 39.746 0 0 0 0 0.26667 1 21018 21018 26.884 3.7352 1 34842 9286 23262 23700 40929 40929 0.03577187271741877 LPHDPDLAY 9 Unmodified _LPHDPDLAY_ 0 0 0 ENSG00000132003|ENST00000590508|ZSWIM4;nc|ENSG00000132003|Q9H7M6|ZSWIM4 ENSG00000132003|ENST00000590508|ZSWIM4;nc|ENSG00000132003|Q9H7M6|ZSWIM4 nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.758056640625 2 520.756007 1039.49746 1.3417 0.00069869 1.3984 0.0007282 2.74 0.0014269 520.7570127560035 47.844 0.40549 42.61 42.403 42.808 -5.2339 62 24 3 0 0 0 0.087258 2 29695 29695;29824 36.044 14.298 1 77298000 34843 4365;16192 23263 23701 40930;40931 40930 -0.020708228277726448 LPHDPTADVF 10 Unmodified _LPHDPTADVF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2752685546875 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 49.478 1 49.478 48.978 49.978 0 0 0 0 0.38297 1 27228 27228 32.305 11.852 1 34844 2970 23264 23702 40932 40932 -0.016271512820139833 LPHDVASGL 9 Unmodified _LPHDVASGL_ 0 0 0 ENST00000591661.1_1_18:47801613-47802282:-|nuORF;nc|ENSG00000141644|Q9UIS9-4|MBD1;nc|ENSG00000141644|Q9UIS9-11|MBD1;nc|ENSG00000141644|Q9UIS9-8|MBD1;nc|ENSG00000141644|Q9UIS9-7|MBD1;nc|ENSG00000141644|Q9UIS9-6|MBD1;nc|ENSG00000141644|Q9UIS9-2|MBD1;ENSG00000141644|ENST00000269468|MBD1;nc|ENSG00000141644|Q9UIS9-9|MBD1;nc|ENSG00000141644|Q9UIS9-12|MBD1 ENST00000591661.1_1_18:47801613-47802282:-|nuORF ENST00000591661.1_1_18:47801613-47802282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 454.7455444335938 2 454.745442 907.476331 NaN NaN NaN NaN NaN NaN NaN 44.072 1 39.307 38.807 39.807 -4.7648 0 0 0 0.080768 1 26859 26859 48.346 0 1 34845 5362 23265 23703 40933 40933 0.018892118633857535 LPHEAPELLLL 11 Unmodified _LPHEAPELLLL_ 0 0 0 ENSG00000138135|ENST00000371852|CH25H ENSG00000138135|ENST00000371852|CH25H ENSG00000138135|ENST00000371852|CH25H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.368408203125 2 622.866089 1243.71762 1.8878 0.0011758 -0.74275 -0.00046263 1.145 0.00071319 623.3666881297755 82.051 0.28928 82.113 81.981 82.27 0.062004 19 11 2 0 0 0 0.37677 2 45419 45309;45419 22.736 1.9972 1 3256800 34846 5024 23266 23704 40934;40935 40935 0.10551402779810815 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7921752929688 2 544.792392 1087.57023 0.34509 0.000188 -0.68259 -0.00037187 -0.3375 -0.00018387 544.7918825601632 66.301 0.20657 66.301 66.239 66.446 0 13 8 2 0 0 0 0.2001 1 37035 37035 23.148 0 1 539440 + 34847 21985 23267 23705 40936 40936 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3095703125 2 544.792392 1087.57023 0.34509 0.000188 -0.68259 -0.00037187 -0.3375 -0.00018387 544.7918825601632 66.301 0.20657 66.301 66.239 66.446 0 13 8 2 0 0 0 0.18118 1 36984 36984 18.135 0 1 539440 + 34848 21985 23267 23705 40937 40937 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7924194335938 2 544.792392 1087.57023 0.0093318 5.0839E-06 0.069301 3.7755E-05 0.078633 4.2839E-05 544.7923529701842 66.708 0.62346 66.225 65.946 66.569 -0.48323 114 29 6 0 0 0 0.095405 1 36375 36375 34.102 7.2188 1 87160000 + 34849 21985 23267 23705 40938 40938 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7924194335938 2 544.792392 1087.57023 1.0174 0.00055426 -0.34973 -0.00019053 0.66765 0.00036373 544.7921176851011 66.165 0.67195 66.175 65.973 66.645 0.0095596 120 33 5 0 0 0 0.038285 1 36338 36338 50.855 6.448 1 451440000 + 34850 21985 23267 23705 40939 40939 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.790771484375 2 544.792392 1087.57023 0.88308 0.0004811 -1.6196 -0.00088233 -0.73649 -0.00040124 544.7915337942596 74.791 0.70399 68.616 68.359 69.063 -6.1757 51 37 2 0 0 0 0.06187 1 48974 48974 42.095 7.9921 1 14508000 + 34851 21985 23267 23705 40940 40940 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7929077148438 2 544.792392 1087.57023 0.7824 0.00042625 -0.052126 -2.8398E-05 0.73028 0.00039785 544.7922844974379 80.778 2.4753 74.602 73.304 75.78 -6.1757 372 143 3 0 0 0 0.023164 3 53408 52116;53408;53668 60.39 18.295 1 130670000 + 34852 21985 23267 23705 40941;40942;40943 40942 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MSMS AL20221201_MKP_PDAC_01 4 544.7960815429688 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 78.499 1 72.323 71.823 72.823 -6.1757 0 0 0 0.080768 1 51384 51384 48.346 3.9388 1 + 34853 21985 23267 23705 40944 40944 0.0299493096565584 LPHEGFYIL 9 Unmodified _LPHEGFYIL_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MSMS AL20221201_MKP_PDAC_01 4 544.7920532226562 2 544.792392 1087.57023 NaN NaN NaN NaN NaN NaN NaN 78.981 1 72.805 72.305 73.305 -6.1757 0 0 0 0.060495 1 51735 51735 53.576 6.6547 1 + 34854 21985 23267 23705 40945 40945 0.0299493096565584 LPHEGSSP 8 Unmodified _LPHEGSSP_ 0 0 0 ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D ENSG00000167548|ENST00000301067|KMT2D ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.3948974609375 1 823.394458 822.387182 0.040311 3.3192E-05 -0.40908 -0.00033683 -0.36877 -0.00030364 823.3941487809305 39.558 0.37747 39.558 39.362 39.74 0 29 17 2 0 0 0 0.17881 1 21251 21251 78.445 0 1 4168500 34855 7628 23268 23706 40946 40946 -0.031116230961288238 LPHEGSSP 8 Unmodified _LPHEGSSP_ 0 0 0 ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D ENSG00000167548|ENST00000301067|KMT2D ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.3944091796875 1 823.394458 822.387182 0.68868 0.00056705 0.10014 8.2454E-05 0.78881 0.0006495 823.3947168811478 44.948 0.34411 40.096 39.905 40.249 -4.852 42 22 2 0 0 0 0.2655 2 27397 27397;27528 59.795 0 1 13969000 34856 7628 23268 23706 40947;40948 40947 -0.031116230961288238 LPHEILEM 8 Oxidation (M) _LPHEILEM(Oxidation (M))_ LPHEILEM(1) LPHEILEM(94) 0 0 1 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.256103515625 2 499.254785 996.495018 0.32859 0.00016405 0.56562 0.00028239 0.89421 0.00044644 499.25520614477307 39.756 0.42001 39.756 39.553 39.973 0 72 20 5 0 0 0 0.11943 2 21393 21280;21393 93.883 50.025 1 41065000 34857 5348 23269 23707 40949;40950 40950 984 -0.0033699455705118453 LPHEILEM 8 Oxidation (M) _LPHEILEM(Oxidation (M))_ LPHEILEM(1) LPHEILEM(64) 0 0 1 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.25537109375 2 499.254785 996.495018 0.066087 3.2994E-05 1.2344 0.00061627 1.3005 0.00064926 499.2558856945106 40.04 0.33463 39.743 39.548 39.882 -0.29716 34 15 3 0 0 0 0.24071 2 21100 21100;21207 63.563 34.481 1 5909300 34858 5348 23269 23707 40951;40952 40951 984 -0.0033699455705118453 LPHEILEM 8 Unmodified _LPHEILEM_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2574462890625 2 491.257328 980.500103 -0.12967 -6.3702E-05 -0.80508 -0.0003955 -0.93476 -0.00045921 491.2569892793117 56.355 0.3145 56.355 56.204 56.518 0 18 14 2 0 0 0 0.6895 1 31325 31325 18.135 1.0484 1 2761900 34859 5348 23269 23708 40953 40953 0.009073093055576464 LPHEILEM 8 Unmodified _LPHEILEM_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.25732421875 2 491.257328 980.500103 -0.10304 -5.0619E-05 0.11714 5.7544E-05 0.014095 6.9244E-06 491.2575061765328 56.709 0.21668 56.223 56.153 56.369 -0.48554 20 10 3 0 0 0 0.55032 1 30818 30818 30.225 0 1 3111400 34860 5348 23269 23708 40954 40954 0.009073093055576464 LPHEILEM 8 Unmodified _LPHEILEM_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2584838867188 2 491.257328 980.500103 1.9088 0.00093771 -0.19608 -9.6327E-05 1.7127 0.00084138 491.2571683857313 62.599 0.80752 56.423 56.156 56.964 -6.1757 66 41 2 0 0 0 0.28922 1 40426 40426 56.541 25.905 1 80697000 34861 5348 23269 23708 40955 40955 0.009073093055576464 LPHEIVVNL 9 Unmodified _LPHEIVVNL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3021240234375 2 517.305667 1032.59678 0.61056 0.00031584 -1.7202 -0.00088984 -1.1096 -0.000574 517.3042569203997 62.413 0.27347 61.925 61.788 62.061 -0.48764 29 12 3 0 0 0 0.05447 1 33998 33998 43.858 11.553 1 6342000 34862 2865 23270 23709 40956 40956 0.08178619856994374 LPHFDESTF 9 Unmodified _LPHFDESTF_ 0 0 0 CHD9-CDH11|1|fusion;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9 CHD9-CDH11|1|fusion;nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7548828125 2 546.753464 1091.49238 -0.069534 -3.8018E-05 0.012687 6.9367E-06 -0.056847 -3.1081E-05 546.7536176659004 55.206 0.257 55.206 55.005 55.262 0 19 10 2 0 0 0 0.038285 1 30620 30620 50.855 27.707 1 4060800 34863 8666;61 23271 23710 40957 40957 -0.04971126690384153 LPHFDESTF 9 Unmodified _LPHFDESTF_ 0 0 0 CHD9-CDH11|1|fusion;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9 CHD9-CDH11|1|fusion;nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.753173828125 2 546.753464 1091.49238 -0.096845 -5.295E-05 0.74533 0.00040751 0.64848 0.00035456 546.7531229301222 55.821 0.20927 55.343 55.192 55.401 -0.47798 19 9 3 0 0 0 0.038285 1 30270 30270 50.855 33.913 1 1850400 34864 8666;61 23271 23710 40958 40958 -0.04971126690384153 LPHFFPWSF 9 Unmodified _LPHFFPWSF_ 0 0 0 ENST00000431721.6_1_3:48731584-48731773:-|nuORF;ENST00000432678.6_1_3:48731584-48732558:-|nuORF;nc|ENSG00000068745|Q9UHH9-2|IP6K2 ENST00000431721.6_1_3:48731584-48731773:-|nuORF ENST00000431721.6_1_3:48731584-48731773:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.299560546875 2 589.295102 1176.57565 4.3232 0.0025476 1.4108 0.00083136 5.734 0.003379 589.2961797230716 99.2 0.16835 99.172 99.077 99.246 -0.028282 14 5 3 0 0 0 0.25297 1 55109 55109 19.439 10.846 1 2822300 34865 13267 23272 23711 40959 40959 -0.005573454518753351 LPHFFTYVLD 10 Unmodified _LPHFFTYVLD_ 0 0 0 REV__ENSG00000133056|ENST00000684373|PIK3C2B REV__ENSG00000133056|ENST00000684373|PIK3C2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 626.7854614257812 2 626.324057 1250.63356 0.81102 0.00050796 0.97782 0.00061243 1.7888 0.0011204 626.3259753364131 83.61 0.49368 77.434 77.304 77.798 -6.1757 30 25 2 0 0 0 0.21952 1 55142 55142 15.847 6.8709 1 14513000 + 34866 19902 23273 23712 40960 40960 0.01826871682919773 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1976013183594 3 383.197596 1146.57096 0.55203 0.00021153 -0.0098546 -3.7763E-06 0.54217 0.00020776 383.1975202273573 42.971 0.36541 42.971 42.737 43.102 0 58 18 4 0 0 0 0.36306 2 23351 23233;23351 14.218 4.1234 1 40534000 34867 8957 23274 23713 40961;40962 40962 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2914428710938 2 574.292756 1146.57096 0.87749 0.00050394 -2.7948 -0.001605 -1.9173 -0.0011011 574.290263488274 42.979 0.22956 42.979 42.816 43.046 0 19 11 3 0 0 0 0.08907 1 23317 23317 45.7 26.443 1 9435800 34868 8957 23274 23713 40963 40963 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1978759765625 3 383.197596 1146.57096 0.19137 7.3332E-05 -0.14121 -5.4111E-05 0.050159 1.9221E-05 383.19751649148424 43.226 0.38779 42.916 42.678 43.066 -0.31039 48 18 4 0 0 0 0.13639 2 22921 22921;23026 29.437 2.2139 1 71170000 34869 8957 23274 23713 40964;40965 40964 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2925415039062 2 574.292756 1146.57096 0.34326 0.00019713 -0.78372 -0.00045009 -0.44046 -0.00025295 574.2921730777405 43.216 0.26732 42.906 42.777 43.045 -0.31039 21 12 2 0 0 0 0.0085526 1 22983 22983 118.07 83.667 1 9858700 34870 8957 23274 23713 40966 40966 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.1980285644531 3 383.197596 1146.57096 0.58399 0.00022378 0.50679 0.0001942 1.0908 0.00041798 383.1978050172341 42.849 0.25974 42.841 42.705 42.965 -0.0088196 24 11 3 0 0 0 0.36306 1 22948 22948 14.218 2.0434 1 5832600 34871 8957 23274 23713 40967 40967 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1981506347656 3 383.197596 1146.57096 1.3898 0.00053257 -0.53239 -0.00020401 0.85741 0.00032856 383.19710820046805 48.395 0.81659 43.161 42.851 43.667 -5.2339 120 48 4 0 0 0 0.13639 2 30142 30012;30142 29.437 12.871 1 204960000 34872 8957 23274 23713 40968;40969 40969 0.003537256147183143 LPHFIKDDY 9 Unmodified _LPHFIKDDY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2923583984375 2 574.292756 1146.57096 1.0624 0.00061011 -1.3213 -0.0007588 -0.25891 -0.00014869 574.291797445501 48.401 0.44192 43.167 42.923 43.365 -5.2339 69 26 3 0 0 0 0.02676 2 30072 30072;30203 61.602 29.296 1 88982000 34873 8957 23274 23713 40970;40971 40970 0.003537256147183143 LPHFYKELY 9 Unmodified _LPHFYKELY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.8815612792969 3 403.881608 1208.623 0.83787 0.0003384 -0.58893 -0.00023786 0.24894 0.00010054 403.8813002780837 49.946 0.37859 49.553 49.333 49.711 -0.3923 46 18 3 0 0 0 0.20428 2 26838 26838;26944 27.223 7.5973 1 13649000 34874 9762 23275 23714 40972;40973 40972 0.027028890284782392 LPHFYKELY 9 Unmodified _LPHFYKELY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8814697265625 3 403.881608 1208.623 0.67632 0.00027315 -0.74538 -0.00030105 -0.069066 -2.7895E-05 403.8812329959238 49.663 0.41292 49.614 49.35 49.763 -0.048824 65 20 4 0 0 0 0.19361 2 26857 26748;26857 27.223 12.266 1 20830000 34875 9762 23275 23714 40974;40975 40975 0.027028890284782392 LPHFYKELY 9 Unmodified _LPHFYKELY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8158569335938 2 605.318774 1208.623 0.86825 0.00052557 -2.356 -0.0014261 -1.4877 -0.00090056 605.8183376159892 49.595 0.27203 49.547 49.431 49.703 -0.048828 22 13 2 0 0 0 0.2143 1 26795 26795 21.747 7.8406 1 2015500 34876 9762 23275 23714 40976 40976 0.027028890284782392 LPHFYKELY 9 Unmodified _LPHFYKELY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8811645507812 3 403.881608 1208.623 0.804 0.00032472 -0.29885 -0.0001207 0.50515 0.00020402 403.88155478602766 78.129 0.89561 71.954 71.445 72.341 -6.1757 117 51 3 0 0 0 0.025842 4 51234 50865;50988;51110;51234 46.022 25.608 1 29650000 34877 9762 23275 23714 40977;40978;40979;40980 40980 0.027028890284782392 LPHFYKELY 9 Unmodified _LPHFYKELY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20221201_MKP_PDAC_01 4 605.3184204101562 2 605.318774 1208.623 NaN NaN NaN NaN NaN NaN NaN 78.202 1 72.027 71.527 72.527 -6.1757 0 0 0 0.02218 1 51178 51178 75.761 50.362 1 34878 9762 23275 23714 40981 40981 0.027028890284782392 LPHGAGHLAF 10 Unmodified _LPHGAGHLAF_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2744140625 2 510.274701 1018.53485 NaN NaN NaN NaN NaN NaN NaN 39.327 1 39.04 38.54 39.54 -0.28687 0 0 0 0.11941 1 20741 20741 49.669 17.215 1 34879 10595 23276 23715 40982 40982 0.02632313228525618 LPHGALFTP 9 Unmodified _LPHGALFTP_ 0 0 0 REV__ENSG00000182348|ENST00000333190|ZNF804B REV__ENSG00000182348|ENST00000333190|ZNF804B MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.765869140625 2 476.766178 951.517802 1.1871 0.00056595 -0.55901 -0.00026651 0.62805 0.00029943 476.7653423343511 55.477 0.31499 49.556 49.272 49.587 -5.9211 37 19 2 0 0 0 0.14602 1 35320 35320 28.487 2.1456 1 85291000 + 34880 23266 23277 23716 40983 40983 0.04010392622706149 LPHGFCTVTY 10 Carbamidomethyl (C) _LPHGFC(Carbamidomethyl (C))TVTY_ LPHGFC(1)TVTY LPHGFC(78)TVTY 0 1 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7843627929688 2 597.784241 1193.55393 0.77569 0.0004637 -0.87658 -0.00052401 -0.10089 -6.0309E-05 597.7838679797488 49.502 0.35284 49.109 48.943 49.296 -0.3923 56 17 5 0 0 0 0.017458 2 26573 26573;26675 77.984 34.126 1 110540000 34881 5694 23278 23717 40984;40985 40984 582 -0.03510518262737605 LPHGFCTVTY 10 Carbamidomethyl (C) _LPHGFC(Carbamidomethyl (C))TVTY_ LPHGFC(1)TVTY LPHGFC(78)TVTY 0 1 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.7885131835938 2 597.784241 1193.55393 0.26186 0.00015654 0.21688 0.00012965 0.47874 0.00028618 597.7845519133034 49.166 0.34891 49.123 48.946 49.295 -0.04369 59 16 5 0 0 0 0.017458 2 26507 26507;26604 77.984 34.126 1 72282000 34882 5694 23278 23717 40986;40987 40986 582 -0.03510518262737605 LPHGFCTVTY 10 Carbamidomethyl (C) _LPHGFC(Carbamidomethyl (C))TVTY_ LPHGFC(1)TVTY LPHGFC(78)TVTY 0 1 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7843017578125 2 597.784241 1193.55393 0.62057 0.00037096 -0.59659 -0.00035663 0.023977 1.4333E-05 597.7839369630967 55.209 0.60089 49.288 49.003 49.603 -5.9211 152 37 5 0 0 0 0.017458 3 34932 34932;35101;35234 77.984 31.217 1 892120000 34883 5694 23278 23717 40988;40989;40990 40988 582 -0.03510518262737605 LPHGFCTVTY 10 Carbamidomethyl (C) _LPHGFC(Carbamidomethyl (C))TVTY_ 0 1 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 597.784241 1193.55393 0.073107 4.3702E-05 -0.60792 -0.0003634 -0.53481 -0.0003197 597.7837572909945 49.118 0.1522 49.118 49.042 49.194 0 -0.041779 -0.00014833 NaN 77.984 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1501700 34884 5694 23278 23717 582 -0.03510518262737605 LPHGFCYI 8 Unmodified _LPHGFCYI_ 0 0 0 ENSG00000144668|ENST00000264741|ITGA9 ENSG00000144668|ENST00000264741|ITGA9 ENSG00000144668|ENST00000264741|ITGA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2335815429688 2 475.233656 948.452759 0.15241 7.2433E-05 1.4582 0.00069297 1.6106 0.00076541 475.2344015922591 62.01 0.19258 62.01 61.929 62.122 0 14 7 2 0 0 0 0.80044 1 34635 34635 6.3541 0 1 776370 34885 5630 23279 23718 40991 40991 -0.02352925174795928 LPHGGHKL 8 Unmodified _LPHGGHKL_ 0 0 0 REV__ENST00000464438.1_1_20:62152139-62152717:+|nuORF REV__ENST00000464438.1_1_20:62152139-62152717:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 429.7509460449219 2 429.750862 857.487171 NaN NaN NaN NaN NaN NaN NaN 32.477 1 28.621 28.121 29.121 -3.8562 0 0 0 0.93587 1 18520 18520 13.508 0 1 + 34886 26052 23280 23719 40992 40992 0.052726590283214136 LPHGLGGIGM 10 Unmodified _LPHGLGGIGM_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2601318359375 2 476.257662 950.500772 0.97211 0.00046297 2.7666 0.0013176 3.7387 0.0017806 476.2587755602146 60.136 0.26787 54.022 53.87 54.138 -6.1147 18 13 2 0 0 0 0.14518 1 38661 38661 40.449 15.775 1 14433000 34887 1704 23281 23720 40993 40993 0.02354148745268958 LPHGLIESF 9 Unmodified _LPHGLIESF_ 0 0 0 ENSG00000178605|ENST00000326153|GTPBP6;ENST00000485332.7_1_X:221743-228403:-|nuORF ENSG00000178605|ENST00000326153|GTPBP6 ENSG00000178605|ENST00000326153|GTPBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7766418457031 2 506.776742 1011.53893 0.32257 0.00016347 1.7163 0.00086978 2.0389 0.0010333 506.77743481870453 62.014 0.1918 62.014 61.907 62.099 0 12 7 2 0 0 0 0.18465 1 34572 34572 24.674 11.166 1 818330 34888 8761 23282 23721 40994 40994 0.03362357931564475 LPHGLIESF 9 Unmodified _LPHGLIESF_ 0 0 0 ENSG00000178605|ENST00000326153|GTPBP6;ENST00000485332.7_1_X:221743-228403:-|nuORF ENSG00000178605|ENST00000326153|GTPBP6 ENSG00000178605|ENST00000326153|GTPBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7765197753906 2 506.776742 1011.53893 0.32479 0.00016459 -0.23336 -0.00011826 0.091433 4.6336E-05 506.77652094218485 62.42 0.29305 61.933 61.788 62.081 -0.48764 42 13 4 0 0 0 0.027803 1 34011 34011 56.541 20.497 1 13262000 34889 8761 23282 23721 40995 40995 0.03362357931564475 LPHGNALVRY 10 Unmodified _LPHGNALVRY_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-4|TNRC6A;ENST00000464539.1_1_16:24833345-24835125:+|nuORF nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.54833984375 3 380.548852 1138.62473 -0.25732 -9.7922E-05 -0.16003 -6.0899E-05 -0.41735 -0.00015882 380.5486903204545 34.363 0.1806 34.171 34.046 34.226 -0.19131 10 6 2 0 0 0 0.067957 1 17949 17949 46.022 33.848 1 3022400 34890 1572 23283 23722 40996 40996 0.06095942837100665 LPHGNALVRY 10 Unmodified _LPHGNALVRY_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-4|TNRC6A;ENST00000464539.1_1_16:24833345-24835125:+|nuORF nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5488891601562 3 380.548852 1138.62473 0.13699 5.2133E-05 0.017198 6.5447E-06 0.15419 5.8678E-05 380.5486918807209 34.062 0.29358 34.091 33.973 34.266 0.028934 25 13 3 0 0 0 0.23548 1 17922 17922 27.088 22.191 1 4418000 34891 1572 23283 23722 40997 40997 0.06095942837100665 LPHGNALVRY 10 Unmodified _LPHGNALVRY_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-4|TNRC6A;ENST00000464539.1_1_16:24833345-24835125:+|nuORF nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5491943359375 3 380.548852 1138.62473 0.96521 0.00036731 0.61423 0.00023374 1.5794 0.00060105 380.54897790403 38.439 0.29899 34.07 33.916 34.215 -4.3689 30 18 2 0 0 0 0.10424 1 22656 22656 39.213 27.718 1 21829000 34892 1572 23283 23722 40998 40998 0.06095942837100665 LPHGPPVS 8 Unmodified _LPHGPPVS_ 0 0 0 REV__ENST00000264245.8_2_3:119084181-119087311:+|nuORF REV__ENST00000264245.8_2_3:119084181-119087311:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.4407958984375 1 803.441015 802.433738 0.17366 0.00013953 0.19785 0.00015896 0.37151 0.00029849 803.4411861779406 64.6 0.4733 64.115 63.908 64.381 -0.48512 40 21 2 0 0 0 0.5953 1 35258 35258 26.341 0 1 3136000 + 34893 25065 23284 23723 40999 40999 0.024618615258191312 LPHGSSYSL 9 Unmodified _LPHGSSYSL_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7430725097656 2 480.742899 959.471246 -0.23362 -0.00011231 -0.16604 -7.9823E-05 -0.39967 -0.00019214 480.74265586287885 35.23 0.17506 35.23 35.09 35.265 0 13 8 2 0 0 0 0.03327 1 18597 18597 53.576 17.531 1 2664100 34894 10087 23285 23724 41000 41000 -0.010110919992371237 LPHGSSYSL 9 Unmodified _LPHGSSYSL_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 480.742899 959.471246 0.54509 0.00026205 0.9467 0.00045512 1.4918 0.00071717 480.7434073508233 39.774 0.31153 35.245 35.044 35.356 -4.5294 0.0071645 0.00073054 NaN 53.576 26 19 2 NaN NaN NaN NaN 0 NaN NaN 0 6237900 34895 10087 23285 23724 -0.010110919992371237 LPHHCVRTI 9 Unmodified _LPHHCVRTI_ 0 0 0 REV__ENST00000498989.2_1_14:104149443-104149605:-|nuORF REV__ENST00000498989.2_1_14:104149443-104149605:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7780151367188 2 538.295111 1074.57567 1.0209 0.00054957 2.7304 0.0014698 3.7514 0.0020194 538.2952173822472 36.012 0.27751 31.819 31.741 32.018 -4.1928 21 16 2 0 0 0 0.17666 1 20972 20972 8.5933 0 1 4112600 + 34896 28000 23286 23725 41001 41001 0.04136331276481542 LPHHEPISF 9 Unmodified _LPHHEPISF_ 0 0 0 ENSG00000115297|ENST00000233638|TLX2 ENSG00000115297|ENST00000233638|TLX2 ENSG00000115297|ENST00000233638|TLX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7785034179688 2 538.779816 1075.54508 NaN NaN NaN NaN NaN NaN NaN 20.143 1 20.143 19.643 20.643 0 0 0 0 0.7243 1 10121 10121 8.5933 0.68312 1 34897 3107 23287 23726 41002 41002 0.010328761630944427 LPHHRVIEV 9 Unmodified _LPHHRVIEV_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000572932.1_1_16:16374097-16382502:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5516662597656 3 367.217214 1098.62981 0.014585 5.3559E-06 0.20814 7.6434E-05 0.22273 8.179E-05 367.2171462203548 23.692 0.20148 23.705 23.568 23.77 0.012394 14 9 2 0 0 0 0.082934 1 12074 12074 37.075 19.632 1 3509300 34898 2113 23288 23727 41003 41003 0.08444246699696123 LPHHRVIEV 9 Unmodified _LPHHRVIEV_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000572932.1_1_16:16374097-16382502:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2168273925781 3 367.217214 1098.62981 1.0512 0.00038602 -0.086455 -3.1748E-05 0.96475 0.00035427 367.21704967738054 27.698 0.34758 24.661 24.474 24.822 -3.0365 47 17 3 0 0 0 0.047194 2 15302 15302;15429 46.022 27.649 1 41429000 34899 2113 23288 23727 41004;41005 41004 0.08444246699696123 LPHHYITTI 9 Unmodified _LPHHYITTI_ 0 0 0 REV__nc|ENSG00000214198|Q6P2S7|TTC41P REV__nc|ENSG00000214198|Q6P2S7|TTC41P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.326904296875 2 547.803291 1093.59203 -0.077108 -4.224E-05 -0.30432 -0.00016671 -0.38143 -0.00020895 547.8034943058738 53.367 0.16209 53.303 53.219 53.381 -0.063423 11 7 2 0 0 0 0.18118 1 28951 28951 7.9102 0 1 1417700 + 34900 29937 23289 23728 41006 41006 0.04897735714234841 LPHIPALA 8 Unmodified _LPHIPALA_ 0 0 0 nc|ENSG00000205702|A0A087X1C5|CYP2D7 nc|ENSG00000205702|A0A087X1C5|CYP2D7 nc|ENSG00000205702|A0A087X1C5|CYP2D7 MSMS AL20221201_MKP_PDAC_01 4 416.2584533691406 2 416.257988 830.501424 NaN NaN NaN NaN NaN NaN NaN 108.47 1 102.29 101.79 102.79 -6.1757 0 0 0 0.97444 1 72493 72493 0.79363 0 1 34901 16512 23290 23729 41007 41007 0.07939311456595988 LPHKGQPQM 9 Unmodified _LPHKGQPQM_ 0 0 0 nc|ENSG00000142856|Q13352-2|ITGB3BP nc|ENSG00000142856|Q13352-2|ITGB3BP nc|ENSG00000142856|Q13352-2|ITGB3BP MSMS AL20221201_MKP_PDAC_01 4 518.2748413085938 2 518.273844 1034.53313 NaN NaN NaN NaN NaN NaN NaN 17.964 1 15.378 14.878 15.878 -2.5866 0 0 0 0.17247 1 9436 9436 34.102 18.255 1 34902 16238 23291 23730 41008 41008 0.017249361482754466 LPHKKVPEIF 10 Unmodified _LPHKKVPEIF_ 0 0 0 REV__ENSG00000151388|ENST00000504830|ADAMTS12 REV__ENSG00000151388|ENST00000504830|ADAMTS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3665771484375 2 604.363516 1206.71248 3.8742 0.0023414 -1.2364 -0.00074726 2.6378 0.0015942 604.3626989780021 98.608 0.15241 98.579 98.458 98.61 -0.028282 10 5 2 0 0 0 0.71123 1 54745 54745 1.6526 0.32309 1 1149200 + 34903 21065 23292 23731 41009 41009 0.11739143707836774 LPHLADLVSY 10 Unmodified _LPHLADLVSY_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3077392578125 2 564.308406 1126.60226 0.22287 0.00012577 -0.50324 -0.00028398 -0.28037 -0.00015822 564.3081077783914 70.147 0.64585 69.668 69.223 69.869 -0.47903 107 32 5 0 0 0 0.011274 2 38289 38289;38394 85.357 64.903 1 101400000 34904 2788 23293 23732 41010;41011 41010 0.04402298648801661 LPHLADLVSY 10 Unmodified _LPHLADLVSY_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3086547851562 2 564.308406 1126.60226 0.71241 0.00040202 -0.81515 -0.00045999 -0.10274 -5.7975E-05 564.3078436965382 69.606 0.53228 69.637 69.314 69.846 0.030914 73 29 3 0 0 0 0.092434 2 38141 38141;38250 48.346 28.317 1 128560000 34905 2788 23293 23732 41012;41013 41012 0.04402298648801661 LPHLADLVSY 10 Unmodified _LPHLADLVSY_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.30908203125 2 564.308406 1126.60226 1.3267 0.00074867 -0.36766 -0.00020748 0.95903 0.00054119 564.3081837466501 89.141 1.5333 82.966 81.975 83.508 -6.1757 300 85 5 0 0 0 0.011274 5 58807 58555;58675;58807;58930;59055 85.357 58.473 1 410970000 34906 2788 23293 23732 41014;41015;41016;41017;41018 41016 0.04402298648801661 LPHLAQHKI 9 Unmodified _LPHLAQHKI_ 0 0 0 nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43 nc|ENSG00000198521|P17038-2|ZNF43 nc|ENSG00000198521|P17038-2|ZNF43 MSMS AL20221201_MKP_PDAC_01 4 352.8836669921875 3 352.881943 1055.624 NaN NaN NaN NaN NaN NaN NaN 38.204 1 33.835 33.335 34.335 -4.3689 0 0 0 0.50124 1 22505 22505 10.8 0 1 34907 10101 23294 23733 41019 41019 0.09841148188024818 LPHLELREIGY 11 Unmodified _LPHLELREIGY_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.2506713867188 3 447.250472 1338.72959 1.3534 0.00060532 0.22753 0.00010176 1.5809 0.00070708 447.2507793989605 86.466 0.49611 80.291 79.977 80.473 -6.1757 41 26 2 0 0 0 0.13728 1 56930 56930 38.161 21.886 1 11652000 34908 4494 23295 23734 41020 41020 0.07377019523005401 LPHLFFTI 8 Unmodified _LPHLFFTI_ 0 0 0 REV__ENST00000392179.4_1_1:161183807-161183942:+|nuORF REV__ENST00000392179.4_1_1:161183807-161183942:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2535705566406 2 494.286746 986.558939 0.97933 0.00048407 -0.72702 -0.00035935 0.25231 0.00012471 494.2867186498934 52.629 0.63438 46.895 46.635 47.269 -5.7345 65 34 2 0 0 0 8.7369 1 33170 33170 20.871 2.7362 1 75532000 + 34909 26386 23296 23735 41021 41021 0.06512153662174569 LPHLGRLTF 9 Unmodified _LPHLGRLTF_ 0 0 0 ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENSG00000206190|ENST00000555815|ATP10A ENSG00000206190|ENST00000555815|ATP10A MSMS AL20221201_MKP_PDAC_01 4 527.31396484375 2 527.313826 1052.6131 NaN NaN NaN NaN NaN NaN NaN 94.777 1 88.601 88.101 89.101 -6.1757 0 0 0 0.58748 1 62777 62777 13.508 2.3934 1 34910 10395 23297 23736 41022 41022 0.08889745813735317 LPHLQVVGL 9 Unmodified _LPHLQVVGL_ 0 0 0 nc|ENSG00000181038|Q86XA0-2|METTL23;ENST00000589581.1_1_17:74725774-74729332:+|nuORF;ENSG00000181038|ENST00000341249|METTL23 nc|ENSG00000181038|Q86XA0-2|METTL23 nc|ENSG00000181038|Q86XA0-2|METTL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.304443359375 2 488.302927 974.591301 0.72854 0.00035575 -3.295 -0.0016089 -2.5664 -0.0012532 488.30106711479294 69.291 0.30176 69.322 69.051 69.353 0.030914 28 14 3 0 0 0 0.026094 1 38032 38032 57.471 25.018 1 3709900 34911 8946 23298 23737 41023 41023 0.10298941065184408 LPHLRDELF 9 Unmodified _LPHLRDELF_ 0 0 0 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5454711914062 3 380.545108 1138.61349 -0.33904 -0.00012902 -1.2241 -0.00046583 -1.5632 -0.00059485 380.54469019322323 55.974 0.26092 55.496 55.34 55.601 -0.47798 27 12 3 0 0 0 0.19361 1 30374 30374 23.79 6.6769 1 4527400 34912 16108 23299 23738 41024 41024 0.04973120742943138 LPHLWLDPF 9 Unmodified _LPHLWLDPF_ 0 0 0 REV__ENSG00000239305|ENST00000237455|RNF103 REV__ENSG00000239305|ENST00000237455|RNF103 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.808837890625 2 569.30821 1136.60187 -0.18064 -0.00010284 -4.3465 -0.0024745 -4.5272 -0.0025774 569.3060133789272 53.54 0.13283 53.477 53.402 53.534 -0.063423 13 6 3 0 0 0 0.19298 1 29059 29059 13.508 0 1 3118700 + 34913 24436 23300 23739 41025 41025 0.039029237196018585 LPHMHNIVEY 10 Unmodified _LPHMHNIVEY_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2092895507812 3 418.209619 1251.60703 0.16203 6.7762E-05 0.046389 1.94E-05 0.20842 8.7163E-05 418.2097243329206 43.083 0.31708 42.773 42.568 42.885 -0.31039 30 14 3 0 0 0 0.46077 1 22887 22887 18.373 13.657 1 13040000 34914 1364 23301 23740 41026 41026 -0.008711404800806122 LPHMHNIVEY 10 Unmodified _LPHMHNIVEY_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.210205078125 3 418.209619 1251.60703 1.2973 0.00054255 -0.57202 -0.00023922 0.72529 0.00030332 418.20954261219725 48.405 0.51358 43.171 42.87 43.384 -5.2339 95 30 4 0 0 0 0.25982 3 30132 30008;30132;30263 29.841 18.942 1 162360000 34915 1364 23301 23740 41027;41028;41029 41028 -0.008711404800806122 LPHMHNIVEY 10 Unmodified _LPHMHNIVEY_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8111572265625 2 626.81079 1251.60703 0.81577 0.00051133 0.42616 0.00026712 1.2419 0.00077846 626.8107319297602 48.415 0.44192 43.181 42.923 43.365 -5.2339 71 26 4 0 0 0 0.040614 2 30048 30048;30177 82.529 24.807 1 112550000 34916 1364 23301 23740 41030;41031 41030 -0.008711404800806122 LPHMHNIVEY 10 Oxidation (M) _LPHM(Oxidation (M))HNIVEY_ LPHM(1)HNIVEY LPHM(52)HNIVEY 0 0 1 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8092041015625 2 634.808248 1267.60194 0.80561 0.00051141 0.75891 0.00048176 1.5645 0.00099317 634.8081485540141 35.663 0.42834 31.47 31.235 31.664 -4.1928 61 26 3 0 0 0 0.077785 1 20798 20798 51.63 32.268 1 27952000 34917 1364 23301 23741 41032 41032 229 -0.02115444342689443 LPHNEIAAQI 10 Unmodified _LPHNEIAAQI_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;ENST00000523482.5_1_8:20054917-20070443:+|nuORF;ATP6V1B2|p.G196E|1|0.1|ENSG00000147416|chr8:20211300-20211300|G/A|missense_variant ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3040771484375 2 553.303655 1104.59276 0.7336 0.0004059 -0.016398 -9.0728E-06 0.7172 0.00039683 553.3038651635559 28.425 0.19997 28.363 28.273 28.473 -0.06216 13 7 3 0 0 0 0.42068 1 14679 14679 20.454 0.039092 1 2674600 34918 5847 23302 23742 41033 41033 0.04464530363270569 LPHNRLVSL 9 Unmodified _LPHNRLVSL_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3182983398438 2 524.816733 1047.61891 0.26153 0.00013726 0.75213 0.00039473 1.0137 0.00053199 524.8170767032226 39.61 0.24583 39.622 39.509 39.755 0.011452 26 11 3 0 0 0 0.085319 1 21075 21075 36.506 17.249 1 3751700 34919 6992 23303 23743 41034 41034 0.09700844325402613 LPHNRLVSL 9 Unmodified _LPHNRLVSL_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8182983398438 2 524.816733 1047.61891 0.68305 0.00035848 -0.032722 -1.7173E-05 0.65033 0.0003413 524.8166814313605 44.506 0.28693 39.653 39.528 39.815 -4.852 28 22 2 0 0 0 0.029718 1 27179 27179 55.503 26.421 1 15512000 34920 6992 23303 23743 41035 41035 0.09700844325402613 LPHNYHIDF 9 Unmodified _LPHNYHIDF_ 0 0 0 nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF;ENSG00000118246|ENST00000402774|FASTKD2;ENST00000471788.1_1_2:207651391-207655428:+|nuORF nc|ENSG00000118246|Q9NYY8-2|FASTKD2 nc|ENSG00000118246|Q9NYY8-2|FASTKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8580017089844 3 385.857574 1154.55089 0.59255 0.00022864 -0.23511 -9.072E-05 0.35743 0.00013792 385.8572609695391 46.612 0.27388 46.275 46.093 46.367 -0.33664 15 13 2 0 0 0 0.35911 1 24952 24952 14.405 6.7964 1 3769200 34921 3361 23304 23744 41036 41036 -0.020200253252596667 LPHPFGLTQY 10 Unmodified _LPHPFGLTQY_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;ENSG00000070018|ENST00000261349|LRP6 PPP6R3-LRP5|3|fusion;ENSG00000070018|ENST00000261349|LRP6 PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8089599609375 2 586.808574 1171.60259 0.50579 0.0002968 -0.49174 -0.00028856 0.014044 8.2414E-06 586.8083750999365 61.223 0.31625 61.18 61.008 61.324 -0.04351 39 15 3 0 0 0 0.017458 1 33387 33387 77.984 13.748 1 15042000 34922 16693;1015 23305 23745 41037 41037 0.02365718368673697 LPHPHFLK 8 Unmodified _LPHPHFLK_ 0 0 0 nc|ENSG00000115459|Q96FG2-6|ELMOD3 nc|ENSG00000115459|Q96FG2-6|ELMOD3 nc|ENSG00000115459|Q96FG2-6|ELMOD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.7281494140625 2 494.789987 987.565421 0.16951 8.3871E-05 -1.506 -0.00074516 -1.3365 -0.00066129 494.789604740492 24.872 0.28017 21.989 21.852 22.133 -2.8831 38 18 3 0 0 0 8.7369 1 13577 13577 10.183 0 1 6944200 34923 16137 23306 23746 41038 41038 0.07114091613561868 LPHPHHHPHL 10 Unmodified _LPHPHHHPHL_ 0 0 0 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8836669921875 3 407.884458 1220.63154 NaN NaN NaN NaN NaN NaN NaN 30.772 1 30.772 30.272 31.272 0 0 0 0 0.91954 1 16001 16001 7.1017 1.699 1 34924 1304 23307 23747 41039 41039 0.030053005083118478 LPHPHHQVL 9 Unmodified _LPHPHHQVL_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MSMS AL20221201_MKP_PDAC_01 4 359.8705749511719 3 359.869926 1076.58795 NaN NaN NaN NaN NaN NaN NaN 23.153 1 20.374 19.874 20.874 -2.7784 0 0 0 0.43505 1 12509 12509 17.113 3.2068 1 34925 7828 23308 23748 41040 41040 0.052716910111939796 LPHPHHQVL 9 Unmodified _LPHPHHQVL_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.5282287597656 3 359.869926 1076.58795 0.79638 0.00028659 -0.56392 -0.00020294 0.23245 8.3653E-05 359.87034822539493 23.125 0.12645 20.347 20.232 20.359 -2.7784 12 7 2 0 0 0 0.19994 1 12442 12442 12.241 4.0851 1 2801900 34926 7828 23308 23748 41041 41041 0.052716910111939796 LPHPLPGLL 9 Unmodified _LPHPLPGLL_ 0 0 0 ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.800048828125 2 478.80002 955.585488 0.62983 0.00030156 0.53106 0.00025427 1.1609 0.00055583 478.80009527632905 68.912 0.27378 68.937 68.793 69.067 0.025154 26 12 3 0 0 0 0.016115 1 37885 37885 67.413 11.365 1 2008600 34927 11561 23309 23749 41042 41042 0.10591842553515107 LPHPWVPQW 9 Unmodified _LPHPWVPQW_ 0 0 0 ENST00000472654.1_1_X:48933860-48934482:-|nuORF ENST00000472654.1_1_X:48933860-48934482:-|nuORF ENST00000472654.1_1_X:48933860-48934482:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2069396972656 3 387.206426 1158.59745 NaN NaN NaN NaN NaN NaN NaN 32.587 1 32.617 32.117 33.117 0.029743 0 0 0 0.84369 1 17114 17114 1.1933 0.41681 1 34928 13912 23310 23750 41043 41043 0.024494592967130302 LPHQIKDIL 9 Unmodified _LPHQIKDIL_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.5536499023438 3 359.553603 1075.63898 0.80781 0.00029045 0.22931 8.2449E-05 1.0371 0.0003729 359.5535546850316 50.078 0.26244 49.686 49.568 49.83 -0.3923 26 12 3 0 0 0 0.26811 1 26962 26962 18.721 4.3158 1 2023400 34929 4243 23311 23751 41044 41044 0.1041859526535518 LPHQIKDIL 9 Unmodified _LPHQIKDIL_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 359.553603 1075.63898 0.96511 0.00034701 0.27292 9.8129E-05 1.238 0.00044514 359.5533468142718 49.728 0.20078 49.679 49.626 49.827 -0.048828 -0.0019722 0.00028891 NaN 18.721 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 576080 34930 4243 23311 23751 0.1041859526535518 LPHQIKDIL 9 Unmodified _LPHQIKDIL_ 0 0 0 nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 nc|ENSG00000130713|Q13868-3|EXOSC2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 359.553603 1075.63898 1.7972 0.00064618 -0.86158 -0.00030978 0.93559 0.00033639 359.5534065342657 55.599 0.24548 49.678 49.507 49.753 -5.9211 -0.0028329 -0.00093483 NaN 18.721 15 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3446100 34931 4243 23311 23751 0.1041859526535518 LPHRGPGL 8 Unmodified _LPHRGPGL_ 0 0 0 ENST00000378825.4_2_10:13040506-13043490:-|nuORF ENST00000378825.4_2_10:13040506-13043490:-|nuORF ENST00000378825.4_2_10:13040506-13043490:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.7509155273438 2 423.750862 845.487171 0.099197 4.2035E-05 0.11987 5.0796E-05 0.21907 9.283E-05 423.7508968587453 33.758 0.31921 33.787 33.562 33.881 0.028931 20 13 2 0 0 0 0.55032 1 17751 17751 30.225 5.5509 1 4058800 34932 12553 23312 23752 41045 41045 0.058246590283374644 LPHRGPGL 8 Unmodified _LPHRGPGL_ 0 0 0 ENST00000378825.4_2_10:13040506-13043490:-|nuORF ENST00000378825.4_2_10:13040506-13043490:-|nuORF ENST00000378825.4_2_10:13040506-13043490:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 423.750862 845.487171 -0.26502 -0.0001123 1.7285 0.00073247 1.4635 0.00062016 423.751399703783 34.007 0.17125 33.816 33.718 33.89 -0.19131 0.01437 0.0011806 NaN 30.225 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 716230 34933 12553 23312 23752 0.058246590283374644 LPHRGSPL 8 Unmodified _LPHRGSPL_ 0 0 0 REV__ENST00000466772.5_1_22:21065465-21081626:-|nuORF REV__ENST00000466772.5_1_22:21065465-21081626:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7559204101562 2 438.756144 875.497735 0.0066777 2.9299E-06 -0.19268 -8.4539E-05 -0.186 -8.1609E-05 438.7559444632243 31.84 0.31742 31.87 31.692 32.009 0.030106 34 14 3 0 0 0 0.79669 1 16776 16776 8.5933 0 1 31677000 + 34934 27416 23313 23753 41046 41046 0.05500641682760943 LPHRNPLL 8 Unmodified _LPHRNPLL_ 0 0 0 REV__ENST00000461188.5_1_20:418082-418334:-|nuORF REV__ENST00000461188.5_1_20:418082-418334:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2932739257812 2 480.292894 958.571235 1.1268 0.00054117 -0.64695 -0.00031072 0.47981 0.00023045 480.2925162658409 38.043 0.39976 33.674 33.456 33.855 -4.3689 58 23 3 0 0 0 0.44122 1 22479 22479 40.449 4.4044 1 52058000 + 34935 27311 23314 23754 41047 41047 0.0902919012522716 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8894958496094 3 380.888986 1139.64513 -0.25347 -9.6542E-05 1.3139 0.00050044 1.0604 0.0004039 380.8894729562063 34.022 0.30483 33.831 33.668 33.972 -0.19131 36 11 4 0 0 0 0.20507 1 17726 17726 22.658 6.509 1 15817000 34936 7443 23315 23755 41048 41048 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8304443359375 2 570.82984 1139.64513 -0.096839 -5.5278E-05 1.4278 0.00081503 1.331 0.00075976 570.8307458322237 34.022 0.2501 33.831 33.694 33.944 -0.19131 25 9 4 0 0 0 0.030212 1 17740 17740 43.772 26.659 1 4140900 34937 7443 23315 23755 41049 41049 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8888854980469 3 380.888986 1139.64513 0.079556 3.0302E-05 0.46224 0.00017606 0.5418 0.00020636 380.889147194333 33.751 0.39039 33.78 33.582 33.973 0.028934 54 16 5 0 0 0 0.14594 2 17732 17732;17833 28.495 13.246 1 89916000 34938 7443 23315 23755 41050;41051 41050 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.830078125 2 570.82984 1139.64513 0.10446 5.9628E-05 0.79759 0.00045529 0.90205 0.00051492 570.8302267096147 33.751 0.30639 33.78 33.625 33.931 0.028934 38 12 4 0 0 0 0.01085 2 17734 17734;17837 75.761 31.903 1 19527000 34939 7443 23315 23755 41052;41053 41052 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8890991210938 3 380.888986 1139.64513 1.4764 0.00056236 -0.65592 -0.00024983 0.82052 0.00031253 380.8887583512364 38.037 0.49723 33.668 33.419 33.916 -4.3689 104 29 4 0 0 0 0.43515 2 22410 22281;22410 10.8 5.752 1 272910000 34940 7443 23315 23755 41054;41055 41055 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8301391601562 2 570.82984 1139.64513 1.1324 0.00064641 -0.76102 -0.00043441 0.37138 0.000212 570.8294359496131 38.014 0.4329 33.645 33.437 33.87 -4.3689 82 25 4 0 0 0 0.0094802 2 22292 22292;22422 89.401 45.542 1 104560000 34941 7443 23315 23755 41056;41057 41056 0.08089113496907885 LPHRTQILY 9 Unmodified _LPHRTQILY_ 0 0 0 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MSMS AL20221201_MKP_PDAC_01 4 380.8890686035156 3 380.888986 1139.64513 NaN NaN NaN NaN NaN NaN NaN 38.258 1 33.889 33.389 34.389 -4.3689 0 0 0 0.56988 1 22544 22544 13.615 6.0059 1 34942 7443 23315 23755 41058 41058 0.08089113496907885 LPHSAAYPFL 10 Unmodified _LPHSAAYPFL_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2973022460938 2 558.297842 1114.58113 1.1187 0.00062459 -1.0554 -0.00058924 0.063329 3.5356E-05 558.2971631685558 52.929 0.5133 47.124 46.906 47.419 -5.8042 41 28 2 0 0 0 0.24625 1 33602 33602 30.637 6.616 1 38053000 34943 2170 23316 23756 41059 41059 0.028423333399359763 LPHSATVTL 9 Unmodified _LPHSATVTL_ 0 0 0 ENSG00000054611|ENST00000337137|TBC1D22A;nc|ENSG00000054611|Q8WUA7-3|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A ENSG00000054611|ENST00000337137|TBC1D22A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7686462402344 2 469.768917 937.523281 -0.20204 -9.4914E-05 -0.36718 -0.00017249 -0.56922 -0.0002674 469.7687143967996 41.552 0.26909 41.249 41.067 41.337 -0.30304 32 11 4 0 0 0 0.0086179 1 21972 21972 89.427 18.711 1 37901000 34944 762 23317 23757 41060 41060 0.052020714145328384 LPHSGEAQL 9 Unmodified _LPHSGEAQL_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2482299804688 2 476.248349 950.482145 -0.52325 -0.0002492 0.93346 0.00044456 0.4102 0.00019536 476.24885654931546 27.711 0.22902 27.711 27.596 27.825 0 18 10 2 0 0 0 0.16226 1 14277 14277 26.884 5.137 1 2970000 34945 16395 23318 23758 41061 41061 0.004923103750343216 LPHSGGVDVHF 11 Unmodified _LPHSGGVDVHF_ 0 0 0 nc|ENSG00000077713|Q8WUT9-2|SLC25A43;ENSG00000077713|ENST00000217909|SLC25A43 nc|ENSG00000077713|Q8WUT9-2|SLC25A43 nc|ENSG00000077713|Q8WUT9-2|SLC25A43 MSMS AL20221201_MKP_PDAC_01 4 388.8656921386719 3 388.864729 1163.57236 NaN NaN NaN NaN NaN NaN NaN 46.399 1 41.318 40.818 41.818 -5.0805 0 0 0 0.69464 1 28650 28650 17.863 5.6225 1 34946 1225 23319 23759 41062 41062 -0.002886402965259549 LPHSKNEITF 10 Unmodified _LPHSKNEITF_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8804931640625 3 395.880267 1184.61897 -0.42988 -0.00017018 -0.36476 -0.0001444 -0.79464 -0.00031458 395.8801771024679 35.893 0.25237 35.671 35.519 35.772 -0.2224 25 10 3 0 0 0 0.16524 1 18794 18794 26.021 9.4548 1 5304600 34947 3369 23320 23760 41063 41063 0.034047995347464166 LPHSKNEITF 10 Unmodified _LPHSKNEITF_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 395.880267 1184.61897 -0.10822 -4.2841E-05 -0.044115 -1.7464E-05 -0.15233 -6.0305E-05 395.8804192149976 35.743 0.22258 35.743 35.635 35.858 0 0.035949 0.00019392 NaN 26.021 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3319200 34948 3369 23320 23760 0.034047995347464166 LPHSMRIFY 9 Unmodified _LPHSMRIFY_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L;nc|ENSG00000129317|Q9H0K6-2|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5394897460938 3 388.539188 1162.59573 1.017 0.00039513 -0.26915 -0.00010458 0.74781 0.00029055 388.53896865677837 82.093 0.81984 75.917 75.395 76.215 -6.1757 60 45 2 0 0 0 0.078314 2 53866 53713;53866 29.437 20.461 1 12889000 34949 4130 23321 23761 41064;41065 41065 0.020940822164448036 LPHSQADQY 9 Unmodified _LPHSQADQY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000504568.5_1_4:980881-994673:+|nuORF;ENST00000506561.5_1_4:980866-994923:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7493896484375 2 529.748713 1057.48287 NaN NaN NaN NaN NaN NaN NaN 20.699 1 20.699 20.199 21.199 0 0 0 0 0.70001 1 10428 10428 9.3831 4.1525 1 34950 4005 23322 23762 41066 41066 -0.04356894975899195 LPHSSCELLY 10 Carbamidomethyl (C) _LPHSSC(Carbamidomethyl (C))ELLY_ LPHSSC(1)ELLY LPHSSC(71)ELLY 0 1 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.7966918945312 2 609.794806 1217.57506 1.0807 0.000659 -0.44448 -0.00027104 0.63621 0.00038796 609.7944826447123 53.65 0.38793 47.846 47.693 48.081 -5.8042 58 24 3 0 0 0 0.024981 2 33893 33893;34033 71.134 35.007 1 50440000 34951 1104 23323 23763 41067;41068 41067 97 -0.02502552953887971 LPHSSPPTF 9 Unmodified _LPHSSPPTF_ 0 0 0 ENST00000440083.6_1_12:6451126-6451249:-|nuORF ENST00000440083.6_1_12:6451126-6451249:-|nuORF ENST00000440083.6_1_12:6451126-6451249:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2664794921875 2 491.753267 981.491981 0.97618 0.00048004 -0.74638 -0.00036704 0.2298 0.000113 491.752774482561 49.768 0.29333 49.376 49.238 49.532 -0.3923 35 14 3 0 0 0 0.18118 1 26736 26736 18.135 4.6271 1 6180100 34952 13383 23324 23764 41069 41069 0.0004949838044012722 LPHSSRLKRL 10 Unmodified _LPHSSRLKRL_ 0 0 0 ENST00000263979.7_1_1:25944342-25980780:+|nuORF;ENSG00000117643|ENST00000374332|MAN1C1 ENST00000263979.7_1_1:25944342-25980780:+|nuORF ENST00000263979.7_1_1:25944342-25980780:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9191589355469 3 402.919168 1205.73567 0.3155 0.00012712 -0.10197 -4.1087E-05 0.21352 8.6032E-05 402.91926468815416 85.284 1.0891 79.108 78.657 79.746 -6.1757 120 65 2 0 0 0 0.46077 1 56095 56095 18.373 0.93045 1 40500000 34953 3329 23325 23765 41070 41070 0.14103582545203608 LPHSSTPAL 9 Unmodified _LPHSSTPAL_ 0 0 0 ENSG00000141664|ENST00000269499|ZCCHC2;nc|ENSG00000141664|Q9C0B9-2|ZCCHC2 ENSG00000141664|ENST00000269499|ZCCHC2 ENSG00000141664|ENST00000269499|ZCCHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7532653808594 2 461.753267 921.491981 0.081391 3.7583E-05 -0.36643 -0.0001692 -0.28503 -0.00013162 461.7529982433675 33.434 0.1282 33.434 33.327 33.455 0 9 6 2 0 0 0 0.03327 1 17525 17525 53.576 2.7205 1 5407800 34954 5364 23326 23766 41071 41071 0.028094983804294316 LPHTDFTL 8 Unmodified _LPHTDFTL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2479248046875 2 472.247818 942.481082 -0.23555 -0.00011124 0.12003 5.6684E-05 -0.11552 -5.4554E-05 472.24779798331616 56.677 0.25422 56.192 56.136 56.39 -0.48554 20 12 2 0 0 0 0.19755 1 30803 30803 70.865 26.458 1 4155700 34955 8793 23327 23767 41072 41072 0.007540960061533042 LPHTDFTL 8 Unmodified _LPHTDFTL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2492370605469 2 472.247818 942.481082 1.0581 0.00049967 0.58906 0.00027818 1.6471 0.00077785 472.24798509159234 62.342 0.34148 56.166 56.021 56.362 -6.1757 28 18 2 0 0 0 0.35156 1 40231 40231 49.669 2.748 1 22094000 34956 8793 23327 23767 41073 41073 0.007540960061533042 LPHTDFTL 8 Unmodified _LPHTDFTL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 472.247818 942.481082 1.0581 0.00049967 0.58906 0.00027818 1.6471 0.00077785 472.24798509159234 62.342 0.34148 56.166 56.021 56.362 -6.1757 -0.012843 0.00021423 NaN 70.865 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 22094000 34957 8793 23327 23767 0.007540960061533042 LPHTDHLVGY 10 Unmodified _LPHTDHLVGY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5323791503906 3 384.532979 1150.57711 -0.46128 -0.00017738 -0.39006 -0.00014999 -0.85134 -0.00032737 384.5325029158969 36.016 0.1675 35.793 35.665 35.832 -0.2224 15 7 3 0 0 0 0.52888 1 18891 18891 8.9762 0 1 5935400 34958 7776;16369 23328 23768 41074 41074 0.00784243846260324 LPHTDHLVGY 10 Unmodified _LPHTDHLVGY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MSMS AL20221201_MKP_PDAC_01 4 576.2966918945312 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 40.869 1 36.261 35.761 36.761 -4.6079 0 0 0 0.16406 1 24462 24462 46.021 24.484 1 34959 7776;16369 23328 23768 41075 41075 0.00784243846260324 LPHTDHLVGY 10 Unmodified _LPHTDHLVGY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5825500488281 3 384.532979 1150.57711 1.5941 0.00061297 0.33934 0.00013049 1.9334 0.00074346 384.5329767003296 40.834 0.41238 36.305 36.082 36.494 -4.5294 55 25 3 0 0 0 0.2342 1 24389 24389 6.6304 1.3335 1 24039000 34960 7776;16369 23328 23768 41076 41076 0.00784243846260324 LPHTDTNMN 9 Unmodified _LPHTDTNMN_ 0 0 0 ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENST00000465151.5_1_2:85766338-85768324:+|nuORF ENST00000469221.5_1_2:85766338-85768508:+|nuORF ENST00000469221.5_1_2:85766338-85768508:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2794189453125 2 521.734748 1041.45494 0.445 0.00023217 -0.57085 -0.00029783 -0.12584 -6.5656E-05 521.7343816440884 47.146 0.33399 47.146 46.98 47.314 0 31 15 3 0 0 0 0.21367 1 25738 25738 4.756 0.42677 1 2960400 34961 13829 23329 23769 41077 41077 -0.06412541227632573 LPHTGYIY 8 Unmodified _LPHTGYIY_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2503662109375 2 482.25036 962.486168 0.19347 9.33E-05 0.91075 0.00043921 1.1042 0.00053251 482.2504013630863 42.523 0.27914 42.216 42.081 42.36 -0.30682 22 13 2 0 0 0 0.19755 1 22597 22597 70.865 14.323 1 25954000 34962 2342 23330 23770 41078 41078 0.003423998687480889 LPHTGYIY 8 Unmodified _LPHTGYIY_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2506408691406 2 482.25036 962.486168 1.312 0.00063274 -0.33465 -0.00016138 0.9774 0.00047135 482.2502077312612 47.4 0.47425 42.166 41.946 42.42 -5.2339 75 28 3 0 0 0 0.19755 3 29420 29293;29420;29559 70.865 14.323 1 102890000 34963 2342 23330 23770 41079;41080;41081 41080 0.003423998687480889 LPHTSGDP 8 Unmodified _LPHTSGDP_ 0 0 0 SLC3A1|p.Q63Pfs*73|1|0.15|ENSG00000138079|chr2:44275720-44275721|-/C|frameshift_variant SLC3A1|p.Q63Pfs*73|1|0.15|ENSG00000138079|chr2:44275720-44275721|-/C|frameshift_variant SLC3A1|p.Q63Pfs*73|1|0.15|ENSG00000138079|chr2:44275720-44275721|-/C|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.3938598632812 1 823.394458 822.387182 0.040311 3.3192E-05 -0.40908 -0.00033683 -0.36877 -0.00030364 823.3941487809305 39.558 0.37747 39.558 39.362 39.74 0 29 17 2 0 0 0 0.2655 1 21135 21135 59.795 0 1 4168500 34964 30164 23331 23771 41082 41082 -0.031116230961401925 LPHTVLTSL 9 Unmodified _LPHTVLTSL_ 0 0 0 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 ENSG00000173456|ENST00000311413|RNF26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7903137207031 2 490.792392 979.570232 1.329 0.00065228 0.18395 9.0281E-05 1.513 0.00074256 490.7923598326837 64.028 1.1442 57.852 57.306 58.45 -6.1757 148 62 4 0 0 0 0.0048787 1 41242 41242 117.6 46.883 1 131150000 34965 8327 23332 23772 41083 41083 0.07962930965663872 LPHVDQVTL 9 Unmodified _LPHVDQVTL_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2866516113281 2 511.287474 1020.5604 0.29372 0.00015017 -0.19376 -9.9067E-05 0.099956 5.1106E-05 511.2868693699929 52.605 0.25543 52.172 52.003 52.259 -0.43367 20 12 2 0 0 0 0.10734 1 28412 28412 32.305 16.458 1 2137200 34966 7148 23333 23773 41084 41084 0.050937429602981865 LPHVDQVTL 9 Unmodified _LPHVDQVTL_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2887573242188 2 511.287474 1020.5604 1.2966 0.00066295 -1.031 -0.00052712 0.26566 0.00013583 511.2869211710971 58.864 0.30035 52.79 52.635 52.935 -6.0745 26 16 2 0 0 0 0.03568 1 37712 37712 52.268 8.4101 1 18361000 34967 7148 23333 23773 41085 41085 0.050937429602981865 LPHVDQVTL 9 Unmodified _LPHVDQVTL_ 0 0 0 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 ENSG00000164151|ENST00000296564|ICE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.287474 1020.5604 -0.030079 -1.5379E-05 -0.14672 -7.5018E-05 -0.1768 -9.0398E-05 511.28737272622845 52.118 0.22726 52.118 52.016 52.243 0 -0.026816 2.223E-05 NaN 32.305 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1837000 34968 7148 23333 23773 0.050937429602981865 LPHVFQRM 8 Unmodified _LPHVFQRM_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25;ENST00000457820.1_2_1:210015927-210016041:+|nuORF ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2601318359375 2 514.278929 1026.54331 0.38235 0.00019664 -0.74748 -0.00038441 -0.36512 -0.00018778 514.2785258090839 46.452 0.40768 41.372 41.051 41.458 -5.0805 43 31 2 0 0 0 0.64035 1 28768 28768 22.453 4.3063 1 23430000 34969 3322 23334 23774 41086 41086 0.031095438734837444 LPHVGVSDF 9 Unmodified _LPHVGVSDF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.753173828125 2 485.753267 969.491981 0.47905 0.0002327 0.65849 0.00031986 1.1375 0.00055256 485.75356064844925 53.011 0.30796 53.011 52.858 53.166 0 35 14 3 0 0 0 0.012158 1 29362 29362 74.396 36.245 1 9037400 34970 681 23335 23775 41087 41087 0.006014983804334406 LPHVGVSDF 9 Unmodified _LPHVGVSDF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7534484863281 2 485.753267 969.491981 0.59267 0.00028789 -0.07722 -3.751E-05 0.51545 0.00025038 485.75322384062815 53.602 0.33879 53.151 52.922 53.261 -0.45173 43 16 3 0 0 0 0.0086629 1 28954 28954 101.72 61.273 1 8361300 34971 681 23335 23775 41088 41088 0.006014983804334406 LPHVGVSDF 9 Unmodified _LPHVGVSDF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7537231445312 2 485.753267 969.491981 0.90914 0.00044162 0.30906 0.00015013 1.2182 0.00059174 485.75322908697757 59.671 0.49419 53.556 53.286 53.78 -6.1147 42 27 3 0 0 0 0.0086179 1 38339 38339 89.427 47.332 1 64577000 34972 681 23335 23775 41089 41089 0.006014983804334406 LPHVGVSDF 9 Unmodified _LPHVGVSDF_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.753267 969.491981 0.55672 0.00027043 -2.1857 -0.0010617 -1.629 -0.0007913 485.75232107615193 53.67 0.23591 53.67 53.584 53.82 0 0.05682 -0.0018708 NaN 89.427 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2358800 34973 681 23335 23775 0.006014983804334406 LPHVGYLY 8 Unmodified _LPHVGYLY_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2615661621094 2 481.260728 960.506903 NaN NaN NaN NaN NaN NaN NaN 56.077 1 56.008 55.508 56.508 -0.068737 0 0 0 0.78208 1 30490 30490 24.21 0 1 34974 7063 23336 23776 41090 41090 0.02506990248434704 LPHVGYLY 8 Unmodified _LPHVGYLY_ 0 0 0 ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF ENSG00000163755|ENST00000296051|HPS3 ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2613830566406 2 481.260728 960.506903 0.45367 0.00021833 4.2908 0.002065 4.7445 0.0022833 481.261363366552 62.078 0.39898 55.902 55.674 56.073 -6.1757 60 22 4 0 0 0 0.42709 2 40105 39957;40105 41.817 9.3636 1 54406000 34975 7063 23336 23776 41091;41092 41092 0.02506990248434704 LPHVHTVSY 9 Unmodified _LPHVHTVSY_ 0 0 0 nc|ENSG00000166340|O14773-2|TPP1;ENSG00000166340|ENST00000299427|TPP1 nc|ENSG00000166340|O14773-2|TPP1 nc|ENSG00000166340|O14773-2|TPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.522705078125 3 351.522303 1051.54508 0.2297 8.0744E-05 0.69345 0.00024376 0.92314 0.00032451 351.5224749077648 31.297 0.2506 31.194 31.034 31.284 -0.10269 21 9 3 0 0 0 0.18465 1 16230 16230 17.113 5.6182 1 4309000 34976 7472 23337 23777 41093 41093 0.021368761630810695 LPHVHTVSY 9 Unmodified _LPHVHTVSY_ 0 0 0 nc|ENSG00000166340|O14773-2|TPP1;ENSG00000166340|ENST00000299427|TPP1 nc|ENSG00000166340|O14773-2|TPP1 nc|ENSG00000166340|O14773-2|TPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5227966308594 3 351.522303 1051.54508 1.4077 0.00049483 0.38068 0.00013382 1.7884 0.00062865 351.5224559430156 35.508 0.4446 31.316 31.111 31.555 -4.1928 66 27 4 0 0 0 0.10925 2 20690 20558;20690 22.736 10.496 1 30582000 34977 7472 23337 23777 41094;41095 41095 0.021368761630810695 LPHVHTVSY 9 Unmodified _LPHVHTVSY_ 0 0 0 nc|ENSG00000166340|O14773-2|TPP1;ENSG00000166340|ENST00000299427|TPP1 nc|ENSG00000166340|O14773-2|TPP1 nc|ENSG00000166340|O14773-2|TPP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 351.522303 1051.54508 0.12026 4.2273E-05 0.17216 6.0519E-05 0.29242 0.00010279 351.52233470250974 31.315 0.28588 31.315 31.132 31.418 0 0.040038 -0.00031534 NaN 22.736 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1157100 34978 7472 23337 23777 0.021368761630810695 LPHVILRY 8 Unmodified _LPHVILRY_ 0 0 0 REV__ENSG00000180929|ENST00000322241|GPR62 REV__ENSG00000180929|ENST00000322241|GPR62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.8092651367188 2 505.810919 1009.60729 -0.60232 -0.00030466 -2.6798 -0.0013555 -3.2821 -0.0016601 505.8097457410097 37.274 0.28981 37.003 36.846 37.136 -0.27133 13 11 2 0 0 0 0.77907 1 19608 19608 10.183 4.423 1 1389700 + 34979 23177 23338 23778 41096 41096 0.10286647302098118 LPHVILRY 8 Unmodified _LPHVILRY_ 0 0 0 REV__ENSG00000180929|ENST00000322241|GPR62 REV__ENSG00000180929|ENST00000322241|GPR62 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.810919 1009.60729 -0.1164 -5.8876E-05 -3.1174 -0.0015768 -3.2338 -0.0016357 505.8095324095117 36.885 0.2351 36.906 36.791 37.026 0.021545 -0.04828 -0.000284 NaN 10.183 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 746910 + 34980 23177 23338 23778 0.10286647302098118 LPHVRAFSY 9 Unmodified _LPHVRAFSY_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX nc|ENSG00000008441|Q14938-2|NFIX nc|ENSG00000008441|Q14938-2|NFIX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8664245605469 3 363.866181 1088.57671 0.49278 0.0001793 0.24596 8.9496E-05 0.73873 0.0002688 363.8663193450362 42.749 0.40298 42.74 42.516 42.919 -0.0088196 32 18 3 0 0 0 0.28023 1 22910 22910 28.495 17.695 1 9369300 34981 392 23339 23779 41097 41097 0.03596868917043139 LPHVRAIAY 9 Unmodified _LPHVRAIAY_ 0 0 0 ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-4|NFIB ENSG00000147862|ENST00000380953|NFIB ENSG00000147862|ENST00000380953|NFIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3060302734375 2 520.306001 1038.59745 0.15623 8.1286E-05 -1.3861 -0.00072121 -1.2299 -0.00063993 520.305913645918 38.827 0.4234 38.838 38.578 39.001 0.011452 45 20 3 0 0 0 0.012148 1 20675 20675 74.423 32.328 1 4463500 34982 5886 23340 23780 41098 41098 0.07969459296691639 LPHVRAIAY 9 Unmodified _LPHVRAIAY_ 0 0 0 ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-4|NFIB ENSG00000147862|ENST00000380953|NFIB ENSG00000147862|ENST00000380953|NFIB MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.306640625 2 520.306001 1038.59745 0.66187 0.00034437 1.1629 0.00060504 1.8247 0.00094941 520.3064463227793 43.998 0.41608 39.233 38.935 39.351 -4.7648 54 26 3 0 0 0 0.031062 1 26828 26828 54.774 31.625 1 20736000 34983 5886 23340 23780 41099 41099 0.07969459296691639 LPHVVPTL 8 Unmodified _LPHVVPTL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2713012695312 2 438.271096 874.527639 0.23476 0.00010289 0.30986 0.0001358 0.54462 0.00023869 438.2709277211184 58.518 0.37505 58.028 57.778 58.153 -0.49079 35 17 3 0 0 0 0.24182 1 31775 31775 63.394 17.644 1 3119100 34984 7248 23341 23781 41100 41100 0.08535580628108619 LPHYLFPF 8 Unmodified _LPHYLFPF_ 0 0 0 REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3 REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.276611328125 2 517.278921 1032.54329 0.20846 0.00010783 -4.3626 -0.0022567 -4.1541 -0.0021488 517.2767310258091 55.276 0.24131 55.208 55.057 55.298 -0.068737 16 11 2 0 0 0 0.70131 1 30052 30052 17.087 1.2394 1 1383700 + 34985 30048 23342 23782 41101 41101 0.028318671451415867 LPIAAAMY 8 Oxidation (M) _LPIAAAM(Oxidation (M))Y_ LPIAAAM(1)Y LPIAAAM(42)Y 0 0 1 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2286376953125 2 433.228039 864.441526 1.5251 0.00066071 -1.9408 -0.00084079 -0.41568 -0.00018009 433.2268128635154 58.553 0.36361 52.478 52.319 52.683 -6.0745 27 20 2 0 0 0 0.42709 1 37535 37535 41.817 19.365 1 8799600 34986 6750 23343 23783 41102 41102 1172 0.00388252731056582 LPIAPDLEHF 10 Unmodified _LPIAPDLEHF_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3076171875 2 576.308406 1150.60226 0.64037 0.00036905 -0.12985 -7.4835E-05 0.51051 0.00029421 576.3080144049003 71.665 0.28976 71.189 71.073 71.363 -0.47609 25 11 3 0 0 0 0.0093317 1 39232 39232 88.904 32.727 1 2606000 34987 9484 23344 23784 41103 41103 0.03298298648792297 LPIASISDY 9 Unmodified _LPIASISDY_ 0 0 0 ENST00000512558.5_1_5:79729945-79747536:+|nuORF;ENSG00000039319|ENST00000505560|ZFYVE16 ENST00000512558.5_1_5:79729945-79747536:+|nuORF ENST00000512558.5_1_5:79729945-79747536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.5139770507812 1 978.514239 977.506963 0.06818 6.6715E-05 -0.13049 -0.00012769 -0.06231 -6.0971E-05 978.5139314949679 64.425 0.26398 64.425 64.255 64.519 0 15 11 2 0 0 0 0.12841 1 35925 35925 30.225 14.457 1 403450 34988 642 23345 23785 41104 41104 0.017309454577457473 LPIATKEQL 9 Unmodified _LPIATKEQL_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3076477050781 2 506.8055 1011.59645 0.60562 0.00030693 -0.092753 -4.7008E-05 0.51287 0.00025992 506.8053081906298 42.274 0.18338 42.274 42.199 42.382 0 17 8 3 0 0 0 0.032796 1 22883 22883 53.833 8.1332 1 3503000 34989 5731 23346 23786 41105 41105 0.0911120013714708 LPIATKEQL 9 Unmodified _LPIATKEQL_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8065795898438 2 506.8055 1011.59645 0.55164 0.00027957 -0.25949 -0.00013151 0.29215 0.00014807 506.805580836968 48.039 0.31509 42.805 42.657 42.973 -5.2339 26 18 2 0 0 0 0.014417 1 29875 29875 69.105 9.031 1 11485000 34990 5731 23346 23786 41106 41106 0.0911120013714708 LPIATVEEL 9 Unmodified _LPIATVEEL_ 0 0 0 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2;ENSG00000130775|ENST00000373921|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 984.5625610351562 1 984.561189 983.553913 0.14132 0.00013914 0.33595 0.00033076 0.47727 0.0004699 984.5617321209593 72.545 0.19859 72.545 72.387 72.585 0 13 7 2 0 0 0 0.03327 1 40355 40355 53.576 17.531 1 749890 34991 4259 23347 23787 41107 41107 0.06147805008902196 LPIAYVLPF 9 Unmodified _LPIAYVLPF_ 0 0 0 REV__ENSG00000120942|ENST00000376810|UBIAD1 REV__ENSG00000120942|ENST00000376810|UBIAD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2862548828125 2 516.810054 1031.60555 0.77316 0.00039958 -3.7809 -0.001954 -3.0078 -0.0015545 516.8087668554431 50.278 0.15919 49.886 49.772 49.931 -0.3923 18 7 3 0 0 0 0.17158 1 27082 27082 14.582 0 1 2351200 + 34992 19271 23348 23788 41108 41108 0.09101593493437576 LPICSSLSF 9 Carbamidomethyl (C) _LPIC(Carbamidomethyl (C))SSLSF_ LPIC(1)SSLSF LPIC(51)SSLSF 0 1 0 REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2634887695312 2 512.26261 1022.51067 0.38483 0.00019714 0.19312 9.8928E-05 0.57795 0.00029606 512.262924186497 59.238 0.41658 59.238 58.984 59.4 0 30 17 2 0 0 0 0.038285 1 32971 32971 50.855 6.448 1 4617800 + 34993 27727 23349 23789 41109 41109 1059 0.0003129195997644274 LPIDCSPAL 9 Carbamidomethyl (C) _LPIDC(Carbamidomethyl (C))SPAL_ LPIDC(1)SPAL LPIDC(44)SPAL 0 1 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2569885253906 2 493.254785 984.495018 0.8013 0.00039525 0.73355 0.00036183 1.5348 0.00075707 493.25557626698765 67.202 0.37869 61.026 60.857 61.236 -6.1757 32 20 2 0 0 0 0.052168 1 43725 43725 44.407 19.733 1 24229000 34994 2105 23350 23790 41110 41110 209 0.002150054429193915 LPIDGANDLF 10 Unmodified _LPIDGANDLF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7774658203125 2 537.776939 1073.53933 0.25755 0.00013851 0.81735 0.00043955 1.0749 0.00057806 537.7773551279411 78.459 0.54005 78.459 78.222 78.762 0 82 25 5 0 0 0 0.04925 3 43613 43520;43613;43706 58.679 27.934 1 11555000 34995 10088 23351 23791 41111;41112;41113 41112 0.005497328607361851 LPIDGANDLF 10 Unmodified _LPIDGANDLF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7770385742188 2 537.776939 1073.53933 0.22729 0.00012223 -0.24255 -0.00013044 -0.01526 -8.2067E-06 537.77681369188 79.001 0.62743 78.515 78.265 78.893 -0.48595 66 26 4 0 0 0 0.085354 1 43288 43288 49.933 2.1843 1 11100000 34996 10088 23351 23791 41114 41114 0.005497328607361851 LPIDGANDLF 10 Unmodified _LPIDGANDLF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 1075.58935546875 1 1074.5466 1073.53933 0.91379 0.00098191 -2.1522 -0.0023126 -1.2384 -0.0013307 1074.546443488668 87.074 0.43137 80.898 80.681 81.112 -6.1757 35 23 2 0 0 0 0.033218 1 57350 57350 66.457 8.7347 1 15385000 34997 10088 23351 23791 41115 41115 0.005497328607361851 LPIDGANDLF 10 Unmodified _LPIDGANDLF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;ENST00000492204.1_1_10:103552448-103553834:-|nuORF nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2879028320312 2 537.776939 1073.53933 0.97017 0.00052174 -0.26629 -0.00014321 0.70388 0.00037853 537.7787840913683 87.089 0.44669 80.914 80.699 81.146 -6.1757 62 24 4 0 0 0 0.21193 1 57372 57372 27.629 15.097 1 91031000 34998 10088 23351 23791 41116 41116 0.005497328607361851 LPIDKRQLY 9 Unmodified _LPIDKRQLY_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5603942871094 3 382.560758 1144.66044 NaN NaN NaN NaN NaN NaN NaN 36.537 1 36.287 35.787 36.787 -0.2497 0 0 0 0.348 1 19174 19174 22.658 7.4096 1 34999 4730 23352 23792 41117 41117 0.09389980294099587 LPIDKRQLY 9 Unmodified _LPIDKRQLY_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5610046386719 3 382.560758 1144.66044 1.2215 0.00046729 0.52709 0.00020164 1.7486 0.00066893 382.56081471624293 41.115 0.31567 36.507 36.371 36.686 -4.6079 40 19 3 0 0 0 0.037253 1 24647 24647 51.415 20.712 1 16727000 35000 4730 23352 23792 41118 41118 0.09389980294099587 LPIDKRQLY 9 Unmodified _LPIDKRQLY_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MSMS AL20221201_MKP_PDAC_01 4 573.337646484375 2 573.337498 1144.66044 NaN NaN NaN NaN NaN NaN NaN 41.18 1 36.573 36.073 37.073 -4.6079 0 0 0 0.076188 1 24689 24689 45.7 11.298 1 35001 4730 23352 23792 41119 41119 0.09389980294099587 LPIDKRQLY 9 Unmodified _LPIDKRQLY_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.560758 1144.66044 -0.21063 -8.0579E-05 -0.78579 -0.00030061 -0.99642 -0.00038119 382.5603820448184 36.141 0.17561 36.166 36.096 36.272 0.024967 -0.17068 -0.0013301 NaN 51.415 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 963790 35002 4730 23352 23792 0.09389980294099587 LPIDPNEPTY 10 Unmodified _LPIDPNEPTY_ 0 0 0 nc|ENSG00000153487|Q9UK53-3|ING1;nc|ENSG00000153487|Q9UK53-4|ING1;nc|ENSG00000153487|Q9UK53-5|ING1;ENSG00000153487|ENST00000333219|ING1;nc|ENSG00000153487|Q9UK53|ING1 nc|ENSG00000153487|Q9UK53-3|ING1 nc|ENSG00000153487|Q9UK53-3|ING1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7882690429688 2 579.787504 1157.56045 0.20385 0.00011819 -0.44844 -0.00026 -0.24459 -0.00014181 579.7870799314597 52.558 0.36957 52.558 52.332 52.702 0 54 16 4 0 0 0 0.046375 1 29045 29045 60.074 38.537 1 49422000 35003 6265 23353 23793 41120 41120 -0.012023018303807476 LPIDVTEGEVI 11 Unmodified _LPIDVTEGEVI_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8237915039062 2 592.824086 1183.63362 0.19494 0.00011556 -0.35528 -0.00021062 -0.16034 -9.5055E-05 592.8237060335824 75.086 0.32678 75.086 74.948 75.275 0 53 20 3 0 0 0 0.58219 1 41847 41847 12.241 3.4953 1 2152400 35004 443;15691 23354 23794 41121 41121 0.04914826892263591 LPIDVTEGEVI 11 Unmodified _LPIDVTEGEVI_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8250122070312 2 592.824086 1183.63362 0.72529 0.00042997 1.2138 0.0007196 1.9391 0.0011496 592.8241546371911 83.867 0.32724 77.691 77.528 77.856 -6.1757 28 16 2 0 0 0 0.014934 1 55174 55174 62.573 24.397 1 8623600 35005 443;15691 23354 23794 41122 41122 0.04914826892263591 LPIEAPIRM 9 Oxidation (M) _LPIEAPIRM(Oxidation (M))_ LPIEAPIRM(1) LPIEAPIRM(65) 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2998046875 2 528.299527 1054.5845 0.56665 0.00029936 -0.26252 -0.00013869 0.30413 0.00016067 528.2994938916407 47.468 0.4288 47.115 46.899 47.328 -0.3526 68 20 5 0 0 0 0.018301 2 25481 25385;25481 65.235 29.108 1 140110000 35006 10128 23355 23795 41123;41124 41124 1645 0.05939260122295309 LPIEAPIRM 9 Oxidation (M) _LPIEAPIRM(Oxidation (M))_ LPIEAPIRM(1) LPIEAPIRM(79) 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2989501953125 2 528.299527 1054.5845 0.9373 0.00049517 -1.3432 -0.0007096 -0.40588 -0.00021442 528.2988805316801 47.171 0.32843 47.137 46.976 47.305 -0.033417 45 16 4 0 0 0 0.010611 1 25377 25377 78.728 49.646 1 21164000 35007 10128 23355 23795 41125 41125 1645 0.05939260122295309 LPIEAPIRM 9 Unmodified _LPIEAPIRM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3024291992188 2 520.30207 1038.58959 0.31535 0.00016408 -1.193 -0.00062074 -0.87769 -0.00045667 520.3018240763384 63.724 0.31966 63.238 63.04 63.359 -0.48617 43 14 4 0 0 0 0.06294 1 34716 34716 41.84 5.7126 1 11504000 35008 10128 23355 23796 41126 41126 0.07183563984926877 LPIEAPIRM 9 Unmodified _LPIEAPIRM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3017578125 2 520.30207 1038.58959 0.39369 0.00020484 -0.54489 -0.00028351 -0.1512 -7.8669E-05 520.3019863249186 63.281 0.27038 63.259 63.089 63.359 -0.021614 31 13 3 0 0 0 0.013041 1 34595 34595 71.922 28.064 1 9029900 35009 10128 23355 23796 41127 41127 0.07183563984926877 LPIEAPIRM 9 Unmodified _LPIEAPIRM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.302490234375 2 520.30207 1038.58959 0.87671 0.00045615 -0.43411 -0.00022587 0.44259 0.00023028 520.3020829810832 69.487 0.8022 63.311 62.883 63.685 -6.1757 101 43 3 0 0 0 0.018301 3 45511 45274;45390;45511 65.235 6.0747 1 66050000 35010 10128 23355 23796 41128;41129;41130 41130 0.07183563984926877 LPIEAPIRM 9 Unmodified _LPIEAPIRM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MSMS AL20221201_MKP_PDAC_01 4 520.3031616210938 2 520.30207 1038.58959 NaN NaN NaN NaN NaN NaN NaN 69.131 1 62.955 62.455 63.455 -6.1757 0 0 0 0.16996 1 45140 45140 34.402 0 1 35011 10128 23355 23796 41131 41131 0.07183563984926877 LPIEAPIRMM 10 2 Oxidation (M) _LPIEAPIRM(Oxidation (M))M(Oxidation (M))_ LPIEAPIRM(1)M(1) LPIEAPIRM(56)M(56) 0 0 2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3185424804688 2 601.817227 1201.6199 0.68829 0.00041423 -0.0025634 -1.5427E-06 0.68573 0.00041268 601.8174569191672 47.273 0.33513 46.92 46.685 47.02 -0.3526 26 16 2 0 0 0 0.060508 1 25339 25339 55.503 33.756 1 4754900 35012 10128 23356 23797 41132 41132 1645;1646 0.027155545878031262 LPIEAVYHRY 10 Unmodified _LPIEAVYHRY_ 0 0 0 nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2317504882812 3 420.896029 1259.66626 1.4169 0.00059636 0.12993 5.4686E-05 1.5468 0.00065105 420.8959266126343 47.851 0.3989 42.617 42.435 42.834 -5.2339 35 24 2 0 0 0 0.5802 1 29728 29728 12.175 2.931 1 10797000 35013 4972 23357 23798 41133 41133 0.046810788057428 LPIEDQISL 9 Unmodified _LPIEDQISL_ 0 0 0 nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3;nc|ENSG00000143257|Q14994-16|NR1I3;nc|ENSG00000143257|Q14994-4|NR1I3;nc|ENSG00000143257|Q14994-9|NR1I3;nc|ENSG00000143257|Q14994-10|NR1I3;nc|ENSG00000143257|Q14994-11|NR1I3;nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3;nc|ENSG00000144852|O75469-5|NR1I2;nc|ENSG00000144852|O75469-2|NR1I2;nc|ENSG00000144852|O75469-4|NR1I2;nc|ENSG00000144852|O75469-6|NR1I2;ENSG00000144852|ENST00000393716|NR1I2;nc|ENSG00000144852|O75469-3|NR1I2;nc|ENSG00000144852|O75469-7|NR1I2 nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000144852|O75469-5|NR1I2 nc|ENSG00000143257|Q14994-15|NR1I3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2869262695312 2 514.28714 1026.55973 0.36321 0.00018679 2.793 0.0014364 3.1562 0.0016232 514.2866780567236 72.623 0.43293 72.623 72.387 72.819 0 42 19 4 0 0 0 0.095405 1 40477 40477 34.102 13.649 1 2442000 35014 5484;5653 23358 23799 41134 41134 0.04750903520562133 LPIEGPPSF 9 Unmodified _LPIEGPPSF_ 0 0 0 ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1 ENST00000496906.1_1_9:35750742-35753913:+|nuORF ENST00000496906.1_1_9:35750742-35753913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7588806152344 2 478.758018 955.501483 0.075559 3.6174E-05 0.63869 0.00030578 0.71425 0.00034195 478.75836279109456 69.487 0.48167 69.008 68.721 69.203 -0.47903 47 20 3 0 0 0 0.016184 1 37930 37930 67.344 27.387 1 3048200 35015 2480 23359 23800 41135 41135 0.021952666659558417 LPIEGPPSF 9 Unmodified _LPIEGPPSF_ 0 0 0 ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1 ENST00000496906.1_1_9:35750742-35753913:+|nuORF ENST00000496906.1_1_9:35750742-35753913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5081176757812 1 956.50876 955.501483 -0.12049 -0.00011525 -2.3796 -0.0022761 -2.5001 -0.0023914 956.5051761674214 69.441 0.2355 68.962 68.851 69.086 -0.47903 15 9 2 0 0 0 0.047196 1 37951 37951 46.021 15.796 1 1108000 35016 2480 23359 23800 41136 41136 0.021952666659558417 LPIEGPPSF 9 Unmodified _LPIEGPPSF_ 0 0 0 ENST00000496906.1_1_9:35750742-35753913:+|nuORF;ENSG00000107185|ENST00000378078|RGP1 ENST00000496906.1_1_9:35750742-35753913:+|nuORF ENST00000496906.1_1_9:35750742-35753913:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7596435546875 2 478.758018 955.501483 0.44685 0.00021393 1.0425 0.0004991 1.4893 0.00071304 478.7584090172481 76.687 0.40031 70.512 70.299 70.7 -6.1757 37 20 2 0 0 0 0.012148 3 50086 50086;50121;50248 74.423 40.32 1 19197000 35017 2480 23359 23800 41137;41138;41139 41137 0.021952666659558417 LPIENDTYKY 10 Unmodified _LPIENDTYKY_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.3138427734375 2 628.313886 1254.61322 0.77313 0.00048577 1.5316 0.00096229 2.3047 0.0014481 628.3153689084457 42.54 0.22338 42.54 42.42 42.644 0 26 10 3 0 0 0 0.0081376 1 23028 23028 91.085 59.047 1 7637500 35018 3211 23360 23801 41140 41140 -0.003903437675717214 LPIENDTYKY 10 Unmodified _LPIENDTYKY_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8154296875 2 628.313886 1254.61322 0.74055 0.0004653 1.034 0.00064967 1.7745 0.001115 628.3147170529456 48.619 0.28479 43.223 43.069 43.354 -5.3961 26 16 2 0 0 0 0.0042881 1 30325 30325 100.71 64.202 1 24424000 35019 3211 23360 23801 41141 41141 -0.003903437675717214 LPIENDVY 8 Unmodified _LPIENDVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7454528808594 2 481.745108 961.475663 0.31812 0.00015325 0.57339 0.00027623 0.89151 0.00042948 481.7454409143418 51.661 0.21925 51.661 51.583 51.802 0 15 9 2 0 0 0 0.55032 1 28568 28568 30.225 13.283 1 1442100 35020 4868 23361 23802 41142 41142 -0.006616275763349222 LPIENDVY 8 Unmodified _LPIENDVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.4869384765625 1 962.482939 961.475663 0.1081 0.00010404 1.6268 0.0015657 1.7349 0.0016698 962.4854674534245 51.69 0.13493 51.69 51.642 51.777 0 8 5 2 0 0 0 0.58902 1 28586 28586 26.884 11.036 1 599040 35021 4868 23361 23802 41143 41143 -0.006616275763349222 LPIENDVYKY 10 Unmodified _LPIENDVYKY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.3233642578125 2 627.324254 1252.63395 0.52656 0.00033033 -0.22338 -0.00014013 0.30319 0.0001902 627.3241013409296 49.862 0.37989 49.862 49.695 50.075 0 53 17 5 0 0 0 0.0096273 1 27437 27437 88.364 62.343 1 9928200 35022 4868 23362 23803 41144 41144 0.017742466120807876 LPIENDVYKY 10 Unmodified _LPIENDVYKY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3248291015625 2 627.324254 1252.63395 0.68859 0.00043197 -1.6265 -0.0010203 -0.93791 -0.00058837 627.3233389121913 50.388 0.30306 49.995 49.83 50.133 -0.3923 29 14 3 0 0 0 0.07026 1 27102 27102 53.317 32.736 1 9200700 35023 4868 23362 23803 41145 41145 0.017742466120807876 LPIENDVYKY 10 Unmodified _LPIENDVYKY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3246459960938 2 627.324254 1252.63395 0.56583 0.00035496 0.10406 6.5277E-05 0.66989 0.00042024 627.3244119236663 56.515 0.34578 50.538 50.357 50.703 -5.9769 49 19 3 0 0 0 9.8271E-06 2 35986 35986;36121 128.57 82.833 1 57126000 35024 4868 23362 23803 41146;41147 41146 0.017742466120807876 LPIERRKPRRK 11 Unmodified _LPIERRKPRRK_ 0 0 0 REV__nc|ENSG00000007171|P35228-2|NOS2 REV__nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.4898986816406 4 362.987572 1447.92118 0.69143 0.00025098 -0.71648 -0.00026007 -0.025041 -9.0897E-06 363.4891827395231 42.823 0.8625 42.823 42.143 43.006 0 72 43 4 0 0 0 0.73992 1 23179 23179 0.50596 0.41111 1 34869000 + 35025 17003 23363 23804 41148 41148 0.21513985064598273 LPIERRKPRRK 11 Unmodified _LPIERRKPRRK_ 0 0 0 REV__nc|ENSG00000007171|P35228-2|NOS2 REV__nc|ENSG00000007171|P35228-2|NOS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.4898986816406 4 362.987572 1447.92118 0.69143 0.00025098 -0.71648 -0.00026007 -0.025041 -9.0897E-06 363.4891827395231 42.823 0.8625 42.823 42.143 43.006 0 72 43 4 0 0 0 0.30599 1 23179 23179 0.50596 0.41111 1 34869000 + 35026 17003 23363 23804 41149 41149 0.21513985064598273 LPIESNPHSF 10 Unmodified _LPIESNPHSF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7896118164062 2 570.787838 1139.56112 0.49443 0.00028221 0.86561 0.00049408 1.36 0.00077629 570.787952007343 43.196 0.21652 43.196 43.084 43.3 0 23 10 3 0 0 0 0.01074 1 23423 23423 86.332 44.492 1 11753000 35027 2874 23364 23805 41150 41150 -0.0030746239067411807 LPIESNPHSF 10 Unmodified _LPIESNPHSF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7879638671875 2 570.787838 1139.56112 0.34541 0.00019716 0.16514 9.4261E-05 0.51055 0.00029142 570.7878660027309 43.448 0.18658 43.138 43.045 43.231 -0.31039 13 8 2 0 0 0 0.010233 1 23142 23142 87.258 49.107 1 7735300 35028 2874 23364 23805 41151 41151 -0.0030746239067411807 LPIESNPHSF 10 Unmodified _LPIESNPHSF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20221201_MKP_PDAC_01 4 570.7904663085938 2 570.787838 1139.56112 NaN NaN NaN NaN NaN NaN NaN 48.947 1 43.551 43.051 44.051 -5.3961 0 0 0 0.025913 1 30529 30529 86.332 46.382 1 35029 2874 23364 23805 41152 41152 -0.0030746239067411807 LPIGATVNM 9 Oxidation (M) _LPIGATVNM(Oxidation (M))_ LPIGATVNM(1) LPIGATVNM(94) 0 0 1 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2492065429688 2 466.249503 930.484453 -0.1763 -8.2201E-05 -0.37715 -0.00017585 -0.55345 -0.00025805 466.2493293095042 42.178 0.34123 41.871 41.682 42.023 -0.30682 28 16 2 0 0 0 0.0081063 2 22455 22341;22455 93.883 12.27 1 25248000 35030 2298 23365 23806 41153;41154 41154 392 0.016430227884939086 LPIGATVNM 9 Oxidation (M) _LPIGATVNM(Oxidation (M))_ LPIGATVNM(1) LPIGATVNM(94) 0 0 1 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2486877441406 2 466.249503 930.484453 0.83204 0.00038794 -0.63331 -0.00029528 0.19873 9.2656E-05 466.249161278645 49.372 0.37935 43.976 43.704 44.083 -5.3961 44 24 2 0 0 0 0.0081063 2 30702 30702;30826 93.883 12.27 1 52353000 35031 2298 23365 23806 41155;41156 41155 392 0.016430227884939086 LPIGATVNM 9 Unmodified _LPIGATVNM_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.252197265625 2 458.252046 914.489538 0.17563 8.0482E-05 0.78442 0.00035946 0.96005 0.00043995 458.25244568425506 59.039 0.3385 58.548 58.412 58.75 -0.49079 32 15 3 0 0 0 0.016494 1 32094 32094 67.035 9.564 1 3239300 35032 2298 23365 23807 41157 41157 0.028873266511027396 LPIGATVNM 9 Unmodified _LPIGATVNM_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2524108886719 2 458.252046 914.489538 0.53074 0.00024321 0.054217 2.4845E-05 0.58496 0.00026806 458.2521351503433 66.666 0.66028 60.49 60.197 60.857 -6.1757 91 37 3 0 0 0 0.0094915 3 43240 43240;43367;43497 81.864 9.3581 1 105940000 35033 2298 23365 23807 41158;41159;41160 41158 0.028873266511027396 LPIGATVNM 9 Unmodified _LPIGATVNM_ 0 0 0 ENSG00000105281|ENST00000542575|SLC1A5;nc|ENSG00000105281|Q15758-3|SLC1A5;nc|ENSG00000105281|Q15758-2|SLC1A5;nc|ENSG00000115902|P43007-2|SLC1A4;ENSG00000115902|ENST00000234256|SLC1A4 ENSG00000105281|ENST00000542575|SLC1A5 ENSG00000105281|ENST00000542575|SLC1A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 915.4986572265625 1 915.496815 914.489538 0.10269 9.4015E-05 0.32635 0.00029877 0.42904 0.00039279 915.4969425805717 66.663 0.40147 60.487 60.28 60.681 -6.1757 33 22 2 0 0 0 0.0014543 2 43293 43293;43428 136.33 43.842 1 14674000 35034 2298 23365 23807 41161;41162 41161 0.028873266511027396 LPIGDVATQY 10 Unmodified _LPIGDVATQY_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.784423828125 2 538.784764 1075.55498 0.61465 0.00033116 -1.0907 -0.00058763 -0.47601 -0.00025647 538.7840562150762 57.229 0.56792 57.229 56.922 57.49 0 100 24 6 0 0 0 0.063761 3 31837 31735;31837;31949 54.774 27.89 1 523870000 35035 4726 23366 23808 41163;41164;41165 41164 0.020220193778186513 LPIGDVATQY 10 Unmodified _LPIGDVATQY_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.78515625 2 538.784764 1075.55498 0.24016 0.00012939 -0.63602 -0.00034268 -0.39586 -0.00021329 538.7843598959058 57.831 0.49249 57.341 57.126 57.619 -0.48974 99 23 6 0 0 0 0.092434 2 31354 31354;31456 48.346 26.599 1 369990000 35036 4726 23366 23808 41166;41167 41166 0.020220193778186513 LPIGDVATQY 10 Unmodified _LPIGDVATQY_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7857666015625 2 538.784764 1075.55498 0.76898 0.00041431 0.041726 2.2481E-05 0.81071 0.0004368 538.7848053745943 57.471 0.31358 57.405 57.22 57.533 -0.066036 52 15 4 0 0 0 0.017277 2 31224 31224;31319 78.149 24.317 1 30887000 35037 4726 23366 23808 41168;41169 41168 0.020220193778186513 LPIGDVATQY 10 Unmodified _LPIGDVATQY_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7850341796875 2 538.784764 1075.55498 0.13005 7.0067E-05 -0.13045 -7.0287E-05 -0.00040881 -2.2026E-07 538.7846879254188 65.48 0.85544 59.304 58.917 59.773 -6.1757 154 49 4 0 0 0 0.04925 4 42703 42317;42441;42565;42703 58.679 28.042 1 1711399999.9999998 35038 4726 23366 23808 41170;41171;41172;41173 41173 0.020220193778186513 LPIGDVATQYF 11 Unmodified _LPIGDVATQYF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3189697265625 2 612.318971 1222.62339 0.2309 0.00014138 -0.18084 -0.00011073 0.050055 3.065E-05 612.3187318427309 81.801 0.28166 81.801 81.613 81.895 0 29 16 3 0 0 0 0.54936 1 45347 45347 13.906 7.1829 1 1143200 35039 4726 23367 23809 41174 41174 0.02098263957668678 LPIGDVATQYF 11 Unmodified _LPIGDVATQYF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.3197021484375 2 612.318971 1222.62339 0.71256 0.00043631 0.24937 0.00015269 0.96193 0.00058901 612.3190783511786 82.321 0.42609 81.825 81.629 82.055 -0.4952 66 17 5 0 0 0 0.0052184 2 45114 45008;45114 74.929 53.182 1 31159000 35040 4726 23367 23809 41175;41176 41176 0.02098263957668678 LPIGDVATQYF 11 Unmodified _LPIGDVATQYF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3203125 2 612.318971 1222.62339 2.0969 0.001284 -0.24743 -0.00015151 1.8495 0.0011325 612.318769642494 81.772 0.34318 81.832 81.636 81.979 0.059929 44 13 4 0 0 0 0.0052184 2 45174 45174;45272 74.929 52.193 1 23656000 35041 4726 23367 23809 41177;41178 41177 0.02098263957668678 LPIGDVATQYF 11 Unmodified _LPIGDVATQYF_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3206787109375 2 612.318971 1222.62339 0.90009 0.00055114 0.41972 0.000257 1.3198 0.00080815 612.3191849333982 91.046 0.8073 84.87 84.444 85.252 -6.1757 165 47 5 0 0 0 0.012451 5 59916 59916;60044;60172;60302;60427 65.235 40.028 1 242350000 35042 4726 23367 23809 41179;41180;41181;41182;41183 41179 0.02098263957668678 LPIGFLAYLMC 11 Unmodified _LPIGFLAYLMC_ 0 0 0 REV__ENSG00000186795|ENST00000334549|KCNK18 REV__ENSG00000186795|ENST00000334549|KCNK18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8268432617188 2 620.827063 1239.63957 -0.42359 -0.00026298 0.16094 9.9915E-05 -0.26265 -0.00016306 620.8270111049818 78.349 0.28548 77.863 77.657 77.942 -0.48596 24 12 3 0 0 0 0.61011 1 42865 42865 10.824 2.9138 1 1509600 + 35043 23596 23368 23810 41184 41184 0.02933930598533152 LPIGFLAYLMC 11 Unmodified _LPIGFLAYLMC_ 0 0 0 REV__ENSG00000186795|ENST00000334549|KCNK18 REV__ENSG00000186795|ENST00000334549|KCNK18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 620.827063 1239.63957 -0.42359 -0.00026298 0.16094 9.9915E-05 -0.26265 -0.00016306 620.8270111049818 78.349 0.28548 77.863 77.657 77.942 -0.48596 0 0 NaN 10.824 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1509600 + 35044 23596 23368 23810 0.02933930598533152 LPIGGLAEF 9 Unmodified _LPIGGLAEF_ 0 0 0 ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENSG00000125166|ENST00000245206|GOT2 ENST00000568368.1_1_16:58756047-58768190:-|nuORF ENST00000568368.1_1_16:58756047-58768190:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 916.5178833007812 1 916.513845 915.506569 0.22744 0.00020845 1.1309 0.0010365 1.3583 0.0012449 916.5142764984113 83.342 0.31084 82.844 82.741 83.052 -0.49751 17 12 2 0 0 0 0.068777 1 45626 45626 40.449 11.962 1 283810 35045 3832 23369 23811 41185 41185 0.045435705285512995 LPIHLSKYI 9 Unmodified _LPIHLSKYI_ 0 0 0 ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10;ENST00000574478.1_1_17:18651366-18682393:+|nuORF ENSG00000241322|ENST00000395906|FBXW10B ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8903503417969 3 361.890215 1082.64882 0.47617 0.00017232 0.96428 0.00034896 1.4404 0.00052128 361.8904787844596 58.669 0.29644 58.608 58.505 58.801 -0.060719 21 14 2 0 0 0 0.2289 1 31979 31979 20.581 4.0151 1 2450900 35046 8160 23370 23812 41186 41186 0.11079783270747612 LPIHNQDAF 9 Unmodified _LPIHNQDAF_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7697143554688 2 527.769448 1053.52434 -0.11804 -6.23E-05 0.048084 2.5377E-05 -0.06996 -3.6922E-05 527.7694621930709 39.449 0.23539 39.152 39.029 39.264 -0.29716 24 10 3 0 0 0 0.15471 1 20831 20831 27.629 8.3718 1 4441700 35047 778 23371 23813 41187 41187 -0.0002771421659417683 LPIHPGWPAF 10 Unmodified _LPIHPGWPAF_ 0 0 0 ENST00000444814.2_1_12:6495191-6495660:+|nuORF ENST00000444814.2_1_12:6495191-6495660:+|nuORF ENST00000444814.2_1_12:6495191-6495660:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8110961914062 2 567.808377 1133.6022 0.41868 0.00023773 -3.3552 -0.0019051 -2.9365 -0.0016674 567.8065238486131 47.236 0.40424 47.236 46.98 47.384 0 51 18 4 0 0 0 0.22102 1 25782 25782 32.117 3.9437 1 6596700 35048 13442 23372 23814 41188 41188 0.04074343439447148 LPIIFEDRY 9 Unmodified _LPIIFEDRY_ 0 0 0 nc|ENSG00000082269|Q9P2D6-2|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENST00000393299.6_1_6:71138108-71233862:+|nuORF nc|ENSG00000082269|Q9P2D6-2|FAM135A nc|ENSG00000082269|Q9P2D6-2|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3163452148438 2 583.316232 1164.61791 -0.16469 -9.6064E-05 0.55714 0.00032499 0.39246 0.00022893 583.3165089585905 69.795 0.40807 69.316 69.086 69.494 -0.47903 31 17 2 0 0 0 0.16019 2 38115 38115;38217 34.932 9.2375 1 6413700 35049 1343 23373 23815 41189;41190 41189 0.042185851658587126 LPIISKKE 8 Unmodified _LPIISKKE_ 0 0 0 REV__ENSG00000173418|ENST00000334982|NAA20 REV__ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2991638183594 2 464.29731 926.580068 0.8208 0.0003811 0.47515 0.00022061 1.2959 0.00060171 464.29752885361273 57.46 0.31437 57.394 57.259 57.573 -0.066036 39 15 3 0 0 0 0.67686 1 31355 31355 19.257 2.1441 1 3611600 + 35050 22729 23374 23816 41191 41191 0.1138411897103424 LPIKAKQL 8 Unmodified _LPIKAKQL_ 0 0 0 REV__nc|ENSG00000088926|P03951-2|F11 REV__nc|ENSG00000088926|P03951-2|F11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7679138183594 2 455.807845 909.601138 1.127 0.00051368 1.0308 0.00046983 2.1577 0.0009835 455.80804042195837 71.466 0.38358 71.505 71.301 71.685 0.039032 38 17 3 0 0 0 8.7369 1 39308 39308 19.439 0 1 1922400 + 35051 17819 23375 23817 41192 41192 0.1427212907054809 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2373962402344 3 377.237504 1128.69068 -0.25019 -9.4381E-05 -0.41736 -0.00015744 -0.66755 -0.00025182 377.23725802980215 55.928 0.28007 55.45 55.3 55.58 -0.47798 37 13 4 0 0 0 0.13297 1 30323 30323 42.835 14.602 1 12778000 35052 486 23376 23818 41193 41193 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2372436523438 3 377.237504 1128.69068 -0.16459 -6.209E-05 -0.17262 -6.5118E-05 -0.33721 -0.00012721 377.2374050129408 55.59 0.38752 55.521 55.317 55.705 -0.068741 77 19 5 0 0 0 0.16005 2 30154 30154;30258 39.923 17.148 1 295330000 35053 486 23376 23818 41194;41195 41194 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3524169921875 2 565.352617 1128.69068 0.14962 8.459E-05 -0.34442 -0.00019472 -0.19479 -0.00011013 565.3522651761575 55.598 0.28824 55.529 55.358 55.646 -0.068741 43 14 4 0 0 0 0.022716 1 30197 30197 73.196 32.957 1 51098000 35054 486 23376 23818 41196 41196 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2386779785156 3 377.237504 1128.69068 0.71384 0.00026929 1.2114 0.00045698 1.9252 0.00072627 377.2380914322392 57.187 0.18348 57.121 56.998 57.181 -0.066036 14 8 2 0 0 0 0.1899 1 31105 31105 24.957 9.9999 1 3903400 35055 486 23376 23818 41197 41197 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2378234863281 3 377.237504 1128.69068 1.6437 0.00062008 -0.03633 -1.3705E-05 1.6074 0.00060637 377.2374488619356 60.861 0.55811 54.713 54.478 55.036 -6.1478 69 29 3 0 0 0 0.17714 2 39089 39089;39214 44.392 16.158 1 208130000 35056 486 23376 23818 41198;41199 41198 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3543090820312 2 565.352617 1128.69068 1.3112 0.0007413 0.0027816 1.5726E-06 1.314 0.00074287 565.3525915491488 60.88 0.40653 54.732 54.495 54.901 -6.1478 55 21 3 0 0 0 0.0096273 2 39106 39106;39227 88.364 45.982 1 114230000 35057 486 23376 23818 41200;41201 41200 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2377624511719 3 377.237504 1128.69068 0.90501 0.0003414 0.30141 0.0001137 1.2064 0.00045511 377.23755974935534 78.539 2.3894 72.363 70.504 72.894 -6.1757 230 138 3 0 0 0 0.13297 11 50332 50209;50332;50491;50612;50739;50856;50986;51112;51232;51355;51489 49.742 26.967 1 101390000 35058 486 23376 23818 41202;41203;41204;41205;41206;41207;41208;41209;41210;41211;41212 41203 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3539428710938 2 565.352617 1128.69068 0.61443 0.00034737 -0.32916 -0.00018609 0.28527 0.00016128 565.3526822559962 78.395 1.3976 72.219 71.346 72.743 -6.1757 147 83 2 0 0 0 0.027278 5 50757 50757;50908;51034;51236;51382 69.338 39.498 1 31453000 35059 486 23376 23818 41213;41214;41215;41216;41217 41213 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MSMS AL20221201_MKP_PDAC_01 4 565.3535766601562 2 565.352617 1128.69068 NaN NaN NaN NaN NaN NaN NaN 77.367 1 71.191 70.691 71.691 -6.1757 0 0 0 0.098035 1 50603 50603 51.415 19.298 1 35060 486 23376 23818 41218 41218 0.13148338959263128 LPIKDGKLVF 10 Unmodified _LPIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.352617 1128.69068 -0.088695 -5.0144E-05 0.1343 7.5928E-05 0.045607 2.5784E-05 565.3526905577127 55.939 0.14016 55.461 55.379 55.52 -0.47798 -0.033763 0.00048481 NaN 73.196 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1204100 35061 486 23376 23818 0.13148338959263128 LPIKEVPSL 9 Unmodified _LPIKEVPSL_ 0 0 0 ENSG00000126787|ENST00000247191|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;nc|ENSG00000126787|Q15398-1|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.3111572265625 2 498.310418 994.606283 -0.19318 -9.6266E-05 1.3944 0.00069484 1.2012 0.00059857 498.3111368426222 56.863 0.29237 56.378 56.186 56.479 -0.48554 33 13 3 0 0 0 0.0086209 1 30853 30853 89.401 7.5105 1 7175700 35062 3970 23377 23819 41219 41219 0.1087638814251477 LPIKEVPSL 9 Unmodified _LPIKEVPSL_ 0 0 0 ENSG00000126787|ENST00000247191|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;nc|ENSG00000126787|Q15398-1|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3113403320312 2 498.310418 994.606283 2.0501 0.0010216 -0.38618 -0.00019244 1.6639 0.00082912 498.31012715907553 62.787 0.55851 56.611 56.422 56.98 -6.1757 58 28 3 0 0 0 0.0085386 1 40476 40476 100.09 14.819 1 22011000 35063 3970 23377 23819 41220 41220 0.1087638814251477 LPIKFPHL 8 Unmodified _LPIKFPHL_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.2615661621094 2 482.802563 963.590573 1.0852 0.00052395 -0.058923 -2.8448E-05 1.0263 0.0004955 482.8026799935351 94.771 0.19746 88.596 88.496 88.693 -6.1757 19 11 2 0 0 0 8.7369 1 62826 62826 5.7604 0 1 9208300 35064 3445;4427;15642 23378 23820 41221 41221 0.10732146416137311 LPIKFPHLF 9 Unmodified _LPIKFPHLF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2270202636719 3 371.226939 1110.65899 0.23149 8.5936E-05 0.69995 0.00025984 0.93144 0.00034578 371.2272456660796 78.042 0.83702 78.094 77.915 78.752 0.052444 52 34 3 0 0 0 0.20428 1 43044 43044 22.736 14.581 1 4518300 35065 3445;4427;15642 23379 23821 41222 41222 0.1080839099597597 LPIKFPHLF 9 Unmodified _LPIKFPHLF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.2276611328125 3 371.226939 1110.65899 0.93919 0.00034865 0.65416 0.00024284 1.5933 0.00059149 371.2271202523264 98.734 0.14925 92.558 92.465 92.615 -6.1757 16 10 2 0 0 0 0.044011 1 65530 65530 47.749 20.12 1 30965000 35066 3445;4427;15642 23379 23821 41223 41223 0.1080839099597597 LPIKLRLIDTL 11 Unmodified _LPIKLRLIDTL_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2872314453125 3 432.286746 1293.83841 0.36025 0.00015573 0.88434 0.00038229 1.2446 0.00053802 432.28731794321203 75.297 0.28964 75.343 75.224 75.513 0.045959 26 13 3 0 0 0 0.65096 1 41535 41535 8.7518 4.3456 1 2576100 35067 9922 23380 23822 41224 41224 0.20324230493247342 LPIKMRITF 9 Unmodified _LPIKMRITF_ 0 0 0 ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF;ENST00000424478.5_1_14:45565874-45584113:+|nuORF ENSG00000185246|ENST00000355765|PRPF39 ENSG00000185246|ENST00000355765|PRPF39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5639953613281 3 373.563334 1117.66817 1.4814 0.00055339 0.23416 8.7472E-05 1.7155 0.00064087 373.56349767413985 91.505 0.44996 85.33 85.059 85.509 -6.1757 55 24 3 0 0 0 0.044042 2 60424 60424;60548 47.732 31.166 1 35638000 35068 9350 23381 23823 41225;41226 41225 0.11404416289997243 LPILKEKVAY 10 Unmodified _LPILKEKVAY_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.9136657714844 3 391.912908 1172.7169 1.4112 0.00055308 0.032671 1.2804E-05 1.4439 0.00056589 391.9130254492243 50.295 0.27753 44.756 44.594 44.872 -5.5391 28 17 2 0 0 0 0.34306 1 31538 31538 24.957 5.8131 1 9093200 35069 636 23382 23824 41227 41227 0.13744608130741653 LPILRPMVL 9 Unmodified _LPILRPMVL_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3372802734375 2 526.338455 1050.66236 1.243 0.00065426 0.21126 0.0001112 1.4543 0.00076546 526.3379760677728 97.883 0.094208 91.708 91.687 91.781 -6.1757 8 5 2 0 0 0 0.016184 1 64900 64900 67.344 18.998 1 9420600 35070 8538 23383 23825 41228 41228 0.13905317778335302 LPILSQIY 8 Unmodified _LPILSQIY_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7839965820312 2 473.784036 945.553519 1.2054 0.00057111 3.1578 0.0014961 4.3633 0.0020672 473.7841164948498 94.121 0.5468 87.945 87.769 88.315 -6.1757 65 31 3 0 0 0 0.32412 1 62288 62288 52.693 12.244 1 10874000 35071 10528 23384 23826 41229 41229 0.07856430079698384 LPINDPLQTVY 11 Unmodified _LPINDPLQTVY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.8450927734375 2 636.845353 1271.67615 NaN NaN NaN NaN NaN NaN NaN 77.347 1 77.347 76.847 77.847 0 0 0 0 0.90364 1 42997 42997 7.1017 4.1065 1 35072 5929 23385 23827 41230 41230 0.051182220204509576 LPINDPLQTVY 11 Unmodified _LPINDPLQTVY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8442993164062 2 636.845353 1271.67615 -1.1452 -0.00072935 0.22991 0.00014642 -0.91534 -0.00058293 636.8455769214215 77.895 0.34667 77.413 77.215 77.562 -0.4826 45 28 2 0 0 0 0.178 1 42613 42613 33.445 24.062 1 4673500 35073 5929 23385 23827 41231 41231 0.051182220204509576 LPINDPLQTVY 11 Unmodified _LPINDPLQTVY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8460083007812 2 636.845353 1271.67615 0.1088 6.9287E-05 1.0984 0.00069949 1.2072 0.00076878 636.8462786587941 85.52 0.33434 79.344 79.196 79.53 -6.1757 41 19 3 0 0 0 0.0056475 2 56304 56304;56442 74.2 51.463 1 22779000 35074 5929 23385 23827 41232;41233 41232 0.051182220204509576 LPINHQIIY 9 Unmodified _LPINHQIIY_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8191528320312 2 555.818941 1109.62333 0.62741 0.00034873 -0.14862 -8.2606E-05 0.47879 0.00026612 555.8187909970233 52.055 0.33208 51.622 51.437 51.77 -0.43367 56 16 5 0 0 0 0.038285 1 28161 28161 50.855 4.8341 1 61393000 35075 2094 23386 23828 41234 41234 0.0729030874831551 LPINHQIIY 9 Unmodified _LPINHQIIY_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.819580078125 2 555.818941 1109.62333 1.0348 0.00057515 0.50923 0.00028304 1.544 0.00085819 555.8191062183924 57.67 0.49743 51.643 51.372 51.87 -6.0275 64 27 3 0 0 0 0.026094 1 36885 36885 57.471 9.1255 1 315010000 35076 2094 23386 23828 41235 41235 0.0729030874831551 LPINHQIIY 9 Unmodified _LPINHQIIY_ 0 0 0 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 ENSG00000103035|ENST00000219313|PSMD7 MSMS AL20221201_MKP_PDAC_01 4 556.267822265625 2 555.818941 1109.62333 NaN NaN NaN NaN NaN NaN NaN 57.937 1 51.909 51.409 52.409 -6.0275 0 0 0 0.035065 1 37092 37092 64.236 18.215 1 35077 2094 23386 23828 41236 41236 0.0729030874831551 LPINLKTVF 9 Unmodified _LPINLKTVF_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.826171875 2 522.826235 1043.63792 0.071785 3.7531E-05 0.045942 2.402E-05 0.11773 6.1551E-05 522.8263744291213 76.685 0.46422 76.735 76.469 76.934 0.05011 32 19 2 0 0 0 0.11784 1 42250 42250 31.268 9.7314 1 2136600 35078 2063 23387 23829 41237 41237 0.11784380896460789 LPINNDDNY 9 Unmodified _LPINNDDNY_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B;nc|ENSG00000124171|Q9BYG5-2|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2503662109375 2 539.246003 1076.47745 0.63374 0.00034174 3.0916 0.0016671 3.7254 0.0020089 539.2478361851674 45.791 0.44714 40.836 40.656 41.104 -4.9549 45 29 2 0 0 0 0.03568 2 28168 28168;28316 52.268 20.151 1 22381000 35079 3754 23388 23830 41238;41239 41238 -0.0577261855839879 LPIPKKMKEF 10 Unmodified _LPIPKKMKEF_ 0 0 0 nc|ENSG00000176871|Q9NYS7-2|WSB2;ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-3|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 nc|ENSG00000176871|Q9NYS7-2|WSB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.5187377929688 3 410.914143 1229.7206 1.4095 0.00057918 0.29721 0.00012213 1.7067 0.00070131 410.9139648443011 41.933 0.23818 37.302 37.151 37.389 -4.6306 22 14 2 0 0 0 0.23047 1 25302 25302 14.957 14.957 1 6091300 35080 8626 23389 23831 41240 41240 0.11492954632967667 LPIPSKLLEF 10 Unmodified _LPIPSKLLEF_ 0 0 0 nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3544921875 2 578.85245 1155.69035 0.27025 0.00015644 0.19134 0.00011076 0.4616 0.0002672 578.8522952084646 87.629 0.20378 87.682 87.542 87.746 0.053345 12 8 2 0 0 0 0.14688 1 48721 48721 40.239 9.6027 1 8560400 35081 13790 23390 23832 41241 41241 0.11872919239408475 LPIPSKLLEF 10 Unmodified _LPIPSKLLEF_ 0 0 0 nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8525390625 2 578.85245 1155.69035 0.20293 0.00011746 0.73834 0.00042739 0.94126 0.00054485 578.8527387230449 99.012 0.1566 92.836 92.752 92.908 -6.1757 19 9 3 0 0 0 0.022716 1 65804 65804 73.196 31.357 1 107130000 35082 13790 23390 23832 41242 41242 0.11872919239408475 LPIPVDAKVGY 11 Unmodified _LPIPVDAKVGY_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.3392333984375 2 586.339707 1170.66486 -0.26955 -0.00015805 -0.49503 -0.00029025 -0.76458 -0.0004483 586.3391334808609 60.805 0.2244 60.316 60.189 60.413 -0.48932 18 10 2 0 0 0 0.31454 1 33092 33092 26.021 3.2844 1 6372800 35083 1796 23391 23833 41243 41243 0.08635444716992424 LPIPVICVTY 10 Carbamidomethyl (C) _LPIPVIC(Carbamidomethyl (C))VTY_ LPIPVIC(1)VTY LPIPVIC(57)VTY 0 1 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3333740234375 2 587.83066 1173.64677 2.1418 0.001259 0.89717 0.00052739 3.039 0.0017864 587.8306891057225 94.511 0.45597 94.525 94.212 94.668 0.014244 40 16 4 0 0 0 0.055875 1 52493 52493 56.541 38.406 1 4061600 35084 4838 23392 23834 41244 41244 494 0.0668898647061269 LPIPVICVTY 10 Carbamidomethyl (C) _LPIPVIC(Carbamidomethyl (C))VTY_ LPIPVIC(1)VTY LPIPVIC(94)VTY 0 1 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8324584960938 2 587.83066 1173.64677 0.83033 0.00048809 -0.055346 -3.2534E-05 0.77498 0.00045556 587.8306088084091 99.983 0.1283 93.807 93.727 93.855 -6.1757 20 8 4 0 0 0 0.0066054 1 66730 66730 93.883 65.397 1 70484000 35085 4838 23392 23834 41245 41245 494 0.0668898647061269 LPIQLPSTF 9 Unmodified _LPIQLPSTF_ 0 0 0 REV__ENST00000529378.1_1_8:146171322-146173480:-|nuORF REV__ENST00000529378.1_1_8:146171322-146173480:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7511901855469 2 508.294768 1014.57498 NaN NaN NaN NaN NaN NaN NaN 79.879 1 79.389 78.889 79.889 -0.48932 0 0 0 0.58748 1 43752 43752 13.042 2.9685 1 + 35086 28422 23393 23835 41246 41246 0.06827815108420054 LPIRFNLTY 9 Unmodified _LPIRFNLTY_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENSG00000185418|ENST00000335968|TARS3;ENST00000509410.1_1_5:33461160-33466106:+|nuORF;nc|ENSG00000185418|A2RTX5-2|TARS3 ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.826904296875 2 568.826766 1135.63898 0.24648 0.0001402 -0.89821 -0.00051093 -0.65173 -0.00037072 568.8260828723846 72.968 0.36254 73.01 72.803 73.166 0.041733 47 17 4 0 0 0 0.011671 1 40177 40177 75.761 37.787 1 25706000 35087 2966 23394 23836 41247 41247 0.07658595265365875 LPIRFNLTY 9 Unmodified _LPIRFNLTY_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENSG00000185418|ENST00000335968|TARS3;ENST00000509410.1_1_5:33461160-33466106:+|nuORF;nc|ENSG00000185418|A2RTX5-2|TARS3 ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8279418945312 2 568.826766 1135.63898 1.3108 0.00074563 1.0877 0.00061869 2.3985 0.0013643 568.8273129298052 89.375 0.8948 83.2 82.685 83.58 -6.1757 147 49 4 0 0 0 0.0086722 4 58707 58707;58847;58970;59094 88.954 50.98 1 67255000 35088 2966 23394 23836 41248;41249;41250;41251 41248 0.07658595265365875 LPIRGFVGY 9 Unmodified _LPIRGFVGY_ 0 0 0 ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2955322265625 2 511.295102 1020.57565 0.58819 0.00030074 0.69164 0.00035363 1.2798 0.00065437 511.29559924767733 59.851 0.40457 59.798 59.554 59.958 -0.053062 46 19 3 0 0 0 0.012148 1 32628 32628 74.423 32.328 1 19450000 35089 1892 23395 23837 41252 41252 0.06618654548140057 LPIRRSAVL 9 Unmodified _LPIRRSAVL_ 0 0 0 nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.8352661132812 2 512.834926 1023.6553 0.041241 2.115E-05 0.063832 3.2735E-05 0.10507 5.3885E-05 512.8350765156024 31.935 0.26275 31.966 31.822 32.084 0.030106 18 11 2 0 0 0 0.2001 1 16740 16740 23.148 5.0134 1 3755900 35090 1954 23396 23838 41253 41253 0.14441721222135584 LPISGTHCI 9 Carbamidomethyl (C) _LPISGTHC(Carbamidomethyl (C))I_ LPISGTHC(1)I LPISGTHC(42)I 0 1 0 ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2 MSMS AL20221201_MKP_PDAC_01 4 498.9440307617188 2 499.260402 996.506251 NaN NaN NaN NaN NaN NaN NaN 44.622 1 39.77 39.27 40.27 -4.852 0 0 0 0.10545 1 27263 27263 42.095 6.0504 1 35091 7781;5587 23397 23839 41254 41254 570 0.007858275370722367 LPISIWDYHF 10 Unmodified _LPISIWDYHF_ 0 0 0 REV__ENSG00000142959|ENST00000372207|BEST4 REV__ENSG00000142959|ENST00000372207|BEST4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8882446289062 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 49.398 1 49.354 48.854 49.854 -0.04369 0 0 0 0.96627 1 26688 26688 2.086 0.63089 1 + 35092 20598 23398 23840 41255 41255 0.011222740571611212 LPISSHVATM 10 Oxidation (M) _LPISSHVATM(Oxidation (M))_ LPISSHVATM(1) LPISSHVATM(59) 0 0 1 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2785034179688 2 536.278792 1070.54303 -0.66381 -0.00035599 0.51092 0.000274 -0.15289 -8.1993E-05 536.2792339610738 32.108 0.18127 32.108 32.002 32.184 0 14 8 2 0 0 0 0.04925 1 16748 16748 58.679 30.192 1 1747900 35093 4696 23399 23841 41256 41256 851 0.010580793629515028 LPISSHVATM 10 Oxidation (M) _LPISSHVATM(Oxidation (M))_ LPISSHVATM(1) LPISSHVATM(110) 0 0 1 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2807006835938 2 536.278792 1070.54303 -0.10694 -5.7349E-05 1.0371 0.00055618 0.93017 0.00049883 536.279408817292 32.076 0.25101 31.947 31.818 32.069 -0.12915 25 9 3 0 0 0 0.0022539 1 16672 16672 107.19 63.329 1 5660500 35094 4696 23399 23841 41257 41257 851 0.010580793629515028 LPISSHVATM 10 Unmodified _LPISSHVATM_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2813110351562 2 528.281334 1054.54812 0.96513 0.00050986 -0.75926 -0.0004011 0.20587 0.00010876 528.2811362229106 49.312 0.24458 43.916 43.839 44.083 -5.3961 19 14 2 0 0 0 0.0073675 1 30839 30839 92.491 54.517 1 45317000 35095 4696 23399 23842 41258 41258 0.023023832255830712 LPISVLSF 8 Unmodified _LPISVLSF_ 0 0 0 REV__ENSG00000111371|ENST00000398637|SLC38A1 REV__ENSG00000111371|ENST00000398637|SLC38A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.5232543945312 1 875.523682 874.516405 0.82239 0.00072002 -0.35664 -0.00031225 0.46575 0.00040778 875.5226609504833 100.54 0.059395 94.36 94.33 94.389 -6.1757 5 3 2 0 0 0 0.07972 1 67257 67257 106.85 0 1 7880100 + 35096 18751 23400 23843 41259 41259 0.07412758533951092 LPITFGDKF 9 Unmodified _LPITFGDKF_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2884521484375 2 519.286943 1036.55933 0.76402 0.00039675 -0.22598 -0.00011735 0.53804 0.0002794 519.2869973340815 66.809 0.28811 66.827 66.673 66.961 0.018028 20 13 2 0 0 0 0.062454 1 36680 36680 41.956 9.6501 1 4678600 35097 1517 23401 23844 41260 41260 0.042515285913850676 LPIVTPAL 8 Unmodified _LPIVTPAL_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2685546875 2 412.268022 822.521491 NaN NaN NaN NaN NaN NaN NaN 78.125 1 77.642 77.142 78.142 -0.4826 0 0 0 0.38293 1 42787 42787 56.048 3.3552 1 35098 9058 23402 23845 41261 41261 0.103130623965626 LPIVTPAL 8 Unmodified _LPIVTPAL_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2684326171875 2 412.268022 822.521491 0.8281 0.0003414 0.18283 7.5376E-05 1.0109 0.00041677 412.2680042485068 85.727 0.46886 79.552 79.308 79.777 -6.1757 36 26 2 0 0 0 0.24182 1 56430 56430 63.394 10.701 1 12212000 35099 9058 23402 23845 41262 41262 0.103130623965626 LPIWDSTII 9 Unmodified _LPIWDSTII_ 0 0 0 REV__nc|ENSG00000197614|Q13361-2|MFAP5 REV__nc|ENSG00000197614|Q13361-2|MFAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2027282714844 3 353.202459 1056.58555 1.161 0.00041007 -0.094454 -3.3362E-05 1.0665 0.00037671 353.20256461651894 17.545 0.21966 14.958 14.871 15.091 -2.5866 93 44 3 0 0 0 0.30562 1 9148 9148 11.495 0.6952 1 8038700 + 35100 23947 23403 23846 41263 41263 0.059517977628502194 LPIYGQDVIY 10 Unmodified _LPIYGQDVIY_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8169555664062 2 590.816064 1179.61758 0.68723 0.00040603 -0.28245 -0.00016688 0.40478 0.00023915 590.8160122408367 73.222 0.36878 72.746 72.563 72.932 -0.47588 34 16 3 0 0 0 0.24625 1 40077 40077 30.637 18.105 1 1653600 35101 7598 23404 23847 41264 41264 0.034951654459973724 LPKAFEEMY 9 Oxidation (M) _LPKAFEEM(Oxidation (M))Y_ LPKAFEEM(1)Y LPKAFEEM(66)Y 0 0 1 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.273681640625 2 572.273175 1142.5318 0.17649 0.000101 0.10596 6.0637E-05 0.28244 0.00016163 572.2730890687474 43.714 0.40996 43.714 43.486 43.896 0 38 21 2 0 0 0 0.017075 2 23801 23683;23801 66.457 34.151 1 38722000 35102 9762 23405 23848 41265;41266 41266 1570 -0.03376742731165905 LPKAFEEMY 9 Oxidation (M) _LPKAFEEM(Oxidation (M))Y_ LPKAFEEM(1)Y LPKAFEEM(69)Y 0 0 1 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2738037109375 2 572.273175 1142.5318 0.97078 0.00055555 0.16166 9.2512E-05 1.1324 0.00064806 572.2731777847205 49.278 0.35055 43.882 43.717 44.068 -5.3961 36 22 2 0 0 0 0.014417 1 30827 30827 69.105 47.358 1 48496000 35103 9762 23405 23848 41267 41267 1570 -0.03376742731165905 LPKAFEEMY 9 Unmodified _LPKAFEEMY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.274658203125 2 564.275718 1126.53688 -0.74378 -0.0004197 0.83631 0.00047191 0.092531 5.2213E-05 564.2759351938236 56.4 0.15427 55.915 55.787 55.941 -0.48554 10 7 2 0 0 0 0.20428 1 30604 30604 22.736 6.8891 1 3354600 35104 9762 23405 23849 41268 41268 -0.02132438868557074 LPKAFEEMY 9 Unmodified _LPKAFEEMY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2753295898438 2 564.275718 1126.53688 0.52744 0.00029762 -0.64166 -0.00036208 -0.11422 -6.4454E-05 564.2749185683036 62.107 0.36395 55.931 55.674 56.038 -6.1757 43 20 3 0 0 0 0.011671 1 39955 39955 75.761 43.455 1 70213000 35105 9762 23405 23849 41269 41269 -0.02132438868557074 LPKAGSITY 9 Unmodified _LPKAGSITY_ 0 0 0 ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2711791992188 2 475.271293 948.528032 0.93521 0.00044448 -0.50603 -0.0002405 0.42918 0.00020398 475.27094233745925 42.843 0.69755 38.159 37.747 38.444 -4.6846 113 45 4 0 0 0 0.032796 1 25733 25733 53.833 7.8118 1 180700000 35106 9413 23406 23850 41270 41270 0.051709555572642785 LPKATILDL 9 Unmodified _LPKATILDL_ 0 0 0 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 ENSG00000108829|ENST00000225972|LRRC59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.3106994628906 2 492.310418 982.606283 0.55952 0.00027546 -0.18607 -9.1604E-05 0.37344 0.00018385 492.31029715988024 68.616 0.29752 68.135 67.967 68.264 -0.48071 25 13 2 0 0 0 0.010301 1 37491 37491 79.596 13.14 1 3427600 35107 2611 23407 23851 41271 41271 0.11428388142530821 LPKCKHEF 8 Carbamidomethyl (C) _LPKC(Carbamidomethyl (C))KHEF_ LPKC(1)KHEF LPKC(130)KHEF 0 1 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7740478515625 2 529.776219 1057.53789 1.021 0.00054089 -1.3244 -0.00070161 -0.30338 -0.00016072 529.7755388204869 19.513 0.31691 16.857 16.713 17.03 -2.6564 76 29 3 0 0 0 0.063507 2 10298 10298;10410 126.57 48.417 1 23955000 35108 7082 23408 23852 41272;41273 41272 691 0.011418202910135733 LPKDHILSV 9 Unmodified _LPKDHILSV_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3059387207031 2 511.305667 1020.59678 1.1844 0.00060559 0.50566 0.00025854 1.6901 0.00086414 511.30590150356466 63.802 0.48551 63.792 63.571 64.056 -0.010532 55 19 4 0 0 0 0.05447 1 34853 34853 43.858 2.0187 1 30371000 35109 5127 23409 23853 41274 41274 0.08730619857010424 LPKDQGITL 9 Unmodified _LPKDQGITL_ 0 0 0 nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43478389-43485079:+|nuORF;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF nc|ENSG00000166946|O95273-2|CCNDBP1 nc|ENSG00000166946|O95273-2|CCNDBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7901916503906 2 492.78985 983.565146 NaN NaN NaN NaN NaN NaN NaN 44.314 1 44.314 43.814 44.814 0 0 0 0 0.02218 1 24109 24109 75.761 6.6559 1 35110 7553 23410 23854 41275 41275 0.07270627103048355 LPKEACLSF 9 Unmodified _LPKEACLSF_ 0 0 0 REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2655944824219 2 504.265153 1006.51575 0.37961 0.00019142 -0.55701 -0.00028088 -0.1774 -8.9456E-05 504.2652643546679 79.522 0.66472 79.033 78.593 79.257 -0.48933 83 28 4 0 0 0 0.095405 1 43578 43578 34.102 1.797 1 3831800 + 35111 27907 23411 23855 41276 41276 0.012755958225852737 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2217407226562 3 368.221742 1101.6434 0.32985 0.00012146 -0.29845 -0.0001099 0.031405 1.1564E-05 368.2215946711754 53.316 0.29561 53.316 53.166 53.462 0 33 12 4 0 0 0 0.073961 1 29526 29526 39.213 14.256 1 12541000 35112 4768 23412 23856 41277 41277 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.82958984375 2 551.828975 1101.6434 0.66675 0.00036793 -0.51872 -0.00028625 0.14803 8.1685E-05 551.828780677161 53.316 0.22484 53.316 53.195 53.42 0 16 9 2 0 0 0 0.049912 1 29559 29559 47.732 17.095 1 3983700 35113 4768 23412 23856 41278 41278 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2218322753906 3 368.221742 1101.6434 0.4276 0.00015745 -0.29309 -0.00010792 0.13451 4.9528E-05 368.221575454323 53.81 0.35599 53.344 53.17 53.526 -0.46664 60 17 5 0 0 0 0.02676 2 29075 29075;29185 57.108 26.404 1 116330000 35114 4768 23412 23856 41279;41280 41279 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8299560546875 2 551.828975 1101.6434 0.53342 0.00029436 -0.39097 -0.00021575 0.14245 7.8607E-05 551.8287152089531 53.824 0.27888 53.358 53.208 53.487 -0.46664 35 13 3 0 0 0 0.0084414 2 29094 29094;29197 97.741 61.235 1 32965000 35115 4768 23412 23856 41281;41282 41281 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2218017578125 3 368.221742 1101.6434 -0.21696 -7.9889E-05 0.42267 0.00015564 0.20571 7.5748E-05 368.221895696636 53.448 0.23987 53.385 53.241 53.481 -0.063423 31 11 3 0 0 0 0.16019 1 28964 28964 27.088 7.4624 1 16233000 35116 4768 23412 23856 41283 41283 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8284301757812 2 551.828975 1101.6434 -0.13424 -7.4075E-05 0.16781 9.2604E-05 0.033577 1.8529E-05 551.8291371774382 53.439 0.17862 53.376 53.284 53.463 -0.063423 18 8 3 0 0 0 0.008597 1 28984 28984 96.936 65.667 1 5751900 35117 4768 23412 23856 41284 41284 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.22216796875 3 368.221742 1101.6434 1.9888 0.00073234 -0.50291 -0.00018518 1.4859 0.00054715 368.22148214022246 59.019 0.54491 52.945 52.683 53.228 -6.0745 89 29 4 0 0 0 0.01861 3 37886 37758;37886;38021 64.927 30.705 1 229820000 35118 4768 23412 23856 41285;41286;41287 41286 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8287353515625 2 551.828975 1101.6434 1.3784 0.00076067 -0.82523 -0.00045539 0.55321 0.00030528 551.8284134073836 59.018 0.36184 52.943 52.719 53.081 -6.0745 51 19 4 0 0 0 0.012024 2 37913 37785;37913 80.676 42.702 1 82244000 35119 4768 23412 23856 41288;41289 41289 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2214660644531 3 368.221742 1101.6434 1.3013 0.00047918 -0.9992 -0.00036793 0.30214 0.00011126 368.22126280611104 69.682 0.25394 63.506 63.394 63.648 -6.1757 18 13 2 0 0 0 0.058763 1 45489 45489 42.835 19.034 1 22784000 35120 4768 23412 23856 41290 41290 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2216491699219 3 368.221742 1101.6434 1.4425 0.00053117 -0.88168 -0.00032465 0.56084 0.00020651 368.2214059903536 70.036 0.26099 63.86 63.746 64.007 -6.1757 23 15 2 0 0 0 0.040337 1 45758 45758 49.742 14.13 1 25724000 35121 4768 23412 23856 41291 41291 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2212524414062 3 368.221742 1101.6434 1.5404 0.00056719 -0.42186 -0.00015534 1.1185 0.00041185 368.2215270831826 70.372 0.43742 64.197 63.989 64.427 -6.1757 37 23 2 0 0 0 0.012586 1 45905 45905 73.196 36.122 1 24648000 35122 4768 23412 23856 41292 41292 0.09664059688270754 LPKEDLIKF 9 Unmodified _LPKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2231140136719 3 368.221742 1101.6434 1.6448 0.00060567 -0.25899 -9.5367E-05 1.3859 0.0005103 368.2217438608391 70.683 0.37202 64.508 64.333 64.705 -6.1757 27 19 2 0 0 0 0.02676 1 46193 46193 57.108 26.404 1 27305000 35123 4768 23412 23856 41293 41293 0.09664059688270754 LPKEHAASL 9 Unmodified _LPKEHAASL_ 0 0 0 nc|ENSG00000140365|Q9H0A8-2|COMMD4;ENSG00000140365|ENST00000267935|COMMD4 nc|ENSG00000140365|Q9H0A8-2|COMMD4 nc|ENSG00000140365|Q9H0A8-2|COMMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2762451171875 2 483.274367 964.53418 0.28634 0.00013838 0.8674 0.00041919 1.1537 0.00055757 483.2748356239391 23.965 0.27635 21.138 21.008 21.284 -2.8273 35 15 3 0 0 0 0.024189 1 12971 12971 59.368 11.774 1 7476200 35124 5227 23413 23857 41294 41294 0.05049473788801606 LPKESISIMD 10 Unmodified _LPKESISIMD_ 0 0 0 REV__ENST00000505323.1_1_5:108260361-108380497:+|nuORF REV__ENST00000505323.1_1_5:108260361-108380497:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2028503417969 3 378.20213 1131.58456 NaN NaN NaN NaN NaN NaN NaN 17.641 1 17.641 17.141 18.141 0 0 0 0 0.99091 1 8709 8709 0.69767 0.24315 1 + 35125 21067 23414 23858 41295 41295 0.02403215331651154 LPKFEKNFY 9 Unmodified _LPKFEKNFY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8817749023438 3 395.881608 1184.623 -0.13649 -5.4034E-05 -0.19138 -7.5765E-05 -0.32787 -0.0001298 395.88168960630804 44.407 0.24152 44.385 44.224 44.466 -0.022068 24 11 3 0 0 0 0.094149 1 23797 23797 26.021 15.122 1 14130000 35126 2594;1767 23415 23859 41296 41296 0.03806889028464866 LPKFEKNFY 9 Unmodified _LPKFEKNFY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8814697265625 3 395.881608 1184.623 1.3868 0.00054902 -0.95668 -0.00037873 0.43015 0.00017029 395.8811009001594 49.534 0.32475 44.137 43.973 44.298 -5.3961 35 20 2 0 0 0 0.018301 2 30909 30909;31053 51.415 27.877 1 34552000 35127 2594;1767 23415 23859 41297;41298 41297 0.03806889028464866 LPKFEKNFY 9 Unmodified _LPKFEKNFY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000585223.1_1_17:62500698-62502378:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MSMS AL20221201_MKP_PDAC_01 4 593.3201293945312 2 593.318774 1184.623 NaN NaN NaN NaN NaN NaN NaN 49.597 1 44.058 43.558 44.558 -5.5391 0 0 0 0.076083 1 30999 30999 49.554 24.155 1 35128 2594;1767 23415 23859 41299 41299 0.03806889028464866 LPKGKALEL 9 Unmodified _LPKGKALEL_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.8104553222656 2 484.810585 967.606617 0.5494 0.00026635 -0.091675 -4.4445E-05 0.45772 0.00022191 484.8104530082838 38.459 0.31554 34.09 33.9 34.215 -4.3689 29 19 2 0 0 0 0.047788 1 22648 22648 45.7 1.8413 1 15014000 35129 8311 23416 23860 41300 41300 0.12151807862369424 LPKHKPGF 8 Unmodified _LPKHKPGF_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2774963378906 2 462.276712 922.538872 0.54487 0.00025188 0.29127 0.00013465 0.83614 0.00038653 462.2767594536485 48.059 0.46002 48.021 47.743 48.203 -0.038647 56 22 3 0 0 0 0.61462 1 25948 25948 24.674 7.5873 1 10295000 35130 4148 23417 23861 41301 41301 0.0745040272222468 LPKHKPGF 8 Unmodified _LPKHKPGF_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 462.276712 922.538872 0.54487 0.00025188 0.29127 0.00013465 0.83614 0.00038653 462.2767594536485 48.059 0.46002 48.021 47.743 48.203 -0.038647 0 0 NaN 24.674 56 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10295000 35131 4148 23417 23861 0.0745040272222468 LPKIYQNL 8 Unmodified _LPKIYQNL_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7962036132812 2 494.794935 987.575317 1.0743 0.00053155 0.67373 0.00033336 1.748 0.00086491 494.7951672195149 63.609 0.73723 57.434 57.143 57.88 -6.1757 101 41 3 0 0 0 0.35156 1 41023 41023 49.669 0.11463 1 205740000 35132 6406 23418 23862 41302 41302 0.08103234828263339 LPKKDIIKF 9 Unmodified _LPKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5180053710938 3 367.905865 1100.69577 -0.47288 -0.00017398 0.44213 0.00016266 -0.030752 -1.1314E-05 367.90590045621377 36.445 0.22652 36.195 36.132 36.358 -0.2497 13 10 2 0 0 0 0.21254 1 19167 19167 6.6304 1.2277 1 2182500 35133 1830 23419 23863 41303 41303 0.1494464282188801 LPKKDIIKF 9 Unmodified _LPKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.9053344726562 3 367.905865 1100.69577 -0.22401 -8.2413E-05 0.42089 0.00015485 0.19689 7.2435E-05 367.90596565428365 36.134 0.35668 36.159 35.969 36.326 0.024967 58 15 5 0 0 0 0.098164 2 19074 19074;19185 31.636 17.418 1 83786000 35134 1830 23419 23863 41304;41305 41304 0.1494464282188801 LPKKDIIKF 9 Unmodified _LPKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.35498046875 2 551.35516 1100.69577 -0.14879 -8.2035E-05 0.046591 2.5688E-05 -0.1022 -5.6347E-05 551.3550625051258 36.131 0.23829 36.156 36.012 36.25 0.024967 21 10 3 0 0 0 0.037253 1 19108 19108 51.415 30.962 1 5802400 35135 1830 23419 23863 41306 41306 0.1494464282188801 LPKKDIIKF 9 Unmodified _LPKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.9059448242188 3 367.905865 1100.69577 0.9194 0.00033825 -0.17457 -6.4225E-05 0.74483 0.00027403 367.9056354145223 40.079 0.67953 35.55 35.291 35.971 -4.5294 138 53 3 0 0 0 0.029718 3 23930 23793;23930;24062 49.742 14.955 1 122040000 35136 1830 23419 23863 41307;41308;41309 41308 0.1494464282188801 LPKKDIIKF 9 Unmodified _LPKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MSMS AL20221201_MKP_PDAC_01 4 551.3550415039062 2 551.35516 1100.69577 NaN NaN NaN NaN NaN NaN NaN 40.111 1 35.582 35.082 36.082 -4.5294 0 0 0 0.01832 1 23913 23913 80.676 49.408 1 35137 1830 23419 23863 41310 41310 0.1494464282188801 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.2320251464844 3 397.232418 1188.67542 -0.017767 -7.0577E-06 -0.31201 -0.00012394 -0.32978 -0.000131 397.2322994664694 37.449 0.26952 37.449 37.316 37.586 0 38 14 3 0 0 0 0.20962 1 19887 19887 22.775 5.7264 1 15665000 35138 2018 23420 23864 41311 41311 0.08863427371420585 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.3450317382812 2 595.344989 1188.67542 0.023741 1.4134E-05 -0.72537 -0.00043185 -0.70163 -0.00041771 595.3444826956805 37.459 0.27128 37.459 37.333 37.604 0 23 14 2 0 0 0 0.087164 1 19913 19913 49.527 14.595 1 5496300 35139 2018 23420 23864 41312 41312 0.08863427371420585 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2327270507812 3 397.232418 1188.67542 -0.018271 -7.2577E-06 0.029822 1.1846E-05 0.011552 4.5887E-06 397.2323825732872 37.715 0.27694 37.444 37.303 37.58 -0.27133 28 12 3 0 0 0 0.18021 1 19821 19821 24.882 7.0184 1 7704300 35140 2018 23420 23864 41313 41313 0.08863427371420585 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3457641601562 2 595.344989 1188.67542 1.0302 0.00061334 -0.38736 -0.00023062 0.64286 0.00038272 595.344785720581 41.899 0.42305 37.291 37.077 37.5 -4.6079 59 26 3 0 0 0 0.01173 2 25258 25122;25258 84.522 40.75 1 20984000 35141 2018 23420 23864 41314;41315 41315 0.08863427371420585 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2330017089844 3 397.232418 1188.67542 1.5495 0.0006155 -0.092503 -3.6745E-05 1.457 0.00057876 397.23224765335925 41.913 0.47039 37.305 37.03 37.5 -4.6079 88 29 4 0 0 0 0.38092 1 25244 25244 24.882 9.1429 1 48554000 35142 2018 23420 23864 41316 41316 0.08863427371420585 LPKKEDALLY 10 Unmodified _LPKKEDALLY_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000485261.1_1_X:153607844-153608453:+|nuORF;ENST00000486738.5_1_X:153607844-153608453:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.344989 1188.67542 0.044902 2.6732E-05 -0.18557 -0.00011048 -0.14067 -8.3746E-05 595.344876609542 37.745 0.16874 37.474 37.375 37.544 -0.27133 0.065951 0.0003146 NaN 84.522 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2885900 35143 2018 23420 23864 0.08863427371420585 LPKKEGLSF 9 Unmodified _LPKKEGLSF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.8001098632812 2 509.800217 1017.58588 NaN NaN NaN NaN NaN NaN NaN 34.247 1 34.247 33.747 34.747 0 0 0 0 0.059498 1 18029 18029 53.833 0 1 35144 6474 23421 23865 41317 41317 0.07779217482720924 LPKKEGLSF 9 Unmodified _LPKKEGLSF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8008117675781 2 509.800217 1017.58588 -0.48976 -0.00024968 -0.019539 -9.9609E-06 -0.5093 -0.00025964 509.80073525836565 34.397 0.23737 34.206 34.074 34.312 -0.19132 31 9 4 0 0 0 0.0074135 1 17948 17948 110.67 7.3212 1 15315000 35145 6474 23421 23865 41318 41318 0.07779217482720924 LPKKEGLSF 9 Unmodified _LPKKEGLSF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8000183105469 2 509.800217 1017.58588 0.41811 0.00021315 -1.3357 -0.00068092 -0.91754 -0.00046776 509.7999586186519 34.123 0.23194 34.151 34.014 34.246 0.028934 29 10 4 0 0 0 0.011671 1 17962 17962 75.761 0 1 3314900 35146 6474 23421 23865 41319 41319 0.07779217482720924 LPKKEGLSF 9 Unmodified _LPKKEGLSF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7998046875 2 509.800217 1017.58588 0.86048 0.00043867 -0.58494 -0.0002982 0.27554 0.00014047 509.7997802485989 38.018 0.45506 33.649 33.4 33.855 -4.3689 62 26 3 0 0 0 0.021948 2 22458 22327;22458 61.602 6.0992 1 82431000 35147 6474 23421 23865 41320;41321 41321 0.07779217482720924 LPKKFVDIF 9 Unmodified _LPKKFVDIF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.835205078125 2 553.83406 1105.65357 1.2045 0.00066709 -0.71168 -0.00039415 0.49281 0.00027294 553.8337133994254 91.802 0.23307 85.626 85.49 85.723 -6.1757 21 12 2 0 0 0 0.016448 1 60695 60695 82.529 40.69 1 12126000 35148 8367 23422 23866 41322 41322 0.10496667413508476 LPKKSGQRL 9 Unmodified _LPKKSGQRL_ 0 0 0 REV__ENSG00000100395|ENST00000216237|L3MBTL2 REV__ENSG00000100395|ENST00000216237|L3MBTL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.3209838867188 2 513.824558 1025.63456 0.36155 0.00018577 -0.11496 -5.9071E-05 0.24658 0.0001267 513.8245526013378 46.404 0.53645 41.324 40.938 41.475 -5.0805 87 43 3 0 0 0 0.21564 1 28474 28474 3.9444 0 1 239440000 + 35149 18060 23423 23867 41323 41323 0.12277130842471706 LPKLASVPSP 10 Unmodified _LPKLASVPSP_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8081665039062 2 504.808042 1007.60153 1.4289 0.00072132 0.5527 0.00027901 1.9816 0.0010003 504.80799900735525 41.895 0.31681 37.287 37.077 37.394 -4.6079 31 19 2 0 0 0 0.23548 1 25216 25216 31.268 2.1868 1 10088000 + 35150 24504 23424 23868 41324 41324 0.09803503999751229 LPKLASVPSP 10 Unmodified _LPKLASVPSP_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.808042 1007.60153 0.42977 0.00021695 -0.26319 -0.00013286 0.16658 8.4091E-05 504.80801779758264 37.442 0.23589 37.442 37.35 37.586 0 0.077691 -0.00048159 NaN 31.268 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3554300 + 35151 24504 23424 23868 0.09803503999751229 LPKLASVPSP 10 Unmodified _LPKLASVPSP_ 0 0 0 REV__ENSG00000251322|ENST00000262795|SHANK3 REV__ENSG00000251322|ENST00000262795|SHANK3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 504.808042 1007.60153 1.4289 0.00072132 0.5527 0.00027901 1.9816 0.0010003 504.80799900735525 41.895 0.31681 37.287 37.077 37.394 -4.6079 -0.077691 0.00034216 NaN 31.268 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 10088000 + 35152 24504 23424 23868 0.09803503999751229 LPKLFQKKK 9 Unmodified _LPKLFQKKK_ 0 0 0 REV__ENST00000316077.13_1_X:135312567-135312624:-|nuORF REV__ENST00000316077.13_1_X:135312567-135312624:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.2187194824219 3 377.253376 1128.7383 1.4423 0.00054411 -0.12496 -4.7142E-05 1.3173 0.00049696 377.253364471795 83.878 0.30438 77.702 77.587 77.891 -6.1757 28 15 2 0 0 0 0.20883 1 55139 55139 8.1555 2.4237 1 5883600 + 35153 25467 23425 23869 41325 41325 0.17908037950110156 LPKLRKRMRK 10 Unmodified _LPKLRKRMRK_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.4387817382812 2 663.437358 1324.86016 1.2162 0.0008069 2.6174 0.0017365 3.8337 0.0025434 663.4387579587043 103.44 0.092651 97.264 97.224 97.317 -6.1757 17 14 2 0 0 0 0.72247 1 69349 69349 0.40072 0 1 5270900 35154 2865 23426 23870 41326 41326 0.2107275676082736 LPKLYVKL 8 Unmodified _LPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3252258300781 2 487.325871 972.637189 0.53908 0.00026271 -0.6761 -0.00032948 -0.13702 -6.6776E-05 487.3255571545312 59.336 0.26482 59.283 59.134 59.399 -0.053062 35 13 3 0 0 0 0.12393 2 32403 32295;32403 92.822 25.787 1 21116000 35155 9994 23427 23871 41327;41328 41328 0.14977586247414365 LPKLYVKL 8 Unmodified _LPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.3260498046875 2 487.325871 972.637189 0.23997 0.00011694 0.075353 3.6721E-05 0.31532 0.00015366 487.3258680720714 84.757 0.83932 78.581 77.981 78.82 -6.1757 108 48 3 0 0 0 0.078546 3 55904 55632;55770;55904 112.59 38.197 1 37277000 35156 9994 23427 23871 41329;41330;41331 41331 0.14977586247414365 LPKNDLITY 9 Unmodified _LPKNDLITY_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.8042602539062 2 538.802957 1075.59136 0.75338 0.00040592 0.21837 0.00011766 0.97175 0.00052358 538.8040110256245 47.677 0.31725 47.677 47.427 47.745 0 34 14 3 0 0 0 0.0094097 1 26093 26093 82.529 26.352 1 14750000 35157 1608 23428 23872 41332 41332 0.05658896274530889 LPKNDLITY 9 Unmodified _LPKNDLITY_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8036499023438 2 538.802957 1075.59136 0.4489 0.00024187 -0.0071686 -3.8625E-06 0.44173 0.00023801 538.8028969995672 47.918 0.58493 47.565 47.105 47.69 -0.3526 49 28 3 0 0 0 0.0086722 2 25649 25649;25756 88.954 30.275 1 37936000 35158 1608 23428 23872 41333;41334 41333 0.05658896274530889 LPKNDLITY 9 Unmodified _LPKNDLITY_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.80322265625 2 538.802957 1075.59136 1.0567 0.00056937 0.012931 6.9674E-06 1.0697 0.00057634 538.8031269569822 53.691 0.64192 47.886 47.467 48.109 -5.8042 95 41 3 0 0 0 0.010611 3 33957 33821;33957;34087 78.728 20.049 1 133780000 35159 1608 23428 23872 41335;41336;41337 41336 0.05658896274530889 LPKNKNRNR 9 Unmodified _LPKNKNRNR_ 0 0 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3419799804688 2 570.341438 1138.66832 3.7942 0.002164 -2.4582 -0.001402 1.336 0.00076196 570.3400387951122 98.374 0.28709 98.346 98.17 98.458 -0.028282 30 10 4 0 0 0 0.49272 1 54663 54663 7.9102 1.187 1 1187800 35160 9810 23429 23873 41338 41338 0.10453552334206506 LPKNKNRNR 9 Unmodified _LPKNKNRNR_ 0 0 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.33935546875 2 570.341438 1138.66832 NaN NaN NaN NaN NaN NaN NaN 105.74 1 105.69 105.19 106.19 -0.048737 0 0 0 0.85798 1 58623 58623 0.52476 0.066424 1 35161 9810 23429 23873 41339 41339 0.10453552334206506 LPKNKNRNR 9 Unmodified _LPKNKNRNR_ 0 0 0 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 ENSG00000196396|ENST00000371621|PTPN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.341438 1138.66832 3.7942 0.002164 -2.4582 -0.001402 1.336 0.00076196 570.3400387951122 98.374 0.28709 98.346 98.17 98.458 -0.028282 0 0 NaN 7.9102 30 10 4 NaN NaN NaN NaN 0 NaN NaN 0 1187800 35162 9810 23429 23873 0.10453552334206506 LPKNNPPTI 9 Unmodified _LPKNNPPTI_ 0 0 0 ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1 ENST00000404284.6_1_22:35717823-35727385:+|nuORF ENST00000404284.6_1_22:35717823-35727385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2901611328125 2 497.290017 992.565481 0.13936 6.9304E-05 0.41298 0.00020537 0.55234 0.00027467 497.2902609813386 31.145 0.30452 31.145 31.013 31.318 0 25 14 2 0 0 0 0.07087 1 16195 16195 39.95 0 1 1526500 35163 12913 23430 23874 41340 41340 0.06890046822900331 LPKNNPPTI 9 Unmodified _LPKNNPPTI_ 0 0 0 ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1 ENST00000404284.6_1_22:35717823-35727385:+|nuORF ENST00000404284.6_1_22:35717823-35727385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2893981933594 2 497.290017 992.565481 0.28778 0.00014311 0.20313 0.00010101 0.4909 0.00024412 497.2899369100722 31.128 0.24907 31.025 30.939 31.188 -0.10269 15 9 2 0 0 0 0.20428 1 16177 16177 22.736 0 1 1168200 35164 12913 23430 23874 41341 41341 0.06890046822900331 LPKNNPPTI 9 Unmodified _LPKNNPPTI_ 0 0 0 ENST00000404284.6_1_22:35717823-35727385:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1 ENST00000404284.6_1_22:35717823-35727385:+|nuORF ENST00000404284.6_1_22:35717823-35727385:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2911071777344 2 497.290017 992.565481 0.8779 0.00043657 -0.76022 -0.00037805 0.11768 5.852E-05 497.2896129901495 35.173 0.41715 31.078 30.869 31.286 -4.0951 35 24 2 0 0 0 0.0082353 1 20386 20386 96.111 0 1 16342000 35165 12913 23430 23874 41342 41342 0.06890046822900331 LPKNPSVVF 9 Unmodified _LPKNPSVVF_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7948303222656 2 500.794935 999.575317 0.57125 0.00028608 -0.18674 -9.3516E-05 0.38452 0.00019257 500.79472455597545 50.792 0.25386 50.738 50.608 50.862 -0.053871 19 12 2 0 0 0 0.023481 1 27479 27479 60.074 29.437 1 3059000 35166 1160 23431 23875 41343 41343 0.07551234828281395 LPKPCFLEDFY 11 Unmodified _LPKPCFLEDFY_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MSMS AL20221201_MKP_PDAC_01 4 685.9551391601562 2 686.336307 1370.65806 NaN NaN NaN NaN NaN NaN NaN 103.44 1 97.269 96.769 97.769 -6.1757 0 0 0 0.94165 1 69355 69355 1.3295 0 1 35167 8142 23432 23876 41344 41344 -0.012442362258752837 LPKPLVGYL 9 Unmodified _LPKPLVGYL_ 0 0 0 ENST00000367081.7_1_6:159185637-159185862:+|nuORF ENST00000367081.7_1_6:159185637-159185862:+|nuORF ENST00000367081.7_1_6:159185637-159185862:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.3157043457031 2 500.315503 998.616454 0.043987 2.2007E-05 0.10158 5.082E-05 0.14556 7.2828E-05 500.31546327203307 58.299 0.53454 57.809 57.658 58.193 -0.49079 39 25 2 0 0 0 0.16226 1 31849 31849 26.884 0 1 1578600 35168 12221 23433 23877 41345 41345 0.11708995867752492 LPKPLVGYL 9 Unmodified _LPKPLVGYL_ 0 0 0 ENST00000367081.7_1_6:159185637-159185862:+|nuORF ENST00000367081.7_1_6:159185637-159185862:+|nuORF ENST00000367081.7_1_6:159185637-159185862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3142700195312 2 500.315503 998.616454 1.4723 0.0007366 0.71587 0.00035816 2.1881 0.0010948 500.31589745300516 64.041 1.3647 57.865 57.405 58.77 -6.1757 133 74 2 0 0 0 0.047196 1 41181 41181 46.021 3.9264 1 89386000 35169 12221 23433 23877 41346 41346 0.11708995867752492 LPKPPDSMF 9 Oxidation (M) _LPKPPDSM(Oxidation (M))F_ LPKPPDSM(1)F LPKPPDSM(42)F 0 0 1 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2635498046875 2 524.26261 1046.51067 0.89874 0.00047118 0.75271 0.00039462 1.6514 0.00086579 524.2631657075592 48.018 0.63414 42.784 42.371 43.005 -5.2339 49 38 2 0 0 0 0.062454 1 29766 29766 41.956 15.687 1 12942000 35170 3065 23434 23878 41347 41347 531 -0.010727080400329214 LPKPPGRGV 9 Unmodified _LPKPPGRGV_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7876586914062 2 460.787444 919.560336 0.53454 0.00024631 -0.031893 -1.4696E-05 0.50265 0.00023161 460.78746842499265 27.013 0.70574 23.976 23.533 24.239 -3.0365 66 36 2 0 0 0 0.042911 3 14961 14730;14843;14961 48.346 19.859 1 23458000 35171 9045 23435 23879 41348;41349;41350 41350 0.09733787750951706 LPKQPPLAL 9 Unmodified _LPKQPPLAL_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.8128356933594 2 488.813128 975.611703 0.33365 0.00016309 0.049663 2.4276E-05 0.38331 0.00018737 488.8130889859367 54.957 0.35973 54.479 54.291 54.65 -0.47798 42 17 3 0 0 0 0.0088975 2 29750 29750;29864 104.8 43.442 1 5789300 35172 411 23436 23880 41351;41352 41351 0.1229211172496889 LPKQPPLAL 9 Unmodified _LPKQPPLAL_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.8133850097656 2 488.813128 975.611703 0.47076 0.00023011 -0.11952 -5.8421E-05 0.35124 0.00017169 488.81290814894595 54.583 0.32412 54.516 54.359 54.683 -0.066936 35 15 3 0 0 0 0.0067112 2 29624 29624;29727 112.59 34.444 1 8379600 35173 411 23436 23880 41353;41354 41353 0.1229211172496889 LPKQPPLAL 9 Unmodified _LPKQPPLAL_ 0 0 0 ENSG00000010017|ENST00000011619|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.8141479492188 2 488.813128 975.611703 0.93216 0.00045565 0.52556 0.0002569 1.4577 0.00071255 488.8133995138678 60.23 0.48764 54.115 53.87 54.357 -6.1147 52 25 3 0 0 0 0.0082281 2 38744 38744;38885 104.8 43.442 1 48793000 35174 411 23436 23880 41355;41356 41355 0.1229211172496889 LPKREHLQY 9 Unmodified _LPKREHLQY_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2247924804688 3 395.224257 1182.65094 -0.48759 -0.00019271 0.74325 0.00029375 0.25567 0.00010105 395.22458876171424 19.298 0.12234 19.321 19.273 19.395 0.023106 17 8 3 0 0 0 0.56345 1 9731 9731 2.086 0.63089 1 774140 35175 6187 23437 23881 41357 41357 0.06692212008556453 LPKREHLQY 9 Unmodified _LPKREHLQY_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2249145507812 3 395.224257 1182.65094 1.2233 0.00048348 -0.72507 -0.00028656 0.49823 0.00019691 395.22431124783765 21.862 0.32071 19.128 18.935 19.256 -2.7348 46 17 3 0 0 0 0.19127 1 11709 11709 22.658 9.7855 1 8097700 35176 6187 23437 23881 41358 41358 0.06692212008556453 LPKRLNREL 9 Unmodified _LPKRLNREL_ 0 0 0 REV__SPATA31A3|p.A948Gfs*28|1|0.22|ENSG00000275969|chr9:66987657-66987658|-/T|frameshift_variant REV__SPATA31A3|p.A948Gfs*28|1|0.22|ENSG00000275969|chr9:66987657-66987658|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.5200500488281 3 380.240018 1137.69823 1.6116 0.0006128 -0.34209 -0.00013008 1.2695 0.00048273 380.2400472407841 21.663 0.545 18.928 18.775 19.32 -2.7348 76 31 4 0 0 0 0.21021 1 11570 11570 4.5289 2.0304 1 12553000 + 35177 24655 23438 23882 41359 41359 0.1348849127957692 LPKRMNWL 8 Unmodified _LPKRMNWL_ 0 0 0 ENST00000431520.5_1_2:213881686-213886719:-|nuORF ENST00000431520.5_1_2:213881686-213886719:-|nuORF ENST00000431520.5_1_2:213881686-213886719:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.7711791992188 2 529.302404 1056.59026 1.0619 0.00056204 -1.8019 -0.00095375 -0.74003 -0.0003917 529.3014342989726 61.743 0.28971 55.567 55.384 55.674 -6.1757 26 14 2 0 0 0 8.7369 1 39705 39705 2.5775 1.7838 1 30337000 35178 13259 23439 23883 41360 41360 0.06422403424630829 LPKRNLVYYL 10 Unmodified _LPKRNLVYYL_ 0 0 0 ENST00000374279.3_1_9:114697220-114697295:+|nuORF ENST00000374279.3_1_9:114697220-114697295:+|nuORF ENST00000374279.3_1_9:114697220-114697295:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2788696289062 3 426.923807 1277.74959 0.40259 0.00017188 -0.30954 -0.00013215 0.093049 3.9725E-05 426.9235672283014 59.26 0.4073 59.207 58.992 59.399 -0.053062 59 20 4 0 0 0 0.23767 1 32394 32394 6.1918 2.0023 1 33097000 35179 12443 23440 23884 41361 41361 0.12182815253595436 LPKSATICY 9 Carbamidomethyl (C) _LPKSATIC(Carbamidomethyl (C))Y_ LPKSATIC(1)Y LPKSATIC(42)Y 0 1 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000487459.5_1_7:116660544-116830896:+|nuORF;ENST00000489293.5_1_7:116770554-116838385:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7759399414062 2 526.775885 1051.53722 0.7373 0.00038839 -0.11394 -6.0021E-05 0.62336 0.00032837 526.7755574023013 42.238 0.41209 37.553 37.335 37.747 -4.6846 58 26 3 0 0 0 0.062454 1 25592 25592 41.956 16.556 1 60810000 35180 289 23441 23885 41362 41362 11 0.013509808512708332 LPKSPPYTAF 10 Unmodified _LPKSPPYTAF_ 0 0 0 nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110864088-110864580:-|nuORF nc|ENSG00000063046|P23588-2|EIF4B nc|ENSG00000063046|P23588-2|EIF4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8062133789062 2 560.8055 1119.59645 0.3065 0.00017189 -2.1934 -0.0012301 -1.8869 -0.0010582 560.8054838795655 51.326 0.87557 51.272 50.901 51.777 -0.053875 128 43 4 0 0 0 0.048223 3 27733 27633;27733;27840 67.081 40.813 1 16848000 35181 855 23442 23886 41363;41364;41365 41364 0.04143200137127678 LPKSPPYTAF 10 Unmodified _LPKSPPYTAF_ 0 0 0 nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110864088-110864580:-|nuORF nc|ENSG00000063046|P23588-2|EIF4B nc|ENSG00000063046|P23588-2|EIF4B MSMS AL20221201_MKP_PDAC_01 4 560.8060913085938 2 560.8055 1119.59645 NaN NaN NaN NaN NaN NaN NaN 57.175 1 51.148 50.648 51.648 -6.0275 0 0 0 0.13297 1 36554 36554 55.235 13.14 1 35182 855 23442 23886 41366 41366 0.04143200137127678 LPKTCDISF 9 Carbamidomethyl (C) _LPKTC(Carbamidomethyl (C))DISF_ LPKTC(1)DISF LPKTC(44)DISF 0 1 0 ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.77392578125 2 540.773342 1079.53213 -0.49037 -0.00026518 1.4017 0.00075799 0.91131 0.00049281 540.7740953236507 48.699 0.27352 48.699 48.555 48.828 0 33 12 3 0 0 0 0.05483 1 26718 26718 43.772 12.504 1 15737000 35183 4248 23443 23887 41367 41367 424 -0.004453230113085738 LPKTCDISF 9 Carbamidomethyl (C) _LPKTC(Carbamidomethyl (C))DISF_ LPKTC(1)DISF LPKTC(64)DISF 0 1 0 ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7738647460938 2 540.773342 1079.53213 0.18295 9.8936E-05 0.3335 0.00018035 0.51645 0.00027928 540.7736598034581 48.991 0.37168 48.619 48.427 48.799 -0.37171 53 18 4 0 0 0 0.01958 2 26268 26268;26385 63.961 13.454 1 104280000 35184 4248 23443 23887 41368;41369 41368 424 -0.004453230113085738 LPKTCDISF 9 Carbamidomethyl (C) _LPKTC(Carbamidomethyl (C))DISF_ LPKTC(1)DISF LPKTC(73)DISF 0 1 0 ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7749633789062 2 540.773342 1079.53213 0.29163 0.00015771 0.86686 0.00046877 1.1585 0.00062648 540.7738637673663 48.674 0.21891 48.631 48.495 48.714 -0.04369 27 10 3 0 0 0 0.012668 1 26240 26240 72.968 12.578 1 5867500 35185 4248 23443 23887 41370 41370 424 -0.004453230113085738 LPKTCDISF 9 Carbamidomethyl (C) _LPKTC(Carbamidomethyl (C))DISF_ LPKTC(1)DISF LPKTC(77)DISF 0 1 0 ENSG00000130725|ENST00000253023|UBE2M;ENST00000593801.1_1_19:59068052-59068513:-|nuORF ENSG00000130725|ENST00000253023|UBE2M ENSG00000130725|ENST00000253023|UBE2M MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7724609375 2 540.773342 1079.53213 0.59249 0.0003204 0.015202 8.2206E-06 0.60769 0.00032862 540.7732318035943 54.592 0.82257 48.727 48.19 49.012 -5.8653 138 49 4 0 0 0 0.011291 2 34530 34530;34673 76.825 22.992 1 680260000 35186 4248 23443 23887 41371;41372 41371 424 -0.004453230113085738 LPKTGTVSL 9 Unmodified _LPKTGTVSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2789001464844 2 458.279118 914.543683 0.496 0.00022731 -0.14528 -6.658E-05 0.35072 0.00016073 458.27894973330615 39.895 0.25295 39.895 39.74 39.993 0 26 12 3 0 0 0 0.025842 1 21376 21376 57.722 6.0922 1 5142300 35187 7904 23444 23888 41373 41373 0.08299242074338053 LPKTGTVSL 9 Unmodified _LPKTGTVSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2792053222656 2 458.279118 914.543683 0.17492 8.0163E-05 -0.30181 -0.00013831 -0.12689 -5.8152E-05 458.27883920985687 40.137 0.31427 39.84 39.649 39.963 -0.29716 26 14 2 0 0 0 0.014417 1 21170 21170 69.105 12.928 1 6295600 35188 7904 23444 23888 41374 41374 0.08299242074338053 LPKTGTVSL 9 Unmodified _LPKTGTVSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2791442871094 2 458.279118 914.543683 0.44695 0.00020483 0.16876 7.7337E-05 0.61571 0.00028217 458.27911739839277 45.148 0.46838 40.296 40.098 40.567 -4.852 73 31 3 0 0 0 0.014417 1 27735 27735 69.105 19.172 1 50431000 35189 7904 23444 23888 41375 41375 0.08299242074338053 LPKTTALEL 9 Unmodified _LPKTTALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.299560546875 2 493.30005 984.585547 -0.22668 -0.00011182 0.2579 0.00012722 0.031217 1.5399E-05 493.30005031656776 52.014 0.26597 52.014 51.886 52.152 0 25 11 3 0 0 0 0.01958 1 28746 28746 63.961 6.2385 1 5897500 35190 6628;16309;16310 23445 23889 41376 41376 0.09263797762832837 LPKTTALEL 9 Unmodified _LPKTTALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.3008728027344 2 493.30005 984.585547 0.72653 0.0003584 2.2325 0.0011013 2.9591 0.0014597 493.30114346451774 52.407 0.27435 51.973 51.809 52.083 -0.43367 33 13 3 0 0 0 0.015688 1 28282 28282 67.838 7.7643 1 9650200 35191 6628;16309;16310 23445 23889 41377 41377 0.09263797762832837 LPKTTALEL 9 Unmodified _LPKTTALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3003540039062 2 493.30005 984.585547 0.3004 0.00014819 1.0546 0.00052026 1.355 0.00066844 493.300536792673 57.92 0.38084 51.893 51.698 52.078 -6.0275 38 21 2 0 0 0 0.011291 1 37114 37114 76.825 20.648 1 48931000 35192 6628;16309;16310 23445 23889 41378 41378 0.09263797762832837 LPKVGLIAF 9 Unmodified _LPKVGLIAF_ 0 0 0 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.3095703125 2 479.310221 956.605889 0.43741 0.00020966 0.086937 4.167E-05 0.52435 0.00025133 479.3100333920864 78.882 0.29956 78.937 78.78 79.079 0.05497 22 11 3 0 0 0 0.03568 1 43574 43574 52.268 19.963 1 2695900 35193 5775 23446 23890 41379 41379 0.12585013213322327 LPKVGLIAF 9 Unmodified _LPKVGLIAF_ 0 0 0 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 ENSG00000146409|ENST00000275227|SLC18B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.3106689453125 2 479.310221 956.605889 1.4212 0.00068118 -0.38897 -0.00018644 1.0322 0.00049475 479.30986471185145 97.231 0.22646 91.055 90.929 91.155 -6.1757 21 12 2 0 0 0 0.03568 1 64411 64411 52.268 19.963 1 16025000 35194 5775 23446 23890 41380 41380 0.12585013213322327 LPKVKVEY 8 Unmodified _LPKVKVEY_ 0 0 0 REV__ENSG00000047597|ENST00000378616|XK REV__ENSG00000047597|ENST00000378616|XK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2981872558594 2 488.29731 974.580068 0.48267 0.00023569 0.4527 0.00022105 0.93538 0.00045674 488.2974173129196 53.074 0.25436 53.01 52.882 53.137 -0.063419 29 12 3 0 0 0 0.40035 1 28752 28752 44.407 0 1 5291400 + 35195 17229 23447 23891 41381 41381 0.0917611897103825 LPKVVAKYR 9 Unmodified _LPKVVAKYR_ 0 0 0 REV__ENSG00000102239|ENST00000370648|BRS3 REV__ENSG00000102239|ENST00000370648|BRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3443603515625 2 537.345126 1072.6757 1.4721 0.00079102 -1.0993 -0.00059069 0.37282 0.00020033 537.3446169536599 106.06 0.70796 99.881 99.59 100.3 -6.1757 159 99 2 0 0 0 0.61381 1 71199 71199 0.52476 0.52476 1 7603200 + 35196 18231 23448 23892 41382 41382 0.14226891881912707 LPLAADALTF 10 Unmodified _LPLAADALTF_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2923583984375 2 516.292225 1030.5699 0.38676 0.00019968 0.66159 0.00034157 1.0484 0.00054126 516.2923866124462 88.836 0.63882 88.332 88.068 88.707 -0.50423 82 27 4 0 0 0 0.2178 1 48688 48688 32.305 10.559 1 3174500 35197 9250 23449 23893 41383 41383 0.055835112457771174 LPLAADALTF 10 Unmodified _LPLAADALTF_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MSMS AL20221201_MKP_PDAC_01 4 516.2930908203125 2 516.292225 1030.5699 NaN NaN NaN NaN NaN NaN NaN 99.039 1 92.864 92.364 93.364 -6.1757 0 0 0 0.21264 1 65842 65842 42.095 15.211 1 35198 9250 23449 23893 41384 41384 0.055835112457771174 LPLAAPPSAE 10 Unmodified _LPLAAPPSAE_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7483520507812 2 483.26875 964.522947 0.78958 0.00038158 -2.3118 -0.0011172 -1.5222 -0.00073565 483.2674513295797 46.031 0.26429 46.031 45.9 46.164 0 22 12 3 0 0 0 0.21952 1 25176 25176 10.824 0 1 4424900 35199 2709 23450 23894 41385 41385 0.039266516946554475 LPLAAVLC 8 Carbamidomethyl (C) _LPLAAVLC(Carbamidomethyl (C))_ LPLAAVLC(1) LPLAAVLC(52) 0 1 0 ENST00000361470.3_1_X:75648184-75648415:+|nuORF ENST00000361470.3_1_X:75648184-75648415:+|nuORF ENST00000361470.3_1_X:75648184-75648415:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 856.4949951171875 1 856.496087 855.48881 3.7837 0.0032408 -4.1673 -0.0035693 -0.38355 -0.00032851 856.4919182178484 99.517 0.15033 99.48 99.379 99.529 -0.036301 9 5 2 0 0 0 0.32738 1 55276 55276 52.334 6.5843 1 1721400 35200 12186 23451 23895 41386 41386 972 0.05528532002051634 LPLAAVVY 8 Unmodified _LPLAAVVY_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 845.5120239257812 1 845.513117 844.50584 0.20462 0.00017301 0.50256 0.00042492 0.70718 0.00059793 845.5136435692915 74.433 0.33771 73.957 73.817 74.155 -0.47588 22 14 2 0 0 0 0.42709 1 40706 40706 41.817 17.607 1 1079100 35201 9272 23452 23896 41387 41387 0.07736775879504876 LPLAAVVY 8 Unmodified _LPLAAVVY_ 0 0 0 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 ENSG00000184574|ENST00000329858|LPAR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 845.5140380859375 1 845.513117 844.50584 0.88932 0.00075193 0.15897 0.00013441 1.0483 0.00088634 845.5127562482388 81.744 0.45364 75.568 75.308 75.761 -6.1757 29 25 2 0 0 0 0.32738 2 53546 53546;53676 52.334 10.517 1 7103600 35202 9272 23452 23896 41388;41389 41388 0.07736775879504876 LPLAFLTAM 9 Unmodified _LPLAFLTAM_ 0 0 0 nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24 nc|ENSG00000149547|O14681-3|EI24 nc|ENSG00000149547|O14681-3|EI24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.5376586914062 1 976.553602 975.546325 0.62167 0.00060709 0.51057 0.0004986 1.1322 0.0011057 976.5538194567118 101.46 0.09874 95.285 95.231 95.33 -6.1757 6 4 2 0 0 0 0.016494 2 68059 68059;68086 67.035 28.884 1 8246000 35203 6018 23453 23897 41390;41391 41390 0.05757374207621524 LPLAFVATL 9 Unmodified _LPLAFVATL_ 0 0 0 nc|ENSG00000149809|O76062-2|TM7SF2;ENST00000529601.5_1_11:64879444-64883522:+|nuORF;ENSG00000149809|ENST00000279263|TM7SF2;ENST00000530650.5_1_11:64879967-64883522:+|nuORF;ENST00000534667.1_1_11:64880702-64881078:+|nuORF;ENST00000531029.5_1_11:64880120-64882285:+|nuORF;ENST00000527851.5_1_11:64880615-64881038:+|nuORF;ENST00000533766.5_1_11:64880615-64882334:+|nuORF nc|ENSG00000149809|O76062-2|TM7SF2 nc|ENSG00000149809|O76062-2|TM7SF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 944.5828247070312 1 944.581531 943.574254 0.64524 0.00060948 0.59606 0.00056303 1.2413 0.0011725 944.5821788210977 101.11 0.10476 94.931 94.869 94.974 -6.1757 8 5 2 0 0 0 0.012158 1 67761 67761 74.396 17.855 1 22877000 35204 6039 23454 23898 41392 41392 0.10021020459362262 LPLAHHIQLI 10 Unmodified _LPLAHHIQLI_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.85693359375 2 577.855858 1153.69716 0.39859 0.00023033 0.65595 0.00037904 1.0545 0.00060937 577.8563200143917 77.009 0.39806 77.059 76.848 77.246 0.05011 49 16 4 0 0 0 0.55245 2 42447 42447;42547 15.847 2.8047 1 12354000 35205 5656 23455 23899 41393;41394 41393 0.12646276910641063 LPLAHVLEL 9 Unmodified _LPLAHVLEL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.810546875 2 502.810585 1003.60662 -0.8468 -0.00042578 1.2376 0.00062226 0.39076 0.00019648 502.8111872522822 78.295 0.70643 77.809 77.532 78.238 -0.48596 77 32 4 0 0 0 0.0086179 2 42811 42811;42907 89.427 35.851 1 13919000 35206 977;3739 23456 23900 41395;41396 41395 0.10495807862366746 LPLAHVLEL 9 Unmodified _LPLAHVLEL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4;ENSG00000123983|ENST00000357430|ACSL3 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8111572265625 2 502.810585 1003.60662 0.21664 0.00010893 -0.7706 -0.00038746 -0.55395 -0.00027853 502.8103658366088 77.753 0.47592 77.805 77.488 77.964 0.052452 44 19 3 0 0 0 0.010877 2 42821 42821;42928 77.984 33.577 1 14774000 35207 977;3739 23456 23900 41397;41398 41397 0.10495807862366746 LPLALGLAL 9 Unmodified _LPLALGLAL_ 0 0 0 ENSG00000175315|ENST00000312134|CST6 ENSG00000175315|ENST00000312134|CST6 ENSG00000175315|ENST00000312134|CST6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 880.587646484375 1 880.586616 879.57934 0.65304 0.00057506 0.48343 0.0004257 1.1365 0.0010008 880.587018813111 101.42 0.11382 95.242 95.178 95.291 -6.1757 13 5 3 0 0 0 0.01018 1 68047 68047 79.935 0 1 60096000 35208 8508 23457 23901 41399 41399 0.13473324321967084 LPLALRLPRR 10 Unmodified _LPLALRLPRR_ 0 0 0 ENST00000378292.7_1_9:35690423-35690990:-|nuORF ENST00000378292.7_1_9:35690423-35690990:-|nuORF ENST00000378292.7_1_9:35690423-35690990:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 602.9039916992188 2 602.903674 1203.7928 NaN NaN NaN NaN NaN NaN NaN 103.79 1 97.616 97.116 98.116 -6.1757 0 0 0 1.0024 1 69560 69560 0.40072 0 1 35209 12542 23458 23902 41400 41400 0.19905049821500143 LPLAPERPTL 10 Unmodified _LPLAPERPTL_ 0 0 0 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 REV__nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8323974609375 2 553.832049 1105.64954 0.46964 0.0002601 0.80081 0.00044351 1.2704 0.00070361 553.8324930111849 76.862 2.7535 70.686 68.416 71.17 -6.1757 250 150 3 0 0 0 0.13391 1 49535 49535 41.84 0 1 66182000 + 35210 19049 23459 23903 41401 41401 0.10094577919812764 LPLAPPEPEY 10 Unmodified _LPLAPPEPEY_ 0 0 0 ENSG00000164465|ENST00000338728|DCBLD1 ENSG00000164465|ENST00000338728|DCBLD1 ENSG00000164465|ENST00000338728|DCBLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2954711914062 2 563.294965 1124.57538 0.32484 0.00018298 -1.0032 -0.00056508 -0.67833 -0.0003821 563.294259793058 63.238 0.4926 63.238 62.963 63.456 0 49 22 3 0 0 0 0.52888 1 35160 35160 14.838 4.0143 1 2857200 35211 7199 23460 23904 41402 41402 0.018071900376071426 LPLAPSRPTF 10 Unmodified _LPLAPSRPTF_ 0 0 0 ENST00000567938.1_1_16:67313533-67313945:+|nuORF;ENST00000562744.1_2_16:67313148-67313945:+|nuORF;ENST00000379344.7_1_16:67313489-67313945:+|nuORF;ENST00000568621.1_2_16:67313571-67313945:+|nuORF ENST00000567938.1_1_16:67313533-67313945:+|nuORF ENST00000567938.1_1_16:67313533-67313945:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1962280273438 3 366.88172 1097.62333 -0.26367 -9.6737E-05 -0.44115 -0.00016185 -0.70482 -0.00025859 366.8820160953098 31.995 0.18358 32.025 31.925 32.109 0.030104 15 7 3 0 0 0 0.23922 1 16754 16754 3.8763 0.88109 1 988330 35212 12564 23461 23905 41403 41403 0.07842308748308824 LPLARKVLK 9 Unmodified _LPLARKVLK_ 0 0 0 ENST00000237841.5_1_12:3948629-3949796:+|nuORF ENST00000237841.5_1_12:3948629-3949796:+|nuORF ENST00000237841.5_1_12:3948629-3949796:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 519.3667602539062 2 519.363319 1036.71209 NaN NaN NaN NaN NaN NaN NaN 105.56 1 99.379 98.879 99.879 -6.1757 0 0 0 0.85737 1 70721 70721 0.6015 0.6015 1 35213 11092 23462 23906 41404 41404 0.1951976877865036 LPLARVKAL 9 Unmodified _LPLARVKAL_ 0 0 0 ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4 ENST00000485527.5_1_2:75185926-75187326:+|nuORF ENST00000485527.5_1_2:75185926-75187326:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.835205078125 2 490.834394 979.654236 0.53288 0.00026156 -0.065962 -3.2376E-05 0.46692 0.00022918 490.8342556298049 42.342 0.17336 42.333 42.227 42.4 -0.0088196 13 7 2 0 0 0 0.047196 1 22695 22695 46.021 11.919 1 4671600 35214 3113 23463 23907 41405 41405 0.1635950685321177 LPLASQEAL 9 Unmodified _LPLASQEAL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2697143554688 2 471.26875 940.522947 0.043354 2.0431E-05 0.23611 0.00011127 0.27947 0.0001317 471.26876163670056 55.169 0.38266 55.169 54.944 55.327 0 40 16 3 0 0 0 0.0094915 2 30562 30562;30666 81.864 24.393 1 14044000 35215 3388 23464 23908 41406;41407 41406 0.05030651694653443 LPLASQEAL 9 Unmodified _LPLASQEAL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.5301513671875 1 941.530224 940.522947 -0.37993 -0.00035772 0.49077 0.00046208 0.11084 0.00010436 941.5306222882738 55.166 0.35837 55.166 54.968 55.327 0 32 15 3 0 0 0 0.0082661 2 30678 30570;30678 92.491 27.256 1 3549800 35216 3388 23464 23908 41408;41409 41409 0.05030651694653443 LPLASQEAL 9 Unmodified _LPLASQEAL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2696228027344 2 471.26875 940.522947 0.82011 0.00038649 0.11325 5.3371E-05 0.93336 0.00043986 471.26859744027854 63.452 0.46711 57.276 57.019 57.487 -6.1757 58 26 3 0 0 0 0.0090851 2 40908 40908;41054 85.357 23.999 1 44292000 35217 3388 23464 23908 41410;41411 41410 0.05030651694653443 LPLASVGEY 9 Unmodified _LPLASVGEY_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.5055541992188 1 948.503674 947.496398 -0.074182 -7.0362E-05 -0.28295 -0.00026838 -0.35713 -0.00033874 948.5038140675446 59.973 0.31727 59.973 59.819 60.137 0 24 14 2 0 0 0 0.0082281 1 33417 33417 92.822 50.728 1 2697200 35218 4485 23465 23909 41412 41412 0.020549628033336376 LPLASVGEY 9 Unmodified _LPLASVGEY_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7552490234375 2 474.755475 947.496398 NaN NaN NaN NaN NaN NaN NaN 59.923 1 59.923 59.423 60.423 0 0 0 0 0.086291 1 33408 33408 46.921 25.174 1 35219 4485 23465 23909 41413 41413 0.020549628033336376 LPLATTGDG 9 Unmodified _LPLATTGDG_ 0 0 0 nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B;nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;nc|ENSG00000169918|Q8TE49|OTUD7A nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7235717773438 2 422.724175 843.433798 NaN NaN NaN NaN NaN NaN NaN 61.719 1 61.231 60.731 61.731 -0.48764 0 0 0 0.23581 1 33618 33618 28.487 0 1 35220 10857;7928 23466 23910 41414 41414 0.005818167351435477 LPLCDWFC 8 Unmodified _LPLCDWFC_ 0 0 0 ENST00000413074.1_1_1:222763309-222763360:+|nuORF ENST00000413074.1_1_1:222763309-222763360:+|nuORF ENST00000413074.1_1_1:222763309-222763360:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7187805175781 2 498.719524 995.424495 -0.040933 -2.0414E-05 0.19071 9.511E-05 0.14978 7.4696E-05 498.71942339878814 31.709 0.3195 31.709 31.561 31.88 0 22 15 2 0 0 0 0.78849 1 16497 16497 9.3474 0 1 2031000 35221 12992 23467 23911 41415 41415 -0.07339991146398006 LPLCYDPPMLS 11 Unmodified _LPLCYDPPMLS_ 0 0 0 REV__ENST00000412341.6_1_1:249150017-249153213:-|nuORF REV__ENST00000412341.6_1_1:249150017-249153213:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2071533203125 3 416.871616 1247.59302 0.31355 0.00013071 0.057241 2.3862E-05 0.37079 0.00015457 416.87168036838443 59.732 0.26384 59.241 59.069 59.333 -0.49079 31 12 3 0 0 0 0.56638 1 32464 32464 7.0371 0 1 5670100 35222 26722 23468 23912 41416 41416 -0.02087554023410121 LPLDDQVAL 9 Unmodified _LPLDDQVAL_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 983.5426025390625 1 983.540788 982.533512 0.23323 0.0002294 -0.60519 -0.00059523 -0.37195 -0.00036583 983.5401894816812 67.664 0.32452 67.664 67.505 67.829 0 23 15 2 0 0 0 0.044011 1 37769 37769 47.749 14.963 1 2529500 35223 7240;1908 23469 23913 41417 41417 0.041546343490949766 LPLDDQVAL 9 Unmodified _LPLDDQVAL_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2741088867188 2 492.274032 982.533512 0.3349 0.00016486 -0.09113 -4.4861E-05 0.24377 0.00012 492.27398192639833 67.658 0.49734 67.658 67.437 67.934 0 53 23 3 0 0 0 0.016184 1 37772 37772 67.344 21.644 1 6986600 35224 7240;1908 23469 23913 41418 41418 0.041546343490949766 LPLDDQVAL 9 Unmodified _LPLDDQVAL_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2756652832031 2 492.274032 982.533512 0.77842 0.00038319 0.7794 0.00038368 1.5578 0.00076687 492.2742403429251 75.811 0.39485 69.636 69.499 69.894 -6.1757 36 20 2 0 0 0 0.070838 1 49609 49609 39.957 5.8549 1 9499100 35225 7240;1908 23469 23913 41419 41419 0.041546343490949766 LPLDEFSQL 9 Unmodified _LPLDEFSQL_ 0 0 0 REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A REV__nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7785034179688 2 531.279315 1060.54408 0.044641 2.3717E-05 -2.7465 -0.0014592 -2.7019 -0.0014354 531.7784211085602 69.17 0.43353 68.69 68.465 68.899 -0.48071 40 18 3 0 0 0 0.37804 1 37809 37809 13.508 0 1 1356600 + 35226 19848 23470 23914 41420 41420 0.01622617003522464 LPLDGETVKY 10 Unmodified _LPLDGETVKY_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8060302734375 2 567.805697 1133.59684 0.41868 0.00023773 1.3648 0.00077497 1.7835 0.0010127 567.8065238486131 47.236 0.40424 47.236 46.98 47.384 0 51 18 4 0 0 0 0.078742 1 25883 25883 51.415 26.016 1 6596700 35227 7991 23471 23915 41421 41421 0.035385750663408544 LPLDGITEL 9 Unmodified _LPLDGITEL_ 0 0 0 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 ENSG00000126215|ENST00000555055|XRCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.54736328125 1 970.545539 969.538263 0.15502 0.00015046 1.8041 0.0017509 1.9591 0.0019014 970.5477553817765 80.835 0.29302 80.835 80.731 81.024 0 21 13 2 0 0 0 0.23158 2 44941 44843;44941 20.454 4.2069 1 615540 35228 3930 23472 23916 41422;41423 41423 0.05227518491835781 LPLDIQIF 8 Unmodified _LPLDIQIF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7835388183594 2 479.784036 957.553519 NaN NaN NaN NaN NaN NaN NaN 96.121 1 96.121 95.621 96.621 0 0 0 0 0.97444 1 53120 53120 2.5775 0 1 35229 16120 23473 23917 41424 41424 0.0730443007971644 LPLDIQIF 8 Unmodified _LPLDIQIF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7838439941406 2 479.784036 957.553519 0.48538 0.00023288 -0.056239 -2.6983E-05 0.42914 0.00020589 479.7839805462856 96.519 0.388 96.214 96.009 96.397 -0.30472 56 24 3 0 0 0 0.71616 1 52738 52738 15.768 3.2367 1 1050600 35230 16120 23473 23917 41425 41425 0.0730443007971644 LPLDIQIFY 9 Unmodified _LPLDIQIFY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.31591796875 2 561.3157 1120.61685 1.3778 0.00077338 -1.1073 -0.00062154 0.2705 0.00015183 561.3149904668576 101.17 0.17495 94.996 94.889 95.064 -6.1757 30 10 4 0 0 0 0.10734 1 67860 67860 32.305 17.467 1 381290000 35231 16120 23474 23918 41426 41426 0.06136370796957635 LPLDISSGAF 10 Unmodified _LPLDISSGAF_ 0 0 0 REV__ENST00000477618.1_1_9:74817496-74842957:+|nuORF REV__ENST00000477618.1_1_9:74817496-74842957:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2746887207031 2 510.274032 1018.53351 0.47471 0.00024223 -0.53731 -0.00027418 -0.062604 -3.1945E-05 510.2739777640522 43.713 0.46362 38.948 38.724 39.188 -4.7648 41 28 2 0 0 0 0.092434 1 26497 26497 48.346 2.3249 1 14740000 + 35232 19181 23475 23919 41427 41427 0.024986343491036678 LPLDKKEHF 9 Unmodified _LPLDKKEHF_ 0 0 0 REV__ENSG00000087266|ENST00000503393|SH3BP2 REV__ENSG00000087266|ENST00000503393|SH3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2127685546875 3 376.213358 1125.61824 -0.026004 -9.783E-06 0.91831 0.00034548 0.8923 0.0003357 376.2136671543296 55.448 1.0575 55.379 54.744 55.801 -0.068741 109 53 5 0 0 0 0.54213 1 30164 30164 4.897 2.6142 1 21207000 + 35233 17783 23476 23920 41428 41428 0.060460048857066795 LPLDLRELF 9 Unmodified _LPLDLRELF_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3267211914062 2 558.326599 1114.63865 0.57628 0.00032175 0.34833 0.00019448 0.92461 0.00051624 558.3267350270434 96.008 0.30103 95.703 95.52 95.821 -0.30473 21 15 2 0 0 0 0.40476 1 52398 52398 12.241 0.60036 1 485120 35234 4056 23477 23921 41429 41429 0.08591175545507213 LPLDLRELF 9 Unmodified _LPLDLRELF_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.328125 2 558.326599 1114.63865 2.4835 0.0013866 -0.40898 -0.00022835 2.0745 0.0011582 558.3263735081182 95.531 0.46844 95.535 95.322 95.79 0.004158 56 17 4 0 0 0 0.047714 2 53010 53010;53115 45.74 17.819 1 14634000 35235 4056 23477 23921 41430;41431 41430 0.08591175545507213 LPLDLRELF 9 Unmodified _LPLDLRELF_ 0 0 0 ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT ENSG00000128274|ENST00000642412|A4GALT MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3279418945312 2 558.326599 1114.63865 1.4811 0.00082693 -1.4495 -0.00080927 0.031644 1.7668E-05 558.327798354535 100.14 0.2653 93.96 93.838 94.103 -6.1757 53 16 5 0 0 0 0.13231 1 66932 66932 29.841 1.6674 1 156620000 35236 4056 23477 23921 41432 41432 0.08591175545507213 LPLDNPSVL 9 Unmodified _LPLDNPSVL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5;ENST00000476954.1_1_1:156220380-156221068:-|nuORF ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2764282226562 2 484.276575 966.538597 0.47056 0.00022788 0.22439 0.00010867 0.69495 0.00033655 484.27657964379137 66.996 0.47809 66.996 66.77 67.248 0 46 21 3 0 0 0 0.095405 2 37307 37307;37409 34.102 13.649 1 3495600 35237 10210 23478 23922 41433;41434 41433 0.05398938211715176 LPLDNPSVL 9 Unmodified _LPLDNPSVL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5;ENST00000476954.1_1_1:156220380-156221068:-|nuORF ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 967.5482177734375 1 967.545874 966.538597 0.35886 0.00034722 0.78506 0.00075958 1.1439 0.0011068 967.5466990515913 66.975 0.26975 66.975 66.839 67.108 0 15 12 2 0 0 0 0.07087 1 37358 37358 39.95 7.6442 1 563240 35238 10210 23478 23922 41435 41435 0.05398938211715176 LPLDNPSVL 9 Unmodified _LPLDNPSVL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5;ENST00000476954.1_1_1:156220380-156221068:-|nuORF ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.27685546875 2 484.276575 966.538597 0.61612 0.00029837 -0.03101 -1.5017E-05 0.58511 0.00028335 484.27651154052035 67.508 0.43024 67.026 66.802 67.232 -0.48219 37 18 3 0 0 0 0.095405 1 36834 36834 34.102 7.2188 1 2354800 35239 10210 23478 23922 41436 41436 0.05398938211715176 LPLDNPSVL 9 Unmodified _LPLDNPSVL_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5;ENST00000476954.1_1_1:156220380-156221068:-|nuORF ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MSMS AL20221201_MKP_PDAC_01 4 484.2774963378906 2 484.276575 966.538597 NaN NaN NaN NaN NaN NaN NaN 74.769 1 68.593 68.093 69.093 -6.1757 0 0 0 0.047623 1 48882 48882 58.679 12.658 1 35240 10210 23478 23922 41437 41437 0.05398938211715176 LPLDPSLSL 9 Unmodified _LPLDPSLSL_ 0 0 0 nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17;nc|ENSG00000159588|Q96LX7-2|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.5498046875 1 954.550625 953.543348 0.10407 9.9337E-05 0.67275 0.00064217 0.77681 0.00074151 954.5514196750994 74.25 0.37143 74.25 73.994 74.365 0 28 17 2 0 0 0 0.39863 1 41241 41241 12.532 0 1 702430 35241 6662 23479 23923 41438 41438 0.06471822354478718 LPLDSFIDVY 10 Unmodified _LPLDSFIDVY_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.30908203125 2 591.308072 1180.60159 0.38086 0.00022521 0.20862 0.00012336 0.58948 0.00034856 591.3080863555489 97.004 0.29935 96.699 96.545 96.845 -0.30472 40 17 3 0 0 0 0.56675 2 53014 52916;53014 20.454 11.071 1 1325100 35242 5184 23480 23924 41439;41440 41440 0.018514592090923543 LPLDSFIDVY 10 Unmodified _LPLDSFIDVY_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3086547851562 2 591.308072 1180.60159 0.95221 0.00056305 0.16072 9.5034E-05 1.1129 0.00065808 591.30809108487 100.46 0.14352 94.28 94.202 94.345 -6.1757 18 8 3 0 0 0 0.06987 1 67157 67157 74.423 28.402 1 68010000 35243 5184 23480 23924 41441 41441 0.018514592090923543 LPLDSFIDVY 10 Unmodified _LPLDSFIDVY_ 0 0 0 ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B ENSG00000139722|ENST00000267202|VPS37B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 591.308072 1180.60159 2.2852 0.0013513 -0.94504 -0.00055881 1.3401 0.00079244 591.3076066419691 96.624 0.27238 96.617 96.475 96.747 -0.0070114 -0.020717 -0.0010185 NaN 20.454 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1380000 35244 5184 23480 23924 0.018514592090923543 LPLDSHGVDF 10 Unmodified _LPLDSHGVDF_ 0 0 0 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 ENSG00000117597|ENST00000491415|UTP25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2737426757812 2 550.274564 1098.53457 0.53028 0.0002918 0.77769 0.00042794 1.308 0.00071974 550.7769711636215 57.29 0.2988 56.8 56.645 56.943 -0.48974 33 13 3 0 0 0 0.11755 1 31130 31130 43.858 14.777 1 2774800 35245 3322 23481 23925 41442 41442 -0.010751512820206699 LPLDSSPVL 9 Unmodified _LPLDSSPVL_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.53564453125 1 940.534975 939.527698 0.11992 0.00011278 0.90352 0.00084979 1.0234 0.00096258 940.5357437136795 68.261 0.49998 68.261 68.043 68.543 0 57 23 3 0 0 0 0.0077963 3 38064 37968;38064;38157 109.63 31.645 1 3275000 35246 5811 23482 23926 41443;41444;41445 41444 0.05551535837423671 LPLDSSPVL 9 Unmodified _LPLDSSPVL_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.5322875976562 1 940.534975 939.527698 0.25749 0.00024218 -0.91071 -0.00085656 -0.65322 -0.00061438 940.5339344938592 68.808 0.7824 68.327 67.683 68.465 -0.48071 42 35 2 0 0 0 0.0077963 2 37570 37570;37670 109.63 42.285 1 2027000 35247 5811 23482 23926 41446;41447 41446 0.05551535837423671 LPLDSSPVL 9 Unmodified _LPLDSSPVL_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 940.5364379882812 1 940.534975 939.527698 0.22536 0.00021196 -1.0488 -0.00098642 -0.82343 -0.00077446 940.5347190913681 76.382 0.63431 70.206 69.836 70.47 -6.1757 43 34 2 0 0 0 0.0048787 3 49997 49767;49884;49997 117.6 42.285 1 15717000 35248 5811 23482 23926 41448;41449;41450 41450 0.05551535837423671 LPLDSSPVL 9 Unmodified _LPLDSSPVL_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 940.534975 939.527698 0.62784 0.00059051 -4.8729 -0.0045832 -4.2451 -0.0039926 940.5323847830042 74.451 0.073471 68.275 68.233 68.306 -6.1757 -0.01253 -0.004887 NaN 109.63 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 4230400 35249 5811 23482 23926 0.05551535837423671 LPLDTVTFY 9 Unmodified _LPLDTVTFY_ 0 0 0 ENSG00000089248|ENST00000261735|ERP29;nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF;ENST00000552052.1_2_12:112451308-112457507:+|nuORF;ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENSG00000089248|ENST00000261735|ERP29;ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENSG00000089248|ENST00000261735|ERP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7840576171875 2 534.784233 1067.55391 0.73059 0.00039071 1.7762 0.00094986 2.5067 0.0013406 534.7848999342339 90.299 0.61436 84.123 83.774 84.389 -6.1757 64 35 2 0 0 0 0.013472 1 59675 59675 70.716 22.37 1 28352000 35250 1525;13414 23483 23927 41451 41451 0.02283805008892159 LPLDVFNNYF 10 Unmodified _LPLDVFNNYF_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000528173.5_1_11:46391373-46400221:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.3140258789062 2 621.313689 1240.61282 1.4644 0.00090988 -0.81651 -0.00050731 0.64794 0.00040257 621.3132109923455 91.885 0.35921 91.915 91.745 92.104 0.03019 38 12 4 0 0 0 0.5905 1 51175 51175 11.64 2.0963 1 11203000 35251 5982;14851 23484 23928 41452 41452 0.002142813032378399 LPLDVQNPL 9 Unmodified _LPLDVQNPL_ 0 0 0 ENST00000568505.6_1_16:57220242-57238444:+|nuORF;ENST00000537866.5_1_16:57220958-57238444:+|nuORF;ENST00000562439.5_1_16:57220056-57238444:+|nuORF;ENST00000394420.8_1_16:57220203-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7900695800781 2 504.78985 1007.56515 0.34384 0.00017357 -0.72928 -0.00036813 -0.38543 -0.00019456 504.7893660875922 71.983 0.29713 71.983 71.84 72.137 0 22 13 2 0 0 0 0.25681 1 40117 40117 19.257 1.1106 1 658640 35252 15452 23485 23929 41453 41453 0.06166627103038991 LPLDVQNPL 9 Unmodified _LPLDVQNPL_ 0 0 0 ENST00000568505.6_1_16:57220242-57238444:+|nuORF;ENST00000537866.5_1_16:57220958-57238444:+|nuORF;ENST00000562439.5_1_16:57220056-57238444:+|nuORF;ENST00000394420.8_1_16:57220203-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.5641174316406 2 504.78985 1007.56515 0.17123 8.6437E-05 -1.0191 -0.00051445 -0.84791 -0.00042801 504.7895951597021 72.453 0.43684 71.977 71.73 72.167 -0.47609 48 20 4 0 0 0 0.16418 1 39597 39597 19.257 5.3509 1 2759500 35253 15452 23485 23929 41454 41454 0.06166627103038991 LPLDVQNPL 9 Unmodified _LPLDVQNPL_ 0 0 0 ENST00000568505.6_1_16:57220242-57238444:+|nuORF;ENST00000537866.5_1_16:57220958-57238444:+|nuORF;ENST00000562439.5_1_16:57220056-57238444:+|nuORF;ENST00000394420.8_1_16:57220203-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2913818359375 2 504.78985 1007.56515 0.73567 0.00037136 -1.6731 -0.00084459 -0.93747 -0.00047323 504.7893900761834 80.513 0.62278 74.338 73.893 74.516 -6.1757 53 35 2 0 0 0 0.042911 2 52822 52676;52822 48.346 16.04 1 19928000 35254 15452 23485 23929 41455;41456 41456 0.06166627103038991 LPLDVRIRY 9 Unmodified _LPLDVRIRY_ 0 0 0 REV__ENSG00000175097|ENST00000311485|RAG2 REV__ENSG00000175097|ENST00000311485|RAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8480834960938 2 572.84549 1143.67643 0.31498 0.00018043 1.2439 0.00071255 1.5588 0.00089298 572.846258446719 54.977 0.25483 54.909 54.783 55.038 -0.068737 14 12 2 0 0 0 0.27545 1 29886 29886 25.399 0 1 3034100 + 35255 22841 23486 23930 41457 41457 0.11033686530981868 LPLDVRIRY 9 Unmodified _LPLDVRIRY_ 0 0 0 REV__ENSG00000175097|ENST00000311485|RAG2 REV__ENSG00000175097|ENST00000311485|RAG2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.828125 2 572.84549 1143.67643 0.31498 0.00018043 1.2439 0.00071255 1.5588 0.00089298 572.846258446719 54.977 0.25483 54.909 54.783 55.038 -0.068737 14 12 2 0 0 0 0.15363 1 29806 29806 25.399 0 1 3034100 + 35256 22841 23486 23930 41458 41458 0.11033686530981868 LPLEDVVSV 9 Unmodified _LPLEDVVSV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7767333984375 2 485.776408 969.538263 0.54495 0.00026472 0.17898 8.6944E-05 0.72393 0.00035167 485.77657248354825 74.156 0.41975 74.156 73.945 74.365 0 33 19 2 0 0 0 0.087258 2 41227 41227;41321 36.044 12.896 1 2265200 35257 1673 23487 23931 41459;41460 41459 0.05227518491858518 LPLEDVVSV 9 Unmodified _LPLEDVVSV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.546142578125 1 970.545539 969.538263 0.44162 0.00042862 -0.20705 -0.00020095 0.23458 0.00022767 970.5454549339483 74.192 0.22567 74.192 74.045 74.271 0 17 11 2 0 0 0 0.2143 1 41257 41257 21.747 4.8044 1 393140 35258 1673 23487 23931 41461 41461 0.05227518491858518 LPLEDVVSV 9 Unmodified _LPLEDVVSV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7773132324219 2 485.776408 969.538263 0.84647 0.0004112 -0.47707 -0.00023175 0.3694 0.00017944 485.7763319332856 74.606 0.2598 74.13 74.042 74.302 -0.47588 16 10 2 0 0 0 0.41742 1 40852 40852 11.64 3.7301 1 461960 35259 1673 23487 23931 41462 41462 0.05227518491858518 LPLEDVVSV 9 Unmodified _LPLEDVVSV_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7769775390625 2 485.776408 969.538263 0.67276 0.00032681 0.43001 0.00020889 1.1028 0.0005357 485.7765226785265 82.712 0.34203 76.537 76.405 76.747 -6.1757 25 19 2 0 0 0 0.016184 1 54359 54359 67.344 16.489 1 13516000 35260 1673 23487 23931 41463 41463 0.05227518491858518 LPLEEAYRF 9 Unmodified _LPLEEAYRF_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4;ENST00000569223.1_1_15:42235208-42264692:-|nuORF ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3007202148438 2 569.300581 1136.58661 0.67568 0.00038467 -0.048563 -2.7647E-05 0.62712 0.00035702 569.300510700944 62.008 0.39892 61.52 61.305 61.704 -0.48764 66 18 5 0 0 0 0.036857 2 33801 33701;33801 51.63 26.443 1 154220000 35261 2167 23488 23932 41464;41465 41465 0.02378012131748619 LPLEEAYRF 9 Unmodified _LPLEEAYRF_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4;ENST00000569223.1_1_15:42235208-42264692:-|nuORF ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3009033203125 2 569.300581 1136.58661 0.36313 0.00020673 -0.68053 -0.00038742 -0.3174 -0.00018069 569.3000000378138 61.621 0.31662 61.588 61.415 61.731 -0.032787 32 15 3 0 0 0 0.023481 1 33608 33608 60.074 28.806 1 9642000 35262 2167 23488 23932 41466 41466 0.02378012131748619 LPLEEAYRF 9 Unmodified _LPLEEAYRF_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4;ENST00000569223.1_1_15:42235208-42264692:-|nuORF ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3021240234375 2 569.300581 1136.58661 1.0791 0.00061434 -0.24631 -0.00014022 0.8328 0.00047412 569.300820352148 69.002 1.1544 62.826 62.223 63.377 -6.1757 140 64 3 0 0 0 0.044011 1 44970 44970 47.749 22.349 1 82700000 35263 2167 23488 23932 41467 41467 0.02378012131748619 LPLEEGQAVL 10 Unmodified _LPLEEGQAVL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.8006591796875 2 534.800414 1067.58628 0.18661 9.9798E-05 0.75991 0.0004064 0.94652 0.0005062 534.8008456532397 65.234 0.46983 65.234 65.033 65.503 0 53 18 4 0 0 0 0.02987 2 36448 36344;36448 68.081 39.594 1 6301700 35264 3552 23489 23933 41468;41469 41469 0.05518592411908685 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.8771362304688 3 401.876746 1202.60841 0.12389 4.979E-05 0.40172 0.00016144 0.52561 0.00021123 401.87688169707576 46.75 0.37683 46.75 46.481 46.858 0 62 17 5 0 0 0 0.032796 2 25503 25503;25613 49.527 29.901 1 129850000 35265 551;2694 23490 23934 41470;41471 41470 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.3124389648438 2 602.31148 1202.60841 0.022014 1.3259E-05 1.3004 0.00078323 1.3224 0.00079649 602.3117597737627 46.737 0.25372 46.737 46.585 46.839 0 33 11 4 0 0 0 0.0086722 1 25529 25529 88.954 42.933 1 10445000 35266 551;2694 23490 23934 41472 41472 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8772888183594 3 401.876746 1202.60841 0.67993 0.00027325 -0.47525 -0.00019099 0.20468 8.2256E-05 401.87651674938144 46.997 0.47271 46.66 46.462 46.935 -0.33664 95 23 6 0 0 0 0.032796 2 25110 25110;25219 42.312 31.414 1 545890000 35267 551;2694 23490 23934 41473;41474 41473 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.31103515625 2 602.31148 1202.60841 0.65946 0.0003972 0.1006 6.0594E-05 0.76007 0.0004578 602.3114701414881 47.008 0.49265 46.671 46.503 46.996 -0.33664 55 24 4 0 0 0 0.0085164 2 25141 25141;25242 99.799 57.959 1 35686000 35268 551;2694 23490 23934 41475;41476 41475 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8771667480469 3 401.876746 1202.60841 1.1509 0.00046252 0.22295 8.96E-05 1.3739 0.00055212 401.8766808153425 46.729 0.56603 46.695 46.41 46.976 -0.033417 78 27 5 0 0 0 0.047788 1 25136 25136 42.312 15.089 1 51795000 35269 551;2694 23490 23934 41477 41477 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3123779296875 2 602.31148 1202.60841 1.2261 0.00073847 0.83588 0.00050346 2.062 0.0012419 602.311904841899 46.752 0.19822 46.719 46.596 46.794 -0.033421 21 9 3 0 0 0 0.014417 1 25155 25155 69.105 31.131 1 3192500 35270 551;2694 23490 23934 41478 41478 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8767395019531 3 401.876746 1202.60841 0.5572 0.00022392 0.39091 0.0001571 0.94811 0.00038102 401.87686304477256 52.038 0.53147 46.303 46.066 46.598 -5.7345 111 35 4 0 0 0 0.020973 3 32682 32682;32826;32962 49.527 29.901 1 1023199999.9999999 35271 551;2694 23490 23934 41479;41480;41481 41479 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3111572265625 2 602.31148 1202.60841 -0.1667 -0.0001004 0.53173 0.00032027 0.36504 0.00021987 602.3117551332058 52.023 0.40807 46.288 46.107 46.515 -5.7345 72 27 3 0 0 0 0.0024112 2 32695 32695;32837 129.77 73.595 1 225320000 35272 551;2694 23490 23934 41482;41483 41482 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8772277832031 3 401.876746 1202.60841 1.067 0.00042881 0.21925 8.8113E-05 1.2863 0.00051693 401.8767556268554 52.667 0.068073 46.932 46.892 46.96 -5.7345 5 3 2 0 0 0 0.013041 1 33264 33264 57.249 33.448 1 131720000 35273 551;2694 23490 23934 41484 41484 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2109069824219 3 401.876746 1202.60841 1.3395 0.0005383 0.051426 2.0667E-05 1.3909 0.00055897 401.8765825212105 53.825 0.55035 48.02 47.831 48.381 -5.8042 41 32 2 0 0 0 0.032796 2 34023 34023;34164 42.312 31.414 1 8552000 35274 551;2694 23490 23934 41485;41486 41485 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8769226074219 3 401.876746 1202.60841 1.1425 0.00045916 0.0015539 6.2449E-07 1.1441 0.00045978 401.87666035429254 55.045 1.023 49.124 48.743 49.766 -5.9211 82 63 2 0 0 0 0.018301 4 35240 34817;34954;35093;35240 51.415 27.355 1 33797000 35275 551;2694 23490 23934 41487;41488;41489;41490 41490 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8765258789062 3 401.876746 1202.60841 0.73152 0.00029398 0.51527 0.00020707 1.2468 0.00050106 401.8769196419452 57.847 1.2144 51.819 51.552 52.766 -6.0275 123 67 2 0 0 0 0.020973 5 37341 36913;37047;37214;37341;37487 49.527 29.901 1 60940000 35276 551;2694 23490 23934 41491;41492;41493;41494;41495 41494 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 602.3115844726562 2 602.31148 1202.60841 NaN NaN NaN NaN NaN NaN NaN 52.702 1 46.967 46.467 47.467 -5.7345 0 0 0 0.27852 1 33270 33270 26.268 2.2476 1 35277 551;2694 23490 23934 41496 41496 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 401.87744140625 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 53.213 1 47.409 46.909 47.909 -5.8042 0 0 0 0.059498 1 33607 33607 42.312 28.094 1 35278 551;2694 23490 23934 41497 41497 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 401.8770446777344 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 53.501 1 47.697 47.197 48.197 -5.8042 0 0 0 0.047623 1 33824 33824 45.74 29.174 1 35279 551;2694 23490 23934 41498 41498 0.015208168803155786 LPLEEHYRF 9 Unmodified _LPLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 401.8770446777344 3 401.876746 1202.60841 NaN NaN NaN NaN NaN NaN NaN 55.765 1 49.844 49.344 50.344 -5.9211 0 0 0 0.12343 1 35525 35525 30.703 11.559 1 35280 551;2694 23490 23934 41499 41499 0.015208168803155786 LPLEEVVQEY 10 Unmodified _LPLEEVVQEY_ 0 0 0 nc|ENSG00000183718|Q96A61-2|TRIM52;ENST00000514805.1_1_5:180686895-180687847:-|nuORF;ENSG00000183718|ENST00000688015|TRIM52;nc|ENSG00000183718|Q96A61|TRIM52;ENST00000510796.1_1_5:180683812-180687220:-|nuORF;ENST00000503005.1_1_5:180684052-180687322:-|nuORF;ENST00000513146.1_1_5:180681739-180687184:-|nuORF nc|ENSG00000183718|Q96A61-2|TRIM52 nc|ENSG00000183718|Q96A61-2|TRIM52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8162841796875 2 609.816261 1217.61797 0.23978 0.00014622 -1.0521 -0.00064157 -0.81229 -0.00049535 609.8156229640668 72.684 0.45015 72.684 72.433 72.883 0 37 20 2 0 0 0 0.65023 1 40416 40416 13.906 4.5229 1 1218600 35281 9181 23491 23935 41500 41500 0.017865403752011844 LPLEGAKVF 9 Unmodified _LPLEGAKVF_ 0 0 0 nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB nc|ENSG00000114423|Q13191-3|CBLB nc|ENSG00000114423|Q13191-3|CBLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2894287109375 2 487.289485 972.564418 0.41003 0.0001998 -0.080811 -3.9378E-05 0.32921 0.00016042 487.28881098203857 58.194 0.22152 57.704 57.619 57.84 -0.48974 16 10 2 0 0 0 0.07087 1 31663 31663 39.95 3.8227 1 1293600 35282 3038 23492 23936 41501 41501 0.07703832454001258 LPLEGAQAF 9 Unmodified _LPLEGAQAF_ 0 0 0 ENSG00000183828|ENST00000392568|NUDT14 ENSG00000183828|ENST00000392568|NUDT14 ENSG00000183828|ENST00000392568|NUDT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.25537109375 2 473.255643 944.496732 0.19618 9.2844E-05 -0.64463 -0.00030507 -0.44845 -0.00021223 473.25624654649425 62.233 0.23273 62.233 62.072 62.304 0 14 12 2 0 0 0 0.12424 1 34680 34680 30.637 8.8899 1 1695000 35283 9201 23493 23937 41502 41502 0.022263825231902956 LPLEGFYF 8 Unmodified _LPLEGFYF_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1;REV__nc|ENSG00000111199|Q9HBA0-2|TRPV4;REV__ENSG00000187688|ENST00000338560|TRPV2 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2544250488281 2 493.255111 984.49567 0.15721 7.7542E-05 -3.8101 -0.0018794 -3.6529 -0.0018018 493.2530862920924 100.1 0.2072 100.1 99.964 100.17 0 14 7 3 0 0 0 0.71616 1 55258 55258 15.768 3.2367 1 979740 + 35284 29003;18736;23650 23494 23938 41503 41503 0.0028016815429054986 LPLEGFYF 8 Unmodified _LPLEGFYF_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1;REV__nc|ENSG00000111199|Q9HBA0-2|TRPV4;REV__ENSG00000187688|ENST00000338560|TRPV2 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.255111 984.49567 0.15721 7.7542E-05 -3.8101 -0.0018794 -3.6529 -0.0018018 493.2530862920924 100.1 0.2072 100.1 99.964 100.17 0 0.0021069 0.00067764 NaN 15.768 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 979740 + 35285 29003;18736;23650 23494 23938 0.0028016815429054986 LPLEISGSLL 10 Unmodified _LPLEISGSLL_ 0 0 0 REV__ENST00000392750.6_2_3:167402023-167402092:-|nuORF REV__ENST00000392750.6_2_3:167402023-167402092:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.3132934570312 2 521.313158 1040.61176 0.11499 5.9947E-05 -0.35387 -0.00018448 -0.23888 -0.00012453 521.3128719607486 59.965 0.27304 59.474 59.313 59.586 -0.49079 33 13 3 0 0 0 0.1028 1 32611 32611 46.021 13.715 1 9721400 + 35286 26399 23495 23939 41504 41504 0.09308066934318049 LPLEKVYSL 9 Unmodified _LPLEKVYSL_ 0 0 0 nc|ENSG00000099910|Q53GT1-3|KLHL22;ENSG00000099910|ENST00000328879|KLHL22;ENST00000487090.1_1_22:20812284-20819767:-|nuORF nc|ENSG00000099910|Q53GT1-3|KLHL22 nc|ENSG00000099910|Q53GT1-3|KLHL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3173828125 2 531.3157 1060.61685 0.016358 8.6911E-06 4.0873 0.0021716 4.1037 0.0021803 531.3191116477565 61.613 0.3191 61.125 60.965 61.284 -0.48764 39 14 4 0 0 0 0.029718 1 33517 33517 55.503 5.5697 1 14969000 35287 1719 23496 23940 41505 41505 0.0889637079694694 LPLELLPLL 9 Unmodified _LPLELLPLL_ 0 0 0 REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1 REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1 MSMS AL20221201_MKP_PDAC_01 4 510.8392028808594 2 510.838811 1019.66307 NaN NaN NaN NaN NaN NaN NaN 102.08 1 95.899 95.399 96.399 -6.1757 0 0 0 0.20498 1 68513 68513 30.225 0 1 + 35288 29531 23497 23941 41506 41506 0.154024356990476 LPLENASIL 9 Unmodified _LPLENASIL_ 0 0 0 ENST00000483428.1_1_9:125014204-125023774:-|nuORF;ENSG00000119446|ENST00000417201|RBM18 ENST00000483428.1_1_9:125014204-125023774:-|nuORF ENST00000483428.1_1_9:125014204-125023774:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2841491699219 2 485.2844 968.554247 0.62448 0.00030305 -1.0187 -0.00049438 -0.39426 -0.00019133 485.2837380573711 73.224 0.34991 73.224 72.985 73.335 0 35 15 3 0 0 0 0.19127 1 40702 40702 24.021 2.2739 1 3030700 35289 3437 23498 23942 41507 41507 0.06871224728752168 LPLENASIL 9 Unmodified _LPLENASIL_ 0 0 0 ENST00000483428.1_1_9:125014204-125023774:-|nuORF;ENSG00000119446|ENST00000417201|RBM18 ENST00000483428.1_1_9:125014204-125023774:-|nuORF ENST00000483428.1_1_9:125014204-125023774:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.5623779296875 1 969.561524 968.554247 0.52127 0.0005054 -1.9285 -0.0018698 -1.4073 -0.0013644 969.5597682558083 73.169 0.25849 73.169 73.076 73.335 0 20 11 2 0 0 0 0.047196 1 40716 40716 46.021 17.534 1 1495900 35290 3437 23498 23942 41508 41508 0.06871224728752168 LPLENASIL 9 Unmodified _LPLENASIL_ 0 0 0 ENST00000483428.1_1_9:125014204-125023774:-|nuORF;ENSG00000119446|ENST00000417201|RBM18 ENST00000483428.1_1_9:125014204-125023774:-|nuORF ENST00000483428.1_1_9:125014204-125023774:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2837219238281 2 485.2844 968.554247 0.8173 0.00039662 -1.2433 -0.00060337 -0.42604 -0.00020675 485.28361517585523 73.662 0.37128 73.186 72.952 73.323 -0.47588 29 15 3 0 0 0 0.12424 1 40263 40263 30.637 2.1497 1 2435500 35291 3437 23498 23942 41509 41509 0.06871224728752168 LPLENASIL 9 Unmodified _LPLENASIL_ 0 0 0 ENST00000483428.1_1_9:125014204-125023774:-|nuORF;ENSG00000119446|ENST00000417201|RBM18 ENST00000483428.1_1_9:125014204-125023774:-|nuORF ENST00000483428.1_1_9:125014204-125023774:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.28564453125 2 485.2844 968.554247 1.1503 0.00055821 0.18432 8.945E-05 1.3346 0.00064766 485.28456779856873 81.603 0.40991 75.427 75.247 75.657 -6.1757 40 22 2 0 0 0 0.024882 1 53582 53582 58.679 10.333 1 20582000 35292 3437 23498 23942 41510 41510 0.06871224728752168 LPLENASIL 9 Unmodified _LPLENASIL_ 0 0 0 ENST00000483428.1_1_9:125014204-125023774:-|nuORF;ENSG00000119446|ENST00000417201|RBM18 ENST00000483428.1_1_9:125014204-125023774:-|nuORF ENST00000483428.1_1_9:125014204-125023774:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 969.561524 968.554247 0.59858 0.00058036 -1.8852 -0.0018279 -1.2866 -0.0012475 969.5592626160536 73.673 0.28079 73.197 73.018 73.299 -0.47588 0.014164 2.3914E-05 NaN 46.021 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1958500 35293 3437 23498 23942 0.06871224728752168 LPLENPVVL 9 Unmodified _LPLENPVVL_ 0 0 0 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3031311035156 2 497.302593 992.590633 0.25869 0.00012865 0.81344 0.00040452 1.0721 0.00053317 497.3029115699088 79.353 0.36546 79.353 79.181 79.546 0 23 14 2 0 0 0 0.25681 1 44057 44057 19.257 4.0085 1 813980 35294 10909 23499 23943 41511 41511 0.09404101625477779 LPLENPVVL 9 Unmodified _LPLENPVVL_ 0 0 0 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.3029174804688 2 497.302593 992.590633 0.95987 0.00047735 -0.51299 -0.00025511 0.44689 0.00022224 497.3024625966862 79.8 0.43713 79.311 79.096 79.533 -0.48933 44 18 3 0 0 0 0.10734 2 43677 43677;43786 32.305 13.049 1 2647300 35295 10909 23499 23943 41512;41513 41512 0.09404101625477779 LPLENPVVL 9 Unmodified _LPLENPVVL_ 0 0 0 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.3046569824219 2 497.302593 992.590633 1.0828 0.00053846 1.2216 0.00060751 2.3044 0.001146 497.3031299386286 87.534 0.31351 81.358 81.163 81.476 -6.1757 25 16 2 0 0 0 0.031062 1 57709 57709 54.774 22.468 1 12498000 35296 10909 23499 23943 41514 41514 0.09404101625477779 LPLENPVVL 9 Unmodified _LPLENPVVL_ 0 0 0 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 ENSG00000275718|ENST00000617897|CCL15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.302593 992.590633 0.6423 0.00031942 0.48127 0.00023934 1.1236 0.00055876 497.302816724987 82.054 0.35629 81.559 81.342 81.698 -0.4952 0.071117 -0.00018629 NaN 54.774 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1329900 35297 10909 23499 23943 0.09404101625477779 LPLEQTVYI 9 Unmodified _LPLEQTVYI_ 0 0 0 REV__ENSG00000196263|ENST00000308031|ZNF471 REV__ENSG00000196263|ENST00000308031|ZNF471 MSMS AL20221201_MKP_PDAC_01 4 538.3074951171875 2 538.305332 1074.59611 NaN NaN NaN NaN NaN NaN NaN 94.146 1 87.97 87.47 88.47 -6.1757 0 0 0 0.32177 1 62354 62354 24.021 2.2739 1 + 35298 23809 23500 23944 41515 41515 0.06179780417301117 LPLERDAESF 10 Unmodified _LPLERDAESF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.798828125 2 588.798403 1175.58225 0.62761 0.00036954 -0.050967 -3.0009E-05 0.57665 0.00033953 588.7982650875215 47.674 0.358 47.674 47.494 47.852 0 54 16 4 0 0 0 0.021614 2 26054 26054;26163 74.2 30.427 1 80272000 35299 1936 23501 23945 41516;41517 41516 0.0014850291818220285 LPLERDAESF 10 Unmodified _LPLERDAESF_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3004760742188 2 588.798403 1175.58225 1.1504 0.00067735 -0.084285 -4.9627E-05 1.0661 0.00062772 588.7983055226161 54.231 0.48403 48.366 48.139 48.623 -5.8653 58 28 4 0 0 0 0.015688 3 34305 34240;34305;34444 79.596 27.966 1 100490000 35300 1936 23501 23945 41518;41519;41520 41519 0.0014850291818220285 LPLERTITY 9 Unmodified _LPLERTITY_ 0 0 0 nc|ENSG00000221955|A0AV02-2|SLC12A8 nc|ENSG00000221955|A0AV02-2|SLC12A8 nc|ENSG00000221955|A0AV02-2|SLC12A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3173217773438 2 553.316232 1104.61791 1.0091 0.00055837 -0.76984 -0.00042596 0.2393 0.00013241 553.3156800964927 50.354 0.18249 49.962 49.83 50.013 -0.3923 10 8 2 0 0 0 0.085786 1 27097 27097 38.615 3.6827 1 2178800 35301 16550 23502 23946 41521 41521 0.06978585165848017 LPLESALSF 9 Unmodified _LPLESALSF_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7705688476562 2 488.771126 975.527698 0.64987 0.00031764 -1.4345 -0.00070112 -0.78459 -0.00038348 488.7703960774572 85.265 0.31944 84.764 84.604 84.923 -0.5015 41 21 3 0 0 0 0.038285 2 46618 46618;46716 50.855 20.63 1 5420500 35302 8699 23503 23947 41522;41523 41522 0.03895535837432362 LPLESALSF 9 Unmodified _LPLESALSF_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7712097167969 2 488.771126 975.527698 1.1804 0.00057692 -0.43212 -0.00021121 0.74823 0.00036572 488.7711691385309 94.156 0.82393 87.98 87.585 88.409 -6.1757 88 47 2 0 0 0 0.013472 4 62219 62219;62347;62473;62628 70.716 30.165 1 17464000 35303 8699 23503 23947 41524;41525;41526;41527 41524 0.03895535837432362 LPLEVAERVEQ 11 Unmodified _LPLEVAERVEQ_ 0 0 0 REV__nc|ENSG00000013275|P43686-2|PSMC4 REV__nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8560791015625 2 641.853709 1281.69287 0.66761 0.00042851 2.2389 0.0014371 2.9066 0.0018656 641.855652628417 56.839 0.23752 56.771 56.619 56.857 -0.068737 21 11 3 0 0 0 0.5551 1 30931 30931 13.615 0.5724 1 2483900 + 35304 17070 23504 23948 41528 41528 0.06328722906437179 LPLFEALDL 9 Unmodified _LPLFEALDL_ 0 0 0 ENST00000457986.5_2_3:194182934-194206542:-|nuORF ENST00000457986.5_2_3:194182934-194206542:-|nuORF ENST00000457986.5_2_3:194182934-194206542:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7937622070312 2 515.794601 1029.57465 0.3383 0.00017449 0.47438 0.00024468 0.81268 0.00041918 515.7944852190035 93.333 0.31898 92.876 92.75 93.069 -0.4574 32 13 3 0 0 0 0.39863 1 50988 50988 12.532 0.89125 1 480400 35305 13621 23505 23949 41529 41529 0.06104395388570083 LPLFFHRCC 9 Unmodified _LPLFFHRCC_ 0 0 0 ENST00000495415.5_1_10:99220751-99221398:-|nuORF ENST00000495415.5_1_10:99220751-99221398:-|nuORF ENST00000495415.5_1_10:99220751-99221398:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2802124023438 2 568.280615 1134.54668 0.89186 0.00050682 -0.54732 -0.00031103 0.34454 0.0001958 568.2801324919068 74.933 0.25845 74.456 74.301 74.559 -0.47714 16 10 2 0 0 0 0.46577 1 41001 41001 9.3474 1.4373 1 982470 35306 14353 23506 23950 41530 41530 -0.015215293441542599 LPLFPEPLHVF 11 Unmodified _LPLFPEPLHVF_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8720092773438 2 654.871174 1307.72779 0.99249 0.00064995 0.22643 0.00014828 1.2189 0.00079823 654.8714174208366 100.44 0.12801 94.261 94.202 94.33 -6.1757 18 7 3 0 0 0 1.3506E-20 1 67165 67165 144.35 114.51 1 51321000 35307 4267 23507 23951 41531 41531 0.08624010505013757 LPLFTVTAT 9 Unmodified _LPLFTVTAT_ 0 0 0 REV__ENST00000504707.1_1_4:120981275-120987923:-|nuORF REV__ENST00000504707.1_1_4:120981275-120987923:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7823791503906 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 56.212 1 56.143 55.643 56.643 -0.068737 0 0 0 0.6032 1 30567 30567 12.532 0 1 + 35308 21869 23508 23952 41532 41532 0.06612126217100922 LPLGAWRL 8 Unmodified _LPLGAWRL_ 0 0 0 nc|ENSG00000024862|Q8IWP9|CCDC28A nc|ENSG00000024862|Q8IWP9|CCDC28A nc|ENSG00000024862|Q8IWP9|CCDC28A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2851867675781 2 463.284537 924.554522 1.37 0.00063469 -0.008526 -3.95E-06 1.3615 0.00063074 463.28474845019144 46.788 0.24203 46.755 46.656 46.898 -0.033417 24 11 3 0 0 0 0.67481 1 25197 25197 19.439 0 1 2808300 35309 16023 23509 23953 41533 41533 0.08922689239261672 LPLGDGLTLAF 11 Unmodified _LPLGDGLTLAF_ 0 0 0 ENST00000470947.5_1_10:76993833-76995157:-|nuORF;ENSG00000165644|ENST00000372538|COMTD1 ENST00000470947.5_1_10:76993833-76995157:-|nuORF ENST00000470947.5_1_10:76993833-76995157:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2761840820312 2 558.818607 1115.62266 3.6332 0.0020303 -0.80099 -0.00044761 2.8322 0.0015827 558.8181860955364 99.628 0.10986 99.592 99.503 99.613 -0.036301 8 3 3 0 0 0 0.30139 1 55327 55327 5.7319 2.1354 1 1490200 35310 7366 23510 23954 41534 41534 0.06947469308624932 LPLGFTFSF 9 Unmodified _LPLGFTFSF_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;nc|ENSG00000106633|P35557-3|GCK;ENSG00000106633|ENST00000403799|GCK;nc|ENSG00000106633|P35557-2|GCK;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENSG00000159399|ENST00000290573|HK2;ENSG00000160883|ENST00000292432|HK3 ENSG00000156510|ENST00000354624|HKDC1;ENSG00000160883|ENST00000292432|HK3 ENSG00000156510|ENST00000354624|HKDC1 MSMS AL20221201_MKP_PDAC_01 4 514.7876586914062 2 514.776211 1027.53787 NaN NaN NaN NaN NaN NaN NaN 101.66 1 95.486 94.986 95.986 -6.1757 0 0 0 0.052454 1 68230 68230 56.541 20.497 1 35311 6463;6765 23511 23955 41535 41535 0.02520143562674093 LPLGIGGHY 9 Unmodified _LPLGIGGHY_ 0 0 0 ENST00000530683.5_1_11:407853-409994:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR;ENST00000528698.5_1_11:407426-409994:-|nuORF ENST00000530683.5_1_11:407853-409994:-|nuORF ENST00000530683.5_1_11:407853-409994:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7577209472656 2 463.758352 925.502152 0.29813 0.00013826 0.90249 0.00041854 1.2006 0.0005568 463.7585944715449 53.467 0.24964 53.015 52.878 53.128 -0.45173 18 11 2 0 0 0 0.028712 1 28924 28924 56.048 27.561 1 2428500 35312 9342 23512 23956 41536 41536 0.036421061056557846 LPLGILMDRF 10 Unmodified _LPLGILMDRF_ 0 0 0 ENSG00000149150|ENST00000278426|SLC43A1;nc|ENSG00000149150|O75387-2|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 ENSG00000149150|ENST00000278426|SLC43A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2269592285156 3 392.22661 1173.658 0.78366 0.00030737 0.17524 6.8732E-05 0.95889 0.0003761 392.22676213108235 26.982 0.60974 23.946 23.609 24.219 -3.0365 101 31 4 0 0 0 0.6606 1 14915 14915 3.8763 0.55669 1 240390000 35313 5986 23513 23957 41537 41537 0.07811808564770217 LPLGLLHNY 9 Unmodified _LPLGLLHNY_ 0 0 0 ENST00000465271.5_1_1:224544568-224548213:+|nuORF ENST00000465271.5_1_1:224544568-224548213:+|nuORF ENST00000465271.5_1_1:224544568-224548213:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.30224609375 2 520.300384 1038.58622 1.0591 0.00055103 0.72862 0.0003791 1.7877 0.00093014 520.3018354927094 70.514 0.84344 64.339 63.862 64.705 -6.1757 161 46 5 0 0 0 0.12841 1 45952 45952 30.225 1.738 1 151770000 35314 13734 23514 23958 41538 41538 0.06846637202556849 LPLGSEERPF 10 Unmodified _LPLGSEERPF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.80419921875 2 572.803488 1143.59242 NaN NaN NaN NaN NaN NaN NaN 51.233 1 50.819 50.319 51.319 -0.41351 0 0 0 0.42631 1 27612 27612 29.841 10.584 1 35315 9321 23515 23959 41539 41539 0.02637110643422602 LPLGSPHCDL 10 Unmodified _LPLGSPHCDL_ 0 0 0 ITGB3|p.R63H|1|0.19|ENSG00000259207|chr17:47283376-47283376|G/A|missense_variant ITGB3|p.R63H|1|0.19|ENSG00000259207|chr17:47283376-47283376|G/A|missense_variant ITGB3|p.R63H|1|0.19|ENSG00000259207|chr17:47283376-47283376|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2681274414062 2 526.265684 1050.51682 0.38876 0.00020459 2.326 0.0012241 2.7148 0.0014287 526.2669020447622 62.459 0.3509 62.459 62.304 62.655 0 39 22 2 0 0 0 0.2178 1 34910 34910 32.305 3.8186 1 18303000 35316 15933 23516 23960 41540 41540 -0.006421898085363864 LPLHCCWPRQY 11 Unmodified _LPLHCCWPRQY_ 0 0 0 REV__ENST00000220244.7_1_15:81241369-81241618:+|nuORF REV__ENST00000220244.7_1_15:81241369-81241618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.5620727539062 3 472.561887 1414.66383 0.56423 0.00026664 -1.2409 -0.00058638 -0.67662 -0.00031974 472.5613638875044 52.085 0.2391 51.652 51.55 51.789 -0.43367 20 11 2 0 0 0 0.70701 1 28122 28122 1.4551 0 1 3769400 + 35317 24757 23517 23961 41541 41541 -0.02691416195216334 LPLHGGYQY 9 Unmodified _LPLHGGYQY_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2679443359375 2 524.266542 1046.51853 NaN NaN NaN NaN NaN NaN NaN 38.929 1 38.929 38.429 39.429 0 0 0 0 0.27711 1 20827 20827 26.341 5.4701 1 35318 10825 23518 23962 41542 41542 -0.0028681272824542248 LPLHGGYQY 9 Unmodified _LPLHGGYQY_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2648315429688 2 524.266542 1046.51853 -0.12528 -6.5678E-05 -1.9597 -0.0010274 -2.085 -0.0010931 524.2653778215371 39.24 0.24653 38.953 38.812 39.059 -0.28687 25 11 3 0 0 0 0.016494 1 20671 20671 67.035 38.862 1 13085000 35319 10825 23518 23962 41543 41543 -0.0028681272824542248 LPLHGGYQY 9 Unmodified _LPLHGGYQY_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.265380859375 2 524.266542 1046.51853 0.58302 0.00030566 -0.4896 -0.00025668 0.093422 4.8978E-05 524.2661586566179 44.137 0.39388 39.285 39.147 39.541 -4.852 50 28 2 0 0 0 0.027803 2 26855 26855;26986 56.541 28.054 1 49375000 35320 10825 23518 23962 41544;41545 41544 -0.0028681272824542248 LPLHGGYQY 9 Unmodified _LPLHGGYQY_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.266542 1046.51853 0.1467 7.691E-05 -2.2469 -0.001178 -2.1002 -0.0011011 524.7668869771926 38.869 0.12127 38.88 38.779 38.9 0.011452 -0.15922 -0.0013928 NaN 67.035 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 790470 35321 10825 23518 23962 -0.0028681272824542248 LPLHHHGYS 9 Unmodified _LPLHHHGYS_ 0 0 0 ENST00000447251.2_1_3:135768160-135797993:+|nuORF ENST00000447251.2_1_3:135768160-135797993:+|nuORF ENST00000447251.2_1_3:135768160-135797993:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2862548828125 2 530.769783 1059.52501 0.43901 0.00023301 -0.058655 -3.1132E-05 0.38036 0.00020188 530.7700249749104 84.487 0.31467 83.987 83.864 84.179 -0.49961 24 14 2 0 0 0 0.21052 1 46177 46177 6.7232 0 1 1577700 35322 13477 23519 23963 41546 41546 -0.0023687477687417413 LPLHSSKEDAY 11 Unmodified _LPLHSSKEDAY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5478515625 3 420.547065 1258.61937 0.83067 0.00034934 1.1446 0.00048135 1.9753 0.00083069 420.54721395834133 28.187 0.23593 25.038 24.861 25.097 -3.1482 20 12 2 0 0 0 0.39848 1 15678 15678 17.572 0 1 5071900 35323 2429 23520 23964 41547 41547 0.00040174463970288343 LPLHTAPLL 9 Unmodified _LPLHTAPLL_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.3108825683594 2 487.805303 973.596052 0.7858 0.00038332 2.951 0.0014395 3.7368 0.0018228 487.8058232599792 62.51 0.26756 62.022 61.872 62.14 -0.48764 17 12 2 0 0 0 0.18118 1 34120 34120 18.135 7.9516 1 1823800 35324 6687 23521 23965 41548 41548 0.10819825207931899 LPLHTAPLL 9 Unmodified _LPLHTAPLL_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3099975585938 2 487.805303 973.596052 0.51236 0.00024993 3.0006 0.0014637 3.513 0.0017137 487.8064221585607 62.137 0.272 62.104 61.888 62.16 -0.032787 20 13 2 0 0 0 0.19298 1 33841 33841 13.508 2.3934 1 4542000 35325 6687 23521 23965 41549 41549 0.10819825207931899 LPLHVLPLY 9 Unmodified _LPLHVLPLY_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8291015625 2 532.828778 1063.643 0.68276 0.00036379 0.1275 6.7935E-05 0.81026 0.00043173 532.8287392720852 80.82 0.43471 80.878 80.677 81.111 0.057587 48 16 4 0 0 0 0.016115 1 44648 44648 67.413 11.365 1 21138000 35326 6082 23522 23966 41550 41550 0.1137268475908968 LPLHVLPLY 9 Unmodified _LPLHVLPLY_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8297119140625 2 532.828778 1063.643 1.3949 0.00074323 -0.15231 -8.1157E-05 1.2426 0.00066207 532.8287797913536 98.159 0.37118 91.984 91.701 92.072 -6.1757 49 23 4 0 0 0 0.028712 1 65076 65076 56.048 10.298 1 154030000 35327 6082 23522 23966 41551 41551 0.1137268475908968 LPLISIVGY 9 Unmodified _LPLISIVGY_ 0 0 0 nc|ENSG00000168903|Q6UXE8-2|BTNL3;ENSG00000168903|ENST00000342868|BTNL3 nc|ENSG00000168903|Q6UXE8-2|BTNL3 nc|ENSG00000168903|Q6UXE8-2|BTNL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.2428588867188 2 487.799686 973.584819 0.94657 0.00046173 -0.36534 -0.00017821 0.58123 0.00028352 487.79945152028836 100.5 0.11991 94.321 94.254 94.374 -6.1757 9 6 2 0 0 0 0.17666 1 67156 67156 19.439 1.304 1 19030000 35328 7811 23523 23967 41552 41552 0.09697003113797109 LPLKAEHKQF 10 Unmodified _LPLKAEHKQF_ 0 0 0 nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000066027|Q15172-2|PPP2R5A nc|ENSG00000154001|Q16537-3|PPP2R5E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8499755859375 2 605.850773 1209.68699 NaN NaN NaN NaN NaN NaN NaN 81.209 1 80.716 80.216 81.216 -0.49247 0 0 0 0.92825 1 44470 44470 6.7232 0 1 35329 6288;923 23524 23968 41553 41553 0.09053669185414037 LPLKEEHKIF 10 Unmodified _LPLKEEHKIF_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENST00000556218.5_1_14:102349680-102375988:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.579833984375 3 418.579929 1252.71796 -0.46395 -0.0001942 0.18689 7.8228E-05 -0.27706 -0.00011597 418.5798601297034 35.972 0.19221 35.749 35.621 35.813 -0.2224 17 8 3 0 0 0 0.2881 1 18848 18848 28.181 6.0724 1 4142900 35330 1242 23525 23969 41554 41554 0.10170822499640053 LPLKEEHKIF 10 Unmodified _LPLKEEHKIF_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;ENST00000556218.5_1_14:102349680-102375988:+|nuORF nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5799865722656 3 418.579929 1252.71796 0.88667 0.00037114 0.64654 0.00027063 1.5332 0.00064177 418.5801333484338 40.53 0.28899 36 35.824 36.113 -4.5294 30 17 2 0 0 0 0.077181 1 24193 24193 51.765 24.636 1 14954000 35331 1242 23525 23969 41555 41555 0.10170822499640053 LPLKEEHKM 9 Unmodified _LPLKEEHKM_ 0 0 0 nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D nc|ENSG00000112640|Q14738-3|PPP2R5D nc|ENSG00000112640|Q14738-3|PPP2R5D MSMS AL20221201_MKP_PDAC_01 4 375.5424499511719 3 375.542598 1123.60597 NaN NaN NaN NaN NaN NaN NaN 20.204 1 17.511 17.011 18.011 -2.693 0 0 0 0.36855 1 10753 10753 21.59 7.9753 1 35332 2905 23526 23970 41556 41556 0.04910645150994242 LPLKVIVM 8 Oxidation (M) _LPLKVIVM(Oxidation (M))_ LPLKVIVM(1) LPLKVIVM(54) 0 0 1 ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7982482910156 2 464.798632 927.582711 0.35759 0.00016621 0.36485 0.00016958 0.72244 0.00033579 464.7989080678092 54.8 0.33769 54.733 54.542 54.88 -0.066936 38 16 3 0 0 0 0.31612 2 29692 29692;29801 53.576 25.089 1 3060600 35333 297 23527 23971 41557;41558 41557 26 0.11602251104363859 LPLLAVCDY 9 Carbamidomethyl (C) _LPLLAVC(Carbamidomethyl (C))DY_ LPLLAVC(1)DY LPLLAVC(78)DY 0 1 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2787475585938 2 532.27826 1062.54197 1.1225 0.00059746 -0.12338 -6.5671E-05 0.99908 0.00053179 532.2782859670508 88.443 0.96255 82.267 81.939 82.901 -6.1757 112 53 3 0 0 0 0.010712 2 58392 58262;58392 78.445 42.401 1 78029000 35334 16412 23528 23972 41559;41560 41560 1027 0.01319864994047748 LPLLCLLRL 9 Unmodified _LPLLCLLRL_ 0 0 0 ENST00000579645.5_1_17:20924532-20946649:-|nuORF ENST00000579645.5_1_17:20924532-20946649:-|nuORF ENST00000579645.5_1_17:20924532-20946649:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.7310791015625 3 351.899946 1052.67801 0.64102 0.00022557 3.0482 0.0010726 3.6892 0.0012982 351.9015119937741 25.347 0.3881 22.464 22.289 22.677 -2.8831 51 22 3 0 0 0 0.21404 1 13901 13901 5.2969 0.39987 1 15505000 35335 15549 23529 23973 41561 41561 0.15377604295372294 LPLLKAQEY 9 Unmodified _LPLLKAQEY_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.8146362304688 2 537.813325 1073.6121 NaN NaN NaN NaN NaN NaN NaN 50.974 1 50.561 50.061 51.061 -0.41351 0 0 0 0.059498 1 27466 27466 53.833 3.8998 1 35336 5970 23530 23974 41562 41562 0.07823486654183398 LPLLKAQEY 9 Unmodified _LPLLKAQEY_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8135375976562 2 537.813325 1073.6121 0.39729 0.00021367 1.6171 0.0008697 2.0144 0.0010834 537.8131535740661 56.774 0.35919 50.797 50.615 50.975 -5.9769 58 20 4 0 0 0 0.0059585 1 36278 36278 114.65 32.759 1 67734000 35337 5970 23530 23974 41563 41563 0.07823486654183398 LPLLKAQEY 9 Unmodified _LPLLKAQEY_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.813325 1073.6121 0.7842 0.00042175 0.79431 0.00042719 1.5785 0.00084894 537.8133478363252 50.681 0.1586 50.627 50.53 50.688 -0.053871 -0.084751 -0.00038324 NaN 114.65 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 957340 35338 5970 23530 23974 0.07823486654183398 LPLLLLLKPL 10 Unmodified _LPLLLLLKPL_ 0 0 0 ENSG00000280021|ENST00000624103|OR51F1 ENSG00000280021|ENST00000624103|OR51F1 ENSG00000280021|ENST00000624103|OR51F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.482421875 3 378.273778 1131.7995 NaN NaN NaN NaN NaN NaN NaN 86.151 1 86.151 85.651 86.651 0 0 0 0 1.0061 1 47726 47726 0 0 1 35339 10944 23531 23975 41564 41564 0.23887549929531815 LPLLLLLKPL 10 Unmodified _LPLLLLLKPL_ 0 0 0 ENSG00000280021|ENST00000624103|OR51F1 ENSG00000280021|ENST00000624103|OR51F1 ENSG00000280021|ENST00000624103|OR51F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.87744140625 3 378.273778 1131.7995 NaN NaN NaN NaN NaN NaN NaN 15.764 1 15.75 15.25 16.25 -0.014067 0 0 0 1.0061 1 7752 7752 0 0 1 35340 10944 23531 23975 41565 41565 0.23887549929531815 LPLLLLLPM 9 Oxidation (M) _LPLLLLLPM(Oxidation (M))_ LPLLLLLPM(1) LPLLLLLPM(56) 0 0 1 nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH nc|ENSG00000130175|P14314-2|PRKCSH MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8353881835938 2 519.835214 1037.65588 0.86708 0.00045074 -1.2692 -0.00065976 -0.40209 -0.00020902 519.8345385388651 102.03 0.079712 95.857 95.797 95.877 -6.1757 5 3 2 0 0 0 0.028712 1 68495 68495 56.048 10.298 1 4630400 35341 4186 23532 23976 41566 41566 740 0.13855379826964054 LPLLMFIIF 9 Unmodified _LPLLMFIIF_ 0 0 0 ENST00000438189.6_1_11:67226476-67226593:+|nuORF ENST00000438189.6_1_11:67226476-67226593:+|nuORF ENST00000438189.6_1_11:67226476-67226593:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8392944335938 2 553.837757 1105.66096 0.41852 0.00023179 0.13001 7.2005E-05 0.54853 0.0003038 553.8379268978455 61.184 0.518 61.14 60.927 61.445 -0.04351 56 25 3 0 0 0 0.070838 1 33436 33436 45.75 0 1 7891900 35342 13359 23533 23977 41567 41567 0.11235683689574216 LPLLPNVSY 9 Unmodified _LPLLPNVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2933654785156 2 508.294768 1014.57498 0.21338 0.00010846 0.50279 0.00025557 0.71618 0.00036403 508.2950983211654 83.867 0.29038 83.367 83.217 83.507 -0.49961 21 11 2 0 0 0 0.12841 3 45858 45845;45858;45949 30.225 13.283 1 1182900 35343 4594 23534 23978 41568;41569;41570 41569 0.06827815108420054 LPLLPNVSY 9 Unmodified _LPLLPNVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.294677734375 2 508.294768 1014.57498 0.63581 0.00032318 -0.1771 -9.0021E-05 0.45871 0.00023316 508.2945824021734 83.254 0.41472 83.317 83.077 83.491 0.063171 40 15 4 0 0 0 0.0094915 2 46007 46007;46106 81.864 34.943 1 15179000 35344 4594 23534 23978 41571;41572 41571 0.06827815108420054 LPLLPNVSY 9 Unmodified _LPLLPNVSY_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2951354980469 2 508.294768 1014.57498 1.0076 0.00051217 -0.35384 -0.00017985 0.65378 0.00033231 508.2943647140528 91.873 0.90674 85.697 85.312 86.218 -6.1757 118 52 3 0 0 0 0.012148 5 60669 60545;60669;60787;60915;61059 74.423 38.379 1 47553000 35345 4594 23534 23978 41573;41574;41575;41576;41577 41574 0.06827815108420054 LPLLQPHLPT 10 Unmodified _LPLLQPHLPT_ 0 0 0 REV__nc|ENSG00000108506|Q9H0H0|INTS2 REV__nc|ENSG00000108506|Q9H0H0|INTS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5646362304688 3 376.89737 1127.67028 0.23412 8.8239E-05 3.4617 0.0013047 3.6958 0.0013929 376.89881376377417 40.033 0.25128 39.736 39.591 39.843 -0.29716 16 11 2 0 0 0 0.23693 1 21143 21143 3.3196 0 1 2375300 + 35346 18610 23535 23979 41578 41578 0.11155168299433171 LPLLRSVL 8 Unmodified _LPLLRSVL_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.8082275390625 2 455.807845 909.601138 1.0521 0.00047953 0.069865 3.1845E-05 1.1219 0.00051138 455.8077084143136 94.903 0.36259 88.727 88.509 88.872 -6.1757 28 20 2 0 0 0 0.52066 1 62841 62841 32.786 3.7041 1 9542400 35347 2634;7659 23536 23980 41579 41579 0.1427212907054809 LPLLRVRLLG 10 Unmodified _LPLLRVRLLG_ 0 0 0 nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA nc|ENSG00000165195|P37287-2|PIGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3936767578125 2 575.395151 1148.77575 NaN NaN NaN NaN NaN NaN NaN 104.37 1 104.32 103.82 104.82 -0.048737 0 0 0 1.0024 1 57949 57949 0.40072 0 1 35348 16351 23537 23981 41580 41580 0.20731129215732835 LPLLSVKF 8 Unmodified _LPLLSVKF_ 0 0 0 ENSG00000179454|ENST00000396128|KLHL28;nc|ENSG00000179454|Q9NXS3-2|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7976684570312 2 458.796946 915.57934 1.2629 0.0005794 -0.060719 -2.7858E-05 1.2022 0.00055154 458.7971065961586 96.343 0.21178 90.167 90.041 90.253 -6.1757 18 12 2 0 0 0 0.17954 1 63848 63848 78.149 10.069 1 8078600 35349 8836 23538 23982 41581 41581 0.11817324321987144 LPLLSYNN 8 Unmodified _LPLLSYNN_ 0 0 0 ENST00000409785.8_1_2:85276521-85276596:+|nuORF ENST00000409785.8_1_2:85276521-85276596:+|nuORF ENST00000409785.8_1_2:85276521-85276596:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.5037841796875 1 933.504009 932.496732 1.0018 0.00093521 -2.5834 -0.0024116 -1.5816 -0.0014764 933.5016633290446 102.24 0.089905 96.065 96.003 96.093 -6.1757 6 3 2 0 0 0 0.80624 1 68616 68616 2.8892 0 1 6134200 35350 12965 23539 23983 41582 41582 0.027783825231722403 LPLLTNQYL 9 Unmodified _LPLLTNQYL_ 0 0 0 REV__ENST00000295704.6_1_2:219529923-219530909:-|nuORF REV__ENST00000295704.6_1_2:219529923-219530909:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.8146362304688 2 537.813325 1073.6121 NaN NaN NaN NaN NaN NaN NaN 51.168 1 50.754 50.254 51.254 -0.41351 0 0 0 0.39118 1 27575 27575 20.415 3.3016 1 + 35351 25262 23540 23984 41583 41583 0.07823486654183398 LPLLVSRL 8 Unmodified _LPLLVSRL_ 0 0 0 REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.8084716796875 2 455.807845 909.601138 1.127 0.00051368 1.0308 0.00046983 2.1577 0.0009835 455.80804042195837 71.466 0.38358 71.505 71.301 71.685 0.039032 38 17 3 0 0 0 0.52622 1 39357 39357 32.305 0 1 1922400 + 35352 26015 23541 23985 41584 41584 0.1427212907054809 LPLMIQIDTY 10 Unmodified _LPLMIQIDTY_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8271484375 2 603.825575 1205.6366 -0.10618 -6.4114E-05 -0.20672 -0.00012482 -0.3129 -0.00018893 603.8255016183866 99.698 0.14119 93.522 93.432 93.574 -6.1757 15 8 2 0 0 0 0.1028 1 66490 66490 46.021 24.274 1 19548000 35353 1363 23542 23986 41585 41585 0.04200378745395028 LPLMLLSEF 9 Unmodified _LPLMLLSEF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.79833984375 2 531.798829 1061.5831 0.66518 0.00035374 -1.3722 -0.00072971 -0.70699 -0.00037597 531.7984702922784 101.89 0.054459 95.714 95.68 95.735 -6.1757 4 2 2 0 0 0 0.1492 1 68407 68407 28.173 7.302 1 5075000 35354 8367 23543 23987 41586 41586 0.054776260335529514 LPLMLNHFVKP 11 Unmodified _LPLMLNHFVKP_ 0 0 0 REV__ENSG00000136546|ENST00000643258|SCN7A REV__ENSG00000136546|ENST00000643258|SCN7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.880859375 2 654.878476 1307.7424 4.1101 0.0026916 0.62236 0.00040757 4.7325 0.0030992 654.8786955935938 98.366 0.26126 98.338 98.142 98.404 -0.028282 24 9 4 0 0 0 0.54936 1 54629 54629 13.906 0 1 2287100 + 35355 20169 23544 23988 41587 41587 0.10083759381495838 LPLMNPEGLPG 11 Unmodified _LPLMNPEGLPG_ 0 0 0 ENST00000368178.3_1_1:157718396-157736689:-|nuORF;ENST00000368181.4_1_1:157716536-157736689:-|nuORF ENST00000368178.3_1_1:157718396-157736689:-|nuORF ENST00000368178.3_1_1:157718396-157736689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3015747070312 2 569.302267 1136.58998 0.79687 0.00045366 -0.049639 -2.826E-05 0.74723 0.0004254 569.3019650084084 67.565 1.6495 61.39 60.698 62.348 -6.1757 218 95 4 0 0 0 0.21511 1 43919 43919 31.268 0.6318 1 306750000 35356 12259 23545 23989 41588 41588 0.027149389141186475 LPLNSFLRF 9 Unmodified _LPLNSFLRF_ 0 0 0 REV__L1ME3Cz_dup8273|chr11:69369281-69369766:-|1.1578720303621837|0.2471547065729821|2.23|167.0|23|2|anti-sense REV__L1ME3Cz_dup8273|chr11:69369281-69369766:-|1.1578720303621837|0.2471547065729821|2.23|167.0|23|2|anti-sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.2551879882812 2 553.821484 1105.62842 1.2951 0.00071726 0.54507 0.00030187 1.8402 0.0010191 553.8218187776329 90.849 0.82887 84.673 84.127 84.956 -6.1757 114 47 3 0 0 0 0.18521 1 60233 60233 11.64 0 1 83170000 + 35357 29420 23546 23990 41589 41589 0.07982612610953765 LPLNSVYVY 9 Unmodified _LPLNSVYVY_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2926025390625 2 534.292225 1066.5699 0.43804 0.00023404 0.15298 8.1735E-05 0.59102 0.00031578 534.2922608403684 71.323 0.55907 70.846 70.611 71.17 -0.47735 105 23 6 0 0 0 0.012148 2 39065 38965;39065 74.423 45.936 1 26497000 35358 3394 23547 23991 41590;41591 41591 0.039275112458199146 LPLNSVYVY 9 Unmodified _LPLNSVYVY_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2924194335938 2 534.292225 1066.5699 1.0684 0.00057086 0.029141 1.557E-05 1.0976 0.00058643 534.292101531302 70.81 0.42749 70.846 70.571 70.999 0.035515 51 19 3 0 0 0 0.009483 2 39003 38896;39003 81.89 47.488 1 16162000 35359 3394 23547 23991 41592;41593 41593 0.039275112458199146 LPLNSVYVY 9 Unmodified _LPLNSVYVY_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2931518554688 2 534.292225 1066.5699 1.0155 0.00054257 -0.36405 -0.00019451 0.65145 0.00034806 534.2916108453061 79.094 0.75613 72.919 72.548 73.304 -6.1757 123 42 4 0 0 0 0.012148 3 51795 51670;51795;51918 74.423 45.936 1 188070000 35360 3394 23547 23991 41594;41595;41596 41595 0.039275112458199146 LPLNSVYVY 9 Unmodified _LPLNSVYVY_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20221201_MKP_PDAC_01 4 1068.574096679688 1 1067.57717 1066.5699 0.92864 0.00099139 -1.2273 -0.0013102 -0.29862 -0.00031879 1067.5743919111499 79.123 0.5712 72.947 72.647 73.218 -6.1757 75 31 3 0 0 0 0.06294 1 51910 51910 41.84 16.44 1 32683000 35361 3394 23547 23991 41597 41597 0.039275112458199146 LPLNTNIRLAY 11 Unmodified _LPLNTNIRLAY_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8765869140625 2 644.374612 1286.73467 1.113 0.00071719 -0.61954 -0.00039921 0.49347 0.00031798 644.3740582329518 66.496 0.52723 66.506 66.28 66.807 0.0095596 72 25 4 0 0 0 3.9134E-06 2 36409 36409;36509 97.741 53.969 1 54423000 35362 1354 23548 23992 41598;41599 41598 0.1027732338561691 LPLPACLNPLL 11 Unmodified _LPLPACLNPLL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3471069335938 2 582.346477 1162.6784 NaN NaN NaN NaN NaN NaN NaN 87.875 1 87.371 86.871 87.871 -0.50423 0 0 0 0.84159 1 48065 48065 10.074 2.1638 1 35363 4485 23549 23993 41600 41600 0.1035697922457075 LPLPAERVTL 10 Unmodified _LPLPAERVTL_ 0 0 0 ENSG00000161202|ENST00000313143|DVL3;nc|ENSG00000161202|Q92997-2|DVL3;ENST00000462665.5_1_3:183873423-183882592:+|nuORF ENSG00000161202|ENST00000313143|DVL3 ENSG00000161202|ENST00000313143|DVL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3408203125 2 554.839874 1107.66519 0.66393 0.00036838 -0.99889 -0.00055422 -0.33495 -0.00018584 554.8394938419468 62.98 0.20226 62.494 62.44 62.642 -0.48617 17 9 2 0 0 0 0.52888 1 34350 34350 21.59 9.3495 1 2909600 35364 6786 23550 23994 41601 41601 0.11566864436849755 LPLPAHVL 8 Unmodified _LPLPAHVL_ 0 0 0 REV__ENSG00000166813|ENST00000394412|KIF7 REV__ENSG00000166813|ENST00000394412|KIF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2739868164062 2 430.273638 858.532724 0.3871 0.00016656 -0.085644 -3.685E-05 0.30146 0.00012971 430.2736598741654 67.664 0.43532 67.682 67.435 67.87 0.018028 33 21 2 0 0 0 0.61999 1 37165 37165 24.21 0 1 4741600 + 35365 22151 23551 23995 41602 41602 0.09779884490706081 LPLPDPLKY 9 Unmodified _LPLPDPLKY_ 0 0 0 nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2;nc|ENSG00000203880|Q9NV79-3|PCMTD2;ENST00000266078.7_1_20:62903543-62904950:+|nuORF nc|ENSG00000203880|Q9NV79-2|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3123779296875 2 528.310418 1054.60628 1.1053 0.00058395 -0.19873 -0.00010499 0.90658 0.00047895 528.3103516142726 81.481 0.92168 75.305 74.927 75.849 -6.1757 86 52 2 0 0 0 0.025842 2 53572 53415;53572 57.722 27.497 1 18726000 35366 10231 23552 23996 41603;41604 41604 0.08116388142502728 LPLPDVRLFKY 11 Unmodified _LPLPDVRLFKY_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.60595703125 3 454.271096 1359.79146 0.47629 0.00021637 0.81007 0.00036799 1.2864 0.00058436 454.60588766953936 76.482 0.23515 76.53 76.397 76.633 0.047943 13 9 2 0 0 0 0.64126 1 42227 42227 9.2438 5.3979 1 1837900 35367 6704 23553 23997 41605 41605 0.12595370942108275 LPLPDVRLFKY 11 Unmodified _LPLPDVRLFKY_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MSMS AL20221201_MKP_PDAC_01 4 454.2716064453125 3 454.271096 1359.79146 NaN NaN NaN NaN NaN NaN NaN 95.052 1 88.876 88.376 89.376 -6.1757 0 0 0 0.23477 1 62960 62960 37.251 26.936 1 35368 6704 23553 23997 41606 41606 0.12595370942108275 LPLPHLRASL 10 Unmodified _LPLPHLRASL_ 0 0 0 ENST00000582276.1_1_17:37830882-37844267:-|nuORF ENST00000582276.1_1_17:37830882-37844267:-|nuORF ENST00000582276.1_1_17:37830882-37844267:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.9018249511719 3 372.901114 1115.68151 1.6786 0.00062595 0.25369 9.4601E-05 1.9323 0.00072055 372.9010288406693 55.557 0.2412 49.636 49.525 49.766 -5.9211 18 14 2 0 0 0 0.43662 1 35396 35396 19.626 2.1833 1 10272000 35369 15570 23554 23998 41607 41607 0.1282999039360675 LPLPLPLPSP 10 Unmodified _LPLPLPLPSP_ 0 0 0 REV__ENST00000327111.7_1_5:92920401-92920743:+|nuORF REV__ENST00000327111.7_1_5:92920401-92920743:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3285522460938 2 522.328611 1042.64267 1.1201 0.00058504 -0.39764 -0.0002077 0.72241 0.00037734 522.328315853259 81.366 1.6194 75.19 74.424 76.044 -6.1757 189 91 3 0 0 0 0.04925 1 53867 53867 58.679 0 1 38088000 + 35370 25569 23555 23999 41608 41608 0.12305265039231017 LPLPNDKTL 9 Unmodified _LPLPNDKTL_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.2776794433594 2 505.797675 1009.5808 0.70743 0.00035782 0.68903 0.00034851 1.3965 0.00070633 505.7980542486355 54.548 0.31745 48.682 48.531 48.848 -5.8653 31 19 4 0 0 0 0.18482 1 34680 34680 13.042 4.2971 1 14807000 35371 5299 23556 24000 41609 41609 0.07638913620087351 LPLPNDKTLLY 11 Unmodified _LPLPNDKTLLY_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8709716796875 2 643.871371 1285.72819 0.20232 0.00013027 -0.35888 -0.00023107 -0.15656 -0.00010081 643.871094655885 67.145 0.47012 66.663 66.419 66.889 -0.48218 58 21 3 0 0 0 0.0075717 2 36705 36603;36705 70.929 19.299 1 10917000 35372 5299 23557 24001 41610;41611 41611 0.09675385434229611 LPLPPGLKQVL 11 Unmodified _LPLPPGLKQVL_ 0 0 0 ENST00000569380.5_1_16:1827100-1828231:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3;ENST00000564709.5_1_16:1827100-1828401:-|nuORF ENST00000569380.5_1_16:1827100-1828231:-|nuORF;ENSG00000162032|ENST00000566339|SPSB3 ENSG00000162032|ENST00000566339|SPSB3 MSMS AL20221201_MKP_PDAC_01 4 587.8828125 2 587.881542 1173.74853 NaN NaN NaN NaN NaN NaN NaN 95.947 1 89.772 89.272 90.272 -6.1757 0 0 0 0.071149 1 63563 63563 56.177 31.503 1 35373 15456;6829 23558 24002 41612 41612 0.168606008847064 LPLPPPQLSI 10 Unmodified _LPLPPPQLSI_ 0 0 0 ENST00000572585.5_1_17:909322-915797:-|nuORF ENST00000572585.5_1_17:909322-915797:-|nuORF ENST00000572585.5_1_17:909322-915797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3303833007812 2 537.831517 1073.64848 0.092792 4.9906E-05 -2.054 -0.0011047 -1.9612 -0.0010548 537.8314406532561 72.718 0.95702 72.76 72.151 73.108 0.041725 156 45 4 0 0 0 0.37389 2 40102 40102;40213 23.148 6.2061 1 55894000 35374 15493 23559 24003 41613;41614 41613 0.11460363550895636 LPLPPPTFFP 10 Unmodified _LPLPPPTFFP_ 0 0 0 nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2562255859375 2 563.320786 1124.62702 1.2037 0.00067808 -0.53853 -0.00030337 0.66518 0.00037471 563.3206551992913 57.721 0.43476 57.655 57.418 57.852 -0.066036 44 21 3 0 0 0 0.22327 1 31377 31377 19.257 3.4098 1 6841700 35375 16266 23560 24004 41615 41615 0.0696897852217262 LPLPQGWAL 9 Unmodified _LPLPQGWAL_ 0 0 0 REV__ENST00000416970.5_1_9:139619206-139619534:-|nuORF REV__ENST00000416970.5_1_9:139619206-139619534:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7911071777344 2 497.789653 993.564752 0.29914 0.00014891 0.90527 0.00045063 1.2044 0.00059954 497.79016916748907 53.137 0.26824 52.686 52.535 52.803 -0.45173 32 13 3 0 0 0 0.18465 1 28708 28708 24.674 1.5255 1 4793700 + 35376 26785 23561 24005 41616 41616 0.06771252173848552 LPLPQGWAL 9 Unmodified _LPLPQGWAL_ 0 0 0 REV__ENST00000416970.5_1_9:139619206-139619534:-|nuORF REV__ENST00000416970.5_1_9:139619206-139619534:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.789653 993.564752 0.29914 0.00014891 0.90527 0.00045063 1.2044 0.00059954 497.79016916748907 53.137 0.26824 52.686 52.535 52.803 -0.45173 -0.0099842 0.00029733 NaN 24.674 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4793700 + 35377 26785 23561 24005 0.06771252173848552 LPLPQNVKDY 10 Unmodified _LPLPQNVKDY_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123;ENST00000467016.1_1_10:12238244-12240776:+|nuORF ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.8280029296875 2 593.826963 1185.63937 0.4084 0.00024252 1.1137 0.00066134 1.5221 0.00090386 593.8281474145609 48.985 0.21563 48.614 48.499 48.714 -0.37172 25 10 3 0 0 0 0.0089457 1 26314 26314 83.429 35.68 1 3881300 35378 6115 23562 24006 41617 41617 0.05397970194553636 LPLPQNVKDY 10 Unmodified _LPLPQNVKDY_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123;ENST00000467016.1_1_10:12238244-12240776:+|nuORF ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8282470703125 2 593.826963 1185.63937 0.44075 0.00026173 0.283 0.00016806 0.72375 0.00042978 593.8270177994807 54.643 0.3093 48.777 48.668 48.977 -5.8653 30 18 2 0 0 0 0.0095113 1 34700 34700 100.71 53.114 1 21113000 35379 6115 23562 24006 41618 41618 0.05397970194553636 LPLPRGVVSL 10 Unmodified _LPLPRGVVSL_ 0 0 0 ENSG00000221838|ENST00000359593|AP4M1 ENSG00000221838|ENST00000359593|AP4M1 ENSG00000221838|ENST00000359593|AP4M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8368530273438 2 525.837134 1049.65972 0.58251 0.00030631 0.071905 3.781E-05 0.65441 0.00034412 525.8371350592554 68.719 0.31767 68.744 68.562 68.88 0.025154 33 14 3 0 0 0 0.018732 1 37722 37722 76.825 16.751 1 9719200 35380 10552 23563 24007 41619 41619 0.1368718564503979 LPLPRGVVSL 10 Unmodified _LPLPRGVVSL_ 0 0 0 ENSG00000221838|ENST00000359593|AP4M1 ENSG00000221838|ENST00000359593|AP4M1 ENSG00000221838|ENST00000359593|AP4M1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.837646484375 2 525.837134 1049.65972 0.7476 0.00039311 -0.40199 -0.00021138 0.3456 0.00018173 525.8369834909066 82.76 0.9409 76.584 76.124 77.065 -6.1757 79 52 2 0 0 0 0.018732 3 54375 54245;54375;54518 76.825 16.751 1 10856000 35381 10552 23563 24007 41620;41621;41622 41621 0.1368718564503979 LPLPSDTVL 9 Unmodified _LPLPSDTVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.5530395507812 1 954.550625 953.543348 0.10407 9.9337E-05 0.67275 0.00064217 0.77681 0.00074151 954.5514196750994 74.25 0.37143 74.25 73.994 74.365 0 28 17 2 0 0 0 0.070838 1 41338 41338 39.957 5.8549 1 702430 35382 10835 23564 24008 41623 41623 0.0647182235445598 LPLPSDTVL 9 Unmodified _LPLPSDTVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.5612182617188 1 954.550625 953.543348 0.63409 0.00060527 3.6688 0.0035021 4.3029 0.0041074 954.5555777938075 74.614 0.26163 74.138 74.02 74.281 -0.47588 15 10 2 0 0 0 0.026094 2 40855 40806;40855 57.471 15.377 1 537000 35383 10835 23564 24008 41624;41625 41625 0.0647182235445598 LPLPSDTVL 9 Unmodified _LPLPSDTVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7789306640625 2 477.778951 953.543348 0.5516 0.00026354 0.025671 1.2265E-05 0.57727 0.00027581 477.77900511174875 82.488 0.54539 76.312 76.044 76.589 -6.1757 59 30 2 0 0 0 0.019979 2 54253 54118;54253 63.563 6.0915 1 25534000 35384 10835 23564 24008 41626;41627 41627 0.0647182235445598 LPLPSDTVL 9 Unmodified _LPLPSDTVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.5509643554688 1 954.550625 953.543348 0.33862 0.00032323 -0.64355 -0.0006143 -0.30493 -0.00029107 954.5499425901637 82.455 0.29243 76.279 76.197 76.49 -6.1757 23 16 2 0 0 0 0.010877 2 54174 54174;54295 77.984 10.64 1 8441300 35385 10835 23564 24008 41628;41629 41628 0.0647182235445598 LPLPSHSSVQM 11 Oxidation (M) _LPLPSHSSVQM(Oxidation (M))_ LPLPSHSSVQM(1) LPLPSHSSVQM(110) 0 0 1 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3075561523438 2 606.308081 1210.60161 -0.2796 -0.00016952 0.18389 0.00011149 -0.095709 -5.8029E-05 606.3078667920607 34.467 0.19921 34.276 34.152 34.351 -0.19131 26 8 4 0 0 0 8.3658E-09 1 17988 17988 111.31 76.907 1 7799200 35386 4278;14369 23565 24009 41630 41630 762 0.004731359374318345 LPLPSHSSVQM 11 Oxidation (M) _LPLPSHSSVQM(Oxidation (M))_ LPLPSHSSVQM(1) LPLPSHSSVQM(140) 0 0 1 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3080444335938 2 606.308081 1210.60161 0.53339 0.0003234 0.092955 5.6359E-05 0.62635 0.00037976 606.3080759780055 39.199 0.33053 34.748 34.616 34.946 -4.4509 29 20 2 0 0 0 2.2157E-15 1 23243 23243 139.78 99.832 1 10220000 35387 4278;14369 23565 24009 41631 41631 762 0.004731359374318345 LPLPSHSSVQM 11 Unmodified _LPLPSHSSVQM_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3111572265625 2 598.310623 1194.60669 0.53625 0.00032085 -0.072157 -4.3172E-05 0.46409 0.00027767 598.3106371356165 52.887 0.262 47.083 46.937 47.199 -5.8042 18 13 2 0 0 0 6.2664E-11 1 33376 33376 121.35 69.716 1 23133000 35388 4278;14369 23565 24010 41632 41632 0.017174398000406654 LPLPSHSSVQM 11 Unmodified _LPLPSHSSVQM_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 598.310623 1194.60669 0.53241 0.00031854 2.6098 0.0015615 3.1422 0.00188 598.8118197287761 47.469 0.1578 47.43 47.34 47.498 -0.038643 0.17383 0.0026014 NaN 121.35 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1412100 35389 4278;14369 23565 24010 0.017174398000406654 LPLPSNTPTF 10 Unmodified _LPLPSNTPTF_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.79541015625 2 543.795132 1085.57571 0.15205 8.2682E-05 -0.50036 -0.00027209 -0.34831 -0.00018941 543.79507201103 70.733 0.386 70.255 70.161 70.547 -0.47735 29 18 2 0 0 0 0.18021 1 38722 38722 36.127 14.38 1 1478000 35390 5517 23566 24011 41633 41633 0.036346097574551095 LPLPSNTPTF 10 Unmodified _LPLPSNTPTF_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7950439453125 2 543.795132 1085.57571 0.58067 0.00031576 -0.40746 -0.00022158 0.1732 9.4187E-05 543.7949563290152 70.289 0.45486 70.325 70.094 70.549 0.035515 54 21 3 0 0 0 0.041224 1 38678 38678 62.573 18.714 1 2794800 35391 5517 23566 24011 41634 41634 0.036346097574551095 LPLPSNTPTF 10 Unmodified _LPLPSNTPTF_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7941284179688 2 543.795132 1085.57571 0.15979 8.6895E-05 -0.59173 -0.00032178 -0.43194 -0.00023489 543.7948830069452 78.503 0.55502 72.328 72.073 72.628 -6.1757 56 34 2 0 0 0 0.012821 1 51451 51451 82.529 14.449 1 24864000 35392 5517 23566 24011 41635 41635 0.036346097574551095 LPLPSPALEY 10 Unmodified _LPLPSPALEY_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3031616210938 2 550.305332 1098.59611 -0.51516 -0.00028349 -1.055 -0.00058055 -1.5701 -0.00086404 550.3044014414345 78.203 0.3168 77.717 77.571 77.888 -0.48582 23 13 3 0 0 0 0.42068 1 42841 42841 20.454 9.6297 1 1661700 35393 8007 23567 24012 41636 41636 0.05075780417269016 LPLPSQVGSRY 11 Unmodified _LPLPSQVGSRY_ 0 0 0 ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8380737304688 2 608.837862 1215.66117 0.30388 0.00018501 0.3097 0.00018856 0.61358 0.00037357 608.8378425148087 48.88 0.24665 48.509 48.369 48.616 -0.37172 30 12 3 0 0 0 0.074411 1 26234 26234 47.732 11.605 1 10519000 35394 12694 23568 24013 41637 41637 0.061967749431460106 LPLPSQVGSRY 11 Unmodified _LPLPSQVGSRY_ 0 0 0 ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.8383178710938 2 608.837862 1215.66117 0.44058 0.00026824 0.69366 0.00042233 1.1342 0.00069057 608.8381479567219 48.554 0.33359 48.51 48.341 48.674 -0.04369 51 16 4 0 0 0 0.051143 2 26155 26155;26268 69.338 25.566 1 29432000 35395 12694 23568 24013 41638;41639 41638 0.061967749431460106 LPLPSQVGSRY 11 Unmodified _LPLPSQVGSRY_ 0 0 0 ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF ENST00000393094.6_1_11:107879697-107879871:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.838134765625 2 608.837862 1215.66117 0.75259 0.0004582 -0.059665 -3.6326E-05 0.69292 0.00042188 608.8375403484329 54.466 0.46916 48.6 48.366 48.835 -5.8653 87 28 4 0 0 0 0.018102 2 34470 34470;34612 71.708 47.732 1 176680000 35396 12694 23568 24013 41640;41641 41640 0.061967749431460106 LPLPSSSIL 9 Unmodified _LPLPSSSIL_ 0 0 0 ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R MSMS AL20221201_MKP_PDAC_01 4 463.7822570800781 2 463.781493 925.548434 NaN NaN NaN NaN NaN NaN NaN 86.271 1 80.095 79.595 80.595 -6.1757 0 0 0 0.029345 1 56868 56868 67.035 10.494 1 35397 4262 23569 24014 41642 41642 0.082681262171036 LPLPTIKDAY 10 Unmodified _LPLPTIKDAY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.82666015625 2 565.826432 1129.63831 0.0011497 6.5055E-07 1.0634 0.00060171 1.0646 0.00060236 565.8268782226074 61.401 0.21161 60.911 60.798 61.009 -0.48932 20 9 3 0 0 0 0.26936 1 33438 33438 33.445 9.4243 1 1700400 35398 5448 23570 24015 41643 41643 0.0786775582566861 LPLPTYYTLPN 11 Unmodified _LPLPTYYTLPN_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.351318359375 2 646.350271 1290.68599 0.75594 0.0004886 0.34717 0.0002244 1.1031 0.000713 646.3504885947259 73.798 0.87736 67.622 67.143 68.02 -6.1757 96 43 3 0 0 0 0.28407 1 48154 48154 27.629 1.3607 1 46262000 35399 1501 23571 24016 41644 41644 0.052274100258500766 LPLPVVQLL 9 Unmodified _LPLPVVQLL_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3320617675781 2 496.331153 990.647754 0.80748 0.00040078 0.9194 0.00045633 1.7269 0.0008571 496.3314939397932 101.65 0.10825 95.472 95.395 95.503 -6.1757 12 5 3 0 0 0 0.023761 1 68222 68222 59.795 8.9402 1 17202000 35400 663 23572 24017 41645 41645 0.15205568901853894 LPLQANVY 8 Unmodified _LPLQANVY_ 0 0 0 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MSMS AL20221201_MKP_PDAC_01 4 459.2584533691406 2 459.258185 916.501818 NaN NaN NaN NaN NaN NaN NaN 62.963 1 56.787 56.287 57.287 -6.1757 0 0 0 0.63034 1 40658 40658 32.117 7.4431 1 35401 2929 23573 24018 41646 41646 0.0402268638579244 LPLQDELAF 9 Unmodified _LPLQDELAF_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA;ENST00000400596.2_1_13:20134155-20134623:-|nuORF ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.281982421875 2 523.281857 1044.54916 0.44995 0.00023545 -0.3068 -0.00016054 0.14315 7.4908E-05 523.2817333232849 82.438 0.38515 82.438 82.225 82.61 0 39 15 3 0 0 0 0.047196 3 45767 45657;45668;45767 46.021 13.715 1 5664400 35402 8291 23574 24019 41647;41648;41649 41649 0.02866920866131295 LPLQDELAF 9 Unmodified _LPLQDELAF_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA;ENST00000400596.2_1_13:20134155-20134623:-|nuORF ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2821044921875 2 523.281857 1044.54916 0.44453 0.00023261 -0.88162 -0.00046133 -0.43709 -0.00022872 523.2812822672959 82.921 0.36884 82.423 82.244 82.613 -0.49751 38 15 3 0 0 0 0.16226 1 45469 45469 26.884 1.4843 1 3818500 35403 8291 23574 24019 41650 41650 0.02866920866131295 LPLQDELAF 9 Unmodified _LPLQDELAF_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA;ENST00000400596.2_1_13:20134155-20134623:-|nuORF ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2822875976562 2 523.281857 1044.54916 1.3798 0.00072201 -1.0801 -0.00056517 0.29973 0.00015684 523.2813598052828 90.775 0.53842 84.599 84.355 84.894 -6.1757 60 31 2 0 0 0 0.039985 1 59877 59877 49.933 11.959 1 24269000 35404 8291 23574 24019 41651 41651 0.02866920866131295 LPLQKYLS 8 Unmodified _LPLQKYLS_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2898559570312 2 481.289485 960.564418 0.20284 9.7625E-05 0.68044 0.00032749 0.88328 0.00042511 481.28968475803356 53.18 0.23836 53.116 52.981 53.219 -0.063423 26 11 3 0 0 0 0.36356 1 28815 28815 48.346 0.59716 1 3594600 + + 35405 16891 23575 24020 41652 41652 0.08255832453994572 LPLQKYLS 8 Unmodified _LPLQKYLS_ 0 0 0 REV__CON__Q9TTE1 REV__CON__Q9TTE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 481.289485 960.564418 0.20284 9.7625E-05 0.68044 0.00032749 0.88328 0.00042511 481.28968475803356 53.18 0.23836 53.116 52.981 53.219 -0.063423 0.0018368 0.00011881 NaN 48.346 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3594600 + + 35406 16891 23575 24020 0.08255832453994572 LPLQREPLY 9 Unmodified _LPLQREPLY_ 0 0 0 ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 ENSG00000064726|ENST00000261721|BTBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8243408203125 2 564.824224 1127.63389 0.78908 0.00044569 -0.4914 -0.00027755 0.29768 0.00016814 564.8239149525596 49.369 0.21803 48.977 48.839 49.057 -0.3923 14 10 2 0 0 0 0.033587 1 26540 26540 53.404 24.322 1 1859800 35407 884 23576 24021 41653 41653 0.07518291402766408 LPLQTVQRL 9 Unmodified _LPLQTVQRL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000566895.5_1_15:89821926-89825160:+|nuORF nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3324584960938 2 534.332216 1066.64988 -0.22402 -0.0001197 0.17865 9.546E-05 -0.045369 -2.4242E-05 534.3324412944581 51.39 0.293 51.336 51.147 51.44 -0.053871 27 14 3 0 0 0 0.020973 1 27819 27819 62.573 12.64 1 3023800 35408 5247 23577 24022 41654 41654 0.11921997639660731 LPLQTVQRL 9 Unmodified _LPLQTVQRL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;ENST00000566895.5_1_15:89821926-89825160:+|nuORF nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.3319091796875 2 534.332216 1066.64988 0.91199 0.00048731 0.33454 0.00017876 1.2465 0.00066606 534.3325078525808 57.329 0.26197 51.302 51.181 51.443 -6.0275 20 13 2 0 0 0 0.010611 1 36721 36721 78.728 16.155 1 14319000 35409 5247 23577 24022 41655 41655 0.11921997639660731 LPLRFDLQY 9 Unmodified _LPLRFDLQY_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8245239257812 2 582.824224 1163.63389 0.70742 0.0004123 -0.99792 -0.00058161 -0.29051 -0.00016931 582.8230941345313 73.605 0.44161 73.649 73.272 73.713 0.043983 55 19 5 0 0 0 0.016448 1 40497 40497 82.529 10.607 1 15073000 35410 5500 23578 24023 41656 41656 0.05862291402763731 LPLRFDLQY 9 Unmodified _LPLRFDLQY_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8241577148438 2 582.824224 1163.63389 1.0408 0.0006066 1.437 0.00083752 2.4778 0.0014441 582.8244814063297 88.885 0.6498 82.71 82.392 83.042 -6.1757 88 36 3 0 0 0 0.0084276 3 58651 58521;58651;58778 89.401 16.433 1 27241000 35411 5500 23578 24023 41657;41658;41659 41658 0.05862291402763731 LPLRGLRAL 9 Unmodified _LPLRGLRAL_ 0 0 0 ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3;ENST00000561356.1_1_15:102191577-102192564:-|nuORF ENST00000560910.5_1_15:102186874-102192564:-|nuORF ENST00000560910.5_1_15:102186874-102192564:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.8380432128906 2 504.837468 1007.66038 0.61667 0.00031132 0.42283 0.00021346 1.0395 0.00052478 504.8377554228922 58.745 0.23058 58.685 58.588 58.819 -0.060719 16 11 2 0 0 0 0.54444 1 32016 32016 4.756 0 1 1198000 35412 9239 23579 24024 41660 41660 0.15686025084755784 LPLRGPLL 8 Unmodified _LPLRGPLL_ 0 0 0 REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7942504882812 2 439.794738 877.574923 0.57227 0.00025168 -0.48176 -0.00021188 0.090511 3.9806E-05 439.79448300702967 70.046 0.40157 70.077 69.846 70.247 0.030914 38 20 2 0 0 0 0.50586 1 38480 38480 34.187 2.0704 1 7097500 + 35413 25538 23580 24025 41661 41661 0.13123859899098989 LPLRGPLL 8 Unmodified _LPLRGPLL_ 0 0 0 REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 439.794738 877.574923 0.57227 0.00025168 -0.48176 -0.00021188 0.090511 3.9806E-05 439.79448300702967 70.046 0.40157 70.077 69.846 70.247 0.030914 0 0 NaN 34.187 38 20 2 NaN NaN NaN NaN 0 NaN NaN 0 7097500 + 35414 25538 23580 24025 0.13123859899098989 LPLRHPHLY 9 Unmodified _LPLRHPHLY_ 0 0 0 REV__ENST00000245615.5_1_19:54692294-54692348:-|nuORF REV__ENST00000245615.5_1_19:54692294-54692348:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5580444335938 3 382.557459 1144.65055 0.75265 0.00028793 0.2374 9.082E-05 0.99005 0.00037875 382.55747428156957 38.641 0.37086 34.272 34.045 34.416 -4.3689 53 23 3 0 0 0 0.2324 1 22895 22895 20.415 4.2654 1 24803000 + 35415 24859 23581 24026 41662 41662 0.08400837079352641 LPLRIALAF 9 Unmodified _LPLRIALAF_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3291625976562 2 507.328945 1012.64334 0.94088 0.00047734 -0.063418 -3.2174E-05 0.87747 0.00044516 507.3289133368609 99.37 0.11487 93.194 93.128 93.243 -6.1757 13 7 2 0 0 0 0.0082281 1 66174 66174 92.822 7.4654 1 68652000 35416 6601 23582 24027 41663 41663 0.1375210447891959 LPLRPEAL 8 Unmodified _LPLRPEAL_ 0 0 0 REV__nc|ENSG00000115866|P14868-2|DARS1 REV__nc|ENSG00000115866|P14868-2|DARS1 MSMS AL20221201_MKP_PDAC_01 4 454.7814636230469 2 454.781828 907.549102 NaN NaN NaN NaN NaN NaN NaN 99.022 1 92.846 92.346 93.346 -6.1757 0 0 0 0.9249 1 65827 65827 15.768 5.5848 1 + 35417 19011 23583 24028 41664 41664 0.09162965656787492 LPLRRALAL 9 Unmodified _LPLRRALAL_ 0 0 0 REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF REV__ENST00000456638.2_1_10:75557246-75557327:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.845458984375 2 511.845294 1021.67603 0.76241 0.00039024 0.27343 0.00013995 1.0358 0.00053019 511.8454102868628 47.929 0.22393 47.89 47.722 47.946 -0.038647 17 10 2 0 0 0 0.54444 1 25827 25827 4.756 0 1 1493000 + 35418 27257 23584 24029 41665 41665 0.16606311601776724 LPLRRHHNYL 10 Unmodified _LPLRRHHNYL_ 0 0 0 nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2 nc|ENSG00000131480|O75106-2|AOC2 nc|ENSG00000131480|O75106-2|AOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2540588378906 3 440.254551 1317.74182 NaN NaN NaN NaN NaN NaN NaN 27.727 1 27.757 27.257 28.257 0.029564 0 0 0 0.24983 1 14417 14417 33.445 4.1638 1 35419 4332 23585 24030 41666 41666 0.09566100776714848 LPLRSKRAL 9 Unmodified _LPLRSKRAL_ 0 0 0 REV__ENSG00000198678|ENST00000328207|OR5BS1P REV__ENSG00000198678|ENST00000328207|OR5BS1P MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.901123046875 3 351.901226 1052.68185 0.64102 0.00022557 -0.58908 -0.0002073 0.051941 1.8278E-05 351.9015119937741 25.347 0.3881 22.464 22.289 22.677 -2.8831 51 22 3 0 0 0 0.34134 1 13815 13815 15.248 0 1 15505000 + 35420 24038 23586 24031 41667 41667 0.1576141011346408 LPLRVAEI 8 Unmodified _LPLRVAEI_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7895812988281 2 455.789653 909.564752 0.22048 0.00010049 0.27224 0.00012408 0.49272 0.00022458 455.7897262880079 57.985 0.24907 57.495 57.39 57.639 -0.48974 19 11 2 0 0 0 0.62219 1 31565 31565 24.021 0 1 1230500 35421 9440 23587 24032 41668 41668 0.1063525217384722 LPLRVAEI 8 Unmodified _LPLRVAEI_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 455.789653 909.564752 1.1457 0.00052219 0.78648 0.00035847 1.9322 0.00088067 455.7898516322225 63.614 0.25999 57.438 57.355 57.615 -6.1757 -0.028514 0.00032684 NaN 24.021 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 6265900 35422 9440 23587 24032 0.1063525217384722 LPLRVHTL 8 Unmodified _LPLRVHTL_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.8029479980469 2 474.803094 947.591636 0.6997 0.00033222 -0.33008 -0.00015672 0.36963 0.0001755 474.8027867292272 46.22 0.22707 46.187 46.059 46.286 -0.033417 15 10 2 0 0 0 0.060415 1 24867 24867 128.37 0 1 4408100 + 35423 18933 23588 24033 41669 41669 0.11574360785039062 LPLRVTEL 8 Unmodified _LPLRVTEL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.794677734375 2 470.794935 939.575317 0.32269 0.00015192 -0.15872 -7.4723E-05 0.16397 7.7198E-05 470.79483658316065 58.178 0.28616 57.688 57.533 57.819 -0.48974 22 13 3 0 0 0 0.48583 1 31605 31605 36.127 0 1 3123600 35424 9027 23589 24034 41670 41670 0.10311234828270699 LPLRVTEL 8 Unmodified _LPLRVTEL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 470.794935 939.575317 1.1219 0.0005282 -0.09195 -4.329E-05 1.03 0.00048491 470.79469010024695 63.833 0.26882 57.657 57.45 57.719 -6.1757 -0.015521 3.9873E-05 NaN 36.127 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 7705500 35425 9027 23589 24034 0.10311234828270699 LPLRVTLAF 9 Unmodified _LPLRVTLAF_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MSMS AL20221201_MKP_PDAC_01 4 515.3267211914062 2 515.326402 1028.63825 NaN NaN NaN NaN NaN NaN NaN 97.801 1 91.625 91.125 92.125 -6.1757 0 0 0 0.035688 1 64822 64822 63.961 12.331 1 35426 5087 23590 24035 41671 41671 0.1250780061632213 LPLRYAILM 9 Unmodified _LPLRYAILM_ 0 0 0 ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF ENST00000499077.2_2_3:131080852-131082214:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.3281860351562 2 545.328088 1088.64162 NaN NaN NaN NaN NaN NaN NaN 96.162 1 89.987 89.487 90.487 -6.1757 0 0 0 0.035065 1 63717 63717 64.236 0 1 35427 14432 23591 24036 41672 41672 0.10084727398657378 LPLSDARKLTF 11 Unmodified _LPLSDARKLTF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.9153747558594 3 420.915201 1259.72377 -0.21678 -9.1247E-05 0.64484 0.00027142 0.42806 0.00018018 420.9154177523492 53.468 0.21895 53.405 53.262 53.481 -0.063423 32 10 4 0 0 0 0.056311 1 28972 28972 53.798 29.834 1 13519000 35428 16412 23592 24037 41673 41673 0.10429921011291299 LPLSDARKLTF 11 Unmodified _LPLSDARKLTF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.869873046875 2 630.869163 1259.72377 NaN NaN NaN NaN NaN NaN NaN 53.497 1 53.434 52.934 53.934 -0.063423 0 0 0 0.17693 1 29015 29015 40.725 22.352 1 35429 16412 23592 24037 41674 41674 0.10429921011291299 LPLSFLLLRRF 11 Unmodified _LPLSFLLLRRF_ 0 0 0 REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF REV__ENST00000308527.5_1_15:75940532-75940874:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 687.9352416992188 2 687.93464 1373.85473 NaN NaN NaN NaN NaN NaN NaN 101.67 1 95.49 94.99 95.99 -6.1757 0 0 0 0.92234 1 68232 68232 6.2058 2.6093 1 + 35430 25400 23593 24038 41675 41675 0.1827535644999898 LPLSGSHLF 9 Unmodified _LPLSGSHLF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B;ENST00000558848.1_1_15:90760965-90763201:+|nuORF nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7718200683594 2 485.77146 969.528367 0.4522 0.00021966 0.095676 4.6477E-05 0.54787 0.00026614 485.7715731075935 61.87 0.27604 61.838 61.65 61.926 -0.032787 24 13 2 0 0 0 0.0081063 1 33762 33762 93.883 45.538 1 7335800 35431 9321 23594 24039 41676 41676 0.0423837527713431 LPLSHLVM 8 Oxidation (M) _LPLSHLVM(Oxidation (M))_ LPLSHLVM(1) LPLSHLVM(67) 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2628173828125 2 463.262413 924.510274 0.61666 0.00028568 0.9981 0.00046238 1.6148 0.00074806 463.26316994464094 50.73 0.36597 50.317 50.072 50.438 -0.41351 29 17 2 0 0 0 0.21786 1 27278 27278 67.035 40.694 1 2715500 35432 8367 23595 24040 41677 41677 1418 0.04499917030796041 LPLSHLVM 8 Oxidation (M) _LPLSHLVM(Oxidation (M))_ LPLSHLVM(1) LPLSHLVM(74) 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2630920410156 2 463.262413 924.510274 1.3565 0.00062843 0.49192 0.00022789 1.8485 0.00085632 463.26238255611486 50.306 0.40856 50.257 50.087 50.495 -0.048824 46 19 3 0 0 0 0.18881 2 27177 27177;27275 74.396 42.279 1 5940300 35433 8367 23595 24040 41678;41679 41678 1418 0.04499917030796041 LPLSHLVM 8 Unmodified _LPLSHLVM_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2651672363281 2 455.264956 908.515359 0.90479 0.00041192 0.13582 6.1835E-05 1.0406 0.00047375 455.2650896990278 68.577 0.40414 62.402 62.187 62.592 -6.1757 30 23 2 0 0 0 0.21786 1 44772 44772 67.035 34.918 1 13273000 35434 8367 23595 24041 41680 41680 0.05744220893404872 LPLSHLVMY 9 Oxidation (M) _LPLSHLVM(Oxidation (M))Y_ LPLSHLVM(1)Y LPLSHLVM(57)Y 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7945556640625 2 544.794078 1087.5736 -0.35774 -0.00019489 0.78529 0.00042782 0.42755 0.00023293 544.7942437185419 60.725 0.56774 60.236 59.907 60.475 -0.48932 107 27 6 0 0 0 0.026094 3 33063 32939;33063;33168 57.471 35.725 1 51478000 35435 8367 23596 24042 41681;41682;41683 41682 1418 0.03331857748025868 LPLSHLVMY 9 Oxidation (M) _LPLSHLVM(Oxidation (M))Y_ LPLSHLVM(1)Y LPLSHLVM(67)Y 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.79345703125 2 544.794078 1087.5736 0.31742 0.00017293 -0.82242 -0.00044805 -0.505 -0.00027512 544.7937944606513 60.298 0.90157 60.255 59.806 60.708 -0.04351 163 46 5 0 0 0 0.016184 4 32721 32721;32823;32924;33025 67.344 44.195 1 429930000 35436 8367 23596 24042 41684;41685;41686;41687 41684 1418 0.03331857748025868 LPLSHLVMY 9 Unmodified _LPLSHLVMY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7981567382812 2 536.79662 1071.57869 -0.21006 -0.00011276 -0.30051 -0.00016131 -0.51057 -0.00027407 536.7970517320913 69.678 0.29263 69.199 68.997 69.29 -0.47903 30 12 3 0 0 0 0.30562 1 38080 38080 16.942 7.5949 1 987170 35437 8367 23596 24043 41688 41688 0.045761616106574365 LPLSHLVMY 9 Unmodified _LPLSHLVMY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7969360351562 2 536.79662 1071.57869 0.5485 0.00029443 0.23678 0.0001271 0.78528 0.00042154 536.7968263635973 69.074 0.46684 69.105 68.866 69.333 0.030914 73 22 4 0 0 0 0.023164 2 38001 37894;38001 60.39 37.241 1 28548000 35438 8367 23596 24043 41689;41690 41690 0.045761616106574365 LPLSHLVMY 9 Unmodified _LPLSHLVMY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7969970703125 2 536.79662 1071.57869 1.0682 0.00057338 -1.0323 -0.00055414 0.035843 1.924E-05 536.7963717140408 89.55 1.4038 83.375 82.531 83.934 -6.1757 268 78 5 0 0 0 0.019303 6 58739 58621;58739;58869;58993;59115;59240 64.236 37.241 1 320880000 35439 8367 23596 24043 41691;41692;41693;41694;41695;41696 41692 0.045761616106574365 LPLSIEGHVHY 11 Unmodified _LPLSIEGHVHY_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2280578613281 3 422.227667 1263.66117 0.64899 0.00027402 0.60781 0.00025664 1.2568 0.00053066 422.22771894543047 49.43 0.19643 49.038 48.902 49.098 -0.3923 24 9 4 0 0 0 0.072475 1 26567 26567 46.022 28.974 1 3561400 35440 8479 23597 24044 41697 41697 0.0398877494315002 LPLSIKDDEY 10 Unmodified _LPLSIKDDEY_ 0 0 0 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8069458007812 2 596.808436 1191.60232 0.043308 2.5847E-05 -1.2306 -0.00073446 -1.1873 -0.00070862 596.8075460869176 50.357 0.42213 50.357 50.096 50.518 0 41 17 3 0 0 0 0.14944 1 27738 27738 45.74 0 1 10444000 35441 6895 23598 24045 41698 41698 0.014182538581508197 LPLSIKDDEY 10 Unmodified _LPLSIKDDEY_ 0 0 0 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.80908203125 2 596.808436 1191.60232 0.4333 0.0002586 0.79756 0.00047599 1.2309 0.00073459 596.8089275318798 57.133 0.21326 51.156 51.038 51.252 -5.9769 24 12 2 0 0 0 0.036856 2 36507 36441;36507 83.429 39.57 1 20652000 35442 6895 23598 24045 41699;41700 41700 0.014182538581508197 LPLSIPREIGF 11 Unmodified _LPLSIPREIGF_ 0 0 0 nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENSG00000103042|ENST00000219320|SLC38A7 nc|ENSG00000103042|Q9NVC3-2|SLC38A7 nc|ENSG00000103042|Q9NVC3-2|SLC38A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.3676147460938 2 621.366256 1240.71796 0.98502 0.00061206 0.093338 5.7997E-05 1.0784 0.00067005 621.3663595444859 97.07 0.20353 90.895 90.807 91.01 -6.1757 20 11 2 0 0 0 0.0011228 1 64368 64368 81.915 41.966 1 13206000 35443 2095 23599 24046 41701 41701 0.10722822499656104 LPLSIQEAY 9 Unmodified _LPLSIQEAY_ 0 0 0 ENSG00000182173|ENST00000333213|TSEN54;nc|ENSG00000182173|Q7Z6J9-2|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2822875976562 2 517.281857 1032.54916 0.21254 0.00010994 0.2847 0.00014727 0.49724 0.00025721 517.2818428319516 65.461 0.29964 65.461 65.272 65.572 0 21 11 2 0 0 0 0.013323 1 36487 36487 71.134 22.788 1 3336100 35444 9026 23600 24047 41702 41702 0.03418920866147346 LPLSIQEAY 9 Unmodified _LPLSIQEAY_ 0 0 0 ENSG00000182173|ENST00000333213|TSEN54;nc|ENSG00000182173|Q7Z6J9-2|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.281494140625 2 517.281857 1032.54916 -0.012316 -6.3709E-06 0.10098 5.2236E-05 0.088665 4.5865E-05 517.2818065240521 66 0.28201 65.516 65.385 65.667 -0.48394 20 12 2 0 0 0 0.070838 1 35999 35999 39.957 5.8549 1 3680200 35445 9026 23600 24047 41703 41703 0.03418920866147346 LPLSIQEAY 9 Unmodified _LPLSIQEAY_ 0 0 0 ENSG00000182173|ENST00000333213|TSEN54;nc|ENSG00000182173|Q7Z6J9-2|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 ENSG00000182173|ENST00000333213|TSEN54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2824096679688 2 517.281857 1032.54916 0.89981 0.00046545 -0.33292 -0.00017221 0.56689 0.00029324 517.2816793022034 72.671 0.47857 66.496 66.179 66.658 -6.1757 43 24 2 0 0 0 0.013323 1 47542 47542 71.134 16.36 1 20724000 35446 9026 23600 24047 41704 41704 0.03418920866147346 LPLSLIFDIY 10 Unmodified _LPLSLIFDIY_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.34521484375 2 597.344458 1192.67436 0.52017 0.00031072 1.1841 0.00070729 1.7042 0.001018 597.3450314127995 102.35 0.12497 96.174 96.093 96.218 -6.1757 32 8 5 0 0 0 0.021369 1 68687 68687 74.423 22.154 1 85017000 35447 3196 23601 24048 41705 41705 0.08573213002523516 LPLSLPLA 8 Unmodified _LPLSLPLA_ 0 0 0 REV__ENST00000474383.1_1_7:151534428-151573717:-|nuORF REV__ENST00000474383.1_1_7:151534428-151573717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 823.5289916992188 1 823.528767 822.521491 -1.0711 -0.00088207 0.99221 0.00081712 -0.07887 -6.4951E-05 823.5295642749254 78.145 0.27538 77.662 77.527 77.803 -0.4826 21 13 2 0 0 0 0.24182 1 42779 42779 63.394 0 1 1642700 + 35448 27563 23602 24049 41706 41706 0.10313062396573969 LPLSMAPPRAF 11 Unmodified _LPLSMAPPRAF_ 0 0 0 REV__ENSG00000173976|ENST00000555633|RAX2 REV__ENSG00000173976|ENST00000555633|RAX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5556945800781 3 400.55836 1198.65325 0.10724 4.2956E-05 -3.8198 -0.00153 -3.7125 -0.0014871 400.55692171761285 61.402 0.16259 61.369 61.293 61.456 -0.032787 12 7 2 0 0 0 0.56638 1 33524 33524 7.0371 0 1 5708100 + 35449 22761 23603 24050 41707 41707 0.06186924421990625 LPLSPQKKM 9 Unmodified _LPLSPQKKM_ 0 0 0 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.31201171875 2 521.309895 1040.60524 NaN NaN NaN NaN NaN NaN NaN 45.133 1 45.105 44.605 45.605 -0.028011 0 0 0 0.26667 1 24233 24233 26.884 7.4447 1 + 35450 29761 23604 24051 41708 41708 0.08655850501963869 LPLSQPSR 8 Unmodified _LPLSQPSR_ 0 0 0 ENST00000528443.6_1_1:179851420-179851525:+|nuORF ENST00000528443.6_1_1:179851420-179851525:+|nuORF ENST00000528443.6_1_1:179851420-179851525:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.26123046875 2 449.261259 896.507966 -0.23274 -0.00010456 0.20989 9.4297E-05 -0.022846 -1.0264E-05 449.2613835066004 32.424 0.33828 32.294 32.12 32.459 -0.12915 32 14 3 0 0 0 0.48669 1 16846 16846 36.044 0 1 14725000 35451 14857 23605 24052 41709 41709 0.05557204617332445 LPLSSAIY 8 Unmodified _LPLSSAIY_ 0 0 0 ENSG00000126903|ENST00000651600|SLC10A3;nc|ENSG00000126903|P09131-2|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 ENSG00000126903|ENST00000651600|SLC10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 863.486083984375 1 863.487296 862.48002 -0.24501 -0.00021156 1.2621 0.0010898 1.0171 0.00087826 863.4883172768195 63.595 0.17922 63.109 62.992 63.171 -0.48617 12 7 2 0 0 0 0.2655 1 34664 34664 59.795 25.608 1 837830 35452 3980 23606 24053 41710 41710 0.043278816372207984 LPLSSSHLNVY 11 Unmodified _LPLSSSHLNVY_ 0 0 0 ENSG00000112561|ENST00000373033|TFEB;nc|ENSG00000112561|P19484-2|TFEB ENSG00000112561|ENST00000373033|TFEB ENSG00000112561|ENST00000373033|TFEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.33154296875 2 615.32987 1228.64519 1.3398 0.00082443 -0.246 -0.00015137 1.0938 0.00067306 615.3300405141699 58.771 0.2171 52.696 52.618 52.835 -6.0745 15 11 2 0 0 0 0.0018376 1 37683 37683 80.676 42.5 1 7094400 35453 2899 23607 24054 41711 41711 0.04001068706247679 LPLSTCHHPL 10 Unmodified _LPLSTCHHPL_ 0 0 0 REV__ENST00000392717.6_1_2:165542339-165542447:-|nuORF REV__ENST00000392717.6_1_2:165542339-165542447:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.2920532226562 2 559.294776 1116.575 NaN NaN NaN NaN NaN NaN NaN 93.736 1 87.561 87.061 88.061 -6.1757 0 0 0 0.7417 1 62061 62061 14.838 0 1 + 35454 26397 23608 24055 41712 41712 0.021374918367655482 LPLSTPRQI 9 Unmodified _LPLSTPRQI_ 0 0 0 REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF REV__ENST00000514231.1_1_5:59092909-59284421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.810546875 2 512.811116 1023.60768 0.15092 7.7396E-05 -0.19468 -9.9833E-05 -0.043752 -2.2437E-05 512.8109934788315 54.102 0.35597 53.636 53.466 53.822 -0.46664 50 17 4 0 0 0 0.031062 1 29265 29265 54.774 2.5052 1 23871000 + 35455 28129 23609 24056 41713 41713 0.09682022231265819 LPLSTVGSVM 10 Oxidation (M) _LPLSTVGSVM(Oxidation (M))_ LPLSTVGSVM(1) LPLSTVGSVM(74) 0 0 1 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2757568359375 2 510.275718 1018.53688 0.076858 3.9219E-05 0.067616 3.4503E-05 0.14447 7.3721E-05 510.27564934035684 51.928 0.36419 51.495 51.285 51.649 -0.43367 39 18 3 0 0 0 0.021369 1 27991 27991 74.423 22.154 1 5558500 35456 1783;14116 23610 24057 41714 41714 301 0.028355611314623275 LPLSTVGSVM 10 Unmodified _LPLSTVGSVM_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000472057.1_1_22:29727525-29736761:-|nuORF;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1;ENST00000482818.1_1_22:29726183-29727937:-|nuORF nc|ENSG00000100280|Q10567-4|AP1B1 MSMS AL20221201_MKP_PDAC_01 4 502.2782897949219 2 502.27826 1002.54197 NaN NaN NaN NaN NaN NaN NaN 76.41 1 70.234 69.734 70.734 -6.1757 0 0 0 0.02494 1 49979 49979 85.357 27.885 1 35457 1783;14116 23610 24058 41715 41715 0.040798649940711584 LPLSVRRSTTY 11 Unmodified _LPLSVRRSTTY_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5824890136719 3 431.582221 1291.72483 NaN NaN NaN NaN NaN NaN NaN 33.01 1 33.039 32.539 33.539 0.029743 0 0 0 0.93669 1 17352 17352 4.1166 1.6181 1 35458 932 23611 24059 41716 41716 0.09064135380231164 LPLSYPHAS 9 Unmodified _LPLSYPHAS_ 0 0 0 REV__ENST00000370068.5_1_1:107683518-107690770:+|nuORF REV__ENST00000370068.5_1_1:107683518-107690770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7611389160156 2 492.761092 983.507631 0.16008 7.8881E-05 -0.62747 -0.00030919 -0.46739 -0.00023031 492.76081753383204 79.052 0.39946 79.052 78.829 79.229 0 40 18 3 0 0 0 0.54444 1 43850 43850 4.756 1.8668 1 914020 + 35459 26050 23612 24060 41717 41717 0.0152178489746575 LPLTALSFE 9 Unmodified _LPLTALSFE_ 0 0 0 REV__ENSG00000186190|ENST00000375494|BPIFB3 REV__ENSG00000186190|ENST00000375494|BPIFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 990.55615234375 1 990.550625 989.543348 0.89184 0.00088342 -0.71036 -0.00070365 0.18148 0.00017977 990.5503386193494 79.758 0.25996 79.268 79.117 79.377 -0.48933 19 11 2 0 0 0 0.12841 1 43641 43641 30.225 5.5509 1 1294200 + 35460 23558 23613 24061 41718 41718 0.04815822354487409 LPLTALSFE 9 Unmodified _LPLTALSFE_ 0 0 0 REV__ENSG00000186190|ENST00000375494|BPIFB3 REV__ENSG00000186190|ENST00000375494|BPIFB3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 990.550625 989.543348 0.89184 0.00088342 -0.71036 -0.00070365 0.18148 0.00017977 990.5503386193494 79.758 0.25996 79.268 79.117 79.377 -0.48933 0 0 NaN 30.225 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1294200 + 35461 23558 23613 24061 0.04815822354487409 LPLTARWEY 9 Unmodified _LPLTARWEY_ 0 0 0 ENSG00000080819|ENST00000647941|CPOX ENSG00000080819|ENST00000647941|CPOX ENSG00000080819|ENST00000647941|CPOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8089599609375 2 574.808574 1147.60259 0.41026 0.00023582 0.8669 0.0004983 1.2772 0.00073412 574.80905922333 60.968 0.29907 60.925 60.765 61.064 -0.04351 30 14 3 0 0 0 0.05483 1 33268 33268 43.772 0 1 4424900 35462 1306 23614 24062 41719 41719 0.03469718368660324 LPLTDKARM 9 Oxidation (M) _LPLTDKARM(Oxidation (M))_ LPLTDKARM(1) LPLTDKARM(44) 0 0 1 ENSG00000172992|ENST00000651974|DCAKD ENSG00000172992|ENST00000651974|DCAKD ENSG00000172992|ENST00000651974|DCAKD MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2002258300781 3 354.198831 1059.57467 0.93097 0.00032975 0.26583 9.4157E-05 1.1968 0.0004239 354.19936182153174 24.633 0.36208 21.75 21.559 21.921 -2.8831 56 19 4 0 0 0 0.053952 1 13351 13351 43.982 17.961 1 12067000 35463 8278 23615 24063 41720 41720 1397 0.04726072116909563 LPLTEIIRHY 10 Unmodified _LPLTEIIRHY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.9113159179688 3 418.911679 1253.71321 0.39049 0.00016358 -0.26245 -0.00010995 0.12803 5.3635E-05 419.2459059069778 61.946 0.43343 61.459 61.182 61.615 -0.48764 35 20 2 0 0 0 0.1899 1 33683 33683 42.835 30.608 1 2915300 35464 8006 23616 24064 41721 41721 0.096499383569153 LPLTEIIRHY 10 Unmodified _LPLTEIIRHY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.9114685058594 3 418.911679 1253.71321 0.20712 8.6766E-05 0.28907 0.0001211 0.4962 0.00020786 418.91183731552815 61.493 0.63588 61.46 61.136 61.772 -0.032787 80 31 4 0 0 0 0.095786 2 33492 33492;33597 41.347 18.331 1 15112000 35465 8006 23616 24064 41722;41723 41722 0.096499383569153 LPLTEIIRHY 10 Unmodified _LPLTEIIRHY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.9121704101562 3 418.911679 1253.71321 1.3775 0.00057705 -0.34935 -0.00014635 1.0282 0.00043071 418.9115535353906 86.131 0.80527 79.956 79.424 80.23 -6.1757 94 44 3 0 0 0 0.095786 3 56725 56580;56725;56864 48.073 25.057 1 43409000 35466 8006 23616 24064 41724;41725;41726 41725 0.096499383569153 LPLTHFELY 9 Unmodified _LPLTHFELY_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;PSMC4|p.K192R|1|0.16|ENSG00000013275|chr19:39974629-39974629|A/G|missense_variant nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8060913085938 2 566.8055 1131.59645 0.55859 0.00031661 0.65123 0.00036912 1.2098 0.00068573 566.8059034602413 72.894 0.24863 72.894 72.779 73.028 0 20 11 2 0 0 0 0.14 1 40566 40566 24.674 2.9272 1 1484900 35467 468 23617 24065 41727 41727 0.03591200137134365 LPLTHFELY 9 Unmodified _LPLTHFELY_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;PSMC4|p.K192R|1|0.16|ENSG00000013275|chr19:39974629-39974629|A/G|missense_variant nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.804931640625 2 566.8055 1131.59645 0.85058 0.00048211 -0.58825 -0.00033342 0.26233 0.00014869 566.8050953051234 73.291 0.48544 72.815 72.606 73.092 -0.47588 72 21 4 0 0 0 0.017075 2 40050 40050;40147 74.423 23.568 1 67447000 35468 468 23617 24065 41728;41729 41728 0.03591200137134365 LPLTHFELY 9 Unmodified _LPLTHFELY_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;PSMC4|p.K192R|1|0.16|ENSG00000013275|chr19:39974629-39974629|A/G|missense_variant nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8052978515625 2 566.8055 1131.59645 0.30517 0.00017297 -0.18612 -0.00010549 0.11905 6.7478E-05 566.8053591098619 72.709 0.46178 72.751 72.527 72.989 0.041733 74 21 4 0 0 0 0.017075 2 39975 39975;40079 64.236 13.381 1 80465000 35469 468 23617 24065 41730;41731 41730 0.03591200137134365 LPLTHFELY 9 Unmodified _LPLTHFELY_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;PSMC4|p.K192R|1|0.16|ENSG00000013275|chr19:39974629-39974629|A/G|missense_variant nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8059692382812 2 566.8055 1131.59645 1.317 0.00074647 -0.28433 -0.00016116 1.0326 0.00058531 566.8053335362666 90.543 1.0257 84.367 83.868 84.894 -6.1757 183 60 4 0 0 0 0.012668 4 60089 59693;59826;59957;60089 71.134 33.16 1 235020000 35470 468 23617 24065 41732;41733;41734;41735 41735 0.03591200137134365 LPLTHPEY 8 Unmodified _LPLTHPEY_ 0 0 0 nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000396338.3_1_12:18845807-18846413:+|nuORF nc|ENSG00000100764|P62191-2|PSMC1 nc|ENSG00000100764|P62191-2|PSMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2560119628906 2 485.255643 968.496732 0.46741 0.00022681 0.31715 0.0001539 0.78455 0.00038071 485.25549419636206 39.134 0.25381 39.134 38.99 39.244 0 20 11 2 0 0 0 0.37649 1 20966 20966 46.921 25.174 1 2289700 35471 1873 23618 24066 41736 41736 0.011223825231695628 LPLTRNKVI 9 Unmodified _LPLTRNKVI_ 0 0 0 REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8982238769531 3 351.897481 1052.67061 0.22668 7.9769E-05 0.72044 0.00025352 0.94712 0.00033329 351.8977814713411 49.125 0.24909 49.082 48.946 49.195 -0.04369 18 11 2 0 0 0 0.25681 1 26521 26521 18.373 0 1 1675100 + 35472 28817 23619 24067 41737 41737 0.1463858801932929 LPLTSHIL 8 Unmodified _LPLTSHIL_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.2765197753906 2 447.276378 892.538203 0.20999 9.3924E-05 -0.32496 -0.00014535 -0.11497 -5.1424E-05 447.2764019440375 58.737 0.21781 58.246 58.111 58.329 -0.49079 17 10 2 0 0 0 0.5284 1 31948 31948 32.117 7.4431 1 2097600 35473 2410 23620 24068 41738 41738 0.08763563282514042 LPLTSHIL 8 Unmodified _LPLTSHIL_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 446.8936157226562 2 447.276378 892.538203 1.5716 0.00070292 -0.27781 -0.00012426 1.2938 0.00057867 447.27629078005737 64.459 0.35925 58.284 58.053 58.412 -6.1757 25 19 2 0 0 0 8.7369 1 41638 41638 40.449 0 1 15478000 35474 2410 23620 24068 41739 41739 0.08763563282514042 LPLTSHIL 8 Unmodified _LPLTSHIL_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 447.276378 892.538203 1.0484 0.00046894 -0.65189 -0.00029158 0.39654 0.00017736 447.27591743993173 58.351 0.23864 58.291 58.156 58.394 -0.060719 0.017126 -0.00021133 NaN 32.117 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2117800 35475 2410 23620 24068 0.08763563282514042 LPLTSKGSL 9 Unmodified _LPLTSKGSL_ 0 0 0 ENST00000261489.6_2_13:45008381-45008570:-|nuORF ENST00000261489.6_2_13:45008381-45008570:-|nuORF ENST00000261489.6_2_13:45008381-45008570:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2784729003906 2 458.279118 914.543683 0.55004 0.00025207 -1.1654 -0.00053409 -0.61538 -0.00028202 458.27816027493583 39.753 0.24599 39.758 39.627 39.873 0.0050545 14 11 2 0 0 0 0.094149 1 21200 21200 34.402 0 1 1381900 35476 11244 23621 24069 41740 41740 0.08299242074338053 LPLVESMLLWT 11 Unmodified _LPLVESMLLWT_ 0 0 0 REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3641357421875 2 651.362324 1300.7101 -0.031039 -2.0217E-05 2.1768 0.0014179 2.1458 0.0013977 651.3635720011149 65.801 0.21526 65.317 65.195 65.41 -0.48428 14 8 2 0 0 0 0.50515 1 35910 35910 16.149 5.3496 1 2360200 + 35477 21539 23622 24070 41741 41741 0.07176927187856563 LPLVESMLLWT 11 Unmodified _LPLVESMLLWT_ 0 0 0 REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.364013671875 2 651.362324 1300.7101 0.93455 0.00060873 1.9579 0.0012753 2.8924 0.001884 651.363769198048 65.288 0.31023 65.288 65.077 65.387 7.6294E-06 32 14 3 0 0 0 0.30985 1 35766 35766 26.268 3.6101 1 11108000 + 35478 21539 23622 24070 41742 41742 0.07176927187856563 LPLVESMLLWT 11 Unmodified _LPLVESMLLWT_ 0 0 0 REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 651.362324 1300.7101 -0.031039 -2.0217E-05 2.1768 0.0014179 2.1458 0.0013977 651.3635720011149 65.801 0.21526 65.317 65.195 65.41 -0.48428 0.014381 0.00014517 NaN 26.268 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2360200 + 35479 21539 23622 24070 0.07176927187856563 LPLVESMLLWT 11 Unmodified _LPLVESMLLWT_ 0 0 0 REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF REV__ENST00000485978.1_1_9:136337145-136339092:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 651.362324 1300.7101 0.93455 0.00060873 1.9579 0.0012753 2.8924 0.001884 651.363769198048 65.288 0.31023 65.288 65.077 65.387 7.6294E-06 -0.014381 -0.00014003 NaN 26.268 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11108000 + 35480 21539 23622 24070 0.07176927187856563 LPLVGSSNSHP 11 Unmodified _LPLVGSSNSHP_ 0 0 0 REV__nc|ENSG00000130695|Q6P2H3-4|CEP85 REV__nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2932739257812 2 554.293288 1106.57202 0.76026 0.00042141 -0.77706 -0.00043072 -0.016795 -9.3093E-06 554.2925330847955 48.029 0.2555 47.677 47.535 47.79 -0.3526 34 12 4 0 0 0 0.088819 2 25723 25723;25827 43.772 3.8151 1 25020000 + 35481 19733 23623 24071 41743;41744 41743 0.0229993998361806 LPLVPSPRTS 10 Unmodified _LPLVPSPRTS_ 0 0 0 REV__ENST00000564976.5_1_16:70218720-70220427:+|nuORF REV__ENST00000564976.5_1_16:70218720-70220427:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.817138671875 2 533.816399 1065.61824 0.42906 0.00022904 -0.20054 -0.00010705 0.22852 0.00012199 533.8164434365689 52.061 0.35524 51.627 51.474 51.83 -0.43367 45 17 4 0 0 0 0.32072 1 28198 28198 26.268 0.86883 1 10549000 + 35482 28902 23624 24072 41745 41745 0.08806004885695984 LPLVSSTY 8 Unmodified _LPLVSSTY_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 879.4807739257812 1 879.482211 878.474934 -0.32817 -0.00028862 0.68236 0.00060013 0.35419 0.00031151 879.4824254205637 58.139 0.2674 57.649 57.492 57.76 -0.48974 20 12 2 0 0 0 0.35156 1 31572 31572 49.669 9.2203 1 2513400 35483 5887 23625 24073 41746 41746 0.03083577774623336 LPLVSSTY 8 Unmodified _LPLVSSTY_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 879.4822998046875 1 879.482211 878.474934 0.54816 0.0004821 0.25403 0.00022342 0.80219 0.00070551 879.482537251337 65.99 0.36298 59.814 59.576 59.939 -6.1757 24 20 2 0 0 0 0.17994 1 42876 42876 77.984 7.2688 1 12092000 35484 5887 23625 24073 41747 41747 0.03083577774623336 LPLWERSALD 10 Unmodified _LPLWERSALD_ 0 0 0 REV__ENSG00000088812|ENST00000262919|ATRN REV__ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5526428222656 3 400.552151 1198.63462 0.56002 0.00022432 0.35291 0.00014136 0.91293 0.00036567 400.5524165456349 40.798 0.24516 40.495 40.337 40.582 -0.30304 23 11 3 0 0 0 0.36296 1 21572 21572 16.275 1.3174 1 2713300 + 35485 17811 23626 24074 41748 41748 0.043250860517900946 LPLWLHTLHGV 11 Unmodified _LPLWLHTLHGV_ 0 0 0 REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF REV__ENST00000416675.5_1_7:100450451-100456466:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 643.2188720703125 2 643.374415 1284.73428 NaN NaN NaN NaN NaN NaN NaN 76.014 1 69.838 69.338 70.338 -6.1757 0 0 0 0.67846 1 49724 49724 22.736 5.6234 1 + 35486 26776 23627 24075 41749 41749 0.10329948456387683 LPLWMHSL 8 Unmodified _LPLWMHSL_ 0 0 0 REV__ENST00000472823.5_1_6:29570561-29570969:-|nuORF REV__ENST00000472823.5_1_6:29570561-29570969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7722473144531 2 498.770406 995.526258 0.40525 0.00020213 -2.2555 -0.001125 -1.8503 -0.00092287 498.7695125112997 63.885 0.52544 63.4 63.213 63.739 -0.48512 49 27 2 0 0 0 0.71616 1 35000 35000 15.768 2.2603 1 4951400 + 35487 27526 23628 24076 41750 41750 0.02831623267672967 LPLWNDGCIM 10 Carbamidomethyl (C),Oxidation (M) _LPLWNDGC(Carbamidomethyl (C))IM(Oxidation (M))_ LPLWNDGC(1)IM LPLWNDGCIM(1) LPLWNDGC(63)IM LPLWNDGCIM(63) 0 1 1 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.7857666015625 2 617.783384 1233.55222 1.2587 0.0007776 0.36948 0.00022826 1.6282 0.0010059 618.2849943247969 79.343 0.42435 73.168 72.911 73.335 -6.1757 37 23 2 0 0 0 0.041224 1 51891 51891 62.573 31.936 1 18750000 35488 3121 23629 24077 41751 41751 324 550 -0.055218953430085094 LPLWNDGCIM 10 Carbamidomethyl (C) _LPLWNDGC(Carbamidomethyl (C))IM_ LPLWNDGC(1)IM LPLWNDGC(82)IM 0 1 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.7861328125 2 609.785927 1217.5573 1.174 0.00071587 -0.016847 -1.0273E-05 1.1571 0.0007056 609.785701903016 96.667 0.72275 90.491 90.084 90.807 -6.1757 73 42 2 0 0 0 0.013171 2 64037 64037;64161 81.89 41.933 1 13416000 35489 3121 23629 24078 41752;41753 41752 324 -0.04277591480422416 LPLWQHISF 9 Unmodified _LPLWQHISF_ 0 0 0 ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112;nc|ENSG00000000460|Q9NSG2-3|FIRRM ENST00000498289.5_1_1:169773308-169819597:+|nuORF ENST00000498289.5_1_1:169773308-169819597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8160400390625 2 570.813659 1139.61277 1.356 0.00077404 2.22 0.0012672 3.5761 0.0020413 570.8146033701456 81.363 0.39841 81.423 81.237 81.636 0.059929 22 14 2 0 0 0 0.037253 1 45016 45016 47.749 15.632 1 2137700 35490 251 23630 24079 41754 41754 0.04854326093891359 LPLWQHISF 9 Unmodified _LPLWQHISF_ 0 0 0 ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112;nc|ENSG00000000460|Q9NSG2-3|FIRRM ENST00000498289.5_1_1:169773308-169819597:+|nuORF ENST00000498289.5_1_1:169773308-169819597:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8142700195312 2 570.813659 1139.61277 1.5761 0.00089967 -0.3633 -0.00020738 1.2128 0.00069229 570.8134528203102 97.512 0.34132 91.336 91.08 91.421 -6.1757 33 18 3 0 0 0 0.060956 1 64670 64670 38.176 13.502 1 26962000 35491 251 23630 24079 41755 41755 0.04854326093891359 LPLWRYQELRI 11 Unmodified _LPLWRYQELRI_ 0 0 0 ENSG00000167612|ENST00000301190|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.9302368164062 2 743.930086 1485.84562 NaN NaN NaN NaN NaN NaN NaN 91.368 1 91.404 90.904 91.904 0.036499 0 0 0 0.94301 1 50822 50822 0.35063 0.043601 1 35492 7637 23631 24080 41756 41756 0.12212963093702456 LPLWWKTTETY 11 Unmodified _LPLWWKTTETY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;ENST00000577594.5_1_17:26890803-26898514:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 719.3766479492188 2 719.374278 1436.734 0.42946 0.00030894 0.82976 0.00059691 1.2592 0.00090585 719.8763839727582 74.214 0.42419 74.258 74.096 74.52 0.043983 34 18 2 0 0 0 0.0033762 2 40887 40887;40987 78.06 66.566 1 6298400 35493 1454 23632 24081 41757;41758 41757 0.033104839458928836 LPLWWKTTETY 11 Unmodified _LPLWWKTTETY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;ENST00000577594.5_1_17:26890803-26898514:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 719.375244140625 2 719.374278 1436.734 0.58974 0.00042424 0.51253 0.0003687 1.1023 0.00079294 719.3744899976992 91.263 0.61625 85.087 84.755 85.371 -6.1757 82 34 3 0 0 0 5.665699999999999E-21 3 60317 60192;60317;60453 150.62 119.92 1 17212000 35494 1454 23632 24081 41759;41760;41761 41760 0.033104839458928836 LPLYDFLDT 9 Unmodified _LPLYDFLDT_ 0 0 0 REV__nc|ENSG00000113575|P67775-2|PPP2CA REV__nc|ENSG00000113575|P67775-2|PPP2CA MSMS AL20221201_MKP_PDAC_01 4 365.86279296875 3 366.190219 1095.54883 NaN NaN NaN NaN NaN NaN NaN 23.276 1 20.498 19.998 20.998 -2.7784 0 0 0 0.6032 1 12590 12590 12.241 6.9438 1 + 35495 18366 23633 24082 41762 41762 0.004875011462672774 LPLYEVLLF 9 Unmodified _LPLYEVLLF_ 0 0 0 REV__ENST00000400514.2_1_18:12658645-12658831:+|nuORF REV__ENST00000400514.2_1_18:12658645-12658831:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2801513671875 2 553.828443 1105.64233 0.84224 0.00046645 -3.7239 -0.0020624 -2.8817 -0.0015959 553.8262329250983 47.854 0.14982 47.854 47.81 47.959 0 10 6 2 0 0 0 0.21242 1 26228 26228 2.3027 0 1 733960 + 35496 26597 23634 24083 41763 41763 0.09373845319350949 LPLYPLLF 8 Unmodified _LPLYPLLF_ 0 0 0 ENST00000333319.6_1_7:156432277-156432460:-|nuORF ENST00000333319.6_1_7:156432277-156432460:-|nuORF ENST00000333319.6_1_7:156432277-156432460:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2982177734375 2 488.299322 974.584091 NaN NaN NaN NaN NaN NaN NaN 69.344 1 69.375 68.875 69.875 0.030914 0 0 0 0.48318 1 38114 38114 41.817 1.578 1 35497 11879 23635 24084 41764 41764 0.0957820846474533 LPLYPTDSFI 10 Unmodified _LPLYPTDSFI_ 0 0 0 REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.3123779296875 2 583.310615 1164.60668 0.22739 0.00013264 3.0313 0.0017682 3.2586 0.0019008 583.3121774834365 69.374 0.19807 69.374 69.269 69.467 0 14 8 2 0 0 0 0.39779 1 38657 38657 21.747 5.8995 1 953290 + 35498 21344 23636 24085 41765 41765 0.030957630717011853 LPLYPTDSFI 10 Unmodified _LPLYPTDSFI_ 0 0 0 REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.310615 1164.60668 0.22739 0.00013264 3.0313 0.0017682 3.2586 0.0019008 583.3121774834365 69.374 0.19807 69.374 69.269 69.467 0 0 0 NaN 21.747 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 953290 + 35499 21344 23636 24085 0.030957630717011853 LPLYSKRY 8 Unmodified _LPLYSKRY_ 0 0 0 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 ENSG00000125910|ENST00000246115|S1PR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3021240234375 2 520.300384 1038.58622 1.0591 0.00055103 0.72862 0.0003791 1.7877 0.00093014 520.3018354927094 70.514 0.84344 64.339 63.862 64.705 -6.1757 161 46 5 0 0 0 0.48669 1 46078 46078 36.044 3.7387 1 151770000 35500 3908 23637 24086 41766 41766 0.06846637202556849 LPLYSVLASL 10 Unmodified _LPLYSVLASL_ 0 0 0 REV__ENSG00000188822|ENST00000374472|CNR2 REV__ENSG00000188822|ENST00000374472|CNR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3228759765625 2 538.323525 1074.6325 0.26864 0.00014461 0.60525 0.00032582 0.87389 0.00047043 538.3236783298036 76.003 0.69728 75.524 75.187 75.885 -0.47945 85 29 4 0 0 0 0.46077 2 41592 41485;41592 28.487 4.4107 1 2772600 + 35501 23735 23638 24087 41767;41768 41768 0.09816657313990618 LPLYVCPVY 9 Unmodified _LPLYVCPVY_ 0 0 0 nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2;ENST00000554377.1_1_14:50116973-50120958:-|nuORF;ENST00000554851.5_1_14:50110352-50118040:-|nuORF nc|ENSG00000100479|P56282-2|POLE2 nc|ENSG00000100479|P56282-2|POLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7853393554688 2 533.785721 1065.55689 0.31208 0.00016658 4.1011 0.0021891 4.4131 0.0023557 533.7864517186024 54.997 0.33448 54.929 54.783 55.117 -0.068737 51 16 4 0 0 0 0.22317 1 29950 29950 20.871 3.9289 1 12366000 35502 1833 23639 24088 41769 41769 0.02673356862055698 LPMAMRFRHL 10 Unmodified _LPMAMRFRHL_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.218505859375 3 424.566972 1270.67909 -0.44184 -0.00018759 -0.78543 -0.00033347 -1.2273 -0.00052106 424.5665081379609 29.579 0.12755 29.579 29.555 29.682 0 14 9 2 0 0 0 0.23767 1 15327 15327 6.1918 1.2948 1 3407800 35503 10887 23640 24089 41770 41770 0.054574953926476155 LPMDLRDRF 9 Unmodified _LPMDLRDRF_ 0 0 0 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-2|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.540771484375 3 388.206098 1161.59646 0.92417 0.00035877 -0.36123 -0.00014023 0.56294 0.00021854 388.5400556273922 56.874 0.3537 50.897 50.719 51.073 -5.9769 29 20 2 0 0 0 0.07087 1 36271 36271 30.703 19.186 1 17284000 35504 1055;16047 23641 24090 41771 41771 0.022128768654965825 LPMDQFAVH 9 Unmodified _LPMDQFAVH_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2627563476562 2 529.260402 1056.50625 NaN NaN NaN NaN NaN NaN NaN 17.281 1 17.281 16.781 17.781 0 0 0 0 0.84564 1 8502 8502 2.0598 1.2661 1 35505 16284 23642 24091 41772 41772 -0.019741724629511737 LPMEAGLVEF 10 Unmodified _LPMEAGLVEF_ 0 0 0 nc|ENSG00000087253|Q7L5N7-2|LPCAT2;ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566375.1_1_16:55583234-55585020:+|nuORF nc|ENSG00000087253|Q7L5N7-2|LPCAT2 nc|ENSG00000087253|Q7L5N7-2|LPCAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2838745117188 2 553.283543 1104.55253 1.3406 0.00074171 -0.18428 -0.00010196 1.1563 0.00063975 553.2830778122793 95.588 0.91286 89.412 88.872 89.785 -6.1757 88 53 2 0 0 0 0.46514 2 63069 63069;63194 18.146 4.0704 1 19324000 35506 1461 23643 24092 41773;41774 41773 0.004438476484892817 LPMEDLHASE 10 Unmodified _LPMEDLHASE_ 0 0 0 REV__ENST00000590271.5_1_18:76847676-76954399:+|nuORF REV__ENST00000590271.5_1_18:76847676-76954399:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2608032226562 2 571.263339 1140.51212 0.36152 0.00020653 -0.56942 -0.00032529 -0.2079 -0.00011876 571.2625227241657 52.627 0.17638 52.627 52.552 52.728 0 12 7 2 0 0 0 0.60623 1 29131 29131 10.824 1.4408 1 2693600 + 35507 22112 23644 24093 41775 41775 -0.052511187419213456 LPMEEYDSGY 10 Unmodified _LPMEEYDSGY_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.248779296875 2 602.247354 1202.48016 -0.080549 -4.851E-05 1.3484 0.00081206 1.2678 0.00076355 602.2482073226765 77.986 0.33257 77.986 77.794 78.127 0 34 14 3 0 0 0 0.72044 1 43393 43393 1.4819 0.8804 1 2416800 + 35508 20835 23645 24094 41776 41776 -0.11298531215720686 LPMEQHGPLQF 11 Unmodified _LPMEQHGPLQF_ 0 0 0 REV__ENSG00000198169|ENST00000292562|ZNF251 REV__ENSG00000198169|ENST00000292562|ZNF251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8847045898438 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 51.529 1 51.115 50.615 51.615 -0.41351 0 0 0 0.93923 1 27788 27788 3.0723 0.44103 1 + 35509 23996 23646 24095 41777 41777 -0.0027487130862482445 LPMFFELQFM 10 Unmodified _LPMFFELQFM_ 0 0 0 REV__ENSG00000196917|ENST00000432564|HCAR1 REV__ENSG00000196917|ENST00000432564|HCAR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8833312988281 3 434.880222 1301.61884 NaN NaN NaN NaN NaN NaN NaN 100.12 1 100.09 99.586 100.59 -0.036301 0 0 0 0.98914 1 55609 55609 0.77653 0.32202 1 + 35510 23881 23647 24096 41778 41778 -0.019906597811313986 LPMFYLLLL 9 Unmodified _LPMFYLLLL_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8011474609375 2 561.835214 1121.65588 0.9763 0.00054852 2.3117 0.0012988 3.288 0.0018473 561.8363935803183 47.689 0.22273 47.65 47.561 47.783 -0.038643 26 10 3 0 0 0 0.16418 1 25727 25727 14.582 3.7578 1 9472900 + 35511 19183 23648 24097 41779 41779 0.09991379826965385 LPMGVVVDY 9 Oxidation (M) _LPM(Oxidation (M))GVVVDY_ LPM(1)GVVVDY LPM(40)GVVVDY 0 0 1 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7575073242188 2 504.757161 1007.49977 0.77824 0.00039282 -0.84066 -0.00042433 -0.062418 -3.1506E-05 504.7566475051708 57.606 0.57682 57.606 57.177 57.754 0 50 27 3 0 0 0 0.068777 1 32049 32049 40.449 22.314 1 17786000 35512 16175 23649 24098 41780 41780 1801 -0.0036811041430837577 LPMGVVVDY 9 Oxidation (M) _LPM(Oxidation (M))GVVVDY_ LPM(1)GVVVDY LPM(40)GVVVDY 0 0 1 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.757568359375 2 504.757161 1007.49977 -0.16939 -8.5502E-05 1.9874 0.0010031 1.818 0.00091764 504.75847953822307 58.223 0.83738 57.733 57.492 58.33 -0.48974 54 40 2 0 0 0 0.068777 1 31688 31688 40.449 17.3 1 7634500 35513 16175 23649 24098 41781 41781 1801 -0.0036811041430837577 LPMGVVVDY 9 Oxidation (M) _LPM(Oxidation (M))GVVVDY_ LPM(1)GVVVDY LPM(40)GVVVDY 0 0 1 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7586975097656 2 504.757161 1007.49977 0.2822 0.00014244 1.2171 0.00061433 1.4993 0.00075677 504.7579041584977 65.394 0.62801 59.218 59 59.628 -6.1757 70 35 3 0 0 0 0.068777 1 42544 42544 40.449 26.941 1 33525000 35514 16175 23649 24098 41782 41782 1801 -0.0036811041430837577 LPMGVVVDY 9 Unmodified _LPMGVVVDY_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5128784179688 1 992.512131 991.504854 1.2208 0.0012116 1.2418 0.0012325 2.4625 0.0024441 992.5133106960748 79.642 0.45762 73.467 73.202 73.659 -6.1757 48 27 2 0 0 0 0.016494 3 52237 52043;52102;52237 67.035 40.694 1 23428000 35515 16175 23649 24099 41783;41784;41785 41785 0.008761934483004552 LPMGVVVDY 9 Unmodified _LPMGVVVDY_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MSMS AL20221201_MKP_PDAC_01 4 496.7618408203125 2 496.759704 991.504854 NaN NaN NaN NaN NaN NaN NaN 79.669 1 73.493 72.993 73.993 -6.1757 0 0 0 0.029345 1 52224 52224 67.035 36.811 1 35516 16175 23649 24099 41786 41786 0.008761934483004552 LPMGVVVDY 9 Unmodified _LPMGVVVDY_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MSMS AL20221201_MKP_PDAC_01 4 496.7567443847656 2 496.759704 991.504854 NaN NaN NaN NaN NaN NaN NaN 79.723 1 73.548 73.048 74.048 -6.1757 0 0 0 0.18911 1 52264 52264 32.117 7.4431 1 35517 16175 23649 24099 41787 41787 0.008761934483004552 LPMINNVMY 9 2 Oxidation (M) _LPM(Oxidation (M))INNVM(Oxidation (M))Y_ LPM(1)INNVM(1)Y LPM(47)INNVM(47)Y 0 0 2 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7667846679688 2 563.767203 1125.51985 -0.013657 -7.6995E-06 -1.5945 -0.00089893 -1.6082 -0.00090663 563.767044466649 55.879 0.27914 55.401 55.259 55.538 -0.47798 32 13 3 0 0 0 0.045537 1 30336 30336 46.921 26.05 1 4057600 35518 1262 23650 24100 41788 41788 209;210 -0.03788682745994265 LPMINNVMY 9 Oxidation (M) _LPMINNVM(Oxidation (M))Y_ LPMINNVM(1)Y LPM(-42)INNVM(42)Y 0 0 1 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7692260742188 2 555.769745 1109.52494 1.2232 0.00067982 -0.368 -0.00020452 0.85521 0.0004753 555.7693025514683 71.582 0.27928 65.406 65.222 65.502 -6.1757 18 13 2 0 0 0 0.052168 1 46818 46818 44.407 13.77 2 19881000 35519 1262 23650 24101 41789 41789 209;210 -0.02544378883385434 LPMINNVMY 9 Unmodified _LPMINNVMY_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7738647460938 2 547.772288 1093.53002 0.89709 0.0004914 0.082453 4.5165E-05 0.97954 0.00053657 547.772539579745 83.861 0.41379 77.685 77.442 77.856 -6.1757 36 21 2 0 0 0 0.078417 1 55233 55233 38.151 23.569 1 10788000 35520 1262 23650 24102 41790 41790 -0.013000750207766032 LPMKETGLMY 10 2 Oxidation (M) _LPM(Oxidation (M))KETGLM(Oxidation (M))Y_ LPM(1)KETGLM(1)Y LPM(72)KETGLM(72)Y 0 0 2 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7946166992188 2 607.793417 1213.57228 0.026666 1.6207E-05 -0.81392 -0.0004947 -0.78725 -0.00047849 607.7933447464762 39.866 0.41148 35.337 35.128 35.54 -4.5294 58 30 3 0 0 0 0.024351 2 23778 23643;23778 71.708 31.751 1 36279000 35521 10766 23651 24103 41791;41792 41792 1721;1722 -0.02596144403037215 LPMKETGLMY 10 Oxidation (M) _LPM(Oxidation (M))KETGLMY_ LPM(1)KETGLMY LPM(49)KETGLM(-49)Y 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7967529296875 2 599.79596 1197.57737 0.40353 0.00024204 -0.58206 -0.00034912 -0.17853 -0.00010708 599.7957651093033 47.915 0.72291 42.681 42.184 42.907 -5.2339 95 43 4 0 0 0 0.027278 1 29825 29825 69.338 40.257 2 30880000 35522 10766 23651 24104 41793 41793 1721;1722 -0.013518405404511213 LPMKETGLMY 10 Oxidation (M) _LPMKETGLM(Oxidation (M))Y_ LPMKETGLM(1)Y LPM(-55)KETGLM(55)Y 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7963256835938 2 599.79596 1197.57737 0.51286 0.00030761 -0.42848 -0.000257 0.084381 5.0611E-05 599.7958640066329 50.187 0.43536 44.648 44.452 44.888 -5.5391 79 27 4 0 0 0 0.024351 2 31506 31365;31506 71.708 37.306 2 60815000 35523 10766 23651 24104 41794;41795 41795 1721;1722 -0.013518405404511213 LPMKETGLMY 10 Unmodified _LPMKETGLMY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 591.7976684570312 2 591.798503 1181.58245 NaN NaN NaN NaN NaN NaN NaN 57.93 1 51.902 51.402 52.402 -6.0275 0 0 0 0.015221 1 37087 37087 70.332 37.546 1 35524 10766 23651 24105 41796 41796 -0.00107536677819553 LPMKETGLMY 10 Unmodified _LPMKETGLMY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC;ENST00000536483.1_1_8:48686736-48691238:-|nuORF ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 591.7992553710938 2 591.798503 1181.58245 NaN NaN NaN NaN NaN NaN NaN 58.122 1 52.094 51.594 52.594 -6.0275 0 0 0 0.026837 1 37226 37226 87.258 51.214 1 35525 10766 23651 24105 41797 41797 -0.00107536677819553 LPMKFKPMKF 10 Unmodified _LPMKFKPMKF_ 0 0 0 REV__ENSG00000185567|ENST00000333244|AHNAK2 REV__ENSG00000185567|ENST00000333244|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9097290039062 3 422.908224 1265.70284 1.5509 0.00065588 -0.85557 -0.00036183 0.6953 0.00029405 422.9081056181425 97.773 0.25512 91.598 91.493 91.749 -6.1757 40 17 3 0 0 0 0.33553 1 64770 64770 27.223 1.2025 1 35887000 + 35526 23510 23652 24106 41798 41798 0.08061916106453282 LPMKRQPA 8 Unmodified _LPMKRQPA_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7732238769531 2 470.77348 939.532406 0.68556 0.00032274 -2.4353 -0.0011465 -1.7497 -0.00082372 470.7722086281149 57.778 0.28017 57.712 57.554 57.834 -0.066036 20 13 2 0 0 0 0.80676 1 31449 31449 2.5775 1.7838 1 1389800 + 35527 22382 23653 24107 41799 41799 0.06022141499192912 LPMKRQPA 8 Unmodified _LPMKRQPA_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.77348 939.532406 0.59502 0.00028012 -1.4588 -0.00068677 -0.8638 -0.00040665 470.77326013860744 57.83 0.16288 57.83 57.754 57.917 0 0.059134 0.00070019 NaN 2.5775 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 442830 + 35528 22382 23653 24107 0.06022141499192912 LPMKRQPA 8 Unmodified _LPMKRQPA_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.77348 939.532406 0.68556 0.00032274 -2.4353 -0.0011465 -1.7497 -0.00082372 470.7722086281149 57.778 0.28017 57.712 57.554 57.834 -0.066036 -0.059134 -0.00021919 NaN 2.5775 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1389800 + 35529 22382 23653 24107 0.06022141499192912 LPMKVVDMF 9 Unmodified _LPMKVVDMF_ 0 0 0 nc|ENSG00000033011|Q9BT22-2|ALG1;ENSG00000033011|ENST00000262374|ALG1;ENST00000437882.2_1_12:8382094-8384253:+|nuORF;ENST00000482834.1_1_3:155761946-155762456:-|nuORF;ENSG00000251287|ENST00000425059|ALG1L2 nc|ENSG00000033011|Q9BT22-2|ALG1 nc|ENSG00000033011|Q9BT22-2|ALG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2847290039062 2 540.285031 1078.55551 1.044 0.00056407 1.6679 0.00090116 2.712 0.0014652 540.2854174870998 94.377 0.83131 88.201 87.862 88.693 -6.1757 73 48 2 0 0 0 0.040683 1 62647 62647 49.554 13.51 1 25343000 35530 595 23654 24108 41800 41800 0.019373995016621848 LPMLNRQDPF 10 Unmodified _LPMLNRQDPF_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3171997070312 2 615.818615 1229.62268 0.4752 0.00029264 -1.3081 -0.00080558 -0.83295 -0.00051294 616.3199345904479 68.014 0.72305 61.839 61.288 62.011 -6.1757 75 41 2 0 0 0 0.016642 1 44129 44129 78.728 2.9672 1 86860000 35531 680 23655 24109 41801 41801 0.017051460369657434 LPMNHKEKF 9 Unmodified _LPMNHKEKF_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8708801269531 3 381.870826 1142.59065 1.6378 0.00062542 -1.5187 -0.00057993 0.11913 4.5491E-05 381.87014124076757 21.273 0.29653 18.58 18.414 18.711 -2.693 50 23 3 0 0 0 0.18144 1 11402 11402 23.801 7.2352 1 11875000 35532 7406 23656 24110 41802 41802 0.02505778353815913 LPMPASGTSL 10 Oxidation (M) _LPM(Oxidation (M))PASGTSL_ LPM(1)PASGTSL LPM(93)PASGTSL 0 0 1 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2516174316406 2 495.252243 988.489932 -0.3405 -0.00016863 -0.04118 -2.0395E-05 -0.38168 -0.00018903 495.2522784534916 44.828 0.21026 44.828 44.749 44.959 0 18 10 2 0 0 0 0.0071864 1 24432 24432 92.822 34.143 1 26028000 35533 5370 23657 24111 41803 41803 989 -0.004772984196733887 LPMPKIEWS 9 Unmodified _LPMPKIEWS_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1960754394531 3 367.531811 1099.5736 -0.30194 -0.00011097 -2.4346 -0.00089478 -2.7365 -0.0010058 367.5312073458177 31.741 0.1513 31.771 31.648 31.8 0.030104 10 6 2 0 0 0 0.21367 1 16647 16647 2.7352 0.64919 1 1237000 35534 6400 23658 24112 41804 41804 0.027798577480098174 LPMRMLEVF 9 Unmodified _LPMRMLEVF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3037109375 2 568.303755 1134.59296 0.13195 7.4988E-05 0.0058715 3.3368E-06 0.13782 7.8325E-05 568.303744976032 32.098 0.38012 31.969 31.769 32.149 -0.12915 29 14 3 0 0 0 0.49272 1 16701 16701 7.9102 1.187 1 2330500 35535 402 23659 24113 41805 41805 0.03104490767259449 LPMRMLEVF 9 Unmodified _LPMRMLEVF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3040161132812 2 568.303755 1134.59296 0.76321 0.00043374 0.24608 0.00013985 1.0093 0.00057359 568.3037996398238 98.634 0.18536 92.458 92.365 92.551 -6.1757 32 13 3 0 0 0 0.044011 1 65448 65448 47.749 12.136 1 133810000 35536 402 23659 24113 41806 41806 0.03104490767259449 LPMRMLEVF 9 Oxidation (M) _LPMRM(Oxidation (M))LEVF_ LPM(0.21)RM(0.79)LEVF LPM(-5.7)RM(5.7)LEVF 0 0 1 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.30126953125 2 576.301213 1150.58787 0.97166 0.00055997 -0.73093 -0.00042124 0.24073 0.00013873 576.3007864355002 65.678 0.19798 65.678 65.52 65.718 7.6294E-06 16 9 2 0 0 0 0.047788 1 36018 36018 45.7 20.709 2 4313800 35537 402 23659 24114 41807 41807 48 0.018601869046278807 LPMTDLDIKF 10 Oxidation (M) _LPM(Oxidation (M))TDLDIKF_ LPM(1)TDLDIKF LPM(81)TDLDIKF 0 0 1 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8155517578125 2 604.815207 1207.61586 0.045959 2.7796E-05 0.23875 0.0001444 0.2847 0.00017219 604.8156754384842 69.244 0.44147 68.764 68.506 68.948 -0.48071 58 18 4 0 0 0 0.014503 2 37908 37803;37908 80.676 54.408 1 7876100 35538 3321 23660 24115 41808;41809 41809 592 0.020357883657197817 LPMTDLDIKF 10 Oxidation (M) _LPM(Oxidation (M))TDLDIKF_ LPM(1)TDLDIKF LPM(70)TDLDIKF 0 0 1 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8148803710938 2 604.815207 1207.61586 0.58365 0.000353 0.21059 0.00012737 0.79424 0.00048037 604.8152975195223 68.711 0.31977 68.736 68.582 68.902 0.025146 25 14 2 0 0 0 0.025861 1 37755 37755 70.332 46.311 1 5631300 35539 3321 23660 24115 41810 41810 592 0.020357883657197817 LPMTDLDIKF 10 Unmodified _LPMTDLDIKF_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.81884765625 2 596.81775 1191.62095 NaN NaN NaN NaN NaN NaN NaN 79.869 1 79.38 78.88 79.88 -0.48932 0 0 0 0.36315 1 43747 43747 33.445 22.621 1 35540 3321 23660 24116 41811 41811 0.03280092228328613 LPMTDLDIKF 10 Unmodified _LPMTDLDIKF_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3244018554688 2 596.81775 1191.62095 -0.3767 -0.00022482 1.4435 0.00086149 1.0668 0.00063667 597.3218864102935 93.151 0.80898 86.975 86.642 87.451 -6.1757 138 56 4 0 0 0 0.11654 2 61767 61629;61767 43.982 24.725 1 98822000 35541 3321 23660 24116 41812;41813 41813 0.03280092228328613 LPMVLLGVLM 10 Unmodified _LPMVLLGVLM_ 0 0 0 REV__nc|ENSG00000147246|P28335-2|HTR2C REV__nc|ENSG00000147246|P28335-2|HTR2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5538330078125 3 362.553558 1084.63885 NaN NaN NaN NaN NaN NaN NaN 18.581 1 18.604 18.104 19.104 0.023106 0 0 0 1.0019 1 9326 9326 0.15932 0 1 + 35542 20876 23661 24117 41814 41814 0.09991135949508134 LPMWMPEFF 9 Unmodified _LPMWMPEFF_ 0 0 0 ENSG00000186625|ENST00000367411|KATNA1;ENST00000481905.5_1_6:149919348-149924475:-|nuORF;ENST00000494504.5_1_6:149922923-149925837:-|nuORF ENSG00000186625|ENST00000367411|KATNA1 ENSG00000186625|ENST00000367411|KATNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.277587890625 2 599.277206 1196.53986 NaN NaN NaN NaN NaN NaN NaN 99.34 1 99.183 98.683 99.683 -0.1575 0 0 0 0.84369 1 54237 54237 2.3027 0 1 35543 9487 23662 24118 41815 41815 -0.0505488701539889 LPMWRLWL 8 Unmodified _LPMWRLWL_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7589111328125 2 557.815147 1113.61574 NaN NaN NaN NaN NaN NaN NaN 57.964 1 57.474 56.974 57.974 -0.48974 0 0 0 0.97444 1 31508 31508 2.8892 0.31174 1 + 35544 17447 23663 24119 41816 41816 0.06347877947064262 LPMWRVTAF 9 Unmodified _LPMWRVTAF_ 0 0 0 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8034057617188 2 560.802237 1119.58992 0.55347 0.00031038 2.002 0.0011227 2.5555 0.0014331 560.8032962797022 77.409 0.2364 77.459 77.346 77.583 0.05011 20 9 3 0 0 0 0.40615 1 42741 42741 17.113 10.39 1 2420400 35545 9732 23664 24120 41817 41817 0.03490983704773498 LPMWRVTAF 9 Unmodified _LPMWRVTAF_ 0 0 0 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8027954101562 2 560.802237 1119.58992 1.4541 0.00081548 0.41805 0.00023444 1.8722 0.0010499 560.802178541065 95.973 0.38747 89.798 89.601 89.989 -6.1757 68 23 4 0 0 0 0.10134 1 63533 63533 34.932 15.675 1 118020000 35546 9732 23664 24120 41818 41818 0.03490983704773498 LPNAASAPP 9 Unmodified _LPNAASAPP_ 0 0 0 ENSG00000155367|ENST00000309276|PPM1J;ENST00000464951.1_1_1:113257596-113257911:-|nuORF;ENST00000486709.1_1_1:113257111-113257923:-|nuORF ENSG00000155367|ENST00000309276|PPM1J ENSG00000155367|ENST00000309276|PPM1J MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.4469604492188 1 837.446494 836.439217 1.157 0.00096895 -0.023871 -1.9991E-05 1.1332 0.00094896 837.4462411650161 86.257 0.48862 80.081 79.794 80.283 -6.1757 31 26 2 0 0 0 0.03568 1 56784 56784 52.268 8.4101 1 8025600 35547 6384 23665 24121 41819 41819 0.014455403176043546 LPNAEAPI 8 Unmodified _LPNAEAPI_ 0 0 0 REV__ENSG00000198060|ENST00000358935|MARCHF5 REV__ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.45166015625 1 824.451245 823.443968 -0.42682 -0.00035189 -0.24992 -0.00020605 -0.67675 -0.00055795 824.4510061976362 76.556 0.50838 76.076 75.835 76.343 -0.47945 69 30 3 0 0 0 0.80143 1 42045 42045 5.7604 0 1 10382000 + 35548 23985 23666 24122 41820 41820 0.025184244603678962 LPNAMAISEM 10 2 Oxidation (M) _LPNAM(Oxidation (M))AISEM(Oxidation (M))_ LPNAM(1)AISEM(1) LPNAM(52)AISEM(52) 0 0 2 ENSG00000168374|ENST00000303436|ARF4 ENSG00000168374|ENST00000303436|ARF4 ENSG00000168374|ENST00000303436|ARF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7540893554688 2 554.754292 1107.49403 0.46476 0.00025783 -0.094948 -5.2673E-05 0.36981 0.00020515 554.7542330040783 37.35 0.54821 37.35 37.097 37.645 0 58 28 3 0 0 0 0.074936 1 19803 19803 52.268 18.166 1 6284300 35549 7752 23667 24123 41821 41821 1319;1320 -0.05541576988275665 LPNAVITRI 9 Unmodified _LPNAVITRI_ 0 0 0 ENSG00000148229|ENST00000374171|POLE3;ENST00000479871.1_1_9:116172333-116172573:-|nuORF ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8140258789062 2 498.813659 995.612765 -0.033906 -1.6913E-05 0.64617 0.00032232 0.61227 0.00030541 498.81395334177734 53.997 0.63327 53.93 53.725 54.359 -0.066936 67 31 3 0 0 0 0.011291 2 29284 29284;29386 76.825 34.73 1 5266700 35550 5908 23668 24124 41822;41823 41822 0.114783260938907 LPNAVITRI 9 Unmodified _LPNAVITRI_ 0 0 0 ENSG00000148229|ENST00000374171|POLE3;ENST00000479871.1_1_9:116172333-116172573:-|nuORF ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.8145141601562 2 498.813659 995.612765 1.0246 0.00051107 -0.28211 -0.00014072 0.74246 0.00037035 498.8135464970274 59.77 0.43389 53.655 53.452 53.886 -6.1147 39 24 2 0 0 0 0.0099157 2 38355 38355;38504 80.676 29.046 1 31692000 35551 5908 23668 24124 41824;41825 41824 0.114783260938907 LPNDGDEKY 9 Unmodified _LPNDGDEKY_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7403564453125 2 525.740554 1049.46655 0.039202 2.061E-05 1.1667 0.00061339 1.2059 0.000634 525.7407569235926 22.482 0.26591 22.482 22.324 22.59 0 23 12 3 0 0 0 0.13231 1 11458 11458 29.841 11.706 1 758240 35552 3937 23669 24125 41826 41826 -0.05620020932656189 LPNDKIKWL 9 Unmodified _LPNDKIKWL_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.2430114746094 3 376.225486 1125.65463 1.2081 0.00045452 2.7581 0.0010377 3.9662 0.0014922 376.22652172395027 82.807 0.3485 76.631 76.42 76.768 -6.1757 28 19 2 0 0 0 0.21493 1 54386 54386 4.897 1.9018 1 8747400 + 35553 20883 23670 24126 41827 41827 0.0968288178239618 LPNDKTLLY 9 Unmodified _LPNDKTLLY_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.80322265625 2 538.802957 1075.59136 -0.46063 -0.00024819 -0.66445 -0.00035801 -1.1251 -0.0006062 538.8034800439767 48.693 0.46023 48.693 48.413 48.874 0 69 21 6 0 0 0 0.014182 1 26715 26715 69.338 17.708 1 29192000 35554 5299 23671 24127 41828 41828 0.056588962745536264 LPNDKTLLY 9 Unmodified _LPNDKTLLY_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8030395507812 2 538.802957 1075.59136 0.21531 0.00011601 0.45159 0.00024332 0.6669 0.00035933 538.8031088884379 48.981 0.37168 48.609 48.427 48.799 -0.37172 53 18 4 0 0 0 0.044011 2 26254 26254;26361 47.749 10.868 1 21774000 35555 5299 23671 24127 41829;41830 41829 0.056588962745536264 LPNDKTLLY 9 Unmodified _LPNDKTLLY_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8038330078125 2 538.802957 1075.59136 0.29717 0.00016012 1.6437 0.00088564 1.9409 0.0010458 538.8033645042909 48.651 0.23816 48.607 48.476 48.714 -0.04369 27 11 3 0 0 0 0.036857 1 26241 26241 51.63 19.324 1 2352500 35556 5299 23671 24127 41831 41831 0.056588962745536264 LPNDKTLLY 9 Unmodified _LPNDKTLLY_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8033447265625 2 538.802957 1075.59136 0.61089 0.00032915 1.4138 0.00076176 2.0247 0.0010909 538.8027974533138 54.656 0.52968 48.791 48.542 49.072 -5.8653 106 32 5 0 0 0 0.029718 1 34684 34684 55.503 19.376 1 174530000 35557 5299 23671 24127 41832 41832 0.056588962745536264 LPNDVISSL 9 Unmodified _LPNDVISSL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2667541503906 2 479.266207 956.517862 0.4495 0.00021543 0.70191 0.0003364 1.1514 0.00055183 479.2664378216618 67.237 0.77846 67.237 66.86 67.639 0 82 35 4 0 0 0 0.0086904 2 37524 37418;37524 107.19 18.283 1 21559000 35558 3442 23672 24128 41833;41834 41834 0.03786347832055981 LPNDVISSL 9 Unmodified _LPNDVISSL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.5260620117188 1 957.525138 956.517862 0.12087 0.00011573 0.83394 0.00079852 0.95481 0.00091425 957.5259436542495 67.248 0.39861 67.248 67.016 67.414 0 41 16 3 0 0 0 0.0017364 2 37523 37422;37523 134.3 27.109 1 5797500 35559 3442 23672 24128 41835;41836 41836 0.03786347832055981 LPNDVISSL 9 Unmodified _LPNDVISSL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 957.525146484375 1 957.525138 956.517862 0.49258 0.00047166 -0.073606 -7.048E-05 0.41897 0.00040118 957.5251969044249 67.737 0.3367 67.255 67.075 67.411 -0.48218 33 14 3 0 0 0 0.032796 2 36955 36955;37056 53.833 17.706 1 3241100 35560 3442 23672 24128 41837;41838 41837 0.03786347832055981 LPNDVISSL 9 Unmodified _LPNDVISSL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.26611328125 2 479.266207 956.517862 0.69625 0.00033369 -0.17857 -8.5585E-05 0.51767 0.0002481 479.26602821266795 67.731 0.44466 67.248 67.031 67.475 -0.48218 56 19 4 0 0 0 0.03568 2 36972 36972;37070 52.268 14.294 1 10328000 35561 3442 23672 24128 41839;41840 41839 0.03786347832055981 LPNDVISSL 9 Unmodified _LPNDVISSL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 479.266207 956.517862 0.50117 0.00024019 -3.6458 -0.0017473 -3.1446 -0.0015071 479.2642009950385 67.21 0.11591 67.228 67.161 67.277 0.018028 -0.0095932 -0.0038284 NaN 107.19 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1205500 35562 3442 23672 24128 0.03786347832055981 LPNEELSVI 9 Unmodified _LPNEELSVI_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2794494628906 2 507.279315 1012.54408 -0.30775 -0.00015612 -0.17041 -8.6443E-05 -0.47816 -0.00024256 507.2788865580596 76.501 0.4286 76.021 75.787 76.216 -0.47945 36 26 2 0 0 0 0.12424 1 41844 41844 30.637 1.555 1 2342400 + 35563 29730 23673 24129 41841 41841 0.03830617003529824 LPNEELSVI 9 Unmodified _LPNEELSVI_ 0 0 0 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 REV__nc|ENSG00000158865|Q8WWX8-4|SLC5A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2790832519531 2 507.279315 1012.54408 0.68447 0.00034722 -0.529 -0.00026835 0.15547 7.8866E-05 507.27908887949997 84.208 0.65546 78.033 77.645 78.3 -6.1757 76 35 3 0 0 0 0.00856 2 55259 55259;55386 100.37 15.099 1 47027000 + 35564 29730 23673 24129 41842;41843 41842 0.03830617003529824 LPNEGRNDY 9 Unmodified _LPNEGRNDY_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7529907226562 2 539.25162 1076.48869 -0.21375 -0.00011527 -1.2566 -0.00067765 -1.4704 -0.00079291 539.2512095040688 21.442 0.21469 21.442 21.345 21.559 0 43 28 2 0 0 0 0.19994 1 10803 10803 12.241 2.8932 1 1649600 35565 851 23674 24130 41844 41844 -0.04649796464218525 LPNEKVNSL 9 Unmodified _LPNEKVNSL_ 0 0 0 REV__ENST00000548252.1_1_12:95451549-95452129:-|nuORF REV__ENST00000548252.1_1_12:95451549-95452129:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.8069458007812 2 507.284931 1012.55531 1.135 0.00057579 0.74762 0.00037926 1.8827 0.00095505 507.28565307820634 37.237 0.42027 32.953 32.736 33.156 -4.2835 40 25 2 0 0 0 0.067365 1 21963 21963 28.495 0 1 7193200 + 35566 28683 23675 24131 41845 41845 0.04953439097675982 LPNETEPGV 9 Unmodified _LPNETEPGV_ 0 0 0 REV__nc|ENSG00000158714|Q9P0V8-2|SLAMF8 REV__nc|ENSG00000158714|Q9P0V8-2|SLAMF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2409362792969 2 478.24019 954.465826 0.65126 0.00031146 1.8931 0.00090536 2.5444 0.0012168 478.2406536644914 56.352 0.38931 50.375 50.172 50.561 -5.9769 54 22 3 0 0 0 0.16226 1 35972 35972 26.884 3.7352 1 43231000 + 35567 21440 23676 24132 41846 41846 -0.013228155816932485 LPNFEKSLF 9 Unmodified _LPNFEKSLF_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5 REV__ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7996826171875 2 547.797675 1093.5808 1.0121 0.00055443 -1.1664 -0.00063897 -0.15432 -8.4539E-05 547.7970594799676 95.042 1.874 88.867 87.622 89.496 -6.1757 211 108 3 0 0 0 0.32871 1 62348 62348 15.847 1.0089 1 131530000 + 35568 24048 23677 24133 41847 41847 0.03774913620077314 LPNFFQFPL 9 Unmodified _LPNFFQFPL_ 0 0 0 REV__ENSG00000169594|ENST00000345382|BNC1 REV__ENSG00000169594|ENST00000345382|BNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.801025390625 2 561.80276 1121.59097 NaN NaN NaN NaN NaN NaN NaN 48.117 1 47.765 47.265 48.265 -0.3526 0 0 0 0.096036 1 25814 25814 44.407 0.54872 1 + 35569 22408 23678 24134 41848 41848 0.035035213453284086 LPNFGFVVF 9 Unmodified _LPNFGFVVF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1040.644165039062 1 1039.56113 1038.55385 -0.23812 -0.00024755 0.62854 0.00065341 0.39042 0.00040586 1039.5618869235382 101.25 0.082092 101.2 101.16 101.24 -0.04216 6 2 3 0 0 0 0.019303 1 56254 56254 64.236 42.49 1 14675000 35570 5098;5738 23679 24135 41849 41849 0.03611849799585798 LPNFGFVVF 9 Unmodified _LPNFGFVVF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2845458984375 2 520.284203 1038.55385 -0.63754 -0.0003317 1.1324 0.00058915 0.49482 0.00025744 520.2846799339984 101.25 0.13614 101.21 101.14 101.27 -0.042152 11 4 4 0 0 0 0.14602 1 56264 56264 28.487 10.352 1 17757000 35571 5098;5738 23679 24135 41850 41850 0.03611849799585798 LPNFGFVVF 9 Unmodified _LPNFGFVVF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000145907|ENST00000356245|G3BP1 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2847290039062 2 520.284203 1038.55385 0.76138 0.00039614 -0.98499 -0.00051248 -0.22361 -0.00011634 520.2835412677788 101.76 0.1407 95.58 95.503 95.644 -6.1757 25 10 3 0 0 0 0.06187 1 68295 68295 42.095 23.96 1 173180000 35572 5098;5738 23679 24135 41851 41851 0.03611849799585798 LPNFGSHVL 9 Unmodified _LPNFGSHVL_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;ENST00000497580.5_1_9:128094832-128103560:+|nuORF nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2700500488281 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 57.406 1 57.34 56.84 57.84 -0.066036 0 0 0 0.047623 1 31247 31247 58.679 22.635 1 35573 7311 23680 24136 41852 41852 0.03165491134382137 LPNFKQNEF 9 Unmodified _LPNFKQNEF_ 0 0 0 ENST00000601728.1_1_19:23310047-23310578:-|nuORF;ENSG00000129515|ENST00000362031|SNX6;ENST00000556303.1_1_14:35074800-35099358:-|nuORF ENST00000601728.1_1_19:23310047-23310578:-|nuORF;ENSG00000129515|ENST00000362031|SNX6 ENSG00000129515|ENST00000362031|SNX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7908325195312 2 568.790381 1135.56621 1.3395 0.00076187 -0.63326 -0.00036019 0.70619 0.00040167 568.7905298092845 54.304 0.58354 48.439 48.099 48.682 -5.8653 70 34 3 0 0 0 0.013118 2 34308 34308;34443 88.954 62.686 1 200390000 35574 4145;15811 23681 24137 41853;41854 41853 0.003848414719413995 LPNFKQNEF 9 Unmodified _LPNFKQNEF_ 0 0 0 ENST00000601728.1_1_19:23310047-23310578:-|nuORF;ENSG00000129515|ENST00000362031|SNX6;ENST00000556303.1_1_14:35074800-35099358:-|nuORF ENST00000601728.1_1_19:23310047-23310578:-|nuORF;ENSG00000129515|ENST00000362031|SNX6 ENSG00000129515|ENST00000362031|SNX6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.790381 1135.56621 -0.38915 -0.00022134 -1.7208 -0.00097879 -2.11 -0.0012001 569.290492291524 48.651 0.35792 48.651 48.47 48.828 0 0.10633 -0.0010323 NaN 88.954 48 16 4 NaN NaN NaN NaN 0 NaN NaN 0 5746800 35575 4145;15811 23681 24137 0.003848414719413995 LPNFKTYY 8 Unmodified _LPNFKTYY_ 0 0 0 L1MC1_dup2138|chr3:11203375-11203979:-|1.2904675871506348|0.2278259033593264|2.5|179.0|9|2|sense L1MC1_dup2138|chr3:11203375-11203979:-|1.2904675871506348|0.2278259033593264|2.5|179.0|9|2|sense L1MC1_dup2138|chr3:11203375-11203979:-|1.2904675871506348|0.2278259033593264|2.5|179.0|9|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.8318481445312 2 523.271293 1044.52803 0.74386 0.00038924 -1.0523 -0.00055064 -0.30844 -0.0001614 523.2714192530767 57.948 0.21485 57.882 57.755 57.97 -0.066036 19 10 2 0 0 0 8.7369 1 31563 31563 6.3541 0 1 2254100 35576 15948 23682 24138 41855 41855 0.007549555572722966 LPNFLAVAL 9 Unmodified _LPNFLAVAL_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 957.580078125 1 957.57678 956.569503 1.3561 0.0012986 1.9719 0.0018883 3.3281 0.0031869 957.5781946599062 100.56 0.084412 100.51 100.45 100.53 -0.04216 4 2 2 0 0 0 0.010877 1 55863 55863 77.984 21.443 1 4516200 35577 5884 23683 24139 41856 41856 0.0894813631659872 LPNFLAVAL 9 Unmodified _LPNFLAVAL_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.580322265625 1 957.57678 956.569503 0.78441 0.00075113 -2.2272 -0.0021327 -1.4428 -0.0013816 957.5783061889967 101.36 0.10639 95.183 95.125 95.231 -6.1757 13 5 3 0 0 0 0.0090851 1 68000 68000 85.357 28.815 1 36661000 35578 5884 23683 24139 41857 41857 0.0894813631659872 LPNFLAVAL 9 Unmodified _LPNFLAVAL_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000464332.5_1_8:144658600-144658955:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2927551269531 2 479.292028 956.569503 1.0207 0.00048921 -0.66513 -0.00031879 0.35557 0.00017042 479.29201613420673 101.37 0.10639 95.192 95.125 95.231 -6.1757 15 5 4 0 0 0 0.06187 1 68005 68005 42.095 6.0504 1 44493000 35579 5884 23683 24139 41858 41858 0.0894813631659872 LPNFQQSVQEY 11 Unmodified _LPNFQQSVQEY_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3307495117188 2 676.827692 1351.64083 0.077923 5.274E-05 1.1106 0.00075167 1.1885 0.00080441 676.828510572056 58.372 0.33851 58.372 58.103 58.441 0 21 12 2 0 0 0 0.53952 1 32501 32501 14.405 6.7964 1 878280 35580 349 23684 24140 41859 41859 -0.020924405072946684 LPNFQQSVQEY 11 Unmodified _LPNFQQSVQEY_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3299560546875 2 676.827692 1351.64083 0.27084 0.00018331 1.1883 0.00080426 1.4591 0.00098758 676.8284711259722 59.036 0.35841 58.545 58.348 58.707 -0.49079 37 16 3 0 0 0 0.15156 1 32073 32073 36.506 23.464 1 2896200 35581 349 23684 24140 41860 41860 -0.020924405072946684 LPNFQQSVQEY 11 Unmodified _LPNFQQSVQEY_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.828369140625 2 676.827692 1351.64083 0.81798 0.00055363 -0.23713 -0.0001605 0.58084 0.00039313 676.8277246907631 66.219 0.42181 60.044 59.824 60.245 -6.1757 49 23 3 0 0 0 4.2801E-06 2 42996 42996;43140 96.936 51.236 1 27087000 35582 349 23684 24140 41861;41862 41861 -0.020924405072946684 LPNGDKDHYF 10 Unmodified _LPNGDKDHYF_ 0 0 0 REV__nc|ENSG00000185621|Q96KR4-2|LMLN REV__nc|ENSG00000185621|Q96KR4-2|LMLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2841796875 2 603.28292 1204.55129 NaN NaN NaN NaN NaN NaN NaN 46.068 1 45.732 45.232 46.232 -0.33664 0 0 0 0.81521 1 24642 24642 11.64 1.5664 1 + 35583 23513 23685 24141 41863 41863 -0.04280650396049168 LPNGLRESI 9 Unmodified _LPNGLRESI_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9;ENST00000479374.1_1_1:201816429-201819601:+|nuORF ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7849426269531 2 499.785099 997.555644 0.96013 0.00047986 -0.29203 -0.00014595 0.6681 0.00033391 499.7849996530505 42.595 0.23725 42.595 42.445 42.682 0 17 11 2 0 0 0 0.078314 1 23043 23043 38.176 3.7738 1 3765000 35584 10126 23686 24142 41864 41864 0.05676858817525954 LPNGLRESI 9 Unmodified _LPNGLRESI_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9;ENST00000479374.1_1_1:201816429-201819601:+|nuORF ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.785099 997.555644 0.96013 0.00047986 -0.29203 -0.00014595 0.6681 0.00033391 499.7849996530505 42.595 0.23725 42.595 42.445 42.682 0 -0.17587 -0.00018358 NaN 38.176 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3765000 35585 10126 23686 24142 0.05676858817525954 LPNGMIVTL 9 Oxidation (M) _LPNGM(Oxidation (M))IVTL_ LPNGM(1)IVTL LPNGM(54)IVTL 0 0 1 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2742614746094 2 487.272978 972.531403 0.44434 0.00021651 0.24318 0.0001185 0.68752 0.00033501 487.2734332474314 65.157 0.32373 64.673 64.511 64.835 -0.48428 31 14 3 0 0 0 0.03327 1 35539 35539 53.576 17.531 1 2725000 35586 3604 23687 24143 41865 41865 635 0.0440388233964768 LPNGMIVTL 9 Unmodified _LPNGMIVTL_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2744445800781 2 479.275521 956.536489 1.3803 0.00066157 -2.4123 -0.0011562 -1.032 -0.00049459 479.27408630613155 87.952 0.32096 81.776 81.636 81.956 -6.1757 22 17 2 0 0 0 0.047196 1 58003 58003 46.021 7.8698 1 7977700 35587 3604 23687 24144 41866 41866 0.05648186202256511 LPNGPTHAF 9 Unmodified _LPNGPTHAF_ 0 0 0 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2454223632812 2 477.245609 952.476666 NaN NaN NaN NaN NaN NaN NaN 36.403 1 36.153 35.653 36.653 -0.2497 0 0 0 0.053277 1 19098 19098 56.177 12.319 1 35588 6114 23688 24145 41867 41867 -0.0014736841676494805 LPNGQPTVL 9 Unmodified _LPNGQPTVL_ 0 0 0 nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7687683105469 2 469.768917 937.523281 0.82602 0.00038804 0.10394 4.8829E-05 0.92996 0.00043687 469.76897053893816 49.919 0.57239 49.526 49.238 49.811 -0.3923 39 28 3 0 0 0 0.06187 1 26878 26878 42.095 17.421 1 2791600 35589 4906 23689 24146 41868 41868 0.05202071414510101 LPNHNLIL 8 Unmodified _LPNHNLIL_ 0 0 0 REV__ENSG00000176809|ENST00000584306|LRRC37A3 REV__ENSG00000176809|ENST00000584306|LRRC37A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2796630859375 2 467.279452 932.544351 0.85999 0.00040186 0.57147 0.00026703 1.4315 0.00066889 467.2797138529164 63.455 0.44815 57.28 57.075 57.523 -6.1757 43 25 2 0 0 0 0.65867 1 41024 41024 20.871 1.4322 1 16920000 + 35590 22939 23690 24147 41869 41869 0.07538081514042005 LPNHRVLIM 9 Unmodified _LPNHRVLIM_ 0 0 0 ENST00000461108.5_1_3:52003444-52003858:-|nuORF;nc|ENSG00000114779|Q96IU4-2|ABHD14B;ENST00000487005.1_1_3:52003444-52008077:-|nuORF;ENSG00000114779|ENST00000361143|ABHD14B ENST00000461108.5_1_3:52003444-52003858:-|nuORF ENST00000461108.5_1_3:52003444-52003858:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8831176757812 3 364.883066 1091.62737 1.0148 0.00037029 -0.49632 -0.0001811 0.51851 0.00018919 364.8832238396206 45.285 0.39057 40.33 40.113 40.504 -4.9549 56 26 3 0 0 0 0.095405 1 27699 27699 31.268 16.02 1 32528000 35591 3062 23691 24148 41870 41870 0.08522074970392168 LPNHSYVF 8 Unmodified _LPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7472534179688 2 488.747985 975.481417 0.31579 0.00015434 -0.30919 -0.00015111 0.0066073 3.2293E-06 488.7477450356463 45.75 0.29362 45.75 45.567 45.86 0 33 14 3 0 0 0 0.38465 1 24919 24919 46.021 17.534 1 10119000 35592 4412 23692 24149 41871 41871 -0.00730484274004084 LPNHSYVF 8 Unmodified _LPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2513732910156 2 488.747985 975.481417 0.37015 0.00018091 0.076023 3.7156E-05 0.44617 0.00021806 488.7479780962972 46.004 0.40018 45.679 45.494 45.894 -0.32425 59 20 4 0 0 0 0.19688 3 24531 24531;24548;24656 71.134 20.279 1 97684000 35593 4412 23692 24149 41872;41873;41874 41872 -0.00730484274004084 LPNHSYVF 8 Unmodified _LPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7481689453125 2 488.747985 975.481417 0.39293 0.00019204 -0.1553 -7.5902E-05 0.23763 0.00011614 488.74789474350104 45.692 0.25585 45.664 45.549 45.804 -0.028011 29 12 3 0 0 0 0.19688 1 24552 24552 71.134 37.031 1 6465200 35594 4412 23692 24149 41875 41875 -0.00730484274004084 LPNHSYVF 8 Unmodified _LPNHSYVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7486267089844 2 488.747985 975.481417 1.0207 0.00049889 0.10098 4.9355E-05 1.1217 0.00054824 488.74798675667836 50.886 0.61097 45.237 44.975 45.586 -5.649 108 37 4 0 0 0 0.19688 3 31855 31855;31978;32112 71.134 37.031 1 403180000 35595 4412 23692 24149 41876;41877;41878 41876 -0.00730484274004084 LPNIDCNEYD 10 Unmodified _LPNIDCNEYD_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8870544433594 3 399.169378 1194.4863 -0.53509 -0.00021359 -2.9803 -0.0011897 -3.5154 -0.0014032 399.1683127847864 19.237 0.16726 19.237 19.173 19.34 0 24 10 4 0 0 0 0.23946 1 9613 9613 3.5871 0.85186 1 2095900 + 35596 29885 23693 24150 41879 41879 -0.103160129842081 LPNIKVHAY 9 Unmodified _LPNIKVHAY_ 0 0 0 nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.2067260742188 3 352.206315 1053.59712 -0.053348 -1.879E-05 0.43096 0.00015179 0.37761 0.000133 352.2063657063618 39.144 0.22399 38.857 38.719 38.943 -0.28687 15 9 2 0 0 0 0.1685 1 20644 20644 26.268 19.166 1 2442800 35597 2557 23694 24151 41880 41880 0.07246039576853036 LPNIKVHAY 9 Unmodified _LPNIKVHAY_ 0 0 0 nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2071838378906 3 352.206315 1053.59712 1.3947 0.00049123 0.71898 0.00025323 2.1137 0.00074446 352.2064433402325 43.371 0.48218 38.606 38.419 38.901 -4.7648 45 32 2 0 0 0 0.11784 1 26372 26372 31.268 19.028 1 22126000 35598 2557 23694 24151 41881 41881 0.07246039576853036 LPNIQAVLL 9 Unmodified _LPNIQAVLL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8110046386719 2 490.810585 979.606617 1.7083 0.00083847 -0.52277 -0.00025658 1.1856 0.00058188 490.81032753547777 92.287 0.41597 92.317 92.078 92.494 0.030197 37 15 3 0 0 0 0.023164 2 51261 51261;51375 60.39 0 1 8072400 35599 9238;9236 23695 24152 41882;41883 41882 0.11599807862364742 LPNITDSIY 9 Unmodified _LPNITDSIY_ 0 0 0 ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR ENSG00000174417|ENST00000518632|TRHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2716064453125 2 518.27149 1034.52843 0.74394 0.00038556 -2.4789 -0.0012847 -1.7349 -0.00089916 518.271433906931 60.411 0.509 60.411 60.137 60.646 0 69 22 4 0 0 0 0.32871 1 33783 33783 15.847 1.2655 1 15220000 35600 8417 23696 24153 41884 41884 0.012543304864948368 LPNITTTYL 9 Unmodified _LPNITTTYL_ 0 0 0 ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4;ENST00000543430.5_1_12:121659934-121670518:+|nuORF;ENST00000541187.5_1_12:121659934-121666726:+|nuORF;ENST00000538417.2_3_12:121659934-121670193:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2533569335938 2 518.289682 1034.56481 0.59923 0.00031057 -0.35631 -0.00018467 0.24291 0.0001259 518.2901458944771 73.064 0.37289 72.588 72.386 72.758 -0.47588 20 16 2 0 0 0 0.20528 1 40038 40038 8.5933 0 1 1858000 35601 4674 23697 24154 41885 41885 0.048912073831616 LPNKATLGHFY 11 Unmodified _LPNKATLGHFY_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8966064453125 3 420.896029 1259.66626 0.56547 0.000238 0.21083 8.8736E-05 0.7763 0.00032674 420.89609446268054 42.931 0.19702 42.915 42.802 42.999 -0.015671 10 8 2 0 0 0 0.557 1 23025 23025 13.519 6.4169 1 3006000 35602 5969 23698 24155 41886 41886 0.04681078805765537 LPNKDGVVRF 10 Unmodified _LPNKDGVVRF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2206420898438 3 382.220624 1143.64004 -0.09643 -3.6858E-05 0.64555 0.00024674 0.54912 0.00020988 382.2208769483818 37.581 0.36943 37.31 37.092 37.462 -0.27133 39 15 4 0 0 0 0.34306 1 19691 19691 24.957 10.552 1 6842600 35603 16096;16097 23699 24156 41887 41887 0.07396809634292367 LPNKDGVVRF 10 Unmodified _LPNKDGVVRF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2209167480469 3 382.220624 1143.64004 -0.20262 -7.7445E-05 1.0986 0.00041992 0.89601 0.00034247 382.22101720484596 37.179 0.37225 37.2 37.048 37.42 0.021542 36 16 3 0 0 0 0.35999 1 19720 19720 23.964 13.89 1 3265600 35604 16096;16097 23699 24156 41888 41888 0.07396809634292367 LPNKDGVVRF 10 Unmodified _LPNKDGVVRF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2214965820312 3 382.220624 1143.64004 2.0379 0.00077892 -0.52924 -0.00020229 1.5086 0.00057663 382.22054888396366 41.781 0.55643 37.173 36.91 37.467 -4.6079 93 35 4 0 0 0 0.26936 2 25079 25079;25219 29.281 15.666 1 42780000 35605 16096;16097 23699 24156 41889;41890 41889 0.07396809634292367 LPNKDGVVRF 10 Unmodified _LPNKDGVVRF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.828125 2 572.827298 1143.64004 1.7693 0.0010135 -0.49949 -0.00028612 1.2698 0.00072737 572.8269233717443 41.86 0.24936 37.252 37.062 37.311 -4.6079 24 15 2 0 0 0 0.1379 1 25123 25123 40.239 23.126 1 7267000 35606 16096;16097 23699 24156 41891 41891 0.07396809634292367 LPNKDVYK 8 Unmodified _LPNKDVYK_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7773132324219 2 488.776742 975.538931 0.21734 0.00010623 0.18079 8.8364E-05 0.39813 0.0001946 488.77684898736703 92.259 0.2408 92.259 92.075 92.315 0 22 16 2 0 0 0 0.80311 1 51003 51003 4.756 0 1 479430 35607 8450 23700 24157 41892 41892 0.05018357931567152 LPNKERRCF 9 Unmodified _LPNKERRCF_ 0 0 0 REV__ENST00000511203.1_1_4:100871207-100871327:-|nuORF REV__ENST00000511203.1_1_4:100871207-100871327:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8115234375 2 581.811125 1161.6077 0.37293 0.00021698 -1.2187 -0.00070904 -0.84575 -0.00049207 581.8103443656274 67.18 0.29779 66.698 66.591 66.889 -0.48218 22 13 2 0 0 0 0.43515 1 36790 36790 10.824 2.2306 1 5374200 + 35608 28156 23701 24158 41893 41893 0.033356989596313724 LPNKNRDEL 9 Unmodified _LPNKNRDEL_ 0 0 0 ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1;nc|ENSG00000059377|P24557-3|TBXAS1 ENST00000462275.5_1_7:139529186-139716213:+|nuORF ENST00000462275.5_1_7:139529186-139716213:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8687744140625 3 366.86825 1097.58292 NaN NaN NaN NaN NaN NaN NaN 18.396 1 18.396 17.896 18.896 0 0 0 0 0.82283 1 9142 9142 3.0723 0.81953 1 35609 813 23702 24159 41894 41894 0.03803342357900874 LPNKQVLGL 9 Unmodified _LPNKQVLGL_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.3078918457031 2 491.30821 980.601866 NaN NaN NaN NaN NaN NaN NaN 49.619 1 49.57 49.07 50.07 -0.048824 0 0 0 0.23581 1 26814 26814 28.487 6.7402 1 35610 4362 23703 24160 41895 41895 0.11078923719617251 LPNKSRQPSY 10 Unmodified _LPNKSRQPSY_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2171325683594 3 397.21565 1188.62512 0.77612 0.00030829 0.68948 0.00027387 1.4656 0.00058216 397.21591900569473 18.156 0.28369 15.534 15.372 15.655 -2.6215 39 22 2 0 0 0 0.51539 1 9523 9523 15.538 8.0614 1 5025500 35611 4794 23704 24161 41896 41896 0.038353177662884264 LPNKYNVSF 9 Unmodified _LPNKYNVSF_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.288818359375 2 541.287474 1080.5604 0.96019 0.00051974 -0.30834 -0.0001669 0.65184 0.00035284 541.28719481939 47.171 0.13295 47.137 47.069 47.202 -0.033421 11 6 2 0 0 0 0.094149 1 25413 25413 34.402 10.381 1 2381400 35612 7418 23705 24162 41897 41897 0.023337429602634074 LPNLKEVDVRY 11 Unmodified _LPNLKEVDVRY_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2540893554688 3 449.253993 1344.74015 0.69296 0.00031131 -0.22814 -0.00010249 0.46482 0.00020882 449.2538199018207 50.659 0.48602 50.245 50.032 50.518 -0.41351 50 23 3 0 0 0 0.17474 2 27242 27242;27346 33.593 23.066 1 4093100 35613 6274 23706 24163 41898;41899 41898 0.08157002177404138 LPNLLLHTF 9 Unmodified _LPNLLLHTF_ 0 0 0 ENST00000375771.5_2_1:16111194-16111311:+|nuORF ENST00000375771.5_2_1:16111194-16111311:+|nuORF ENST00000375771.5_2_1:16111194-16111311:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.7835083007812 2 534.316035 1066.61752 0.84141 0.00044958 -0.26694 -0.00014263 0.57447 0.00030695 534.3155385931066 78.849 0.78356 72.673 72.484 73.267 -6.1757 69 44 2 0 0 0 0.18521 1 51957 51957 16.942 9.0321 1 9086900 35614 12482 23707 24164 41900 41900 0.08687210236644205 LPNLMPIVTTY 11 Unmodified _LPNLMPIVTTY_ 0 0 0 REV__ENSG00000196341|ENST00000641015|OR8D1 REV__ENSG00000196341|ENST00000641015|OR8D1 MSMS AL20221201_MKP_PDAC_01 4 631.3458251953125 2 631.346674 1260.6788 NaN NaN NaN NaN NaN NaN NaN 100.34 1 94.16 93.66 94.66 -6.1757 0 0 0 0.64135 1 67066 67066 19.257 1.1106 1 + 35615 23790 23708 24165 41901 41901 0.05888354153785258 LPNNAKLEM 9 Oxidation (M) _LPNNAKLEM(Oxidation (M))_ LPNNAKLEM(1) LPNNAKLEM(66) 0 0 1 ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.270751953125 2 523.270967 1044.52738 -0.031329 -1.6394E-05 -0.10887 -5.6967E-05 -0.1402 -7.3361E-05 523.2707707158713 24.843 0.26141 24.843 24.678 24.94 0 46 14 5 0 0 0 0.017075 1 12685 12685 66.457 36.232 1 5413800 35616 7902 23709 24166 41902 41902 1340 0.006897928459011382 LPNNAKLEM 9 Oxidation (M) _LPNNAKLEM(Oxidation (M))_ LPNNAKLEM(1) LPNNAKLEM(80) 0 0 1 ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2715454101562 2 523.270967 1044.52738 0.7491 0.00039198 -0.83964 -0.00043936 -0.09054 -4.7377E-05 523.2709812130297 28.447 0.33441 25.299 25.142 25.476 -3.1482 40 17 3 0 0 0 0.010301 1 15851 15851 79.596 41.445 1 14246000 35617 7902 23709 24166 41903 41903 1340 0.006897928459011382 LPNNAKLEM 9 Unmodified _LPNNAKLEM_ 0 0 0 ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.274169921875 2 515.273509 1028.53247 0.57704 0.00029733 0.37413 0.00019278 0.95117 0.00049011 515.2738508490716 43.771 0.46516 39.007 38.755 39.22 -4.7648 54 28 2 0 0 0 0.05483 1 26596 26596 43.772 10.987 1 28277000 35618 7902 23709 24167 41904 41904 0.019340967085327065 LPNNHIGISF 10 Unmodified _LPNNHIGISF_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2965698242188 2 556.298373 1110.58219 0.47862 0.00026626 1.5656 0.00087092 2.0442 0.0011372 556.8016547542832 58.632 0.42739 58.142 57.883 58.31 -0.49079 37 20 2 0 0 0 0.067957 2 31835 31835;31935 53.833 10.06 1 15105000 35619 16209 23710 24168 41905;41906 41905 0.031325477088330445 LPNNHIGISF 10 Unmodified _LPNNHIGISF_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2980346679688 2 556.298373 1110.58219 0.93694 0.00052122 0.29498 0.0001641 1.2319 0.00068531 556.2982118186923 58.228 0.63171 58.167 57.975 58.607 -0.060722 68 31 4 0 0 0 0.0069983 2 31659 31659;31764 93.166 36.989 1 41319000 35620 16209 23710 24168 41907;41908 41907 0.031325477088330445 LPNNHIGISF 10 Unmodified _LPNNHIGISF_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2991943359375 2 556.298373 1110.58219 1.5063 0.00083795 1.3523 0.00075227 2.8586 0.0015902 556.8012483810879 64.065 0.93041 57.89 57.579 58.509 -6.1757 90 50 2 0 0 0 2.9632E-07 2 41347 41347;41676 139.14 64.209 1 141020000 35621 16209 23710 24168 41909;41910 41909 0.031325477088330445 LPNNIVDVW 9 Unmodified _LPNNIVDVW_ 0 0 0 nc|ENSG00000111802|O95551-3|TDP2;ENSG00000111802|ENST00000378198|TDP2;nc|ENSG00000111802|O95551-2|TDP2 nc|ENSG00000111802|O95551-3|TDP2 nc|ENSG00000111802|O95551-3|TDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2882080078125 2 535.287474 1068.5604 0.63241 0.00033852 0.64263 0.00034399 1.275 0.00068252 535.2878173391651 81.875 0.34256 81.38 81.185 81.528 -0.4952 37 12 4 0 0 0 0.23158 1 44785 44785 20.454 3.5113 1 2414900 35622 2830 23711 24169 41911 41911 0.028857429602794582 LPNNLICLF 9 Carbamidomethyl (C) _LPNNLIC(Carbamidomethyl (C))LF_ LPNNLIC(1)LF LPNNLIC(54)LF 0 1 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3007202148438 2 552.299527 1102.5845 3.7682 0.0020812 -0.53718 -0.00029668 3.231 0.0017845 552.2995156008524 99.429 0.23527 99.393 99.294 99.529 -0.036301 16 8 3 0 0 0 0.03327 1 55226 55226 53.576 17.109 1 3932000 35623 550 23712 24170 41912 41912 38 0.03731260122276581 LPNNSTKIM 9 Oxidation (M) _LPNNSTKIM(Oxidation (M))_ LPNNSTKIM(1) LPNNSTKIM(44) 0 0 1 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MSMS AL20221201_MKP_PDAC_01 4 517.2725219726562 2 517.270967 1032.52738 NaN NaN NaN NaN NaN NaN NaN 24.244 1 21.417 20.917 21.917 -2.8273 0 0 0 0.098496 1 13185 13185 43.772 11.467 1 35624 7325 23713 24171 41913 41913 1264 0.012417928459399263 LPNPLLQSI 9 Unmodified _LPNPLLQSI_ 0 0 0 REV__nc|ENSG00000139292|O75473-3|LGR5 REV__nc|ENSG00000139292|O75473-3|LGR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8005981445312 2 497.800217 993.585882 1.0202 0.00050784 0.77071 0.00038366 1.7909 0.0008915 497.80039272421453 81.008 0.49876 74.832 74.696 75.195 -6.1757 43 28 2 0 0 0 0.23158 1 53198 53198 20.454 1.1966 1 16277000 + 35625 20398 23714 24172 41914 41914 0.08883217482730288 LPNPQENLPDF 11 Unmodified _LPNPQENLPDF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.3181762695312 2 642.31696 1282.61937 0.12117 7.7828E-05 0.57282 0.00036793 0.69398 0.00044576 642.3168170521863 68.066 0.25081 68.066 67.953 68.204 0 20 12 2 0 0 0 0.62338 1 37929 37929 10.151 3.5202 1 864870 35626 4309 23715 24173 41915 41915 -0.010638255360618132 LPNPQENLPDF 11 Unmodified _LPNPQENLPDF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3163452148438 2 642.31696 1282.61937 0.14719 9.4541E-05 0.81736 0.000525 0.96455 0.00061954 642.3169374095801 68.679 0.25523 68.198 68.053 68.309 -0.48071 26 11 3 0 0 0 0.047603 2 37496 37482;37496 51.415 35.266 1 1912900 35627 4309 23715 24173 41916;41917 41917 -0.010638255360618132 LPNPQENLPDF 11 Unmodified _LPNPQENLPDF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3182983398438 2 642.31696 1282.61937 NaN NaN NaN NaN NaN NaN NaN 68.792 1 68.311 67.811 68.811 -0.48071 0 0 0 0.93767 1 37601 37601 4.1895 0.90819 1 35628 4309 23715 24173 41918 41918 -0.010638255360618132 LPNPQENLPDF 11 Unmodified _LPNPQENLPDF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3170166015625 2 642.31696 1282.61937 0.59602 0.00038284 -0.58256 -0.00037419 0.013463 8.6473E-06 642.316522973766 76.132 0.37557 69.956 69.736 70.111 -6.1757 27 20 2 0 0 0 0.00098399 1 49752 49752 83.429 54.347 1 11488000 35629 4309 23715 24173 41919 41919 -0.010638255360618132 LPNQAFSSEL 10 Unmodified _LPNQAFSSEL_ 0 0 0 REV__ENSG00000174306|ENST00000683867|ZHX3 REV__ENSG00000174306|ENST00000683867|ZHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2785034179688 2 553.279846 1104.54514 0.72872 0.00040318 -3.1539 -0.001745 -2.4252 -0.0013418 553.2784826748424 28.429 0.22955 28.367 28.273 28.502 -0.062159 15 8 2 0 0 0 0.5933 1 14737 14737 11.495 1.4208 1 1630400 + 35630 22783 23716 24174 41920 41920 -0.0029516862757645868 LPNQAFSSEL 10 Unmodified _LPNQAFSSEL_ 0 0 0 REV__ENSG00000174306|ENST00000683867|ZHX3 REV__ENSG00000174306|ENST00000683867|ZHX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.279846 1104.54514 0.26153 0.0001447 -1.7362 -0.00096061 -1.4747 -0.00081591 553.2787116378169 28.324 0.16216 28.354 28.262 28.424 0.029564 0.033397 0.00074413 NaN 11.495 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 903070 + 35631 22783 23716 24174 -0.0029516862757645868 LPNQARAQAAL 11 Unmodified _LPNQARAQAAL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3289184570312 2 576.827829 1151.64111 0.40052 0.00023103 0.37014 0.00021351 0.77066 0.00044454 576.8281587264441 31.184 0.17675 31.081 30.959 31.136 -0.10269 8 6 2 0 0 0 0.47137 1 16224 16224 22.736 5.794 1 1158300 35632 3421 23717 24175 41921 41921 0.07135024003196122 LPNQARAQAAL 11 Unmodified _LPNQARAQAAL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 576.827829 1151.64111 0.83492 0.00048161 1.0073 0.00058107 1.8423 0.0010627 576.8294452198111 35.553 0.13962 31.36 31.301 31.44 -4.1928 0.13962 0.0005345 NaN 22.736 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3793600 35633 3421 23717 24175 0.07135024003196122 LPNQLFRTF 9 Unmodified _LPNQLFRTF_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.31640625 2 568.316566 1134.61858 0.54739 0.00031109 -0.46466 -0.00026408 0.082732 4.7018E-05 568.3162710833572 68.016 0.50678 68.041 67.775 68.282 0.025146 64 24 4 0 0 0 0.0084276 2 37446 37339;37446 110.67 89.401 1 25001000 35634 1284 23718 24176 41922;41923 41923 0.056654246055586555 LPNQPQFRHDF 11 Unmodified _LPNQPQFRHDF_ 0 0 0 REV__ENSG00000152382|ENST00000367874|TADA1 REV__ENSG00000152382|ENST00000367874|TADA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.9018249511719 3 466.901954 1397.68403 1.1484 0.00053617 -0.73197 -0.00034176 0.4164 0.00019442 466.9014303910905 54.677 0.41327 54.677 54.398 54.812 0 36 17 3 0 0 0 0.63851 1 30330 30330 7.4771 2.4295 1 3402200 + 35635 21113 23719 24177 41924 41924 0.0010979406060869223 LPNQPQFRHDF 11 Unmodified _LPNQPQFRHDF_ 0 0 0 REV__ENSG00000152382|ENST00000367874|TADA1 REV__ENSG00000152382|ENST00000367874|TADA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.9017944335938 3 466.901954 1397.68403 0.22743 0.00010619 -0.34257 -0.00015995 -0.11514 -5.3758E-05 466.90178112990213 55.17 0.5129 54.692 54.349 54.861 -0.47798 65 24 4 0 0 0 0.68427 1 29886 29886 4.7159 3.2608 1 5050600 + 35636 21113 23719 24177 41925 41925 0.0010979406060869223 LPNQPQFRHDF 11 Unmodified _LPNQPQFRHDF_ 0 0 0 REV__ENSG00000152382|ENST00000367874|TADA1 REV__ENSG00000152382|ENST00000367874|TADA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 466.901954 1397.68403 1.1484 0.00053617 -0.73197 -0.00034176 0.4164 0.00019442 466.9014303910905 54.677 0.41327 54.677 54.398 54.812 0 -0.0074117 -0.00030193 NaN 7.4771 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3402200 + 35637 21113 23719 24177 0.0010979406060869223 LPNRDFAFY 9 Unmodified _LPNRDFAFY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7870483398438 2 571.785099 1141.55564 0.76131 0.0004353 1.7403 0.00099507 2.5016 0.0014304 571.7857170324872 57.816 0.47218 57.75 57.458 57.93 -0.066036 37 23 2 0 0 0 0.20389 2 31511 31412;31511 23.79 6.9067 1 2445700 35638 4653 23720 24178 41926;41927 41927 -0.009471411824733877 LPNRDFAFY 9 Unmodified _LPNRDFAFY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7869262695312 2 571.785099 1141.55564 1.158 0.00066213 4.1045 0.0023469 5.2625 0.003009 571.7865793804337 63.572 0.71778 57.396 57.143 57.861 -6.1757 63 40 2 0 0 0 0.10134 1 41074 41074 34.932 6.4452 1 18583000 35639 4653 23720 24178 41928 41928 -0.009471411824733877 LPNRITLLY 9 Unmodified _LPNRITLLY_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8343505859375 2 551.834591 1101.65463 0.98553 0.00054385 -0.3385 -0.0001868 0.64703 0.00035705 551.8343638935899 66.048 0.32944 66.058 65.873 66.202 0.0095596 46 16 4 0 0 0 0.26811 1 36297 36297 24.991 3.454 1 35105000 35640 3966 23721 24179 41929 41929 0.10786881782428281 LPNRNVFN 8 Unmodified _LPNRNVFN_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2633972167969 2 487.264333 972.514114 0.63356 0.00030871 -1.6084 -0.0007837 -0.97481 -0.00047499 487.2634600205195 59.077 0.44759 59.016 58.7 59.147 -0.060719 33 21 2 0 0 0 0.77907 1 32131 32131 10.183 0 1 4073800 + 35641 19637 23722 24180 41930 41930 0.02675722848857731 LPNRPETSF 9 Unmodified _LPNRPETSF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7734375 2 530.774731 1059.53491 -0.13004 -6.9023E-05 -2.0024 -0.0010628 -2.1324 -0.0011318 530.7736313468467 35.229 0.19609 35.229 35.11 35.306 0 21 9 3 0 0 0 0.010301 1 18583 18583 79.596 37.757 1 6022700 35642 5021 23723 24181 41931 41931 0.007522684378500344 LPNRPETSF 9 Unmodified _LPNRPETSF_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7747192382812 2 530.774731 1059.53491 -0.44677 -0.00023713 -0.46365 -0.00024609 -0.91041 -0.00048322 530.774689745491 35.359 0.19997 35.137 35.045 35.245 -0.2224 21 8 3 0 0 0 0.0047067 1 18507 18507 118.07 63.295 1 4621100 35643 5021 23723 24181 41932 41932 0.007522684378500344 LPNSIASRF 9 Unmodified _LPNSIASRF_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7807312011719 2 502.779816 1003.54508 0.22054 0.00011088 0.71795 0.00036097 0.93849 0.00047185 502.7802721779995 47.758 0.3895 47.405 47.145 47.535 -0.3526 33 18 2 0 0 0 0.01958 2 25566 25566;25667 63.961 19.554 1 6135300 35644 985 23724 24182 41933;41934 41933 0.04344876163099798 LPNSIASRF 9 Unmodified _LPNSIASRF_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7804565429688 2 502.779816 1003.54508 0.68828 0.00034605 0.43281 0.00021761 1.1211 0.00056366 502.78000127327465 47.525 0.52286 47.486 47.138 47.661 -0.038647 78 24 4 0 0 0 0.01958 3 25588 25480;25588;25695 63.961 14.028 1 43652000 35645 985 23724 24182 41935;41936;41937 41936 0.04344876163099798 LPNSIASRF 9 Unmodified _LPNSIASRF_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7802429199219 2 502.779816 1003.54508 1.0296 0.00051766 -0.17142 -8.6189E-05 0.85817 0.00043147 502.7796016959884 52.974 0.56392 47.17 46.855 47.419 -5.8042 81 31 3 0 0 0 0.0086209 3 33426 33313;33426;33543 89.401 39.468 1 146220000 35646 985 23724 24182 41938;41939;41940 41939 0.04344876163099798 LPNSLIQI 8 Unmodified _LPNSLIQI_ 0 0 0 REV__ENSG00000146433|ENST00000684151|TMEM181 REV__ENSG00000146433|ENST00000684151|TMEM181 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2744140625 2 449.273835 896.533118 NaN NaN NaN NaN NaN NaN NaN 74.744 1 74.268 73.768 74.768 -0.47588 0 0 0 0.95607 1 40908 40908 9.3474 0 1 + 35647 20835 23725 24183 41941 41941 0.08071259419921262 LPNSPGSTF 9 Unmodified _LPNSPGSTF_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENST00000483876.1_1_10:105833772-105837213:-|nuORF ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2301940917969 2 460.229625 918.444697 0.032699 1.5049E-05 1.2603 0.00058003 1.293 0.00059508 460.2303073333681 43.071 0.2977 42.761 42.587 42.885 -0.31039 20 13 2 0 0 0 0.06294 1 22894 22894 41.84 3.8656 1 5995100 35648 912 23726 24184 41942 41942 -0.017787808905495694 LPNSPGSTF 9 Unmodified _LPNSPGSTF_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENST00000483876.1_1_10:105833772-105837213:-|nuORF ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MSMS AL20221201_MKP_PDAC_01 4 460.2311096191406 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 49.795 1 44.256 43.756 44.756 -5.5391 0 0 0 0.074615 1 31148 31148 49.933 7.8384 1 35649 912 23726 24184 41943 41943 -0.017787808905495694 LPNSPGSTF 9 Unmodified _LPNSPGSTF_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1;ENST00000483876.1_1_10:105833772-105837213:-|nuORF ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 460.229625 918.444697 1.3176 0.00060639 -0.31685 -0.00014583 1.0007 0.00046057 460.23010023112585 42.765 0.36485 42.765 42.524 42.889 0 0.0023463 -0.0010232 NaN 41.84 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 6555200 35650 912 23726 24184 -0.017787808905495694 LPNSSIIPD 9 Unmodified _LPNSSIIPD_ 0 0 0 REV__ENSG00000178177|ENST00000635767|LCORL REV__ENSG00000178177|ENST00000635767|LCORL MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.257080078125 2 478.258382 954.502212 0.72646 0.00034743 -0.48532 -0.00023211 0.24114 0.00011533 478.25815331907575 66.941 0.55063 60.766 60.58 61.13 -6.1757 47 30 2 0 0 0 0.0083938 2 43542 43542;43686 108 46.64 1 21093000 + 35651 23025 23727 24185 41944;41945 41944 0.023140613150076206 LPNSTERAVTI 11 Unmodified _LPNSTERAVTI_ 0 0 0 nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF nc|ENSG00000183570|P57721-2|PCBP3 nc|ENSG00000183570|P57721-2|PCBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.833251953125 2 600.832777 1199.651 -0.086735 -5.2113E-05 0.84008 0.00050475 0.75335 0.00045264 600.8333273741775 39.931 0.34935 39.931 39.74 40.089 0 46 17 4 0 0 0 0.053529 2 21367 21367;21481 38.615 4.4306 1 6576100 35652 9160 23728 24186 41946;41947 41946 0.05916167217901602 LPNSVTPP 8 Unmodified _LPNSVTPP_ 0 0 0 nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;ENST00000565194.1_1_16:74876504-74877090:+|nuORF;nc|ENSG00000103091|Q6PJI9-3|WDR59 nc|ENSG00000103091|Q6PJI9-2|WDR59 nc|ENSG00000103091|Q6PJI9-2|WDR59 MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.4518432617188 1 824.451245 823.443968 0.76454 0.00063032 -0.23505 -0.00019379 0.52948 0.00043653 824.4509702357585 84.321 0.61105 78.145 77.818 78.429 -6.1757 84 34 3 0 0 0 0.13832 1 55543 55543 89.427 3.3055 1 63694000 35653 2102 23729 24187 41948 41948 0.025184244603906336 LPNTMNAAEI 10 Unmodified _LPNTMNAAEI_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF ENST00000444561.2_1_17:43710417-43713807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2711791992188 2 537.268424 1072.5223 0.48419 0.00026014 0.80596 0.00043302 1.2902 0.00069316 537.2687795732053 49.297 1.2176 48.926 48.335 49.552 -0.37172 225 61 5 0 0 0 0.44373 1 26861 26861 19.257 1.122 1 140200000 35654 13440 23730 24188 41949 41949 -0.011065110167010062 LPNTSVVIV 9 Unmodified _LPNTSVVIV_ 0 0 0 nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13 nc|ENSG00000144278|Q8IUC8-2|GALNT13 nc|ENSG00000144278|Q8IUC8-2|GALNT13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2869262695312 2 471.286943 940.559333 0.5362 0.0002527 0.58479 0.0002756 1.121 0.00052831 471.28713390067537 61.072 0.41655 61.072 60.838 61.254 0 31 17 3 0 0 0 0.14 1 34022 34022 29.082 2.1979 1 1452500 35655 5596 23731 24189 41950 41950 0.08667528591388418 LPNTSVVIV 9 Unmodified _LPNTSVVIV_ 0 0 0 nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13 nc|ENSG00000144278|Q8IUC8-2|GALNT13 nc|ENSG00000144278|Q8IUC8-2|GALNT13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2868957519531 2 471.286943 940.559333 0.78568 0.00037028 0.05716 2.6939E-05 0.84284 0.00039722 471.2869137080798 68.635 0.46671 62.459 62.187 62.654 -6.1757 58 26 3 0 0 0 0.039985 1 44662 44662 49.933 0 1 40269000 35656 5596 23731 24189 41951 41951 0.08667528591388418 LPNTTLTYD 9 Unmodified _LPNTTLTYD_ 0 0 0 nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2 nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2 nc|ENSG00000163873|Q13003-2|GRIK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2607421875 2 519.261122 1036.50769 0.14607 7.5851E-05 0.27162 0.00014104 0.41769 0.00021689 519.2613110771674 44.225 0.1944 44.225 44.111 44.305 0 16 9 2 0 0 0 0.12424 1 24044 24044 30.637 0 1 8101800 35657 7088;7193 23732 24190 41952 41952 -0.00910259893203147 LPNVNAAIL 9 Unmodified _LPNVNAAIL_ 0 0 0 ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1;ENST00000506450.1_1_4:25624416-25624897:+|nuORF ENSG00000113558|ENST00000353411|SKP1 ENSG00000113558|ENST00000353411|SKP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7801513671875 2 462.779285 923.544017 0.010345 4.7874E-06 0.24354 0.00011271 0.25389 0.00011749 462.7794635153434 70.385 0.19655 69.906 69.738 69.934 -0.47903 11 8 2 0 0 0 0.095405 1 38461 38461 34.102 3.4659 1 1274200 35658 2975 23733 24191 41953 41953 0.0791866179419003 LPNVPSIAL 9 Unmodified _LPNVPSIAL_ 0 0 0 nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000101421|ENST00000217402|CHMP4B nc|ENSG00000258469|P59074|CHMP4BP1 nc|ENSG00000258469|P59074|CHMP4BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2833557128906 2 462.28166 922.548768 1.041 0.00048124 0.21577 9.9745E-05 1.2568 0.00058098 462.2816791798648 87.542 0.38733 81.367 81.182 81.57 -6.1757 36 20 2 0 0 0 0.039985 1 57707 57707 49.933 9.9757 1 13655000 35659 1964 23734 24192 41954 41954 0.0843954593693752 LPNWLINSY 9 Unmodified _LPNWLINSY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2951049804688 2 560.295299 1118.57605 0.20437 0.00011451 -0.32019 -0.0001794 -0.11583 -6.4896E-05 560.79623705417 85.042 0.21039 85.105 84.978 85.189 0.063171 19 8 3 0 0 0 0.016184 1 47070 47070 67.344 50.402 1 11260000 35660 583 23735 24193 41955 41955 0.02150029477343196 LPNWLINSY 9 Unmodified _LPNWLINSY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2977294921875 2 560.295299 1118.57605 1.2308 0.00068961 0.51618 0.00028921 1.747 0.00097882 560.2954649863417 94.743 0.79836 88.567 88.151 88.949 -6.1757 97 45 3 0 0 0 0.0082281 2 62590 62590;62706 92.822 50.728 1 37407000 35661 583 23735 24193 41956;41957 41956 0.02150029477343196 LPNYEDVATF 10 Unmodified _LPNYEDVATF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20221201_MKP_PDAC_01 4 584.7788696289062 2 584.779679 1167.5448 NaN NaN NaN NaN NaN NaN NaN 75.858 1 69.683 69.183 70.183 -6.1757 0 0 0 0.80141 1 49617 49617 12.241 1.4167 1 35662 5575 23736 24194 41958 41958 -0.03226588347456527 LPNYRIHQHY 10 Unmodified _LPNYRIHQHY_ 0 0 0 REV__ENST00000485531.1_1_9:34646906-34647264:+|nuORF REV__ENST00000485531.1_1_9:34646906-34647264:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8465576171875 2 670.846553 1339.67855 0.73631 0.00049395 1.1587 0.00077734 1.8951 0.0012713 670.8472587342715 75.367 0.32223 74.89 74.74 75.062 -0.47714 47 18 3 0 0 0 0.60623 1 41218 41218 10.824 3.215 1 6551600 + 35663 27780 23737 24195 41959 41959 0.022301152688214643 LPPAHRYNW 9 Unmodified _LPPAHRYNW_ 0 0 0 REV__AluSz_dup37824|chr7:44800399-44800695:-|1.0930302983748037|0.0026438264880892|8.69|177.0|16|3|anti-sense REV__AluSz_dup37824|chr7:44800399-44800695:-|1.0930302983748037|0.0026438264880892|8.69|177.0|16|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7734375 2 577.298707 1152.58286 0.30155 0.00017408 -0.47381 -0.00027353 -0.17226 -9.9445E-05 577.799548602954 54.996 0.17854 54.518 54.429 54.607 -0.47798 14 8 2 0 0 0 0.19891 1 29803 29803 11.64 0 1 1169600 + 35664 16719 23738 24196 41960 41960 0.012673871485503696 LPPAREGHPVY 11 Unmodified _LPPAREGHPVY_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5561828613281 3 412.555895 1234.64586 0.60782 0.00025076 0.13117 5.4115E-05 0.73899 0.00030488 412.5558681858132 27.786 0.37781 24.749 24.541 24.919 -3.0365 31 19 3 0 0 0 0.35681 2 15370 15370;15487 19.144 2.5781 1 10327000 35665 6157 23739 24197 41961;41962 41961 0.03791908145967682 LPPAREGHPVY 11 Unmodified _LPPAREGHPVY_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 412.555895 1234.64586 -0.46356 -0.00019125 0.66853 0.00027581 0.20497 8.4562E-05 412.556060093766 24.622 0.60264 24.622 24.301 24.904 0 -0.063899 0.0002477 NaN 19.144 55 32 2 NaN NaN NaN NaN 0 NaN NaN 0 1134600 35666 6157 23739 24197 0.03791908145967682 LPPDARRRKTP 11 Unmodified _LPPDARRRKTP_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2618408203125 3 436.261594 1305.76295 0.80834 0.00035265 -0.19333 -8.4342E-05 0.61501 0.0002683 436.2615362940594 35.285 0.51345 31.19 30.935 31.449 -4.0951 112 30 5 0 0 0 0.61059 1 20584 20584 5.8681 1.462 1 218570000 35667 7258;30165 23740 24198 41963 41963 0.12230066085544422 LPPDLNRNH 9 Unmodified _LPPDLNRNH_ 0 0 0 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 ENSG00000198873|ENST00000392870|GRK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2839965820312 2 538.285797 1074.55704 0.58754 0.00031626 0.66988 0.00036059 1.2574 0.00067685 538.2863815627461 52.343 0.5474 52.284 51.939 52.486 -0.058918 38 26 2 0 0 0 0.15471 1 28305 28305 27.629 4.4804 1 2417700 35668 10180 23741 24199 41964 41964 0.022744929062810115 LPPEAPLSSEL 11 Unmodified _LPPEAPLSSEL_ 0 0 0 ENST00000535871.1_1_12:6958551-6959649:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;ENST00000536241.1_1_12:6958687-6959760:-|nuORF;ENST00000545368.5_1_12:6958360-6960430:-|nuORF;ENSG00000111665|ENST00000538862|CDCA3 ENST00000535871.1_1_12:6958551-6959649:-|nuORF ENST00000535871.1_1_12:6958551-6959649:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8118286132812 2 576.810979 1151.6074 NaN NaN NaN NaN NaN NaN NaN 56.87 1 56.801 56.301 57.301 -0.068737 0 0 0 0.77961 1 30945 30945 13.042 0.51092 1 35669 2808 23742 24200 41965 41965 0.03766557720769015 LPPEFIHLY 9 Unmodified _LPPEFIHLY_ 0 0 0 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.810302734375 2 564.808042 1127.60153 0.89648 0.00050634 -0.3895 -0.00021999 0.50697 0.00028634 564.8077902092883 75.395 0.74175 74.918 74.559 75.301 -0.47714 70 37 2 0 0 0 0.14602 1 41128 41128 28.487 6.7402 1 2330400 35670 6584 23743 24201 41966 41966 0.0428350399977262 LPPEFIHLY 9 Unmodified _LPPEFIHLY_ 0 0 0 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 ENSG00000158435|ENST00000289382|CNOT11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.808042 1127.60153 0.59085 0.00033372 0.96923 0.00054743 1.5601 0.00088115 564.8081614500087 74.842 0.47485 74.888 74.573 75.048 0.045959 -0.014979 0.0012077 NaN 28.487 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2516900 35671 6584 23743 24201 0.0428350399977262 LPPEQFEKY 9 Unmodified _LPPEQFEKY_ 0 0 0 ENSG00000162735|ENST00000368072|PEX19 ENSG00000162735|ENST00000368072|PEX19 ENSG00000162735|ENST00000368072|PEX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.791259765625 2 575.792589 1149.57063 0.0091013 5.2404E-06 -0.61553 -0.00035442 -0.60643 -0.00034918 575.7923742680005 41.737 0.40432 41.737 41.607 42.011 0 47 20 3 0 0 0 0.047714 2 22630 22520;22630 45.74 16.658 1 6829700 35672 6903 23744 24202 41967;41968 41968 0.0018230589485028759 LPPEQFEKY 9 Unmodified _LPPEQFEKY_ 0 0 0 ENSG00000162735|ENST00000368072|PEX19 ENSG00000162735|ENST00000368072|PEX19 ENSG00000162735|ENST00000368072|PEX19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7926635742188 2 575.792589 1149.57063 1.2915 0.00074364 -0.40335 -0.00023225 0.88816 0.00051139 575.792235059052 47.386 0.76291 42.152 41.836 42.599 -5.2339 78 48 2 0 0 0 0.013609 4 29469 29207;29335;29469;29600 70.332 34.837 1 22154000 35673 6903 23744 24202 41969;41970;41971;41972 41971 0.0018230589485028759 LPPESVKV 8 Unmodified _LPPESVKV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2837524414062 2 434.760561 867.506569 0.82506 0.0003587 4.119 0.0017908 4.9441 0.0021495 434.76118023538413 52.316 0.079762 52.257 52.229 52.309 -0.058918 5 3 2 0 0 0 8.7369 1 28364 28364 14.582 0 1 897200 + 35674 21279 23745 24203 41973 41973 0.06751570528581397 LPPETQTCRL 10 Unmodified _LPPETQTCRL_ 0 0 0 ENST00000307602.8_1_8:42881771-42881993:+|nuORF ENST00000307602.8_1_8:42881771-42881993:+|nuORF ENST00000307602.8_1_8:42881771-42881993:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.298095703125 2 579.302798 1156.59104 0.042586 2.467E-05 -1.4263 -0.00082627 -1.3837 -0.0008016 579.8040671004924 69.346 0.3658 68.867 68.698 69.064 -0.47903 33 15 3 0 0 0 0.66569 1 37868 37868 6.7232 1.4925 1 1494800 35675 11642 23746 24204 41974 41974 0.019011532830063516 LPPFIWTL 8 Unmodified _LPPFIWTL_ 0 0 0 ENST00000471365.1_1_10:38658087-38667032:+|nuORF;nc|ENSG00000132196|P56937-2|HSD17B7;ENSG00000132196|ENST00000254521|HSD17B7 ENST00000471365.1_1_10:38658087-38667032:+|nuORF ENST00000471365.1_1_10:38658087-38667032:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7913513183594 2 493.789121 985.56369 0.69478 0.00034307 1.5878 0.00078404 2.2826 0.0011271 493.79102021712737 101.87 0.07251 95.697 95.662 95.735 -6.1757 5 3 2 0 0 0 0.57408 1 68400 68400 28.173 5.0248 1 4360200 35676 4378 23747 24205 41975 41975 0.07033037804944797 LPPFPPGM 8 Unmodified _LPPFPPGM_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2249145507812 2 428.2253 854.436046 NaN NaN NaN NaN NaN NaN NaN 33.388 1 33.417 32.917 33.917 0.028934 0 0 0 0.97444 1 17563 17563 2.8892 0.82947 1 35677 6845 23748 24206 41976 41976 0.003005739392619944 LPPFRKPQ 8 Unmodified _LPPFRKPQ_ 0 0 0 TP53BP2-CAPN2|1|fusion;TP53BP2-CAPN2|2|fusion;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;TP53BP2|p.V610M|1|0.04|ENSG00000143514|chr1:223798335-223798335|C/T|missense_variant TP53BP2-CAPN2|1|fusion TP53BP2-CAPN2|1|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2694396972656 2 491.795269 981.575986 0.8397 0.00041296 0.072747 3.5777E-05 0.91245 0.00044874 491.79572878057405 42.867 0.28411 42.867 42.682 42.966 0 25 14 2 0 0 0 8.7369 1 23228 23228 5.2307 0 1 4226600 35678 30197 23749 24207 41977 41977 0.08446074267999393 LPPFSQVF 8 Unmodified _LPPFSQVF_ 0 0 0 ENST00000570784.1_1_17:7836105-7836449:+|nuORF;ENST00000380262.7_1_17:7836176-7836449:+|nuORF ENST00000570784.1_1_17:7836105-7836449:+|nuORF ENST00000570784.1_1_17:7836105-7836449:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 467.7565612792969 2 467.755278 933.496004 NaN NaN NaN NaN NaN NaN NaN 96.936 1 90.761 90.261 91.261 -6.1757 0 0 0 0.37735 1 64242 64242 56.541 0 1 35679 12593 23750 24208 41978 41978 0.026595878741545675 LPPGPGPF 8 Unmodified _LPPGPGPF_ 0 0 0 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 ENSG00000177465|ENST00000326303|ACOT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.21533203125 2 391.215789 780.417025 1.3119 0.00051323 0.59091 0.00023117 1.9028 0.0007444 391.21595141009186 48.424 0.43295 43.19 42.988 43.421 -5.2339 46 25 2 0 0 0 0.80044 1 30067 30067 6.3541 0 1 34884000 35680 8686 23751 24209 41979 41979 0.01803360639848961 LPPGSVISY 9 Unmodified _LPPGSVISY_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7585144042969 2 466.758018 931.501483 0.73925 0.00034505 -0.61307 -0.00028616 0.12618 5.8894E-05 466.7579517823348 54.813 0.77402 54.813 54.419 55.193 0 47 33 2 0 0 0 0.12841 1 30550 30550 30.225 7.0764 1 1993100 35681 9032 23752 24210 41980 41980 0.03299266665953837 LPPGSVISY 9 Unmodified _LPPGSVISY_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7581176757812 2 466.758018 931.501483 0.27825 0.00012987 -0.086076 -4.0176E-05 0.19217 8.9697E-05 466.7579814709796 55.485 1.091 55.007 54.429 55.52 -0.47798 129 52 3 0 0 0 0.0086179 4 30070 29963;30070;30178;30287 89.427 31.955 1 8303900 35682 9032 23752 24210 41981;41982;41983;41984 41982 0.03299266665953837 LPPGSVISY 9 Unmodified _LPPGSVISY_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.5087890625 1 932.50876 931.501483 0.30441 0.00028387 0.24449 0.00022799 0.5489 0.00051186 932.5091658632379 55.411 0.93064 54.933 54.528 55.459 -0.47798 87 44 3 0 0 0 0.0083087 3 29998 29998;30105;30211 97.075 52.668 1 3333900 35683 9032 23752 24210 41985;41986;41987 41985 0.03299266665953837 LPPGSVISY 9 Unmodified _LPPGSVISY_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7594299316406 2 466.758018 931.501483 1.327 0.00061938 0.14755 6.8872E-05 1.4745 0.00068825 466.75800917794646 63.005 1.0409 56.83 56.265 57.306 -6.1757 131 55 3 0 0 0 0.010877 5 40415 40415;40541;40682;40831;40983 77.984 27.129 1 82966000 35684 9032 23752 24210 41988;41989;41990;41991;41992 41988 0.03299266665953837 LPPGSVISY 9 Unmodified _LPPGSVISY_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.5111694335938 1 932.50876 931.501483 1.3768 0.0012839 -0.12132 -0.00011313 1.2555 0.0011707 932.5085042194765 63.02 0.77852 56.844 56.398 57.177 -6.1757 73 40 2 0 0 0 0.0077963 4 40455 40455;40590;40718;40847 109.63 56.054 1 22626000 35685 9032 23752 24210 41993;41994;41995;41996 41993 0.03299266665953837 LPPGVHISY 9 Unmodified _LPPGVHISY_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000548269.1_1_12:53587490-53588125:-|nuORF nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2664794921875 2 491.77146 981.528367 0.91001 0.00044752 1.5317 0.00075327 2.4418 0.0012008 491.77223326184446 49.565 0.84839 49.173 48.778 49.627 -0.3923 82 42 3 0 0 0 0.17275 1 26736 26736 21.747 3.6117 1 5265900 35686 5172 23753 24211 41997 41997 0.03686375277140996 LPPGVRHF 8 Unmodified _LPPGVRHF_ 0 0 0 REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158 REV__nc|ENSG00000249992|Q8WZ71-2|TMEM158 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7348327636719 2 461.766512 921.518471 0.70885 0.00032732 -0.024646 -1.1381E-05 0.6842 0.00031594 461.76639080020135 39.311 0.31496 39.311 39.154 39.469 0 34 14 4 0 0 0 8.7369 1 21154 21154 5.7604 3.4577 1 8092400 + 35687 24497 23754 24212 41998 41998 0.05457232062417461 LPPHHPGATQP 11 Unmodified _LPPHHPGATQP_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7941284179688 2 576.301447 1150.58834 2.2246 0.001282 -1.951 -0.0011244 0.27355 0.00015765 576.3000068248932 94.668 0.27913 94.682 94.568 94.847 0.014244 26 10 3 0 0 0 0.29414 1 52590 52590 10.074 0 1 3098400 35688 1726 23755 24213 41999 41999 0.019070659403723766 LPPHPRYHPG 10 Unmodified _LPPHPRYHPG_ 0 0 0 ENST00000307522.3_1_19:46916116-46916440:-|nuORF ENST00000307522.3_1_19:46916116-46916440:-|nuORF ENST00000307522.3_1_19:46916116-46916440:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.877197265625 3 390.87708 1169.60941 0.01566 6.1212E-06 1.1262 0.00044022 1.1419 0.00044634 390.8773183382804 51.79 0.48671 51.731 51.474 51.961 -0.058914 76 23 4 0 0 0 0.71123 1 28065 28065 0.69767 0.07084 1 8520400 35689 11638 23756 24214 42000 42000 0.03139076039883548 LPPILLPPGSI 11 Unmodified _LPPILLPPGSI_ 0 0 0 REV__ENST00000480873.1_1_2:165600108-165630227:-|nuORF REV__ENST00000480873.1_1_2:165600108-165630227:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.9067687988281 3 372.905754 1115.69543 1.6266 0.00060656 0.080429 2.9993E-05 1.707 0.00063656 372.90568682445587 88.64 1.0291 82.464 81.993 83.022 -6.1757 144 57 3 0 0 0 0.59643 1 58836 58836 11.518 1.3673 1 35406000 + 35690 27681 23757 24215 42001 42001 0.14221223102049407 LPPKIVIGY 9 Unmodified _LPPKIVIGY_ 0 0 0 ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENSG00000151247|ENST00000450253|EIF4E ENSG00000151247|ENST00000450253|EIF4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.3148193359375 2 500.315503 998.616454 0.043987 2.2007E-05 0.10158 5.082E-05 0.14556 7.2828E-05 500.31546327203307 58.299 0.53454 57.809 57.658 58.193 -0.49079 39 25 2 0 0 0 0.28047 1 31716 31716 18.135 2.2878 1 1578600 35691 6101 23758 24216 42002 42002 0.11708995867752492 LPPKIVIGY 9 Unmodified _LPPKIVIGY_ 0 0 0 ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENSG00000151247|ENST00000450253|EIF4E ENSG00000151247|ENST00000450253|EIF4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3159484863281 2 500.315503 998.616454 0.79694 0.00039872 0.099576 4.9819E-05 0.89652 0.00044854 500.3154074421865 57.693 0.55357 57.627 57.14 57.694 -0.066036 59 27 3 0 0 0 0.022193 3 31343 31182;31237;31343 61.357 23.383 1 12197000 35692 6101 23758 24216 42003;42004;42005 42005 0.11708995867752492 LPPKIVIGY 9 Unmodified _LPPKIVIGY_ 0 0 0 ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENSG00000151247|ENST00000450253|EIF4E ENSG00000151247|ENST00000450253|EIF4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3158874511719 2 500.315503 998.616454 0.76128 0.00038088 0.056263 2.8149E-05 0.81754 0.00040903 500.31538745434113 57.997 1.1794 57.931 57.675 58.855 -0.066036 123 59 3 0 0 0 0.013323 6 31720 31509;31619;31720;31819;31923;32026 71.134 25.113 1 16376000 35693 6101 23758 24216 42006;42007;42008;42009;42010;42011 42008 0.11708995867752492 LPPKIVIGY 9 Unmodified _LPPKIVIGY_ 0 0 0 ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E ENSG00000151247|ENST00000450253|EIF4E ENSG00000151247|ENST00000450253|EIF4E MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3175964355469 2 500.315503 998.616454 1.4723 0.0007366 0.71587 0.00035816 2.1881 0.0010948 500.31589745300516 64.041 1.3647 57.865 57.405 58.77 -6.1757 133 74 2 0 0 0 0.013323 6 41312 41312;41452;41589;41726;41860;42016 71.134 29.052 1 89386000 35694 6101 23758 24216 42012;42013;42014;42015;42016;42017 42012 0.11708995867752492 LPPKTYEGSF 10 Unmodified _LPPKTYEGSF_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2872924804688 2 569.792589 1137.57063 0.57305 0.00032652 -1.3409 -0.00076402 -0.76782 -0.0004375 569.7918128185551 74.468 0.10957 74.468 74.41 74.52 0 7 4 2 0 0 0 0.23566 1 41453 41453 7.2892 0 1 587220 35695 16016;398 23759 24217 42018 42018 0.0073430589486633835 LPPLDRIAK 9 Unmodified _LPPLDRIAK_ 0 0 0 REV__ENSG00000136040|ENST00000258526|PLXNC1 REV__ENSG00000136040|ENST00000258526|PLXNC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2630004882812 2 511.821484 1021.62842 0.36469 0.00018666 1.2904 0.00066046 1.6551 0.00084712 511.8221244041407 66.76 0.64723 60.585 60.315 60.962 -6.1757 85 36 3 0 0 0 0.19205 1 43715 43715 14.838 0 1 34117000 + 35696 20130 23760 24218 42019 42019 0.11846612610952434 LPPLPKRPAL 10 Unmodified _LPPLPKRPAL_ 0 0 0 nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000152601|Q9NR56|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 nc|ENSG00000152601|Q9NR56-3|MBNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.9099426269531 3 367.90961 1100.707 1.259 0.0004632 -0.43726 -0.00016087 0.82175 0.00030233 367.90943947846336 46.786 0.37112 46.752 46.548 46.919 -0.033421 43 17 3 0 0 0 0.18021 1 25182 25182 24.882 15.905 1 5753400 35697 6202 23761 24219 42020 42020 0.160674649160228 LPPMDDEDF 9 Unmodified _LPPMDDEDF_ 0 0 0 NRXN2|p.T1508M|1|0.09|ENSG00000110076|chr11:64607812-64607812|G/A|missense_variant NRXN2|p.T1508M|1|0.09|ENSG00000110076|chr11:64607812-64607812|G/A|missense_variant NRXN2|p.T1508M|1|0.09|ENSG00000110076|chr11:64607812-64607812|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7273559570312 2 539.723515 1077.43248 NaN NaN NaN NaN NaN NaN NaN 86.487 1 85.984 85.484 86.484 -0.50318 0 0 0 0.84369 1 47322 47322 2.3027 1.5091 1 35698 16677 23762 24220 42021 42021 -0.10314185415927568 LPPNTIMEY 9 Oxidation (M) _LPPNTIM(Oxidation (M))EY_ LPPNTIM(1)EY LPPNTIM(76)EY 0 0 1 nc|ENSG00000135930|O60573-2|EIF4E2;ENSG00000135930|ENST00000258416|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.265625 2 547.26535 1092.51615 0.49938 0.0002733 -0.13038 -7.1353E-05 0.369 0.00020194 547.2652623356969 45.796 0.9947 45.796 45.396 46.391 0 139 50 6 0 0 0 0.011671 4 24829 24829;24940;25053;25167 75.761 37.787 1 37206000 35699 4762 23763 24221 42022;42023;42024;42025 42022 865 -0.026410292482069053 LPPNTIMEY 9 Oxidation (M) _LPPNTIM(Oxidation (M))EY_ LPPNTIM(1)EY LPPNTIM(59)EY 0 0 1 nc|ENSG00000135930|O60573-2|EIF4E2;ENSG00000135930|ENST00000258416|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2648315429688 2 547.26535 1092.51615 0.57984 0.00031733 0.76527 0.0004188 1.3451 0.00073613 547.2659463386433 53.224 0.58111 47.419 47.234 47.815 -5.8042 69 36 3 0 0 0 0.024882 1 33545 33545 58.679 32.338 1 46439000 35700 4762 23763 24221 42026 42026 865 -0.026410292482069053 LPPNTIMEY 9 Unmodified _LPPNTIMEY_ 0 0 0 nc|ENSG00000135930|O60573-2|EIF4E2;ENSG00000135930|ENST00000258416|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 nc|ENSG00000135930|O60573-2|EIF4E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2687377929688 2 539.267893 1076.52123 0.60608 0.00032684 0.2533 0.0001366 0.85938 0.00046344 539.2677629837929 67.368 0.74023 61.192 60.843 61.583 -6.1757 104 41 3 0 0 0 0.011968 2 43820 43820;43943 74.929 48.045 1 53155000 35701 4762 23763 24222 42027;42028 42027 -0.013967253855980744 LPPNVLLV 8 Unmodified _LPPNVLLV_ 0 0 0 ENST00000494150.1_1_22:39478019-39478325:+|nuORF ENST00000494150.1_1_22:39478019-39478325:+|nuORF ENST00000494150.1_1_22:39478019-39478325:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8851928710938 2 432.781296 863.54804 NaN NaN NaN NaN NaN NaN NaN 92.616 1 86.44 85.94 86.94 -6.1757 0 0 0 0.80403 1 61253 61253 23.148 1.4018 1 35702 14329 23764 24223 42029 42029 0.11080751287897783 LPPPASLFPL 10 Unmodified _LPPPASLFPL_ 0 0 0 REV__ENST00000526104.5_2_11:208097-208547:+|nuORF REV__ENST00000526104.5_2_11:208097-208547:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2100219726562 3 351.211066 1050.61137 -0.19835 -6.9664E-05 -2.1277 -0.00074727 -2.3261 -0.00081694 351.210136419919 35.606 0.16877 35.631 35.494 35.663 0.024967 11 7 2 0 0 0 0.6606 1 18833 18833 3.8763 0 1 2368300 + 35703 28361 23765 24224 42030 42030 0.08808692005140983 LPPPETPPDI 10 Unmodified _LPPPETPPDI_ 0 0 0 REV__ENSG00000050327|ENST00000056217|ARHGEF5 REV__ENSG00000050327|ENST00000056217|ARHGEF5 MSMS AL20221201_MKP_PDAC_01 4 538.2870483398438 2 538.28714 1074.55973 NaN NaN NaN NaN NaN NaN NaN 17.556 1 14.969 14.469 15.469 -2.5866 0 0 0 0.95103 1 9191 9191 5.7319 1.7875 1 + 35704 17258 23766 24225 42031 42031 0.02542903520566142 LPPPGEDLV 9 Unmodified _LPPPGEDLV_ 0 0 0 ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF ENSG00000187535|ENST00000426508|IFT140 ENSG00000187535|ENST00000426508|IFT140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7552185058594 2 468.755475 935.496398 0.55103 0.0002583 -1.785 -0.00083675 -1.234 -0.00057845 468.7546945408507 61.265 0.29411 61.265 61.095 61.389 0 20 12 2 0 0 0 0.5029 1 34146 34146 7.2892 0.56607 1 687960 35705 9562 23767 24226 42032 42032 0.02606962803326951 LPPPKEYQQ 9 Unmodified _LPPPKEYQQ_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3004760742188 2 550.292756 1098.57096 1.1205 0.00061661 -0.63719 -0.00035064 0.48333 0.00026597 550.2924689046671 33.561 0.84899 29.576 29.284 30.133 -3.9853 130 47 4 0 0 0 0.069655 1 19558 19558 43.858 13.222 1 432770000 + 35706 21061 23768 24227 42033 42033 0.025617256147143053 LPPPPAPETY 10 Unmodified _LPPPPAPETY_ 0 0 0 nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;ENST00000307714.12_1_1:32479575-32503673:+|nuORF nc|ENSG00000121774|Q07666-3|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2816162109375 2 541.281857 1080.54916 0.4391 0.00023767 -0.40306 -0.00021817 0.036036 1.9506E-05 541.281235088956 46.711 0.48828 46.711 46.369 46.858 0 49 22 3 0 0 0 0.10406 2 25455 25455;25572 64.236 35.749 1 2136000 35707 3599 23769 24228 42034;42035 42034 0.012109208661513549 LPPPPMCSVHP 11 Unmodified _LPPPPMCSVHP_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.791259765625 2 587.791012 1173.56747 0.65782 0.00038666 -0.058979 -3.4667E-05 0.59884 0.00035199 587.7913708553738 74.375 0.58801 73.899 73.714 74.302 -0.47588 49 24 3 0 0 0 0.65108 1 40665 40665 8.7454 0 1 2744400 35708 5652 23770 24229 42036 42036 -0.012369837551432283 LPPPPMCSVHP 11 Unmodified _LPPPPMCSVHP_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 587.791012 1173.56747 0.43451 0.0002554 1.9848 0.0011666 2.4193 0.001422 587.7919596413135 73.917 0.28043 73.917 73.713 73.994 0 0.008821 0.0021471 NaN 8.7454 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 433330 35709 5652 23770 24229 -0.012369837551432283 LPPPPMCSVHP 11 Unmodified _LPPPPMCSVHP_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 587.791012 1173.56747 0.65782 0.00038666 -0.058979 -3.4667E-05 0.59884 0.00035199 587.7913708553738 74.375 0.58801 73.899 73.714 74.302 -0.47588 -0.008821 -0.00025548 NaN 8.7454 49 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2744400 35710 5652 23770 24229 -0.012369837551432283 LPPPQQPQ 8 Unmodified _LPPPQQPQ_ 0 0 0 ENST00000557932.5_1_15:102513813-102516466:+|nuORF;ENST00000400706.3_1_12:88275-90926:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;nc|ENSG00000234769|A8MWX3|WASH4P ENST00000557932.5_1_15:102513813-102516466:+|nuORF ENST00000557932.5_1_15:102513813-102516466:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 452.2193298339844 2 452.747985 903.481417 1.3284 0.00060141 0.26572 0.00012031 1.5941 0.00072172 452.74807437171654 35.771 0.48561 31.578 31.351 31.837 -4.1928 89 30 4 0 0 0 8.7369 1 20874 20874 14.582 1.0738 1 77483000 35711 8970 23771 24230 42037 42037 0.02581515726001271 LPPPQTAHRNY 11 Unmodified _LPPPQTAHRNY_ 0 0 0 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 nc|ENSG00000115109|Q9HCM4-2|EPB41L5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8954467773438 3 431.894799 1292.66257 1.2815 0.00055347 -0.74947 -0.00032369 0.53202 0.00022978 431.89448667168904 20.953 0.53056 18.26 17.977 18.507 -2.693 67 31 3 0 0 0 0.22582 1 11140 11140 25.155 16.403 1 4665200 35712 16135 23772 24231 42038 42038 0.02794409031912437 LPPPSDPQY 9 Unmodified _LPPPSDPQY_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2503356933594 2 507.250557 1012.48656 -0.025525 -1.2948E-05 0.21523 0.00010918 0.1897 9.6227E-05 507.25067404358475 35.308 0.9606 35.308 34.753 35.713 0 137 49 3 0 0 0 0.031062 4 18632 18413;18522;18632;18733 54.774 12.679 1 35312000 35713 3667 23773 24232 42039;42040;42041;42042 42041 -0.019182252020527812 LPPPSDPQY 9 Unmodified _LPPPSDPQY_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2509155273438 2 507.250557 1012.48656 0.6364 0.00032282 -0.095364 -4.8373E-05 0.54104 0.00027444 507.25049863397345 41.497 1.1214 36.889 36.432 37.554 -4.6079 193 71 3 0 0 0 0.013323 5 24729 24729;24860;25000;25142;25291 71.134 35.089 1 81870000 35714 3667 23773 24232 42043;42044;42045;42046;42047 42043 -0.019182252020527812 LPPPSGYP 8 Unmodified _LPPPSGYP_ 0 0 0 REV__nc|ENSG00000150347|Q14865-2|ARID5B REV__nc|ENSG00000150347|Q14865-2|ARID5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2195739746094 2 414.218529 826.422505 NaN NaN NaN NaN NaN NaN NaN 35.976 1 35.976 35.476 36.476 0 0 0 0 0.93066 1 19052 19052 14.582 0 1 + 35715 21022 23774 24233 42048 42048 0.002350394316749771 LPPPVHVDY 9 Unmodified _LPPPVHVDY_ 0 0 0 ENSG00000111358|ENST00000543341|GTF2H3;nc|ENSG00000111358|Q13889-2|GTF2H3;ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENSG00000111358|ENST00000543341|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7772216796875 2 518.776742 1035.53893 0.49385 0.0002562 0.29393 0.00015248 0.78778 0.00040868 518.7768494185585 46.698 1.0871 46.698 46.252 47.339 0 134 51 3 0 0 0 0.038285 5 25675 25343;25451;25552;25675;25792 50.855 20.63 1 35362000 35716 2785 23775 24234 42049;42050;42051;42052;42053 42052 0.022583579315551106 LPPPVHVDY 9 Unmodified _LPPPVHVDY_ 0 0 0 ENSG00000111358|ENST00000543341|GTF2H3;nc|ENSG00000111358|Q13889-2|GTF2H3;ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENSG00000111358|ENST00000543341|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7767333984375 2 518.776742 1035.53893 0.5659 0.00029357 0.10265 5.3255E-05 0.66855 0.00034683 518.7767359364283 46.837 0.86956 46.5 46.21 47.08 -0.33664 117 43 3 0 0 0 0.070838 3 25199 24986;25199;25311 39.957 16.809 1 29128000 35717 2785 23775 24234 42054;42055;42056 42055 0.022583579315551106 LPPPVHVDY 9 Unmodified _LPPPVHVDY_ 0 0 0 ENSG00000111358|ENST00000543341|GTF2H3;nc|ENSG00000111358|Q13889-2|GTF2H3;ENST00000539429.1_1_12:124144026-124144779:+|nuORF ENSG00000111358|ENST00000543341|GTF2H3 ENSG00000111358|ENST00000543341|GTF2H3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7767944335938 2 518.776742 1035.53893 0.99166 0.00051445 -0.38832 -0.00020145 0.60333 0.000313 518.7759876523614 52.933 1.1303 47.129 46.656 47.786 -5.8042 153 66 4 0 0 0 0.042911 4 33184 33184;33307;33425;33542 48.346 19.859 1 211730000 35718 2785 23775 24234 42057;42058;42059;42060 42057 0.022583579315551106 LPPQGSDTAKI 11 Unmodified _LPPQGSDTAKI_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3084716796875 2 563.808771 1125.60299 0.49374 0.00027838 2.3784 0.001341 2.8722 0.0016193 563.810562032052 58.046 0.49537 57.556 57.247 57.742 -0.48974 44 23 3 0 0 0 0.5229 1 31475 31475 15.248 0.41021 1 6322000 + 35719 17769 23776 24235 42061 42061 0.0452109329785344 LPPQPSEPGF 10 Unmodified _LPPQPSEPGF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220370207-220370552:+|nuORF nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.808837890625 2 534.771657 1067.52876 -0.10816 -5.7843E-05 1.3585 0.00072647 1.2503 0.00066863 534.7726953152331 69.918 0.24941 69.439 69.245 69.495 -0.47903 23 10 3 0 0 0 0.23566 1 38131 38131 7.2892 0 1 1701500 35720 16251 23777 24236 42062 42062 -0.002302497936625514 LPPQPSEPGF 10 Unmodified _LPPQPSEPGF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220370207-220370552:+|nuORF nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.771657 1067.52876 0.35484 0.00018976 2.6059 0.0013935 2.9607 0.0015833 534.7730408538206 69.363 0.30865 69.363 69.203 69.511 0 -0.037911 0.00088188 NaN 7.2892 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2466000 35721 16251 23777 24236 -0.002302497936625514 LPPQQFQQHYF 11 Unmodified _LPPQQFQQHYF_ 0 0 0 REV__nc|ENSG00000186638|Q5T7B8-4|KIF24 REV__nc|ENSG00000186638|Q5T7B8-4|KIF24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 477.7694396972656 3 478.238455 1431.69353 1.1389 0.00054464 2.8703 0.0013727 4.0092 0.0019173 478.239641718322 48.415 0.15742 43.181 43.124 43.282 -5.2339 12 9 2 0 0 0 0.30542 1 30228 30228 2.8433 2.0668 1 24066000 + 35722 23585 23778 24237 42063 42063 -0.005044376538535289 LPPQWQLYL 9 Unmodified _LPPQWQLYL_ 0 0 0 REV__ENSG00000123496|ENST00000243213|IL13RA2 REV__ENSG00000123496|ENST00000243213|IL13RA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.321044921875 2 579.321317 1156.62808 0.54067 0.00031322 -0.68166 -0.0003949 -0.14099 -8.1676E-05 579.320867180133 76.012 0.33974 76.06 75.864 76.204 0.047943 38 14 3 0 0 0 0.30562 1 41990 41990 16.942 1.0951 1 15225000 + 35723 19390 23779 24238 42064 42064 0.05603192891089748 LPPRRRRPR 9 Unmodified _LPPRRRRPR_ 0 0 0 ENST00000594126.1_2_19:57702875-57703274:+|nuORF;ENST00000263095.10_1_19:57702998-57703274:+|nuORF ENST00000594126.1_2_19:57702875-57703274:+|nuORF ENST00000594126.1_2_19:57702875-57703274:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.38671875 2 602.386514 1202.75848 0.96937 0.00058394 0.39147 0.00023582 1.3608 0.00081975 602.3857861019154 103.42 0.12878 97.243 97.188 97.317 -6.1757 36 19 3 0 0 0 0.61381 1 69331 69331 0.52476 0 1 6580700 35724 11280 23780 24239 42065 42065 0.16520646453318477 LPPSPLYQLL 10 Unmodified _LPPSPLYQLL_ 0 0 0 REV__ENSG00000120457|ENST00000529694|KCNJ5 REV__ENSG00000120457|ENST00000529694|KCNJ5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8935852050781 3 380.893625 1139.65905 -0.24617 -9.3763E-05 -0.65128 -0.00024807 -0.89745 -0.00034183 380.8934166010165 36.964 0.36289 36.986 36.767 37.13 0.021545 48 16 4 0 0 0 0.65023 1 19649 19649 8.4443 8.4443 1 7896900 + 35725 19245 23781 24240 42066 42066 0.09480346205327805 LPPSPPAAY 9 Unmodified _LPPSPPAAY_ 0 0 0 REV__nc|ENSG00000143369|Q16610-2|ECM1 REV__nc|ENSG00000143369|Q16610-2|ECM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7443237304688 2 456.744911 911.475269 -0.13746 -6.2785E-05 -0.11053 -5.0486E-05 -0.248 -0.00011327 456.7447428766558 39.221 0.40124 38.934 38.763 39.164 -0.28687 32 18 2 0 0 0 0.39863 1 20785 20785 12.532 0.89125 1 4951300 + 35726 20629 23782 24241 42067 42067 0.01598997494465948 LPPSTLQQL 9 Unmodified _LPPSTLQQL_ 0 0 0 SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7905883789062 2 498.78985 995.565146 0.96739 0.00048252 0.085849 4.282E-05 1.0532 0.00052535 498.7898434410257 68.624 0.50011 62.448 62.205 62.705 -6.1757 65 28 3 0 0 0 0.013323 1 44939 44939 71.134 5.8986 1 65023000 35727 30172 23783 24242 42068 42068 0.0671862710306641 LPPTGEGKGG 10 Unmodified _LPPTGEGKGG_ 0 0 0 nc|ENSG00000106290|P49848-4|TAF6;nc|ENSG00000106290|P49848-2|TAF6;ENSG00000106290|ENST00000453269|TAF6;nc|ENSG00000106290|P49848-3|TAF6 nc|ENSG00000106290|P49848-4|TAF6 nc|ENSG00000106290|P49848-4|TAF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7450866699219 2 456.742899 911.471246 0.72106 0.00032934 1.7593 0.00080355 2.4804 0.0011329 456.743604459889 43.581 0.74379 38.816 38.607 39.351 -4.7648 107 47 3 0 0 0 0.24625 1 26672 26672 30.637 30.637 1 51916000 35728 2412 23784 24243 42069 42069 0.011969080007816046 LPPTIYIPYL 10 Unmodified _LPPTIYIPYL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2327270507812 3 397.233759 1188.67945 -0.28852 -0.00011461 -1.5138 -0.00060134 -1.8023 -0.00071595 397.2330595809897 37.342 0.24771 37.364 37.216 37.464 0.021545 20 10 3 0 0 0 0.44373 1 19833 19833 12.175 0 1 1841200 35729 6396 23785 24244 42070 42070 0.09265516865139034 LPPTPIRLL 9 Unmodified _LPPTPIRLL_ 0 0 0 REV__ENST00000558375.1_1_15:86292147-86292342:-|nuORF REV__ENST00000558375.1_1_15:86292147-86292342:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3347778320312 2 510.334227 1018.6539 0.54415 0.0002777 0.89315 0.00045581 1.4373 0.0007335 510.33465588814835 74.415 1.2213 74.461 73.866 75.087 0.045959 153 55 3 0 0 0 0.32871 1 40821 40821 15.847 0 1 8191900 + 35730 28801 23786 24245 42071 42071 0.1453208713337517 LPPVETVGF 9 Unmodified _LPPVETVGF_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7654418945312 2 479.765843 957.517133 0.33522 0.00016083 0.061462 2.9487E-05 0.39668 0.00019031 479.76558972233295 69.338 0.51414 69.338 69.084 69.598 0 54 22 3 0 0 0 0.013472 2 38652 38552;38652 70.716 19.86 1 2457300 35731 9240 23787 24246 42072;42073 42073 0.036675531830155705 LPPVETVGF 9 Unmodified _LPPVETVGF_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5242919921875 1 958.52441 957.517133 0.033955 3.2547E-05 0.3334 0.00031958 0.36736 0.00035212 958.5244253175053 69.366 0.35715 69.366 69.177 69.534 0 25 15 2 0 0 0 0.0090851 2 38621 38621;38723 85.357 21.12 1 1149400 35732 9240 23787 24246 42074;42075 42074 0.036675531830155705 LPPVETVGF 9 Unmodified _LPPVETVGF_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7660217285156 2 479.765843 957.517133 0.051649 2.4779E-05 0.19053 9.1408E-05 0.24218 0.00011619 479.765776588825 69.921 0.4596 69.442 69.109 69.568 -0.47903 54 20 3 0 0 0 0.0081063 2 38216 38106;38216 93.883 23.168 1 4123300 35733 9240 23787 24246 42076;42077 42077 0.036675531830155705 LPPVETVGF 9 Unmodified _LPPVETVGF_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 958.5247192382812 1 958.52441 957.517133 -0.15474 -0.00014832 0.52531 0.00050352 0.37057 0.0003552 958.5244648230178 69.925 0.31224 69.446 69.203 69.515 -0.47903 22 13 2 0 0 0 0.019303 2 38240 38137;38240 64.236 18.215 1 1429800 35734 9240 23787 24246 42078;42079 42079 0.036675531830155705 LPPVETVGF 9 Unmodified _LPPVETVGF_ 0 0 0 nc|ENSG00000184281|Q9Y5U2-2|TSSC4;ENSG00000184281|ENST00000333256|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 nc|ENSG00000184281|Q9Y5U2-2|TSSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7654418945312 2 479.765843 957.517133 0.33204 0.0001593 -0.3339 -0.00016019 -0.0018598 -8.9227E-07 479.765313320414 76.982 0.67573 70.806 70.562 71.237 -6.1757 82 37 3 0 0 0 0.0081063 2 50359 50359;50476 93.883 33.494 1 22394000 35735 9240 23787 24246 42080;42081 42080 0.036675531830155705 LPPVPLPWPGG 11 Unmodified _LPPVPLPWPGG_ 0 0 0 ENST00000357052.7_1_19:41292855-41302674:+|nuORF ENST00000357052.7_1_19:41292855-41302674:+|nuORF ENST00000357052.7_1_19:41292855-41302674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2182922363281 3 377.218332 1128.63317 0.38796 0.00014635 -0.7079 -0.00026703 -0.31993 -0.00012069 377.21801450047 57.776 0.2636 57.287 57.126 57.39 -0.48974 15 12 2 0 0 0 0.5111 1 31417 31417 8.4443 0 1 2052000 35736 12106 23788 24247 42082 42082 0.07399496753691892 LPQAHYHYT 9 Unmodified _LPQAHYHYT_ 0 0 0 REV__UBE2J1|p.D27Y|1|0.21|ENSG00000198833|chr6:89343709-89343709|C/A|missense_variant REV__UBE2J1|p.D27Y|1|0.21|ENSG00000198833|chr6:89343709-89343709|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2803344726562 2 565.274898 1128.53524 1.3637 0.00077085 0.73526 0.00041562 2.0989 0.0011865 565.2753040845042 47.898 1.3408 42.664 41.801 43.142 -5.2339 138 84 2 0 0 0 0.14602 2 29495 29495;29628 28.487 6.7402 1 86492000 + 35737 30131 23789 24248 42083;42084 42083 -0.023883118423100314 LPQAIEFVNQY 11 Unmodified _LPQAIEFVNQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.3427124023438 2 661.342978 1320.6714 0.48433 0.00032031 -0.036959 -2.4443E-05 0.44737 0.00029587 661.3427430286458 75.891 0.38649 75.414 75.255 75.641 -0.47714 50 16 4 0 0 0 0.26767 2 41612 41502;41612 28.495 25.213 1 4523100 35738 357 23790 24249 42085;42086 42086 0.023893378777302132 LPQAIEFVNQY 11 Unmodified _LPQAIEFVNQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.3441162109375 2 661.342978 1320.6714 0.54655 0.00036146 0.35113 0.00023222 0.89768 0.00059367 661.3430896335327 75.414 0.29739 75.46 75.307 75.605 0.045959 28 13 3 0 0 0 0.29175 1 41560 41560 27.223 18.478 1 2944300 35739 357 23790 24249 42087 42087 0.023893378777302132 LPQAIEFVNQY 11 Unmodified _LPQAIEFVNQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.343994140625 2 661.342978 1320.6714 0.65797 0.00043515 0.60286 0.00039869 1.2608 0.00083384 661.3436415044387 83.419 0.54407 77.244 76.964 77.508 -6.1757 71 28 3 0 0 0 9.5168E-10 3 54869 54749;54869;55008 117.76 88.679 1 26772000 35740 357 23790 24249 42088;42089;42090 42089 0.023893378777302132 LPQANRDTL 9 Unmodified _LPQANRDTL_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2799072265625 2 514.28018 1026.54581 -0.19362 -9.9576E-05 0.4595 0.00023631 0.26587 0.00013673 514.2802973139363 29.412 0.22785 29.412 29.262 29.489 0 29 10 4 0 0 0 0.032796 1 15206 15206 53.833 9.9745 1 10475000 35741 6809 23791 24250 42091 42091 0.033596708121422125 LPQANRDTL 9 Unmodified _LPQANRDTL_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2808837890625 2 514.28018 1026.54581 0.89624 0.00046092 -0.81237 -0.00041778 0.083875 4.3135E-05 514.2798352801292 33.426 0.41722 29.44 29.242 29.66 -3.9853 46 23 3 0 0 0 0.012668 2 19103 19103;19217 72.968 17.979 1 48575000 35742 6809 23791 24250 42092;42093 42092 0.033596708121422125 LPQAVSRPARP 11 Unmodified _LPQAVSRPARP_ 0 0 0 ENST00000418833.2_1_1:1335453-1336111:+|nuORF ENST00000418833.2_1_1:1335453-1336111:+|nuORF ENST00000418833.2_1_1:1335453-1336111:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.7711791992188 2 596.351471 1190.68839 -0.039435 -2.3517E-05 3.2086 0.0019135 3.1692 0.00189 596.3540125118913 92.851 0.31275 86.676 86.575 86.887 -6.1757 28 19 2 0 0 0 0.30139 1 61568 61568 5.7319 0.97584 1 22090000 35743 13076 23792 24251 42094 42094 0.10067303274172446 LPQAWFSGIY 10 Unmodified _LPQAWFSGIY_ 0 0 0 REV__ENSG00000103966|ENST00000220325|EHD4 REV__ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3013916015625 2 591.303124 1180.5917 0.92051 0.0005443 1.3765 0.00081395 2.297 0.0013582 591.3037772759625 50.812 0.3382 45.163 44.958 45.297 -5.649 31 20 2 0 0 0 0.16524 1 31824 31824 37.974 3.8716 1 33556000 + 35744 18329 23793 24252 42095 42095 0.008623159943908831 LPQCHNDK 8 Unmodified _LPQCHNDK_ 0 0 0 REV__ENST00000503879.5_1_4:108969658-108999477:-|nuORF REV__ENST00000503879.5_1_4:108969658-108999477:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7274169921875 2 477.726726 953.4389 0.84463 0.0004035 -0.99471 -0.0004752 -0.15008 -7.1696E-05 477.7264158585803 51.217 0.45567 51.217 51.067 51.522 0 47 20 3 0 0 0 0.63229 1 28352 28352 23.148 7.3012 1 10971000 + 35745 28045 23794 24253 42096 42096 -0.039682026738887544 LPQDLAVAQY 10 Unmodified _LPQDLAVAQY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2973022460938 2 559.298039 1116.58152 0.62185 0.0003478 0.1873 0.00010475 0.80914 0.00045255 559.2979122677422 57.01 0.32084 57.01 56.835 57.156 0 31 13 3 0 0 0 0.39689 1 31709 31709 31.268 5.0002 1 2900200 35746 2795 23795 24254 42097 42097 0.027897082691197284 LPQDLAVAQY 10 Unmodified _LPQDLAVAQY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8009643554688 2 559.298039 1116.58152 0.88061 0.00049252 1.1712 0.00065508 2.0519 0.0011476 559.2986280521186 65.047 0.40446 58.871 58.684 59.089 -6.1757 36 22 2 0 0 0 0.1711 1 42181 42181 49.527 15.126 1 16989000 35747 2795 23795 24254 42098 42098 0.027897082691197284 LPQDMVVQL 9 Oxidation (M) _LPQDM(Oxidation (M))VVQL_ LPQDM(1)VVQL LPQDM(48)VVQL 0 0 1 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.78173828125 2 529.781167 1057.54778 0.74108 0.00039261 -0.10588 -5.6092E-05 0.6352 0.00033652 529.7810656054925 57.313 0.44618 57.313 57.064 57.51 0 55 19 5 0 0 0 0.044011 1 31906 31906 47.749 27.295 1 32805000 35748 8124 23796 24255 42099 42099 1375 0.021309635057377818 LPQDMVVQL 9 Unmodified _LPQDMVVQL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7855834960938 2 521.78371 1041.55287 0.59482 0.00031037 0.11509 6.0052E-05 0.70991 0.00037042 521.7838791376637 73.381 0.34921 72.905 72.717 73.066 -0.47588 38 15 3 0 0 0 0.15471 1 40123 40123 27.629 9.4825 1 2468900 35749 8124 23796 24256 42100 42100 0.0337526736836935 LPQDMVVQL 9 Unmodified _LPQDMVVQL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2872314453125 2 521.78371 1041.55287 0.8983 0.00046872 1.5822 0.00082559 2.4805 0.0012943 521.7836964965115 80.902 1.0197 74.726 73.96 74.98 -6.1757 102 57 4 0 0 0 0.094149 1 53035 53035 34.402 9.7278 1 63679000 35750 8124 23796 24256 42101 42101 0.0337526736836935 LPQDSQDLVL 10 Unmodified _LPQDSQDLVL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.30078125 2 564.300778 1126.587 0.26734 0.00015086 -0.28229 -0.0001593 -0.014956 -8.4395E-06 564.3005632007946 61.682 0.30169 61.682 61.497 61.798 0 22 13 2 0 0 0 0.38225 1 34389 34389 22.658 6.509 1 1368800 35751 1181 23797 24257 42102 42102 0.02877387060948422 LPQDTFIQF 9 Unmodified _LPQDTFIQF_ 0 0 0 nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;nc|ENSG00000170266|P16278-2|GLB1 nc|ENSG00000170266|P16278-3|GLB1 nc|ENSG00000170266|P16278-3|GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7869873046875 2 554.787307 1107.56006 0.75473 0.00041872 -0.80241 -0.00044516 -0.047674 -2.6449E-05 554.7867384307777 82.947 0.38833 82.449 82.224 82.613 -0.49751 30 16 2 0 0 0 0.25681 1 45359 45359 19.257 2.1441 1 3508700 35752 7965 23798 24258 42103 42103 0.010583232404314913 LPQDTFIQF 9 Unmodified _LPQDTFIQF_ 0 0 0 nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;nc|ENSG00000170266|P16278-2|GLB1 nc|ENSG00000170266|P16278-3|GLB1 nc|ENSG00000170266|P16278-3|GLB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2891845703125 2 554.787307 1107.56006 0.81989 0.00045486 3.7204 0.002064 4.5403 0.0025189 555.2906440796775 90.35 0.38991 84.175 83.934 84.324 -6.1757 45 22 3 0 0 0 0.047788 1 59685 59685 45.7 5.7499 1 12114000 35753 7965 23798 24258 42104 42104 0.010583232404314913 LPQDVILKF 9 Unmodified _LPQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8236694335938 2 536.823692 1071.63283 0.6836 0.00036697 -0.87 -0.00046704 -0.1864 -0.00010006 536.8231606728208 73.353 0.31195 73.353 73.174 73.485 0 39 17 3 0 0 0 0.020676 1 40813 40813 76.825 33.052 1 4497900 35754 3769 23799 24259 42105 42105 0.09988077033858644 LPQDVILKF 9 Unmodified _LPQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.8238525390625 2 536.823692 1071.63283 0.60557 0.00032509 -1.2232 -0.00065662 -0.61759 -0.00033153 536.8228974075919 73.76 0.72663 73.284 73.042 73.768 -0.47588 108 32 6 0 0 0 0.0083595 3 40298 40298;40396;40503 118.07 33.092 1 261310000 35755 3769 23799 24259 42106;42107;42108 42106 0.09988077033858644 LPQDVILKF 9 Unmodified _LPQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8231811523438 2 536.823692 1071.63283 0.18699 0.00010038 -0.66472 -0.00035684 -0.47773 -0.00025645 536.8232470479909 73.198 1.0128 73.24 72.74 73.753 0.041725 145 47 5 0 0 0 0.012024 3 40306 40306;40407;40513 90.135 30.061 1 622180000 35756 3769 23799 24259 42109;42110;42111 42109 0.09988077033858644 LPQDVILKF 9 Unmodified _LPQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8245239257812 2 536.823692 1071.63283 0.77651 0.00041685 1.2323 0.00066154 2.0088 0.0010784 536.8247480386859 83.109 0.5841 76.933 76.608 77.192 -6.1757 80 31 3 0 0 0 0.0084349 1 54684 54684 117.76 48.656 1 47492000 35757 3769 23799 24259 42112 42112 0.09988077033858644 LPQDVILKF 9 Unmodified _LPQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.82421875 2 536.823692 1071.63283 0.47977 0.00025755 0.062452 3.3526E-05 0.54222 0.00029108 536.8236270660319 84.248 2.1675 78.072 77.125 79.292 -6.1757 418 123 4 0 0 0 0.0082968 11 55197 54827;54948;55071;55197;55325;55447;55570;55705;55948;56082;56233 128.93 39.033 1 509080000 35758 3769 23799 24259 42113;42114;42115;42116;42117;42118;42119;42120;42121;42122;42123 42116 0.09988077033858644 LPQEAFEKY 9 Unmodified _LPQEAFEKY_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7855224609375 2 562.784764 1123.55498 0.29698 0.00016713 -0.059308 -3.3378E-05 0.23767 0.00013376 562.7844898468999 42.15 0.44209 42.15 41.94 42.382 0 79 22 5 0 0 0 0.0084276 2 22753 22753;22862 91.085 49.245 1 109030000 35759 2543 23800 24260 42124;42125 42124 -0.0018598062217733968 LPQEAFEKY 9 Unmodified _LPQEAFEKY_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7849731445312 2 562.784764 1123.55498 NaN NaN NaN NaN NaN NaN NaN 42.477 1 42.17 41.67 42.67 -0.30682 0 0 0 0.0076565 1 22565 22565 97.741 41.564 1 35760 2543 23800 24260 42126 42126 -0.0018598062217733968 LPQEAFEKY 9 Unmodified _LPQEAFEKY_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7868041992188 2 562.784764 1123.55498 1.7257 0.00097119 -0.0066263 -3.7292E-06 1.7191 0.00096746 562.7845900445109 47.76 0.57933 42.526 42.229 42.808 -5.2339 110 34 4 0 0 0 0.0047912 2 29541 29541;29678 117.84 72.138 1 190070000 35761 2543 23800 24260 42127;42128 42127 -0.0018598062217733968 LPQEEDYGF 9 Unmodified _LPQEEDYGF_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5002136230469 3 366.497712 1096.47131 0.1228 4.5007E-05 3.823 0.0014011 3.9458 0.0014461 366.5001927613324 48.086 0.51999 48.086 47.831 48.351 0 65 25 3 0 0 0 0.2143 1 26281 26281 15.248 0 1 9458200 35762 3746 23801 24261 42129 42129 -0.07307136789904689 LPQEEDYGF 9 Unmodified _LPQEEDYGF_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2455444335938 2 549.242929 1096.47131 0.37672 0.00020691 3.6135 0.0019847 3.9902 0.0021916 549.246557769255 48.109 0.40016 48.109 47.831 48.231 0 28 19 3 0 0 0 0.2143 1 26400 26400 21.747 0 1 4613600 35763 3746 23801 24261 42130 42130 -0.07307136789904689 LPQELLQAY 9 Unmodified _LPQELLQAY_ 0 0 0 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7952880859375 2 537.795132 1073.57571 0.53552 0.000288 -1.9766 -0.001063 -1.4411 -0.000775 537.7931184111999 67.935 0.48875 67.452 67.255 67.744 -0.48219 55 22 4 0 0 0 0.047788 2 37153 37054;37153 45.7 20.093 1 13662000 35764 8587 23802 24262 42131;42132 42132 0.04186609757448423 LPQELLQAY 9 Unmodified _LPQELLQAY_ 0 0 0 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 ENSG00000176387|ENST00000326152|HSD11B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7962646484375 2 537.795132 1073.57571 0.92798 0.00049906 0.88614 0.00047656 1.8141 0.00097562 537.7957962203911 74.645 0.50717 68.47 68.252 68.759 -6.1757 42 26 2 0 0 0 0.21643 2 48739 48739;48890 21.537 3.3906 1 34729000 35765 8587 23802 24262 42133;42134 42133 0.04186609757448423 LPQEQGNMEY 10 Unmodified _LPQEQGNMEY_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MSMS AL20221201_MKP_PDAC_01 4 604.7660522460938 2 604.766245 1207.51794 NaN NaN NaN NaN NaN NaN NaN 43.692 1 38.927 38.427 39.427 -4.7648 0 0 0 0.56653 1 26571 26571 32.037 20.397 1 35766 3420 23803 24263 42135 42135 -0.07752020230259404 LPQEYQYF 8 Unmodified _LPQEYQYF_ 0 0 0 nc|ENSG00000185621|Q96KR4-2|LMLN;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN nc|ENSG00000185621|Q96KR4-2|LMLN nc|ENSG00000185621|Q96KR4-2|LMLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2576904296875 2 544.258382 1086.50221 0.38404 0.00020902 -1.5041 -0.00081862 -1.1201 -0.0006096 544.2570767981666 72.504 0.26711 72.028 71.878 72.145 -0.4761 30 12 3 0 0 0 0.64853 1 39649 39649 21.747 1.293 1 1898900 35767 9389 23804 24264 42136 42136 -0.037579386849984076 LPQFSSIEY 9 Unmodified _LPQFSSIEY_ 0 0 0 ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2730102539062 2 542.27149 1082.52843 NaN NaN NaN NaN NaN NaN NaN 68.744 1 68.263 67.763 68.763 -0.48071 0 0 0 0.047623 1 37575 37575 58.679 22.552 1 35768 1893 23805 24265 42137 42137 -0.009536695135238915 LPQGCHIYEY 10 Carbamidomethyl (C) _LPQGC(Carbamidomethyl (C))HIYEY_ LPQGC(1)HIYEY LPQGC(70)HIYEY 0 1 0 ENSG00000144535|ENST00000325385|DIS3L2;ENST00000498319.2_1_2:233127988-233172255:+|nuORF;ENST00000433430.5_1_2:233125383-233196385:+|nuORF;ENST00000445090.5_1_2:233028172-233195406:+|nuORF;nc|ENSG00000144535|Q8IYB7-2|DIS3L2 ENSG00000144535|ENST00000325385|DIS3L2 ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.2938232421875 2 640.29243 1278.57031 0.42013 0.00026901 0.070928 4.5415E-05 0.49106 0.00031442 640.7928551081477 45.531 0.16495 40.576 40.504 40.669 -4.9549 14 10 2 0 0 0 0.025861 1 27997 27997 70.332 39.064 1 6034900 35769 5616 23806 24266 42138 42138 571 -0.057834370966475035 LPQGDRYWRY 10 Unmodified _LPQGDRYWRY_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.3384399414062 2 677.338561 1352.66257 0.10284 6.9659E-05 0.070532 4.7774E-05 0.17337 0.00011743 677.3381369205322 66.279 0.39959 66.279 66.091 66.491 0 52 17 4 0 0 0 0.56348 1 36934 36934 13.042 0 1 8021400 + 35770 17812 23807 24267 42139 42139 0.0003440903187765798 LPQGDRYWRY 10 Unmodified _LPQGDRYWRY_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3389282226562 2 677.338561 1352.66257 0.24625 0.0001668 0.18451 0.00012498 0.43076 0.00029177 677.3384524446644 66.832 0.32968 66.349 66.194 66.524 -0.48323 49 15 4 0 0 0 0.46514 1 36469 36469 18.146 0 1 9094800 + 35771 17812 23807 24267 42140 42140 0.0003440903187765798 LPQGDRYWRY 10 Unmodified _LPQGDRYWRY_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 677.338561 1352.66257 0.10284 6.9659E-05 0.070532 4.7774E-05 0.17337 0.00011743 677.3381369205322 66.279 0.39959 66.279 66.091 66.491 0 -0.035112 -8.9978E-05 NaN 18.146 52 17 4 NaN NaN NaN NaN 0 NaN NaN 0 8021400 + 35772 17812 23807 24267 0.0003440903187765798 LPQGIVREL 9 Unmodified _LPQGIVREL_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.811279296875 2 512.811116 1023.60768 0.15092 7.7396E-05 -0.19468 -9.9833E-05 -0.043752 -2.2437E-05 512.8109934788315 54.102 0.35597 53.636 53.466 53.822 -0.46664 50 17 4 0 0 0 0.025842 1 29378 29378 57.722 1.5449 1 23871000 35773 10427 23808 24268 42141 42141 0.09682022231265819 LPQGIVREL 9 Unmodified _LPQGIVREL_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8117065429688 2 512.811116 1023.60768 0.74835 0.00038376 0.070955 3.6387E-05 0.8193 0.00042015 512.8110305662677 59.641 0.41479 53.526 53.286 53.701 -6.1147 57 22 3 0 0 0 0.01958 1 38265 38265 63.961 11.692 1 101790000 35774 10427 23808 24268 42142 42142 0.09682022231265819 LPQGPLGTSF 10 Unmodified _LPQGPLGTSF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7720642089844 2 508.7742 1015.53385 0.56844 0.00028921 -0.72043 -0.00036653 -0.15199 -7.7328E-05 508.7734912131088 66.819 0.24559 66.819 66.77 67.016 0 18 11 2 0 0 0 0.62068 1 37283 37283 10.074 5.3179 1 825490 35775 10861 23809 24269 42143 42143 0.026700540689603258 LPQGPLGTSF 10 Unmodified _LPQGPLGTSF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7738342285156 2 508.7742 1015.53385 0.19451 9.8963E-05 0.66105 0.00033632 0.85556 0.00043529 508.77451693439605 67.409 0.57993 66.927 66.675 67.255 -0.48218 48 25 2 0 0 0 0.011118 3 36733 36733;36841;36946 85.642 44.292 1 36434000 35776 10861 23809 24269 42144;42145;42146 42144 0.026700540689603258 LPQGPLGTSF 10 Unmodified _LPQGPLGTSF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.77490234375 2 508.7742 1015.53385 0.88672 0.00045114 -0.07591 -3.8621E-05 0.81081 0.00041252 508.7742395422642 66.959 0.4641 66.977 66.733 67.197 0.018036 74 22 5 0 0 0 0.0093042 2 36678 36678;36782 88.954 46.859 1 22475000 35777 10861 23809 24269 42147;42148 42147 0.026700540689603258 LPQGPLGTSF 10 Unmodified _LPQGPLGTSF_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7740783691406 2 508.7742 1015.53385 0.73527 0.00037409 -1.0008 -0.00050917 -0.26551 -0.00013509 508.7740717989893 73.876 0.88739 67.701 67.326 68.213 -6.1757 160 44 5 0 0 0 0.0093042 4 48127 48127;48237;48356;48472 88.954 46.859 1 121370000 35778 10861 23809 24269 42149;42150;42151;42152 42149 0.026700540689603258 LPQGPPTPA 9 Unmodified _LPQGPPTPA_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2417602539062 2 439.242535 876.470518 0.3718 0.00016331 0.00032376 1.4221E-07 0.37213 0.00016345 439.24237737214713 65.502 0.2996 59.327 59.162 59.461 -6.1757 18 16 2 0 0 0 0.12424 1 42520 42520 30.637 8.8899 1 12025000 35779 5224 23810 24270 42153 42153 0.02734113351709766 LPQGRPPVF 9 Unmodified _LPQGRPPVF_ 0 0 0 nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7930908203125 2 505.792727 1009.5709 1.088 0.00055032 -1.1722 -0.00059289 -0.08415 -4.2562E-05 505.7921938481013 47.166 0.28891 47.133 46.996 47.285 -0.033417 34 14 3 0 0 0 0.012148 1 25378 25378 74.423 20.847 1 9194800 35780 3735 23811 24271 42154 42154 0.06649770405374511 LPQGRPPVF 9 Unmodified _LPQGRPPVF_ 0 0 0 nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7926940917969 2 505.792727 1009.5709 0.83533 0.0004225 0.080916 4.0927E-05 0.91625 0.00046343 505.7926776260929 52.58 0.35881 46.845 46.617 46.976 -5.7345 35 19 2 0 0 0 0.016184 2 33231 33117;33231 67.344 13.768 1 45854000 35781 3735 23811 24271 42155;42156 42156 0.06649770405374511 LPQHFQLEL 9 Unmodified _LPQHFQLEL_ 0 0 0 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3;ENSG00000123427|ENST00000300209|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-3|EEF1AKMT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8092041015625 2 562.808574 1123.60259 0.44294 0.00024929 0.63491 0.00035733 1.0779 0.00060662 562.8088045025257 68.851 0.28349 68.37 68.202 68.485 -0.48071 21 12 2 0 0 0 0.36964 1 37599 37599 13.906 0.86358 1 2269800 35782 3709 23812 24272 42157 42157 0.04573718368646951 LPQHLYNIE 9 Unmodified _LPQHLYNIE_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3314819335938 2 563.798206 1125.58186 0.87912 0.00049565 -0.37081 -0.00020906 0.50831 0.00028658 563.7976189637311 58.869 0.23963 58.809 58.661 58.901 -0.060719 17 11 2 0 0 0 0.20727 1 32013 32013 7.9102 0 1 1335300 35783 8551 23813 24273 42158 42158 0.024091279889944417 LPQHPDVEM 9 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ LPQHPDVEM(1) LPQHPDVEM(79) 0 0 1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2530517578125 2 541.252774 1080.491 -0.26509 -0.00014348 0.77053 0.00041705 0.50544 0.00027357 541.2533736825496 25.022 0.48134 25.022 24.802 25.283 0 123 40 4 0 0 0 0.010611 2 12845 12742;12845 78.728 46.423 1 21461000 35784 6747 23814 24274 42159;42160 42160 1171 -0.04603084050813777 LPQHPDVEM 9 Oxidation (M) _LPQHPDVEM(Oxidation (M))_ LPQHPDVEM(1) LPQHPDVEM(120) 0 0 1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2515869140625 2 541.252774 1080.491 0.60323 0.0003265 -0.85931 -0.0004651 -0.25607 -0.0001386 541.2521729385069 28.904 0.30562 25.602 25.401 25.707 -3.3016 25 15 2 0 0 0 0.0047067 1 16101 16101 118.07 63.295 1 43528000 35785 6747 23814 24274 42161 42161 1171 -0.04603084050813777 LPQHPDVEM 9 Unmodified _LPQHPDVEM_ 0 0 0 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2545776367188 2 533.255317 1064.49608 0.64902 0.00034609 -0.24464 -0.00013046 0.40438 0.00021564 533.2552670077815 43.435 0.43811 38.67 38.419 38.857 -4.7648 57 29 2 0 0 0 0.1685 2 26268 26268;26398 26.268 10.341 1 86268000 35786 6747 23814 24275 42162;42163 42162 -0.03358780188182209 LPQHQVPAY 9 Unmodified _LPQHQVPAY_ 0 0 0 ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7799682617188 2 526.779816 1051.54508 0.33801 0.00017806 -0.20308 -0.00010698 0.13493 7.1078E-05 526.7796489280165 31.185 0.38674 31.185 31.031 31.418 0 64 18 5 0 0 0 0.03327 2 16281 16179;16281 53.576 25.089 1 137980000 35787 4220 23815 24276 42164;42165 42165 0.021368761630810695 LPQHQVPAY 9 Unmodified _LPQHQVPAY_ 0 0 0 ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7794189453125 2 526.779816 1051.54508 0.20627 0.00010866 0.4992 0.00026297 0.70547 0.00037162 526.7800416734123 31.197 0.34345 31.094 30.917 31.26 -0.10269 47 13 5 0 0 0 0.0086179 2 16172 16172;16270 89.427 55.324 1 77022000 35788 4220 23815 24276 42166;42167 42166 0.021368761630810695 LPQHQVPAY 9 Unmodified _LPQHQVPAY_ 0 0 0 ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7803955078125 2 526.779816 1051.54508 -0.18903 -9.9578E-05 0.56156 0.00029582 0.37253 0.00019624 526.7801281488502 31.008 0.27035 31.038 30.882 31.152 0.030106 23 11 3 0 0 0 0.052168 1 16203 16203 44.407 17.523 1 4261600 35789 4220 23815 24276 42168 42168 0.021368761630810695 LPQHQVPAY 9 Unmodified _LPQHQVPAY_ 0 0 0 ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND ENSG00000130522|ENST00000252818|JUND MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.778564453125 2 526.779816 1051.54508 0.64347 0.00033897 -0.24123 -0.00012707 0.40225 0.0002119 526.7796355558276 35.437 0.58051 31.244 30.96 31.541 -4.1928 158 35 6 0 0 0 0.023164 3 20403 20403;20534;20665 60.39 36.6 1 845120000 35790 4220 23815 24276 42169;42170;42171 42169 0.021368761630810695 LPQHVAMEM 9 2 Oxidation (M) _LPQHVAM(Oxidation (M))EM(Oxidation (M))_ LPQHVAM(1)EM(1) LPQHVAM(48)EM(48) 0 0 2 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.249755859375 2 544.249177 1086.4838 -0.33685 -0.00018333 -0.26642 -0.000145 -0.60327 -0.00032833 544.249246580049 19.567 0.31313 19.567 19.372 19.686 0 108 42 3 0 0 0 0.044011 2 9826 9726;9826 47.749 11.622 1 3291600 35791 8404 23816 24277 42172;42173 42173 1429;1430 -0.05598139922858536 LPQHVAMEM 9 2 Oxidation (M) _LPQHVAM(Oxidation (M))EM(Oxidation (M))_ LPQHVAM(1)EM(1) LPQHVAM(76)EM(76) 0 0 2 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2503051757812 2 544.249177 1086.4838 0.74578 0.00040589 0.19121 0.00010406 0.93699 0.00050996 544.2495870807128 22.125 0.45996 19.39 19.102 19.562 -2.7348 63 25 3 0 0 0 0.011671 1 11878 11878 75.761 25.828 1 5148900 35792 8404 23816 24277 42174 42174 1429;1430 -0.05598139922858536 LPQHVAMEM 9 Oxidation (M) _LPQHVAM(Oxidation (M))EM_ LPQHVAM(0.999)EM(0.001) LPQHVAM(31)EM(-31) 0 0 1 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2525634765625 2 536.25172 1070.48889 1.2502 0.00067041 0.52642 0.00028229 1.7766 0.0009527 536.251937815006 34.111 0.50171 30.126 29.714 30.216 -3.9853 47 27 2 0 0 0 0.023481 1 19574 19574 60.074 23.947 2 10194000 35793 8404 23816 24278 42175 42175 1429;1430 -0.043538360602724424 LPQHVAMEM 9 Unmodified _LPQHVAMEM_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MSMS AL20221201_MKP_PDAC_01 4 528.2548828125 2 528.254262 1054.49397 NaN NaN NaN NaN NaN NaN NaN 48.168 1 42.934 42.434 43.434 -5.2339 0 0 0 0.059498 1 29976 29976 53.833 23.196 1 35794 8404 23816 24279 42176 42176 -0.03109532197640874 LPQIAAKIAAP 11 Unmodified _LPQIAAKIAAP_ 0 0 0 ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2 ENST00000577789.5_1_17:27207581-27224656:-|nuORF ENST00000577789.5_1_17:27207581-27224656:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8967590332031 3 364.89737 1091.67028 1.5833 0.00057773 -2.5178 -0.00091874 -0.93453 -0.00034101 364.8959384417474 99.973 0.45636 93.797 93.715 94.171 -6.1757 33 29 2 0 0 0 0.71341 1 66753 66753 1.2148 0 1 18633000 35795 4424 23817 24280 42177 42177 0.1281116829943585 LPQIAFCHF 9 Unmodified _LPQIAFCHF_ 0 0 0 REV__ENSG00000134115|ENST00000446702|CNTN6 REV__ENSG00000134115|ENST00000446702|CNTN6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.796142578125 2 538.273312 1074.53207 0.034365 1.8497E-05 1.7391 0.00093613 1.7735 0.00095463 538.2744529993888 52.222 0.53632 52.222 52.016 52.552 0 39 23 2 0 0 0 0.19298 1 28863 28863 8.5933 0 1 2890500 + 35796 19953 23818 24281 42178 42178 -0.0022127822066977387 LPQKGDVEM 9 Oxidation (M) _LPQKGDVEM(Oxidation (M))_ LPQKGDVEM(1) LPQKGDVEM(58) 0 0 1 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF;ENST00000587197.1_1_19:10250720-10250849:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7551879882812 2 516.755149 1031.49575 1.0832 0.00055973 0.02867 1.4815E-05 1.1118 0.00057454 516.7552131280959 19.788 0.26705 17.132 16.972 17.239 -2.6564 23 17 2 0 0 0 0.025842 1 10466 10466 57.722 13.864 1 2587300 35797 4267 23819 24282 42179 42179 757 -0.018741999080248206 LPQKIVQN 8 Unmodified _LPQKIVQN_ 0 0 0 ENST00000544778.6_1_17:65908834-65908894:+|nuORF ENST00000544778.6_1_17:65908834-65908894:+|nuORF ENST00000544778.6_1_17:65908834-65908894:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7232971191406 2 470.284734 938.554916 0.083503 3.927E-05 -0.080698 -3.7951E-05 0.0028044 1.3189E-06 470.2846506059046 56.926 0.23335 56.44 56.329 56.563 -0.48554 21 10 3 0 0 0 8.7369 1 30978 30978 18.135 4.6271 1 2228200 35798 15082 23820 24283 42180 42180 0.08318064168463479 LPQKIVQN 8 Unmodified _LPQKIVQN_ 0 0 0 ENST00000544778.6_1_17:65908834-65908894:+|nuORF ENST00000544778.6_1_17:65908834-65908894:+|nuORF ENST00000544778.6_1_17:65908834-65908894:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 470.284734 938.554916 1.4665 0.00068965 -0.30871 -0.00014518 1.1577 0.00054447 470.28469415464764 62.946 0.23391 56.771 56.623 56.857 -6.1757 0.16525 -0.00013388 NaN 18.135 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6444200 35799 15082 23820 24283 0.08318064168463479 LPQKNAAQF 9 Unmodified _LPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7799987792969 2 508.779816 1015.54508 -0.38606 -0.00019642 0.98921 0.00050329 0.60316 0.00030687 508.7802001405224 27.528 0.21065 27.528 27.427 27.638 0 15 9 2 0 0 0 0.32871 1 14188 14188 15.847 15.847 1 958460 35800 10558 23821 24284 42181 42181 0.037928761630723784 LPQKNAAQF 9 Unmodified _LPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7809143066406 2 508.779816 1015.54508 NaN NaN NaN NaN NaN NaN NaN 27.418 1 27.447 26.947 27.947 0.028664 0 0 0 0.10545 1 14249 14249 42.095 7.9072 1 35801 10558 23821 24284 42182 42182 0.037928761630723784 LPQKNAAQF 9 Unmodified _LPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7798461914062 2 508.779816 1015.54508 0.81062 0.00041243 0.62959 0.00032032 1.4402 0.00073275 508.7803479982571 30.96 0.24191 27.463 27.321 27.563 -3.497 15 10 2 0 0 0 0.013323 1 17488 17488 71.134 12.455 1 28553000 35802 10558 23821 24284 42183 42183 0.037928761630723784 LPQKVYLRGIV 11 Unmodified _LPQKVYLRGIV_ 0 0 0 REV__nc|ENSG00000171587|O60469-2|DSCAM REV__nc|ENSG00000171587|O60469-2|DSCAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2727661132812 3 429.271207 1284.79179 1.1186 0.00048018 4.11 0.0017643 5.2286 0.0022445 429.2726141059382 101.32 0.099037 95.141 95.064 95.163 -6.1757 9 5 2 0 0 0 0.72981 1 67976 67976 1.4551 0.12547 1 18970000 + 35803 22579 23822 24285 42184 42184 0.16078790661981657 LPQKYMKNL 9 Unmodified _LPQKYMKNL_ 0 0 0 ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF ENST00000342992.10_3_2:179510673-179515519:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8215942382812 2 567.820627 1133.6267 0.66926 0.00038002 2.4275 0.0013784 3.0967 0.0017584 567.8221030035037 47.749 0.22694 47.711 47.6 47.827 -0.038643 22 10 3 0 0 0 0.14602 1 25741 25741 28.487 12.64 1 3252500 35804 11993 23823 24286 42185 42185 0.06523235530653437 LPQLEQSF 8 Unmodified _LPQLEQSF_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.502197265625 1 961.498923 960.491647 -0.31286 -0.00030082 0.33261 0.00031981 0.019748 1.8988E-05 961.4986802813567 71.115 0.28238 71.115 70.954 71.237 0 20 11 2 0 0 0 0.5953 1 39574 39574 26.341 1.6674 1 793120 35805 8543 23824 24287 42186 42186 0.00982078660570096 LPQLGRLLD 9 Unmodified _LPQLGRLLD_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6;ENST00000592403.1_1_19:11327586-11327727:-|nuORF ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8113403320312 2 512.811116 1023.60768 0.74835 0.00038376 0.070955 3.6387E-05 0.8193 0.00042015 512.8110305662677 59.641 0.41479 53.526 53.286 53.701 -6.1147 57 22 3 0 0 0 0.023481 1 38406 38406 60.074 0.70553 1 101790000 35806 4182 23825 24288 42187 42187 0.09682022231288556 LPQLLAHL 8 Unmodified _LPQLLAHL_ 0 0 0 ENSG00000280094|ENST00000623530|OR1B1 ENSG00000280094|ENST00000623530|OR1B1 ENSG00000280094|ENST00000623530|OR1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7834777832031 2 452.78437 903.554188 0.23078 0.00010449 -0.63472 -0.00028739 -0.40394 -0.0001829 452.7842345626825 30.775 0.19161 30.805 30.69 30.882 0.030106 14 7 3 0 0 0 0.80232 1 16135 16135 5.2307 0 1 762790 35807 10945 23826 24289 42188 42188 0.09855269519414378 LPQLLALTL 9 Unmodified _LPQLLALTL_ 0 0 0 ENST00000230173.10_3_6:142623046-142623334:+|nuORF ENST00000230173.10_3_6:142623046-142623334:+|nuORF ENST00000230173.10_3_6:142623046-142623334:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2748718261719 2 491.320786 980.627018 1.4624 0.0007185 -0.98476 -0.00048383 0.47762 0.00023466 491.3204229071713 100.97 0.082741 94.794 94.748 94.831 -6.1757 7 4 2 0 0 0 0.094631 1 67666 67666 39.957 1.8061 1 11282000 35808 11069 23827 24290 42189 42189 0.1359297852217196 LPQLSMVKY 9 Unmodified _LPQLSMVKY_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.80078125 2 539.801903 1077.58925 0.28507 0.00015388 0.033056 1.7843E-05 0.31812 0.00017172 539.8015312095558 59.415 0.18727 59.362 59.312 59.499 -0.053062 13 9 2 0 0 0 0.1685 1 32420 32420 26.268 4.5215 1 1955700 35809 13944 23828 24291 42190 42190 0.05356144265056173 LPQLTGPVL 9 Unmodified _LPQLTGPVL_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;ENST00000469599.6_1_Y:21867883-21868626:-|nuORF nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2893676757812 2 469.289485 936.564418 -0.16423 -7.707E-05 1.5445 0.00072482 1.3803 0.00064775 469.2901182179744 76.767 0.24399 76.287 76.235 76.479 -0.47945 12 10 2 0 0 0 0.5029 1 42066 42066 7.2892 1.5288 1 403680 35810 3922;464;13839 23829 24292 42191 42191 0.09359832453992567 LPQMKMRL 8 Unmodified _LPQMKMRL_ 0 0 0 REV__ENST00000497057.1_1_1:201435078-201435489:-|nuORF REV__ENST00000497057.1_1_1:201435078-201435489:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2919006347656 2 508.790815 1015.56708 0.66402 0.00033785 1.056 0.00053729 1.72 0.00087514 509.292460215058 64.994 1.1313 58.818 58.347 59.478 -6.1757 144 63 3 0 0 0 0.72953 1 42355 42355 14.582 0.67564 1 41451000 + 35811 25982 23830 24293 42192 42192 0.05991641315654306 LPQNFAHIL 9 Unmodified _LPQNFAHIL_ 0 0 0 ENST00000216962.8_1_20:25277442-25277508:+|nuORF ENST00000216962.8_1_20:25277442-25277508:+|nuORF ENST00000216962.8_1_20:25277442-25277508:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.798583984375 2 526.798009 1051.58147 0.6495 0.00034216 -0.054366 -2.864E-05 0.59513 0.00031352 527.299490060434 56.957 0.25561 56.888 56.72 56.975 -0.068737 23 12 2 0 0 0 0.28047 1 30960 30960 18.135 2.2878 1 3139300 35812 11016 23831 24294 42193 42193 0.05773753059793307 LPQNGRQCY 9 Carbamidomethyl (C) _LPQNGRQC(Carbamidomethyl (C))Y_ LPQNGRQC(1)Y LPQNGRQC(67)Y 0 1 0 ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR ENST00000594364.1_1_19:44156314-44160865:-|nuORF ENST00000594364.1_1_19:44156314-44160865:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2703247070312 2 568.26929 1134.52403 1.2289 0.00069835 -0.028014 -1.5919E-05 1.2009 0.00068243 568.2694287732334 21.796 0.42868 19.061 18.827 19.256 -2.7348 54 23 3 0 0 0 0.016184 2 11730 11626;11730 67.344 41.945 1 7541900 35813 446 23832 24295 42194;42195 42195 25 -0.037854572080732396 LPQNISKNRYR 11 Unmodified _LPQNISKNRYR_ 0 0 0 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.8935546875 2 694.891492 1387.76843 0.067106 4.6631E-05 2.4058 0.0016718 2.4729 0.0017184 695.3942362923359 99.908 0.11649 93.732 93.664 93.78 -6.1757 12 8 2 0 0 0 0.26767 1 66708 66708 28.495 15.452 1 30103000 35814 1479 23833 24296 42196 42196 0.0900574487736776 LPQNLFKELFF 11 Unmodified _LPQNLFKELFF_ 0 0 0 REV__ENST00000368721.5_1_10:127525018-127525090:-|nuORF REV__ENST00000368721.5_1_10:127525018-127525090:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.9259338378906 3 465.927218 1394.75982 -0.02034 -9.4769E-06 -1.2896 -0.00060084 -1.3099 -0.00061032 465.9258069713409 56.931 0.35742 56.446 56.226 56.583 -0.48554 39 16 4 0 0 0 0.64126 1 30949 30949 9.2438 2.2067 1 6213800 + 35815 26018 23834 24297 42197 42197 0.07823378188163588 LPQNQPFVF 9 Unmodified _LPQNQPFVF_ 0 0 0 ENSG00000173486|ENST00000309366|FKBP2;ENST00000541388.1_1_11:64008551-64010784:+|nuORF;ENST00000536642.5_1_11:64008530-64011025:+|nuORF ENSG00000173486|ENST00000309366|FKBP2 ENSG00000173486|ENST00000309366|FKBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.290283203125 2 545.290017 1088.56548 0.20035 0.00010925 0.59964 0.00032698 0.79999 0.00043622 545.2901180623386 75.818 0.47961 75.866 75.607 76.086 0.047943 47 21 3 0 0 0 0.087258 1 41804 41804 36.044 25.22 1 3533700 35816 8331 23835 24298 42198 42198 0.024740468228856116 LPQNQPFVF 9 Unmodified _LPQNQPFVF_ 0 0 0 ENSG00000173486|ENST00000309366|FKBP2;ENST00000541388.1_1_11:64008551-64010784:+|nuORF;ENST00000536642.5_1_11:64008530-64011025:+|nuORF ENSG00000173486|ENST00000309366|FKBP2 ENSG00000173486|ENST00000309366|FKBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2926025390625 2 545.290017 1088.56548 0.65107 0.00035502 0.083325 4.5436E-05 0.7344 0.00040046 545.2907581625552 82.842 0.52536 76.666 76.438 76.964 -6.1757 51 29 2 0 0 0 0.038285 2 54425 54425;54583 50.855 23.971 1 26555000 35817 8331 23835 24298 42199;42200 42199 0.024740468228856116 LPQNVGLLY 9 Unmodified _LPQNVGLLY_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7919921875 2 508.792392 1015.57023 NaN NaN NaN NaN NaN NaN NaN 70.245 1 69.766 69.266 70.266 -0.47903 0 0 0 0.096036 1 38416 38416 44.407 12.29 1 35818 2843 23836 24299 42201 42201 0.06306930965649826 LPQPDPQQM 9 Oxidation (M) _LPQPDPQQM(Oxidation (M))_ LPQPDPQQM(1) LPQPDPQQM(58) 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2530517578125 2 535.252774 1068.491 -0.47994 -0.00025689 1.1962 0.00064025 0.71623 0.00038336 535.2534353723622 27.504 0.46754 27.504 27.377 27.845 0 55 22 4 0 0 0 0.025842 2 14252 14154;14252 57.722 34.986 1 5025500 35819 9027 23837 24300 42202;42203 42203 1514 -0.040510840507977264 LPQPDPQQM 9 Oxidation (M) _LPQPDPQQM(Oxidation (M))_ LPQPDPQQM(1) LPQPDPQQM(66) 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.252685546875 2 535.252774 1068.491 0.8646 0.00046278 -0.43965 -0.00023532 0.42495 0.00022746 535.2530194756954 32.398 0.55813 28.542 28.366 28.924 -3.8562 71 30 3 0 0 0 0.017075 3 18544 18409;18544;18671 66.457 43.72 1 13956000 35820 9027 23837 24300 42204;42205;42206 42205 1514 -0.040510840507977264 LPQPDPQQM 9 Unmodified _LPQPDPQQM_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2557373046875 2 527.255317 1052.49608 1.1433 0.00060279 1.1989 0.00063214 2.3422 0.0012349 527.2556049176076 47.282 0.38975 42.202 42.073 42.463 -5.0805 51 24 3 0 0 0 0.013041 2 29434 29305;29434 71.922 35.795 1 35109000 35821 9027 23837 24301 42207;42208 42208 -0.02806780188166158 LPQPDVFPL 9 Unmodified _LPQPDVFPL_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2880249023438 2 513.286943 1024.55933 0.38436 0.00019729 1.1755 0.00060336 1.5599 0.00080065 513.2874375153399 86.826 0.35262 86.323 86.141 86.494 -0.50318 21 13 2 0 0 0 0.52067 1 47479 47479 6.2058 0.47393 1 435140 35822 10908 23838 24302 42209 42209 0.04803528591378381 LPQPDVFPLF 10 Unmodified _LPQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.7864379882812 2 586.82115 1171.62775 1.1218 0.0006583 -2.1807 -0.0012797 -1.0589 -0.0006214 586.8202376422765 100.61 0.11938 100.57 100.51 100.63 -0.04216 7 4 2 0 0 0 0.21977 1 55882 55882 22.736 4.5899 1 2200700 35823 10908 23839 24303 42210 42210 0.048797731712284076 LPQPDVFPLF 10 Unmodified _LPQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3253784179688 2 586.82115 1171.62775 0.84336 0.0004949 0.9236 0.00054199 1.767 0.0010369 586.8207114098094 101.39 0.089279 95.211 95.163 95.252 -6.1757 12 4 4 0 0 0 0.011118 1 68041 68041 85.642 49.514 1 14386000 35824 10908 23839 24303 42211 42211 0.048797731712284076 LPQPEVILL 9 Unmodified _LPQPEVILL_ 0 0 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.3189086914062 2 511.318243 1020.62193 0.20007 0.0001023 0.46871 0.00023966 0.66878 0.00034196 511.3185047557037 99.736 0.11411 93.56 93.474 93.588 -6.1757 9 6 2 0 0 0 0.21643 1 66495 66495 21.537 0 1 27115000 35825 5359 23840 24304 42212 42212 0.11244674659576503 LPQPFHIAR 9 Unmodified _LPQPFHIAR_ 0 0 0 REV__nc|ENSG00000084734|Q14397|GCKR REV__nc|ENSG00000084734|Q14397|GCKR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2103271484375 3 360.210059 1077.60835 -0.28892 -0.00010407 -1.022 -0.00036813 -1.3109 -0.0004722 360.2102643062249 41.565 0.29919 41.563 41.402 41.701 -0.0017929 23 13 2 0 0 0 0.2143 1 22185 22185 15.248 0 1 28423000 + 35826 17740 23841 24305 42213 42213 0.07264861670978462 LPQPFHIAR 9 Unmodified _LPQPFHIAR_ 0 0 0 REV__nc|ENSG00000084734|Q14397|GCKR REV__nc|ENSG00000084734|Q14397|GCKR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.210059 1077.60835 -0.28892 -0.00010407 -1.022 -0.00036813 -1.3109 -0.0004722 360.2102643062249 41.565 0.29919 41.563 41.402 41.701 -0.0017929 0.029275 0.00038876 NaN 15.248 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 28423000 + 35827 17740 23841 24305 0.07264861670978462 LPQPNRALSF 10 Unmodified _LPQPNRALSF_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8201904296875 2 571.819473 1141.62439 NaN NaN NaN NaN NaN NaN NaN 52.828 1 52.764 52.264 53.264 -0.063423 0 0 0 0.52595 1 28631 28631 24.991 4.5373 1 35828 389 23842 24306 42214 42214 0.059245231172326385 LPQPPEGQTY 10 Unmodified _LPQPPEGQTY_ 0 0 0 ENST00000521628.1_1_8:48962382-48973385:+|nuORF;ENSG00000169139|ENST00000523111|UBE2V2 ENST00000521628.1_1_8:48962382-48973385:+|nuORF ENST00000521628.1_1_8:48962382-48973385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2800903320312 2 565.279846 1128.54514 0.028524 1.6124E-05 0.64572 0.00036501 0.67425 0.00038114 565.2803294465706 40.524 1.2215 40.524 39.595 40.817 0 129 63 3 0 0 0 0.0044938 5 21821 21483;21599;21714;21821;21939 100.09 45.317 1 18919000 35829 7840 23843 24307 42215;42216;42217;42218;42219 42218 -0.013991686275630855 LPQPPEGQTY 10 Unmodified _LPQPPEGQTY_ 0 0 0 ENST00000521628.1_1_8:48962382-48973385:+|nuORF;ENSG00000169139|ENST00000523111|UBE2V2 ENST00000521628.1_1_8:48962382-48973385:+|nuORF ENST00000521628.1_1_8:48962382-48973385:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 565.2813720703125 2 565.279846 1128.54514 NaN NaN NaN NaN NaN NaN NaN 47.014 1 41.933 41.433 42.433 -5.0805 0 0 0 0.033371 1 29132 29132 61.602 35.261 1 35830 7840 23843 24307 42220 42220 -0.013991686275630855 LPQPSSIVL 9 Unmodified _LPQPSSIVL_ 0 0 0 ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF ENSG00000033030|ENST00000633063|ZCCHC8 ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2868041992188 2 477.286943 952.559333 0.53544 0.00025556 -0.052264 -2.4945E-05 0.48317 0.00023061 477.28682493681066 70.901 0.43356 70.424 70.225 70.659 -0.47735 46 19 3 0 0 0 0.07916 1 38730 38730 37.974 7.3375 1 7896700 35831 596 23844 24308 42221 42221 0.08115528591372367 LPQPSSIVL 9 Unmodified _LPQPSSIVL_ 0 0 0 ENSG00000033030|ENST00000633063|ZCCHC8;ENST00000536663.5_1_12:122967212-122975555:-|nuORF;ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF ENSG00000033030|ENST00000633063|ZCCHC8 ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 953.5664672851562 1 953.566609 952.559333 0.34051 0.0003247 0.21758 0.00020747 0.55808 0.00053217 953.5668620914233 70.94 0.30258 70.462 70.286 70.589 -0.47736 21 13 2 0 0 0 0.040683 1 38786 38786 49.554 13.427 1 1570900 35832 596 23844 24308 42222 42222 0.08115528591372367 LPQPWRADVTY 11 Unmodified _LPQPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.3494262695312 2 673.348594 1344.68264 0.28422 0.00019138 -2.65 -0.0017843 -2.3657 -0.001593 673.8484671008383 58.148 0.34831 57.658 57.471 57.819 -0.48974 29 16 2 0 0 0 0.17129 1 31556 31556 34.222 11.564 1 3235400 35833 4005 23845 24309 42223 42223 0.024081599718329016 LPQPWRADVTY 11 Unmodified _LPQPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.3496704101562 2 673.348594 1344.68264 1.0371 0.00069835 0.32773 0.00022067 1.3649 0.00091902 673.3488134878888 57.707 0.37775 57.641 57.418 57.795 -0.066036 53 18 4 0 0 0 0.0075717 2 31452 31353;31452 70.929 48.192 1 8979300 35834 4005 23845 24309 42224;42225 42225 0.024081599718329016 LPQPWRADVTY 11 Unmodified _LPQPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.3486938476562 2 673.348594 1344.68264 0.2123 0.00014295 0.034064 2.2937E-05 0.24636 0.00016589 673.3486009646679 65.748 0.59747 59.572 59.285 59.883 -6.1757 83 34 3 0 0 0 3.4633E-06 2 42742 42602;42742 98.73 68.889 1 36744000 35835 4005 23845 24309 42226;42227 42227 0.024081599718329016 LPQPWRADVTY 11 Unmodified _LPQPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MSMS AL20221201_MKP_PDAC_01 4 673.3484497070312 2 673.348594 1344.68264 NaN NaN NaN NaN NaN NaN NaN 64.845 1 58.67 58.17 59.17 -6.1757 0 0 0 4.7034E-07 1 42044 42044 94.909 52.953 1 35836 4005 23845 24309 42228 42228 0.024081599718329016 LPQQFMGL 8 Unmodified _LPQQFMGL_ 0 0 0 REV__ENST00000272972.7_1_2:241494422-241497352:-|nuORF REV__ENST00000272972.7_1_2:241494422-241497352:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2498474121094 2 467.246763 932.478974 0.31567 0.00014749 1.3761 0.00064296 1.6917 0.00079046 467.2492384219283 97.801 1.0903 97.558 97.045 98.135 -0.24277 231 47 6 0 0 0 0.80676 1 53172 53172 2.5775 0.51773 1 143640000 + 35837 25152 23846 24310 42229 42229 0.010033439966832702 LPQQFMGL 8 Unmodified _LPQQFMGL_ 0 0 0 REV__ENST00000272972.7_1_2:241494422-241497352:-|nuORF REV__ENST00000272972.7_1_2:241494422-241497352:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 467.246763 932.478974 2.7735 0.0012959 -0.11843 -5.5338E-05 2.6551 0.0012406 467.2482548625877 97.109 1.5997 97.102 96.747 98.347 -0.007019 -0.21629 -0.0011761 NaN 2.5775 160 59 5 NaN NaN NaN NaN 0 NaN NaN 0 101190000 + 35838 25152 23846 24310 0.010033439966832702 LPQQKKLPD 9 Unmodified _LPQQKKLPD_ 0 0 0 REV__ENST00000302326.4_1_22:28196961-28197462:-|nuORF REV__ENST00000302326.4_1_22:28196961-28197462:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8163452148438 2 533.816399 1065.61824 0.42906 0.00022904 -0.20054 -0.00010705 0.22852 0.00012199 533.8164434365689 52.061 0.35524 51.627 51.474 51.83 -0.43367 45 17 4 0 0 0 0.10734 1 28092 28092 32.305 0 1 10549000 + 35839 25329 23847 24311 42230 42230 0.08806004885695984 LPQQKKLPD 9 Unmodified _LPQQKKLPD_ 0 0 0 REV__ENST00000302326.4_1_22:28196961-28197462:-|nuORF REV__ENST00000302326.4_1_22:28196961-28197462:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.816399 1065.61824 0.41616 0.00022215 -0.60109 -0.00032087 -0.18493 -9.8721E-05 533.8166172058262 51.612 0.25267 51.612 51.5 51.753 0 -0.0074913 -0.00034461 NaN 32.305 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2696400 + 35840 25329 23847 24311 0.08806004885695984 LPQQLPECK 9 Unmodified _LPQQLPECK_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2;ENST00000431180.5_1_3:47122459-47155398:-|nuORF ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MSMS AL20221201_MKP_PDAC_01 4 528.2838745117188 2 528.281334 1054.54812 NaN NaN NaN NaN NaN NaN NaN 102.27 1 96.096 95.596 96.596 -6.1757 0 0 0 0.20498 1 68636 68636 30.225 9.3536 1 35841 8979 23848 24312 42231 42231 0.023023832255830712 LPQRPNARL 9 Unmodified _LPQRPNARL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.548583984375 3 355.548964 1063.62506 0.11317 4.0239E-05 0.23527 8.3648E-05 0.34844 0.00012389 355.54900252895436 25.539 0.17425 25.564 25.462 25.636 0.025787 21 9 3 0 0 0 0.023481 1 13193 13193 60.074 12.325 1 36822000 35842 9879 23849 24313 42232 42232 0.09579362556928572 LPQRPNARL 9 Unmodified _LPQRPNARL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5491333007812 3 355.548964 1063.62506 1.4316 0.00050899 -0.39733 -0.00014127 1.0342 0.00036772 355.54876607160355 28.885 0.57835 25.711 25.332 25.91 -3.1745 80 30 3 0 0 0 0.047788 1 16232 16232 45.7 18.476 1 282420000 35843 9879 23849 24313 42233 42233 0.09579362556928572 LPQRPNARL 9 Unmodified _LPQRPNARL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.548964 1063.62506 -0.44938 -0.00015978 0.12892 4.5839E-05 -0.32046 -0.00011394 355.5489917153912 25.684 0.18772 25.684 25.57 25.758 0 0.031104 0.00025111 NaN 60.074 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 491430 35844 9879 23849 24313 0.09579362556928572 LPQRSCSGGSC 11 Unmodified _LPQRSCSGGSC_ 0 0 0 ENST00000427765.1_3_9:96326725-96326812:+|nuORF ENST00000427765.1_3_9:96326725-96326812:+|nuORF ENST00000427765.1_3_9:96326725-96326812:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.4946899414062 3 365.495431 1093.46446 NaN NaN NaN NaN NaN NaN NaN 84.52 1 84.02 83.52 84.52 -0.49961 0 0 0 0.93933 1 46251 46251 1.2148 0.021489 1 35845 13198 23850 24314 42234 42234 -0.07853096213739263 LPQRVPNSY 9 Unmodified _LPQRVPNSY_ 0 0 0 REV__ENST00000460291.1_1_3:11383675-11389548:+|nuORF REV__ENST00000460291.1_1_3:11383675-11389548:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 537.2918701171875 2 537.290548 1072.56654 NaN NaN NaN NaN NaN NaN NaN 48.991 1 43.595 43.095 44.095 -5.3961 0 0 0 0.22437 1 30560 30560 29.082 1.4528 1 + 35846 23936 23851 24315 42235 42235 0.033162611917987306 LPQSLAHPGF 10 Unmodified _LPQSLAHPGF_ 0 0 0 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2926025390625 2 533.787641 1065.56073 0.68512 0.00036571 0.2761 0.00014738 0.96122 0.00051309 533.7877169489415 57.736 0.8429 51.708 51.313 52.156 -6.0275 156 46 5 0 0 0 0.5905 1 36762 36762 11.64 3.047 1 969400000 35847 3668 23852 24316 42236 42236 0.030571626801247476 LPQSSRLLV 9 Unmodified _LPQSSRLLV_ 0 0 0 REV__ENST00000426597.2_1_1:32705501-32706166:-|nuORF REV__ENST00000426597.2_1_1:32705501-32706166:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.251220703125 2 506.811116 1011.60768 1.0761 0.00054537 -1.077 -0.00054583 -0.00092144 -4.67E-07 506.81077684343273 55.327 0.31746 49.406 49.208 49.525 -5.9211 29 19 2 0 0 0 0.17331 1 35128 35128 22.736 0 1 15833000 + 35848 26910 23853 24317 42237 42237 0.1023402223128187 LPQSTVPEM 9 Oxidation (M) _LPQSTVPEM(Oxidation (M))_ LPQSTVPEM(1) LPQSTVPEM(46) 0 0 1 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2499084472656 2 509.2497 1016.48485 -0.38994 -0.00019858 2.7728 0.0014121 2.3829 0.0012135 509.2508858135691 30.07 0.27176 30.07 29.888 30.16 0 17 12 2 0 0 0 0.047196 1 15604 15604 46.021 11.919 1 1510400 35849 1969;16092 23854 24318 42238 42238 336 -0.02273602282309639 LPQTEHCVHLT 11 Unmodified _LPQTEHCVHLT_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF;nc|ENSG00000115970|Q6YHU6-4|THADA nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.3184204101562 2 639.31898 1276.62341 0.22737 0.00014536 -1.1724 -0.00074955 -0.94505 -0.00060419 639.3179270833799 36.157 0.15463 36.157 36.074 36.229 0 14 7 3 0 0 0 0.50515 1 19169 19169 16.149 0.90062 1 4571800 35850 3181 23855 24319 42239 42239 -0.003840593139784687 LPQTRRISL 9 Unmodified _LPQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3353271484375 2 542.33529 1082.65603 0.13618 7.3853E-05 -0.90157 -0.00048895 -0.76539 -0.0004151 542.3349201217576 34.282 0.21223 34.31 34.203 34.416 0.027401 19 9 3 0 0 0 0.12424 1 18056 18056 30.637 8.8899 1 3940500 35851 10109 23856 24320 42240 42240 0.1180051587118669 LPQTRRISL 9 Unmodified _LPQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8927612304688 3 361.892619 1082.65603 0.058593 2.1204E-05 0.39761 0.00014389 0.45621 0.0001651 361.8927668081833 34.289 0.50531 34.316 34.143 34.648 0.027401 57 23 4 0 0 0 0.23158 1 18124 18124 24.991 13.473 1 55336000 35852 10109 23856 24320 42241 42241 0.1180051587118669 LPQTRRISL 9 Unmodified _LPQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8932495117188 3 361.892619 1082.65603 1.1611 0.00042018 0.54127 0.00019588 1.7023 0.00061606 361.89277498129917 38.452 0.47516 34.083 33.814 34.29 -4.3689 69 29 4 0 0 0 0.19127 1 22665 22665 34.932 34.932 1 177110000 35853 10109 23856 24320 42242 42242 0.1180051587118669 LPQTRRISL 9 Unmodified _LPQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.335205078125 2 542.33529 1082.65603 0.34827 0.00018888 -0.35452 -0.00019227 -0.0062448 -3.3868E-06 542.3351689091584 38.484 0.3173 34.115 33.916 34.234 -4.3689 28 19 2 0 0 0 0.38785 1 22668 22668 13.042 2.9685 1 25643000 35854 10109 23856 24320 42243 42243 0.1180051587118669 LPQTRRISL 9 Unmodified _LPQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 361.892619 1082.65603 1.1611 0.00042018 0.54127 0.00019588 1.7023 0.00061606 361.89277498129917 38.452 0.47516 34.083 33.814 34.29 -4.3689 -0.11688 8.5145E-05 NaN 34.932 69 29 4 NaN NaN NaN NaN 0 NaN NaN 0 177110000 35855 10109 23856 24320 0.1180051587118669 LPQTSHVSF 9 Unmodified _LPQTSHVSF_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON;nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2648620605469 2 508.263999 1014.51345 -0.0057069 -2.9006E-06 -1.0019 -0.00050923 -1.0076 -0.00051213 508.26378284990676 40.112 0.44494 39.815 39.649 40.094 -0.29716 61 20 5 0 0 0 0.0082475 2 21144 21144;21249 92.653 48.246 1 34893000 35856 6629 23857 24321 42244;42245 42244 0.006768834091417375 LPQTSHVSF 9 Unmodified _LPQTSHVSF_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON;nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.264404296875 2 508.263999 1014.51345 0.39675 0.00020166 0.30668 0.00015587 0.70343 0.00035753 508.26401311936525 44.995 0.47826 40.143 39.863 40.342 -4.852 101 31 4 0 0 0 0.011671 2 27543 27406;27543 75.761 35.804 1 175130000 35857 6629 23857 24321 42246;42247 42247 0.006768834091417375 LPQTSHVSF 9 Unmodified _LPQTSHVSF_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON;nc|ENSG00000159147|Q9NYP3-2|DONSON;nc|ENSG00000159147|Q9NYP3-3|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.263999 1014.51345 0.53177 0.00027028 -0.30256 -0.00015378 0.22921 0.0001165 508.7657417389385 39.716 0.22593 39.721 39.647 39.873 0.0050583 -0.14003 -0.00021976 NaN 92.653 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 919810 35858 6629 23857 24321 0.006768834091417375 LPQTYDLRFI 10 Unmodified _LPQTYDLRFI_ 0 0 0 REV__ENSG00000197953|ENST00000356517|AADACL2 REV__ENSG00000197953|ENST00000356517|AADACL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.569580078125 3 422.567801 1264.68157 NaN NaN NaN NaN NaN NaN NaN 30.899 1 30.797 30.297 31.297 -0.10269 0 0 0 0.97302 1 16046 16046 1.7423 0.52744 1 + 35859 23972 23858 24322 42248 42248 0.05981945602957239 LPQVDRHTVY 10 Unmodified _LPQVDRHTVY_ 0 0 0 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-7|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8876037597656 3 409.887533 1226.64077 0.88005 0.00036072 -0.3098 -0.00012698 0.57025 0.00023374 409.88748048323004 36.273 0.2303 32.08 31.87 32.1 -4.1928 22 13 2 0 0 0 0.17714 1 21138 21138 37.771 14.996 1 8605800 35860 6374 23859 24323 42249 42249 0.0365160428332274 LPQVLDVFY 9 Unmodified _LPQVLDVFY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.299072265625 2 547.30005 1092.58555 0.85361 0.00046718 -0.39418 -0.00021573 0.45944 0.00025145 547.2997815013382 100.5 0.13464 94.326 94.254 94.389 -6.1757 13 7 2 0 0 0 0.28023 1 67223 67223 18.146 2.2992 1 54867000 35861 8296;16388 23860 24324 42250 42250 0.04295797762847542 LPQVQNTAM 9 Oxidation (M) _LPQVQNTAM(Oxidation (M))_ LPQVQNTAM(1) LPQVQNTAM(48) 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.256103515625 2 509.255317 1016.49608 -0.2626 -0.00013373 0.2044 0.00010409 -0.058196 -2.9637E-05 509.2555575626967 28.822 0.3405 28.822 28.641 28.982 0 54 16 5 0 0 0 0.042911 2 14868 14868;14970 48.346 24.325 1 30910000 35862 8379;16567 23861 24325 42251;42252 42251 1425 -0.011507801881748492 LPQVQNTAM 9 Oxidation (M) _LPQVQNTAM(Oxidation (M))_ LPQVQNTAM(1) LPQVQNTAM(48) 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7565612792969 2 509.255317 1016.49608 0.33416 0.00017017 0.2493 0.00012696 0.58346 0.00029713 509.2553745141271 28.836 0.20612 28.774 28.67 28.876 -0.062159 12 8 2 0 0 0 0.042911 1 14895 14895 48.346 17.709 1 3087900 35863 8379;16567 23861 24325 42253 42253 1425 -0.011507801881748492 LPQVQNTAM 9 Oxidation (M) _LPQVQNTAM(Oxidation (M))_ LPQVQNTAM(1) LPQVQNTAM(89) 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2556762695312 2 509.255317 1016.49608 1.2381 0.00063049 0.038722 1.972E-05 1.2768 0.00065021 509.25543797158184 34.004 0.56317 30.019 29.693 30.256 -3.9853 92 30 4 0 0 0 0.008678 1 19622 19622 88.904 24.667 1 87766000 35864 8379;16567 23861 24325 42254 42254 1425 -0.011507801881748492 LPQVQNTAM 9 Unmodified _LPQVQNTAM_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2577209472656 2 501.257859 1000.50117 0.99387 0.00049819 -0.1744 -8.7421E-05 0.81947 0.00041077 501.2575869243425 48.302 0.49331 43.068 42.808 43.302 -5.2339 76 29 3 0 0 0 0.013323 3 29967 29967;30097;30232 71.134 22.788 1 130250000 35865 8379;16567 23861 24326 42255;42256;42257 42255 0.000935236744339818 LPQWRIYSY 9 Unmodified _LPQWRIYSY_ 0 0 0 ENSG00000163347|ENST00000295522|CLDN1 ENSG00000163347|ENST00000295522|CLDN1 ENSG00000163347|ENST00000295522|CLDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3223266601562 2 613.321848 1224.62914 0.93413 0.00057292 0.0902 5.5321E-05 1.0243 0.00062824 613.3221636763338 64.739 0.2767 64.739 64.578 64.854 7.6294E-06 34 13 4 0 0 0 0.0047067 1 35440 35440 118.07 72.047 1 5697800 35866 6980 23862 24327 42258 42258 0.025814072599814608 LPQYHDTAW 9 Unmodified _LPQYHDTAW_ 0 0 0 REV__nc|ENSG00000148835|Q15542-2|TAF5 REV__nc|ENSG00000148835|Q15542-2|TAF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3154296875 2 565.766906 1129.51926 0.77335 0.00043753 -0.43621 -0.00024679 0.33714 0.00019074 565.7665259968156 47.831 0.18886 47.792 47.68 47.869 -0.038643 10 8 2 0 0 0 0.21242 1 25740 25740 5.2307 0 1 607840 + 35867 20972 23863 24328 42259 42259 -0.04032018079192312 LPQYHDTAW 9 Unmodified _LPQYHDTAW_ 0 0 0 REV__nc|ENSG00000148835|Q15542-2|TAF5 REV__nc|ENSG00000148835|Q15542-2|TAF5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 565.766906 1129.51926 1.386 0.00078414 -3.0957 -0.0017515 -1.7098 -0.00096732 565.7660619348918 53.685 0.084488 47.881 47.815 47.899 -5.8042 0.044473 -0.0019449 NaN 5.2307 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 9943100 + 35868 20972 23863 24328 -0.04032018079192312 LPQYQVTVP 9 Unmodified _LPQYQVTVP_ 0 0 0 nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7 nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7 nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.2564697265625 2 522.78985 1043.56515 0.71159 0.00037201 -2.2896 -0.001197 -1.578 -0.00082496 522.7901783407877 68.155 0.23019 61.979 61.816 62.046 -6.1757 19 12 2 0 0 0 0.19613 1 44496 44496 12.532 3.1841 1 11621000 35869 10764 23864 24329 42260 42260 0.045106271030590506 LPQYVSNEL 9 Unmodified _LPQYVSNEL_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7763671875 2 531.776939 1061.53933 -0.425 -0.00022601 0.62478 0.00033224 0.19978 0.00010624 531.7773463051858 55.377 0.22523 55.377 55.305 55.531 0 16 9 2 0 0 0 0.34999 1 30776 30776 14.838 4.0143 1 2246500 35870 5827 23865 24330 42261 42261 0.011017328607522359 LPRAAVHF 8 Unmodified _LPRAAVHF_ 0 0 0 ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7669067382812 2 455.766512 909.518471 0.37185 0.00016948 1.2414 0.00056577 1.6132 0.00073524 455.76688269643415 72.728 0.44084 72.77 72.527 72.968 0.041733 52 20 4 0 0 0 0.80624 1 40002 40002 2.8892 2.0956 1 13577000 35871 11532 23866 24331 42262 42262 0.06009232062422143 LPRAAVHF 8 Unmodified _LPRAAVHF_ 0 0 0 ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 455.766512 909.518471 0.73196 0.0003336 1.9041 0.00086782 2.636 0.0012014 455.76728842472033 72.898 0.29013 72.898 72.762 73.052 0 0.049963 0.0004021 NaN 2.8892 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1461500 35872 11532 23866 24331 0.06009232062422143 LPRAAVHF 8 Unmodified _LPRAAVHF_ 0 0 0 ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 455.766512 909.518471 0.57815 0.0002635 1.0573 0.0004819 1.6355 0.00074541 455.76699441726055 73.352 0.32235 72.876 72.674 72.996 -0.47588 0.028053 -0.00036974 NaN 2.8892 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 963430 35873 11532 23866 24331 0.06009232062422143 LPRAGGAFL 9 Unmodified _LPRAGGAFL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3;LAMB3|p.A832S|1|0.09|ENSG00000196878|chr1:209623044-209623044|C/A|missense_variant ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.266845703125 2 451.266345 900.518136 1.2551 0.00056638 0.51845 0.00023396 1.7735 0.00080033 451.26652294136704 55.087 0.55294 49.166 48.921 49.474 -5.9211 79 34 3 0 0 0 0.07916 2 34912 34912;35058 37.974 3.8716 1 75386000 35874 9879 23867 24332 42263;42264 42263 0.06389812342570167 LPRAGGPLGL 10 Unmodified _LPRAGGPLGL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.792724609375 2 475.792727 949.5709 -0.23336 -0.00011103 0.4204 0.00020002 0.18704 8.8993E-05 475.7929503452578 53.899 0.1954 53.832 53.725 53.921 -0.066936 15 9 2 0 0 0 0.16524 1 29263 29263 37.974 1.9298 1 1891400 35875 8930 23868 24333 42265 42265 0.09409770405375184 LPRAGVLRLG 10 Unmodified _LPRAGVLRLG_ 0 0 0 REV__ENSG00000099377|ENST00000297679|HSD3B7 REV__ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.340576171875 2 526.340375 1050.6662 0.92042 0.00048445 -0.30648 -0.00016131 0.61394 0.00032314 526.3401536499285 81.717 0.69341 75.541 75.308 76.001 -6.1757 67 39 2 0 0 0 0.52888 1 53853 53853 14.838 0 1 12540000 + 35876 17978 23869 24334 42266 42266 0.14289123596404352 LPRAIGDSVAF 11 Unmodified _LPRAIGDSVAF_ 0 0 0 ENST00000555243.1_1_14:89016912-89017582:-|nuORF;ENST00000556564.5_1_14:89016912-89021018:-|nuORF ENST00000555243.1_1_14:89016912-89017582:-|nuORF ENST00000555243.1_1_14:89016912-89017582:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3185424804688 2 573.319306 1144.62406 0.54807 0.00031422 -2.3492 -0.0013468 -1.8011 -0.0010326 573.3171667412431 57.122 0.3243 56.637 56.453 56.777 -0.48554 28 14 3 0 0 0 0.22582 1 31058 31058 30.703 1.6219 1 6589500 35877 15225 23870 24335 42267 42267 0.05753103397364612 LPRAISGLST 10 Unmodified _LPRAISGLST_ 0 0 0 REV__ENST00000554302.1_1_15:91498777-91498930:+|nuORF REV__ENST00000554302.1_1_15:91498777-91498930:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2743225097656 2 507.800749 1013.58694 0.36158 0.00018361 -0.58581 -0.00029748 -0.22423 -0.00011387 508.30163695365115 47.261 0.22253 46.908 46.798 47.02 -0.3526 18 10 2 0 0 0 0.20941 1 25368 25368 26.884 7.6267 1 3412300 + 35878 28751 23871 24336 42268 42268 0.08069431851606623 LPRAISGLST 10 Unmodified _LPRAISGLST_ 0 0 0 REV__ENST00000554302.1_1_15:91498777-91498930:+|nuORF REV__ENST00000554302.1_1_15:91498777-91498930:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.800749 1013.58694 0.35018 0.00017782 -0.99439 -0.00050495 -0.64422 -0.00032713 507.80040587315773 47.055 0.25169 47.055 46.941 47.192 0 0.073499 -0.00019506 NaN 26.884 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3830300 + 35879 28751 23871 24336 0.08069431851606623 LPRAPRSSYL 10 Unmodified _LPRAPRSSYL_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2233276367188 3 387.224257 1158.65094 1.6058 0.00062181 -0.74902 -0.00029004 0.8568 0.00033177 387.22389526418016 37.594 0.36444 33.247 33.039 33.403 -4.347 32 21 2 0 0 0 0.44171 1 22047 22047 17.049 7.5046 1 12554000 35880 8564 23872 24337 42269 42269 0.07796212008588554 LPRAVGTQTL 10 Unmodified _LPRAVGTQTL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;ENST00000560260.5_1_15:64422114-64427054:+|nuORF nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3142700195312 2 528.314023 1054.61349 0.69812 0.00036883 0.3389 0.00017905 1.037 0.00054788 528.314234251771 43.581 0.44591 38.816 38.633 39.079 -4.7648 59 27 3 0 0 0 0.02847 1 26428 26428 70.332 10.258 1 26875000 35881 574 23873 24338 42270 42270 0.08837120742964544 LPRAVNTQAL 10 Unmodified _LPRAVNTQAL_ 0 0 0 nc|ENSG00000205302|O60749-2|SNX2;ENSG00000205302|ENST00000379516|SNX2 nc|ENSG00000205302|O60749-2|SNX2 nc|ENSG00000205302|O60749-2|SNX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8182983398438 2 541.819473 1081.62439 0.42099 0.0002281 -1.6707 -0.00090523 -1.2497 -0.00067713 541.8183371779501 44.276 0.41031 39.424 39.172 39.582 -4.852 67 29 3 0 0 0 0.087043 1 26987 26987 49.554 5.696 1 35118000 35882 10358 23874 24339 42271 42271 0.08684523117221943 LPRAWPPR 8 Unmodified _LPRAWPPR_ 0 0 0 REV__ENSG00000162878|ENST00000294964|PKDCC REV__ENSG00000162878|ENST00000294964|PKDCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7921142578125 2 496.793061 991.571569 1.3501 0.00067074 -1.3101 -0.00065086 0.040019 1.9881E-05 496.792779111755 94.325 0.28748 88.149 88.012 88.299 -6.1757 36 16 3 0 0 0 0.5284 1 62452 62452 32.117 5.7757 1 10967000 + 35883 21700 23875 24340 42272 42272 0.0754460984508114 LPRAWPVHF 9 Unmodified _LPRAWPVHF_ 0 0 0 REV__ENST00000399212.5_1_21:37431225-37432751:-|nuORF REV__ENST00000399212.5_1_21:37431225-37432751:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2245178222656 3 374.878421 1121.61343 -0.055138 -2.067E-05 0.93005 0.00034865 0.87491 0.00032798 374.8802870034112 33.013 0.20746 33.043 32.979 33.186 0.029747 9 8 2 0 0 0 0.203 1 17350 17350 1.1933 0.23107 1 204660 + 35884 26580 23876 24341 42273 42273 0.057491655335979885 LPRAWPVHF 9 Unmodified _LPRAWPVHF_ 0 0 0 REV__ENST00000399212.5_1_21:37431225-37432751:-|nuORF REV__ENST00000399212.5_1_21:37431225-37432751:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 374.878421 1121.61343 -0.25685 -9.6287E-05 3.7055 0.0013891 3.4487 0.0012928 374.880080284474 33.584 0.23695 33.424 33.27 33.507 -0.15918 0.19096 0.00038091 NaN 1.1933 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 911870 + 35885 26580 23876 24341 0.057491655335979885 LPRDEADALY 10 Unmodified _LPRDEADALY_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7901611328125 2 581.790578 1161.5666 0.17864 0.00010393 0.13117 7.6313E-05 0.30981 0.00018024 581.7906476352526 39.821 0.3119 39.821 39.661 39.973 0 48 15 4 0 0 0 0.13008 2 21331 21331;21440 42.312 18.523 1 14421000 35886 4058 23877 24342 42274;42275 42274 -0.007717835988614752 LPRDEADEL 9 Unmodified _LPRDEADEL_ 0 0 0 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 ENSG00000128335|ENST00000358502|APOL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.260498046875 2 529.261653 1056.50875 0.61832 0.00032726 -1.5756 -0.00083389 -0.95724 -0.00050663 529.2611874561937 36.582 0.32859 32.298 32.143 32.472 -4.2835 34 20 2 0 0 0 0.015688 1 21335 21335 67.838 17.905 1 25378000 35887 4064 23878 24343 42276 42276 -0.017240455242927055 LPRDHPESY 9 Unmodified _LPRDHPESY_ 0 0 0 ENSG00000113552|ENST00000311337|GNPDA1 ENSG00000113552|ENST00000311337|GNPDA1 ENSG00000113552|ENST00000311337|GNPDA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2705078125 2 557.269813 1112.52507 -0.14994 -8.3556E-05 1.5778 0.00087927 1.4279 0.00079571 557.2701112025836 18.686 0.10524 18.686 18.634 18.739 0 12 9 2 0 0 0 0.52844 1 9310 9310 5.7319 1.4026 1 324230 35888 2973 23879 24344 42277 42277 -0.026689195675317023 LPRDIIENY 9 Unmodified _LPRDIIENY_ 0 0 0 ENST00000233143.5_1_2:85133620-85133770:+|nuORF ENST00000233143.5_1_2:85133620-85133770:+|nuORF ENST00000233143.5_1_2:85133620-85133770:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3128051757812 2 566.803488 1131.59242 0.63967 0.00036257 0.85976 0.00048731 1.4994 0.00084988 566.8032600307968 49.354 0.27016 49.354 49.194 49.465 0 22 12 2 0 0 0 0.052231 1 27119 27119 55.503 23.197 1 18019000 35889 11076 23880 24345 42278 42278 0.03189110643438653 LPRDIIENY 9 Unmodified _LPRDIIENY_ 0 0 0 ENST00000233143.5_1_2:85133620-85133770:+|nuORF ENST00000233143.5_1_2:85133620-85133770:+|nuORF ENST00000233143.5_1_2:85133620-85133770:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8043823242188 2 566.803488 1131.59242 1.136 0.00064389 2.4142 0.0013684 3.5503 0.0020123 566.8036942873741 55.611 0.46703 49.69 49.426 49.893 -5.9211 60 27 3 0 0 0 0.21377 1 35428 35428 28.495 6.9575 1 46390000 35890 11076 23880 24345 42279 42279 0.03189110643438653 LPRDPSSEV 9 Unmodified _LPRDPSSEV_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2590026855469 2 500.258914 998.503274 NaN NaN NaN NaN NaN NaN NaN 27.128 1 27.128 26.628 27.628 0 0 0 0 0.39118 1 13968 13968 20.415 5.5763 1 35891 10186 23881 24346 42280 42280 0.003962756839086978 LPREDGNLML 10 Unmodified _LPREDGNLML_ 0 0 0 nc|ENSG00000145901|Q15025-7|TNIP1;nc|ENSG00000145901|Q15025-8|TNIP1;nc|ENSG00000145901|Q15025-5|TNIP1;nc|ENSG00000145901|Q15025-6|TNIP1;nc|ENSG00000145901|Q15025-4|TNIP1;nc|ENSG00000145901|Q15025-3|TNIP1;nc|ENSG00000145901|Q15025-2|TNIP1;ENSG00000145901|ENST00000521591|TNIP1 nc|ENSG00000145901|Q15025-7|TNIP1 nc|ENSG00000145901|Q15025-7|TNIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3026123046875 2 579.302798 1156.59104 1.1413 0.00066114 -1.5226 -0.00088206 -0.38135 -0.00022091 579.3018476126978 90.564 0.57043 84.388 84.074 84.644 -6.1757 62 33 2 0 0 0 0.20962 1 59938 59938 32.786 0 1 18177000 35892 5737 23882 24347 42281 42281 0.019011532830063516 LPREELWIY 9 Unmodified _LPREELWIY_ 0 0 0 ENSG00000165516|ENST00000298307|KLHDC2;ENST00000553703.1_1_14:50238344-50241516:+|nuORF;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8308715820312 2 609.829506 1217.64446 0.51468 0.00031387 -0.020169 -1.23E-05 0.49452 0.00030157 609.8293780677005 71.178 0.31418 70.7 70.547 70.861 -0.47735 34 13 3 0 0 0 0.21643 2 38918 38918;39033 21.537 5.6898 1 6434500 35893 7353 23883 24348 42282;42283 42282 0.044342740571892136 LPREELWIY 9 Unmodified _LPREELWIY_ 0 0 0 ENSG00000165516|ENST00000298307|KLHDC2;ENST00000553703.1_1_14:50238344-50241516:+|nuORF;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8301391601562 2 609.829506 1217.64446 0.92667 0.00056511 -0.4161 -0.00025375 0.51056 0.00031136 609.8295619597126 87.267 0.94923 81.091 80.546 81.495 -6.1757 146 51 4 0 0 0 0.011671 4 57361 57248;57361;57503;57625 75.761 42.975 1 58593000 35894 7353 23883 24348 42284;42285;42286;42287 42285 0.044342740571892136 LPREELWIY 9 Unmodified _LPREELWIY_ 0 0 0 ENSG00000165516|ENST00000298307|KLHDC2;ENST00000553703.1_1_14:50238344-50241516:+|nuORF;nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.829506 1217.64446 1.0154 0.00061923 0.47806 0.00029154 1.4935 0.00091076 609.8297877412347 70.579 0.33922 70.615 70.424 70.763 0.035515 -0.042699 0.00037008 NaN 21.537 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3109500 35895 7353 23883 24348 0.044342740571892136 LPRELEENEI 10 Unmodified _LPRELEENEI_ 0 0 0 REV__ENSG00000047365|ENST00000303965|ARAP2 REV__ENSG00000047365|ENST00000303965|ARAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8209228515625 2 621.322242 1240.62993 -0.0078464 -4.8751E-06 -1.2485 -0.00077572 -1.2563 -0.00078059 621.3216170430143 30.983 0.19851 30.983 30.872 31.071 0 20 9 3 0 0 0 0.21783 1 16099 16099 24.021 1.2843 1 4876000 + 35896 17225 23884 24349 42288 42288 0.01924157118378389 LPRERIDNL 9 Unmodified _LPRERIDNL_ 0 0 0 ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2;ENST00000507169.5_1_5:70888767-70898477:+|nuORF ENSG00000131844|ENST00000340941|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.783447265625 2 563.32238 1124.63021 -0.10823 -6.097E-05 1.0416 0.00058677 0.93339 0.0005258 563.3227237578573 23.926 0.18438 23.926 23.832 24.016 0 20 8 3 0 0 0 0.21367 1 12181 12181 4.756 0.81161 1 1779500 35897 4355 23885 24350 42289 42289 0.07287621628870511 LPRESSYDIY 10 Unmodified _LPRESSYDIY_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.8043823242188 2 621.803685 1241.59282 0.54825 0.0003409 0.78425 0.00048765 1.3325 0.00082855 621.8038500630583 42.323 0.32807 42.323 42.179 42.507 0 43 15 4 0 0 0 0.10406 2 22876 22876;22993 45.74 27.594 1 15876000 35898 2300 23886 24351 42290;42291 42290 -0.018315144273856276 LPRESSYDIY 10 Unmodified _LPRESSYDIY_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8040161132812 2 621.803685 1241.59282 0.38387 0.00023869 0.35738 0.00022222 0.74126 0.00046092 621.8037509235315 48.123 0.3947 42.889 42.711 43.106 -5.2339 59 23 3 0 0 0 0.061704 1 29896 29896 55.235 32.498 1 41700000 35899 2300 23886 24351 42292 42292 -0.018315144273856276 LPRETLAF 8 Unmodified _LPRETLAF_ 0 0 0 nc|ENSG00000007255|O75865-2|TRAPPC6A;ENSG00000007255|ENST00000585934|TRAPPC6A;ENST00000587818.1_1_19:45668074-45681461:-|nuORF nc|ENSG00000007255|O75865-2|TRAPPC6A nc|ENSG00000007255|O75865-2|TRAPPC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7719421386719 2 473.77146 945.528367 0.55363 0.00026229 0.22193 0.00010514 0.77555 0.00036744 473.7716510580241 53.511 0.28834 53.06 52.878 53.167 -0.45173 20 13 2 0 0 0 0.73714 1 28985 28985 13.906 1.3745 1 1442000 35900 362 23887 24352 42293 42293 0.05342375277132305 LPREVDPLVY 10 Unmodified _LPREVDPLVY_ 0 0 0 ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;ENST00000557085.1_1_14:53177833-53180694:+|nuORF;ENST00000216407.4_1_12:68867655-68868498:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.834716796875 2 600.834788 1199.65502 0.030638 1.8408E-05 0.25392 0.00015256 0.28456 0.00017097 600.8348807160239 58.419 0.35514 58.419 58.179 58.535 0 33 13 3 0 0 0 0.32072 1 32487 32487 26.268 5.8536 1 3503500 35901 1838 23888 24353 42294 42294 0.06318256711597314 LPREVDPLVY 10 Unmodified _LPREVDPLVY_ 0 0 0 ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;ENST00000557085.1_1_14:53177833-53180694:+|nuORF;ENST00000216407.4_1_12:68867655-68868498:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.3369750976562 2 600.834788 1199.65502 0.3077 0.00018488 0.67533 0.00040576 0.98303 0.00059064 601.3369262577481 58.883 0.24456 58.392 58.29 58.535 -0.49079 23 11 3 0 0 0 0.32072 1 32062 32062 26.268 9.1552 1 1281700 35902 1838 23888 24353 42295 42295 0.06318256711597314 LPREVDPLVY 10 Unmodified _LPREVDPLVY_ 0 0 0 ENST00000458604.6_1_14:53173986-53184887:+|nuORF;ENSG00000100519|ENST00000445930|PSMC6;ENST00000557085.1_1_14:53177833-53180694:+|nuORF;ENST00000216407.4_1_12:68867655-68868498:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF ENST00000458604.6_1_14:53173986-53184887:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 600.7890014648438 2 600.834788 1199.65502 0.28111 0.0001689 0.47317 0.0002843 0.75429 0.0004532 600.8350747948917 64.81 0.40114 58.634 58.54 58.941 -6.1757 32 21 2 0 0 0 0.23558 1 42068 42068 4.897 1.9018 1 6934100 35903 1838 23888 24353 42296 42296 0.06318256711597314 LPRFIHCL 8 Unmodified _LPRFIHCL_ 0 0 0 REV__ENST00000511080.5_1_5:147774339-147795515:+|nuORF REV__ENST00000511080.5_1_5:147774339-147795515:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.7843017578125 2 499.783847 997.553142 NaN NaN NaN NaN NaN NaN NaN 44.571 1 39.719 39.219 40.219 -4.852 0 0 0 0.70013 1 27228 27228 28.173 0 1 + 35904 28153 23889 24354 42297 42297 0.05426731878856117 LPRFSWEPHR 10 Unmodified _LPRFSWEPHR_ 0 0 0 ENST00000577646.5_3_17:38465473-38487137:+|nuORF ENST00000577646.5_3_17:38465473-38487137:+|nuORF ENST00000577646.5_3_17:38465473-38487137:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.3794555664062 2 662.849096 1323.68364 0.59001 0.00039109 1.3836 0.00091709 1.9736 0.0013082 662.8502874414365 73.742 0.8207 73.786 73.361 74.182 0.043983 41 37 2 0 0 0 0.23634 1 40677 40677 6.7232 1.8262 1 1528200 35905 15532 23890 24355 42298 42298 0.034744191313848205 LPRFVRVNTL 10 Unmodified _LPRFVRVNTL_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF nc|ENSG00000130305|Q96P11-5|NSUN5 nc|ENSG00000130305|Q96P11-5|NSUN5 MSMS AL20221201_MKP_PDAC_01 4 405.5841979980469 3 405.583785 1213.72953 NaN NaN NaN NaN NaN NaN NaN 80.91 1 74.734 74.234 75.234 -6.1757 0 0 0 0.73897 1 53088 53088 14.957 1.4385 1 35906 4201 23891 24356 42299 42299 0.13121064313645547 LPRGEEHAK 9 Unmodified _LPRGEEHAK_ 0 0 0 ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10 ENSG00000065328|ENST00000378714|MCM10 ENSG00000065328|ENST00000378714|MCM10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2345581054688 2 518.780348 1035.54614 0.73732 0.00038251 -0.22682 -0.00011767 0.51049 0.00026483 518.7803253997815 18.333 0.2307 15.711 15.594 15.824 -2.6215 26 16 2 0 0 0 0.20554 1 9682 9682 5.7319 5.7319 1 2215000 35907 899 23892 24357 42300 42300 0.029790905319941885 LPRGFGSLPAL 11 Unmodified _LPRGFGSLPAL_ 0 0 0 ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1;ENSG00000148484|ENST00000345264|RSU1 ENST00000464074.6_1_10:16769067-16859404:-|nuORF ENST00000464074.6_1_10:16769067-16859404:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3322143554688 2 564.332216 1126.64988 0.41662 0.00023511 0.15503 8.749E-05 0.57166 0.0003226 564.332273754378 72.55 0.33804 72.592 72.465 72.803 0.041725 26 15 2 0 0 0 0.18636 1 39957 39957 32.786 15.673 1 2362000 35908 5939 23893 24358 42301 42301 0.09161997639648689 LPRGGRAR 8 Unmodified _LPRGGRAR_ 0 0 0 ENST00000304658.9_1_16:28222843-28223173:-|nuORF ENST00000304658.9_1_16:28222843-28223173:-|nuORF ENST00000304658.9_1_16:28222843-28223173:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7707214355469 2 441.77266 881.530767 0.62177 0.00027468 -3.6712 -0.0016219 -3.0495 -0.0013472 441.77121576825897 36.835 0.20446 36.835 36.732 36.936 0 20 9 3 0 0 0 0.80624 1 19555 19555 2.8892 0 1 2092300 35909 11605 23894 24359 42302 42302 0.08526268525451997 LPRGGRAR 8 Unmodified _LPRGGRAR_ 0 0 0 ENST00000304658.9_1_16:28222843-28223173:-|nuORF ENST00000304658.9_1_16:28222843-28223173:-|nuORF ENST00000304658.9_1_16:28222843-28223173:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 441.77266 881.530767 0.030358 1.3411E-05 -5.6914 -0.0025143 -5.6611 -0.0025009 441.7699657716781 36.825 0.29998 36.847 36.684 36.984 0.021545 0.0062443 -0.00021094 NaN 2.8892 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 15307000 35910 11605 23894 24359 0.08526268525451997 LPRGIGHLTNL 11 Unmodified _LPRGIGHLTNL_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5718994140625 3 397.571657 1189.69314 0.82098 0.0003264 -0.90653 -0.00036041 -0.08555 -3.4012E-05 397.5713967447057 47.1 0.22626 47.066 47.016 47.242 -0.033417 17 11 2 0 0 0 0.64126 1 25390 25390 9.2438 0.26753 1 5020500 35911 2544 23895 24360 42303 42303 0.10588187416942674 LPRGKDLIYF 10 Unmodified _LPRGKDLIYF_ 0 0 0 nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.9048156738281 3 407.904524 1220.69174 -0.53342 -0.00021758 0.43256 0.00017644 -0.10086 -4.1139E-05 407.9046467051132 55.763 0.31759 55.694 55.548 55.866 -0.068737 33 16 3 0 0 0 0.42143 2 30277 30277;30378 17.863 9.1114 1 23086000 35912 3381 23896 24361 42304;42305 42304 0.09022553328168215 LPRGKGIRL 9 Unmodified _LPRGKGIRL_ 0 0 0 ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3355102539062 2 505.335093 1008.65563 0.47867 0.00024189 -0.23894 -0.00012074 0.23973 0.00012115 505.3350293080235 27.15 0.27371 24.114 23.985 24.259 -3.0365 18 13 2 0 0 0 0.16226 1 15042 15042 26.884 3.7352 1 10957000 35913 4163;13855 23897 24362 42306 42306 0.15165140941985555 LPRGLFRSESL 11 Unmodified _LPRGLFRSESL_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5794982910156 3 425.5787 1273.71427 0.36563 0.00015561 0.40872 0.00017394 0.77435 0.00032955 425.5791037474919 48.468 0.23614 48.424 48.3 48.536 -0.04369 22 11 3 0 0 0 0.42115 1 26147 26147 20.411 4.1363 1 3348400 35914 3230 23898 24363 42307 42307 0.08836152725825741 LPRGLIGLR 9 Unmodified _LPRGLIGLR_ 0 0 0 REV__ENST00000557401.5_1_14:75158991-75179796:-|nuORF REV__ENST00000557401.5_1_14:75158991-75179796:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8298950195312 2 497.829643 993.644734 0.55961 0.00027859 0.17331 8.6278E-05 0.73292 0.00036487 497.82966946300115 43.292 0.23307 43.277 43.144 43.377 -0.015667 18 10 2 0 0 0 0.25681 1 23173 23173 19.257 0 1 8233200 + 35915 28788 23899 24364 42308 42308 0.14765738567700737 LPRGLIGLR 9 Unmodified _LPRGLIGLR_ 0 0 0 REV__ENST00000557401.5_1_14:75158991-75179796:-|nuORF REV__ENST00000557401.5_1_14:75158991-75179796:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.829643 993.644734 0.55961 0.00027859 0.17331 8.6278E-05 0.73292 0.00036487 497.82966946300115 43.292 0.23307 43.277 43.144 43.377 -0.015667 0 0 NaN 19.257 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8233200 + 35916 28788 23899 24364 0.14765738567700737 LPRGLSWK 8 Unmodified _LPRGLSWK_ 0 0 0 REV__ENSG00000196639|ENST00000431010|HRH1 REV__ENSG00000196639|ENST00000431010|HRH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7868041992188 2 478.787444 955.560336 -0.049987 -2.3933E-05 0.42005 0.00020111 0.37006 0.00017718 478.7876108475286 44.577 0.31269 44.555 44.386 44.698 -0.022064 39 16 3 0 0 0 0.40035 1 23874 23874 44.407 4.4497 1 35624000 + 35917 23853 23900 24365 42309 42309 0.08077787750949028 LPRGLSWK 8 Unmodified _LPRGLSWK_ 0 0 0 REV__ENSG00000196639|ENST00000431010|HRH1 REV__ENSG00000196639|ENST00000431010|HRH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 478.787444 955.560336 -0.049987 -2.3933E-05 0.42005 0.00020111 0.37006 0.00017718 478.7876108475286 44.577 0.31269 44.555 44.386 44.698 -0.022064 0 0 NaN 44.407 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 35624000 + 35918 23853 23900 24365 0.08077787750949028 LPRGMQPTEF 10 Oxidation (M) _LPRGM(Oxidation (M))QPTEF_ LPRGM(1)QPTEF LPRGM(96)QPTEF 0 0 1 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7962646484375 2 596.294973 1190.57539 -0.65025 -0.00038774 -0.25529 -0.00015223 -0.90554 -0.00053997 596.2949249961064 34.327 0.4817 34.327 34.175 34.656 0 80 24 4 0 0 0 0.0057332 2 18034 18034;18141 96.367 58.191 1 26130000 35919 10257 23901 24366 42310;42311 42310 1665 -0.012271332340333174 LPRGMQPTEF 10 Oxidation (M) _LPRGM(Oxidation (M))QPTEF_ LPRGM(1)QPTEF LPRGM(64)QPTEF 0 0 1 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2952270507812 2 596.294973 1190.57539 -0.19372 -0.00011551 -0.57694 -0.00034403 -0.77066 -0.00045954 596.2947593995976 34.516 0.43423 34.325 34.13 34.564 -0.19131 63 19 4 0 0 0 0.038363 2 17981 17981;18083 63.961 36.332 1 23505000 35920 10257 23901 24366 42312;42313 42312 1665 -0.012271332340333174 LPRGMQPTEF 10 Oxidation (M) _LPRGM(Oxidation (M))QPTEF_ LPRGM(1)QPTEF LPRGM(89)QPTEF 0 0 1 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2957763671875 2 596.294973 1190.57539 0.046106 2.7493E-05 1.513 0.00090222 1.5591 0.00092971 596.2959700808373 38.731 0.68285 34.28 33.992 34.675 -4.4509 121 43 3 0 0 0 0.0090596 2 23131 22993;23131 89.401 56.615 1 68053000 35921 10257 23901 24366 42314;42315 42315 1665 -0.012271332340333174 LPRGMQPTEF 10 Unmodified _LPRGMQPTEF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.29833984375 2 588.297516 1174.58048 0.62871 0.00036987 -0.62777 -0.00036931 0.00094071 5.5342E-07 588.2974307140216 47.092 0.29138 46.755 46.604 46.895 -0.33664 48 14 5 0 0 0 0.025861 1 25201 25201 70.332 39.695 1 11987000 35922 10257 23901 24367 42316 42316 0.00017170628598250914 LPRGMQPTEF 10 Unmodified _LPRGMQPTEF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2994995117188 2 588.297516 1174.58048 0.85645 0.00050385 0.37702 0.0002218 1.2335 0.00072565 588.2974515385581 52.664 0.42892 46.929 46.691 47.12 -5.7345 60 23 3 0 0 0 2.255E-05 2 33151 33151;33273 125.53 65.455 1 242400000 35923 10257 23901 24367 42317;42318 42317 0.00017170628598250914 LPRGMQPTEFF 11 Unmodified _LPRGMQPTEFF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MSMS AL20221201_MKP_PDAC_01 4 661.8334350585938 2 661.831723 1321.64889 NaN NaN NaN NaN NaN NaN NaN 81.488 1 75.313 74.813 75.813 -6.1757 0 0 0 0.0077602 1 53490 53490 65.474 40.483 1 35924 10257 23902 24368 42319 42319 0.0009341520844827755 LPRGMQPTEFF 11 Unmodified _LPRGMQPTEFF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MSMS AL20221201_MKP_PDAC_01 4 661.832763671875 2 661.831723 1321.64889 NaN NaN NaN NaN NaN NaN NaN 81.69 1 75.514 75.014 76.014 -6.1757 0 0 0 0.035798 1 53634 53634 63.227 32.591 1 35925 10257 23902 24368 42320 42320 0.0009341520844827755 LPRGMQPTEFF 11 Unmodified _LPRGMQPTEFF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MSMS AL20221201_MKP_PDAC_01 4 661.8311767578125 2 661.831723 1321.64889 NaN NaN NaN NaN NaN NaN NaN 81.875 1 75.7 75.2 76.2 -6.1757 0 0 0 0.048645 1 53762 53762 51.415 27.395 1 35926 10257 23902 24368 42321 42321 0.0009341520844827755 LPRGMQPTEFF 11 Unmodified _LPRGMQPTEFF_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MSMS AL20221201_MKP_PDAC_01 4 661.831787109375 2 661.831723 1321.64889 NaN NaN NaN NaN NaN NaN NaN 82.066 1 75.89 75.39 76.39 -6.1757 0 0 0 0.15457 1 53894 53894 43.982 16.353 1 35927 10257 23902 24368 42322 42322 0.0009341520844827755 LPRGPLASLL 10 Unmodified _LPRGPLASLL_ 0 0 0 nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3 nc|ENSG00000062038|P22223-2|CDH3 nc|ENSG00000062038|P22223-2|CDH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.83056640625 2 518.829309 1035.64407 0.15468 8.0251E-05 1.1766 0.00061045 1.3313 0.00069071 518.8299003985178 76.784 0.42171 76.834 76.635 77.057 0.05011 38 17 3 0 0 0 0.20195 1 42364 42364 33.445 2.8084 1 2998000 35928 846 23903 24369 42323 42323 0.12766899127996112 LPRGPLASLL 10 Unmodified _LPRGPLASLL_ 0 0 0 nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3 nc|ENSG00000062038|P22223-2|CDH3 nc|ENSG00000062038|P22223-2|CDH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8292236328125 2 518.829309 1035.64407 1.2252 0.00063569 0.12176 6.3173E-05 1.347 0.00069886 518.8292179751417 96.993 0.35327 90.817 90.638 90.992 -6.1757 29 20 2 0 0 0 0.17714 1 64208 64208 36.506 5.8697 1 25444000 35929 846 23903 24369 42324 42324 0.12766899127996112 LPRGRTFTL 9 Unmodified _LPRGRTFTL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.214111328125 3 354.213581 1059.61891 0.10577 3.7465E-05 -0.1667 -5.9048E-05 -0.060932 -2.1583E-05 354.2135177196823 38.933 0.56568 38.944 38.757 39.323 0.011452 77 26 4 0 0 0 0.078314 2 20663 20663;20762 29.437 6.7791 1 77071000 35930 3686 23904 24370 42325;42326 42325 0.09148844325432037 LPRGRTFTL 9 Unmodified _LPRGRTFTL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8173217773438 2 530.816733 1059.61891 0.22143 0.00011754 -0.44157 -0.00023439 -0.22013 -0.00011685 530.8164021341214 38.926 0.30539 38.938 38.801 39.106 0.011452 35 14 3 0 0 0 0.23158 1 20685 20685 20.454 4.6064 1 11745000 35931 3686 23904 24370 42327 42327 0.09148844325432037 LPRGRTFTL 9 Unmodified _LPRGRTFTL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2143249511719 3 354.213581 1059.61891 1.4341 0.00050797 0.17737 6.2828E-05 1.6114 0.0005708 354.2136159752309 43.042 0.45275 38.277 38.009 38.462 -4.7648 101 29 4 0 0 0 0.21643 3 25939 25939;26078;26220 15.739 2.866 1 293980000 35932 3686 23904 24370 42328;42329;42330 42328 0.09148844325432037 LPRGRTFTL 9 Unmodified _LPRGRTFTL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8173217773438 2 530.816733 1059.61891 0.72318 0.00038388 -0.21326 -0.0001132 0.50992 0.00027068 530.8165475891044 43.036 0.42416 38.271 38.009 38.433 -4.7648 73 27 4 0 0 0 0.036857 2 25981 25981;26114 51.63 17.228 1 80224000 35933 3686 23904 24370 42331;42332 42331 0.09148844325432037 LPRGSAQNVM 10 Oxidation (M) _LPRGSAQNVM(Oxidation (M))_ LPRGSAQNVM(1) LPRGSAQNVM(40) 0 0 1 nc|ENSG00000183486|P20592-2|MX2 nc|ENSG00000183486|P20592-2|MX2 nc|ENSG00000183486|P20592-2|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.781005859375 2 544.77949 1087.54443 0.87528 0.00047683 -0.45353 -0.00024707 0.42175 0.00022976 544.7791868268035 19.351 0.19964 16.694 16.624 16.824 -2.6564 21 17 2 0 0 0 0.14688 1 10230 10230 40.239 11.752 1 5864000 35934 16447 23905 24371 42333 42333 1820 0.00415713451729971 LPRGSIPRSL 10 Unmodified _LPRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.335205078125 2 548.33529 1094.65603 -0.18412 -0.00010096 -0.042561 -2.3338E-05 -0.22668 -0.0001243 548.3351427138849 36.26 0.18808 36.285 36.187 36.375 0.024967 12 7 2 0 0 0 0.32493 1 19227 19227 26.021 3.3626 1 1899800 35935 1177 23906 24372 42334 42334 0.11248515871170639 LPRGSIPRSL 10 Unmodified _LPRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8931579589844 3 365.892619 1094.65603 1.885 0.00068969 -0.29025 -0.0001062 1.5947 0.00058349 365.89249531115615 40.86 0.46505 36.253 36.019 36.484 -4.6079 84 28 4 0 0 0 0.16005 2 24367 24367;24493 46.475 19.387 1 108970000 35936 1177 23906 24372 42335;42336 42335 0.11248515871170639 LPRGSIPRSL 10 Unmodified _LPRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3352661132812 2 548.33529 1094.65603 1.2022 0.00065918 -0.093933 -5.1507E-05 1.1082 0.00060768 548.3355423796947 40.847 0.26748 36.302 36.196 36.464 -4.5453 39 16 3 0 0 0 0.078417 1 24430 24430 51.488 24.265 1 18928000 35937 1177 23906 24372 42337 42337 0.11248515871170639 LPRGSIPRSL 10 Unmodified _LPRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 365.892619 1094.65603 -0.25951 -9.4953E-05 0.18367 6.7204E-05 -0.075837 -2.7748E-05 365.89266896608353 36.288 0.3129 36.313 36.144 36.457 0.024971 0.030379 0.00032985 NaN 46.475 43 13 4 NaN NaN NaN NaN 0 NaN NaN 0 37325000 35938 1177 23906 24372 0.11248515871170639 LPRGSRAHITL 11 Unmodified _LPRGSRAHITL_ 0 0 0 ENST00000486438.1_1_17:40123824-40125939:+|nuORF;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP ENST00000486438.1_1_17:40123824-40125939:+|nuORF ENST00000486438.1_1_17:40123824-40125939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5789489746094 3 407.578923 1219.71494 -0.0020226 -8.2435E-07 0.26638 0.00010857 0.26436 0.00010775 407.5790389660537 26.529 0.32105 26.556 26.36 26.681 0.026953 41 13 4 0 0 0 0.21145 2 13802 13700;13802 31.462 15.923 1 74705000 35939 14185 23907 24373 42338;42339 42339 0.11386992165512311 LPRGSRAHITL 11 Unmodified _LPRGSRAHITL_ 0 0 0 ENST00000486438.1_1_17:40123824-40125939:+|nuORF;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP ENST00000486438.1_1_17:40123824-40125939:+|nuORF ENST00000486438.1_1_17:40123824-40125939:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5790710449219 3 407.578923 1219.71494 0.70892 0.00028894 0.049619 2.0224E-05 0.75854 0.00030917 407.57891131283975 30.035 0.54844 26.538 26.328 26.877 -3.497 73 26 4 0 0 0 0.14513 2 16859 16859;16968 37.251 21.712 1 241110000 35940 14185 23907 24373 42340;42341 42340 0.11386992165512311 LPRGSSPSVL 10 Unmodified _LPRGSSPSVL_ 0 0 0 ENSG00000118707|ENST00000373872|TGIF2 ENSG00000118707|ENST00000373872|TGIF2 ENSG00000118707|ENST00000373872|TGIF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7932739257812 2 506.792924 1011.57129 1.1063 0.00056064 -3.0454 -0.0015434 -1.9391 -0.00098273 506.79130581396635 40.958 0.70953 36.35 35.874 36.583 -4.6079 121 43 4 0 0 0 0.20962 1 24634 24634 32.786 2.5609 1 147200000 35941 3389 23908 24374 42342 42342 0.06597145334569632 LPRGWEEGF 9 Unmodified _LPRGWEEGF_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7697143554688 2 545.769448 1089.52434 -0.1438 -7.8481E-05 1.3147 0.00071755 1.1709 0.00063906 545.770313727268 54.445 0.19011 53.979 53.934 54.124 -0.46664 15 9 2 0 0 0 0.078314 1 29540 29540 38.176 16.429 1 2245300 35942 7520 23909 24375 42343 42343 -0.01683714216574117 LPRHHPLVL 9 Unmodified _LPRHHPLVL_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2263488769531 3 361.225821 1080.65563 0.080904 2.9225E-05 1.2149 0.00043884 1.2958 0.00046807 361.22657088667074 28.416 0.21158 28.446 28.308 28.52 0.029564 21 8 4 0 0 0 0.18144 1 14784 14784 24.991 4.5764 1 6117600 35943 929 23910 24376 42344 42344 0.118531409419802 LPRHHPLVL 9 Unmodified _LPRHHPLVL_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2263793945312 3 361.225821 1080.65563 1.73 0.00062494 -0.016276 -5.8793E-06 1.7138 0.00061906 361.22582265931567 32.241 0.29775 28.385 28.268 28.565 -3.8562 24 17 2 0 0 0 0.13231 1 18410 18410 29.841 4.8496 1 9798400 35944 929 23910 24376 42345 42345 0.118531409419802 LPRHLAGF 8 Unmodified _LPRHLAGF_ 0 0 0 ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7667541503906 2 455.766512 909.518471 0.33398 0.00015222 0.68874 0.0003139 1.0227 0.00046612 455.76679165685096 71.929 0.31848 71.929 71.756 72.074 0 25 14 3 0 0 0 0.80975 1 40044 40044 0.79363 0 1 1407200 35945 12490 23911 24377 42346 42346 0.060092320624335116 LPRHLAGF 8 Unmodified _LPRHLAGF_ 0 0 0 ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7670593261719 2 455.766512 909.518471 0.89795 0.00040925 1.0697 0.00048755 1.9677 0.0008968 455.76654381911004 73.348 0.29088 73.348 73.195 73.485 0 27 16 3 0 0 0 0.80975 1 40817 40817 0.79363 0 1 1379100 35946 12490 23911 24377 42347 42347 0.060092320624335116 LPRHLAGF 8 Unmodified _LPRHLAGF_ 0 0 0 ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF ENST00000376350.7_2_19:55693387-55697260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.767578125 2 455.766512 909.518471 0.48879 0.00022278 1.1709 0.00053366 1.6597 0.00075644 455.76705483613915 72.279 0.32008 71.803 71.66 71.98 -0.47609 22 14 2 0 0 0 0.80975 1 39562 39562 0.79363 0 1 1511000 35947 12490 23911 24377 42348 42348 0.060092320624335116 LPRHLEIIY 9 Unmodified _LPRHLEIIY_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5634765625 3 385.229119 1152.66553 -0.14427 -5.5578E-05 1.0888 0.00041943 0.94451 0.00036385 385.2300939500681 51.388 0.85406 50.974 50.376 51.23 -0.41351 68 43 3 0 0 0 0.21589 2 27668 27668;27779 21.59 12.614 1 17017000 35948 1900 23912 24378 42349;42350 42349 0.09530284156721791 LPRHLEIIY 9 Unmodified _LPRHLEIIY_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3402099609375 2 577.340041 1152.66553 -0.087661 -5.061E-05 -0.43617 -0.00025182 -0.52383 -0.00030243 577.339910528325 51.381 0.5163 50.967 50.619 51.135 -0.41351 44 26 3 0 0 0 0.073961 1 27669 27669 41.956 23.809 1 12032000 35949 1900 23912 24378 42351 42351 0.09530284156721791 LPRHLEIIY 9 Unmodified _LPRHLEIIY_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2290344238281 3 385.229119 1152.66553 0.08655 3.3342E-05 1.1154 0.0004297 1.202 0.00046304 385.2297865206863 51.07 0.44349 51.016 50.823 51.266 -0.053875 50 21 4 0 0 0 0.46162 1 27666 27666 9.544 3.7605 1 9567200 35950 1900 23912 24378 42352 42352 0.09530284156721791 LPRHLEIIY 9 Unmodified _LPRHLEIIY_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2294311523438 3 385.229119 1152.66553 1.4052 0.00054131 -0.40542 -0.00015618 0.99975 0.00038513 385.2289772208906 81.097 0.75285 74.922 74.66 75.413 -6.1757 75 42 2 0 0 0 0.37578 3 53079 53079;53208;53473 13.615 8.6831 1 27277000 35951 1900 23912 24378 42353;42354;42355 42353 0.09530284156721791 LPRHLEIIY 9 Unmodified _LPRHLEIIY_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000528757.2_1_14:51382052-51382644:-|nuORF ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.33837890625 2 577.340041 1152.66553 1.0071 0.00058141 1.4337 0.00082772 2.4407 0.0014091 577.3409428624817 81.176 0.62289 75.001 74.624 75.247 -6.1757 65 35 2 0 0 0 0.047194 2 53113 53113;53245 49.554 24.155 1 23389000 35952 1900 23912 24378 42356;42357 42356 0.09530284156721791 LPRHLWYL 8 Unmodified _LPRHLWYL_ 0 0 0 ENSG00000122133|ENST00000479141|PAEP;nc|ENSG00000122133|P09466-2|PAEP;nc|ENSG00000122133|P09466-3|PAEP ENSG00000122133|ENST00000479141|PAEP ENSG00000122133|ENST00000479141|PAEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5472412109375 3 366.546671 1096.61818 1.1086 0.00040634 -1.0048 -0.0003683 0.10379 3.8044E-05 366.5462632238436 41.252 0.33885 36.644 36.449 36.788 -4.6079 47 20 3 0 0 0 0.65867 1 24753 24753 21.747 2.1207 1 20880000 35953 3624 23913 24379 42358 42358 0.07374049676354844 LPRHPHLVL 9 Unmodified _LPRHPHLVL_ 0 0 0 ENST00000583268.1_1_17:38412646-38433335:+|nuORF;ENST00000585043.5_1_17:38375734-38416808:+|nuORF ENST00000583268.1_1_17:38412646-38433335:+|nuORF ENST00000583268.1_1_17:38412646-38433335:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.226318359375 3 361.225821 1080.65563 -0.010507 -3.7956E-06 -0.061794 -2.2321E-05 -0.072301 -2.6117E-05 361.2252916337829 34.767 0.80976 34.795 34.163 34.973 0.027401 48 37 2 0 0 0 0.43515 1 18315 18315 10.8 0 1 4715900 35954 15582 23914 24380 42359 42359 0.118531409419802 LPRHPPPL 8 Unmodified _LPRHPPPL_ 0 0 0 REV__ENSG00000132669|ENST00000255006|RIN2 REV__ENSG00000132669|ENST00000255006|RIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7822265625 2 463.782162 925.549771 -0.17178 -7.9667E-05 -0.061161 -2.8365E-05 -0.23294 -0.00010803 463.7821108297131 78.648 0.31125 78.162 78.012 78.323 -0.48595 21 11 2 0 0 0 0.80044 1 43096 43096 6.3541 0 1 419790 + 35955 19870 23915 24381 42360 42360 0.08401805096514181 LPRHRVVALP 10 Unmodified _LPRHRVVALP_ 0 0 0 ENST00000542475.2_2_17:6555101-6555152:+|nuORF ENST00000542475.2_2_17:6555101-6555152:+|nuORF ENST00000542475.2_2_17:6555101-6555152:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5804748535156 3 386.580375 1156.7193 0.0079149 3.0598E-06 0.53077 0.00020519 0.53869 0.00020825 386.5806357331347 29.068 0.28606 29.098 28.988 29.274 0.030106 19 11 2 0 0 0 0.64183 1 15173 15173 8.9762 4.2603 1 2012000 35956 15062 23916 24382 42361 42361 0.1472050137908809 LPRIAVHEPSF 11 Unmodified _LPRIAVHEPSF_ 0 0 0 nc|ENSG00000109689|Q9P246-2|STIM2;nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5718383789062 3 422.571545 1264.69281 0.42216 0.00017839 0.74494 0.00031479 1.1671 0.00049319 422.57185949291215 52.158 0.31442 52.099 51.875 52.189 -0.058918 24 14 2 0 0 0 0.62338 1 28252 28252 8.2864 5.4431 1 1704100 35957 16113 23917 24383 42362 42362 0.07104767697069292 LPRIKTYFA 9 Unmodified _LPRIKTYFA_ 0 0 0 ENST00000454171.1_1_7:84658221-84658887:+|nuORF ENST00000454171.1_1_7:84658221-84658887:+|nuORF ENST00000454171.1_1_7:84658221-84658887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2225952148438 3 370.221965 1107.64407 0.15293 5.6618E-05 0.7956 0.00029455 0.94853 0.00035117 370.2222677474414 42.302 0.21355 42.293 42.187 42.4 -0.0088196 17 9 2 0 0 0 0.15882 1 22621 22621 27.223 15.048 1 8968500 35958 13566 23918 24384 42363 42363 0.09454899127990757 LPRIQSTAL 9 Unmodified _LPRIQSTAL_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.8030395507812 2 499.803291 997.59203 0.38363 0.00019174 -1.3741 -0.0006868 -0.99051 -0.00049506 499.8022760027156 46.524 0.42836 46.187 45.939 46.367 -0.33664 32 21 2 0 0 0 0.040683 1 24855 24855 49.554 9.6046 1 4524500 35959 10934 23919 24385 42364 42364 0.09313735714226823 LPRIQSTAL 9 Unmodified _LPRIQSTAL_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8028259277344 2 499.803291 997.59203 0.77999 0.00038984 -0.39762 -0.00019873 0.38237 0.00019111 499.80313076412733 46.232 0.42208 46.199 45.968 46.39 -0.033421 40 19 3 0 0 0 0.025842 2 24901 24801;24901 57.722 15.882 1 6447300 35960 10934 23919 24385 42365;42366 42366 0.09313735714226823 LPRIQSTAL 9 Unmodified _LPRIQSTAL_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8028564453125 2 499.803291 997.59203 0.65296 0.00032635 -0.61805 -0.0003089 0.034916 1.7451E-05 499.80288612200127 52.136 0.41812 46.402 46.18 46.598 -5.7345 39 27 2 0 0 0 0.032796 1 32851 32851 53.833 6.0841 1 43245000 35961 10934 23919 24385 42367 42367 0.09313735714226823 LPRISPEEY 9 Unmodified _LPRISPEEY_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2890625 2 552.290214 1102.56587 0.72074 0.00039806 0.93983 0.00051906 1.6606 0.00091712 552.2910348435684 45.837 0.48143 45.837 45.704 46.186 0 30 23 2 0 0 0 0.044011 2 25038 24980;25038 47.749 26.002 1 6483900 35962 2180 23920 24386 42368;42369 42369 0.018694217520987877 LPRIYTYF 8 Unmodified _LPRIYTYF_ 0 0 0 REV__ENST00000497714.1_1_10:98825376-98861127:-|nuORF REV__ENST00000497714.1_1_10:98825376-98861127:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.3507690429688 2 536.794935 1071.57532 1.4533 0.00078013 3.2757 0.0017584 4.729 0.0025385 536.7969999525412 100.81 0.08638 94.637 94.584 94.67 -6.1757 9 5 2 0 0 0 8.7369 1 67490 67490 28.173 10.038 1 27669000 + 35963 27980 23921 24387 42370 42370 0.04239234828264671 LPRKAGVFSDL 11 Unmodified _LPRKAGVFSDL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5676879882812 3 401.567912 1201.68191 -0.14074 -5.6516E-05 0.19602 7.8713E-05 0.055277 2.2197E-05 401.56794965099846 45.387 0.21367 45.359 45.226 45.439 -0.028011 15 10 2 0 0 0 0.038431 1 24359 24359 43.477 11.841 1 18645000 35964 263 23922 24388 42371 42371 0.0891336532281457 LPRKAGVFSDL 11 Unmodified _LPRKAGVFSDL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.8477783203125 2 601.84823 1201.68191 0.49408 0.00029736 -0.20807 -0.00012523 0.286 0.00017213 601.8480272476704 50.199 0.29058 44.66 44.581 44.872 -5.5391 34 18 2 0 0 0 0.029988 1 31449 31449 55.235 28.967 1 13741000 35965 263 23922 24388 42372 42372 0.0891336532281457 LPRKAGVFSDL 11 Unmodified _LPRKAGVFSDL_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5689697265625 3 401.567912 1201.68191 1.2496 0.00050178 0.033769 1.3561E-05 1.2833 0.00051534 401.56794880307217 50.253 0.39848 44.714 44.531 44.929 -5.5391 66 25 3 0 0 0 0.26767 1 31545 31545 23.016 0.24069 1 38025000 35966 263 23922 24388 42373 42373 0.0891336532281457 LPRKAITHL 9 Unmodified _LPRKAITHL_ 0 0 0 nc|ENSG00000288649|Q5JWF8|ACTL10 nc|ENSG00000288649|Q5JWF8|ACTL10 nc|ENSG00000288649|Q5JWF8|ACTL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2261047363281 3 350.225709 1047.6553 0.61308 0.00021472 0.8443 0.0002957 1.4574 0.00051041 350.22604738202216 25.438 0.33817 22.555 22.355 22.693 -2.8831 58 18 4 0 0 0 0.13639 2 13967 13862;13967 29.437 15.032 1 15845000 35967 16626 23923 24389 42374;42375 42375 0.1333772122211485 LPRKAITHL 9 Unmodified _LPRKAITHL_ 0 0 0 nc|ENSG00000288649|Q5JWF8|ACTL10 nc|ENSG00000288649|Q5JWF8|ACTL10 nc|ENSG00000288649|Q5JWF8|ACTL10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 350.225709 1047.6553 0.032613 1.1422E-05 0.84373 0.0002955 0.87634 0.00030692 350.56022782435883 22.202 0.21547 22.216 22.063 22.278 0.013796 -0.16974 -3.2341E-07 NaN 29.437 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1054500 35968 16626 23923 24389 0.1333772122211485 LPRKHIQGL 9 Unmodified _LPRKHIQGL_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3330078125 2 531.33255 1060.65055 0.81934 0.00043534 0.28727 0.00015264 1.1066 0.00058798 531.3326910074497 22.131 0.21511 19.396 19.256 19.471 -2.7348 20 11 2 0 0 0 0.19127 1 11840 11840 24.021 12.38 1 1884400 35969 5519 23924 24390 42376 42376 0.12264837079374047 LPRKHIQGL 9 Unmodified _LPRKHIQGL_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5581970214844 3 354.557459 1060.65055 1.5288 0.00054205 0.68425 0.00024261 2.2131 0.00078466 354.5576681907538 22.111 0.34682 19.376 19.175 19.522 -2.7348 66 19 5 0 0 0 0.30562 1 11848 11848 21.537 9.2963 1 26451000 35970 5519 23924 24390 42377 42377 0.12264837079374047 LPRKHIQGL 9 Unmodified _LPRKHIQGL_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 354.557459 1060.65055 -0.0066117 -2.3442E-06 0.8738 0.00030981 0.86719 0.00030747 354.5578480438734 19.455 0.1688 19.463 19.36 19.529 0.0078506 0.043278 0.00013101 NaN 21.537 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3555100 35971 5519 23924 24390 0.12264837079374047 LPRKKISNF 9 Unmodified _LPRKKISNF_ 0 0 0 ENSG00000134152|ENST00000256544|KATNBL1;ENST00000560671.5_1_15:34440831-34455877:-|nuORF ENSG00000134152|ENST00000256544|KATNBL1 ENSG00000134152|ENST00000256544|KATNBL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.2137145996094 3 368.229231 1101.66586 1.7303 0.00063714 -0.57579 -0.00021202 1.1545 0.00042512 368.56350359054983 21.736 0.22148 19.001 18.9 19.122 -2.7348 18 11 2 0 0 0 0.19758 1 11639 11639 8.7454 3.0136 1 1099500 35972 4562 23925 24391 42378 42378 0.11909703876540334 LPRKQGSILY 10 Unmodified _LPRKQGSILY_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2372131347656 3 392.236274 1173.68699 -0.2644 -0.00010371 0.75092 0.00029454 0.48652 0.00019083 392.23658050057446 30.943 0.2787 30.973 30.83 31.109 0.030104 22 11 3 0 0 0 0.65471 1 16181 16181 7.9454 2.5427 1 1404400 35973 8474 23926 24392 42379 42379 0.10709669185416715 LPRKQGSILY 10 Unmodified _LPRKQGSILY_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2361755371094 3 392.236274 1173.68699 1.0898 0.00042746 -0.72122 -0.00028289 0.36858 0.00014457 392.2358308208192 34.588 0.24739 30.493 30.384 30.632 -4.0951 24 14 2 0 0 0 0.43662 1 19966 19966 19.626 3.0601 1 7663000 35974 8474 23926 24392 42380 42380 0.10709669185416715 LPRLFWSF 8 Unmodified _LPRLFWSF_ 0 0 0 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 REV__nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2977294921875 2 533.297645 1064.58074 0.66099 0.00035251 -0.99939 -0.00053297 -0.3384 -0.00018047 533.2969812431093 32.673 0.33928 28.817 28.635 28.974 -3.8562 30 17 2 0 0 0 0.61462 1 18620 18620 24.674 24.674 1 11358000 + 35975 22223 23927 24393 42381 42381 0.05102958410748215 LPRLGRLRVST 11 Unmodified _LPRLGRLRVST_ 0 0 0 REV__nc|ENSG00000114270|Q02388-2|COL7A1 REV__nc|ENSG00000114270|Q02388-2|COL7A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2721252441406 3 423.270089 1266.78844 NaN NaN NaN NaN NaN NaN NaN 51.248 1 51.194 50.694 51.694 -0.053871 0 0 0 0.8958 1 27729 27729 7.4771 3.2876 1 + 35976 18909 23928 24394 42382 42382 0.16571540607969837 LPRLHGHFEQY 11 Unmodified _LPRLHGHFEQY_ 0 0 0 nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF nc|ENSG00000167202|Q9UPU7-2|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2433776855469 3 466.242199 1395.70477 -0.016255 -7.5788E-06 1.1608 0.00054122 1.1446 0.00053364 466.24265756567985 33.085 0.29601 33.114 32.957 33.253 0.029743 25 12 3 0 0 0 0.66428 1 17389 17389 6.2344 0 1 1835200 35977 7585 23929 24395 42383 42383 0.022743844402839386 LPRLIISNF 9 Unmodified _LPRLIISNF_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7716064453125 2 536.829309 1071.64407 1.2608 0.00067683 -0.63929 -0.00034319 0.62151 0.00033364 536.8292959682962 95.799 0.4797 89.623 89.481 89.96 -6.1757 39 29 2 0 0 0 0.055398 1 63653 63653 52.268 16.141 1 17729000 35978 10906 23930 24396 42384 42384 0.11110899127993434 LPRLLLFLH 9 Unmodified _LPRLLLFLH_ 0 0 0 REV__ENST00000251127.10_1_13:101795458-101795524:-|nuORF REV__ENST00000251127.10_1_13:101795458-101795524:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5786437988281 3 374.577972 1120.71209 0.71615 0.00026826 1.4577 0.00054602 2.1738 0.00081428 374.5784550983222 42.588 0.46427 42.588 42.445 42.909 0 55 23 4 0 0 0 0.61801 1 23037 23037 0.26902 0 1 6373300 + 35979 24883 23931 24397 42385 42385 0.15655768778628953 LPRLPEEWS 9 Unmodified _LPRLPEEWS_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7495727539062 2 563.798206 1125.58186 0.49379 0.0002784 -0.16247 -9.16E-05 0.33132 0.0001868 563.7973858769412 59.534 0.35776 59.043 58.876 59.234 -0.49079 27 16 2 0 0 0 0.19891 1 32369 32369 11.64 0 1 1848500 35980 2406 23932 24398 42386 42386 0.024091279889717043 LPRLPHDSAQL 11 Unmodified _LPRLPHDSAQL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028567-155028726:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.23486328125 3 416.234933 1245.68297 -0.30225 -0.00012581 0.059974 2.4963E-05 -0.24227 -0.00010084 416.2350468454298 41.769 0.26362 41.462 41.355 41.619 -0.30682 24 12 3 0 0 0 0.37147 1 22159 22159 23.016 7.4772 1 7659100 35981 9 23933 24399 42387 42387 0.0699557969169291 LPRLPHDSAQL 11 Unmodified _LPRLPHDSAQL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;ENST00000470779.1_1_1:155028567-155028726:+|nuORF ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MSMS AL20221201_MKP_PDAC_01 4 416.2351379394531 3 416.234933 1245.68297 NaN NaN NaN NaN NaN NaN NaN 46.68 1 41.599 41.099 42.099 -5.0805 0 0 0 0.61063 1 28882 28882 20.411 6.2402 1 35982 9 23933 24399 42388 42388 0.0699557969169291 LPRLPVPAV 9 Unmodified _LPRLPVPAV_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.3136901855469 2 481.313295 960.612037 0.60487 0.00029113 0.37177 0.00017894 0.97664 0.00047007 481.3133746332897 69.115 0.46803 69.146 68.846 69.314 0.030914 44 22 3 0 0 0 0.070838 2 37914 37914;38024 39.957 21.822 1 4297000 35983 2701 23934 24400 42389;42390 42389 0.130155314448416 LPRLQGEYRSL 11 Unmodified _LPRLQGEYRSL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.5866394042969 3 444.585854 1330.73573 1.1528 0.00051254 0.24907 0.00011073 1.4019 0.00062327 444.58599410972886 47.924 0.30024 42.69 42.534 42.834 -5.2339 22 18 2 0 0 0 0.11866 1 29816 29816 40.317 28.089 1 11985000 35984 9762 23935 24401 42391 42391 0.08359537754517987 LPRLRFYEWR 10 Unmodified _LPRLRFYEWR_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2695007324219 3 479.270089 1434.78844 0.68603 0.00032879 -0.78765 -0.0003775 -0.10162 -4.8703E-05 479.26967617416034 56.894 0.29704 56.826 56.658 56.955 -0.068737 47 14 4 0 0 0 0.69385 1 31018 31018 3.5871 0.95582 1 13619000 + 35985 17984 23936 24402 42392 42392 0.088435406079725 LPRLRVLEL 9 Unmodified _LPRLRVLEL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.244873046875 3 370.244881 1107.71281 0.78249 0.00028971 -0.028396 -1.0514E-05 0.7541 0.0002792 370.24485073900814 64.389 0.47035 64.378 64.135 64.606 -0.010536 71 23 4 0 0 0 0.091924 2 35189 35189;35294 34.932 12.274 1 15922000 35986 4485 23937 24403 42393;42394 42393 0.16326563427696783 LPRLRVLEL 9 Unmodified _LPRLRVLEL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2459716796875 3 370.244881 1107.71281 1.8371 0.00068019 -0.12854 -4.7592E-05 1.7086 0.0006326 370.2448573307269 95.417 0.26326 89.242 89.12 89.383 -6.1757 40 14 4 0 0 0 0.11005 1 63165 63165 32.037 11.457 1 52672000 35987 4485 23937 24403 42395 42395 0.16326563427696783 LPRLRVLEL 9 Unmodified _LPRLRVLEL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8643188476562 2 554.863683 1107.71281 1.3058 0.00072452 -0.079911 -4.4339E-05 1.2259 0.00068018 554.8637750404163 95.408 0.21119 89.232 89.14 89.351 -6.1757 20 11 2 0 0 0 0.13231 1 63177 63177 13.906 0 1 27843000 35988 4485 23937 24403 42396 42396 0.16326563427696783 LPRLSLPTW 9 Unmodified _LPRLSLPTW_ 0 0 0 ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENST00000545247.6_1_11:18505612-18548363:-|nuORF ENST00000545247.6_1_11:18505612-18548363:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5506896972656 3 361.550082 1081.62842 1.2465 0.00045069 -0.3447 -0.00012463 0.90185 0.00032606 361.54984722981806 50.288 0.52879 50.239 49.947 50.475 -0.048824 44 25 2 0 0 0 0.58499 1 27098 27098 2.2828 0 1 1543300 35989 15086 23938 24404 42397 42397 0.09086612610917655 LPRLSSDYK 9 Unmodified _LPRLSSDYK_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7984008789062 2 539.798206 1077.58186 NaN NaN NaN NaN NaN NaN NaN 28.463 1 28.463 27.963 28.963 0 0 0 0 0.47914 1 14703 14703 12.241 1.4167 1 + 35990 23463 23939 24405 42398 42398 0.046171279889904326 LPRLSSDYK 9 Unmodified _LPRLSSDYK_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7974853515625 2 539.798206 1077.58186 0.42371 0.00022872 0.37893 0.00020455 0.80264 0.00043327 539.7982719934798 28.398 0.27563 28.336 28.227 28.502 -0.062159 25 10 3 0 0 0 0.024189 1 14654 14654 47.749 0 1 13985000 + 35991 23463 23939 24405 42399 42399 0.046171279889904326 LPRLSSDYK 9 Unmodified _LPRLSSDYK_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7979125976562 2 539.798206 1077.58186 0.17456 9.4229E-05 0.79678 0.0004301 0.97134 0.00052433 539.7985341186594 28.296 0.14082 28.326 28.236 28.377 0.029564 10 5 2 0 0 0 0.34748 1 14733 14733 15.248 8.5253 1 1073300 + 35992 23463 23939 24405 42400 42400 0.046171279889904326 LPRLSSDYK 9 Unmodified _LPRLSSDYK_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7986450195312 2 539.798206 1077.58186 0.42956 0.00023187 0.5131 0.00027697 0.94265 0.00050884 539.7990101310546 32.811 0.26497 28.955 28.796 29.061 -3.8562 31 14 3 0 0 0 0.053952 1 18701 18701 39.95 0 1 16287000 + 35993 23463 23939 24405 42401 42401 0.046171279889904326 LPRLSSFSDA 10 Unmodified _LPRLSSFSDA_ 0 0 0 ENSG00000115526|ENST00000264249|CHST10 ENSG00000115526|ENST00000264249|CHST10 ENSG00000115526|ENST00000264249|CHST10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7874755859375 2 546.787838 1091.56112 -0.39672 -0.00021692 -0.90227 -0.00049335 -1.299 -0.00071027 546.7873183690816 34.432 0.52852 34.241 33.843 34.371 -0.19131 60 21 4 0 0 0 0.19566 1 17935 17935 32.786 4.6125 1 39737000 35994 3133 23940 24406 42402 42402 0.019005376093446102 LPRLSSFSDA 10 Unmodified _LPRLSSFSDA_ 0 0 0 ENSG00000115526|ENST00000264249|CHST10 ENSG00000115526|ENST00000264249|CHST10 ENSG00000115526|ENST00000264249|CHST10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7868041992188 2 546.787838 1091.56112 0.16726 9.1458E-05 -0.9351 -0.0005113 -0.76784 -0.00041984 546.7873614672217 34.15 0.25076 34.178 34.036 34.287 0.028934 26 11 3 0 0 0 0.28721 1 17972 17972 26.268 2.2476 1 3343300 35995 3133 23940 24406 42403 42403 0.019005376093446102 LPRLTPPVL 9 Unmodified _LPRLTPPVL_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3267822265625 2 503.326402 1004.63825 0.39375 0.00019819 -2.1201 -0.0010671 -1.7263 -0.00086889 503.3256903855607 69.602 0.39556 69.633 69.431 69.826 0.030922 49 21 3 0 0 0 0.044011 1 38306 38306 47.749 15.443 1 11263000 35996 6443 23941 24407 42404 42404 0.13611800616320124 LPRMLRRAR 9 Unmodified _LPRMLRRAR_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2457580566406 3 390.245109 1167.7135 NaN NaN NaN NaN NaN NaN NaN 44.802 1 44.78 44.28 45.28 -0.022064 0 0 0 0.84211 1 24048 24048 2.4985 0 1 + 35997 29898 23942 24408 42405 42405 0.1363507959576964 LPRNEADEL 9 Unmodified _LPRNEADEL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7693481445312 2 528.769645 1055.52474 -0.32629 -0.00017253 0.099472 5.2598E-05 -0.22682 -0.00011994 528.7696224092836 30.002 0.34827 30.002 29.833 30.181 0 58 16 5 0 0 0 0.0094802 2 15514 15514;15620 79.596 17.503 1 102130000 35998 1799 23943 24409 42406;42407 42406 -0.0008033928738768736 LPRNEADEL 9 Unmodified _LPRNEADEL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.771240234375 2 528.769645 1055.52474 0.58471 0.00030918 2.1727 0.0011489 2.7575 0.0014581 528.7704838482588 29.987 0.13356 29.907 29.841 29.975 -0.080429 8 4 2 0 0 0 0.43305 1 15575 15575 10.8 0 1 1059000 35999 1799 23943 24409 42408 42408 -0.0008033928738768736 LPRNEADEL 9 Unmodified _LPRNEADEL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.77001953125 2 528.769645 1055.52474 -0.019838 -1.049E-05 1.0082 0.00053311 0.98837 0.00052262 528.7699146466346 29.76 0.17493 29.791 29.693 29.868 0.030104 11 6 2 0 0 0 0.19349 1 15561 15561 24.991 5.734 1 2023000 36000 1799 23943 24409 42409 42409 -0.0008033928738768736 LPRNEADEL 9 Unmodified _LPRNEADEL_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7701416015625 2 528.769645 1055.52474 1.1943 0.00063149 -0.1794 -9.486E-05 1.0149 0.00053663 528.7695421091295 34.13 0.52103 30.145 29.858 30.379 -3.9853 76 28 3 0 0 0 0.0085857 3 19633 19510;19633;19768 89.401 47.561 1 349270000 36001 1799 23943 24409 42410;42411;42412 42411 -0.0008033928738768736 LPRNIAVPY 9 Unmodified _LPRNIAVPY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8065185546875 2 521.805834 1041.59712 0.67622 0.00035285 -0.45512 -0.00023748 0.2211 0.00011537 521.8058796942706 50.662 0.25703 50.608 50.49 50.747 -0.053871 27 12 3 0 0 0 0.06187 1 27398 27398 42.095 25.152 1 3223100 36002 4309 23944 24410 42413 42413 0.0779803957684635 LPRNIAVPY 9 Unmodified _LPRNIAVPY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 521.805834 1041.59712 0.1349 7.0393E-05 2.8054 0.0014639 2.9403 0.0015343 521.8080737729041 51.074 0.27991 50.66 50.518 50.798 -0.41351 0.031232 0.003182 NaN 42.095 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1034000 36003 4309 23944 24410 0.0779803957684635 LPRNIAVPY 9 Unmodified _LPRNIAVPY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521636.1_1_8:39775423-39780236:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 521.805834 1041.59712 0.75007 0.00039139 -0.45325 -0.00023651 0.29682 0.00015488 521.8057295417668 56.596 0.1575 50.619 50.529 50.687 -5.9769 -0.0099751 -0.00021876 NaN 42.095 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 17176000 36004 4309 23944 24410 0.0779803957684635 LPRPAPLF 8 Unmodified _LPRPAPLF_ 0 0 0 REV__ENST00000354386.10_1_14:58955358-58955499:+|nuORF REV__ENST00000354386.10_1_14:58955358-58955499:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7789306640625 2 455.779088 909.543623 0.93191 0.00042475 -0.001877 -8.5552E-07 0.93003 0.00042389 455.77915265746327 93.755 0.35007 87.579 87.382 87.732 -6.1757 48 20 3 0 0 0 0.50586 1 61984 61984 34.187 34.187 1 26908000 + 36005 25793 23945 24411 42414 42414 0.08523286864988222 LPRPCPTEQL 10 Carbamidomethyl (C) _LPRPC(Carbamidomethyl (C))PTEQL_ LPRPC(1)PTEQL LPRPC(69)PTEQL 0 1 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8161010742188 2 605.816073 1209.61759 0.11627 7.0438E-05 -0.18717 -0.00011339 -0.0709 -4.2952E-05 605.8159076542681 45.028 0.22688 40.176 40.053 40.28 -4.852 21 14 2 0 0 0 0.027278 1 27550 27550 69.338 33.294 1 7679500 36006 4239 23946 24412 42415 42415 421 0.021168421743368526 LPRPKAGP 8 Unmodified _LPRPKAGP_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.259521484375 2 418.261062 834.507572 0.66928 0.00027993 -1.9424 -0.00081244 -1.2732 -0.00053251 418.259785892557 46.243 0.30973 46.21 46.059 46.369 -0.033417 32 14 3 0 0 0 0.44122 1 24830 24830 40.449 0 1 15661000 36007 2297 23947 24413 42416 42416 0.08369829688126629 LPRPKAGP 8 Unmodified _LPRPKAGP_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.2613830566406 2 418.261062 834.507572 1.1058 0.00046252 -0.15359 -6.4242E-05 0.95222 0.00039827 418.2609717180879 51.472 0.34074 45.823 45.586 45.927 -5.649 32 20 2 0 0 0 0.28922 2 32287 32287;32413 56.541 0 1 47333000 36008 2297 23947 24413 42417;42418 42417 0.08369829688126629 LPRPMLLVL 9 Unmodified _LPRPMLLVL_ 0 0 0 ENST00000529654.5_1_8:145616841-145618286:+|nuORF;ENSG00000173137|ENST00000308860|ADCK5 ENST00000529654.5_1_8:145616841-145618286:+|nuORF ENST00000529654.5_1_8:145616841-145618286:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 526.34033203125 2 526.338455 1050.66236 NaN NaN NaN NaN NaN NaN NaN 82.2 1 76.024 75.524 76.524 -6.1757 0 0 0 0.7243 1 53987 53987 8.5933 0 1 36009 8289 23948 24414 42419 42419 0.13905317778335302 LPRPPHSPAY 10 Unmodified _LPRPPHSPAY_ 0 0 0 REV__ENSG00000236104|ENST00000431845|ZBTB22 REV__ENSG00000236104|ENST00000431845|ZBTB22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8059692382812 2 567.806365 1133.59818 -0.38359 -0.0002178 1.0448 0.00059323 0.66119 0.00037543 567.8064451925749 48.65 0.47787 48.65 48.351 48.828 0 61 22 3 0 0 0 0.2178 1 26710 26710 32.305 3.2239 1 33728000 + 36010 24423 23949 24415 42420 42420 0.03672253945751436 LPRPVGGVFI 10 Unmodified _LPRPVGGVFI_ 0 0 0 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 REV__nc|ENSG00000107864|Q8NE35-2|CPEB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.82470703125 2 527.824027 1053.6335 0.41787 0.00022056 0.67258 0.000355 1.0904 0.00057556 527.8243210726233 48.017 0.54316 47.978 47.68 48.224 -0.038643 80 26 4 0 0 0 0.42068 1 26002 26002 20.454 0.039092 1 42379000 + 36011 18581 23950 24416 42421 42421 0.10882916473565274 LPRPVPLVA 9 Unmodified _LPRPVPLVA_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.313232421875 2 481.313295 960.612037 0.079901 3.8458E-05 0.56101 0.00027002 0.64091 0.00030848 481.31342088157294 54.287 0.35692 54.22 53.981 54.338 -0.066936 31 17 2 0 0 0 0.070838 2 29507 29410;29507 39.957 9.7325 1 10685000 36012 2696 23951 24417 42422;42423 42423 0.130155314448416 LPRPVPLVA 9 Unmodified _LPRPVPLVA_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.313232421875 2 481.313295 960.612037 1.0678 0.00051394 -0.17135 -8.2473E-05 0.89644 0.00043147 481.31315764462994 60.307 0.37982 54.192 54 54.379 -6.1147 37 19 2 0 0 0 0.031062 2 38883 38753;38883 54.774 3.9185 1 26235000 36013 2696 23951 24417 42424;42425 42425 0.130155314448416 LPRQDTTSI 9 Unmodified _LPRQDTTSI_ 0 0 0 ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1 ENSG00000164414|ENST00000369552|SLC35A1 ENSG00000164414|ENST00000369552|SLC35A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7802124023438 2 515.780013 1029.54547 -0.38754 -0.00019989 0.9115 0.00047014 0.52396 0.00027025 515.7803239099512 26.796 0.27353 26.796 26.636 26.909 0 17 12 3 0 0 0 0.047788 1 13805 13805 45.7 14.431 1 999910 36014 7192 23952 24418 42426 42426 0.03188251092274186 LPRQDVQM 8 Oxidation (M) _LPRQDVQM(Oxidation (M))_ LPRQDVQM(1) LPRQDVQM(85) 0 0 1 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7560119628906 2 501.755484 1001.49641 1.0422 0.00052291 0.49118 0.00024645 1.5333 0.00076936 501.75519518974426 19.263 0.26271 16.607 16.436 16.699 -2.6564 32 18 2 0 0 0 0.15594 1 10145 10145 85.272 47.298 1 9941300 36015 2300 23953 24419 42427 42427 395 -0.0042736046831350905 LPRQDVQM 8 Unmodified _LPRQDVQM_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7564086914062 2 493.758027 985.5015 0.75744 0.00037399 1.6388 0.00080918 2.3963 0.0011832 493.75944723403614 32.624 0.17226 28.768 28.732 28.904 -3.8562 18 8 3 0 0 0 0.36898 2 18661 18633;18661 47.749 15.443 1 27320000 36016 2300 23953 24420 42428;42429 42429 0.00816943394295322 LPRQHLVQL 9 Unmodified _LPRQHLVQL_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5612487792969 3 368.560981 1102.66111 0.20942 7.7182E-05 0.267 9.8406E-05 0.47642 0.00017559 368.5610696705875 39.282 0.34322 39.294 39.084 39.427 0.011452 37 15 3 0 0 0 0.32871 1 20888 20888 15.248 6.8042 1 5577600 36017 5731 23954 24421 42430 42430 0.11388819733770106 LPRQPATSL 9 Unmodified _LPRQPATSL_ 0 0 0 ENST00000278671.9_1_11:71809441-71810244:-|nuORF ENST00000278671.9_1_11:71809441-71810244:-|nuORF ENST00000278671.9_1_11:71809441-71810244:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7879028320312 2 491.787641 981.56073 -0.072287 -3.555E-05 0.83013 0.00040825 0.75784 0.0003727 491.78805827681185 33.006 0.20366 32.846 32.71 32.913 -0.15918 10 7 2 0 0 0 0.10247 1 17216 17216 32.786 3.7041 1 1267000 36018 11400 23955 24422 42431 42431 0.06921162680123416 LPRQPPMSL 9 Oxidation (M) _LPRQPPM(Oxidation (M))SL_ LPRQPPM(1)SL LPRQPPM(50)SL 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.789794921875 2 527.789327 1053.5641 -0.39647 -0.00020925 0.82686 0.00043641 0.4304 0.00022716 527.789839192454 34.93 0.4505 34.728 34.487 34.938 -0.20145 47 19 3 0 0 0 0.040683 2 18237 18237;18340 49.554 26.406 1 8853800 36019 8706 23956 24423 42432;42433 42432 1472 0.03946089462488089 LPRQPPMSL 9 Oxidation (M) _LPRQPPM(Oxidation (M))SL_ LPRQPPM(1)SL LPRQPPM(58)SL 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7894897460938 2 527.789327 1053.5641 0.053104 2.8028E-05 -0.10732 -5.6645E-05 -0.054221 -2.8617E-05 527.7893758497336 34.613 0.37865 34.64 34.5 34.878 0.027401 40 17 3 0 0 0 0.025842 2 18247 18247;18357 57.722 33.701 1 5141700 36020 8706 23956 24423 42434;42435 42434 1472 0.03946089462488089 LPRQPPMSL 9 Oxidation (M) _LPRQPPM(Oxidation (M))SL_ LPRQPPM(1)SL LPRQPPM(64)SL 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7916259765625 2 527.789327 1053.5641 0.84369 0.00044529 1.9641 0.0010366 2.8078 0.0014819 527.7905559642063 39.494 0.44197 35.043 34.825 35.267 -4.4509 83 26 4 0 0 0 0.01958 1 23347 23347 63.961 29.559 1 25430000 36021 8706 23956 24423 42436 42436 1472 0.03946089462488089 LPRQPPMSL 9 Unmodified _LPRQPPMSL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7916870117188 2 519.791869 1037.56919 0.53977 0.00028057 -0.39383 -0.00020471 0.14594 7.5859E-05 519.7914630199161 47.646 0.30858 47.607 47.435 47.743 -0.038643 17 14 2 0 0 0 0.029718 1 25689 25689 55.503 27.874 1 3063400 36022 8706 23956 24424 42437 42437 0.05190393325119658 LPRQPPMSL 9 Unmodified _LPRQPPMSL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.792236328125 2 519.791869 1037.56919 0.77528 0.00040298 0.22656 0.00011776 1.0018 0.00052075 519.7919395980034 53.336 0.41098 47.532 47.334 47.745 -5.8042 68 25 3 0 0 0 0.0082475 2 33799 33626;33799 92.653 50.814 1 130570000 36023 8706 23956 24424 42438;42439 42439 0.05190393325119658 LPRQSQITI 9 Unmodified _LPRQSQITI_ 0 0 0 ENSG00000168386|ENST00000477258|FILIP1L ENSG00000168386|ENST00000477258|FILIP1L ENSG00000168386|ENST00000477258|FILIP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3150024414062 2 528.314023 1054.61349 0.69812 0.00036883 0.3389 0.00017905 1.037 0.00054788 528.314234251771 43.581 0.44591 38.816 38.633 39.079 -4.7648 59 27 3 0 0 0 0.013118 1 26553 26553 69.105 0 1 26875000 36024 7754 23957 24425 42440 42440 0.08837120742941806 LPRREGYEF 9 Unmodified _LPRREGYEF_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5358276367188 3 389.536612 1165.58801 -0.28284 -0.00011018 -0.16304 -6.351E-05 -0.44588 -0.00017369 389.5365072546193 30.971 0.25936 30.971 30.852 31.111 0 35 12 4 0 0 0 0.36964 1 16088 16088 9.544 1.5986 1 7381800 36025 3711 23958 24426 42441 42441 0.011836462205110365 LPRREGYEF 9 Unmodified _LPRREGYEF_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5373840332031 3 389.536612 1165.58801 1.2297 0.00047902 1.1621 0.00045269 2.3918 0.0009317 389.53699749978216 34.276 0.41462 30.29 30.115 30.529 -3.9853 40 23 2 0 0 0 0.14 1 19712 19712 21.59 10.691 1 25184000 36026 3711 23958 24426 42442 42442 0.011836462205110365 LPRREGYEFF 10 Unmodified _LPRREGYEFF_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5592041015625 3 438.559417 1312.65642 0.5071 0.00022239 0.25392 0.00011136 0.76102 0.00033375 438.5594589175513 49.269 0.2905 48.897 48.714 49.005 -0.37172 31 13 3 0 0 0 0.49559 1 26458 26458 16.566 10.374 1 3747700 36027 3711 23959 24427 42443 42443 0.012598908003610632 LPRREPTVSSF 11 Unmodified _LPRREPTVSSF_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.240966796875 3 430.238455 1287.69353 0.95837 0.00041233 1.7031 0.00073273 2.6615 0.0011451 430.239724531022 36.741 0.32853 32.457 32.353 32.682 -4.2835 27 19 2 0 0 0 0.47711 1 21519 21519 17.572 5.9405 1 5746100 36028 9308 23960 24428 42444 42444 0.061195623461117066 LPRREPTVSSF 11 Unmodified _LPRREPTVSSF_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L;ENST00000535343.5_1_12:132632219-132636084:+|nuORF ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 430.238455 1287.69353 -0.23075 -9.9279E-05 0.18211 7.835E-05 -0.048645 -2.0929E-05 430.23843447433944 32.583 0.18312 32.454 32.392 32.576 -0.12915 -0.0018219 -0.00072788 NaN 17.572 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1246300 36029 9308 23960 24428 0.061195623461117066 LPRRETEEF 9 Unmodified _LPRRETEEF_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;KLF4|p.L319Pfs*4|1|0.31|ENSG00000136826|chr9:107487438-107487439|-/G|frameshift_variant;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8717041015625 3 392.871772 1175.59349 -0.38944 -0.000153 -0.078316 -3.0768E-05 -0.46776 -0.00018377 392.87234069330816 23.952 0.32768 23.952 23.791 24.119 0 50 15 5 0 0 0 0.14 1 12189 12189 27.223 8.8501 1 3889200 36030 4862 23961 24429 42445 42445 0.012713250123169928 LPRRETEEF 9 Unmodified _LPRRETEEF_ 0 0 0 ENSG00000136826|ENST00000374672|KLF4;nc|ENSG00000136826|O43474|KLF4;KLF4|p.L319Pfs*4|1|0.31|ENSG00000136826|chr9:107487438-107487439|-/G|frameshift_variant;nc|ENSG00000136826|O43474-4|KLF4;ENST00000497048.5_1_9:110248034-110250560:-|nuORF ENSG00000136826|ENST00000374672|KLF4 ENSG00000136826|ENST00000374672|KLF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.871337890625 3 392.871772 1175.59349 0.79987 0.00031425 0.21484 8.4405E-05 1.0147 0.00039865 392.87202043235516 26.754 0.28463 23.718 23.589 23.873 -3.0365 26 14 2 0 0 0 0.32871 1 14777 14777 15.248 9.465 1 10928000 36031 4862 23961 24429 42446 42446 0.012713250123169928 LPRRGLWLL 9 Unmodified _LPRRGLWLL_ 0 0 0 ENST00000409726.5_1_2:238768318-238783297:+|nuORF;ENSG00000132329|ENST00000254661|RAMP1 ENST00000409726.5_1_2:238768318-238783297:+|nuORF ENST00000409726.5_1_2:238768318-238783297:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.2423400878906 3 375.241471 1122.70258 NaN NaN NaN NaN NaN NaN NaN 96.905 1 90.729 90.229 91.229 -6.1757 0 0 0 0.27852 1 64221 64221 26.268 5.8536 1 36032 4392 23962 24430 42447 42447 0.14614000493133972 LPRRKHLSSL 10 Unmodified _LPRRKHLSSL_ 0 0 0 ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.9193420410156 3 402.919168 1205.73567 -0.21489 -8.6585E-05 -0.097445 -3.9263E-05 -0.31234 -0.00012585 402.9191235114972 35.207 0.33582 35.234 35.061 35.397 0.027401 47 15 4 0 0 0 0.59286 1 18552 18552 11.518 0.61892 1 28164000 36033 12570 23963 24431 42448 42448 0.1410358254518087 LPRRKHLSSL 10 Unmodified _LPRRKHLSSL_ 0 0 0 ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF ENST00000379561.5_1_13:41134633-41239748:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9197692871094 3 402.919168 1205.73567 0.97586 0.00039319 0.27371 0.00011028 1.2496 0.00050348 402.9192851545 39.427 0.41222 34.976 34.782 35.194 -4.4509 43 24 2 0 0 0 0.51153 1 23321 23321 15.739 2.1238 1 18780000 36034 12570 23963 24431 42449 42449 0.1410358254518087 LPRRKYRREWW 11 Unmodified _LPRRKYRREWW_ 0 0 0 REV__ENST00000492991.5_1_9:132595938-132597442:-|nuORF REV__ENST00000492991.5_1_9:132595938-132597442:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.4629516601562 2 823.46295 1644.91135 NaN NaN NaN NaN NaN NaN NaN 70.774 1 70.81 70.31 71.31 0.035515 0 0 0 0.94301 1 38959 38959 0.35063 0.35063 1 + 36035 27913 23964 24432 42450 42450 0.11468797059251301 LPRRLAIQL 9 Unmodified _LPRRLAIQL_ 0 0 0 ENST00000466127.1_1_1:226109155-226109632:-|nuORF;ENSG00000143811|ENST00000343818|PYCR2 ENST00000466127.1_1_1:226109155-226109632:-|nuORF ENST00000466127.1_1_1:226109155-226109632:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5732116699219 3 360.573109 1078.6975 -0.3083 -0.00011117 0.45416 0.00016376 0.14585 5.2591E-05 360.57323190954696 51.422 0.27288 51.368 51.187 51.46 -0.053871 29 13 3 0 0 0 0.2324 1 27820 27820 20.415 0 1 5399300 36036 5555 23965 24433 42451 42451 0.16129696630491708 LPRRLAIQL 9 Unmodified _LPRRLAIQL_ 0 0 0 ENST00000466127.1_1_1:226109155-226109632:-|nuORF;ENSG00000143811|ENST00000343818|PYCR2 ENST00000466127.1_1_1:226109155-226109632:-|nuORF ENST00000466127.1_1_1:226109155-226109632:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5737915039062 3 360.573109 1078.6975 1.776 0.00064038 -0.021381 -7.7095E-06 1.7546 0.00063267 360.5731217548823 81.545 0.66844 75.369 75.044 75.712 -6.1757 52 37 2 0 0 0 0.11784 1 53521 53521 31.268 5.0002 1 11560000 36037 5555 23965 24433 42452 42452 0.16129696630491708 LPRRNSLIL 9 Unmodified _LPRRNSLIL_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENST00000566338.5_1_15:31233675-31240771:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2339782714844 3 361.232864 1080.67676 0.20244 7.3127E-05 1.1667 0.00042147 1.3692 0.00049459 361.2333690589632 51.981 0.5143 51.922 51.553 52.067 -0.058918 54 24 3 0 0 0 0.27545 1 28076 28076 18.373 3.1246 1 7470400 36038 7550 23966 24434 42453 42453 0.139651062508392 LPRRPNDIYV 10 Unmodified _LPRRPNDIYV_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2374572753906 3 414.903295 1241.68806 -0.37904 -0.00015727 -0.047889 -1.9869E-05 -0.42693 -0.00017713 414.90325795681406 36.556 0.3338 36.577 36.393 36.727 0.021545 24 15 2 0 0 0 0.67459 1 19312 19312 5.4027 2.3304 1 5911300 36039 8201 23967 24435 42454 42454 0.07687883554308428 LPRRPNDIYV 10 Unmodified _LPRRPNDIYV_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.90380859375 3 414.903295 1241.68806 0.47988 0.0001991 1.0406 0.00043174 1.5205 0.00063084 414.9037635323303 41.325 0.48466 36.717 36.467 36.952 -4.6079 70 31 3 0 0 0 0.57893 1 24741 24741 10.899 5.0308 1 34639000 36040 8201 23967 24435 42455 42455 0.07687883554308428 LPRRPNDIYV 10 Unmodified _LPRRPNDIYV_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8512573242188 2 621.851304 1241.68806 -0.0019528 -1.2143E-06 -0.30859 -0.0001919 -0.31055 -0.00019311 621.8508747231353 41.331 0.35086 36.723 36.528 36.879 -4.6079 35 22 2 0 0 0 0.06987 2 24759 24759;24899 53.404 36.291 1 19050000 36041 8201 23967 24435 42456;42457 42456 0.07687883554308428 LPRRPNDIYV 10 Unmodified _LPRRPNDIYV_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.851304 1241.68806 -0.34024 -0.00021158 0.49326 0.00030673 0.15302 9.5155E-05 622.3527453458901 36.873 0.087402 36.623 36.579 36.667 -0.2497 -0.049909 0.00066522 NaN 53.404 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1503000 36042 8201 23967 24435 0.07687883554308428 LPRRREFVM 9 Unmodified _LPRRREFVM_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8975524902344 3 401.897487 1202.67063 1.0913 0.0004386 0.33106 0.00013305 1.4224 0.00057165 401.89758976255234 30.902 0.29007 27.405 27.23 27.52 -3.497 20 12 2 0 0 0 0.43463 1 17436 17436 15.248 6.8042 1 64589000 36043 3763 23968 24436 42458 42458 0.07740264747667425 LPRRRPLAAS 10 Unmodified _LPRRRPLAAS_ 0 0 0 ENST00000361729.2_1_1:23857363-23857516:-|nuORF ENST00000361729.2_1_1:23857363-23857516:-|nuORF ENST00000361729.2_1_1:23857363-23857516:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5720825195312 3 379.57188 1135.69381 1.4302 0.00054288 -1.2836 -0.00048723 0.1466 5.5646E-05 379.905699045906 100.5 0.2029 94.329 94.202 94.404 -6.1757 19 12 2 0 0 0 0.71981 1 67186 67186 0.69767 0 1 38930000 36044 12191 23969 24437 42459 42459 0.13139026856629243 LPRRRRQN 8 Unmodified _LPRRRRQN_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL;REV__nc|ENSG00000059145|Q9H9P5-5|UNKL;REV__nc|ENSG00000059145|Q9H9P5|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.835205078125 2 548.333947 1094.65334 1.5107 0.00082839 -1.4836 -0.00081353 0.027097 1.4858E-05 548.8345367898055 104.61 0.13695 98.437 98.36 98.496 -6.1757 9 6 2 0 0 0 0.80992 1 70043 70043 0.69038 0.088878 1 9379100 + 36045 29495;29494;17316 23970 24438 42460 42460 0.10980105256885508 LPRSEEPLY 9 Unmodified _LPRSEEPLY_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2947998046875 2 552.290214 1102.56587 0.72074 0.00039806 0.93983 0.00051906 1.6606 0.00091712 552.2910348435684 45.837 0.48143 45.837 45.704 46.186 0 30 23 2 0 0 0 0.18144 1 24995 24995 24.991 0 1 6483900 36046 10134 23971 24439 42461 42461 0.018694217520987877 LPRSGASIP 9 Unmodified _LPRSGASIP_ 0 0 0 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2604370117188 2 449.261259 896.507966 1.3066 0.00058702 -0.44404 -0.00019949 0.8626 0.00038753 449.2611205053171 37.084 0.48293 32.801 32.524 33.007 -4.2835 95 29 4 0 0 0 0.08691 2 21573 21573;21696 36.127 0.082828 1 111960000 + 36047 20377 23972 24440 42462;42463 42462 0.055572046173210765 LPRSGQALAL 10 Unmodified _LPRSGQALAL_ 0 0 0 ENST00000563058.5_1_15:75653361-75654692:-|nuORF ENST00000563058.5_1_15:75653361-75654692:-|nuORF ENST00000563058.5_1_15:75653361-75654692:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3090209960938 2 513.308741 1024.60293 1.4612 0.00075004 -0.68385 -0.00035103 0.77733 0.00039901 513.3085519266084 46.901 0.36002 46.868 46.656 47.016 -0.033417 38 17 3 0 0 0 0.20962 1 25310 25310 32.786 0 1 7349900 36048 15352 23973 24441 42464 42464 0.0916113808850696 LPRSIGNLTQL 11 Unmodified _LPRSIGNLTQL_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3583374023438 2 606.358962 1210.70337 0.339 0.00020555 -1.1255 -0.00068247 -0.78653 -0.00047692 606.3586244984671 60.408 0.34256 60.365 60.172 60.515 -0.043507 39 16 3 0 0 0 0.0079153 1 32913 32913 74.772 43.503 1 25044000 36049 5924 23974 24442 42465 42465 0.10644750351502807 LPRSLGKLTKL 11 Unmodified _LPRSLGKLTKL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2718811035156 3 409.271207 1224.79179 0.84953 0.00034769 0.27493 0.00011252 1.1245 0.00046021 409.2712876498087 81.959 0.45133 75.784 75.55 76.001 -6.1757 52 25 3 0 0 0 0.0045481 1 53784 53784 58.996 31.908 1 15063000 36050 8930 23975 24443 42466 42466 0.1883879066197096 LPRSPTRSW 9 Unmodified _LPRSPTRSW_ 0 0 0 ENST00000562593.5_1_16:88909039-88909435:-|nuORF ENST00000562593.5_1_16:88909039-88909435:-|nuORF ENST00000562593.5_1_16:88909039-88909435:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3072509765625 2 550.30399 1098.59343 NaN NaN NaN NaN NaN NaN NaN 18.116 1 18.122 17.622 18.622 0.0060463 0 0 0 0.85447 1 9167 9167 0.45834 0 1 36051 15343 23976 24444 42467 42467 0.048073698030066225 LPRSRQLL 8 Unmodified _LPRSRQLL_ 0 0 0 REV__ENSG00000106034|ENST00000310396|CPED1 REV__ENSG00000106034|ENST00000310396|CPED1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.7538757324219 2 491.811451 981.608348 1.0696 0.00052602 -0.22894 -0.00011259 0.84062 0.00041343 491.81128764736485 50.463 0.32605 44.924 44.725 45.051 -5.5391 33 20 2 0 0 0 8.7369 1 31603 31603 7.9102 0 1 21224000 + 36052 18484 23977 24445 42468 42468 0.11680861670993181 LPRSSRGLLLF 11 Unmodified _LPRSSRGLLLF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20221201_MKP_PDAC_01 4 420.2596435546875 3 420.25919 1257.75574 NaN NaN NaN NaN NaN NaN NaN 93.699 1 87.523 87.023 88.023 -6.1757 0 0 0 0.59838 1 62034 62034 20.871 3.4285 1 36053 4239 23978 24446 42469 42469 0.13717333485124072 LPRSTVINI 9 Unmodified _LPRSTVINI_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8107604980469 2 506.811116 1011.60768 0.031665 1.6048E-05 0.20835 0.00010559 0.24001 0.00012164 506.81114269163686 51.524 0.33074 51.47 51.306 51.637 -0.053871 49 16 4 0 0 0 0.094149 1 27866 27866 34.402 8.1336 1 31901000 36054 9424 23979 24447 42470 42470 0.10234022231270501 LPRSTVINI 9 Unmodified _LPRSTVINI_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8114929199219 2 506.811116 1011.60768 0.92189 0.00046722 -0.25547 -0.00012947 0.66642 0.00033775 506.81098059867895 57.438 0.43074 51.41 51.219 51.65 -6.0275 51 22 3 0 0 0 0.047788 1 36745 36745 45.7 5.7499 1 99011000 36055 9424 23979 24447 42471 42471 0.10234022231270501 LPRSVDVIL 9 Unmodified _LPRSVDVIL_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3132934570312 2 506.313492 1010.61243 0.63347 0.00032074 -0.32584 -0.00016498 0.30763 0.00015576 506.31325530681056 67.519 0.64626 61.343 61.091 61.737 -6.1757 59 36 2 0 0 0 0.14 1 43994 43994 29.082 5.061 1 31319000 36056 2860 23980 24448 42472 42472 0.1075490637402936 LPRTAISEL 9 Unmodified _LPRTAISEL_ 0 0 0 nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871999-79873399:-|nuORF;ENST00000572976.5_1_17:79872158-79873644:-|nuORF nc|ENSG00000187531|Q9NRC8-3|SIRT7 nc|ENSG00000187531|Q9NRC8-3|SIRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7974243164062 2 500.295299 998.576045 0.10685 5.3456E-05 0.55064 0.00027548 0.65749 0.00032894 500.2955385227741 48.94 0.32714 48.568 48.407 48.734 -0.37172 30 16 2 0 0 0 0.036857 1 26247 26247 51.63 1.6968 1 10144000 36057 9560 23981 24449 42473 42473 0.07670029477310436 LPRTALLI 8 Unmodified _LPRTALLI_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;nc|ENSG00000186815|Q9ULQ1-2|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000546503.1_1_12:113715083-113718023:+|nuORF ENSG00000186815|ENST00000335509|TPCN1;ENST00000546503.1_1_12:113715083-113718023:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.8008117675781 2 448.80002 895.585488 0.61025 0.00027388 -0.64617 -0.00029 -0.035923 -1.6122E-05 448.7997270730951 75.472 0.39948 75.518 75.326 75.725 0.045967 30 18 2 0 0 0 0.48669 1 41614 41614 36.044 0 1 2008600 36058 9509;15106 23982 24450 42474 42474 0.1335184255351578 LPRTDYSF 8 Unmodified _LPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7512817382812 2 499.750724 997.486896 0.16442 8.217E-05 2.7822 0.0013904 2.9466 0.0014726 499.7506253547378 43.613 0.42102 43.613 43.399 43.82 0 63 20 5 0 0 0 0.25522 1 23616 23616 61.357 15.337 1 138930000 36059 10618 23983 24451 42475 42475 -0.011948054821914411 LPRTDYSF 8 Unmodified _LPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7508239746094 2 499.750724 997.486896 -0.14013 -7.0028E-05 0.39138 0.00019559 0.25125 0.00012556 499.75074386372074 43.808 0.24022 43.497 43.359 43.599 -0.31039 37 11 4 0 0 0 0.078813 2 23277 23277;23375 111.29 62.941 1 256940000 36060 10618 23983 24451 42476;42477 42476 -0.011948054821914411 LPRTDYSF 8 Unmodified _LPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7501220703125 2 499.750724 997.486896 0.43328 0.00021653 -0.79148 -0.00039554 -0.3582 -0.00017901 499.7503759328736 43.453 0.19501 43.437 43.333 43.528 -0.015667 14 8 2 0 0 0 0.22971 1 23290 23290 65.235 20.828 1 12271000 36061 10618 23983 24451 42478 42478 -0.011948054821914411 LPRTDYSF 8 Unmodified _LPRTDYSF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7514953613281 2 499.750724 997.486896 0.88723 0.00044339 -0.028911 -1.4448E-05 0.85831 0.00042894 499.75071902927647 49.237 0.51079 43.841 43.588 44.099 -5.3961 101 33 4 0 0 0 0.1875 3 30872 30612;30745;30872 74.929 24.698 1 692920000 36062 10618 23983 24451 42479;42480;42481 42481 -0.011948054821914411 LPRTDYSFHKF 11 Unmodified _LPRTDYSFHKF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9107055664062 3 470.910338 1409.70918 -0.14618 -6.884E-05 0.8318 0.0003917 0.68561 0.00032286 470.9106362454086 37.786 0.21169 37.803 37.691 37.902 0.01704 28 9 4 0 0 0 0.23131 1 20068 20068 30.414 20.649 1 11916000 36063 10618 23984 24452 42482 42482 0.02071848863147352 LPRTDYSFHKF 11 Unmodified _LPRTDYSFHKF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.4349060058594 4 353.434573 1409.70918 -0.14751 -5.2136E-05 0.76336 0.0002698 0.61585 0.00021766 353.43485820474564 37.778 0.23155 37.795 37.691 37.922 0.01704 33 10 4 0 0 0 0.65706 1 20069 20069 8.2864 5.6552 1 6855000 36064 10618 23984 24452 42483 42483 0.02071848863147352 LPRTDYSFHKF 11 Unmodified _LPRTDYSFHKF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.4351196289062 4 353.434573 1409.70918 1.5799 0.0005584 -0.30146 -0.00010655 1.2785 0.00045186 353.4343541937235 42.409 0.28841 37.724 37.544 37.832 -4.6846 36 18 3 0 0 0 0.51719 1 25572 25572 15.538 7.252 1 12482000 36065 10618 23984 24452 42484 42484 0.02071848863147352 LPRTDYSFHKF 11 Unmodified _LPRTDYSFHKF_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.9106750488281 3 470.910338 1409.70918 0.7935 0.00037367 -0.79979 -0.00037663 -0.0062977 -2.9656E-06 470.9098940656943 42.391 0.22753 37.707 37.592 37.82 -4.6846 27 14 3 0 0 0 0.23131 1 25573 25573 30.414 3.3253 1 12556000 36066 10618 23984 24452 42485 42485 0.02071848863147352 LPRTPRTRRWR 11 Unmodified _LPRTPRTRRWR_ 0 0 0 ENST00000428040.6_1_6:30313057-30313281:+|nuORF ENST00000428040.6_1_6:30313057-30313281:+|nuORF ENST00000428040.6_1_6:30313057-30313281:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 747.9458618164062 2 747.947467 1493.88038 NaN NaN NaN NaN NaN NaN NaN 97.592 1 97.574 97.074 98.074 -0.018188 0 0 0 0.94301 1 54214 54214 0.35063 0 1 36067 13203 23985 24453 42486 42486 0.1531964374501058 LPRVADILTQL 11 Unmodified _LPRVADILTQL_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.8783569335938 2 619.876988 1237.73942 0.84979 0.00052677 0.21148 0.00013109 1.0613 0.00065786 619.877166940973 99.428 0.10485 93.252 93.201 93.306 -6.1757 10 6 2 0 0 0 0.083469 1 66241 66241 44.392 15.897 1 25925000 36068 7446 23986 24454 42487 42487 0.13006207528360392 LPRVDDVL 8 Unmodified _LPRVDDVL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF;ENST00000588721.1_1_17:75208810-75210102:+|nuORF ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7681884765625 2 463.768917 925.523281 1.1596 0.00053781 -1.3877 -0.00064359 -0.2281 -0.00010578 463.76832744996415 54.149 0.392 54.149 53.899 54.291 0 35 17 3 0 0 0 0.60622 1 30000 30000 25.399 4.9457 1 4919400 36069 4157 23987 24455 42488 42488 0.057540714145034144 LPRVFVRL 8 Unmodified _LPRVFVRL_ 0 0 0 ENST00000377716.6_1_9:37903591-37903951:-|nuORF ENST00000377716.6_1_9:37903591-37903951:-|nuORF ENST00000377716.6_1_9:37903591-37903951:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8279724121094 2 500.326737 998.63892 1.704 0.00085254 -1.5663 -0.00078365 0.13769 6.8889E-05 500.32610991262334 107.93 0.1834 101.75 101.66 101.84 -6.1757 42 31 2 0 0 0 0.80975 1 72182 72182 0.79363 0 1 1815700 36070 12528 23988 24456 42489 42489 0.13954640056022072 LPRVGRPQAF 10 Unmodified _LPRVGRPQAF_ 0 0 0 REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF REV__ENST00000318003.11_1_19:14041215-14041674:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.8932495117188 3 380.89273 1139.65636 0.86509 0.00032951 1.2614 0.00048046 2.1265 0.00080997 380.8935587972448 41.504 0.42207 36.896 36.655 37.077 -4.6079 38 27 2 0 0 0 0.22667 1 24828 24828 6.1918 0 1 23140000 + 36071 25481 23989 24457 42490 42490 0.09211935591042675 LPRVPYRDSKL 11 Unmodified _LPRVPYRDSKL_ 0 0 0 nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000563666.1_1_16:29810259-29810893:+|nuORF nc|ENSG00000079616|Q14807-2|KIF22 nc|ENSG00000079616|Q14807-2|KIF22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.9324035644531 3 448.597983 1342.77212 1.2182 0.0005465 0.94345 0.00042323 2.1617 0.00096973 448.93291002076563 37.962 0.40101 33.593 33.364 33.765 -4.3689 50 23 3 0 0 0 0.17638 1 22307 22307 33.632 16.584 1 13630000 36072 1281 23990 24458 42491 42491 0.11444414651214174 LPRVTEAAPL 10 Unmodified _LPRVTEAAPL_ 0 0 0 REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2755126953125 2 533.816399 1065.61824 0.42906 0.00022904 -0.20054 -0.00010705 0.22852 0.00012199 533.8164434365689 52.061 0.35524 51.627 51.474 51.83 -0.43367 45 17 4 0 0 0 0.22489 1 28208 28208 18.146 5.1039 1 10549000 + 36073 25331 23991 24459 42492 42492 0.08806004885673246 LPRWHLQV 8 Unmodified _LPRWHLQV_ 0 0 0 ENSG00000178015|ENST00000380007|GPR150 ENSG00000178015|ENST00000380007|GPR150 ENSG00000178015|ENST00000380007|GPR150 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.30810546875 2 524.806168 1047.59778 -0.18764 -9.8476E-05 0.029777 1.5627E-05 -0.15787 -8.2849E-05 524.8061399285467 69.555 0.57274 69.076 68.851 69.424 -0.47903 74 24 5 0 0 0 8.7369 1 38182 38182 14.582 1.0738 1 37683000 36074 8720 23992 24460 42493 42493 0.07588879016566352 LPRWLKLA 8 Unmodified _LPRWLKLA_ 0 0 0 ENST00000460508.3_1_2:74730137-74730440:-|nuORF ENST00000460508.3_1_2:74730137-74730440:-|nuORF ENST00000460508.3_1_2:74730137-74730440:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 498.8222045898438 2 498.821287 995.628021 NaN NaN NaN NaN NaN NaN NaN 24.922 1 22.039 21.539 22.539 -2.8831 0 0 0 0.93066 1 13601 13601 14.582 0 1 36075 13640 23993 24461 42494 42494 0.1300323768174394 LPRYETTHVF 10 Unmodified _LPRYETTHVF_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MSMS AL20221201_MKP_PDAC_01 4 421.5563049316406 3 421.555784 1261.64552 NaN NaN NaN NaN NaN NaN NaN 45.847 1 40.892 40.392 41.392 -4.9549 0 0 0 0.8671 1 28219 28219 5.4027 0.99656 1 36076 2602 23994 24462 42495 42495 0.025164884260675535 LPSAASFTF 9 Unmodified _LPSAASFTF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 471.268798828125 2 470.742368 939.470183 0.64496 0.00030361 0.92348 0.00043472 1.5684 0.00073833 470.7423838071871 82.864 0.24717 76.688 76.521 76.768 -6.1757 13 13 2 0 0 0 0.07019 1 54398 54398 36.044 15.591 1 5176200 36077 10361 23995 24463 42496 42496 -0.001973063681475651 LPSAATLRY 9 Unmodified _LPSAATLRY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2818908691406 2 496.282192 990.549831 -0.033102 -1.6428E-05 0.46366 0.00023011 0.43056 0.00021368 496.28231906018715 45.126 0.2562 44.802 44.64 44.896 -0.32425 23 17 2 0 0 0 0.0090524 1 24043 24043 85.642 24.284 1 43434000 36078 7636 23996 24464 42497 42497 0.054177603058633395 LPSAATLRY 9 Unmodified _LPSAATLRY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2827758789062 2 496.282192 990.549831 0.049445 2.4538E-05 -0.0026976 -1.3388E-06 0.046747 2.32E-05 496.28213645590387 44.865 0.29869 44.843 44.657 44.955 -0.022068 32 14 3 0 0 0 0.062454 1 24035 24035 41.956 5.4494 1 19577000 36079 7636 23996 24464 42498 42498 0.054177603058633395 LPSAATLRY 9 Unmodified _LPSAATLRY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2835998535156 2 496.282192 990.549831 1.1463 0.0005689 -0.26664 -0.00013233 0.87968 0.00043657 496.28206920388146 50.481 0.51587 44.942 44.647 45.163 -5.5391 101 32 4 0 0 0 0.01958 3 31509 31509;31638;31781 63.961 19.571 1 228150000 36080 7636 23996 24464 42499;42500;42501 42499 0.054177603058633395 LPSADSVQY 9 Unmodified _LPSADSVQY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2421569824219 2 490.24019 978.465826 -0.36013 -0.00017655 1.0502 0.00051485 0.69006 0.0003383 490.2409771819621 41.43 0.15535 41.43 41.344 41.499 0 13 7 2 0 0 0 0.022193 1 22326 22326 61.357 25.313 1 8582000 36081 6396 23997 24465 42502 42502 -0.024268155817139814 LPSADSVQY 9 Unmodified _LPSADSVQY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.4728393554688 1 979.473103 978.465826 -0.45322 -0.00044392 0.61491 0.00060228 0.16169 0.00015837 979.473391437012 41.453 0.1167 41.453 41.364 41.48 0 8 5 2 0 0 0 0.0041763 1 22345 22345 120.45 45.521 1 5874300 36082 6396 23997 24465 42503 42503 -0.024268155817139814 LPSADSVQY 9 Unmodified _LPSADSVQY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MSMS AL20221201_MKP_PDAC_01 4 490.2409973144531 2 490.24019 978.465826 NaN NaN NaN NaN NaN NaN NaN 48.738 1 43.342 42.842 43.842 -5.3961 0 0 0 0.04157 1 30385 30385 61.357 9.7277 1 36083 6396 23997 24465 42504 42504 -0.024268155817139814 LPSADVYRF 9 Unmodified _LPSADVYRF_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2803955078125 2 534.279649 1066.54475 NaN NaN NaN NaN NaN NaN NaN 53.859 1 53.392 52.892 53.892 -0.46664 0 0 0 0.18351 1 29156 29156 32.786 12.332 1 36084 3173 23998 24466 42505 42505 0.014134564432424668 LPSAEAELIF 10 Unmodified _LPSAEAELIF_ 0 0 0 nc|ENSG00000061492|Q9H1J5|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A;ENSG00000061492|ENST00000506684|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2960205078125 2 545.294965 1088.57538 0.41762 0.00022773 1.3967 0.00076164 1.8144 0.00098936 545.2956111767849 61.051 0.50992 61.051 60.811 61.321 0 40 21 3 0 0 0 0.1028 1 33983 33983 46.021 11.919 1 4462500 36085 838 23999 24467 42506 42506 0.0346319003760982 LPSAEAELIF 10 Unmodified _LPSAEAELIF_ 0 0 0 nc|ENSG00000061492|Q9H1J5|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A;ENSG00000061492|ENST00000506684|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A nc|ENSG00000061492|Q9H1J5|WNT8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3006591796875 2 545.294965 1088.57538 0.64683 0.00035271 -2.8399 -0.0015486 -2.1931 -0.0011959 545.293301812168 67.102 0.5914 60.926 60.681 61.272 -6.1757 78 32 3 0 0 0 0.16524 1 43901 43901 37.974 5.6685 1 42604000 36086 838 23999 24467 42507 42507 0.0346319003760982 LPSAETTRT 9 Unmodified _LPSAETTRT_ 0 0 0 REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.2571105957031 2 488.258914 974.503274 NaN NaN NaN NaN NaN NaN NaN 85.775 1 79.599 79.099 80.099 -6.1757 0 0 0 0.39043 1 56517 56517 20.454 7.9221 1 + 36087 29292 24000 24468 42508 42508 0.01500275683918062 LPSAFYIKL 9 Unmodified _LPSAFYIKL_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3141479492188 2 526.312961 1050.61137 0.3693 0.00019436 -2.4003 -0.0012633 -2.031 -0.0010689 526.3130207266398 78.677 0.40134 78.729 78.532 78.934 0.052444 47 15 5 0 0 0 0.0094097 2 43414 43414;43521 82.529 42.572 1 11601000 36088 4587 24001 24469 42509;42510 42509 0.08808692005140983 LPSAFYIKL 9 Unmodified _LPSAFYIKL_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2;ENST00000548785.1_1_12:46756051-46756147:-|nuORF ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3131103515625 2 526.312961 1050.61137 1.2164 0.00064021 -0.24718 -0.00013009 0.96923 0.00051012 526.3130785242656 94.525 0.43948 88.349 88.118 88.558 -6.1757 76 25 4 0 0 0 0.0089732 2 62645 62520;62645 86.332 46.382 1 38474000 36089 4587 24001 24469 42511;42512 42512 0.08808692005140983 LPSAKPPMR 9 Unmodified _LPSAKPPMR_ 0 0 0 REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF REV__ENST00000320785.9_1_17:4903608-4904652:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7853393554688 2 498.786587 995.558621 NaN NaN NaN NaN NaN NaN NaN 77.269 1 77.269 76.769 77.769 0 0 0 0 0.84564 1 42954 42954 2.0598 0.40713 1 + 36090 25505 24002 24470 42513 42513 0.06066410670678124 LPSALPPVM 9 Oxidation (M) _LPSALPPVM(Oxidation (M))_ LPSALPPVM(1) LPSALPPVM(44) 0 0 1 ITSN1|p.L441Tfs*2|1|0.05|ENSG00000205726|chr21:33774741-33774742|-/A|frameshift_variant;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-2|ITSN1;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-4|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;ENSG00000205726|ENST00000381318|ITSN1 ITSN1|p.L441Tfs*2|1|0.05|ENSG00000205726|chr21:33774741-33774742|-/A|frameshift_variant ITSN1|p.L441Tfs*2|1|0.05|ENSG00000205726|chr21:33774741-33774742|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7628173828125 2 470.762246 939.50994 0.40617 0.00019121 2.6071 0.0012273 3.0133 0.0014186 470.7623934345251 55.656 0.33445 55.178 54.986 55.32 -0.47798 23 15 2 0 0 0 0.052168 1 30161 30161 44.407 26.272 1 960360 + 36091 139 24003 24471 42514 42514 10 0.03776497310934701 LPSAQRFHINL 11 Unmodified _LPSAQRFHINL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.578857421875 3 432.578811 1294.7146 0.33132 0.00014332 0.034374 1.4869E-05 0.3657 0.00015819 432.5789020718444 55.127 0.29956 55.058 54.939 55.238 -0.068741 46 14 4 0 0 0 0.51719 1 29949 29949 15.538 5.9945 1 12458000 36092 7822 24004 24472 42515 42515 0.07903572445684404 LPSAQRFHINL 11 Unmodified _LPSAQRFHINL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5801391601562 3 432.578811 1294.7146 1.2356 0.00053449 -0.41899 -0.00018125 0.81661 0.00035325 432.5786520313936 79.868 0.55508 73.692 73.387 73.942 -6.1757 39 33 2 0 0 0 0.078696 2 52469 52336;52469 44.945 30.726 1 15773000 36093 7822 24004 24472 42516;42517 42517 0.07903572445684404 LPSAQRFHINL 11 Unmodified _LPSAQRFHINL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MSMS AL20221201_MKP_PDAC_01 4 432.5787658691406 3 432.578811 1294.7146 NaN NaN NaN NaN NaN NaN NaN 80.214 1 74.038 73.538 74.538 -6.1757 0 0 0 0.43177 1 52618 52618 27.129 11.39 1 36094 7822 24004 24472 42518 42518 0.07903572445684404 LPSARPEL 8 Unmodified _LPSARPEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7532653808594 2 441.75581 881.497067 0.57054 0.00025204 -3.3021 -0.0014587 -2.7316 -0.0012067 441.75412093159474 36.907 0.24337 36.907 36.775 37.018 0 18 11 2 0 0 0 0.50364 1 19597 19597 34.402 3.7652 1 2937900 36095 3160 24005 24473 42519 42519 0.05157802243047627 LPSARPEL 8 Unmodified _LPSARPEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7563171386719 2 441.75581 881.497067 1.1164 0.00049318 0.48286 0.00021331 1.5993 0.00070649 441.7558776675314 42.047 0.31642 37.362 37.143 37.46 -4.6846 24 19 2 0 0 0 0.46677 1 25337 25337 37.974 0 1 8589000 36096 3160 24005 24473 42520 42520 0.05157802243047627 LPSARPLSL 9 Unmodified _LPSARPLSL_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.29248046875 2 477.292559 952.570566 0.53003 0.00025298 0.0093592 4.4671E-06 0.53939 0.00025745 477.2925049992165 50.808 0.21368 50.754 50.648 50.862 -0.053875 16 10 2 0 0 0 0.062454 1 27484 27484 41.956 7.5538 1 1684400 36097 761 24006 24474 42521 42521 0.09238350685518526 LPSASWGTLAC 11 Unmodified _LPSASWGTLAC_ 0 0 0 ENST00000330398.8_1_16:2569600-2569672:+|nuORF ENST00000330398.8_1_16:2569600-2569672:+|nuORF ENST00000330398.8_1_16:2569600-2569672:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.270263671875 2 553.270967 1104.52738 1.3348 0.00073851 -1.8584 -0.0010282 -0.52358 -0.00028968 553.2699627872603 82.452 0.32028 82.514 82.371 82.691 0.062004 19 11 2 0 0 0 0.35243 1 45607 45607 24.021 1.2843 1 7037500 36098 11849 24007 24475 42522 42522 -0.020702071540654288 LPSATRALEL 10 Unmodified _LPSATRALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.81591796875 2 535.813856 1069.61316 0.0065065 3.4863E-06 -0.24436 -0.00013093 -0.23785 -0.00012744 535.8137781946674 54.772 0.31618 54.305 54.124 54.44 -0.46664 38 15 3 0 0 0 0.022716 2 29632 29632;29733 73.196 31.357 1 16553000 36099 6628;16309;16310 24008 24476 42523;42524 42523 0.08113701023080466 LPSATRALEL 10 Unmodified _LPSATRALEL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8148193359375 2 535.813856 1069.61316 1.0554 0.0005655 -0.25962 -0.00013911 0.79579 0.00042639 535.8138854482326 60.698 0.45776 54.55 54.369 54.827 -6.1478 45 24 2 0 0 0 0.095172 2 39030 39030;39152 47.732 12.8 1 43540000 36100 6628;16309;16310 24008 24476 42525;42526 42525 0.08113701023080466 LPSAYYEAALL 11 Unmodified _LPSAYYEAALL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8206176757812 2 605.821347 1209.62814 0.74233 0.00044972 -0.37786 -0.00022892 0.36447 0.0002208 605.8210995070375 81.327 0.16022 80.835 80.75 80.91 -0.49247 11 6 2 0 0 0 0.58219 1 44530 44530 12.241 2.1667 1 782230 36101 4239 24009 24477 42527 42527 0.03171148100409482 LPSCSEMTCL 10 Unmodified _LPSCSEMTCL_ 0 0 0 REV__ENST00000371586.6_2_1:52818540-52818735:-|nuORF REV__ENST00000371586.6_2_1:52818540-52818735:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2300415039062 2 542.229596 1082.44464 NaN NaN NaN NaN NaN NaN NaN 42.816 1 42.816 42.316 43.316 0 0 0 0 0.91523 1 23207 23207 7.2892 2.96 1 + 36102 26086 24010 24478 42528 42528 -0.09328608268742755 LPSCTHHE 8 Unmodified _LPSCTHHE_ 0 0 0 REV__ENSG00000086015|ENST00000361297|MAST2 REV__ENSG00000086015|ENST00000361297|MAST2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.2877197265625 2 462.205627 922.396701 0.801 0.00037023 0.93766 0.00043339 1.7387 0.00080362 462.20583787054846 63.227 0.34152 57.051 56.98 57.322 -6.1757 36 19 3 0 0 0 8.7369 1 40927 40927 10.183 10.183 1 24434000 + 36103 17762 24011 24479 42529 42529 -0.06760178082265611 LPSDADWDDL 10 Unmodified _LPSDADWDDL_ 0 0 0 ENST00000464038.5_1_2:31155024-31369832:-|nuORF ENST00000464038.5_1_2:31155024-31369832:-|nuORF ENST00000464038.5_1_2:31155024-31369832:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.311767578125 2 573.751118 1145.48768 0.72077 0.00041354 -1.4689 -0.00084275 -0.74808 -0.00042921 573.7502557836477 50.897 0.33876 50.483 50.258 50.597 -0.41351 24 16 2 0 0 0 0.23566 1 27461 27461 3.9444 0 1 1712100 36104 13706 24012 24480 42530 42530 -0.0792405562381191 LPSDATVVL 9 Unmodified _LPSDATVVL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.5208740234375 1 914.519325 913.512048 0.17306 0.00015827 0.89251 0.00081622 1.0656 0.00097449 914.5201278126432 61.265 0.40949 61.265 61.024 61.433 0 44 17 3 0 0 0 0.0083087 2 34186 34082;34186 97.075 39.603 1 4647800 36105 9425 24013 24481 42531;42532 42532 0.05183249320384675 LPSDATVVL 9 Unmodified _LPSDATVVL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113960786-113974926:+|nuORF ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.763916015625 2 457.7633 913.512048 0.63015 0.00028846 0.33545 0.00015356 0.9656 0.00044202 457.76343566930655 61.248 0.40972 61.248 61.045 61.455 0 41 17 3 0 0 0 0.087258 1 34213 34213 36.044 5.8194 1 2710700 36106 9425 24013 24481 42533 42533 0.05183249320384675 LPSDFQHKF 9 Unmodified _LPSDFQHKF_ 0 0 0 ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5260009765625 3 373.525825 1117.55564 -0.062747 -2.3438E-05 0.3793 0.00014168 0.31655 0.00011824 373.5259177621071 37.669 0.22172 37.398 37.303 37.525 -0.27133 16 9 3 0 0 0 0.32235 1 19827 19827 11.518 3.9089 1 2675000 36107 334 24014 24482 42534 42534 0.0015685881753597641 LPSDFQHKF 9 Unmodified _LPSDFQHKF_ 0 0 0 ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 ENSG00000006432|ENST00000554752|MAP3K9 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 373.525825 1117.55564 1.9869 0.00074217 -0.83016 -0.00031009 1.1568 0.00043208 373.5253588188133 41.868 0.33443 37.26 37.077 37.412 -4.6079 -0.068744 -0.00084231 NaN 11.518 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 8752300 36108 334 24014 24482 0.0015685881753597641 LPSDFSIHEF 10 Unmodified _LPSDFSIHEF_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7 ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2889404296875 2 596.287671 1190.56079 -0.046521 -2.774E-05 2.5821 0.0015397 2.5356 0.001512 596.2897413417993 65.391 0.20235 65.391 65.272 65.475 0 12 7 2 0 0 0 0.35903 1 36496 36496 24.021 5.8742 1 598390 36109 7442 24015 24483 42535 42535 -0.026868821105381357 LPSDFSIHEF 10 Unmodified _LPSDFSIHEF_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7 ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.287353515625 2 596.287671 1190.56079 0.10864 6.4781E-05 -0.14374 -8.5713E-05 -0.035105 -2.0933E-05 596.2876335603784 65.916 0.27322 65.432 65.267 65.54 -0.48428 16 11 2 0 0 0 0.0575 1 35981 35981 56.177 16.227 1 3861900 36110 7442 24015 24483 42536 42536 -0.026868821105381357 LPSDHSVKY 9 Unmodified _LPSDHSVKY_ 0 0 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MSMS AL20221201_MKP_PDAC_01 4 523.2691040039062 2 523.269281 1044.52401 NaN NaN NaN NaN NaN NaN NaN 25.939 1 22.988 22.488 23.488 -2.9511 0 0 0 0.025332 1 14238 14238 71.922 28.954 1 36111 696 24016 24484 42537 42537 0.0035286606357658457 LPSDIAAEA 9 Unmodified _LPSDIAAEA_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4490356445312 1 886.451639 885.444362 0.18064 0.00016013 -1.6045 -0.0014223 -1.4239 -0.0012622 886.450064519616 42.208 0.13896 42.208 42.179 42.318 0 9 6 2 0 0 0 0.047196 1 22849 22849 46.021 8.047 1 3175400 36112 1536 24017 24485 42538 42538 -0.00294200610437656 LPSDIAAEA 9 Unmodified _LPSDIAAEA_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7300109863281 2 443.729458 885.444362 1.2539 0.00055641 -0.7775 -0.000345 0.47643 0.00021141 443.72922799209056 49.645 0.2829 44.105 44 44.282 -5.5391 20 17 2 0 0 0 0.10734 1 31099 31099 32.305 0 1 14934000 36113 1536 24017 24485 42539 42539 -0.00294200610437656 LPSDIAVIMY 10 Oxidation (M) _LPSDIAVIM(Oxidation (M))Y_ LPSDIAVIM(1)Y LPSDIAVIM(55)Y 0 0 1 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2971801757812 2 569.29665 1136.57875 0.74142 0.00042209 -0.38232 -0.00021765 0.3591 0.00020444 569.2965308169427 72.16 0.38515 71.684 71.469 71.854 -0.47609 54 16 5 0 0 0 0.063761 2 39436 39436;39536 54.774 38.926 1 9861000 36114 3739 24018 24486 42540;42541 42540 653 0.015921168199611202 LPSDIAVIMY 10 Unmodified _LPSDIAVIMY_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3031005859375 2 561.299193 1120.58383 NaN NaN NaN NaN NaN NaN NaN 85.95 1 85.447 84.947 85.947 -0.5025 0 0 0 0.85122 1 47036 47036 10.074 3.3508 1 36115 3739 24018 24487 42542 42542 0.028364206825926885 LPSDIAVIMY 10 Unmodified _LPSDIAVIMY_ 0 0 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3003540039062 2 561.299193 1120.58383 1.3598 0.00076325 0.99248 0.00055708 2.3523 0.0013203 561.3001038675504 95.207 0.56796 89.031 88.748 89.316 -6.1757 66 31 3 0 0 0 0.16524 2 63106 62990;63106 37.974 22.127 1 23877000 36116 3739 24018 24487 42543;42544 42544 0.028364206825926885 LPSDIDMPL 9 Unmodified _LPSDIDMPL_ 0 0 0 REV__nc|ENSG00000170820|P23945-2|FSHR REV__nc|ENSG00000170820|P23945-2|FSHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7554931640625 2 500.754618 999.494683 0.37836 0.00018947 -0.073753 -3.6932E-05 0.30461 0.00015253 500.75464570823937 82.838 0.24035 82.838 82.697 82.938 0 18 10 2 0 0 0 0.55775 1 45910 45910 3.9444 1.0552 1 762730 + 36117 22512 24019 24488 42545 42545 -0.005084142769419486 LPSDIDMPL 9 Unmodified _LPSDIDMPL_ 0 0 0 REV__nc|ENSG00000170820|P23945-2|FSHR REV__nc|ENSG00000170820|P23945-2|FSHR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.754618 999.494683 0.37836 0.00018947 -0.073753 -3.6932E-05 0.30461 0.00015253 500.75464570823937 82.838 0.24035 82.838 82.697 82.938 0 0.017173 -3.1481E-06 NaN 3.9444 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 762730 + 36118 22512 24019 24488 -0.005084142769419486 LPSDIDMPL 9 Unmodified _LPSDIDMPL_ 0 0 0 REV__nc|ENSG00000170820|P23945-2|FSHR REV__nc|ENSG00000170820|P23945-2|FSHR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 500.754618 999.494683 0.27788 0.00013915 -0.062133 -3.1113E-05 0.21574 0.00010803 500.75482717453434 83.301 0.19547 82.803 82.719 82.914 -0.49751 -0.017173 8.4894E-06 NaN 3.9444 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 328840 + 36119 22512 24019 24488 -0.005084142769419486 LPSDKALVL 9 Unmodified _LPSDKALVL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2947082519531 2 478.294768 954.574983 0.52691 0.00025202 -0.63764 -0.00030498 -0.11073 -5.2963E-05 478.2943975898403 53.43 0.38456 53.43 53.221 53.606 0 46 17 4 0 0 0 0.062454 1 29647 29647 41.956 9.1699 1 24669000 36120 6155;16276 24020 24489 42546 42546 0.09587815108409359 LPSDKALVL 9 Unmodified _LPSDKALVL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2950744628906 2 478.294768 954.574983 0.54352 0.00025996 -0.22489 -0.00010757 0.31863 0.0001524 478.29458939276424 53.838 0.37703 53.372 53.17 53.547 -0.46664 45 18 3 0 0 0 0.044296 2 29196 29085;29196 47.594 7.6371 1 17330000 36121 6155;16276 24020 24489 42547;42548 42548 0.09587815108409359 LPSDKALVL 9 Unmodified _LPSDKALVL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2955932617188 2 478.294768 954.574983 0.93366 0.00044657 0.11507 5.5035E-05 1.0487 0.0005016 478.29476775351355 59.584 0.44667 53.47 53.203 53.65 -6.1147 59 24 3 0 0 0 0.033587 2 38128 38128;38253 53.404 12.954 1 102910000 36122 6155;16276 24020 24489 42549;42550 42549 0.09587815108409359 LPSDKIYP 8 Unmodified _LPSDKIYP_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ENST00000524655.5_1_11:128842326-128843235:-|nuORF nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.5031127929688 1 932.50876 931.501483 0.30441 0.00028387 0.24449 0.00022799 0.5489 0.00051186 932.5091658632379 55.411 0.93064 54.933 54.528 55.459 -0.47798 87 44 3 0 0 0 0.72953 1 29892 29892 14.582 0 1 3333900 36123 4653 24021 24490 42551 42551 0.03299266665953837 LPSDLGTLS 9 Unmodified _LPSDLGTLS_ 0 0 0 ENST00000333461.5_1_17:37381754-37381898:-|nuORF ENST00000333461.5_1_17:37381754-37381898:-|nuORF ENST00000333461.5_1_17:37381754-37381898:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7459106445312 2 451.745108 901.475663 0.21596 9.756E-05 0.18789 8.4876E-05 0.40385 0.00018244 451.74537592383325 48.209 0.28187 48.209 48.112 48.394 0 22 13 2 0 0 0 0.052168 1 26447 26447 44.407 0 1 4055000 36124 11880 24022 24491 42552 42552 0.020983724236884882 LPSDLLENVL 10 Unmodified _LPSDLLENVL_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF;ENST00000480785.5_1_6:32916643-32917198:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.814453125 2 556.813522 1111.61249 0.60647 0.00033769 0.91593 0.00051 1.5224 0.00084769 557.3154669947319 93.931 0.268 93.51 93.325 93.593 -0.42043 22 11 3 0 0 0 0.57893 1 51292 51292 12.241 5.5175 1 541950 36125 10255 24023 24492 42553 42553 0.061148615833644726 LPSDLRTISL 10 Unmodified _LPSDLRTISL_ 0 0 0 ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5 ENST00000413704.5_1_3:9487316-9517772:+|nuORF ENST00000413704.5_1_3:9487316-9517772:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.784423828125 2 557.826963 1113.63937 0.62082 0.00034631 1.1038 0.00061575 1.7247 0.00096206 558.3284368624464 63.126 0.25523 63.104 62.927 63.182 -0.021614 18 12 2 0 0 0 0.22438 1 34508 34508 20.581 10.43 1 1966700 36126 7722 24024 24493 42554 42554 0.08709970194581729 LPSDLRTISL 10 Unmodified _LPSDLRTISL_ 0 0 0 ENST00000413704.5_1_3:9487316-9517772:+|nuORF;ENST00000466242.5_1_3:9484907-9517772:+|nuORF;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5 ENST00000413704.5_1_3:9487316-9517772:+|nuORF ENST00000413704.5_1_3:9487316-9517772:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.826963 1113.63937 0.52041 0.0002903 0.81321 0.00045363 1.3336 0.00074393 557.8275366928195 63.588 0.24307 63.102 62.969 63.212 -0.48617 -0.0011102 -8.9762E-05 NaN 20.581 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1597400 36127 7722 24024 24493 0.08709970194581729 LPSDMAVAL 9 Oxidation (M) _LPSDM(Oxidation (M))AVAL_ LPSDM(1)AVAL LPSDM(51)AVAL 0 0 1 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.74169921875 2 466.741511 931.468469 0.71946 0.0003358 -0.32451 -0.00015146 0.39496 0.00018434 466.7413387905042 51.579 0.36251 51.579 51.348 51.71 0 32 16 2 0 0 0 0.038285 2 28410 28410;28516 50.855 22.368 1 47317000 36128 16412 24025 24494 42555;42556 42555 1818 -6.834484111095662E-06 LPSDMAVAL 9 Oxidation (M) _LPSDM(Oxidation (M))AVAL_ LPSDM(1)AVAL LPSDM(67)AVAL 0 0 1 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4751586914062 1 932.475745 931.468469 0.60625 0.00056531 -0.3541 -0.00033019 0.25214 0.00023512 932.4750415119561 51.612 0.36023 51.612 51.393 51.753 0 30 16 2 0 0 0 0.016184 2 28441 28441;28557 67.344 21.427 1 7739600 36129 16412 24025 24494 42557;42558 42557 1818 -6.834484111095662E-06 LPSDMAVAL 9 Oxidation (M) _LPSDM(Oxidation (M))AVAL_ LPSDM(1)AVAL LPSDM(85)AVAL 0 0 1 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4749755859375 1 932.475745 931.468469 0.19453 0.00018139 -0.046246 -4.3123E-05 0.14828 0.00013827 932.4751288009049 51.847 0.2659 51.847 51.73 51.996 0 17 11 2 0 0 0 0.0090851 1 28667 28667 85.357 30.583 1 5249000 36130 16412 24025 24494 42559 42559 1818 -6.834484111095662E-06 LPSDMAVAL 9 Unmodified _LPSDMAVAL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7447204589844 2 458.744053 915.473554 0.9342 0.00042856 -0.14217 -6.5221E-05 0.79202 0.00036334 458.7440402370249 75.099 0.60919 68.923 68.606 69.215 -6.1757 70 32 3 0 0 0 0.14602 1 48934 48934 28.487 5.3384 1 25011000 36131 16412 24025 24495 42560 42560 0.0124362041420909 LPSDMAVAL 9 Unmodified _LPSDMAVAL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.4825439453125 1 916.480831 915.473554 0.57954 0.00053113 -0.057627 -5.2814E-05 0.52191 0.00047832 916.4810511188517 75.101 0.57138 68.926 68.606 69.177 -6.1757 65 30 3 0 0 0 0.0090851 3 49081 48952;49081;49212 85.357 28.815 1 25818000 36132 16412 24025 24495 42561;42562;42563 42562 0.0124362041420909 LPSDQVMLVY 10 Unmodified _LPSDQVMLVY_ 0 0 0 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8042602539062 2 582.8021 1163.58965 NaN NaN NaN NaN NaN NaN NaN 73.088 1 72.612 72.112 73.112 -0.47588 0 0 0 0.96981 1 39996 39996 3.9444 1.3669 1 36133 6137 24026 24496 42564 42564 0.01439519194263994 LPSDQVMLVY 10 Unmodified _LPSDQVMLVY_ 0 0 0 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8021850585938 2 582.8021 1163.58965 0.98923 0.00057653 0.2312 0.00013475 1.2204 0.00071127 582.8015568935987 81.709 0.38757 75.533 75.343 75.73 -6.1757 35 21 2 0 0 0 0.16005 1 53599 53599 38.615 19.253 1 10311000 36134 6137 24026 24496 42565 42565 0.01439519194263994 LPSDSHFKITF 11 Unmodified _LPSDSHFKITF_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.2275695800781 3 431.227556 1290.66084 0.78704 0.00033939 -1.2818 -0.00055276 -0.4948 -0.00021337 431.2270649199437 58.347 0.56974 58.286 57.935 58.505 -0.060722 65 28 4 0 0 0 0.5942 1 31848 31848 11.631 5.8479 1 12076000 36135 9726 24027 24497 42566 42566 0.027133552232726288 LPSDTSVVL 9 Unmodified _LPSDTSVVL_ 0 0 0 ENSG00000188372|ENST00000394857|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENST00000310842.8_1_7:76239320-76240795:-|nuORF ENSG00000188372|ENST00000394857|ZP3 ENSG00000188372|ENST00000394857|ZP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.5140380859375 1 930.514239 929.506963 0.54287 0.00050514 0.53778 0.00050041 1.0806 0.0010056 930.5144020034118 58.148 0.30008 58.148 57.99 58.29 0 22 11 3 0 0 0 0.019303 1 32345 32345 64.236 0 1 1738400 36136 9654 24028 24498 42567 42567 0.03938945457787213 LPSDVKLKL 9 Unmodified _LPSDVKLKL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2743225097656 2 506.823692 1011.63283 0.30885 0.00015653 -0.20367 -0.00010323 0.10518 5.3307E-05 506.8234770915615 47.331 0.20444 46.979 46.86 47.064 -0.3526 16 9 2 0 0 0 0.14565 1 25368 25368 31.268 15.119 1 3073800 36137 6383 24029 24499 42568 42568 0.1274807703384795 LPSDVKLKL 9 Unmodified _LPSDVKLKL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8230895996094 2 506.823692 1011.63283 0.57013 0.00028896 -0.06345 -3.2158E-05 0.50668 0.0002568 506.8235748975721 52.267 0.22726 46.533 46.407 46.635 -5.7345 22 13 2 0 0 0 0.01085 1 32958 32958 78.06 24.228 1 30680000 36138 6383 24029 24499 42569 42569 0.1274807703384795 LPSDVSILY 9 Unmodified _LPSDVSILY_ 0 0 0 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7767944335938 2 503.776408 1005.53826 0.12862 6.4795E-05 0.6267 0.00031572 0.75532 0.00038051 503.77673715916086 72.132 0.38515 71.656 71.469 71.854 -0.47609 31 16 2 0 0 0 0.087258 2 39429 39429;39539 36.044 5.8194 1 2680200 36139 2225 24030 24500 42570;42571 42570 0.035715184918672094 LPSDVSILY 9 Unmodified _LPSDVSILY_ 0 0 0 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7748107910156 2 503.776408 1005.53826 1.072 0.00054004 -1.7097 -0.0008613 -0.6377 -0.00032126 503.77499865576374 79.93 0.72289 73.754 73.535 74.258 -6.1757 78 43 3 0 0 0 0.087258 2 52325 52325;52454 36.044 5.8194 1 44220000 36140 2225 24030 24500 42572;42573 42572 0.035715184918672094 LPSDVSILY 9 Unmodified _LPSDVSILY_ 0 0 0 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 ENSG00000104714|ENST00000262109|ERICH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1006.544921875 1 1006.54554 1005.53826 0.89839 0.00090427 0.096407 9.7038E-05 0.9948 0.0010013 1006.545260729458 79.913 0.75365 73.737 73.482 74.236 -6.1757 66 45 2 0 0 0 0.0083087 1 52536 52536 97.075 15.462 1 25287000 36141 2225 24030 24500 42574 42574 0.035715184918672094 LPSDVVTAV 9 Unmodified _LPSDVVTAV_ 0 0 0 nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT nc|ENSG00000065154|P04181-2|OAT nc|ENSG00000065154|P04181-2|OAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 901.5071411132812 1 900.503674 899.496398 0.42843 0.0003858 0.055208 4.9715E-05 0.48363 0.00043551 900.5036043804184 53.85 0.26296 53.85 53.705 53.968 0 26 11 3 0 0 0 0.2001 1 29823 29823 23.148 0 1 5807400 36142 893 24031 24501 42575 42575 0.04262962803340997 LPSDVVTAV 9 Unmodified _LPSDVVTAV_ 0 0 0 nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT nc|ENSG00000065154|P04181-2|OAT nc|ENSG00000065154|P04181-2|OAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7566223144531 2 450.755475 899.496398 0.77228 0.00034811 0.57541 0.00025937 1.3477 0.00060748 450.75561282086846 53.825 0.26296 53.825 53.705 53.968 0 25 11 3 0 0 0 0.038285 1 29855 29855 50.855 12.704 1 3959400 36143 893 24031 24501 42576 42576 0.04262962803340997 LPSDVVTAV 9 Unmodified _LPSDVVTAV_ 0 0 0 nc|ENSG00000065154|P04181-2|OAT;ENSG00000065154|ENST00000368845|OAT nc|ENSG00000065154|P04181-2|OAT nc|ENSG00000065154|P04181-2|OAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7555847167969 2 450.755475 899.496398 1.6736 0.00075439 -0.1639 -7.3881E-05 1.5097 0.00068051 450.7553499310609 62.479 0.35355 56.303 56.088 56.442 -6.1757 28 18 2 0 0 0 0.042911 1 40281 40281 48.346 6.2513 1 13827000 36144 893 24031 24501 42577 42577 0.04262962803340997 LPSDVVTGY 9 Unmodified _LPSDVVTGY_ 0 0 0 ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C ENSG00000153391|ENST00000334598|INO80C ENSG00000153391|ENST00000334598|INO80C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4834594726562 1 950.482939 949.475663 0.042932 4.0806E-05 0.80395 0.00076414 0.84688 0.00080494 950.4836274868215 49.492 0.27687 49.492 49.352 49.629 0 29 11 3 0 0 0 0.0031966 2 27199 27199;27317 125.62 54.909 1 11463000 36145 6261 24032 24502 42578;42579 42578 -0.0010962757631887143 LPSDVVTGY 9 Unmodified _LPSDVVTGY_ 0 0 0 ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C ENSG00000153391|ENST00000334598|INO80C ENSG00000153391|ENST00000334598|INO80C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.746826171875 2 475.745108 949.475663 0.60834 0.00028942 -1.3389 -0.00063697 -0.73054 -0.00034755 475.7458942581727 49.445 0.62653 49.445 49.128 49.754 0 71 28 4 0 0 0 0.052168 1 27234 27234 44.407 26.272 1 6922200 36146 6261 24032 24502 42580 42580 -0.0010962757631887143 LPSDVVTGY 9 Unmodified _LPSDVVTGY_ 0 0 0 ENSG00000153391|ENST00000334598|INO80C;nc|ENSG00000153391|Q6PI98-4|INO80C ENSG00000153391|ENST00000334598|INO80C ENSG00000153391|ENST00000334598|INO80C MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.48046875 1 950.482939 949.475663 0.34818 0.00033094 -1.9483 -0.0018518 -1.6001 -0.0015209 950.4808341913119 57.83 0.30369 51.802 51.619 51.923 -6.0275 23 17 2 0 0 0 0.0048787 1 36930 36930 117.6 57.209 1 23311000 36147 6261 24032 24502 42581 42581 -0.0010962757631887143 LPSEAGFAEY 10 Unmodified _LPSEAGFAEY_ 0 0 0 ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.25146484375 2 542.253297 1082.49204 0.79079 0.00042881 -0.39306 -0.00021314 0.39773 0.00021567 542.2529044547915 54.203 0.38431 54.203 53.991 54.375 0 49 17 4 0 0 0 0.38092 1 30022 30022 22.736 4.5899 1 15405000 36148 4063 24033 24503 42582 42582 -0.04590546410236129 LPSEAGFAEY 10 Unmodified _LPSEAGFAEY_ 0 0 0 ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2536010742188 2 542.253297 1082.49204 0.31326 0.00016987 0.78544 0.00042591 1.0987 0.00059577 542.2532674323588 62.181 0.34824 56.005 55.843 56.191 -6.1757 41 20 3 0 0 0 0.085354 1 40160 40160 49.933 15.531 1 38540000 36149 4063 24033 24503 42583 42583 -0.04590546410236129 LPSEAGFAEY 10 Unmodified _LPSEAGFAEY_ 0 0 0 ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST ENSG00000128311|ENST00000249042|TST MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.253297 1082.49204 -0.074248 -4.0261E-05 -0.035597 -1.9303E-05 -0.10984 -5.9564E-05 542.252988320276 54.816 0.2216 54.349 54.261 54.482 -0.46664 0.072881 0.00035904 NaN 22.736 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2619700 36150 4063 24033 24503 -0.04590546410236129 LPSEDPYQL 9 Unmodified _LPSEDPYQL_ 0 0 0 ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3 ENST00000486056.1_1_9:35733177-35736720:+|nuORF ENST00000486056.1_1_9:35733177-35736720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2605590820312 2 531.261122 1060.50769 1.0368 0.00055082 -0.45548 -0.00024198 0.58134 0.00030884 531.2607107471674 54.589 0.43817 54.589 54.352 54.79 0 44 18 3 0 0 0 0.095405 2 30263 30263;30362 34.102 18.255 1 5363100 36151 2479 24034 24504 42584;42585 42584 -0.020142598931897737 LPSEEEGRLY 10 Unmodified _LPSEEEGRLY_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7935180664062 2 596.79586 1191.57717 0.63346 0.00037805 -1.9663 -0.0011735 -1.3329 -0.00079545 596.7943023475228 42.699 0.2191 38.015 37.934 38.153 -4.6846 19 13 2 0 0 0 0.021614 1 25832 25832 74.2 47.316 1 9484000 36152 5370 24035 24505 42586 42586 -0.010958009444266281 LPSEEVDQE 9 Unmodified _LPSEEVDQE_ 0 0 0 nc|ENSG00000162813|O95861-3|BPNT1;ENSG00000162813|ENST00000322067|BPNT1;nc|ENSG00000162813|O95861-2|BPNT1;ENST00000548668.1_1_1:220240634-220247398:-|nuORF nc|ENSG00000162813|O95861-3|BPNT1 nc|ENSG00000162813|O95861-3|BPNT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7766723632812 2 523.237844 1044.46113 0.85425 0.00044697 -1.7159 -0.0008978 -0.86161 -0.00045083 523.2368774688316 65.958 0.19574 65.968 65.855 66.051 0.0095596 12 9 2 0 0 0 0.209 1 36109 36109 7.2892 0.56607 1 2412800 36153 6916 24036 24506 42587 42587 -0.0593174451514642 LPSEHQTIL 9 Unmodified _LPSEHQTIL_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2855224609375 2 519.284931 1036.55531 0.15094 7.838E-05 -0.20409 -0.00010598 -0.053148 -2.7599E-05 519.2848566556182 40.326 0.41843 40.326 40.11 40.529 0 63 20 4 0 0 0 0.062454 1 21644 21644 41.956 12.874 1 30886000 36154 4833 24037 24507 42588 42588 0.03849439097666618 LPSEHQTIL 9 Unmodified _LPSEHQTIL_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2860717773438 2 519.284931 1036.55531 0.55796 0.00028974 0.59888 0.00031099 1.1568 0.00060073 519.2854900399165 40.581 0.24812 40.278 40.128 40.376 -0.30304 25 11 3 0 0 0 0.1773 1 21470 21470 25.399 4.9457 1 2060600 36155 4833 24037 24507 42589 42589 0.03849439097666618 LPSEHQTIL 9 Unmodified _LPSEHQTIL_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2852783203125 2 519.284931 1036.55531 0.79784 0.00041431 -0.32529 -0.00016892 0.47255 0.00024539 519.284741950221 45.663 0.50484 40.708 40.464 40.969 -4.9549 89 33 3 0 0 0 0.078314 2 28062 28062;28207 38.176 10.547 1 74553000 36156 4833 24037 24507 42590;42591 42590 0.03849439097666618 LPSEHQTIL 9 Unmodified _LPSEHQTIL_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.284931 1036.55531 0.55796 0.00028974 0.59888 0.00031099 1.1568 0.00060073 519.2854900399165 40.581 0.24812 40.278 40.128 40.376 -0.30304 -0.024117 0.00061916 NaN 41.956 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2060600 36157 4833 24037 24507 0.03849439097666618 LPSEIEVKY 9 Unmodified _LPSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.295166015625 2 539.294965 1076.57538 -0.070469 -3.8004E-05 -0.69918 -0.00037706 -0.76965 -0.00041507 539.2944334116065 48.899 0.53962 48.899 48.675 49.215 0 84 25 5 0 0 0 0.0082475 2 26817 26817;26929 92.653 48.795 1 874280000 36158 9832 24038 24508 42592;42593 42592 0.04015190037625871 LPSEIEVKY 9 Unmodified _LPSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.29541015625 2 539.294965 1076.57538 0.41314 0.0002228 0.43613 0.00023521 0.84927 0.00045801 539.2951495302365 49.284 0.38311 48.913 48.714 49.097 -0.37172 62 18 5 0 0 0 0.013609 1 26444 26444 70.332 39.695 1 121090000 36159 9832 24038 24508 42594 42594 0.04015190037625871 LPSEIEVKY 9 Unmodified _LPSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7964477539062 2 539.294965 1076.57538 0.23304 0.00012568 -0.32796 -0.00017687 -0.094918 -5.1189E-05 539.2947542645104 48.935 0.25563 48.891 48.772 49.027 -0.04369 31 12 3 0 0 0 0.036857 1 26398 26398 51.63 20.993 1 11927000 36160 9832 24038 24508 42595 42595 0.04015190037625871 LPSEIEVKY 9 Unmodified _LPSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.294921875 2 539.294965 1076.57538 0.9925 0.00053525 -0.14432 -7.7831E-05 0.84818 0.00045742 539.2947843427762 55.085 0.57196 49.164 48.888 49.459 -5.9211 141 35 5 0 0 0 0.010301 3 35026 34882;35026;35160 79.596 41.622 1 2158500000 36161 9832 24038 24508 42596;42597;42598 42597 0.04015190037625871 LPSEIEVKY 9 Unmodified _LPSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1077.58642578125 1 1077.58265 1076.57538 0.95467 0.0010287 -0.53648 -0.00057811 0.41819 0.00045063 1077.5828461446888 55.096 0.31887 49.175 49.031 49.35 -5.9211 26 19 2 0 0 0 0.00023314 1 35087 35087 149.91 81.833 1 18933000 36162 9832 24038 24508 42599 42599 0.04015190037625871 LPSEIRGSLVA 11 Unmodified _LPSEIRGSLVA_ 0 0 0 REV__ENST00000406452.7_1_8:87520885-87520966:-|nuORF REV__ENST00000406452.7_1_8:87520885-87520966:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8119506835938 2 571.332413 1140.65027 0.40993 0.0002342 4.0263 0.0023004 4.4363 0.0025346 571.3346329084599 58.499 0.21712 58.499 58.366 58.583 0 22 8 3 0 0 0 0.28752 1 32499 32499 13.906 3.8321 1 4399100 + 36163 26657 24039 24509 42600 42600 0.08557372568861865 LPSEKAIFLF 10 Unmodified _LPSEKAIFLF_ 0 0 0 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 ENSG00000034713|ENST00000037243|GABARAPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8370971679688 2 582.8368 1163.65905 1.2501 0.00072863 2.7238 0.0015875 3.974 0.0023162 582.8384587700665 98.405 0.11714 92.229 92.163 92.28 -6.1757 13 7 2 0 0 0 0.039874 1 65263 65263 63.227 13.673 1 17415000 36164 609 24040 24510 42601 42601 0.08376346205295704 LPSENHKEM 9 Unmodified _LPSENHKEM_ 0 0 0 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.1747741699219 3 362.174574 1083.50189 1.0171 0.00036836 -0.24034 -8.7045E-05 0.77674 0.00028131 362.1744363334976 17.169 0.22559 14.582 14.476 14.701 -2.5866 94 38 3 0 0 0 0.43515 1 8955 8955 10.899 1.355 1 10235000 36165 558 24041 24511 42602 42602 -0.03651681676501539 LPSENHKEM 9 Unmodified _LPSENHKEM_ 0 0 0 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 MSMS AL20221201_MKP_PDAC_01 4 542.758544921875 2 542.758223 1083.50189 NaN NaN NaN NaN NaN NaN NaN 17.166 1 14.579 14.079 15.079 -2.5866 0 0 0 0.15549 1 8952 8952 36.127 7.0454 1 36166 558 24041 24511 42603 42603 -0.03651681676501539 LPSERVFLF 9 Unmodified _LPSERVFLF_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3140869140625 2 554.313492 1106.61243 0.25471 0.00014119 2.8894 0.0016016 3.1441 0.0017428 554.314061491874 77.049 0.33814 77.1 76.934 77.272 0.05011 25 13 3 0 0 0 0.033747 1 42524 42524 49.554 7.4597 1 13087000 36167 682 24042 24512 42604 42604 0.0633890637402601 LPSETIQTY 9 Unmodified _LPSETIQTY_ 0 0 0 ENSG00000172086|ENST00000347055|KRCC1 ENSG00000172086|ENST00000347055|KRCC1 ENSG00000172086|ENST00000347055|KRCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2694702148438 2 526.268947 1050.52334 0.031064 1.6348E-05 -0.13271 -6.984E-05 -0.10164 -5.3492E-05 526.2690321180288 44.612 0.29602 44.612 44.472 44.769 0 35 15 3 0 0 0 0.0090851 1 24235 24235 85.357 26.678 1 15923000 36168 8183 24043 24513 42605 42605 0.00010026623863268469 LPSETIQTY 9 Unmodified _LPSETIQTY_ 0 0 0 ENSG00000172086|ENST00000347055|KRCC1 ENSG00000172086|ENST00000347055|KRCC1 ENSG00000172086|ENST00000347055|KRCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2703247070312 2 526.268947 1050.52334 NaN NaN NaN NaN NaN NaN NaN 44.731 1 44.731 44.231 45.231 0 0 0 0 0.080768 1 24354 24354 48.346 8.3885 1 36169 8183 24043 24513 42606 42606 0.00010026623863268469 LPSEVLRHVF 10 Unmodified _LPSEVLRHVF_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000494526.1_1_10:5948484-5951317:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5647583007812 3 399.564391 1195.67134 0.94322 0.00037688 -0.58014 -0.0002318 0.36308 0.00014508 399.56420367299563 84.082 0.73322 77.906 77.548 78.281 -6.1757 72 39 2 0 0 0 0.30673 3 55254 55254;55391;55553 27.088 19.143 1 23267000 36170 4609 24044 24514 42607;42608;42609 42607 0.08133382668370359 LPSEVLRHVF 10 Unmodified _LPSEVLRHVF_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000494526.1_1_10:5948484-5951317:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3418579101562 2 598.842948 1195.67134 0.34137 0.00020443 -1.3881 -0.00083124 -1.0467 -0.00062682 599.3429437323499 84.04 0.35745 77.864 77.606 77.964 -6.1757 28 18 2 0 0 0 0.029039 1 55296 55296 78.06 38.111 1 7131900 36171 4609 24044 24514 42610 42610 0.08133382668370359 LPSFREKAT 9 Unmodified _LPSFREKAT_ 0 0 0 REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF REV__ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7936401367188 2 524.792924 1047.57129 0.71598 0.00037574 -0.9866 -0.00051776 -0.27062 -0.00014202 524.7923907936228 51.596 0.53635 45.947 45.656 46.192 -5.649 89 33 3 0 0 0 0.098164 1 32611 32611 43.858 0 1 436920000 + 36172 24454 24045 24515 42611 42611 0.049411453345555856 LPSFYCDF 8 Unmodified _LPSFYCDF_ 0 0 0 REV__ENSG00000120334|ENST00000682279|CENPL REV__ENSG00000120334|ENST00000682279|CENPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.4170532226562 1 991.422981 990.415705 0.1901 0.00018847 -2.5554 -0.0025334 -2.3653 -0.002345 991.4188704365438 59.486 0.27173 59.486 59.355 59.627 0 18 11 2 0 0 0 0.50586 1 33129 33129 34.187 7.3037 1 960440 + 36173 19240 24046 24516 42612 42612 -0.0798864151122416 LPSGAILSL 9 Unmodified _LPSGAILSL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.53076171875 1 870.529495 869.522219 0.10782 9.386E-05 1.5171 0.0013207 1.6249 0.0014146 870.530856271431 79.345 0.41414 78.855 78.616 79.03 -0.48932 30 17 2 0 0 0 0.022193 1 43471 43471 61.357 6.5839 1 1377700 36174 4010 24047 24517 42613 42613 0.08223857045629757 LPSGAILSL 9 Unmodified _LPSGAILSL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.530029296875 1 870.529495 869.522219 1.1252 0.00097949 -0.22377 -0.0001948 0.90139 0.00078469 870.5292630356424 86.7 0.44817 80.524 80.322 80.77 -6.1757 34 23 2 0 0 0 0.0095811 2 57118 57118;57243 81.613 7.1903 1 13074000 36175 4010 24047 24517 42614;42615 42614 0.08223857045629757 LPSGDRVAV 9 Unmodified _LPSGDRVAV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2588806152344 2 457.258717 912.50288 0.38925 0.00017799 -0.044726 -2.0451E-05 0.34452 0.00015754 457.2586272820154 31.556 0.27905 31.556 31.441 31.72 0 23 13 2 0 0 0 0.19127 1 16426 16426 24.021 2.2739 1 2396100 36176 7921 24048 24518 42616 42616 0.043129007547122455 LPSGDRVAV 9 Unmodified _LPSGDRVAV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2580261230469 2 457.258717 912.50288 0.87416 0.00039972 -1.0973 -0.00050173 -0.2231 -0.00010202 457.25795487151544 36.2 0.30001 32.007 31.837 32.137 -4.1928 31 17 2 0 0 0 0.062454 1 21054 21054 41.956 3.8044 1 14641000 36177 7921 24048 24518 42617 42617 0.043129007547122455 LPSGDRVAV 9 Unmodified _LPSGDRVAV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 457.258717 912.50288 0.38925 0.00017799 -0.044726 -2.0451E-05 0.34452 0.00015754 457.2586272820154 31.556 0.27905 31.556 31.441 31.72 0 0 0 NaN 24.021 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2396100 36178 7921 24048 24518 0.043129007547122455 LPSGDRVAVSV 11 Unmodified _LPSGDRVAVSV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.3079223632812 2 550.308938 1098.60332 -0.17895 -9.8479E-05 -0.5309 -0.00029216 -0.70986 -0.00039064 550.3084852500856 40.994 0.29293 40.994 40.881 41.174 0 31 20 2 0 0 0 0.041516 1 22062 22062 55.249 24.545 1 15112000 36179 7921 24049 24519 42618 42618 0.05796513017708094 LPSGDRVAVSV 11 Unmodified _LPSGDRVAVSV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.308837890625 2 550.308938 1098.60332 0.49157 0.00027051 -0.46418 -0.00025544 0.027382 1.5069E-05 550.3087201799035 46.859 0.32914 41.779 41.59 41.919 -5.0805 72 54 2 0 0 0 0.017394 2 29037 28877;29037 78.61 78.61 1 38727000 36180 7921 24049 24519 42619;42620 42620 0.05796513017708094 LPSGDRVAVSV 11 Unmodified _LPSGDRVAVSV_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 550.308938 1098.60332 -0.094948 -5.2251E-05 -1.8391 -0.0010121 -1.934 -0.0010643 550.3081494597698 41.679 0.10005 41.679 41.589 41.689 0 -0.049663 -0.001069 NaN 78.61 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2197500 36181 7921 24049 24519 0.05796513017708094 LPSGEHPRM 9 Unmodified _LPSGEHPRM_ 0 0 0 ENST00000393784.7_1_5:172377864-172378200:+|nuORF ENST00000393784.7_1_5:172377864-172378200:+|nuORF ENST00000393784.7_1_5:172377864-172378200:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7817687988281 2 512.255651 1022.49675 0.26873 0.00013766 -0.53679 -0.00027497 -0.26806 -0.00013732 512.255574087749 89.321 0.30383 89.321 89.167 89.471 0 30 14 3 0 0 0 0.21367 1 49456 49456 4.756 4.756 1 1006900 36182 12715 24050 24520 42621 42621 -0.013599407484548465 LPSGKNILVF 10 Unmodified _LPSGKNILVF_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;nc|ENSG00000135720|O43237-2|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3287963867188 2 544.329142 1086.64373 0.47598 0.00025909 0.11484 6.251E-05 0.59081 0.0003216 544.3292081758169 68.262 0.3094 68.288 68.127 68.436 0.025154 36 15 3 0 0 0 0.018732 1 37468 37468 76.825 36.875 1 9101900 36183 4734 24051 24521 42622 42622 0.10387479408132094 LPSGKNILVF 10 Unmodified _LPSGKNILVF_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;nc|ENSG00000135720|O43237-2|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7926025390625 2 544.329142 1086.64373 0.96663 0.00052617 -3.6145 -0.0019675 -2.6478 -0.0014413 544.8270065321304 81.631 0.27811 75.455 75.324 75.602 -6.1757 21 15 2 0 0 0 0.22636 1 53668 53668 17.113 8.5196 1 8202200 36184 4734 24051 24521 42623 42623 0.10387479408132094 LPSGLHSLQL 10 Unmodified _LPSGLHSLQL_ 0 0 0 ENST00000416600.6_1_20:3847373-3847754:+|nuORF ENST00000416600.6_1_20:3847373-3847754:+|nuORF ENST00000416600.6_1_20:3847373-3847754:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.30859375 2 532.808574 1063.60259 0.31878 0.00016985 -0.9254 -0.00049306 -0.60662 -0.00032321 532.808682561816 60.972 0.5476 60.928 60.672 61.22 -0.043507 109 27 5 0 0 0 0.62068 1 33382 33382 10.074 2.1638 1 107280000 36185 13047 24052 24522 42624 42624 0.07333718368658992 LPSGMWRQP 9 Unmodified _LPSGMWRQP_ 0 0 0 nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 nc|ENSG00000214694|A8MVX0|ARHGEF33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.271484375 2 536.273844 1070.53313 -0.18102 -9.7078E-05 -1.8966 -0.0010171 -2.0777 -0.0011142 536.2720452045417 24.324 0.49321 24.324 24.099 24.592 0 77 28 5 0 0 0 0.41742 1 12420 12420 11.64 0.81637 1 6328900 36186 10502 24053 24523 42625 42625 0.0006893614825003169 LPSGPSPEIF 10 Unmodified _LPSGPSPEIF_ 0 0 0 ENSG00000185347|ENST00000392523|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENST00000460959.5_1_14:105957646-105957931:+|nuORF;ENST00000546536.5_1_14:105957646-105963882:+|nuORF ENSG00000185347|ENST00000392523|TEDC1;ENST00000546536.5_1_14:105957646-105963882:+|nuORF ENSG00000185347|ENST00000392523|TEDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.276123046875 2 522.274032 1042.53351 -0.38076 -0.00019886 4.4552 0.0023268 4.0744 0.002128 522.2762514948131 27.951 0.20189 27.951 27.783 27.985 0 12 9 2 0 0 0 0.52888 1 14427 14427 14.838 0.25658 1 843010 36187 9366;15108 24054 24524 42626 42626 0.013946343490943036 LPSGQGRSI 9 Unmodified _LPSGQGRSI_ 0 0 0 ENST00000369982.4_1_X:153247323-153247479:+|nuORF ENST00000369982.4_1_X:153247323-153247479:+|nuORF ENST00000369982.4_1_X:153247323-153247479:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7574768066406 2 457.756341 913.498129 -0.052198 -2.3894E-05 1.1919 0.00054559 1.1397 0.0005217 457.7569012052753 25.433 0.60315 22.55 22.322 22.925 -2.8831 69 33 3 0 0 0 0.10247 1 14088 14088 32.786 0.4802 1 25446000 36188 12319 24055 24525 42627 42627 0.03792016611953386 LPSGTSVTL 9 Unmodified _LPSGTSVTL_ 0 0 0 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2;chr6:30952531-30953058|136|24.74|0.42|5.88|-|ENST00000634371|SFTA2,SFTA2;ENSG00000196260|ENST00000359086|SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7475280761719 2 437.74765 873.480748 0.83453 0.00036531 -0.34511 -0.00015107 0.48942 0.00021424 437.74753812327515 51.239 0.32202 51.239 51.109 51.431 0 24 14 2 0 0 0 0.023164 1 28281 28281 60.39 1.7107 1 3079600 36189 116 24056 24526 42628 42628 0.03894676286279264 LPSGTSVTL 9 Unmodified _LPSGTSVTL_ 0 0 0 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2;chr6:30952531-30953058|136|24.74|0.42|5.88|-|ENST00000634371|SFTA2,SFTA2;ENSG00000196260|ENST00000359086|SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4883422851562 1 874.488024 873.480748 0.72892 0.00063743 -0.2449 -0.00021416 0.48402 0.00042327 874.487767712499 51.217 0.38152 51.217 51.05 51.431 0 29 17 2 0 0 0 0.0095811 1 28320 28320 81.613 21.539 1 7316700 36190 116 24056 24526 42629 42629 0.03894676286279264 LPSGTSVTL 9 Unmodified _LPSGTSVTL_ 0 0 0 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2;chr6:30952531-30953058|136|24.74|0.42|5.88|-|ENST00000634371|SFTA2,SFTA2;ENSG00000196260|ENST00000359086|SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.4877319335938 1 874.488024 873.480748 1.3227 0.0011567 -1.2364 -0.0010812 0.086241 7.5416E-05 874.4863847553481 59.104 0.62943 53.03 52.598 53.228 -6.0745 52 34 2 0 0 0 0.00856 2 37935 37808;37935 100.37 42.9 1 24927000 36191 116 24056 24526 42630;42631 42631 0.03894676286279264 LPSGTSVTL 9 Unmodified _LPSGTSVTL_ 0 0 0 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2;chr6:30952531-30953058|136|24.74|0.42|5.88|-|ENST00000634371|SFTA2,SFTA2;ENSG00000196260|ENST00000359086|SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 chr6:30931795-30952362|142|17.47|0.95|4.21|-|ENST00000634371|SFTA2,SFTA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7482604980469 2 437.74765 873.480748 1.4314 0.00062661 -0.43746 -0.0001915 0.99399 0.00043512 437.74757758870294 59.147 0.41429 53.073 52.756 53.171 -6.0745 36 22 2 0 0 0 0.012148 2 37984 37856;37984 74.423 7.0789 1 27807000 36192 116 24056 24526 42632;42633 42633 0.03894676286279264 LPSGVAWWL 9 Unmodified _LPSGVAWWL_ 0 0 0 REV__ENSG00000115596|ENST00000233948|WNT6 REV__ENSG00000115596|ENST00000233948|WNT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.779296875 2 514.781828 1027.5491 NaN NaN NaN NaN NaN NaN NaN 56.077 1 55.591 55.091 56.091 -0.48554 0 0 0 0.20498 1 30438 30438 30.225 1.1432 1 + 36193 18995 24057 24527 42634 42634 0.03642965656786146 LPSGVGPEY 9 Unmodified _LPSGVGPEY_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7323913574219 2 459.732 917.449448 1.0802 0.00049659 2.483 0.0011415 3.5631 0.0016381 459.7315330950307 50.773 0.20611 45.124 45.026 45.232 -5.649 13 12 2 0 0 0 0.06187 1 31892 31892 42.095 15.211 1 11814000 36194 2247 24058 24528 42635 42635 -0.012578967478020786 LPSHLISEIK 10 Unmodified _LPSHLISEIK_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8375854492188 2 568.837331 1135.66011 0.72226 0.00041085 -0.25316 -0.00014401 0.4691 0.00026684 568.837150843483 40.747 0.30399 40.443 40.297 40.601 -0.30304 31 14 3 0 0 0 0.11824 1 21525 21525 43.772 13.136 1 4652700 36195 5224 24059 24529 42636 42636 0.09770560574224874 LPSHLISEIK 10 Unmodified _LPSHLISEIK_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.837331 1135.66011 0.5466 0.00031092 0.38566 0.00021938 0.93225 0.0005303 568.8372651157911 40.463 0.16893 40.468 40.36 40.529 0.0050583 0.012117 0.00060527 NaN 43.772 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1179600 36196 5224 24059 24529 0.09770560574224874 LPSHLPSQFE 10 Unmodified _LPSHLPSQFE_ 0 0 0 REV__ENSG00000160741|ENST00000368633|CRTC2 REV__ENSG00000160741|ENST00000368633|CRTC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.2933349609375 2 577.795663 1153.57677 1.0957 0.00063308 0.85552 0.00049431 1.9512 0.0011274 577.7956883157759 61.268 0.44329 55.12 54.793 55.236 -6.1478 36 22 2 0 0 0 0.22149 1 39264 39264 20.454 1.1966 1 41731000 + 36197 21562 24060 24530 42637 42637 0.0061282412636956 LPSHPCPLSL 10 Unmodified _LPSHPCPLSL_ 0 0 0 ENST00000570069.5_1_16:1828418-1828808:+|nuORF ENST00000570069.5_1_16:1828418-1828808:+|nuORF ENST00000570069.5_1_16:1828418-1828808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2826538085938 2 532.283877 1062.5532 0.30554 0.00016264 -1.5991 -0.00085118 -1.2936 -0.00068855 532.7849300879058 61.864 0.20491 61.377 61.284 61.489 -0.48764 13 9 2 0 0 0 0.38092 1 33702 33702 22.736 5.6234 1 1275200 36198 15468 24061 24531 42638 42638 0.024426870882052754 LPSHPCPLSL 10 Unmodified _LPSHPCPLSL_ 0 0 0 ENST00000570069.5_1_16:1828418-1828808:+|nuORF ENST00000570069.5_1_16:1828418-1828808:+|nuORF ENST00000570069.5_1_16:1828418-1828808:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.283877 1062.5532 0.2982 0.00015873 -1.2614 -0.00067144 -0.96322 -0.00051271 532.2826730053125 61.423 0.14227 61.39 61.313 61.456 -0.032787 0.0066483 0.00016798 NaN 22.736 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1220100 36199 15468 24061 24531 0.024426870882052754 LPSHPLEL 8 Unmodified _LPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2579345703125 2 453.258185 904.501818 0.77343 0.00035056 -0.027974 -1.2679E-05 0.74546 0.00033788 453.2581205843181 49.813 0.31368 49.813 49.695 50.009 0 38 14 3 0 0 0 0.079151 2 27406 27406;27520 109.63 38.914 1 12473000 36200 4471 24062 24532 42639;42640 42639 0.04574686385797122 LPSHPLEL 8 Unmodified _LPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2587585449219 2 453.258185 904.501818 0.74127 0.00033599 0.13298 6.0273E-05 0.87425 0.00039626 453.25825180964637 50.147 0.36359 49.754 49.568 49.931 -0.3923 48 17 4 0 0 0 0.10909 1 26967 26967 97.075 26.359 1 16763000 36201 4471 24062 24532 42641 42641 0.04574686385797122 LPSHPLEL 8 Unmodified _LPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2585754394531 2 453.258185 904.501818 1.2513 0.00056716 -0.080162 -3.6334E-05 1.1711 0.00053083 453.2580732488704 55.467 0.52843 49.546 49.272 49.8 -5.9211 76 32 3 0 0 0 0.069468 2 35332 35205;35332 123.1 38.914 1 70151000 36202 4471 24062 24532 42642;42643 42643 0.04574686385797122 LPSHPLEL 8 Unmodified _LPSHPLEL_ 0 0 0 ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP ENSG00000132963|ENST00000380842|POMP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 453.258185 904.501818 1.4483 0.00065647 -0.61303 -0.00027786 0.8353 0.00037861 453.258153822394 49.828 0.18198 49.779 49.683 49.865 -0.048824 0.055943 -0.00052728 NaN 123.1 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 901150 36203 4471 24062 24532 0.04574686385797122 LPSHTKIKY 9 Unmodified _LPSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8817443847656 3 362.88172 1085.62333 -0.54192 -0.00019665 0.85978 0.000312 0.31786 0.00011535 362.8820494767874 19.212 0.18609 19.235 19.144 19.33 0.023106 29 10 4 0 0 0 0.047788 1 9675 9675 35.612 15.031 1 11002000 36204 6051 24063 24533 42644 42644 0.08394308748324875 LPSHTKIKY 9 Unmodified _LPSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8819885253906 3 362.88172 1085.62333 0.02536 9.2026E-06 0.7475 0.00027125 0.77286 0.00028046 362.88192741105877 19.359 0.2099 19.367 19.24 19.45 0.0078506 39 11 5 0 0 0 0.040683 1 9826 9826 39.213 14.331 1 16974000 36205 6051 24063 24533 42645 42645 0.08394308748324875 LPSHTKIKY 9 Unmodified _LPSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8819885253906 3 362.88172 1085.62333 1.8636 0.00067625 -0.46388 -0.00016833 1.3997 0.00050792 362.881461785221 21.61 0.46305 18.875 18.659 19.122 -2.7348 120 33 5 0 0 0 0.036857 2 11609 11498;11609 47.732 28.106 1 276530000 36206 6051 24063 24533 42646;42647 42647 0.08394308748324875 LPSHTKIKY 9 Unmodified _LPSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8196411132812 2 543.818941 1085.62333 1.0909 0.00059325 0.021801 1.1856E-05 1.1127 0.00060511 543.8188758967823 21.646 0.32303 18.911 18.711 19.034 -2.7348 55 21 3 0 0 0 0.0048194 2 11620 11512;11620 117.76 72.061 1 13501000 36207 6051 24063 24533 42648;42649 42649 0.08394308748324875 LPSHTKIKY 9 Unmodified _LPSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 362.88172 1085.62333 -0.47372 -0.00017191 1.468 0.00053272 0.9943 0.00036081 362.88193998258333 19.35 0.19924 19.35 19.282 19.482 0 0.032855 0.0006845 NaN 39.213 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2487300 36208 6051 24063 24533 0.08394308748324875 LPSHTLEY 8 Unmodified _LPSHTLEY_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2427978515625 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 26.37 1 26.37 25.87 26.87 0 0 0 0 0.95973 1 13553 13553 8.5933 0.43775 1 36209 6602 24064 24534 42650 42650 -0.004902078564896328 LPSHVVTML 9 Oxidation (M) _LPSHVVTM(Oxidation (M))L_ LPSHVVTM(1)L LPSHVVTM(61)L 0 0 1 ENSG00000062485|ENST00000351328|CS;ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7789916992188 2 506.778428 1011.5423 0.16178 8.1987E-05 0.15949 8.0826E-05 0.32127 0.00016281 506.7780293872187 44.336 0.22545 44.314 44.261 44.486 -0.022064 14 10 2 0 0 0 0.022193 1 23815 23815 61.357 15.337 1 6001800 36210 850 24065 24535 42651 42651 129 0.03699284713911766 LPSHVVTML 9 Unmodified _LPSHVVTML_ 0 0 0 ENSG00000062485|ENST00000351328|CS;ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7814025878906 2 498.78097 995.547388 0.067704 3.377E-05 -0.18442 -9.1987E-05 -0.11672 -5.8217E-05 498.78105652887103 55.41 0.21767 55.341 55.198 55.415 -0.068737 16 10 2 0 0 0 0.06187 1 30109 30109 42.095 9.7891 1 2207500 36211 850 24065 24536 42652 42652 0.049435885765319654 LPSHVVTML 9 Unmodified _LPSHVVTML_ 0 0 0 ENSG00000062485|ENST00000351328|CS;ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7808227539062 2 498.78097 995.547388 1.2022 0.00059966 -0.75457 -0.00037637 0.44767 0.00022329 498.78074381984425 61.44 0.79484 55.292 55.076 55.87 -6.1478 80 40 3 0 0 0 0.038285 2 39506 39506;39631 50.855 10.898 1 117650000 36212 850 24065 24536 42653;42654 42653 0.049435885765319654 LPSHVVTML 9 Unmodified _LPSHVVTML_ 0 0 0 ENSG00000062485|ENST00000351328|CS;ENST00000547912.1_1_12:56676173-56676410:-|nuORF;ENST00000547449.1_1_12:56676173-56676733:-|nuORF;ENST00000546621.5_1_12:56668606-56679804:-|nuORF ENSG00000062485|ENST00000351328|CS ENSG00000062485|ENST00000351328|CS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 498.78097 995.547388 0.029633 1.4781E-05 -0.44034 -0.00021963 -0.41071 -0.00020485 498.7809141210765 55.746 0.22779 55.268 55.132 55.36 -0.47798 -0.032174 0.00015505 NaN 50.855 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2107900 36213 850 24065 24536 0.049435885765319654 LPSHYYESF 9 Unmodified _LPSHYYESF_ 0 0 0 ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2 ENSG00000178078|ENST00000594605|STAP2 ENSG00000178078|ENST00000594605|STAP2 MSMS AL20221201_MKP_PDAC_01 4 571.7620239257812 2 571.761289 1141.50803 NaN NaN NaN NaN NaN NaN NaN 50.727 1 45.078 44.578 45.578 -5.649 0 0 0 0.14 1 31859 31859 37.974 12.575 1 36214 8729 24066 24537 42655 42655 -0.05706840173343153 LPSIFTLVI 9 Unmodified _LPSIFTLVI_ 0 0 0 ENSG00000212128|ENST00000390677|TAS2R13 ENSG00000212128|ENST00000390677|TAS2R13 ENSG00000212128|ENST00000390677|TAS2R13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3168029785156 2 501.815336 1001.61612 0.86853 0.00043584 -0.40924 -0.00020536 0.45929 0.00023048 501.8149800048218 102.02 0.18277 95.84 95.735 95.918 -6.1757 18 8 3 0 0 0 0.0094915 1 68463 68463 81.864 7.4677 1 22929000 36215 10413 24067 24538 42656 42656 0.11537576147907203 LPSIVNDKY 9 Unmodified _LPSIVNDKY_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.78662109375 2 524.787307 1047.56006 0.1121 5.8828E-05 -0.92255 -0.00048414 -0.81045 -0.00042531 524.7866063571273 46.054 0.30296 45.717 45.497 45.8 -0.33664 27 15 2 0 0 0 0.067618 1 24582 24582 51.63 24.001 1 5427500 36216 1302 24068 24539 42657 42657 0.038183232404207956 LPSIYPSTY 9 Unmodified _LPSIYPSTY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7685546875 2 520.768583 1039.52261 NaN NaN NaN NaN NaN NaN NaN 63.009 1 62.523 62.023 63.023 -0.48617 0 0 0 0.096036 1 34357 34357 44.407 21.259 1 36217 445 24069 24540 42658 42658 0.004432319748275404 LPSKAIKF 8 Unmodified _LPSKAIKF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2865905761719 2 452.286746 902.558939 0.45946 0.00020781 -0.41405 -0.00018727 0.045413 2.054E-05 452.2865782104029 34.613 0.12884 34.64 34.584 34.713 0.027401 7 5 2 0 0 0 0.40602 1 18271 18271 43.858 15.371 1 1710500 36218 1980 24070 24541 42659 42659 0.10376153662184606 LPSKEAITV 9 Unmodified _LPSKEAITV_ 0 0 0 ENSG00000198001|ENST00000613694|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2843933105469 2 479.2844 956.554247 0.94526 0.00045305 -0.80308 -0.0003849 0.14218 6.8143E-05 479.2842839448839 46.195 0.35686 46.195 45.994 46.351 0 44 16 3 0 0 0 0.047788 1 25267 25267 45.7 1.8413 1 13736000 36219 10036 24071 24542 42660 42660 0.07423224728745481 LPSKEAITV 9 Unmodified _LPSKEAITV_ 0 0 0 ENSG00000198001|ENST00000613694|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.2844 956.554247 0.64533 0.00030929 -1.477 -0.00070793 -0.83172 -0.00039863 479.2836606432114 46.38 0.24911 46.043 45.92 46.169 -0.33664 -0.075992 -0.00044545 NaN 45.7 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5372300 36220 10036 24071 24542 0.07423224728745481 LPSKGSVGNVA 11 Unmodified _LPSKGSVGNVA_ 0 0 0 REV__ENSG00000182580|ENST00000330394|EPHB3 REV__ENSG00000182580|ENST00000330394|EPHB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7897338867188 2 514.790381 1027.56621 1.0764 0.00055411 0.22199 0.00011428 1.2984 0.00066839 514.7901774612338 37.002 0.40282 32.718 32.571 32.974 -4.2835 50 24 3 0 0 0 0.10451 1 21798 21798 41.956 3.78 1 12330000 + 36221 23281 24072 24543 42661 42661 0.05352841471949432 LPSKPSSTL 9 Unmodified _LPSKPSSTL_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2697143554688 2 465.26875 928.522947 0.54581 0.00025395 0.34839 0.00016209 0.8942 0.00041604 465.2688321672707 32.786 0.32786 28.93 28.753 29.081 -3.8562 31 17 2 0 0 0 0.012668 2 18810 18676;18810 72.968 21.338 1 23451000 36222 1782 24073 24544 42662;42663 42663 0.05582651694669494 LPSKRRIPV 9 Unmodified _LPSKRRIPV_ 0 0 0 ENST00000589644.1_1_19:38799729-38806557:-|nuORF;ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B ENST00000589644.1_1_19:38799729-38806557:-|nuORF ENST00000589644.1_1_19:38799729-38806557:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.2871704101562 2 533.3482 1064.68185 0.20009 0.00010672 -1.8654 -0.00099491 -1.6653 -0.00088819 533.3468782174551 93.011 0.30982 86.835 86.671 86.981 -6.1757 47 19 3 0 0 0 0.21242 1 61422 61422 5.2307 0 1 35590000 36223 15610 24074 24545 42664 42664 0.1520941011344803 LPSLCHRWWNR 11 Unmodified _LPSLCHRWWNR_ 0 0 0 REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.87939453125 2 734.374955 1466.73536 -0.23972 -0.00017605 3.0049 0.0022068 2.7652 0.0020307 734.878639296447 45.35 0.093319 45.35 45.269 45.363 0 5 4 2 0 0 0 0.50515 1 24704 24704 16.149 2.2431 1 4854100 + 36224 27451 24075 24546 42665 42665 0.020658395536656826 LPSLCHRWWNR 11 Unmodified _LPSLCHRWWNR_ 0 0 0 REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 734.374955 1466.73536 -0.23972 -0.00017605 3.0049 0.0022068 2.7652 0.0020307 734.878639296447 45.35 0.093319 45.35 45.269 45.363 0 -0.0046285 -0.00030113 NaN 16.149 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4854100 + 36225 27451 24075 24546 0.020658395536656826 LPSLCHRWWNR 11 Unmodified _LPSLCHRWWNR_ 0 0 0 REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF REV__ENST00000468380.1_1_3:183165467-183165554:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 734.374955 1466.73536 -0.1223 -8.9816E-05 3.2348 0.0023756 3.1125 0.0022858 734.3773103232036 45.683 0.15677 45.359 45.253 45.41 -0.32425 0.0046285 3.6506E-05 NaN 16.149 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 24462000 + 36226 27451 24075 24546 0.020658395536656826 LPSLDGHLFY 10 Unmodified _LPSLDGHLFY_ 0 0 0 REV__nc|ENSG00000178177|Q8N3X6|LCORL REV__nc|ENSG00000178177|Q8N3X6|LCORL MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2988891601562 2 581.300581 1160.58661 0.73095 0.0004249 -3.0125 -0.0017512 -2.2815 -0.0013263 581.2985729025056 67.167 0.65639 60.991 60.58 61.236 -6.1757 49 36 2 0 0 0 0.081241 1 43732 43732 50.855 12.881 1 13561000 + 36227 29812 24076 24547 42666 42666 0.012740121317619924 LPSLGLPQY 9 Unmodified _LPSLGLPQY_ 0 0 0 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000486360.1_1_1:203032958-203044890:+|nuORF;ENST00000531657.1_1_11:70218293-70228249:+|nuORF;nc|ENSG00000139220|O75334-8|PPFIA2;ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2798156738281 2 494.279118 986.543683 0.92115 0.00045531 -0.75681 -0.00037407 0.16435 8.1233E-05 494.2786426241247 75.254 0.25406 74.777 74.63 74.884 -0.47714 17 11 2 0 0 0 0.052168 1 41185 41185 44.407 21.259 1 1384100 36228 8677;5559;16228 24077 24548 42667 42667 0.0498724207432133 LPSLGLPQY 9 Unmodified _LPSLGLPQY_ 0 0 0 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000486360.1_1_1:203032958-203044890:+|nuORF;ENST00000531657.1_1_11:70218293-70228249:+|nuORF;nc|ENSG00000139220|O75334-8|PPFIA2;ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2795104980469 2 494.279118 986.543683 0.47036 0.00023249 0.59889 0.00029602 1.0693 0.00052851 494.2792775626452 74.743 0.30405 74.789 74.616 74.92 0.045959 24 13 2 0 0 0 0.087258 1 41160 41160 36.044 5.8194 1 2605400 36229 8677;5559;16228 24077 24548 42668 42668 0.0498724207432133 LPSLGLPQY 9 Unmodified _LPSLGLPQY_ 0 0 0 nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2;ENST00000486360.1_1_1:203032958-203044890:+|nuORF;ENST00000531657.1_1_11:70218293-70228249:+|nuORF;nc|ENSG00000139220|O75334-8|PPFIA2;ENST00000526262.5_1_11:70189825-70228249:+|nuORF;ENST00000532504.5_1_11:70185286-70228249:+|nuORF;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000143847|O75335|PPFIA4;ENSG00000143847|ENST00000295706|PPFIA4;nc|ENSG00000143847|O75335-2|PPFIA4;nc|ENSG00000143847|O75335-1|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2 nc|ENSG00000177380|O75145-2|PPFIA3;nc|ENSG00000143847|O75335|PPFIA4;nc|ENSG00000139220|O75334-6|PPFIA2 nc|ENSG00000139220|O75334-6|PPFIA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2794799804688 2 494.279118 986.543683 0.67297 0.00033263 0.88567 0.00043777 1.5586 0.0007704 494.2794636556212 82.729 0.4673 76.553 76.323 76.79 -6.1757 54 26 3 0 0 0 0.013323 1 54385 54385 71.134 16.36 1 27440000 36230 8677;5559;16228 24077 24548 42669 42669 0.0498724207432133 LPSLHRTNTF 10 Unmodified _LPSLHRTNTF_ 0 0 0 REV__ENST00000276123.7_2_X:84502078-84502573:+|nuORF REV__ENST00000276123.7_2_X:84502078-84502573:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8276977539062 2 593.32238 1184.63021 -0.41748 -0.0002477 4.3358 0.0025725 3.9183 0.0023248 593.3245462406999 56.308 0.22988 56.239 56.036 56.266 -0.068737 15 11 2 0 0 0 0.22667 1 30630 30630 10.824 2.2306 1 6700100 + 36231 25174 24078 24549 42670 42670 0.04527621628903944 LPSLIGRHFY 10 Unmodified _LPSLIGRHFY_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5601196289062 3 401.560869 1201.66078 -0.34597 -0.00013893 -0.30586 -0.00012282 -0.65182 -0.00026175 401.5607506535102 55.58 0.42663 55.511 55.298 55.725 -0.068737 35 21 2 0 0 0 0.32072 1 30158 30158 34.222 11.447 1 6753400 36232 8108 24079 24550 42671 42671 0.06801400013955572 LPSLIGRHFY 10 Unmodified _LPSLIGRHFY_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5608520507812 3 401.560869 1201.66078 1.0422 0.0004185 -0.069713 -2.7994E-05 0.97247 0.0003905 401.5608341543745 83.241 0.55778 77.065 76.808 77.366 -6.1757 69 29 3 0 0 0 0.041224 1 54789 54789 53.317 25.083 1 20046000 36233 8108 24079 24550 42672 42672 0.06801400013955572 LPSLIGRHFY 10 Unmodified _LPSLIGRHFY_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000396503.7_1_16:11931646-11945380:-|nuORF ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MSMS AL20221201_MKP_PDAC_01 4 601.8357543945312 2 601.837665 1201.66078 NaN NaN NaN NaN NaN NaN NaN 83.26 1 77.084 76.584 77.584 -6.1757 0 0 0 0.01026 1 54746 54746 99.755 48.34 1 36234 8108 24079 24550 42673 42673 0.06801400013955572 LPSLLEFF 8 Unmodified _LPSLLEFF_ 0 0 0 ENST00000258341.4_1_1:183113498-183113675:+|nuORF ENST00000258341.4_1_1:183113498-183113675:+|nuORF ENST00000258341.4_1_1:183113498-183113675:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.5383911132812 1 965.534246 964.52697 -0.08848 -8.5431E-05 2.0242 0.0019544 1.9357 0.001869 965.5373872782466 52.23 0.27326 52.23 52.103 52.376 0 27 11 3 0 0 0 0.65867 1 28977 28977 20.871 1.4322 1 8615700 36235 11200 24080 24551 42674 42674 0.043287411883852656 LPSLLKVLL 9 Unmodified _LPSLLKVLL_ 0 0 0 ENST00000538524.1_1_12:6755846-6756568:-|nuORF;ENSG00000111644|ENST00000229243|ACRBP ENST00000538524.1_1_12:6755846-6756568:-|nuORF ENST00000538524.1_1_12:6755846-6756568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8486328125 2 498.346803 994.679054 1.7345 0.00086439 -0.38721 -0.00019296 1.3473 0.00067143 498.3465505105922 92.777 0.41214 92.807 92.599 93.011 0.030197 44 16 4 0 0 0 0.008678 2 51562 51562;51663 88.904 14.481 1 13814000 36236 2804 24081 24552 42675;42676 42675 0.18150141935961983 LPSLLKVLL 9 Unmodified _LPSLLKVLL_ 0 0 0 ENST00000538524.1_1_12:6755846-6756568:-|nuORF;ENSG00000111644|ENST00000229243|ACRBP ENST00000538524.1_1_12:6755846-6756568:-|nuORF ENST00000538524.1_1_12:6755846-6756568:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3471374511719 2 498.346803 994.679054 1.2776 0.00063671 0.27722 0.00013815 1.5549 0.00077486 498.3467773579876 100.29 0.17178 94.112 94.03 94.202 -6.1757 23 10 3 0 0 0 0.015445 1 67016 67016 68.081 2.8457 1 88787000 36237 2804 24081 24552 42677 42677 0.18150141935961983 LPSLLVAL 8 Unmodified _LPSLLVAL_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 825.544677734375 1 825.544417 824.537141 1.0974 0.00090599 0.19355 0.00015978 1.291 0.0010658 825.5444108755449 100.5 0.13331 94.321 94.241 94.374 -6.1757 12 7 2 0 0 0 0.15234 1 67193 67193 86.121 7.6766 1 39599000 + 36238 22194 24082 24553 42678 42678 0.11785348913622329 LPSLNEVDHSY 11 Unmodified _LPSLNEVDHSY_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MSMS AL20221201_MKP_PDAC_01 4 637.3046875 2 637.306592 1272.59863 NaN NaN NaN NaN NaN NaN NaN 82.205 1 76.03 75.53 76.53 -6.1757 0 0 0 0.51453 1 53990 53990 24.021 6.9077 1 36239 4286 24083 24554 42679 42679 -0.026764159157210088 LPSLNQNMNK 10 Unmodified _LPSLNQNMNK_ 0 0 0 ENSG00000230062|ENST00000565422|ANKRD66 ENSG00000230062|ENST00000565422|ANKRD66 ENSG00000230062|ENST00000565422|ANKRD66 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3342895507812 2 579.800423 1157.58629 0.69632 0.00040373 0.084437 4.8957E-05 0.78075 0.00045268 579.8006876194321 79.246 0.33887 79.301 79.13 79.468 0.054977 27 12 3 0 0 0 0.23489 1 43774 43774 8.7454 1.4562 1 5641800 36240 10611 24084 24555 42680 42680 0.013802691402361233 LPSLPFTIE 9 Unmodified _LPSLPFTIE_ 0 0 0 REV__ENSG00000137501|ENST00000359152|SYTL2 REV__ENSG00000137501|ENST00000359152|SYTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7861022949219 2 508.786776 1015.559 0.14673 7.4652E-05 -0.10594 -5.3901E-05 0.040785 2.0751E-05 508.7866613783794 92.006 0.4403 91.525 91.351 91.791 -0.48092 54 23 3 0 0 0 0.30562 1 50241 50241 16.942 1.0951 1 2670100 + 36241 20246 24085 24556 42681 42681 0.05184108871526405 LPSLQLLLL 9 Unmodified _LPSLQLLLL_ 0 0 0 ENSG00000153012|ENST00000382114|LGI2 ENSG00000153012|ENST00000382114|LGI2 ENSG00000153012|ENST00000382114|LGI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3376770019531 2 505.336436 1008.65832 1.4512 0.00073336 1.0141 0.00051248 2.4654 0.0012458 505.33694575681614 100.8 0.099892 94.623 94.57 94.67 -6.1757 15 6 3 0 0 0 0.14602 1 67500 67500 28.487 3.813 1 50050000 36242 6228 24086 24557 42682 42682 0.15433551556293423 LPSLRILYM 9 Unmodified _LPSLRILYM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.325439453125 2 553.325545 1104.63654 0.54894 0.00030374 -1.8764 -0.0010383 -1.3275 -0.00073452 553.3238427147111 98.671 0.23662 92.495 92.365 92.602 -6.1757 33 17 3 0 0 0 0.044296 1 65552 65552 47.594 24.858 1 61575000 36243 10128 24087 24558 42683 42683 0.08840423536048547 LPSLRILYM 9 Unmodified _LPSLRILYM_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.325545 1104.63654 1.6699 0.00092397 -1.3146 -0.00072738 0.3553 0.00019659 553.8263350708515 92.583 0.26058 92.613 92.494 92.755 0.030197 0.058691 0.00037967 NaN 47.594 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3718900 36244 10128 24087 24558 0.08840423536048547 LPSLRRLNL 9 Unmodified _LPSLRRLNL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000488221.5_1_17:18156710-18157010:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2334594726562 3 361.232864 1080.67676 1.5972 0.00057696 -0.050383 -1.82E-05 1.5468 0.00055876 361.2328690083632 83.266 0.81057 77.091 76.677 77.487 -6.1757 104 43 3 0 0 0 0.13231 1 54690 54690 29.841 4.8496 1 30873000 36245 8706 24088 24559 42684 42684 0.139651062508392 LPSLSAHEL 9 Unmodified _LPSLSAHEL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7665710449219 2 483.766374 965.518196 0.28383 0.00013731 0.15646 7.5688E-05 0.44028 0.00021299 483.76643425801717 50.366 0.42213 50.366 50.096 50.518 0 55 19 4 0 0 0 0.00856 2 27784 27677;27784 100.37 22.387 1 20473000 36246 3945 24089 24560 42685;42686 42686 0.03405767551907957 LPSLSAHEL 9 Unmodified _LPSLSAHEL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7676086425781 2 483.766374 965.518196 0.77819 0.00037646 0.11183 5.4099E-05 0.89002 0.00043056 483.76649520855784 50.779 0.42603 50.365 50.112 50.538 -0.41351 51 20 4 0 0 0 0.013323 2 27289 27289;27392 71.134 22.788 1 9346900 36247 3945 24089 24560 42687;42688 42687 0.03405767551907957 LPSLSAHEL 9 Unmodified _LPSLSAHEL_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7663269042969 2 483.766374 965.518196 0.7997 0.00038687 -0.12053 -5.8307E-05 0.67917 0.00032856 483.7662723202219 56.468 0.46893 50.491 50.25 50.719 -5.9769 60 26 3 0 0 0 0.0055767 2 35941 35941;36071 115.69 34.079 1 86994000 36248 3945 24089 24560 42689;42690 42689 0.03405767551907957 LPSLSCFSS 9 Carbamidomethyl (C) _LPSLSC(Carbamidomethyl (C))FSS_ LPSLSC(1)FSS LPSLSC(42)FSS 0 1 0 ENST00000591360.1_1_18:56204962-56205301:+|nuORF ENST00000591360.1_1_18:56204962-56205301:+|nuORF ENST00000591360.1_1_18:56204962-56205301:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2367553710938 2 499.236593 996.458632 1.347 0.00067249 -0.84729 -0.000423 0.49975 0.00024949 499.2361833661232 53.966 0.33576 48.1 47.947 48.283 -5.8653 34 19 2 0 0 0 0.06187 1 34248 34248 42.095 9.7891 1 23340000 36249 15703 24090 24561 42691 42691 1000 -0.03973871453774791 LPSLTMVPGH 10 Unmodified _LPSLTMVPGH_ 0 0 0 REV__ENST00000470882.5_1_1:161146557-161146803:-|nuORF REV__ENST00000470882.5_1_1:161146557-161146803:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 526.2823486328125 2 526.283877 1050.5532 NaN NaN NaN NaN NaN NaN NaN 92.481 1 86.305 85.805 86.805 -6.1757 0 0 0 0.61917 1 61161 61161 20.454 2.3186 1 + 36250 27484 24091 24562 42692 42692 0.029946870881985888 LPSLYMSIT 9 Oxidation (M) _LPSLYM(Oxidation (M))SIT_ LPSLYM(1)SIT LPSLYM(42)SIT 0 0 1 REV__ENST00000490276.5_1_1:155108359-155110646:+|nuORF REV__ENST00000490276.5_1_1:155108359-155110646:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1040.3896484375 1 1040.53326 1039.52598 0.32222 0.00033528 2.164 0.0022517 2.4862 0.002587 1041.539319057422 63.048 0.12262 62.562 62.48 62.603 -0.48617 7 5 2 0 0 0 0.06187 1 34336 34336 42.095 24.982 1 2177700 + 36251 22387 24092 24563 42693 42693 1850 0.00780158757152094 LPSMNPNAPIF 11 Unmodified _LPSMNPNAPIF_ 0 0 0 REV__ENST00000520623.5_1_8:27348689-27396319:+|nuORF REV__ENST00000520623.5_1_8:27348689-27396319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8087158203125 2 600.807716 1199.60088 0.72607 0.00043623 -0.35445 -0.00021296 0.37162 0.00022327 600.8077719014357 74.045 0.51889 73.569 73.275 73.794 -0.47588 41 23 3 0 0 0 0.58219 2 40590 40482;40590 12.241 1.4167 1 2327400 + 36252 19270 24093 24564 42694;42695 42695 0.00906341288373369 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ LPSM(1)PEPAL LPSM(60)PEPAL 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7499694824219 2 485.749336 969.484119 -0.47843 -0.0002324 1.3981 0.00067911 0.91964 0.00044671 485.7498574567698 48.666 0.44027 48.666 48.433 48.874 0 47 20 3 0 0 0 0.023164 1 26668 26668 60.39 28.273 1 14834000 36253 8844 24094 24565 42696 42696 1490 -0.00184396931365427 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ LPSM(1)PEPAL LPSM(71)PEPAL 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7492980957031 2 485.749336 969.484119 0.28764 0.00013972 -0.12412 -6.0289E-05 0.16353 7.9434E-05 485.74927072068374 49.073 0.36625 49.073 48.91 49.277 0 31 17 2 0 0 0 0.013472 1 26970 26970 70.716 30.267 1 15058000 36254 8844 24094 24565 42697 42697 1490 -0.00184396931365427 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ LPSM(1)PEPAL LPSM(64)PEPAL 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.4922485351562 1 970.491395 969.484119 0.19654 0.00019074 -0.3391 -0.0003291 -0.14257 -0.00013836 970.491345736385 49.073 0.22853 49.073 48.986 49.215 0 17 10 2 0 0 0 0.019303 1 26978 26978 64.236 35.749 1 2221100 36255 8844 24094 24565 42698 42698 1490 -0.00184396931365427 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ LPSM(1)PEPAL LPSM(48)PEPAL 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7499084472656 2 485.749336 969.484119 0.3288 0.00015971 0.4448 0.00021606 0.7736 0.00037578 485.74944644310415 56.015 0.36483 50.094 49.878 50.243 -5.9211 35 21 2 0 0 0 0.042911 1 35617 35617 48.346 12.302 1 18205000 36256 8844 24094 24565 42699 42699 1490 -0.00184396931365427 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ LPSM(1)PEPAL LPSM(51)PEPAL 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7499389648438 2 485.749336 969.484119 0.78815 0.00038285 -0.564 -0.00027396 0.22416 0.00010888 485.74935656503067 56.522 0.36674 50.545 50.32 50.687 -5.9769 28 20 2 0 0 0 0.038285 1 36052 36052 50.855 27.707 1 21283000 36257 8844 24094 24565 42700 42700 1490 -0.00184396931365427 LPSMPEPAL 9 Oxidation (M) _LPSM(Oxidation (M))PEPAL_ 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 485.749336 969.484119 0.81378 0.00039529 0.79508 0.00038621 1.6089 0.0007815 485.74950289438993 49.458 0.29549 49.066 48.943 49.238 -0.3923 -0.0036609 0.00067756 NaN 70.716 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2941700 36258 8844 24094 24565 1490 -0.00184396931365427 LPSMPEPAL 9 Unmodified _LPSMPEPAL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7520141601562 2 477.751879 953.489204 0.60345 0.0002883 0.21655 0.00010346 0.82 0.00039176 477.75196117080606 68.383 0.35057 67.903 67.725 68.076 -0.48071 26 15 2 0 0 0 0.03327 1 37329 37329 53.576 35.441 1 1790000 36259 8844 24094 24566 42701 42701 0.01059906931243404 LPSMPEPAL 9 Unmodified _LPSMPEPAL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7528076171875 2 477.751879 953.489204 0.85703 0.00040945 0.049693 2.3741E-05 0.90672 0.00043319 477.75185838958697 75.582 0.61376 69.406 69.084 69.698 -6.1757 56 32 2 0 0 0 0.0094915 2 49343 49343;49470 81.864 49.559 1 37970000 36260 8844 24094 24566 42702;42703 42702 0.01059906931243404 LPSNAPLE 8 Unmodified _LPSNAPLE_ 0 0 0 REV__ENSG00000120458|ENST00000374979|MSANTD2 REV__ENSG00000120458|ENST00000374979|MSANTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.4453735351562 1 840.44616 839.438883 0.36577 0.00030741 -0.59094 -0.00049666 -0.22517 -0.00018924 840.4456690672982 47.475 0.21845 47.475 47.405 47.623 0 16 9 2 0 0 0 0.28079 1 25999 25999 57.471 0 1 2765100 + 36261 19246 24095 24567 42704 42704 0.012741205977590653 LPSNDPVVM 9 Unmodified _LPSNDPVVM_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2477416992188 2 486.24696 970.479368 1.0183 0.00049515 -0.5001 -0.00024317 0.51821 0.00025198 486.24732527435054 57.565 0.36342 51.537 51.39 51.753 -6.0275 24 19 2 0 0 0 0.1773 1 36833 36833 25.399 5.9603 1 11263000 36262 10153 24096 24568 42705 42705 -0.0070528107411291785 LPSNDSSKF 9 Unmodified _LPSNDSSKF_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7457580566406 2 497.745639 993.476725 -0.26869 -0.00013374 0.85564 0.00042589 0.58694 0.00029215 497.7459353382052 25.76 0.4572 25.76 25.528 25.986 0 55 21 3 0 0 0 0.021948 2 13179 13179;13283 61.602 25.475 1 6030700 36263 2558 24097 24569 42706;42707 42706 -0.020274132074177942 LPSNDSSKF 9 Unmodified _LPSNDSSKF_ 0 0 0 ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF ENSG00000108312|ENST00000436088|UBTF ENSG00000108312|ENST00000436088|UBTF MSMS AL20221201_MKP_PDAC_01 4 497.7463073730469 2 497.745639 993.476725 NaN NaN NaN NaN NaN NaN NaN 29.251 1 25.949 25.449 26.449 -3.3016 0 0 0 0.091025 1 16413 16413 45.7 15.475 1 36264 2558 24097 24569 42708 42708 -0.020274132074177942 LPSNERAVQTL 11 Unmodified _LPSNERAVQTL_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3377685546875 2 614.338227 1226.6619 -0.069595 -4.2755E-05 -0.62979 -0.0003869 -0.69938 -0.00042966 614.3378705345534 35.367 0.13641 35.367 35.285 35.421 0 9 6 2 0 0 0 0.055321 1 18686 18686 49.742 7.7864 1 5092000 36265 3227 24098 24570 42709 42709 0.05763569592181739 LPSNRPQQQ 9 Unmodified _LPSNRPQQQ_ 0 0 0 ENST00000490728.5_1_2:131799319-131803759:+|nuORF;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4;ENSG00000136002|ENST00000409359|ARHGEF4 ENST00000490728.5_1_2:131799319-131803759:+|nuORF ENST00000490728.5_1_2:131799319-131803759:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2822875976562 2 534.283254 1066.55196 0.73851 0.00039457 -0.21135 -0.00011292 0.52716 0.00028165 534.2829456653114 39.009 0.58524 34.558 34.361 34.946 -4.4509 55 36 2 0 0 0 0.19127 1 23295 23295 24.021 3.5669 1 33740000 36266 4773 24099 24571 42710 42710 0.021341890436588073 LPSNSIKI 8 Unmodified _LPSNSIKI_ 0 0 0 nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523488.5_1_8:3008913-3253839:-|nuORF;ENST00000523387.5_1_8:2986336-3141840:-|nuORF nc|ENSG00000183117|Q96PZ7-4|CSMD1 nc|ENSG00000183117|Q96PZ7-4|CSMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2659912109375 2 436.26601 870.517468 0.65751 0.00028685 0.67156 0.00029298 1.3291 0.00057983 436.2662001533051 44.927 0.32796 40.075 39.905 40.233 -4.852 30 21 2 0 0 0 0.34916 1 27462 27462 49.933 3.912 1 12944000 36267 9120 24100 24572 42711 42711 0.07702972902836791 LPSNVLPSL 9 Unmodified _LPSNVLPSL_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1;ENST00000497242.1_1_X:153631168-153631932:-|nuORF ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 939.550537109375 1 939.550959 938.543683 0.67012 0.00062961 -0.71028 -0.00066735 -0.040164 -3.7737E-05 939.549896828222 75.247 0.25958 74.77 74.605 74.864 -0.47714 18 11 2 0 0 0 0.039985 1 41153 41153 49.933 1.5872 1 1565900 36268 478 24101 24573 42712 42712 0.07195242074340058 LPSNVLPSL 9 Unmodified _LPSNVLPSL_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1;ENST00000497242.1_1_X:153631168-153631932:-|nuORF ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.5486450195312 1 939.550959 938.543683 0.28573 0.00026846 -0.19611 -0.00018426 0.08962 8.4202E-05 939.5512765792779 82.626 0.40664 76.45 76.27 76.677 -6.1757 38 23 2 0 0 0 0.0082548 2 54224 54224;54355 96.367 29.91 1 14224000 36269 478 24101 24573 42713;42714 42713 0.07195242074340058 LPSNVLPSL 9 Unmodified _LPSNVLPSL_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1;ENST00000497242.1_1_X:153631168-153631932:-|nuORF ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2792053222656 2 470.279118 938.543683 0.517 0.00024313 -0.022313 -1.0493E-05 0.49468 0.00023264 470.278873575743 82.628 0.46349 76.452 76.197 76.661 -6.1757 38 26 2 0 0 0 0.032796 1 54258 54258 53.833 1.5644 1 11646000 36270 478 24101 24573 42715 42715 0.07195242074340058 LPSPATPRF 9 Unmodified _LPSPATPRF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2776489257812 2 493.276909 984.539266 1.1561 0.00057028 -0.27329 -0.00013481 0.88281 0.00043547 493.2769113665144 46.343 0.327 46.309 46.183 46.51 -0.033417 22 15 2 0 0 0 0.11784 1 24929 24929 31.268 2.7815 1 2243500 36271 3677 24102 24574 42716 42716 0.04637777651419128 LPSPHPVRY 9 Unmodified _LPSPHPVRY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.8661804199219 3 355.866181 1064.57671 0.57503 0.00020463 -0.16303 -5.8016E-05 0.412 0.00014662 355.8661289277195 28.972 0.41704 28.91 28.644 29.061 -0.062159 32 17 2 0 0 0 0.15471 1 15011 15011 26.021 13.148 1 12966000 36272 5105 24103 24575 42717 42717 0.04700868917052503 LPSPHPVRY 9 Unmodified _LPSPHPVRY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8668823242188 3 355.866181 1064.57671 1.3802 0.00049117 1.0874 0.00038697 2.4676 0.00087814 355.8662972216998 32.683 0.70747 28.827 28.494 29.202 -3.8562 125 39 6 0 0 0 0.1685 3 18656 18541;18656;18786 24.882 12.009 1 92678000 36273 5105 24103 24575 42718;42719;42720 42719 0.04700868917052503 LPSPHPVRY 9 Unmodified _LPSPHPVRY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 355.866181 1064.57671 0.006279 2.2345E-06 -0.16365 -5.8239E-05 -0.15737 -5.6004E-05 355.8661001844463 28.821 0.27924 28.851 28.73 29.009 0.030104 -0.011771 -0.0005863 NaN 26.021 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2561900 36274 5105 24103 24575 0.04700868917052503 LPSPIVQDVL 10 Unmodified _LPSPIVQDVL_ 0 0 0 ENSG00000182957|ENST00000382108|SPATA13;ENST00000466831.2_1_13:24796959-24798912:+|nuORF ENSG00000182957|ENST00000382108|SPATA13 ENSG00000182957|ENST00000382108|SPATA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.8191528320312 2 540.818607 1079.62266 0.6809 0.00036825 0.044144 2.3874E-05 0.72505 0.00039212 540.8184347984094 80.779 0.22852 80.286 80.152 80.38 -0.49247 16 9 2 0 0 0 0.65471 1 44238 44238 13.042 6.8367 1 538710 36275 9104 24104 24576 42721 42721 0.08603469308627609 LPSPLRREKL 10 Unmodified _LPSPLRREKL_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5875244140625 3 403.587307 1207.74009 -0.20711 -8.3587E-05 0.67001 0.00027041 0.46291 0.00018682 403.5875885564292 29.767 0.33457 29.797 29.611 29.946 0.030106 28 13 3 0 0 0 0.45406 1 15525 15525 18.721 3.7641 1 4859100 36276 1876 24105 24577 42722 42722 0.14453046968083072 LPSPLRREKL 10 Unmodified _LPSPLRREKL_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.9215393066406 3 403.587307 1207.74009 1.4784 0.00059666 -0.21445 -8.6551E-05 1.2639 0.0005101 403.58722442960584 34.002 0.43399 30.017 29.765 30.199 -3.9853 60 23 3 0 0 0 0.48629 2 19515 19515;19638 17.049 1.5101 1 16835000 36277 1876 24105 24577 42723;42724 42723 0.14453046968083072 LPSPPSPSW 9 Unmodified _LPSPPSPSW_ 0 0 0 REV__ENSG00000188368|ENST00000341747|PRR19 REV__ENSG00000188368|ENST00000341747|PRR19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2491760253906 2 484.247818 966.481082 0.80219 0.00038846 1.2175 0.00058956 2.0197 0.00097801 484.2481963182392 67.42 0.55467 61.244 60.962 61.517 -6.1757 63 30 3 0 0 0 0.0082281 2 43946 43824;43946 104.8 21.689 1 15762000 + 36278 23709 24106 24578 42725;42726 42726 -0.0034990399386742865 LPSPQDLM 8 Unmodified _LPSPQDLM_ 0 0 0 nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.72900390625 2 450.728403 899.442254 0.60649 0.00027336 1.2126 0.00054655 1.8191 0.00081991 450.7288355881125 73.481 0.31705 73.005 72.849 73.166 -0.47588 27 13 3 0 0 0 0.80722 1 40272 40272 2.3027 0.24298 1 1450200 36279 6036 24107 24579 42727 42727 -0.01148952619882948 LPSPSDTTSVY 11 Unmodified _LPSPSDTTSVY_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000580540.1_1_17:17720525-17721213:-|nuORF ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7824096679688 2 583.782418 1165.55028 -0.094868 -5.5382E-05 2.0644 0.0012052 1.9696 0.0011498 583.7821780737099 45.334 0.29046 45.334 45.17 45.46 0 21 15 2 0 0 0 0.012451 1 24676 24676 65.235 15.302 1 12314000 36280 1078 24108 24580 42728 42728 -0.0258690955563452 LPSPSPPAF 9 Unmodified _LPSPSPPAF_ 0 0 0 ENSG00000069399|ENST00000164227|BCL3 ENSG00000069399|ENST00000164227|BCL3 ENSG00000069399|ENST00000164227|BCL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7450256347656 2 456.744911 911.475269 0.21043 9.6112E-05 -0.7489 -0.00034205 -0.53847 -0.00024594 456.7449754189311 59.642 0.30448 59.151 58.968 59.272 -0.49079 21 14 2 0 0 0 0.30562 1 32410 32410 16.942 0 1 1293400 36281 1003 24109 24581 42729 42729 0.01598997494465948 LPSPSPPAF 9 Unmodified _LPSPSPPAF_ 0 0 0 ENSG00000069399|ENST00000164227|BCL3 ENSG00000069399|ENST00000164227|BCL3 ENSG00000069399|ENST00000164227|BCL3 MSMS AL20221201_MKP_PDAC_01 4 456.7439270019531 2 456.744911 911.475269 NaN NaN NaN NaN NaN NaN NaN 66.764 1 60.589 60.089 61.089 -6.1757 0 0 0 0.026323 1 43438 43438 70.716 17.14 1 36282 1003 24109 24581 42730 42730 0.01598997494465948 LPSPSPRISL 10 Unmodified _LPSPSPRISL_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.81591796875 2 533.816399 1065.61824 0.17567 9.3776E-05 -0.53491 -0.00028554 -0.35923 -0.00019177 533.8160866736437 54.511 0.2238 54.444 54.319 54.542 -0.066936 26 10 3 0 0 0 0.015688 1 29583 29583 79.596 19.522 1 11088000 36283 6726 24110 24582 42731 42731 0.08806004885695984 LPSPSSYVVL 10 Unmodified _LPSPSSYVVL_ 0 0 0 nc|ENSG00000166484|Q13164-4|MAPK7;ENST00000570306.5_1_17:19283765-19285121:+|nuORF nc|ENSG00000166484|Q13164-4|MAPK7 nc|ENSG00000166484|Q13164-4|MAPK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2981567382812 2 531.297507 1060.58046 0.17564 9.3318E-05 0.41049 0.00021809 0.58614 0.00031141 531.2977542047229 70.251 0.39545 70.251 70.122 70.518 0 27 17 2 0 0 0 0.69377 1 39240 39240 3.5965 0 1 958460 36284 15475 24111 24583 42732 42732 0.05259493900234702 LPSPSWTRRS 10 Unmodified _LPSPSWTRRS_ 0 0 0 ENST00000568542.5_1_16:2255373-2256424:+|nuORF ENST00000568542.5_1_16:2255373-2256424:+|nuORF ENST00000568542.5_1_16:2255373-2256424:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 593.8201904296875 2 593.820004 1185.62546 NaN NaN NaN NaN NaN NaN NaN 77.068 1 70.892 70.392 71.392 -6.1757 0 0 0 0.61997 1 50404 50404 20.415 0 1 36285 15453 24112 24584 42733 42733 0.04006737486133716 LPSPTDSNFY 10 Unmodified _LPSPTDSNFY_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.762451171875 2 570.764029 1139.5135 1.1321 0.00064616 -1.7915 -0.0010225 -0.6594 -0.00037636 570.7631914623307 63.029 0.5304 56.853 56.544 57.075 -6.1757 29 27 2 0 0 0 0.10424 1 40779 40779 45.7 20.709 1 9316700 36286 5788 24113 24585 42734 42734 -0.05067161381521146 LPSPTVGPSL 10 Unmodified _LPSPTVGPSL_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.276123046875 2 484.276575 966.538597 0.68387 0.00033118 0.77496 0.00037529 1.4588 0.00070647 484.2769092799117 66.364 0.21851 60.189 60.096 60.315 -6.1757 21 11 2 0 0 0 0.01132 1 43241 43241 85.272 0 1 9719300 36287 9016 24114 24586 42735 42735 0.05398938211715176 LPSPVFVL 8 Unmodified _LPSPVFVL_ 0 0 0 ENST00000399231.7_1_15:52603151-52603319:-|nuORF ENST00000399231.7_1_15:52603151-52603319:-|nuORF ENST00000399231.7_1_15:52603151-52603319:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 436.2850036621094 2 436.268022 870.521491 NaN NaN NaN NaN NaN NaN NaN 102.43 1 96.254 95.754 96.754 -6.1757 0 0 0 0.95973 1 68738 68738 8.5933 0 1 36288 12863 24115 24587 42736 42736 0.0810506239655524 LPSPVPPEAL 10 Unmodified _LPSPVPPEAL_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2929077148438 2 510.292225 1018.5699 0.57067 0.00029121 0.29795 0.00015204 0.86862 0.00044325 510.2924349459408 57.048 0.39082 57.048 56.786 57.177 0 22 16 2 0 0 0 0.60623 1 31753 31753 10.824 0 1 896270 + 36289 22217 24116 24588 42737 42737 0.06135511245793168 LPSPVTAQKY 10 Unmodified _LPSPVTAQKY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.3085327148438 2 552.308406 1102.60226 0.68491 0.00037828 -0.17864 -9.8662E-05 0.50627 0.00027962 552.3082271149276 36.914 0.44852 36.914 36.69 37.138 0 39 21 2 0 0 0 3.3984E-08 2 19534 19534;19697 148.27 75.3 1 42003000 36290 7651 24117 24589 42738;42739 42738 0.055062986488110255 LPSPVTAQKY 10 Unmodified _LPSPVTAQKY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.30859375 2 552.308406 1102.60226 -0.070869 -3.9142E-05 -1.141 -0.00063017 -1.2119 -0.00066932 552.3087062676047 37.25 0.5677 36.979 36.686 37.254 -0.27133 114 23 6 0 0 0 0.0015532 3 19584 19480;19584;19687 110.79 53.216 1 187420000 36291 7651 24117 24589 42740;42741;42742 42741 0.055062986488110255 LPSPVTAQKY 10 Unmodified _LPSPVTAQKY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3089599609375 2 552.308406 1102.60226 -0.16937 -9.3543E-05 -0.76636 -0.00042327 -0.93573 -0.00051681 552.3089935653625 36.925 0.48894 36.946 36.706 37.195 0.021545 90 22 5 0 0 0 0.00089362 2 19672 19566;19672 114.19 47.73 1 34364000 36292 7651 24117 24589 42743;42744 42744 0.055062986488110255 LPSPVTAQKY 10 Unmodified _LPSPVTAQKY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3082275390625 2 552.308406 1102.60226 0.70187 0.00038765 -0.56296 -0.00031093 0.13892 7.6724E-05 552.3080247882577 42.23 0.86889 37.546 37.125 37.994 -4.6846 200 56 5 0 0 0 0.0055438 3 25483 25342;25483;25612 96.936 60.429 1 1223900000 36293 7651 24117 24589 42745;42746;42747 42746 0.055062986488110255 LPSQDVRLK 9 Unmodified _LPSQDVRLK_ 0 0 0 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 ENSG00000180974|ENST00000641726|OR52E4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2911987304688 2 528.314023 1054.61349 0.0097491 5.1506E-06 0.96426 0.00050943 0.974 0.00051458 528.816052353729 38.05 0.24863 38.067 37.942 38.191 0.01704 24 11 3 0 0 0 0.20883 1 20163 20163 4.3292 0 1 1785100 36294 8937 24118 24590 42748 42748 0.08837120742941806 LPSQEAPSF 9 Unmodified _LPSQEAPSF_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000589582.5_1_17:74470614-74477615:-|nuORF;ENST00000587640.1_1_17:74472910-74477606:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2434387207031 2 488.242732 974.470912 0.76018 0.00037115 -0.046377 -2.2643E-05 0.7138 0.00034851 488.2427315537725 46.351 0.37877 46.351 46.186 46.565 0 37 17 3 0 0 0 0.018301 2 25297 25297;25409 65.235 15.302 1 4671000 36295 4158 24119 24591 42749;42750 42749 -0.017345117190984638 LPSQEVQAL 9 Unmodified _LPSQEVQAL_ 0 0 0 ENSG00000173992|ENST00000533244|CCS;ENST00000530384.5_1_11:66360639-66366729:+|nuORF;ENST00000526058.1_1_11:66360677-66366729:+|nuORF ENSG00000173992|ENST00000533244|CCS ENSG00000173992|ENST00000533244|CCS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7723388671875 2 492.771657 983.528761 0.14728 7.2575E-05 -0.10501 -5.1747E-05 0.042267 2.0828E-05 492.7716880237471 46.876 0.28373 46.876 46.678 46.962 0 24 13 2 0 0 0 0.018301 1 25591 25591 65.235 19.535 1 4789900 36296 8382 24120 24592 42751 42751 0.036337502063247484 LPSQGLNFK 9 Unmodified _LPSQGLNFK_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2589416503906 2 502.282192 1002.54983 0.91676 0.00046047 -1.8655 -0.00093703 -0.94878 -0.00047655 502.2810800075172 54.015 0.21195 54.015 53.899 54.111 0 16 9 3 0 0 0 0.17331 1 29976 29976 17.113 0 1 1378300 36297 1168 24121 24593 42752 42752 0.04865760305847289 LPSQGLNFK 9 Unmodified _LPSQGLNFK_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.282192 1002.54983 -0.24905 -0.00012509 -5.6355 -0.0028306 -5.8845 -0.0029557 502.2793710791047 54.784 0.15793 54.318 54.242 54.4 -0.46664 0.15123 -0.0032649 NaN 17.113 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2900100 36298 1168 24121 24593 0.04865760305847289 LPSQITILTTY 11 Unmodified _LPSQITILTTY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.3558959960938 2 625.355554 1248.69655 0.43092 0.00026948 -0.59818 -0.00037407 -0.16726 -0.0001046 625.3552664199999 82.924 0.35892 82.426 82.224 82.583 -0.49751 39 15 3 0 0 0 0.028752 2 45345 45345;45450 55.503 42.46 1 4711100 36299 3760 24122 24594 42753;42754 42753 0.08215392680290279 LPSQITILTTY 11 Unmodified _LPSQITILTTY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3561401367188 2 625.355554 1248.69655 1.5323 0.0009582 -0.93278 -0.00058332 0.59947 0.00037488 625.3548875808536 82.333 0.49387 82.395 82.197 82.691 0.062004 70 18 5 0 0 0 9.0972E-05 2 45484 45484;45587 93.166 68.175 1 128680000 36300 3760 24122 24594 42755;42756 42755 0.08215392680290279 LPSQITILTTY 11 Unmodified _LPSQITILTTY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3558959960938 2 625.355554 1248.69655 0.84695 0.00052965 0.13525 8.4582E-05 0.98221 0.00061423 625.3555722790326 90.934 0.96552 84.759 84.324 85.29 -6.1757 203 56 5 0 0 0 9.0972E-05 5 60338 59822;59945;60076;60209;60338 93.166 71.629 1 326430000 36301 3760 24122 24594 42757;42758;42759;42760;42761 42761 0.08215392680290279 LPSQKTASL 9 Unmodified _LPSQKTASL_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.77392578125 2 472.7742 943.533846 -0.3996 -0.00018892 -0.11277 -5.3316E-05 -0.51238 -0.00024224 472.77414263574997 27.102 0.22049 27.102 27.012 27.232 0 13 10 2 0 0 0 0.11784 1 13973 13973 31.268 31.268 1 1933600 36302 6700 24123 24595 42762 42762 0.059820540689429436 LPSQLAHRL 9 Unmodified _LPSQLAHRL_ 0 0 0 nc|ENSG00000133119|P40938-2|RFC3;ENSG00000133119|ENST00000380071|RFC3 nc|ENSG00000133119|P40938-2|RFC3 nc|ENSG00000133119|P40938-2|RFC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8081665039062 2 517.808908 1033.60326 0.44971 0.00023286 -0.35108 -0.00018179 0.098627 5.107E-05 517.8085643040939 38.521 0.29327 34.152 33.98 34.273 -4.3689 29 18 2 0 0 0 0.036857 1 22748 22748 51.63 27.609 1 13423000 36303 4492 24124 24596 42763 42763 0.08780557808381673 LPSQRGLCERL 11 Unmodified _LPSQRGLCERL_ 0 0 0 REV__nc|ENSG00000275111|Q9BSG1-3|ZNF2 REV__nc|ENSG00000275111|Q9BSG1-3|ZNF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3472900390625 2 636.348071 1270.68159 0.89171 0.00056744 -0.70156 -0.00044643 0.19015 0.000121 636.3476473026853 90.931 0.43221 84.755 84.543 84.975 -6.1757 47 25 2 0 0 0 0.056311 2 59996 59996;60127 49.527 14.595 1 12842000 + 36304 24648 24125 24597 42764;42765 42764 0.057076223313060837 LPSQSRNKETL 11 Unmodified _LPSQSRNKETL_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.9018249511719 3 424.901731 1271.68336 -0.48428 -0.00020577 0.61063 0.00025946 0.12635 5.3686E-05 424.901993212047 19.021 0.15909 19.021 18.951 19.11 0 21 10 3 0 0 0 0.721 1 9483 9483 0.92553 0 1 816250 36305 1150;16051 24126 24598 42766 42766 0.058389546208900356 LPSQSRNKETL 11 Unmodified _LPSQSRNKETL_ 0 0 0 nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.9026489257812 3 424.901731 1271.68336 1.391 0.00059103 0.29427 0.00012503 1.6852 0.00071606 424.9017517066207 20.861 0.30325 18.168 18.036 18.339 -2.693 35 17 3 0 0 0 0.24981 1 11106 11106 24.229 13.33 1 5703000 36306 1150;16051 24126 24598 42767 42767 0.058389546208900356 LPSQVTEMF 9 Oxidation (M) _LPSQVTEM(Oxidation (M))F_ LPSQVTEM(1)F LPSQVTEM(63)F 0 0 1 ENST00000471851.1_1_7:5266712-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2 ENST00000471851.1_1_7:5266712-5270575:+|nuORF ENST00000471851.1_1_7:5266712-5270575:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.257080078125 2 534.257525 1066.5005 0.88825 0.00047456 0.19539 0.00010439 1.0836 0.00057894 534.2576665755716 59.965 0.4768 53.85 53.587 54.064 -6.1147 42 26 2 0 0 0 0.020973 1 38465 38465 62.573 16.873 1 43566000 36307 6553 24127 24599 42768 42768 1146 -0.030093157652800073 LPSQVTEMF 9 Unmodified _LPSQVTEMF_ 0 0 0 ENST00000471851.1_1_7:5266712-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2 ENST00000471851.1_1_7:5266712-5270575:+|nuORF ENST00000471851.1_1_7:5266712-5270575:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2600708007812 2 526.260068 1050.50558 1.3669 0.00071936 -0.41243 -0.00021705 0.95449 0.00050231 526.2598376420145 79.646 0.6705 73.471 73.04 73.711 -6.1757 106 39 4 0 0 0 0.08691 2 52240 52103;52240 36.127 1.7253 1 70149000 36308 6553 24127 24600 42769;42770 42770 -0.01765011902648439 LPSRAAALSF 10 Unmodified _LPSRAAALSF_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7951049804688 2 516.795466 1031.57638 -0.10158 -5.2495E-05 -0.40843 -0.00021107 -0.51001 -0.00026357 516.7951527320909 51.425 0.23349 51.371 51.246 51.479 -0.053871 18 11 2 0 0 0 0.13008 1 27841 27841 42.312 4.1369 1 2834600 36309 2315 24128 24601 42771 42771 0.061854491971644165 LPSRGILKY 9 Unmodified _LPSRGILKY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.8209228515625 2 523.821484 1045.62842 -0.31327 -0.0001641 -0.65831 -0.00034484 -0.97158 -0.00050894 523.8213473016823 36.618 0.3175 36.64 36.474 36.791 0.021545 21 14 2 0 0 0 0.037253 1 19404 19404 51.415 3.6665 1 4540400 36310 5706 24129 24602 42772 42772 0.1074261261094307 LPSRGILKY 9 Unmodified _LPSRGILKY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8214721679688 2 523.821484 1045.62842 0.87384 0.00045774 -0.32094 -0.00016811 0.55291 0.00028962 523.8212492669079 41.143 0.36401 36.535 36.339 36.703 -4.6079 51 22 3 0 0 0 0.033587 1 24615 24615 53.404 13.454 1 23618000 36311 5706 24129 24602 42773 42773 0.1074261261094307 LPSRGTETF 9 Unmodified _LPSRGTETF_ 0 0 0 ENST00000295974.12_1_4:41145041-41145116:-|nuORF ENST00000295974.12_1_4:41145041-41145116:-|nuORF ENST00000295974.12_1_4:41145041-41145116:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.2620849609375 2 504.261456 1006.50836 NaN NaN NaN NaN NaN NaN NaN 34.481 1 30.386 29.886 30.886 -4.0951 0 0 0 0.030047 1 19886 19886 66.457 8.9853 1 36312 11502 24130 24603 42774 42774 0.005365795465195333 LPSRKLVAL 9 Unmodified _LPSRKLVAL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8311157226562 2 498.831852 995.649151 0.28945 0.00014439 0.045842 2.2868E-05 0.3353 0.00016726 498.8318826519666 39.063 0.33601 39.074 38.86 39.196 0.011452 43 15 4 0 0 0 0.044296 2 20732 20732;20834 47.594 14.809 1 17431000 36313 4089 24131 24604 42775;42776 42775 0.15115202990614307 LPSRKLVAL 9 Unmodified _LPSRKLVAL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.8325805664062 2 498.831852 995.649151 0.7436 0.00037093 0.49488 0.00024686 1.2385 0.0006178 498.83203143038605 43.731 0.4804 38.966 38.74 39.22 -4.7648 77 29 3 0 0 0 0.044296 1 26621 26621 47.594 14.809 1 67532000 36314 4089 24131 24604 42777 42777 0.15115202990614307 LPSRLGLLL 9 Unmodified _LPSRLGLLL_ 0 0 0 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7787475585938 2 491.326402 980.638252 0.78333 0.00038487 -0.42664 -0.00020962 0.35669 0.00017525 491.3261457449392 68.228 0.21004 68.253 68.206 68.416 0.025146 15 10 2 0 0 0 0.20883 1 37570 37570 4.897 1.3005 1 1271600 36315 3142 24132 24605 42778 42778 0.1471580061631812 LPSRPADNY 9 Unmodified _LPSRPADNY_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-6|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF nc|ENSG00000182149|P53990-2|IST1 nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7584838867188 2 516.759081 1031.50361 -0.23606 -0.00012199 -1.055 -0.00054519 -1.2911 -0.00066718 516.7586216822455 25.389 0.20577 25.389 25.26 25.466 0 17 9 2 0 0 0 0.098164 1 12995 12995 33.445 12.991 1 1400900 36316 9022 24133 24606 42779 42779 -0.01088304596260059 LPSRRGEQL 9 Unmodified _LPSRRGEQL_ 0 0 0 ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000272391|A8CG34|POM121C;ENSG00000272391|ENST00000615331|POM121C;nc|ENSG00000205578|A6NF01|POM121B ENSG00000196313|ENST00000434423|POM121 ENSG00000196313|ENST00000434423|POM121 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5368347167969 3 352.536724 1054.58834 0.87395 0.0003081 -0.58749 -0.00020711 0.28646 0.00010099 352.5364598595875 22.906 0.29026 20.127 20.015 20.305 -2.7784 32 17 2 0 0 0 0.10734 1 12389 12389 23.79 2.1996 1 5989100 36317 9796 24134 24607 42780 42780 0.06323065940387096 LPSRRSRESPS 11 Unmodified _LPSRRSRESPS_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3463134765625 2 636.344375 1270.6742 1.3246 0.00084293 0.42996 0.0002736 1.7546 0.0011165 636.3460113672571 82.342 0.33969 82.404 82.27 82.61 0.062004 23 12 3 0 0 0 0.10451 1 45548 45548 41.956 5.4494 1 7485900 + 36318 24360 24135 24608 42781 42781 0.04968606055240343 LPSRTTPLP 9 Unmodified _LPSRTTPLP_ 0 0 0 REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.7837524414062 2 491.290017 980.565481 1.3692 0.00067266 -1.7952 -0.00088197 -0.42603 -0.0002093 491.2889492716465 58.553 0.48141 52.478 52.238 52.719 -6.0745 43 26 2 0 0 0 0.18118 1 37639 37639 9.3831 0.63772 1 15668000 + 36319 25950 24136 24609 42782 42782 0.07442046822893644 LPSRVFHPAF 10 Unmodified _LPSRVFHPAF_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8853454589844 3 390.885464 1169.63456 0.38432 0.00015023 -0.30951 -0.00012098 0.074814 2.9244E-05 390.885376026821 47.802 0.30524 47.763 47.64 47.946 -0.038643 35 14 3 0 0 0 0.63089 1 25764 25764 9.544 1.0997 1 6151600 36320 7373 24137 24610 42783 42783 0.05653130842438259 LPSRVIEEL 9 Unmodified _LPSRVIEEL_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.3079223632812 2 528.308406 1054.60226 0.66543 0.00035155 -1.678 -0.0008865 -1.0126 -0.00053495 528.3077476561881 53.316 0.21797 53.316 53.221 53.439 0 18 9 3 0 0 0 0.21589 1 29551 29551 21.59 5.441 1 1614900 36321 682 24138 24611 42784 42784 0.07714298648807016 LPSSEVVKF 9 Unmodified _LPSSEVVKF_ 0 0 0 ENSG00000145365|ENST00000361717|TIFA ENSG00000145365|ENST00000361717|TIFA ENSG00000145365|ENST00000361717|TIFA MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2848510742188 2 503.2844 1004.55425 0.26924 0.0001355 0.78089 0.00039301 1.0501 0.00052851 503.2848410398572 56.161 0.45959 50.184 49.969 50.428 -5.9769 59 26 3 0 0 0 0.025842 2 35727 35727;35868 57.722 30.838 1 71428000 36322 5689 24139 24612 42785;42786 42785 0.05215224728760859 LPSSFLLWF 9 Unmodified _LPSSFLLWF_ 0 0 0 REV__ENST00000343348.10_1_5:115910063-115910231:-|nuORF REV__ENST00000343348.10_1_5:115910063-115910231:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3048706054688 2 555.305136 1108.59572 0.9799 0.00054415 -0.22451 -0.00012467 0.75539 0.00041947 555.3047284190492 49.581 0.23801 49.533 49.371 49.609 -0.048824 18 11 2 0 0 0 0.18465 1 26764 26764 24.674 7.561 1 1657300 + 36323 25735 24140 24613 42787 42787 0.04576405488069213 LPSSFVEKL 9 Unmodified _LPSSFVEKL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2922973632812 2 510.292225 1018.5699 0.21509 0.00010976 -0.16059 -8.1949E-05 0.054502 2.7812E-05 510.29228457009486 57.585 0.28312 57.096 56.943 57.226 -0.48974 25 13 2 0 0 0 0.024189 1 31312 31312 59.368 17.274 1 8068500 36324 6500 24141 24614 42788 42788 0.061355112458159056 LPSSFVEKL 9 Unmodified _LPSSFVEKL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000522480.5_1_16:21475086-21478634:-|nuORF;ENST00000566127.1_1_16:29556504-29560080:-|nuORF;ENST00000529428.5_1_16:30296511-30300103:-|nuORF;ENST00000532337.1_1_16:29451232-29458344:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2932739257812 2 510.292225 1018.5699 0.6791 0.00034654 0.15932 8.13E-05 0.83842 0.00042784 510.29236708297765 63.108 0.85321 56.932 56.653 57.506 -6.1757 98 46 3 0 0 0 0.0099157 1 40664 40664 80.676 23.205 1 38996000 36325 6500 24141 24614 42789 42789 0.061355112458159056 LPSSGRSSL 9 Unmodified _LPSSGRSSL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2488403320312 2 452.248349 902.482145 -0.080528 -3.6419E-05 -0.43585 -0.00019711 -0.51638 -0.00023353 452.24829330545157 23.522 0.29732 23.534 23.37 23.667 0.012396 26 13 3 0 0 0 0.078314 1 11980 11980 38.176 0.20157 1 8180600 36326 6157 24142 24615 42790 42790 0.027003103750416813 LPSSGRSSL 9 Unmodified _LPSSGRSSL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2488403320312 2 452.248349 902.482145 0.65881 0.00029795 -0.14337 -6.4839E-05 0.51544 0.00023311 452.2483127313859 26.631 0.55686 23.68 23.422 23.979 -2.9511 92 28 4 0 0 0 0.023481 2 14618 14618;14737 60.074 11.298 1 210890000 36327 6157 24142 24615 42791;42792 42791 0.027003103750416813 LPSSGRSSL 9 Unmodified _LPSSGRSSL_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 452.248349 902.482145 -0.080528 -3.6419E-05 -0.43585 -0.00019711 -0.51638 -0.00023353 452.24829330545157 23.522 0.29732 23.534 23.37 23.667 0.012396 0.028339 -0.00028504 NaN 60.074 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8180600 36328 6157 24142 24615 0.027003103750416813 LPSSHPNRM 9 Unmodified _LPSSHPNRM_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7630004882812 2 519.761101 1037.50765 1.5576 0.0008096 0.40161 0.00020874 1.9593 0.0010183 519.7621533821542 79.403 0.53427 73.228 72.93 73.464 -6.1757 95 30 4 0 0 0 0.28047 1 52156 52156 18.135 4.6271 1 167420000 36329 1188 24143 24616 42793 42793 -0.009605383741927653 LPSSIRTKAL 10 Unmodified _LPSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5606384277344 3 362.560758 1084.66044 -0.26608 -9.6471E-05 0.078683 2.8528E-05 -0.1874 -6.7943E-05 362.56070745333614 31.276 0.25931 31.306 31.152 31.411 0.030106 23 10 3 0 0 0 0.30444 1 16356 16356 23.964 0 1 12533000 36330 1774 24144 24617 42794 42794 0.12149980294088891 LPSSIRTKAL 10 Unmodified _LPSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3378295898438 2 543.337498 1084.66044 -0.18957 -0.000103 -0.34059 -0.00018505 -0.53016 -0.00028806 543.3372905209393 31.286 0.19188 31.316 31.199 31.391 0.030106 14 7 3 0 0 0 0.078742 1 16378 16378 51.415 0 1 2696600 36331 1774 24144 24617 42795 42795 0.12149980294088891 LPSSIRTKAL 10 Unmodified _LPSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5614624023438 3 362.560758 1084.66044 1.3376 0.00048496 -0.072618 -2.6328E-05 1.265 0.00045863 362.5606966460232 35.474 0.45086 31.281 31.076 31.527 -4.1928 84 27 4 0 0 0 0.25982 2 20520 20520;20658 31.636 5.6384 1 99451000 36332 1774 24144 24617 42796;42797 42796 0.12149980294088891 LPSSIRTKAL 10 Unmodified _LPSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3365478515625 2 543.337498 1084.66044 0.55129 0.00029954 0.15732 8.5477E-05 0.70861 0.00038501 543.3374091478153 35.517 0.36757 31.324 31.126 31.493 -4.1928 40 22 3 0 0 0 0.015874 1 20570 20570 79.427 7.7191 1 13606000 36333 1774 24144 24617 42798 42798 0.12149980294088891 LPSSIRTKAL 10 Unmodified _LPSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 362.560758 1084.66044 -0.26608 -9.6471E-05 0.078683 2.8528E-05 -0.1874 -6.7943E-05 362.56070745333614 31.276 0.25931 31.306 31.152 31.411 0.030106 0.012461 0.00012271 NaN 25.997 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 12533000 36334 1774 24144 24617 0.12149980294088891 LPSSKPFQ 8 Unmodified _LPSSKPFQ_ 0 0 0 ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2488098144531 2 452.25036 902.486168 0.5531 0.00025014 -3.9607 -0.0017912 -3.4076 -0.0015411 452.2482243869397 23.351 0.21935 23.371 23.267 23.487 0.019709 11 10 2 0 0 0 0.66338 1 12050 12050 20.454 1.0146 1 2304600 36335 7309 24145 24618 42799 42799 0.031023998687601306 LPSSPKHSI 9 Unmodified _LPSSPKHSI_ 0 0 0 ENST00000497232.5_1_2:74702580-74708169:-|nuORF ENST00000497232.5_1_2:74702580-74708169:-|nuORF ENST00000497232.5_1_2:74702580-74708169:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7588500976562 2 483.274367 964.53418 0.28634 0.00013838 0.8674 0.00041919 1.1537 0.00055757 483.2748356239391 23.965 0.27635 21.138 21.008 21.284 -2.8273 35 15 3 0 0 0 0.08691 1 12938 12938 36.127 3.8215 1 7476200 36336 14396 24146 24619 42800 42800 0.05049473788801606 LPSSQREVL 9 Unmodified _LPSSQREVL_ 0 0 0 ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF ENST00000455895.6_1_1:32852491-32860037:-|nuORF ENST00000455895.6_1_1:32852491-32860037:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7911987304688 2 514.790381 1027.56621 -1.0182 -0.00052416 -0.063613 -3.2747E-05 -1.0818 -0.00055691 514.7904695350294 32.591 0.252 32.591 32.481 32.733 0 25 13 2 0 0 0 0.05483 1 17025 17025 43.772 3.3238 1 2983800 36337 13592 24147 24620 42801 42801 0.05352841471949432 LPSSQREVL 9 Unmodified _LPSSQREVL_ 0 0 0 ENST00000455895.6_1_1:32852491-32860037:-|nuORF;ENST00000474414.5_1_1:32852491-32859819:-|nuORF ENST00000455895.6_1_1:32852491-32860037:-|nuORF ENST00000455895.6_1_1:32852491-32860037:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7907104492188 2 514.790381 1027.56621 1.0764 0.00055411 0.22199 0.00011428 1.2984 0.00066839 514.7901774612338 37.002 0.40282 32.718 32.571 32.974 -4.2835 50 24 3 0 0 0 0.05483 1 21650 21650 43.772 7.3062 1 12330000 36338 13592 24147 24620 42802 42802 0.05352841471949432 LPSSRQLVL 9 Unmodified _LPSSRQLVL_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8117065429688 2 506.811116 1011.60768 NaN NaN NaN NaN NaN NaN NaN 49.88 1 49.832 49.332 50.332 -0.048824 0 0 0 0.15231 1 26966 26966 36.506 0.040057 1 36339 5034 24148 24621 42803 42803 0.10234022231270501 LPSSSKER 8 Unmodified _LPSSSKER_ 0 0 0 REV__ENSG00000155754|ENST00000439140|C2CD6 REV__ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2484130859375 2 452.248349 902.482145 0.027074 1.2244E-05 0.081579 3.6894E-05 0.10865 4.9138E-05 452.2483854334518 23.439 0.37744 23.439 23.264 23.641 0 53 18 4 0 0 0 0.46677 2 11992 11894;11992 37.974 0 1 13095000 + 36340 21285 24149 24622 42804;42805 42805 0.0270031037505305 LPSSSKLQVY 10 Unmodified _LPSSSKLQVY_ 0 0 0 ENST00000372771.4_1_1:40688321-40697193:+|nuORF ENST00000372771.4_1_1:40688321-40697193:+|nuORF ENST00000372771.4_1_1:40688321-40697193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8134155273438 2 561.313689 1120.61282 0.46077 0.00025864 0.29556 0.0001659 0.75633 0.00042454 561.8151182864747 58.199 0.34985 57.71 57.513 57.863 -0.48974 56 16 4 0 0 0 0.44373 1 31582 31582 19.257 5.3509 1 20018000 36341 12389 24150 24623 42806 42806 0.05734281303239186 LPSSSLFPRF 10 Unmodified _LPSSSLFPRF_ 0 0 0 REV__ENSG00000265491|ENST00000582693|RNF115 REV__ENSG00000265491|ENST00000582693|RNF115 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8167114257812 2 575.816399 1149.61824 0.52353 0.00030146 -0.15613 -8.9902E-05 0.3674 0.00021156 575.8159914381419 79.052 0.37089 79.107 78.913 79.284 0.05497 34 14 3 0 0 0 0.14923 1 43666 43666 39.95 0 1 4162400 + 36342 24603 24151 24624 42807 42807 0.04942004885697315 LPSSTFQSL 9 Unmodified _LPSSTFQSL_ 0 0 0 ENST00000371521.8_3_9:140111106-140111352:+|nuORF ENST00000371521.8_3_9:140111106-140111352:+|nuORF ENST00000371521.8_3_9:140111106-140111352:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2582397460938 2 490.258382 978.502212 0.38305 0.00018779 -1.1087 -0.00054353 -0.7256 -0.00035573 490.2578692343843 67.244 0.39664 67.244 67.04 67.437 0 27 16 2 0 0 0 0.34999 1 37444 37444 14.838 0.25658 1 2606700 36343 12361 24152 24625 42808 42808 0.012100613149868877 LPSSTFQSL 9 Unmodified _LPSSTFQSL_ 0 0 0 ENST00000371521.8_3_9:140111106-140111352:+|nuORF ENST00000371521.8_3_9:140111106-140111352:+|nuORF ENST00000371521.8_3_9:140111106-140111352:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 490.258382 978.502212 0.74633 0.00036589 -2.011 -0.00098593 -1.2647 -0.00062004 490.2572955638307 67.733 0.29491 67.251 67.096 67.391 -0.48219 0.0035972 -0.00054652 NaN 14.838 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1240500 36344 12361 24152 24625 0.012100613149868877 LPSSTRITY 9 Unmodified _LPSSTRITY_ 0 0 0 nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC nc|ENSG00000079432|Q96RK0-2|CIC nc|ENSG00000079432|Q96RK0-2|CIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2843017578125 2 519.284931 1036.55531 -0.44546 -0.00023132 1.1989 0.00062256 0.75342 0.00039124 519.2853282444331 36.769 0.19897 36.519 36.405 36.604 -0.2497 15 8 2 0 0 0 0.062454 1 19311 19311 41.956 9.6501 1 3875200 36345 1277 24153 24626 42809 42809 0.03849439097643881 LPSSTRITY 9 Unmodified _LPSSTRITY_ 0 0 0 nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC nc|ENSG00000079432|Q96RK0-2|CIC nc|ENSG00000079432|Q96RK0-2|CIC MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2853393554688 2 519.284931 1036.55531 1.1102 0.00057652 -0.28484 -0.00014791 0.82539 0.00042861 519.2845023754501 41.626 0.35613 37.018 36.846 37.202 -4.6079 32 23 2 0 0 0 0.094149 1 24968 24968 34.402 11.665 1 14771000 36346 1277 24153 24626 42810 42810 0.03849439097643881 LPSSVISAI 9 Unmodified _LPSSVISAI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.5236206054688 1 886.52441 885.517133 0.16169 0.00014334 -0.60163 -0.00053336 -0.43994 -0.00039001 886.5236594589884 69.321 0.2226 69.321 69.177 69.4 0 16 9 2 0 0 0 0.019303 1 38602 38602 64.236 15.89 1 943210 36347 8367 24154 24627 42811 42811 0.0697955318298682 LPSSVISAI 9 Unmodified _LPSSVISAI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7659912109375 2 443.765843 885.517133 -0.15503 -6.8796E-05 0.96971 0.00043032 0.81468 0.00036153 443.76620158476277 69.781 0.36365 69.302 69.109 69.472 -0.47903 46 15 4 0 0 0 0.023164 1 38083 38083 60.39 9.5345 1 10229000 36348 8367 24154 24627 42812 42812 0.0697955318298682 LPSSVISAI 9 Unmodified _LPSSVISAI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 886.5264892578125 1 886.52441 885.517133 0.73181 0.00064877 -1.0862 -0.00096295 -0.3544 -0.00031418 886.5233716030032 69.278 0.16615 69.309 69.166 69.333 0.030914 11 7 2 0 0 0 0.012148 1 38036 38036 74.423 16.951 1 3213900 36349 8367 24154 24627 42813 42813 0.0697955318298682 LPSSVISAI 9 Unmodified _LPSSVISAI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.525634765625 1 886.52441 885.517133 -0.20635 -0.00018294 0.0079944 7.0872E-06 -0.19836 -0.00017585 886.5242377477849 76.603 0.53749 70.427 70.182 70.719 -6.1757 50 28 2 0 0 0 0.0067112 3 49995 49995;50117;50236 112.59 16.308 1 39601000 36350 8367 24154 24627 42814;42815;42816 42814 0.0697955318298682 LPSSVISAI 9 Unmodified _LPSSVISAI_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7658081054688 2 443.765843 885.517133 0.5476 0.00024301 -0.36326 -0.0001612 0.18434 8.1803E-05 443.7658739774294 76.608 0.63451 70.433 70.146 70.78 -6.1757 65 33 3 0 0 0 0.0077963 1 50239 50239 109.63 16.807 1 56932000 36351 8367 24154 24627 42817 42817 0.0697955318298682 LPSSVLCGSSF 11 Unmodified _LPSSVLCGSSF_ 0 0 0 ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;ENST00000305699.15_1_16:89806300-89831390:-|nuORF;ENST00000568983.5_1_16:89811164-89816202:-|nuORF ENSG00000187741|ENST00000389301|FANCA;ENST00000568983.5_1_16:89811164-89816202:-|nuORF ENSG00000187741|ENST00000389301|FANCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.769775390625 2 548.7708 1095.52705 0.16853 9.2483E-05 -0.47149 -0.00025874 -0.30296 -0.00016626 548.7702313044944 45.447 0.24218 45.447 45.324 45.567 0 20 13 2 0 0 0 0.44389 1 24762 24762 19.257 0 1 12672000 36352 9590;15454 24155 24628 42818 42818 -0.01689626873940142 LPSSVLLSL 9 Unmodified _LPSSVLLSL_ 0 0 0 REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5731811523438 1 928.57136 927.564084 0.41058 0.00038125 0.42246 0.00039229 0.83305 0.00077354 928.5715471303847 87.326 0.31512 86.822 86.631 86.946 -0.50423 22 12 2 0 0 0 0.095405 1 47718 47718 34.102 0 1 995800 + 36353 27922 24156 24629 42819 42819 0.09740412734140591 LPSSVLLSL 9 Unmodified _LPSSVLLSL_ 0 0 0 REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7886657714844 2 464.789318 927.564084 1.318 0.00061257 -0.5963 -0.00027715 0.72166 0.00033542 464.78915623543094 97.212 1.1369 91.036 90.305 91.441 -6.1757 147 65 3 0 0 0 0.0090851 5 64249 63997;64249;64364;64491;64617 85.357 0 1 36056000 + 36354 27922 24156 24629 42820;42821;42822;42823;42824 42821 0.09740412734140591 LPSSVLLSL 9 Unmodified _LPSSVLLSL_ 0 0 0 REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF REV__ENST00000493504.1_1_19:59094431-59094902:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.5742797851562 1 928.57136 927.564084 1.3661 0.0012685 0.1198 0.00011124 1.4859 0.0013798 928.5714327944023 97.157 0.60937 90.981 90.722 91.332 -6.1757 50 34 2 0 0 0 0.0082281 4 64303 64303;64360;64429;64545 104.8 0 1 13776000 + 36355 27922 24156 24629 42825;42826;42827;42828 42825 0.09740412734140591 LPSSVRLFDD 10 Unmodified _LPSSVRLFDD_ 0 0 0 REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF REV__ENST00000481757.5_1_2:241513848-241514670:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8001708984375 2 574.800946 1147.58734 0.83006 0.00047712 -1.0685 -0.00061418 -0.23846 -0.00013706 574.7998460466545 47.278 0.28054 46.925 46.74 47.02 -0.3526 25 13 3 0 0 0 0.38026 1 25314 25314 26.268 1.2772 1 3628200 + 36356 27701 24157 24630 42829 42829 0.01944806780829822 LPSSWDYRY 9 Unmodified _LPSSWDYRY_ 0 0 0 ENST00000396655.6_1_12:4758292-4777674:+|nuORF ENST00000396655.6_1_12:4758292-4777674:+|nuORF ENST00000396655.6_1_12:4758292-4777674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7804565429688 2 593.780013 1185.54547 0.3694 0.00021934 0.35968 0.00021357 0.72907 0.00043291 593.7805014510919 51.032 0.21972 50.618 50.479 50.698 -0.41351 17 10 2 0 0 0 0.13231 1 27478 27478 29.841 16.798 1 1992100 36357 12802 24158 24631 42830 42830 -0.039877489077071004 LPSTAPAPA 9 Unmodified _LPSTAPAPA_ 0 0 0 ENST00000544304.5_1_12:120554610-120555222:-|nuORF ENST00000544304.5_1_12:120554610-120555222:-|nuORF ENST00000544304.5_1_12:120554610-120555222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.45654296875 1 824.451245 823.443968 -0.42682 -0.00035189 -0.24992 -0.00020605 -0.67675 -0.00055795 824.4510061976362 76.556 0.50838 76.076 75.835 76.343 -0.47945 69 30 3 0 0 0 0.39863 1 41905 41905 12.532 0 1 10382000 36358 15079 24159 24632 42831 42831 0.025184244603678962 LPSTCTSTF 9 Unmodified _LPSTCTSTF_ 0 0 0 REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF REV__ENST00000457542.6_2_15:42118039-42118483:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7244873046875 2 478.723318 955.432083 -0.10134 -4.8515E-05 0.24914 0.00011927 0.14779 7.0753E-05 478.7234816848255 31.768 0.24004 31.768 31.6 31.84 0 17 11 2 0 0 0 0.48152 1 16580 16580 8.5933 2.2392 1 710570 + 36359 27270 24160 24633 42832 42832 -0.047415603451327115 LPSTEAVAL 9 Unmodified _LPSTEAVAL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 900.5026245117188 1 900.503674 899.496398 0.026448 2.3816E-05 0.0039755 3.58E-06 0.030423 2.7396E-05 900.503865244337 55.017 0.22952 55.017 54.897 55.126 0 12 9 2 0 0 0 0.038285 1 30545 30545 50.855 2.5092 1 1182700 36360 1790 24161 24634 42833 42833 0.0426296280331826 LPSTEAVAL 9 Unmodified _LPSTEAVAL_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7551879882812 2 450.755475 899.496398 0.37409 0.00016862 0.72537 0.00032697 1.0995 0.00049559 450.7557490137808 55.041 0.2961 55.041 54.852 55.149 0 17 12 2 0 0 0 0.078417 1 30552 30552 38.151 2.107 1 1471600 36361 1790 24161 24634 42834 42834 0.0426296280331826 LPSTTIVSM 9 Unmodified _LPSTTIVSM_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7580871582031 2 474.757161 947.499769 NaN NaN NaN NaN NaN NaN NaN 60.324 1 59.833 59.333 60.333 -0.49079 0 0 0 0.6032 1 32846 32846 12.532 4.6214 1 36362 6893 24162 24635 42835 42835 0.02391889585703666 LPSTTIVSM 9 Unmodified _LPSTTIVSM_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7573547363281 2 474.757161 947.499769 0.59819 0.000284 -2.7574 -0.0013091 -2.1592 -0.0010251 474.75604909087684 67.884 0.45859 61.708 61.517 61.975 -6.1757 48 26 3 0 0 0 0.087258 2 44245 44190;44245 36.044 11.37 1 22779000 36363 6893 24162 24635 42836;42837 42837 0.02391889585703666 LPSTWDYRY 9 Unmodified _LPSTWDYRY_ 0 0 0 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.7879028320312 2 600.787838 1199.56112 0.53319 0.00032033 0.6745 0.00040523 1.2077 0.00072557 600.7874955176779 52.471 0.15657 52.037 51.964 52.12 -0.43367 13 7 2 0 0 0 0.19361 1 28376 28376 23.79 8.9515 1 2084700 36364 16479 24163 24636 42838 42838 -0.030674623906861598 LPSTWDYRY 9 Unmodified _LPSTWDYRY_ 0 0 0 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.787353515625 2 600.787838 1199.56112 -0.21497 -0.00012915 1.8646 0.0011202 1.6496 0.00099107 600.7879945234063 58.191 0.3489 52.164 51.957 52.306 -6.0275 28 18 2 0 0 0 0.025842 1 37207 37207 57.722 23.62 1 21952000 36365 16479 24163 24636 42839 42839 -0.030674623906861598 LPSTWDYRY 9 Unmodified _LPSTWDYRY_ 0 0 0 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 nc|ENSG00000196417|Q7L2R6-3|ZNF765 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 600.787838 1199.56112 0.37131 0.00022308 2.9094 0.001748 3.2808 0.001971 600.7899637014426 52.166 0.18361 52.107 52.027 52.21 -0.058918 0.0042076 0.0011479 NaN 57.722 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 872000 36366 16479 24163 24636 -0.030674623906861598 LPSVHRDFL 9 Unmodified _LPSVHRDFL_ 0 0 0 ENST00000606895.1_1_17:62206634-62206823:-|nuORF ENST00000606895.1_1_17:62206634-62206823:-|nuORF ENST00000606895.1_1_17:62206634-62206823:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3013916015625 2 542.300916 1082.58728 0.56132 0.00030441 1.3541 0.00073436 1.9155 0.0010388 542.301710109262 48.17 0.40141 42.936 42.74 43.142 -5.2339 41 23 2 0 0 0 0.10734 1 30029 30029 32.305 3.8186 1 19272000 36367 15854 24164 24637 42840 42840 0.04928851571457926 LPSVLHALLAG 11 Unmodified _LPSVLHALLAG_ 0 0 0 REV__ENSG00000140955|ENST00000315906|ADAD2 REV__ENSG00000140955|ENST00000315906|ADAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8280639648438 2 545.834591 1089.65463 0.21827 0.00011914 -0.68982 -0.00037653 -0.47154 -0.00025738 545.8340554832839 73.35 0.58311 73.394 73.071 73.654 0.043983 68 26 4 0 0 0 0.088077 1 40327 40327 43.858 3.6191 1 10876000 + 36368 20504 24165 24638 42841 42841 0.11338881782398857 LPSVLLIVE 9 Unmodified _LPSVLLIVE_ 0 0 0 ENST00000392253.2_1_2:202276596-202276920:-|nuORF ENST00000392253.2_1_2:202276596-202276920:-|nuORF ENST00000392253.2_1_2:202276596-202276920:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.8130187988281 2 491.812793 981.611034 1.3153 0.00064688 -0.84814 -0.00041713 0.46716 0.00022976 491.8124819974679 100.78 0.10989 94.602 94.541 94.651 -6.1757 12 7 2 0 0 0 0.012148 1 67505 67505 74.423 7.0789 1 14946000 36369 12667 24166 24639 42842 42842 0.11949272285278312 LPSVTLFSA 9 Unmodified _LPSVTLFSA_ 0 0 0 ENST00000470882.5_1_1:161143647-161146009:-|nuORF ENST00000470882.5_1_1:161143647-161146009:-|nuORF ENST00000470882.5_1_1:161143647-161146009:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7659606933594 2 467.765843 933.517133 NaN NaN NaN NaN NaN NaN NaN 74.865 1 74.389 73.889 74.889 -0.47588 0 0 0 0.83049 1 40973 40973 3.9444 0 1 36370 13861 24167 24640 42843 42843 0.04771553183002197 LPSVYHPYI 9 Unmodified _LPSVYHPYI_ 0 0 0 ENSG00000170689|ENST00000311177|HOXB9 ENSG00000170689|ENST00000311177|HOXB9 ENSG00000170689|ENST00000311177|HOXB9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7919311523438 2 544.792392 1087.57023 0.94029 0.00051226 -0.29186 -0.00015901 0.64842 0.00035326 544.7919671190451 71.985 1.1645 65.809 65.304 66.468 -6.1757 144 61 3 0 0 0 0.2143 1 47131 47131 21.747 21.747 1 104630000 36371 8016 24168 24641 42844 42844 0.029949309656331025 LPSWFLFGLFA 11 Unmodified _LPSWFLFGLFA_ 0 0 0 REV__nc|ENSG00000103056|Q9NY59-2|SMPD3 REV__nc|ENSG00000103056|Q9NY59-2|SMPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.3517456054688 2 649.352617 1296.69068 -0.029081 -1.8884E-05 0.0042509 2.7603E-06 -0.024831 -1.6124E-05 649.35286089851 87.337 0.38432 87.337 87.147 87.531 0 33 18 2 0 0 0 0.71036 1 48315 48315 3.2813 0.54611 1 441320 + 36372 18282 24169 24642 42845 42845 0.05420338959265791 LPSWVLSSSSA 11 Unmodified _LPSWVLSSSSA_ 0 0 0 REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF REV__ENST00000248958.4_1_22:21998288-21998567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.295166015625 2 567.295496 1132.57644 -0.28582 -0.00016214 -0.10606 -6.0166E-05 -0.39188 -0.00022231 567.2953593170985 35.9 0.40014 35.677 35.393 35.793 -0.2224 27 17 2 0 0 0 0.27261 1 18763 18763 22.736 0 1 6465200 + 36373 24874 24170 24643 42846 42846 0.015454044065336348 LPSYDFAVI 9 Unmodified _LPSYDFAVI_ 0 0 0 REV__ENSG00000081800|ENST00000194130|SLC13A1 REV__ENSG00000081800|ENST00000194130|SLC13A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7701416015625 2 512.771126 1023.5277 NaN NaN NaN NaN NaN NaN NaN 82.679 1 82.182 81.682 82.682 -0.49751 0 0 0 0.40995 1 45261 45261 19.439 1.304 1 + 36374 17696 24171 24644 42847 42847 0.016875358374250027 LPSYDFAVI 9 Unmodified _LPSYDFAVI_ 0 0 0 REV__ENSG00000081800|ENST00000194130|SLC13A1 REV__ENSG00000081800|ENST00000194130|SLC13A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.2489013671875 2 512.771126 1023.5277 0.64995 0.00033327 -0.96858 -0.00049666 -0.31863 -0.00016338 512.771152033532 90.313 0.53281 84.138 83.774 84.307 -6.1757 46 30 2 0 0 0 0.18118 1 59678 59678 18.135 1.1927 1 13557000 + 36375 17696 24171 24644 42848 42848 0.016875358374250027 LPSYSLNHIY 10 Unmodified _LPSYSLNHIY_ 0 0 0 ENST00000482016.5_1_3:88105110-88106361:-|nuORF ENST00000482016.5_1_3:88105110-88106361:-|nuORF ENST00000482016.5_1_3:88105110-88106361:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.27685546875 2 603.811313 1205.60807 1.4774 0.00089207 -1.7832 -0.0010767 -0.30576 -0.00018462 603.8114383184821 62.593 0.31393 56.417 56.23 56.544 -6.1757 22 15 2 0 0 0 0.13998 1 40328 40328 38.615 15.466 1 9210500 36376 14095 24172 24645 42849 42849 0.013493971604930266 LPSYSQALLAF 11 Unmodified _LPSYSQALLAF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8326416015625 2 605.329339 1208.64412 1.7392 0.0010528 0.1584 9.5883E-05 1.8976 0.0011486 605.3293993024101 93.015 0.31693 93.038 92.897 93.214 0.022987 25 12 3 0 0 0 0.37147 1 51735 51735 28.495 8.08 1 2352900 36377 5216 24173 24646 42850 42850 0.04814854337337238 LPTADIAQF 9 Unmodified _LPTADIAQF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2614440917969 2 488.260925 974.507297 0.42818 0.00020906 -0.54564 -0.00026641 -0.11746 -5.7351E-05 488.26088688206625 66.767 0.33904 66.767 66.557 66.896 0 45 15 4 0 0 0 0.06187 2 37176 37176;37277 42.095 9.7891 1 7926100 36378 5988 24174 24647 42851;42852 42851 0.01902365177613774 LPTADIAQF 9 Unmodified _LPTADIAQF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2612915039062 2 488.260925 974.507297 0.21984 0.00010734 1.7237 0.00084162 1.9435 0.00094895 488.26167555098067 77.203 0.30603 77.203 77.033 77.339 0 27 14 3 0 0 0 0.39863 1 42872 42872 12.532 0.89125 1 968260 36379 5988 24174 24647 42853 42853 0.01902365177613774 LPTADIAQF 9 Unmodified _LPTADIAQF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5130004882812 1 975.514573 974.507297 0.33569 0.00032747 0.64383 0.00062807 0.97953 0.00095554 975.5157618572993 67.322 0.26819 66.84 66.695 66.963 -0.48218 19 11 2 0 0 0 0.024882 1 36740 36740 58.679 6.4105 1 1594000 36380 5988 24174 24647 42854 42854 0.01902365177613774 LPTADIAQF 9 Unmodified _LPTADIAQF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2606201171875 2 488.260925 974.507297 0.57967 0.00028303 -0.59369 -0.00028988 -0.014016 -6.8435E-06 488.26058358971153 67.279 0.32896 66.797 66.656 66.985 -0.48218 42 14 4 0 0 0 0.087258 1 36828 36828 36.044 7.5574 1 6196000 36381 5988 24174 24647 42855 42855 0.01902365177613774 LPTADIAQF 9 Unmodified _LPTADIAQF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2616271972656 2 488.260925 974.507297 0.94167 0.00045978 -0.54446 -0.00026584 0.39721 0.00019394 488.260645143366 74.121 0.4433 67.945 67.825 68.268 -6.1757 40 22 2 0 0 0 0.013323 1 48548 48548 71.134 12.455 1 22224000 36382 5988 24174 24647 42856 42856 0.01902365177613774 LPTAKEPLI 9 Unmodified _LPTAKEPLI_ 0 0 0 REV__ENSG00000151835|ENST00000382292|SACS REV__ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.8048706054688 2 491.302593 980.590633 0.77517 0.00038084 -0.18454 -9.0664E-05 0.59063 0.00029018 491.3025570088794 82.51 0.28716 82.014 81.843 82.13 -0.4952 18 11 2 0 0 0 0.39863 1 45135 45135 12.532 4.6214 1 362880 + 36383 21093 24175 24648 42857 42857 0.09956101625471092 LPTAVEPLM 9 Oxidation (M) _LPTAVEPLM(Oxidation (M))_ LPTAVEPLM(1) LPTAVEPLM(42) 0 0 1 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7658996582031 2 493.764986 985.515419 0.35551 0.00017554 -0.5637 -0.00027833 -0.20818 -0.00010279 493.7652090802821 52.936 0.20325 52.936 52.836 53.039 0 13 9 2 0 0 0 0.06187 1 29329 29329 42.095 23.96 1 1211200 36384 3374 24176 24649 42858 42858 599 0.022081761027379798 LPTAVVPLRY 10 Unmodified _LPTAVVPLRY_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3088989257812 2 564.842416 1127.67028 0.64569 0.00036471 -1.9994 -0.0011293 -1.3537 -0.00076464 565.3436619231294 63.061 0.181 63.039 62.908 63.089 -0.021614 12 8 2 0 0 0 0.22941 1 34470 34470 13.906 1.3745 1 905190 36385 2967 24177 24650 42859 42859 0.11155168299455909 LPTDAVDCM 9 Carbamidomethyl (C),Oxidation (M) _LPTDAVDC(Carbamidomethyl (C))M(Oxidation (M))_ LPTDAVDC(1)M LPTDAVDCM(1) LPTDAVDC(85)M LPTDAVDCM(85) 0 1 1 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2171630859375 2 519.217543 1036.42053 1.0825 0.00056205 -1.3665 -0.00070952 -0.28403 -0.00014747 519.2172403329724 38.046 0.33949 33.677 33.516 33.855 -4.3689 47 19 3 0 0 0 0.0090851 1 22366 22366 85.357 58.473 1 23101000 36386 8791 24178 24651 42860 42860 835 1481 -0.09622125430769302 LPTDSAIIM 9 Oxidation (M) _LPTDSAIIM(Oxidation (M))_ LPTDSAIIM(1) LPTDSAIIM(85) 0 0 1 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.5021362304688 1 976.50196 975.494683 -0.25079 -0.00024489 1.6309 0.0015926 1.3801 0.0013477 976.5030807936724 48.884 0.36745 48.884 48.695 49.062 0 28 17 2 0 0 0 0.0090851 2 26788 26788;26905 85.357 43.262 1 2782300 36387 5803 24179 24652 42861;42862 42861 1046 0.005955857230787842 LPTDSATVL 9 Unmodified _LPTDSATVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7532958984375 2 458.752933 915.491313 1.1229 0.00051515 -0.5165 -0.00023694 0.60643 0.0002782 458.752660134284 51.261 0.48624 51.261 51.014 51.5 0 74 22 4 0 0 0 0.010877 2 28195 28195;28305 77.984 7.2688 1 105490000 36388 9879 24180 24653 42863;42864 42863 0.030186589406980602 LPTDSATVL 9 Unmodified _LPTDSATVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 916.4953002929688 1 916.498589 915.491313 0.65934 0.00060429 -0.30661 -0.00028101 0.35273 0.00032328 916.4981240415898 51.217 0.50838 51.217 51.014 51.522 0 77 23 5 0 0 0 0.0090851 3 28201 28201;28316;28424 85.357 34.502 1 117340000 36389 9879 24180 24653 42865;42866;42867 42865 0.030186589406980602 LPTDSATVL 9 Unmodified _LPTDSATVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.4982299804688 1 916.498589 915.491313 0.59163 0.00054223 -0.035405 -3.2449E-05 0.55623 0.00050978 916.4983592229472 59.767 0.58599 53.652 53.357 53.943 -6.1147 77 32 3 0 0 0 0.0083087 3 38226 38226;38348;38484 97.075 36.685 1 184420000 36390 9879 24180 24653 42868;42869;42870 42868 0.030186589406980602 LPTDSATVL 9 Unmodified _LPTDSATVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7538452148438 2 458.752933 915.491313 0.94605 0.000434 0.45095 0.00020687 1.397 0.00064088 458.75308649337427 59.742 0.64587 53.627 53.337 53.983 -6.1147 90 35 3 0 0 0 0.010877 2 38231 38231;38516 77.984 7.2688 1 299610000 36391 9879 24180 24653 42871;42872 42871 0.030186589406980602 LPTDSHASL 9 Unmodified _LPTDSHASL_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7404174804688 2 470.740357 939.46616 -0.46279 -0.00021785 0.67474 0.00031763 0.21195 9.9773E-05 470.74057509816714 30.211 0.22351 30.211 30.1 30.324 0 26 10 3 0 0 0 0.022193 1 15669 15669 61.357 21.4 1 4116300 36392 874 24181 24654 42873 42873 -0.005993958618546458 LPTDSHASL 9 Unmodified _LPTDSHASL_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS AL20221201_MKP_PDAC_01 4 470.740478515625 2 470.740357 939.46616 NaN NaN NaN NaN NaN NaN NaN 34.826 1 30.73 30.23 31.23 -4.0951 0 0 0 0.04157 1 20125 20125 61.357 21.4 1 36393 874 24181 24654 42874 42874 -0.005993958618546458 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2762451171875 2 515.276772 1028.53899 0.44499 0.00022929 -0.83026 -0.00042781 -0.38527 -0.00019852 515.2757319750923 59.452 0.36346 59.452 59.329 59.693 0 30 15 3 0 0 0 0.047196 1 33121 33121 46.021 4.1813 1 5055000 36394 6889;9141 24182 24655 42875 42875 0.02586313140909624 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2757568359375 2 515.276772 1028.53899 0.19311 9.9507E-05 -1.0119 -0.00052139 -0.81876 -0.00042189 515.2761941346453 62.459 0.49223 62.459 62.257 62.749 0 109 29 5 0 0 0 0.015445 2 34862 34758;34862 68.081 15.812 1 207010000 36395 6889;9141 24182 24655 42876;42877 42877 0.02586313140909624 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2765502929688 2 515.276772 1028.53899 0.38446 0.0001981 -0.20179 -0.00010398 0.18267 9.4128E-05 515.2763518433433 62.974 0.32435 62.488 62.385 62.709 -0.48617 35 15 3 0 0 0 0.022193 1 34329 34329 61.357 9.0891 1 9600900 36396 6889;9141 24182 24655 42878 42878 0.02586313140909624 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.27734375 2 515.276772 1028.53899 0.46923 0.00024178 0.13465 6.9382E-05 0.60388 0.00031117 515.2766259947533 62.603 0.30389 62.581 62.413 62.717 -0.021614 28 15 2 0 0 0 0.06187 1 34239 34239 42.095 5.9675 1 4749800 36397 6889;9141 24182 24655 42879 42879 0.02586313140909624 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2770385742188 2 515.276772 1028.53899 0.93322 0.00048087 0.0203 1.046E-05 0.95352 0.00049133 515.2768333478551 70.574 0.59765 64.399 64.066 64.663 -6.1757 93 32 4 0 0 0 0.0082661 3 46089 45964;46089;46212 92.491 17.562 1 248060000 36398 6889;9141 24182 24655 42880;42881;42882 42881 0.02586313140909624 LPTDTLQEL 9 Unmodified _LPTDTLQEL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;nc|ENSG00000183347|Q6ZN66-2|GBP6 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1029.552734375 1 1029.54627 1028.53899 0.77596 0.00079888 1.1298 0.0011632 1.9058 0.0019621 1029.5474706013244 70.579 0.30967 64.404 64.186 64.496 -6.1757 27 16 2 0 0 0 1.6646999999999999E-28 1 46079 46079 208.15 84.695 1 31202000 36399 6889;9141 24182 24655 42883 42883 0.02586313140909624 LPTEAEFQL 9 Unmodified _LPTEAEFQL_ 0 0 0 ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C ENSG00000183508|ENST00000369448|TENT5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2725830078125 2 524.27149 1046.52843 0.21122 0.00011074 0.084687 4.4399E-05 0.29591 0.00015514 524.2713526894091 70.612 0.24458 70.612 70.474 70.718 0 17 10 2 0 0 0 0.2001 1 39331 39331 23.148 9.6405 1 937770 36400 9154 24183 24656 42884 42884 0.00702330486478786 LPTEAEWEY 9 Unmodified _LPTEAEWEY_ 0 0 0 nc|ENSG00000144455|Q8NBK3-2|SUMF1;nc|ENSG00000144455|Q8NBK3-5|SUMF1;ENSG00000144455|ENST00000272902|SUMF1;nc|ENSG00000144455|Q8NBK3-3|SUMF1;nc|ENSG00000144455|Q8NBK3-4|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 nc|ENSG00000144455|Q8NBK3-2|SUMF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2598266601562 2 569.258579 1136.50261 0.44071 0.00025088 -1.2482 -0.00071057 -0.80753 -0.00045969 569.2580920140697 59.219 0.36462 59.219 58.965 59.329 0 27 15 2 0 0 0 0.10734 1 32939 32939 32.305 15.219 1 5098800 36401 5612 24184 24657 42885 42885 -0.060185637558106464 LPTEDLREGRW 11 Unmodified _LPTEDLREGRW_ 0 0 0 ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.9051208496094 3 457.905364 1370.69426 NaN NaN NaN NaN NaN NaN NaN 35.978 1 35.978 35.478 36.478 0 0 0 0 0.93613 1 19053 19053 2.4348 0 1 36402 11017 24185 24658 42886 42886 0.02374356995164817 LPTEDLREGRW 11 Unmodified _LPTEDLREGRW_ 0 0 0 ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3536376953125 2 686.354408 1370.69426 NaN NaN NaN NaN NaN NaN NaN 36.1 1 36.1 35.6 36.6 0 0 0 0 0.93933 1 19126 19126 2.9952 0 1 36403 11017 24185 24658 42887 42887 0.02374356995164817 LPTEDLREGRW 11 Unmodified _LPTEDLREGRW_ 0 0 0 ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF ENST00000216968.4_1_20:33764702-33764822:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.353759765625 2 686.354408 1370.69426 0.38103 0.00026152 -0.68928 -0.00047309 -0.30825 -0.00021157 686.3539529540375 41.503 0.43834 36.895 36.639 37.077 -4.6079 73 28 3 0 0 0 0.50515 1 24820 24820 16.149 4.6544 1 59870000 36404 11017 24185 24658 42888 42888 0.02374356995164817 LPTEEEWEF 9 Unmodified _LPTEEEWEF_ 0 0 0 nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2627563476562 2 590.263862 1178.51317 0.50325 0.00029705 -0.78484 -0.00046327 -0.2816 -0.00016622 590.2635353652794 73.37 0.39599 73.37 73.195 73.591 0 57 21 3 0 0 0 0.13231 2 40815 40815;40919 39.957 29.133 1 5263700 36405 4115 24186 24659 42889;42890 42889 -0.06894581101369113 LPTEEEWEF 9 Unmodified _LPTEEEWEF_ 0 0 0 nc|ENSG00000129103|Q8NBJ7-2|SUMF2;ENSG00000129103|ENST00000434526|SUMF2;nc|ENSG00000129103|Q8NBJ7-3|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 nc|ENSG00000129103|Q8NBJ7-2|SUMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.265380859375 2 590.263862 1178.51317 1.0068 0.00059427 0.79754 0.00047076 1.8043 0.001065 590.2643601661372 81.313 0.53699 75.137 74.944 75.481 -6.1757 59 30 3 0 0 0 0.13231 1 53329 53329 39.957 19.504 1 30352000 36406 4115 24186 24659 42891 42891 -0.06894581101369113 LPTEEQRVY 9 Unmodified _LPTEEQRVY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7932739257812 2 567.793121 1133.57169 -0.34669 -0.00019685 0.75239 0.0004272 0.40569 0.00023035 567.793387309445 30.638 0.26822 30.638 30.503 30.771 0 38 12 4 0 0 0 0.01958 2 15886 15886;15984 63.961 29.559 1 12650000 36407 16412 24187 24660 42892;42893 42892 0.010245202637634065 LPTEEQRVY 9 Unmodified _LPTEEQRVY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7933959960938 2 567.793121 1133.57169 0.91077 0.00051713 0.084971 4.8246E-05 0.99574 0.00056537 567.792715364636 35.181 0.39912 31.085 30.916 31.316 -4.0951 56 23 3 0 0 0 0.0082548 2 20341 20341;20471 96.367 48.618 1 21644000 36408 16412 24187 24660 42894;42895 42894 0.010245202637634065 LPTEISQSL 9 Unmodified _LPTEISQSL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2710571289062 2 494.27149 986.528426 -0.36589 -0.00018085 0.73794 0.00036474 0.37205 0.00018389 494.2717198444017 56.009 0.31163 56.009 55.892 56.204 0 32 15 3 0 0 0 0.0095811 2 31115 31115;31224 81.613 21.462 1 6413500 36409 2128 24188 24661 42896;42897 42896 0.03462330486490828 LPTEISQSL 9 Unmodified _LPTEISQSL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2734680175781 2 494.27149 986.528426 1.4203 0.00070199 0.44611 0.0002205 1.8664 0.00092249 494.27150537746155 63.997 0.34856 57.821 57.669 58.017 -6.1757 34 18 2 0 0 0 0.042911 1 41484 41484 48.346 12.219 1 15653000 36410 2128 24188 24661 42898 42898 0.03462330486490828 LPTELPPL 8 Unmodified _LPTELPPL_ 0 0 0 REV__ENSG00000187210|ENST00000376730|GCNT1 REV__ENSG00000187210|ENST00000376730|GCNT1 MSMS AL20221201_MKP_PDAC_01 4 439.7954711914062 2 440.262936 878.51132 NaN NaN NaN NaN NaN NaN NaN 72.097 1 65.921 65.421 66.421 -6.1757 0 0 0 0.9706 1 47180 47180 6.3541 0 1 + 36411 23627 24189 24662 42899 42899 0.06720454671335574 LPTENELTF 9 Unmodified _LPTENELTF_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2688598632812 2 532.268947 1062.52334 0.24583 0.00013085 -0.058414 -3.1092E-05 0.18742 9.9758E-05 532.2688876774732 65.017 0.64922 65.017 64.745 65.394 0 87 28 4 0 0 0 0.009483 2 36215 36215;36320 81.89 44.047 1 63848000 36412 840 24190 24663 42900;42901 42900 -0.005419733761527823 LPTENELTF 9 Unmodified _LPTENELTF_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2689819335938 2 532.268947 1062.52334 0.057701 3.0712E-05 0.15338 8.1639E-05 0.21108 0.00011235 532.2694061945363 65.565 0.43884 65.081 64.898 65.337 -0.48428 53 19 4 0 0 0 0.06294 1 35785 35785 41.84 21.386 1 6556900 36413 840 24190 24663 42902 42902 -0.005419733761527823 LPTENELTF 9 Unmodified _LPTENELTF_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2697143554688 2 532.268947 1062.52334 1.0231 0.00054455 0.64025 0.00034079 1.6633 0.00088533 532.2690749040382 71.957 0.36042 65.781 65.537 65.898 -6.1757 28 20 2 0 0 0 0.03568 1 47026 47026 52.268 16.141 1 221590000 36414 840 24190 24663 42903 42903 -0.005419733761527823 LPTENELTF 9 Unmodified _LPTENELTF_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.268947 1062.52334 0.60497 0.000322 0.54327 0.00028917 1.1482 0.00061117 532.2690974888636 65.148 0.26377 65.148 64.997 65.261 7.6294E-06 0.065896 0.00051966 NaN 81.89 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2651900 36415 840 24190 24663 -0.005419733761527823 LPTENVDKM 9 Oxidation (M) _LPTENVDKM(Oxidation (M))_ LPTENVDKM(1) LPTENVDKM(79) 0 0 1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7600708007812 2 531.760432 1061.50631 -0.11527 -6.1296E-05 -0.64834 -0.00034476 -0.76361 -0.00040606 531.7601590110584 21.669 0.28332 21.669 21.518 21.802 0 124 42 4 0 0 0 0.010362 1 11017 11017 79.427 33.687 1 11026000 36416 10089 24191 24664 42904 42904 1640 -0.02198217253612711 LPTENVDKM 9 Oxidation (M) _LPTENVDKM(Oxidation (M))_ LPTENVDKM(1) LPTENVDKM(88) 0 0 1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7611694335938 2 531.760432 1061.50631 0.0042718 2.2716E-06 -0.56857 -0.00030234 -0.5643 -0.00030007 531.7602149975778 25.125 0.35768 22.242 22.106 22.464 -2.8831 87 34 3 0 0 0 0.0087399 2 13674 13674;13788 88.364 28.995 1 47278000 36417 10089 24191 24664 42905;42906 42905 1640 -0.02198217253612711 LPTENVDKM 9 Unmodified _LPTENVDKM_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2291870117188 2 523.762975 1045.5114 -0.91543 -0.00047947 -0.89621 -0.0004694 -1.8116 -0.00094887 523.7618249344223 32.471 0.087551 32.471 32.444 32.532 0 10 6 2 0 0 0 0.15936 1 16960 16960 16.149 3.1066 1 6513700 36418 10089 24191 24665 42907 42907 -0.009539133909811426 LPTENVDKM 9 Unmodified _LPTENVDKM_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7637329101562 2 523.762975 1045.5114 1.299 0.00068036 -0.17513 -9.1726E-05 1.1239 0.00058863 523.7637990899046 37.594 0.39895 33.245 33.021 33.419 -4.3497 56 23 3 0 0 0 0.014182 2 22144 22019;22144 69.338 27.383 1 67360000 36419 10089 24191 24665 42908;42909 42909 -0.009539133909811426 LPTEPPYTAY 10 Unmodified _LPTEPPYTAY_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2841186523438 2 576.284597 1150.55464 0.62497 0.00036016 -0.91852 -0.00052933 -0.29355 -0.00016917 576.284043168822 53.431 0.77725 53.431 53.02 53.797 0 121 35 5 0 0 0 0.039874 3 29497 29497;29602;29720 74.929 48.045 1 171090000 36420 16107;2451 24192 24666 42910;42911;42912 42910 -0.014614003420547306 LPTEPPYTAY 10 Unmodified _LPTEPPYTAY_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.28515625 2 576.284597 1150.55464 0.36025 0.0002076 -0.32487 -0.00018722 0.035381 2.039E-05 576.284644167593 54.108 0.81488 53.641 53.347 54.162 -0.46664 129 41 4 0 0 0 0.078742 3 29281 29177;29281;29387 61.357 44.415 1 105330000 36421 16107;2451 24192 24666 42913;42914;42915 42914 -0.014614003420547306 LPTEPPYTAY 10 Unmodified _LPTEPPYTAY_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2852783203125 2 576.284597 1150.55464 1.1687 0.00067353 -0.27034 -0.0001558 0.8984 0.00051774 576.2843587259936 61.571 0.75201 55.395 55.008 55.76 -6.1757 73 38 2 0 0 0 0.021614 3 39779 39519;39644;39779 88.904 49.308 1 1024899999.9999999 36422 16107;2451 24192 24666 42916;42917;42918 42918 -0.014614003420547306 LPTEQEVRF 9 Unmodified _LPTEQEVRF_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.796630859375 2 559.795663 1117.57677 0.58541 0.00032771 0.20594 0.00011529 0.79135 0.000443 559.7959659367309 46.678 0.34528 46.678 46.436 46.781 0 35 15 3 0 0 0 0.025842 1 25487 25487 57.722 19.748 1 6522700 36423 1803 24193 24667 42919 42919 0.022688241263722375 LPTEQEVRF 9 Unmodified _LPTEQEVRF_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MSMS AL20221201_MKP_PDAC_01 4 559.797119140625 2 559.795663 1117.57677 NaN NaN NaN NaN NaN NaN NaN 52.569 1 46.835 46.335 47.335 -5.7345 0 0 0 0.027645 1 33186 33186 69.105 6.5322 1 36424 1803 24193 24667 42920 42920 0.022688241263722375 LPTETLQEL 9 Unmodified _LPTETLQEL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2842407226562 2 522.284597 1042.55464 0.34206 0.00017865 -0.6343 -0.00033129 -0.29225 -0.00015264 522.2842217235047 61.792 0.49922 61.792 61.572 62.072 0 66 21 4 0 0 0 0.012148 2 34500 34402;34500 74.423 13.065 1 41152000 36425 3290;6888 24194 24668 42921;42922 42922 0.03506599657953302 LPTETLQEL 9 Unmodified _LPTETLQEL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2847900390625 2 522.284597 1042.55464 0.86426 0.00045139 -0.1497 -7.8184E-05 0.71457 0.00037321 522.2844934320428 69.521 0.47269 63.345 63.071 63.544 -6.1757 65 24 3 0 0 0 0.00856 1 45269 45269 100.37 15.099 1 74626000 36426 3290;6888 24194 24668 42923 42923 0.03506599657953302 LPTFLLVLL 9 Unmodified _LPTFLLVLL_ 0 0 0 REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3 REV__nc|ENSG00000158296|Q8WWT9-2|SLC13A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.841796875 2 514.841354 1027.66815 1.3297 0.00068457 -0.25074 -0.00012909 1.0789 0.00055548 514.8412209599571 102.88 0.06208 96.707 96.674 96.736 -6.1757 32 17 2 0 0 0 0.013472 1 69013 69013 70.716 7.1527 1 7524200 + 36427 21425 24195 24669 42924 42924 0.15542739561669805 LPTFNSALHL 10 Unmodified _LPTFNSALHL_ 0 0 0 ENSG00000166828|ENST00000300061|SCNN1G ENSG00000166828|ENST00000300061|SCNN1G ENSG00000166828|ENST00000300061|SCNN1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8095703125 2 556.808574 1111.60259 3.4076 0.0018974 0.15546 8.6563E-05 3.563 0.0019839 556.8085878040285 97.646 0.57381 97.627 97.411 97.985 -0.018196 41 20 3 0 0 0 0.28721 1 54196 54196 32.786 0 1 26612000 36428 7536 24196 24670 42925 42925 0.051257183686630015 LPTFQSPEF 9 Unmodified _LPTFQSPEF_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENSG00000089006|ENST00000377759|SNX5;ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2666015625 2 533.266207 1064.51786 0.56318 0.00030033 -0.52895 -0.00028207 0.034231 1.8254E-05 533.266095152579 72.5 0.43657 72.024 71.772 72.209 -0.4761 58 20 4 0 0 0 0.018301 2 39704 39601;39704 65.235 29.108 1 26279000 36429 1506;13843 24197 24671 42926;42927 42927 -0.01181652167952052 LPTFQSPEF 9 Unmodified _LPTFQSPEF_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000474883.5_1_20:17934783-17949378:-|nuORF;ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENSG00000089006|ENST00000377759|SNX5;ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2652587890625 2 533.266207 1064.51786 0.92168 0.0004915 -0.4505 -0.00024024 0.47118 0.00025126 533.2658673450572 80.103 0.53991 73.928 73.612 74.152 -6.1757 85 32 3 0 0 0 0.011968 3 52625 52373;52497;52625 74.929 40.527 1 119070000 36430 1506;13843 24197 24671 42928;42929;42930 42930 -0.01181652167952052 LPTGEIVYF 9 Unmodified _LPTGEIVYF_ 0 0 0 ENST00000587804.1_1_19:46136252-46137743:-|nuORF;ENST00000588000.5_1_19:46124203-46142634:-|nuORF;ENSG00000125746|ENST00000245925|EML2;nc|ENSG00000125746|O95834-2|EML2;nc|ENSG00000125746|O95834-3|EML2 ENST00000587804.1_1_19:46136252-46137743:-|nuORF ENST00000587804.1_1_19:46136252-46137743:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.3013916015625 2 519.778951 1037.54335 1.0982 0.00057081 -1.6267 -0.0008455 -0.52848 -0.00027469 519.7788337736865 88.642 0.51904 82.466 82.26 82.779 -6.1757 51 28 2 0 0 0 0.19891 1 58570 58570 11.64 1.4569 1 11965000 36431 15639 24198 24672 42931 42931 0.02607822354457312 LPTGEYEFWI 10 Unmodified _LPTGEYEFWI_ 0 0 0 REV__ENSG00000057663|ENST00000369076|ATG5 REV__ENSG00000057663|ENST00000369076|ATG5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 627.2938842773438 2 627.805697 1253.59684 0.81684 0.00051282 -2.4567 -0.0015423 -1.6398 -0.0010295 627.805407226333 83.605 0.75575 77.429 76.964 77.72 -6.1757 78 39 3 0 0 0 0.23227 1 54764 54764 6.7232 2.1943 1 36688000 + 36432 17305 24199 24673 42932 42932 -0.01981424933683229 LPTGIPIVY 9 Unmodified _LPTGIPIVY_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1;nc|ENSG00000164708|P15259|PGAM2 ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.5757446289062 1 972.576445 971.569169 0.43279 0.00042092 -0.60225 -0.00058574 -0.16947 -0.00016482 972.5756634503595 83.067 0.43482 82.569 82.306 82.741 -0.49751 50 17 4 0 0 0 0.0077963 3 45474 45377;45426;45474 109.63 42.285 1 16351000 36433 8090 24200 24674 42933;42934;42935 42935 0.0822471659673738 LPTGIPIVY 9 Unmodified _LPTGIPIVY_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1;nc|ENSG00000164708|P15259|PGAM2 ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 972.5758666992188 1 972.576445 971.569169 1.6357 0.0015908 -1.8718 -0.0018205 -0.23615 -0.00022967 972.5750186798028 82.379 0.46651 82.441 82.197 82.664 0.061996 32 17 2 0 0 0 0.0077963 2 45546 45546;45646 109.63 45.393 1 35235000 36434 8090 24200 24674 42936;42937 42936 0.0822471659673738 LPTGIPIVY 9 Unmodified _LPTGIPIVY_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1;nc|ENSG00000164708|P15259|PGAM2 ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5774536132812 1 972.576445 971.569169 0.64181 0.00062421 -0.13024 -0.00012666 0.51158 0.00049755 972.5760952615512 90.404 0.86166 84.228 83.808 84.67 -6.1757 144 50 4 0 0 0 0.0012811 6 59897 59507;59623;59633;59765;59897;60015 137.59 59.601 1 192410000 36435 8090 24200 24674 42938;42939;42940;42941;42942;42943 42942 0.0822471659673738 LPTGIPIVY 9 Unmodified _LPTGIPIVY_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1;nc|ENSG00000164708|P15259|PGAM2 ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7918395996094 2 486.791861 971.569169 0.94834 0.00046164 -0.44915 -0.00021864 0.49919 0.000243 486.7912208652731 90.459 0.87679 84.283 83.826 84.703 -6.1757 129 51 3 0 0 0 0.03327 2 59622 59622;59889 53.576 21.459 1 171000000 36436 8090 24200 24674 42944;42945 42944 0.0822471659673738 LPTGLPLLV 9 Unmodified _LPTGLPLLV_ 0 0 0 nc|ENSG00000123612|Q8NER5-3|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C nc|ENSG00000123612|Q8NER5-3|ACVR1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.8033752441406 2 461.802229 921.589904 2.1614 0.00099812 -0.91099 -0.0004207 1.2504 0.00057742 461.80174275687125 94.756 0.43637 94.77 94.516 94.952 0.014252 28 16 2 0 0 0 0.023164 1 52615 52615 60.39 2.9182 1 3433200 36437 16166 24201 24675 42946 42946 0.12597306976419986 LPTGRSIAF 9 Unmodified _LPTGRSIAF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2780456542969 2 481.276909 960.539266 1.3488 0.00064915 -0.15444 -7.4327E-05 1.1944 0.00057483 481.2769175926005 54.236 0.47373 48.371 48.099 48.572 -5.8653 54 27 3 0 0 0 0.023481 2 34297 34297;34435 60.074 11.728 1 33510000 36438 3488 24202 24676 42947;42948 42947 0.05741777651417124 LPTHIWHFRYL 11 Unmodified _LPTHIWHFRYL_ 0 0 0 REV__ENSG00000166448|ENST00000339375|TMEM130 REV__ENSG00000166448|ENST00000339375|TMEM130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.9379272460938 3 494.93834 1481.79319 0.69388 0.00034343 -2.3972 -0.0011865 -1.7033 -0.00084305 495.2714529035846 46.033 0.20132 46.005 45.905 46.107 -0.028011 17 8 3 0 0 0 0.70147 1 24762 24762 4.1166 1.4854 1 2622400 + 36439 22120 24203 24677 42949 42949 0.07156424750724 LPTIAFAF 8 Unmodified _LPTIAFAF_ 0 0 0 ENSG00000111371|ENST00000398637|SLC38A1 ENSG00000111371|ENST00000398637|SLC38A1 ENSG00000111371|ENST00000398637|SLC38A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 879.4972534179688 1 879.497467 878.49019 1.5446 0.0013585 -0.84299 -0.00074141 0.70162 0.00061707 879.4970858739106 100.86 0.098106 94.685 94.635 94.734 -6.1757 7 5 2 0 0 0 0.1036 1 67583 67583 98.807 42.266 1 17317000 36440 2786 24204 24678 42950 42950 0.04608489362465207 LPTIFCNIVL 10 Unmodified _LPTIFCNIVL_ 0 0 0 ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4;nc|ENSG00000101333|Q15147-2|PLCB4;ENST00000464199.5_1_20:9351789-9459633:+|nuORF ENST00000492632.5_1_20:9288449-9449247:+|nuORF ENST00000492632.5_1_20:9288449-9449247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.21875 3 378.219344 1131.6362 0.68238 0.00025809 -0.40769 -0.0001542 0.27468 0.00010389 378.21909213744783 50.786 0.32849 50.372 50.15 50.479 -0.41351 42 15 4 0 0 0 0.68719 1 27318 27318 2.086 0 1 4801500 36441 1946 24205 24679 42951 42951 0.07565003816171156 LPTINKHSF 9 Unmodified _LPTINKHSF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8659057617188 3 352.86607 1055.57638 -0.13604 -4.8004E-05 -0.1404 -4.9541E-05 -0.27644 -9.7545E-05 352.8660969367497 35.258 0.39738 35.286 35.039 35.436 0.027405 27 18 2 0 0 0 0.030212 1 18607 18607 55.235 28.011 1 3184600 36442 7991 24206 24680 42952 42952 0.0508144919717779 LPTINKHSF 9 Unmodified _LPTINKHSF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8670349121094 3 352.86607 1055.57638 1.5579 0.00054972 -0.21473 -7.5772E-05 1.3431 0.00047394 352.86616506983745 39.479 0.40829 35.028 34.766 35.175 -4.4509 53 24 3 0 0 0 0.067618 1 23368 23368 40.725 16.935 1 18248000 36443 7991 24206 24680 42953 42953 0.0508144919717779 LPTIPLSAF 9 Unmodified _LPTIPLSAF_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7843017578125 2 479.784036 957.553519 1.9818 0.00095082 0.34496 0.00016551 2.3267 0.0011163 479.7840425980338 94.142 0.39092 94.156 93.932 94.323 0.014244 22 14 2 0 0 0 0.03327 1 52340 52340 53.576 11.481 1 1828800 36444 4209 24207 24681 42954 42954 0.07304430079705071 LPTIPLSAF 9 Unmodified _LPTIPLSAF_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 958.5662841796875 1 958.560795 957.553519 1.2163 0.0011659 -1.3099 -0.0012556 -0.093587 -8.9709E-05 958.5595899194353 100.09 0.17751 93.914 93.819 93.996 -6.1757 16 10 2 0 0 0 1.0251E-06 1 66833 66833 162.95 42.5 1 18989000 36445 4209 24207 24681 42955 42955 0.07304430079705071 LPTIPLSAF 9 Unmodified _LPTIPLSAF_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 ENSG00000130382|ENST00000252674|MLLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7851257324219 2 479.784036 957.553519 1.4492 0.0006953 2.8067 0.0013466 4.2558 0.0020419 479.7835709303848 100.08 0.19274 93.907 93.804 93.996 -6.1757 34 11 4 0 0 0 0.010877 1 66841 66841 77.984 29.638 1 40371000 36446 4209 24207 24681 42956 42956 0.07304430079705071 LPTKPGEYF 9 Unmodified _LPTKPGEYF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2774658203125 2 526.276575 1050.5386 0.60167 0.00031664 0.75184 0.00039567 1.3535 0.00071232 526.2768632009502 46.688 0.25463 46.688 46.544 46.799 0 17 11 2 0 0 0 0.047714 1 25519 25519 58.679 14.821 1 4581500 36447 16209;15895 24208 24682 42957 42957 0.015349382117165078 LPTKPGEYF 9 Unmodified _LPTKPGEYF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2774658203125 2 526.276575 1050.5386 0.56029 0.00029487 1.022 0.00053785 1.5823 0.00083272 526.2764788892887 47 0.35023 46.663 46.483 46.833 -0.33664 38 17 4 0 0 0 0.060956 1 25133 25133 53.833 13.875 1 16669000 36448 16209;15895 24208 24682 42958 42958 0.015349382117165078 LPTKQNEEF 9 Unmodified _LPTKQNEEF_ 0 0 0 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2797241210938 2 553.279846 1104.54514 -0.12771 -7.0658E-05 0.66297 0.00036681 0.53526 0.00029615 553.2801180005008 28.885 0.35969 28.885 28.723 29.082 0 43 17 3 0 0 0 0.013609 2 14906 14906;15002 70.332 33.826 1 11241000 36449 6551 24209 24683 42959;42960 42959 -0.0029516862757645868 LPTKQNEEF 9 Unmodified _LPTKQNEEF_ 0 0 0 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2813720703125 2 553.279846 1104.54514 0.73797 0.00040831 0.25043 0.00013856 0.98841 0.00054687 553.280059476369 32.666 0.39194 28.81 28.582 28.974 -3.8562 38 20 2 0 0 0 0.0099157 2 18567 18567;18685 80.676 31.072 1 37431000 36450 6551 24209 24683 42961;42962 42961 -0.0029516862757645868 LPTKSLVAL 9 Unmodified _LPTKSLVAL_ 0 0 0 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.3059387207031 2 471.305136 940.595718 1.0756 0.00050693 0.35334 0.00016653 1.4289 0.00067346 471.30544038847376 60.901 0.2177 54.753 54.647 54.865 -6.1478 14 11 2 0 0 0 0.0081887 1 39192 39192 93.166 0 1 17007000 36451 8791 24210 24684 42963 42963 0.12304405488100656 LPTKSLVAL 9 Unmodified _LPTKSLVAL_ 0 0 0 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 ENSG00000178974|ENST00000313833|FBXO34 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 471.305136 940.595718 0.23524 0.00011087 0.21212 9.9974E-05 0.44736 0.00021084 471.3051354228127 54.969 0.33529 54.9 54.703 55.038 -0.068737 0.049001 -0.00027099 NaN 93.166 30 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3361300 36452 8791 24210 24684 0.12304405488100656 LPTLASNVM 9 Oxidation (M) _LPTLASNVM(Oxidation (M))_ LPTLASNVM(1) LPTLASNVM(78) 0 0 1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2551879882812 2 481.254785 960.495018 0.59079 0.00028432 -0.56345 -0.00027116 0.027332 1.3154E-05 481.2547436102448 47.472 0.70329 47.472 47.149 47.852 0 60 32 3 0 0 0 0.010877 1 26026 26026 77.984 41.94 1 6156900 36453 840 24211 24685 42964 42964 127 0.013190054429401243 LPTLASNVM 9 Oxidation (M) _LPTLASNVM(Oxidation (M))_ LPTLASNVM(1) LPTLASNVM(93) 0 0 1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2560424804688 2 481.254785 960.495018 0.71405 0.00034364 -0.24945 -0.00012005 0.4646 0.00022359 481.25471888126015 47.729 0.41015 47.377 47.165 47.575 -0.3526 62 19 4 0 0 0 0.0082281 2 25539 25539;25642 92.822 54.848 1 21204000 36454 840 24211 24685 42965;42966 42965 127 0.013190054429401243 LPTLASNVM 9 Oxidation (M) _LPTLASNVM(Oxidation (M))_ LPTLASNVM(1) LPTLASNVM(71) 0 0 1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2559204101562 2 481.254785 960.495018 1.141 0.00054911 0.10433 5.0209E-05 1.2453 0.00059932 481.2547821783316 54.988 0.42874 49.081 48.857 49.286 -5.9071 59 26 3 0 0 0 0.013323 1 34850 34850 71.134 31.176 1 30867000 36455 840 24211 24685 42967 42967 127 0.013190054429401243 LPTLASNVM 9 Unmodified _LPTLASNVM_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2581481933594 2 473.257328 944.500103 0.40223 0.00019036 -0.019272 -9.1207E-06 0.38295 0.00018124 473.2574234965847 63.551 0.20019 63.065 62.927 63.127 -0.48617 16 8 3 0 0 0 0.23158 1 34659 34659 20.454 6.9457 1 1427600 36456 840 24211 24686 42968 42968 0.025633093055489553 LPTLEKLVA 9 Unmodified _LPTLEKLVA_ 0 0 0 nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR nc|ENSG00000170820|P23945-3|FSHR nc|ENSG00000170820|P23945-3|FSHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3114013671875 2 492.310418 982.606283 0.77186 0.00038 -0.42426 -0.00020887 0.3476 0.00017113 492.3102513744265 76.02 0.21646 69.844 69.769 69.986 -6.1757 18 11 2 0 0 0 0.12424 1 49775 49775 30.637 5.2372 1 5981200 36457 8027 24212 24687 42969 42969 0.11428388142508084 LPTLIGLTLL 10 Unmodified _LPTLIGLTLL_ 0 0 0 REV__ENST00000569279.1_1_17:72602458-72602677:+|nuORF REV__ENST00000569279.1_1_17:72602458-72602677:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2813110351562 2 527.349543 1052.68453 0.2529 0.00013337 1.4921 0.00078687 1.745 0.00092024 527.3503229977526 61.546 0.33647 61.513 61.374 61.711 -0.032787 36 16 3 0 0 0 0.2342 1 33587 33587 7.2892 0 1 7948500 + 36458 28959 24213 24688 42970 42970 0.1602982072774921 LPTLLGTKY 9 Unmodified _LPTLLGTKY_ 0 0 0 ENST00000216181.9_1_22:36677912-36678251:-|nuORF ENST00000216181.9_1_22:36677912-36678251:-|nuORF ENST00000216181.9_1_22:36677912-36678251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3032531738281 2 503.302593 1004.59063 0.77535 0.00039024 -0.32997 -0.00016607 0.44539 0.00022416 503.3024647024257 57.173 0.31952 57.107 56.978 57.297 -0.066036 32 15 3 0 0 0 0.41742 1 31192 31192 11.64 0.81637 1 12715000 36459 11004 24214 24689 42971 42971 0.08852101625473097 LPTLPSQVY 9 Unmodified _LPTLPSQVY_ 0 0 0 nc|ENSG00000087589|Q9NQ75-3|CASS4;nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4 nc|ENSG00000087589|Q9NQ75-3|CASS4 nc|ENSG00000087589|Q9NQ75-3|CASS4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7510070800781 2 509.2844 1016.55425 -0.16107 -8.2031E-05 2.9044 0.0014791 2.7433 0.0013971 509.28460546489623 65.618 0.31354 65.133 65 65.314 -0.48428 32 13 3 0 0 0 0.16785 1 35827 35827 23.148 6.2061 1 1226300 36460 1474 24215 24690 42972 42972 0.04663224728756177 LPTLQTELL 9 Unmodified _LPTLQTELL_ 0 0 0 REV__nc|ENSG00000250878|A6NDL7|METTL21EP REV__nc|ENSG00000250878|A6NDL7|METTL21EP MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3052978515625 2 514.305332 1026.59611 1.0586 0.00054443 0.81399 0.00041864 1.8726 0.00096307 514.3055300919173 50.253 0.46091 44.714 44.483 44.944 -5.5391 58 29 3 0 0 0 0.05447 1 31372 31372 43.858 5.7071 1 29233000 + 36461 29979 24216 24691 42973 42973 0.08387780417274371 LPTLVPWYF 9 Unmodified _LPTLVPWYF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MSMS AL20221201_MKP_PDAC_01 4 568.31201171875 2 568.312961 1134.61137 NaN NaN NaN NaN NaN NaN NaN 101.99 1 95.812 95.312 96.312 -6.1757 0 0 0 0.026323 1 68459 68459 70.716 52.569 1 36462 1685 24217 24692 42974 42974 0.049446920051195775 LPTMLPIT 8 Unmodified _LPTMLPIT_ 0 0 0 REV__nc|ENSG00000168824|P42857-2|NSG1 REV__nc|ENSG00000168824|P42857-2|NSG1 MSMS AL20221201_MKP_PDAC_01 4 443.2596740722656 2 443.259339 884.504126 NaN NaN NaN NaN NaN NaN NaN 100.71 1 94.53 94.03 95.03 -6.1757 0 0 0 0.73801 1 67416 67416 26.341 9.2547 1 + 36463 22347 24218 24693 42975 42975 0.05725398799256709 LPTMSSRLIY 10 Unmodified _LPTMSSRLIY_ 0 0 0 ENST00000495881.1_1_1:156255017-156255866:+|nuORF;ENSG00000163472|ENST00000405535|TMEM79 ENST00000495881.1_1_1:156255017-156255866:+|nuORF ENST00000495881.1_1_1:156255017-156255866:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2189025878906 3 394.218003 1179.63218 -0.35424 -0.00013965 2.1369 0.00084242 1.7827 0.00070277 394.2190525596448 23.18 0.29058 23.18 23.036 23.326 0 21 14 2 0 0 0 0.70951 1 11798 11798 0.77653 0.27058 1 595710 36464 6998 24219 24694 42976 42976 0.04954914322502191 LPTNPGEQF 9 Unmodified _LPTNPGEQF_ 0 0 0 ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF ENSG00000114446|ENST00000264538|IFT57 ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7486267089844 2 501.748182 1001.48181 0.31222 0.00015666 -0.15905 -7.9805E-05 0.15317 7.685E-05 501.74803237253724 45.507 0.2678 45.507 45.396 45.664 0 20 14 2 0 0 0 0.0090948 1 24816 24816 85.272 47.298 1 6850600 36465 3040 24220 24695 42977 42977 -0.018871093448069587 LPTNTTKNK 9 Unmodified _LPTNTTKNK_ 0 0 0 REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF REV__ENST00000360943.9_1_17:47004499-47005111:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2923583984375 2 508.790381 1015.56621 0.66402 0.00033785 1.9094 0.00097149 2.5734 0.0013093 509.292460215058 64.994 1.1313 58.818 58.347 59.478 -6.1757 144 63 3 0 0 0 0.10734 1 42484 42484 32.305 5.9642 1 41451000 + 36466 25915 24221 24696 42978 42978 0.05904841471931377 LPTNVSPQAY 10 Unmodified _LPTNVSPQAY_ 0 0 0 REV__ENSG00000167193|ENST00000300574|CRK REV__ENSG00000167193|ENST00000300574|CRK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8211669921875 2 545.282389 1088.55022 0.28331 0.00015449 2.6155 0.0014262 2.8988 0.0015807 545.2842952571823 71.326 0.33847 70.849 70.682 71.02 -0.47736 31 14 3 0 0 0 0.22636 1 38996 38996 17.113 1.8644 1 1920300 + 36467 22190 24222 24697 42979 42979 0.009491352350551097 LPTNYFLGY 9 Unmodified _LPTNYFLGY_ 0 0 0 REV__ENSG00000163378|ENST00000383701|EOGT REV__ENSG00000163378|ENST00000383701|EOGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7734375 2 544.276575 1086.5386 0.25534 0.00013898 -3.9706 -0.0021611 -3.7153 -0.0020221 544.2770083085684 86.271 0.31039 85.767 85.595 85.906 -0.50318 26 12 3 0 0 0 0.48152 1 47186 47186 8.5933 0.68312 1 611280 + 36468 21755 24223 24698 42980 42980 -0.0012106178828616976 LPTNYFLGY 9 Unmodified _LPTNYFLGY_ 0 0 0 REV__ENSG00000163378|ENST00000383701|EOGT REV__ENSG00000163378|ENST00000383701|EOGT MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.276575 1086.5386 0.25534 0.00013898 -3.9706 -0.0021611 -3.7153 -0.0020221 544.2770083085684 86.271 0.31039 85.767 85.595 85.906 -0.50318 0 0 NaN 8.5933 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 611280 + 36469 21755 24223 24698 -0.0012106178828616976 LPTPKTFVL 9 Unmodified _LPTPKTFVL_ 0 0 0 ENSG00000184661|ENST00000330560|CDCA2 ENSG00000184661|ENST00000330560|CDCA2 ENSG00000184661|ENST00000330560|CDCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3136901855469 2 508.312961 1014.61137 1.2391 0.00062986 -2.0258 -0.0010298 -0.78672 -0.0003999 508.31312631787785 66.353 0.50204 66.363 66.08 66.582 0.0095673 75 24 4 0 0 0 0.013609 2 36342 36342;36452 70.332 17.725 1 17447000 36470 9281 24224 24699 42981;42982 42981 0.10464692005132292 LPTPKYHHL 9 Unmodified _LPTPKYHHL_ 0 0 0 REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3104248046875 2 553.311284 1104.60801 0.81613 0.00045158 0.052883 2.9261E-05 0.86902 0.00048084 553.3106515475168 78.06 0.66388 71.884 71.409 72.073 -6.1757 66 37 3 0 0 0 0.16226 1 51187 51187 26.884 1.4843 1 26809000 + 36471 18890 24225 24700 42983 42983 0.059894419511238084 LPTPPSRSPLL 11 Unmodified _LPTPPSRSPLL_ 0 0 0 REV__ENSG00000130202|ENST00000252483|NECTIN2 REV__ENSG00000130202|ENST00000252483|NECTIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3521118164062 2 589.350606 1176.68666 0.30755 0.00018126 0.53821 0.00031719 0.84576 0.00049845 589.3509101572083 48.951 0.28786 48.579 48.446 48.734 -0.37172 40 14 4 0 0 0 0.5229 1 26375 26375 15.248 0 1 8867000 + 36472 19704 24226 24701 42984 42984 0.10538249465571425 LPTPSDIFVSY 11 Unmodified _LPTPSDIFVSY_ 0 0 0 nc|ENSG00000132906|P55211-2|CASP9;nc|ENSG00000132906|P55211-4|CASP9;ENSG00000132906|ENST00000333868|CASP9 nc|ENSG00000132906|P55211-2|CASP9 nc|ENSG00000132906|P55211-2|CASP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.815673828125 2 619.818804 1237.62306 NaN NaN NaN NaN NaN NaN NaN 85.489 1 84.987 84.487 85.487 -0.5015 0 0 0 0.18984 1 46784 46784 39.95 7.9122 1 36473 4462 24227 24702 42985 42985 0.013748442378073378 LPTPSDIFVSY 11 Unmodified _LPTPSDIFVSY_ 0 0 0 nc|ENSG00000132906|P55211-2|CASP9;nc|ENSG00000132906|P55211-4|CASP9;ENSG00000132906|ENST00000333868|CASP9 nc|ENSG00000132906|P55211-2|CASP9 nc|ENSG00000132906|P55211-2|CASP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.82080078125 2 619.818804 1237.62306 1.0296 0.00063817 0.65391 0.0004053 1.6835 0.0010435 619.8190180858719 94.34 0.65698 88.165 87.806 88.463 -6.1757 89 37 3 0 0 0 0.00047726 4 62472 62329;62349;62472;62606 88.954 30.275 1 21802000 36474 4462 24227 24702 42986;42987;42988;42989 42988 0.013748442378073378 LPTPTVVHF 9 Unmodified _LPTPTVVHF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7876892089844 2 505.78711 1009.55967 0.3218 0.00016276 0.38814 0.00019632 0.70995 0.00035908 505.78724028397414 62.216 0.44618 61.729 61.51 61.956 -0.48764 56 20 4 0 0 0 0.019979 1 33888 33888 63.563 16.642 1 19019000 36475 4346 24228 24703 42990 42990 0.05526948311239721 LPTPTVVHF 9 Unmodified _LPTPTVVHF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7867736816406 2 505.78711 1009.55967 0.40062 0.00020263 -0.055029 -2.7833E-05 0.34559 0.00017479 505.7870186577578 61.87 0.4339 61.838 61.59 62.024 -0.032787 62 21 4 0 0 0 0.013472 2 33710 33710;33814 70.716 26.309 1 53478000 36476 4346 24228 24703 42991;42992 42991 0.05526948311239721 LPTPTVVHF 9 Unmodified _LPTPTVVHF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7864685058594 2 505.78711 1009.55967 0.56597 0.00028626 -0.247 -0.00012493 0.31897 0.00016133 505.7873023209014 67.763 0.5835 61.588 61.288 61.871 -6.1757 74 33 3 0 0 0 0.010877 2 44043 44043;44171 77.984 31.903 1 140090000 36477 4346 24228 24703 42993;42994 42993 0.05526948311239721 LPTQIYPLP 9 Unmodified _LPTQIYPLP_ 0 0 0 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 ENSG00000204217|ENST00000374580|BMPR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7315673828125 2 521.302593 1040.59063 0.3527 0.00018387 -0.98845 -0.00051528 -0.63575 -0.00033142 521.3020361697853 64.544 0.59773 64.544 64.168 64.765 0 40 28 2 0 0 0 0.203 1 36121 36121 9.3474 4.1168 1 1314700 36478 10252 24229 24704 42995 42995 0.0719610162545905 LPTQLLNSY 9 Unmodified _LPTQLLNSY_ 0 0 0 nc|ENSG00000180694|Q6YI46-2|TMEM64;ENSG00000180694|ENST00000458549|TMEM64 nc|ENSG00000180694|Q6YI46-2|TMEM64 nc|ENSG00000180694|Q6YI46-2|TMEM64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7875366210938 2 524.787307 1047.56006 -0.039711 -2.084E-05 -0.60269 -0.00031629 -0.6424 -0.00033713 524.7875495690072 66.021 0.17441 65.537 65.434 65.608 -0.48323 11 7 2 0 0 0 0.171 1 36036 36036 34.402 14.963 1 2565100 36479 8918 24230 24705 42996 42996 0.038183232404207956 LPTRHSLSRL 10 Unmodified _LPTRHSLSRL_ 0 0 0 REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF REV__ENST00000470601.5_1_3:51977371-51978822:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.351318359375 2 590.351471 1178.68839 0.78819 0.00046531 -0.44054 -0.00026007 0.34766 0.00020524 590.3511372690965 57.972 0.21551 57.906 57.795 58.011 -0.066036 19 10 3 0 0 0 0.52097 1 31566 31566 15.248 3.0078 1 2920200 + 36480 27481 24231 24706 42997 42997 0.10619303274188496 LPTRRLVQV 9 Unmodified _LPTRRLVQV_ 0 0 0 REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4 REV__nc|ENSG00000165966|Q6ZMN7-4|PDZRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3468017578125 2 541.345658 1080.67676 0.30903 0.00016729 1.5523 0.00084031 1.8613 0.0010076 541.3466248063248 51.987 0.29549 51.928 51.751 52.047 -0.058918 18 13 2 0 0 0 0.54213 1 28138 28138 7.9102 0 1 1035500 + 36481 22069 24232 24707 42998 42998 0.139651062508392 LPTRSDMICGY 11 Carbamidomethyl (C) _LPTRSDMIC(Carbamidomethyl (C))GY_ LPTRSDMIC(1)GY LPTRSDMIC(48)GY 0 1 0 ENSG00000106144|ENST00000310447|CASP2;ENST00000472067.1_1_7:143000848-143002161:+|nuORF;ENST00000493642.5_1_7:142991831-143002161:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.80419921875 2 656.804848 1311.59514 0.89893 0.00059042 -0.69373 -0.00045565 0.20519 0.00013477 656.8047449001807 50.468 0.27567 44.929 44.775 45.051 -5.5391 32 17 3 0 0 0 0.063019 1 31615 31615 48.073 35.03 1 20706000 36482 2403 24233 24708 42999 42999 238 -0.04819125285575865 LPTRVIVVW 9 Unmodified _LPTRVIVVW_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX3|p.Q2291H|1|0.16|ENSG00000140836|chr16:72795809-72795809|C/A|missense_variant;ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 nc|ENSG00000091656|Q86UP3|ZFHX4;ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MSMS AL20221201_MKP_PDAC_01 4 541.84033203125 2 541.839677 1081.6648 NaN NaN NaN NaN NaN NaN NaN 93.248 1 87.072 86.572 87.572 -6.1757 0 0 0 0.068588 1 61709 61709 47.594 29.459 1 36483 5274;1595 24234 24709 43000 43000 0.1272348950765263 LPTSMGQHGP 10 Unmodified _LPTSMGQHGP_ 0 0 0 ENSG00000104689|ENST00000221132|TNFRSF10A;TNFRSF10A|p.E344Afs*8|1|0.08|ENSG00000104689|chr8:23197166-23197188|CAGCCTCCTCCTCTGAGACCCTT/-|frameshift_variant ENSG00000104689|ENST00000221132|TNFRSF10A ENSG00000104689|ENST00000221132|TNFRSF10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7470092773438 2 512.747659 1023.48076 0.25795 0.00013227 -0.7622 -0.00039082 -0.50425 -0.00025855 512.7473497158004 80.656 0.30352 80.656 80.495 80.799 0 22 14 2 0 0 0 0.6966 1 44780 44780 3.2813 0.97858 1 862410 36484 2222 24235 24710 43001 43001 -0.03003646985348496 LPTSRQMKF 9 Unmodified _LPTSRQMKF_ 0 0 0 ENST00000379391.7_2_12:57453765-57454582:-|nuORF ENST00000379391.7_2_12:57453765-57454582:-|nuORF ENST00000379391.7_2_12:57453765-57454582:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7955322265625 2 554.302601 1106.59065 0.081323 4.5077E-05 3.5279 0.0019555 3.6092 0.0020006 554.3042902412858 22.92 0.22432 22.92 22.832 23.056 0 19 12 2 0 0 0 0.21367 1 11708 11708 4.756 0.42677 1 1131700 36485 12568 24236 24711 43002 43002 0.041617783538185904 LPTSSYLYGF 10 Unmodified _LPTSSYLYGF_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|62|1|anti-sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|62|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.2879028320312 2 574.28714 1146.55973 0.31386 0.00018024 1.7022 0.00097758 2.0161 0.0011578 574.2880437883496 73.503 0.4614 73.547 73.361 73.822 0.043983 28 20 2 0 0 0 0.39779 1 40506 40506 21.747 6.9084 1 1737300 + 36486 30115 24237 24712 43003 43003 -0.00769096479439213 LPTSVCLWF 9 Unmodified _LPTSVCLWF_ 0 0 0 REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 REV__nc|ENSG00000173662|Q7RTX1-3|TAS1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.277587890625 2 533.275521 1064.53649 0.22557 0.00012029 1.993 0.0010628 2.2186 0.0011831 533.2769611378278 61.786 0.24428 61.786 61.663 61.907 0 18 10 2 0 0 0 0.078417 1 34465 34465 38.151 0 1 3180800 + 36487 29790 24238 24713 43004 43004 0.00680186202225741 LPTSVQVTI 9 Unmodified _LPTSVQVTI_ 0 0 0 ENSG00000186532|ENST00000305513|SMYD4;ENST00000573937.5_1_17:1707859-1733034:-|nuORF ENSG00000186532|ENST00000305513|SMYD4 ENSG00000186532|ENST00000305513|SMYD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2854614257812 2 479.2844 956.554247 1.1828 0.0005669 0.19965 9.5691E-05 1.3825 0.00066259 479.28444597125383 71.036 0.29917 64.86 64.726 65.026 -6.1757 16 14 2 0 0 0 0.0082485 1 46456 46456 96.285 17.557 1 23310000 36488 9483 24239 24714 43005 43005 0.07423224728779587 LPTSVTVEI 9 Unmodified _LPTSVTVEI_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD;chr4:56216273-56272321|149|13.27|0.41|5.02|+|ENST00000504228|CRACD,CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7767944335938 2 479.776408 957.538263 0.47184 0.00022638 -1.0472 -0.0005024 -0.57531 -0.00027602 479.7762892524233 66.769 0.33572 66.769 66.576 66.912 0 24 15 3 0 0 0 0.052168 1 37214 37214 44.407 8.3628 1 1896400 36489 113 24240 24715 43006 43006 0.057795184918632 LPTSVTVEI 9 Unmodified _LPTSVTVEI_ 0 0 0 ENSG00000109265|ENST00000682029|CRACD;chr4:56216273-56272321|149|13.27|0.41|5.02|+|ENST00000504228|CRACD,CRACD ENSG00000109265|ENST00000682029|CRACD ENSG00000109265|ENST00000682029|CRACD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.776123046875 2 479.776408 957.538263 NaN NaN NaN NaN NaN NaN NaN 67.266 1 66.784 66.284 67.284 -0.48218 0 0 0 0.33856 1 36747 36747 23.148 5.0021 1 36490 113 24240 24715 43007 43007 0.057795184918632 LPTTDHPIL 9 Unmodified _LPTTDHPIL_ 0 0 0 REV__ENSG00000161692|ENST00000315005|DBF4B REV__ENSG00000161692|ENST00000315005|DBF4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.6120300292969 2 503.782025 1005.5495 0.18314 9.2263E-05 -2.0236 -0.0010195 -1.8405 -0.0009272 503.78150586292116 38.526 0.20879 38.543 38.394 38.603 0.01704 13 9 2 0 0 0 0.18118 1 20510 20510 12.532 6.7997 1 1819600 + 36491 21607 24241 24716 43008 43008 0.04694340586001999 LPTTLLVGF 9 Unmodified _LPTTLLVGF_ 0 0 0 nc|ENSG00000173264|Q96N19|GPR137;nc|ENSG00000173264|Q96N19-4|GPR137;nc|ENSG00000173264|Q96N19-5|GPR137;nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137 nc|ENSG00000173264|Q96N19|GPR137 nc|ENSG00000173264|Q96N19|GPR137 MSMS AL20221201_MKP_PDAC_01 4 480.7916259765625 2 480.791861 959.569169 NaN NaN NaN NaN NaN NaN NaN 100.66 1 94.485 93.985 94.985 -6.1757 0 0 0 0.043758 1 67369 67369 60.39 22.238 1 36492 16389 24242 24717 43009 43009 0.08776716596753431 LPTVERDYYNQ 11 Unmodified _LPTVERDYYNQ_ 0 0 0 REV__ENST00000559785.5_1_15:77324735-77329514:+|nuORF REV__ENST00000559785.5_1_15:77324735-77329514:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5612487792969 3 466.561375 1396.66229 -0.28008 -0.00013068 0.029739 1.3875E-05 -0.25034 -0.0001168 466.5613095053988 51.412 0.29981 50.998 50.856 51.156 -0.41351 42 15 3 0 0 0 0.63851 1 27798 27798 4.7159 0.30977 1 24346000 + 36493 20464 24243 24718 43010 43010 -0.02017055478609109 LPTVGLVSPI 10 Unmodified _LPTVGLVSPI_ 0 0 0 nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1 nc|ENSG00000148516|P37275-3|ZEB1 nc|ENSG00000148516|P37275-3|ZEB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3111877441406 2 498.310418 994.606283 2.0501 0.0010216 -0.38618 -0.00019244 1.6639 0.00082912 498.31012715907553 62.787 0.55851 56.611 56.422 56.98 -6.1757 58 28 3 0 0 0 0.01132 1 40608 40608 85.272 8.4472 1 22011000 36494 5942 24244 24719 43011 43011 0.1087638814251477 LPTVMAYFL 9 Unmodified _LPTVMAYFL_ 0 0 0 REV__ENSG00000258453|ENST00000556246|OR11H2 REV__ENSG00000258453|ENST00000556246|OR11H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7877807617188 2 527.785721 1053.55689 1.4791 0.00078063 0.12493 6.5938E-05 1.604 0.00084657 527.7860610274289 81.466 0.78763 81.526 81.165 81.952 0.059929 58 30 3 0 0 0 0.48152 1 45141 45141 8.5933 1.8701 1 4198400 + 36495 19726 24245 24720 43012 43012 0.03225356862071749 LPTYTQTLREL 11 Unmodified _LPTYTQTLREL_ 0 0 0 ENSG00000197768|ENST00000412566|STPG3;nc|ENSG00000197768|Q8N7X2-3|STPG3;nc|ENSG00000197768|Q8N7X2|STPG3;nc|ENSG00000197768|Q8N7X2-1|STPG3 ENSG00000197768|ENST00000412566|STPG3 ENSG00000197768|ENST00000412566|STPG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.8692626953125 2 667.86936 1333.72417 1.085 0.00072463 -1.2427 -0.00082996 -0.15771 -0.00010533 668.3699424843137 57.995 0.21551 57.928 57.795 58.011 -0.066036 25 10 3 0 0 0 0.50515 1 31560 31560 16.149 2.2431 1 5996000 36496 10001 24246 24721 43013 43013 0.0706529594051517 LPVAESPDM 9 Oxidation (M) _LPVAESPDM(Oxidation (M))_ LPVAESPDM(1) LPVAESPDM(89) 0 0 1 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7286987304688 2 487.7286 973.442648 -0.1029 -5.0188E-05 0.36511 0.00017808 0.26221 0.00012789 487.7288936594451 31.719 0.43785 31.719 31.482 31.92 0 71 21 4 0 0 0 0.0086179 2 16454 16454;16552 89.427 41.081 1 19200000 36497 4697 24247 24722 43014;43015 43014 852 -0.04513577690681814 LPVAESPDM 9 Oxidation (M) _LPVAESPDM(Oxidation (M))_ LPVAESPDM(1) LPVAESPDM(64) 0 0 1 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4495239257812 1 974.449924 973.442648 -0.18229 -0.00017764 0.85809 0.00083616 0.6758 0.00065853 974.4505856718237 31.679 0.27929 31.679 31.58 31.86 0 24 13 2 0 0 0 0.019303 2 16484 16484;16586 64.236 48.389 1 1067800 36498 4697 24247 24722 43016;43017 43016 852 -0.04513577690681814 LPVAESPDM 9 Oxidation (M) _LPVAESPDM(Oxidation (M))_ LPVAESPDM(1) LPVAESPDM(89) 0 0 1 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.729248046875 2 487.7286 973.442648 1.1334 0.00055279 -1.0861 -0.00052971 0.047336 2.3087E-05 487.72839730121956 37.819 0.52951 33.45 33.22 33.75 -4.3689 83 31 3 0 0 0 0.0086179 2 22132 22132;22255 101.72 53.376 1 55583000 36499 4697 24247 24722 43018;43019 43018 852 -0.04513577690681814 LPVAESPDM 9 Oxidation (M) _LPVAESPDM(Oxidation (M))_ LPVAESPDM(1) LPVAESPDM(160) 0 0 1 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.4505615234375 1 974.449924 973.442648 0.81173 0.00079099 -0.98009 -0.00095505 -0.16837 -0.00016406 974.4495610106154 37.795 0.30152 33.426 33.334 33.636 -4.3689 28 17 2 0 0 0 1.0251E-06 2 22324 22195;22324 162.95 124.98 1 5962900 36500 4697 24247 24722 43020;43021 43021 852 -0.04513577690681814 LPVAESPDM 9 Unmodified _LPVAESPDM_ 0 0 0 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7319641113281 2 479.731143 957.447733 NaN NaN NaN NaN NaN NaN NaN 44.455 1 44.455 43.955 44.955 0 0 0 0 0.071041 1 24187 24187 50.855 29.108 1 36501 4697 24247 24723 43022 43022 -0.03269273828072983 LPVAESPDM 9 Unmodified _LPVAESPDM_ 0 0 0 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2326049804688 2 479.731143 957.447733 0.80478 0.00038608 -0.72205 -0.00034639 0.082727 3.9687E-05 479.7309602737369 52.38 0.39519 46.646 46.422 46.817 -5.7345 47 22 3 0 0 0 0.016184 2 32964 32964;33092 67.344 33.241 1 72377000 36502 4697 24247 24723 43023;43024 43023 -0.03269273828072983 LPVAKDVSY 9 Unmodified _LPVAKDVSY_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2772827148438 2 496.276575 990.538597 0.48469 0.00024054 0.19243 9.5498E-05 0.67711 0.00033604 496.2766146264022 36.915 0.34282 36.915 36.754 37.097 0 53 16 4 0 0 0 0.011291 2 19565 19565;19674 76.825 23.32 1 50218000 36503 7915 24248 24724 43025;43026 43025 0.04294938211717181 LPVAKDVSY 9 Unmodified _LPVAKDVSY_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2772521972656 2 496.276575 990.538597 -0.15351 -7.6183E-05 1.2861 0.00063827 1.1326 0.00056209 496.2773592633814 37.267 0.26848 36.995 36.846 37.114 -0.27133 21 10 3 0 0 0 0.18144 1 19567 19567 24.991 6.8446 1 3941400 36504 7915 24248 24724 43027 43027 0.04294938211717181 LPVAKDVSY 9 Unmodified _LPVAKDVSY_ 0 0 0 ENST00000475550.5_1_2:64069329-64114799:+|nuORF;nc|ENSG00000169764|Q16851-2|UGP2;ENSG00000169764|ENST00000337130|UGP2 ENST00000475550.5_1_2:64069329-64114799:+|nuORF ENST00000475550.5_1_2:64069329-64114799:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2772521972656 2 496.276575 990.538597 1.1052 0.00054847 -0.27096 -0.00013447 0.83421 0.000414 496.27634904965396 42.583 0.45858 37.899 37.648 38.107 -4.6846 87 30 4 0 0 0 0.033587 2 25627 25627;25753 53.404 15.228 1 156980000 36505 7915 24248 24724 43028;43029 43028 0.04294938211717181 LPVALDKHIL 10 Unmodified _LPVALDKHIL_ 0 0 0 ENSG00000087302|ENST00000261700|RTRAF;ENST00000427559.1_1_2:112698001-112698598:-|nuORF ENSG00000087302|ENST00000261700|RTRAF ENSG00000087302|ENST00000261700|RTRAF MSMS AL20221201_MKP_PDAC_01 4 373.5691528320312 3 373.569253 1117.68593 NaN NaN NaN NaN NaN NaN NaN 78.094 1 71.919 71.419 72.419 -6.1757 0 0 0 0.57148 1 51105 51105 22.775 7.8178 1 36506 1466 24249 24725 43030 43030 0.13179454816531688 LPVALQTRL 9 Unmodified _LPVALQTRL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.8224487304688 2 505.821484 1009.62842 0.02137 1.0809E-05 -0.27914 -0.00014119 -0.25777 -0.00013038 505.82158191925276 57.641 0.20297 57.151 57.003 57.206 -0.48974 14 9 2 0 0 0 0.05483 1 31314 31314 43.772 3.8227 1 3678300 36507 2017 24250 24726 43031 43031 0.1239861261092301 LPVALQTRL 9 Unmodified _LPVALQTRL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8216247558594 2 505.821484 1009.62842 0.86749 0.0004388 -0.47129 -0.00023839 0.39621 0.00020041 505.82124255974406 57.257 0.39943 57.191 56.998 57.397 -0.066036 59 19 4 0 0 0 0.017075 2 31110 31110;31209 66.457 18.708 1 97104000 36508 2017 24250 24726 43032;43033 43032 0.1239861261092301 LPVALQTRL 9 Unmodified _LPVALQTRL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1;nc|ENSG00000102103|O60828-10|PQBP1;nc|ENSG00000102103|O60828-9|PQBP1;ENST00000486150.5_1_X:48755780-48758817:+|nuORF;nc|ENSG00000102103|O60828-8|PQBP1;nc|ENSG00000102103|O60828-7|PQBP1;nc|ENSG00000102103|O60828-6|PQBP1;ENST00000470062.5_1_X:48755362-48760011:+|nuORF;ENST00000472742.5_1_X:48755271-48760011:+|nuORF;nc|ENSG00000102103|O60828-3|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.822998046875 2 505.821484 1009.62842 0.78062 0.00039486 -0.049309 -2.4942E-05 0.73131 0.00036991 505.8215239193547 63.119 0.91068 56.944 56.653 57.564 -6.1757 129 49 3 0 0 0 0.023481 3 40969 40691;40827;40969 60.074 15.153 1 231560000 36509 2017 24250 24726 43034;43035;43036 43036 0.1239861261092301 LPVAPGPEL 9 Unmodified _LPVAPGPEL_ 0 0 0 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.7608337402344 2 446.760561 891.506569 0.73522 0.00032847 0.57698 0.00025777 1.3122 0.00058624 446.7607478040439 60.152 0.36019 60.152 59.962 60.322 0 34 15 3 0 0 0 0.068777 1 33556 33556 40.449 8.3316 1 2586200 36510 7800 24251 24727 43037 43037 0.05647570528560664 LPVAPGPEL 9 Unmodified _LPVAPGPEL_ 0 0 0 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 ENSG00000168792|ENST00000307201|ABHD15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 446.760561 891.506569 -0.1888 -8.435E-05 -0.58512 -0.00026141 -0.77393 -0.00034576 446.7600057148012 60.705 0.13969 60.215 60.11 60.249 -0.48932 0.031401 -0.00080569 NaN 40.449 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 983220 36511 7800 24251 24727 0.05647570528560664 LPVATRLEL 9 Unmodified _LPVATRLEL_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.313232421875 2 506.313492 1010.61243 -0.68933 -0.00034902 0.888 0.00044961 0.19867 0.00010059 506.3139554516203 61.29 0.2253 60.801 60.654 60.88 -0.48932 15 10 2 0 0 0 0.1685 1 33362 33362 26.268 7.0112 1 1961900 36512 1948 24252 24728 43038 43038 0.1075490637402936 LPVATRLELY 10 Unmodified _LPVATRLELY_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8477783203125 2 587.845156 1173.67576 0.61389 0.00036087 2.0084 0.0011806 2.6223 0.0015415 587.8466460629021 64.351 0.23222 63.865 63.739 63.971 -0.48512 18 10 2 0 0 0 0.30444 1 35111 35111 27.223 1.8239 1 1292500 36513 1948 24253 24729 43039 43039 0.09586847091281925 LPVATRLELY 10 Unmodified _LPVATRLELY_ 0 0 0 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.845156 1173.67576 1.1192 0.00065789 3.1171 0.0018324 4.2363 0.0024903 587.8466828461068 63.872 0.19675 63.861 63.741 63.938 -0.010532 -0.0020501 0.0010561 NaN 27.223 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1319300 36514 1948 24253 24729 0.09586847091281925 LPVDFERSF 9 Unmodified _LPVDFERSF_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2882690429688 2 555.284931 1108.55531 0.91604 0.00050866 -0.078863 -4.3791E-05 0.83718 0.00046487 555.2846416761189 62.34 0.75362 61.852 61.489 62.243 -0.48764 133 35 6 0 0 0 0.20428 1 34095 34095 22.736 11.912 1 34210000 36515 3194 24254 24730 43040 43040 0.0053743909768400044 LPVDFERSF 9 Unmodified _LPVDFERSF_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.28564453125 2 555.284931 1108.55531 0.84532 0.00046939 0.34369 0.00019085 1.189 0.00066024 555.2851099764262 68.384 0.64153 62.209 61.992 62.633 -6.1757 59 37 2 0 0 0 0.2324 1 44735 44735 20.415 1.1575 1 21526000 36516 3194 24254 24730 43041 43041 0.0053743909768400044 LPVDFHIKM 9 Unmodified _LPVDFHIKM_ 0 0 0 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2044067382812 3 367.203805 1098.58959 0.24067 8.8373E-05 0.17874 6.5634E-05 0.4194 0.00015401 367.20394703318306 61.201 0.31553 61.158 60.967 61.282 -0.04351 30 15 3 0 0 0 0.15882 1 33410 33410 27.223 20.5 1 6208000 36517 1814 24255 24731 43042 43042 0.044235639849148356 LPVDFHIKM 9 Unmodified _LPVDFHIKM_ 0 0 0 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.203857421875 3 367.203805 1098.58959 1.6143 0.00059277 -0.91075 -0.00033443 0.70353 0.00025834 367.20323747529 81.692 0.75842 75.517 75.227 75.986 -6.1757 131 42 4 0 0 0 0.060956 4 53716 53469;53593;53716;53838 42.312 26.163 1 56168000 36518 1814 24255 24731 43043;43044;43045;43046 43045 0.044235639849148356 LPVDFHIKM 9 Oxidation (M) _LPVDFHIKM(Oxidation (M))_ LPVDFHIKM(1) LPVDFHIKM(41) 0 0 1 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5352783203125 3 372.535444 1114.5845 1.1479 0.00042763 -0.56143 -0.00020915 0.58645 0.00021847 372.5354080331758 53.216 0.44278 47.412 47.216 47.659 -5.8042 60 27 3 0 0 0 0.067618 1 33580 33580 40.725 21.363 1 40742000 36519 1814 24255 24732 43047 43047 303 0.031792601223060046 LPVDFSNIPTY 11 Unmodified _LPVDFSNIPTY_ 0 0 0 nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3253173828125 2 633.324254 1264.63395 0.84114 0.00053271 0.24814 0.00015715 1.0893 0.00068986 633.3244690159615 87.507 0.27586 81.332 81.163 81.439 -6.1757 23 14 2 0 0 0 4.6554E-06 1 57700 57700 96.111 57.935 1 11060000 36520 6559 24256 24733 43048 43048 0.012222466121102116 LPVDFVECL 9 Carbamidomethyl (C) _LPVDFVEC(Carbamidomethyl (C))L_ LPVDFVEC(1)L LPVDFVEC(48)L 0 1 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000161791|Q8IVF7-2|FMNL3 ENSG00000157827|ENST00000288670|FMNL2 MSMS AL20221201_MKP_PDAC_01 4 546.274658203125 2 546.275718 1090.53688 NaN NaN NaN NaN NaN NaN NaN 98.766 1 92.591 92.091 93.091 -6.1757 0 0 0 0.080768 1 65567 65567 48.346 18.121 1 36521 6543;6808 24257 24734 43049 43049 644 -0.004764388685543963 LPVDFVTADKF 11 Unmodified _LPVDFVTADKF_ 0 0 0 nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1 nc|ENSG00000102144|P00558-2|PGK1 nc|ENSG00000102144|P00558-2|PGK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3340454101562 2 626.334621 1250.65469 0.47359 0.00029663 -0.73497 -0.00046033 -0.26137 -0.00016371 626.3340069818354 72.475 0.22392 71.999 71.878 72.102 -0.47609 27 10 3 0 0 0 0.17671 1 39639 39639 39.923 23.774 1 2229600 36522 2021 24258 24735 43050 43050 0.039388369917332966 LPVDFVTADKF 11 Unmodified _LPVDFVTADKF_ 0 0 0 nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1 nc|ENSG00000102144|P00558-2|PGK1 nc|ENSG00000102144|P00558-2|PGK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 626.334621 1250.65469 0.62626 0.00039225 -0.71332 -0.00044677 -0.08706 -5.4529E-05 626.8357600503757 71.905 0.18469 71.944 71.85 72.035 0.039024 -0.027241 2.3143E-05 NaN 39.923 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1081700 36523 2021 24258 24735 0.039388369917332966 LPVDGVHFL 9 Unmodified _LPVDGVHFL_ 0 0 0 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7793884277344 2 498.779285 995.544017 -0.15969 -7.9652E-05 0.20649 0.00010299 0.0468 2.3343E-05 498.779553889339 69.932 0.2463 69.453 69.29 69.536 -0.47903 17 10 2 0 0 0 0.052168 1 38219 38219 44.407 14.182 1 1729700 36524 2394 24259 24736 43051 43051 0.046066617941846744 LPVDIFLVSY 10 Unmodified _LPVDIFLVSY_ 0 0 0 ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.3043212890625 2 583.328808 1164.64306 0.88934 0.00051878 0.91486 0.00053367 1.8042 0.0010524 583.3294672951929 101.38 0.068619 95.201 95.163 95.231 -6.1757 5 3 2 0 0 0 0.22949 1 67994 67994 13.042 1.4022 1 7253300 36525 7730 24260 24737 43052 43052 0.0673263996843616 LPVDINDIF 9 Unmodified _LPVDINDIF_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2823486328125 2 523.281857 1044.54916 0.29535 0.00015455 -0.12378 -6.4774E-05 0.17156 8.9776E-05 523.2816093743058 94.764 0.19874 94.344 94.195 94.393 -0.42043 14 9 2 0 0 0 0.43463 1 51735 51735 10.824 6.4947 1 300280 36526 7181 24261 24738 43053 43053 0.02866920866131295 LPVDIRQYL 9 Unmodified _LPVDIRQYL_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.824951171875 2 558.824224 1115.63389 0.37756 0.00021099 1.4405 0.00080501 1.8181 0.001016 558.8247355145866 76.343 0.40895 75.864 75.594 76.003 -0.47945 46 17 4 0 0 0 0.08691 1 41814 41814 36.127 9.8589 1 2386700 36527 8006 24262 24739 43054 43054 0.08070291402759722 LPVDIRQYL 9 Unmodified _LPVDIRQYL_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8260498046875 2 558.824224 1115.63389 0.53184 0.00029721 0.20726 0.00011582 0.7391 0.00041303 558.8243478915686 75.792 0.47963 75.84 75.629 76.109 0.047943 72 21 4 0 0 0 0.015445 2 41747 41747;41852 68.081 22.381 1 58858000 36528 8006 24262 24739 43055;43056 43055 0.08070291402759722 LPVDIRQYL 9 Unmodified _LPVDIRQYL_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8255004882812 2 558.824224 1115.63389 1.1868 0.00066321 0.66191 0.00036989 1.8487 0.0010331 558.8242067975352 90.47 0.84013 84.295 83.883 84.723 -6.1757 152 49 4 0 0 0 0.0090524 4 59539 59539;59671;59803;59935 85.642 22.381 1 93159000 36529 8006 24262 24739 43057;43058;43059;43060 43057 0.08070291402759722 LPVDKAQEL 9 Unmodified _LPVDKAQEL_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000558780.5_2_14:24649650-24651621:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7868347167969 2 506.787307 1011.56006 0.09804 4.9686E-05 -1.2396 -0.00062821 -1.1416 -0.00057852 506.78688516596196 35.49 0.27293 35.49 35.342 35.615 0 33 13 3 0 0 0 0.039985 1 18755 18755 49.933 0 1 22944000 36530 9827 24263 24740 43061 43061 0.05474323240423473 LPVDKPVGM 9 Oxidation (M) _LPVDKPVGM(Oxidation (M))_ LPVDKPVGM(1) LPVDKPVGM(42) 0 0 1 nc|ENSG00000163697|Q92870-3|APBB2;nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2 nc|ENSG00000163697|Q92870-3|APBB2 nc|ENSG00000163697|Q92870-3|APBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2656860351562 2 486.265153 970.515753 -0.48882 -0.0002377 0.25544 0.00012421 -0.23338 -0.00011349 486.2652834285208 27.417 0.16684 27.417 27.341 27.508 0 15 8 2 0 0 0 0.06294 1 14127 14127 41.84 9.5341 1 3700300 36531 7052 24264 24741 43062 43062 1212 0.029315958226106886 LPVDKPVGM 9 Unmodified _LPVDKPVGM_ 0 0 0 nc|ENSG00000163697|Q92870-3|APBB2;nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2 nc|ENSG00000163697|Q92870-3|APBB2 nc|ENSG00000163697|Q92870-3|APBB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.268310546875 2 478.267696 954.520839 0.41455 0.00019827 -0.37989 -0.00018169 0.034659 1.6576E-05 478.2675685605427 45.288 0.36428 40.333 40.191 40.555 -4.9549 40 24 2 0 0 0 0.06294 2 27704 27704;27840 41.84 9.5341 1 31562000 36532 7052 24264 24742 43063;43064 43063 0.041758996852195196 LPVDLPFSGY 10 Unmodified _LPVDLPFSGY_ 0 0 0 nc|ENSG00000003137|Q9NR63-2|CYP26B1;nc|ENSG00000003137|Q9NR63-3|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1 nc|ENSG00000003137|Q9NR63-2|CYP26B1 nc|ENSG00000003137|Q9NR63-2|CYP26B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2901611328125 2 554.289682 1106.56481 0.65586 0.00036354 0.044648 2.4748E-05 0.70051 0.00038828 554.2894269913616 89.427 0.34444 88.926 88.731 89.076 -0.50172 32 14 3 0 0 0 0.69385 1 48942 48942 6.7232 4.4204 1 813060 36533 267 24265 24743 43065 43065 0.015792073832017195 LPVDMFVSL 9 Unmodified _LPVDMFVSL_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7777709960938 2 510.775354 1019.53615 0.64669 0.00033031 3.0091 0.001537 3.6558 0.0018673 510.77667051505097 36.812 0.20624 36.812 36.71 36.916 0 13 9 2 0 0 0 0.2001 1 19576 19576 23.148 2.7339 1 909720 + 36534 22380 24266 24744 43066 43066 0.0271676648239918 LPVDNVVAL 9 Unmodified _LPVDNVVAL_ 0 0 0 REV__ENSG00000124203|ENST00000371030|ZNF831 REV__ENSG00000124203|ENST00000371030|ZNF831 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2793579101562 2 470.279118 938.543683 0.32507 0.00015288 0.24272 0.00011414 0.56779 0.00026702 470.2790778753338 59.286 0.29623 58.795 58.625 58.921 -0.49079 19 13 2 0 0 0 0.32871 1 32208 32208 15.847 1.0089 1 1135300 + 36535 19428 24267 24745 43067 43067 0.07195242074340058 LPVDSSHGF 9 Unmodified _LPVDSSHGF_ 0 0 0 ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7356262207031 2 479.735074 957.455596 0.21729 0.00010424 1.2889 0.00061831 1.5062 0.00072256 479.73557856892853 37.664 0.27563 37.664 37.51 37.786 0 29 13 3 0 0 0 0.06187 1 20019 20019 42.095 25.152 1 3995800 36536 10165 24268 24746 43068 43068 -0.02483378516274115 LPVDTAPP 8 Unmodified _LPVDTAPP_ 0 0 0 REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.440673828125 1 809.440346 808.433069 0.03313 2.6817E-05 0.14268 0.00011549 0.17581 0.00014231 809.4406402750219 56.754 0.33784 56.754 56.609 56.947 0 25 14 2 0 0 0 0.35156 2 31535 31535;31657 49.669 9.2203 1 4533700 + 36537 27730 24269 24747 43069;43070 43069 0.021190220860830777 LPVDTAPP 8 Unmodified _LPVDTAPP_ 0 0 0 REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF REV__ENST00000482963.1_1_10:126305748-126305844:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 809.440346 808.433069 0.03313 2.6817E-05 0.14268 0.00011549 0.17581 0.00014231 809.4406402750219 56.754 0.33784 56.754 56.609 56.947 0 0 0 NaN 49.669 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4533700 + 36538 27730 24269 24747 0.021190220860830777 LPVDTRRKY 9 Unmodified _LPVDTRRKY_ 0 0 0 nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2240905761719 3 383.224257 1146.65094 1.5983 0.00061252 -0.47655 -0.00018263 1.1218 0.00042989 383.22409772466887 20.895 0.2736 18.202 18.065 18.339 -2.693 34 15 3 0 0 0 0.094149 1 11120 11120 26.021 13.846 1 5948400 36539 6036 24270 24748 43071 43071 0.0834821200855913 LPVDVVVNA 9 Unmodified _LPVDVVVNA_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2712097167969 2 463.271293 924.528032 0.72659 0.00033661 0.40969 0.0001898 1.1363 0.00052641 463.271542754996 61.317 0.2662 61.317 61.123 61.389 0 20 11 2 0 0 0 0.32871 1 34155 34155 15.847 5.0233 1 844580 36540 8296;16388 24271 24749 43072 43072 0.06274955557285011 LPVDVVVNA 9 Unmodified _LPVDVVVNA_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2719421386719 2 463.271293 924.528032 0.17272 8.0018E-05 0.53768 0.00024909 0.71041 0.00032911 463.2714040078641 61.829 0.12362 61.342 61.263 61.387 -0.48764 7 5 2 0 0 0 0.43463 1 33692 33692 10.824 0 1 659500 36541 8296;16388 24271 24749 43073 43073 0.06274955557285011 LPVEDDIDL 9 Unmodified _LPVEDDIDL_ 0 0 0 nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6 nc|ENSG00000143870|Q15084-3|PDIA6 nc|ENSG00000143870|Q15084-3|PDIA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7609252929688 2 514.760955 1027.50736 NaN NaN NaN NaN NaN NaN NaN 66.813 1 66.813 66.313 67.313 0 0 0 0 0.15618 1 37264 37264 36.044 10.645 1 36542 5563 24272 24750 43074 43074 -0.005296796130551229 LPVEELRVY 9 Unmodified _LPVEELRVY_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3162841796875 2 559.316232 1116.61791 0.65262 0.00036502 -0.39368 -0.00022019 0.25894 0.00014483 559.3160541078902 57.748 0.34384 57.748 57.573 57.917 0 39 16 3 0 0 0 0.040733 1 32101 32101 53.833 11.993 1 11520000 36543 7191 24273 24751 43075 43075 0.06426585165877441 LPVEELRVY 9 Unmodified _LPVEELRVY_ 0 0 0 nc|ENSG00000164403|Q2M3G4-2|SHROOM1;ENSG00000164403|ENST00000378679|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 nc|ENSG00000164403|Q2M3G4-2|SHROOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.317138671875 2 559.316232 1116.61791 0.45846 0.00025642 0.46352 0.00025926 0.92198 0.00051568 559.3165336376188 58.264 0.38548 57.773 57.597 57.982 -0.49079 47 18 4 0 0 0 0.12357 2 31634 31634;31739 39.95 17.213 1 17505000 36544 7191 24273 24751 43076;43077 43076 0.06426585165877441 LPVEEQLKL 9 Unmodified _LPVEEQLKL_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.88037109375 3 356.881497 1067.62266 -0.57827 -0.00020637 -1.863 -0.00066486 -2.4412 -0.00087123 356.88073760009235 18.975 0.14109 18.998 18.926 19.067 0.023106 19 8 3 0 0 0 0.49214 1 9550 9550 7.9454 0 1 2044300 36545 6493 24274 24752 43078 43078 0.09155469308620923 LPVEEQLKL 9 Unmodified _LPVEEQLKL_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MSMS AL20221201_MKP_PDAC_01 4 534.818115234375 2 534.818607 1067.62266 NaN NaN NaN NaN NaN NaN NaN 20.358 1 17.665 17.165 18.165 -2.693 0 0 0 0.69506 1 10845 10845 9.3831 0 1 36546 6493 24274 24752 43079 43079 0.09155469308620923 LPVEGGKGGEF 11 Unmodified _LPVEGGKGGEF_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2855224609375 2 545.282389 1088.55022 0.6323 0.00034478 0.716 0.00039042 1.3483 0.00073521 545.2829863587733 36.373 0.27771 36.373 36.229 36.507 0 40 13 4 0 0 0 0.14665 1 19273 19273 37.075 13.285 1 15217000 36547 2865 24275 24753 43080 43080 0.009491352350551097 LPVEGGKGGEF 11 Unmodified _LPVEGGKGGEF_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2821044921875 2 545.282389 1088.55022 0.87227 0.00047563 0.91188 0.00049723 1.7841 0.00097286 545.2816631816319 41.571 0.38521 36.964 36.788 37.173 -4.6079 60 25 3 0 0 0 0.038129 1 24988 24988 53.47 17.003 1 26594000 36548 2865 24275 24753 43081 43081 0.009491352350551097 LPVEHVNQL 9 Unmodified _LPVEHVNQL_ 0 0 0 ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 ENST00000476275.5_1_1:78046613-78098535:-|nuORF ENST00000476275.5_1_1:78046613-78098535:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7926635742188 2 524.792924 1047.57129 -0.082973 -4.3544E-05 -0.77512 -0.00040678 -0.85809 -0.00045032 524.7924624383861 41.015 0.21761 41.015 40.919 41.137 0 25 13 2 0 0 0 0.0085857 1 22071 22071 110.67 58.406 1 13590000 36549 623 24276 24754 43082 43082 0.049411453345555856 LPVEHVNQL 9 Unmodified _LPVEHVNQL_ 0 0 0 ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 ENST00000476275.5_1_1:78046613-78098535:-|nuORF ENST00000476275.5_1_1:78046613-78098535:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.7940673828125 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 46.493 1 41.412 40.912 41.912 -5.0805 0 0 0 0.013541 1 28729 28729 85.642 43.802 1 36550 623 24276 24754 43083 43083 0.049411453345555856 LPVEHVNQL 9 Unmodified _LPVEHVNQL_ 0 0 0 ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3 ENST00000476275.5_1_1:78046613-78098535:-|nuORF ENST00000476275.5_1_1:78046613-78098535:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.76806640625 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 46.62 1 41.54 41.04 42.04 -5.0805 0 0 0 0.13463 1 28840 28840 49.933 13.806 1 36551 623 24276 24754 43084 43084 0.049411453345555856 LPVEKLPKY 9 Unmodified _LPVEKLPKY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8902282714844 3 362.890104 1085.64848 0.044679 1.6213E-05 0.32395 0.00011756 0.36863 0.00013377 362.8901897304725 39.811 0.44904 39.514 39.264 39.713 -0.29716 65 21 4 0 0 0 0.036857 2 21069 20967;21069 40.725 24.159 1 14444000 36552 5575 24277 24755 43085;43086 43086 0.10908363550879585 LPVEKLPKY 9 Unmodified _LPVEKLPKY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8319091796875 2 543.831517 1085.64848 0.43538 0.00023677 0.0097564 5.3059E-06 0.44513 0.00024208 543.8315313336333 44.22 0.45355 39.368 39.16 39.614 -4.852 54 32 2 0 0 0 0.010301 2 26913 26913;27047 79.596 46.811 1 16203000 36553 5575 24277 24755 43087;43088 43087 0.10908363550879585 LPVEKLPKY 9 Unmodified _LPVEKLPKY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8904113769531 3 362.890104 1085.64848 1.2146 0.00044078 0.28403 0.00010307 1.4987 0.00054385 362.89014033236856 44.277 0.60419 39.425 39.084 39.688 -4.852 113 42 3 0 0 0 0.025842 2 26978 26978;27123 53.317 32.736 1 87151000 36554 5575 24277 24755 43089;43090 43089 0.10908363550879585 LPVEKLPKY 9 Unmodified _LPVEKLPKY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 362.890104 1085.64848 0.14106 5.1188E-05 -0.6382 -0.00023159 -0.49714 -0.00018041 363.22411455155355 39.489 0.29473 39.489 39.321 39.616 0 0.013142 -0.00074851 NaN 53.317 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2509100 36555 5575 24277 24755 0.10908363550879585 LPVEKQCEL 9 Carbamidomethyl (C) _LPVEKQC(Carbamidomethyl (C))EL_ LPVEKQC(1)EL LPVEKQC(89)EL 0 1 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2918701171875 2 558.291899 1114.56925 1.12 0.00062529 -0.85407 -0.00047682 0.26593 0.00014847 558.2914538973123 38.118 0.35149 33.749 33.548 33.9 -4.3689 34 20 2 0 0 0 0.0086209 2 22489 22365;22489 89.401 30.722 1 24389000 36556 4858 24278 24756 43091;43092 43092 498 0.01654348534430028 LPVEPRVEF 9 Unmodified _LPVEPRVEF_ 0 0 0 REV__ENST00000288014.6_1_14:24025414-24025621:+|nuORF REV__ENST00000288014.6_1_14:24025414-24025621:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3049926757812 2 543.303124 1084.5917 0.42575 0.00023131 1.7586 0.00095543 2.1843 0.0011867 543.3041401555394 100.59 0.084724 94.415 94.374 94.459 -6.1757 13 5 3 0 0 0 0.19127 1 67305 67305 24.021 6.9077 1 63792000 + 36557 25231 24279 24757 43093 43093 0.05278315994382865 LPVEQGFTF 9 Unmodified _LPVEQGFTF_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2679443359375 2 519.26875 1036.52295 0.83007 0.00043103 -1.4767 -0.0007668 -0.64662 -0.00033577 519.267909527888 82.889 0.42015 76.713 76.521 76.941 -6.1757 52 23 3 0 0 0 0.08691 1 54475 54475 36.127 15.673 1 34555000 36558 6855 24280 24758 43094 43094 0.006146516946500924 LPVEQGNFPY 10 Unmodified _LPVEQGNFPY_ 0 0 0 ENST00000465956.1_1_6:33384429-33385110:-|nuORF;nc|ENSG00000112514|O60888-3|CUTA;ENSG00000112514|ENST00000488034|CUTA;nc|ENSG00000112514|O60888-2|CUTA ENST00000465956.1_1_6:33384429-33385110:-|nuORF ENST00000465956.1_1_6:33384429-33385110:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.291015625 2 582.290214 1162.56587 0.75037 0.00043693 -0.35723 -0.00020801 0.39314 0.00022892 582.290506509375 68.392 0.31602 62.217 62.067 62.383 -6.1757 26 19 2 0 0 0 0.041224 1 44632 44632 62.573 34.944 1 24542000 36559 2896 24281 24759 43095 43095 -0.00890578247913254 LPVERLYDI 9 Unmodified _LPVERLYDI_ 0 0 0 ENSG00000180902|ENST00000321264|D2HGDH;D2HGDH|p.V415M|1|0.16|ENSG00000180902|chr2:241755951-241755951|G/A|missense_variant ENSG00000180902|ENST00000321264|D2HGDH ENSG00000180902|ENST00000321264|D2HGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3167724609375 2 559.316232 1116.61791 0.65262 0.00036502 -0.39368 -0.00022019 0.25894 0.00014483 559.3160541078902 57.748 0.34384 57.748 57.573 57.917 0 39 16 3 0 0 0 0.40615 1 32208 32208 17.113 0.96379 1 11520000 36560 8931 24282 24760 43096 43096 0.06426585165831966 LPVETLLVQY 10 Unmodified _LPVETLLVQY_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.839599609375 2 587.839539 1173.66453 0.43283 0.00025443 1.0785 0.00063399 1.5113 0.00088842 588.3415725049464 86.178 0.20088 85.675 85.544 85.745 -0.50318 11 7 2 0 0 0 0.52888 1 47162 47162 14.838 9.1064 1 313220 36561 4858 24283 24761 43097 43097 0.08464024997147135 LPVFDIVIHRF 11 Unmodified _LPVFDIVIHRF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.60009765625 3 452.599324 1354.77614 0.93773 0.00042442 0.14137 6.3984E-05 1.0791 0.0004884 452.59934106317723 99.159 0.15856 92.984 92.923 93.081 -6.1757 14 8 3 0 0 0 2.8439E-06 1 65972 65972 82.445 67.488 1 52106000 36562 2877 24284 24762 43098 43098 0.11294504144916573 LPVFDIVIHRF 11 Unmodified _LPVFDIVIHRF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MSMS AL20221201_MKP_PDAC_01 4 678.3949584960938 2 678.395348 1354.77614 NaN NaN NaN NaN NaN NaN NaN 99.211 1 93.035 92.535 93.535 -6.1757 0 0 0 0.14145 1 65998 65998 43.982 25.836 1 36563 2877 24284 24762 43099 43099 0.11294504144916573 LPVFLDSHFVY 11 Unmodified _LPVFLDSHFVY_ 0 0 0 ENSG00000196199|ENST00000361479|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.35302734375 2 668.850438 1335.68632 0.90384 0.00060454 0.39276 0.0002627 1.2966 0.00086723 668.8501690405527 98.425 0.10191 92.249 92.206 92.308 -6.1757 12 6 3 0 0 0 4.5274E-09 1 65299 65299 114.65 85.567 1 22593000 36564 9777 24285 24763 43100 43100 0.03190829745699375 LPVFNLTQ 8 Unmodified _LPVFNLTQ_ 0 0 0 nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 nc|ENSG00000007402|Q9NY47-4|CACNA2D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2652893066406 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 5.1874 1 5.1885 4.6885 5.6885 0.0010915 0 0 0 0.97444 1 2615 2615 0.79363 0 1 36565 365 24286 24764 43101 43101 0.04942972902836118 LPVFRCEDL 9 Unmodified _LPVFRCEDL_ 0 0 0 ENSG00000120616|ENST00000319778|EPC1;nc|ENSG00000120616|Q9H2F5|EPC1;ENST00000469059.1_1_10:32634533-32635843:-|nuORF;ENST00000480402.1_1_10:32634460-32635843:-|nuORF ENSG00000120616|ENST00000319778|EPC1 ENSG00000120616|ENST00000319778|EPC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2354125976562 2 546.281334 1090.54812 0.34853 0.00019039 -3.8023 -0.0020771 -3.4538 -0.0018868 546.2790027073695 84.403 0.26697 83.904 83.753 84.02 -0.49961 24 11 3 0 0 0 0.20528 1 46225 46225 8.5933 0 1 1019800 36566 3524 24287 24765 43102 43102 0.006463832255803936 LPVFTRDDF 9 Unmodified _LPVFTRDDF_ 0 0 0 ENSG00000170209|ENST00000303941|ANKK1 ENSG00000170209|ENST00000303941|ANKK1 ENSG00000170209|ENST00000303941|ANKK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2576293945312 2 555.284931 1108.55531 0.91604 0.00050866 -0.078863 -4.3791E-05 0.83718 0.00046487 555.2846416761189 62.34 0.75362 61.852 61.489 62.243 -0.48764 133 35 6 0 0 0 0.51218 1 33782 33782 6.7232 0 1 34210000 36567 7958 24288 24766 43103 43103 0.005374390976612631 LPVFYRSGIT 10 Unmodified _LPVFYRSGIT_ 0 0 0 nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3213500976562 2 576.824224 1151.63389 0.61325 0.00035374 -1.822 -0.001051 -1.2087 -0.00069723 576.823928671997 72.034 0.46234 72.073 71.768 72.23 0.039024 60 22 4 0 0 0 0.62068 1 39549 39549 10.074 1.4806 1 30334000 36568 5976 24289 24767 43104 43104 0.06414291402734307 LPVGDHLTY 9 Unmodified _LPVGDHLTY_ 0 0 0 nc|ENSG00000148541|Q8NE31-3|FAM13C;nc|ENSG00000148541|Q8NE31-5|FAM13C;nc|ENSG00000148541|Q8NE31-4|FAM13C;ENSG00000148541|ENST00000618804|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C nc|ENSG00000148541|Q8NE31-3|FAM13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7659301757812 2 507.766374 1013.5182 1.1419 0.00057983 -0.72722 -0.00036926 0.41471 0.00021058 507.76602620224315 42.753 0.34165 42.753 42.605 42.947 0 31 17 2 0 0 0 0.2001 1 23125 23125 23.148 1.4018 1 13081000 36569 5943 24290 24768 43105 43105 0.011977675518892283 LPVGSCLGPI 10 Unmodified _LPVGSCLGPI_ 0 0 0 ENST00000358758.11_1_16:29825955-29826759:+|nuORF ENST00000358758.11_1_16:29825955-29826759:+|nuORF ENST00000358758.11_1_16:29825955-29826759:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.2520141601562 2 478.267696 954.520839 NaN NaN NaN NaN NaN NaN NaN 45.124 1 40.272 39.772 40.772 -4.852 0 0 0 0.7417 1 27644 27644 14.838 2.3067 1 36570 12134 24291 24769 43106 43106 0.04175899685196782 LPVGTTATL 9 Unmodified _LPVGTTATL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.5066528320312 1 872.50876 871.501483 -0.21562 -0.00018813 0.15441 0.00013473 -0.061203 -5.34E-05 872.5087302845203 52.07 0.31469 52.07 51.908 52.223 0 24 13 2 0 0 0 0.0088975 2 28761 28761;28874 104.8 40.563 1 6265300 36571 1707 24292 24770 43107;43108 43107 0.060592666659431416 LPVGTTATL 9 Unmodified _LPVGTTATL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 872.5094604492188 1 872.50876 871.501483 -0.11528 -0.00010058 0.81984 0.00071532 0.70456 0.00061474 872.5093517114958 52.544 0.29506 52.11 51.964 52.259 -0.43367 30 14 3 0 0 0 0.0090851 2 28358 28358;28472 85.357 27.885 1 4443000 36572 1707 24292 24770 43109;43110 43109 0.060592666659431416 LPVGTTATL 9 Unmodified _LPVGTTATL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7582702636719 2 436.758018 871.501483 1.0887 0.00047549 -0.26518 -0.00011582 0.8235 0.00035967 436.7579331009276 60.242 0.43626 54.128 53.943 54.379 -6.1147 33 22 2 0 0 0 0.0081063 2 38697 38697;38828 93.883 23.168 1 25544000 36573 1707 24292 24770 43111;43112 43111 0.060592666659431416 LPVGTTATL 9 Unmodified _LPVGTTATL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 872.510498046875 1 872.50876 871.501483 0.9186 0.00080148 -0.47035 -0.00041038 0.44825 0.0003911 872.5082664213728 60.291 0.41425 54.176 53.943 54.357 -6.1147 35 21 2 0 0 0 0.0083087 2 38824 38699;38824 97.075 19.09 1 28305000 36574 1707 24292 24770 43113;43114 43114 0.060592666659431416 LPVGTTATLYF 11 Unmodified _LPVGTTATLYF_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8255615234375 2 591.823889 1181.63323 0.97845 0.00057907 0.19371 0.00011464 1.1722 0.00069371 591.8239421032774 91.761 0.33819 85.585 85.401 85.74 -6.1757 28 18 2 0 0 0 0.054439 1 60631 60631 49.933 8.0934 1 9270400 36575 1707 24293 24771 43115 43115 0.04967451963034364 LPVHPKLRK 9 Unmodified _LPVHPKLRK_ 0 0 0 REV__nc|ENSG00000164347|Q969S9-5|GFM2 REV__nc|ENSG00000164347|Q969S9-5|GFM2 MSMS AL20221201_MKP_PDAC_01 4 544.35986328125 2 544.358568 1086.70258 NaN NaN NaN NaN NaN NaN NaN 105.81 1 99.634 99.134 100.13 -6.1757 0 0 0 0.85737 1 70869 70869 0.6015 0 1 + 36576 21911 24294 24772 43116 43116 0.16270000493113912 LPVHSLTTM 9 Oxidation (M) _LPVHSLTTM(Oxidation (M))_ LPVHSLTTM(1) LPVHSLTTM(71) 0 0 1 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7686462402344 2 507.76806 1013.52157 -0.5787 -0.00029385 0.63177 0.00032079 0.053067 2.6946E-05 507.76833752372886 34.18 0.20969 33.989 33.865 34.074 -0.19131 17 7 3 0 0 0 0.013472 1 17836 17836 70.716 36.613 1 2425900 36577 917 24295 24773 43117 43117 141 0.01534694334247888 LPVHSLTTM 9 Oxidation (M) _LPVHSLTTM(Oxidation (M))_ LPVHSLTTM(1) LPVHSLTTM(60) 0 0 1 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MSMS AL20221201_MKP_PDAC_01 4 507.7710266113281 2 507.76806 1013.52157 NaN NaN NaN NaN NaN NaN NaN 39.129 1 34.678 34.178 35.178 -4.4509 0 0 0 0.043758 1 23181 23181 60.39 34.99 1 36578 917 24295 24773 43118 43118 141 0.01534694334247888 LPVHSLTTM 9 Unmodified _LPVHSLTTM_ 0 0 0 nc|ENSG00000065882|Q86TI0-2|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENSG00000065882|ENST00000698857|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 nc|ENSG00000065882|Q86TI0-2|TBC1D1 MSMS AL20221201_MKP_PDAC_01 4 499.771484375 2 499.770603 997.526652 NaN NaN NaN NaN NaN NaN NaN 51.774 1 46.04 45.54 46.54 -5.7345 0 0 0 0.043758 1 32606 32606 60.39 37.241 1 36579 917 24295 24774 43119 43119 0.02778998196856719 LPVHVFEAL 9 Unmodified _LPVHVFEAL_ 0 0 0 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7947998046875 2 512.794935 1023.57532 0.080138 4.1095E-05 -0.56058 -0.00028746 -0.48044 -0.00024637 512.7945099998406 70.415 0.30207 69.936 69.738 70.04 -0.47903 46 20 3 0 0 0 0.027803 2 38454 38454;38554 56.541 26.316 1 12016000 36580 1897 24296 24775 43120;43121 43120 0.06447234828260662 LPVHVFEAL 9 Unmodified _LPVHVFEAL_ 0 0 0 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 ENSG00000100982|ENST00000372409|PCIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7949829101562 2 512.794935 1023.57532 0.51674 0.00026498 0.8212 0.00042111 1.3379 0.00068609 512.7954548789493 69.822 0.3138 69.853 69.683 69.997 0.030914 28 15 2 0 0 0 0.045537 1 38370 38370 46.921 23.772 1 8314600 36581 1897 24296 24775 43122 43122 0.06447234828260662 LPVIIFTTF 9 Unmodified _LPVIIFTTF_ 0 0 0 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;ENSG00000171130|ENST00000425642|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8153076171875 2 525.815336 1049.61612 -0.6419 -0.00033752 0.83581 0.00043948 0.19391 0.00010196 525.8158275375399 101.3 0.11327 101.26 101.19 101.3 -0.04216 10 3 4 0 0 0 0.058206 1 56280 56280 42.968 22.097 1 15401000 36582 16380 24297 24776 43123 43123 0.09329576147888474 LPVIIFTTF 9 Unmodified _LPVIIFTTF_ 0 0 0 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-3|ATP6V0E2;ENSG00000171130|ENST00000425642|ATP6V0E2;nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 nc|ENSG00000171130|Q8NHE4-2|ATP6V0E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8154296875 2 525.815336 1049.61612 0.69278 0.00036428 -0.27356 -0.00014384 0.41923 0.00022043 525.8150471729588 101.79 0.10023 95.612 95.562 95.662 -6.1757 28 8 4 0 0 0 0.058206 1 68326 68326 42.968 19.82 1 238940000 36583 16380 24297 24776 43124 43124 0.09329576147888474 LPVILLPFYY 10 Unmodified _LPVILLPFYY_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MSMS AL20221201_MKP_PDAC_01 4 619.367431640625 2 619.365193 1236.71583 NaN NaN NaN NaN NaN NaN NaN 102.46 1 96.287 95.787 96.787 -6.1757 0 0 0 0.53246 1 68759 68759 24.674 21.393 1 36584 458 24298 24777 43125 43125 0.10694393761855281 LPVKGFRSY 9 Unmodified _LPVKGFRSY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2060852050781 3 356.206315 1065.59712 0.027333 9.736E-06 0.3021 0.00010761 0.32944 0.00011735 356.20641167451413 33.893 0.43033 33.922 33.672 34.103 0.028934 60 18 5 0 0 0 0.19361 1 17810 17810 17.863 9.1178 1 81989000 36585 4347 24299 24778 43126 43126 0.06694039576859723 LPVKGFRSY 9 Unmodified _LPVKGFRSY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.805908203125 2 533.805834 1065.59712 0.13587 7.253E-05 1.0528 0.00056197 1.1886 0.0006345 533.8055752239934 33.893 0.26767 33.922 33.769 34.036 0.028934 25 11 3 0 0 0 0.10247 1 17835 17835 32.786 7.3864 1 8950200 36586 4347 24299 24778 43127 43127 0.06694039576859723 LPVKSIVL 8 Unmodified _LPVKSIVL_ 0 0 0 nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.5512390136719 2 434.796946 867.57934 0.98558 0.00042853 -0.85135 -0.00037016 0.13423 5.8362E-05 434.79667396113 57.909 0.256 57.843 57.694 57.95 -0.066036 18 12 2 0 0 0 8.7369 1 31505 31505 22.736 3.4793 1 1620900 36587 3851 24300 24779 43128 43128 0.14025324321983135 LPVKSIVL 8 Unmodified _LPVKSIVL_ 0 0 0 nc|ENSG00000125447|Q9NZ52-3|GGA3;nc|ENSG00000125447|Q9NZ52-4|GGA3;nc|ENSG00000125447|Q9NZ52-2|GGA3;ENSG00000125447|ENST00000537686|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 nc|ENSG00000125447|Q9NZ52-3|GGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7978820800781 2 434.796946 867.57934 1.1766 0.00051156 0.87852 0.00038198 2.0551 0.00089354 434.7974018716489 63.666 0.30306 57.491 57.292 57.595 -6.1757 22 16 2 0 0 0 0.29252 1 41170 41170 56.177 12.319 1 7894400 36588 3851 24300 24779 43129 43129 0.14025324321983135 LPVLAAGITM 10 Oxidation (M) _LPVLAAGITM(Oxidation (M))_ LPVLAAGITM(1) LPVLAAGITM(47) 0 0 1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2892456054688 2 501.288628 1000.5627 1.0183 0.00051048 1.2022 0.00060266 2.2206 0.0011131 501.28991968836186 66.314 0.44687 66.323 66.033 66.48 0.0095673 37 22 2 0 0 0 0.09879 1 36378 36378 46.921 14.804 1 4517800 36589 10157 24301 24780 43130 43130 1654 0.06244455373735036 LPVLALPALL 10 Unmodified _LPVLALPALL_ 0 0 0 ENSG00000125861|ENST00000290417|GFRA4;nc|ENSG00000125861|Q9GZZ7|GFRA4 ENSG00000125861|ENST00000290417|GFRA4 ENSG00000125861|ENST00000290417|GFRA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.346923828125 2 510.346803 1018.67905 0.52626 0.00026857 0.058449 2.9829E-05 0.58471 0.0002984 510.3469218901189 99.928 0.12829 93.753 93.691 93.819 -6.1757 15 9 2 0 0 0 0.046949 1 66706 66706 59.795 0 1 29270000 36590 3900 24302 24781 43131 43131 0.17046141935929882 LPVLDKTKF 9 Unmodified _LPVLDKTKF_ 0 0 0 ENSG00000101460|ENST00000360668|MAP1LC3A;nc|ENSG00000101460|Q9H492-2|MAP1LC3A;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B ENSG00000101460|ENST00000360668|MAP1LC3A ENSG00000101460|ENST00000360668|MAP1LC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2185363769531 3 354.21822 1059.63283 0.7468 0.00026453 0.12737 4.5118E-05 0.87417 0.00030965 354.21813103617245 47.327 0.39478 47.288 47.082 47.477 -0.038647 40 18 3 0 0 0 0.29507 1 25435 25435 17.049 9.5715 1 5019300 36591 1971 24303 24782 43132 43132 0.10540077033851958 LPVLDKTKF 9 Unmodified _LPVLDKTKF_ 0 0 0 ENSG00000101460|ENST00000360668|MAP1LC3A;nc|ENSG00000101460|Q9H492-2|MAP1LC3A;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B ENSG00000101460|ENST00000360668|MAP1LC3A ENSG00000101460|ENST00000360668|MAP1LC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.82470703125 2 530.823692 1059.63283 0.86472 0.00045902 0.045872 2.435E-05 0.9106 0.00048337 530.8237059766137 47.253 0.28532 47.217 47.103 47.388 -0.035419 18 13 2 0 0 0 0.15471 1 25466 25466 27.629 15.097 1 1666000 36592 1971 24303 24782 43133 43133 0.10540077033851958 LPVLDKTKF 9 Unmodified _LPVLDKTKF_ 0 0 0 ENSG00000101460|ENST00000360668|MAP1LC3A;nc|ENSG00000101460|Q9H492-2|MAP1LC3A;ENSG00000258102|ENST00000556529|MAP1LC3B2;ENSG00000140941|ENST00000268607|MAP1LC3B ENSG00000101460|ENST00000360668|MAP1LC3A ENSG00000101460|ENST00000360668|MAP1LC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2187805175781 3 354.21822 1059.63283 1.5855 0.00056161 -0.08494 -3.0087E-05 1.5006 0.00053153 354.2181371761987 52.966 0.28256 47.162 47.067 47.35 -5.8042 23 15 2 0 0 0 0.0082353 1 33444 33444 87.258 44.946 1 19221000 36593 1971 24303 24782 43134 43134 0.10540077033851958 LPVLERLIY 9 Unmodified _LPVLERLIY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3453369140625 2 558.344792 1114.67503 0.99734 0.00055686 -0.36743 -0.00020515 0.62991 0.00035171 558.3447547190156 79.402 0.41499 78.912 78.66 79.075 -0.48932 27 17 2 0 0 0 0.091924 1 43506 43506 34.932 10.911 1 699680 36594 3769 24304 24783 43135 43135 0.12228052442242188 LPVLERLIY 9 Unmodified _LPVLERLIY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3450317382812 2 558.344792 1114.67503 0.72484 0.00040471 -0.11432 -6.3829E-05 0.61052 0.00034088 558.3446859697082 78.791 0.71347 78.846 78.444 79.158 0.05497 91 28 4 0 0 0 0.047714 3 43580 43371;43475;43580 45.74 15.103 1 54224000 36595 3769 24304 24783 43136;43137;43138 43138 0.12228052442242188 LPVLERLIY 9 Unmodified _LPVLERLIY_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3455810546875 2 558.344792 1114.67503 1.3489 0.00075315 0.43695 0.00024397 1.7859 0.00099712 558.3449078310389 96.924 0.55247 90.748 90.422 90.974 -6.1757 104 32 4 0 0 0 0.0086209 2 64084 64084;64201 89.401 33.224 1 327220000 36596 3769 24304 24783 43139;43140 43139 0.12228052442242188 LPVLLSVSPF 10 Unmodified _LPVLLSVSPF_ 0 0 0 ENST00000417930.1_1_2:7870673-7870826:+|nuORF ENST00000417930.1_1_2:7870673-7870826:+|nuORF ENST00000417930.1_1_2:7870673-7870826:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.79052734375 2 536.326068 1070.63758 1.0532 0.00056484 0.31025 0.00016639 1.3634 0.00073123 536.8276238786052 100.38 0.12003 94.209 94.171 94.291 -6.1757 12 7 2 0 0 0 0.21734 1 67129 67129 16.942 0 1 12078000 36597 13060 24305 24784 43141 43141 0.10508961176606135 LPVLLWNLT 9 Unmodified _LPVLLWNLT_ 0 0 0 REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.79296875 2 534.826235 1067.63792 2.7133 0.0014511 -0.73202 -0.0003915 1.9812 0.0010596 534.8256986632115 99.876 0.10811 99.84 99.747 99.855 -0.036301 5 3 2 0 0 0 0.48152 1 55457 55457 8.5933 0 1 637860 + 36598 20290 24306 24785 43142 43142 0.10680380896451425 LPVLLWNLT 9 Unmodified _LPVLLWNLT_ 0 0 0 REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.8260498046875 2 534.826235 1067.63792 NaN NaN NaN NaN NaN NaN NaN 101.13 1 94.959 94.459 95.459 -6.1757 0 0 0 0.086291 1 67795 67795 46.921 0 1 + 36599 20290 24306 24785 43143 43143 0.10680380896451425 LPVLLWNLT 9 Unmodified _LPVLLWNLT_ 0 0 0 REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF REV__ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.826235 1067.63792 2.7133 0.0014511 -0.73202 -0.0003915 1.9812 0.0010596 534.8256986632115 99.876 0.10811 99.84 99.747 99.855 -0.036301 0 0 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 637860 + 36600 20290 24306 24785 0.10680380896451425 LPVLMCLL 8 Unmodified _LPVLMCLL_ 0 0 0 REV__ENST00000477205.2_1_10:75576469-75577313:-|nuORF REV__ENST00000477205.2_1_10:75576469-75577313:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2661743164062 2 451.26611 900.517667 1.2232 0.000552 -1.2894 -0.00058185 -0.066169 -2.986E-05 451.26572393327217 49.551 0.35287 49.503 49.331 49.683 -0.048824 52 17 4 0 0 0 0.70131 1 26787 26787 17.087 0 1 32386000 + 36601 27608 24307 24786 43144 43144 0.0634293330683704 LPVLPAEKR 9 Unmodified _LPVLPAEKR_ 0 0 0 REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF REV__ENST00000335420.9_1_7:129710384-129710474:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8213195800781 2 511.821484 1021.62842 0.59809 0.00030611 -0.54282 -0.00027783 0.055268 2.8287E-05 511.82116751271394 60.148 0.80121 60.095 59.499 60.3 -0.053059 99 41 4 0 0 0 0.08691 1 32817 32817 36.127 0 1 180800000 + 36602 25636 24308 24787 43145 43145 0.11846612610941065 LPVLPGDYSIL 11 Unmodified _LPVLPGDYSIL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8406372070312 2 593.839539 1185.66453 1.0725 0.00063691 1.2951 0.00076909 2.3676 0.001406 593.8406490981243 100.12 0.098061 93.941 93.898 93.996 -6.1757 8 5 2 0 0 0 0.33612 1 66914 66914 32.305 18.399 1 11153000 36603 9884 24309 24788 43146 43146 0.07912024997131084 LPVLSTDKF 9 Unmodified _LPVLSTDKF_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2930603027344 2 510.292225 1018.5699 0.28344 0.00014464 0.36716 0.00018736 0.6506 0.000332 510.2922917674711 57.332 0.34208 56.842 56.622 56.964 -0.48974 39 15 3 0 0 0 0.012668 2 31107 31107;31210 72.968 25.219 1 6643600 36604 7717 24310 24789 43147;43148 43147 0.061355112458159056 LPVLSTDKF 9 Unmodified _LPVLSTDKF_ 0 0 0 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 ENSG00000168090|ENST00000303904|COPS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2924499511719 2 510.292225 1018.5699 0.6791 0.00034654 0.15932 8.13E-05 0.83842 0.00042784 510.29236708297765 63.108 0.85321 56.932 56.653 57.506 -6.1757 98 46 3 0 0 0 0.011671 3 40928 40801;40928;41082 75.761 19.584 1 38996000 36605 7717 24310 24789 43149;43150;43151 43150 0.061355112458159056 LPVNEKTY 8 Unmodified _LPVNEKTY_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2611389160156 2 482.260925 962.507297 0.3936 0.00018982 1.006 0.00048515 1.3996 0.00067496 482.2614221188475 46.72 0.21369 46.72 46.585 46.799 0 17 9 2 0 0 0 0.67481 1 25561 25561 19.439 0 1 1705900 36606 10672 24311 24790 43152 43152 0.024543651776298248 LPVNESFGF 9 Unmodified _LPVNESFGF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2522888183594 2 505.2531 1008.49165 0.27713 0.00014002 -0.55519 -0.00028051 -0.27806 -0.00014049 505.2526948538257 73.762 0.35106 73.286 73.118 73.469 -0.47588 34 16 3 0 0 0 0.16226 1 40334 40334 26.884 16.7 1 4861300 36607 7651 24312 24791 43153 43153 -0.012259213394145263 LPVNESFGF 9 Unmodified _LPVNESFGF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2542724609375 2 505.2531 1008.49165 1.0875 0.00054945 0.68274 0.00034496 1.7702 0.00089441 505.25329520198954 81.26 0.41577 75.084 74.927 75.343 -6.1757 43 23 2 0 0 0 0.23158 1 53457 53457 20.454 1.1966 1 27139000 36608 7651 24312 24791 43154 43154 -0.012259213394145263 LPVNFQAML 9 Oxidation (M) _LPVNFQAM(Oxidation (M))L_ LPVNFQAM(1)L LPVNFQAM(44)L 0 0 1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.778076171875 2 524.778428 1047.5423 NaN NaN NaN NaN NaN NaN NaN 72.282 1 72.324 71.824 72.824 0.041725 0 0 0 0.096036 1 39803 39803 44.407 15.92 1 36609 6369 24313 24792 43155 43155 1118 0.02043284713909088 LPVNSHGSF 9 Unmodified _LPVNSHGSF_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2436828613281 2 479.243067 956.47158 -0.13692 -6.562E-05 0.62905 0.00030147 0.49213 0.00023585 479.24313345198635 33.232 0.23433 33.073 32.936 33.171 -0.15918 15 9 2 0 0 0 0.28023 1 17321 17321 18.146 8.0724 1 1202600 36610 7037 24314 24793 43156 43156 -0.008396722793804656 LPVNSHGSF 9 Unmodified _LPVNSHGSF_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2435913085938 2 479.243067 956.47158 1.2753 0.0006112 0.62741 0.00030068 1.9027 0.00091188 479.2429754524186 37.709 0.28113 33.34 33.22 33.501 -4.3689 21 16 2 0 0 0 0.039985 1 22117 22117 49.933 24.534 1 10558000 36611 7037 24314 24793 43157 43157 -0.008396722793804656 LPVNSHGSF 9 Unmodified _LPVNSHGSF_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 479.243067 956.47158 -0.41151 -0.00019722 -0.33053 -0.0001584 -0.74204 -0.00035562 479.24241598220755 33.174 0.13427 33.174 33.109 33.243 0 -0.021898 -0.00083002 NaN 49.933 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1386400 36612 7037 24314 24793 -0.008396722793804656 LPVPAFNVI 9 Unmodified _LPVPAFNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1;ENST00000521659.5_2_17:4855435-4858958:+|nuORF;nc|ENSG00000108515|P13929-3|ENO3;ENSG00000108515|ENST00000519602|ENO3;nc|ENSG00000111674|P09104-2|ENO2;ENSG00000111674|ENST00000229277|ENO2 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2921447753906 2 485.292028 968.569503 0.94486 0.00045853 0.0097276 4.7207E-06 0.95459 0.00046325 485.2918217531337 99.977 0.11457 93.801 93.74 93.855 -6.1757 11 7 2 0 0 0 0.068777 1 66756 66756 40.449 13.565 1 16000000 36613 1135 24315 24794 43158 43158 0.08396136316616776 LPVPDPILL 9 Unmodified _LPVPDPILL_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.6095581054688 1 976.607746 975.600469 0.12915 0.00012613 2.3564 0.0023013 2.4855 0.0024274 976.6085344823028 97.839 0.079025 97.839 97.789 97.868 0 4 2 2 0 0 0 0.28047 1 54062 54062 18.135 5.6034 1 205370 36614 4327 24316 24795 43159 43159 0.11169289630868207 LPVPDPILL 9 Unmodified _LPVPDPILL_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.6051635742188 1 976.607746 975.600469 0.25564 0.00024966 2.2292 0.0021771 2.4849 0.0024268 976.6096451094302 98.172 0.27717 97.973 97.847 98.124 -0.19896 23 9 3 0 0 0 0.0090851 2 53590 53590;53691 85.357 21.12 1 2326500 36615 4327 24316 24795 43160;43161 43160 0.11169289630868207 LPVPDPILL 9 Unmodified _LPVPDPILL_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.6057739257812 1 976.607746 975.600469 1.1892 0.0011614 1.3921 0.0013595 2.5813 0.0025209 976.6095813350425 100.79 0.11409 94.616 94.556 94.67 -6.1757 18 7 3 0 0 0 0.0021514 1 67472 67472 131.3 45.941 1 95489000 36616 4327 24316 24795 43162 43162 0.11169289630868207 LPVPDPILL 9 Unmodified _LPVPDPILL_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.8081970214844 2 488.807511 975.600469 1.3994 0.00068405 -0.17319 -8.4655E-05 1.2262 0.0005994 488.8073852217683 100.79 0.14284 94.617 94.528 94.67 -6.1757 26 9 4 0 0 0 0.03327 1 67473 67473 53.576 2.7205 1 177820000 36617 4327 24316 24795 43163 43163 0.11169289630868207 LPVPMDAAL 9 Oxidation (M) _LPVPM(Oxidation (M))DAAL_ LPVPM(1)DAAL LPVPM(47)DAAL 0 0 1 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7522277832031 2 471.751879 941.489204 0.46374 0.00021877 -1.9782E-05 -9.3324E-09 0.46372 0.00021876 471.7519521503357 58.194 0.30395 58.194 58.036 58.34 0 21 11 2 0 0 0 0.045537 1 32382 32382 46.921 29.979 1 4116700 36618 2810 24317 24796 43164 43164 490 0.016119069312594547 LPVPMDAAL 9 Unmodified _LPVPMDAAL_ 0 0 0 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7550659179688 2 463.754421 925.494289 0.61012 0.00028294 0.07652 3.5486E-05 0.68664 0.00031843 463.7543035086397 82.721 0.44161 76.545 76.305 76.747 -6.1757 30 25 2 0 0 0 0.045537 1 54290 54290 46.921 25.174 1 11551000 36619 2810 24317 24797 43165 43165 0.028562107938682857 LPVPNLDPDTY 11 Unmodified _LPVPNLDPDTY_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.3148193359375 2 622.313886 1242.61322 -0.093088 -5.793E-05 1.2358 0.00076904 1.1427 0.00071111 622.3142077290593 71.122 0.19508 71.122 71.019 71.214 0 11 7 2 0 0 0 0.69316 1 39610 39610 4.897 1.9018 1 529290 36620 5164 24318 24798 43166 43166 0.00161656232421592 LPVPNLDPDTY 11 Unmodified _LPVPNLDPDTY_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3155517578125 2 622.313886 1242.61322 0.50299 0.00031302 0.89605 0.00055763 1.399 0.00087064 622.3141278272095 71.736 0.31917 71.26 71.022 71.341 -0.47609 18 12 2 0 0 0 0.50515 1 39226 39226 16.149 8.8599 1 560180 36621 5164 24318 24798 43167 43167 0.00161656232421592 LPVPQGILF 9 Unmodified _LPVPQGILF_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.3009033203125 2 492.299853 982.585153 2.3913 0.0011772 2.7841 0.0013706 5.1754 0.0025478 492.3017792718691 95.264 0.48763 95.268 94.942 95.43 0.004158 26 17 2 0 0 0 0.2001 1 52962 52962 23.148 5.0134 1 917110 36622 7664 24319 24799 43168 43168 0.09316422833671822 LPVPQGILF 9 Unmodified _LPVPQGILF_ 0 0 0 nc|ENSG00000167741|Q6P531-2|GGT6;nc|ENSG00000167741|Q6P531|GGT6;ENSG00000167741|ENST00000381550|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3001708984375 2 492.299853 982.585153 1.1414 0.00056189 2.6127 0.0012862 3.754 0.0018481 492.30189458446694 100.36 0.1878 94.182 94.103 94.291 -6.1757 15 11 2 0 0 0 0.12841 1 67120 67120 30.225 1.738 1 10757000 36623 7664 24319 24799 43169 43169 0.09316422833671822 LPVPSGVAF 9 Unmodified _LPVPSGVAF_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7564392089844 2 443.755278 885.496004 0.81149 0.0003601 0.50174 0.00022265 1.3132 0.00058275 443.75547239126746 80.713 0.12668 74.537 74.479 74.606 -6.1757 9 6 2 0 0 0 0.12841 1 52992 52992 30.225 1.738 1 6009300 36624 2166 24320 24800 43170 43170 0.0486758787413919 LPVPVIPSF 9 Unmodified _LPVPVIPSF_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7948913574219 2 484.794404 967.574254 2.688 0.0013031 -2.4171 -0.0011718 0.27085 0.00013131 484.793267238229 96.855 0.20538 96.848 96.724 96.929 -0.007019 13 7 2 0 0 0 0.027803 1 53800 53800 56.541 16.093 1 2051500 36625 16193 24321 24801 43171 43171 0.08917020459375635 LPVPVIPSF 9 Unmodified _LPVPVIPSF_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7946166992188 2 484.794404 967.574254 0.91488 0.00044353 0.44081 0.0002137 1.3557 0.00065723 484.79434167828305 100.51 0.11862 94.337 94.27 94.389 -6.1757 15 6 3 0 0 0 0.027803 1 67253 67253 56.541 16.093 1 29988000 36626 16193 24321 24801 43172 43172 0.08917020459375635 LPVPVLETY 9 Unmodified _LPVPVLETY_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1030.582641601562 1 1030.58192 1029.57465 0.84724 0.00087315 -1.6029 -0.0016519 -0.75565 -0.00077876 1030.5800175781121 79.955 0.25967 79.465 79.354 79.614 -0.48932 11 9 2 0 0 0 0.010877 1 43793 43793 77.984 33.577 1 727990 36627 6571 24322 24802 43173 43173 0.061043953885928204 LPVQTPLAPDE 11 Unmodified _LPVQTPLAPDE_ 0 0 0 REV__nc|ENSG00000122966|O14578|CIT REV__nc|ENSG00000122966|O14578|CIT MSMS AL20221201_MKP_PDAC_01 4 590.3142700195312 2 590.316428 1178.6183 NaN NaN NaN NaN NaN NaN NaN 46.776 1 41.695 41.195 42.195 -5.0805 0 0 0 0.080715 1 28958 28958 53.833 1.5644 1 + 36628 19364 24323 24803 43174 43174 0.036139600950718886 LPVRAPLSTL 10 Unmodified _LPVRAPLSTL_ 0 0 0 nc|ENSG00000125968|P41134-2|ID1;ENSG00000125968|ENST00000376112|ID1 nc|ENSG00000125968|P41134-2|ID1 nc|ENSG00000125968|P41134-2|ID1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2953491210938 2 533.834591 1065.65463 0.44214 0.00023603 -1.9962 -0.0010656 -1.5541 -0.00082961 534.335241499636 59.024 0.20517 58.963 58.86 59.065 -0.060719 15 9 2 0 0 0 0.20646 1 32184 32184 29.841 11.694 1 1902000 36629 3916 24324 24804 43175 43175 0.12442881782408222 LPVRFQGPASF 11 Unmodified _LPVRFQGPASF_ 0 0 0 ENST00000222345.10_1_19:38571927-38572134:+|nuORF ENST00000222345.10_1_19:38571927-38572134:+|nuORF ENST00000222345.10_1_19:38571927-38572134:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.83447265625 2 609.835123 1217.65569 0.43253 0.00026377 -0.238 -0.00014514 0.19453 0.00011863 609.834831399352 61.806 0.27994 61.774 61.608 61.888 -0.032787 23 13 2 0 0 0 5.2517E-06 1 33729 33729 93.938 62.67 1 5126000 36630 11036 24325 24805 43176 43176 0.05557096151301266 LPVRLANIM 9 Unmodified _LPVRLANIM_ 0 0 0 ENSG00000005882|ENST00000503176|PDK2;ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF;ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1 ENSG00000005882|ENST00000503176|PDK2;ENSG00000152256|ENST00000282077|PDK1 ENSG00000005882|ENST00000503176|PDK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8095703125 2 513.810062 1025.60557 0.7047 0.00036208 -1.8431 -0.00094702 -1.1384 -0.00058494 513.8089054878369 67.201 0.2153 67.219 67.123 67.338 0.018028 22 10 3 0 0 0 0.14602 1 36895 36895 28.487 1.6032 1 3346000 36631 318;6176 24326 24806 43177 43177 0.09379270221802471 LPVRLATAM 9 Oxidation (M) _LPVRLATAM(Oxidation (M))_ LPVRLATAM(1) LPVRLATAM(66) 0 0 1 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.28857421875 2 494.28642 986.558287 0.53423 0.00026406 1.4577 0.00072053 1.9919 0.00098459 494.28746207378924 40.21 0.31461 39.913 39.735 40.05 -0.29716 35 14 3 0 0 0 0.017075 1 21226 21226 66.457 22.598 1 5252300 36632 8699 24327 24807 43178 43178 1470 0.06446990950826148 LPVRLATAM 9 Oxidation (M) _LPVRLATAM(Oxidation (M))_ LPVRLATAM(1) LPVRLATAM(100) 0 0 1 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2870483398438 2 494.28642 986.558287 0.54963 0.00027167 0.86594 0.00042802 1.4156 0.0006997 494.28672487887684 39.871 0.35889 39.876 39.668 40.026 0.0050545 54 16 4 0 0 0 0.0087873 2 21288 21186;21288 103.35 51.085 1 15468000 36633 8699 24327 24807 43179;43180 43180 1470 0.06446990950826148 LPVRLATAM 9 Unmodified _LPVRLATAM_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2892150878906 2 486.288963 970.563372 0.71529 0.00034784 -0.48538 -0.00023603 0.22991 0.0001118 486.28864232545436 52.165 0.20275 52.106 52.027 52.229 -0.058918 17 9 2 0 0 0 0.05483 1 28276 28276 43.772 13.136 1 1874900 36634 8699 24327 24808 43181 43181 0.07691294813446348 LPVRLATAM 9 Unmodified _LPVRLATAM_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2895202636719 2 486.288963 970.563372 1.3157 0.00063982 0.093596 4.5515E-05 1.4093 0.00068533 486.28900980521166 58.469 0.50937 52.394 52.109 52.618 -6.0745 54 27 2 0 0 0 0.0087873 2 37338 37338;37457 103.35 51.085 1 72630000 36635 8699 24327 24808 43182;43183 43182 0.07691294813446348 LPVRSWDY 8 Unmodified _LPVRSWDY_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7427978515625 2 518.266542 1034.51853 -0.28842 -0.00014948 0.39708 0.00020579 0.10865 5.6312E-05 518.2667503695308 34.967 0.28311 34.967 34.846 35.129 0 32 14 3 0 0 0 8.7369 1 18521 18521 14.582 8.8213 1 11866000 + 36636 17659 24328 24809 43184 43184 0.002651872717478909 LPVRTWTQTY 10 Unmodified _LPVRTWTQTY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.8388671875 2 632.837862 1263.66117 0.32685 0.00020684 -0.7419 -0.0004695 -0.41505 -0.00026266 632.8384771483535 48.588 0.41426 48.544 48.239 48.654 -0.04369 53 20 4 0 0 0 0.048562 1 26184 26184 67.838 14.434 1 10205000 36637 4347 24329 24810 43185 43185 0.03988774943127282 LPVRTWTQTY 10 Unmodified _LPVRTWTQTY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8389892578125 2 632.837862 1263.66117 0.58106 0.00036772 -0.49859 -0.00031553 0.082468 5.2189E-05 632.8378226533079 54.577 0.44323 48.712 48.5 48.943 -5.8653 58 27 3 0 0 0 0.010306 2 34580 34580;34714 86.332 22.954 1 54131000 36638 4347 24329 24810 43186;43187 43186 0.03988774943127282 LPVRVLPRR 9 Unmodified _LPVRVLPRR_ 0 0 0 ENSG00000188996|ENST00000380907|HUS1B ENSG00000188996|ENST00000380907|HUS1B ENSG00000188996|ENST00000380907|HUS1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.2485961914062 3 369.248737 1104.72438 NaN NaN NaN NaN NaN NaN NaN 58.881 1 58.39 57.89 58.89 -0.49079 0 0 0 0.86031 1 32027 32027 0.23584 0 1 36639 9718 24330 24811 43188 43188 0.17620805241676862 LPVRVYTGF 9 Unmodified _LPVRVYTGF_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3007202148438 2 526.300384 1050.58622 0.62229 0.00032751 -0.1769 -9.3103E-05 0.44539 0.00023441 526.3006629027448 58.364 0.25705 58.304 58.195 58.452 -0.060719 32 12 3 0 0 0 0.016448 1 31784 31784 82.529 36.508 1 4904600 36640 1161 24331 24812 43189 43189 0.06294637202563536 LPVRYLQEF 9 Unmodified _LPVRYLQEF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8252563476562 2 582.824224 1163.63389 0.56265 0.00032792 1.0206 0.00059483 1.5832 0.00092275 582.8248914520253 64.15 0.28706 63.665 63.492 63.779 -0.48512 25 13 2 0 0 0 0.030212 1 35027 35027 60.074 30.992 1 4331400 36641 16251 24332 24813 43190 43190 0.058622914027409934 LPVRYLQEF 9 Unmodified _LPVRYLQEF_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.824224 1163.63389 1.2634 0.00073636 0.36891 0.00021501 1.6323 0.00095137 582.824091254883 63.659 0.33015 63.648 63.552 63.882 -0.010532 -0.0081882 -0.00043538 NaN 60.074 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 7185800 36642 16251 24332 24813 0.058622914027409934 LPVSAIRSGY 10 Unmodified _LPVSAIRSGY_ 0 0 0 nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8004150390625 2 531.800749 1061.58694 -0.14724 -7.8304E-05 0.80579 0.00042852 0.65855 0.00035022 531.8007559644974 41.506 0.15081 41.504 41.422 41.573 -0.0017929 13 6 3 0 0 0 0.20195 1 22209 22209 33.445 4.3633 1 3607900 36643 6036 24333 24814 43191 43191 0.05861431851622001 LPVSAIRSGY 10 Unmodified _LPVSAIRSGY_ 0 0 0 nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 MSMS AL20221201_MKP_PDAC_01 4 531.8016967773438 2 531.800749 1061.58694 NaN NaN NaN NaN NaN NaN NaN 47.106 1 42.025 41.525 42.525 -5.0805 0 0 0 0.1448 1 29202 29202 47.594 9.4432 1 36644 6036 24333 24814 43192 43192 0.05861431851622001 LPVSAIRSGY 10 Unmodified _LPVSAIRSGY_ 0 0 0 nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 nc|ENSG00000149782|Q01970-2|PLCB3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.800749 1061.58694 -0.36984 -0.00019668 1.0479 0.00055728 0.67807 0.0003606 531.8010196855521 41.789 0.14343 41.482 41.411 41.554 -0.30682 -0.010878 0.00016084 NaN 33.445 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3394100 36645 6036 24333 24814 0.05861431851622001 LPVSDEILF 9 Unmodified _LPVSDEILF_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7848510742188 2 516.784233 1031.55391 0.29151 0.00015065 0.12959 6.697E-05 0.4211 0.00021762 516.7842131330253 86.461 0.38463 86.461 86.269 86.654 0 47 17 4 0 0 0 0.41742 2 47940 47844;47940 11.64 1.187 1 1337500 36646 5169 24334 24815 43193;43194 43194 0.039398050088948366 LPVSDRHVY 9 Unmodified _LPVSDRHVY_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5287475585938 3 362.529458 1084.56654 -0.50667 -0.00018368 0.60862 0.00022064 0.10195 3.6959E-05 362.52965119191134 26.33 0.22051 26.33 26.208 26.428 0 25 10 3 0 0 0 0.15471 1 13518 13518 26.021 15.221 1 4393700 36647 5274 24335 24816 43195 43195 0.027642611918054172 LPVSDRHVY 9 Unmodified _LPVSDRHVY_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2903442382812 2 543.290548 1084.56654 -0.37393 -0.00020315 -0.43363 -0.00023559 -0.80756 -0.00043874 543.2902591905452 26.358 0.18256 26.358 26.246 26.428 0 16 8 3 0 0 0 0.21643 1 13533 13533 21.537 10.713 1 1025200 36648 5274 24335 24816 43196 43196 0.027642611918054172 LPVSDRHVY 9 Unmodified _LPVSDRHVY_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MSMS AL20221201_MKP_PDAC_01 4 362.5299072265625 3 362.529458 1084.56654 NaN NaN NaN NaN NaN NaN NaN 29.887 1 26.586 26.086 27.086 -3.3016 0 0 0 0.074615 1 16833 16833 38.615 24.209 1 36649 5274 24335 24816 43197 43197 0.027642611918054172 LPVSEQQERAF 11 Unmodified _LPVSEQQERAF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.3348999023438 2 652.335684 1302.65681 0.087907 5.7345E-05 -0.9077 -0.00059213 -0.81979 -0.00053478 652.3350615352877 38.22 0.32503 38.22 37.988 38.313 0 44 19 3 0 0 0 5.0591E-09 2 20433 20317;20433 114.19 74.237 1 13249000 36650 9391 24336 24817 43198;43199 43199 0.01759265729560866 LPVSEQQERAF 11 Unmodified _LPVSEQQERAF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3363647460938 2 652.335684 1302.65681 0.58219 0.00037978 0.078775 5.1388E-05 0.66097 0.00043117 652.3358374838762 43.786 0.39728 39.021 38.791 39.188 -4.7648 74 24 4 0 0 0 7.4143E-37 2 26671 26529;26671 177.58 137.63 1 29750000 36651 9391 24336 24817 43200;43201 43201 0.01759265729560866 LPVSGNLIDLY 11 Unmodified _LPVSGNLIDLY_ 0 0 0 nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF nc|ENSG00000187098|O75030-11|MITF nc|ENSG00000187098|O75030-11|MITF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3350830078125 2 602.334621 1202.65469 0.48513 0.00029221 0.85534 0.0005152 1.3405 0.00080741 602.3351289462898 86.874 0.35013 86.37 86.191 86.541 -0.50318 21 13 2 0 0 0 0.42108 1 47499 47499 20.415 3.3016 1 701990 36652 9538 24337 24818 43202 43202 0.06146836991774762 LPVSGNLLDVY 11 Unmodified _LPVSGNLLDVY_ 0 0 0 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.82861328125 2 595.326796 1188.63904 0.6217 0.00037012 -0.83772 -0.00049872 -0.21602 -0.0001286 595.3261543196226 82.952 0.40868 82.454 82.263 82.672 -0.49751 42 16 3 0 0 0 0.21511 2 45379 45379;45483 31.268 17.362 1 3984000 36653 976 24338 24819 43203;43204 43203 0.05226550474708347 LPVSGNLLDVY 11 Unmodified _LPVSGNLLDVY_ 0 0 0 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 ENSG00000068323|ENST00000315869|TFE3 MSMS AL20221201_MKP_PDAC_01 4 595.3283081054688 2 595.326796 1188.63904 NaN NaN NaN NaN NaN NaN NaN 91.732 1 85.557 85.057 86.057 -6.1757 0 0 0 0.15644 1 60643 60643 41.956 12.874 1 36654 976 24338 24819 43205 43205 0.05226550474708347 LPVSKPESY 9 Unmodified _LPVSKPESY_ 0 0 0 nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A;ENST00000578258.5_1_17:15604467-15614659:+|nuORF;ENST00000585171.5_1_17:15603407-15638248:+|nuORF nc|ENSG00000187607|Q9HBT8-2|ZNF286A nc|ENSG00000187607|Q9HBT8-2|ZNF286A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2742309570312 2 510.274032 1018.53351 -0.37377 -0.00019073 -0.07747 -3.9531E-05 -0.45124 -0.00023026 510.2742403302246 29.951 0.2038 29.951 29.833 30.036 0 28 9 4 0 0 0 0.018301 1 15518 15518 65.235 27.261 1 4729000 36655 9570 24339 24820 43206 43206 0.02498634349092299 LPVSKPESY 9 Unmodified _LPVSKPESY_ 0 0 0 nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A;ENST00000578258.5_1_17:15604467-15614659:+|nuORF;ENST00000585171.5_1_17:15603407-15638248:+|nuORF nc|ENSG00000187607|Q9HBT8-2|ZNF286A nc|ENSG00000187607|Q9HBT8-2|ZNF286A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2755126953125 2 510.274032 1018.53351 0.44006 0.00022455 1.5498 0.00079081 1.9898 0.0010154 510.27505554618716 29.963 0.15573 29.883 29.792 29.948 -0.080429 9 5 2 0 0 0 0.30202 1 15561 15561 17.113 8.3675 1 942180 36656 9570 24339 24820 43207 43207 0.02498634349092299 LPVSKPESY 9 Unmodified _LPVSKPESY_ 0 0 0 nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A;ENST00000578258.5_1_17:15604467-15614659:+|nuORF;ENST00000585171.5_1_17:15603407-15638248:+|nuORF nc|ENSG00000187607|Q9HBT8-2|ZNF286A nc|ENSG00000187607|Q9HBT8-2|ZNF286A MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2742309570312 2 510.274032 1018.53351 0.64054 0.00032685 -0.18941 -9.6652E-05 0.45113 0.0002302 510.7754147857529 34.326 0.36815 30.285 30.143 30.511 -4.0411 36 20 2 0 0 0 0.011968 2 19760 19760;19887 74.929 26.583 1 21565000 36657 9570 24339 24820 43208;43209 43208 0.02498634349092299 LPVSPRLQL 9 Unmodified _LPVSPRLQL_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8214416503906 2 511.821484 1021.62842 0.59809 0.00030611 -0.54282 -0.00027783 0.055268 2.8287E-05 511.82116751271394 60.148 0.80121 60.095 59.499 60.3 -0.053059 99 41 4 0 0 0 0.022193 1 32718 32718 61.357 16.95 1 180800000 36658 2314;1437;3789;1275 24340 24821 43210 43210 0.11846612610952434 LPVSPRLQL 9 Unmodified _LPVSPRLQL_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8220825195312 2 511.821484 1021.62842 0.57464 0.00029411 0.17284 8.8466E-05 0.74748 0.00038258 511.82156055442715 66.012 0.90169 59.836 59.43 60.332 -6.1757 137 52 3 0 0 0 0.07916 3 42933 42788;42933;43073 37.974 6.5175 1 186530000 36659 2314;1437;3789;1275 24340 24821 43211;43212;43213 43212 0.11846612610952434 LPVSSIPIY 9 Unmodified _LPVSSIPIY_ 0 0 0 nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7896423339844 2 494.789318 987.564084 NaN NaN NaN NaN NaN NaN NaN 75.545 1 75.068 74.568 75.568 -0.47714 0 0 0 0.57317 1 41355 41355 13.508 4.9146 1 36660 5047 24341 24822 43214 43214 0.0698041273412855 LPVSVSREL 9 Unmodified _LPVSVSREL_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2968139648438 2 500.295299 998.576045 0.41573 0.00020799 0.26656 0.00013336 0.68229 0.00034135 500.295457167793 46.913 0.23896 46.576 46.442 46.681 -0.33664 27 11 3 0 0 0 0.033587 1 25098 25098 53.404 9.5457 1 8000600 36661 9157 24342 24823 43215 43215 0.07670029477333173 LPVSVSREL 9 Unmodified _LPVSVSREL_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2958984375 2 500.295299 998.576045 1.0404 0.00052051 -0.237 -0.00011857 0.80341 0.00040194 500.29519310944266 52.647 0.31718 46.913 46.707 47.024 -5.7345 29 17 2 0 0 0 0.044011 1 33155 33155 47.749 3.8904 1 49841000 36662 9157 24342 24823 43216 43216 0.07670029477333173 LPVTDASSVF 10 Unmodified _LPVTDASSVF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2715454101562 2 518.27149 1034.52843 0.30465 0.00015789 0.058992 3.0574E-05 0.36364 0.00018847 518.2715284649655 64.054 0.45333 64.054 63.824 64.277 0 35 18 2 0 0 0 0.011274 1 35758 35758 85.357 55.132 1 6295200 36663 5669 24343 24824 43217 43217 0.012543304864720994 LPVTDASSVF 10 Unmodified _LPVTDASSVF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2716674804688 2 518.27149 1034.52843 0.45672 0.00023671 -0.15238 -7.8976E-05 0.30434 0.00015773 518.2712621260825 64.625 0.62422 64.14 63.908 64.532 -0.48512 74 28 4 0 0 0 0.021369 2 35235 35235;35342 74.423 47.539 1 8958100 36664 5669 24343 24824 43218;43219 43218 0.012543304864720994 LPVTDASSVF 10 Unmodified _LPVTDASSVF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7657470703125 2 518.27149 1034.52843 1.1368 0.00058917 -2.4993 -0.0012953 -1.3625 -0.00070616 518.2716009984078 71.789 0.66283 65.613 65.151 65.814 -6.1757 63 35 3 0 0 0 0.063761 2 46855 46855;46998 54.774 24.549 1 96724000 36665 5669 24343 24824 43220;43221 43220 0.012543304864720994 LPVTDTSSAY 10 Unmodified _LPVTDTSSAY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20221201_MKP_PDAC_01 4 527.2578735351562 2 527.258579 1052.50261 NaN NaN NaN NaN NaN NaN NaN 46.526 1 41.446 40.946 41.946 -5.0805 0 0 0 0.48706 1 28762 28762 26.884 6.0124 1 36666 5669 24344 24825 43222 43222 -0.02154563755811978 LPVTDTSSV 9 Unmodified _LPVTDTSSV_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.478271484375 1 918.477854 917.470577 0.068281 6.2714E-05 1.1312 0.001039 1.1995 0.0011017 918.4781064518058 37.775 0.26083 37.775 37.625 37.885 0 16 12 2 0 0 0 0.012148 1 20120 20120 74.423 16.951 1 1044900 36667 5669 24345 24826 43223 43223 0.008540685610455512 LPVTEAQQL 9 Unmodified _LPVTEAQQL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7812194824219 2 499.779482 997.544411 0.53265 0.00026621 2.7259 0.0013624 3.2586 0.0016286 499.78041083461346 74.757 0.24368 74.281 74.133 74.376 -0.47588 23 9 3 0 0 0 0.40476 1 40929 40929 12.241 1.1262 1 755580 36668 3160 24346 24827 43224 43224 0.04554036723379795 LPVTPILEGF 10 Unmodified _LPVTPILEGF_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.3157348632812 2 543.3157 1084.61685 0.14586 7.9246E-05 -0.53305 -0.00028962 -0.3872 -0.00021037 543.3156222519667 97.309 0.33388 97.066 96.886 97.22 -0.24277 34 14 3 0 0 0 0.14917 1 53132 53132 39.957 14.558 1 1324900 36669 8488 24347 24828 43225 43225 0.07792370796960313 LPVTPILEGF 10 Unmodified _LPVTPILEGF_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3158569335938 2 543.3157 1084.61685 0.74579 0.0004052 0.002206 1.1986E-06 0.748 0.0004064 543.3156592150481 100.52 0.13464 94.346 94.254 94.389 -6.1757 17 7 3 0 0 0 0.024981 1 67230 67230 71.134 37.031 1 96156000 36670 8488 24347 24828 43226 43226 0.07792370796960313 LPVTQQMTEM 10 2 Oxidation (M) _LPVTQQM(Oxidation (M))TEM(Oxidation (M))_ LPVTQQM(1)TEM(1) LPVTQQM(80)TEM(80) 0 0 2 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2787475585938 2 605.278131 1208.54171 -0.73964 -0.00044769 -0.021214 -1.284E-05 -0.76085 -0.00046053 605.2783328450752 26.418 0.26646 26.418 26.263 26.53 0 33 12 3 0 0 0 0.015688 1 13546 13546 79.596 39.647 1 4609200 36671 2493 24348 24829 43227 43227 424;425 -0.05421922788082156 LPVTQQMTEM 10 Unmodified _LPVTQQMTEM_ 0 0 0 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.281982421875 2 589.283217 1176.55188 0.97218 0.00057289 1.3471 0.00079383 2.3193 0.0013667 589.284210314161 61.14 0.34286 54.992 54.793 55.136 -6.1478 37 17 3 0 0 0 7.8533E-07 2 39307 39307;39451 131.27 85.568 1 48069000 36672 2493 24348 24830 43228;43229 43228 -0.02933315062841757 LPVVDFNEM 9 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ LPVVDFNEM(1) LPVVDFNEM(68) 0 0 1 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2573852539062 2 540.257525 1078.5005 0.59062 0.00031909 -0.98419 -0.00053172 -0.39357 -0.00021263 540.2572073849832 60.614 0.70396 60.614 60.225 60.929 0 83 30 4 0 0 0 0.015445 2 33756 33756;33857 68.081 45.344 1 32522000 36673 3188 24349 24831 43230;43231 43230 564 -0.03561315765273321 LPVVDFNEM 9 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ LPVVDFNEM(1) LPVVDFNEM(46) 0 0 1 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2578735351562 2 540.257525 1078.5005 -0.44557 -0.00024072 0.32165 0.00017378 -0.12392 -6.6948E-05 540.2577946955342 61.264 0.47828 60.775 60.617 61.095 -0.48932 52 22 3 0 0 0 0.047196 2 33422 33321;33422 46.021 46.021 1 9940800 36674 3188 24349 24831 43232;43233 43233 564 -0.03561315765273321 LPVVDFNEM 9 Oxidation (M) _LPVVDFNEM(Oxidation (M))_ 0 0 1 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.257525 1078.5005 0.31112 0.00016808 0.47582 0.00025706 0.78693 0.00042515 540.2571019303955 60.89 0.27923 60.847 60.708 60.987 -0.04351 0.10149 0.00053425 NaN 68.081 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1741500 36675 3188 24349 24831 564 -0.03561315765273321 LPVVGHTD 8 Unmodified _LPVVGHTD_ 0 0 0 ENSG00000179698|ENST00000323662|WDR97;nc|ENSG00000179698|A6NE52-2|WDR97;ENST00000533108.1_1_8:145164641-145165891:+|nuORF ENSG00000179698|ENST00000323662|WDR97 ENSG00000179698|ENST00000323662|WDR97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.445068359375 1 837.446494 836.439217 0.44578 0.00037331 -0.37566 -0.00031459 0.070119 5.8721E-05 837.4460599967524 79.547 0.39151 79.058 78.821 79.212 -0.48932 29 16 2 0 0 0 0.71616 1 43599 43599 15.768 0 1 1460500 36676 8853 24350 24832 43234 43234 0.01445540317592986 LPVVMETDH 9 Unmodified _LPVVMETDH_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.8074951171875 2 520.757692 1039.50083 0.25051 0.00013046 -4.1525 -0.0021625 -3.902 -0.002032 520.7554180932682 99.598 0.19737 99.441 99.328 99.525 -0.1575 11 6 2 0 0 0 0.19613 1 54366 54366 12.532 0.89125 1 278170 36677 2747 24351 24833 43235 43235 -0.017338960454253538 LPVVPKATY 9 Unmodified _LPVVPKATY_ 0 0 0 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2973022460938 2 494.29731 986.580068 0.061758 3.0527E-05 0.17756 8.7767E-05 0.23932 0.00011829 494.29734021167553 45.001 0.25426 44.676 44.527 44.782 -0.32425 30 13 4 0 0 0 0.013041 1 23978 23978 71.922 31.965 1 94399000 36678 8847 24352 24834 43236 43236 0.08624118971022199 LPVVPKATY 9 Unmodified _LPVVPKATY_ 0 0 0 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2980651855469 2 494.29731 986.580068 0.085993 4.2506E-05 0.19678 9.7268E-05 0.28277 0.00013977 494.2972282948595 44.714 0.22321 44.691 44.574 44.798 -0.022064 25 11 3 0 0 0 0.010611 1 23977 23977 78.728 42.601 1 19585000 36679 8847 24352 24834 43237 43237 0.08624118971022199 LPVVPKATY 9 Unmodified _LPVVPKATY_ 0 0 0 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2974548339844 2 494.29731 986.580068 1.0842 0.00053593 -0.24683 -0.00012201 0.83739 0.00041392 494.2971036993575 50.654 0.51929 45.005 44.744 45.264 -5.649 97 32 4 0 0 0 0.013041 3 31957 31689;31817;31957 71.922 30.267 1 362650000 36680 8847 24352 24834 43238;43239;43240 43240 0.08624118971022199 LPVVSSLADVY 11 Unmodified _LPVVSSLADVY_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8220825195312 2 581.821347 1161.62814 0.63921 0.00037191 0.50858 0.0002959 1.1478 0.00066781 581.8216868450062 82.055 0.50566 81.559 81.236 81.742 -0.4952 52 19 4 0 0 0 0.0033239 2 44934 44839;44934 78.149 25.881 1 3507900 36681 5110 24353 24835 43241;43242 43242 0.053791481004282105 LPVVSSLADVY 11 Unmodified _LPVVSSLADVY_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8222045898438 2 581.821347 1161.62814 0.94083 0.0005474 0.96006 0.00055859 1.9009 0.001106 581.8218241538774 91.503 0.74757 85.327 84.975 85.723 -6.1757 108 41 3 0 0 0 1.2172E-08 4 60447 60322;60447;60571;60696 108 39.916 1 30453000 36682 5110 24353 24835 43243;43244;43245;43246 43244 0.053791481004282105 LPVWFTNNL 9 Unmodified _LPVWFTNNL_ 0 0 0 nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;nc|ENSG00000169760|Q8N2Q7|NLGN1 nc|ENSG00000169760|Q8N2Q7-2|NLGN1 nc|ENSG00000169760|Q8N2Q7-2|NLGN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.79931640625 2 552.297842 1102.58113 0.40085 0.00022139 -0.36517 -0.00020168 0.035675 1.9703E-05 552.2980395250152 52.562 0.79661 52.562 52.243 53.039 0 44 26 3 0 0 0 0.095405 2 29026 29026;29133 34.102 10.082 1 6305100 36683 7913 24354 24836 43247;43248 43247 0.03394333339952027 LPVWWLRGWR 10 Unmodified _LPVWWLRGWR_ 0 0 0 REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF REV__ENST00000302787.2_1_4:1814431-1814536:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.8883666992188 2 684.888024 1367.7615 NaN NaN NaN NaN NaN NaN NaN 86.211 1 86.211 85.711 86.711 0 0 0 0 0.98914 1 47758 47758 1.8442 0 1 + 36684 25343 24355 24837 43249 43249 0.0923247678745156 LPVYNAALKR 10 Unmodified _LPVYNAALKR_ 0 0 0 REV__ENSG00000105509|ENST00000540069|HAS1 REV__ENSG00000105509|ENST00000540069|HAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2346801757812 3 382.232752 1143.67643 0.30873 0.00011801 2.1658 0.00082784 2.4745 0.00094584 382.23365060192697 54.941 0.61609 54.872 54.522 55.138 -0.068737 88 30 4 0 0 0 0.56675 1 29749 29749 12.873 1.9736 1 14078000 + 36685 18430 24356 24838 43250 43250 0.11033686530981868 LPWAEFESL 9 Unmodified _LPWAEFESL_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2745361328125 2 546.274032 1090.53351 0.25408 0.00013879 -0.53024 -0.00028965 -0.27616 -0.00015086 546.2736236732429 92.309 0.29038 92.309 92.192 92.482 0 29 22 2 0 0 0 0.39863 1 51024 51024 12.532 3.9383 1 667880 36686 5406 24357 24839 43251 43251 -0.008133656509016873 LPWAEFESL 9 Unmodified _LPWAEFESL_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2744140625 2 546.274032 1090.53351 0.25369 0.00013859 -0.69322 -0.00037869 -0.43953 -0.0002401 546.2733418738534 92.837 0.36445 92.38 92.211 92.575 -0.4574 47 18 3 0 0 0 0.052168 2 50705 50705;50802 44.407 21.259 1 5685300 36687 5406 24357 24839 43252;43253 43252 -0.008133656509016873 LPWAEFESL 9 Unmodified _LPWAEFESL_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2752685546875 2 546.274032 1090.53351 0.27567 0.00015059 0.58206 0.00031796 0.85773 0.00046855 546.2742139229725 99.724 0.17783 93.549 93.46 93.638 -6.1757 31 11 4 0 0 0 0.019979 1 66473 66473 63.563 40.414 1 195630000 36688 5406 24357 24839 43254 43254 -0.008133656509016873 LPWAEFESL 9 Unmodified _LPWAEFESL_ 0 0 0 nc|ENSG00000142273|Q9ULV8-2|CBLC;ENSG00000142273|ENST00000647358|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC nc|ENSG00000142273|Q9ULV8-2|CBLC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.274032 1090.53351 1.4557 0.00079522 -0.25308 -0.00013825 1.2026 0.00065697 546.2737140234107 92.35 0.2865 92.381 92.208 92.494 0.030197 0.024072 0.00037213 NaN 44.407 18 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2191500 36689 5406 24357 24839 -0.008133656509016873 LPWAQSTGN 9 Unmodified _LPWAQSTGN_ 0 0 0 ENSG00000171723|ENST00000478722|GPHN;nc|ENSG00000171723|Q9NQX3|GPHN ENSG00000171723|ENST00000478722|GPHN ENSG00000171723|ENST00000478722|GPHN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2419738769531 2 487.240524 972.466495 0.99776 0.00048615 0.95034 0.00046305 1.9481 0.0009492 487.24074622731086 58.006 0.45382 57.94 57.775 58.229 -0.066036 32 22 2 0 0 0 0.49272 1 31569 31569 7.9102 0 1 4767600 36690 8131 24358 24840 43255 43255 -0.020839761420006653 LPWASTHSL 9 Unmodified _LPWASTHSL_ 0 0 0 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2657775878906 2 506.266542 1010.51853 0.90852 0.00045995 -1.1895 -0.00060222 -0.28101 -0.00014226 506.2659180218754 57.359 0.40024 51.332 51.079 51.48 -6.0275 40 21 2 0 0 0 0.10734 1 36568 36568 32.305 6.9062 1 50408000 36691 8041 24359 24841 43256 43256 0.01369187271757255 LPWDLLQVY 9 Unmodified _LPWDLLQVY_ 0 0 0 ENSG00000183246|ENST00000433039|RIMBP3C;ENSG00000274600|ENST00000620804|RIMBP3B ENSG00000183246|ENST00000433039|RIMBP3C ENSG00000183246|ENST00000433039|RIMBP3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.8120727539062 2 573.813325 1145.6121 0.42711 0.00024508 -1.5122 -0.00086772 -1.0851 -0.00062264 573.8122078227808 51.063 0.64694 50.65 50.17 50.817 -0.41351 65 31 4 0 0 0 0.43463 1 27564 27564 10.824 0.75 1 15094000 36692 9128 24360 24842 43257 43257 0.04511486654178043 LPWEDPSFQY 10 Unmodified _LPWEDPSFQY_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.7940673828125 2 641.292953 1280.57135 -0.33108 -0.00021232 1.6264 0.001043 1.2953 0.00083069 641.2939734824199 78.554 0.24834 78.068 77.99 78.238 -0.48596 19 9 3 0 0 0 0.67459 1 43036 43036 5.7319 2.7366 1 632940 36693 8783 24361 24843 43258 43258 -0.05770899456092593 LPWEDPSFQY 10 Unmodified _LPWEDPSFQY_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.2965087890625 2 641.292953 1280.57135 0.91872 0.00058917 0.73859 0.00047365 1.6573 0.0010628 641.2944137237521 86.015 0.4137 79.839 79.674 80.088 -6.1757 30 22 2 0 0 0 0.13391 1 56709 56709 41.84 23.693 1 12992000 36694 8783 24361 24843 43259 43259 -0.05770899456092593 LPWEEREKI 9 Unmodified _LPWEEREKI_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5520629882812 3 400.552151 1198.63462 -0.20548 -8.2306E-05 -0.37503 -0.00015022 -0.58052 -0.00023253 400.8861883592522 40.386 0.23509 40.386 40.236 40.471 0 26 11 3 0 0 0 0.20428 1 21676 21676 21.59 5.0243 1 6007600 36695 3348 24362 24844 43260 43260 0.04325086051812832 LPWEEREKI 9 Unmodified _LPWEEREKI_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.552978515625 3 400.552151 1198.63462 0.51938 0.00020804 1.3958 0.00055908 1.9152 0.00076712 400.5526142757012 45.168 0.36251 40.316 40.115 40.478 -4.852 47 24 2 0 0 0 0.13231 1 27653 27653 22.775 0 1 36133000 36696 3348 24362 24844 43261 43261 0.04325086051812832 LPWEEREKI 9 Unmodified _LPWEEREKI_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 400.552151 1198.63462 0.56002 0.00022432 0.35291 0.00014136 0.91293 0.00036567 400.5524165456349 40.798 0.24516 40.495 40.337 40.582 -0.30304 0.054657 0.00066212 NaN 21.59 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2713300 36697 3348 24362 24844 0.04325086051812832 LPWELPPL 8 Unmodified _LPWELPPL_ 0 0 0 REV__nc|ENSG00000101096|Q13469-5|NFATC2 REV__nc|ENSG00000101096|Q13469-5|NFATC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7782592773438 2 482.778754 963.542954 1.1951 0.00057699 0.50844 0.00024546 1.7036 0.00082246 482.7784832992749 50.289 0.28165 44.75 44.647 44.929 -5.5391 28 17 2 0 0 0 0.24071 1 31563 31563 63.563 7.5145 1 9772300 + 36698 18127 24363 24845 43262 43262 0.05972447425290284 LPWEVQRY 8 Unmodified _LPWEVQRY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2422485351562 2 545.787641 1089.56073 0.48579 0.00026514 -2.7901 -0.0015228 -2.3043 -0.0012577 545.7858872686642 53.156 0.20454 53.156 53.099 53.304 0 14 8 3 0 0 0 8.7369 1 29515 29515 14.838 6.6827 1 824140 36699 5216 24364 24846 43263 43263 0.01953162680160858 LPWEVQRY 8 Unmodified _LPWEVQRY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7882080078125 2 545.787641 1089.56073 0.27151 0.00014818 -0.25413 -0.0001387 0.01738 9.4859E-06 545.7876586017718 53.785 0.35485 53.332 53.166 53.521 -0.4523 55 17 4 0 0 0 0.44629 2 29068 29068;29175 39.957 14.558 1 43518000 36700 5216 24364 24846 43264;43265 43264 0.01953162680160858 LPWEVQRY 8 Unmodified _LPWEVQRY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7879028320312 2 545.787641 1089.56073 -0.15819 -8.6338E-05 0.12913 7.0479E-05 -0.029055 -1.5858E-05 545.7879443157249 53.435 0.25851 53.371 53.241 53.499 -0.063423 34 12 3 0 0 0 0.30525 1 28962 28962 54.774 29.374 1 29552000 36701 5216 24364 24846 43266 43266 0.01953162680160858 LPWEVQRY 8 Unmodified _LPWEVQRY_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7880859375 2 545.787641 1089.56073 1.0645 0.00058099 -0.46367 -0.00025307 0.60083 0.00032792 545.7873839964815 59.198 0.60111 53.123 52.851 53.452 -6.0745 61 33 2 0 0 0 0.25522 2 38111 37978;38111 61.357 21.4 1 254120000 36702 5216 24364 24846 43267;43268 43268 0.01953162680160858 LPWHMKMSGCL 11 Unmodified _LPWHMKMSGCL_ 0 0 0 nc|ENSG00000214198|Q6P2S7|TTC41P;nc|ENSG00000214198|Q6P2S7-2|TTC41P nc|ENSG00000214198|Q6P2S7|TTC41P nc|ENSG00000214198|Q6P2S7|TTC41P MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.8123168945312 2 651.811422 1301.60829 1.0157 0.00066207 -0.20033 -0.00013058 0.81541 0.00053149 651.8114801857778 90.965 0.58466 84.789 84.543 85.127 -6.1757 57 34 2 0 0 0 0.5229 1 60138 60138 15.248 3.0078 1 17698000 36703 16543 24365 24847 43269 43269 -0.030449657071585534 LPWHRREWEFP 11 Unmodified _LPWHRREWEFP_ 0 0 0 ENST00000439413.2_1_7:54850836-54872378:+|nuORF ENST00000439413.2_1_7:54850836-54872378:+|nuORF ENST00000439413.2_1_7:54850836-54872378:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 777.3981323242188 2 776.894035 1551.77352 1.3307 0.0010338 0.75786 0.00058878 2.0885 0.0016226 777.3961762234906 86.808 0.64078 80.632 80.358 80.999 -6.1757 81 34 3 0 0 0 0.71341 3 57139 57139;57263;57391 2.9952 0 1 21048000 36704 13376 24366 24848 43270;43271;43272 43270 0.01970048739963204 LPWIDNIAH 9 Unmodified _LPWIDNIAH_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74467717-74469013:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7876586914062 2 539.787641 1077.56073 0.35377 0.00019096 1.3165 0.00071061 1.6702 0.00090158 539.7890779057738 67.511 0.40678 67.029 66.802 67.208 -0.48218 25 17 2 0 0 0 0.25681 1 36926 36926 19.257 5.7491 1 1369800 36705 4158 24367 24849 43273 43273 0.02505162680131434 LPWIDNIAH 9 Unmodified _LPWIDNIAH_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74467717-74469013:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.787641 1077.56073 0.62962 0.00033986 -2.0126 -0.0010864 -1.383 -0.0007465 539.7866471436291 66.965 0.16498 66.983 66.917 67.082 0.018036 -0.023278 -0.0023657 NaN 19.257 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2117900 36706 4158 24367 24849 0.02505162680131434 LPWISEYI 8 Unmodified _LPWISEYI_ 0 0 0 ENST00000486360.1_1_1:203045208-203045709:+|nuORF ENST00000486360.1_1_1:203045208-203045709:+|nuORF ENST00000486360.1_1_1:203045208-203045709:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7748413085938 2 510.773668 1019.53278 NaN NaN NaN NaN NaN NaN NaN 61.749 1 61.749 61.249 62.249 0 0 0 0 0.94749 1 34428 34428 11.114 0.93107 1 36707 14183 24368 24850 43274 43274 0.023798397000405203 LPWKAFTY 8 Unmodified _LPWKAFTY_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2760009765625 2 513.276378 1024.5382 0.93953 0.00048224 -0.97117 -0.00049848 -0.031649 -1.6245E-05 513.2759291069801 65.401 0.32082 65.401 65.241 65.562 1.5259E-05 34 14 3 0 0 0 0.30525 1 35840 35840 54.774 30.1 1 16074000 36708 713 24369 24851 43275 43275 0.026915632825193825 LPWKAFTY 8 Unmodified _LPWKAFTY_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.280517578125 2 513.276378 1024.5382 0.8259 0.00042391 2.0959 0.0010758 2.9218 0.0014997 513.2779030489165 79.02 0.42921 72.845 72.611 73.04 -6.1757 35 23 2 0 0 0 0.56356 2 51742 51742;51790 29.082 3.6527 1 9740100 36709 713 24369 24851 43276;43277 43276 0.026915632825193825 LPWKAFTY 8 Unmodified _LPWKAFTY_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MSMS AL20221201_MKP_PDAC_01 4 513.2749633789062 2 513.276378 1024.5382 NaN NaN NaN NaN NaN NaN NaN 78.846 1 72.67 72.17 73.17 -6.1757 0 0 0 0.4392 1 51637 51637 48.346 5.3778 1 36710 713 24369 24851 43278 43278 0.026915632825193825 LPWKGRIVTF 10 Unmodified _LPWKGRIVTF_ 0 0 0 ENSG00000042980|ENST00000265769|ADAM28;ENST00000520448.5_1_8:24181385-24209525:+|nuORF ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2449951171875 3 406.244881 1215.71281 0.29945 0.00012165 0.33931 0.00013784 0.63876 0.00025949 406.24487608805947 58.759 0.31302 58.699 58.526 58.839 -0.060722 34 15 3 0 0 0 0.39689 1 32003 32003 21.799 16.016 1 3389000 36711 667 24370 24852 43279 43279 0.11358563427711488 LPWKGRIVTF 10 Unmodified _LPWKGRIVTF_ 0 0 0 ENSG00000042980|ENST00000265769|ADAM28;ENST00000520448.5_1_8:24181385-24209525:+|nuORF ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2455749511719 3 406.244881 1215.71281 1.2952 0.00052618 0.31511 0.00012801 1.6103 0.00065419 406.24502884180464 89.431 0.33799 83.255 83.058 83.396 -6.1757 31 18 2 0 0 0 0.053349 1 59034 59034 57.108 42.889 1 13274000 36712 667 24370 24852 43280 43280 0.11358563427711488 LPWLDKSIEF 10 Unmodified _LPWLDKSIEF_ 0 0 0 ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 MSMS AL20221201_MKP_PDAC_01 4 624.3378295898438 2 624.337164 1246.65977 NaN NaN NaN NaN NaN NaN NaN 98.196 1 92.02 91.52 92.52 -6.1757 0 0 0 0.021335 1 65107 65107 73.196 23.642 1 36713 9267 24371 24853 43281 43281 0.04631140854348814 LPWLMETLTY 10 Unmodified _LPWLMETLTY_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8258666992188 2 633.825575 1265.6366 NaN NaN NaN NaN NaN NaN NaN 79.777 1 79.288 78.788 79.788 -0.48932 0 0 0 0.96981 1 43697 43697 3.9444 0 1 36714 1517 24372 24854 43282 43282 0.014403787454057237 LPWLWWGSW 9 Unmodified _LPWLWWGSW_ 0 0 0 REV__ENSG00000015413|ENST00000690203|DPEP1 REV__ENSG00000015413|ENST00000690203|DPEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8741760253906 3 410.874677 1229.6022 -0.33675 -0.00013836 -0.83567 -0.00034336 -1.1724 -0.00048172 410.8741961181127 30.837 0.18863 30.867 30.737 30.925 0.030106 17 7 3 0 0 0 0.53666 1 16144 16144 2.9952 0.90923 1 872350 + 36715 17086 24373 24855 43283 43283 -0.0034165656054483406 LPWMEVWI 8 Unmodified _LPWMEVWI_ 0 0 0 REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7504272460938 2 537.278063 1072.54157 0.85961 0.00046185 -2.1911 -0.0011772 -1.3315 -0.00071537 537.7791233909498 57.323 0.22406 51.296 51.166 51.39 -6.0275 17 11 2 0 0 0 8.7369 1 36606 36606 11.114 0 1 14709000 + 36716 22571 24374 24856 43284 43284 0.008204900648706825 LPWMNNIEL 9 Oxidation (M) _LPWM(Oxidation (M))NNIEL_ LPWM(1)NNIEL LPWM(54)NNIEL 0 0 1 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.28515625 2 573.286617 1144.55868 1.1286 0.00064701 -0.38503 -0.00022073 0.74358 0.00042628 573.2853790302021 79.955 0.42313 79.465 79.164 79.587 -0.48932 38 17 4 0 0 0 0.03327 1 43757 43757 53.576 31.829 1 4203500 36717 1160 24375 24857 43285 43285 193 -0.007816341199941235 LPWMNNIEL 9 Oxidation (M) _LPWM(Oxidation (M))NNIEL_ LPWM(1)NNIEL LPWM(48)NNIEL 0 0 1 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.286865234375 2 573.286617 1144.55868 1.0078 0.00057778 -0.59272 -0.0003398 0.41511 0.00023798 573.286462582736 80.748 0.36333 80.256 80.08 80.443 -0.49247 38 15 3 0 0 0 0.042911 1 44199 44199 48.346 19.859 1 2807900 36718 1160 24375 24857 43286 43286 193 -0.007816341199941235 LPWMNNIEL 9 Oxidation (M) _LPWM(Oxidation (M))NNIEL_ LPWM(1)NNIEL LPWM(67)NNIEL 0 0 1 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2867431640625 2 573.286617 1144.55868 1.1905 0.00068248 -0.5844 -0.00033503 0.60606 0.00034745 573.2861916906379 87.057 0.42862 80.882 80.588 81.017 -6.1757 50 23 3 0 0 0 0.016184 2 57423 57300;57423 67.344 30.165 1 21956000 36719 1160 24375 24857 43287;43288 43288 193 -0.007816341199941235 LPWMNNIEL 9 Unmodified _LPWMNNIEL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2911376953125 2 565.289159 1128.56377 2.1958 0.0012413 2.2385 0.0012654 4.4343 0.0025067 565.2901964864482 93.835 0.29757 93.858 93.689 93.987 0.022987 19 11 2 0 0 0 0.078417 1 52156 52156 38.151 17.737 1 2643400 36720 1160 24375 24858 43289 43289 0.004626697426374449 LPWMNNIEL 9 Unmodified _LPWMNNIEL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2896118164062 2 565.289159 1128.56377 0.78301 0.00044263 0.64523 0.00036474 1.4282 0.00080736 565.2893368634805 99.922 0.19118 93.746 93.664 93.855 -6.1757 33 13 3 0 0 0 0.010877 1 66662 66662 77.984 35.89 1 109140000 36721 1160 24375 24858 43290 43290 0.004626697426374449 LPWNITVHF 9 Unmodified _LPWNITVHF_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8062744140625 2 563.805834 1125.59712 NaN NaN NaN NaN NaN NaN NaN 85.361 1 85.423 84.923 85.923 0.061638 0 0 0 0.037345 1 47254 47254 78.728 52.46 1 36722 795 24376 24859 43291 43291 0.03934039576847681 LPWPCSPPYLL 11 Unmodified _LPWPCSPPYLL_ 0 0 0 ENST00000469750.5_1_7:2577705-2579570:-|nuORF;ENST00000493232.5_1_7:2579333-2579570:-|nuORF;ENST00000467558.5_1_7:2578584-2579570:-|nuORF ENST00000469750.5_1_7:2577705-2579570:-|nuORF ENST00000469750.5_1_7:2577705-2579570:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 643.3345947265625 2 643.33611 1284.65767 NaN NaN NaN NaN NaN NaN NaN 98.473 1 92.298 91.798 92.798 -6.1757 0 0 0 0.74212 1 65322 65322 14.838 2.3067 1 36723 13845 24377 24860 43292 43292 0.026723888449396327 LPWPPPASVLL 11 Unmodified _LPWPPPASVLL_ 0 0 0 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.23828125 3 397.237504 1188.69068 1.2799 0.00050843 0.41652 0.00016546 1.6964 0.00067388 397.5721342492189 89.099 0.56399 82.924 82.512 83.076 -6.1757 61 31 3 0 0 0 0.59643 1 58706 58706 11.518 1.9739 1 18150000 36724 6773 24378 24861 43293 43293 0.10388338959273824 LPWPVSTKNP 10 Unmodified _LPWPVSTKNP_ 0 0 0 nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104237536-104277386:-|nuORF nc|ENSG00000214198|Q6P2S7|TTC41P nc|ENSG00000214198|Q6P2S7|TTC41P MSMS AL20221201_MKP_PDAC_01 4 380.2142028808594 3 380.213358 1137.61824 NaN NaN NaN NaN NaN NaN NaN 109.71 1 103.53 103.03 104.03 -6.1757 0 0 0 0.99388 1 73251 73251 0.56317 0.16245 1 36725 16543 24379 24862 43294 43294 0.05494004885713366 LPWQHRQL 8 Unmodified _LPWQHRQL_ 0 0 0 REV__chr7:100949685-100960533|39|14.18|0.15|6.52|+|2|MUC3A,None|1 REV__chr7:100949685-100960533|39|14.18|0.15|6.52|+|2|MUC3A,None|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2933349609375 2 539.30125 1076.58795 0.18544 0.00010001 -1.186 -0.00063961 -1.0006 -0.0005396 539.3003523441539 41.043 0.46741 41.042 40.851 41.319 -0.0017929 53 22 5 0 0 0 0.72953 1 22023 22023 14.582 2.9414 1 29859000 + 36726 16816 24380 24863 43295 43295 0.052716910111939796 LPWSAGSDL 9 Unmodified _LPWSAGSDL_ 0 0 0 REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2 REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2378845214844 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 65.758 1 65.758 65.258 66.258 0 0 0 0 0.7243 1 36675 36675 8.5933 0.68312 1 + 36727 29668 24381 24864 43296 43296 -0.014104943735219422 LPWSAGSDL 9 Unmodified _LPWSAGSDL_ 0 0 0 REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2 REV__nc|ENSG00000142025|Q8IXT2-2|DMRTC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2362976074219 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 66.258 1 65.775 65.275 66.275 -0.48323 0 0 0 0.57317 1 36177 36177 13.508 3.3245 1 + 36728 29668 24381 24864 43297 43297 -0.014104943735219422 LPWSLYNTF 9 Unmodified _LPWSLYNTF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7896118164062 2 570.78985 1139.56515 1.3927 0.00079495 -0.19851 -0.00011331 1.1942 0.00068164 570.7894210572546 100.18 0.15974 94.008 93.912 94.072 -6.1757 16 9 3 0 0 0 0.016184 1 66935 66935 67.344 43.323 1 23422000 36729 1381 24382 24865 43298 43298 0.0009462710302159394 LPWTAEQVVSM 11 Unmodified _LPWTAEQVVSM_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;ENST00000528593.1_1_11:46804822-46806223:-|nuORF nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MSMS AL20221201_MKP_PDAC_01 4 630.8193359375 2 630.818281 1259.62201 NaN NaN NaN NaN NaN NaN NaN 87.257 1 81.082 80.582 81.582 -6.1757 0 0 0 0.52067 1 57534 57534 23.79 4.5328 1 36730 8497 24383 24866 43299 43299 0.002583065972658005 LPWTEPECDF 10 Unmodified _LPWTEPECDF_ 0 0 0 nc|ENSG00000082146|Q9C0K7-3|STRADB;ENSG00000082146|ENST00000194530|STRADB nc|ENSG00000082146|Q9C0K7-3|STRADB nc|ENSG00000082146|Q9C0K7-3|STRADB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.76513671875 2 618.765714 1235.51688 0.59097 0.00036567 -2.0907 -0.0012936 -1.4997 -0.00092796 618.7637376088172 71.633 0.36866 71.157 70.95 71.319 -0.47609 39 14 3 0 0 0 0.5905 1 39173 39173 11.64 1.5664 1 2554300 36731 1339 24384 24867 43300 43300 -0.09146234599165837 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.80712890625 2 552.808042 1103.60153 0.19942 0.00011024 -0.96905 -0.0005357 -0.76963 -0.00042546 552.8074310800055 66.027 0.26446 65.544 65.386 65.651 -0.48324 30 11 3 0 0 0 0.017075 1 36012 36012 66.457 36.232 1 8593400 36732 4885 24385 24868 43301 43301 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8058471679688 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 66.154 1 65.671 65.171 66.171 -0.48323 0 0 0 0.20976 1 36116 36116 29.841 13.993 1 36733 4885 24385 24868 43302 43302 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8074951171875 2 552.808042 1103.60153 0.82306 0.00045499 -0.29232 -0.0001616 0.53074 0.0002934 552.8078005175024 65.499 0.37457 65.499 65.324 65.699 1.5259E-05 57 17 4 0 0 0 0.010301 2 35871 35871;35968 79.596 37.502 1 60094000 36734 4885 24385 24868 43303;43304 43303 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8059692382812 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 76.511 1 70.336 69.836 70.836 -6.1757 0 0 0 0.098496 1 50050 50050 43.772 15.286 1 36735 4885 24385 24868 43305 43305 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8085327148438 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 76.758 1 70.582 70.082 71.082 -6.1757 0 0 0 0.014715 1 50207 50207 85.642 41.234 1 36736 4885 24385 24868 43306 43306 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8091430664062 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 76.972 1 70.796 70.296 71.296 -6.1757 0 0 0 0.030047 1 50340 50340 66.457 30.412 1 36737 4885 24385 24868 43307 43307 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8086547851562 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 77.163 1 70.987 70.487 71.487 -6.1757 0 0 0 0.15231 1 50465 50465 36.506 6.2814 1 36738 4885 24385 24868 43308 43308 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8090209960938 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 77.668 1 71.492 70.992 71.992 -6.1757 0 0 0 0.068038 1 50809 50809 51.63 9.5352 1 36739 4885 24385 24868 43309 43309 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8086547851562 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 77.854 1 71.678 71.178 72.178 -6.1757 0 0 0 0.10661 1 50938 50938 41.956 18.807 1 36740 4885 24385 24868 43310 43310 0.05387503999759247 LPWVGKELY 9 Unmodified _LPWVGKELY_ 0 0 0 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 ENSG00000136937|ENST00000375147|NCBP1 MSMS AL20221201_MKP_PDAC_01 4 552.8082275390625 2 552.808042 1103.60153 NaN NaN NaN NaN NaN NaN NaN 78.036 1 71.86 71.36 72.36 -6.1757 0 0 0 0.018164 1 51063 51063 118.89 70.549 1 36741 4885 24385 24868 43311 43311 0.05387503999759247 LPWVHLAY 8 Unmodified _LPWVHLAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7751159667969 2 499.776545 997.538538 0.18394 9.1927E-05 -0.56112 -0.00028044 -0.37719 -0.00018851 499.77620355562937 73.028 0.30392 73.069 72.901 73.205 0.041725 40 14 3 0 0 0 0.18189 2 40178 40178;40282 77.196 52.522 1 25165000 36742 8367 24386 24869 43312;43313 43312 0.03966983002374036 LPWVHLAY 8 Unmodified _LPWVHLAY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.778076171875 2 499.776545 997.538538 1.0309 0.00051524 0.07993 3.9947E-05 1.1109 0.00055519 499.7765164028315 91.43 0.67107 85.255 84.925 85.596 -6.1757 95 37 3 0 0 0 0.079329 3 60306 60306;60433;60559 108.76 66.941 1 79337000 36743 8367 24386 24869 43314;43315;43316 43314 0.03966983002374036 LPWWLHLQHVC 11 Unmodified _LPWWLHLQHVC_ 0 0 0 ENST00000454442.5_1_12:53565050-53565697:-|nuORF;ENST00000475890.5_1_12:53554625-53565697:-|nuORF ENST00000454442.5_1_12:53565050-53565697:-|nuORF ENST00000454442.5_1_12:53565050-53565697:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 716.3724365234375 2 716.371349 1430.72815 0.96143 0.00068874 1.1166 0.0007999 2.078 0.0014886 716.3720932151687 66.701 0.30641 66.71 66.561 66.868 0.0095596 45 14 4 0 0 0 0.46578 1 36677 36677 18.146 5.9057 1 36371000 36744 13570 24387 24870 43317 43317 0.030011069532292822 LPWYNAYRF 9 Unmodified _LPWYNAYRF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1;ENST00000472894.1_1_9:95018893-95021273:-|nuORF ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.310302734375 2 615.308741 1228.60293 0.89411 0.00055015 0.39198 0.00024119 1.2861 0.00079134 615.3091649186201 71.702 0.35418 71.741 71.62 71.974 0.039024 31 16 3 0 0 0 0.062454 1 39488 39488 54.774 37.661 1 2739600 36745 9795 24388 24871 43318 43318 -0.0022286191149305523 LPYADYWYDI 10 Unmodified _LPYADYWYDI_ 0 0 0 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 ENSG00000142235|ENST00000600059|LMTK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.8031005859375 2 659.803154 1317.59175 0.63468 0.00041877 -0.97755 -0.00064499 -0.34287 -0.00022623 659.8030124926748 48.326 0.33978 43.092 42.907 43.247 -5.2339 37 20 2 0 0 0 0.1028 1 30085 30085 46.021 7.8454 1 21539000 36746 5405 24389 24872 43319 43319 -0.05433728796288051 LPYAEGFAY 9 Unmodified _LPYAEGFAY_ 0 0 0 ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5 ENSG00000244405|ENST00000306376|ETV5 ENSG00000244405|ENST00000306376|ETV5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7496337890625 2 515.74765 1029.48075 0.8312 0.00042869 0.78335 0.00040401 1.6145 0.0008327 515.748748465569 72.715 0.3653 66.539 66.351 66.716 -6.1757 29 18 2 0 0 0 0.045537 2 47533 47533;47652 46.921 19.733 1 16112000 36747 10729 24390 24873 43320;43321 43320 -0.03281323713713391 LPYAGDVSM 9 Oxidation (M) _LPYAGDVSM(Oxidation (M))_ LPYAGDVSM(1) LPYAGDVSM(54) 0 0 1 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7221069335938 2 484.723318 967.432083 0.49006 0.00023754 -1.8006 -0.00087281 -1.3106 -0.00063526 484.7224085266157 38.391 0.25966 38.391 38.297 38.556 0 33 21 2 0 0 0 0.03327 1 20486 20486 53.576 25.089 1 5506500 36748 9984 24391 24874 43322 43322 1613 -0.052935603451032875 LPYALLQEVY 10 Unmodified _LPYALLQEVY_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8324584960938 2 604.831714 1207.64888 0.42383 0.00025634 -0.55472 -0.00033551 -0.13089 -7.9168E-05 604.8315024243122 89.608 0.31995 89.106 88.937 89.257 -0.50171 23 13 3 0 0 0 0.64183 1 48977 48977 14.838 12.34 1 484380 36749 763;12747 24392 24875 43323 43323 0.05335738480107466 LPYCEMCE 8 Unmodified _LPYCEMCE_ 0 0 0 nc|ENSG00000121988|Q5FWF4-2|ZRANB3;ENST00000403017.2_1_2:135957914-136028945:-|nuORF;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3 nc|ENSG00000121988|Q5FWF4-2|ZRANB3 nc|ENSG00000121988|Q5FWF4-2|ZRANB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.1854553222656 2 494.184657 986.354761 NaN NaN NaN NaN NaN NaN NaN 59.045 1 59.045 58.545 59.545 0 0 0 0 0.97444 1 32891 32891 2.8892 0 1 36750 3614 24393 24876 43324 43324 -0.13896237877315798 LPYCPGKTL 9 Carbamidomethyl (C) _LPYC(Carbamidomethyl (C))PGKTL_ LPYC(1)PGKTL LPYC(63)PGKTL 0 1 0 ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF;nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000526390.5_1_12:104683270-104742190:+|nuORF;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF ENSG00000197763|ENST00000524230|TXNRD3;nc|ENSG00000198431|Q16881-7|TXNRD1 nc|ENSG00000198431|Q16881-7|TXNRD1 MSMS AL20221201_MKP_PDAC_01 4 524.7789916992188 2 524.778428 1047.5423 NaN NaN NaN NaN NaN NaN NaN 46.408 1 41.328 40.828 41.828 -5.0805 0 0 0 0.038824 1 28657 28657 62.573 28.47 1 36751 10000;10091 24394 24877 43325 43325 909 0.020432847139318255 LPYDPHDVPT 10 Unmodified _LPYDPHDVPT_ 0 0 0 REV__ENST00000576964.5_1_17:953371-986816:-|nuORF REV__ENST00000576964.5_1_17:953371-986816:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.18896484375 3 385.188989 1152.54514 0.88851 0.00034225 -1.5404 -0.00059336 -0.65192 -0.00025111 385.188108070069 17.623 0.22064 15.037 14.978 15.198 -2.5866 39 32 2 0 0 0 0.67459 1 9221 9221 3.0723 0 1 5548100 + 36752 21502 24395 24878 43326 43326 -0.02503168627595187 LPYDRNISNY 10 Unmodified _LPYDRNISNY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000461036.1_1_3:47048639-47048841:+|nuORF;ENST00000476095.5_1_3:47048649-47049645:+|nuORF;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.8106079101562 2 627.809302 1253.60405 0.16972 0.00010655 0.78797 0.0004947 0.95769 0.00060125 628.3103237576761 39.932 0.17788 39.932 39.832 40.01 0 13 8 2 0 0 0 0.10406 1 21460 21460 45.74 26.483 1 2768700 36753 6755;5608 24396 24879 43327 43327 -0.012606923332214137 LPYDRNISNY 10 Unmodified _LPYDRNISNY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000461036.1_1_3:47048639-47048841:+|nuORF;ENST00000476095.5_1_3:47048649-47049645:+|nuORF;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.80908203125 2 627.809302 1253.60405 0.58492 0.00036722 -1.4345 -0.00090062 -0.84962 -0.0005334 627.8081415851835 45.651 0.24972 40.696 40.582 40.832 -4.9549 20 16 2 0 0 0 2.8143E-07 1 28104 28104 139.38 84.605 1 11145000 36754 6755;5608 24396 24879 43328 43328 -0.012606923332214137 LPYDRNISNY 10 Unmodified _LPYDRNISNY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;ENST00000461036.1_1_3:47048639-47048841:+|nuORF;ENST00000476095.5_1_3:47048649-47049645:+|nuORF;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.809302 1253.60405 0.30395 0.00019083 0.26698 0.00016761 0.57093 0.00035844 627.8097971486892 40.374 0.17016 40.076 39.963 40.133 -0.29716 0.072245 -0.00021547 NaN 45.74 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 883280 36755 6755;5608 24396 24879 -0.012606923332214137 LPYDVTPEQAL 11 Unmodified _LPYDVTPEQAL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.32177734375 2 623.321711 1244.62887 0.22224 0.00013852 1.373 0.00085583 1.5953 0.00099435 623.3227227157289 64.705 0.28083 64.705 64.573 64.853 0 21 13 2 0 0 0 0.62014 2 36038 36038;36149 18.146 11.423 1 1558900 36756 5256;9204 24397 24880 43329;43330 43329 0.016339427494813208 LPYEAGQRF 9 Unmodified _LPYEAGQRF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7777099609375 2 540.777274 1079.53999 0.15222 8.2315E-05 1.7977 0.00097215 1.9499 0.0010545 540.7773266909378 40.1 0.17741 40.1 39.993 40.17 0 22 8 3 0 0 0 0.044011 1 21562 21562 47.749 17.112 1 12455000 36757 1675 24398 24881 43331 43331 0.003405723004561878 LPYEAGQRF 9 Unmodified _LPYEAGQRF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7774658203125 2 540.777274 1079.53999 0.45573 0.00024645 2.1327 0.0011533 2.5884 0.0013998 540.7781209004933 40.553 0.17016 40.25 40.148 40.318 -0.30304 21 7 4 0 0 0 0.032796 2 21428 21418;21428 53.833 25.346 1 7852600 36758 1675 24398 24881 43332;43333 43333 0.003405723004561878 LPYEAGQRF 9 Unmodified _LPYEAGQRF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2839965820312 2 540.777274 1079.53999 0.36952 0.00019983 1.1085 0.00059943 1.478 0.00079926 540.7768316145479 45.439 0.83603 40.484 40.299 41.135 -4.9549 70 56 2 0 0 0 0.08691 1 28005 28005 36.127 5.4905 1 56236000 36759 1675 24398 24881 43334 43334 0.003405723004561878 LPYEAQVF 8 Unmodified _LPYEAQVF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7500305175781 2 483.750193 965.485833 0.23366 0.00011303 0.017083 8.264E-06 0.25074 0.0001213 483.7501467337781 64.429 0.35204 64.429 64.235 64.587 0 35 16 3 0 0 0 0.31612 2 35978 35872;35978 53.576 30.427 1 6305300 36760 1199 24399 24882 43335;43336 43336 0.0017098014890279956 LPYEAQVF 8 Unmodified _LPYEAQVF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4940795898438 1 966.49311 965.485833 0.12158 0.0001175 0.16225 0.00015682 0.28383 0.00027432 966.4932665524335 64.464 0.2843 64.464 64.255 64.539 0 21 12 2 0 0 0 0.64853 2 35977 35878;35977 21.747 9.2151 1 1215500 36761 1199 24399 24882 43337;43338 43338 0.0017098014890279956 LPYEAQVF 8 Unmodified _LPYEAQVF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7510375976562 2 483.750193 965.485833 0.4948 0.00023936 0.6273 0.00030345 1.1221 0.00054281 483.75035492392766 65.002 0.38844 64.518 64.295 64.684 -0.48428 31 17 2 0 0 0 0.5284 2 35421 35421;35526 32.117 19.585 1 3067100 36762 1199 24399 24882 43339;43340 43339 0.0017098014890279956 LPYEAQVF 8 Unmodified _LPYEAQVF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.750732421875 2 483.750193 965.485833 1.2205 0.0005904 -0.32351 -0.0001565 0.89696 0.0004339 483.7500549389621 71.49 0.39553 65.315 65.066 65.462 -6.1757 33 19 2 0 0 0 0.24071 1 46671 46671 63.563 33.338 1 37222000 36763 1199 24399 24882 43341 43341 0.0017098014890279956 LPYEDVAIPL 10 Unmodified _LPYEDVAIPL_ 0 0 0 ENST00000503439.1_1_3:134201629-134201746:-|nuORF;ENSG00000129055|ENST00000354910|ANAPC13 ENST00000503439.1_1_3:134201629-134201746:-|nuORF ENST00000503439.1_1_3:134201629-134201746:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.3108520507812 2 565.310615 1128.60668 0.6484 0.00036654 -0.06873 -3.8854E-05 0.57967 0.00032769 565.3104574424929 86.798 0.30161 86.295 86.141 86.443 -0.50318 24 11 3 0 0 0 0.62068 1 47474 47474 10.074 3.3508 1 825670 36764 4111 24400 24883 43342 43342 0.04751763071703863 LPYEKVSRL 9 Unmodified _LPYEKVSRL_ 0 0 0 ENSG00000140835|ENST00000539698|CHST4;chr16:71526312-71536660|159|19.36|0.39|5.63|+|ENST00000338482|CHST4,CHST4 ENSG00000140835|ENST00000539698|CHST4 ENSG00000140835|ENST00000539698|CHST4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8856201171875 3 368.885241 1103.63389 NaN NaN NaN NaN NaN NaN NaN 35.454 1 35.231 34.731 35.731 -0.2224 0 0 0 0.43047 1 18566 18566 13.519 5.0744 1 36765 93 24401 24884 43343 43343 0.08622291402775772 LPYEKVSRL 9 Unmodified _LPYEKVSRL_ 0 0 0 ENSG00000140835|ENST00000539698|CHST4;chr16:71526312-71536660|159|19.36|0.39|5.63|+|ENST00000338482|CHST4,CHST4 ENSG00000140835|ENST00000539698|CHST4 ENSG00000140835|ENST00000539698|CHST4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8860778808594 3 368.885241 1103.63389 1.1446 0.00042222 0.096881 3.5738E-05 1.2415 0.00045796 368.8853795451944 39.72 0.36134 35.269 35.058 35.42 -4.4509 42 22 2 0 0 0 0.27545 1 23577 23577 17.863 9.7076 1 18662000 36766 93 24401 24884 43344 43344 0.08622291402775772 LPYESQVY 8 Unmodified _LPYESQVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.4816284179688 1 998.482939 997.475663 -0.077178 -7.7061E-05 -0.29805 -0.0002976 -0.37523 -0.00037466 998.4823790075425 46.848 0.2036 46.848 46.718 46.922 0 17 9 2 0 0 0 0.21583 1 25576 25576 67.344 22.937 1 4629700 36767 4868 24402 24885 43345 43345 -0.02317627576326231 LPYESQVY 8 Unmodified _LPYESQVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7454528808594 2 499.745108 997.475663 0.31775 0.00015879 -0.21839 -0.00010914 0.099362 4.9656E-05 499.7450129002565 46.841 0.38778 46.841 46.656 47.044 0 41 18 3 0 0 0 0.31612 2 25579 25579;25689 53.576 25.089 1 25465000 36768 4868 24402 24885 43346;43347 43346 -0.02317627576326231 LPYESQVY 8 Unmodified _LPYESQVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7453308105469 2 499.745108 997.475663 1.2796 0.00063949 -0.71406 -0.00035685 0.56558 0.00028264 499.7451316541942 54.365 0.44744 48.499 48.266 48.713 -5.8653 49 27 3 0 0 0 0.31612 1 34408 34408 53.576 21.27 1 38061000 36769 4868 24402 24885 43348 43348 -0.02317627576326231 LPYESQVY 8 Unmodified _LPYESQVY_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.4843139648438 1 998.482939 997.475663 1.0326 0.001031 0.015589 1.5565E-05 1.0482 0.0010466 998.4828037039921 54.359 0.24088 48.494 48.401 48.641 -5.8653 19 14 2 0 0 0 0.05898 1 34454 34454 129.2 61.857 1 7521800 36770 4868 24402 24885 43349 43349 -0.02317627576326231 LPYFDRLDY 9 Unmodified _LPYFDRLDY_ 0 0 0 nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000478866.5_1_1:161172175-161179984:+|nuORF nc|ENSG00000158864|O75306-2|NDUFS2 nc|ENSG00000158864|O75306-2|NDUFS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2974243164062 2 601.298039 1200.58152 NaN NaN NaN NaN NaN NaN NaN 66.651 1 66.168 65.668 66.668 -0.48323 0 0 0 0.27852 1 36401 36401 26.268 2.2476 1 36771 6615 24403 24886 43350 43350 -0.010742917308562028 LPYFEYFKY 9 Unmodified _LPYFEYFKY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MSMS AL20221201_MKP_PDAC_01 4 635.3147583007812 2 635.313158 1268.61176 NaN NaN NaN NaN NaN NaN NaN 93.513 1 87.337 86.837 87.837 -6.1757 0 0 0 0.035688 1 61897 61897 63.961 45.814 1 36772 7082 24404 24887 43351 43351 -0.011799330656685925 LPYFLIKYDEN 11 Unmodified _LPYFLIKYDEN_ 0 0 0 nc|ENSG00000197548|O95352-2|ATG7;ENSG00000197548|ENST00000693202|ATG7;nc|ENSG00000197548|O95352-3|ATG7 nc|ENSG00000197548|O95352-2|ATG7 nc|ENSG00000197548|O95352-2|ATG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.8643798828125 2 707.866285 1413.71802 NaN NaN NaN NaN NaN NaN NaN 83.978 1 83.978 83.478 84.478 0 0 0 0 0.9406 1 46565 46565 2.086 0 1 36773 9966 24405 24888 43352 43352 0.02770777709019967 LPYFSEMVGY 10 Unmodified _LPYFSEMVGY_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000496353.1_1_1:1254237-1254918:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.281005859375 2 603.281 1204.54745 0.44422 0.00026799 -1.1148 -0.00067255 -0.6706 -0.00040456 603.2802040292991 95.018 0.55917 88.843 88.481 89.04 -6.1757 43 31 2 0 0 0 0.1899 2 62945 62820;62945 50.855 36.017 1 8571100 36774 3985 24406 24889 43353;43354 43354 -0.04664456214118218 LPYGFIQEL 9 Unmodified _LPYGFIQEL_ 0 0 0 nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B nc|ENSG00000130939|O95155-3|UBE4B nc|ENSG00000130939|O95155-3|UBE4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2913208007812 2 540.292225 1078.5699 0.29408 0.00015889 0.0001569 8.477E-08 0.29424 0.00015898 540.2922647300591 89.342 0.3587 88.84 88.642 89.001 -0.50171 38 15 3 0 0 0 0.25297 2 48815 48815;48908 19.439 8.6151 1 1962800 36775 4277 24407 24890 43355;43356 43355 0.033755112457811265 LPYGGFSF 8 Unmodified _LPYGGFSF_ 0 0 0 REV__ENSG00000163286|ENST00000295453|ALPG REV__ENSG00000163286|ENST00000295453|ALPG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2157592773438 2 444.218529 886.422505 NaN NaN NaN NaN NaN NaN NaN 23.871 1 23.892 23.392 24.392 0.021185 0 0 0 0.97444 1 12302 12302 2.8892 0.31174 1 + 36776 21741 24408 24891 43357 43357 -0.02524960568325696 LPYGPEVDIW 10 Unmodified _LPYGPEVDIW_ 0 0 0 nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4;ENST00000600350.1_1_19:39667133-39669216:+|nuORF nc|ENSG00000130669|O96013-2|PAK4 nc|ENSG00000130669|O96013-2|PAK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.800537109375 2 594.800414 1187.58628 0.9147 0.00054407 -0.096832 -5.7596E-05 0.81787 0.00048647 595.3015014482908 97.8 0.13859 91.624 91.577 91.716 -6.1757 14 9 2 0 0 0 0.14917 1 64866 64866 39.957 11.47 1 21228000 36777 4233 24409 24892 43358 43358 -1.4075880926611717E-05 LPYGREDVL 9 Unmodified _LPYGREDVL_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2847290039062 2 531.284931 1060.55531 0.48112 0.00025561 0.05734 3.0464E-05 0.53846 0.00028608 531.2849838896855 45.806 0.47898 45.806 45.46 45.939 0 54 24 3 0 0 0 0.2324 1 25012 25012 20.415 1.1575 1 37508000 36778 6957 24410 24893 43359 43359 0.02745439097657254 LPYGREDVL 9 Unmodified _LPYGREDVL_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 531.284931 1060.55531 0.3825 0.00020322 1.2881 0.00068436 1.6706 0.00088758 531.2857471765991 51.867 0.28502 46.133 46.004 46.289 -5.7345 0.1634 0.001029 NaN 20.415 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 68224000 36779 6957 24410 24893 0.02745439097657254 LPYGRPRVL 9 Unmodified _LPYGRPRVL_ 0 0 0 ENSG00000197594|ENST00000647893|ENPP1 ENSG00000197594|ENST00000647893|ENPP1 ENSG00000197594|ENST00000647893|ENPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5534057617188 3 357.553826 1069.63965 -0.21035 -7.5212E-05 -0.21732 -7.7703E-05 -0.42767 -0.00015292 357.5537392472728 35.81 0.18445 35.835 35.723 35.907 0.024967 14 8 2 0 0 0 0.15471 1 18945 18945 27.629 14.756 1 3729400 36780 9977 24411 24894 43360 43360 0.10761434705068496 LPYHFLSE 8 Unmodified _LPYHFLSE_ 0 0 0 REV__ENSG00000189186|ENST00000451261|DCAF8L2 REV__ENSG00000189186|ENST00000451261|DCAF8L2 MSMS AL20221201_MKP_PDAC_01 4 503.2540893554688 2 503.255643 1004.49673 NaN NaN NaN NaN NaN NaN NaN 25.905 1 22.954 22.454 23.454 -2.9511 0 0 0 0.59893 1 14218 14218 34.187 7.8461 1 + 36781 23770 24412 24895 43361 43361 -0.005336174768103774 LPYHGESISM 10 Oxidation (M) _LPYHGESISM(Oxidation (M))_ LPYHGESISM(1) LPYHGESISM(130) 0 0 1 ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000478966.1_1_2:224840586-224849719:-|nuORF ENSG00000135919|ENST00000409304|SERPINE2 ENSG00000135919|ENST00000409304|SERPINE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2659301757812 2 575.265881 1148.51721 0.90879 0.0005228 -0.010182 -5.8575E-06 0.89861 0.00051694 575.2653817577151 34.614 0.53171 30.519 30.366 30.898 -4.0951 57 31 3 0 0 0 6.3408E-07 2 19927 19927;20055 133.7 21.109 1 22518000 36782 4758 24413 24896 43362;43363 43362 862 -0.051108148792991415 LPYHGESISM 10 Unmodified _LPYHGESISM_ 0 0 0 ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000478966.1_1_2:224840586-224849719:-|nuORF ENSG00000135919|ENST00000409304|SERPINE2 ENSG00000135919|ENST00000409304|SERPINE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2672729492188 2 567.268424 1132.5223 0.78384 0.00044465 0.72714 0.00041249 1.511 0.00085713 567.2686174443755 49.084 0.31252 43.688 43.54 43.853 -5.3961 30 21 2 0 0 0 0.043729 1 30613 30613 61.357 6.5839 1 46572000 36783 4758 24413 24897 43364 43364 -0.038665110166903105 LPYHLCRIPF 10 Unmodified _LPYHLCRIPF_ 0 0 0 ENSG00000138271|ENST00000260843|GPR87 ENSG00000138271|ENST00000260843|GPR87 ENSG00000138271|ENST00000260843|GPR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2640686035156 3 420.230355 1257.66923 -0.11524 -4.8426E-05 3.2505 0.001366 3.1353 0.0013175 420.23202788433053 35.486 0.20747 35.511 35.373 35.581 0.024967 12 9 2 0 0 0 0.23821 1 18732 18732 2.086 0 1 1397700 36784 5035 24414 24898 43365 43365 0.05070630658906339 LPYIKQEEF 9 Unmodified _LPYIKQEEF_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000458113.6_1_17:15983677-15983818:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1;ENST00000458113.6_1_17:15983677-15983818:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8087158203125 2 583.808239 1165.60193 0.055996 3.2691E-05 -0.0036623 -2.1381E-06 0.052334 3.0553E-05 583.808073023164 52.497 0.37045 52.497 52.287 52.657 0 41 16 4 0 0 0 0.025842 2 29003 29003;29108 57.722 21.595 1 9828000 36785 5298;13624 24415 24899 43366;43367 43366 0.02574878928930957 LPYIKQEEF 9 Unmodified _LPYIKQEEF_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000458113.6_1_17:15983677-15983818:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1;ENST00000458113.6_1_17:15983677-15983818:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8080444335938 2 583.808239 1165.60193 1.3405 0.00078258 1.0893 0.00063597 2.4298 0.0014185 583.8080784319329 59.014 0.70802 52.939 52.618 53.326 -6.0745 78 39 4 0 0 0 0.0087923 1 37809 37809 103.42 55.671 1 50734000 36786 5298;13624 24415 24899 43368 43368 0.02574878928930957 LPYKATENDIY 11 Unmodified _LPYKATENDIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.8311157226562 2 663.832443 1325.65033 -0.48966 -0.00032505 -0.80197 -0.00053238 -1.2916 -0.00085743 663.8316977236223 40.817 0.42328 40.817 40.601 41.024 0 144 40 4 0 0 0 0.029988 3 21876 21876;21983;22092 55.235 32.577 1 226120000 36787 7918 24416 24900 43369;43370;43371 43369 0.0005332777818694012 LPYKATENDIY 11 Unmodified _LPYKATENDIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.8336181640625 2 663.832443 1325.65033 0.091961 6.1047E-05 0.020486 1.3599E-05 0.11245 7.4646E-05 663.8324217474529 41.243 0.35517 40.94 40.757 41.112 -0.30304 57 16 5 0 0 0 0.0008837 2 21781 21781;21887 84.522 50.42 1 44040000 36788 7918 24416 24900 43372;43373 43372 0.0005332777818694012 LPYKATENDIY 11 Unmodified _LPYKATENDIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3341064453125 2 663.832443 1325.65033 0.59672 0.00039612 -0.29706 -0.0001972 0.29967 0.00019893 663.8321204941154 40.914 0.28062 40.912 40.773 41.053 -0.0017929 32 13 3 0 0 0 0.065225 1 21817 21817 47.594 17.754 1 4581000 36789 7918 24416 24900 43374 43374 0.0005332777818694012 LPYKATENDIY 11 Unmodified _LPYKATENDIY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.8330078125 2 663.832443 1325.65033 0.12797 8.4947E-05 0.012179 8.0845E-06 0.14014 9.3032E-05 663.8323634117753 46.769 0.53491 41.688 41.468 42.003 -5.0805 312 93 4 0 0 0 1.4401E-11 3 28803 28803;28932;29058 128.57 71.324 1 373190000 36790 7918 24416 24900 43375;43376;43377 43375 0.0005332777818694012 LPYKEFSSGI 10 Unmodified _LPYKEFSSGI_ 0 0 0 REV__nc|ENSG00000080618|Q96IY4-2|CPB2 REV__nc|ENSG00000080618|Q96IY4-2|CPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.87060546875 3 380.869368 1139.58628 1.327 0.00050541 1.5568 0.00059293 2.8838 0.0010983 380.87022952646396 39.098 0.33687 34.647 34.488 34.825 -4.4509 45 21 3 0 0 0 0.66569 1 23167 23167 3.5871 0 1 18565000 + 36791 17672 24417 24901 43378 43378 0.02206592411926067 LPYKITAEEM 10 Oxidation (M) _LPYKITAEEM(Oxidation (M))_ LPYKITAEEM(1) LPYKITAEEM(65) 0 0 1 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.8050537109375 2 605.804839 1209.59513 -0.087043 -5.2731E-05 0.42821 0.00025941 0.34117 0.00020668 605.8050274580988 38.082 0.22267 38.082 37.925 38.148 0 25 10 3 0 0 0 0.035244 1 20279 20279 65.474 40.8 1 2803100 36792 3087 24418 24902 43379 43379 537 -0.0012880201397820201 LPYKITAEEM 10 Oxidation (M) _LPYKITAEEM(Oxidation (M))_ LPYKITAEEM(1) LPYKITAEEM(61) 0 0 1 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MSMS AL20221201_MKP_PDAC_01 4 605.8048095703125 2 605.804839 1209.59513 NaN NaN NaN NaN NaN NaN NaN 43.635 1 38.871 38.371 39.371 -4.7648 0 0 0 0.035368 1 26528 26528 61.09 26.158 1 36793 3087 24418 24902 43380 43380 537 -0.0012880201397820201 LPYKITAEEMY 11 Oxidation (M) _LPYKITAEEM(Oxidation (M))Y_ LPYKITAEEM(1)Y LPYKITAEEM(76)Y 0 0 1 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.3373413085938 2 687.336504 1372.65845 0.67217 0.00046201 -0.53347 -0.00036667 0.1387 9.5332E-05 687.3363223462807 46.194 0.30706 46.194 46.044 46.351 0 53 14 5 0 0 0 0.004841 1 25217 25217 75.571 42.785 1 29793000 36794 3087 24419 24903 43381 43381 537 -0.01296861296714269 LPYKITAEEMY 11 Oxidation (M) _LPYKITAEEM(Oxidation (M))Y_ LPYKITAEEM(1)Y LPYKITAEEM(120)Y 0 0 1 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.3363037109375 2 687.336504 1372.65845 0.52601 0.00036155 -0.50593 -0.00034774 0.020079 1.3801E-05 687.3362287439326 46.541 0.29425 46.204 46.073 46.367 -0.33664 41 14 4 0 0 0 6.1613E-11 1 24887 24887 121.5 77.731 1 28848000 36795 3087 24419 24903 43382 43382 537 -0.01296861296714269 LPYKITAEEMY 11 Oxidation (M) _LPYKITAEEM(Oxidation (M))Y_ LPYKITAEEM(1)Y LPYKITAEEM(150)Y 0 0 1 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.8392333984375 2 687.336504 1372.65845 0.73897 0.00050792 -0.057377 -3.9437E-05 0.68159 0.00046848 687.3364367754059 52.386 0.38017 46.652 46.437 46.817 -5.7345 50 21 3 0 0 0 4.9562E-22 2 32981 32981;33101 154.75 103.12 1 60423000 36796 3087 24419 24903 43383;43384 43383 537 -0.01296861296714269 LPYKITAEEMY 11 Unmodified _LPYKITAEEMY_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.3404541015625 2 679.339046 1356.66354 -0.022222 -1.5096E-05 0.83356 0.00056627 0.81134 0.00055117 679.3398384414337 54.985 0.20416 54.985 54.897 55.101 0 13 8 2 0 0 0 0.61059 1 30540 30540 10.8 7.203 1 722110 36797 3087 24419 24904 43385 43385 -0.0005255743410543801 LPYKITAEEMY 11 Unmodified _LPYKITAEEMY_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 679.8416137695312 2 679.339046 1356.66354 0.22423 0.00015233 0.72965 0.00049568 0.95388 0.00064801 679.3396023766214 55.694 0.2289 55.216 55.091 55.32 -0.47798 27 10 3 0 0 0 0.178 1 30195 30195 33.445 16.332 1 3687600 36798 3087 24419 24904 43386 43386 -0.0005255743410543801 LPYKITAEEMY 11 Unmodified _LPYKITAEEMY_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.34033203125 2 679.339046 1356.66354 0.85991 0.00058417 0.080906 5.4963E-05 0.94082 0.00063914 679.3393147023876 61.925 0.76535 55.749 55.499 56.265 -6.1757 91 42 3 0 0 0 1.267E-08 4 39809 39809;39937;40079;40242 107.56 55.934 1 50257000 36799 3087 24419 24904 43387;43388;43389;43390 43387 -0.0005255743410543801 LPYKITAEEMY 11 Unmodified _LPYKITAEEMY_ 0 0 0 ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.3431396484375 2 679.339046 1356.66354 2.3265 0.0015805 0.065576 4.4548E-05 2.3921 0.001625 679.339342933279 62.713 0.60881 56.537 56.248 56.857 -6.1757 55 30 3 0 0 0 3.9134E-06 2 40462 40462;40602 97.741 53.969 1 15720000 36800 3087 24419 24904 43391;43392 43391 -0.0005255743410543801 LPYLDSFYEY 10 Unmodified _LPYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3036499023438 2 655.302987 1308.59142 0.47378 0.00031047 -0.27009 -0.00017699 0.20369 0.00013348 655.3028403830115 87.977 0.29085 87.472 87.334 87.624 -0.50423 18 13 2 0 0 0 0.70951 1 48087 48087 1.8442 0.19162 1 704650 36801 10661 24420 24905 43393 43393 -0.050531485161172895 LPYLDSFYEY 10 Unmodified _LPYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MSMS AL20221201_MKP_PDAC_01 4 655.3026123046875 2 655.302987 1308.59142 NaN NaN NaN NaN NaN NaN NaN 98.253 1 92.077 91.577 92.577 -6.1757 0 0 0 0.13561 1 65151 65151 48.346 33.097 1 36802 10661 24420 24905 43394 43394 -0.050531485161172895 LPYLGAICY 9 Carbamidomethyl (C) _LPYLGAIC(Carbamidomethyl (C))Y_ LPYLGAIC(1)Y LPYLGAIC(46)Y 0 1 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000466998.1_1_1:32042169-32043067:+|nuORF;ENST00000481165.5_1_1:32042638-32048843:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2735595703125 2 535.272978 1068.5314 0.99279 0.00053141 0.28602 0.0001531 1.2788 0.00068451 535.2732493297431 88.599 0.7354 82.423 82.043 82.779 -6.1757 105 40 3 0 0 0 0.047696 3 58264 58264;58393;58519 45.75 17.577 1 53452000 36803 5451 24421 24906 43395;43396;43397 43395 560 -0.00012117660389776574 LPYLGAICY 9 Carbamidomethyl (C) _LPYLGAIC(Carbamidomethyl (C))Y_ LPYLGAIC(1)Y LPYLGAIC(110)Y 0 1 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000466998.1_1_1:32042169-32043067:+|nuORF;ENST00000481165.5_1_1:32042638-32048843:+|nuORF nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1069.7705078125 1 1069.53868 1068.5314 0.86356 0.00092361 0.88649 0.00094814 1.7501 0.0018718 1069.5388297021566 88.56 0.4277 82.384 82.189 82.617 -6.1757 33 23 2 0 0 0 0.00077566 1 58499 58499 109.15 41.741 1 7736800 36804 5451 24421 24906 43398 43398 560 -0.00012117660389776574 LPYLQEYWDER 11 Unmodified _LPYLQEYWDER_ 0 0 0 REV__ENSG00000109452|ENST00000262992|INPP4B REV__ENSG00000109452|ENST00000262992|INPP4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 756.3997802734375 2 756.361899 1510.70924 NaN NaN NaN NaN NaN NaN NaN 92.944 1 92.487 91.987 92.987 -0.4574 0 0 0 0.94144 1 50797 50797 1.4819 0 1 + 36805 18657 24422 24907 43399 43399 -0.0256819592748343 LPYLSSSFF 9 Unmodified _LPYLSSSFF_ 0 0 0 REV__ENST00000236938.10_1_1:161683740-161683920:+|nuORF REV__ENST00000236938.10_1_1:161683740-161683920:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7700805664062 2 530.771126 1059.5277 0.43901 0.00023301 -2.5883 -0.0013738 -2.1493 -0.0011408 530.7700249749104 84.487 0.31467 83.987 83.864 84.179 -0.49961 24 14 2 0 0 0 0.2143 1 46229 46229 21.747 5.8995 1 1577700 + 36806 24830 24423 24908 43400 43400 0.00031535837410956447 LPYMEAFIL 9 Unmodified _LPYMEAFIL_ 0 0 0 nc|ENSG00000140465|P04798-3|CYP1A1;ENSG00000140465|ENST00000379727|CYP1A1 nc|ENSG00000140465|P04798-3|CYP1A1 nc|ENSG00000140465|P04798-3|CYP1A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.9129638671875 3 366.196428 1095.56745 -0.054831 -2.0079E-05 1.6036 0.00058724 1.5488 0.00056716 366.1970724058119 35.07 0.80872 35.097 34.668 35.477 0.027401 52 37 2 0 0 0 0.203 1 18563 18563 5.7319 0.43497 1 3585100 36807 5239 24424 24909 43401 43401 0.023493395165132824 LPYNDYFEY 9 Unmodified _LPYNDYFEY_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2670288085938 2 612.266404 1222.51826 0.041209 2.5231E-05 0.58667 0.0003592 0.62788 0.00038443 612.2666384199993 70.346 0.43636 70.346 70.153 70.589 0 60 18 5 0 0 0 0.095405 2 39222 39120;39222 34.102 21.06 1 9548000 36808 9847;3221 24425 24910 43402;43403 43403 -0.08410277238749586 LPYNDYFEY 9 Unmodified _LPYNDYFEY_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2640991210938 2 612.266404 1222.51826 0.51084 0.00031277 -0.97015 -0.00059399 -0.45931 -0.00028122 612.2659103205328 70.928 0.38785 70.45 70.248 70.636 -0.47735 56 17 4 0 0 0 0.12424 2 38754 38754;38864 30.637 19.594 1 21111000 36809 9847;3221 24425 24910 43404;43405 43404 -0.08410277238749586 LPYNDYFEY 9 Unmodified _LPYNDYFEY_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.26611328125 2 612.266404 1222.51826 0.89666 0.000549 -0.28405 -0.00017391 0.61261 0.00037508 612.2657394510068 70.335 0.35272 70.371 70.173 70.526 0.035507 28 16 3 0 0 0 0.32871 1 38729 38729 15.847 2.8047 1 3188700 36810 9847;3221 24425 24910 43406 43406 -0.08410277238749586 LPYNDYFEY 9 Unmodified _LPYNDYFEY_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.266845703125 2 612.266404 1222.51826 0.16948 0.00010376 0.087289 5.3444E-05 0.25676 0.00015721 612.2662726750076 78.586 0.55635 72.41 72.155 72.712 -6.1757 108 34 4 0 0 0 0.024882 3 51593 51339;51465;51593 58.679 40.532 1 164010000 36811 9847;3221 24425 24910 43407;43408;43409 43409 -0.08410277238749586 LPYNDYFEYF 10 Unmodified _LPYNDYFEYF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.7996826171875 2 685.800611 1369.58667 NaN NaN NaN NaN NaN NaN NaN 93.676 1 93.218 92.718 93.718 -0.4574 0 0 0 0.97302 1 51187 51187 3.5965 1.7523 1 36812 9847;3221 24426 24911 43410 43410 -0.0833403265889956 LPYNEKWEF 9 Unmodified _LPYNEKWEF_ 0 0 0 ENSG00000182578|ENST00000675795|CSF1R;ENST00000513609.1_1_5:149441181-149446609:-|nuORF ENSG00000182578|ENST00000675795|CSF1R ENSG00000182578|ENST00000675795|CSF1R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7730102539062 2 613.298039 1224.58152 0.43918 0.00026935 1.1856 0.00072711 1.6248 0.00099646 613.298677291728 99.761 0.23209 99.603 99.467 99.699 -0.1575 21 7 4 0 0 0 0.21798 1 54391 54391 2.3027 0.4585 1 3155100 36813 9068 24427 24912 43411 43411 -0.02178291730865567 LPYNHQHEY 9 Unmodified _LPYNHQHEY_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2 nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.85400390625 3 400.8526 1199.53597 0.96707 0.00038765 1.2808 0.0005134 2.2478 0.00090105 400.8530282325657 22.056 0.2415 19.321 19.19 19.431 -2.7348 18 13 2 0 0 0 0.32235 1 11868 11868 15.739 11.023 1 1437300 36814 4643 24428 24913 43412 43412 -0.0558151719324087 LPYNMPLAY 9 Oxidation (M) _LPYNM(Oxidation (M))PLAY_ LPYNM(1)PLAY LPYNM(64)PLAY 0 0 1 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7671508789062 2 549.270435 1096.52632 0.26218 0.00014401 -2.405 -0.001321 -2.1428 -0.001177 549.2688855734934 58.856 0.24456 58.365 58.29 58.535 -0.49079 19 11 3 0 0 0 0.019979 1 32013 32013 63.563 41.816 1 4549100 36815 5344 24429 24914 43413 43413 982 -0.01808421522991921 LPYNMPLAY 9 Unmodified _LPYNMPLAY_ 0 0 0 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.273193359375 2 541.272978 1080.5314 0.3394 0.00018371 -0.36319 -0.00019658 -0.023781 -1.2872E-05 541.2727310444832 75.817 0.27002 75.34 75.235 75.505 -0.47714 25 11 3 0 0 0 0.2143 1 41526 41526 21.747 7.8406 1 1351100 36816 5344 24429 24915 43414 43414 -0.005641176603603526 LPYNMPLAY 9 Unmodified _LPYNMPLAY_ 0 0 0 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2758178710938 2 541.272978 1080.5314 0.75761 0.00041008 2.5603 0.0013858 3.3179 0.0017959 541.2747884948917 83.093 0.44405 76.917 76.768 77.212 -6.1757 60 23 3 0 0 0 0.045537 1 54609 54609 46.921 25.174 1 33117000 36817 5344 24429 24915 43415 43415 -0.005641176603603526 LPYNMPLAY 9 Unmodified _LPYNMPLAY_ 0 0 0 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.272978 1080.5314 0.22302 0.00012071 0.31667 0.0001714 0.53968 0.00029212 541.272888379362 75.28 0.16413 75.326 75.266 75.431 0.045959 -0.0070806 0.00051604 NaN 21.747 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 759560 36818 5344 24429 24915 -0.005641176603603526 LPYNNKDRDAL 11 Unmodified _LPYNNKDRDAL_ 0 0 0 ENST00000410000.2_1_2:70142417-70143353:+|nuORF;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 ENST00000410000.2_1_2:70142417-70143353:+|nuORF ENST00000410000.2_1_2:70142417-70143353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2298889160156 3 440.229848 1317.66771 -0.49606 -0.00021838 0.61473 0.00027062 0.11867 5.2241E-05 440.23009155645656 27.642 0.2751 27.642 27.508 27.783 0 42 12 5 0 0 0 0.06459 1 14219 14219 45.603 26.459 1 23268000 36819 818 24430 24916 43416 43416 0.021586681038570532 LPYNNKDRDAL 11 Unmodified _LPYNNKDRDAL_ 0 0 0 ENST00000410000.2_1_2:70142417-70143353:+|nuORF;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 ENST00000410000.2_1_2:70142417-70143353:+|nuORF ENST00000410000.2_1_2:70142417-70143353:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8409423828125 2 659.841133 1317.66771 NaN NaN NaN NaN NaN NaN NaN 27.687 1 27.687 27.187 28.187 0 0 0 0 0.79773 1 14272 14272 12.175 3.4293 1 36820 818 24430 24916 43417 43417 0.021586681038570532 LPYNNKDRDAL 11 Unmodified _LPYNNKDRDAL_ 0 0 0 ENST00000410000.2_1_2:70142417-70143353:+|nuORF;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 ENST00000410000.2_1_2:70142417-70143353:+|nuORF ENST00000410000.2_1_2:70142417-70143353:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.5657348632812 3 440.229848 1317.66771 NaN NaN NaN NaN NaN NaN NaN 31 1 27.503 27.003 28.003 -3.497 0 0 0 0.021122 1 17528 17528 59.177 29.896 1 36821 818 24430 24916 43418 43418 0.021586681038570532 LPYNNKDRDAL 11 Unmodified _LPYNNKDRDAL_ 0 0 0 ENST00000410000.2_1_2:70142417-70143353:+|nuORF;nc|ENSG00000059728|Q05195-2|MXD1;ENSG00000059728|ENST00000264444|MXD1 ENST00000410000.2_1_2:70142417-70143353:+|nuORF ENST00000410000.2_1_2:70142417-70143353:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.5637817382812 3 440.229848 1317.66771 NaN NaN NaN NaN NaN NaN NaN 31.19 1 27.494 26.994 27.994 -3.6958 0 0 0 6.8728E-05 1 17645 17645 90.964 61.683 1 36822 818 24430 24916 43419 43419 0.021586681038570532 LPYNQPGTCY 10 Carbamidomethyl (C) _LPYNQPGTC(Carbamidomethyl (C))Y_ LPYNQPGTC(1)Y LPYNQPGTC(82)Y 0 1 0 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 ENSG00000181789|ENST00000314797|COPG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7713623046875 2 606.771331 1211.52811 0.30251 0.00018356 0.019957 1.2109E-05 0.32247 0.00019566 606.7712007918312 48.174 0.3581 42.94 42.711 43.069 -5.2339 41 21 3 0 0 0 0.013171 2 29924 29924;30066 81.89 62.633 1 18010000 36823 8996 24431 24917 43420;43421 43420 846 -0.0691941250504442 LPYNQQHLY 9 Unmodified _LPYNQQHLY_ 0 0 0 ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3 ENST00000414624.6_1_11:61645294-61658904:-|nuORF ENST00000414624.6_1_11:61645294-61658904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2952270507812 2 588.29583 1174.57711 -0.067604 -3.9771E-05 -0.096896 -5.7003E-05 -0.1645 -9.6775E-05 588.2953482495055 39.175 0.17388 38.888 38.787 38.961 -0.28687 15 7 3 0 0 0 0.026094 1 20661 20661 57.471 21.427 1 4467300 36824 10565 24432 24918 43422 43422 -0.0031975615377177746 LPYNQQHLY 9 Unmodified _LPYNQQHLY_ 0 0 0 ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3 ENST00000414624.6_1_11:61645294-61658904:-|nuORF ENST00000414624.6_1_11:61645294-61658904:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 588.2973022460938 2 588.29583 1174.57711 NaN NaN NaN NaN NaN NaN NaN 44.079 1 39.314 38.814 39.814 -4.7648 0 0 0 0.023279 1 26863 26863 74.423 40.32 1 36825 10565 24432 24918 43423 43423 -0.0031975615377177746 LPYNQQHLY 9 Unmodified _LPYNQQHLY_ 0 0 0 ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3 ENST00000414624.6_1_11:61645294-61658904:-|nuORF ENST00000414624.6_1_11:61645294-61658904:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.29583 1174.57711 0.48088 0.0002829 0.98858 0.00058158 1.4695 0.00086448 588.2963611553855 38.807 0.17672 38.807 38.703 38.88 0 -0.040404 0.00084754 NaN 57.471 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1580900 36826 10565 24432 24918 -0.0031975615377177746 LPYPDPAIAQF 11 Unmodified _LPYPDPAIAQF_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.32421875 2 616.321514 1230.62847 0.39352 0.00024254 1.0124 0.00062394 1.4059 0.00086648 616.3225964783976 80.115 0.21658 80.115 80.079 80.296 0 16 10 2 0 0 0 0.6889 1 44554 44554 5.2969 1.7004 1 584050 36827 8008 24433 24919 43424 43424 0.022385678202454073 LPYPDPAIAQF 11 Unmodified _LPYPDPAIAQF_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3220825195312 2 616.321514 1230.62847 0.99006 0.00061019 0.48077 0.00029631 1.4708 0.0009065 616.3216053373363 80.739 0.53645 80.246 79.906 80.443 -0.49247 68 22 5 0 0 0 0.014934 2 44233 44134;44233 62.573 45.46 1 6525300 36828 8008 24433 24919 43425;43426 43426 0.022385678202454073 LPYPDPAIAQF 11 Unmodified _LPYPDPAIAQF_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3218994140625 2 616.321514 1230.62847 1.1303 0.00069665 -0.070394 -4.3385E-05 1.0599 0.00065326 616.3211044241929 87.922 0.54852 81.746 81.495 82.043 -6.1757 72 30 3 0 0 0 0.0088414 3 58037 57871;57916;58037 69.105 50.959 1 44645000 36829 8008 24433 24919 43427;43428;43429 43429 0.022385678202454073 LPYPFTHHW 9 Unmodified _LPYPFTHHW_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8658752441406 3 399.866181 1196.57671 -0.60741 -0.00024288 0.47184 0.00018867 -0.13557 -5.421E-05 399.86640369662 55.928 0.37083 55.859 55.705 56.075 -0.068741 40 19 3 0 0 0 0.42049 1 30379 30379 11.495 5.7629 1 9022900 36830 6477 24434 24920 43430 43430 -0.013711310829648937 LPYPFTHHWQF 11 Unmodified _LPYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.9100646972656 3 491.575178 1471.70371 0.7495 0.00036843 -0.56846 -0.00027944 0.18104 8.8996E-05 491.90904923663567 70.136 0.26316 70.172 70.073 70.336 0.035507 29 12 3 0 0 0 0.44612 1 38632 38632 19.144 11.667 1 3483300 36831 6477 24435 24921 43431 43431 -0.01327829928641222 LPYPFTHHWQF 11 Unmodified _LPYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.5763244628906 3 491.575178 1471.70371 1.2427 0.00061087 0.16006 7.8682E-05 1.4027 0.00068955 491.5751701762037 94.358 0.38458 88.183 87.947 88.332 -6.1757 36 22 2 0 0 0 0.016495 1 62433 62433 60.899 55.497 1 11464000 36832 6477 24435 24921 43432 43432 -0.01327829928641222 LPYPSEASTTF 11 Unmodified _LPYPSEASTTF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7925415039062 2 606.792786 1211.57102 -0.052052 -3.1585E-05 -1.8634 -0.0011307 -1.9155 -0.0011623 606.7901610434152 58.629 0.60306 58.629 58.206 58.809 0 47 24 4 0 0 0 0.088077 2 32620 32596;32620 43.858 16.229 1 4008500 36833 7019 24436 24922 43433;43434 43434 -0.02630319175978002 LPYPSEASTTF 11 Unmodified _LPYPSEASTTF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7925415039062 2 606.792786 1211.57102 0.29805 0.00018085 -1.4868 -0.00090216 -1.1887 -0.00072131 606.7909334002361 59.308 0.65761 58.817 58.391 59.048 -0.49079 56 30 4 0 0 0 0.35243 1 32224 32224 24.021 2.2739 1 5941000 36834 7019 24436 24922 43435 43435 -0.02630319175978002 LPYPSEASTTF 11 Unmodified _LPYPSEASTTF_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.794677734375 2 606.792786 1211.57102 0.24596 0.00014925 2.808 0.0017039 3.054 0.0018531 606.7943740246986 66.846 0.59113 60.67 60.412 61.003 -6.1757 53 33 3 0 0 0 0.0097967 2 43459 43459;43607 68.081 11.904 1 36676000 36835 7019 24436 24922 43436;43437 43436 -0.02630319175978002 LPYPSSATL 9 Unmodified _LPYPSSATL_ 0 0 0 nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3 nc|ENSG00000110422|Q9H422-2|HIPK3 nc|ENSG00000110422|Q9H422-2|HIPK3 MSMS AL20221201_MKP_PDAC_01 4 474.7564086914062 2 474.755475 947.496398 NaN NaN NaN NaN NaN NaN NaN 63.729 1 57.553 57.053 58.053 -6.1757 0 0 0 0.0233 1 41227 41227 74.396 23.541 1 36836 2718 24437 24923 43438 43438 0.020549628033450063 LPYPTISWF 9 Unmodified _LPYPTISWF_ 0 0 0 nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG nc|ENSG00000072195|Q15772-1|SPEG nc|ENSG00000072195|Q15772-1|SPEG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7606811523438 2 562.294768 1122.57498 0.70881 0.00039856 -3.236 -0.0018196 -2.5272 -0.001421 562.2935057527012 75.821 0.26698 75.344 75.212 75.479 -0.47714 14 11 2 0 0 0 0.18941 1 41454 41454 14.582 1.0738 1 548380 36837 1075 24438 24924 43439 43439 0.018598151084233905 LPYQGEELSM 10 Oxidation (M) _LPYQGEELSM(Oxidation (M))_ LPYQGEELSM(1) LPYQGEELSM(46) 0 0 1 ENSG00000021355|ENST00000380739|SERPINB1;nc|ENSG00000021355|P30740-2|SERPINB1 ENSG00000021355|ENST00000380739|SERPINB1 ENSG00000021355|ENST00000380739|SERPINB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.771240234375 2 591.770997 1181.52744 -0.52352 -0.0003098 -0.53988 -0.00031949 -1.0634 -0.00062929 591.7714752991001 41.103 0.30016 41.103 40.961 41.261 0 31 15 3 0 0 0 0.10424 1 22136 22136 45.7 27.565 1 14251000 36838 523 24439 24925 43440 43440 72 -0.056062519447550585 LPYQGHNSF 9 Unmodified _LPYQGHNSF_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.749267578125 2 531.753798 1061.49304 -0.19525 -0.00010383 -1.1697 -0.00062201 -1.365 -0.00072584 531.7529525475696 35.137 0.21157 35.137 35.053 35.265 0 24 10 3 0 0 0 0.0044708 1 18557 18557 118.89 55.332 1 15985000 36839 941 24440 24926 43441 43441 -0.03524287250661473 LPYQGHNSF 9 Unmodified _LPYQGHNSF_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7525634765625 2 531.753798 1061.49304 -0.42788 -0.00022753 0.46081 0.00024504 0.032933 1.7512E-05 531.7539838295269 35.287 0.30679 35.064 34.895 35.201 -0.2224 34 13 3 0 0 0 0.0036082 1 18436 18436 123.45 49.054 1 14690000 36840 941 24440 24926 43442 43442 -0.03524287250661473 LPYQGHNSF 9 Unmodified _LPYQGHNSF_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7533569335938 2 531.753798 1061.49304 0.40055 0.000213 -0.34931 -0.00018575 0.051248 2.7251E-05 531.7537152094371 39.748 0.37177 35.297 35.107 35.479 -4.4509 60 23 3 0 0 0 0.0004779 2 23559 23559;23699 144.35 69.954 1 85423000 36841 941 24440 24926 43443;43444 43443 -0.03524287250661473 LPYQGHNSF 9 Unmodified _LPYQGHNSF_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.753798 1061.49304 0.0223 1.1858E-05 0.17148 9.1185E-05 0.19378 0.00010304 531.7537362448054 35.058 0.16782 35.085 34.996 35.164 0.027401 -0.060727 0.00021369 NaN 144.35 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 744540 36842 941 24440 24926 -0.03524287250661473 LPYQLIAEF 9 Unmodified _LPYQLIAEF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3005981445312 2 547.30005 1092.58555 0.27723 0.00015173 -0.15757 -8.6237E-05 0.11966 6.549E-05 547.3001453428175 94.957 0.37292 94.589 94.402 94.775 -0.36815 41 18 3 0 0 0 0.32871 1 51874 51874 15.847 0 1 1409700 36843 2139 24441 24927 43445 43445 0.04295797762847542 LPYQLIAEF 9 Unmodified _LPYQLIAEF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3013305664062 2 547.30005 1092.58555 1.27 0.0006951 1.3466 0.00073702 2.6167 0.0014321 547.3004492066445 100.07 0.17379 93.897 93.804 93.978 -6.1757 23 10 3 0 0 0 0.14602 1 66850 66850 28.487 0 1 39240000 36844 2139 24441 24927 43446 43446 0.04295797762847542 LPYQLKSL 8 Unmodified _LPYQLKSL_ 0 0 0 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 nc|ENSG00000162869|Q6ZMI0-3|PPP1R21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2900390625 2 481.289485 960.564418 0.56328 0.0002711 0.40559 0.00019521 0.96888 0.00046631 481.28962012595593 53.564 0.22388 53.112 52.943 53.167 -0.45173 17 10 2 0 0 0 0.76266 1 29007 29007 11.64 0 1 1352800 36845 6922 24442 24928 43447 43447 0.08255832453994572 LPYQPSSNWEL 11 Unmodified _LPYQPSSNWEL_ 0 0 0 REV__ENST00000422364.2_1_11:63995162-63996053:+|nuORF REV__ENST00000422364.2_1_11:63995162-63996053:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3251342773438 2 667.324785 1332.63502 1.1328 0.00075594 0.29969 0.00019999 1.4325 0.00095593 667.3248287456923 64.371 0.51457 58.196 57.955 58.47 -6.1757 59 27 3 0 0 0 0.47965 1 41610 41610 17.443 0.32975 1 34552000 + 36846 26856 24443 24929 43448 43448 -0.017995390189980753 LPYRATENDIY 11 Unmodified _LPYRATENDIY_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8360595703125 2 677.835517 1353.65648 -0.60082 -0.00040725 0.64957 0.0004403 0.048751 3.3045E-05 677.8359236316935 41.346 0.34384 41.346 41.137 41.48 0 64 16 5 0 0 0 0.014635 2 22222 22222;22335 59.052 36.24 1 112120000 36847 3981;7827 24444 24930 43449;43450 43449 -0.006201539902804143 LPYRATENDIY 11 Unmodified _LPYRATENDIY_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8341064453125 2 677.835517 1353.65648 -0.36545 -0.00024772 0.55682 0.00037743 0.19136 0.00012971 677.8356605227185 41.716 0.25661 41.409 41.259 41.515 -0.30682 33 11 4 0 0 0 0.058008 1 22087 22087 51.488 51.488 1 30882000 36848 3981;7827 24444 24930 43451 43451 -0.006201539902804143 LPYRATENDIY 11 Unmodified _LPYRATENDIY_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.3375854492188 2 677.835517 1353.65648 1.3359 0.00090549 -0.14881 -0.00010087 1.187 0.00080462 677.8353649915963 47.397 0.55219 42.163 41.899 42.451 -5.2339 112 34 4 0 0 0 0.0011221 3 29256 29256;29393;29531 97.741 97.741 1 299430000 36849 3981;7827 24444 24930 43452;43453;43454 43452 -0.006201539902804143 LPYRVLDAL 9 Unmodified _LPYRVLDAL_ 0 0 0 ENSG00000112578|ENST00000230340|BYSL ENSG00000112578|ENST00000230340|BYSL ENSG00000112578|ENST00000230340|BYSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3140869140625 2 530.313492 1058.61243 0.43173 0.00022895 0.98205 0.0005208 1.4138 0.00074975 530.3139232841199 68.338 0.28561 67.857 67.705 67.99 -0.48071 21 12 2 0 0 0 0.091924 1 37358 37358 34.932 8.6639 1 1631500 36850 2902 24445 24931 43455 43455 0.08546906374044738 LPYRVLDAL 9 Unmodified _LPYRVLDAL_ 0 0 0 ENSG00000112578|ENST00000230340|BYSL ENSG00000112578|ENST00000230340|BYSL ENSG00000112578|ENST00000230340|BYSL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.313492 1058.61243 0.34588 0.00018342 -0.43877 -0.00023269 -0.09289 -4.9261E-05 530.3135070624782 67.835 0.2887 67.853 67.727 68.016 0.018028 -0.0023646 -0.0013058 NaN 34.932 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1606100 36851 2902 24445 24931 0.08546906374044738 LPYRYITY 8 Unmodified _LPYRYITY_ 0 0 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7930297851562 2 544.792392 1087.57023 0.94029 0.00051226 -0.29186 -0.00015901 0.64842 0.00035326 544.7919671190451 71.985 1.1645 65.809 65.304 66.468 -6.1757 144 61 3 0 0 0 0.70294 1 46986 46986 16.942 0 1 104630000 36852 3974 24446 24932 43456 43456 0.0299493096565584 LPYSEKMTVLF 11 Unmodified _LPYSEKMTVLF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3516845703125 2 664.351957 1326.68936 NaN NaN NaN NaN NaN NaN NaN 74.988 1 75.034 74.534 75.534 0.045959 0 0 0 0.61053 1 41344 41344 20.415 1.1575 1 36853 10186 24447 24933 43457 43457 0.0390833680819469 LPYSEKMTVLF 11 Unmodified _LPYSEKMTVLF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.8543090820312 2 664.351957 1326.68936 0.77931 0.00051774 -0.011048 -7.3395E-06 0.76827 0.0005104 664.3522170377231 91.789 0.46942 85.614 85.27 85.74 -6.1757 53 25 3 0 0 0 0.0053109 2 60707 60578;60707 74.772 39.84 1 20002000 36854 10186 24447 24933 43458;43459 43459 0.0390833680819469 LPYSINMNVF 10 Unmodified _LPYSINMNVF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3016967773438 2 599.302267 1196.58998 -0.41626 -0.00024947 0.2129 0.00012759 -0.20336 -0.00012188 599.3018997211016 99 0.11313 92.824 92.764 92.878 -6.1757 9 6 2 0 0 0 0.00080371 1 65806 65806 114.65 76.473 1 23060000 36855 2053 24448 24934 43460 43460 -0.0004506108589339419 LPYSINMNVF 10 Oxidation (M) _LPYSINM(Oxidation (M))NVF_ LPYSINM(1)NVF LPYSINM(65)NVF 0 0 1 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MSMS AL20221201_MKP_PDAC_01 4 607.3009033203125 2 607.299724 1212.5849 NaN NaN NaN NaN NaN NaN NaN 80.599 1 74.423 73.923 74.923 -6.1757 0 0 0 0.0192 1 52886 52886 65.235 36.748 1 36856 2053 24448 24935 43461 43461 352 -0.012893649485022252 LPYSNLIEYS 10 Unmodified _LPYSNLIEYS_ 0 0 0 REV__ENST00000569118.1_1_16:69751908-69760342:-|nuORF REV__ENST00000569118.1_1_16:69751908-69760342:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 599.8048095703125 2 599.803154 1197.59175 NaN NaN NaN NaN NaN NaN NaN 99.055 1 92.879 92.379 93.379 -6.1757 0 0 0 0.47175 1 65855 65855 27.629 5.8822 1 + 36857 28957 24449 24936 43462 43462 0.0008627120371329511 LPYSTVRKY 9 Unmodified _LPYSTVRKY_ 0 0 0 ENST00000491666.5_2_21:47731377-47734756:-|nuORF ENST00000491666.5_2_21:47731377-47734756:-|nuORF ENST00000491666.5_2_21:47731377-47734756:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2138671875 3 376.213358 1125.61824 NaN NaN NaN NaN NaN NaN NaN 37.251 1 36.98 36.48 37.48 -0.27133 0 0 0 0.85261 1 19569 19569 1.1933 0 1 36858 14284 24450 24937 43463 43463 0.060460048857066795 LPYSVGRVL 9 Unmodified _LPYSVGRVL_ 0 0 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;ENST00000492705.1_1_22:32100639-32108292:-|nuORF nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3006286621094 2 502.300384 1002.58622 -0.17812 -8.9469E-05 0.62885 0.00031587 0.45074 0.0002264 502.3006115830029 55.64 0.20996 55.572 55.456 55.666 -0.068737 14 10 2 0 0 0 0.047788 1 30244 30244 45.7 20.3 1 3280700 36859 9157 24451 24938 43464 43464 0.08502637202582264 LPYTVVIHY 9 Unmodified _LPYTVVIHY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8078002929688 2 552.808042 1103.60153 0.52761 0.00029167 -0.46514 -0.00025713 0.062472 3.4535E-05 552.8077626469658 63.676 0.38128 63.19 62.992 63.373 -0.48617 73 17 6 0 0 0 0.0081063 2 34773 34667;34773 106.85 58.5 1 98746000 36860 7176 24452 24939 43465;43466 43466 0.05387503999759247 LPYTVVIHY 9 Unmodified _LPYTVVIHY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8099975585938 2 552.808042 1103.60153 0.4709 0.00026032 0.0025058 1.3852E-06 0.47341 0.0002617 552.808133778812 63.215 0.41419 63.193 63.008 63.422 -0.021614 109 20 7 0 0 0 0.0058506 2 34522 34522;34633 114.94 60.17 1 174260000 36861 7176 24452 24939 43467;43468 43467 0.05387503999759247 LPYTVVIHY 9 Unmodified _LPYTVVIHY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.808349609375 2 552.808042 1103.60153 0.91892 0.00050799 -0.076022 -4.2025E-05 0.8429 0.00046596 552.8079042826306 70.293 0.86852 64.117 63.727 64.596 -6.1757 155 48 4 0 0 0 8.5836E-05 4 45850 45717;45850;45975;46102 153.26 89.026 1 679490000 36862 7176 24452 24939 43469;43470;43471;43472 43470 0.05387503999759247 LPYTVVIHY 9 Unmodified _LPYTVVIHY_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 552.808042 1103.60153 0.44429 0.00024561 0.013212 7.3038E-06 0.4575 0.00025291 553.3092509939096 63.195 0.19841 63.195 63.073 63.272 0 0.0022828 0.00029379 NaN 114.94 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 969220 36863 7176 24452 24939 0.05387503999759247 LPYVGKELNM 10 Unmodified _LPYVGKELNM_ 0 0 0 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 ENSG00000124570|ENST00000380539|SERPINB6 MSMS AL20221201_MKP_PDAC_01 4 582.3109741210938 2 582.310092 1162.60563 NaN NaN NaN NaN NaN NaN NaN 63.108 1 56.932 56.432 57.432 -6.1757 0 0 0 0.18903 1 40764 40764 43.982 14.9 1 36864 3799 24453 24940 43473 43473 0.03083225431169012 LPYVTNQTY 9 Unmodified _LPYVTNQTY_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.77490234375 2 549.776939 1097.53933 0.77075 0.00042374 -0.99317 -0.00054602 -0.22243 -0.00012229 549.7759896064905 50.708 0.18814 50.295 50.15 50.338 -0.41351 22 8 3 0 0 0 0.026094 1 27300 27300 57.471 25.354 1 6836900 36865 720 24454 24941 43474 43474 -0.005542671392277043 LPYVTNQTY 9 Unmodified _LPYVTNQTY_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7767944335938 2 549.776939 1097.53933 0.038894 2.1383E-05 -2.4329 -0.0013375 -2.394 -0.0013161 549.7755684096791 58.06 0.2511 52.033 51.905 52.156 -6.0275 17 13 2 0 0 0 0.026094 1 37138 37138 57.471 23.07 1 25267000 36866 720 24454 24941 43475 43475 -0.005542671392277043 LPYVTNQTY 9 Unmodified _LPYVTNQTY_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.776939 1097.53933 0.5027 0.00027637 2.466 0.0013557 2.9687 0.0016321 549.7786315176058 50.177 0.35403 50.177 49.905 50.259 0 -0.059064 0.002268 NaN 57.471 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1943000 36867 720 24454 24941 -0.005542671392277043 LPYVYKFCL 9 Unmodified _LPYVYKFCL_ 0 0 0 REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF REV__ENST00000367142.4_1_1:205682466-205682574:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5405883789062 3 382.540306 1144.59909 -0.49215 -0.00018827 0.11875 4.5427E-05 -0.3734 -0.00014284 382.5403616492498 19.626 0.18714 19.626 19.541 19.728 0 83 31 3 0 0 0 0.57757 1 9795 9795 2.7352 0.64919 1 3432100 + 36868 25975 24455 24942 43476 43476 0.03257332270459301 LQAFVEAFFF 10 Unmodified _LQAFVEAFFF_ 0 0 0 ENSG00000175764|ENST00000321582|TTLL11 ENSG00000175764|ENST00000321582|TTLL11 ENSG00000175764|ENST00000321582|TTLL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8789672851562 3 406.877975 1217.6121 NaN NaN NaN NaN NaN NaN NaN 8.862 1 8.7704 8.2704 9.2704 -0.09156 0 0 0 1.0019 1 4342 4342 0.15932 0.01943 1 36869 8539 24456 24943 43477 43477 0.011994866541726878 LQAHLHSL 8 Unmodified _LQAHLHSL_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7615966796875 2 459.761426 917.5083 0.37184 0.00017096 0.54416 0.00025019 0.916 0.00042114 459.7617486240579 40.176 0.41727 35.646 35.487 35.904 -4.5294 55 35 2 0 0 0 0.05164 2 23907 23907;24041 149.99 68.131 1 36738000 36870 1262 24457 24944 43478;43479 43478 0.04624624337191108 LQALPVTR 8 Unmodified _LQALPVTR_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7779846191406 2 449.279452 896.544351 0.9351 0.00042012 0.01166 5.2388E-06 0.94676 0.00042536 449.2795290028622 68.431 0.2048 68.456 68.357 68.562 0.025146 13 9 2 0 0 0 8.7369 1 37587 37587 7.9102 0 1 959240 36871 4712 24458 24945 43480 43480 0.09194081514056052 LQAMKQAERT 10 Unmodified _LQAMKQAERT_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3159790039062 2 588.313697 1174.61284 0.32908 0.0001936 2.5929 0.0015254 2.922 0.001719 588.3152108917647 73.319 0.21919 73.362 73.251 73.47 0.042999 17 9 2 0 0 0 0.67033 1 40437 40437 6.2058 0.47393 1 1495800 + 36872 18245 24459 24946 43481 43481 0.03251958031569302 LQAPAQVPSL 10 Unmodified _LQAPAQVPSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2793579101562 2 512.295299 1022.57605 0.44372 0.00022732 3.4842 0.0017849 3.9279 0.0020123 512.2968952568528 67.845 0.27451 61.669 61.48 61.754 -6.1757 24 15 2 0 0 0 0.073654 1 44285 44285 38.176 0 1 15827000 36873 2059 24460 24947 43482 43482 0.06566029477335178 LQARRQGQAL 10 Unmodified _LQARRQGQAL_ 0 0 0 REV__ENSG00000186710|ENST00000335621|CFAP73 REV__ENSG00000186710|ENST00000335621|CFAP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8916015625 3 380.891389 1139.65234 0.030366 1.1566E-05 0.42977 0.00016369 0.46013 0.00017526 380.8915763342504 16.762 0.15137 16.767 16.693 16.844 0.0050564 23 9 3 0 0 0 0.40046 1 8412 8412 21.59 21.59 1 3349000 + 36874 23590 24461 24948 43483 43483 0.08809846097324225 LQASALLAQ 9 Unmodified _LQASALLAQ_ 0 0 0 ENST00000416600.6_1_20:3846990-3847266:+|nuORF ENST00000416600.6_1_20:3846990-3847266:+|nuORF ENST00000416600.6_1_20:3846990-3847266:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.5322265625 1 914.530558 913.523281 0.44764 0.00040938 0.38655 0.00035352 0.83419 0.00076289 914.5305029863895 60.504 0.19545 60.504 60.407 60.603 0 13 8 2 0 0 0 0.094149 1 33755 33755 34.402 0 1 749080 36875 13046 24462 24949 43484 43484 0.06306071414519465 LQASRSDIKLF 11 Unmodified _LQASRSDIKLF_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5787658691406 3 426.578588 1276.71394 0.25993 0.00011088 1.0809 0.00046109 1.3408 0.00057197 426.57900123351055 27.925 0.32359 27.955 27.84 28.163 0.029564 18 12 2 0 0 0 0.67892 1 14529 14529 6.2344 0.45093 1 2369700 36876 1546 24463 24950 43485 43485 0.08664733005934977 LQAWPGRR 8 Unmodified _LQAWPGRR_ 0 0 0 REV__ENSG00000134463|ENST00000379215|ECHDC3 REV__ENSG00000134463|ENST00000379215|ECHDC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2792663574219 2 492.280318 982.546083 NaN NaN NaN NaN NaN NaN NaN 77.802 1 77.854 77.354 78.354 0.052452 0 0 0 0.97444 1 42949 42949 2.3027 0 1 + 36877 19986 24464 24951 43486 43486 0.054111353226630854 LQAYAFLQYLR 11 Unmodified _LQAYAFLQYLR_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000436236.1_1_3:31638325-31661336:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 693.3822631835938 2 693.382437 1384.75032 0.75903 0.0005263 -1.4352 -0.00099517 -0.67621 -0.00046887 693.3814986667868 54.158 0.27942 48.292 48.139 48.419 -5.8653 29 15 3 0 0 0 0.22407 1 34386 34386 15.248 0 1 12186000 36878 7010 24465 24952 43487 43487 0.07333609902639182 LQCERYPF 8 Unmodified _LQCERYPF_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2510986328125 2 528.252577 1054.4906 0.3617 0.00019107 -3.1262 -0.0016514 -2.7645 -0.0014603 528.2506183858053 62.573 0.17297 62.573 62.506 62.679 0 11 7 2 0 0 0 0.76266 1 34923 34923 10.183 0 1 972420 + 36879 18891 24466 24953 43488 43488 -0.034464589800109025 LQCVRKRLLH 10 Unmodified _LQCVRKRLLH_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5929565429688 3 422.592286 1264.75503 0.93265 0.00039413 0.86335 0.00036484 1.796 0.00075898 422.5925752802834 82.082 1.0204 75.906 75.195 76.215 -6.1757 106 56 3 0 0 0 0.67413 4 53835 53564;53701;53835;53966 5.7834 4.0412 1 22005000 36880 10049 24467 24954 43489;43490;43491;43492 43491 0.13324215564421138 LQDEDEDEGS 10 Unmodified _LQDEDEDEGS_ 0 0 0 REV__ENSG00000147912|ENST00000432825|FBXO10 REV__ENSG00000147912|ENST00000432825|FBXO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7144775390625 2 568.71493 1135.41531 0.45535 0.00025896 -1.656 -0.00094177 -1.2006 -0.0006828 568.713737582384 54.92 0.28722 54.92 54.79 55.077 0 31 12 3 0 0 0 0.67033 1 30480 30480 6.2058 0 1 4718400 + 36881 20921 24468 24955 43493 43493 -0.14698434488036582 LQDFLESY 8 Unmodified _LQDFLESY_ 0 0 0 ENST00000345662.5_1_2:32379583-32379700:+|nuORF ENST00000345662.5_1_2:32379583-32379700:+|nuORF ENST00000345662.5_1_2:32379583-32379700:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2920837402344 2 507.742565 1013.47058 0.8175 0.00041508 0.96741 0.0004912 1.7849 0.00090628 507.74360227957817 54.777 0.21145 54.777 54.641 54.852 0 13 8 2 0 0 0 8.7369 1 30400 30400 9.3474 0 1 2468000 36882 12027 24469 24956 43494 43494 -0.03561931438935062 LQDGLQITV 9 Unmodified _LQDGLQITV_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000579402.1_1_17:25958249-25965426:+|nuORF;ENST00000448970.6_1_17:25958249-25968014:+|nuORF;ENST00000579930.5_1_17:25958249-25969437:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7792663574219 2 493.779482 985.544411 0.077654 3.8344E-05 0.16032 7.9165E-05 0.23798 0.00011751 493.7794434970576 64.891 0.31897 64.891 64.694 65.013 0 28 14 2 0 0 0 0.028475 1 36139 36139 56.177 16.227 1 2220600 36883 7822 24470 24957 43495 43495 0.051060367233731085 LQDLSRLQ 8 Unmodified _LQDLSRLQ_ 0 0 0 REV__NUMA1|p.E1639D|1|0.16|ENSG00000137497|chr11:72009108-72009108|C/A|missense_variant REV__NUMA1|p.E1639D|1|0.16|ENSG00000137497|chr11:72009108-72009108|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.5526733398438 1 972.547271 971.539994 0.30543 0.00029704 -0.076448 -7.4349E-05 0.22898 0.00022269 972.5436134304576 93.865 0.37952 93.445 93.214 93.593 -0.42044 33 16 3 0 0 0 0.78031 1 51219 51219 10.074 0 1 614180 + 36884 30062 24471 24958 43496 43496 0.053085723004642205 LQDMSVGNPLL 11 Unmodified _LQDMSVGNPLL_ 0 0 0 REV__ENST00000262554.6_1_9:94794569-94794641:-|nuORF REV__ENST00000262554.6_1_9:94794569-94794641:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8101806640625 2 593.810456 1185.60636 -0.020609 -1.2238E-05 -0.045055 -2.6754E-05 -0.065665 -3.8992E-05 593.8100210362906 80.369 0.54352 80.426 80.218 80.762 0.057587 60 25 3 0 0 0 0.24216 1 44346 44346 29.841 0 1 66369000 + 36885 25026 24472 24959 43497 43497 0.02098020080211427 LQDQLIVF 8 Unmodified _LQDQLIVF_ 0 0 0 ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA ENSG00000137996|ENST00000370128|RTCA ENSG00000137996|ENST00000370128|RTCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.55224609375 1 975.550959 974.543683 0.3604 0.00035159 -0.039066 -3.8111E-05 0.32133 0.00031348 975.5512140263775 88.83 0.314 88.326 88.205 88.519 -0.50423 21 13 2 0 0 0 0.80068 1 48650 48650 6.2058 0 1 564060 36886 5000 24473 24960 43498 43498 0.055392420743373805 LQDRRSGMPGC 11 Unmodified _LQDRRSGMPGC_ 0 0 0 ENST00000542575.6_2_19:47278508-47278697:-|nuORF ENST00000542575.6_2_19:47278508-47278697:-|nuORF ENST00000542575.6_2_19:47278508-47278697:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.1930847167969 3 407.193863 1218.55976 NaN NaN NaN NaN NaN NaN NaN 16.966 1 16.971 16.471 17.471 0.0050564 0 0 0 0.94301 1 8533 8533 0.094841 0 1 36887 15063 24474 24961 43499 43499 -0.04077743022708091 LQDTQWRGGF 10 Unmodified _LQDTQWRGGF_ 0 0 0 ENST00000485231.1_1_17:19645969-19646688:-|nuORF ENST00000485231.1_1_17:19645969-19646688:-|nuORF ENST00000485231.1_1_17:19645969-19646688:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2959594726562 2 604.296362 1206.57817 NaN NaN NaN NaN NaN NaN NaN 57.27 1 57.27 56.77 57.77 0 0 0 0 0.97556 1 31867 31867 6.2058 3.903 1 36888 14166 24475 24962 43500 43500 -0.016855417848546494 LQDVYQLI 8 Unmodified _LQDVYQLI_ 0 0 0 ENST00000462888.1_1_3:69426261-69435140:-|nuORF ENST00000462888.1_1_3:69426261-69435140:-|nuORF ENST00000462888.1_1_3:69426261-69435140:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.546875 1 991.545874 990.538597 -0.034955 -3.4659E-05 1.444 0.0014318 1.4091 0.0013972 991.5471782432754 62.716 0.30925 62.716 62.611 62.92 0 21 12 2 0 0 0 0.60622 1 35066 35066 25.399 8.457 1 1368900 36889 13688 24476 24963 43501 43501 0.04294938211717181 LQEDADGSLDF 11 Unmodified _LQEDADGSLDF_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000577779.1_1_18:9594966-9614482:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2678833007812 2 605.267133 1208.51971 0.091451 5.5352E-05 2.2813 0.0013808 2.3728 0.0014362 605.2680025815098 65.593 0.36865 65.109 64.898 65.267 -0.48428 23 16 2 0 0 0 0.68427 1 35818 35818 5.7319 0 1 1459700 36890 16284 24477 24964 43502 43502 -0.07620687940652715 LQEEDESPRS 10 Unmodified _LQEEDESPRS_ 0 0 0 ENSG00000106367|ENST00000337619|AP1S1 ENSG00000106367|ENST00000337619|AP1S1 ENSG00000106367|ENST00000337619|AP1S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1829833984375 3 397.182563 1188.52586 0.54932 0.00021818 0.69759 0.00027707 1.2469 0.00049525 397.1829114336224 52.441 0.24828 52.008 51.891 52.139 -0.43367 26 12 3 0 0 0 0.57893 1 28325 28325 7.4771 1.6089 1 6865000 36891 2422 24478 24965 43503 43503 -0.06086169709146816 LQEEGWLEGE 10 Unmodified _LQEEGWLEGE_ 0 0 0 ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP MSMS AL20221201_MKP_PDAC_01 4 397.1858825683594 3 397.183904 1188.52988 NaN NaN NaN NaN NaN NaN NaN 57.783 1 51.756 51.256 52.256 -6.0275 0 0 0 0.68942 1 36977 36977 10.899 0.58372 1 36892 10048 24479 24966 43504 43504 -0.056840802154283665 LQEEGWLEGE 10 Unmodified _LQEEGWLEGE_ 0 0 0 ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP ENSG00000198087|ENST00000359314|CD2AP MSMS AL20221201_MKP_PDAC_01 4 397.1842041015625 3 397.183904 1188.52988 NaN NaN NaN NaN NaN NaN NaN 58.173 1 52.145 51.645 52.645 -6.0275 0 0 0 0.66657 1 37262 37262 11.518 1.2026 1 36893 10048 24479 24966 43505 43505 -0.056840802154283665 LQEEKEEQMR 10 Unmodified _LQEEKEEQMR_ 0 0 0 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 ENSG00000115904|ENST00000402219|SOS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8808288574219 3 440.546848 1318.61871 -0.2624 -0.0001156 -0.97566 -0.00042982 -1.2381 -0.00054542 440.54638584653696 25.611 0.16705 25.611 25.528 25.695 0 18 7 3 0 0 0 0.70151 1 13140 13140 1.3296 0 1 1210900 36894 3173 24480 24967 43506 43506 -0.02784988247435649 LQEEYEELLHY 11 Unmodified _LQEEYEELLHY_ 0 0 0 ENSG00000152359|ENST00000428202|POC5;ENST00000508467.5_1_5:75001514-75013149:-|nuORF ENSG00000152359|ENST00000428202|POC5 ENSG00000152359|ENST00000428202|POC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 733.3441162109375 2 733.345914 1464.67728 0.16344 0.00011986 -2.1081 -0.001546 -1.9447 -0.0014261 733.8458150924325 52.878 0.36193 52.878 52.678 53.039 0 33 16 3 0 0 0 0.53952 1 29254 29254 14.405 8.6735 1 7381600 36895 6180 24481 24968 43507 43507 -0.03647608401274738 LQEFSNFDF 9 Unmodified _LQEFSNFDF_ 0 0 0 REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8421020507812 3 382.84159 1145.50294 1.1059 0.00042337 0.31706 0.00012138 1.4229 0.00054476 382.84163938325975 32.707 0.37317 28.851 28.67 29.044 -3.8562 37 19 3 0 0 0 0.5029 1 18637 18637 4.5289 1.2092 1 17207000 + 36896 17900 24482 24969 43508 43508 -0.0639914403595867 LQEFSNFDF 9 Unmodified _LQEFSNFDF_ 0 0 0 REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 382.84159 1145.50294 -0.6062 -0.00023208 -0.016204 -6.2034E-06 -0.62241 -0.00023828 382.8415389235969 28.724 0.2393 28.724 28.6 28.839 0 -0.063267 -0.00013299 NaN 4.5289 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6683900 + 36897 17900 24482 24969 -0.0639914403595867 LQEGTVLVEA 10 Unmodified _LQEGTVLVEA_ 0 0 0 REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7907104492188 2 529.790047 1057.56554 0.38722 0.00020515 0.092775 4.9151E-05 0.48 0.0002543 529.7901924808328 63.616 0.2801 63.616 63.499 63.779 0 22 11 3 0 0 0 0.38225 1 35518 35518 22.658 1.1211 1 1677500 + 36898 21288 24483 24970 43509 43509 0.03906002032226752 LQEIQEAEEQI 11 Unmodified _LQEIQEAEEQI_ 0 0 0 ENST00000383744.8_1_3:44673993-44688118:+|nuORF ENST00000383744.8_1_3:44673993-44688118:+|nuORF ENST00000383744.8_1_3:44673993-44688118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3302001953125 2 665.330264 1328.64598 0.38338 0.00025508 -3.1141 -0.0020719 -2.7308 -0.0018169 665.8288077483896 73.295 0.13588 73.295 73.229 73.365 0 10 7 2 0 0 0 0.70069 1 40818 40818 4.1895 0 1 920550 36899 12638 24484 24971 43510 43510 -0.0052018143535406125 LQEIYQELTW 10 Unmodified _LQEIYQELTW_ 0 0 0 nc|ENSG00000090659|Q9NNX6-12|CD209;nc|ENSG00000090659|Q9NNX6-3|CD209;nc|ENSG00000090659|Q9NNX6-11|CD209;nc|ENSG00000090659|Q9NNX6-7|CD209;nc|ENSG00000090659|Q9NNX6-6|CD209;nc|ENSG00000090659|Q9NNX6-10|CD209;nc|ENSG00000090659|Q9NNX6-2|CD209;nc|ENSG00000090659|Q9NNX6-5|CD209;ENSG00000090659|ENST00000315599|CD209 nc|ENSG00000090659|Q9NNX6-12|CD209 nc|ENSG00000090659|Q9NNX6-12|CD209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.8319702148438 2 661.834985 1321.65542 -0.7005 -0.00046361 -2.7354 -0.0018104 -3.4359 -0.002274 661.8326865069504 33.929 0.20805 33.929 33.783 33.991 0 13 9 2 0 0 0 0.57893 1 17856 17856 12.241 2.0901 1 2372700 36900 1565 24485 24972 43511 43511 0.007456316407797203 LQELAQHVF 9 Unmodified _LQELAQHVF_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8296508789062 2 542.792924 1083.57129 0.22597 0.00012266 1.014 0.00055039 1.24 0.00067304 542.7932548731915 75.253 0.26834 75.299 75.224 75.492 0.045967 24 12 3 0 0 0 0.19633 1 41536 41536 20.454 6.9457 1 2066900 + 36901 18564 24486 24973 43512 43512 0.032851453345756454 LQELHAGL 8 Unmodified _LQELHAGL_ 0 0 0 REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF REV__ENST00000296885.7_1_6:88117749-88144792:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7480773925781 2 440.747985 879.481417 -0.43705 -0.00019263 -0.92154 -0.00040617 -1.3586 -0.0005988 440.7475818747791 35.566 0.32067 35.343 35.151 35.472 -0.2224 23 14 2 0 0 0 0.18875 1 18585 18585 74.423 0 1 8310900 + 36902 24632 24487 24974 43513 43513 0.03685515725987898 LQELIVSF 8 Unmodified _LQELIVSF_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D REV__nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.2515258789062 2 474.773668 947.532783 1.2454 0.00059127 -3.497 -0.0016603 -2.2516 -0.001069 474.7739959104101 86.63 0.20734 80.455 80.338 80.546 -6.1757 14 10 2 0 0 0 8.7369 1 57162 57162 19.257 0 1 5284200 + 36903 21379 24488 24975 43514 43514 0.056918397000458754 LQEQKQLQQ 9 Unmodified _LQEQKQLQQ_ 0 0 0 REV__ENSG00000170743|ENST00000318881|SYT9 REV__ENSG00000170743|ENST00000318881|SYT9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5650634765625 3 381.543655 1141.60914 1.4965 0.000571 -0.75578 -0.00028836 0.74076 0.00028263 381.8772482641223 19.622 0.06126 16.965 16.926 16.987 -2.6564 5 3 2 0 0 0 0.21144 1 10411 10411 0.77653 0.078866 1 2040300 + 36904 22507 24489 24976 43515 43515 0.04399611529379399 LQERGLPEL 9 Unmodified _LQERGLPEL_ 0 0 0 ENSG00000231274|ENST00000612221|SBK3 ENSG00000231274|ENST00000612221|SBK3 ENSG00000231274|ENST00000612221|SBK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7979736328125 2 527.798206 1053.58186 0.8307 0.00043844 -0.51978 -0.00027434 0.31091 0.0001641 527.7978399362338 53.92 0.304 53.92 53.728 54.032 0 25 13 2 0 0 0 0.1685 1 29939 29939 26.268 0 1 4012200 36905 10617 24490 24977 43516 43516 0.057211279889770594 LQFEHSVTG 9 Unmodified _LQFEHSVTG_ 0 0 0 REV__ENSG00000162396|ENST00000371279|PARS2 REV__ENSG00000162396|ENST00000371279|PARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2538757324219 2 509.253631 1016.49271 0.10957 5.5799E-05 0.42133 0.00021456 0.5309 0.00027036 509.25396361899584 32.499 0.17659 32.529 32.414 32.591 0.029743 10 6 2 0 0 0 0.28023 1 17064 17064 18.146 0 1 1654500 + 36906 21640 24491 24978 43517 43517 -0.014877069705107715 LQFIPVVPPR 10 Unmodified _LQFIPVVPPR_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2418823242188 3 389.241248 1164.70191 NaN NaN NaN NaN NaN NaN NaN 61.418 1 60.929 60.429 61.429 -0.48932 0 0 0 1.0004 1 33452 33452 0.62683 0.35781 1 36907 8319 24492 24979 43518 43518 0.1261516105339524 LQFIPVVPPR 10 Unmodified _LQFIPVVPPR_ 0 0 0 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 ENSG00000173402|ENST00000308775|DAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2418823242188 3 389.241248 1164.70191 0.23032 8.9652E-05 1.6521 0.00064305 1.8824 0.00073271 389.5762873739629 60.469 0.37701 60.425 60.138 60.515 -0.04351 23 18 2 0 0 0 0.70895 1 32975 32975 1.9064 1.1298 1 11138000 36908 8319 24492 24979 43519 43519 0.1261516105339524 LQFMMYEF 8 Unmodified _LQFMMYEF_ 0 0 0 REV__CON__Q2HJF0 REV__CON__Q2HJF0 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2869873046875 2 554.745739 1107.47692 NaN NaN NaN NaN NaN NaN NaN 63.198 1 63.198 62.698 63.698 0 0 0 0 0.97444 1 35253 35253 2.8892 0.31174 1 + + 36909 16867 24493 24980 43520 43520 -0.07251452803438951 LQFQKRCLF 9 Unmodified _LQFQKRCLF_ 0 0 0 nc|nan|Q8N4M7|C10orf126 nc|nan|Q8N4M7|C10orf126 nc|nan|Q8N4M7|C10orf126 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2366027832031 3 394.886588 1181.63793 -0.088854 -3.5087E-05 -1.0313 -0.00040724 -1.1201 -0.00044232 395.220188868891 51.701 0.078545 51.642 51.592 51.67 -0.058918 5 3 2 0 0 0 0.21404 1 27977 27977 5.2969 1.4206 1 590550 36910 16665 24494 24981 43521 43521 0.05438057624814974 LQFYFFFSLGT 11 Unmodified _LQFYFFFSLGT_ 0 0 0 ENSG00000176219|ENST00000315519|OR11H6;ENSG00000176198|ENST00000641082|OR11H4;ENSG00000258453|ENST00000556246|OR11H2;ENSG00000130538|ENST00000643195|OR11H1;nc|ENSG00000176198|Q8NGC9|OR11H4;nc|ENSG00000258453|Q8NH07|OR11H2;nc|ENSG00000130538|Q8NG94|OR11H1;ENSG00000257115|ENST00000550708|OR11H12 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3461303710938 2 685.344989 1368.67542 -0.019056 -1.306E-05 0.29211 0.0002002 0.27306 0.00018714 685.3452835305708 85.836 0.37094 85.836 85.581 85.952 0 36 15 3 0 0 0 0.7326 1 47463 47463 1.1933 0 1 531300 36911 8576 24495 24982 43522 43522 0.005834273714071969 LQGCHAITIK 10 Unmodified _LQGCHAITIK_ 0 0 0 REV__ENST00000449839.1_1_19:12618945-12619074:+|nuORF REV__ENST00000449839.1_1_19:12618945-12619074:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 542.299560546875 2 542.302601 1082.59065 NaN NaN NaN NaN NaN NaN NaN 20.285 1 17.592 17.092 18.092 -2.693 0 0 0 0.61997 1 10802 10802 20.415 1.0526 1 + 36912 27191 24496 24983 43523 43523 0.05265778353805217 LQGDEQRLYEF 11 Unmodified _LQGDEQRLYEF_ 0 0 0 nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A nc|ENSG00000177302|Q13472-3|TOP3A nc|ENSG00000177302|Q13472-3|TOP3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.5612487792969 3 466.561375 1396.66229 0.77148 0.00035994 -0.84139 -0.00039256 -0.06991 -3.2617E-05 466.5609790185897 50.765 0.39886 50.765 50.56 50.959 0 66 22 4 0 0 0 0.69316 1 27952 27952 2.2527 0.66045 1 57940000 36913 8673 24497 24984 43524 43524 -0.020170554786318462 LQGGPECMEL 10 Unmodified _LQGGPECMEL_ 0 0 0 REV__ENSG00000174776|ENST00000682715|WDR49 REV__ENSG00000174776|ENST00000682715|WDR49 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.276123046875 2 538.741185 1075.46782 0.12781 6.8858E-05 -4.1962 -0.0022607 -4.0684 -0.0021918 538.7388991040548 46.941 0.097351 46.941 46.901 46.999 0 5 4 2 0 0 0 0.23693 1 25714 25714 6.2058 0.97511 1 2006700 + 36914 22816 24498 24985 43525 43525 -0.06689846159770241 LQGNTSFAVY 10 Unmodified _LQGNTSFAVY_ 0 0 0 REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2752075195312 2 550.274564 1098.53457 0.46054 0.00025342 0.8292 0.00045629 1.2897 0.00070971 550.2749845675879 53.467 0.34578 53.016 52.859 53.205 -0.45173 48 16 4 0 0 0 0.1899 1 28917 28917 34.932 14.478 1 14951000 + 36915 28580 24499 24986 43526 43526 -0.010751512820206699 LQGNTSFAVY 10 Unmodified _LQGNTSFAVY_ 0 0 0 REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2756958007812 2 550.274564 1098.53457 1.059 0.00058275 -1.4633 -0.00080524 -0.40433 -0.00022249 550.2735708936359 60.698 0.38992 54.551 54.257 54.647 -6.1478 44 20 3 0 0 0 0.29752 2 38946 38946;39063 27.629 7.1752 1 43332000 + 36916 28580 24499 24986 43527;43528 43527 -0.010751512820206699 LQGNTSFAVY 10 Unmodified _LQGNTSFAVY_ 0 0 0 REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF REV__ENST00000540447.5_1_12:10856597-10862620:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 550.274564 1098.53457 0.46054 0.00025342 0.8292 0.00045629 1.2897 0.00070971 550.2749845675879 53.467 0.34578 53.016 52.859 53.205 -0.45173 0 0 NaN 34.932 48 16 4 NaN NaN NaN NaN 0 NaN NaN 0 14951000 + 36917 28580 24499 24986 -0.010751512820206699 LQGPLFGLKL 10 Unmodified _LQGPLFGLKL_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;nc|ENSG00000007923|Q9NVH1-3|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3392944335938 2 543.33951 1084.66447 0.86739 0.00047129 -1.3178 -0.00071602 -0.45043 -0.00024473 543.338768423462 94.786 0.12044 88.61 88.573 88.693 -6.1757 11 6 2 0 0 0 0.35903 1 62840 62840 24.021 0 1 5746100 36918 370 24500 24987 43529 43529 0.12552069787784603 LQGQQRTSI 9 Unmodified _LQGQQRTSI_ 0 0 0 ENST00000563365.1_2_2:55509501-55509765:+|nuORF ENST00000563365.1_2_2:55509501-55509765:+|nuORF ENST00000563365.1_2_2:55509501-55509765:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.787841796875 2 515.78563 1029.55671 NaN NaN NaN NaN NaN NaN NaN 43.567 1 43.256 42.756 43.756 -0.31039 0 0 0 0.047623 1 23185 23185 58.679 0 1 36919 15362 24501 24988 43530 43530 0.04311073186431713 LQGYYLIY 8 Unmodified _LQGYYLIY_ 0 0 0 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.224243164062 1 1032.54006 1031.53278 -0.4493 -0.00046392 4.4214 0.0045653 3.9721 0.0041013 1032.5460766723884 62.053 0.19179 62.053 61.951 62.143 0 11 7 2 0 0 0 8.7369 1 34546 34546 13.508 1.8676 1 1231600 36920 10928 24502 24989 43531 43531 0.018278397000358382 LQHEETTYI 9 Unmodified _LQHEETTYI_ 0 0 0 nc|ENSG00000123572|Q7Z2Y5-2|NRK;ENSG00000123572|ENST00000243300|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK nc|ENSG00000123572|Q7Z2Y5-2|NRK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2125549316406 3 378.520628 1132.54005 0.080326 3.0405E-05 2.3974 0.00090748 2.4778 0.00093789 378.52190888116047 31.296 0.12576 31.296 31.234 31.359 0 7 5 2 0 0 0 0.21798 1 16306 16306 1.1933 0 1 192500 36921 3718 24503 24990 43532 43532 -0.020914724902013404 LQHFKHYL 8 Unmodified _LQHFKHYL_ 0 0 0 REV__nc|ENSG00000148200|Q15406-3|NR6A1 REV__nc|ENSG00000148200|Q15406-3|NR6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2982788085938 2 543.298176 1084.5818 0.2141 0.00011632 -0.4019 -0.00021835 -0.1878 -0.00010203 543.2979404008795 81.076 0.32727 81.076 80.911 81.238 0 31 15 3 0 0 0 0.80975 1 45078 45078 0.79363 0 1 747280 + 36922 20932 24504 24991 43533 43533 0.04289172779635919 LQHFYPSR 8 Unmodified _LQHFYPSR_ 0 0 0 nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2809448242188 2 524.272158 1046.52976 1.2848 0.00067356 -2.4862 -0.0013034 -1.2014 -0.00062987 524.2714607284472 96.003 0.67467 89.827 89.63 90.305 -6.1757 109 40 5 0 0 0 0.70294 1 63907 63907 16.942 0.79319 1 367640000 36923 16132 24505 24992 43534 43534 0.008360093658893675 LQHHSQFT 8 Unmodified _LQHHSQFT_ 0 0 0 REV__ENSG00000134061|ENST00000256447|CD180 REV__ENSG00000134061|ENST00000256447|CD180 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2467956542969 2 499.246141 996.477728 -0.21055 -0.00010511 0.47333 0.00023631 0.26279 0.00013119 499.2462751282243 37.663 0.54215 37.391 37.157 37.699 -0.27133 70 24 4 0 0 0 0.64853 2 19720 19720;19820 21.747 0 1 16993000 + 36924 19949 24506 24993 43535;43536 43535 -0.02065154047852502 LQHHSQFT 8 Unmodified _LQHHSQFT_ 0 0 0 REV__ENSG00000134061|ENST00000256447|CD180 REV__ENSG00000134061|ENST00000256447|CD180 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2460327148438 2 499.246141 996.477728 0.80413 0.00040146 0.22627 0.00011297 1.0304 0.00051443 499.24613556517954 41.513 0.66332 36.905 36.599 37.262 -4.6079 111 43 3 0 0 0 0.50673 3 24919 24793;24919;25055 34.102 0 1 129290000 + 36925 19949 24506 24993 43537;43538;43539 43538 -0.02065154047852502 LQHLLKPVKR 10 Unmodified _LQHLLKPVKR_ 0 0 0 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.40283203125 2 616.403507 1230.79246 1.4268 0.00087948 -1.3358 -0.00082337 0.091022 5.6106E-05 616.4018864981297 103.78 0.104 97.607 97.556 97.66 -6.1757 29 19 2 0 0 0 0.72247 1 69537 69537 0.40072 0 1 10320000 36926 1673 24507 24994 43540 43540 0.18629630101668226 LQHPPAMFF 9 Unmodified _LQHPPAMFF_ 0 0 0 REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7688598632812 2 544.273312 1086.53207 0.21273 0.00011578 2.3856 0.0012984 2.5984 0.0014142 544.2744380448287 75.573 0.21272 75.621 75.494 75.707 0.047951 16 9 3 0 0 0 0.19613 1 41697 41697 12.532 1.4171 1 1022700 + 36927 16923 24508 24995 43541 43541 -0.007732782206630873 LQHQLDEAKL 10 Unmodified _LQHQLDEAKL_ 0 0 0 ENST00000416702.1_1_10:21318681-21319128:+|nuORF ENST00000416702.1_1_10:21318681-21319128:+|nuORF ENST00000416702.1_1_10:21318681-21319128:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8870544433594 3 398.887422 1193.64044 -0.53405 -0.00021303 0.48368 0.00019293 -0.050372 -2.0093E-05 398.8875750380611 19.252 0.22555 19.252 19.147 19.372 0 28 14 3 0 0 0 0.59286 1 9613 9613 11.518 1.2026 1 2860200 36928 13053 24509 24996 43542 43542 0.05136184563457391 LQHRPFHFF 9 Unmodified _LQHRPFHFF_ 0 0 0 REV__ENST00000357430.7_1_2:223806358-223806715:+|nuORF REV__ENST00000357430.7_1_2:223806358-223806715:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5515747070312 3 410.217325 1227.63015 0.38655 0.00015857 -0.54077 -0.00022183 -0.15423 -6.3266E-05 410.21707593846037 46.122 0.3028 46.094 45.926 46.229 -0.028011 35 13 3 0 0 0 0.18094 1 24766 24766 20.415 11.669 1 17923000 + 36929 25853 24510 24997 43543 43543 0.025436664195240155 LQIDNARLA 9 Unmodified _LQIDNARLA_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000425692.6_1_17:16723399-16724021:-|nuORF;ENST00000417510.5_1_17:16723399-16724042:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P02535-1;CON__Q148H6;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8 ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;ENSG00000111057|ENST00000388835|KRT18;CON__P19001;CON__P02535-1;CON__Q148H6;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2901611328125 2 507.290548 1012.56654 0.026388 1.3386E-05 -1.6833 -0.00085391 -1.6569 -0.00084052 507.2895497368289 40.667 0.22939 40.667 40.529 40.758 0 31 12 3 0 0 0 0.009483 1 21839 21839 81.89 6.9612 1 11584000 + 36930 169;167;2759;158;173;157;184 24511 24998 43544 43544 0.06076261191788035 LQIDNARLA 9 Unmodified _LQIDNARLA_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000425692.6_1_17:16723399-16724021:-|nuORF;ENST00000417510.5_1_17:16723399-16724042:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000534728.1_1_11:124983810-124984254:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__P02535-1;CON__Q148H6;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2;CON__Q9Z2K1;CON__Q3ZAW8 ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;ENSG00000111057|ENST00000388835|KRT18;CON__P19001;CON__P02535-1;CON__Q148H6;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2908325195312 2 507.290548 1012.56654 -0.10415 -5.2835E-05 0.58795 0.00029826 0.4838 0.00024543 507.290890276205 41.068 0.22827 40.765 40.659 40.887 -0.30304 26 10 3 0 0 0 0.018301 1 21730 21730 65.235 12.967 1 5191600 + 36931 169;167;2759;158;173;157;184 24511 24998 43545 43545 0.06076261191788035 LQIFNKVLFQG 11 Unmodified _LQIFNKVLFQG_ 0 0 0 ENST00000418194.6_1_2:174774769-174774829:-|nuORF ENST00000418194.6_1_2:174774769-174774829:-|nuORF ENST00000418194.6_1_2:174774769-174774829:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2541198730469 3 436.255446 1305.74451 0.064027 2.7932E-05 -2.6552 -0.0011583 -2.5912 -0.0011304 436.2542245982725 25.3 0.26466 22.417 22.322 22.586 -2.8831 24 14 2 0 0 0 0.73237 1 13826 13826 1.2148 0.4383 1 2445300 36932 13064 24512 24999 43546 43546 0.10386511390970554 LQIIQEKRGY 10 Unmodified _LQIIQEKRGY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.909912109375 3 416.575067 1246.70337 1.5575 0.0006488 0.16469 6.8608E-05 1.7222 0.00071741 416.5750574919917 35.991 0.32832 31.798 31.648 31.977 -4.1928 45 20 3 0 0 0 0.048562 1 20969 20969 59.013 21.242 1 8949600 36933 9424 24513 25000 43547 43547 0.08988750351522867 LQIKSVFHL 9 Unmodified _LQIKSVFHL_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8291015625 2 542.829309 1083.64407 0.34652 0.0001881 0.44354 0.00024077 0.79007 0.00042887 542.8293756010817 93.471 0.28757 87.295 87.233 87.521 -6.1757 27 17 2 0 0 0 0.078314 1 61895 61895 42.095 42.095 1 8657100 + 36934 22909 24514 25001 43548 43548 0.10558899127977384 LQIPKRNP 8 Unmodified _LQIPKRNP_ 0 0 0 ENST00000540114.5_3_12:27832463-27832556:+|nuORF ENST00000540114.5_3_12:27832463-27832556:+|nuORF ENST00000540114.5_3_12:27832463-27832556:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2980041503906 2 483.298176 964.581799 0.31415 0.00015183 -0.42842 -0.00020706 -0.11427 -5.5226E-05 483.2979673044792 24.674 0.19385 24.699 24.586 24.78 0.024429 13 7 2 0 0 0 0.5284 1 12731 12731 32.117 1.4804 1 3834200 36935 15028 24515 25002 43549 43549 0.09809172779648634 LQIPKRNP 8 Unmodified _LQIPKRNP_ 0 0 0 ENST00000540114.5_3_12:27832463-27832556:+|nuORF ENST00000540114.5_3_12:27832463-27832556:+|nuORF ENST00000540114.5_3_12:27832463-27832556:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2979125976562 2 483.298176 964.581799 0.14406 6.9623E-05 -0.021707 -1.0491E-05 0.12235 5.9132E-05 483.29805124592224 29.477 0.18741 29.507 29.402 29.589 0.030106 15 9 2 0 0 0 0.5284 1 15366 15366 32.117 1.4804 1 6910700 36936 15028 24515 25002 43550 43550 0.09809172779648634 LQIPPFRIT 9 Unmodified _LQIPPFRIT_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS AL20221201_MKP_PDAC_01 4 542.8310546875 2 542.829309 1083.64407 NaN NaN NaN NaN NaN NaN NaN 94.11 1 87.934 87.434 88.434 -6.1757 0 0 0 0.18978 1 62326 62326 34.402 3.7652 1 36937 529 24516 25003 43551 43551 0.10558899127977384 LQIYNLKKWIR 11 Unmodified _LQIYNLKKWIR_ 0 0 0 REV__ENST00000355112.7_1_15:91293288-91298045:+|nuORF REV__ENST00000355112.7_1_15:91293288-91298045:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9064636230469 4 369.477777 1473.882 0.11799 4.3595E-05 1.696 0.00062664 1.814 0.00067023 369.72917850869004 37.215 0.2398 37.215 37.056 37.296 0 14 11 2 0 0 0 0.306 1 19801 19801 0.08335 0.010087 1 4118900 + 36938 25800 24517 25004 43552 43552 0.16401839990408007 LQKDYVQL 8 Unmodified _LQKDYVQL_ 0 0 0 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 ENSG00000173275|ENST00000339249|ZNF449 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7838134765625 2 503.782025 1005.5495 -0.094552 -4.7634E-05 0.99686 0.0005022 0.9023 0.00045456 503.78300955689167 37.296 0.18059 37.317 37.195 37.375 0.021545 13 7 2 0 0 0 0.64853 1 19809 19809 21.747 1.293 1 1457700 36939 8310 24518 25005 43553 43553 0.04694340585979262 LQKFDCAQWV 10 Unmodified _LQKFDCAQWV_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2060852050781 3 413.205986 1236.59613 NaN NaN NaN NaN NaN NaN NaN 39.778 1 39.481 38.981 39.981 -0.29716 0 0 0 0.97592 1 20998 20998 1.5923 0 1 + 36940 22687 24519 25006 43554 43554 -0.012705428543995367 LQKKCKLRVIL 11 Unmodified _LQKKCKLRVIL_ 0 0 0 ENST00000509018.5_1_5:130762591-130762705:-|nuORF ENST00000509018.5_1_5:130762591-130762705:-|nuORF ENST00000509018.5_1_5:130762591-130762705:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.44189453125 2 671.441775 1340.869 NaN NaN NaN NaN NaN NaN NaN 104.19 1 104.14 103.64 104.64 -0.048737 0 0 0 0.94307 1 57848 57848 0.30703 0.03801 1 36941 14573 24520 25007 43555 43555 0.21219685606683925 LQKKRKKRKHL 11 Unmodified _LQKKRKKRKHL_ 0 0 0 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 MSMS AL20221201_MKP_PDAC_01 4 488.3331604003906 3 488.331683 1461.97322 NaN NaN NaN NaN NaN NaN NaN 107.72 1 101.54 101.04 102.04 -6.1757 0 0 0 0.9435 1 72027 72027 0 0 1 36942 10300 24521 25008 43556 43556 0.26071148478399664 LQKKRKKRKHL 11 Unmodified _LQKKRKKRKHL_ 0 0 0 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 MSMS AL20221201_MKP_PDAC_01 4 488.3337097167969 3 488.331683 1461.97322 NaN NaN NaN NaN NaN NaN NaN 107.91 1 101.73 101.23 102.23 -6.1757 0 0 0 0.9435 1 72143 72143 0 0 1 36943 10300 24521 25008 43557 43557 0.26071148478399664 LQKKRNYDSWR 11 Unmodified _LQKKRNYDSWR_ 0 0 0 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 REV__nc|ENSG00000172752|A8TX70-2|COL6A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.6040954589844 3 498.603908 1492.78989 NaN NaN NaN NaN NaN NaN NaN 16.805 1 16.811 16.311 17.311 0.0050564 0 0 0 0.94337 1 8443 8443 0.094841 0 1 + 36944 22671 24522 25009 43558 43558 0.06321129906064016 LQKLKKAH 8 Unmodified _LQKLKKAH_ 0 0 0 REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF REV__ENST00000488347.5_1_X:101149758-101186981:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.3155212402344 2 483.316369 964.618185 1.6383 0.00079182 -2.4306 -0.0011747 -0.79229 -0.00038292 483.3147201265874 104.36 0.16711 98.186 98.052 98.219 -6.1757 35 25 2 0 0 0 0.80992 1 69872 69872 0.69038 0 1 5617600 + 36945 22117 24523 25010 43559 43559 0.13446049676349503 LQKLKKWL 8 Unmodified _LQKLKKWL_ 0 0 0 REV__ENST00000484907.1_1_13:115022698-115027365:+|nuORF REV__ENST00000484907.1_1_13:115022698-115027365:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.355224609375 2 528.850045 1055.68554 1.5844 0.00083791 0.34338 0.0001816 1.9278 0.0010195 529.3540133118574 104.05 0.071854 97.878 97.856 97.928 -6.1757 30 21 2 0 0 0 8.7369 1 69738 69738 0.69038 0 1 5952800 + 36946 27767 24524 25011 43560 43560 0.15992079887314503 LQKPLDPTI 9 Unmodified _LQKPLDPTI_ 0 0 0 nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2630004882812 2 512.8055 1023.59645 1.1275 0.00057821 -0.52894 -0.00027124 0.5986 0.00030697 512.8050864183691 95.967 0.24731 89.791 89.66 89.907 -6.1757 33 14 3 0 0 0 0.209 1 63649 63649 7.2892 3.3448 1 37214000 36947 9055 24525 25012 43561 43561 0.0855920013711966 LQKPNHVF 8 Unmodified _LQKPNHVF_ 0 0 0 ENST00000507668.6_1_5:79436329-79436551:-|nuORF ENST00000507668.6_1_5:79436329-79436551:-|nuORF ENST00000507668.6_1_5:79436329-79436551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7783813476562 2 491.777077 981.5396 0.93062 0.00045766 1.3338 0.00065595 2.2645 0.0011136 491.77761709940967 71.725 0.37911 71.764 71.535 71.914 0.039024 48 17 4 0 0 0 0.80143 1 39446 39446 5.7604 0.52976 1 11080000 36948 14543 24526 25013 43562 43562 0.04809197371275786 LQKQRPELL 9 Unmodified _LQKQRPELL_ 0 0 0 REV__nc|ENSG00000070601|Q5SYB0-2|FRMPD1 REV__nc|ENSG00000070601|Q5SYB0-2|FRMPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.56494140625 3 375.564391 1123.67134 1.427 0.00053592 -0.93561 -0.00035138 0.49137 0.00018454 375.56400131659854 38.154 0.38213 33.785 33.597 33.98 -4.3689 51 22 3 0 0 0 0.2324 1 22528 22528 20.415 0 1 19530000 + 36949 17474 24527 25014 43563 43563 0.11445382668375714 LQKRALVIATT 11 Unmodified _LQKRALVIATT_ 0 0 0 REV__ENSG00000197140|ENST00000379907|ADAM32 REV__ENSG00000197140|ENST00000379907|ADAM32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2586059570312 3 405.259079 1212.75541 NaN NaN NaN NaN NaN NaN NaN 94.927 1 94.559 94.059 95.059 -0.36814 0 0 0 0.94338 1 51855 51855 0.08335 0 1 + 36950 23900 24528 25015 43564 43564 0.15753913765252037 LQKRERFLLER 11 Unmodified _LQKRERFLLER_ 0 0 0 nc|ENSG00000163006|Q96M89-2|CCDC138;ENSG00000163006|ENST00000295124|CCDC138 nc|ENSG00000163006|Q96M89-2|CCDC138 nc|ENSG00000163006|Q96M89-2|CCDC138 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.9763488769531 4 372.725584 1486.87323 0.14145 5.2724E-05 -0.46284 -0.00017251 -0.32138 -0.00011979 372.7254419541593 23.576 0.37463 23.597 23.37 23.744 0.021185 60 17 5 0 0 0 0.6889 2 12074 12074;12170 2.4348 1.22 1 59979000 36951 6940 24529 25016 43565;43566 43565 0.14926866353926016 LQKRERFLLER 11 Unmodified _LQKRERFLLER_ 0 0 0 nc|ENSG00000163006|Q96M89-2|CCDC138;ENSG00000163006|ENST00000295124|CCDC138 nc|ENSG00000163006|Q96M89-2|CCDC138 nc|ENSG00000163006|Q96M89-2|CCDC138 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.6317138671875 3 496.631687 1486.87323 0.3133 0.00015559 -0.34718 -0.00017242 -0.03388 -1.6826E-05 496.6314739351412 23.579 0.27819 23.6 23.419 23.697 0.021185 30 13 3 0 0 0 0.71618 1 12092 12092 2.4348 1.9803 1 15474000 36952 6940 24529 25016 43567 43567 0.14926866353926016 LQKRQLKTV 9 Unmodified _LQKRQLKTV_ 0 0 0 ENST00000217246.8_1_20:15913977-15948236:+|nuORF ENST00000217246.8_1_20:15913977-15948236:+|nuORF ENST00000217246.8_1_20:15913977-15948236:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.9091796875 3 371.908269 1112.70298 1.7878 0.00066488 -1.9741 -0.00073419 -0.18637 -6.9311E-05 371.90785982445567 37.613 0.27537 33.244 33.144 33.419 -4.3689 23 16 2 0 0 0 0.13231 1 22112 22112 29.841 0.40343 1 11232000 36953 11018 24530 25017 43568 43568 0.15113375422311037 LQKRRLLREY 10 Unmodified _LQKRRLLREY_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.9195556640625 2 687.920052 1373.82555 1.5412 0.0010602 -0.50205 -0.00034537 1.0392 0.00071486 688.42124156818 105.64 0.33593 99.469 99.359 99.695 -6.1757 50 28 2 0 0 0 0.71413 1 70758 70758 1.3295 0 1 11322000 + 36954 29516 24531 25018 43569 43569 0.1535921215372582 LQKRRWWYSFV 11 Unmodified _LQKRRWWYSFV_ 0 0 0 REV__nc|ENSG00000164078|Q04912-7|MST1R REV__nc|ENSG00000164078|Q04912-7|MST1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.9268798828125 2 784.927877 1567.8412 0.52895 0.00041519 -0.76227 -0.00059833 -0.23333 -0.00018314 784.9273619965342 78.415 0.39902 78.467 78.226 78.625 0.052444 45 16 4 0 0 0 0.71036 1 43267 43267 3.2813 0.78282 1 9904500 + 36955 21862 24532 25019 43570 43570 0.07999498670756111 LQLDGRAG 8 Unmodified _LQLDGRAG_ 0 0 0 REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF REV__ENST00000517894.5_3_8:143530803-143545560:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2287292480469 2 415.229959 828.445365 -0.25579 -0.00010621 -0.035848 -1.4885E-05 -0.29164 -0.0001211 415.22994691223386 21.322 0.17886 21.35 21.283 21.462 0.028355 9 8 2 0 0 0 0.78031 1 10824 10824 10.074 0 1 534470 + 36956 28234 24533 25020 43571 43571 0.024280585491396778 LQLEQEAESF 10 Unmodified _LQLEQEAESF_ 0 0 0 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 MSMS AL20221201_MKP_PDAC_01 4 597.2825927734375 2 597.287868 1192.56118 NaN NaN NaN NaN NaN NaN NaN 101.88 1 95.708 95.208 96.208 -6.1757 0 0 0 0.78298 1 68387 68387 13.042 4.8869 1 36957 5628 24534 25021 43572 43572 -0.027395071813316463 LQLESVIGLL 10 Unmodified _LQLESVIGLL_ 0 0 0 REV__nc|ENSG00000123240|Q96CV9-3|OPTN REV__nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8344116210938 2 542.834257 1083.65396 -0.12969 -7.0401E-05 -0.018617 -1.0106E-05 -0.14831 -8.0508E-05 542.8341218991769 70.19 0.32394 69.711 69.568 69.892 -0.47903 48 17 4 0 0 0 0.1028 1 38441 38441 46.021 2.1627 1 15467000 + 36958 19378 24535 25022 43573 43573 0.1154804234272433 LQLFLSANQI 10 Unmodified _LQLFLSANQI_ 0 0 0 REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.829833984375 2 573.829506 1145.64446 0.77907 0.00044706 0.14659 8.4117E-05 0.92566 0.00053117 573.8292195416078 71.635 0.29787 71.674 71.511 71.809 0.039024 31 12 3 0 0 0 0.036372 1 39411 39411 85.642 6.9135 1 4807200 + 36959 28582 24536 25023 43574 43574 0.07746274057171831 LQLFLSANQI 10 Unmodified _LQLFLSANQI_ 0 0 0 REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.829506 1145.64446 0.73416 0.00042128 0.12883 7.3924E-05 0.86298 0.00049521 573.8292541647962 72.138 0.22666 71.662 71.525 71.752 -0.47609 -0.006058 -9.3675E-06 NaN 85.642 18 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1441900 + 36960 28582 24536 25023 0.07746274057171831 LQLFLSANQI 10 Unmodified _LQLFLSANQI_ 0 0 0 REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF REV__ENST00000540470.5_1_13:43544616-43566301:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 573.829506 1145.64446 0.77907 0.00044706 0.14659 8.4117E-05 0.92566 0.00053117 573.8292195416078 71.635 0.29787 71.674 71.511 71.809 0.039024 0.006058 1.1019E-05 NaN 85.642 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4807200 + 36961 28582 24536 25023 0.07746274057171831 LQLHDLKRE 9 Unmodified _LQLHDLKRE_ 0 0 0 nc|ENSG00000076706|P43121-2|MCAM;ENST00000528533.5_1_11:119181936-119187838:-|nuORF;ENSG00000076706|ENST00000264036|MCAM nc|ENSG00000076706|P43121-2|MCAM nc|ENSG00000076706|P43121-2|MCAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5559692382812 3 384.555895 1150.64586 NaN NaN NaN NaN NaN NaN NaN 19.2 1 19.223 18.723 19.723 0.023106 0 0 0 0.84564 1 9668 9668 1.0715 0 1 36962 1192 24537 25024 43575 43575 0.0765590814596635 LQLPRRVL 8 Unmodified _LQLPRRVL_ 0 0 0 REV__ENSG00000232859|ENST00000379102|LYRM9 REV__ENSG00000232859|ENST00000379102|LYRM9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8297424316406 2 497.829643 993.644734 0.50267 0.00025024 0.37224 0.00018531 0.87491 0.00043556 497.8297539605686 52.075 0.333 52.016 51.835 52.168 -0.058918 35 15 3 0 0 0 0.67481 1 28261 28261 19.439 2.4967 1 14321000 + 36963 24412 24538 25025 43576 43576 0.14765738567689368 LQLRLGSHWR 10 Unmodified _LQLRLGSHWR_ 0 0 0 REV__ENST00000429300.5_1_22:18905996-18910521:-|nuORF REV__ENST00000429300.5_1_22:18905996-18910521:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.5805053710938 3 422.579034 1264.71527 NaN NaN NaN NaN NaN NaN NaN 66.708 1 66.224 65.724 66.724 -0.48323 0 0 0 0.98857 1 36433 36433 1.9064 0 1 + 36964 26949 24539 25026 43577 43577 0.09350411885361609 LQLTAAFFL 9 Unmodified _LQLTAAFFL_ 0 0 0 ENSG00000176087|ENST00000323146|SLC35A4 ENSG00000176087|ENST00000323146|SLC35A4 ENSG00000176087|ENST00000323146|SLC35A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2757568359375 2 512.29731 1022.58007 0.05725 2.9329E-05 0.60949 0.00031224 0.66674 0.00034157 512.2977156361904 61.74 0.26923 61.253 61.097 61.366 -0.48764 28 12 3 0 0 0 0.16785 1 33600 33600 23.148 0 1 3246500 36965 8563 24540 25027 43578 43578 0.0696811897103089 LQMWFIHTL 9 Unmodified _LQMWFIHTL_ 0 0 0 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8139038085938 2 594.815344 1187.61614 0.67397 0.00040089 -2.2015 -0.0013095 -1.5275 -0.00090861 594.8136706829192 100.49 0.23322 94.312 94.141 94.374 -6.1757 33 14 3 0 0 0 0.07916 1 67142 67142 37.974 0 1 188520000 36966 9013 24541 25028 43579 43579 0.02983252876242659 LQNHVFPLF 9 Unmodified _LQNHVFPLF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8057861328125 2 557.805834 1113.59712 1.1907 0.00066419 -0.56281 -0.00031394 0.62791 0.00035025 557.8054254297583 79.779 0.28733 79.29 79.141 79.428 -0.48932 22 12 2 0 0 0 0.2324 1 43672 43672 21.747 9.2151 1 1543300 36967 10362 24542 25029 43580 43580 0.04486039576818257 LQNHVFPLF 9 Unmodified _LQNHVFPLF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.805908203125 2 557.805834 1113.59712 0.62083 0.0003463 -0.050364 -2.8093E-05 0.57046 0.00031821 557.8056945883725 79.176 0.71141 79.231 78.913 79.625 0.05497 90 27 6 0 0 0 0.032796 2 43783 43676;43783 50.855 12.302 1 82393000 36968 10362 24542 25029 43581;43582 43582 0.04486039576818257 LQNHVFPLF 9 Unmodified _LQNHVFPLF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8062744140625 2 557.805834 1113.59712 1.6085 0.00089725 0.44597 0.00024876 2.0545 0.001146 557.8058910708114 97.459 0.37961 91.283 91.062 91.441 -6.1757 69 20 5 0 0 0 0.036857 2 64513 64513;64628 57.471 13.064 1 403990000 36969 10362 24542 25029 43583;43584 43583 0.04486039576818257 LQNRLLFHL 9 Unmodified _LQNRLLFHL_ 0 0 0 ENST00000481482.5_1_7:138818528-138853308:+|nuORF;nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26 ENST00000481482.5_1_7:138818528-138853308:+|nuORF ENST00000481482.5_1_7:138818528-138853308:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2328491210938 3 385.232864 1152.67676 NaN NaN NaN NaN NaN NaN NaN 70.49 1 70.526 70.026 71.026 0.035515 0 0 0 0.85261 1 38800 38800 1.1933 0 1 36970 2380 24543 25030 43585 43585 0.10653106250856581 LQNWKFWI 8 Unmodified _LQNWKFWI_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.806640625 2 567.808377 1133.6022 NaN NaN NaN NaN NaN NaN NaN 77.254 1 76.771 76.271 77.271 -0.4826 0 0 0 0.97444 1 42291 42291 2.5775 0 1 36971 8538 24544 25031 43586 43586 0.04074343439469885 LQPADLPSP 9 Unmodified _LQPADLPSP_ 0 0 0 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 REV__nc|ENSG00000091592|Q9C000-3|NLRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.499755859375 1 937.498923 936.491647 0.13294 0.00012463 0.50031 0.00046904 0.63325 0.00059367 937.4992815155098 64.01 0.49846 64.01 63.756 64.255 0 34 20 2 0 0 0 0.23158 1 35724 35724 20.454 0 1 778560 + 36972 17895 24545 25032 43587 43587 0.0208607866057946 LQPDAPLWVRF 11 Unmodified _LQPDAPLWVRF_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3682861328125 2 671.36933 1340.72411 1.2458 0.00083641 1.0013 0.00067222 2.2471 0.0015086 671.3703483873998 97.42 0.16151 91.245 91.17 91.332 -6.1757 13 8 2 0 0 0 0.020907 1 64599 64599 70.332 35.4 1 7226200 36973 7661 24546 25033 43588 43588 0.06737340731160657 LQPDTLKSF 9 Unmodified _LQPDTLKSF_ 0 0 0 ENST00000272462.2_1_2:110841508-110841715:-|nuORF ENST00000272462.2_1_2:110841508-110841715:-|nuORF ENST00000272462.2_1_2:110841508-110841715:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7892456054688 2 524.787307 1047.56006 1.2145 0.00063736 0.054884 2.8802E-05 1.2694 0.00066616 524.7871963397516 59.192 0.60111 53.117 52.851 53.452 -6.0745 106 33 4 0 0 0 0.50598 1 38137 38137 10.824 0 1 516610000 36974 11371 24547 25034 43589 43589 0.03818323240443533 LQPERYELW 9 Unmodified _LQPERYELW_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3161010742188 2 617.316763 1232.61897 0.25311 0.00015625 -0.58802 -0.000363 -0.33492 -0.00020675 617.8182051544621 60.106 0.27648 59.616 59.45 59.726 -0.49079 28 13 3 0 0 0 0.078314 1 32682 32682 38.176 17.722 1 8748800 36975 4024 24548 25035 43590 43590 0.011967995347504257 LQPERYELW 9 Unmodified _LQPERYELW_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 617.316763 1232.61897 0.58447 0.00036081 -0.57878 -0.00035729 0.0056926 3.5141E-06 617.8180700468381 59.557 0.1588 59.557 59.443 59.602 0 0.10049 0.00026356 NaN 38.176 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 674080 36976 4024 24548 25035 0.011967995347504257 LQPERYELW 9 Unmodified _LQPERYELW_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 617.316763 1232.61897 0.24771 0.00015292 -2.2895 -0.0014133 -2.0418 -0.0012604 617.3141089458453 65.372 0.56411 59.196 58.897 59.461 -6.1757 -0.25986 -0.0018485 NaN 38.176 49 31 2 NaN NaN NaN NaN 0 NaN NaN 0 28061000 36977 4024 24548 25035 0.011967995347504257 LQPFIYYRF 9 Unmodified _LQPFIYYRF_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.8351440429688 2 623.834591 1245.65463 0.54394 0.00033933 -0.59455 -0.0003709 -0.050604 -3.1569E-05 623.8342057333186 79.129 0.29553 79.184 79.015 79.31 0.054977 29 11 3 0 0 0 0.019303 1 43667 43667 64.236 40.216 1 9151200 36978 2634 24549 25036 43591 43591 0.041628817823720965 LQPFIYYRF 9 Unmodified _LQPFIYYRF_ 0 0 0 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.8359375 2 623.834591 1245.65463 1.0301 0.00064259 0.38174 0.00023814 1.4118 0.00088073 623.8348330299517 94.409 0.5157 88.233 87.947 88.463 -6.1757 68 29 3 0 0 0 0.031062 2 62421 62421;62540 54.774 30.984 1 30517000 36979 2634 24549 25036 43592;43593 43592 0.041628817823720965 LQPGLFHHL 9 Unmodified _LQPGLFHHL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000503519.1_1_1:202194560-202205122:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.5346984863281 3 354.534543 1060.5818 0.28986 0.00010277 0.89044 0.00031569 1.1803 0.00041846 354.53486513242757 45.959 0.30403 45.931 45.782 46.086 -0.028011 27 13 3 0 0 0 0.37804 1 24761 24761 13.042 4.2971 1 3786000 36980 4485 24550 25037 43594 43594 0.05393172779645283 LQPHPELRL 9 Unmodified _LQPHPELRL_ 0 0 0 REV__chr3:32974686-33014056|37|15.76|0.96|4.04|-|0|TE_info:MLT2B4,MLT2B4_dup748,ERVL,LTR,acceptor,-,32974518,32974686|None,GLB1|2 REV__chr3:32974686-33014056|37|15.76|0.96|4.04|-|0|TE_info:MLT2B4,MLT2B4_dup748,ERVL,LTR,acceptor,-,32974518,32974686|None,GLB1|2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8212890625 2 551.822015 1101.62948 0.3321 0.00018326 -1.156 -0.00063793 -0.82394 -0.00045467 551.8209921235219 61.031 0.25899 60.987 60.845 61.104 -0.043507 19 12 2 0 0 0 0.25681 1 33330 33330 19.257 1.1106 1 3070400 + 36981 16809 24551 25038 43595 43595 0.08272826979828096 LQPKMLHLL 9 Unmodified _LQPKMLHLL_ 0 0 0 REV__ENST00000472129.3_1_17:57733314-57733365:+|nuORF REV__ENST00000472129.3_1_17:57733314-57733365:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8928527832031 3 364.89145 1091.65252 NaN NaN NaN NaN NaN NaN NaN 26.339 1 26.366 25.866 26.866 0.026951 0 0 0 0.83812 1 13660 13660 2.9952 0.26005 1 + 36982 27512 24552 25039 43596 43596 0.11036129772969616 LQPKQFPFL 9 Unmodified _LQPKQFPFL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.32421875 2 559.32386 1116.63317 0.59324 0.00033181 1.5135 0.00084655 2.1068 0.0011784 559.3247042083727 73.445 0.38026 73.489 73.292 73.672 0.043983 48 16 4 0 0 0 0.03327 2 40424 40424;40520 53.576 28.902 1 7689200 36983 983 24553 25040 43597;43598 43597 0.07951496753685205 LQPLKRVGPG 10 Unmodified _LQPLKRVGPG_ 0 0 0 REV__ENST00000557892.1_1_15:49907254-49907386:-|nuORF REV__ENST00000557892.1_1_15:49907254-49907386:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2969970703125 2 532.832383 1063.65021 -0.033958 -1.8094E-05 1.0966 0.00058429 1.0626 0.0005662 532.8330028642473 30.102 0.33419 30.132 29.921 30.255 0.030106 22 13 2 0 0 0 0.23693 1 15678 15678 6.2058 2.6093 1 1702600 + 36984 28795 24554 25041 43599 43599 0.1209341735950602 LQPLLGTQLV 10 Unmodified _LQPLLGTQLV_ 0 0 0 ENST00000600466.1_1_19:50306521-50306755:+|nuORF ENST00000600466.1_1_19:50306521-50306755:+|nuORF ENST00000600466.1_1_19:50306521-50306755:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.560791015625 3 361.225375 1080.6543 -0.010508 -3.7956E-06 1.1723 0.00042348 1.1618 0.00041968 361.2252916337829 34.767 0.80976 34.795 34.163 34.973 0.027401 48 37 2 0 0 0 0.70895 1 18440 18440 1.9064 0.71303 1 4715900 36985 15798 24555 25042 43600 43600 0.11719462062569619 LQPLLKKM 8 Unmodified _LQPLLKKM_ 0 0 0 REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.8115539550781 2 485.809531 969.604509 0.99353 0.00048267 2.683 0.0013034 3.6765 0.0017861 485.8107991556572 38.133 0.25791 33.764 33.597 33.855 -4.3689 18 14 2 0 0 0 0.74163 1 22473 22473 13.508 0 1 7219000 + 36986 28554 24556 25043 43601 43601 0.11849055852917445 LQPLLKKM 8 Unmodified _LQPLLKKM_ 0 0 0 REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 485.809531 969.604509 0.99353 0.00048267 2.683 0.0013034 3.6765 0.0017861 485.8107991556572 38.133 0.25791 33.764 33.597 33.855 -4.3689 -0.14152 -0.00049508 NaN 13.508 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 7219000 + 36987 28554 24556 25043 0.11849055852917445 LQPQLSIFI 9 Unmodified _LQPQLSIFI_ 0 0 0 REV__ENSG00000132952|ENST00000255304|USPL1 REV__ENSG00000132952|ENST00000255304|USPL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2632446289062 2 529.815867 1057.61718 3.4948 0.0018516 -0.68058 -0.00036058 2.8142 0.001491 529.815580622162 99.524 0.10177 99.487 99.427 99.529 -0.036301 6 3 2 0 0 0 0.15672 1 55269 55269 26.884 3.7352 1 1007200 + 36988 19893 24557 25044 43602 43602 0.09067790516814966 LQPQPQPQQI 10 Unmodified _LQPQPQPQQI_ 0 0 0 ENSG00000223611|ENST00000486479|SUPT20HL2 ENSG00000223611|ENST00000486479|SUPT20HL2 ENSG00000223611|ENST00000486479|SUPT20HL2 MSMS AL20221201_MKP_PDAC_01 4 588.818603515625 2 588.822212 1175.62987 NaN NaN NaN NaN NaN NaN NaN 54.87 1 49.004 48.504 49.504 -5.8653 0 0 0 0.16751 1 34856 34856 30.637 0 1 36989 10573 24558 25045 43603 43603 0.04908201909051968 LQPQRSPQI 9 Unmodified _LQPQRSPQI_ 0 0 0 REV__nc|ENSG00000255568|P59051|BRWD1-AS2 REV__nc|ENSG00000255568|P59051|BRWD1-AS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.2844848632812 2 533.803823 1065.59309 0.78044 0.0004166 -0.23726 -0.00012665 0.54317 0.00028995 533.8033862547616 39.087 0.20127 34.636 34.488 34.689 -4.4509 18 12 2 0 0 0 0.12771 1 23156 23156 34.402 0 1 15098000 + 36990 29272 24559 25046 43604 43604 0.06291950083118536 LQPSFPHLSL 10 Unmodified _LQPSFPHLSL_ 0 0 0 ENST00000461430.1_1_3:168838784-168840415:-|nuORF ENST00000461430.1_1_3:168838784-168840415:-|nuORF ENST00000461430.1_1_3:168838784-168840415:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.2141723632812 3 380.213358 1137.61824 NaN NaN NaN NaN NaN NaN NaN 109.88 1 103.7 103.2 104.2 -6.1757 0 0 0 0.99248 1 73356 73356 0.62683 0 1 36991 13661 24560 25047 43605 43605 0.05494004885713366 LQPWLWLF 8 Unmodified _LQPWLWLF_ 0 0 0 REV__ENST00000443739.6_1_7:143052905-143053253:-|nuORF REV__ENST00000443739.6_1_7:143052905-143053253:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.8073120117188 2 551.807845 1101.60114 NaN NaN NaN NaN NaN NaN NaN 38.076 1 33.707 33.207 34.207 -4.3689 0 0 0 0.9489 1 22417 22417 9.3474 0.75416 1 + 36992 27116 24561 25048 43606 43606 0.05440129070552757 LQPWPVDVK 9 Unmodified _LQPWPVDVK_ 0 0 0 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1940612792969 3 361.206203 1080.59678 NaN NaN NaN NaN NaN NaN NaN 21.905 1 21.928 21.428 22.428 0.022896 0 0 0 0.85852 1 11130 11130 0.20686 0 1 36993 5916 24562 25049 43607 43607 0.05970619856975645 LQQKLVDHL 9 Unmodified _LQQKLVDHL_ 0 0 0 REV__ENSG00000105072|ENST00000221671|C19orf44 REV__ENSG00000105072|ENST00000221671|C19orf44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5258483886719 3 365.216991 1092.62914 1.7973 0.00065642 -0.77907 -0.00028453 1.0183 0.00037189 365.54991931724686 49.494 0.18629 44.098 43.973 44.16 -5.3961 13 11 2 0 0 0 0.41742 1 30866 30866 7.609 0 1 22935000 + 36994 18397 24563 25050 43608 43608 0.0865340725997612 LQQLRFRLPRS 11 Unmodified _LQQLRFRLPRS_ 0 0 0 REV__ENST00000467473.5_1_17:19551570-19555957:+|nuORF REV__ENST00000467473.5_1_17:19551570-19555957:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.9551086425781 3 471.95276 1412.83645 1.0748 0.00050724 2.1671 0.0010228 3.2419 0.00153 472.28711930138604 20.178 0.54116 17.522 17.257 17.798 -2.6564 47 34 2 0 0 0 0.73349 1 10708 10708 1.1098 0.6038 1 2365600 + 36995 17511 24564 25051 43609 43609 0.14654614528012644 LQQPEVVQMA 10 Unmodified _LQQPEVVQMA_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2;ENST00000474585.1_1_3:45583301-45589019:+|nuORF ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.79833984375 2 571.797349 1141.58014 0.032156 1.8387E-05 1.4092 0.00080577 1.4413 0.00082415 571.7980782959914 72.687 0.54276 72.729 72.378 72.921 0.041725 70 25 3 0 0 0 0.56348 1 40020 40020 13.042 0 1 39622000 36996 444 24565 25052 43610 43610 0.015017509087329017 LQQQQLLQL 9 Unmodified _LQQQQLLQL_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;ENST00000498156.5_1_9:130948054-130953136:-|nuORF;ENST00000467178.5_1_9:130943037-130953136:-|nuORF;ENST00000488559.6_1_9:130943037-130953136:-|nuORF nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3296508789062 2 556.327131 1110.63971 1.5147 0.00084269 0.50364 0.00028019 2.0184 0.0011229 556.3275338993682 58.601 0.26186 52.526 52.387 52.649 -6.0745 23 14 2 0 0 0 0.012148 1 37574 37574 74.423 3.7072 1 11532000 36997 5919 24566 25053 43611 43611 0.08881389914427018 LQQSCFRF 8 Unmodified _LQQSCFRF_ 0 0 0 REV__nc|ENSG00000205336|Q9Y653-4|ADGRG1 REV__nc|ENSG00000205336|Q9Y653-4|ADGRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7547607421875 2 514.752744 1027.49094 0.37114 0.00019105 1.339 0.00068927 1.7102 0.00088031 514.7535042963758 90.795 0.51251 90.3 90.074 90.586 -0.49458 90 34 3 0 0 0 0.80311 1 49749 49749 4.756 0.42677 1 11461000 + 36998 29914 24567 25054 43612 43612 -0.021710392601335116 LQRAGYYCCY 10 Unmodified _LQRAGYYCCY_ 0 0 0 REV__ENST00000492406.5_1_3:112280909-112281080:+|nuORF REV__ENST00000492406.5_1_3:112280909-112281080:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.2684936523438 2 620.267901 1238.52125 1.0412 0.00064581 -0.21085 -0.00013079 0.83033 0.00051503 620.2677924784115 54.429 0.32692 54.429 54.271 54.597 0 25 14 2 0 0 0 0.6606 1 30210 30210 7.2892 0.56607 1 6189400 + 36999 27899 24568 25055 43613 43613 -0.08847048657253254 LQRCRANTVL 10 Unmodified _LQRCRANTVL_ 0 0 0 ENSG00000131873|ENST00000254190|CHSY1;ENST00000543813.1_1_15:101717595-101728206:-|nuORF ENSG00000131873|ENST00000254190|CHSY1 ENSG00000131873|ENST00000254190|CHSY1 MSMS AL20221201_MKP_PDAC_01 4 391.8887329101562 3 391.88888 1172.64481 NaN NaN NaN NaN NaN NaN NaN 80.402 1 74.227 73.727 74.727 -6.1757 0 0 0 0.83398 1 52752 52752 6.1918 0.78914 1 37000 4357 24569 25056 43614 43614 0.06539370505379338 LQREPSQL 8 Unmodified _LQREPSQL_ 0 0 0 ENST00000543080.1_1_12:109613818-109617755:+|nuORF ENST00000543080.1_1_12:109613818-109617755:+|nuORF ENST00000543080.1_1_12:109613818-109617755:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7700805664062 2 485.769448 969.524344 0.56424 0.00027409 0.29197 0.00014183 0.85621 0.00041592 485.7695602059079 38.568 0.31113 38.568 38.414 38.725 0 27 15 2 0 0 0 0.40602 1 20594 20594 43.858 3.6191 1 2735800 37001 15066 24570 25057 43615 43615 0.03836285783427229 LQREVIEL 8 Unmodified _LQREVIEL_ 0 0 0 REV__nc|ENSG00000151239|Q12792-4|TWF1 REV__nc|ENSG00000151239|Q12792-4|TWF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2955932617188 2 500.295299 998.576045 0.10685 5.3456E-05 0.55064 0.00027548 0.65749 0.00032894 500.2955385227741 48.94 0.32714 48.568 48.407 48.734 -0.37172 30 16 2 0 0 0 0.56356 1 26362 26362 29.082 1.4528 1 10144000 + 37002 21058 24571 25058 43616 43616 0.07670029477310436 LQRFGPPP 8 Unmodified _LQRFGPPP_ 0 0 0 ENST00000589175.1_1_19:36231817-36232081:-|nuORF;nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1 ENST00000589175.1_1_19:36231817-36232081:-|nuORF ENST00000589175.1_1_19:36231817-36232081:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2590026855469 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 22.146 1 22.146 21.646 22.646 0 0 0 0 0.97348 1 11254 11254 5.7604 0 1 37003 3936 24572 25059 43617 43617 0.04365525825517125 LQRFSHLGL 9 Unmodified _LQRFSHLGL_ 0 0 0 ENST00000428883.5_1_2:233562086-233599877:+|nuORF ENST00000428883.5_1_2:233562086-233599877:+|nuORF ENST00000428883.5_1_2:233562086-233599877:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8094482421875 2 535.808908 1069.60326 0.077057 4.1288E-05 0.21435 0.00011485 0.29141 0.00015614 535.8084818023829 38.264 0.18521 38.281 38.151 38.336 0.017036 10 7 2 0 0 0 0.16226 1 20347 20347 26.884 0 1 1896600 37004 13214 24573 25060 43618 43618 0.07124557808378995 LQRGREEQ 8 Unmodified _LQRGREEQ_ 0 0 0 ENST00000521049.5_1_8:71510241-71520545:-|nuORF ENST00000521049.5_1_8:71510241-71520545:-|nuORF ENST00000521049.5_1_8:71510241-71520545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2532043457031 2 508.267604 1014.52066 -0.24542 -0.00012474 2.2252 0.001131 1.9798 0.0010062 508.2692898109309 25.699 0.36134 22.748 22.594 22.955 -2.9511 40 22 2 0 0 0 0.6895 1 14090 14090 18.135 3.2967 1 12200000 37005 14739 24574 25061 43619 43619 0.01397616009558078 LQRIAQLQL 9 Unmodified _LQRIAQLQL_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.7532348632812 2 541.837665 1081.66078 1.0141 0.00054949 0.42013 0.00022764 1.4343 0.00077713 541.8380967530636 21.674 0.17136 18.939 18.9 19.072 -2.7348 10 8 2 0 0 0 0.18094 1 11617 11617 10.824 3.5347 1 1020300 37006 1720 24575 25062 43620 43620 0.1232140001393418 LQRPFEEK 8 Unmodified _LQRPFEEK_ 0 0 0 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant;ENSG00000182261|ENST00000691676|NLRP10 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7853393554688 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 15.519 1 15.519 15.019 16.019 0 0 0 0 0.97444 1 7482 7482 2.3027 0 1 37007 9039 24576 25063 43621 43621 0.03468858817495857 LQRPGAKTPYL 11 Unmodified _LQRPGAKTPYL_ 0 0 0 REV__ENSG00000159495|ENST00000452443|TGM7 REV__ENSG00000159495|ENST00000452443|TGM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2424926757812 3 415.243429 1242.70846 -0.20023 -8.3143E-05 -0.2185 -9.0732E-05 -0.41873 -0.00017388 415.2433130221247 37.646 1.1282 37.664 37.416 38.544 0.01704 163 53 6 0 0 0 0.57006 2 19906 19906;20232 12.856 6.6641 1 514940000 + 37008 21486 24577 25064 43622;43623 43622 0.09681054214138385 LQRQERLRLKQ 11 Unmodified _LQRQERLRLKQ_ 0 0 0 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 ENSG00000090432|ENST00000264198|MUL1 MSMS AL20221201_MKP_PDAC_01 4 489.966064453125 3 489.967069 1466.87938 NaN NaN NaN NaN NaN NaN NaN 8.3793 1 5.8973 5.3973 6.3973 -2.482 0 0 0 0.94337 1 4230 4230 0.094841 0 1 37009 1557 24578 25065 43624 43624 0.16461384585431915 LQRQGRAGRVR 11 Unmodified _LQRQGRAGRVR_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54566383-54570502:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.8916625976562 2 648.889618 1295.76468 0.14503 9.4111E-05 2.2188 0.0014398 2.3639 0.0015339 648.8911753124167 30.396 0.21924 30.427 30.3 30.519 0.030106 14 9 2 0 0 0 0.6889 1 15886 15886 5.2969 2.3016 1 1469800 37010 955 24579 25066 43625 43625 0.12863119894154806 LQRQQQLRL 9 Unmodified _LQRQQQLRL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9075317382812 3 394.907039 1181.69929 -0.086969 -3.4345E-05 0.87799 0.00034672 0.79102 0.00031238 394.90724415664124 15.246 0.11876 15.252 15.185 15.303 0.0057774 9 5 2 0 0 0 0.2143 1 7589 7589 20.415 4.2654 1 1855600 + 37011 21645 24580 25067 43626 43626 0.1157070564845526 LQRQQQLRL 9 Unmodified _LQRQQQLRL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9072265625 3 394.907039 1181.69929 0.36342 0.00014352 -0.19416 -7.6675E-05 0.16926 6.6841E-05 394.90696310711564 15.99 0.32373 13.433 13.285 13.608 -2.557 190 61 4 0 0 0 0.32871 1 8201 8201 10.8 1.2555 1 76677000 + 37012 21645 24580 25067 43627 43627 0.1157070564845526 LQRQQQLRL 9 Unmodified _LQRQQQLRL_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 394.907039 1181.69929 -0.53397 -0.00021087 0.70783 0.00027953 0.17386 6.8658E-05 394.9073628494193 15.415 0.096265 15.401 15.355 15.451 -0.014067 0.072069 2.5979E-05 NaN 20.415 72 31 3 NaN NaN NaN NaN 0 NaN NaN 0 1603200 + 37013 21645 24580 25067 0.1157070564845526 LQRRDDSVL 9 Unmodified _LQRRDDSVL_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.3045043945312 2 551.304187 1100.59382 NaN NaN NaN NaN NaN NaN NaN 19.63 1 19.63 19.13 20.13 0 0 0 0 0.85261 1 9830 9830 0 0 1 + 37014 17414 24581 25068 43628 43628 0.04754744732167637 LQRRRQLRRRR 11 Unmodified _LQRRRQLRRRR_ 0 0 0 REV__ENSG00000215612|ENST00000400677|HMX1 REV__ENSG00000215612|ENST00000400677|HMX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2571411132812 3 532.008485 1593.00362 NaN NaN NaN NaN NaN NaN NaN 23.683 1 23.683 23.183 24.183 0 0 0 0 0.9435 1 12079 12079 0 0 1 + 37015 24344 24582 25069 43629 43629 0.2308431991609723 LQSDRWTEYSI 11 Unmodified _LQSDRWTEYSI_ 0 0 0 ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.8412475585938 2 699.338424 1396.66229 1.2973 0.00090725 0.19799 0.00013846 1.4953 0.0010457 699.3385374771184 50.38 0.42262 50.331 50.191 50.613 -0.048824 60 20 4 0 0 0 0.65846 1 27321 27321 8.1555 2.4237 1 10032000 37016 13285 24583 25070 43630 43630 -0.02017055478609109 LQSDRWTEYSI 11 Unmodified _LQSDRWTEYSI_ 0 0 0 ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF ENST00000433031.1_1_7:57216973-57217525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.3385009765625 2 699.338424 1396.66229 0.020895 1.4612E-05 0.52735 0.00036879 0.54824 0.00038341 699.338760104483 54.039 0.49627 53.972 53.765 54.262 -0.066936 96 24 6 0 0 0 0.50515 1 29372 29372 16.149 3.9084 1 209420000 37017 13285 24583 25070 43631 43631 -0.02017055478609109 LQSEKETY 8 Unmodified _LQSEKETY_ 0 0 0 nc|ENSG00000163026|Q9H6R7-3|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2464599609375 2 499.245472 996.476391 0.28962 0.00014459 0.84008 0.00041941 1.1297 0.000564 499.2458905966551 37.405 0.52081 37.405 37.159 37.68 0 72 27 3 0 0 0 0.63229 2 19930 19817;19930 23.148 1.4018 1 10712000 37018 6942 24584 25071 43632;43633 43633 -0.02198832927285821 LQSEKETY 8 Unmodified _LQSEKETY_ 0 0 0 nc|ENSG00000163026|Q9H6R7-3|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP;ENSG00000163026|ENST00000295148|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP nc|ENSG00000163026|Q9H6R7-3|WDCP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.245472 996.476391 -0.090342 -4.5103E-05 2.3972 0.0011968 2.3069 0.0011517 499.24658290529806 37.307 0.26948 37.329 37.195 37.464 0.021545 -0.046444 0.00089578 NaN 23.148 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 839090 37019 6942 24584 25071 -0.02198832927285821 LQSFPTSPA 9 Unmodified _LQSFPTSPA_ 0 0 0 ENSG00000154118|ENST00000284262|JPH3 ENSG00000154118|ENST00000284262|JPH3 ENSG00000154118|ENST00000284262|JPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2459106445312 2 474.245275 946.475997 1.1015 0.00052238 -0.68404 -0.0003244 0.41746 0.00019798 474.24516966349245 61.571 0.66841 55.395 54.968 55.637 -6.1757 56 33 2 0 0 0 0.042911 1 39481 39481 48.346 2.3249 1 66857000 37020 6297 24585 25072 43634 43634 0.0006179214352641793 LQSKKLFTKD 10 Unmodified _LQSKKLFTKD_ 0 0 0 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3640747070312 2 604.355888 1206.69722 2.8498 0.0017223 -0.41798 -0.00025261 2.4318 0.0014697 604.3556241763325 97.151 1.7313 97.144 96.747 98.479 -0.007019 245 64 5 0 0 0 0.71413 1 54440 54440 1.3295 0.13619 1 177410000 + 37021 23948 24586 25073 43635 43635 0.10214232119983535 LQSRFHLY 8 Unmodified _LQSRFHLY_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.287353515625 2 532.287808 1062.56106 0.25763 0.00013714 0.74368 0.00039585 1.0013 0.00053299 532.2873133508284 78.967 0.65449 78.481 78.238 78.893 -0.48596 44 27 3 0 0 0 0.80143 1 43329 43329 5.7604 0.52976 1 4300300 + 37022 23262 24587 25074 43636 43636 0.03228582399992774 LQSRGWDI 8 Unmodified _LQSRGWDI_ 0 0 0 REV__ENSG00000136710|ENST00000259229|CCDC115 REV__ENSG00000136710|ENST00000259229|CCDC115 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7559509277344 2 487.756341 973.498129 NaN NaN NaN NaN NaN NaN NaN 28.484 1 28.422 27.922 28.922 -0.062159 0 0 0 0.97444 1 14706 14706 2.3027 0 1 + 37023 20175 24588 25075 43637 43637 0.01032016611952713 LQTAEEHMQL 10 Unmodified _LQTAEEHMQL_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2899780273438 2 600.289888 1198.56522 NaN NaN NaN NaN NaN NaN NaN 30.877 1 30.877 30.377 31.377 0 0 0 0 0.88176 1 16061 16061 8.7454 1.4562 1 37024 5825 24589 25076 43638 43638 -0.026117409592643526 LQTQKVPFI 9 Unmodified _LQTQKVPFI_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7816162109375 2 537.321317 1072.62808 0.52763 0.00028351 1.2242 0.00065779 1.7518 0.0009413 537.3218574480325 67.665 0.39816 61.49 61.323 61.721 -6.1757 28 22 2 0 0 0 0.19205 1 44215 44215 14.838 2.3067 1 14680000 37025 1657 24590 25077 43639 43639 0.09467192891088416 LQTWTGNNLPF 11 Unmodified _LQTWTGNNLPF_ 0 0 0 REV__nc|ENSG00000135503|P36896-4|ACVR1B REV__nc|ENSG00000135503|P36896-4|ACVR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8279418945312 2 645.827495 1289.64044 0.46301 0.00029903 0.22169 0.00014317 0.6847 0.0004422 645.8271338368077 61.266 0.2398 61.223 61.084 61.324 -0.04351 26 11 3 0 0 0 0.16973 1 33409 33409 34.402 3.1334 1 12015000 + 37026 29646 24591 25078 43640 43640 0.0072018456346540916 LQVDVHLFTC 10 Unmodified _LQVDVHLFTC_ 0 0 0 REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.2904675871506348|0.2278259033593264|2.5|179.0|37|3|anti-sense REV__L1MC1_dup2138|chr3:11203375-11203979:-|1.2904675871506348|0.2278259033593264|2.5|179.0|37|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 587.802734375 2 587.799891 1173.58523 NaN NaN NaN NaN NaN NaN NaN 19.845 1 17.188 16.688 17.688 -2.6564 0 0 0 0.96443 1 10542 10542 4.5289 0.93237 1 + 37027 29406 24592 25079 43641 43641 0.005380547713684791 LQVRGPLQI 9 Unmodified _LQVRGPLQI_ 0 0 0 REV__ENSG00000061656|ENST00000374273|SPAG4 REV__ENSG00000061656|ENST00000374273|SPAG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3187866210938 2 512.319109 1022.62366 0.50579 0.00025913 -0.97714 -0.00050061 -0.47135 -0.00024148 512.3188432493462 48.967 0.21767 48.923 48.81 49.027 -0.04369 21 10 3 0 0 0 0.10734 1 26436 26436 32.305 0 1 1825600 + 37028 17332 24593 25080 43642 43642 0.11325728468182206 LQVRGPLQI 9 Unmodified _LQVRGPLQI_ 0 0 0 REV__ENSG00000061656|ENST00000374273|SPAG4 REV__ENSG00000061656|ENST00000374273|SPAG4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.319109 1022.62366 0.50579 0.00025913 -0.97714 -0.00050061 -0.47135 -0.00024148 512.3188432493462 48.967 0.21767 48.923 48.81 49.027 -0.04369 -0.085817 9.5599E-05 NaN 32.305 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1825600 + 37029 17332 24593 25080 0.11325728468182206 LQVRGPLQI 9 Unmodified _LQVRGPLQI_ 0 0 0 REV__ENSG00000061656|ENST00000374273|SPAG4 REV__ENSG00000061656|ENST00000374273|SPAG4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 512.319109 1022.62366 0.91412 0.00046832 -1.137 -0.00058249 -0.22284 -0.00011417 512.3185684848897 54.984 0.21859 49.095 48.989 49.208 -5.8885 0.085817 -6.8154E-05 NaN 32.305 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 10309000 + 37030 17332 24593 25080 0.11325728468182206 LQVSFMQNIQL 11 Unmodified _LQVSFMQNIQL_ 0 0 0 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.853515625 2 660.852655 1319.69076 NaN NaN NaN NaN NaN NaN NaN 65.651 1 65.651 65.151 66.151 0 0 0 0 0.94201 1 36616 36616 1.0715 0 1 + 37031 29488 24594 25081 43643 43643 0.043699708969825224 LQVSIGVLSI 10 Unmodified _LQVSIGVLSI_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8220825195312 2 514.82115 1027.62775 1.0485 0.00053978 0.33273 0.0001713 1.3812 0.00071107 514.8212578570248 79.475 1.619 73.299 72.37 73.989 -6.1757 161 96 2 0 0 0 0.1028 1 51762 51762 46.021 0 1 14663000 37032 1983 24595 25082 43644 43644 0.11503773171239118 LQVSIHVIR 9 Unmodified _LQVSIHVIR_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8319702148438 2 532.832383 1063.65021 -0.057061 -3.0404E-05 -0.6651 -0.00035439 -0.72216 -0.00038479 532.8323306918812 37.625 0.33649 37.642 37.479 37.816 0.01704 30 16 3 0 0 0 0.022193 1 19985 19985 61.357 1.2836 1 4024700 + 37033 20701 24596 25083 43645 43645 0.12093417359483283 LQVSIHVIR 9 Unmodified _LQVSIHVIR_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7910766601562 2 532.832383 1063.65021 -0.057061 -3.0404E-05 -0.6651 -0.00035439 -0.72216 -0.00038479 532.8323306918812 37.625 0.33649 37.642 37.479 37.816 0.01704 30 16 3 0 0 0 0.21709 1 20074 20074 3.2813 0 1 4024700 + 37034 20701 24596 25083 43646 43646 0.12093417359483283 LQWDAGAVGYG 11 Unmodified _LQWDAGAVGYG_ 0 0 0 ENST00000445155.5_3_10:106014771-106014894:+|nuORF ENST00000445155.5_3_10:106014771-106014894:+|nuORF ENST00000445155.5_3_10:106014771-106014894:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7728271484375 2 568.772188 1135.52982 0.34753 0.00019766 -0.92176 -0.00052427 -0.57423 -0.00032661 568.7716223168394 48.934 0.86494 48.891 48.591 49.456 -0.04369 146 42 6 0 0 0 0.61059 1 26573 26573 10.8 1.4164 1 794550000 37035 13449 24597 25084 43647 43647 -0.03252035424748101 LQWDKVLRL 9 Unmodified _LQWDKVLRL_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MSMS AL20221201_MKP_PDAC_01 4 390.9053649902344 3 390.904636 1169.69208 NaN NaN NaN NaN NaN NaN NaN 93.907 1 87.732 87.232 88.232 -6.1757 0 0 0 0.38798 1 62190 62190 20.581 9.682 1 37036 6490 24598 25085 43648 43648 0.11401973048032232 LQWKYNYTFY 10 Unmodified _LQWKYNYTFY_ 0 0 0 ENST00000381298.6_1_5:55235198-55235360:-|nuORF ENST00000381298.6_1_5:55235198-55235360:-|nuORF ENST00000381298.6_1_5:55235198-55235360:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 713.3466796875 2 713.34552 1424.67649 NaN NaN NaN NaN NaN NaN NaN 25.773 1 22.822 22.322 23.322 -2.9511 0 0 0 0.9731 1 14133 14133 3.5965 0.60125 1 37037 12615 24599 25086 43649 43649 -0.018863582596850392 LQYFYPEELD 10 Unmodified _LQYFYPEELD_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.3402709960938 2 658.805894 1315.59723 -0.025857 -1.7035E-05 -0.1179 -7.7673E-05 -0.14376 -9.4708E-05 658.8058667702884 90.196 0.21259 90.196 90.02 90.233 0 26 16 2 0 0 0 0.24008 1 49811 49811 0.40072 0 1 630460 37038 6277 24600 25087 43650 43650 -0.04794050004466044 LRAAGWVGPWL 11 Unmodified _LRAAGWVGPWL_ 0 0 0 ENST00000322610.12_2_16:28877725-28877995:+|nuORF ENST00000322610.12_2_16:28877725-28877995:+|nuORF ENST00000322610.12_2_16:28877725-28877995:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2320251464844 3 409.232864 1224.67676 -0.44995 -0.00018413 -1.2584 -0.00051499 -1.7084 -0.00069913 409.23247166405935 36.995 0.2266 37.016 36.881 37.108 0.021545 24 10 3 0 0 0 0.54936 1 19604 19604 7.4771 1.6089 1 3903900 37039 11788 24601 25088 43651 43651 0.07341106250851226 LRAASTSTSGL 11 Unmodified _LRAASTSTSGL_ 0 0 0 ENST00000305123.5_1_2:227663009-227664002:-|nuORF ENST00000305123.5_1_2:227663009-227664002:-|nuORF ENST00000305123.5_1_2:227663009-227664002:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 355.1958618164062 3 355.196256 1062.56694 NaN NaN NaN NaN NaN NaN NaN 40.073 1 40.073 39.573 40.573 0 0 0 0 0.93933 1 21521 21521 1.2148 0 1 37040 11612 24602 25089 43652 43652 0.038156361209985334 LRAGGPHCSSF 11 Unmodified _LRAGGPHCSSF_ 0 0 0 REV__ENST00000525815.5_2_11:107729710-107729809:-|nuORF REV__ENST00000525815.5_2_11:107729710-107729809:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.85107421875 3 377.850314 1130.52911 0.43408 0.00016402 2.1333 0.00080607 2.5674 0.00097008 377.8507373969928 38.706 0.28049 38.706 38.577 38.858 0 21 12 2 0 0 0 0.65846 1 20719 20719 4.1166 1.6181 1 1741100 + 37041 28359 24603 25090 43653 43653 -0.03093153345457722 LRAGGPHCSSF 11 Unmodified _LRAGGPHCSSF_ 0 0 0 REV__ENST00000525815.5_2_11:107729710-107729809:-|nuORF REV__ENST00000525815.5_2_11:107729710-107729809:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8499755859375 3 377.850314 1130.52911 -0.013664 -5.1628E-06 -0.24553 -9.2774E-05 -0.25919 -9.7936E-05 377.85018955932827 38.999 0.25167 38.713 38.585 38.836 -0.28687 18 10 2 0 0 0 0.65846 1 20583 20583 4.1166 2.787 1 4802000 + 37042 28359 24603 25090 43654 43654 -0.03093153345457722 LRAKHQPC 8 Unmodified _LRAKHQPC_ 0 0 0 REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF REV__ENST00000329082.11_1_15:93586813-93587449:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.7593688964844 2 476.760904 951.507254 NaN NaN NaN NaN NaN NaN NaN 22.773 1 19.995 19.495 20.495 -2.7784 0 0 0 0.65904 1 12272 12272 30.225 5.5509 1 + 37043 25583 24604 25091 43655 43655 0.029560866966335198 LRALERLAPG 10 Unmodified _LRALERLAPG_ 0 0 0 ENST00000489118.1_1_3:41288422-41292488:-|nuORF;ENSG00000168038|ENST00000301831|ULK4 ENST00000489118.1_1_3:41288422-41292488:-|nuORF ENST00000489118.1_1_3:41288422-41292488:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3350830078125 2 548.33529 1094.65603 -0.01534 -8.4115E-06 -0.56446 -0.00030952 -0.5798 -0.00031793 548.3349983992847 25.096 0.48501 22.213 21.959 22.444 -2.8831 116 43 3 0 0 0 0.63399 1 13833 13833 9.3831 0.63772 1 73704000 37044 7708 24605 25092 43656 43656 0.11248515871147902 LRALLPFSL 9 Unmodified _LRALLPFSL_ 0 0 0 REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3245849609375 2 515.326402 1028.63825 0.90321 0.00046545 -2.071 -0.0010672 -1.1678 -0.0006018 515.8281423544416 102.27 0.23571 96.091 95.957 96.193 -6.1757 18 12 2 0 0 0 0.30562 1 68622 68622 16.942 4.4107 1 5572800 + 37045 27365 24606 25093 43657 43657 0.1250780061632213 LRAMKATEDGL 11 Unmodified _LRAMKATEDGL_ 0 0 0 ENST00000325006.7_1_7:129066991-129067174:+|nuORF ENST00000325006.7_1_7:129066991-129067174:+|nuORF ENST00000325006.7_1_7:129066991-129067174:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2156982421875 3 402.216662 1203.62816 NaN NaN NaN NaN NaN NaN NaN 28.389 1 25.241 24.741 25.741 -3.1482 0 0 0 0.90499 1 15832 15832 7.0371 0.41363 1 37046 11807 24607 25094 43658 43658 0.03448824828774377 LRAPPRLDRL 10 Unmodified _LRAPPRLDRL_ 0 0 0 ENST00000566844.1_1_15:72563590-72564742:-|nuORF ENST00000566844.1_1_15:72563590-72564742:-|nuORF ENST00000566844.1_1_15:72563590-72564742:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.919189453125 3 402.919168 1205.73567 0.3155 0.00012712 -0.10197 -4.1087E-05 0.21352 8.6032E-05 402.91926468815416 85.284 1.0891 79.108 78.657 79.746 -6.1757 120 65 2 0 0 0 0.60478 1 56222 56222 10.899 1.355 1 40500000 37047 15425 24608 25095 43659 43659 0.1410358254518087 LRAPRERPA 9 Unmodified _LRAPRERPA_ 0 0 0 REV__ENSG00000137414|ENST00000259963|FAM8A1 REV__ENSG00000137414|ENST00000259963|FAM8A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.880615234375 3 355.880713 1064.62031 0.85347 0.00030373 1.1927 0.00042447 2.0462 0.0007282 355.88096889454386 15.136 0.18 12.608 12.52 12.7 -2.5273 54 25 3 0 0 0 0.42049 1 7736 7736 11.495 1.9507 1 7243300 + 37048 20237 24609 25096 43660 43660 0.09058478414181081 LRARIQASI 9 Unmodified _LRARIQASI_ 0 0 0 REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3224487304688 2 514.322183 1026.62981 0.80767 0.0004154 0.82804 0.00042588 1.6357 0.00084128 514.3232479295019 39.24 0.58574 34.789 34.506 35.091 -4.4509 61 36 3 0 0 0 0.070838 1 23342 23342 39.957 1.9833 1 26559000 + 37049 18103 24610 25097 43661 43661 0.11756246699701478 LRARIQASI 9 Unmodified _LRARIQASI_ 0 0 0 REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 514.322183 1026.62981 0.80767 0.0004154 0.82804 0.00042588 1.6357 0.00084128 514.3232479295019 39.24 0.58574 34.789 34.506 35.091 -4.4509 0.071044 0.00028727 NaN 39.957 61 36 3 NaN NaN NaN NaN 0 NaN NaN 0 26559000 + 37050 18103 24610 25097 0.11756246699701478 LRARLLQPRVR 11 Unmodified _LRARLLQPRVR_ 0 0 0 ENSG00000130193|ENST00000336138|THEM6 ENSG00000130193|ENST00000336138|THEM6 ENSG00000130193|ENST00000336138|THEM6 MSMS AL20221201_MKP_PDAC_01 4 459.9699096679688 3 459.968633 1376.88407 NaN NaN NaN NaN NaN NaN NaN 103.91 1 97.73 97.23 98.23 -6.1757 0 0 0 0.94337 1 69626 69626 0.094841 0 1 37051 4188 24611 25098 43662 43662 0.2107031351886235 LRARWPHL 8 Unmodified _LRARWPHL_ 0 0 0 ENST00000432179.1_1_2:111881452-111881569:+|nuORF ENST00000432179.1_1_2:111881452-111881569:+|nuORF ENST00000432179.1_1_2:111881452-111881569:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.2120361328125 3 350.210282 1047.60902 NaN NaN NaN NaN NaN NaN NaN 17.381 1 14.795 14.295 15.295 -2.5866 0 0 0 0.97348 1 9082 9082 3.9444 0 1 37052 13273 24612 25099 43663 43663 0.08711701110701142 LRCACAQH 8 Unmodified _LRCACAQH_ 0 0 0 ENST00000524193.1_1_8:38663043-38663160:+|nuORF ENST00000524193.1_1_8:38663043-38663160:+|nuORF ENST00000524193.1_1_8:38663043-38663160:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7436828613281 2 451.210189 900.405826 -0.46284 -0.00020884 1.2404 0.00055969 0.77759 0.00035085 451.20837478525044 32.073 0.16342 32.073 31.983 32.146 0 19 7 3 0 0 0 8.7369 1 16731 16731 5.7604 0 1 854550 37053 14773 24613 25100 43664 43664 -0.04836107997584804 LRCFLFFG 8 Unmodified _LRCFLFFG_ 0 0 0 REV__ENSG00000122012|ENST00000502798|SV2C REV__ENSG00000122012|ENST00000502798|SV2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7643432617188 2 501.765123 1001.51569 NaN NaN NaN NaN NaN NaN NaN 1.1857 1 1.165 0.66503 1.665 -0.020623 0 0 0 0.97444 1 611 611 0.79363 0 1 + 37054 19323 24614 25101 43665 43665 0.01499640613246811 LRCPPWPA 8 Unmodified _LRCPPWPA_ 0 0 0 ENST00000250916.5_1_19:1853365-1853566:-|nuORF ENST00000250916.5_1_19:1853365-1853566:-|nuORF ENST00000250916.5_1_19:1853365-1853566:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2443237304688 2 470.247098 938.479642 NaN NaN NaN NaN NaN NaN NaN 76.148 1 75.669 75.169 76.169 -0.47945 0 0 0 0.97444 1 41686 41686 2.5775 0 1 37055 11142 24615 25102 43666 43666 0.007941834363805356 LRCSLSHAI 9 Unmodified _LRCSLSHAI_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2715454101562 2 500.273844 998.533135 NaN NaN NaN NaN NaN NaN NaN 78.797 1 78.797 78.297 79.297 0 0 0 0 0.76439 1 43780 43780 7.2892 0.56607 1 37056 2113 24616 25103 43667 43667 0.03380936148244018 LRCWWQRTL 9 Unmodified _LRCWWQRTL_ 0 0 0 REV__ENST00000463715.5_3_1:46714207-46726591:+|nuORF REV__ENST00000463715.5_3_1:46714207-46726591:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3378295898438 2 631.334767 1260.65498 1.0589 0.00066853 1.9963 0.0012604 3.0552 0.0019289 631.3363982181602 37.331 0.30508 33.048 32.891 33.196 -4.2835 31 17 2 0 0 0 0.2324 1 21850 21850 21.747 3.3736 1 17362000 + 37057 27357 24617 25104 43668 43668 0.03507978230595654 LRDEELLVA 9 Unmodified _LRDEELLVA_ 0 0 0 REV__ENSG00000126870|ENST00000407559|DYNC2I1 REV__ENSG00000126870|ENST00000407559|DYNC2I1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2982788085938 2 529.298039 1056.58152 0.18059 9.5588E-05 0.86414 0.00045739 1.0447 0.00055298 529.2982443694377 23.598 0.30628 20.771 20.549 20.855 -2.8273 31 17 2 0 0 0 0.57331 1 12678 12678 2.9952 2.9952 1 2258500 + 37058 19565 24618 25105 43669 43669 0.055497082691545074 LRDEFIPTI 9 Unmodified _LRDEFIPTI_ 0 0 0 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 ENSG00000174145|ENST00000309447|NWD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8121337890625 2 552.308406 1102.60226 0.6067 0.00033509 -3.5369 -0.0019534 -2.9302 -0.0016183 552.3077521516072 67.137 0.29942 67.155 66.939 67.239 0.018028 22 14 2 0 0 0 0.19891 1 36780 36780 11.64 4.9171 1 1477900 37059 8394 24619 25106 43670 43670 0.055062986488110255 LRDEWRPELP 10 Unmodified _LRDEWRPELP_ 0 0 0 REV__nc|ENSG00000184730|Q0VD83-3|APOBR REV__nc|ENSG00000184730|Q0VD83-3|APOBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.90087890625 3 437.566571 1309.67788 -0.55214 -0.0002416 0.40032 0.00017517 -0.15182 -6.643E-05 437.56674442457836 27.803 0.30692 27.803 27.638 27.945 0 26 14 2 0 0 0 0.68844 1 14412 14412 4.1895 2.1035 1 4378100 + 37060 29848 24620 25107 43671 43671 0.03543275829110826 LRDFLNWPF 9 Unmodified _LRDFLNWPF_ 0 0 0 REV__ENST00000610272.1_1_1:179851092-179851290:-|nuORF REV__ENST00000610272.1_1_1:179851092-179851290:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.0486755371094 3 403.213469 1206.61858 0.92541 0.00037314 -0.11552 -4.658E-05 0.80988 0.00032656 403.2137531671957 18.811 0.30582 16.19 16.014 16.32 -2.6215 27 22 2 0 0 0 0.21473 1 9898 9898 2.4985 0 1 3572600 + 37061 29338 24621 25108 43672 43672 0.023534246055533004 LRDPAGIF 8 Unmodified _LRDPAGIF_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;MAP4K4|p.R43Sfs*4|1|0.07|ENSG00000071054|chr2:101698535-101698536|-/A|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.7507629394531 2 444.750527 887.486502 0.76552 0.00034046 -0.63901 -0.0002842 0.12651 5.6266E-05 444.7503246448557 68.123 0.35373 68.148 67.983 68.337 0.025146 42 17 3 0 0 0 0.64853 1 37400 37400 21.747 3.6117 1 14750000 37062 1049;6319;5339 24622 25109 43673 43673 0.03825819588621471 LRDPAGIF 8 Unmodified _LRDPAGIF_ 0 0 0 nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000572330.5_1_17:4736842-4793277:+|nuORF;MAP4K4|p.R43Sfs*4|1|0.07|ENSG00000071054|chr2:101698535-101698536|-/A|frameshift_variant;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.750527 887.486502 0.29688 0.00013204 0.028427 1.2643E-05 0.32531 0.00014468 444.75046881377386 68.671 0.27682 68.19 68.053 68.33 -0.48071 0.021007 0.00030641 NaN 21.747 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3057900 37063 1049;6319;5339 24622 25109 0.03825819588621471 LRDVRERL 8 Unmodified _LRDVRERL_ 0 0 0 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8832397460938 3 352.880602 1055.61998 0.0051663 1.8231E-06 2.1769 0.00076818 2.1821 0.00077001 352.88233884645575 33.797 0.51285 33.826 33.672 34.185 0.028934 39 22 3 0 0 0 0.80383 1 17911 17911 4.3292 0 1 2969600 37064 6772 24623 25110 43674 43674 0.09439058694329105 LRDWFTRF 8 Unmodified _LRDWFTRF_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.894775390625 3 380.869814 1139.58761 1.327 0.00050541 0.38628 0.00014712 1.7133 0.00065253 380.87022952646396 39.098 0.33687 34.647 34.488 34.825 -4.4509 45 21 3 0 0 0 8.7369 1 23053 23053 6.7232 1.8262 1 18565000 + 37065 17684 24624 25111 43675 43675 0.023402712913366486 LREEPLLLEM 10 Unmodified _LREEPLLLEM_ 0 0 0 REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8429565429688 2 621.841756 1241.66896 NaN NaN NaN NaN NaN NaN NaN 87.024 1 86.521 86.021 87.021 -0.50318 0 0 0 0.97855 1 47609 47609 2.9952 0 1 + 37066 23646 24625 25112 43676 43676 0.05779166148408876 LREEPLLLEM 10 Unmodified _LREEPLLLEM_ 0 0 0 REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF REV__ENST00000478344.6_1_9:140240296-140248823:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 621.8427124023438 2 621.841756 1241.66896 NaN NaN NaN NaN NaN NaN NaN 96.318 1 90.143 89.643 90.643 -6.1757 0 0 0 0.42631 1 63826 63826 29.841 9.426 1 + 37067 23646 24625 25112 43677 43677 0.05779166148408876 LREFEELPL 9 Unmodified _LREFEELPL_ 0 0 0 REV__ENSG00000163075|ENST00000413369|CFAP221 REV__ENSG00000163075|ENST00000413369|CFAP221 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5445556640625 3 382.544885 1144.61282 0.62855 0.00024045 -0.69423 -0.00026557 -0.06568 -2.5126E-05 382.5447160346672 50.798 0.54879 50.384 50.092 50.64 -0.41351 45 26 2 0 0 0 0.54444 1 27465 27465 2.7352 0 1 2486000 + 37068 21722 24626 25113 43678 43678 0.04630281303229822 LREHFREKHFL 11 Unmodified _LREHFREKHFL_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000565396.5_1_16:2050390-2052694:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.94677734375 3 504.612515 1510.81572 0.47217 0.00023826 -0.67856 -0.00034241 -0.20639 -0.00010414 504.612011033667 65.803 0.24789 59.627 59.51 59.758 -6.1757 24 14 2 0 0 0 0.69838 1 42773 42773 4.4062 0 1 20445000 37069 7685 24627 25114 43679 43679 0.08074024148345416 LREIDESVCSE 11 Unmodified _LREIDESVCSE_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.294677734375 2 640.295367 1278.57618 0.64216 0.00041117 1.38 0.0008836 2.0221 0.0012948 640.2964381184808 42.959 0.30542 38.274 38.125 38.431 -4.6846 25 19 2 0 0 0 0.58219 1 26017 26017 12.241 2.1667 1 8097700 37070 5105 24628 25115 43680 43680 -0.05196383375619007 LREIEEEKL 9 Unmodified _LREIEEEKL_ 0 0 0 REV__HOMER1|p.K271Q|1|0.21|ENSG00000152413|chr5:79396888-79396888|T/G|missense_variant REV__HOMER1|p.K271Q|1|0.21|ENSG00000152413|chr5:79396888-79396888|T/G|missense_variant MSMS AL20221201_MKP_PDAC_01 4 579.8189697265625 2 579.821878 1157.6292 NaN NaN NaN NaN NaN NaN NaN 85.174 1 78.999 78.499 79.499 -6.1757 0 0 0 0.074615 1 56079 56079 49.933 0 1 + 37071 21117 24629 25116 43681 43681 0.056693624693252787 LREKLGARRP 10 Unmodified _LREKLGARRP_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2496948242188 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 37.886 1 37.886 37.386 38.386 0 0 0 0 0.99897 1 20195 20195 0.77653 0.50751 1 + 37072 24608 24630 25117 43682 43682 0.14134698402403956 LREKVLDLW 9 Unmodified _LREKVLDLW_ 0 0 0 REV__nc|ENSG00000135899|Q9HB58|SP110 REV__nc|ENSG00000135899|Q9HB58|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8471069335938 2 586.345323 1170.67609 0.29261 0.00017157 -0.71865 -0.00042138 -0.42605 -0.00024981 586.3444538810184 80.178 0.29025 80.235 80.094 80.384 0.057587 20 15 2 0 0 0 0.20507 1 44291 44291 24.021 4.7636 1 26126000 + 37073 20106 24631 25118 43683 43683 0.09758266811127214 LRELVAWFI 9 Unmodified _LRELVAWFI_ 0 0 0 ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8941040039062 3 382.893848 1145.65972 1.2221 0.00046792 0.058244 2.2301E-05 1.2803 0.00049022 382.8938463435607 48.058 0.70694 42.824 42.435 43.142 -5.2339 95 42 3 0 0 0 0.36964 1 29847 29847 13.615 0 1 24209000 37074 14328 24632 25119 43684 43684 0.09271185645025071 LRELVAWFI 9 Unmodified _LRELVAWFI_ 0 0 0 ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENST00000494129.1_1_2:192246088-192252282:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.893848 1145.65972 0.5526 0.00021159 -0.038878 -1.4886E-05 0.51372 0.0001967 382.89383713917573 42.974 0.54769 42.958 42.698 43.246 -0.015667 0.066975 -7.3663E-05 NaN 13.615 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 3089500 37075 14328 24632 25119 0.09271185645025071 LRENKGFG 8 Unmodified _LRENKGFG_ 0 0 0 REV__nc|ENSG00000186075|Q6X784-2|ZPBP2 REV__nc|ENSG00000186075|Q6X784-2|ZPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7515869140625 2 460.751059 919.487565 0.7737 0.00035649 1.3191 0.00060779 2.0928 0.00096427 460.75110888785997 40.585 0.36934 36.055 35.889 36.258 -4.5294 39 22 2 0 0 0 0.46677 1 24322 24322 37.974 8.8924 1 17522000 + 37076 23548 24633 25120 43685 43685 0.024600339575385988 LREPGKAL 8 Unmodified _LREPGKAL_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2707824707031 2 442.271627 882.528701 0.40961 0.00018116 -0.30138 -0.00013329 0.10823 4.7868E-05 442.2713561091328 24.405 0.22285 21.578 21.501 21.724 -2.8273 21 12 2 0 0 0 0.50364 1 13318 13318 34.402 3.7652 1 3569900 37077 8007 24634 25121 43686 43686 0.08273794996978268 LRERELYL 8 Unmodified _LRERELYL_ 0 0 0 REV__ENSG00000164483|ENST00000439090|SAMD3 REV__ENSG00000164483|ENST00000439090|SAMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5458984375 3 364.545108 1090.61349 1.4258 0.00051978 -3.5024 -0.0012768 -2.0766 -0.000757 364.87772677527573 28.681 0.33755 25.533 25.34 25.677 -3.1482 33 16 3 0 0 0 0.67686 1 16013 16013 19.257 3.1079 1 13129000 + 37078 21918 24635 25122 43687 43687 0.07181120742939129 LRERGWQK 8 Unmodified _LRERGWQK_ 0 0 0 ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENST00000579762.1_1_17:26684693-26685353:+|nuORF ENST00000579762.1_1_17:26684693-26685353:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2047119140625 3 358.205197 1071.59376 NaN NaN NaN NaN NaN NaN NaN 37.353 1 37.375 36.875 37.875 0.021545 0 0 0 0.97444 1 19822 19822 3.9444 2.2021 1 37079 15552 24636 25123 43688 43688 0.06082789522838539 LRERRNPL 8 Unmodified _LRERRNPL_ 0 0 0 ENST00000378513.7_1_1:2335272-2335374:+|nuORF ENST00000378513.7_1_1:2335272-2335374:+|nuORF ENST00000378513.7_1_1:2335272-2335374:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8812561035156 3 351.880713 1052.62031 0.86829 0.00030553 0.52729 0.00018554 1.3956 0.00049108 351.8809100212767 15.19 0.25361 12.662 12.533 12.787 -2.5273 104 36 4 0 0 0 0.74687 1 7727 7727 13.042 0.16986 1 22146000 37080 12548 24637 25124 43689 43689 0.09610478414174395 LREYQELMNA 10 Unmodified _LREYQELMNA_ 0 0 0 CON__Q9NSB2 CON__Q9NSB2 CON__Q9NSB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.8763122558594 3 422.876417 1265.60742 -0.72346 -0.00030593 -0.1913 -8.0895E-05 -0.91475 -0.00038683 422.8765518569164 27.757 0.16607 27.757 27.659 27.825 0 12 7 2 0 0 0 0.71042 1 14329 14329 1.7423 0 1 1164600 + 37081 211 24638 25125 43690 43690 -0.014757655508901735 LREYTLSL 8 Unmodified _LREYTLSL_ 0 0 0 REV__ENSG00000071553|ENST00000369762|ATP6AP1 REV__ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7828063964844 2 497.782025 993.549496 0.47677 0.00023733 1.0336 0.0005145 1.5103 0.00075182 497.7825176041403 38.51 0.38445 34.141 33.964 34.348 -4.3689 64 24 3 0 0 0 0.27285 1 22778 22778 58.679 0 1 105560000 + 37082 17496 24639 25126 43691 43691 0.052463405860066814 LRFHRCPCRD 10 Unmodified _LRFHRCPCRD_ 0 0 0 ENST00000380770.3_1_19:10397831-10398857:+|nuORF;nc|ENSG00000105371|Q14773-3|ICAM4 ENST00000380770.3_1_19:10397831-10398857:+|nuORF ENST00000380770.3_1_19:10397831-10398857:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.5882263183594 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 105.05 1 98.879 98.379 99.379 -6.1757 0 0 0 0.97592 1 70348 70348 1.5923 0 1 37083 12606 24640 25127 43692 43692 -0.015383377949774513 LRFKKGKLT 9 Unmodified _LRFKKGKLT_ 0 0 0 REV__ENSG00000244617|ENST00000320256|ASPRV1 REV__ENSG00000244617|ENST00000320256|ASPRV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8590087890625 2 545.858401 1089.70225 1.4831 0.00080957 -1.4711 -0.00080299 0.012047 6.5759E-06 545.8576534839351 106.08 0.87295 99.902 99.609 100.48 -6.1757 248 134 3 0 0 0 0.61381 1 71073 71073 0.52476 0 1 7211500 + 37084 24484 24641 25128 43693 43693 0.16098580773268623 LRFRLGGL 8 Unmodified _LRFRLGGL_ 0 0 0 ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF ENSG00000167700|ENST00000301327|MFSD3 ENSG00000167700|ENST00000301327|MFSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2958984375 2 466.295436 930.57632 1.3746 0.00064096 -0.57203 -0.00026673 0.80256 0.00037423 466.29540298991304 50.136 0.30468 50.087 49.886 50.191 -0.048824 24 14 3 0 0 0 0.78849 1 27112 27112 9.3474 2.6243 1 1222900 37085 7659 24642 25129 43694 43694 0.10825493987852042 LRFRLLRWWRR 11 Unmodified _LRFRLLRWWRR_ 0 0 0 ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.5044555664062 2 829.504952 1656.99535 NaN NaN NaN NaN NaN NaN NaN 61.36 1 60.871 60.371 61.371 -0.48932 0 0 0 0.9435 1 33420 33420 0 0 1 37086 12703 24643 25130 43695 43695 0.19313372946794516 LRFRVQRRQR 10 Unmodified _LRFRVQRRQR_ 0 0 0 REV__ENSG00000160813|ENST00000292330|PPP1R35 REV__ENSG00000160813|ENST00000292330|PPP1R35 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2108154296875 4 354.470818 1413.85417 0.16229 5.7528E-05 -1.3509 -0.00047885 -1.1886 -0.00042132 354.47025429998183 39.343 0.19073 39.354 39.217 39.408 0.011452 11 8 2 0 0 0 0.24011 1 20893 20893 0.15932 0.01943 1 706450 + 37087 21569 24644 25131 43696 43696 0.16379374573534733 LRFSLDDRV 9 Unmodified _LRFSLDDRV_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8089599609375 2 560.809105 1119.60366 0.32819 0.00018405 0.47251 0.00026499 0.8007 0.00044904 560.8092193249545 61.678 0.3138 61.191 61.011 61.325 -0.48764 34 14 3 0 0 0 0.30202 1 33599 33599 17.113 0.96379 1 4001300 37088 2166 24645 25132 43697 43697 0.04863932737566756 LRFSLDDRV 9 Unmodified _LRFSLDDRV_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.809326171875 2 560.809105 1119.60366 0.71442 0.00040065 -0.81037 -0.00045446 -0.095944 -5.3806E-05 560.8088439925949 61.262 0.29985 61.219 61.044 61.344 -0.04351 29 14 3 0 0 0 0.1685 1 33443 33443 26.268 3.6101 1 10073000 37089 2166 24645 25132 43698 43698 0.04863932737566756 LRGAFLRL 8 Unmodified _LRGAFLRL_ 0 0 0 ENST00000405854.5_1_22:50050446-50050731:-|nuORF ENST00000405854.5_1_22:50050446-50050731:-|nuORF ENST00000405854.5_1_22:50050446-50050731:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.3031616210938 2 473.303262 944.59197 0.93432 0.00044222 -0.27454 -0.00012994 0.65978 0.00031228 473.30324413543116 63.945 0.21112 63.935 63.845 64.056 -0.010532 19 10 2 0 0 0 0.17994 1 35010 35010 77.984 7.2688 1 3226300 37090 12926 24646 25133 43699 43699 0.11745780504884351 LRGAPAAH 8 Unmodified _LRGAPAAH_ 0 0 0 REV__ENST00000374232.7_1_9:115513139-115513385:+|nuORF REV__ENST00000374232.7_1_9:115513139-115513385:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.7278442382812 2 396.727387 791.44022 1.0595 0.00042035 -0.058695 -2.3286E-05 1.0008 0.00039706 396.72739285638795 19.104 0.28296 16.477 16.328 16.611 -2.627 38 18 3 0 0 0 0.71616 1 10059 10059 15.768 0 1 7678600 + 37091 26174 24647 25134 43700 43700 0.03615799477165638 LRGDRDKPRAI 11 Unmodified _LRGDRDKPRAI_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9222717285156 3 432.921349 1295.74222 0.91791 0.00039738 0.7278 0.00031508 1.6457 0.00071246 432.9216671302659 22.131 0.30496 19.396 19.237 19.542 -2.7348 35 16 3 0 0 0 0.46197 1 11880 11880 18.34 5.4838 1 5312700 37092 16693 24648 25135 43701 43701 0.10617475705885226 LRGDRDKPRAI 11 Unmodified _LRGDRDKPRAI_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 432.921349 1295.74222 0.25039 0.0001084 0.49077 0.00021247 0.74116 0.00032087 432.92134174091325 19.651 0.12505 19.659 19.588 19.713 0.0078506 0.13124 -0.00025952 NaN 18.34 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 987650 37093 16693 24648 25135 0.10617475705885226 LRGDRDKPRAI 11 Unmodified _LRGDRDKPRAI_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 432.921349 1295.74222 0.91791 0.00039738 0.7278 0.00031508 1.6457 0.00071246 432.9216671302659 22.131 0.30496 19.396 19.237 19.542 -2.7348 -0.13124 4.8326E-05 NaN 18.34 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5312700 37094 16693 24648 25135 0.10617475705885226 LRGFDAPL 8 Unmodified _LRGFDAPL_ 0 0 0 REV__ENSG00000108829|ENST00000225972|LRRC59 REV__ENSG00000108829|ENST00000225972|LRRC59 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.7510070800781 2 444.750527 887.486502 0.31709 0.00014103 1.0163 0.00045201 1.3334 0.00059304 444.75056307457675 93.369 0.63794 87.194 86.726 87.364 -6.1757 61 45 2 0 0 0 0.61462 1 61893 61893 24.674 0 1 25420000 + 37095 18632 24649 25136 43702 43702 0.03825819588610102 LRGLWQRWRRY 11 Unmodified _LRGLWQRWRRY_ 0 0 0 nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9 nc|ENSG00000155542|Q8NE22-2|SETD9 nc|ENSG00000155542|Q8NE22-2|SETD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.6355590820312 3 530.635654 1588.88513 0.6042 0.00032061 -1.9011 -0.0010088 -1.2969 -0.00068816 530.6345199291976 44.37 0.17223 39.518 39.425 39.597 -4.852 23 12 2 0 0 0 0.74429 1 27039 27039 0.094841 0.011491 1 18782000 37096 6394 24650 25137 43703 43703 0.11424527887788827 LRGNGKAA 8 Unmodified _LRGNGKAA_ 0 0 0 ENST00000473834.1_1_3:38065750-38065924:-|nuORF ENST00000473834.1_1_3:38065750-38065924:-|nuORF ENST00000473834.1_1_3:38065750-38065924:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.7337341308594 2 393.732669 785.450785 1.3571 0.00053433 -0.93995 -0.00037009 0.41714 0.00016424 393.73240847869874 20.179 0.4474 17.523 17.312 17.76 -2.6564 69 29 3 0 0 0 0.80232 1 10674 10674 5.2307 0 1 19984000 37097 13925 24651 25138 43704 43704 0.04947782131603162 LRGNVNGQLY 10 Unmodified _LRGNVNGQLY_ 0 0 0 REV__ENSG00000151012|ENST00000280612|SLC7A11 REV__ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5395812988281 3 378.540245 1132.59891 -0.62081 -0.000235 0.41216 0.00015602 -0.20865 -7.8984E-05 378.5403822033285 15.548 0.11278 15.548 15.501 15.614 0 55 33 2 0 0 0 0.69377 1 7489 7489 1.7423 0 1 1185100 + 37098 21046 24652 25139 43705 43705 0.03791048594825952 LRGPGLLRI 9 Unmodified _LRGPGLLRI_ 0 0 0 ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENST00000600689.1_1_19:18976320-18976969:+|nuORF ENST00000600689.1_1_19:18976320-18976969:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8310852050781 2 497.829643 993.644734 1.5342 0.00076379 -0.37621 -0.00018729 1.158 0.00057651 497.8295878693605 47.444 0.39404 42.21 42.057 42.451 -5.2339 37 22 2 0 0 0 0.10734 1 29438 29438 32.305 3.8186 1 11077000 37099 15801 24653 25140 43706 43706 0.14765738567689368 LRGQLLYLL 9 Unmodified _LRGQLLYLL_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.847412109375 2 544.844959 1087.67537 1.034 0.00056337 1.0951 0.00059664 2.1291 0.00116 544.8453385467348 71.272 0.37788 71.311 71.157 71.535 0.039024 40 16 4 0 0 0 0.019303 1 39209 39209 64.236 0 1 6238100 + 37100 22919 24654 25141 43707 43707 0.1350347216209684 LRGTLPRSL 9 Unmodified _LRGTLPRSL_ 0 0 0 ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENST00000467099.6_1_17:18003545-18010551:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8169860839844 2 506.816733 1011.61891 0.07243 3.6709E-05 -0.0054472 -2.7607E-06 0.066983 3.3948E-05 506.81668662800087 30.346 0.31196 30.376 30.207 30.519 0.030106 19 13 2 0 0 0 0.38785 1 15872 15872 13.042 2.2185 1 2031500 37101 13769 24655 25142 43708 43708 0.11356844325405291 LRGVKGGY 8 Unmodified _LRGVKGGY_ 0 0 0 ENST00000531778.1_1_11:134251834-134254167:-|nuORF;ENSG00000109956|ENST00000312527|B3GAT1;nc|ENSG00000109956|Q9P2W7-2|B3GAT1 ENST00000531778.1_1_11:134251834-134254167:-|nuORF ENST00000531778.1_1_11:134251834-134254167:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 425.2500915527344 2 425.250695 848.486836 NaN NaN NaN NaN NaN NaN NaN 43.296 1 38.531 38.031 39.031 -4.7648 0 0 0 0.88073 1 26280 26280 19.439 1.304 1 37102 2687 24656 25143 43709 43709 0.056532393084808064 LRGWGAAA 8 Unmodified _LRGWGAAA_ 0 0 0 REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2221374511719 2 401.221937 800.429321 0.839 0.00033663 -0.32063 -0.00012864 0.51838 0.00020798 401.2218219760949 49.921 0.33868 49.528 49.353 49.692 -0.3923 30 16 2 0 0 0 0.80143 1 26816 26816 5.7604 0 1 5624800 + 37103 25202 24657 25144 43710 43710 0.021123971028828237 LRGWGAAA 8 Unmodified _LRGWGAAA_ 0 0 0 REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2218627929688 2 401.221937 800.429321 0.61032 0.00024487 0.25498 0.0001023 0.8653 0.00034718 401.2219412778007 49.53 0.4735 49.481 49.29 49.763 -0.048828 57 23 3 0 0 0 0.80232 1 26823 26823 5.2307 0 1 14112000 + 37104 25202 24657 25144 43711 43711 0.021123971028828237 LRGYEGLGWTY 11 Unmodified _LRGYEGLGWTY_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2 REV__ENSG00000128731|ENST00000261609|HERC2 MSMS AL20221201_MKP_PDAC_01 4 657.8223266601562 2 657.827495 1313.64044 NaN NaN NaN NaN NaN NaN NaN 47.842 1 42.608 42.108 43.108 -5.2339 0 0 0 0.71214 1 29735 29735 20.415 7.3721 1 + 37105 19632 24658 25145 43712 43712 -0.0038381543652121763 LRHFLRRQYWH 11 Unmodified _LRHFLRRQYWH_ 0 0 0 ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF ENST00000513055.1_1_5:92921088-92921313:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.441650390625 2 806.442018 1610.86948 NaN NaN NaN NaN NaN NaN NaN 54.706 1 54.706 54.206 55.206 0 0 0 0 0.9435 1 30375 30375 0 0 1 37106 14631 24659 25146 43713 43713 0.08848241370742471 LRHHACPHHL 10 Unmodified _LRHHACPHHL_ 0 0 0 KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5471496582031 3 407.545448 1219.61451 -0.52141 -0.0002125 0.53923 0.00021976 0.017826 7.2651E-06 407.5467675602715 19.836 0.085743 19.836 19.789 19.874 0 8 5 2 0 0 0 0.71123 1 9956 9956 0.69767 0 1 325450 37107 15941 24660 25147 43714 43714 0.013490566308519192 LRHIAFQVV 9 Unmodified _LRHIAFQVV_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5536193847656 3 361.553826 1081.63965 0.11681 4.2235E-05 -0.19464 -7.0373E-05 -0.077826 -2.8138E-05 361.5536763113873 54.538 0.28384 54.471 54.338 54.622 -0.066936 20 13 2 0 0 0 0.54213 1 29596 29596 4.897 0.36815 1 4903400 + 37108 24168 24661 25148 43715 43715 0.10209434705075182 LRHIRHSDGE 10 Unmodified _LRHIRHSDGE_ 0 0 0 REV__ENSG00000124203|ENST00000371030|ZNF831 REV__ENSG00000124203|ENST00000371030|ZNF831 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.2134094238281 3 407.214532 1218.62177 NaN NaN NaN NaN NaN NaN NaN 9.6483 1 9.5586 9.0586 10.059 -0.08967 0 0 0 1.0024 1 4716 4716 0.13989 0 1 + 37109 19428 24662 25149 43716 43716 0.021200677122806155 LRHIRHSDGE 10 Unmodified _LRHIRHSDGE_ 0 0 0 REV__ENSG00000124203|ENST00000371030|ZNF831 REV__ENSG00000124203|ENST00000371030|ZNF831 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2130126953125 3 407.214532 1218.62177 NaN NaN NaN NaN NaN NaN NaN 9.0239 1 9.0415 8.5415 9.5415 0.017581 0 0 0 1.0024 1 4482 4482 0.13989 0.056541 1 + 37110 19428 24662 25149 43717 43717 0.021200677122806155 LRHLCHKRF 9 Unmodified _LRHLCHKRF_ 0 0 0 ENSG00000187609|ENST00000340951|EXD3 ENSG00000187609|ENST00000340951|EXD3 ENSG00000187609|ENST00000340951|EXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8977966308594 3 403.89771 1208.6713 0.31524 0.00012732 0.42437 0.0001714 0.7396 0.00029872 403.8974597691167 42.672 0.24845 42.663 42.561 42.809 -0.0088196 14 11 2 0 0 0 0.60485 1 22929 22929 1.0715 0 1 3668900 37111 9572 24663 25150 43718 43718 0.0753110418736469 LRHRVHGL 8 Unmodified _LRHRVHGL_ 0 0 0 REV__ENST00000320895.9_1_5:1344528-1345152:-|nuORF REV__ENST00000320895.9_1_5:1344528-1345152:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.3009033203125 2 494.301585 986.588616 0.15631 7.7266E-05 -0.8716 -0.00043084 -0.71529 -0.00035357 494.3010366454603 87.36 0.45955 87.36 87.156 87.616 0 48 21 3 0 0 0 0.80975 1 48417 48417 0.79363 0 1 2160900 + 37112 25507 24664 25151 43719 43719 0.09478530450894596 LRHYYKLNI 9 Unmodified _LRHYYKLNI_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;nc|ENSG00000010030|Q9Y603-7|ETV7;ENSG00000010030|ENST00000340181|ETV7;DDX39B-ETV7|4|fusion;nc|ENSG00000010030|Q9Y603-5|ETV7;DDX39B-ETV7|2|fusion;nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7;nc|ENSG00000010030|Q9Y603-6|ETV7;ENSG00000139083|ENST00000396373|ETV6 DDX39B-ETV7|3|fusion;ENSG00000139083|ENST00000396373|ETV6 DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2372436523438 3 407.236385 1218.68733 -0.36587 -0.00014899 1.0782 0.00043908 0.71233 0.00029009 407.2370225326452 30.811 0.51482 30.841 30.477 30.992 0.030104 41 22 3 0 0 0 0.58145 1 16190 16190 2.4985 0.59211 1 2979000 37113 230;5122 24665 25152 43720 43720 0.0867308890528875 LRIGVHFIF 9 Unmodified _LRIGVHFIF_ 0 0 0 ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF ENST00000390655.10_2_2:87068783-87068945:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8890075683594 3 367.890438 1100.64948 NaN NaN NaN NaN NaN NaN NaN 23.406 1 23.406 22.906 23.906 0 0 0 0 0.84564 1 11930 11930 1.0715 0 1 37114 12651 24666 25153 43721 43721 0.10318622710451564 LRIRKESDM 9 Unmodified _LRIRKESDM_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2141418457031 3 383.213252 1146.61793 -0.49442 -0.00018947 -0.28608 -0.00010963 -0.7805 -0.0002991 383.2136630758447 25.72 0.16525 25.72 25.613 25.779 0 14 7 3 0 0 0 0.55144 1 13221 13221 2.4985 0 1 1261400 + 37115 17456 24667 25154 43722 43722 0.05048261894194184 LRIRKESDM 9 Unmodified _LRIRKESDM_ 0 0 0 REV__ENSG00000069869|ENST00000435532|NEDD4 REV__ENSG00000069869|ENST00000435532|NEDD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 383.213252 1146.61793 -0.49442 -0.00018947 -0.28608 -0.00010963 -0.7805 -0.0002991 383.2136630758447 25.72 0.16525 25.72 25.613 25.779 0 0 0 NaN 2.4985 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1261400 + 37116 17456 24667 25154 0.05048261894194184 LRIYEPNF 8 Unmodified _LRIYEPNF_ 0 0 0 REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2821655273438 2 526.282192 1050.54983 0.39607 0.00020845 -0.43754 -0.00023027 -0.041468 -2.1824E-05 526.2818271103529 68.13 0.58234 68.155 67.755 68.337 0.025146 83 28 5 0 0 0 0.54555 1 37456 37456 30.637 5.2372 1 95383000 + 37117 27503 24668 25155 43723 43723 0.026577603058285604 LRIYEPNF 8 Unmodified _LRIYEPNF_ 0 0 0 REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF REV__ENST00000471762.1_1_1:66085660-66088754:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.282470703125 2 526.282192 1050.54983 0.18815 9.9022E-05 0.24077 0.00012671 0.42893 0.00022574 526.2823547119029 93.359 0.74875 87.184 86.683 87.432 -6.1757 136 52 3 0 0 0 0.58902 1 61596 61596 26.884 1.4843 1 138470000 + 37118 27503 24668 25155 43724 43724 0.026577603058285604 LRKCALVL 8 Unmodified _LRKCALVL_ 0 0 0 REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF REV__ENST00000561933.1_1_16:68344571-68344829:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 458.7833557128906 2 458.294048 914.573543 NaN NaN NaN NaN NaN NaN NaN 95.395 1 89.219 88.719 89.719 -6.1757 0 0 0 0.9706 1 63184 63184 6.3541 0.59368 1 + 37119 18283 24669 25156 43725 43725 0.11283902538662005 LRKDYEKTF 9 Unmodified _LRKDYEKTF_ 0 0 0 ENSG00000075945|ENST00000361580|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;nc|ENSG00000075945|Q92845-4|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 ENSG00000075945|ENST00000361580|KIFAP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.045654296875 3 400.552151 1198.63462 -0.026072 -1.0443E-05 0.81727 0.00032736 0.79119 0.00031691 400.5524158903991 28.478 0.16776 28.508 28.401 28.569 0.029564 12 6 2 0 0 0 0.21885 1 14837 14837 0.96228 0 1 1274600 37120 1175 24670 25157 43726 43726 0.043250860517900946 LRKEPDKELL 10 Unmodified _LRKEPDKELL_ 0 0 0 REV__ENSG00000185974|ENST00000335678|GRK1 REV__ENSG00000185974|ENST00000335678|GRK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5484619140625 3 414.246839 1239.71869 0.16867 6.9871E-05 -0.59197 -0.00024522 -0.4233 -0.00017535 414.24702593431584 48.533 0.37336 48.49 48.341 48.714 -0.04369 55 18 4 0 0 0 0.23356 1 26137 26137 11.518 4.0408 1 15905000 + 37121 23542 24671 25158 43727 43727 0.10841617148707883 LRKILIRKNLP 11 Unmodified _LRKILIRKNLP_ 0 0 0 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 ENSG00000180251|ENST00000295269|SLC9A4 MSMS AL20221201_MKP_PDAC_01 4 682.4672241210938 2 682.466638 1362.91872 NaN NaN NaN NaN NaN NaN NaN 105.62 1 99.447 98.947 99.947 -6.1757 0 0 0 0.9435 1 70759 70759 0 0 1 37122 8889 24672 25159 43728 43728 0.25178136606996304 LRKKLYELL 9 Unmodified _LRKKLYELL_ 0 0 0 ENST00000565367.5_1_15:55647651-55647789:+|nuORF ENST00000565367.5_1_15:55647651-55647789:+|nuORF ENST00000565367.5_1_15:55647651-55647789:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.589111328125 3 392.588536 1174.74378 1.829 0.00071806 -1.1096 -0.00043561 0.71945 0.00028245 392.58802285902084 105.12 0.08075 98.94 98.891 98.971 -6.1757 21 14 2 0 0 0 0.61381 1 70380 70380 0.23584 0 1 53770000 37123 15403 24673 25160 43729 43729 0.16339716741936172 LRKKVTVLE 9 Unmodified _LRKKVTVLE_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3547973632812 2 543.355691 1084.69683 1.4548 0.00079046 -2.1759 -0.0011823 -0.7211 -0.00039181 543.3540129943212 103.59 0.17031 97.41 97.349 97.519 -6.1757 52 31 2 0 0 0 0.55144 1 69429 69429 4.3292 0 1 12200000 37124 1879 24674 25161 43730 43730 0.15786857190778392 LRKLCFQW 8 Unmodified _LRKLCFQW_ 0 0 0 nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18 nc|ENSG00000154957|P17022-2|ZNF18 nc|ENSG00000154957|P17022-2|ZNF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8041381835938 2 547.302404 1092.59026 0.86084 0.00047114 1.7055 0.00093345 2.5664 0.0014046 547.8039229598862 65.785 0.38098 65.795 65.592 65.973 0.0095596 42 18 4 0 0 0 0.67481 1 36078 36078 19.439 2.4967 1 5858000 37125 6359 24675 25162 43731 43731 0.04766403424628152 LRKLPRPPHSR 11 Unmodified _LRKLPRPPHSR_ 0 0 0 ENST00000380599.8_1_17:7365719-7365791:-|nuORF ENST00000380599.8_1_17:7365719-7365791:-|nuORF ENST00000380599.8_1_17:7365719-7365791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.9489135742188 3 452.94935 1355.82622 0.88075 0.00039894 -1.4966 -0.00067789 -0.61585 -0.00027895 452.9485283064953 101.61 0.17316 95.432 95.33 95.503 -6.1757 23 8 4 0 0 0 0.73349 1 68196 68196 1.1098 0.96986 1 33810000 37126 12601 24676 25163 43732 43732 0.1625405159343245 LRKRIIETKRE 11 Unmodified _LRKRIIETKRE_ 0 0 0 REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1 REV__nc|ENSG00000158816|Q5TIE3-3|VWA5B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 721.4537963867188 2 721.451717 1440.88888 NaN NaN NaN NaN NaN NaN NaN 16.587 1 16.592 16.092 17.092 0.0050564 0 0 0 0.94307 1 8324 8324 0.30703 0.30703 1 + 37127 21444 24677 25164 43733 43733 0.18607152870981736 LRKRRYYRREE 11 Unmodified _LRKRRYYRREE_ 0 0 0 REV__ENSG00000110057|ENST00000227471|UNC93B1 REV__ENSG00000110057|ENST00000227471|UNC93B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.9608154296875 2 812.960772 1623.90699 NaN NaN NaN NaN NaN NaN NaN 94.701 1 94.716 94.216 95.216 0.014244 0 0 0 0.9435 1 52624 52624 0 0 1 + 37128 18687 24678 25165 43734 43734 0.11999287845674189 LRLARYKKNG 10 Unmodified _LRLARYKKNG_ 0 0 0 REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF REV__ENST00000470475.1_1_1:45241268-45242451:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8733520507812 2 609.875114 1217.73567 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.71 103.21 104.21 -0.048737 0 0 0 1.0024 1 57618 57618 0.40072 0 1 + 37129 20596 24679 25166 43735 43735 0.1355158254516482 LRLAVLAPLR 10 Unmodified _LRLAVLAPLR_ 0 0 0 REV__ENSG00000213171|ENST00000368820|LINGO4 REV__ENSG00000213171|ENST00000368820|LINGO4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3798828125 2 561.3795 1120.74445 NaN NaN NaN NaN NaN NaN NaN 105.91 1 105.87 105.37 106.37 -0.048103 0 0 0 1.0061 1 58711 58711 0 0 1 + 37130 24276 24680 25167 43736 43736 0.18890556181622742 LRLCHLIL 8 Unmodified _LRLCHLIL_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.8073120117188 2 490.807322 979.600092 0.084315 4.1382E-05 0.77667 0.0003812 0.86099 0.00042258 490.807647228541 85.322 0.63582 79.147 78.877 79.513 -6.1757 57 39 2 0 0 0 0.65867 3 56087 56087;56223;56355 20.871 0 1 17756000 37131 8365 24681 25168 43737;43738;43739 43737 0.1094759143002193 LRLFGEGP 8 Unmodified _LRLFGEGP_ 0 0 0 REV__ENST00000446564.5_1_7:43688238-43769078:-|nuORF REV__ENST00000446564.5_1_7:43688238-43769078:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.75048828125 2 444.750527 887.486502 0.31709 0.00014103 1.0163 0.00045201 1.3334 0.00059304 444.75056307457675 93.369 0.63794 87.194 86.726 87.364 -6.1757 61 45 2 0 0 0 0.57045 1 61759 61759 28.487 0 1 25420000 + 37132 25416 24682 25169 43740 43740 0.03825819588621471 LRLIQPVVPM 10 Unmodified _LRLIQPVVPM_ 0 0 0 REV__ENST00000481804.5_1_16:775346-776019:-|nuORF REV__ENST00000481804.5_1_16:775346-776019:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2420959472656 3 389.242372 1164.70529 0.73695 0.00028685 -0.72792 -0.00028334 0.0090299 3.5148E-06 389.2419920706954 63.82 0.48606 63.81 63.433 63.919 -0.010532 70 23 4 0 0 0 0.70951 2 34799 34799;34901 0.77653 0.078866 1 8949300 + 37133 27703 24683 25170 43741;43742 43741 0.1295208783576527 LRLIRQRIEK 10 Unmodified _LRLIRQRIEK_ 0 0 0 REV__ENSG00000180785|ENST00000396952|OR51E1 REV__ENSG00000180785|ENST00000396952|OR51E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.9315185546875 2 662.93042 1323.84629 1.2127 0.00080391 0.43603 0.00028906 1.6487 0.001093 662.9304831343652 105.03 0.1871 98.854 98.749 98.936 -6.1757 66 18 5 0 0 0 0.72464 1 70279 70279 0 0 1 1013199999.9999999 + 37134 23169 24684 25171 43743 43743 0.19731802533419796 LRLLEALLR 9 Unmodified _LRLLEALLR_ 0 0 0 ENSG00000204128|ENST00000373640|C2orf72 ENSG00000204128|ENST00000373640|C2orf72 ENSG00000204128|ENST00000373640|C2orf72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8639526367188 2 548.863683 1095.71281 0.34514 0.00018943 0.83027 0.0004557 1.1754 0.00064514 548.8641273834091 67.822 0.30873 67.84 67.668 67.976 0.018028 40 14 4 0 0 0 0.069655 1 37218 37218 40.239 4.627 1 9290800 37135 10243 24685 25172 43744 43744 0.16878563427690096 LRLLMRLF 8 Unmodified _LRLLMRLF_ 0 0 0 REV__nc|ENSG00000051180|Q06609-2|RAD51 REV__nc|ENSG00000051180|Q06609-2|RAD51 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.3367919921875 2 531.336247 1060.65794 NaN NaN NaN NaN NaN NaN NaN 67.592 1 67.592 67.092 68.092 0 0 0 0 0.97444 1 37692 37692 2.5775 0 1 + 37136 17265 24686 25173 43745 43745 0.1300385335541705 LRLNRNLSL 9 Unmodified _LRLNRNLSL_ 0 0 0 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.896728515625 3 366.896252 1097.66693 0.87254 0.00032013 0.88916 0.00032623 1.7617 0.00064636 366.8966497475479 16.802 0.20625 14.245 14.127 14.333 -2.557 93 35 3 0 0 0 0.43515 1 8692 8692 10.8 2.3552 1 21537000 + 37137 22022 24687 25174 43746 43746 0.12199918245482877 LRLPHGVHR 9 Unmodified _LRLPHGVHR_ 0 0 0 ENST00000331808.4_1_16:11035614-11036010:-|nuORF ENST00000331808.4_1_16:11035614-11036010:-|nuORF ENST00000331808.4_1_16:11035614-11036010:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.22314453125 3 362.22107 1083.64138 1.1885 0.00043051 2.6291 0.00095231 3.8176 0.0013828 362.2220878967046 44.054 0.2907 39.289 39.139 39.43 -4.7648 32 18 2 0 0 0 0.44883 1 26843 26843 10.151 5.9611 1 9745100 37138 11865 24688 25175 43747 43747 0.10290488513692253 LRLRDKPSYKR 11 Unmodified _LRLRDKPSYKR_ 0 0 0 REV__ENSG00000139174|ENST00000345127|PRICKLE1 REV__ENSG00000139174|ENST00000345127|PRICKLE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.9570007324219 3 477.956282 1430.84702 0.43045 0.00020573 -0.0083553 -3.9935E-06 0.42209 0.00020174 477.95642704457146 40.461 0.31546 40.466 40.256 40.571 0.0050583 31 14 3 0 0 0 0.69509 1 21518 21518 4.7159 0.59929 1 3007100 + 37139 20391 24689 25176 43748 43748 0.14882597182440804 LRLREELVYL 10 Unmodified _LRLREELVYL_ 0 0 0 ENST00000529121.2_1_11:61101211-61101412:+|nuORF ENST00000529121.2_1_11:61101211-61101412:+|nuORF ENST00000529121.2_1_11:61101211-61101412:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.392578125 2 652.390262 1302.76597 NaN NaN NaN NaN NaN NaN NaN 71.758 1 71.758 71.258 72.258 0 0 0 0 0.99514 1 39966 39966 1.1933 0 1 37140 14868 24690 25177 43749 43749 0.12669896419720317 LRLRPPLRAAT 11 Unmodified _LRLRPPLRAAT_ 0 0 0 ENST00000589114.5_1_18:33877702-34289359:+|nuORF ENST00000589114.5_1_18:33877702-34289359:+|nuORF ENST00000589114.5_1_18:33877702-34289359:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.4052124023438 2 632.404038 1262.79352 1.4076 0.00089016 0.082077 5.1906E-05 1.4897 0.00094207 632.4038468348449 105.06 0.23941 98.885 98.76 98.999 -6.1757 132 30 7 0 0 0 0.74203 1 70433 70433 0.30703 0 1 8315199999.999999 37141 15660 24691 25178 43750 43750 0.17263844470608092 LRLRRHLDF 9 Unmodified _LRLRRHLDF_ 0 0 0 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 ENSG00000213171|ENST00000368820|LINGO4 MSMS AL20221201_MKP_PDAC_01 4 613.3668212890625 2 613.367456 1224.72036 NaN NaN NaN NaN NaN NaN NaN 106.16 1 99.982 99.482 100.48 -6.1757 0 0 0 0.84564 1 71075 71075 2.0598 1.4583 1 37142 10424 24692 25179 43751 43751 0.11698715747957067 LRLRRIDGY 9 Unmodified _LRLRRIDGY_ 0 0 0 REV__ENSG00000184209|ENST00000526639|SNRNP35 REV__ENSG00000184209|ENST00000526639|SNRNP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.9004821777344 3 387.899885 1160.67783 0.69624 0.00027007 0.028672 1.1122E-05 0.72491 0.00028119 387.8999109041397 57.546 0.33626 57.48 57.277 57.614 -0.066036 45 16 4 0 0 0 0.55373 1 31286 31286 4.1895 0 1 7257100 + 37143 23406 24693 25180 43752 43752 0.10391320619737598 LRLSIYQF 8 Unmodified _LRLSIYQF_ 0 0 0 REV__ENSG00000138678|ENST00000264409|GPAT3 REV__ENSG00000138678|ENST00000264409|GPAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7568969726562 2 520.300384 1038.58622 0.4692 0.00024412 0.64138 0.00033371 1.1106 0.00057783 520.3009370073751 68.284 0.39391 68.309 68.188 68.582 0.025146 36 19 2 0 0 0 8.7369 1 37640 37640 8.5933 0 1 1141500 + 37144 20354 24694 25181 43753 43753 0.06846637202556849 LRLYKHAKRPK 11 Unmodified _LRLYKHAKRPK_ 0 0 0 REV__ENST00000490741.1_1_22:39529898-39530769:-|nuORF REV__ENST00000490741.1_1_22:39529898-39530769:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.307861328125 3 470.63325 1408.87792 -0.71507 -0.00033654 -0.60594 -0.00028517 -1.321 -0.00062171 470.63284698877214 103.25 0.1686 103.2 103.14 103.31 -0.047928 9 6 2 0 0 0 0.30605 1 57327 57327 0 0 1 609990 + 37145 18041 24695 25182 43754 43754 0.18983795287317662 LRMAMRLFK 9 Unmodified _LRMAMRLFK_ 0 0 0 REV__ENST00000405154.6_1_12:26223204-26223318:+|nuORF REV__ENST00000405154.6_1_12:26223204-26223318:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2279968261719 3 389.228068 1164.66237 NaN NaN NaN NaN NaN NaN NaN 12.563 1 12.573 12.073 13.073 0.0096512 0 0 0 0.8622 1 6196 6196 0 0 1 + 37146 26642 24696 25183 43755 43755 0.08662994506653376 LRMKSVRLF 9 Unmodified _LRMKSVRLF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9020690917969 3 383.902349 1148.68522 0.69509 0.00026685 -1.2129 -0.00046565 -0.51785 -0.0001988 383.901555036878 76.973 0.86151 70.798 70.411 71.273 -6.1757 84 47 2 0 0 0 0.21589 1 50134 50134 21.59 4.1475 1 16540000 + 37147 22751 24697 25184 43756 43756 0.11682336895796652 LRMWRYQF 8 Unmodified _LRMWRYQF_ 0 0 0 ENST00000278671.9_1_11:71808557-71808611:-|nuORF;ENST00000544594.5_1_11:71808415-71808610:-|nuORF ENST00000278671.9_1_11:71808557-71808611:-|nuORF ENST00000278671.9_1_11:71808557-71808611:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2292785644531 3 400.542933 1198.60697 -0.084558 -3.3869E-05 -4.2542 -0.001704 -4.3387 -0.0017379 400.8751146448648 19.125 0.11278 19.133 19.063 19.176 0.0078487 8 5 2 0 0 0 0.80992 1 9731 9731 0.40072 0.1317 1 310010 37148 11399 24698 25185 43757 43757 0.015609043105541787 LRNGCFWSLF 10 Unmodified _LRNGCFWSLF_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MSMS AL20221201_MKP_PDAC_01 4 621.8110961914062 2 621.808051 1241.60155 NaN NaN NaN NaN NaN NaN NaN 77.843 1 71.667 71.167 72.167 -6.1757 0 0 0 0.57227 1 50932 50932 22.736 6.8891 1 + 37149 24477 24699 25186 43758 43758 -0.009588192719093058 LRPAVERLEL 10 Unmodified _LRPAVERLEL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.361328125 2 598.361505 1194.70846 0.52959 0.00031688 -0.94821 -0.00056737 -0.41862 -0.00025049 598.3610148519061 52.577 0.23376 52.143 52.003 52.237 -0.43367 26 11 3 0 0 0 0.5933 1 28390 28390 11.495 1.3441 1 4358000 37150 4022 24700 25187 43759 43759 0.11889054214157113 LRPEAGGLRL 10 Unmodified _LRPEAGGLRL_ 0 0 0 REV__ENSG00000154118|ENST00000284262|JPH3 REV__ENSG00000154118|ENST00000284262|JPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2203674316406 3 361.220735 1080.64038 -0.13062 -4.7183E-05 0.04475 1.6165E-05 -0.08587 -3.1018E-05 361.2208425565739 35.422 0.25155 35.446 35.306 35.558 0.024967 24 11 3 0 0 0 0.1899 1 18692 18692 30.431 0 1 7805400 + 37151 21206 24701 25188 43760 43760 0.10328229354126961 LRPEAGGLRL 10 Unmodified _LRPEAGGLRL_ 0 0 0 REV__ENSG00000154118|ENST00000284262|JPH3 REV__ENSG00000154118|ENST00000284262|JPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2212524414062 3 361.220735 1080.64038 1.5518 0.00056053 0.14129 5.1036E-05 1.6931 0.00061157 361.2207971185837 39.336 0.52413 34.885 34.632 35.156 -4.4509 99 32 4 0 0 0 0.46077 1 23480 23480 16.275 0 1 213910000 + 37152 21206 24701 25188 43761 43761 0.10328229354126961 LRPGTALVL 9 Unmodified _LRPGTALVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.302734375 2 470.302927 938.591301 0.20049 9.4289E-05 0.12338 5.8024E-05 0.32386 0.00015231 470.30288413966923 54.77 0.24395 54.703 54.56 54.804 -0.066936 18 11 2 0 0 0 0.28023 1 29730 29730 18.146 0 1 1527100 37153 10835 24702 25189 43762 43762 0.1195494106515298 LRPIFCCIHF 10 Unmodified _LRPIFCCIHF_ 0 0 0 ENSG00000168930|ENST00000329758|TRIM49;ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B ENSG00000168930|ENST00000329758|TRIM49 ENSG00000168930|ENST00000329758|TRIM49 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2007751464844 3 416.88419 1247.63074 0.33404 0.00013925 -2.008 -0.0008371 -1.674 -0.00069785 416.8835253357319 40.524 0.23054 40.529 40.402 40.633 0.0050545 22 10 3 0 0 0 0.23922 1 21576 21576 3.8763 0.88109 1 2168500 37154 7817 24703 25190 43763 43763 0.016830017527354357 LRPPDFWRA 9 Unmodified _LRPPDFWRA_ 0 0 0 ENST00000461007.6_1_X:155253028-155253199:+|nuORF ENST00000461007.6_1_X:155253028-155253199:+|nuORF ENST00000461007.6_1_X:155253028-155253199:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3150634765625 2 579.314358 1156.61416 0.42468 0.00024602 -0.5214 -0.00030205 -0.09672 -5.6032E-05 579.3139961477189 95.182 0.3493 94.814 94.619 94.968 -0.36815 29 17 2 0 0 0 0.61381 1 52059 52059 0.52476 0.066424 1 835690 37155 13648 24704 25191 43764 43764 0.04211960182669827 LRPPFLGVPS 10 Unmodified _LRPPFLGVPS_ 0 0 0 nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11;nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;SAMD11|p.V545Rfs*3|1|0.04|ENSG00000187634|chr1:943319-943320|-/A|frameshift_variant;ENSG00000187634|ENST00000616016|SAMD11;ENST00000466827.1_1_1:877519-877869:+|nuORF nc|ENSG00000187634|Q96NU1-1|SAMD11 nc|ENSG00000187634|Q96NU1-1|SAMD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5496826171875 3 361.550082 1081.62842 0.056967 2.0596E-05 0.97238 0.00035156 1.0293 0.00037216 361.5503033373041 51.164 0.48006 51.111 50.766 51.246 -0.053871 38 23 2 0 0 0 0.71042 1 27717 27717 1.7423 0 1 1347600 37156 9575 24705 25192 43765 43765 0.09086612610940392 LRPSLALSR 9 Unmodified _LRPSLALSR_ 0 0 0 REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF REV__ENST00000599253.1_1_19:48248882-48249496:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8173217773438 2 506.816733 1011.61891 0.77283 0.00039168 -0.84553 -0.00042853 -0.072697 -3.6844E-05 506.81631981860494 34.608 0.42317 30.513 30.348 30.771 -4.0951 41 22 2 0 0 0 0.49766 1 19950 19950 7.609 0 1 14747000 + 37157 29240 24706 25193 43766 43766 0.11356844325393922 LRPSPDRKFGL 11 Unmodified _LRPSPDRKFGL_ 0 0 0 REV__ENST00000342147.4_1_16:10641346-10674430:-|nuORF REV__ENST00000342147.4_1_16:10641346-10674430:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2510681152344 3 429.250695 1284.73025 0.66899 0.00028717 -0.38469 -0.00016513 0.2843 0.00012204 429.2505448479937 52.783 0.37869 52.719 52.522 52.901 -0.063423 66 18 5 0 0 0 0.62338 1 28558 28558 5.5233 0.32485 1 66463000 + 37158 25714 24707 25194 43767 43767 0.09927858962691971 LRQECCKF 8 Unmodified _LRQECCKF_ 0 0 0 REV__ENST00000549639.1_2_12:95928028-95942314:-|nuORF REV__ENST00000549639.1_2_12:95928028-95942314:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8192138671875 2 513.746605 1025.47866 0.50524 0.00025957 0.26352 0.00013538 0.76877 0.00039495 513.746992559275 67.767 0.35762 67.285 67.075 67.432 -0.48218 26 15 2 0 0 0 8.7369 1 36971 36971 16.942 12.613 1 1725500 + 37159 28547 24708 25195 43768 43768 -0.03306398994823212 LRQERHRKFRE 11 Unmodified _LRQERHRKFRE_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.939697265625 2 777.939839 1553.86513 NaN NaN NaN NaN NaN NaN NaN 17.546 1 17.551 17.051 18.051 0.0050564 0 0 0 0.9435 1 8855 8855 0 0 1 37160 6657 24709 25196 43769 43769 0.11034732157122562 LRQGKPYIRSL 11 Unmodified _LRQGKPYIRSL_ 0 0 0 REV__ENST00000608689.5_2_20:39801092-39811607:+|nuORF REV__ENST00000608689.5_2_20:39801092-39811607:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2701721191406 3 444.269978 1329.7881 0.98529 0.00043773 0.23136 0.00010278 1.2166 0.00054052 444.27013517014854 42.933 0.4365 38.249 37.994 38.431 -4.6846 83 27 4 0 0 0 0.66568 1 25929 25929 7.4771 0.43998 1 41783000 + 37161 19424 24710 25197 43770 43770 0.13640120888112506 LRQKYLERI 9 Unmodified _LRQKYLERI_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8701782226562 2 609.869497 1217.72444 1.2937 0.00078899 -0.18597 -0.00011342 1.1077 0.00067557 609.8696032145713 35.926 0.18962 31.734 31.664 31.853 -4.1928 17 11 2 0 0 0 0.21589 1 20949 20949 22.736 1.1993 1 3770900 + 37162 17021 24711 25198 43771 43771 0.1242876045103003 LRQLAMIQN 9 Unmodified _LRQLAMIQN_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8103637695312 2 543.808051 1085.60155 0.62369 0.00033917 1.4221 0.00077334 2.0458 0.0011125 543.8085872237393 49.379 0.30017 49.336 49.155 49.456 -0.04369 32 14 3 0 0 0 0.10734 1 26665 26665 32.305 8.2849 1 3912500 + 37163 22278 24712 25199 43772 43772 0.06217180728117455 LRQLDTSL 8 Unmodified _LRQLDTSL_ 0 0 0 REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2723083496094 2 473.271824 944.529095 1.2005 0.00056818 -0.70869 -0.0003354 0.49185 0.00023278 473.27145620955605 37.483 0.38051 33.199 32.991 33.371 -4.2835 56 22 3 0 0 0 0.34916 1 22056 22056 49.933 0.37871 1 31182000 + 37164 27833 24713 25200 43773 43773 0.054611699261727153 LRQLRDHL 8 Unmodified _LRQLRDHL_ 0 0 0 ENSG00000163945|ENST00000389851|UVSSA;nc|ENSG00000163945|Q2YD98-2|UVSSA ENSG00000163945|ENST00000389851|UVSSA ENSG00000163945|ENST00000389851|UVSSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8773803710938 3 350.87708 1049.60941 -0.061298 -2.1508E-05 -0.26481 -9.2916E-05 -0.32611 -0.00011442 350.87694534927374 17.202 0.10905 17.207 17.132 17.241 0.0050564 11 7 2 0 0 0 0.78809 1 8665 8665 9.3831 0 1 847340 37165 7102 24714 25201 43774 43774 0.08659076039862157 LRQLREKRP 9 Unmodified _LRQLREKRP_ 0 0 0 ENST00000480137.1_1_7:128450376-128461960:+|nuORF;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136 ENST00000480137.1_1_7:128450376-128461960:+|nuORF ENST00000480137.1_1_7:128450376-128461960:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.2510681152344 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 1.4161 1 -1.0659 -1.5659 -0.56588 -2.482 0 0 0 0.86004 1 733 733 0.26902 0 1 37166 4076 24715 25202 43775 43775 0.14134698402403956 LRQLREKRP 9 Unmodified _LRQLREKRP_ 0 0 0 ENST00000480137.1_1_7:128450376-128461960:+|nuORF;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136 ENST00000480137.1_1_7:128450376-128461960:+|nuORF ENST00000480137.1_1_7:128450376-128461960:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.2513427734375 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 9.069 1 6.5871 6.0871 7.0871 -2.482 0 0 0 0.86004 1 4574 4574 0.26902 0 1 37167 4076 24715 25202 43776 43776 0.14134698402403956 LRQNDHPGYCI 11 Unmodified _LRQNDHPGYCI_ 0 0 0 REV__nc|ENSG00000185917|Q9NVD3-4|SETD4 REV__nc|ENSG00000185917|Q9NVD3-4|SETD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.3143920898438 2 658.314229 1314.6139 0.38455 0.00025315 -2.2701 -0.0014944 -1.8856 -0.0012413 658.3128511611524 60.237 0.25144 60.237 60.094 60.345 0 18 10 2 0 0 0 0.39949 1 33601 33601 21.537 1.1224 1 1048100 + 37168 23533 24716 25203 43777 43777 -0.030818275994988653 LRQPRPAL 8 Unmodified _LRQPRPAL_ 0 0 0 ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF ENSG00000087338|ENST00000282570|GMCL1 ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.7984008789062 2 475.798343 949.582134 0.24898 0.00011847 -0.060686 -2.8874E-05 0.1883 8.9591E-05 475.7982543935575 43.745 0.18596 43.729 43.594 43.78 -0.015671 12 8 2 0 0 0 0.6895 1 23451 23451 18.135 0 1 17071000 37169 1468 24717 25204 43778 43778 0.10532592499498605 LRQPRPAL 8 Unmodified _LRQPRPAL_ 0 0 0 ENSG00000087338|ENST00000282570|GMCL1;ENST00000468386.2_1_2:70057024-70067283:+|nuORF ENSG00000087338|ENST00000282570|GMCL1 ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7981567382812 2 475.798343 949.582134 0.83511 0.00039734 0.070049 3.3329E-05 0.90516 0.00043067 475.79827400006064 80.313 0.53233 74.138 73.858 74.391 -6.1757 39 30 2 0 0 0 0.67481 1 52655 52655 19.439 0 1 27605000 37170 1468 24717 25204 43779 43779 0.10532592499498605 LRQQDKRCWAI 11 Unmodified _LRQQDKRCWAI_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 708.8806762695312 2 708.88007 1415.74559 0.94086 0.00066696 -0.031182 -2.2105E-05 0.90968 0.00064485 708.8799714202122 96.073 0.824 89.898 89.446 90.27 -6.1757 125 50 3 0 0 0 0.42108 1 63412 63412 20.415 3.3016 1 33683000 + 37171 20661 24718 25205 43780 43780 0.05434402488253909 LRQRKLAPLF 10 Unmodified _LRQRKLAPLF_ 0 0 0 REV__nc|ENSG00000172530|Q8N9N5-3|BANP REV__nc|ENSG00000172530|Q8N9N5-3|BANP MSMS AL20221201_MKP_PDAC_01 4 621.396240234375 2 621.395682 1240.77681 NaN NaN NaN NaN NaN NaN NaN 106.66 1 100.48 99.983 100.98 -6.1757 0 0 0 1.0019 1 71385 71385 0.45834 0 1 + 37172 29786 24719 25206 43781 43781 0.16605343584615184 LRQRQPLRRRR 11 Unmodified _LRQRQPLRRRR_ 0 0 0 REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 767.9832153320312 2 767.984915 1533.95528 NaN NaN NaN NaN NaN NaN NaN 96.395 1 96.395 95.895 96.895 0 0 0 0 0.9435 1 53270 53270 0 0 1 + 37173 25604 24720 25207 43782 43782 0.20965826276210464 LRQRRRRRKQP 11 Unmodified _LRQRRRRRKQP_ 0 0 0 ENST00000477957.1_1_1:229743577-229761715:-|nuORF ENST00000477957.1_1_1:229743577-229761715:-|nuORF ENST00000477957.1_1_1:229743577-229761715:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 775.4891357421875 2 775.490365 1548.96618 NaN NaN NaN NaN NaN NaN NaN 95.382 1 95.382 94.882 95.882 0 0 0 0 0.9435 1 52722 52722 0 0 1 37174 14004 24721 25208 43783 43783 0.2136522865050665 LRQVRAAL 8 Unmodified _LRQVRAAL_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7988891601562 2 463.798343 925.582134 -0.12354 -5.7295E-05 0.5602 0.00025982 0.43667 0.00020253 463.798597781262 36.217 0.27888 36.242 36.117 36.396 0.024971 33 11 4 0 0 0 0.46494 1 19160 19160 38.151 0 1 16546000 37175 349 24722 25209 43784 43784 0.11636592499496601 LRQVRAAL 8 Unmodified _LRQVRAAL_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7987670898438 2 463.798343 925.582134 1.092 0.00050646 -0.18582 -8.6185E-05 0.90615 0.00042027 463.7982609785225 40.769 0.50972 36.24 36.001 36.511 -4.5294 82 31 3 0 0 0 0.67481 1 24411 24411 19.439 0 1 88625000 37176 349 24722 25209 43785 43785 0.11636592499496601 LRRAPKFL 8 Unmodified _LRRAPKFL_ 0 0 0 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 ENSG00000100077|ENST00000324198|GRK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.825439453125 2 500.824361 999.634169 0.97317 0.00048739 -0.19926 -9.9792E-05 0.77392 0.0003876 500.82417775284705 33.322 0.27735 29.337 29.192 29.469 -3.9853 22 15 2 0 0 0 0.72953 1 19071 19071 14.582 0 1 12610000 37177 1749 24723 25210 43786 43786 0.13433755913251844 LRRARGIRLFR 11 Unmodified _LRRARGIRLFR_ 0 0 0 REV__ENST00000570867.5_1_17:1945902-1946052:+|nuORF REV__ENST00000570867.5_1_17:1945902-1946052:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.4535522460938 2 707.454928 1412.8953 1.274 0.0009013 -0.46125 -0.00032631 0.81275 0.00057499 707.4546646082969 105.59 0.37698 99.411 99.309 99.686 -6.1757 91 31 4 0 0 0 0.74203 1 70715 70715 0.30703 0 1 32485000 + 37178 28974 24724 25211 43787 43787 0.20537135612994462 LRREPLLLL 9 Unmodified _LRREPLLLL_ 0 0 0 REV__ENST00000562365.2_1_19:44085322-44085733:+|nuORF REV__ENST00000562365.2_1_19:44085322-44085733:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.9168395996094 3 374.916764 1121.72846 0.27262 0.00010221 -0.12086 -4.5311E-05 0.15177 5.69E-05 374.9166250462825 62.535 0.39441 62.514 62.284 62.678 -0.021618 48 20 3 0 0 0 0.36964 1 34234 34234 18.373 9.3968 1 37466000 + 37179 28858 24725 25212 43788 43788 0.1724684994474046 LRRERRRRRRP 11 Unmodified _LRRERRRRRRP_ 0 0 0 REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF REV__ENST00000254998.2_1_20:23331374-23334728:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.0042114257812 2 804.006713 1605.99887 NaN NaN NaN NaN NaN NaN NaN 90.199 1 90.241 89.741 90.741 0.042175 0 0 0 0.9435 1 50176 50176 0 0 1 + 37180 24909 24726 25213 43789 43789 0.22011435773356425 LRRGRPKRRRK 11 Unmodified _LRRGRPKRRRK_ 0 0 0 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 739.9893798828125 2 739.990001 1477.96545 NaN NaN NaN NaN NaN NaN NaN 94.226 1 94.24 93.74 94.74 0.014244 0 0 0 0.94307 1 52369 52369 0.30703 0.30703 1 37181 7990 24727 25214 43790 43790 0.2455843400143749 LRRIILLQRWF 11 Unmodified _LRRIILLQRWF_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 757.4786987304688 2 757.477537 1512.94052 0.63986 0.00048468 0.76771 0.00058152 1.4076 0.0010662 757.478082013398 85.709 0.43146 79.533 79.277 79.709 -6.1757 39 24 2 0 0 0 0.74157 2 56393 56393;56528 0.35063 0.35063 1 40726000 37182 945 24728 25215 43791;43792 43791 0.20456941355541858 LRRKFPLIILH 11 Unmodified _LRRKFPLIILH_ 0 0 0 REV__ENSG00000163328|ENST00000392552|GPR155 REV__ENSG00000163328|ENST00000392552|GPR155 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.4617309570312 2 703.461356 1404.90816 NaN NaN NaN NaN NaN NaN NaN 15.719 1 15.725 15.225 16.225 0.0057774 0 0 0 0.9435 1 7847 7847 0 0 1 + 37183 21748 24729 25216 43793 43793 0.22190153952556102 LRRKGLIRLP 10 Unmodified _LRRKGLIRLP_ 0 0 0 ENST00000513986.1_1_5:124082024-124082123:-|nuORF ENST00000513986.1_1_5:124082024-124082123:-|nuORF ENST00000513986.1_1_5:124082024-124082123:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.416015625 2 611.416949 1220.81934 -0.38553 -0.00023572 2.5169 0.0015389 2.1314 0.0013031 611.418936561215 103.79 0.13332 103.75 103.64 103.78 -0.048737 8 5 2 0 0 0 0.72247 1 57653 57653 0.40072 0 1 2001600 37184 14646 24730 25217 43794 43794 0.21776738712878796 LRRKRRRMFRR 11 Unmodified _LRRKRRRMFRR_ 0 0 0 REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF REV__ENST00000391975.5_1_2:242194961-242195633:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.0070190429688 2 816.01041 1630.00627 NaN NaN NaN NaN NaN NaN NaN 95.971 1 95.971 95.471 96.471 0 0 0 0 0.9435 1 53039 53039 0 0 1 + 37185 26378 24731 25218 43795 43795 0.216464520494128 LRRKYVLKLEK 11 Unmodified _LRRKYVLKLEK_ 0 0 0 REV__ENST00000444408.1_1_2:224640835-224702600:-|nuORF REV__ENST00000444408.1_1_2:224640835-224702600:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.46923828125 2 723.469378 1444.9242 1.3929 0.0010077 -0.093934 -6.7959E-05 1.299 0.00093979 723.46986346677 104.57 0.079483 98.393 98.338 98.417 -6.1757 6 4 2 0 0 0 0.7453 1 70028 70028 0 0 1 8679300 + 37186 27122 24732 25219 43796 43796 0.2195381539875143 LRRLEHEKRRK 11 Unmodified _LRRLEHEKRRK_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45 ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 760.9636840820312 2 760.965857 1519.91716 0.14346 0.00010917 -0.78655 -0.00059854 -0.64309 -0.00048937 761.4666587563875 85.181 0.4212 79.005 78.837 79.259 -6.1757 44 26 3 0 0 0 0.7453 2 56042 56042;56165 0 0 1 55360000 37187 8905 24733 25220 43797;43798 43797 0.17799895570897206 LRRLLKRPE 9 Unmodified _LRRLLKRPE_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.6320190429688 2 590.885481 1179.75641 NaN NaN NaN NaN NaN NaN NaN 104.32 1 104.27 103.77 104.77 -0.048737 0 0 0 0.84737 1 57917 57917 1.8442 0 1 37188 6807 24734 25221 43799 43799 0.17372172924842744 LRRLLLRY 8 Unmodified _LRRLLLRY_ 0 0 0 REV__ENSG00000006607|ENST00000264042|FARP2 REV__ENSG00000006607|ENST00000264042|FARP2 MSMS AL20221201_MKP_PDAC_01 4 368.2446594238281 3 368.245104 1101.71348 NaN NaN NaN NaN NaN NaN NaN 52.133 1 46.399 45.899 46.899 -5.7345 0 0 0 0.97444 1 32889 32889 1.6526 0 1 + 37189 16992 24735 25222 43800 43800 0.166694028674101 LRRLRWYFFTR 11 Unmodified _LRRLRWYFFTR_ 0 0 0 REV__nc|ENSG00000278540|Q13085-3|ACACA REV__nc|ENSG00000278540|Q13085-3|ACACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.4622192382812 2 807.462419 1612.91028 NaN NaN NaN NaN NaN NaN NaN 70.304 1 70.304 69.804 70.804 0 0 0 0 0.9435 1 39173 39173 0 0 1 + 37190 24673 24736 25223 43801 43801 0.12834582690311436 LRRPGALLL 9 Unmodified _LRRPGALLL_ 0 0 0 ENST00000449949.5_1_21:43414155-43429688:-|nuORF ENST00000449949.5_1_21:43414155-43429688:-|nuORF ENST00000449949.5_1_21:43414155-43429688:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8382263183594 2 504.837468 1007.66038 1.2582 0.00063518 0.18587 9.3835E-05 1.4441 0.00072901 504.8375913062468 94.412 0.32655 88.236 88.045 88.372 -6.1757 41 18 3 0 0 0 0.2143 1 62598 62598 21.747 3.6117 1 40669000 37191 13508 24737 25224 43802 43802 0.15686025084755784 LRRPGQLI 8 Unmodified _LRRPGQLI_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;ENST00000473866.1_1_10:108338843-108339191:-|nuORF nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.8064880371094 2 476.806168 951.597784 -0.23606 -0.00011255 -0.17133 -8.169E-05 -0.40739 -0.00019424 476.80579141252605 36.454 0.23606 36.476 36.323 36.559 0.021545 14 10 2 0 0 0 0.65867 1 19319 19319 20.871 0 1 1689600 37192 16109 24738 25225 43803 43803 0.12004879016558334 LRRPPPYF 8 Unmodified _LRRPPPYF_ 0 0 0 ENST00000380117.5_1_9:23826210-23826282:-|nuORF ENST00000380117.5_1_9:23826210-23826282:-|nuORF ENST00000380117.5_1_9:23826210-23826282:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.3016357421875 2 523.300719 1044.58688 NaN NaN NaN NaN NaN NaN NaN 93.108 1 93.108 92.608 93.608 0 0 0 0 0.97444 1 51480 51480 0.79363 0 1 37193 12589 24739 25226 43804 43804 0.06637476642254114 LRRPTQAL 8 Unmodified _LRRPTQAL_ 0 0 0 REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7957763671875 2 477.795801 953.577048 0.56551 0.0002702 -0.30444 -0.00014546 0.26108 0.00012474 477.79557203999383 52.235 0.20097 52.176 52.047 52.248 -0.058914 15 9 2 0 0 0 0.80232 1 28303 28303 5.2307 0 1 1278400 + 37194 26296 24740 25227 43805 43805 0.09840288636871719 LRRPYVTCQ 9 Unmodified _LRRPYVTCQ_ 0 0 0 nc|ENSG00000054796|Q9Y5K1-2|SPO11;ENSG00000054796|ENST00000371263|SPO11 nc|ENSG00000054796|Q9Y5K1-2|SPO11 nc|ENSG00000054796|Q9Y5K1-2|SPO11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2059631347656 3 379.206209 1134.5968 NaN NaN NaN NaN NaN NaN NaN 17.581 1 17.594 17.094 18.094 0.013865 0 0 0 0.85798 1 8753 8753 0.23584 0.076522 1 37195 766 24741 25228 43806 43806 0.034882965853284986 LRRQDDHY 8 Unmodified _LRRQDDHY_ 0 0 0 REV__ENSG00000214711|ENST00000403897|CAPN14 REV__ENSG00000214711|ENST00000403897|CAPN14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.771728515625 2 551.773054 1101.53155 NaN NaN NaN NaN NaN NaN NaN 21.823 1 21.823 21.323 22.323 0 0 0 0 0.97444 1 11073 11073 2.8892 0 1 + 37196 24321 24742 25229 43807 43807 -0.015149816161510898 LRRQEESL 8 Unmodified _LRRQEESL_ 0 0 0 REV__nc|ENSG00000174521|Q8N6N2-2|TTC9B REV__nc|ENSG00000174521|Q8N6N2-2|TTC9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2821655273438 2 515.78563 1029.55671 1.4908 0.00076893 1.8838 0.00097166 3.3746 0.0017406 515.7872488407443 47.681 0.67369 42.447 42.197 42.87 -5.2339 93 40 3 0 0 0 0.46677 1 29801 29801 37.974 1.847 1 78851000 + 37197 22799 24743 25230 43808 43808 0.04311073186431713 LRRQEVHL 8 Unmodified _LRRQEVHL_ 0 0 0 nc|ENSG00000162493|Q86YL7-2|PDPN nc|ENSG00000162493|Q86YL7-2|PDPN nc|ENSG00000162493|Q86YL7-2|PDPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8776245117188 3 350.87708 1049.60941 1.4067 0.00049358 0.17669 6.1997E-05 1.5834 0.00055558 350.87715658482045 18.385 0.26787 15.764 15.638 15.906 -2.6215 59 23 3 0 0 0 0.63706 1 9656 9656 22.736 0 1 9661400 37198 16320 24744 25231 43809 43809 0.08659076039884894 LRRQQMMQQ 9 Unmodified _LRRQQMMQQ_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.878662109375 3 406.877986 1217.61213 NaN NaN NaN NaN NaN NaN NaN 11.09 1 11.09 10.59 11.59 0 0 0 0 0.85798 1 5260 5260 0.23584 0.095952 1 37199 1813 24745 25232 43810 43810 0.012028401108864273 LRRRARDSETL 11 Unmodified _LRRRARDSETL_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.865966796875 2 686.892023 1371.76949 NaN NaN NaN NaN NaN NaN NaN 16.27 1 16.275 15.775 16.775 0.0050564 0 0 0 0.94307 1 8151 8151 0.30703 0.30703 1 + 37200 21612 24746 25233 43811 43811 0.09847959246258142 LRRRFRENLIY 11 Unmodified _LRRRFRENLIY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.7283935546875 4 384.728392 1534.88446 0.57433 0.00022096 0.50334 0.00019365 1.0777 0.00041461 384.72888020265566 14.414 0.054806 11.911 11.878 11.933 -2.5029 14 9 2 0 0 0 0.74442 1 7325 7325 0.08335 0 1 2211400 37201 10015 24747 25234 43812 43812 0.1384168844811029 LRRRLRRFLFL 11 Unmodified _LRRRLRRFLFL_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 773.5003662109375 2 773.501878 1544.9892 NaN NaN NaN NaN NaN NaN NaN 104.25 1 98.074 97.574 98.574 -6.1757 0 0 0 0.9435 1 69829 69829 0 0 1 + 37202 26016 24748 25235 43813 43813 0.23850854715283276 LRRRPLSSI 9 Unmodified _LRRRPLSSI_ 0 0 0 REV__ENSG00000261587|ENST00000696146|TMEM249 REV__ENSG00000261587|ENST00000696146|TMEM249 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5687866210938 3 366.568247 1096.68291 0.091466 3.3529E-05 0.65161 0.00023886 0.74308 0.00027239 366.5684532110203 22.131 0.19134 22.145 22.04 22.232 0.013796 12 7 2 0 0 0 0.4887 1 11364 11364 8.1555 0 1 1473300 + 37203 24585 24749 25236 43814 43814 0.13843624482365158 LRRRRRPRRQW 11 Unmodified _LRRRRRPRRQW_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 818.5064697265625 2 818.503807 1634.99306 NaN NaN NaN NaN NaN NaN NaN 63.407 1 62.92 62.42 63.42 -0.48617 0 0 0 0.9435 1 34579 34579 0 0 1 37204 11488 24750 25237 43815 43815 0.20096337261702502 LRRRWCRRRFR 11 Unmodified _LRRRWCRRRFR_ 0 0 0 REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.985107421875 2 830.986935 1659.95932 NaN NaN NaN NaN NaN NaN NaN 88.279 1 88.279 87.779 88.779 0 0 0 0 0.9435 1 48867 48867 0 0 1 + 37205 24495 24751 25238 43816 43816 0.15573592498253674 LRRRWRRRRWG 11 Unmodified _LRRRWRRRRWG_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.4946899414062 2 827.498524 1652.9825 NaN NaN NaN NaN NaN NaN NaN 62.806 1 62.32 61.82 62.82 -0.48617 0 0 0 0.9435 1 34240 34240 0 0 1 + 37206 29226 24752 25239 43817 43817 0.18212354607248926 LRRRWWRREVE 11 Unmodified _LRRRWWRREVE_ 0 0 0 REV__ENST00000284971.7_1_21:27102007-27107256:-|nuORF REV__ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.7367248535156 4 411.235379 1640.91241 -0.067694 -2.7838E-05 -0.32984 -0.00013564 -0.39753 -0.00016348 411.23513565860486 21.023 0.12848 21.034 20.959 21.088 0.010551 15 10 2 0 0 0 0.30605 1 10767 10767 0 0 1 2807400 + 37207 25213 24753 25240 43818 43818 0.11759011428148369 LRRSAPVP 8 Unmodified _LRRSAPVP_ 0 0 0 ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF ENST00000348159.8_1_1:156453152-156470609:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2769775390625 2 448.277244 894.539935 NaN NaN NaN NaN NaN NaN NaN 41.627 1 41.625 41.125 42.125 -0.0017929 0 0 0 0.83301 1 22256 22256 21.747 0 1 37208 12037 24754 25241 43819 43819 0.08844617091131113 LRRSEPRSL 9 Unmodified _LRRSEPRSL_ 0 0 0 REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8878173828125 3 371.887756 1112.64144 0.088817 3.303E-05 -0.18952 -7.0479E-05 -0.1007 -3.7449E-05 371.8876195687764 20.942 0.25421 20.952 20.8 21.055 0.010553 36 16 3 0 0 0 0.45045 1 10666 10666 6.6304 0.43853 1 7193800 + 37209 25829 24755 25242 43820 43820 0.08962443723044089 LRRSEPRSL 9 Unmodified _LRRSEPRSL_ 0 0 0 REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8893432617188 3 371.887756 1112.64144 0.74814 0.00027822 1.1575 0.00043048 1.9057 0.0007087 371.8885009669636 23.613 1.0772 20.785 20.332 21.41 -2.8273 137 73 4 0 0 0 0.5029 1 12717 12717 7.609 0 1 53970000 + 37210 25829 24755 25242 43821 43821 0.08962443723044089 LRRSEPRSL 9 Unmodified _LRRSEPRSL_ 0 0 0 REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF REV__ENST00000356785.4_1_10:26727685-26781263:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 371.887756 1112.64144 0.088817 3.303E-05 -0.18952 -7.0479E-05 -0.1007 -3.7449E-05 371.8876195687764 20.942 0.25421 20.952 20.8 21.055 0.010553 0.083359 -0.00075343 NaN 6.6304 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7193800 + 37211 25829 24755 25242 0.08962443723044089 LRRVENSI 8 Unmodified _LRRVENSI_ 0 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7917175292969 2 493.790715 985.566878 NaN NaN NaN NaN NaN NaN NaN 21.549 1 21.563 21.063 22.063 0.013796 0 0 0 0.94494 1 11043 11043 11.64 0 1 + 37212 155 24756 25243 43822 43822 0.07351680911654057 LRRVKKDV 8 Unmodified _LRRVKKDV_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MSMS AL20221201_MKP_PDAC_01 4 507.3319396972656 2 507.33255 1012.65055 NaN NaN NaN NaN NaN NaN NaN 105.67 1 99.493 98.993 99.993 -6.1757 0 0 0 0.97444 1 70786 70786 2.0598 1.2661 1 37213 8341;6281 24757 25244 43823 43823 0.1447283707935867 LRRVQPLMKQE 11 Unmodified _LRRVQPLMKQE_ 0 0 0 ENST00000303758.7_1_X:68394206-68394332:+|nuORF ENST00000303758.7_1_X:68394206-68394332:+|nuORF ENST00000303758.7_1_X:68394206-68394332:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2070007324219 4 350.206599 1396.79729 1.2168 0.00042613 0.085796 3.0046E-05 1.3026 0.00045618 350.2066992692638 50.263 0.64935 50.214 49.846 50.495 -0.048824 48 31 2 0 0 0 0.74046 1 27322 27322 0.45452 0.29519 1 15695000 37214 11599 24758 25245 43824 43824 0.11476146182144475 LRRWFLWRRRR 11 Unmodified _LRRWFLWRRRR_ 0 0 0 ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF ENST00000368742.3_1_1:153234210-153234426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 851.0116577148438 2 851.013476 1700.0124 NaN NaN NaN NaN NaN NaN NaN 108.92 1 108.88 108.38 109.38 -0.047607 0 0 0 0.9435 1 60312 60312 0 0 1 37215 12283 24759 25246 43825 43825 0.19039293552577874 LRRWFTLWRWW 11 Unmodified _LRRWFTLWRWW_ 0 0 0 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4653930664062 2 853.464961 1704.91537 NaN NaN NaN NaN NaN NaN NaN 100.45 1 100.45 99.947 100.95 0 0 0 0 0.9435 1 55434 55434 0 0 1 + 37216 29749 24760 25247 43826 43826 0.09110886552957709 LRRWFTLWRWW 11 Unmodified _LRRWFTLWRWW_ 0 0 0 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 853.4680786132812 2 853.464961 1704.91537 NaN NaN NaN NaN NaN NaN NaN 100.53 1 100.4 99.9 100.9 -0.13293 0 0 0 0.9435 1 54875 54875 0 0 1 + 37217 29749 24760 25247 43827 43827 0.09110886552957709 LRRWFTLWRWW 11 Unmodified _LRRWFTLWRWW_ 0 0 0 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 MSMS AL20221201_MKP_PDAC_01 4 853.4677734375 2 853.464961 1704.91537 NaN NaN NaN NaN NaN NaN NaN 49.769 1 44.23 43.73 44.73 -5.5391 0 0 0 0.9435 1 31128 31128 0 0 1 + 37218 29749 24760 25247 43828 43828 0.09110886552957709 LRSDIHILI 9 Unmodified _LRSDIHILI_ 0 0 0 REV__ENSG00000187701|ENST00000460972|OR2T27 REV__ENSG00000187701|ENST00000460972|OR2T27 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3087768554688 2 540.332216 1078.64988 1.02 0.00055112 -0.67851 -0.00036662 0.34145 0.0001845 540.3319426781438 70.748 0.23598 70.784 70.658 70.894 0.035507 15 10 2 0 0 0 0.20554 1 38926 38926 9.3831 0 1 986260 + 37219 23651 24761 25248 43829 43829 0.11369997639667417 LRSDKTLF 8 Unmodified _LRSDKTLF_ 0 0 0 REV__nc|ENSG00000115355|Q3V6T2-2|CCDC88A REV__nc|ENSG00000115355|Q3V6T2-2|CCDC88A MSMS AL20221201_MKP_PDAC_01 4 490.2816162109375 2 490.282192 978.549831 NaN NaN NaN NaN NaN NaN NaN 106.61 1 100.44 99.935 100.94 -6.1757 0 0 0 0.97444 1 71354 71354 1.8442 0 1 + 37220 18974 24762 25249 43830 43830 0.05969760305845284 LRSDWWLGS 9 Unmodified _LRSDWWLGS_ 0 0 0 REV__ENST00000006275.8_1_19:45666221-45666380:-|nuORF REV__ENST00000006275.8_1_19:45666221-45666380:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8560485839844 3 373.857574 1118.55089 -0.57103 -0.00021348 -2.5047 -0.0009364 -3.0757 -0.0011499 373.8566020479534 26.689 0.27398 26.689 26.508 26.782 0 17 12 2 0 0 0 0.34999 1 13746 13746 10.151 3.5202 1 1210900 + 37221 24701 24763 25250 43831 43831 -0.0036402532525698916 LRSELFPTLY 10 Unmodified _LRSELFPTLY_ 0 0 0 REV__ENSG00000140519|ENST00000268122|RHCG REV__ENSG00000140519|ENST00000268122|RHCG MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5638122558594 3 413.564168 1237.67067 1.2548 0.00051894 0.22528 9.3169E-05 1.4801 0.00061211 413.563973868488 19.601 0.076626 16.944 16.91 16.987 -2.6564 7 4 2 0 0 0 0.6966 1 10413 10413 1.5923 0 1 2565300 + 37222 20479 24764 25251 43832 43832 0.06134543228677103 LRSFWLLRR 9 Unmodified _LRSFWLLRR_ 0 0 0 ENST00000300853.7_1_19:45912063-45912522:-|nuORF ENST00000300853.7_1_19:45912063-45912522:-|nuORF ENST00000300853.7_1_19:45912063-45912522:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.2573852539062 3 416.255891 1245.74584 NaN NaN NaN NaN NaN NaN NaN 108.26 1 102.08 101.58 102.58 -6.1757 0 0 0 0.85359 1 72363 72363 1.0715 0.29493 1 37223 11557 24765 25252 43833 43833 0.13280190270393177 LRSGDLLEVF 10 Unmodified _LRSGDLLEVF_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5491943359375 3 383.548518 1147.62372 0.99249 0.00038067 -2.2256 -0.00085362 -1.2331 -0.00047295 383.548182096755 39.639 0.39184 35.188 35.028 35.42 -4.4509 50 24 3 0 0 0 0.47059 1 23580 23580 17.863 0 1 12589000 + 37224 24352 24766 25253 43834 43834 0.055816836775193224 LRSPRQLI 8 Unmodified _LRSPRQLI_ 0 0 0 REV__ENST00000528844.1_1_10:127398100-127408035:-|nuORF REV__ENST00000528844.1_1_10:127398100-127408035:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8119812011719 2 491.811451 981.608348 0.65959 0.0003244 0.35395 0.00017408 1.0135 0.00049847 491.8114819142308 45.935 0.30091 45.907 45.763 46.064 -0.028011 29 13 3 0 0 0 0.77186 1 24770 24770 10.824 0 1 6384700 + 37225 28413 24767 25254 43835 43835 0.11680861670993181 LRSQKSLLF 9 Unmodified _LRSQKSLLF_ 0 0 0 REV__ENSG00000148841|ENST00000337478|ITPRIP REV__ENSG00000148841|ENST00000337478|ITPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.5575561523438 3 364.557236 1090.64988 0.58889 0.00021468 -0.51882 -0.00018914 0.070066 2.5543E-05 364.5570516042376 50.724 0.19564 50.67 50.589 50.784 -0.053871 21 9 3 0 0 0 0.31356 1 27455 27455 16.566 0 1 2027400 + 37226 20973 24768 25255 43836 43836 0.10817997639651367 LRSRLDVPR 9 Unmodified _LRSRLDVPR_ 0 0 0 REV__ENST00000526605.5_1_11:110226203-110276990:+|nuORF REV__ENST00000526605.5_1_11:110226203-110276990:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2280578613281 3 371.228001 1110.66217 NaN NaN NaN NaN NaN NaN NaN 36.409 1 36.43 35.93 36.93 0.021545 0 0 0 0.82579 1 19289 19289 4.5289 0.12271 1 + 37227 28373 24769 25256 43837 43837 0.11127034102696598 LRSVWGPLK 9 Unmodified _LRSVWGPLK_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8848266601562 3 352.550193 1054.62875 -0.27869 -9.8254E-05 1.2425 0.00043804 0.9638 0.00033979 352.88494913800724 32.77 0.094162 32.61 32.57 32.664 -0.15918 5 3 2 0 0 0 0.45045 1 17096 17096 6.6304 4.7861 1 783100 37228 5445 24770 25257 43838 43838 0.10362032330772308 LRSYNYPYWRR 11 Unmodified _LRSYNYPYWRR_ 0 0 0 REV__ENSG00000144048|ENST00000272444|DUSP11 REV__ENSG00000144048|ENST00000272444|DUSP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.6072998046875 3 525.27227 1572.79498 0.11461 6.0204E-05 2.5524 0.0013407 2.667 0.0014009 525.6078823472193 28.387 0.16164 28.417 28.332 28.494 0.029564 18 6 3 0 0 0 0.70705 1 14793 14793 3.5927 0.45872 1 3742200 + 37229 20690 24771 25258 43839 43839 0.03149433768680865 LRTHFLVAL 9 Unmodified _LRTHFLVAL_ 0 0 0 ENST00000603357.2_1_4:90034020-90034080:+|nuORF ENST00000603357.2_1_4:90034020-90034080:+|nuORF ENST00000603357.2_1_4:90034020-90034080:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.3272705078125 2 535.329476 1068.6444 NaN NaN NaN NaN NaN NaN NaN 31.861 1 28.165 27.665 28.665 -3.6958 0 0 0 0.26667 1 18083 18083 26.884 1.4843 1 37230 15830 24772 25259 43840 43840 0.11282318847838724 LRTLILGS 8 Unmodified _LRTLILGS_ 0 0 0 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 ENSG00000188558|ENST00000641804|OR2G6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7821350097656 2 436.781828 871.549102 NaN NaN NaN NaN NaN NaN NaN 53.24 1 53.177 52.677 53.677 -0.063423 0 0 0 0.48284 1 28870 28870 41.84 0 1 37231 9668 24773 25260 43841 43841 0.10818965656801538 LRTLQELIWE 10 Unmodified _LRTLQELIWE_ 0 0 0 REV__nc|ENSG00000182541|P53671-3|LIMK2 REV__nc|ENSG00000182541|P53671-3|LIMK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.8668823242188 2 650.86662 1299.71869 -0.029881 -1.9448E-05 0.50705 0.00033002 0.47717 0.00031058 650.8668427385284 80.605 0.24863 80.605 80.452 80.7 0 21 10 3 0 0 0 0.68539 1 44724 44724 4.5289 0 1 1041500 + 37232 29836 24774 25261 43842 43842 0.08081617148695841 LRTLQELIWE 10 Unmodified _LRTLQELIWE_ 0 0 0 REV__nc|ENSG00000182541|P53671-3|LIMK2 REV__nc|ENSG00000182541|P53671-3|LIMK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8677978515625 2 650.86662 1299.71869 4.2885 0.0027912 -0.5399 -0.0003514 3.7486 0.0024398 650.8663285059731 98.68 0.34673 98.652 98.458 98.804 -0.028282 52 12 6 0 0 0 0.42143 1 54821 54821 20.415 3.8487 1 366880000 + 37233 29836 24774 25261 43843 43843 0.08081617148695841 LRTSFTFRKVR 11 Unmodified _LRTSFTFRKVR_ 0 0 0 nc|ENSG00000137760|Q96BT7-4|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8;ENST00000260318.6_1_11:107375936-107422548:-|nuORF nc|ENSG00000137760|Q96BT7-4|ALKBH8 nc|ENSG00000137760|Q96BT7-4|ALKBH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 705.9177856445312 2 705.920052 1409.82555 NaN NaN NaN NaN NaN NaN NaN 90.122 1 89.62 89.12 90.12 -0.50171 0 0 0 0.94313 1 49265 49265 0.26902 0.26902 1 37234 4964 24775 25262 43844 43844 0.13703212153723143 LRVALKAAAA 10 Unmodified _LRVALKAAAA_ 0 0 0 ENST00000502918.1_3_4:4292009-4301667:+|nuORF ENST00000502918.1_3_4:4292009-4301667:+|nuORF ENST00000502918.1_3_4:4292009-4301667:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.3210754394531 2 492.321651 982.62875 0.50482 0.00024853 -0.44761 -0.00022037 0.057212 2.8167E-05 492.32113615429057 103.19 0.24001 103.09 102.96 103.2 -0.10458 22 11 2 0 0 0 0.72607 1 56269 56269 0 0 1 283540 37235 14463 24776 25263 43845 43845 0.13674032330766295 LRVARLLQRL 10 Unmodified _LRVARLLQRL_ 0 0 0 ENST00000246117.8_1_19:3209233-3209482:+|nuORF ENST00000246117.8_1_19:3209233-3209482:+|nuORF ENST00000246117.8_1_19:3209233-3209482:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.415771484375 2 619.414406 1236.81426 1.37 0.0008486 -1.9253 -0.0011925 -0.55529 -0.00034395 619.4134843435664 103.43 0.094116 97.25 97.188 97.282 -6.1757 16 11 2 0 0 0 0.72247 1 69341 69341 0.40072 0 1 8085700 37236 11122 24777 25264 43846 43846 0.20532434850269965 LRVGRPVL 8 Unmodified _LRVGRPVL_ 0 0 0 ENST00000418210.2_1_8:91657672-91657804:-|nuORF ENST00000418210.2_1_8:91657672-91657804:-|nuORF ENST00000418210.2_1_8:91657672-91657804:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.303955078125 2 455.303262 908.59197 1.388 0.00063195 -1.0014 -0.00045592 0.38663 0.00017603 455.302820443592 95.901 0.14118 89.726 89.66 89.801 -6.1757 12 7 2 0 0 0 0.74163 1 63548 63548 13.508 0 1 8499900 37237 13065 24778 25265 43847 43847 0.1340178050488703 LRVHAKLW 8 Unmodified _LRVHAKLW_ 0 0 0 REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF REV__ENST00000255559.7_1_17:70642350-70642518:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.814453125 2 511.816536 1021.61852 NaN NaN NaN NaN NaN NaN NaN 19.286 1 19.294 18.794 19.794 0.0078487 0 0 0 0.97444 1 9805 9805 2.3027 0.82083 1 + 37238 24916 24779 25266 43848 43848 0.10857469396216857 LRVHQQHK 8 Unmodified _LRVHQQHK_ 0 0 0 nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3040161132812 2 523.304324 1044.5941 0.85754 0.00044876 -0.87767 -0.00045929 -0.020123 -1.053E-05 523.3036635696861 91.21 0.46507 91.246 91.012 91.477 0.036499 40 17 3 0 0 0 0.80676 1 50692 50692 2.5775 0.27475 1 15331000 37239 5896 24780 25267 43849 43849 0.07358209242693192 LRVLESLVLPG 11 Unmodified _LRVLESLVLPG_ 0 0 0 REV__ENST00000568371.1_1_16:74401492-74401992:-|nuORF REV__ENST00000568371.1_1_16:74401492-74401992:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2513122558594 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 49.111 1 49.067 48.567 49.567 -0.04369 0 0 0 0.94287 1 26526 26526 0.45452 0 1 + 37240 28943 24781 25268 43850 43850 0.14403109016689086 LRVLFPRV 8 Unmodified _LRVLFPRV_ 0 0 0 ENST00000588572.6_3_19:55865056-55865797:-|nuORF ENST00000588572.6_3_19:55865056-55865797:-|nuORF ENST00000588572.6_3_19:55865056-55865797:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.3261108398438 2 500.326737 998.63892 NaN NaN NaN NaN NaN NaN NaN 104.81 1 98.637 98.137 99.137 -6.1757 0 0 0 0.97444 1 70164 70164 0.69038 0 1 37241 15649 24782 25269 43851 43851 0.13954640056022072 LRVLIHILTEI 11 Unmodified _LRVLIHILTEI_ 0 0 0 REV__ENST00000447898.1_22:16151473-16151611:-|nuORF REV__ENST00000447898.1_22:16151473-16151611:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.4268798828125 2 660.424105 1318.83366 NaN NaN NaN NaN NaN NaN NaN 103.88 1 103.83 103.33 104.33 -0.048737 0 0 0 0.94307 1 57681 57681 0.30703 0 1 + 37242 27167 24783 25270 43852 43852 0.18699346350513224 LRVLIHLIM 9 Unmodified _LRVLIHLIM_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.9067077636719 3 369.907212 1106.69981 -0.29335 -0.00010851 -1.0817 -0.00040013 -1.375 -0.00050864 369.9068595717724 36.705 0.75292 36.727 36.295 37.048 0.021545 87 34 3 0 0 0 0.60485 1 19576 19576 1.0715 0.83562 1 31223000 37243 3680 24784 25271 43853 43853 0.15072409043932566 LRVLLRLAPA 10 Unmodified _LRVLLRLAPA_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.880859375 2 561.3795 1120.74445 -0.1527 -8.572E-05 0.30189 0.00016948 0.1492 8.3756E-05 561.3787977248348 105.08 0.029976 105.03 105.02 105.05 -0.048737 9 5 3 0 0 0 0.24007 1 58325 58325 0.45834 0 1 6602900 37244 10540 24785 25272 43854 43854 0.18890556181668217 LRVNAKQLQNI 11 Unmodified _LRVNAKQLQNI_ 0 0 0 REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF REV__ENST00000484717.5_1_3:38035793-38043423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.9292297363281 3 432.929733 1295.76737 -0.39411 -0.00017062 -0.50759 -0.00021975 -0.9017 -0.00039037 432.92940595715316 30.745 0.26508 30.745 30.566 30.831 0 28 12 3 0 0 0 0.65108 1 15998 15998 7.0371 0.80273 1 4847100 + 37245 20133 24786 25273 43855 43855 0.13131530508462674 LRVRLLDVYE 10 Unmodified _LRVRLLDVYE_ 0 0 0 ENST00000599418.1_1_19:39433250-39435758:-|nuORF;ENST00000597696.5_1_19:39433250-39437239:-|nuORF;ENSG00000269190|ENST00000292852|FBXO17 ENST00000599418.1_1_19:39433250-39435758:-|nuORF ENST00000599418.1_1_19:39433250-39435758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.3741455078125 2 638.374612 1274.73467 NaN NaN NaN NaN NaN NaN NaN 101.9 1 101.86 101.36 102.36 -0.045853 0 0 0 1.0024 1 56608 56608 0.40072 0 1 37246 10877 24787 25274 43856 43856 0.10829323385587486 LRWAAGGK 8 Unmodified _LRWAAGGK_ 0 0 0 ENST00000475699.5_1_X:153649641-153649923:+|nuORF ENST00000475699.5_1_X:153649641-153649923:+|nuORF ENST00000475699.5_1_X:153649641-153649923:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7511291503906 2 429.750862 857.487171 0.16044 6.8948E-05 0.31818 0.00013674 0.47862 0.00020569 429.7508642014264 29.185 0.19505 29.215 29.079 29.274 0.030106 12 7 2 0 0 0 0.78849 1 15238 15238 9.3474 2.6243 1 1765200 37247 13968 24788 25275 43857 43857 0.05272659028332782 LRWARWLWRRL 11 Unmodified _LRWARWLWRRL_ 0 0 0 ENST00000491791.1_1_3:49377935-49378118:-|nuORF ENST00000491791.1_1_3:49377935-49378118:-|nuORF ENST00000491791.1_1_3:49377935-49378118:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.4772338867188 2 806.478403 1610.94225 NaN NaN NaN NaN NaN NaN NaN 60.773 1 60.284 59.784 60.784 -0.48932 0 0 0 0.9435 1 33097 33097 0 0 1 37248 14286 24789 25276 43858 43858 0.1612199516414421 LRWHDHYYRRH 11 Unmodified _LRWHDHYYRRH_ 0 0 0 REV__ENSG00000188070|ENST00000433688|ZFTA REV__ENSG00000188070|ENST00000433688|ZFTA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 819.91259765625 2 819.911082 1637.80761 NaN NaN NaN NaN NaN NaN NaN 87.461 1 87.514 87.014 88.014 0.053352 0 0 0 0.9435 1 48634 48634 0 0 1 + 37249 23687 24790 25277 43859 43859 0.01421889951598132 LRWHHRSL 8 Unmodified _LRWHHRSL_ 0 0 0 REV__ENST00000261427.9_1_4:39780127-39780229:+|nuORF REV__ENST00000261427.9_1_4:39780127-39780229:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.810546875 2 552.812316 1103.61008 -0.14889 -8.2311E-05 0.6735 0.00037232 0.5246 0.00029001 552.8127433478317 36.43 0.14545 36.452 36.349 36.494 0.021545 11 6 2 0 0 0 0.64853 1 19305 19305 21.747 6.9084 1 1728000 + 37250 24984 24791 25278 43860 43860 0.06241915479608906 LRWIRALLRRM 11 Unmodified _LRWIRALLRRM_ 0 0 0 REV__OR2B11|p.L305M|1|0.25|ENSG00000177535|chr1:247451070-247451070|G/T|missense_variant REV__OR2B11|p.L305M|1|0.25|ENSG00000177535|chr1:247451070-247451070|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.771240234375 2 742.461365 1482.90818 0.15108 0.00011217 -0.015629 -1.1604E-05 0.13545 0.00010057 742.462097030141 97.79 0.41344 97.547 97.313 97.727 -0.24277 40 20 3 0 0 0 0.7453 1 53424 53424 0 0 1 6729900 + 37251 30066 24792 25279 43861 43861 0.18603830680854117 LRWKKPDI 8 Unmodified _LRWKKPDI_ 0 0 0 ENST00000528806.5_1_14:23598711-23607206:-|nuORF;ENST00000397310.6_1_14:23596388-23599053:-|nuORF;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8 ENST00000528806.5_1_14:23598711-23607206:-|nuORF ENST00000528806.5_1_14:23598711-23607206:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5489196777344 3 352.550193 1054.62875 NaN NaN NaN NaN NaN NaN NaN 32.623 1 32.653 32.153 33.153 0.029743 0 0 0 0.94061 1 17134 17134 13.906 5.1606 1 37252 1603 24793 25280 43862 43862 0.10362032330772308 LRWNKSRAY 9 Unmodified _LRWNKSRAY_ 0 0 0 REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000185404|Q9H930-1|SP140L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.7820434570312 2 597.330539 1192.64652 0.24108 0.00014401 0.12276 7.3327E-05 0.36384 0.00021733 597.330130188441 43.06 0.2656 38.296 38.111 38.377 -4.7648 38 16 3 0 0 0 0.20139 1 26072 26072 10.824 3.5347 1 20244000 + 37253 23499 24794 25281 43863 43863 0.05790747585660938 LRWQQRLWT 9 Unmodified _LRWQQRLWT_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2;ENST00000467936.5_1_3:45542057-45579920:+|nuORF ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8593139648438 2 643.859464 1285.70437 0.54547 0.0003512 -0.55309 -0.00035611 -0.0076213 -4.907E-06 643.8594978149882 81.675 0.31918 81.179 80.994 81.313 -0.4952 27 12 3 0 0 0 0.43463 1 44703 44703 10.824 1.28 1 856040 37254 444 24795 25282 43864 43864 0.07295009511062744 LRWRFWWEYVN 11 Unmodified _LRWRFWWEYVN_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.9183959960938 2 827.91751 1653.82047 NaN NaN NaN NaN NaN NaN NaN 90.808 1 90.314 89.814 90.814 -0.49457 0 0 0 0.9435 1 49637 49637 0 0 1 + 37255 19597 24796 25283 43865 43865 0.019709082911504083 LRWRHWRRRLE 11 Unmodified _LRWRHWRRRLE_ 0 0 0 REV__ENSG00000215644|ENST00000400723|GCGR REV__ENSG00000215644|ENST00000400723|GCGR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.4779052734375 2 832.479466 1662.94438 NaN NaN NaN NaN NaN NaN NaN 52.1 1 52.041 51.541 52.541 -0.058918 0 0 0 0.9435 1 28216 28216 0 0 1 + 37256 24345 24797 25284 43866 43866 0.13942423901926304 LRWWSSRPY 9 Unmodified _LRWWSSRPY_ 0 0 0 REV__ENST00000273610.3_1_3:48600556-48601194:-|nuORF REV__ENST00000273610.3_1_3:48600556-48601194:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.3251953125 2 625.825089 1249.63563 0.1589 9.9442E-05 -1.2243 -0.00076621 -1.0654 -0.00066677 625.8243174382188 65.021 0.20766 65.021 64.936 65.143 0 21 9 3 0 0 0 0.5029 1 36267 36267 7.2892 1.0834 1 1599500 + 37257 25160 24798 25285 43867 43867 0.02079345211382133 LRYANRAKNI 10 Unmodified _LRYANRAKNI_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000101350|O15066-2|KIF3B;nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B;nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000131437|Q9Y496|KIF3A ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8841247558594 3 406.907039 1217.69929 0.3285 0.00013367 -1.4718 -0.00059888 -1.1433 -0.00046521 406.90662943324753 52.784 0.27893 52.721 52.603 52.882 -0.063419 29 13 3 0 0 0 0.69126 1 28588 28588 3.8763 0 1 5357000 37258 1953;16070;4325 24799 25286 43868 43868 0.0991470564847532 LRYCHGNGSFI 11 Unmodified _LRYCHGNGSFI_ 0 0 0 REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.8728332519531 3 422.873118 1265.59753 NaN NaN NaN NaN NaN NaN NaN 20.845 1 18.152 17.652 18.652 -2.693 0 0 0 0.93224 1 11124 11124 2.6312 0 1 + 37259 28463 24800 25287 43869 43869 -0.024649087655916446 LRYEIESIL 9 Unmodified _LRYEIESIL_ 0 0 0 REV__ENST00000507699.1_1_4:169819634-169847533:+|nuORF REV__ENST00000507699.1_1_4:169819634-169847533:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3209838867188 2 568.321514 1134.62847 0.24084 0.00013687 1.3386 0.00076077 1.5795 0.00089764 568.321818273287 84.872 0.49194 78.696 78.483 78.975 -6.1757 70 28 3 0 0 0 0.19361 1 55841 55841 25.399 7.0262 1 49313000 + 37260 19650 24801 25288 43870 43870 0.06654567820282864 LRYGFLLML 9 Unmodified _LRYGFLLML_ 0 0 0 ENSG00000197408|ENST00000324071|CYP2B6 ENSG00000197408|ENST00000324071|CYP2B6 ENSG00000197408|ENST00000324071|CYP2B6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.88720703125 3 375.887817 1124.64162 -0.5831 -0.00021918 0.19757 7.4264E-05 -0.38553 -0.00014491 375.8879217076129 17.326 0.12988 17.326 17.256 17.386 0 54 29 2 0 0 0 0.54444 1 8508 8508 2.7352 0.23671 1 1409800 37261 9950 24802 25289 43871 43871 0.08428727398677438 LRYPERLK 8 Unmodified _LRYPERLK_ 0 0 0 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.824951171875 2 537.824558 1073.63456 1.2826 0.00068984 -1.376 -0.00074002 -0.093313 -5.0186E-05 537.8238310933926 50.065 0.36372 50.016 49.763 50.127 -0.048824 31 17 2 0 0 0 0.72664 1 27035 27035 14.838 0.93222 1 2079100 37262 6534 24803 25290 43872 43872 0.10069130842452978 LRYTMVIKVSL 11 Unmodified _LRYTMVIKVSL_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MSMS AL20221201_MKP_PDAC_01 4 661.8964233398438 2 661.896866 1321.77918 NaN NaN NaN NaN NaN NaN NaN 100.12 1 93.942 93.442 94.442 -6.1757 0 0 0 0.5508 1 66880 66880 22.658 0 1 + 37263 22822;29793 24804 25291 43873 43873 0.13116011207466727 LRYYNKCQYRF 11 Unmodified _LRYYNKCQYRF_ 0 0 0 REV__nc|ENSG00000261701|P00739-2|HPR REV__nc|ENSG00000261701|P00739-2|HPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 777.38720703125 2 777.387728 1552.7609 0.30228 0.00023499 -1.1796 -0.000917 -0.87732 -0.00068202 777.387008777975 84.823 0.7151 78.647 78.242 78.957 -6.1757 159 41 5 0 0 0 0.68427 1 55627 55627 5.7319 0.43497 1 257890000 + 37264 29993 24805 25292 43874 43874 0.006632692854054767 LRYYRRKV 8 Unmodified _LRYYRRKV_ 0 0 0 ENSG00000108950|ENST00000592554|FAM20A ENSG00000108950|ENST00000592554|FAM20A ENSG00000108950|ENST00000592554|FAM20A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3515014648438 2 577.351274 1152.688 NaN NaN NaN NaN NaN NaN NaN 101.65 1 101.6 101.1 102.1 -0.045853 0 0 0 0.97444 1 56472 56472 0 0 1 37265 2620 24806 25293 43875 43875 0.11775928344968634 LSACGSRCC 9 Unmodified _LSACGSRCC_ 0 0 0 REV__ENST00000519685.5_1_8:22863615-22864656:+|nuORF REV__ENST00000519685.5_1_8:22863615-22864656:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.1793823242188 2 450.18024 898.345927 NaN NaN NaN NaN NaN NaN NaN 32.605 1 32.605 32.105 33.105 0 0 0 0 0.7453 1 17049 17049 7.9102 2.6795 1 + 37266 28264 24807 25294 43876 43876 -0.10731166723132901 LSAELLEHY 9 Unmodified _LSAELLEHY_ 0 0 0 REV__ENSG00000099991|ENST00000263119|CABIN1 REV__ENSG00000099991|ENST00000263119|CABIN1 MSMS AL20221201_MKP_PDAC_01 4 537.7770385742188 2 537.776939 1073.53933 NaN NaN NaN NaN NaN NaN NaN 69.304 1 63.128 62.628 63.628 -6.1757 0 0 0 0.17247 1 45263 45263 34.102 1.797 1 + 37267 17997 24808 25295 43877 43877 0.005497328607589225 LSAELVML 8 Unmodified _LSAELVML_ 0 0 0 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2487487792969 2 438.248972 874.48339 0.72327 0.00031697 0.24945 0.00010932 0.97272 0.00042629 438.2491544910802 82.65 0.3218 76.474 76.339 76.661 -6.1757 25 18 2 0 0 0 0.35156 1 54270 54270 49.669 2.748 1 6798300 37268 16315 24809 25296 43878 43878 0.041128084195975134 LSAFPPGD 8 Unmodified _LSAFPPGD_ 0 0 0 REV__ENST00000473758.5_1_14:23537472-23537793:-|nuORF REV__ENST00000473758.5_1_14:23537472-23537793:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1996459960938 2 402.200336 802.386119 0.72542 0.00029177 -0.91619 -0.00036849 -0.19077 -7.6726E-05 402.1999525062803 73.871 0.27354 73.395 73.275 73.549 -0.47588 19 13 2 0 0 0 0.63229 1 40429 40429 23.148 2.2772 1 822080 + 37269 27550 24810 25297 43879 43879 -0.022978374650392652 LSAGPFAA 8 Unmodified _LSAGPFAA_ 0 0 0 REV__nc|ENSG00000183283|Q15038-2|DAZAP2 REV__nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.19775390625 2 367.197596 732.38064 0.5968 0.00021914 -0.38612 -0.00014178 0.21068 7.7363E-05 367.1972755620803 54.132 0.29919 54.132 53.923 54.222 0 16 13 2 0 0 0 0.5953 1 30041 30041 26.341 5.4701 1 1420700 + 37270 23333 24811 25298 43880 43880 0.0037448374313271415 LSAHFGRA 8 Unmodified _LSAHFGRA_ 0 0 0 REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7332153320312 2 429.732669 857.450785 0.79439 0.00034137 1.2959 0.00055689 2.0903 0.00089826 429.73316583143355 58.284 0.35625 58.223 58.038 58.394 -0.060719 42 17 3 0 0 0 0.80722 1 31695 31695 2.3027 0 1 15209000 + 37271 26982 24812 25299 43881 43881 0.016357821316205445 LSAHFGRA 8 Unmodified _LSAHFGRA_ 0 0 0 REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.732669 857.450785 0.25345 0.00010892 1.6926 0.00072737 1.9461 0.00083629 429.73342748939916 58.286 0.33851 58.286 58.103 58.441 0 0.031525 0.00018513 NaN 2.3027 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1862600 + 37272 26982 24812 25299 0.016357821316205445 LSAHFGRA 8 Unmodified _LSAHFGRA_ 0 0 0 REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 429.732669 857.450785 0.79439 0.00034137 1.2959 0.00055689 2.0903 0.00089826 429.73316583143355 58.284 0.35625 58.223 58.038 58.394 -0.060719 -0.031525 -0.00015584 NaN 2.3027 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 15209000 + 37273 26982 24812 25299 0.016357821316205445 LSAHPAPP 8 Unmodified _LSAHPAPP_ 0 0 0 ENST00000469641.5_1_19:19756233-19756668:-|nuORF ENST00000469641.5_1_19:19756233-19756668:-|nuORF ENST00000469641.5_1_19:19756233-19756668:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2162170410156 2 395.216321 788.418088 0.47973 0.0001896 0.091736 3.6256E-05 0.57147 0.00022585 395.2163417043476 48.255 0.3311 47.895 47.824 48.155 -0.3596 20 16 2 0 0 0 0.50586 1 25885 25885 34.187 0 1 2194300 37274 13840 24813 25300 43882 43882 0.015415750087527158 LSAHPAPP 8 Unmodified _LSAHPAPP_ 0 0 0 ENST00000469641.5_1_19:19756233-19756668:-|nuORF ENST00000469641.5_1_19:19756233-19756668:-|nuORF ENST00000469641.5_1_19:19756233-19756668:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.2167358398438 2 395.216321 788.418088 NaN NaN NaN NaN NaN NaN NaN 53.517 1 47.713 47.213 48.213 -5.8042 0 0 0 0.73801 1 33834 33834 26.341 0 1 37275 13840 24813 25300 43883 43883 0.015415750087527158 LSAIDGLYI 9 Unmodified _LSAIDGLYI_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.534423828125 1 964.534975 963.527698 1.0994 0.0010604 -4.3449 -0.0041908 -3.2455 -0.0031304 964.530645313094 94.511 0.18767 88.335 88.204 88.392 -6.1757 17 10 2 0 0 0 0.047196 1 62537 62537 46.021 6.0636 1 8567100 + 37276 22194 24814 25301 43884 43884 0.04447535837425676 LSAITSHSR 9 Unmodified _LSAITSHSR_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2700805664062 2 486.267073 970.519593 1.1029 0.00053629 2.516 0.0012234 3.6188 0.0017597 486.2688540359042 53.553 0.38179 47.749 47.562 47.944 -5.8042 34 24 3 0 0 0 0.08691 1 33790 33790 36.127 1.7253 1 23960000 + 37277 20661 24815 25302 43885 43885 0.033154016406683695 LSAITSHSR 9 Unmodified _LSAITSHSR_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.267073 970.519593 0.58588 0.00028489 4.2771 0.0020798 4.863 0.0023647 486.26923816890513 48.275 0.33079 47.903 47.771 48.102 -0.37172 0.076995 0.00078448 NaN 36.127 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2419500 + 37278 20661 24815 25302 0.033154016406683695 LSAKFRKF 8 Unmodified _LSAKFRKF_ 0 0 0 REV__ENSG00000130940|ENST00000377022|CASZ1 REV__ENSG00000130940|ENST00000377022|CASZ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2284851074219 2 498.803094 995.591636 0.36538 0.00018225 1.1535 0.00057539 1.5189 0.00075764 498.8033683920028 50.291 0.33596 50.291 50.075 50.411 0 26 15 2 0 0 0 8.7369 1 27691 27691 0.79363 0.79363 1 1159300 + 37279 19754 24816 25303 43886 43886 0.09366360785043071 LSALLPGNF 9 Unmodified _LSALLPGNF_ 0 0 0 ENSG00000104998|ENST00000263379|IL27RA ENSG00000104998|ENST00000263379|IL27RA ENSG00000104998|ENST00000263379|IL27RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2681884765625 2 466.26601 930.517468 1.2808 0.00059718 1.6046 0.00074816 2.8854 0.0013453 466.26686654007864 96.718 0.21851 90.542 90.437 90.656 -6.1757 18 12 2 0 0 0 0.16226 1 64117 64117 26.884 0 1 9119300 37280 2270 24817 25304 43887 43887 0.049429729028588554 LSANFAQPTL 10 Unmodified _LSANFAQPTL_ 0 0 0 ENST00000490758.6_1_1:109716345-109734117:+|nuORF ENST00000490758.6_1_1:109716345-109734117:+|nuORF ENST00000490758.6_1_1:109716345-109734117:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2843017578125 2 531.284931 1060.55531 NaN NaN NaN NaN NaN NaN NaN 61.165 1 60.676 60.176 61.176 -0.48932 0 0 0 0.80141 1 33313 33313 12.241 0.60036 1 37281 14266 24818 25305 43888 43888 0.027454390976799914 LSANVPQPF 9 Unmodified _LSANVPQPF_ 0 0 0 nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 nc|ENSG00000066032|P26232-2|CTNNA2 nc|ENSG00000066032|P26232-2|CTNNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2716674804688 2 486.761092 971.507631 0.60246 0.00029326 1.3552 0.00065967 1.9577 0.00095293 486.7611280808339 60.571 0.65217 60.571 60.301 60.953 0 78 28 4 0 0 0 0.2143 1 33896 33896 21.747 2.3076 1 43120000 37282 924 24819 25306 43889 43889 0.020737848974818007 LSAPHLASPP 10 Unmodified _LSAPHLASPP_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2742309570312 2 495.274367 988.53418 0.57553 0.00028505 -0.42106 -0.00020854 0.15447 7.6506E-05 495.27409360145623 48.282 0.45043 47.911 47.711 48.162 -0.37172 53 22 3 0 0 0 0.043729 2 25947 25842;25947 61.357 7.7313 1 9351900 37283 3961 24820 25307 43890;43891 43891 0.03945473788803611 LSAPHLASPP 10 Unmodified _LSAPHLASPP_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2765197753906 2 495.274367 988.53418 1.0981 0.00054387 -0.22035 -0.00010914 0.87777 0.00043474 495.2741363046418 53.536 0.57076 47.732 47.481 48.052 -5.8042 65 36 2 0 0 0 0.043729 2 33754 33754;34019 61.357 8.4101 1 69307000 37284 3961 24820 25307 43892;43893 43892 0.03945473788803611 LSAPHLASPP 10 Unmodified _LSAPHLASPP_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 495.274367 988.53418 0.57553 0.00028505 -0.42106 -0.00020854 0.15447 7.6506E-05 495.27409360145623 48.282 0.45043 47.911 47.711 48.162 -0.37172 0.089553 -8.0895E-05 NaN 61.357 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 9351900 37285 3961 24820 25307 0.03945473788803611 LSAPHLASPP 10 Unmodified _LSAPHLASPP_ 0 0 0 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 ENSG00000126705|ENST00000673934|AHDC1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 495.274367 988.53418 1.0981 0.00054387 -0.22035 -0.00010914 0.87777 0.00043474 495.2741363046418 53.536 0.57076 47.732 47.481 48.052 -5.8042 -0.089553 0.00011791 NaN 61.357 65 36 2 NaN NaN NaN NaN 0 NaN NaN 0 69307000 37286 3961 24820 25307 0.03945473788803611 LSAPWPPPTCP 11 Unmodified _LSAPWPPPTCP_ 0 0 0 ENST00000366699.3_1_1:228594180-228594273:-|nuORF ENST00000366699.3_1_1:228594180-228594273:-|nuORF ENST00000366699.3_1_1:228594180-228594273:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2902221679688 2 583.289159 1164.56377 2.3619 0.0013776 -4.0987 -0.0023907 -1.7369 -0.0010131 583.2868361322476 94.07 0.25261 94.084 93.883 94.135 0.014244 15 9 2 0 0 0 0.68427 1 52291 52291 5.7319 0.97584 1 1025400 37287 12208 24821 25308 43894 43894 -0.011933302573652327 LSARWPEL 8 Unmodified _LSARWPEL_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7702941894531 2 486.269084 970.523616 1.1029 0.00053629 -1.6204 -0.00078794 -0.5175 -0.00025165 486.2688540359042 53.553 0.38179 47.749 47.562 47.944 -5.8042 34 24 3 0 0 0 8.7369 1 33938 33938 30.637 0 1 23960000 + 37288 20072 24822 25309 43895 43895 0.0371749113437545 LSASLSSH 8 Unmodified _LSASLSSH_ 0 0 0 ENSG00000189320|ENST00000338588|FAM180A ENSG00000189320|ENST00000338588|FAM180A ENSG00000189320|ENST00000338588|FAM180A MULTI-MSMS AL20221201_MKP_PDAC_01 4 802.413818359375 1 801.410108 800.402832 0.86549 0.00069361 0.4937 0.00039566 1.3592 0.0010893 801.4103347028212 45.501 0.33751 40.546 40.392 40.729 -4.9549 34 22 2 0 0 0 0.37649 1 28015 28015 46.921 4.8263 1 12366000 37289 9741 24823 25310 43896 43896 -0.005353365790938369 LSASQSTLLCS 11 Unmodified _LSASQSTLLCS_ 0 0 0 ENSG00000092607|ENST00000369429|TBX15;nc|ENSG00000092607|Q96SF7-2|TBX15 ENSG00000092607|ENST00000369429|TBX15 ENSG00000092607|ENST00000369429|TBX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2799682617188 2 555.278989 1108.54342 0.84434 0.00046884 -1.0731 -0.00059588 -0.22878 -0.00012704 555.2782989743642 79.297 0.74961 78.811 78.349 79.099 -0.48596 72 32 3 0 0 0 0.62338 1 43461 43461 10.151 0.80313 1 1290100 37290 1620 24824 25311 43897 43897 -0.006505457078219479 LSASQSTLLCS 11 Unmodified _LSASQSTLLCS_ 0 0 0 ENSG00000092607|ENST00000369429|TBX15;nc|ENSG00000092607|Q96SF7-2|TBX15 ENSG00000092607|ENST00000369429|TBX15 ENSG00000092607|ENST00000369429|TBX15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2805786132812 2 555.278989 1108.54342 0.7889 0.00043806 0.77058 0.00042789 1.5595 0.00086595 555.2794868591268 82.812 0.90948 76.636 76.215 77.125 -6.1757 119 51 3 0 0 0 0.46131 1 54733 54733 18.373 0.22675 1 13024000 37291 1620 24824 25311 43898 43898 -0.006505457078219479 LSASTTETLLS 11 Unmodified _LSASTTETLLS_ 0 0 0 ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7982788085938 2 561.798069 1121.58158 -0.064843 -3.6428E-05 1.3119 0.00073703 1.2471 0.0007006 561.7986939381889 23.745 0.19339 23.745 23.659 23.852 0 16 9 2 0 0 0 0.71618 1 12112 12112 2.7352 0 1 926880 37292 2828 24825 25312 43899 43899 0.025656634784809285 LSATINNPNL 10 Unmodified _LSATINNPNL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7874145507812 2 528.787838 1055.56112 3.37 0.001782 -0.19775 -0.00010457 3.1723 0.0016775 528.7872084802244 97.903 0.57635 97.885 97.678 98.255 -0.018188 45 20 4 0 0 0 0.24625 1 54360 54360 30.637 7.4881 1 10140000 37293 8967 24826 25313 43900 43900 0.035565376093245504 LSATNAAPG 9 Unmodified _LSATNAAPG_ 0 0 0 REV__nc|ENSG00000068615|Q9H902-4|REEP1 REV__nc|ENSG00000068615|Q9H902-4|REEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.4119873046875 1 801.410108 800.402832 0.86549 0.00069361 0.4937 0.00039566 1.3592 0.0010893 801.4103347028212 45.501 0.33751 40.546 40.392 40.729 -4.9549 34 22 2 0 0 0 0.0095811 1 28026 28026 81.613 10.479 1 12366000 + 37294 29502 24827 25314 43901 43901 -0.005353365790938369 LSATNAAPG 9 Unmodified _LSATNAAPG_ 0 0 0 REV__nc|ENSG00000068615|Q9H902-4|REEP1 REV__nc|ENSG00000068615|Q9H902-4|REEP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 401.2292785644531 2 401.208692 800.402832 0.67348 0.00027021 0.48272 0.00019367 1.1562 0.00046388 401.2088937167553 45.527 0.36342 40.572 40.41 40.774 -4.9549 32 24 2 0 0 0 0.081537 1 27935 27935 34.102 7.2188 1 14410000 + 37295 29502 24827 25314 43902 43902 -0.005353365790938369 LSAWVGQR 8 Unmodified _LSAWVGQR_ 0 0 0 REV__ENSG00000197136|ENST00000355703|PCNX3 REV__ENSG00000197136|ENST00000355703|PCNX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.75439453125 2 458.753601 915.49265 NaN NaN NaN NaN NaN NaN NaN 61.898 1 61.865 61.365 62.365 -0.032787 0 0 0 0.97444 1 33794 33794 2.3027 0 1 + 37296 23899 24828 25315 43903 43903 0.03152337820142748 LSCCCCCSYC 10 Unmodified _LSCCCCCSYC_ 0 0 0 ENST00000326294.3_1_11:67203673-67203718:-|nuORF ENST00000326294.3_1_11:67203673-67203718:-|nuORF ENST00000326294.3_1_11:67203673-67203718:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.1456298828125 2 544.145837 1086.27712 NaN NaN NaN NaN NaN NaN NaN 15.814 1 15.819 15.319 16.319 0.0050564 0 0 0 1.0061 1 7899 7899 0 0 1 37297 11818 24829 25316 43904 43904 -0.2625665840103011 LSCCILKFGWI 11 Unmodified _LSCCILKFGWI_ 0 0 0 REV__ENST00000567887.5_2_1:39952132-39952264:+|nuORF REV__ENST00000567887.5_2_1:39952132-39952264:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.83837890625 2 641.837962 1281.66137 -0.023477 -1.5068E-05 -0.13932 -8.942E-05 -0.16279 -0.00010449 641.8378281484222 81.246 0.37039 81.246 81.046 81.416 0 54 17 4 0 0 0 0.70435 1 45040 45040 4.5289 0 1 3690700 + 37298 28936 24830 25317 43905 43905 0.03180735347132213 LSCDIDYSTLF 11 Unmodified _LSCDIDYSTLF_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.792236328125 2 638.791929 1275.5693 0.033416 2.1346E-05 0.92992 0.00059403 0.96334 0.00061537 639.2943183944811 87.814 0.37504 87.814 87.616 87.991 0 31 17 3 0 0 0 0.72952 1 48583 48583 1.4819 0.15237 1 416860 + 37299 17185 24831 25318 43906 43906 -0.057456962562127956 LSCKIVVTI 9 Unmodified _LSCKIVVTI_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2972106933594 2 488.298996 974.583439 NaN NaN NaN NaN NaN NaN NaN 64.889 1 64.405 63.905 64.905 -0.48463 0 0 0 0.67877 1 35407 35407 10.074 0 1 + 37300 20613 24832 25319 43907 43907 0.09513045753396909 LSCKVSIRTDN 11 Unmodified _LSCKVSIRTDN_ 0 0 0 nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1 nc|ENSG00000113456|O60671-2|RAD1 nc|ENSG00000113456|O60671-2|RAD1 MSMS AL20221201_MKP_PDAC_01 4 618.4252319335938 2 618.324262 1234.63397 NaN NaN NaN NaN NaN NaN NaN 103.96 1 97.78 97.28 98.28 -6.1757 0 0 0 0.93767 1 69655 69655 4.1895 0.90819 1 37301 2969 24833 25320 43908 43908 0.026039233404617335 LSCQHGNI 8 Unmodified _LSCQHGNI_ 0 0 0 ENST00000298767.9_1_10:88211805-88211838:-|nuORF ENST00000298767.9_1_10:88211805-88211838:-|nuORF ENST00000298767.9_1_10:88211805-88211838:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2069702148438 2 436.20817 870.401786 -0.13961 -6.0899E-05 -0.69077 -0.00030132 -0.83038 -0.00036222 436.20790076184375 51.988 0.27954 51.988 51.823 52.103 0 21 12 2 0 0 0 0.70294 1 28731 28731 16.942 0 1 4690200 37302 11538 24834 25321 43909 43909 -0.038598742196541025 LSCVMITY 8 Unmodified _LSCVMITY_ 0 0 0 REV__nc|ENSG00000183560|A6ND01-2|IZUMO1R REV__nc|ENSG00000183560|A6ND01-2|IZUMO1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2425231933594 2 465.227182 928.439811 NaN NaN NaN NaN NaN NaN NaN 65.512 1 65.512 65.012 66.012 0 0 0 0 0.97444 1 36540 36540 0.79363 0 1 + 37303 23355 24835 25322 43910 43910 -0.027271243492123176 LSDAQIYV 8 Unmodified _LSDAQIYV_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7403259277344 2 454.739825 907.465098 0.84148 0.00038265 0.2568 0.00011678 1.0983 0.00049943 454.7398215538182 49.796 0.3377 49.796 49.629 49.966 0 41 15 4 0 0 0 0.26159 1 27376 27376 60.39 3.8483 1 18928000 37304 3479 24836 25323 43911 43911 0.007663897692395949 LSDDKRQI 8 Unmodified _LSDDKRQI_ 0 0 0 nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2 nc|ENSG00000165410|Q9Y281-3|CFL2 nc|ENSG00000165410|Q9Y281-3|CFL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.7295837402344 2 487.766906 973.519259 0.59589 0.00029065 0.8278 0.00040377 1.4237 0.00069443 487.76739551611735 45.542 0.30297 40.587 40.41 40.713 -4.9549 29 20 2 0 0 0 8.7369 1 27962 27962 12.532 0 1 10362000 37305 7335 24837 25324 43912 43912 0.03143981920800343 LSDEAERDEY 10 Unmodified _LSDEAERDEY_ 0 0 0 nc|ENSG00000012223|P02788-2|LTF;ENSG00000012223|ENST00000231751|LTF nc|ENSG00000012223|P02788-2|LTF nc|ENSG00000012223|P02788-2|LTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7630004882812 2 613.762214 1225.50988 -0.38896 -0.00023873 0.060114 3.6895E-05 -0.32885 -0.00020183 613.762335617829 33.125 0.25666 33.125 33.029 33.285 0 25 12 3 0 0 0 0.62068 1 17346 17346 10.074 0 1 3713000 37306 460 24838 25325 43913 43913 -0.09385875946031774 LSDETGYHF 9 Unmodified _LSDETGYHF_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7586669921875 2 534.735271 1067.45599 0.55489 0.00029672 0.76214 0.00040754 1.317 0.00070426 534.7351293797653 51.58 0.47468 51.58 51.278 51.753 0 27 21 2 0 0 0 0.17275 1 28543 28543 21.747 9.2151 1 3565900 + 37307 18244 24839 25326 43914 43914 -0.07504003587109764 LSDFLEVL 8 Unmodified _LSDFLEVL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 935.509033203125 1 935.508425 934.501149 0.6561 0.00061379 1.205 0.0011273 1.8611 0.0017411 935.5089556763269 100.57 0.18143 94.391 94.291 94.472 -6.1757 23 11 3 0 0 0 0.1036 1 67240 67240 98.807 0 1 60433000 + 37308 19896 24840 25327 43915 43915 0.03127846946108548 LSDFLEVL 8 Unmodified _LSDFLEVL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.258056640625 2 468.257851 934.501149 0.62873 0.00029441 1.4156 0.00066287 2.0443 0.00095728 468.25792101381893 100.56 0.18143 94.381 94.291 94.472 -6.1757 19 11 2 0 0 0 0.21786 1 67260 67260 67.035 0 1 61911000 + 37309 19896 24840 25327 43916 43916 0.03127846946108548 LSDGDILF 8 Unmodified _LSDGDILF_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.4453735351562 1 879.445825 878.438549 0.11417 0.00010041 0.0038455 3.3819E-06 0.11802 0.00010379 879.4458999276577 90.583 0.35168 90.583 90.437 90.788 0 25 16 2 0 0 0 0.46494 1 50093 50093 38.151 13.477 1 704300 + 37310 20254 24841 25328 43917 43917 -0.0055329912207753296 LSDHEATL 8 Unmodified _LSDHEATL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2184753417969 2 443.219257 884.423961 NaN NaN NaN NaN NaN NaN NaN 24.608 1 24.608 24.108 25.108 0 0 0 0 0.77249 1 12582 12582 24.674 0 1 37311 10298 24842 25329 43918 43918 -0.022873712702221383 LSDHHIYL 8 Unmodified _LSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.25927734375 2 499.258717 996.50288 -0.034611 -1.728E-05 -0.27756 -0.00013858 -0.31218 -0.00015586 499.25855488240273 40.623 0.26721 40.623 40.491 40.758 0 38 14 3 0 0 0 0.11943 1 21816 21816 93.883 52.044 1 35152000 37312 6042 24843 25330 43919 43919 0.004489007547022084 LSDHHIYL 8 Unmodified _LSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2593994140625 2 499.258717 996.50288 0.17325 8.6498E-05 0.023632 1.1798E-05 0.19689 9.8297E-05 499.25867517798395 41.003 0.29788 40.7 40.543 40.841 -0.30304 34 14 3 0 0 0 0.07972 1 21666 21666 106.85 56.912 1 8467100 37313 6042 24843 25330 43920 43920 0.004489007547022084 LSDHHIYL 8 Unmodified _LSDHHIYL_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2589111328125 2 499.258717 996.50288 0.52438 0.0002618 -1.0974 -0.00054789 -0.57303 -0.00028609 499.25769023721637 45.238 0.74655 40.283 40.012 40.759 -4.9549 140 50 4 0 0 0 0.11943 3 27733 27597;27733;27879 93.883 44.214 1 95522000 37314 6042 24843 25330 43921;43922;43923 43922 0.004489007547022084 LSDKDQFSY 9 Unmodified _LSDKDQFSY_ 0 0 0 REV__ENSG00000150457|ENST00000382592|LATS2 REV__ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2615966796875 2 551.756204 1101.49785 0.84815 0.00046797 -1.329 -0.00073326 -0.4808 -0.00026528 551.751443312253 36.173 0.53828 31.98 31.664 32.202 -4.1928 62 32 3 0 0 0 0.25681 1 21159 21159 19.257 4.4187 1 26478000 + 37315 21025 24844 25331 43924 43924 -0.0488344789855546 LSDLAYILL 9 Unmodified _LSDLAYILL_ 0 0 0 ENSG00000173302|ENST00000309926|GPR148 ENSG00000173302|ENST00000309926|GPR148 ENSG00000173302|ENST00000309926|GPR148 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8026123046875 2 510.802426 1019.5903 0.33523 0.00017123 1.3012 0.00066466 1.6364 0.0008359 510.8027469842248 99.624 0.14269 93.448 93.365 93.508 -6.1757 19 8 3 0 0 0 0.010877 1 66412 66412 77.984 14.421 1 38631000 37316 8314 24845 25332 43925 43925 0.08128681905623125 LSDLGKLSY 9 Unmodified _LSDLGKLSY_ 0 0 0 ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8 ENST00000538768.2_1_16:31138259-31142577:+|nuORF ENST00000538768.2_1_16:31138259-31142577:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2748413085938 2 498.274032 994.533512 0.6206 0.00030923 1.2501 0.00062287 1.8707 0.0009321 498.27446100840734 36.86 0.18424 36.86 36.732 36.916 0 12 8 2 0 0 0 0.49272 1 19577 19577 7.9102 0 1 941690 37317 2149 24846 25333 43926 43926 0.03602634349101663 LSDLHKEWR 9 Unmodified _LSDLHKEWR_ 0 0 0 ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3154296875 2 592.314554 1182.61456 NaN NaN NaN NaN NaN NaN NaN 27.062 1 27.031 26.531 27.531 -0.031708 0 0 0 0.6557 1 13937 13937 10.824 1.4408 1 37318 13103 24847 25334 43927 43927 0.03055335111844215 LSDLHSTF 8 Unmodified _LSDLHSTF_ 0 0 0 REV__nc|ENSG00000078487|Q9H0M4-2|ZCWPW1 REV__nc|ENSG00000078487|Q9H0M4-2|ZCWPW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2306213378906 2 460.229625 918.444697 1.3176 0.00060639 -0.31685 -0.00014583 1.0007 0.00046057 460.23010023112585 42.765 0.36485 42.765 42.524 42.889 0 34 18 2 0 0 0 0.55032 1 23155 23155 30.225 2.596 1 6555200 + 37319 17628 24848 25335 43928 43928 -0.017787808905723068 LSDNWNLYEVE 11 Unmodified _LSDNWNLYEVE_ 0 0 0 REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.3173828125 2 691.317157 1380.61976 0.83139 0.00057475 -0.21875 -0.00015123 0.61264 0.00042353 691.3167447170798 58.229 0.3148 58.168 58.058 58.373 -0.060719 46 15 4 0 0 0 0.61059 1 31689 31689 10.8 2.0541 1 11250000 + 37320 22741 24849 25336 43929 43929 -0.0553245060689278 LSDPFARVF 9 Unmodified _LSDPFARVF_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.28369140625 2 526.282192 1050.54983 0.77418 0.00040744 0.19011 0.00010005 0.96428 0.00050749 526.2825486062835 80.652 0.19608 80.16 80.031 80.227 -0.49247 16 7 3 0 0 0 0.54444 1 44166 44166 4.756 0 1 598900 37321 3090 24850 25337 43930 43930 0.026577603058512977 LSDPFARVF 9 Unmodified _LSDPFARVF_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.282192 1050.54983 0.77418 0.00040744 0.19011 0.00010005 0.96428 0.00050749 526.2825486062835 80.652 0.19608 80.16 80.031 80.227 -0.49247 0 0 NaN 4.756 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 598900 37322 3090 24850 25337 0.026577603058512977 LSDPNSCPEQF 11 Unmodified _LSDPNSCPEQF_ 0 0 0 REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3 REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.1789245605469 3 412.844894 1235.51285 1.4447 0.00059644 -3.3639 -0.0013888 -1.9192 -0.00079233 412.84237815696963 58.383 0.25863 52.308 52.145 52.403 -6.0745 17 13 2 0 0 0 0.67892 1 37440 37440 6.2344 3.9816 1 7454500 + 37323 23278 24851 25338 43931 43931 -0.09548324092884286 LSDPPPSIPP 10 Unmodified _LSDPPPSIPP_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2755737304688 2 510.274032 1018.53351 NaN NaN NaN NaN NaN NaN NaN 94.33 1 93.91 93.41 94.41 -0.42044 0 0 0 0.97302 1 51539 51539 3.5965 1.019 1 + 37324 17830 24852 25339 43932 43932 0.02498634349092299 LSDPQLSGP 9 Unmodified _LSDPQLSGP_ 0 0 0 ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MULTI-MSMS AL20221201_MKP_PDAC_01 4 913.4605712890625 1 913.462538 912.455261 0.47683 0.00043557 -1.0726 -0.00097974 -0.59572 -0.00054417 913.4612874400497 35.062 0.50504 30.967 30.718 31.223 -4.0951 62 29 3 0 0 0 0.095405 2 20346 20219;20346 34.102 10.954 1 31362000 37325 5429 24853 25340 43933;43934 43934 -0.004467982361347822 LSDPTQYLI 9 Unmodified _LSDPTQYLI_ 0 0 0 REV__ENSG00000109436|ENST00000442267|TBC1D9 REV__ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2794799804688 2 525.279315 1048.54408 0.61724 0.00032422 -0.77279 -0.00040593 -0.15555 -8.1707E-05 525.279409993758 67.98 0.4222 67.98 67.743 68.165 0 48 20 3 0 0 0 0.2001 1 37877 37877 23.148 12.324 1 2332500 + 37326 18656 24854 25341 43935 43935 0.02174617003538515 LSDPVLQFL 9 Unmodified _LSDPVLQFL_ 0 0 0 REV__ENST00000470882.5_1_1:161146297-161146414:-|nuORF REV__ENST00000470882.5_1_1:161146297-161146414:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.29248046875 2 516.292225 1030.5699 0.38676 0.00019968 0.66159 0.00034157 1.0484 0.00054126 516.2923866124462 88.836 0.63882 88.332 88.068 88.707 -0.50423 82 27 4 0 0 0 0.026094 1 48584 48584 57.471 5.203 1 3174500 + 37327 27483 24855 25342 43936 43936 0.05583511245822592 LSDPVLQFL 9 Unmodified _LSDPVLQFL_ 0 0 0 REV__ENST00000470882.5_1_1:161146297-161146414:-|nuORF REV__ENST00000470882.5_1_1:161146297-161146414:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.292225 1030.5699 0.27775 0.0001434 0.87727 0.00045293 1.155 0.00059633 516.2925692329468 88.401 0.38815 88.401 88.188 88.576 0 0.034286 0.00012171 NaN 57.471 42 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1090400 + 37328 27483 24855 25342 0.05583511245822592 LSDQVYTLI 9 Unmodified _LSDQVYTLI_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2871704101562 2 526.28714 1050.55973 0.3961 0.00020846 -1.48 -0.0007789 -1.0839 -0.00057043 526.2855819578798 72.215 0.45865 72.215 71.904 72.362 0 41 20 3 0 0 0 0.23158 1 40202 40202 20.454 3.5113 1 1789000 + 37329 18514 24856 25343 43937 43937 0.036469035205982436 LSDQVYTLI 9 Unmodified _LSDQVYTLI_ 0 0 0 REV__ENSG00000106546|ENST00000242057|AHR REV__ENSG00000106546|ENST00000242057|AHR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.28714 1050.55973 0.5429 0.00028572 -0.092112 -4.8477E-05 0.45079 0.00023724 526.2868552161677 72.625 0.21189 72.149 72.083 72.294 -0.4761 -0.033374 0.00032764 NaN 20.454 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 686280 + 37330 18514 24856 25343 0.036469035205982436 LSDRWLHY 8 Unmodified _LSDRWLHY_ 0 0 0 REV__ENSG00000112212|ENST00000373161|TSPO2 REV__ENSG00000112212|ENST00000373161|TSPO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2581176757812 2 545.277441 1088.54033 -0.39828 -0.00021717 1.1185 0.00060988 0.7202 0.00039271 545.2777413297824 34.9 0.17024 34.9 34.827 34.998 0 13 8 2 0 0 0 8.7369 1 18399 18399 12.532 3.1841 1 1106600 + 37331 18795 24857 25344 43938 43938 -0.0004000797966909886 LSDSEDMRI 9 Unmodified _LSDSEDMRI_ 0 0 0 ENST00000232519.9_1_3:62319153-62319294:+|nuORF ENST00000232519.9_1_3:62319153-62319294:+|nuORF ENST00000232519.9_1_3:62319153-62319294:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7842407226562 2 533.247689 1064.48082 0.48104 0.00025651 -2.6372 -0.0014063 -2.1561 -0.0011498 533.2460813966374 68.282 0.2179 67.801 67.683 67.901 -0.48071 15 9 2 0 0 0 0.209 1 37267 37267 3.9444 0 1 757850 37332 11074 24858 25345 43939 43939 -0.04883691776012711 LSDSYSFDY 9 Unmodified _LSDSYSFDY_ 0 0 0 ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1542663574219 3 366.153833 1095.43967 0.073704 2.6987E-05 -1.2931 -0.00047346 -1.2194 -0.00044648 366.1545326823605 77.538 0.48123 77.538 77.29 77.771 0 130 35 5 0 0 0 0.54213 1 43036 43036 4.897 0 1 15537000 37333 6811 24859 25346 43940 43940 -0.10423129543846699 LSDSYSFDY 9 Unmodified _LSDSYSFDY_ 0 0 0 ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 ENSG00000161847|ENST00000617231|RAVER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1553039550781 3 366.153833 1095.43967 0.72534 0.00026559 0.21096 7.7243E-05 0.9363 0.00034283 366.15482769223075 85.237 0.59351 79.061 78.785 79.378 -6.1757 114 36 4 0 0 0 0.49766 1 56030 56030 7.609 0.13188 1 50789000 37334 6811 24859 25346 43941 43941 -0.10423129543846699 LSDVCKEKL 9 Unmodified _LSDVCKEKL_ 0 0 0 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 REV__nc|ENSG00000134369|Q8NEY1-5|NAV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2047119140625 2 517.781167 1033.54778 0.94607 0.00048986 -3.0058 -0.0015563 -2.0597 -0.0010665 518.281625435982 83.237 0.42404 77.061 76.829 77.253 -6.1757 28 22 2 0 0 0 0.13712 1 54584 54584 16.942 5.302 1 9752800 + 37335 19981 24860 25347 43942 43942 0.03234963505747146 LSDYSFIPN 9 Unmodified _LSDYSFIPN_ 0 0 0 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7911987304688 2 528.25584 1054.49713 0.57946 0.0003061 2.2332 0.0011797 2.8127 0.0014858 528.2569863648366 66.468 0.26842 66.468 66.348 66.616 0 17 11 2 0 0 0 0.20139 1 37017 37017 10.824 2.9138 1 1064200 37336 1479 24861 25348 43943 43943 -0.027942425476112476 LSEAIVTVI 9 Unmodified _LSEAIVTVI_ 0 0 0 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 ENSG00000159596|ENST00000372025|TMEM69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5631103515625 1 944.566275 943.558998 0.39185 0.00037013 -0.33313 -0.00031466 0.05872 5.5465E-05 944.5656801647201 88.31 0.19794 87.806 87.649 87.847 -0.50423 14 8 2 0 0 0 0.14602 1 48264 48264 28.487 0 1 570740 37337 6664 24862 25349 43944 43944 0.08496108871520391 LSEAMWFREK 10 Unmodified _LSEAMWFREK_ 0 0 0 ENST00000448876.5_1_3:185010151-185010244:+|nuORF ENST00000448876.5_1_3:185010151-185010244:+|nuORF ENST00000448876.5_1_3:185010151-185010244:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8854675292969 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 50.496 1 50.496 49.996 50.996 0 0 0 0 0.97556 1 27841 27841 3.3196 1.99 1 37338 13498 24863 25350 43945 43945 -0.002748713086020871 LSEAMWFREK 10 Unmodified _LSEAMWFREK_ 0 0 0 ENST00000448876.5_1_3:185010151-185010244:+|nuORF ENST00000448876.5_1_3:185010151-185010244:+|nuORF ENST00000448876.5_1_3:185010151-185010244:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.885498046875 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 78.463 1 78.515 78.015 79.015 0.052452 0 0 0 0.9997 1 43331 43331 0.69767 0.07084 1 37339 13498 24863 25350 43946 43946 -0.002748713086020871 LSEAVLQQV 9 Unmodified _LSEAVLQQV_ 0 0 0 ENSG00000107960|ENST00000224950|STN1;ENST00000466828.5_1_10:105642444-105658073:-|nuORF ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7796020507812 2 493.779482 985.544411 0.70443 0.00034783 -0.04855 -2.3973E-05 0.65588 0.00032386 493.77945029938286 46.049 0.27129 46.049 45.939 46.21 0 22 12 3 0 0 0 0.023164 1 25138 25138 60.39 15.983 1 4597400 37340 2537 24864 25351 43947 43947 0.05106036723395846 LSEAVLQQV 9 Unmodified _LSEAVLQQV_ 0 0 0 ENSG00000107960|ENST00000224950|STN1;ENST00000466828.5_1_10:105642444-105658073:-|nuORF ENSG00000107960|ENST00000224950|STN1 ENSG00000107960|ENST00000224950|STN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2812805175781 2 493.779482 985.544411 1.2229 0.00060386 -1.5498 -0.00076527 -0.32689 -0.00016141 493.77866291652515 53.614 0.21484 47.81 47.759 47.973 -5.8042 17 13 2 0 0 0 0.031062 1 33954 33954 54.774 6.4277 1 20616000 37341 2537 24864 25351 43948 43948 0.05106036723395846 LSEDDIWLK 9 Unmodified _LSEDDIWLK_ 0 0 0 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7881469726562 2 559.790047 1117.56554 NaN NaN NaN NaN NaN NaN NaN 96.052 1 96.052 95.552 96.552 0 0 0 0 0.85798 1 53083 53083 0.52476 0 1 37342 16301 24865 25352 43949 43949 0.011460020322374476 LSEDFKLSK 9 Unmodified _LSEDFKLSK_ 0 0 0 nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.5761108398438 2 533.792589 1065.57063 0.49768 0.00026566 0.46504 0.00024824 0.96273 0.0005139 533.7925764826869 71.874 0.20341 71.398 71.266 71.469 -0.47609 20 7 4 0 0 0 0.21052 1 39274 39274 6.7232 0 1 2626200 37343 5330 24866 25353 43950 43950 0.04046305894848956 LSEDGLIYL 9 Unmodified _LSEDGLIYL_ 0 0 0 REV__ENSG00000153107|ENST00000341068|ANAPC1 REV__ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7745361328125 2 511.773865 1021.53318 0.99575 0.0005096 -1.6658 -0.0008525 -0.67003 -0.0003429 511.7732785152524 86.155 0.59494 79.98 79.727 80.322 -6.1757 70 32 3 0 0 0 0.12841 1 56684 56684 30.225 0 1 26106000 + 37344 21151 24867 25354 43951 43951 0.02327214629235641 LSEEDMSL 8 Unmodified _LSEEDMSL_ 0 0 0 REV__ENST00000477340.5_1_20:62339420-62365174:+|nuORF REV__ENST00000477340.5_1_20:62339420-62365174:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2047424316406 2 462.204958 922.395363 0.063009 2.9123E-05 1.7912 0.00082788 1.8542 0.00085701 462.20570270724295 55.272 0.26533 55.272 55.149 55.414 0 21 11 2 0 0 0 0.80232 1 30721 30721 5.2307 0 1 3240200 + 37345 27609 24868 25355 43952 43952 -0.06893856961664824 LSEEFKQV 8 Unmodified _LSEEFKQV_ 0 0 0 ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 ENSG00000204033|ENST00000372113|LRIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.25830078125 2 490.258382 978.502212 0.12256 6.0084E-05 1.0066 0.00049351 1.1292 0.00055359 490.2588212828161 78.658 0.35955 78.172 77.99 78.349 -0.48596 32 13 3 0 0 0 0.72953 1 43145 43145 14.582 0 1 3795000 37346 10238 24869 25356 43953 43953 0.012100613149982564 LSEFTYLGL 9 Unmodified _LSEFTYLGL_ 0 0 0 REV__ENSG00000166507|ENST00000309979|NDST2 REV__ENSG00000166507|ENST00000309979|NDST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.777099609375 2 521.776408 1041.53826 0.38469 0.00020072 -0.084095 -4.3879E-05 0.3006 0.00015684 521.777005957188 87.242 0.31525 86.738 86.585 86.9 -0.50423 20 12 2 0 0 0 0.28047 1 47737 47737 18.135 1.1927 1 862440 + 37347 22128 24870 25357 43954 43954 0.019155184918417945 LSEHENVL 8 Unmodified _LSEHENVL_ 0 0 0 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 ENSG00000116661|ENST00000354287|FBXO2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.7786254882812 2 470.740357 939.46616 1.2477 0.00058733 0.36787 0.00017317 1.6155 0.0007605 470.7406161574086 40.971 0.2568 36.363 36.227 36.484 -4.6079 18 15 2 0 0 0 8.7369 1 24450 24450 8.5933 0 1 5909500 37348 3234 24871 25358 43955 43955 -0.005993958618546458 LSELKQVAI 9 Unmodified _LSELKQVAI_ 0 0 0 REV__ENSG00000105851|ENST00000496166|PIK3CG REV__ENSG00000105851|ENST00000496166|PIK3CG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7773132324219 2 500.8055 999.596446 0.78119 0.00039122 -2.0415 -0.0010224 -1.2603 -0.00063119 500.8048484124502 47.534 0.19598 47.534 47.427 47.623 0 14 8 2 0 0 0 0.15672 1 26053 26053 20.454 2.3073 1 1362300 + 37349 18466 24872 25359 43956 43956 0.09663200137140393 LSELLPAEAAP 11 Unmodified _LSELLPAEAAP_ 0 0 0 ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX ENST00000495483.5_2_1:161137139-161146869:+|nuORF ENST00000495483.5_2_1:161137139-161146869:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8096923828125 2 555.805697 1109.59684 0.91701 0.00050968 1.1021 0.00061255 2.0191 0.0011222 555.8062836205152 74.143 0.40022 73.667 73.487 73.887 -0.47588 41 16 3 0 0 0 0.28407 2 40527 40527;40629 27.629 6.0918 1 5036000 37350 5480 24873 25360 43957;43958 43957 0.04642575066304744 LSELLPAEAAP 11 Unmodified _LSELLPAEAAP_ 0 0 0 ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX ENST00000495483.5_2_1:161137139-161146869:+|nuORF ENST00000495483.5_2_1:161137139-161146869:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.805697 1109.59684 0.91701 0.00050968 1.1021 0.00061255 2.0191 0.0011222 555.8062836205152 74.143 0.40022 73.667 73.487 73.887 -0.47588 0 0 NaN 27.629 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5036000 37351 5480 24873 25360 0.04642575066304744 LSEMEPEESL 10 Unmodified _LSEMEPEESL_ 0 0 0 REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF REV__ENST00000473458.5_1_22:25240737-25320238:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3381958007812 2 582.260462 1162.50637 0.5886 0.00034272 -0.97001 -0.0005648 -0.38141 -0.00022208 582.259771700379 47.481 0.30177 47.481 47.384 47.686 0 15 13 2 0 0 0 0.22811 1 25994 25994 10.074 0 1 1412500 + 37352 22175 24874 25361 43959 43959 -0.0683826204426623 LSENQTPSL 9 Unmodified _LSENQTPSL_ 0 0 0 REV__nc|ENSG00000103723|Q13367-3|AP3B2 REV__nc|ENSG00000103723|Q13367-3|AP3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7499084472656 2 494.750921 987.48729 1.2112 0.00059923 -0.69021 -0.00034148 0.52095 0.00025774 494.75075584378214 37.748 0.4238 33.379 33.157 33.581 -4.3689 44 25 2 0 0 0 0.032796 1 22104 22104 53.833 4.2785 1 17103000 + 37353 18322 24875 25362 43960 43960 -0.006954305530030069 LSENQTPSL 9 Unmodified _LSENQTPSL_ 0 0 0 REV__nc|ENSG00000103723|Q13367-3|AP3B2 REV__nc|ENSG00000103723|Q13367-3|AP3B2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 494.750921 987.48729 -0.42722 -0.00021137 -3.253 -0.0016094 -3.6802 -0.0018208 494.7493088911631 33.683 0.13048 33.683 33.617 33.747 0 0.15221 -0.0022133 NaN 53.833 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2844300 + 37354 18322 24875 25362 -0.006954305530030069 LSENQTPSL 9 Unmodified _LSENQTPSL_ 0 0 0 REV__nc|ENSG00000103723|Q13367-3|AP3B2 REV__nc|ENSG00000103723|Q13367-3|AP3B2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 494.750921 987.48729 1.2112 0.00059923 -0.69021 -0.00034148 0.52095 0.00025774 494.75075584378214 37.748 0.4238 33.379 33.157 33.581 -4.3689 -0.15221 0.0003226 NaN 53.833 44 25 2 NaN NaN NaN NaN 0 NaN NaN 0 17103000 + 37355 18322 24875 25362 -0.006954305530030069 LSEPKLGASQI 11 Unmodified _LSEPKLGASQI_ 0 0 0 nc|ENSG00000266200|P54317|PNLIPRP2 nc|ENSG00000266200|P54317|PNLIPRP2 nc|ENSG00000266200|P54317|PNLIPRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8858032226562 3 381.552039 1141.63429 0.80132 0.00030575 -2.1238 -0.00081033 -1.3224 -0.00050458 381.55115032554374 17.18 0.14812 14.593 14.526 14.674 -2.5866 36 25 2 0 0 0 0.70147 1 8933 8933 4.1166 0.52957 1 3576100 37356 16598 24876 25363 43961 43961 0.06913666331956847 LSEPTWGRLCY 11 Unmodified _LSEPTWGRLCY_ 0 0 0 REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF REV__ENST00000429067.5_1_7:131011611-131012404:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2179565429688 3 442.216662 1323.62816 NaN NaN NaN NaN NaN NaN NaN 75.717 1 75.24 74.74 75.74 -0.47714 0 0 0 0.94184 1 41449 41449 1.2148 0.51716 1 + 37357 26947 24877 25364 43962 43962 -0.020711751712042314 LSERGSCF 8 Unmodified _LSERGSCF_ 0 0 0 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7058715820312 2 449.708002 897.401452 NaN NaN NaN NaN NaN NaN NaN 18.583 1 18.583 18.083 19.083 0 0 0 0 0.6528 1 9249 9249 30.637 3.7529 1 37358 5577 24878 25365 43963 43963 -0.05135293939497387 LSERGSCF 8 Unmodified _LSERGSCF_ 0 0 0 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.7070922851562 2 449.708002 897.401452 0.26827 0.00012064 -3.5596 -0.0016008 -3.2913 -0.0014801 449.7065600218176 32.354 0.16669 32.384 32.299 32.466 0.029743 10 6 2 0 0 0 0.38465 1 17002 17002 46.021 3.9264 1 1842700 37359 5577 24878 25365 43964 43964 -0.05135293939497387 LSERNKVKF 9 Unmodified _LSERNKVKF_ 0 0 0 ENST00000601728.1_1_19:23310047-23310578:-|nuORF ENST00000601728.1_1_19:23310047-23310578:-|nuORF ENST00000601728.1_1_19:23310047-23310578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8272094726562 2 560.827298 1119.64004 0.18544 0.000104 -0.39331 -0.00022058 -0.20787 -0.00011658 560.8270092949032 37.855 0.27831 37.583 37.44 37.719 -0.27133 43 13 4 0 0 0 0.46501 1 19983 19983 9.3831 2.66 1 53205000 37360 15811 24879 25366 43965 43965 0.08500809634256257 LSERRGWDQY 10 Unmodified _LSERRGWDQY_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;ENST00000393804.2_1_21:33000391-33000574:-|nuORF nc|ENSG00000072803|Q9UKB1-2|FBXW11 nc|ENSG00000072803|Q9UKB1-2|FBXW11 MSMS AL20221201_MKP_PDAC_01 4 436.9042053222656 3 437.214309 1308.6211 NaN NaN NaN NaN NaN NaN NaN 95.786 1 89.611 89.111 90.111 -6.1757 0 0 0 0.85122 1 63450 63450 8.9762 4.5701 1 37361 1093 24880 25367 43966 43966 -0.02086771727431369 LSESEYVGKV 10 Unmodified _LSESEYVGKV_ 0 0 0 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.1333618164062 2 555.787504 1109.56045 0.46289 0.00025727 0.82439 0.00045819 1.2873 0.00071546 555.7879669727253 92.69 0.43169 92.69 92.552 92.984 0 51 29 3 0 0 0 0.71123 1 51368 51368 1.6526 0.85899 1 811670 37362 16509 24881 25368 43967 43967 0.010056981696152434 LSESYLSL 8 Unmodified _LSESYLSL_ 0 0 0 REV__ENST00000378078.4_1_9:35750929-35750968:+|nuORF REV__ENST00000378078.4_1_9:35750929-35750968:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.2403869628906 2 456.239658 910.464763 NaN NaN NaN NaN NaN NaN NaN 82.008 1 75.833 75.333 76.333 -6.1757 0 0 0 0.90769 1 53854 53854 18.135 0 1 + 37363 26258 24882 25369 43968 43968 0.005949700493943055 LSEVLLTIY 9 Unmodified _LSEVLLTIY_ 0 0 0 REV__ENSG00000164794|ENST00000524391|KCNV1 REV__ENSG00000164794|ENST00000524391|KCNV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8079833984375 2 525.807708 1049.60086 0.33523 0.00017627 0.43123 0.00022675 0.76646 0.00040301 525.8079307741699 91.371 0.29718 90.877 90.734 91.031 -0.49457 31 13 3 0 0 0 0.49272 1 49912 49912 7.9102 3.1541 1 1109300 + 37364 21950 24883 25370 43969 43969 0.07804664560057972 LSEVTFRPLF 10 Unmodified _LSEVTFRPLF_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.049072265625 3 403.560646 1207.66011 0.27821 0.00011227 -1.4874 -0.00060025 -1.2092 -0.00048798 403.56010393085535 16.307 0.17526 13.751 13.638 13.813 -2.557 47 23 3 0 0 0 0.23952 1 8420 8420 1.4551 0.24029 1 3453400 37365 3420 24884 25371 43970 43970 0.06458560574219518 LSEYPEKY 8 Unmodified _LSEYPEKY_ 0 0 0 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7483520507812 2 514.75039 1027.48623 NaN NaN NaN NaN NaN NaN NaN 64.395 1 64.395 63.895 64.895 0 0 0 0 0.95973 1 35911 35911 8.5933 0.68312 1 37366 10500 24885 25372 43971 43971 -0.02641644921891384 LSFASTKWSI 10 Unmodified _LSFASTKWSI_ 0 0 0 REV__ENST00000348367.8_1_10:113913072-113913207:-|nuORF REV__ENST00000348367.8_1_10:113913072-113913207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5418701171875 3 380.541363 1138.60226 0.62424 0.00023755 0.7239 0.00027547 1.3481 0.00051302 380.541754673636 16.334 0.31865 13.777 13.644 13.963 -2.557 101 41 3 0 0 0 0.40136 1 8502 8502 18.721 2.9826 1 16075000 + 37367 25768 24886 25373 43972 43972 0.038502986487856106 LSFCFAPSSY 10 Unmodified _LSFCFAPSSY_ 0 0 0 ENST00000254323.6_1_19:13942265-13942868:+|nuORF ENST00000254323.6_1_19:13942265-13942868:+|nuORF ENST00000254323.6_1_19:13942265-13942868:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8399963378906 3 374.503921 1120.48993 0.060837 2.2784E-05 2.1588 0.00080848 2.2196 0.00083126 374.50554570668396 76 0.36253 76 75.812 76.174 0 38 16 3 0 0 0 0.69064 1 42228 42228 1.9064 0 1 2196300 37368 11162 24887 25374 43973 43973 -0.06549298419690786 LSFCHRRYWFW 11 Unmodified _LSFCHRRYWFW_ 0 0 0 REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.8834838867188 2 800.885155 1599.75576 -0.024188 -1.9372E-05 -2.1761 -0.0017428 -2.2002 -0.0017621 800.8832438185208 98.541 0.24278 98.347 98.271 98.514 -0.19321 17 7 4 0 0 0 0.73115 1 53831 53831 1.3295 1.0225 1 1886700 + 37369 26759 24888 25375 43974 43974 -0.020129897865217572 LSFCHRRYWFW 11 Unmodified _LSFCHRRYWFW_ 0 0 0 REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.8847045898438 2 800.885155 1599.75576 NaN NaN NaN NaN NaN NaN NaN 77.008 1 77.059 76.559 77.559 0.05011 0 0 0 0.94307 1 42497 42497 0.30703 0 1 + 37370 26759 24888 25375 43975 43975 -0.020129897865217572 LSFDYGQQ 8 Unmodified _LSFDYGQQ_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2193908691406 2 479.219257 956.423961 -0.34966 -0.00016757 -0.12256 -5.8735E-05 -0.47223 -0.0002263 479.21936907150103 28.815 0.19923 28.815 28.704 28.903 0 19 9 3 0 0 0 0.79669 1 14912 14912 8.5933 0 1 2036400 37371 5464 24889 25376 43976 43976 -0.05599371270238862 LSFDYGQQ 8 Unmodified _LSFDYGQQ_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2189025878906 2 479.219257 956.423961 NaN NaN NaN NaN NaN NaN NaN 30.729 1 30.627 30.127 31.127 -0.10269 0 0 0 0.95973 1 15954 15954 8.5933 0 1 37372 5464 24889 25376 43977 43977 -0.05599371270238862 LSFFKENY 8 Unmodified _LSFFKENY_ 0 0 0 ENSG00000129292|ENST00000395386|PHF20L1 ENSG00000129292|ENST00000395386|PHF20L1 ENSG00000129292|ENST00000395386|PHF20L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2595825195312 2 524.260925 1046.5073 0.44301 0.00023225 -1.0396 -0.00054504 -0.59663 -0.00031279 524.2605365125909 64.218 0.76003 64.218 63.779 64.539 0 108 32 4 0 0 0 0.78849 1 35612 35612 9.3474 0.75416 1 12286000 37373 4127 24890 25377 43978 43978 -0.014096348223802124 LSFFVMWY 8 Unmodified _LSFFVMWY_ 0 0 0 ENSG00000169255|ENST00000320474|B3GALNT1 ENSG00000169255|ENST00000320474|B3GALNT1 ENSG00000169255|ENST00000320474|B3GALNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7633056640625 2 546.764789 1091.51502 0.07206 3.94E-05 -2.3726 -0.0012972 -2.3005 -0.0012578 546.7631961980273 43.548 0.18688 43.548 43.418 43.605 0 13 8 2 0 0 0 0.78849 1 23645 23645 9.3474 0.75416 1 9118700 37374 7859 24891 25378 43979 43979 -0.027071988264424363 LSFGELLTQG 10 Unmodified _LSFGELLTQG_ 0 0 0 REV__ENSG00000183324|ENST00000331090|REC114 REV__ENSG00000183324|ENST00000331090|REC114 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2927856445312 2 532.784764 1063.55498 0.29748 0.00015849 -1.1328 -0.00060355 -0.83534 -0.00044506 532.7850163345137 64.076 0.28432 64.076 63.93 64.214 0 23 11 3 0 0 0 0.23558 1 35690 35690 8.1555 2.3951 1 702620 + 37375 23339 24892 25379 43980 43980 0.025740193777892273 LSFHKRSV 8 Unmodified _LSFHKRSV_ 0 0 0 REV__ENST00000374294.3_1_9:114431563-114431674:+|nuORF REV__ENST00000374294.3_1_9:114431563-114431674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2827758789062 2 487.282526 972.550499 0.23734 0.00011565 -0.79142 -0.00038564 -0.55407 -0.00026999 487.28225151076424 93.286 0.24502 93.286 93.184 93.429 0 22 16 2 0 0 0 0.78849 1 51586 51586 9.3474 1.4373 1 310900 + 37376 26176 24893 25380 43981 43981 0.06312599745569969 LSFMNRWHSKF 11 Unmodified _LSFMNRWHSKF_ 0 0 0 ENST00000466781.5_1_22:26861475-26862356:-|nuORF ENST00000466781.5_1_22:26861475-26862356:-|nuORF ENST00000466781.5_1_22:26861475-26862356:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.912841796875 3 484.911685 1451.71322 0.20372 9.8786E-05 0.53511 0.00025948 0.73883 0.00035827 484.91211042949584 52.523 0.3246 52.523 52.353 52.678 0 43 14 4 0 0 0 0.71036 1 29153 29153 1.3296 0.11481 1 12956000 37377 13762 24894 25381 43982 43982 0.005436150852347055 LSFNLMHLW 9 Unmodified _LSFNLMHLW_ 0 0 0 ENST00000342422.3_1_20:35240728-35240779:+|nuORF ENST00000342422.3_1_20:35240728-35240779:+|nuORF ENST00000342422.3_1_20:35240728-35240779:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.2013244628906 3 387.535555 1159.58484 1.158 0.00044876 -0.70406 -0.00027285 0.45391 0.00017591 387.5352839535155 76.063 0.25328 69.887 69.787 70.041 -6.1757 18 13 2 0 0 0 0.20728 1 49745 49745 5.2969 0.39987 1 11291000 37378 11982 24895 25382 43983 43983 0.01142679842155303 LSFPCSLKI 9 Unmodified _LSFPCSLKI_ 0 0 0 ENSG00000204518|ENST00000376221|AADACL4;AADACL4|p.A387V|1|0.1|ENSG00000204518|chr1:12666671-12666671|C/T|missense_variant ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2844848632812 2 504.283346 1006.55214 0.35353 0.00017828 2.5119 0.0012667 2.8655 0.001445 504.2846443465644 73.688 0.19127 73.732 73.612 73.803 0.043976 17 8 3 0 0 0 0.25681 1 40641 40641 19.257 2.3147 1 1728000 37379 10294 24896 25383 43984 43984 0.049124727192975115 LSFPCSLKI 9 Unmodified _LSFPCSLKI_ 0 0 0 ENSG00000204518|ENST00000376221|AADACL4;AADACL4|p.A387V|1|0.1|ENSG00000204518|chr1:12666671-12666671|C/T|missense_variant ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.8306274414062 2 504.283346 1006.55214 1.3664 0.00068907 -1.2865 -0.00064877 0.079907 4.0296E-05 504.28277808388964 95.584 0.30196 89.409 89.282 89.584 -6.1757 37 18 3 0 0 0 0.18118 1 63413 63413 19.257 2.3147 1 24189000 37380 10294 24896 25383 43985 43985 0.049124727192975115 LSFPGRSYKI 10 Unmodified _LSFPGRSYKI_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8890686035156 3 389.888874 1166.64479 -0.04389 -1.7112E-05 -0.17744 -6.9181E-05 -0.22133 -8.6293E-05 389.88878912309167 29.296 0.27829 29.326 29.154 29.432 0.030104 40 12 4 0 0 0 0.45406 1 15236 15236 18.721 2.1553 1 131610000 + 37381 20993 24897 25384 43986 43986 0.06813693777030494 LSFPNLFKF 9 Unmodified _LSFPNLFKF_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.81005859375 2 556.810585 1111.60662 1.0664 0.0005938 -1.6119 -0.00089753 -0.54548 -0.00030373 556.8097034906875 47.33 0.2084 47.291 47.177 47.385 -0.038643 14 9 2 0 0 0 0.55775 1 25515 25515 3.9444 1.3669 1 1755700 37382 10702 24898 25385 43987 43987 0.055278078623587135 LSFPYFTWHRR 11 Unmodified _LSFPYFTWHRR_ 0 0 0 REV__ENST00000354992.6_1_22:33669094-33669349:-|nuORF REV__ENST00000354992.6_1_22:33669094-33669349:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 755.3897705078125 2 755.391128 1508.7677 NaN NaN NaN NaN NaN NaN NaN 55.995 1 55.926 55.426 56.426 -0.068737 0 0 0 0.86932 1 30442 30442 8.7454 3.4485 1 + 37383 25799 24899 25386 43988 43988 0.033669502282918984 LSFQSRTVL 9 Unmodified _LSFQSRTVL_ 0 0 0 REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8702697753906 3 350.869591 1049.58694 0.038565 1.3531E-05 -2.1718 -0.00076202 -2.1332 -0.00074848 350.869790274788 31.532 0.72643 31.532 31.031 31.758 0 44 35 2 0 0 0 0.39143 1 16411 16411 12.873 4.7171 1 2398800 + 37384 28605 24900 25387 43989 43989 0.06413431851615314 LSFQSRTVL 9 Unmodified _LSFQSRTVL_ 0 0 0 REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF REV__ENST00000541834.1_1_12:121017123-121017560:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 350.869591 1049.58694 0.038565 1.3531E-05 -2.1718 -0.00076202 -2.1332 -0.00074848 350.869790274788 31.532 0.72643 31.532 31.031 31.758 0 0 0 NaN 12.873 44 35 2 NaN NaN NaN NaN 0 NaN NaN 0 2398800 + 37385 28605 24900 25387 0.06413431851615314 LSFRSFPVF 9 Unmodified _LSFRSFPVF_ 0 0 0 nc|ENSG00000039523|Q6ZS17|RIPOR1 nc|ENSG00000039523|Q6ZS17|RIPOR1 nc|ENSG00000039523|Q6ZS17|RIPOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2029113769531 3 367.202682 1098.58622 1.1862 0.00043557 -0.18655 -6.8501E-05 0.99964 0.00036707 367.53700870343744 44.232 0.47596 39.38 39.172 39.648 -4.852 52 33 2 0 0 0 0.37578 1 27134 27134 13.615 0 1 17964000 37386 16024 24901 25388 43990 43990 0.040866372025675446 LSFTHATDGL 10 Unmodified _LSFTHATDGL_ 0 0 0 REV__ENSG00000258890|ENST00000556440|CEP95 REV__ENSG00000258890|ENST00000556440|CEP95 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2683715820312 2 531.266739 1060.51892 0.34813 0.00018495 0.82909 0.00044047 1.1772 0.00062541 531.2670791935378 83.585 0.31441 83.585 83.444 83.759 0 34 16 3 0 0 0 0.54684 1 46314 46314 13.906 0 1 1408700 + 37387 24570 24902 25389 43991 43991 -0.008914377990549838 LSFYFFYFYFY 11 Unmodified _LSFYFFYFYFY_ 0 0 0 ENST00000458235.5_2_19:17937194-17937548:-|nuORF ENST00000458235.5_2_19:17937194-17937548:-|nuORF ENST00000458235.5_2_19:17937194-17937548:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 803.8698120117188 2 803.868297 1605.72204 NaN NaN NaN NaN NaN NaN NaN 83.089 1 83.151 82.651 83.651 0.062378 0 0 0 0.94307 1 45965 45965 0.30703 0.30703 1 37388 13625 24903 25390 43992 43992 -0.05659132797291022 LSGAVEQW 8 Unmodified _LSGAVEQW_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 889.4384765625 1 889.441409 888.434132 -0.47063 -0.00041859 -0.39319 -0.00034972 -0.86382 -0.00076831 889.4405186917587 41.489 0.26012 41.489 41.385 41.645 0 25 13 2 0 0 0 0.18875 2 22362 22362;22480 74.423 32.328 1 22111000 37389 5409 24904 25391 43993;43994 43993 -0.014547635450071539 LSGEDYRWWW 10 Unmodified _LSGEDYRWWW_ 0 0 0 ENSG00000100926|ENST00000261789|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3148193359375 2 699.317294 1396.62004 NaN NaN NaN NaN NaN NaN NaN 44.736 1 44.736 44.236 45.236 0 0 0 0 0.54588 1 24357 24357 24.021 6.5779 1 37390 1892 24905 25392 43995 43995 -0.06240986096349843 LSGEYQFYRSF 11 Unmodified _LSGEYQFYRSF_ 0 0 0 REV__ENSG00000107159|ENST00000378357|CA9 REV__ENSG00000107159|ENST00000378357|CA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2239685058594 3 466.222582 1395.64592 0.6137 0.00028612 0.077086 3.5939E-05 0.69078 0.00032206 466.2226890470178 73.526 0.35867 73.051 72.871 73.229 -0.47588 39 15 3 0 0 0 0.71938 1 40302 40302 2.4348 1.22 1 1312800 + 37391 18552 24906 25393 43996 43996 -0.036081366447206165 LSGEYQFYRSF 11 Unmodified _LSGEYQFYRSF_ 0 0 0 REV__ENSG00000107159|ENST00000378357|CA9 REV__ENSG00000107159|ENST00000378357|CA9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3027954101562 2 698.830234 1395.64592 0.18478 0.00012913 0.032929 2.3012E-05 0.21771 0.00015214 698.8297664861194 70.563 0.23928 70.086 70.009 70.248 -0.47735 42 24 2 0 0 0 0.29297 1 38568 38568 7.609 4.6137 1 5946100 + 37392 18552 24906 25393 43997 43997 -0.036081366447206165 LSGFTTSSIYT 11 Unmodified _LSGFTTSSIYT_ 0 0 0 REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7929077148438 2 588.792786 1175.57102 0.52128 0.00030692 -0.35668 -0.00021001 0.1646 9.6915E-05 588.7926243447597 53.929 0.4268 53.929 53.705 54.132 0 55 19 4 0 0 0 0.28407 2 29860 29860;29962 27.629 3.6082 1 35189000 + 37393 25747 24907 25394 43998;43999 43998 -0.009743191759525871 LSGFTTSSIYT 11 Unmodified _LSGFTTSSIYT_ 0 0 0 REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.792786 1175.57102 -0.025042 -1.4745E-05 1.9511 0.0011488 1.9261 0.0011341 589.2970708818673 54.619 0.21416 54.153 54.007 54.222 -0.46664 0.11179 0.0026291 NaN 27.629 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1769100 + 37394 25747 24907 25394 -0.009743191759525871 LSGHGRGG 8 Unmodified _LSGHGRGG_ 0 0 0 ENST00000568198.1_1_16:1393334-1393370:+|nuORF;ENST00000490842.5_1_7:97860543-97860603:-|nuORF ENST00000568198.1_1_16:1393334-1393370:+|nuORF ENST00000568198.1_1_16:1393334-1393370:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 740.3798828125 1 740.379811 739.372535 0.85105 0.0006301 -0.90345 -0.00066889 -0.052402 -3.8797E-05 740.3797027006239 101.38 0.12943 95.201 95.144 95.274 -6.1757 11 6 2 0 0 0 0.80311 1 68019 68019 4.756 0 1 11631000 37395 14268 24908 25395 44000 44000 -0.0075765045362459205 LSGHMLMPDA 10 Unmodified _LSGHMLMPDA_ 0 0 0 ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6 ENSG00000198759|ENST00000361306|EGFL6 ENSG00000198759|ENST00000361306|EGFL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2515258789062 2 536.25172 1070.48889 0.92923 0.0004983 -0.61553 -0.00033008 0.3137 0.00016822 536.2517324163704 54.566 0.56712 54.566 54.33 54.897 0 70 24 4 0 0 0 0.62068 1 30384 30384 10.074 10.074 1 5811400 37396 10145 24909 25396 44001 44001 -0.04353836060249705 LSGLALLRAR 10 Unmodified _LSGLALLRAR_ 0 0 0 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.305908203125 2 535.345658 1068.67676 0.79614 0.00042621 -1.3197 -0.00070647 -0.52352 -0.00028026 535.3454635268909 85.788 0.42767 79.613 79.479 79.907 -6.1757 32 23 2 0 0 0 0.22811 1 56634 56634 14.838 0 1 7934000 37397 6770 24910 25397 44002 44002 0.14517106250832512 LSGLILYNV 9 Unmodified _LSGLILYNV_ 0 0 0 REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2956848144531 2 496.294768 990.574983 0.3479 0.00017266 0.43585 0.00021631 0.78375 0.00038897 496.29484977949016 79.603 0.29801 79.658 79.523 79.821 0.05497 19 11 2 0 0 0 0.095405 1 44008 44008 34.102 5.6156 1 2273200 + 37398 28719 24911 25398 44003 44003 0.07931815108429419 LSGLILYNV 9 Unmodified _LSGLILYNV_ 0 0 0 REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2949829101562 2 496.294768 990.574983 1.3668 0.00067836 -0.11557 -5.7357E-05 1.2513 0.000621 496.2946324740449 88.011 0.47661 81.836 81.602 82.079 -6.1757 39 26 2 0 0 0 0.042911 1 58101 58101 48.346 12.302 1 10299000 + 37399 28719 24911 25398 44004 44004 0.07931815108429419 LSGLILYNV 9 Unmodified _LSGLILYNV_ 0 0 0 REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 496.294768 990.574983 0.3479 0.00017266 0.43585 0.00021631 0.78375 0.00038897 496.29484977949016 79.603 0.29801 79.658 79.523 79.821 0.05497 -0.16298 -0.00010632 NaN 34.102 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2273200 + 37400 28719 24911 25398 0.07931815108429419 LSGNKRAL 8 Unmodified _LSGNKRAL_ 0 0 0 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7 ENSG00000173110|ENST00000309758|HSPA6 ENSG00000173110|ENST00000309758|HSPA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.7598876953125 2 429.761426 857.5083 NaN NaN NaN NaN NaN NaN NaN 37.546 1 37.546 37.046 38.046 0 0 0 0 0.90769 1 19988 19988 18.135 0 1 37401 8286 24912 25399 44005 44005 0.07384624337169043 LSGNKRAL 8 Unmodified _LSGNKRAL_ 0 0 0 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7 ENSG00000173110|ENST00000309758|HSPA6 ENSG00000173110|ENST00000309758|HSPA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.7615051269531 2 429.761426 857.5083 -0.016835 -7.2348E-06 -0.39545 -0.00016995 -0.41228 -0.00017718 429.76126637227605 37.851 0.27831 37.58 37.44 37.719 -0.27133 32 13 3 0 0 0 0.40035 1 19883 19883 44.407 2.3125 1 21704000 37402 8286 24912 25399 44006 44006 0.07384624337169043 LSGNKRAL 8 Unmodified _LSGNKRAL_ 0 0 0 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7 ENSG00000173110|ENST00000309758|HSPA6 ENSG00000173110|ENST00000309758|HSPA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7616882324219 2 429.761426 857.5083 -0.0092367 -3.9696E-06 -0.089255 -3.8359E-05 -0.098492 -4.2328E-05 429.76152619552755 37.497 0.22142 37.514 37.371 37.592 0.01704 26 10 3 0 0 0 0.40035 1 19882 19882 44.407 4.4497 1 8453000 37403 8286 24912 25399 44007 44007 0.07384624337169043 LSGNKRAL 8 Unmodified _LSGNKRAL_ 0 0 0 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7 ENSG00000173110|ENST00000309758|HSPA6 ENSG00000173110|ENST00000309758|HSPA6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 429.761426 857.5083 1.0694 0.00045957 -0.7355 -0.00031609 0.33387 0.00014348 429.7610915947061 42.442 0.43386 37.758 37.592 38.026 -4.6846 0.1403 -0.00023206 NaN 44.407 78 28 4 NaN NaN NaN NaN 0 NaN NaN 0 107350000 37404 8286 24912 25399 0.07384624337169043 LSGNWHLLQF 10 Unmodified _LSGNWHLLQF_ 0 0 0 REV__ENSG00000145721|ENST00000274382|LIX1 REV__ENSG00000145721|ENST00000274382|LIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5486755371094 3 405.548741 1213.62439 0.1143 4.6354E-05 0.24301 9.8552E-05 0.35731 0.00014491 405.5488452360398 48.486 0.25212 48.443 48.32 48.573 -0.04369 33 12 3 0 0 0 0.63399 1 26140 26140 8.4443 3.7284 1 7218100 + 37405 20786 24913 25400 44008 44008 0.026125231172272834 LSGRVLRKLPF 11 Unmodified _LSGRVLRKLPF_ 0 0 0 ENSG00000071539|ENST00000166345|TRIP13 ENSG00000071539|ENST00000166345|TRIP13 ENSG00000071539|ENST00000166345|TRIP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.407470703125 2 643.408789 1284.80303 0.83794 0.00053914 -3.209 -0.0020647 -2.3711 -0.0015256 643.4070983552722 101.3 0.13115 95.122 95.046 95.178 -6.1757 13 7 2 0 0 0 0.71036 1 67940 67940 3.2813 0 1 18359000 37406 1057 24914 25401 44009 44009 0.17201612756116447 LSGSIHPQL 9 Unmodified _LSGSIHPQL_ 0 0 0 ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU ENST00000503952.5_1_4:128606686-128637588:+|nuORF ENST00000503952.5_1_4:128606686-128637588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2649536132812 2 476.266542 950.51853 0.00074892 3.5668E-07 -1.2078 -0.00057523 -1.207 -0.00057487 476.2659018873829 48.304 0.26324 48.304 48.17 48.433 0 20 12 2 0 0 0 0.2001 1 26476 26476 23.148 5.0134 1 3054300 37407 7129 24915 25402 44010 44010 0.04129187271757928 LSGSIHPQLI 10 Unmodified _LSGSIHPQLI_ 0 0 0 ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU ENST00000503952.5_1_4:128606686-128637588:+|nuORF ENST00000503952.5_1_4:128606686-128637588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3095092773438 2 532.808574 1063.60259 0.31878 0.00016985 -0.9254 -0.00049306 -0.60662 -0.00032321 532.808682561816 60.972 0.5476 60.928 60.672 61.22 -0.043507 109 27 5 0 0 0 0.1942 1 33281 33281 34.402 8.1336 1 107280000 37408 7129 24916 25403 44011 44011 0.07333718368658992 LSGTAKRF 8 Unmodified _LSGTAKRF_ 0 0 0 REV__ENST00000358011.8_2_1:38155551-38156178:-|nuORF REV__ENST00000358011.8_2_1:38155551-38156178:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.2556762695312 2 440.255977 878.497401 NaN NaN NaN NaN NaN NaN NaN 84.962 1 78.787 78.287 79.287 -6.1757 0 0 0 0.9192 1 55929 55929 16.942 0 1 + 37409 25862 24917 25404 44012 44012 0.05329221962904285 LSGVDEIFK 9 Unmodified _LSGVDEIFK_ 0 0 0 REV__ENSG00000205442|ENST00000543880|IZUMO3 REV__ENSG00000205442|ENST00000543880|IZUMO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2721862792969 2 504.274032 1006.53351 NaN NaN NaN NaN NaN NaN NaN 70.192 1 70.192 69.692 70.692 0 0 0 0 0.46757 1 39111 39111 16.942 0 1 + 37410 24228 24918 25405 44013 44013 0.030506343490856125 LSGVHKAK 8 Unmodified _LSGVHKAK_ 0 0 0 ENST00000482941.1_1_7:33169401-33192318:+|nuORF;ENST00000242067.10_1_7:33169401-33192318:+|nuORF ENST00000482941.1_1_7:33169401-33192318:+|nuORF ENST00000482941.1_1_7:33169401-33192318:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2587585449219 2 420.25852 838.502486 0.53309 0.00022404 0.54228 0.0002279 1.0754 0.00045193 420.2587573313085 23.922 0.36703 21.095 20.898 21.265 -2.8273 37 21 2 0 0 0 0.42686 2 12899 12899;13012 41.84 7.7372 1 5832600 37411 11109 24919 25406 44014;44015 44014 0.07677525825511111 LSGVLLSEYL 10 Unmodified _LSGVLLSEYL_ 0 0 0 REV__nc|ENSG00000104812|P13807-2|GYS1 REV__nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3114624023438 2 547.310615 1092.60668 0.66483 0.00036387 -0.24215 -0.00013253 0.42268 0.00023134 547.3105428968845 57.249 0.52038 57.249 56.922 57.443 0 53 22 4 0 0 0 0.074936 1 31908 31908 52.268 4.5197 1 22051000 + 37412 18375 24920 25407 44016 44016 0.0640776307170654 LSGVLLSEYL 10 Unmodified _LSGVLLSEYL_ 0 0 0 REV__nc|ENSG00000104812|P13807-2|GYS1 REV__nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3114013671875 2 547.310615 1092.60668 1.2536 0.00068612 0.81568 0.00044643 2.0693 0.0011326 547.3104371007485 63.918 0.54675 57.743 57.506 58.053 -6.1757 71 29 3 0 0 0 0.085354 1 41336 41336 49.933 11.757 1 42186000 + 37413 18375 24920 25407 44017 44017 0.0640776307170654 LSGVQAHF 8 Unmodified _LSGVQAHF_ 0 0 0 REV__ENSG00000257949|ENST00000397640|TEN1 REV__ENSG00000257949|ENST00000397640|TEN1 MSMS AL20221201_MKP_PDAC_01 4 429.7275390625 2 429.727052 857.439552 NaN NaN NaN NaN NaN NaN NaN 53.523 1 47.719 47.219 48.219 -5.8042 0 0 0 0.77249 1 33838 33838 24.674 1.5255 1 + 37414 24567 24921 25408 44018 44018 0.005129600374743859 LSGVSWPSE 9 Unmodified _LSGVSWPSE_ 0 0 0 ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.4647216796875 1 961.462538 960.455261 0.12322 0.00011847 0.98459 0.00094665 1.1078 0.0010651 961.4641886970624 58.505 0.19377 58.505 58.366 58.56 0 12 7 2 0 0 0 0.32871 1 32551 32551 15.847 0 1 635280 37415 10519 24922 25409 44019 44019 -0.02654798236130773 LSGVSWPSE 9 Unmodified _LSGVSWPSE_ 0 0 0 ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2341003417969 2 481.234907 960.455261 0.32664 0.00015719 0.20085 9.6656E-05 0.52749 0.00025385 481.23481506651683 58.44 0.31413 58.44 58.316 58.63 0 22 12 3 0 0 0 0.32871 1 32558 32558 15.847 4.2069 1 1300100 37416 10519 24922 25409 44020 44020 -0.02654798236130773 LSGVVRLS 8 Unmodified _LSGVVRLS_ 0 0 0 nc|ENSG00000080823|Q9UQ07-5|MOK;nc|ENSG00000080823|Q9UQ07-6|MOK;ENSG00000080823|ENST00000361847|MOK;nc|ENSG00000080823|Q9UQ07-3|MOK;ENST00000521249.1_1_14:102695628-102696024:-|nuORF;ENST00000521766.5_1_14:102695648-102699035:-|nuORF nc|ENSG00000080823|Q9UQ07-5|MOK nc|ENSG00000080823|Q9UQ07-5|MOK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.7595825195312 2 415.758352 829.502152 -0.090971 -3.7822E-05 2.0257 0.0008422 1.9347 0.00080438 415.75916918368455 37.572 0.16884 37.301 37.206 37.375 -0.27133 12 6 2 0 0 0 0.66338 1 19752 19752 20.454 0 1 966310 37417 1307 24923 25410 44021 44021 0.08058106105670504 LSHAWATL 8 Unmodified _LSHAWATL_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.7431640625 2 449.742702 897.470852 0.98645 0.00044365 0.44307 0.00019927 1.4295 0.00064292 449.7427289035075 42.94 0.35892 38.255 38.055 38.414 -4.6846 54 22 3 0 0 0 0.74163 1 25951 25951 13.508 0 1 32799000 + 37418 17359 24924 25411 44022 44022 0.018015330715684286 LSHDKHHSD 9 Unmodified _LSHDKHHSD_ 0 0 0 REV__ENST00000432668.1_1_7:22895910-22896102:+|nuORF REV__ENST00000432668.1_1_7:22895910-22896102:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1687927246094 3 359.1687 1074.48427 -0.44735 -0.00016067 0.51237 0.00018403 0.06502 2.3353E-05 359.1690245699147 48.797 0.31416 48.797 48.618 48.932 0 28 14 3 0 0 0 0.49272 1 26793 26793 4.897 1.31 1 3775900 + 37419 26990 24925 25412 44023 44023 -0.04999260887143464 LSHEESVSF 9 Unmodified _LSHEESVSF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7425537109375 2 517.743096 1033.47164 -0.29383 -0.00015213 -0.28241 -0.00014622 -0.57623 -0.00029834 517.7431660170756 34.978 0.5526 34.978 34.827 35.38 0 67 28 4 0 0 0 0.0082281 2 18412 18412;18521 92.822 48.415 1 45350000 37420 2373 24926 25413 44024;44025 44024 -0.04375717070047358 LSHEESVSF 9 Unmodified _LSHEESVSF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7434692382812 2 517.743096 1033.47164 0.81643 0.0004227 0.045341 2.3475E-05 0.86177 0.00044618 517.7431261044233 39.515 0.5287 35.064 34.796 35.325 -4.4509 73 31 3 0 0 0 0.010818 2 23551 23412;23551 78.149 36.055 1 90281000 37421 2373 24926 25413 44026;44027 44027 -0.04375717070047358 LSHEESVSF 9 Unmodified _LSHEESVSF_ 0 0 0 nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1 nc|ENSG00000105856|O60381-2|HBP1 nc|ENSG00000105856|O60381-2|HBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.743096 1033.47164 0.11094 5.744E-05 0.93389 0.00048351 1.0448 0.00054095 517.7435004244601 34.862 0.15462 34.889 34.818 34.973 0.027401 -0.087828 0.0009868 NaN 92.822 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 708810 37422 2373 24926 25413 -0.04375717070047358 LSHFCLNLI 9 Unmodified _LSHFCLNLI_ 0 0 0 ENST00000381477.7_1_9:5908730-5908850:+|nuORF ENST00000381477.7_1_9:5908730-5908850:+|nuORF ENST00000381477.7_1_9:5908730-5908850:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8604125976562 3 353.860039 1058.55829 2.1319 0.00075439 -0.37333 -0.00013211 1.7586 0.00062228 353.85994629632023 41.841 0.62361 37.233 36.894 37.517 -4.6079 80 39 3 0 0 0 0.41742 1 25061 25061 7.609 0.50723 1 12851000 37423 12620 24927 25414 44028 44028 0.03134990950820793 LSHFFQSY 8 Unmodified _LSHFFQSY_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.74658203125 2 514.745442 1027.47633 NaN NaN NaN NaN NaN NaN NaN 64.196 1 64.196 63.696 64.696 0 0 0 0 0.97348 1 35799 35799 5.7604 0.52976 1 + 37424 18936 24928 25415 44029 44029 -0.036307881366155925 LSHFHLHN 8 Unmodified _LSHFHLHN_ 0 0 0 REV__nc|ENSG00000107282|Q02410-2|APBA1 REV__nc|ENSG00000107282|Q02410-2|APBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2629089355469 2 502.756675 1003.4988 0.59888 0.00030109 1.2304 0.00061857 1.8292 0.00091966 503.26052968997254 46.897 0.79354 41.817 41.464 42.257 -5.0805 165 113 2 0 0 0 0.67481 1 28856 28856 19.439 2.4967 1 74581000 + 37425 18558 24929 25416 44030 44030 -0.0028114394835938583 LSHGHHFNI 9 Unmodified _LSHGHHFNI_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7890625 2 531.267407 1060.52026 0.34813 0.00018495 -0.42961 -0.00022824 -0.081481 -4.3288E-05 531.2670791935378 83.585 0.31441 83.585 83.444 83.759 0 34 16 3 0 0 0 0.209 1 46297 46297 7.2892 0 1 1408700 + 37426 17700 24930 25417 44031 44031 -0.007577589196444023 LSHGPFWAWSR 11 Unmodified _LSHGPFWAWSR_ 0 0 0 REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.8937683105469 3 448.55964 1342.65709 -0.30461 -0.00013664 0.78361 0.00035149 0.479 0.00021486 448.559999515059 16.497 0.16411 16.497 16.408 16.572 0 94 45 3 0 0 0 0.6889 1 8024 8024 2.4348 1.22 1 2083000 + 37427 27180 24931 25418 44032 44032 -0.000532697599282983 LSHGPFWAWSR 11 Unmodified _LSHGPFWAWSR_ 0 0 0 REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.5604248046875 3 448.55964 1342.65709 0.43998 0.00019736 0.94973 0.00042601 1.3897 0.00062337 448.56016043264276 16.695 0.092663 16.701 16.63 16.723 0.0050564 10 5 2 0 0 0 0.6889 1 8392 8392 2.4348 1.1051 1 1881100 + 37428 27180 24931 25418 44033 44033 -0.000532697599282983 LSHGPFWAWSR 11 Unmodified _LSHGPFWAWSR_ 0 0 0 REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 448.55964 1342.65709 -0.30461 -0.00013664 0.78361 0.00035149 0.479 0.00021486 448.559999515059 16.497 0.16411 16.497 16.408 16.572 0 -0.10165 -6.9749E-05 NaN 2.4348 94 45 3 NaN NaN NaN NaN 0 NaN NaN 0 2083000 + 37429 27180 24931 25418 -0.000532697599282983 LSHGPFWAWSR 11 Unmodified _LSHGPFWAWSR_ 0 0 0 REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF REV__ENST00000448841.5_1_10:104575630-104575705:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 448.55964 1342.65709 0.43998 0.00019736 0.94973 0.00042601 1.3897 0.00062337 448.56016043264276 16.695 0.092663 16.701 16.63 16.723 0.0050564 0.10165 0.0001538 NaN 2.4348 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1881100 + 37430 27180 24931 25418 -0.000532697599282983 LSHHEFFM 8 Unmodified _LSHHEFFM_ 0 0 0 ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA ENSG00000119125|ENST00000358399|GDA ENSG00000119125|ENST00000358399|GDA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2399291992188 2 524.23947 1046.46439 NaN NaN NaN NaN NaN NaN NaN 15.513 1 15.499 14.999 15.999 -0.014067 0 0 0 0.95607 1 7617 7617 9.3474 1.4373 1 37431 3413 24932 25419 44034 44034 -0.05698728151469368 LSHHKYYEVLE 11 Unmodified _LSHHKYYEVLE_ 0 0 0 REV__nc|ENSG00000134215|Q9UKW4-2|VAV3 REV__nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 709.3568725585938 2 709.359159 1416.70376 -0.79047 -0.00056072 -2.0564 -0.0014587 -2.8469 -0.0020195 709.3577149783953 31.986 0.14381 31.986 31.94 32.084 0 10 6 2 0 0 0 0.66968 1 16709 16709 7.1017 2.2047 1 718470 + 37432 19962 24933 25420 44035 44035 0.01208125280686545 LSHHQMMG 8 Unmodified _LSHHQMMG_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7114868164062 2 470.710022 939.405491 NaN NaN NaN NaN NaN NaN NaN 38.077 1 37.805 37.305 38.305 -0.27133 0 0 0 0.95607 1 20035 20035 9.3474 3.587 1 37433 1270 24934 25421 44036 44036 -0.06663527717432771 LSHIRVRSI 9 Unmodified _LSHIRVRSI_ 0 0 0 REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8926086425781 3 360.89273 1079.65636 1.8314 0.00066095 -0.61575 -0.00022222 1.2157 0.00043873 360.89256372183786 20.696 0.22759 18.003 17.921 18.148 -2.693 32 16 3 0 0 0 0.44883 1 11074 11074 10.151 0 1 2897800 + 37434 27649 24935 25422 44037 44037 0.11971935591031979 LSHKNSMLQE 10 Unmodified _LSHKNSMLQE_ 0 0 0 ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26;ANKRD26|p.E939Rfs*6|1|0.17|ENSG00000107890|chr10:27035635-27035636|-/T|frameshift_variant ENSG00000107890|ENST00000376087|ANKRD26 ENSG00000107890|ENST00000376087|ANKRD26 MSMS AL20221201_MKP_PDAC_01 4 396.2024841308594 3 396.201012 1185.58121 NaN NaN NaN NaN NaN NaN NaN 17.838 1 15.251 14.751 15.751 -2.5866 0 0 0 0.92825 1 9360 9360 3.5871 0.26742 1 37435 2528 24936 25423 44038 44038 -0.00416034722366021 LSHLDRISL 9 Unmodified _LSHLDRISL_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2097473144531 3 351.873224 1052.59784 0.96655 0.0003401 1.412 0.00049686 2.3786 0.00083696 351.8732002224422 24.515 0.36283 21.688 21.545 21.908 -2.8273 32 19 2 0 0 0 0.1773 1 13323 13323 18.373 0 1 3658600 + 37436 20707 24937 25424 44039 44039 0.07364834225904815 LSHPNILRF 9 Unmodified _LSHPNILRF_ 0 0 0 nc|ENSG00000070759|Q96S53-3|TESK2;ENSG00000070759|ENST00000372086|TESK2 nc|ENSG00000070759|Q96S53-3|TESK2 nc|ENSG00000070759|Q96S53-3|TESK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.548828125 3 366.213581 1095.61891 1.0725 0.00039278 -0.75467 -0.00027637 0.31786 0.00011641 366.2136793867385 46.471 0.077946 41.391 41.359 41.437 -5.0805 10 7 2 0 0 0 0.20572 1 28693 28693 10.151 1.995 1 26934000 37437 1038 24938 25425 44040 44040 0.0749284432542936 LSHPQQVIT 9 Unmodified _LSHPQQVIT_ 0 0 0 ENST00000477558.1_1_1:150049710-150054979:+|nuORF ENST00000477558.1_1_1:150049710-150054979:+|nuORF ENST00000477558.1_1_1:150049710-150054979:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2341918945312 2 511.785099 1021.55564 0.20021 0.00010247 -0.93879 -0.00048046 -0.73858 -0.00037799 511.7849773278019 53.172 0.20885 52.72 52.594 52.803 -0.45173 16 10 2 0 0 0 0.18882 1 28699 28699 15.847 1.9411 1 2233800 37438 13999 24939 25426 44041 44041 0.04572858817505221 LSHPTSSPF 9 Unmodified _LSHPTSSPF_ 0 0 0 REV__nc|ENSG00000134516|Q92608-2|DOCK2 REV__nc|ENSG00000134516|Q92608-2|DOCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7771911621094 2 486.742899 971.471246 -0.48858 -0.00023781 0.25636 0.00012478 -0.23222 -0.00011303 486.74294360289457 33.12 0.25526 33.12 32.968 33.223 0 29 12 3 0 0 0 0.49272 1 17269 17269 7.9102 0.62092 1 8670800 + 37439 29640 24940 25427 44042 44042 -0.01563091999230437 LSHQHSLPRA 10 Unmodified _LSHQHSLPRA_ 0 0 0 REV__ENST00000515035.5_1_5:149755479-149759349:+|nuORF REV__ENST00000515035.5_1_5:149755479-149759349:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.31201171875 2 573.312346 1144.61014 NaN NaN NaN NaN NaN NaN NaN 52.697 1 46.962 46.462 47.462 -5.7345 0 0 0 0.68942 1 33267 33267 17.113 3.2068 1 + 37440 28206 24941 25428 44043 44043 0.04361870688944691 LSHRLEDI 8 Unmodified _LSHRLEDI_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3;nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7692565917969 2 491.769448 981.524344 1.0074 0.00049541 2.3091 0.0011356 3.3165 0.001631 491.7701872476025 55.034 0.34954 49.113 48.825 49.175 -5.9211 47 21 3 0 0 0 0.42423 1 35005 35005 42.095 3.9434 1 42973000 37441 5186 24942 25429 44044 44044 0.032842857833998096 LSHRRRRR 8 Unmodified _LSHRRRRR_ 0 0 0 ENST00000376395.8_2_9:86322580-86322796:-|nuORF ENST00000376395.8_2_9:86322580-86322796:-|nuORF ENST00000376395.8_2_9:86322580-86322796:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.853759765625 2 568.852839 1135.69112 2.1697 0.0012342 -0.091886 -5.227E-05 2.0778 0.001182 568.8526943966272 94.864 0.92921 94.878 94.568 95.497 0.014244 97 34 5 0 0 0 0.81031 2 52719 52719;52826 0.79363 0.79363 1 77789000 37442 12493 24943 25430 44045;44046 44045 0.12870616242344113 LSHSHWIDF 9 Unmodified _LSHSHWIDF_ 0 0 0 ENST00000505306.5_1_17:48166908-48167121:+|nuORF ENST00000505306.5_1_17:48166908-48167121:+|nuORF ENST00000505306.5_1_17:48166908-48167121:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7572021484375 2 571.274898 1140.53524 0.35623 0.0002035 -0.28078 -0.0001604 0.075448 4.3101E-05 571.274663197839 78.5 0.40628 78.5 78.291 78.698 0 61 19 4 0 0 0 0.54444 1 43580 43580 4.756 0.81161 1 5931900 37443 14511 24944 25431 44047 44047 -0.029403118423033447 LSHSNIEIL 9 Unmodified _LSHSNIEIL_ 0 0 0 REV__ENST00000512024.5_1_5:893053-908577:+|nuORF REV__ENST00000512024.5_1_5:893053-908577:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.28515625 2 513.284931 1024.55531 0.6104 0.00031331 -0.4786 -0.00024566 0.1318 6.7652E-05 513.2847299090816 57.222 0.34899 57.222 57.022 57.371 0 41 15 3 0 0 0 0.49272 1 31917 31917 7.9102 0 1 10551000 + 37444 17495 24945 25432 44048 44048 0.044014390976599316 LSHVEVRVR 9 Unmodified _LSHVEVRVR_ 0 0 0 REV__ENST00000518820.1_1_8:143599542-143620974:+|nuORF REV__ENST00000518820.1_1_8:143599542-143620974:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8259887695312 2 547.825089 1093.63563 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.69 103.19 104.19 -0.048737 0 0 0 0.85798 1 57606 57606 0.52476 0.066424 1 + 37445 28253 24946 25433 44049 44049 0.0925534521136342 LSHVKQETF 9 Unmodified _LSHVKQETF_ 0 0 0 ENST00000494114.1_1_1:40536414-40537202:+|nuORF ENST00000494114.1_1_1:40536414-40537202:+|nuORF ENST00000494114.1_1_1:40536414-40537202:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.741943359375 2 544.790381 1087.56621 0.41012 0.00022343 -2.5861 -0.0014089 -2.176 -0.0011854 544.7892730645938 56.962 0.23237 56.962 56.855 57.087 0 12 9 2 0 0 0 0.18118 1 31659 31659 12.532 2.4576 1 1316000 37446 14326 24947 25434 44050 44050 0.025928414719373905 LSHWEQQW 8 Unmodified _LSHWEQQW_ 0 0 0 REV__ENSG00000130055|ENST00000374382|GDPD2 REV__ENSG00000130055|ENST00000374382|GDPD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2607421875 2 557.259248 1112.50394 NaN NaN NaN NaN NaN NaN NaN 75.967 1 75.49 74.99 75.99 -0.47714 0 0 0 0.97348 1 41587 41587 5.7604 1.0044 1 + 37447 19696 24948 25435 44051 44051 -0.04780884876390701 LSICWGAYV 9 Unmodified _LSICWGAYV_ 0 0 0 REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3 REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2520751953125 2 506.252046 1010.48954 0.69817 0.00035345 -1.0212 -0.00051699 -0.32304 -0.00016354 506.2510966905509 72.949 0.19115 72.949 72.861 73.052 0 20 8 3 0 0 0 0.37804 1 40654 40654 13.508 0 1 767280 + 37448 19572 24949 25436 44052 44052 -0.015286733488892423 LSIPTTHLI 9 Unmodified _LSIPTTHLI_ 0 0 0 ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80777785-80779717:-|nuORF ENSG00000107863|ENST00000396432|ARHGAP21 ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8012084960938 2 497.800217 993.585882 0.7828 0.00038968 1.6662 0.00082942 2.449 0.0012191 497.80086421603926 80.827 0.41821 74.652 74.278 74.696 -6.1757 31 22 2 0 0 0 0.10734 1 52899 52899 32.305 0.18852 1 15056000 37449 2523 24950 25437 44053 44053 0.0888321748270755 LSIRGTILF 9 Unmodified _LSIRGTILF_ 0 0 0 REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.4700622558594 2 510.316035 1018.61752 NaN NaN NaN NaN NaN NaN NaN 98.959 1 92.783 92.283 93.283 -6.1757 0 0 0 0.16996 1 65768 65768 34.402 0 1 + 37450 28988 24951 25438 44054 44054 0.10895210236674302 LSIRGTILF 9 Unmodified _LSIRGTILF_ 0 0 0 REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF REV__ENST00000572400.5_1_16:14234415-14234826:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.3161010742188 2 510.316035 1018.61752 NaN NaN NaN NaN NaN NaN NaN 98.972 1 92.796 92.296 93.296 -6.1757 0 0 0 0.083082 1 65781 65781 47.749 5.9091 1 + 37451 28988 24951 25438 44055 44055 0.10895210236674302 LSIRIPALL 9 Unmodified _LSIRIPALL_ 0 0 0 ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENST00000454465.1_1_2:87355723-87398314:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3347473144531 2 498.334227 994.653902 1.3027 0.00064919 0.26335 0.00013123 1.5661 0.00078043 498.33435486236954 96.021 0.15961 89.845 89.785 89.944 -6.1757 12 9 2 0 0 0 0.07087 1 63610 63610 39.95 6.5048 1 7142200 37452 13571 24952 25439 44056 44056 0.15636087133361798 LSIVRHLYK 9 Unmodified _LSIVRHLYK_ 0 0 0 REV__nc|ENSG00000150967|Q9NP78-6|ABCB9 REV__nc|ENSG00000150967|Q9NP78-6|ABCB9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.889404296875 3 376.901114 1127.68151 1.7263 0.00065065 0.070112 2.6425E-05 1.7964 0.00067708 376.9009323194082 37.313 0.26859 33.029 32.908 33.176 -4.2835 36 15 3 0 0 0 0.21473 1 21916 21916 2.4985 0.21571 1 15495000 + 37453 21043 24953 25440 44057 44057 0.12277990393613436 LSIYLTKQI 9 Unmodified _LSIYLTKQI_ 0 0 0 ENST00000333188.9_1_3:139076651-139076708:-|nuORF ENST00000333188.9_1_3:139076651-139076708:-|nuORF ENST00000333188.9_1_3:139076651-139076708:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.0380859375 2 539.828975 1077.6434 0.33918 0.0001831 0.22414 0.000121 0.56333 0.0003041 539.8290629552771 45.059 0.27249 40.207 40.069 40.342 -4.852 23 17 2 0 0 0 0.19613 1 27488 27488 4.3292 0 1 10335000 37454 11878 24954 25441 44058 44058 0.10768059688257381 LSKDLPFNL 9 Unmodified _LSKDLPFNL_ 0 0 0 REV__ENST00000492815.5_1_14:69676187-69701514:+|nuORF REV__ENST00000492815.5_1_14:69676187-69701514:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.31982421875 2 523.797675 1045.5808 0.19486 0.00010207 0.53335 0.00027937 0.72822 0.00038144 523.7977966542336 79.441 0.33678 79.496 79.31 79.647 0.05497 18 12 2 0 0 0 0.14225 1 43906 43906 24.021 2.4836 1 1792200 + 37455 17686 24955 25442 44059 44059 0.059829136200733046 LSKFLGTHWL 10 Unmodified _LSKFLGTHWL_ 0 0 0 ENSG00000146070|ENST00000274793|PLA2G7 ENSG00000146070|ENST00000274793|PLA2G7 ENSG00000146070|ENST00000274793|PLA2G7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2283325195312 3 401.229119 1200.66553 NaN NaN NaN NaN NaN NaN NaN 16.291 1 16.291 15.791 16.791 0 0 0 0 0.99248 1 7930 7930 0.62683 0 1 37456 5751 24956 25443 44060 44060 0.073222841567258 LSKGLYVITM 10 Unmodified _LSKGLYVITM_ 0 0 0 REV__ENST00000325110.10_1_5:43291048-43291090:-|nuORF REV__ENST00000325110.10_1_5:43291048-43291090:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.709716796875 2 562.822835 1123.63112 0.92845 0.00052255 2.7791 0.0015641 3.7075 0.0020867 563.3274984471251 82.873 0.090668 76.698 76.624 76.715 -6.1757 6 4 2 0 0 0 0.21571 1 54463 54463 19.257 0 1 5823600 + 37457 25547 24957 25444 44061 44061 0.07424699953548952 LSKGQQPF 8 Unmodified _LSKGQQPF_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7479553222656 2 452.747985 903.481417 NaN NaN NaN NaN NaN NaN NaN 32.396 1 32.396 31.896 32.896 0 0 0 0 0.95973 1 16922 16922 8.5933 0.68312 1 + 37458 17583 24958 25445 44062 44062 0.025815157259899024 LSKLKETV 8 Unmodified _LSKLKETV_ 0 0 0 ENSG00000173905|ENST00000470487|GOLIM4;ENST00000479415.1_1_3:167759128-167762642:-|nuORF ENSG00000173905|ENST00000470487|GOLIM4 ENSG00000173905|ENST00000470487|GOLIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2868041992188 2 459.286943 916.559333 0.33778 0.00015514 -0.24983 -0.00011475 0.087947 4.0393E-05 459.286741624371 49.154 0.32715 48.782 48.616 48.943 -0.37171 36 15 3 0 0 0 0.71527 1 26481 26481 15.847 0 1 6699700 37459 8375 24959 25446 44063 44063 0.09771528591363676 LSKLRRRWEL 10 Unmodified _LSKLRRRWEL_ 0 0 0 REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.9182739257812 2 678.91477 1355.81499 0.94361 0.00064063 1.5744 0.0010689 2.518 0.0017095 679.4144760333112 100.68 0.15248 100.64 100.56 100.71 -0.04216 10 5 3 0 0 0 0.72196 1 55955 55955 0.45834 0 1 7357600 + 37460 17925 24960 25447 44064 44064 0.15131229499320398 LSKLRRRWEL 10 Unmodified _LSKLRRRWEL_ 0 0 0 REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF REV__ENST00000456222.1_1_3:42605456-42610538:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 678.91477 1355.81499 0.94361 0.00064063 1.5744 0.0010689 2.518 0.0017095 679.4144760333112 100.68 0.15248 100.64 100.56 100.71 -0.04216 0 0 NaN 0.45834 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 7357600 + 37461 17925 24960 25447 0.15131229499320398 LSKMEVYR 8 Unmodified _LSKMEVYR_ 0 0 0 REV__ENSG00000203867|ENST00000369519|RBM20 REV__ENSG00000203867|ENST00000369519|RBM20 MSMS AL20221201_MKP_PDAC_01 4 513.2761840820312 2 513.276052 1024.53755 NaN NaN NaN NaN NaN NaN NaN 77.157 1 70.981 70.481 71.481 -6.1757 0 0 0 0.786 1 50460 50460 24.021 1.2843 1 + 37462 24123 24961 25448 44065 44065 0.02626400571148224 LSKMHQRLIF 10 Unmodified _LSKMHQRLIF_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.9118957519531 3 424.913025 1271.71725 -0.004891 -2.0783E-06 -1.6914 -0.00071868 -1.6963 -0.00072076 424.9128448943363 33.052 0.44783 33.082 32.784 33.232 0.029743 64 19 5 0 0 0 0.51153 1 17362 17362 15.739 0.90072 1 39292000 37463 1832 24962 25449 44066 44066 0.09225704578943805 LSKMMLMS 8 Unmodified _LSKMMLMS_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;nc|ENSG00000008394|P10620-2|MGST1;ENST00000539708.5_1_12:16507186-16513330:+|nuORF;ENST00000539036.5_1_12:16500588-16536519:+|nuORF;ENST00000538857.1_1_12:16507186-16536519:+|nuORF;ENST00000537878.5_1_12:16500588-16507345:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7371520996094 2 470.73686 939.459166 0.48055 0.00022621 -0.52465 -0.00024697 -0.044098 -2.0758E-05 470.73658911554065 89.737 0.22253 89.235 89.102 89.324 -0.50171 16 10 2 0 0 0 0.80975 1 49051 49051 0.79363 0 1 311910 37464 389 24963 25450 44067 44067 -0.012984913299419532 LSKNQGLLS 9 Unmodified _LSKNQGLLS_ 0 0 0 REV__LTR88b_dup1331|chr15:56885665-56885983:-|2.74277538430047|0.0198811332927147|7.11|179.0|3|2|sense REV__LTR88b_dup1331|chr15:56885665-56885983:-|2.74277538430047|0.0198811332927147|7.11|179.0|3|2|sense MSMS AL20221201_MKP_PDAC_01 4 480.281005859375 2 480.279649 958.544745 NaN NaN NaN NaN NaN NaN NaN 49.71 1 44.171 43.671 44.671 -5.5391 0 0 0 0.08368 1 31088 31088 47.594 3.6125 1 + 37465 29456 24964 25451 44068 44068 0.06381456443239131 LSKPNWQP 8 Unmodified _LSKPNWQP_ 0 0 0 ENST00000565971.5_1_16:28844600-28844660:+|nuORF ENST00000565971.5_1_16:28844600-28844660:+|nuORF ENST00000565971.5_1_16:28844600-28844660:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2394409179688 2 485.261259 968.507966 -0.21803 -0.0001058 -1.8738 -0.00090927 -2.0918 -0.0010151 485.2606788064665 24.786 0.10576 24.786 24.718 24.823 0 6 4 2 0 0 0 8.7369 1 12680 12680 2.8892 0 1 250870 37466 15412 24965 25452 44069 44069 0.022452046173157214 LSKPTAPQRAL 11 Unmodified _LSKPTAPQRAL_ 0 0 0 ENST00000464324.5_1_11:64494776-64507712:-|nuORF;ENSG00000068831|ENST00000394432|RASGRP2;nc|ENSG00000068831|Q7LDG7-4|RASGRP2;ENST00000421556.5_1_11:64494776-64511570:-|nuORF;nc|ENSG00000068831|Q7LDG7-2|RASGRP2 ENST00000464324.5_1_11:64494776-64507712:-|nuORF ENST00000464324.5_1_11:64494776-64507712:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5718688964844 3 394.571545 1180.69281 NaN NaN NaN NaN NaN NaN NaN 60.174 1 60.121 59.621 60.621 -0.053062 0 0 0 0.68506 1 32814 32814 17.572 2.0335 1 37467 988 24966 25453 44070 44070 0.10968767697090698 LSKQKTHPMT 10 Unmodified _LSKQKTHPMT_ 0 0 0 REV__ENST00000555765.5_1_14:35182472-35182538:-|nuORF REV__ENST00000555765.5_1_14:35182472-35182538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8816223144531 3 390.881502 1169.62268 0.89936 0.00035154 -0.06531 -2.5529E-05 0.83405 0.00032602 390.88131298686045 66.166 0.27815 66.176 66.064 66.342 0.0095673 34 13 3 0 0 0 0.66569 1 36299 36299 3.5871 0 1 10270000 + 37468 28775 24967 25454 44071 44071 0.044651460369323104 LSKQVFVF 8 Unmodified _LSKQVFVF_ 0 0 0 REV__ENST00000396045.7_1_7:36894090-36894324:-|nuORF REV__ENST00000396045.7_1_7:36894090-36894324:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.2856750488281 2 484.284203 966.553853 NaN NaN NaN NaN NaN NaN NaN 99.67 1 93.495 92.995 93.995 -6.1757 0 0 0 0.73801 1 66446 66446 26.341 1.6674 1 + 37469 26494 24968 25455 44072 44072 0.06923849799568416 LSKTETPPAS 10 Unmodified _LSKTETPPAS_ 0 0 0 REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7767944335938 2 515.774396 1029.53424 0.45103 0.00023263 1.9993 0.0010312 2.4504 0.0012638 515.7769538475787 71.598 0.43633 71.122 70.927 71.363 -0.47609 40 17 3 0 0 0 0.52888 1 39147 39147 14.838 1.7958 1 1842500 + 37470 24031 24969 25456 44073 44073 0.020654289981166585 LSKTWNTQT 9 Unmodified _LSKTWNTQT_ 0 0 0 REV__ENST00000426841.6_1_6:138768126-138820433:-|nuORF REV__ENST00000426841.6_1_6:138768126-138820433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7804565429688 2 539.780013 1077.54547 3.3888 0.0018292 -1.5243 -0.00082278 1.8645 0.0010064 539.7782023423944 97.897 0.31197 97.879 97.733 98.045 -0.018188 22 10 3 0 0 0 0.28023 1 54417 54417 18.146 0.011366 1 1621800 + 37471 20077 24970 25457 44074 44074 0.009802510922781948 LSKWHLNL 8 Unmodified _LSKWHLNL_ 0 0 0 ENSG00000011454|ENST00000373647|RABGAP1;nc|ENSG00000188394|Q9Y3P9-2|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 ENSG00000011454|ENST00000373647|RABGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7930908203125 2 505.792727 1009.5709 NaN NaN NaN NaN NaN NaN NaN 91.803 1 91.803 91.303 92.303 0 0 0 0 0.97444 1 50767 50767 0.79363 0 1 37472 449 24971 25458 44075 44075 0.06649770405351774 LSKYEEIFV 9 Unmodified _LSKYEEIFV_ 0 0 0 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3031005859375 2 564.30279 1126.59103 0.5299 0.00029902 0.78793 0.00044463 1.3178 0.00074365 564.3029380195495 57.834 0.28712 57.834 57.681 57.968 0 24 12 3 0 0 0 0.34999 1 32167 32167 14.838 0.93222 1 2207400 37473 6149 24972 25459 44076 44076 0.03279476554644134 LSLAQIDLN 9 Unmodified _LSLAQIDLN_ 0 0 0 ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-10|CD44;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-15|CD44;nc|ENSG00000026508|P16070-19|CD44;ENST00000528086.5_1_11:35160721-35231518:+|nuORF ENSG00000026508|ENST00000428726|CD44 ENSG00000026508|ENST00000428726|CD44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7804260253906 2 493.779482 985.544411 1.293 0.00063845 -0.92965 -0.00045904 0.36335 0.00017941 493.77923453386194 90.821 0.54987 84.646 84.389 84.939 -6.1757 42 32 2 0 0 0 0.06294 1 59964 59964 41.84 7.4379 1 7415900 37474 561 24973 25460 44077 44077 0.051060367233731085 LSLAWEHPF 9 Unmodified _LSLAWEHPF_ 0 0 0 nc|ENSG00000065675|Q04759-3|PRKCQ;nc|ENSG00000065675|Q04759-2|PRKCQ;ENSG00000065675|ENST00000263125|PRKCQ nc|ENSG00000065675|Q04759-3|PRKCQ nc|ENSG00000065675|Q04759-3|PRKCQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2843017578125 2 550.282192 1098.54983 0.95734 0.00052681 -2.8078 -0.0015451 -1.8505 -0.0010183 550.2798037005551 50.044 0.8457 44.505 44.125 44.971 -5.5391 92 54 2 0 0 0 0.2001 1 31201 31201 23.148 3.8914 1 45604000 37475 914 24974 25461 44078 44078 0.004497603058325694 LSLCSELDGR 10 Unmodified _LSLCSELDGR_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1;ENST00000463241.2_1_11:62344075-62344783:-|nuORF;ENST00000526409.5_1_11:62342279-62344783:-|nuORF ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.19384765625 3 364.849979 1091.52811 1.5782 0.00057579 -1.4034 -0.00051204 0.17473 6.3751E-05 364.8497737268468 19.179 0.41361 16.523 16.329 16.743 -2.6564 62 28 4 0 0 0 0.65773 1 10265 10265 4.4062 0 1 23449000 37476 5978 24975 25462 44079 44079 -0.013994125050203365 LSLDIGTEVF 10 Unmodified _LSLDIGTEVF_ 0 0 0 ENSG00000204386|ENST00000375631|NEU1;ENST00000480384.1_1_6:31828203-31830565:-|nuORF ENSG00000204386|ENST00000375631|NEU1 ENSG00000204386|ENST00000375631|NEU1 MSMS AL20221201_MKP_PDAC_01 4 547.2944946289062 2 547.292422 1092.57029 NaN NaN NaN NaN NaN NaN NaN 56.32 1 50.343 49.843 50.843 -5.9769 0 0 0 0.54588 1 35927 35927 24.021 3.5669 1 37477 10276 24976 25463 44080 44080 0.0277088617501704 LSLDRPYG 8 Unmodified _LSLDRPYG_ 0 0 0 REV__ENSG00000008516|ENST00000336577|MMP25 REV__ENSG00000008516|ENST00000336577|MMP25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7456665039062 2 460.745442 919.476331 0.95064 0.000438 -0.12978 -5.9794E-05 0.82087 0.00037821 460.74522982213665 38.179 0.43322 33.81 33.531 33.964 -4.3689 39 25 2 0 0 0 0.52622 1 22503 22503 32.305 32.305 1 21134000 + 37478 17026 24977 25464 44081 44081 0.013372118633810715 LSLDRPYG 8 Unmodified _LSLDRPYG_ 0 0 0 REV__ENSG00000008516|ENST00000336577|MMP25 REV__ENSG00000008516|ENST00000336577|MMP25 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 460.745442 919.476331 -0.10941 -5.0412E-05 -0.72526 -0.00033416 -0.83468 -0.00038457 460.74503835229297 33.959 0.32037 33.959 33.783 34.103 0 0.074508 -0.00016676 NaN 32.305 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4972200 + 37479 17026 24977 25464 0.013372118633810715 LSLDTFVRNI 10 Unmodified _LSLDTFVRNI_ 0 0 0 THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|63|1|anti-sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|63|1|anti-sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|63|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2225341796875 3 393.224034 1176.65027 1.3188 0.00051857 -0.59234 -0.00023292 0.72641 0.00028564 393.5584639271745 21.781 0.46292 19.046 18.844 19.307 -2.7348 81 25 4 0 0 0 0.46077 1 11728 11728 18.373 0 1 22712000 37480 30188 24978 25465 44082 44082 0.06901372568859188 LSLEELHI 8 Unmodified _LSLEELHI_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2664489746094 2 477.26875 952.522947 NaN NaN NaN NaN NaN NaN NaN 78.501 1 78.015 77.515 78.515 -0.48596 0 0 0 0.88073 1 42996 42996 19.439 0 1 + 37481 21763 24979 25466 44083 44083 0.04478651694671498 LSLERRRY 8 Unmodified _LSLERRRY_ 0 0 0 ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.819580078125 2 546.817264 1091.61998 0.36135 0.00019759 2.3506 0.0012853 2.7119 0.0014829 546.8187383542526 61.342 0.26265 61.342 61.171 61.433 0 22 11 3 0 0 0 0.80143 1 34225 34225 5.7604 0 1 909040 37482 10886 24980 25467 44084 44084 0.07783058694326428 LSLERRRY 8 Unmodified _LSLERRRY_ 0 0 0 ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.817264 1091.61998 0.36135 0.00019759 2.3506 0.0012853 2.7119 0.0014829 546.8187383542526 61.342 0.26265 61.342 61.171 61.433 0 0.049033 0.00028131 NaN 5.7604 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 909040 37483 10886 24980 25467 0.07783058694326428 LSLERRRY 8 Unmodified _LSLERRRY_ 0 0 0 ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A ENSG00000272031|ENST00000606888|ANKRD34A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.817264 1091.61998 0.088352 4.8313E-05 1.7355 0.000949 1.8238 0.00099731 546.8177325032409 61.731 0.29011 61.244 61.097 61.387 -0.48764 -0.049033 -0.00039134 NaN 5.7604 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2282300 37484 10886 24980 25467 0.07783058694326428 LSLFAFSLP 9 Unmodified _LSLFAFSLP_ 0 0 0 ENST00000360315.7_1_19:19616298-19616775:+|nuORF ENST00000360315.7_1_19:19616298-19616775:+|nuORF ENST00000360315.7_1_19:19616298-19616775:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.5617065429688 1 994.560795 993.553519 1.2228 0.0012162 -0.31756 -0.00031584 0.90525 0.00090033 994.5604844432328 100.12 0.31785 93.946 93.804 94.122 -6.1757 46 19 4 0 0 0 0.16226 1 66999 66999 26.884 3.7352 1 231110000 37485 12163 24981 25468 44085 44085 0.056484300797023934 LSLGATFPAL 10 Unmodified _LSLGATFPAL_ 0 0 0 REV__nc|ENSG00000100336|Q9BPW4-3|APOL4 REV__nc|ENSG00000100336|Q9BPW4-3|APOL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2882690429688 2 495.286943 988.559333 0.8341 0.00041312 0.26869 0.00013308 1.1028 0.0005462 495.28709894936014 76.034 1.05 69.858 69.009 70.059 -6.1757 76 56 2 0 0 0 0.2178 1 49477 49477 32.305 1.0371 1 12830000 + 37486 18046 24982 25469 44086 44086 0.0645952859136969 LSLGELQEL 9 Unmodified _LSLGELQEL_ 0 0 0 ENST00000484824.2_1_20:32257487-32262158:-|nuORF;ENST00000606699.5_1_20:32258166-32262158:-|nuORF;nc|ENSG00000125967|Q96P71-3|NECAB3;ENST00000488489.5_1_20:32247922-32262169:-|nuORF;nc|ENSG00000125967|Q96P71-2|NECAB3;ENSG00000125967|ENST00000246190|NECAB3 ENST00000484824.2_1_20:32257487-32262158:-|nuORF ENST00000484824.2_1_20:32257487-32262158:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2820739746094 2 501.279315 1000.54408 NaN NaN NaN NaN NaN NaN NaN 90.363 1 90.363 89.863 90.863 0 0 0 0 0.6306 1 49993 49993 11.64 0 1 37487 3915 24983 25470 44087 44087 0.04382617003534506 LSLHDRKERH 10 Unmodified _LSLHDRKERH_ 0 0 0 nc|ENSG00000140153|Q8TBZ3-7|WDR20;ENST00000299135.6_1_14:102606435-102676214:+|nuORF;nc|ENSG00000140153|Q8TBZ3-4|WDR20;nc|ENSG00000140153|Q8TBZ3-5|WDR20;nc|ENSG00000140153|Q8TBZ3-6|WDR20;ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20 nc|ENSG00000140153|Q8TBZ3-7|WDR20 nc|ENSG00000140153|Q8TBZ3-7|WDR20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8560791015625 2 645.854909 1289.69527 0.51119 0.00033015 1.803 0.0011645 2.3142 0.0014946 645.8560771100339 62.139 0.25816 61.652 61.529 61.788 -0.48764 27 11 3 0 0 0 0.67033 1 33836 33836 6.2058 1.3088 1 3352700 37488 16232 24984 25471 44088 44088 0.06200616154751515 LSLHNITF 8 Unmodified _LSLHNITF_ 0 0 0 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7631530761719 2 472.763635 943.512717 NaN NaN NaN NaN NaN NaN NaN 45.274 1 45.274 44.774 45.774 0 0 0 0 0.97444 1 24668 24668 5.2307 0.47466 1 37489 1134 24985 25472 44089 44089 0.038700887600725764 LSLILHLV 8 Unmodified _LSLILHLV_ 0 0 0 REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.3024597167969 2 454.302396 906.590239 0.71303 0.00032393 -0.36237 -0.00016463 0.35065 0.0001593 454.30212001454146 59.162 0.2024 59.101 58.964 59.166 -0.060719 13 9 2 0 0 0 0.72953 1 32254 32254 14.582 0 1 1880700 + 37490 27247 24986 25473 44090 44090 0.13320726696269958 LSLIPAWAF 9 Unmodified _LSLIPAWAF_ 0 0 0 ENST00000464104.5_1_9:98997744-99012284:-|nuORF;ENSG00000130948|ENST00000375263|HSD17B3;nc|ENSG00000130948|P37058-2|HSD17B3 ENST00000464104.5_1_9:98997744-99012284:-|nuORF ENST00000464104.5_1_9:98997744-99012284:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7562561035156 2 509.292028 1016.5695 1.3106 0.00066748 0.060504 3.0814E-05 1.3711 0.0006983 509.2923538037902 47.478 0.37951 42.244 42.072 42.451 -5.2339 31 20 2 0 0 0 0.17666 1 29506 29506 4.756 0 1 13119000 37491 4280 24987 25474 44091 44091 0.06188136316609416 LSLKREFLEQE 11 Unmodified _LSLKREFLEQE_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.37939453125 2 696.380091 1390.74563 0.85486 0.00059531 0.31226 0.00021745 1.1671 0.00081276 696.3798354079661 80.859 0.37895 80.917 80.733 81.111 0.057587 40 14 4 0 0 0 0.63851 1 44693 44693 9.3831 0 1 6435900 + 37492 22602 24988 25475 44092 44092 0.06588680969275629 LSLKREFLEQE 11 Unmodified _LSLKREFLEQE_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 696.380091 1390.74563 0.63453 0.00044187 0.85418 0.00059483 1.4887 0.0010367 696.8823674805008 81.718 0.14983 81.223 81.163 81.313 -0.4952 0.15314 0.00053514 NaN 9.3831 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 419510 + 37493 22602 24988 25475 0.06588680969275629 LSLLDHEYL 9 Unmodified _LSLLDHEYL_ 0 0 0 nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1;ENST00000522492.1_1_5:148651531-148685943:+|nuORF;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF nc|ENSG00000157510|Q8TED9-2|AFAP1L1 nc|ENSG00000157510|Q8TED9-2|AFAP1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7946166992188 2 551.792589 1101.57063 0.59083 0.00032602 3.3699 0.0018595 3.9607 0.0021855 551.7940188906188 84.872 0.25981 84.371 84.2 84.46 -0.5015 15 10 2 0 0 0 0.30562 1 46444 46444 16.942 3.8998 1 344400 37494 6525 24989 25476 44093 44093 0.02390305894869016 LSLLDLITL 9 Unmodified _LSLLDLITL_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8182373046875 2 500.818076 999.621598 0.62286 0.00031194 0.022681 1.1359E-05 0.64554 0.0003233 500.81801378355686 100.62 0.19802 94.447 94.33 94.528 -6.1757 43 13 4 0 0 0 0.016184 1 67300 67300 67.344 13.768 1 754570000 + 37495 20108 24990 25477 44094 44094 0.12177254939717841 LSLLLCDSRL 10 Unmodified _LSLLLCDSRL_ 0 0 0 REV__ENST00000560793.6_1_1:150937927-150938023:-|nuORF REV__ENST00000560793.6_1_1:150937927-150938023:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2166748046875 3 378.218003 1131.63218 -0.76445 -0.00028913 -1.5829 -0.00059869 -2.3474 -0.00088782 378.216860185996 33.018 0.24065 33.018 32.889 33.13 0 15 11 2 0 0 0 0.56348 1 17301 17301 7.9454 0 1 2317700 + 37496 28830 24991 25478 44095 44095 0.07162914322475444 LSLLSSWNY 9 Unmodified _LSLLSSWNY_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2561645507812 2 541.779482 1081.54441 0.26514 0.00014365 -0.20401 -0.00011053 0.061127 3.3117E-05 541.7798990182605 68.468 0.31218 67.987 67.784 68.096 -0.48071 28 13 3 0 0 0 0.18118 1 37371 37371 12.532 0.89125 1 1942100 37497 16219 24992 25479 44096 44096 0.0069003672338112665 LSLLTSFYFCI 11 Unmodified _LSLLTSFYFCI_ 0 0 0 nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 nc|ENSG00000107147|Q5JUK3-4|KCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.8408813476562 2 653.841225 1305.6679 -0.21145 -0.00013825 0.032268 2.1098E-05 -0.17918 -0.00011715 653.8413170103471 52.343 0.17975 52.343 52.264 52.443 0 11 7 2 0 0 0 0.71341 1 28958 28958 2.9952 0.49676 1 975270 37498 2476 24993 25480 44097 44097 0.027289517794997664 LSLNPPSP 8 Unmodified _LSLNPPSP_ 0 0 0 ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.4506225585938 1 824.451245 823.443968 -0.0050332 -4.1496E-06 1.4562 0.0012006 1.4512 0.0011964 824.4521574223871 85.863 0.21221 85.863 85.701 85.913 0 13 8 2 0 0 0 0.79783 1 47544 47544 7.9102 3.1541 1 364500 37499 14846 24994 25481 44098 44098 0.02518424460379265 LSLNPPSP 8 Unmodified _LSLNPPSP_ 0 0 0 ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.4515991210938 1 824.451245 823.443968 0.045538 3.7544E-05 0.59062 0.00048694 0.63616 0.00052448 824.451769568818 86.322 0.42474 85.819 85.595 86.02 -0.50318 42 17 3 0 0 0 0.18875 2 47250 47154;47250 74.423 14.033 1 2013700 37500 14846 24994 25481 44099;44100 44100 0.02518424460379265 LSLNPPSP 8 Unmodified _LSLNPPSP_ 0 0 0 ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF ENST00000527969.1_1_11:65636240-65636879:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.4511108398438 1 824.451245 823.443968 1.0391 0.00085666 0.13648 0.00011252 1.1755 0.00096918 824.4515783476069 93.72 0.52771 87.544 87.334 87.862 -6.1757 54 30 2 0 0 0 0.21098 1 61964 61964 68.081 7.6912 1 12178000 37501 14846 24994 25481 44101 44101 0.02518424460379265 LSLPGRPALL 10 Unmodified _LSLPGRPALL_ 0 0 0 ENST00000490936.5_1_X:153578959-153579424:-|nuORF ENST00000490936.5_1_X:153578959-153579424:-|nuORF ENST00000490936.5_1_X:153578959-153579424:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8286743164062 2 518.829309 1035.64407 1.2252 0.00063569 0.12176 6.3173E-05 1.347 0.00069886 518.8292179751417 96.993 0.35327 90.817 90.638 90.992 -6.1757 29 20 2 0 0 0 0.10424 1 64346 64346 45.7 7.7256 1 25444000 37502 14271 24995 25482 44102 44102 0.12766899127996112 LSLPHLSW 8 Unmodified _LSLPHLSW_ 0 0 0 nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1 nc|ENSG00000095637|Q9BX66-11|SORBS1 nc|ENSG00000095637|Q9BX66-11|SORBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.7671203613281 2 476.766178 951.517802 -0.22981 -0.00010957 0.14068 6.707E-05 -0.089137 -4.2497E-05 476.76624456960155 51.335 0.33313 51.281 51.107 51.44 -0.053871 41 16 3 0 0 0 0.46494 1 27725 27725 38.151 4.0487 1 14013000 37503 1659 24996 25483 44103 44103 0.04010392622706149 LSLPIVDLLL 10 Unmodified _LSLPIVDLLL_ 0 0 0 REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.9049377441406 3 365.905642 1094.6951 NaN NaN NaN NaN NaN NaN NaN 52.332 1 52.273 51.773 52.773 -0.058918 0 0 0 0.76313 1 28348 28348 8.4443 1.8139 1 + 37504 26986 24997 25484 44104 44104 0.15153803382190745 LSLPKYWDYRY 11 Unmodified _LSLPKYWDYRY_ 0 0 0 nc|ENSG00000241484|P85298|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 752.3824462890625 2 752.385177 1502.7558 NaN NaN NaN NaN NaN NaN NaN 76.473 1 75.994 75.494 76.494 -0.47945 0 0 0 0.85601 1 41861 41861 9.3831 4.0862 1 37505 16570 24998 25485 44105 44105 0.02453288694459843 LSLPSTWDYRT 11 Unmodified _LSLPSTWDYRT_ 0 0 0 ENST00000457965.5_1_19:9730200-9731851:-|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.339599609375 2 669.838059 1337.66157 -0.47243 -0.00031645 0.19437 0.0001302 -0.27806 -0.00018626 669.8382065817829 41.685 0.22906 41.685 41.556 41.785 0 23 11 3 0 0 0 0.5942 1 22512 22512 19.362 9.818 1 6337000 37506 13109 24999 25486 44106 44106 0.006241498723056793 LSLPSTWDYRT 11 Unmodified _LSLPSTWDYRT_ 0 0 0 ENST00000457965.5_1_19:9730200-9731851:-|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.340087890625 2 669.838059 1337.66157 -0.023938 -1.6035E-05 -0.86339 -0.00057833 -0.88733 -0.00059437 669.8374690580333 42.153 0.74255 42.153 41.957 42.7 0 131 37 6 0 0 0 0.46197 3 22726 22726;22838;22952 28.495 14.167 1 2000299999.9999998 37507 13109 24999 25486 44107;44108;44109 44107 0.006241498723056793 LSLPSTWDYRT 11 Unmodified _LSLPSTWDYRT_ 0 0 0 ENST00000457965.5_1_19:9730200-9731851:-|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3385009765625 2 669.838059 1337.66157 0.069739 4.6714E-05 -0.7935 -0.00053152 -0.72376 -0.0004848 669.8374694163316 42.494 0.70251 42.187 42 42.702 -0.30682 117 32 6 0 0 0 0.29354 3 22506 22506;22611;22728 40.239 40.239 1 4600000000 37508 13109 24999 25486 44110;44111;44112 44110 0.006241498723056793 LSLPSTWDYRT 11 Unmodified _LSLPSTWDYRT_ 0 0 0 ENST00000457965.5_1_19:9730200-9731851:-|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.837890625 2 669.838059 1337.66157 0.42919 0.00028749 -0.36821 -0.00024664 0.060974 4.0843E-05 669.8378008078555 42.24 0.3414 42.231 42.08 42.421 -0.0088196 57 15 5 0 0 0 0.51719 1 22679 22679 24.991 15.447 1 196480000 37509 13109 24999 25486 44113 44113 0.006241498723056793 LSLPSTWDYRT 11 Unmodified _LSLPSTWDYRT_ 0 0 0 ENST00000457965.5_1_19:9730200-9731851:-|nuORF;ENST00000421525.5_3_19:9730200-9731858:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF ENST00000457965.5_1_19:9730200-9731851:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 669.838059 1337.66157 0.42919 0.00028749 -0.36821 -0.00024664 0.060974 4.0843E-05 669.8378008078555 42.24 0.3414 42.231 42.08 42.421 -0.0088196 0.040427 0.00044473 NaN 40.239 57 15 5 NaN NaN NaN NaN 0 NaN NaN 0 196480000 37510 13109 24999 25486 0.006241498723056793 LSLQKVWFRRF 11 Unmodified _LSLQKVWFRRF_ 0 0 0 REV__ENST00000264434.6_1_2:70409899-70410019:-|nuORF REV__ENST00000264434.6_1_2:70409899-70410019:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.9571228027344 3 493.957623 1478.85104 0.73469 0.0003629 -0.16358 -8.0799E-05 0.57111 0.00028211 494.2918161380211 90.311 0.28883 84.136 83.968 84.257 -6.1757 38 16 3 0 0 0 0.63851 1 59617 59617 4.7159 1.8726 1 18916000 + 37511 25073 25000 25487 44114 44114 0.13076686676163263 LSLQLRRRAAF 11 Unmodified _LSLQLRRRAAF_ 0 0 0 REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.9103393554688 2 665.906945 1329.79934 1.2531 0.00083444 0.016833 1.121E-05 1.2699 0.00084565 665.9067850627521 105.72 0.3789 99.549 99.416 99.795 -6.1757 88 42 3 0 0 0 0.7326 1 70797 70797 1.1933 0 1 7671400 + 37512 27466 25001 25488 44115 44115 0.14762942982270033 LSLRRSLSY 9 Unmodified _LSLRRSLSY_ 0 0 0 ENSG00000171823|ENST00000339235|FBXL14 ENSG00000171823|ENST00000339235|FBXL14 ENSG00000171823|ENST00000339235|FBXL14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.8514404296875 3 365.548741 1093.62439 1.2646 0.00046229 0.53474 0.00019547 1.7994 0.00065776 365.549151124645 40.556 0.22451 36.027 35.873 36.097 -4.5294 18 13 2 0 0 0 0.20883 1 24149 24149 4.897 0.70751 1 7522300 37513 8146 25002 25489 44116 44116 0.08132523117251367 LSLSTYCLI 9 Unmodified _LSLSTYCLI_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7719116210938 2 506.772811 1011.53107 0.41969 0.00021269 -1.7181 -0.00087067 -1.2984 -0.00065798 506.7715343519418 90.322 0.41917 90.322 90.114 90.533 0 57 25 3 0 0 0 0.12841 1 49962 49962 30.225 7.0764 1 3924800 + 37514 28732 25003 25490 44117 44117 0.025764626197769758 LSLSTYCLI 9 Unmodified _LSLSTYCLI_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.772811 1011.53107 0.076274 3.8654E-05 -2.3962 -0.0012143 -2.3199 -0.0011757 506.7713481408471 90.779 0.4771 90.285 90.051 90.528 -0.49457 -0.01877 -0.00018705 NaN 30.225 84 32 3 NaN NaN NaN NaN 0 NaN NaN 0 16228000 + 37515 28732 25003 25490 0.025764626197769758 LSLTIHAL 8 Unmodified _LSLTIHAL_ 0 0 0 REV__ENST00000334660.9_1_15:41572225-41572549:+|nuORF REV__ENST00000334660.9_1_15:41572225-41572549:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2688293457031 2 434.268553 866.522553 -0.046757 -2.0305E-05 -0.031799 -1.3809E-05 -0.078556 -3.4114E-05 434.2684972580228 76.642 0.52776 76.163 75.909 76.437 -0.47945 100 31 4 0 0 0 0.17881 1 41849 41849 78.445 7.5802 1 47969000 + 37516 25628 25004 25491 44118 44118 0.08395276765452309 LSLWEMTSF 9 Unmodified _LSLWEMTSF_ 0 0 0 REV__ENST00000541207.1_1_12:12674099-12674270:-|nuORF REV__ENST00000541207.1_1_12:12674099-12674270:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2693481445312 2 557.267893 1112.52123 0.38914 0.00021686 0.70897 0.00039508 1.0981 0.00061194 557.2677792656392 76.34 0.19911 75.861 75.71 75.909 -0.47945 11 7 2 0 0 0 0.49272 1 41793 41793 7.9102 0 1 431570 + 37517 28594 25005 25492 44119 44119 -0.03052725385600752 LSLWSIAESPF 11 Unmodified _LSLWSIAESPF_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5711975097656 3 417.22029 1248.63904 0.14792 6.1715E-05 1.3671 0.0005704 1.5151 0.00063211 417.2208705779331 27.664 0.19527 27.692 27.554 27.749 0.028664 11 8 2 0 0 0 0.30217 1 14347 14347 2.4348 0 1 2584300 37518 6943 25006 25493 44120 44120 0.02466550474696305 LSMAAARGGP 10 Unmodified _LSMAAARGGP_ 0 0 0 REV__ENST00000575942.1_1_16:4395983-4401262:-|nuORF REV__ENST00000575942.1_1_16:4395983-4401262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.4841918945312 1 930.482562 929.475285 3.4526 0.0032126 -1.0494 -0.00097647 2.4032 0.0022361 930.4815247516144 97.636 0.29919 97.617 97.492 97.791 -0.018188 25 10 3 0 0 0 0.6966 1 54257 54257 3.2813 0.39209 1 19924000 + 37519 29020 25007 25494 44121 44121 0.007726742228214789 LSMAAARGGP 10 Unmodified _LSMAAARGGP_ 0 0 0 REV__ENST00000575942.1_1_16:4395983-4401262:-|nuORF REV__ENST00000575942.1_1_16:4395983-4401262:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 930.482562 929.475285 3.4526 0.0032126 -1.0494 -0.00097647 2.4032 0.0022361 930.4815247516144 97.636 0.29919 97.617 97.492 97.791 -0.018188 0.15687 -0.001504 NaN 3.2813 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 19924000 + 37520 29020 25007 25494 0.007726742228214789 LSMFIKLM 8 Unmodified _LSMFIKLM_ 0 0 0 REV__ENSG00000174804|ENST00000531380|FZD4 REV__ENSG00000174804|ENST00000531380|FZD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7788391113281 2 491.776842 981.539131 NaN NaN NaN NaN NaN NaN NaN 70.599 1 70.599 70.099 71.099 0 0 0 0 0.97444 1 39333 39333 2.5775 0 1 + 37521 22819 25008 25495 44122 44122 0.047623183355653964 LSMFSKMNL 9 Unmodified _LSMFSKMNL_ 0 0 0 nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI nc|ENSG00000140525|Q9NVI1-2|FANCI MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2748413085938 2 535.772288 1069.53002 0.92441 0.00049527 -1.5237 -0.00081633 -0.59925 -0.00032106 535.7711993835303 51.061 0.43802 45.412 45.134 45.572 -5.649 57 26 3 0 0 0 0.28023 1 31917 31917 18.146 0.011366 1 72057000 37522 5247 25009 25496 44123 44123 -0.0019607502076723904 LSMHKQVV 8 Unmodified _LSMHKQVV_ 0 0 0 REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7493286132812 2 471.265487 940.516422 0.74924 0.00035309 -2.845 -0.0013407 -2.0957 -0.00098764 471.26399957883837 47.164 0.23377 42.084 41.977 42.211 -5.0805 22 17 2 0 0 0 0.71527 1 29178 29178 15.847 2.3393 1 12232000 + 37523 26065 25010 25497 44124 44124 0.04378435262299263 LSMRKFRVPYQ 11 Unmodified _LSMRKFRVPYQ_ 0 0 0 ENST00000228928.11_1_12:113407805-113407892:+|nuORF ENST00000228928.11_1_12:113407805-113407892:+|nuORF ENST00000228928.11_1_12:113407805-113407892:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.599853515625 3 475.599218 1423.77582 0.31672 0.00015063 1.8428 0.00087644 2.1595 0.0010271 475.6000143281723 48.388 0.19406 48.344 48.261 48.455 -0.04369 16 9 2 0 0 0 0.73114 1 26134 26134 1.3296 0.11481 1 3094400 37524 11057 25011 25498 44125 44125 0.08088761153453561 LSMVSECLF 9 Unmodified _LSMVSECLF_ 0 0 0 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.7763671875 2 514.743196 1027.47184 1.0134 0.00052164 2.0146 0.001037 3.028 0.0015586 514.7439067761984 101.24 0.073204 95.06 95.018 95.091 -6.1757 8 4 2 0 0 0 0.18118 1 67874 67874 18.135 0 1 16836000 37525 1566 25012 25499 44126 44126 -0.040797566660558005 LSMYYTCM 8 Unmodified _LSMYYTCM_ 0 0 0 ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF ENST00000483549.5_1_22:46114317-46136469:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1012.405212402344 1 1011.39842 1010.39115 1.0286 0.0010403 4.0699 0.0041163 5.0985 0.0051566 1012.4046750880611 63.822 0.30994 57.646 57.427 57.737 -6.1757 20 16 2 0 0 0 0.78849 1 41328 41328 9.3474 3.587 1 9485300 37526 14132 25013 25500 44127 44127 -0.11363360980601556 LSNDDLLTV 9 Unmodified _LSNDDLLTV_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2601928710938 2 495.261122 988.507691 0.4456 0.00022069 0.28522 0.00014126 0.73081 0.00036194 495.2614001702432 72.966 0.53828 72.966 72.611 73.149 0 65 25 4 0 0 0 0.41742 1 40527 40527 11.64 0 1 7573600 + 37527 17536 25014 25501 44128 44128 0.012977401068155814 LSNGFIVL 8 Unmodified _LSNGFIVL_ 0 0 0 ENSG00000212128|ENST00000390677|TAS2R13 ENSG00000212128|ENST00000390677|TAS2R13 ENSG00000212128|ENST00000390677|TAS2R13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.7555236816406 2 431.755278 861.496004 0.19875 8.5811E-05 0.20081 8.6703E-05 0.39956 0.00017251 431.75543223797536 51.829 0.20679 51.396 51.325 51.531 -0.43367 16 10 2 0 0 0 0.62219 1 27996 27996 24.021 3.5669 1 1997900 37528 10413 25015 25502 44129 44129 0.059715878741258166 LSNIDSEVLQ 10 Unmodified _LSNIDSEVLQ_ 0 0 0 REV__ENSG00000131738|ENST00000251646|KRT33B REV__ENSG00000131738|ENST00000251646|KRT33B MSMS AL20221201_MKP_PDAC_01 4 559.2913208007812 2 559.290411 1116.56627 NaN NaN NaN NaN NaN NaN NaN 95.564 1 89.388 88.888 89.888 -6.1757 0 0 0 0.71157 1 63301 63301 16.149 0 1 + + 37529 16858 25016 25503 44130 44130 0.012647966812892264 LSNPPTPP 8 Unmodified _LSNPPTPP_ 0 0 0 ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant ENSG00000167548|ENST00000301067|KMT2D;KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7215270996094 2 411.721436 821.428318 0.52826 0.00021749 -0.81181 -0.00033424 -0.28356 -0.00011675 411.7211718506199 54.123 0.34789 54.123 53.923 54.271 0 36 15 3 0 0 0 0.40035 1 29980 29980 44.407 10.305 1 8650500 37530 778;7628 25017 25504 44131 44131 0.010461379433309048 LSNSTVYFLNL 11 Unmodified _LSNSTVYFLNL_ 0 0 0 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8385009765625 2 635.837528 1269.6605 0.081735 5.197E-05 1.2601 0.00080122 1.3418 0.00085319 635.8382327771732 85.739 0.4052 85.739 85.508 85.913 0 51 16 4 0 0 0 0.44612 2 47518 47427;47518 29.841 14.592 1 3522800 37531 1317 25018 25505 44132;44133 44133 0.036459355034367036 LSNSTVYFLNL 11 Unmodified _LSNSTVYFLNL_ 0 0 0 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8392333984375 2 635.837528 1269.6605 0.19787 0.00012581 1.8587 0.0011818 2.0566 0.0013077 635.838674769348 99.045 0.098793 92.869 92.824 92.923 -6.1757 7 5 2 0 0 0 0.2736 1 65873 65873 41.956 22.594 1 22634000 37532 1317 25018 25505 44134 44134 0.036459355034367036 LSNSTVYFLNL 11 Unmodified _LSNSTVYFLNL_ 0 0 0 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 ENSG00000081087|ENST00000193322|OSTM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 635.837528 1269.6605 0.18076 0.00011493 1.3669 0.00086913 1.5477 0.00098406 635.8384019595983 86.173 0.1553 85.67 85.544 85.699 -0.50318 -0.034703 0.00012186 NaN 29.841 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 318180 37533 1317 25018 25505 0.036459355034367036 LSNVFSQIH 9 Unmodified _LSNVFSQIH_ 0 0 0 nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2742919921875 2 522.777274 1043.53999 0.33284 0.000174 2.3198 0.0012127 2.6526 0.0013867 522.7781982047494 78.668 0.36716 78.72 78.49 78.857 0.052452 42 14 4 0 0 0 0.16226 1 43393 43393 26.884 6.43 1 7917500 37534 599 25019 25506 44135 44135 0.019965723004588654 LSPAEEWHAQM 11 Unmodified _LSPAEEWHAQM_ 0 0 0 REV__ENST00000568198.1_1_16:1393433-1394289:+|nuORF;REV__nc|ENSG00000007516|O94812-5|BAIAP3 REV__nc|ENSG00000007516|O94812-5|BAIAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.7977294921875 2 649.795337 1297.57612 NaN NaN NaN NaN NaN NaN NaN 47.662 1 47.624 47.124 48.124 -0.038643 0 0 0 0.75116 1 25687 25687 14.405 1.3629 1 + 37535 28939;17012 25020 25507 44136 44136 -0.06076338584989571 LSPAITVGHL 10 Unmodified _LSPAITVGHL_ 0 0 0 REV__ENST00000345732.8_1_11:60235980-60236097:+|nuORF REV__ENST00000345732.8_1_11:60235980-60236097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.3080139160156 2 504.297842 1006.58113 NaN NaN NaN NaN NaN NaN NaN 65.97 1 59.794 59.294 60.294 -6.1757 0 0 0 0.31648 1 42874 42874 36.127 5.4905 1 + 37536 25756 25021 25508 44137 44137 0.07810333339955378 LSPALLGEY 9 Unmodified _LSPALLGEY_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7633666992188 2 481.7633 961.512048 0.16942 8.1618E-05 0.2036 9.8088E-05 0.37302 0.00017971 481.76359493963366 61.832 0.31097 61.832 61.707 62.018 0 20 13 2 0 0 0 0.41742 1 34534 34534 11.64 3.047 1 977340 + 37537 16982 25022 25509 44138 44138 0.029752493203773156 LSPALLGEY 9 Unmodified _LSPALLGEY_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 481.7633 961.512048 0.16942 8.1618E-05 0.2036 9.8088E-05 0.37302 0.00017971 481.76359493963366 61.832 0.31097 61.832 61.707 62.018 0 0 0 NaN 11.64 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 977340 + 37538 16982 25022 25509 0.029752493203773156 LSPAQRTLY 9 Unmodified _LSPAQRTLY_ 0 0 0 ENST00000402618.6_1_20:18269192-18290832:+|nuORF;nc|ENSG00000125846|P52736-2|ZNF133;ENSG00000125846|ENST00000425686|ZNF133;nc|ENSG00000125846|P52736-5|ZNF133;ENSG00000167377|ENST00000647773|ZNF23 ENST00000402618.6_1_20:18269192-18290832:+|nuORF ENST00000402618.6_1_20:18269192-18290832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.78759765625 2 524.792924 1047.57129 0.36542 0.00019177 -0.53679 -0.0002817 -0.17137 -8.9936E-05 524.7926422495274 45.517 0.47402 45.517 45.345 45.819 0 80 25 5 0 0 0 0.31356 1 24943 24943 22.736 0.98964 1 270500000 37539 3896 25023 25510 44139 44139 0.04941145334578323 LSPDPKAQY 9 Unmodified _LSPDPKAQY_ 0 0 0 ENST00000517923.1_1_8:23399285-23423875:+|nuORF;nc|ENSG00000147454|Q9NYZ2-2|SLC25A37;ENSG00000147454|ENST00000519973|SLC25A37 ENST00000517923.1_1_8:23399285-23423875:+|nuORF ENST00000517923.1_1_8:23399285-23423875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7640380859375 2 509.763832 1017.51311 0.19284 9.8305E-05 0.52066 0.00026541 0.7135 0.00036372 509.7641059435781 35.743 0.22089 35.743 35.615 35.836 0 16 10 2 0 0 0 0.39863 1 18946 18946 12.532 2.3482 1 2023600 37540 5853 25024 25511 44140 44140 0.0050546368928507945 LSPDRMFSL 9 Unmodified _LSPDRMFSL_ 0 0 0 REV__nc|ENSG00000043143|Q9NQC1-2|JADE2 REV__nc|ENSG00000043143|Q9NQC1-2|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.27490234375 2 533.273509 1064.53247 0.64306 0.00034293 2.6051 0.0013892 3.2481 0.0017321 533.2736563460597 73.107 0.36845 73.107 72.966 73.335 0 29 16 3 0 0 0 0.30562 1 40695 40695 16.942 2.104 1 1405000 + 37541 17211 25025 25512 44141 44141 0.0027809670855276636 LSPDYSLLL 9 Unmodified _LSPDYSLLL_ 0 0 0 ENST00000561415.1_1_14:24633725-24635402:+|nuORF;ENST00000560542.1_1_14:24633743-24634393:+|nuORF ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENST00000561415.1_1_14:24633725-24635402:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7857360839844 2 510.784233 1019.55391 0.016992 8.679E-06 0.87169 0.00044524 0.88868 0.00045392 510.7845513519968 78.833 0.5743 78.347 78.111 78.686 -0.48596 75 23 4 0 0 0 0.39863 1 43316 43316 12.532 0 1 11686000 37542 15322 25026 25513 44142 44142 0.04491805008922256 LSPEAAYPSPA 11 Unmodified _LSPEAAYPSPA_ 0 0 0 REV__nc|ENSG00000100490|Q00532-2|CDKL1 REV__nc|ENSG00000100490|Q00532-2|CDKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7756958007812 2 551.774396 1101.53424 0.0088976 4.9095E-06 0.9597 0.00052954 0.9686 0.00053445 552.2755535933167 41.721 0.13682 41.721 41.668 41.804 0 11 6 2 0 0 0 0.48615 1 22563 22563 17.113 0 1 3487400 + 37543 29535 25027 25514 44143 44143 -0.012465710018432219 LSPEAAYPSPA 11 Unmodified _LSPEAAYPSPA_ 0 0 0 REV__nc|ENSG00000100490|Q00532-2|CDKL1 REV__nc|ENSG00000100490|Q00532-2|CDKL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 551.774396 1101.53424 0.0088976 4.9095E-06 0.9597 0.00052954 0.9686 0.00053445 552.2755535933167 41.721 0.13682 41.721 41.668 41.804 0 0 0 NaN 17.113 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3487400 + 37544 29535 25027 25514 -0.012465710018432219 LSPEFNERFEW 11 Unmodified _LSPEFNERFEW_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2296447753906 3 485.229736 1452.66738 0.77294 0.00037506 0.13797 6.6949E-05 0.91092 0.000442 485.22985408106723 72.709 0.52351 72.233 72.083 72.606 -0.47588 47 23 3 0 0 0 0.73349 1 39926 39926 1.1098 0.65524 1 972930 37545 5174 25028 25515 44144 44144 -0.04084751616005633 LSPEFNERFEW 11 Unmodified _LSPEFNERFEW_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 485.229736 1452.66738 0.35119 0.00017041 -0.12919 -6.2685E-05 0.22201 0.00010773 485.56386080543314 72.225 0.16776 72.264 72.208 72.376 0.039024 0.015665 -0.0002674 NaN 1.1098 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3039900 37546 5174 25028 25515 -0.04084751616005633 LSPFAGRA 8 Unmodified _LSPFAGRA_ 0 0 0 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 ENSG00000188613|ENST00000425699|NANOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 818.451416015625 1 818.451914 817.444637 1.1573 0.00094717 -0.34424 -0.00028175 0.81302 0.00066542 818.4518593989193 51.226 0.42413 45.577 45.38 45.804 -5.649 39 25 2 0 0 0 0.57045 1 32259 32259 28.487 2.1456 1 40833000 37547 9676 25029 25516 44145 44145 0.028612639000812123 LSPFDPTLY 9 Unmodified _LSPFDPTLY_ 0 0 0 REV__ENSG00000164303|ENST00000296741|ENPP6 REV__ENSG00000164303|ENST00000296741|ENPP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.76904296875 2 526.768583 1051.52261 0.33061 0.00017415 0.090116 4.747E-05 0.42073 0.00022163 526.7685393475962 92.292 0.46558 91.811 91.525 91.991 -0.48092 37 21 2 0 0 0 0.58865 1 50330 50330 2.0598 0 1 512230 + 37548 21901 25030 25517 44146 44146 -0.0010876802518851036 LSPFHHGLVQ 10 Unmodified _LSPFHHGLVQ_ 0 0 0 ENST00000457354.6_1_14:51713877-51716045:+|nuORF ENST00000457354.6_1_14:51713877-51716045:+|nuORF ENST00000457354.6_1_14:51713877-51716045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2087707519531 3 378.873336 1133.59818 -0.19315 -7.318E-05 2.681 0.0010157 2.4878 0.00094256 379.20899898169745 41.523 0.29922 41.522 41.381 41.68 -0.0017929 21 13 2 0 0 0 0.6966 1 22170 22170 1.5923 0 1 7947000 37549 13609 25031 25518 44147 44147 0.03672253945751436 LSPFHWSVYM 10 Unmodified _LSPFHWSVYM_ 0 0 0 REV__ENST00000223210.4_1_7:149564090-149564210:+|nuORF REV__ENST00000223210.4_1_7:149564090-149564210:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.803466796875 2 633.802434 1265.59032 0.49873 0.0003161 1.5045 0.00095354 2.0032 0.0012696 633.8035302139616 52.158 0.34974 52.1 51.939 52.289 -0.058918 43 16 4 0 0 0 0.52888 1 28232 28232 14.838 3.3436 1 6319600 + 37550 24771 25032 25519 44148 44148 -0.031856413660307226 LSPFPTRA 8 Unmodified _LSPFPTRA_ 0 0 0 REV__ENST00000607166.1_1_10:31607359-31607734:-|nuORF REV__ENST00000607166.1_1_10:31607359-31607734:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.7513732910156 2 444.750527 887.486502 0.31709 0.00014103 1.0163 0.00045201 1.3334 0.00059304 444.75056307457675 93.369 0.63794 87.194 86.726 87.364 -6.1757 61 45 2 0 0 0 0.60622 1 61538 61538 25.399 2.663 1 25420000 + 37551 29308 25033 25520 44149 44149 0.03825819588610102 LSPGFYEI 8 Unmodified _LSPGFYEI_ 0 0 0 ENSG00000175065|ENST00000308128|DSG4;nc|ENSG00000175065|Q86SJ6-2|DSG4 ENSG00000175065|ENST00000308128|DSG4 ENSG00000175065|ENST00000308128|DSG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.467041015625 1 925.466561 924.459284 0.46281 0.00042832 -0.61333 -0.00056762 -0.15051 -0.0001393 925.4661097548193 100.63 0.12896 94.457 94.374 94.503 -6.1757 15 8 2 0 0 0 0.17035 1 67311 67311 81.864 11.149 1 45653000 37552 8481 25034 25521 44150 44150 -0.005967087424210149 LSPGPLPPYP 10 Unmodified _LSPGPLPPYP_ 0 0 0 REV__ENST00000433234.2_11:204190-204341:-|nuORF REV__ENST00000433234.2_11:204190-204341:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2864379882812 2 519.286943 1036.55933 0.43072 0.00022367 0.014874 7.7236E-06 0.44559 0.00023139 519.2872097952701 49.188 0.50901 49.145 48.867 49.376 -0.04369 49 24 3 0 0 0 0.35903 1 26574 26574 24.021 2.2739 1 3488200 + 37553 26996 25035 25522 44151 44151 0.042515285913850676 LSPGRRCNTF 10 Unmodified _LSPGRRCNTF_ 0 0 0 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 ENSG00000257315|ENST00000550078|ZBED6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7686157226562 2 575.792932 1149.57131 NaN NaN NaN NaN NaN NaN NaN 67.049 1 67.049 66.549 67.549 0 0 0 0 0.83398 1 37393 37393 10.824 0 1 37554 10810 25036 25523 44152 44152 0.00250822062912448 LSPGSVLLP 9 Unmodified _LSPGSVLLP_ 0 0 0 REV__ENST00000378643.7_2_9:35079462-35079726:-|nuORF REV__ENST00000378643.7_2_9:35079462-35079726:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7693786621094 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 62.665 1 62.665 62.165 63.165 0 0 0 0 0.84564 1 34956 34956 2.0598 0 1 + 37555 26271 25037 25524 44153 44153 0.07671857045625075 LSPHAFLG 8 Unmodified _LSPHAFLG_ 0 0 0 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2298583984375 2 421.231971 840.449388 NaN NaN NaN NaN NaN NaN NaN 18.962 1 18.962 18.462 19.462 0 0 0 0 0.95201 1 9459 9459 10.183 1.5901 1 + 37556 19492 25038 25525 44154 44154 0.02278148042853445 LSPHVGVP 8 Unmodified _LSPHVGVP_ 0 0 0 REV__ENSG00000170379|ENST00000684770|TCAF2 REV__ENSG00000170379|ENST00000684770|TCAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.4583740234375 1 805.456665 804.449388 -0.27608 -0.00022237 0.56205 0.00045271 0.28598 0.00023034 805.4573428599232 42.701 0.25306 42.394 42.296 42.549 -0.30682 16 10 2 0 0 0 0.13235 1 22709 22709 90.836 7.8963 1 6697300 + 37557 22475 25039 25526 44155 44155 0.039341480428561226 LSPHVGVP 8 Unmodified _LSPHVGVP_ 0 0 0 REV__ENSG00000170379|ENST00000684770|TCAF2 REV__ENSG00000170379|ENST00000684770|TCAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 805.4583129882812 1 805.456665 804.449388 1.8014 0.0014509 -0.25857 -0.00020827 1.5428 0.0012427 805.456348069601 47.469 0.50745 42.235 42.043 42.55 -5.2339 64 29 3 0 0 0 0.17881 1 29392 29392 78.445 7.5802 1 33301000 + 37558 22475 25039 25526 44156 44156 0.039341480428561226 LSPHVGVP 8 Unmodified _LSPHVGVP_ 0 0 0 REV__ENSG00000170379|ENST00000684770|TCAF2 REV__ENSG00000170379|ENST00000684770|TCAF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 805.456665 804.449388 0.44356 0.00035727 0.52795 0.00042524 0.97151 0.00078251 805.4572472784023 42.478 0.26609 42.478 42.339 42.605 0 0.10859 0.000394 NaN 90.836 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4683400 + 37559 22475 25039 25526 0.039341480428561226 LSPIRFISTI 10 Unmodified _LSPIRFISTI_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5450439453125 3 382.900891 1145.68084 0.65261 0.00024988 0.22131 8.4741E-05 0.87392 0.00033462 382.9008271930156 50.757 0.1793 50.343 50.258 50.438 -0.41351 11 8 2 0 0 0 0.2384 1 27328 27328 5.4027 1.4583 1 1270900 + 37560 17004 25040 25527 44157 44157 0.11383150953906807 LSPKRPWK 8 Unmodified _LSPKRPWK_ 0 0 0 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.308837890625 2 506.308544 1010.60253 0.43388 0.00021968 0.58727 0.00029734 1.0211 0.00051702 506.3093152974092 88.199 0.29094 88.199 88.053 88.344 0 22 13 2 0 0 0 0.80975 1 48880 48880 0.79363 0.10326 1 930000 37561 6835 25041 25528 44158 44158 0.0976576315931652 LSPLEARVT 9 Unmodified _LSPLEARVT_ 0 0 0 ENSG00000174600|ENST00000550402|CMKLR1;nc|ENSG00000174600|Q99788-2|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2480773925781 2 493.287474 984.560395 -0.56175 -0.0002771 -0.561 -0.00027674 -1.1228 -0.00055384 493.2870914942808 34.236 0.19055 34.236 34.175 34.365 0 13 9 2 0 0 0 0.1325 1 18014 18014 32.305 3.8186 1 1850700 37562 8439 25042 25529 44159 44159 0.06749742960278127 LSPLLLIPLRP 11 Unmodified _LSPLLLIPLRP_ 0 0 0 REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2752075195312 3 411.27607 1230.80638 NaN NaN NaN NaN NaN NaN NaN 104.41 1 98.229 97.729 98.729 -6.1757 0 0 0 0.94287 1 69923 69923 0.45452 0.1855 1 + 37563 27853 25043 25530 44160 44160 0.20020862810133622 LSPLPPVV 8 Unmodified _LSPLPPVV_ 0 0 0 REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF REV__ENST00000547077.1_1_10:102989368-102992212:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2594909667969 2 411.260197 820.50584 -0.41602 -0.00017109 -2.485 -0.001022 -2.901 -0.0011931 411.2591737498375 36.413 0.12499 36.434 36.349 36.474 0.021545 9 5 2 0 0 0 0.80311 1 19306 19306 4.756 0 1 867780 + 37564 28667 25044 25531 44161 44161 0.0884077587951424 LSPLSDETII 10 Unmodified _LSPLSDETII_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3081665039062 2 544.297704 1086.58086 NaN NaN NaN NaN NaN NaN NaN 40.551 1 40.551 40.051 41.051 0 0 0 0 0.38297 1 21803 21803 32.305 3.8186 1 + 37565 19912 25045 25532 44162 44162 0.041028688294545645 LSPLVLEVDP 10 Unmodified _LSPLVLEVDP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.8123168945312 2 541.310615 1080.60668 0.094063 5.0917E-05 0.84629 0.00045811 0.94036 0.00050902 541.311100236327 48.822 0.22783 48.451 48.369 48.597 -0.37172 24 11 3 0 0 0 0.65023 1 26204 26204 13.906 0.86358 1 5223000 + 37566 165;150 25046 25533 44163 44163 0.06959763071699854 LSPMAHCVTL 10 Unmodified _LSPMAHCVTL_ 0 0 0 ENST00000483359.5_1_20:34220178-34252711:-|nuORF ENST00000483359.5_1_20:34220178-34252711:-|nuORF ENST00000483359.5_1_20:34220178-34252711:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2694702148438 2 536.269912 1070.52527 0.29928 0.00016049 -0.01941 -1.0409E-05 0.27987 0.00015009 536.2696988008014 96.061 0.45419 95.756 95.574 96.028 -0.30473 36 24 2 0 0 0 0.69377 1 52476 52476 3.5965 0 1 542380 37567 14129 25047 25534 44164 44164 -0.0071695916353746725 LSPNLSPD 8 Unmodified _LSPNLSPD_ 0 0 0 ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1 ENSG00000152767|ENST00000319562|FARP1 ENSG00000152767|ENST00000319562|FARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 842.4268188476562 1 842.425424 841.418148 0.58161 0.00048996 -0.027895 -2.3499E-05 0.55371 0.00046646 842.4254304750266 66.958 0.44554 60.782 60.558 61.003 -6.1757 42 24 2 0 0 0 0.18875 1 43624 43624 74.423 0 1 17839000 37568 6213 25048 25535 44165 44165 -0.008904697819048124 LSPPRGRA 8 Unmodified _LSPPRGRA_ 0 0 0 ENSG00000130590|ENST00000369886|SAMD10 ENSG00000130590|ENST00000369886|SAMD10 ENSG00000130590|ENST00000369886|SAMD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2539672851562 2 427.253769 852.492984 0.34125 0.0001458 0.14358 6.1344E-05 0.48483 0.00020714 427.2538211986222 16.53 0.2699 13.973 13.83 14.1 -2.557 97 39 3 0 0 0 0.75262 1 8605 8605 12.532 0 1 15372000 37569 4228 25049 25536 44166 44166 0.0608375753998871 LSPQGTRCI 9 Unmodified _LSPQGTRCI_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7566528320312 2 487.758027 973.5015 NaN NaN NaN NaN NaN NaN NaN 36.961 1 36.961 36.461 37.461 0 0 0 0 0.18753 1 19633 19633 32.305 1.6689 1 37570 1543 25050 25537 44167 44167 0.013689433942886353 LSPREPFY 8 Unmodified _LSPREPFY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2972106933594 2 504.761092 1007.50763 -0.27662 -0.00013963 -0.0042842 -2.1625E-06 -0.28091 -0.00014179 504.761208988278 60.054 0.22324 59.563 59.429 59.652 -0.49079 15 10 2 0 0 0 8.7369 1 32641 32641 8.5933 0 1 2589900 37571 1983 25051 25538 44168 44168 0.004177848974677545 LSPRLGWGP 9 Unmodified _LSPRLGWGP_ 0 0 0 nc|ENSG00000292373|Q01113-3|IL9R nc|ENSG00000292373|Q01113-3|IL9R nc|ENSG00000292373|Q01113-3|IL9R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7782287597656 2 491.777077 981.5396 0.56705 0.00027886 1.3284 0.00065327 1.8954 0.00093214 491.77768095602937 67.653 0.27319 67.671 67.514 67.787 0.018036 32 13 3 0 0 0 0.46501 1 37137 37137 9.3831 2.0939 1 8303600 37572 16648 25052 25539 44169 44169 0.04809197371275786 LSPRLQYPP 9 Unmodified _LSPRLQYPP_ 0 0 0 REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5393371582031 3 357.537953 1069.59203 0.39976 0.00014293 1.6283 0.00058216 2.028 0.00072509 357.87277311176894 43.243 0.44058 43.227 42.936 43.377 -0.015667 44 20 3 0 0 0 0.59218 1 23233 23233 2.4985 1.6341 1 10413000 + 37573 22619 25053 25540 44170 44170 0.060017357141987304 LSPRTQSTLT 10 Unmodified _LSPRTQSTLT_ 0 0 0 REV__ENST00000223084.7_1_7:32529691-32529772:-|nuORF REV__ENST00000223084.7_1_7:32529691-32529772:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3042602539062 2 552.306395 1102.59824 -0.07087 -3.9142E-05 2.5008 0.0013812 2.4299 0.0013421 552.3087062676047 37.25 0.5677 36.979 36.686 37.254 -0.27133 114 23 6 0 0 0 0.29752 1 19471 19471 27.629 10.516 1 187420000 + 37574 24769 25054 25541 44171 44171 0.05104209155092576 LSPRTQSTLT 10 Unmodified _LSPRTQSTLT_ 0 0 0 REV__ENST00000223084.7_1_7:32529691-32529772:-|nuORF REV__ENST00000223084.7_1_7:32529691-32529772:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.303955078125 2 552.306395 1102.59824 -0.16937 -9.3543E-05 2.8754 0.0015881 2.706 0.0014946 552.3089935653625 36.925 0.48894 36.946 36.706 37.195 0.021545 90 22 5 0 0 0 0.29752 1 19499 19499 27.629 3.6082 1 34364000 + 37575 24769 25054 25541 44172 44172 0.05104209155092576 LSPRTVLVL 9 Unmodified _LSPRTVLVL_ 0 0 0 CON__A2I7N1 CON__A2I7N1 CON__A2I7N1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3238525390625 2 499.32386 996.633166 0.34054 0.00017004 -0.57222 -0.00028572 -0.23168 -0.00011568 499.3235037917154 62.251 0.30399 62.218 62.044 62.348 -0.032787 35 15 3 0 0 0 0.047788 1 33963 33963 45.7 0 1 31915000 + 37576 137 25055 25542 44173 44173 0.1347149675369792 LSPRWVSI 8 Unmodified _LSPRWVSI_ 0 0 0 ENST00000439741.3_2_1:149908572-149908737:-|nuORF ENST00000439741.3_2_1:149908572-149908737:-|nuORF ENST00000439741.3_2_1:149908572-149908737:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.2773132324219 2 479.279452 956.544351 NaN NaN NaN NaN NaN NaN NaN 25.617 1 22.734 22.234 23.234 -2.8831 0 0 0 0.48284 1 14038 14038 41.84 7.7372 1 37577 13380 25056 25543 44174 44174 0.0643408151404401 LSPSLLLLILP 11 Unmodified _LSPSLLLLILP_ 0 0 0 ENSG00000204345|ENST00000375352|CD300LD ENSG00000204345|ENST00000375352|CD300LD ENSG00000204345|ENST00000375352|CD300LD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1178.482055664062 1 1178.77587 1177.7686 0.6199 0.00073072 0.95389 0.0011244 1.5738 0.0018551 1179.776977477896 77.973 0.14629 78.025 77.939 78.086 0.052444 8 5 2 0 0 0 0.29817 1 43000 43000 8.1555 2.4237 1 1362600 37578 10271 25057 25544 44175 44175 0.18682351824691068 LSPSSINAL 9 Unmodified _LSPSSINAL_ 0 0 0 REV__nc|ENSG00000135636|O75923-15|DYSF REV__nc|ENSG00000135636|O75923-15|DYSF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2539672851562 2 451.2531 900.491647 -0.15968 -7.2056E-05 3.2642 0.001473 3.1046 0.0014009 451.2548315852865 55.967 0.28547 55.967 55.853 56.138 0 24 15 2 0 0 0 0.052168 1 31093 31093 44.407 2.3125 1 4926300 + 37579 20084 25058 25545 44176 44176 0.03742078660570769 LSPSSYPGY 9 Unmodified _LSPSSYPGY_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7308044433594 2 485.729458 969.444362 0.63709 0.00030946 0.63797 0.00030988 1.2751 0.00061934 485.7297387072866 38.781 0.3756 38.781 38.577 38.953 0 30 16 2 0 0 0 0.28047 1 20693 20693 18.135 1.0484 1 6119900 + 37580 23672 25059 25546 44177 44177 -0.04158200610424956 LSPSSYPGY 9 Unmodified _LSPSSYPGY_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.729458 969.444362 0.63709 0.00030946 0.63797 0.00030988 1.2751 0.00061934 485.7297387072866 38.781 0.3756 38.781 38.577 38.953 0 0 0 NaN 18.135 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6119900 + 37581 23672 25059 25546 -0.04158200610424956 LSPYSDYEF 9 Unmodified _LSPYSDYEF_ 0 0 0 nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD nc|ENSG00000153707|P23468-2|PTPRD nc|ENSG00000153707|P23468-2|PTPRD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7415771484375 2 560.745305 1119.47606 0.96507 0.00054116 -2.5974 -0.0014565 -1.6323 -0.0009153 560.740377496943 54.264 0.50196 54.264 54.051 54.553 0 79 22 5 0 0 0 0.2143 1 30046 30046 21.747 8.7042 1 24642000 37582 6271 25060 25547 44178 44178 -0.07890252647143825 LSPYSQDIY 9 Unmodified _LSPYSQDIY_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000514212.5_1_5:148617016-148622118:+|nuORF;ENST00000519549.1_1_5:148617016-148620071:+|nuORF ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2611694335938 2 543.261122 1084.50769 0.40922 0.00022231 -0.54249 -0.00029471 -0.13327 -7.2402E-05 543.2608129770318 66.639 0.70058 66.639 66.195 66.896 0 58 31 2 0 0 0 0.16226 1 37186 37186 26.884 8.7373 1 5503700 37583 8298 25061 25548 44179 44179 -0.031182598931764005 LSQADDPDDG 10 Unmodified _LSQADDPDDG_ 0 0 0 ENSG00000169682|ENST00000311008|SPNS1;nc|ENSG00000169682|Q9H2V7-5|SPNS1;ENST00000568900.5_1_16:28986322-28990816:+|nuORF;nc|ENSG00000169682|Q9H2V7-3|SPNS1;nc|ENSG00000169682|Q9H2V7-2|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 ENSG00000169682|ENST00000311008|SPNS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7103271484375 2 516.709451 1031.40435 -0.097833 -5.0551E-05 1.442 0.00074508 1.3441 0.00069453 516.7104806318285 23.26 0.45272 23.26 22.974 23.427 0 70 22 4 0 0 0 0.48505 2 11827 11735;11827 17.113 0.78985 1 2660700 37584 7899 25062 25549 44180;44181 44181 -0.11009792071672564 LSQAQQVF 8 Unmodified _LSQAQQVF_ 0 0 0 REV__ENSG00000164244|ENST00000296666|PRRC1 REV__ENSG00000164244|ENST00000296666|PRRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7462768554688 2 460.745442 919.476331 0.95064 0.000438 -0.12978 -5.9794E-05 0.82087 0.00037821 460.74522982213665 38.179 0.43322 33.81 33.531 33.964 -4.3689 39 25 2 0 0 0 0.57045 1 22371 22371 28.487 28.487 1 21134000 + 37585 21894 25063 25550 44182 44182 0.013372118633810715 LSQARMINIT 10 Unmodified _LSQARMINIT_ 0 0 0 ENST00000382758.5_1_13:21331607-21331646:-|nuORF ENST00000382758.5_1_13:21331607-21331646:-|nuORF ENST00000382758.5_1_13:21331607-21331646:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8807067871094 3 382.881502 1145.62268 0.012729 4.8735E-06 -1.3246 -0.00050716 -1.3119 -0.00050229 382.881040632266 16.75 0.29494 16.755 16.587 16.882 0.0050545 49 18 4 0 0 0 0.69917 1 8460 8460 1.4551 0 1 9395900 37586 12633 25064 25551 44183 44183 0.055691460369416745 LSQEQRQL 8 Unmodified _LSQEQRQL_ 0 0 0 ENSG00000156574|ENST00000287139|NODAL ENSG00000156574|ENST00000287139|NODAL ENSG00000156574|ENST00000287139|NODAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7743530273438 2 501.272355 1000.53016 0.49038 0.00024581 -1.8585 -0.00093161 -1.3681 -0.0006858 501.773762950887 66.144 0.25105 66.144 66.03 66.281 0 25 11 3 0 0 0 0.61462 1 36923 36923 24.674 6.5389 1 2088500 37587 6468 25065 25552 44184 44184 0.02991384295091848 LSQFSSSVAPS 11 Unmodified _LSQFSSSVAPS_ 0 0 0 ENST00000342291.2_1_19:48967690-48967876:+|nuORF ENST00000342291.2_1_19:48967690-48967876:+|nuORF ENST00000342291.2_1_19:48967690-48967876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2787475585938 2 555.277303 1108.54005 0.73903 0.00041036 -0.23906 -0.00013274 0.49997 0.00027762 555.277259096093 47.971 0.3243 47.971 47.767 48.092 0 51 15 4 0 0 0 0.16515 1 26220 26220 34.932 0.53034 1 46039000 37588 11979 25066 25553 44185 44185 -0.009874724901919762 LSQHFPELLG 10 Unmodified _LSQHFPELLG_ 0 0 0 ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP ENSG00000215045|ENST00000457091|GRID2IP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.305908203125 2 570.806031 1139.59751 1.3228 0.00075507 0.90893 0.00051882 2.2317 0.0012739 570.8067533898952 97.875 0.24786 91.7 91.614 91.862 -6.1757 21 15 2 0 0 0 0.21985 1 64850 64850 13.615 2.8154 1 12132000 37589 10519 25067 25554 44186 44186 0.0332941450603812 LSQIPTPD 8 Unmodified _LSQIPTPD_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7327270507812 2 435.732 869.449448 NaN NaN NaN NaN NaN NaN NaN 28.765 1 28.703 28.203 29.203 -0.062159 0 0 0 0.53879 1 14858 14858 38.151 2.107 1 37590 9690 25068 25555 44187 44187 0.009501032521825437 LSQIPTPD 8 Unmodified _LSQIPTPD_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7327880859375 2 435.732 869.449448 0.95824 0.00041753 0.037144 1.6185E-05 0.99538 0.00043372 435.7320383902333 32.02 0.42172 28.325 28.105 28.527 -3.6958 70 23 4 0 0 0 0.46494 2 18114 18114;18239 38.151 2.107 1 86009000 37591 9690 25068 25555 44188;44189 44188 0.009501032521825437 LSQIYKMGSL 10 Unmodified _LSQIYKMGSL_ 0 0 0 ENSG00000170802|ENST00000340553|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 ENSG00000170802|ENST00000340553|FOXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.541748046875 3 380.542487 1138.60563 0.029066 1.1061E-05 -1.3035 -0.00049605 -1.2745 -0.00048499 380.54214181532336 15.396 0.14115 15.402 15.332 15.473 0.0057774 20 7 4 0 0 0 0.42143 1 7667 7667 13.519 0 1 3175100 37592 8025 25069 25556 44190 44190 0.04187225431178376 LSQKDGFDISY 11 Unmodified _LSQKDGFDISY_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.810791015625 2 636.808968 1271.60338 0.028565 1.8191E-05 0.70808 0.00045091 0.73664 0.0004691 636.8095412666796 59.473 0.31786 58.982 58.792 59.11 -0.49079 45 14 4 0 0 0 0.5942 1 32307 32307 19.362 4.9566 1 9219700 + 37593 18241 25070 25557 44191 44191 -0.021555317729507806 LSQKDGFDISY 11 Unmodified _LSQKDGFDISY_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8084716796875 2 636.808968 1271.60338 0.46929 0.00029885 -0.36776 -0.00023419 0.10153 6.4653E-05 637.3103375496858 66.971 0.42292 60.796 60.558 60.981 -6.1757 68 23 4 0 0 0 0.46197 1 43501 43501 28.495 11.382 1 82329000 + 37594 18241 25070 25557 44192 44192 -0.021555317729507806 LSQKDGFDISY 11 Unmodified _LSQKDGFDISY_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 636.808968 1271.60338 0.055224 3.5167E-05 0.4131 0.00026306 0.46832 0.00029823 636.8089624062256 58.781 0.19901 58.781 58.654 58.853 0 -0.10061 -0.00029221 NaN 19.362 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1477000 + 37595 18241 25070 25557 -0.021555317729507806 LSQKGPHVR 9 Unmodified _LSQKGPHVR_ 0 0 0 ENST00000460627.5_1_3:184100608-184100992:+|nuORF;ENST00000470150.5_1_3:184100608-184105741:+|nuORF ENST00000460627.5_1_3:184100608-184100992:+|nuORF ENST00000460627.5_1_3:184100608-184100992:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2972106933594 2 511.298707 1020.58286 0.12052 6.1621E-05 -0.75464 -0.00038585 -0.63412 -0.00032423 511.2983605112473 31.146 0.23742 31.176 31.059 31.296 0.030106 20 9 3 0 0 0 0.45045 1 16303 16303 10.074 1.3285 1 2014100 37596 13643 25071 25558 44193 44193 0.07339387148567766 LSQKKKKKKI 10 Unmodified _LSQKKKKKKI_ 0 0 0 ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.2877502441406 3 410.286969 1227.83908 NaN NaN NaN NaN NaN NaN NaN 106.19 1 100.02 99.517 100.52 -6.1757 0 0 0 1.0061 1 71095 71095 0 0 1 37597 11736 25072 25559 44194 44194 0.23427069932995437 LSQKKKKKKI 10 Unmodified _LSQKKKKKKI_ 0 0 0 ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.287841796875 3 410.286969 1227.83908 NaN NaN NaN NaN NaN NaN NaN 106.4 1 100.22 99.724 100.72 -6.1757 0 0 0 1.0061 1 71223 71223 0 0 1 37598 11736 25072 25559 44195 44195 0.23427069932995437 LSQKKKKKKI 10 Unmodified _LSQKKKKKKI_ 0 0 0 ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF ENST00000316399.10_1_11:15990515-15990713:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.2878723144531 3 410.286969 1227.83908 NaN NaN NaN NaN NaN NaN NaN 106.8 1 100.63 100.13 101.13 -6.1757 0 0 0 1.0061 1 71474 71474 0 0 1 37599 11736 25072 25559 44196 44196 0.23427069932995437 LSQLSLAGAL 10 Unmodified _LSQLSLAGAL_ 0 0 0 ENST00000493544.1_1_2:242054361-242072488:-|nuORF;nc|ENSG00000115687|Q96RG2-4|PASK;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK ENST00000493544.1_1_2:242054361-242072488:-|nuORF ENST00000493544.1_1_2:242054361-242072488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7900085449219 2 486.78985 971.565146 -0.50814 -0.00024736 0.85726 0.0004173 0.34912 0.00016995 486.7901605454191 48.649 0.29436 48.649 48.491 48.786 0 30 13 3 0 0 0 0.067957 1 26727 26727 53.833 3.8998 1 8179300 37600 3154 25073 25560 44197 44197 0.07822627103018931 LSQLVSDKPL 10 Unmodified _LSQLVSDKPL_ 0 0 0 nc|ENSG00000156110|P55263-3|ADK;ENSG00000156110|ENST00000539909|ADK;nc|ENSG00000156110|P55263-4|ADK;nc|ENSG00000156110|P55263-2|ADK nc|ENSG00000156110|P55263-3|ADK nc|ENSG00000156110|P55263-3|ADK MSMS AL20221201_MKP_PDAC_01 4 367.2194213867188 3 367.216768 1098.62847 NaN NaN NaN NaN NaN NaN NaN 50.969 1 45.32 44.82 45.82 -5.649 0 0 0 0.48286 1 32035 32035 27.088 1.091 1 37601 6429 25074 25561 44198 44198 0.08310567820262804 LSQNPLTYLL 10 Unmodified _LSQNPLTYLL_ 0 0 0 nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.3285522460938 2 581.329339 1160.64412 0.35788 0.00020804 -0.41325 -0.00024023 -0.055369 -3.2187E-05 581.3290950944636 74.967 0.34362 74.967 74.784 75.128 0 32 18 2 0 0 0 0.54684 1 41692 41692 13.906 0 1 1662000 37602 576 25075 25562 44199 44199 0.07022854337310491 LSQNPLTYLL 10 Unmodified _LSQNPLTYLL_ 0 0 0 nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 nc|ENSG00000029153|Q8WYA1-7|BMAL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 581.329339 1160.64412 0.72195 0.00041969 -1.3724 -0.00079783 -0.65047 -0.00037814 581.328487682902 75.432 0.49465 74.954 74.74 75.235 -0.47713 -0.0062243 -0.00041379 NaN 13.906 91 26 4 NaN NaN NaN NaN 0 NaN NaN 0 43014000 37603 576 25075 25562 0.07022854337310491 LSQNQGGKTF 10 Unmodified _LSQNQGGKTF_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67352445-67353745:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2792358398438 2 540.277638 1078.54072 0.68086 0.00036785 0.65798 0.00035549 1.3388 0.00072335 540.2781741422505 22.145 0.30253 19.41 19.219 19.522 -2.7348 29 16 2 0 0 0 0.14688 2 11825 11825;11943 40.239 12.61 1 2808200 37604 1386 25076 25563 44200;44201 44200 0.004593669495079666 LSQPYVEGLCV 11 Unmodified _LSQPYVEGLCV_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.2077026367188 3 403.205763 1206.59546 0.47729 0.00019245 2.4574 0.00099083 2.9347 0.0011833 403.2070639738377 53.986 0.21238 53.986 53.858 54.07 0 19 9 3 0 0 0 0.58219 1 29969 29969 6.6235 0.84002 1 1936800 37605 4537 25077 25564 44202 44202 0.00042617705935299455 LSQREKKE 8 Unmodified _LSQREKKE_ 0 0 0 ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1017.073913574219 1 1017.56873 1016.56146 0.64588 0.00065723 0.21156 0.00021528 0.85744 0.00087251 1017.5705195174106 59.538 0.075653 53.423 53.357 53.433 -6.1147 5 3 2 0 0 0 8.7369 1 38230 38230 15.847 9.6414 1 9577100 37606 5713 25078 25565 44203 44203 0.05383957329183886 LSQRPCRPR 9 Unmodified _LSQRPCRPR_ 0 0 0 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5426635742188 3 371.541703 1111.60328 0.90315 0.00033556 0.8439 0.00031355 1.7471 0.0006491 371.54193858791484 46.339 0.53684 46.305 46.059 46.596 -0.033417 48 25 2 0 0 0 0.55886 1 25040 25040 3.8763 1.7903 1 15272000 37607 7703 25079 25566 44204 44204 0.05194234536725162 LSQRPCRPR 9 Unmodified _LSQRPCRPR_ 0 0 0 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 371.541703 1111.60328 0.58957 0.00021905 0.52967 0.00019679 1.1192 0.00041584 371.541822630408 46.307 0.49868 46.307 46.108 46.607 0 0.00064309 -0.00017497 NaN 3.8763 44 23 2 NaN NaN NaN NaN 0 NaN NaN 0 2876700 37608 7703 25079 25566 0.05194234536725162 LSQSSSIMRLY 11 Unmodified _LSQSSSIMRLY_ 0 0 0 REV__ENST00000376811.5_2_9:77692110-77692434:-|nuORF REV__ENST00000376811.5_2_9:77692110-77692434:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.8911743164062 3 428.892067 1283.65437 NaN NaN NaN NaN NaN NaN NaN 40.601 1 40.601 40.101 41.101 0 0 0 0 0.92174 1 21836 21836 6.2344 2.1177 1 + 37609 26231 25080 25567 44205 44205 0.02389094000272962 LSQTCVEVCKN 11 Unmodified _LSQTCVEVCKN_ 0 0 0 REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF REV__ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2899780273438 2 612.291573 1222.56859 0.43444 0.00026601 -0.43104 -0.00026392 0.003407 2.0861E-06 612.2905944922207 70.747 0.20686 70.27 70.161 70.368 -0.47736 21 10 3 0 0 0 0.58219 1 38695 38695 12.241 0.74595 1 1487300 + 37610 23538 25081 25568 44206 44206 -0.033788141769036883 LSQTEEEDKEW 11 Unmodified _LSQTEEEDKEW_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.31005859375 2 697.309529 1392.6045 -0.34271 -0.00023897 0.090701 6.3247E-05 -0.25201 -0.00017573 697.3095965139655 34.441 1.3149 34.25 33.427 34.742 -0.19131 185 55 5 0 0 0 0.50515 1 17829 17829 16.149 5.3496 1 97401000 37611 8143 25082 25569 44207 44207 -0.07609362194739333 LSQTEEEDKEW 11 Unmodified _LSQTEEEDKEW_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.309814453125 2 697.309529 1392.6045 -0.4429 -0.00030884 0.31928 0.00022264 -0.12361 -8.6195E-05 697.3097308944016 35.271 0.70984 35.048 34.623 35.333 -0.2224 126 31 6 0 0 0 0.44182 2 18350 18350;18446 19.362 8.5624 1 192280000 37612 8143 25082 25569 44208;44209 44208 -0.07609362194739333 LSQTEEEDKEW 11 Unmodified _LSQTEEEDKEW_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46;nc|ENSG00000171811|Q8IYW2-3|CFAP46;ENST00000475340.1_1_10:134750974-134755988:-|nuORF;nc|ENSG00000171811|Q8IYW2-2|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.3098754882812 2 697.309529 1392.6045 0.13663 9.5276E-05 0.55473 0.00038682 0.69136 0.00048209 697.3099490864357 35.052 0.4511 35.08 34.818 35.27 0.027405 63 20 4 0 0 0 0.59689 1 18517 18517 11.495 0.6952 1 14832000 37613 8143 25082 25569 44210 44210 -0.07609362194739333 LSQTIKPKGL 10 Unmodified _LSQTIKPKGL_ 0 0 0 REV__nc|ENSG00000066294|Q9UIB8-7|CD84 REV__nc|ENSG00000066294|Q9UIB8-7|CD84 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.5891723632812 2 542.839874 1083.66519 NaN NaN NaN NaN NaN NaN NaN 102.62 1 102.57 102.07 103.07 -0.04673 0 0 0 0.99388 1 56999 56999 1.3295 0.13619 1 + 37614 17401 25083 25570 44211 44211 0.12670864436836382 LSQTRRWRRL 10 Unmodified _LSQTRRWRRL_ 0 0 0 ENST00000582659.5_1_17:19140722-19177409:+|nuORF ENST00000582659.5_1_17:19140722-19177409:+|nuORF ENST00000582659.5_1_17:19140722-19177409:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.27685546875 3 457.940855 1370.80073 1.6212 0.00074243 -0.34519 -0.00015807 1.276 0.00058435 457.94040748300876 104.94 0.13662 98.764 98.68 98.816 -6.1757 16 9 3 0 0 0 0.72044 1 70238 70238 0.62683 0.12087 1 20924000 37615 15576 25084 25571 44212 44212 0.13016577070993662 LSQVENRLLQN 11 Unmodified _LSQVENRLLQN_ 0 0 0 REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5 REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.579345703125 3 438.577247 1312.70991 0.22485 9.8615E-05 1.9649 0.00086175 2.1897 0.00096037 438.5779310421363 85.092 0.33038 78.916 78.72 79.05 -6.1757 45 19 3 0 0 0 0.53952 1 56075 56075 8.2864 0 1 35054000 + 37616 17403 25085 25572 44213 44213 0.06606643512259325 LSQWDPHWQRE 11 Unmodified _LSQWDPHWQRE_ 0 0 0 ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.5688781738281 3 494.568863 1480.68476 0.81488 0.00040301 -1.2526 -0.00061949 -0.43772 -0.00021648 494.56825680976795 40.612 0.28915 40.309 40.108 40.397 -0.30304 25 13 3 0 0 0 0.71938 1 21481 21481 2.4348 0.50728 1 3114500 37617 11478 25086 25573 44214 44214 -0.036354112903381974 LSQWDPHWQRE 11 Unmodified _LSQWDPHWQRE_ 0 0 0 ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF ENST00000293725.9_1_19:12433494-12444388:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 494.568863 1480.68476 0.058781 2.9071E-05 -0.33494 -0.00016565 -0.27616 -0.00013658 494.9028321819193 40.12 0.20636 40.12 40.03 40.236 0 -0.094441 0.0011237 NaN 2.4348 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1500900 37618 11478 25086 25573 -0.036354112903381974 LSQWRQSKFN 10 Unmodified _LSQWRQSKFN_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MSMS AL20221201_MKP_PDAC_01 4 431.8930358886719 3 431.894799 1292.66257 NaN NaN NaN NaN NaN NaN NaN 25.175 1 22.292 21.792 22.792 -2.8831 0 0 0 0.96104 1 13761 13761 2.6312 0.54727 1 + 37619 17670 25087 25574 44215 44215 0.027944090318896997 LSQYHRNPN 9 Unmodified _LSQYHRNPN_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7833251953125 2 564.780879 1127.5472 0.57859 0.00032677 2.639 0.0014905 3.2176 0.0018172 564.7829342045699 93.057 0.36047 92.6 92.501 92.862 -0.45741 27 17 3 0 0 0 0.55144 1 50966 50966 4.3292 0.73274 1 355580 + 37620 20613 25088 25575 44216 44216 -0.011466950991007252 LSQYRLLV 8 Unmodified _LSQYRLLV_ 0 0 0 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.3001708984375 2 496.300384 990.586216 0.058747 2.9156E-05 0.25728 0.00012769 0.31603 0.00015684 496.30065025563016 35.687 0.22089 35.687 35.615 35.836 0 19 10 3 0 0 0 0.66338 1 18911 18911 20.454 0 1 1747600 37621 1417 25089 25576 44217 44217 0.09054637202564209 LSQYRLLV 8 Unmodified _LSQYRLLV_ 0 0 0 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 ENSG00000085760|ENST00000263629|MTIF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3005981445312 2 496.300384 990.586216 0.37867 0.00018793 0.46221 0.0002294 0.84088 0.00041733 496.3004240825864 39.881 0.30799 35.351 35.078 35.386 -4.5294 32 19 2 0 0 0 0.50673 1 23658 23658 34.102 0 1 19668000 37622 1417 25089 25576 44218 44218 0.09054637202564209 LSQYVYRPKI 10 Unmodified _LSQYVYRPKI_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1 ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9119262695312 3 422.911679 1265.71321 0.2379 0.00010061 0.020629 8.7241E-06 0.25853 0.00010933 422.9114795802444 48.86 0.67901 48.817 48.516 49.195 -0.04369 112 33 6 0 0 0 0.67413 1 26531 26531 5.7834 0.73591 1 265230000 37623 4971 25090 25577 44219 44219 0.09097938356876512 LSRAIWSQP 9 Unmodified _LSRAIWSQP_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7905883789062 2 529.293091 1056.57163 1.0543 0.00055804 -4.2158 -0.0022314 -3.1614 -0.0016733 529.7921920214869 99.414 0.17764 93.239 93.128 93.306 -6.1757 29 11 4 0 0 0 0.16418 1 66150 66150 13.906 5.9959 1 47363000 37624 5770 25091 25578 44220 44220 0.04560565054430299 LSRALSRPL 9 Unmodified _LSRALSRPL_ 0 0 0 REV__ENST00000345990.8_2_5:122848044-122848200:+|nuORF REV__ENST00000345990.8_2_5:122848044-122848200:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8171081542969 2 506.816733 1011.61891 0.28823 0.00014608 -0.040817 -2.0687E-05 0.24742 0.00012539 506.81674774658103 28.606 0.28232 28.635 28.494 28.776 0.029564 22 10 3 0 0 0 0.14 1 14876 14876 29.082 0 1 6847200 + 37625 25757 25092 25579 44221 44221 0.11356844325405291 LSRALSRPL 9 Unmodified _LSRALSRPL_ 0 0 0 REV__ENST00000345990.8_2_5:122848044-122848200:+|nuORF REV__ENST00000345990.8_2_5:122848044-122848200:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.816733 1011.61891 0.28823 0.00014608 -0.040817 -2.0687E-05 0.24742 0.00012539 506.81674774658103 28.606 0.28232 28.635 28.494 28.776 0.029564 0.15358 8.6396E-05 NaN 29.082 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 6847200 + 37626 25757 25092 25579 0.11356844325405291 LSREASNLGF 10 Unmodified _LSREASNLGF_ 0 0 0 CON__ENSEMBL:ENSBTAP00000013050 CON__ENSEMBL:ENSBTAP00000013050 CON__ENSEMBL:ENSBTAP00000013050 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.287109375 2 547.285463 1092.55637 -0.19564 -0.00010707 -3.3585 -0.0018381 -3.5542 -0.0019451 547.2842084051397 85.022 0.53931 85.085 84.954 85.493 0.063171 29 21 2 0 0 0 0.046375 1 47221 47221 60.074 5.3004 1 17878000 + 37627 140 25093 25580 44222 44222 0.01379653466574382 LSRFRQFCV 9 Unmodified _LSRFRQFCV_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.307373046875 2 578.308218 1154.60188 NaN NaN NaN NaN NaN NaN NaN 28.714 1 28.651 28.151 29.151 -0.062159 0 0 0 0.84369 1 14829 14829 2.3027 0 1 + 37628 24387 25094 25581 44223 44223 0.030766004479573894 LSRFRQLY 8 Unmodified _LSRFRQLY_ 0 0 0 REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3 REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.30615234375 2 541.808908 1081.60326 -0.049877 -2.7024E-05 1.1819 0.00064037 1.132 0.00061334 541.8095798256987 66.36 0.21593 65.877 65.686 65.902 -0.48323 16 12 2 0 0 0 8.7369 1 36160 36160 13.508 4.9146 1 24056000 + 37629 23278 25095 25582 44224 44224 0.06572557808362944 LSRHFAVTSF 10 Unmodified _LSRHFAVTSF_ 0 0 0 REV__ENST00000407004.7_2_19:10795127-10795319:+|nuORF REV__ENST00000407004.7_2_19:10795127-10795319:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.8512573242188 3 388.876857 1163.60874 0.64852 0.0002522 0.23079 8.975E-05 0.87931 0.00034195 388.8768817220735 17.007 0.086464 14.421 14.36 14.447 -2.5866 24 17 2 0 0 0 0.23767 1 8821 8821 3.5871 3.3512 1 3352200 + 37630 26662 25096 25583 44225 44225 0.033482366001635455 LSRHQLGREAF 11 Unmodified _LSRHQLGREAF_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5746765136719 3 438.573949 1312.70002 NaN NaN NaN NaN NaN NaN NaN 57.682 1 57.192 56.692 57.692 -0.48974 0 0 0 0.92234 1 31351 31351 2.8433 0 1 37631 10278 25097 25584 44226 44226 0.056175002974896415 LSRIDDRSL 9 Unmodified _LSRIDDRSL_ 0 0 0 REV__ENSG00000160505|ENST00000301295|NLRP4 REV__ENSG00000160505|ENST00000301295|NLRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7982788085938 2 537.798737 1073.58292 -0.47483 -0.00025536 1.2238 0.00065815 0.74895 0.00040278 537.7991335105158 28.561 0.11826 28.561 28.503 28.621 0 8 5 2 0 0 0 0.05483 1 14782 14782 43.772 5.5968 1 1021900 + 37632 21548 25098 25585 44227 44227 0.04907342357910238 LSRITTFDF 9 Unmodified _LSRITTFDF_ 0 0 0 ENST00000539587.5_1_11:71791910-71806563:+|nuORF;nc|ENSG00000184154|Q96E66-6|LRRC51;ENSG00000184154|ENST00000289488|LRRC51;ENST00000324866.11_1_11:71806383-71806563:+|nuORF ENST00000539587.5_1_11:71791910-71806563:+|nuORF ENST00000539587.5_1_11:71791910-71806563:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2936401367188 2 550.292756 1098.57096 NaN NaN NaN NaN NaN NaN NaN 65.903 1 65.903 65.403 66.403 0 0 0 0 0.73776 1 36756 36756 7.9102 3.9658 1 37633 9224 25099 25586 44228 44228 0.025617256147143053 LSRKLKDVP 9 Unmodified _LSRKLKDVP_ 0 0 0 ENST00000467698.5_1_2:232123695-232137721:+|nuORF ENST00000467698.5_1_2:232123695-232137721:+|nuORF ENST00000467698.5_1_2:232123695-232137721:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.4323120117188 2 528.332216 1054.64988 NaN NaN NaN NaN NaN NaN NaN 78.285 1 77.799 77.299 78.299 -0.48596 0 0 0 0.84369 1 42876 42876 2.3027 0.4585 1 37634 13786 25100 25587 44229 44229 0.12473997639654044 LSRLDLRGE 9 Unmodified _LSRLDLRGE_ 0 0 0 REV__ENSG00000179627|ENST00000342537|ZBTB42 REV__ENSG00000179627|ENST00000342537|ZBTB42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5380249023438 3 353.536612 1057.58801 1.5223 0.0005382 0.94468 0.00033398 2.467 0.00087218 353.5369377150223 36.747 0.3252 32.464 32.324 32.65 -4.2835 33 19 2 0 0 0 0.28023 1 21570 21570 12.873 0.69786 1 11923000 + 37635 23107 25101 25588 44230 44230 0.06151646220519069 LSRPKRFY 8 Unmodified _LSRPKRFY_ 0 0 0 nc|ENSG00000105549|Q9P2T0-2|SPMAP2;ENSG00000105549|ENST00000342640|THEG nc|ENSG00000105549|Q9P2T0-2|SPMAP2 nc|ENSG00000105549|Q9P2T0-2|SPMAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.2582397460938 2 533.811451 1065.60835 0.54288 0.0002898 -0.86472 -0.0004616 -0.32184 -0.0001718 533.8111216899218 48.065 0.26121 42.831 42.711 42.973 -5.2339 25 15 2 0 0 0 8.7369 1 29829 29829 15.847 1.9411 1 11677000 37636 2333 25102 25589 44231 44231 0.07816861670994513 LSRQKRLQRWP 11 Unmodified _LSRQKRLQRWP_ 0 0 0 REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF REV__ENST00000370372.6_2_10:102045868-102046379:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 734.4356079101562 2 734.436401 1466.85825 NaN NaN NaN NaN NaN NaN NaN 88.283 1 88.336 87.836 88.836 0.053352 0 0 0 0.93969 1 49110 49110 2.7352 1.2533 1 + 37637 25942 25103 25590 44232 44232 0.14349419276572917 LSRRCFYL 8 Carbamidomethyl (C) _LSRRC(Carbamidomethyl (C))FYL_ LSRRC(1)FYL LSRRC(78)FYL 0 1 0 REV__ENST00000391835.1_1_19:50380125-50380224:-|nuORF REV__ENST00000391835.1_1_19:50380125-50380224:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.7937622070312 2 557.794943 1113.57533 NaN NaN NaN NaN NaN NaN NaN 57.946 1 51.919 51.419 52.419 -6.0275 0 0 0 0.2509 1 37099 37099 77.984 14.024 1 + 37638 26376 25104 25591 44233 44233 1057 0.023089115566108376 LSRRWRRWNRF 11 Unmodified _LSRRWRRWNRF_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MSMS AL20221201_MKP_PDAC_01 4 816.9614868164062 2 816.958366 1631.90218 NaN NaN NaN NaN NaN NaN NaN 82.072 1 75.896 75.396 76.396 -6.1757 0 0 0 0.94165 1 53898 53898 1.3295 1.3295 1 37639 6514 25105 25592 44234 44234 0.11150448493572185 LSRSFFSKW 9 Unmodified _LSRSFFSKW_ 0 0 0 REV__ENSG00000048342|ENST00000424120|CC2D2A REV__ENSG00000048342|ENST00000424120|CC2D2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.31103515625 2 579.308741 1156.60293 0.89775 0.00052007 0.95191 0.00055145 1.8497 0.0010715 579.3094335943051 75.031 2.1657 68.855 67.962 70.128 -6.1757 292 116 4 0 0 0 0.34134 1 49663 49663 21.747 21.747 1 63479000 + 37640 17238 25106 25593 44235 44235 0.030891380885123 LSRTLHEYF 9 Unmodified _LSRTLHEYF_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1;REV__ENSG00000197136|ENST00000355703|PCNX3 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2057495117188 3 389.204862 1164.59276 -0.37266 -0.00014504 1.1764 0.00045785 0.80372 0.00031281 389.20558113632524 31.768 0.19857 31.768 31.661 31.86 0 14 9 2 0 0 0 0.54213 1 16577 16577 4.897 3.8255 1 1553800 + 37641 18104;23899 25107 25594 44236 44236 0.017045303632812647 LSRTLHEYF 9 Unmodified _LSRTLHEYF_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1;REV__ENSG00000197136|ENST00000355703|PCNX3 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.204862 1164.59276 -0.37266 -0.00014504 1.1764 0.00045785 0.80372 0.00031281 389.20558113632524 31.768 0.19857 31.768 31.661 31.86 0 0 0 NaN 4.897 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1553800 + 37642 18104;23899 25107 25594 0.017045303632812647 LSRVGNILH 9 Unmodified _LSRVGNILH_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62 nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8018493652344 2 504.801083 1007.58761 0.91096 0.00045985 -0.19023 -9.6026E-05 0.72073 0.00036383 504.80088398794175 19.151 0.16181 16.495 16.373 16.534 -2.6564 14 10 2 0 0 0 0.19127 1 10124 10124 24.021 2.2739 1 1652100 37643 1167 25108 25595 44237 44237 0.08412271291331308 LSRWKKKRTRF 11 Unmodified _LSRWKKKRTRF_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 753.9610595703125 2 753.462419 1504.91028 1.5811 0.0011913 -3.6805 -0.0027731 -2.0994 -0.0015818 753.4598228878899 104.93 0.067924 98.755 98.736 98.803 -6.1757 6 4 2 0 0 0 0.74157 1 70270 70270 0.35063 0 1 9766000 + 37644 18669 25109 25596 44238 44238 0.17802582690319468 LSRWLWPPRV 10 Unmodified _LSRWLWPPRV_ 0 0 0 REV__ENST00000397967.4_1_14:21270181-21271013:-|nuORF REV__ENST00000397967.4_1_14:21270181-21271013:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2563171386719 3 437.25578 1308.74551 0.36008 0.00015745 0.22688 9.9205E-05 0.58696 0.00025665 437.2557858252458 42.208 0.30111 42.199 42.08 42.381 -0.0088196 34 13 3 0 0 0 0.72101 1 22671 22671 0.56317 0 1 22002000 + 37645 25699 25110 25597 44239 44239 0.10348770550513109 LSSANDIYL 9 Unmodified _LSSANDIYL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2555236816406 2 498.25584 994.497126 0.65284 0.00032528 -2.5177 -0.0012545 -1.8649 -0.00092919 498.25513858522726 73.212 0.39986 73.212 72.945 73.345 0 38 18 3 0 0 0 0.10734 1 40700 40700 32.305 5.4218 1 1743300 37646 7163 25111 25598 44240 44240 -0.00034242547633311915 LSSCSDCDEI 10 Unmodified _LSSCSDCDEI_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2015991210938 2 536.202089 1070.38963 0.70022 0.00037546 -0.82438 -0.00044204 -0.12416 -6.6575E-05 536.2016413234126 60.387 0.33622 60.387 60.199 60.536 0 38 14 4 0 0 0 0.66569 1 33638 33638 6.7232 1.9672 1 4327900 37647 4351 25112 25599 44241 44241 -0.14275323535684947 LSSFHALLL 9 Unmodified _LSSFHALLL_ 0 0 0 ENST00000361309.5_1_3:107799068-107799137:-|nuORF ENST00000361309.5_1_3:107799068-107799137:-|nuORF ENST00000361309.5_1_3:107799068-107799137:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.7953186035156 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 74.939 1 68.763 68.263 69.263 -6.1757 0 0 0 0.080768 1 48999 48999 48.346 2.3249 1 37648 12181 25113 25600 44242 44242 0.07551234828292763 LSSGFRGFEDH 11 Unmodified _LSSGFRGFEDH_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.7940673828125 2 626.291276 1250.568 0.62698 0.00039267 2.5848 0.0016188 3.2118 0.0020115 626.293373089765 69.287 0.26205 69.318 69.147 69.409 0.030922 24 12 3 0 0 0 0.29445 1 38102 38102 10.8 6.4703 1 12054000 + 37649 21600 25114 25601 44243 44243 -0.04726149510088362 LSSGNSGGIIL 11 Unmodified _LSSGNSGGIIL_ 0 0 0 ENST00000335420.9_1_7:129756374-129760615:+|nuORF ENST00000335420.9_1_7:129756374-129760615:+|nuORF ENST00000335420.9_1_7:129756374-129760615:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 509.2856140136719 2 509.282389 1016.55022 NaN NaN NaN NaN NaN NaN NaN 81.075 1 74.9 74.4 75.4 -6.1757 0 0 0 0.63856 1 53202 53202 19.362 1.227 1 37650 11898 25115 25602 44244 44244 0.04261135235049096 LSSHEEALSF 10 Unmodified _LSSHEEALSF_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1;ENST00000494904.1_1_1:65325735-65330472:-|nuORF ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.272705078125 2 560.269478 1118.5244 0.6974 0.00039073 2.9862 0.0016731 3.6836 0.0020638 560.2709422034247 84.338 0.24625 83.838 83.709 83.955 -0.49961 18 10 2 0 0 0 0.60623 1 46141 46141 10.824 0.75 1 776090 37651 6861 25116 25603 44245 44245 -0.030117590072450184 LSSIEGLQY 9 Unmodified _LSSIEGLQY_ 0 0 0 REV__ENSG00000137098|ENST00000396638|SPAG8 REV__ENSG00000137098|ENST00000396638|SPAG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2640380859375 2 505.263665 1008.51278 0.63608 0.00032139 -0.17971 -9.0801E-05 0.45637 0.00023059 505.2635534910378 72.738 0.63905 72.738 72.487 73.126 0 95 29 5 0 0 0 0.016184 2 40541 40440;40541 67.344 8.7605 1 70813000 + 37652 20213 25117 25604 44246;44247 44247 0.008860439694217348 LSSIEGLQY 9 Unmodified _LSSIEGLQY_ 0 0 0 REV__ENSG00000137098|ENST00000396638|SPAG8 REV__ENSG00000137098|ENST00000396638|SPAG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2638549804688 2 505.263665 1008.51278 0.219 0.00011065 -0.6623 -0.00033464 -0.44329 -0.00022398 505.2635466035576 72.889 0.3288 72.931 72.719 73.048 0.041725 25 15 2 0 0 0 0.2143 1 40106 40106 21.747 2.4897 1 4130200 + 37653 20213 25117 25604 44248 44248 0.008860439694217348 LSSIEGLQY 9 Unmodified _LSSIEGLQY_ 0 0 0 REV__ENSG00000137098|ENST00000396638|SPAG8 REV__ENSG00000137098|ENST00000396638|SPAG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.264404296875 2 505.263665 1008.51278 0.67182 0.00033945 0.36623 0.00018504 1.0381 0.00052449 505.26395684639203 81.926 0.71724 75.751 75.462 76.179 -6.1757 127 39 5 0 0 0 0.06187 1 53801 53801 42.095 0 1 303180000 + 37654 20213 25117 25604 44249 44249 0.008860439694217348 LSSIWLEP 8 Unmodified _LSSIWLEP_ 0 0 0 REV__ENSG00000117595|ENST00000367021|IRF6 REV__ENSG00000117595|ENST00000367021|IRF6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 473.2796020507812 2 472.758018 943.501483 1.5114 0.00071451 -3.8331 -0.0018121 -2.3217 -0.0010976 472.7550089362243 47.762 0.22096 42.529 42.42 42.641 -5.2339 15 13 2 0 0 0 8.7369 1 29643 29643 16.942 2.3606 1 5038600 + 37655 19116 25118 25605 44250 44250 0.027472666659605238 LSSKEDLGPVQ 11 Unmodified _LSSKEDLGPVQ_ 0 0 0 nc|ENSG00000180116|Q86WS4-3|REDIC1;nc|ENSG00000180116|Q86WS4-2|REDIC1;ENSG00000180116|ENST00000324616|C12orf40 nc|ENSG00000180116|Q86WS4-3|REDIC1 nc|ENSG00000180116|Q86WS4-3|REDIC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8139038085938 2 586.81151 1171.60847 NaN NaN NaN NaN NaN NaN NaN 18.944 1 18.951 18.451 19.451 0.0060463 0 0 0 0.94032 1 9620 9620 2.2828 0.43854 1 37656 8885 25119 25606 44251 44251 0.029527720896794563 LSSKKDRFT 9 Unmodified _LSSKKDRFT_ 0 0 0 REV__ENSG00000157578|ENST00000288350|LCA5L REV__ENSG00000157578|ENST00000288350|LCA5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3056030273438 2 541.303655 1080.59276 4.3534 0.0023565 -1.5216 -0.00082364 2.8318 0.0015329 541.3028933136844 99.151 0.13791 99.122 99.051 99.189 -0.028282 10 4 3 0 0 0 0.43463 1 55096 55096 10.824 0 1 1716600 + 37657 21391 25120 25607 44252 44252 0.05568530363279933 LSSLPGNI 8 Unmodified _LSSLPGNI_ 0 0 0 nc|ENSG00000186907|Q86UN3-2|RTN4RL2;ENSG00000186907|ENST00000335099|RTN4RL2 nc|ENSG00000186907|Q86UN3-2|RTN4RL2 nc|ENSG00000186907|Q86UN3-2|RTN4RL2 MSMS AL20221201_MKP_PDAC_01 4 400.7290344238281 2 400.729261 799.443968 NaN NaN NaN NaN NaN NaN NaN 27.957 1 24.809 24.309 25.309 -3.1482 0 0 0 0.25842 1 15539 15539 71.134 6.8973 1 37658 9519 25121 25608 44253 44253 0.03622424460388629 LSSNFNEW 8 Unmodified _LSSNFNEW_ 0 0 0 ENSG00000152977|ENST00000282928|ZIC1;ENSG00000043355|ENST00000376335|ZIC2 ENSG00000152977|ENST00000282928|ZIC1 ENSG00000152977|ENST00000282928|ZIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.4415893554688 1 996.442137 995.43486 -0.31009 -0.00030898 -0.31724 -0.00031611 -0.62732 -0.00062509 996.441807553202 55.927 0.27954 55.449 55.279 55.559 -0.47798 21 13 2 0 0 0 0.6895 1 30306 30306 18.135 0 1 3550000 37659 6225 25122 25609 44254 44254 -0.06303968895952039 LSSPAYKQL 9 Unmodified _LSSPAYKQL_ 0 0 0 REV__ENSG00000196233|ENST00000421806|LCOR REV__ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7822265625 2 503.782025 1005.5495 0.74625 0.00037594 0.25084 0.00012637 0.99709 0.00050231 503.78204479014335 42.237 0.57296 37.553 37.234 37.807 -4.6846 98 36 4 0 0 0 0.03568 1 25507 25507 52.268 2.3353 1 106820000 + 37660 23806 25123 25610 44255 44255 0.04694340585979262 LSSPHPGP 8 Unmodified _LSSPHPGP_ 0 0 0 ENST00000318876.9_1_14:73437074-73437530:-|nuORF ENST00000318876.9_1_14:73437074-73437530:-|nuORF ENST00000318876.9_1_14:73437074-73437530:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.2056579589844 2 396.205953 790.397353 -0.061046 -2.4187E-05 -0.58617 -0.00023225 -0.64722 -0.00025643 396.20556040443387 32.231 0.23878 32.102 31.961 32.199 -0.12915 10 8 2 0 0 0 0.78849 1 16793 16793 9.3474 0 1 897070 37661 11753 25124 25611 44256 44256 -0.006230153709111619 LSSPMLSPYL 10 Unmodified _LSSPMLSPYL_ 0 0 0 REV__ENSG00000186440|ENST00000641540|OR6P1 REV__ENSG00000186440|ENST00000641540|OR6P1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.2593994140625 2 554.291368 1106.56818 1.4763 0.0008183 -1.0651 -0.00059035 0.41125 0.00022795 554.2911492619535 64.356 0.83835 58.18 57.652 58.49 -6.1757 107 45 4 0 0 0 0.22941 1 41870 41870 13.906 0 1 90785000 + 37662 23574 25125 25612 44257 44257 0.01916134165526273 LSSPPGLMLY 10 Unmodified _LSSPPGLMLY_ 0 0 0 REV__ENST00000342607.10_1_12:122213795-122213957:+|nuORF REV__ENST00000342607.10_1_12:122213795-122213957:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2883911132812 2 539.286085 1076.55762 0.1766 9.5238E-05 3.7717 0.002034 3.9483 0.0021293 539.2886281853554 77.695 1.4244 77.747 76.802 78.226 0.052452 115 59 3 0 0 0 0.44373 1 42394 42394 19.257 3.4098 1 16716000 + 37663 25721 25126 25613 44258 44258 0.022401515111141634 LSSPYSFIF 9 Unmodified _LSSPYSFIF_ 0 0 0 ENST00000482246.5_1_1:155141918-155145739:-|nuORF ENST00000482246.5_1_1:155141918-155145739:-|nuORF ENST00000482246.5_1_1:155141918-155145739:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7731323242188 2 530.771126 1059.5277 0.52594 0.00027916 1.0536 0.00055923 1.5796 0.00083838 530.7714803976738 99.621 0.2338 93.446 93.324 93.558 -6.1757 36 14 3 0 0 0 0.2001 1 66367 66367 23.148 0 1 312340000 37664 14097 25127 25614 44259 44259 0.00031535837410956447 LSSQKRETL 9 Unmodified _LSSQKRETL_ 0 0 0 ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE MSMS AL20221201_MKP_PDAC_01 4 531.3040161132812 2 531.301113 1060.58767 NaN NaN NaN NaN NaN NaN NaN 94.733 1 88.557 88.057 89.057 -6.1757 0 0 0 0.50124 1 62751 62751 15.847 1.0089 1 37665 3079 25128 25615 44260 44260 0.0598022650067378 LSSQRLHFQQF 11 Unmodified _LSSQRLHFQQF_ 0 0 0 nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B nc|ENSG00000135436|Q8IYM0-2|FAM186B nc|ENSG00000135436|Q8IYM0-2|FAM186B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 695.8662719726562 2 695.864943 1389.71533 0.19842 0.00013807 0.1516 0.0001055 0.35002 0.00024357 695.8651434827611 34.657 0.23453 34.684 34.584 34.818 0.027401 22 10 4 0 0 0 0.48742 1 18273 18273 16.149 0 1 4182300 37666 4705 25129 25616 44261 44261 0.036063670946759885 LSSRHPML 8 Unmodified _LSSRHPML_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7554931640625 2 470.755287 939.496021 0.42798 0.00020147 -0.058204 -2.74E-05 0.36977 0.00017407 470.75530210884926 84.388 0.34637 78.212 78.068 78.414 -6.1757 29 19 2 0 0 0 0.6895 1 55475 55475 18.135 0 1 18254000 37667 10371 25130 25617 44262 44262 0.023852646024920432 LSSRMPHL 8 Unmodified _LSSRMPHL_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7591857910156 2 470.755287 939.496021 -0.42296 -0.00019911 -0.43353 -0.00020409 -0.85649 -0.0004032 470.75529834011064 77.263 0.26746 76.78 76.58 76.848 -0.4826 19 11 2 0 0 0 0.72953 1 42333 42333 14.582 0 1 2184000 37668 4858 25131 25618 44263 44263 0.023852646024920432 LSSRSHTV 8 Unmodified _LSSRSHTV_ 0 0 0 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 ENSG00000166813|ENST00000394412|KIF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7426452636719 2 443.740691 885.466829 NaN NaN NaN NaN NaN NaN NaN 19.315 1 19.315 18.815 19.815 0 0 0 0 0.97444 1 9652 9652 4.3292 0 1 37669 7533 25132 25619 44264 44264 0.0195144357786603 LSSRTFSMAD 10 Unmodified _LSSRTFSMAD_ 0 0 0 ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7633056640625 2 557.763506 1113.51246 -0.71976 -0.00040145 -0.4379 -0.00024424 -1.1577 -0.0006457 557.7635220483505 32.241 0.16977 32.241 32.164 32.334 0 22 8 3 0 0 0 0.48505 1 16816 16816 17.113 5.6182 1 4031800 37670 13807 25133 25620 44265 44265 -0.03975699022066692 LSSRTFSMAD 10 Unmodified _LSSRTFSMAD_ 0 0 0 ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF ENST00000468376.2_1_20:45867286-45947776:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.763916015625 2 557.763506 1113.51246 1.3528 0.00075452 0.59057 0.0003294 1.9433 0.0010839 557.7639006802509 37.382 0.22216 33.099 32.974 33.196 -4.2835 17 12 2 0 0 0 0.38092 1 21946 21946 22.736 4.6013 1 7136600 37671 13807 25133 25620 44266 44266 -0.03975699022066692 LSSSYIYNL 9 Unmodified _LSSSYIYNL_ 0 0 0 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MSMS AL20221201_MKP_PDAC_01 4 530.2734375 2 530.27149 1058.52843 NaN NaN NaN NaN NaN NaN NaN 95.286 1 89.11 88.61 89.61 -6.1757 0 0 0 0.22437 1 63113 63113 29.082 0 1 + 37672 22719 25134 25621 44267 44267 0.0015033048646273528 LSSTVKNHF 9 Unmodified _LSSTVKNHF_ 0 0 0 ENST00000446527.5_1_1:101542987-101549071:+|nuORF ENST00000446527.5_1_1:101542987-101549071:+|nuORF ENST00000446527.5_1_1:101542987-101549071:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7777709960938 2 516.777274 1031.53999 NaN NaN NaN NaN NaN NaN NaN 32.312 1 32.183 31.683 32.683 -0.12915 0 0 0 0.83049 1 16820 16820 3.9444 1.3669 1 37673 13465 25135 25622 44268 44268 0.02548572300474916 LSSTVVTPML 10 Unmodified _LSSTVVTPML_ 0 0 0 ENSG00000170782|ENST00000379829|OR10A4 ENSG00000170782|ENST00000379829|OR10A4 ENSG00000170782|ENST00000379829|OR10A4 MSMS AL20221201_MKP_PDAC_01 4 524.3023071289062 2 524.291368 1046.56818 NaN NaN NaN NaN NaN NaN NaN 102.1 1 95.921 95.421 96.421 -6.1757 0 0 0 0.71851 1 68525 68525 15.847 2.3393 1 37674 8022 25136 25623 44269 44269 0.04676134165538315 LSSVRRTKPPK 11 Unmodified _LSSVRRTKPPK_ 0 0 0 REV__ENSG00000189132|ENST00000329357|FAM47B REV__ENSG00000189132|ENST00000329357|FAM47B MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5979919433594 3 423.598094 1267.77245 1.2432 0.00052661 -0.74093 -0.00031386 0.50225 0.00021275 423.59763193270555 101.29 0.16421 95.11 95.046 95.211 -6.1757 23 9 3 0 0 0 0.71938 1 67934 67934 2.4348 1.6583 1 47613000 + 37675 23764 25137 25624 44270 44270 0.1492783437106482 LSSVYYSVAA 10 Unmodified _LSSVYYSVAA_ 0 0 0 ENST00000504327.1_1_3:98501668-98501887:+|nuORF ENST00000504327.1_1_3:98501668-98501887:+|nuORF ENST00000504327.1_1_3:98501668-98501887:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.2726440429688 2 530.27149 1058.52843 NaN NaN NaN NaN NaN NaN NaN 35.054 1 30.958 30.458 31.458 -4.0951 0 0 0 0.034324 1 20284 20284 61.357 9.0891 1 37676 14492 25138 25625 44271 44271 0.0015033048646273528 LSSWVSVTGF 10 Unmodified _LSSWVSVTGF_ 0 0 0 HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|175|3|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|175|3|sense HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|175|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7784423828125 2 541.779482 1081.54441 NaN NaN NaN NaN NaN NaN NaN 64.395 1 63.91 63.41 64.41 -0.48512 0 0 0 0.76313 1 35133 35133 13.906 0.86358 1 37677 15909 25139 25626 44272 44272 0.0069003672338112665 LSSWVYVSMP 10 Unmodified _LSSWVYVSMP_ 0 0 0 REV__ENST00000555499.1_1_14:75498822-75509100:-|nuORF REV__ENST00000555499.1_1_14:75498822-75509100:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1964111328125 3 390.195087 1167.56343 NaN NaN NaN NaN NaN NaN NaN 11.016 1 8.5342 8.0342 9.0342 -2.482 0 0 0 0.99091 1 5546 5546 0.69767 0 1 + 37678 28770 25140 25627 44273 44273 -0.01364749977210522 LSSWVYVSMP 10 Unmodified _LSSWVYVSMP_ 0 0 0 REV__ENST00000555499.1_1_14:75498822-75509100:-|nuORF REV__ENST00000555499.1_1_14:75498822-75509100:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1967163085938 3 390.195087 1167.56343 NaN NaN NaN NaN NaN NaN NaN 11.19 1 8.7081 8.2081 9.2081 -2.482 0 0 0 0.99091 1 5632 5632 0.69767 0 1 + 37679 28770 25140 25627 44274 44274 -0.01364749977210522 LSSYSYVLF 9 Unmodified _LSSYSYVLF_ 0 0 0 ENSG00000149133|ENST00000278409|OR5F1 ENSG00000149133|ENST00000278409|OR5F1 ENSG00000149133|ENST00000278409|OR5F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.77978515625 2 539.776408 1077.53826 -0.19639 -0.00010601 -0.11853 -6.3979E-05 -0.31492 -0.00016999 539.7766430235391 51.356 0.50986 51.302 51.087 51.597 -0.053875 76 25 5 0 0 0 0.39863 1 27694 27694 12.532 0.29089 1 7222200 37680 5984 25141 25628 44275 44275 0.002595184918391169 LSTCLNHYL 9 Unmodified _LSTCLNHYL_ 0 0 0 REV__ENSG00000076003|ENST00000264156|MCM6 REV__ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2696533203125 2 532.265684 1062.51682 -0.46903 -0.00024965 -3.1164 -0.0016588 -3.5855 -0.0019084 532.2634007979992 77.186 0.35083 76.703 76.497 76.848 -0.4826 30 15 3 0 0 0 0.41742 1 42201 42201 11.64 1.5664 1 1158100 + 37681 17580 25142 25629 44276 44276 -0.011941898085069624 LSTFLGPNSI 10 Unmodified _LSTFLGPNSI_ 0 0 0 REV__ENSG00000095627|ENST00000695399|TDRD1 REV__ENSG00000095627|ENST00000695399|TDRD1 MSMS AL20221201_MKP_PDAC_01 4 350.1952819824219 3 350.193963 1047.56006 NaN NaN NaN NaN NaN NaN NaN 17.477 1 14.891 14.391 15.391 -2.5866 0 0 0 0.77204 1 9141 9141 13.519 5.6085 1 + 37682 17947 25143 25630 44277 44277 0.03818323240443533 LSTFNELNF 9 Unmodified _LSTFNELNF_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7695922851562 2 542.769114 1083.52368 0.46113 0.00025029 2.0092 0.0010905 2.4703 0.0013408 542.7699251519421 90.08 0.33556 90.122 89.966 90.302 0.042175 30 11 4 0 0 0 0.55144 1 50145 50145 4.3292 0 1 12141000 + 37683 21753 25144 25631 44278 44278 -0.014745536562713824 LSTGNISMI 9 Unmodified _LSTGNISMI_ 0 0 0 REV__nc|ENSG00000107282|Q02410-2|APBA1 REV__nc|ENSG00000107282|Q02410-2|APBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2481384277344 2 468.24696 934.479368 0.47101 0.00022055 0.39292 0.00018398 0.86392 0.00040453 468.2469858148626 79.15 0.33796 78.664 78.461 78.799 -0.48596 20 14 2 0 0 0 0.52067 1 43367 43367 6.2058 0 1 514360 + 37684 18558 25145 25632 44279 44279 0.00950718925878391 LSTGNISMI 9 Unmodified _LSTGNISMI_ 0 0 0 REV__nc|ENSG00000107282|Q02410-2|APBA1 REV__nc|ENSG00000107282|Q02410-2|APBA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 468.24696 934.479368 0.34203 0.00016016 0.82362 0.00038566 1.1657 0.00054581 468.2471631382768 78.664 0.1521 78.716 78.576 78.728 0.052452 0.026038 0.00025488 NaN 6.2058 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 895460 + 37685 18558 25145 25632 0.00950718925878391 LSTHRLEM 8 Unmodified _LSTHRLEM_ 0 0 0 REV__ENST00000527664.1_1_8:110592124-110692982:-|nuORF REV__ENST00000527664.1_1_8:110592124-110692982:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 493.7574462890625 2 493.758027 985.5015 NaN NaN NaN NaN NaN NaN NaN 84.512 1 78.336 77.836 78.836 -6.1757 0 0 0 0.75749 1 55603 55603 25.399 4.9457 1 + 37686 28396 25146 25633 44280 44280 0.008169433943066906 LSTHRLEM 8 Unmodified _LSTHRLEM_ 0 0 0 REV__ENST00000527664.1_1_8:110592124-110692982:-|nuORF REV__ENST00000527664.1_1_8:110592124-110692982:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 493.7582702636719 2 493.758027 985.5015 NaN NaN NaN NaN NaN NaN NaN 84.715 1 78.539 78.039 79.039 -6.1757 0 0 0 0.69365 1 55752 55752 28.487 0 1 + 37687 28396 25146 25633 44281 44281 0.008169433943066906 LSTKYELT 8 Unmodified _LSTKYELT_ 0 0 0 REV__nc|ENSG00000150672|Q15700|DLG2 REV__nc|ENSG00000150672|Q15700|DLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.5119018554688 1 954.514239 953.506963 0.072285 6.8998E-05 0.50298 0.0004801 0.57527 0.0005491 954.5145353299662 47.986 0.28218 47.986 47.81 48.092 0 30 13 3 0 0 0 0.67481 1 26359 26359 19.439 2.4967 1 6307600 + 37688 21032 25147 25634 44282 44282 0.028349454577551114 LSTLILPTGP 10 Unmodified _LSTLILPTGP_ 0 0 0 REV__ENST00000460968.1_1_2:74666898-74667252:-|nuORF REV__ENST00000460968.1_1_2:74666898-74667252:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.3092041015625 2 506.307875 1010.6012 0.43388 0.00021968 1.908 0.00096604 2.3419 0.0011857 506.3093152974092 88.199 0.29094 88.199 88.053 88.344 0 22 13 2 0 0 0 0.71123 1 48785 48785 1.6526 0 1 930000 + 37689 25368 25148 25635 44283 44283 0.09632084279905939 LSTLYKIMN 9 Unmodified _LSTLYKIMN_ 0 0 0 REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF REV__ENST00000297785.7_1_9:75524650-75527037:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2919311523438 2 541.79936 1081.58417 0.43172 0.0002339 -3.7141 -0.0020123 -3.2824 -0.0017784 541.7970615024439 71.959 0.28326 71.998 71.809 72.092 0.039024 20 13 2 0 0 0 0.1325 1 39563 39563 32.305 1.6689 1 2603500 + 37690 25282 25149 25636 44284 44284 0.046638404024406555 LSTRTAHEI 9 Unmodified _LSTRTAHEI_ 0 0 0 ENST00000589459.5_1_17:66423364-66453609:-|nuORF ENST00000589459.5_1_17:66423364-66453609:-|nuORF ENST00000589459.5_1_17:66423364-66453609:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2824096679688 2 514.28018 1026.54581 0.91872 0.00047248 3.3514 0.0017235 4.2701 0.002196 514.2826059471304 87.304 0.27875 81.129 80.999 81.277 -6.1757 18 14 2 0 0 0 0.30202 1 57606 57606 17.113 0.1706 1 5443600 37691 15671 25150 25637 44285 44285 0.033596708121422125 LSTRWPAR 8 Unmodified _LSTRWPAR_ 0 0 0 REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2813415527344 2 493.780151 985.545748 1.0192 0.00050326 -0.67717 -0.00033437 0.34203 0.00016889 493.77972985370957 19.465 0.27965 16.808 16.675 16.955 -2.6564 58 27 3 0 0 0 0.27285 1 10266 10266 58.679 10.93 1 15249000 + 37692 24755 25151 25638 44286 44286 0.05239715602795059 LSTRWPAR 8 Unmodified _LSTRWPAR_ 0 0 0 REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7810668945312 2 493.780151 985.545748 0.54946 0.00027131 0.12147 5.9977E-05 0.67092 0.00033129 493.78015937769385 29.995 0.32351 26.498 26.308 26.631 -3.497 35 15 3 0 0 0 0.46677 1 16835 16835 37.974 6.7057 1 85293000 + 37693 24755 25151 25638 44287 44287 0.05239715602795059 LSTRWPAR 8 Unmodified _LSTRWPAR_ 0 0 0 REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF REV__ENST00000219368.7_1_16:74773991-74808682:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.2813415527344 2 493.780151 985.545748 1.0192 0.00050326 -0.67717 -0.00033437 0.34203 0.00016889 493.77972985370957 19.465 0.27965 16.808 16.675 16.955 -2.6564 58 27 3 0 0 0 8.7369 1 10266 10266 58.679 10.93 1 15249000 + 37694 24755 25151 25638 44288 44288 0.05239715602795059 LSTVALRLA 9 Unmodified _LSTVALRLA_ 0 0 0 REV__nc|ENSG00000163867|O95789-5|ZMYM6 REV__nc|ENSG00000163867|O95789-5|ZMYM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.3010864257812 2 472.300384 942.586216 1.5235 0.00071953 -0.45989 -0.0002172 1.0636 0.00050232 472.3002330120678 103.44 0.044205 97.262 97.238 97.282 -6.1757 4 2 2 0 0 0 0.55144 1 69358 69358 4.3292 0 1 13390000 + 37695 21826 25152 25639 44289 44289 0.11262637202548831 LSTWAGQAPSL 11 Unmodified _LSTWAGQAPSL_ 0 0 0 ENST00000279249.2_1_11:65089055-65089217:+|nuORF ENST00000279249.2_1_11:65089055-65089217:+|nuORF ENST00000279249.2_1_11:65089055-65089217:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7962036132812 2 565.795663 1129.57677 0.2515 0.0001423 -3.7706 -0.0021334 -3.5191 -0.0019911 565.7930319627665 43.334 0.11751 43.334 43.262 43.379 0 11 5 3 0 0 0 0.30985 1 23547 23547 26.268 3.5319 1 3398800 37696 11403 25153 25640 44290 44290 0.01716824126378924 LSTYVDSF 8 Unmodified _LSTYVDSF_ 0 0 0 REV__nc|ENSG00000214435|Q9HBK9-2|AS3MT REV__nc|ENSG00000214435|Q9HBK9-2|AS3MT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2220153808594 2 466.224008 930.433463 NaN NaN NaN NaN NaN NaN NaN 73.036 1 73.077 72.577 73.577 0.041725 0 0 0 0.88073 1 40233 40233 19.439 3.6708 1 + 37697 24313 25154 25641 44291 44291 -0.03453602984711779 LSVANAWPLL 10 Unmodified _LSVANAWPLL_ 0 0 0 REV__ENST00000485767.1_1_9:124072835-124073156:+|nuORF REV__ENST00000485767.1_1_9:124072835-124073156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3141479492188 2 542.313492 1082.61243 0.51026 0.00027672 -1.3859 -0.0007516 -0.87565 -0.00047487 542.3133280665593 50.823 0.37738 50.77 50.608 50.986 -0.053871 57 18 4 0 0 0 0.69064 1 27607 27607 3.9444 0 1 12844000 + 37698 27783 25155 25642 44292 44292 0.07442906374035374 LSVANNRLVRM 11 Unmodified _LSVANNRLVRM_ 0 0 0 nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF nc|ENSG00000182504|Q8IW35-2|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.9139404296875 3 424.911685 1271.71322 0.74398 0.00031612 1.4957 0.00063556 2.2397 0.00095168 424.9123453904793 36.569 0.66575 32.286 31.905 32.571 -4.2835 114 40 4 0 0 0 0.53099 1 21409 21409 14.838 0.61973 1 112960000 37699 9060 25156 25643 44293 44293 0.08823615085225356 LSVDTLALISL 11 Unmodified _LSVDTLALISL_ 0 0 0 REV__nc|ENSG00000290649|Q8NH63|OR51H1 REV__nc|ENSG00000290649|Q8NH63|OR51H1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.1767578125 3 382.232307 1143.67509 1.5861 0.00060624 -2.0112 -0.00076873 -0.42511 -0.00016249 382.2317247279109 20.47 0.29427 17.778 17.627 17.921 -2.693 29 14 3 0 0 0 0.27833 1 10962 10962 21.799 3.4264 1 3349200 + 37700 30031 25157 25644 44294 44294 0.10900007651571286 LSVEADINGL 10 Unmodified _LSVEADINGL_ 0 0 0 CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF CON__P19001 CON__P19001 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7744140625 2 515.774396 1029.53424 0.51486 0.00026555 2.9716 0.0015327 3.4864 0.0017982 516.2766764276688 100.59 0.19624 94.414 94.36 94.556 -6.1757 21 13 3 0 0 0 0.04925 1 67308 67308 58.679 12.658 1 24038000 + 37701 173 25158 25645 44295 44295 0.02065428998139396 LSVEDILNL 9 Unmodified _LSVEDILNL_ 0 0 0 ENSG00000171951|ENST00000305409|SCG2 ENSG00000171951|ENST00000305409|SCG2 ENSG00000171951|ENST00000305409|SCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2880554199219 2 508.28714 1014.55973 0.58378 0.00029673 1.5245 0.0007749 2.1083 0.0010716 508.2880163061859 68.212 0.38357 62.036 61.906 62.289 -6.1757 37 22 2 0 0 0 0.12424 1 44547 44547 30.637 0.41173 1 27110000 37702 8165 25159 25646 44296 44296 0.05302903520566815 LSVGAPSIVF 10 Unmodified _LSVGAPSIVF_ 0 0 0 REV__ENSG00000253309|ENST00000681248|SERPINE3 REV__ENSG00000253309|ENST00000681248|SERPINE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.287841796875 2 495.286943 988.559333 0.8341 0.00041312 0.26869 0.00013308 1.1028 0.0005462 495.28709894936014 76.034 1.05 69.858 69.009 70.059 -6.1757 76 56 2 0 0 0 0.16524 1 49603 49603 37.974 0 1 12830000 + 37703 24510 25160 25647 44297 44297 0.0645952859136969 LSVGDGFFFL 10 Unmodified _LSVGDGFFFL_ 0 0 0 REV__ENST00000459993.5_1_3:56655037-56655307:-|nuORF REV__ENST00000459993.5_1_3:56655037-56655307:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7593383789062 2 551.2844 1100.55425 0.99055 0.00054607 -0.78073 -0.0004304 0.20982 0.00011567 551.2840189541303 80.227 0.45528 79.737 79.428 79.884 -0.48932 24 17 2 0 0 0 0.22811 1 43896 43896 14.838 10.894 1 1115500 + 37704 27287 25161 25648 44298 44298 0.007992247287802456 LSVGDGFFFL 10 Unmodified _LSVGDGFFFL_ 0 0 0 REV__ENST00000459993.5_1_3:56655037-56655307:-|nuORF REV__ENST00000459993.5_1_3:56655037-56655307:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.2844 1100.55425 0.21074 0.00011618 1.3943 0.00076864 1.605 0.00088482 551.2854047747376 79.675 0.19237 79.73 79.602 79.795 0.05497 -0.003732 0.0017806 NaN 14.838 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1150200 + 37705 27287 25161 25648 0.007992247287802456 LSVGILAKE 9 Unmodified _LSVGILAKE_ 0 0 0 ENSG00000164414|ENST00000369552|SLC35A1;nc|ENSG00000164414|P78382-2|SLC35A1;ENST00000506888.5_1_6:88187111-88216600:+|nuORF ENSG00000164414|ENST00000369552|SLC35A1 ENSG00000164414|ENST00000369552|SLC35A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7891235351562 2 465.286943 928.559333 0.83124 0.00038677 -0.10233 -4.7612E-05 0.72891 0.00033915 465.28679303001365 74.276 0.23894 74.276 74.15 74.388 0 17 10 2 0 0 0 0.43463 1 41324 41324 10.824 0 1 414360 37706 7192 25162 25649 44299 44299 0.09219528591358994 LSVHAGFL 8 Unmodified _LSVHAGFL_ 0 0 0 REV__TOPORS|p.G312V|1|0.17|ENSG00000197579|chr9:32543590-32543590|C/A|missense_variant REV__TOPORS|p.G312V|1|0.17|ENSG00000197579|chr9:32543590-32543590|C/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.8730773925781 2 422.239796 842.465038 0.89912 0.00037964 -0.67772 -0.00028616 0.2214 9.3484E-05 422.2391682365368 56.903 0.46126 50.927 50.703 51.164 -5.9769 41 27 2 0 0 0 8.7369 1 36409 36409 18.135 6.4947 1 45905000 + 37707 30123 25163 25650 44300 44300 0.03750434559901805 LSVHFHPSV 9 Unmodified _LSVHFHPSV_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MSMS AL20221201_MKP_PDAC_01 4 511.7724914550781 2 511.774534 1021.53451 NaN NaN NaN NaN NaN NaN NaN 78.872 1 72.697 72.197 73.197 -6.1757 0 0 0 0.53226 1 51659 51659 14.838 0.93222 1 37708 3164 25164 25651 44301 44301 0.02460893508657591 LSVIETLRI 9 Unmodified _LSVIETLRI_ 0 0 0 REV__ENSG00000153989|ENST00000368494|NUS1 REV__ENSG00000153989|ENST00000368494|NUS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3267211914062 2 522.326599 1042.63865 1.4034 0.00073306 -0.57136 -0.00029844 0.83208 0.00043462 522.3265310406468 100.1 0.2653 93.926 93.838 94.103 -6.1757 46 16 4 0 0 0 0.07916 1 67002 67002 37.974 0 1 54551000 + 37709 21201 25165 25652 44302 44302 0.11903175545512568 LSVIGNPKGP 10 Unmodified _LSVIGNPKGP_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2904663085938 2 491.290017 980.565481 -0.012963 -6.3685E-06 0.81172 0.00039879 0.79876 0.00039242 491.2903257513585 52.354 0.24396 52.354 52.199 52.443 0 13 10 2 0 0 0 0.46514 1 28961 28961 18.146 1.0335 1 691580 + 37710 17207 25166 25653 44303 44303 0.07442046822893644 LSVITVQRR 9 Unmodified _LSVITVQRR_ 0 0 0 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1;nc|ENSG00000151466|Q96NL6-3|SCLT1;nc|ENSG00000151466|Q96NL6-2|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3538818359375 2 536.33529 1070.65603 1.4855 0.00079672 1.2607 0.00067618 2.7462 0.0014729 536.3350168657333 109.08 0.25476 102.9 102.77 103.02 -6.1757 81 50 2 0 0 0 0.60485 1 72816 72816 0.52476 0 1 3352200 37711 6116 25167 25654 44304 44304 0.12352515871180003 LSVITVQRR 9 Unmodified _LSVITVQRR_ 0 0 0 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1;nc|ENSG00000151466|Q96NL6-3|SCLT1;nc|ENSG00000151466|Q96NL6-2|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.0187377929688 2 536.33529 1070.65603 1.485 0.00079645 1.4157 0.00075928 2.9007 0.0015557 536.8384839522769 109.47 0.15158 103.29 103.22 103.37 -6.1757 44 34 2 0 0 0 0.21893 1 73141 73141 0.52476 0 1 2827200 37712 6116 25167 25654 44305 44305 0.12352515871180003 LSVKVDKLY 9 Unmodified _LSVKVDKLY_ 0 0 0 REV__CON__Q3Y5Z3 REV__CON__Q3Y5Z3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.7418212890625 2 532.82115 1063.62775 0.68288 0.00036385 0.7745 0.00041267 1.4574 0.00077652 532.8214942487522 48.221 0.236 42.987 42.851 43.087 -5.2339 14 13 2 0 0 0 0.209 1 30040 30040 3.9444 0 1 5867700 + + 37713 16879 25168 25655 44306 44306 0.0984777317123644 LSVLVRQR 8 Unmodified _LSVLVRQR_ 0 0 0 ENST00000360003.7_1_10:121591059-121591560:-|nuORF ENST00000360003.7_1_10:121591059-121591560:-|nuORF ENST00000360003.7_1_10:121591059-121591560:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.8112182617188 2 485.811451 969.608348 0.32204 0.00015645 -0.62788 -0.00030503 -0.30584 -0.00014858 485.8112397724113 34.019 0.19335 34.047 33.931 34.125 0.028934 13 8 2 0 0 0 0.80383 1 17913 17913 4.3292 0 1 1541600 37714 12155 25169 25656 44307 44307 0.12232861670986495 LSVMGKQKKRF 11 Unmodified _LSVMGKQKKRF_ 0 0 0 REV__nc|ENSG00000249948|Q9H227|GBA3 REV__nc|ENSG00000249948|Q9H227|GBA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.3929443359375 2 661.392282 1320.77001 NaN NaN NaN NaN NaN NaN NaN 73.17 1 72.694 72.194 73.194 -0.47588 0 0 0 0.93933 1 40040 40040 2.9952 0 1 + 37715 29975 25170 25657 44308 44308 0.12245662641748822 LSVNEPLSF 9 Unmodified _LSVNEPLSF_ 0 0 0 nc|ENSG00000173253|Q9Y5R5-3|DMRT2;ENST00000382255.7_2_9:1055783-1057270:+|nuORF;ENST00000259622.10_2_9:1056133-1057270:+|nuORF;ENSG00000173253|ENST00000358146|DMRT2 nc|ENSG00000173253|Q9Y5R5-3|DMRT2 nc|ENSG00000173253|Q9Y5R5-3|DMRT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2744140625 2 503.266207 1004.51786 0.67366 0.00033903 0.67173 0.00033806 1.3454 0.00067709 503.2661881644163 84.286 0.92021 78.111 77.662 78.582 -6.1757 184 51 5 0 0 0 0.34999 1 55224 55224 14.838 3.198 1 646990000 37716 8305 25171 25658 44309 44309 0.015783478320372524 LSVNFVPPF 9 Unmodified _LSVNFVPPF_ 0 0 0 REV__ENST00000313552.10_1_2:242665744-242665876:+|nuORF REV__ENST00000313552.10_1_2:242665744-242665876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2813110351562 2 510.28166 1018.54877 -0.67785 -0.00034589 -0.5327 -0.00027183 -1.2105 -0.00061772 510.7827584405758 19.723 0.10832 19.752 19.68 19.788 0.028355 10 7 2 0 0 0 0.41742 1 9943 9943 11.64 2.2572 1 372890 + 37717 25442 25172 25659 44310 44310 0.040235459369455384 LSVNFVPPF 9 Unmodified _LSVNFVPPF_ 0 0 0 REV__ENST00000313552.10_1_2:242665744-242665876:+|nuORF REV__ENST00000313552.10_1_2:242665744-242665876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2817077636719 2 510.28166 1018.54877 0.37638 0.00019206 -0.20082 -0.00010248 0.17556 8.9586E-05 510.28139861842993 19.947 0.21062 19.955 19.855 20.066 0.0078487 16 10 3 0 0 0 0.32871 1 10163 10163 15.847 0 1 1071500 + 37718 25442 25172 25659 44311 44311 0.040235459369455384 LSVPEVCLVL 10 Unmodified _LSVPEVCLVL_ 0 0 0 ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF ENST00000325042.2_1_7:22765745-22766153:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8773803710938 3 357.875466 1070.60457 -0.28922 -0.00010351 3.6833 0.0013182 3.3941 0.0012147 357.8768561278269 34.528 0.19017 34.336 34.25 34.44 -0.19131 14 8 2 0 0 0 0.42068 1 18062 18062 12.873 0.016656 1 2722600 37719 11808 25173 25660 44312 44312 0.07209011062241188 LSVPGWPG 8 Unmodified _LSVPGWPG_ 0 0 0 REV__ENST00000329214.12_1_17:79639883-79639991:+|nuORF REV__ENST00000329214.12_1_17:79639883-79639991:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.4300537109375 1 812.430116 811.422839 0.099617 8.0932E-05 -0.12769 -0.00010374 -0.028069 -2.2804E-05 812.4299679683774 84.588 0.22554 84.088 83.976 84.202 -0.49961 18 10 2 0 0 0 0.80143 1 46258 46258 5.7604 5.7604 1 763460 + 37720 25586 25174 25661 44313 44313 0.009584591515249485 LSVPHLAL 8 Unmodified _LSVPHLAL_ 0 0 0 REV__ENST00000343534.9_1_1:112018642-112019966:+|nuORF REV__ENST00000343534.9_1_1:112018642-112019966:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2613220214844 2 425.263271 848.511988 -0.040208 -1.7099E-05 0.41433 0.0001762 0.37412 0.0001591 425.2632671377599 76.659 0.35278 76.18 76.012 76.365 -0.47945 38 22 2 0 0 0 0.61462 1 41898 41898 24.674 3.8027 1 4236600 + 37721 25737 25175 25662 44314 44314 0.08167294111024148 LSVPIDLFKEY 11 Unmodified _LSVPIDLFKEY_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.3627319335938 2 662.363379 1322.7122 0.31308 0.00020737 -1.6593 -0.001099 -1.3462 -0.00089167 662.3623038112611 73.876 0.30817 73.876 73.713 74.021 0 31 12 3 0 0 0 0.6889 1 41086 41086 5.2969 1.7004 1 1910100 + 37722 20902 25176 25663 44315 44315 0.06375679197344652 LSVPRRQIL 9 Unmodified _LSVPRRQIL_ 0 0 0 ENST00000453676.5_3_1:246518348-246518488:-|nuORF;ENST00000455277.2_3_1:246518348-246646748:-|nuORF;ENST00000490107.5_1_1:246518348-246670376:-|nuORF ENST00000453676.5_3_1:246518348-246518488:-|nuORF ENST00000453676.5_3_1:246518348-246518488:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3453979492188 2 541.345658 1080.67676 0.78769 0.00042641 -0.34562 -0.0001871 0.44207 0.00023931 541.345396745091 48.657 0.26775 43.26 43.069 43.337 -5.3961 21 15 2 0 0 0 0.21643 1 30312 30312 16.942 0 1 16194000 37723 13560 25177 25664 44316 44316 0.139651062508392 LSVRHLSFLL 10 Unmodified _LSVRHLSFLL_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MSMS AL20221201_MKP_PDAC_01 4 592.862060546875 2 592.861141 1183.70773 NaN NaN NaN NaN NaN NaN NaN 104.48 1 98.299 97.799 98.799 -6.1757 0 0 0 0.99091 1 69964 69964 1.6526 0 1 37724 7643 25178 25665 44317 44317 0.12322259565098648 LSVSFEQVL 9 Unmodified _LSVSFEQVL_ 0 0 0 nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2823486328125 2 511.281857 1020.54916 -0.095598 -4.8877E-05 0.61642 0.00031517 0.52083 0.00026629 511.2819568633321 65.666 0.31562 65.182 65.021 65.337 -0.48428 30 13 3 0 0 0 0.18465 1 35819 35819 24.674 2.9272 1 2633700 37725 4215 25179 25666 44318 44318 0.03970920866152028 LSVSFEQVL 9 Unmodified _LSVSFEQVL_ 0 0 0 nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.281857 1020.54916 0.20981 0.00010727 -0.49977 -0.00025553 -0.28997 -0.00014825 511.28138572262225 65.106 0.30224 65.106 64.994 65.296 0 -0.037728 -0.00086453 NaN 24.674 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 961770 37726 4215 25179 25666 0.03970920866152028 LSVSRKKHI 9 Unmodified _LSVSRKKHI_ 0 0 0 chr1:152984125-152985198|116|36.16|0.0|21.79|+|0|SPRR1A,SPRR1A|1 chr1:152984125-152985198|116|36.16|0.0|21.79|+|0|SPRR1A,SPRR1A|1 chr1:152984125-152985198|116|36.16|0.0|21.79|+|0|SPRR1A,SPRR1A|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5616760253906 3 356.560981 1066.66111 1.5207 0.00054223 0.30607 0.00010913 1.8268 0.00065136 356.56116278979215 22.113 0.45876 19.378 19.122 19.581 -2.7348 59 25 3 0 0 0 0.4887 1 11941 11941 8.1555 1.5252 1 19975000 37727 63 25180 25667 44319 44319 0.1304481973379552 LSVTFVSEH 9 Unmodified _LSVTFVSEH_ 0 0 0 REV__ENSG00000105851|ENST00000496166|PIK3CG REV__ENSG00000105851|ENST00000496166|PIK3CG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7625122070312 2 509.763832 1017.51311 -0.69019 -0.00035183 -0.42304 -0.00021565 -1.1132 -0.00056749 509.76341388991204 35.876 0.23147 35.654 35.519 35.751 -0.2224 18 9 3 0 0 0 0.16226 1 18809 18809 26.884 9.9414 1 3557900 + 37728 18466 25181 25668 44320 44320 0.0050546368928507945 LSVTFVSEH 9 Unmodified _LSVTFVSEH_ 0 0 0 REV__ENSG00000105851|ENST00000496166|PIK3CG REV__ENSG00000105851|ENST00000496166|PIK3CG MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.763832 1017.51311 -0.69019 -0.00035183 -0.42304 -0.00021565 -1.1132 -0.00056749 509.76341388991204 35.876 0.23147 35.654 35.519 35.751 -0.2224 -0.044312 -0.0004057 NaN 26.884 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3557900 + 37729 18466 25181 25668 0.0050546368928507945 LSVTKVAFV 9 Unmodified _LSVTKVAFV_ 0 0 0 REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF REV__ENST00000478336.5_1_1:228271057-228284925:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.7972412109375 2 482.29731 962.580068 1.6537 0.00079756 -1.975 -0.00095253 -0.32132 -0.00015497 482.29635964811894 106.84 0.12399 100.66 100.59 100.72 -6.1757 32 24 2 0 0 0 0.21847 1 71453 71453 1.6526 0.17072 1 1721700 + 37730 27630 25182 25669 44321 44321 0.09728118971031563 LSVWGCPFF 9 Unmodified _LSVWGCPFF_ 0 0 0 REV__ENST00000589225.5_1_17:76792526-76792832:-|nuORF REV__ENST00000589225.5_1_17:76792526-76792832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7559204101562 2 528.254588 1054.49462 0.32752 0.00017302 -0.43559 -0.0002301 -0.10807 -5.7086E-05 528.2543623174777 72.11 0.52223 72.11 71.84 72.362 0 75 23 4 0 0 0 0.41742 1 40058 40058 11.64 2.2929 1 7407000 + 37731 29136 25183 25670 44322 44322 -0.03044369486292453 LSVWHGSLL 9 Unmodified _LSVWHGSLL_ 0 0 0 REV__ENST00000541206.6_1_16:88769377-88769932:-|nuORF REV__ENST00000541206.6_1_16:88769377-88769932:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2854919433594 2 506.284734 1010.55492 0.26016 0.00013171 0.3139 0.00015892 0.57406 0.00029064 506.2847415429774 67.908 0.19942 67.426 67.299 67.498 -0.48219 15 8 2 0 0 0 0.14602 1 37097 37097 28.487 4.2769 1 1302600 + 37732 28593 25184 25671 44323 44323 0.050060641684808616 LSVYEKDCY 9 Unmodified _LSVYEKDCY_ 0 0 0 REV__ENSG00000019549|ENST00000020945|SNAI2 REV__ENSG00000019549|ENST00000020945|SNAI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5050048828125 3 373.83908 1118.49541 NaN NaN NaN NaN NaN NaN NaN 76.471 1 75.992 75.492 76.492 -0.47945 0 0 0 0.82396 1 41860 41860 2.7352 0 1 + 37733 17103 25185 25672 44324 44324 -0.05909619627891516 LSVYQPLLDL 10 Unmodified _LSVYQPLLDL_ 0 0 0 REV__ENSG00000167191|ENST00000300571|GPRC5B REV__ENSG00000167191|ENST00000300571|GPRC5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5575256347656 3 387.556902 1159.64888 1.0253 0.00039736 0.26862 0.00010411 1.2939 0.00050147 387.5571416009548 22.395 0.50575 19.616 19.248 19.753 -2.7784 46 27 3 0 0 0 0.57893 1 12007 12007 7.4771 0.85361 1 7248800 + 37734 22189 25186 25673 44325 44325 0.07543738480103457 LSWEEFQPWNM 11 Unmodified _LSWEEFQPWNM_ 0 0 0 REV__ENSG00000165912|ENST00000298838|PACSIN3 REV__ENSG00000165912|ENST00000298838|PACSIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 733.8255004882812 2 733.824095 1465.63364 -0.076133 -5.5868E-05 0.64322 0.00047201 0.56709 0.00041614 733.8247173186647 54.396 0.69625 53.929 53.466 54.162 -0.46664 92 35 4 0 0 0 0.6889 1 29223 29223 5.2969 0.39987 1 47625000 + 37735 22062 25187 25674 44326 44326 -0.08055496379392935 LSWFRNGL 8 Unmodified _LSWFRNGL_ 0 0 0 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 ENSG00000130748|ENST00000253047|TMEM160 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7673950195312 2 496.769252 991.52395 NaN NaN NaN NaN NaN NaN NaN 89.656 1 89.154 88.654 89.654 -0.50171 0 0 0 0.95201 1 49015 49015 10.183 0 1 37736 4252 25188 25675 44327 44327 0.027849108542341128 LSWKHFAY 8 Unmodified _LSWKHFAY_ 0 0 0 REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.5831909179688 2 526.271627 1050.5287 NaN NaN NaN NaN NaN NaN NaN 72.71 1 72.71 72.21 73.21 0 0 0 0 0.97444 1 40483 40483 2.8892 0 1 + 37737 27286 25189 25676 44328 44328 0.005457949969695619 LSWLPFHV 8 Unmodified _LSWLPFHV_ 0 0 0 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 ENSG00000183150|ENST00000651487|GPR19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7768249511719 2 499.776545 997.538538 NaN NaN NaN NaN NaN NaN NaN 41.191 1 41.189 40.689 41.689 -0.0017929 0 0 0 0.97444 1 21999 21999 2.5775 0.27475 1 37738 9122 25190 25677 44329 44329 0.03966983002374036 LSWPVKGG 8 Unmodified _LSWPVKGG_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2394409179688 2 422.239796 842.465038 -0.10122 -4.274E-05 -0.126 -5.3204E-05 -0.22723 -9.5944E-05 422.2396502179848 51.305 0.2901 50.891 50.718 51.009 -0.41351 41 14 4 0 0 0 0.6895 1 27609 27609 18.135 0 1 15194000 + 37739 29683 25191 25678 44330 44330 0.03750434559901805 LSWQSVSI 8 Unmodified _LSWQSVSI_ 0 0 0 REV__ENST00000357992.8_1_1:205584017-205584101:-|nuORF REV__ENST00000357992.8_1_1:205584017-205584101:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2486267089844 2 460.247818 918.481082 0.0034861 1.6045E-06 0.12525 5.7644E-05 0.12873 5.9248E-05 460.24781438651723 66.304 0.50347 65.821 65.586 66.09 -0.48323 75 26 4 0 0 0 0.67481 1 36344 36344 19.439 5.9311 1 42643000 + 37740 25861 25192 25679 44331 44331 0.01858096006139931 LSWSPDGH 8 Unmodified _LSWSPDGH_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.705810546875 2 449.706317 897.398081 -1.0028 -0.00045095 -0.36039 -0.00016207 -1.3631 -0.00061301 449.7060807579921 32.428 0.30154 32.428 32.297 32.599 0 46 18 3 0 0 0 0.50586 2 16907 16907;17020 34.187 0 1 166760000 37741 1751 25193 25680 44332;44333 44332 -0.05472220721856047 LSWSPDGH 8 Unmodified _LSWSPDGH_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7064819335938 2 449.706317 897.398081 -0.25734 -0.00011573 -0.0050677 -2.279E-06 -0.2624 -0.000118 449.7065055321499 32.503 0.26 32.374 32.245 32.505 -0.12915 26 11 3 0 0 0 0.50586 1 16958 16958 34.187 0 1 5963300 37742 1751 25193 25680 44334 44334 -0.05472220721856047 LSWSPDGH 8 Unmodified _LSWSPDGH_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.706298828125 2 449.706317 897.398081 0.59172 0.0002661 -0.09133 -4.1072E-05 0.50039 0.00022503 449.70624947144995 36.386 0.58171 32.194 31.914 32.496 -4.1928 92 35 3 0 0 0 0.50586 3 21123 21123;21243;21362 34.187 0 1 284790000 37743 1751 25193 25680 44335;44336;44337 44335 -0.05472220721856047 LSWYCFCM 8 Unmodified _LSWYCFCM_ 0 0 0 REV__ENST00000356978.8_1_14:90872972-90873068:+|nuORF REV__ENST00000356978.8_1_14:90872972-90873068:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1052.244506835938 1 1052.40384 1051.39657 0.81825 0.00086113 -0.40791 -0.00042929 0.41034 0.00043184 1052.4079440579656 47.985 0.08091 47.946 47.907 47.988 -0.038643 5 3 2 0 0 0 8.7369 1 25863 25863 2.5775 0 1 1182500 + 37744 25835 25194 25681 44338 44338 -0.1270763739812537 LSWYCFCM 8 Unmodified _LSWYCFCM_ 0 0 0 REV__ENST00000356978.8_1_14:90872972-90873068:+|nuORF REV__ENST00000356978.8_1_14:90872972-90873068:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1052.40384 1051.39657 0.58895 0.00061981 -0.4852 -0.00051063 0.10374 0.00010918 1052.4039928975928 53.365 0.19579 47.561 47.515 47.711 -5.8042 -0.19282 -2.6037E-05 NaN 2.5775 12 12 2 NaN NaN NaN NaN 0 NaN NaN 0 22654000 + 37745 25835 25194 25681 -0.1270763739812537 LSWYHEADPG 10 Unmodified _LSWYHEADPG_ 0 0 0 REV__ENSG00000182327|ENST00000331264|GLTPD2 REV__ENSG00000182327|ENST00000331264|GLTPD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1767578125 3 392.176972 1173.50909 NaN NaN NaN NaN NaN NaN NaN 46.13 1 46.13 45.63 46.63 0 0 0 0 0.96981 1 25192 25192 1.9064 0.83491 1 + 37746 23261 25195 25682 44339 44339 -0.07072625804448762 LSYAEKDLLE 10 Unmodified _LSYAEKDLLE_ 0 0 0 ENSG00000104219|ENST00000262096|ZDHHC2 ENSG00000104219|ENST00000262096|ZDHHC2 ENSG00000104219|ENST00000262096|ZDHHC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.807373046875 2 590.808436 1179.60232 0.97501 0.00057604 1.0921 0.00064522 2.0671 0.0012213 590.808992074963 19.791 0.33874 17.134 16.955 17.294 -2.6564 38 21 2 0 0 0 0.64628 1 10467 10467 8.7454 0.83525 1 4134000 37747 2186 25196 25683 44340 44340 0.019702538581213958 LSYAVGHF 8 Unmodified _LSYAVGHF_ 0 0 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2303771972656 2 447.229428 892.444303 0.74624 0.00033374 -0.54704 -0.00024465 0.1992 8.9087E-05 447.22924605054965 48.316 0.29791 48.277 48.102 48.4 -0.038643 32 14 3 0 0 0 0.57408 1 26026 26026 28.173 1.2896 1 13270000 37748 6784 25197 25684 44341 44341 -0.0062215581975806344 LSYCMSWYQ 9 Unmodified _LSYCMSWYQ_ 0 0 0 ENST00000404125.5_1_2:54176316-54176406:-|nuORF ENST00000404125.5_1_2:54176316-54176406:-|nuORF ENST00000404125.5_1_2:54176316-54176406:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3115844726562 2 590.743728 1179.4729 0.66696 0.000394 1.5517 0.00091668 2.2187 0.0013107 590.744482987865 71.622 0.52722 71.661 71.407 71.934 0.039024 53 24 3 0 0 0 0.19613 1 39381 39381 7.9102 1.187 1 2635600 37749 12911 25198 25685 44342 44342 -0.10965542297140018 LSYDFSLILDV 11 Unmodified _LSYDFSLILDV_ 0 0 0 REV__ENSG00000168907|ENST00000397272|PLA2G4F REV__ENSG00000168907|ENST00000397272|PLA2G4F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.8386840820312 2 642.839736 1283.66492 0.17419 0.00011197 0.06304 4.0524E-05 0.23723 0.0001525 642.8397055920408 72.817 0.20745 72.817 72.717 72.925 0 17 10 2 0 0 0 0.6889 1 40517 40517 5.2969 0 1 691650 + 37750 22358 25199 25686 44343 44343 0.03443399926322854 LSYDRRYTTEK 11 Unmodified _LSYDRRYTTEK_ 0 0 0 REV__nc|ENSG00000173728|Q5SVJ3-2|SPMIP3 REV__nc|ENSG00000173728|Q5SVJ3-2|SPMIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.9130249023438 3 477.912407 1430.71539 0.71683 0.00034258 -0.27558 -0.0001317 0.44125 0.00021088 477.912476405394 28.975 0.20626 28.913 28.81 29.016 -0.062159 12 8 2 0 0 0 0.73114 1 14958 14958 1.3296 0 1 3065600 + 37751 22746 25200 25687 44344 44344 0.01726322304034511 LSYDVVNFE 9 Unmodified _LSYDVVNFE_ 0 0 0 DPYD|p.P237S|1|0.18|ENSG00000188641|chr1:97691770-97691770|G/A|missense_variant DPYD|p.P237S|1|0.18|ENSG00000188641|chr1:97691770-97691770|G/A|missense_variant DPYD|p.P237S|1|0.18|ENSG00000188641|chr1:97691770-97691770|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7549438476562 2 543.261122 1084.50769 1.0528 0.00057196 -1.4115 -0.00076683 -0.35869 -0.00019486 543.260007742229 100.33 0.24016 94.153 94.014 94.254 -6.1757 34 15 3 0 0 0 0.087258 1 67128 67128 36.044 5.8194 1 120180000 37752 242 25201 25688 44345 44345 -0.03118259893199138 LSYFGWLL 8 Unmodified _LSYFGWLL_ 0 0 0 REV__ENST00000373871.7_1_1:28374933-28415088:-|nuORF REV__ENST00000373871.7_1_1:28374933-28415088:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7681884765625 2 499.770929 997.527304 -0.32404 -0.00016195 -2.5527 -0.0012758 -2.8768 -0.0014377 499.76952273986944 60.719 0.34408 60.229 60.03 60.374 -0.48932 26 15 2 0 0 0 0.50586 1 33109 33109 34.187 0.084896 1 8560000 + 37753 26163 25202 25689 44346 44346 0.028441609082506147 LSYFGWLL 8 Unmodified _LSYFGWLL_ 0 0 0 REV__ENST00000373871.7_1_1:28374933-28415088:-|nuORF REV__ENST00000373871.7_1_1:28374933-28415088:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 499.770929 997.527304 -0.32404 -0.00016195 -2.5527 -0.0012758 -2.8768 -0.0014377 499.76952273986944 60.719 0.34408 60.229 60.03 60.374 -0.48932 0 0 NaN 34.187 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8560000 + 37754 26163 25202 25689 0.028441609082506147 LSYFHSLTF 9 Unmodified _LSYFHSLTF_ 0 0 0 ENST00000559537.1_1_15:81245324-81281926:-|nuORF ENST00000559537.1_1_15:81245324-81281926:-|nuORF ENST00000559537.1_1_15:81245324-81281926:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7818603515625 2 557.782025 1113.5495 0.10273 5.7299E-05 -2.5506 -0.0014227 -2.4479 -0.0013654 557.7816184896496 61.416 0.44251 60.926 60.694 61.137 -0.48932 29 20 2 0 0 0 0.23158 1 33470 33470 20.454 6.5476 1 2970900 37755 15298 25203 25690 44347 44347 -0.002736594140287707 LSYFHSLTF 9 Unmodified _LSYFHSLTF_ 0 0 0 ENST00000559537.1_1_15:81245324-81281926:-|nuORF ENST00000559537.1_1_15:81245324-81281926:-|nuORF ENST00000559537.1_1_15:81245324-81281926:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7820434570312 2 557.782025 1113.5495 1.0887 0.00060726 -1.176 -0.00065594 -0.087273 -4.8679E-05 557.7815711443596 57.832 0.16135 57.765 57.634 57.795 -0.066036 13 7 2 0 0 0 0.16226 1 31492 31492 26.884 4.1474 1 1579700 37756 15298 25203 25690 44348 44348 -0.002736594140287707 LSYFMAYYKY 10 Unmodified _LSYFMAYYKY_ 0 0 0 nc|ENSG00000132972|Q9BXT8-5|RNF17;ENSG00000132972|ENST00000255324|RNF17 nc|ENSG00000132972|Q9BXT8-5|RNF17 nc|ENSG00000132972|Q9BXT8-5|RNF17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2145385742188 3 450.214259 1347.62095 0.025894 1.1658E-05 -0.067755 -3.0504E-05 -0.041861 -1.8846E-05 450.21436382994034 65.602 0.39923 65.117 64.938 65.337 -0.48428 58 17 5 0 0 0 0.70895 1 35878 35878 1.9064 0.57673 1 8302500 37757 4475 25204 25691 44349 44349 -0.038959077716526735 LSYLEQHRN 9 Unmodified _LSYLEQHRN_ 0 0 0 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.201416015625 3 387.2 1158.57817 0.79205 0.00030668 -0.070664 -2.7361E-05 0.72139 0.00027932 387.2000048260742 27.777 0.2872 24.74 24.594 24.882 -3.0365 31 14 3 0 0 0 0.23158 1 15394 15394 24.991 4.5764 1 16563000 + 37758 29628 25205 25692 44350 44350 0.005224582151413415 LSYLEQHRN 9 Unmodified _LSYLEQHRN_ 0 0 0 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 387.2 1158.57817 -0.43131 -0.000167 1.2712 0.00049223 0.83994 0.00032522 387.20037758480225 24.687 0.23026 24.687 24.572 24.802 0 -0.026563 0.00084206 NaN 24.991 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4407600 + 37759 29628 25205 25692 0.005224582151413415 LSYLEQHRN 9 Unmodified _LSYLEQHRN_ 0 0 0 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 REV__nc|ENSG00000129933|Q9Y6X3-2|MAU2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 387.2 1158.57817 0.79205 0.00030668 -0.070664 -2.7361E-05 0.72139 0.00027932 387.2000048260742 27.777 0.2872 24.74 24.594 24.882 -3.0365 0.026563 -0.0007167 NaN 24.991 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 16563000 + 37760 29628 25205 25692 0.005224582151413415 LSYLFDEDVF 10 Unmodified _LSYLFDEDVF_ 0 0 0 ENST00000371086.3_1_1:64014755-64014992:+|nuORF ENST00000371086.3_1_1:64014755-64014992:+|nuORF ENST00000371086.3_1_1:64014755-64014992:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.2952270507812 2 624.295162 1246.57577 0.50655 0.00031624 1.4505 0.00090557 1.9571 0.0012218 624.2959459284718 72.306 0.40833 71.83 71.572 71.98 -0.47609 40 18 3 0 0 0 0.6606 1 39612 39612 7.2892 1.5574 1 1332500 37761 12352 25206 25693 44351 44351 -0.037654350332104514 LSYLGNTYHD 10 Unmodified _LSYLGNTYHD_ 0 0 0 REV__ENSG00000106560|ENST00000223293|GIMAP2 REV__ENSG00000106560|ENST00000223293|GIMAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.777587890625 2 591.774928 1181.5353 -0.54625 -0.00032326 0.025763 1.5246E-05 -0.52049 -0.00030801 591.7759228001703 34.862 0.63077 34.862 34.695 35.326 0 72 30 5 0 0 0 0.64628 1 18483 18483 8.7454 0 1 27813000 + 37762 18515 25207 25694 44352 44352 -0.048203566329675596 LSYLGSSQLV 10 Unmodified _LSYLGSSQLV_ 0 0 0 REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF REV__ENST00000390555.3_1_14:106135325-106136152:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7982788085938 2 533.792589 1065.57063 0.39951 0.00021326 4.1833 0.002233 4.5828 0.0024463 533.798393834452 48.268 0.27866 48.229 48.047 48.326 -0.038643 25 13 3 0 0 0 0.46514 1 26044 26044 18.146 1.2041 1 2017300 + + 37763 16828 25208 25695 44353 44353 0.04046305894848956 LSYLSTMSSL 10 Unmodified _LSYLSTMSSL_ 0 0 0 ENSG00000127585|ENST00000397621|FBXL16;nc|ENSG00000127585|Q8N461-2|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2810668945312 2 551.278457 1100.54236 0.94165 0.00051911 1.7068 0.00094092 2.6484 0.00146 551.2794176793434 99.285 0.12648 93.109 93.048 93.174 -6.1757 13 7 2 0 0 0 0.44373 1 66089 66089 19.257 1.122 1 30444000 37764 4020 25209 25696 44354 44354 -0.0038876007672570267 LSYQGLKDF 9 Unmodified _LSYQGLKDF_ 0 0 0 REV__nc|ENSG00000172766|Q6N069-4|NAA16 REV__nc|ENSG00000172766|Q6N069-4|NAA16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7822875976562 2 535.779482 1069.54441 0.55654 0.00029818 1.5161 0.0008123 2.0726 0.0011105 535.7800300874416 82.336 0.42609 81.84 81.629 82.055 -0.4952 47 17 4 0 0 0 0.41742 1 45138 45138 11.64 3.047 1 6558700 + 37765 22672 25210 25697 44355 44355 0.0124203672337444 LSYQSYYSI 9 Unmodified _LSYQSYYSI_ 0 0 0 REV__ENSG00000145721|ENST00000274382|LIX1 REV__ENSG00000145721|ENST00000274382|LIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2674560546875 2 562.268947 1122.52334 0.33575 0.00018878 0.47952 0.00026962 0.81527 0.0004584 562.268889571219 83.399 0.3242 83.399 83.219 83.543 0 35 15 3 0 0 0 0.49272 1 46217 46217 7.9102 0 1 762680 + 37766 20786 25211 25698 44356 44356 -0.033019733761420866 LSYRLFICL 9 Carbamidomethyl (C) _LSYRLFIC(Carbamidomethyl (C))L_ LSYRLFIC(1)L LSYRLFIC(46)L 0 1 0 ENSG00000188372|ENST00000394857|ZP3;nc|ENSG00000188372|P21754-2|ZP3 ENSG00000188372|ENST00000394857|ZP3 ENSG00000188372|ENST00000394857|ZP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8306274414062 2 592.828452 1183.64235 1.6691 0.0009895 1.0337 0.00061283 2.7028 0.0016023 592.8296770463261 93.315 0.26058 93.338 93.187 93.448 0.022987 26 9 3 0 0 0 0.047788 1 51878 51878 45.7 18.816 1 5079800 37767 9654 25212 25699 44357 44357 886 0.05787522047694438 LSYTGPELQM 10 Unmodified _LSYTGPELQM_ 0 0 0 REV__ENSG00000204710|ENST00000377185|SPDYC REV__ENSG00000204710|ENST00000377185|SPDYC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.77783203125 2 569.776082 1137.53761 -0.10398 -5.9243E-05 3.6406 0.0020744 3.5367 0.0020151 569.7774964235579 45.016 0.20751 45.016 44.925 45.132 0 15 10 2 0 0 0 0.27276 1 24540 24540 29.082 2.1979 1 5565800 + 37768 24198 25213 25700 44358 44358 -0.025656442194986084 LSYVLGMQPP 10 Unmodified _LSYVLGMQPP_ 0 0 0 ENST00000502767.1_1_1:150136474-150136731:+|nuORF ENST00000502767.1_1_1:150136474-150136731:+|nuORF ENST00000502767.1_1_1:150136474-150136731:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8099975585938 2 552.791535 1103.56852 0.38779 0.00021437 -3.6545 -0.0020202 -3.2667 -0.0018058 552.7892373543575 63.026 0.20139 63.005 62.908 63.109 -0.021614 13 9 2 0 0 0 0.21783 1 34522 34522 24.021 5.8742 1 1670500 37769 14458 25214 25701 44359 44359 0.020875538853943 LSYVLGMQPP 10 Unmodified _LSYVLGMQPP_ 0 0 0 ENST00000502767.1_1_1:150136474-150136731:+|nuORF ENST00000502767.1_1_1:150136474-150136731:+|nuORF ENST00000502767.1_1_1:150136474-150136731:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 552.791535 1103.56852 0.42586 0.00023541 -2.8563 -0.0015789 -2.4304 -0.0013435 552.789925496165 63.466 0.19908 62.98 62.816 63.016 -0.48617 -0.012495 0.00057866 NaN 18.146 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 560470 37770 14458 25214 25701 0.020875538853943 LTACSLVLLGH 11 Unmodified _LTACSLVLLGH_ 0 0 0 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2139892578125 3 376.214482 1125.62162 0.20808 7.8282E-05 -2.4571 -0.00092438 -2.249 -0.0008461 376.2137603539375 55.135 0.31522 55.066 54.823 55.138 -0.068737 25 15 2 0 0 0 0.71618 1 29960 29960 1.1098 0 1 21011000 37771 4168;16184;15680 25215 25702 44360 44360 0.06382931668031233 LTADQKLEL 9 Unmodified _LTADQKLEL_ 0 0 0 ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 ENSG00000103021|ENST00000219299|CCDC113 MSMS AL20221201_MKP_PDAC_01 4 515.7925415039062 2 515.792589 1029.57063 NaN NaN NaN NaN NaN NaN NaN 51.808 1 46.073 45.573 46.573 -5.7345 0 0 0 0.17247 1 32630 32630 34.102 5.6156 1 37772 2092 25216 25703 44361 44361 0.057023058948516336 LTADRRRQPL 10 Unmodified _LTADRRRQPL_ 0 0 0 ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL ENSG00000255690|ENST00000539664|TRIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2432556152344 3 409.242311 1224.7051 1.291 0.00052834 0.20337 8.3229E-05 1.4944 0.00061157 409.24251575279726 20.689 0.32802 17.996 17.82 18.148 -2.693 52 21 3 0 0 0 0.65471 2 10975 10975;11081 7.9454 1.711 1 6811400 37773 10794 25217 25704 44362;44363 44362 0.10173804160149302 LTAIYLLILY 10 Unmodified _LTAIYLLILY_ 0 0 0 REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF REV__ENST00000468349.1_1_21:34962215-34963578:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2516784667969 3 399.249409 1194.7264 NaN NaN NaN NaN NaN NaN NaN 34.67 1 34.697 34.197 35.197 0.027401 0 0 0 0.98857 1 18289 18289 1.9064 0.57673 1 + 37774 27449 25218 25705 44364 44364 0.13682376416295483 LTAKKLLLL 9 Unmodified _LTAKKLLLL_ 0 0 0 nc|ENSG00000095066|Q96ED9-2|HOOK2;ENSG00000095066|ENST00000397668|HOOK2 nc|ENSG00000095066|Q96ED9-2|HOOK2 nc|ENSG00000095066|Q96ED9-2|HOOK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.8623352050781 2 506.860078 1011.7056 NaN NaN NaN NaN NaN NaN NaN 49.832 1 49.44 48.94 49.94 -0.3923 0 0 0 0.85798 1 26811 26811 0.52476 0.066424 1 37775 1644 25219 25706 44365 44365 0.20021830827283793 LTANASRSTFL 11 Unmodified _LTANASRSTFL_ 0 0 0 ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2 ENST00000558588.5_1_15:40583969-40599873:-|nuORF ENST00000558588.5_1_15:40583969-40599873:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8173217773438 2 590.81967 1179.62479 1.0258 0.00060606 2.0674 0.0012214 3.0932 0.0018275 590.8209333925438 94.039 0.92574 87.863 87.555 88.481 -6.1757 164 53 4 0 0 0 0.48742 1 62366 62366 11.495 0 1 342760000 37776 4980 25220 25707 44366 44366 0.04215898046413713 LTAQRMKFG 9 Unmodified _LTAQRMKFG_ 0 0 0 REV__ENST00000294353.6_1_1:53287865-53288042:+|nuORF REV__ENST00000294353.6_1_1:53287865-53288042:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1951904296875 3 351.195421 1050.56443 NaN NaN NaN NaN NaN NaN NaN 33.627 1 33.656 33.156 34.156 0.028934 0 0 0 0.83049 1 17698 17698 2.2828 0.5405 1 + 37777 25253 25221 25708 44367 44367 0.04117509182333379 LTAREHLQL 9 Unmodified _LTAREHLQL_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000463603.5_1_9:139903820-139904575:-|nuORF nc|ENSG00000107331|Q9BZC7|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.81201171875 2 540.811648 1079.60874 0.46172 0.00024971 -0.11786 -6.3742E-05 0.34386 0.00018596 540.8115129991537 40.651 0.28797 40.348 40.214 40.502 -0.30304 33 13 3 0 0 0 0.03568 1 21487 21487 52.268 4.5197 1 6685800 37778 2490 25222 25709 44368 44368 0.07212236600184951 LTASFEKATA 10 Unmodified _LTASFEKATA_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2784423828125 2 519.776939 1037.53933 0.67894 0.0003529 -1.446 -0.00075162 -0.76711 -0.00039873 520.2773514607861 100.57 0.15878 94.399 94.33 94.488 -6.1757 27 10 4 0 0 0 0.20962 1 67329 67329 32.786 0.4802 1 118240000 37779 2375 25223 25710 44369 44369 0.022057328607616 LTASNPFCSFL 11 Unmodified _LTASNPFCSFL_ 0 0 0 REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5299377441406 3 400.530358 1198.56925 0.84008 0.00033648 -1.7271 -0.00069177 -0.88705 -0.00035529 400.5296980851242 49.913 0.27603 49.52 49.374 49.65 -0.3923 39 13 4 0 0 0 0.65108 1 26831 26831 4.4062 0 1 7298100 + 37780 29645 25224 25711 44370 44370 -0.022096514655459032 LTATGLRSAS 10 Unmodified _LTATGLRSAS_ 0 0 0 ENST00000508385.5_1_4:2800942-2822352:+|nuORF ENST00000508385.5_1_4:2800942-2822352:+|nuORF ENST00000508385.5_1_4:2800942-2822352:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.7770080566406 2 488.774731 975.534909 NaN NaN NaN NaN NaN NaN NaN 40.727 1 36.198 35.698 36.698 -4.5294 0 0 0 0.025913 1 24359 24359 86.332 10.571 1 37781 14557 25225 25712 44371 44371 0.046162684378600716 LTATYAFEL 9 Unmodified _LTATYAFEL_ 0 0 0 REV__ENSG00000160685|ENST00000535420|ZBTB7B REV__ENSG00000160685|ENST00000535420|ZBTB7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7726440429688 2 514.768583 1027.52261 4.4977 0.0023153 1.6201 0.00083399 6.1178 0.0031493 514.7693631730851 99.045 0.24574 99.017 98.891 99.137 -0.028282 26 8 4 0 0 0 0.10734 1 55002 55002 32.305 5.4218 1 30501000 + 37782 21556 25226 25713 44372 44372 0.009952319747981164 LTAWAEHWRN 10 Unmodified _LTAWAEHWRN_ 0 0 0 REV__ENSG00000177943|ENST00000317446|MAMDC4 REV__ENSG00000177943|ENST00000317446|MAMDC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.317138671875 2 642.317628 1282.6207 NaN NaN NaN NaN NaN NaN NaN 54.906 1 54.434 53.934 54.934 -0.47211 0 0 0 0.85122 1 29770 29770 10.074 4.777 1 + 37783 23010 25227 25714 44373 44373 -0.009301466566284944 LTAWAEHWRN 10 Unmodified _LTAWAEHWRN_ 0 0 0 REV__ENSG00000177943|ENST00000317446|MAMDC4 REV__ENSG00000177943|ENST00000317446|MAMDC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.317138671875 2 642.317628 1282.6207 -0.075719 -4.8636E-05 -0.14006 -8.996E-05 -0.21578 -0.0001386 642.317980188903 54.843 0.15899 54.377 54.281 54.44 -0.46664 16 7 3 0 0 0 0.23325 1 29770 29770 10.074 4.777 1 2350100 + 37784 23010 25227 25714 44374 44374 -0.009301466566284944 LTAWLLDGDPL 11 Unmodified _LTAWLLDGDPL_ 0 0 0 REV__ENST00000500447.1_1_11:567036-567441:-|nuORF REV__ENST00000500447.1_1_11:567036-567441:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2130126953125 3 405.22029 1212.63904 1.0449 0.00042342 0.6329 0.00025646 1.6778 0.00067989 405.5550711992774 46.842 0.18563 46.808 46.712 46.898 -0.033417 13 8 2 0 0 0 0.63851 1 25167 25167 4.7159 0 1 1217200 + 37785 28007 25228 25715 44375 44375 0.0412255047472172 LTAYLAVPR 9 Unmodified _LTAYLAVPR_ 0 0 0 ENST00000417983.5_1_9:94903864-94910221:+|nuORF;ENST00000438322.1_1_9:94903888-94907174:+|nuORF ENST00000417983.5_1_9:94903864-94910221:+|nuORF ENST00000417983.5_1_9:94903864-94910221:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.1716918945312 2 502.300384 1002.58622 NaN NaN NaN NaN NaN NaN NaN 51.406 1 50.993 50.493 51.493 -0.41351 0 0 0 0.29524 1 27715 27715 25.399 10.561 1 37786 13061 25229 25716 44376 44376 0.08502637202570895 LTCCCFCCCC 10 Unmodified _LTCCCFCCCC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.7669982910156 3 367.765614 1100.27501 NaN NaN NaN NaN NaN NaN NaN 10.668 1 10.668 10.168 11.168 0 0 0 0 1.0061 1 5062 5062 0 0 1 37787 7067 25230 25717 44377 44377 -0.271114104104754 LTCCCFCCCC 10 Unmodified _LTCCCFCCCC_ 0 0 0 ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G ENSG00000163793|ENST00000296097|DNAJC5G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.0915222167969 3 367.765614 1100.27501 NaN NaN NaN NaN NaN NaN NaN 1.3673 1 1.3466 0.84665 1.8466 -0.020623 0 0 0 1.0061 1 710 710 0 0 1 37788 7067 25230 25717 44378 44378 -0.271114104104754 LTCGTCTDTI 10 Unmodified _LTCGTCTDTI_ 0 0 0 REV__ENSG00000188641|ENST00000370192|DPYD REV__ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.72607421875 2 514.225368 1026.43618 0.5331 0.00027414 -1.5108 -0.00077687 -0.97766 -0.00050274 514.7264171370003 74.155 0.63131 74.155 73.663 74.294 0 71 28 4 0 0 0 0.69064 1 41284 41284 3.9444 0 1 1528000 + 37789 23721 25231 25718 44379 44379 -0.0759783891371626 LTCNSDGEW 9 Unmodified _LTCNSDGEW_ 0 0 0 ENSG00000123838|ENST00000367070|C4BPA ENSG00000123838|ENST00000367070|C4BPA ENSG00000123838|ENST00000367070|C4BPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1023.968872070312 1 1024.40404 1023.39676 0.83022 0.00085048 -3.1244 -0.0032007 -2.2942 -0.0023502 1025.4085227233438 43.272 0.10239 43.256 43.164 43.266 -0.015667 6 4 2 0 0 0 0.19205 1 23152 23152 10.074 0.6908 1 3246100 37790 3732 25232 25719 44380 44380 -0.11400222872930499 LTDAIKGA 8 Unmodified _LTDAIKGA_ 0 0 0 nc|ENSG00000167216|Q8IYT4-2|KATNAL2;ENSG00000167216|ENST00000683218|KATNAL2 nc|ENSG00000167216|Q8IYT4-2|KATNAL2 nc|ENSG00000167216|Q8IYT4-2|KATNAL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2011108398438 2 394.729261 787.443968 -0.37971 -0.00014988 -0.51956 -0.00020508 -0.89927 -0.00035497 394.7291410238137 22.656 0.29022 22.656 22.444 22.734 0 16 13 2 0 0 0 8.7369 1 11460 11460 8.5933 3.3626 1 498480 37791 7589 25233 25720 44381 44381 0.041744244603819425 LTDFVLGRTPF 11 Unmodified _LTDFVLGRTPF_ 0 0 0 REV__nc|ENSG00000076685|P49902-2|NT5C2 REV__nc|ENSG00000076685|P49902-2|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3470458984375 2 633.348063 1264.68157 0.34065 0.00021575 -1.6908 -0.0010709 -1.3502 -0.00085514 633.3471399192933 93.544 0.12915 87.368 87.303 87.432 -6.1757 12 7 2 0 0 0 0.42108 1 61948 61948 20.415 1.1575 1 10614000 + 37792 17594 25234 25721 44382 44382 0.05981945602934502 LTDKIDVLL 9 Unmodified _LTDKIDVLL_ 0 0 0 ENSG00000108848|ENST00000505658|LUC7L3;ENST00000508482.5_1_17:48797176-48828101:+|nuORF ENSG00000108848|ENST00000505658|LUC7L3 ENSG00000108848|ENST00000505658|LUC7L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3140258789062 2 515.313158 1028.61176 0.42647 0.00021977 -0.27158 -0.00013995 0.15489 7.9819E-05 515.3130212669554 67.495 0.34497 67.495 67.294 67.639 0 39 15 3 0 0 0 0.094149 1 37591 37591 34.402 1.616 1 6557900 37793 2614 25235 25722 44383 44383 0.098600669343341 LTDLAVIETL 10 Unmodified _LTDLAVIETL_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.8088989257812 2 544.315897 1086.61724 0.21876 0.00011907 -1.2708 -0.00069169 -1.052 -0.00057262 544.3147940234628 92.996 0.29001 86.82 86.626 86.916 -6.1757 29 18 2 0 0 0 0.17211 1 61415 61415 36.127 17.754 1 13680000 37794 9023 25236 25723 44384 44384 0.07739745726144065 LTDMTLLHY 9 Unmodified _LTDMTLLHY_ 0 0 0 nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4;ENST00000491701.1_1_2:29355008-29355161:+|nuORF;ENSG00000105270|ENST00000360535|CLIP3 nc|ENSG00000115295|Q8N3C7-3|CLIP4;ENSG00000105270|ENST00000360535|CLIP3 nc|ENSG00000115295|Q8N3C7-3|CLIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7797241210938 2 553.781167 1105.54778 0.78312 0.00043367 -1.2136 -0.00067208 -0.43051 -0.00023841 553.7808577313799 72.313 0.87983 71.837 71.415 72.294 -0.47609 108 39 4 0 0 0 0.30562 1 39716 39716 16.942 0 1 12772000 37795 3106;2296 25237 25724 44385 44385 -0.0007703649425820913 LTEDGCVYTF 10 Unmodified _LTEDGCVYTF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7891845703125 2 574.25244 1146.49033 0.61834 0.00035508 -3.2097 -0.0018432 -2.5914 -0.0014881 574.250555487226 48.305 0.22784 47.934 47.812 48.039 -0.37172 18 11 2 0 0 0 0.22811 1 25923 25923 14.838 2.3067 1 4162300 37796 313 25238 25725 44386 44386 -0.07705923490516398 LTEDTLQGAP 10 Unmodified _LTEDTLQGAP_ 0 0 0 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.23974609375 2 522.764029 1043.5135 0.43141 0.00022553 3.7798 0.001976 4.2113 0.0022015 522.7660020708742 76.191 0.31395 76.191 76.105 76.419 0 15 12 2 0 0 0 0.23693 1 42344 42344 6.2058 0.97511 1 1761900 37797 10772 25239 25726 44387 44387 -0.006511613815291639 LTEEIAAKF 9 Unmodified _LTEEIAAKF_ 0 0 0 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2818603515625 2 511.281857 1020.54916 1.2269 0.00062727 0.54075 0.00027648 1.7676 0.00090375 511.2817346225252 46.344 0.22795 46.31 46.224 46.452 -0.033417 18 10 2 0 0 0 0.2001 1 24927 24927 23.148 1.4018 1 4839600 + 37798 22628 25240 25727 44388 44388 0.039709208661292905 LTEELIGFIL 10 Unmodified _LTEELIGFIL_ 0 0 0 REV__ENST00000466526.1_1_1:160147295-160152563:+|nuORF REV__ENST00000466526.1_1_1:160147295-160152563:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.33642578125 2 574.33409 1146.65363 NaN NaN NaN NaN NaN NaN NaN 70.13 1 63.954 63.454 64.454 -6.1757 0 0 0 0.57388 1 45816 45816 26.884 7.6267 1 + 37799 19873 25241 25728 44389 44389 0.08616622622866998 LTEEWFLLF 9 Unmodified _LTEEWFLLF_ 0 0 0 REV__ENST00000550746.5_1_12:72316987-72317041:+|nuORF REV__ENST00000550746.5_1_12:72316987-72317041:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3111572265625 2 599.313158 1196.61176 0.27033 0.00016201 -3.8894 -0.002331 -3.6191 -0.002169 599.3103094424116 78.893 0.33992 78.407 78.213 78.553 -0.48596 22 13 2 0 0 0 0.2001 1 43230 43230 23.148 1.6114 1 1225100 + 37800 28708 25242 25729 44390 44390 0.021320669343367626 LTEGVREGKPF 11 Unmodified _LTEGVREGKPF_ 0 0 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000545608.5_2_11:113688400-113704155:-|nuORF;ENST00000540438.5_1_11:113691037-113702685:-|nuORF;nc|ENSG00000048028|Q96RU2-3|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8334350585938 2 616.83532 1231.65609 0.67434 0.00041595 -2.3327 -0.0014389 -1.6583 -0.0010229 616.8339085592706 100.82 0.18497 100.77 100.68 100.87 -0.04216 14 6 4 0 0 0 0.37677 1 56012 56012 22.736 2.3217 1 8173900 37801 696 25243 25730 44391 44391 0.04952471080491705 LTEHGKWWE 9 Unmodified _LTEHGKWWE_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2894897460938 2 593.288005 1184.56146 0.98934 0.00058697 -0.57467 -0.00034094 0.41467 0.00024602 593.2875093225247 47.854 0.6758 42.62 42.212 42.888 -5.2339 98 40 3 0 0 0 0.30562 1 29619 29619 16.942 3.0362 1 56994000 + 37802 21226 25244 25731 44392 44392 -0.023440426708248197 LTEHKVLF 8 Unmodified _LTEHKVLF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2904357910156 2 493.78711 985.559667 1.4793 0.00073046 0.61264 0.00030251 2.0919 0.001033 493.78717699038174 58.84 0.4985 52.766 52.475 52.973 -6.0745 69 27 3 0 0 0 0.57045 1 37578 37578 28.487 0 1 38271000 37803 1776 25245 25732 44393 44393 0.06630948311237717 LTEHLHRLY 9 Unmodified _LTEHLHRLY_ 0 0 0 ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000477803.5_1_14:74764631-74769615:-|nuORF ENST00000553745.5_1_14:74753379-74769587:-|nuORF ENST00000553745.5_1_14:74753379-74769587:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.324951171875 2 591.324922 1180.63529 NaN NaN NaN NaN NaN NaN NaN 102.6 1 102.49 101.99 102.99 -0.10789 0 0 0 0.85798 1 55976 55976 0.52476 0 1 37804 3457 25246 25733 44394 44394 0.052199254915194615 LTEIHNFH 8 Unmodified _LTEIHNFH_ 0 0 0 REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7570190429688 2 505.756341 1009.49813 -0.068694 -3.4743E-05 1.7039 0.00086178 1.6352 0.00082704 505.7572167140208 99.901 0.11662 99.743 99.669 99.785 -0.1575 8 3 3 0 0 0 0.75262 1 54554 54554 12.532 0.89125 1 4842600 + 37805 30082 25247 25734 44395 44395 -0.006239833880499646 LTEIHNFH 8 Unmodified _LTEIHNFH_ 0 0 0 REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.756341 1009.49813 0.45288 0.00022905 2.9736 0.0015039 3.4265 0.001733 505.7578009212076 99.792 0.10584 99.792 99.728 99.834 0 0.024625 0.00079922 NaN 12.532 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1522700 + 37806 30082 25247 25734 -0.006239833880499646 LTEIHNFH 8 Unmodified _LTEIHNFH_ 0 0 0 REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant REV__PXDN|p.Q145H|1|0.42|ENSG00000130508|chr2:1684133-1684133|C/G|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 505.756341 1009.49813 -0.068694 -3.4743E-05 1.7039 0.00086178 1.6352 0.00082704 505.7572167140208 99.901 0.11662 99.743 99.669 99.785 -0.1575 -0.024625 -0.00048504 NaN 12.532 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 4842600 + 37807 30082 25247 25734 -0.006239833880499646 LTEKKIKKTV 10 Unmodified _LTEKKIKKTV_ 0 0 0 ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.3910522460938 2 594.389731 1186.76491 1.2538 0.00074525 -0.30412 -0.00018076 0.94969 0.00056449 594.3902715798976 103.78 0.11726 97.608 97.547 97.664 -6.1757 48 25 3 0 0 0 0.72292 1 69541 69541 0.35063 0.043601 1 7824100 37808 13663 25248 25735 44396 44396 0.1789968205077912 LTELLFPYI 9 Unmodified _LTELLFPYI_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 nc|ENSG00000135317|Q9Y5W7-2|SNX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.5496826171875 3 370.214476 1107.6216 0.79132 0.00029296 -1.4318 -0.00053007 -0.64046 -0.00023711 370.2131948346471 41.411 0.76521 36.803 36.528 37.294 -4.6079 197 49 5 0 0 0 0.48152 1 24986 24986 5.2969 0 1 1101600000 37809 4688 25249 25736 44397 44397 0.0720925493969844 LTELRTTQ 8 Unmodified _LTELRTTQ_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 962.5255126953125 1 961.531286 960.52401 1.1838 0.0011383 -2.0034 -0.0019263 -0.81961 -0.00078808 961.5347274751325 100.78 0.094025 94.607 94.541 94.635 -6.1757 17 6 3 0 0 0 0.58902 1 67457 67457 26.884 3.7352 1 34418000 37810 6097 25250 25737 44398 44398 0.04216866063552516 LTELRVDNQ 9 Unmodified _LTELRVDNQ_ 0 0 0 nc|ENSG00000163157|Q9NZQ9-2|TMOD4;ENSG00000163157|ENST00000295314|TMOD4 nc|ENSG00000163157|Q9NZQ9-2|TMOD4 nc|ENSG00000163157|Q9NZQ9-2|TMOD4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.7901000976562 2 544.290745 1086.56694 1.0423 0.00056734 0.56456 0.00030728 1.6069 0.00087462 544.7927092121016 91.942 0.53306 85.766 85.55 86.083 -6.1757 42 31 2 0 0 0 0.094631 1 60916 60916 32.305 0 1 10258000 37811 6960 25251 25738 44399 44399 0.027116361209891693 LTELRWRL 8 Unmodified _LTELRWRL_ 0 0 0 ENST00000330836.9_1_14:94546084-94547494:-|nuORF ENST00000330836.9_1_14:94546084-94547494:-|nuORF ENST00000330836.9_1_14:94546084-94547494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7279052734375 2 543.824558 1085.63456 0.1793 9.7507E-05 -1.1322 -0.00061571 -0.95289 -0.0005182 543.8239233909669 64.275 0.40232 64.275 64.071 64.473 0 41 17 3 0 0 0 0.79669 1 35784 35784 8.5933 1.304 1 5741900 37812 11853 25252 25739 44400 44400 0.09517130842459665 LTEMWYWIFLW 11 Unmodified _LTEMWYWIFLW_ 0 0 0 ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 794.3917846679688 2 794.388874 1586.76319 0.058366 4.6365E-05 1.8745 0.0014891 1.9329 0.0015355 794.390275504527 30.834 0.22315 30.732 30.641 30.864 -0.10269 14 8 2 0 0 0 0.74157 1 16034 16034 0.35063 0.043601 1 1780000 37813 10356 25253 25740 44401 44401 -0.00671695029473085 LTEMWYWIFLW 11 Unmodified _LTEMWYWIFLW_ 0 0 0 ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B ENSG00000205269|ENST00000379426|TMEM170B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 794.390625 2 794.388874 1586.76319 0.070979 5.6385E-05 2.0814 0.0016534 2.1523 0.0017098 794.3902161559249 30.696 0.24202 30.726 30.541 30.783 0.030106 17 10 3 0 0 0 0.74157 1 16062 16062 0.35063 0.043601 1 1685900 37814 10356 25253 25740 44402 44402 -0.00671695029473085 LTEYNSTMER 10 Unmodified _LTEYNSTMER_ 0 0 0 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 ENSG00000165730|ENST00000298596|STOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.1914672851562 3 415.192294 1242.55505 -0.39362 -0.00016343 -1.0316 -0.00042829 -1.4252 -0.00059172 415.1916867182569 22.991 0.13294 22.991 22.903 23.036 0 10 6 2 0 0 0 0.71413 1 11720 11720 0.56317 0.10865 1 493430 37815 7381 25254 25741 44403 44403 -0.056523486845208026 LTFLYATNPG 10 Unmodified _LTFLYATNPG_ 0 0 0 ENST00000282928.4_1_3:147127486-147127543:+|nuORF ENST00000282928.4_1_3:147127486-147127543:+|nuORF ENST00000282928.4_1_3:147127486-147127543:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.78759765625 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 83.066 1 83.066 82.566 83.566 0 0 0 0 0.76313 1 46072 46072 13.906 0.39817 1 37816 11422 25255 25742 44404 44404 0.016103232404248047 LTFPICAMEL 10 Unmodified _LTFPICAMEL_ 0 0 0 ENST00000473361.5_1_1:32259103-32263870:-|nuORF ENST00000473361.5_1_1:32259103-32263870:-|nuORF ENST00000473361.5_1_1:32259103-32263870:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.8621215820312 3 379.860939 1136.56099 NaN NaN NaN NaN NaN NaN NaN 23.575 1 20.748 20.248 21.248 -2.8273 0 0 0 0.96981 1 12767 12767 1.9064 0 1 37817 13921 25256 25743 44405 44405 -0.001829217065278499 LTFQNGDLYL 10 Unmodified _LTFQNGDLYL_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2;REV__ENSG00000187122|ENST00000266058|SLIT1 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3035888671875 2 592.303321 1182.59209 0.65483 0.00038786 -0.31 -0.00018361 0.34483 0.00020425 592.3037350732657 82.341 0.24632 81.846 81.72 81.966 -0.4952 13 9 2 0 0 0 0.62068 1 45084 45084 10.074 1.4806 1 589270 + 37818 20755;23623 25257 25744 44406 44406 0.008096909235973726 LTFTGRYFQQL 11 Unmodified _LTFTGRYFQQL_ 0 0 0 REV__ENST00000507073.1_1_5:74848359-74865166:+|nuORF REV__ENST00000507073.1_1_5:74848359-74865166:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.21142578125 3 458.578588 1372.71394 -0.38071 -0.00017458 1.1857 0.00054372 0.80496 0.00036914 458.5787886058836 34.232 0.2874 34.041 33.843 34.13 -0.19131 18 10 3 0 0 0 0.30303 1 17837 17837 5.4027 4.2094 1 962820 + 37819 28096 25258 25745 44407 44407 0.04248733005942995 LTFWILGLS 9 Unmodified _LTFWILGLS_ 0 0 0 REV__ENSG00000124786|ENST00000644923|SLC35B3 REV__ENSG00000124786|ENST00000644923|SLC35B3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.8070068359375 2 525.305136 1048.59572 0.56336 0.00029594 0.23515 0.00012352 0.79851 0.00041946 525.3052242072445 66.749 0.53956 60.574 60.332 60.872 -6.1757 43 30 2 0 0 0 0.17275 1 43556 43556 10.824 4.6181 1 18147000 + 37820 19471 25259 25746 44408 44408 0.07336405488103992 LTFWYLDTDP 10 Unmodified _LTFWYLDTDP_ 0 0 0 REV__ENSG00000128285|ENST00000249016|MCHR1 REV__ENSG00000128285|ENST00000249016|MCHR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2074279785156 3 424.204528 1269.59175 NaN NaN NaN NaN NaN NaN NaN 18.48 1 18.48 17.98 18.98 0 0 0 0 0.99248 1 9191 9191 0.62683 0.35781 1 + 37821 19605 25260 25747 44409 44409 -0.032257287963147974 LTFYLWFLF 9 Unmodified _LTFYLWFLF_ 0 0 0 ENST00000463422.5_1_2:85981774-86000028:+|nuORF;nc|ENSG00000168874|Q96SQ7-2|ATOH8 ENST00000463422.5_1_2:85981774-86000028:+|nuORF ENST00000463422.5_1_2:85981774-86000028:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3364868164062 2 625.336436 1248.65832 0.65824 0.00041162 -1.7927 -0.0011211 -1.1345 -0.00070944 625.3358428492596 102.14 0.085617 95.964 95.918 96.003 -6.1757 11 3 4 0 0 0 0.06187 1 68555 68555 42.095 0 1 25622000 37822 13692 25261 25748 44410 44410 0.043935515562452565 LTGDSTMRY 9 Unmodified _LTGDSTMRY_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2465209960938 2 522.244949 1042.47534 1.0046 0.00052465 1.1832 0.00061794 2.1878 0.0011426 522.2455856217372 40.665 0.31913 36.136 35.971 36.29 -4.5294 35 19 2 0 0 0 0.30562 1 24404 24404 16.942 0 1 16286000 + 37823 20626 25262 25749 44411 44411 -0.044193705678253536 LTGETPAYEL 10 Unmodified _LTGETPAYEL_ 0 0 0 REV__SPARCL1|p.L134Tfs*6|1|0.17|ENSG00000152583|chr4:87494400-87494401|-/T|frameshift_variant REV__SPARCL1|p.L134Tfs*6|1|0.17|ENSG00000152583|chr4:87494400-87494401|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1857299804688 3 365.185245 1092.53391 -0.20589 -7.5187E-05 1.2652 0.00046203 1.0593 0.00038685 365.1856589929947 32.563 0.47715 32.434 32.149 32.626 -0.12915 34 20 2 0 0 0 0.63089 1 17014 17014 9.544 2.8208 1 2694900 + 37824 21127 25263 25750 44412 44412 -0.008659907217179352 LTGIVDDVPM 10 Unmodified _LTGIVDDVPM_ 0 0 0 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2741088867188 2 530.273175 1058.5318 1.0275 0.00054485 -0.26491 -0.00014048 0.76258 0.00040437 530.2733342258654 85.962 0.37544 79.786 79.581 79.957 -6.1757 36 20 2 0 0 0 0.18021 1 56728 56728 36.127 5.4905 1 19215000 + 37825 20451 25264 25751 44413 44413 0.004872572688327637 LTGKNWIEI 9 Unmodified _LTGKNWIEI_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MSMS AL20221201_MKP_PDAC_01 4 537.3059692382812 2 537.303124 1072.5917 NaN NaN NaN NaN NaN NaN NaN 78.018 1 71.842 71.342 72.342 -6.1757 0 0 0 0.18351 1 51051 51051 32.786 5.1569 1 37826 9223 25265 25752 44414 44414 0.058303159943761784 LTGLHGRF 8 Unmodified _LTGLHGRF_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7565307617188 2 450.756144 899.497735 0.49221 0.00022187 1.1742 0.00052929 1.6664 0.00075115 450.7567628703599 38.594 0.48508 34.225 33.996 34.481 -4.3689 54 30 2 0 0 0 0.6895 1 22847 22847 18.135 2.2878 1 35365000 + 37827 19029 25266 25753 44415 44415 0.04396641682762947 LTGNAGDFY 9 Unmodified _LTGNAGDFY_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.431396484375 1 957.431238 956.423961 0.025258 2.4183E-05 0.38026 0.00036407 0.40552 0.00038825 957.4315472999643 43.254 0.33322 43.254 43.065 43.399 0 50 16 4 0 0 0 0.12424 1 23407 23407 30.637 4.2953 1 38720000 + 37828 20138 25267 25754 44416 44416 -0.05599371270238862 LTGNAGDFY 9 Unmodified _LTGNAGDFY_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2190246582031 2 479.219257 956.423961 0.37292 0.00017871 0.49076 0.00023518 0.86368 0.00041389 479.2193112787899 43.22 0.23502 43.22 43.065 43.3 0 30 11 3 0 0 0 0.34999 1 23414 23414 14.838 1.3304 1 38403000 + 37829 20138 25267 25754 44417 44417 -0.05599371270238862 LTGNAGDFY 9 Unmodified _LTGNAGDFY_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.43115234375 1 957.431238 956.423961 0.67246 0.00064384 0.2107 0.00020173 0.88316 0.00084557 957.431303078499 49.923 0.36452 44.384 44.201 44.565 -5.5391 37 22 2 0 0 0 0.28023 1 31281 31281 18.146 18.146 1 20983000 + 37830 20138 25267 25754 44418 44418 -0.05599371270238862 LTGYYKTVEAF 11 Unmodified _LTGYYKTVEAF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3323974609375 2 646.332079 1290.6496 0.46977 0.00030363 0.53945 0.00034867 1.0092 0.00065229 646.3321023011413 99.599 0.14269 93.424 93.365 93.508 -6.1757 19 8 3 0 0 0 0.26767 1 66405 66405 28.495 8.0409 1 24053000 37831 3227 25268 25755 44419 44419 0.01590533129137839 LTHFDSTLY 9 Unmodified _LTHFDSTLY_ 0 0 0 REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF REV__ENST00000481982.1_1_1:101490795-101490999:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2880249023438 2 548.769114 1095.52368 -0.058286 -3.1986E-05 0.43939 0.00024112 0.3811 0.00020914 548.7689388408094 31.748 0.22081 31.748 31.619 31.84 0 16 10 2 0 0 0 0.17275 1 16553 16553 15.847 0 1 1772600 + 37832 27711 25269 25756 44420 44420 -0.02026553656287433 LTHFRGKSDNM 11 Unmodified _LTHFRGKSDNM_ 0 0 0 REV__ENST00000584580.1_1_17:45911366-45911959:+|nuORF REV__ENST00000584580.1_1_17:45911366-45911959:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.1926574707031 3 435.883795 1304.62955 NaN NaN NaN NaN NaN NaN NaN 67.854 1 67.854 67.354 68.354 0 0 0 0 0.94293 1 37834 37834 0.40827 0 1 + 37833 29082 25270 25757 44421 44421 -0.010575410824458231 LTHHLFQY 8 Unmodified _LTHHLFQY_ 0 0 0 REV__ENSG00000143851|ENST00000691036|PTPN7 REV__ENSG00000143851|ENST00000691036|PTPN7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.7984619140625 2 529.774534 1057.53451 1.4429 0.00076442 0.31219 0.00016539 1.7551 0.00092981 530.2767526368992 64.238 0.053307 58.062 58.036 58.09 -6.1757 4 2 2 0 0 0 8.7369 1 41599 41599 12.532 0 1 3436900 + 37834 20676 25271 25758 44422 44422 0.00804893508643545 LTHKLYGLLK 10 Unmodified _LTHKLYGLLK_ 0 0 0 REV__ENSG00000175220|ENST00000311956|ARHGAP1 REV__ENSG00000175220|ENST00000311956|ARHGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3690185546875 2 593.371341 1184.72813 NaN NaN NaN NaN NaN NaN NaN 103.58 1 103.54 103.04 104.04 -0.047928 0 0 0 0.99248 1 57526 57526 1.4819 0 1 + 37835 22853 25272 25759 44423 44423 0.14315430224905867 LTHLLYLFLF 10 Unmodified _LTHLLYLFLF_ 0 0 0 REV__ENSG00000188910|ENST00000373366|GJB3 REV__ENSG00000188910|ENST00000373366|GJB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2528381347656 3 427.253154 1278.73763 0.26963 0.0001152 -1.3503 -0.0005769 -1.0806 -0.0004617 427.25247665551075 75.608 1.9244 75.656 74.209 76.133 0.047943 153 88 4 0 0 0 0.70734 1 41042 41042 2.086 0.87118 1 5807900 + 37836 23743 25273 25760 44424 44424 0.1094119851038613 LTHLRNHNLQL 11 Unmodified _LTHLRNHNLQL_ 0 0 0 REV__ENSG00000129009|ENST00000249842|ISLR REV__ENSG00000129009|ENST00000249842|ISLR MSMS AL20221201_MKP_PDAC_01 4 679.884521484375 2 679.88621 1357.75787 NaN NaN NaN NaN NaN NaN NaN 90.684 1 84.508 84.008 85.008 -6.1757 0 0 0 0.77961 1 59917 59917 13.042 2.243 1 + 37837 19646 25274 25761 44425 44425 0.09329762222932914 LTHSINDL 8 Unmodified _LTHSINDL_ 0 0 0 REV__ENST00000345317.6_1_7:26706920-26707058:-|nuORF REV__ENST00000345317.6_1_7:26706920-26707058:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7433776855469 2 456.742899 911.471246 1.0038 0.00045846 -1.2806 -0.0005849 -0.27682 -0.00012643 456.74251532188697 36.506 0.35896 36.506 36.311 36.67 0 32 17 3 0 0 0 0.78849 1 19459 19459 9.3474 0 1 9496800 + 37838 25753 25275 25762 44426 44426 0.011969080007474986 LTHSLEECLV 10 Unmodified _LTHSLEECLV_ 0 0 0 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7932739257812 2 572.289356 1142.56416 0.89837 0.00051413 -1.2512 -0.00071604 -0.35281 -0.00020191 572.2885525601179 75.416 1.2111 74.939 74.676 75.887 -0.47713 193 57 6 0 0 0 0.21783 1 41184 41184 18.146 18.146 1 614980000 37839 2001 25276 25763 44427 44427 -0.001419553281948538 LTHTHTHTY 9 Unmodified _LTHTHTHTY_ 0 0 0 REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF REV__ENST00000589503.1_1_19:41938138-41938741:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.769775390625 2 555.76998 1109.52541 0.4655 0.00025871 0.79914 0.00044414 1.2646 0.00070285 555.7702262004137 96.733 0.43262 96.733 96.562 96.995 0 30 24 2 0 0 0 0.55144 1 53535 53535 4.3292 0 1 477130 + 37840 29139 25277 25764 44428 44428 -0.024974998476636756 LTHVSDVSPF 10 Unmodified _LTHVSDVSPF_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2825317382812 2 551.282389 1100.55022 NaN NaN NaN NaN NaN NaN NaN 71.389 1 71.389 70.889 71.889 0 0 0 0 0.94014 1 39765 39765 6.2058 0.44535 1 + 37841 19503 25278 25765 44429 44429 0.003971352350617963 LTIEVAELQ 9 Unmodified _LTIEVAELQ_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2874145507812 2 508.28714 1014.55973 1.0158 0.00051632 -0.092661 -4.7099E-05 0.92315 0.00046922 508.2870708882356 49.551 0.63735 49.502 49.29 49.927 -0.048824 104 31 5 0 0 0 0.12424 1 26798 26798 30.637 1.555 1 215360000 37842 4095 25279 25766 44430 44430 0.05302903520566815 LTIKTESTL 9 Unmodified _LTIKTESTL_ 0 0 0 ENST00000435729.1_1_2:152042805-152043093:+|nuORF;nc|ENSG00000293165|A8MUU1|FABP5P3;ENST00000477993.1_1_7:152139729-152140032:+|nuORF;ENSG00000164687|ENST00000297258|FABP5 ENST00000435729.1_1_2:152042805-152043093:+|nuORF ENST00000435729.1_1_2:152042805-152043093:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2958374023438 2 503.294965 1004.57538 1.2919 0.0006502 0.79907 0.00040217 2.0909 0.0010524 503.79549947205584 90.847 0.53852 84.672 84.474 85.012 -6.1757 72 31 4 0 0 0 0.32871 1 60248 60248 15.847 0.078963 1 32470000 37843 7228 25280 25767 44431 44431 0.07327190037631226 LTIRNPLLY 9 Unmodified _LTIRNPLLY_ 0 0 0 REV__ENSG00000126773|ENST00000406854|PCNX4 REV__ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8347778320312 2 551.834591 1101.65463 0.98553 0.00054385 -0.3385 -0.0001868 0.64703 0.00035705 551.8343638935899 66.048 0.32944 66.058 65.873 66.202 0.0095596 46 16 4 0 0 0 0.011291 1 36178 36178 74.929 5.8241 1 35105000 + 37844 19558 25281 25768 44432 44432 0.10786881782428281 LTISGTIMK 9 Oxidation (M) _LTISGTIM(Oxidation (M))K_ LTISGTIM(1)K LTISGTIM(51)K 0 0 1 ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF ENSG00000090674|ENST00000264079|MCOLN1 ENSG00000090674|ENST00000264079|MCOLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2822875976562 2 490.27826 978.541968 0.84387 0.00041373 3.7066 0.0018173 4.5505 0.002231 490.2815703484139 70.219 0.39642 64.044 63.828 64.224 -6.1757 57 22 4 0 0 0 0.038285 1 45861 45861 50.855 16.753 1 46118000 37845 1566 25282 25769 44433 44433 264 0.051838649940805226 LTIVDSEVKGQ 11 Unmodified _LTIVDSEVKGQ_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.2923583984375 2 594.82716 1187.63977 0.068492 4.0741E-05 0.90323 0.00053727 0.97173 0.00057801 594.8277441172429 46.668 0.31135 41.587 41.393 41.705 -5.0805 110 65 2 0 0 0 0.27394 1 28956 28956 21.537 7.6309 1 76458000 + 37846 19026 25283 25770 44434 44434 0.05345345123782863 LTIVDTGKPI 10 Unmodified _LTIVDTGKPI_ 0 0 0 REV__ENSG00000197446|ENST00000331105|CYP2F1 REV__ENSG00000197446|ENST00000331105|CYP2F1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7802734375 2 528.818607 1055.62266 1.2043 0.00063685 -4.2772 -0.0022619 -3.0729 -0.001625 528.8158075742248 97.934 0.13016 91.758 91.701 91.831 -6.1757 10 7 2 0 0 0 0.22941 1 64933 64933 5.7319 1.4026 1 4158100 + 37847 23926 25284 25771 44435 44435 0.09707469308614236 LTKETFMFSSL 11 Unmodified _LTKETFMFSSL_ 0 0 0 REV__ENSG00000183977|ENST00000389050|PP2D1 REV__ENSG00000183977|ENST00000389050|PP2D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.3348388671875 2 652.333764 1302.65297 0.42225 0.00027545 -0.58364 -0.00038073 -0.16139 -0.00010528 652.3333217563832 51.033 0.29331 51.033 50.857 51.15 0 34 14 3 0 0 0 0.59689 1 28118 28118 11.495 3.3392 1 11177000 + 37848 23390 25285 25772 44436 44436 0.013754599115145538 LTKHKRIHS 9 Unmodified _LTKHKRIHS_ 0 0 0 nc|ENSG00000290382|Q49A33|ZNF876P;ENST00000356347.3_1_4:247818-248640:+|nuORF nc|ENSG00000290382|Q49A33|ZNF876P nc|ENSG00000290382|Q49A33|ZNF876P MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8967895507812 3 373.896363 1118.66726 1.4944 0.00055874 -1.0697 -0.00039996 0.42466 0.00015878 373.8959492159885 100.5 0.18901 94.325 94.215 94.404 -6.1757 27 11 3 0 0 0 0.55775 1 67172 67172 2.2828 0.63015 1 60176000 37849 12090 25286 25773 44437 44437 0.11267337965318802 LTKHSKRVI 9 Unmodified _LTKHSKRVI_ 0 0 0 REV__ENST00000262215.7_1_8:68200216-68204141:-|nuORF REV__ENST00000262215.7_1_8:68200216-68204141:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.2758178710938 2 541.345658 1080.67676 0.78933 0.0004273 -0.60784 -0.00032905 0.1815 9.8252E-05 541.3453055309242 83.203 0.57613 77.027 76.79 77.366 -6.1757 50 30 2 0 0 0 0.20727 1 54609 54609 4.3292 0.38484 1 14810000 + 37850 25015 25287 25774 44438 44438 0.139651062508392 LTKIMADILA 10 Unmodified _LTKIMADILA_ 0 0 0 ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENST00000534205.1_1_11:35881882-35882566:-|nuORF ENST00000534205.1_1_11:35881882-35882566:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3025512695312 2 544.822835 1087.63112 0.25471 0.00013877 0.99156 0.00054022 1.2463 0.000679 544.8229381040645 69.827 0.20989 69.858 69.765 69.975 0.030914 15 10 2 0 0 0 0.23693 1 38451 38451 6.2058 0 1 2064400 37851 14947 25288 25775 44439 44439 0.09080699953574367 LTKLGIVSL 9 Unmodified _LTKLGIVSL_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.313720703125 2 472.312961 942.611368 1.0437 0.00049294 -0.28058 -0.00013252 0.76309 0.00036042 472.3127149836429 87.659 0.72494 81.483 81.075 81.8 -6.1757 58 39 2 0 0 0 0.05447 1 57855 57855 43.858 5.6827 1 14977000 + 37852 23742 25289 25776 44440 44440 0.13776692005137647 LTKNTPRFG 9 Unmodified _LTKNTPRFG_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2932739257812 2 517.293091 1032.57163 NaN NaN NaN NaN NaN NaN NaN 26.027 1 26.054 25.554 26.554 0.026951 0 0 0 0.84369 1 13490 13490 2.3027 0.4585 1 37853 6809 25290 25777 44441 44441 0.05664565054416926 LTKVHPWWRE 10 Unmodified _LTKVHPWWRE_ 0 0 0 ENST00000435744.5_1_21:14424137-14433010:+|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF ENST00000435744.5_1_21:14424137-14433010:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 676.3654174804688 2 676.367121 1350.71969 NaN NaN NaN NaN NaN NaN NaN 17.723 1 17.728 17.228 18.228 0.0050564 0 0 0 1.0029 1 8953 8953 0.35063 0.043601 1 37854 13318 25291 25778 44442 44442 0.05835876308242405 LTLADLEQL 9 Unmodified _LTLADLEQL_ 0 0 0 nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8 nc|ENSG00000198000|Q76FK4-4|NOL8 nc|ENSG00000198000|Q76FK4-4|NOL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2883605957031 2 508.28714 1014.55973 1.0158 0.00051632 -0.092661 -4.7099E-05 0.92315 0.00046922 508.2870708882356 49.551 0.63735 49.502 49.29 49.927 -0.048824 104 31 5 0 0 0 0.19127 2 26697 26697;26904 24.021 3.5669 1 215360000 37855 10035 25292 25779 44443;44444 44443 0.05302903520566815 LTLADLLLL 9 Unmodified _LTLADLLLL_ 0 0 0 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 ENSG00000126262|ENST00000599180|FFAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.63525390625 1 984.63396 983.626684 1.1936 0.0011752 0.56532 0.00055663 1.7589 0.0017319 984.6342534975713 102.57 0.093002 96.393 96.339 96.432 -6.1757 25 11 3 0 0 0 0.0083087 1 68809 68809 97.075 0 1 24102000 37856 3941 25293 25780 44445 44445 0.1342155880233804 LTLDGFLFL 9 Unmodified _LTLDGFLFL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7960205078125 2 519.797143 1037.57973 1.142 0.00059362 -1.9833 -0.0010309 -0.84126 -0.00043729 519.7963628756968 101.25 0.09288 95.073 95.032 95.125 -6.1757 9 5 2 0 0 0 0.026094 1 67911 67911 57.471 0 1 27377000 37857 5289 25294 25781 44446 44446 0.06244699251192287 LTLDVELPP 9 Unmodified _LTLDVELPP_ 0 0 0 nc|ENSG00000213005|Q9NZH4|PTTG3P nc|ENSG00000213005|Q9NZH4|PTTG3P nc|ENSG00000213005|Q9NZH4|PTTG3P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2870483398438 2 498.784233 995.553913 -0.79625 -0.00039716 2.8916 0.0014423 2.0953 0.0010451 498.7853256153669 78.029 0.23257 77.546 77.527 77.76 -0.4826 17 11 2 0 0 0 0.55144 1 42752 42752 4.3292 1.7518 1 1477300 37858 16540 25295 25782 44447 44447 0.05595805008897514 LTLEDLVG 8 Unmodified _LTLEDLVG_ 0 0 0 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 MSMS AL20221201_MKP_PDAC_01 4 430.5460205078125 2 430.242201 858.469849 NaN NaN NaN NaN NaN NaN NaN 28.794 1 25.646 25.146 26.146 -3.1482 0 0 0 0.77249 1 16092 16092 24.674 0 1 37859 4628 25296 25783 44448 44448 0.03495273912017183 LTLENEYKL 9 Unmodified _LTLENEYKL_ 0 0 0 REV__ENSG00000173908|ENST00000306658|KRT28 REV__ENSG00000173908|ENST00000306658|KRT28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8057250976562 2 561.805697 1121.59684 NaN NaN NaN NaN NaN NaN NaN 60.933 1 60.444 59.944 60.944 -0.48932 0 0 0 0.34649 1 33186 33186 22.736 0.078198 1 + + 37860 16884 25297 25784 44449 44449 0.04090575066334168 LTLEQKNIA 9 Unmodified _LTLEQKNIA_ 0 0 0 nc|nan|Q9BVC5-2|C2orf49;ENSG00000135974|ENST00000258457|C2orf49 nc|nan|Q9BVC5-2|C2orf49 nc|nan|Q9BVC5-2|C2orf49 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3016357421875 2 515.300581 1028.58661 0.79538 0.00040986 1.1885 0.00061243 1.9839 0.0010223 515.3011079125572 63.397 0.3379 57.221 57 57.338 -6.1757 47 19 3 0 0 0 0.19127 1 40917 40917 24.021 0.87215 1 41052000 37861 4771 25298 25785 44450 44450 0.07346012131779389 LTLFRYYIF 9 Unmodified _LTLFRYYIF_ 0 0 0 REV__ENSG00000109133|ENST00000504986|TMEM33 REV__ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.5648498535156 3 412.56562 1234.67503 -0.32938 -0.00013589 -2.4195 -0.00099822 -2.7489 -0.0011341 412.564838066758 35.095 0.174 34.873 34.784 34.958 -0.2224 12 7 2 0 0 0 0.54444 1 18370 18370 2.7352 0 1 1666900 + 37862 18648 25299 25786 44451 44451 0.06708052442218104 LTLGQLLTYPL 11 Unmodified _LTLGQLLTYPL_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.7437744140625 3 411.248068 1230.72238 0.98367 0.00040453 -3.1499 -0.0012954 -2.1663 -0.00089088 411.24654331326803 34.534 0.21462 30.439 30.384 30.599 -4.0951 18 12 2 0 0 0 0.30073 1 19917 19917 2.6312 0 1 8163300 37863 8841 25300 25787 44452 44452 0.11624286922551619 LTLHEIIQMV 10 Unmodified _LTLHEIIQMV_ 0 0 0 REV__nc|ENSG00000108506|Q9H0H0|INTS2 REV__nc|ENSG00000108506|Q9H0H0|INTS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.2928466796875 2 598.839017 1195.66348 0.068605 4.1083E-05 -1.6502 -0.00098818 -1.5816 -0.0009471 599.3390998455167 75.609 0.23521 75.657 75.537 75.773 0.047943 21 10 3 0 0 0 0.23862 1 41728 41728 3.9444 0.3479 1 1872700 + 37864 18610 25301 25788 44453 44453 0.0734748735658286 LTLIKKKKK 9 Unmodified _LTLIKKKKK_ 0 0 0 ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF ENST00000471326.5_1_1:154245614-154245674:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2694091796875 3 367.269027 1098.78525 NaN NaN NaN NaN NaN NaN NaN 95.222 1 95.226 94.726 95.726 0.004158 0 0 0 0.8622 1 52907 52907 0 0 1 37865 13869 25302 25789 44454 44454 0.23980897501246545 LTLIRRLFFF 10 Unmodified _LTLIRRLFFF_ 0 0 0 REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.7889404296875 2 663.408258 1324.80196 NaN NaN NaN NaN NaN NaN NaN 84.1 1 83.601 83.101 84.101 -0.49961 0 0 0 0.99091 1 46027 46027 1.6526 0.17072 1 + 37866 25655 25303 25790 44455 44455 0.15255398387193964 LTLKEPHEL 9 Unmodified _LTLKEPHEL_ 0 0 0 REV__ENSG00000140511|ENST00000359595|HAPLN3 REV__ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.30859375 2 540.308406 1078.60226 0.62393 0.00033712 0.037178 2.0087E-05 0.66111 0.0003572 540.3083707847948 84.039 1.9547 77.863 76.883 78.837 -6.1757 319 108 4 0 0 0 0.08691 1 55738 55738 36.127 1.195 1 147910000 + 37867 20478 25304 25791 44456 44456 0.0661029864882039 LTLKKLYFL 9 Unmodified _LTLKKLYFL_ 0 0 0 REV__nc|ENSG00000167608|Q7Z404-3|TMC4 REV__nc|ENSG00000167608|Q7Z404-3|TMC4 MSMS AL20221201_MKP_PDAC_01 4 380.2464294433594 3 380.245999 1137.71617 NaN NaN NaN NaN NaN NaN NaN 97.731 1 91.555 91.055 92.055 -6.1757 0 0 0 0.18978 1 64768 64768 32.037 12.676 1 + 37868 22226 25305 25792 44457 44457 0.15281813481692552 LTLKLDKL 8 Unmodified _LTLKLDKL_ 0 0 0 REV__ENSG00000188735|ENST00000449592|TMEM120B REV__ENSG00000188735|ENST00000449592|TMEM120B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.3125610351562 2 472.312961 942.611368 0.40349 0.00019057 -0.3361 -0.00015874 0.067391 3.183E-05 472.31266167388367 71.904 0.42159 71.943 71.727 72.149 0.039024 45 20 3 0 0 0 0.56356 1 39635 39635 29.082 2.1979 1 5737400 + 37869 23726 25306 25793 44458 44458 0.13776692005137647 LTLKWTPN 8 Unmodified _LTLKWTPN_ 0 0 0 ENSG00000141258|ENST00000268989|SGSM2;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENST00000574857.1_1_17:2267361-2267601:+|nuORF ENSG00000141258|ENST00000268989|SGSM2 ENSG00000141258|ENST00000268989|SGSM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7796020507812 2 486.779285 971.544017 1.3505 0.00065737 -0.010387 -5.056E-06 1.3401 0.00065232 486.7790878864045 96.565 0.45493 90.389 90.15 90.605 -6.1757 75 26 4 0 0 0 0.46677 1 64001 64001 37.974 3.8716 1 147420000 37870 5310 25307 25794 44459 44459 0.0571066179418267 LTLLLILTTT 10 Unmodified _LTLLLILTTT_ 0 0 0 ENSG00000204160|ENST00000374142|ZDHHC18 ENSG00000204160|ENST00000374142|ZDHHC18 ENSG00000204160|ENST00000374142|ZDHHC18 MSMS AL20221201_MKP_PDAC_01 4 551.3606567382812 2 551.360108 1100.70566 NaN NaN NaN NaN NaN NaN NaN 106.24 1 100.06 99.563 100.56 -6.1757 0 0 0 1.0061 1 71123 71123 0 0 1 37871 10246 25308 25795 44460 44460 0.15933786036612219 LTLLNVYH 8 Unmodified _LTLLNVYH_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000508032.5_1_4:24529549-24538851:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.780029296875 2 486.779285 971.544017 0.47579 0.0002316 1.0744 0.000523 1.5502 0.0007546 486.7794700331471 74.518 0.4027 74.564 74.411 74.813 0.045967 45 17 4 0 0 0 0.63229 1 41153 41153 23.148 0 1 11303000 37872 2658 25309 25796 44461 44461 0.057106617941940385 LTLLYPFHL 9 Unmodified _LTLLYPFHL_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.8252563476562 2 558.826235 1115.63792 0.37756 0.00021099 -2.1587 -0.0012064 -1.7812 -0.00099537 558.8247355145866 76.343 0.40895 75.864 75.594 76.003 -0.47945 46 17 4 0 0 0 0.12841 1 41712 41712 30.225 7.4885 1 2386700 + 37873 22458 25310 25797 44462 44462 0.08472380896455434 LTLPLVEQKVI 11 Unmodified _LTLPLVEQKVI_ 0 0 0 REV__nc|ENSG00000075151|O43432|EIF4G3 REV__nc|ENSG00000075151|O43432|EIF4G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.6005249023438 3 418.267351 1251.78022 0.78465 0.00032819 -1.2575 -0.00052595 -0.47281 -0.00019776 418.2670231056682 93.528 0.22177 87.352 87.247 87.469 -6.1757 19 13 2 0 0 0 0.42951 1 61923 61923 19.987 2.1237 1 10993000 + 37874 17562 25311 25798 44463 44463 0.16440548847981518 LTLPPVIIY 9 Unmodified _LTLPPVIIY_ 0 0 0 REV__ENSG00000136051|ENST00000332180|WASHC4 REV__ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.822265625 2 514.823161 1027.63177 0.85376 0.00043954 0.24249 0.00012484 1.0963 0.00056438 514.8237000954591 101.37 0.12943 95.199 95.144 95.274 -6.1757 9 5 2 0 0 0 0.023164 1 68022 68022 60.39 7.6965 1 17500000 + 37875 20132 25312 25799 44464 44464 0.11905862664957567 LTLRDHSLH 9 Unmodified _LTLRDHSLH_ 0 0 0 ENST00000564212.1_1_16:48657430-48705855:+|nuORF ENST00000564212.1_1_16:48657430-48705855:+|nuORF ENST00000564212.1_1_16:48657430-48705855:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2752685546875 2 546.301447 1090.58834 0.40888 0.00022337 -0.27368 -0.00014951 0.1352 7.3857E-05 546.3011458914517 99.623 0.17521 93.448 93.365 93.541 -6.1757 13 10 2 0 0 0 0.19891 1 66473 66473 11.64 0.81637 1 22354000 37876 15379 25313 25800 44465 44465 0.046670659403844184 LTLRKHPNQL 10 Unmodified _LTLRKHPNQL_ 0 0 0 REV__ENSG00000204779|ENST00000377420|FOXD4L5 REV__ENSG00000204779|ENST00000377420|FOXD4L5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2471008300781 3 407.247173 1218.71969 -0.15459 -6.2956E-05 -0.084633 -3.4466E-05 -0.23922 -9.7422E-05 407.24712839675294 33.631 0.35597 33.66 33.503 33.859 0.028934 45 15 4 0 0 0 0.67413 1 17772 17772 5.7834 0.88642 1 27772000 + 37877 23434 25314 25801 44466 44466 0.11907876308282539 LTLSGIYAHI 10 Unmodified _LTLSGIYAHI_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3119506835938 2 544.310949 1086.60735 0.095858 5.2176E-05 0.76053 0.00041397 0.85639 0.00046614 544.311387448053 33.689 0.23337 33.718 33.604 33.837 0.028934 21 9 3 0 0 0 0.60623 1 17736 17736 10.824 0 1 2731000 37878 7262 25315 25802 44467 44467 0.06750602511419856 LTLSGIYAHI 10 Unmodified _LTLSGIYAHI_ 0 0 0 ENSG00000164916|ENST00000328914|FOXK1;nc|ENSG00000164916|P85037-2|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.310949 1086.60735 -0.48896 -0.00026614 1.6448 0.0008953 1.1559 0.00062916 544.3120009133122 33.973 0.27366 33.782 33.643 33.917 -0.19131 0.031984 0.00028268 NaN 10.824 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4017400 37879 7262 25315 25802 0.06750602511419856 LTLSPEDKL 9 Unmodified _LTLSPEDKL_ 0 0 0 ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2885131835938 2 508.28714 1014.55973 0.62911 0.00031977 1.0345 0.00052583 1.6636 0.0008456 508.2877888350719 54.612 0.66565 48.747 48.454 49.119 -5.8653 146 41 4 0 0 0 0.12424 1 34897 34897 30.637 3.7529 1 696850000 37880 14462 25316 25803 44468 44468 0.05302903520566815 LTLTAGKL 8 Unmodified _LTLTAGKL_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B REV__ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.763427734375 2 408.763104 815.511654 0.5305 0.00021685 -0.60404 -0.00024691 -0.073543 -3.0062E-05 408.7628172790156 36.524 0.30175 36.524 36.388 36.69 0 35 14 3 0 0 0 0.098639 1 19346 19346 100.37 3.2968 1 20562000 + 37881 22202 25317 25804 44469 44469 0.09651874391192905 LTLTAGKL 8 Unmodified _LTLTAGKL_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B REV__ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7633972167969 2 408.763104 815.511654 0.24058 9.8342E-05 0.55765 0.00022795 0.79824 0.00032629 408.7633899158187 41.408 0.41489 36.8 36.599 37.014 -4.6079 49 27 2 0 0 0 0.098639 1 24922 24922 100.37 15.015 1 47845000 + 37882 22202 25317 25804 44470 44470 0.09651874391192905 LTLTAGKL 8 Unmodified _LTLTAGKL_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B REV__ENSG00000167306|ENST00000285039|MYO5B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 408.763104 815.511654 0.5305 0.00021685 -0.60404 -0.00024691 -0.073543 -3.0062E-05 408.7628172790156 36.524 0.30175 36.524 36.388 36.69 0 -0.13844 -0.00045691 NaN 100.37 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 20562000 + 37883 22202 25317 25804 0.09651874391192905 LTMFKLFI 8 Unmodified _LTMFKLFI_ 0 0 0 REV__ENST00000377223.5_1_1:10002691-10003325:-|nuORF REV__ENST00000377223.5_1_1:10002691-10003325:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.798583984375 2 506.798632 1011.58271 NaN NaN NaN NaN NaN NaN NaN 44.453 1 44.431 43.931 44.931 -0.022064 0 0 0 0.85975 1 23852 23852 20.454 0 1 + 37884 26243 25318 25805 44471 44471 0.07738251104353822 LTMFLMRME 9 Unmodified _LTMFLMRME_ 0 0 0 ENST00000296564.8_2_5:5457633-5457672:+|nuORF ENST00000296564.8_2_5:5457633-5457672:+|nuORF ENST00000296564.8_2_5:5457633-5457672:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.204345703125 2 586.287248 1170.55994 0.10084 5.9121E-05 0.072767 4.2662E-05 0.17361 0.00010178 586.7889743199779 84.367 0.28164 84.367 84.206 84.488 0 20 13 2 0 0 0 0.21889 1 46707 46707 0.6015 0 1 401000 37885 11512 25319 25806 44472 44472 -0.01851459347085438 LTMLQEQFMAG 11 Unmodified _LTMLQEQFMAG_ 0 0 0 REV__nc|ENSG00000137497|Q14980-4|NUMA1 REV__nc|ENSG00000137497|Q14980-4|NUMA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 634.30615234375 2 634.804316 1267.59408 1.2586 0.00079898 1.3667 0.00086756 2.6253 0.0016665 634.8051111781291 64.144 0.43338 57.968 57.752 58.186 -6.1757 37 22 2 0 0 0 0.27972 1 41427 41427 18.146 2.8979 1 11027000 + 37886 20245 25320 25807 44473 44473 -0.02901339654476942 LTMLSQAFECY 11 Unmodified _LTMLSQAFECY_ 0 0 0 REV__ENST00000517516.1_1_8:124262398-124279521:-|nuORF REV__ENST00000517516.1_1_8:124262398-124279521:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7513427734375 3 435.866642 1304.5781 0.40192 0.00017519 1.3584 0.00059209 1.7603 0.00076727 435.86736749526267 75.531 0.27345 75.579 75.454 75.727 0.047943 19 12 2 0 0 0 0.306 1 41617 41617 0.45452 0.29519 1 1294500 + 37887 28225 25321 25808 44474 44474 -0.062010458913619004 LTMNVYHH 8 Unmodified _LTMNVYHH_ 0 0 0 REV__UFSP2|p.N208Kfs*20|1|0.41|ENSG00000109775|chr4:185415215-185415216|-/T|frameshift_variant REV__UFSP2|p.N208Kfs*20|1|0.41|ENSG00000109775|chr4:185415215-185415216|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7437438964844 2 507.744919 1013.47529 NaN NaN NaN NaN NaN NaN NaN 16.229 1 16.229 15.729 16.729 0 0 0 0 0.97444 1 7893 7893 0.79363 0.10326 1 + 37888 18671 25322 25809 44475 44475 -0.030913257771771896 LTMRQENI 8 Unmodified _LTMRQENI_ 0 0 0 REV__nc|ENSG00000113580|P04150-16|NR3C1 REV__nc|ENSG00000113580|P04150-16|NR3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7640991210938 2 502.763309 1003.51206 1.0011 0.00050333 -0.41232 -0.0002073 0.5888 0.00029603 502.763329059301 34.835 0.58493 30.74 30.438 31.023 -4.0951 103 34 4 0 0 0 0.50364 1 20278 20278 34.402 2.0962 1 116310000 + 37889 18876 25323 25810 44476 44476 0.010449260487234824 LTNDYELNI 9 Unmodified _LTNDYELNI_ 0 0 0 nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13 nc|ENSG00000197641|Q9UIV8-2|SERPINB13 nc|ENSG00000197641|Q9UIV8-2|SERPINB13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7723388671875 2 547.771854 1093.52915 -0.25087 -0.00013742 1.0333 0.00056602 0.78244 0.0004286 547.7723869077623 76.813 0.39103 76.334 76.149 76.54 -0.47945 65 18 5 0 0 0 0.28047 1 42107 42107 18.135 2.2878 1 11031000 37890 9986 25324 25811 44477 44477 -0.013868748644881634 LTNIYKPVL 9 Unmodified _LTNIYKPVL_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2191772460938 3 354.21822 1059.63283 1.7653 0.0006253 -0.97512 -0.00034541 0.79017 0.00027989 354.2181104059502 50.567 0.37266 45.028 44.808 45.18 -5.5391 37 23 2 0 0 0 0.28023 1 31700 31700 17.443 1.704 1 33027000 37891 9669 25325 25812 44478 44478 0.10540077033851958 LTNLLKYY 8 Unmodified _LTNLLKYY_ 0 0 0 REV__nc|ENSG00000213047|Q6P3S1-3|DENND1B REV__nc|ENSG00000213047|Q6P3S1-3|DENND1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3162841796875 2 514.294768 1026.57498 0.56232 0.0002892 0.88158 0.00045339 1.4439 0.00074259 514.7976436126131 48.384 0.21655 48.341 48.179 48.395 -0.04369 14 10 2 0 0 0 8.7369 1 26038 26038 13.508 5.5977 1 1684600 + 37892 24271 25326 25813 44479 44479 0.0627581510843811 LTNMVKPCL 9 Unmodified _LTNMVKPCL_ 0 0 0 AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|10|3|sense;ENST00000436697.2_2_15:55609693-55609819:-|nuORF AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|10|3|sense AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|10|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2767639160156 2 509.774831 1017.53511 0.44616 0.00022744 0.4713 0.00024026 0.91747 0.0004677 509.7752680757531 61.264 0.45554 61.264 60.999 61.455 0 66 19 4 0 0 0 0.095405 1 34075 34075 34.102 10.954 1 6570000 37893 22 25327 25814 44480 44480 0.027042288418442695 LTNSSSHSSY 10 Unmodified _LTNSSSHSSY_ 0 0 0 REV__ENSG00000105738|ENST00000222345|SIPA1L3;REV__nc|ENSG00000197555|O43166-3|SIPA1L1 REV__nc|ENSG00000197555|O43166-3|SIPA1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.73876953125 2 541.741085 1081.46762 NaN NaN NaN NaN NaN NaN NaN 77.517 1 77.035 76.535 77.535 -0.4826 0 0 0 0.85122 1 42437 42437 10.074 1.4806 1 + 37894 23937;18454 25328 25815 44481 44481 -0.06985806563739061 LTNSTEELDN 10 Unmodified _LTNSTEELDN_ 0 0 0 nc|ENSG00000060566|Q68CJ9-4|CREB3L3;nc|ENSG00000060566|Q68CJ9-2|CREB3L3;ENSG00000060566|ENST00000078445|CREB3L3 nc|ENSG00000060566|Q68CJ9-4|CREB3L3 nc|ENSG00000060566|Q68CJ9-4|CREB3L3 MSMS AL20221201_MKP_PDAC_01 4 379.1752014160156 3 379.175297 1134.50406 NaN NaN NaN NaN NaN NaN NaN 47.398 1 42.164 41.664 42.664 -5.2339 0 0 0 0.97556 1 29410 29410 3.3196 0.58445 1 37895 828 25329 25816 44482 44482 -0.05780974457707089 LTNTINLYI 9 Unmodified _LTNTINLYI_ 0 0 0 REV__ENST00000420833.5_1_7:12258097-12270062:+|nuORF REV__ENST00000420833.5_1_7:12258097-12270062:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8036499023438 2 532.802957 1063.59136 1.0633 0.00056655 -0.5307 -0.00028276 0.53265 0.0002838 532.8026942726009 87.047 0.55785 80.871 80.588 81.146 -6.1757 76 30 3 0 0 0 0.032796 1 57252 57252 53.833 1.5644 1 50671000 + 37896 18509 25330 25817 44483 44483 0.06210896274501465 LTNYLEDIEI 10 Unmodified _LTNYLEDIEI_ 0 0 0 nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A nc|ENSG00000186642|O00408-5|PDE2A nc|ENSG00000186642|O00408-5|PDE2A MSMS AL20221201_MKP_PDAC_01 4 408.2144470214844 3 408.211571 1221.61288 NaN NaN NaN NaN NaN NaN NaN 89.342 1 83.166 82.666 83.666 -6.1757 0 0 0 0.71851 1 58975 58975 9.544 0 1 37897 9491 25331 25818 44484 44484 0.010942365125856668 LTNYLELF 8 Unmodified _LTNYLELF_ 0 0 0 ENST00000441802.6_1_4:187532842-187532899:-|nuORF ENST00000441802.6_1_4:187532842-187532899:-|nuORF ENST00000441802.6_1_4:187532842-187532899:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.77197265625 2 506.771126 1011.5277 0.8253 0.00041824 1.0199 0.00051684 1.8452 0.00093507 506.77199069120655 99.993 0.30167 93.817 93.611 93.912 -6.1757 55 21 4 0 0 0 0.37649 1 66792 66792 46.921 4.8263 1 102040000 37898 13400 25332 25819 44485 44485 0.022395358374296848 LTPAPVEP 8 Unmodified _LTPAPVEP_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.4569091796875 1 823.455996 822.448719 0.082796 6.8179E-05 -0.067659 -5.5714E-05 0.015137 1.2465E-05 823.4560373453255 69.269 0.34177 69.269 69.103 69.444 0 32 14 3 0 0 0 0.37649 1 38554 38554 46.921 8.7697 1 3418200 37899 315 25333 25820 44486 44486 0.030393086031381245 LTPDFPSL 8 Unmodified _LTPDFPSL_ 0 0 0 ENSG00000164303|ENST00000296741|ENPP6 ENSG00000164303|ENST00000296741|ENPP6 ENSG00000164303|ENST00000296741|ENPP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 889.4652099609375 1 889.466561 888.459284 0.086306 7.6767E-05 -0.69598 -0.00061905 -0.60968 -0.00054229 889.4658240686363 75.369 0.43005 74.892 74.696 75.126 -0.47714 40 23 2 0 0 0 0.37649 1 41304 41304 46.921 3.9529 1 2061600 37900 7174 25334 25821 44487 44487 0.01059291257570294 LTPEKEHFI 9 Unmodified _LTPEKEHFI_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP;nc|ENSG00000133030|Q6WCQ1|MPRIP;nc|ENSG00000133030|Q6WCQ1-2|MPRIP;nc|ENSG00000133030|Q6WCQ1-3|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8029174804688 2 557.300581 1112.58661 0.755 0.00042076 -0.19663 -0.00010958 0.55838 0.00031118 557.3003649813077 64.655 0.45183 64.17 63.821 64.273 -0.48512 47 20 3 0 0 0 0.34999 1 35201 35201 14.838 3.198 1 3836200 37901 4480 25335 25822 44488 44488 0.03482012131757983 LTPEKFDKL 9 Unmodified _LTPEKFDKL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10826351-10827587:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.2100524902344 3 364.209613 1089.60701 0.59792 0.00021777 -0.47988 -0.00017478 0.11803 4.2988E-05 364.20939336208966 36.544 0.54871 36.544 36.388 36.936 0 62 26 3 0 0 0 0.43515 2 19332 19332;19438 10.8 0.72558 1 171620000 37902 2711 25336 25823 44489;44490 44489 0.0657918279155183 LTPEKFDKL 9 Unmodified _LTPEKFDKL_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10826351-10827587:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2096862792969 3 364.209613 1089.60701 0.80747 0.00029409 0.36909 0.00013443 1.1766 0.00042852 364.20974362760757 41.392 0.72155 36.784 36.528 37.25 -4.6079 130 46 4 0 0 0 0.43515 1 24881 24881 10.8 2.3552 1 347610000 37903 2711 25336 25823 44491 44491 0.0657918279155183 LTPELAQVNEY 11 Unmodified _LTPELAQVNEY_ 0 0 0 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 MSMS AL20221201_MKP_PDAC_01 4 638.8253173828125 2 638.824618 1275.63468 NaN NaN NaN NaN NaN NaN NaN 64.631 1 58.456 57.956 58.956 -6.1757 0 0 0 0.63856 1 41888 41888 19.362 7.1213 1 37904 6588 25337 25824 44492 44492 0.007890412611459396 LTPEVEEFL 9 Unmodified _LTPEVEEFL_ 0 0 0 nc|ENSG00000131951|Q6ZRR7|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 MSMS AL20221201_MKP_PDAC_01 4 538.7875366210938 2 538.779148 1075.54374 NaN NaN NaN NaN NaN NaN NaN 100.14 1 93.963 93.463 94.463 -6.1757 0 0 0 0.33856 1 66896 66896 23.148 0 1 37905 16191 25338 25825 44493 44493 0.008991972836838613 LTPHLPDYG 9 Unmodified _LTPHLPDYG_ 0 0 0 REV__nc|ENSG00000170653|P17544-2|ATF7 REV__nc|ENSG00000170653|P17544-2|ATF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7589111328125 2 506.758549 1011.50255 1.0378 0.00052592 -0.60861 -0.00030842 0.42921 0.00021751 506.75829876137203 54.435 0.24088 48.57 48.401 48.641 -5.8653 24 14 2 0 0 0 0.031062 1 34489 34489 54.774 10.367 1 13290000 + 37906 22501 25339 25826 44494 44494 -0.0027451896515913177 LTPHLPDYG 9 Unmodified _LTPHLPDYG_ 0 0 0 REV__nc|ENSG00000170653|P17544-2|ATF7 REV__nc|ENSG00000170653|P17544-2|ATF7 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 506.758549 1011.50255 1.0378 0.00052592 -0.60861 -0.00030842 0.42921 0.00021751 506.75829876137203 54.435 0.24088 48.57 48.401 48.641 -5.8653 0.021831 -0.00026615 NaN 54.774 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 13290000 + 37907 22501 25339 25826 -0.0027451896515913177 LTPIMDEIP 9 Unmodified _LTPIMDEIP_ 0 0 0 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7711181640625 2 514.770268 1027.52598 0.27692 0.00014255 0.53939 0.00027766 0.81631 0.00042021 514.7705930909823 99.209 0.17101 99.016 98.917 99.088 -0.19321 13 5 3 0 0 0 0.41742 1 54170 54170 11.64 3.7301 1 6421800 + 37908 23399 25340 25827 44495 44495 0.013321587571681448 LTPIMDEIP 9 Unmodified _LTPIMDEIP_ 0 0 0 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.770268 1027.52598 0.27692 0.00014255 0.53939 0.00027766 0.81631 0.00042021 514.7705930909823 99.209 0.17101 99.016 98.917 99.088 -0.19321 0 0 NaN 11.64 13 5 3 NaN NaN NaN NaN 0 NaN NaN 0 6421800 + 37909 23399 25340 25827 0.013321587571681448 LTPLEVTKL 9 Unmodified _LTPLEVTKL_ 0 0 0 NYAP2|p.V365M|1|0.17|ENSG00000144460|chr2:225582510-225582510|G/A|missense_variant;nc|ENSG00000144460|Q9P242|NYAP2;ENSG00000144460|ENST00000272907|NYAP2 NYAP2|p.V365M|1|0.17|ENSG00000144460|chr2:225582510-225582510|G/A|missense_variant NYAP2|p.V365M|1|0.17|ENSG00000144460|chr2:225582510-225582510|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3158874511719 2 507.3157 1012.61685 0.20973 0.0001064 0.080106 4.0639E-05 0.28983 0.00014704 507.31579179794284 64.629 0.28174 64.144 63.971 64.253 -0.48512 20 12 2 0 0 0 0.16226 1 35264 35264 26.884 0 1 1174000 37910 5613 25341 25828 44496 44496 0.11104370796954299 LTPMLHEAYF 10 Unmodified _LTPMLHEAYF_ 0 0 0 REV__ENSG00000102967|ENST00000219240|DHODH REV__ENSG00000102967|ENST00000219240|DHODH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.3042602539062 2 611.302267 1220.58998 0.15133 9.251E-05 2.4127 0.0014749 2.564 0.0015674 611.3037128090924 51.719 0.28106 51.719 51.583 51.864 0 18 12 2 0 0 0 0.63089 1 28603 28603 10.824 0 1 2621700 + 37911 18270 25342 25829 44497 44497 -0.01149061085880021 LTPNSPAEML 10 Unmodified _LTPNSPAEML_ 0 0 0 ENSG00000138964|ENST00000444313|PARVG ENSG00000138964|ENST00000444313|PARVG ENSG00000138964|ENST00000444313|PARVG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7754516601562 2 536.7708 1071.52705 0.39007 0.00020938 1.4782 0.00079344 1.8682 0.0010028 536.7715732461153 86.847 0.58983 86.344 86.066 86.656 -0.50318 61 23 3 0 0 0 0.62068 1 47420 47420 10.074 0 1 3523900 37912 5120 25343 25830 44498 44498 -0.0058562687393077795 LTPNVPNV 8 Unmodified _LTPNVPNV_ 0 0 0 nc|ENSG00000141316|Q8IXA5-2|SPACA3;ENSG00000141316|ENST00000269053|SPACA3 nc|ENSG00000141316|Q8IXA5-2|SPACA3 nc|ENSG00000141316|Q8IXA5-2|SPACA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 853.4779052734375 1 853.477794 852.470518 -0.2479 -0.00021158 1.287 0.0010984 1.0391 0.00088684 853.4782817657477 51.924 0.16972 51.49 51.381 51.55 -0.43367 10 8 2 0 0 0 0.40602 1 28032 28032 43.858 9.671 1 1337200 37913 5314 25344 25831 44499 44499 0.038381133517077615 LTPPDTSGWF 10 Unmodified _LTPPDTSGWF_ 0 0 0 REV__nc|ENSG00000113327|P18507-3|GABRG2 REV__nc|ENSG00000113327|P18507-3|GABRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7758178710938 2 560.769114 1119.52368 0.56793 0.00031848 -0.012146 -6.8113E-06 0.55579 0.00031167 560.7688769799288 66.828 0.44658 66.828 66.594 67.04 0 58 20 4 0 0 0 0.52888 1 37216 37216 14.838 3.198 1 14746000 + 37914 29578 25345 25832 44500 44500 -0.0313055365627406 LTPPESSL 8 Unmodified _LTPPESSL_ 0 0 0 REV__ENST00000498152.1_1_3:113346508-113346667:+|nuORF REV__ENST00000498152.1_1_3:113346508-113346667:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2273864746094 2 422.226551 842.438549 -0.59328 -0.0002505 2.4651 0.0010408 1.8718 0.00079031 422.22746990893916 56.11 0.33376 55.624 55.414 55.748 -0.48554 23 16 2 0 0 0 0.74163 1 30437 30437 13.508 0 1 6140500 + 37915 27990 25346 25833 44501 44501 0.011027008779137759 LTPRQEAV 8 Unmodified _LTPRQEAV_ 0 0 0 ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.5675048828125 2 457.258717 912.50288 0.63555 0.00029061 -0.43104 -0.0001971 0.20451 9.3512E-05 457.2590351359576 40.45 0.27382 35.921 35.824 36.097 -4.5294 29 16 2 0 0 0 8.7369 1 24110 24110 20.454 2.3186 1 9687100 37916 3629 25347 25834 44502 44502 0.043129007547122455 LTPRRPPLL 9 Unmodified _LTPRRPPLL_ 0 0 0 ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF ENST00000366535.3_1_1:244615028-244615205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8433227539062 2 531.842751 1061.67095 1.3909 0.00073976 -0.51371 -0.00027321 0.87724 0.00046655 531.8425141412719 50.102 0.40454 50.053 49.846 50.25 -0.048828 58 19 4 0 0 0 0.05447 1 27137 27137 43.858 3.9086 1 14037000 37917 12201 25348 25835 44503 44503 0.14258007739181267 LTPRRRRP 8 Unmodified _LTPRRRRP_ 0 0 0 REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF REV__ENST00000301923.13_2_22:40726871-40727081:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2250366210938 3 351.224703 1050.65228 NaN NaN NaN NaN NaN NaN NaN 14.523 1 14.523 14.023 15.023 0 0 0 0 0.97444 1 6910 6910 1.6526 0.58116 1 + 37918 25325 25349 25836 44504 44504 0.12897890887961694 LTPSQKFLH 9 Unmodified _LTPSQKFLH_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000320580.8_1_11:66011432-66012044:+|nuORF nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5469360351562 3 357.537953 1069.59203 0.16405 5.8654E-05 -0.13204 -4.7209E-05 0.032009 1.1445E-05 357.53809321702306 40.978 0.40485 40.976 40.731 41.136 -0.0017929 40 19 3 0 0 0 0.21798 1 21810 21810 0.26902 0 1 5797900 37919 16395 25350 25837 44505 44505 0.06001735714221468 LTPSTVQPQHK 11 Unmodified _LTPSTVQPQHK_ 0 0 0 REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF REV__ENST00000343505.9_2_6:138768140-138794549:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5630187988281 3 412.562938 1234.66699 NaN NaN NaN NaN NaN NaN NaN 18.938 1 18.938 18.438 19.438 0 0 0 0 0.94165 1 9446 9446 1.3296 0.87513 1 + 37920 25736 25351 25838 44506 44506 0.05903873454803943 LTPVCPRSPNR 11 Unmodified _LTPVCPRSPNR_ 0 0 0 ENST00000393931.7_1_17:39911314-39911869:-|nuORF ENST00000393931.7_1_17:39911314-39911869:-|nuORF ENST00000393931.7_1_17:39911314-39911869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2269897460938 3 413.892401 1238.65538 -0.097857 -4.0502E-05 -0.12554 -5.1958E-05 -0.22339 -9.2461E-05 413.8924040591818 17.186 0.11852 17.191 17.122 17.241 0.0050564 15 8 2 0 0 0 0.7187 1 8648 8648 1.0136 0 1 1371200 37921 12721 25352 25839 44507 44507 0.04559353159811508 LTPVIAAL 8 Unmodified _LTPVIAAL_ 0 0 0 AluSz6_dup29664|chr11:57605301-57605529:-|2.392095416380388|0.3820210182941402|2.65|179.0|6|3|sense AluSz6_dup29664|chr11:57605301-57605529:-|2.392095416380388|0.3820210182941402|2.65|179.0|6|3|sense AluSz6_dup29664|chr11:57605301-57605529:-|2.392095416380388|0.3820210182941402|2.65|179.0|6|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2586059570312 2 399.260197 796.50584 NaN NaN NaN NaN NaN NaN NaN 52.522 1 52.088 51.588 52.588 -0.43367 0 0 0 0.95607 1 28377 28377 9.3474 0 1 37922 28 25353 25840 44508 44508 0.09944775879523604 LTPVPDSH 8 Unmodified _LTPVPDSH_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.4403076171875 1 865.441409 864.434132 -0.50411 -0.00043628 0.56666 0.00049041 0.062545 5.4129E-05 865.4418190312653 48.527 0.16588 48.527 48.452 48.618 0 11 7 2 0 0 0 0.24071 1 26627 26627 63.563 0 1 1327800 37923 989 25354 25841 44509 44509 -0.0035076354499778972 LTPYGINPL 9 Unmodified _LTPYGINPL_ 0 0 0 ENST00000456324.5_1_19:36726812-36726860:+|nuORF ENST00000456324.5_1_19:36726812-36726860:+|nuORF ENST00000456324.5_1_19:36726812-36726860:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.280029296875 2 494.279118 986.543683 1.1865 0.00058648 -0.96031 -0.00047466 0.22624 0.00011182 494.2787837863968 89.495 0.82626 83.319 83.022 83.848 -6.1757 134 45 4 0 0 0 0.30562 1 59206 59206 16.942 0 1 97650000 37924 13597 25355 25842 44510 44510 0.04987242074309961 LTQEEFDEEE 10 Unmodified _LTQEEFDEEE_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.993896484375 2 634.76188 1267.50921 -0.33233 -0.00021095 0.16898 0.00010726 -0.16335 -0.00010369 634.7621043893438 56.234 0.22988 56.165 56.036 56.266 -0.068737 19 11 2 0 0 0 0.23693 1 30628 30628 3.2813 0 1 9056700 + 37925 21892 25356 25843 44511 44511 -0.11384715385770505 LTQEEIYLLI 10 Unmodified _LTQEEIYLLI_ 0 0 0 ENST00000426868.6_1_13:38211042-38213329:-|nuORF ENST00000426868.6_1_13:38211042-38213329:-|nuORF ENST00000426868.6_1_13:38211042-38213329:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2369079589844 3 412.235828 1233.68566 1.3735 0.00056619 1.1923 0.00049149 2.5657 0.0010577 412.2362914845015 86.353 0.87926 80.177 79.709 80.588 -6.1757 130 47 3 0 0 0 0.22922 2 57058 56936;57058 31.636 12.01 1 151510000 37926 13185 25357 25844 44512;44513 44513 0.07815990305994092 LTQFQQLLL 9 Unmodified _LTQFQQLLL_ 0 0 0 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 REV__nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.3264770507812 2 552.326599 1102.63865 0.60803 0.00033583 -0.1742 -9.6213E-05 0.43383 0.00023962 552.3264118435613 74.74 0.37948 74.74 74.56 74.94 0 48 17 4 0 0 0 0.12424 1 41651 41651 30.637 3.0077 1 6701900 + 37927 24140 25358 25845 44514 44514 0.09143175545546 LTQHLAASP 9 Unmodified _LTQHLAASP_ 0 0 0 ENST00000412493.1_1_Y:17659176-17661596:+|nuORF;ENSG00000101846|ENST00000674429|STS;nc|ENSG00000101846|P08842|STS ENST00000412493.1_1_Y:17659176-17661596:+|nuORF ENST00000412493.1_1_Y:17659176-17661596:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2573547363281 2 469.258717 936.50288 0.80096 0.00037586 -1.1676 -0.00054791 -0.36664 -0.00017205 469.2581270376616 49.791 0.4956 44.252 44.05 44.546 -5.5391 72 31 3 0 0 0 0.1773 1 31052 31052 25.399 4.9457 1 65513000 37928 1994 25359 25846 44515 44515 0.03208900754691513 LTQISLEW 8 Unmodified _LTQISLEW_ 0 0 0 REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF REV__ENST00000241527.10_1_2:242035813-242036773:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2698059082031 2 495.26875 988.522947 -0.006589 -3.2633E-06 0.12022 5.954E-05 0.11363 5.6277E-05 495.2691831570857 76.745 0.23624 76.265 76.177 76.413 -0.47945 16 10 2 0 0 0 0.70294 1 42037 42037 16.942 0 1 862780 + 37929 24843 25360 25847 44516 44516 0.02822651694657452 LTQLEEEQH 9 Unmodified _LTQLEEEQH_ 0 0 0 REV__ENSG00000166261|ENST00000530393|ZNF202 REV__ENSG00000166261|ENST00000530393|ZNF202 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.3035888671875 2 563.772385 1125.53022 1.3571 0.00076511 4.3103 0.00243 5.6674 0.0031952 564.2760257719581 100.75 0.13229 94.575 94.503 94.635 -6.1757 23 9 4 0 0 0 0.14225 1 67458 67458 30.637 3.7529 1 31041000 + 37930 22097 25361 25848 44517 44517 -0.027526604955710354 LTQLPIHKP 9 Unmodified _LTQLPIHKP_ 0 0 0 REV__ENSG00000153208|ENST00000295408|MERTK REV__ENSG00000153208|ENST00000295408|MERTK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2615966796875 2 523.821484 1045.62842 0.42042 0.00022022 0.11223 5.879E-05 0.53265 0.00027901 523.8216632389938 68.261 0.22783 68.286 68.188 68.416 0.025154 21 11 2 0 0 0 0.18482 1 37568 37568 13.042 6.3193 1 2442900 + 37931 21160 25362 25849 44518 44518 0.10742612610920332 LTQPTSVSF 9 Unmodified _LTQPTSVSF_ 0 0 0 REV__ENSG00000149506|ENST00000278853|ZP1 REV__ENSG00000149506|ENST00000278853|ZP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.25830078125 2 490.258382 978.502212 0.53394 0.00026177 -0.27786 -0.00013622 0.25609 0.00012555 490.2581824546453 66.872 0.57523 60.696 60.428 61.003 -6.1757 92 32 4 0 0 0 0.07916 1 43386 43386 37.974 7.3375 1 150380000 + 37932 21001 25363 25850 44519 44519 0.012100613150096251 LTQQLSETL 9 Unmodified _LTQQLSETL_ 0 0 0 REV__ENSG00000175985|ENST00000322564|PLEKHD1 REV__ENSG00000175985|ENST00000322564|PLEKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2847290039062 2 516.782222 1031.54989 1.11 0.00057361 3.7476 0.0019367 4.8576 0.0025103 516.7848259966983 100.45 0.14282 94.271 94.187 94.33 -6.1757 13 8 2 0 0 0 0.1773 1 67184 67184 25.399 1.3787 1 27580000 + 37933 22902 25364 25851 44520 44520 0.035377155151991246 LTQQPDLLL 9 Unmodified _LTQQPDLLL_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS AL20221201_MKP_PDAC_01 4 520.7999267578125 2 520.802957 1039.59136 NaN NaN NaN NaN NaN NaN NaN 100.72 1 94.544 94.044 95.044 -6.1757 0 0 0 0.26667 1 67430 67430 26.884 2.8631 1 + 37934 22278 25365 25852 44521 44521 0.07314896274510829 LTQQYKYHWN 10 Unmodified _LTQQYKYHWN_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3;REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.0071411132812 3 460.894688 1379.66223 0.12818 5.9076E-05 -2.3407 -0.0010788 -2.2125 -0.0010197 460.8938219657929 29.837 0.26146 29.868 29.734 29.995 0.030104 23 9 4 0 0 0 0.23973 1 15651 15651 3.0723 1.6171 1 3033900 + 37935 20496;20157 25366 25853 44522 44522 -0.012410106879542582 LTQTALDYI 9 Unmodified _LTQTALDYI_ 0 0 0 REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2803955078125 2 519.279315 1036.54408 0.28016 0.00014548 -0.81932 -0.00042546 -0.53916 -0.00027997 519.2788596809597 62.289 0.44256 62.289 62.044 62.486 0 98 28 5 0 0 0 0.036857 1 34654 34654 51.63 9.5352 1 99554000 + 37936 19592 25367 25854 44523 44523 0.02726617003509091 LTQTALDYI 9 Unmodified _LTQTALDYI_ 0 0 0 REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2799682617188 2 519.279315 1036.54408 0.89901 0.00046683 -3.1607 -0.0016413 -2.2617 -0.0011745 519.279214089525 70.048 0.71847 63.872 63.544 64.262 -6.1757 109 40 4 0 0 0 0.032796 3 45615 45615;45733;45865 53.833 19.73 1 546980000 + 37937 19592 25367 25854 44524;44525;44526 44524 0.02726617003509091 LTQTALDYI 9 Unmodified _LTQTALDYI_ 0 0 0 REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.279315 1036.54408 0.45591 0.00023674 -0.90448 -0.00046968 -0.44857 -0.00023293 519.2788055027635 62.788 0.96044 62.302 61.833 62.793 -0.48617 -0.0065505 7.3333E-06 NaN 51.63 127 46 6 NaN NaN NaN NaN 0 NaN NaN 0 189570000 + 37938 19592 25367 25854 0.02726617003509091 LTQTALDYI 9 Unmodified _LTQTALDYI_ 0 0 0 REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF REV__ENST00000494720.5_1_2:219129258-219130297:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.279315 1036.54408 0.30578 0.00015879 -1.1544 -0.00059947 -0.84864 -0.00044068 519.2788941473208 62.367 0.25569 62.334 62.239 62.495 -0.032787 0.025625 -0.00025225 NaN 51.63 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 13114000 + 37939 19592 25367 25854 0.02726617003509091 LTRADREL 8 Unmodified _LTRADREL_ 0 0 0 REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2751159667969 2 487.274898 972.535243 0.37163 0.00018108 0.21477 0.00010465 0.58639 0.00028573 487.27445369469007 50.654 0.22758 50.654 50.477 50.704 0 18 10 2 0 0 0 0.79783 1 27928 27928 7.9102 0.62092 1 1981000 + 37940 27316 25368 25855 44527 44527 0.04787688157693992 LTRADREL 8 Unmodified _LTRADREL_ 0 0 0 REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF REV__ENST00000461347.5_1_2:232319904-232323320:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 487.274898 972.535243 0.37163 0.00018108 0.21477 0.00010465 0.58639 0.00028573 487.27445369469007 50.654 0.22758 50.654 50.477 50.704 0 0 0 NaN 7.9102 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1981000 + 37941 27316 25368 25855 0.04787688157693992 LTREVKQYLYK 11 Unmodified _LTREVKQYLYK_ 0 0 0 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2339782714844 4 360.960689 1439.81365 0.24781 8.945E-05 -1.3662 -0.00049315 -1.1184 -0.0004037 360.96042231295036 52.055 0.25498 51.996 51.772 52.027 -0.058918 16 11 2 0 0 0 0.30592 1 28076 28076 1.0136 0.60531 1 834620 + 37942 21006 25369 25856 44528 44528 0.1113355061988841 LTRGDRLL 8 Unmodified _LTRGDRLL_ 0 0 0 REV__ENSG00000175324|ENST00000311351|LSM1 REV__ENSG00000175324|ENST00000311351|LSM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7908935546875 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.5284 1 63490 63490 32.117 1.8922 1 250360000 + 37943 22864 25370 25857 44529 44529 0.08748582400005489 LTRKPQSLTFS 11 Unmodified _LTRKPQSLTFS_ 0 0 0 ENST00000467811.5_1_20:50704880-50715019:-|nuORF ENST00000467811.5_1_20:50704880-50715019:-|nuORF ENST00000467811.5_1_20:50704880-50715019:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9121704101562 3 426.578588 1276.71394 0.0038683 1.6501E-06 1.2433 0.00053036 1.2472 0.00053201 426.5790980930661 30.063 0.38782 30.093 29.868 30.255 0.030106 24 15 2 0 0 0 0.70705 1 15665 15665 3.5927 0.52041 1 2540000 37944 13789 25371 25858 44530 44530 0.08664733005934977 LTRLTRHTFR 10 Unmodified _LTRLTRHTFR_ 0 0 0 ENSG00000137507|ENST00000260061|LRRC32 ENSG00000137507|ENST00000260061|LRRC32 ENSG00000137507|ENST00000260061|LRRC32 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7805786132812 3 434.258072 1299.75239 1.3853 0.00060157 2.3698 0.0010291 3.7551 0.0016307 434.2585899209717 35.798 0.34526 31.605 31.425 31.77 -4.1928 43 21 3 0 0 0 0.23999 1 20793 20793 1.4551 0.12547 1 8369700 37945 4943 25372 25859 44531 44531 0.11450083431100211 LTRNFVLY 8 Unmodified _LTRNFVLY_ 0 0 0 REV__ENST00000447221.1_1_9:139621222-139621420:-|nuORF REV__ENST00000447221.1_1_9:139621222-139621420:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.292724609375 2 513.292559 1024.57057 1.1838 0.00060762 -0.62974 -0.00032324 0.55404 0.00028438 513.2920843953023 64.133 0.49492 64.122 63.803 64.298 -0.010536 76 24 5 0 0 0 0.60622 1 35153 35153 25.399 2.663 1 42376000 + 37946 27156 25373 25860 44532 44532 0.05926350685513171 LTRNLSYLF 9 Unmodified _LTRNLSYLF_ 0 0 0 REV__ENSG00000140527|ENST00000268130|WDR93 REV__ENSG00000140527|ENST00000268130|WDR93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2137756347656 3 376.213358 1125.61824 -0.026004 -9.783E-06 0.91831 0.00034548 0.8923 0.0003357 376.2136671543296 55.448 1.0575 55.379 54.744 55.801 -0.068741 109 53 5 0 0 0 0.5636 1 30060 30060 3.5871 1.5011 1 21207000 + 37947 20481 25374 25861 44533 44533 0.06046004885683942 LTRQPLTA 8 Unmodified _LTRQPLTA_ 0 0 0 REV__ENSG00000177103|ENST00000651296|DSCAML1 REV__ENSG00000177103|ENST00000651296|DSCAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2698669433594 2 450.269084 898.523616 0.57273 0.00025788 -1.0883 -0.00049001 -0.51554 -0.00023213 450.26892089148765 29.8 0.17723 29.719 29.691 29.868 -0.080429 13 7 2 0 0 0 0.67686 1 15465 15465 19.257 2.1441 1 3740400 + 37948 22964 25375 25862 44534 44534 0.07029491134369437 LTRQPLTA 8 Unmodified _LTRQPLTA_ 0 0 0 REV__ENSG00000177103|ENST00000651296|DSCAML1 REV__ENSG00000177103|ENST00000651296|DSCAML1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 450.269084 898.523616 -0.24991 -0.00011253 0.1864 8.393E-05 -0.063508 -2.8596E-05 450.2689426790645 29.815 0.17035 29.815 29.76 29.931 0 0.047897 0.00065871 NaN 19.257 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2507000 + 37949 22964 25375 25862 0.07029491134369437 LTRQPLTA 8 Unmodified _LTRQPLTA_ 0 0 0 REV__ENSG00000177103|ENST00000651296|DSCAML1 REV__ENSG00000177103|ENST00000651296|DSCAML1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 450.269084 898.523616 0.57273 0.00025788 -1.0883 -0.00049001 -0.51554 -0.00023213 450.26892089148765 29.8 0.17723 29.719 29.691 29.868 -0.080429 -0.047897 -0.00048918 NaN 19.257 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3740400 + 37950 22964 25375 25862 0.07029491134369437 LTRRHHCRKC 10 Unmodified _LTRRHHCRKC_ 0 0 0 ENSG00000166289|ENST00000436066|PLEKHF1 ENSG00000166289|ENST00000436066|PLEKHF1 ENSG00000166289|ENST00000436066|PLEKHF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.676513671875 2 655.345674 1308.6768 NaN NaN NaN NaN NaN NaN NaN 20.835 1 20.835 20.335 21.335 0 0 0 0 1.0019 1 10504 10504 0.45834 0 1 37951 7466 25376 25863 44535 44535 0.03480459707520822 LTRSPNGR 8 Unmodified _LTRSPNGR_ 0 0 0 REV__ENST00000481736.5_1_1:24124993-24127224:-|nuORF REV__ENST00000481736.5_1_1:24124993-24127224:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.7557067871094 2 450.754133 899.493713 NaN NaN NaN NaN NaN NaN NaN 26.202 1 23.251 22.751 23.751 -2.9511 0 0 0 0.59568 1 14415 14415 34.402 0.29928 1 + 37952 27285 25377 25864 44536 44536 0.03994552189044498 LTRSRYPL 8 Unmodified _LTRSRYPL_ 0 0 0 ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF ENST00000476372.1_1_11:293373-294746:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.296875 2 503.295633 1004.57671 NaN NaN NaN NaN NaN NaN NaN 55.606 1 55.538 55.038 56.038 -0.068737 0 0 0 0.95973 1 30223 30223 8.5933 1.8701 1 37953 13981 25378 25865 44537 44537 0.07460868917041807 LTRTAHVIA 9 Unmodified _LTRTAHVIA_ 0 0 0 REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF;REV__ENSG00000163464|ENST00000295683|CXCR1 REV__ENST00000439871.1_1_2:218925303-218925771:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.2968139648438 2 491.295633 980.576714 NaN NaN NaN NaN NaN NaN NaN 40.967 1 36.359 35.859 36.859 -4.6079 0 0 0 0.22437 1 24536 24536 29.082 2.8134 1 + 37954 27067;21767 25379 25866 44538 44538 0.08564868917028434 LTRVKPWFI 9 Unmodified _LTRVKPWFI_ 0 0 0 REV__ENST00000267859.7_1_15:59955471-59955648:-|nuORF REV__ENST00000267859.7_1_15:59955471-59955648:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.237548828125 3 387.237726 1158.69135 NaN NaN NaN NaN NaN NaN NaN 20.878 1 18.185 17.685 18.685 -2.693 0 0 0 0.82283 1 11143 11143 4.897 0.70751 1 + 37955 25114 25380 25867 44539 44539 0.11835178398973767 LTSAPSPTPG 10 Unmodified _LTSAPSPTPG_ 0 0 0 ENST00000589123.5_2_19:3381710-3381962:+|nuORF ENST00000589123.5_2_19:3381710-3381962:+|nuORF ENST00000589123.5_2_19:3381710-3381962:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.4813842773438 1 927.478188 926.470912 0.74552 0.00069146 -1.3585 -0.00126 -0.61296 -0.00056851 927.4768141693186 42.14 0.47473 37.455 37.173 37.648 -4.6846 69 29 3 0 0 0 0.31022 3 25241 25241;25387;25531 26.884 3.7352 1 32132000 37956 15661 25381 25868 44540;44541;44542 44540 0.0047348828089752715 LTSDEPHLLF 10 Unmodified _LTSDEPHLLF_ 0 0 0 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.30322265625 2 586.303321 1170.59209 -0.73445 -0.00043061 0.88045 0.00051621 0.146 8.5601E-05 586.3032460195974 77.497 0.32143 77.015 76.868 77.189 -0.4826 40 15 3 0 0 0 0.2178 1 42395 42395 32.305 6.9062 1 6848200 + 37957 29945 25382 25869 44543 44543 0.013616909235679486 LTSDSRRR 8 Unmodified _LTSDSRRR_ 0 0 0 REV__ENSG00000163904|ENST00000296257|SENP2 REV__ENSG00000163904|ENST00000296257|SENP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5448608398438 1 990.543917 989.53664 0.0019962 1.9773E-06 -0.98585 -0.00097653 -0.98385 -0.00097455 990.5434824314573 79.293 0.30353 79.293 79.142 79.446 0 23 12 3 0 0 0 0.80676 1 44074 44074 2.5775 0 1 1200200 + 37958 21831 25383 25870 44544 44544 0.041453222464724604 LTSEDMKVLDG 11 Unmodified _LTSEDMKVLDG_ 0 0 0 ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000198610|ENST00000263126|AKR1C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5346984863281 3 403.200678 1206.5802 0.10408 4.1963E-05 -2.9878 -0.0012047 -2.8838 -0.0011627 403.53446205719575 61.601 0.18978 61.113 61.032 61.222 -0.48764 16 8 3 0 0 0 0.73992 1 33607 33607 0.50596 0 1 711640 37959 10113 25384 25871 44545 44545 -0.014822938819406772 LTSFMLRHF 9 Unmodified _LTSFMLRHF_ 0 0 0 REV__ENST00000439248.5_1_22:43464548-43465849:-|nuORF REV__ENST00000439248.5_1_22:43464548-43465849:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.307373046875 2 576.305144 1150.59573 -0.044664 -2.574E-05 1.5848 0.00091333 1.5401 0.00088759 576.3063840762907 36.45 0.28462 36.471 36.295 36.58 0.021545 18 12 2 0 0 0 0.49272 1 19316 19316 7.9102 0 1 2632800 + 37960 27060 25385 25872 44546 44546 0.02646082216438117 LTSGAWPK 8 Unmodified _LTSGAWPK_ 0 0 0 REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2378540039062 2 430.237253 858.459953 0.37619 0.00016185 0.90509 0.0003894 1.2813 0.00055125 430.2377121305165 74.529 0.20177 74.575 74.481 74.682 0.045967 15 8 2 0 0 0 0.63229 1 41111 41111 23.148 5.0134 1 1461500 + 37961 22737 25386 25873 44547 44547 0.025061306972816055 LTSGAWPK 8 Unmodified _LTSGAWPK_ 0 0 0 REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF REV__ENST00000459892.5_1_2:26531956-26538428:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2382202148438 2 430.237253 858.459953 NaN NaN NaN NaN NaN NaN NaN 96.533 1 90.357 89.857 90.857 -6.1757 0 0 0 0.83301 1 63974 63974 21.747 3.6117 1 + 37962 22737 25386 25873 44548 44548 0.025061306972816055 LTSHILAL 8 Unmodified _LTSHILAL_ 0 0 0 REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF REV__ENST00000591348.5_1_1:16802327-16812083:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2686767578125 2 434.268553 866.522553 0.96096 0.00041732 -0.35303 -0.00015331 0.60793 0.000264 434.2684265068411 83.036 0.79524 76.86 76.458 77.253 -6.1757 118 43 4 0 0 0 0.35156 1 54399 54399 49.669 0 1 138710000 + 37963 29161 25387 25874 44549 44549 0.08395276765452309 LTSIPVSI 8 Unmodified _LTSIPVSI_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20221201_MKP_PDAC_01 4 415.2551574707031 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 40.3 1 35.771 35.271 36.271 -4.5294 0 0 0 0.47897 1 24051 24051 42.095 6.0504 1 37964 7922 25388 25875 44550 44550 0.07456168154271836 LTSKCPFLI 9 Unmodified _LTSKCPFLI_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2943725585938 2 511.291171 1020.56779 0.88501 0.0004525 0.29678 0.00015174 1.1818 0.00060424 511.29039236548385 68.571 0.25261 68.596 68.54 68.793 0.025146 15 11 2 0 0 0 0.042911 1 37672 37672 48.346 0 1 3039800 37965 1608 25389 25876 44551 44551 0.05832759236352558 LTSKFEKTL 9 Unmodified _LTSKFEKTL_ 0 0 0 REV__ENST00000461039.1_1_1:64021028-64034235:+|nuORF REV__ENST00000461039.1_1_1:64021028-64034235:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8114013671875 2 533.810782 1065.60701 0.52303 0.0002792 0.56718 0.00030276 1.0902 0.00058197 533.8109703444098 43.18 0.18287 43.164 43.063 43.246 -0.015671 12 8 2 0 0 0 0.42049 1 23150 23150 7.2892 0 1 4371300 + 37966 24131 25390 25877 44552 44552 0.07683182791583931 LTSKFEKTL 9 Unmodified _LTSKFEKTL_ 0 0 0 REV__ENST00000461039.1_1_1:64021028-64034235:+|nuORF REV__ENST00000461039.1_1_1:64021028-64034235:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.810782 1065.60701 0.52303 0.0002792 0.56718 0.00030276 1.0902 0.00058197 533.8109703444098 43.18 0.18287 43.164 43.063 43.246 -0.015671 0.16669 8.2316E-05 NaN 7.2892 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4371300 + 37967 24131 25390 25877 0.07683182791583931 LTSPWAGK 8 Unmodified _LTSPWAGK_ 0 0 0 REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.467041015625 1 859.467229 858.459953 0.17694 0.00015208 -0.65553 -0.0005634 -0.47858 -0.00041133 859.4668860316986 75.122 0.28619 74.645 74.495 74.781 -0.47714 22 12 2 0 0 0 0.63229 1 41178 41178 23.148 23.148 1 4929900 + 37968 18137 25391 25878 44553 44553 0.025061306972816055 LTSPWAGK 8 Unmodified _LTSPWAGK_ 0 0 0 REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 859.4663696289062 1 859.467229 858.459953 0.50634 0.00043518 0.43564 0.00037442 0.94198 0.0008096 859.4678509114209 74.531 0.29312 74.577 74.458 74.751 0.045967 21 12 2 0 0 0 0.63229 2 41060 41060;41163 23.148 0 1 3634800 + 37969 18137 25391 25878 44554;44555 44554 0.025061306972816055 LTSPWAGK 8 Unmodified _LTSPWAGK_ 0 0 0 REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF REV__ENST00000488395.1_1_20:57572656-57581383:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.468017578125 1 859.467229 858.459953 1.1655 0.0010017 -0.080026 -6.878E-05 1.0855 0.00093292 859.4671550025517 96.555 0.42245 90.379 90.15 90.572 -6.1757 60 24 3 0 0 0 0.55032 2 64000 63875;64000 30.225 0 1 66490000 + 37970 18137 25391 25878 44556;44557 44557 0.025061306972816055 LTSRNYFLVN 10 Unmodified _LTSRNYFLVN_ 0 0 0 nc|ENSG00000292357|P15509-2|CSF2RA;nc|ENSG00000292357|P15509-6|CSF2RA;nc|ENSG00000292357|P15509-8|CSF2RA;nc|ENSG00000292357|P15509-4|CSF2RA;nc|ENSG00000292357|P15509-3|CSF2RA;nc|ENSG00000292357|P15509-5|CSF2RA;ENSG00000198223|ENST00000381529|CSF2RA;nc|ENSG00000292357|P15509-7|CSF2RA nc|ENSG00000292357|P15509-2|CSF2RA nc|ENSG00000292357|P15509-2|CSF2RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5552368164062 3 409.555784 1225.64552 -0.18104 -7.4145E-05 -0.56757 -0.00023245 -0.74861 -0.0003066 409.55538794092314 16.639 0.085001 16.645 16.608 16.693 0.0050545 7 4 2 0 0 0 0.713 1 8359 8359 1.4551 0.38366 1 687860 37971 16647 25392 25879 44558 44558 0.04172488426070231 LTSSLMNIQHF 11 Unmodified _LTSSLMNIQHF_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MSMS AL20221201_MKP_PDAC_01 4 430.8884582519531 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 41.705 1 37.097 36.597 37.597 -4.6079 0 0 0 0.77961 1 25084 25084 7.0371 4.7844 1 37972 2805 25393 25880 44559 44559 0.010571113458127002 LTSVCYLDTF 10 Unmodified _LTSVCYLDTF_ 0 0 0 ENST00000382044.8_1_15:43784217-43784558:-|nuORF ENST00000382044.8_1_15:43784217-43784558:-|nuORF ENST00000382044.8_1_15:43784217-43784558:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2776489257812 2 581.278457 1160.54236 0.32879 0.00019112 -1.5157 -0.00088106 -1.1869 -0.00068995 581.2775436835586 99.085 0.2177 98.892 98.752 98.97 -0.19321 18 7 3 0 0 0 0.60623 1 54090 54090 10.824 4.1008 1 2139900 37973 12624 25394 25881 44560 44560 -0.03148760076760482 LTSVFTRQY 9 Unmodified _LTSVFTRQY_ 0 0 0 REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.7706909179688 2 557.798206 1113.58186 1.1867 0.00066195 -0.69744 -0.00038903 0.48928 0.00027292 557.7981930914008 63.676 0.24059 57.501 57.355 57.595 -6.1757 19 12 2 0 0 0 0.12771 1 41113 41113 34.402 9.0024 1 6801800 + 37974 19924 25395 25882 44561 44561 0.029611279890104925 LTSVIQIRH 9 Unmodified _LTSVIQIRH_ 0 0 0 REV__ENST00000485912.1_1_3:183960304-183960812:-|nuORF REV__ENST00000485912.1_1_3:183960304-183960812:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2066345214844 3 356.217102 1065.62948 0.24251 8.6386E-05 3.7854 0.0013484 4.0279 0.0014348 356.2189923094511 40.835 0.21921 40.833 40.731 40.95 -0.0017929 16 10 2 0 0 0 0.21404 1 21848 21848 5.2969 0.96765 1 1117500 + 37975 27789 25396 25883 44562 44562 0.09928826979853511 LTSYLCTLLI 10 Unmodified _LTSYLCTLLI_ 0 0 0 REV__ENST00000373719.7_1_X:70793676-70793763:+|nuORF REV__ENST00000373719.7_1_X:70793676-70793763:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3221435546875 2 570.322668 1138.63078 1.0914 0.00062247 1.611 0.0009188 2.7025 0.0015413 570.3243113105175 94.967 0.16064 88.792 88.693 88.854 -6.1757 17 8 3 0 0 0 0.063761 1 62885 62885 54.774 0 1 7703500 + 37976 26158 25397 25884 44563 44563 0.06701280233755824 LTTAPRGGWY 10 Unmodified _LTTAPRGGWY_ 0 0 0 ENST00000370092.7_1_X:153051329-153051590:-|nuORF ENST00000370092.7_1_X:153051329-153051590:-|nuORF ENST00000370092.7_1_X:153051329-153051590:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.740478515625 2 561.290548 1120.56654 1.1941 0.00067023 -0.14461 -8.1169E-05 1.0495 0.00058907 561.2905186614747 60.357 0.49443 54.242 53.983 54.478 -6.1147 63 25 3 0 0 0 0.22811 1 38894 38894 6.2058 0 1 58930000 37977 12322 25398 25885 44564 44564 0.01108261191825477 LTTDIIEKY 9 Unmodified _LTTDIIEKY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.3003540039062 2 548.300247 1094.58594 -0.40908 -0.0002243 0.62449 0.00034241 0.21541 0.00011811 548.3005933280197 48.592 0.34752 48.592 48.413 48.761 0 50 16 4 0 0 0 0.0082548 2 26628 26628;26748 96.367 21.438 1 55717000 37978 8967 25399 25886 44565;44566 44565 0.04243172692076769 LTTDIIEKY 9 Unmodified _LTTDIIEKY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.29833984375 2 548.300247 1094.58594 0.231 0.00012666 -0.37909 -0.00020786 -0.1481 -8.1201E-05 548.2999300898708 48.926 0.3037 48.554 48.369 48.673 -0.37172 37 15 3 0 0 0 0.011291 1 26239 26239 76.825 20.648 1 10758000 37979 8967 25399 25886 44567 44567 0.04243172692076769 LTTDIIEKY 9 Unmodified _LTTDIIEKY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2993774414062 2 548.300247 1094.58594 0.32314 0.00017718 -0.0015942 -8.7412E-07 0.32154 0.0001763 548.300493560705 48.605 0.21392 48.561 48.395 48.609 -0.04369 14 10 2 0 0 0 0.029718 1 26228 26228 55.503 7.7541 1 1183300 37980 8967 25399 25886 44568 44568 0.04243172692076769 LTTDIIEKY 9 Unmodified _LTTDIIEKY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3009033203125 2 548.300247 1094.58594 1.0533 0.00057755 -0.85861 -0.00047078 0.19473 0.00010677 548.2994364751138 55.058 0.68359 49.137 48.903 49.587 -5.9211 98 42 3 0 0 0 0.0082548 3 35002 34873;35002;35151 96.367 31.132 1 142300000 37981 8967 25399 25886 44569;44570;44571 44570 0.04243172692076769 LTTDYNNEM 9 Unmodified _LTTDYNNEM_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.728759765625 2 550.731871 1099.44919 NaN NaN NaN NaN NaN NaN NaN 17.764 1 17.764 17.264 18.264 0 0 0 0 0.84737 1 8780 8780 1.8442 1.0506 1 37982 778 25400 25887 44572 44572 -0.09655684529980135 LTTHKFIH 8 Unmodified _LTTHKFIH_ 0 0 0 nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7850341796875 2 498.784902 995.55525 0.30922 0.00015423 1.6212 0.00080861 1.9304 0.00096285 498.7855748511329 77.676 0.28588 77.676 77.547 77.833 0 20 15 2 0 0 0 0.79669 1 43164 43164 8.5933 5.7041 1 921790 37983 6723 25401 25888 44573 44573 0.05729483888330833 LTTHKFIH 8 Unmodified _LTTHKFIH_ 0 0 0 nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7853088378906 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 77.653 1 77.703 77.203 78.203 0.05011 0 0 0 0.97444 1 42863 42863 2.8892 0 1 37984 6723 25401 25888 44574 44574 0.05729483888330833 LTTHKFIH 8 Unmodified _LTTHKFIH_ 0 0 0 nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENSG00000160352|ENST00000456283|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 nc|ENSG00000160352|Q96N38-3|ZNF714 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.784902 995.55525 0.19079 9.5164E-05 1.8581 0.0009268 2.0489 0.001022 498.78569612055173 77.476 0.92457 77.527 76.824 77.748 0.05011 0.010819 -5.7636E-05 NaN 8.5933 88 38 3 NaN NaN NaN NaN 0 NaN NaN 0 11146000 37985 6723 25401 25888 0.05729483888330833 LTTKRFLEL 9 Unmodified _LTTKRFLEL_ 0 0 0 ENSG00000101412|ENST00000343380|E2F1 ENSG00000101412|ENST00000343380|E2F1 ENSG00000101412|ENST00000343380|E2F1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3037719726562 2 560.839874 1119.66519 1.0054 0.00056385 0.56035 0.00031427 1.5657 0.00087811 560.8401694870619 49.959 0.28149 49.566 49.451 49.732 -0.3923 29 13 3 0 0 0 0.21021 1 26841 26841 7.2892 0.56607 1 3891200 37986 1961 25402 25889 44575 44575 0.11014864436833705 LTTLWFLAL 9 Unmodified _LTTLWFLAL_ 0 0 0 REV__ENST00000294785.9_1_1:160324037-160325488:+|nuORF REV__ENST00000294785.9_1_1:160324037-160325488:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7841796875 2 539.320786 1076.62702 0.17051 9.1959E-05 -4.2875 -0.0023123 -4.117 -0.0022204 539.3182190947591 57.1 0.24105 56.615 56.453 56.694 -0.48554 19 10 2 0 0 0 0.19891 1 30977 30977 11.64 3.7301 1 3273700 + 37987 25257 25403 25890 44576 44576 0.0917697852216861 LTTNQIVLISL 11 Unmodified _LTTNQIVLISL_ 0 0 0 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-3|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5842895507812 3 405.583339 1213.72819 -0.1413 -5.7308E-05 1.2451 0.000505 1.1038 0.00044769 405.5838596334146 34.631 0.25394 34.658 34.52 34.774 0.027401 33 11 4 0 0 0 0.65096 1 18239 18239 8.7518 0 1 11780000 37988 16041 25404 25891 44577 44577 0.12987385434234966 LTTQKEDCF 9 Unmodified _LTTQKEDCF_ 0 0 0 REV__ENSG00000177853|ENST00000316045|ZNF518A REV__ENSG00000177853|ENST00000316045|ZNF518A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7535400390625 2 542.752607 1083.49066 0.23956 0.00013002 -1.987 -0.0010785 -1.7474 -0.00094843 542.7527425463484 75.649 0.48537 75.649 75.369 75.855 0 26 20 2 0 0 0 0.54444 1 42064 42064 4.756 0 1 884050 + 37989 23007 25405 25892 44578 44578 -0.04774503770636329 LTTTPRRRP 9 Unmodified _LTTTPRRRP_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.2057495117188 3 366.556118 1096.64652 1.2116 0.00044411 2.2193 0.0008135 3.4309 0.0012576 366.89207994896765 17.941 0.20043 15.354 15.292 15.492 -2.5866 22 12 2 0 0 0 0.21021 1 9419 9419 4.5289 0 1 1794000 37990 6700 25406 25893 44579 44579 0.1020674758565292 LTVADLADLF 10 Unmodified _LTVADLADLF_ 0 0 0 ENSG00000146414|ENST00000275233|SHPRH ENSG00000146414|ENST00000275233|SHPRH ENSG00000146414|ENST00000275233|SHPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1077.586181640625 1 1077.58265 1076.57538 0.29811 0.00032124 -0.5354 -0.00057693 -0.23729 -0.0002557 1077.58365836148 54.109 0.1801 54.042 53.962 54.142 -0.066936 10 8 2 0 0 0 0.72607 1 29388 29388 0 0 1 1702500 37991 5777 25407 25894 44580 44580 0.04015190037580396 LTVANEPG 8 Unmodified _LTVANEPG_ 0 0 0 REV__nc|ENSG00000174485|Q7Z401|DENND4A REV__nc|ENSG00000174485|Q7Z401|DENND4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.415283203125 1 800.414859 799.407583 0.31292 0.00025047 -0.53982 -0.00043208 -0.2269 -0.00018162 800.4149068831948 38.916 0.41716 38.916 38.66 39.077 0 28 18 2 0 0 0 0.23628 1 20874 20874 64.236 6.765 1 3417000 + 37992 22795 25408 25895 44581 44581 -0.00014452436334977392 LTVCEEQSF 9 Unmodified _LTVCEEQSF_ 0 0 0 REV__ENSG00000167981|ENST00000301744|ZNF597 REV__ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2390747070312 2 528.239332 1054.46411 -0.15004 -7.9256E-05 0.14965 7.905E-05 -0.00039001 -2.0602E-07 528.239306858034 51.653 0.22195 51.219 51.044 51.266 -0.43367 16 11 2 0 0 0 0.39863 1 27884 27884 12.532 0 1 2127000 + 37993 22271 25409 25896 44582 44582 -0.060941926619761944 LTVDVDLQ 8 Unmodified _LTVDVDLQ_ 0 0 0 REV__nc|ENSG00000215568|Q2WGN9|GAB4 REV__nc|ENSG00000215568|Q2WGN9|GAB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7459106445312 2 451.745108 901.475663 0.7243 0.0003272 1.1413 0.00051558 1.8656 0.00084278 451.74564880916256 49.923 0.43906 49.53 49.313 49.753 -0.3923 59 21 4 0 0 0 0.70294 1 26907 26907 16.942 3.4344 1 36785000 + 37994 29942 25410 25897 44583 44583 0.02098372423665751 LTVEAQMPMSL 11 Unmodified _LTVEAQMPMSL_ 0 0 0 REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF REV__ENST00000497331.2_1_1:18688571-18704817:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.81201171875 2 610.306692 1218.59883 1.3539 0.0008263 2.4511 0.0014959 3.805 0.0023222 610.8104851069835 64.21 0.23334 58.034 57.899 58.132 -6.1757 17 11 2 0 0 0 0.53952 1 41634 41634 14.405 0 1 8988500 + 37995 19089 25411 25898 44584 44584 -0.0017245551171072293 LTVEVIFEP 9 Unmodified _LTVEVIFEP_ 0 0 0 REV__ENST00000524061.1_1_8:10645233-10677771:-|nuORF REV__ENST00000524061.1_1_8:10645233-10677771:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7913208007812 2 523.792058 1045.56956 1.0476 0.00054872 -1.5875 -0.00083153 -0.53993 -0.00028281 523.7915194268735 99.323 0.21516 93.148 93.028 93.243 -6.1757 18 13 2 0 0 0 0.042911 1 66115 66115 48.346 1.425 1 68892000 + 37996 28325 25412 25899 44585 44585 0.04860091525961252 LTVGALKI 8 Unmodified _LTVGALKI_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2744445800781 2 407.773471 813.53239 0.057178 2.3316E-05 0.39823 0.00016239 0.4554 0.0001857 407.77357619306633 45.581 0.1965 45.257 45.141 45.337 -0.32425 15 10 2 0 0 0 0.098639 1 24357 24357 100.37 10.945 1 11909000 + 37997 19746 25413 25900 44586 44586 0.11816464770845414 LTVGALKI 8 Unmodified _LTVGALKI_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.7733154296875 2 407.773471 813.53239 1.1958 0.00048762 -0.31544 -0.00012863 0.88037 0.00035899 407.7733749653463 50.525 0.45577 44.986 44.808 45.264 -5.5391 60 28 3 0 0 0 0.17954 2 31647 31647;31783 78.149 0.16506 1 59588000 + 37998 19746 25413 25900 44587;44588 44587 0.11816464770845414 LTVGALKI 8 Unmodified _LTVGALKI_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 407.5180358886719 2 407.773471 813.53239 1.1958 0.00048762 -0.31544 -0.00012863 0.88037 0.00035899 407.7733749653463 50.525 0.45577 44.986 44.808 45.264 -5.5391 60 28 3 0 0 0 8.7369 1 31581 31581 24.021 4.7636 1 59588000 + 37999 19746 25413 25900 44589 44589 0.11816464770845414 LTVGALKI 8 Unmodified _LTVGALKI_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 407.773471 813.53239 0.057178 2.3316E-05 0.39823 0.00016239 0.4554 0.0001857 407.77357619306633 45.581 0.1965 45.257 45.141 45.337 -0.32425 0.13558 0.00048503 NaN 100.37 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 11909000 + 38000 19746 25413 25900 0.11816464770845414 LTVHYVAG 8 Unmodified _LTVHYVAG_ 0 0 0 REV__ENSG00000143344|ENST00000360851|RGL1 REV__ENSG00000143344|ENST00000360851|RGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4676513671875 1 859.467229 858.459953 0.17694 0.00015208 -0.65553 -0.0005634 -0.47858 -0.00041133 859.4668860316986 75.122 0.28619 74.645 74.495 74.781 -0.47714 22 12 2 0 0 0 0.5953 1 41077 41077 26.341 26.341 1 4929900 + 38001 20627 25414 25901 44590 44590 0.025061306972816055 LTVHYVAG 8 Unmodified _LTVHYVAG_ 0 0 0 REV__ENSG00000143344|ENST00000360851|RGL1 REV__ENSG00000143344|ENST00000360851|RGL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 859.467229 858.459953 0.50634 0.00043518 0.43564 0.00037442 0.94198 0.0008096 859.4678509114209 74.531 0.29312 74.577 74.458 74.751 0.045967 -0.033812 0.0005998 NaN 26.341 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3634800 + 38002 20627 25414 25901 0.025061306972816055 LTVNPHESLF 10 Unmodified _LTVNPHESLF_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8035888671875 2 578.803488 1155.59242 -0.19835 -0.00011481 0.56564 0.00032739 0.36729 0.00021259 578.8035645926326 33.075 0.19767 32.916 32.81 33.008 -0.15919 10 7 2 0 0 0 0.66569 1 17271 17271 6.7232 0.99131 1 1120800 + 38003 23115 25415 25902 44591 44591 0.020851106434292888 LTVPDIELY 9 Unmodified _LTVPDIELY_ 0 0 0 REV__ENSG00000261873|ENST00000636752|SMIM36 REV__ENSG00000261873|ENST00000636752|SMIM36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7901000976562 2 531.789515 1061.56448 0.33529 0.0001783 0.039556 2.1035E-05 0.37485 0.00019934 531.7899245496606 82.822 0.41634 82.822 82.585 83.001 0 51 18 4 0 0 0 0.32235 1 45985 45985 23.148 6.2061 1 2231800 + 38004 24587 25416 25903 44592 44592 0.03615787663329684 LTVPKGRAI 9 Unmodified _LTVPKGRAI_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8082275390625 2 477.808377 953.6022 NaN NaN NaN NaN NaN NaN NaN 35.415 1 35.44 34.94 35.94 0.024967 0 0 0 0.32177 1 18720 18720 24.021 2.4836 1 + 38005 18438 25417 25904 44593 44593 0.12354343439471904 LTVPRRCI 8 Unmodified _LTVPRRCI_ 0 0 0 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 ENSG00000135999|ENST00000258484|EPC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2855834960938 2 479.286754 956.558955 NaN NaN NaN NaN NaN NaN NaN 77.7 1 77.7 77.2 78.2 0 0 0 0 0.97348 1 43195 43195 5.7604 0 1 38006 4772 25418 25905 44594 44594 0.07893830390526091 LTVQNIPKNVF 11 Unmodified _LTVQNIPKNVF_ 0 0 0 REV__nc|ENSG00000175224|O75143-4|ATG13 REV__nc|ENSG00000175224|O75143-4|ATG13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3261108398438 2 636.869163 1271.72377 0.44751 0.000285 -0.42672 -0.00027176 0.020791 1.3241E-05 636.868957316708 75.408 0.60458 74.931 74.63 75.235 -0.47714 70 31 3 0 0 0 0.30565 1 41376 41376 1.4819 0 1 3223500 + 38007 22855 25419 25906 44595 44595 0.09877921011297985 LTVRAGEILTI 11 Unmodified _LTVRAGEILTI_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9126281738281 3 395.911568 1184.71287 1.2998 0.00051459 1.249 0.00049451 2.5488 0.0010091 395.91205090454605 20.101 0.22941 17.445 17.294 17.523 -2.6564 34 15 3 0 0 0 0.4121 1 10692 10692 20.871 0 1 5985400 + 38008 23319 25420 25907 44596 44596 0.12790518637052628 LTVSKSEL 8 Unmodified _LTVSKSEL_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7562866210938 2 438.755475 875.496398 0.0066778 2.9299E-06 1.3314 0.00058416 1.3381 0.00058709 438.7559444632243 31.84 0.31742 31.87 31.692 32.009 0.030106 34 14 3 0 0 0 0.46677 1 16670 16670 37.974 11.09 1 31677000 38009 9528 25421 25908 44597 44597 0.05366962803338993 LTVSKSEL 8 Unmodified _LTVSKSEL_ 0 0 0 nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF nc|ENSG00000186976|Q5THR3-5|EFCAB6 nc|ENSG00000186976|Q5THR3-5|EFCAB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7564086914062 2 438.755475 875.496398 0.96248 0.00042229 1.1583 0.0005082 2.1207 0.00093049 438.7560158142496 35.578 0.54762 31.386 31.161 31.709 -4.1928 91 34 4 0 0 0 0.38465 2 20687 20552;20687 46.021 5.6685 1 91985000 38010 9528 25421 25908 44598;44599 44599 0.05366962803338993 LTVSLRWC 8 Unmodified _LTVSLRWC_ 0 0 0 REV__ENST00000534350.5_1_8:146277890-146278751:+|nuORF REV__ENST00000534350.5_1_8:146277890-146278751:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2664794921875 2 489.265487 976.516422 NaN NaN NaN NaN NaN NaN NaN 19.464 1 19.492 18.992 19.992 0.028357 0 0 0 0.97444 1 9814 9814 2.5775 0.51773 1 + 38011 28329 25422 25909 44600 44600 0.02722435262307954 LTVTDQIIS 9 Unmodified _LTVTDQIIS_ 0 0 0 REV__ENSG00000138641|ENST00000402738|HERC3 REV__ENSG00000138641|ENST00000402738|HERC3 MSMS AL20221201_MKP_PDAC_01 4 495.2821655273438 2 495.279315 988.544076 NaN NaN NaN NaN NaN NaN NaN 41.92 1 37.312 36.812 37.812 -4.6079 0 0 0 0.25233 1 25248 25248 27.629 3.6082 1 + 38012 20348 25423 25910 44601 44601 0.04934617003527819 LTVVVDDLRLC 11 Unmodified _LTVVVDDLRLC_ 0 0 0 nc|ENSG00000131584|Q96P50-1|ACAP3;ACAP3|p.L773Gfs*13|1|0.15|ENSG00000131584|chr1:1293866-1293867|-/CGGGTCC|frameshift_variant;ENSG00000131584|ENST00000354700|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF;nc|ENSG00000131584|Q96P50-4|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 MSMS AL20221201_MKP_PDAC_01 4 623.3414916992188 2 623.347206 1244.67986 NaN NaN NaN NaN NaN NaN NaN 54.827 1 48.962 48.462 49.462 -5.8653 0 0 0 0.67092 1 34828 34828 18.146 1.9972 1 38013 7 25424 25911 44602 44602 0.06730568522698377 LTWAGSRP 8 Unmodified _LTWAGSRP_ 0 0 0 ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1 ENST00000488068.5_1_7:143088552-143095662:-|nuORF ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2412719726562 2 444.240327 886.466101 0.077581 3.4465E-05 0.85175 0.00037838 0.92933 0.00041285 444.24064296577734 56.256 0.51506 56.187 55.885 56.4 -0.068737 36 26 2 0 0 0 0.79982 1 30672 30672 6.7232 2.3939 1 7207300 38014 5807 25425 25912 44603 44603 0.018326489288028824 LTWCWIFS 8 Unmodified _LTWCWIFS_ 0 0 0 ENST00000303562.8_1_14:75748398-75748518:+|nuORF ENST00000303562.8_1_14:75748398-75748518:+|nuORF ENST00000303562.8_1_14:75748398-75748518:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2756958007812 2 528.254588 1054.49462 0.54247 0.00028656 -1.2508 -0.00066072 -0.70829 -0.00037416 528.2538727978274 72.583 0.33318 72.107 71.918 72.251 -0.47609 34 15 3 0 0 0 8.7369 1 39636 39636 13.508 0.97634 1 1696600 38015 11598 25426 25913 44604 44604 -0.03044369486292453 LTWDKTPL 8 Unmodified _LTWDKTPL_ 0 0 0 REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF REV__ENST00000593685.5_2_19:40316066-40316243:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2698669433594 2 487.271293 972.528032 NaN NaN NaN NaN NaN NaN NaN 34.854 1 30.758 30.258 31.258 -4.0951 0 0 0 0.83301 1 20142 20142 21.747 0 1 + 38016 29196 25427 25914 44605 44605 0.04066955557277652 LTWQKIMKIL 10 Unmodified _LTWQKIMKIL_ 0 0 0 ENST00000395472.2_1_14:55509742-55509793:+|nuORF ENST00000395472.2_1_14:55509742-55509793:+|nuORF ENST00000395472.2_1_14:55509742-55509793:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3892211914062 2 637.388677 1272.7628 NaN NaN NaN NaN NaN NaN NaN 104.58 1 104.53 104.03 105.03 -0.048737 0 0 0 0.99091 1 58066 58066 1.6526 0 1 38017 12768 25428 25915 44606 44606 0.1373293004135121 LTWTITRLS 9 Unmodified _LTWTITRLS_ 0 0 0 ENST00000368323.7_1_1:155869078-155869165:-|nuORF ENST00000368323.7_1_1:155869078-155869165:-|nuORF ENST00000368323.7_1_1:155869078-155869165:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8168334960938 2 545.816399 1089.61824 0.25073 0.00013685 0.041941 2.2892E-05 0.29267 0.00015975 545.816540818063 39.12 0.25989 39.132 39.021 39.281 0.011452 19 11 2 0 0 0 0.59218 1 20840 20840 1.8442 0 1 909260 38018 12266 25429 25916 44607 44607 0.07702004885709357 LTWTITRLS 9 Unmodified _LTWTITRLS_ 0 0 0 ENST00000368323.7_1_1:155869078-155869165:-|nuORF ENST00000368323.7_1_1:155869078-155869165:-|nuORF ENST00000368323.7_1_1:155869078-155869165:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 545.816399 1089.61824 0.51942 0.00028351 -0.52874 -0.0002886 -0.0093245 -5.0895E-06 545.8159862824702 43.852 0.12408 39.087 38.985 39.109 -4.7648 -0.022361 -0.00020786 NaN 1.8442 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3694400 38019 12266 25429 25916 0.07702004885709357 LTWWDLIGTL 10 Unmodified _LTWWDLIGTL_ 0 0 0 REV__ENST00000429713.6_1_4:119951314-119951356:+|nuORF REV__ENST00000429713.6_1_4:119951314-119951356:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3302001953125 2 609.331882 1216.64921 NaN NaN NaN NaN NaN NaN NaN 32.011 1 32.011 31.511 32.511 0 0 0 0 0.85122 1 16698 16698 10.074 0 1 + 38020 26954 25430 25917 44608 44608 0.04955158199959442 LTYAEEDMGLR 11 Unmodified _LTYAEEDMGLR_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8805236816406 3 433.207944 1296.602 -0.00056409 -2.4437E-07 1.1944 0.0005174 1.1938 0.00051716 433.208316908327 70.031 0.69988 69.552 69.29 69.99 -0.47903 123 36 6 0 0 0 0.71341 1 38360 38360 1.2148 0 1 27490000 38021 4182 25431 25918 44609 44609 -0.034434891333603446 LTYARPNNLI 10 Unmodified _LTYARPNNLI_ 0 0 0 REV__ENSG00000166262|ENST00000299338|FAM227B REV__ENSG00000166262|ENST00000299338|FAM227B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8318481445312 2 587.83258 1173.65061 0.45355 0.00026661 -1.1094 -0.00065216 -0.65588 -0.00038555 587.8319659189883 62.843 0.29755 62.357 62.244 62.542 -0.48617 33 14 3 0 0 0 0.35903 1 34243 34243 24.021 0 1 12204000 + 38022 22098 25432 25919 44610 44610 0.07072792288704477 LTYARPNNLI 10 Unmodified _LTYARPNNLI_ 0 0 0 REV__ENSG00000166262|ENST00000299338|FAM227B REV__ENSG00000166262|ENST00000299338|FAM227B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8331909179688 2 587.83258 1173.65061 0.44557 0.00026192 -0.36636 -0.00021536 0.079204 4.6559E-05 587.8321550954878 62.47 0.27915 62.449 62.322 62.602 -0.021614 35 14 3 0 0 0 0.14923 1 34136 34136 39.95 5.548 1 16968000 + 38023 22098 25432 25919 44611 44611 0.07072792288704477 LTYARPNNLI 10 Unmodified _LTYARPNNLI_ 0 0 0 REV__ENSG00000166262|ENST00000299338|FAM227B REV__ENSG00000166262|ENST00000299338|FAM227B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.83258 1173.65061 0.44557 0.00026192 -0.36636 -0.00021536 0.079204 4.6559E-05 587.8321550954878 62.47 0.27915 62.449 62.322 62.602 -0.021614 0.045982 0.00056651 NaN 39.95 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 16968000 + 38024 22098 25432 25919 0.07072792288704477 LTYDVKYQE 9 Unmodified _LTYDVKYQE_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.30859375 2 579.787504 1157.56045 0.45549 0.00026409 -2.9758 -0.0017253 -2.5203 -0.0014612 579.7860536786972 66.982 0.096642 66.982 66.896 66.992 0 6 4 2 0 0 0 0.16418 1 37350 37350 25.399 2.663 1 484590 + 38025 22192 25433 25920 44612 44612 -0.012023018303580102 LTYLQYLSS 9 Unmodified _LTYLQYLSS_ 0 0 0 ENST00000378026.4_3_12:106632570-106632747:-|nuORF ENST00000378026.4_3_12:106632570-106632747:-|nuORF ENST00000378026.4_3_12:106632570-106632747:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2880249023438 2 544.28714 1086.55973 0.29889 0.00016268 -1.6114 -0.00087709 -1.3126 -0.00071441 544.287045842306 69.294 0.29728 69.294 69.103 69.4 0 27 12 3 0 0 0 0.12424 1 38586 38586 30.637 8.8899 1 1721500 38026 12539 25434 25921 44613 44613 0.019909035205728287 LTYSRPWAFSF 11 Unmodified _LTYSRPWAFSF_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.84521484375 2 687.845687 1373.67682 0.3636 0.0002501 -1.5565 -0.0010706 -1.1929 -0.00082053 687.8449327480162 53.845 0.18126 53.378 53.285 53.466 -0.46664 21 8 3 0 0 0 0.48615 1 29138 29138 17.113 0 1 6097500 + 38027 18166 25435 25922 44614 44614 0.004930614601562411 LTYTIPISNPL 11 Unmodified _LTYTIPISNPL_ 0 0 0 ENST00000598118.1_1_19:35506495-35517042:+|nuORF;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A ENST00000598118.1_1_19:35506495-35517042:+|nuORF ENST00000598118.1_1_19:35506495-35517042:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 616.352294921875 2 616.350271 1230.68599 NaN NaN NaN NaN NaN NaN NaN 90.93 1 84.754 84.254 85.254 -6.1757 0 0 0 0.29502 1 60092 60092 40.725 16.935 1 38028 1529 25436 25923 44615 44615 0.07987410025862118 LTYTLEAF 8 Unmodified _LTYTLEAF_ 0 0 0 REV__ENST00000468499.5_1_7:99688666-99688864:+|nuORF REV__ENST00000468499.5_1_7:99688666-99688864:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2497863769531 2 479.250026 956.485499 NaN NaN NaN NaN NaN NaN NaN 79.032 1 79.032 78.532 79.532 0 0 0 0 0.93587 1 43906 43906 13.508 1.8676 1 + 38029 22288 25437 25924 44616 44616 0.005515604290394549 LVAAATPP 8 Unmodified _LVAAATPP_ 0 0 0 REV__ENST00000484966.1_1_22:42177657-42189882:+|nuORF REV__ENST00000484966.1_1_22:42177657-42189882:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2205200195312 2 370.221072 738.42759 0.22889 8.4742E-05 -0.86225 -0.00031922 -0.63335 -0.00023448 370.2208067534859 70.489 0.465 70.012 69.821 70.286 -0.47735 55 38 2 0 0 0 0.65867 1 38638 38638 20.871 1.4322 1 6653800 + 38030 27768 25438 25925 44617 44617 0.047913432942777945 LVAEQPKKDLH 11 Unmodified _LVAEQPKKDLH_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5486450195312 3 426.578588 1276.71394 0.21624 9.2244E-05 0.74321 0.00031704 0.95945 0.00040928 426.57885729507325 28.27 0.49236 28.299 28.188 28.681 0.029566 40 19 3 0 0 0 0.30482 1 14884 14884 4.1166 1.4854 1 8076800 38031 4205 25439 25926 44618 44618 0.08664733005957714 LVAFLVVLTI 10 Unmodified _LVAFLVVLTI_ 0 0 0 ENSG00000183607|ENST00000328895|GKN2 ENSG00000183607|ENST00000328895|GKN2 ENSG00000183607|ENST00000328895|GKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3630981445312 2 544.359911 1086.70527 2.32 0.0012629 2.6851 0.0014617 5.0051 0.0027246 544.3612933214218 100.01 0.11135 99.975 99.934 100.05 -0.036301 5 3 2 0 0 0 0.65502 1 55578 55578 7.9102 2.6795 1 1064400 38032 9166 25440 25927 44619 44619 0.16538411107444517 LVAGSFSPP 9 Unmodified _LVAGSFSPP_ 0 0 0 ENST00000564629.1_1_16:31470274-31471003:-|nuORF ENST00000564629.1_1_16:31470274-31471003:-|nuORF ENST00000564629.1_1_16:31470274-31471003:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.4667358398438 1 874.466895 873.459619 1.3245 0.0011582 0.014097 1.2327E-05 1.3386 0.0011705 874.4671541070443 101.07 0.1587 94.899 94.798 94.956 -6.1757 12 8 2 0 0 0 0.0086629 1 67746 67746 101.72 12.818 1 21142000 38033 15389 25441 25928 44620 44620 0.01782710977431634 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2974243164062 2 464.29731 926.580068 1.1544 0.00053601 -1.314 -0.00061007 -0.15952 -7.4065E-05 464.29663022951775 51.152 0.20432 51.152 51.05 51.254 0 16 9 2 0 0 0 0.13184 1 28233 28233 42.095 4.1206 1 2814300 + 38034 20529 25442 25929 44621 44621 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2969055175781 2 464.29731 926.580068 -0.22016 -0.00010222 0.094736 4.3986E-05 -0.12542 -5.8234E-05 464.2973893706577 51.589 0.25905 51.156 51.026 51.285 -0.43367 30 13 3 0 0 0 0.013474 1 27799 27799 81.613 22.934 1 11801000 + 38035 20529 25442 25929 44622 44622 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2979125976562 2 464.29731 926.580068 NaN NaN NaN NaN NaN NaN NaN 51.235 1 51.181 50.681 51.681 -0.053871 0 0 0 0.21264 1 27722 27722 42.095 6.0504 1 + 38036 20529 25442 25929 44623 44623 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2980651855469 2 464.29731 926.580068 0.9863 0.00045793 -0.25002 -0.00011608 0.73628 0.00034185 464.297255366435 57.504 0.36833 51.476 51.313 51.681 -6.0275 32 19 2 0 0 0 0.013474 1 36830 36830 81.613 9.6908 1 37951000 + 38037 20529 25442 25929 44624 44624 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 464.7667236328125 2 464.29731 926.580068 0.9863 0.00045793 -0.25002 -0.00011608 0.73628 0.00034185 464.297255366435 57.504 0.36833 51.476 51.313 51.681 -6.0275 32 19 2 0 0 0 0.10458 1 36768 36768 42.095 4.1206 1 37951000 + 38038 20529 25442 25929 44625 44625 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 464.29731 926.580068 1.1544 0.00053601 -1.314 -0.00061007 -0.15952 -7.4065E-05 464.29663022951775 51.152 0.20432 51.152 51.05 51.254 0 -0.10929 -0.000943 NaN 81.613 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2814300 + 38039 20529 25442 25929 0.11384118971056978 LVAGTILGAL 10 Unmodified _LVAGTILGAL_ 0 0 0 REV__ENSG00000141349|ENST00000269097|G6PC3 REV__ENSG00000141349|ENST00000269097|G6PC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 464.29731 926.580068 -0.22016 -0.00010222 0.094736 4.3986E-05 -0.12542 -5.8234E-05 464.2973893706577 51.589 0.25905 51.156 51.026 51.285 -0.43367 -0.10563 0.00036512 NaN 81.613 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 11801000 + 38040 20529 25442 25929 0.11384118971056978 LVAKLAHCAA 10 Unmodified _LVAKLAHCAA_ 0 0 0 REV__HDHD2|p.R5H|1|0.15|ENSG00000167220|chr18:47136426-47136426|C/T|missense_variant REV__HDHD2|p.R5H|1|0.15|ENSG00000167220|chr18:47136426-47136426|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7855224609375 2 498.786587 995.558621 0.30976 0.0001545 -1.2802 -0.00063853 -0.9704 -0.00048402 498.7858526234011 80.67 0.32069 80.67 80.519 80.84 0 22 15 2 0 0 0 0.71123 1 44788 44788 1.6526 0.85899 1 551780 + 38041 29360 25443 25930 44626 44626 0.06066410670666755 LVAKLAHCAA 10 Unmodified _LVAKLAHCAA_ 0 0 0 REV__HDHD2|p.R5H|1|0.15|ENSG00000167220|chr18:47136426-47136426|C/T|missense_variant REV__HDHD2|p.R5H|1|0.15|ENSG00000167220|chr18:47136426-47136426|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 498.786587 995.558621 0.30976 0.0001545 -1.2802 -0.00063853 -0.9704 -0.00048402 498.7858526234011 80.67 0.32069 80.67 80.519 80.84 0 0 0 NaN 1.6526 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 551780 + 38042 29360 25443 25930 0.06066410670666755 LVANIAVNLI 10 Unmodified _LVANIAVNLI_ 0 0 0 nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3297729492188 2 520.329142 1038.64373 0.58372 0.00030372 -0.41918 -0.00021811 0.16454 8.5616E-05 520.3290851645497 70.328 0.37589 70.363 70.173 70.549 0.035515 33 17 3 0 0 0 0.42068 1 38709 38709 20.454 1.1966 1 3274300 38043 9963 25444 25931 44627 44627 0.12595479408128085 LVANIAVNLI 10 Unmodified _LVANIAVNLI_ 0 0 0 nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.329142 1038.64373 0.33817 0.00017596 0.012041 6.2654E-06 0.35022 0.00018223 520.3293659950973 70.929 0.32471 70.452 70.286 70.611 -0.47735 0.044384 0.00014581 NaN 20.454 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5816600 38044 9963 25444 25931 0.12595479408128085 LVANIAVNLI 10 Unmodified _LVANIAVNLI_ 0 0 0 nc|ENSG00000197506|Q9HAS3-2|SLC28A3;ENSG00000197506|ENST00000376238|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.329142 1038.64373 0.58372 0.00030372 -0.41918 -0.00021811 0.16454 8.5616E-05 520.3290851645497 70.328 0.37589 70.363 70.173 70.549 0.035515 -0.044384 -0.00030294 NaN 20.454 33 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3274300 38045 9963 25444 25931 0.12595479408128085 LVAPATAAY 9 Unmodified _LVAPATAAY_ 0 0 0 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 876.4825439453125 1 876.482545 875.475269 0.28569 0.0002504 -0.029388 -2.5758E-05 0.2563 0.00022465 876.4829020785211 43.196 0.19593 43.196 43.084 43.28 0 14 9 2 0 0 0 0.0025195 1 23432 23432 129.2 84.793 1 5103100 38046 9431 25445 25932 44628 44628 0.03254997494457257 LVAPATAAY 9 Unmodified _LVAPATAAY_ 0 0 0 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 ENSG00000185950|ENST00000375856|IRS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4827270507812 1 876.482545 875.475269 1.1238 0.00098499 -0.65167 -0.00057118 0.47212 0.00041381 876.4820347485868 50.471 0.27578 44.932 44.741 45.017 -5.5391 28 17 2 0 0 0 0.0058506 1 31601 31601 114.94 72.849 1 15284000 38047 9431 25445 25932 44629 44629 0.03254997494457257 LVAPGRSLF 9 Unmodified _LVAPGRSLF_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2824401855469 2 480.287277 958.560001 1.1394 0.00054722 -3.5006 -0.0016813 -2.3613 -0.0011341 480.28537969400304 86.138 0.84116 79.962 79.424 80.266 -6.1757 86 46 2 0 0 0 0.14602 1 56581 56581 28.487 2.1456 1 27942000 + 38048 23849 25446 25933 44630 44630 0.0790636803109237 LVASEKSPI 9 Unmodified _LVASEKSPI_ 0 0 0 REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2777099609375 2 472.276575 942.538597 0.94894 0.00044816 0.81578 0.00038528 1.7647 0.00083344 472.2770375629235 51.067 0.32565 45.418 45.232 45.558 -5.649 29 19 2 0 0 0 0.25681 1 32072 32072 19.257 0 1 37121000 + 38049 26387 25447 25934 44631 44631 0.06502938211713172 LVASEKSPI 9 Unmodified _LVASEKSPI_ 0 0 0 REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF REV__ENST00000392253.2_1_2:202275976-202276645:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 472.276575 942.538597 0.12364 5.8392E-05 1.7338 0.00081883 1.8574 0.00087722 472.2773070793913 45.805 0.35545 45.777 45.642 45.997 -0.028011 0.17994 0.00033472 NaN 19.257 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 18368000 + 38050 26387 25447 25934 0.06502938211713172 LVATKCMC 8 Unmodified _LVATKCMC_ 0 0 0 REV__ENST00000486098.1_1_21:44482232-44483209:-|nuORF REV__ENST00000486098.1_1_21:44482232-44483209:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.70849609375 2 434.708102 867.401651 0.60336 0.00026229 -0.20259 -8.8068E-05 0.40077 0.00017422 434.7079977220243 53.854 0.34555 53.854 53.705 54.051 0 37 15 3 0 0 0 0.6895 2 29845 29845;29954 18.135 0 1 17408000 + 38051 27794 25448 25935 44632;44633 44632 -0.03735333535519203 LVATLGYLLF 10 Unmodified _LVATLGYLLF_ 0 0 0 REV__ENSG00000197496|ENST00000359271|SLC2A10 REV__ENSG00000197496|ENST00000359271|SLC2A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8358154296875 2 555.333893 1108.65323 0.92043 0.00051115 0.068249 3.7901E-05 0.98868 0.00054905 555.333889795736 90.813 0.29141 90.85 90.692 90.983 0.036507 26 10 3 0 0 0 0.39779 1 50582 50582 21.747 2.4897 1 22261000 + 38052 23932 25449 25936 44634 44634 0.10325247693640449 LVAWFGHYI 9 Unmodified _LVAWFGHYI_ 0 0 0 REV__TMEM182|p.R113H|1|0.26|ENSG00000170417|chr2:102797869-102797869|G/A|missense_variant REV__TMEM182|p.R113H|1|0.26|ENSG00000170417|chr2:102797869-102797869|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1993408203125 3 369.19916 1104.57565 -0.46884 -0.00017309 -0.10671 -3.9396E-05 -0.57554 -0.00021249 369.1992875013106 25.656 0.43633 25.656 25.447 25.883 0 43 20 3 0 0 0 0.46577 1 13134 13134 5.7319 0 1 3715700 + 38053 30120 25450 25937 44635 44635 0.0275465454813002 LVAYMKQSI 9 Unmodified _LVAYMKQSI_ 0 0 0 REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5;REV__HDAC5|p.P770L|1|0.19|ENSG00000108840|chr17:44083851-44083851|G/A|missense_variant REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.76904296875 2 526.794078 1051.5736 -0.32669 -0.0001721 3.5174 0.0018529 3.1907 0.0016808 526.7960082552917 27.619 0.14977 27.619 27.53 27.679 0 9 6 2 0 0 0 0.23158 1 14235 14235 20.454 2.3186 1 780310 + 38054 18634;29358 25451 25938 44636 44636 0.04987857748028546 LVCDIPSD 8 Unmodified _LVCDIPSD_ 0 0 0 REV__nc|ENSG00000092871|Q8WZ73-3|RFFL REV__nc|ENSG00000092871|Q8WZ73-3|RFFL MSMS AL20221201_MKP_PDAC_01 4 431.2066650390625 2 431.204761 860.394969 NaN NaN NaN NaN NaN NaN NaN 95.58 1 89.405 88.905 89.905 -6.1757 0 0 0 0.97348 1 63312 63312 5.7604 0 1 + 38055 17917 25452 25939 44637 44637 -0.04081231890882009 LVCDMIRMI 9 Unmodified _LVCDMIRMI_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8;REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.779052734375 2 547.281966 1092.54938 0.52331 0.0002864 0.88709 0.00048549 1.4104 0.00077189 547.2829249833948 62.592 1.2592 62.104 61.489 62.748 -0.48764 194 60 7 0 0 0 0.37804 1 33839 33839 13.508 0 1 196410000 + 38056 19463;17185 25453 25940 44638 44638 0.006805579984984433 LVCFADQGSGF 11 Unmodified _LVCFADQGSGF_ 0 0 0 ENST00000527005.5_1_6:135286419-135303731:-|nuORF ENST00000527005.5_1_6:135286419-135303731:-|nuORF ENST00000527005.5_1_6:135286419-135303731:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.305908203125 2 572.260599 1142.50665 0.49672 0.00028425 3.3874 0.0019385 3.8842 0.0022228 572.2601142706952 63.602 0.17922 63.116 62.992 63.171 -0.48617 12 7 2 0 0 0 0.29947 1 34635 34635 6.7232 1.4925 1 897860 38057 14826 25454 25941 44639 44639 -0.05890797533743353 LVCGRRHR 8 Unmodified _LVCGRRHR_ 0 0 0 REV__ENST00000319170.9_1_2:204303717-204303885:-|nuORF REV__ENST00000319170.9_1_2:204303717-204303885:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7864685058594 2 498.785244 995.555936 1.8036 0.0008996 0.49071 0.00024476 2.2943 0.0011444 498.7853589040578 81.666 0.44563 81.726 81.507 81.952 0.059929 51 17 4 0 0 0 0.80311 1 45247 45247 4.756 0.81161 1 11217000 + 38058 25491 25455 25942 44640 44640 0.05798000056381625 LVCKISGDVM 10 Carbamidomethyl (C),Oxidation (M) _LVC(Carbamidomethyl (C))KISGDVM(Oxidation (M))_ LVC(1)KISGDVM LVCKISGDVM(1) LVC(100)KISGDVM LVCKISGDVM(100) 0 1 1 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000515766.1_1_4:1332171-1332954:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.286376953125 2 569.28576 1136.55697 1.205 0.00068601 0.28989 0.00016503 1.4949 0.00085104 569.2865202686821 34.177 0.31457 30.191 30.045 30.359 -3.9853 39 17 3 0 0 0 0.0042881 1 19652 19652 100.71 66.307 1 12082000 38059 1553 25456 25943 44641 44641 146 262 -0.005850112002462993 LVCKISGDVM 10 Carbamidomethyl (C) _LVC(Carbamidomethyl (C))KISGDVM_ LVC(1)KISGDVM LVC(64)KISGDVM 0 1 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000515766.1_1_4:1332171-1332954:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MSMS AL20221201_MKP_PDAC_01 4 561.2883911132812 2 561.288302 1120.56205 NaN NaN NaN NaN NaN NaN NaN 46.937 1 41.857 41.357 42.357 -5.0805 0 0 0 0.024171 1 29074 29074 63.961 16.366 1 38060 1553 25456 25944 44642 44642 146 0.006592926623397943 LVCKISGDVM 10 Carbamidomethyl (C) _LVC(Carbamidomethyl (C))KISGDVM_ LVC(1)KISGDVM LVC(77)KISGDVM 0 1 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000515766.1_1_4:1332171-1332954:+|nuORF;ENST00000503162.1_1_4:1326530-1332954:+|nuORF;ENST00000512289.5_1_4:1323768-1332954:+|nuORF;ENST00000506530.5_1_4:1326530-1332660:+|nuORF nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MSMS AL20221201_MKP_PDAC_01 4 561.30322265625 2 561.288302 1120.56205 NaN NaN NaN NaN NaN NaN NaN 46.95 1 41.869 41.369 42.369 -5.0805 0 0 0 0.017671 1 29084 29084 76.825 30.804 1 38061 1553 25456 25944 44643 44643 146 0.006592926623397943 LVCKQWYRLI 10 Unmodified _LVCKQWYRLI_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42;ENST00000478089.1_1_1:16621266-16641853:-|nuORF ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 441.2077026367188 3 441.253159 1320.73765 0.30522 0.00013468 -0.33224 -0.0001466 -0.027019 -1.1922E-05 441.58728609764097 24.804 0.25772 21.921 21.778 22.036 -2.8831 28 15 2 0 0 0 0.23993 1 13549 13549 1.7423 0.28716 1 9801200 38062 628 25457 25945 44644 44644 0.09010875238755034 LVCLFVCSI 9 Unmodified _LVCLFVCSI_ 0 0 0 ENST00000367866.6_1_1:167386158-167386248:+|nuORF ENST00000367866.6_1_1:167386158-167386248:+|nuORF ENST00000367866.6_1_1:167386158-167386248:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7711181640625 2 498.766474 995.518396 0.3328 0.00016599 -0.045835 -2.2861E-05 0.28696 0.00014313 498.7664391404745 63.348 0.56306 63.348 63.096 63.659 0 92 27 5 0 0 0 0.068777 1 35456 35456 40.449 8.3316 1 47492000 38063 12250 25458 25946 44645 44645 0.02045727955885468 LVCVLVALA 9 Unmodified _LVCVLVALA_ 0 0 0 nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941-4|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-8|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-7|MUC1;ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-10|MUC1;nc|ENSG00000185499|P15941-16|MUC1 nc|ENSG00000185499|P15941-2|MUC1 nc|ENSG00000185499|P15941-2|MUC1 MSMS AL20221201_MKP_PDAC_01 4 450.79150390625 2 450.782982 899.55141 NaN NaN NaN NaN NaN NaN NaN 100.65 1 94.473 93.973 94.973 -6.1757 0 0 0 0.24185 1 67358 67358 28.173 0 1 38064 9377 25459 25947 44646 44646 0.09761678070242397 LVCVVLSYTY 10 Unmodified _LVCVVLSYTY_ 0 0 0 ENSG00000205327|ENST00000548615|OR6C68 ENSG00000205327|ENST00000548615|OR6C68 ENSG00000205327|ENST00000548615|OR6C68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8577880859375 2 580.307018 1158.59948 1.2734 0.00073897 -2.2822 -0.0013244 -1.0088 -0.00058539 580.3054531033428 101.12 0.15908 94.948 94.815 94.974 -6.1757 13 8 2 0 0 0 0.5905 1 67735 67735 11.64 0.81637 1 22202000 38065 10359 25460 25948 44647 44647 0.026527071996497398 LVCYFTNW 8 Unmodified _LVCYFTNW_ 0 0 0 nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1;ENST00000530597.1_1_1:111772478-111773566:+|nuORF;ENST00000526684.1_1_1:111772478-111773917:+|nuORF;ENSG00000085465|ENST00000369732|OVGP1;ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2 nc|ENSG00000133063|Q13231-2|CHIT1;ENSG00000064886|ENST00000369748|CHI3L2 ENSG00000064886|ENST00000369748|CHI3L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7708740234375 2 523.244221 1044.47389 -0.46688 -0.00024429 -0.91156 -0.00047697 -1.3784 -0.00072126 523.2431126468791 35.3 0.17519 35.078 35.001 35.176 -0.2224 10 7 2 0 0 0 8.7369 1 18453 18453 9.3474 1.4373 1 716620 38066 886;4484 25461 25949 44648 44648 -0.04656959865951649 LVDAGVPM 8 Unmodified _LVDAGVPM_ 0 0 0 ENSG00000077348|ENST00000221233|EXOSC5 ENSG00000077348|ENST00000221233|EXOSC5 ENSG00000077348|ENST00000221233|EXOSC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.4163818359375 1 801.417502 800.410226 0.24066 0.00019287 -1.1191 -0.00089689 -0.87847 -0.00070402 801.4165846835922 74.419 0.32976 74.419 74.21 74.54 0 20 14 2 0 0 0 0.77907 1 41364 41364 10.183 0 1 888390 38067 1215 25462 25950 44649 44649 0.0020367969697190347 LVDALEAHVK 10 Unmodified _LVDALEAHVK_ 0 0 0 REV__ENST00000493855.1_1_7:56123379-56123520:+|nuORF REV__ENST00000493855.1_1_7:56123379-56123520:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.8153686523438 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 30.057 1 29.977 29.477 30.477 -0.080429 0 0 0 0.94014 1 15586 15586 6.2058 0 1 + 38068 19830 25463 25951 44650 44650 0.07009701023071102 LVDGFSHPYL 10 Unmodified _LVDGFSHPYL_ 0 0 0 PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1976623535156 3 383.197596 1146.57096 1.3898 0.00053257 -0.53239 -0.00020401 0.85741 0.00032856 383.19710820046805 48.395 0.81659 43.161 42.851 43.667 -5.2339 120 48 4 0 0 0 0.63089 1 30273 30273 9.544 4.1413 1 204960000 38069 16683 25464 25952 44651 44651 0.003537256147183143 LVDGVTECSG 10 Unmodified _LVDGVTECSG_ 0 0 0 nc|ENSG00000177575|Q86VB7-4|CD163;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF nc|ENSG00000177575|Q86VB7-4|CD163 nc|ENSG00000177575|Q86VB7-4|CD163 MSMS AL20221201_MKP_PDAC_01 4 490.2252197265625 2 490.223682 978.432811 NaN NaN NaN NaN NaN NaN NaN 55.507 1 49.586 49.086 50.086 -5.9211 0 0 0 0.61917 1 35345 35345 20.454 2.3186 1 38070 16406 25465 25953 44652 44652 -0.05726765696056191 LVDLAILTG 9 Unmodified _LVDLAILTG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7825622558594 2 457.781493 913.548434 0.95315 0.00043633 -0.050893 -2.3298E-05 0.90226 0.00041304 457.78153893684976 83.992 0.52119 77.817 77.567 78.088 -6.1757 47 27 2 0 0 0 0.026094 1 55168 55168 57.471 0 1 13222000 + 38071 17659 25466 25954 44653 44653 0.08820126217096913 LVDQKLEL 8 Unmodified _LVDQKLEL_ 0 0 0 ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2841796875 2 479.2844 956.554247 0.53745 0.00025759 0.10322 4.947E-05 0.64067 0.00030706 479.28437108384094 72.919 0.44941 72.919 72.779 73.229 0 32 20 2 0 0 0 0.78849 1 40669 40669 9.3474 0.75416 1 573820 38072 6376 25467 25955 44654 44654 0.0742322472875685 LVDQKLEL 8 Unmodified _LVDQKLEL_ 0 0 0 ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2789306640625 2 479.2844 956.554247 0.38099 0.0001826 -0.58896 -0.00028228 -0.20797 -9.9679E-05 479.283997422818 70.046 1.5932 70.077 69.806 71.399 0.030914 178 75 5 0 0 0 0.78849 1 38956 38956 9.3474 0.75416 1 339710000 38073 6376 25467 25955 44655 44655 0.0742322472875685 LVEDLLQPL 9 Unmodified _LVEDLLQPL_ 0 0 0 ENST00000401878.7_2_7:155570161-155570317:+|nuORF ENST00000401878.7_2_7:155570161-155570317:+|nuORF ENST00000401878.7_2_7:155570161-155570317:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3060302734375 2 520.305332 1038.59611 0.28147 0.00014645 -0.093594 -4.8698E-05 0.18788 9.7753E-05 520.3052494403711 97.022 0.76825 96.718 96.099 96.867 -0.30472 73 44 3 0 0 0 0.16226 1 52942 52942 26.884 0 1 2782000 38074 12885 25468 25956 44656 44656 0.07835780417281057 LVEDYEHYI 9 Unmodified _LVEDYEHYI_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1920166015625 3 394.188878 1179.5448 -0.39784 -0.00015683 -1.7687 -0.00069722 -2.1666 -0.00085404 394.52287446942717 22.194 0.25924 22.194 22.065 22.324 0 20 12 2 0 0 0 0.58466 1 11228 11228 1.1933 0 1 967020 38075 883 25469 25957 44657 44657 -0.03778588347427103 LVEELYLGDI 10 Unmodified _LVEELYLGDI_ 0 0 0 ENSG00000198768|ENST00000371149|APCDD1L ENSG00000198768|ENST00000371149|APCDD1L ENSG00000198768|ENST00000371149|APCDD1L MSMS AL20221201_MKP_PDAC_01 4 388.5450134277344 3 388.544662 1162.61216 NaN NaN NaN NaN NaN NaN NaN 76.133 1 69.958 69.458 70.458 -6.1757 0 0 0 0.76313 1 49803 49803 8.4443 0.96724 1 38076 10147 25470 25958 44658 44658 0.0373544186354593 LVEGVIQGV 9 Unmodified _LVEGVIQGV_ 0 0 0 REV__ENST00000554952.5_1_14:53173937-53176322:+|nuORF REV__ENST00000554952.5_1_14:53173937-53176322:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 913.5372924804688 1 913.535309 912.528032 0.24633 0.00022503 1.7264 0.0015771 1.9727 0.0018021 913.5362801669971 67.767 0.091331 67.285 67.232 67.323 -0.48218 5 3 2 0 0 0 0.2001 1 37044 37044 23.148 0 1 297850 + 38077 18077 25471 25959 44659 44659 0.06826955557301062 LVEKEPLLGF 10 Unmodified _LVEKEPLLGF_ 0 0 0 REV__nc|ENSG00000136940|Q13371-2|PDCL REV__nc|ENSG00000136940|Q13371-2|PDCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.834716796875 2 572.834257 1143.65396 0.5467 0.00031317 0.6025 0.00034514 1.1492 0.0006583 572.8345179464956 95.146 0.49649 94.778 94.541 95.038 -0.36814 74 24 4 0 0 0 0.71276 1 52086 52086 1.4819 0.15237 1 8168200 + 38078 20204 25472 25960 44660 44660 0.08788042342712288 LVEKRPFA 8 Unmodified _LVEKRPFA_ 0 0 0 REV__ENSG00000110427|ENST00000658780|KIAA1549L REV__ENSG00000110427|ENST00000658780|KIAA1549L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2900085449219 2 480.287277 958.560001 0.49022 0.00023545 0.88741 0.00042621 1.3776 0.00066166 480.2877759791701 48.026 0.3377 47.988 47.805 48.142 -0.038643 49 16 4 0 0 0 0.48669 2 25851 25851;25958 36.044 5.8194 1 21251000 + 38079 18708 25473 25961 44661;44662 44661 0.07906368031081001 LVEKRPFA 8 Unmodified _LVEKRPFA_ 0 0 0 REV__ENSG00000110427|ENST00000658780|KIAA1549L REV__ENSG00000110427|ENST00000658780|KIAA1549L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.9479675292969 2 480.287277 958.560001 1.1394 0.00054722 -3.5006 -0.0016813 -2.3613 -0.0011341 480.28537969400304 86.138 0.84116 79.962 79.424 80.266 -6.1757 86 46 2 0 0 0 8.7369 1 56850 56850 36.044 1.8569 1 27942000 + 38080 18708 25473 25961 44663 44663 0.07906368031081001 LVELVLQL 8 Unmodified _LVELVLQL_ 0 0 0 REV__nc|ENSG00000173898|O15020-2|SPTBN2 REV__nc|ENSG00000173898|O15020-2|SPTBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7985534667969 2 463.799686 925.584819 NaN NaN NaN NaN NaN NaN NaN 36.373 1 36.398 35.898 36.898 0.024967 0 0 0 0.97444 1 19268 19268 4.756 0 1 + 38081 22757 25474 25962 44664 44664 0.11905003113804469 LVELVPKVEL 10 Unmodified _LVELVPKVEL_ 0 0 0 REV__ENSG00000130363|ENST00000367069|RSPH3 REV__ENSG00000130363|ENST00000367069|RSPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2406005859375 3 380.240914 1137.70091 0.081181 3.0868E-05 -1.1348 -0.0004315 -1.0536 -0.00040063 380.2405168315293 19.103 0.23626 19.111 18.99 19.226 0.0078487 26 14 3 0 0 0 0.65023 1 9704 9704 8.4443 0 1 2004000 + 38082 19718 25475 25963 44665 44665 0.1375690189386205 LVEMEWLDF 9 Unmodified _LVEMEWLDF_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1869201660156 3 394.523092 1180.54745 NaN NaN NaN NaN NaN NaN NaN 22.124 1 22.147 21.647 22.647 0.022896 0 0 0 0.82396 1 11246 11246 2.7352 0.82882 1 38083 1796 25476 25964 44666 44666 -0.03560456214131591 LVENVIGEI 9 Unmodified _LVENVIGEI_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 985.5570678710938 1 985.556438 984.549162 0.62268 0.00061369 -0.89675 -0.0008838 -0.27407 -0.00027012 985.556859073383 74.767 0.09478 74.291 74.207 74.302 -0.47588 5 3 2 0 0 0 0.46501 1 40922 40922 9.3831 0.63772 1 351730 38084 7398 25477 25965 44667 44667 0.056269208661547054 LVERPRPG 8 Unmodified _LVERPRPG_ 0 0 0 REV__ENSG00000237412|ENST00000617714|PRSS56 REV__ENSG00000237412|ENST00000617714|PRSS56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2743225097656 2 462.274701 922.534849 0.03063 1.416E-05 0.17318 8.0055E-05 0.20381 9.4215E-05 462.2747954848087 30.373 0.30801 30.404 30.233 30.541 0.030104 19 13 2 0 0 0 0.76266 1 15847 15847 11.64 0 1 1750800 + 38085 24431 25478 25966 44668 44668 0.070483132285176 LVETHMARVE 10 Unmodified _LVETHMARVE_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5418701171875 3 395.541257 1183.60194 0.83492 0.00033024 -0.10903 -4.3126E-05 0.72588 0.00028712 395.54116651959555 49.91 0.23195 49.518 49.395 49.627 -0.3923 16 11 2 0 0 0 0.62068 1 26868 26868 8.9762 0.82072 1 2196300 38086 5399 25479 25967 44669 44669 0.017485556573092254 LVEWSPSG 8 Unmodified _LVEWSPSG_ 0 0 0 REV__ENST00000415912.6_1_1:21545657-21545924:-|nuORF REV__ENST00000415912.6_1_1:21545657-21545924:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4307250976562 1 874.430509 873.423233 0.1384 0.00012102 0.31835 0.00027837 0.45675 0.0003994 874.4308861567166 91.123 0.41906 91.123 90.906 91.325 0 54 23 3 0 0 0 0.67481 1 50416 50416 19.439 0 1 4044200 + 38087 26764 25480 25968 44670 44670 -0.018541659192806037 LVEYERTKF 9 Unmodified _LVEYERTKF_ 0 0 0 ENST00000552690.1_1_12:106715380-106717765:+|nuORF;nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2 ENST00000552690.1_1_12:106715380-106717765:+|nuORF ENST00000552690.1_1_12:106715380-106717765:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5481872558594 3 395.548518 1183.62372 -1.1544 -0.0004566 0.80705 0.00031923 -0.34731 -0.00013738 395.54863737624675 32.287 0.13059 32.287 32.204 32.334 0 11 6 2 0 0 0 0.48396 1 16873 16873 8.4443 2.2099 1 1808400 38088 7427 25481 25969 44671 44671 0.039256836774939075 LVEYERTKF 9 Unmodified _LVEYERTKF_ 0 0 0 ENST00000552690.1_1_12:106715380-106717765:+|nuORF;nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2 ENST00000552690.1_1_12:106715380-106717765:+|nuORF ENST00000552690.1_1_12:106715380-106717765:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.548518 1183.62372 -0.071169 -2.8151E-05 -0.086155 -3.4078E-05 -0.15732 -6.2229E-05 395.8826663822568 32.276 0.18002 32.147 32.042 32.222 -0.12915 -0.01967 -0.00047145 NaN 8.4443 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1267300 38089 7427 25481 25969 0.039256836774939075 LVEYERTKF 9 Unmodified _LVEYERTKF_ 0 0 0 ENST00000552690.1_1_12:106715380-106717765:+|nuORF;nc|ENSG00000166046|Q8N4U5-2|TCP11L2;ENSG00000166046|ENST00000299045|TCP11L2 ENST00000552690.1_1_12:106715380-106717765:+|nuORF ENST00000552690.1_1_12:106715380-106717765:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 395.548518 1183.62372 0.79619 0.00031493 -1.2804 -0.00050646 -0.48421 -0.00019153 395.8819094767775 36.258 0.045105 32.066 32.037 32.082 -4.1928 -0.10103 -0.0018886 NaN 8.4443 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 6038500 38090 7427 25481 25969 0.039256836774939075 LVFDALIY 8 Unmodified _LVFDALIY_ 0 0 0 ENSG00000134516|ENST00000520908|DOCK2 ENSG00000134516|ENST00000520908|DOCK2 ENSG00000134516|ENST00000520908|DOCK2 MSMS AL20221201_MKP_PDAC_01 4 477.2706604003906 2 477.270761 952.52697 NaN NaN NaN NaN NaN NaN NaN 41.835 1 37.227 36.727 37.727 -4.6079 0 0 0 0.43098 1 25183 25183 49.669 9.2203 1 38091 4616 25482 25970 44672 44672 0.0488074118836721 LVFEPGQRST 10 Unmodified _LVFEPGQRST_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2994995117188 2 567.301113 1132.58767 2.1987 0.0012473 -3.5916 -0.0020375 -1.3929 -0.00079021 567.2980367313273 94.493 0.37247 94.507 94.323 94.695 0.014244 28 13 3 0 0 0 0.29752 1 52527 52527 27.629 7.1752 1 3042100 38092 7163;16335 25483 25971 44673 44673 0.026682265006456873 LVFFWVGCIR 10 Unmodified _LVFFWVGCIR_ 0 0 0 REV__L1PA3_dup5653|chr8:134272831-134273084:+|1.9657959536352017|0.0005263323012381|11.87|177.0|14|2|anti-sense REV__L1PA3_dup5653|chr8:134272831-134273084:+|1.9657959536352017|0.0005263323012381|11.87|177.0|14|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.8954162597656 3 413.895083 1238.66342 1.1189 0.00046313 -0.39172 -0.00016213 0.72722 0.00030099 413.89490281824476 19.137 0.54308 16.481 16.081 16.624 -2.6564 122 35 5 0 0 0 0.49559 1 10058 10058 16.566 6.2506 1 106710000 + 38093 16779 25484 25972 44674 44674 0.053635321472484065 LVFGSVTVY 9 Unmodified _LVFGSVTVY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2766723632812 2 492.773668 983.532783 0.84958 0.00041865 -0.70885 -0.0003493 0.14073 6.9348E-05 492.77329553120654 85.79 0.40717 79.614 79.462 79.87 -6.1757 31 22 2 0 0 0 0.10925 1 56531 56531 32.117 1.8922 1 11273000 38094 9424 25485 25973 44675 44675 0.04035839700043198 LVFGSVTVY 9 Unmodified _LVFGSVTVY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.5419921875 1 984.54006 983.532783 0.93085 0.00091646 0.19629 0.00019326 1.1271 0.0011097 984.5407930209824 85.838 0.39064 79.663 79.479 79.87 -6.1757 27 21 2 0 0 0 0.019979 2 56549 56549;56703 63.563 19.156 1 10804000 38095 9424 25485 25973 44676;44677 44676 0.04035839700043198 LVFIPDNP 8 Unmodified _LVFIPDNP_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 914.5029296875 1 914.498195 913.490919 0.38265 0.00034993 -0.11027 -0.00010084 0.27238 0.00024909 914.4991632787436 74.368 0.35078 73.892 73.714 74.065 -0.47588 21 14 2 0 0 0 0.36356 1 40680 40680 48.346 12.302 1 1169000 + 38096 18554 25486 25974 44678 44678 0.03071284011514308 LVFIPDNP 8 Unmodified _LVFIPDNP_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.4976806640625 1 914.498195 913.490919 0.35901 0.00032831 0.93514 0.00085518 1.2941 0.0011835 914.4980990917222 81.914 0.38496 75.738 75.566 75.951 -6.1757 31 21 2 0 0 0 0.28079 2 53859 53729;53859 57.471 9.1255 1 11977000 + 38097 18554 25486 25974 44679;44680 44680 0.03071284011514308 LVFIPDNP 8 Unmodified _LVFIPDNP_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 914.498195 913.490919 0.38265 0.00034993 -0.11027 -0.00010084 0.27238 0.00024909 914.4991632787436 74.368 0.35078 73.892 73.714 74.065 -0.47588 0 0 NaN 48.346 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1169000 + 38098 18554 25486 25974 0.03071284011514308 LVFNDNDNL 9 Unmodified _LVFNDNDNL_ 0 0 0 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.27978515625 2 532.256371 1062.49819 -0.14309 -7.6159E-05 -1.3399 -0.00071318 -1.483 -0.00078934 532.7565591364371 78.63 0.13008 78.144 78.059 78.189 -0.48596 6 4 2 0 0 0 0.21242 1 43024 43024 5.2307 0 1 386670 + 38099 23408 25487 25975 44681 44681 -0.0305602817873023 LVFYLPPTQLN 11 Unmodified _LVFYLPPTQLN_ 0 0 0 REV__ENST00000425327.6_2_3:118619838-118620162:-|nuORF REV__ENST00000425327.6_2_3:118619838-118620162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.5797729492188 3 435.579818 1303.71762 NaN NaN NaN NaN NaN NaN NaN 72.882 1 72.882 72.382 73.382 0 0 0 0 0.94184 1 40579 40579 0.40827 0.041592 1 + 38100 26891 25488 25976 44682 44682 0.07791402779798773 LVGACHFSL 9 Unmodified _LVGACHFSL_ 0 0 0 REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF REV__ENST00000599987.1_1_19:51519093-51520532:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.4783325195312 1 946.481499 945.474223 0.10031 9.4937E-05 -3.1625 -0.0029932 -3.0622 -0.0028983 946.4775814705743 68.099 0.19099 61.923 61.784 61.975 -6.1757 16 10 2 0 0 0 0.18465 1 44380 44380 24.674 2.9272 1 8491900 + 38101 19664 25489 25977 44683 44683 -0.0006954014609164005 LVGELVVCI 9 Carbamidomethyl (C) _LVGELVVC(Carbamidomethyl (C))I_ LVGELVVC(1)I LVGELVVC(74)I 0 1 0 ENST00000573957.1_1_17:7497970-7499300:-|nuORF ENST00000573957.1_1_17:7497970-7499300:-|nuORF ENST00000573957.1_1_17:7497970-7499300:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2896118164062 2 501.288628 1000.5627 1.0763 0.00053953 0.2389 0.00011976 1.3152 0.00065929 501.28871275194547 91.55 0.88185 85.374 84.925 85.806 -6.1757 90 49 2 0 0 0 0.012158 4 60539 60293;60413;60539;60660 74.396 19.156 1 39469000 38102 15504 25490 25978 44684;44685;44686;44687 44686 999 0.062444553737236674 LVGGENGA 8 Unmodified _LVGGENGA_ 0 0 0 ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA ENSG00000172915|ENST00000379939|NBEA ENSG00000172915|ENST00000379939|NBEA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 716.3911743164062 1 716.357345 715.350068 0.45135 0.00032333 2.7635 0.0019797 3.2149 0.002303 716.3588603286456 80.528 0.26154 74.352 74.236 74.498 -6.1757 17 13 2 0 0 0 8.7369 1 52885 52885 26.884 2.2098 1 6930400 38103 8268 25491 25979 44688 44688 -0.018992946418961765 LVGGLRQQIVE 11 Unmodified _LVGGLRQQIVE_ 0 0 0 REV__ENSG00000160299|ENST00000359568|PCNT REV__ENSG00000160299|ENST00000359568|PCNT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5755920410156 3 404.575067 1210.70337 NaN NaN NaN NaN NaN NaN NaN 26.395 1 26.422 25.922 26.922 0.026951 0 0 0 0.83655 1 13690 13690 10.315 5.4182 1 + 38104 21534 25492 25980 44689 44689 0.10644750351502807 LVGKNYCLL 9 Unmodified _LVGKNYCLL_ 0 0 0 ENST00000555499.1_1_14:75498822-75509100:-|nuORF ENST00000555499.1_1_14:75498822-75509100:-|nuORF ENST00000555499.1_1_14:75498822-75509100:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.78955078125 2 511.788795 1021.56304 0.011553 5.9127E-06 -1.1972 -0.00061273 -1.1857 -0.00060682 511.78860656926935 93.111 0.96173 86.935 86.608 87.57 -6.1757 105 65 2 0 0 0 0.10925 1 61524 61524 32.117 5.2333 1 33909000 38105 15227 25493 25981 44690 44690 0.0531187509358233 LVGLLHMVL 9 Unmodified _LVGLLHMVL_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3115234375 2 497.809531 993.604509 1.1076 0.00055135 -0.40726 -0.00020274 0.70029 0.00034861 497.80956801316944 99.364 0.08638 93.188 93.128 93.214 -6.1757 8 5 2 0 0 0 0.028712 1 66168 66168 56.048 0 1 24103000 38106 3701 25494 25982 44691 44691 0.10745055852908081 LVGQEVADEVI 11 Unmodified _LVGQEVADEVI_ 0 0 0 REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY MSMS AL20221201_MKP_PDAC_01 4 391.2313537597656 3 391.211683 1170.61322 NaN NaN NaN NaN NaN NaN NaN 76.901 1 70.725 70.225 71.225 -6.1757 0 0 0 0.88164 1 50296 50296 4.1166 0 1 + 38107 19941 25495 25983 44692 44692 0.03473656232426947 LVGSGFLLQCV 11 Unmodified _LVGSGFLLQCV_ 0 0 0 REV__nc|ENSG00000143951|O95876-2|WDPCP REV__nc|ENSG00000143951|O95876-2|WDPCP MSMS AL20221201_MKP_PDAC_01 4 568.31787109375 2 568.312635 1134.61072 NaN NaN NaN NaN NaN NaN NaN 81.604 1 75.428 74.928 75.928 -6.1757 0 0 0 0.77961 1 53573 53573 13.042 0 1 + 38108 20683 25496 25984 44693 44693 0.048795292937711565 LVGSLSCI 8 Carbamidomethyl (C) _LVGSLSC(Carbamidomethyl (C))I_ LVGSLSC(1)I LVGSLSC(86)I 0 1 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.4505615234375 1 848.454616 847.447339 -0.30158 -0.00025588 -4.0089 -0.0034014 -4.3105 -0.0036573 848.4512805931901 68.905 0.29509 68.424 68.309 68.604 -0.48071 21 12 2 0 0 0 0.15234 1 37647 37647 86.121 7.6766 1 1210700 + 38109 23418 25497 25985 44694 44694 1050 0.01751351242739929 LVGVSFLVL 9 Unmodified _LVGVSFLVL_ 0 0 0 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.5988159179688 1 946.597181 945.589904 0.88241 0.00083529 0.81396 0.00077049 1.6964 0.0016058 946.5978192865041 101.03 0.10926 94.852 94.798 94.907 -6.1757 9 5 2 0 0 0 0.045537 1 67716 67716 46.921 1.1709 1 17798000 38110 16492 25498 25986 44695 44695 0.11493306976421991 LVHGKNPI 8 Unmodified _LVHGKNPI_ 0 0 0 REV__nc|ENSG00000153904|O94760-2|DDAH1 REV__nc|ENSG00000153904|O94760-2|DDAH1 MSMS AL20221201_MKP_PDAC_01 4 439.2659606933594 2 439.266345 876.518136 NaN NaN NaN NaN NaN NaN NaN 40.205 1 35.675 35.175 36.175 -4.5294 0 0 0 0.93066 1 23983 23983 14.582 0 1 + 38111 21194 25499 25987 44696 44696 0.07493812342568162 LVHGSPTP 8 Unmodified _LVHGSPTP_ 0 0 0 REV__ENST00000325285.7_2_9:139837921-139838431:-|nuORF REV__ENST00000325285.7_2_9:139837921-139838431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.4348754882812 1 807.435929 806.428653 0.46429 0.00037488 -0.27011 -0.0002181 0.19417 0.00015678 807.4362253309437 36.645 0.16611 36.645 36.588 36.754 0 11 7 2 0 0 0 0.61462 1 19449 19449 24.674 0 1 614990 + 38112 25550 25500 25988 44697 44697 0.017695576631808763 LVHLEDSL 8 Unmodified _LVHLEDSL_ 0 0 0 REV__ENSG00000112232|ENST00000281156|KHDRBS2 REV__ENSG00000112232|ENST00000281156|KHDRBS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.7698364257812 2 463.2531 924.491647 1.1876 0.00055016 -2.3536 -0.0010903 -1.166 -0.00054016 463.2501686457664 40.874 0.66057 36.266 35.923 36.583 -4.6079 95 40 4 0 0 0 8.7369 1 24275 24275 18.135 0 1 14528000 + 38113 18796 25501 25989 44698 44698 0.026380786605727735 LVHLSSFHLF 10 Unmodified _LVHLSSFHLF_ 0 0 0 REV__ENSG00000123989|ENST00000243776|CHPF REV__ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5579528808594 3 400.557236 1198.64988 0.2158 8.644E-05 1.3909 0.00055715 1.6067 0.00064359 400.55776489769676 40.757 0.16284 40.755 40.689 40.851 -0.0017929 14 7 2 0 0 0 0.5905 1 21754 21754 6.6304 2.4409 1 3964500 + 38114 19409 25502 25990 44699 44699 0.05849997639666071 LVHRVHSY 8 Unmodified _LVHRVHSY_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.7409057617188 2 505.780151 1009.54575 0.3307 0.00016726 -0.46868 -0.00023705 -0.13798 -6.979E-05 505.7804906161947 78.443 1.5942 72.267 71.392 72.986 -6.1757 197 93 3 0 0 0 8.7369 1 51581 51581 13.508 0.97634 1 191340000 38115 276 25503 25991 44700 44700 0.04135715602797063 LVICLPRPPK 10 Unmodified _LVICLPRPPK_ 0 0 0 nc|ENSG00000050438|Q2Y0W8-7|SLC4A8 nc|ENSG00000050438|Q2Y0W8-7|SLC4A8 nc|ENSG00000050438|Q2Y0W8-7|SLC4A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2381896972656 3 379.23885 1134.69472 0.91207 0.00034589 -1.3733 -0.00052081 -0.46123 -0.00017492 379.2381365173155 63.921 0.58616 63.91 63.49 64.077 -0.010532 93 28 4 0 0 0 0.71981 1 34830 34830 0.69767 0.69767 1 16127000 38116 16029 25504 25992 44701 44701 0.13276105181330422 LVIDECVEM 9 Carbamidomethyl (C),Oxidation (M) _LVIDEC(Carbamidomethyl (C))VEM(Oxidation (M))_ LVIDEC(1)VEM LVIDECVEM(1) LVIDEC(51)VEM LVIDECVEM(51) 0 1 1 nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG;ENST00000580909.1_1_18:51933325-51933448:-|nuORF;ENST00000456003.1_1_10:13146577-13146709:-|nuORF;ENST00000480370.1_1_2:70515139-70520750:-|nuORF nc|ENSG00000224543|A8MWD9|SNRPGP15 nc|ENSG00000224543|A8MWD9|SNRPGP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2542724609375 2 562.254125 1122.4937 1.1812 0.00066412 2.0152 0.0011331 3.1964 0.0017972 562.2540969247995 54.467 0.58259 48.602 48.266 48.848 -5.8653 73 35 3 0 0 0 0.038285 1 34607 34607 50.855 21.773 1 18345000 38117 5572 25505 25993 44702 44702 569 1024 -0.06264996708137005 LVIHHLFAF 9 Unmodified _LVIHHLFAF_ 0 0 0 ENSG00000182372|ENST00000331222|CLN8 ENSG00000182372|ENST00000331222|CLN8 ENSG00000182372|ENST00000331222|CLN8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.1981201171875 3 366.214922 1095.62294 1.4631 0.0005358 3.9537 0.0014479 5.4168 0.0019837 366.55107745229117 34.644 0.14536 30.549 30.419 30.565 -4.0951 14 8 2 0 0 0 0.21302 1 19940 19940 1.1933 0.12188 1 10226000 38118 9050 25506 25994 44703 44703 0.07894933819102334 LVIHTAIH 8 Unmodified _LVIHTAIH_ 0 0 0 ENSG00000198346|ENST00000396403|ZNF813 ENSG00000198346|ENST00000396403|ZNF813 ENSG00000198346|ENST00000396403|ZNF813 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2750549316406 2 452.27417 902.533787 1.2704 0.00057457 0.21804 9.8615E-05 1.4885 0.00067319 452.2742740062288 50.217 0.43215 44.678 44.439 44.872 -5.5391 43 27 2 0 0 0 0.5953 1 31508 31508 26.341 1.6674 1 17724000 38119 10078 25507 25995 44704 44704 0.07862098859607158 LVIILIQILLN 11 Unmodified _LVIILIQILLN_ 0 0 0 ENST00000519289.1_1_8:67716646-67726114:+|nuORF ENST00000519289.1_1_8:67716646-67726114:+|nuORF ENST00000519289.1_1_8:67716646-67726114:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.2926635742188 3 422.291608 1263.853 NaN NaN NaN NaN NaN NaN NaN 105.83 1 99.653 99.153 100.15 -6.1757 0 0 0 0.9435 1 70880 70880 0 0 1 38120 14702 25508 25996 44705 44705 0.23162302641435417 LVIKGKNFM 9 Unmodified _LVIKGKNFM_ 0 0 0 REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF REV__ENST00000443016.1_1_10:11607160-11607337:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.5436096191406 3 350.544051 1048.61032 NaN NaN NaN NaN NaN NaN NaN 12.456 1 9.9745 9.4745 10.475 -2.482 0 0 0 0.84564 1 6300 6300 1.0715 0.10919 1 + 38121 27106 25509 25997 44706 44706 0.08796154364586073 LVILKRKWWKY 11 Unmodified _LVILKRKWWKY_ 0 0 0 nc|ENSG00000110660|Q8IXU6-3|SLC35F2;nc|ENSG00000110660|Q8IXU6-2|SLC35F2;ENSG00000110660|ENST00000525815|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 766.4961547851562 2 766.976839 1531.93913 NaN NaN NaN NaN NaN NaN NaN 85.651 1 85.712 85.212 86.212 0.061638 0 0 0 0.9435 1 47414 47414 0 0 1 38122 2729 25510 25998 44707 44707 0.19443307266760712 LVILWAHH 8 Unmodified _LVILWAHH_ 0 0 0 REV__nc|ENSG00000124092|Q8NI51-6|CTCFL REV__nc|ENSG00000124092|Q8NI51-6|CTCFL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7904357910156 2 494.789987 987.565421 0.33922 0.00016784 0.068603 3.3944E-05 0.40783 0.00020179 494.7902929923226 22.034 0.215 22.048 21.919 22.134 0.013796 20 8 3 0 0 0 0.80044 1 11294 11294 6.3541 3.4649 1 2710400 + 38123 29613 25511 25999 44708 44708 0.07114091613539131 LVILWAHH 8 Unmodified _LVILWAHH_ 0 0 0 REV__nc|ENSG00000124092|Q8NI51-6|CTCFL REV__nc|ENSG00000124092|Q8NI51-6|CTCFL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7903137207031 2 494.789987 987.565421 0.34427 0.00017034 -0.29501 -0.00014597 0.049259 2.4373E-05 494.7899333482053 22.227 0.19162 22.241 22.109 22.301 0.013796 16 7 3 0 0 0 0.80044 1 11390 11390 6.3541 0 1 2487800 + 38124 29613 25511 25999 44709 44709 0.07114091613539131 LVILWAHH 8 Unmodified _LVILWAHH_ 0 0 0 REV__nc|ENSG00000124092|Q8NI51-6|CTCFL REV__nc|ENSG00000124092|Q8NI51-6|CTCFL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 494.789987 987.565421 0.33922 0.00016784 0.068603 3.3944E-05 0.40783 0.00020179 494.7902929923226 22.034 0.215 22.048 21.919 22.134 0.013796 0.029633 0.0010469 NaN 6.3541 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2710400 + 38125 29613 25511 25999 0.07114091613539131 LVINHRKI 8 Unmodified _LVINHRKI_ 0 0 0 REV__nc|ENSG00000148053|Q16620-6|NTRK2 REV__nc|ENSG00000148053|Q16620-6|NTRK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.3005981445312 2 496.821818 991.629084 0.36812 0.00018289 0.42803 0.00021266 0.79615 0.00039555 496.82198751981446 39.835 0.24457 35.306 35.171 35.416 -4.5294 29 15 2 0 0 0 8.7369 1 23658 23658 9.3474 3.587 1 15215000 + 38126 20923 25512 26000 44710 44710 0.13293452050652377 LVIQSPAA 8 Unmodified _LVIQSPAA_ 0 0 0 ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF ENST00000609682.1_1_3:101395365-101395752:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.73828125 2 399.739628 797.464704 NaN NaN NaN NaN NaN NaN NaN 85.793 1 79.618 79.118 80.118 -6.1757 0 0 0 0.92941 1 56529 56529 14.838 0 1 38127 15884 25513 26001 44711 44711 0.05787014840041138 LVIQVHAKL 9 Unmodified _LVIQVHAKL_ 0 0 0 REV__ENST00000261168.8_1_12:14653445-14653610:+|nuORF REV__ENST00000261168.8_1_12:14653445-14653610:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8323059082031 2 510.831852 1019.64915 0.99957 0.00051061 -0.61359 -0.00031344 0.38598 0.00019717 510.8315637694676 58.24 0.19594 58.179 58.058 58.254 -0.060719 20 9 3 0 0 0 0.2143 1 31703 31703 21.747 4.8044 1 1945700 + 38128 24974 25514 26002 44712 44712 0.14011202990604943 LVIRKGHG 8 Unmodified _LVIRKGHG_ 0 0 0 REV__ENST00000324041.5_1_19:51412052-51412651:-|nuORF REV__ENST00000324041.5_1_19:51412052-51412651:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2796936035156 2 440.279786 878.54502 0.82551 0.00036345 -0.78882 -0.0003473 0.036691 1.6154E-05 440.27945925160964 43.073 0.21217 43.058 42.912 43.124 -0.015667 13 9 2 0 0 0 0.79669 1 23105 23105 8.5933 3.3626 1 3038700 + 38129 25529 25515 26003 44713 44713 0.10088920953762681 LVISSDGHNG 10 Unmodified _LVISSDGHNG_ 0 0 0 ENSG00000117862|ENST00000371626|TXNDC12 ENSG00000117862|ENST00000371626|TXNDC12 ENSG00000117862|ENST00000371626|TXNDC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7500610351562 2 499.748713 997.482873 0.46369 0.00023173 -3.2668 -0.0016326 -2.8032 -0.0014009 499.74718266914215 68.693 0.58323 68.693 68.463 69.046 0 39 25 2 0 0 0 0.67459 1 38298 38298 5.7319 0.50118 1 537730 38130 3340 25516 26004 44714 44714 -0.015968949758985218 LVKCAHHF 8 Unmodified _LVKCAHHF_ 0 0 0 nc|ENSG00000123643|Q7Z2H8-4|SLC36A1;nc|ENSG00000123643|Q7Z2H8-3|SLC36A1;ENSG00000123643|ENST00000243389|SLC36A1 nc|ENSG00000123643|Q7Z2H8-4|SLC36A1 nc|ENSG00000123643|Q7Z2H8-4|SLC36A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7523498535156 2 477.752547 953.490542 0.59428 0.00028392 -0.059902 -2.8618E-05 0.53437 0.0002553 477.75236878867685 86.774 0.2562 86.271 86.141 86.398 -0.50318 13 9 2 0 0 0 0.80722 1 47480 47480 2.3027 0 1 419490 38131 3725 25517 26005 44715 44715 0.01193585810665354 LVKFLGKLM 9 Unmodified _LVKFLGKLM_ 0 0 0 REV__ENSG00000100147|ENST00000255784|CCDC134 REV__ENSG00000100147|ENST00000255784|CCDC134 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2255554199219 3 350.224429 1047.65146 1.0311 0.00036112 1.6256 0.00056931 2.6567 0.00093043 350.2251185974696 22.685 0.49615 19.906 19.67 20.166 -2.7784 52 34 2 0 0 0 0.54213 1 12106 12106 4.897 4.897 1 11327000 + 38132 18019 25518 26006 44716 44716 0.12953915404045802 LVKGNDVLV 9 Unmodified _LVKGNDVLV_ 0 0 0 nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1 nc|ENSG00000021826|P31327-2|CPS1 nc|ENSG00000021826|P31327-2|CPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7931213378906 2 478.792392 955.570232 NaN NaN NaN NaN NaN NaN NaN 38.219 1 37.948 37.448 38.448 -0.27133 0 0 0 0.6557 1 20115 20115 10.824 1.4765 1 38133 530 25519 26007 44717 44717 0.09066930965650499 LVKHGGAIL 9 Unmodified _LVKHGGAIL_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2892761230469 2 454.28982 906.565087 NaN NaN NaN NaN NaN NaN NaN 59.331 1 59.278 58.778 59.778 -0.053062 0 0 0 0.20498 1 32331 32331 30.225 2.0516 1 + 38134 19423 25520 26008 44718 44718 0.10806671893703879 LVKHPCDALNF 11 Unmodified _LVKHPCDALNF_ 0 0 0 ENST00000396355.5_1_16:15818759-15818942:+|nuORF ENST00000396355.5_1_16:15818759-15818942:+|nuORF ENST00000396355.5_1_16:15818759-15818942:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8280639648438 2 628.82644 1255.63833 0.74853 0.0004707 -0.99184 -0.00062369 -0.24331 -0.000153 628.8258352922535 64.786 0.51534 64.786 64.52 65.035 1.5259E-05 72 25 4 0 0 0 0.26767 2 35423 35423;35525 28.495 8.08 1 15608000 38135 12790 25521 26009 44719;44720 44719 0.020734325539933707 LVKIFRKQA 9 Unmodified _LVKIFRKQA_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8602905273438 2 551.858401 1101.70225 NaN NaN NaN NaN NaN NaN NaN 76.183 1 76.231 75.731 76.731 0.047943 0 0 0 0.84021 1 42033 42033 4.756 2.4533 1 38136 4213 25522 26010 44721 44721 0.1554658077327531 LVKKVKKLKL 10 Unmodified _LVKKVKKLKL_ 0 0 0 ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.9447631835938 2 598.944476 1195.8744 NaN NaN NaN NaN NaN NaN NaN 25.225 1 25.225 24.725 25.725 0 0 0 0 1.0061 1 12924 12924 0 0 1 38137 14388 25523 26011 44722 44722 0.28429732460790547 LVKLHRQKLA 10 Unmodified _LVKLHRQKLA_ 0 0 0 ENSG00000102362|ENST00000372989|SYTL4;nc|ENSG00000102362|Q96C24-2|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 ENSG00000102362|ENST00000372989|SYTL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3942260742188 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 90.483 1 89.989 89.489 90.489 -0.49457 0 0 0 1.0024 1 49459 49459 0.40072 0 1 38138 2038 25524 26012 44723 44723 0.18261343584663337 LVKLLVEKR 9 Unmodified _LVKLLVEKR_ 0 0 0 ENSG00000128881|ENST00000267890|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2 ENSG00000128881|ENST00000267890|TTBK2 ENSG00000128881|ENST00000267890|TTBK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3743286132812 2 549.373884 1096.73321 1.5184 0.00083418 -0.42173 -0.00023169 1.0967 0.00060249 549.3737237958779 104.52 0.21816 98.344 98.258 98.476 -6.1757 25 16 2 0 0 0 0.59218 1 69993 69993 1.8442 0 1 8971900 38139 4096 25525 26013 44724 44724 0.18871734087497316 LVKLRILELRE 11 Unmodified _LVKLRILELRE_ 0 0 0 nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF;nc|ENSG00000033122|Q96NW7-3|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.447265625 2 691.448111 1380.88167 NaN NaN NaN NaN NaN NaN NaN 95.307 1 95.307 94.807 95.807 0 0 0 0 0.9435 1 52682 52682 0 0 1 38140 599 25526 26014 44725 44725 0.20646420270531962 LVKLRILELRE 11 Unmodified _LVKLRILELRE_ 0 0 0 nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF;nc|ENSG00000033122|Q96NW7-3|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.812255859375 2 691.448111 1380.88167 NaN NaN NaN NaN NaN NaN NaN 95.696 1 95.696 95.196 96.196 0 0 0 0 0.9435 1 52891 52891 0 0 1 38141 599 25526 26014 44726 44726 0.20646420270531962 LVKLRILELRE 11 Unmodified _LVKLRILELRE_ 0 0 0 nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF;nc|ENSG00000033122|Q96NW7-3|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.4478149414062 2 691.448111 1380.88167 NaN NaN NaN NaN NaN NaN NaN 95.883 1 95.883 95.383 96.383 0 0 0 0 0.9435 1 52992 52992 0 0 1 38142 599 25526 26014 44727 44727 0.20646420270531962 LVKPIRNIITA 11 Unmodified _LVKPIRNIITA_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-3|UNC80;ENST00000478701.1_1_2:210636760-210659540:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.4047241210938 2 619.403173 1236.79179 1.3643 0.00084502 0.53638 0.00033224 1.9006 0.0011773 619.4029397921037 105.85 1.1775 99.674 99.359 100.54 -6.1757 438 165 5 0 0 0 0.73389 1 71233 71233 1.0715 0.72083 1 27090000 38143 5606 25527 26015 44728 44728 0.18286790662000385 LVKQSVAPGF 10 Unmodified _LVKQSVAPGF_ 0 0 0 REV__ENST00000402527.5_1_22:39714502-39715605:-|nuORF REV__ENST00000402527.5_1_22:39714502-39715605:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3046875 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 77.258 1 77.308 76.808 77.808 0.05011 0 0 0 0.96627 1 42637 42637 4.3292 1.44 1 + 38144 26613 25528 26016 44729 44729 0.0762661985700106 LVKSGERVI 9 Unmodified _LVKSGERVI_ 0 0 0 nc|ENSG00000167633|P43629-2|KIR3DL1;ENSG00000167633|ENST00000391728|KIR3DL1 nc|ENSG00000167633|P43629-2|KIR3DL1 nc|ENSG00000167633|P43629-2|KIR3DL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8114624023438 2 500.811116 999.60768 -0.62289 -0.00031195 1.2583 0.00063016 0.63539 0.00031821 500.8118546034254 36.749 0.19678 36.5 36.383 36.579 -0.2497 12 8 2 0 0 0 0.2143 1 19312 19312 21.747 0 1 2836900 38145 7644 25529 26017 44730 44730 0.10786022231286552 LVKSHIYIL 9 Unmodified _LVKSHIYIL_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5626831054688 3 362.562099 1084.66447 0.66057 0.0002395 0.3886 0.00014089 1.0492 0.00038039 362.56225968432045 47.416 0.38382 47.377 47.177 47.561 -0.038647 45 17 3 0 0 0 0.39863 2 25487 25487;25590 8.1555 0 1 7879900 + 38146 19657 25530 26018 44731;44732 44731 0.12552069787784603 LVKSRPFG 8 Unmodified _LVKSRPFG_ 0 0 0 REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2740478515625 2 452.27417 902.533787 NaN NaN NaN NaN NaN NaN NaN 46.455 1 46.118 45.618 46.618 -0.33664 0 0 0 0.4637 1 24865 24865 44.407 8.3628 1 + 38147 23942 25531 26019 44733 44733 0.07862098859618527 LVKSRPFG 8 Unmodified _LVKSRPFG_ 0 0 0 REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2744140625 2 452.27417 902.533787 1.0456 0.00047289 -0.4476 -0.00020244 0.59799 0.00027045 452.27379391507577 46.196 0.27846 46.163 45.968 46.246 -0.033417 21 12 2 0 0 0 0.48669 1 24822 24822 36.044 1.8569 1 4033100 + 38148 23942 25531 26019 44734 44734 0.07862098859618527 LVKSRPFG 8 Unmodified _LVKSRPFG_ 0 0 0 REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF REV__ENST00000490187.1_1_20:25205773-25206230:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 452.27417 902.533787 1.0456 0.00047289 -0.4476 -0.00020244 0.59799 0.00027045 452.27379391507577 46.196 0.27846 46.163 45.968 46.246 -0.033417 0 0 NaN 36.044 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4033100 + 38149 23942 25531 26019 0.07862098859618527 LVKVKLFVF 9 Unmodified _LVKVKLFVF_ 0 0 0 ENST00000560179.1_1_15:76508902-76518306:-|nuORF ENST00000560179.1_1_15:76508902-76518306:-|nuORF ENST00000560179.1_1_15:76508902-76518306:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.86328125 2 546.862621 1091.71069 NaN NaN NaN NaN NaN NaN NaN 55.68 1 55.68 55.18 56.18 0 0 0 0 0.85737 1 30940 30940 0.6015 0 1 38150 15306 25532 26020 44735 44735 0.16850134689889273 LVKVKVIKLV 10 Unmodified _LVKVKVIKLV_ 0 0 0 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1907958984375 3 380.281044 1137.8213 NaN NaN NaN NaN NaN NaN NaN 21.427 1 21.427 20.927 21.927 0 0 0 0 1.0061 1 10841 10841 0 0 1 38151 9295 25533 26021 44736 44736 0.25790354678110816 LVKVKVIKLV 10 Unmodified _LVKVKVIKLV_ 0 0 0 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5245361328125 3 380.281044 1137.8213 NaN NaN NaN NaN NaN NaN NaN 21.482 1 21.482 20.982 21.982 0 0 0 0 1.0061 1 10873 10873 0 0 1 38152 9295 25533 26021 44737 44737 0.25790354678110816 LVKVKVIKLV 10 Unmodified _LVKVKVIKLV_ 0 0 0 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 ENSG00000184867|ENST00000356824|ARMCX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2803649902344 3 380.281044 1137.8213 NaN NaN NaN NaN NaN NaN NaN 21.728 1 21.741 21.241 22.241 0.013796 0 0 0 1.0061 1 11142 11142 0 0 1 38153 9295 25533 26021 44738 44738 0.25790354678110816 LVKVSDHG 8 Unmodified _LVKVSDHG_ 0 0 0 ENSG00000280165|ENST00000409204|PCDH20 ENSG00000280165|ENST00000409204|PCDH20 ENSG00000280165|ENST00000409204|PCDH20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 857.4847412109375 1 854.473043 853.465767 1.4264 0.0012188 0.50605 0.0004324 1.9325 0.0016512 854.4733726670526 105.46 0.14846 99.283 99.211 99.359 -6.1757 77 30 4 0 0 0 0.80676 1 70663 70663 2.5775 1.8871 1 99993000 38154 10946 25534 26022 44739 44739 0.03317229208948902 LVLAWLVSV 9 Unmodified _LVLAWLVSV_ 0 0 0 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7953796386719 2 500.315503 998.616454 0.59682 0.0002986 -2.5308 -0.0012662 -1.934 -0.0009676 500.3135576093687 67.054 0.19966 67.072 66.961 67.161 0.018036 18 9 3 0 0 0 0.20528 1 36839 36839 8.5933 0 1 1283900 + 38155 29858 25535 26023 44740 44740 0.11708995867752492 LVLCVEPVSL 10 Unmodified _LVLCVEPVSL_ 0 0 0 REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF REV__ENST00000325042.2_1_7:22765745-22766153:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3134155273438 2 536.309561 1070.60457 0.90182 0.00048366 1.7009 0.00091221 2.6027 0.0013959 536.3106852002807 38.074 0.3215 33.705 33.548 33.87 -4.3689 33 18 2 0 0 0 0.18021 1 22401 22401 36.127 2.6821 1 12282000 + 38156 25544 25536 26024 44741 44741 0.07209011062241188 LVLDLYKKI 9 Unmodified _LVLDLYKKI_ 0 0 0 REV__ENST00000486257.5_1_3:114027142-114027259:+|nuORF REV__ENST00000486257.5_1_3:114027142-114027259:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.90576171875 3 368.905754 1103.69543 NaN NaN NaN NaN NaN NaN NaN 57.141 1 57.075 56.575 57.575 -0.066036 0 0 0 0.84021 1 31098 31098 2.7352 0 1 + 38157 27797 25537 26025 44742 44742 0.14773223102019983 LVLEQPQI 8 Unmodified _LVLEQPQI_ 0 0 0 REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2785034179688 2 470.279118 938.543683 0.27644 0.00013 -0.16262 -7.6479E-05 0.11381 5.3524E-05 470.27855605098614 69.995 0.69901 69.995 69.797 70.496 0 147 64 3 0 0 0 0.37649 1 39036 39036 46.921 3.0626 1 83078000 + 38158 26335 25538 26026 44743 44743 0.07195242074340058 LVLEQPQI 8 Unmodified _LVLEQPQI_ 0 0 0 REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF REV__ENST00000381630.2_1_20:1457797-1472026:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2795715332031 2 470.279118 938.543683 0.30672 0.00014424 0.80577 0.00037893 1.1125 0.00052318 470.2791491885973 78.36 1.3542 72.185 71.702 73.056 -6.1757 187 79 4 0 0 0 0.28922 4 51160 51032;51160;51286;51544 56.541 9.1686 1 353150000 + 38159 26335 25538 26026 44744;44745;44746;44747 44745 0.07195242074340058 LVLFFTRR 8 Unmodified _LVLFFTRR_ 0 0 0 REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2185363769531 3 351.218555 1050.63383 NaN NaN NaN NaN NaN NaN NaN 0.41978 1 0.34586 -0.15414 0.84586 -0.07392 0 0 0 0.97444 1 211 211 0.45834 0.18932 1 + 38160 26625 25539 26027 44748 44748 0.110543361934333 LVLFFTRR 8 Unmodified _LVLFFTRR_ 0 0 0 REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF REV__ENST00000403097.5_1_7:50860326-50860620:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2192993164062 3 351.218555 1050.63383 NaN NaN NaN NaN NaN NaN NaN 0.59348 1 0.52019 0.020193 1.0202 -0.073289 0 0 0 0.97444 1 296 296 0.45834 0.18932 1 + 38161 26625 25539 26027 44749 44749 0.110543361934333 LVLFLVKLL 9 Unmodified _LVLFLVKLL_ 0 0 0 REV__ENSG00000141873|ENST00000269740|SLC39A3 REV__ENSG00000141873|ENST00000269740|SLC39A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.2510986328125 3 353.250973 1056.73109 NaN NaN NaN NaN NaN NaN NaN 3.6987 1 3.6266 3.1266 4.1266 -0.072029 0 0 0 0.8622 1 1822 1822 0 0 1 + 38162 20554 25540 26028 44750 44750 0.20499305349721908 LVLGYAVIKL 10 Unmodified _LVLGYAVIKL_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.9081115722656 3 363.574116 1087.70052 -0.23962 -8.7118E-05 -0.14927 -5.4269E-05 -0.38888 -0.00014139 363.5739954875576 56.342 0.2051 56.274 56.134 56.339 -0.068741 13 10 2 0 0 0 0.46077 1 30639 30639 18.373 3.1246 1 4554700 + 38163 18213 25541 26029 44751 44751 0.16017526964651552 LVLHKYLQA 9 Unmodified _LVLHKYLQA_ 0 0 0 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 ENSG00000130054|ENST00000252338|NALF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.222412109375 3 362.221965 1083.64407 NaN NaN NaN NaN NaN NaN NaN 74.526 1 74.05 73.55 74.55 -0.47588 0 0 0 0.85359 1 40789 40789 1.0715 0.80244 1 38164 4176 25542 26030 44752 44752 0.10558899127977384 LVLIDKKAT 9 Unmodified _LVLIDKKAT_ 0 0 0 REV__ENST00000495755.1_1_6:33235423-33235928:-|nuORF REV__ENST00000495755.1_1_6:33235423-33235928:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8252868652344 2 500.823692 999.632832 1.701 0.00085192 1.3376 0.00066992 3.0387 0.0015218 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.59532 1 73377 73377 1.6526 0.96225 1 7573500 + 38165 27952 25543 26031 44753 44753 0.13300077033841262 LVLIHVPS 8 Unmodified _LVLIHVPS_ 0 0 0 REV__ENST00000297979.9_1_9:97844893-97849221:+|nuORF REV__ENST00000297979.9_1_9:97844893-97849221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.277587890625 2 439.278921 876.543289 -0.35548 -0.00015616 -2.3475 -0.0010312 -2.703 -0.0011874 439.2777807750038 103.25 0.09169 103.2 103.14 103.23 -0.047928 8 3 3 0 0 0 0.80992 1 57342 57342 0.69038 0 1 6215600 + 38166 25286 25544 26032 44754 44754 0.10007867145134242 LVLIVIKIF 9 Unmodified _LVLIVIKIF_ 0 0 0 REV__ENST00000397885.2_1_9:2837287-2844066:-|nuORF REV__ENST00000397885.2_1_9:2837287-2844066:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.2506103515625 3 353.250973 1056.73109 NaN NaN NaN NaN NaN NaN NaN 2.9317 1 2.8597 2.3597 3.3597 -0.072029 0 0 0 0.8622 1 1446 1446 0 0 1 + 38167 26548 25545 26033 44755 44755 0.20499305349676433 LVLKKLDKK 9 Unmodified _LVLKKLDKK_ 0 0 0 REV__ENSG00000104332|ENST00000220772|SFRP1 REV__ENSG00000104332|ENST00000220772|SFRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2542724609375 3 362.253265 1083.73797 NaN NaN NaN NaN NaN NaN NaN 68.005 1 68.03 67.53 68.53 0.025146 0 0 0 0.85359 1 37347 37347 1.0715 0 1 + 38168 18351 25546 26034 44756 44756 0.19944618230260858 LVLKSLIIY 9 Unmodified _LVLKSLIIY_ 0 0 0 ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000531050.5_1_6:128321419-128718758:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.8423461914062 2 531.352086 1060.68962 0.94023 0.00049959 -0.42935 -0.00022814 0.51088 0.00027146 531.352013533536 99.289 0.14649 93.114 93.028 93.174 -6.1757 12 8 2 0 0 0 0.047927 1 66061 66061 37.974 0 1 42014000 38169 14900 25547 26035 44757 44757 0.16170124590394153 LVLLEFWVL 9 Unmodified _LVLLEFWVL_ 0 0 0 REV__ENST00000406189.3_1_18:48702442-48702544:-|nuORF REV__ENST00000406189.3_1_18:48702442-48702544:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8988037109375 3 377.898599 1130.67397 -0.095522 -3.6098E-05 0.23545 8.8975E-05 0.13993 5.2878E-05 377.8985835313887 32.755 0.32552 32.785 32.539 32.864 0.029747 31 13 3 0 0 0 0.21893 1 17085 17085 0.23584 0 1 6877500 + 38170 26654 25548 26036 44758 44758 0.11385838073329069 LVLLFEGRK 9 Unmodified _LVLLFEGRK_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.8941345214844 3 358.893848 1073.65972 0.47475 0.00017038 0.073458 2.6364E-05 0.54821 0.00019675 358.89388174218425 47.608 0.48795 47.57 47.361 47.849 -0.038647 62 22 4 0 0 0 0.11784 1 25613 25613 31.268 1.4278 1 54428000 38171 1608 25549 26037 44759 44759 0.12583185645030426 LVLLFEGRK 9 Unmodified _LVLLFEGRK_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.894287109375 3 358.893848 1073.65972 1.4902 0.00053482 0.36497 0.00013098 1.8552 0.00066581 358.8938747081314 53.061 0.35096 47.257 47.05 47.401 -5.8042 38 19 3 0 0 0 0.078314 1 33559 33559 38.176 1.6694 1 38270000 38172 1608 25549 26037 44760 44760 0.12583185645030426 LVLPFKLFC 9 Unmodified _LVLPFKLFC_ 0 0 0 REV__ENST00000367462.4_1_1:190424055-190446625:-|nuORF REV__ENST00000367462.4_1_1:190424055-190446625:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3218383789062 2 540.319731 1078.62491 1.4313 0.00077336 2.1795 0.0011776 3.6108 0.001951 540.3210646296385 104.6 0.13873 98.424 98.338 98.476 -6.1757 15 7 3 0 0 0 0.61801 1 70067 70067 0.6015 0 1 29724000 + 38173 25986 25550 26038 44761 44761 0.08874226512716632 LVLPGRRA 8 Unmodified _LVLPGRRA_ 0 0 0 ENST00000483825.5_1_1:167400597-167400867:-|nuORF ENST00000483825.5_1_1:167400597-167400867:-|nuORF ENST00000483825.5_1_1:167400597-167400867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2861633300781 2 441.287611 880.56067 -0.32502 -0.00014343 -0.97474 -0.00043014 -1.2998 -0.00057356 441.2871191587229 102.38 0.73093 102.33 102.08 102.81 -0.045853 38 24 2 0 0 0 0.80975 1 56864 56864 0.79363 0 1 3361300 38174 14138 25551 26039 44762 44762 0.11561207470788304 LVLRLVLRFHK 11 Unmodified _LVLRLVLRFHK_ 0 0 0 REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 697.461181640625 2 697.461356 1392.90816 NaN NaN NaN NaN NaN NaN NaN 96.865 1 96.865 96.365 97.365 0 0 0 0 0.9435 1 53527 53527 0 0 1 + 38175 19432 25552 26040 44763 44763 0.22742153952549415 LVLRRRKRRRI 11 Unmodified _LVLRRRKRRRI_ 0 0 0 ENST00000496567.5_1_9:97782205-97782394:+|nuORF ENST00000496567.5_1_9:97782205-97782394:+|nuORF ENST00000496567.5_1_9:97782205-97782394:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 761.5216064453125 2 761.523676 1521.0328 NaN NaN NaN NaN NaN NaN NaN 23.61 1 23.631 23.131 24.131 0.021185 0 0 0 0.9435 1 12164 12164 0 0 1 38176 14372 25553 26041 44764 44764 0.2931246421242122 LVLSAVIS 8 Unmodified _LVLSAVIS_ 0 0 0 REV__ENSG00000143315|ENST00000368090|PIGM;REV__ENSG00000131482|ENST00000253801|G6PC1 REV__ENSG00000143315|ENST00000368090|PIGM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2574157714844 2 401.257654 800.500755 NaN NaN NaN NaN NaN NaN NaN 46.107 1 45.77 45.27 46.27 -0.33664 0 0 0 0.50394 1 24664 24664 40.449 0 1 + 38177 20622;19797 25554 26042 44765 44765 0.09252472016896718 LVLSQFSK 8 Unmodified _LVLSQFSK_ 0 0 0 REV__ENSG00000163075|ENST00000413369|CFAP221 REV__ENSG00000163075|ENST00000413369|CFAP221 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2734985351562 2 461.273835 920.533118 0.37776 0.00017425 0.60027 0.00027689 0.97803 0.00045114 461.27373399941854 78.313 0.97022 72.137 71.773 72.743 -6.1757 125 58 3 0 0 0 0.44629 2 51090 51090;51611 39.957 0 1 80832000 + 38178 21722 25555 26043 44766;44767 44766 0.06967259419911898 LVLTKNSF 8 Unmodified _LVLTKNSF_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000486339.6_1_16:2155757-2157078:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2728881835938 2 461.273835 920.533118 0.47977 0.00022131 -2.0264 -0.00093471 -1.5466 -0.0007134 461.27218994169255 69.995 0.51713 69.995 69.816 70.333 0 106 56 2 0 0 0 0.76859 1 39081 39081 11.114 0.93107 1 13141000 + 38179 17027;27801 25556 26044 44768 44768 0.06967259419900529 LVLTLPVFLFL 11 Unmodified _LVLTLPVFLFL_ 0 0 0 ENSG00000171049|ENST00000340023|FPR2 ENSG00000171049|ENST00000340023|FPR2 ENSG00000171049|ENST00000340023|FPR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.1616821289062 2 637.909768 1273.80498 NaN NaN NaN NaN NaN NaN NaN 104.4 1 104.35 103.85 104.85 -0.048737 0 0 0 0.94301 1 57965 57965 0.35063 0 1 38180 8056 25557 26045 44769 44769 0.1790322872136585 LVLTNTGG 8 Unmodified _LVLTNTGG_ 0 0 0 REV__ENST00000583309.1_1_19:18546312-18546668:-|nuORF REV__ENST00000583309.1_1_19:18546312-18546668:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.72119140625 2 387.721436 773.428318 NaN NaN NaN NaN NaN NaN NaN 25.746 1 25.746 25.246 26.246 0 0 0 0 0.9706 1 13210 13210 6.3541 0 1 + 38181 18444 25558 26046 44770 44770 0.03254137943349633 LVLTRPNTY 9 Unmodified _LVLTRPNTY_ 0 0 0 nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.8089599609375 2 538.808574 1075.60259 0.20553 0.00011074 0.34567 0.00018625 0.55121 0.000297 538.8087960682151 37.594 0.16986 37.594 37.51 37.68 0 14 8 2 0 0 0 0.34999 1 20039 20039 14.838 3.198 1 2110000 38182 6275 25559 26047 44771 44771 0.06781718368665679 LVLTRPNTY 9 Unmodified _LVLTRPNTY_ 0 0 0 nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8079833984375 2 538.808574 1075.60259 -0.12022 -6.4774E-05 0.661 0.00035615 0.54078 0.00029138 538.8089584486714 37.869 0.41753 37.598 37.485 37.902 -0.27133 31 20 3 0 0 0 0.07916 1 19908 19908 37.974 11.09 1 5882600 38183 6275 25559 26047 44772 44772 0.06781718368665679 LVLTRPNTY 9 Unmodified _LVLTRPNTY_ 0 0 0 nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.808837890625 2 538.808574 1075.60259 0.97137 0.00052338 -0.37177 -0.00020031 0.5996 0.00032307 538.8084756194492 42.652 0.36243 37.967 37.779 38.142 -4.6846 42 23 2 0 0 0 0.12424 1 25777 25777 30.637 5.2372 1 32155000 38184 6275 25559 26047 44773 44773 0.06781718368665679 LVLTSHTAV 9 Unmodified _LVLTSHTAV_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7771606445312 2 470.776742 939.538931 NaN NaN NaN NaN NaN NaN NaN 72.237 1 71.761 71.261 72.261 -0.47609 0 0 0 0.82015 1 39532 39532 5.2307 0.47466 1 + 38185 17379 25560 26048 44774 44774 0.0667435793156983 LVLYNARP 8 Unmodified _LVLYNARP_ 0 0 0 ENSG00000127578|ENST00000319070|WFIKKN1 ENSG00000127578|ENST00000319070|WFIKKN1 ENSG00000127578|ENST00000319070|WFIKKN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.27685546875 2 473.279452 944.544351 0.33215 0.0001572 -0.85775 -0.00040596 -0.5256 -0.00024875 473.278865350769 54.145 0.25467 53.678 53.567 53.822 -0.46664 38 12 4 0 0 0 0.75262 1 29306 29306 12.532 0 1 8672900 38186 4018 25561 26049 44775 44775 0.06986081514025955 LVMAPRTVL 9 Oxidation (M) _LVM(Oxidation (M))APRTVL_ LVM(1)APRTVL LVM(44)APRTVL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.30224609375 2 508.30207 1014.58959 0.967 0.00049153 -0.0037628 -1.9127E-06 0.96323 0.00048961 508.30209913976637 50.461 0.55491 44.922 44.725 45.28 -5.5391 45 34 2 0 0 0 0.05483 2 31835 31632;31835 43.772 7.9337 1 33079000 38187 10636 25562 26050 44776;44777 44777 1707 0.08287563984902135 LVMAPRTVL 9 Unmodified _LVMAPRTVL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3049926757812 2 500.304613 998.594672 1.0783 0.00053946 0.035758 1.789E-05 1.114 0.00055735 500.3045459887139 59.901 0.39083 53.787 53.65 54.041 -6.1147 54 21 3 0 0 0 0.044011 2 38492 38492;38619 47.749 15.443 1 53985000 38188 10636 25562 26051 44778;44779 44778 0.09531867847522335 LVMISKGT 8 Unmodified _LVMISKGT_ 0 0 0 ENST00000416249.1_1_10:112629578-112631155:+|nuORF ENST00000416249.1_1_10:112629578-112631155:+|nuORF ENST00000416249.1_1_10:112629578-112631155:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.7489013671875 2 424.749139 847.483725 1.2805 0.00054387 2.096 0.00089028 3.3765 0.0014342 424.7502401954046 37.983 0.34299 33.615 33.437 33.78 -4.3689 33 20 2 0 0 0 0.71527 1 22304 22304 15.847 0 1 18337000 38189 13037 25563 26052 44780 44780 0.05388228139452167 LVMISKGT 8 Unmodified _LVMISKGT_ 0 0 0 ENST00000416249.1_1_10:112629578-112631155:+|nuORF ENST00000416249.1_1_10:112629578-112631155:+|nuORF ENST00000416249.1_1_10:112629578-112631155:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 424.749139 847.483725 0.092269 3.9191E-05 2.9671 0.0012603 3.0594 0.0012995 424.75047467496717 33.617 0.35438 33.646 33.483 33.837 0.028931 0.015729 0.00016743 NaN 15.847 41 15 4 NaN NaN NaN NaN 0 NaN NaN 0 23677000 38190 13037 25563 26052 0.05388228139452167 LVMLTRLVL 9 Unmodified _LVMLTRLVL_ 0 0 0 ENST00000453289.1_1_2:27580075-27580716:+|nuORF ENST00000453289.1_1_2:27580075-27580716:+|nuORF ENST00000453289.1_1_2:27580075-27580716:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2304077148438 3 353.231584 1056.67292 0.29284 0.00010344 -2.8911 -0.0010212 -2.5983 -0.00091779 353.2304527351643 49.16 0.2914 49.116 48.964 49.255 -0.04369 20 13 2 0 0 0 0.30202 1 26575 26575 17.113 5.6182 1 1219200 38191 13553 25564 26053 44781 44781 0.14685300432756776 LVMPTERIQ 9 Unmodified _LVMPTERIQ_ 0 0 0 REV__ENSG00000120832|ENST00000240050|MTERF2 REV__ENSG00000120832|ENST00000240050|MTERF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8703918457031 3 362.870715 1085.59032 0.35048 0.00012718 -1.5282 -0.00055454 -1.1777 -0.00042736 362.87004986358403 40.448 0.54399 40.453 40.128 40.672 0.0050583 63 25 3 0 0 0 0.58822 1 21479 21479 2.086 0 1 7130700 + 38192 19264 25565 26054 44782 44782 0.05094358633959928 LVNAAFAELF 10 Unmodified _LVNAAFAELF_ 0 0 0 REV__ENSG00000033100|ENST00000035307|CHPF2 REV__ENSG00000033100|ENST00000035307|CHPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7974243164062 2 547.797675 1093.5808 1.0121 0.00055443 -1.1664 -0.00063897 -0.15432 -8.4539E-05 547.7970594799676 95.042 1.874 88.867 87.622 89.496 -6.1757 211 108 3 0 0 0 0.44373 1 62942 62942 19.257 4.4187 1 131530000 + 38193 17153 25566 26055 44783 44783 0.03774913620077314 LVNEIVVP 8 Unmodified _LVNEIVVP_ 0 0 0 REV__ENST00000505513.1_1_4:25146420-25156786:-|nuORF REV__ENST00000505513.1_1_4:25146420-25156786:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 883.5314331054688 1 882.529495 881.522219 0.61899 0.00054627 -2.7847 -0.0024575 -2.1657 -0.0019113 882.528865034055 99.316 0.14049 93.14 93.048 93.188 -6.1757 11 8 2 0 0 0 0.55063 1 66080 66080 30.198 2.0251 1 29543000 + 38194 18665 25567 26056 44784 44784 0.07671857045613706 LVNEIVVP 8 Unmodified _LVNEIVVP_ 0 0 0 REV__ENST00000505513.1_1_4:25146420-25156786:-|nuORF REV__ENST00000505513.1_1_4:25146420-25156786:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 882.4598999023438 1 882.529495 881.522219 0.61899 0.00054627 -2.7847 -0.0024575 -2.1657 -0.0019113 882.528865034055 99.316 0.14049 93.14 93.048 93.188 -6.1757 11 8 2 0 0 0 8.7369 1 66021 66021 26.341 0 1 29543000 + 38195 18665 25567 26056 44785 44785 0.07671857045613706 LVNENCELKI 10 Unmodified _LVNENCELKI_ 0 0 0 nc|ENSG00000166484|Q13164-4|MAPK7;ENST00000570306.5_1_17:19283765-19285121:+|nuORF;nc|ENSG00000166484|Q13164-3|MAPK7;ENST00000490660.2_1_17:19282213-19285121:+|nuORF;ENSG00000166484|ENST00000395604|MAPK7;nc|ENSG00000166484|Q13164-2|MAPK7 nc|ENSG00000166484|Q13164-4|MAPK7;ENSG00000166484|ENST00000395604|MAPK7 ENSG00000166484|ENST00000395604|MAPK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2105712890625 3 392.209396 1173.60636 0.42916 0.00016832 1.0947 0.00042934 1.5238 0.00059766 392.2097412169767 16.388 0.2012 13.831 13.732 13.933 -2.557 59 25 3 0 0 0 0.59286 1 8451 8451 11.518 0 1 7787400 38196 15475;7499 25568 26057 44786 44786 0.026500200802047402 LVNENFEEY 9 Unmodified _LVNENFEEY_ 0 0 0 nc|ENSG00000114115|P09455|RBP1;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1 nc|ENSG00000114115|P09455|RBP1 nc|ENSG00000114115|P09455|RBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7615966796875 2 578.761486 1155.50842 -0.42916 -0.00024838 1.1146 0.0006451 0.68547 0.00039672 578.7615629549197 48.589 0.49812 48.589 48.33 48.828 0 79 23 5 0 0 0 0.12424 1 26724 26724 30.637 20.563 1 174850000 38197 3019 25569 26058 44787 44787 -0.06311465244129977 LVNENFEEY 9 Unmodified _LVNENFEEY_ 0 0 0 nc|ENSG00000114115|P09455|RBP1;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1 nc|ENSG00000114115|P09455|RBP1 nc|ENSG00000114115|P09455|RBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7611694335938 2 578.761486 1155.50842 0.60978 0.00035292 -0.9853 -0.00057026 -0.37553 -0.00021734 578.7607530989784 48.701 0.23867 48.657 48.495 48.734 -0.04369 23 11 3 0 0 0 0.1773 1 26272 26272 25.399 12.357 1 3328700 38198 3019 25569 26058 44788 44788 -0.06311465244129977 LVNENFEEY 9 Unmodified _LVNENFEEY_ 0 0 0 nc|ENSG00000114115|P09455|RBP1;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1 nc|ENSG00000114115|P09455|RBP1 nc|ENSG00000114115|P09455|RBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.761962890625 2 578.761486 1155.50842 0.62093 0.00035937 0.10507 6.0809E-05 0.72599 0.00042018 578.7614258306955 56.34 0.58212 50.363 50.067 50.649 -5.9769 101 33 4 0 0 0 0.039985 2 36035 35907;36035 49.933 24.534 1 373550000 38199 3019 25569 26058 44789;44790 44790 -0.06311465244129977 LVNENFEEY 9 Unmodified _LVNENFEEY_ 0 0 0 nc|ENSG00000114115|P09455|RBP1;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1 nc|ENSG00000114115|P09455|RBP1 nc|ENSG00000114115|P09455|RBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1156.52099609375 1 1156.5157 1155.50842 0.49755 0.00057542 0.68093 0.00078751 1.1785 0.0013629 1156.515920679827 56.366 0.34225 50.389 50.187 50.529 -5.9769 24 19 2 0 0 0 8.5409E-07 1 36013 36013 163.69 37.121 1 26266000 38200 3019 25569 26058 44791 44791 -0.06311465244129977 LVNHDFSPLEY 11 Unmodified _LVNHDFSPLEY_ 0 0 0 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3253173828125 2 667.324785 1332.63502 1.1328 0.00075594 0.29969 0.00019999 1.4325 0.00095593 667.3248287456923 64.371 0.51457 58.196 57.955 58.47 -6.1757 59 27 3 0 0 0 0.178 1 41748 41748 33.445 1.4074 1 34552000 38201 16212 25570 26059 44792 44792 -0.017995390189980753 LVNHDFSPLEY 11 Unmodified _LVNHDFSPLEY_ 0 0 0 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 667.324785 1332.63502 0.207 0.00013814 0.34614 0.00023099 0.55314 0.00036912 667.3248436000692 57.83 0.24549 57.83 57.699 57.944 0 -0.1519 0.00022723 NaN 33.445 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2116300 38202 16212 25570 26059 -0.017995390189980753 LVNHDFSPLEY 11 Unmodified _LVNHDFSPLEY_ 0 0 0 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 667.324785 1332.63502 0.26556 0.00017722 0.0078581 5.2439E-06 0.27342 0.00018246 667.32462073168 58.412 0.29197 57.921 57.778 58.07 -0.49079 -0.061388 -0.00022425 NaN 33.445 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 9328700 38203 16212 25570 26059 -0.017995390189980753 LVNHDFSPLEY 11 Unmodified _LVNHDFSPLEY_ 0 0 0 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 667.324785 1332.63502 1.1328 0.00075594 0.29969 0.00019999 1.4325 0.00095593 667.3248287456923 64.371 0.51457 58.196 57.955 58.47 -6.1757 0.21329 0.00016524 NaN 33.445 59 27 3 NaN NaN NaN NaN 0 NaN NaN 0 34552000 38204 16212 25570 26059 -0.017995390189980753 LVNLEPAP 8 Unmodified _LVNLEPAP_ 0 0 0 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7444763183594 2 426.744911 851.475269 0.10586 4.5176E-05 -0.63615 -0.00027147 -0.53028 -0.0002263 426.74463748259967 76.989 0.50696 76.989 76.708 77.215 0 86 31 3 0 0 0 0.26159 3 42787 42692;42787;42893 60.39 22.238 1 18457000 38205 6689 25571 26060 44793;44794;44795 44794 0.04358997494466621 LVNLEPAP 8 Unmodified _LVNLEPAP_ 0 0 0 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7451171875 2 426.744911 851.475269 -0.6588 -0.00028114 0.29631 0.00012645 -0.36249 -0.00015469 426.7449837760361 77.497 0.46634 77.014 76.803 77.269 -0.4826 53 21 3 0 0 0 0.3408 2 42361 42361;42461 50.855 20.218 1 11313000 38206 6689 25571 26060 44796;44797 44796 0.04358997494466621 LVNLEPAP 8 Unmodified _LVNLEPAP_ 0 0 0 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7445983886719 2 426.744911 851.475269 0.38821 0.00016567 0.38649 0.00016493 0.7747 0.0003306 426.7450614685187 94.061 0.32339 93.641 93.435 93.758 -0.42043 26 16 2 0 0 0 0.64853 1 51350 51350 21.747 0.87544 1 756590 38207 6689 25571 26060 44798 44798 0.04358997494466621 LVNLEPAP 8 Unmodified _LVNLEPAP_ 0 0 0 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.7646789550781 2 426.744911 851.475269 0.16418 7.0062E-05 3.6729 0.0015674 3.8371 0.0016374 426.7460883786104 77.038 0.31074 77.088 76.91 77.221 0.05011 23 12 2 0 0 0 8.7369 1 42506 42506 30.225 12.09 1 1197100 38208 6689 25571 26060 44799 44799 0.04358997494466621 LVNLEPAP 8 Unmodified _LVNLEPAP_ 0 0 0 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 ENSG00000160161|ENST00000291495|CILP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.7453002929688 2 426.744911 851.475269 0.79757 0.00034036 -0.94561 -0.00040353 -0.14804 -6.3174E-05 426.7448008989126 85.702 0.57248 79.527 79.277 79.85 -6.1757 76 32 3 0 0 0 0.42423 1 56374 56374 42.095 3.9434 1 80673000 38209 6689 25571 26060 44800 44800 0.04358997494466621 LVNLKQVIIH 10 Unmodified _LVNLKQVIIH_ 0 0 0 ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560505.1_1_15:91453893-91454296:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3793334960938 2 588.876791 1175.73903 1.4744 0.00086823 0.28446 0.00016751 1.7588 0.0010357 589.3787610934982 108.47 0.25024 102.29 102.19 102.44 -6.1757 62 39 2 0 0 0 0.72247 1 72516 72516 0.40072 0 1 5539900 38210 9837 25572 26061 44801 44801 0.1581883259918868 LVNLRHLIL 9 Unmodified _LVNLRHLIL_ 0 0 0 ENSG00000126243|ENST00000246529|LRFN3 ENSG00000126243|ENST00000246529|LRFN3 ENSG00000126243|ENST00000246529|LRFN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8584594726562 2 545.858401 1089.70225 1.4813 0.00080858 -1.4595 -0.00079666 0.021835 1.1919E-05 545.8577927812177 104.84 0.099304 98.663 98.594 98.693 -6.1757 12 8 2 0 0 0 0.58865 1 70180 70180 2.0598 1.4583 1 4834200 38211 3935 25573 26062 44802 44802 0.16098580773268623 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8651123046875 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 106.44 1 100.26 99.765 100.76 -6.1757 0 0 0 0.85798 1 71248 71248 0.52476 0.066424 1 + 38212 26993 25574 26063 44803 44803 0.15222563427710156 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.86474609375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 106.61 1 100.44 99.939 100.94 -6.1757 0 0 0 0.85798 1 71357 71357 0.52476 0 1 + 38213 26993 25574 26063 44804 44804 0.15222563427710156 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8646850585938 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 106.97 1 100.79 100.29 101.29 -6.1757 0 0 0 0.85798 1 71573 71573 0.52476 0.066424 1 + 38214 26993 25574 26063 44805 44805 0.15222563427710156 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8644409179688 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.04 1 101.86 101.36 102.36 -6.1757 0 0 0 0.85798 1 72222 72222 0.52476 0.066424 1 + 38215 26993 25574 26063 44806 44806 0.15222563427710156 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8641357421875 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.9 1 102.73 102.23 103.23 -6.1757 0 0 0 0.85798 1 72760 72760 0.52476 0.066424 1 + 38216 26993 25574 26063 44807 44807 0.15222563427710156 LVNRKVKLY 9 Unmodified _LVNRKVKLY_ 0 0 0 REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF REV__ENST00000432746.1_1_7:102781798-102782185:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8648071289062 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 109.09 1 102.91 102.41 103.41 -6.1757 0 0 0 0.85798 1 72874 72874 0.52476 0.066424 1 + 38217 26993 25574 26063 44808 44808 0.15222563427710156 LVPAVQLTSTF 11 Unmodified _LVPAVQLTSTF_ 0 0 0 REV__ENST00000487651.5_1_7:100457734-100458115:+|nuORF REV__ENST00000487651.5_1_7:100457734-100458115:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.7881469726562 2 588.337164 1174.65977 0.63981 0.00037643 -0.80947 -0.00047624 -0.16966 -9.9815E-05 588.3374277049087 99.565 0.092377 93.389 93.324 93.416 -6.1757 7 5 2 0 0 0 0.28953 1 66298 66298 13.042 0 1 19305000 + 38218 27830 25575 26064 44809 44809 0.07943140854376907 LVPEERTFDQ 10 Unmodified _LVPEERTFDQ_ 0 0 0 REV__ENSG00000171132|ENST00000306156|PRKCE REV__ENSG00000171132|ENST00000306156|PRKCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8756713867188 3 411.875182 1232.60372 -0.54639 -0.00022504 1.0778 0.00044393 0.53143 0.00021888 411.8758575520265 17.834 0.099609 17.848 17.799 17.899 0.013865 43 16 4 0 0 0 0.67459 1 8886 8886 5.4027 0 1 2871100 + 38219 22534 25576 26065 44810 44810 -0.003281120530800763 LVPEERTFDQ 10 Unmodified _LVPEERTFDQ_ 0 0 0 REV__ENSG00000171132|ENST00000306156|PRKCE REV__ENSG00000171132|ENST00000306156|PRKCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8760986328125 3 411.875182 1232.60372 -0.11542 -4.7537E-05 0.43261 0.00017818 0.31719 0.00013064 411.87572378348585 17.844 0.11076 17.849 17.774 17.885 0.0050564 14 6 3 0 0 0 0.67459 1 9018 9018 3.0723 0 1 991320 + 38220 22534 25576 26065 44811 44811 -0.003281120530800763 LVPESLTIW 9 Unmodified _LVPESLTIW_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7555541992188 2 529.30005 1056.58555 0.23934 0.00012668 -1.655 -0.00087601 -1.4157 -0.00074933 529.2986250997209 55.179 0.57686 54.701 54.429 55.006 -0.47798 71 27 3 0 0 0 0.20528 1 29962 29962 2.0598 1.2661 1 5275800 38221 9083 25577 26066 44812 44812 0.059517977628502194 LVPKHKGSG 9 Unmodified _LVPKHKGSG_ 0 0 0 REV__ENST00000442815.1_1_21:44781197-44781521:-|nuORF REV__ENST00000442815.1_1_21:44781197-44781521:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.3066711425781 2 461.777077 921.5396 1.7216 0.000795 -4.029 -0.0018605 -2.3074 -0.0010655 461.77671103758087 41.787 0.19997 37.179 37.077 37.277 -4.6079 19 12 2 0 0 0 0.18882 1 25074 25074 15.847 1.2655 1 4054500 + 38222 27105 25578 26067 44813 44813 0.07569197371287828 LVPLDYPMD 9 Unmodified _LVPLDYPMD_ 0 0 0 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 ENSG00000145386|ENST00000274026|CCNA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2974853515625 2 531.762443 1061.51033 0.41286 0.00021954 -0.81422 -0.00043297 -0.40135 -0.00021342 531.7616682834819 87.37 0.27656 86.866 86.761 87.038 -0.50423 15 11 2 0 0 0 0.19298 1 47807 47807 8.5933 2.2392 1 295000 38223 5691 25579 26068 44814 44814 -0.017961277598715242 LVPLLRWGRCL 11 Unmodified _LVPLLRWGRCL_ 0 0 0 REV__ENST00000513995.1_1_4:3487179-3494489:+|nuORF REV__ENST00000513995.1_1_4:3487179-3494489:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.0962524414062 3 442.60067 1324.78018 3.5101 0.0015536 -1.2957 -0.00057346 2.2145 0.00098012 442.59999850315774 97.631 0.4902 97.613 97.437 97.927 -0.018188 35 17 3 0 0 0 0.3058 1 54332 54332 1.4551 1.3603 1 3282600 + 38224 28186 25580 26069 44815 44815 0.13078270367009281 LVPLSRMWRN 10 Unmodified _LVPLSRMWRN_ 0 0 0 REV__ENST00000260327.8_1_15:44783041-44783125:+|nuORF REV__ENST00000260327.8_1_15:44783041-44783125:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3565063476562 2 636.355699 1270.69685 NaN NaN NaN NaN NaN NaN NaN 16.066 1 16.071 15.571 16.571 0.0050564 0 0 0 1.0024 1 8038 8038 0.40072 0.050084 1 + 38225 24959 25581 26070 44816 44816 0.07232533919159323 LVPMPASSSN 10 Unmodified _LVPMPASSSN_ 0 0 0 REV__ENSG00000170485|ENST00000335681|NPAS2 REV__ENSG00000170485|ENST00000335681|NPAS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2727661132812 2 501.749867 1001.48518 NaN NaN NaN NaN NaN NaN NaN 29.969 1 29.999 29.499 30.499 0.030106 0 0 0 0.92825 1 15661 15661 6.7232 0.96273 1 + 38226 22488 25582 26071 44817 44817 -0.015501825624596677 LVPTESPW 8 Unmodified _LVPTESPW_ 0 0 0 REV__ENSG00000175931|ENST00000319380|UBE2O REV__ENSG00000175931|ENST00000319380|UBE2O MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4778442382812 1 928.47746 927.470183 0.66868 0.00062085 -1.2978 -0.001205 -0.62911 -0.00058411 928.4760596892546 75.16 0.43959 74.682 74.405 74.844 -0.47714 39 19 3 0 0 0 0.79669 1 41029 41029 8.5933 0 1 6503100 + 38227 22900 25583 26072 44818 44818 0.00354693631857117 LVQDVSAVPY 10 Unmodified _LVQDVSAVPY_ 0 0 0 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7943725585938 2 545.792589 1089.57063 -0.42817 -0.00023369 1.4555 0.0007944 1.0273 0.0005607 545.7933534868091 76.942 0.44095 76.463 76.235 76.676 -0.47945 66 19 5 0 0 0 0.60478 1 42069 42069 17.113 17.113 1 7646900 + 38228 19930 25584 26073 44819 44819 0.029423058948623293 LVQGTYPGY 9 Unmodified _LVQGTYPGY_ 0 0 0 REV__ENSG00000119720|ENST00000354366|NRDE2 REV__ENSG00000119720|ENST00000354366|NRDE2 MSMS AL20221201_MKP_PDAC_01 4 499.255615234375 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 70.477 1 64.301 63.801 64.801 -6.1757 0 0 0 0.54015 1 46061 46061 14.582 2.9414 1 + 38229 19209 25585 26074 44820 44820 -0.006739213394325816 LVQMEHHIK 9 Unmodified _LVQMEHHIK_ 0 0 0 REV__nc|ENSG00000136146|Q9NPJ6-2|MED4 REV__nc|ENSG00000136146|Q9NPJ6-2|MED4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.5549011230469 3 378.874459 1133.60155 1.2588 0.00047693 -0.98793 -0.0003743 0.27088 0.00010263 378.8743464002927 38.251 0.44204 33.882 33.616 34.058 -4.3689 77 26 4 0 0 0 0.1986 1 22404 22404 6.1918 0 1 103130000 + 38230 20140 25586 26075 44821 44821 0.04009180728098727 LVQNNQLVSL 10 Unmodified _LVQNNQLVSL_ 0 0 0 nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2 nc|ENSG00000025156|Q03933-2|HSF2 nc|ENSG00000025156|Q03933-2|HSF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3251342773438 2 564.324588 1126.63462 0.090578 5.1116E-05 0.27758 0.00015664 0.36816 0.00020776 564.3247513070072 60.566 0.42157 60.076 59.828 60.249 -0.48932 52 20 4 0 0 0 0.2667 2 33052 32954;33052 29.082 6.4235 1 28466000 38231 554 25587 26076 44822;44823 44823 0.0763708605179545 LVQRNVNIF 9 Unmodified _LVQRNVNIF_ 0 0 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;nc|ENSG00000134333|P00338-5|LDHA;nc|ENSG00000134333|P00338-2|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2169799804688 3 368.217102 1101.62948 0.021664 7.977E-06 0.55373 0.00020389 0.57539 0.00021187 368.2172908631367 34.659 0.2338 34.686 34.54 34.774 0.027401 16 10 2 0 0 0 0.54444 1 18274 18274 2.7352 0.23671 1 1819200 38232 4597 25588 26077 44824 44824 0.08272826979828096 LVQSEQFVL 9 Unmodified _LVQSEQFVL_ 0 0 0 REV__nc|ENSG00000115966|P15336-7|ATF2 REV__nc|ENSG00000115966|P15336-7|ATF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7960205078125 2 531.795132 1061.57571 0.93362 0.00049649 -0.90731 -0.0004825 0.026313 1.3993E-05 531.794665522866 79.714 0.32458 79.224 79.053 79.377 -0.48932 27 14 2 0 0 0 0.46577 1 43730 43730 9.3474 0 1 3973300 + 38233 29587 25589 26078 44825 44825 0.04738609757487211 LVQSIWKRKKR 11 Unmodified _LVQSIWKRKKR_ 0 0 0 ENST00000400286.2_1_13:86368440-86368581:-|nuORF ENST00000400286.2_1_13:86368440-86368581:-|nuORF ENST00000400286.2_1_13:86368440-86368581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.458251953125 2 721.459345 1440.90414 NaN NaN NaN NaN NaN NaN NaN 90.937 1 90.937 90.437 91.437 0 0 0 0 0.9435 1 50299 50299 0 0 1 38234 12874 25590 26079 44826 44826 0.201320644587895 LVQTPREDGPG 11 Unmodified _LVQTPREDGPG_ 0 0 0 REV__ENST00000395881.7_1_20:55052141-55059205:+|nuORF REV__ENST00000395881.7_1_20:55052141-55059205:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8024291992188 2 584.801477 1167.5884 0.18081 0.00010574 2.4091 0.0014089 2.5899 0.0015146 584.8025143406268 36.061 0.21762 36.086 35.969 36.187 0.024967 15 9 2 0 0 0 0.50268 1 19099 19099 20.415 2.0414 1 2105900 + 38235 26492 25591 26080 44827 44827 0.011310211496947886 LVQVRSNQK 9 Unmodified _LVQVRSNQK_ 0 0 0 REV__ENSG00000152580|ENST00000282466|IGSF10 REV__ENSG00000152580|ENST00000282466|IGSF10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8789978027344 3 357.88049 1070.61964 NaN NaN NaN NaN NaN NaN NaN 37.872 1 37.889 37.389 38.389 0.01704 0 0 0 0.84737 1 20122 20122 0.96228 0 1 + 38236 21126 25592 26081 44828 44828 0.08715638974467765 LVQYKWPRW 9 Unmodified _LVQYKWPRW_ 0 0 0 ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1 ENSG00000136731|ENST00000259253|UGGT1 ENSG00000136731|ENST00000259253|UGGT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.3533325195312 2 638.353483 1274.69241 NaN NaN NaN NaN NaN NaN NaN 100.03 1 99.877 99.377 100.38 -0.1575 0 0 0 0.85798 1 54608 54608 0.52476 0.12405 1 38237 4850 25593 26082 44829 44829 0.06605392767869489 LVRAAFAL 8 Unmodified _LVRAAFAL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MSMS AL20221201_MKP_PDAC_01 4 430.7713928222656 2 430.771263 859.527973 NaN NaN NaN NaN NaN NaN NaN 90.583 1 84.408 83.908 84.908 -6.1757 0 0 0 0.73801 1 59842 59842 26.341 0 1 38238 1399 25594 26083 44830 44830 0.09259000347935853 LVRCLVGGGGR 11 Unmodified _LVRCLVGGGGR_ 0 0 0 REV__ENST00000487162.1_1_22:50966877-50967150:-|nuORF REV__ENST00000487162.1_1_22:50966877-50967150:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8139038085938 2 543.813667 1085.61278 NaN NaN NaN NaN NaN NaN NaN 95.605 1 95.237 94.737 95.737 -0.36814 0 0 0 0.94165 1 52218 52218 1.3295 0.5359 1 + 38239 27821 25595 26084 44831 44831 0.07340002822252245 LVREDAVLY 9 Unmodified _LVREDAVLY_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2998657226562 2 539.300581 1076.58661 0.053237 2.8711E-05 -0.50327 -0.00027141 -0.45003 -0.0002427 539.3004237997908 43.557 0.32964 43.557 43.341 43.671 0 31 15 3 0 0 0 0.20428 1 23641 23641 22.736 5.6234 1 24963000 38240 3414 25596 26085 44832 44832 0.05138012131760661 LVRFEYKTY 9 Unmodified _LVRFEYKTY_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS AL20221201_MKP_PDAC_01 4 609.8267822265625 2 609.829506 1217.64446 NaN NaN NaN NaN NaN NaN NaN 45.704 1 40.75 40.25 41.25 -4.9549 0 0 0 0.6306 1 28106 28106 11.64 1.5664 1 + 38241 17207 25597 26086 44833 44833 0.044342740571892136 LVRHGKQL 8 Unmodified _LVRHGKQL_ 0 0 0 REV__nc|ENSG00000146839|Q9Y493-5|ZAN REV__nc|ENSG00000146839|Q9Y493-5|ZAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7979125976562 2 475.798343 949.582134 0.83511 0.00039734 0.070049 3.3329E-05 0.90516 0.00043067 475.79827400006064 80.313 0.53233 74.138 73.858 74.391 -6.1757 39 30 2 0 0 0 0.65867 1 52787 52787 20.871 0 1 27605000 + 38242 20849 25598 26087 44834 44834 0.10532592499521343 LVRHGPGL 8 Unmodified _LVRHGPGL_ 0 0 0 ENST00000331285.7_1_17:79867048-79869048:-|nuORF ENST00000331285.7_1_17:79867048-79869048:-|nuORF ENST00000331285.7_1_17:79867048-79869048:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7611694335938 2 424.758687 847.502821 0.23288 9.8916E-05 3.0452 0.0012935 3.278 0.0013924 424.7611615298691 77.821 0.50085 77.873 77.585 78.086 0.052444 59 20 4 0 0 0 0.80311 1 42921 42921 4.756 0 1 14138000 38243 11860 25599 26088 44835 44835 0.07296945545374456 LVRHVRHH 8 Unmodified _LVRHVRHH_ 0 0 0 ENSG00000167967|ENST00000301727|E4F1;ENST00000567111.1_1_16:2284613-2285107:+|nuORF;ENST00000569796.1_1_16:2284571-2284832:+|nuORF ENSG00000167967|ENST00000301727|E4F1 ENSG00000167967|ENST00000301727|E4F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.8774719238281 3 351.877415 1052.61041 NaN NaN NaN NaN NaN NaN NaN 13.833 1 13.785 13.285 14.285 -0.048298 0 0 0 0.97444 1 6710 6710 0.45834 0 1 38244 7687 25600 26089 44836 44836 0.08621335199450186 LVRIADHPEL 10 Unmodified _LVRIADHPEL_ 0 0 0 REV__nc|ENSG00000145113|Q99102-3|MUC4 REV__nc|ENSG00000145113|Q99102-3|MUC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.1938171386719 3 388.224146 1161.65061 0.63911 0.00024812 0.57423 0.00022293 1.2133 0.00047105 388.2242158076053 41.292 0.23572 36.684 36.566 36.801 -4.6079 29 14 3 0 0 0 0.23195 1 24735 24735 8.9762 0 1 16457000 + 38245 20754 25601 26090 44837 44837 0.0762479228869779 LVRLLRKTT 9 Unmodified _LVRLLRKTT_ 0 0 0 nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 MSMS AL20221201_MKP_PDAC_01 4 367.2496337890625 3 367.248514 1098.72371 NaN NaN NaN NaN NaN NaN NaN 103.53 1 97.359 96.859 97.859 -6.1757 0 0 0 0.85525 1 69409 69409 0.86438 0 1 38246 7920 25602 26091 44838 44838 0.17829965801979597 LVRLRKLKF 9 Unmodified _LVRLRKLKF_ 0 0 0 ENST00000481910.1_1_22:26872952-26875347:-|nuORF;ENST00000466781.5_1_22:26864510-26877728:-|nuORF;ENST00000496385.5_1_22:26862186-26875401:-|nuORF;nc|ENSG00000100099|Q9NQG7-2|HPS4;nc|ENSG00000100099|Q9NQG7-3|HPS4;ENSG00000100099|ENST00000398145|HPS4;nc|ENSG00000100099|Q9NQG7-4|HPS4 ENST00000481910.1_1_22:26872952-26875347:-|nuORF ENST00000481910.1_1_22:26872952-26875347:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.9036254882812 2 586.903143 1171.79173 0.81514 0.00047841 -0.065117 -3.8217E-05 0.75003 0.00044019 586.903108823121 73.936 0.53259 67.761 67.445 67.977 -6.1757 58 26 3 0 0 0 0.61256 2 48259 48259;48385 0.6015 0 1 50836000 38247 1754 25603 26092 44839;44840 44839 0.21270835452605752 LVRLSYTI 8 Unmodified _LVRLSYTI_ 0 0 0 REV__nc|ENSG00000142949|P10586-2|PTPRF REV__nc|ENSG00000142949|P10586-2|PTPRF MSMS AL20221201_MKP_PDAC_01 4 482.7958068847656 2 482.794935 963.575317 NaN NaN NaN NaN NaN NaN NaN 104.53 1 98.351 97.851 98.851 -6.1757 0 0 0 0.97444 1 69995 69995 2.3027 0 1 + 38248 20597 25604 26093 44841 44841 0.09207234828261335 LVRMMQIWCE 10 Unmodified _LVRMMQIWCE_ 0 0 0 REV__nc|ENSG00000101557|P54578-2|USP14 REV__nc|ENSG00000101557|P54578-2|USP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.87939453125 3 436.880228 1307.61885 NaN NaN NaN NaN NaN NaN NaN 24.165 1 24.165 23.665 24.665 0 0 0 0 0.99897 1 12338 12338 0.77653 0.50751 1 + 38249 18183 25605 26094 44842 44842 -0.022649830527370796 LVRMMQIWCE 10 Unmodified _LVRMMQIWCE_ 0 0 0 REV__nc|ENSG00000101557|P54578-2|USP14 REV__nc|ENSG00000101557|P54578-2|USP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.5422973632812 3 436.880228 1307.61885 NaN NaN NaN NaN NaN NaN NaN 24.231 1 24.231 23.731 24.731 0 0 0 0 0.99897 1 12375 12375 0.77653 0.32202 1 + 38250 18183 25605 26094 44843 44843 -0.022649830527370796 LVRMMQIWCE 10 Unmodified _LVRMMQIWCE_ 0 0 0 REV__nc|ENSG00000101557|P54578-2|USP14 REV__nc|ENSG00000101557|P54578-2|USP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8789978027344 3 436.880228 1307.61885 NaN NaN NaN NaN NaN NaN NaN 14.824 1 14.793 14.293 15.293 -0.030868 0 0 0 1.0048 1 7238 7238 0.13989 0 1 + 38251 18183 25605 26094 44844 44844 -0.022649830527370796 LVRMMQIWCE 10 Unmodified _LVRMMQIWCE_ 0 0 0 REV__nc|ENSG00000101557|P54578-2|USP14 REV__nc|ENSG00000101557|P54578-2|USP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8789978027344 3 436.880228 1307.61885 NaN NaN NaN NaN NaN NaN NaN 33.391 1 33.232 32.732 33.732 -0.15918 0 0 0 1.0047 1 17415 17415 0.15932 0 1 + 38252 18183 25605 26094 44845 44845 -0.022649830527370796 LVRNQLLAGV 10 Unmodified _LVRNQLLAGV_ 0 0 0 REV__ENSG00000118491|ENST00000237275|ZC2HC1B REV__ENSG00000118491|ENST00000237275|ZC2HC1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5612487792969 3 361.560869 1081.66078 -0.23344 -8.4402E-05 -0.22593 -8.1686E-05 -0.45936 -0.00016609 361.5608812661085 32.438 0.7854 32.468 31.887 32.672 0.029743 46 33 2 0 0 0 0.54684 2 17102 16820;17102 17.443 0.32975 1 1474100 + 38253 19151 25606 26095 44846;44847 44847 0.1232140001393418 LVRNQLLAGV 10 Unmodified _LVRNQLLAGV_ 0 0 0 REV__ENSG00000118491|ENST00000237275|ZC2HC1B REV__ENSG00000118491|ENST00000237275|ZC2HC1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5612182617188 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 30.528 1 30.559 30.059 31.059 0.030106 0 0 0 0.51756 1 15963 15963 21.59 0 1 + 38254 19151 25606 26095 44848 44848 0.1232140001393418 LVRNQLLAGV 10 Unmodified _LVRNQLLAGV_ 0 0 0 REV__ENSG00000118491|ENST00000237275|ZC2HC1B REV__ENSG00000118491|ENST00000237275|ZC2HC1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5610961914062 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 30.913 1 30.943 30.443 31.443 0.030106 0 0 0 0.7417 1 16177 16177 22.658 0 1 + 38255 19151 25606 26095 44849 44849 0.1232140001393418 LVRPPASSL 9 Unmodified _LVRPPASSL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1 nc|ENSG00000089127|P00973-2|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2861022949219 2 470.284734 938.554916 NaN NaN NaN NaN NaN NaN NaN 37.078 1 36.829 36.329 37.329 -0.2497 0 0 0 0.02218 1 19476 19476 75.761 27.415 1 38256 16067 25607 26096 44850 44850 0.08318064168463479 LVRPPASSL 9 Unmodified _LVRPPASSL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1 nc|ENSG00000089127|P00973-2|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2851257324219 2 470.284734 938.554916 1.2868 0.00060517 1.0256 0.00048235 2.3125 0.0010875 470.2853211139991 41.907 0.38806 37.3 37.112 37.5 -4.6079 42 24 2 0 0 0 0.0086209 2 25301 25154;25301 89.401 39.468 1 11222000 38257 16067 25607 26096 44851;44852 44852 0.08318064168463479 LVRPPGTMA 9 Unmodified _LVRPPGTMA_ 0 0 0 nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5 nc|ENSG00000099834|Q9HBB8-2|CDHR5 nc|ENSG00000099834|Q9HBB8-2|CDHR5 MSMS AL20221201_MKP_PDAC_01 4 471.2649536132812 2 471.265487 940.516422 NaN NaN NaN NaN NaN NaN NaN 36.598 1 32.314 31.814 32.814 -4.2835 0 0 0 0.13831 1 21386 21386 38.176 5.8701 1 38258 1713 25608 26097 44853 44853 0.04378435262299263 LVRPVWLLL 9 Unmodified _LVRPVWLLL_ 0 0 0 ENST00000579408.5_2_18:47018090-47018201:-|nuORF ENST00000579408.5_2_18:47018090-47018201:-|nuORF ENST00000579408.5_2_18:47018090-47018201:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 370.2452697753906 3 370.246222 1107.71684 NaN NaN NaN NaN NaN NaN NaN 95.561 1 89.385 88.885 89.885 -6.1757 0 0 0 0.75456 1 63299 63299 7.609 0 1 38259 15548 25609 26098 44854 44854 0.16728652921415232 LVRQDAGVL 9 Unmodified _LVRQDAGVL_ 0 0 0 ENST00000374694.2_1_10:35928201-35929404:-|nuORF ENST00000374694.2_1_10:35928201-35929404:-|nuORF ENST00000374694.2_1_10:35928201-35929404:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.784912109375 2 485.787641 969.56073 0.42237 0.00020518 -2.1282 -0.0010338 -1.7058 -0.00082866 485.78779771836963 45.294 0.67345 40.339 39.995 40.669 -4.9549 134 45 5 0 0 0 0.46577 1 27586 27586 9.3474 0 1 86016000 38260 12454 25610 26099 44855 44855 0.07473162680128098 LVRRFWLM 8 Unmodified _LVRRFWLM_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2204895019531 3 374.21979 1119.63754 1.489 0.00055721 0.43677 0.00016345 1.9258 0.00072066 374.2198514240248 42.493 1.0825 37.809 37.46 38.542 -4.6846 254 71 5 0 0 0 0.72953 1 25676 25676 10.824 10.824 1 2966099999.9999995 + 38261 17894 25611 26100 44856 44856 0.08250682695620526 LVRRMLML 8 Unmodified _LVRRMLML_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000486402.1_1_X:41519640-41524682:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.314453125 2 516.314457 1030.61436 NaN NaN NaN NaN NaN NaN NaN 92.631 1 92.661 92.161 93.161 0.030197 0 0 0 0.97444 1 51509 51509 2.8892 0 1 38262 5814 25612 26101 44857 44857 0.10027920586639993 LVSASVPSL 9 Unmodified _LVSASVPSL_ 0 0 0 REV__ENSG00000006634|ENST00000265728|DBF4 REV__ENSG00000006634|ENST00000265728|DBF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 872.5072631835938 1 872.50876 871.501483 -0.59396 -0.00051824 -1.3709 -0.0011961 -1.9649 -0.0017144 872.5085790520875 51.66 0.16866 51.226 51.156 51.325 -0.43367 11 8 2 0 0 0 0.016184 1 27875 27875 67.344 0 1 1891700 + 38263 16993 25613 26102 44858 44858 0.060592666659431416 LVSCGDRNF 9 Unmodified _LVSCGDRNF_ 0 0 0 REV__ENSG00000171984|ENST00000303142|SHLD1 REV__ENSG00000171984|ENST00000303142|SHLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7406616210938 2 505.739834 1009.46511 0.45741 0.00023133 0.36206 0.00018311 0.81947 0.00041444 505.7401288728209 70.039 0.42452 70.07 69.883 70.307 0.030914 81 21 6 0 0 0 0.39863 1 38593 38593 12.532 0.89125 1 33164000 + 38264 22617 25614 26103 44859 44859 -0.03923933502414911 LVSDEEAPL 9 Unmodified _LVSDEEAPL_ 0 0 0 REV__nc|ENSG00000047849|P27816-6|MAP4 REV__nc|ENSG00000047849|P27816-6|MAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7450561523438 2 486.747847 971.481142 1.4851 0.00072286 2.6683 0.0012988 4.1534 0.0020216 486.74886027727956 41.824 0.59994 37.216 36.936 37.536 -4.6079 106 37 4 0 0 0 0.10734 1 25288 25288 32.305 1.0371 1 28479000 + 38265 17235 25615 26104 44860 44860 -0.005739487845289659 LVSLNPSP 8 Unmodified _LVSLNPSP_ 0 0 0 REV__ENST00000503979.1_1_5:139942046-139942166:-|nuORF REV__ENST00000503979.1_1_5:139942046-139942166:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.4668579101562 1 826.466895 825.459619 0.49417 0.00040842 -0.36765 -0.00030385 0.12652 0.00010457 826.4664684523661 78.35 1.1249 72.175 71.754 72.879 -6.1757 203 66 4 0 0 0 0.15558 1 51414 51414 85.357 14.223 1 211680000 + 38266 28048 25616 26105 44861 44861 0.03990710977427625 LVSLWQNL 8 Unmodified _LVSLWQNL_ 0 0 0 REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7793273925781 2 486.779285 971.544017 0.86923 0.00042312 -0.94192 -0.00045851 -0.07269 -3.5384E-05 486.7785400516605 75.112 0.37029 74.634 74.474 74.844 -0.47713 41 16 3 0 0 0 0.57045 1 41072 41072 28.487 28.487 1 13522000 + 38267 27149 25617 26106 44862 44862 0.05710661794171301 LVSNGTDVNL 10 Unmodified _LVSNGTDVNL_ 0 0 0 ENST00000464130.5_1_10:127684008-127695721:+|nuORF;ENST00000492670.5_1_10:127677150-127697871:+|nuORF;nc|ENSG00000203780|Q8TC84-2|FANK1;ENSG00000203780|ENST00000368693|FANK1;nc|ENSG00000203780|Q8TC84-3|FANK1 ENST00000464130.5_1_10:127684008-127695721:+|nuORF ENST00000464130.5_1_10:127684008-127695721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.271484375 2 516.272021 1030.52949 0.42894 0.00022145 -0.4015 -0.00020728 0.02744 1.4166E-05 516.2717997626701 39.212 0.34498 39.212 39.036 39.381 0 42 16 3 0 0 0 0.48505 1 21073 21073 17.113 0 1 30843000 38268 10223 25618 26107 44863 44863 0.015445448553691676 LVSNILESY 9 Unmodified _LVSNILESY_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.280029296875 2 519.279315 1036.54408 0.33882 0.00017594 1.515 0.0007867 1.8538 0.00096264 519.2801898018847 68.494 0.50245 68.013 67.784 68.286 -0.48071 40 22 3 0 0 0 0.07916 1 37467 37467 37.974 21.825 1 4210700 38269 3667 25619 26108 44864 44864 0.027266170035318282 LVSNILESY 9 Unmodified _LVSNILESY_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 519.279315 1036.54408 0.96221 0.00049966 0.86176 0.0004475 1.824 0.00094715 519.2786708348543 73.869 0.30405 67.694 67.64 67.944 -6.1757 -0.15968 -0.00060109 NaN 37.974 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 12376000 38270 3667 25619 26108 0.027266170035318282 LVSPLLLL 8 Unmodified _LVSPLLLL_ 0 0 0 REV__nc|ENSG00000176510|Q8NH08|OR10AC1 REV__nc|ENSG00000176510|Q8NH08|OR10AC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.5935668945312 1 867.591367 866.584091 0.74141 0.00064324 1.2193 0.0010578 1.9607 0.0017011 867.5921901323252 102.2 0.11492 96.023 95.957 96.072 -6.1757 10 4 3 0 0 0 0.15234 1 68587 68587 86.121 0 1 7774300 + 38271 29804 25620 26109 44865 44865 0.14546208464753363 LVSPLLPP 8 Unmodified _LVSPLLPP_ 0 0 0 REV__nc|ENSG00000161847|Q8IY67|RAVER1 REV__nc|ENSG00000161847|Q8IY67|RAVER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2665100097656 2 418.268022 834.521491 NaN NaN NaN NaN NaN NaN NaN 39.149 1 39.161 38.661 39.661 0.011452 0 0 0 0.97444 1 20843 20843 2.5775 0 1 + 38272 21608 25621 26110 44866 44866 0.09761062396557918 LVSRHNFG 8 Unmodified _LVSRHNFG_ 0 0 0 REV__ENSG00000062370|ENST00000354340|ZNF112 REV__ENSG00000062370|ENST00000354340|ZNF112 MSMS AL20221201_MKP_PDAC_01 4 465.2509460449219 2 465.251226 928.487899 NaN NaN NaN NaN NaN NaN NaN 17.952 1 15.366 14.866 15.866 -2.5866 0 0 0 0.90745 1 9429 9429 18.146 7.0319 1 + 38273 17339 25622 26111 44867 44867 0.02079453677379206 LVSRRQQL 8 Unmodified _LVSRRQQL_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MSMS AL20221201_MKP_PDAC_01 4 500.307373046875 2 500.306532 998.598512 NaN NaN NaN NaN NaN NaN NaN 34.718 1 30.623 30.123 31.123 -4.0951 0 0 0 0.9192 1 20050 20050 16.942 0 1 + 38274 21362 25623 26112 44868 44868 0.09915673665602753 LVSRSTVS 8 Unmodified _LVSRSTVS_ 0 0 0 ENSG00000150628|ENST00000280191|SPATA4 ENSG00000150628|ENST00000280191|SPATA4 ENSG00000150628|ENST00000280191|SPATA4 MSMS AL20221201_MKP_PDAC_01 4 424.74365234375 2 424.745442 847.476331 NaN NaN NaN NaN NaN NaN NaN 37.807 1 33.438 32.938 33.938 -4.3689 0 0 0 0.94061 1 22225 22225 12.532 0 1 38275 6063 25624 26113 44869 44869 0.04649211863375058 LVSSQHAA 8 Unmodified _LVSSQHAA_ 0 0 0 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7178649902344 2 406.716685 811.418816 NaN NaN NaN NaN NaN NaN NaN 84.581 1 84.081 83.581 84.581 -0.49961 0 0 0 0.9489 1 46284 46284 10.824 2.9138 1 38276 9237 25625 26114 44870 44870 0.005563696578064992 LVSVGSAAP 9 Unmodified _LVSVGSAAP_ 0 0 0 ENST00000262746.5_1_1:45987470-45987503:-|nuORF ENST00000262746.5_1_1:45987470-45987503:-|nuORF ENST00000262746.5_1_1:45987470-45987503:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 802.419921875 1 800.451245 799.443968 1.2911 0.0010335 -0.40103 -0.00032101 0.89011 0.00071249 800.4508395211047 59.366 0.52443 53.252 52.99 53.515 -6.1147 72 28 3 0 0 0 0.2143 1 38003 38003 21.747 0 1 111280000 38277 11276 25626 26115 44871 44871 0.03622424460365892 LVTCFFTMLMP 11 Unmodified _LVTCFFTMLMP_ 0 0 0 REV__ENSG00000180083|ENST00000324384|WFDC11 REV__ENSG00000180083|ENST00000324384|WFDC11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.882568359375 3 434.881346 1301.62221 NaN NaN NaN NaN NaN NaN NaN 89.32 1 89.32 88.82 89.82 0 0 0 0 0.94165 1 49424 49424 0.45452 0 1 + 38278 23137 25627 26116 44872 44872 -0.016537329987613703 LVTDIQPVL 9 Unmodified _LVTDIQPVL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 997.5931396484375 1 997.592824 996.585547 -0.35169 -0.00035085 0.75734 0.00075552 0.40565 0.00040467 997.5938363319052 71.597 0.26673 71.597 71.405 71.672 0 17 11 2 0 0 0 0.095405 1 39833 39833 34.102 8.7031 1 644210 38279 1980 25628 26117 44873 44873 0.08711797762850892 LVTDIQPVL 9 Unmodified _LVTDIQPVL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.3005981445312 2 499.30005 996.585547 0.034779 1.7365E-05 0.61483 0.00030698 0.64961 0.00032435 499.3003935859278 71.559 0.25692 71.559 71.442 71.699 0 17 10 2 0 0 0 0.18465 1 39841 39841 24.674 12.142 1 727970 38280 1980 25628 26117 44874 44874 0.08711797762850892 LVTDIQPVL 9 Unmodified _LVTDIQPVL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 997.5975341796875 1 997.592824 996.585547 0.46059 0.00045948 0.73201 0.00073025 1.1926 0.0011897 997.5938192395256 72.014 0.29781 71.538 71.389 71.686 -0.47609 19 11 2 0 0 0 0.013323 1 39381 39381 71.134 18.865 1 1467600 38281 1980 25628 26117 44875 44875 0.08711797762850892 LVTDIQPVL 9 Unmodified _LVTDIQPVL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3014831542969 2 499.30005 996.585547 0.40842 0.00020392 0.58624 0.00029271 0.99466 0.00049663 499.30022666709453 72.034 0.27134 71.558 71.389 71.66 -0.47609 23 10 3 0 0 0 0.070838 1 39391 39391 39.957 5.5556 1 1949200 38282 1980 25628 26117 44876 44876 0.08711797762850892 LVTDIQPVL 9 Unmodified _LVTDIQPVL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2984313964844 2 499.30005 996.585547 1.1317 0.00056506 0.20708 0.00010339 1.3388 0.00066845 499.29972788368997 79.958 0.31203 73.782 73.677 73.989 -6.1757 31 18 2 0 0 0 0.022193 1 52412 52412 61.357 15.658 1 15422000 38283 1980 25628 26117 44877 44877 0.08711797762850892 LVTDLDTEY 9 Unmodified _LVTDLDTEY_ 0 0 0 ENST00000427455.1_2_7:35734046-35734534:-|nuORF;ENST00000603731.1_2_7:35734046-35735162:-|nuORF;ENST00000396081.5_1_7:35734046-35734373:-|nuORF;ENST00000311350.7_1_7:35734046-35734675:-|nuORF ENST00000427455.1_2_7:35734046-35734534:-|nuORF ENST00000427455.1_2_7:35734046-35734534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1068.412475585938 1 1068.50955 1067.50227 0.87822 0.00093838 -0.32594 -0.00034827 0.55228 0.00059011 1068.509227783849 60.568 0.34766 54.42 54.204 54.552 -6.1478 32 18 2 0 0 0 0.0067112 1 38848 38848 112.59 55.122 1 31127000 38284 11688 25629 26118 44878 44878 -0.02877983475673318 LVTDLDTEY 9 Unmodified _LVTDLDTEY_ 0 0 0 ENST00000427455.1_2_7:35734046-35734534:-|nuORF;ENST00000603731.1_2_7:35734046-35735162:-|nuORF;ENST00000396081.5_1_7:35734046-35734373:-|nuORF;ENST00000311350.7_1_7:35734046-35734675:-|nuORF ENST00000427455.1_2_7:35734046-35734534:-|nuORF ENST00000427455.1_2_7:35734046-35734534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7593383789062 2 534.758412 1067.50227 0.98363 0.00052601 0.29568 0.00015812 1.2793 0.00068413 534.7579300399137 60.534 0.39118 54.386 54.161 54.552 -6.1478 39 20 3 0 0 0 0.30562 1 38904 38904 16.942 5.302 1 41973000 38285 11688 25629 26118 44879 44879 -0.02877983475673318 LVTEIVGGP 9 Unmodified _LVTEIVGGP_ 0 0 0 nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.5090942382812 1 884.50876 883.501483 -0.59013 -0.00052198 -0.17265 -0.00015271 -0.76278 -0.00067469 884.5085922188342 76.466 0.44276 75.987 75.812 76.255 -0.47945 52 27 2 0 0 0 0.0058506 1 41809 41809 114.94 10.145 1 9765100 38286 16458 25630 26119 44880 44880 0.05507266665949828 LVTEIVGGP 9 Unmodified _LVTEIVGGP_ 0 0 0 nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.5092163085938 1 884.50876 883.501483 -0.3336 -0.00029507 0.38234 0.00033818 0.048739 4.311E-05 884.509149938861 84.82 0.69125 78.644 78.3 78.992 -6.1757 75 40 2 0 0 0 0.0036753 1 55875 55875 123.1 2.6458 1 38204000 38287 16458 25630 26119 44881 44881 0.05507266665949828 LVTELTIME 9 Unmodified _LVTELTIME_ 0 0 0 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7801513671875 2 524.783376 1047.5522 -0.059588 -3.1271E-05 -3.3124 -0.0017383 -3.3719 -0.0017695 524.7812956557482 76.503 0.38077 76.024 75.835 76.216 -0.47945 44 24 3 0 0 0 0.12841 1 41932 41932 30.225 1.738 1 6413800 + 38288 18473 25631 26120 44882 44882 0.030324279286332967 LVTEPSGP 8 Unmodified _LVTEPSGP_ 0 0 0 ENST00000355300.6_1_15:77908241-77924773:-|nuORF ENST00000355300.6_1_15:77908241-77924773:-|nuORF ENST00000355300.6_1_15:77908241-77924773:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 800.4247436523438 1 799.41961 798.412334 1.0423 0.00083327 0.093963 7.5116E-05 1.1363 0.00090838 799.4196143799851 77.962 0.58847 71.787 71.537 72.126 -6.1757 53 33 2 0 0 0 0.67481 1 51138 51138 19.439 3.6708 1 17026000 38289 12073 25632 26121 44883 44883 0.005064317064352508 LVTEVIPN 8 Unmodified _LVTEVIPN_ 0 0 0 ENSG00000163312|ENST00000295488|HELQ ENSG00000163312|ENST00000295488|HELQ ENSG00000163312|ENST00000295488|HELQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 884.5069580078125 1 884.50876 883.501483 0.086364 7.639E-05 -0.42726 -0.00037792 -0.3409 -0.00030153 884.5084794414523 76.007 0.36253 76.007 75.812 76.174 0 29 16 2 0 0 0 0.17035 1 42307 42307 81.864 0 1 4230100 38290 6975 25633 26122 44884 44884 0.05507266665949828 LVTGRCAT 8 Unmodified _LVTGRCAT_ 0 0 0 ENSG00000164197|ENST00000389100|RNF180;nc|ENSG00000164197|Q86T96-2|RNF180 ENSG00000164197|ENST00000389100|RNF180;nc|ENSG00000164197|Q86T96-2|RNF180 nc|ENSG00000164197|Q86T96-2|RNF180 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.7192993164062 2 410.720913 819.427273 NaN NaN NaN NaN NaN NaN NaN 39.095 1 39.095 38.595 39.595 0 0 0 0 0.90769 1 20929 20929 18.135 0 1 38291 7162;16334 25634 26123 44885 44885 0.010336003027759944 LVTLGNIF 8 Unmodified _LVTLGNIF_ 0 0 0 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7636413574219 2 438.763104 875.511654 0.15508 6.8044E-05 -0.22081 -9.6885E-05 -0.065733 -2.8841E-05 438.76316168917265 60.017 0.27797 59.526 59.352 59.63 -0.49079 28 13 3 0 0 0 0.40035 1 32623 32623 44.407 0 1 4655100 38292 10294 25635 26124 44886 44886 0.06891874391180863 LVTLHLIV 8 Unmodified _LVTLHLIV_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.3029479980469 2 454.302396 906.590239 0.95401 0.00043341 0.17413 7.9109E-05 1.1281 0.00051252 454.30235757525355 64.961 0.39125 58.786 58.591 58.982 -6.1757 35 21 2 0 0 0 0.50586 1 42098 42098 34.187 6.0141 1 8794000 + 38293 21159 25636 26125 44887 44887 0.13320726696292695 LVTLTHARR 9 Unmodified _LVTLTHARR_ 0 0 0 REV__ENST00000525059.1_1_11:451482-460289:+|nuORF REV__ENST00000525059.1_1_11:451482-460289:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.7939453125 2 533.827632 1065.64071 0.31593 0.00016865 -0.35005 -0.00018686 -0.034111 -1.8209E-05 533.8275448425442 38.571 0.29284 34.203 34.012 34.305 -4.3689 34 18 2 0 0 0 0.20358 1 22686 22686 3.2813 1.6287 1 18730000 + 38294 28343 25637 26126 44888 44888 0.11051649073965564 LVTQAIFVL 9 Unmodified _LVTQAIFVL_ 0 0 0 REV__ENSG00000006638|ENST00000375190|TBXA2R REV__ENSG00000006638|ENST00000375190|TBXA2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3131713867188 2 502.312961 1002.61137 0.40324 0.00020255 0.32523 0.00016337 0.72847 0.00036592 502.3131083247007 63.196 0.61186 63.174 62.888 63.5 -0.021614 82 30 3 0 0 0 0.039985 1 34587 34587 49.933 2.3386 1 21824000 + 38295 16994 25638 26127 44889 44889 0.11016692005136974 LVTQRVMDQR 10 Unmodified _LVTQRVMDQR_ 0 0 0 nc|ENSG00000162779|Q5T1B0-2|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF;ENSG00000162779|ENST00000367618|AXDND1 nc|ENSG00000162779|Q5T1B0-2|AXDND1 nc|ENSG00000162779|Q5T1B0-2|AXDND1 MSMS AL20221201_MKP_PDAC_01 4 623.33935546875 2 623.340246 1244.66594 NaN NaN NaN NaN NaN NaN NaN 84.639 1 78.463 77.963 78.963 -6.1757 0 0 0 0.61917 1 55698 55698 20.454 6.5476 1 38296 6913 25639 26128 44890 44890 0.053393358142329816 LVTSINHAL 9 Unmodified _LVTSINHAL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.281982421875 2 484.282192 966.549831 0.24811 0.00012015 -0.28151 -0.00013633 -0.033405 -1.6178E-05 484.28202228784534 42.892 0.19794 42.582 42.458 42.656 -0.31039 14 8 2 0 0 0 0.05447 1 22819 22819 43.858 7.7313 1 5092900 38297 9250 25640 26129 44891 44891 0.06521760305861335 LVTSINHAL 9 Unmodified _LVTSINHAL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2823181152344 2 484.282192 966.549831 0.70523 0.00034153 -0.15002 -7.2653E-05 0.55521 0.00026888 484.2820729861736 48.185 0.4302 42.951 42.728 43.158 -5.2339 39 25 2 0 0 0 0.032796 1 29969 29969 53.833 8.1332 1 16746000 38298 9250 25640 26129 44892 44892 0.06521760305861335 LVTSMRQQT 9 Unmodified _LVTSMRQQT_ 0 0 0 REV__nc|ENSG00000135426|A2RU30-2|TESPA1 REV__nc|ENSG00000135426|A2RU30-2|TESPA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2535400390625 2 532.281866 1062.54918 0.32742 0.00017428 -1.253 -0.00066694 -0.92557 -0.00049266 532.7851347975467 78.067 0.16762 78.067 78.004 78.172 0 8 6 2 0 0 0 0.20727 1 43375 43375 7.9102 1.5561 1 231280 + 38299 20065 25641 26130 44893 44893 0.02040597594486826 LVTSTGKL 8 Unmodified _LVTSTGKL_ 0 0 0 REV__ENST00000360652.6_2_20:2819033-2819093:-|nuORF REV__ENST00000360652.6_2_20:2819033-2819093:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.7537231445312 2 409.752736 817.490919 1.37 0.00056137 1.0232 0.00041926 2.3932 0.00098062 409.7530327886891 37.514 0.4929 33.231 32.974 33.467 -4.2835 67 29 3 0 0 0 0.79783 1 22033 22033 7.9102 0 1 29048000 + 38300 25913 25642 26131 44894 44894 0.07487284011529027 LVVCYTNHAL 10 Unmodified _LVVCYTNHAL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 378.1988525390625 3 378.198831 1131.57467 NaN NaN NaN NaN NaN NaN NaN 22.696 1 19.918 19.418 20.418 -2.7784 0 0 0 0.8671 1 12223 12223 8.4443 0 1 38301 3760 25643 26132 44895 44895 0.014140721169042081 LVVDSHVQY 9 Unmodified _LVVDSHVQY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.277587890625 2 530.277106 1058.53966 0.59575 0.00031591 -0.55381 -0.00029367 0.041944 2.2242E-05 530.2769348553512 39.088 0.27338 39.088 38.929 39.202 0 20 12 2 0 0 0 0.044011 1 20911 20911 47.749 7.799 1 4012300 38302 8403 25644 26133 44896 44896 0.012731525806202626 LVVDSHVQY 9 Unmodified _LVVDSHVQY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2782592773438 2 530.277106 1058.53966 0.48871 0.00025915 -1.323 -0.00070157 -0.8343 -0.00044241 530.2774978930659 45.039 0.30553 40.187 40.036 40.342 -4.852 33 19 2 0 0 0 0.0082353 1 27555 27555 96.111 48.362 1 20059000 38303 8403 25644 26133 44897 44897 0.012731525806202626 LVVFLLLVQR 10 Unmodified _LVVFLLLVQR_ 0 0 0 REV__PCDHB3|p.F20V|1|0.22|ENSG00000113205|chr5:141100707-141100707|T/G|missense_variant REV__PCDHB3|p.F20V|1|0.22|ENSG00000113205|chr5:141100707-141100707|T/G|missense_variant MSMS AL20221201_MKP_PDAC_01 4 600.396240234375 2 600.397359 1198.78016 NaN NaN NaN NaN NaN NaN NaN 105.97 1 99.796 99.296 100.3 -6.1757 0 0 0 1.0019 1 70964 70964 0.45834 0 1 + 38304 30068 25645 26134 44898 44898 0.18872593638639046 LVVILDANQI 10 Unmodified _LVVILDANQI_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 MSMS AL20221201_MKP_PDAC_01 4 549.3309936523438 2 549.331882 1096.64921 NaN NaN NaN NaN NaN NaN NaN 26.58 1 23.629 23.129 24.129 -2.9511 0 0 0 0.89532 1 14662 14662 8.1555 0 1 + 38305 16953 25646 26135 44899 44899 0.1047515819993805 LVVLLPAE 8 Unmodified _LVVLLPAE_ 0 0 0 ENST00000496771.5_1_X:99890559-99890655:-|nuORF ENST00000496771.5_1_X:99890559-99890655:-|nuORF ENST00000496771.5_1_X:99890559-99890655:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 427.7422790527344 2 427.273304 852.532055 0.58364 0.00024938 -1.5241 -0.0006512 -0.94044 -0.00040183 427.27210391468657 99.702 0.10995 93.526 93.448 93.558 -6.1757 9 6 2 0 0 0 8.7369 1 66432 66432 18.135 4.6271 1 10205000 38306 14385 25647 26136 44900 44900 0.09989045050986078 LVVRLVRSNEP 11 Unmodified _LVVRLVRSNEP_ 0 0 0 REV__ENSG00000132591|ENST00000254928|ERAL1 REV__ENSG00000132591|ENST00000254928|ERAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2615966796875 3 427.9261 1280.75647 2.2528 0.00096405 -1.5696 -0.00067168 0.68321 0.00029236 427.92513207279353 95.591 0.67726 95.596 95.379 96.057 0.004158 60 25 3 0 0 0 0.74096 2 53080 53080;53187 0.40827 0.24894 1 3885400 + 38307 19864 25648 26137 44901;44902 44901 0.12732128134189225 LVVVHIAA 8 Unmodified _LVVVHIAA_ 0 0 0 REV__ENSG00000103047|ENST00000261778|TANGO6 REV__ENSG00000103047|ENST00000261778|TANGO6 MSMS AL20221201_MKP_PDAC_01 4 411.2645874023438 2 411.265813 820.517074 NaN NaN NaN NaN NaN NaN NaN 104.39 1 98.21 97.71 98.71 -6.1757 0 0 0 0.97444 1 69912 69912 2.8892 0 1 + 38308 18280 25649 26138 44903 44903 0.09963597973637661 LVWEQQSCHRQ 11 Unmodified _LVWEQQSCHRQ_ 0 0 0 REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.3345947265625 2 707.338235 1412.66192 -0.60808 -0.00043012 -2.8412 -0.0020097 -3.4493 -0.0024398 707.3367397117752 41.074 0.20716 41.074 40.989 41.196 0 25 10 3 0 0 0 0.50515 1 22127 22127 16.149 0 1 8009400 + 38309 26980 25650 26139 44904 44904 -0.027907536794828047 LVWEQQSCHRQ 11 Unmodified _LVWEQQSCHRQ_ 0 0 0 REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF REV__ENST00000431558.1_1_3:9989113-9989800:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 707.338235 1412.66192 -0.60808 -0.00043012 -2.8412 -0.0020097 -3.4493 -0.0024398 707.3367397117752 41.074 0.20716 41.074 40.989 41.196 0 -0.045853 0.0004066 NaN 16.149 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 8009400 + 38310 26980 25650 26139 -0.027907536794828047 LVWLFCPVL 9 Unmodified _LVWLFCPVL_ 0 0 0 REV__ENST00000526683.5_1_8:144898636-144898693:-|nuORF REV__ENST00000526683.5_1_8:144898636-144898693:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8772583007812 3 363.87703 1088.60926 0.20077 7.3056E-05 -0.15601 -5.6768E-05 0.044763 1.6288E-05 363.8769505671744 39.332 0.52798 39.343 38.981 39.509 0.011456 34 13 3 0 0 0 0.52844 1 20921 20921 5.7319 0.83484 1 6517300 + 38311 28376 25651 26140 44905 44905 0.06849939995686327 LVWRGETAGF 10 Unmodified _LVWRGETAGF_ 0 0 0 ENST00000409212.5_1_2:235887401-235943560:+|nuORF ENST00000409212.5_1_2:235887401-235943560:+|nuORF ENST00000409212.5_1_2:235887401-235943560:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2987670898438 2 568.298373 1134.58219 NaN NaN NaN NaN NaN NaN NaN 69.403 1 69.434 68.934 69.934 0.030914 0 0 0 0.90096 1 38148 38148 7.9102 0.62092 1 38312 12957 25652 26141 44906 44906 0.020285477088464177 LVYCKRKS 8 Unmodified _LVYCKRKS_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7837524414062 2 498.786587 995.558621 -0.12944 -6.4565E-05 -3.0766 -0.0015346 -3.2061 -0.0015992 498.7847601485872 51.655 0.20927 51.222 51.115 51.325 -0.43367 12 10 2 0 0 0 0.72664 1 27869 27869 14.838 4.7643 1 3215700 38313 3746 25653 26142 44907 44907 0.06066410670678124 LVYGHHGD 8 Unmodified _LVYGHHGD_ 0 0 0 ENST00000484012.5_1_1:29555565-29557433:-|nuORF;ENST00000493928.1_1_1:29549741-29557433:-|nuORF;ENST00000475861.6_1_1:29543281-29557400:-|nuORF;ENST00000490529.5_1_1:29528540-29557400:-|nuORF;ENSG00000116353|ENST00000263702|MECR ENST00000484012.5_1_1:29555565-29557433:-|nuORF ENST00000484012.5_1_1:29555565-29557433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2127075195312 2 449.214309 896.414065 -0.17892 -8.0376E-05 0.13952 6.2673E-05 -0.039407 -1.7702E-05 449.21421267233364 19.249 0.12833 19.249 19.185 19.313 0 12 7 2 0 0 0 0.80975 1 9636 9636 0.79363 0 1 369920 38314 3216 25654 26143 44908 44908 -0.03828514484951029 LVYKYNRL 8 Unmodified _LVYKYNRL_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.87841796875 3 356.878198 1067.61277 1.1881 0.00042402 0.80954 0.00028891 1.9977 0.00071293 356.87827326512354 46.3 0.43748 41.248 40.995 41.432 -5.0517 70 30 3 0 0 0 0.79982 1 28456 28456 6.7232 0 1 43613000 38315 1017 25655 26144 44909 44909 0.08166326093896714 LVYLGVYFY 9 Unmodified _LVYLGVYFY_ 0 0 0 REV__ENSG00000134198|ENST00000369516|TSPAN2 REV__ENSG00000134198|ENST00000369516|TSPAN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8037719726562 2 568.804968 1135.59538 NaN NaN NaN NaN NaN NaN NaN 37.127 1 36.878 36.378 37.378 -0.2497 0 0 0 0.70111 1 19502 19502 9.3474 1.4373 1 + 38316 19957 25656 26145 44910 44910 0.03300985768237297 LVYNGVYQY 9 Unmodified _LVYNGVYQY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7801513671875 2 559.779482 1117.54441 0.65125 0.00036456 0.48324 0.00027051 1.1345 0.00063507 559.7799935564437 53.563 0.41929 53.112 52.963 53.383 -0.45173 42 20 4 0 0 0 0.078417 1 28963 28963 38.151 26.511 1 10428000 38317 9480;3862 25657 26146 44911 44911 -0.009659632766215509 LVYNGVYQY 9 Unmodified _LVYNGVYQY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7824096679688 2 559.779482 1117.54441 0.47956 0.00026845 2.7404 0.001534 3.22 0.0018025 559.7812290488337 53.204 0.17558 53.141 53.044 53.219 -0.063423 13 8 2 0 0 0 0.12841 1 28852 28852 30.225 13.283 1 1324000 38318 9480;3862 25657 26146 44912 44912 -0.009659632766215509 LVYNGVYQY 9 Unmodified _LVYNGVYQY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2 ENSG00000186480|ENST00000340368|INSIG1;ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7811279296875 2 559.779482 1117.54441 1.3309 0.00074502 0.74496 0.00041701 2.0759 0.001162 559.7797260297663 60.799 0.40318 54.652 54.462 54.865 -6.1478 45 21 3 0 0 0 0.045537 2 39080 39080;39202 46.921 29.979 1 67624000 38319 9480;3862 25657 26146 44913;44914 44913 -0.009659632766215509 LVYSIDDWPH 10 Unmodified _LVYSIDDWPH_ 0 0 0 REV__nc|ENSG00000131473|P53396-3|ACLY REV__nc|ENSG00000131473|P53396-3|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5368041992188 3 415.536389 1243.58734 0.44326 0.00018419 0.34741 0.00014436 0.79067 0.00032855 415.5365370097811 36.679 0.27053 36.679 36.547 36.818 0 22 12 2 0 0 0 0.66569 1 19476 19476 3.5871 0 1 6625100 + 38320 19794 25658 26147 44915 44915 -0.024711932192076347 LVYTVKINP 9 Unmodified _LVYTVKINP_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1;ENST00000532980.3_1_11:59055317-59056556:-|nuORF ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.816650390625 2 523.815867 1045.61718 3.7896 0.001985 -2.8996 -0.0015189 0.88995 0.00046617 523.8149076289508 98.442 0.33981 98.414 98.244 98.584 -0.028282 28 12 4 0 0 0 0.14602 1 54702 54702 28.487 3.813 1 1057200 38321 9983 25659 26148 44916 44916 0.0961979051680828 LVYVPSASLF 10 Unmodified _LVYVPSASLF_ 0 0 0 ENSG00000165891|ENST00000322886|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;nc|ENSG00000165891|Q96AV8-2|E2F7 ENSG00000165891|ENST00000322886|E2F7 ENSG00000165891|ENST00000322886|E2F7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3106079101562 2 548.307875 1094.6012 1.0713 0.00058743 0.69172 0.00037928 1.7631 0.00096671 548.3085683935938 79.867 1.1036 73.691 73.132 74.236 -6.1757 114 66 2 0 0 0 0.19662 1 52613 52613 34.102 4.2619 1 35742000 38322 7400 25660 26149 44917 44917 0.05768084279884533 LWAGSQDPPFL 11 Unmodified _LWAGSQDPPFL_ 0 0 0 ENST00000594728.1_1_11:62432848-62433109:+|nuORF ENST00000594728.1_1_11:62432848-62433109:+|nuORF ENST00000594728.1_1_11:62432848-62433109:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3139038085938 2 615.811313 1229.60807 0.77853 0.00047943 -0.3049 -0.00018776 0.47363 0.00029167 616.3120263014858 72.713 0.34378 72.238 72.063 72.407 -0.47588 53 15 5 0 0 0 0.28407 1 39745 39745 27.629 0.74515 1 33022000 38323 15752 25661 26150 44918 44918 0.002453971604609251 LWAGSQDPPFL 11 Unmodified _LWAGSQDPPFL_ 0 0 0 ENST00000594728.1_1_11:62432848-62433109:+|nuORF ENST00000594728.1_1_11:62432848-62433109:+|nuORF ENST00000594728.1_1_11:62432848-62433109:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 615.811313 1229.60807 0.4302 0.00026492 2.4794 0.0015269 2.9096 0.0017918 615.8131887342554 72.369 0.20267 72.369 72.258 72.461 0 0.065625 0.00080439 NaN 27.629 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 449820 38324 15752 25661 26150 0.002453971604609251 LWALLVYNA 9 Unmodified _LWALLVYNA_ 0 0 0 nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6 nc|ENSG00000112414|Q86SQ4-2|ADGRG6 nc|ENSG00000112414|Q86SQ4-2|ADGRG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.8001708984375 2 531.80276 1061.59097 -0.032003 -1.7019E-05 -1.4125 -0.00075118 -1.4445 -0.0007682 531.8021785162989 48.899 0.18305 48.899 48.786 48.969 0 12 8 2 0 0 0 0.37804 1 26874 26874 13.508 2.0132 1 2336700 38325 2893 25662 26151 44919 44919 0.06263521345317713 LWALPHFL 8 Unmodified _LWALPHFL_ 0 0 0 ENST00000370803.7_1_X:133507308-133511628:+|nuORF ENST00000370803.7_1_X:133507308-133511628:+|nuORF ENST00000370803.7_1_X:133507308-133511628:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7868041992188 2 498.786913 995.559273 NaN NaN NaN NaN NaN NaN NaN 83.028 1 83.028 82.528 83.528 0 0 0 0 0.97444 1 46051 46051 2.8892 0.31174 1 38326 12344 25663 26152 44920 44920 0.06131573382037914 LWALPHFL 8 Unmodified _LWALPHFL_ 0 0 0 ENST00000370803.7_1_X:133507308-133511628:+|nuORF ENST00000370803.7_1_X:133507308-133511628:+|nuORF ENST00000370803.7_1_X:133507308-133511628:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7867431640625 2 498.786913 995.559273 0.39478 0.00019691 -1.424 -0.00071028 -1.0292 -0.00051337 498.7860493488721 83.403 0.38576 82.905 82.764 83.15 -0.49751 34 15 3 0 0 0 0.80624 1 45638 45638 2.8892 0.31174 1 800810 38327 12344 25663 26152 44921 44921 0.06131573382037914 LWAVLYGH 8 Unmodified _LWAVLYGH_ 0 0 0 REV__nc|ENSG00000132259|Q8IV77-2|CNGA4 REV__nc|ENSG00000132259|Q8IV77-2|CNGA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2775573730469 2 479.760895 957.507237 0.91079 0.00043696 -2.0662 -0.00099131 -1.1555 -0.00055434 479.7596024517953 71.393 0.29761 71.432 71.323 71.62 0.039024 17 13 2 0 0 0 8.7369 1 39399 39399 0.79363 0.10326 1 606610 + 38328 19836 25664 26153 44922 44922 0.026784099682686247 LWAWILLLS 9 Unmodified _LWAWILLLS_ 0 0 0 ENSG00000022355|ENST00000393943|GABRA1 ENSG00000022355|ENST00000393943|GABRA1 ENSG00000022355|ENST00000393943|GABRA1 MSMS AL20221201_MKP_PDAC_01 4 557.839599609375 2 557.836603 1113.65865 NaN NaN NaN NaN NaN NaN NaN 17.289 1 14.702 14.202 15.202 -2.5866 0 0 0 0.84564 1 9027 9027 2.0598 0.21551 1 38329 533 25665 26154 44923 44923 0.10636971276153417 LWCEAYTSFL 10 Unmodified _LWCEAYTSFL_ 0 0 0 ENST00000481343.1_1_3:183525829-183527073:+|nuORF ENST00000481343.1_1_3:183525829-183527073:+|nuORF ENST00000481343.1_1_3:183525829-183527073:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.7852783203125 2 616.78645 1231.55835 0.63638 0.00039251 -0.77846 -0.00048014 -0.14208 -8.7635E-05 616.7860045342261 83.892 0.35473 83.392 83.195 83.55 -0.49962 39 14 4 0 0 0 0.50944 1 45972 45972 15.847 5.0233 1 3552700 38330 14081 25666 26155 44924 44924 -0.04817053839838081 LWCLSFLVLL 10 Unmodified _LWCLSFLVLL_ 0 0 0 REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|17|1|anti-sense REV__MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|17|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9038696289062 3 402.903356 1205.68824 0.85512 0.00034453 0.076909 3.0987E-05 0.93203 0.00037552 402.9034869491713 22.219 0.36796 19.484 19.307 19.675 -2.7348 45 19 3 0 0 0 0.67046 1 11890 11890 6.1918 0 1 7293800 + 38331 29469 25667 26156 44925 44925 0.09362167229960505 LWDLLLSEY 9 Unmodified _LWDLLLSEY_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5368347167969 3 384.537619 1150.59103 NaN NaN NaN NaN NaN NaN NaN 15.187 1 15.173 14.673 15.673 -0.014067 0 0 0 0.84369 1 7440 7440 1.1933 0 1 38332 10835 25668 26157 44926 44926 0.021754765546575072 LWDSAVSHF 9 Unmodified _LWDSAVSHF_ 0 0 0 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2569580078125 2 531.256174 1060.49779 0.82388 0.00043769 -2.3427 -0.0012446 -1.5188 -0.00080689 531.2549117305026 63.327 0.33518 57.151 57.019 57.355 -6.1757 41 19 3 0 0 0 0.026094 1 41027 41027 57.471 36.6 1 14711000 38333 10525 25669 26158 44927 44927 -0.030034031079139822 LWDTAGQERF 10 Unmodified _LWDTAGQERF_ 0 0 0 ENSG00000069974|ENST00000336787|RAB27A;nc|ENSG00000175582|P20340-4|RAB6A;nc|ENSG00000154917|Q9NRW1-2|RAB6B;nc|ENSG00000175582|P20340-2|RAB6A;ENSG00000175582|ENST00000336083|RAB6A;ENSG00000154917|ENST00000285208|RAB6B;nc|ENSG00000069974|P51159-2|RAB27A;nc|ENSG00000147127|Q5JT25-2|RAB41;ENSG00000147127|ENST00000374473|RAB41;ENSG00000172007|ENST00000305626|RAB33B;nc|ENSG00000109113|Q9BZG1-4|RAB34;nc|ENSG00000109113|Q9BZG1-2|RAB34;ENSG00000109113|ENST00000395245|RAB34;ENSG00000165105|ENST00000376447|RASEF;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000179331|ENST00000320578|RAB39A ENSG00000069974|ENST00000336787|RAB27A;ENSG00000172007|ENST00000305626|RAB33B;nc|ENSG00000109113|Q9BZG1-4|RAB34;ENSG00000165105|ENST00000376447|RASEF;ENSG00000041353|ENST00000262094|RAB27B;ENSG00000179331|ENST00000320578|RAB39A nc|ENSG00000109113|Q9BZG1-4|RAB34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.7962036132812 2 611.796195 1221.57784 0.604 0.00036953 0.68387 0.00041839 1.2879 0.00078791 611.7961975984492 51.58 0.26719 45.931 45.804 46.071 -5.649 29 16 2 0 0 0 0.011612 1 32432 32432 107.1 0 1 52578000 38334 8172;2633;1012;7292;653;8828 25670 26159 44928 44928 -0.024089615047159896 LWDVIIAEL 9 Unmodified _LWDVIIAEL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3092041015625 2 536.307875 1070.6012 0.6828 0.00036619 0.91069 0.00048841 1.5935 0.0008546 536.3082511756751 101.6 0.10976 95.426 95.373 95.483 -6.1757 12 5 3 0 0 0 0.095405 1 68198 68198 34.102 15.967 1 18123000 38335 1582 25671 26160 44929 44929 0.06872084279916635 LWEDFVADTF 10 Unmodified _LWEDFVADTF_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.8604736328125 3 414.860761 1241.56045 -0.4527 -0.00018781 -1.6231 -0.00067336 -2.0758 -0.00086117 414.8602475978164 19.737 0.11522 19.766 19.702 19.817 0.028357 12 7 2 0 0 0 0.71276 1 9979 9979 0.62683 0.12087 1 622970 + 38336 18554 25672 26161 44930 44930 -0.05066301830379416 LWEECKPCLK 10 Unmodified _LWEECKPCLK_ 0 0 0 CON__P17697;nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU CON__P17697;nc|ENSG00000120885|P10909-4|CLU CON__P17697 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.8081665039062 2 624.809402 1247.60425 NaN NaN NaN NaN NaN NaN NaN 33.483 1 33.324 32.824 33.824 -0.15918 0 0 0 0.37462 1 17466 17466 32.786 12.371 1 + 38337 172;3549 25673 26162 44931 44931 -0.009647319292525935 LWEEKPVCL 9 Carbamidomethyl (C) _LWEEKPVC(Carbamidomethyl (C))L_ LWEEKPVC(1)L LWEEKPVC(61)L 0 1 0 ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.3025512695312 2 587.302267 1172.58998 0.37114 0.00021797 -0.92993 -0.00054615 -0.55879 -0.00032818 587.3022334014337 55.438 0.22857 54.96 54.82 55.048 -0.47798 22 10 3 0 0 0 0.022193 1 30044 30044 61.357 33.729 1 2563500 38338 14182 25674 26163 44932 44932 985 0.0105893891411597 LWEEKPVCL 9 Carbamidomethyl (C) _LWEEKPVC(Carbamidomethyl (C))L_ LWEEKPVC(1)L LWEEKPVC(100)L 0 1 0 ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF ENST00000486354.1_1_10:5488601-5488679:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3026733398438 2 587.302267 1172.58998 1.0282 0.00060389 -0.85133 -0.00049999 0.17691 0.0001039 587.3019386622889 61.463 0.52849 55.315 55.076 55.604 -6.1478 85 26 4 0 0 0 0.0087923 2 39480 39480;39616 103.42 53.486 1 195800000 38339 14182 25674 26163 44933;44934 44933 985 0.0105893891411597 LWEGTQAPI 9 Unmodified _LWEGTQAPI_ 0 0 0 ENST00000557600.5_1_14:94547684-94567230:+|nuORF ENST00000557600.5_1_14:94547684-94567230:+|nuORF ENST00000557600.5_1_14:94547684-94567230:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3039855957031 2 507.766374 1013.5182 3.8187 0.001939 1.0436 0.0005299 4.8623 0.0024689 507.7667269054601 98.184 0.23656 98.166 98.072 98.309 -0.018188 14 8 2 0 0 0 0.21564 1 54604 54604 3.9444 1.0552 1 336730 38340 15261 25675 26164 44935 44935 0.01197767551900597 LWEIIFHI 8 Unmodified _LWEIIFHI_ 0 0 0 REV__ENST00000332624.7_1_2:202285280-202285352:-|nuORF REV__ENST00000332624.7_1_2:202285280-202285352:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.538818359375 3 357.539294 1069.59605 NaN NaN NaN NaN NaN NaN NaN 45.571 1 45.543 45.043 46.043 -0.028011 0 0 0 0.97444 1 24487 24487 1.8442 0 1 + 38341 25615 25676 26165 44936 44936 0.06403825207939917 LWEIIFHI 8 Unmodified _LWEIIFHI_ 0 0 0 REV__ENST00000332624.7_1_2:202285280-202285352:-|nuORF REV__ENST00000332624.7_1_2:202285280-202285352:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5383911132812 3 357.539294 1069.59605 NaN NaN NaN NaN NaN NaN NaN 50.609 1 50.555 50.055 51.055 -0.053871 0 0 0 0.97444 1 27369 27369 1.8442 0 1 + 38342 25615 25676 26165 44937 44937 0.06403825207939917 LWELLMHVTD 10 Unmodified _LWELLMHVTD_ 0 0 0 REV__nc|ENSG00000127603|Q9UPN3|MACF1 REV__nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5489501953125 3 419.549641 1255.62709 -0.55733 -0.00023383 1.1168 0.00046857 0.5595 0.00023474 419.55002196959003 16.941 0.081148 16.942 16.886 16.967 0.0010548 37 26 2 0 0 0 0.71042 1 8378 8378 1.7423 0.78 1 886130 + 38343 19587 25677 26166 44938 44938 0.009506104598813181 LWELQDMVWDS 11 Unmodified _LWELQDMVWDS_ 0 0 0 ENST00000591360.1_1_18:56203896-56204202:+|nuORF ENST00000591360.1_1_18:56203896-56204202:+|nuORF ENST00000591360.1_1_18:56203896-56204202:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.5538330078125 3 474.551711 1420.6333 0.98868 0.00046918 1.5054 0.00071437 2.494 0.0011835 474.5531206864824 60.367 0.28583 54.252 54.116 54.402 -6.1147 22 14 3 0 0 0 0.68427 1 38870 38870 2.6312 0 1 19139000 38344 15702 25678 26167 44939 44939 -0.060189160992649704 LWEPTPVKL 9 Unmodified _LWEPTPVKL_ 0 0 0 nc|ENSG00000109685|O96028-3|NSD2 nc|ENSG00000109685|O96028-3|NSD2 nc|ENSG00000109685|O96028-3|NSD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.8245849609375 2 541.815867 1081.61718 -0.16425 -8.8991E-05 -0.10114 -5.4799E-05 -0.26539 -0.00014379 541.8154427492447 65.817 0.21526 65.332 65.195 65.41 -0.48428 18 8 3 0 0 0 0.1176 1 35881 35881 36.127 15.673 1 2358700 38345 16112 25679 26168 44940 44940 0.07963790516805602 LWEPTPVKL 9 Unmodified _LWEPTPVKL_ 0 0 0 nc|ENSG00000109685|O96028-3|NSD2 nc|ENSG00000109685|O96028-3|NSD2 nc|ENSG00000109685|O96028-3|NSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8167724609375 2 541.815867 1081.61718 0.6325 0.0003427 0.63881 0.00034612 1.2713 0.00068882 541.8155194977782 65.262 0.37048 65.262 65.016 65.387 1.5259E-05 44 17 3 0 0 0 0.047788 1 35747 35747 45.7 24.828 1 9092100 38346 16112 25679 26168 44941 44941 0.07963790516805602 LWERTREPL 9 Unmodified _LWERTREPL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5565490722656 3 400.555895 1198.64586 0.67884 0.00027191 0.74958 0.00030025 1.4284 0.00057216 400.55633883989645 32.814 0.31147 28.958 28.732 29.044 -3.8562 36 16 3 0 0 0 0.15882 1 18723 18723 27.223 2.3417 1 18004000 38347 894 25680 26169 44942 44942 0.05447908145947622 LWERTREPL 9 Unmodified _LWERTREPL_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 400.555895 1198.64586 0.67884 0.00027191 0.74958 0.00030025 1.4284 0.00057216 400.55633883989645 32.814 0.31147 28.958 28.732 29.044 -3.8562 -0.11691 0.00024917 NaN 27.223 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 18004000 38348 894 25680 26169 0.05447908145947622 LWFFFFFW 8 Unmodified _LWFFFFFW_ 0 0 0 REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.305419921875 2 620.304939 1238.59532 -0.10187 -6.319E-05 1.0069 0.00062457 0.905 0.00056138 620.3056412487867 22.385 0.17728 22.408 22.315 22.492 0.022894 10 7 2 0 0 0 8.7369 1 11409 11409 0.79363 0.19213 1 587090 + 38349 25606 25681 26170 44943 44943 -0.014429694411091987 LWFFYLKDTMF 11 Unmodified _LWFFYLKDTMF_ 0 0 0 ENST00000476917.5_1_10:126095965-126100767:-|nuORF ENST00000476917.5_1_10:126095965-126100767:-|nuORF ENST00000476917.5_1_10:126095965-126100767:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.253662109375 3 504.252825 1509.73665 0.18406 9.2815E-05 -0.15147 -7.6382E-05 0.03259 1.6434E-05 504.25312644739194 77.137 0.48266 77.187 76.959 77.441 0.05011 62 19 5 0 0 0 0.70701 2 42541 42541;42643 1.4551 0.94916 1 6708900 38350 13989 25682 26171 44944;44945 44944 0.0021661607920577808 LWFLCLPTY 9 Unmodified _LWFLCLPTY_ 0 0 0 DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.870361328125 3 385.868423 1154.58344 1.1509 0.00044409 2.6179 0.0010102 3.7688 0.0014543 385.8696327416574 42.325 0.29128 37.641 37.44 37.732 -4.6846 28 18 2 0 0 0 0.48152 1 25594 25594 8.7454 1.1365 1 13492000 38351 234 25683 26172 44946 44946 0.012330457534062589 LWFLCLPTY 9 Unmodified _LWFLCLPTY_ 0 0 0 DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.868423 1154.58344 -0.13083 -5.0484E-05 3.4265 0.0013222 3.2956 0.0012717 385.86972448680325 37.646 0.24072 37.663 37.532 37.773 0.01704 0.011294 0.00037341 NaN 8.7454 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4565500 38352 234 25683 26172 0.012330457534062589 LWFLCLPTY 9 Unmodified _LWFLCLPTY_ 0 0 0 DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant DENND4B|p.A781T|1|0.33|ENSG00000198837|chr1:153936640-153936640|C/T|missense_variant MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 385.868423 1154.58344 1.1509 0.00044409 2.6179 0.0010102 3.7688 0.0014543 385.8696327416574 42.325 0.29128 37.641 37.44 37.732 -4.6846 -0.011294 -0.0005626 NaN 8.7454 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 13492000 38353 234 25683 26172 0.012330457534062589 LWFWDVMLS 9 Unmodified _LWFWDVMLS_ 0 0 0 REV__ENST00000496184.1_1_7:1477093-1477677:-|nuORF REV__ENST00000496184.1_1_7:1477093-1477677:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.865966796875 3 399.531811 1195.5736 -0.59094 -0.0002361 -1.1792 -0.00047113 -1.7701 -0.00070723 399.53143457939143 17.971 0.17763 17.971 17.868 18.046 0 37 26 2 0 0 0 0.61381 1 8921 8921 0.23584 0 1 637400 + 38354 21957 25684 26173 44947 44947 -0.016361422519821645 LWGDELTAL 9 Unmodified _LWGDELTAL_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2656860351562 2 509.266207 1016.51786 0.54216 0.00027611 -1.7075 -0.00086955 -1.1653 -0.00059345 509.2651834256543 81.071 0.29077 80.579 80.402 80.693 -0.49247 23 16 2 0 0 0 0.12841 1 44375 44375 30.225 3.3412 1 3509300 + 38355 18564 25685 26174 44948 44948 0.010263478320325703 LWGDELTAL 9 Unmodified _LWGDELTAL_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.266207 1016.51786 0.34958 0.00017803 -6.3461 -0.0032318 -5.9965 -0.0030538 509.76215685719836 80.579 0.17705 80.579 80.495 80.672 0 -7.8425E-05 -0.0044984 NaN 30.225 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 621750 + 38356 18564 25685 26174 0.010263478320325703 LWGDELTAL 9 Unmodified _LWGDELTAL_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.266207 1016.51786 0.54216 0.00027611 -1.7075 -0.00086955 -1.1653 -0.00059345 509.2651834256543 81.071 0.29077 80.579 80.402 80.693 -0.49247 7.8425E-05 0.00022621 NaN 30.225 23 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3509300 + 38357 18564 25685 26174 0.010263478320325703 LWGRALWPHF 10 Unmodified _LWGRALWPHF_ 0 0 0 ENST00000546023.1_1_6:160210088-160210586:-|nuORF ENST00000546023.1_1_6:160210088-160210586:-|nuORF ENST00000546023.1_1_6:160210088-160210586:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2327270507812 3 428.232975 1281.6771 0.35454 0.00015183 -0.57517 -0.00024631 -0.22063 -9.4479E-05 428.2329339709685 61.988 0.29405 61.955 61.828 62.122 -0.032787 26 14 2 0 0 0 0.60623 1 33863 33863 6.1918 2.0023 1 9353200 38358 15102 25686 26175 44949 44949 0.04752525970661736 LWGWVHYR 8 Unmodified _LWGWVHYR_ 0 0 0 ENST00000350878.8_1_2:102440511-102446033:+|nuORF ENST00000350878.8_1_2:102440511-102446033:+|nuORF ENST00000350878.8_1_2:102440511-102446033:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8614807128906 3 372.862771 1115.56648 NaN NaN NaN NaN NaN NaN NaN 18.395 1 18.401 17.901 18.901 0.0060463 0 0 0 0.88449 1 9321 9321 19.257 0 1 38359 12044 25687 26176 44950 44950 0.013323059824642769 LWIQRYWRCH 10 Unmodified _LWIQRYWRCH_ 0 0 0 ENST00000429160.1_1_3:196089185-196089269:-|nuORF ENST00000429160.1_1_3:196089185-196089269:-|nuORF ENST00000429160.1_1_3:196089185-196089269:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 730.8694458007812 2 730.872048 1459.72954 NaN NaN NaN NaN NaN NaN NaN 95.576 1 95.576 95.076 96.076 0 0 0 0 1.0019 1 52827 52827 0.45834 0.10771 1 38360 13216 25688 26177 44951 44951 0.018067410419916996 LWIWGDSFVG 10 Unmodified _LWIWGDSFVG_ 0 0 0 ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2974853515625 2 590.295299 1178.57605 1.0085 0.00059531 1.742 0.0010283 2.7505 0.0016236 590.2963813823322 66.165 0.5479 66.175 65.993 66.54 0.0095596 73 27 3 0 0 0 0.50944 1 36399 36399 15.847 0.078963 1 13445000 38361 14638 25689 26178 44952 44952 -0.00609970522691583 LWKFPEDFGD 10 Unmodified _LWKFPEDFGD_ 0 0 0 nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B;nc|ENSG00000213047|Q6P3S1-3|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5333251953125 3 418.532756 1252.57644 NaN NaN NaN NaN NaN NaN NaN 27.906 1 27.86 27.36 28.36 -0.046408 0 0 0 1.0024 1 14393 14393 0.13989 0.017027 1 38362 10418 25690 26179 44953 44953 -0.03974595593490449 LWKGRIKYRVE 11 Unmodified _LWKGRIKYRVE_ 0 0 0 REV__ENSG00000064309|ENST00000531738|CDON REV__ENSG00000064309|ENST00000531738|CDON MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.6228942871094 3 483.289261 1446.84595 0.23141 0.00011184 -1.7283 -0.00083528 -1.4969 -0.00072344 483.6225319799007 14.671 0.097656 12.168 12.123 12.221 -2.5029 19 12 2 0 0 0 0.72131 1 7460 7460 2.2527 0 1 1767100 + 38363 17353 25691 26180 44954 44954 0.14040382813504948 LWKIVENF 8 Unmodified _LWKIVENF_ 0 0 0 REV__ENST00000443628.2_1_X:114009389-114009617:-|nuORF REV__ENST00000443628.2_1_X:114009389-114009617:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1985473632812 3 350.199049 1047.57532 1.3962 0.00048896 -1.5739 -0.00055118 -0.17767 -6.2218E-05 350.1983571749315 43.127 0.33261 38.362 38.18 38.513 -4.7648 34 22 2 0 0 0 0.80143 1 26121 26121 3.9444 0 1 17544000 + 38364 27115 25692 26181 44955 44955 0.05343234828296772 LWKKKFKK 8 Unmodified _LWKKKFKK_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MSMS AL20221201_MKP_PDAC_01 4 553.3675537109375 2 553.365862 1104.71717 NaN NaN NaN NaN NaN NaN NaN 106.24 1 100.06 99.565 100.56 -6.1757 0 0 0 0.97444 1 71124 71124 0 0 1 38365 3575 25693 26182 44956 44956 0.16900072641260522 LWKLITKLLKI 11 Unmodified _LWKLITKLLKI_ 0 0 0 REV__nc|ENSG00000068878|Q14997-3|PSME4 REV__nc|ENSG00000068878|Q14997-3|PSME4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.970703125 2 684.970691 1367.92683 NaN NaN NaN NaN NaN NaN NaN 0.44776 1 0.4257 -0.074301 0.9257 -0.022065 0 0 0 0.9435 1 240 240 0 0 1 + 38366 17443 25694 26183 44957 44957 0.2575827080374893 LWKLITKLLKI 11 Unmodified _LWKLITKLLKI_ 0 0 0 REV__nc|ENSG00000068878|Q14997-3|PSME4 REV__nc|ENSG00000068878|Q14997-3|PSME4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.3030395507812 2 684.970691 1367.92683 NaN NaN NaN NaN NaN NaN NaN 1.2004 1 1.1798 0.67978 1.6798 -0.020623 0 0 0 0.9435 1 620 620 0 0 1 + 38367 17443 25694 26183 44958 44958 0.2575827080374893 LWKLLIELIF 10 Unmodified _LWKLLIELIF_ 0 0 0 REV__nc|ENSG00000166762|Q96P56-4|CATSPER2 REV__nc|ENSG00000166762|Q96P56-4|CATSPER2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.4080200195312 2 644.407392 1286.80023 NaN NaN NaN NaN NaN NaN NaN 83.169 1 83.232 82.732 83.732 0.063171 0 0 0 1.0019 1 46011 46011 0.45834 0 1 + 38368 22147 25695 26184 44959 44959 0.16830344578602308 LWKLVILLPLI 11 Unmodified _LWKLVILLPLI_ 0 0 0 ENSG00000134115|ENST00000446702|CNTN6 ENSG00000134115|ENST00000446702|CNTN6 ENSG00000134115|ENST00000446702|CNTN6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.9712524414062 3 440.972099 1319.89447 NaN NaN NaN NaN NaN NaN NaN 14.549 1 14.518 14.018 15.018 -0.030868 0 0 0 0.9435 1 7087 7087 0 0 1 38369 4559 25696 26185 44960 44960 0.24731483400773868 LWKPALTA 8 Unmodified _LWKPALTA_ 0 0 0 REV__AluJr_dup84017|chr22:24220470-24220746:+|1.123637248190109|0.3639411179145401|1.63|179.0|19|3|anti-sense REV__AluJr_dup84017|chr22:24220470-24220746:+|1.123637248190109|0.3639411179145401|1.63|179.0|19|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2685241699219 2 450.271096 898.527639 -0.24991 -0.00011253 -4.2806 -0.0019274 -4.5305 -0.00204 450.2689426790645 29.815 0.17035 29.815 29.76 29.931 0 12 10 2 0 0 0 0.75262 1 15502 15502 12.532 0 1 2507000 + 38370 16710 25697 26186 44961 44961 0.07431580628065149 LWKPGIELL 9 Unmodified _LWKPGIELL_ 0 0 0 ENSG00000214491|ENST00000402034|SEC14L6 ENSG00000214491|ENST00000402034|SEC14L6 ENSG00000214491|ENST00000402034|SEC14L6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8265380859375 2 534.826235 1067.63792 NaN NaN NaN NaN NaN NaN NaN 80.13 1 80.187 79.687 80.687 0.057587 0 0 0 0.53226 1 44283 44283 14.838 0.93222 1 38371 10495 25698 26187 44962 44962 0.10680380896474162 LWKRLLIKRL 10 Unmodified _LWKRLLIKRL_ 0 0 0 REV__ENST00000369393.7_1_6:90432849-90433274:-|nuORF REV__ENST00000369393.7_1_6:90432849-90433274:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.9583740234375 2 669.958449 1337.90235 NaN NaN NaN NaN NaN NaN NaN 104.14 1 104.09 103.59 104.59 -0.048737 0 0 0 1.0061 1 57823 57823 0 0 1 + 38372 26034 25699 26188 44963 44963 0.24691055440871423 LWLFLETGQL 10 Unmodified _LWLFLETGQL_ 0 0 0 ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139686620-139687281:+|nuORF ENSG00000244187|ENST00000290079|TMEM141 ENSG00000244187|ENST00000290079|TMEM141 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5631408691406 3 407.228897 1218.66486 1.3259 0.00053995 -1.0199 -0.00041534 0.30599 0.00012461 407.2286482934715 21.408 0.3978 18.673 18.485 18.882 -2.7348 125 35 4 0 0 0 0.5802 1 11382 11382 12.175 2.4105 1 48187000 38373 10726 25700 26189 44964 44964 0.06427444716996433 LWLKRCRI 8 Unmodified _LWLKRCRI_ 0 0 0 nc|ENSG00000142405|P59046-5|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2209777832031 3 363.223423 1086.64844 -0.28392 -0.00010313 0.20971 7.617E-05 -0.074215 -2.6957E-05 363.22322046886677 36.38 0.40051 36.405 36.117 36.518 0.024971 44 17 4 0 0 0 0.80722 1 19244 19244 1.4819 1.4819 1 6655300 38374 16235 25701 26190 44965 44965 0.10858085069912704 LWLKRCRI 8 Unmodified _LWLKRCRI_ 0 0 0 nc|ENSG00000142405|P59046-5|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2233581542969 3 363.223423 1086.64844 -0.32506 -0.00011807 0.60148 0.00021847 0.27642 0.0001004 363.2235295766317 36.692 0.88363 36.714 36.515 37.398 0.021545 92 40 3 0 0 0 0.80676 1 19503 19503 1.6526 1.6526 1 16129000 38375 16235 25701 26190 44966 44966 0.10858085069912704 LWLLEWVL 8 Unmodified _LWLLEWVL_ 0 0 0 nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.878173828125 3 357.879428 1070.61645 NaN NaN NaN NaN NaN NaN NaN 31.647 1 31.518 31.018 32.018 -0.12915 0 0 0 0.96606 1 16461 16461 7.2892 3.9696 1 38376 321 25702 26191 44967 44967 0.08396995867747137 LWLLLEWNM 9 Unmodified _LWLLLEWNM_ 0 0 0 REV__ENST00000555171.1_1_14:60622706-60632135:-|nuORF REV__ENST00000555171.1_1_14:60622706-60632135:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 609.3267211914062 2 609.323002 1216.63145 NaN NaN NaN NaN NaN NaN NaN 96.483 1 90.307 89.807 90.807 -6.1757 0 0 0 0.56093 1 63940 63940 20.871 7.3633 1 + 38377 18092 25703 26192 44968 44968 0.03180119673424997 LWLREGPSR 9 Unmodified _LWLREGPSR_ 0 0 0 ENSG00000170917|ENST00000304430|NUDT6;ENST00000503370.5_1_4:123814341-123838767:-|nuORF;ENST00000513517.1_1_4:123818758-123838869:-|nuORF ENSG00000170917|ENST00000304430|NUDT6 ENSG00000170917|ENST00000304430|NUDT6 MSMS AL20221201_MKP_PDAC_01 4 557.31298828125 2 557.311815 1112.60908 NaN NaN NaN NaN NaN NaN NaN 93.282 1 87.107 86.607 87.607 -6.1757 0 0 0 0.18753 1 61733 61733 32.305 3.811 1 38378 8042 25704 26193 44969 44969 0.057276563200503006 LWLVYRPSI 9 Unmodified _LWLVYRPSI_ 0 0 0 REV__ENST00000420783.7_1_3:49051272-49051362:+|nuORF REV__ENST00000420783.7_1_3:49051272-49051362:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.7954711914062 2 573.837134 1145.65972 0.6946 0.00039859 0.19654 0.00011278 0.89114 0.00051137 574.3385972123762 48.074 0.32476 42.84 42.728 43.053 -5.2339 35 19 2 0 0 0 0.19613 1 29941 29941 7.9102 0 1 11319000 + 38379 26839 25705 26194 44970 44970 0.09271185645025071 LWMKKLRT 8 Unmodified _LWMKKLRT_ 0 0 0 ENST00000554315.5_1_14:73759572-73763950:-|nuORF ENST00000554315.5_1_14:73759572-73763950:-|nuORF ENST00000554315.5_1_14:73759572-73763950:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3272705078125 2 538.325879 1074.63721 1.5461 0.0008323 1.3107 0.0007056 2.8568 0.0015379 538.3264147318213 92.503 0.66565 92.533 92.259 92.925 0.030197 103 25 5 0 0 0 0.80992 1 51455 51455 0.69038 0 1 397650000 38380 15208 25706 26195 44971 44971 0.10287262975793965 LWMQLKRRLK 10 Unmodified _LWMQLKRRLK_ 0 0 0 REV__ENSG00000183691|ENST00000332822|NOG REV__ENSG00000183691|ENST00000332822|NOG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.4236450195312 2 686.423916 1370.83328 NaN NaN NaN NaN NaN NaN NaN 20.715 1 20.725 20.225 21.225 0.010553 0 0 0 1.0024 1 10572 10572 0.40072 0 1 + 38381 23367 25707 26196 44972 44972 0.16269648149659588 LWMRSDKF 8 Unmodified _LWMRSDKF_ 0 0 0 REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF REV__ENST00000532383.5_1_11:10829079-10829223:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5204467773438 3 361.519905 1081.53789 -0.097591 -3.5281E-05 0.32347 0.00011694 0.22588 8.1659E-05 361.52048749492104 37.885 0.21066 37.902 37.753 37.963 0.01704 18 9 4 0 0 0 0.79783 1 20128 20128 5.7319 1.7875 1 2239300 + 38382 28364 25708 26197 44973 44973 0.0003782029100420914 LWNALIRG 8 Unmodified _LWNALIRG_ 0 0 0 REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF REV__ENST00000486937.5_1_21:47666536-47687014:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7794494628906 2 471.779619 941.544686 NaN NaN NaN NaN NaN NaN NaN 62.109 1 62.109 61.609 62.609 0 0 0 0 0.96305 1 34634 34634 7.9102 1.5561 1 + 38383 21532 25709 26198 44974 44974 0.07157501233893981 LWNFFVFL 8 Unmodified _LWNFFVFL_ 0 0 0 REV__ENSG00000043591|ENST00000369295|ADRB1 REV__ENSG00000043591|ENST00000369295|ADRB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2974243164062 2 543.294571 1084.57459 NaN NaN NaN NaN NaN NaN NaN 83.375 1 83.375 82.875 83.875 0 0 0 0 0.97348 1 46240 46240 5.7604 1.4312 1 + 38384 17214 25710 26199 44975 44975 0.03568440179242316 LWNLNNYRT 9 Unmodified _LWNLNNYRT_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3064575195312 2 597.306729 1192.59891 -0.066621 -3.9793E-05 -0.46964 -0.00028052 -0.53626 -0.00032031 597.3064497761225 46.504 0.74783 41.423 41.082 41.83 -5.0805 332 108 4 0 0 0 0.25681 1 28666 28666 19.257 19.257 1 742500000 38385 8403 25711 26200 44976 44976 0.01031048594791173 LWNQQGTDDI 10 Unmodified _LWNQQGTDDI_ 0 0 0 REV__ENST00000470070.6_1_3:69247847-69370051:-|nuORF REV__ENST00000470070.6_1_3:69247847-69370051:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2781372070312 2 595.277835 1188.54112 0.36735 0.00021867 0.27135 0.00016153 0.6387 0.0003802 595.2776522468686 57.585 0.33517 57.585 57.419 57.754 0 27 16 2 0 0 0 0.62068 1 32127 32127 10.074 0 1 10612000 + 38386 18920 25712 26201 44977 44977 -0.04561258121270839 LWPECLRF 8 Unmodified _LWPECLRF_ 0 0 0 ENST00000359878.7_1_2:201374367-201374727:-|nuORF ENST00000359878.7_1_2:201374367-201374727:-|nuORF ENST00000359878.7_1_2:201374367-201374727:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2747802734375 2 532.273312 1062.53207 0.51733 0.00027536 0.99306 0.00052858 1.5104 0.00080394 532.2735204309955 84.324 0.62626 78.148 77.891 78.517 -6.1757 58 35 2 0 0 0 0.63229 1 55395 55395 23.148 0 1 18192000 38387 12151 25713 26202 44978 44978 0.003307217793462769 LWPGNGIVQI 10 Unmodified _LWPGNGIVQI_ 0 0 0 REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF REV__ENST00000461859.1_1_1:151535003-151537177:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2102355957031 3 366.209836 1095.60768 0.086532 3.1689E-05 1.0675 0.00039093 1.154 0.00042262 366.2107584078171 51.783 0.4519 51.724 51.553 52.005 -0.058918 42 21 3 0 0 0 0.64183 1 28032 28032 8.9762 0.82072 1 1866700 + 38388 27325 25714 26203 44979 44979 0.0637002223129457 LWPIQSGILHF 11 Unmodified _LWPIQSGILHF_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8690795898438 2 655.866423 1309.71829 1.149 0.00075359 1.634 0.0010717 2.783 0.0018253 655.8680889942801 100.05 0.13467 93.878 93.804 93.938 -6.1757 19 8 4 0 0 0 0.055321 1 66844 66844 62.573 49.53 1 19901000 38389 8942 25715 26204 44980 44980 0.07582242219496038 LWPNFLLIF 9 Unmodified _LWPNFLLIF_ 0 0 0 REV__ENSG00000125780|ENST00000381458|TGM3 REV__ENSG00000125780|ENST00000381458|TGM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8350219726562 2 581.836603 1161.65865 -0.015319 -8.9132E-06 -2.52 -0.0014662 -2.5353 -0.0014751 581.8350332492331 98.859 0.10246 92.683 92.626 92.728 -6.1757 12 7 2 0 0 0 0.023164 1 65667 65667 60.39 12.641 1 50883000 + 38390 19514 25716 26205 44981 44981 0.08428971276134689 LWPTLAALAL 10 Unmodified _LWPTLAALAL_ 0 0 0 ENSG00000117407|ENST00000372359|ARTN;nc|ENSG00000117407|Q5T4W7-3|ARTN;nc|ENSG00000117407|Q5T4W7-2|ARTN ENSG00000117407|ENST00000372359|ARTN ENSG00000117407|ENST00000372359|ARTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8267211914062 2 534.826235 1067.63792 1.1404 0.00060992 0.5666 0.00030303 1.707 0.00091295 534.8271392676972 96 0.59272 89.825 89.66 90.253 -6.1757 62 32 3 0 0 0 0.1028 1 63661 63661 46.021 0.32134 1 25811000 38391 3301 25717 26206 44982 44982 0.10680380896474162 LWPWFERLDVY 11 Unmodified _LWPWFERLDVY_ 0 0 0 nc|ENSG00000065621|Q9H4Y5-2|GSTO2;nc|ENSG00000065621|Q9H4Y5-3|GSTO2;ENSG00000065621|ENST00000338595|GSTO2;ENST00000467629.1_1_10:106054804-106059039:+|nuORF nc|ENSG00000065621|Q9H4Y5-2|GSTO2 nc|ENSG00000065621|Q9H4Y5-2|GSTO2 MSMS AL20221201_MKP_PDAC_01 4 762.3914184570312 2 762.387719 1522.76089 NaN NaN NaN NaN NaN NaN NaN 73.657 1 67.481 66.981 67.981 -6.1757 0 0 0 0.73356 1 48165 48165 15.248 0.8431 1 38392 913 25718 26207 44983 44983 0.02041592557088734 LWQELEVSCW 10 Unmodified _LWQELEVSCW_ 0 0 0 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 ENSG00000196865|ENST00000369301|NHLRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.5382690429688 3 431.537513 1291.59071 0.54191 0.00023385 1.1136 0.00048058 1.6555 0.00071443 431.53820946931836 48.016 0.23592 47.663 47.535 47.771 -0.3526 26 11 3 0 0 0 0.69377 1 25770 25770 1.7423 0.41263 1 5399600 38393 9877 25719 26208 44984 44984 -0.0434226643681086 LWQKVDDRFFW 11 Unmodified _LWQKVDDRFFW_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F;nc|ENSG00000198825|Q9Y2H2-2|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 770.3890380859375 2 770.390793 1538.76703 NaN NaN NaN NaN NaN NaN NaN 106.41 1 106.36 105.86 106.86 -0.048103 0 0 0 0.94313 1 58981 58981 0.26902 0.26902 1 38394 10164 25720 26209 44985 44985 0.019201107885919555 LWREPDPTL 9 Unmodified _LWREPDPTL_ 0 0 0 REV__ENST00000344851.4_1_6:158658370-158659030:-|nuORF REV__ENST00000344851.4_1_6:158658370-158659030:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7982788085938 2 563.798206 1125.58186 1.0399 0.00058627 -0.76744 -0.00043268 0.27242 0.00015359 563.7978085450545 50.508 0.30563 50.095 49.931 50.236 -0.41351 34 14 3 0 0 0 0.30562 1 27265 27265 16.942 0 1 17088000 + 38395 25748 25721 26210 44986 44986 0.024091279889944417 LWRGRWRWWEH 11 Unmodified _LWRGRWRWWEH_ 0 0 0 ENST00000361226.7_1_9:35546604-35546643:+|nuORF ENST00000361226.7_1_9:35546604-35546643:+|nuORF ENST00000361226.7_1_9:35546604-35546643:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.4263916015625 2 834.426368 1666.83818 NaN NaN NaN NaN NaN NaN NaN 89.087 1 88.582 88.082 89.082 -0.50423 0 0 0 0.9435 1 48713 48713 0 0 1 38396 12178 25722 26211 44987 44987 0.03143668336633709 LWRINSHWTL 10 Unmodified _LWRINSHWTL_ 0 0 0 ENST00000570184.1_2_16:57212700-57219950:-|nuORF ENST00000570184.1_2_16:57212700-57219950:-|nuORF ENST00000570184.1_2_16:57212700-57219950:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.3590698242188 2 663.359296 1324.70404 NaN NaN NaN NaN NaN NaN NaN 81.744 1 81.744 81.244 82.244 0 0 0 0 0.97855 1 45364 45364 2.9952 0.26005 1 38397 15472 25723 26212 44988 44988 0.054675897912147775 LWRKQRLWKWW 11 Unmodified _LWRKQRLWKWW_ 0 0 0 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 843.481689453125 2 843.480611 1684.94667 NaN NaN NaN NaN NaN NaN NaN 71.566 1 71.566 71.066 72.066 0 0 0 0 0.9435 1 39861 39861 0 0 1 38398 79 25724 26213 44989 44989 0.13159459587063793 LWRMVMWPEPT 11 Unmodified _LWRMVMWPEPT_ 0 0 0 REV__ENST00000507866.6_1_4:7743315-7743591:+|nuORF REV__ENST00000507866.6_1_4:7743315-7743591:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.5752258300781 3 482.573792 1444.69955 0.096711 4.667E-05 2.9426 0.00142 3.0393 0.0014667 482.5753172893934 37.955 0.35739 37.972 37.773 38.13 0.01704 24 16 2 0 0 0 0.71618 1 20143 20143 1.1098 0 1 2381300 + 38399 28107 25725 26214 44990 44990 -0.005013787382040391 LWRPSMLKL 9 Unmodified _LWRPSMLKL_ 0 0 0 ENST00000519379.1_1_1:231069579-231072028:-|nuORF ENST00000519379.1_1_1:231069579-231072028:-|nuORF ENST00000519379.1_1_1:231069579-231072028:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 572.3416748046875 2 572.338987 1142.66342 NaN NaN NaN NaN NaN NaN NaN 49.863 1 44.324 43.824 44.824 -5.5391 0 0 0 0.41346 1 31198 31198 19.257 0.88389 1 38400 14706 25726 26215 44991 44991 0.09779532147240388 LWRPWPRL 8 Unmodified _LWRPWPRL_ 0 0 0 REV__ENST00000295920.7_1_3:155588489-155621652:+|nuORF REV__ENST00000295920.7_1_3:155588489-155621652:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.2020263671875 3 375.222299 1122.64507 1.3008 0.00048809 -1.0366 -0.00038896 0.26417 9.9124E-05 375.2219081264758 42.098 0.29718 37.414 37.234 37.531 -4.6846 40 18 3 0 0 0 8.7369 1 25346 25346 11.64 0.81637 1 18275000 + 38401 25265 25727 26216 44992 44992 0.08865158287539998 LWRQHYLYRS 10 Unmodified _LWRQHYLYRS_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 711.3761596679688 2 711.375478 1420.7364 NaN NaN NaN NaN NaN NaN NaN 31.728 1 31.758 31.258 32.258 0.030106 0 0 0 0.99388 1 16636 16636 1.3295 0.13619 1 + 38402 24000 25728 26217 44993 44993 0.04286377194216584 LWRRRGEQSI 10 Unmodified _LWRRRGEQSI_ 0 0 0 nc|ENSG00000165072|Q7Z304-2|MAMDC2;ENSG00000165072|ENST00000377182|MAMDC2 nc|ENSG00000165072|Q7Z304-2|MAMDC2 nc|ENSG00000165072|Q7Z304-2|MAMDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.8642578125 2 650.865277 1299.716 1.2232 0.00079611 -1.4991 -0.0009757 -0.27594 -0.0001796 650.8642459039801 54.258 0.23859 48.392 48.23 48.469 -5.8653 20 13 2 0 0 0 0.077785 1 34384 34384 51.63 4.0354 1 12103000 38403 7286 25729 26218 44994 44994 0.07813206534433448 LWRRWMRPRMQ 11 Unmodified _LWRRWMRPRMQ_ 0 0 0 ENST00000391992.3_1_12:9181361-9181625:-|nuORF ENST00000391992.3_1_12:9181361-9181625:-|nuORF ENST00000391992.3_1_12:9181361-9181625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2916870117188 3 539.290613 1614.85001 -0.40088 -0.00021619 0.43987 0.00023722 0.038992 2.1028E-05 539.2909596847027 37.082 0.23059 36.832 36.688 36.919 -0.2497 26 9 3 0 0 0 0.74046 1 19458 19458 0.45452 0.38125 1 6090900 38404 12660 25730 26219 44995 44995 0.067178257639398 LWRTVLVVK 9 Unmodified _LWRTVLVVK_ 0 0 0 nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3616333007812 2 557.360776 1112.707 1.692 0.00094305 -1.0123 -0.00056424 0.67965 0.00037881 557.3598495591565 105.74 0.16277 99.561 99.489 99.652 -6.1757 24 15 2 0 0 0 0.59532 1 70827 70827 1.6526 1.1943 1 2614000 38405 6317 25731 26220 44996 44996 0.1551546491600675 LWRWGAYQI 9 Unmodified _LWRWGAYQI_ 0 0 0 ENST00000545314.5_1_1:65693683-65693761:+|nuORF ENST00000545314.5_1_1:65693683-65693761:+|nuORF ENST00000545314.5_1_1:65693683-65693761:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8170776367188 2 596.816733 1191.61891 -0.015813 -9.4373E-06 -0.53485 -0.00031921 -0.55067 -0.00032865 596.816553610483 27.963 0.55006 24.815 24.547 25.097 -3.1482 79 29 3 0 0 0 0.41742 1 15682 15682 11.64 0.81637 1 49749000 38406 15088 25732 26221 44997 44997 0.030768443254146405 LWSAWQDLSSQ 11 Unmodified _LWSAWQDLSSQ_ 0 0 0 REV__ENSG00000087903|ENST00000303657|RFX2 REV__ENSG00000087903|ENST00000303657|RFX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8799133300781 3 440.878815 1319.61462 NaN NaN NaN NaN NaN NaN NaN 17.636 1 17.65 17.15 18.15 0.013865 0 0 0 0.94299 1 8785 8785 0.36667 0.13083 1 + 38407 17795 25733 26222 44998 44998 -0.032407096788119816 LWTIKRDIIDY 11 Unmodified _LWTIKRDIIDY_ 0 0 0 ENSG00000138892|ENST00000433387|TTLL8;nc|ENSG00000138892|A6PVC2-2|TTLL8;nc|ENSG00000138892|A6PVC2|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 ENSG00000138892|ENST00000433387|TTLL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2700500488281 3 479.269643 1434.7871 0.68603 0.00032879 0.14252 6.8305E-05 0.82855 0.0003971 479.26967617416034 56.894 0.29704 56.826 56.658 56.955 -0.068737 47 14 4 0 0 0 0.67037 1 30914 30914 7.0371 2.6309 1 13619000 38408 5117 25734 26223 44999 44999 0.08709861728561918 LWTLFMLIAL 10 Unmodified _LWTLFMLIAL_ 0 0 0 REV__nc|ENSG00000128791|Q9GZX9-2|TWSG1 REV__nc|ENSG00000128791|Q9GZX9-2|TWSG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 407.8709106445312 3 407.575239 1219.70389 0.80955 0.00032995 0.40134 0.00016357 1.2109 0.00049353 407.57520744636037 43.56 0.35579 38.795 38.663 39.019 -4.7648 36 21 3 0 0 0 0.23325 1 26527 26527 5.7834 0 1 9523600 + 38409 19633 25735 26224 45000 45000 0.1028245374702692 LWVFRRRWRLN 11 Unmodified _LWVFRRRWRLN_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.9814453125 3 534.647782 1600.92152 0.82084 0.00043886 -2.0909 -0.0011179 -1.27 -0.00067901 534.9810063094914 57.947 0.17464 57.881 57.775 57.95 -0.066036 12 8 2 0 0 0 0.74157 1 31571 31571 0.094841 0.021578 1 2467200 38410 7916 25736 26225 45001 45001 0.1450940478450775 LWVHPIDIE 9 Unmodified _LWVHPIDIE_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7667236328125 2 561.303124 1120.5917 -0.067536 -3.7908E-05 -2.9147 -0.001636 -2.9823 -0.0016739 561.30144563085 33.396 0.20502 33.237 33.118 33.323 -0.15918 11 7 2 0 0 0 0.21572 1 17355 17355 3.9444 0 1 830130 + 38411 18939 25737 26226 45002 45002 0.036223159943801875 LWVHPIDIE 9 Unmodified _LWVHPIDIE_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.303124 1120.5917 -0.15095 -8.4729E-05 -3.6324 -0.0020389 -3.7833 -0.0021236 561.3014214716321 33.376 0.12157 33.376 33.264 33.386 0 0.06976 -0.00026948 NaN 3.9444 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1459000 + 38412 18939 25737 26226 0.036223159943801875 LWVLKVLQH 9 Unmodified _LWVLKVLQH_ 0 0 0 ENST00000427396.5_1_7:89891366-89906408:+|nuORF;nc|ENSG00000105792|A5D8W1-4|CFAP69;nc|ENSG00000105792|A5D8W1-3|CFAP69;nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69 ENST00000427396.5_1_7:89891366-89906408:+|nuORF ENST00000427396.5_1_7:89891366-89906408:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2383422851562 3 379.237726 1134.69135 0.63253 0.00023988 1.3587 0.00051529 1.9913 0.00075517 379.238089497437 64.496 0.51064 64.011 63.592 64.102 -0.48512 36 23 2 0 0 0 0.61801 1 35156 35156 0.26902 0 1 910260 38413 2364 25738 26227 45003 45003 0.12939178399005868 LWVLKVLQH 9 Unmodified _LWVLKVLQH_ 0 0 0 ENST00000427396.5_1_7:89891366-89906408:+|nuORF;nc|ENSG00000105792|A5D8W1-4|CFAP69;nc|ENSG00000105792|A5D8W1-3|CFAP69;nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69 ENST00000427396.5_1_7:89891366-89906408:+|nuORF ENST00000427396.5_1_7:89891366-89906408:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2381591796875 3 379.237726 1134.69135 0.53296 0.00020212 1.4032 0.00053215 1.9362 0.00073426 379.2381930295539 71.829 0.38849 71.868 71.685 72.073 0.039024 37 18 3 0 0 0 0.61801 1 39537 39537 0.26902 0 1 2163100 38414 2364 25738 26227 45004 45004 0.12939178399005868 LWVRHYFWV 9 Unmodified _LWVRHYFWV_ 0 0 0 REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.9007873535156 3 435.901226 1304.68185 0.96152 0.00041913 -1.1254 -0.00049056 -0.16386 -7.1428E-05 435.9008319127857 52.478 0.43965 52.419 52.168 52.608 -0.058918 43 21 3 0 0 0 0.32235 1 28426 28426 16.149 5.2501 1 4003000 + 38415 29045 25739 26228 45005 45005 0.04169410113468075 LWVRHYFWV 9 Unmodified _LWVRHYFWV_ 0 0 0 REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF REV__ENST00000578748.6_1_17:27278935-27279106:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.9006958007812 3 435.901226 1304.68185 0.61065 0.00026618 -0.86367 -0.00037647 -0.25302 -0.00011029 435.9007562736012 77.272 1.1536 71.097 70.6 71.754 -6.1757 155 65 3 0 0 0 0.40476 1 50851 50851 12.241 1.3417 1 35985000 + 38416 29045 25739 26228 45006 45006 0.04169410113468075 LWVWHWRRWVH 11 Unmodified _LWVWHWRRWVH_ 0 0 0 ENST00000233202.10_1_2:219261288-219261426:+|nuORF ENST00000233202.10_1_2:219261288-219261426:+|nuORF ENST00000233202.10_1_2:219261288-219261426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 830.941650390625 2 830.941654 1659.86875 NaN NaN NaN NaN NaN NaN NaN 75.459 1 75.505 75.005 76.005 0.045959 0 0 0 0.9435 1 41616 41616 0 0 1 38417 11077 25740 26229 45007 45007 0.06521446721649227 LWWEKRQHYRE 11 Unmodified _LWWEKRQHYRE_ 0 0 0 ENST00000411999.1_1_2:197893450-197893558:-|nuORF ENST00000411999.1_1_2:197893450-197893558:-|nuORF ENST00000411999.1_1_2:197893450-197893558:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 815.9171752929688 2 815.915498 1629.81644 NaN NaN NaN NaN NaN NaN NaN 107.14 1 107.09 106.59 107.59 -0.047607 0 0 0 0.9435 1 59368 59368 0 0 1 38418 12982 25741 26230 45008 45008 0.026728187973958484 LWWFRVYVI 9 Unmodified _LWWFRVYVI_ 0 0 0 REV__ENSG00000265808|ENST00000578049|SEC22B REV__ENSG00000265808|ENST00000578049|SEC22B MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.9099426269531 3 427.90961 1280.707 0.32138 0.00013752 -0.088185 -3.7735E-05 0.23319 9.9786E-05 427.90959279736126 15.537 0.23017 13.01 12.888 13.118 -2.5273 113 56 3 0 0 0 0.58145 1 8024 8024 2.4985 0 1 4769000 + 38419 24604 25742 26231 45009 45009 0.0778746491603215 LWWSIYRPHN 10 Unmodified _LWWSIYRPHN_ 0 0 0 REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF REV__ENST00000508434.1_1_5:34033255-34043308:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3504638671875 2 686.351471 1370.68839 NaN NaN NaN NaN NaN NaN NaN 100.84 1 100.84 100.34 101.34 0 0 0 0 1.0024 1 55642 55642 0.40072 0 1 + 38420 28116 25743 26232 45010 45010 0.01787303274181795 LWWWGAAGL 9 Unmodified _LWWWGAAGL_ 0 0 0 REV__nc|ENSG00000172936|Q99836-3|MYD88 REV__nc|ENSG00000172936|Q99836-3|MYD88 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.27392578125 2 530.27417 1058.53379 NaN NaN NaN NaN NaN NaN NaN 60.934 1 60.934 60.434 61.434 0 0 0 0 0.70111 1 33982 33982 9.3474 0 1 + 38421 29787 25744 26233 45011 45011 0.006860988595917661 LWWWMCRM 8 Unmodified _LWWWMCRM_ 0 0 0 ENST00000243077.7_1_12:57592080-57592285:+|nuORF ENST00000243077.7_1_12:57592080-57592285:+|nuORF ENST00000243077.7_1_12:57592080-57592285:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5343933105469 3 404.515221 1210.52383 -0.53516 -0.00021648 -1.3669 -0.00055292 -1.902 -0.00076941 404.51480944433337 15.53 0.18604 15.516 15.44 15.626 -0.014066 127 66 3 0 0 0 0.8104 1 7654 7654 0.40072 0 1 1640400 38422 11110 25745 26234 45012 45012 -0.0730087173328684 LWWWSWRWWK 10 Unmodified _LWWWSWRWWK_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 810.4032592773438 2 810.406581 1618.79861 NaN NaN NaN NaN NaN NaN NaN 100.65 1 94.47 93.97 94.97 -6.1757 0 0 0 1.0024 1 67355 67355 0.40072 0.093686 1 38423 73 25746 26235 45013 45013 0.013961483331968338 LWYLVFWYI 9 Unmodified _LWYLVFWYI_ 0 0 0 REV__ENSG00000172938|ENST00000309106|MRGPRD REV__ENSG00000172938|ENST00000309106|MRGPRD MSMS AL20221201_MKP_PDAC_01 4 651.849853515625 2 651.84971 1301.68487 NaN NaN NaN NaN NaN NaN NaN 23.246 1 20.467 19.967 20.967 -2.7784 0 0 0 0.83812 1 12571 12571 0.6015 0.29447 1 + 38424 22690 25747 26236 45014 45014 0.04609240447621232 LWYWSNRFFYT 11 Unmodified _LWYWSNRFFYT_ 0 0 0 REV__ENSG00000154485|ENST00000368808|MMP21 REV__ENSG00000154485|ENST00000368808|MMP21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 791.8756103515625 2 791.877519 1581.74048 NaN NaN NaN NaN NaN NaN NaN 16.702 1 16.702 16.202 17.202 0 0 0 0 0.9435 1 8167 8167 0 0 1 + 38425 21231 25748 26237 45015 45015 -0.02711578102753265 LWYWSNRFFYT 11 Unmodified _LWYWSNRFFYT_ 0 0 0 REV__ENSG00000154485|ENST00000368808|MMP21 REV__ENSG00000154485|ENST00000368808|MMP21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 791.8778686523438 2 791.877519 1581.74048 NaN NaN NaN NaN NaN NaN NaN 17.686 1 17.686 17.186 18.186 0 0 0 0 0.9435 1 8734 8734 0 0 1 + 38426 21231 25748 26237 45016 45016 -0.02711578102753265 LYAALMPL 8 Unmodified _LYAALMPL_ 0 0 0 REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 891.4971313476562 1 891.500838 890.493561 0.30607 0.00027286 -0.41277 -0.00036799 -0.1067 -9.5126E-05 891.5004447604102 100.52 0.18901 94.345 94.215 94.404 -6.1757 27 11 3 0 0 0 0.18189 1 67177 67177 77.196 13.633 1 71478000 + 38427 18946 25749 26238 45017 45017 0.043934161448191844 LYAARQYFVQW 11 Unmodified _LYAARQYFVQW_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENST00000465985.1_1_20:35526176-35532601:-|nuORF nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 722.8726806640625 2 722.872237 1443.72992 0.66692 0.0004821 0.15391 0.00011126 0.82083 0.00059336 722.8727205576462 69.139 0.17635 69.169 69.073 69.249 0.030914 24 8 4 0 0 0 0.063019 1 38005 38005 69.105 56.864 1 2573600 38428 1951 25750 26239 45018 45018 0.025804392428199208 LYADHSDYAFL 11 Unmodified _LYADHSDYAFL_ 0 0 0 REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF REV__ENST00000398117.1_1_18:60795203-60795407:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8734130859375 3 438.871549 1313.59282 1.8573 0.0008151 -0.24454 -0.00010732 1.6127 0.00070778 438.8716938766999 81.574 0.46104 81.634 81.371 81.832 0.059929 58 17 4 0 0 0 0.65108 1 45054 45054 4.4062 0.28952 1 6760000 + 38429 26561 25751 26240 45019 45019 -0.05143514427390983 LYADTNLPL 9 Unmodified _LYADTNLPL_ 0 0 0 REV__ENSG00000100385|ENST00000216223|IL2RB REV__ENSG00000100385|ENST00000216223|IL2RB MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2745666503906 2 510.274032 1018.53351 0.65161 0.0003325 0.063914 3.2614E-05 0.71553 0.00036511 510.2744742945868 70.002 0.52106 63.826 63.665 64.186 -6.1757 44 29 2 0 0 0 0.022193 1 45725 45725 61.357 6.5839 1 32852000 + 38430 18057 25752 26241 45020 45020 0.02498634349092299 LYADTNLPL 9 Unmodified _LYADTNLPL_ 0 0 0 REV__ENSG00000100385|ENST00000216223|IL2RB REV__ENSG00000100385|ENST00000216223|IL2RB MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 510.274032 1018.53351 0.65161 0.0003325 0.063914 3.2614E-05 0.71553 0.00036511 510.2744742945868 70.002 0.52106 63.826 63.665 64.186 -6.1757 0.19221 -7.5318E-05 NaN 61.357 44 29 2 NaN NaN NaN NaN 0 NaN NaN 0 32852000 + 38431 18057 25752 26241 0.02498634349092299 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.285400390625 2 549.284931 1096.55531 0.42728 0.0002347 -0.13579 -7.4589E-05 0.29148 0.00016011 549.2848126295723 42.209 0.4188 42.209 42.049 42.468 0 69 18 5 0 0 0 0.00080371 2 22782 22782;22899 114.65 74.692 1 204320000 38432 8928 25753 26242 45021;45022 45021 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7858276367188 2 549.284931 1096.55531 0.053144 2.9191E-05 -0.19396 -0.00010654 -0.14081 -7.7347E-05 549.2847642725717 42.504 0.29662 42.197 42.064 42.36 -0.30682 47 14 4 0 0 0 4.0285E-07 2 22540 22540;22645 137.42 89.078 1 234060000 38433 8928 25753 26242 45023;45024 45023 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2843017578125 2 549.284931 1096.55531 0.15536 8.5335E-05 0.4025 0.00022109 0.55786 0.00030642 549.2851208716465 42.224 0.28075 42.215 42.08 42.36 -0.0088234 30 12 4 0 0 0 0.00013919 1 22585 22585 118.07 78.111 1 37157000 38434 8928 25753 26242 45025 45025 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2855834960938 2 549.284931 1096.55531 0.62673 0.00034425 -0.14182 -7.79E-05 0.48491 0.00026635 549.2847715176578 48.038 0.76617 42.804 42.435 43.201 -5.2339 180 46 6 0 0 0 0.0023019 3 29741 29741;29880;30010 106.94 74.635 1 1536099999.9999998 38435 8928 25753 26242 45026;45027;45028 45026 0.010894390976773138 LYADVGGKQF 10 Unmodified _LYADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1097.562377929688 1 1097.56259 1096.55531 0.47928 0.00052604 1.5444 0.001695 2.0236 0.0022211 1097.5646778141395 48.042 0.29942 42.808 42.641 42.94 -5.2339 31 17 3 0 0 0 2.8263E-15 2 29920 29920;29937 168.54 102.08 1 11117000 38436 8928 25753 26242 45029;45030 45029 0.010894390976773138 LYAFKDWQY 9 Unmodified _LYAFKDWQY_ 0 0 0 REV__ENST00000471736.5_1_4:158142110-158255356:+|nuORF;REV__nc|ENSG00000120251|P42262-4|GRIA2 REV__nc|ENSG00000120251|P42262-4|GRIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8702697753906 3 411.86948 1232.58661 -0.13319 -5.4859E-05 1.1434 0.00047094 1.0102 0.00041608 411.869617958073 16.997 0.12204 17.002 16.933 17.055 0.0050564 19 12 2 0 0 0 0.61256 1 8561 8561 0.26902 0.033176 1 392120 + 38437 27501;29602 25754 26243 45031 45031 -0.020379878682433628 LYAHFRRLDY 10 Unmodified _LYAHFRRLDY_ 0 0 0 ENSG00000142544|ENST00000421832|CTU1 ENSG00000142544|ENST00000421832|CTU1 ENSG00000142544|ENST00000421832|CTU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.9080505371094 3 451.906928 1352.69895 -0.64542 -0.00029167 0.87139 0.00039379 0.22598 0.00010212 451.9073411567538 17.008 0.089357 17.009 16.96 17.05 0.0010548 56 23 3 0 0 0 0.7191 1 8408 8408 0.77653 0.27058 1 2579600 38438 5425 25755 26244 45032 45032 0.03671285928612633 LYAHTIAGF 9 Unmodified _LYAHTIAGF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7633361816406 2 496.763635 991.512717 0.52194 0.00025928 -2.618 -0.0013005 -2.0961 -0.0010413 496.7621499578002 52.085 0.37803 51.651 51.531 51.909 -0.43367 41 18 3 0 0 0 0.023164 1 28123 28123 60.39 26.287 1 3596800 38439 16035 25756 26245 45033 45033 0.016620887600993228 LYAHTIAGF 9 Unmodified _LYAHTIAGF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.763916015625 2 496.763635 991.512717 0.21396 0.00010629 0.50067 0.00024871 0.71463 0.000355 496.76398612893985 51.758 0.26085 51.699 51.553 51.814 -0.058918 27 12 3 0 0 0 0.045537 1 28055 28055 46.921 12.818 1 2987900 38440 16035 25756 26245 45034 45034 0.016620887600993228 LYAIEETEGFG 11 Unmodified _LYAIEETEGFG_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2 nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.1950378417969 3 410.195921 1227.56593 -0.18903 -7.7538E-05 -1.9695 -0.0008079 -2.1586 -0.00088543 410.1952972412727 52.326 0.26792 52.326 52.175 52.443 0 33 11 4 0 0 0 0.56638 1 28922 28922 7.0371 1.9896 1 3860800 38441 10084 25757 26246 45035 45035 -0.038746230385640956 LYALQQQR 8 Unmodified _LYALQQQR_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MSMS AL20221201_MKP_PDAC_01 4 510.2834777832031 2 510.285266 1018.55598 NaN NaN NaN NaN NaN NaN NaN 23.136 1 20.358 19.858 20.858 -2.7784 0 0 0 0.26291 1 12500 12500 67.035 0 1 38442 10862 25758 26247 45036 45036 0.04744278537373248 LYALYDQFYV 10 Unmodified _LYALYDQFYV_ 0 0 0 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.8209228515625 2 647.821347 1293.62814 0.67613 0.00043801 -2.619 -0.0016967 -1.9429 -0.0012586 647.8197390607702 54.429 0.26175 54.429 54.291 54.553 0 19 11 2 0 0 0 0.44373 1 30217 30217 19.257 1.1106 1 2714500 38443 4036 25759 26248 45037 45037 -0.006928518995891864 LYAMARNAPL 10 Unmodified _LYAMARNAPL_ 0 0 0 REV__ENSG00000005175|ENST00000005386|RPAP3 REV__ENSG00000005175|ENST00000005386|RPAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3020629882812 2 560.302601 1118.59065 0.84633 0.0004742 -2.6683 -0.001495 -1.822 -0.0010208 560.3017110355578 40.554 0.22622 40.559 40.424 40.65 0.0050545 20 10 3 0 0 0 0.1899 1 21616 21616 34.102 5.0209 1 2327700 + 38444 16963 25760 26249 45038 45038 0.03609778353825277 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(76)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7916870117188 2 586.792066 1171.56958 0.27839 0.00016335 0.655 0.00038435 0.93338 0.0005477 586.7921611125726 51.614 0.36553 51.614 51.412 51.777 0 43 16 4 0 0 0 0.011671 1 28481 28481 75.761 39.634 1 9004200 38445 275 25761 26250 45039 45039 24 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(58)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.792724609375 2 586.792066 1171.56958 0.45257 0.00026556 -0.0067842 -3.9809E-06 0.44579 0.00026158 586.7921940013633 52.149 0.37889 51.715 51.512 51.891 -0.43367 74 18 5 0 0 0 0.025842 2 28194 28093;28194 57.722 27.085 1 70920000 38446 275 25761 26250 45040;45041 45041 24 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(58)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.79296875 2 586.792066 1171.56958 0.38556 0.00022624 -0.71179 -0.00041767 -0.32623 -0.00019143 586.7919382534791 52.619 0.4716 52.186 51.985 52.456 -0.43367 83 23 6 0 0 0 0.025842 2 28383 28383;28485 57.722 28.64 1 80622000 38447 275 25761 26250 45042;45043 45042 24 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(54)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.79296875 2 586.792066 1171.56958 0.35491 0.00020826 -0.14367 -8.4307E-05 0.21123 0.00012395 586.7921695776769 51.8 0.32307 51.742 51.573 51.896 -0.058918 62 15 5 0 0 0 0.032796 1 28008 28008 53.833 17.706 1 48542000 38448 275 25761 26250 45044 45044 24 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(50)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.792236328125 2 586.792066 1171.56958 0.83651 0.00049085 -0.93225 -0.00054704 -0.095748 -5.6184E-05 586.7916652445838 52.315 0.33923 52.257 52.087 52.426 -0.058918 56 16 5 0 0 0 0.040683 1 28308 28308 49.554 20.473 1 53115000 38449 275 25761 26250 45045 45045 24 -0.009342317456912497 LYANMFERL 9 Oxidation (M) _LYANM(Oxidation (M))FERL_ LYANM(1)FERL LYANM(76)FERL 0 0 1 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7923583984375 2 586.792066 1171.56958 0.9347 0.00054847 -0.7712 -0.00045254 0.16349 9.5937E-05 586.7918277190845 57.557 0.42323 51.529 51.294 51.717 -6.0275 70 22 4 0 0 0 0.011671 2 36714 36714;36839 75.761 42.331 1 133660000 38450 275 25761 26250 45046;45047 45046 24 -0.009342317456912497 LYANMFERL 9 Unmodified _LYANMFERL_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7904052734375 2 578.794609 1155.57467 0.60489 0.00035011 -4 -0.0023152 -3.3951 -0.0019651 578.7927763298464 67.594 0.47453 67.612 67.375 67.849 0.018028 68 23 4 0 0 0 0.062454 2 37046 37046;37151 41.956 13.782 1 43310000 38451 275 25761 26251 45048;45049 45048 0.003100721169175813 LYANMFERL 9 Unmodified _LYANMFERL_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7908325195312 2 578.794609 1155.57467 0.19772 0.00011444 -3.7607 -0.0021767 -3.563 -0.0020622 579.2942445288528 78.552 0.097298 72.376 72.324 72.422 -6.1757 9 6 2 0 0 0 0.01958 1 51453 51453 63.961 25.785 1 10126000 38452 275 25761 26251 45050 45050 0.003100721169175813 LYAPGRYGPY 10 Unmodified _LYAPGRYGPY_ 0 0 0 REV__QRICH2|p.G1117A|1|0.04|ENSG00000129646|chr17:76287848-76287848|C/G|missense_variant REV__QRICH2|p.G1117A|1|0.04|ENSG00000129646|chr17:76287848-76287848|C/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.794921875 2 578.792924 1155.57129 1.2284 0.00071101 -1.916 -0.001109 -0.68755 -0.00039795 578.7920741267586 79.628 1.9471 73.452 72.422 74.369 -6.1757 347 114 5 0 0 0 0.13184 3 52509 52115;52379;52509 42.095 13.608 1 192730000 + 38453 30083 25762 26252 45051;45052;45053 45053 -0.0002685466542970971 LYAPYSTHF 9 Unmodified _LYAPYSTHF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7634887695312 2 549.766374 1097.5182 0.35878 0.00019725 -0.16663 -9.161E-05 0.19215 0.00010564 549.7658125842994 50.347 0.22398 50.347 50.209 50.433 0 18 9 2 0 0 0 0.016184 2 27728 27728;27788 67.344 29.193 1 4555400 38454 481 25763 26253 45054;45055 45054 -0.0266623244810944 LYAPYSTHF 9 Unmodified _LYAPYSTHF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.765625 2 549.766374 1097.5182 0.49277 0.00027091 0.0083856 4.6101E-06 0.50116 0.00027552 549.7662998667471 50.883 0.56639 50.47 50.192 50.758 -0.41351 86 27 5 0 0 0 0.010877 2 27357 27357;27459 77.984 39.833 1 142050000 38455 481 25763 26253 45056;45057 45056 -0.0266623244810944 LYAPYSTHF 9 Unmodified _LYAPYSTHF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7666625976562 2 549.766374 1097.5182 1.0168 0.00055902 -0.031174 -1.7139E-05 0.98565 0.00054188 549.7662969514577 50.514 0.3829 50.461 50.266 50.648 -0.053871 67 18 5 0 0 0 0.0086179 2 27274 27274;27373 89.427 47.76 1 59429000 38456 481 25763 26253 45058;45059 45058 -0.0266623244810944 LYAPYSTHF 9 Unmodified _LYAPYSTHF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7650146484375 2 549.766374 1097.5182 0.59177 0.00032534 -0.15256 -8.387E-05 0.43921 0.00024147 549.7662104711812 56.606 0.6712 50.629 50.286 50.957 -5.9769 158 38 6 0 0 0 0.010877 3 36003 36003;36133;36262 77.984 39.833 1 909320000 38457 481 25763 26253 45060;45061;45062 45060 -0.0266623244810944 LYAQDFALL 9 Unmodified _LYAQDFALL_ 0 0 0 REV__ENST00000465407.5_1_10:46135230-46135753:-|nuORF REV__ENST00000465407.5_1_10:46135230-46135753:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.282958984375 2 527.2844 1052.55425 1.1271 0.00059431 -0.85376 -0.00045018 0.27334 0.00014413 527.2838846583959 86.175 1.0699 79.999 79.327 80.397 -6.1757 132 59 3 0 0 0 0.25681 1 56693 56693 19.257 0 1 91291000 + 38458 27391 25764 26254 45063 45063 0.030072247287534992 LYAQHLPYL 9 Unmodified _LYAQHLPYL_ 0 0 0 REV__nc|ENSG00000164164|Q01804-5|OTUD4 REV__nc|ENSG00000164164|Q01804-5|OTUD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3069458007812 2 559.305667 1116.59678 1.2431 0.00069529 -0.60214 -0.00033678 0.64099 0.00035851 559.305487202704 61.142 0.42217 54.995 54.793 55.215 -6.1478 34 21 2 0 0 0 0.087258 1 39346 39346 36.044 7.5574 1 33840000 + 38459 21882 25765 26255 45064 45064 0.04314619856972968 LYAQLVQQRF 10 Unmodified _LYAQLVQQRF_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.3529663085938 2 633.35368 1264.69281 -0.47237 -0.00029918 -0.049639 -3.1439E-05 -0.52201 -0.00033062 633.3536022442363 56.011 0.19763 55.942 55.839 56.036 -0.068737 18 10 2 0 0 0 0.0032765 1 30434 30434 103.75 78.349 1 3432100 38460 3667 25766 26256 45065 45065 0.07104767697069292 LYAQVKQKM 9 Unmodified _LYAQVKQKM_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2110290527344 3 370.21096 1107.61105 0.45107 0.00016699 0.35806 0.00013256 0.80913 0.00029955 370.211311647281 25.782 0.33246 22.831 22.594 22.926 -2.9511 29 20 2 0 0 0 0.23158 2 14155 14048;14155 24.991 12.75 1 13496000 38461 7457 25767 26257 45066;45067 45067 0.0615494901362581 LYARRPCLL 9 Unmodified _LYARRPCLL_ 0 0 0 REV__ENST00000593129.1_1_19:45988968-45992276:-|nuORF REV__ENST00000593129.1_1_19:45988968-45992276:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7776489257812 2 552.820961 1103.62737 0.49524 0.00027378 3.5823 0.0019804 4.0775 0.0022541 552.8224690928938 59.034 0.24641 58.974 58.88 59.127 -0.060719 17 11 2 0 0 0 0.16785 1 32137 32137 23.148 0 1 1590400 + 38462 29189 25768 26258 45068 45068 0.07970074970398855 LYASVVLVI 9 Unmodified _LYASVVLVI_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5-3|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.607666015625 1 976.607746 975.600469 0.7612 0.0007434 -0.28728 -0.00028056 0.47392 0.00046284 976.6072734452607 100.48 0.13208 94.302 94.228 94.36 -6.1757 13 7 2 0 0 0 0.0086179 1 67179 67179 89.427 0 1 59348000 38463 6354 25769 26259 45069 45069 0.11169289630845469 LYATSLPSF 9 Unmodified _LYATSLPSF_ 0 0 0 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7634582519531 2 499.7633 997.512048 0.52874 0.00026424 -0.61023 -0.00030497 -0.08149 -4.0726E-05 499.763398933235 74.419 0.26955 73.944 73.817 74.087 -0.47588 19 11 2 0 0 0 0.39863 1 40750 40750 12.532 2.3482 1 660800 38464 1744 25770 26260 45070 45070 0.01319249320374638 LYATSLPSF 9 Unmodified _LYATSLPSF_ 0 0 0 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 998.5153198242188 1 998.519325 997.512048 0.64054 0.0006396 -0.98127 -0.00097982 -0.34072 -0.00034022 998.5173948934334 73.93 0.18665 73.974 73.864 74.05 0.043983 10 8 2 0 0 0 0.06187 1 40750 40750 42.095 17.421 1 1274800 38465 1744 25770 26260 45071 45071 0.01319249320374638 LYATSLPSF 9 Unmodified _LYATSLPSF_ 0 0 0 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7644653320312 2 499.7633 997.512048 0.91413 0.00045685 0.26116 0.00013052 1.1753 0.00058737 499.76340967904565 81.898 0.38644 75.723 75.514 75.9 -6.1757 35 21 2 0 0 0 0.019979 1 53731 53731 63.563 21.468 1 15237000 38466 1744 25770 26260 45072 45072 0.01319249320374638 LYATSLPSF 9 Unmodified _LYATSLPSF_ 0 0 0 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 ENSG00000100036|ENST00000343605|SLC35E4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.7633 997.512048 0.34902 0.00017443 -0.54689 -0.00027332 -0.19787 -9.8889E-05 499.7630785226981 73.895 0.23066 73.939 73.843 74.074 0.043976 -0.002174 2.001E-05 NaN 12.532 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1146400 38467 1744 25770 26260 0.01319249320374638 LYCCEKWI 8 Unmodified _LYCCEKWI_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1686706542969 3 353.166363 1056.47726 0.094625 3.3418E-05 2.8375 0.0010021 2.9321 0.0010355 353.5010466969101 85.104 0.43919 85.104 84.829 85.269 0 44 23 2 0 0 0 0.80044 1 47076 47076 4.3292 2.485 1 2033400 38468 763;12747 25771 26261 45073 45073 -0.04872033083574934 LYCCEKWI 8 Unmodified _LYCCEKWI_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5003356933594 3 353.166363 1056.47726 0.46419 0.00016394 0.30316 0.00010706 0.76735 0.000271 353.50038863759863 85.424 0.58309 84.923 84.715 85.298 -0.5015 137 47 3 0 0 0 0.80232 1 46906 46906 3.5965 0 1 10220000 38469 763;12747 25771 26261 45074 45074 -0.04872033083574934 LYCCFERVCLF 11 Unmodified _LYCCFERVCLF_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.3140258789062 2 698.316537 1394.61852 NaN NaN NaN NaN NaN NaN NaN 67.245 1 66.763 66.263 67.263 -0.48218 0 0 0 0.85601 1 36735 36735 9.3831 0.63772 1 38470 4910 25772 26262 45075 45075 -0.06300402772603775 LYCDLLLARF 10 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))DLLLARF_ LYC(1)DLLLARF LYC(130)DLLLARF 0 1 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3447265625 2 642.344466 1282.67438 1.3295 0.00085398 -0.33244 -0.00021354 0.99703 0.00064043 642.344034488231 98.331 0.14875 92.155 92.072 92.221 -6.1757 21 9 3 0 0 0 6.7445E-07 1 65204 65204 133.05 107.65 1 44643000 38471 9022;15094 25773 26263 45076 45076 847 0.04434889730850955 LYCELCYEKF 10 2 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))ELC(Carbamidomethyl (C))YEKF_ LYC(1)ELC(1)YEKF LYC(110)ELC(110)YEKF 0 2 0 ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.8153076171875 2 712.814881 1423.61521 1.7322 0.0012347 -0.34355 -0.00024489 1.3886 0.00098984 712.8147233371924 62.769 0.60153 56.594 56.362 56.964 -6.1757 78 30 3 0 0 0 0.00089362 3 40460 40460;40596;40768 114.19 93.772 1 36415000 38472 6952 25774 26264 45077;45078;45079 45077 681;682 -0.07965374345621967 LYCGEVFMWF 10 Unmodified _LYCGEVFMWF_ 0 0 0 REV__nc|ENSG00000106113|Q13324-3|CRHR2 REV__nc|ENSG00000106113|Q13324-3|CRHR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.1927490234375 3 432.192689 1293.55624 0.49113 0.00021226 1.3283 0.00057406 1.8194 0.00078632 432.5272799050568 49.132 0.19392 49.088 48.982 49.175 -0.04369 18 8 3 0 0 0 0.70951 1 26567 26567 0.77653 0 1 1690300 + 38473 18491 25775 26265 45080 45080 -0.07879805849324839 LYCGKTLLF 9 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))GKTLLF_ LYC(1)GKTLLF LYC(80)GKTLLF 0 1 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.80322265625 2 557.801903 1113.58925 1.2931 0.00072129 -0.48659 -0.00027142 0.80651 0.00044987 557.8017330296154 63.994 0.43147 63.984 63.783 64.214 -0.010532 80 21 5 0 0 0 0.010301 2 34958 34958;35059 79.596 16.524 1 103900000 38474 718 25776 26266 45081;45082 45081 54 0.037001442650534955 LYCGKTLLF 9 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))GKTLLF_ LYC(1)GKTLLF LYC(110)GKTLLF 0 1 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8038330078125 2 557.801903 1113.58925 1.14 0.00063592 -0.16042 -8.9484E-05 0.97962 0.00054643 557.8020483991294 69.023 0.72501 62.848 62.518 63.243 -6.1757 115 39 4 0 0 0 0.0074135 3 44928 44928;45042;45163 110.67 42.594 1 325800000 38475 718 25776 26266 45083;45084;45085 45083 54 0.037001442650534955 LYCGKTLLF 9 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))GKTLLF_ LYC(1)GKTLLF LYC(70)GKTLLF 0 1 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8031005859375 2 557.801903 1113.58925 1.2617 0.00070376 0.41455 0.00023124 1.6762 0.000935 557.802028941561 71.192 0.79063 65.017 64.628 65.419 -6.1757 68 39 2 0 0 0 0.013609 2 46598 46481;46598 70.332 28.515 1 38733000 38476 718 25776 26266 45086;45087 45087 54 0.037001442650534955 LYCGKYEIT 9 Unmodified _LYCGKYEIT_ 0 0 0 REV__ENSG00000135090|ENST00000392533|TAOK3 REV__ENSG00000135090|ENST00000392533|TAOK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.792236328125 2 545.267893 1088.52123 0.95324 0.00051977 0.32348 0.00017638 1.2767 0.00069616 545.7694547040451 66.048 0.16933 66.058 65.932 66.101 0.0095596 11 8 2 0 0 0 0.209 1 36227 36227 7.2892 0.93513 1 1753000 + 38477 20038 25777 26267 45088 45088 -0.01948725385614125 LYCHSDHSLF 10 Unmodified _LYCHSDHSLF_ 0 0 0 ENST00000468090.5_1_21:45176243-45176483:+|nuORF ENST00000468090.5_1_21:45176243-45176483:+|nuORF ENST00000468090.5_1_21:45176243-45176483:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 610.8314208984375 2 611.271498 1220.52844 NaN NaN NaN NaN NaN NaN NaN 100.99 1 94.815 94.315 95.315 -6.1757 0 0 0 0.69334 1 67674 67674 16.942 7.5949 1 38478 13797 25778 26268 45089 45089 -0.07299992785192444 LYCIQCPMD 9 Unmodified _LYCIQCPMD_ 0 0 0 REV__ENSG00000166233|ENST00000379887|ARIH1 REV__ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2273559570312 2 543.226856 1084.43916 0.8554 0.00046468 1.5565 0.00084552 2.4119 0.0013102 543.2273700262224 49.751 0.45438 44.212 43.985 44.439 -5.5391 92 28 4 0 0 0 0.48152 1 31015 31015 8.5933 2.8329 1 103870000 + 38479 22096 25779 26269 45090 45090 -0.09968287060564762 LYCKMANLLQF 11 Unmodified _LYCKMANLLQF_ 0 0 0 ENST00000367771.10_1_1:169847953-169857917:-|nuORF ENST00000367771.10_1_1:169847953-169857917:-|nuORF ENST00000367771.10_1_1:169847953-169857917:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.3440551757812 2 672.346151 1342.67775 0.36204 0.00024341 -1.1914 -0.00080104 -0.82937 -0.00055762 672.3457110238896 67.121 0.29863 66.638 66.481 66.78 -0.48253 31 13 3 0 0 0 0.68427 1 36745 36745 5.7319 0 1 5703900 38480 12249 25780 26270 45091 45091 0.020118165132089416 LYCNDCYLRF 10 2 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))NDC(Carbamidomethyl (C))YLRF_ LYC(1)NDC(1)YLRF LYC(96)NDC(96)YLRF 0 2 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.3096923828125 2 712.310297 1422.60604 0.41662 0.00029676 -0.37426 -0.00026659 0.042353 3.0169E-05 712.3105425258275 65.921 0.78948 59.745 59.525 60.315 -6.1757 104 45 3 0 0 0 0.0057332 3 42892 42750;42892;43037 96.367 73.63 1 38715000 38481 4794 25781 26271 45092;45093;45094 45093 487;488 -0.08835722911317134 LYCNDCYLRF 10 2 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))NDC(Carbamidomethyl (C))YLRF_ LYC(1)NDC(1)YLRF LYC(64)NDC(64)YLRF 0 2 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.810546875 2 712.310297 1422.60604 0.22974 0.00016365 -0.0093032 -6.6267E-06 0.22044 0.00015702 712.3105277324473 66.625 0.42004 60.449 60.261 60.681 -6.1757 36 23 2 0 0 0 0.038363 1 43412 43412 63.961 38.561 1 10437000 38482 4794 25781 26271 45095 45095 487;488 -0.08835722911317134 LYCRVFLL 8 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))RVFLL_ LYC(1)RVFLL LYC(60)RVFLL 0 1 0 nc|ENSG00000095203|Q9H329-2|EPB41L4B;ENSG00000095203|ENST00000374566|EPB41L4B nc|ENSG00000095203|Q9H329-2|EPB41L4B nc|ENSG00000095203|Q9H329-2|EPB41L4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3040771484375 2 542.304613 1082.59467 1.1663 0.00063248 -0.48112 -0.00026092 0.68515 0.00037156 542.3044749114209 95.544 0.41949 89.369 89.089 89.508 -6.1757 40 24 2 0 0 0 0.26159 2 63178 63178;63306 60.39 26.202 1 19347000 38483 1646 25782 26272 45096;45097 45096 159 0.05667867847546404 LYCTPDTVNI 10 Unmodified _LYCTPDTVNI_ 0 0 0 ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF ENST00000324856.11_1_1:27107705-27107861:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 569.7752075195312 2 569.776082 1137.53761 NaN NaN NaN NaN NaN NaN NaN 90.964 1 84.789 84.289 85.289 -6.1757 0 0 0 0.71851 1 60116 60116 15.847 2.3393 1 38484 11805 25783 26273 45098 45098 -0.025656442194986084 LYCTVTENF 9 Carbamidomethyl (C) _LYC(Carbamidomethyl (C))TVTENF_ LYC(1)TVTENF LYC(78)TVTENF 0 1 0 ENST00000370207.4_1_1:94995956-94995989:-|nuORF ENST00000370207.4_1_1:94995956-94995989:-|nuORF ENST00000370207.4_1_1:94995956-94995989:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2628784179688 2 573.760432 1145.50631 0.77042 0.00044203 0.81665 0.00046856 1.5871 0.00091059 573.7606454901545 62.273 0.35961 56.097 55.905 56.265 -6.1757 41 20 3 0 0 0 0.010877 2 40080 40080;40213 77.984 62.137 1 33113000 38485 12324 25784 26274 45099;45100 45099 976 -0.06062217253634117 LYCVYALL 8 Unmodified _LYCVYALL_ 0 0 0 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 MSMS AL20221201_MKP_PDAC_01 4 479.2603454589844 2 479.259339 956.504126 NaN NaN NaN NaN NaN NaN NaN 73.696 1 67.52 67.02 68.02 -6.1757 0 0 0 0.94749 1 48187 48187 11.114 0.29054 1 + 38486 16815 25785 26275 45101 45101 0.024133987992627226 LYCWDKWLW 9 Unmodified _LYCWDKWLW_ 0 0 0 REV__ENST00000359785.9_1_1:114397123-114397534:-|nuORF REV__ENST00000359785.9_1_1:114397123-114397534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3132934570312 2 656.812802 1311.61105 0.069941 4.5938E-05 -4.3007 -0.0028248 -4.2308 -0.0027788 657.3117559682609 99.827 0.16254 93.651 93.541 93.703 -6.1757 19 11 2 0 0 0 0.08691 1 66593 66593 36.127 9.2434 1 27267000 + 38487 25898 25786 26276 45102 45102 -0.032290509863742045 LYDAEIHL 8 Unmodified _LYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2531433105469 2 487.2531 972.491647 -0.50069 -0.00024396 0.44545 0.00021705 -0.055231 -2.6912E-05 487.2533056054142 55.414 0.33137 55.414 55.241 55.573 0 34 14 3 0 0 0 0.24071 2 30734 30734;30840 63.563 13.894 1 5647600 38488 7155 25787 26277 45103;45104 45103 0.004300786605767826 LYDAEIHL 8 Unmodified _LYDAEIHL_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2536926269531 2 487.2531 972.491647 0.59973 0.00029222 0.3513 0.00017117 0.95103 0.00046339 487.2528583015877 61.961 0.27779 55.785 55.597 55.875 -6.1757 19 14 2 0 0 0 0.17035 1 39941 39941 81.864 22.069 1 13845000 38489 7155 25787 26277 45105 45105 0.004300786605767826 LYDCTEVSPY 10 Unmodified _LYDCTEVSPY_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENST00000477549.1_1_3:153994520-153995479:-|nuORF nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1746520996094 3 397.17424 1188.50089 0.27462 0.00010907 0.26914 0.00010689 0.54375 0.00021596 397.17421721843124 54.126 0.3761 53.66 53.446 53.822 -0.46664 41 18 3 0 0 0 0.67033 1 29296 29296 3.3196 0 1 3427800 38490 8474 25788 26278 45106 45106 -0.08581940836052127 LYDDYEYI 8 Unmodified _LYDDYEYI_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1616516113281 3 365.162329 1092.46516 0.0025658 9.3693E-07 -3.6096 -0.0013181 -3.607 -0.0013171 365.16131630449803 62.309 0.24298 62.309 62.122 62.365 0 29 13 3 0 0 0 0.79887 1 34705 34705 7.2892 2.96 1 3930900 38491 3785 25789 26279 45107 45107 -0.07737655021446699 LYDDYEYI 8 Unmodified _LYDDYEYI_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1617736816406 3 365.162329 1092.46516 0.52593 0.00019205 -4.1874 -0.0015291 -3.6614 -0.001337 365.16158130653747 62.788 0.26038 62.302 62.162 62.423 -0.48617 30 12 3 0 0 0 0.79887 1 34199 34199 7.2892 2.96 1 5566500 38492 3785 25789 26279 45108 45108 -0.07737655021446699 LYDEAIRHF 9 Unmodified _LYDEAIRHF_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5331115722656 3 388.532979 1162.57711 0.10245 3.9804E-05 0.23576 9.1601E-05 0.33821 0.00013141 388.53293174476704 41.239 0.25204 40.936 40.776 41.028 -0.30304 31 11 4 0 0 0 0.094149 1 21839 21839 32.037 19.797 1 10722000 38493 5541 25790 26280 45109 45109 0.002322438462442733 LYDEAIRHF 9 Unmodified _LYDEAIRHF_ 0 0 0 nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 nc|ENSG00000143643|Q8NBP0-2|TTC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5340270996094 3 388.532979 1162.57711 0.94828 0.00036844 0.60591 0.00023542 1.5542 0.00060385 388.5333603089907 46.101 0.36123 41.146 40.922 41.284 -4.9549 54 23 3 0 0 0 0.094149 1 28376 28376 26.021 18.412 1 25759000 38494 5541 25790 26280 45110 45110 0.002322438462442733 LYDEIKKY 8 Unmodified _LYDEIKKY_ 0 0 0 ENSG00000005022|ENST00000317881|SLC25A5;ENST00000463551.1_1_X:118604271-118605018:+|nuORF;ENSG00000151729|ENST00000281456|SLC25A4;ENST00000491736.1_1_4:186066902-186068122:+|nuORF ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2909545898438 2 536.289682 1070.56481 1.303 0.00069876 1.8307 0.00098176 3.1336 0.0016805 536.2907507683798 63.999 0.72025 57.823 57.595 58.315 -6.1757 79 38 3 0 0 0 0.55032 1 41580 41580 30.225 1.738 1 54247000 38495 295 25791 26281 45111 45111 0.0323520738318166 LYDERSVDKV 10 Unmodified _LYDERSVDKV_ 0 0 0 ENST00000429685.1_1_2:203044091-203044292:+|nuORF ENST00000429685.1_1_2:203044091-203044292:+|nuORF ENST00000429685.1_1_2:203044091-203044292:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.3193969726562 2 612.31696 1222.61937 0.65689 0.00040223 0.37857 0.00023181 1.0355 0.00063403 612.3170851337688 52.33 0.19405 51.896 51.77 51.964 -0.43367 22 9 3 0 0 0 0.40136 1 28260 28260 21.537 0 1 1930600 38496 13220 25792 26282 45112 45112 0.016961744639502285 LYDFIHTSF 9 Unmodified _LYDFIHTSF_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7789306640625 2 571.779482 1141.54441 0.12463 7.126E-05 -1.0699 -0.00061172 -0.94523 -0.00054046 571.7786124043594 73.086 0.22161 73.128 73.048 73.27 0.041733 17 10 2 0 0 0 0.0083087 1 40276 40276 97.075 62.972 1 4336700 38497 8532 25793 26283 45113 45113 -0.02069963276630915 LYDFVKTERDE 11 Unmodified _LYDFVKTERDE_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.8489379882812 2 707.846081 1413.67761 0.12547 8.8811E-05 -0.32781 -0.00023204 -0.20234 -0.00014323 707.8454848029628 59.317 0.3422 59.317 59.123 59.465 0 40 14 4 0 0 0 0.33405 1 33002 33002 24.991 0 1 24736000 38498 7815 25794 26284 45114 45114 -0.012681886814107202 LYDFVKTERDE 11 Unmodified _LYDFVKTERDE_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.8457641601562 2 707.846081 1413.67761 0.11772 8.3325E-05 -0.067504 -4.7782E-05 0.050213 3.5543E-05 707.8459237172046 59.911 0.45966 59.42 59.193 59.652 -0.49079 91 22 6 0 0 0 0.33405 1 32632 32632 24.991 5.629 1 224840000 38499 7815 25794 26284 45115 45115 -0.012681886814107202 LYDFVKTERDE 11 Unmodified _LYDFVKTERDE_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.845947265625 2 707.846081 1413.67761 0.41272 0.00029214 0.01211 8.5721E-06 0.42483 0.00030071 707.8460078503634 59.531 0.36195 59.478 59.293 59.655 -0.053062 58 18 4 0 0 0 0.13715 1 32385 32385 38.176 8.335 1 36608000 38500 7815 25794 26284 45116 45116 -0.012681886814107202 LYDFVKTERDE 11 Unmodified _LYDFVKTERDE_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.8460083007812 2 707.846081 1413.67761 0.48749 0.00034507 0.12149 8.5994E-05 0.60898 0.00043106 707.8460816550099 66.114 0.73275 59.938 59.709 60.441 -6.1757 123 41 4 0 0 0 0.21511 3 43124 42860;42990;43124 31.268 1.4278 1 91130000 38501 7815 25794 26284 45117;45118;45119 45119 -0.012681886814107202 LYDFVKTERDE 11 Unmodified _LYDFVKTERDE_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 707.846081 1413.67761 0.12547 8.8811E-05 -0.32781 -0.00023204 -0.20234 -0.00014323 707.8454848029628 59.317 0.3422 59.317 59.123 59.465 0 -0.088303 -0.00032895 NaN 38.176 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 24736000 38502 7815 25794 26284 -0.012681886814107202 LYDHDTYGAD 10 Unmodified _LYDHDTYGAD_ 0 0 0 nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF nc|ENSG00000135636|O75923-15|DYSF nc|ENSG00000135636|O75923-15|DYSF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7444458007812 2 585.240918 1168.46728 0.91384 0.00053481 -1.4387 -0.00084196 -0.52482 -0.00030714 585.2402347414202 99.257 0.42277 93.081 92.957 93.38 -6.1757 112 26 6 0 0 0 0.60623 1 66122 66122 10.824 0 1 168690000 38503 4728 25795 26285 45120 45120 -0.11021226283605756 LYDHTTILF 9 Unmodified _LYDHTTILF_ 0 0 0 ENSG00000067365|ENST00000381920|METTL22;ENST00000561993.5_1_16:8732964-8736423:+|nuORF;ENST00000565866.5_1_16:8735295-8739997:+|nuORF;nc|ENSG00000067365|Q9BUU2-3|METTL22 ENSG00000067365|ENST00000381920|METTL22 ENSG00000067365|ENST00000381920|METTL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.796142578125 2 561.795132 1121.57571 0.68579 0.00038527 2.0962 0.0011776 2.782 0.0015629 561.7967287465888 67.512 0.34202 67.03 66.866 67.208 -0.48218 31 14 3 0 0 0 0.10247 1 36872 36872 44.407 17.523 1 3696900 38504 957 25796 26286 45121 45121 0.01978609757452432 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8296508789062 2 569.828975 1137.6434 1.1187 0.00063744 0.43147 0.00024586 1.5501 0.0008833 569.8293285504352 79.99 0.33466 79.501 79.354 79.689 -0.48933 34 12 4 0 0 0 0.013118 1 43839 43839 88.954 36.686 1 3696100 38505 1599 25797 26287 45122 45122 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8296508789062 2 569.828975 1137.6434 0.31754 0.00018095 0.24864 0.00014168 0.56618 0.00032263 569.829003738441 79.425 0.59258 79.48 79.257 79.849 0.05497 88 22 6 0 0 0 0.0074582 3 43809 43809;43921;44036 136.33 54.72 1 357590000 38506 1599 25797 26287 45123;45124;45125 45123 0.08008059688290814 LYDIILKNF 9 Unmodified _LYDIILKNF_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8299560546875 2 569.828975 1137.6434 1.4829 0.00084503 -0.0088617 -5.0497E-06 1.4741 0.00083998 569.8289324769953 95.788 0.77299 89.613 89.12 89.893 -6.1757 186 46 5 0 0 0 0.0085366 3 63487 63238;63361;63487 111.29 58.064 1 700290000 38507 1599 25797 26287 45126;45127;45128 45128 0.08008059688290814 LYDILQLMN 9 Unmodified _LYDILQLMN_ 0 0 0 REV__ENST00000345990.8_2_5:122881200-122881245:+|nuORF REV__ENST00000345990.8_2_5:122881200-122881245:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7996826171875 2 561.796817 1121.57908 1.2964 0.00072833 1.867 0.0010488 3.1634 0.0017772 561.7979239412597 94.666 0.52893 88.49 88.219 88.748 -6.1757 51 30 2 0 0 0 0.30562 1 62648 62648 16.942 2.104 1 22142000 + 38508 25758 25798 26288 45129 45129 0.023155365398451977 LYDIVFKHF 9 Unmodified _LYDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5499267578125 3 394.54997 1180.62808 0.84476 0.0003333 -0.39215 -0.00015472 0.45261 0.00017858 394.5497569432418 64.043 0.49245 64.032 63.845 64.338 -0.010529 99 24 6 0 0 0 0.091924 2 34992 34992;35092 34.932 24.133 1 240040000 38509 16042 25799 26289 45130;45131 45130 0.04499192891103121 LYDIVFKHF 9 Unmodified _LYDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3211059570312 2 591.321317 1180.62808 0.88805 0.00052512 0.90043 0.00053245 1.7885 0.0010576 591.3217796738414 64.066 0.45797 64.055 63.9 64.358 -0.010536 70 22 4 0 0 0 0.033587 2 35014 35014;35116 49.933 30.676 1 36702000 38510 16042 25799 26289 45132;45133 45132 0.04499192891103121 LYDIVFKHF 9 Unmodified _LYDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5506896972656 3 394.54997 1180.62808 1.4378 0.00056727 -0.25051 -9.884E-05 1.1873 0.00046843 394.54991172289516 86.619 0.75804 80.443 79.957 80.715 -6.1757 132 40 4 0 0 0 0.062454 4 56853 56853;56984;57105;57232 41.956 26.707 1 255870000 38511 16042 25799 26289 45134;45135;45136;45137 45134 0.04499192891103121 LYDIVFKHF 9 Unmodified _LYDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3218994140625 2 591.321317 1180.62808 1.0897 0.00064436 -0.77611 -0.00045893 0.3136 0.00018544 591.3207800634955 86.619 0.66087 80.444 80.054 80.715 -6.1757 78 35 3 0 0 0 0.033587 2 57170 57045;57170 56.177 32.156 1 54524000 38512 16042 25799 26289 45138;45139 45139 0.04499192891103121 LYDKDHYKL 9 Unmodified _LYDKDHYKL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8765563964844 3 398.876634 1193.60807 -0.52736 -0.00021035 0.080855 3.2251E-05 -0.4465 -0.0001781 398.8766701731479 25.827 0.24934 25.827 25.695 25.945 0 29 11 4 0 0 0 0.060956 1 13251 13251 42.312 21.732 1 3758000 38513 2532 25800 26290 45140 45140 0.019013971604636026 LYDKDHYKL 9 Unmodified _LYDKDHYKL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.8765869140625 3 398.876634 1193.60807 NaN NaN NaN NaN NaN NaN NaN 25.974 1 25.957 25.457 26.457 -0.017006 0 0 0 0.71252 1 13341 13341 8.9762 4.7867 1 38514 2532 25800 26290 45141 45141 0.019013971604636026 LYDKDHYKL 9 Unmodified _LYDKDHYKL_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8765563964844 3 398.876634 1193.60807 0.86735 0.00034597 -0.73908 -0.0002948 0.12827 5.1164E-05 398.8767793260601 28.669 0.43181 25.521 25.246 25.677 -3.1482 50 21 3 0 0 0 0.047194 2 15946 15946;16069 46.022 27.301 1 47034000 38515 2532 25800 26290 45142;45143 45142 0.019013971604636026 LYDKNSKH 8 Unmodified _LYDKNSKH_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.2453308105469 2 502.761623 1003.50869 0.69234 0.00034808 3.3885 0.0017036 4.0808 0.0020517 502.7641708845614 48.086 0.4532 42.852 42.58 43.033 -5.2339 35 27 2 0 0 0 8.7369 1 29905 29905 15.847 0 1 10853000 + 38516 20496 25801 26291 45144 45144 0.007079992663761914 LYDLTNIF 8 Unmodified _LYDLTNIF_ 0 0 0 ENSG00000186591|ENST00000355621|UBE2H ENSG00000186591|ENST00000355621|UBE2H ENSG00000186591|ENST00000355621|UBE2H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7613830566406 2 499.7633 997.512048 NaN NaN NaN NaN NaN NaN NaN 85.279 1 84.778 84.278 85.278 -0.5015 0 0 0 0.97444 1 46660 46660 4.756 0.42677 1 38517 9486 25802 26292 45145 45145 0.01319249320374638 LYDLVTEKM 9 Oxidation (M) _LYDLVTEKM(Oxidation (M))_ LYDLVTEKM(1) LYDLVTEKM(110) 0 0 1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2861328125 2 564.286282 1126.55801 -0.12246 -6.9103E-05 0.89995 0.00050783 0.77749 0.00043873 564.2863958047008 41.817 0.26677 41.51 41.375 41.641 -0.30682 28 12 3 0 0 0 0.0074135 1 22170 22170 110.67 72.701 1 11099000 38518 3536 25803 26293 45146 45146 626 -0.00020473559698075405 LYDLVTEKM 9 Oxidation (M) _LYDLVTEKM(Oxidation (M))_ 0 0 1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 564.286282 1126.55801 -0.23763 -0.00013409 -0.61329 -0.00034607 -0.85092 -0.00048016 564.2859865344619 41.492 0.44976 41.492 41.218 41.668 0 -0.0088994 -0.00081209 NaN 110.67 38 22 3 NaN NaN NaN NaN 0 NaN NaN 0 20413000 38519 3536 25803 26293 626 -0.00020473559698075405 LYDLVTEKM 9 Unmodified _LYDLVTEKM_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MSMS AL20221201_MKP_PDAC_01 4 556.2908935546875 2 556.288825 1110.5631 NaN NaN NaN NaN NaN NaN NaN 60.274 1 54.159 53.659 54.659 -6.1147 0 0 0 0.20976 1 38778 38778 29.841 2.2118 1 38520 3536 25803 26294 45147 45147 0.01223830302933493 LYDNLDVMNT 10 Unmodified _LYDNLDVMNT_ 0 0 0 REV__ENSG00000129083|ENST00000439561|COPB1 REV__ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5220336914062 3 399.85339 1196.53834 0.63541 0.00025407 1.0471 0.00041868 1.6825 0.00067275 399.8540081694607 29.835 0.24377 26.534 26.459 26.703 -3.3016 17 11 2 0 0 0 0.44373 1 16865 16865 12.175 3.7304 1 26332000 + 38521 19648 25804 26295 45148 45148 -0.05206849570458871 LYDNMYVSCIS 11 Unmodified _LYDNMYVSCIS_ 0 0 0 REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF REV__ENST00000473414.5_1_3:149458515-149458710:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8607482910156 3 436.526396 1306.55736 0.69208 0.00030211 -0.45232 -0.00019745 0.23975 0.00010466 436.52642205311594 74.545 0.27734 74.069 73.954 74.231 -0.47588 38 11 4 0 0 0 0.71036 1 40802 40802 1.3296 0.82369 1 1624600 + 38522 27540 25805 26296 45149 45149 -0.08365636271037147 LYDPVISKL 9 Unmodified _LYDPVISKL_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.3082885742188 2 524.307875 1046.6012 0.86694 0.00045455 0.0042719 2.2398E-06 0.87121 0.00045678 524.3078246854948 60.502 0.32454 60.502 60.345 60.67 0 34 14 3 0 0 0 0.033587 1 33746 33746 53.404 25.775 1 4480500 38523 9594 25806 26297 45150 45150 0.07976084279880524 LYDPVISKL 9 Unmodified _LYDPVISKL_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.307861328125 2 524.307875 1046.6012 -0.36448 -0.0001911 0.21889 0.00011476 -0.14559 -7.6335E-05 524.3079133945961 60.977 0.36161 60.487 60.313 60.674 -0.48932 42 17 3 0 0 0 0.021948 2 33266 33166;33266 61.602 27.2 1 39856000 38524 9594 25806 26297 45151;45152 45152 0.07976084279880524 LYDPVISKL 9 Unmodified _LYDPVISKL_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3078002929688 2 524.307875 1046.6012 NaN NaN NaN NaN NaN NaN NaN 60.635 1 60.591 60.091 61.091 -0.04351 0 0 0 0.090869 1 33073 33073 45.74 18.111 1 38525 9594 25806 26297 45153 45153 0.07976084279880524 LYDPVISKL 9 Unmodified _LYDPVISKL_ 0 0 0 nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 nc|ENSG00000187778|Q96EZ8-3|MCRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3084716796875 2 524.307875 1046.6012 0.70072 0.0003674 -1.4101 -0.00073933 -0.70938 -0.00037194 524.307922484991 66.397 1.1173 60.221 59.709 60.826 -6.1757 111 63 2 0 0 0 0.021948 3 43197 43074;43197;43556 61.602 33.973 1 98383000 38526 9594 25806 26297 45154;45155;45156 45155 0.07976084279880524 LYDQLLQSYQQ 11 Unmodified _LYDQLLQSYQQ_ 0 0 0 CON__P17697 CON__P17697 CON__P17697 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.8493041992188 2 699.848624 1397.6827 0.22346 0.00015639 0.30963 0.00021669 0.53309 0.00037308 699.8488018606196 59.545 0.87124 59.054 58.579 59.45 -0.49079 101 41 3 0 0 0 0.37147 1 32449 32449 34.932 18.783 1 3786200 + 38527 172 25807 26298 45157 45157 -0.00023884818779151828 LYDQLLQSYQQ 11 Unmodified _LYDQLLQSYQQ_ 0 0 0 CON__P17697 CON__P17697 CON__P17697 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.8490600585938 2 699.848624 1397.6827 0.53183 0.0003722 0.31843 0.00022285 0.85026 0.00059505 699.8487601505398 64.421 0.74417 63.936 63.572 64.316 -0.48512 77 34 3 0 0 0 0.46197 1 35112 35112 28.495 11.382 1 1817600 + 38528 172 25807 26298 45158 45158 -0.00023884818779151828 LYDQLLQSYQQ 11 Unmodified _LYDQLLQSYQQ_ 0 0 0 CON__P17697 CON__P17697 CON__P17697 MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.3488159179688 2 699.848624 1397.6827 0.11313 7.9176E-05 0.14406 0.00010082 0.25719 0.00018 699.8487282697714 65.768 0.74101 59.592 59.304 60.045 -6.1757 70 43 2 0 0 0 0.12206 1 42745 42745 49.554 15.153 1 21232000 + 38529 172 25807 26298 45159 45159 -0.00023884818779151828 LYDQPLQVF 9 Unmodified _LYDQPLQVF_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7977294921875 2 561.795132 1121.57571 0.66922 0.00037596 3.0451 0.0017107 3.7143 0.0020867 561.7972639877885 86.21 0.51521 85.707 85.343 85.858 -0.50318 46 20 3 0 0 0 0.47846 1 47237 47237 8.5933 0 1 2036300 38530 2925 25808 26299 45160 45160 0.019786097574751693 LYDSYVPIN 9 Unmodified _LYDSYVPIN_ 0 0 0 ENST00000442234.5_1_13:108861346-108861406:-|nuORF ENST00000442234.5_1_13:108861346-108861406:-|nuORF ENST00000442234.5_1_13:108861346-108861406:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3079223632812 2 542.27149 1082.52843 0.24318 0.00013187 -0.032713 -1.7739E-05 0.21047 0.00011413 542.2714665964509 90.466 0.42612 89.971 89.713 90.139 -0.49457 58 19 4 0 0 0 0.19613 1 49403 49403 12.532 0.89125 1 4556600 38531 13406 25809 26300 45161 45161 -0.009536695135011541 LYDTHITVL 9 Unmodified _LYDTHITVL_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7951049804688 2 537.795132 1073.57571 0.40555 0.00021811 0.077356 4.1602E-05 0.48291 0.00025971 537.7949612473752 58.144 0.27812 58.144 58.012 58.29 0 22 10 3 0 0 0 0.038285 1 32381 32381 50.855 22.368 1 2923200 38532 2029;13824 25810 26301 45162 45162 0.04186609757448423 LYDTHITVL 9 Unmodified _LYDTHITVL_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.794921875 2 537.795132 1073.57571 0.15822 8.5092E-05 -0.42896 -0.00023069 -0.27073 -0.0001456 537.7947952994506 58.582 0.24912 58.091 57.963 58.212 -0.49079 37 11 4 0 0 0 0.026094 1 31834 31834 57.471 28.39 1 9437000 38533 2029;13824 25810 26301 45163 45163 0.04186609757448423 LYDTHITVL 9 Unmodified _LYDTHITVL_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.794677734375 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 58.72 1 58.229 57.729 58.729 -0.49079 0 0 0 0.46757 1 31937 31937 16.942 2.104 1 38534 2029;13824 25810 26301 45164 45164 0.04186609757448423 LYDTIFQIF 9 Unmodified _LYDTIFQIF_ 0 0 0 nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5 nc|ENSG00000196954|P49662-2|CASP4 nc|ENSG00000196954|P49662-2|CASP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3073120117188 2 580.305332 1158.59611 -0.18539 -0.00010758 3.0077 0.0017454 2.8223 0.0016378 580.3067718781003 101.36 0.083992 101.32 101.24 101.33 -0.04216 6 2 3 0 0 0 0.10247 1 56315 56315 44.407 26.272 1 13989000 38535 9889 25811 26302 45165 45165 0.02315780417256974 LYDTIFQIF 9 Unmodified _LYDTIFQIF_ 0 0 0 nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000137757|P51878-3|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5 nc|ENSG00000196954|P49662-2|CASP4 nc|ENSG00000196954|P49662-2|CASP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3087158203125 2 580.305332 1158.59611 0.64629 0.00037504 1.0148 0.00058889 1.6611 0.00096393 580.3061881346996 101.83 0.093239 95.654 95.606 95.7 -6.1757 9 5 2 0 0 0 0.023481 1 68357 68357 67.344 31.3 1 41593000 38536 9889 25811 26302 45166 45166 0.02315780417256974 LYDTLGPGAI 10 Unmodified _LYDTLGPGAI_ 0 0 0 nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2742004394531 2 510.274032 1018.53351 0.31852 0.00016253 0.21154 0.00010794 0.53006 0.00027047 510.2741872456765 62.79 0.31871 62.304 62.141 62.46 -0.48617 35 15 3 0 0 0 0.42068 1 34312 34312 20.454 1.1966 1 11236000 38537 16343 25812 26303 45167 45167 0.02498634349092299 LYDVDALRYF 10 Unmodified _LYDVDALRYF_ 0 0 0 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.8240966796875 2 637.824421 1273.63429 -0.12366 -7.8874E-05 0.37122 0.00023677 0.24756 0.0001579 637.824620478115 65.524 0.24973 65.04 64.898 65.148 -0.48428 20 11 2 0 0 0 0.64628 1 35770 35770 8.7454 2.5396 1 1718000 38538 2190 25813 26304 45168 45168 0.008416663319394502 LYDVLRMY 8 Unmodified _LYDVLRMY_ 0 0 0 nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;ENSG00000006611|ENST00000005226|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C MSMS AL20221201_MKP_PDAC_01 4 536.7755126953125 2 536.778428 1071.5423 NaN NaN NaN NaN NaN NaN NaN 44.65 1 39.798 39.298 40.298 -4.852 0 0 0 0.48284 1 27284 27284 50.855 16.668 1 38539 16012 25814 26305 45169 45169 0.009392847139224614 LYDVPANSM 9 Oxidation (M) _LYDVPANSM(Oxidation (M))_ LYDVPANSM(1) LYDVPANSM(57) 0 0 1 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3 ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.232666015625 2 513.23405 1024.45355 -0.42476 -0.000218 1.021 0.000524 0.59621 0.00030599 513.2347029266932 34.642 0.33088 34.642 34.422 34.753 0 25 16 2 0 0 0 0.026094 1 18201 18201 57.471 38.032 1 1720100 38540 6327 25815 26306 45170 45170 1116 -0.057701753164110414 LYDVQFKQ 8 Unmodified _LYDVQFKQ_ 0 0 0 REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.7722778320312 2 520.7742 1039.53385 NaN NaN NaN NaN NaN NaN NaN 95.582 1 89.406 88.906 89.906 -6.1757 0 0 0 0.93066 1 63313 63313 14.582 0 1 + 38541 27008 25816 26307 45171 45171 0.01566054068939593 LYDVRTILL 9 Unmodified _LYDVRTILL_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3341064453125 2 553.334424 1104.6543 0.35889 0.00019859 -1.9933 -0.001103 -1.6344 -0.00090437 553.3341600193302 78.039 0.43483 78.092 77.867 78.302 0.052452 36 17 3 0 0 0 0.022653 1 43046 43046 65.474 21.615 1 5611100 38542 8480 25817 26308 45172 45172 0.10615462062582992 LYDWPYRFLRR 11 Unmodified _LYDWPYRFLRR_ 0 0 0 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 ENSG00000147443|ENST00000276420|DOK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 792.9264526367188 2 792.925335 1583.83612 0.50682 0.00040187 -0.070091 -5.5577E-05 0.43673 0.00034629 793.4268082053773 78.296 0.24007 78.348 78.202 78.442 0.052444 16 9 2 0 0 0 0.7453 1 43258 43258 0 0 1 2086800 38543 5852 25818 26309 45173 45173 0.0675519480814728 LYDWYRVCLL 10 Unmodified _LYDWYRVCLL_ 0 0 0 nc|ENSG00000136295|Q9C0H2-2|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 nc|ENSG00000136295|Q9C0H2-2|TTYH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.3450927734375 2 672.344466 1342.67438 0.36204 0.00024341 1.3154 0.00088437 1.6774 0.0011278 672.3457110238896 67.121 0.29863 66.638 66.481 66.78 -0.48253 31 13 3 0 0 0 0.48505 1 36629 36629 17.113 1.8644 1 5703900 38544 16213 25819 26310 45174 45174 0.016748897308616506 LYECMHLQF 9 Unmodified _LYECMHLQF_ 0 0 0 REV__nc|ENSG00000088280|Q8TDY4-3|ASAP3 REV__nc|ENSG00000088280|Q8TDY4-3|ASAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2677612304688 2 592.26737 1182.52019 NaN NaN NaN NaN NaN NaN NaN 86.07 1 86.07 85.57 86.57 0 0 0 0 0.83329 1 47682 47682 3.5965 0 1 + 38545 17800 25820 26311 45175 45175 -0.06377263026161017 LYEDGTELTE 10 Unmodified _LYEDGTELTE_ 0 0 0 nc|ENSG00000169598|O76075-4|DFFB;nc|ENSG00000169598|O76075-3|DFFB;nc|ENSG00000169598|O76075-2|DFFB;ENSG00000169598|ENST00000378209|DFFB nc|ENSG00000169598|O76075-4|DFFB nc|ENSG00000169598|O76075-4|DFFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5115051269531 3 390.511798 1168.51356 1.0528 0.00041114 -1.3348 -0.00052126 -0.282 -0.00011013 390.51128722543245 81.229 0.56508 81.289 80.941 81.507 0.059929 54 21 3 0 0 0 0.62068 2 44854 44854;44961 5.7834 2.1964 1 6307700 38546 7889 25821 26312 45176;45177 45176 -0.06395206172214785 LYEEELAF 8 Unmodified _LYEEELAF_ 0 0 0 nc|ENSG00000129159|P48547|KCNC1;ENSG00000129159|ENST00000265969|KCNC1 nc|ENSG00000129159|P48547|KCNC1 nc|ENSG00000129159|P48547|KCNC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2446594238281 2 507.244941 1012.47533 0.34055 0.00017274 4.3193 0.0021909 4.6598 0.0023637 507.24702751923166 93.47 0.12198 87.294 87.26 87.382 -6.1757 12 7 2 0 0 0 0.64035 1 61886 61886 22.453 8.9448 1 7618200 38547 4117 25822 26313 45178 45178 -0.0304104729619894 LYEEGVTFLS 10 Unmodified _LYEEGVTFLS_ 0 0 0 nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2902221679688 2 579.289879 1156.56521 0.69856 0.00040467 0.072019 4.172E-05 0.77057 0.00044639 579.2898786109065 47.842 0.29207 47.842 47.686 47.978 0 40 13 4 0 0 0 0.11755 1 26224 26224 43.858 2.0187 1 11120000 38548 4683 25823 26314 45179 45179 -0.0068141768761051935 LYEEGVTFLS 10 Unmodified _LYEEGVTFLS_ 0 0 0 nc|ENSG00000135253|Q6ZWJ8-4|KCP;nc|ENSG00000135253|Q6ZWJ8|KCP;ENSG00000135253|ENST00000610776|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP nc|ENSG00000135253|Q6ZWJ8-4|KCP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.2500610351562 2 579.289879 1156.56521 1.2554 0.00072726 0.27871 0.00016146 1.5342 0.00088872 579.2902133619327 54.113 0.33506 48.248 48.048 48.383 -5.8653 41 18 3 0 0 0 0.11448 1 34229 34229 41.84 1.6004 1 17587000 38549 4683 25823 26314 45180 45180 -0.0068141768761051935 LYEEINQVF 9 Unmodified _LYEEINQVF_ 0 0 0 nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7901000976562 2 577.790047 1153.56554 0.52877 0.00030552 0.50229 0.00029022 1.0311 0.00059574 577.7903072773079 70.992 0.3141 70.515 70.368 70.682 -0.47735 20 13 2 0 0 0 0.30562 1 38868 38868 16.942 8.349 1 1140100 38550 3408 25824 26315 45181 45181 -0.0050999796776523 LYEEINQVF 9 Unmodified _LYEEINQVF_ 0 0 0 nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 577.790047 1153.56554 0.09281 5.3625E-05 1.4394 0.00083169 1.5323 0.00088532 577.7910536650438 70.477 0.25588 70.477 70.333 70.589 0 -0.01892 0.00063234 NaN 16.942 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 730280 38551 3408 25824 26315 -0.0050999796776523 LYEEMLIIL 9 Unmodified _LYEEMLIIL_ 0 0 0 REV__ENSG00000204021|ENST00000404190|LIPK REV__ENSG00000204021|ENST00000404190|LIPK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.54638671875 3 379.547238 1135.61988 NaN NaN NaN NaN NaN NaN NaN 44.596 1 44.574 44.074 45.074 -0.022064 0 0 0 0.46232 1 23932 23932 17.113 1.2657 1 + 38552 24135 25825 26316 45182 45182 0.057498778594663236 LYEESRSL 8 Unmodified _LYEESRSL_ 0 0 0 REV__nc|ENSG00000293487|P0DO92|CDIPTOSP REV__nc|ENSG00000293487|P0DO92|CDIPTOSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7535705566406 2 498.753464 995.492375 0.40746 0.00020322 1.4878 0.00074207 1.8953 0.00094529 498.7541401446875 66.204 0.29767 66.204 66.05 66.348 0 23 13 2 0 0 0 0.57045 1 36898 36898 28.487 0 1 2754500 + 38553 28904 25826 26317 45183 45183 -0.0055512669038080276 LYEESRSL 8 Unmodified _LYEESRSL_ 0 0 0 REV__nc|ENSG00000293487|P0DO92|CDIPTOSP REV__nc|ENSG00000293487|P0DO92|CDIPTOSP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 498.753464 995.492375 0.13243 6.6052E-05 0.78744 0.00039274 0.91987 0.00045879 498.7538076415059 66.766 0.26767 66.283 66.13 66.398 -0.48323 0.039505 -0.00043216 NaN 28.487 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1681700 + 38554 28904 25826 26317 -0.0055512669038080276 LYEEWLEL 8 Unmodified _LYEEWLEL_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000483817.3_1_9:172072-173358:-|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000470192.1_9:69256791-69261296:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B;ENST00000476973.2_9:69243634-69261296:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7762451171875 2 547.773865 1093.53318 0.44314 0.00024274 -0.10262 -5.6214E-05 0.34051 0.00018652 547.7741380473917 27.045 0.36502 24.008 23.854 24.219 -3.0365 63 18 5 0 0 0 0.55032 1 14916 14916 30.225 3.9567 1 118020000 38555 4842;13993 25827 26318 45184 45184 -0.00984785370769714 LYEFLLKEM 9 Unmodified _LYEFLLKEM_ 0 0 0 REV__ENSG00000092330|ENST00000267415|TINF2 REV__ENSG00000092330|ENST00000267415|TINF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8802490234375 3 395.878987 1184.61513 1.7584 0.00069612 0.72118 0.0002855 2.4796 0.00098162 395.8791930425371 47.583 0.47749 42.349 42.087 42.565 -5.2339 81 27 4 0 0 0 0.23158 1 29444 29444 14.405 0 1 76929000 + 38556 17909 25828 26319 45185 45185 0.030209937167001044 LYEFSLMSGIC 11 Unmodified _LYEFSLMSGIC_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.794189453125 2 631.793417 1261.57228 NaN NaN NaN NaN NaN NaN NaN 41.407 1 41.405 40.905 41.905 -0.0017929 0 0 0 0.93893 1 22127 22127 3.2813 0.97858 1 + 38557 24000 25829 26320 45186 45186 -0.048041444030104685 LYEGPSDALRS 11 Unmodified _LYEGPSDALRS_ 0 0 0 REV__ENSG00000019485|ENST00000683152|PRDM11 REV__ENSG00000019485|ENST00000683152|PRDM11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.870361328125 3 403.203299 1206.58807 1.3398 0.00054023 -1.3755 -0.00055459 -0.035628 -1.4365E-05 403.2030869953749 37.406 0.4149 33.123 32.891 33.306 -4.2835 81 24 5 0 0 0 0.63851 1 21899 21899 4.7159 0.30977 1 21916000 + 38558 17101 25830 26321 45187 45187 -0.006963985701531783 LYEHNFAFF 9 Unmodified _LYEHNFAFF_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2805786132812 2 594.279649 1186.54475 0.8009 0.00047596 1.0187 0.00060537 1.8196 0.0010813 594.2804470399986 74.9 0.42806 74.422 74.131 74.559 -0.47713 32 17 3 0 0 0 0.19127 1 40979 40979 24.021 7.0783 1 1685900 38559 829 25831 26322 45188 45188 -0.041065435567816166 LYEHNFAFF 9 Unmodified _LYEHNFAFF_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.279541015625 2 594.279649 1186.54475 0.14304 8.5003E-05 0.79214 0.00047075 0.93518 0.00055576 594.280044590713 74.345 0.38573 74.389 74.159 74.545 0.043983 54 16 4 0 0 0 0.094149 2 40927 40927;41026 34.402 9.1823 1 12658000 38560 829 25831 26322 45189;45190 45189 -0.041065435567816166 LYEILQKKF 9 Unmodified _LYEILQKKF_ 0 0 0 REV__nc|ENSG00000196335|Q9BXU1-3|STK31 REV__nc|ENSG00000196335|Q9BXU1-3|STK31 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 591.2904663085938 2 591.350074 1180.6856 1.0528 0.00062257 3.48 0.0020579 4.5328 0.0026805 591.3518833989637 94.513 0.25876 88.337 88.186 88.445 -6.1757 32 14 3 0 0 0 0.18521 1 62562 62562 16.942 3.0362 1 18156000 + 38561 23817 25832 26323 45191 45191 0.1024803509665162 LYEKDIQLF 9 Unmodified _LYEKDIQLF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.8162841796875 2 584.816064 1167.61758 0.12791 7.4803E-05 -0.59723 -0.00034927 -0.46932 -0.00027447 584.815522428411 63.554 0.33524 63.554 63.421 63.756 0 37 16 3 0 0 0 0.060956 1 35412 35412 53.833 0 1 5626700 38562 7559 25833 26324 45192 45192 0.04047165445990686 LYEKDIQLF 9 Unmodified _LYEKDIQLF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8145751953125 2 584.816064 1167.61758 0.43967 0.00025713 -1.4489 -0.00084737 -1.0093 -0.00059024 584.814648954059 63.966 0.41846 63.481 63.36 63.779 -0.48512 55 22 4 0 0 0 0.040337 1 34855 34855 61.602 13.256 1 16127000 38563 7559 25833 26324 45193 45193 0.04047165445990686 LYEKDIQLF 9 Unmodified _LYEKDIQLF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8165283203125 2 584.816064 1167.61758 0.81208 0.00047492 0.1314 7.6843E-05 0.94348 0.00055176 584.8160577077807 69.281 0.45444 63.105 62.923 63.377 -6.1757 43 24 2 0 0 0 0.0090383 1 45346 45346 93.166 21.244 1 30242000 38564 7559 25833 26324 45194 45194 0.04047165445990686 LYELCDVYL 9 Unmodified _LYELCDVYL_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MSMS AL20221201_MKP_PDAC_01 4 377.5185241699219 3 377.519459 1129.53655 NaN NaN NaN NaN NaN NaN NaN 68.415 1 62.239 61.739 62.739 -6.1757 0 0 0 0.46232 1 44652 44652 17.113 0 1 38565 10278 25834 26325 45195 45195 -0.023038585884251006 LYELFPTLI 9 Unmodified _LYELFPTLI_ 0 0 0 REV__ENST00000302550.15_1_1:244849962-244852625:+|nuORF REV__ENST00000302550.15_1_1:244849962-244852625:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2133178710938 3 370.214476 1107.6216 0.79132 0.00029296 -1.4318 -0.00053007 -0.64046 -0.00023711 370.2131948346471 41.411 0.76521 36.803 36.528 37.294 -4.6079 197 49 5 0 0 0 0.28047 2 24719 24719;24849 12.241 12.241 1 1101600000 + 38566 25338 25835 26326 45196;45197 45196 0.07209254939721177 LYELHVFTF 9 Unmodified _LYELHVFTF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.80615234375 2 584.8055 1167.59645 0.11246 6.5769E-05 0.72294 0.00042278 0.8354 0.00048855 584.8056894778252 85.286 0.30437 85.347 85.187 85.492 0.061745 35 11 4 0 0 0 0.011968 1 47191 47191 74.929 30.522 1 56686000 38567 16035 25836 26327 45198 45198 0.0193520013710895 LYELHVFTF 9 Unmodified _LYELHVFTF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8067016601562 2 584.8055 1167.59645 NaN NaN NaN NaN NaN NaN NaN 85.433 1 85.495 84.995 85.995 0.061638 0 0 0 0.04157 1 47293 47293 61.357 31.133 1 38568 16035 25836 26327 45199 45199 0.0193520013710895 LYELHVFTF 9 Unmodified _LYELHVFTF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8053588867188 2 584.8055 1167.59645 0.60576 0.00035425 -0.11741 -6.8661E-05 0.48835 0.00028559 584.8053790613152 98.618 0.18306 92.442 92.352 92.535 -6.1757 23 13 2 0 0 0 0.0083938 1 65414 65414 108 53.223 1 210210000 38569 16035 25836 26327 45200 45200 0.0193520013710895 LYELLPEG 8 Unmodified _LYELLPEG_ 0 0 0 REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.4962158203125 1 933.492775 932.485499 0.35698 0.00033324 -0.3352 -0.00031291 0.021778 2.033E-05 933.4929933781158 92.623 0.17514 92.165 92.109 92.284 -0.4574 11 7 2 0 0 0 0.6895 1 50631 50631 18.135 3.5533 1 510080 + 38570 25146 25837 26328 45201 45201 0.01655560429048819 LYELYKQQ 8 Unmodified _LYELYKQQ_ 0 0 0 REV__ENST00000489825.5_1_1:224607181-224612368:-|nuORF REV__ENST00000489825.5_1_1:224607181-224612368:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7862548828125 2 542.787307 1083.56006 0.36243 0.00019672 -1.9527 -0.0010599 -1.5902 -0.00086316 542.786011375702 30.428 0.29142 30.348 30.205 30.496 -0.080429 23 10 3 0 0 0 0.74163 1 15798 15798 13.508 3.434 1 4461400 + 38571 21704 25838 26329 45202 45202 0.02162323240418118 LYEMTFWAI 9 Unmodified _LYEMTFWAI_ 0 0 0 REV__ENSG00000182674|ENST00000523207|KCNB2 REV__ENSG00000182674|ENST00000523207|KCNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8595275878906 3 391.859816 1172.55762 -0.37045 -0.00014516 -0.27128 -0.0001063 -0.64173 -0.00025147 391.85980310486036 31.756 0.15909 31.756 31.681 31.84 0 11 7 2 0 0 0 0.58466 1 16566 16566 1.1933 0 1 890300 + 38572 23289 25839 26330 45203 45203 -0.021758484888778185 LYEMTFWAI 9 Unmodified _LYEMTFWAI_ 0 0 0 REV__ENSG00000182674|ENST00000523207|KCNB2 REV__ENSG00000182674|ENST00000523207|KCNB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.859816 1172.55762 -0.37045 -0.00014516 -0.27128 -0.0001063 -0.64173 -0.00025147 391.85980310486036 31.756 0.15909 31.756 31.681 31.84 0 0.093064 -0.0010562 NaN 1.1933 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 890300 + 38573 23289 25839 26330 -0.021758484888778185 LYEMTFWAI 9 Unmodified _LYEMTFWAI_ 0 0 0 REV__ENSG00000182674|ENST00000523207|KCNB2 REV__ENSG00000182674|ENST00000523207|KCNB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.859816 1172.55762 0.12673 4.9659E-05 3.0461 0.0011936 3.1728 0.0012433 391.8612934842097 31.699 0.14443 31.57 31.503 31.647 -0.12915 -0.093064 0.0028436 NaN 1.1933 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1052000 + 38574 23289 25839 26330 -0.021758484888778185 LYENKDYIRNC 11 Unmodified _LYENKDYIRNC_ 0 0 0 nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF;nc|ENSG00000019991|P14210-6|HGF;nc|ENSG00000019991|P14210-5|HGF;nc|ENSG00000019991|P14210-2|HGF;nc|ENSG00000019991|P14210-4|HGF nc|ENSG00000019991|P14210-3|HGF nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.5628356933594 3 477.56261 1429.666 0.41954 0.00020036 0.68829 0.0003287 1.1078 0.00052906 477.56288401828806 59.055 0.28813 58.995 58.839 59.127 -0.060719 49 13 5 0 0 0 0.71728 1 32247 32247 2.6312 0 1 21933000 38575 518 25840 26331 45204 45204 -0.031647089763964686 LYENKEIFL 9 Unmodified _LYENKEIFL_ 0 0 0 ENST00000559111.1_1_15:99797871-99798159:+|nuORF ENST00000559111.1_1_15:99797871-99798159:+|nuORF ENST00000559111.1_1_15:99797871-99798159:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8165283203125 2 584.816064 1167.61758 0.81208 0.00047492 0.1314 7.6843E-05 0.94348 0.00055176 584.8160577077807 69.281 0.45444 63.105 62.923 63.377 -6.1757 43 24 2 0 0 0 0.013609 1 45217 45217 88.904 3.2621 1 30242000 38576 15290 25841 26332 45205 45205 0.04047165445990686 LYENTFQEL 9 Unmodified _LYENTFQEL_ 0 0 0 nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000491720.5_1_2:182783318-182792989:+|nuORF;ENST00000440623.5_1_2:182781645-182792989:+|nuORF nc|ENSG00000138434|P28290-2|ITPRID2 nc|ENSG00000138434|P28290-2|ITPRID2 MSMS AL20221201_MKP_PDAC_01 4 578.7794189453125 2 578.779679 1155.5448 NaN NaN NaN NaN NaN NaN NaN 69.888 1 63.712 63.212 64.212 -6.1757 0 0 0 0.074615 1 45646 45646 49.933 21.446 1 38577 5054 25842 26333 45206 45206 -0.02674588347417739 LYEQAFQLL 9 Unmodified _LYEQAFQLL_ 0 0 0 ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8035888671875 2 562.802957 1123.59136 0.64296 0.00036186 0.20592 0.00011589 0.84888 0.00047775 562.8030824807336 88.077 0.39127 87.573 87.382 87.774 -0.50423 50 17 4 0 0 0 0.06294 2 48198 48095;48198 41.84 17.819 1 5443200 38578 2071 25843 26334 45207;45208 45208 0.03450896274512161 LYEQAFQLL 9 Unmodified _LYEQAFQLL_ 0 0 0 ENSG00000102871|ENST00000345057|TRADD;nc|ENSG00000102871|Q15628-2|TRADD ENSG00000102871|ENST00000345057|TRADD ENSG00000102871|ENST00000345057|TRADD MSMS AL20221201_MKP_PDAC_01 4 562.803955078125 2 562.802957 1123.59136 NaN NaN NaN NaN NaN NaN NaN 97.804 1 91.629 91.129 92.129 -6.1757 0 0 0 0.32177 1 64824 64824 24.021 7.0783 1 38579 2071 25843 26334 45209 45209 0.03450896274512161 LYEQNFVCKFA 11 Unmodified _LYEQNFVCKFA_ 0 0 0 nc|ENSG00000166145|O43278|SPINT1;ENSG00000166145|ENST00000562057|SPINT1 nc|ENSG00000166145|O43278|SPINT1 nc|ENSG00000166145|O43278|SPINT1 MSMS AL20221201_MKP_PDAC_01 4 681.3301391601562 2 681.331556 1360.64856 NaN NaN NaN NaN NaN NaN NaN 101.39 1 95.216 94.716 95.716 -6.1757 0 0 0 0.77961 1 68023 68023 13.042 2.2185 1 38580 7436 25844 26335 45210 45210 -0.017340045114224267 LYEQVVQEP 9 Unmodified _LYEQVVQEP_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2;REV__nc|ENSG00000257335|O43451-1|MGAM REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.85595703125 3 368.85724 1103.54989 0.068758 2.5362E-05 -2.3802 -0.00087795 -2.3114 -0.00085259 368.8562996997614 20.477 0.20851 20.487 20.37 20.578 0.010551 22 10 3 0 0 0 0.50598 1 10431 10431 7.1017 2.9122 1 1333200 + 38581 24566;24564 25845 26336 45211 45211 0.0022571551519376953 LYERGFENI 9 Unmodified _LYERGFENI_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF;ENST00000478980.1_1_2:27256012-27257182:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.787841796875 2 570.787838 1139.56112 1.0442 0.00059599 -1.3257 -0.00075671 -0.28157 -0.00016072 570.7869883874173 46.174 0.18789 46.174 46.044 46.232 0 15 8 2 0 0 0 0.094149 1 25235 25235 34.402 11.665 1 3250600 38582 3468 25846 26337 45212 45212 -0.003074623906513807 LYERKFPV 8 Unmodified _LYERKFPV_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2;nc|ENSG00000058729|Q9BVS4-2|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3011474609375 2 526.300384 1050.58622 0.58272 0.00030669 0.22392 0.00011785 0.80664 0.00042454 526.300627856301 65.19 0.18443 65.19 65.077 65.261 7.6294E-06 20 8 3 0 0 0 0.58039 1 35748 35748 20.454 2.3186 1 4559600 38583 807 25847 26338 45213 45213 0.06294637202563536 LYERLLVKF 9 Unmodified _LYERLLVKF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2424621582031 3 394.241137 1179.70158 NaN NaN NaN NaN NaN NaN NaN 51.598 1 51.54 51.04 52.04 -0.058094 0 0 0 0.71962 1 27938 27938 8.7454 3.6979 1 38584 4205 25848 26339 45214 45214 0.11891741333556638 LYERMVQIF 9 Unmodified _LYERMVQIF_ 0 0 0 REV__ENST00000412649.5_1_22:19170842-19171202:-|nuORF;REV__nc|ENSG00000070371|P53675-2|CLTCL1 REV__nc|ENSG00000070371|P53675-2|CLTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5476379394531 3 400.214482 1197.62162 -0.28408 -0.00011369 -2.4691 -0.00098817 -2.7532 -0.0011019 400.2131973897877 30.594 0.2388 30.624 30.498 30.737 0.030106 21 10 3 0 0 0 0.53666 1 16000 16000 2.9952 0.90923 1 1380600 + 38585 26724;17470 25849 26340 45215 45215 0.030709316680713528 LYESKLYKI 9 Unmodified _LYESKLYKI_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.224365234375 3 386.225264 1155.65396 0.29446 0.00011373 -0.55299 -0.00021358 -0.25853 -9.9851E-05 386.22494095437315 41.03 0.23962 40.727 40.601 40.841 -0.30304 31 11 4 0 0 0 0.060956 1 21700 21700 42.312 21.732 1 3337300 38586 2991 25850 26341 45216 45216 0.08236042342718974 LYESKLYKI 9 Unmodified _LYESKLYKI_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2249145507812 3 386.225264 1155.65396 0.76853 0.00029683 -0.0091702 -3.5418E-06 0.75936 0.00029328 386.22557750540705 45.371 0.40717 40.416 40.191 40.598 -4.9549 59 27 3 0 0 0 0.15882 2 27770 27770;27911 27.223 10.791 1 25196000 38587 2991 25850 26341 45217;45218 45217 0.08236042342718974 LYESKLYKI 9 Unmodified _LYESKLYKI_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MSMS AL20221201_MKP_PDAC_01 4 578.83447265625 2 578.834257 1155.65396 NaN NaN NaN NaN NaN NaN NaN 45.321 1 40.366 39.866 40.866 -4.9549 0 0 0 0.024784 1 27799 27799 87.258 41.518 1 38588 2991 25850 26341 45219 45219 0.08236042342718974 LYESKLYKI 9 Unmodified _LYESKLYKI_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 386.225264 1155.65396 1.1752 0.00045389 -2.0538 -0.00079321 -0.87855 -0.00033932 386.5587901331405 45.766 0.31004 40.811 40.641 40.951 -4.9549 0.042028 -0.00038861 NaN 42.312 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10688000 38589 2991 25850 26341 0.08236042342718974 LYETYTTNEH 10 Unmodified _LYETYTTNEH_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1914978027344 3 424.191059 1269.55135 0.47822 0.00020286 -0.22085 -9.3684E-05 0.25736 0.00010917 424.19087033107513 62.896 0.19616 62.41 62.346 62.542 -0.48617 16 9 2 0 0 0 0.69377 1 34319 34319 1.7423 0 1 6571000 + 38590 21352 25851 26342 45220 45220 -0.0726469518670001 LYEYITRHF 9 Unmodified _LYEYITRHF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5484619140625 3 414.548629 1240.62406 0.19258 7.9834E-05 0.0015329 6.3545E-07 0.19411 8.047E-05 414.5487455067597 48.493 0.25479 48.449 48.3 48.555 -0.04369 33 12 3 0 0 0 0.1685 1 26137 26137 24.882 18.251 1 5639500 38591 1745 25852 26343 45221 45221 0.013371033973726298 LYEYITRHF 9 Unmodified _LYEYITRHF_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000457179.5_1_22:22317029-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 414.548629 1240.62406 1.4864 0.00061617 -0.75289 -0.00031211 0.73347 0.00030406 414.88233439131284 54.241 0.061401 48.375 48.339 48.401 -5.8653 -0.036742 -0.00089442 NaN 24.882 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 4094400 38592 1745 25852 26343 0.013371033973726298 LYEYYSDI 8 Unmodified _LYEYYSDI_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.241943359375 2 533.242398 1064.47024 0.44388 0.00023669 -0.21371 -0.00011396 0.23016 0.00012273 533.2433552803607 85.424 0.46259 84.922 84.791 85.253 -0.5015 111 40 3 0 0 0 0.77907 1 46710 46710 10.183 3.8293 1 4943900 + 38593 19040 25853 26344 45222 45222 -0.05941351158821817 LYEYYSDI 8 Unmodified _LYEYYSDI_ 0 0 0 REV__ENSG00000116406|ENST00000318130|EDEM3 REV__ENSG00000116406|ENST00000318130|EDEM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.242398 1064.47024 0.31149 0.0001661 1.921 0.0010244 2.2325 0.0011905 533.243989292397 85.049 0.085175 85.049 84.985 85.071 0 0.063511 0.0020419 NaN 10.183 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 664630 + 38594 19040 25853 26344 -0.05941351158821817 LYFACYEKL 9 Unmodified _LYFACYEKL_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;ENST00000479722.1_1_10:101373360-101379897:-|nuORF ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MSMS AL20221201_MKP_PDAC_01 4 383.8616027832031 3 383.859816 1148.55762 NaN NaN NaN NaN NaN NaN NaN 44.016 1 39.251 38.751 39.751 -4.7648 0 0 0 0.63508 1 26812 26812 11.495 2.7493 1 38595 6380 25854 26345 45223 45223 -0.010718484888911917 LYFCFVTF 8 Unmodified _LYFCFVTF_ 0 0 0 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 ENSG00000184261|ENST00000327876|KCNK12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2536010742188 2 520.251514 1038.48848 NaN NaN NaN NaN NaN NaN NaN 45.692 1 45.692 45.192 46.192 0 0 0 0 0.95607 1 24922 24922 9.3474 3.587 1 38596 9237 25855 26346 45224 45224 -0.029228877177956747 LYFCLGVAGGF 11 Unmodified _LYFCLGVAGGF_ 0 0 0 REV__ENSG00000124140|ENST00000243964|SLC12A5;REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6 REV__ENSG00000124140|ENST00000243964|SLC12A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7822875976562 2 573.786253 1145.55795 0.6557 0.00037623 2.3976 0.0013757 3.0533 0.0017519 573.7875132441388 48.228 0.46357 47.875 47.595 48.058 -0.3526 51 23 3 0 0 0 0.5111 1 25764 25764 15.847 0 1 14126000 + 38597 19417;20452 25856 26347 45225 45225 -0.00900428769023165 LYFCLHFAIYP 11 Unmodified _LYFCLHFAIYP_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|351|3|anti-sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|351|3|anti-sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|351|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.9014282226562 3 462.902015 1385.68422 0.55668 0.00025769 -0.76721 -0.00035514 -0.21052 -9.7452E-05 462.90141366173634 62.413 0.44289 61.925 61.638 62.081 -0.48764 65 20 4 0 0 0 0.67371 1 33926 33926 3.0723 0.81953 1 35148000 38598 15964 25857 26348 45226 45226 0.006800777362741428 LYFDFEFP 8 Unmodified _LYFDFEFP_ 0 0 0 REV__ENSG00000092847|ENST00000373204|AGO1 REV__ENSG00000092847|ENST00000373204|AGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2503051757812 2 539.250026 1076.4855 0.37385 0.0002016 0.085827 4.6282E-05 0.45967 0.00024788 539.2500070658049 84.054 0.43673 83.554 83.339 83.775 -0.49961 46 18 3 0 0 0 0.78849 1 46049 46049 9.3474 1.4373 1 3564700 + 38599 17915 25858 26349 45227 45227 -0.04968439570939154 LYFDHSTGF 9 Unmodified _LYFDHSTGF_ 0 0 0 ENSG00000164252|ENST00000312916|AGGF1 ENSG00000164252|ENST00000312916|AGGF1 ENSG00000164252|ENST00000312916|AGGF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7490234375 2 543.748182 1085.48181 NaN NaN NaN NaN NaN NaN NaN 55.064 1 54.586 54.086 55.086 -0.47798 0 0 0 0.043758 1 29860 29860 60.39 33.506 1 38600 7168 25859 26350 45228 45228 -0.05751109344805627 LYFDSNEAPE 10 Unmodified _LYFDSNEAPE_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.7584228515625 2 592.758943 1183.50333 1.4802 0.00087741 -1.3296 -0.00078813 0.15062 8.928E-05 592.7581812033077 92.742 0.22963 92.773 92.625 92.854 0.030197 13 8 2 0 0 0 0.57893 1 51579 51579 12.241 4.3305 1 2124500 + 38601 23079 25860 26351 45229 45229 -0.08107769106754859 LYFDVDENRF 10 Unmodified _LYFDVDENRF_ 0 0 0 REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2098693847656 3 439.875182 1316.60372 0.16053 7.0615E-05 0.0463 2.0366E-05 0.20683 9.0981E-05 439.8754111022018 51.551 0.39429 51.497 51.342 51.736 -0.053871 64 19 5 0 0 0 0.60623 2 27870 27870;27975 6.1918 1.4759 1 32032000 + 38602 20634 25861 26352 45230;45231 45230 -0.041921120531242195 LYFDVDENRF 10 Unmodified _LYFDVDENRF_ 0 0 0 REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2098693847656 3 439.875182 1316.60372 0.16053 7.0615E-05 0.0463 2.0366E-05 0.20683 9.0981E-05 439.8754111022018 51.551 0.39429 51.497 51.342 51.736 -0.053871 64 19 5 0 0 0 0.23489 1 27870 27870 6.1918 0.78914 1 32032000 + 38603 20634 25861 26352 45232 45232 -0.041921120531242195 LYFDVDENRF 10 Unmodified _LYFDVDENRF_ 0 0 0 REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 439.875182 1316.60372 0.21439 9.4306E-05 -1.185 -0.00052127 -0.97066 -0.00042697 440.20890467558326 51.881 0.11259 51.447 51.4 51.512 -0.43367 -0.025028 -0.0013248 NaN 6.1918 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1109300 + 38604 20634 25861 26352 -0.041921120531242195 LYFENAMRF 9 Oxidation (M) _LYFENAM(Oxidation (M))RF_ LYFENAM(1)RF LYFENAM(56)RF 0 0 1 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.783203125 2 603.784241 1205.55393 0.46642 0.00028162 0.24506 0.00014797 0.71149 0.00042958 603.7842481204314 53.672 0.33758 53.22 53.005 53.342 -0.45173 40 16 3 0 0 0 0.028475 1 28990 28990 56.177 46.103 1 5986800 38605 3293 25862 26353 45233 45233 586 -0.04062518262753656 LYFENAMRF 9 Oxidation (M) _LYFENAM(Oxidation (M))RF_ LYFENAM(1)RF LYFENAM(56)RF 0 0 1 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.783447265625 2 603.784241 1205.55393 -0.063147 -3.8127E-05 0.90216 0.00054471 0.83901 0.00050658 603.7847206277486 53.261 0.33767 53.198 53.044 53.381 -0.063423 40 16 3 0 0 0 0.028475 1 28950 28950 56.177 33.441 1 5097000 38606 3293 25862 26353 45234 45234 586 -0.04062518262753656 LYFENAMRF 9 Oxidation (M) _LYFENAM(Oxidation (M))RF_ LYFENAM(1)RF LYFENAM(56)RF 0 0 1 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MSMS AL20221201_MKP_PDAC_01 4 603.7854614257812 2 603.784241 1205.55393 NaN NaN NaN NaN NaN NaN NaN 59.183 1 53.108 52.608 53.608 -6.0745 0 0 0 0.053277 1 37972 37972 56.177 30.778 1 38607 3293 25862 26353 45235 45235 586 -0.04062518262753656 LYFENAMRF 9 Unmodified _LYFENAMRF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.785400390625 2 595.786784 1189.55902 0.42948 0.00025588 0.008061 4.8027E-06 0.43754 0.00026068 595.7866807979725 83.051 0.26431 76.875 76.677 76.941 -6.1757 22 14 2 0 0 0 0.0082485 1 54581 54581 96.285 50.264 1 11220000 38608 3293 25862 26354 45236 45236 -0.02818214400144825 LYFENAMRF 9 Unmodified _LYFENAMRF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7853393554688 2 595.786784 1189.55902 0.53911 0.0003212 -1.1419 -0.00068031 -0.60275 -0.00035911 595.7862236434222 83.167 0.42673 76.992 76.897 77.323 -6.1757 32 22 2 0 0 0 0.0041763 2 54732 54732;54864 120.45 46.028 1 12921000 38609 3293 25862 26354 45237;45238 45237 -0.02818214400144825 LYFENAMRF 9 Unmodified _LYFENAMRF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MSMS AL20221201_MKP_PDAC_01 4 595.7893676757812 2 595.786784 1189.55902 NaN NaN NaN NaN NaN NaN NaN 83.743 1 77.568 77.068 78.068 -6.1757 0 0 0 0.047623 1 55077 55077 58.679 33.28 1 38610 3293 25862 26354 45239 45239 -0.02818214400144825 LYFESVRTF 9 Unmodified _LYFESVRTF_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3009033203125 2 581.300581 1160.58661 0.30035 0.00017459 0.58605 0.00034067 0.8864 0.00051527 581.3010299356432 63.344 0.25972 62.858 62.709 62.969 -0.48617 28 11 3 0 0 0 0.07087 1 34523 34523 39.95 14.55 1 2208400 38611 6419 25863 26355 45240 45240 0.012740121317619924 LYFESVRTF 9 Unmodified _LYFESVRTF_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8028564453125 2 581.300581 1160.58661 0.79015 0.00045932 0.079999 4.6503E-05 0.87015 0.00050582 581.3004124244292 62.915 0.33209 62.894 62.717 63.049 -0.021614 37 16 3 0 0 0 0.025842 1 34395 34395 57.722 38.465 1 11563000 38612 6419 25863 26355 45241 45241 0.012740121317619924 LYFFDCYLI 9 Unmodified _LYFFDCYLI_ 0 0 0 REV__ENSG00000136240|ENST00000258739|KDELR2 REV__ENSG00000136240|ENST00000258739|KDELR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.78759765625 2 598.788461 1195.56237 0.31175 0.00018667 -0.42542 -0.00025474 -0.11367 -6.8063E-05 599.2895357551022 75.066 0.80444 68.891 68.534 69.338 -6.1757 110 43 3 0 0 0 0.078417 4 48996 48996;49118;49242;49364 38.151 9.0696 1 13630000 + 38613 20150 25864 26356 45242;45243;45244;45245 45242 -0.027589643461169544 LYFFSSFLQN 10 Unmodified _LYFFSSFLQN_ 0 0 0 ENST00000560014.5_1_15:60678230-60678305:-|nuORF ENST00000560014.5_1_15:60678230-60678305:-|nuORF ENST00000560014.5_1_15:60678230-60678305:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.3133544921875 2 633.313689 1264.61282 NaN NaN NaN NaN NaN NaN NaN 91.316 1 85.141 84.641 85.641 -6.1757 0 0 0 0.40102 1 60362 60362 31.268 5.869 1 38614 15305 25865 26357 45246 45246 -0.008897186967487869 LYFGVKKNYS 10 Unmodified _LYFGVKKNYS_ 0 0 0 ENST00000490998.5_1_2:71302504-71303116:+|nuORF ENST00000490998.5_1_2:71302504-71303116:+|nuORF ENST00000490998.5_1_2:71302504-71303116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8306884765625 2 609.829506 1217.64446 0.65225 0.00039776 0.20747 0.00012652 0.85972 0.00052428 609.8296292861806 58.857 0.23963 58.797 58.661 58.901 -0.060719 20 11 2 0 0 0 0.27276 1 32058 32058 29.082 0.59474 1 1761200 38615 14272 25866 26358 45247 45247 0.044342740571892136 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8082885742188 2 574.808574 1147.60259 0.68569 0.00039414 -1.019 -0.00058574 -0.33333 -0.0001916 574.8079093659231 64.929 0.40023 64.929 64.739 65.14 1.5259E-05 63 19 4 0 0 0 0.023164 2 35620 35515;35620 60.39 28.084 1 51966000 38616 4497 25867 26359 45248;45249 45249 0.03469718368660324 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3099365234375 2 574.808574 1147.60259 0.88362 0.00050791 -2.7583 -0.0015855 -1.8746 -0.0010776 575.3080805849769 75.371 0.30309 69.195 68.981 69.284 -6.1757 24 16 2 0 0 0 0.078417 1 49255 49255 38.151 11.883 1 7732700 38617 4497 25867 26359 45250 45250 0.03469718368660324 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8094482421875 2 574.808574 1147.60259 0.57904 0.00033284 -0.13968 -8.0292E-05 0.43936 0.00025255 574.8090130709076 76.554 1.7578 70.378 69.215 70.973 -6.1757 195 95 3 0 0 0 0.0026776 8 50142 49526;49652;49785;49899;50018;50142;50269;50395 128.37 64.405 1 38552000 38618 4497 25867 26359 45251;45252;45253;45254;45255;45256;45257;45258 45256 0.03469718368660324 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MSMS AL20221201_MKP_PDAC_01 4 574.8077392578125 2 574.808574 1147.60259 NaN NaN NaN NaN NaN NaN NaN 75.52 1 69.344 68.844 69.844 -6.1757 0 0 0 0.023279 1 49391 49391 74.423 32.583 1 38619 4497 25867 26359 45259 45259 0.03469718368660324 LYFHINQTL 9 Unmodified _LYFHINQTL_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A;nc|ENSG00000133193|Q969W3|VCF1 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.808574 1147.60259 0.32578 0.00018726 -1.912 -0.001099 -1.5862 -0.00091175 574.8074215192293 65.44 0.3098 64.956 64.791 65.101 -0.48428 0.013264 -0.00081335 NaN 60.39 27 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3704900 38620 4497 25867 26359 0.03469718368660324 LYFISPFGR 9 Unmodified _LYFISPFGR_ 0 0 0 ENSG00000180096|ENST00000321367|SEPTIN1;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF ENSG00000180096|ENST00000321367|SEPTIN1 ENSG00000180096|ENST00000321367|SEPTIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3004760742188 2 550.300384 1098.58622 0.31384 0.00017271 -0.55834 -0.00030725 -0.2445 -0.00013455 550.3000487223646 62.377 0.32983 62.344 62.201 62.531 -0.032787 47 17 4 0 0 0 0.19361 1 34154 34154 13.906 0 1 68853000 38621 8881 25868 26360 45260 45260 0.040866372025675446 LYFIVIYIF 9 Unmodified _LYFIVIYIF_ 0 0 0 ENST00000305366.7_1_3:149087371-149087659:-|nuORF ENST00000305366.7_1_3:149087371-149087659:-|nuORF ENST00000305366.7_1_3:149087371-149087659:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.847412109375 2 595.846636 1189.67872 -0.74358 -0.00044306 1.0058 0.00059931 0.26223 0.00015625 595.8471896993262 101.49 0.14069 101.45 101.35 101.49 -0.04216 6 4 2 0 0 0 0.22317 1 56388 56388 20.871 3.9289 1 20765000 38622 11616 25869 26361 45261 45261 0.09146722216064518 LYFKDDFKLF 10 Unmodified _LYFKDDFKLF_ 0 0 0 ENST00000492219.1_1_X:40573912-40573993:-|nuORF ENST00000492219.1_1_X:40573912-40573993:-|nuORF ENST00000492219.1_1_X:40573912-40573993:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 668.349853515625 2 668.352814 1334.69108 NaN NaN NaN NaN NaN NaN NaN 53.611 1 47.807 47.307 48.307 -5.8042 0 0 0 0.64375 1 33906 33906 19.257 2.1441 1 38623 14291 25870 26362 45262 45262 0.03711713888469603 LYFKKRAMF 9 Unmodified _LYFKKRAMF_ 0 0 0 nc|ENSG00000133256|P35913-3|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B nc|ENSG00000133256|P35913-3|PDE6B nc|ENSG00000133256|P35913-3|PDE6B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 602.8075561523438 2 602.338987 1202.66342 0.68368 0.00041181 -0.86327 -0.00051998 -0.17959 -0.00010817 602.3384567337723 97.763 0.1758 91.587 91.476 91.651 -6.1757 19 12 2 0 0 0 0.20528 1 64828 64828 8.5933 0.43775 1 26921000 38624 4501 25871 26363 45263 45263 0.07019532147251084 LYFKSCHSCY 10 Unmodified _LYFKSCHSCY_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.5158996582031 3 417.515943 1249.526 -0.25784 -0.00010765 -0.3248 -0.00013561 -0.58265 -0.00024326 417.5159158684355 34.219 0.21436 34.028 33.89 34.104 -0.19131 19 7 3 0 0 0 0.5802 1 17848 17848 12.175 6.8779 1 3146800 38625 10627 25872 26364 45264 45264 -0.08878164514476339 LYFKSCHSCY 10 Unmodified _LYFKSCHSCY_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.51611328125 3 417.515943 1249.526 0.034949 1.4592E-05 -0.41145 -0.00017179 -0.37651 -0.0001572 417.515916536373 33.9 0.24111 33.929 33.816 34.057 0.028934 28 10 4 0 0 0 0.65023 1 17862 17862 8.4443 4.8572 1 4155000 38626 10627 25872 26364 45265 45265 -0.08878164514476339 LYFKWKNK 8 Unmodified _LYFKWKNK_ 0 0 0 REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L REV__nc|ENSG00000242441|Q9UNN4-2|GTF2A1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2174072265625 3 376.218443 1125.6335 NaN NaN NaN NaN NaN NaN NaN 20.517 1 20.517 20.017 21.017 0 0 0 0 0.97444 1 10328 10328 3.5965 2.1146 1 + 38627 17441 25873 26365 45266 45266 0.07570916473559919 LYFLMDYLF 9 Unmodified _LYFLMDYLF_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7904052734375 2 612.804111 1223.59367 0.77806 0.0004768 3.6393 0.0022302 4.4174 0.002707 612.8057062916447 73.388 0.16964 72.912 72.849 73.018 -0.47588 14 7 2 0 0 0 0.203 1 40137 40137 9.3474 0.75416 1 1486900 + 38628 23122 25874 26366 45267 45267 -0.009183913120523357 LYFLMDYLF 9 Unmodified _LYFLMDYLF_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.806640625 2 612.804111 1223.59367 0.99203 0.00060792 3.2007 0.0019614 4.1927 0.0025693 612.8059969234989 86.04 0.34136 79.864 79.635 79.977 -6.1757 31 18 2 0 0 0 0.20428 1 56651 56651 32.117 10.37 1 10409000 + 38629 23122 25874 26366 45268 45268 -0.009183913120523357 LYFLYLIE 8 Unmodified _LYFLYLIE_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENSG00000086619|ENST00000354619|ERO1B ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.5353393554688 3 358.535438 1072.58448 NaN NaN NaN NaN NaN NaN NaN 6.8579 1 4.3759 3.8759 4.8759 -2.482 0 0 0 0.97444 1 3465 3465 1.8442 0 1 38630 10024 25875 26367 45269 45269 0.051095833939371005 LYFMTTAS 8 Unmodified _LYFMTTAS_ 0 0 0 REV__ENST00000319172.9_1_3:119150883-119151006:-|nuORF REV__ENST00000319172.9_1_3:119150883-119151006:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 934.4426879882812 1 933.438631 932.431355 0.99883 0.00093234 -1.2501 -0.0011668 -0.25123 -0.0002345 933.4367973642042 59.387 0.4966 53.273 53.06 53.557 -6.1147 41 26 2 0 0 0 0.65867 1 38070 38070 20.871 1.4322 1 24010000 + 38631 25492 25876 26368 45270 45270 -0.03756354994175126 LYFPYLQR 8 Unmodified _LYFPYLQR_ 0 0 0 ENST00000358598.6_1_17:66526631-66526718:+|nuORF ENST00000358598.6_1_17:66526631-66526718:+|nuORF ENST00000358598.6_1_17:66526631-66526718:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.301513671875 2 550.300384 1098.58622 0.31384 0.00017271 -0.55834 -0.00030725 -0.2445 -0.00013455 550.3000487223646 62.377 0.32983 62.344 62.201 62.531 -0.032787 47 17 4 0 0 0 0.66338 1 34041 34041 13.508 0 1 68853000 38632 12130 25877 26369 45271 45271 0.040866372025675446 LYFQQQDIF 9 Unmodified _LYFQQQDIF_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7994384765625 2 601.298039 1200.58152 0.38431 0.00023109 0.73658 0.0004429 1.1209 0.00067399 601.2988004789603 96.95 0.16926 96.645 96.565 96.734 -0.30473 15 10 2 0 0 0 0.53666 1 52932 52932 5.2307 0 1 372450 + 38633 17416 25878 26370 45272 45272 -0.010742917308789401 LYFQQQDIF 9 Unmodified _LYFQQQDIF_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 601.298039 1200.58152 0.38431 0.00023109 0.73658 0.0004429 1.1209 0.00067399 601.2988004789603 96.95 0.16926 96.645 96.565 96.734 -0.30473 0 0 NaN 5.2307 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 372450 + 38634 17416 25878 26370 -0.010742917308789401 LYFQRALKL 9 Unmodified _LYFQRALKL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000471692.1_1_5:137527956-137534147:-|nuORF ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.9039916992188 3 384.569365 1150.68626 -0.014828 -5.7024E-06 -1.209 -0.00046495 -1.2238 -0.00047065 384.56952117880144 55.42 0.67322 55.351 54.783 55.456 -0.068737 55 33 3 0 0 0 0.13231 1 30091 30091 29.841 14.592 1 4192900 38635 1638 25879 26371 45273 45273 0.11694874536351563 LYFQSKENL 9 Unmodified _LYFQSKENL_ 0 0 0 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7994384765625 2 571.298039 1140.58152 0.9052 0.00051714 0.48678 0.0002781 1.392 0.00079524 571.2983854261338 49.932 0.27931 44.393 44.251 44.531 -5.5391 28 17 2 0 0 0 0.013609 1 31231 31231 70.332 5.097 1 15104000 38636 3424 25880 26372 45274 45274 0.01685708269155839 LYFRIRFYFRN 11 Unmodified _LYFRIRFYFRN_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 797.9364624023438 2 797.935702 1593.85685 NaN NaN NaN NaN NaN NaN NaN 101.77 1 101.72 101.22 102.22 -0.045853 0 0 0 0.94184 1 56534 56534 1.1933 0.88631 1 38637 2315 25881 26373 45275 45275 0.0836778518785195 LYFVGWAKF 9 Unmodified _LYFVGWAKF_ 0 0 0 ENST00000367210.2_2_1:203771301-203771436:+|nuORF ENST00000367210.2_2_1:203771301-203771436:+|nuORF ENST00000367210.2_2_1:203771301-203771436:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.538330078125 3 377.539294 1129.59605 -0.24884 -9.3947E-05 -0.33461 -0.00012633 -0.58345 -0.00022028 377.5390234638361 33.127 0.33036 32.968 32.787 33.118 -0.15918 25 13 2 0 0 0 0.54444 1 17218 17218 2.7352 0 1 1714300 38638 12226 25882 26374 45276 45276 0.03643825207950613 LYFVLYVFF 9 Unmodified _LYFVLYVFF_ 0 0 0 ENST00000346213.8_1_17:40277044-40277497:-|nuORF ENST00000346213.8_1_17:40277044-40277497:-|nuORF ENST00000346213.8_1_17:40277044-40277497:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.8880004882812 3 404.223083 1209.64742 0.27967 0.00011305 0.46881 0.0001895 0.74848 0.00030255 404.2235060992314 15.212 0.26044 12.685 12.52 12.78 -2.5273 54 37 2 0 0 0 0.21302 1 7797 7797 2.9952 1.8019 1 4319000 38639 12029 25883 26375 45277 45277 0.05098149181981171 LYFVWYVF 8 Unmodified _LYFVWYVF_ 0 0 0 nc|ENSG00000187848|Q9UBL9-4|P2RX2;nc|ENSG00000187848|Q9UBL9-7|P2RX2;nc|ENSG00000187848|Q9UBL9-2|P2RX2;nc|ENSG00000187848|Q9UBL9-3|P2RX2;ENSG00000187848|ENST00000643471|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 nc|ENSG00000187848|Q9UBL9-4|P2RX2 MSMS AL20221201_MKP_PDAC_01 4 568.7935791015625 2 568.794404 1135.57425 NaN NaN NaN NaN NaN NaN NaN 67.24 1 61.064 60.564 61.564 -6.1757 0 0 0 0.9185 1 43791 43791 17.087 0.14425 1 38640 16466 25884 26376 45278 45278 0.011890204593555609 LYFWGYSEA 9 Unmodified _LYFWGYSEA_ 0 0 0 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 MSMS AL20221201_MKP_PDAC_01 4 379.1756286621094 3 379.17468 1134.50221 NaN NaN NaN NaN NaN NaN NaN 48.005 1 42.771 42.271 43.271 -5.2339 0 0 0 0.6306 1 29860 29860 7.609 0 1 38641 1422 25885 26377 45279 45279 -0.059659386849943985 LYGAGLWE 8 Unmodified _LYGAGLWE_ 0 0 0 ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG ENSG00000141337|ENST00000621439|ARSG MULTI-MSMS AL20221201_MKP_PDAC_01 4 908.4521484375 1 908.451245 907.443968 0.55089 0.00050046 0.89786 0.00081566 1.4487 0.0013161 908.4516918650819 91.353 0.43211 85.178 84.939 85.371 -6.1757 34 23 2 0 0 0 0.32412 2 60432 60313;60432 52.693 12.244 1 7583500 38642 5315 25886 26378 45280;45281 45281 -0.013455755396194036 LYGAPGMLKL 10 Unmodified _LYGAPGMLKL_ 0 0 0 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8038330078125 2 531.804445 1061.59434 0.73401 0.00039035 -0.23882 -0.000127 0.49519 0.00026334 531.8041217699213 67.357 0.64117 61.182 60.857 61.499 -6.1757 87 35 3 0 0 0 0.44373 2 43798 43798;43920 19.257 6.7254 1 36371000 + 38643 20878 25887 26379 45282;45283 45282 0.06600448127687741 LYGAPGVEF 9 Unmodified _LYGAPGVEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4779052734375 1 952.47746 951.470183 -0.079313 -7.5544E-05 0.15733 0.00014985 0.078019 7.4311E-05 952.4773582882441 66.501 0.26842 66.501 66.348 66.616 0 21 11 2 0 0 0 0.03327 2 37053 37053;37149 53.576 0 1 2262000 38644 1104 25888 26380 45284;45285 45284 -0.007493063681295098 LYGAPGVEF 9 Unmodified _LYGAPGVEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4762573242188 1 952.47746 951.470183 -0.086018 -8.193E-05 -0.66328 -0.00063176 -0.7493 -0.00071369 952.4765684710126 67.664 0.2198 67.664 67.523 67.743 0 19 10 2 0 0 0 0.027803 1 37683 37683 56.541 0 1 3058900 38645 1104 25888 26380 45286 45286 -0.007493063681295098 LYGAPGVEF 9 Unmodified _LYGAPGVEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 952.47705078125 1 952.47746 951.470183 0.26222 0.00024976 -0.64884 -0.000618 -0.38662 -0.00036824 952.476577949981 67.06 0.31682 66.577 66.398 66.715 -0.48323 28 14 3 0 0 0 0.03327 2 36669 36574;36669 53.576 0 1 2793600 38646 1104 25888 26380 45287;45288 45288 -0.007493063681295098 LYGAPGVEF 9 Unmodified _LYGAPGVEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 952.474365234375 1 952.47746 951.470183 0.4943 0.00047081 -0.11895 -0.00011329 0.37535 0.00035751 952.4770504292819 68.175 0.27328 67.693 67.575 67.848 -0.48218 26 12 3 0 0 0 0.012158 2 37232 37232;37344 74.396 0 1 3099500 38647 1104 25888 26380 45289;45290 45289 -0.007493063681295098 LYGAPGVEF 9 Unmodified _LYGAPGVEF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 952.4776611328125 1 952.47746 951.470183 0.75692 0.00072095 0.8074 0.00076903 1.5643 0.00149 952.4785810634893 74.803 0.51413 68.627 68.376 68.89 -6.1757 46 26 2 0 0 0 0.0036753 3 48938 48812;48938;49055 123.1 0 1 17177000 38648 1104 25888 26380 45291;45292;45293 45292 -0.007493063681295098 LYGATEKTFL 10 Unmodified _LYGATEKTFL_ 0 0 0 REV__nc|ENSG00000164808|Q14159-2|SPIDR REV__nc|ENSG00000164808|Q14159-2|SPIDR MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.808349609375 2 571.808239 1141.60193 1.1951 0.00068337 -1.4087 -0.00080548 -0.21355 -0.00012211 571.8072138964402 55.044 0.37844 49.123 48.921 49.3 -5.9211 50 23 3 0 0 0 0.033218 1 35060 35060 66.457 10.28 1 36278000 + 38649 21952 25889 26381 45294 45294 0.03678878928940321 LYGCCHQRL 9 2 Carbamidomethyl (C) _LYGC(Carbamidomethyl (C))C(Carbamidomethyl (C))HQRL_ LYGC(1)C(1)HQRL LYGC(85)C(85)HQRL 0 2 0 ENST00000484346.1_1_7:131189072-131190857:-|nuORF;ENST00000446198.5_1_7:131189072-131193853:-|nuORF;nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL ENST00000484346.1_1_7:131189072-131190857:-|nuORF ENST00000484346.1_1_7:131189072-131190857:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.7809448242188 2 603.778967 1205.54338 -0.31613 -0.00019087 0.78277 0.00047262 0.46664 0.00028175 603.7795206011899 23.878 0.26048 21.051 20.898 21.159 -2.8273 26 15 2 0 0 0 0.0090851 1 12910 12910 85.357 55.132 1 4257800 38650 4069 25890 26382 45295 45295 409;410 -0.05116824188803548 LYGCMFSMVF 10 Unmodified _LYGCMFSMVF_ 0 0 0 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.1769714355469 3 399.842891 1196.50684 0.76627 0.00030639 -0.15072 -6.0265E-05 0.61555 0.00024612 399.8422650726775 75.288 0.10453 74.811 74.74 74.844 -0.47714 9 4 3 0 0 0 0.66569 1 41221 41221 3.5871 0 1 951060 38651 5177 25891 26383 45296 45296 -0.08354837129763837 LYGCWNADFF 10 Unmodified _LYGCWNADFF_ 0 0 0 REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF REV__ENST00000521436.5_1_8:22474947-22476312:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5113830566406 3 412.511187 1234.51173 NaN NaN NaN NaN NaN NaN NaN 35.998 1 35.998 35.498 36.498 0 0 0 0 0.91523 1 19067 19067 3.8763 0.55669 1 + 38652 21452 25892 26384 45297 45297 -0.09614493671142554 LYGEKTYNF 9 Unmodified _LYGEKTYNF_ 0 0 0 ENSG00000021355|ENST00000380739|SERPINB1 ENSG00000021355|ENST00000380739|SERPINB1 ENSG00000021355|ENST00000380739|SERPINB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7778930664062 2 567.776939 1133.53933 0.66388 0.00037694 0.82161 0.00046649 1.4855 0.00084343 567.7770630781928 42.398 0.20933 42.398 42.279 42.488 0 12 9 2 0 0 0 0.14594 1 22971 22971 37.974 17.52 1 3124100 38653 523 25893 26385 45298 45298 -0.022102671392531192 LYGEVLLCLL 10 Unmodified _LYGEVLLCLL_ 0 0 0 REV__ENST00000481338.1_1_14:105182091-105185384:+|nuORF REV__ENST00000481338.1_1_14:105182091-105185384:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7703247070312 2 568.325211 1134.63587 0.26516 0.0001507 -3.8678 -0.0021981 -3.6026 -0.0020475 568.3231514514235 70.214 0.20253 69.735 69.641 69.844 -0.47903 15 9 2 0 0 0 0.21952 1 38383 38383 21.747 1.293 1 2295700 + 38654 27692 25894 26386 45299 45299 0.07393584096348604 LYGFQEKEAF 10 Unmodified _LYGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3033447265625 2 616.303321 1230.59209 0.53451 0.00032942 -0.42083 -0.00025936 0.11368 7.0063E-05 616.3030224522442 59.637 0.33484 59.584 59.42 59.754 -0.053062 51 16 4 0 0 0 0.33553 1 32559 32559 25.399 2.663 1 50710000 38655 6999 25895 26387 45300 45300 -0.01398309076444093 LYGFQEKEAF 10 Unmodified _LYGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 616.303321 1230.59209 0.31359 0.00019327 -1.6349 -0.0010076 -1.3213 -0.00081434 616.8042242818923 60.026 0.19559 59.535 59.411 59.607 -0.49079 -0.024508 -0.0013823 NaN 25.399 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1878600 38656 6999 25895 26387 -0.01398309076444093 LYGHKRLSY 9 Unmodified _LYGHKRLSY_ 0 0 0 nc|ENSG00000173264|Q96N19|GPR137;nc|ENSG00000173264|Q96N19-4|GPR137;nc|ENSG00000173264|Q96N19-5|GPR137;nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137;ENST00000536017.1_1_11:64053906-64055433:+|nuORF nc|ENSG00000173264|Q96N19|GPR137 nc|ENSG00000173264|Q96N19|GPR137 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5458374023438 3 379.545219 1135.61383 -0.12198 -4.6298E-05 0.65573 0.00024888 0.53374 0.00020258 379.5455367586928 30.622 0.35023 30.652 30.456 30.806 0.030106 46 15 4 0 0 0 0.51218 1 16074 16074 4.1895 0 1 5629200 38657 16389 25896 26388 45301 45301 0.051445404628111646 LYGIKLNEL 9 Unmodified _LYGIKLNEL_ 0 0 0 REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF REV__ENST00000591671.1_1_18:44660807-44662674:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.8141479492188 2 531.813325 1061.6121 0.56742 0.00030176 -0.69432 -0.00036925 -0.1269 -6.7489E-05 531.8133388206646 72.85 0.31774 72.85 72.734 73.052 0 27 15 2 0 0 0 0.55144 1 40610 40610 4.3292 0 1 1045400 + 38658 29164 25897 26389 45302 45302 0.08375486654176711 LYGKIAEAF 9 Unmodified _LYGKIAEAF_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2791137695312 2 506.279118 1010.54368 0.12051 6.1013E-05 -1.36 -0.00068853 -1.2395 -0.00062752 506.27859952387774 51.917 0.34902 51.917 51.73 52.079 0 36 15 3 0 0 0 0.14 1 28685 28685 29.082 12.139 1 21772000 38659 3686 25898 26390 45303 45303 0.038832420743119656 LYGKIAEAF 9 Unmodified _LYGKIAEAF_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2797546386719 2 506.279118 1010.54368 0.14894 7.5406E-05 0.033769 1.7097E-05 0.18271 9.2503E-05 506.2790898576815 52.438 0.40746 52.004 51.809 52.216 -0.43367 68 20 4 0 0 0 0.011671 2 28261 28261;28370 75.761 37.787 1 260250000 38660 3686 25898 26390 45304;45305 45304 0.038832420743119656 LYGKIAEAF 9 Unmodified _LYGKIAEAF_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2791137695312 2 506.279118 1010.54368 0.57662 0.00029193 -0.15856 -8.0274E-05 0.41806 0.00021166 506.2789679467365 52.086 0.39423 52.027 51.835 52.229 -0.058918 54 18 4 0 0 0 0.013609 2 28171 28171;28274 70.332 39.695 1 36329000 38661 3686 25898 26390 45306;45307 45306 0.038832420743119656 LYGKIAEAF 9 Unmodified _LYGKIAEAF_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.28076171875 2 506.279118 1010.54368 0.32537 0.00016473 0.34631 0.00017533 0.67168 0.00034006 506.2792482792217 58.046 1.413 52.019 51.569 52.982 -6.0275 206 78 4 0 0 0 0.012668 7 37000 37000;37135;37267;37395;37517;37644;37831 72.968 29.11 1 553970000 38662 3686 25898 26390 45308;45309;45310;45311;45312;45313;45314 45308 0.038832420743119656 LYGKIIHL 8 Unmodified _LYGKIIHL_ 0 0 0 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 ENSG00000168802|ENST00000448552|CHTF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.8002319335938 2 478.80002 955.585488 0.70639 0.00033822 -0.49017 -0.00023469 0.21622 0.00010353 478.7996637148388 56.928 0.23534 56.859 56.72 56.955 -0.068737 17 11 2 0 0 0 0.28922 1 30996 30996 56.541 24.424 1 4504600 38663 7801 25899 26391 45315 45315 0.10591842553515107 LYGKSLYSF 9 Unmodified _LYGKSLYSF_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;nc|ENSG00000196975|P09525-2|ANXA4;ENST00000471395.1_1_2:70045687-70052644:+|nuORF nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.785400390625 2 539.2844 1076.55425 0.27331 0.00014739 -1.2712 -0.00068552 -0.99786 -0.00053813 539.2841476146388 54.676 0.30083 54.609 54.484 54.785 -0.066936 24 14 2 0 0 0 0.036857 1 29672 29672 51.63 23.143 1 5061900 38664 9893 25900 26392 45316 45316 0.01903224728744135 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2711486816406 2 475.271293 948.528032 -0.086046 -4.0895E-05 -0.28976 -0.00013771 -0.3758 -0.00017861 475.2711130982156 35.445 0.37033 35.445 35.265 35.635 0 53 18 4 0 0 0 0.11214 2 18690 18690;18801 96.111 0 1 82426000 + 38665 21820 25901 26393 45317;45318 45317 0.05170955557275647 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.270751953125 2 475.271293 948.528032 -0.29838 -0.00014181 -1.0016 -0.00047604 -1.3 -0.00061785 475.2706154884249 35.586 0.18376 35.363 35.288 35.472 -0.2224 11 8 2 0 0 0 0.29252 1 18648 18648 56.177 0 1 5838600 + 38666 21820 25901 26393 45319 45319 0.05170955557275647 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2716369628906 2 475.271293 948.528032 0.30074 0.00014293 0.33175 0.00015767 0.63249 0.0003006 475.27134279836514 40.1 0.4338 35.57 35.356 35.79 -4.5294 100 38 3 0 0 0 0.076687 3 23911 23774;23911;24042 118.89 0 1 143810000 + 38667 21820 25901 26393 45320;45321;45322 45321 0.05170955557275647 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 475.271293 948.528032 -0.086046 -4.0895E-05 -0.28976 -0.00013771 -0.3758 -0.00017861 475.2711130982156 35.445 0.37033 35.445 35.265 35.635 0 -0.014651 -8.3049E-05 NaN 118.89 53 18 4 NaN NaN NaN NaN 0 NaN NaN 0 82426000 + 38668 21820 25901 26393 0.05170955557275647 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 475.271293 948.528032 -0.29838 -0.00014181 -1.0016 -0.00047604 -1.3 -0.00061785 475.2706154884249 35.586 0.18376 35.363 35.288 35.472 -0.2224 -0.09613 -0.00075971 NaN 118.89 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5838600 + 38669 21820 25901 26393 0.05170955557275647 LYGKVQEL 8 Unmodified _LYGKVQEL_ 0 0 0 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 475.271293 948.528032 0.30074 0.00014293 0.33175 0.00015767 0.63249 0.0003006 475.27134279836514 40.1 0.4338 35.57 35.356 35.79 -4.5294 0.11078 0.00050772 NaN 118.89 100 38 3 NaN NaN NaN NaN 0 NaN NaN 0 143810000 + 38670 21820 25901 26393 0.05170955557275647 LYGLIHARY 9 Unmodified _LYGLIHARY_ 0 0 0 ENSG00000204435|ENST00000375882|CSNK2B;ENST00000468255.5_1_6:31633906-31636470:+|nuORF;ENST00000481269.1_1_6:31633906-31636957:+|nuORF ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2102661132812 3 369.209948 1104.60801 0.40597 0.00014989 0.18021 6.6535E-05 0.58618 0.00021642 369.20995769089313 42.632 0.27772 42.624 42.467 42.745 -0.0088234 26 12 3 0 0 0 0.042911 1 22807 22807 43.772 27.623 1 13235000 38671 10283 25902 26394 45323 45323 0.05989441951146546 LYGLQAGRLL 10 Unmodified _LYGLQAGRLL_ 0 0 0 ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS ENSG00000015285|ENST00000376701|WAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3340454101562 2 552.332216 1102.64988 1.296 0.00071584 3.4196 0.0018887 4.7156 0.0026046 552.3345238009252 98.054 0.17155 91.878 91.781 91.952 -6.1757 17 10 2 0 0 0 0.24625 1 65006 65006 30.637 3.7529 1 19155000 38672 493 25903 26395 45324 45324 0.10265997639658053 LYGNIYIPEIL 11 Unmodified _LYGNIYIPEIL_ 0 0 0 ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENST00000577263.5_1_17:61903352-61904262:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 436.7039489746094 3 436.579706 1306.71729 0.69987 0.00030555 -1.506 -0.0006575 -0.80617 -0.00035196 436.57897799298706 38.389 0.23377 34.02 33.916 34.15 -4.3689 24 14 2 0 0 0 0.29485 1 22589 22589 8.7518 1.2747 1 9388800 38673 15528 25904 26396 45325 45325 0.07619983059953483 LYGNIYIPEIL 11 Unmodified _LYGNIYIPEIL_ 0 0 0 ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENST00000577263.5_1_17:61903352-61904262:-|nuORF ENST00000577263.5_1_17:61903352-61904262:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 436.579706 1306.71729 0.36324 0.00015858 -2.5451 -0.0011112 -2.1819 -0.00095258 436.5786395497578 34.115 0.25076 34.144 34.036 34.287 0.028934 0.062193 -0.00051598 NaN 8.7518 20 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2396600 38674 15528 25904 26396 0.07619983059953483 LYGNKCYLF 9 Carbamidomethyl (C) _LYGNKC(Carbamidomethyl (C))YLF_ LYGNKC(1)YLF LYGNKC(74)YLF 0 1 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.287109375 2 589.289159 1176.56377 0.8574 0.00050526 0.056623 3.3367E-05 0.91403 0.00053863 589.2889985069652 61.774 0.41947 55.599 55.404 55.823 -6.1757 38 21 2 0 0 0 0.012148 1 39743 39743 74.423 51.274 1 37423000 38675 2821 25905 26397 45326 45326 292 -0.017453302573812834 LYGNVHSW 8 Unmodified _LYGNVHSW_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.S158Kfs*28|1|0.38|ENSG00000183337|chrX:40074873-40074874|-/T|frameshift_variant nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2376708984375 2 488.237784 974.461016 0.69871 0.00034114 -0.1992 -9.7256E-05 0.49952 0.00024388 488.2375648477301 40.455 0.21218 40.158 40.028 40.24 -0.29716 16 9 2 0 0 0 0.71527 1 21412 21412 15.847 1.2655 1 2012100 38676 9138 25906 26398 45327 45327 -0.027236549338226723 LYGNVHSW 8 Unmodified _LYGNVHSW_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.S158Kfs*28|1|0.38|ENSG00000183337|chrX:40074873-40074874|-/T|frameshift_variant nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2377014160156 2 488.237784 974.461016 0.53201 0.00025975 1.192 0.00058199 1.724 0.00084174 488.2382370313254 44.937 0.297 40.085 39.905 40.202 -4.852 31 19 2 0 0 0 0.57045 1 27441 27441 28.487 6.0342 1 12495000 38677 9138 25906 26398 45328 45328 -0.027236549338226723 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.5189208984375 1 974.519325 973.512048 0.24219 0.00023602 -0.13482 -0.00013139 0.10737 0.00010463 974.5192919917555 66.204 0.31743 66.204 66.03 66.348 0 36 14 3 0 0 0 0.012148 2 36869 36869;36978 74.423 40.32 1 9041500 38678 1437 25907 26399 45329;45330 45329 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7639770507812 2 487.7633 973.512048 0.32775 0.00015987 0.35879 0.000175 0.68654 0.00033487 487.76335474986973 66.234 0.37693 66.234 65.995 66.372 0 33 17 2 0 0 0 0.03327 2 36991 36890;36991 53.576 22.66 1 10253000 38679 1437 25907 26399 45331;45332 45332 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.51953125 1 974.519325 973.512048 0.14904 0.00014525 -0.027068 -2.6378E-05 0.12198 0.00011887 974.5191999416924 66.781 0.34848 66.298 66.09 66.438 -0.48323 39 16 3 0 0 0 0.012148 2 36503 36397;36503 74.423 38.379 1 8687300 38680 1437 25907 26399 45333;45334 45334 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7631530761719 2 487.7633 973.512048 0.39005 0.00019025 0.14539 7.0914E-05 0.53544 0.00026117 487.76330418596524 66.735 0.41301 66.251 66.046 66.459 -0.48323 42 19 3 0 0 0 0.019979 1 36483 36483 63.563 35.076 1 9985300 38681 1437 25907 26399 45335 45335 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.520263671875 1 974.519325 973.512048 0.52597 0.00051257 0.34267 0.00033394 0.86865 0.00084651 974.5196678558516 73.697 0.52695 67.521 67.243 67.77 -6.1757 47 25 2 0 0 0 0.0082281 3 48164 48051;48164;48287 108 50.728 1 42950000 38682 1437 25907 26399 45336;45337;45338 45337 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7631225585938 2 487.7633 973.512048 0.84979 0.0004145 2.0755 0.0010124 2.9253 0.0014269 487.7647257492023 73.668 0.83747 67.493 67.226 68.064 -6.1757 78 41 3 0 0 0 0.013472 3 48069 48069;48178;48304 70.716 22.37 1 53455000 38683 1437 25907 26399 45339;45340;45341 45339 0.024232493203840022 LYGPDVPTI 9 Unmodified _LYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 487.7633 973.512048 1.2575 0.00061335 -1.8916 -0.00092267 -0.63415 -0.00030932 487.7608675512275 66.409 0.37326 66.418 66.146 66.519 0.0095596 0.11705 -0.0020571 NaN 63.563 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1673800 38684 1437 25907 26399 0.024232493203840022 LYGPRLDER 9 Unmodified _LYGPRLDER_ 0 0 0 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8002319335938 2 559.80128 1117.58801 0.47855 0.00026789 -0.19788 -0.00011077 0.28067 0.00015712 559.8012723623675 92.991 0.32381 86.816 86.608 86.932 -6.1757 33 20 2 0 0 0 0.32871 1 61583 61583 15.847 1.2655 1 18452000 38685 1554 25908 26400 45342 45342 0.033916462205070275 LYGPYLEPFWE 11 Unmodified _LYGPYLEPFWE_ 0 0 0 REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 REV__nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.8414306640625 2 707.339904 1412.66525 0.54061 0.0003824 -0.39376 -0.00027852 0.14685 0.00010387 707.339485743376 99.191 0.26625 93.015 92.878 93.144 -6.1757 38 15 3 0 0 0 0.35243 1 65948 65948 24.021 5.8742 1 53607000 + 38686 20522 25909 26401 45343 45343 -0.024571803538037784 LYGQSGKFAW 10 Unmodified _LYGQSGKFAW_ 0 0 0 REV__ENST00000475971.5_1_7:893033-912965:+|nuORF REV__ENST00000475971.5_1_7:893033-912965:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7943725585938 2 578.792924 1155.57129 1.2284 0.00071101 -1.916 -0.001109 -0.68755 -0.00039795 578.7920741267586 79.628 1.9471 73.452 72.422 74.369 -6.1757 347 114 5 0 0 0 0.13391 2 51721 51584;51721 41.84 3.8656 1 192730000 + 38687 21955 25910 26402 45344;45345 45345 -0.0002685466542970971 LYGQVQVF 8 Unmodified _LYGQVQVF_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2585144042969 2 477.258185 952.501818 1.0551 0.00050355 -0.11775 -5.6196E-05 0.93735 0.00044736 477.2581878060329 70.627 0.34744 64.452 64.281 64.628 -6.1757 24 18 2 0 0 0 0.41521 1 46187 46187 42.968 16.627 1 18333000 38688 6855 25911 26403 45346 45346 0.023666863858124998 LYGRDCDLGTF 11 Unmodified _LYGRDCDLGTF_ 0 0 0 ENST00000337714.7_1_17:55198527-55198593:+|nuORF ENST00000337714.7_1_17:55198527-55198593:+|nuORF ENST00000337714.7_1_17:55198527-55198593:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.2908325195312 2 630.289888 1258.56522 0.69912 0.00044065 1.1279 0.00071088 1.827 0.0011515 630.2905036575024 80.034 0.44372 79.544 79.312 79.755 -0.48932 53 17 5 0 0 0 0.50515 1 43883 43883 16.149 0.90062 1 10943000 38689 11933 25912 26404 45347 45347 -0.05371740959276394 LYGRDCDLGTF 11 Unmodified _LYGRDCDLGTF_ 0 0 0 ENST00000337714.7_1_17:55198527-55198593:+|nuORF ENST00000337714.7_1_17:55198527-55198593:+|nuORF ENST00000337714.7_1_17:55198527-55198593:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.2903442382812 2 630.289888 1258.56522 0.33073 0.00020846 1.0175 0.00064131 1.3482 0.00084977 630.2904482729101 79.421 0.56168 79.476 79.233 79.795 0.054977 65 21 5 0 0 0 0.50515 1 43815 43815 16.149 0.90062 1 70498000 38690 11933 25912 26404 45348 45348 -0.05371740959276394 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8731689453125 3 394.873336 1181.59818 -0.072054 -2.8452E-05 0.36326 0.00014344 0.29121 0.00011499 394.8734846598998 41.192 0.39366 41.19 41.008 41.402 -0.0017929 63 18 5 0 0 0 0.06187 2 21950 21950;22061 45.7 28.587 1 161690000 38691 3574 25913 26405 45349;45350 45349 0.014642539457554449 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8065795898438 2 591.806365 1181.59818 -0.046744 -2.7663E-05 0.39175 0.00023184 0.34501 0.00020418 591.8065936724691 41.192 0.28526 41.19 41.053 41.338 -0.0017929 44 13 4 0 0 0 0.016184 2 21968 21968;22076 67.344 20.423 1 26142000 38692 3574 25913 26405 45351;45352 45351 0.014642539457554449 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8742370605469 3 394.873336 1181.59818 0.86372 0.00034106 0.31955 0.00012618 1.1833 0.00046724 394.87341806323496 46.003 0.4241 41.048 40.802 41.226 -4.9549 95 27 4 0 0 0 0.14602 2 28209 28209;28347 26.268 17.523 1 160610000 38693 3574 25913 26405 45353;45354 45353 0.014642539457554449 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.80712890625 2 591.806365 1181.59818 0.49613 0.00029361 0.5386 0.00031875 1.0347 0.00061236 591.8067802013678 45.984 0.36072 41.029 40.815 41.176 -4.9549 63 23 3 0 0 0 0.0090851 2 28374 28235;28374 85.357 29.18 1 56710000 38694 3574 25913 26405 45355;45356 45356 0.014642539457554449 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2071533203125 3 394.873336 1181.59818 0.918 0.00036249 -1.3271 -0.00052404 -0.40913 -0.00016155 394.8732394806007 67.59 0.79799 61.415 60.769 61.567 -6.1757 70 44 2 0 0 0 0.06187 2 44024 43860;44024 38.176 16.376 1 14501000 38695 3574 25913 26405 45357;45358 45358 0.014642539457554449 LYGRHFNYL 9 Unmodified _LYGRHFNYL_ 0 0 0 nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B;ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B nc|ENSG00000121274|Q8NDF8-2|TENT4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8737182617188 3 394.873336 1181.59818 0.80336 0.00031723 -0.86401 -0.00034117 -0.060642 -2.3946E-05 394.8733136942422 67.863 0.49422 61.688 61.517 62.011 -6.1757 49 28 2 0 0 0 0.2143 2 44232 44232;44426 20.415 5.4574 1 17725000 38696 3574 25913 26405 45359;45360 45359 0.014642539457554449 LYGRLLVTF 9 Unmodified _LYGRLLVTF_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2;IGHMBP2|p.Y145*|1|0.13|ENSG00000132740|chr11:68908323-68908323|C/-|frameshift_variant ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3244018554688 2 541.32386 1080.63317 0.19693 0.0001066 0.67832 0.00036719 0.87525 0.00047379 541.3242851778851 75.714 0.54895 75.762 75.537 76.086 0.047943 54 24 3 0 0 0 0.009483 2 41800 41695;41800 81.89 40.051 1 29793000 38697 4444 25914 26406 45361;45362 45362 0.09607496753687883 LYGRLLVTF 9 Unmodified _LYGRLLVTF_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2;IGHMBP2|p.Y145*|1|0.13|ENSG00000132740|chr11:68908323-68908323|C/-|frameshift_variant ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3251342773438 2 541.32386 1080.63317 1.1986 0.00064885 0.39883 0.0002159 1.5975 0.00086474 541.3240133301937 96.694 0.304 90.519 90.37 90.674 -6.1757 61 17 4 0 0 0 0.009483 2 64147 64026;64147 81.89 40.051 1 182520000 38698 4444 25914 26406 45363;45364 45364 0.09607496753687883 LYGRNFNYL 9 Unmodified _LYGRNFNYL_ 0 0 0 ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A ENST00000514697.1_1_5:6746314-6755055:+|nuORF ENST00000514697.1_1_5:6746314-6755055:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2998657226562 2 580.298373 1158.58219 0.64266 0.00037294 1.2603 0.00073135 1.903 0.0011043 580.299081111294 53.092 0.2951 53.029 52.882 53.177 -0.063423 43 14 4 0 0 0 0.017075 1 28742 28742 74.423 14.033 1 15927000 38699 2931 25915 26407 45365 45365 0.009245477088597909 LYGRSLRYD 9 Unmodified _LYGRSLRYD_ 0 0 0 ENST00000504824.5_1_5:218488-235547:+|nuORF;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA;ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000457233.5_1_3:195390605-195393086:+|nuORF;ENST00000440850.5_1_3:195704061-195712605:-|nuORF;SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant ENST00000504824.5_1_5:218488-235547:+|nuORF;SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant ENST00000504824.5_1_5:218488-235547:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8716125488281 3 381.536612 1141.58801 0.028891 1.1023E-05 1.5722 0.00059984 1.601 0.00061086 381.53710431140127 17.004 0.12012 17.009 16.925 17.045 0.0050564 21 14 2 0 0 0 0.59532 1 8539 8539 0.86438 0.23755 1 550730 38700 1107;30158 25916 26408 45366 45366 0.022876462204976633 LYGRSYTW 8 Unmodified _LYGRSYTW_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.25927734375 2 523.258717 1044.50288 0.39215 0.0002052 0.037428 1.9584E-05 0.42958 0.00022478 523.2587588021979 43.303 0.25707 43.288 43.164 43.421 -0.015667 23 11 3 0 0 0 0.29252 1 23194 23194 56.177 18.026 1 8551000 38701 8856;10717 25917 26409 45367 45367 -0.017590992453051513 LYGRSYTW 8 Unmodified _LYGRSYTW_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000243811|ENST00000216099|APOBEC3D ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2591552734375 2 523.258717 1044.50288 0.7354 0.0003848 0.58664 0.00030696 1.322 0.00069177 523.258589770215 48.106 0.54043 42.872 42.675 43.216 -5.2339 52 32 2 0 0 0 0.22971 2 29952 29952;30086 65.235 18.314 1 36843000 38702 8856;10717 25917 26409 45368;45369 45368 -0.017590992453051513 LYGSYKCLF 9 Unmodified _LYGSYKCLF_ 0 0 0 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 REV__nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2734985351562 2 547.272978 1092.5314 1.3154 0.00071987 0.61572 0.00033696 1.9311 0.0010568 547.2732252872702 33.821 0.41223 29.836 29.572 29.984 -3.9853 50 22 3 0 0 0 0.05447 2 19347 19347;19468 43.858 8.8924 1 21219000 + 38703 17536 25918 26410 45370;45371 45370 -0.011161176603991407 LYGVFTIHF 9 Unmodified _LYGVFTIHF_ 0 0 0 ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7948608398438 2 548.794935 1095.57532 0.25599 0.00014049 -0.58939 -0.00032346 -0.3334 -0.00018297 548.7945387656449 99.036 0.18173 92.861 92.793 92.974 -6.1757 15 10 2 0 0 0 0.0081063 1 65826 65826 93.883 61.766 1 31573000 38704 6178 25919 26411 45372 45372 0.031352348282553066 LYGYILYF 8 Unmodified _LYGYILYF_ 0 0 0 REV__ENSG00000124786|ENST00000644923|SLC35B3 REV__ENSG00000124786|ENST00000644923|SLC35B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2787475585938 2 526.278586 1050.54262 0.90843 0.00047809 -1.8884 -0.00099385 -0.98001 -0.00051576 526.276740057969 52.538 0.40731 46.803 46.617 47.024 -5.7345 39 22 3 0 0 0 0.61999 1 33240 33240 24.21 0.18939 1 89914000 + 38705 19471 25920 26412 45373 45373 0.01937027705434957 LYHAISNHL 9 Unmodified _LYHAISNHL_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5262451171875 3 356.525936 1066.55598 1.4556 0.00051894 -0.11581 -4.1291E-05 1.3397 0.00047765 356.5259402747047 34.452 0.38873 30.357 30.16 30.549 -4.0951 30 22 2 0 0 0 0.0088174 1 19869 19869 83.429 54.934 1 18830000 38706 4160 25921 26413 45374 45374 0.025362785373545194 LYHAISNHL 9 Unmodified _LYHAISNHL_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 356.525936 1066.55598 0.52514 0.00018723 0.33419 0.00011915 0.85933 0.00030637 356.52609856741776 30.459 0.2414 30.379 30.28 30.521 -0.080429 0.037267 2.4747E-05 NaN 83.429 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2681700 38707 4160 25921 26413 0.025362785373545194 LYHAISNHL 9 Unmodified _LYHAISNHL_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 356.525936 1066.55598 -0.16382 -5.8405E-05 0.60281 0.00021492 0.43899 0.00015651 356.52603024922064 30.258 0.16424 30.288 30.182 30.346 0.030106 -0.05315 0.00031205 NaN 83.429 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 888060 38708 4160 25921 26413 0.025362785373545194 LYHCVTLWP 9 Unmodified _LYHCVTLWP_ 0 0 0 REV__ENST00000306167.11_1_X:149761076-149807431:+|nuORF REV__ENST00000306167.11_1_X:149761076-149807431:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2890014648438 2 566.28642 1130.55829 NaN NaN NaN NaN NaN NaN NaN 84.371 1 83.871 83.371 84.371 -0.49961 0 0 0 0.6032 1 46170 46170 12.532 0 1 + 38709 25374 25922 26414 45375 45375 -0.0017700904918456217 LYHDIFSRL 9 Unmodified _LYHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.54541015625 3 388.545108 1162.61349 0.023576 9.1603E-06 0.30328 0.00011784 0.32686 0.000127 388.5451916507128 56.922 0.27837 56.436 56.265 56.543 -0.48554 37 12 4 0 0 0 0.39179 1 30893 30893 12.856 3.0917 1 6644900 38710 721 25923 26415 45376 45376 0.03869120742956511 LYHDIFSRL 9 Unmodified _LYHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3140258789062 2 582.314023 1162.61349 0.79614 0.0004636 0.17462 0.00010169 0.97076 0.00056529 582.3141545058565 56.595 0.55508 56.526 56.4 56.955 -0.068737 40 27 2 0 0 0 0.033747 1 30771 30771 66.457 44.71 1 22697000 38711 721 25923 26415 45377 45377 0.03869120742956511 LYHDIFSRL 9 Unmodified _LYHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5455932617188 3 388.545108 1162.61349 NaN NaN NaN NaN NaN NaN NaN 56.892 1 56.823 56.323 57.323 -0.068737 0 0 0 0.74422 1 30957 30957 7.9454 3.0484 1 38712 721 25923 26415 45378 45378 0.03869120742956511 LYHDIFSRL 9 Unmodified _LYHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5457153320312 3 388.545108 1162.61349 1.15 0.00044682 -0.74291 -0.00028865 0.40707 0.00015816 388.5451008655561 84.146 0.92139 77.97 77.459 78.381 -6.1757 170 50 4 0 0 0 0.012586 5 55328 55068;55202;55328;55450;55590 73.196 40.299 1 91745000 38713 721 25923 26415 45379;45380;45381;45382;45383 45381 0.03869120742956511 LYHDIFSRL 9 Unmodified _LYHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.31494140625 2 582.314023 1162.61349 0.79488 0.00046287 -0.46826 -0.00027267 0.32662 0.00019019 582.313884516302 84.193 0.5645 78.018 77.625 78.19 -6.1757 53 30 2 0 0 0 0.011211 2 55219 55219;55340 93.166 40.898 1 26568000 38714 721 25923 26415 45384;45385 45384 0.03869120742956511 LYHEKPLVF 9 Unmodified _LYHEKPLVF_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5504455566406 3 382.54997 1144.62808 1.3078 0.0005003 0.66291 0.00025359 1.9707 0.00075389 382.55018935460794 49.792 0.36075 44.253 44.079 44.439 -5.5391 57 22 3 0 0 0 0.091924 2 31076 31076;31216 34.932 22.691 1 53804000 38715 5388 25924 26416 45386;45387 45386 0.061551928911057985 LYHEKPLVF 9 Unmodified _LYHEKPLVF_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.3219604492188 2 573.321317 1144.62808 0.94229 0.00054023 0.054101 3.1017E-05 0.99639 0.00057125 573.3210851061172 49.755 0.34537 44.216 44.079 44.424 -5.5391 46 21 3 0 0 0 0.065007 1 31167 31167 51.415 26.741 1 20205000 38716 5388 25924 26416 45388 45388 0.061551928911057985 LYHEQLLA 8 Unmodified _LYHEQLLA_ 0 0 0 nc|ENSG00000162852|Q6PJW8-3|CNST;ENST00000483271.1_1_1:246729833-246797398:+|nuORF;nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST nc|ENSG00000162852|Q6PJW8-3|CNST nc|ENSG00000162852|Q6PJW8-3|CNST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7692260742188 2 493.768917 985.523281 0.29569 0.000146 -0.32669 -0.00016131 -0.031001 -1.5307E-05 493.7687087275286 54.812 0.35754 54.345 54.182 54.54 -0.46664 58 17 5 0 0 0 0.50673 1 29766 29766 34.102 0 1 58105000 38717 6921 25925 26417 45389 45389 0.0299407141451411 LYHESWNTEE 10 Unmodified _LYHESWNTEE_ 0 0 0 ENSG00000061794|ENST00000081029|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 ENSG00000061794|ENST00000081029|MRPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.2811889648438 2 654.280574 1306.5466 0.62454 0.00040862 -0.39932 -0.00026127 0.22521 0.00014735 654.2805740231202 67.586 0.3734 67.604 67.414 67.787 0.018028 59 18 4 0 0 0 0.20962 1 37068 37068 32.786 10.049 1 31593000 38718 841 25926 26418 45390 45390 -0.09441579329450178 LYHEVDSNVGM 11 Unmodified _LYHEVDSNVGM_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS AL20221201_MKP_PDAC_01 4 632.2882080078125 2 632.287345 1262.56014 NaN NaN NaN NaN NaN NaN NaN 92.783 1 86.608 86.108 87.108 -6.1757 0 0 0 0.33438 1 61369 61369 31.268 0.6318 1 + 38719 19045 25927 26419 45391 45391 -0.06064044821891912 LYHGICNYKR 10 Unmodified _LYHGICNYKR_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 MSMS AL20221201_MKP_PDAC_01 4 423.2197570800781 3 422.885247 1265.63391 NaN NaN NaN NaN NaN NaN NaN 73.55 1 67.374 66.874 67.874 -6.1757 0 0 0 0.71851 1 48096 48096 13.615 4.0709 1 + 38720 29663 25928 26420 45392 45392 0.011719681310978558 LYHKGLLKF 9 Unmodified _LYHKGLLKF_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5623779296875 3 373.56221 1117.6648 -0.21644 -8.0854E-05 1.0675 0.00039879 0.85109 0.00031794 373.56260695908657 37.131 0.41532 37.152 37.005 37.42 0.021545 48 18 4 0 0 0 0.044296 1 19667 19667 47.594 27.18 1 18812000 38721 4734;5624 25929 26421 45393 45393 0.1106748950767269 LYHKGLLKF 9 Unmodified _LYHKGLLKF_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8409423828125 2 559.839677 1117.6648 0.1918 0.00010738 0.39054 0.00021864 0.58234 0.00032602 559.8402823423112 37.13 0.14676 37.152 37.07 37.216 0.021545 10 6 2 0 0 0 0.044296 1 19715 19715 52.268 43.675 1 860990 38722 4734;5624 25929 26421 45394 45394 0.1106748950767269 LYHKGLLKF 9 Unmodified _LYHKGLLKF_ 0 0 0 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1 ENSG00000135720|ENST00000258198|DYNC1LI2;ENST00000481915.5_1_3:32574447-32611850:-|nuORF ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8391723632812 3 373.56221 1117.6648 0.64927 0.00024254 0.62002 0.00023162 1.2693 0.00047416 373.5623287813234 84.886 0.56297 78.71 78.445 79.008 -6.1757 67 32 3 0 0 0 0.091924 4 55749 55749;55777;55902;56031 34.932 19.83 1 33541000 38723 4734;5624 25929 26421 45395;45396;45397;45398 45395 0.1106748950767269 LYHKVTDYTTL 11 Unmodified _LYHKVTDYTTL_ 0 0 0 REV__nc|ENSG00000153291|O95847-2|SLC25A27 REV__nc|ENSG00000153291|O95847-2|SLC25A27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9067993164062 3 451.906482 1352.69762 0.43372 0.000196 1.111 0.00050206 1.5447 0.00069806 452.24107813375406 16.65 0.11984 16.655 16.587 16.707 0.0050564 15 6 3 0 0 0 0.71728 1 8354 8354 2.6312 0 1 1519000 + 38724 21166 25930 26422 45399 45399 0.03537607049179314 LYHKVTDYTTL 11 Unmodified _LYHKVTDYTTL_ 0 0 0 REV__nc|ENSG00000153291|O95847-2|SLC25A27 REV__nc|ENSG00000153291|O95847-2|SLC25A27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 451.906482 1352.69762 -0.26583 -0.00012013 1.1291 0.00051023 0.86322 0.00039009 451.90694058844304 16.397 0.019413 16.397 16.381 16.4 0 -0.12903 1.0574E-05 NaN 2.6312 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 427810 + 38725 21166 25930 26422 0.03537607049179314 LYHKVTDYTTL 11 Unmodified _LYHKVTDYTTL_ 0 0 0 REV__nc|ENSG00000153291|O95847-2|SLC25A27 REV__nc|ENSG00000153291|O95847-2|SLC25A27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 451.906482 1352.69762 0.43372 0.000196 1.111 0.00050206 1.5447 0.00069806 452.24107813375406 16.65 0.11984 16.655 16.587 16.707 0.0050564 0.12903 -1.3913E-05 NaN 2.6312 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1519000 + 38726 21166 25930 26422 0.03537607049179314 LYHLNMNVASH 11 Unmodified _LYHLNMNVASH_ 0 0 0 REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.8596496582031 3 433.548523 1297.62374 0.086827 3.7644E-05 0.81577 0.00035368 0.9026 0.00039132 433.5487745429816 30.207 1.1919 30.237 29.712 30.904 0.030106 106 50 3 0 0 0 0.29947 1 15552 15552 3.0723 0.98626 1 3592500 + 38727 19502 25931 26423 45400 45400 -0.013166395941198061 LYHLWYRL 8 Unmodified _LYHLWYRL_ 0 0 0 REV__ENSG00000117411|ENST00000372324|B4GALT2 REV__ENSG00000117411|ENST00000372324|B4GALT2 MSMS AL20221201_MKP_PDAC_01 4 582.32373046875 2 582.321651 1162.62875 NaN NaN NaN NaN NaN NaN NaN 84.376 1 78.2 77.7 78.7 -6.1757 0 0 0 0.73801 1 55506 55506 26.341 5.4701 1 + 38728 19103 25932 26424 45401 45401 0.053940323308097504 LYHMLLTQY 9 Unmodified _LYHMLLTQY_ 0 0 0 ENST00000507447.1_1_5:54960464-54965471:-|nuORF ENST00000507447.1_1_5:54960464-54965471:-|nuORF ENST00000507447.1_1_5:54960464-54965471:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2164611816406 3 394.538965 1180.59507 -0.077036 -3.0394E-05 0.16018 6.3196E-05 0.083141 3.2802E-05 394.5388127774617 38.173 0.26608 38.19 38.048 38.314 0.01704 21 11 2 0 0 0 0.21144 1 20266 20266 4.1895 0 1 2816800 38729 14539 25933 26425 45402 45402 0.011992427767381741 LYHNAIKTI 9 Unmodified _LYHNAIKTI_ 0 0 0 nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2100219726562 3 358.209836 1071.60768 -0.099332 -3.5582E-05 0.73771 0.00026426 0.63838 0.00022867 358.21000756173294 29.779 0.18198 29.809 29.712 29.894 0.030106 12 6 2 0 0 0 0.07087 1 15554 15554 30.703 10.289 1 2228400 38730 9458 25934 26426 45403 45403 0.07474022231281197 LYHNAIKTI 9 Unmodified _LYHNAIKTI_ 0 0 0 nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2107543945312 3 358.209836 1071.60768 1.991 0.00071319 1.7936 0.00064248 3.7846 0.0013557 358.209527683945 33.719 0.47742 29.734 29.525 30.002 -3.9853 80 26 4 0 0 0 0.13231 1 19407 19407 28.234 6.6435 1 21370000 38731 9458 25934 26426 45404 45404 0.07474022231281197 LYHNSLDEFP 10 Unmodified _LYHNSLDEFP_ 0 0 0 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.1971740722656 3 412.196144 1233.5666 NaN NaN NaN NaN NaN NaN NaN 54.379 1 53.912 53.412 54.412 -0.46664 0 0 0 0.92825 1 29465 29465 3.5871 0.26742 1 38732 3897 25935 26427 45405 45405 -0.0408378359886683 LYHNWRHAF 9 Unmodified _LYHNWRHAF_ 0 0 0 ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A ENST00000497003.5_1_2:178552959-178791632:-|nuORF ENST00000497003.5_1_2:178552959-178791632:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2092590332031 3 415.20883 1242.60466 -0.22378 -9.2914E-05 1.1053 0.00045894 0.88155 0.00036603 415.2091994876648 30.487 0.19478 30.517 30.346 30.541 0.030104 13 8 2 0 0 0 0.40476 1 15931 15931 12.241 6.5088 1 890040 38733 14390 25936 26428 45406 45406 -0.006938081028692977 LYHPMPARRSG 11 Unmodified _LYHPMPARRSG_ 0 0 0 REV__ENST00000320743.7_2_12:59313831-59314026:-|nuORF REV__ENST00000320743.7_2_12:59313831-59314026:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8946838378906 3 428.892513 1283.65571 NaN NaN NaN NaN NaN NaN NaN 40.624 1 40.629 40.129 41.129 0.0050545 0 0 0 0.93777 1 21669 21669 4.1166 0.2403 1 + 38734 25503 25937 26429 45407 45407 0.025227728796608062 LYHQHVHTL 9 Unmodified _LYHQHVHTL_ 0 0 0 ENSG00000166188|ENST00000299237|ZNF319 ENSG00000166188|ENST00000299237|ZNF319 ENSG00000166188|ENST00000299237|ZNF319 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2059936523438 3 383.205085 1146.59343 1.5584 0.00059718 -0.79612 -0.00030508 0.76226 0.0002921 383.20458931321036 20.191 0.21165 17.5 17.437 17.649 -2.6903 24 16 2 0 0 0 0.078314 1 10773 10773 38.176 20.733 1 2824600 38735 7448 25938 26430 45408 45408 0.025993698030106316 LYHRVDVIF 9 Unmodified _LYHRVDVIF_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000569448.1_1_16:8993400-8995074:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF;ENST00000569448.1_1_16:8993400-8995074:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.3260498046875 2 581.324391 1160.63423 NaN NaN NaN NaN NaN NaN NaN 81.309 1 75.134 74.634 75.634 -6.1757 0 0 0 0.068588 1 53364 53364 55.503 31.482 1 38736 9567;15457 25939 26431 45409 45409 0.06033711122586283 LYHSPAWGEL 10 Unmodified _LYHSPAWGEL_ 0 0 0 REV__ENSG00000107957|ENST00000369774|SH3PXD2A REV__ENSG00000107957|ENST00000369774|SH3PXD2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2586059570312 2 586.790381 1171.56621 0.1378 8.0863E-05 -1.1068 -0.00064944 -0.96896 -0.00056858 586.7907272979379 58.042 0.60952 52.015 51.717 52.327 -6.0275 85 33 4 0 0 0 0.52888 1 37373 37373 14.838 0 1 159780000 + 38737 18587 25940 26432 45410 45410 -0.01271158528061278 LYHSQFTYF 9 Unmodified _LYHSQFTYF_ 0 0 0 ENST00000497170.5_1_13:101795259-101997694:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2840576171875 2 603.284931 1204.55531 -0.62014 -0.00037412 -0.45851 -0.00027661 -1.0786 -0.00065073 603.2847356109359 25.316 0.29861 25.316 25.128 25.427 0 43 14 4 0 0 0 0.2143 2 13009 12914;13009 21.747 5.5975 1 14040000 38738 2045 25941 26433 45411;45412 45412 -0.03878560902330719 LYHSQFTYF 9 Unmodified _LYHSQFTYF_ 0 0 0 ENST00000497170.5_1_13:101795259-101997694:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.8613891601562 3 402.525713 1204.55531 0.18697 7.5261E-05 0.31688 0.00012755 0.50386 0.00020282 402.52557059554715 24.768 0.24065 24.766 24.61 24.851 -0.0016766 14 9 2 0 0 0 0.43463 1 12665 12665 7.1017 0 1 2706500 38739 2045 25941 26433 45413 45413 -0.03878560902330719 LYHWFPIF 8 Unmodified _LYHWFPIF_ 0 0 0 nc|ENSG00000151388|P58397-3|ADAMTS12;ENSG00000151388|ENST00000504830|ADAMTS12 nc|ENSG00000151388|P58397-3|ADAMTS12 nc|ENSG00000151388|P58397-3|ADAMTS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.790283203125 2 561.792195 1121.56984 NaN NaN NaN NaN NaN NaN NaN 88.948 1 88.444 87.944 88.944 -0.50423 0 0 0 0.97444 1 48639 48639 2.8892 0 1 38740 6110 25942 26434 45414 45414 0.013915560364466728 LYHYILSFDG 10 Unmodified _LYHYILSFDG_ 0 0 0 REV__ENST00000509280.1_1_19:54006649-54007204:+|nuORF REV__ENST00000509280.1_1_19:54006649-54007204:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.8711853027344 3 409.873001 1226.59717 NaN NaN NaN NaN NaN NaN NaN 29.157 1 25.855 25.355 26.355 -3.3016 0 0 0 0.84946 1 16343 16343 10.151 0.76745 1 + 38741 28128 25943 26435 45415 45415 -0.007060052138285755 LYIAFPNRYV 10 Unmodified _LYIAFPNRYV_ 0 0 0 REV__ENSG00000184350|ENST00000389832|MRGPRE REV__ENSG00000184350|ENST00000389832|MRGPRE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2316589355469 3 419.232641 1254.67609 -0.015795 -6.622E-06 -1.5369 -0.00064433 -1.5527 -0.00065095 419.23189087782674 16.989 0.12788 16.994 16.927 17.055 0.0050564 27 14 3 0 0 0 0.6966 1 8537 8537 1.5923 0 1 471850 + 38742 23415 25944 26436 45416 45416 0.05894266811128546 LYIAFPNRYV 10 Unmodified _LYIAFPNRYV_ 0 0 0 REV__ENSG00000184350|ENST00000389832|MRGPRE REV__ENSG00000184350|ENST00000389832|MRGPRE MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2323303222656 3 419.232641 1254.67609 1.1317 0.00047447 -1.6788 -0.00070381 -0.54706 -0.00022935 419.23200172852194 18.811 0.17849 16.189 16.126 16.304 -2.6215 17 10 2 0 0 0 0.52888 1 9927 9927 12.873 5.8355 1 3215400 + 38743 23415 25944 26436 45417 45417 0.05894266811128546 LYIAGRDQVYT 11 Unmodified _LYIAGRDQVYT_ 0 0 0 nc|ENSG00000137872|Q8NFY4-7|SEMA6D;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;ENSG00000137872|ENST00000536845|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D nc|ENSG00000137872|Q8NFY4-7|SEMA6D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.3330078125 2 649.840602 1297.66665 0.937 0.0006089 2.4299 0.001579 3.3669 0.0021879 649.8412996045271 71.657 0.10391 71.696 71.664 71.768 0.039024 5 4 2 0 0 0 0.29817 1 39487 39487 8.1555 0.54658 1 2825000 38744 4986 25945 26437 45418 45418 0.02972453734969349 LYIAISREE 9 Unmodified _LYIAISREE_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2987060546875 2 547.298039 1092.58152 -0.10855 -5.9412E-05 -0.90903 -0.00049751 -1.0176 -0.00055692 547.2973907693597 38.619 0.78978 38.332 38.071 38.861 -0.28687 126 36 5 0 0 0 0.026094 2 20467 20467;20589 57.471 1.3745 1 1408200000 + 38745 16929 25946 26438 45419;45420 45419 0.038937082691290925 LYIAISREE 9 Unmodified _LYIAISREE_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2978515625 2 547.298039 1092.58152 0.086558 4.7373E-05 -0.1177 -6.4417E-05 -0.031142 -1.7044E-05 547.2979461681234 38.285 0.53325 38.302 38.09 38.624 0.01704 93 24 6 0 0 0 0.016184 1 20285 20285 67.344 2.1088 1 192600000 + 38746 16929 25946 26438 45421 45421 0.038937082691290925 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2339477539062 3 407.899439 1220.67649 -0.85386 -0.00034829 0.66032 0.00026934 -0.19354 -7.8945E-05 407.8994538526584 30.445 0.24348 30.445 30.343 30.587 0 31 11 4 0 0 0 0.40136 1 15812 15812 18.721 3.1828 1 6706200 + 38747 16929 25947 26439 45422 45422 0.07497641740314975 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.3453369140625 2 611.34552 1220.67649 -0.69155 -0.00042278 0.21444 0.00013109 -0.47712 -0.00029168 611.3455793334238 30.46 0.14342 30.46 30.402 30.546 0 9 6 2 0 0 0 0.48505 1 15838 15838 17.113 1.8644 1 1452800 + 38748 16929 25947 26439 45423 45423 0.07497641740314975 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8999938964844 3 407.899439 1220.67649 0.58451 0.00023842 0.8281 0.00033778 1.4126 0.0005762 407.8997485877138 30.428 0.41141 30.348 30.205 30.616 -0.080429 43 15 4 0 0 0 0.13391 1 15773 15773 29.437 4.4801 1 21372000 + 38749 16929 25947 26439 45424 45424 0.07497641740314975 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8991394042969 3 407.899439 1220.67649 -0.3015 -0.00012298 1.1342 0.00046265 0.83272 0.00033967 407.89981492678254 30.222 0.27851 30.252 30.114 30.393 0.030106 26 11 3 0 0 0 0.24625 1 15772 15772 26.021 4.2212 1 3712000 + 38750 16929 25947 26439 45425 45425 0.07497641740314975 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.899439 1220.67649 -0.85386 -0.00034829 0.66032 0.00026934 -0.19354 -7.8945E-05 407.8994538526584 30.445 0.24348 30.445 30.343 30.587 0 0.096872 -0.00029805 NaN 29.437 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6706200 + 38751 16929 25947 26439 0.07497641740314975 LYIAISREEK 10 Unmodified _LYIAISREEK_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 407.899439 1220.67649 -0.3015 -0.00012298 1.1342 0.00046265 0.83272 0.00033967 407.89981492678254 30.222 0.27851 30.252 30.114 30.393 0.030106 -0.096434 0.00028187 NaN 29.437 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3712000 + 38752 16929 25947 26439 0.07497641740314975 LYIANVAHF 9 Unmodified _LYIANVAHF_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.759033203125 2 524.284734 1046.55492 0.53643 0.00028124 -1.2475 -0.00065404 -0.71106 -0.0003728 524.2853788869517 64.192 0.18655 63.707 63.572 63.758 -0.48512 14 8 2 0 0 0 0.19613 1 35024 35024 12.532 3.9383 1 579760 38753 4657 25948 26440 45426 45426 0.03350064168466815 LYIANVAHF 9 Unmodified _LYIANVAHF_ 0 0 0 nc|ENSG00000134955|Q8TED4-3|SLC37A2;ENST00000526405.5_1_11:124933263-124955028:+|nuORF;ENSG00000134955|ENST00000403796|SLC37A2;nc|ENSG00000134955|Q8TED4-2|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 nc|ENSG00000134955|Q8TED4-3|SLC37A2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.284734 1046.55492 0.78924 0.00041379 -0.89696 -0.00047026 -0.10772 -5.6475E-05 524.7855005376659 63.752 0.15351 63.741 63.649 63.803 -0.010532 0.017284 0.00010168 NaN 18.135 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1184100 38754 4657 25948 26440 0.03350064168466815 LYIAREGKEE 10 Unmodified _LYIAREGKEE_ 0 0 0 nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS nc|ENSG00000081760|Q86V21-2|AACS nc|ENSG00000081760|Q86V21-2|AACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.319091796875 2 604.319502 1206.62445 -0.17271 -0.00010437 0.65808 0.00039769 0.48537 0.00029332 604.3198528168848 37.655 0.45443 37.655 37.493 37.947 0 59 22 4 0 0 0 0.020813 2 20005 20005;20121 74.929 22.661 1 27334000 38755 1329 25949 26441 45427;45428 45427 0.02940478326581797 LYIAREGKEE 10 Unmodified _LYIAREGKEE_ 0 0 0 nc|ENSG00000081760|Q86V21-2|AACS;ENSG00000081760|ENST00000316519|AACS nc|ENSG00000081760|Q86V21-2|AACS nc|ENSG00000081760|Q86V21-2|AACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3177490234375 2 604.319502 1206.62445 -0.00066309 -4.0072E-07 -0.31129 -0.00018812 -0.31195 -0.00018852 604.3192951093624 37.922 0.35764 37.651 37.485 37.842 -0.27133 42 17 4 0 0 0 0.035736 1 19919 19919 65.235 12.967 1 15359000 38756 1329 25949 26441 45429 45429 0.02940478326581797 LYICDYHKN 9 Unmodified _LYICDYHKN_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7761840820312 2 584.776416 1167.53828 1.9656 0.0011494 -1.4581 -0.00085264 0.50752 0.00029679 585.2774969495583 92.708 0.28289 92.739 92.599 92.881 0.030197 17 10 2 0 0 0 0.1773 1 51592 51592 25.399 0 1 3315700 38757 7139 25950 26442 45430 45430 -0.0387880477978797 LYIDEGKEK 9 Unmodified _LYIDEGKEK_ 0 0 0 REV__ENST00000287957.3_1_7:92078120-92078186:+|nuORF REV__ENST00000287957.3_1_7:92078120-92078186:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7914428710938 2 547.790047 1093.56554 0.074815 4.0983E-05 0.19652 0.00010765 0.27134 0.00014864 547.7900240301573 40.361 0.33693 40.361 40.192 40.529 0 39 16 3 0 0 0 0.070838 1 21648 21648 39.957 3.8303 1 32503000 + 38758 25230 25951 26443 45431 45431 0.022500020322468117 LYIDEGKEK 9 Unmodified _LYIDEGKEK_ 0 0 0 REV__ENST00000287957.3_1_7:92078120-92078186:+|nuORF REV__ENST00000287957.3_1_7:92078120-92078186:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.790047 1093.56554 0.54087 0.00029628 -0.14713 -8.0595E-05 0.39375 0.00021569 547.7898462569974 40.658 0.24797 40.355 40.234 40.482 -0.30304 -0.0028233 -0.0002627 NaN 39.957 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2697900 + 38759 25230 25951 26443 0.022500020322468117 LYIDFGGKF 9 Unmodified _LYIDFGGKF_ 0 0 0 ENST00000522987.1_1_8:80870573-80942483:-|nuORF;ENSG00000147586|ENST00000276585|MRPS28 ENST00000522987.1_1_8:80870573-80942483:-|nuORF ENST00000522987.1_1_8:80870573-80942483:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.278076171875 2 530.279118 1058.54368 0.75897 0.00040247 -0.23067 -0.00012232 0.5283 0.00028015 530.2786101313659 82.83 1.0273 76.654 76.339 77.366 -6.1757 80 56 2 0 0 0 0.07087 1 54680 54680 39.95 15.929 1 33875000 38760 5864 25952 26444 45432 45432 0.01675242074338712 LYIDRPLPYL 10 Unmodified _LYIDRPLPYL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A nc|ENSG00000172661|Q9Y4E1-5|WASHC2C nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.8624877929688 2 631.860806 1261.70706 0.16362 0.00010338 2.8731 0.0018154 3.0367 0.0019188 631.8629551565872 76.867 0.23384 76.917 76.776 77.01 0.05011 22 9 3 0 0 0 0.1887 1 42411 42411 40.239 15.248 1 3347200 38761 8240 25953 26445 45433 45433 0.08667420125379977 LYIDRPLPYL 10 Unmodified _LYIDRPLPYL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A nc|ENSG00000172661|Q9Y4E1-5|WASHC2C nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MSMS AL20221201_MKP_PDAC_01 4 631.8615112304688 2 631.860806 1261.70706 NaN NaN NaN NaN NaN NaN NaN 92.949 1 86.773 86.273 87.273 -6.1757 0 0 0 0.093753 1 61491 61491 43.982 16.759 1 38762 8240 25953 26445 45434 45434 0.08667420125379977 LYIDRPLPYL 10 Unmodified _LYIDRPLPYL_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000099290|ENST00000282633|WASHC2A nc|ENSG00000172661|Q9Y4E1-5|WASHC2C nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MSMS AL20221201_MKP_PDAC_01 4 631.8604736328125 2 631.860806 1261.70706 NaN NaN NaN NaN NaN NaN NaN 93.155 1 86.98 86.48 87.48 -6.1757 0 0 0 0.0573 1 61644 61644 47.732 17.891 1 38763 8240 25953 26445 45435 45435 0.08667420125379977 LYIDWTENYKH 11 Unmodified _LYIDWTENYKH_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.3562622070312 2 741.356616 1480.69868 NaN NaN NaN NaN NaN NaN NaN 44.836 1 44.836 44.336 45.336 0 0 0 0 0.14274 1 24413 24413 43.772 26.659 1 + 38764 186 25954 26446 45436 45436 -0.02244178581918277 LYIDYYYLL 9 Unmodified _LYIDYYYLL_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5507507324219 3 413.549636 1237.62708 0.34699 0.0001435 1.058 0.00043753 1.405 0.00058103 413.5505402346536 22.993 0.21621 20.214 20.089 20.305 -2.7784 25 12 3 0 0 0 0.40476 1 12376 12376 12.241 0.06591 1 4883100 + 38765 18886 25955 26447 45437 45437 0.017769337315030498 LYIDYYYLL 9 Unmodified _LYIDYYYLL_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 413.549636 1237.62708 0.34699 0.0001435 1.058 0.00043753 1.405 0.00058103 413.5505402346536 22.993 0.21621 20.214 20.089 20.305 -2.7784 0.083677 -0.00097882 NaN 12.241 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4883100 + 38766 18886 25955 26447 0.017769337315030498 LYIENQFFI 9 Unmodified _LYIENQFFI_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2 nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8104248046875 2 593.810782 1185.60701 0.97537 0.00057918 -0.65377 -0.00038821 0.3216 0.00019097 593.8098063886957 100.21 0.13104 94.034 93.957 94.088 -6.1757 11 7 2 0 0 0 0.062454 1 66968 66968 46.021 0 1 12880000 38767 4122 25956 26448 45438 45438 0.02163182791559848 LYIGGLSKN 9 Unmodified _LYIGGLSKN_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7767028808594 2 482.776742 963.538931 0.58462 0.00028224 -0.9156 -0.00044203 -0.33098 -0.00015979 482.7763001637412 36.252 0.20175 36.252 36.186 36.388 0 16 9 2 0 0 0 0.042911 1 19237 19237 48.346 7.8973 1 3274500 38768 2700 25957 26449 45439 45439 0.05570357931560466 LYIGGLSKN 9 Unmodified _LYIGGLSKN_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7762451171875 2 482.776742 963.538931 -0.34824 -0.00016812 0.12433 6.0023E-05 -0.22391 -0.0001081 482.77679253608966 36.468 0.35665 36.218 36.026 36.383 -0.2497 29 16 2 0 0 0 0.010877 1 19105 19105 77.984 13.748 1 8128300 38769 2700 25957 26449 45440 45440 0.05570357931560466 LYIGGLSKN 9 Unmodified _LYIGGLSKN_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 nc|ENSG00000110076|Q9P2S2-2|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.7766418457031 2 482.776742 963.538931 -0.075399 -3.6401E-05 0.23623 0.00011405 0.16083 7.7647E-05 482.7767756002136 36.142 0.24517 36.167 36.053 36.298 0.024971 21 10 3 0 0 0 0.042911 1 19153 19153 48.346 10.372 1 2388000 38770 2700 25957 26449 45441 45441 0.05570357931560466 LYIGHLTTL 9 Unmodified _LYIGHLTTL_ 0 0 0 ENSG00000082805|ENST00000360905|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;ENST00000542302.6_1_12:1519571-1599393:+|nuORF ENSG00000082805|ENST00000360905|ERC1 ENSG00000082805|ENST00000360905|ERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8002319335938 2 515.800217 1029.58588 1.0471 0.00054008 0.57928 0.00029879 1.6264 0.00083888 515.8003600469381 63.776 0.68219 63.765 63.532 64.214 -0.010529 81 33 3 0 0 0 0.0086629 1 34837 34837 101.72 31.006 1 12675000 38771 1353 25958 26450 45442 45442 0.07227217482704873 LYIGHRLLM 9 Unmodified _LYIGHRLLM_ 0 0 0 REV__ENST00000357321.8_1_10:74874190-74879792:+|nuORF REV__ENST00000357321.8_1_10:74874190-74879792:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3262939453125 2 558.323337 1114.63212 1.4811 0.00082693 4.3941 0.0024533 5.8752 0.0032803 558.327798354535 100.14 0.2653 93.96 93.838 94.103 -6.1757 53 16 5 0 0 0 0.28047 1 66863 66863 18.135 1.9859 1 156620000 + 38772 25848 25959 26451 45443 45443 0.07938959113130295 LYIGNLTWW 9 Unmodified _LYIGNLTWW_ 0 0 0 ENST00000550987.5_1_12:69633426-69648902:+|nuORF;ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6 ENST00000550987.5_1_12:69633426-69648902:+|nuORF ENST00000550987.5_1_12:69633426-69648902:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3043212890625 2 583.305667 1164.59678 0.92965 0.00054227 -0.74729 -0.0004359 0.18236 0.00010637 583.3051172730339 101.33 0.10113 95.154 95.091 95.192 -6.1757 10 5 2 0 0 0 0.28047 1 67994 67994 18.135 2.3668 1 22667000 38773 2798 25960 26452 45444 45444 0.021066198569769767 LYIGTHCEI 9 Carbamidomethyl (C) _LYIGTHC(Carbamidomethyl (C))EI_ LYIGTHC(1)EI LYIGTHC(74)EI 0 1 0 ENSG00000083857|ENST00000441802|FAT1;ENST00000507662.1_1_4:187518409-187519256:-|nuORF ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2713012695312 2 553.270967 1104.52738 0.52047 0.00028796 0.55699 0.00030817 1.0775 0.00059613 553.2712336002111 51.751 0.40197 46.016 45.778 46.18 -5.7345 48 25 3 0 0 0 0.012148 1 32599 32599 74.423 38.379 1 113080000 38774 1378 25961 26453 45445 45445 128 -0.02070207154088166 LYIGWDKHYGF 11 Unmodified _LYIGWDKHYGF_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.8995666503906 3 466.89955 1397.67682 0.89782 0.00041919 -0.24343 -0.00011366 0.65439 0.00030553 466.89939814358485 64.191 0.36163 64.18 63.996 64.358 -0.010536 65 17 5 0 0 0 0.21511 1 35129 35129 30.431 25.029 1 57166000 38775 654 25962 26454 45446 45446 -0.006109385398303857 LYIGWDKHYGF 11 Unmodified _LYIGWDKHYGF_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2346496582031 3 466.89955 1397.67682 0.73654 0.00034389 -0.59571 -0.00027814 0.14084 6.5756E-05 466.89916117411764 85.788 0.49476 79.612 79.394 79.889 -6.1757 87 27 4 0 0 0 0.16515 2 56465 56465;56594 28.181 21.558 1 73206000 38776 654 25962 26454 45447;45448 45447 -0.006109385398303857 LYIGWDKHYGF 11 Unmodified _LYIGWDKHYGF_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.8450927734375 2 699.845687 1397.67682 0.34364 0.00024049 -1.8803 -0.0013159 -1.5367 -0.0010754 699.843359169559 85.751 0.29792 79.576 79.479 79.777 -6.1757 38 16 3 0 0 0 0.0008837 1 56491 56491 84.522 47.448 1 19849000 38777 654 25962 26454 45449 45449 -0.006109385398303857 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7840881347656 2 503.782025 1005.5495 0.57014 0.00028723 -0.27062 -0.00013633 0.29952 0.00015089 503.7817939023697 38.161 0.31552 38.161 37.947 38.263 0 58 16 5 0 0 0 0.26159 2 20289 20289;20405 60.39 12.044 1 100260000 + 38778 21261 25963 26455 45450;45451 45450 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2727661132812 2 503.782025 1005.5495 0.57014 0.00028723 -0.27062 -0.00013633 0.29952 0.00015089 503.7817939023697 38.161 0.31552 38.161 37.947 38.263 0 58 16 5 0 0 0 8.7369 1 20266 20266 11.64 0.81637 1 100260000 + 38779 21261 25963 26455 45452 45452 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7824096679688 2 503.782025 1005.5495 -0.45842 -0.00023094 0.83603 0.00042118 0.37761 0.00019023 503.78262915072565 38.904 0.30566 38.618 38.435 38.741 -0.28687 35 13 4 0 0 0 0.23628 1 20504 20504 64.236 12.607 1 8659600 + 38780 21261 25963 26455 45453 45453 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7815856933594 2 503.782025 1005.5495 0.073114 3.6833E-05 0.68228 0.00034372 0.75539 0.00038055 503.78227480387113 38.005 0.26949 38.022 37.881 38.151 0.01704 26 12 3 0 0 0 0.3408 1 20190 20190 50.855 2.5092 1 2789900 + 38781 21261 25963 26455 45454 45454 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.782025 1005.5495 -0.45842 -0.00023094 0.83603 0.00042118 0.37761 0.00019023 503.78262915072565 38.904 0.30566 38.618 38.435 38.741 -0.28687 -0.016344 2.839E-05 NaN 64.236 35 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8659600 + 38782 21261 25963 26455 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.782025 1005.5495 -0.432 -0.00021764 1.7035 0.00085821 1.2715 0.00064058 503.7827568947223 38.374 0.33186 38.087 37.93 38.262 -0.28687 0.032795 0.00036411 NaN 50.855 64 14 6 NaN NaN NaN NaN 0 NaN NaN 0 24344000 + 38783 21261 25963 26455 0.046943405859906306 LYIINEKN 8 Unmodified _LYIINEKN_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.782025 1005.5495 0.073114 3.6833E-05 0.68228 0.00034372 0.75539 0.00038055 503.78227480387113 38.005 0.26949 38.022 37.881 38.151 0.01704 -0.032795 -0.00066488 NaN 50.855 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2789900 + 38784 21261 25963 26455 0.046943405859906306 LYIIQNNSF 9 Unmodified _LYIIQNNSF_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2942504882812 2 556.292756 1110.57096 0.83322 0.00046352 -0.39075 -0.00021737 0.44247 0.00024614 556.2930815125524 67.844 0.28688 67.361 67.189 67.475 -0.48219 24 12 3 0 0 0 0.16776 1 37057 37057 26.341 0.94196 1 6587900 38785 1358 25964 26456 45455 45455 0.02009725614720992 LYIIQNNSF 9 Unmodified _LYIIQNNSF_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2926635742188 2 556.292756 1110.57096 0.60165 0.00033469 -0.95216 -0.00052968 -0.35051 -0.00019499 556.2927909070137 67.371 0.27702 67.389 67.197 67.474 0.018028 18 13 2 0 0 0 0.18465 1 36982 36982 24.674 6.5389 1 4807400 38786 1358 25964 26456 45456 45456 0.02009725614720992 LYIIQNNSF 9 Unmodified _LYIIQNNSF_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.292724609375 2 556.292756 1110.57096 1.105 0.0006147 -0.62625 -0.00034838 0.47874 0.00026632 556.2924406134488 74.79 0.36441 68.614 68.437 68.801 -6.1757 33 18 2 0 0 0 0.06187 1 48973 48973 42.095 9.7891 1 27065000 38787 1358 25964 26456 45457 45457 0.02009725614720992 LYIKEGKKE 9 Unmodified _LYIKEGKKE_ 0 0 0 REV__nc|ENSG00000135709|O60268-2|KIAA0513 REV__nc|ENSG00000135709|O60268-2|KIAA0513 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8849792480469 3 369.88513 1106.63356 0.48197 0.00017827 0.49641 0.00018361 0.97837 0.00036189 369.88486102863686 30.676 0.19935 30.573 30.419 30.618 -0.10269 12 7 2 0 0 0 0.58822 1 15942 15942 2.086 0 1 801810 + 38788 20092 25965 26457 45458 45458 0.08450871682907746 LYIKEGKKE 9 Unmodified _LYIKEGKKE_ 0 0 0 REV__nc|ENSG00000135709|O60268-2|KIAA0513 REV__nc|ENSG00000135709|O60268-2|KIAA0513 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.88513 1106.63356 0.48197 0.00017827 0.49641 0.00018361 0.97837 0.00036189 369.88486102863686 30.676 0.19935 30.573 30.419 30.618 -0.10269 0 0 NaN 2.086 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 801810 + 38789 20092 25965 26457 0.08450871682907746 LYIKNGQGF 9 Unmodified _LYIKNGQGF_ 0 0 0 ENSG00000181467|ENST00000323534|RAP2B;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C ENSG00000181467|ENST00000323534|RAP2B ENSG00000181467|ENST00000323534|RAP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2828979492188 2 520.282192 1038.54983 0.10648 5.5402E-05 0.79575 0.00041401 0.90223 0.00046941 520.2823783654982 39.975 0.19032 39.678 39.592 39.782 -0.29716 14 8 2 0 0 0 0.052168 1 21121 21121 44.407 19.733 1 2285600 38790 3728 25966 26458 45459 45459 0.032097603058673485 LYIKNGQGF 9 Unmodified _LYIKNGQGF_ 0 0 0 ENSG00000181467|ENST00000323534|RAP2B;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C ENSG00000181467|ENST00000323534|RAP2B ENSG00000181467|ENST00000323534|RAP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7841186523438 2 520.282192 1038.54983 0.69728 0.00036278 -0.2149 -0.00011181 0.48238 0.00025097 520.2818582347954 44.653 0.32743 39.801 39.648 39.975 -4.852 41 27 2 0 0 0 0.010877 2 27239 27239;27395 77.984 25.716 1 12799000 38791 3728 25966 26458 45460;45461 45460 0.032097603058673485 LYIKNGQGF 9 Unmodified _LYIKNGQGF_ 0 0 0 ENSG00000181467|ENST00000323534|RAP2B;ENSG00000125249|ENST00000245304|RAP2A;ENSG00000123728|ENST00000370874|RAP2C ENSG00000181467|ENST00000323534|RAP2B ENSG00000181467|ENST00000323534|RAP2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.282192 1038.54983 0.28422 0.00014788 0.42251 0.00021982 0.70673 0.0003677 520.2822860454996 39.625 0.14525 39.637 39.571 39.716 0.011452 -0.068427 0.00016357 NaN 77.984 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 819050 38792 3728 25966 26458 0.032097603058673485 LYILTGHQSTY 11 Unmodified _LYILTGHQSTY_ 0 0 0 nc|ENSG00000168067|Q12851-2|MAP4K2;ENSG00000168067|ENST00000294066|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8381958007812 2 648.335153 1294.65575 0.93593 0.0006068 2.1642 0.0014031 3.1001 0.0020099 648.3368199628717 48.535 0.14951 43.139 43.054 43.203 -5.3961 11 8 2 0 0 0 0.15156 1 30244 30244 36.506 5.2379 1 11347000 38793 7714 25967 26459 45462 45462 0.020210513606571112 LYIMKLNV 8 Unmodified _LYIMKLNV_ 0 0 0 REV__ENST00000287912.7_1_7:155437535-155471332:+|nuORF REV__ENST00000287912.7_1_7:155437535-155471332:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.2954711914062 2 497.293714 992.572874 NaN NaN NaN NaN NaN NaN NaN 39.462 1 35.011 34.511 35.511 -4.4509 0 0 0 0.44807 1 23421 23421 46.921 8.9469 1 + 38794 25228 25968 26460 45463 45463 0.07629063098954703 LYINAGFDI 9 Unmodified _LYINAGFDI_ 0 0 0 REV__nc|ENSG00000198881|Q8WXK4|ASB12 REV__nc|ENSG00000198881|Q8WXK4|ASB12 MSMS AL20221201_MKP_PDAC_01 4 513.2672729492188 2 513.26875 1024.52295 NaN NaN NaN NaN NaN NaN NaN 78.307 1 72.131 71.631 72.631 -6.1757 0 0 0 0.074615 1 51251 51251 49.933 0 1 + 38795 24089 25969 26461 45464 45464 0.011666516946661432 LYINKANIW 9 Unmodified _LYINKANIW_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8222045898438 2 567.818941 1133.62333 0.52293 0.00029693 -1.4927 -0.0008476 -0.96979 -0.00055067 568.3191933997919 59.217 0.24265 59.164 59.03 59.273 -0.053059 27 11 4 0 0 0 0.025842 1 32262 32262 74.423 28.402 1 4740800 38796 1607 25970 26462 45465 45465 0.06186308748328884 LYINMKSLVSW 11 Oxidation (M) _LYINM(Oxidation (M))KSLVSW_ LYINM(1)KSLVSW LYINM(63)KSLVSW 0 0 1 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.3619995117188 2 685.362856 1368.71116 0.48189 0.00033027 -0.69722 -0.00047785 -0.21532 -0.00014757 685.3620053222394 70.042 0.3448 70.073 69.864 70.209 0.030914 42 17 3 0 0 0 0.014658 1 38501 38501 62.869 46.719 1 10494000 38797 1675 25971 26463 45466 45466 282 0.04155141556771014 LYINMKSLVSW 11 Unmodified _LYINMKSLVSW_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.3651123046875 2 677.365398 1352.71624 0.12261 8.3049E-05 -0.028804 -1.9511E-05 0.093801 6.3538E-05 677.3655179122966 98.975 0.16207 92.8 92.716 92.878 -6.1757 33 10 4 0 0 0 2.0128E-43 1 65753 65753 185.27 135.34 1 409000000 38798 1675 25971 26464 45467 45467 0.05399445419379845 LYINSIHDS 9 Unmodified _LYINSIHDS_ 0 0 0 ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2672729492188 2 531.266739 1060.51892 0.44777 0.00023788 1.8209 0.00096738 2.2687 0.0012053 531.2669745943731 84.045 0.6475 83.546 83.217 83.864 -0.49961 67 27 4 0 0 0 0.070838 1 46058 46058 39.957 3.8303 1 13107000 38799 8464 25972 26465 45468 45468 -0.008914377990549838 LYIPIFSTF 9 Unmodified _LYIPIFSTF_ 0 0 0 ENSG00000150712|ENST00000382142|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 ENSG00000150712|ENST00000382142|MTMR12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8051147460938 2 550.804968 1099.59538 0.73624 0.00040552 -0.71751 -0.00039521 0.018733 1.0318E-05 550.8046366696209 102.02 0.097237 95.84 95.78 95.877 -6.1757 9 4 3 0 0 0 0.039985 1 68482 68482 67.035 17.366 1 12214000 38800 6069 25973 26466 45469 45469 0.04956985768217237 LYIPNTRTL 9 Unmodified _LYIPNTRTL_ 0 0 0 nc|ENSG00000204991|Q8WWL2-4|SPIRE2;nc|ENSG00000204991|Q8WWL2-3|SPIRE2;nc|ENSG00000204991|Q8WWL2-2|SPIRE2;ENST00000569108.5_1_16:89916567-89936677:+|nuORF;ENSG00000204991|ENST00000378247|SPIRE2 nc|ENSG00000204991|Q8WWL2-4|SPIRE2 nc|ENSG00000204991|Q8WWL2-4|SPIRE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.81689453125 2 545.816399 1089.61824 0.10177 5.5546E-05 -1.2178 -0.00066469 -1.116 -0.00060914 545.8167461570144 53.197 0.26044 53.134 53.024 53.284 -0.063423 20 12 2 0 0 0 0.2324 1 28851 28851 20.415 3.3016 1 2032000 38801 10342 25974 26467 45470 45470 0.07702004885732094 LYIPQDEEEG 10 Unmodified _LYIPQDEEEG_ 0 0 0 REV__ENSG00000117691|ENST00000366988|NENF REV__ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1831970214844 3 398.183793 1191.52955 -0.00020072 -7.9924E-08 0.066153 2.6341E-05 0.065952 2.6261E-05 398.1839609123536 46.839 0.36629 46.839 46.656 47.022 0 56 17 5 0 0 0 0.66569 1 25708 25708 3.5871 0.74377 1 28944000 + 38802 19122 25975 26468 45471 45471 -0.05855499935296393 LYIPQDEEEG 10 Unmodified _LYIPQDEEEG_ 0 0 0 REV__ENSG00000117691|ENST00000366988|NENF REV__ENSG00000117691|ENST00000366988|NENF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1841125488281 3 398.183793 1191.52955 0.70728 0.00028163 -0.22642 -9.0158E-05 0.48086 0.00019147 398.18396454515363 47.142 0.29385 46.804 46.659 46.953 -0.33794 50 14 5 0 0 0 0.63399 1 25243 25243 5.4027 0.68679 1 35054000 + 38803 19122 25975 26468 45472 45472 -0.05855499935296393 LYIPVVKPL 9 Unmodified _LYIPVVKPL_ 0 0 0 ENSG00000229894|ENST00000505354|GK3 ENSG00000229894|ENST00000505354|GK3 ENSG00000229894|ENST00000505354|GK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7609252929688 2 521.338978 1040.6634 0.75496 0.00039359 -0.62428 -0.00032546 0.13068 6.8129E-05 521.8402472535367 93.643 0.26717 87.468 87.303 87.57 -6.1757 23 15 2 0 0 0 0.20528 1 61906 61906 8.5933 0.68312 1 7588400 38804 10609 25976 26469 45473 45473 0.14469855418906263 LYIQTDHLFF 10 Unmodified _LYIQTDHLFF_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8367919921875 2 648.834788 1295.65502 1.1881 0.00077091 0.72158 0.00046818 1.9097 0.0012391 648.8351081859967 98.037 0.29879 91.862 91.687 91.985 -6.1757 40 18 3 0 0 0 0.0057332 1 64930 64930 96.367 60.24 1 57339000 38805 4983;12784 25977 26470 45474 45474 0.019022567116053324 LYIRLDGIFL 10 Unmodified _LYIRLDGIFL_ 0 0 0 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22 ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8658447265625 2 611.863349 1221.71214 4.4021 0.0026935 -0.020358 -1.2456E-05 4.3818 0.002681 611.8631314382883 98.846 0.1152 98.818 98.776 98.891 -0.028282 6 3 2 0 0 0 0.42143 1 54929 54929 20.415 6.5085 1 2841300 38806 339 25978 26471 45475 45475 0.11015723987975434 LYISEAEGLKF 11 Unmodified _LYISEAEGLKF_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3390502929688 2 635.339904 1268.66525 -0.28452 -0.00018076 1.0999 0.00069882 0.81539 0.00051805 635.3406597440691 69.327 0.27615 68.847 68.697 68.973 -0.48009 25 11 3 0 0 0 0.45186 1 37881 37881 28.234 18.16 1 1992700 38807 4953 25979 26472 45476 45476 0.04166819646161457 LYITDSSLM 9 Unmodified _LYITDSSLM_ 0 0 0 REV__ENST00000515845.5_2_5:102465128-102465254:+|nuORF REV__ENST00000515845.5_2_5:102465128-102465254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7607421875 2 521.759901 1041.50525 0.40443 0.00021102 -0.4096 -0.00021371 -0.0051674 -2.6962E-06 521.7596176306142 85.42 0.78549 84.919 84.661 85.446 -0.5015 184 56 4 0 0 0 0.14602 1 46656 46656 28.487 5.3384 1 52728000 + 38808 28223 25980 26473 45477 45477 -0.01384431622500415 LYITEPKTI 9 Unmodified _LYITEPKTI_ 0 0 0 ENST00000490165.5_1_X:152728086-152735946:-|nuORF;ENST00000464993.1_1_X:152722593-152735946:-|nuORF;nc|ENSG00000213397|Q99871-3|HAUS7;ENSG00000213397|ENST00000370211|HAUS7;nc|ENSG00000213397|Q99871-2|HAUS7 ENST00000490165.5_1_X:152728086-152735946:-|nuORF ENST00000490165.5_1_X:152728086-152735946:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.839111328125 2 539.313158 1076.61176 0.66478 0.00035853 0.40049 0.00021599 1.0653 0.00057452 539.3133738133668 50.669 0.22601 50.256 50.132 50.358 -0.41351 19 10 2 0 0 0 0.18118 1 27284 27284 19.257 6.7254 1 2239700 38809 10433 25981 26474 45478 45478 0.07652066934338109 LYITNVDHL 9 Unmodified _LYITNVDHL_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2918090820312 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 56.137 1 56.137 55.637 56.637 0 0 0 0 0.027645 1 31215 31215 69.105 32.978 1 38810 6691 25982 26475 45479 45479 0.031137256147076187 LYITNVDHL 9 Unmodified _LYITNVDHL_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2931518554688 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 56.326 1 56.326 55.826 56.826 0 0 0 0 0.20153 1 31326 31326 30.637 14.789 1 38811 6691 25982 26475 45480 45480 0.031137256147076187 LYITNVDHL 9 Unmodified _LYITNVDHL_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2947998046875 2 544.292756 1086.57096 1.8751 0.0010206 3.3251 0.0018098 5.2001 0.0028304 544.293934595216 62.594 0.61134 56.418 56.088 56.7 -6.1757 47 31 2 0 0 0 0.014417 1 40444 40444 69.105 22.184 1 47738000 38812 6691 25982 26475 45481 45481 0.031137256147076187 LYITNVDHL 9 Unmodified _LYITNVDHL_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.292756 1086.57096 -0.66139 -0.00035999 4.7446 0.0025825 4.0832 0.0022225 544.2933057596205 56.649 0.25824 56.164 56.071 56.329 -0.48554 -0.12714 0.0010354 NaN 69.105 47 14 4 NaN NaN NaN NaN 0 NaN NaN 0 20329000 38813 6691 25982 26475 0.031137256147076187 LYITRVEDI 9 Unmodified _LYITRVEDI_ 0 0 0 ENSG00000099282|ENST00000373290|TSPAN15 ENSG00000099282|ENST00000373290|TSPAN15 ENSG00000099282|ENST00000373290|TSPAN15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3150024414062 2 561.313689 1120.61282 NaN NaN NaN NaN NaN NaN NaN 55.435 1 55.435 54.935 55.935 0 0 0 0 0.18351 1 30796 30796 32.786 3.7041 1 38814 1691 25983 26476 45482 45482 0.05734281303239186 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.334228515625 2 561.333893 1120.65323 0.96218 0.0005401 -0.36998 -0.00020768 0.59219 0.00033242 561.3337014814857 81.272 0.33386 80.78 80.641 80.975 -0.49247 56 20 4 0 0 0 0.08907 1 44521 44521 45.7 26.261 1 11966000 38815 1640 25984 26477 45483 45483 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3345947265625 2 561.333893 1120.65323 0.50912 0.00028578 -0.82106 -0.00046089 -0.31195 -0.00017511 561.3335350871873 80.305 0.35075 80.363 80.235 80.586 0.057587 52 17 4 0 0 0 0.013118 2 44336 44336;44449 88.954 42.033 1 129570000 38816 1640 25984 26477 45484;45485 45484 0.09773247693647136 LYIVEPLKF 9 Unmodified _LYIVEPLKF_ 0 0 0 nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3347778320312 2 561.333893 1120.65323 1.4035 0.00078785 0.15425 8.6588E-05 1.5578 0.00087444 561.3338479627549 96.286 0.48738 90.111 89.801 90.289 -6.1757 108 29 5 0 0 0 0.040733 2 63817 63693;63817 62.573 26.446 1 529700000 38817 1640 25984 26477 45486;45487 45487 0.09773247693647136 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(78)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7944946289062 2 568.794078 1135.5736 0.47581 0.00027064 -0.44482 -0.00025301 0.030991 1.7627E-05 568.7942912504291 59.366 0.50639 58.875 58.665 59.171 -0.49079 70 23 5 0 0 0 0.010877 1 32283 32283 77.984 56.238 1 15721000 38818 8498 25985 26478 45488 45488 1443 0.011238577480071399 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(78)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7937622070312 2 568.794078 1135.5736 0.4433 0.00025215 0.64327 0.00036589 1.0866 0.00061803 568.7947363060546 59.791 0.3604 59.3 59.069 59.429 -0.49079 41 17 3 0 0 0 0.010877 2 32531 32478;32531 77.984 48.903 1 17792000 38819 8498 25985 26478 45489;45490 45490 1443 0.011238577480071399 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(89)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7940063476562 2 568.794078 1135.5736 0.55254 0.00031428 -0.38266 -0.00021765 0.16989 9.6631E-05 568.7940088818394 58.994 0.36391 58.934 58.741 59.105 -0.060722 73 17 5 0 0 0 0.0086179 2 32082 32082;32180 89.427 67.68 1 91145000 38820 8498 25985 26478 45491;45492 45491 1443 0.011238577480071399 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(89)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7942504882812 2 568.794078 1135.5736 0.40635 0.00023113 1.6916 0.00096217 2.0979 0.0011933 568.7957040620224 59.407 0.64101 59.354 59.093 59.734 -0.053062 88 32 5 0 0 0 0.0086179 1 32357 32357 89.427 60.345 1 107050000 38821 8498 25985 26478 45493 45493 1443 0.011238577480071399 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(85)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7944946289062 2 568.794078 1135.5736 1.2079 0.00068707 -1.3541 -0.00077019 -0.14614 -8.3122E-05 568.7939228054321 64.786 0.53185 58.611 58.315 58.847 -6.1757 93 29 5 0 0 0 0.0090851 2 42051 41912;42051 85.357 63.61 1 82878000 38822 8498 25985 26478 45494;45495 45495 1443 0.011238577480071399 LYIVHPTMF 9 Oxidation (M) _LYIVHPTM(Oxidation (M))F_ LYIVHPTM(1)F LYIVHPTM(89)F 0 0 1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7949829101562 2 568.794078 1135.5736 0.69351 0.00039446 -0.055611 -3.1631E-05 0.63789 0.00036283 568.7944608097736 65.143 0.62758 58.967 58.77 59.398 -6.1757 115 34 5 0 0 0 0.0086179 3 42393 42251;42393;42536 89.427 51.276 1 83054000 38823 8498 25985 26478 45496;45497;45498 45497 1443 0.011238577480071399 LYIVHPTMF 9 Unmodified _LYIVHPTMF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7970581054688 2 560.79662 1119.57869 1.3213 0.00074096 0.057994 3.2523E-05 1.3793 0.00077348 560.7965918054833 86.377 1.5477 80.201 79.183 80.731 -6.1757 239 86 5 0 0 0 0.0058506 6 56633 56503;56633;56762;56883;57006;57133 114.94 91.795 1 113880000 38824 8498 25985 26479 45499;45500;45501;45502;45503;45504 45500 0.02368161610615971 LYIWADVI 8 Unmodified _LYIWADVI_ 0 0 0 ENSG00000173200|ENST00000464300|PARP15;ENST00000465304.5_1_3:122313690-122334156:+|nuORF ENSG00000173200|ENST00000464300|PARP15 ENSG00000173200|ENST00000464300|PARP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7743530273438 2 496.776211 991.537869 1.4735 0.00073201 -2.9549 -0.0014679 -1.4814 -0.0007359 496.77446435889794 82.356 0.3904 82.418 82.22 82.61 0.062004 23 14 2 0 0 0 0.5953 1 45583 45583 26.341 0 1 3607200 38825 8297 25986 26480 45505 45505 0.04176143562665402 LYIWLEVF 8 Unmodified _LYIWLEVF_ 0 0 0 REV__ENSG00000164626|ENST00000359534|KCNK5 REV__ENSG00000164626|ENST00000359534|KCNK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7982788085938 2 541.799686 1081.58482 NaN NaN NaN NaN NaN NaN NaN 67.579 1 67.097 66.597 67.597 -0.48218 0 0 0 0.85111 1 36923 36923 20.871 1.4322 1 + 38826 21933 25987 26481 45506 45506 0.04729003113811814 LYIYIYIF 8 Unmodified _LYIYIYIF_ 0 0 0 ENST00000591924.5_1_18:33234574-33234712:+|nuORF ENST00000591924.5_1_18:33234574-33234712:+|nuORF ENST00000591924.5_1_18:33234574-33234712:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7508544921875 2 554.309887 1106.60522 0.86562 0.00047982 -4.2274 -0.0023433 -3.3617 -0.0018634 554.3077239238739 38.7 0.19556 38.7 38.639 38.834 0 11 8 2 0 0 0 8.7369 1 20767 20767 11.114 0 1 1139800 38827 15713 25988 26482 45507 45507 0.05618173773586932 LYIYPQSLNF 10 Unmodified _LYIYPQSLNF_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.3297119140625 2 629.329339 1256.64412 NaN NaN NaN NaN NaN NaN NaN 86.908 1 86.966 86.466 87.466 0.05822 0 0 0 0.12115 1 48294 48294 58.679 22.552 1 38828 3233 25989 26483 45508 45508 0.026068543373185094 LYKAAIEELPI 11 Unmodified _LYKAAIEELPI_ 0 0 0 REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 420.8469543457031 3 420.579706 1258.71729 0.98649 0.0004149 -2.17 -0.00091264 -1.1835 -0.00049775 420.57889208886354 40.547 0.27364 36.017 35.889 36.163 -4.5294 25 16 2 0 0 0 0.30269 1 24323 24323 3.8459 0 1 6487800 + 38829 20302 25990 26484 45509 45509 0.09827983059949474 LYKALVVG 8 Unmodified _LYKALVVG_ 0 0 0 REV__UGT1A4|p.A159V|1|0.24|ENSG00000244474|chr2:233719296-233719296|C/T|missense_variant REV__UGT1A4|p.A159V|1|0.24|ENSG00000244474|chr2:233719296-233719296|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 431.7738952636719 2 431.773471 861.53239 NaN NaN NaN NaN NaN NaN NaN 92.88 1 86.705 86.205 87.205 -6.1757 0 0 0 0.97348 1 61438 61438 5.7604 2.8712 1 + 38830 30132 25991 26485 45510 45510 0.09608464770860792 LYKDLKNFL 9 Unmodified _LYKDLKNFL_ 0 0 0 ENST00000605039.5_1_12:51696457-51717886:-|nuORF;nc|ENSG00000110934|Q9UBW5-2|BIN2;nc|ENSG00000110934|Q9UBW5-3|BIN2;ENSG00000110934|ENST00000615107|BIN2 ENST00000605039.5_1_12:51696457-51717886:-|nuORF ENST00000605039.5_1_12:51696457-51717886:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.2267150878906 3 385.225375 1152.6543 NaN NaN NaN NaN NaN NaN NaN 65.065 1 58.89 58.39 59.39 -6.1757 0 0 0 0.6306 1 42209 42209 7.609 0 1 38831 2754 25992 26486 45511 45511 0.08407462062541526 LYKDSCNRKS 10 Unmodified _LYKDSCNRKS_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3028564453125 2 607.303329 1212.59211 -0.26932 -0.00016356 -1.1742 -0.0007131 -1.4435 -0.00087665 607.3025948681462 41.607 0.14432 41.3 41.188 41.333 -0.30682 9 5 2 0 0 0 0.095098 1 22050 22050 47.749 0 1 16762000 38832 7600 25993 26487 45512 45512 -0.005686323480858846 LYKDVRDLL 9 Unmodified _LYKDVRDLL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8888549804688 3 378.888763 1133.64446 0.45452 0.00017221 0.20352 7.7112E-05 0.65804 0.00024932 378.8887735446413 53.515 0.36397 53.063 52.859 53.223 -0.45173 61 17 5 0 0 0 0.044042 2 28921 28921;29022 47.732 14.946 1 19827000 38833 7008;13737 25994 26488 45513;45514 45513 0.08298274057187882 LYKDVRDLL 9 Unmodified _LYKDVRDLL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.82958984375 2 567.829506 1133.64446 0.61674 0.0003502 0.29227 0.00016596 0.90901 0.00051616 567.8295106956953 53.54 0.24217 53.088 52.943 53.185 -0.45173 27 11 3 0 0 0 0.052231 1 28946 28946 55.503 21.101 1 3764400 38834 7008;13737 25994 26488 45515 45515 0.08298274057187882 LYKDVRDLL 9 Unmodified _LYKDVRDLL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8888549804688 3 378.888763 1133.64446 0.16994 6.439E-05 2.8353 0.0010743 3.0053 0.0011387 378.8890648728486 53.166 0.43733 53.103 52.782 53.219 -0.063423 46 21 4 0 0 0 0.14859 1 28801 28801 28.234 12.985 1 11661000 38835 7008;13737 25994 26488 45516 45516 0.08298274057187882 LYKDVRDLL 9 Unmodified _LYKDVRDLL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8297729492188 2 567.829506 1133.64446 0.34116 0.00019372 0.24139 0.00013707 0.58256 0.00033079 567.8296235974414 53.154 0.19638 53.091 52.981 53.177 -0.063423 15 9 2 0 0 0 0.024507 1 28814 28814 47.594 18.513 1 2833900 38836 7008;13737 25994 26488 45517 45517 0.08298274057187882 LYKDVRDLL 9 Unmodified _LYKDVRDLL_ 0 0 0 ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENSG00000163516|ENST00000323348|ANKZF1;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF ENST00000461731.5_1_2:220094544-220099084:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8890380859375 3 378.888763 1133.64446 1.7278 0.00065463 -1.047 -0.00039669 0.68077 0.00025794 378.8882819329821 59.191 0.54065 53.116 52.719 53.26 -6.0745 44 29 2 0 0 0 0.091305 1 37927 37927 35.08 13.49 1 28419000 38837 7008;13737 25994 26488 45518 45518 0.08298274057187882 LYKEKLEVYF 10 Unmodified _LYKEKLEVYF_ 0 0 0 nc|ENSG00000102886|Q7L5L3-1|GDPD3;ENSG00000102886|ENST00000406256|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2419128417969 3 444.579706 1330.71729 0.52608 0.00023388 0.60568 0.00026927 1.1318 0.00050316 444.5800288372968 55.129 0.23824 55.06 54.96 55.198 -0.068737 17 11 2 0 0 0 0.7191 1 29934 29934 0.77653 0.078866 1 2466400 38838 2074 25995 26489 45519 45519 0.06515983059944119 LYKEKLEVYF 10 Unmodified _LYKEKLEVYF_ 0 0 0 nc|ENSG00000102886|Q7L5L3-1|GDPD3;ENSG00000102886|ENST00000406256|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 nc|ENSG00000102886|Q7L5L3-1|GDPD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 444.579706 1330.71729 0.42211 0.00018766 -0.20419 -9.078E-05 0.21792 9.6883E-05 444.5796645483942 55.477 0.16721 54.999 54.945 55.112 -0.47798 -0.030255 -0.00061534 NaN 0.77653 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1043700 38839 2074 25995 26489 0.06515983059944119 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2965087890625 2 581.294965 1160.57538 0.4762 0.00027681 0.053232 3.0943E-05 0.52944 0.00030776 581.2951045381441 60.851 0.23228 60.851 60.743 60.975 0 17 9 2 0 0 0 0.20389 1 33916 33916 29.841 10.584 1 2081900 38840 4334 25996 26490 45520 45520 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.295166015625 2 581.294965 1160.57538 -0.13686 -7.9553E-05 -0.21293 -0.00012378 -0.34979 -0.00020333 581.2954447445612 61.436 0.40331 60.947 60.777 61.18 -0.48932 65 18 4 0 0 0 0.080011 2 33409 33409;33504 47.594 23.384 1 24101000 38841 4334 25996 26490 45521;45522 45521 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.294677734375 2 581.294965 1160.57538 0.77596 0.00045106 -0.8985 -0.00052229 -0.12253 -7.1228E-05 581.2942922477692 61.046 0.31619 61.002 60.845 61.162 -0.04351 32 15 3 0 0 0 0.052231 1 33284 33284 55.503 31.293 1 6925900 38842 4334 25996 26490 45523 45523 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS AL20221201_MKP_PDAC_01 4 581.295166015625 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 70.842 1 64.666 64.166 65.166 -6.1757 0 0 0 0.046779 1 46304 46304 72.968 25.219 1 38843 4334 25996 26490 45524 45524 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS AL20221201_MKP_PDAC_01 4 581.2948608398438 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 71.024 1 64.848 64.348 65.348 -6.1757 0 0 0 0.17147 1 46423 46423 43.772 25.637 1 38844 4334 25996 26490 45525 45525 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS AL20221201_MKP_PDAC_01 4 581.2945556640625 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 71.248 1 65.072 64.572 65.572 -6.1757 0 0 0 0.068588 1 46563 46563 63.961 17.94 1 38845 4334 25996 26490 45526 45526 0.001511900376272024 LYKELGEYF 9 Unmodified _LYKELGEYF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MSMS AL20221201_MKP_PDAC_01 4 581.2962036132812 2 581.294965 1160.57538 NaN NaN NaN NaN NaN NaN NaN 71.44 1 65.264 64.764 65.764 -6.1757 0 0 0 0.068588 1 46693 46693 63.961 25.987 1 38846 4334 25996 26490 45527 45527 0.001511900376272024 LYKENMGKG 9 Unmodified _LYKENMGKG_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2650756835938 2 520.265684 1038.51682 0.41248 0.0002146 -0.97364 -0.00050655 -0.56116 -0.00029195 520.2651858992904 85.3 0.52164 84.798 84.434 84.955 -0.5015 63 36 2 0 0 0 0.1773 2 46551 46551;46760 25.399 0 1 4874800 38847 9115 25997 26491 45528;45529 45528 -0.0009018980849759828 LYKEQLAKL 9 Unmodified _LYKEQLAKL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.2254028320312 3 369.225375 1104.6543 -0.45362 -0.00016749 0.24353 8.9917E-05 -0.2101 -7.7573E-05 369.2254405915876 36.526 0.21022 36.276 36.172 36.383 -0.2497 17 9 3 0 0 0 0.49766 1 19190 19190 7.609 2.7119 1 2606200 38848 1800 25998 26492 45530 45530 0.10615462062582992 LYKEQLAKL 9 Unmodified _LYKEQLAKL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 369.225375 1104.6543 -0.22918 -8.4619E-05 0.45766 0.00016898 0.22848 8.436E-05 369.22543173487463 36.183 0.17561 36.208 36.096 36.272 0.024967 0.017946 0.00054027 NaN 7.609 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1236100 38849 1800 25998 26492 0.10615462062582992 LYKESLTKL 9 Unmodified _LYKESLTKL_ 0 0 0 nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10 nc|ENSG00000133026|P35580|MYH10 nc|ENSG00000133026|P35580|MYH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.8262329101562 2 547.826432 1093.63831 0.5019 0.00027496 -0.82281 -0.00045076 -0.3209 -0.0001758 547.8259534707853 40.5 0.20932 40.199 40.09 40.299 -0.30128 15 9 2 0 0 0 0.095405 1 21432 21432 34.102 1.797 1 1439800 38850 4478 25999 26493 45531 45531 0.0952375582564855 LYKFSADEF 9 Unmodified _LYKFSADEF_ 0 0 0 ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000473294.6_1_1:33098913-33099651:-|nuORF ENST00000473294.6_1_1:33098913-33099651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2718505859375 2 560.27149 1118.52843 NaN NaN NaN NaN NaN NaN NaN 56.287 1 55.802 55.302 56.302 -0.48554 0 0 0 0.24069 1 30559 30559 36.506 15.635 1 38851 8580 26000 26494 45532 45532 -0.02609669513526569 LYKFSADEF 9 Unmodified _LYKFSADEF_ 0 0 0 ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS ENST00000473294.6_1_1:33098913-33099651:-|nuORF ENST00000473294.6_1_1:33098913-33099651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.27197265625 2 560.27149 1118.52843 NaN NaN NaN NaN NaN NaN NaN 56.048 1 55.98 55.48 56.48 -0.068737 0 0 0 0.61417 1 30474 30474 17.113 10.39 1 38852 8580 26000 26494 45533 45533 -0.02609669513526569 LYKHIGGKLQ 10 Unmodified _LYKHIGGKLQ_ 0 0 0 REV__ENSG00000136925|ENST00000341170|TSTD2 REV__ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2324829101562 3 386.232752 1155.67643 0.039004 1.5065E-05 -0.10137 -3.9153E-05 -0.062367 -2.4088E-05 386.5669349154068 19.54 0.10654 19.547 19.481 19.588 0.0078487 14 7 2 0 0 0 0.67046 1 9931 9931 6.1918 1.2948 1 2081600 + 38853 20198 26001 26495 45534 45534 0.10481686530988554 LYKKSGSQSL 10 Unmodified _LYKKSGSQSL_ 0 0 0 ENST00000446985.5_1_1:162601175-162625160:+|nuORF ENST00000446985.5_1_1:162601175-162625160:+|nuORF ENST00000446985.5_1_1:162601175-162625160:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3114013671875 2 555.811313 1109.60807 0.63558 0.00035326 0.95012 0.00052809 1.5857 0.00088135 556.3128646000577 77.164 3.2088 70.988 68.832 72.041 -6.1757 377 178 3 0 0 0 0.11824 2 50214 50214;50343 43.772 43.772 1 44007000 38854 13475 26002 26496 45535;45536 45535 0.057653971604850085 LYKKTQETL 9 Unmodified _LYKKTQETL_ 0 0 0 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.321533203125 2 562.321514 1122.62847 -0.23893 -0.00013435 0.19665 0.00011058 -0.04228 -2.3775E-05 562.3215981563083 18.906 0.17693 18.906 18.806 18.983 0 35 14 3 0 0 0 0.040337 1 9413 9413 45.74 26.301 1 4124500 38855 1919 26003 26497 45537 45537 0.07206567820298915 LYKKTQETL 9 Unmodified _LYKKTQETL_ 0 0 0 ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 ENSG00000101150|ENST00000346249|TPD52L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3222045898438 2 562.321514 1122.62847 1.3528 0.00076073 -0.095722 -5.3826E-05 1.2571 0.0007069 562.3214386033069 20.676 0.37259 17.983 17.762 18.134 -2.693 70 23 4 0 0 0 0.0083595 2 11043 10944;11043 96.367 96.367 1 22197000 38856 1919 26003 26497 45538;45539 45539 0.07206567820298915 LYKKWMDF 8 Unmodified _LYKKWMDF_ 0 0 0 REV__ENST00000261070.6_1_3:119388418-119388478:-|nuORF REV__ENST00000261070.6_1_3:119388418-119388478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2924194335938 2 565.788795 1129.56304 0.30512 0.00017263 1.9957 0.0011291 2.3008 0.0013018 566.2912736378428 81.313 0.31421 81.313 81.102 81.416 0 21 14 3 0 0 0 0.80624 1 45096 45096 2.8892 0.82947 1 494940 + 38857 24973 26004 26498 45540 45540 0.0034387509358566604 LYKLIQPA 8 Unmodified _LYKLIQPA_ 0 0 0 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 ENSG00000138483|ENST00000261058|CCDC54 MSMS AL20221201_MKP_PDAC_01 4 473.2925109863281 2 473.292028 944.569503 NaN NaN NaN NaN NaN NaN NaN 83.827 1 77.652 77.152 78.152 -6.1757 0 0 0 0.40668 1 55132 55132 53.576 2.7205 1 38858 5061 26005 26499 45541 45541 0.09500136316603403 LYKLKLGEI 9 Unmodified _LYKLKLGEI_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;nc|ENSG00000134287|P61204-2|ARF3 ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.5624084472656 3 359.561987 1075.66413 0.72667 0.00026128 0.050955 1.8322E-05 0.77762 0.0002796 359.5619732186433 50.702 0.26485 50.288 50.15 50.415 -0.41351 29 12 3 0 0 0 0.14602 1 27290 27290 20.415 1.0526 1 6697600 38859 7752;4585 26006 26500 45542 45542 0.12932650067932627 LYKLKLGEI 9 Unmodified _LYKLKLGEI_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;nc|ENSG00000134287|P61204-2|ARF3 ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.5622253417969 3 359.561987 1075.66413 1.1962 0.00043011 0.35657 0.00012821 1.5528 0.00055832 359.56201524957953 50.332 0.2863 50.283 50.127 50.413 -0.048824 40 13 4 0 0 0 0.2001 1 27197 27197 21.537 4.4241 1 7345200 38860 7752;4585 26006 26500 45543 45543 0.12932650067932627 LYKLKLGEI 9 Unmodified _LYKLKLGEI_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;nc|ENSG00000134287|P61204-2|ARF3 ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5627136230469 3 359.561987 1075.66413 1.6603 0.00059696 0.30796 0.00011073 1.9682 0.0007077 359.56210349902057 83.74 0.78391 77.564 77.146 77.93 -6.1757 63 40 2 0 0 0 0.41742 1 55089 55089 11.495 4.8643 1 11621000 38861 7752;4585 26006 26500 45544 45544 0.12932650067932627 LYKLLGCI 8 Unmodified _LYKLLGCI_ 0 0 0 ENST00000452606.2_1_3:12880633-12880819:-|nuORF ENST00000452606.2_1_3:12880633-12880819:-|nuORF ENST00000452606.2_1_3:12880633-12880819:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 461.7765197753906 2 461.775157 921.53576 NaN NaN NaN NaN NaN NaN NaN 46.546 1 41.466 40.966 41.966 -5.0805 0 0 0 0.94749 1 28782 28782 11.114 0 1 38862 13545 26007 26501 45545 45545 0.0718539155320741 LYKLYQHYY 9 Unmodified _LYKLYQHYY_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8875122070312 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 102.43 1 102.43 101.93 102.93 0 0 0 0 0.85798 1 56486 56486 0.23584 0.028987 1 38863 9064 26008 26502 45546 45546 0.011222740571838585 LYKMFIYW 8 Oxidation (M) _LYKM(Oxidation (M))FIYW_ LYKM(1)FIYW LYKM(50)FIYW 0 0 1 REV__ENST00000496524.5_1_2:110889257-110901337:-|nuORF REV__ENST00000496524.5_1_2:110889257-110901337:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3018798828125 2 590.298996 1178.58344 0.8349 0.00049284 1.8725 0.0011053 2.7074 0.0015982 590.3004435177912 81.206 1.7159 75.03 74.35 76.066 -6.1757 146 96 2 0 0 0 0.35156 1 53039 53039 49.669 7.8293 1 26797000 + 38864 27965 26009 26503 45547 45547 1862 0.0012904575337415736 LYKMLSENF 9 Unmodified _LYKMLSENF_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7890625 2 572.788992 1143.56343 1.3503 0.00077346 -0.33421 -0.00019143 1.0161 0.00058203 572.7887186973792 62.36 0.49826 56.185 55.984 56.482 -6.1757 43 26 2 0 0 0 0.0094097 2 40214 40214;40346 82.529 40.618 1 22861000 38865 9456 26010 26504 45548;45549 45548 -0.0026074997722389526 LYKMLSENF 9 Oxidation (M) _LYKM(Oxidation (M))LSENF_ LYKM(1)LSENF LYKM(64)LSENF 0 0 1 ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MSMS AL20221201_MKP_PDAC_01 4 580.787841796875 2 580.78645 1159.55835 NaN NaN NaN NaN NaN NaN NaN 49.377 1 43.981 43.481 44.481 -5.3961 0 0 0 0.035688 1 30845 30845 63.961 29.559 1 38866 9456 26010 26505 45550 45550 1556 -0.015050538398327262 LYKNFLRF 8 Unmodified _LYKNFLRF_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5469360351562 3 367.54656 1099.61785 NaN NaN NaN NaN NaN NaN NaN 29.688 1 29.607 29.107 30.107 -0.080429 0 0 0 0.7268 1 15378 15378 26.884 11.036 1 38867 2185 26011 26506 45551 45551 0.07202629956509554 LYKNIVQD 8 Unmodified _LYKNIVQD_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000497783.3_1_12:124362318-124366453:+|nuORF nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7738342285156 2 496.7742 991.533846 -0.32943 -0.00016365 0.2104 0.00010452 -0.11903 -5.9133E-05 496.7742462143687 18.908 0.13949 18.908 18.825 18.965 0 27 12 3 0 0 0 0.57045 1 9416 9416 28.487 0 1 1775800 38868 9988 26012 26507 45552 45552 0.03774054068958321 LYKNTPEK 8 Unmodified _LYKNTPEK_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1 ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.257080078125 2 496.7742 991.533846 1.2256 0.00060887 0.42896 0.0002131 1.6546 0.00082196 496.7744315929203 20.669 0.32237 17.976 17.801 18.124 -2.693 49 20 3 0 0 0 8.7369 1 11089 11089 32.305 3.8186 1 7259500 38869 7898 26013 26508 45553 45553 0.037740540689469526 LYKPHAKVT 9 Unmodified _LYKPHAKVT_ 0 0 0 REV__nc|ENSG00000118816|Q14094-2|CCNI REV__nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5469970703125 3 352.878198 1055.61277 1.5366 0.00054223 -2.0786 -0.00073349 -0.54202 -0.00019127 352.877545321372 42.932 0.44889 38.247 37.982 38.431 -4.6846 50 28 3 0 0 0 0.45045 1 25885 25885 10.151 4.4187 1 11987000 + 38870 19170 26014 26509 45554 45554 0.08718326093890028 LYKPLKRKFRF 11 Unmodified _LYKPLKRKFRF_ 0 0 0 REV__ENSG00000002726|ENST00000360937|AOC1;REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF REV__ENSG00000002726|ENST00000360937|AOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 748.4634399414062 2 748.466638 1494.91872 NaN NaN NaN NaN NaN NaN NaN 82.34 1 82.402 81.902 82.902 0.062004 0 0 0 0.94144 1 45551 45551 1.4819 0 1 + 38871 16935;27677 26015 26510 45555 45555 0.19106136606933433 LYKQSGSPL 9 Unmodified _LYKQSGSPL_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7742919921875 2 496.7742 991.533846 1.2256 0.00060887 0.42896 0.0002131 1.6546 0.00082196 496.7744315929203 20.669 0.32237 17.976 17.801 18.124 -2.693 49 20 3 0 0 0 0.03568 1 10973 10973 52.268 3.9225 1 7259500 + 38872 24424 26016 26511 45556 45556 0.0377405406896969 LYKQVLLDP 9 Unmodified _LYKQVLLDP_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.821533203125 2 544.82115 1087.62775 0.36398 0.0001983 -0.50119 -0.00027306 -0.13721 -7.4756E-05 544.8209021245449 72.196 0.60544 71.72 71.415 72.02 -0.47609 63 26 4 0 0 0 0.047196 1 39606 39606 46.021 8.047 1 4684300 + 38873 18428 26017 26512 45557 45557 0.08743773171249813 LYKQVLLDP 9 Unmodified _LYKQVLLDP_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.2931518554688 2 544.82115 1087.62775 NaN NaN NaN NaN NaN NaN NaN 92.315 1 86.139 85.639 86.639 -6.1757 0 0 0 0.04157 1 61046 61046 61.357 23.383 1 + 38874 18428 26017 26512 45558 45558 0.08743773171249813 LYKQVLLDP 9 Unmodified _LYKQVLLDP_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8193969726562 2 544.82115 1087.62775 NaN NaN NaN NaN NaN NaN NaN 92.444 1 86.268 85.768 86.768 -6.1757 0 0 0 0.014922 1 61135 61135 85.357 17.276 1 + 38875 18428 26017 26512 45559 45559 0.08743773171249813 LYKQVLLDP 9 Unmodified _LYKQVLLDP_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8201293945312 2 544.82115 1087.62775 NaN NaN NaN NaN NaN NaN NaN 92.631 1 86.456 85.956 86.956 -6.1757 0 0 0 0.019979 1 61264 61264 112.59 40.671 1 + 38876 18428 26017 26512 45560 45560 0.08743773171249813 LYKRMAWL 8 Unmodified _LYKRMAWL_ 0 0 0 REV__ENST00000396791.7_1_4:175225428-175225509:+|nuORF REV__ENST00000396791.7_1_4:175225428-175225509:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8050537109375 2 540.80478 1079.59501 0.022034 1.1916E-05 -0.36282 -0.00019622 -0.34079 -0.0001843 541.305879039453 14.473 0.047132 11.971 11.933 11.98 -2.5029 8 6 2 0 0 0 0.80447 1 7355 7355 2.5775 0 1 1300100 + 38877 26515 26018 26513 45561 45561 0.05839287567391693 LYKRPFNEAF 10 Unmodified _LYKRPFNEAF_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.896728515625 3 428.896029 1283.66626 0.58167 0.00024947 -0.83556 -0.00035837 -0.2539 -0.0001089 428.895486140419 45.148 0.39647 40.296 40.069 40.466 -4.852 37 26 2 0 0 0 0.13391 1 27686 27686 29.437 12.871 1 20729000 38878 1848 26019 26514 45562 45562 0.03577078805733436 LYKRYLHVD 9 Unmodified _LYKRYLHVD_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.8345947265625 2 603.835123 1205.65569 0.95393 0.00057602 -1.3012 -0.0007857 -0.34725 -0.00020968 603.834352526861 79.955 0.8798 79.465 79.03 79.91 -0.48932 97 36 3 0 0 0 0.12841 4 43719 43620;43719;43828;43926 30.225 21.632 1 7138000 + 38879 22427;20888 26020 26515 45563;45564;45565;45566 45564 0.061090961512945796 LYKRYLHVD 9 Unmodified _LYKRYLHVD_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.83544921875 2 603.835123 1205.65569 0.20567 0.00012419 -1.1054 -0.00066746 -0.8997 -0.00054327 603.8345103109963 79.37 0.53484 79.425 79.015 79.55 0.054977 43 20 3 0 0 0 0.12841 1 43835 43835 30.225 10.968 1 5066200 + 38880 22427;20888 26020 26515 45567 45567 0.061090961512945796 LYKRYLHVD 9 Unmodified _LYKRYLHVD_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.83544921875 2 603.835123 1205.65569 0.54712 0.00033037 -0.81303 -0.00049094 -0.26591 -0.00016056 603.8346487885289 87.154 0.85976 80.978 80.546 81.405 -6.1757 116 46 3 0 0 0 0.095405 3 57601 57239;57472;57601 34.102 13.283 1 55148000 + 38881 22427;20888 26020 26515 45568;45569;45570 45570 0.061090961512945796 LYKRYLHVD 9 Unmodified _LYKRYLHVD_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 603.835123 1205.65569 0.95393 0.00057602 -1.3012 -0.0007857 -0.34725 -0.00020968 603.834352526861 79.955 0.8798 79.465 79.03 79.91 -0.48932 0.020271 -9.0633E-05 NaN 30.225 97 36 3 NaN NaN NaN NaN 0 NaN NaN 0 7138000 + 38882 22427;20888 26020 26515 0.061090961512945796 LYKRYLHVD 9 Unmodified _LYKRYLHVD_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1;REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 603.835123 1205.65569 0.20567 0.00012419 -1.1054 -0.00066746 -0.8997 -0.00054327 603.8345103109963 79.37 0.53484 79.425 79.015 79.55 0.054977 -0.020271 0.00014584 NaN 30.225 43 20 3 NaN NaN NaN NaN 0 NaN NaN 0 5066200 + 38883 22427;20888 26020 26515 0.061090961512945796 LYKRYPSLW 9 Unmodified _LYKRYPSLW_ 0 0 0 nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1 nc|ENSG00000099956|Q12824-2|SMARCB1 nc|ENSG00000099956|Q12824-2|SMARCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2288513183594 3 409.229119 1224.66553 0.053145 2.1748E-05 0.875 0.00035807 0.92814 0.00037982 409.2295383078426 48.726 0.31633 48.683 48.455 48.772 -0.04369 39 15 4 0 0 0 0.2143 1 26300 26300 20.415 0 1 3450600 38884 1727 26021 26516 45571 45571 0.062182841566936986 LYKRYPSLW 9 Unmodified _LYKRYPSLW_ 0 0 0 nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1 nc|ENSG00000099956|Q12824-2|SMARCB1 nc|ENSG00000099956|Q12824-2|SMARCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2302856445312 3 409.229119 1224.66553 0.80332 0.00032874 0.38701 0.00015838 1.1903 0.00048712 409.22928834399494 53.328 0.10555 47.524 47.498 47.603 -5.8042 10 6 2 0 0 0 0.23158 1 33711 33711 31.268 7.4786 1 14477000 38885 1727 26021 26516 45572 45572 0.062182841566936986 LYKSAFFYF 9 Unmodified _LYKSAFFYF_ 0 0 0 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3041381835938 2 593.302593 1184.59063 1.2937 0.00076755 2.5813 0.0015315 3.875 0.002299 593.8055186659798 98.306 0.20544 92.131 92 92.206 -6.1757 28 13 3 0 0 0 0.08691 1 65181 65181 36.127 8.4982 1 32137000 38886 7274 26022 26517 45573 45573 0.005721016254710776 LYKSANKY 8 Unmodified _LYKSANKY_ 0 0 0 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2420349121094 2 493.768917 985.523281 -0.31788 -0.00015696 0.058007 2.8642E-05 -0.25988 -0.00012832 493.76878384027555 24.574 0.17014 24.574 24.49 24.66 0 12 10 2 0 0 0 8.7369 1 12564 12564 15.847 1.0089 1 623100 38887 9880 26023 26518 45574 45574 0.0299407141451411 LYKSLNPNL 9 Unmodified _LYKSLNPNL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3040161132812 2 531.303124 1060.5917 0.72525 0.00038533 1.0827 0.00057526 1.808 0.00096059 531.3038864984817 48.029 0.3421 42.795 42.616 42.958 -5.2339 30 20 2 0 0 0 0.0085526 1 29804 29804 129.77 77.504 1 13810000 38888 4010 26024 26519 45575 45575 0.06382315994369492 LYKSVPTRL 9 Unmodified _LYKSVPTRL_ 0 0 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENST00000473770.5_1_22:32017296-32019834:-|nuORF;ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5543518066406 3 359.553603 1075.63898 1.8434 0.00066281 -0.48469 -0.00017427 1.3587 0.00048853 359.8877092964729 37.772 0.27864 33.403 33.252 33.531 -4.3689 25 16 2 0 0 0 0.073961 1 22178 22178 39.213 20.84 1 4988000 38889 16571 26025 26520 45576 45576 0.1041859526535518 LYKSVPTRL 9 Unmodified _LYKSVPTRL_ 0 0 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENST00000473770.5_1_22:32017296-32019834:-|nuORF;ENSG00000241878|ENST00000439502|PISD;ENST00000460723.5_1_22:32017538-32058194:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 359.553603 1075.63898 -0.049235 -1.7703E-05 0.22035 7.9226E-05 0.17111 6.1524E-05 359.5535560005819 33.41 0.12339 33.439 33.338 33.461 0.028934 0.018138 0.00057413 NaN 39.213 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1110100 38890 16571 26025 26520 0.1041859526535518 LYKTIFEGF 9 Unmodified _LYKTIFEGF_ 0 0 0 ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2998657226562 2 559.30005 1116.58555 0.56821 0.0003178 -0.31907 -0.00017845 0.24915 0.00013935 559.299806050347 72.213 0.30611 72.252 72.111 72.417 0.039032 23 14 2 0 0 0 0.0090524 1 39737 39737 85.642 39.621 1 7735100 38891 3204 26026 26521 45577 45577 0.031917977628836525 LYKTKSNKE 9 Unmodified _LYKTKSNKE_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.31494140625 2 555.811313 1109.60807 0.63558 0.00035326 0.95012 0.00052809 1.5857 0.00088135 556.3128646000577 77.164 3.2088 70.988 68.832 72.041 -6.1757 377 178 3 0 0 0 0.070838 1 49091 49091 39.957 39.957 1 44007000 38892 10087 26027 26522 45578 45578 0.057653971604850085 LYKVLGVLF 9 Unmodified _LYKVLGVLF_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;ENST00000497209.5_1_20:61299742-61303242:+|nuORF nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.33251953125 2 526.331153 1050.64775 NaN NaN NaN NaN NaN NaN NaN 89.038 1 89.086 88.586 89.586 0.047852 0 0 0 0.17247 1 49534 49534 34.102 10.954 1 38893 1925 26028 26523 45579 45579 0.12445568901853221 LYKYSTDGI 9 Unmodified _LYKYSTDGI_ 0 0 0 REV__ENSG00000118620|ENST00000261560|ZNF430 REV__ENSG00000118620|ENST00000261560|ZNF430 MSMS AL20221201_MKP_PDAC_01 4 530.2736206054688 2 530.27149 1058.52843 NaN NaN NaN NaN NaN NaN NaN 95.517 1 89.341 88.841 89.841 -6.1757 0 0 0 0.34649 1 63266 63266 22.736 2.2827 1 + 38894 19161 26029 26524 45580 45580 0.0015033048646273528 LYLAEVSK 8 Unmodified _LYLAEVSK_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.769287109375 2 461.765843 921.517133 0.70885 0.00032732 1.4235 0.00065732 2.1323 0.00098464 461.76639080020135 39.311 0.31496 39.311 39.154 39.469 0 34 14 4 0 0 0 0.46677 1 21017 21017 37.974 1.9298 1 8092400 + 38895 29829 26030 26525 45581 45581 0.053235531830068794 LYLAEVSK 8 Unmodified _LYLAEVSK_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 461.765843 921.517133 -0.17239 -7.9603E-05 0.94695 0.00043727 0.77456 0.00035766 461.7660739902261 39.493 0.19358 39.195 39.091 39.285 -0.29716 -0.057547 -0.00013381 NaN 37.974 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1348400 + 38896 29829 26030 26525 0.053235531830068794 LYLAEVSKQN 10 Unmodified _LYLAEVSKQN_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.8170166015625 2 582.816596 1163.61864 0.38351 0.00022351 -0.87179 -0.0005081 -0.48829 -0.00028458 582.8164691163315 38.389 0.33159 38.389 38.288 38.62 0 58 25 3 0 0 0 0.074936 1 20461 20461 52.268 2.7141 1 15661000 + 38897 29829 26031 26526 45582 45582 0.043373798149104914 LYLAEVSKQN 10 Unmodified _LYLAEVSKQN_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.816596 1163.61864 0.38351 0.00022351 -0.87179 -0.0005081 -0.48829 -0.00028458 582.8164691163315 38.389 0.33159 38.389 38.288 38.62 0 -0.016543 -0.00030596 NaN 52.268 58 25 3 NaN NaN NaN NaN 0 NaN NaN 0 15661000 + 38898 29829 26031 26526 0.043373798149104914 LYLAFPLAF 9 Unmodified _LYLAFPLAF_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.8032836914062 2 527.802229 1053.5899 1.0059 0.00053092 0.34302 0.00018104 1.3489 0.00071196 527.8026036471092 102.3 0.096947 96.122 96.072 96.169 -6.1757 18 5 4 0 0 0 0.028712 1 68655 68655 56.048 19.582 1 53819000 38899 8198 26032 26527 45583 45583 0.06525306976436696 LYLAGTTQNI 10 Unmodified _LYLAGTTQNI_ 0 0 0 REV__ENSG00000166341|ENST00000299441|DCHS1 REV__ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7907104492188 2 547.298039 1092.58152 0.2524 0.00013814 -2.1076 -0.0011535 -1.8552 -0.0010154 547.2975363147251 39.932 0.578 39.932 39.553 40.131 0 71 28 4 0 0 0 0.27276 1 21285 21285 29.082 0.90835 1 13904000 + 38900 22106 26033 26528 45584 45584 0.038937082691290925 LYLAGTTQNI 10 Unmodified _LYLAGTTQNI_ 0 0 0 REV__ENSG00000166341|ENST00000299441|DCHS1 REV__ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2972412109375 2 547.298039 1092.58152 -0.10855 -5.9412E-05 -0.90903 -0.00049751 -1.0176 -0.00055692 547.2973907693597 38.619 0.78978 38.332 38.071 38.861 -0.28687 126 36 5 0 0 0 0.020813 1 20264 20264 74.929 7.5851 1 1408200000 + 38901 22106 26033 26528 45585 45585 0.038937082691290925 LYLCDESVGF 10 Unmodified _LYLCDESVGF_ 0 0 0 REV__nc|ENSG00000159398|Q6NT32-3|CES5A REV__nc|ENSG00000159398|Q6NT32-3|CES5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.263427734375 2 573.262807 1144.51106 0.63623 0.00036473 0.11734 6.727E-05 0.75358 0.000432 573.2627369260008 87.099 0.48578 86.595 86.369 86.855 -0.50423 39 19 4 0 0 0 0.6606 1 47623 47623 7.2892 2.0586 1 1134000 + 38902 21478 26034 26529 45586 45586 -0.05541333110841151 LYLCERLVRFW 11 Unmodified _LYLCERLVRFW_ 0 0 0 ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 749.4044189453125 2 749.405389 1496.79623 1.4335 0.0010743 -0.78952 -0.00059167 0.64401 0.00048263 749.4045240082297 82.416 0.26318 82.478 82.347 82.61 0.061996 22 9 3 0 0 0 0.63851 1 45614 45614 9.3831 3.6513 1 5798900 38903 7302 26035 26530 45587 45587 0.06769931813232688 LYLCERLVRFW 11 Unmodified _LYLCERLVRFW_ 0 0 0 ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB ENSG00000165168|ENST00000378588|CYBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 749.9075927734375 2 749.405389 1496.79623 1.193 0.00089406 -0.46238 -0.00034651 0.73065 0.00054755 749.4052468672267 96.884 0.37099 90.709 90.506 90.877 -6.1757 87 21 5 0 0 0 0.58219 2 64109 64109;64234 12.241 3.4953 1 262990000 38904 7302 26035 26530 45588;45589 45588 0.06769931813232688 LYLCGFQEPD 10 Unmodified _LYLCGFQEPD_ 0 0 0 nc|ENSG00000196236|Q9NQH7-3|XPNPEP3;nc|ENSG00000196236|Q9NQH7-5|XPNPEP3;nc|ENSG00000196236|Q9NQH7-2|XPNPEP3;nc|ENSG00000196236|Q9NQH7-4|XPNPEP3;ENSG00000196236|ENST00000357137|XPNPEP3 nc|ENSG00000196236|Q9NQH7-3|XPNPEP3 nc|ENSG00000196236|Q9NQH7-3|XPNPEP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7642822265625 2 592.768257 1183.52196 NaN NaN NaN NaN NaN NaN NaN 28.708 1 28.708 28.208 29.208 0 0 0 0 0.91523 1 14841 14841 7.2892 2.0586 1 38905 9786 26036 26531 45590 45590 -0.06245930736531591 LYLCLFGEF 9 Unmodified _LYLCLFGEF_ 0 0 0 REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|218|1|anti-sense REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|218|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.77685546875 2 552.775354 1103.53615 0.87614 0.00048431 2.3042 0.0012737 3.1803 0.001758 552.7774491842334 57.863 0.3155 57.797 57.655 57.97 -0.066036 20 15 2 0 0 0 0.3554 1 31482 31482 14.582 7.8585 1 1778800 + 38906 29434 26037 26532 45591 45591 -0.011472335175994886 LYLCTWFPF 9 Unmodified _LYLCTWFPF_ 0 0 0 ENST00000248104.11_1_16:1413820-1414120:-|nuORF ENST00000248104.11_1_16:1413820-1414120:-|nuORF ENST00000248104.11_1_16:1413820-1414120:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.293701171875 2 595.291171 1188.56779 0.066483 3.9577E-05 -0.14331 -8.5313E-05 -0.07683 -4.5736E-05 595.2914153993903 76.008 0.50085 76.008 75.77 76.271 0 39 20 3 0 0 0 0.46577 1 42253 42253 9.3474 1.1919 1 4235200 38907 11129 26038 26533 45592 45592 -0.018952407636561475 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7701416015625 2 530.769114 1059.52368 0.33967 0.00018029 -0.050327 -2.6712E-05 0.28934 0.00015357 530.7691588265163 48.119 0.92764 48.119 47.767 48.695 0 118 34 4 0 0 0 0.012148 2 26360 26360;26469 74.423 0 1 944940000 38908 1848 26039 26534 45593;45594 45593 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7955322265625 2 530.769114 1059.52368 -0.23765 -0.00012614 4.0702 0.0021603 3.8325 0.0020342 530.7715696802735 48.469 0.49596 48.469 48.394 48.89 0 28 23 2 0 0 0 0.05527 1 26755 26755 50.855 0 1 2858700 38909 1848 26039 26534 45595 45595 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.76953125 2 530.769114 1059.52368 0.35693 0.00018945 1.0367 0.00055024 1.3936 0.00073969 530.7697971655028 48.394 0.33274 48.022 47.849 48.181 -0.37172 66 16 6 0 0 0 0.016184 2 25934 25934;26035 67.344 0 1 51311000 38910 1848 26039 26534 45596;45597 45596 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7688598632812 2 530.769114 1059.52368 0.76394 0.00040548 0.11794 6.2599E-05 0.88188 0.00046808 530.7692288660858 54.547 0.61165 48.682 48.401 49.012 -5.8653 129 37 5 0 0 0 0.0082281 2 34482 34482;34625 92.822 0 1 1715299999.9999998 38911 1848 26039 26534 45598;45599 45598 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1060.53515625 1 1060.53095 1059.52368 0.55887 0.0005927 -0.45991 -0.00048775 0.098962 0.00010495 1060.5303384215313 54.561 0.27691 48.696 48.542 48.819 -5.8653 27 16 2 0 0 0 0.00022959 1 34689 34689 149.99 0 1 29661000 38912 1848 26039 26534 45600 45600 -0.0037055365628475556 LYLDEAHSI 9 Unmodified _LYLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.769114 1059.52368 0.43113 0.00022883 2.0462 0.0010861 2.4773 0.0013149 530.7702239921774 48.127 0.49685 48.088 47.849 48.346 -0.038643 -0.19067 -0.00014243 NaN 50.855 50 16 4 NaN NaN NaN NaN 0 NaN NaN 0 16062000 38913 1848 26039 26534 -0.0037055365628475556 LYLDIINLF 9 Unmodified _LYLDIINLF_ 0 0 0 ENSG00000155957|ENST00000358230|TMBIM4;ENST00000539652.1_1_12:66522892-66539669:-|nuORF ENSG00000155957|ENST00000358230|TMBIM4 ENSG00000155957|ENST00000358230|TMBIM4 MSMS AL20221201_MKP_PDAC_01 4 562.325439453125 2 562.323525 1122.6325 NaN NaN NaN NaN NaN NaN NaN 102.41 1 96.232 95.732 96.732 -6.1757 0 0 0 0.3031 1 68724 68724 34.102 3.4659 1 38914 6419 26040 26535 45601 45601 0.07608657313994627 LYLDKATLIW 10 Unmodified _LYLDKATLIW_ 0 0 0 nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2 nc|ENSG00000101888|Q9NPJ8-4|NXT2 nc|ENSG00000101888|Q9NPJ8-4|NXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.356201171875 2 618.355357 1234.69616 1.0294 0.00063652 0.64398 0.00039821 1.6734 0.0010347 618.3553572258968 97.871 0.18626 91.695 91.614 91.8 -6.1757 18 11 2 0 0 0 0.023726 1 64889 64889 91.085 49.245 1 14259000 38915 1997 26041 26536 45602 45602 0.0882001775109984 LYLDSPAV 8 Unmodified _LYLDSPAV_ 0 0 0 ENST00000323146.7_1_5:139946353-139946686:+|nuORF ENST00000323146.7_1_5:139946353-139946686:+|nuORF ENST00000323146.7_1_5:139946353-139946686:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.467041015625 1 877.466561 876.459284 0.98925 0.00086803 -0.34835 -0.00030566 0.6409 0.00056237 877.4659082230249 83.473 0.42041 77.297 77.146 77.567 -6.1757 35 21 2 0 0 0 0.18881 1 54830 54830 74.396 0 1 11766000 38916 11793 26042 26537 45603 45603 0.01611291257574976 LYLECSAKF 9 Carbamidomethyl (C) _LYLEC(Carbamidomethyl (C))SAKF_ LYLEC(1)SAKF LYLEC(44)SAKF 0 1 0 ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7811279296875 2 565.781167 1129.54778 0.54506 0.00030838 -0.063384 -3.5862E-05 0.48167 0.00027252 565.7810072445617 50.979 0.22334 50.925 50.803 51.026 -0.053871 21 10 3 0 0 0 0.05483 1 27587 27587 43.772 21.036 1 2728800 38917 5185 26043 26538 45604 45604 531 -0.011810364942903107 LYLECSAKF 9 Carbamidomethyl (C) _LYLEC(Carbamidomethyl (C))SAKF_ LYLEC(1)SAKF LYLEC(79)SAKF 0 1 0 ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF ENSG00000139725|ENST00000267205|RHOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7830810546875 2 565.781167 1129.54778 0.89734 0.0005077 -0.25571 -0.00014468 0.64163 0.00036302 565.7811577445725 56.997 0.60887 51.02 50.736 51.345 -5.9769 89 35 3 0 0 0 0.010611 3 36280 36280;36407;36552 78.728 26.46 1 600890000 38918 5185 26043 26538 45605;45606;45607 45605 531 -0.011810364942903107 LYLEDFFVM 9 Unmodified _LYLEDFFVM_ 0 0 0 ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7854614257812 2 588.785918 1175.55728 0.56388 0.00033201 0.55111 0.00032449 1.115 0.00065649 588.7852373938716 101.85 0.087769 95.674 95.63 95.717 -6.1757 10 4 3 0 0 0 0.052168 1 68382 68382 44.407 19.733 1 7705800 38919 4178 26044 26539 45608 45608 -0.023472682087685826 LYLEDYLEMIE 11 Unmodified _LYLEDYLEMIE_ 0 0 0 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-2|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.5637512207031 3 477.563505 1429.66868 0.41954 0.00020036 -1.186 -0.00056641 -0.7665 -0.00036605 477.56288401828806 59.055 0.28813 58.995 58.839 59.127 -0.060719 49 13 5 0 0 0 0.66568 1 32143 32143 7.4771 1.2852 1 21933000 38920 1055;16047 26045 26540 45609 45609 -0.028962983621340754 LYLEDYLEMIE 11 Unmodified _LYLEDYLEMIE_ 0 0 0 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-2|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3;nc|ENSG00000071243|Q9NXR8-3|ING3 ENSG00000071243|ENST00000315870|ING3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 477.563505 1429.66868 0.42906 0.0002049 -0.89052 -0.00042528 -0.46146 -0.00022038 477.8976138724142 59.468 0.17284 58.977 58.855 59.028 -0.49079 -0.0088369 0.0003449 NaN 7.4771 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1038600 38921 1055;16047 26045 26540 -0.028962983621340754 LYLEFLQKF 9 Unmodified _LYLEFLQKF_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8368530273438 2 600.8368 1199.65905 0.85934 0.00051632 -0.21326 -0.00012813 0.64608 0.00038819 600.8365107135771 91.374 0.34002 91.411 91.219 91.559 0.036499 33 12 4 0 0 0 0.014182 2 50777 50777;50872 85.642 37.296 1 16631000 38922 5847 26046 26541 45610;45611 45610 0.06720346205293026 LYLEFLQKF 9 Unmodified _LYLEFLQKF_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1 ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8363037109375 2 600.8368 1199.65905 0.34334 0.00020629 -0.11444 -6.8757E-05 0.2289 0.00013753 600.8364966629531 99.366 0.13045 93.19 93.113 93.243 -6.1757 20 8 3 0 0 0 0.011739 1 66149 66149 92.653 60.536 1 84926000 38923 5847 26046 26541 45612 45612 0.06720346205293026 LYLEHKGWYSW 11 Unmodified _LYLEHKGWYSW_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.5790710449219 3 494.578588 1480.71394 0.50677 0.00025064 -0.32571 -0.00016109 0.18106 8.9546E-05 494.5783700392093 60.239 0.28529 60.186 60.036 60.321 -0.053059 38 15 3 0 0 0 0.71503 1 32796 32796 2.8433 1.3882 1 26624000 38924 2242 26047 26542 45613 45613 -0.007192669940423002 LYLEHKGWYSW 11 Unmodified _LYLEHKGWYSW_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.9138488769531 3 494.578588 1480.71394 1.0566 0.00052255 -0.61927 -0.00030628 0.43728 0.00021627 494.9127878490246 87.24 0.46942 81.064 80.788 81.257 -6.1757 44 25 2 0 0 0 0.38865 1 57505 57505 22.109 17.703 1 16961000 38925 2242 26047 26542 45614 45614 -0.007192669940423002 LYLEKNAI 8 Unmodified _LYLEKNAI_ 0 0 0 REV__ENSG00000155754|ENST00000439140|C2CD6 REV__ENSG00000155754|ENST00000439140|C2CD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2787170410156 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 79.681 1 79.192 78.692 79.692 -0.48932 0 0 0 0.94749 1 43646 43646 11.114 0 1 + 38926 21285 26048 26543 45615 45615 0.060912420743079565 LYLELTRK 8 Unmodified _LYLELTRK_ 0 0 0 ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3121948242188 2 518.313492 1034.61243 0.54065 0.00028023 -2.2159 -0.0011485 -1.6752 -0.0008683 518.3128968866326 65.206 0.60733 59.03 58.823 59.43 -6.1757 71 33 3 0 0 0 0.66338 1 42314 42314 20.454 1.1966 1 48420000 38927 8224 26049 26544 45616 45616 0.09650906374031365 LYLENIDEF 9 Unmodified _LYLENIDEF_ 0 0 0 ENSG00000077514|ENST00000263681|POLD3;ENST00000532497.5_1_11:74303703-74322559:+|nuORF;ENST00000527458.5_1_11:74303652-74303820:+|nuORF;ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENSG00000077514|ENST00000263681|POLD3;ENST00000532784.5_1_11:74303703-74306426:+|nuORF ENSG00000077514|ENST00000263681|POLD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2823486328125 2 578.282054 1154.54956 0.2975 0.00017204 0.52907 0.00030595 0.82657 0.00047799 578.2823481499497 79.731 0.50227 79.731 79.475 79.977 0 63 20 4 0 0 0 0.095405 2 44313 44214;44313 34.102 5.6156 1 9591900 38928 1220;14930 26050 26545 45617;45618 45618 -0.02153704204670248 LYLEPQGTLF 10 Unmodified _LYLEPQGTLF_ 0 0 0 nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2;nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 nc|ENSG00000065243|Q16513-2|PKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.8168334960938 2 590.816064 1179.61758 0.085036 5.024E-05 0.021207 1.253E-05 0.10624 6.277E-05 590.8158815725338 84.982 0.23241 84.982 84.85 85.082 0 20 13 2 0 0 0 0.62068 1 47065 47065 10.074 2.7847 1 1267200 38929 895 26051 26546 45619 45619 0.034951654459973724 LYLETRKTS 9 Unmodified _LYLETRKTS_ 0 0 0 nc|ENSG00000079387|Q9P0U3-2|SENP1;ENSG00000079387|ENST00000549518|SENP1;ENST00000551592.5_1_12:48474253-48490186:-|nuORF;ENST00000547181.5_1_12:48482540-48495255:-|nuORF nc|ENSG00000079387|Q9P0U3-2|SENP1 nc|ENSG00000079387|Q9P0U3-2|SENP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3135375976562 2 555.811313 1109.60807 0.63558 0.00035326 0.95012 0.00052809 1.5857 0.00088135 556.3128646000577 77.164 3.2088 70.988 68.832 72.041 -6.1757 377 178 3 0 0 0 0.070838 1 49965 49965 39.957 39.957 1 44007000 38930 1276 26052 26547 45620 45620 0.05765397160462271 LYLFAYKEY 9 Unmodified _LYLFAYKEY_ 0 0 0 nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 nc|ENSG00000167723|Q8NET8-3|TRPV3 MSMS AL20221201_MKP_PDAC_01 4 605.3117065429688 2 605.313158 1208.61176 NaN NaN NaN NaN NaN NaN NaN 75.919 1 69.743 69.243 70.243 -6.1757 0 0 0 0.33856 1 49656 49656 23.148 0 1 38931 7663 26053 26548 45621 45621 0.01580066934320712 LYLFDYTDTF 10 Unmodified _LYLFDYTDTF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2951049804688 2 649.302987 1296.59142 0.16317 0.00010594 -4.0818 -0.0026504 -3.9187 -0.0025444 649.2997630786855 51.814 0.3841 51.381 51.346 51.73 -0.43367 30 19 3 0 0 0 0.50944 1 27955 27955 15.847 0.5987 1 6496400 38932 2139 26054 26549 45622 45622 -0.04501148516169451 LYLFLQHCF 9 Carbamidomethyl (C) _LYLFLQHC(Carbamidomethyl (C))F_ LYLFLQHC(1)F LYLFLQHC(82)F 0 1 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000482171.5_1_2:130914007-130915206:-|nuORF;ENST00000473720.5_1_2:130913606-130922014:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MSMS AL20221201_MKP_PDAC_01 4 620.813720703125 2 620.812802 1239.61105 NaN NaN NaN NaN NaN NaN NaN 97.007 1 90.831 90.331 91.331 -6.1757 0 0 0 0.017457 1 64286 64286 81.864 17.628 1 38933 4845 26055 26550 45623 45623 496 0.0008294901363115059 LYLFSFLLY 9 Unmodified _LYLFSFLLY_ 0 0 0 REV__ENST00000262067.4_1_7:16816685-16816727:+|nuORF REV__ENST00000262067.4_1_7:16816685-16816727:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8253784179688 2 589.828443 1177.64233 1.2512 0.00073797 -3.755 -0.0022148 -2.5039 -0.0014769 589.8257884363644 70.953 0.23195 70.988 70.874 71.106 0.035515 16 10 2 0 0 0 0.37804 1 39082 39082 13.508 0 1 3477200 + 38934 25012 26056 26551 45624 45624 0.06061845319391068 LYLGLFNRL 9 Unmodified _LYLGLFNRL_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.829345703125 2 554.829309 1107.64407 -0.12772 -7.086E-05 -0.16777 -9.3085E-05 -0.29549 -0.00016395 554.829328521232 86.289 0.25443 86.351 86.227 86.482 0.061638 26 15 2 0 0 0 0.036857 1 47863 47863 67.344 29.193 1 49489000 38935 6951 26057 26552 45625 45625 0.09454899127990757 LYLGLFNRL 9 Unmodified _LYLGLFNRL_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8306274414062 2 554.829309 1107.64407 NaN NaN NaN NaN NaN NaN NaN 86.449 1 86.507 86.007 87.007 0.05822 0 0 0 0.15231 1 47994 47994 48.346 25.197 1 38936 6951 26057 26552 45626 45626 0.09454899127990757 LYLGMWFF 8 Unmodified _LYLGMWFF_ 0 0 0 REV__ENSG00000172572|ENST00000359062|PDE3A REV__ENSG00000172572|ENST00000359062|PDE3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7676391601562 2 538.767332 1075.52011 0.66164 0.00035647 -1.1104 -0.00059827 -0.4488 -0.0002418 538.7666204160956 81.19 0.27762 80.698 80.582 80.859 -0.49247 33 19 2 0 0 0 0.61999 2 44451 44451;44548 24.21 10.304 1 3125100 + 38937 22661 26058 26553 45627;45628 45627 -0.014628949638563427 LYLGMWFF 8 Unmodified _LYLGMWFF_ 0 0 0 REV__ENSG00000172572|ENST00000359062|PDE3A REV__ENSG00000172572|ENST00000359062|PDE3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.767332 1075.52011 0.66164 0.00035647 -1.1104 -0.00059827 -0.4488 -0.0002418 538.7666204160956 81.19 0.27762 80.698 80.582 80.859 -0.49247 0.012959 -0.00018459 NaN 24.21 33 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3125100 + 38938 22661 26058 26553 -0.014628949638563427 LYLGRAEEF 9 Unmodified _LYLGRAEEF_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2841186523438 2 549.284931 1096.55531 0.83712 0.00045982 -1.3447 -0.00073861 -0.50755 -0.00027879 549.284384278034 51.061 0.57896 51.061 50.833 51.412 0 74 28 4 0 0 0 0.2324 1 28179 28179 20.415 1.1575 1 44264000 38939 598 26059 26554 45629 45629 0.010894390976545765 LYLGRSHFL 9 Unmodified _LYLGRSHFL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2099914550781 3 369.209948 1104.60801 0.62035 0.00022904 -0.73294 -0.00027061 -0.11259 -4.1569E-05 369.2096568217224 49.426 0.28236 49.378 49.231 49.513 -0.047962 40 13 4 0 0 0 0.10734 1 26674 26674 36.506 3.0613 1 13842000 38940 5296;15469 26060 26555 45630 45630 0.05989441951146546 LYLGRSHFL 9 Unmodified _LYLGRSHFL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.311767578125 2 553.311284 1104.60801 0.75778 0.00041929 -2.7644 -0.0015295 -2.0066 -0.0011103 553.3098312399023 49.409 0.18071 49.365 49.255 49.436 -0.04369 12 8 2 0 0 0 0.08691 1 26715 26715 36.127 1.9397 1 1559600 38941 5296;15469 26060 26555 45631 45631 0.05989441951146546 LYLGYSTI 8 Unmodified _LYLGYSTI_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2529296875 2 465.252569 928.490584 NaN NaN NaN NaN NaN NaN NaN 62.382 1 62.382 61.882 62.882 0 0 0 0 0.9706 1 34793 34793 6.3541 0 1 + 38942 17207 26061 26556 45632 45632 0.023478642916757053 LYLHLHQTL 9 Unmodified _LYLHLHQTL_ 0 0 0 ENSG00000186063|ENST00000340020|AIDA;nc|ENSG00000186063|Q96BJ3-2|AIDA;ENST00000456674.1_1_2:11448506-11449064:+|nuORF;nc|ENSG00000186063|Q96BJ3-3|AIDA ENSG00000186063|ENST00000340020|AIDA ENSG00000186063|ENST00000340020|AIDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.885009765625 3 379.885353 1136.63423 1.3125 0.00049861 -0.66523 -0.00025271 0.64729 0.0002459 379.88474983834425 46.657 0.24032 46.624 46.472 46.712 -0.033417 25 11 3 0 0 0 0.038285 1 25117 25117 38.176 25.935 1 3056100 38943 9446 26062 26557 45633 45633 0.07137711122618384 LYLHNHSY 8 Unmodified _LYLHNHSY_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP;ENST00000473914.1_1_5:96332105-96341995:+|nuORF nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7581176757812 2 523.756341 1045.49813 0.45364 0.0002376 2.373 0.0012429 2.8266 0.0014805 523.7578530563851 75.792 0.35345 75.315 75.126 75.479 -0.47714 25 15 2 0 0 0 0.61462 1 41466 41466 24.674 3.8027 1 3532500 38944 2967 26063 26558 45634 45634 -0.02279983388052642 LYLHTFFL 8 Unmodified _LYLHTFFL_ 0 0 0 REV__ENST00000496744.5_1_1:150482366-150482774:+|nuORF REV__ENST00000496744.5_1_1:150482366-150482774:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2935180664062 2 527.292028 1052.5695 1.437 0.00075769 -0.69478 -0.00036635 0.74217 0.00039134 527.2919168431798 64.387 0.66697 58.212 57.955 58.622 -6.1757 46 36 2 0 0 0 0.52622 1 41666 41666 40.449 8.1431 1 18849000 + 38945 27478 26064 26559 45635 45635 0.04532136316629476 LYLHYEQGEL 10 Unmodified _LYLHYEQGEL_ 0 0 0 nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.8138427734375 2 632.814053 1263.61355 -0.85235 -0.00053938 0.96755 0.00061228 0.1152 7.2899E-05 632.8148611890603 77.338 0.28318 76.855 76.673 76.956 -0.4826 35 12 4 0 0 0 0.60623 1 42309 42309 10.824 1.4765 1 2645700 38946 5792 26065 26560 45636 45636 -0.007709240476970081 LYLIFGFQS 9 Unmodified _LYLIFGFQS_ 0 0 0 REV__ENST00000479152.1_1_21:38441850-38444998:-|nuORF REV__ENST00000479152.1_1_21:38441850-38444998:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2914428710938 2 544.294768 1086.57498 -0.66139 -0.00035999 1.0492 0.00057109 0.38784 0.0002111 544.2933057596205 56.649 0.25824 56.164 56.071 56.329 -0.48554 47 14 4 0 0 0 0.08691 1 30742 30742 36.127 2.0246 1 20329000 + 38947 23525 26066 26561 45637 45637 0.03515815108426068 LYLIGDNTK 9 Unmodified _LYLIGDNTK_ 0 0 0 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7868041992188 2 518.787307 1035.56006 0.53244 0.00027622 -1.1655 -0.00060467 -0.6331 -0.00032844 518.7865680364825 38.329 0.48315 38.329 38.22 38.703 0 101 34 4 0 0 0 0.07916 1 20459 20459 37.974 1.9298 1 90239000 38948 7762 26067 26562 45638 45638 0.04370323240414109 LYLIGDNTK 9 Unmodified _LYLIGDNTK_ 0 0 0 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 ENSG00000168427|ENST00000409223|KLHL30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.787353515625 2 518.787307 1035.56006 -0.07648 -3.9677E-05 -0.23474 -0.00012178 -0.31122 -0.00016146 518.7870218690833 38.613 0.32094 38.326 38.154 38.475 -0.28687 36 15 3 0 0 0 0.06294 1 20305 20305 41.84 12.758 1 15845000 38949 7762 26067 26562 45639 45639 0.04370323240414109 LYLIHYEDAL 10 Unmodified _LYLIHYEDAL_ 0 0 0 ENSG00000181074|ENST00000641350|OR52N4 ENSG00000181074|ENST00000641350|OR52N4 ENSG00000181074|ENST00000641350|OR52N4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.5548706054688 3 417.22029 1248.63904 0.41192 0.00017186 1.2518 0.00052228 1.6637 0.00069414 417.22086939199414 23.221 0.23871 20.442 20.359 20.597 -2.7784 36 24 2 0 0 0 0.56675 2 12533 12533;12645 12.873 0.43853 1 8577000 38950 8949 26068 26563 45640;45641 45640 0.024665504747190425 LYLIYHFT 8 Unmodified _LYLIYHFT_ 0 0 0 REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF REV__ENST00000339438.10_1_1:115260407-115260479:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2882690429688 2 535.289485 1068.56442 0.75285 0.00040299 -1.4721 -0.000788 -0.71926 -0.00038501 535.2889312875606 46.214 0.29156 46.181 46.038 46.329 -0.033417 28 13 3 0 0 0 0.44122 1 24845 24845 40.449 0 1 6083300 + 38951 25682 26069 26564 45642 45642 0.032878324539979076 LYLKALEGF 9 Unmodified _LYLKALEGF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8033447265625 2 527.302593 1052.59063 0.60861 0.00032092 0.15549 8.1992E-05 0.7641 0.00040291 527.3031028475626 73.722 0.42991 73.246 72.932 73.362 -0.47588 26 18 2 0 0 0 0.23158 1 40335 40335 20.454 4.6064 1 2703900 38952 3186 26070 26565 45643 45643 0.06644101625443 LYLKALEGF 9 Unmodified _LYLKALEGF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3023071289062 2 527.302593 1052.59063 0.15429 8.1356E-05 0.12268 6.4692E-05 0.27697 0.00014605 527.3027641027709 73.186 0.31291 73.227 73.068 73.381 0.041733 41 14 5 0 0 0 0.009483 1 40294 40294 81.89 38.032 1 14517000 38953 3186 26070 26565 45644 45644 0.06644101625443 LYLKALEGF 9 Unmodified _LYLKALEGF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.302978515625 2 527.302593 1052.59063 0.47068 0.00024819 0.10837 5.7144E-05 0.57905 0.00030534 527.3030700489503 92.897 0.47272 86.722 86.415 86.887 -6.1757 51 29 2 0 0 0 0.0082353 2 61429 61306;61429 96.111 43.843 1 38157000 38954 3186 26070 26565 45645;45646 45646 0.06644101625443 LYLKESLEL 9 Unmodified _LYLKESLEL_ 0 0 0 REV__ENST00000477846.5_1_1:15707235-15714865:+|nuORF REV__ENST00000477846.5_1_1:15707235-15714865:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.3212890625 2 554.31844 1106.62233 0.83719 0.00046407 0.75392 0.00041791 1.5911 0.00088198 554.319073220191 64.424 0.23815 63.939 63.821 64.059 -0.48512 18 10 2 0 0 0 0.18255 1 35140 35140 32.786 3.7041 1 2094800 + 38955 20582 26071 26566 45647 45647 0.07328049588750218 LYLKEVTKF 9 Unmodified _LYLKEVTKF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8934631347656 3 380.893625 1139.65905 NaN NaN NaN NaN NaN NaN NaN 48.67 1 48.298 47.798 48.798 -0.37172 0 0 0 0.10415 1 26128 26128 42.312 13.818 1 38956 3269;553 26072 26567 45648 45648 0.09480346205327805 LYLKEVTKF 9 Unmodified _LYLKEVTKF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8943786621094 3 380.893625 1139.65905 0.34212 0.00013031 0.47169 0.00017966 0.81381 0.00030998 380.8937250385299 48.375 0.29639 48.331 48.137 48.434 -0.04369 26 14 2 0 0 0 0.073961 1 26059 26059 39.213 16.555 1 26183000 38957 3269;553 26072 26567 45649 45649 0.09480346205327805 LYLKEVTKF 9 Unmodified _LYLKEVTKF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8385009765625 2 570.8368 1139.65905 0.37295 0.00021289 0.66645 0.00038044 1.0394 0.00059333 570.8373494587482 48.394 0.17664 48.35 48.218 48.395 -0.04369 16 8 2 0 0 0 0.018846 1 26075 26075 61.09 28.304 1 6516800 38958 3269;553 26072 26567 45650 45650 0.09480346205327805 LYLKEVTKF 9 Unmodified _LYLKEVTKF_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC;ENSG00000025039|ENST00000369415|RRAGD ENSG00000116954|ENST00000373001|RRAGC MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.894287109375 3 380.893625 1139.65905 1.667 0.00063496 -0.72357 -0.0002756 0.94346 0.00035936 380.8933056357566 53.7 0.40511 47.896 47.676 48.081 -5.8042 44 25 2 0 0 0 0.033466 2 33913 33913;34057 53.47 20.025 1 42248000 38959 3269;553 26072 26567 45651;45652 45651 0.09480346205327805 LYLKLWNLI 9 Unmodified _LYLKLWNLI_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.36572265625 2 588.362985 1174.71142 4.1352 0.002433 -1.1089 -0.00065246 3.0263 0.0017805 588.3629078268181 99.312 0.11607 99.284 99.216 99.332 -0.028282 8 3 3 0 0 0 0.012148 1 55166 55166 74.423 17.881 1 4233800 38960 9309 26073 26568 45653 45653 0.13104929338942384 LYLKLWNLI 9 Unmodified _LYLKLWNLI_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3623046875 2 588.362985 1174.71142 1.473 0.00086664 -0.31469 -0.00018515 1.1583 0.00068149 588.3626722336172 100.95 0.09758 94.77 94.717 94.815 -6.1757 13 5 3 0 0 0 0.0048787 1 67627 67627 117.6 43.202 1 41265000 38961 9309 26073 26568 45654 45654 0.13104929338942384 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8585205078125 2 590.858067 1179.70158 0.3486 0.00020597 -0.14927 -8.8197E-05 0.19933 0.00011778 590.8579212509569 50.923 0.31812 50.869 50.708 51.026 -0.053871 50 15 4 0 0 0 0.0081376 2 27499 27499;27599 107.19 34.219 1 23875000 38962 2556 26074 26569 45655;45656 45655 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2409973144531 3 394.241137 1179.70158 0.26104 0.00010291 -0.33791 -0.00013322 -0.076874 -3.0307E-05 394.24098841545964 50.908 1.6656 50.854 50.628 52.294 -0.053871 162 82 5 0 0 0 0.47869 1 27553 27553 17.443 4.57 1 251190000 38963 2556 26074 26569 45657 45657 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2413635253906 3 394.241137 1179.70158 0.48487 0.00019116 0.42728 0.00016845 0.91215 0.00035961 394.24125483109884 56.188 0.66829 50.211 49.913 50.581 -5.9769 123 38 4 0 0 0 0.078742 2 35684 35684;35813 51.415 16.483 1 450010000 38964 2556 26074 26569 45658;45659 45658 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8583374023438 2 590.858067 1179.70158 0.12442 7.3512E-05 0.27721 0.00016379 0.40162 0.0002373 590.8581716680642 56.142 0.45959 50.165 49.969 50.428 -5.9769 68 26 3 0 0 0 0.0022709 2 35864 35733;35864 92.491 35.718 1 151560000 38965 2556 26074 26569 45660;45661 45661 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2421264648438 3 394.241137 1179.70158 1.0557 0.00041621 0.075427 2.9736E-05 1.1312 0.00044595 394.241266719756 73.505 1.0939 67.33 66.351 67.445 -6.1757 90 54 2 0 0 0 0.10406 3 47899 47645;47767;47899 45.74 15.899 1 27594000 38966 2556 26074 26569 45662;45663;45664 45664 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5757446289062 3 394.241137 1179.70158 1.1763 0.00046374 0.037603 1.4825E-05 1.2139 0.00047856 394.2411146704641 74.35 2.2542 68.175 67.326 69.58 -6.1757 343 118 4 0 0 0 0.087164 7 48142 48142;48251;48491;48605;48717;49096;49352 49.527 17.49 1 119030000 38967 2556 26074 26569 45665;45666;45667;45668;45669;45670;45671 45665 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8580322265625 2 590.858067 1179.70158 0.83423 0.00049291 -0.34795 -0.00020559 0.48628 0.00028732 590.8577058647439 74.298 1.931 68.123 67.464 69.396 -6.1757 226 101 3 0 0 0 0.0015532 10 48719 48220;48350;48471;48601;48719;48848;48972;49102;49251;49389 144.35 52.605 1 30696000 38968 2556 26074 26569 45672;45673;45674;45675;45676;45677;45678;45679;45680;45681 45676 0.118917413335339 LYLKVKGNVF 10 Unmodified _LYLKVKGNVF_ 0 0 0 ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF ENSG00000108298|ENST00000225430|RPL19 ENSG00000108298|ENST00000225430|RPL19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 394.241137 1179.70158 0.26104 0.00010291 -0.33791 -0.00013322 -0.076874 -3.0307E-05 394.24098841545964 50.908 1.6656 50.854 50.628 52.294 -0.053871 0 0 NaN 17.443 162 82 5 NaN NaN NaN NaN 0 NaN NaN 0 251190000 38969 2556 26074 26569 0.118917413335339 LYLKVLERF 9 Unmodified _LYLKVLERF_ 0 0 0 REV__ENSG00000198812|ENST00000361484|LRRC10 REV__ENSG00000198812|ENST00000361484|LRRC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2415771484375 3 394.241137 1179.70158 0.26104 0.00010291 -0.33791 -0.00013322 -0.076874 -3.0307E-05 394.24098841545964 50.908 1.6656 50.854 50.628 52.294 -0.053871 162 82 5 0 0 0 0.54213 1 27757 27757 4.897 0 1 251190000 + 38970 24065 26075 26570 45682 45682 0.118917413335339 LYLKVLERF 9 Unmodified _LYLKVLERF_ 0 0 0 REV__ENSG00000198812|ENST00000361484|LRRC10 REV__ENSG00000198812|ENST00000361484|LRRC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2413635253906 3 394.241137 1179.70158 1.0557 0.00041621 0.075427 2.9736E-05 1.1312 0.00044595 394.241266719756 73.505 1.0939 67.33 66.351 67.445 -6.1757 90 54 2 0 0 0 0.50598 1 48029 48029 7.1017 0.90987 1 27594000 + 38971 24065 26075 26570 45683 45683 0.118917413335339 LYLLCSCSKLL 11 Unmodified _LYLLCSCSKLL_ 0 0 0 ENST00000375224.1_1_1:19431196-19431406:-|nuORF ENST00000375224.1_1_1:19431196-19431406:-|nuORF ENST00000375224.1_1_1:19431196-19431406:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.0440063476562 3 419.231144 1254.6716 1.1318 0.00047447 1.8926 0.00079344 3.0244 0.0012679 419.23200172852194 18.811 0.17849 16.189 16.126 16.304 -2.6215 17 10 2 0 0 0 0.29799 1 9995 9995 6.6235 0 1 3215400 38972 12472 26076 26571 45684 45684 0.05445298281711075 LYLLKLHGI 9 Unmodified _LYLLKLHGI_ 0 0 0 ENSG00000100209|ENST00000216027|HSCB ENSG00000100209|ENST00000216027|HSCB ENSG00000100209|ENST00000216027|HSCB MSMS AL20221201_MKP_PDAC_01 4 357.2308044433594 3 357.23046 1068.66955 NaN NaN NaN NaN NaN NaN NaN 92.385 1 86.209 85.709 86.709 -6.1757 0 0 0 0.81961 1 61093 61093 5.2969 0 1 38973 1769 26077 26572 45685 45685 0.13796373650416172 LYLLNTTKL 9 Unmodified _LYLLNTTKL_ 0 0 0 nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1 nc|ENSG00000076242|P40692-2|MLH1 nc|ENSG00000076242|P40692-2|MLH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8287963867188 2 539.828975 1077.6434 0.72431 0.000391 -0.40203 -0.00021703 0.32228 0.00017398 539.8287359481853 65.456 0.34215 65.456 65.282 65.624 1.5259E-05 44 15 4 0 0 0 0.022461 2 35848 35848;35945 75.761 23.492 1 34818000 38974 1182 26078 26573 45686;45687 45686 0.10768059688257381 LYLLSGSIIAV 11 Unmodified _LYLLSGSIIAV_ 0 0 0 ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2 ENST00000452340.7_1_14:77746025-77787024:-|nuORF ENST00000452340.7_1_14:77746025-77787024:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.849853515625 2 574.849907 1147.68526 0.81535 0.00046871 0.38951 0.00022391 1.2049 0.00069262 574.8499592841986 66.87 0.27553 66.888 66.753 67.029 0.018036 26 12 3 0 0 0 0.15484 1 36690 36690 36.127 0 1 5241500 38975 407 26079 26574 45688 45688 0.11732615376809008 LYLLSGSIIAV 11 Unmodified _LYLLSGSIIAV_ 0 0 0 ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2 ENST00000452340.7_1_14:77746025-77787024:-|nuORF ENST00000452340.7_1_14:77746025-77787024:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.849907 1147.68526 0.60508 0.00034783 0.91808 0.00052776 1.5232 0.00087559 574.8500859111635 67.352 0.24918 66.87 66.758 67.007 -0.48219 -0.0089815 0.0003684 NaN 36.127 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1073800 38976 407 26079 26574 0.11732615376809008 LYLLTHQLK 9 Unmodified _LYLLTHQLK_ 0 0 0 ENST00000374994.8_2_9:101908888-101910004:+|nuORF ENST00000374994.8_2_9:101908888-101910004:+|nuORF ENST00000374994.8_2_9:101908888-101910004:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8978576660156 3 376.89737 1127.67028 1.5189 0.00057247 -0.43979 -0.00016576 1.0791 0.00040671 376.89735478564705 50.078 0.27585 44.538 44.357 44.633 -5.5391 23 17 2 0 0 0 0.37578 1 31397 31397 13.615 4.0709 1 9274600 38977 12466 26080 26575 45689 45689 0.11155168299455909 LYLNNRCDRGR 11 Unmodified _LYLNNRCDRGR_ 0 0 0 REV__ENSG00000066629|ENST00000262233|EML1 REV__ENSG00000066629|ENST00000262233|EML1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.3509521484375 2 690.351677 1378.6888 NaN NaN NaN NaN NaN NaN NaN 38.396 1 38.396 37.896 38.896 0 0 0 0 0.92234 1 20506 20506 6.2058 0 1 + 38978 17405 26081 26576 45690 45690 0.014603549316916542 LYLPADEFPE 10 Unmodified _LYLPADEFPE_ 0 0 0 ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A ENSG00000075673|ENST00000381946|ATP12A ENSG00000075673|ENST00000381946|ATP12A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5282287597656 3 398.529012 1192.56521 -0.46677 -0.00018602 -0.99704 -0.00039735 -1.4638 -0.00058337 398.52878247131036 20.834 0.48509 20.834 20.425 20.91 0 85 55 3 0 0 0 0.63089 1 10467 10467 9.544 2.9136 1 5008400 38979 1166 26082 26577 45691 45691 -0.023374176875904595 LYLPHLTLF 9 Unmodified _LYLPHLTLF_ 0 0 0 ENSG00000182372|ENST00000331222|CLN8;ENST00000523237.1_1_8:1721944-1728730:+|nuORF ENSG00000182372|ENST00000331222|CLN8 ENSG00000182372|ENST00000331222|CLN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8272094726562 2 558.826235 1115.63792 2.5765 0.0014398 -0.23162 -0.00012943 2.3449 0.0013104 558.8260249734604 96.013 0.22305 96.017 95.892 96.115 0.0041504 12 7 2 0 0 0 0.03327 1 53346 53346 53.576 25.089 1 1783700 38980 9050 26083 26578 45692 45692 0.08472380896455434 LYLPHLTLF 9 Unmodified _LYLPHLTLF_ 0 0 0 ENSG00000182372|ENST00000331222|CLN8;ENST00000523237.1_1_8:1721944-1728730:+|nuORF ENSG00000182372|ENST00000331222|CLN8 ENSG00000182372|ENST00000331222|CLN8 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 558.826235 1115.63792 1.1319 0.00063253 1.6165 0.00090337 2.7484 0.0015359 558.8267360262084 102.29 0.12014 96.112 96.027 96.148 -6.1757 0.047556 0.0017808 NaN 53.576 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2172900 38981 9050 26083 26578 0.08472380896455434 LYLPSFFTY 9 Unmodified _LYLPSFFTY_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7955932617188 2 575.794601 1149.57465 1.1775 0.00067797 0.67004 0.00038581 1.8475 0.0010638 575.7949096116987 100.56 0.12958 100.52 100.45 100.58 -0.04216 14 4 5 0 0 0 0.10925 1 55880 55880 32.117 8.9685 1 164510000 38982 4927 26084 26579 45693 45693 0.005843953885914743 LYLPSFFTY 9 Unmodified _LYLPSFFTY_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7955932617188 2 575.794601 1149.57465 1.03 0.00059305 -0.0010763 -6.1972E-07 1.0289 0.00059243 575.794469933574 101.31 0.16421 95.134 95.046 95.211 -6.1757 35 9 5 0 0 0 0.03327 1 67944 67944 53.576 34.319 1 1097400000 38983 4927 26084 26579 45694 45694 0.005843953885914743 LYLPTLTHF 9 Unmodified _LYLPTLTHF_ 0 0 0 ENST00000537473.2_1_12:57058103-57058217:-|nuORF ENST00000537473.2_1_12:57058103-57058217:-|nuORF ENST00000537473.2_1_12:57058103-57058217:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.313720703125 2 552.808042 1103.60153 0.119 6.5785E-05 1.2121 0.00067005 1.3311 0.00073584 552.8082020053182 80.317 0.2056 80.375 80.269 80.474 0.057587 26 10 3 0 0 0 0.038285 1 44364 44364 50.855 27.707 1 31696000 38984 14993 26085 26580 45695 45695 0.05387503999736509 LYLPTLTHF 9 Unmodified _LYLPTLTHF_ 0 0 0 ENST00000537473.2_1_12:57058103-57058217:-|nuORF ENST00000537473.2_1_12:57058103-57058217:-|nuORF ENST00000537473.2_1_12:57058103-57058217:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8099975585938 2 552.808042 1103.60153 1.2285 0.00067913 1.5133 0.00083658 2.7418 0.0015157 552.8087064103104 96.034 0.58701 89.858 89.535 90.122 -6.1757 55 35 2 0 0 0 0.010877 2 63524 63524;63648 77.984 47.76 1 98233000 38985 14993 26085 26580 45696;45697 45696 0.05387503999736509 LYLPVRFS 8 Unmodified _LYLPVRFS_ 0 0 0 REV__ENST00000442060.7_1_5:118860916-118866997:+|nuORF REV__ENST00000442060.7_1_5:118860916-118866997:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.740478515625 2 497.789653 993.564752 1.5623 0.00077771 -4.1795 -0.0020805 -2.6172 -0.0013028 497.7875124733609 58.85 0.079216 52.776 52.719 52.798 -6.0745 5 3 2 0 0 0 8.7369 1 37737 37737 26.341 6.9023 1 4926400 + 38986 27097 26086 26581 45698 45698 0.06771252173848552 LYLPVRFS 8 Unmodified _LYLPVRFS_ 0 0 0 REV__ENST00000442060.7_1_5:118860916-118866997:+|nuORF REV__ENST00000442060.7_1_5:118860916-118866997:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.789653 993.564752 0.38815 0.00019322 -3.4618 -0.0017232 -3.0737 -0.00153 497.7877074254723 53.462 0.18723 53.01 52.9 53.087 -0.45173 0.11725 8.7574E-05 NaN 26.341 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 973310 + 38987 27097 26086 26581 0.06771252173848552 LYLQIHSKF 9 Unmodified _LYLQIHSKF_ 0 0 0 ENST00000498289.5_1_1:169773308-169819597:+|nuORF;nc|ENSG00000000460|Q9NSG2-2|FIRRM;ENSG00000000460|ENST00000359326|C1orf112 ENST00000498289.5_1_1:169773308-169819597:+|nuORF ENST00000498289.5_1_1:169773308-169819597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5538024902344 3 383.553603 1147.63898 0.41981 0.00016102 -0.62479 -0.00023964 -0.20498 -7.862E-05 383.55335881311055 49.229 0.22456 49.185 49.07 49.295 -0.04369 25 10 3 0 0 0 0.1773 1 26594 26594 18.373 3.1246 1 1507400 38988 251 26087 26582 45699 45699 0.07106595265372562 LYLQLCQHQGE 11 Unmodified _LYLQLCQHQGE_ 0 0 0 ENST00000570320.5_1_16:24946892-24946940:-|nuORF ENST00000570320.5_1_16:24946892-24946940:-|nuORF ENST00000570320.5_1_16:24946892-24946940:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.8281860351562 2 666.324262 1330.63397 -0.24998 -0.00016657 2.1491 0.001432 1.8991 0.0012654 666.8268145857996 98.831 0.11356 92.655 92.602 92.716 -6.1757 14 8 2 0 0 0 0.10451 1 65640 65640 41.956 12.874 1 39643000 38989 15476 26088 26583 45700 45700 -0.01812076659575723 LYLQPGALL 9 Unmodified _LYLQPGALL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2990417480469 2 494.29731 986.580068 0.92383 0.00045665 -0.11797 -5.8315E-05 0.80586 0.00039833 494.2974628480354 92.341 0.90364 86.166 85.823 86.726 -6.1757 97 55 3 0 0 0 0.052168 1 61341 61341 44.407 0.54872 1 29991000 38990 4151 26089 26584 45701 45701 0.08624118971033568 LYLQRVAEL 9 Unmodified _LYLQRVAEL_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8229370117188 2 552.824224 1103.63389 0.64625 0.00035726 -2.9136 -0.0016107 -2.2673 -0.0012534 552.8224386232655 65.085 0.75626 58.91 58.606 59.362 -6.1757 71 41 2 0 0 0 0.05483 1 42194 42194 43.772 3.8227 1 17647000 38991 3003 26090 26585 45702 45702 0.08622291402753035 LYLQSPHSY 9 Unmodified _LYLQSPHSY_ 0 0 0 ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4;ENST00000480171.7_1_2:159519375-159537186:+|nuORF ENSG00000144283|ENST00000389759|PKP4 ENSG00000144283|ENST00000389759|PKP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.2764282226562 2 554.277106 1106.53966 0.89725 0.00049732 -0.64303 -0.00035642 0.25421 0.00014091 554.2763618701175 57.395 0.25667 57.329 57.181 57.438 -0.066036 30 12 3 0 0 0 0.10734 1 31231 31231 32.305 2.0807 1 8673000 38992 5597 26091 26586 45703 45703 -0.009348474193984657 LYLQVDQR 8 Unmodified _LYLQVDQR_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7855224609375 2 517.785099 1033.55564 -0.33867 -0.00017536 -0.499 -0.00025838 -0.83767 -0.00043374 517.7848814707393 34.484 0.17693 34.293 34.174 34.351 -0.19132 13 7 2 0 0 0 0.36356 1 18016 18016 48.346 0 1 3025400 38993 9633 26092 26587 45704 45704 0.040208588175119075 LYLRALAP 8 Unmodified _LYLRALAP_ 0 0 0 ENST00000488498.2_1_1:156377231-156377309:-|nuORF ENST00000488498.2_1_1:156377231-156377309:-|nuORF ENST00000488498.2_1_1:156377231-156377309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.7847595214844 2 458.78437 915.554188 0.61925 0.0002841 -0.54433 -0.00024973 0.074922 3.4373E-05 458.7841312481968 50.914 0.21393 50.86 50.728 50.942 -0.053871 15 10 2 0 0 0 0.50586 1 27527 27527 34.187 0 1 1837800 38994 14222 26093 26588 45705 45705 0.09303269519398327 LYLRGLVYL 9 Unmodified _LYLRGLVYL_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3407592773438 2 555.33951 1108.66447 2.0364 0.0011309 -0.39714 -0.00022055 1.6392 0.00091033 555.3393256167229 81.81 0.34659 81.87 81.659 82.006 0.059929 29 13 3 0 0 0 0.013323 1 45210 45210 71.134 37.031 1 8443500 38995 2306 26094 26589 45706 45706 0.11448069787797976 LYLRGLVYL 9 Unmodified _LYLRGLVYL_ 0 0 0 ENSG00000105339|ENST00000519811|DENND3;nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF ENSG00000105339|ENST00000519811|DENND3 ENSG00000105339|ENST00000519811|DENND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3399047851562 2 555.33951 1108.66447 0.76461 0.00042462 0.69294 0.00038482 1.4575 0.00080943 555.3397633967392 98.615 0.14142 92.44 92.352 92.493 -6.1757 18 10 2 0 0 0 0.022193 1 65416 65416 61.357 27.255 1 74868000 38996 2306 26094 26589 45707 45707 0.11448069787797976 LYLRLFKLKK 10 Unmodified _LYLRLFKLKK_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2969665527344 3 441.295464 1320.86456 NaN NaN NaN NaN NaN NaN NaN 3.6185 1 3.6062 3.1062 4.1062 -0.012334 0 0 0 1.0047 1 1839 1839 0.15932 0.064481 1 38997 1080 26095 26590 45708 45708 0.21696544455403455 LYLRQIMKF 9 Oxidation (M) _LYLRQIM(Oxidation (M))KF_ LYLRQIM(1)KF LYLRQIM(44)KF 0 0 1 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.90234375 3 409.902126 1226.68455 0.28668 0.00011751 0.14747 6.0448E-05 0.43415 0.00017796 409.9021463085908 47.715 0.2485 47.676 47.6 47.849 -0.038643 28 11 3 0 0 0 0.05483 1 25717 25717 43.772 22.235 1 6162600 38998 6487 26096 26591 45709 45709 1137 0.08027497456100718 LYLRQIMKF 9 Unmodified _LYLRQIMKF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5714416503906 3 404.570488 1210.68964 1.1647 0.00047122 0.62956 0.0002547 1.7943 0.00072592 404.57067942798585 93.89 0.18475 87.714 87.603 87.788 -6.1757 26 10 3 0 0 0 0.05483 1 62154 62154 43.772 25.051 1 25197000 38999 6487 26096 26592 45710 45710 0.0927180131870955 LYLRQIMKF 9 Unmodified _LYLRQIMKF_ 0 0 0 ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A ENSG00000156875|ENST00000370152|MFSD14A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.2808227539062 2 606.352094 1210.68964 0.69342 0.00042046 -0.29907 -0.00018134 0.39435 0.00023911 606.3514996757247 93.894 0.13276 87.719 87.636 87.769 -6.1757 10 7 2 0 0 0 0.017416 1 62151 62151 74.929 51.781 1 6540100 39000 6487 26096 26592 45711 45711 0.0927180131870955 LYLRTYFL 8 Unmodified _LYLRTYFL_ 0 0 0 REV__ENSG00000106397|ENST00000223127|PLOD3 REV__ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8128051757812 2 544.810585 1087.60662 0.31256 0.00017029 1.9344 0.0010539 2.2469 0.0012242 544.8119038911406 99.693 0.14119 93.517 93.432 93.574 -6.1757 13 8 2 0 0 0 0.61462 1 66488 66488 24.674 1.5255 1 31275000 + 39001 18505 26097 26593 45712 45712 0.06631807862368078 LYLSGETRS 9 Unmodified _LYLSGETRS_ 0 0 0 ENST00000529192.1_3_11:46638262-46638355:-|nuORF ENST00000529192.1_3_11:46638262-46638355:-|nuORF ENST00000529192.1_3_11:46638262-46638355:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2667236328125 2 513.266739 1024.51892 -0.056134 -2.8812E-05 1.1442 0.00058728 1.0881 0.00055847 513.2670073248613 70.752 0.50569 70.752 70.449 70.954 0 102 46 3 0 0 0 0.1773 1 39407 39407 25.399 25.399 1 5317500 39002 14869 26098 26594 45713 45713 0.007645622009476938 LYLSGETRS 9 Unmodified _LYLSGETRS_ 0 0 0 ENST00000529192.1_3_11:46638262-46638355:-|nuORF ENST00000529192.1_3_11:46638262-46638355:-|nuORF ENST00000529192.1_3_11:46638262-46638355:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2677001953125 2 513.266739 1024.51892 0.3809 0.0001955 1.4498 0.00074413 1.8307 0.00093963 513.2674055960512 71.211 0.53874 70.733 70.459 70.998 -0.47736 60 23 3 0 0 0 0.10734 1 38991 38991 32.305 32.305 1 7055800 39003 14869 26098 26594 45714 45714 0.007645622009476938 LYLSKAERF 9 Unmodified _LYLSKAERF_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;ENST00000519409.1_1_8:101252858-101271281:+|nuORF ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2143249511719 3 376.213358 1125.61824 2.014 0.0007577 0.78576 0.00029561 2.7998 0.0010533 376.21378143328286 41.858 0.34732 37.251 37.047 37.394 -4.6079 41 21 3 0 0 0 0.21377 1 25158 25158 21.799 3.4264 1 8857000 39004 2210 26099 26595 45715 45715 0.060460048857066795 LYLSSPKPY 9 Unmodified _LYLSSPKPY_ 0 0 0 ENST00000474353.6_1_10:97106208-97250794:-|nuORF ENST00000474353.6_1_10:97106208-97250794:-|nuORF ENST00000474353.6_1_10:97106208-97250794:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.2915649414062 2 534.292225 1066.5699 NaN NaN NaN NaN NaN NaN NaN 99.852 1 93.677 93.177 94.177 -6.1757 0 0 0 0.29524 1 66627 66627 25.399 3.6527 1 39005 13936 26100 26596 45716 45716 0.039275112458199146 LYLSSQSLLF 10 Unmodified _LYLSSQSLLF_ 0 0 0 ENST00000394249.7_1_15:91509410-91509812:-|nuORF ENST00000394249.7_1_15:91509410-91509812:-|nuORF ENST00000394249.7_1_15:91509410-91509812:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8841247558594 3 390.885018 1169.63323 NaN NaN NaN NaN NaN NaN NaN 55.96 1 55.891 55.391 56.391 -0.068737 0 0 0 0.96627 1 30422 30422 2.086 0 1 39006 12732 26101 26597 45717 45717 0.05519451963027677 LYLTDGVP 8 Unmodified _LYLTDGVP_ 0 0 0 ENST00000534093.5_3_11:62379321-62382308:+|nuORF;ENSG00000149489|ENST00000278833|ROM1 ENST00000534093.5_3_11:62379321-62382308:+|nuORF ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.46630859375 1 877.466561 876.459284 0.98925 0.00086803 -0.34835 -0.00030566 0.6409 0.00056237 877.4659082230249 83.473 0.42041 77.297 77.146 77.567 -6.1757 35 21 2 0 0 0 0.19755 1 54958 54958 70.865 0 1 11766000 39007 6013 26102 26598 45718 45718 0.01611291257574976 LYLTHMLKI 9 Unmodified _LYLTHMLKI_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8919982910156 3 377.891339 1130.65219 0.93735 0.00035422 0.68286 0.00025805 1.6202 0.00061226 377.89189497461615 93.524 0.15218 87.348 87.26 87.412 -6.1757 14 9 2 0 0 0 0.082934 1 61921 61921 37.075 9.4458 1 4693700 39008 2727 26103 26599 45719 45719 0.09208710053098912 LYLTIARQL 9 Unmodified _LYLTIARQL_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.83544921875 2 545.834591 1089.65463 0.94725 0.00051704 0.18507 0.00010102 1.1323 0.00061806 545.8346359268799 66.024 0.19063 66.033 65.911 66.101 0.0095596 22 9 3 0 0 0 0.06294 1 36217 36217 41.84 7.7372 1 4743900 39009 16205 26104 26600 45720 45720 0.11338881782421595 LYLTLQTLAL 10 Unmodified _LYLTLQTLAL_ 0 0 0 REV__ENSG00000103599|ENST00000335894|IQCH REV__ENSG00000103599|ENST00000335894|IQCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8509521484375 2 574.849907 1147.68526 0.59897 0.00034432 0.63242 0.00036354 1.2314 0.00070786 574.8501795081824 64.815 0.21692 64.33 64.253 64.47 -0.48512 16 9 2 0 0 0 0.48505 1 35398 35398 17.113 1.8644 1 958490 + 39010 18319 26105 26601 45721 45721 0.11732615376809008 LYLTLQTLAL 10 Unmodified _LYLTLQTLAL_ 0 0 0 REV__ENSG00000103599|ENST00000335894|IQCH REV__ENSG00000103599|ENST00000335894|IQCH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.849907 1147.68526 0.59897 0.00034432 0.63242 0.00036354 1.2314 0.00070786 574.8501795081824 64.815 0.21692 64.33 64.253 64.47 -0.48512 0.0016379 0.00033947 NaN 17.113 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 958490 + 39011 18319 26105 26601 0.11732615376809008 LYLTLQTLAL 10 Unmodified _LYLTLQTLAL_ 0 0 0 REV__ENSG00000103599|ENST00000335894|IQCH REV__ENSG00000103599|ENST00000335894|IQCH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.849907 1147.68526 0.96269 0.0005534 -0.16141 -9.2785E-05 0.80128 0.00046062 575.3508786874361 64.337 0.16246 64.327 64.214 64.377 -0.010529 -0.0016379 -0.00057319 NaN 17.113 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1990200 + 39012 18319 26105 26601 0.11732615376809008 LYLTNCEKL 9 Carbamidomethyl (C) _LYLTNC(Carbamidomethyl (C))EKL_ LYLTNC(1)EKL LYLTNC(62)EKL 0 1 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.300537109375 2 577.299724 1152.5849 0.50274 0.00029023 0.5908 0.00034107 1.0935 0.0006313 577.3001956231288 52.069 0.40807 46.335 46.107 46.515 -5.7345 65 27 3 0 0 0 0.021948 2 32882 32747;32882 61.602 32.52 1 169270000 39013 6727 26106 26602 45722;45723 45723 659 0.014706350514870792 LYLTPNDML 9 Unmodified _LYLTPNDML_ 0 0 0 REV__nc|ENSG00000106290|P49848-4|TAF6 REV__nc|ENSG00000106290|P49848-4|TAF6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7763061523438 2 540.275718 1078.53688 0.28188 0.00015229 -3.967 -0.0021433 -3.6852 -0.001991 540.2730103428244 90.635 0.30854 90.14 89.933 90.242 -0.49458 16 14 2 0 0 0 0.20727 1 49558 49558 7.9102 1.187 1 443830 + 39014 18497 26107 26603 45724 45724 0.0007556113146165444 LYLTQCQQQL 10 Unmodified _LYLTQCQQQL_ 0 0 0 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.3173828125 2 619.315906 1236.61726 0.59394 0.00036784 0.3247 0.00020109 0.91864 0.00056893 619.3162842539809 52.161 0.21877 51.728 51.59 51.809 -0.43367 21 10 3 0 0 0 0.42068 1 28187 28187 20.454 2.3073 1 1593500 39015 8754 26108 26604 45725 45725 0.008414224544821991 LYLVASNTTTW 11 Unmodified _LYLVASNTTTW_ 0 0 0 ENSG00000160446|ENST00000372663|ZDHHC12;nc|ENSG00000160446|Q96GR4-3|ZDHHC12 ENSG00000160446|ENST00000372663|ZDHHC12 ENSG00000160446|ENST00000372663|ZDHHC12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.2977905273438 2 634.829703 1267.64485 2.1682 0.0013764 4.3348 0.0027518 6.503 0.0041283 634.8325121751816 100.07 0.11179 100.03 99.962 100.07 -0.036301 6 3 2 0 0 0 0.29817 1 55544 55544 8.1555 2.9249 1 1942500 39016 6728 26109 26605 45726 45726 0.021736489863542374 LYLYRYEH 8 Unmodified _LYLYRYEH_ 0 0 0 REV__nc|ENSG00000121753|O60241-4|ADGRB2 REV__nc|ENSG00000121753|O60241-4|ADGRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7943725585938 2 578.792924 1155.57129 1.2284 0.00071101 -1.916 -0.001109 -0.68755 -0.00039795 578.7920741267586 79.628 1.9471 73.452 72.422 74.369 -6.1757 347 114 5 0 0 0 0.40035 3 52637 51844;51981;52637 44.407 2.3125 1 192730000 + 39017 19307 26110 26606 45727;45728;45729 45729 -0.0002685466542970971 LYLYSVWY 8 Unmodified _LYLYSVWY_ 0 0 0 REV__nc|ENSG00000113327|P18507-3|GABRG2 REV__nc|ENSG00000113327|P18507-3|GABRG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7799682617188 2 553.781493 1105.54843 NaN NaN NaN NaN NaN NaN NaN 73.288 1 72.812 72.312 73.312 -0.47588 0 0 0 0.97444 1 40106 40106 2.8892 0.58649 1 + 39018 29578 26111 26607 45730 45730 -0.00011873782887050766 LYMAWLEAL 9 Unmodified _LYMAWLEAL_ 0 0 0 nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2879028320312 2 555.288628 1108.5627 0.75629 0.00041996 -1.4095 -0.00078269 -0.65323 -0.00036273 555.2878132327306 101.74 0.079269 95.56 95.503 95.582 -6.1757 8 4 3 0 0 0 0.023761 1 68288 68288 59.795 23.668 1 17160000 39019 880 26112 26608 45731 45731 0.012764553737270035 LYMAYSDY 8 Unmodified _LYMAYSDY_ 0 0 0 REV__nc|ENSG00000167695|Q8TBR7-1|TLCD3A REV__nc|ENSG00000167695|Q8TBR7-1|TLCD3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2178344726562 2 513.217869 1024.42118 0.61421 0.00031522 -0.29241 -0.00015007 0.3218 0.00016515 513.7193975226676 60.558 0.31116 60.558 60.407 60.718 0 22 13 2 0 0 0 0.80624 1 33838 33838 2.8892 0 1 1031100 + 39020 22243 26113 26609 45732 45732 -0.0900496271940483 LYMDKFEEF 9 Oxidation (M) _LYM(Oxidation (M))DKFEEF_ LYM(1)DKFEEF LYM(52)DKFEEF 0 0 1 ENSG00000086712|ENST00000380122|TXLNG;TXLNG|p.T366I|1|0.22|ENSG00000086712|chrX:16837630-16837630|C/T|missense_variant;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;nc|ENSG00000086712|Q9NUQ3-2|TXLNG ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2756958007812 2 619.275915 1236.53728 0.95937 0.00059411 -1.1137 -0.0006897 -0.15435 -9.5588E-05 619.2756711510285 51.255 0.23838 51.255 51.109 51.348 0 26 10 4 0 0 0 0.036857 1 28260 28260 51.63 32.373 1 7981900 39021 1443 26114 26610 45733 45733 245 -0.07153063939381354 LYMDKFEEF 9 Oxidation (M) _LYM(Oxidation (M))DKFEEF_ LYM(1)DKFEEF LYM(40)DKFEEF 0 0 1 ENSG00000086712|ENST00000380122|TXLNG;TXLNG|p.T366I|1|0.22|ENSG00000086712|chrX:16837630-16837630|C/T|missense_variant;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;nc|ENSG00000086712|Q9NUQ3-2|TXLNG ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2767333984375 2 619.275915 1236.53728 0.76759 0.00047535 -0.19229 -0.00011908 0.57529 0.00035627 619.2760301366097 51.448 0.23466 51.448 51.326 51.561 0 28 10 4 0 0 0 0.069655 1 28380 28380 40.239 13.971 1 8167100 39022 1443 26114 26610 45734 45734 245 -0.07153063939381354 LYMDKFEEF 9 Oxidation (M) _LYM(Oxidation (M))DKFEEF_ 0 0 1 ENSG00000086712|ENST00000380122|TXLNG;TXLNG|p.T366I|1|0.22|ENSG00000086712|chrX:16837630-16837630|C/T|missense_variant;ENST00000445715.5_1_Y:21755293-21766003:+|nuORF;nc|ENSG00000086712|Q9NUQ3-2|TXLNG ENSG00000086712|ENST00000380122|TXLNG ENSG00000086712|ENST00000380122|TXLNG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 619.275915 1236.53728 0.237 0.00014677 -0.58261 -0.00036079 -0.3456 -0.00021402 619.2757504623423 51.815 0.16993 51.382 51.305 51.474 -0.43367 -0.033224 -0.00032898 NaN 40.239 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2074100 39023 1443 26114 26610 245 -0.07153063939381354 LYMDSHELK 9 Unmodified _LYMDSHELK_ 0 0 0 ENST00000310389.5_1_5:175799850-175800087:+|nuORF ENST00000310389.5_1_5:175799850-175800087:+|nuORF ENST00000310389.5_1_5:175799850-175800087:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8096313476562 2 568.276249 1134.53795 0.18829 0.000107 0.70888 0.00040284 0.89717 0.00050984 568.275738628666 39.79 0.19804 39.493 39.371 39.569 -0.29716 14 9 2 0 0 0 0.18118 1 20997 20997 19.257 4.4187 1 1995200 39024 11676 26115 26611 45735 45735 -0.02394224499653319 LYMEDMDP 8 Unmodified _LYMEDMDP_ 0 0 0 REV__OLIG3|p.R23S|1|0.19|ENSG00000177468|chr6:137494102-137494102|C/A|missense_variant REV__OLIG3|p.R23S|1|0.19|ENSG00000177468|chr6:137494102-137494102|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2011413574219 2 507.201361 1012.38817 0.040256 2.0418E-05 -0.28838 -0.00014627 -0.24813 -0.00012585 507.2012065537328 78.974 1.0213 78.488 78.035 79.056 -0.48596 149 42 5 0 0 0 0.80624 1 43439 43439 2.8892 0 1 2950000 + 39025 22985 26116 26612 45736 45736 -0.11752912833765095 LYMEDMDP 8 Unmodified _LYMEDMDP_ 0 0 0 REV__OLIG3|p.R23S|1|0.19|ENSG00000177468|chr6:137494102-137494102|C/A|missense_variant REV__OLIG3|p.R23S|1|0.19|ENSG00000177468|chr6:137494102-137494102|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7720031738281 2 507.201361 1012.38817 0.040256 2.0418E-05 -0.28838 -0.00014627 -0.24813 -0.00012585 507.2012065537328 78.974 1.0213 78.488 78.035 79.056 -0.48596 149 42 5 0 0 0 8.7369 1 43414 43414 2.8892 0 1 2950000 + 39026 22985 26116 26612 45737 45737 -0.11752912833765095 LYMEDSSL 8 Unmodified _LYMEDSSL_ 0 0 0 REV__ENSG00000122121|ENST00000371106|XPNPEP2 REV__ENSG00000122121|ENST00000371106|XPNPEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7196044921875 2 479.215326 956.416099 0.60832 0.00029152 0.27672 0.00013261 0.88504 0.00042413 479.21570032059503 85.468 0.32481 84.967 84.928 85.253 -0.5015 41 28 2 0 0 0 0.77907 1 46765 46765 10.183 3.8293 1 2406700 + 39027 19328 26117 26613 45738 45738 -0.06385266582003624 LYMEDSSL 8 Unmodified _LYMEDSSL_ 0 0 0 REV__ENSG00000122121|ENST00000371106|XPNPEP2 REV__ENSG00000122121|ENST00000371106|XPNPEP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2150573730469 2 479.215326 956.416099 NaN NaN NaN NaN NaN NaN NaN 85.341 1 84.84 84.34 85.34 -0.5015 0 0 0 0.9706 1 46695 46695 6.3541 0 1 + 39028 19328 26117 26613 45739 45739 -0.06385266582003624 LYMFLFLL 8 Unmodified _LYMFLFLL_ 0 0 0 REV__ENSG00000186509|ENST00000335397|OR9Q1 REV__ENSG00000186509|ENST00000335397|OR9Q1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3017578125 2 530.301007 1058.58746 0.092542 4.9075E-05 0.58301 0.00030917 0.67555 0.00035825 530.3017756934256 41.181 0.1879 41.179 41.053 41.241 -0.0017891 14 8 2 0 0 0 0.6895 1 22008 22008 17.087 2.2483 1 1673500 + 39029 23578 26118 26614 45740 45740 0.0605113524711669 LYMGPEYIKYF 11 Unmodified _LYMGPEYIKYF_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.8543090820312 2 712.351957 1422.68936 0.82264 0.00058601 0.21787 0.0001552 1.0405 0.00074121 712.8524678364031 93.9 0.25795 87.724 87.622 87.88 -6.1757 29 14 3 0 0 0 0.10142 2 62139 62139;62244 42.312 24.166 1 9726800 39030 10445 26119 26615 45741;45742 45741 -0.005076631917972918 LYMKNGQGF 9 Oxidation (M) _LYM(Oxidation (M))KNGQGF_ LYM(1)KNGQGF LYM(82)KNGQGF 0 0 1 nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A nc|ENSG00000127314|P61224-4|RAP1B nc|ENSG00000127314|P61224-4|RAP1B MSMS AL20221201_MKP_PDAC_01 4 537.258056640625 2 537.257859 1072.50117 NaN NaN NaN NaN NaN NaN NaN 29.767 1 26.465 25.965 26.965 -3.3016 0 0 0 0.017457 1 16762 16762 81.864 24.393 1 39031 3220 26120 26616 45743 45743 572 -0.03218476325537267 LYMKPRMKI 9 Unmodified _LYMKPRMKI_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3427124023438 2 590.340672 1178.66679 0.61637 0.00036387 2.0096 0.0011863 2.6259 0.0015502 590.3418216764716 56.874 0.21717 56.805 56.678 56.895 -0.068737 16 10 2 0 0 0 0.30202 1 30937 30937 18.135 1.1927 1 1939100 39032 4494 26121 26617 45744 45744 0.08460458929607739 LYMLHTLNI 9 Unmodified _LYMLHTLNI_ 0 0 0 REV__ENSG00000105229|ENST00000262971|PIAS4 REV__ENSG00000105229|ENST00000262971|PIAS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2085876464844 3 373.207327 1116.60015 1.7857 0.00066645 -0.35452 -0.00013231 1.4312 0.00053414 373.20719390052415 53.975 0.39216 48.11 47.947 48.339 -5.8653 49 22 3 0 0 0 0.53666 1 34200 34200 2.9952 2.9952 1 13223000 + 39033 18409 26122 26618 45745 45745 0.04651546639342996 LYMLRDVL 8 Unmodified _LYMLRDVL_ 0 0 0 ENST00000392750.6_2_3:167402023-167402092:-|nuORF ENST00000392750.6_2_3:167402023-167402092:-|nuORF ENST00000392750.6_2_3:167402023-167402092:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7882080078125 2 511.788795 1021.56304 0.87152 0.00044604 -1.3854 -0.00070903 -0.51388 -0.000263 511.7870947683103 90.928 1.9842 84.752 83.702 85.686 -6.1757 356 114 5 0 0 0 0.50586 1 60421 60421 34.187 5.7005 1 120750000 39034 12679 26123 26619 45746 45746 0.0531187509358233 LYMPKLLYF 9 Oxidation (M) _LYM(Oxidation (M))PKLLYF_ LYM(1)PKLLYF LYM(55)PKLLYF 0 0 1 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3268432617188 2 602.327753 1202.64095 0.29294 0.00017645 0.81527 0.00049106 1.1082 0.00066751 602.3282473708795 78.787 0.25786 78.842 78.731 78.988 0.05497 23 9 3 0 0 0 0.031062 1 43511 43511 54.774 26.287 1 16371000 39035 8023 26124 26620 45747 45747 1366 0.04773887958981504 LYMPKLLYF 9 Unmodified _LYMPKLLYF_ 0 0 0 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3313598632812 2 594.330296 1186.64604 1.5763 0.00093681 0.60301 0.00035839 2.1793 0.0012952 594.3306570159983 92.925 0.23064 92.948 92.847 93.078 0.022987 22 9 3 0 0 0 0.070838 1 51678 51678 39.957 19.086 1 3620600 39036 8023 26124 26621 45748 45748 0.06018191821590335 LYMPKLLYF 9 Unmodified _LYMPKLLYF_ 0 0 0 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 nc|ENSG00000170786|Q8N3Y7-2|SDR16C5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8304443359375 2 594.330296 1186.64604 -0.03279 -1.9488E-05 -0.74607 -0.00044341 -0.77886 -0.0004629 594.3287298478435 99.769 0.16582 93.594 93.525 93.691 -6.1757 24 11 3 0 0 0 0.042911 1 66547 66547 48.346 33.508 1 71499000 39037 8023 26124 26621 45749 45749 0.06018191821590335 LYMPTHLRREI 11 Unmodified _LYMPTHLRREI_ 0 0 0 REV__ENSG00000171936|ENST00000641646|OR10H3 REV__ENSG00000171936|ENST00000641646|OR10H3 MSMS AL20221201_MKP_PDAC_01 4 477.2675170898438 3 476.930856 1427.77074 NaN NaN NaN NaN NaN NaN NaN 85.171 1 78.996 78.496 79.496 -6.1757 0 0 0 0.71214 1 56077 56077 16.275 7.0308 1 + 39038 22612 26125 26622 45750 45750 0.07396457290815306 LYMRFHIF 8 Unmodified _LYMRFHIF_ 0 0 0 REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2988891601562 2 563.796955 1125.57936 0.35985 0.00020288 1.6384 0.00092374 1.9983 0.0011266 563.7982064287961 51.843 0.22712 51.409 51.285 51.512 -0.43367 18 11 2 0 0 0 0.28922 1 27961 27961 56.541 20.075 1 4750400 + 39039 29678 26126 26623 45751 45751 0.021590010503359736 LYMRIRDNW 9 Unmodified _LYMRIRDNW_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF;ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8858337402344 3 422.885247 1265.63391 0.39699 0.00016788 0.90428 0.00038241 1.3013 0.00055029 422.88570304227324 48.172 0.29855 48.133 47.988 48.286 -0.038643 52 14 5 0 0 0 0.14 1 25939 25939 40.239 26.624 1 21074000 39040 1848 26127 26624 45752 45752 0.011719681311205932 LYMRIRDNW 9 Unmodified _LYMRIRDNW_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF;ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20221201_MKP_PDAC_01 4 422.8858947753906 3 422.885247 1265.63391 NaN NaN NaN NaN NaN NaN NaN 70.845 1 64.669 64.169 65.169 -6.1757 0 0 0 0.22437 1 46306 46306 27.223 9.3601 1 39041 1848 26127 26624 45753 45753 0.011719681311205932 LYMRIRDNW 9 Unmodified _LYMRIRDNW_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF;ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20221201_MKP_PDAC_01 4 422.8855895996094 3 422.885247 1265.63391 NaN NaN NaN NaN NaN NaN NaN 71.063 1 64.887 64.387 65.387 -6.1757 0 0 0 0.18351 1 46447 46447 37.075 5.0372 1 39042 1848 26127 26624 45754 45754 0.011719681311205932 LYMRIRDNW 9 Unmodified _LYMRIRDNW_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF;ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20221201_MKP_PDAC_01 4 422.8858337402344 3 422.885247 1265.63391 NaN NaN NaN NaN NaN NaN NaN 71.643 1 65.467 64.967 65.967 -6.1757 0 0 0 0.25233 1 46831 46831 26.021 12.502 1 39043 1848 26127 26624 45755 45755 0.011719681311205932 LYMRIRDNW 9 Unmodified _LYMRIRDNW_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF;ENSG00000172296|ENST00000399002|SPTLC3 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MSMS AL20221201_MKP_PDAC_01 4 422.8862915039062 3 422.885247 1265.63391 NaN NaN NaN NaN NaN NaN NaN 71.836 1 65.66 65.16 66.16 -6.1757 0 0 0 0.23566 1 46977 46977 27.088 5.2889 1 39044 1848 26127 26624 45756 45756 0.011719681311205932 LYMVNGPPHF 10 Oxidation (M) _LYM(Oxidation (M))VNGPPHF_ LYM(1)VNGPPHF LYM(78)VNGPPHF 0 0 1 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;ENST00000473499.1_1_3:150264547-150270228:+|nuORF;ENST00000469331.1_1_3:150264589-150280476:+|nuORF;ENST00000463863.5_1_3:150264547-150276361:+|nuORF;ENST00000474505.5_1_3:150264589-150282188:+|nuORF nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7870483398438 2 595.786784 1189.55902 0.52856 0.00031491 0.14898 8.8758E-05 0.67753 0.00040366 595.7870596588706 52.636 0.31384 52.202 52.064 52.378 -0.43367 19 15 2 0 0 0 0.017458 1 28430 28430 77.984 49.497 1 3528600 39045 5657 26128 26625 45757 45757 1032 -0.02818214400144825 LYMVNGPPHF 10 Oxidation (M) _LYM(Oxidation (M))VNGPPHF_ LYM(1)VNGPPHF LYM(89)VNGPPHF 0 0 1 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;ENST00000473499.1_1_3:150264547-150270228:+|nuORF;ENST00000469331.1_1_3:150264589-150280476:+|nuORF;ENST00000463863.5_1_3:150264547-150276361:+|nuORF;ENST00000474505.5_1_3:150264589-150282188:+|nuORF nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.787353515625 2 595.786784 1189.55902 0.49073 0.00029237 -0.69872 -0.00041629 -0.20799 -0.00012392 595.7861949320658 52.316 0.26075 52.257 52.127 52.388 -0.058918 21 12 2 0 0 0 0.0090453 1 28314 28314 89.427 64.753 1 5916400 39046 5657 26128 26625 45758 45758 1032 -0.02818214400144825 LYMVNGPPHF 10 Oxidation (M) _LYM(Oxidation (M))VNGPPHF_ LYM(1)VNGPPHF LYM(110)VNGPPHF 0 0 1 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;ENST00000473499.1_1_3:150264547-150270228:+|nuORF;ENST00000469331.1_1_3:150264589-150280476:+|nuORF;ENST00000463863.5_1_3:150264547-150276361:+|nuORF;ENST00000474505.5_1_3:150264589-150282188:+|nuORF nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MSMS AL20221201_MKP_PDAC_01 4 595.7880249023438 2 595.786784 1189.55902 NaN NaN NaN NaN NaN NaN NaN 58.453 1 52.379 51.879 52.879 -6.0745 0 0 0 0.001013 1 37453 37453 109.63 61.283 1 39047 5657 26128 26625 45759 45759 1032 -0.02818214400144825 LYMVRTML 8 Unmodified _LYMVRTML_ 0 0 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7693481445312 2 513.777373 1025.54019 0.22956 0.00011794 1.4254 0.00073231 1.6549 0.00085026 513.7777466538507 85.048 0.87282 85.048 84.514 85.387 0 114 43 4 0 0 0 0.80624 1 47181 47181 2.8892 0 1 17572000 39048 10896;775 26129 26626 45760 45760 0.028445327044664737 LYNDPFFPLS 10 Unmodified _LYNDPFFPLS_ 0 0 0 ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7996826171875 2 606.800414 1211.58628 0.49739 0.00030182 0.45369 0.0002753 0.95108 0.00057712 606.8005382942199 84.425 0.6302 83.925 83.572 84.202 -0.49961 57 28 3 0 0 0 0.67459 1 46301 46301 5.7319 0 1 1126000 39049 5780 26130 26627 45761 45761 -0.011054075881020253 LYNDRMFRI 9 Unmodified _LYNDRMFRI_ 0 0 0 ENSG00000156467|ENST00000287022|UQCRB;ENST00000518876.1_1_8:97243285-97244208:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB ENSG00000156467|ENST00000287022|UQCRB ENSG00000156467|ENST00000287022|UQCRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8820190429688 3 409.881614 1226.62301 -0.38816 -0.0001591 0.84447 0.00034613 0.45631 0.00018703 409.8816703358982 51.289 0.19965 51.235 51.107 51.306 -0.053871 21 9 3 0 0 0 0.10734 1 27737 27737 23.79 12.99 1 3219900 39050 6455 26131 26628 45762 45762 0.018765657568110328 LYNDRMFRI 9 Unmodified _LYNDRMFRI_ 0 0 0 ENSG00000156467|ENST00000287022|UQCRB;ENST00000518876.1_1_8:97243285-97244208:-|nuORF;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB ENSG00000156467|ENST00000287022|UQCRB ENSG00000156467|ENST00000287022|UQCRB MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.882568359375 3 409.881614 1226.62301 0.91929 0.0003768 -0.1066 -4.3694E-05 0.81269 0.0003331 409.8815940308909 56.487 0.32928 50.51 50.32 50.649 -5.9769 39 18 3 0 0 0 0.028475 1 36029 36029 59.368 41.505 1 30739000 39051 6455 26131 26628 45763 45763 0.018765657568110328 LYNEGDYFR 9 Unmodified _LYNEGDYFR_ 0 0 0 REV__ENSG00000122180|ENST00000241651|MYOG REV__ENSG00000122180|ENST00000241651|MYOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8489074707031 3 392.848856 1175.52474 -0.28791 -0.00011311 -0.18831 -7.3976E-05 -0.47622 -0.00018708 392.84875123349815 31.022 0.85669 31.022 30.503 31.359 0 56 41 3 0 0 0 0.59218 1 15922 15922 0.96228 0.33545 1 4604600 + 39052 19332 26132 26629 45764 45764 -0.056003392873890334 LYNFADLCGR 10 Unmodified _LYNFADLCGR_ 0 0 0 nc|ENSG00000198246|Q9BZD2-2|SLC29A3;ENSG00000198246|ENST00000373189|SLC29A3 nc|ENSG00000198246|Q9BZD2-2|SLC29A3 nc|ENSG00000198246|Q9BZD2-2|SLC29A3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.5564880371094 3 391.190336 1170.54918 0.5022 0.00019646 -0.75105 -0.0002938 -0.24885 -9.7348E-05 391.190279649304 23.897 0.31584 21.07 20.915 21.231 -2.8273 32 18 2 0 0 0 0.23896 1 12957 12957 1.7423 0 1 5329600 39053 10068 26133 26630 45765 45765 -0.029274024055212067 LYNFLQYL 8 Unmodified _LYNFLQYL_ 0 0 0 REV__ENSG00000167363|ENST00000300784|FN3K REV__ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2854614257812 2 537.286943 1072.55933 -0.25195 -0.00013537 3.3164 0.0017818 3.0644 0.0016465 537.2854734879472 61.355 0.44085 60.865 60.654 61.095 -0.48932 37 20 3 0 0 0 0.5953 1 33469 33469 26.341 3.1929 1 3894600 + 39054 22205 26134 26631 45766 45766 0.0259552859138239 LYNGHHHLL 9 Unmodified _LYNGHHHLL_ 0 0 0 ENSG00000121743|ENST00000241125|GJA3 ENSG00000121743|ENST00000241125|GJA3 ENSG00000121743|ENST00000241125|GJA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5295715332031 3 368.52968 1102.56721 0.44225 0.00016298 0.94847 0.00034954 1.3907 0.00051252 368.52973472300073 25.606 0.32526 22.722 22.531 22.856 -2.8831 34 17 3 0 0 0 0.07087 1 14036 14036 39.95 12.321 1 4541400 39055 3596 26135 26632 45767 45767 0.020031006315321065 LYNHVKQLL 9 Unmodified _LYNHVKQLL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5567321777344 3 376.557236 1126.64988 -0.00012372 -4.6587E-08 0.53794 0.00020257 0.53782 0.00020252 376.5573945903296 38.046 0.26875 38.063 37.922 38.191 0.01704 38 12 4 0 0 0 0.05447 1 20192 20192 40.239 16.449 1 10507000 39056 3800 26136 26633 45768 45768 0.09161997639648689 LYNHVKQLL 9 Unmodified _LYNHVKQLL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.332763671875 2 564.332216 1126.64988 0.37774 0.00021317 0.32327 0.00018243 0.70101 0.0003956 564.3323358310638 38.064 0.20825 38.081 37.942 38.151 0.01704 17 9 2 0 0 0 0.070838 1 20212 20212 39.957 39.957 1 2852800 39057 3800 26136 26633 45769 45769 0.09161997639648689 LYNHVKQLL 9 Unmodified _LYNHVKQLL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8921508789062 3 376.557236 1126.64988 1.3532 0.00050957 0.08049 3.0309E-05 1.4337 0.00053988 376.5573929323373 42.926 0.37426 38.241 38.009 38.384 -4.6846 54 23 3 0 0 0 0.022193 2 26096 25953;26096 47.594 29.221 1 27153000 39058 3800 26136 26633 45770;45771 45771 0.09161997639648689 LYNHVKQLL 9 Unmodified _LYNHVKQLL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2710571289062 2 564.332216 1126.64988 1.0206 0.00057597 -0.10613 -5.9891E-05 0.91449 0.00051607 564.3321877419958 42.91 0.27921 38.225 38.089 38.369 -4.6846 29 17 2 0 0 0 0.062767 1 26084 26084 39.957 21.822 1 8548000 39059 3800 26136 26633 45772 45772 0.09161997639648689 LYNHVKQLL 9 Unmodified _LYNHVKQLL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.557236 1126.64988 0.0090284 3.3997E-06 -0.075184 -2.8311E-05 -0.066156 -2.4911E-05 376.5570928809943 38.467 0.14796 38.18 38.114 38.262 -0.28687 0.018448 -0.0003649 NaN 47.594 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1152100 39060 3800 26136 26633 0.09161997639648689 LYNILKEMI 9 Unmodified _LYNILKEMI_ 0 0 0 REV__ENST00000536441.6_2_11:94908753-94910907:-|nuORF REV__ENST00000536441.6_2_11:94908753-94910907:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5513000488281 3 379.550982 1135.63112 0.39164 0.00014865 0.17 6.4525E-05 0.56164 0.00021317 379.5510786744538 49.035 0.26273 48.663 48.558 48.82 -0.37172 37 12 4 0 0 0 0.29507 1 26413 26413 17.443 0 1 20780000 + 39061 28539 26137 26634 45773 45773 0.06872699953578376 LYNILKEMI 9 Unmodified _LYNILKEMI_ 0 0 0 REV__ENST00000536441.6_2_11:94908753-94910907:-|nuORF REV__ENST00000536441.6_2_11:94908753-94910907:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5521240234375 3 379.550982 1135.63112 1.5731 0.00059707 -0.1382 -5.2453E-05 1.4349 0.00054462 379.5510524709946 54.338 0.56852 48.473 48.23 48.799 -5.8653 86 34 3 0 0 0 0.11005 1 34618 34618 32.037 1.334 1 50753000 + 39062 28539 26137 26634 45774 45774 0.06872699953578376 LYNINKLAMT 10 Unmodified _LYNINKLAMT_ 0 0 0 REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF REV__ENST00000475659.1_1_1:197237491-197326220:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5502319335938 3 394.218003 1179.63218 0.53398 0.0002105 -1.5867 -0.00062551 -1.0527 -0.000415 394.21798125490557 64.753 0.45371 64.267 63.949 64.403 -0.48512 51 20 4 0 0 0 0.64628 1 35219 35219 5.0475 1.4605 1 4580600 + 39063 27577 26138 26635 45775 45775 0.049549143224794534 LYNISVPGL 9 Unmodified _LYNISVPGL_ 0 0 0 ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.27978515625 2 488.279118 974.543683 0.48324 0.00023595 1.1846 0.00057841 1.6678 0.00081437 488.2796193600508 72.968 0.27753 72.968 72.799 73.076 0 29 12 3 0 0 0 0.06187 1 40596 40596 42.095 2.1372 1 1008000 39064 4288 26139 26636 45776 45776 0.055392420743373805 LYNKCQDL 8 Unmodified _LYNKCQDL_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;nc|ENSG00000152527|Q8IVE3-3|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MSMS AL20221201_MKP_PDAC_01 4 498.7456665039062 2 498.744585 995.474617 NaN NaN NaN NaN NaN NaN NaN 45.719 1 40.764 40.264 41.264 -4.9549 0 0 0 0.90769 1 28118 28118 18.135 0 1 39065 6195 26140 26637 45777 45777 -0.023301652168925102 LYNKDAVIEF 10 Unmodified _LYNKDAVIEF_ 0 0 0 ENSG00000022277|ENST00000357348|RTF2 ENSG00000022277|ENST00000357348|RTF2 ENSG00000022277|ENST00000357348|RTF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8444213867188 2 606.318971 1210.62339 NaN NaN NaN NaN NaN NaN NaN 57.64 1 57.15 56.65 57.65 -0.48974 0 0 0 0.68942 1 31327 31327 17.113 1.2657 1 39066 532 26141 26638 45778 45778 0.026502639576619913 LYNKGFIYL 9 Unmodified _LYNKGFIYL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000521704.1_1_8:124792721-124796858:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8162841796875 2 565.815867 1129.61718 2.1403 0.001211 0.045981 2.6017E-05 2.1863 0.001237 565.8158490183163 93.647 0.37495 93.67 93.494 93.869 0.022987 37 14 3 0 0 0 0.32235 1 52033 52033 16.942 1.1741 1 6504500 39067 8625 26142 26639 45779 45779 0.05755790516809611 LYNKGFIYL 9 Unmodified _LYNKGFIYL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000521704.1_1_8:124792721-124796858:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 565.815867 1129.61718 0.45233 0.00025593 0.63503 0.00035931 1.0874 0.00061525 565.8157694779461 99.763 0.15562 93.588 93.508 93.664 -6.1757 -0.076956 0.00054598 NaN 16.942 23 10 4 NaN NaN NaN NaN 0 NaN NaN 0 72489000 39068 8625 26142 26639 0.05755790516809611 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8799743652344 3 399.880267 1196.61897 -0.43144 -0.00017252 -0.37328 -0.00014927 -0.80472 -0.00032179 399.88016261107134 35.265 0.35202 35.265 35.09 35.442 0 66 17 5 0 0 0 0.21643 2 18711 18601;18711 26.021 18.544 1 186380000 39069 9152 26143 26640 45780;45781 45781 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.3165283203125 2 599.316763 1196.61897 -0.46819 -0.00028059 -0.046868 -2.8089E-05 -0.51506 -0.00030868 599.3167843028814 35.272 0.2538 35.272 35.146 35.4 0 41 12 4 0 0 0 0.078314 1 18622 18622 38.176 3.2435 1 58770000 39070 9152 26143 26640 45782 45782 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.3168334960938 2 599.316763 1196.61897 NaN NaN NaN NaN NaN NaN NaN 35.425 1 35.425 34.925 35.925 0 0 0 0 0.61214 1 18728 18728 12.241 4.0851 1 39071 9152 26143 26640 45783 45783 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8800048828125 3 399.880267 1196.61897 -0.35908 -0.00014359 -0.11667 -4.6652E-05 -0.47575 -0.00019024 399.88022793235785 35.432 0.37425 35.21 34.979 35.353 -0.2224 59 16 6 0 0 0 0.10247 2 18595 18494;18595 37.075 18.702 1 99181000 39072 9152 26143 26640 45784;45785 45785 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3171997070312 2 599.316763 1196.61897 -0.34983 -0.00020966 -0.089058 -5.3374E-05 -0.43889 -0.00026303 599.3167220881751 35.416 0.28771 35.193 35.045 35.333 -0.2224 37 12 4 0 0 0 0.018061 2 18519 18519;18619 65.474 27.298 1 20360000 39073 9152 26143 26640 45786;45787 45786 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8799133300781 3 399.880267 1196.61897 -0.1855 -7.4176E-05 0.3035 0.00012136 0.11801 4.7189E-05 399.8802870901135 35.195 0.26948 35.223 35.061 35.33 0.027401 31 12 4 0 0 0 0.2324 1 18553 18553 19.626 1.7628 1 16097000 39074 9152 26143 26640 45788 45788 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3162841796875 2 599.316763 1196.61897 -0.14592 -8.7454E-05 -0.32711 -0.00019604 -0.47303 -0.0002835 599.3167845024059 35.169 0.18541 35.196 35.102 35.287 0.027401 20 8 3 0 0 0 0.033587 1 18568 18568 53.404 17.36 1 2072000 39075 9152 26143 26640 45789 45789 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8804016113281 3 399.880267 1196.61897 0.60688 0.00024268 0.29391 0.00011753 0.90079 0.00036021 399.88035511420907 39.728 0.4971 35.277 34.997 35.494 -4.4509 122 31 5 0 0 0 0.032796 3 23496 23496;23631;23771 42.312 17.431 1 589340000 39076 9152 26143 26640 45790;45791;45792 45790 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.31640625 2 599.316763 1196.61897 -0.10548 -6.3216E-05 0.21241 0.0001273 0.10693 6.4083E-05 599.3169602376852 39.7 0.45011 35.249 35.014 35.464 -4.4509 89 28 4 0 0 0 0.0048194 2 23506 23506;23641 117.76 63.928 1 194340000 39077 9152 26143 26640 45793;45794 45793 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8815307617188 3 399.880267 1196.61897 1.5048 0.00060175 0.40655 0.00016257 1.9114 0.00076432 399.88034995705704 41.768 0.64381 37.16 36.91 37.554 -4.6079 53 40 2 0 0 0 0.2324 1 25110 25110 19.626 8.727 1 8858200 39078 9152 26143 26640 45795 45795 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MSMS AL20221201_MKP_PDAC_01 4 399.8816223144531 3 399.880267 1196.61897 NaN NaN NaN NaN NaN NaN NaN 40.323 1 35.794 35.294 36.294 -4.5294 0 0 0 0.18351 1 24067 24067 24.882 5.7376 1 39079 9152 26143 26640 45796 45796 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MSMS AL20221201_MKP_PDAC_01 4 399.8805847167969 3 399.880267 1196.61897 NaN NaN NaN NaN NaN NaN NaN 40.618 1 36.088 35.588 36.588 -4.5294 0 0 0 0.27852 1 24278 24278 19.626 6.0111 1 39080 9152 26143 26640 45797 45797 0.028527995347531032 LYNKIREDF 9 Unmodified _LYNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 399.880267 1196.61897 0.97386 0.00038943 4.4918 0.0017962 5.4656 0.0021856 399.88273982428103 39.439 0.096073 34.989 34.946 35.042 -4.4509 -0.18286 0.005547 NaN 24.882 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 7940900 39081 9152 26143 26640 0.028527995347531032 LYNKITSRL 9 Unmodified _LYNKITSRL_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8889465332031 3 369.888874 1106.64479 0.068719 2.5418E-05 -0.18971 -7.0172E-05 -0.12099 -4.4754E-05 369.8890875383133 33.809 0.51285 33.838 33.672 34.185 0.028934 29 22 2 0 0 0 0.2546 1 17788 17788 23.801 7.2352 1 3780300 39082 8214 26144 26641 45798 45798 0.09573693777042536 LYNKITSRL 9 Unmodified _LYNKITSRL_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8290405273438 2 554.329673 1106.64479 1.0528 0.00058362 -3.511 -0.0019462 -2.4582 -0.0013626 554.8282017096348 38.061 0.22981 33.692 33.565 33.795 -4.3689 19 13 2 0 0 0 0.13231 1 22381 22381 29.841 8.3036 1 16939000 39083 8214 26144 26641 45799 45799 0.09573693777042536 LYNKSNFHF 9 Unmodified _LYNKSNFHF_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5299072265625 3 390.529458 1168.56654 0.23383 9.1316E-05 0.6088 0.00023776 0.84263 0.00032907 390.52968588917514 39.734 0.20567 39.739 39.668 39.873 0.0050545 14 9 2 0 0 0 0.43463 1 21188 21188 7.1017 2.2047 1 1539700 39084 16193 26145 26642 45800 45800 -0.010997388081932513 LYNLLLSPE 9 Unmodified _LYNLLLSPE_ 0 0 0 ENST00000475688.1_1_3:50379695-50380193:-|nuORF;nc|ENSG00000004838|O75800-2|ZMYND10;ENSG00000004838|ENST00000231749|ZMYND10 ENST00000475688.1_1_3:50379695-50380193:-|nuORF ENST00000475688.1_1_3:50379695-50380193:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2977905273438 2 531.297507 1060.58046 0.4246 0.00022559 1.0564 0.00056129 1.481 0.00078687 531.298059544605 86.115 0.34674 85.612 85.444 85.791 -0.50318 31 13 3 0 0 0 0.55144 1 47206 47206 4.3292 0 1 1306000 39085 285 26146 26643 45801 45801 0.05259493900257439 LYNLQLIQEFC 11 Unmodified _LYNLQLIQEFC_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MSMS AL20221201_MKP_PDAC_01 4 461.9063110351562 3 461.904084 1382.69042 NaN NaN NaN NaN NaN NaN NaN 53.519 1 47.715 47.215 48.215 -5.8042 0 0 0 0.85601 1 33836 33836 4.7159 0 1 39086 3357 26147 26644 45802 45802 0.014385511771251913 LYNNIKHAL 9 Unmodified _LYNNIKHAL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5420532226562 3 362.541586 1084.60293 0.51737 0.00018757 0.91101 0.00033028 1.4284 0.00051785 362.54178224778013 30.52 0.23705 30.418 30.311 30.548 -0.10269 22 8 3 0 0 0 0.078314 1 15834 15834 38.176 22.026 1 4625700 39087 1611 26148 26645 45803 45803 0.06401138088517655 LYNNIKHAL 9 Unmodified _LYNNIKHAL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5421447753906 3 362.541586 1084.60293 -0.14519 -5.2639E-05 0.65772 0.00023845 0.51253 0.00018581 362.5417559243107 30.277 0.25261 30.307 30.182 30.434 0.030106 22 10 3 0 0 0 0.1685 1 15851 15851 26.268 18.113 1 1508000 39088 1611 26148 26645 45804 45804 0.06401138088517655 LYNNIKHAL 9 Unmodified _LYNNIKHAL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5423278808594 3 362.541586 1084.60293 1.5478 0.00056113 -0.10572 -3.8327E-05 1.442 0.0005228 362.5416133320851 34.327 0.48271 30.277 30 30.483 -4.0507 61 27 3 0 0 0 0.2324 2 19855 19732;19855 20.415 11.206 1 30152000 39089 1611 26148 26645 45805;45806 45806 0.06401138088517655 LYNNIKHAL 9 Unmodified _LYNNIKHAL_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.2719116210938 2 543.308741 1084.60293 0.74649 0.00040558 0.60051 0.00032626 1.347 0.00073184 543.3093226636933 34.331 0.25858 30.256 30.109 30.367 -4.0754 21 14 2 0 0 0 0.05527 1 19778 19778 50.855 25.456 1 10279000 39090 1611 26148 26645 45807 45807 0.06401138088517655 LYNNIKHALF 10 Unmodified _LYNNIKHALF_ 0 0 0 ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5644226074219 3 411.564391 1231.67134 0.91375 0.00037606 -0.46637 -0.00019194 0.44738 0.00018412 411.5641919199386 47.026 0.15436 46.993 46.898 47.052 -0.033417 15 7 3 0 0 0 0.17253 1 25324 25324 37.075 24.9 1 8016400 39091 1611 26149 26646 45808 45808 0.06477382668367682 LYNNLIQLR 9 Unmodified _LYNNLIQLR_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8389892578125 3 382.892507 1145.65569 NaN NaN NaN NaN NaN NaN NaN 38.255 1 38.272 37.772 38.772 0.01704 0 0 0 0.84564 1 20337 20337 1.0715 0 1 + 39092 17565 26150 26647 45809 45809 0.08869096151329359 LYNNLPIY 8 Unmodified _LYNNLPIY_ 0 0 0 REV__nc|ENSG00000144744|Q8TBC4-2|UBA3 REV__nc|ENSG00000144744|Q8TBC4-2|UBA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2709655761719 2 505.271293 1008.52803 -0.66933 -0.0003382 -0.41401 -0.00020919 -1.0833 -0.00054739 505.7720541383465 33.608 0.3568 33.448 33.196 33.553 -0.15918 34 14 3 0 0 0 0.80143 1 17526 17526 5.7604 0.52976 1 1937800 + 39093 20732 26151 26648 45810 45810 0.024109555572863428 LYNPFLKMCL 10 Carbamidomethyl (C),Oxidation (M) _LYNPFLKM(Oxidation (M))C(Carbamidomethyl (C))L_ LYNPFLKMC(1)L LYNPFLKM(1)CL LYNPFLKMC(50)L LYNPFLKM(50)CL 0 1 1 ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8323364257812 2 657.832877 1313.6512 0.66604 0.00043814 -2.0767 -0.0013661 -1.4107 -0.00092798 657.8308686455385 84.151 0.46322 77.975 77.587 78.05 -6.1757 35 24 2 0 0 0 0.085354 1 55345 55345 49.933 24.534 1 11401000 39094 3112 26152 26649 45811 45811 322 547 0.006921276219145511 LYNPKITSEL 10 Unmodified _LYNPKITSEL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3283081054688 2 589.326796 1176.63904 0.42255 0.00024902 0.60234 0.00035498 1.0249 0.000604 589.3273489297931 49.382 0.2102 49.382 49.277 49.487 0 23 9 3 0 0 0 0.11654 1 27152 27152 43.982 2.0263 1 11417000 39095 1295 26153 26650 45812 45812 0.057785504747243976 LYNPKITSEL 10 Unmodified _LYNPKITSEL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3268432617188 2 589.326796 1176.63904 0.77425 0.00045629 0.20007 0.00011791 0.97432 0.0005742 589.3268853236551 49.769 0.29258 49.377 49.218 49.51 -0.3923 46 14 4 0 0 0 0.035244 1 26724 26724 65.474 27.298 1 26557000 39096 1295 26153 26650 45813 45813 0.057785504747243976 LYNPKITSEL 10 Unmodified _LYNPKITSEL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3267822265625 2 589.326796 1176.63904 0.71732 0.00042274 -0.80523 -0.00047454 -0.087909 -5.1807E-05 589.3260266722144 49.397 0.22108 49.353 49.255 49.476 -0.04369 18 10 2 0 0 0 0.14688 1 26699 26699 40.239 8.9709 1 2054000 39097 1295 26153 26650 45814 45814 0.057785504747243976 LYNPKITSEL 10 Unmodified _LYNPKITSEL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3275756835938 2 589.326796 1176.63904 0.73367 0.00043237 0.29108 0.00017154 1.0248 0.00060392 589.3270938902931 55.718 0.46444 49.797 49.56 50.024 -5.9211 82 27 4 0 0 0 0.010233 2 35555 35427;35555 87.258 29.536 1 104870000 39098 1295 26153 26650 45815;45816 45816 0.057785504747243976 LYNQMMHKF 9 Unmodified _LYNQMMHKF_ 0 0 0 REV__ENSG00000173548|ENST00000308527|SNX33 REV__ENSG00000173548|ENST00000308527|SNX33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.2904663085938 2 606.288637 1210.56272 NaN NaN NaN NaN NaN NaN NaN 101.05 1 101.01 100.51 101.51 -0.04216 0 0 0 0.6032 1 56140 56140 12.532 0.89125 1 + 39099 22735 26154 26651 45817 45817 -0.03413867897916134 LYNQRVEEI 9 Unmodified _LYNQRVEEI_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7840576171875 2 582.306395 1162.59824 0.20298 0.0001182 0.92953 0.00054127 1.1325 0.00065946 582.3066316150316 37.225 0.21631 37.225 37.117 37.333 0 25 10 3 0 0 0 0.19205 1 19823 19823 14.838 0.93222 1 7196500 39100 7679 26155 26652 45818 45818 0.023442091551032718 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ LYNRTM(1)VQL LYNRTM(53)VQL 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3048095703125 2 577.305341 1152.59613 0.060699 3.5042E-05 -0.82557 -0.00047661 -0.76487 -0.00044156 577.3048648498169 39.252 0.20284 38.965 38.836 39.039 -0.28687 30 9 4 0 0 0 0.033587 1 20682 20682 53.404 19.002 1 26859000 39101 9221 26156 26653 45819 45819 1533 0.025934571456446065 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ LYNRTM(1)VQL LYNRTM(51)VQL 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3052978515625 2 577.305341 1152.59613 0.049674 2.8677E-05 0.40116 0.00023159 0.45083 0.00026027 577.3053735922099 39.438 0.38278 39.141 39.029 39.412 -0.29716 48 17 5 0 0 0 0.037253 1 20782 20782 51.415 17.014 1 23925000 39102 9221 26156 26653 45820 45820 1533 0.025934571456446065 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ LYNRTM(1)VQL LYNRTM(59)VQL 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.305419921875 2 577.305341 1152.59613 0.45677 0.00026369 -1.5187 -0.00087673 -1.0619 -0.00061304 577.3048854352867 38.879 0.54072 38.89 38.718 39.259 0.011452 54 25 3 0 0 0 0.024189 1 20669 20669 59.368 17.529 1 13773000 39103 9221 26156 26653 45821 45821 1533 0.025934571456446065 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ LYNRTM(1)VQL LYNRTM(70)VQL 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3030395507812 2 577.305341 1152.59613 NaN NaN NaN NaN NaN NaN NaN 39.023 1 39.034 38.534 39.534 0.011452 0 0 0 0.026638 1 20774 20774 70.332 25.925 1 39104 9221 26156 26653 45822 45822 1533 0.025934571456446065 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ LYNRTM(1)VQL LYNRTM(64)VQL 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.306884765625 2 577.305341 1152.59613 0.59342 0.00034259 -0.42193 -0.00024358 0.1715 9.9005E-05 577.305163910696 44.164 0.97176 39.312 38.946 39.918 -4.852 167 72 4 0 0 0 0.01958 3 26731 26731;26875;27008 63.961 14.028 1 66448000 39105 9221 26156 26653 45823;45824;45825 45823 1533 0.025934571456446065 LYNRTMVQL 9 Oxidation (M) _LYNRTM(Oxidation (M))VQL_ 0 0 1 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 577.305341 1152.59613 0.62059 0.00035827 0.037158 2.1452E-05 0.65775 0.00037972 577.3050959062424 38.977 0.20126 38.977 38.858 39.059 0 0.032848 0.0011747 NaN 59.368 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1275900 39106 9221 26156 26653 1533 0.025934571456446065 LYNSTCDDREF 11 Unmodified _LYNSTCDDREF_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.784423828125 2 681.785167 1361.55578 0.33497 0.00022838 0.10372 7.0716E-05 0.43869 0.00029909 681.785325483232 76.603 0.30544 76.653 76.494 76.8 0.05011 29 12 3 0 0 0 0.68427 1 42282 42282 5.7319 1.4026 1 7264100 39107 3705 26157 26654 45826 45826 -0.11053554035447632 LYNTNHDFKF 10 Unmodified _LYNTNHDFKF_ 0 0 0 nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5431823730469 3 433.543655 1297.60914 0.076248 3.3057E-05 -1.0634 -0.00046102 -0.98713 -0.00042797 433.5431757556858 42.67 0.1492 42.363 42.258 42.408 -0.30682 10 6 2 0 0 0 0.56707 1 22690 22690 12.856 10.603 1 4715300 39108 920 26158 26655 45827 45827 -0.02776388470647362 LYNTNHDFKF 10 Unmodified _LYNTNHDFKF_ 0 0 0 nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5434875488281 3 433.543655 1297.60914 0.42523 0.00018435 -0.73126 -0.00031703 -0.30603 -0.00013268 433.5434842848473 42.384 0.17278 42.375 42.271 42.444 -0.0088196 12 7 3 0 0 0 0.5012 1 22704 22704 16.275 10.872 1 3923400 39109 920 26158 26655 45828 45828 -0.02776388470647362 LYNTNHDFKF 10 Unmodified _LYNTNHDFKF_ 0 0 0 nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 MSMS AL20221201_MKP_PDAC_01 4 433.5433349609375 3 433.543655 1297.60914 NaN NaN NaN NaN NaN NaN NaN 46.993 1 41.913 41.413 42.413 -5.0805 0 0 0 0.16919 1 29117 29117 45.603 33.428 1 39110 920 26158 26655 45829 45829 -0.02776388470647362 LYNVELTLIP 10 Unmodified _LYNVELTLIP_ 0 0 0 REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF REV__ENST00000551834.5_3_12:56547288-56547546:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2046508789062 3 392.228785 1173.66453 -0.051943 -2.0373E-05 0.54394 0.00021335 0.492 0.00019298 392.56336888817935 17.287 0.066267 17.292 17.257 17.323 0.0050564 7 5 2 0 0 0 0.24005 1 8697 8697 0.77653 0 1 1015000 + 39111 28719 26159 26656 45830 45830 0.08464024997147135 LYNVFGRFFL 10 Unmodified _LYNVFGRFFL_ 0 0 0 REV__ENSG00000102471|ENST00000218652|NDFIP2 REV__ENSG00000102471|ENST00000218652|NDFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.9032592773438 3 425.901003 1274.68118 1.4868 0.00063322 3.0978 0.0013194 4.5846 0.0019526 426.23608121059544 40.943 0.30427 36.335 36.18 36.484 -4.6079 24 18 2 0 0 0 0.60623 1 24560 24560 6.1918 3.1196 1 8412600 + 39112 18239 26160 26657 45831 45831 0.054825706737574365 LYNVWCWK 8 Unmodified _LYNVWCWK_ 0 0 0 REV__ENSG00000179397|ENST00000366534|CATSPERE REV__ENSG00000179397|ENST00000366534|CATSPERE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7704467773438 2 556.273312 1110.53207 -0.32853 -0.00018275 -0.61907 -0.00034437 -0.9476 -0.00052712 556.2730225487064 55.539 0.30546 55.539 55.305 55.611 0 18 13 2 0 0 0 8.7369 1 30758 30758 5.2307 0 1 1997700 + 39113 23096 26161 26658 45832 45832 -0.01877278220649714 LYNWEVAIF 9 Unmodified _LYNWEVAIF_ 0 0 0 ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000099804|ENST00000215574|CDC34;ENSG00000107341|ENST00000263228|UBE2R2 ENST00000586788.1_1_19:531880-536341:+|nuORF;ENSG00000107341|ENST00000263228|UBE2R2 ENST00000586788.1_1_19:531880-536341:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7994995117188 2 577.797675 1153.5808 3.5643 0.0020595 -0.50241 -0.00029029 3.0619 0.0017692 577.797343877784 99.623 0.16198 99.587 99.477 99.639 -0.036301 13 5 4 0 0 0 0.022193 1 55332 55332 61.357 39.611 1 4890100 39114 1709;2492 26162 26659 45833 45833 0.010149136200880093 LYPAAIVTI 9 Unmodified _LYPAAIVTI_ 0 0 0 ENST00000237724.9_1_1:220369588-220445709:-|nuORF;ENSG00000118873|ENST00000358951|RAB3GAP2 ENST00000237724.9_1_1:220369588-220445709:-|nuORF ENST00000237724.9_1_1:220369588-220445709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5728149414062 1 960.576445 959.569169 0.45299 0.00043513 -1.4275 -0.0013713 -0.97455 -0.00093613 960.574857457208 82.911 0.2695 82.413 82.263 82.533 -0.49751 20 11 2 0 0 0 0.10925 1 45364 45364 32.117 12.678 1 1418300 39115 3397 26163 26660 45834 45834 0.087767165967648 LYPAAIVTI 9 Unmodified _LYPAAIVTI_ 0 0 0 ENST00000237724.9_1_1:220369588-220445709:-|nuORF;ENSG00000118873|ENST00000358951|RAB3GAP2 ENST00000237724.9_1_1:220369588-220445709:-|nuORF ENST00000237724.9_1_1:220369588-220445709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7923278808594 2 480.791861 959.569169 0.66 0.00031732 -0.093865 -4.513E-05 0.56613 0.00027219 480.79144524921435 82.884 0.29362 82.387 82.263 82.557 -0.49751 19 12 2 0 0 0 0.16776 1 45385 45385 26.341 4.5946 1 571490 39116 3397 26163 26660 45835 45835 0.087767165967648 LYPCIDRHL 9 Carbamidomethyl (C) _LYPC(Carbamidomethyl (C))IDRHL_ LYPC(1)IDRHL LYPC(46)IDRHL 0 1 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.540771484375 3 396.206098 1185.59646 0.70114 0.0002778 0.16026 6.3497E-05 0.8614 0.00034129 396.2062302946269 46.196 0.3653 41.241 41.064 41.429 -4.9549 62 24 3 0 0 0 0.047714 1 28441 28441 45.74 34.94 1 76179000 39117 3862 26164 26661 45836 45836 389 0.01108876865464481 LYPCIDRHL 9 Carbamidomethyl (C) _LYPC(Carbamidomethyl (C))IDRHL_ LYPC(1)IDRHL LYPC(50)IDRHL 0 1 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.3091430664062 2 593.805508 1185.59646 0.25681 0.00015249 1.2112 0.00071921 1.468 0.00087171 593.8061372895736 46.194 0.26556 41.239 41.104 41.369 -4.9549 27 17 2 0 0 0 0.039985 1 28469 28469 49.933 20.851 1 13708000 39118 3862 26164 26661 45837 45837 389 0.01108876865464481 LYPCIDSHL 9 Carbamidomethyl (C) _LYPC(Carbamidomethyl (C))IDSHL_ LYPC(1)IDSHL LYPC(42)IDSHL 0 1 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2684936523438 2 559.270967 1116.52738 0.4998 0.00027952 -1.0474 -0.0005858 -0.54764 -0.00030628 559.2694415454115 52.75 0.15868 52.75 52.678 52.836 0 14 6 3 0 0 0 0.06187 1 29216 29216 42.095 23.96 1 2102600 39119 9480 26165 26662 45838 45838 881 -0.026222071540814795 LYPCIDSHL 9 Carbamidomethyl (C) _LYPC(Carbamidomethyl (C))IDSHL_ LYPC(1)IDSHL LYPC(71)IDSHL 0 1 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2703247070312 2 559.270967 1116.52738 0.58626 0.00032788 -0.12225 -6.8373E-05 0.464 0.0002595 559.270922910211 53.282 0.26084 52.83 52.703 52.963 -0.45173 33 12 4 0 0 0 0.013472 1 28805 28805 70.716 43.832 1 6521700 39120 9480 26165 26662 45839 45839 881 -0.026222071540814795 LYPCIDSHL 9 Carbamidomethyl (C) _LYPC(Carbamidomethyl (C))IDSHL_ LYPC(1)IDSHL LYPC(89)IDSHL 0 1 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.269287109375 2 559.270967 1116.52738 1.216 0.0006801 -0.43579 -0.00024373 0.78025 0.00043637 559.2707841351827 59.316 0.72479 53.241 52.935 53.66 -6.0745 119 39 4 0 0 0 0.0086179 3 37917 37917;38043;38184 89.427 51.101 1 539200000 39121 9480 26165 26662 45840;45841;45842 45840 881 -0.026222071540814795 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.5374755859375 3 385.537953 1153.59203 0.2251 8.6785E-05 -0.047533 -1.8326E-05 0.17757 6.8459E-05 385.537856705492 59.429 0.29526 59.429 59.307 59.602 0 29 12 3 0 0 0 0.20428 1 33118 33118 22.736 10.496 1 3291600 39122 451 26166 26663 45843 45843 0.021377357142227993 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5378723144531 3 385.537953 1153.59203 0.2211 8.5243E-05 -0.14388 -5.5473E-05 0.077216 2.977E-05 385.5378394822512 59.927 0.47439 59.436 59.234 59.708 -0.49079 80 23 5 0 0 0 0.08691 2 32554 32554;32654 36.127 19.014 1 112820000 39123 451 26166 26663 45844;45845 45844 0.021377357142227993 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8026733398438 2 577.803291 1153.59203 0.28436 0.0001643 -0.083197 -4.8071E-05 0.20116 0.00011623 577.8030076517583 59.94 0.38037 59.449 59.272 59.652 -0.49079 44 18 3 0 0 0 0.024882 2 32667 32567;32667 63.563 35.076 1 15388000 39124 451 26166 26663 45846;45847 45847 0.021377357142227993 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.872802734375 3 385.537953 1153.59203 0.22342 8.6138E-05 0.085973 3.3146E-05 0.3094 0.00011928 385.5379562469433 59.581 0.40203 59.528 59.312 59.714 -0.053059 75 20 5 0 0 0 0.08691 3 32388 32388;32392;32502 36.127 13.391 1 97473000 39125 451 26166 26663 45848;45849;45850 45848 0.021377357142227993 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.803466796875 2 577.803291 1153.59203 0.55821 0.00032254 -0.90533 -0.0005231 -0.34712 -0.00020057 577.8026487742376 59.565 0.46082 59.512 59.253 59.714 -0.053062 47 20 3 0 0 0 0.06294 1 32480 32480 46.921 23.772 1 18976000 39126 451 26166 26663 45851 45851 0.021377357142227993 LYPDHFHLL 9 Unmodified _LYPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5386352539062 3 385.537953 1153.59203 1.4736 0.00056812 0.095131 3.6676E-05 1.5687 0.00060479 385.5379326259768 87.653 0.91882 81.478 80.911 81.83 -6.1757 167 50 4 0 0 0 0.05447 5 57739 57488;57611;57739;57864;57986 43.858 26.745 1 285240000 39127 451 26166 26663 45852;45853;45854;45855;45856 45854 0.021377357142227993 LYPDTDWCPR 10 Unmodified _LYPDTDWCPR_ 0 0 0 ENSG00000169733|ENST00000310496|RFNG;ENST00000580953.5_1_17:80006604-80007747:-|nuORF ENSG00000169733|ENST00000310496|RFNG ENSG00000169733|ENST00000310496|RFNG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.28662109375 2 633.284605 1264.55466 NaN NaN NaN NaN NaN NaN NaN 65.89 1 65.406 64.906 65.906 -0.48428 0 0 0 0.99091 1 35970 35970 1.6526 0.17072 1 39128 7908 26167 26664 45857 45857 -0.06703723613736656 LYPEGLAQL 9 Unmodified _LYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2764892578125 2 502.276575 1002.5386 0.13668 6.8654E-05 0.044244 2.2223E-05 0.18093 9.0876E-05 502.2765286461091 70.725 0.83504 70.725 70.402 71.237 0 210 60 4 0 0 0 0.031062 3 39476 39276;39375;39476 54.774 20.671 1 57648000 39129 6670 26168 26665 45858;45859;45860 45860 0.03742938211712499 LYPEGLAQL 9 Unmodified _LYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2767944335938 2 502.276575 1002.5386 0.11895 5.9746E-05 0.38777 0.00019477 0.50672 0.00025451 502.2767083087589 71.199 0.73529 70.722 70.411 71.146 -0.47736 116 31 5 0 0 0 0.016184 3 38952 38844;38952;39053 67.344 33.157 1 78430000 39130 6670 26168 26665 45861;45862;45863 45862 0.03742938211712499 LYPEGLAQL 9 Unmodified _LYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2764892578125 2 502.276575 1002.5386 0.99154 0.00049803 -0.28913 -0.00014522 0.70241 0.0003528 502.2764697798205 70.69 0.51608 70.725 70.483 70.999 0.035507 55 23 3 0 0 0 0.016184 2 38969 38862;38969 67.344 31.3 1 6026700 39131 6670 26168 26665 45864;45865 45865 0.03742938211712499 LYPEGLAQL 9 Unmodified _LYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2774353027344 2 502.276575 1002.5386 0.41878 0.00021034 0.77592 0.00038973 1.1947 0.00060007 502.27675394901047 78.441 1.3019 72.265 71.684 72.986 -6.1757 268 76 5 0 0 0 0.012148 6 51641 51137;51256;51380;51509;51641;51776 74.423 36.272 1 309600000 39132 6670 26168 26665 45866;45867;45868;45869;45870;45871 45870 0.03742938211712499 LYPEIFEKF 9 Unmodified _LYPEIFEKF_ 0 0 0 ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF ENSG00000119778|ENST00000238789|ATAD2B ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3118286132812 2 593.313158 1184.61176 -0.53266 -0.00031604 1.6845 0.00099943 1.1518 0.0006834 593.3136869268338 78.144 0.26984 77.662 77.575 77.844 -0.4826 25 11 3 0 0 0 0.19349 1 42788 42788 31.268 15.421 1 2053800 39133 3469 26169 26666 45872 45872 0.026840669343073387 LYPEIFEKF 9 Unmodified _LYPEIFEKF_ 0 0 0 ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF ENSG00000119778|ENST00000238789|ATAD2B ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3148193359375 2 593.313158 1184.61176 0.023553 1.3974E-05 0.79337 0.00047072 0.81692 0.00048469 593.3139262118791 77.636 0.26275 77.686 77.486 77.748 0.05011 23 10 3 0 0 0 0.060956 1 42839 42839 53.833 33.379 1 2954500 39134 3469 26169 26666 45873 45873 0.026840669343073387 LYPEIFEKF 9 Unmodified _LYPEIFEKF_ 0 0 0 ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF ENSG00000119778|ENST00000238789|ATAD2B ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.31396484375 2 593.313158 1184.61176 0.57764 0.00034272 -0.17005 -0.00010089 0.40759 0.00024183 593.3128864938843 92.464 0.38502 86.289 86.115 86.5 -6.1757 35 22 2 0 0 0 0.014182 3 61125 61117;61125;61246 72.968 42.436 1 20114000 39135 3469 26169 26666 45874;45875;45876 45875 0.026840669343073387 LYPELPPAPL 10 Unmodified _LYPELPPAPL_ 0 0 0 REV__ENST00000463846.5_1_1:44461423-44461829:+|nuORF REV__ENST00000463846.5_1_1:44461423-44461829:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7901000976562 2 555.3157 1108.61685 0.70105 0.00038931 0.73636 0.00040891 1.4374 0.00079822 555.3159298382153 86.13 0.37892 85.627 85.366 85.745 -0.50318 28 14 3 0 0 0 0.23117 1 47029 47029 11.64 2.2929 1 707490 + 39136 21468 26170 26667 45877 45877 0.06688370796928211 LYPENIVPSF 10 Unmodified _LYPENIVPSF_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8093872070312 2 589.808239 1177.60193 0.50329 0.00029685 1.7617 0.0010391 2.265 0.0013359 589.8094535033247 83.494 0.52724 82.996 82.741 83.268 -0.49751 51 21 3 0 0 0 0.1942 1 45717 45717 34.402 21.359 1 1906000 39137 4676 26171 26668 45878 45878 0.020228789289376436 LYPENIVPSF 10 Unmodified _LYPENIVPSF_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8097534179688 2 589.808239 1177.60193 0.86018 0.00050734 1.5098 0.00089046 2.3699 0.0013978 590.3104347703738 91.004 0.97501 84.828 84.46 85.435 -6.1757 169 56 4 0 0 0 0.085354 1 60468 60468 49.933 0 1 44720000 39138 4676 26171 26668 45879 45879 0.020228789289376436 LYPESIYRQP 10 Unmodified _LYPESIYRQP_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.5551147460938 3 422.555672 1264.64519 NaN NaN NaN NaN NaN NaN NaN 19.019 1 19.042 18.542 19.542 0.023106 0 0 0 0.99388 1 9571 9571 0.56317 0 1 + 39139 24003 26172 26669 45880 45880 0.02345068706222264 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.3057861328125 2 586.305332 1170.59611 -0.08766 -5.1396E-05 1.2208 0.00071577 1.1332 0.00066438 586.3062384651685 70.346 0.3147 70.346 70.203 70.518 0 32 12 3 0 0 0 0.11784 1 39178 39178 31.268 16.43 1 1203700 39140 6480 26173 26670 45881 45881 0.01763780417286398 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.80712890625 2 586.305332 1170.59611 0.29027 0.00017019 0.17823 0.0001045 0.4685 0.00027469 586.3054625044979 70.798 0.6721 70.321 70.119 70.791 -0.47735 88 32 4 0 0 0 0.078314 2 38654 38654;38764 38.176 17.722 1 19985000 39141 6480 26173 26670 45882;45883 45882 0.01763780417286398 LYPEVFEKF 9 Unmodified _LYPEVFEKF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3048706054688 2 586.305332 1170.59611 0.90193 0.00052881 -0.0059858 -3.5095E-06 0.89594 0.0005253 586.3052255064523 81.186 1.1812 75.01 74.369 75.55 -6.1757 153 66 3 0 0 0 0.017075 6 53159 52913;53037;53159;53290;53423;53589 66.457 34.151 1 38271000 39142 6480 26173 26670 45884;45885;45886;45887;45888;45889 45886 0.01763780417286398 LYPFPLALF 9 Unmodified _LYPFPLALF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8096313476562 2 540.810054 1079.60555 -0.60281 -0.00032601 0.1771 9.5777E-05 -0.42571 -0.00023023 540.8100244306827 102.34 0.14354 102.3 102.23 102.37 -0.045853 11 4 4 0 0 0 0.028712 1 56869 56869 56.048 27.875 1 25290000 39143 7493 26174 26671 45890 45890 0.06893593493441585 LYPFPLALF 9 Unmodified _LYPFPLALF_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8109130859375 2 540.810054 1079.60555 1.061 0.00057379 -0.084962 -4.5949E-05 0.97601 0.00052784 540.8098516738889 102.61 0.114 96.434 96.373 96.487 -6.1757 87 21 5 0 0 0 0.028712 1 68832 68832 56.048 10.298 1 301500000 39144 7493 26174 26671 45891 45891 0.06893593493441585 LYPFQIHSI 9 Unmodified _LYPFQIHSI_ 0 0 0 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3059692382812 2 559.305667 1116.59678 0.30049 0.00016807 -0.15757 -8.813E-05 0.14292 7.9936E-05 559.3059050390419 69.211 0.25974 68.73 68.528 68.788 -0.48071 18 10 2 0 0 0 0.14 1 37819 37819 29.082 7.3349 1 1197900 39145 7031 26175 26672 45892 45892 0.04314619856995705 LYPFQIHSI 9 Unmodified _LYPFQIHSI_ 0 0 0 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8086547851562 2 559.305667 1116.59678 0.95328 0.00053318 -0.57938 -0.00032405 0.37391 0.00020913 559.3053564822324 68.626 0.70651 68.651 68.318 69.024 0.025154 89 33 4 0 0 0 0.010818 2 37638 37638;37738 78.149 52.75 1 31331000 39146 7031 26175 26672 45893;45894 45893 0.04314619856995705 LYPGHRYSE 9 Unmodified _LYPGHRYSE_ 0 0 0 REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF REV__ENST00000541683.1_1_11:61582434-61582803:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.2208557128906 3 374.517329 1120.53016 0.015643 5.8584E-06 0.20208 7.5683E-05 0.21772 8.1542E-05 374.5174803787083 37.699 0.15907 37.699 37.604 37.764 0 10 7 2 0 0 0 0.21874 1 20035 20035 1.1933 0 1 1093600 + 39147 28602 26176 26673 45895 45895 -0.02528615704909498 LYPGSVYLL 9 Unmodified _LYPGSVYLL_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7891235351562 2 512.789318 1023.56408 0.38488 0.00019736 -0.17776 -9.1152E-05 0.20712 0.00010621 512.7891866469437 93.51 0.78368 87.335 87.004 87.788 -6.1757 91 52 2 0 0 0 0.18465 1 61935 61935 24.674 0 1 33085000 39148 16507 26177 26674 45896 45896 0.05324412734148609 LYPHIDKQYL 10 Unmodified _LYPHIDKQYL_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.5679626464844 3 430.567801 1288.68157 0.57421 0.00024724 0.81679 0.00035168 1.391 0.00059892 430.5677845358626 46.651 0.27316 46.314 46.169 46.442 -0.33664 29 13 3 0 0 0 0.32072 1 24972 24972 17.863 12.08 1 11866000 39149 10912 26178 26675 45897 45897 0.04877945602947875 LYPHIDKQYL 10 Unmodified _LYPHIDKQYL_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8879089355469 3 430.567801 1288.68157 1.0697 0.00046057 0.1033 4.4478E-05 1.173 0.00050505 430.56758189860733 46.395 0.24803 46.362 46.224 46.472 -0.033421 25 11 4 0 0 0 0.23707 1 24997 24997 7.4771 5.5707 1 2416500 39150 10912 26178 26675 45898 45898 0.04877945602947875 LYPHIDKQYL 10 Unmodified _LYPHIDKQYL_ 0 0 0 nc|ENSG00000275835|Q96RT8-2|TUBGCP5;ENSG00000275835|ENST00000615383|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 430.567801 1288.68157 0.48741 0.00020986 -0.001071 -4.6112E-07 0.48634 0.0002094 430.90219411487925 51.921 0.1821 46.186 46.107 46.289 -5.7345 -0.10121 -0.00042639 NaN 7.4771 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 38126000 39151 10912 26178 26675 0.04877945602947875 LYPHIRTTL 9 Unmodified _LYPHIRTTL_ 0 0 0 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 ENSG00000139044|ENST00000266383|B4GALNT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.886474609375 3 371.885353 1112.63423 NaN NaN NaN NaN NaN NaN NaN 42.16 1 42.151 41.651 42.651 -0.0088196 0 0 0 0.20976 1 22564 22564 22.775 7.8178 1 39152 5121 26179 26676 45899 45899 0.08241711122627748 LYPHLSTYW 9 Unmodified _LYPHLSTYW_ 0 0 0 ENSG00000162227|ENST00000294168|TAF6L ENSG00000162227|ENST00000294168|TAF6L ENSG00000162227|ENST00000294168|TAF6L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.295654296875 2 590.295299 1178.57605 1.0085 0.00059531 1.742 0.0010283 2.7505 0.0016236 590.2963813823322 66.165 0.5479 66.175 65.993 66.54 0.0095596 73 27 3 0 0 0 0.0094915 1 36289 36289 81.864 21.79 1 13445000 39153 6841 26180 26677 45900 45900 -0.00609970522691583 LYPKARLAF 9 Unmodified _LYPKARLAF_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2191467285156 3 360.218443 1077.6335 1.5776 0.00056827 1.0441 0.00037612 2.6217 0.00094439 360.55364120237937 49.749 0.37378 44.21 44.109 44.483 -5.5391 58 23 4 0 0 0 0.18144 1 31093 31093 24.991 9.1438 1 23879000 39154 2068 26181 26678 45901 45901 0.0977891647355591 LYPKTLFLL 9 Unmodified _LYPKTLFLL_ 0 0 0 nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.345458984375 2 554.344261 1106.67397 0.88038 0.00048803 0.72688 0.00040294 1.6073 0.00089097 554.34461079874 99.519 0.23076 93.343 93.243 93.474 -6.1757 48 14 4 0 0 0 0.098164 1 66264 66264 36.127 2.0246 1 384860000 39155 5112 26182 26679 45902 45902 0.12489838073338433 LYPLHQAYL 9 Unmodified _LYPLHQAYL_ 0 0 0 ENST00000237841.5_1_12:3949907-3950609:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4 ENST00000237841.5_1_12:3949907-3950609:+|nuORF ENST00000237841.5_1_12:3949907-3950609:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.30615234375 2 559.305667 1116.59678 0.59687 0.00033383 0.1482 8.2888E-05 0.74507 0.00041672 559.3057517269702 55.359 0.2931 54.881 54.712 55.005 -0.47798 40 13 5 0 0 0 0.06187 1 30006 30006 42.095 6.0504 1 6238300 39156 7152 26183 26680 45903 45903 0.04314619856995705 LYPLHQAYL 9 Unmodified _LYPLHQAYL_ 0 0 0 ENST00000237841.5_1_12:3949907-3950609:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4 ENST00000237841.5_1_12:3949907-3950609:+|nuORF ENST00000237841.5_1_12:3949907-3950609:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8077392578125 2 559.305667 1116.59678 0.65168 0.00036449 0.72176 0.00040368 1.3734 0.00076817 559.3061364307368 55.007 0.25389 54.938 54.823 55.076 -0.068741 33 12 3 0 0 0 0.2001 1 29870 29870 23.148 0 1 7651000 39157 7152 26183 26680 45904 45904 0.04314619856995705 LYPLPLLEP 9 Unmodified _LYPLPLLEP_ 0 0 0 REV__ENST00000456101.6_1_6:109768322-109768406:-|nuORF REV__ENST00000456101.6_1_6:109768322-109768406:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2112121582031 3 352.210954 1053.61103 NaN NaN NaN NaN NaN NaN NaN 13.11 1 13.12 12.62 13.62 0.0096512 0 0 0 0.85798 1 6462 6462 0.23584 0 1 + 39158 27249 26184 26681 45905 45905 0.08637272285272957 LYPLTNYTF 9 Unmodified _LYPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.291259765625 2 566.289682 1130.56481 1.3986 0.000792 0.70895 0.00040147 2.1075 0.0011935 566.2900001969412 81.225 0.99336 81.285 80.866 81.86 0.059929 135 38 5 0 0 0 0.047788 2 44959 44857;44959 60.39 8.1212 1 132710000 39159 7563 26185 26682 45906;45907 45907 0.00475207383169618 LYPLTNYTF 9 Unmodified _LYPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2625732421875 2 566.289682 1130.56481 0.47216 0.00026738 0.50144 0.00028396 0.9736 0.00055134 566.2898767525043 75.406 0.30079 75.452 75.346 75.647 0.045959 20 13 2 0 0 0 0.18941 1 41547 41547 14.582 2.0501 1 1584100 39160 7563 26185 26682 45908 45908 0.00475207383169618 LYPLTNYTF 9 Unmodified _LYPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2899780273438 2 566.289682 1130.56481 1.3302 0.0007533 -0.03967 -2.2465E-05 1.2906 0.00073083 566.2893987481971 89.41 1.0659 83.234 82.727 83.793 -6.1757 185 59 4 0 0 0 0.044296 5 59018 58775;58895;59018;59142;59262 61.357 17.499 1 535520000 39161 7563 26185 26682 45909;45910;45911;45912;45913 45911 0.00475207383169618 LYPLTNYTF 9 Unmodified _LYPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1131.573974609375 1 1131.57209 1130.56481 1.0514 0.0011897 -0.61869 -0.0007001 0.43271 0.00048964 1131.571429414267 89.389 0.80511 83.213 82.846 83.651 -6.1757 104 44 3 0 0 0 0.0033237 1 59267 59267 149.91 71.186 1 62135000 39162 7563 26185 26682 45914 45914 0.00475207383169618 LYPNEIYRQ 9 Unmodified _LYPNEIYRQ_ 0 0 0 REV__ENSG00000131044|ENST00000535842|TTLL9 REV__ENSG00000131044|ENST00000535842|TTLL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8103637695312 2 598.308938 1194.60332 0.52326 0.00031307 0.096758 5.7891E-05 0.62002 0.00037096 598.3089494826809 71.683 0.54495 71.722 71.49 72.035 0.039024 92 25 5 0 0 0 0.07916 1 39533 39533 37.974 18.717 1 16171000 + 39163 19766 26186 26683 45915 45915 0.013805130177161118 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.8910827636719 3 444.890944 1331.651 0.18783 8.3565E-05 0.796 0.00035413 0.98383 0.0004377 444.8910051808926 43.415 0.60214 43.415 43.121 43.723 0 76 29 4 0 0 0 0.13335 2 23518 23518;23629 31.462 25.678 1 55900000 39164 3121 26187 26684 45916;45917 45916 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.8331298828125 2 666.832777 1331.651 -0.17421 -0.00011617 0.092524 6.1698E-05 -0.081687 -5.4471E-05 666.8329802854396 43.424 0.28354 43.424 43.262 43.545 0 31 13 3 0 0 0 0.01584 1 23572 23572 61.602 44.489 1 6540700 39165 3121 26187 26684 45918 45918 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.8910522460938 3 444.890944 1331.651 0.05653 2.515E-05 -0.54719 -0.00024344 -0.49066 -0.00021829 444.8907045855887 43.64 0.363 43.329 43.144 43.507 -0.31039 47 16 4 0 0 0 0.24216 1 23178 23178 35.08 28.043 1 92673000 39166 3121 26187 26684 45919 45919 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8319702148438 2 666.832777 1331.651 NaN NaN NaN NaN NaN NaN NaN 43.697 1 43.387 42.887 43.887 -0.31039 0 0 0 5.6777E-07 1 23258 23258 93.166 56.66 1 39167 3121 26187 26684 45920 45920 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.891357421875 3 444.890944 1331.651 0.80928 0.00036004 0.52947 0.00023556 1.3387 0.0005956 444.89072355046676 43.228 0.3164 43.212 43.083 43.399 -0.015667 35 14 3 0 0 0 0.4178 1 23192 23192 12.929 4.1833 1 13204000 39168 3121 26187 26684 45921 45921 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.2257995605469 3 444.890944 1331.651 0.82328 0.00036627 -0.0063419 -2.8214E-06 0.81694 0.00036345 444.89094789761225 48.917 0.50418 43.521 43.24 43.745 -5.3961 94 31 4 0 0 0 0.0079227 3 30664 30393;30517;30664 57.204 39.341 1 294080000 39169 3121 26187 26684 45922;45923;45924 45924 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3353271484375 2 666.832777 1331.651 0.38065 0.00025383 -0.5047 -0.00033655 -0.12405 -8.2723E-05 666.8323588713738 48.914 0.44551 43.518 43.258 43.704 -5.3961 67 27 3 0 0 0 2.8439E-06 2 30396 30396;30519 100.09 67.095 1 110110000 39170 3121 26187 26684 45925;45926 45925 -0.0015583278209305718 LYPNIDKDHAF 11 Unmodified _LYPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MSMS AL20221201_MKP_PDAC_01 4 666.8336181640625 2 666.832777 1331.651 NaN NaN NaN NaN NaN NaN NaN 49.157 1 43.761 43.261 44.261 -5.3961 0 0 0 0.13061 1 30690 30690 45.74 12.954 1 39171 3121 26187 26684 45927 45927 -0.0015583278209305718 LYPNQKPLL 9 Unmodified _LYPNQKPLL_ 0 0 0 L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|16|1|sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|16|1|sense L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|16|1|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3218383789062 2 543.321317 1084.62808 1.2233 0.00066462 0.01412 7.6719E-06 1.2374 0.00067229 543.3208269801754 96.545 0.37206 90.369 90.185 90.557 -6.1757 48 21 3 0 0 0 0.095405 1 64036 64036 34.102 2.8341 1 32185000 39172 15953 26188 26685 45928 45928 0.08915192891095103 LYPNTRLLL 9 Unmodified _LYPNTRLLL_ 0 0 0 L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|27|3|sense L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|27|3|sense L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|27|3|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2271118164062 3 368.225486 1101.65463 1.6136 0.00059418 -0.78048 -0.00028739 0.83314 0.00030678 368.2255545995857 80.051 0.3447 73.876 73.659 74.004 -6.1757 52 20 4 0 0 0 0.2289 1 52414 52414 20.581 2.7178 1 19123000 39173 15945 26189 26686 45929 45929 0.10786881782428281 LYPPEELIY 9 Unmodified _LYPPEELIY_ 0 0 0 nc|ENSG997|Q9N2J8|HERV-H-ENH3;nc|ENSG998|Q9N2K0|HERV-H-ENH1 nc|ENSG997|Q9N2J8|HERV-H-ENH3 nc|ENSG997|Q9N2J8|HERV-H-ENH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.534423828125 3 379.533986 1135.58013 0.63724 0.00024185 0.66127 0.00025098 1.2985 0.00049283 379.53429037436064 62.587 0.22488 62.099 61.936 62.161 -0.48764 17 10 2 0 0 0 0.55144 1 34091 34091 4.897 0 1 1830200 39174 16659 26190 26687 45930 45930 0.017760741804067948 LYPPEELIY 9 Unmodified _LYPPEELIY_ 0 0 0 nc|ENSG997|Q9N2J8|HERV-H-ENH3;nc|ENSG998|Q9N2K0|HERV-H-ENH1 nc|ENSG997|Q9N2J8|HERV-H-ENH3 nc|ENSG997|Q9N2J8|HERV-H-ENH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7982177734375 2 568.79734 1135.58013 0.40634 0.00023113 -4.0443 -0.0023004 -3.638 -0.0020693 568.7957040620224 59.407 0.64101 59.354 59.093 59.734 -0.053062 88 32 5 0 0 0 0.06187 2 32469 32469;32583 42.095 18.946 1 107050000 39175 16659 26190 26687 45931;45932 45931 0.017760741804067948 LYPQFMFHL 9 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ LYPQFM(1)FHL LYPQFM(60)FHL 0 0 1 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.2980346679688 2 606.299527 1210.5845 0.86329 0.00052341 -0.34176 -0.00020721 0.52153 0.0003162 606.299388948467 80.894 0.97984 80.952 80.628 81.608 0.057709 142 37 6 0 0 0 0.023761 4 44608 44608;44716;44814;44929 59.795 38.049 1 193820000 39176 1943;1893 26191 26688 45933;45934;45935;45936 45933 315 -0.012367398777087146 LYPQFMFHL 9 Oxidation (M) _LYPQFM(Oxidation (M))FHL_ LYPQFM(1)FHL LYPQFM(57)FHL 0 0 1 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.300537109375 2 606.299527 1210.5845 0.81845 0.00049623 -0.20145 -0.00012214 0.617 0.00037408 606.2994953359613 95.304 0.79742 89.128 88.711 89.508 -6.1757 169 45 5 0 0 0 0.027803 3 62912 62912;63030;63153 56.541 33.822 1 474310000 39177 1943;1893 26191 26688 45937;45938;45939 45937 315 -0.012367398777087146 LYPQFMFHL 9 Unmodified _LYPQFMFHL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.303466796875 2 598.30207 1194.58959 0.22889 0.00013694 -0.32144 -0.00019232 -0.09255 -5.5373E-05 598.3017768893013 89.662 0.40937 89.704 89.476 89.886 0.042175 41 14 4 0 0 0 0.040472 2 49835 49835;49941 49.669 21.182 1 50065000 39178 1943;1893 26191 26689 45940;45941 45940 7.563984922853706E-05 LYPQFMFHL 9 Unmodified _LYPQFMFHL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.30224609375 2 598.30207 1194.58959 0.31003 0.00018549 -0.016441 -9.8366E-06 0.29359 0.00017566 598.3020585466379 99.187 0.20415 93.012 92.908 93.113 -6.1757 47 11 6 0 0 0 0.040472 1 65940 65940 49.669 21.182 1 2021099999.9999998 39179 1943;1893 26191 26689 45942 45942 7.563984922853706E-05 LYPQTGPP 8 Unmodified _LYPQTGPP_ 0 0 0 nc|ENSG00000100968|Q14934-24|NFATC4;nc|ENSG00000100968|Q14934-23|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;nc|ENSG00000100968|Q14934-19|NFATC4;nc|ENSG00000100968|Q14934-20|NFATC4;nc|ENSG00000100968|Q14934-21|NFATC4;nc|ENSG00000100968|Q14934-22|NFATC4;nc|ENSG00000100968|Q14934-2|NFATC4 nc|ENSG00000100968|Q14934-24|NFATC4 nc|ENSG00000100968|Q14934-24|NFATC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 872.4517822265625 1 872.451245 871.443968 -0.1249 -0.00010897 1.1897 0.001038 1.0649 0.00092903 872.452387180317 71.192 0.29567 70.715 70.589 70.884 -0.47735 16 12 2 0 0 0 0.57045 1 38937 38937 28.487 3.813 1 857020 39180 1895 26192 26690 45943 45943 0.00310424460383274 LYPRDLWNF 9 Unmodified _LYPRDLWNF_ 0 0 0 ENST00000565833.1_1_17:62965520-62968715:-|nuORF;ENST00000430983.5_1_17:62964482-62968772:-|nuORF ENST00000565833.1_1_17:62965520-62968715:-|nuORF ENST00000565833.1_1_17:62965520-62968715:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3139038085938 2 612.314023 1222.61349 1.1962 0.00073243 0.85191 0.00052164 2.0481 0.0012541 612.3144356658288 95.407 0.91081 89.231 88.837 89.748 -6.1757 87 53 2 0 0 0 0.02676 4 63213 63005;63096;63213;63355 61.602 23.628 1 15911000 39181 13253 26193 26691 45944;45945;45946;45947 45946 0.011091207429444694 LYPRDSWNF 9 Unmodified _LYPRDSWNF_ 0 0 0 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.287109375 2 599.288005 1196.56146 0.61156 0.0003665 -1.1397 -0.00068298 -0.52809 -0.00031648 599.2870008308998 58.086 0.55524 58.02 57.871 58.427 -0.066036 53 27 3 0 0 0 0.062454 2 31690 31589;31690 41.956 3.9816 1 4387900 39182 9864 26194 26692 45948;45949 45949 -0.02896042670818133 LYPRDSWNF 9 Unmodified _LYPRDSWNF_ 0 0 0 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2890014648438 2 599.288005 1196.56146 0.81765 0.00049001 -1.143 -0.00068498 -0.32535 -0.00019498 599.2872490115258 64.092 0.55179 57.917 57.652 58.204 -6.1757 71 29 3 0 0 0 0.013609 2 41414 41414;41550 70.332 24.311 1 25176000 39183 9864 26194 26692 45950;45951 45950 -0.02896042670818133 LYPRDSWNF 9 Unmodified _LYPRDSWNF_ 0 0 0 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2;ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.287109375 2 599.288005 1196.56146 0.49947 0.00029933 -2.0286 -0.0012157 -1.5291 -0.0009164 599.2879369547716 64.731 0.90312 58.555 58.186 59.089 -6.1757 80 50 2 0 0 0 0.047788 1 41785 41785 45.7 1.8413 1 155630000 39184 9864 26194 26692 45952 45952 -0.02896042670818133 LYPRGCSLLMP 11 Unmodified _LYPRGCSLLMP_ 0 0 0 ENST00000565973.5_1_15:89645756-89645801:+|nuORF ENST00000565973.5_1_15:89645756-89645801:+|nuORF ENST00000565973.5_1_15:89645756-89645801:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.220703125 3 417.219238 1248.63589 0.14813 6.1802E-05 4.035 0.0016835 4.1831 0.0017453 417.2207696715265 27.407 0.16156 27.435 27.351 27.513 0.028664 11 6 2 0 0 0 0.66428 1 14246 14246 6.2344 0.83165 1 4881500 39185 15413 26195 26693 45953 45953 0.02151260824689416 LYPRLKVLAF 10 Unmodified _LYPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5916442871094 3 407.256898 1218.74886 0.44193 0.00017998 0.5879 0.00023943 1.0298 0.00041941 407.2571122107419 66.943 0.27126 66.961 66.793 67.064 0.018028 36 12 4 0 0 0 0.31022 1 36709 36709 22.658 13.114 1 8061500 39186 3468 26196 26694 45954 45954 0.148240206045557 LYPRLKVLAF 10 Unmodified _LYPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2577209472656 3 407.256898 1218.74886 1.2143 0.00049453 0.53724 0.00021879 1.7515 0.00071333 407.2570939287725 95.129 0.5198 88.954 88.711 89.23 -6.1757 52 28 2 0 0 0 0.42068 2 62933 62933;63050 17.443 7.8987 1 23441000 39187 3468 26196 26694 45955;45956 45955 0.148240206045557 LYPRLKVLAF 10 Unmodified _LYPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3836059570312 2 610.381709 1218.74886 0.99599 0.00060794 0.4071 0.00024849 1.4031 0.00085643 610.3820227112624 95.176 0.35835 89.001 88.803 89.162 -6.1757 29 19 2 0 0 0 0.041224 1 62971 62971 62.573 31.936 1 6077800 39188 3468 26196 26694 45957 45957 0.148240206045557 LYPRLYPEL 9 Unmodified _LYPRLYPEL_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000522843.5_1_8:59477592-59488665:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3274536132812 2 582.326599 1162.63865 1.272 0.00074074 -2.224 -0.0012951 -0.95195 -0.00055435 582.3266377571762 66.719 0.53207 66.729 66.561 67.093 0.0095596 49 25 3 0 0 0 0.017075 1 36617 36617 66.457 30.33 1 5163000 39189 4949 26197 26695 45958 45958 0.06383175545511222 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2976684570312 2 555.297507 1108.58046 0.68323 0.00037939 -0.027542 -1.5294E-05 0.65568 0.0003641 555.2974705881578 87.709 0.49982 87.205 86.9 87.4 -0.50423 77 22 4 0 0 0 0.042911 2 48028 47927;48028 48.346 18.121 1 14166000 39190 1995 26198 26696 45959;45960 45960 0.030514939002614483 LYPSIIQEF 9 Unmodified _LYPSIIQEF_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1 ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2978515625 2 555.297507 1108.58046 1.4667 0.00081448 0.22286 0.00012375 1.6896 0.00093823 555.2976801082671 97.526 0.85765 91.35 90.96 91.817 -6.1757 118 51 3 0 0 0 0.031062 3 64412 64412;64650;64777 54.774 27.89 1 69483000 39191 1995 26198 26696 45961;45962;45963 45961 0.030514939002614483 LYPSKFPLYP 10 Unmodified _LYPSKFPLYP_ 0 0 0 ENST00000368521.9_1_1:154179764-154179932:-|nuORF ENST00000368521.9_1_1:154179764-154179932:-|nuORF ENST00000368521.9_1_1:154179764-154179932:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8916931152344 3 408.893625 1223.65905 0.64812 0.00026501 -0.14494 -5.9264E-05 0.50318 0.00020575 408.8936889447098 46.266 0.21093 41.311 41.19 41.401 -4.9549 19 13 2 0 0 0 0.34435 1 28510 28510 24.882 5.6246 1 17790000 39192 12272 26199 26697 45964 45964 0.05616346205351874 LYPSKSILL 9 Unmodified _LYPSKSILL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3192138671875 2 517.318243 1032.62193 1.2899 0.00066731 -0.060372 -3.1232E-05 1.2296 0.00063608 517.318245896653 64.547 0.94628 58.371 58.09 59.036 -6.1757 111 52 3 0 0 0 0.05483 1 41718 41718 43.772 0 1 88478000 39193 7822 26200 26698 45965 45965 0.10692674659571821 LYPSTLFLL 9 Unmodified _LYPSTLFLL_ 0 0 0 nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB nc|ENSG00000107758|P16298-2|PPP3CB nc|ENSG00000107758|P16298-2|PPP3CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8130493164062 2 533.812793 1065.61103 0.63353 0.00033819 -0.35297 -0.00018842 0.28056 0.00014977 533.81299460333 101.74 0.21157 95.564 95.395 95.606 -6.1757 19 13 2 0 0 0 0.03327 1 68285 68285 53.576 9.1686 1 76727000 39194 2515 26201 26699 45966 45966 0.08085272285279643 LYPTDLVRF 9 Unmodified _LYPTDLVRF_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.31201171875 2 562.310949 1122.60735 0.69285 0.0003896 0.70026 0.00039376 1.3931 0.00078336 562.3108041865648 83.866 0.34026 83.366 83.123 83.463 -0.49962 25 13 3 0 0 0 0.5029 1 45842 45842 7.2892 2.5332 1 569000 + 39195 17002 26202 26700 45967 45967 0.05094602511417179 LYPTDLVRF 9 Unmodified _LYPTDLVRF_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3121948242188 2 562.310949 1122.60735 0.9699 0.00054538 0.6047 0.00034003 1.5746 0.00088541 562.3111011832667 83.183 0.41656 83.246 82.995 83.412 0.063171 28 15 2 0 0 0 0.070838 1 45986 45986 39.957 23.015 1 8931700 + 39196 17002 26202 26700 45968 45968 0.05094602511417179 LYPTDLVRF 9 Unmodified _LYPTDLVRF_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 562.310949 1122.60735 0.9699 0.00054538 0.6047 0.00034003 1.5746 0.00088541 562.3111011832667 83.183 0.41656 83.246 82.995 83.412 0.063171 -0.060029 -2.7336E-05 NaN 39.957 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8931700 + 39197 17002 26202 26700 0.05094602511417179 LYPTPFLFFQE 11 Unmodified _LYPTPFLFFQE_ 0 0 0 ENST00000393784.7_1_5:172378384-172378771:+|nuORF ENST00000393784.7_1_5:172378384-172378771:+|nuORF ENST00000393784.7_1_5:172378384-172378771:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 701.3585815429688 2 701.358096 1400.70164 0.92186 0.00064655 0.13747 9.6414E-05 1.0593 0.00074297 701.3583695452758 63.671 0.29271 63.661 63.532 63.825 -0.010529 48 13 5 0 0 0 0.50515 1 34820 34820 16.149 0.90062 1 22618000 39198 12717 26203 26701 45969 45969 0.017316965428790354 LYPTTNPLT 9 Unmodified _LYPTTNPLT_ 0 0 0 REV__ENST00000436772.1_1_1:155168332-155170164:+|nuORF REV__ENST00000436772.1_1_1:155168332-155170164:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2737121582031 2 510.274032 1018.53351 0.31852 0.00016253 0.21154 0.00010794 0.53006 0.00027047 510.2741872456765 62.79 0.31871 62.304 62.141 62.46 -0.48617 35 15 3 0 0 0 0.031062 1 34203 34203 54.774 4.8406 1 11236000 + 39199 26859 26204 26702 45970 45970 0.02498634349092299 LYPVLMRAL 9 Unmodified _LYPVLMRAL_ 0 0 0 ENSG00000103932|ENST00000304330|RPAP1;nc|ENSG00000103932|Q9BWH6-2|RPAP1;nc|ENSG00000103932|Q9BWH6-3|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 ENSG00000103932|ENST00000304330|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2151794433594 3 359.215934 1074.62597 -0.041688 -1.4975E-05 -1.3469 -0.00048383 -1.3886 -0.00049881 359.21547244751685 15.189 0.095716 15.195 15.132 15.228 0.0057774 6 4 2 0 0 0 0.52844 1 7563 7563 5.7319 0.43497 1 799470 39200 2166 26205 26703 45971 45971 0.091644408816137 LYPYDTDEC 9 Unmodified _LYPYDTDEC_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.72265625 2 559.720972 1117.42739 1.1396 0.00063785 1.9191 0.0010741 3.0587 0.001712 559.7219266863175 80.091 0.35783 73.916 73.696 74.054 -6.1757 33 21 2 0 0 0 0.49272 1 52615 52615 7.9102 2.6795 1 11713000 + 39201 17512 26206 26704 45972 45972 -0.12662489278545763 LYQAGLHF 8 Unmodified _LYQAGLHF_ 0 0 0 ENST00000514430.5_1_4:103553216-103586042:-|nuORF;ENSG00000109323|ENST00000647097|MANBA ENST00000514430.5_1_4:103553216-103586042:-|nuORF ENST00000514430.5_1_4:103553216-103586042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7506103515625 2 474.750527 947.486502 0.0097925 4.649E-06 0.53162 0.00025239 0.54141 0.00025703 474.75060330507733 34.751 0.32835 34.778 34.668 34.996 0.027401 30 14 3 0 0 0 0.72953 1 18319 18319 14.582 0 1 7122600 39202 2643 26207 26705 45973 45973 0.010658195886207977 LYQAGLHF 8 Unmodified _LYQAGLHF_ 0 0 0 ENST00000514430.5_1_4:103553216-103586042:-|nuORF;ENSG00000109323|ENST00000647097|MANBA ENST00000514430.5_1_4:103553216-103586042:-|nuORF ENST00000514430.5_1_4:103553216-103586042:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 474.750527 947.486502 -0.21227 -0.00010077 1.8175 0.00086286 1.6052 0.00076209 474.75106970158464 35.005 0.18262 34.783 34.669 34.852 -0.2224 0.0022499 0.00096946 NaN 14.582 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 824960 39203 2643 26207 26705 0.010658195886207977 LYQAGLHF 8 Unmodified _LYQAGLHF_ 0 0 0 ENST00000514430.5_1_4:103553216-103586042:-|nuORF;ENSG00000109323|ENST00000647097|MANBA ENST00000514430.5_1_4:103553216-103586042:-|nuORF ENST00000514430.5_1_4:103553216-103586042:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 474.750527 947.486502 0.0097925 4.649E-06 0.53162 0.00025239 0.54141 0.00025703 474.75060330507733 34.751 0.32835 34.778 34.668 34.996 0.027401 -0.0022499 -0.0002515 NaN 14.582 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 7122600 39204 2643 26207 26705 0.010658195886207977 LYQAVALTL 9 Unmodified _LYQAVALTL_ 0 0 0 REV__ENSG00000165591|ENST00000374900|FAAH2 REV__ENSG00000165591|ENST00000374900|FAAH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7745666503906 2 496.294768 990.574983 0.77948 0.00038685 -0.21496 -0.00010668 0.56453 0.00028017 496.29469306381276 81.916 0.74486 75.74 75.361 76.106 -6.1757 52 41 2 0 0 0 0.18118 1 53892 53892 7.9102 0 1 8196600 + 39205 22024 26208 26706 45974 45974 0.0793181510841805 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7886352539062 2 558.78985 1115.56515 0.63047 0.0003523 0.3829 0.00021396 1.0134 0.00056626 558.7900347259251 64.875 0.42604 64.39 64.189 64.615 -0.48512 64 19 4 0 0 0 0.094905 2 35332 35332;35439 43.772 15.286 1 32105000 39206 7559 26209 26707 45975;45976 45975 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7904052734375 2 558.78985 1115.56515 1.1476 0.00064126 -0.081574 -4.5583E-05 1.066 0.00059567 558.789787843702 64.415 0.41372 64.404 64.173 64.586 -0.010529 77 20 5 0 0 0 0.047194 2 35329 35212;35329 57.722 19.748 1 94015000 39207 7559 26209 26707 45977;45978 45978 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7907104492188 2 558.78985 1115.56515 0.8739 0.00048833 0.42594 0.00023801 1.2998 0.00072634 558.7899776851751 69.782 0.7837 63.606 63.243 64.027 -6.1757 116 43 4 0 0 0 0.037118 4 45686 45449;45569;45686;45818 63.961 20.102 1 272570000 39208 7559 26209 26707 45979;45980;45981;45982 45981 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7894287109375 2 558.78985 1115.56515 1.1166 0.00062392 0.10409 5.8165E-05 1.2206 0.00068208 558.7897641191347 70.477 0.75323 64.301 63.973 64.726 -6.1757 60 40 2 0 0 0 0.067618 2 46097 45959;46097 51.63 15.586 1 30811000 39209 7559 26209 26707 45983;45984 45984 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.789794921875 2 558.78985 1115.56515 1.2939 0.000723 0.39411 0.00022022 1.688 0.00094322 559.2917939591293 71.327 0.69403 65.151 64.749 65.443 -6.1757 58 34 2 0 0 0 0.13639 1 46460 46460 38.176 9.6887 1 31465000 39210 7559 26209 26707 45985 45985 0.011986271030536955 LYQDGVFKF 9 Unmodified _LYQDGVFKF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 558.78985 1115.56515 0.36401 0.00020341 -0.95891 -0.00053583 -0.59489 -0.00033242 558.7892524004079 64.429 0.2189 64.429 64.277 64.496 0 0.048125 -0.0011299 NaN 57.722 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 672700 39211 7559 26209 26707 0.011986271030536955 LYQDKFPFF 9 Unmodified _LYQDKFPFF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3076171875 2 602.8055 1203.59645 1.2866 0.00077558 -0.95343 -0.00057473 0.33319 0.00020085 602.8048670490077 82.268 0.5385 82.33 82.125 82.664 0.062004 47 20 3 0 0 0 0.0094097 2 45492 45492;45605 82.529 58.509 1 26772000 39212 5575 26210 26708 45986;45987 45986 0.002792001371290098 LYQDQILEKF 10 Unmodified _LYQDQILEKF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000368657.7_1_6:112400794-112408637:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8439331054688 2 648.845353 1295.67615 -0.0079262 -5.1429E-06 -0.6349 -0.00041195 -0.64283 -0.0004171 648.8450243949511 63.436 0.29868 63.436 63.244 63.543 0 28 16 2 0 0 0 0.077181 1 35356 35356 51.765 17.543 1 2598300 39213 1138 26211 26709 45988 45988 0.04014222020464331 LYQDQILEKF 10 Unmodified _LYQDQILEKF_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000368657.7_1_6:112400794-112408637:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.8446044921875 2 648.845353 1295.67615 0.40577 0.00026328 -1.5207 -0.00098671 -1.1149 -0.00072342 648.8447540250268 63.914 0.33652 63.429 63.255 63.592 -0.48512 53 18 4 0 0 0 0.032752 2 34832 34832;34933 66.683 24.37 1 20885000 39214 1138 26211 26709 45989;45990 45989 0.04014222020464331 LYQEHHEDFF 10 Unmodified _LYQEHHEDFF_ 0 0 0 ENST00000411645.1_1_1:205595116-205595278:+|nuORF ENST00000411645.1_1_1:205595116-205595278:+|nuORF ENST00000411645.1_1_1:205595116-205595278:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.8685913085938 3 455.535048 1363.58332 0.43003 0.0001959 -2.3578 -0.0010741 -1.9278 -0.00087818 455.5340520819488 71.746 0.21736 71.27 71.171 71.389 -0.4761 15 8 2 0 0 0 0.70951 1 39266 39266 0.77653 0 1 667780 39215 12976 26212 26710 45991 45991 -0.0839328271292743 LYQEIIHYF 9 Unmodified _LYQEIIHYF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.817626953125 2 613.316232 1224.61791 0.8136 0.00049899 -0.18895 -0.00011589 0.62465 0.00038311 613.3159244809956 74.306 0.30789 73.83 73.667 73.974 -0.47588 35 12 4 0 0 0 0.052168 1 40639 40639 44.407 29.825 1 4290600 39216 6072 26213 26711 45992 45992 0.014585851658466709 LYQEIIHYF 9 Unmodified _LYQEIIHYF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3153076171875 2 613.316232 1224.61791 0.56674 0.00034759 -1.953 -0.0011978 -1.3863 -0.00085024 613.3147865565484 73.809 0.31273 73.853 73.672 73.985 0.043976 37 14 4 0 0 0 0.0090948 1 40649 40649 85.272 47.096 1 11472000 39217 6072 26213 26711 45993 45993 0.014585851658466709 LYQEIIHYF 9 Unmodified _LYQEIIHYF_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3161010742188 2 613.316232 1224.61791 0.76106 0.00046677 -0.062095 -3.8084E-05 0.69896 0.00042869 613.3158822458539 90.418 0.49225 84.243 83.968 84.46 -6.1757 67 28 3 0 0 0 0.0090948 3 59602 59602;59734;59870 85.272 47.096 1 30630000 39218 6072 26213 26711 45994;45995;45996 45994 0.014585851658466709 LYQEIISYF 9 Unmodified _LYQEIISYF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3038940429688 2 588.30279 1174.59103 0.96167 0.00056575 0.31755 0.00018682 1.2792 0.00075257 588.3029894847131 99.447 0.13548 93.271 93.188 93.324 -6.1757 24 8 4 0 0 0 0.070838 1 66222 66222 39.957 20.595 1 98324000 39219 5855 26214 26712 45997 45997 0.010714765546708804 LYQEILAQL 9 Unmodified _LYQEILAQL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.8104858398438 2 545.810782 1089.60701 0.3295 0.00017984 0.32542 0.00017762 0.65492 0.00035746 545.8110194057708 84.171 0.35916 83.671 83.528 83.887 -0.49961 36 15 3 0 0 0 0.11005 1 46059 46059 41.84 14.211 1 1934200 39220 5401 26215 26713 45998 45998 0.0657918279155183 LYQEILAQL 9 Unmodified _LYQEILAQL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.810546875 2 545.810782 1089.60701 0.77256 0.00042167 0.74165 0.0004048 1.5142 0.00082648 545.8112401506479 93.683 0.74019 87.507 87.272 88.012 -6.1757 105 43 3 0 0 0 0.012228 3 62238 61967;62104;62238 92.491 24.411 1 36682000 39221 5401 26215 26713 45999;46000;46001 46001 0.0657918279155183 LYQEVFGRL 9 Unmodified _LYQEVFGRL_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8081665039062 2 562.808574 1123.60259 0.78559 0.00044213 0.49962 0.00028119 1.2852 0.00072332 562.808848508929 62.588 0.20315 62.1 62.04 62.243 -0.48764 14 9 2 0 0 0 0.028475 1 34119 34119 56.177 3.9087 1 2434800 39222 1350 26216 26714 46002 46002 0.04573718368669688 LYQEVFGRL 9 Unmodified _LYQEVFGRL_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.808837890625 2 562.808574 1123.60259 0.72345 0.00040716 -0.57044 -0.00032105 0.15301 8.6115E-05 562.8082862485717 62.23 0.26867 62.198 62.004 62.272 -0.032787 33 13 3 0 0 0 0.0082353 1 33943 33943 96.111 50.09 1 27646000 39223 1350 26216 26714 46003 46003 0.04573718368669688 LYQEYNAYL 9 Unmodified _LYQEYNAYL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2817993164062 2 588.782222 1175.54989 0.4052 0.00023858 -2.272 -0.0013377 -1.8668 -0.0010991 588.7812368178792 59.882 0.2692 59.882 59.754 60.023 0 17 12 2 0 0 0 0.23158 1 33387 33387 20.454 7.4112 1 2776300 39224 3879 26217 26715 46004 46004 -0.030862844848115856 LYQEYNAYL 9 Unmodified _LYQEYNAYL_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK;nc|ENSG00000125755|Q92797-2|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.782222 1175.54989 -0.092061 -5.4204E-05 0.30214 0.00017789 0.21008 0.00012369 588.7829852394392 60.522 0.24118 60.033 59.907 60.148 -0.48932 0.075353 0.0016707 NaN 20.454 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2344200 39225 3879 26217 26715 -0.030862844848115856 LYQFLLGLL 9 Unmodified _LYQFLLGLL_ 0 0 0 nc|ENSG00000269404|Q01892-3|SPIB;ENSG00000269404|ENST00000595883|SPIB nc|ENSG00000269404|Q01892-3|SPIB nc|ENSG00000269404|Q01892-3|SPIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3328857421875 2 540.328611 1078.64267 0.4181 0.00022591 2.3963 0.0012948 2.8144 0.0015207 540.3321388729488 68.1 0.34028 68.125 67.921 68.261 0.025146 39 16 3 0 0 0 0.078314 1 37382 37382 42.095 7.9921 1 4978600 39226 10879 26218 26716 46005 46005 0.1064926503922834 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.285888671875 2 573.784567 1145.55458 1.6704 0.00095844 -0.50243 -0.00028829 1.168 0.00067015 573.7842271421457 92.712 0.4422 92.742 92.547 92.989 0.030197 59 17 4 0 0 0 0.013472 2 51508 51508;51611 70.716 54.868 1 33993000 39227 8793 26219 26717 46006;46007 46006 -0.012373555513931933 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1147.066772460938 1 1146.56186 1145.55458 1.9976 0.0022904 -0.6482 -0.0007432 1.3494 0.0015472 1146.5611910857083 92.717 0.35213 92.748 92.573 92.925 0.030197 27 13 3 0 0 0 0.019626 1 51510 51510 97.075 54.98 1 13356000 39228 8793 26219 26717 46008 46008 -0.012373555513931933 LYQFNPAFF 9 Unmodified _LYQFNPAFF_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2864990234375 2 573.784567 1145.55458 0.35892 0.00020594 0.63472 0.00036419 0.99364 0.00057013 573.7848612850901 99.771 0.21301 93.595 93.49 93.703 -6.1757 45 14 4 0 0 0 0.023164 1 66502 66502 60.39 45.551 1 550640000 39229 8793 26219 26717 46009 46009 -0.012373555513931933 LYQGELWCYMF 11 Unmodified _LYQGELWCYMF_ 0 0 0 ENST00000272797.8_1_2:170592417-170592516:+|nuORF ENST00000272797.8_1_2:170592417-170592516:+|nuORF ENST00000272797.8_1_2:170592417-170592516:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2163391113281 3 484.882403 1451.62538 0.34606 0.0001678 -1.2676 -0.00061464 -0.92155 -0.00044684 484.88164103401596 59.895 0.25194 59.404 59.293 59.545 -0.49079 19 12 2 0 0 0 0.631 1 32601 32601 9.7643 3.1408 1 3217200 39230 11375 26220 26718 46010 46010 -0.0823676662039361 LYQHAVEYF 9 Unmodified _LYQHAVEYF_ 0 0 0 ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2849731445312 2 585.284931 1168.55531 1.0759 0.00062973 2.1897 0.0012816 3.2657 0.0019114 585.2861123974607 55.184 0.36071 49.263 48.956 49.317 -5.9211 46 22 3 0 0 0 0.023481 1 35000 35000 60.074 21.898 1 66844000 39231 4427 26221 26719 46011 46011 -0.022225609023507786 LYQHAVQYF 9 Unmodified _LYQHAVQYF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7928466796875 2 584.792924 1167.57129 0.49209 0.00028777 1.2842 0.00075098 1.7763 0.0010388 584.7938508707551 47.756 0.2689 47.403 47.266 47.535 -0.3526 27 12 3 0 0 0 0.062454 1 25605 25605 54.774 34.359 1 9057600 39232 3445 26222 26720 46012 46012 -0.005788546654230231 LYQHAVQYF 9 Unmodified _LYQHAVQYF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7935180664062 2 584.792924 1167.57129 0.97553 0.00057048 -0.18845 -0.0001102 0.78708 0.00046028 584.7926910470867 47.531 0.34398 47.492 47.237 47.581 -0.038647 40 15 4 0 0 0 0.13231 1 25571 25571 39.957 10.876 1 9115500 39233 3445 26222 26720 46013 46013 -0.005788546654230231 LYQHAVQYF 9 Unmodified _LYQHAVQYF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF ENSG00000119541|ENST00000238497|VPS4B ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7945556640625 2 584.792924 1167.57129 0.59098 0.0003456 2.7716 0.0016208 3.3626 0.0019664 585.2955875033899 53.154 0.39296 47.35 47.122 47.515 -5.8042 40 22 2 0 0 0 0.036857 1 33534 33534 57.471 21.344 1 50519000 39234 3445 26222 26720 46014 46014 -0.005788546654230231 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8070068359375 2 588.806031 1175.59751 0.014388 8.472E-06 -0.53184 -0.00031315 -0.51746 -0.00030468 588.8055692981042 62.265 0.18253 62.265 62.122 62.304 0 18 10 2 0 0 0 0.10247 1 34700 34700 32.786 7.3864 1 2917100 39235 3164 26223 26721 46015 46015 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8058471679688 2 588.806031 1175.59751 0.57416 0.00033807 -0.64097 -0.00037741 -0.066814 -3.934E-05 588.8056467350987 62.623 0.36903 62.136 61.936 62.305 -0.48764 57 17 4 0 0 0 0.044011 2 34083 34083;34193 47.749 15.443 1 56013000 39236 3164 26223 26721 46016;46017 46016 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3079223632812 2 588.806031 1175.59751 0.37249 0.00021932 0.057011 3.3569E-05 0.4295 0.00025289 588.806093061553 62.189 0.28821 62.157 62.004 62.292 -0.032787 31 14 3 0 0 0 0.028475 1 33933 33933 56.177 16.22 1 18898000 39237 3164 26223 26721 46018 46018 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8064575195312 2 588.806031 1175.59751 0.50914 0.00029979 -0.66488 -0.00039149 -0.15574 -9.17E-05 588.8056321081554 67.753 0.66941 61.577 61.288 61.957 -6.1757 104 38 3 0 0 0 0.044011 2 44073 44073;44228 47.749 7.7914 1 81388000 39238 3164 26223 26721 46019;46020 46019 0.016734145060127048 LYQHEINLF 9 Unmodified _LYQHEINLF_ 0 0 0 ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3080444335938 2 588.806031 1175.59751 0.77403 0.00045575 -0.60322 -0.00035518 0.1708 0.00010057 588.8059148597478 70.23 0.90164 64.054 63.525 64.427 -6.1757 91 50 2 0 0 0 0.028475 3 46008 45878;46008;46022 56.177 7.8312 1 29048000 39239 3164 26223 26721 46021;46022;46023 46022 0.016734145060127048 LYQHIKTGF 9 Unmodified _LYQHIKTGF_ 0 0 0 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.80322265625 2 553.803291 1105.59203 -0.12237 -6.7767E-05 1.0851 0.00060094 0.96275 0.00053317 553.8037103880127 34.841 0.15942 34.649 34.541 34.7 -0.19131 9 6 2 0 0 0 0.46577 1 18245 18245 9.3474 0.75416 1 1187400 39240 845 26224 26722 46024 46024 0.043457357142415276 LYQHIKTGF 9 Unmodified _LYQHIKTGF_ 0 0 0 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5385437011719 3 369.537953 1105.59203 -0.14153 -5.2301E-05 0.30642 0.00011323 0.16489 6.0932E-05 369.538085560498 32.645 0.22427 32.675 32.539 32.763 0.029743 17 8 3 0 0 0 0.10247 1 17143 17143 30.703 23.094 1 3213900 39241 845 26224 26722 46025 46025 0.043457357142415276 LYQHIKTGF 9 Unmodified _LYQHIKTGF_ 0 0 0 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5383911132812 3 369.537953 1105.59203 1.7713 0.00065456 -0.3007 -0.00011112 1.4706 0.00054344 369.53777975974793 37.07 0.38839 32.786 32.585 32.974 -4.2835 51 23 3 0 0 0 0.19127 1 21792 21792 22.658 15.049 1 12770000 39242 845 26224 26722 46026 46026 0.043457357142415276 LYQHLLFNF 9 Unmodified _LYQHLLFNF_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20221201_MKP_PDAC_01 4 597.818603515625 2 597.818941 1193.62333 NaN NaN NaN NaN NaN NaN NaN 98.631 1 92.456 91.956 92.956 -6.1757 0 0 0 0.08978 1 65453 65453 46.021 11.919 1 39243 6755 26225 26723 46027 46027 0.03426308748316842 LYQHPGED 8 Unmodified _LYQHPGED_ 0 0 0 ENST00000490517.5_1_17:17910331-17910445:+|nuORF ENST00000490517.5_1_17:17910331-17910445:+|nuORF ENST00000490517.5_1_17:17910331-17910445:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.7165222167969 2 479.716882 957.41921 NaN NaN NaN NaN NaN NaN NaN 93.266 1 87.091 86.591 87.591 -6.1757 0 0 0 0.93587 1 61721 61721 13.508 0 1 39244 14260 26226 26724 46028 46028 -0.061202554129977216 LYQILQGIVF 10 Unmodified _LYQILQGIVF_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3519287109375 2 597.350074 1192.6856 0.87824 0.00052462 0.83611 0.00049945 1.7144 0.0010241 597.3505348298542 100.56 0.12958 100.52 100.45 100.58 -0.04216 13 4 4 0 0 0 0.49559 1 55876 55876 25.399 11.493 1 76374000 39245 7969 26227 26725 46029 46029 0.09696035096658306 LYQKEVSHL 9 Unmodified _LYQKEVSHL_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8071899414062 2 558.806031 1115.59751 -0.11414 -6.3779E-05 0.84968 0.00047481 0.73554 0.00041103 558.8065720869314 25.299 0.14379 25.299 25.202 25.346 0 11 6 3 0 0 0 0.07916 1 12970 12970 37.974 17.52 1 1158500 39246 853 26228 26726 46030 46030 0.04433414506047484 LYQKEVSHL 9 Unmodified _LYQKEVSHL_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8738403320312 3 372.873113 1115.59751 1.2308 0.00045893 -0.19521 -7.2788E-05 1.0356 0.00038615 372.873114258227 28.495 0.39975 25.347 25.097 25.497 -3.1482 45 20 3 0 0 0 0.05447 2 15935 15806;15935 47.594 30.481 1 22267000 39247 853 26228 26726 46031;46032 46032 0.04433414506047484 LYQKEVSHL 9 Unmodified _LYQKEVSHL_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8068237304688 2 558.806031 1115.59751 0.84119 0.00047006 0.68022 0.00038011 1.5214 0.00085017 558.8066283370615 28.519 0.22724 25.371 25.193 25.421 -3.1482 17 11 2 0 0 0 0.0087807 1 15928 15928 106.94 66.983 1 4228300 39248 853 26228 26726 46033 46033 0.04433414506047484 LYQKEVSHL 9 Unmodified _LYQKEVSHL_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 372.873113 1115.59751 -0.45004 -0.00016781 1.0171 0.00037923 0.56702 0.00021143 372.87334100052254 25.302 0.19798 25.302 25.168 25.366 0 -0.022471 0.00060127 NaN 47.594 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2665100 39249 853 26228 26726 0.04433414506047484 LYQKHFLLL 9 Unmodified _LYQKHFLLL_ 0 0 0 ENST00000272298.11_1_2:47387407-47387581:-|nuORF ENST00000272298.11_1_2:47387407-47387581:-|nuORF ENST00000272298.11_1_2:47387407-47387581:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5727233886719 3 392.237615 1173.69102 0.20919 8.2051E-05 1.3291 0.00052134 1.5383 0.00060339 392.23817072546876 60.68 0.26962 60.637 60.495 60.765 -0.04351 20 13 2 0 0 0 0.15471 1 33110 33110 27.629 9.4825 1 5945800 39250 11370 26229 26727 46034 46034 0.11111758679157901 LYQKIAEEI 9 Unmodified _LYQKIAEEI_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.7447509765625 2 553.808239 1105.60193 0.59701 0.00033063 0.054264 3.0052E-05 0.65128 0.00036068 553.808368923258 52.147 0.32034 46.412 46.278 46.598 -5.7345 32 20 2 0 0 0 0.16418 1 32840 32840 25.399 3.6527 1 62358000 39251 851 26230 26728 46035 46035 0.05334878928942999 LYQKIRILEKP 11 Unmodified _LYQKIRILEKP_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-2|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.9320068359375 2 700.934837 1399.85512 NaN NaN NaN NaN NaN NaN NaN 101.02 1 100.98 100.48 101.48 -0.04216 0 0 0 0.94301 1 56120 56120 0.35063 0.043601 1 39252 7218 26231 26729 46036 46036 0.17118731379218843 LYQLQLAY 8 Unmodified _LYQLQLAY_ 0 0 0 nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.773193359375 2 506.279118 1010.54368 0.54909 0.00027799 0.87031 0.00044062 1.4194 0.00071861 506.2794525695642 80.191 0.87181 79.702 79.403 80.275 -0.48932 93 34 4 0 0 0 0.76859 1 44135 44135 11.114 0.93107 1 25329000 39253 1250 26232 26730 46037 46037 0.03883242074334703 LYQLQNTL 8 Unmodified _LYQLQNTL_ 0 0 0 REV__nc|ENSG00000137948|Q58F21-4|BRDT REV__nc|ENSG00000137948|Q58F21-4|BRDT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2773132324219 2 496.7742 991.533846 0.5534 0.00027491 1.5612 0.00077555 2.1146 0.0010505 496.7750229547961 82.989 0.47334 82.491 82.224 82.698 -0.49751 32 19 2 0 0 0 0.70294 1 45399 45399 16.942 1.0951 1 1110500 + 39254 20286 26233 26731 46038 46038 0.0377405406896969 LYQLQVNTL 9 Unmodified _LYQLQVNTL_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3084106445312 2 546.308406 1090.60226 0.40589 0.00022174 -0.20615 -0.00011262 0.19974 0.00010912 546.3082393125819 68.21 0.3242 67.728 67.576 67.9 -0.48117 33 14 3 0 0 0 0.1685 1 37250 37250 36.044 7.5574 1 5406200 39255 7139 26234 26732 46039 46039 0.06058298648804339 LYQLQVNTL 9 Unmodified _LYQLQVNTL_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7669067382812 2 546.308406 1090.60226 0.78188 0.00042715 -2.1675 -0.0011841 -1.3856 -0.00075699 546.3072414267799 75.168 0.56773 68.993 68.702 69.27 -6.1757 50 30 2 0 0 0 0.15672 1 49098 49098 26.884 6.43 1 24425000 39256 7139 26234 26732 46040 46040 0.06058298648804339 LYQLQVNTL 9 Unmodified _LYQLQVNTL_ 0 0 0 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 ENSG00000164105|ENST00000296504|SAP30 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.308406 1090.60226 0.31863 0.00017407 0.92478 0.00050522 1.2434 0.00067929 546.3094052149579 67.72 0.26669 67.738 67.668 67.934 0.018036 0.0046354 0.0010016 NaN 36.044 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1634300 39257 7139 26234 26732 0.06058298648804339 LYQNVWQLL 9 Unmodified _LYQNVWQLL_ 0 0 0 REV__ENST00000448404.5_1_11:64532928-64535069:-|nuORF REV__ENST00000448404.5_1_11:64532928-64535069:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5525512695312 3 392.885241 1175.63389 NaN NaN NaN NaN NaN NaN NaN 27.766 1 27.796 27.296 28.296 0.029564 0 0 0 0.82015 1 14438 14438 2.9952 0 1 + 39258 26739 26235 26733 46041 46041 0.05310291402770417 LYQPNFNTNF 10 Unmodified _LYQPNFNTNF_ 0 0 0 ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8008422851562 2 629.29857 1256.58259 0.71184 0.00044796 0.69781 0.00043913 1.4096 0.00088709 629.8010251322789 72.58 0.30672 66.404 66.293 66.6 -6.1757 26 15 2 0 0 0 0.020813 1 47478 47478 74.929 34.979 1 14297000 39259 10896 26236 26734 46042 46042 -0.03544077361948439 LYQQHYDEAY 10 Unmodified _LYQQHYDEAY_ 0 0 0 REV__nc|ENSG00000175806|Q9UJ68-2|MSRA REV__nc|ENSG00000175806|Q9UJ68-2|MSRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.2919311523438 2 665.290942 1328.56733 0.29841 0.00019853 0.45286 0.00030128 0.75127 0.00049981 665.2910202727048 47.911 0.24108 47.911 47.81 48.051 0 23 11 3 0 0 0 0.69064 1 26258 26258 3.9444 0 1 2087700 + 39260 22892 26237 26735 46043 46043 -0.08380988949784296 LYQQLQHQQF 10 Unmodified _LYQQLQHQQF_ 0 0 0 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8381958007812 2 666.838394 1331.66223 NaN NaN NaN NaN NaN NaN NaN 40.111 1 39.813 39.313 40.313 -0.29716 0 0 0 0.51756 1 21189 21189 25.399 9.5521 1 39261 5799 26238 26736 46044 46044 0.009669893120417328 LYQQQNQPMD 10 Unmodified _LYQQQNQPMD_ 0 0 0 KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant;nc|ENSG00000183878|O14607-2|UTY;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-3|UTY;nc|ENSG00000183878|O14607|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant KDM6A|p.T825Nfs*10|1|0.16|ENSG00000147050|chrX:45070125-45070126|-/C|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.1912536621094 3 422.192405 1263.55539 -0.62498 -0.00026386 0.23863 0.00010075 -0.38635 -0.00016312 422.19258728245694 15.729 0.35845 15.729 15.508 15.866 0 260 90 4 0 0 0 0.72247 1 7481 7481 0.13989 0.017027 1 3378700 39262 5815 26239 26737 46045 46045 -0.06584928964639403 LYQRAFQHL 9 Unmodified _LYQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5489807128906 3 392.548852 1174.62473 -0.13965 -5.4818E-05 0.80837 0.00031732 0.66872 0.00026251 392.5488589919358 35.264 0.43695 35.292 35.102 35.539 0.027401 73 20 5 0 0 0 0.2001 1 18577 18577 21.537 5.7984 1 184440000 39263 10766 26240 26738 46046 46046 0.0443994283707525 LYQRAFQHL 9 Unmodified _LYQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3201904296875 2 588.31964 1174.62473 0.089036 5.2382E-05 -0.2961 -0.0001742 -0.20706 -0.00012182 588.3194122242095 35.249 0.27235 35.276 35.143 35.415 0.027401 37 12 4 0 0 0 0.0036082 2 18594 18594;18704 123.45 67.948 1 31535000 39264 10766 26240 26738 46047;46048 46047 0.0443994283707525 LYQRAFQHL 9 Unmodified _LYQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5492553710938 3 392.548852 1174.62473 1.1199 0.00043961 0.33136 0.00013008 1.4512 0.00056968 392.5488755346203 39.457 0.59221 35.006 34.689 35.281 -4.4509 124 36 5 0 0 0 0.095405 3 23517 23260;23384;23517 26.268 9.7023 1 490170000 39265 10766 26240 26738 46049;46050;46051 46051 0.0443994283707525 LYQRAFQHL 9 Unmodified _LYQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3185424804688 2 588.31964 1174.62473 0.77595 0.00045651 -0.36133 -0.00021258 0.41462 0.00024393 588.3194345912234 39.421 0.44426 34.971 34.75 35.194 -4.4509 86 26 4 0 0 0 0.0095811 2 23297 23297;23420 81.613 45.107 1 96039000 39266 10766 26240 26738 46052;46053 46052 0.0443994283707525 LYQRAFQHL 9 Unmodified _LYQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 392.5489807128906 3 392.548852 1174.62473 NaN NaN NaN NaN NaN NaN NaN 39.98 1 35.451 34.951 35.951 -4.5294 0 0 0 0.43505 1 23808 23808 12.241 1.4411 1 39267 10766 26240 26738 46054 46054 0.0443994283707525 LYQRMYFI 8 Unmodified _LYQRMYFI_ 0 0 0 ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ENSG00000047936|ENST00000368507|ROS1 ENSG00000047936|ENST00000368507|ROS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2926025390625 2 567.294245 1132.57394 0.70427 0.00039953 2.5768 0.0014618 3.2811 0.0018613 567.2969097706755 62.769 0.54524 62.283 62.12 62.665 -0.48617 53 26 3 0 0 0 0.77907 1 34182 34182 10.183 0.80027 1 13594000 39268 695 26241 26739 46055 46055 0.012952774678751666 LYQRQELI 8 Unmodified _LYQRQELI_ 0 0 0 REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8015747070312 2 531.800749 1061.58694 0.85092 0.00045252 1.1451 0.00060894 1.996 0.0010615 531.8014273396005 59.653 0.57654 53.538 53.219 53.796 -6.1147 85 32 4 0 0 0 0.57045 2 38152 38117;38152 28.487 0 1 310120000 + 39269 20495 26242 26740 46056;46057 46057 0.05861431851622001 LYQRQELI 8 Unmodified _LYQRQELI_ 0 0 0 REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.800749 1061.58694 0.62526 0.00033251 -0.55023 -0.00029261 0.07503 3.9901E-05 531.800423771572 53.588 0.53041 53.588 53.327 53.858 0 0.022178 -0.0010444 NaN 28.487 71 24 4 NaN NaN NaN NaN 0 NaN NaN 0 70021000 + 39270 20495 26242 26740 0.05861431851622001 LYQRYFFQM 9 Oxidation (M) _LYQRYFFQM(Oxidation (M))_ LYQRYFFQM(1) LYQRYFFQM(89) 0 0 1 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.312744140625 2 656.313166 1310.61178 0.44489 0.00029199 -2.5494 -0.0016732 -2.1045 -0.0013812 656.3130234925393 54.377 0.34169 54.31 54.122 54.463 -0.066936 56 16 4 0 0 0 0.008678 2 29465 29465;29566 88.904 74.065 1 9913500 39271 8404 26243 26741 46058;46059 46058 1431 -0.031102563373224257 LYQRYFFQM 9 Unmodified _LYQRYFFQM_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MSMS AL20221201_MKP_PDAC_01 4 648.3154907226562 2 648.315709 1294.61686 NaN NaN NaN NaN NaN NaN NaN 83.421 1 77.245 76.745 77.745 -6.1757 0 0 0 0.056448 1 54853 54853 54.774 18.267 1 39272 8404 26243 26742 46060 46060 -0.018659524747135947 LYQVEKEMEE 10 Unmodified _LYQVEKEMEE_ 0 0 0 nc|ENSG00000089177|Q96L93-2|KIF16B;nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;nc|ENSG00000089177|Q96L93-4|KIF16B;ENSG00000089177|ENST00000354981|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.3037719726562 2 649.302661 1296.59077 1.3892 0.00090202 -1.284 -0.00083369 0.10524 6.8333E-05 649.302112226038 58.679 0.50169 52.604 52.403 52.905 -6.0745 58 27 3 0 0 0 0.13391 1 37680 37680 41.84 3.6641 1 26884000 39273 16070 26244 26743 46061 46061 -0.04566311227472397 LYQVSKEHWNQ 11 Unmodified _LYQVSKEHWNQ_ 0 0 0 nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B nc|ENSG00000068971|Q15173-2|PPP2R5B nc|ENSG00000068971|Q15173-2|PPP2R5B MSMS AL20221201_MKP_PDAC_01 4 477.9074096679688 3 477.905364 1430.69426 NaN NaN NaN NaN NaN NaN NaN 48.357 1 43.123 42.623 43.623 -5.2339 0 0 0 0.93224 1 30111 30111 2.6312 0.37851 1 39274 992 26245 26744 46062 46062 -0.003856430047790127 LYQVVSQRF 9 Unmodified _LYQVVSQRF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3154296875 2 570.314023 1138.61349 0.9027 0.00051482 0.86625 0.00049404 1.769 0.0010089 570.3143881097268 47.242 0.47613 47.209 47.069 47.545 -0.033417 57 22 4 0 0 0 0.0088231 2 25407 25407;25509 114.65 57.178 1 27991000 39275 16480 26246 26745 46063;46064 46063 0.04973120742965875 LYQVVSQRF 9 Unmodified _LYQVVSQRF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3152465820312 2 570.314023 1138.61349 0.71401 0.00040721 0.325 0.00018535 1.039 0.00059256 570.314496248854 53.174 0.37858 47.37 47.199 47.578 -5.8042 55 22 3 0 0 0 0.0091809 2 33524 33524;33646 103.35 48.58 1 76969000 39276 16480 26246 26745 46065;46066 46065 0.04973120742965875 LYQVVSQRF 9 Unmodified _LYQVVSQRF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.314023 1138.61349 0.79347 0.00045253 0.66813 0.00038104 1.4616 0.00083357 570.3141902787578 47.578 0.14074 47.225 47.125 47.266 -0.3526 -0.042993 2.1273E-05 NaN 114.65 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1436700 39277 16480 26246 26745 0.04973120742965875 LYQWWLTR 8 Unmodified _LYQWWLTR_ 0 0 0 REV__ENST00000263360.10_1_11:85975216-85975276:+|nuORF REV__ENST00000263360.10_1_11:85975216-85975276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5455932617188 3 389.209948 1164.60801 0.045337 1.7646E-05 -0.078119 -3.0405E-05 -0.032782 -1.2759E-05 389.20987764597146 21.083 0.22351 21.094 20.991 21.215 0.010551 37 24 2 0 0 0 0.79982 1 10768 10768 4.897 1.3005 1 2716700 + 39278 25047 26247 26746 46067 46067 0.03229441951111767 LYQYPNFAGP 10 Unmodified _LYQYPNFAGP_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.28564453125 2 585.284931 1168.55531 1.3962 0.00081719 -0.70843 -0.00041463 0.68779 0.00040255 585.284173333998 58.678 0.43051 52.603 52.475 52.905 -6.0745 36 23 2 0 0 0 0.27276 1 37615 37615 29.082 2.8134 1 11285000 39279 5657 26248 26747 46068 46068 -0.022225609023507786 LYQYPNFAGP 10 Unmodified _LYQYPNFAGP_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 585.284931 1168.55531 0.33366 0.00019529 0.63741 0.00037307 0.97107 0.00056835 585.2857486663185 53.455 0.36397 53.003 52.859 53.223 -0.45173 0.19976 0.0010709 NaN 29.082 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1228300 39280 5657 26248 26747 -0.022225609023507786 LYQYRAPF 8 Unmodified _LYQYRAPF_ 0 0 0 REV__ENST00000585609.1_1_19:11362722-11362998:-|nuORF REV__ENST00000585609.1_1_19:11362722-11362998:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2808227539062 2 529.276909 1056.53927 1.1901 0.00062991 1.1608 0.00061441 2.351 0.0012443 529.778154299175 94.566 0.98059 88.391 87.806 88.787 -6.1757 159 56 4 0 0 0 0.71616 1 62328 62328 15.768 3.2367 1 28658000 + 39281 29098 26249 26748 46069 46069 0.013257776514137731 LYRARWTI 8 Unmodified _LYRARWTI_ 0 0 0 ENSG00000253251|ENST00000510585|SHLD3 ENSG00000253251|ENST00000510585|SHLD3 ENSG00000253251|ENST00000510585|SHLD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.810302734375 2 539.811451 1077.60835 0.57747 0.00031172 -2.1454 -0.0011581 -1.5679 -0.00084636 539.8102820585048 45.883 0.17094 45.883 45.803 45.974 0 10 8 2 0 0 0 0.37649 1 25078 25078 46.921 3.0626 1 3020800 39282 10759 26250 26749 46070 46070 0.07264861671001199 LYREKVEVF 9 Unmodified _LYREKVEVF_ 0 0 0 nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000474616.5_1_22:37154357-37156899:-|nuORF;ENST00000471809.5_1_22:37154357-37154516:-|nuORF nc|ENSG00000100360|Q9BW83-2|IFT27 nc|ENSG00000100360|Q9BW83-2|IFT27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8890991210938 3 394.888763 1181.64446 -0.014114 -5.5733E-06 -0.061118 -2.4135E-05 -0.075231 -2.9708E-05 394.8889618076244 39.523 0.21654 39.226 39.091 39.308 -0.29716 26 9 4 0 0 0 0.1685 1 20846 20846 24.882 18.258 1 2661900 39283 1806 26251 26750 46071 46071 0.06090274057191891 LYREKVEVF 9 Unmodified _LYREKVEVF_ 0 0 0 nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000474616.5_1_22:37154357-37156899:-|nuORF;ENST00000471809.5_1_22:37154357-37154516:-|nuORF nc|ENSG00000100360|Q9BW83-2|IFT27 nc|ENSG00000100360|Q9BW83-2|IFT27 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.5843200683594 3 394.888763 1181.64446 0.72777 0.00028739 -0.15204 -6.0038E-05 0.57573 0.00022735 394.88901275231234 44.077 0.22654 39.313 39.171 39.398 -4.7648 21 14 2 0 0 0 0.19515 1 26916 26916 15.739 9.5328 1 9053100 39284 1806 26251 26750 46072 46072 0.06090274057191891 LYREKVEVF 9 Unmodified _LYREKVEVF_ 0 0 0 nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000474616.5_1_22:37154357-37156899:-|nuORF;ENST00000471809.5_1_22:37154357-37154516:-|nuORF nc|ENSG00000100360|Q9BW83-2|IFT27 nc|ENSG00000100360|Q9BW83-2|IFT27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 394.888763 1181.64446 0.17559 6.9338E-05 -0.75634 -0.00029867 -0.58075 -0.00022933 395.22256575979674 39.249 0.32637 39.249 39.036 39.362 0 -0.013353 -0.00059982 NaN 24.882 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1881800 39285 1806 26251 26750 0.06090274057191891 LYREKYDW 8 Unmodified _LYREKYDW_ 0 0 0 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2924194335938 2 586.790381 1171.56621 0.1378 8.0863E-05 -1.1068 -0.00064944 -0.96896 -0.00056858 586.7907272979379 58.042 0.60952 52.015 51.717 52.327 -6.0275 85 33 4 0 0 0 0.61462 1 37149 37149 24.674 0.65332 1 159780000 39286 1575 26252 26751 46073 46073 -0.01271158528061278 LYRELLPF 8 Unmodified _LYRELLPF_ 0 0 0 REV__ENSG00000154143|ENST00000284288|PANX3 REV__ENSG00000154143|ENST00000284288|PANX3 MSMS AL20221201_MKP_PDAC_01 4 525.7974243164062 2 525.80276 1049.59097 NaN NaN NaN NaN NaN NaN NaN 68.43 1 62.255 61.755 62.755 -6.1757 0 0 0 0.50394 1 44661 44661 40.449 2.2974 1 + 39287 21210 26253 26752 46074 46074 0.06815521345333764 LYRELVLYL 9 Unmodified _LYRELVLYL_ 0 0 0 REV__ENSG00000147262|ENST00000682440|GPR119 REV__ENSG00000147262|ENST00000682440|GPR119 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9022827148438 3 394.569142 1180.6856 NaN NaN NaN NaN NaN NaN NaN 27.729 1 27.758 27.258 28.258 0.029564 0 0 0 0.36855 1 14418 14418 21.59 1.1756 1 + 39288 20881 26254 26753 46075 46075 0.10248035096674357 LYRETDKK 8 Unmodified _LYRETDKK_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7901611328125 2 526.790381 1051.56621 -0.27456 -0.00014463 -0.11657 -6.141E-05 -0.39113 -0.00020604 526.7903132050311 34.317 0.34063 34.317 34.156 34.496 0 56 17 5 0 0 0 0.36356 1 18128 18128 48.346 3.9388 1 142810000 39289 4867 26255 26754 46076 46076 0.04248841471940068 LYRFQLAARS 10 Unmodified _LYRFQLAARS_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.90087890625 3 408.899773 1223.67749 NaN NaN NaN NaN NaN NaN NaN 48.588 1 48.545 48.045 49.045 -0.04369 0 0 0 0.54588 1 26219 26219 15.739 0 1 39290 5454 26256 26755 46077 46077 0.07459900899880267 LYRFVPEML 9 Unmodified _LYRFVPEML_ 0 0 0 REV__nc|ENSG00000160949|Q96HA7-2|TONSL REV__nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3168334960938 2 584.315177 1166.6158 0.43988 0.00025703 3.0417 0.0017773 3.4816 0.0020344 584.3171418929608 45.448 0.14722 45.42 45.343 45.49 -0.028011 11 7 2 0 0 0 0.1773 1 24421 24421 25.399 8.2864 1 8618100 + 39291 21573 26257 26756 46078 46078 0.039158331563839965 LYRGADEPLF 10 Unmodified _LYRGADEPLF_ 0 0 0 REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF REV__ENST00000426612.5_1_5:176516603-176517831:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8043212890625 2 590.803488 1179.59242 NaN NaN NaN NaN NaN NaN NaN 100.5 1 100.46 99.96 100.96 -0.04216 0 0 0 0.61997 1 55829 55829 20.415 1.1575 1 + 39292 21570 26258 26757 46079 46079 0.009811106434199246 LYRHPWYFPQF 11 Unmodified _LYRHPWYFPQF_ 0 0 0 REV__ENSG00000174792|ENST00000311623|ODAPH REV__ENSG00000174792|ENST00000311623|ODAPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 777.3872680664062 2 777.388054 1552.76155 0.16048 0.00012476 -0.94732 -0.00073643 -0.78684 -0.00061168 777.3875594001803 71.13 0.42691 70.653 70.434 70.861 -0.47735 74 18 5 0 0 0 0.68427 2 38854 38854;38953 5.7319 4.25 1 21041000 + 39293 22817 26259 26758 46080;46081 46080 0.007284319967766351 LYRHPWYFPQF 11 Unmodified _LYRHPWYFPQF_ 0 0 0 REV__ENSG00000174792|ENST00000311623|ODAPH REV__ENSG00000174792|ENST00000311623|ODAPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.388916015625 2 777.388054 1552.76155 1.0393 0.00080797 -0.94435 -0.00073413 0.094987 7.3841E-05 777.3876038601411 70.576 0.40682 70.611 70.379 70.785 0.035507 72 18 5 0 0 0 0.68427 2 38788 38788;38891 5.7319 5.3812 1 12574000 + 39294 22817 26259 26758 46082;46083 46082 0.007284319967766351 LYRHPWYFPQF 11 Unmodified _LYRHPWYFPQF_ 0 0 0 REV__ENSG00000174792|ENST00000311623|ODAPH REV__ENSG00000174792|ENST00000311623|ODAPH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 777.388054 1552.76155 0.16048 0.00012476 -0.94732 -0.00073643 -0.78684 -0.00061168 777.3875594001803 71.13 0.42691 70.653 70.434 70.861 -0.47735 0.020918 -2.0819E-06 NaN 5.7319 74 18 5 NaN NaN NaN NaN 0 NaN NaN 0 21041000 + 39295 22817 26259 26758 0.007284319967766351 LYRHQHYDW 9 Unmodified _LYRHQHYDW_ 0 0 0 REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8761291503906 3 439.875628 1316.60505 0.3671 0.00016148 0.91703 0.00040338 1.2841 0.00056486 439.876158531456 28.77 0.11745 28.799 28.753 28.871 0.029564 6 4 2 0 0 0 0.61256 1 15017 15017 0.26902 0.1097 1 1934900 + 39296 23227 26260 26759 46084 46084 -0.04058433173690901 LYRHVSHD 8 Unmodified _LYRHVSHD_ 0 0 0 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7594604492188 2 513.759415 1025.50428 -0.45051 -0.00023146 0.1337 6.8691E-05 -0.31681 -0.00016276 513.7593650632684 33.951 0.14486 33.951 33.864 34.009 0 11 6 2 0 0 0 0.6895 1 17868 17868 18.135 5.6034 1 2224300 39297 8651 26261 26760 46085 46085 -0.007454651565240056 LYRHVSHD 8 Unmodified _LYRHVSHD_ 0 0 0 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7583618164062 2 513.759415 1025.50428 0.22366 0.00011491 -0.88865 -0.00045655 -0.66499 -0.00034164 513.7588191065296 38.695 0.35789 34.245 33.976 34.334 -4.4509 29 22 2 0 0 0 0.55032 1 22820 22820 30.225 10.863 1 12855000 39298 8651 26261 26760 46086 46086 -0.007454651565240056 LYRHVSHD 8 Unmodified _LYRHVSHD_ 0 0 0 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 ENSG00000177051|ENST00000317683|FBXO46 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.759415 1025.50428 -0.33651 -0.00017289 -0.69852 -0.00035887 -1.035 -0.00053176 513.7586325295415 34.113 0.22807 33.922 33.77 33.998 -0.19131 -0.117 -0.00022785 NaN 30.225 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2521400 39299 8651 26261 26760 -0.007454651565240056 LYRLDMSNN 9 Unmodified _LYRLDMSNN_ 0 0 0 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.8272705078125 2 563.271498 1124.52844 1.4719 0.0008291 0.043411 2.4452E-05 1.5153 0.00085355 563.2716092547345 79.535 1.0142 73.359 72.879 73.893 -6.1757 110 59 2 0 0 0 0.209 1 52450 52450 7.2892 1.5288 1 18550000 39300 3897 26262 26761 46087 46087 -0.028839927851549874 LYRLERMF 8 Unmodified _LYRLERMF_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3038330078125 2 564.305144 1126.59573 0.29504 0.0001665 -1.2282 -0.00069308 -0.93316 -0.00052659 564.8059926443619 77.339 0.31644 77.339 77.045 77.362 0 20 14 2 0 0 0 8.7369 1 42857 42857 2.8892 0 1 828160 + 39301 21267 26263 26762 46088 46088 0.03750082216447481 LYRLERMF 8 Unmodified _LYRLERMF_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 564.305144 1126.59573 -0.58471 -0.00032995 -1.9302 -0.0010892 -2.5149 -0.0014192 564.3044574222047 77.665 0.18948 77.183 77.101 77.29 -0.4826 -0.078394 -0.00053047 NaN 2.8892 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 307430 + 39302 21267 26263 26762 0.03750082216447481 LYRLFERPAF 10 Unmodified _LYRLFERPAF_ 0 0 0 REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF REV__ENST00000358022.4_1_9:25677009-25677096:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3607177734375 2 656.364047 1310.71354 0.68635 0.0004505 -3.2748 -0.0021495 -2.5885 -0.001699 656.3631727902884 99.168 0.2347 92.992 92.94 93.174 -6.1757 19 13 3 0 0 0 0.093652 1 65978 65978 55.503 7.7541 1 32798000 + 39303 25864 26264 26763 46089 46089 0.07061358076748547 LYRLKFNEF 9 Unmodified _LYRLKFNEF_ 0 0 0 nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C nc|ENSG00000188042|P56559|ARL4C nc|ENSG00000188042|P56559|ARL4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8941040039062 3 410.560758 1228.66044 -0.38822 -0.00015939 0.41379 0.00016989 0.025569 1.0498E-05 410.56087958240977 55.627 0.26987 55.558 55.415 55.685 -0.068737 39 13 4 0 0 0 0.05447 3 30193 30173;30193;30291 47.594 16.326 1 65539000 39304 9621 26265 26764 46090;46091;46092 46091 0.05525980294078181 LYRLKFNEF 9 Unmodified _LYRLKFNEF_ 0 0 0 nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C nc|ENSG00000188042|P56559|ARL4C nc|ENSG00000188042|P56559|ARL4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8383178710938 2 615.337498 1228.66044 0.079991 4.9221E-05 0.65002 0.00039998 0.73001 0.0004492 615.3378906810376 55.6 0.14955 55.531 55.477 55.626 -0.068737 13 7 2 0 0 0 0.0087873 1 30221 30221 103.35 57.654 1 4688800 39305 9621 26265 26764 46093 46093 0.05525980294078181 LYRLKFNEF 9 Unmodified _LYRLKFNEF_ 0 0 0 nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C nc|ENSG00000188042|P56559|ARL4C nc|ENSG00000188042|P56559|ARL4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5597229003906 3 410.560758 1228.66044 0.31014 0.00012733 -0.62177 -0.00025527 -0.31163 -0.00012794 410.56051968467636 84.785 0.66497 78.609 78.172 78.837 -6.1757 62 38 3 0 0 0 0.25681 2 55760 55760;55897 18.373 9.9288 1 54133000 39306 9621 26265 26764 46094;46095 46094 0.05525980294078181 LYRLKGHK 8 Unmodified _LYRLKGHK_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3;WDR3|p.L349Cfs*8|1|0.42|ENSG00000065183|chr1:117942492-117942492|C/-|frameshift_variant ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.8143615722656 2 507.813993 1013.61343 0.53911 0.00027377 -1.4509 -0.00073677 -0.91175 -0.000463 507.81320651756954 48.387 0.23692 48.343 48.218 48.455 -0.04369 18 11 2 0 0 0 0.67481 1 26095 26095 19.439 4.8573 1 3674800 39307 894 26266 26765 46096 46096 0.10717165533606021 LYRLMFDLI 9 Unmodified _LYRLMFDLI_ 0 0 0 REV__ENSG00000184743|ENST00000398868|ATL3 REV__ENSG00000184743|ENST00000398868|ATL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 591.8299560546875 2 592.330827 1182.6471 0.52867 0.00031315 0.38861 0.00023019 0.91729 0.00054334 592.3310389256134 69.86 0.49837 63.685 63.281 63.78 -6.1757 39 26 2 0 0 0 0.17275 1 45483 45483 15.847 6.4641 1 69022000 + 39308 23441 26267 26766 46097 46097 0.06308406190487403 LYRLPQFD 8 Unmodified _LYRLPQFD_ 0 0 0 REV__ENSG00000126603|ENST00000433375|GLIS2 REV__ENSG00000126603|ENST00000433375|GLIS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2806396484375 2 526.282192 1050.54983 0.18815 9.9022E-05 0.24077 0.00012671 0.42893 0.00022574 526.2823547119029 93.359 0.74875 87.184 86.683 87.432 -6.1757 136 52 3 0 0 0 0.58902 1 61457 61457 26.884 3.7352 1 138470000 + 39309 19553 26268 26767 46098 46098 0.026577603058512977 LYRLQFNEF 9 Unmodified _LYRLQFNEF_ 0 0 0 ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A ENST00000404372.1_1_6:151256177-151256594:+|nuORF ENST00000404372.1_1_6:151256177-151256594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.3211669921875 2 615.319306 1228.62406 0.08076 4.9693E-05 0.82435 0.00050724 0.90511 0.00055693 615.3199633376024 69.476 0.39417 68.997 68.851 69.245 -0.47903 45 16 4 0 0 0 0.013041 2 37958 37958;38068 71.922 42.082 1 8614000 39310 3652 26269 26768 46099;46100 46099 0.018891033973659432 LYRLQFNEF 9 Unmodified _LYRLQFNEF_ 0 0 0 ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A ENST00000404372.1_1_6:151256177-151256594:+|nuORF ENST00000404372.1_1_6:151256177-151256594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3202514648438 2 615.319306 1228.62406 0.84795 0.00052176 0.013421 8.2584E-06 0.86138 0.00053002 615.3193014553665 68.962 0.371 68.987 68.77 69.141 0.025146 62 17 5 0 0 0 0.0071894 2 37836 37836;37947 111.29 78.982 1 59534000 39311 3652 26269 26768 46101;46102 46101 0.018891033973659432 LYRLQFNEF 9 Unmodified _LYRLQFNEF_ 0 0 0 ENST00000404372.1_1_6:151256177-151256594:+|nuORF;ENSG00000122644|ENST00000651779|ARL4A ENST00000404372.1_1_6:151256177-151256594:+|nuORF ENST00000404372.1_1_6:151256177-151256594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.320068359375 2 615.319306 1228.62406 0.71201 0.00043812 -0.43633 -0.00026848 0.27568 0.00016963 615.3191796872379 83.034 1.4693 76.859 76.25 77.72 -6.1757 169 80 3 0 0 0 0.0014543 6 54803 54268;54396;54528;54676;54803;54938 136.33 90.634 1 55116000 39312 3652 26269 26768 46103;46104;46105;46106;46107;46108 46107 0.018891033973659432 LYRLVVEVF 9 Unmodified _LYRLVVEVF_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;nc|ENSG00000205336|Q9Y653-5|ADGRG1;nc|ENSG00000205336|Q9Y653-4|ADGRG1 ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3384399414062 2 569.336967 1136.65938 NaN NaN NaN NaN NaN NaN NaN 80.446 1 80.504 80.004 81.004 0.057587 0 0 0 0.14 1 44471 44471 37.974 19.839 1 39313 10361 26270 26769 46109 46109 0.09651765925173095 LYRLWKKF 8 Unmodified _LYRLWKKF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2203369140625 3 385.234205 1152.68079 NaN NaN NaN NaN NaN NaN NaN 39.799 1 39.501 39.001 40.001 -0.29716 0 0 0 0.97444 1 21010 21010 1.6526 1.1981 1 39314 7704 26271 26770 46110 46110 0.11055195744529556 LYRNLVKCI 9 Unmodified _LYRNLVKCI_ 0 0 0 REV__nc|ENSG00000158488|P15812-13|CD1E REV__nc|ENSG00000158488|P15812-13|CD1E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.784423828125 2 561.328619 1120.64269 0.79738 0.00044759 -1.8095 -0.0010157 -1.0122 -0.00056815 561.3278280387896 50.936 0.20126 50.882 50.784 50.986 -0.053871 15 9 2 0 0 0 0.19613 1 27514 27514 7.9102 4.3137 1 1257400 + 39315 21435 26272 26771 46111 46111 0.08718941767574506 LYRPRMDWL 9 Unmodified _LYRPRMDWL_ 0 0 0 REV__ENST00000271375.6_1_1:168218796-168218895:+|nuORF REV__ENST00000271375.6_1_1:168218796-168218895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2211303710938 3 417.221859 1248.64375 0.14792 6.1715E-05 -2.3944 -0.00099901 -2.2465 -0.00093729 417.2208705779331 27.664 0.19527 27.692 27.554 27.749 0.028664 11 8 2 0 0 0 0.44883 1 14389 14389 10.151 0.6066 1 2584300 + 39316 25137 26273 26772 46112 46112 0.029371561364996523 LYRQNFQQMA 10 Unmodified _LYRQNFQQMA_ 0 0 0 REV__nc|ENSG00000123124|Q9H0M0-6|WWP1 REV__nc|ENSG00000123124|Q9H0M0-6|WWP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5490417480469 3 433.548523 1297.62374 0.086827 3.7644E-05 0.81577 0.00035368 0.9026 0.00039132 433.5487745429816 30.207 1.1919 30.237 29.712 30.904 0.030106 106 50 3 0 0 0 0.66652 2 15670 15670;15768 6.6304 1.2948 1 3592500 + 39317 19370 26274 26773 46113;46114 46113 -0.013166395941425435 LYRQRIVTPV 10 Unmodified _LYRQRIVTPV_ 0 0 0 REV__ENSG00000079313|ENST00000170168|REXO1 REV__ENSG00000079313|ENST00000170168|REXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5877380371094 3 415.587307 1243.74009 -0.17374 -7.2203E-05 1.347 0.00055978 1.1732 0.00048757 415.58795214098353 30.074 0.37902 30.104 29.921 30.3 0.030106 49 15 5 0 0 0 0.71981 1 15796 15796 0.69767 0 1 10016000 + 39318 17645 26275 26774 46115 46115 0.12797046968080394 LYRQYFEEI 9 Unmodified _LYRQYFEEI_ 0 0 0 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.817626953125 2 630.816596 1259.61864 -0.33117 -0.00020891 -0.73477 -0.0004635 -1.0659 -0.00067241 630.8158251455659 56.106 0.1745 56.106 55.987 56.162 0 18 7 3 0 0 0 0.07087 1 31181 31181 39.95 19.535 1 1447500 39319 3753 26276 26775 46116 46116 -0.0007862018510422786 LYRQYFEEI 9 Unmodified _LYRQYFEEI_ 0 0 0 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8170166015625 2 630.816596 1259.61864 NaN NaN NaN NaN NaN NaN NaN 56.637 1 56.151 55.651 56.651 -0.48554 0 0 0 0.098496 1 30764 30764 43.772 19.752 1 39320 3753 26276 26775 46117 46117 -0.0007862018510422786 LYRQYFEEI 9 Unmodified _LYRQYFEEI_ 0 0 0 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 630.816596 1259.61864 1.4489 0.00091397 -1.9755 -0.0012462 -0.52664 -0.00033222 630.8152943352386 62.468 0.19146 56.292 56.23 56.422 -6.1757 0.09307 -0.00085021 NaN 39.95 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 5884400 39321 3753 26276 26775 -0.0007862018510422786 LYRRYRGF 8 Unmodified _LYRRYRGF_ 0 0 0 REV__ENSG00000133059|ENST00000367162|DSTYK REV__ENSG00000133059|ENST00000367162|DSTYK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.81640625 2 565.814525 1129.6145 0.56518 0.00031979 2.2837 0.0012922 2.8489 0.001612 565.8159826556774 94.157 0.25123 93.737 93.657 93.908 -0.42043 24 15 3 0 0 0 0.79887 1 51490 51490 5.7604 0 1 678190 + 39322 19903 26277 26776 46118 46118 0.05487379902524481 LYRSNTSQLAF 11 Unmodified _LYRSNTSQLAF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2293395996094 3 433.894577 1298.6619 0.3799 0.00016484 0.29 0.00012583 0.6699 0.00029067 433.89466573770363 30.925 0.20091 30.822 30.691 30.891 -0.10269 20 7 3 0 0 0 0.61596 2 16035 16035;16078 10.527 3.904 1 4353700 39323 2340 26278 26777 46119;46120 46119 0.02451569592199121 LYRSNTSQLAF 11 Unmodified _LYRSNTSQLAF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.895751953125 3 433.894577 1298.6619 0.043301 1.8788E-05 0.94732 0.00041104 0.99062 0.00042982 433.89506644606655 30.687 0.29304 30.717 30.563 30.856 0.030106 41 12 4 0 0 0 0.61596 1 16024 16024 10.527 3.904 1 25038000 39324 2340 26278 26777 46121 46121 0.02451569592199121 LYRSNTSQLAF 11 Unmodified _LYRSNTSQLAF_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.8939819335938 3 433.894577 1298.6619 1.0506 0.00045585 0.89922 0.00039016 1.9498 0.00084602 433.89519965940116 34.793 0.28755 30.698 30.581 30.869 -4.0951 43 16 3 0 0 0 0.31264 2 20060 20060;20199 26.121 14.603 1 11189000 39325 2340 26278 26777 46122;46123 46122 0.02451569592199121 LYRTPLQAYF 10 Unmodified _LYRTPLQAYF_ 0 0 0 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.346923828125 2 636.342781 1270.67101 2.1547 0.0013711 4.0843 0.002599 6.239 0.0039701 636.3454058230874 100.1 0.11179 100.06 99.962 100.07 -0.036301 8 3 3 0 0 0 0.60623 1 55599 55599 10.824 0.024421 1 3108700 39326 16599 26279 26778 46124 46124 0.04649962948519715 LYRTVETYL 9 Unmodified _LYRTVETYL_ 0 0 0 REV__ENSG00000203879|ENST00000447750|GDI1;REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF REV__ENST00000491154.1_1_X:153666748-153668487:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.2089538574219 3 386.544885 1156.61282 0.75886 0.00029333 -1.7647 -0.00068215 -1.0059 -0.00038881 386.5443970315498 76.714 0.17003 70.538 70.411 70.581 -6.1757 13 8 2 0 0 0 0.20358 1 50107 50107 6.6304 1.9145 1 17929000 + 39327 24126;27889 26280 26779 46125 46125 0.04078281303259246 LYRVLSVTGI 10 Unmodified _LYRVLSVTGI_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8397216796875 2 560.839874 1119.66519 0.88109 0.00049415 0.32917 0.00018461 1.2103 0.00067876 560.839826099242 67.4 2.1078 61.224 59.692 61.799 -6.1757 214 120 3 0 0 0 0.015688 1 43993 43993 79.596 9.2643 1 56137000 39328 9902 26281 26780 46126 46126 0.11014864436856442 LYRVNDKSENA 11 Unmodified _LYRVNDKSENA_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MSMS AL20221201_MKP_PDAC_01 4 655.282470703125 2 654.830766 1307.64698 NaN NaN NaN NaN NaN NaN NaN 93.827 1 87.651 87.151 88.151 -6.1757 0 0 0 0.61053 1 62132 62132 20.415 5.5763 1 + 39329 19463 26282 26781 46127 46127 0.005460777241978576 LYSAVIVYDE 10 Unmodified _LYSAVIVYDE_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2016296386719 3 391.200895 1170.58086 -0.25296 -9.8959E-05 0.55393 0.0002167 0.30097 0.00011774 391.20108000915894 36.004 0.25835 36.029 35.885 36.144 0.024967 28 11 3 0 0 0 0.62068 1 19029 19029 8.9762 1.0308 1 5289300 39330 3548 26283 26782 46128 46128 0.002388688294331587 LYSAWATP 8 Unmodified _LYSAWATP_ 0 0 0 REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF REV__ENST00000257336.5_1_13:103459816-103460068:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.7290649414062 2 454.729261 907.443968 0.40957 0.00018624 -0.36795 -0.00016732 0.041621 1.8926E-05 454.72909643141367 84.075 0.36021 83.575 83.392 83.753 -0.49962 27 15 2 0 0 0 0.78849 1 45967 45967 9.3474 9.3474 1 1169300 + 39331 24928 26284 26783 46129 46129 -0.013455755396307723 LYSCSYKLL 9 Carbamidomethyl (C) _LYSC(Carbamidomethyl (C))SYKLL_ LYSC(1)SYKLL LYSC(48)SYKLL 0 1 0 REV__ENST00000545314.5_1_1:65696889-65697039:+|nuORF REV__ENST00000545314.5_1_1:65696889-65697039:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7978515625 2 573.796817 1145.57908 0.56672 0.00032518 0.44153 0.00025335 1.0082 0.00057853 573.7966225045585 55.365 0.77184 54.887 54.528 55.3 -0.47798 77 36 4 0 0 0 0.042911 1 29975 29975 48.346 12.219 1 14040000 + 39332 28647 26285 26784 46130 46130 1061 0.012115365398130962 LYSCSYKLL 9 Carbamidomethyl (C) _LYSC(Carbamidomethyl (C))SYKLL_ LYSC(1)SYKLL LYSC(64)SYKLL 0 1 0 REV__ENST00000545314.5_1_1:65696889-65697039:+|nuORF REV__ENST00000545314.5_1_1:65696889-65697039:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7966918945312 2 573.796817 1145.57908 1.1481 0.00065875 -0.97276 -0.00055817 0.17529 0.00010058 573.7961986954025 60.552 0.5828 54.404 54.161 54.744 -6.1478 64 30 3 0 0 0 0.019303 2 38990 38990;39114 64.236 20.378 1 36693000 + 39333 28647 26285 26784 46131;46132 46131 1061 0.012115365398130962 LYSDDTVESY 10 Unmodified _LYSDDTVESY_ 0 0 0 ENSG00000186628|ENST00000334574|FSD2;nc|ENSG00000186628|A1L4K1-2|FSD2 ENSG00000186628|ENST00000334574|FSD2 ENSG00000186628|ENST00000334574|FSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2576904296875 2 596.256234 1190.49791 0.45464 0.00027108 0.35319 0.00021059 0.80783 0.00048168 596.2565390073552 60.447 0.25663 60.447 60.368 60.625 0 24 11 3 0 0 0 0.68719 1 33752 33752 4.3292 0.38484 1 981530 39334 9488 26286 26785 46133 46133 -0.08971492689215665 LYSDIGHLL 9 Unmodified _LYSDIGHLL_ 0 0 0 nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3 nc|ENSG00000149212|P58005-4|SESN3 nc|ENSG00000149212|P58005-4|SESN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7819213867188 2 515.782025 1029.5495 0.2333 0.00012033 -0.41615 -0.00021464 -0.18285 -9.431E-05 515.7824531662744 66.902 0.23146 66.419 66.314 66.546 -0.48323 19 10 2 0 0 0 0.045537 1 36568 36568 46.921 8.7697 1 1036900 39335 5991 26287 26786 46134 46134 0.035903405860153725 LYSDRDRTF 9 Unmodified _LYSDRDRTF_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B;nc|ENSG00000259956|Q8NDT2-2|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.791259765625 2 586.78837 1171.56219 0.13781 8.0863E-05 2.321 0.0013619 2.4588 0.0014428 586.7907272979379 58.042 0.60952 52.015 51.717 52.327 -6.0275 85 33 4 0 0 0 0.23158 1 37278 37278 20.454 3.5113 1 159780000 39336 10825 26288 26787 46135 46135 -0.016732480217797274 LYSDRHYDL 9 Unmodified _LYSDRHYDL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.5242614746094 3 394.524372 1180.55129 -0.3127 -0.00012337 0.75126 0.00029639 0.43856 0.00017302 394.52463006917566 31.727 0.24004 31.727 31.6 31.84 0 32 11 4 0 0 0 0.15471 1 16513 16513 32.037 32.037 1 9180700 39337 2734 26289 26788 46136 46136 -0.03176650396039804 LYSDRHYDL 9 Unmodified _LYSDRHYDL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.282470703125 2 591.28292 1180.55129 NaN NaN NaN NaN NaN NaN NaN 31.745 1 31.745 31.245 32.245 0 0 0 0 0.43047 1 16549 16549 18.373 2.5259 1 39338 2734 26289 26788 46137 46137 -0.03176650396039804 LYSEALCW 8 Unmodified _LYSEALCW_ 0 0 0 ENST00000377897.8_1_11:62574818-62575010:-|nuORF ENST00000377897.8_1_11:62574818-62575010:-|nuORF ENST00000377897.8_1_11:62574818-62575010:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.7281188964844 2 492.728403 983.442254 NaN NaN NaN NaN NaN NaN NaN 93.207 1 87.032 86.532 87.532 -6.1757 0 0 0 0.73801 1 61681 61681 26.341 3.1929 1 39339 12535 26290 26789 46138 46138 -0.050129526198816166 LYSEALCW 8 Unmodified _LYSEALCW_ 0 0 0 ENST00000377897.8_1_11:62574818-62575010:-|nuORF ENST00000377897.8_1_11:62574818-62575010:-|nuORF ENST00000377897.8_1_11:62574818-62575010:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.7276916503906 2 492.728403 983.442254 NaN NaN NaN NaN NaN NaN NaN 93.467 1 87.292 86.792 87.792 -6.1757 0 0 0 0.85111 1 61864 61864 20.871 0 1 39340 12535 26290 26789 46139 46139 -0.050129526198816166 LYSEEEDE 8 Unmodified _LYSEEEDE_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2016906738281 2 507.200927 1012.3873 1.111 0.0005635 0.091007 4.6159E-05 1.202 0.00060966 507.20093117088777 86.375 0.75771 80.2 79.81 80.567 -6.1757 71 40 2 0 0 0 0.77907 1 57089 57089 10.183 0.10947 1 11277000 39341 8841 26291 26790 46140 46140 -0.11839712677465286 LYSELFTLL 9 Unmodified _LYSELFTLL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8084106445312 2 549.807708 1097.60086 0.65597 0.00036066 0.13666 7.5135E-05 0.79263 0.00043579 549.8078296891255 101.71 0.12109 95.535 95.461 95.582 -6.1757 17 6 4 0 0 0 0.03327 1 68253 68253 53.576 23.351 1 180600000 39342 9835 26292 26791 46141 46141 0.05596664560061981 LYSELKVQF 9 Unmodified _LYSELKVQF_ 0 0 0 REV__nc|ENSG00000112499|O15244-2|SLC22A2 REV__nc|ENSG00000112499|O15244-2|SLC22A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3075561523438 2 563.810782 1125.60701 1.2887 0.00072658 -1.151 -0.00064896 0.13767 7.7619E-05 563.8098707444366 95.182 0.65691 89.006 88.625 89.282 -6.1757 68 36 3 0 0 0 0.078417 1 62850 62850 38.151 9.6643 1 64531000 + 39343 29575 26293 26792 46142 46142 0.04923182791549152 LYSEQRQPF 9 Unmodified _LYSEQRQPF_ 0 0 0 REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF REV__ENST00000462381.1_1_7:73151257-73151715:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7960815429688 2 584.293288 1166.57202 1.0208 0.00059644 0.15907 9.2946E-05 1.1799 0.00068939 584.7946391409351 60.554 0.58368 54.406 54.083 54.667 -6.1478 73 30 3 0 0 0 0.14 1 39115 39115 29.082 4.0906 1 56307000 + 39344 18487 26294 26793 46143 46143 -0.004600600163939816 LYSESGVLLR 10 Unmodified _LYSESGVLLR_ 0 0 0 REV__ENST00000436105.1_1_7:43550843-43551092:-|nuORF REV__ENST00000436105.1_1_7:43550843-43551092:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.817626953125 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 56.279 1 55.793 55.293 56.293 -0.48554 0 0 0 0.68942 1 30553 30553 17.113 1.2657 1 + 39345 27027 26295 26794 46144 46144 0.06133683677512636 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7706909179688 2 554.769114 1107.52368 1.3139 0.00072893 -0.049671 -2.7556E-05 1.2643 0.00070137 554.7689853447752 63.813 0.39294 57.637 57.506 57.899 -6.1757 55 21 3 0 0 0 0.010877 2 41204 41204;41334 77.984 47.348 1 77334000 39346 5511 26296 26795 46145;46146 46145 -0.025785536562807465 LYSEVDVHF 9 Unmodified _LYSEVDVHF_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.769114 1107.52368 0.9271 0.00051433 -4.0311 -0.0022363 -3.104 -0.001722 554.7663347214828 57.546 0.11612 57.48 57.397 57.513 -0.066036 -0.07851 -0.0043518 NaN 77.984 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1004500 39347 5511 26296 26795 -0.025785536562807465 LYSEVKEVL 9 Unmodified _LYSEVKEVL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.3037719726562 2 540.30279 1078.59103 0.51557 0.00027856 -0.96756 -0.00052278 -0.45199 -0.00024421 540.302196247274 49.233 0.20568 49.233 49.128 49.333 0 18 8 3 0 0 0 0.036857 1 27077 27077 51.63 3.8811 1 6081100 39348 2488 26297 26796 46147 46147 0.05487476554662862 LYSEVSHLL 9 Unmodified _LYSEVSHLL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7879638671875 2 530.787307 1059.56006 0.46786 0.00024833 -0.59849 -0.00031767 -0.13063 -6.9337E-05 530.7872524709734 59.232 0.43562 59.232 58.965 59.4 0 50 18 3 0 0 0 0.091924 1 32917 32917 46.021 15.796 1 6323800 39349 7181 26298 26797 46148 46148 0.032663232404502196 LYSEVSHLL 9 Unmodified _LYSEVSHLL_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7880859375 2 530.787307 1059.56006 0.25397 0.00013481 -0.062961 -3.3419E-05 0.19101 0.00010139 530.787391685856 59.587 0.49366 59.096 58.898 59.392 -0.49079 49 23 3 0 0 0 0.0082475 2 32371 32371;32470 117.6 57.209 1 14686000 39350 7181 26298 26797 46149;46150 46149 0.032663232404502196 LYSFAGRG 8 Unmodified _LYSFAGRG_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7269897460938 2 435.727052 869.439552 0.35863 0.00015627 0.58267 0.00025389 0.9413 0.00041015 435.7271909284136 24.152 0.3582 21.325 21.091 21.449 -2.8273 44 19 3 0 0 0 0.75262 1 13036 13036 12.532 0 1 10742000 + 39351 17510 26299 26798 46151 46151 -0.00039039962518927496 LYSFGGGLVQL 11 Unmodified _LYSFGGGLVQL_ 0 0 0 REV__ENSG00000116260|ENST00000367602|QSOX1 REV__ENSG00000116260|ENST00000367602|QSOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2136535644531 3 385.213246 1152.61791 1.8426 0.00070978 -1.6204 -0.0006242 0.22218 8.5586E-05 385.2125730066123 64.265 0.37596 58.089 57.955 58.331 -6.1757 32 19 2 0 0 0 0.37677 1 41693 41693 13.519 0 1 9467200 + 39352 19034 26300 26799 46152 46152 0.04770585165874763 LYSFYPLLLF 10 Unmodified _LYSFYPLLLF_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 MSMS AL20221201_MKP_PDAC_01 4 638.3554077148438 2 638.354825 1274.6951 NaN NaN NaN NaN NaN NaN NaN 73.772 1 67.597 67.097 68.097 -6.1757 0 0 0 0.81521 1 48234 48234 11.64 0.81637 1 + 39353 29808 26301 26800 46153 46153 0.06873803382177357 LYSGELAG 8 Unmodified _LYSGELAG_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2036437988281 2 405.205618 808.396684 -0.53601 -0.0002172 1.0704 0.00043373 0.53438 0.00021653 405.2058848973101 18.505 0.3326 18.528 18.287 18.619 0.023106 97 65 2 0 0 0 0.80232 1 9162 9162 5.2307 0 1 505990 39354 16507 26302 26801 46154 46154 -0.015178548106064227 LYSHGVPRTL 10 Unmodified _LYSHGVPRTL_ 0 0 0 nc|ENSG00000089225|Q99593-3|TBX5;ENSG00000089225|ENST00000405440|TBX5 nc|ENSG00000089225|Q99593-3|TBX5 nc|ENSG00000089225|Q99593-3|TBX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5486450195312 3 381.548741 1141.62439 -0.45682 -0.0001743 0.61378 0.00023419 0.15696 5.9887E-05 381.54898200523013 20.407 0.177 20.407 20.296 20.473 0 45 29 2 0 0 0 0.6606 1 10248 10248 3.8763 0 1 4934700 39355 1523 26303 26802 46155 46155 0.05924523117255376 LYSHINQTL 9 Unmodified _LYSHINQTL_ 0 0 0 nc|ENSG00000182518|Q5XKR9-4|VCF2;nc|ENSG00000182518|Q5XKR9-6|VCF2;ENSG00000182518|ENST00000685693|FAM104B;nc|ENSG00000182518|Q5XKR9-3|VCF2 nc|ENSG00000182518|Q5XKR9-4|VCF2 nc|ENSG00000182518|Q5XKR9-4|VCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7908325195312 2 544.790381 1087.56621 0.62339 0.00033962 -0.038317 -2.0875E-05 0.58507 0.00031874 544.7903439739656 43.077 0.29331 38.313 38.083 38.377 -4.7648 28 18 2 0 0 0 0.036857 1 26106 26106 51.63 13.656 1 14456000 39356 9062 26304 26803 46156 46156 0.025928414719601278 LYSHLVDYF 9 Unmodified _LYSHLVDYF_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;GNA11|p.E294A|1|0.18|ENSG00000088256|chr19:3119351-3119351|A/C|missense_variant ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7846069335938 2 578.787307 1155.56006 0.6822 0.00039485 -1.0694 -0.00061895 -0.38718 -0.0002241 578.785744539125 68.095 0.29176 67.613 67.411 67.703 -0.48218 38 13 4 0 0 0 0.040683 1 37155 37155 64.236 28.192 1 19245000 39357 1481 26305 26804 46157 46157 -0.01149676759587237 LYSHLVDYF 9 Unmodified _LYSHLVDYF_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;GNA11|p.E294A|1|0.18|ENSG00000088256|chr19:3119351-3119351|A/C|missense_variant ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.78759765625 2 578.787307 1155.56006 0.47901 0.00027725 0.24459 0.00014156 0.7236 0.00041881 578.7873886622175 85.629 0.72923 79.454 79.121 79.85 -6.1757 103 42 3 0 0 0 0.0082475 4 56525 56256;56386;56525;56673 104.8 60.392 1 40520000 39358 1481 26305 26804 46158;46159;46160;46161 46160 -0.01149676759587237 LYSHLVDYF 9 Unmodified _LYSHLVDYF_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF;GNA11|p.E294A|1|0.18|ENSG00000088256|chr19:3119351-3119351|A/C|missense_variant ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MSMS AL20221201_MKP_PDAC_01 4 578.7870483398438 2 578.787307 1155.56006 NaN NaN NaN NaN NaN NaN NaN 85.23 1 79.054 78.554 79.554 -6.1757 0 0 0 0.098496 1 56119 56119 57.471 27.247 1 39359 1481 26305 26804 46162 46162 -0.01149676759587237 LYSHTYVSYD 10 Unmodified _LYSHTYVSYD_ 0 0 0 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5252075195312 3 416.524149 1246.55062 0.9394 0.00039128 0.59093 0.00024614 1.5303 0.00063742 416.858776802225 82.643 0.3653 82.705 82.529 82.894 0.062004 32 13 3 0 0 0 0.60623 1 45709 45709 6.1918 0.78914 1 6254300 + 39360 23737 26306 26805 46163 46163 -0.06279489835765162 LYSHTYVSYD 10 Unmodified _LYSHTYVSYD_ 0 0 0 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 REV__nc|ENSG00000188833|Q5MY95-2|ENTPD8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 416.524149 1246.55062 0.9394 0.00039128 0.59093 0.00024614 1.5303 0.00063742 416.858776802225 82.643 0.3653 82.705 82.529 82.894 0.062004 -0.030838 4.7139E-05 NaN 6.1918 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6254300 + 39361 23737 26306 26805 -0.06279489835765162 LYSIAQPFLK 10 Unmodified _LYSIAQPFLK_ 0 0 0 REV__nc|ENSG00000185621|Q96KR4-2|LMLN REV__nc|ENSG00000185621|Q96KR4-2|LMLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3438720703125 2 590.342249 1178.66995 0.30749 0.00018153 1.0527 0.00062145 1.3602 0.00080298 590.3428168414598 63.081 0.33321 63.06 62.888 63.222 -0.021614 54 16 4 0 0 0 0.54684 1 34452 34452 13.906 3.0821 1 60782000 + 39362 23513 26307 26806 46164 46164 0.08775748579614628 LYSINYLHF 9 Unmodified _LYSINYLHF_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;nc|ENSG00000127663|O94953-2|KDM4B;ENSG00000255855|ENST00000545950|KDM4F;ENSG00000235268|ENST00000450979|KDM4E ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000127663|O94953|KDM4B;ENSG00000255855|ENST00000545950|KDM4F ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3033447265625 2 585.303124 1168.5917 0.41009 0.00024003 1.1312 0.00066212 1.5413 0.00090215 585.3037976076872 77.13 0.23885 77.18 77.033 77.272 0.050102 21 9 3 0 0 0 0.031062 1 42581 42581 54.774 22.468 1 1817900 39363 929;4024;10796 26308 26807 46165 46165 0.014143159943841965 LYSKIEALL 9 Unmodified _LYSKIEALL_ 0 0 0 ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.3164672851562 2 525.3157 1048.61685 0.55208 0.00029002 -0.41793 -0.00021954 0.13415 7.0471E-05 525.3154125235452 67.933 0.28299 67.451 67.255 67.538 -0.48219 20 12 2 0 0 0 0.07087 1 37112 37112 39.95 13.066 1 1990800 39364 3396 26309 26808 46166 46166 0.09448370796940253 LYSKIEALL 9 Unmodified _LYSKIEALL_ 0 0 0 ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1;ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 ENSG00000118855|ENST00000415822|MFSD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 525.3157 1048.61685 0.29893 0.00015703 -0.0073192 -3.8449E-06 0.29161 0.00015319 525.3156855227518 67.397 0.21704 67.415 67.297 67.514 0.018036 -0.018106 0.00026995 NaN 39.95 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1918000 39365 3396 26309 26808 0.09448370796940253 LYSKRFAVF 9 Unmodified _LYSKRFAVF_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A;ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000171017|ENST00000306708|LRRC8E ENSG00000136802|ENST00000372600|LRRC8A;ENSG00000171488|ENST00000370454|LRRC8C;ENSG00000171017|ENST00000306708|LRRC8E ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5509033203125 3 377.550082 1129.62842 0.40031 0.00015114 1.2545 0.00047364 1.6548 0.00062478 377.55062554177607 48.126 0.29642 48.088 47.907 48.203 -0.038643 32 14 3 0 0 0 0.32235 1 25926 25926 16.149 3.9084 1 5453800 39366 4855;8107;8055 26310 26809 46167 46167 0.06878612610944401 LYSKTLDFP 9 Unmodified _LYSKTLDFP_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2919311523438 2 542.289682 1082.56481 0.53711 0.00029127 3.9242 0.002128 4.4613 0.0024193 542.291549172408 71.855 0.18661 71.894 71.768 71.954 0.039024 17 8 3 0 0 0 0.32871 1 39563 39563 15.847 0 1 2069900 + 39367 22822;29793 26311 26810 46168 46168 0.026832073831883463 LYSKWIPPQY 10 Unmodified _LYSKWIPPQY_ 0 0 0 REV__nc|ENSG00000106069|P52757-8|CHN2 REV__nc|ENSG00000106069|P52757-8|CHN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.8464965820312 2 647.845156 1293.67576 1.05 0.00068024 1.7894 0.0011592 2.8394 0.0018395 647.8460995190194 60.736 0.58452 54.588 54.412 54.996 -6.1478 51 31 2 0 0 0 0.35903 2 39075 39075;39206 24.021 4.6586 1 40034000 + 39368 18486 26312 26811 46169;46170 46169 0.04066847091280579 LYSKWIPPQY 10 Unmodified _LYSKWIPPQY_ 0 0 0 REV__nc|ENSG00000106069|P52757-8|CHN2 REV__nc|ENSG00000106069|P52757-8|CHN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 647.845156 1293.67576 0.55778 0.00036136 2.3032 0.0014921 2.861 0.0018535 647.8464452496696 54.823 0.18052 54.756 54.644 54.824 -0.066936 0.083868 0.00055944 NaN 24.021 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1725700 + 39369 18486 26312 26811 0.04066847091280579 LYSKWIPPQY 10 Unmodified _LYSKWIPPQY_ 0 0 0 REV__nc|ENSG00000106069|P52757-8|CHN2 REV__nc|ENSG00000106069|P52757-8|CHN2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 647.845156 1293.67576 1.05 0.00068024 1.7894 0.0011592 2.8394 0.0018395 647.8460995190194 60.736 0.58452 54.588 54.412 54.996 -6.1478 -0.083868 -0.00010635 NaN 24.021 51 31 2 NaN NaN NaN NaN 0 NaN NaN 0 40034000 + 39370 18486 26312 26811 0.04066847091280579 LYSLFLYMP 9 Unmodified _LYSLFLYMP_ 0 0 0 REV__nc|ENSG00000260811|A6NMZ5|OR4C45 REV__nc|ENSG00000260811|A6NMZ5|OR4C45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2013854980469 3 382.868311 1145.5831 NaN NaN NaN NaN NaN NaN NaN 22.803 1 22.803 22.303 23.303 0 0 0 0 0.82396 1 11606 11606 5.2969 0.76802 1 + 39371 29992 26313 26812 46171 46171 0.016136260335315455 LYSLGRNAAL 10 Unmodified _LYSLGRNAAL_ 0 0 0 ENSG00000179142|ENST00000323110|CYP11B2 ENSG00000179142|ENST00000323110|CYP11B2 ENSG00000179142|ENST00000323110|CYP11B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8735656738281 3 359.873224 1076.59784 1.2449 0.00044802 -0.56216 -0.00020231 0.68279 0.00024572 360.20720761546545 22.449 0.23467 19.67 19.519 19.753 -2.7784 20 12 2 0 0 0 0.42068 1 12073 12073 12.873 1.3779 1 4276700 39372 8815 26314 26813 46172 46172 0.06260834225895451 LYSLKQYFL 9 Unmodified _LYSLKQYFL_ 0 0 0 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8292236328125 2 587.828975 1173.6434 0.9987 0.00058706 3.1329 0.0018416 4.1316 0.0024287 588.3344303468564 94.693 0.32597 88.517 88.299 88.625 -6.1757 29 18 2 0 0 0 0.015688 1 62614 62614 85.272 36.926 1 12152000 39373 5629 26315 26814 46173 46173 0.06352059688288136 LYSNIAFNL 9 Unmodified _LYSNIAFNL_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS AL20221201_MKP_PDAC_01 4 527.7831420898438 2 527.782025 1053.5495 NaN NaN NaN NaN NaN NaN NaN 89.291 1 83.115 82.615 83.615 -6.1757 0 0 0 0.032808 1 58938 58938 65.235 17.486 1 39374 4712 26316 26815 46174 46174 0.02486340585983271 LYSNIAFNL 9 Unmodified _LYSNIAFNL_ 0 0 0 ENSG00000135476|ENST00000257934|ESPL1;nc|ENSG00000135476|Q14674-2|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 ENSG00000135476|ENST00000257934|ESPL1 MSMS AL20221201_MKP_PDAC_01 4 527.781005859375 2 527.782025 1053.5495 NaN NaN NaN NaN NaN NaN NaN 89.49 1 83.314 82.814 83.814 -6.1757 0 0 0 0.047623 1 59075 59075 58.679 12.658 1 39375 4712 26316 26815 46175 46175 0.02486340585983271 LYSNLQHLKW 10 Unmodified _LYSNLQHLKW_ 0 0 0 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-2|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.572265625 3 434.571545 1300.69281 0.75038 0.00032609 -0.89586 -0.00038932 -0.14548 -6.3221E-05 434.57125504922743 52.261 0.26215 52.202 52.047 52.309 -0.058918 47 12 5 0 0 0 0.22922 1 28263 28263 31.636 24.159 1 21378000 39376 4697 26317 26816 46176 46176 0.05448767697066614 LYSPGLFPAF 10 Unmodified _LYSPGLFPAF_ 0 0 0 REV__ENSG00000229544|ENST00000451024|NKX1-2 REV__ENSG00000229544|ENST00000451024|NKX1-2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.296142578125 2 556.294768 1110.57498 0.62576 0.00034811 1.0234 0.00056933 1.6492 0.00091744 556.2956453133061 44.067 0.54596 39.303 39.002 39.548 -4.7648 94 36 3 0 0 0 0.6606 1 26839 26839 7.2892 7.2892 1 102880000 + 39377 24402 26318 26817 46177 46177 0.02411815108416704 LYSPIRSKL 9 Unmodified _LYSPIRSKL_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.554443359375 3 359.553603 1075.63898 1.3701 0.00049262 -0.91416 -0.00032869 0.45594 0.00016394 359.55326906175543 42.208 0.25295 37.523 37.44 37.693 -4.6846 23 15 2 0 0 0 0.053952 1 25501 25501 43.982 20.192 1 11588000 39378 1757 26319 26818 46178 46178 0.10418595265377917 LYSPLAEQF 9 Unmodified _LYSPLAEQF_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2739868164062 2 534.274032 1066.53351 -0.012798 -6.8377E-06 0.82134 0.00043882 0.80854 0.00043198 534.2743592875838 71.528 0.26673 71.528 71.405 71.672 0 20 11 2 0 0 0 0.10734 1 39844 39844 32.305 19.774 1 1222400 39379 2105 26320 26819 46179 46179 0.0029063434908493946 LYSPLAEQF 9 Unmodified _LYSPLAEQF_ 0 0 0 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 ENSG00000103148|ENST00000611875|NPRL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2753295898438 2 534.274032 1066.53351 1.2583 0.00067228 0.58723 0.00031374 1.8455 0.00098602 534.2742804212851 79.565 0.37289 73.389 73.304 73.677 -6.1757 42 22 2 0 0 0 0.07916 1 52160 52160 37.974 22.127 1 21010000 39380 2105 26320 26819 46180 46180 0.0029063434908493946 LYSPPQDGSY 10 Unmodified _LYSPPQDGSY_ 0 0 0 REV__ENST00000524655.5_1_11:128842326-128843235:-|nuORF REV__ENST00000524655.5_1_11:128842326-128843235:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7587280273438 2 563.756204 1125.49785 1.3605 0.00076697 2.7437 0.0015468 4.1042 0.0023137 563.7577952866484 89.328 0.85551 83.152 82.796 83.651 -6.1757 146 47 4 0 0 0 0.5905 1 59171 59171 11.64 3.047 1 106640000 + 39381 20024 26321 26820 46181 46181 -0.05987447898564824 LYSQLQVFF 9 Unmodified _LYSQLQVFF_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000492562.5_1_X:48334751-48340044:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8069458007812 2 572.8055 1143.59645 2.214 0.0012682 -1.9397 -0.0011111 0.27429 0.00015711 573.3055506017268 95.841 0.37866 95.845 95.651 96.03 0.0041504 31 13 3 0 0 0 0.40476 1 53296 53296 18.135 5.6034 1 2093500 39382 981 26322 26821 46182 46182 0.030392001371410515 LYSQQLMRQYH 11 Unmodified _LYSQQLMRQYH_ 0 0 0 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 ENSG00000181378|ENST00000341552|CFAP65 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 733.863037109375 2 733.864086 1465.71362 NaN NaN NaN NaN NaN NaN NaN 79.975 1 79.486 78.986 79.986 -0.48932 0 0 0 0.94002 1 43805 43805 2.4985 1.3051 1 39383 8966 26323 26822 46183 46183 -0.0006100998552938108 LYSRQLYVL 9 Unmodified _LYSRQLYVL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENSG00000182179|ENST00000333486|UBA7 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8323364257812 2 577.832049 1153.64954 0.38693 0.00022358 1.0882 0.0006288 1.4751 0.00085238 577.8325635035154 59.369 0.19421 58.878 58.792 58.987 -0.49079 12 8 2 0 0 0 0.43305 1 32327 32327 15.248 7.9593 1 785320 39384 9027;4284 26324 26823 46184 46184 0.07886577919794036 LYSRQLYVL 9 Unmodified _LYSRQLYVL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENSG00000182179|ENST00000333486|UBA7 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8324584960938 2 577.832049 1153.64954 0.7031 0.00040627 -0.13034 -7.5314E-05 0.57276 0.00033096 577.8319833182752 59.047 0.32547 58.986 58.801 59.127 -0.060722 51 15 4 0 0 0 0.024507 2 32213 32110;32213 63.961 34.12 1 35525000 39385 9027;4284 26324 26823 46185;46186 46186 0.07886577919794036 LYSRSSFSM 9 Unmodified _LYSRSSFSM_ 0 0 0 REV__ENSG00000182606|ENST00000327628|TRAK1 REV__ENSG00000182606|ENST00000327628|TRAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.254638671875 2 539.255317 1076.49608 -0.13704 -7.3899E-05 -2.0572 -0.0011094 -2.1942 -0.0011833 539.2541803812966 37.331 0.20189 37.353 37.24 37.442 0.021545 21 8 3 0 0 0 0.07916 1 19801 19801 37.974 14.826 1 3126700 + 39386 23283 26325 26824 46187 46187 -0.03910780188175522 LYSRSSFSM 9 Unmodified _LYSRSSFSM_ 0 0 0 REV__ENSG00000182606|ENST00000327628|TRAK1 REV__ENSG00000182606|ENST00000327628|TRAK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.255317 1076.49608 -0.1875 -0.00010111 -4.1527 -0.0022394 -4.3402 -0.0023405 539.2535943605468 37.691 0.13034 37.42 37.375 37.506 -0.27133 0.033571 -0.002038 NaN 37.974 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 901700 + 39387 23283 26325 26824 -0.03910780188175522 LYSRSSFSM 9 Unmodified _LYSRSSFSM_ 0 0 0 REV__ENSG00000182606|ENST00000327628|TRAK1 REV__ENSG00000182606|ENST00000327628|TRAK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.255317 1076.49608 -0.13704 -7.3899E-05 -2.0572 -0.0011094 -2.1942 -0.0011833 539.2541803812966 37.331 0.20189 37.353 37.24 37.442 0.021545 -0.033571 0.00022208 NaN 37.974 21 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3126700 + 39388 23283 26325 26824 -0.03910780188175522 LYSRVQATF 9 Unmodified _LYSRVQATF_ 0 0 0 ENSG00000103264|ENST00000311635|FBXO31;nc|ENSG00000103264|Q5XUX0-2|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7926635742188 2 542.792924 1083.57129 -0.21531 -0.00011687 -0.42808 -0.00023236 -0.64339 -0.00034923 542.792634084925 41.804 0.43604 41.802 41.594 42.03 -0.0017929 46 20 4 0 0 0 0.0093064 2 22316 22316;22432 83.429 41.589 1 34223000 39389 2121 26326 26825 46188;46189 46188 0.032851453345756454 LYSRWSNPGYR 11 Unmodified _LYSRWSNPGYR_ 0 0 0 REV__ENSG00000179715|ENST00000546455|PCED1B REV__ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.8494873046875 2 699.849293 1397.68403 0.22346 0.00015639 -0.64587 -0.00045201 -0.42241 -0.00029562 699.8488018606196 59.545 0.87124 59.054 58.579 59.45 -0.49079 101 41 3 0 0 0 0.50515 1 32347 32347 16.149 0 1 3786200 + 39390 23114 26327 26826 46190 46190 0.0010979406060869223 LYSRYHDC 8 Unmodified _LYSRYHDC_ 0 0 0 ENSG00000256870|ENST00000536262|SLC5A8 ENSG00000256870|ENST00000536262|SLC5A8 ENSG00000256870|ENST00000536262|SLC5A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7323608398438 2 528.732009 1055.44946 0.32563 0.00017217 1.4717 0.00077815 1.7974 0.00095032 528.7327870436193 78.48 0.65417 72.305 72.058 72.712 -6.1757 78 40 2 0 0 0 0.75262 1 51260 51260 12.532 1.7076 1 31049000 39391 10806 26328 26827 46191 46191 -0.07604220019447894 LYSSEQLLI 9 Unmodified _LYSSEQLLI_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2985229492188 2 533.294965 1064.57538 0.68556 0.00036561 0.37872 0.00020197 1.0643 0.00056758 533.2951847725298 73.221 0.33665 73.221 73.028 73.365 0 38 16 3 0 0 0 0.070838 1 40744 40744 39.957 5.5556 1 4696000 39392 7728 26329 26828 46192 46192 0.04567190037619184 LYSSEQLLI 9 Unmodified _LYSSEQLLI_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2938842773438 2 533.294965 1064.57538 0.64128 0.00034199 -1.6702 -0.00089073 -1.029 -0.00054874 533.2940325657917 73.668 0.30455 73.192 73.018 73.323 -0.47588 29 12 3 0 0 0 0.042911 1 40309 40309 48.346 10.372 1 4821800 39393 7728 26329 26828 46193 46193 0.04567190037619184 LYSSEQLLI 9 Unmodified _LYSSEQLLI_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.26806640625 2 533.294965 1064.57538 0.73655 0.0003928 2.6565 0.0014167 3.3931 0.0018095 533.2958360346287 80.864 0.34776 74.688 74.479 74.827 -6.1757 24 18 2 0 0 0 0.06187 1 53018 53018 42.095 15.211 1 16419000 39394 7728 26329 26828 46194 46194 0.04567190037619184 LYSSESHRF 9 Unmodified _LYSSESHRF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8493041992188 3 375.848967 1124.52507 -0.39851 -0.00014978 -0.096878 -3.6411E-05 -0.49538 -0.00018619 375.84886165426514 21.538 0.14011 21.538 21.44 21.58 0 26 19 2 0 0 0 0.331 1 10894 10894 15.739 6.7624 1 1537600 39395 5160 26330 26829 46195 46195 -0.03220919567525016 LYSSESHRF 9 Unmodified _LYSSESHRF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.849365234375 3 375.848967 1124.52507 0.75494 0.00028374 0.30181 0.00011344 1.0568 0.00039718 375.8489277377792 24.16 0.26977 21.332 21.159 21.428 -2.8273 27 14 3 0 0 0 0.18255 1 13101 13101 24.882 7.4389 1 7229800 39396 5160 26330 26829 46196 46196 -0.03220919567525016 LYSSESHRF 9 Unmodified _LYSSESHRF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 375.848967 1124.52507 -0.2537 -9.5352E-05 0.81443 0.0003061 0.56073 0.00021075 376.1836885486864 21.389 0.14633 21.418 21.355 21.502 0.028357 -0.011475 0.00082578 NaN 24.882 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 841250 39397 5160 26330 26829 -0.03220919567525016 LYSSKLYRF 9 Unmodified _LYSSKLYRF_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8853149414062 3 392.885241 1175.63389 0.36247 0.00014241 0.1323 5.1978E-05 0.49477 0.00019439 392.88523082767136 42.656 0.27354 42.647 42.491 42.765 -0.0088196 30 12 3 0 0 0 0.028475 1 22814 22814 51.415 22.921 1 40781000 39398 2856 26331 26830 46197 46197 0.0531029140274768 LYSSKLYRF 9 Unmodified _LYSSKLYRF_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.82421875 2 588.824224 1175.63389 NaN NaN NaN NaN NaN NaN NaN 42.701 1 42.692 42.192 43.192 -0.0088196 0 0 0 0.16996 1 22871 22871 34.402 18.555 1 39399 2856 26331 26830 46198 46198 0.0531029140274768 LYSSKLYRF 9 Unmodified _LYSSKLYRF_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8859252929688 3 392.885241 1175.63389 1.5391 0.0006047 0.47921 0.00018828 2.0183 0.00079297 392.88531012992297 47.408 0.50979 42.174 41.958 42.468 -5.2339 81 30 4 0 0 0 0.0083938 2 29326 29326;29455 96.367 67.872 1 82612000 39400 2856 26331 26830 46199;46200 46199 0.0531029140274768 LYSSKLYRF 9 Unmodified _LYSSKLYRF_ 0 0 0 ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20 ENST00000474988.5_1_6:36410818-36454949:+|nuORF ENST00000474988.5_1_6:36410818-36454949:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8243408203125 2 588.824224 1175.63389 1.2055 0.00070983 -0.68573 -0.00040378 0.51977 0.00030605 588.8235272680818 47.429 0.32784 42.195 42.043 42.371 -5.2339 32 18 2 0 0 0 0.009483 1 29443 29443 81.89 35.869 1 17510000 39401 2856 26331 26830 46201 46201 0.0531029140274768 LYSSQLTL 8 Unmodified _LYSSQLTL_ 0 0 0 REV__ENST00000355264.8_1_10:75881656-75881839:-|nuORF REV__ENST00000355264.8_1_10:75881656-75881839:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 924.5054931640625 1 924.503674 923.496398 0.51043 0.00047189 -0.71206 -0.00065831 -0.20164 -0.00018641 924.5029541447999 67.927 0.36012 67.444 67.255 67.615 -0.48219 39 16 3 0 0 0 0.40035 1 37058 37058 44.407 2.3125 1 10882000 + 39402 25805 26332 26831 46202 46202 0.03158962803343002 LYSSQLTL 8 Unmodified _LYSSQLTL_ 0 0 0 REV__ENST00000355264.8_1_10:75881656-75881839:-|nuORF REV__ENST00000355264.8_1_10:75881656-75881839:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7553100585938 2 462.755475 923.496398 1.0116 0.00046812 -0.1264 -5.8491E-05 0.88519 0.00040963 462.7554826688837 74.439 0.56238 68.263 68.044 68.606 -6.1757 46 29 2 0 0 0 0.44122 2 48635 48635;48752 40.449 4.4044 1 25336000 + 39403 25805 26332 26831 46203;46204 46203 0.03158962803343002 LYSSSCIDEF 10 Unmodified _LYSSSCIDEF_ 0 0 0 ENSG00000188596|ENST00000524981|CFAP54 ENSG00000188596|ENST00000524981|CFAP54 ENSG00000188596|ENST00000524981|CFAP54 MSMS AL20221201_MKP_PDAC_01 4 388.5404052734375 3 388.502357 1162.48524 NaN NaN NaN NaN NaN NaN NaN 43.992 1 39.227 38.727 39.727 -4.7648 0 0 0 0.96627 1 26791 26791 2.086 0 1 39404 9673 26333 26832 46205 46205 -0.08950227353125229 LYSSYQYLK 9 Unmodified _LYSSYQYLK_ 0 0 0 REV__ENSG00000162779|ENST00000367618|AXDND1 REV__ENSG00000162779|ENST00000367618|AXDND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.800537109375 2 582.800414 1163.58628 0.32717 0.00019068 -1.3738 -0.00080064 -1.0466 -0.00060997 582.7993741326724 46.722 0.27589 46.722 46.523 46.799 0 21 12 2 0 0 0 0.12424 1 25523 25523 30.637 7.9003 1 3312600 + 39405 21692 26334 26833 46206 46206 0.011025924118939656 LYSSYQYLK 9 Unmodified _LYSSYQYLK_ 0 0 0 REV__ENSG00000162779|ENST00000367618|AXDND1 REV__ENSG00000162779|ENST00000367618|AXDND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.800414 1163.58628 0.32717 0.00019068 -1.3738 -0.00080064 -1.0466 -0.00060997 582.7993741326724 46.722 0.27589 46.722 46.523 46.799 0 0 0 NaN 30.637 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3312600 + 39406 21692 26334 26833 0.011025924118939656 LYSTAGPVTAW 11 Unmodified _LYSTAGPVTAW_ 0 0 0 REV__ENSG00000143107|ENST00000370017|FNDC7 REV__ENSG00000143107|ENST00000370017|FNDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2980346679688 2 583.298039 1164.58152 0.99473 0.00058023 -1.2217 -0.00071261 -0.22696 -0.00013239 583.2971565850626 65.011 0.28152 65.011 64.836 65.118 7.6294E-06 28 13 3 0 0 0 0.15484 1 35626 35626 36.127 3.8215 1 4264900 + 39407 20604 26335 26834 46207 46207 0.005817082691237374 LYSTDFIVF 9 Unmodified _LYSTDFIVF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7850341796875 2 552.784233 1103.55391 0.93262 0.00051554 0.59699 0.00033001 1.5296 0.00084555 552.7847463370194 100.71 0.11151 94.531 94.472 94.584 -6.1757 13 7 2 0 0 0 0.10925 1 67414 67414 32.117 16.27 1 35863000 39408 9717 26336 26835 46208 46208 0.006278050089122189 LYSVLYMSSL 10 Unmodified _LYSVLYMSSL_ 0 0 0 ENSG00000170961|ENST00000303924|HAS2 ENSG00000170961|ENST00000303924|HAS2 ENSG00000170961|ENST00000303924|HAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8062744140625 2 588.304475 1174.5944 0.22725 0.00013369 0.66342 0.00039029 0.89066 0.00052398 588.3049106641445 31.242 0.20486 31.14 31.034 31.238 -0.10269 17 7 3 0 0 0 0.1028 1 16245 16245 46.021 0 1 5471900 39409 8053 26337 26836 46209 46209 0.014084033370181714 LYSWLREI 8 Unmodified _LYSWLREI_ 0 0 0 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5341186523438 3 360.53432 1078.58113 -0.023873 -8.6072E-06 0.098203 3.5405E-05 0.074329 2.6798E-05 360.53434248745873 34.744 0.31906 34.771 34.628 34.947 0.027401 41 14 4 0 0 0 0.80624 1 18422 18422 1.8442 0 1 25861000 + 39410 19379 26338 26837 46210 46210 0.04498333339961391 LYTALQQYF 9 Unmodified _LYTALQQYF_ 0 0 0 nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF nc|ENSG00000089053|Q9UJX4-3|ANAPC5 nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7977294921875 2 573.795132 1145.57571 1.2538 0.00071941 1.3299 0.00076306 2.5836 0.0014825 573.7957777814958 81.244 0.2387 81.304 81.214 81.452 0.059929 18 8 3 0 0 0 0.0090851 1 44947 44947 85.357 56.87 1 3928200 39411 1511 26339 26838 46211 46211 0.008746097574885425 LYTCFVHMI 9 Unmodified _LYTCFVHMI_ 0 0 0 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7733764648438 2 563.774831 1125.53511 0.90764 0.00051171 -2.4923 -0.0014051 -1.5847 -0.00089342 563.7731833426043 81.611 0.30368 81.116 80.882 81.185 -0.4952 21 12 2 0 0 0 0.46577 1 44711 44711 9.3474 0 1 760930 + 39412 20850 26340 26839 46212 46212 -0.022637711581410258 LYTCFVHMI 9 Unmodified _LYTCFVHMI_ 0 0 0 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 REV__nc|ENSG00000146842|Q96SK2-3|TMEM209 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.774831 1125.53511 0.30732 0.00017326 0.27258 0.00015367 0.57989 0.00032693 563.7751940479765 80.873 0.25928 80.873 80.745 81.004 0 -0.12154 0.0010919 NaN 9.3474 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 417410 + 39413 20850 26340 26839 -0.022637711581410258 LYTCSECGKGF 11 Unmodified _LYTCSECGKGF_ 0 0 0 nc|ENSG00000197619|Q8N8J6|ZNF615;nc|ENSG00000197619|Q8N8J6-3|ZNF615;ENSG00000197619|ENST00000598071|ZNF615 nc|ENSG00000197619|Q8N8J6|ZNF615 nc|ENSG00000197619|Q8N8J6|ZNF615 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2357788085938 2 604.259742 1206.50493 NaN NaN NaN NaN NaN NaN NaN 56.977 1 56.977 56.477 57.477 0 0 0 0 0.9385 1 31700 31700 3.5965 0.31518 1 39414 9981 26341 26840 46213 46213 -0.09006174614000884 LYTDIAIGL 9 Unmodified _LYTDIAIGL_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 MSMS AL20221201_MKP_PDAC_01 4 489.7807312011719 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 97.298 1 91.122 90.622 91.622 -6.1757 0 0 0 0.086291 1 64481 64481 46.921 4.8263 1 39415 1969;16092 26342 26841 46214 46214 0.05367822354457985 LYTDIINIF 9 Unmodified _LYTDIINIF_ 0 0 0 ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA ENST00000533377.1_1_8:145066406-145067006:+|nuORF ENST00000533377.1_1_8:145066406-145067006:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.3063354492188 2 556.305332 1110.59611 2.3294 0.0012958 -2.3788 -0.0013233 -0.049438 -2.7502E-05 556.3041072609336 100.11 0.13544 100.08 99.989 100.12 -0.036301 9 4 3 0 0 0 0.023164 1 55617 55617 60.39 14.369 1 4205300 39416 8768 26343 26842 46215 46215 0.045237804172757023 LYTDIINIF 9 Unmodified _LYTDIINIF_ 0 0 0 ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA ENST00000533377.1_1_8:145066406-145067006:+|nuORF ENST00000533377.1_1_8:145066406-145067006:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3057861328125 2 556.305332 1110.59611 1.2364 0.00068781 -0.063192 -3.5154E-05 1.1732 0.00065265 556.3052814553686 101.19 0.14029 95.015 94.923 95.064 -6.1757 10 8 2 0 0 0 0.023164 1 67866 67866 60.39 2.9182 1 34068000 39417 8768 26343 26842 46216 46216 0.045237804172757023 LYTDIINIF 9 Unmodified _LYTDIINIF_ 0 0 0 ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA ENST00000533377.1_1_8:145066406-145067006:+|nuORF ENST00000533377.1_1_8:145066406-145067006:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 556.305332 1110.59611 0.53906 0.00029988 -0.44368 -0.00024682 0.095377 5.3059E-05 556.3050228434045 100.19 0.07753 100.04 99.982 100.06 -0.1575 -0.019591 0.00013838 NaN 60.39 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 323990 39418 8768 26343 26842 0.045237804172757023 LYTDRTEKL 9 Unmodified _LYTDRTEKL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135381935-135382190:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2081909179688 3 380.208273 1137.60299 -0.4557 -0.00017326 -0.097614 -3.7114E-05 -0.55332 -0.00021038 380.2082329553673 25.203 0.21839 25.203 25.087 25.305 0 18 10 2 0 0 0 0.2546 1 12893 12893 19.362 2.249 1 2465600 39419 3534 26344 26843 46217 46217 0.03969093297860127 LYTDRTEKL 9 Unmodified _LYTDRTEKL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135381935-135382190:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2081298828125 3 380.208273 1137.60299 1.1299 0.00042959 -0.75144 -0.00028571 0.37844 0.00014388 380.2077419554594 28.411 0.62139 25.263 24.952 25.573 -3.1482 40 32 2 0 0 0 0.19349 1 15839 15839 23.801 0.011284 1 8620800 39420 3534 26344 26843 46218 46218 0.03969093297860127 LYTDRTEKL 9 Unmodified _LYTDRTEKL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135381935-135382190:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.208273 1137.60299 -0.4557 -0.00017326 -0.097614 -3.7114E-05 -0.55332 -0.00021038 380.2082329553673 25.203 0.21839 25.203 25.087 25.305 0 -0.030062 0.00031009 NaN 23.801 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2465600 39421 3534 26344 26843 0.03969093297860127 LYTDRTEKL 9 Unmodified _LYTDRTEKL_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000515433.1_1_5:135381935-135382190:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 380.208273 1137.60299 1.1299 0.00042959 -0.75144 -0.00028571 0.37844 0.00014388 380.2077419554594 28.411 0.62139 25.263 24.952 25.573 -3.1482 0.030062 -0.00043569 NaN 23.801 40 32 2 NaN NaN NaN NaN 0 NaN NaN 0 8620800 39422 3534 26344 26843 0.03969093297860127 LYTEAIKFF 9 Unmodified _LYTEAIKFF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3096923828125 2 566.307875 1130.6012 -0.036228 -2.0516E-05 2.2333 0.0012647 2.1971 0.0012442 566.309231834319 76.861 0.24532 76.381 76.255 76.5 -0.47945 19 10 2 0 0 0 0.1773 1 42086 42086 25.399 12.868 1 980460 39423 638 26345 26844 46219 46219 0.04112084279881856 LYTEAIKFF 9 Unmodified _LYTEAIKFF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3063354492188 2 566.307875 1130.6012 0.4048 0.00022924 -0.099595 -5.6401E-05 0.3052 0.00017284 566.3076084714344 76.319 0.36122 76.367 76.204 76.565 0.047943 46 14 4 0 0 0 0.0082353 2 42060 42060;42164 96.111 46.178 1 44329000 39424 638 26345 26844 46220;46221 46220 0.04112084279881856 LYTEAIKFF 9 Unmodified _LYTEAIKFF_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8104858398438 2 566.307875 1130.6012 1.2774 0.0007234 0.30896 0.00017497 1.5864 0.00089837 566.3082455099841 92.017 0.87645 85.842 85.29 86.166 -6.1757 132 50 3 0 0 0 0.013041 4 60823 60586;60705;60823;60947 71.922 41.286 1 47979000 39425 638 26345 26844 46222;46223;46224;46225 46224 0.04112084279881856 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2909545898438 2 603.289879 1204.56521 0.15952 9.6239E-05 -0.64828 -0.0003911 -0.48875 -0.00029486 603.2895178711952 53.39 0.46058 53.39 53.166 53.627 0 79 20 6 0 0 0 0.073961 2 29509 29509;29616 49.554 17.249 1 408230000 39426 1391 26346 26845 46226;46227 46226 -0.028894176876065103 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2887573242188 2 603.289879 1204.56521 0.33209 0.00020034 -0.42327 -0.00025535 -0.09118 -5.5008E-05 603.2895653448398 54.002 0.39978 53.535 53.327 53.727 -0.46664 69 19 5 0 0 0 0.024507 2 29163 29163;29269 72.968 43.886 1 115790000 39427 1391 26346 26845 46228;46229 46228 -0.028894176876065103 LYTEKFEEF 9 Unmodified _LYTEKFEEF_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.2888793945312 2 603.289879 1204.56521 -0.40563 -0.00024471 -0.78301 -0.00047238 -1.1886 -0.00071709 603.2891097009114 53.585 0.20737 53.522 53.381 53.589 -0.063423 24 11 3 0 0 0 0.01861 1 29053 29053 79.596 43.552 1 18670000 39428 1391 26346 26845 46230 46230 -0.028894176876065103 LYTELFTGF 9 Unmodified _LYTELFTGF_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.778076171875 2 545.776408 1089.53826 1.9287 0.0010527 0.4153 0.00022666 2.344 0.0012793 545.7767915811762 93.955 0.34785 93.969 93.837 94.184 0.014244 25 13 3 0 0 0 0.078417 1 52241 52241 38.151 21.065 1 2052300 39429 6845 26347 26846 46231 46231 -0.0029248150810872175 LYTELFTGF 9 Unmodified _LYTELFTGF_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7774658203125 2 545.776408 1089.53826 1.2046 0.00065746 -0.42094 -0.00022974 0.7837 0.00042772 545.7760944339724 100.17 0.14587 93.992 93.912 94.058 -6.1757 16 8 3 0 0 0 0.013472 1 66917 66917 70.716 28.621 1 42198000 39430 6845 26347 26846 46232 46232 -0.0029248150810872175 LYTETFEFAPP 11 Unmodified _LYTETFEFAPP_ 0 0 0 REV__nc|ENSG00000150712|Q9C0I1-2|MTMR12 REV__nc|ENSG00000150712|Q9C0I1-2|MTMR12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.8808898925781 3 438.879933 1313.61797 1.0818 0.00047478 0.52453 0.00023021 1.6063 0.00070499 438.88024406263247 34.823 0.46998 30.728 30.503 30.973 -4.0951 83 27 4 0 0 0 0.6889 1 20183 20183 4.4062 2.3201 1 40390000 + 39431 21034 26348 26847 46233 46233 -0.02629459624813535 LYTEVTRYL 9 Unmodified _LYTEVTRYL_ 0 0 0 ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3150634765625 2 579.313689 1156.61282 -0.059947 -3.4728E-05 0.38979 0.00022581 0.32984 0.00019108 579.3136160699779 61.451 0.19276 60.962 60.858 61.051 -0.48932 14 8 2 0 0 0 0.11005 1 33486 33486 32.037 1.4009 1 1077500 39432 793 26349 26848 46234 46234 0.04078281303259246 LYTEVTRYL 9 Unmodified _LYTEVTRYL_ 0 0 0 ENSG00000057608|ENST00000380191|GDI2;ENSG00000203879|ENST00000447750|GDI1;ENST00000491154.1_1_X:153666748-153668487:+|nuORF ENSG00000057608|ENST00000380191|GDI2 ENSG00000057608|ENST00000380191|GDI2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 579.313689 1156.61282 0.65717 0.00038071 0.19654 0.00011386 0.8537 0.00049456 579.3140187326172 61.061 0.11726 61.017 60.927 61.044 -0.04351 0.027703 -0.00017907 NaN 32.037 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1820400 39433 793 26349 26848 0.04078281303259246 LYTFFKLF 8 Unmodified _LYTFFKLF_ 0 0 0 REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF REV__ENST00000502726.5_1_4:47685742-47840047:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8026123046875 2 539.802229 1077.5899 0.5475 0.00029554 -2.0087 -0.0010843 -1.4612 -0.00078878 539.8018764252035 58.699 0.27568 58.639 58.526 58.801 -0.060719 28 13 3 0 0 0 0.80044 1 31975 31975 6.3541 0.14832 1 2344300 + 39434 20762 26350 26849 46235 46235 0.05421306976404594 LYTFIKHEF 9 Unmodified _LYTFIKHEF_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8822631835938 3 399.881608 1196.623 0.20021 8.0061E-05 0.55791 0.0002231 0.75812 0.00030316 399.88173955904017 51.103 0.2793 50.689 50.557 50.836 -0.41351 41 13 4 0 0 0 0.2289 1 27520 27520 20.581 8.3403 1 11957000 39435 14623 26351 26850 46236 46236 0.03254889028448815 LYTFIKHEF 9 Unmodified _LYTFIKHEF_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8819274902344 3 399.881608 1196.623 0.47988 0.0001919 -0.27324 -0.00010926 0.20664 8.2631E-05 399.8814415083274 50.742 0.37181 50.688 50.51 50.882 -0.053871 60 18 4 0 0 0 0.171 2 27396 27396;27497 26.021 13.846 1 117200000 39436 14623 26351 26850 46237;46238 46237 0.03254889028448815 LYTFIKHEF 9 Unmodified _LYTFIKHEF_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3191528320312 2 599.318774 1196.623 0.51379 0.00030792 1.8276 0.0010953 2.3414 0.0014032 599.3195279441612 50.761 0.23348 50.707 50.57 50.803 -0.053871 35 11 4 0 0 0 0.053952 1 27476 27476 32.786 12.332 1 9515700 39437 14623 26351 26850 46239 46239 0.03254889028448815 LYTFIKHEF 9 Unmodified _LYTFIKHEF_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8820495605469 3 399.881608 1196.623 0.29804 0.00011918 0.4047 0.00016183 0.70273 0.00028101 399.88170364718235 56.165 0.35297 50.189 49.985 50.338 -5.9769 32 20 2 0 0 0 0.26811 1 35888 35888 18.721 9.1773 1 49716000 39438 14623 26351 26850 46240 46240 0.03254889028448815 LYTFIKHEF 9 Unmodified _LYTFIKHEF_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 598.7874145507812 2 599.318774 1196.623 0.34596 0.00020734 -1.4021 -0.00084032 -1.0562 -0.00063298 599.8197336061005 74.875 0.41313 68.699 68.568 68.981 -6.1757 29 21 2 0 0 0 0.072954 1 49118 49118 47.594 9.6204 1 7610600 39439 14623 26351 26850 46241 46241 0.03254889028448815 LYTFRYHEW 9 Unmodified _LYTFRYHEW_ 0 0 0 ENSG00000165905|ENST00000401752|LARGE2;ENST00000530437.5_1_11:45947935-45950393:+|nuORF;ENST00000528236.5_1_11:45949456-45950393:+|nuORF ENSG00000165905|ENST00000401752|LARGE2 ENSG00000165905|ENST00000401752|LARGE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.21484375 3 438.880379 1313.61931 0.41285 0.00018119 0.96305 0.00042266 1.3759 0.00060386 438.8809571382271 30.78 0.24418 30.678 30.571 30.815 -0.10269 33 9 5 0 0 0 0.36964 1 15962 15962 9.544 4.1413 1 16164000 39440 7403 26352 26851 46242 46242 -0.024957807454029535 LYTFRYHEW 9 Unmodified _LYTFRYHEW_ 0 0 0 ENSG00000165905|ENST00000401752|LARGE2;ENST00000530437.5_1_11:45947935-45950393:+|nuORF;ENST00000528236.5_1_11:45949456-45950393:+|nuORF ENSG00000165905|ENST00000401752|LARGE2 ENSG00000165905|ENST00000401752|LARGE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2158203125 3 438.880379 1313.61931 1.0818 0.00047478 -0.49124 -0.00021559 0.59056 0.00025919 438.88024406263247 34.823 0.46998 30.728 30.503 30.973 -4.0951 83 27 4 0 0 0 0.25681 1 20056 20056 13.615 5.1706 1 40390000 39441 7403 26352 26851 46243 46243 -0.024957807454029535 LYTGTVSSF 9 Unmodified _LYTGTVSSF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.48193359375 1 974.482939 973.475663 0.30414 0.00029638 -0.37127 -0.00036179 -0.067129 -6.5416E-05 974.4827966988621 52.849 0.25367 52.849 52.728 52.982 0 27 11 3 0 0 0 0.023164 1 29228 29228 60.39 20.432 1 5279000 39442 9321 26353 26852 46244 46244 -0.012136275763168669 LYTGTVSSF 9 Unmodified _LYTGTVSSF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.4834594726562 1 974.482939 973.475663 0.33746 0.00032885 0.41413 0.00040357 0.7516 0.00073242 974.483422652953 53.467 0.32523 53.016 52.823 53.148 -0.45173 46 15 4 0 0 0 0.0086179 2 28962 28859;28962 89.427 17.595 1 22258000 39443 9321 26353 26852 46245;46246 46246 -0.012136275763168669 LYTGTVSSF 9 Unmodified _LYTGTVSSF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.484375 1 974.482939 973.475663 0.56108 0.00054676 1.1023 0.0010742 1.6634 0.001621 974.4838395505448 53.067 0.1797 53.004 52.901 53.08 -0.063423 13 8 2 0 0 0 0.095405 1 28772 28772 34.102 5.6156 1 1440600 39444 9321 26353 26852 46247 46247 -0.012136275763168669 LYTGTVSSF 9 Unmodified _LYTGTVSSF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.484375 1 974.482939 973.475663 0.79144 0.00077125 0.025546 2.4895E-05 0.81699 0.00079614 974.4825796518925 61.059 0.41116 54.911 54.686 55.097 -6.1478 48 21 3 0 0 0 0.0048787 2 39211 39211;39336 117.6 39.614 1 72704000 39445 9321 26353 26852 46248;46249 46248 -0.012136275763168669 LYTGTVSSF 9 Unmodified _LYTGTVSSF_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7450866699219 2 487.745108 973.475663 1.1033 0.00053812 -0.03959 -1.931E-05 1.0637 0.00051881 487.7449587332204 61.041 0.36974 54.893 54.706 55.076 -6.1478 31 19 2 0 0 0 0.12841 1 39235 39235 30.225 7.0764 1 37377000 39446 9321 26353 26852 46250 46250 -0.012136275763168669 LYTGYWEF 8 Unmodified _LYTGYWEF_ 0 0 0 REV__nc|ENSG00000010165|Q8N6R0-1|METTL13 REV__nc|ENSG00000010165|Q8N6R0-1|METTL13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.745849609375 2 539.74765 1077.48075 0.72019 0.00038872 -3.1407 -0.0016952 -2.4206 -0.0013065 539.7452896099593 50.505 0.21932 50.091 49.95 50.17 -0.41351 19 10 3 0 0 0 0.72953 1 27211 27211 14.582 3.7578 1 1913500 + 39447 17042 26354 26853 46251 46251 -0.05489323713709382 LYTHIVTDI 9 Unmodified _LYTHIVTDI_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7940063476562 2 537.795132 1073.57571 0.54827 0.00029486 -0.43307 -0.0002329 0.1152 6.1956E-05 537.7950827697764 53.594 0.31067 53.594 53.486 53.797 0 22 14 2 0 0 0 0.026094 1 29704 29704 57.471 15.377 1 7619400 39448 10075 26355 26854 46252 46252 0.0418660975747116 LYTHIVTDI 9 Unmodified _LYTHIVTDI_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7948608398438 2 537.795132 1073.57571 0.16232 8.7296E-05 0.67212 0.00036146 0.83445 0.00044876 537.7949633857265 54.085 0.51363 53.619 53.327 53.841 -0.46664 61 25 4 0 0 0 0.0083087 1 29270 29270 97.075 19.09 1 13813000 39449 10075 26355 26854 46253 46253 0.0418660975747116 LYTHIVTDI 9 Unmodified _LYTHIVTDI_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MSMS AL20221201_MKP_PDAC_01 4 537.7954711914062 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 60.273 1 54.158 53.658 54.658 -6.1147 0 0 0 0.019979 1 38777 38777 112.59 38.17 1 39450 10075 26355 26854 46254 46254 0.0418660975747116 LYTHIVTDI 9 Unmodified _LYTHIVTDI_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF;ENST00000515836.5_1_4:76896898-76898807:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MSMS AL20221201_MKP_PDAC_01 4 537.7958374023438 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 60.452 1 54.304 53.804 54.804 -6.1478 0 0 0 0.17247 1 38903 38903 34.102 7.2188 1 39451 10075 26355 26854 46255 46255 0.0418660975747116 LYTHWISF 8 Unmodified _LYTHWISF_ 0 0 0 ENST00000530961.5_1_11:66372641-66373323:+|nuORF ENST00000530961.5_1_11:66372641-66373323:+|nuORF ENST00000530961.5_1_11:66372641-66373323:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.3141479492188 2 533.77146 1065.52837 1.1611 0.00061975 -0.37822 -0.00020189 0.78286 0.00041787 533.7721413751807 90.543 0.19859 84.367 84.275 84.474 -6.1757 13 11 2 0 0 0 8.7369 1 59865 59865 20.871 2.7362 1 6087100 39452 14898 26356 26855 46256 46256 -0.0017762472286904085 LYTILTTQL 9 Unmodified _LYTILTTQL_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3131103515625 2 533.313158 1064.61176 0.52224 0.00027852 1.8185 0.00096981 2.3407 0.0012483 533.3139254348981 82.71 0.34929 82.213 82.008 82.357 -0.49751 32 14 3 0 0 0 0.18465 1 45303 45303 24.674 6.5389 1 1069300 39453 4082 26357 26856 46257 46257 0.08204066934331422 LYTILTTQL 9 Unmodified _LYTILTTQL_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3140869140625 2 533.313158 1064.61176 1.6655 0.00088824 -0.893 -0.00047625 0.77252 0.000412 533.3126457613197 82.063 0.31623 82.125 81.954 82.27 0.062004 34 12 3 0 0 0 0.03327 1 45353 45353 53.576 13.618 1 9093000 39454 4082 26357 26856 46258 46258 0.08204066934331422 LYTILTTQL 9 Unmodified _LYTILTTQL_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3152465820312 2 533.313158 1064.61176 0.98431 0.00052494 1.2417 0.00066222 2.226 0.0011872 533.3139493187034 90.481 0.48255 84.305 84.041 84.523 -6.1757 49 28 2 0 0 0 0.06187 1 59706 59706 42.095 18.946 1 23819000 39455 4082 26357 26856 46259 46259 0.08204066934331422 LYTKCLQQL 9 Carbamidomethyl (C) _LYTKC(Carbamidomethyl (C))LQQL_ LYTKC(1)LQQL LYTKC(110)LQQL 0 1 0 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 ENSG00000105186|ENST00000306065|ANKRD27 MSMS AL20221201_MKP_PDAC_01 4 583.8158569335938 2 583.815541 1165.61653 NaN NaN NaN NaN NaN NaN NaN 49.995 1 44.456 43.956 44.956 -5.5391 0 0 0 0.016921 1 31302 31302 110.67 36.278 1 39456 2284 26358 26857 46260 46260 225 0.040346278054357754 LYTKLLEQE 9 Unmodified _LYTKLLEQE_ 0 0 0 ENSG00000077684|ENST00000226319|JADE1;nc|ENSG00000077684|Q6IE81-2|JADE1 ENSG00000077684|ENST00000226319|JADE1 ENSG00000077684|ENST00000226319|JADE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.1940002441406 3 379.544773 1135.61249 0.30512 0.00011581 -1.4404 -0.00054671 -1.1353 -0.0004309 379.5438638224671 25.728 0.26314 22.776 22.594 22.857 -2.9511 21 14 2 0 0 0 0.19613 1 14049 14049 8.1555 1.5252 1 5899800 39457 1224 26359 26858 46261 46261 0.05010861583377846 LYTLCTTYLD 10 Unmodified _LYTLCTTYLD_ 0 0 0 REV__ENST00000409262.7_1_2:74331974-74332148:+|nuORF REV__ENST00000409262.7_1_2:74331974-74332148:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2896118164062 2 603.291565 1204.56858 0.41601 0.00025097 0.64077 0.00038657 1.0568 0.00063755 603.2898134497086 59.912 1.1113 53.797 53.496 54.607 -6.1147 255 60 6 0 0 0 0.2178 1 38756 38756 32.305 1.0371 1 1095700000 + 39458 26684 26360 26859 46262 46262 -0.025524909052819567 LYTMMKDQY 9 Unmodified _LYTMMKDQY_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1842956542969 3 398.184082 1191.53042 0.70728 0.00028163 -0.95339 -0.00037962 -0.2461 -9.7995E-05 398.18396454515363 47.142 0.29385 46.804 46.659 46.953 -0.33794 50 14 5 0 0 0 0.58466 1 25347 25347 1.1933 0.41681 1 35054000 39459 780;4627 26361 26860 46263 46263 -0.05768700091584833 LYTMNPNKF 9 Oxidation (M) _LYTM(Oxidation (M))NPNKF_ LYTM(1)NPNKF LYTM(44)NPNKF 0 0 1 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.279296875 2 572.278792 1142.54303 0.01922 1.0999E-05 0.24173 0.00013834 0.26095 0.00014934 572.2789086507257 32.397 0.19469 32.268 32.176 32.37 -0.12915 13 8 2 0 0 0 0.05447 1 16874 16874 43.858 29.02 1 2139600 39460 6962 26362 26861 46264 46264 1201 -0.022539206370538523 LYTPEHHLI 9 Unmodified _LYTPEHHLI_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8698120117188 3 374.869591 1121.58694 0.15999 5.9975E-05 0.39527 0.00014817 0.55526 0.00020815 374.8697321611472 37.136 0.30007 37.136 36.977 37.277 0 45 14 4 0 0 0 0.14 1 19701 19701 29.082 23.35 1 6846800 39461 4160 26363 26862 46265 46265 0.031014318516326966 LYTPEHHLI 9 Unmodified _LYTPEHHLI_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.869873046875 3 374.869591 1121.58694 -0.1374 -5.1507E-05 0.093605 3.509E-05 -0.043794 -1.6417E-05 374.8699385838334 37.462 0.38328 37.191 36.992 37.375 -0.27133 58 15 6 0 0 0 0.14 1 19661 19661 29.082 20.926 1 15665000 39462 4160 26363 26862 46266 46266 0.031014318516326966 LYTPEHHLI 9 Unmodified _LYTPEHHLI_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8025512695312 2 561.800749 1121.58694 0.027161 1.5259E-05 2.4982 0.0014035 2.5254 0.0014188 561.8019730226455 37.398 0.35815 37.127 36.921 37.279 -0.27133 24 14 2 0 0 0 0.094149 1 19689 19689 30.225 16.717 1 1410000 39463 4160 26363 26862 46267 46267 0.031014318516326966 LYTPEHHLI 9 Unmodified _LYTPEHHLI_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.800749 1121.58694 0.43798 0.00024606 0.83448 0.00046881 1.2725 0.00071487 561.801113618027 37.104 0.18188 37.104 37.037 37.219 0 -0.011353 -0.0011114 NaN 30.225 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 641370 39464 4160 26363 26862 0.031014318516326966 LYTPHSWLL 9 Unmodified _LYTPHSWLL_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.305908203125 2 565.305667 1128.59678 0.60389 0.00034138 -0.89518 -0.00050605 -0.29129 -0.00016467 565.3052196681268 73.848 0.2926 73.892 73.713 74.006 0.043983 34 13 4 0 0 0 0.28047 1 40741 40741 18.135 4.6271 1 7866800 39465 6712 26364 26863 46268 46268 0.03762619857002392 LYTPHSWLL 9 Unmodified _LYTPHSWLL_ 0 0 0 nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS nc|ENSG00000160285|P48449-2|LSS nc|ENSG00000160285|P48449-2|LSS MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3065185546875 2 565.305667 1128.59678 1.1954 0.00067576 0.63046 0.0003564 1.8258 0.0010322 565.8076492000866 92.189 0.30891 86.013 85.806 86.115 -6.1757 30 18 2 0 0 0 0.0048787 1 60926 60926 117.6 64.023 1 25568000 39466 6712 26364 26863 46269 46269 0.03762619857002392 LYTPVLIRF 9 Unmodified _LYTPVLIRF_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3400268554688 2 561.33951 1120.66447 0.72806 0.00040869 -0.63124 -0.00035434 0.096821 5.4349E-05 561.339266859636 83.387 0.57507 83.45 83.182 83.757 0.063171 62 21 4 0 0 0 0.0083938 2 46053 46053;46150 108 60.248 1 117210000 39467 2696 26365 26864 46270;46271 46270 0.10896069787804663 LYTPVLIRF 9 Unmodified _LYTPVLIRF_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1;ENST00000528096.1_1_11:67766987-67770655:-|nuORF;ENST00000530138.3_1_11:67766987-67771573:-|nuORF ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3406372070312 2 561.33951 1120.66447 1.4961 0.0008398 0.05279 2.9633E-05 1.5489 0.00086943 561.339606412102 98.04 0.31311 91.864 91.701 92.014 -6.1757 65 19 4 0 0 0 0.018301 2 64919 64919;65040 65.235 29.108 1 644360000 39468 2696 26365 26864 46272;46273 46272 0.10896069787804663 LYTQPPLKF 9 Unmodified _LYTQPPLKF_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8161010742188 2 553.815867 1105.61718 0.41593 0.00023035 0.56854 0.00031487 0.98447 0.00054522 553.8159344708326 60.002 0.19607 59.948 59.856 60.052 -0.053062 13 9 2 0 0 0 0.024882 1 32732 32732 58.679 20.705 1 3915800 39469 1720 26366 26865 46274 46274 0.06859790516796238 LYTQQKVEI 9 Unmodified _LYTQQKVEI_ 0 0 0 ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC ENSG00000162441|ENST00000377223|LZIC ENSG00000162441|ENST00000377223|LZIC MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.81689453125 2 561.313689 1120.61282 1.5864 0.00089046 0.99865 0.00056055 2.585 0.001451 561.3146296714347 58.987 0.45213 52.913 52.665 53.117 -6.0745 39 18 3 0 0 0 0.069655 1 37807 37807 40.239 3.1646 1 53103000 39470 6863 26367 26866 46275 46275 0.05734281303239186 LYTQSLARL 9 Unmodified _LYTQSLARL_ 0 0 0 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 ENSG00000275342|ENST00000615670|PRAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3079833984375 2 532.808574 1063.60259 1.1041 0.00058826 -2.6485 -0.0014112 -1.5445 -0.0008229 533.3076845666143 50.439 0.36385 50.391 50.23 50.594 -0.048828 26 17 2 0 0 0 0.11784 1 27276 27276 31.268 9.7314 1 1949200 39471 10906 26368 26867 46276 46276 0.07333718368658992 LYTQTASTSYY 11 Unmodified _LYTQTASTSYY_ 0 0 0 ENST00000589239.5_1_19:14080804-14104655:-|nuORF;ENSG00000132005|ENST00000254325|RFX1 ENST00000589239.5_1_19:14080804-14104655:-|nuORF ENST00000589239.5_1_19:14080804-14104655:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5677795410156 3 433.203076 1296.5874 0.29054 0.00012586 1.0712 0.00046406 1.3618 0.00058992 433.5378009944275 51.95 0.212 51.516 51.4 51.612 -0.43367 15 10 2 0 0 0 0.71036 1 28015 28015 1.3296 0 1 1218000 39472 4367 26369 26868 46277 46277 -0.049032380098424255 LYTRRENNI 9 Unmodified _LYTRRENNI_ 0 0 0 REV__nc|ENSG00000242715|A6NNP5-5|CCDC169 REV__nc|ENSG00000242715|A6NNP5-5|CCDC169 MSMS AL20221201_MKP_PDAC_01 4 589.7724609375 2 589.817461 1177.62037 NaN NaN NaN NaN NaN NaN NaN 44.558 1 39.706 39.206 40.206 -4.852 0 0 0 0.17798 1 27218 27218 33.445 7.1768 1 + 39473 24465 26370 26869 46278 46278 0.03866433623534249 LYTRRMKL 8 Unmodified _LYTRRMKL_ 0 0 0 ENST00000535170.5_1_7:99638839-99639052:+|nuORF ENST00000535170.5_1_7:99638839-99639052:+|nuORF ENST00000535170.5_1_7:99638839-99639052:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7933349609375 2 540.820961 1079.62737 0.66144 0.00035772 -0.69868 -0.00037786 -0.037233 -2.0137E-05 541.3219351063929 102.04 0.10416 95.865 95.814 95.918 -6.1757 12 4 4 0 0 0 0.77907 1 68465 68465 10.183 0.83596 1 9318900 39474 14968 26371 26870 46279 46279 0.09074074970385482 LYTRYRFF 8 Unmodified _LYTRYRFF_ 0 0 0 REV__nc|ENSG00000125505|Q96N66-2|MBOAT7 REV__nc|ENSG00000125505|Q96N66-2|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2092590332031 3 389.209948 1164.60801 0.54211 0.000211 -3.1325 -0.0012192 -2.5904 -0.0010082 389.2097751224041 23.814 0.42439 20.987 20.772 21.196 -2.8273 52 25 3 0 0 0 0.79783 1 12871 12871 5.7319 0.43497 1 10769000 + 39475 19498 26372 26871 46280 46280 0.03229441951111767 LYTSFESPY 9 Unmodified _LYTSFESPY_ 0 0 0 REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF REV__ENST00000431611.5_2_22:38689311-38696738:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7548828125 2 553.755672 1105.49679 1.0292 0.00056994 -0.65399 -0.00036215 0.37523 0.00020779 553.7554324206397 46.396 0.37276 46.396 46.108 46.481 0 23 17 2 0 0 0 0.087258 1 25356 25356 36.044 0 1 2389700 + 39476 26982 26373 26872 46281 46281 -0.05173662267452528 LYTSHSNSF 9 Unmodified _LYTSHSNSF_ 0 0 0 ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF ENST00000376946.2_1_10:22209591-22217997:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2446899414062 2 528.243264 1054.47197 NaN NaN NaN NaN NaN NaN NaN 85.493 1 84.991 84.491 85.491 -0.5015 0 0 0 0.50124 1 46787 46787 15.847 6.4997 1 39477 12512 26374 26873 46282 46282 -0.053082973501886954 LYTSSPSCMSL 11 Unmodified _LYTSSPSCMSL_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.847900390625 3 396.847359 1187.52025 0.86251 0.00034228 0.84042 0.00033352 1.7029 0.0006758 396.84762435160167 100.56 0.10294 100.52 100.48 100.58 -0.04216 5 3 2 0 0 0 0.71618 1 55886 55886 1.1098 0 1 10328000 39478 2360 26375 26874 46283 46283 -0.06601307816799817 LYTTVFLI 8 Unmodified _LYTTVFLI_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 969.572265625 1 969.565546 968.55827 4.5105 0.0043732 0.28677 0.00027804 4.7973 0.0046513 969.5651675485616 99.231 0.16652 99.202 99.108 99.274 -0.028282 13 5 3 0 0 0 0.2655 1 55100 55100 59.795 10.126 1 6868000 39479 10865 26376 26875 46284 46284 0.07273314222470617 LYTYDGEVSMS 11 Unmodified _LYTYDGEVSMS_ 0 0 0 REV__ENSG00000092201|ENST00000216297|SUPT16H REV__ENSG00000092201|ENST00000216297|SUPT16H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.771240234375 2 632.773736 1263.53292 0.13163 8.3292E-05 -0.2436 -0.00015414 -0.11197 -7.085E-05 632.7736556331932 80.296 0.22795 80.296 80.18 80.408 0 15 11 2 0 0 0 0.71036 2 44568 44568;44608 3.2813 0.97858 1 431070 + 39480 17908 26377 26876 46285;46286 46285 -0.0883057315293172 LYTYPENWR 9 Unmodified _LYTYPENWR_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.0369262695312 3 414.536501 1240.58767 -0.091979 -3.8129E-05 -0.19568 -8.1115E-05 -0.28766 -0.00011924 414.5364270875479 16.92 0.32728 16.925 16.772 17.099 0.0050564 73 31 3 0 0 0 0.21874 1 8440 8440 1.1933 0.41681 1 2067200 39481 10781 26378 26877 46287 46287 -0.02299773499339608 LYVAGNLGGKF 11 Unmodified _LYVAGNLGGKF_ 0 0 0 REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF REV__ENST00000538387.1_1_12:30882254-30888041:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8195190429688 2 569.816399 1137.61824 0.18755 0.00010687 1.7266 0.00098384 1.9141 0.0010907 569.8176086229226 79.874 0.27023 79.932 79.824 80.094 0.057587 18 10 3 0 0 0 0.39949 1 44145 44145 21.537 1.0834 1 2407700 + 39482 18727 26379 26878 46288 46288 0.054940048857361035 LYVARLRNGTP 11 Unmodified _LYVARLRNGTP_ 0 0 0 REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5792236328125 3 420.578811 1258.7146 0.98649 0.0004149 -0.04168 -1.753E-05 0.94481 0.00039737 420.57889208886354 40.547 0.27364 36.017 35.889 36.163 -4.5294 25 16 2 0 0 0 0.42108 1 24265 24265 12.228 4.0721 1 6487800 + 39483 27414 26380 26879 46289 46289 0.09559572445641606 LYVARLRNGTP 11 Unmodified _LYVARLRNGTP_ 0 0 0 REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 420.578811 1258.7146 -0.13821 -5.8127E-05 -0.5591 -0.00023515 -0.69731 -0.00029327 420.57862348929604 35.639 0.41354 35.664 35.515 35.928 0.024967 -0.17652 -0.00020995 NaN 12.228 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 13029000 + 39484 27414 26380 26879 0.09559572445641606 LYVDAGNIILY 11 Unmodified _LYVDAGNIILY_ 0 0 0 REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF REV__ENST00000358015.7_1_9:110093006-110093297:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 627.3442993164062 2 627.342446 1252.67034 NaN NaN NaN NaN NaN NaN NaN 98.74 1 92.564 92.064 93.064 -6.1757 0 0 0 0.82644 1 65541 65541 10.8 1.4164 1 + 39485 25863 26381 26880 46290 46290 0.054111235088385 LYVDFPQHL 9 Unmodified _LYVDFPQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2950439453125 2 566.295299 1130.57605 0.30436 0.00017236 0.414 0.00023445 0.71836 0.0004068 566.2954846088907 69.096 0.32261 68.615 68.465 68.788 -0.48071 33 13 3 0 0 0 0.047714 1 37749 37749 58.679 24.277 1 7191500 39486 7545 26382 26881 46291 46291 0.015980294773271453 LYVDFPQHL 9 Unmodified _LYVDFPQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2928466796875 2 566.295299 1130.57605 0.83074 0.00047044 -1.1168 -0.00063244 -0.28607 -0.000162 566.2944354683411 68.613 0.20241 68.638 68.499 68.701 0.025146 22 9 3 0 0 0 0.21589 1 37690 37690 29.082 16.55 1 3486500 39487 7545 26382 26881 46292 46292 0.015980294773271453 LYVDFPQHL 9 Unmodified _LYVDFPQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.29541015625 2 566.295299 1130.57605 0.35575 0.00020146 -0.079967 -4.5285E-05 0.27578 0.00015618 566.2951270885711 76.946 0.43178 70.771 70.541 70.973 -6.1757 28 22 2 0 0 0 0.024189 2 50298 50298;50426 74.929 40.827 1 14296000 39488 7545 26382 26881 46293;46294 46293 0.015980294773271453 LYVDFPQHL 9 Unmodified _LYVDFPQHL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MSMS AL20221201_MKP_PDAC_01 4 566.2931518554688 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 76.704 1 70.528 70.028 71.028 -6.1757 0 0 0 0.18978 1 50171 50171 41.84 15.498 1 39489 7545 26382 26881 46295 46295 0.015980294773271453 LYVDKSLNL 9 Unmodified _LYVDKSLNL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.802978515625 2 532.802957 1063.59136 1.0312 0.00054944 -0.7614 -0.00040568 0.26983 0.00014377 532.8026676007747 54.447 0.49087 54.447 54.173 54.664 0 41 21 3 0 0 0 0.008513 1 30212 30212 99.755 23.994 1 8614800 39490 10392 26383 26882 46296 46296 0.062108962745242025 LYVDKSLNL 9 Unmodified _LYVDKSLNL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8030395507812 2 532.802957 1063.59136 0.11919 6.3504E-05 0.12455 6.6359E-05 0.24374 0.00012986 532.803042929902 54.93 0.33753 54.452 54.27 54.607 -0.47798 43 16 4 0 0 0 0.0082353 1 29814 29814 96.111 28.03 1 14485000 39491 10392 26383 26882 46297 46297 0.062108962745242025 LYVDKSLNL 9 Unmodified _LYVDKSLNL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.802734375 2 532.802957 1063.59136 1.0352 0.00055158 0.11758 6.2648E-05 1.1528 0.00061423 532.8028382299227 61.175 0.36574 55.028 54.809 55.175 -6.1478 31 18 2 0 0 0 0.0087807 2 39452 39319;39452 106.94 37.835 1 55097000 39492 10392 26383 26882 46298;46299 46299 0.062108962745242025 LYVDKSLNL 9 Unmodified _LYVDKSLNL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.802957 1063.59136 0.24348 0.00012973 -0.49906 -0.0002659 -0.25558 -0.00013617 532.8028981769645 54.588 0.15878 54.521 54.463 54.622 -0.066936 0.04748 -0.00039557 NaN 96.111 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1841500 39493 10392 26383 26882 0.062108962745242025 LYVDPYEL 8 Unmodified _LYVDPYEL_ 0 0 0 ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX ENSG00000163964|ENST00000392391|PIGX ENSG00000163964|ENST00000392391|PIGX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2555541992188 2 506.255308 1010.49606 0.2454 0.00012423 0.26723 0.00013529 0.51263 0.00025952 506.2556730892074 51.832 0.24113 51.832 51.689 51.93 0 21 10 3 0 0 0 0.67481 1 28662 28662 19.439 3.5918 1 3767500 39494 7109 26384 26883 46300 46300 -0.008764569165350622 LYVEKVLEF 9 Unmodified _LYVEKVLEF_ 0 0 0 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.321044921875 2 570.320983 1138.62741 0.96107 0.00054812 -0.26239 -0.00014965 0.69868 0.00039847 570.3211048816024 91.117 0.54354 84.942 84.644 85.188 -6.1757 44 31 2 0 0 0 0.094905 1 60183 60183 43.772 10.987 1 9372800 39495 10688 26385 26884 46301 46301 0.06364353451385796 LYVFVGQDF 9 Unmodified _LYVFVGQDF_ 0 0 0 ENSG00000171049|ENST00000340023|FPR2 ENSG00000171049|ENST00000340023|FPR2 ENSG00000171049|ENST00000340023|FPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2761840820312 2 544.276575 1086.5386 0.092906 5.0566E-05 -0.481 -0.0002618 -0.38809 -0.00021123 544.2764114575141 102.56 0.11407 102.45 102.39 102.5 -0.11613 10 4 3 0 0 0 0.32871 1 55957 55957 15.847 6.4641 1 1613900 39496 8056 26386 26885 46302 46302 -0.0012106178828616976 LYVFVGRDF 9 Unmodified _LYVFVGRDF_ 0 0 0 ENSG00000142511|ENST00000270590|GPR32 ENSG00000142511|ENST00000270590|GPR32 ENSG00000142511|ENST00000270590|GPR32 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.767822265625 2 558.297842 1114.58113 0.50441 0.00028161 -1.6817 -0.00093889 -1.1773 -0.00065728 558.2971397787798 65.138 0.23859 64.653 64.575 64.814 -0.48428 14 10 2 0 0 0 0.21367 1 35623 35623 4.756 0.42677 1 1453500 39497 5418 26387 26886 46303 46303 0.028423333399587136 LYVGGYERPF 10 Unmodified _LYVGGYERPF_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8045654296875 2 600.806031 1199.59751 0.72187 0.0004337 0.70048 0.00042085 1.4223 0.00085455 600.8062802533615 73.84 0.29626 73.364 73.208 73.504 -0.47588 27 14 2 0 0 0 0.38092 1 40376 40376 22.736 8.8302 1 3594800 39498 2843 26388 26887 46304 46304 0.00569414506026078 LYVGKEEKW 9 Unmodified _LYVGKEEKW_ 0 0 0 REV__ENST00000361951.4_1_1:173793961-173794108:+|nuORF REV__ENST00000361951.4_1_1:173793961-173794108:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 576.3056640625 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 84.106 1 77.93 77.43 78.43 -6.1757 0 0 0 0.23581 1 55317 55317 28.487 3.0875 1 + 39499 25946 26389 26888 46305 46305 0.03298298648792297 LYVGKIPGF 9 Unmodified _LYVGKIPGF_ 0 0 0 ENST00000488620.5_1_9:116327559-116353744:+|nuORF ENST00000488620.5_1_9:116327559-116353744:+|nuORF ENST00000488620.5_1_9:116327559-116353744:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2925720214844 2 497.292028 992.569503 0.49408 0.0002457 0.044793 2.2275E-05 0.53887 0.00026798 497.29205215200886 67.37 0.29696 67.388 67.197 67.494 0.018036 35 14 3 0 0 0 0.06187 1 36939 36939 42.095 16.695 1 9137300 39500 14224 26390 26889 46306 46306 0.0729213631661878 LYVGKIPGF 9 Unmodified _LYVGKIPGF_ 0 0 0 ENST00000488620.5_1_9:116327559-116353744:+|nuORF ENST00000488620.5_1_9:116327559-116353744:+|nuORF ENST00000488620.5_1_9:116327559-116353744:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.2917785644531 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 76.15 1 69.975 69.475 70.475 -6.1757 0 0 0 0.17247 1 49813 49813 34.102 8.7031 1 39501 14224 26390 26889 46307 46307 0.0729213631661878 LYVISAFGF 9 Unmodified _LYVISAFGF_ 0 0 0 REV__ENSG00000279111|ENST00000623167|OR10X1 REV__ENSG00000279111|ENST00000623167|OR10X1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7760009765625 2 508.776211 1015.53787 2.191 0.0011147 -1.9403 -0.00098719 0.25069 0.00012754 508.7749608954267 94.293 0.61317 94.307 94.109 94.722 0.014244 36 22 3 0 0 0 0.12841 1 52386 52386 30.225 4.8255 1 1864400 + 39502 24677 26391 26890 46308 46308 0.030721435626674065 LYVISAFGF 9 Unmodified _LYVISAFGF_ 0 0 0 REV__ENSG00000279111|ENST00000623167|OR10X1 REV__ENSG00000279111|ENST00000623167|OR10X1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.776211 1015.53787 2.191 0.0011147 -1.9403 -0.00098719 0.25069 0.00012754 508.7749608954267 94.293 0.61317 94.307 94.109 94.722 0.014244 0 0 NaN 30.225 36 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1864400 + 39503 24677 26391 26890 0.030721435626674065 LYVITLSTS 9 Unmodified _LYVITLSTS_ 0 0 0 REV__ENSG00000242550|ENST00000238508|SERPINB10 REV__ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7840270996094 2 498.784233 995.553913 -0.14409 -7.1869E-05 0.76046 0.0003793 0.61637 0.00030744 498.7848871359258 51.314 0.2939 51.26 51.087 51.381 -0.053871 36 14 4 0 0 0 0.41742 1 27723 27723 11.64 0.81637 1 4193300 + 39504 24463 26392 26891 46309 46309 0.05595805008897514 LYVITLSTS 9 Unmodified _LYVITLSTS_ 0 0 0 REV__ENSG00000242550|ENST00000238508|SERPINB10 REV__ENSG00000242550|ENST00000238508|SERPINB10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.784233 995.553913 -0.14409 -7.1869E-05 0.76046 0.0003793 0.61637 0.00030744 498.7848871359258 51.314 0.2939 51.26 51.087 51.381 -0.053871 0.018973 -0.00021668 NaN 11.64 36 14 4 NaN NaN NaN NaN 0 NaN NaN 0 4193300 + 39505 24463 26392 26891 0.05595805008897514 LYVKRHQN 8 Unmodified _LYVKRHQN_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.298095703125 2 529.298707 1056.58286 0.18059 9.5588E-05 -0.39923 -0.00021131 -0.21864 -0.00011572 529.2982443694377 23.598 0.30628 20.771 20.549 20.855 -2.8273 31 17 2 0 0 0 0.79669 1 12781 12781 8.5933 0 1 2258500 39506 3575 26393 26892 46310 46310 0.05683387148565089 LYVLLFRFL 9 Unmodified _LYVLLFRFL_ 0 0 0 REV__nc|ENSG00000111199|Q9HBA0-2|TRPV4 REV__nc|ENSG00000111199|Q9HBA0-2|TRPV4 MSMS AL20221201_MKP_PDAC_01 4 395.2470092773438 3 395.24611 1182.7165 NaN NaN NaN NaN NaN NaN NaN 89.509 1 83.334 82.834 83.834 -6.1757 0 0 0 0.49196 1 59088 59088 16.149 3.9084 1 + 39507 18736 26394 26893 46311 46311 0.13245233201564588 LYVLQGIPL 9 Unmodified _LYVLQGIPL_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.3164672851562 2 508.312961 1014.61137 0.84402 0.00042903 3.9666 0.0020163 4.8106 0.0024453 508.31563461932427 74.253 0.24944 68.077 67.944 68.193 -6.1757 21 12 2 0 0 0 0.026094 1 48542 48542 57.471 15.377 1 11818000 39508 7868 26395 26894 46312 46312 0.10464692005132292 LYVLQVLTF 9 Unmodified _LYVLQVLTF_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3262939453125 2 548.326068 1094.63758 -0.57667 -0.0003162 1.7713 0.00097126 1.1946 0.00065505 548.3270642865083 101.25 0.10753 101.2 101.14 101.24 -0.04216 6 3 2 0 0 0 0.47846 1 56266 56266 13.508 2.3934 1 9369300 39509 851;6409 26396 26895 46313 46313 0.09404961176596771 LYVLQVLTF 9 Unmodified _LYVLQVLTF_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENST00000487336.1_1_7:37172686-37264491:-|nuORF;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3273315429688 2 548.326068 1094.63758 0.59855 0.0003282 0.084992 4.6603E-05 0.68354 0.0003748 548.3264148737181 101.76 0.093956 95.587 95.524 95.618 -6.1757 13 7 2 0 0 0 0.06294 1 68304 68304 56.541 18.39 1 61828000 39510 851;6409 26396 26895 46314 46314 0.09404961176596771 LYVLSGARTL 10 Unmodified _LYVLSGARTL_ 0 0 0 ENST00000486739.1_1_14:74206920-74256570:-|nuORF ENST00000486739.1_1_14:74206920-74256570:-|nuORF ENST00000486739.1_1_14:74206920-74256570:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8858337402344 3 364.885241 1091.63389 1.3928 0.0005082 -0.34498 -0.00012588 1.0478 0.00038232 364.88519216807236 40.571 0.30589 36.042 35.889 36.195 -4.5294 28 18 2 0 0 0 0.46514 1 24313 24313 11.518 0 1 7024800 39511 14187 26397 26896 46315 46315 0.09174291402769086 LYVMVNAKF 9 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ LYVM(1)VNAKF LYVM(64)VNAKF 0 0 1 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7937622070312 2 550.794078 1099.5736 0.2221 0.00012233 -0.45323 -0.00024964 -0.23113 -0.00012731 550.794191881163 55.116 0.31951 55.047 54.939 55.258 -0.068737 31 15 3 0 0 0 0.019303 1 29931 29931 64.236 26.085 1 9384100 39512 1121 26398 26897 46316 46316 188 0.027798577480098174 LYVMVNAKF 9 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ LYVM(1)VNAKF LYVM(55)VNAKF 0 0 1 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7944946289062 2 550.794078 1099.5736 0.039909 2.1982E-05 -0.86496 -0.00047641 -0.82505 -0.00045443 550.7940933859895 55.328 0.31842 55.259 55.138 55.456 -0.068737 25 15 2 0 0 0 0.031062 1 30030 30030 54.774 33.027 1 7466900 39513 1121 26398 26897 46317 46317 188 0.027798577480098174 LYVMVNAKF 9 Oxidation (M) _LYVM(Oxidation (M))VNAKF_ LYVM(1)VNAKF LYVM(93)VNAKF 0 0 1 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7943725585938 2 550.794078 1099.5736 1.0206 0.00056213 -0.39174 -0.00021577 0.62885 0.00034636 550.7937493266232 61.299 0.33804 55.151 54.937 55.275 -6.1478 27 16 2 0 0 0 0.0082281 1 39440 39440 92.822 44.476 1 28307000 39514 1121 26398 26897 46318 46318 188 0.027798577480098174 LYVNPLDCYN 10 Unmodified _LYVNPLDCYN_ 0 0 0 nc|ENSG00000113812|Q9H981-2|ACTR8;ENSG00000113812|ENST00000335754|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 MSMS AL20221201_MKP_PDAC_01 4 405.1916198730469 3 405.190113 1212.54851 NaN NaN NaN NaN NaN NaN NaN 91.59 1 85.414 84.914 85.914 -6.1757 0 0 0 0.92825 1 60551 60551 3.5871 0.74377 1 39515 3005 26399 26898 46319 46319 -0.04926241845214463 LYVNSEKQ 8 Unmodified _LYVNSEKQ_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.26611328125 2 490.756007 979.497461 0.11002 5.3995E-05 2.2131 0.0010861 2.3231 0.0011401 490.7569069281362 32.106 0.20621 32.135 31.988 32.194 0.029743 14 8 2 0 0 0 8.7369 1 16821 16821 7.2892 0 1 1994800 39516 7311 26400 26899 46320 46320 0.006891771722393969 LYVPQAVR 8 Unmodified _LYVPQAVR_ 0 0 0 REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2798156738281 2 473.279452 944.544351 -0.34912 -0.00016523 1.7637 0.00083471 1.4146 0.00066948 473.2805199980839 53.74 0.234 53.677 53.613 53.847 -0.063423 23 15 2 0 0 0 0.6895 1 29201 29201 18.135 0 1 4361000 + 39517 28535 26401 26900 46321 46321 0.06986081514037323 LYVPQAVR 8 Unmodified _LYVPQAVR_ 0 0 0 REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF REV__ENST00000536130.1_1_12:123718068-123718410:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 473.279452 944.544351 -0.34912 -0.00016523 1.7637 0.00083471 1.4146 0.00066948 473.2805199980839 53.74 0.234 53.677 53.613 53.847 -0.063423 -0.00059764 0.0023401 NaN 18.135 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4361000 + 39518 28535 26401 26900 0.06986081514037323 LYVPVFWDL 9 Unmodified _LYVPVFWDL_ 0 0 0 REV__ENST00000381348.4_2_22:42353689-42353893:+|nuORF REV__ENST00000381348.4_2_22:42353689-42353893:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3086547851562 2 576.310418 1150.60628 NaN NaN NaN NaN NaN NaN NaN 74.211 1 73.735 73.235 74.235 -0.47588 0 0 0 0.46757 1 40617 40617 16.942 1.0951 1 + 39519 24237 26402 26901 46322 46322 0.03700388142533484 LYVQARLCW 9 Unmodified _LYVQARLCW_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MSMS AL20221201_MKP_PDAC_01 4 576.3092041015625 2 576.305144 1150.59573 NaN NaN NaN NaN NaN NaN NaN 83.915 1 77.739 77.239 78.239 -6.1757 0 0 0 0.18911 1 55188 55188 32.117 3.6301 1 39520 5381 26403 26902 46323 46323 0.02646082216438117 LYVSPHDV 8 Unmodified _LYVSPHDV_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.4727783203125 1 929.472709 928.465432 0.98851 0.00091879 -0.39238 -0.00036471 0.59613 0.00055408 929.4724706553167 51.258 0.18077 51.258 51.167 51.348 0 13 7 2 0 0 0 0.5953 1 28288 28288 26.341 1.6674 1 1800200 39521 685 26404 26903 46324 46324 -0.0016619051090174253 LYVSSELMV 9 Unmodified _LYVSSELMV_ 0 0 0 REV__ENSG00000166111|ENST00000610966|SVOP REV__ENSG00000166111|ENST00000610966|SVOP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.314208984375 2 520.770268 1039.52598 1.2831 0.00066819 1.4074 0.00073294 2.6905 0.0014011 520.768986605698 95.286 0.17587 89.11 89.004 89.18 -6.1757 11 9 2 0 0 0 0.19298 1 63051 63051 8.5933 3.8373 1 4813300 + 39522 22083 26405 26904 46325 46325 0.007801587571748314 LYVVDLKKF 9 Unmodified _LYVVDLKKF_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1 ENSG00000102595|ENST00000376747|UGGT2;ENSG00000136731|ENST00000259253|UGGT1 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.896484375 3 375.561987 1123.66413 0.75278 0.00028271 -0.21128 -7.9349E-05 0.5415 0.00020337 375.56183509578494 58.07 0.2581 58.004 57.852 58.111 -0.066036 31 12 3 0 0 0 0.171 1 31597 31597 26.021 17.044 1 13305000 39523 2056;4850 26406 26905 46326 46326 0.10724650067936636 LYVVHPTSF 9 Unmodified _LYVVHPTSF_ 0 0 0 nc|ENSG00000241484|P85298|ARHGAP8;ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF nc|ENSG00000241484|P85298|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7838745117188 2 531.784567 1061.55458 0.41643 0.00022145 -0.23736 -0.00012622 0.17908 9.523E-05 531.7844700593951 53.627 0.25399 53.175 53.046 53.3 -0.45173 29 12 3 0 0 0 0.095405 1 29012 29012 34.102 17.16 1 8981000 39524 16570 26407 26906 46327 46327 0.026266444486054752 LYVVHPTSF 9 Unmodified _LYVVHPTSF_ 0 0 0 nc|ENSG00000241484|P85298|ARHGAP8;ENSG00000241484|ENST00000356099|ARHGAP8;nc|ENSG00000241484|P85298-3|ARHGAP8;nc|ENSG00000241484|P85298-2|ARHGAP8;nc|ENSG00000241484|P85298-5|ARHGAP8;ENST00000460809.5_1_22:45182338-45244945:+|nuORF nc|ENSG00000241484|P85298|ARHGAP8 nc|ENSG00000241484|P85298|ARHGAP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7841186523438 2 531.784567 1061.55458 0.032951 1.7523E-05 0.17005 9.0429E-05 0.203 0.00010795 531.784611260004 53.275 0.28088 53.211 53.08 53.361 -0.063419 30 13 3 0 0 0 0.012148 1 28867 28867 74.423 54.008 1 4868900 39525 16570 26407 26906 46328 46328 0.026266444486054752 LYWLMLVLF 9 Unmodified _LYWLMLVLF_ 0 0 0 REV__ENST00000366955.7_1_1:214818152-214818242:+|nuORF REV__ENST00000366955.7_1_1:214818152-214818242:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.045166015625 3 399.896201 1196.66677 -0.19988 -7.9931E-05 1.3455 0.00053806 1.1456 0.00045813 399.8965198871743 33.005 0.20338 33.035 32.937 33.14 0.029743 20 8 3 0 0 0 0.21767 1 17407 17407 2.9952 0 1 1304000 + 39526 25969 26408 26907 46329 46329 0.07630782201226793 LYWLYWQDWFR 11 Unmodified _LYWLYWQDWFR_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2727661132812 3 559.273388 1674.79833 0.59843 0.00033469 -1.5586 -0.00087168 -0.96015 -0.00053699 559.2726108455457 27.711 0.26633 27.741 27.619 27.885 0.029564 37 11 5 0 0 0 0.74046 1 14379 14379 0.45452 0 1 33712000 + 39527 29733 26409 26908 46330 46330 -0.012073161773287211 LYWLYWQDWFR 11 Unmodified _LYWLYWQDWFR_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MSMS AL20221201_MKP_PDAC_01 4 838.4055786132812 2 838.406444 1674.79833 NaN NaN NaN NaN NaN NaN NaN 90.856 1 84.68 84.18 85.18 -6.1757 0 0 0 0.94337 1 60041 60041 0 0 1 + 39528 29733 26409 26908 46331 46331 -0.012073161773287211 LYWNRPGI 8 Unmodified _LYWNRPGI_ 0 0 0 ENST00000290158.8_1_17:45755717-45757437:+|nuORF ENST00000290158.8_1_17:45755717-45757437:+|nuORF ENST00000290158.8_1_17:45755717-45757437:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7776794433594 2 509.777077 1017.5396 0.67349 0.00034333 0.69939 0.00035653 1.3729 0.00069986 509.7778111409022 80.4 0.5011 79.91 79.533 80.034 -0.48932 27 19 2 0 0 0 0.80624 1 44089 44089 2.8892 0 1 353890 39529 11461 26410 26909 46332 46332 0.03153197371273109 LYWPPVDE 8 Unmodified _LYWPPVDE_ 0 0 0 REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF;REV__nc|ENSG00000170482|Q9UHI7-3|SLC23A1 REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.747802734375 2 509.74765 1017.48075 0.18577 9.4693E-05 -0.30419 -0.00015506 -0.11842 -6.0365E-05 509.7475939008678 91.907 0.38623 91.426 91.269 91.655 -0.48092 58 21 3 0 0 0 0.67481 1 50293 50293 19.439 1.304 1 2885000 + 39530 17828;22487 26411 26910 46333 46333 -0.027293237137200776 LYWPTHYEVYF 11 Unmodified _LYWPTHYEVYF_ 0 0 0 REV__nc|ENSG00000109572|P51790-5|CLCN3 REV__nc|ENSG00000109572|P51790-5|CLCN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 759.8634033203125 2 759.358628 1516.7027 2.3134 0.0017567 0.35986 0.00027326 2.6733 0.00203 759.8609242112885 95.411 0.20998 95.415 95.322 95.532 0.004158 11 7 2 0 0 0 0.30049 1 53032 53032 6.2058 3.2105 1 2109300 + 39531 18663 26412 26911 46334 46334 -0.034980890882252424 LYWRQWNSL 9 Unmodified _LYWRQWNSL_ 0 0 0 ENST00000416538.5_1_2:136511720-136511816:+|nuORF ENST00000416538.5_1_2:136511720-136511816:+|nuORF ENST00000416538.5_1_2:136511720-136511816:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5531311035156 3 422.552374 1264.63529 0.14691 6.2078E-05 1.1396 0.00048153 1.2865 0.00054361 422.55281399994243 28.361 0.30745 28.39 28.262 28.569 0.029564 44 12 5 0 0 0 0.32871 1 14737 14737 15.248 4.449 1 79375000 39532 13045 26413 26912 46335 46335 0.01355925491520793 LYWRYTQWLSK 11 Unmodified _LYWRYTQWLSK_ 0 0 0 ENST00000369578.6_1_6:87925633-87925750:+|nuORF ENST00000369578.6_1_6:87925633-87925750:+|nuORF ENST00000369578.6_1_6:87925633-87925750:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.4037475585938 2 772.406444 1542.79833 0.17724 0.00013691 -3.6978 -0.0028562 -3.5206 -0.0027193 772.4031702018434 71.155 0.13693 70.678 70.589 70.726 -0.47735 10 5 3 0 0 0 0.74157 1 38949 38949 0.35063 0 1 757720 39533 12312 26414 26913 46336 46336 0.04864683822688676 LYWSHEALF 9 Unmodified _LYWSHEALF_ 0 0 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2886962890625 2 583.287474 1164.5604 1.1724 0.00068382 -0.5612 -0.00032734 0.61116 0.00035648 583.2870266104393 71.625 0.31966 71.664 71.469 71.788 0.039024 33 14 3 0 0 0 0.062454 1 39409 39409 54.774 54.774 1 3918700 39534 2597 26415 26914 46337 46337 -0.01530257039735261 LYWSHEALF 9 Unmodified _LYWSHEALF_ 0 0 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.3298950195312 2 583.287474 1164.5604 0.9778 0.00057034 -0.52124 -0.00030403 0.45656 0.0002663 583.2872172973266 88.697 0.25883 82.521 82.292 82.551 -6.1757 21 13 2 0 0 0 0.12183 1 58521 58521 34.102 14.845 1 9529100 39535 2597 26415 26914 46338 46338 -0.01530257039735261 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8891906738281 3 411.889097 1232.64546 -0.41397 -0.00017051 -0.19132 -7.8804E-05 -0.60529 -0.00024931 411.8890265520758 31.884 0.62912 31.914 31.522 32.151 0.030106 89 28 5 0 0 0 0.014417 2 16658 16658;16761 55.235 43.717 1 273980000 39536 10455 26416 26915 46339;46340 46339 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3278198242188 2 617.330008 1232.64546 0.018705 1.1547E-05 -1.1051 -0.00068224 -1.0864 -0.00067069 617.3291903403056 31.865 0.21642 31.896 31.753 31.969 0.030104 14 9 2 0 0 0 0.011671 1 16708 16708 75.761 49.493 1 5471800 39537 10455 26416 26915 46341 46341 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8898315429688 3 411.889097 1232.64546 0.8841 0.00036415 -0.0064453 -2.6547E-06 0.87766 0.0003615 411.889066102048 35.473 0.51241 31.28 31.057 31.57 -4.1928 127 31 5 0 0 0 0.06294 3 20491 20491;20630;20762 38.615 30.669 1 508830000 39538 10455 26416 26915 46342;46343;46344 46342 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3302001953125 2 617.330008 1232.64546 0.5328 0.00032892 0.15076 9.3069E-05 0.68357 0.00042199 617.3301043953766 35.479 0.3848 31.286 31.143 31.527 -4.1928 64 23 4 0 0 0 0.0059585 2 20661 20531;20661 114.65 84.013 1 47730000 39539 10455 26416 26915 46345;46346 46346 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8897094726562 3 411.889097 1232.64546 0.94126 0.00038769 -0.88367 -0.00036397 0.057591 2.3721E-05 411.8888151318093 67.341 0.62387 61.165 60.681 61.305 -6.1757 52 34 2 0 0 0 0.032796 3 43762 43631;43762;43900 42.312 28.698 1 22356000 39540 10455 26416 26915 46347;46348;46349 46348 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8895263671875 3 411.889097 1232.64546 0.92534 0.00038114 -0.40508 -0.00016685 0.52026 0.00021429 411.8888704982974 68.467 1.5073 62.291 61.217 62.725 -6.1757 183 83 3 0 0 0 0.047788 7 44191 44032;44191;44333;44485;44612;44740;44875 42.312 32.548 1 47325000 39541 10455 26416 26915 46350;46351;46352;46353;46354;46355;46356 46351 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8887329101562 3 411.889097 1232.64546 1.1969 0.000493 -0.097811 -4.0287E-05 1.0991 0.00045271 411.8889901152994 68.925 0.45364 62.749 62.592 63.045 -6.1757 51 24 3 0 0 0 0.1685 2 45132 44997;45132 19.626 11.681 1 42560000 39542 10455 26416 26915 46357;46358 46358 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20221201_MKP_PDAC_01 4 411.8897399902344 3 411.889097 1232.64546 NaN NaN NaN NaN NaN NaN NaN 66.3 1 60.124 59.624 60.624 -6.1757 0 0 0 0.025332 1 43115 43115 57.249 40.975 1 39543 10455 26416 26915 46359 46359 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20221201_MKP_PDAC_01 4 411.8894958496094 3 411.889097 1232.64546 NaN NaN NaN NaN NaN NaN NaN 66.495 1 60.319 59.819 60.819 -6.1757 0 0 0 0.18351 1 43252 43252 30.703 24.469 1 39544 10455 26416 26915 46360 46360 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20221201_MKP_PDAC_01 4 411.8887023925781 3 411.889097 1232.64546 NaN NaN NaN NaN NaN NaN NaN 66.744 1 60.569 60.069 61.069 -6.1757 0 0 0 0.049786 1 43426 43426 46.022 28.159 1 39545 10455 26416 26915 46361 46361 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20221201_MKP_PDAC_01 4 411.889404296875 3 411.889097 1232.64546 NaN NaN NaN NaN NaN NaN NaN 69.325 1 63.15 62.65 63.65 -6.1757 0 0 0 0.12343 1 45277 45277 30.703 18.476 1 39546 10455 26416 26915 46362 46362 0.03844533216738455 LYWSHPRKF 9 Unmodified _LYWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20221201_MKP_PDAC_01 4 411.8891296386719 3 411.889097 1232.64546 NaN NaN NaN NaN NaN NaN NaN 69.527 1 63.351 62.851 63.851 -6.1757 0 0 0 0.19623 1 45409 45409 23.801 11.626 1 39547 10455 26416 26915 46363 46363 0.03844533216738455 LYWSHSVSAQL 11 Unmodified _LYWSHSVSAQL_ 0 0 0 REV__ENST00000327574.4_1_21:45148849-45152130:+|nuORF REV__ENST00000327574.4_1_21:45148849-45152130:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8879089355469 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 46.461 1 46.428 45.928 46.928 -0.033417 0 0 0 0.93933 1 24997 24997 1.2148 0.25256 1 + 39548 25571 26417 26916 46364 46364 0.007201845634881465 LYWTDWGDHS 10 Unmodified _LYWTDWGDHS_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MSMS AL20221201_MKP_PDAC_01 4 427.1835327148438 3 427.184127 1278.53055 NaN NaN NaN NaN NaN NaN NaN 92.721 1 86.545 86.045 87.045 -6.1757 0 0 0 0.7417 1 61327 61327 8.9762 2.3528 1 39549 3705 26418 26917 46365 46365 -0.09757240775707032 LYWWVELK 8 Unmodified _LYWWVELK_ 0 0 0 REV__nc|ENSG00000080345|Q5UIP0-2|RIF1 REV__nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8096313476562 2 568.810585 1135.60662 0.23274 0.00013239 0.70955 0.0004036 0.94229 0.00053599 568.8115007457437 39.797 0.36398 39.5 39.371 39.735 -0.29716 38 17 3 0 0 0 0.50673 1 20997 20997 34.187 2.919 1 5066600 + 39550 17663 26419 26918 46366 46366 0.04423807862372087 LYYCFYPPH 9 Unmodified _LYYCFYPPH_ 0 0 0 REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF REV__ENST00000356384.4_1_9:137328607-137328931:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.248779296875 2 601.770603 1201.52665 -0.069668 -4.1924E-05 2.7947 0.0016817 2.725 0.0016398 602.2742820620365 78.16 0.28709 78.16 78.004 78.291 0 20 11 2 0 0 0 0.21798 1 43393 43393 2.3027 0.4585 1 555280 + 39551 25825 26420 26919 46367 46367 -0.06605001803131927 LYYDAIWHF 9 Unmodified _LYYDAIWHF_ 0 0 0 nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2951049804688 2 614.295299 1226.57605 0.60084 0.0003691 0.73616 0.00045222 1.337 0.00082131 614.2953736105792 86.716 0.37748 86.213 86.02 86.398 -0.50318 45 14 4 0 0 0 0.094149 2 47404 47404;47498 38.151 25.62 1 6844900 39552 7317 26421 26920 46368;46369 46368 -0.02817970522687574 LYYDAIWHF 9 Unmodified _LYYDAIWHF_ 0 0 0 nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.2957763671875 2 614.295299 1226.57605 -0.012682 -7.7904E-06 -0.38774 -0.00023819 -0.40042 -0.00024598 614.2951411244362 86.092 0.28382 86.154 85.996 86.28 0.061646 41 18 3 0 0 0 0.013041 2 47665 47665;47823 81.864 45.82 1 190630000 39553 7317 26421 26920 46370;46371 46370 -0.02817970522687574 LYYDAIWHF 9 Unmodified _LYYDAIWHF_ 0 0 0 nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 nc|ENSG00000165272|Q92482-2|AQP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.295166015625 2 614.295299 1226.57605 0.76971 0.00047283 -0.21789 -0.00013385 0.55182 0.00033898 614.2950876568527 98.533 0.24059 92.358 92.237 92.478 -6.1757 59 17 5 0 0 0 0.028475 1 65325 65325 63.563 45.416 1 1680499999.9999998 39554 7317 26421 26920 46372 46372 -0.02817970522687574 LYYDLYALR 9 Unmodified _LYYDLYALR_ 0 0 0 REV__nc|ENSG00000136869|O00206-3|TLR4 REV__nc|ENSG00000136869|O00206-3|TLR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.31591796875 2 595.316232 1188.61791 0.072946 4.3426E-05 -0.48046 -0.00028602 -0.40751 -0.0002426 595.3159730878016 38.933 0.28595 38.944 38.82 39.106 0.011456 34 13 3 0 0 0 0.53666 1 20800 20800 5.2307 0 1 15009000 + 39555 20190 26422 26921 46373 46373 0.03114585165826611 LYYDRDSNI 9 Unmodified _LYYDRDSNI_ 0 0 0 ENSG00000175189|ENST00000309668|INHBC ENSG00000175189|ENST00000309668|INHBC ENSG00000175189|ENST00000309668|INHBC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7752685546875 2 579.774928 1157.5353 NaN NaN NaN NaN NaN NaN NaN 66.848 1 66.365 65.865 66.865 -0.48323 0 0 0 0.7453 1 36514 36514 7.9102 1.187 1 39556 8490 26423 26922 46374 46374 -0.03716356632935458 LYYHTANDF 9 Unmodified _LYYHTANDF_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8093872070312 2 572.258914 1142.50327 0.5638 0.00032264 2.1506 0.0012307 2.7144 0.0015533 572.2604143934609 63.126 0.2294 62.64 62.542 62.771 -0.48617 16 10 2 0 0 0 0.19205 1 34435 34435 14.838 3.198 1 1269300 + 39557 18886 26424 26923 46375 46375 -0.06227724316113381 LYYLLSGYL 9 Unmodified _LYYLLSGYL_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MSMS AL20221201_MKP_PDAC_01 4 552.8038940429688 2 552.802426 1103.5903 NaN NaN NaN NaN NaN NaN NaN 75.97 1 69.794 69.294 70.294 -6.1757 0 0 0 0.23581 1 49693 49693 28.487 5.3384 1 + 39558 21275 26425 26924 46376 46376 0.04264681905624457 LYYQTNYLL 9 Unmodified _LYYQTNYLL_ 0 0 0 ENSG00000243279|ENST00000553851|PRAF2 ENSG00000243279|ENST00000553851|PRAF2 ENSG00000243279|ENST00000553851|PRAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5413818359375 3 397.541252 1189.60193 -0.1881 -7.4776E-05 0.82336 0.00032732 0.63527 0.00025255 397.5414012604172 41.348 0.18111 41.346 41.221 41.402 -0.0017929 14 8 2 0 0 0 0.43463 1 22089 22089 7.1017 0 1 4468200 39559 10707 26426 26925 46377 46377 0.014708789289670676 LYYREKKYKYV 11 Unmodified _LYYREKKYKYV_ 0 0 0 ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4 ENST00000499638.6_1_12:121661214-121671021:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.4314575195312 2 776.929751 1551.84495 -0.093693 -7.2793E-05 -0.42068 -0.00032684 -0.51438 -0.00039963 776.9293471945879 85.965 2.2257 86.027 85.878 88.104 0.061638 425 117 6 0 0 0 0.73506 1 48888 48888 0.96228 0.96228 1 11078000000 39560 4674 26427 26926 46378 46378 0.09110123653977098 LYYREKKYKYV 11 Unmodified _LYYREKKYKYV_ 0 0 0 ENST00000499638.6_1_12:121661214-121671021:+|nuORF;ENST00000543318.5_1_12:121659934-121671349:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4 ENST00000499638.6_1_12:121661214-121671021:+|nuORF ENST00000499638.6_1_12:121661214-121671021:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.62353515625 3 518.288926 1551.84495 -0.24024 -0.00012452 0.062361 3.2321E-05 -0.17788 -9.2194E-05 518.2891710780107 86.253 0.32769 86.315 86.173 86.5 0.061638 50 20 3 0 0 0 0.30604 1 47753 47753 0 0 1 89266000 39561 4674 26427 26926 46379 46379 0.09110123653977098 LYYRLPLR 8 Unmodified _LYYRLPLR_ 0 0 0 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 REV__nc|ENSG00000134955|Q8TED4-3|SLC37A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2237548828125 3 365.222076 1092.6444 0.02777 1.0142E-05 2.0017 0.00073105 2.0294 0.00074119 365.222481682992 28.915 0.50147 28.945 28.798 29.299 0.030104 41 20 3 0 0 0 0.63229 1 15139 15139 18.146 0 1 20412000 + 39562 20028 26428 26927 46380 46380 0.10178318847852097 LYYSFLTQ 8 Unmodified _LYYSFLTQ_ 0 0 0 ENST00000475582.5_1_2:27590224-27590551:-|nuORF ENST00000475582.5_1_2:27590224-27590551:-|nuORF ENST00000475582.5_1_2:27590224-27590551:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.2876586914062 2 517.7633 1033.51205 1.1798 0.00061084 3.9386 0.0020393 5.1184 0.0026501 517.7663982276003 61.554 0.24469 55.378 55.331 55.576 -6.1757 19 12 2 0 0 0 8.7369 1 39699 39699 13.508 3.3245 1 16181000 39563 13964 26429 26928 46381 46381 -0.0033675067961667082 LYYSTEREL 9 Unmodified _LYYSTEREL_ 0 0 0 REV__ENST00000472487.5_1_1:59122047-59122251:-|nuORF REV__ENST00000472487.5_1_1:59122047-59122251:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 587.2941284179688 2 587.292953 1172.57135 NaN NaN NaN NaN NaN NaN NaN 58.478 1 52.404 51.904 52.904 -6.0745 0 0 0 0.18351 1 37472 37472 32.786 0.4802 1 + 39564 27519 26430 26929 46382 46382 -0.00802899456061823 LYYSYRGYF 9 Unmodified _LYYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.1978454589844 3 411.197596 1230.57096 0.52822 0.0002172 0.19243 7.9126E-05 0.72065 0.00029633 411.1978398057779 83.593 0.30544 83.096 82.938 83.243 -0.49751 25 12 3 0 0 0 0.58466 1 45754 45754 1.1933 0.41681 1 782000 + 39565 187 26431 26930 46383 46383 -0.03510274385280354 LYYSYRGYF 9 Unmodified _LYYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.29541015625 2 616.292756 1230.57096 0.65408 0.0004031 2.5519 0.0015727 3.206 0.0019758 616.2953015214825 83.636 0.50179 83.138 83.028 83.53 -0.49751 33 20 3 0 0 0 0.1773 1 45768 45768 25.399 0.72543 1 2547300 + 39566 187 26431 26930 46384 46384 -0.03510274385280354 LYYSYRGYF 9 Unmodified _LYYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2938842773438 2 616.292756 1230.57096 0.90785 0.0005595 0.61922 0.00038162 1.5271 0.00094112 616.293097684428 83.035 0.36192 83.097 82.894 83.256 0.062004 34 13 3 0 0 0 0.10734 1 45919 45919 32.305 3.2239 1 16121000 + 39567 187 26431 26930 46385 46385 -0.03510274385280354 LYYSYRGYF 9 Unmodified _LYYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2939453125 2 616.292756 1230.57096 1.336 0.00082335 0.26511 0.00016339 1.6011 0.00098674 616.2932328627489 97.456 0.12801 91.281 91.221 91.349 -6.1757 10 6 2 0 0 0 0.10734 1 64596 64596 32.305 3.2239 1 9417200 + 39568 187 26431 26930 46386 46386 -0.03510274385280354 LYYSYRGYF 9 Unmodified _LYYSYRGYF_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.197596 1230.57096 0.45845 0.00018851 0.84655 0.0003481 1.305 0.00053661 411.19780010126027 83.051 0.26376 83.113 82.969 83.232 0.062004 0.0084204 0.0005596 NaN 1.1933 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3551300 + 39569 187 26431 26930 -0.03510274385280354 LYYTRFQLL 9 Unmodified _LYYTRFQLL_ 0 0 0 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.83984375 2 608.839874 1215.66519 0.37919 0.00023087 0.29279 0.00017826 0.67198 0.00040913 608.8397691232816 74.712 0.25937 74.758 74.616 74.876 0.045967 20 11 2 0 0 0 0.025842 1 41179 41179 57.722 32.323 1 2656400 39570 6818 26432 26931 46387 46387 0.0659886443686446 LYYTSFSDP 9 Unmodified _LYYTSFSDP_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1757507324219 3 364.834324 1091.48114 NaN NaN NaN NaN NaN NaN NaN 81.059 1 80.566 80.066 81.066 -0.49247 0 0 0 0.83049 1 44387 44387 2.2828 1.0679 1 39571 10689 26433 26932 46388 46388 -0.06093948784496206 LYYVLHIT 8 Unmodified _LYYVLHIT_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7624206542969 2 511.289485 1020.56442 0.55103 0.00028174 3.7034 0.0018935 4.2544 0.0021752 511.2918150147733 46.619 0.37018 46.619 46.369 46.74 0 31 16 3 0 0 0 8.7369 1 25382 25382 14.582 5.9884 1 3628300 39572 9713 26434 26933 46389 46389 0.054958324539938985 LYYVVKHR 8 Unmodified _LYYVVKHR_ 0 0 0 ENST00000497495.1_1_3:112993349-112998152:+|nuORF;nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC ENST00000497495.1_1_3:112993349-112998152:+|nuORF ENST00000497495.1_1_3:112993349-112998152:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.745849609375 2 539.313826 1076.6131 0.34448 0.00018578 -0.42793 -0.00023079 -0.083456 -4.5009E-05 539.3139823244061 50.211 0.16791 50.211 50.114 50.282 0 9 7 2 0 0 0 8.7369 1 27631 27631 6.3541 2.0249 1 655670 39573 5654 26435 26934 46390 46390 0.0778574581374869 LYYYKHYL 8 Unmodified _LYYYKHYL_ 0 0 0 ENST00000490134.1_1_9:108337313-108359001:+|nuORF;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN ENST00000490134.1_1_9:108337313-108359001:+|nuORF ENST00000490134.1_1_9:108337313-108359001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.201904296875 3 388.20257 1161.58588 -0.0053782 -2.0878E-06 2.0083 0.00077963 2.0029 0.00077754 388.20287527107956 37.663 0.35525 37.663 37.51 37.865 0 56 17 4 0 0 0 0.71616 1 20024 20024 11.64 7.2341 1 10989000 39574 2454 26436 26935 46391 46391 0.011552174827102135 MAADDVEEY 9 Oxidation (M) _M(Oxidation (M))AADDVEEY_ M(1)AADDVEEY M(44)AADDVEEY 0 0 1 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.703125 2 529.70278 1057.39101 NaN NaN NaN NaN NaN NaN NaN 29.281 1 29.281 28.781 29.781 0 0 0 0 0.096036 1 15161 15161 44.407 29.825 1 39575 3024 26437 26936 46392 46392 523 -0.1353936617524596 MAADDVEEY 9 Unmodified _MAADDVEEY_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MSMS AL20221201_MKP_PDAC_01 4 521.7048950195312 2 521.705322 1041.39609 NaN NaN NaN NaN NaN NaN NaN 42.791 1 38.106 37.606 38.606 -4.6846 0 0 0 0.33856 1 25893 25893 23.148 7.3012 1 39576 3024 26437 26937 46393 46393 -0.12295062312614391 MAAKEIEKY 9 Unmodified _MAAKEIEKY_ 0 0 0 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5235290527344 3 361.523204 1081.54778 0.50697 0.00018328 1.0191 0.00036844 1.5261 0.00055172 361.5232933232282 25.61 0.43436 22.727 22.387 22.822 -2.8831 48 23 3 0 0 0 0.15471 2 14065 13950;14065 26.021 14.526 1 11341000 39577 4038 26438 26938 46394;46395 46395 0.01026963505751155 MAAKEIEKY 9 Unmodified _MAAKEIEKY_ 0 0 0 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 ENSG00000127954|ENST00000380079|STEAP4 MSMS AL20221201_MKP_PDAC_01 4 541.7813110351562 2 541.781167 1081.54778 NaN NaN NaN NaN NaN NaN NaN 25.563 1 22.68 22.18 23.18 -2.8831 0 0 0 0.10415 1 14005 14005 42.312 24.166 1 39578 4038 26438 26938 46396 46396 0.01026963505751155 MAAKILEEF 9 Oxidation (M) _M(Oxidation (M))AAKILEEF_ M(1)AAKILEEF M(42)AAKILEEF 0 0 1 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2761840820312 2 534.275718 1066.53688 1.0049 0.00053692 -0.5904 -0.00031544 0.41454 0.00022148 534.2757496327546 54.439 0.58397 54.439 54.246 54.83 0 92 25 5 0 0 0 0.06294 1 30283 30283 41.84 23.705 1 23992000 39579 7146 26439 26939 46397 46397 1233 0.006275611314322305 MAAKILEEF 9 Unmodified _MAAKILEEF_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.278564453125 2 526.27826 1050.54197 0.64325 0.00033853 0.98418 0.00051795 1.6274 0.00085648 526.2782599624885 67.96 0.30601 61.785 61.618 61.924 -6.1757 24 17 2 0 0 0 0.040683 1 44348 44348 49.554 30.297 1 11913000 39580 7146 26439 26940 46398 46398 0.018718649940410614 MAAKQPPPLM 10 Unmodified _MAAKQPPPLM_ 0 0 0 ENSG00000175274|ENST00000525680|TP53I11 ENSG00000175274|ENST00000525680|TP53I11 ENSG00000175274|ENST00000525680|TP53I11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2848510742188 2 542.288105 1082.56166 0.51325 0.00027833 -1.1119 -0.00060296 -0.59862 -0.00032463 542.7889526956976 46.975 1.1802 41.895 41.393 42.573 -5.0805 286 140 5 0 0 0 0.44373 1 29013 29013 19.257 4.6753 1 171840000 39581 8504 26440 26941 46399 46399 0.023679177331587198 MACEPSHL 8 Oxidation (M) _M(Oxidation (M))ACEPSHL_ M(1)ACEPSHL M(54)ACEPSHL 0 0 1 ENST00000445118.6_1_1:790068-790143:+|nuORF ENST00000445118.6_1_1:790068-790143:+|nuORF ENST00000445118.6_1_1:790068-790143:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.1896057128906 2 452.188588 902.362623 0.82041 0.00037098 -0.33476 -0.00015137 0.48565 0.0002196 452.1886391445157 49.722 0.2773 49.722 49.606 49.883 0 25 12 3 0 0 0 0.31612 1 27388 27388 53.576 6.6547 1 2485100 39582 13448 26441 26942 46400 46400 1763 -0.09246342565506893 MACSPCEGLYF 11 Unmodified _MACSPCEGLYF_ 0 0 0 nc|ENSG00000183723|Q8IZR5-3|CMTM4;ENSG00000183723|ENST00000394106|CMTM4;nc|ENSG00000183723|Q8IZR5|CMTM4 nc|ENSG00000183723|Q8IZR5-3|CMTM4 nc|ENSG00000183723|Q8IZR5-3|CMTM4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.3382568359375 2 610.74287 1219.47119 0.65484 0.00039994 0.63142 0.00038563 1.2863 0.00078557 610.7432927259999 67.079 0.58938 60.903 60.628 61.217 -6.1757 46 32 2 0 0 0 0.29564 1 43881 43881 9.3831 7.0804 1 17155000 39583 9182 26442 26943 46401 46401 -0.12976919377410923 MADDMLKRGIF 11 Unmodified _MADDMLKRGIF_ 0 0 0 ENSG00000100116|ENST00000248924|GCAT;nc|ENSG00000100116|O75600-2|GCAT ENSG00000100116|ENST00000248924|GCAT ENSG00000100116|ENST00000248924|GCAT MSMS AL20221201_MKP_PDAC_01 4 432.8857727050781 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 13.3 1 10.818 10.318 11.318 -2.482 0 0 0 0.94337 1 6740 6740 0.094841 0 1 39584 1758 26443 26944 46402 46402 0.0006205547374520393 MADDYSDSLI 10 Unmodified _MADDYSDSLI_ 0 0 0 ENSG00000023330|ENST00000484952|ALAS1 ENSG00000023330|ENST00000484952|ALAS1 ENSG00000023330|ENST00000484952|ALAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.240234375 2 565.239529 1128.46451 NaN NaN NaN NaN NaN NaN NaN 56.661 1 56.661 56.161 57.161 0 0 0 0 0.92825 1 31514 31514 6.7232 0.36906 1 39585 541 26444 26945 46403 46403 -0.0945881773277506 MAEMGVHSVAY 11 Oxidation (M) _M(Oxidation (M))AEMGVHSVAY_ M(1)AEMGVHSVAY M(50)AEM(-50)GVHSVAY 0 0 1 ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1 ENST00000358711.7_1_20:62571331-62572425:-|nuORF ENST00000358711.7_1_20:62571331-62572425:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.7647705078125 2 605.765191 1209.51583 0.93304 0.00056521 -0.47058 -0.00028506 0.46247 0.00028015 605.7646835952638 40.97 0.18818 36.362 36.244 36.432 -4.6079 16 11 2 0 0 0 0.0010665 1 24548 24548 82.529 62.076 2 5109400 39586 10072 26445 26946 46404 46404 1635 -0.08054772239688646 MAEMGVHSVAY 11 Unmodified _MAEMGVHSVAY_ 0 0 0 ENST00000358711.7_1_20:62571331-62572425:-|nuORF;nc|ENSG00000198276|Q9NWZ5-4|UCKL1;ENSG00000198276|ENST00000354216|UCKL1 ENST00000358711.7_1_20:62571331-62572425:-|nuORF ENST00000358711.7_1_20:62571331-62572425:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 597.7673950195312 2 597.767734 1193.52091 NaN NaN NaN NaN NaN NaN NaN 47.134 1 42.053 41.553 42.553 -5.0805 0 0 0 0.00064334 1 29222 29222 82.529 40.69 1 39587 10072 26445 26947 46405 46405 -0.06810468377079815 MAEQCLAVEAL 11 Unmodified _MAEQCLAVEAL_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1904602050781 3 393.191237 1176.55188 0.18008 7.0806E-05 -1.7184 -0.00067565 -1.5383 -0.00060484 393.19051056801993 48.633 0.15844 48.59 48.516 48.674 -0.04369 12 7 2 0 0 0 0.71341 1 26260 26260 1.2148 0.021489 1 1262500 39588 2992 26446 26948 46406 46406 -0.029333150628644944 MAFASIYKL 9 Oxidation (M) _M(Oxidation (M))AFASIYKL_ M(1)AFASIYKL M(54)AFASIYKL 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2799072265625 2 530.280803 1058.54705 0.31599 0.00016756 -1.2205 -0.0006472 -0.9045 -0.00047964 530.2800740965628 60.366 0.22502 60.322 60.211 60.436 -0.043507 17 10 2 0 0 0 0.032796 1 32927 32927 53.833 32.086 1 11128000 39589 7097 26447 26949 46407 46407 1221 0.020121688566632656 MAFIEQRNCI 10 Unmodified _MAFIEQRNCI_ 0 0 0 HCK|p.Y377C|1|0.16|ENSG00000101336|chr20:32093900-32093900|A/G|missense_variant HCK|p.Y377C|1|0.16|ENSG00000101336|chr20:32093900-32093900|A/G|missense_variant HCK|p.Y377C|1|0.16|ENSG00000101336|chr20:32093900-32093900|A/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5469665527344 3 408.866976 1223.5791 NaN NaN NaN NaN NaN NaN NaN 27.299 1 27.299 26.799 27.799 0 0 0 0 0.97044 1 14060 14060 3.8763 1.7903 1 39590 15908 26448 26950 46408 46408 -0.023747867318206772 MAFQNDVYEW 10 Unmodified _MAFQNDVYEW_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.7774047851562 2 651.776613 1301.53867 0.43797 0.00028546 -0.61826 -0.00040297 -0.18028 -0.0001175 651.7766146927561 82.491 0.38402 76.315 76.106 76.49 -6.1757 51 21 3 0 0 0 0.02987 2 54231 54104;54231 68.081 48.719 1 29240000 39591 1685 26449 26951 46409;46410 46410 -0.10003429850598877 MAFQNDVYEW 10 Oxidation (M) _M(Oxidation (M))AFQNDVYEW_ M(1)AFQNDVYEW M(68)AFQNDVYEW 0 0 1 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MSMS AL20221201_MKP_PDAC_01 4 659.77587890625 2 659.774071 1317.53359 NaN NaN NaN NaN NaN NaN NaN 72.219 1 66.044 65.544 66.544 -6.1757 0 0 0 0.014371 1 47257 47257 68.081 49.934 1 39592 1685 26449 26952 46411 46411 286 -0.11247733713230446 MAGDIYSVF 9 Oxidation (M) _M(Oxidation (M))AGDIYSVF_ M(1)AGDIYSVF M(54)AGDIYSVF 0 0 1 ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7311706542969 2 509.731143 1017.44773 0.19161 9.7667E-05 -0.26836 -0.00013679 -0.076751 -3.9122E-05 509.7303691140377 70.186 0.37842 70.186 70.07 70.449 0 49 22 3 0 0 0 0.03327 1 39159 39159 53.576 35.441 1 3441000 39593 5887 26450 26953 46412 46412 1056 -0.060292738280509184 MAGDIYSVF 9 Oxidation (M) _M(Oxidation (M))AGDIYSVF_ M(1)AGDIYSVF M(51)AGDIYSVF 0 0 1 ENSG00000147872|ENST00000276914|PLIN2;ENST00000464326.1_1_9:19108613-19116611:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7313232421875 2 509.731143 1017.44773 0.65562 0.00033419 0.078675 4.0103E-05 0.73429 0.00037429 509.7309818413474 77.672 0.5218 71.496 71.309 71.831 -6.1757 51 29 2 0 0 0 0.038285 1 50883 50883 50.855 26.181 1 12038000 39594 5887 26450 26953 46413 46413 1056 -0.060292738280509184 MAGDWKTTF 9 Unmodified _MAGDWKTTF_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3 ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7442016601562 2 528.744585 1055.47462 1.1378 0.00060161 -2.7258 -0.0014413 -1.588 -0.00083964 528.7432634026791 55.083 0.30267 49.162 49.031 49.334 -5.9211 41 18 4 0 0 0 0.024189 1 35032 35032 59.368 21.394 1 18399000 39595 9829;10450;9920 26451 26954 46414 46414 -0.05090165216893183 MAGSIISSY 9 Oxidation (M) _M(Oxidation (M))AGSIISSY_ M(1)AGSIISSY M(54)AGSIISSY 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7230224609375 2 472.723318 943.432083 NaN NaN NaN NaN NaN NaN NaN 45.743 1 45.743 45.243 46.243 0 0 0 0 0.060495 1 24956 24956 53.576 30.427 1 39596 3224 26452 26955 46415 46415 577 -0.04189560345105292 MAHADPTEL 9 Oxidation (M) _M(Oxidation (M))AHADPTEL_ M(1)AHADPTEL M(71)AHADPTEL 0 0 1 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7240905761719 2 500.723849 999.433146 -0.15371 -7.6965E-05 0.32449 0.00016248 0.17078 8.5515E-05 500.72390733826046 25.586 0.35199 25.586 25.427 25.779 0 45 16 4 0 0 0 0.013472 1 13112 13112 70.716 19.86 1 4091700 39597 4231 26453 26956 46416 46416 748 -0.06659345976231634 MAHADPTEL 9 Unmodified _MAHADPTEL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.253173828125 2 492.726392 983.438231 0.94616 0.0004662 0.66925 0.00032976 1.6154 0.00079596 492.72688859231914 34.841 0.39823 30.746 30.518 30.916 -4.0951 52 23 3 0 0 0 0.11012 1 20148 20148 36.044 10.645 1 18367000 39598 4231 26453 26957 46417 46417 -0.05415042113622803 MAHAPRLS 8 Unmodified _MAHAPRLS_ 0 0 0 ENST00000477923.1_1_10:135093272-135094982:-|nuORF ENST00000477923.1_1_10:135093272-135094982:-|nuORF ENST00000477923.1_1_10:135093272-135094982:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2607116699219 2 441.734354 881.454156 1.2537 0.0005538 4.0943 0.0018086 5.348 0.0023624 441.73495152550714 19.984 0.19877 17.328 17.205 17.404 -2.6564 13 10 2 0 0 0 8.7369 1 10623 10623 7.2892 0 1 845060 39599 14002 26454 26958 46418 46418 0.008687089139584714 MAHSFGESY 9 Oxidation (M) _M(Oxidation (M))AHSFGESY_ M(1)AHSFGESY M(89)AHSFGESY 0 0 1 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.708251953125 2 522.708199 1043.40185 -0.11818 -6.1774E-05 -0.48892 -0.00025556 -0.6071 -0.00031734 522.7081145585677 25.893 0.35166 25.893 25.695 26.047 0 50 16 4 0 0 0 0.0086179 2 13327 13228;13327 89.427 41.081 1 13201000 39600 5344 26455 26959 46419;46420 46420 983 -0.11811919010301608 MAHSFGESY 9 Unmodified _MAHSFGESY_ 0 0 0 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6;nc|ENSG00000141524|Q7Z403-2|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7112426757812 2 514.710742 1027.40693 1.2242 0.0006301 -0.56622 -0.00029144 0.65797 0.00033866 514.7105313914508 34.05 0.4822 30.065 29.824 30.306 -3.9853 55 26 3 0 0 0 0.010877 2 19512 19512;19635 77.984 25.716 1 36055000 39601 5344 26455 26960 46421;46422 46421 -0.1056761514767004 MAHTGVIFF 9 Oxidation (M) _M(Oxidation (M))AHTGVIFF_ M(1)AHTGVIFF M(51)AHTGVIFF 0 0 1 ENST00000497336.1_1_X:48316945-48325440:-|nuORF;nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 ENST00000497336.1_1_X:48316945-48325440:-|nuORF;nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7582397460938 2 519.757495 1037.50044 NaN NaN NaN NaN NaN NaN NaN 66.246 1 65.763 65.263 66.263 -0.48323 0 0 0 0.071041 1 36170 36170 50.855 27.707 1 39602 504;14397 26456 26961 46423 46423 71 -0.01681270974609106 MAHTGVIFF 9 Oxidation (M) _M(Oxidation (M))AHTGVIFF_ M(1)AHTGVIFF M(51)AHTGVIFF 0 0 1 ENST00000497336.1_1_X:48316945-48325440:-|nuORF;nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 ENST00000497336.1_1_X:48316945-48325440:-|nuORF;nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.757568359375 2 519.757495 1037.50044 0.87216 0.00045331 -0.61422 -0.00031924 0.25794 0.00013407 519.7571233657405 65.884 0.34233 65.894 65.708 66.051 0.0095673 30 16 2 0 0 0 0.038285 1 36086 36086 50.855 29.108 1 7559500 39603 504;14397 26456 26961 46424 46424 71 -0.01681270974609106 MAICLSTSCL 10 Unmodified _MAICLSTSCL_ 0 0 0 REV__ENST00000225983.10_1_17:42157832-42158210:-|nuORF REV__ENST00000225983.10_1_17:42157832-42158210:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7452392578125 2 521.242506 1040.47046 1.0836 0.0005648 1.2739 0.000664 2.3574 0.0012288 521.2431413057842 51.14 0.58847 45.491 45.134 45.722 -5.649 64 35 3 0 0 0 0.52888 1 31983 31983 14.838 3.198 1 73008000 + 39604 24789 26457 26962 46425 46425 -0.04815714026472051 MAIEAQQKF 9 Oxidation (M) _M(Oxidation (M))AIEAQQKF_ M(1)AIEAQQKF M(100)AIEAQQKF 0 0 1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.271240234375 2 541.270967 1080.52738 -0.31052 -0.00016807 0.39717 0.00021497 0.086646 4.6899E-05 541.2712314112478 28.987 0.36078 28.987 28.781 29.142 0 45 17 3 0 0 0 0.0087873 2 14937 14937;15037 103.35 61.514 1 4886900 39605 13617 26458 26963 46426;46427 46426 1765 -0.00966207154078802 MAIEAQQKF 9 Unmodified _MAIEAQQKF_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF ENST00000457761.6_1_2:172821936-172844354:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.774658203125 2 533.273509 1064.53247 1.0314 0.00055002 -3.0745 -0.0016395 -2.0431 -0.0010895 533.2718431226062 42.736 0.39161 38.051 37.885 38.277 -4.6846 50 24 3 0 0 0 0.023481 1 25811 25811 60.074 29.849 1 33889000 39606 13617 26458 26964 46428 46428 0.00278096708530029 MAISDELHY 9 Oxidation (M) _M(Oxidation (M))AISDELHY_ M(1)AISDELHY M(71)AISDELHY 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7450561523438 2 547.744782 1093.47501 0.59041 0.0003234 -0.2569 -0.00014072 0.33351 0.00018268 547.7446426029285 42.358 0.4621 42.358 42.143 42.605 0 57 22 3 0 0 0 0.013472 1 22844 22844 70.716 32.742 1 20968000 39607 1001 26459 26965 46429 46429 165 -0.06798790287689371 MAISDELHY 9 Oxidation (M) _M(Oxidation (M))AISDELHY_ M(1)AISDELHY M(110)AISDELHY 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7459106445312 2 547.744782 1093.47501 0.93532 0.00051232 0.4674 0.00025602 1.4027 0.00076833 547.7453607542544 48.435 0.52881 43.202 42.907 43.436 -5.2339 46 31 2 0 0 0 0.0077963 2 30206 30065;30206 109.63 77.324 1 21267000 39608 1001 26459 26965 46430;46431 46431 165 -0.06798790287689371 MALAVRVVY 9 Oxidation (M) _M(Oxidation (M))ALAVRVVY_ M(1)ALAVRVVY M(52)ALAVRVVY 0 0 1 ENST00000599302.1_1_19:48282024-48282069:+|nuORF;ENST00000601419.5_1_19:48281997-48284145:+|nuORF;ENST00000601048.5_2_19:48281862-48283988:+|nuORF;ENSG00000178980|ENST00000601048|SELENOW ENST00000599302.1_1_19:48282024-48282069:+|nuORF ENST00000599302.1_1_19:48282024-48282069:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.294677734375 2 519.294245 1036.57394 0.00056517 2.9349E-07 0.57315 0.00029763 0.57371 0.00029792 519.2946267942033 51.594 0.39594 51.537 51.357 51.753 -0.057095 31 19 3 0 0 0 0.03568 1 27989 27989 52.268 35.326 1 3272200 39609 8792 26460 26966 46432 46432 1482 0.05711277467889886 MALCLVGP 8 Unmodified _MALCLVGP_ 0 0 0 ENST00000477980.6_1_X:100878681-100879155:+|nuORF ENST00000477980.6_1_X:100878681-100879155:+|nuORF ENST00000477980.6_1_X:100878681-100879155:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2116088867188 2 402.211335 802.408117 NaN NaN NaN NaN NaN NaN NaN 43.804 1 43.788 43.288 44.288 -0.015667 0 0 0 0.97444 1 23483 23483 2.8892 0 1 39610 14005 26461 26967 46433 46433 -0.000990723124800752 MALDGQNIY 9 Oxidation (M) _M(Oxidation (M))ALDGQNIY_ M(1)ALDGQNIY M(67)ALDGQNIY 0 0 1 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7384643554688 2 520.739499 1039.46445 0.34915 0.00018182 -2.766 -0.0014404 -2.4169 -0.0012586 520.7380861714198 42.163 0.26817 42.163 42.011 42.279 0 20 13 2 0 0 0 0.016184 1 22816 22816 67.344 25.249 1 7431400 39611 3421 26462 26968 46434 46434 608 -0.05370772942114854 MALEDLAMF 9 Unmodified _MALEDLAMF_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF;ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENSG00000151005|ENST00000280605|TKTL2 ENSG00000163931|ENST00000462138|TKT;ENSG00000151005|ENST00000280605|TKTL2 ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.744384765625 2 520.743196 1039.47184 1.2294 0.00064021 -1.1061 -0.00057598 0.12334 6.4229E-05 520.7439418400965 100.42 0.11026 94.248 94.202 94.312 -6.1757 10 6 2 0 0 0 0.2143 1 67188 67188 21.747 0 1 16339000 39612 7097;6084 26463 26969 46435 46435 -0.04631756666049114 MALESLQTY 9 Oxidation (M) _M(Oxidation (M))ALESLQTY_ M(1)ALESLQTY M(44)ALESLQTY 0 0 1 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2551879882812 2 536.254982 1070.49541 0.69082 0.00037046 -0.54698 -0.00029332 0.14384 7.7134E-05 536.2545005391271 47.863 0.39048 47.863 47.623 48.014 0 28 18 2 0 0 0 0.052168 1 26180 26180 44.407 22.66 1 3786900 39613 7133 26464 26970 46436 46436 1229 -0.037016196278727875 MALGLALRY 9 Oxidation (M) _M(Oxidation (M))ALGLALRY_ M(1)ALGLALRY M(46)ALGLALRY 0 0 1 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2864379882812 2 512.28642 1022.55829 NaN NaN NaN NaN NaN NaN NaN 58.658 1 58.597 58.097 59.097 -0.060719 0 0 0 0.08978 1 31954 31954 46.021 24.274 1 39614 3829;16172 26465 26971 46437 46437 684 0.04790990950834839 MALQEACEAY 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))ALQEAC(Carbamidomethyl (C))EAY_ MALQEAC(1)EAY M(1)ALQEACEAY MALQEAC(54)EAY M(54)ALQEACEAY 0 1 1 ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12 ENSG00000278828|ENST00000685041|H3C10 ENSG00000278828|ENST00000685041|H3C10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2477416992188 2 601.246831 1200.47911 -0.10319 -6.204E-05 0.051374 3.0888E-05 -0.051812 -3.1152E-05 601.246691753433 41.148 0.3711 36.54 36.401 36.772 -4.6079 33 22 2 0 0 0 0.067957 1 24701 24701 53.833 36.72 1 10497000 39615 9917 26466 26972 46438 46438 906 1599 -0.11311068856275597 MALQEASEAY 10 Oxidation (M) _M(Oxidation (M))ALQEASEAY_ M(1)ALQEASEAY M(50)ALQEASEAY 0 0 1 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13 ENSG00000203852|ENST00000403683|H3C15 ENSG00000203852|ENST00000403683|H3C15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7463989257812 2 564.747521 1127.48049 -0.37664 -0.00021271 0.032503 1.8356E-05 -0.34414 -0.00019435 564.7474009617939 34.014 0.35646 34.014 33.728 34.084 0 41 17 3 0 0 0 0.085354 2 17772 17772;17881 49.933 34.086 1 4552200 39616 9164 26467 26973 46439;46440 46439 1527 -0.07815111495892779 MALQEASEAY 10 Unmodified _MALQEASEAY_ 0 0 0 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13 ENSG00000203852|ENST00000403683|H3C15 ENSG00000203852|ENST00000403683|H3C15 MSMS AL20221201_MKP_PDAC_01 4 556.7504272460938 2 556.750064 1111.48558 NaN NaN NaN NaN NaN NaN NaN 51.428 1 45.779 45.279 46.279 -5.649 0 0 0 0.40102 1 32359 32359 31.268 4.3847 1 39617 9164 26467 26974 46441 46441 -0.06570807633261211 MAMVPIYAAY 10 Unmodified _MAMVPIYAAY_ 0 0 0 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 ENSG00000142319|ENST00000270349|SLC6A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2745971679688 2 565.274664 1128.53477 1.3637 0.00077085 1.1501 0.00065012 2.5138 0.001421 565.2753040845042 47.898 1.3408 42.664 41.801 43.142 -5.2339 138 84 2 0 0 0 0.34789 1 29694 29694 24.674 1.9376 1 86492000 39618 5408 26468 26975 46442 46442 -0.0243519087803179 MANADLVKY 9 Oxidation (M) _M(Oxidation (M))ANADLVKY_ M(1)ANADLVKY M(46)ANADLVKY 0 0 1 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7589721679688 2 520.757692 1039.50083 NaN NaN NaN NaN NaN NaN NaN 33.536 1 33.536 33.036 34.036 0 0 0 0 0.090869 1 17597 17597 45.74 21.95 1 39619 5735 26469 26976 46443 46443 1039 -0.017338960454026164 MANADLVKY 9 Oxidation (M) _M(Oxidation (M))ANADLVKY_ M(1)ANADLVKY M(65)ANADLVKY 0 0 1 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2578125 2 520.757692 1039.50083 1.0631 0.0005536 -1.0542 -0.00054896 0.0089024 4.636E-06 521.2582371049938 38.122 0.30243 33.753 33.597 33.9 -4.3689 24 17 2 0 0 0 0.018061 1 22486 22486 65.474 45.059 1 10023000 39620 5735 26469 26976 46444 46444 1039 -0.017338960454026164 MANGAVIHL 9 Oxidation (M) _M(Oxidation (M))ANGAVIHL_ M(1)ANGAVIHL M(64)ANGAVIHL 0 0 1 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.24755859375 2 471.247295 940.480036 0.16026 7.5522E-05 -0.1678 -7.9074E-05 -0.0075364 -3.5515E-06 471.2471492732579 43.461 0.28143 43.461 43.323 43.605 0 24 13 2 0 0 0 0.019979 2 23679 23571;23679 63.563 29.376 1 9315700 39621 1734 26470 26977 46445;46446 46446 295 0.00741558365587025 MANGAVIHL 9 Unmodified _MANGAVIHL_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2508239746094 2 463.249837 924.485122 1.2236 0.00056683 -0.090862 -4.2092E-05 1.1327 0.00052474 463.2500192534857 53.942 0.27716 48.077 47.912 48.19 -5.8653 30 16 2 0 0 0 0.013419 1 34102 34102 70.865 27.897 1 11294000 39622 1734 26470 26978 46447 46447 0.019858622282072247 MANGPVGVLFI 11 Unmodified _MANGPVGVLFI_ 0 0 0 REV__ENSG00000134830|ENST00000595464|C5AR2 REV__ENSG00000134830|ENST00000595464|C5AR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3050537109375 2 559.307352 1116.60015 0.80395 0.00044965 -3.2383 -0.0018112 -2.4344 -0.0013616 559.3054130145773 72.462 0.24856 71.986 71.834 72.083 -0.47609 19 11 2 0 0 0 0.58219 1 39634 39634 12.241 0.60036 1 901360 + 39623 20017 26471 26979 46448 46448 0.046515466393657334 MANIPLPEY 9 Oxidation (M) _M(Oxidation (M))ANIPLPEY_ M(1)ANIPLPEY M(57)ANIPLPEY 0 0 1 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2589721679688 2 532.260068 1062.50558 0.26654 0.00014187 -2.985 -0.0015888 -2.7184 -0.0014469 532.2596719827848 62.459 0.49556 62.459 62.304 62.8 0 78 28 4 0 0 0 0.026094 1 34822 34822 57.471 34.323 1 9705000 39624 3136 26472 26980 46449 46449 555 -0.023170119026417524 MANIPLPEY 9 Oxidation (M) _M(Oxidation (M))ANIPLPEY_ M(1)ANIPLPEY M(67)ANIPLPEY 0 0 1 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2604370117188 2 532.260068 1062.50558 0.36629 0.00019496 1.162 0.00061849 1.5283 0.00081346 532.2604897381873 63.08 0.35352 62.593 62.44 62.793 -0.48617 33 16 3 0 0 0 0.016184 1 34411 34411 67.344 45.597 1 3925800 39625 3136 26472 26980 46450 46450 555 -0.023170119026417524 MANIPLPEY 9 Unmodified _MANIPLPEY_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A;ENST00000441719.5_1_2:86711112-86716803:+|nuORF ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.262939453125 2 524.26261 1046.51067 0.56863 0.00029811 -0.1358 -7.1195E-05 0.43283 0.00022692 524.262592035302 78.703 0.55424 72.528 72.356 72.911 -6.1757 40 26 2 0 0 0 0.070838 2 51484 51484;51632 39.957 16.809 1 22287000 39626 3136 26472 26981 46451;46452 46451 -0.010727080400329214 MAQGGGPATAF 11 Oxidation (M) _M(Oxidation (M))AQGGGPATAF_ M(1)AQGGGPATAF M(46)AQGGGPATAF 0 0 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2310180664062 2 512.231842 1022.44913 0.77408 0.00039651 -1.3263 -0.00067936 -0.55219 -0.00028285 512.2311201682484 36.605 0.34454 36.605 36.409 36.754 0 27 16 2 0 0 0 0.073964 1 19414 19414 45.7 24.828 1 3692000 39627 4412 26473 26982 46453 46453 804 -0.06119639739313243 MARRDDLSF 9 Unmodified _MARRDDLSF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.77294921875 2 555.771665 1109.52878 1.4324 0.00079611 -0.032104 -1.7842E-05 1.4003 0.00077827 555.7720133071314 35.934 0.3458 31.741 31.584 31.93 -4.1928 35 21 2 0 0 0 0.094149 1 20924 20924 34.402 3.7652 1 5871700 39628 16480 26474 26983 46454 46454 -0.02160573065339122 MARRDDLSF 9 Unmodified _MARRDDLSF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8510131835938 3 370.850202 1109.52878 1.9079 0.00070754 -0.52985 -0.0001965 1.378 0.00051105 370.8500744149166 35.95 0.44069 31.757 31.555 31.996 -4.1928 65 27 3 0 0 0 0.21643 1 20933 20933 15.739 0 1 18473000 39629 16480 26474 26983 46455 46455 -0.02160573065339122 MARYEREQY 9 Unmodified _MARYEREQY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8600158691406 3 415.860878 1244.56081 -0.58993 -0.00024533 -0.31492 -0.00013096 -0.90485 -0.00037629 415.86067734297615 18.53 0.1068 18.53 18.492 18.599 0 15 9 2 0 0 0 0.54213 1 9218 9218 4.897 1.31 1 643380 39630 8379;16567 26475 26984 46456 46456 -0.05169205382162545 MARYEREQY 9 Unmodified _MARYEREQY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;ENSG00000173914|ENST00000310046|RBM4B;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.8612670898438 3 415.860878 1244.56081 1.3417 0.00055794 0.25617 0.00010653 1.5978 0.00066447 415.8609728622605 19.777 0.3201 17.12 16.955 17.275 -2.6564 47 20 3 0 0 0 0.11005 1 10474 10474 32.037 25 1 8053800 39631 8379;16567 26475 26984 46457 46457 -0.05169205382162545 MASAEQLLL 9 Oxidation (M) _M(Oxidation (M))ASAEQLLL_ M(1)ASAEQLLL M(46)ASAEQLLL 0 0 1 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.260986328125 2 496.260068 990.505582 0.14656 7.273E-05 3.0684 0.0015227 3.2149 0.0015954 496.2603889384341 65.473 0.35188 65.473 65.296 65.648 0 23 13 2 0 0 0 0.047196 1 36523 36523 46.021 24.274 1 1470300 39632 2724 26476 26985 46458 46458 473 0.009949880973636027 MASDVWHTAL 10 Unmodified _MASDVWHTAL_ 0 0 0 REV__nc|ENSG00000044115|P35221-2|CTNNA1 REV__nc|ENSG00000044115|P35221-2|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.76904296875 2 565.768591 1129.52263 0.067801 3.836E-05 -2.2607 -0.0012791 -2.1929 -0.0012407 565.7671315097728 36.995 0.31448 37.016 36.816 37.13 0.021545 21 14 2 0 0 0 0.44373 1 19618 19618 19.257 6.2145 1 2201800 + 39633 29491 26477 26986 46459 46459 -0.036950912968677585 MASDVWHTAL 10 Unmodified _MASDVWHTAL_ 0 0 0 REV__nc|ENSG00000044115|P35221-2|CTNNA1 REV__nc|ENSG00000044115|P35221-2|CTNNA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 565.768591 1129.52263 0.067801 3.836E-05 -2.2607 -0.0012791 -2.1929 -0.0012407 565.7671315097728 36.995 0.31448 37.016 36.816 37.13 0.021545 0 0 NaN 19.257 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2201800 + 39634 29491 26477 26986 -0.036950912968677585 MASSLQVFAF 10 Unmodified _MASSLQVFAF_ 0 0 0 REV__ENSG00000003756|ENST00000347869|RBM5 REV__ENSG00000003756|ENST00000347869|RBM5 MSMS AL20221201_MKP_PDAC_01 4 367.5190734863281 3 367.519682 1099.53722 NaN NaN NaN NaN NaN NaN NaN 41.541 1 36.933 36.433 37.433 -4.6079 0 0 0 0.90096 1 24964 24964 4.1895 0 1 + 39635 16939 26478 26987 46460 46460 -0.008570191487024204 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7678833007812 2 565.76658 1129.51861 0.19447 0.00011002 0.76975 0.0004355 0.96421 0.00054552 565.7669819777565 44.805 0.9883 44.783 44.261 45.249 -0.022068 101 52 3 0 0 0 0.24216 1 23930 23930 29.841 1.3461 1 28680000 39636 14647 26479 26988 46461 46461 -0.040971807905634705 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7673950195312 2 565.76658 1129.51861 0.91344 0.0005168 0.24855 0.00014062 1.162 0.00065742 565.7665048542416 58.343 1.5868 58.282 57.599 59.186 -0.060722 225 79 3 0 0 0 0.24216 1 31731 31731 29.841 2.2118 1 19319000 39637 14647 26479 26988 46462 46462 -0.040971807905634705 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7711181640625 2 565.76658 1129.51861 1.225 0.00069308 -0.52492 -0.00029698 0.70011 0.0003961 565.7674718826428 42.733 0.36814 38.049 37.858 38.226 -4.6846 48 23 3 0 0 0 0.26767 1 25795 25795 28.495 5.7582 1 19108000 39638 14647 26479 26988 46463 46463 -0.040971807905634705 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.767578125 2 565.76658 1129.51861 1.2395 0.00070124 -0.093763 -5.3048E-05 1.1457 0.00064819 565.7666639052073 50.518 1.1803 44.979 44.424 45.604 -5.5391 233 74 4 0 0 0 0.35681 1 31495 31495 23.79 2.2528 1 223280000 39639 14647 26479 26988 46464 46464 -0.040971807905634705 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.766845703125 2 565.76658 1129.51861 1.5361 0.0008691 -0.083712 -4.7361E-05 1.4524 0.00082174 565.7665488173519 64.413 1.4108 58.237 57.487 58.897 -6.1757 121 77 2 0 0 0 0.073778 1 41524 41524 45.74 18.111 1 92903000 39640 14647 26479 26988 46465 46465 -0.040971807905634705 MASSSIQGNHV 11 Unmodified _MASSSIQGNHV_ 0 0 0 ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF ENST00000514092.5_1_5:88201057-88261666:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 565.7677001953125 2 565.76658 1129.51861 NaN NaN NaN NaN NaN NaN NaN 67.414 1 61.238 60.738 61.738 -6.1757 0 0 0 0.52067 1 43913 43913 23.79 2.2528 1 39641 14647 26479 26988 46466 46466 -0.040971807905634705 MATFVHVY 8 Unmodified _MATFVHVY_ 0 0 0 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2368469238281 2 484.238938 966.463324 NaN NaN NaN NaN NaN NaN NaN 18.225 1 18.239 17.739 18.739 0.013865 0 0 0 0.97444 1 9122 9122 2.8892 0.58649 1 39642 7031 26480 26989 46467 46467 -0.021249425203563987 MAVDDFNLKY 10 Oxidation (M) _M(Oxidation (M))AVDDFNLKY_ M(1)AVDDFNLKY M(65)AVDDFNLKY 0 0 1 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2867431640625 2 616.286814 1230.55907 0.097626 6.0166E-05 0.22119 0.00013631 0.31881 0.00019648 616.2872208483594 51.906 0.66021 51.906 51.583 52.243 0 69 29 3 0 0 0 0.035244 2 28750 28641;28750 65.474 46.112 1 93068000 + 39643 210 26481 26990 46468;46469 46469 17 -0.046982591907863025 MAVDDFNLKY 10 Oxidation (M) _M(Oxidation (M))AVDDFNLKY_ M(1)AVDDFNLKY M(78)AVDDFNLKY 0 0 1 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2865600585938 2 616.286814 1230.55907 0.63635 0.00039217 0.22393 0.00013801 0.86028 0.00053018 616.2871124702837 52.542 0.53037 52.108 51.749 52.279 -0.43367 69 26 3 0 0 0 0.017375 1 28426 28426 78.06 58.699 1 37592000 + 39644 210 26481 26990 46470 46470 17 -0.046982591907863025 MAVDDFNLKY 10 Oxidation (M) _M(Oxidation (M))AVDDFNLKY_ M(1)AVDDFNLKY M(48)AVDDFNLKY 0 0 1 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2870483398438 2 616.286814 1230.55907 0.77976 0.00048056 -1.4687 -0.00090512 -0.68891 -0.00042456 616.2857520538257 52.198 0.30651 52.139 51.961 52.267 -0.058918 29 14 3 0 0 0 0.095786 1 28248 28248 47.594 34.552 1 2456400 + 39645 210 26481 26990 46471 46471 17 -0.046982591907863025 MAVDDFNLKY 10 Oxidation (M) _M(Oxidation (M))AVDDFNLKY_ M(1)AVDDFNLKY M(51)AVDDFNLKY 0 0 1 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2874755859375 2 616.286814 1230.55907 1.2364 0.000762 0.91044 0.00056109 2.1469 0.0013231 616.2876169414667 58.498 0.6115 52.423 52.145 52.756 -6.0745 124 33 6 0 0 0 0.078742 2 37431 37431;37554 51.415 37.01 1 205760000 + 39646 210 26481 26990 46472;46473 46472 17 -0.046982591907863025 MAVDDFNLKY 10 Unmodified _MAVDDFNLKY_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2907104492188 2 608.289356 1214.56416 0.40347 0.00024543 0.9005 0.00054777 1.304 0.00079319 608.2897044807075 60.211 0.2768 60.211 60.068 60.345 0 19 11 2 0 0 0 0.14688 1 33575 33575 40.239 20.982 1 2761100 + 39647 210 26481 26991 46474 46474 -0.034539553281774715 MAVDDFNLKY 10 Unmodified _MAVDDFNLKY_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.28759765625 2 608.289356 1214.56416 -0.18766 -0.00011415 -1.4302 -0.00086998 -1.6179 -0.00098413 608.2884595699992 60.846 0.26488 60.357 60.21 60.475 -0.48932 32 12 4 0 0 0 0.087043 1 33120 33120 49.554 33.707 1 22495000 + 39648 210 26481 26991 46475 46475 -0.034539553281774715 MAVDDFNLKY 10 Unmodified _MAVDDFNLKY_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.28857421875 2 608.289356 1214.56416 0.46262 0.00028141 -0.73607 -0.00044774 -0.27345 -0.00016634 608.2889200631536 66.893 0.944 60.717 60.441 61.385 -6.1757 171 53 4 0 0 0 0.035244 4 43938 43547;43680;43805;43938 65.474 46.217 1 129140000 + 39649 210 26481 26991 46476;46477;46478;46479 46479 -0.034539553281774715 MAVELPDSF 9 Oxidation (M) _M(Oxidation (M))AVELPDSF_ M(1)AVELPDSF M(60)AVELPDSF 0 0 1 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7363891601562 2 512.736425 1023.4583 0.1723 8.8346E-05 -0.74843 -0.00038375 -0.57613 -0.0002954 512.7364353106083 64.932 0.67468 64.932 64.672 65.347 0 106 29 5 0 0 0 0.023164 2 36265 36157;36265 60.39 24.345 1 9469600 39650 8280 26482 26992 46480;46481 46481 1399 -0.05249291173640813 MAVELPDSF 9 Oxidation (M) _M(Oxidation (M))AVELPDSF_ 0 0 1 ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000531390.1_1_11:67050274-67051456:+|nuORF;ENST00000533077.5_1_11:67049840-67050700:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF ENSG00000173020|ENST00000308595|GRK2 ENSG00000173020|ENST00000308595|GRK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.736425 1023.4583 0.085919 4.4054E-05 -1.9035 -0.00097601 -1.8176 -0.00093195 512.73555552773 65.392 0.083984 64.908 64.854 64.938 -0.48428 -0.011877 -0.001052 NaN 60.39 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 916470 39651 8280 26482 26992 1399 -0.05249291173640813 MAVENKEISF 10 Oxidation (M) _M(Oxidation (M))AVENKEISF_ M(1)AVENKEISF M(76)AVENKEISF 0 0 1 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.28564453125 2 592.286814 1182.55907 0.0060719 3.5963E-06 -1.2645 -0.00074894 -1.2584 -0.00074534 592.2859359441644 40.034 0.44371 40.034 39.792 40.236 0 53 21 3 0 0 0 0.020109 2 21551 21436;21551 75.571 36.956 1 7098700 39652 5983 26483 26993 46482;46483 46483 1068 -0.024902591907903115 MAVGQVSSF 9 Oxidation (M) _M(Oxidation (M))AVGQVSSF_ M(1)AVGQVSSF M(42)AVGQVSSF 0 0 1 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2237548828125 2 471.223485 940.432418 -0.24007 -0.00011312 -0.21118 -9.9513E-05 -0.45125 -0.00021264 471.22354183156625 41.008 0.33755 41.008 40.903 41.241 0 38 20 3 0 0 0 0.06187 1 22089 22089 42.095 16.695 1 8570600 39653 1413 26484 26994 46484 46484 234 -0.04018140625248634 MAVHRIGRTL 10 Unmodified _MAVHRIGRTL_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1 ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.3378295898438 2 577.334767 1152.65498 NaN NaN NaN NaN NaN NaN NaN 104.48 1 98.301 97.801 98.801 -6.1757 0 0 0 0.97592 1 69965 69965 3.2813 0 1 39654 2533 26485 26995 46485 46485 0.08475978230626424 MAVIDGNVM 9 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ M(1)AVIDGNVM(1) M(48)AVIDGNVM(48) 0 0 2 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.222900390625 2 491.222628 980.430703 -0.10862 -5.3355E-05 -0.67121 -0.00032971 -0.77983 -0.00038307 491.2227378599373 31.025 0.36282 31.025 30.831 31.194 0 54 17 4 0 0 0 0.042911 2 16178 16081;16178 48.346 25.197 1 8871000 39655 4399 26486 26996 46486;46487 46487 799;800 -0.06029517705519538 MAVIDGNVM 9 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ M(1)AVIDGNVM(1) M(44)AVIDGNVM(44) 0 0 2 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2228088378906 2 491.222628 980.430703 0.21431 0.00010527 -0.10602 -5.208E-05 0.10829 5.3193E-05 491.22300320306755 31.292 0.40924 31.292 31.132 31.541 0 51 19 4 0 0 0 0.052168 1 16283 16283 44.407 23.953 1 7636300 39656 4399 26486 26996 46488 46488 799;800 -0.06029517705519538 MAVIDGNVM 9 2 Oxidation (M) _M(Oxidation (M))AVIDGNVM(Oxidation (M))_ M(1)AVIDGNVM(1) M(57)AVIDGNVM(57) 0 0 2 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2232971191406 2 491.222628 980.430703 1.0231 0.00050257 -0.30224 -0.00014847 0.72085 0.0003541 491.22274556141997 36.918 0.30658 32.634 32.49 32.796 -4.2835 38 18 3 0 0 0 0.026094 1 21599 21599 57.471 26.835 1 9780500 39657 4399 26486 26996 46489 46489 799;800 -0.06029517705519538 MAVIDGNVM 9 Unmodified _MAVIDGNVM_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2283935546875 2 475.227713 948.440874 0.18813 8.9405E-05 0.38338 0.00018219 0.57151 0.0002716 475.2283297454039 65.598 0.42877 59.423 59.184 59.613 -6.1757 40 24 3 0 0 0 0.042911 1 42499 42499 48.346 26.599 1 21575000 39658 4399 26486 26997 46490 46490 -0.03540909980279139 MAVIDGNVM 9 Unmodified _MAVIDGNVM_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 949.4473266601562 1 949.44815 948.440874 -0.22171 -0.0002105 -0.27531 -0.00026139 -0.49701 -0.00047189 949.448472588355 65.64 0.28953 59.464 59.236 59.525 -6.1757 29 16 3 0 0 0 0.0082281 2 42527 42527;42580 92.822 48.415 1 18788000 39659 4399 26486 26997 46491;46492 46491 -0.03540909980279139 MAVLWRYFLV 10 Unmodified _MAVLWRYFLV_ 0 0 0 REV__nc|ENSG00000102384|Q92674-2|CENPI REV__nc|ENSG00000102384|Q92674-2|CENPI MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.2419738769531 3 433.242372 1296.70529 NaN NaN NaN NaN NaN NaN NaN 103.26 1 103.21 102.71 103.71 -0.047928 0 0 0 0.98914 1 57344 57344 0.77653 0.36827 1 + 39660 18237 26487 26998 46493 46493 0.06880087835747872 MAWLKLEI 8 Unmodified _MAWLKLEI_ 0 0 0 nc|ENSG00000164244|Q96M27-3|PRRC1 nc|ENSG00000164244|Q96M27-3|PRRC1 nc|ENSG00000164244|Q96M27-3|PRRC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.3016052246094 2 502.285889 1002.55722 0.11696 5.8749E-05 -1.0198 -0.00051224 -0.90285 -0.00045349 502.7870705835452 86.45 0.65179 85.947 85.791 86.443 -0.50318 48 26 3 0 0 0 8.7369 1 47505 47505 0.79363 0 1 831620 39661 16337 26488 26999 46494 46494 0.05604776581890292 MAWLVDHVY 9 Oxidation (M) _M(Oxidation (M))AWLVDHVY_ M(1)AWLVDHVY M(89)AWLVDHVY 0 0 1 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2733154296875 2 575.273509 1148.53247 0.22597 0.00013 -0.025638 -1.4749E-05 0.20034 0.00011525 575.2731546055629 60.151 0.71709 59.66 59.45 60.167 -0.49079 79 35 3 0 0 0 0.0086179 4 32782 32658;32679;32782;32885 89.427 76.895 1 33302000 39662 2336 26489 27000 46495;46496;46497;46498 46497 403 -0.035859032914686395 MAWLVDHVY 9 Oxidation (M) _M(Oxidation (M))AWLVDHVY_ M(1)AWLVDHVY M(110)AWLVDHVY 0 0 1 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2747192382812 2 575.273509 1148.53247 0.4221 0.00024282 0.23368 0.00013443 0.65579 0.00037726 575.2736503676857 59.804 0.42318 59.751 59.554 59.977 -0.053062 45 20 3 0 0 0 0.0077963 3 32555 32544;32555;32661 109.63 89.176 1 10535000 39663 2336 26489 27000 46499;46500;46501 46500 403 -0.035859032914686395 MAWLVDHVY 9 Oxidation (M) _M(Oxidation (M))AWLVDHVY_ M(1)AWLVDHVY M(60)AWLVDHVY 0 0 1 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 575.2744140625 2 575.273509 1148.53247 NaN NaN NaN NaN NaN NaN NaN 66.685 1 60.51 60.01 61.01 -6.1757 0 0 0 0.043758 1 43385 43385 60.39 33.506 1 39664 2336 26489 27000 46502 46502 403 -0.035859032914686395 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2783813476562 2 567.276052 1132.53755 0.12349 7.0053E-05 2.3269 0.00132 2.4504 0.00139 567.2776124264249 69.474 0.3491 68.995 68.81 69.159 -0.47903 32 14 3 0 0 0 0.047788 1 37956 37956 60.39 49.566 1 2569700 39665 2336 26489 27001 46503 46503 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.2777709960938 2 567.276052 1132.53755 0.79255 0.00044959 0.57235 0.00032468 1.3649 0.00077427 567.2765191248233 68.949 0.3532 68.974 68.77 69.123 0.025146 35 16 3 0 0 0 0.032796 1 37867 37867 70.716 52.581 1 5400500 39666 2336 26489 27001 46504 46504 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 567.2760620117188 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 81.1 1 74.924 74.424 75.424 -6.1757 0 0 0 0.059498 1 53220 53220 70.716 51.459 1 39667 2336 26489 27001 46505 46505 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 567.2764282226562 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 81.287 1 75.112 74.612 75.612 -6.1757 0 0 0 0.068038 1 53349 53349 67.344 52.506 1 39668 2336 26489 27001 46506 46506 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 567.2767333984375 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 81.483 1 75.307 74.807 75.807 -6.1757 0 0 0 0.19623 1 53485 53485 42.095 22.838 1 39669 2336 26489 27001 46507 46507 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 567.2769775390625 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 81.671 1 75.496 74.996 75.996 -6.1757 0 0 0 0.19623 1 53621 53621 42.095 28.189 1 39670 2336 26489 27001 46508 46508 -0.02341599428837071 MAWLVDHVY 9 Unmodified _MAWLVDHVY_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MSMS AL20221201_MKP_PDAC_01 4 567.2769775390625 2 567.276052 1132.53755 NaN NaN NaN NaN NaN NaN NaN 81.852 1 75.676 75.176 76.176 -6.1757 0 0 0 0.15231 1 53745 53745 48.346 34.44 1 39671 2336 26489 27001 46509 46509 -0.02341599428837071 MAWMLLLI 8 Unmodified _MAWMLLLI_ 0 0 0 nc|ENSG00000204475|O14931-6|NCR3;nc|ENSG00000204475|O14931-5|NCR3;nc|ENSG00000204475|O14931-4|NCR3;nc|ENSG00000204475|O14931-3|NCR3;nc|ENSG00000204475|O14931-2|NCR3;ENSG00000204475|ENST00000340027|NCR3 nc|ENSG00000204475|O14931-6|NCR3 nc|ENSG00000204475|O14931-6|NCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7814025878906 2 495.779385 989.544217 0.49236 0.0002441 0.30196 0.0001497 0.79431 0.0003938 495.7807432037215 92.232 0.49909 91.752 91.491 91.991 -0.48092 48 23 3 0 0 0 0.80624 1 50349 50349 2.8892 0.31174 1 474510 39672 10289 26490 27002 46510 46510 0.04902622198198969 MAWMWYSF 8 Unmodified _MAWMWYSF_ 0 0 0 ENST00000559717.5_1_15:91462886-91462925:+|nuORF ENST00000559717.5_1_15:91462886-91462925:+|nuORF ENST00000559717.5_1_15:91462886-91462925:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.4911804199219 3 374.490958 1120.45104 0.45657 0.00017098 -0.21359 -7.9988E-05 0.24298 9.0993E-05 374.491000405639 88.62 0.2722 88.116 87.978 88.25 -0.50423 18 11 2 0 0 0 0.80975 1 48474 48474 1.8442 1.0677 1 408280 39673 15301 26491 27003 46511 46511 -0.10436302255061491 MAYADYHDL 9 Unmodified _MAYADYHDL_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1 ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.2811889648438 2 549.731674 1097.4488 1.0995 0.00060445 2.2358 0.0012291 3.3353 0.0018335 549.7314181948575 50.244 0.22684 44.705 44.581 44.808 -5.5391 30 14 3 0 0 0 0.12183 1 31498 31498 34.102 26.813 1 12988000 39674 903 26492 27004 46512 46512 -0.09603059459186625 MAYEGQYDAY 10 Oxidation (M) _M(Oxidation (M))AYEGQYDAY_ M(1)AYEGQYDAY M(44)AYEGQYDAY 0 0 1 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000594893.5_1_19:15511079-15529746:-|nuORF;ENST00000593845.5_1_19:15510111-15529746:-|nuORF nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7366943359375 2 613.737154 1225.45975 -0.051585 -3.166E-05 -0.82426 -0.00050588 -0.87585 -0.00053754 613.7367575208249 35.426 0.26894 35.426 35.285 35.554 0 21 13 2 0 0 0 0.11755 1 18763 18763 43.858 37.135 1 4221400 39675 16019 26493 27005 46513 46513 1786 -0.14395701875514533 MAYETLEQY 9 Oxidation (M) _M(Oxidation (M))AYETLEQY_ M(1)AYETLEQY M(82)AYETLEQY 0 0 1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2503051757812 2 582.249897 1162.48524 -0.13868 -8.0744E-05 0.23094 0.00013447 0.092265 5.3722E-05 582.250135045512 44.453 0.3042 44.453 44.305 44.61 0 44 15 4 0 0 0 0.0094915 2 24135 24135;24239 81.864 54.98 1 69161000 39676 2210 26494 27006 46514;46515 46514 379 -0.08950227353125229 MAYETLEQY 9 Oxidation (M) _M(Oxidation (M))AYETLEQY_ M(1)AYETLEQY M(82)AYETLEQY 0 0 1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2500610351562 2 582.249897 1162.48524 0.70569 0.00041089 0.38777 0.00022578 1.0935 0.00063666 582.2500019318866 51.501 0.29839 45.852 45.707 46.006 -5.649 25 18 2 0 0 0 0.0094915 1 32379 32379 81.864 54.98 1 33867000 39677 2210 26494 27006 46516 46516 379 -0.08950227353125229 MAYETLEQY 9 Unmodified _MAYETLEQY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2529907226562 2 574.25244 1146.49033 0.13434 7.7142E-05 -0.62671 -0.00035989 -0.49238 -0.00028275 574.2519805585877 51.882 0.28547 51.882 51.73 52.016 0 26 12 3 0 0 0 0.07087 1 28663 28663 53.576 26.692 1 6648100 39678 2210 26494 27007 46517 46517 -0.0770592349049366 MAYETLEQY 9 Unmodified _MAYETLEQY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2522583007812 2 574.25244 1146.49033 1.0012 0.00057494 -1.279 -0.00073449 -0.27784 -0.00015955 574.2516488646777 59.844 0.40549 53.73 53.496 53.902 -6.1147 46 23 3 0 0 0 0.023481 2 38541 38405;38541 67.344 44.195 1 64460000 39679 2210 26494 27007 46518;46519 46519 -0.0770592349049366 MAYGHIDSY 9 Oxidation (M) _M(Oxidation (M))AYGHIDSY_ M(1)AYGHIDSY M(97)AYGHIDSY 0 0 1 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2252197265625 2 536.723849 1071.43315 -0.2446 -0.00013128 -1.2571 -0.00067472 -1.5017 -0.00080601 536.7233208539049 29.593 0.39322 29.593 29.349 29.742 0 74 23 5 0 0 0 0.0083087 2 15292 15292;15391 97.075 54.98 1 82063000 39680 8955 26495 27008 46520;46521 46520 1506 -0.09971345976214252 MAYGHIDSY 9 Oxidation (M) _M(Oxidation (M))AYGHIDSY_ M(1)AYGHIDSY M(100)AYGHIDSY 0 0 1 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.72412109375 2 536.723849 1071.43315 0.92827 0.00049822 -0.51677 -0.00027736 0.41149 0.00022086 536.7235277905752 33.472 0.52259 29.487 29.242 29.765 -3.9853 69 29 3 0 0 0 0.0088975 2 19216 19102;19216 104.8 70.697 1 81581000 39681 8955 26495 27008 46522;46523 46523 1506 -0.09971345976214252 MAYGHIDSY 9 Unmodified _MAYGHIDSY_ 0 0 0 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7266235351562 2 528.726392 1055.43823 0.8125 0.00042959 -0.61731 -0.00032639 0.19519 0.0001032 528.7264292695077 41.144 0.52684 36.536 36.211 36.738 -4.6079 90 32 4 0 0 0 0.0083087 2 24567 24567;24693 97.075 58.923 1 158870000 39682 8955 26495 27009 46524;46525 46524 -0.08727042113605421 MAYRLLEVT 9 Unmodified _MAYRLLEVT_ 0 0 0 REV__nc|ENSG00000155966|P51816-2|AFF2 REV__nc|ENSG00000155966|P51816-2|AFF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8674621582031 3 365.867082 1094.57942 0.80686 0.0002952 -1.2366 -0.00045242 -0.42971 -0.00015722 365.86651082142413 13.329 0.059452 10.847 10.806 10.865 -2.482 32 22 2 0 0 0 0.58865 1 6759 6759 1.0715 0 1 756190 + 39683 21301 26496 27010 46526 46526 0.03590956259677114 MAYRLLEVT 9 Unmodified _MAYRLLEVT_ 0 0 0 REV__nc|ENSG00000155966|P51816-2|AFF2 REV__nc|ENSG00000155966|P51816-2|AFF2 MSMS AL20221201_MKP_PDAC_01 4 365.8670043945312 3 365.867082 1094.57942 NaN NaN NaN NaN NaN NaN NaN 14.214 1 11.711 11.211 12.211 -2.5029 0 0 0 0.82396 1 7206 7206 2.7352 0 1 + 39684 21301 26496 27010 46527 46527 0.03590956259677114 MCCCCLMS 8 Unmodified _MCCCCLMS_ 0 0 0 REV__ENST00000570019.1_1_15:34666200-34666557:-|nuORF REV__ENST00000570019.1_1_15:34666200-34666557:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.13134765625 2 447.129459 892.244364 1.6897 0.00075551 0.099367 4.443E-05 1.7891 0.00079994 447.1306440115561 103.09 0.056168 96.912 96.887 96.943 -6.1757 28 13 3 0 0 0 0.81107 1 69145 69145 0 0 1 8486500 + 39685 28962 26497 27011 46528 46528 -0.20606820733200948 MCERFEKLQL 10 Unmodified _MCERFEKLQL_ 0 0 0 ENST00000601780.5_1_19:50986391-50986478:+|nuORF ENST00000601780.5_1_19:50986391-50986478:+|nuORF ENST00000601780.5_1_19:50986391-50986478:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8851013183594 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 108.09 1 101.91 101.41 102.41 -6.1757 0 0 0 0.9997 1 72255 72255 0.69767 0.07084 1 39686 15812 26498 27012 46529 46529 0.0006205547376794129 MCEYCKIEK 9 Unmodified _MCEYCKIEK_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7530517578125 2 573.753238 1145.49192 0.57671 0.00033089 0.15365 8.8154E-05 0.73035 0.00041904 573.7534639628237 38.337 0.46128 38.337 38.22 38.682 0 135 33 6 0 0 0 0.23158 1 20424 20424 20.454 8.8133 1 66679000 39687 5782 26499 27013 46530 46530 -0.07500328997753059 MCEYCKIEK 9 Unmodified _MCEYCKIEK_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1719970703125 3 382.837917 1145.49192 0.24759 9.4785E-05 0.36122 0.00013829 0.60881 0.00023307 382.8382491302821 38.338 0.48315 38.338 38.22 38.703 0 150 34 6 0 0 0 0.45045 1 20426 20426 14.405 4.8614 1 62666000 39688 5782 26499 27013 46531 46531 -0.07500328997753059 MCEYCKIEK 9 Unmodified _MCEYCKIEK_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7533569335938 2 573.753238 1145.49192 0.16062 9.2158E-05 0.6484 0.00037202 0.80902 0.00046418 573.7538068761262 38.65 0.34566 38.363 38.174 38.52 -0.28687 36 16 3 0 0 0 0.34999 1 20317 20317 14.838 4.0143 1 11984000 39689 5782 26499 27013 46532 46532 -0.07500328997753059 MCEYCKIEK 9 Unmodified _MCEYCKIEK_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 573.753238 1145.49192 0.11116 6.3781E-05 2.2424 0.0012866 2.3536 0.0013504 573.7547643251667 38.292 0.18272 38.309 38.191 38.374 0.01704 -0.027723 0.002087 NaN 20.454 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2306700 39690 5782 26499 27013 -0.07500328997753059 MCFHNWVL 8 Unmodified _MCFHNWVL_ 0 0 0 REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43 REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.4951171875 3 350.494702 1048.46228 NaN NaN NaN NaN NaN NaN NaN 93.171 1 92.714 92.214 93.214 -0.4574 0 0 0 0.97444 1 50921 50921 0.45834 0 1 + 39691 23956 26500 27014 46533 46533 -0.060014801609213464 MCFQIDELLGF 11 Unmodified _MCFQIDELLGF_ 0 0 0 REV__ENST00000561721.6_1_17:75089357-75138808:+|nuORF REV__ENST00000561721.6_1_17:75089357-75138808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2057800292969 3 439.206887 1314.59883 0.18177 7.9833E-05 -0.1238 -5.4376E-05 0.057962 2.5457E-05 439.2068991665579 30.245 0.32217 30.275 30.091 30.413 0.030106 46 13 4 0 0 0 0.71503 1 15770 15770 2.8433 1.101 1 6272400 + 39692 28847 26501 27015 46534 46534 -0.04588455511725442 MCHIRDGSVMP 11 Unmodified _MCHIRDGSVMP_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.2808227539062 2 623.280486 1244.54642 NaN NaN NaN NaN NaN NaN NaN 61.051 1 61.051 60.551 61.551 0 0 0 0 0.93933 1 34046 34046 2.9952 0 1 + 39693 23384 26502 27016 46535 46535 -0.06607317126326961 MCIDDLNDTC 10 Unmodified _MCIDDLNDTC_ 0 0 0 REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.4766235351562 3 381.476937 1141.40898 -0.72819 -0.00027779 -0.5476 -0.0002089 -1.2758 -0.00048668 381.47667079809685 30.122 0.26906 30.122 29.974 30.243 0 22 12 2 0 0 0 0.71413 1 15622 15622 0.56317 0.15491 1 3911400 + 39694 22505 26503 27017 46536 46536 -0.15606690516392518 MCIPLFVL 8 Unmodified _MCIPLFVL_ 0 0 0 ENST00000531381.1_1_11:121962126-121962159:-|nuORF ENST00000531381.1_1_11:121962126-121962159:-|nuORF ENST00000531381.1_1_11:121962126-121962159:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.8828125 1 935.509294 934.502017 0.25489 0.00023846 -1.3086 -0.0012242 -1.0537 -0.00098577 935.507886707801 96.484 0.23237 96.484 96.355 96.587 0 25 18 2 0 0 0 0.80975 1 53286 53286 0.79363 0 1 395300 39695 14905 26504 27018 46537 46537 0.03214646789797371 MCKKMKHLWFF 11 Unmodified _MCKKMKHLWFF_ 0 0 0 nc|ENSG00000211959|P01824|IGHV4-39 nc|ENSG00000211959|P01824|IGHV4-39 nc|ENSG00000211959|P01824|IGHV4-39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 749.87939453125 2 749.879638 1497.74472 NaN NaN NaN NaN NaN NaN NaN 76.982 1 76.982 76.482 77.482 0 0 0 0 0.94301 1 42796 42796 0.35063 0.043601 1 39696 16538 26505 27019 46538 46538 0.01576148523304255 MCKTWATVD 9 Unmodified _MCKTWATVD_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MSMS AL20221201_MKP_PDAC_01 4 352.1619873046875 3 352.161389 1053.46234 NaN NaN NaN NaN NaN NaN NaN 14.272 1 11.769 11.269 12.269 -2.5029 0 0 0 0.84564 1 7237 7237 1.0715 0 1 + 39697 20671 26506 27020 46539 46539 -0.06225524951582884 MCKTWATVD 9 Unmodified _MCKTWATVD_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MSMS AL20221201_MKP_PDAC_01 4 352.1611938476562 3 352.161389 1053.46234 NaN NaN NaN NaN NaN NaN NaN 15.067 1 12.54 12.04 13.04 -2.5273 0 0 0 0.84564 1 7701 7701 1.0715 0 1 + 39698 20671 26506 27020 46540 46540 -0.06225524951582884 MCLCMWPCF 9 Unmodified _MCLCMWPCF_ 0 0 0 ENST00000471186.5_1_2:118867212-118867425:+|nuORF ENST00000471186.5_1_2:118867212-118867425:+|nuORF ENST00000471186.5_1_2:118867212-118867425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2090454101562 2 567.209097 1132.40364 0.29027 0.00016464 -0.36541 -0.00020727 -0.075148 -4.2624E-05 567.2088814317212 60.109 0.35658 59.618 59.429 59.786 -0.49079 26 17 2 0 0 0 0.58466 1 32798 32798 2.3027 0 1 3214000 39699 13866 26507 27021 46541 46541 -0.15726364113584168 MCNCCGCPD 9 Unmodified _MCNCCGCPD_ 0 0 0 REV__ENSG00000170464|ENST00000302060|DNAJC18 REV__ENSG00000170464|ENST00000302060|DNAJC18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.1452331542969 2 473.123219 944.231885 NaN NaN NaN NaN NaN NaN NaN 103.04 1 103.04 102.54 103.54 0 0 0 0 0.8622 1 56811 56811 0 0 1 + 39700 22484 26508 27022 46542 46542 -0.24246140871900934 MCRGFFFF 8 Unmodified _MCRGFFFF_ 0 0 0 REV__ENST00000301633.8_1_17:76220065-76220179:+|nuORF REV__ENST00000301633.8_1_17:76220065-76220179:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7362060546875 2 527.735509 1053.45646 NaN NaN NaN NaN NaN NaN NaN 85.84 1 85.338 84.838 85.838 -0.5015 0 0 0 0.97444 1 46979 46979 2.5775 0 1 + 39701 25321 26509 27023 46543 46543 -0.06812578672588643 MCSTYSEIYE 10 Unmodified _MCSTYSEIYE_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2409057617188 2 613.241215 1224.46788 0.44448 0.00027257 -0.24507 -0.00015029 0.19941 0.00012228 613.241301450791 56.902 0.40947 56.902 56.746 57.156 0 73 17 7 0 0 0 0.52888 1 31610 31610 14.838 6.9281 1 66673000 + 39702 23020 26510 27024 46544 46544 -0.13537890950397014 MCSTYSEIYE 10 Unmodified _MCSTYSEIYE_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 613.241215 1224.46788 0.44448 0.00027257 -0.24507 -0.00015029 0.19941 0.00012228 613.241301450791 56.902 0.40947 56.902 56.746 57.156 0 -0.093604 0.0003111 NaN 14.838 73 17 7 NaN NaN NaN NaN 0 NaN NaN 0 66673000 + 39703 23020 26510 27024 -0.13537890950397014 MCTYQLLFPH 10 Unmodified _MCTYQLLFPH_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2021484375 3 418.199955 1251.57804 -0.39108 -0.00016355 4.2023 0.0017574 3.8112 0.0015939 418.2023798213563 23.084 0.18764 23.084 22.995 23.182 0 17 9 2 0 0 0 0.70951 1 11765 11765 0.77653 0.27058 1 981360 39704 1017 26511 27025 46545 46545 -0.03769001100704372 MDDDDSYEDD 10 Unmodified _MDDDDSYEDD_ 0 0 0 REV__ENSG00000111530|ENST00000545606|CAND1 REV__ENSG00000111530|ENST00000545606|CAND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.1856689453125 2 610.182605 1218.35066 NaN NaN NaN NaN NaN NaN NaN 1.5185 1 1.4979 0.99792 1.9979 -0.020623 0 0 0 1.0024 1 786 786 0.40072 0.40072 1 + 39705 18754 26512 27026 46546 46546 -0.24978377356342207 MDEDTELTI 9 Unmodified _MDEDTELTI_ 0 0 0 REV__ENSG00000189091|ENST00000302516|SF3B3 REV__ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.1583251953125 3 356.158479 1065.45361 0.12261 4.3669E-05 -2.3576 -0.0008397 -2.235 -0.00079603 356.15823503737727 58.932 0.28536 58.932 58.809 59.095 0 32 12 3 0 0 0 0.54213 1 32854 32854 4.897 0 1 4048000 + 39706 23761 26513 27027 46547 46547 -0.07650220107075256 MDEVEQDQHE 10 Unmodified _MDEVEQDQHE_ 0 0 0 ENST00000463419.1_1_14:51273386-51297283:-|nuORF;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;nc|ENSG00000100503|Q8N4C6-4|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN ENST00000463419.1_1_14:51273386-51297283:-|nuORF ENST00000463419.1_1_14:51273386-51297283:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.4989318847656 3 420.499675 1258.4772 -0.51283 -0.00021565 -1.6414 -0.0006902 -2.1542 -0.00090584 420.4991218504647 25.723 0.26953 25.723 25.57 25.84 0 26 12 3 0 0 0 0.7191 1 13184 13184 0.77653 0.078866 1 1941300 39707 1836 26514 27028 46548 46548 -0.14170406340531372 MDGESAEDILQ 11 Unmodified _MDGESAEDILQ_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.1760559082031 3 403.176421 1206.50743 NaN NaN NaN NaN NaN NaN NaN 45.026 1 45.004 44.504 45.504 -0.022064 0 0 0 0.94201 1 24172 24172 0.36667 0 1 + 39708 17416 26515 27029 46549 46549 -0.08756047675365153 MDKEEEICY 9 Unmodified _MDKEEEICY_ 0 0 0 REV__ENSG00000134262|ENST00000369569|AP4B1 REV__ENSG00000134262|ENST00000369569|AP4B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.15966796875 3 387.159714 1158.45731 0.73285 0.00028373 0.81491 0.0003155 1.5478 0.00059923 387.1600692602464 22.702 0.34986 19.923 19.722 20.072 -2.7784 65 25 3 0 0 0 0.55144 1 12177 12177 2.4985 1.2837 1 14347000 + 39709 19972 26516 27030 46550 46550 -0.1155787360485192 MDKIIRGKLAL 11 Unmodified _MDKIIRGKLAL_ 0 0 0 ENST00000525088.5_1_11:67200641-67201630:+|nuORF;ENSG00000175634|ENST00000312629|RPS6KB2 ENST00000525088.5_1_11:67200641-67201630:+|nuORF ENST00000525088.5_1_11:67200641-67201630:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.0530395507812 2 629.389208 1256.76386 NaN NaN NaN NaN NaN NaN NaN 102.33 1 102.28 101.78 102.78 -0.045853 0 0 0 0.73356 1 56840 56840 15.248 1.6336 1 39710 8534 26517 27031 46551 46551 0.1457514441026433 MDKKYRSL 8 Unmodified _MDKKYRSL_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7817993164062 2 520.781502 1039.54845 0.017501 9.1143E-06 1.2804 0.0006668 1.2979 0.00067592 520.781669923686 72.397 0.42972 72.439 72.21 72.64 0.041733 27 19 2 0 0 0 0.76266 1 39904 39904 11.64 0 1 2065300 + 39711 188 26518 27032 46552 46552 0.030258029454444113 MDKTLPESF 9 Unmodified _MDKTLPESF_ 0 0 0 REV__ENSG00000178789|ENST00000392621|CD300LB REV__ENSG00000178789|ENST00000392621|CD300LB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2555541992188 2 534.257525 1066.5005 0.70795 0.00037823 0.8272 0.00044194 1.5352 0.00082017 534.2580098775859 60.417 0.55194 60.417 59.962 60.514 0 37 24 2 0 0 0 0.23158 1 33625 33625 20.454 0 1 2383200 + 39712 23066 26519 27033 46553 46553 -0.030093157652800073 MDLEICEVL 9 Unmodified _MDLEICEVL_ 0 0 0 nc|ENSG00000143363|Q86TP1-4|PRUNE1;nc|ENSG00000143363|Q86TP1-5|PRUNE1;nc|ENSG00000143363|Q86TP1-6|PRUNE1 nc|ENSG00000143363|Q86TP1-4|PRUNE1 nc|ENSG00000143363|Q86TP1-4|PRUNE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2305297851562 2 532.753761 1063.49297 0.35781 0.00019062 1.4795 0.00078822 1.8373 0.00097884 533.2562594639469 61.422 0.29745 61.422 61.275 61.572 0 23 13 3 0 0 0 0.20528 1 34306 34306 8.5933 3.8373 1 991980 39713 16243 26520 27034 46554 46554 -0.036237913571994795 MDLEMLDAQTA 11 Unmodified _MDLEMLDAQTA_ 0 0 0 REV__ENSG00000168036|ENST00000349496|CTNNB1 REV__ENSG00000168036|ENST00000349496|CTNNB1 MSMS AL20221201_MKP_PDAC_01 4 618.8365478515625 2 619.275589 1236.53662 NaN NaN NaN NaN NaN NaN NaN 102.56 1 96.387 95.887 96.887 -6.1757 0 0 0 0.93613 1 68820 68820 5.2969 0 1 + 39714 22281 26521 27035 46555 46555 -0.07218226650729775 MDLHIIWI 8 Unmodified _MDLHIIWI_ 0 0 0 REV__ENSG00000114735|ENST00000232854|HEMK1 REV__ENSG00000114735|ENST00000232854|HEMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.782470703125 2 520.783513 1039.55247 0.039104 2.0365E-05 -3.6635 -0.0019079 -3.6244 -0.0018875 520.7818688161916 72.716 0.28377 72.758 72.617 72.901 0.041733 22 13 2 0 0 0 0.80143 1 40071 40071 5.7604 0.52976 1 2469300 + 39715 18928 26522 27036 46556 46556 0.03427892439162861 MDLRGVGMKHF 11 Unmodified _MDLRGVGMKHF_ 0 0 0 REV__ENSG00000166963|ENST00000300231|MAP1A REV__ENSG00000166963|ENST00000300231|MAP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8884887695312 3 430.88637 1289.63728 NaN NaN NaN NaN NaN NaN NaN 48.903 1 48.903 48.403 49.403 0 0 0 0 0.94165 1 26869 26869 0.45452 0 1 + 39716 22169 26523 27037 46557 46557 0.0040489491345852 MDLRGVGMKHF 11 Unmodified _MDLRGVGMKHF_ 0 0 0 REV__ENSG00000166963|ENST00000300231|MAP1A REV__ENSG00000166963|ENST00000300231|MAP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8885803222656 3 430.88637 1289.63728 NaN NaN NaN NaN NaN NaN NaN 52.079 1 52.02 51.52 52.52 -0.058918 0 0 0 0.93933 1 28205 28205 2.6312 0.37851 1 + 39717 22169 26523 27037 46558 46558 0.0040489491345852 MDLVFLFDN 9 Unmodified _MDLVFLFDN_ 0 0 0 ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2710571289062 2 557.267893 1112.52123 1.0609 0.00059123 1.1409 0.0006358 2.2019 0.001227 557.2687098034869 93.706 1.1584 87.53 87.233 88.392 -6.1757 135 68 2 0 0 0 0.34999 1 62463 62463 14.838 1.3304 1 49295000 39718 2199 26524 27038 46559 46559 -0.03052725385600752 MDMESIFEEP 10 Unmodified _MDMESIFEEP_ 0 0 0 REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF REV__ENST00000483823.1_1_3:88997907-88998639:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.8351745605469 3 409.835119 1226.48353 NaN NaN NaN NaN NaN NaN NaN 45.382 1 40.427 39.927 40.927 -4.9549 0 0 0 0.9731 1 27843 27843 3.5871 0.26742 1 + 39719 19642 26525 27039 46560 46560 -0.12065604433360022 MDPFNHRIF 9 Unmodified _MDPFNHRIF_ 0 0 0 ENST00000395526.8_1_10:51946049-51946148:-|nuORF ENST00000395526.8_1_10:51946049-51946148:-|nuORF ENST00000395526.8_1_10:51946049-51946148:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7830810546875 2 588.784576 1175.5546 0.01275 7.5071E-06 -0.56933 -0.00033521 -0.55658 -0.00032771 588.7839578369205 43.334 0.28203 43.334 43.204 43.486 0 36 13 3 0 0 0 0.36964 1 23498 23498 13.906 0 1 12951000 39720 12773 26526 27040 46561 46561 -0.02615678823053713 MDPFNHRIF 9 Unmodified _MDPFNHRIF_ 0 0 0 ENST00000395526.8_1_10:51946049-51946148:-|nuORF ENST00000395526.8_1_10:51946049-51946148:-|nuORF ENST00000395526.8_1_10:51946049-51946148:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.7843017578125 2 588.784576 1175.5546 1.0303 0.00060662 -1.1088 -0.00065282 -0.078477 -4.6206E-05 588.7840728015766 49.646 0.40149 44.107 43.956 44.357 -5.5391 64 25 3 0 0 0 0.25681 2 30981 30981;31119 19.257 1.1106 1 72661000 39721 12773 26526 27040 46562;46563 46562 -0.02615678823053713 MDPYDGYDPS 10 Unmodified _MDPYDGYDPS_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF;ENST00000598074.1_1_19:47226248-47228085:-|nuORF ENSG00000090372|ENST00000263280|STRN4;ENST00000598074.1_1_19:47226248-47228085:-|nuORF ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1470947265625 3 387.146462 1158.41756 0.042446 1.6433E-05 1.8503 0.00071633 1.8927 0.00073276 387.14723174397665 80.378 0.46945 80.378 80.18 80.649 0 35 21 2 0 0 0 0.7191 1 44678 44678 0.77653 0.50751 1 1201000 39722 1555;15780 26527 27041 46564 46564 -0.1553167728391145 MDQRMDRWRRR 11 Unmodified _MDQRMDRWRRR_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 402.2385559082031 4 402.204493 1604.78887 1.2552 0.00050483 2.2664 0.00091155 3.5215 0.0014164 402.4560056566838 20.472 0.19617 17.779 17.666 17.862 -2.693 24 9 3 0 0 0 0.30601 1 10929 10929 0.073264 0 1 3301700 39723 9905 26528 27042 46565 46565 0.01066268993849917 MDRFHTVREEL 11 Unmodified _MDRFHTVREEL_ 0 0 0 REV__ENST00000483040.1_1_10:132891427-132954311:-|nuORF REV__ENST00000483040.1_1_10:132891427-132954311:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.8560791015625 2 716.853718 1431.69288 -0.0088025 -6.3101E-06 0.22247 0.00015948 0.21367 0.00015317 716.8541552974838 92.753 0.22099 92.753 92.649 92.87 0 28 13 3 0 0 0 0.72309 1 51273 51273 2.086 0 1 579080 + 39724 22942 26529 27043 46566 46566 -0.005696003652246873 MDRRATPHSL 10 Unmodified _MDRRATPHSL_ 0 0 0 REV__ENST00000491404.1_1_6:74228710-74228824:-|nuORF REV__ENST00000491404.1_1_6:74228710-74228824:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2065124511719 3 395.204868 1182.59277 0.67629 0.00026727 2.099 0.00082954 2.7753 0.0010968 395.2055749564907 40.353 0.35851 35.824 35.705 36.064 -4.5294 34 22 2 0 0 0 0.54684 1 24076 24076 12.175 2.931 1 8699600 + 39725 27893 26530 27044 46567 46567 0.008782070916367957 MDSDLYGIL 9 Unmodified _MDSDLYGIL_ 0 0 0 REV__ENST00000507611.1_1_4:121739497-121742479:-|nuORF REV__ENST00000507611.1_1_4:121739497-121742479:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7445068359375 2 513.74425 1025.47395 0.23019 0.00011826 0.21678 0.00011137 0.44697 0.00022963 513.7443653755012 79.666 0.37313 79.666 79.446 79.819 0 27 15 2 0 0 0 0.54444 1 44305 44305 4.756 0 1 699280 + 39726 20358 26531 27045 46568 46568 -0.037770046565810844 MDSETLQQV 9 Unmodified _MDSETLQQV_ 0 0 0 ENSG00000147606|ENST00000276609|SLC26A7;nc|ENSG00000147606|Q8TE54-2|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7422485351562 2 525.742239 1049.46993 0.45781 0.00024069 0.087247 4.5869E-05 0.54506 0.00028656 525.7422680296326 87.374 0.36139 87.374 87.17 87.531 0 25 16 2 0 0 0 0.32871 1 48361 48361 15.847 4.2069 1 754850 39727 5869 26532 27046 46569 46569 -0.05283094150308898 MDTSVFISV 9 Unmodified _MDTSVFISV_ 0 0 0 ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF ENST00000547717.1_1_12:53848575-53861193:+|nuORF ENST00000547717.1_1_12:53848575-53861193:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7440185546875 2 499.746793 997.479033 NaN NaN NaN NaN NaN NaN NaN 62.454 1 62.454 61.954 62.954 0 0 0 0 0.6032 1 34834 34834 12.532 1.4171 1 39728 15126 26533 27047 46570 46570 -0.019807007939675714 MDVLFEKWFY 10 Unmodified _MDVLFEKWFY_ 0 0 0 nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO nc|ENSG00000162882|P46952-2|HAAO nc|ENSG00000162882|P46952-2|HAAO MSMS AL20221201_MKP_PDAC_01 4 459.8902587890625 3 459.889775 1376.6475 NaN NaN NaN NaN NaN NaN NaN 46.89 1 41.809 41.309 42.309 -5.0805 0 0 0 0.8634 1 29040 29040 9.544 3.3096 1 39729 6925 26534 27048 46571 46571 -0.025762188803128083 MDVQEVQYTF 10 Unmodified _MDVQEVQYTF_ 0 0 0 ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG ENSG00000139372|ENST00000392872|TDG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.2852172851562 2 630.284271 1258.55399 0.079557 5.0143E-05 1.6779 0.0010575 1.7574 0.0011077 630.786955391985 65.117 0.29471 65.117 65.052 65.347 0 17 11 2 0 0 0 0.63399 1 36373 36373 9.3831 3.1773 1 504680 39730 5153 26535 27049 46572 46572 -0.06494563053411184 MDWLVRNVTY 10 Unmodified _MDWLVRNVTY_ 0 0 0 ENSG00000093072|ENST00000399837|ADA2 ENSG00000093072|ENST00000399837|ADA2 ENSG00000093072|ENST00000399837|ADA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8851318359375 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 23.241 1 23.253 22.753 23.753 0.012396 0 0 0 1.0047 1 11846 11846 0.15932 0 1 39731 1630 26536 27050 46573 46573 -0.002748713086020871 MDYYVGGDLL 10 Unmodified _MDYYVGGDLL_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB;ENST00000478573.6_1_1:227381485-227504745:-|nuORF;nc|ENSG00000143776|Q5VT25-3|CDC42BPA;nc|ENSG00000143776|Q5VT25-4|CDC42BPA;nc|ENSG00000143776|Q5VT25-5|CDC42BPA;nc|ENSG00000143776|Q5VT25|CDC42BPA;ENSG00000143776|ENST00000366766|CDC42BPA;nc|ENSG00000143776|Q5VT25-6|CDC42BPA ENSG00000198752|ENST00000361246|CDC42BPB;nc|ENSG00000143776|Q5VT25-3|CDC42BPA ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.264404296875 2 573.262807 1144.51106 0.63623 0.00036473 0.11734 6.727E-05 0.75358 0.000432 573.2627369260008 87.099 0.48578 86.595 86.369 86.855 -0.50423 39 19 4 0 0 0 0.71123 1 47724 47724 1.6526 0 1 1134000 39732 10141;5550 26537 27051 46574 46574 -0.05541333110841151 MEARNEENLLF 11 Unmodified _MEARNEENLLF_ 0 0 0 ENST00000370803.7_1_X:133560142-133560223:+|nuORF ENST00000370803.7_1_X:133560142-133560223:+|nuORF ENST00000370803.7_1_X:133560142-133560223:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.8270263671875 2 683.327002 1364.63945 0.051041 3.4878E-05 -1.9813 -0.0013539 -1.9303 -0.001319 683.3258800533072 69.201 0.29555 68.72 68.554 68.849 -0.48071 23 12 2 0 0 0 0.5229 1 37829 37829 15.248 3.0078 1 1321000 39733 12345 26538 27052 46575 46575 -0.028283978677563937 MEATKPSVETF 11 Unmodified _MEATKPSVETF_ 0 0 0 REV__ENSG00000205838|ENST00000505624|TTC23L REV__ENSG00000205838|ENST00000505624|TTC23L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.2999267578125 2 620.299921 1238.58529 0.70964 0.00044019 -3.356 -0.0020817 -2.6464 -0.0016416 620.2979148227237 73.175 0.28416 72.699 72.497 72.781 -0.47588 19 12 2 0 0 0 0.66428 1 40030 40030 7.609 0.88579 1 548040 + 39734 24244 26539 27053 46576 46576 -0.024459900193278372 MECCCCCCEE 10 Unmodified _MECCCCCCEE_ 0 0 0 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 ENSG00000170775|ENST00000303921|GPR37 MSMS AL20221201_MKP_PDAC_01 4 578.1253051757812 2 578.124244 1154.23394 NaN NaN NaN NaN NaN NaN NaN 3.6378 1 1.1558 0.65581 1.6558 -2.482 0 0 0 1.0061 1 1845 1845 0 0 1 39735 8020 26540 27054 46577 46577 -0.33701216240615395 MEDDAVPA 8 Oxidation (M) _M(Oxidation (M))EDDAVPA_ M(1)EDDAVPA M(47)EDDAVPA 0 0 1 ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK ENST00000568300.6_1_16:19775348-19867867:+|nuORF ENST00000568300.6_1_16:19775348-19867867:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 863.346923828125 1 863.345125 862.337848 -1.009 -0.00087112 0.28421 0.00024537 -0.7248 -0.00062576 863.345685605891 32.239 0.31173 32.239 32.043 32.355 0 34 15 3 0 0 0 0.37649 1 16778 16778 46.921 8.7697 1 7872700 39736 8443 26541 27055 46578 46578 1433 -0.09882699167258124 MEDDAVPA 8 Oxidation (M) _M(Oxidation (M))EDDAVPA_ M(1)EDDAVPA M(57)EDDAVPA 0 0 1 ENST00000568300.6_1_16:19775348-19867867:+|nuORF;ENSG00000174628|ENST00000695302|IQCK ENST00000568300.6_1_16:19775348-19867867:+|nuORF ENST00000568300.6_1_16:19775348-19867867:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.3436889648438 1 863.345125 862.337848 0.53697 0.00046359 -0.40126 -0.00034642 0.13571 0.00011716 863.3450846817244 38.26 0.37443 33.891 33.718 34.092 -4.3689 41 22 3 0 0 0 0.28922 1 22488 22488 56.541 22.354 1 11271000 39737 8443 26541 27055 46579 46579 1433 -0.09882699167258124 MEDEESPALFH 11 Unmodified _MEDEESPALFH_ 0 0 0 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.7769775390625 2 652.77681 1303.53907 0.47733 0.00031159 -0.052846 -3.4497E-05 0.42448 0.00027709 652.7763480942177 84.334 0.24314 83.834 83.689 83.932 -0.49961 19 10 3 0 0 0 0.72952 1 46133 46133 1.4819 0.15237 1 511110 + 39738 17782 26542 27056 46580 46580 -0.10056054921415125 MEDLLLFV 8 Unmodified _MEDLLLFV_ 0 0 0 ENST00000518319.5_1_8:94768050-94770751:+|nuORF ENST00000518319.5_1_8:94768050-94770751:+|nuORF ENST00000518319.5_1_8:94768050-94770751:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7610778808594 2 490.262079 978.509605 0.15502 7.6E-05 1.6406 0.00080432 1.7956 0.00088032 490.2623286522972 64.392 0.19469 64.392 64.301 64.496 0 11 8 2 0 0 0 8.7369 1 35934 35934 2.5775 0 1 313070 39739 14688 26543 27057 46581 46581 0.019490775910753655 MEEDKVNTL 9 Unmodified _MEEDKVNTL_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4 ENSG00000264424|ENST00000255381|MYH4 ENSG00000264424|ENST00000255381|MYH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.756591796875 2 539.757889 1077.50123 0.70724 0.00038174 2.1389 0.0011545 2.8461 0.0015362 540.2613873682344 42.443 0.5198 42.443 42.199 42.718 0 70 25 4 0 0 0 0.32871 1 23049 23049 15.847 1.0089 1 25516000 39740 10856 26544 27058 46582 46582 -0.034425211161988045 MEEEAGQTSI 10 Unmodified _MEEEAGQTSI_ 0 0 0 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 ENSG00000160445|ENST00000291900|ZER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7373657226562 2 547.737154 1093.45975 0.79978 0.00043807 -0.12825 -7.0247E-05 0.67153 0.00036782 547.7370603758652 39.128 0.60057 34.677 34.414 35.014 -4.4509 68 37 2 0 0 0 0.1942 1 23246 23246 34.402 5.3201 1 60889000 39741 6727 26545 27059 46583 46583 -0.08323701875519873 MEEEEEEE 8 Unmodified _MEEEEEEE_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000526955.1_1_11:125281302-125301285:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;ENSG00000110429|ENST00000265651|FBXO3;ENSG00000102362|ENST00000372989|SYTL4;nc|ENSG00000102362|Q96C24-2|SYTL4;ENSG00000165495|ENST00000298282|PKNOX2;nc|ENSG00000165495|Q96KN3-2|PKNOX2;ENSG00000122965|ENST00000261741|RBM19;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF;REV__nc|ENSG00000140367|Q8WVN8-2|UBE2Q2;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;REV__ENSG00000242732|ENST00000609883|RTL5;REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000110429|ENST00000265651|FBXO3;REV__ENSG00000169375|ENST00000394947|SIN3A;REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN;ENSG00000102362|ENST00000372989|SYTL4;ENSG00000165495|ENST00000298282|PKNOX2;REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000122965|ENST00000261741|RBM19;REV__nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000114867|Q04637-9|EIF4G1 MSMS AL20221201_MKP_PDAC_01 4 351.8262329101562 3 351.790343 1052.3492 NaN NaN NaN NaN NaN NaN NaN 11.873 1 9.3906 8.8906 9.8906 -2.482 0 0 0 0.97444 1 5974 5974 0 0 1 39742 3070;16132;29773;1180;2720;24466;7588;16996;20429;2008;3671;2038;16984;22395;17916;20463;7347;8698 26546 27060 46584 46584 -0.17487966654448428 MEEEGLKDEEK 11 Unmodified _MEEEGLKDEEK_ 0 0 0 ENSG00000112079|ENST00000229812|STK38 ENSG00000112079|ENST00000229812|STK38 ENSG00000112079|ENST00000229812|STK38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.8006591796875 2 668.800482 1335.58641 -0.35369 -0.00023654 1.0885 0.00072802 0.73486 0.00049147 668.8013953485337 25.377 0.18009 22.494 22.387 22.568 -2.8831 16 9 2 0 0 0 0.20054 1 13897 13897 32.037 6.0168 1 2834500 39743 2857 26547 27061 46585 46585 -0.06795820441061551 MEEGIDRY 8 Unmodified _MEEGIDRY_ 0 0 0 REV__ENSG00000129250|ENST00000320785|KIF1C;REV__nc|ENSG00000130294|Q12756|KIF1A REV__nc|ENSG00000130294|Q12756|KIF1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2454528808594 2 506.723849 1011.43315 -0.012173 -6.1684E-06 -1.3504 -0.00068426 -1.3625 -0.00069043 506.72373050032877 22.034 0.2396 22.034 22.005 22.245 0 17 12 2 0 0 0 8.7369 1 11222 11222 2.3027 0.24298 1 577110 + 39744 19712;19658 26548 27062 46586 46586 -0.07211345976213579 MEEIEEAYC 9 Unmodified _MEEIEEAYC_ 0 0 0 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 ENSG00000113716|ENST00000502717|HMGXB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.25 2 558.714833 1115.41511 0.40578 0.00022671 -0.81204 -0.0004537 -0.40626 -0.00022698 558.7142362535511 76.689 0.21794 76.689 76.541 76.759 0 13 8 2 0 0 0 0.21893 1 42598 42598 0.52476 0 1 407270 39745 2992 26549 27063 46587 46587 -0.13797849013235464 MEEIRNFQI 9 Oxidation (M) _M(Oxidation (M))EEIRNFQI_ M(1)EEIRNFQI M(44)EEIRNFQI 0 0 1 ENSG00000105072|ENST00000221671|C19orf44;nc|nan|Q9H6X5-2|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 ENSG00000105072|ENST00000221671|C19orf44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2930297851562 2 598.29243 1194.57031 0.11725 7.015E-05 -0.15884 -9.5036E-05 -0.041594 -2.4886E-05 598.292556622678 50.591 0.41258 50.591 50.369 50.782 0 77 19 5 0 0 0 0.05447 1 27839 27839 43.858 16.229 1 93025000 39746 2274 26550 27064 46588 46588 389 -0.01919437096648835 MEELEALWL 9 Unmodified _MEELEALWL_ 0 0 0 ENSG00000273079|ENST00000609686|GRIN2B ENSG00000273079|ENST00000609686|GRIN2B ENSG00000273079|ENST00000609686|GRIN2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7858276367188 2 567.281 1132.54745 0.81075 0.00045992 -2.2072 -0.0012521 -1.3964 -0.00079217 567.2786761211421 58.245 0.78607 52.218 51.736 52.522 -6.0275 113 43 4 0 0 0 0.28047 1 37147 37147 18.135 5.0925 1 258330000 39747 10892 26551 27065 46589 46589 -0.013524562141128627 MEEPQILRQF 10 Unmodified _MEEPQILRQF_ 0 0 0 REV__ENST00000531823.5_1_8:38125951-38126678:-|nuORF REV__ENST00000531823.5_1_8:38125951-38126678:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8888549804688 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 96.191 1 90.015 89.515 90.515 -6.1757 0 0 0 0.97302 1 63735 63735 1.7423 0 1 + 39748 20898 26552 27066 46590 46590 0.010571113458127002 MEETKEWKS 9 Unmodified _MEETKEWKS_ 0 0 0 nc|ENSG00000166928|Q96JA4-2|MS4A14;ENSG00000166928|ENST00000300187|MS4A14;nc|ENSG00000166928|Q96JA4-5|MS4A14 nc|ENSG00000166928|Q96JA4-2|MS4A14 nc|ENSG00000166928|Q96JA4-2|MS4A14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2665405273438 2 584.271164 1166.52777 NaN NaN NaN NaN NaN NaN NaN 56.386 1 55.9 55.4 56.4 -0.48554 0 0 0 0.12343 1 30615 30615 39.95 3.4435 1 39749 7551 26553 27067 46591 46591 -0.048828322248937184 MEETVYNLF 9 Unmodified _MEETVYNLF_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5101928710938 3 382.510964 1144.51106 0.040728 1.5579E-05 -1.5427 -0.00059012 -1.502 -0.00057454 382.5103074965559 51.704 0.17136 51.27 51.174 51.346 -0.43367 14 8 2 0 0 0 0.49272 1 27919 27919 4.897 2.1618 1 3379100 + 39750 19751 26554 27068 46592 46592 -0.055413331108638886 MEETVYNLF 9 Unmodified _MEETVYNLF_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5101013183594 3 382.510964 1144.51106 -0.2586 -9.8919E-05 -1.6394 -0.0006271 -1.898 -0.00072602 382.5101369488106 51.329 0.29473 51.275 51.107 51.401 -0.053871 33 14 3 0 0 0 0.39863 1 27752 27752 8.1555 2.8586 1 5103300 + 39751 19751 26554 27068 46593 46593 -0.055413331108638886 MEETVYNLF 9 Unmodified _MEETVYNLF_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.510964 1144.51106 0.040728 1.5579E-05 -1.5427 -0.00059012 -1.502 -0.00057454 382.5103074965559 51.704 0.17136 51.27 51.174 51.346 -0.43367 -0.0023668 8.0869E-05 NaN 8.1555 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3379100 + 39752 19751 26554 27068 -0.055413331108638886 MEETVYNLF 9 Unmodified _MEETVYNLF_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.510964 1144.51106 -0.2586 -9.8919E-05 -1.6394 -0.0006271 -1.898 -0.00072602 382.5101369488106 51.329 0.29473 51.275 51.107 51.401 -0.053871 0.0023668 -3.0084E-05 NaN 8.1555 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5103300 + 39753 19751 26554 27068 -0.055413331108638886 MEEVSPIGVP 10 Unmodified _MEEVSPIGVP_ 0 0 0 nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1 nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|O94854|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2686157226562 2 529.26535 1056.51615 0.59521 0.00031502 1.3242 0.00070085 1.9194 0.0010159 529.266214187246 66.777 0.37834 66.777 66.637 67.016 0 23 17 2 0 0 0 0.6606 1 37206 37206 7.2892 0.56607 1 1381100 39754 16177 26555 27069 46594 46594 -0.009850292482042278 MEFIELWHR 9 Unmodified _MEFIELWHR_ 0 0 0 ENST00000520337.1_1_8:104388144-104390286:+|nuORF ENST00000520337.1_1_8:104388144-104390286:+|nuORF ENST00000520337.1_1_8:104388144-104390286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.81396484375 2 630.813333 1259.61211 0.088438 5.5788E-05 0.99639 0.00062854 1.0848 0.00068432 630.81368432847 97.995 0.35471 97.752 97.664 98.019 -0.24277 32 13 3 0 0 0 0.6149 1 53602 53602 0.45834 0.057624 1 1610600 39755 14724 26556 27070 46595 46595 -0.007308366174811454 MEFLAVDMQI 10 Unmodified _MEFLAVDMQI_ 0 0 0 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2918701171875 2 598.788135 1195.56172 0.70556 0.00042248 0.4814 0.00028826 1.187 0.00071074 598.788352267865 62.503 0.28745 62.015 61.831 62.119 -0.48764 35 13 4 0 0 0 0.35903 1 34004 34004 24.021 2.4836 1 7565400 + 39756 21050 26557 27071 46596 46596 -0.028241270574881128 MEFLAVDMQI 10 Unmodified _MEFLAVDMQI_ 0 0 0 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.788135 1195.56172 0.70556 0.00042248 0.4814 0.00028826 1.187 0.00071074 598.788352267865 62.503 0.28745 62.015 61.831 62.119 -0.48764 0 0 NaN 24.021 35 13 4 NaN NaN NaN NaN 0 NaN NaN 0 7565400 + 39757 21050 26557 27071 -0.028241270574881128 MEGIMNPYTAL 11 Unmodified _MEGIMNPYTAL_ 0 0 0 nc|ENSG00000162761|Q8TE12-2|LMX1A;ENSG00000162761|ENST00000342310|LMX1A nc|ENSG00000162761|Q8TE12-2|LMX1A nc|ENSG00000162761|Q8TE12-2|LMX1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8629455566406 3 413.86312 1238.56753 0.33681 0.00013939 -0.30643 -0.00012682 0.030385 1.2575E-05 413.8630549654738 49.37 0.2102 49.37 49.277 49.487 0 22 9 3 0 0 0 0.71341 1 27181 27181 1.2148 0 1 3534000 39758 6908 26558 27072 46597 46597 -0.04221028545816807 MEHRKITAGKF 11 Unmodified _MEHRKITAGKF_ 0 0 0 REV__nc|ENSG00000082126|Q96JB8-3|MPP4 REV__nc|ENSG00000082126|Q96JB8-3|MPP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.9082336425781 3 439.908052 1316.70233 0.22387 9.8482E-05 0.92184 0.00040553 1.1457 0.00050401 439.9082789919794 62.647 0.22039 62.647 62.529 62.749 0 14 9 2 0 0 0 0.71341 1 34954 34954 1.2148 0.4383 1 587920 + 39759 27751 26559 27073 46598 46598 0.05664212710939864 MEHTACAE 8 Unmodified _MEHTACAE_ 0 0 0 REV__ENSG00000153237|ENST00000283233|CCDC148 REV__ENSG00000153237|ENST00000283233|CCDC148 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.169677734375 2 446.170395 890.326238 1.0396 0.00046385 -1.297 -0.00057869 -0.2574 -0.00011485 446.1696110285256 48.515 0.97855 43.119 42.594 43.572 -5.3961 109 58 3 0 0 0 0.80676 1 29910 29910 2.5775 0 1 43647000 + 39760 21163 26560 27074 46599 46599 -0.12331219462237186 MEHYLDNGER 10 Unmodified _MEHYLDNGER_ 0 0 0 REV__ENSG00000110955|ENST00000262030|ATP5F1B REV__ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.2774658203125 2 632.274769 1262.53499 -0.17718 -0.00011203 1.5394 0.0009733 1.3622 0.00086127 632.2758340660026 44.401 0.35841 44.401 44.305 44.664 0 30 18 3 0 0 0 0.24625 1 24134 24134 30.637 14.789 1 9538200 + 39761 18731 26561 27075 46600 46600 -0.0857809962446936 MEKSLEFWRA 10 Unmodified _MEKSLEFWRA_ 0 0 0 ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1 ENST00000480273.5_1_20:62319266-62327135:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8842163085938 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 77.48 1 77.48 76.98 77.98 0 0 0 0 1.0004 1 43072 43072 0.62683 0.17231 1 39762 10817 26562 27076 46601 46601 -0.002748713086020871 MEKYQDRGL 9 Unmodified _MEKYQDRGL_ 0 0 0 REV__nc|ENSG00000167968|Q92874-2|DNASE1L2 REV__nc|ENSG00000167968|Q92874-2|DNASE1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2767333984375 2 570.279323 1138.54409 0.66705 0.0003804 -2.8577 -0.0016297 -2.1907 -0.0012493 570.2773550737917 84.637 0.28249 84.137 84.02 84.302 -0.49961 21 12 3 0 0 0 0.58145 1 46282 46282 4.3292 2.0265 1 847160 + 39763 22267 26563 27077 46602 46602 -0.019637062681340467 MEMEESKNRF 10 Unmodified _MEMEESKNRF_ 0 0 0 REV__nc|ENSG00000163749|Q5M9N0|CCDC158 REV__nc|ENSG00000163749|Q5M9N0|CCDC158 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8725891113281 3 434.193529 1299.55876 -0.70735 -0.00030713 -4.3881 -0.0019053 -5.0954 -0.0022124 434.191066912689 32.946 0.21754 32.946 32.831 33.049 0 24 10 3 0 0 0 0.2384 1 17244 17244 5.4027 3.4963 1 3016700 + 39764 21811 26564 27078 46603 46603 -0.07904002182294789 MEMRVLCRKM 10 Unmodified _MEMRVLCRKM_ 0 0 0 REV__ENST00000563984.1_1_16:46717374-46723045:-|nuORF REV__ENST00000563984.1_1_16:46717374-46723045:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8851928710938 3 432.885096 1295.63346 NaN NaN NaN NaN NaN NaN NaN 106.9 1 100.73 100.23 101.23 -6.1757 0 0 0 0.9997 1 71537 71537 0.69767 0 1 + 39765 28886 26565 27079 46604 46604 -0.002532341762616852 MENIEVYHEF 10 Unmodified _MENIEVYHEF_ 0 0 0 ENSG00000137492|ENST00000260045|THAP12;ENST00000551685.2_1_12:43963803-43964301:-|nuORF;ENST00000456373.1_1_10:54172458-54172827:+|nuORF ENSG00000137492|ENST00000260045|THAP12 ENSG00000137492|ENST00000260045|THAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.789794921875 2 655.789721 1309.56489 -0.72825 -0.00047758 0.21118 0.00013849 -0.51707 -0.00033909 655.7899778557135 28.667 0.29767 28.667 28.483 28.781 0 25 14 2 0 0 0 0.65023 1 14859 14859 2.9952 0.49676 1 2371800 39766 4939 26566 27080 46605 46605 -0.07751160679117675 MEPGGWASGW 10 Unmodified _MEPGGWASGW_ 0 0 0 ENST00000400762.7_1_4:1193492-1195154:-|nuORF ENST00000400762.7_1_4:1193492-1195154:-|nuORF ENST00000400762.7_1_4:1193492-1195154:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.2503662109375 2 539.226559 1076.43857 0.5826 0.00031415 -0.94342 -0.00050872 -0.36082 -0.00019457 539.2258679345211 45.616 0.41665 40.661 40.477 40.894 -4.9549 62 27 3 0 0 0 0.22811 1 28168 28168 14.838 7.549 1 58509000 39767 12877 26567 27081 46606 46606 -0.09659622393746758 MEPKRIRE 8 Unmodified _MEPKRIRE_ 0 0 0 ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK ENSG00000115956|ENST00000234313|PLEK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7906494140625 2 529.792401 1057.57025 NaN NaN NaN NaN NaN NaN NaN 1.9973 1 1.9973 1.4973 2.4973 0 0 0 0 0.97444 1 972 972 0.79363 0 1 39768 3179 26568 27082 46607 46607 0.04376607694007362 MEPPPVTNEP 10 Unmodified _MEPPPVTNEP_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20221201_MKP_PDAC_01 4 555.7615356445312 2 555.760432 1109.50631 NaN NaN NaN NaN NaN NaN NaN 43.868 1 39.103 38.603 39.603 -4.7648 0 0 0 0.55063 1 26704 26704 23.79 1.0535 1 + 39769 23822 26569 27083 46608 46608 -0.04406217253608702 MEQCTSFMF 9 Unmodified _MEQCTSFMF_ 0 0 0 REV__ENST00000578646.5_1_18:19429261-19429321:+|nuORF REV__ENST00000578646.5_1_18:19429261-19429321:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.1471557617188 3 375.146751 1122.41842 -0.47132 -0.00017682 1.0941 0.00041045 0.62277 0.00023363 375.14727742856024 41.51 0.36675 41.51 41.364 41.731 0 90 18 7 0 0 0 0.59218 1 22471 22471 0.96228 0 1 124620000 + 39770 29044 26570 27084 46609 46609 -0.1378887744021995 MEQILPILL 9 Unmodified _MEQILPILL_ 0 0 0 REV__ENST00000400000.6_1_18:9954209-9954779:+|nuORF REV__ENST00000400000.6_1_18:9954209-9954779:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5391540527344 3 357.215711 1068.6253 0.32317 0.00011544 -0.60949 -0.00021772 -0.28631 -0.00010228 357.21495264876063 48.084 0.27799 48.045 47.946 48.224 -0.038643 19 13 2 0 0 0 0.209 1 25978 25978 7.609 4.0125 1 1151800 + 39771 26592 26571 27085 46610 46610 0.09373601441939172 MEQLEKELN 9 Unmodified _MEQLEKELN_ 0 0 0 REV__ENSG00000168724|ENST00000648817|DNAJC21 REV__ENSG00000168724|ENST00000648817|DNAJC21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7882690429688 2 567.278989 1132.54342 0.81076 0.00045992 1.3385 0.00075928 2.1492 0.0012192 567.2786761211421 58.245 0.78607 52.218 51.736 52.522 -6.0275 113 43 4 0 0 0 0.19349 1 36997 36997 31.268 0.5649 1 258330000 + 39772 22335 26572 27086 46611 46611 -0.01754545707831312 MEQLERRR 8 Unmodified _MEQLERRR_ 0 0 0 ENST00000549136.1_1_12:95869939-95877074:+|nuORF ENST00000549136.1_1_12:95869939-95877074:+|nuORF ENST00000549136.1_1_12:95869939-95877074:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 373.2030029296875 3 373.201346 1116.58221 NaN NaN NaN NaN NaN NaN NaN 30.037 1 26.54 26.04 27.04 -3.497 0 0 0 0.95254 1 16925 16925 11.495 6.092 1 39773 15147 26573 27087 46612 46612 0.02858224437204626 MERELNPY 8 Unmodified _MERELNPY_ 0 0 0 nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7171630859375 2 526.247492 1050.48043 0.5365 0.00028233 -1.3062 -0.00068737 -0.76968 -0.00040504 526.7504607354065 61.361 0.17599 61.361 61.235 61.411 0 12 7 2 0 0 0 8.7369 1 34192 34192 2.8892 0 1 358090 39774 6182 26574 27088 46613 46613 -0.04279066705225887 MERKLYSW 8 Unmodified _MERKLYSW_ 0 0 0 ENST00000520186.1_1_2:73500198-73511486:-|nuORF ENST00000520186.1_1_2:73500198-73511486:-|nuORF ENST00000520186.1_1_2:73500198-73511486:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7835083007812 2 556.781502 1111.54845 1.1029 0.00061407 0.64957 0.00036167 1.7525 0.00097574 556.7820704818505 85.76 0.67334 79.585 79.462 80.136 -6.1757 63 37 2 0 0 0 0.66338 1 56659 56659 20.454 6.9457 1 21489000 39775 14722 26575 27089 46614 46614 -0.0028619705458368117 MESEKNYDEF 10 Unmodified _MESEKNYDEF_ 0 0 0 ENSG00000170231|ENST00000402432|FABP6;nc|ENSG00000170231|P51161-2|FABP6 ENSG00000170231|ENST00000402432|FABP6 ENSG00000170231|ENST00000402432|FABP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.1766357421875 3 431.176421 1290.50743 -0.56916 -0.00024541 0.79644 0.00034341 0.22728 9.7996E-05 431.1768724649062 28.569 0.17412 28.569 28.467 28.641 0 22 8 4 0 0 0 0.70951 1 14778 14778 0.77653 0.32202 1 5323700 39776 7961 26576 27090 46615 46615 -0.1262004767536382 MESKLIPVL 9 Unmodified _MESKLIPVL_ 0 0 0 ENST00000466710.1_1_2:231314919-231326045:+|nuORF ENST00000466710.1_1_2:231314919-231326045:+|nuORF ENST00000466710.1_1_2:231314919-231326045:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.30517578125 2 515.304278 1028.594 1.1092 0.00057155 0.21891 0.00011281 1.3281 0.00068436 515.3044379589496 100.35 0.14027 94.178 94.088 94.228 -6.1757 13 8 2 0 0 0 0.03568 1 67116 67116 52.268 0 1 14366000 39777 13760 26577 27091 46616 46616 0.0808502840784513 METHIMHTF 9 Unmodified _METHIMHTF_ 0 0 0 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.75634765625 2 573.757169 1145.49979 0.57663 0.00033084 -1.9003 -0.0010903 -1.3237 -0.00075949 573.75583431632 53.389 0.24257 52.937 52.823 53.065 -0.45173 25 11 3 0 0 0 0.41742 1 28864 28864 11.64 2.2929 1 2808200 39778 4661 26578 27092 46617 46617 -0.06714433685942822 METHIMHTF 9 Unmodified _METHIMHTF_ 0 0 0 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7555541992188 2 573.757169 1145.49979 0.088585 5.0826E-05 -0.90388 -0.00051861 -0.8153 -0.00046778 573.7559369276647 53.238 0.14318 53.174 53.098 53.241 -0.063419 9 6 2 0 0 0 0.41742 1 28878 28878 11.64 3.047 1 1016300 39779 4661 26578 27092 46618 46618 -0.06714433685942822 METHIMHTF 9 Unmodified _METHIMHTF_ 0 0 0 ENST00000483155.5_1_9:79002317-79008728:-|nuORF;ENSG00000135002|ENST00000376736|RFK ENST00000483155.5_1_9:79002317-79008728:-|nuORF ENST00000483155.5_1_9:79002317-79008728:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7568359375 2 573.757169 1145.49979 NaN NaN NaN NaN NaN NaN NaN 53.044 1 52.981 52.481 53.481 -0.063423 0 0 0 0.6306 1 28753 28753 11.64 1.4569 1 39780 4661 26578 27092 46619 46619 -0.06714433685942822 METTSLLL 8 Oxidation (M) _M(Oxidation (M))ETTSLLL_ M(1)ETTSLLL M(40)ETTSLLL 0 0 1 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2443542480469 2 462.241344 922.468134 0.75267 0.00034792 2.1571 0.00099711 2.9098 0.001345 462.2424667449365 28.882 0.3144 25.733 25.497 25.811 -3.1482 26 15 2 0 0 0 0.44122 1 16071 16071 40.449 8.3316 1 65374000 39781 9585 26579 27093 46620 46620 1563 0.0037989683175965183 METTSLLL 8 Unmodified _METTSLLL_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2448425292969 2 454.243886 906.47322 0.87196 0.00039608 0.95469 0.00043366 1.8267 0.00082975 454.24441643732075 38.237 0.47873 33.868 33.671 34.15 -4.3689 80 29 4 0 0 0 0.5953 1 22705 22705 26.341 0 1 122620000 39782 9585 26579 27094 46621 46621 0.016242006943684828 METYEDQHS 9 Unmodified _METYEDQHS_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.4818420410156 3 380.481844 1138.4237 NaN NaN NaN NaN NaN NaN NaN 88.645 1 88.14 87.64 88.64 -0.50423 0 0 0 0.85798 1 48479 48479 0.23584 0 1 39783 8120 26580 27095 46622 46622 -0.13997159052382813 MEVCKRFDL 9 Unmodified _MEVCKRFDL_ 0 0 0 REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|44|3|sense REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|44|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7816162109375 2 570.780644 1139.54674 NaN NaN NaN NaN NaN NaN NaN 84.549 1 84.05 83.55 84.55 -0.49961 0 0 0 0.84369 1 46267 46267 2.3027 0 1 + 39784 30112 26581 27096 46623 46623 -0.01745574134815797 MEVDQPEP 8 Unmodified _MEVDQPEP_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7061767578125 2 472.705125 943.395698 0.53551 0.00025314 1.1229 0.00053081 1.6584 0.00078395 472.7056801576059 53.152 0.37091 53.152 52.982 53.353 0 27 16 2 0 0 0 0.79783 1 29426 29426 7.9102 1.187 1 2862800 39785 1813 26582 27097 46624 46624 -0.07826437241828899 MEWNSRCK 8 Unmodified _MEWNSRCK_ 0 0 0 REV__ENST00000565221.5_1_16:8895734-8904950:+|nuORF REV__ENST00000565221.5_1_16:8895734-8904950:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.876953125 3 351.825 1052.45317 1.8228 0.00064129 2.255 0.00079336 4.0777 0.0014346 351.82547681409505 20.028 0.1975 17.371 17.239 17.436 -2.6564 17 10 2 0 0 0 8.7369 1 10579 10579 3.5965 0 1 1148800 + 39786 28908 26583 27098 46625 46625 -0.07095873517255313 MEWQSFNIEF 10 Unmodified _MEWQSFNIEF_ 0 0 0 REV__ENSG00000167637|ENST00000618787|ZNF283 REV__ENSG00000167637|ENST00000618787|ZNF283 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.1986999511719 3 444.197268 1329.56997 1.0971 0.00048735 1.8649 0.00082839 2.9621 0.0013157 444.19820604041644 52.615 0.20273 52.556 52.426 52.629 -0.058918 13 9 2 0 0 0 0.71123 1 28529 28529 0.69767 0.07084 1 1696000 + 39787 22232 26584 27099 46626 46626 -0.08162856816534259 MEWQSFNIEF 10 Unmodified _MEWQSFNIEF_ 0 0 0 REV__ENSG00000167637|ENST00000618787|ZNF283 REV__ENSG00000167637|ENST00000618787|ZNF283 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 444.197268 1329.56997 1.0971 0.00048735 1.8649 0.00082839 2.9621 0.0013157 444.19820604041644 52.615 0.20273 52.556 52.426 52.629 -0.058918 0.018655 -0.00031462 NaN 0.69767 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1696000 + 39788 22232 26584 27099 -0.08162856816534259 MEWQVLFI 8 Unmodified _MEWQVLFI_ 0 0 0 ENST00000436236.1_1_3:31659444-31661209:+|nuORF ENST00000436236.1_1_3:31659444-31661209:+|nuORF ENST00000436236.1_1_3:31659444-31661209:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2761840820312 2 533.275521 1064.53649 NaN NaN NaN NaN NaN NaN NaN 97.219 1 96.976 96.476 97.476 -0.24277 0 0 0 0.9706 1 53088 53088 6.3541 0.14832 1 39789 13333 26585 27100 46627 46627 0.006801862022484784 MEWRKMMSE 9 Unmodified _MEWRKMMSE_ 0 0 0 CPE|p.W467R|1|0.04|ENSG00000109472|chr4:165497578-165497578|T/C|missense_variant CPE|p.W467R|1|0.04|ENSG00000109472|chr4:165497578-165497578|T/C|missense_variant CPE|p.W467R|1|0.04|ENSG00000109472|chr4:165497578-165497578|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.1837158203125 3 409.848817 1226.52462 -0.040122 -1.6444E-05 0.41513 0.00017014 0.375 0.00015369 410.18353646776654 45.786 0.20256 45.758 45.642 45.844 -0.028011 19 9 3 0 0 0 0.5029 1 24619 24619 4.5289 0.19963 1 2277200 39790 218 26586 27101 46628 46628 -0.07958121874889912 MEYKVDPEHL 10 Unmodified _MEYKVDPEHL_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.7991943359375 2 630.800088 1259.58562 NaN NaN NaN NaN NaN NaN NaN 67.86 1 67.377 66.877 67.877 -0.48218 0 0 0 0.99248 1 37078 37078 1.4819 0.15237 1 39791 313 26587 27102 46629 46629 -0.033785702994691746 MEYQNATIFR 10 Unmodified _MEYQNATIFR_ 0 0 0 REV__ENSG00000156298|ENST00000378482|TSPAN7 REV__ENSG00000156298|ENST00000378482|TSPAN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.8743896484375 3 424.872895 1271.59686 -0.29975 -0.00012736 1.9002 0.00080734 1.6004 0.00067998 424.8737528603556 23.245 0.22013 23.245 23.126 23.347 0 24 10 3 0 0 0 0.71413 1 11822 11822 0.56317 0 1 787190 + 39792 21326 26588 27103 46630 46630 -0.028077482053504355 MFCPSPELHFN 11 Unmodified _MFCPSPELHFN_ 0 0 0 ENST00000381103.6_1_5:61681470-61681683:+|nuORF ENST00000381103.6_1_5:61681470-61681683:+|nuORF ENST00000381103.6_1_5:61681470-61681683:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.5264892578125 3 441.194981 1320.56311 -0.4483 -0.00019779 -3.1955 -0.0014098 -3.6438 -0.0016076 441.1933902167962 27.367 0.23533 27.367 27.253 27.488 0 20 11 2 0 0 0 0.70435 1 14115 14115 3.8459 0.49018 1 5219300 39793 12614 26589 27104 46631 46631 -0.08434492968717677 MFDAVVTQL 9 Unmodified _MFDAVVTQL_ 0 0 0 ENST00000374794.7_2_10:34759149-34806035:-|nuORF ENST00000374794.7_2_10:34759149-34806035:-|nuORF ENST00000374794.7_2_10:34759149-34806035:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.2623901367188 2 512.26261 1022.51067 NaN NaN NaN NaN NaN NaN NaN 84.796 1 78.62 78.12 79.12 -6.1757 0 0 0 0.50124 1 55808 55808 15.847 4.2069 1 39794 12457 26590 27105 46632 46632 0.0003129195997644274 MFDEPVLL 8 Oxidation (M) _M(Oxidation (M))FDEPVLL_ M(1)FDEPVLL M(47)FDEPVLL 0 0 1 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.4794921875 1 979.480496 978.47322 0.10056 9.8498E-05 0.39622 0.00038809 0.49678 0.00048658 979.4810174936863 76.238 0.50261 76.238 76.086 76.589 0 38 20 2 0 0 0 0.37649 3 42443 42343;42443;42537 46.921 20.58 1 1466100 39795 315 26591 27106 46633;46634;46635 46634 31 -0.016877993056368723 MFDIVGTHL 9 Oxidation (M) _M(Oxidation (M))FDIVGTHL_ M(1)FDIVGTHL M(71)FDIVGTHL 0 0 1 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7605590820312 2 524.760235 1047.50592 0.64077 0.00033625 -1.1356 -0.0005959 -0.49479 -0.00025965 524.7604172349209 61.059 0.54867 61.059 60.885 61.433 0 65 23 4 0 0 0 0.013323 2 34004 34004;34106 71.134 38.828 1 3006500 39796 6609 26592 27107 46636;46637 46636 1154 -0.015935921828031496 MFDIVGTHL 9 Oxidation (M) _M(Oxidation (M))FDIVGTHL_ M(1)FDIVGTHL M(71)FDIVGTHL 0 0 1 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2611083984375 2 524.760235 1047.50592 -0.022085 -1.1589E-05 0.71391 0.00037463 0.69182 0.00036304 524.7607244980196 61.686 0.46389 61.198 60.881 61.345 -0.48764 70 21 4 0 0 0 0.013323 2 33472 33472;33598 71.134 31.176 1 13555000 39797 6609 26592 27107 46638;46639 46638 1154 -0.015935921828031496 MFDIVGTHL 9 Oxidation (M) _M(Oxidation (M))FDIVGTHL_ M(1)FDIVGTHL M(55)FDIVGTHL 0 0 1 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.8056030273438 2 524.760235 1047.50592 0.82637 0.00043365 -0.53947 -0.00028309 0.2869 0.00015055 524.7597053159354 67.29 0.61658 61.114 60.769 61.385 -6.1757 53 34 2 0 0 0 0.047927 1 43832 43832 54.774 14.816 1 16426000 39798 6609 26592 27107 46640 46640 1154 -0.015935921828031496 MFDIVGTHL 9 Unmodified _MFDIVGTHL_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7630615234375 2 516.762778 1031.511 NaN NaN NaN NaN NaN NaN NaN 70.675 1 70.198 69.698 70.698 -0.47735 0 0 0 0.08978 1 38669 38669 46.021 29.079 1 39799 6609 26592 27108 46641 46641 -0.003492883201715813 MFDIVGTHL 9 Unmodified _MFDIVGTHL_ 0 0 0 ENSG00000158796|ENST00000368006|DEDD;nc|ENSG00000158796|O75618-2|DEDD ENSG00000158796|ENST00000368006|DEDD ENSG00000158796|ENST00000368006|DEDD MSMS AL20221201_MKP_PDAC_01 4 516.763427734375 2 516.762778 1031.511 NaN NaN NaN NaN NaN NaN NaN 80.385 1 74.209 73.709 74.709 -6.1757 0 0 0 0.12337 1 52740 52740 39.957 7.8404 1 39800 6609 26592 27108 46642 46642 -0.003492883201715813 MFDKDVVML 9 2 Oxidation (M) _M(Oxidation (M))FDKDVVM(Oxidation (M))L_ M(1)FDKDVVM(1)L M(42)FDKDVVM(42)L 0 0 2 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-3|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2678833007812 2 565.267035 1128.51952 0.4295 0.00024278 -0.28142 -0.00015908 0.14808 8.3703E-05 565.2670001202436 51.096 0.3409 50.683 50.438 50.778 -0.41351 43 16 3 0 0 0 0.06294 1 27455 27455 41.84 21.386 1 4587400 39801 550 26593 27109 46643 46643 77;78 -0.039601024658395545 MFDLTIFTL 9 Unmodified _MFDLTIFTL_ 0 0 0 REV__BCDIN3D|p.A128T|1|0.13|ENSG00000186666|chr12:49838868-49838868|C/T|missense_variant REV__BCDIN3D|p.A128T|1|0.13|ENSG00000186666|chr12:49838868-49838868|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8193969726562 2 550.788461 1099.56237 0.56059 0.00030877 1.5706 0.00086504 2.1311 0.0011738 550.788484512852 71.6 0.24413 71.123 71.022 71.266 -0.47609 11 9 2 0 0 0 0.19891 1 39174 39174 11.64 0 1 403570 + 39802 16745 26594 27110 46644 46644 0.016570356538750275 MFEGYADRF 9 Unmodified _MFEGYADRF_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2491455078125 2 568.247492 1134.48043 0.75036 0.00042639 1.146 0.00065123 1.8964 0.0010776 568.2487464028153 75.731 0.20268 75.254 75.169 75.372 -0.47714 18 8 3 0 0 0 0.5029 1 41469 41469 7.2892 2.5332 1 1558700 + 39803 19600 26595 27111 46645 46645 -0.08143066705224555 MFEGYADRF 9 Unmodified _MFEGYADRF_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.247492 1134.48043 0.75036 0.00042639 1.146 0.00065123 1.8964 0.0010776 568.2487464028153 75.731 0.20268 75.254 75.169 75.372 -0.47714 -0.012002 -0.0021324 NaN 7.2892 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1558700 + 39804 19600 26595 27111 -0.08143066705224555 MFEQFAQCK 9 Unmodified _MFEQFAQCK_ 0 0 0 REV__nc|ENSG00000172828|Q6UWW8-2|CES3 REV__nc|ENSG00000172828|Q6UWW8-2|CES3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.25390625 2 566.25172 1130.48889 NaN NaN NaN NaN NaN NaN NaN 17.04 1 17.04 16.54 17.54 0 0 0 0 0.84892 1 8363 8363 1.6526 0.85899 1 + 39805 22679 26596 27112 46646 46646 -0.0711383606023901 MFFFPIFIWHK 11 Unmodified _MFFFPIFIWHK_ 0 0 0 REV__ENSG00000184698|ENST00000642046|OR51M1 REV__ENSG00000184698|ENST00000642046|OR51M1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.896728515625 2 756.896669 1511.77878 NaN NaN NaN NaN NaN NaN NaN 94.141 1 94.141 93.641 94.641 0 0 0 0 0.9435 1 52040 52040 0 0 1 + 39806 23437 26597 27113 46647 46647 0.04336636278230799 MFFLGQMGR 9 Unmodified _MFFLGQMGR_ 0 0 0 ENST00000549197.1_1_14:75301954-75302005:+|nuORF ENST00000549197.1_1_14:75301954-75302005:+|nuORF ENST00000549197.1_1_14:75301954-75302005:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.764892578125 2 543.764797 1085.51504 NaN NaN NaN NaN NaN NaN NaN 92.828 1 92.828 92.328 93.328 0 0 0 0 0.8622 1 51327 51327 0 0 1 39807 15148 26598 27114 46648 46648 -0.02429522098077541 MFFLWGFGF 9 Unmodified _MFFLWGFGF_ 0 0 0 REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A REV__nc|ENSG00000188092|B7ZAQ6-4|GPR89A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2740478515625 2 576.272781 1150.53101 0.58402 0.00033655 -1.1182 -0.0006444 -0.5342 -0.00030785 576.2720578585527 87.553 0.88803 87.049 86.42 87.308 -0.50423 94 38 4 0 0 0 0.53666 2 47757 47757;47958 5.2307 0.47466 1 5597400 + 39808 19095 26599 27115 46649;46650 46649 -0.038234925895267224 MFFRCFQIF 9 Unmodified _MFFRCFQIF_ 0 0 0 ENST00000337179.9_1_12:93793193-93793316:+|nuORF ENST00000337179.9_1_12:93793193-93793316:+|nuORF ENST00000337179.9_1_12:93793193-93793316:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.7958984375 2 619.796097 1237.57764 0.95375 0.00059113 -1.2238 -0.00075852 -0.27007 -0.00016739 619.7952254397242 66.868 0.39368 66.886 66.654 67.047 0.018028 38 18 3 0 0 0 0.25297 1 36700 36700 19.439 4.6007 1 6226200 39809 11920 26600 27116 46651 46651 -0.03164376029940286 MFFRQSFPCN 10 Unmodified _MFFRQSFPCN_ 0 0 0 REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.1899719238281 3 426.191571 1275.55288 NaN NaN NaN NaN NaN NaN NaN 14.687 1 14.687 14.187 15.187 0 0 0 0 1.0019 1 7004 7004 0.15932 0 1 + 39810 26854 26601 27117 46652 46652 -0.07387055903268447 MFFRQSFPCN 10 Unmodified _MFFRQSFPCN_ 0 0 0 REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF REV__ENST00000422221.1_1_X:40936263-40936386:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.1918640136719 3 426.191571 1275.55288 NaN NaN NaN NaN NaN NaN NaN 17.536 1 17.536 17.036 18.036 0 0 0 0 1.0019 1 8649 8649 0.15932 0.075971 1 + 39811 26854 26601 27117 46653 46653 -0.07387055903268447 MFHKECLPM 9 Unmodified _MFHKECLPM_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;ENST00000490924.1_1_7:38765848-38766604:-|nuORF nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1742553710938 3 379.174753 1134.50243 NaN NaN NaN NaN NaN NaN NaN 68.287 1 68.287 67.787 68.787 0 0 0 0 0.84369 1 38069 38069 1.1933 0.56652 1 39812 347 26602 27118 46654 46654 -0.059443015526539966 MFKKKKKK 8 Unmodified _MFKKKKKK_ 0 0 0 nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENSG00000165923|ENST00000525123|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.9035034179688 3 355.90369 1064.68924 -0.11489 -4.0889E-05 -0.76914 -0.00027374 -0.88403 -0.00031463 355.9033602382616 54.18 0.41747 54.113 53.941 54.359 -0.066936 59 20 5 0 0 0 0.81107 1 29502 29502 0 0 1 5556300 39813 7408 26603 27119 46655 46655 0.1594842638951377 MFKKKKKK 8 Unmodified _MFKKKKKK_ 0 0 0 nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENSG00000165923|ENST00000525123|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.9033203125 3 355.90369 1064.68924 0.66032 0.00023501 -1.2604 -0.00044858 -0.60009 -0.00021357 355.9029887636632 57.366 0.45259 57.3 57.161 57.614 -0.066036 50 22 3 0 0 0 0.81107 1 31233 31233 0 0 1 3124000 39814 7408 26603 27119 46656 46656 0.1594842638951377 MFKKKKKK 8 Unmodified _MFKKKKKK_ 0 0 0 nc|ENSG00000165923|Q5U5Z8-3|AGBL2;nc|ENSG00000165923|Q5U5Z8-2|AGBL2;ENSG00000165923|ENST00000525123|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 nc|ENSG00000165923|Q5U5Z8-3|AGBL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.90369 1064.68924 0.80816 0.00028763 -0.77847 -0.00027706 0.029687 1.0566E-05 355.90297797965906 54.429 0.15367 54.429 54.352 54.505 0 0.15807 -9.1721E-06 NaN 0 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 392070 39815 7408 26603 27119 0.1594842638951377 MFKLILPV 8 Unmodified _MFKLILPV_ 0 0 0 ENST00000436996.1_1_22:28318344-28318410:+|nuORF ENST00000436996.1_1_22:28318344-28318410:+|nuORF ENST00000436996.1_1_22:28318344-28318410:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.8017883300781 2 480.801174 959.587796 0.26709 0.00012842 0.76657 0.00036857 1.0337 0.00049698 480.8014710227961 84.724 0.34702 84.724 84.542 84.889 0 30 16 2 0 0 0 0.81107 2 46914 46914;47016 0 0 1 1111600 39816 13340 26604 27120 46657;46658 46657 0.10638554966988067 MFKLILPV 8 Unmodified _MFKLILPV_ 0 0 0 ENST00000436996.1_1_22:28318344-28318410:+|nuORF ENST00000436996.1_1_22:28318344-28318410:+|nuORF ENST00000436996.1_1_22:28318344-28318410:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.8008117675781 2 480.801174 959.587796 -0.13875 -6.6713E-05 0.013004 6.2523E-06 -0.12575 -6.0461E-05 480.801049505671 84.932 0.49597 84.995 84.743 85.239 0.063171 59 20 4 0 0 0 0.81107 2 47011 47011;47119 0 0 1 202660000 39817 13340 26604 27120 46659;46660 46659 0.10638554966988067 MFKPGMVV 8 Unmodified _MFKPGMVV_ 0 0 0 ENST00000585624.1_1_19:38169626-38177384:-|nuORF ENST00000585624.1_1_19:38169626-38177384:-|nuORF ENST00000585624.1_1_19:38169626-38177384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 909.4749755859375 1 908.473243 907.465966 0.17483 0.00015883 0.12148 0.00011036 0.29631 0.00026919 908.4732960399759 61.265 0.45802 61.265 60.975 61.433 0 48 19 3 0 0 0 0.81107 1 34247 34247 0 0 1 4118700 39818 15611 26605 27121 46661 46661 0.008531896129511551 MFNPMYALF 9 Oxidation (M) _M(Oxidation (M))FNPMYALF_ M(0.987)FNPM(0.013)YALF M(19)FNPM(-19)YALF 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2735595703125 2 575.259013 1148.50347 1.52 0.00087438 -1.4665 -0.00084364 0.053446 3.0745E-05 575.2574803959184 101 0.10492 94.822 94.764 94.869 -6.1757 11 5 3 0 0 0 0.06187 1 67664 67664 42.095 26.247 2 21850000 39819 1444 26606 27122 46662 46662 247 -0.06483763912137874 MFNPMYALF 9 Oxidation (M) _M(Oxidation (M))FNPMYALF_ M(0.998)FNPM(0.002)YALF M(28)FNPM(-28)YALF 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000474971.1_1_X:53563041-53563582:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS AL20221201_MKP_PDAC_01 4 575.2598266601562 2 575.259013 1148.50347 NaN NaN NaN NaN NaN NaN NaN 101.03 1 94.854 94.354 95.354 -6.1757 0 0 0 0.071041 1 67705 67705 50.855 40.031 2 39820 1444 26606 27122 46663 46663 247 -0.06483763912137874 MFQQIFNIQL 10 Unmodified _MFQQIFNIQL_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MSMS AL20221201_MKP_PDAC_01 4 427.8945007324219 3 427.893519 1280.65873 NaN NaN NaN NaN NaN NaN NaN 41.459 1 36.851 36.351 37.351 -4.6079 0 0 0 0.61917 1 24900 24900 12.873 1.8073 1 39821 9681 26607 27123 46664 46664 0.02962603213836701 MFRQQLVSY 9 Unmodified _MFRQQLVSY_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2017822265625 3 391.202465 1170.58556 -0.48457 -0.00018956 -1.5816 -0.00061871 -2.0661 -0.00080828 391.20177497569915 36.363 0.24176 36.114 35.952 36.193 -0.2497 20 10 3 0 0 0 0.4887 1 19061 19061 8.1555 0.54658 1 4224600 + 39822 19147 26608 27124 46665 46665 0.007094744912137685 MFRQQLVSY 9 Unmodified _MFRQQLVSY_ 0 0 0 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 REV__nc|ENSG00000118407|Q7Z7B0-3|FILIP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.202465 1170.58556 -0.48457 -0.00018956 -1.5816 -0.00061871 -2.0661 -0.00080828 391.20177497569915 36.363 0.24176 36.114 35.952 36.193 -0.2497 0 0 NaN 8.1555 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4224600 + 39823 19147 26608 27124 0.007094744912137685 MFSDQWEVG 9 Unmodified _MFSDQWEVG_ 0 0 0 REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3 REV__nc|ENSG00000197506|Q9HAS3-2|SLC28A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2182006835938 2 549.731674 1097.4488 NaN NaN NaN NaN NaN NaN NaN 20.826 1 20.826 20.326 21.326 0 0 0 0 0.85447 1 10498 10498 0.45834 0 1 + 39824 23933 26609 27125 46666 46666 -0.09603059459186625 MFSFYSGDMFP 11 Unmodified _MFSFYSGDMFP_ 0 0 0 REV__nc|ENSG00000151623|P08235-2|NR3C2 REV__nc|ENSG00000151623|P08235-2|NR3C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.5146789550781 3 443.51572 1327.52533 -0.097683 -4.3324E-05 0.52357 0.00023221 0.42588 0.00018889 443.5158125037817 23.695 0.3873 23.695 23.548 23.936 0 44 19 4 0 0 0 0.74157 1 12171 12171 0.50596 0.41111 1 1085300 + 39825 21078 26610 27126 46667 46667 -0.1253300395419501 MFTDFLSFM 9 Unmodified _MFTDFLSFM_ 0 0 0 ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENST00000460773.5_1_X:138814597-138879340:-|nuORF ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MSMS AL20221201_MKP_PDAC_01 4 379.8751525878906 3 380.169773 1137.48749 NaN NaN NaN NaN NaN NaN NaN 15.277 1 12.75 12.25 13.25 -2.5273 0 0 0 0.84564 1 7823 7823 1.0715 0.44464 1 39826 2003 26611 27127 46668 46668 -0.07575470149004104 MFTLVQFLF 9 Unmodified _MFTLVQFLF_ 0 0 0 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 REV__nc|ENSG00000180638|Q86VL8-5|SLC47A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5394592285156 3 382.540306 1144.59909 NaN NaN NaN NaN NaN NaN NaN 45.492 1 45.464 44.964 45.964 -0.028011 0 0 0 0.81961 1 24442 24442 5.2969 2.7984 1 + 39827 23160 26612 27128 46669 46669 0.03257332270436564 MFTSVAYGNF 10 Unmodified _MFTSVAYGNF_ 0 0 0 ENST00000498205.5_1_3:156260994-156266845:-|nuORF ENST00000498205.5_1_3:156260994-156266845:-|nuORF ENST00000498205.5_1_3:156260994-156266845:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.5083923339844 3 379.507554 1135.50083 NaN NaN NaN NaN NaN NaN NaN 15.989 1 13.432 12.932 13.932 -2.557 0 0 0 0.96981 1 8251 8251 1.9064 0.1641 1 39828 14416 26613 27129 46670 46670 -0.06149896045417336 MFTYGCTWE 9 Unmodified _MFTYGCTWE_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1521606445312 3 379.817511 1136.4307 0.0049658 1.8861E-06 0.32724 0.00012429 0.33221 0.00012618 380.1519164428474 62.548 0.10442 62.548 62.506 62.611 0 7 4 2 0 0 0 0.61381 1 34919 34919 0.23584 0 1 472100 39829 5248 26614 27130 46671 46671 -0.13205517705500824 MFVTAPMLF 9 Unmodified _MFVTAPMLF_ 0 0 0 REV__ENSG00000109133|ENST00000504986|TMEM33 REV__ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7667236328125 2 528.766474 1055.5184 0.82267 0.000435 -1.3889 -0.0007344 -0.56622 -0.0002994 528.7658717538525 102.06 0.18977 95.889 95.814 96.003 -6.1757 15 8 3 0 0 0 0.045537 1 68509 68509 46.921 2.5139 1 11991000 + 39830 18648 26615 27131 46672 46672 -0.007142720441152051 MFWLFMITWA 10 Unmodified _MFWLFMITWA_ 0 0 0 ENST00000392455.7_2_3:191109610-191109739:+|nuORF ENST00000392455.7_2_3:191109610-191109739:+|nuORF ENST00000392455.7_2_3:191109610-191109739:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.3273315429688 2 673.32723 1344.63991 NaN NaN NaN NaN NaN NaN NaN 80.426 1 80.426 79.926 80.926 0 0 0 0 1.0061 1 44658 44658 0 0 1 39831 12673 26616 27132 46673 46673 -0.018626496815841165 MGCQVYEAY 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))GC(Carbamidomethyl (C))QVYEAY_ MGC(1)QVYEAY M(1)GCQVYEAY MGC(42)QVYEAY M(42)GCQVYEAY 0 1 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7228393554688 2 568.722992 1135.43143 0.94136 0.00053537 -0.62366 -0.00035469 0.3177 0.00018068 568.7227027985855 42.355 0.54427 37.671 37.39 37.934 -4.6846 96 35 4 0 0 0 0.06187 1 25432 25432 42.095 27.256 1 105350000 39832 9914 26617 27133 46674 46674 904 1597 -0.13086723056471783 MGEQEGKMCEQ 11 Unmodified _MGEQEGKMCEQ_ 0 0 0 ENST00000567652.1_3_15:28798864-28806522:+|nuORF;nc|ENSG00000227717|P0DX01|GOLGA6L25;nc|ENSG00000237850|P0DX00|GOLGA6L24 ENST00000567652.1_3_15:28798864-28806522:+|nuORF ENST00000567652.1_3_15:28798864-28806522:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8351745605469 3 423.835124 1268.48354 0.26764 0.00011344 -1.1742 -0.00049768 -0.90658 -0.00038424 423.8348263367688 25.949 0.4258 22.998 22.804 23.23 -2.9511 93 27 4 0 0 0 0.73237 1 14266 14266 1.2148 0.51716 1 84084000 39833 15443 26618 27134 46675 46675 -0.13995927705036593 MGFPVKVPY 9 Oxidation (M) _M(Oxidation (M))GFPVKVPY_ M(1)GFPVKVPY M(44)GFPVKVPY 0 0 1 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2764892578125 2 527.275521 1052.53649 0.61673 0.00032519 -0.43906 -0.0002315 0.17767 9.3682E-05 527.2753500151662 58.503 0.3711 58.442 58.175 58.546 -0.060719 33 18 2 0 0 0 0.052168 2 31778 31778;31880 44.407 30.899 1 5208000 39834 10851 26619 27135 46676;46677 46676 1730 0.012321862022645291 MGGGPGGRRCD 11 Unmodified _MGGGPGGRRCD_ 0 0 0 REV__ENSG00000196544|ENST00000389017|BORCS6 REV__ENSG00000196544|ENST00000389017|BORCS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7330932617188 2 531.732017 1061.44948 1.1443 0.00060846 1.1067 0.00058845 2.251 0.0011969 531.7323766131545 53.608 0.58267 47.803 47.544 48.127 -5.8042 102 33 4 0 0 0 0.68427 1 33855 33855 5.7319 0.50118 1 166370000 + 39835 23842 26620 27136 46678 46678 -0.0787854329109905 MGGGPGGRRCD 11 Unmodified _MGGGPGGRRCD_ 0 0 0 REV__ENSG00000196544|ENST00000389017|BORCS6 REV__ENSG00000196544|ENST00000389017|BORCS6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 531.732017 1061.44948 1.1443 0.00060846 1.1067 0.00058845 2.251 0.0011969 531.7323766131545 53.608 0.58267 47.803 47.544 48.127 -5.8042 0.13498 0.00034624 NaN 5.7319 102 33 4 NaN NaN NaN NaN 0 NaN NaN 0 166370000 + 39836 23842 26620 27136 -0.0787854329109905 MGGKKKAL 8 Unmodified _MGGKKKAL_ 0 0 0 ENST00000418088.5_2_1:3663090-3663306:-|nuORF ENST00000418088.5_2_1:3663090-3663306:-|nuORF ENST00000418088.5_2_1:3663090-3663306:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.7583923339844 2 416.757298 831.500044 1.3748 0.00057295 2.1474 0.00089496 3.5222 0.0014679 416.75779781712316 35.779 0.35779 31.586 31.351 31.709 -4.1928 38 22 2 0 0 0 0.80676 1 20767 20767 2.5775 0 1 6336400 39837 13062 26621 27137 46679 46679 0.07755354096195788 MGGPTLRL 8 Unmodified _MGGPTLRL_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7388000488281 2 422.739105 843.463658 0.57001 0.00024097 -0.092939 -3.9289E-05 0.47707 0.00020168 422.73876668393217 52.271 0.26215 52.212 52.047 52.309 -0.058918 22 12 2 0 0 0 0.57045 1 28327 28327 28.487 0 1 1789700 + 39838 22217 26622 27138 46680 46680 0.03566477199490237 MGLHLRLSL 9 Unmodified _MGLHLRLSL_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1039.216674804688 1 1039.6081 1038.60082 -0.42219 -0.00043891 -1.5816 -0.0016443 -2.0038 -0.0020832 1039.6052326550919 96.562 0.20716 96.562 96.489 96.696 0 15 12 2 0 0 0 0.58466 1 53354 53354 2.3027 0 1 452490 + 39839 20701 26623 27139 46681 46681 0.08306386079061667 MGLHLRLSL 9 Unmodified _MGLHLRLSL_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1039.6081 1038.60082 -0.42219 -0.00043891 -1.5816 -0.0016443 -2.0038 -0.0020832 1039.6052326550919 96.562 0.20716 96.562 96.489 96.696 0 0 0 NaN 2.3027 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 452490 + 39840 20701 26623 27139 0.08306386079061667 MGLHRNLY 8 Unmodified _MGLHRNLY_ 0 0 0 REV__ENSG00000143512|ENST00000343410|HHIPL2 REV__ENSG00000143512|ENST00000343410|HHIPL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2627258300781 2 502.260736 1002.50692 NaN NaN NaN NaN NaN NaN NaN 31.646 1 31.646 31.146 32.146 0 0 0 0 0.97348 1 16492 16492 5.7604 1.4312 1 + 39841 20646 26624 27140 46682 46682 0.0057666697678087075 MGPRGQGK 8 Unmodified _MGPRGQGK_ 0 0 0 REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF REV__ENST00000533927.5_1_1:249144411-249149911:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.7191772460938 2 415.718704 829.422856 1.3018 0.00054119 -0.046773 -1.9444E-05 1.255 0.00052174 415.7184478167783 19.642 0.23208 16.986 16.873 17.105 -2.6564 21 16 2 0 0 0 0.74163 1 10431 10431 13.508 8.7519 1 3322900 + 39842 28490 26625 27141 46683 46683 0.0013213587988047948 MGQGRVAHMI 10 Unmodified _MGQGRVAHMI_ 0 0 0 ENST00000521347.1_1_7:143054447-143056506:-|nuORF;nc|ENSG00000159784|Q86XD5|FAM131B;ENST00000410085.5_1_7:143053645-143056840:-|nuORF;nc|ENSG00000159784|Q86XD5-2|FAM131B;ENSG00000159784|ENST00000443739|FAM131B ENST00000521347.1_1_7:143054447-143056506:-|nuORF ENST00000521347.1_1_7:143054447-143056506:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8540649414062 3 367.188161 1098.54265 0.041992 1.5419E-05 0.13564 4.9804E-05 0.17763 6.5223E-05 367.1879726181516 38.372 0.23013 38.389 38.314 38.544 0.01704 14 10 2 0 0 0 0.22993 1 20407 20407 7.1017 4.8189 1 1203300 39843 6674 26626 27142 46684 46684 -0.002676188378700317 MGQGRVAHMI 10 Unmodified _MGQGRVAHMI_ 0 0 0 ENST00000521347.1_1_7:143054447-143056506:-|nuORF;nc|ENSG00000159784|Q86XD5|FAM131B;ENST00000410085.5_1_7:143053645-143056840:-|nuORF;nc|ENSG00000159784|Q86XD5-2|FAM131B;ENSG00000159784|ENST00000443739|FAM131B ENST00000521347.1_1_7:143054447-143056506:-|nuORF ENST00000521347.1_1_7:143054447-143056506:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 367.188161 1098.54265 1.588 0.00058311 2.9207 0.0010725 4.5087 0.0016556 367.1889503987746 42.832 0.046619 38.148 38.107 38.153 -4.6846 -0.12063 0.002265 NaN 7.1017 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 3093300 39844 6674 26626 27142 -0.002676188378700317 MGRSKREIPF 10 Unmodified _MGRSKREIPF_ 0 0 0 REV__ENST00000532085.1_1_11:118900912-118901290:-|nuORF REV__ENST00000532085.1_1_11:118900912-118901290:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.556396484375 3 407.55713 1219.64956 1.1417 0.0004653 -0.3822 -0.00015577 0.75947 0.00030953 407.5569163203794 41.948 0.59633 37.264 37.067 37.663 -4.6846 103 37 4 0 0 0 0.57893 1 25466 25466 7.4771 1.2852 1 51761000 + 39845 28454 26627 27143 46685 46685 0.048522546481535755 MGSITCIAWKG 11 Unmodified _MGSITCIAWKG_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000478567.5_1_10:122645388-122659588:+|nuORF;ENST00000604509.5_1_10:122640390-122648742:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5282897949219 3 389.528072 1165.56239 -0.63766 -0.00024839 0.67857 0.00026432 0.040911 1.5936E-05 389.52841528838286 16.169 0.14524 16.169 16.057 16.202 0 54 32 2 0 0 0 0.7326 1 7811 7811 0.40827 0 1 1056800 39846 3488 26628 27144 46686 46686 -0.013772876177881699 MGSPSIFVY 9 Oxidation (M) _M(Oxidation (M))GSPSIFVY_ M(1)GSPSIFVY M(44)GSPSIFVY 0 0 1 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-2|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7411804199219 2 508.741511 1015.46847 0.23129 0.00011767 0.48162 0.00024502 0.71291 0.00036269 508.74156848102484 68.358 0.28382 67.877 67.683 67.967 -0.48071 21 12 3 0 0 0 0.052168 1 37322 37322 44.407 23.536 1 1081200 39847 5353 26629 27145 46687 46687 986 -0.038646834483984094 MGSYECQCHS 10 Unmodified _MGSYECQCHS_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.6956787109375 2 572.696451 1143.37835 NaN NaN NaN NaN NaN NaN NaN 2.3358 1 2.3187 1.8187 2.8187 -0.017019 0 0 0 1.0024 1 1192 1192 0.40072 0.40072 1 39848 6644 26630 27146 46688 46688 -0.18760424110791973 MGTYILTPV 9 Unmodified _MGTYILTPV_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF;REV__nc|ENSG00000111731|Q86YS7-2|C2CD5 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.8195190429688 2 497.767529 993.520504 0.46989 0.0002339 -0.22383 -0.00011142 0.24606 0.00012248 497.76828756198177 99.708 0.1401 93.533 93.46 93.6 -6.1757 11 8 2 0 0 0 0.16785 1 66518 66518 23.148 0 1 29651000 + 39849 28597;29573 26631 27147 46689 46689 0.023484799653488153 MGVGHYTAY 9 Unmodified _MGVGHYTAY_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.724853515625 2 499.723652 997.432752 1.0144 0.00050691 0.11349 5.6711E-05 1.1279 0.00056363 499.7235493670887 39.222 0.23682 34.771 34.659 34.896 -4.4509 25 14 2 0 0 0 0.03327 1 23271 23271 53.576 23.351 1 12213000 39850 3029 26632 27148 46690 46690 -0.06606720905415386 MGVGNKAF 8 Unmodified _MGVGNKAF_ 0 0 0 ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4;ENST00000562289.1_1_16:67321760-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF ENST00000563969.5_1_16:67314567-67322708:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.209716796875 2 412.210181 822.405809 NaN NaN NaN NaN NaN NaN NaN 52.659 1 46.924 46.424 47.424 -5.7345 0 0 0 0.97444 1 33242 33242 2.8892 0 1 39851 9771 26633 27149 46691 46691 -0.012497847259510309 MGVLIVMIMI 10 Unmodified _MGVLIVMIMI_ 0 0 0 REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF REV__ENST00000456360.5_1_Y:23556925-23559248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2189636230469 3 373.882798 1118.62657 0.27992 0.00010466 1.744 0.00065204 2.0239 0.0007567 374.21855361081333 60.3 0.22346 60.256 60.127 60.351 -0.043507 30 11 4 0 0 0 0.65502 1 32856 32856 4.1895 0 1 12148000 + 39852 27252 26634 27150 46692 46692 0.07199776214815756 MGYDDFTF 8 Unmodified _MGYDDFTF_ 0 0 0 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7400817871094 2 498.194393 994.374234 NaN NaN NaN NaN NaN NaN NaN 71.287 1 71.287 70.787 71.787 0 0 0 0 0.97444 1 39709 39709 2.8892 2.0956 1 + 39853 29935 26635 27151 46693 46693 -0.12317822270540546 MHCGDDEDCF 10 Unmodified _MHCGDDEDCF_ 0 0 0 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.1784057617188 2 586.178091 1170.34163 -0.48719 -0.00028558 0.43268 0.00025362 -0.054516 -3.1956E-05 586.1788073645392 28.858 0.46038 28.858 28.641 29.102 0 94 22 6 0 0 0 0.71123 2 14948 14850;14948 1.6526 1.3836 1 8854900 39854 8668 26636 27152 46694;46695 46695 -0.23672720727381602 MHCGDDEDCF 10 Unmodified _MHCGDDEDCF_ 0 0 0 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.17919921875 2 586.178091 1170.34163 1.2253 0.00071823 0.39149 0.00022948 1.6168 0.00094772 586.1783890882017 34.019 0.50226 30.034 29.785 30.287 -3.9853 65 27 3 0 0 0 0.72247 2 19525 19525;19650 0.40072 0.40072 1 17387000 39855 8668 26636 27152 46696;46697 46696 -0.23672720727381602 MHETLHHKL 9 Unmodified _MHETLHHKL_ 0 0 0 REV__ENSG00000213588|ENST00000395064|ZBTB9 REV__ENSG00000213588|ENST00000395064|ZBTB9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.53515625 3 382.534326 1144.58115 0.69826 0.00026711 0.063741 2.4383E-05 0.762 0.00029149 382.53443791304977 24.346 0.35016 21.519 21.374 21.724 -2.8273 48 19 3 0 0 0 0.54444 1 13305 13305 2.7352 0 1 12841000 + 39856 24287 26637 27153 46698 46698 0.014640100682981938 MHGFFMDI 8 Unmodified _MHGFFMDI_ 0 0 0 nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2152709960938 2 499.217149 996.419744 NaN NaN NaN NaN NaN NaN NaN 66.956 1 66.956 66.456 67.456 0 0 0 0 0.97444 1 37343 37343 2.8892 0 1 39857 3161 26638 27154 46699 46699 -0.07860875289156866 MHHYINEVLF 10 Unmodified _MHHYINEVLF_ 0 0 0 nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|1|0.33|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16 nc|ENSG00000041515|Q9Y6X6-4|MYO16 nc|ENSG00000041515|Q9Y6X6-4|MYO16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.883056640625 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 39.181 1 39.193 38.693 39.693 0.011452 0 0 0 1.0019 1 20861 20861 0.15932 0 1 39858 655 26639 27155 46700 46700 -0.01606853963062349 MHKRSPLLR 9 Unmodified _MHKRSPLLR_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.85595703125 3 379.893965 1136.66007 1.333 0.00050639 -0.12916 -4.9066E-05 1.2038 0.00045733 379.8938044060205 50.08 0.28221 50.031 49.865 50.148 -0.048828 28 13 3 0 0 0 0.21835 1 27032 27032 2.2828 1.7768 1 3408100 39859 3348 26640 27156 46701 46701 0.09720282093257993 MHLDKLIGY 9 Unmodified _MHLDKLIGY_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8641967773438 3 363.86356 1088.56885 1.7842 0.00064921 -0.16761 -6.0989E-05 1.6166 0.00058822 363.86353878199395 50.303 0.35005 44.764 44.594 44.944 -5.5391 59 22 4 0 0 0 0.16226 1 31489 31489 24.991 3.4008 1 33881000 39860 2960 26641 27157 46702 46702 0.0281097360525564 MHLHGHNWI 9 Unmodified _MHLHGHNWI_ 0 0 0 REV__nc|ENSG00000117322|P20023-2|CR2 REV__nc|ENSG00000117322|P20023-2|CR2 MSMS AL20221201_MKP_PDAC_01 4 382.4586791992188 3 382.187149 1143.53962 NaN NaN NaN NaN NaN NaN NaN 16.263 1 13.706 13.206 14.206 -2.557 0 0 0 0.85359 1 8412 8412 1.0715 0 1 + 39861 29593 26642 27158 46703 46703 -0.026411259003680243 MHLPAPAD 8 Unmodified _MHLPAPAD_ 0 0 0 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 ENSG00000215475|ENST00000400405|SIAH3 MSMS AL20221201_MKP_PDAC_01 4 426.2059326171875 2 426.207638 850.400723 NaN NaN NaN NaN NaN NaN NaN 46.787 1 41.706 41.206 42.206 -5.0805 0 0 0 0.94749 1 28964 28964 11.114 0 1 39862 10532 26643 27159 46704 46704 -0.030460885885531752 MHLVVESF 8 Unmodified _MHLVVESF_ 0 0 0 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 ENSG00000165118|ENST00000376344|C9orf64 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.243408203125 2 481.244221 960.473888 NaN NaN NaN NaN NaN NaN NaN 68.752 1 68.752 68.252 69.252 0 0 0 0 0.97444 1 38318 38318 2.8892 0 1 39863 7295 26644 27160 46705 46705 -0.007929598659302428 MHPLTPLI 8 Unmodified _MHPLTPLI_ 0 0 0 ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000152284|ENST00000282111|TCF7L1 ENSG00000152284|ENST00000282111|TCF7L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2655944824219 2 461.264956 920.515359 1.7622 0.00081283 0.018148 8.371E-06 1.7803 0.00082121 461.264841164483 82.051 0.41484 82.113 81.932 82.347 0.062004 39 16 3 0 0 0 0.80624 1 45350 45350 2.8892 0.58649 1 21946000 39864 6177 26645 27161 46706 46706 0.0519222089340019 MHRMLKYRSVF 11 Unmodified _MHRMLKYRSVF_ 0 0 0 REV__ENSG00000118495|ENST00000674357|PLAGL1 REV__ENSG00000118495|ENST00000674357|PLAGL1 MSMS AL20221201_MKP_PDAC_01 4 489.5717468261719 3 489.92857 1466.76388 NaN NaN NaN NaN NaN NaN NaN 98.516 1 92.34 91.84 92.84 -6.1757 0 0 0 0.93923 1 65353 65353 3.0723 0 1 + 39865 19153 26646 27162 46707 46707 0.04916821138567684 MHRRRYYDRWK 11 Unmodified _MHRRRYYDRWK_ 0 0 0 REV__nc|ENSG00000066933|B2RTY4-5|MYO9A REV__nc|ENSG00000066933|B2RTY4-5|MYO9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 833.9314575195312 2 833.928417 1665.84228 NaN NaN NaN NaN NaN NaN NaN 80.872 1 80.93 80.43 81.43 0.057587 0 0 0 0.9435 1 44715 44715 0 0 1 + 39866 17411 26647 27163 46708 46708 0.03599389768032779 MHRYQLDLT 9 Unmodified _MHRYQLDLT_ 0 0 0 REV__ENST00000317623.8_2_14:60582660-60585060:+|nuORF REV__ENST00000317623.8_2_14:60582660-60585060:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8660583496094 3 392.865852 1175.57573 -0.34855 -0.00013693 0.10507 4.1279E-05 -0.24347 -9.5652E-05 392.86605698402013 23.326 0.18435 23.326 23.243 23.427 0 17 8 3 0 0 0 0.59532 1 11884 11884 0.86438 0 1 775450 + 39867 25479 26648 27164 46709 46709 -0.005037135141719773 MHSLVMRND 9 Unmodified _MHSLVMRND_ 0 0 0 nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7 nc|ENSG00000123178|Q5W111-2|SPRYD7 nc|ENSG00000123178|Q5W111-2|SPRYD7 MSMS AL20221201_MKP_PDAC_01 4 368.2131958007812 3 368.175921 1101.50593 NaN NaN NaN NaN NaN NaN NaN 46.826 1 41.746 41.246 42.246 -5.0805 0 0 0 0.20976 1 28992 28992 29.841 2.6173 1 39868 3687 26649 27165 46710 46710 -0.04075915454427559 MHSPAQSL 8 Unmodified _MHSPAQSL_ 0 0 0 REV__nc|ENSG00000078403|P55197-1|MLLT10 REV__nc|ENSG00000078403|P55197-1|MLLT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7110290527344 2 435.710545 869.406537 0.19131 8.3355E-05 1.6736 0.00072921 1.8649 0.00081257 435.7110148036816 62.867 0.33027 62.867 62.633 62.963 0 23 13 2 0 0 0 0.80232 1 35035 35035 5.2307 0 1 1394200 + 39869 17627 26650 27166 46711 46711 -0.03338990076883874 MHSTPKSG 8 Unmodified _MHSTPKSG_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.3601684570312 1 844.398164 843.390887 1.2359 0.0010436 1.0006 0.00084493 2.2365 0.0018885 844.3991518529007 66.171 0.26019 66.18 66.101 66.361 0.0095673 16 12 2 0 0 0 0.74163 1 36280 36280 13.508 4.1604 1 2650400 + 39870 24480 26651 27167 46712 46712 -0.0370727659392287 MHTQIAAQGF 10 Unmodified _MHTQIAAQGF_ 0 0 0 ENSG00000175202|ENST00000311755|HIGD2B ENSG00000175202|ENST00000311755|HIGD2B ENSG00000175202|ENST00000311755|HIGD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2643432617188 2 552.268758 1102.52296 0.16211 8.9529E-05 -1.0622 -0.00058659 -0.90004 -0.00049707 552.2680187387924 76.445 0.64963 75.966 75.787 76.437 -0.47945 84 36 3 0 0 0 0.66569 1 42063 42063 6.7232 0 1 38621000 39871 8494 26652 27168 46713 46713 -0.024196715769903676 MHVEQKDI 8 Unmodified _MHVEQKDI_ 0 0 0 ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B ENSG00000197147|ENST00000330947|LRRC8B MSMS AL20221201_MKP_PDAC_01 4 499.8361511230469 2 500.250034 998.485516 NaN NaN NaN NaN NaN NaN NaN 106.32 1 100.14 99.641 100.64 -6.1757 0 0 0 0.97444 1 71171 71171 0.79363 0 1 39872 9915 26653 27169 46714 46714 -0.013787628426030096 MHYIKCDNF 9 Unmodified _MHYIKCDNF_ 0 0 0 ENST00000393085.3_1_7:135613384-135613519:-|nuORF ENST00000393085.3_1_7:135613384-135613519:-|nuORF ENST00000393085.3_1_7:135613384-135613519:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2607421875 2 585.757169 1169.49979 0.11025 6.4579E-05 0.32552 0.00019068 0.43577 0.00025526 586.2597126186844 61.54 0.10062 61.54 61.497 61.597 0 6 4 2 0 0 0 0.58466 1 34332 34332 2.3027 0 1 837920 39873 12692 26654 27170 46715 46715 -0.07818433685974924 MIALLLNQ 8 Unmodified _MIALLLNQ_ 0 0 0 REV__ENST00000491515.5_1_1:40432335-40433413:+|nuORF REV__ENST00000491515.5_1_1:40432335-40433413:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.5388793945312 1 915.5332 914.525924 0.84013 0.00076917 -0.54334 -0.00049744 0.2968 0.00027173 915.532482772931 102.61 0.062187 96.438 96.397 96.459 -6.1757 22 13 2 0 0 0 0.5284 1 68844 68844 32.117 1.8922 1 6084900 + 39874 22307 26655 27171 46716 46716 0.06524203547826346 MICCLVVVLIF 11 Unmodified _MICCLVVVLIF_ 0 0 0 REV__nc|ENSG00000164300|Q86VE9-3|SERINC5 REV__nc|ENSG00000164300|Q86VE9-3|SERINC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.3426513671875 2 626.846941 1251.67933 0.38468 0.00024114 -0.59246 -0.00037138 -0.20778 -0.00013025 627.3482979821441 74.994 0.83427 75.04 74.411 75.245 0.045967 47 28 2 0 0 0 0.61011 1 41228 41228 10.824 2.0785 1 17962000 + 39875 21900 26656 27172 46717 46717 0.06355734277622105 MIDRHSKAMDV 11 Unmodified _MIDRHSKAMDV_ 0 0 0 REV__ENSG00000152785|ENST00000282701|BMP3 REV__ENSG00000152785|ENST00000282701|BMP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824157714844 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 87.655 1 87.655 87.155 88.155 0 0 0 0 0.94184 1 48533 48533 0.40827 0.26837 1 + 39876 21137 26657 27173 46718 46718 -0.016720166743880327 MIDRHSKAMDV 11 Unmodified _MIDRHSKAMDV_ 0 0 0 REV__ENSG00000152785|ENST00000282701|BMP3 REV__ENSG00000152785|ENST00000282701|BMP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8817749023438 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 102.49 1 102.49 101.99 102.99 0 0 0 0 0.94184 1 56517 56517 0.40827 0 1 + 39877 21137 26657 27173 46719 46719 -0.016720166743880327 MIEAAERETF 10 Unmodified _MIEAAERETF_ 0 0 0 REV__ENSG00000114738|ENST00000621469|MAPKAPK3 REV__ENSG00000114738|ENST00000621469|MAPKAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7835083007812 2 598.784438 1195.55432 0.55674 0.00033337 -2.2984 -0.0013763 -1.7417 -0.0010429 598.7830524959209 84.127 0.35712 83.627 83.507 83.864 -0.49961 24 15 2 0 0 0 0.69064 2 46015 46015;46117 3.9444 0 1 511190 + 39878 18929 26658 27174 46720;46721 46720 -0.03563143333553853 MIEEEYPL 8 Unmodified _MIEEEYPL_ 0 0 0 REV__ENSG00000076924|ENST00000358368|XAB2 REV__ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2399291992188 2 512.238801 1022.46305 1.6412 0.00084068 1.669 0.00085494 3.3102 0.0016956 512.2396868965882 82.306 0.33582 82.368 82.22 82.556 0.061996 21 12 2 0 0 0 0.76859 1 45549 45549 11.114 0.29054 1 5148700 + 39879 17597 26659 27175 46722 46722 -0.04728407030870585 MIEYLSSYV 9 Unmodified _MIEYLSSYV_ 0 0 0 REV__ENST00000267859.7_1_15:59955189-59955258:-|nuORF REV__ENST00000267859.7_1_15:59955189-59955258:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.847900390625 3 368.847576 1103.5209 -0.014961 -5.5183E-06 0.74691 0.00027549 0.73195 0.00026998 368.84791113638687 42.097 0.70694 42.088 41.915 42.622 -0.0088196 98 32 5 0 0 0 0.30562 1 22568 22568 11.495 0 1 1194400000 + 39880 25113 26660 27176 46723 46723 -0.026721451054299905 MIEYLSSYV 9 Unmodified _MIEYLSSYV_ 0 0 0 REV__ENST00000267859.7_1_15:59955189-59955258:-|nuORF REV__ENST00000267859.7_1_15:59955189-59955258:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1827087402344 3 368.847576 1103.5209 1.1264 0.00041547 -0.43599 -0.00016081 0.6904 0.00025465 368.8475289745727 46.663 4.5088 41.583 41.23 45.739 -5.0805 1495 352 6 0 0 0 0.2143 6 31715 29044;29568;30608;30871;31425;31715 20.415 12.806 1 23053000000 + 39881 25113 26660 27176 46724;46725;46726;46727;46728;46729 46729 -0.026721451054299905 MIFSRAEE 8 Unmodified _MIFSRAEE_ 0 0 0 REV__ENSG00000160007|ENST00000672722|ARHGAP35 REV__ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7372436523438 2 491.73676 981.458967 0.5261 0.0002587 -1.4089 -0.00069281 -0.88281 -0.00043411 491.7359137330715 78.962 0.99966 78.476 78.012 79.012 -0.48596 102 41 3 0 0 0 0.77186 1 43403 43403 10.824 0 1 1918100 + 39882 21509 26661 27177 46730 46730 -0.03250451733936188 MIGFFHALL 9 Unmodified _MIGFFHALL_ 0 0 0 nc|ENSG00000251608|P0DN82|OR12D1 nc|ENSG00000251608|P0DN82|OR12D1 nc|ENSG00000251608|P0DN82|OR12D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.789306640625 2 524.786056 1047.55756 1.2735 0.00066829 2.5904 0.0013594 3.8638 0.0020277 524.7872422267216 37.606 0.66103 33.237 32.87 33.531 -4.3689 66 36 2 0 0 0 0.25681 1 22212 22212 20.871 20.871 1 24945000 39883 16580 26662 27178 46731 46731 0.035681963017623275 MIGMPLLFGF 10 Unmodified _MIGMPLLFGF_ 0 0 0 REV__ENSG00000135898|ENST00000650999|GPR55 REV__ENSG00000135898|ENST00000650999|GPR55 MSMS AL20221201_MKP_PDAC_01 4 563.2950439453125 2 563.295399 1124.57624 NaN NaN NaN NaN NaN NaN NaN 87.78 1 81.605 81.105 82.105 -6.1757 0 0 0 0.79473 1 57895 57895 12.532 0.29089 1 + 39884 20105 26663 27179 46732 46732 0.01893989881318703 MIGTHLMIY 9 Unmodified _MIGTHLMIY_ 0 0 0 REV__nc|ENSG00000115252|P54750-3|PDE1A REV__nc|ENSG00000115252|P54750-3|PDE1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7738647460938 2 539.774831 1077.53511 -0.29391 -0.00015865 -0.24574 -0.00013264 -0.53965 -0.00029129 539.7745935003226 31.93 0.70798 31.93 31.418 32.126 0 43 34 2 0 0 0 0.49272 1 16502 16502 7.9102 0 1 1486000 + 39885 18963 26664 27180 46733 46733 -0.0005577115814503486 MIGWIYLGL 9 Unmodified _MIGWIYLGL_ 0 0 0 nc|ENSG00000215127|Q58G82|SYT14P1 nc|ENSG00000215127|Q58G82|SYT14P1 nc|ENSG00000215127|Q58G82|SYT14P1 MSMS AL20221201_MKP_PDAC_01 4 355.8662109375 3 355.864901 1064.57287 NaN NaN NaN NaN NaN NaN NaN 43.371 1 38.606 38.106 39.106 -4.7648 0 0 0 0.38239 1 26337 26337 19.257 2.1441 1 39886 16546 26665 27181 46734 46734 0.04317063098960716 MIHQVYSPY 9 Unmodified _MIHQVYSPY_ 0 0 0 REV__ENSG00000159650|ENST00000290868|UROC1 REV__ENSG00000159650|ENST00000290868|UROC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8525695800781 3 379.851432 1136.53247 1.1549 0.00043869 0.84563 0.00032121 2.0005 0.0007599 380.1858645012218 43.115 0.28333 38.35 38.21 38.493 -4.7648 38 18 3 0 0 0 0.37804 1 26097 26097 8.7454 1.7083 1 12820000 + 39887 21493 26666 27182 46735 46735 -0.03033903291475326 MIHQVYSPY 9 Unmodified _MIHQVYSPY_ 0 0 0 REV__ENSG00000159650|ENST00000290868|UROC1 REV__ENSG00000159650|ENST00000290868|UROC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8825378417969 3 379.851432 1136.53247 1.1549 0.00043869 0.84563 0.00032121 2.0005 0.0007599 380.1858645012218 43.115 0.28333 38.35 38.21 38.493 -4.7648 38 18 3 0 0 0 0.20528 1 26051 26051 5.2969 0 1 12820000 + 39888 21493 26666 27182 46736 46736 -0.03033903291475326 MIHSGDPVNY 10 Unmodified _MIHSGDPVNY_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3 ENSG00000149273|ENST00000531188|RPS3 ENSG00000149273|ENST00000531188|RPS3 MSMS AL20221201_MKP_PDAC_01 4 566.7573852539062 2 566.758223 1131.50189 NaN NaN NaN NaN NaN NaN NaN 36.918 1 32.635 32.135 33.135 -4.2835 0 0 0 0.168 1 21608 21608 45.7 22.551 1 39889 5998 26667 27183 46737 46737 -0.0585968167649753 MIIEDETEF 9 Unmodified _MIIEDETEF_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.30078125 2 563.752272 1125.48999 0.27261 0.00015368 0.20807 0.0001173 0.48068 0.00027098 563.7522204329241 61.674 0.22709 61.674 61.548 61.775 0 16 9 2 0 0 0 0.21242 1 34389 34389 5.2307 0.90143 1 1160100 39890 4910 26668 27184 46738 46738 -0.06773343210352323 MIIIFIYYQFP 11 Unmodified _MIIIFIYYQFP_ 0 0 0 REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.260986328125 3 483.26132 1446.76213 0.9593 0.00046359 -0.14893 -7.1974E-05 0.81037 0.00039162 483.59573549580267 47.298 0.24757 47.259 47.138 47.385 -0.038643 18 11 2 0 0 0 0.69509 1 25470 25470 4.7159 0.59929 1 2116300 + 39891 25295 26669 27185 46739 46739 0.05662090601595082 MIIIFIYYQFP 11 Unmodified _MIIIFIYYQFP_ 0 0 0 REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF REV__ENST00000299612.11_1_17:19286554-19286854:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 483.26132 1446.76213 0.74741 0.00036119 -0.42507 -0.00020542 0.32234 0.00015577 483.5956777528432 47.56 0.13907 47.207 47.105 47.244 -0.3526 -0.025714 -0.00022537 NaN 4.7159 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1211600 + 39892 25295 26669 27185 0.05662090601595082 MIINLTVTL 9 Unmodified _MIINLTVTL_ 0 0 0 REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF REV__ENST00000456901.1_1_7:145280818-145281352:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.307373046875 2 509.304278 1016.594 3.8903 0.0019813 2.7878 0.0014198 6.6781 0.0034012 509.30610902770434 98.223 0.34138 98.205 98.072 98.414 -0.018188 26 12 3 0 0 0 0.06187 1 54565 54565 42.095 6.0504 1 1326000 + 39893 27260 26670 27186 46740 46740 0.08637028407838443 MIIVHFSL 8 Unmodified _MIIVHFSL_ 0 0 0 AluJr_dup39110|chr8:143020241-143020533:-|1.3478142496313728|0.0573479168884429|4.55|179.0|13|1|anti-sense AluJr_dup39110|chr8:143020241-143020533:-|1.3478142496313728|0.0573479168884429|4.55|179.0|13|1|anti-sense AluJr_dup39110|chr8:143020241-143020533:-|1.3478142496313728|0.0573479168884429|4.55|179.0|13|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7746276855469 2 480.272781 958.531009 1.5303 0.00073498 0.18618 8.9415E-05 1.7165 0.00082439 480.27284053055763 79.413 0.76647 73.237 72.911 73.677 -6.1757 109 44 3 0 0 0 0.71616 1 52265 52265 15.768 0 1 65473000 39894 19 26671 27187 46741 46741 0.05008507410445873 MIKALELDP 9 Unmodified _MIKALELDP_ 0 0 0 nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000133392|P35749-4|MYH11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1029.7255859375 1 1029.56489 1028.55762 -1.0639 -0.0010953 -4.3946 -0.0045245 -5.4585 -0.0056199 1029.5591355533256 56.274 0.095322 55.788 55.748 55.843 -0.48554 6 4 2 0 0 0 0.21367 1 30579 30579 4.756 2.1785 1 1751400 39895 4510 26672 27188 46742 46742 0.04448151511087417 MIKDTFIL 8 Unmodified _MIKDTFIL_ 0 0 0 ENST00000222567.5_1_7:19739896-19744481:-|nuORF ENST00000222567.5_1_7:19739896-19744481:-|nuORF ENST00000222567.5_1_7:19739896-19744481:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.778564453125 2 490.777896 979.54124 NaN NaN NaN NaN NaN NaN NaN 101.73 1 95.553 95.053 96.053 -6.1757 0 0 0 0.90769 1 68280 68280 18.135 4.6271 1 39896 11038 26673 27189 46743 46743 0.050650703450060064 MIKFQMKK 8 Unmodified _MIKFQMKK_ 0 0 0 ENST00000462503.1_1_8:34180515-34180734:-|nuORF ENST00000462503.1_1_8:34180515-34180734:-|nuORF ENST00000462503.1_1_8:34180515-34180734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2671508789062 2 527.301016 1052.58748 0.4232 0.00022316 0.17076 9.0044E-05 0.59397 0.0003132 527.3011813918101 78.296 0.33086 78.296 78.101 78.432 0 27 14 3 0 0 0 0.80624 1 43426 43426 2.8892 0 1 1090000 39897 13680 26674 27190 46744 46744 0.06328811975458848 MILELDPTF 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ M(1)ILELDPTF M(60)ILELDPTF 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7757568359375 2 547.775551 1093.53655 0.29931 0.00016395 0.044054 2.4132E-05 0.34336 0.00018809 547.7757691230636 82.292 0.35268 82.292 82.057 82.41 0 55 15 4 0 0 0 0.023164 1 45665 45665 60.39 30.165 1 6194400 39898 4346 26675 27191 46745 46745 784 -0.0064785858842242305 MILELDPTF 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ M(1)ILELDPTF M(67)ILELDPTF 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7755126953125 2 547.775551 1093.53655 0.29903 0.0001638 0.7173 0.00039292 1.0163 0.00055672 547.7756646650358 82.562 0.50397 82.562 82.41 82.914 0 52 21 4 0 0 0 0.016184 1 45769 45769 67.344 31.3 1 5529800 39899 4346 26675 27191 46746 46746 784 -0.0064785858842242305 MILELDPTF 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ M(1)ILELDPTF M(51)ILELDPTF 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7761840820312 2 547.775551 1093.53655 0.43754 0.00023967 -0.62189 -0.00034065 -0.18435 -0.00010098 547.7756127712505 83.071 0.53726 82.574 82.425 82.962 -0.49751 46 21 4 0 0 0 0.038285 1 45464 45464 50.855 27.707 1 6502600 39900 4346 26675 27191 46747 46747 784 -0.0064785858842242305 MILELDPTF 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ M(1)ILELDPTF M(44)ILELDPTF 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2772216796875 2 547.775551 1093.53655 0.77236 0.00042308 -0.73377 -0.00040194 0.038592 2.114E-05 547.7751819815536 91.311 0.88058 85.136 84.67 85.55 -6.1757 91 49 2 0 0 0 0.052168 1 60448 60448 44.407 21.259 1 30068000 39901 4346 26675 27191 46748 46748 784 -0.0064785858842242305 MILELDPTF 9 Oxidation (M) _M(Oxidation (M))ILELDPTF_ 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.775551 1093.53655 0.47418 0.00025974 -0.37766 -0.00020687 0.096513 5.2868E-05 547.7754230754116 82.765 0.34772 82.267 82.077 82.425 -0.49751 -0.01227 -0.0002313 NaN 60.39 42 14 4 NaN NaN NaN NaN 0 NaN NaN 0 5745000 39902 4346 26675 27191 784 -0.0064785858842242305 MILELDPTF 9 Unmodified _MILELDPTF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7763061523438 2 539.778093 1077.54163 0.26754 0.00014441 -0.69689 -0.00037616 -0.42934 -0.00023175 539.7776825351253 92.89 0.26824 92.433 92.233 92.501 -0.4574 18 13 2 0 0 0 0.052168 1 50747 50747 44.407 21.259 1 2003100 39903 4346 26675 27192 46749 46749 0.005964452741864079 MILELDPTF 9 Unmodified _MILELDPTF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7775268554688 2 539.778093 1077.54163 0.20233 0.00010921 -0.43864 -0.00023677 -0.23632 -0.00012756 539.7777998902202 99.864 0.17995 93.689 93.6 93.78 -6.1757 18 13 2 0 0 0 0.078417 1 66675 66675 38.151 17.28 1 88768000 39904 4346 26675 27192 46750 46750 0.005964452741864079 MILETLMY 8 Unmodified _MILETLMY_ 0 0 0 ENST00000283195.10_1_2:109365513-109365570:+|nuORF ENST00000283195.10_1_2:109365513-109365570:+|nuORF ENST00000283195.10_1_2:109365513-109365570:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2577819824219 2 507.255939 1012.49733 0.04527 2.2964E-05 -1.3345 -0.00067694 -1.2892 -0.00065397 507.2553270704482 94.905 0.40259 94.537 94.265 94.668 -0.36815 30 19 2 0 0 0 0.80044 1 51751 51751 6.3541 0 1 708570 39905 11424 26676 27193 46751 46751 -0.008422821436283812 MILTKQRMI 9 Unmodified _MILTKQRMI_ 0 0 0 nc|ENSG00000100150|O75140-6|DEPDC5;nc|ENSG00000100150|O75140-8|DEPDC5;nc|ENSG00000100150|O75140-5|DEPDC5;nc|ENSG00000100150|O75140-1|DEPDC5;nc|ENSG00000100150|O75140-4|DEPDC5;nc|ENSG00000100150|O75140-9|DEPDC5;ENSG00000100150|ENST00000651528|DEPDC5;nc|ENSG00000100150|O75140-2|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 nc|ENSG00000100150|O75140-6|DEPDC5 MSMS AL20221201_MKP_PDAC_01 4 378.5333557128906 3 378.555962 1132.64606 NaN NaN NaN NaN NaN NaN NaN 22.717 1 19.939 19.439 20.439 -2.7784 0 0 0 0.84211 1 12237 12237 2.4985 0.41248 1 39906 16082 26677 27194 46752 46752 0.08503868549951221 MILWPFQVF 9 Unmodified _MILWPFQVF_ 0 0 0 REV__ENSG00000106479|ENST00000223210|ZNF862 REV__ENSG00000106479|ENST00000223210|ZNF862 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.22802734375 2 590.814813 1179.61507 0.26435 0.00015618 1.9013 0.0011233 2.1656 0.0012795 590.8155408292076 72.718 0.16272 72.718 72.657 72.819 0 14 8 2 0 0 0 0.21242 1 40463 40463 5.2307 0.90143 1 521870 + 39907 18511 26678 27195 46753 46753 0.03245038507316167 MINELAVAM 9 2 Oxidation (M) _M(Oxidation (M))INELAVAM(Oxidation (M))_ M(1)INELAVAM(1) M(68)INELAVAM(68) 0 0 2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2461547851562 2 512.246103 1022.47765 0.077362 3.9628E-05 0.65968 0.00033792 0.73704 0.00037755 512.2466151428085 43.548 0.48311 43.548 43.3 43.784 0 56 23 3 0 0 0 0.015445 1 23704 23704 68.081 24.222 1 38750000 39908 1440 26679 27196 46754 46754 243;244 -0.03268658154388504 MINELAVAM 9 2 Oxidation (M) _M(Oxidation (M))INELAVAM(Oxidation (M))_ M(1)INELAVAM(1) M(59)INELAVAM(59) 0 0 2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2470703125 2 512.246103 1022.47765 0.90951 0.00046589 -1.3825 -0.0007082 -0.47302 -0.0002423 512.2459216961335 50.764 0.20848 45.115 44.975 45.184 -5.649 17 12 2 0 0 0 0.024882 1 31904 31904 58.679 31.05 1 16355000 39909 1440 26679 27196 46755 46755 243;244 -0.03268658154388504 MINELAVAM 9 Unmodified _MINELAVAM_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2523803710938 2 496.251188 990.487824 0.57908 0.00028737 0.25919 0.00012862 0.83827 0.00041599 496.25142375834486 77.463 0.57954 71.287 70.919 71.498 -6.1757 56 33 2 0 0 0 0.039985 2 50646 50520;50646 49.933 19.708 1 22971000 39910 1440 26679 27197 46756;46757 46757 -0.007800504291594734 MINEMSKPKIF 11 Unmodified _MINEMSKPKIF_ 0 0 0 REV__nc|ENSG00000075711|Q12959-8|DLG1 REV__nc|ENSG00000075711|Q12959-8|DLG1 MSMS AL20221201_MKP_PDAC_01 4 669.3528442382812 2 669.351434 1336.68831 NaN NaN NaN NaN NaN NaN NaN 102.28 1 96.102 95.602 96.602 -6.1757 0 0 0 0.84159 1 68639 68639 10.074 1.3285 1 + 39911 17576 26680 27198 46758 46758 0.03343799167646466 MINGVVKAY 9 Oxidation (M) _M(Oxidation (M))INGVVKAY_ M(1)INGVVKAY M(42)INGVVKAY 0 0 1 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7709045410156 2 505.770603 1009.52665 -0.056104 -2.8376E-05 -0.39845 -0.00020153 -0.45456 -0.0002299 505.77044688708463 33.409 0.1693 33.409 33.264 33.434 0 15 8 2 0 0 0 0.06187 1 17503 17503 42.095 19.642 1 4371700 39912 8680 26681 27199 46759 46759 1467 0.022269981968747743 MINGVVKAY 9 Unmodified _MINGVVKAY_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7728576660156 2 497.773145 993.531738 0.63317 0.00031517 -0.84958 -0.0004229 -0.21642 -0.00010773 497.7725969144604 44.908 0.28376 40.056 39.905 40.188 -4.852 38 18 3 0 0 0 0.047196 1 27427 27427 46.021 17.848 1 12430000 39913 8680 26681 27200 46760 46760 0.03471302059483605 MINKYGKNLLN 11 Unmodified _MINKYGKNLLN_ 0 0 0 ENST00000416283.6_1_7:77522925-77530034:+|nuORF ENST00000416283.6_1_7:77522925-77530034:+|nuORF ENST00000416283.6_1_7:77522925-77530034:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.5763549804688 3 436.57619 1306.70674 0.38436 0.0001678 0.89737 0.00039177 1.2817 0.00055957 436.9107931278732 56.6 0.66473 56.532 56.115 56.78 -0.068737 77 33 3 0 0 0 0.67037 1 30759 30759 7.0371 1.6344 1 10857000 39914 13040 26682 27201 46761 46761 0.06565677133880854 MINKYGKNLLN 11 Unmodified _MINKYGKNLLN_ 0 0 0 ENST00000416283.6_1_7:77522925-77530034:+|nuORF ENST00000416283.6_1_7:77522925-77530034:+|nuORF ENST00000416283.6_1_7:77522925-77530034:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 436.5771484375 3 436.57619 1306.70674 NaN NaN NaN NaN NaN NaN NaN 75.785 1 69.609 69.109 70.109 -6.1757 0 0 0 0.93737 1 49569 49569 4.4062 0.21665 1 39915 13040 26682 27201 46762 46762 0.06565677133880854 MINLIRFV 8 Unmodified _MINLIRFV_ 0 0 0 REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2986145019531 2 503.29933 1004.58411 0.14273 7.1837E-05 4.3943 0.0022116 4.537 0.0022835 503.30264771036883 72.854 0.62134 72.895 72.487 73.108 0.041725 73 29 3 0 0 0 0.72953 2 39966 39966;40068 14.582 2.9414 1 18540000 + 39916 24855 26683 27202 46763;46764 46763 0.08199885193118917 MIPVSARW 8 Unmodified _MIPVSARW_ 0 0 0 REV__ENST00000451813.6_2_20:33590679-33590952:-|nuORF REV__ENST00000451813.6_2_20:33590679-33590952:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2602844238281 2 480.260205 958.505857 0.1886 9.0578E-05 1.4161 0.00068012 1.6047 0.00077069 480.2608736322829 93.127 0.20883 86.951 86.84 87.049 -6.1757 23 14 2 0 0 0 0.70294 1 61602 61602 16.942 1.1741 1 21657000 + 39917 27210 26684 27203 46765 46765 0.024944526078684248 MIQVFDQSL 9 Unmodified _MIQVFDQSL_ 0 0 0 REV__ENSG00000110367|ENST00000534980|DDX6 REV__ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7731323242188 2 540.773342 1079.53213 -0.057488 -3.1088E-05 0.14341 7.7553E-05 0.085923 4.6465E-05 540.7728852134356 39.873 0.38297 39.576 39.33 39.713 -0.29716 31 18 3 0 0 0 0.12424 1 21081 21081 30.637 0 1 3961800 + 39918 18706 26685 27204 46766 46766 -0.004453230113085738 MIRAAPPPL 9 Unmodified _MIRAAPPPL_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MSMS AL20221201_MKP_PDAC_01 4 483.2835693359375 2 483.28368 964.552807 NaN NaN NaN NaN NaN NaN NaN 53.514 1 47.71 47.21 48.21 -5.8042 0 0 0 0.12337 1 33832 33832 39.957 11.47 1 39919 878 26686 27205 46767 46767 0.06911312159002136 MIRLDEVPNL 10 Unmodified _MIRLDEVPNL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.55517578125 3 400.553274 1198.63799 NaN NaN NaN NaN NaN NaN NaN 15.921 1 15.926 15.426 16.426 0.0050564 0 0 0 0.98857 1 7958 7958 1.9064 0.45126 1 39920 1899 26687 27206 46768 46768 0.046620128341828604 MIRLRRYKILI 11 Unmodified _MIRLRRYKILI_ 0 0 0 REV__ENSG00000183625|ENST00000395940|CCR3 REV__ENSG00000183625|ENST00000395940|CCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 737.9735107421875 2 737.973773 1473.93299 NaN NaN NaN NaN NaN NaN NaN 84.512 1 84.575 84.075 85.075 0.063171 0 0 0 0.94301 1 46766 46766 0.35063 0.043601 1 + 39921 23360 26688 27207 46769 46769 0.21498465763625063 MIRNEFSF 8 Unmodified _MIRNEFSF_ 0 0 0 REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF REV__ENST00000330198.8_2_3:197765919-197766228:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2742919921875 2 522.252577 1042.4906 0.31136 0.00016261 -1.0009 -0.00052272 -0.68954 -0.00036012 522.7532530529998 78.587 0.21915 78.64 78.532 78.752 0.052452 16 8 3 0 0 0 8.7369 1 43393 43393 23.148 0 1 1170400 + 39922 25589 26689 27208 46770 46770 -0.028944589799721143 MIRNMVLF 8 Unmodified _MIRNMVLF_ 0 0 0 ENST00000262039.8_1_18:39570471-39573261:+|nuORF ENST00000262039.8_1_18:39570471-39573261:+|nuORF ENST00000262039.8_1_18:39570471-39573261:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.7554321289062 2 512.277541 1022.54053 0.51767 0.00026519 1.8238 0.00093427 2.3414 0.0011995 512.2795775098656 80.685 0.10474 74.509 74.462 74.566 -6.1757 6 5 2 0 0 0 8.7369 1 52910 52910 28.173 3.4993 1 7053400 39923 11256 26690 27209 46771 46771 0.03015952424311763 MISAVMWK 8 Unmodified _MISAVMWK_ 0 0 0 ENST00000464978.5_1_6:88221352-88221400:+|nuORF ENST00000464978.5_1_6:88221352-88221400:+|nuORF ENST00000464978.5_1_6:88221352-88221400:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 967.4969482421875 1 965.494706 964.48743 0.23553 0.0002274 -1.1916 -0.0011504 -0.95603 -0.00092304 965.4934017619623 53.997 0.67108 53.53 53.19 53.861 -0.46664 79 33 3 0 0 0 0.80143 1 29147 29147 5.7604 0.52976 1 7907800 39924 13726 26691 27210 46772 46772 0.0037657464165476995 MISEGLDPDLL 11 Unmodified _MISEGLDPDLL_ 0 0 0 ENST00000541569.5_1_12:102419750-102455740:-|nuORF;ENSG00000120860|ENST00000240079|WASHC3 ENST00000541569.5_1_12:102419750-102455740:-|nuORF ENST00000541569.5_1_12:102419750-102455740:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.802978515625 2 601.802297 1201.59004 0.10393 6.2544E-05 1.8435 0.0011094 1.9474 0.0011719 601.8032767578329 65.64 0.20461 65.155 65.041 65.246 -0.48428 14 8 2 0 0 0 0.56638 1 35844 35844 13.042 2.2185 1 752760 39925 3546 26692 27211 46773 46773 -0.0026910587655493146 MISEGLDPDLL 11 Unmodified _MISEGLDPDLL_ 0 0 0 ENST00000541569.5_1_12:102419750-102455740:-|nuORF;ENSG00000120860|ENST00000240079|WASHC3 ENST00000541569.5_1_12:102419750-102455740:-|nuORF ENST00000541569.5_1_12:102419750-102455740:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 601.802297 1201.59004 0.47056 0.00028319 3.3906 0.0020405 3.8612 0.0023237 601.804849642969 65.171 0.14361 65.171 65.056 65.2 1.5259E-05 0.0075962 0.0016707 NaN 13.042 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1016600 39926 3546 26692 27211 -0.0026910587655493146 MISLSECMVQF 11 Unmodified _MISLSECMVQF_ 0 0 0 ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.294189453125 2 644.292727 1286.5709 -0.36904 -0.00023777 0.81806 0.00052707 0.44902 0.0002893 644.2937952840651 37.26 0.1699 36.989 36.897 37.067 -0.27133 15 6 3 0 0 0 0.65108 1 19587 19587 8.7454 2.5396 1 2107200 39927 10614 26693 27212 46774 46774 -0.06092101763465507 MISLTARSSL 10 Unmodified _MISLTARSSL_ 0 0 0 nc|ENSG00000144619|Q8IWV2-2|CNTN4;ENST00000484686.1_1_3:3081693-3097901:+|nuORF;nc|ENSG00000144619|Q8IWV2-3|CNTN4;nc|ENSG00000144619|Q8IWV2-4|CNTN4;ENSG00000144619|ENST00000418658|CNTN4 nc|ENSG00000144619|Q8IWV2-2|CNTN4 nc|ENSG00000144619|Q8IWV2-2|CNTN4 MSMS AL20221201_MKP_PDAC_01 4 360.2012329101562 3 360.202353 1077.58523 NaN NaN NaN NaN NaN NaN NaN 17.002 1 14.416 13.916 14.916 -2.5866 0 0 0 0.75165 1 8853 8853 14.405 9.1085 1 39928 5623 26694 27213 46775 46775 0.049540547713377237 MISNQGGHTV 10 Unmodified _MISNQGGHTV_ 0 0 0 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2525024414062 2 522.250566 1042.48658 1.6769 0.00087574 2.3607 0.0012329 4.0376 0.0021086 522.2524835961386 100.83 0.21883 94.657 94.515 94.734 -6.1757 59 14 7 0 0 0 0.35903 1 67454 67454 24.021 1.5679 1 152970000 + 39929 22331 26695 27214 46776 46776 -0.03296548473713301 MITNKKSYF 9 Unmodified _MITNKKSYF_ 0 0 0 REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF REV__ENST00000519276.1_1_5:158701561-158711936:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7640991210938 2 566.296985 1130.57942 0.63241 0.00035813 0.89587 0.00050733 1.5283 0.00086546 566.2984104591552 88.118 0.26845 87.613 87.482 87.75 -0.50423 22 10 3 0 0 0 0.19298 1 48201 48201 13.508 1.8676 1 478050 + 39930 21908 26696 27215 46777 46777 0.019349562596744363 MIVDPFQIL 9 Unmodified _MIVDPFQIL_ 0 0 0 ENST00000489476.5_1_2:73956300-73964431:-|nuORF ENST00000489476.5_1_2:73956300-73964431:-|nuORF ENST00000489476.5_1_2:73956300-73964431:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2955322265625 2 538.296453 1074.57835 1.2366 0.00066566 -1.0489 -0.00056464 0.18766 0.00010102 538.295537557307 64.371 1.2139 58.196 57.704 58.917 -6.1757 107 66 2 0 0 0 0.14602 1 41616 41616 28.487 3.813 1 152240000 39931 14239 26697 27216 46778 46778 0.044047418907666724 MIVHSVDDF 9 Unmodified _MIVHSVDDF_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL;ENST00000433827.2_1_1:47765575-47767319:-|nuORF ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.8049926757812 2 531.749867 1061.48518 0.62856 0.00033424 -4.3386 -0.002307 -3.71 -0.0019728 531.748848399566 67.67 0.36494 61.495 61.236 61.601 -6.1757 24 20 2 0 0 0 0.203 1 43920 43920 2.3027 0 1 16466000 39932 3712 26698 27217 46779 46779 -0.04310182562448972 MIVKELQNF 9 Unmodified _MIVKELQNF_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.30419921875 2 561.30481 1120.59507 1.0925 0.0006132 1.1103 0.00062322 2.2028 0.0012364 561.3047668529188 57.168 0.94724 51.141 50.857 51.804 -6.0275 88 53 4 0 0 0 0.14 1 36683 36683 29.082 6.3453 1 72128000 39933 7273 26699 27218 46780 46780 0.039592427767274785 MIYITCHL 8 Unmodified _MIYITCHL_ 0 0 0 ENSG00000188372|ENST00000394857|ZP3;nc|ENSG00000188372|P21754-2|ZP3;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000146707|ENST00000310842|POMZP3 ENSG00000188372|ENST00000394857|ZP3 ENSG00000188372|ENST00000394857|ZP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2493896484375 2 497.248449 992.482345 0.33566 0.00016691 0.85413 0.00042472 1.1898 0.00059162 497.24898643433056 59.126 0.29589 59.126 58.945 59.241 0 17 12 2 0 0 0 0.80044 1 32936 32936 6.3541 0 1 880560 39934 9654 26700 27219 46781 46781 -0.014197292209814805 MKALAAGIIFT 11 Unmodified _MKALAAGIIFT_ 0 0 0 REV__ENSG00000153822|ENST00000392671|KCNJ16 REV__ENSG00000153822|ENST00000392671|KCNJ16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.7228698730469 3 379.222977 1134.6471 0.72212 0.00027385 -2.8259 -0.0010716 -2.1038 -0.00079779 379.22320267200894 16.794 0.19538 14.237 14.157 14.353 -2.557 46 32 2 0 0 0 0.30403 1 8712 8712 4.7159 1.1289 1 2007800 + 39935 21187 26701 27220 46782 46782 0.08516406190483394 MKDLRREHEG 10 Unmodified _MKDLRREHEG_ 0 0 0 REV__nc|ENSG00000110274|Q9UPV0-2|CEP164 REV__nc|ENSG00000110274|Q9UPV0-2|CEP164 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8187255859375 2 635.819678 1269.6248 NaN NaN NaN NaN NaN NaN NaN 28.041 1 28.041 27.541 28.541 0 0 0 0 0.63617 1 14468 14468 29.082 10.36 1 + 39936 18701 26702 27221 46783 46783 0.0007757477476388885 MKFIGVLDKL 10 Unmodified _MKFIGVLDKL_ 0 0 0 REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1 REV__nc|ENSG00000196151|Q8N9V3-2|WDSUB1 MSMS AL20221201_MKP_PDAC_01 4 582.345947265625 2 582.346477 1162.6784 NaN NaN NaN NaN NaN NaN NaN 91.051 1 84.875 84.375 85.375 -6.1757 0 0 0 0.24492 1 60179 60179 40.239 5.3071 1 + 39937 23796 26703 27222 46784 46784 0.10356979224593488 MKGQASLK 8 Unmodified _MKGQASLK_ 0 0 0 REV__ENSG00000146267|ENST00000389677|FAXC REV__ENSG00000146267|ENST00000389677|FAXC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7453002929688 2 431.744388 861.474223 1.1724 0.00050616 0.88403 0.00038167 2.0564 0.00088783 431.74477905267554 66.344 0.3361 66.353 66.183 66.519 0.0095596 38 16 3 0 0 0 0.57045 1 36386 36386 28.487 3.0875 1 7426600 + 39938 20822 26704 27223 46785 46785 0.03794459853918397 MKGYVVKW 8 Unmodified _MKGYVVKW_ 0 0 0 REV__ENST00000356352.6_1_10:12046609-12046696:-|nuORF REV__ENST00000356352.6_1_10:12046609-12046696:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7339477539062 2 505.778231 1009.54191 0.02397 1.2123E-05 1.1158 0.00056437 1.1398 0.0005765 505.7786716990615 31.784 0.2612 31.784 31.619 31.88 0 19 12 2 0 0 0 8.7369 1 16587 16587 9.3474 3.1417 1 1360900 + 39939 25824 26705 27224 46786 46786 0.037519097847280136 MKHREKHKK 9 Unmodified _MKHREKHKK_ 0 0 0 REV__ENSG00000174720|ENST00000344442|LARP7 REV__ENSG00000174720|ENST00000344442|LARP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.9073181152344 3 407.904753 1220.69243 3.853 0.0015717 2.5097 0.0010237 6.3627 0.0025954 407.90593046241173 99.312 0.4651 99.284 98.948 99.413 -0.028282 38 16 3 0 0 0 0.61381 1 55156 55156 0.23584 0.23584 1 4788200 + 39940 22812 26706 27225 46787 46787 0.09091069496230375 MKIKRMNE 8 Unmodified _MKIKRMNE_ 0 0 0 ENST00000445169.1_1_7:7607144-7607276:+|nuORF ENST00000445169.1_1_7:7607144-7607276:+|nuORF ENST00000445169.1_1_7:7607144-7607276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7830810546875 2 525.283354 1048.55216 1.1002 0.0005779 -1.7689 -0.00092918 -0.66876 -0.00035129 525.7819643383472 93.971 0.52036 87.795 87.412 87.932 -6.1757 53 29 3 0 0 0 0.73714 1 62275 62275 12.532 0 1 7439000 39941 13450 26707 27226 46788 46788 0.029821494476664157 MKILKFMAKI 10 Unmodified _MKILKFMAKI_ 0 0 0 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 ENSG00000198934|ENST00000361470|MAGEE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8743896484375 2 611.874348 1221.73414 NaN NaN NaN NaN NaN NaN NaN 16.411 1 16.416 15.916 16.916 0.0050564 0 0 0 1.0061 1 8228 8228 0 0 1 39942 10204 26708 27227 46789 46789 0.13214489140545993 MKKARYYI 8 Unmodified _MKKARYYI_ 0 0 0 REV__ENSG00000125482|ENST00000334270|TTF1 REV__ENSG00000125482|ENST00000334270|TTF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2037048339844 3 358.203917 1071.58992 NaN NaN NaN NaN NaN NaN NaN 34.165 1 34.194 33.694 34.694 0.028934 0 0 0 0.97444 1 18000 18000 1.6526 0 1 + 39943 19494 26709 27228 46790 46790 0.05698983704769489 MKKFEEDLL 9 Unmodified _MKKFEEDLL_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.80419921875 2 576.8021 1151.58965 1.2396 0.00071498 -1.3184 -0.00076046 -0.078861 -4.5487E-05 576.8016710085044 87.825 1.2948 81.649 80.982 82.276 -6.1757 258 71 5 0 0 0 0.48152 1 57651 57651 8.5933 0.68312 1 235860000 39944 2308 26710 27229 46791 46791 0.019915191942573074 MKKKKKLAK 9 Unmodified _MKKKKKLAK_ 0 0 0 REV__nc|ENSG00000105825|P48307-2|TFPI2 REV__nc|ENSG00000105825|P48307-2|TFPI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2962951660156 3 368.254612 1101.74201 NaN NaN NaN NaN NaN NaN NaN 102.85 1 102.8 102.3 103.3 -0.047928 0 0 0 0.8622 1 57122 57122 0 0 1 + 39945 18464 26711 27230 46792 46792 0.19520384452334838 MKKLSWSFF 9 Unmodified _MKKLSWSFF_ 0 0 0 REV__ENSG00000254469|ENST00000679412|XNDC1N REV__ENSG00000254469|ENST00000679412|XNDC1N MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2057495117188 3 391.875689 1172.60524 -0.055357 -2.1693E-05 -3.0815 -0.0012076 -3.1368 -0.0012292 391.87577889943935 16.905 0.25438 16.91 16.844 17.099 0.0050564 40 26 2 0 0 0 0.58865 1 8538 8538 1.0715 0 1 740880 + 39946 24523 26712 27231 46793 46793 0.02583850501946472 MKKRRMFY 8 Unmodified _MKKRRMFY_ 0 0 0 ENST00000427859.5_1_1:239870879-239871044:-|nuORF ENST00000427859.5_1_1:239870879-239871044:-|nuORF ENST00000427859.5_1_1:239870879-239871044:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5430297851562 3 387.212418 1158.61542 NaN NaN NaN NaN NaN NaN NaN 20.358 1 20.368 19.868 20.868 0.010553 0 0 0 0.97444 1 10381 10381 1.6526 1.1981 1 39947 13200 26713 27232 46794 46794 0.042461349555651395 MKKYSFDLF 9 Unmodified _MKKYSFDLF_ 0 0 0 REV__ENST00000321037.4_1_6:46111312-46111369:+|nuORF REV__ENST00000321037.4_1_6:46111312-46111369:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5365905761719 3 393.535332 1177.58417 NaN NaN NaN NaN NaN NaN NaN 18.578 1 18.584 18.084 19.084 0.0060463 0 0 0 0.84564 1 9420 9420 1.0715 0 1 + 39948 25509 26714 27233 46795 46795 0.0024784040244867356 MKLIVHPGKL 10 Unmodified _MKLIVHPGKL_ 0 0 0 REV__ENSG00000212864|ENST00000391553|RNF208 REV__ENSG00000212864|ENST00000391553|RNF208 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2384643554688 3 379.23885 1134.69472 0.91207 0.00034589 -1.3733 -0.00052081 -0.46123 -0.00017492 379.2381365173155 63.921 0.58616 63.91 63.49 64.077 -0.010532 93 28 4 0 0 0 0.71981 1 35051 35051 0.69767 0.69767 1 16127000 + 39949 24269 26715 27234 46796 46796 0.13276105181330422 MKLIVSCH 8 Unmodified _MKLIVSCH_ 0 0 0 REV__nc|ENSG00000231852|P08686-2|CYP21A2 REV__nc|ENSG00000231852|P08686-2|CYP21A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7506103515625 2 465.748616 929.482679 NaN NaN NaN NaN NaN NaN NaN 97.82 1 97.577 97.077 98.077 -0.24277 0 0 0 0.97444 1 53421 53421 2.5775 0 1 + 39950 24407 26716 27235 46797 46797 0.01511690498898588 MKLIVSCH 8 Unmodified _MKLIVSCH_ 0 0 0 REV__nc|ENSG00000231852|P08686-2|CYP21A2 REV__nc|ENSG00000231852|P08686-2|CYP21A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7506103515625 2 465.748616 929.482679 NaN NaN NaN NaN NaN NaN NaN 97.064 1 97.057 96.557 97.557 -0.007019 0 0 0 0.97444 1 53907 53907 2.5775 0 1 + 39951 24407 26716 27235 46798 46798 0.01511690498898588 MKLIVSCH 8 Unmodified _MKLIVSCH_ 0 0 0 REV__nc|ENSG00000231852|P08686-2|CYP21A2 REV__nc|ENSG00000231852|P08686-2|CYP21A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7508544921875 2 465.748616 929.482679 NaN NaN NaN NaN NaN NaN NaN 97.662 1 97.644 97.144 98.144 -0.018188 0 0 0 0.97444 1 54260 54260 2.5775 0 1 + 39952 24407 26716 27235 46799 46799 0.01511690498898588 MKLLATHTL 9 Unmodified _MKLLATHTL_ 0 0 0 REV__ENSG00000130023|ENST00000366773|ERMARD REV__ENSG00000130023|ENST00000366773|ERMARD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.3038940429688 2 514.30207 1026.58959 NaN NaN NaN NaN NaN NaN NaN 55.665 1 55.665 55.165 56.165 0 0 0 0 0.46757 1 30931 30931 16.942 0 1 + 39953 19691 26717 27236 46800 46800 0.07735563984920191 MKLLKKLIR 9 Unmodified _MKLLKKLIR_ 0 0 0 REV__ENST00000379463.6_1_16:66850506-66850557:-|nuORF REV__ENST00000379463.6_1_16:66850506-66850557:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1143.120727539062 1 1142.78058 1141.77331 0.41884 0.00047865 0.45202 0.00051656 0.87086 0.00099521 1142.7833000878722 14.103 0.089638 14.111 14.058 14.148 0.0073986 8 3 3 0 0 0 0.21893 1 6986 6986 0.52476 0 1 13506000 + 39954 26284 26718 27237 46801 46801 0.2080895748642888 MKLLMLLLI 9 Unmodified _MKLLMLLLI_ 0 0 0 REV__ENST00000346329.7_1_11:70281328-70281493:+|nuORF REV__ENST00000346329.7_1_11:70281328-70281493:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8533325195312 2 544.352717 1086.69088 -0.59788 -0.00032546 0.097241 5.2934E-05 -0.50063 -0.00027252 544.3526516208993 105.92 0.11847 105.87 105.82 105.94 -0.048103 25 17 2 0 0 0 0.62242 1 58717 58717 0 0 1 3378200 + 39955 25760 26719 27238 46802 46802 0.151002993632801 MKLLMLLLI 9 Unmodified _MKLLMLLLI_ 0 0 0 REV__ENST00000346329.7_1_11:70281328-70281493:+|nuORF REV__ENST00000346329.7_1_11:70281328-70281493:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 544.352717 1086.69088 -0.59788 -0.00032546 0.097241 5.2934E-05 -0.50063 -0.00027252 544.3526516208993 105.92 0.11847 105.87 105.82 105.94 -0.048103 0 0 NaN 0 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3378200 + 39956 25760 26719 27238 0.151002993632801 MKLRWFLKRWR 11 Unmodified _MKLRWFLKRWR_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 810.4768676757812 2 810.477015 1618.93948 NaN NaN NaN NaN NaN NaN NaN 97.008 1 96.703 96.203 97.203 -0.30472 0 0 0 0.9435 1 52976 52976 0 0 1 39957 6029 26720 27239 46803 46803 0.15476403714956177 MKLRWFLKRWR 11 Unmodified _MKLRWFLKRWR_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-4|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 810.4755859375 2 810.477015 1618.93948 NaN NaN NaN NaN NaN NaN NaN 96.26 1 96.253 95.753 96.753 -0.007019 0 0 0 0.9435 1 53466 53466 0 0 1 39958 6029 26720 27239 46804 46804 0.15476403714956177 MKLWCMTRES 10 Unmodified _MKLWCMTRES_ 0 0 0 REV__nc|ENSG00000137857|Q9NRD9-2|DUOX1 REV__nc|ENSG00000137857|Q9NRD9-2|DUOX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.7984619140625 2 642.798511 1283.58247 NaN NaN NaN NaN NaN NaN NaN 15.541 1 15.547 15.047 16.047 0.0057774 0 0 0 1.0024 1 7749 7749 0.40072 0 1 + 39959 29655 26721 27240 46805 46805 -0.04797859949485428 MKLYLKEYHYK 11 Unmodified _MKLYLKEYHYK_ 0 0 0 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 ENSG00000180008|ENST00000555846|SOCS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 758.406982421875 2 758.405055 1514.79556 0.67223 0.00050982 1.3219 0.0010026 1.9942 0.0015124 758.4060786028183 78.132 0.88012 71.956 71.428 72.308 -6.1757 135 50 3 0 0 0 0.5229 1 50828 50828 15.248 3.0078 1 80042000 39960 8878 26722 27241 46806 46806 0.05875092373548796 MKLYSGLPAGL 11 Unmodified _MKLYSGLPAGL_ 0 0 0 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8200073242188 2 575.32046 1148.62637 0.10578 6.0857E-05 -1.4905 -0.00085753 -1.3847 -0.00079667 575.8200919942757 39.284 0.32774 38.997 38.836 39.164 -0.28687 36 15 3 0 0 0 0.42108 1 20692 20692 20.415 2.2682 1 6667000 39961 2646 26723 27242 46807 46807 0.05799815810837572 MKMRKKKII 9 Unmodified _MKMRKKKII_ 0 0 0 ENST00000549040.5_1_12:106977470-107075774:+|nuORF;ENST00000357881.8_1_12:106995076-107075774:+|nuORF;ENST00000392842.5_1_12:106976790-107075774:+|nuORF ENST00000549040.5_1_12:106977470-107075774:+|nuORF ENST00000549040.5_1_12:106977470-107075774:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3787231445312 2 588.377589 1174.74062 1.4801 0.00087086 0.027281 1.6052E-05 1.5074 0.00088691 588.3772561399695 105.1 0.2608 98.928 98.789 99.05 -6.1757 182 42 6 0 0 0 0.62242 1 70463 70463 0 0 1 15081000000 39962 12119 26724 27243 46808 46808 0.1602442709195202 MKMRPPMFPGE 11 Unmodified _MKMRPPMFPGE_ 0 0 0 REV__nc|ENSG00000110321|P78344-2|EIF4G2 REV__nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8793640136719 3 440.880228 1319.61885 -0.59269 -0.0002613 0.71143 0.00031366 0.11874 5.2352E-05 441.2148983035513 16.424 0.1336 16.425 16.348 16.482 0.0010529 95 37 3 0 0 0 0.74096 1 8062 8062 0.40827 0.26837 1 1336300 + 39963 18702 26725 27244 46809 46809 -0.028169830527758677 MKMSLKCLAA 10 Unmodified _MKMSLKCLAA_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5220336914062 3 365.862286 1094.56503 -0.57164 -0.00020914 0.62327 0.00022803 0.051636 1.8892E-05 365.8624948182019 18.228 0.12742 18.242 18.177 18.304 0.013865 42 25 2 0 0 0 0.71123 1 9102 9102 0.69767 0 1 2214200 39964 7825 26726 27245 46810 46810 0.021528445155354348 MKNDEDSGDPC 11 Unmodified _MKNDEDSGDPC_ 0 0 0 REV__ENSG00000154646|ENST00000284885|TMPRSS15 REV__ENSG00000154646|ENST00000284885|TMPRSS15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1488647460938 3 404.149877 1209.4278 NaN NaN NaN NaN NaN NaN NaN 5.3207 1 5.2432 4.7432 5.7432 -0.07749 0 0 0 0.94337 1 2628 2628 0.094841 0.094841 1 + 39965 21237 26727 27246 46811 46811 -0.16853437620989098 MKNKSRFF 8 Unmodified _MKNKSRFF_ 0 0 0 ENST00000508737.1_1_4:38930819-38945175:+|nuORF ENST00000508737.1_1_4:38930819-38945175:+|nuORF ENST00000508737.1_1_4:38930819-38945175:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7844848632812 2 529.284211 1056.55387 -0.1797 -9.511E-05 2.1216 0.0011229 1.9419 0.0010278 529.2855626994109 35.124 0.32685 35.124 34.958 35.285 0 33 16 3 0 0 0 0.79669 1 18627 18627 8.5933 0 1 6451400 39966 14565 26728 27247 46812 46812 0.027855265279185915 MKNKSRFF 8 Unmodified _MKNKSRFF_ 0 0 0 ENST00000508737.1_1_4:38930819-38945175:+|nuORF ENST00000508737.1_1_4:38930819-38945175:+|nuORF ENST00000508737.1_1_4:38930819-38945175:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 529.284211 1056.55387 -0.1797 -9.511E-05 2.1216 0.0011229 1.9419 0.0010278 529.2855626994109 35.124 0.32685 35.124 34.958 35.285 0 0 0 NaN 8.5933 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 6451400 39967 14565 26728 27247 0.027855265279185915 MKQPSSLVAAF 11 Unmodified _MKQPSSLVAAF_ 0 0 0 REV__ENST00000391787.6_2_19:52901126-52901768:+|nuORF REV__ENST00000391787.6_2_19:52901126-52901768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5466918945312 3 393.54612 1177.61653 0.88405 0.00034792 0.63291 0.00024908 1.517 0.00059699 393.54640673517366 50.407 0.16182 50.015 49.971 50.133 -0.3923 12 7 2 0 0 0 0.63851 1 27162 27162 4.7159 0 1 3482600 + 39968 26373 26729 27248 46813 46813 0.03482627805442462 MKQSPNNAFK 10 Unmodified _MKQSPNNAFK_ 0 0 0 REV__ELAVL3|p.T210M|1|0.19|ENSG00000196361|chr19:11458145-11458145|G/A|missense_variant REV__ELAVL3|p.T210M|1|0.19|ENSG00000196361|chr19:11458145-11458145|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7955322265625 2 582.79514 1163.57573 0.74244 0.00043269 -0.25375 -0.00014789 0.48869 0.0002848 582.7957597293674 61.547 0.1934 61.514 61.415 61.608 -0.032787 21 9 3 0 0 0 0.48505 1 33590 33590 17.113 1.2657 1 5847300 + 39969 16919 26730 27249 46814 46814 0.00048286485798598733 MKQVPSRVL 9 Unmodified _MKQVPSRVL_ 0 0 0 ENST00000478243.1_1_3:127803929-127806605:-|nuORF ENST00000478243.1_1_3:127803929-127806605:-|nuORF ENST00000478243.1_1_3:127803929-127806605:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5462951660156 3 353.211071 1056.61138 0.86337 0.00030495 -1.8928 -0.00066856 -1.0295 -0.00036361 353.5452888236175 15.906 0.12444 13.349 13.274 13.399 -2.557 37 25 2 0 0 0 0.57331 1 8186 8186 2.9952 0.90923 1 1326600 39970 14011 26731 27250 46815 46815 0.08534368733512565 MKQWSAQVEPT 11 Unmodified _MKQWSAQVEPT_ 0 0 0 REV__ENSG00000213934|ENST00000330597|HBG1 REV__ENSG00000213934|ENST00000330597|HBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5491333007812 3 435.5483 1303.62307 1.0897 0.00047463 -0.89986 -0.00039193 0.18987 8.2699E-05 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.70069 1 10092 10092 1.9275 0 1 1375000000 + 39971 24298 26732 27251 46816 46816 -0.016594790338331222 MKRCLVRMEM 10 Unmodified _MKRCLVRMEM_ 0 0 0 ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENST00000563984.1_1_16:46717374-46723045:-|nuORF ENST00000563984.1_1_16:46717374-46723045:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8855895996094 3 432.885096 1295.63346 NaN NaN NaN NaN NaN NaN NaN 106.57 1 100.4 99.897 100.9 -6.1757 0 0 0 0.9997 1 71331 71331 0.69767 0 1 39972 15373 26733 27252 46817 46817 -0.002532341762616852 MKREMHPQHF 10 Unmodified _MKREMHPQHF_ 0 0 0 REV__ENSG00000161594|ENST00000293303|KLHL10 REV__ENSG00000161594|ENST00000293303|KLHL10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.8838500976562 3 447.54987 1339.62778 0.21631 9.681E-05 -0.21843 -9.776E-05 -0.0021219 -9.4965E-07 447.54992753454644 63.456 0.24498 62.97 62.816 63.061 -0.48617 25 10 3 0 0 0 0.71123 1 34645 34645 0.69767 0 1 2225200 + 39973 21598 26734 27253 46818 46818 -0.028448733720779273 MKRHTMQEEI 10 Unmodified _MKRHTMQEEI_ 0 0 0 REV__nc|ENSG00000151914|Q03001-3|DST REV__nc|ENSG00000151914|Q03001-3|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8815307617188 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 103.48 1 103.48 102.98 103.98 0 0 0 0 1.0024 1 57046 57046 0.13989 0.017027 1 + 39974 29706 26735 27254 46819 46819 -0.016720166743880327 MKRHTMQEEI 10 Unmodified _MKRHTMQEEI_ 0 0 0 REV__nc|ENSG00000151914|Q03001-3|DST REV__nc|ENSG00000151914|Q03001-3|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8829040527344 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 8.4867 1 8.5042 8.0042 9.0042 0.017581 0 0 0 1.0024 1 4224 4224 0.13989 0 1 + 39975 29706 26735 27254 46820 46820 -0.016720166743880327 MKRWWILT 8 Unmodified _MKRWWILT_ 0 0 0 ENST00000375400.7_1_10:29975496-29975577:-|nuORF ENST00000375400.7_1_10:29975496-29975577:-|nuORF ENST00000375400.7_1_10:29975496-29975577:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 567.318359375 2 567.318054 1132.62156 NaN NaN NaN NaN NaN NaN NaN 18.209 1 15.588 15.088 16.088 -2.6215 0 0 0 0.97444 1 9579 9579 2.3027 0 1 39976 12475 26736 27255 46821 46821 0.060549764587221944 MKSGGGGG 8 Unmodified _MKSGGGGG_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.294921875 1 650.292636 649.285359 -0.66938 -0.00043529 3.2785 0.002132 2.6092 0.0016967 650.2961450817082 48.532 0.55932 48.532 48.293 48.852 0 34 26 2 0 0 0 0.80975 2 26651 26651;26823 0.79363 0 1 2040400 39977 8707 26737 27256 46822;46823 46822 -0.05331192719529554 MKSIMWGVF 9 Unmodified _MKSIMWGVF_ 0 0 0 ENST00000431580.1_1_20:25715260-25715392:+|nuORF ENST00000431580.1_1_20:25715260-25715392:+|nuORF ENST00000431580.1_1_20:25715260-25715392:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.8733215332031 3 366.854008 1097.54019 1.2675 0.00046498 3.5786 0.0013128 4.8461 0.0017778 366.8562017676079 40.536 0.063725 36.006 35.952 36.016 -4.5294 5 3 2 0 0 0 0.21367 1 24218 24218 2.7352 0 1 2294900 39978 13262 26738 27257 46824 46824 -0.0046746729553888144 MKSRVHKY 8 Unmodified _MKSRVHKY_ 0 0 0 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 ENSG00000174799|ENST00000257287|CEP135 MSMS AL20221201_MKP_PDAC_01 4 350.2200622558594 3 350.195533 1047.56477 NaN NaN NaN NaN NaN NaN NaN 41.299 1 36.691 36.191 37.191 -4.6079 0 0 0 0.94494 1 24784 24784 8.7454 0 1 39979 8459 26739 27258 46825 46825 0.04288928902224143 MKVKKGGG 8 Unmodified _MKVKKGGG_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119;ENST00000578434.1_1_17:26879057-26879575:-|nuORF ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7419128417969 2 402.741648 803.468743 -0.42429 -0.00017088 1.2029 0.00048448 0.77865 0.0003136 402.7421699772139 31.822 1.1585 31.852 31.432 32.591 0.030104 111 51 3 0 0 0 0.80992 1 16762 16762 0.69038 0 1 24389000 39980 2630 26740 27259 46826 46826 0.05914781062131169 MKVLLPLPWL 10 Unmodified _MKVLLPLPWL_ 0 0 0 REV__ENST00000515528.1_1_5:73981085-73985366:+|nuORF REV__ENST00000515528.1_1_5:73981085-73985366:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9175415039062 3 403.919117 1208.73552 NaN NaN NaN NaN NaN NaN NaN 38.384 1 38.401 37.901 38.901 0.01704 0 0 0 0.9997 1 20409 20409 0.69767 0.19171 1 + 39981 17255 26741 27260 46827 46827 0.13950446500962244 MKVVVRAL 8 Unmodified _MKVVVRAL_ 0 0 0 ENSG00000136546|ENST00000643258|SCN7A;ENST00000424326.5_1_2:167262092-167297919:-|nuORF ENSG00000136546|ENST00000643258|SCN7A ENSG00000136546|ENST00000643258|SCN7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2615051269531 2 458.294048 914.573543 NaN NaN NaN NaN NaN NaN NaN 72.346 1 72.346 71.846 72.846 0 0 0 0 0.97444 1 40285 40285 0.69038 0 1 39982 4836 26742 27261 46828 46828 0.11283902538684742 MKYEEKKRVTF 11 Unmodified _MKYEEKKRVTF_ 0 0 0 REV__ENSG00000185010|ENST00000360256|F8 REV__ENSG00000185010|ENST00000360256|F8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.9323120117188 3 486.930633 1457.77007 NaN NaN NaN NaN NaN NaN NaN 27.509 1 27.538 27.038 28.038 0.028664 0 0 0 0.92174 1 14298 14298 6.2344 2.1177 1 + 39983 23462 26743 27262 46829 46829 0.05949617851069888 MLAAFLGMVL 10 Unmodified _MLAAFLGMVL_ 0 0 0 REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5 REV__nc|ENSG00000145740|Q8TAD4-2|SLC30A5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.2545776367188 2 533.295399 1064.57624 0.64605 0.00034453 0.37164 0.00019819 1.0177 0.00054272 533.2955485442207 43.307 0.34284 38.542 38.448 38.791 -4.7648 34 23 2 0 0 0 0.21472 1 26268 26268 24.674 10.768 1 27846000 + 39984 20792 26744 27263 46830 46830 0.04653989881308007 MLAHVRTL 8 Unmodified _MLAHVRTL_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7731323242188 2 470.77348 939.532406 0.28365 0.00013354 0.013504 6.3573E-06 0.29716 0.00013989 470.7722324188194 59.205 0.67897 59.152 58.554 59.233 -0.053062 62 33 4 0 0 0 0.80722 1 32196 32196 2.3027 0 1 5322200 39985 5924 26745 27264 46831 46831 0.0602214149921565 MLAIAMCI 8 Unmodified _MLAIAMCI_ 0 0 0 REV__nc|ENSG00000130826|O60832-2|DKC1 REV__nc|ENSG00000130826|O60832-2|DKC1 MSMS AL20221201_MKP_PDAC_01 4 433.2225341796875 2 433.220845 864.427138 NaN NaN NaN NaN NaN NaN NaN 93.733 1 87.557 87.057 88.057 -6.1757 0 0 0 0.9706 1 62059 62059 6.3541 0 1 + 39986 19748 26746 27265 46832 46832 -0.010498590130737284 MLAPHFVDL 9 Unmodified _MLAPHFVDL_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;ENST00000316846.2_11:65545618-65547282:-|nuORF;AP5B1|p.L537Pfs*67|1|0.09|ENSG00000254470|chr11:65778875-65778885|GCCAGCAAAGA/-|frameshift_variant ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.771484375 2 521.773145 1041.53174 1.0503 0.00054802 -2.8753 -0.0015003 -1.825 -0.00095224 521.7718831289008 34.951 0.57524 30.855 30.599 31.174 -4.0951 57 33 2 0 0 0 0.052168 2 20231 20105;20231 44.407 10.305 1 27005000 39987 10774 26747 27266 46833;46834 46834 0.012633020594876143 MLASDILL 8 Oxidation (M) _M(Oxidation (M))LASDILL_ M(1)LASDILL M(40)LASDILL 0 0 1 REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 891.4832153320312 1 891.485582 890.478305 -0.98349 -0.00087677 -2.3809 -0.0021225 -3.3644 -0.0029993 891.483361725715 77.095 0.48759 76.612 76.297 76.784 -0.48244 26 21 2 0 0 0 0.44122 1 42154 42154 40.449 6.2612 1 462120 + 39988 28419 26748 27267 46835 46835 1865 0.028685045569886825 MLASRKFKF 9 Unmodified _MLASRKFKF_ 0 0 0 nc|ENSG00000075790|Q9UHQ4-2|BCAP29 nc|ENSG00000075790|Q9UHQ4-2|BCAP29 nc|ENSG00000075790|Q9UHQ4-2|BCAP29 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.30078125 2 564.323337 1126.63212 0.28434 0.00016046 2.5776 0.0014546 2.8619 0.001615 564.3246633046593 61.609 0.18837 61.609 61.497 61.685 0 13 8 2 0 0 0 0.21242 1 34389 34389 5.2307 0 1 1133600 39989 16052 26749 27268 46836 46836 0.07386959113159719 MLAVDESWI 9 Unmodified _MLAVDESWI_ 0 0 0 REV__ENSG00000174898|ENST00000381624|CATSPERD REV__ENSG00000174898|ENST00000381624|CATSPERD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.758544921875 2 532.260068 1062.50558 0.26654 0.00014187 -2.985 -0.0015888 -2.7184 -0.0014469 532.2596719827848 62.459 0.49556 62.459 62.304 62.8 0 78 28 4 0 0 0 0.48152 1 34921 34921 8.5933 0.68312 1 9705000 + 39990 22825 26750 27269 46837 46837 -0.023170119026417524 MLAWINESL 9 Unmodified _MLAWINESL_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7763671875 2 538.775885 1075.53722 1.3263 0.00071457 3.7695 0.0020309 5.0957 0.0027455 538.7757678474894 98.352 0.16669 92.176 92.087 92.253 -6.1757 14 10 2 0 0 0 0.28023 1 65254 65254 26.341 8.2063 1 9677600 39991 1957 26751 27270 46838 46838 0.002469808513069438 MLAWLGRNI 9 Unmodified _MLAWLGRNI_ 0 0 0 REV__ENST00000502083.2_1_8:22865326-22865587:-|nuORF REV__ENST00000502083.2_1_8:22865326-22865587:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.30517578125 2 537.299862 1072.58517 0.9312 0.00050033 0.80182 0.00043082 1.733 0.00093115 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.052168 1 51483 51483 44.407 0 1 243440000 + 39992 28016 26752 27271 46839 46839 0.05178099561999261 MLCTKIAAYWT 11 Unmodified _MLCTKIAAYWT_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2203369140625 3 434.219127 1299.63555 -0.33943 -0.00014739 1.613 0.0007004 1.2736 0.00055301 434.22007299783274 19.764 0.15478 19.764 19.733 19.888 0 16 14 2 0 0 0 0.73114 1 9916 9916 1.3296 0.36737 1 529190 + 39993 21164 26753 27272 46840 46840 -0.0022815889517460164 MLDAGRAKY 9 Unmodified _MLDAGRAKY_ 0 0 0 REV__nc|ENSG00000131374|Q92609|TBC1D5 REV__nc|ENSG00000131374|Q92609|TBC1D5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7604370117188 2 512.765852 1023.51715 0.48105 0.00024667 -1.7082 -0.00087592 -1.2272 -0.00062925 512.7646449161196 44.613 0.56493 39.761 39.471 40.036 -4.852 56 43 2 0 0 0 0.12841 1 27095 27095 30.225 1.1432 1 19735000 + 39994 19785 26754 27273 46841 46841 0.006332299113410045 MLDCPILP 8 Unmodified _MLDCPILP_ 0 0 0 REV__ENSG00000100393|ENST00000263253|EP300 REV__ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.230224609375 2 451.229725 900.444896 0.51793 0.00023371 1.2262 0.0005533 1.7441 0.00078701 451.2302637871429 59.264 0.54581 59.264 58.877 59.423 0 40 23 3 0 0 0 0.80676 1 33065 33065 2.5775 0.73324 1 4416800 + 39995 18059 26755 27274 46842 46842 -0.009308204865760672 MLDGCLDSDP 10 Unmodified _MLDGCLDSDP_ 0 0 0 REV__ENSG00000160505|ENST00000301295|NLRP4 REV__ENSG00000160505|ENST00000301295|NLRP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.308837890625 2 533.215 1064.41545 0.22907 0.00012214 -1.8047 -0.00096229 -1.5756 -0.00084014 533.2141944249684 92.955 0.36826 86.779 86.626 86.995 -6.1757 28 23 2 0 0 0 0.23634 1 61570 61570 6.7232 2.7788 1 15268000 + 39996 21548 26756 27275 46843 46843 -0.11418429293371446 MLDGHLVPETL 11 Unmodified _MLDGHLVPETL_ 0 0 0 REV__ENSG00000187550|ENST00000413299|SBK2 REV__ENSG00000187550|ENST00000413299|SBK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2409057617188 2 612.818281 1223.62201 0.38871 0.00023821 -3.32 -0.0020346 -2.9313 -0.0017963 612.8169217056595 56.888 0.25813 56.888 56.763 57.022 0 20 10 3 0 0 0 0.2578 1 31610 31610 11.495 0 1 3864000 + 39997 23641 26757 27276 46844 46844 0.01914306597268478 MLDGSTQILF 10 Unmodified _MLDGSTQILF_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.894287109375 3 375.526725 1123.55835 1.5147 0.00056882 -1.5174 -0.00056982 -0.0026627 -9.9993E-07 375.52613275916315 88.762 0.33912 82.586 82.407 82.746 -6.1757 30 18 2 0 0 0 0.23227 1 58557 58557 9.544 2.9136 1 10670000 39998 6407 26758 27277 46845 46845 0.0015094616016995133 MLDGTGAL 8 Unmodified _MLDGTGAL_ 0 0 0 nc|ENSG00000090975|Q9BZ72-2|PITPNM2;nc|ENSG00000090975|Q9BZ72-3|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.8779602050781 2 389.194196 776.37384 1.2673 0.00049322 -0.18827 -7.3272E-05 1.079 0.00041995 389.1941468110836 35.049 0.50917 30.953 30.683 31.192 -4.0951 46 29 2 0 0 0 8.7369 1 20337 20337 20.871 1.4322 1 21181000 39999 16073 26759 27278 46846 46846 -0.02329197199742339 MLDLIDVYQ 9 Unmodified _MLDLIDVYQ_ 0 0 0 nc|ENSG00000185480|Q9NWS1-4|PARPBP;nc|ENSG00000185480|Q9NWS1-3|PARPBP;ENST00000541668.5_1_12:102514215-102548625:+|nuORF;ENST00000392914.3_1_12:102517666-102545686:+|nuORF;nc|ENSG00000185480|Q9NWS1-6|PARPBP;nc|ENSG00000185480|Q9NWS1-7|PARPBP;nc|ENSG00000185480|Q9NWS1-2|PARPBP;ENSG00000185480|ENST00000327680|PARPBP nc|ENSG00000185480|Q9NWS1-4|PARPBP nc|ENSG00000185480|Q9NWS1-4|PARPBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2830200195312 2 555.281 1108.54745 NaN NaN NaN NaN NaN NaN NaN 66.07 1 65.587 65.087 66.087 -0.48323 0 0 0 0.43483 1 36068 36068 18.146 3.3081 1 40000 9375 26760 27279 46847 46847 -0.0024845621412623586 MLDLVHDKR 9 Unmodified _MLDLVHDKR_ 0 0 0 REV__ENSG00000139629|ENST00000356317|GALNT6 REV__ENSG00000139629|ENST00000356317|GALNT6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.8043212890625 2 563.805508 1125.59646 0.99289 0.0005598 -1.6343 -0.00092145 -0.64145 -0.00036166 563.8032988673597 102.07 0.10689 95.892 95.833 95.939 -6.1757 6 4 2 0 0 0 0.20528 1 68528 68528 4.756 0 1 1840900 + 40001 20422 26761 27280 46848 46848 0.038688768654765227 MLDMSVPAV 9 2 Oxidation (M) _M(Oxidation (M))LDM(Oxidation (M))SVPAV_ M(1)LDM(1)SVPAV M(44)LDM(44)SVPAV 0 0 2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7319641113281 2 497.732828 993.451104 0.34091 0.00016968 -0.13306 -6.6226E-05 0.20786 0.00010346 497.73256578343955 45.701 0.1787 45.701 45.625 45.803 0 12 8 2 0 0 0 0.052168 1 24959 24959 44.407 29.825 1 2311500 40002 2082 26762 27281 46849 46849 355;356 -0.04588347045705632 MLDNFNLITF 10 Unmodified _MLDNFNLITF_ 0 0 0 REV__ENSG00000149313|ENST00000278618|AASDHPPT REV__ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8738708496094 3 409.874125 1226.60055 -0.71717 -0.00029395 -0.071113 -2.9147E-05 -0.78828 -0.0003231 409.87409421828966 56.077 0.23054 56.009 55.885 56.115 -0.068737 22 11 3 0 0 0 0.69126 1 30495 30495 3.8763 0 1 4977600 + 40003 20994 26763 27282 46850 46850 -0.003690784314812845 MLDPLEVHL 9 Oxidation (M) _M(Oxidation (M))LDPLEVHL_ M(1)LDPLEVHL M(85)LDPLEVHL 0 0 1 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.78125 2 541.781167 1081.54778 0.20987 0.0001137 0.061793 3.3478E-05 0.27167 0.00014718 541.7813568604167 69.716 0.39812 69.716 69.489 69.887 0 59 18 4 0 0 0 0.0090851 1 38856 38856 85.357 58.473 1 9112800 40004 8403 26764 27283 46851 46851 1428 0.01026963505751155 MLDPLEVHL 9 Oxidation (M) _M(Oxidation (M))LDPLEVHL_ M(1)LDPLEVHL M(78)LDPLEVHL 0 0 1 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.781005859375 2 541.781167 1081.54778 -0.13293 -7.202E-05 0.20048 0.00010862 0.06755 3.6597E-05 541.7813674654399 70.102 0.22271 69.623 69.515 69.738 -0.47903 21 13 2 0 0 0 0.010877 1 38333 38333 77.984 52.585 1 3211600 40005 8403 26764 27283 46852 46852 1428 0.01026963505751155 MLDPLEVHL 9 Unmodified _MLDPLEVHL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7836303710938 2 533.78371 1065.55287 1.0749 0.00057375 0.44318 0.00023656 1.5181 0.00081031 533.7837800987435 94.094 0.63135 87.919 87.504 88.135 -6.1757 55 36 2 0 0 0 0.010877 2 62121 62121;62253 77.984 49.497 1 19125000 40006 8403 26764 27284 46853;46854 46853 0.02271267368359986 MLDQTLLEL 9 Oxidation (M) _M(Oxidation (M))LDQTLLEL_ M(1)LDQTLLEL M(50)LDQTLLEL 0 0 1 nc|ENSG00000140416|P09493-2|TPM1;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-3|TPM1 nc|ENSG00000140416|P09493-2|TPM1 nc|ENSG00000140416|P09493-2|TPM1 MSMS AL20221201_MKP_PDAC_01 4 546.2866821289062 2 546.286282 1090.55801 NaN NaN NaN NaN NaN NaN NaN 90.031 1 83.856 83.356 84.356 -6.1757 0 0 0 0.074615 1 59441 59441 49.933 21.446 1 40007 16233 26765 27285 46855 46855 1811 0.01635526440304602 MLDYFDFIY 9 Unmodified _MLDYFDFIY_ 0 0 0 CON__P50448 CON__P50448 CON__P50448 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7750854492188 2 613.775551 1225.53655 0.060365 3.7051E-05 -2.6906 -0.0016514 -2.6302 -0.0016144 613.7739226385428 69.939 0.18056 69.46 69.314 69.494 -0.47903 13 7 2 0 0 0 0.53666 1 38220 38220 5.2307 0.90143 1 1239000 + 40008 179 26766 27286 46856 46856 -0.06719858588394345 MLEAPGPSDG 10 Unmodified _MLEAPGPSDG_ 0 0 0 ENSG00000081721|ENST00000367943|DUSP12 ENSG00000081721|ENST00000367943|DUSP12 ENSG00000081721|ENST00000367943|DUSP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4324340820312 1 973.429523 972.422247 0.21076 0.00020516 1.7575 0.0017108 1.9682 0.0019159 973.4314853162273 66.011 0.43947 66.011 65.864 66.304 0 24 21 2 0 0 0 0.66569 1 36816 36816 6.7232 0.96273 1 846800 40009 1328 26767 27287 46857 46857 -0.06506748350489033 MLEENLMLY 9 Unmodified _MLEENLMLY_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2753295898438 2 578.27486 1154.53517 0.2935 0.00016972 1.8929 0.0010946 2.1864 0.0012643 578.7781389084598 81.139 0.3629 81.139 80.963 81.326 0 41 17 3 0 0 0 0.51218 1 44994 44994 6.7232 3.1267 1 1220000 + 40010 29424 26768 27288 46858 46858 -0.03591815948811927 MLEENLMLY 9 Unmodified _MLEENLMLY_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2734985351562 2 578.27486 1154.53517 0.78168 0.00045203 -1.4844 -0.0008584 -0.70274 -0.00040638 578.2734290148561 81.659 0.34095 81.164 80.972 81.313 -0.4952 43 13 4 0 0 0 0.32871 1 44766 44766 15.847 3.3156 1 2299000 + 40011 29424 26768 27288 46859 46859 -0.03591815948811927 MLEENLMLY 9 Unmodified _MLEENLMLY_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2734375 2 578.27486 1154.53517 0.95571 0.00055266 -1.9919 -0.0011519 -1.0362 -0.00059923 578.2731172968022 90.028 0.642 83.852 83.615 84.257 -6.1757 61 36 3 0 0 0 0.087258 1 59662 59662 36.044 1.9418 1 12129000 + 40012 29424 26768 27288 46860 46860 -0.03591815948811927 MLEENLMLY 9 Unmodified _MLEENLMLY_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|59|2|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.27486 1154.53517 0.2935 0.00016972 1.8929 0.0010946 2.1864 0.0012643 578.7781389084598 81.139 0.3629 81.139 80.963 81.326 0 -0.012179 0.0030235 NaN 15.847 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1220000 + 40013 29424 26768 27288 -0.03591815948811927 MLEEPIQIL 9 Unmodified _MLEEPIQIL_ 0 0 0 REV__nc|ENSG00000198910|P32004-3|L1CAM REV__nc|ENSG00000198910|P32004-3|L1CAM MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.7562255859375 2 543.299193 1084.58383 0.39659 0.00021547 1.9694 0.00107 2.366 0.0012854 543.3001236248946 45.028 0.33498 40.176 39.975 40.31 -4.852 37 21 2 0 0 0 0.20727 1 27614 27614 7.9102 1.5561 1 17203000 + 40014 29900 26769 27289 46861 46861 0.044924206826181035 MLEGENAD 8 Unmodified _MLEGENAD_ 0 0 0 CON__A2VCT4 CON__A2VCT4 CON__A2VCT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.6812438964844 2 439.68165 877.348747 NaN NaN NaN NaN NaN NaN NaN 64.959 1 64.959 64.459 65.459 0 0 0 0 0.97444 1 36235 36235 2.8892 0 1 + 40015 138 26770 27290 46862 46862 -0.09483296792973306 MLEGLYSLSL 10 Unmodified _MLEGLYSLSL_ 0 0 0 REV__ENST00000326529.8_1_19:55861928-55864995:-|nuORF REV__ENST00000326529.8_1_19:55861928-55864995:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7993774414062 2 563.29665 1124.57875 0.75008 0.00042252 -2.3851 -0.0013435 -1.635 -0.00092102 563.7971110341135 72.129 0.5491 71.653 71.389 71.938 -0.47609 78 23 6 0 0 0 0.42068 1 39425 39425 20.454 2.3186 1 11564000 + 40016 25561 26771 27291 46863 46863 0.02144116819977171 MLEIDSGIIY 10 Unmodified _MLEIDSGIIY_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2935791015625 2 577.294107 1152.57366 0.8769 0.00050623 -1.3306 -0.00076817 -0.45374 -0.00026194 577.2933790649101 72.996 1.5719 66.82 66.583 68.154 -6.1757 163 78 3 0 0 0 0.074936 8 48317 47609;47724;47841;47963;48079;48190;48317;48438 52.268 19.296 1 62129000 + 40017 17712 26772 27292 46864;46865;46866;46867;46868;46869;46870;46871 46870 0.003478129573750266 MLELGAPAVHH 11 Unmodified _MLELGAPAVHH_ 0 0 0 REV__ENST00000443565.1_1_1:81107007-81112255:+|nuORF REV__ENST00000443565.1_1_1:81107007-81112255:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2055053710938 3 392.206098 1173.59646 NaN NaN NaN NaN NaN NaN NaN 14.976 1 14.976 14.476 15.476 0 0 0 0 0.94165 1 7171 7171 0.45452 0 1 + 40018 27114 26773 27293 46872 46872 0.016608768654805317 MLELLDMPA 9 Unmodified _MLELLDMPA_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.758544921875 2 516.758846 1031.50314 1.039 0.00053689 -1.3966 -0.0007217 -0.35763 -0.00018481 516.7581560542357 71.969 0.62128 65.793 65.502 66.123 -6.1757 51 33 2 0 0 0 0.2001 1 46941 46941 23.148 0 1 57975000 40019 3241 26774 27294 46873 46873 -0.011351836319590802 MLELLQHEHF 10 Unmodified _MLELLQHEHF_ 0 0 0 MED31|p.Y81H|1|0.21|ENSG00000108590|chr17:6644622-6644622|A/G|missense_variant MED31|p.Y81H|1|0.21|ENSG00000108590|chr17:6644622-6644622|A/G|missense_variant MED31|p.Y81H|1|0.21|ENSG00000108590|chr17:6644622-6644622|A/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8845825195312 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 32.518 1 32.518 32.018 33.018 0 0 0 0 0.98692 1 16993 16993 2.086 0 1 40020 15988 26775 27295 46874 46874 -0.0027487130862482445 MLEQMLIWRL 10 Unmodified _MLEQMLIWRL_ 0 0 0 ENST00000178640.9_1_15:67985880-67995726:+|nuORF ENST00000178640.9_1_15:67985880-67995726:+|nuORF ENST00000178640.9_1_15:67985880-67995726:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8618774414062 2 666.861969 1331.70938 -0.18036 -0.00012027 -0.0031346 -2.0903E-06 -0.18349 -0.00012236 666.8624735360703 76.834 0.41077 76.354 76.195 76.606 -0.47945 45 18 4 0 0 0 0.46514 1 42120 42120 18.146 1.0335 1 1615200 40021 10982 26776 27296 46875 46875 0.05679809267167002 MLESTTIL 8 Unmodified _MLESTTIL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2446594238281 2 454.243886 906.47322 0.39149 0.00017783 0.12446 5.6537E-05 0.51595 0.00023437 454.2440047963342 33.602 0.21772 33.631 33.503 33.72 0.028934 27 9 4 0 0 0 0.5953 1 17654 17654 26.341 0 1 5235000 + 40022 29815 26777 27297 46876 46876 0.016242006943457454 MLESTTIL 8 Unmodified _MLESTTIL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2449340820312 2 454.243886 906.47322 0.87196 0.00039608 0.95469 0.00043366 1.8267 0.00082975 454.24441643732075 38.237 0.47873 33.868 33.671 34.15 -4.3689 80 29 4 0 0 0 0.5284 1 22450 22450 32.117 5.7757 1 122620000 + 40023 29815 26777 27297 46877 46877 0.016242006943457454 MLESTTIL 8 Unmodified _MLESTTIL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2449035644531 2 454.243886 906.47322 0.99621 0.00045252 1.3135 0.00059665 2.3097 0.0010492 454.2445250200509 75.157 0.87122 68.982 68.344 69.215 -6.1757 81 46 3 0 0 0 0.5284 2 48908 48908;49049 32.117 5.7757 1 22713000 + 40024 29815 26777 27297 46878;46879 46878 0.016242006943457454 MLESTTIL 8 Unmodified _MLESTTIL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 454.243886 906.47322 0.39149 0.00017783 0.12446 5.6537E-05 0.51595 0.00023437 454.2440047963342 33.602 0.21772 33.631 33.503 33.72 0.028934 -0.1186 -0.00060051 NaN 32.117 27 9 4 NaN NaN NaN NaN 0 NaN NaN 0 5235000 + 40025 29815 26777 27297 0.016242006943457454 MLESTTIL 8 Unmodified _MLESTTIL_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 454.243886 906.47322 0.87196 0.00039608 0.95469 0.00043366 1.8267 0.00082975 454.24441643732075 38.237 0.47873 33.868 33.671 34.15 -4.3689 0.1186 0.00015375 NaN 32.117 80 29 4 NaN NaN NaN NaN 0 NaN NaN 0 122620000 + 40026 29815 26777 27297 0.016242006943457454 MLESYLHAKKY 11 Unmodified _MLESYLHAKKY_ 0 0 0 nc|ENSG00000142453|Q86X55-2|CARM1;nc|ENSG00000142453|Q86X55-1|CARM1;ENSG00000142453|ENST00000327064|CARM1 nc|ENSG00000142453|Q86X55-2|CARM1 nc|ENSG00000142453|Q86X55-2|CARM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.574462890625 3 461.576079 1381.70641 0.18624 8.5964E-05 -1.9814 -0.00091457 -1.7952 -0.00082861 461.57495763602986 34.735 0.1657 34.762 34.713 34.878 0.027401 14 7 2 0 0 0 0.66568 1 18347 18347 7.4771 1.9538 1 2748500 40027 5415 26778 27298 46880 46880 0.03082257414007472 MLEVSSSHDES 11 Unmodified _MLEVSSSHDES_ 0 0 0 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 ENSG00000132938|ENST00000612955|MTUS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5079040527344 3 407.50817 1219.50268 -0.22957 -9.355E-05 -0.43464 -0.00017712 -0.66421 -0.00027067 407.50794295929694 32.934 0.29176 32.775 32.596 32.888 -0.15918 17 11 2 0 0 0 0.68427 1 17186 17186 2.6312 0.88896 1 1381700 40028 4467 26779 27299 46881 46881 -0.09828931818105957 MLFDLSELK 9 Unmodified _MLFDLSELK_ 0 0 0 REV__ENST00000356970.6_2_1:109486615-109490255:-|nuORF REV__ENST00000356970.6_2_1:109486615-109490255:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2704467773438 2 548.291368 1094.56818 0.45012 0.0002468 2.4139 0.0013235 2.864 0.0015703 548.291882145759 99.63 0.14485 93.454 93.38 93.525 -6.1757 15 8 3 0 0 0 0.16785 1 66417 66417 16.942 0 1 15231000 + 40029 25833 26780 27300 46882 46882 0.024681341655195865 MLFDVPLLPLR 11 Unmodified _MLFDVPLLPLR_ 0 0 0 REV__ENSG00000145332|ENST00000273963|KLHL8 REV__ENSG00000145332|ENST00000273963|KLHL8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.3870239257812 2 657.386134 1312.75771 NaN NaN NaN NaN NaN NaN NaN 87.388 1 87.446 86.946 87.946 0.05822 0 0 0 0.9385 1 48587 48587 3.5965 0 1 + 40030 20767 26781 27301 46883 46883 0.11384626178710278 MLFGHPLLV 9 Unmodified _MLFGHPLLV_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7958374023438 2 513.793881 1025.57321 1.1386 0.00058499 2.2532 0.0011577 3.3918 0.0017427 513.7953733795573 97.991 0.14257 91.815 91.749 91.891 -6.1757 18 8 3 0 0 0 0.028712 1 64974 64974 56.048 35.595 1 29284000 40031 2029;13824 26782 27302 46884 46884 0.06144482818808683 MLFHMLSWL 9 Unmodified _MLFHMLSWL_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3018188476562 2 589.298473 1176.58239 1.1573 0.00068198 2.3645 0.0013934 3.5218 0.0020754 589.300254430832 96.379 0.23563 90.203 90.069 90.305 -6.1757 35 13 4 0 0 0 0.16226 1 63867 63867 26.884 2.8631 1 58546000 + 40032 17670 26783 27303 46885 46885 0.0011650811284198426 MLFIFLFSFLL 11 Unmodified _MLFIFLFSFLL_ 0 0 0 REV__ENSG00000177257|ENST00000318157|DEFB4B REV__ENSG00000177257|ENST00000318157|DEFB4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.265380859375 3 464.266294 1389.77705 0.013492 6.2637E-06 -0.50281 -0.00023344 -0.48932 -0.00022717 464.26588351997447 41.363 0.52165 41.361 41.096 41.618 -0.0017929 60 24 4 0 0 0 0.66568 1 22135 22135 7.4771 0.43998 1 12365000 + 40033 22591 26784 27304 46886 46886 0.09775582469637811 MLFPGSIAL 9 Oxidation (M) _M(Oxidation (M))LFPGSIAL_ M(1)LFPGSIAL M(64)LFPGSIAL 0 0 1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7616577148438 2 482.762246 963.50994 1.3816 0.00066699 -1.1938 -0.00057632 0.18781 9.0669E-05 482.7621814372995 96.606 0.79694 90.43 89.877 90.674 -6.1757 65 47 2 0 0 0 0.019979 3 63964 63645;63833;63964 63.563 25.412 1 13786000 40034 1957 26785 27305 46887;46888;46889 46889 333 0.026724973109139682 MLFPGSIAL 9 Unmodified _MLFPGSIAL_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5274047851562 1 948.522301 947.515025 0.71957 0.00068253 0.71347 0.00067675 1.433 0.0013593 948.5228323277616 100.4 0.15511 94.225 94.157 94.312 -6.1757 23 9 3 0 0 0 0.0094915 1 67100 67100 81.864 28.288 1 57861000 40035 1957 26785 27306 46890 46890 0.03916801173522799 MLFPGSIAL 9 Unmodified _MLFPGSIAL_ 0 0 0 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 ENSG00000101367|ENST00000375571|MAPRE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7662353515625 2 474.764789 947.515025 1.1451 0.00054365 0.26787 0.00012717 1.413 0.00067083 474.7648084716103 100.4 0.15511 94.222 94.157 94.312 -6.1757 24 9 3 0 0 0 0.078417 1 67103 67103 38.151 15.003 1 108500000 40036 1957 26785 27306 46891 46891 0.03916801173522799 MLFQMEQTL 9 Unmodified _MLFQMEQTL_ 0 0 0 REV__ENST00000261700.7_1_14:52470942-52471127:+|nuORF REV__ENST00000261700.7_1_14:52470942-52471127:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7759399414062 2 570.775028 1139.5355 0.81761 0.00046667 -0.7406 -0.00042272 0.077014 4.3958E-05 570.7747598008257 68.001 0.26877 67.518 67.346 67.615 -0.48219 21 12 2 0 0 0 0.37804 1 37110 37110 13.508 0 1 2322500 + 40037 25000 26786 27307 46892 46892 -0.02868396228950587 MLFRNEPI 8 Unmodified _MLFRNEPI_ 0 0 0 REV__ENSG00000138398|ENST00000260970|PPIG REV__ENSG00000138398|ENST00000260970|PPIG MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2709045410156 2 510.27077 1018.52699 1.2097 0.00061726 -0.36673 -0.00018713 0.84293 0.00043012 510.27055962560416 64.39 0.99992 58.214 57.918 58.917 -6.1757 150 54 4 0 0 0 0.72953 1 42117 42117 14.582 0 1 312170000 + 40038 20329 26787 27308 46893 46893 0.018464179167153816 MLGGTILLI 9 Unmodified _MLGGTILLI_ 0 0 0 REV__ENSG00000169490|ENST00000456397|TM2D2 REV__ENSG00000169490|ENST00000456397|TM2D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 930.5675659179688 1 930.569252 929.561975 1.4713 0.0013691 -3.3899 -0.0031546 -1.9187 -0.0017854 930.5654810381993 100.99 0.089531 94.818 94.78 94.869 -6.1757 7 4 2 0 0 0 0.012158 1 67700 67700 74.396 7.0524 1 6633300 + 40039 22402 26788 27309 46894 46894 0.09437660724688612 MLGKMEEHNHF 11 Unmodified _MLGKMEEHNHF_ 0 0 0 REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.21142578125 3 458.209402 1371.60638 -0.37854 -0.00017345 2.4505 0.0011228 2.0719 0.00094938 458.21084832386526 34.179 0.23178 33.988 33.843 34.074 -0.19132 21 8 3 0 0 0 0.72952 1 17837 17837 0.50596 0 1 1514700 + 40040 30038 26789 27310 46895 46895 -0.06456303191430379 MLGQQTET 8 Unmodified _MLGQQTET_ 0 0 0 REV__nc|ENSG00000132466|O75179-7|ANKRD17 REV__nc|ENSG00000132466|O75179-7|ANKRD17 MSMS AL20221201_MKP_PDAC_01 4 454.2139892578125 2 454.213117 906.411682 NaN NaN NaN NaN NaN NaN NaN 24.772 1 21.889 21.389 22.389 -2.8831 0 0 0 0.95201 1 13508 13508 10.183 3.8293 1 + 40041 19854 26790 27311 46896 46896 -0.04526731004921203 MLGTSSIFNS 10 Unmodified _MLGTSSIFNS_ 0 0 0 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 REV__nc|ENSG00000163157|Q9NZQ9-2|TMOD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7529907226562 2 528.755149 1055.49575 0.30057 0.00015893 -0.57145 -0.00030216 -0.27087 -0.00014323 528.7548663867498 55.356 0.84756 54.878 54.733 55.58 -0.47798 85 40 5 0 0 0 0.50944 1 30243 30243 15.847 2.8047 1 49290000 + 40042 21732 26791 27312 46897 46897 -0.029781999080114474 MLHLHHSCLC 10 Unmodified _MLHLHHSCLC_ 0 0 0 ENSG00000157399|ENST00000381134|ARSL ENSG00000157399|ENST00000381134|ARSL ENSG00000157399|ENST00000381134|ARSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5170593261719 3 398.517401 1192.53037 0.078182 3.1157E-05 -0.10207 -4.0677E-05 -0.023889 -9.5202E-06 398.51738805114337 23.858 0.25014 23.856 23.717 23.967 -0.0016766 16 11 2 0 0 0 0.63089 1 12180 12180 9.544 2.9136 1 5738700 40043 6515 26792 27313 46898 46898 -0.05818978572551714 MLHLKKARL 9 Unmodified _MLHLKKARL_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3544311523438 2 555.352428 1108.6903 1.7213 0.00095593 1.2272 0.00068154 2.9485 0.0016375 555.3529933888404 92.502 0.46867 92.532 92.336 92.805 0.030197 42 17 3 0 0 0 0.58466 1 51413 51413 2.3027 0 1 25573000 40044 8908 26793 27314 46899 46899 0.14030640758414847 MLHPHVPVC 9 Unmodified _MLHPHVPVC_ 0 0 0 ENST00000245304.4_1_13:98117480-98117684:+|nuORF ENST00000245304.4_1_13:98117480-98117684:+|nuORF ENST00000245304.4_1_13:98117480-98117684:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7560424804688 2 516.759515 1031.50448 1.039 0.00053689 -2.6906 -0.0013904 -1.6517 -0.00085351 516.7581560542357 71.969 0.62128 65.793 65.502 66.123 -6.1757 51 33 2 0 0 0 0.22317 1 47081 47081 20.871 3.9289 1 57975000 40045 11119 26794 27315 46900 46900 -0.010015047525257614 MLHQDHITF 9 Unmodified _MLHQDHITF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1887817382812 3 381.186814 1140.53861 1.1361 0.00043308 -0.88282 -0.00033652 0.25331 9.6558E-05 381.18710723333794 43.173 0.32526 38.408 38.225 38.55 -4.7648 57 22 4 0 0 0 0.12424 1 26132 26132 34.932 7.7088 1 37356000 40046 9907 26795 27316 46901 46901 -0.026033850599560537 MLHSVTLFL 9 Oxidation (M) _M(Oxidation (M))LHSVTLFL_ M(1)LHSVTLFL M(60)LHSVTLFL 0 0 1 ENST00000563829.5_1_15:75137426-75144629:-|nuORF;ENST00000567638.1_1_15:75140939-75144521:-|nuORF;ENSG00000140497|ENST00000268099|SCAMP2 ENST00000563829.5_1_15:75137426-75144629:-|nuORF ENST00000563829.5_1_15:75137426-75144629:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7946166992188 2 538.794078 1075.5736 0.27083 0.00014592 0.41759 0.00022499 0.68842 0.00037092 538.7943432391335 73.611 0.54733 73.655 73.337 73.884 0.043983 49 24 3 0 0 0 0.023164 2 40561 40459;40561 60.39 15.983 1 8264000 40047 15369 26796 27317 46902;46903 46903 1779 0.03883857747996444 MLHVWQGVSER 11 Unmodified _MLHVWQGVSER_ 0 0 0 ENSG00000235961|ENST00000421798|PNMA6A ENSG00000235961|ENST00000421798|PNMA6A ENSG00000235961|ENST00000421798|PNMA6A MSMS AL20221201_MKP_PDAC_01 4 671.3392333984375 2 671.340246 1340.66594 NaN NaN NaN NaN NaN NaN NaN 44.256 1 39.404 38.904 39.904 -4.852 0 0 0 0.79635 1 26995 26995 12.241 0.60036 1 40048 10642 26797 27318 46904 46904 0.009233358142409998 MLHWMEKSYV 10 Unmodified _MLHWMEKSYV_ 0 0 0 REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF REV__ENST00000576084.5_1_17:53029422-53031174:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.545166015625 3 441.878993 1322.61515 NaN NaN NaN NaN NaN NaN NaN 43.271 1 38.506 38.006 39.006 -4.7648 0 0 0 0.7417 1 26262 26262 8.9762 4.2603 1 + 40049 28984 26798 27319 46905 46905 -0.03325329554968448 MLIGFHFLF 9 Unmodified _MLIGFHFLF_ 0 0 0 REV__VWA7|p.P610L|1|0.23|ENSG00000204396|chr6:31767211-31767211|G/A|missense_variant REV__VWA7|p.P610L|1|0.23|ENSG00000204396|chr6:31767211-31767211|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2681884765625 2 562.801706 1123.58886 0.7502 0.00042222 3.2822 0.0018472 4.0324 0.0022695 562.8039739046271 64.043 0.27097 63.558 63.447 63.718 -0.48512 21 13 2 0 0 0 0.18941 1 34967 34967 14.582 2.0501 1 1597900 + 40050 30135 26799 27320 46906 46906 0.032007693358536926 MLIGMMQKY 9 Unmodified _MLIGMMQKY_ 0 0 0 REV__nc|ENSG00000128595|O43852-7|CALU REV__nc|ENSG00000128595|O43852-7|CALU MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.08056640625 2 557.776516 1113.53848 0.29246 0.00016313 -1.5554 -0.00086759 -1.263 -0.00070446 557.775627073045 15.578 0.054342 13.05 13.029 13.083 -2.5273 15 12 2 0 0 0 0.30562 1 8016 8016 16.942 0.79319 1 1472100 + 40051 29626 26800 27321 46907 46907 -0.013748443758004214 MLIIVCFI 8 Unmodified _MLIIVCFI_ 0 0 0 ENST00000600970.5_1_19:17327144-17330619:+|nuORF;ENSG00000053501|ENST00000263897|USE1 ENST00000600970.5_1_19:17327144-17330619:+|nuORF ENST00000600970.5_1_19:17327144-17330619:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7437438964844 2 476.273935 950.533318 0.95813 0.00045633 -1.7577 -0.00083714 -0.79955 -0.00038081 476.2725734531707 50.284 0.15919 49.892 49.772 49.931 -0.3923 12 7 2 0 0 0 8.7369 1 27005 27005 11.114 0 1 1312400 40052 746 26801 27322 46908 46908 0.0560721982387804 MLIKCKRKM 9 Unmodified _MLIKCKRKM_ 0 0 0 REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF REV__ENST00000299601.9_1_15:52254648-52258044:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2263793945312 3 384.225559 1149.65485 1.4938 0.00057396 0.26883 0.00010329 1.7626 0.00067725 384.22569774151094 87.06 0.74961 80.884 80.528 81.277 -6.1757 111 40 4 0 0 0 0.4887 1 57633 57633 8.1555 3.108 1 85024000 + 40053 25294 26802 27323 46909 46909 0.08600518914749955 MLILEQMHEH 10 Unmodified _MLILEQMHEH_ 0 0 0 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 REV__nc|ENSG00000103264|Q5XUX0-2|FBXO31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.5421752929688 3 427.542381 1279.60531 -0.12783 -5.4651E-05 0.939 0.00040146 0.81117 0.00034681 427.54250642019264 51.57 0.14881 51.146 51.07 51.219 -0.42463 11 7 2 0 0 0 0.65282 1 27814 27814 4.7159 0.59929 1 1828200 + 40054 18297 26803 27324 46910 46910 -0.023305175603354655 MLILEVEQF 9 Unmodified _MLILEVEQF_ 0 0 0 REV__ENSG00000167117|ENST00000450727|ANKRD40CL REV__ENSG00000167117|ENST00000450727|ANKRD40CL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2999877929688 2 561.299193 1120.58383 NaN NaN NaN NaN NaN NaN NaN 69.822 1 69.822 69.322 70.322 0 0 0 0 0.84369 1 38899 38899 2.3027 0.24298 1 + 40055 22184 26804 27325 46911 46911 0.028364206825926885 MLILFTEML 9 Unmodified _MLILFTEML_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.3198852539062 2 555.800514 1109.58648 0.72058 0.0004005 -0.43948 -0.00024426 0.2811 0.00015624 556.3015163973564 41.567 0.14231 36.959 36.857 36.999 -4.6079 15 9 2 0 0 0 0.19298 1 25001 25001 13.508 0 1 18045000 + 40056 24118 26805 27326 46912 46912 0.036065528159042515 MLILVLKKI 9 Unmodified _MLILVLKKI_ 0 0 0 ENST00000392396.7_2_3:195796375-195798346:-|nuORF ENST00000392396.7_2_3:195796375-195798346:-|nuORF ENST00000392396.7_2_3:195796375-195798346:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1070.73876953125 1 1070.73699 1069.72971 0.044327 4.7463E-05 -0.14917 -0.00015972 -0.10484 -0.00011226 1070.7381119836425 43.135 0.085442 42.825 42.777 42.863 -0.31039 5 3 2 0 0 0 0.61256 1 22959 22959 0.6015 0 1 4680200 40057 12672 26806 27327 46913 46913 0.1976334798928292 MLINGHCNEM 10 Unmodified _MLINGHCNEM_ 0 0 0 REV__ENST00000482160.5_1_X:109931866-110002981:-|nuORF REV__ENST00000482160.5_1_X:109931866-110002981:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.247314453125 2 581.246111 1160.47767 0.35359 0.00020552 0.86703 0.00050396 1.2206 0.00070948 581.2465892407471 96.868 0.29593 96.563 96.414 96.71 -0.30472 50 18 3 0 0 0 0.67459 1 52951 52951 5.7319 1.4026 1 1644100 + 40058 27715 26807 27328 46914 46914 -0.09614981426034319 MLISEEEIPF 10 Unmodified _MLISEEEIPF_ 0 0 0 nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 MSMS AL20221201_MKP_PDAC_01 4 403.2037963867188 3 403.202019 1206.58423 NaN NaN NaN NaN NaN NaN NaN 37.585 1 33.279 32.779 33.779 -4.3054 0 0 0 0.57388 1 22076 22076 22.658 7.7009 1 40059 9496 26808 27329 46915 46915 -0.010802043882222279 MLISEEEIPF 10 Unmodified _MLISEEEIPF_ 0 0 0 nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 nc|ENSG00000186660|Q96JP5-2|ZFP91 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.5540161132812 3 403.202019 1206.58423 1.6922 0.00068231 1.3608 0.00054868 3.053 0.001231 403.2031273350348 41.862 0.38176 37.254 37.03 37.412 -4.6079 80 23 4 0 0 0 0.23767 1 25116 25116 3.5871 0 1 15695000 40060 9496 26808 27329 46916 46916 -0.010802043882222279 MLISNEGHI 9 Unmodified _MLISNEGHI_ 0 0 0 nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7596740722656 2 507.257859 1012.50117 2.1253 0.0010781 0.49387 0.00025052 2.6191 0.0013286 507.25808399752395 94.247 0.51115 94.262 94.029 94.54 0.014252 29 18 2 0 0 0 0.46577 1 52451 52451 9.3474 0.75416 1 2218200 40061 3521 26809 27330 46917 46917 -0.004584763255365942 MLIYLDVPSE 10 Unmodified _MLIYLDVPSE_ 0 0 0 REV__ENST00000580542.5_1_17:73720783-73737087:+|nuORF REV__ENST00000580542.5_1_17:73720783-73737087:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8038940429688 2 590.301933 1178.58931 0.98368 0.00058067 -1.913 -0.0011292 -0.92928 -0.00054856 590.8024548925162 55.417 0.78034 49.496 49.157 49.937 -5.9211 146 47 4 0 0 0 0.42068 1 35209 35209 20.454 3.5113 1 115120000 + 40062 19855 26810 27331 46918 46918 0.007160994743799165 MLKLRQEL 8 Unmodified _MLKLRQEL_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8076782226562 2 515.807519 1029.60049 0.65171 0.00033615 -0.97763 -0.00050427 -0.32593 -0.00016812 515.8069079035007 77.81 1.5321 71.634 70.541 72.073 -6.1757 125 86 2 0 0 0 0.48669 3 50350 50231;50350;50506 36.044 6.9626 1 32986000 + 40063 21789 26811 27332 46919;46920;46921 46920 0.08686966359186954 MLKMFPKDFRF 11 Unmodified _MLKMFPKDFRF_ 0 0 0 ENST00000376681.7_1_17:46840236-46881289:-|nuORF;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6 ENST00000376681.7_1_17:46840236-46881289:-|nuORF ENST00000376681.7_1_17:46840236-46881289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.5923461914062 3 487.257804 1458.75158 0.98281 0.00047888 -0.057218 -2.788E-05 0.92559 0.000451 487.5917601614278 64.511 0.26895 64.5 64.377 64.646 -0.010529 22 13 2 0 0 0 0.69316 1 35334 35334 2.2527 0.79761 1 6439600 40064 8017 26812 27333 46922 46922 0.040557846755291393 MLKNATKGAF 10 Unmodified _MLKNATKGAF_ 0 0 0 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.8658447265625 3 360.867193 1079.57975 -0.30919 -0.00011157 -2.7326 -0.00098611 -3.0418 -0.0010977 360.8659469823465 31.557 0.1698 31.587 31.522 31.692 0.030106 17 7 3 0 0 0 0.60623 1 16552 16552 6.1918 0 1 1466300 + 40065 17827 26813 27334 46923 46923 0.043143759795157166 MLKNVNQKQL 10 Unmodified _MLKNVNQKQL_ 0 0 0 REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF REV__ENST00000523994.1_1_8:37620177-37624049:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.3473510742188 2 608.34754 1214.68053 NaN NaN NaN NaN NaN NaN NaN 51.918 1 51.918 51.418 52.418 0 0 0 0 0.97302 1 28705 28705 3.5965 1.2938 1 + 40066 20891 26814 27335 46924 46924 0.0817740796239832 MLKQGWTPR 9 Unmodified _MLKQGWTPR_ 0 0 0 ENST00000579314.5_1_17:61565977-61574724:+|nuORF;ENST00000578839.5_1_17:61562212-61574724:+|nuORF;nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE ENST00000579314.5_1_17:61565977-61574724:+|nuORF ENST00000579314.5_1_17:61565977-61574724:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.32470703125 2 558.802768 1115.59098 0.61148 0.0003417 -1.7352 -0.00096965 -1.1237 -0.00062795 558.8021637445007 73.687 0.28436 73.731 73.519 73.803 0.043983 15 12 2 0 0 0 0.19205 1 40520 40520 14.838 7.549 1 1260900 40067 6666 26815 27336 46925 46925 0.037811980736705664 MLKRELVRWWH 11 Unmodified _MLKRELVRWWH_ 0 0 0 ENST00000416284.7_1_12:62148739-62261127:-|nuORF ENST00000416284.7_1_12:62148739-62261127:-|nuORF ENST00000416284.7_1_12:62148739-62261127:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.6240234375 3 518.622246 1552.84491 NaN NaN NaN NaN NaN NaN NaN 88.474 1 88.527 88.027 89.027 0.053352 0 0 0 0.94144 1 49222 49222 0.50596 0 1 40068 13041 26816 27337 46926 46926 0.09059845173010217 MLKRKWRTF 9 Unmodified _MLKRKWRTF_ 0 0 0 ENST00000577944.5_2_17:80397520-80400257:+|nuORF ENST00000577944.5_2_17:80397520-80400257:+|nuORF ENST00000577944.5_2_17:80397520-80400257:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5809631347656 3 422.581499 1264.72267 NaN NaN NaN NaN NaN NaN NaN 69.522 1 69.522 69.022 70.022 0 0 0 0 0.86004 1 38734 38734 0.26902 0.1097 1 40069 15536 26817 27338 46927 46927 0.1008942816142735 MLLALQRPE 9 Unmodified _MLLALQRPE_ 0 0 0 nc|ENSG00000106077|Q8NFV4-4|ABHD11;ENSG00000106077|ENST00000222800|ABHD11 nc|ENSG00000106077|Q8NFV4-4|ABHD11 nc|ENSG00000106077|Q8NFV4-4|ABHD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5385437011719 3 357.539077 1069.5954 0.47173 0.00016866 -1.4253 -0.00050961 -0.95359 -0.00034095 357.87290397630335 42.74 0.38418 42.731 42.581 42.965 -0.0088196 43 17 3 0 0 0 0.59812 1 22968 22968 0.77653 0 1 18014000 40070 2397 26818 27339 46928 46928 0.06338662496591496 MLLDEDWYQR 10 Unmodified _MLLDEDWYQR_ 0 0 0 REV__ENSG00000171951|ENST00000305409|SCG2 REV__ENSG00000171951|ENST00000305409|SCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.8137817382812 2 684.81627 1367.61799 0.12729 8.7174E-05 -2.039 -0.0013963 -1.9117 -0.0013092 685.3167910888076 50.646 0.22758 50.646 50.477 50.704 0 20 10 3 0 0 0 0.6606 1 27917 27917 7.2892 0.56607 1 2768900 + 40071 22615 26819 27340 46929 46929 -0.051117828964606815 MLLDEYQERLF 11 Unmodified _MLLDEYQERLF_ 0 0 0 nc|ENSG00000170381|O15041-2|SEMA3E;ENSG00000170381|ENST00000643230|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E nc|ENSG00000170381|O15041-2|SEMA3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 728.8605346679688 2 728.860677 1455.7068 0.33341 0.00024301 -1.0122 -0.00073775 -0.67879 -0.00049474 729.3609398885568 71.439 0.37854 70.962 70.767 71.146 -0.47735 32 15 3 0 0 0 0.65846 1 39084 39084 8.1555 0 1 1109900 40072 7978 26820 27341 46930 46930 -0.002823676568141309 MLLDFIQHI 9 Oxidation (M) _M(Oxidation (M))LLDFIQHI_ M(1)LLDFIQHI M(83)LLDFIQHI 0 0 1 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.306884765625 2 573.30481 1144.59507 0.4746 0.00027209 2.5151 0.0014419 2.9897 0.001714 573.8081179837557 99.078 0.13213 92.902 92.807 92.94 -6.1757 11 7 2 0 0 0 0.0094097 1 65860 65860 82.529 32.596 1 20279000 40073 8479 26821 27342 46931 46931 1435 0.028552427767408517 MLLDRNITI 9 Unmodified _MLLDRNITI_ 0 0 0 REV__ENSG00000060339|ENST00000265872|CCAR1 REV__ENSG00000060339|ENST00000265872|CCAR1 MSMS AL20221201_MKP_PDAC_01 4 544.8447265625 2 544.810259 1087.60597 NaN NaN NaN NaN NaN NaN NaN 99.173 1 92.998 92.498 93.498 -6.1757 0 0 0 0.56988 1 65967 65967 19.257 5.7491 1 + 40074 17324 26822 27343 46932 46932 0.06566645150996919 MLLERNEEL 9 Oxidation (M) _M(Oxidation (M))LLERNEEL_ M(1)LLERNEEL M(56)LLERNEEL 0 0 1 ENST00000576826.1_1_16:3080666-3085497:-|nuORF;ENSG00000162069|ENST00000572449|BICDL2 ENST00000576826.1_1_16:3080666-3085497:-|nuORF ENST00000576826.1_1_16:3080666-3085497:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7984619140625 2 581.792263 1161.56997 0.18662 0.00010857 1.5581 0.00090649 1.7447 0.0010151 581.7935961080157 37.95 0.28342 37.95 37.786 38.069 0 30 13 3 0 0 0 0.029718 2 20163 20163;20188 55.503 11.096 1 2568600 40075 6833 26823 27344 46933;46934 46933 1182 -0.004348568164914468 MLLFSSYFYLQ 11 Unmodified _MLLFSSYFYLQ_ 0 0 0 nc|ENSG00000156869|Q6ZNA5-2|FRRS1 nc|ENSG00000156869|Q6ZNA5-2|FRRS1 nc|ENSG00000156869|Q6ZNA5-2|FRRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2376098632812 3 471.237063 1410.68936 0.53379 0.00025154 0.0076488 3.6044E-06 0.54144 0.00025515 471.23722296587715 86.006 0.25424 85.503 85.393 85.647 -0.50318 21 9 3 0 0 0 0.72952 1 47089 47089 0.50596 0 1 460220 40076 16295 26824 27345 46935 46935 0.0004433680821875896 MLLGPWGS 8 Unmodified _MLLGPWGS_ 0 0 0 REV__ENSG00000212864|ENST00000391553|RNF208 REV__ENSG00000212864|ENST00000391553|RNF208 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.435791015625 1 860.433486 859.42621 0.096603 8.312E-05 0.52162 0.00044882 0.61823 0.00053194 860.4340635962467 97.294 0.74128 97.294 96.913 97.654 0 79 35 3 0 0 0 0.80676 2 53594 53594;53894 2.5775 0 1 2417100 + 40077 24269 26825 27346 46936;46937 46936 -0.009126140661123827 MLLGSDIAGL 10 Unmodified _MLLGSDIAGL_ 0 0 0 ENST00000579735.1_1_18:1363209-1363299:-|nuORF ENST00000579735.1_1_18:1363209-1363299:-|nuORF ENST00000579735.1_1_18:1363209-1363299:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.2717590332031 2 495.270435 988.526318 NaN NaN NaN NaN NaN NaN NaN 43.116 1 38.351 37.851 38.851 -4.7648 0 0 0 0.81521 1 26141 26141 11.64 0.52583 1 40078 15551 26826 27347 46938 46938 0.03159578477016112 MLLGVVAVV 9 Unmodified _MLLGVVAVV_ 0 0 0 nc|ENSG00000170417|Q6ZP80-3|TMEM182;ENST00000486293.1_1_2:103380843-103460031:+|nuORF;nc|ENSG00000170417|Q6ZP80-2|TMEM182;ENST00000484094.1_1_2:103414278-103431424:+|nuORF;ENSG00000170417|ENST00000412401|TMEM182 nc|ENSG00000170417|Q6ZP80-3|TMEM182 nc|ENSG00000170417|Q6ZP80-3|TMEM182 MULTI-MSMS AL20221201_MKP_PDAC_01 4 900.5626220703125 1 900.558687 899.55141 0.30233 0.00027227 -0.2508 -0.00022586 0.051536 4.6411E-05 900.5580195838958 100.64 0.11031 94.466 94.404 94.515 -6.1757 12 7 2 0 0 0 0.047696 1 67330 67330 45.75 0 1 41316000 40079 7982 26827 27348 46939 46939 0.09761678070253765 MLLLAFMC 8 Unmodified _MLLLAFMC_ 0 0 0 ENST00000393084.5_2_11:108277827-108277863:-|nuORF ENST00000393084.5_2_11:108277827-108277863:-|nuORF ENST00000393084.5_2_11:108277827-108277863:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.234619140625 2 471.236495 940.458438 NaN NaN NaN NaN NaN NaN NaN 16.4 1 16.401 15.901 16.901 0.0010548 0 0 0 0.97444 1 8086 8086 0.79363 0 1 40080 12691 26828 27349 46940 46940 -0.014172859789823633 MLLLCYHTF 9 Unmodified _MLLLCYHTF_ 0 0 0 ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A;nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENST00000524442.1_1_1:51767070-51768798:-|nuORF ENSG00000085831|ENST00000680483|TTC39A ENSG00000085831|ENST00000680483|TTC39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2837524414062 2 570.782656 1139.55076 0.00063683 3.6349E-07 0.33383 0.00019054 0.33446 0.00019091 570.7827454324321 37.336 0.66603 37.065 36.774 37.44 -0.27133 53 27 4 0 0 0 0.48152 1 19590 19590 8.5933 1.8701 1 2553300 40081 1419 26829 27350 46941 46941 -0.013434846411200851 MLLLLEYI 8 Unmodified _MLLLLEYI_ 0 0 0 REV__ENSG00000203730|ENST00000367565|TEDDM1 REV__ENSG00000203730|ENST00000367565|TEDDM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7587585449219 2 504.295922 1006.57729 0.13241 6.6776E-05 2.3772 0.0011988 2.5096 0.0012656 504.2974724982431 41.836 0.23359 41.836 41.668 41.901 0 17 11 2 0 0 0 8.7369 1 22548 22548 5.7604 0 1 3164500 + 40082 24118 26830 27351 46942 46942 0.0742652752187496 MLLLLLLLLLL 11 Unmodified _MLLLLLLLLLL_ 0 0 0 nc|ENSG00000283654|A0A1B0GTW7-3|CIROP;nc|ENSG00000283654|A0A1B0GTW7-2|CIROP;ENSG00000283654|ENST00000637218|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP nc|ENSG00000283654|A0A1B0GTW7-3|CIROP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.953125 2 640.953121 1279.89169 NaN NaN NaN NaN NaN NaN NaN 14.312 1 14.32 13.82 14.82 0.0073986 0 0 0 0.9435 1 7090 7090 0 0 1 40083 10955 26831 27352 46943 46943 0.26293891951604564 MLLLLYKII 9 Unmodified _MLLLLYKII_ 0 0 0 ENST00000242057.8_1_7:17367431-17367461:+|nuORF ENST00000242057.8_1_7:17367431-17367461:+|nuORF ENST00000242057.8_1_7:17367431-17367461:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 560.29248046875 2 560.364139 1118.71372 NaN NaN NaN NaN NaN NaN NaN 102.12 1 95.944 95.444 96.444 -6.1757 0 0 0 0.54015 1 68537 68537 14.582 3.7578 1 40084 11108 26832 27353 46944 46944 0.15911641752404648 MLLLVLLRH 9 Unmodified _MLLLVLLRH_ 0 0 0 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.9070739746094 3 369.907212 1106.69981 -0.29335 -0.00010851 -1.0817 -0.00040013 -1.375 -0.00050864 369.9068595717724 36.705 0.75292 36.727 36.295 37.048 0.021545 87 34 3 0 0 0 0.55373 2 19476 19368;19476 4.1895 4.1895 1 31223000 + 40085 29598 26833 27354 46945;46946 46946 0.15072409043955304 MLLMWKALH 9 Unmodified _MLLMWKALH_ 0 0 0 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6;ENSG00000198488|ENST00000622824|B3GNT6;nc|ENSG00000198488|Q6ZMB0-3|B3GNT6 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 MSMS AL20221201_MKP_PDAC_01 4 571.8130493164062 2 571.81429 1141.61403 NaN NaN NaN NaN NaN NaN NaN 101.71 1 95.534 95.034 96.034 -6.1757 0 0 0 0.57317 1 68266 68266 13.508 1.8676 1 40086 16492 26834 27355 46947 46947 0.048885008667866714 MLLNERNYPF 10 Unmodified _MLLNERNYPF_ 0 0 0 ENST00000371380.7_1_10:95790651-95790705:+|nuORF ENST00000371380.7_1_10:95790651-95790705:+|nuORF ENST00000371380.7_1_10:95790651-95790705:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8848876953125 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 55.903 1 55.835 55.335 56.335 -0.068737 0 0 0 0.99897 1 30390 30390 0.77653 0 1 40087 12356 26835 27356 46948 46948 -0.0027487130862482445 MLLPGQHL 8 Unmodified _MLLPGQHL_ 0 0 0 REV__ENST00000396872.7_2_7:5342940-5343315:+|nuORF REV__ENST00000396872.7_2_7:5342940-5343315:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2259521484375 2 454.754756 907.494958 0.74365 0.00033818 2.0921 0.0009514 2.8358 0.0012896 454.7553567491584 80.799 0.18057 80.306 80.176 80.356 -0.49248 11 7 2 0 0 0 8.7369 1 44208 44208 0.69038 0 1 377820 + 40088 26518 26836 27357 46949 46949 0.037510502335976526 MLLQKMLRKLK 11 Unmodified _MLLQKMLRKLK_ 0 0 0 nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 701.4432983398438 2 701.44346 1400.87237 NaN NaN NaN NaN NaN NaN NaN 15.199 1 15.185 14.685 15.685 -0.014067 0 0 0 0.9435 1 7448 7448 0 0 1 40089 7938 26837 27358 46950 46950 0.18796612388996436 MLLQTMYSMY 10 Unmodified _MLLQTMYSMY_ 0 0 0 ENST00000295417.3_1_2:208627897-208628047:-|nuORF ENST00000295417.3_1_2:208627897-208628047:-|nuORF ENST00000295417.3_1_2:208627897-208628047:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.5292053222656 3 427.528972 1279.56509 -0.36922 -0.00015785 -0.12015 -5.1367E-05 -0.48937 -0.00020922 427.52903611639687 20.936 0.1158 20.936 20.868 20.984 0 64 27 3 0 0 0 0.70951 1 10534 10534 0.77653 0.078866 1 2337500 40090 11490 26838 27359 46951 46951 -0.06351200275116753 MLLREEIFRKW 11 Unmodified _MLLREEIFRKW_ 0 0 0 REV__ENSG00000163874|ENST00000373087|ZC3H12A REV__ENSG00000163874|ENST00000373087|ZC3H12A MSMS AL20221201_MKP_PDAC_01 4 507.6206359863281 3 507.61839 1519.83334 NaN NaN NaN NaN NaN NaN NaN 98.543 1 92.367 91.867 92.867 -6.1757 0 0 0 0.86919 1 65374 65374 8.7518 4.0359 1 + 40091 21828 26839 27360 46952 46952 0.0942160335898734 MLLREQKE 8 Unmodified _MLLREQKE_ 0 0 0 REV__ENSG00000164742|ENST00000297323|ADCY1 REV__ENSG00000164742|ENST00000297323|ADCY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1046.066284179688 1 1046.56629 1045.55902 0.038326 4.0111E-05 0.26701 0.00027944 0.30534 0.00031955 1046.5666586070768 61.7 0.10386 61.213 61.139 61.243 -0.48764 5 4 2 0 0 0 8.7369 1 33611 33611 0.79363 0 1 981170 + 40092 21944 26840 27361 46953 46953 0.038057855998886225 MLLSASNMLR 10 Unmodified _MLLSASNMLR_ 0 0 0 ENST00000466999.1_1_20:2640164-2640466:-|nuORF;ENST00000492240.5_1_20:2639399-2640466:-|nuORF;nc|ENSG00000101365|O43837-3|IDH3B;nc|ENSG00000101365|O43837-2|IDH3B;ENSG00000101365|ENST00000380843|IDH3B ENST00000466999.1_1_20:2640164-2640466:-|nuORF ENST00000466999.1_1_20:2640164-2640466:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3025512695312 2 568.301744 1134.58893 0.3945 0.0002242 -2.7171 -0.0015442 -2.3226 -0.00132 568.3016580383303 56.019 0.57288 50.098 49.878 50.451 -5.9211 66 33 3 0 0 0 0.35903 1 35794 35794 24.021 0.87215 1 45509000 40093 1956 26841 27362 46954 46954 0.02702401273563737 MLLSGDFDAVF 11 Unmodified _MLLSGDFDAVF_ 0 0 0 ENST00000425888.1_1_3:196294085-196295387:-|nuORF ENST00000425888.1_1_3:196294085-196295387:-|nuORF ENST00000425888.1_1_3:196294085-196295387:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.7896118164062 2 607.791732 1213.56891 0.45916 0.00027907 -3.0923 -0.0018795 -2.6332 -0.0016004 607.7902635069738 89.373 0.38725 88.872 88.688 89.076 -0.50171 34 16 3 0 0 0 0.6889 1 48824 48824 5.2969 1.7004 1 915370 40094 13170 26842 27363 46955 46955 -0.029330711854299807 MLLSVPLLL 9 Unmodified _MLLSVPLLL_ 0 0 0 ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.638427734375 1 998.631852 997.624575 0.87729 0.00087609 1.1996 0.0011979 2.0768 0.002074 998.633194112307 102.34 0.071831 96.167 96.132 96.204 -6.1757 10 5 2 0 0 0 0.019979 1 68680 68680 63.563 9.9873 1 4931200 40095 8819 26843 27364 46956 46956 0.12566806792892748 MLLSVPLLL 9 Unmodified _MLLSVPLLL_ 0 0 0 ENSG00000179218|ENST00000316448|CALR;ENST00000590325.1_1_19:13049472-13051084:+|nuORF;ENST00000587486.6_1_19:13049472-13049670:+|nuORF ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8204650878906 2 499.819564 997.624575 1.1372 0.0005684 1.0598 0.00052973 2.197 0.0010981 499.81986327565335 102.36 0.10374 96.182 96.114 96.218 -6.1757 13 7 2 0 0 0 0.012158 1 68696 68696 74.396 14.601 1 6951200 40096 8819 26843 27364 46957 46957 0.12566806792892748 MLLVTESALP 10 Unmodified _MLLVTESALP_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3053588867188 2 537.299193 1072.58383 0.9312 0.00050033 2.0464 0.0010995 2.9776 0.0015999 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.40046 1 52166 52166 32.305 3.2239 1 243440000 + 40097 22295 26844 27365 46958 46958 0.050444206825886795 MLLYSPTLLM 10 Unmodified _MLLYSPTLLM_ 0 0 0 ENST00000359943.7_1_7:120990008-120990050:-|nuORF ENST00000359943.7_1_7:120990008-120990050:-|nuORF ENST00000359943.7_1_7:120990008-120990050:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3179321289062 2 591.319071 1180.62359 0.67222 0.0003975 -4.4789 -0.0026485 -3.8067 -0.002251 591.3163853247983 102.06 0.14372 95.889 95.814 95.957 -6.1757 10 6 3 0 0 0 0.48834 1 68522 68522 16.942 0 1 4338400 40098 12154 26845 27366 46959 46959 0.040502243616401756 MLLYWSIF 8 Unmodified _MLLYWSIF_ 0 0 0 nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENSG00000137266|ENST00000406686|SLC22A23 nc|ENSG00000137266|A1A5C7-2|SLC22A23 nc|ENSG00000137266|A1A5C7-2|SLC22A23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.1903991699219 3 358.189385 1071.54633 NaN NaN NaN NaN NaN NaN NaN 23.559 1 23.58 23.08 24.08 0.021185 0 0 0 0.97444 1 12137 12137 1.8442 0.6509 1 40099 4919 26846 27367 46960 46960 0.013413742076181734 MLMDRIQF 8 Unmodified _MLMDRIQF_ 0 0 0 REV__nc|ENSG00000106976|Q05193-5|DNM1 REV__nc|ENSG00000106976|Q05193-5|DNM1 MSMS AL20221201_MKP_PDAC_01 4 351.845947265625 3 351.845512 1052.51471 NaN NaN NaN NaN NaN NaN NaN 4.269 1 1.787 1.287 2.287 -2.482 0 0 0 0.97444 1 2165 2165 0.40072 0 1 + 40100 18543 26847 27368 46961 46961 -0.00944941817988365 MLNGPVRRQRR 11 Unmodified _MLNGPVRRQRR_ 0 0 0 REV__ENSG00000187730|ENST00000378585|GABRD REV__ENSG00000187730|ENST00000378585|GABRD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2820434570312 3 461.601844 1381.7837 0.98922 0.00045662 1.5761 0.00072751 2.5653 0.0011841 461.60251128653584 80.943 0.29714 81.003 80.892 81.19 0.059929 21 11 2 0 0 0 0.30551 1 44737 44737 2.6312 0.37851 1 1819900 + 40101 23654 26848 27369 46962 46962 0.10808333193563158 MLNQKHIL 8 Unmodified _MLNQKHIL_ 0 0 0 ENST00000400075.3_1_21:27124380-27124422:+|nuORF ENST00000400075.3_1_21:27124380-27124422:+|nuORF ENST00000400075.3_1_21:27124380-27124422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7840881347656 2 498.786587 995.558621 0.18722 9.3384E-05 -3.6901 -0.0018406 -3.5028 -0.0017472 498.78422370178447 80.379 0.33498 80.436 80.293 80.628 0.057587 25 15 2 0 0 0 0.71616 1 44436 44436 15.768 2.2603 1 11528000 40102 12869 26849 27370 46963 46963 0.06066410670666755 MLNVDLLHHI 10 Unmodified _MLNVDLLHHI_ 0 0 0 ENST00000443950.6_1_10:43881724-43881811:-|nuORF ENST00000443950.6_1_10:43881724-43881811:-|nuORF ENST00000443950.6_1_10:43881724-43881811:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2235717773438 3 402.221748 1203.64341 0.85496 0.00034389 1.8574 0.00074708 2.7123 0.001091 402.22315205014473 49.792 0.21977 49.743 49.626 49.846 -0.048824 22 10 3 0 0 0 0.66569 1 26940 26940 3.5871 0.59182 1 1929400 40103 13433 26850 27371 46964 46964 0.049737364166276166 MLPEILIIH 9 Unmodified _MLPEILIIH_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000467378.1_1_X:47106498-47106892:+|nuORF;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8223266601562 2 539.820095 1077.62564 0.45978 0.0002482 -0.65429 -0.0003532 -0.19452 -0.000105 539.8197821139698 100.8 0.10628 100.75 100.68 100.79 -0.04216 11 3 4 0 0 0 0.28047 1 55998 55998 18.135 3.5533 1 16979000 40104 2029;13824 26851 27372 46965 46965 0.08993021161791148 MLPELLSWG 9 Unmodified _MLPELLSWG_ 0 0 0 REV__CEPT1|p.R61W|1|0.21|ENSG00000134255|chr1:111147895-111147895|C/T|missense_variant REV__CEPT1|p.R61W|1|0.21|ENSG00000134255|chr1:111147895-111147895|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 523.2719116210938 2 523.272978 1044.5314 NaN NaN NaN NaN NaN NaN NaN 51.149 1 45.5 45 46 -5.649 0 0 0 0.46757 1 32163 32163 16.942 1.6938 1 + 40105 16761 26852 27373 46966 46966 0.01091882339642325 MLPFFNHIC 9 Unmodified _MLPFFNHIC_ 0 0 0 ENST00000257435.11_1_5:111091482-111092910:-|nuORF;ENST00000507742.5_1_5:111066620-111092910:-|nuORF ENST00000257435.11_1_5:111091482-111092910:-|nuORF ENST00000257435.11_1_5:111091482-111092910:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1799621582031 3 374.513874 1120.51979 0.29041 0.00010876 0.092265 3.4555E-05 0.38268 0.00014332 374.51405443815014 39.126 1.7157 39.137 38.941 40.657 0.011452 115 81 2 0 0 0 0.203 1 21525 21525 2.9952 1.9238 1 3647800 40106 11191 26853 27374 46967 46967 -0.03564637955332728 MLPIHQDE 8 Unmodified _MLPIHQDE_ 0 0 0 ENSG00000186675|ENST00000373359|MAGEE2 ENSG00000186675|ENST00000373359|MAGEE2 ENSG00000186675|ENST00000373359|MAGEE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7357788085938 2 491.73676 981.458967 0.5261 0.0002587 -1.4089 -0.00069281 -0.88281 -0.00043411 491.7359137330715 78.962 0.99966 78.476 78.012 79.012 -0.48596 102 41 3 0 0 0 0.77186 1 43301 43301 10.824 0 1 1918100 40107 9498 26854 27375 46968 46968 -0.03250451733936188 MLPSIYKWMYY 11 Unmodified _MLPSIYKWMYY_ 0 0 0 REV__ENSG00000072041|ENST00000266682|SLC6A15 REV__ENSG00000072041|ENST00000266682|SLC6A15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.9112243652344 3 498.910182 1493.70872 -0.094263 -4.7029E-05 2.0241 0.0010099 1.9299 0.00096283 498.9112192045243 23.696 0.18238 23.696 23.588 23.771 0 12 9 2 0 0 0 0.74429 1 12058 12058 0.094841 0 1 828240 + 40108 17504 26855 27376 46969 46969 -0.018390301725503377 MLPSLPLC 8 Unmodified _MLPSLPLC_ 0 0 0 ENST00000285021.11_1_3:14186762-14186933:-|nuORF ENST00000285021.11_1_3:14186762-14186933:-|nuORF ENST00000285021.11_1_3:14186762-14186933:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2330627441406 2 437.232267 872.449982 0.54281 0.00023734 1.8802 0.00082206 2.423 0.0010594 437.23296996599 48.426 0.43502 48.383 48.239 48.674 -0.04369 38 21 2 0 0 0 0.80143 1 26123 26123 5.7604 1.0044 1 2726000 40109 11438 26856 27377 46970 46970 0.008654833760260772 MLPSLPLC 8 Unmodified _MLPSLPLC_ 0 0 0 ENST00000285021.11_1_3:14186762-14186933:-|nuORF ENST00000285021.11_1_3:14186762-14186933:-|nuORF ENST00000285021.11_1_3:14186762-14186933:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 437.232267 872.449982 0.39126 0.00017107 3.1304 0.0013687 3.5216 0.0015398 437.23338080292285 48.443 0.19738 48.072 47.945 48.143 -0.37172 -0.12107 0.00091459 NaN 5.7604 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1851700 40110 11438 26856 27377 0.008654833760260772 MLQEWLDE 8 Unmodified _MLQEWLDE_ 0 0 0 CON__P41361 CON__P41361 CON__P41361 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2393798828125 2 532.241875 1062.4692 NaN NaN NaN NaN NaN NaN NaN 68.755 1 68.274 67.774 68.774 -0.48071 0 0 0 0.94494 1 37581 37581 11.64 1.5664 1 + 40111 178 26857 27378 46971 46971 -0.059538887993767275 MLQLQHDAF 9 Unmodified _MLQLQHDAF_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 ENSG00000164438|ENST00000296921|TLX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7706909179688 2 551.771134 1101.52771 0.015456 8.528E-06 -1.183 -0.00065277 -1.1676 -0.00064424 551.7705902279973 71.103 0.21681 71.103 70.997 71.214 0 14 8 2 0 0 0 0.49272 1 39619 39619 7.9102 0.62092 1 856650 40112 7195 26858 27379 46972 46972 -0.018987874342428768 MLQSSSQLSH 10 Unmodified _MLQSSSQLSH_ 0 0 0 ENSG00000184611|ENST00000332142|KCNH7;nc|ENSG00000184611|Q9NS40-2|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 ENSG00000184611|ENST00000332142|KCNH7 MSMS AL20221201_MKP_PDAC_01 4 559.2697143554688 2 559.268955 1116.52336 NaN NaN NaN NaN NaN NaN NaN 79.683 1 73.507 73.007 74.007 -6.1757 0 0 0 0.85122 1 52234 52234 10.074 0.6908 1 40113 9277 26859 27380 46973 46973 -0.030242966477771915 MLRFKKTIF 9 Unmodified _MLRFKKTIF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2228698730469 3 395.23885 1182.69472 -0.083666 -3.3068E-05 -0.15505 -6.1283E-05 -0.23872 -9.4351E-05 395.2388145804188 16.86 0.14063 16.865 16.787 16.927 0.0050564 18 12 2 0 0 0 0.2188 1 8444 8444 1.0715 0.10919 1 708930 40114 1447 26860 27381 46974 46974 0.11068105181334431 MLRKKQEHM 9 Unmodified _MLRKKQEHM_ 0 0 0 ENST00000402768.1_1_6:139935577-139935790:-|nuORF ENST00000402768.1_1_6:139935577-139935790:-|nuORF ENST00000402768.1_1_6:139935577-139935790:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8824462890625 3 400.882849 1199.62672 NaN NaN NaN NaN NaN NaN NaN 14.747 1 14.747 14.247 15.247 0 0 0 0 0.85798 1 7038 7038 0.23584 0 1 40115 12895 26861 27382 46975 46975 0.03488912259012977 MLRKLLLKM 9 Unmodified _MLRKLLLKM_ 0 0 0 ENST00000370768.6_1_1:78432774-78435614:-|nuORF ENST00000370768.6_1_1:78432774-78435614:-|nuORF ENST00000370768.6_1_1:78432774-78435614:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.36669921875 2 573.36669 1144.71883 -0.58118 -0.00033323 0.051327 2.9429E-05 -0.52985 -0.0003038 573.3666586061004 102.95 0.29233 102.9 102.78 103.07 -0.04792 24 11 3 0 0 0 0.62242 1 57177 57177 0 0 1 1460700 40116 12343 26862 27383 46976 46976 0.15225622343359646 MLRNERQF 8 Unmodified _MLRNERQF_ 0 0 0 nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000263956|Q86T75-2|NBPF11;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000268043|ENST00000698835|NBPF12 nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12 ENSG00000268043|ENST00000698835|NBPF12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8016967773438 2 547.2822 1092.54985 0.3196 0.00017491 -0.59117 -0.00032353 -0.27157 -0.00014862 547.2819647963528 63 0.52027 62.514 62.385 62.905 -0.48617 43 24 2 0 0 0 8.7369 1 34545 34545 13.508 3.3245 1 23682000 40117 6918;10870;10547 26863 27384 46977 46977 0.007274370341974645 MLRRHCHF 8 Unmodified _MLRRHCHF_ 0 0 0 ENST00000515260.2_2_7:107269304-107269751:+|nuORF ENST00000515260.2_2_7:107269304-107269751:+|nuORF ENST00000515260.2_2_7:107269304-107269751:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1847839355469 3 367.184862 1098.53276 NaN NaN NaN NaN NaN NaN NaN 17.501 1 17.501 17.001 18.001 0 0 0 0 0.97444 1 8629 8629 0 0 1 40118 14665 26864 27385 46978 46978 -0.012567620526169776 MLRYWGEI 8 Unmodified _MLRYWGEI_ 0 0 0 nc|ENSG00000119760|O94864-2|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2683715820312 2 534.27077 1066.52699 0.39824 0.00021277 -1.772 -0.00094675 -1.3738 -0.00073398 534.2694412255698 79.088 0.3173 78.602 78.436 78.754 -0.48595 30 13 3 0 0 0 0.74163 1 43330 43330 13.508 0.97634 1 1470500 40119 16155 26865 27386 46979 46979 -0.0036158208329197805 MLSAVIARLV 10 Unmodified _MLSAVIARLV_ 0 0 0 ENST00000549920.5_2_19:49122492-49122792:-|nuORF ENST00000549920.5_2_19:49122492-49122792:-|nuORF ENST00000549920.5_2_19:49122492-49122792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.22216796875 3 358.223088 1071.64744 NaN NaN NaN NaN NaN NaN NaN 34.041 1 34.041 33.541 34.541 0 0 0 0 0.92825 1 17902 17902 3.5871 0 1 40120 15155 26866 27387 46980 46980 0.11447825910317988 MLSDEMET 8 Unmodified _MLSDEMET_ 0 0 0 ENST00000561116.5_1_15:49868913-49903415:-|nuORF;nc|ENSG00000166262|Q96M60-2|FAM227B;ENSG00000166262|ENST00000299338|FAM227B ENST00000561116.5_1_15:49868913-49903415:-|nuORF ENST00000561116.5_1_15:49868913-49903415:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.1910400390625 2 478.190993 954.367434 0.57942 0.00027707 -0.41208 -0.00019705 0.16734 8.0021E-05 478.19093932364854 88.104 0.3522 87.6 87.421 87.774 -0.50423 23 14 2 0 0 0 0.80975 1 48245 48245 0.79363 0 1 582120 40121 7460 26867 27388 46981 46981 -0.11157503213428299 MLSDWYTML 9 Unmodified _MLSDWYTML_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1771240234375 3 387.176928 1158.50895 -0.75626 -0.0002928 0.68802 0.00026638 -0.068238 -2.642E-05 387.17720896576736 30.153 0.22684 30.153 30.036 30.263 0 24 10 3 0 0 0 0.49272 1 15635 15635 4.897 0.36815 1 8438700 40122 718 26868 27389 46982 46982 -0.0639608512030918 MLSEENMLLL 10 Unmodified _MLSEENMLLL_ 0 0 0 REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF REV__ENST00000421367.6_1_10:101911593-101911725:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.2612915039062 2 596.801242 1191.58793 -0.35252 -0.00021038 2.2879 0.0013654 1.9354 0.0011551 596.802817163518 98.837 0.32095 92.661 92.52 92.841 -6.1757 32 23 2 0 0 0 0.22327 1 65749 65749 13.906 0 1 45397000 + 40123 26843 26869 27390 46983 46983 -0.00019857886013596726 MLSEKELCH 9 Unmodified _MLSEKELCH_ 0 0 0 ENST00000528300.5_1_14:50458977-50469505:-|nuORF ENST00000528300.5_1_14:50458977-50469505:-|nuORF ENST00000528300.5_1_14:50458977-50469505:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.76806640625 2 545.257002 1088.49945 0.60654 0.00033072 -3.6858 -0.0020097 -3.0793 -0.001679 545.2544461277082 81.051 0.22536 80.559 80.356 80.582 -0.49247 17 9 2 0 0 0 0.20727 1 44295 44295 7.9102 1.187 1 1605800 40124 14854 26870 27391 46984 46984 -0.041258534058215446 MLSENPKTD 9 Unmodified _MLSENPKTD_ 0 0 0 ENST00000457174.1_2_7:4917786-4921787:-|nuORF ENST00000457174.1_2_7:4917786-4921787:-|nuORF ENST00000457174.1_2_7:4917786-4921787:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7694702148438 2 517.744782 1033.47501 0.3817 0.00019762 0.79038 0.00040922 1.1721 0.00060684 518.2466116770987 63.008 0.23649 62.521 62.405 62.642 -0.48617 17 11 2 0 0 0 0.19205 1 34313 34313 14.838 2.3067 1 1991600 40125 13606 26871 27392 46985 46985 -0.04038790287700067 MLSHPFCDF 9 Unmodified _MLSHPFCDF_ 0 0 0 ENST00000501695.3_1_5:147758402-147763328:-|nuORF ENST00000501695.3_1_5:147758402-147763328:-|nuORF ENST00000501695.3_1_5:147758402-147763328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.227783203125 2 548.733163 1095.45177 -0.22984 -0.00012612 0.42078 0.00023089 0.19093 0.00010477 548.7333231306047 25.885 0.53183 25.885 25.613 26.145 0 93 24 5 0 0 0 0.49272 1 13195 13195 7.9102 0 1 62667000 40126 14447 26872 27393 46986 46986 -0.09213507606023086 MLSKDLNDM 9 Unmodified _MLSKDLNDM_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45;nc|ENSG00000093009|O75419-2|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.2796020507812 2 533.74901 1065.48347 0.37632 0.00020086 3.1947 0.0017052 3.571 0.001906 533.7495804987774 65.806 0.14902 59.63 59.51 59.659 -6.1757 11 8 2 0 0 0 0.18521 1 42704 42704 11.64 0 1 18287000 40127 1628 26873 27394 46987 46987 -0.046655596427171986 MLSPDPREL 9 Unmodified _MLSPDPREL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1;ENST00000569764.1_16:18870876-18872178:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7980346679688 2 529.270967 1056.52738 0.7494 0.00039664 0.65955 0.00034908 1.4089 0.00074572 529.2713892980286 90.86 0.31996 90.896 90.692 91.012 0.036507 19 11 2 0 0 0 0.18521 1 50523 50523 16.942 5.302 1 8939600 40128 6500 26874 27395 46988 46988 0.0013779284590782481 MLSPSSLFS 9 Unmodified _MLSPSSLFS_ 0 0 0 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7400512695312 2 484.741511 967.468469 0.37029 0.00017949 -1.3654 -0.00066188 -0.99514 -0.00048239 484.74049582645057 73.348 0.38154 73.392 73.23 73.612 0.043983 45 16 4 0 0 0 0.087258 1 40382 40382 36.044 3.9272 1 9504300 40129 1979 26875 27396 46989 46989 -0.016566834484024184 MLSQDAPTV 9 Unmodified _MLSQDAPTV_ 0 0 0 ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MSMS AL20221201_MKP_PDAC_01 4 481.2364501953125 2 481.236593 960.458632 NaN NaN NaN NaN NaN NaN NaN 47.644 1 42.41 41.91 42.91 -5.2339 0 0 0 0.098163 1 29589 29589 43.858 11.553 1 40130 2192 26876 27397 46990 46990 -0.023178714537948508 MLSSNIPDGF 10 Unmodified _MLSSNIPDGF_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7952270507812 2 540.755149 1079.49575 -0.19581 -0.00010589 -2.2409 -0.0012118 -2.4367 -0.0013176 540.7538959976733 39.349 0.29238 39.062 38.961 39.254 -0.28687 21 13 2 0 0 0 0.20962 2 20699 20699;20767 32.786 15.843 1 1483800 40131 6095 26877 27398 46991;46992 46991 -0.040821999080208116 MLSSSQRF 8 Unmodified _MLSSSQRF_ 0 0 0 REV__ENSG00000234284|ENST00000444149|ZNF879 REV__ENSG00000234284|ENST00000444149|ZNF879 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 477.73974609375 2 478.236927 954.459301 0.88053 0.0004211 1.6161 0.00077288 2.4966 0.001194 478.23828823205497 35.19 0.61601 31.094 30.7 31.316 -4.0951 54 36 2 0 0 0 8.7369 1 20344 20344 34.102 10.954 1 23031000 + 40132 24416 26878 27399 46993 46993 -0.01975032014070166 MLSTMHLIT 9 Oxidation (M) _MLSTM(Oxidation (M))HLIT_ M(0.025)LSTM(0.975)HLIT M(-16)LSTM(16)HLIT 0 0 1 ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7669677734375 2 531.769745 1061.52494 0.30886 0.00016424 -3.5907 -0.0019094 -3.2818 -0.0017452 531.766498488941 65.679 0.74148 65.679 65.394 66.135 0 63 34 3 0 0 0 0.052168 1 36567 36567 44.407 15.92 2 4233900 40133 12376 26879 27400 46994 46994 1752 -0.003363788833894432 MLSTMHLIT 9 Oxidation (M) _MLSTM(Oxidation (M))HLIT_ 0 0 1 ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.769745 1061.52494 0.017826 9.4796E-06 -5.8627 -0.0031176 -5.8449 -0.0031081 531.7665723385192 66.043 0.44566 65.56 65.361 65.807 -0.48323 -0.056399 -8.4147E-05 NaN 44.407 65 22 4 NaN NaN NaN NaN 0 NaN NaN 0 40133000 40134 12376 26879 27400 1752 -0.003363788833894432 MLSTMHLIT 9 Oxidation (M) _MLSTM(Oxidation (M))HLIT_ 0 0 1 ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF ENST00000372209.3_1_1:45241798-45243366:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.769745 1061.52494 0.79206 0.0004212 -6.0755 -0.0032308 -5.2834 -0.0028096 531.7662922733856 65.61 0.30733 65.61 65.431 65.738 7.6294E-06 -0.0059695 -0.00031044 NaN 44.407 28 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5972800 40135 12376 26879 27400 1752 -0.003363788833894432 MLSTTLEA 8 Unmodified _MLSTTLEA_ 0 0 0 REV__ENSG00000104941|ENST00000221538|RSPH6A REV__ENSG00000104941|ENST00000221538|RSPH6A MSMS AL20221201_MKP_PDAC_01 4 432.7824401855469 2 433.220411 864.426269 NaN NaN NaN NaN NaN NaN NaN 92.806 1 86.631 86.131 87.131 -6.1757 0 0 0 0.95973 1 61383 61383 8.5933 0 1 + 40136 18389 26880 27401 46995 46995 -0.011366588567852887 MLTAGYAERER 11 Unmodified _MLTAGYAERER_ 0 0 0 nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2;nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8853149414062 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 51.185 1 51.185 50.685 51.685 0 0 0 0 0.75507 1 28253 28253 14.218 5.2419 1 40137 6046 26881 27402 46996 46996 -0.006769608023205365 MLTAGYAERER 11 Unmodified _MLTAGYAERER_ 0 0 0 nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2;nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 nc|ENSG00000149970|Q8WXI2-5|CNKSR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8848876953125 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 51.754 1 51.32 50.82 51.82 -0.43367 0 0 0 0.90499 1 27923 27923 7.0371 1.9896 1 40138 6046 26881 27402 46997 46997 -0.006769608023205365 MLTENLFF 8 Unmodified _MLTENLFF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7845458984375 2 507.751879 1013.4892 1.1835 0.00060091 -2.4344 -0.0012361 -1.2509 -0.00063516 507.75069039109536 79.693 0.20505 73.517 73.421 73.626 -6.1757 14 12 2 0 0 0 8.7369 1 52214 52214 15.768 3.2367 1 6175600 40139 10367 26882 27403 46998 46998 -0.017000930687345317 MLTILEAETL 10 Unmodified _MLTILEAETL_ 0 0 0 REV__ENST00000457179.5_1_22:22311488-22316996:-|nuORF REV__ENST00000457179.5_1_22:22311488-22316996:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.2614135742188 2 567.309758 1132.60496 1.3905 0.00078884 2.5122 0.0014252 3.9027 0.002214 567.8119753397299 79.667 0.32301 73.491 73.404 73.727 -6.1757 30 19 2 0 0 0 0.23117 1 52275 52275 3.9444 0 1 12586000 + 40140 18007 26883 27404 46999 46999 0.04396385991435636 MLTKIHIG 8 Unmodified _MLTKIHIG_ 0 0 0 nc|ENSG00000080618|Q96IY4-2|CPB2;ENSG00000080618|ENST00000181383|CPB2 nc|ENSG00000080618|Q96IY4-2|CPB2 nc|ENSG00000080618|Q96IY4-2|CPB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7724609375 2 456.770406 911.526258 NaN NaN NaN NaN NaN NaN NaN 77.631 1 77.681 77.181 78.181 0.05011 0 0 0 0.97444 1 42850 42850 2.8892 0 1 40141 1303 26884 27405 47000 47000 0.06695623267683004 MLTKQNNSF 9 Unmodified _MLTKQNNSF_ 0 0 0 ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD;ENST00000489613.1_1_2:234294779-234297133:+|nuORF ENSG00000077044|ENST00000264057|DGKD ENSG00000077044|ENST00000264057|DGKD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7701416015625 2 541.768591 1081.52263 0.4679 0.00025349 0.39403 0.00021347 0.86192 0.00046696 541.7686884828003 29.769 0.39712 29.688 29.551 29.948 -0.080431 30 17 2 0 0 0 0.5029 1 15565 15565 7.2892 0 1 14882000 40142 1202 26885 27406 47001 47001 -0.014870912968262928 MLTLELLH 8 Unmodified _MLTLELLH_ 0 0 0 TRPV3|p.P424L|1|0.45|ENSG00000167723|chr17:3528967-3528967|G/A|missense_variant TRPV3|p.P424L|1|0.45|ENSG00000167723|chr17:3528967-3528967|G/A|missense_variant TRPV3|p.P424L|1|0.45|ENSG00000167723|chr17:3528967-3528967|G/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.7401733398438 2 485.275521 968.536489 1.1933 0.00057906 1.6906 0.00082041 2.8839 0.0013995 485.27679065852715 81.364 0.22809 75.188 75.06 75.288 -6.1757 14 12 2 0 0 0 8.7369 1 53429 53429 10.183 0 1 8279500 40143 30201 26886 27407 47002 47002 0.05096186202251829 MLTLYFYYKFR 11 Unmodified _MLTLYFYYKFR_ 0 0 0 nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 nc|ENSG00000040487|Q6ZP29-2|SLC66A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.939208984375 3 515.603858 1543.78974 0.57047 0.00029414 1 0.00051561 1.5705 0.00080975 515.604252580089 62.528 0.28949 62.04 61.894 62.183 -0.48764 21 13 2 0 0 0 0.73992 1 34085 34085 0.50596 0.051438 1 3369400 40144 650 26887 27408 47003 47003 0.039599938618266606 MLTPRLTTS 9 Unmodified _MLTPRLTTS_ 0 0 0 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 REV__nc|ENSG00000159625|Q8IY82-2|DRC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1020.716430664062 1 1019.55539 1018.54812 0.54032 0.00055088 -3.4655 -0.0035333 -2.9252 -0.0029824 1020.5536984369597 43.912 0.12058 43.897 43.845 43.966 -0.015667 9 6 2 0 0 0 0.55144 1 23535 23535 4.3292 1.44 1 101410000 + 40145 21490 26888 27409 47004 47004 0.0395838322557438 MLTTYTII 8 Unmodified _MLTTYTII_ 0 0 0 REV__ENSG00000061676|ENST00000361354|NCKAP1 REV__ENSG00000061676|ENST00000361354|NCKAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 477.73974609375 2 478.262079 954.509605 0.82375 0.00039397 2.8698 0.0013725 3.6936 0.0017665 478.263698240018 35.193 0.43329 31.098 30.882 31.316 -4.0951 33 25 2 0 0 0 8.7369 1 20344 20344 20.871 1.4322 1 15119000 + 40146 17333 26889 27410 47005 47005 0.03053077591073361 MLTWSHRSG 9 Unmodified _MLTWSHRSG_ 0 0 0 REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF REV__ENST00000430853.5_1_22:28315467-28385927:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7611694335938 2 537.761101 1073.50765 0.26013 0.00013989 -0.11462 -6.1636E-05 0.14551 7.825E-05 537.7606420473006 90.146 0.28778 90.146 89.985 90.273 0 47 20 3 0 0 0 0.48152 1 49837 49837 8.5933 0 1 1187800 + 40147 26971 26890 27411 47006 47006 -0.026165383741727055 MLVFLCLNSF 10 Unmodified _MLVFLCLNSF_ 0 0 0 REV__ENSG00000105983|ENST00000353442|LMBR1 REV__ENSG00000105983|ENST00000353442|LMBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3045654296875 2 593.803588 1185.59262 1.1963 0.00071037 -0.84069 -0.0004992 0.35561 0.00021116 593.8039000831919 50.098 0.44473 50.049 49.846 50.291 -0.048828 71 21 5 0 0 0 0.63399 1 27058 27058 9.3831 3.1773 1 7059100 + 40148 18480 26891 27412 47007 47007 0.00725071047372694 MLVKLEGKTL 10 Unmodified _MLVKLEGKTL_ 0 0 0 REV__ENSG00000163993|ENST00000296370|S100P REV__ENSG00000163993|ENST00000296370|S100P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8983764648438 3 377.898382 1130.67332 -0.095522 -3.6098E-05 0.81049 0.00030628 0.71497 0.00027019 377.8985835313887 32.755 0.32552 32.785 32.539 32.864 0.029747 31 13 3 0 0 0 0.71123 1 17181 17181 0.69767 0 1 6877500 + 40149 21845 26892 27413 47008 47008 0.11320675361980648 MLVKLEGKTL 10 Unmodified _MLVKLEGKTL_ 0 0 0 REV__ENSG00000163993|ENST00000296370|S100P REV__ENSG00000163993|ENST00000296370|S100P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8995666503906 3 377.898382 1130.67332 NaN NaN NaN NaN NaN NaN NaN 28.445 1 28.475 27.975 28.975 0.029564 0 0 0 0.96981 1 14811 14811 1.9064 1.1298 1 + 40150 21845 26892 27413 47009 47009 0.11320675361980648 MLVLEQFL 8 Unmodified _MLVLEQFL_ 0 0 0 nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446;ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D nc|ENSG00000083838|Q9NWS9-2|ZNF446 nc|ENSG00000083838|Q9NWS9-2|ZNF446 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 992.546875 1 992.548516 991.54124 3.7393 0.0037115 -3.5288 -0.0035025 0.21049 0.00020893 992.544281541211 99.569 0.13162 99.533 99.452 99.583 -0.036308 7 4 2 0 0 0 0.78849 1 55320 55320 9.3474 0 1 1039900 40151 1376 26893 27414 47010 47010 0.04513070345001324 MLVSTTVP 8 Unmodified _MLVSTTVP_ 0 0 0 ENSG00000177201|ENST00000641276|OR2T12;ENSG00000177462|ENST00000641945|OR2T8;ENSG00000177212|ENST00000641220|OR2T33 ENSG00000177201|ENST00000641276|OR2T12 ENSG00000177201|ENST00000641276|OR2T12 MSMS AL20221201_MKP_PDAC_01 4 423.9017333984375 2 424.233322 846.45209 NaN NaN NaN NaN NaN NaN NaN 70.319 1 64.144 63.644 64.644 -6.1757 0 0 0 0.93066 1 45948 45948 14.582 1.0738 1 40152 8667 26894 27415 47011 47011 0.0227223538548742 MLVTWELAL 9 Unmodified _MLVTWELAL_ 0 0 0 ENST00000443213.5_1_2:38977282-38978406:-|nuORF ENST00000443213.5_1_2:38977282-38978406:-|nuORF ENST00000443213.5_1_2:38977282-38978406:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.29638671875 2 538.296453 1074.57835 1.2366 0.00066566 -1.0489 -0.00056464 0.18766 0.00010102 538.295537557307 64.371 1.2139 58.196 57.704 58.917 -6.1757 107 66 2 0 0 0 0.28047 1 41894 41894 18.135 1.1927 1 152240000 40153 13419 26895 27416 47012 47012 0.04404741890743935 MLWEELGRVQ 10 Unmodified _MLWEELGRVQ_ 0 0 0 REV__ENST00000507013.5_2_4:166248880-166248985:+|nuORF REV__ENST00000507013.5_2_4:166248880-166248985:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.82470703125 2 630.823898 1259.63324 0.66087 0.0004169 -1.4418 -0.00090951 -0.78091 -0.00049262 630.8238621157132 101.52 0.10343 95.34 95.291 95.395 -6.1757 6 4 2 0 0 0 0.42068 1 68147 68147 20.454 8.213 1 7251400 + 40154 28095 26896 27417 47013 47013 0.013811286913778531 MLWFKYLS 8 Unmodified _MLWFKYLS_ 0 0 0 nc|ENSG00000197617|Q7Z5H4|VN1R5 nc|ENSG00000197617|Q7Z5H4|VN1R5 nc|ENSG00000197617|Q7Z5H4|VN1R5 MSMS AL20221201_MKP_PDAC_01 4 544.2875366210938 2 544.285889 1086.55722 NaN NaN NaN NaN NaN NaN NaN 56.919 1 50.942 50.442 51.442 -5.9769 0 0 0 0.63034 1 36363 36363 32.117 3.0354 1 40155 16489 26897 27418 47014 47014 0.017407765819143606 MLWIFWRM 8 Unmodified _MLWIFWRM_ 0 0 0 REV__ENSG00000108960|ENST00000262065|MMD REV__ENSG00000108960|ENST00000262065|MMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8710021972656 3 394.869881 1181.58781 NaN NaN NaN NaN NaN NaN NaN 17.897 1 17.911 17.411 18.411 0.013865 0 0 0 0.97444 1 8934 8934 0.45834 0 1 + 40156 18639 26898 27419 47015 47015 0.004282316952867404 MLWSSKKR 8 Unmodified _MLWSSKKR_ 0 0 0 REV__nc|ENSG00000163995|Q6H8Q1-3|ABLIM2 REV__nc|ENSG00000163995|Q6H8Q1-3|ABLIM2 MSMS AL20221201_MKP_PDAC_01 4 518.3148803710938 2 518.292037 1034.56952 NaN NaN NaN NaN NaN NaN NaN 95.075 1 88.9 88.4 89.4 -6.1757 0 0 0 0.92452 1 62974 62974 15.847 2.3393 1 + 40157 29745 26899 27420 47016 47016 0.05361813044964947 MLWVVYRL 8 Unmodified _MLWVVYRL_ 0 0 0 REV__ENST00000565633.1_1_16:88729753-88737893:+|nuORF REV__ENST00000565633.1_1_16:88729753-88737893:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.1669006347656 3 360.540529 1078.59976 0.996 0.0003591 0.14777 5.3277E-05 1.1438 0.00041238 360.5405684890051 17.08 0.28194 14.493 14.35 14.632 -2.5866 98 51 2 0 0 0 8.7369 1 8879 8879 7.9102 7.9102 1 17192000 + 40158 28869 26900 27421 47017 47017 0.06360171710139184 MLYMPWGY 8 Unmodified _MLYMPWGY_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MSMS AL20221201_MKP_PDAC_01 4 530.7352905273438 2 530.735174 1059.4558 NaN NaN NaN NaN NaN NaN NaN 53.736 1 47.931 47.431 48.431 -5.8042 0 0 0 0.94749 1 33995 33995 11.114 2.5212 1 + 40159 20011 26901 27422 47018 47018 -0.07155418112279222 MLYQRCAEY 9 Unmodified _MLYQRCAEY_ 0 0 0 REV__nc|ENSG00000104517|O95071-2|UBR5 REV__nc|ENSG00000104517|O95071-2|UBR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8458251953125 3 392.84406 1175.51035 NaN NaN NaN NaN NaN NaN NaN 79.808 1 79.319 78.819 79.819 -0.48932 0 0 0 0.84564 1 43714 43714 1.0715 0.29493 1 + 40160 18361 26902 27423 47019 47019 -0.07038451031530712 MLYRRMDGMIS 11 Unmodified _MLYRRMDGMIS_ 0 0 0 ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.3295288085938 2 686.830343 1371.64613 0.33041 0.00022694 -1.3116 -0.00090087 -0.98122 -0.00067393 686.829427734823 63.662 0.30248 63.176 63.016 63.318 -0.48617 24 13 2 0 0 0 0.71036 1 34723 34723 3.2813 0.28607 1 1888800 40161 13889 26903 27424 47020 47020 -0.024824995123708504 MLYRRMDGMIS 11 Unmodified _MLYRRMDGMIS_ 0 0 0 ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 686.830343 1371.64613 0.33041 0.00022694 -1.3116 -0.00090087 -0.98122 -0.00067393 686.829427734823 63.662 0.30248 63.176 63.016 63.318 -0.48617 -0.03346 -9.1923E-05 NaN 3.2813 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1888800 40162 13889 26903 27424 -0.024824995123708504 MLYRRMDGMIS 11 Unmodified _MLYRRMDGMIS_ 0 0 0 ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF ENST00000471951.6_2_20:45927519-45927630:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 686.830343 1371.64613 0.58432 0.00040133 -1.1408 -0.00078352 -0.55645 -0.00038219 686.8294702964102 63.264 0.4521 63.243 63.008 63.46 -0.021614 0.03346 0.00014279 NaN 3.2813 30 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2318800 40163 13889 26903 27424 -0.024824995123708504 MLYVQEMV 8 Unmodified _MLYVQEMV_ 0 0 0 REV__ENST00000419040.6_2_6:90539686-90564595:+|nuORF REV__ENST00000419040.6_2_6:90539686-90564595:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2006225585938 2 506.745739 1011.47692 0.089708 4.5459E-05 0.53567 0.00027145 0.62538 0.00031691 506.74566218636687 79.082 0.20178 78.596 78.506 78.708 -0.48596 12 8 2 0 0 0 8.7369 1 43339 43339 11.114 0 1 318850 + 40164 26816 26904 27425 47021 47021 -0.02835452803424232 MLYWFLWK 8 Unmodified _MLYWFLWK_ 0 0 0 ENST00000205386.8_1_7:107703372-107706232:-|nuORF ENST00000205386.8_1_7:107703372-107706232:-|nuORF ENST00000205386.8_1_7:107703372-107706232:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.81201171875 2 593.809531 1185.60451 0.16084 9.5507E-05 3.1026 0.0018423 3.2634 0.0019378 593.8111307533127 74.042 0.25751 74.086 73.924 74.182 0.043983 17 11 2 0 0 0 0.80232 1 40833 40833 5.2307 0.47466 1 1745100 40165 10989 26905 27426 47022 47022 0.019130558529013797 MMKLWARLV 9 Unmodified _MMKLWARLV_ 0 0 0 REV__ENST00000366607.4_1_1:235275359-235275413:-|nuORF REV__ENST00000366607.4_1_1:235275359-235275413:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.2832641601562 3 383.220802 1146.64058 NaN NaN NaN NaN NaN NaN NaN 100.61 1 100.47 99.973 100.97 -0.13293 0 0 0 0.85737 1 54914 54914 0.26902 0 1 + 40166 25958 26906 27427 47023 47023 0.07312189758113163 MMKMYKKM 8 Unmodified _MMKMYKKM_ 0 0 0 REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7691650390625 2 545.767637 1089.52072 NaN NaN NaN NaN NaN NaN NaN 102.4 1 102.28 101.78 102.78 -0.11613 0 0 0 0.97444 1 55868 55868 0.69038 0.088878 1 + 40167 26606 26907 27428 47024 47024 -0.020458829023027647 MMKMYKKMK 9 Unmodified _MMKMYKKMK_ 0 0 0 REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8790893554688 3 406.879171 1217.61568 NaN NaN NaN NaN NaN NaN NaN 9.4715 1 9.3819 8.8819 9.8819 -0.08967 0 0 0 0.8622 1 4633 4633 0 0 1 + 40168 26606 26908 27429 47025 47025 0.015580505688603807 MMLDDLLQL 9 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))LDDLLQL_ M(1)M(1)LDDLLQL M(44)M(44)LDDLLQL 0 0 2 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2725830078125 2 562.272318 1122.53008 0.33375 0.00018766 0.035545 1.9986E-05 0.3693 0.00020765 562.2725919657162 86.18 0.67664 86.18 85.817 86.494 0 98 32 4 0 0 0 0.052168 1 47694 47694 44.407 32.767 1 2284300 40169 4726 26909 27430 47026 47026 855;856 -0.0262811981140203 MMLDDLLQL 9 2 Oxidation (M) _M(Oxidation (M))M(Oxidation (M))LDDLLQL_ M(1)M(1)LDDLLQL M(44)M(44)LDDLLQL 0 0 2 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2730102539062 2 562.272318 1122.53008 0.66102 0.00037167 -0.83482 -0.00046939 -0.17379 -9.7719E-05 562.2720043035765 86.675 0.86507 86.172 85.791 86.656 -0.50318 94 35 4 0 0 0 0.052168 1 47391 47391 44.407 32.767 1 2455200 40170 4726 26909 27430 47027 47027 855;856 -0.0262811981140203 MMLDDLLQL 9 Unmodified _MMLDDLLQL_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2777099609375 2 546.277403 1090.54025 0.7979 0.00043587 -0.0026856 -1.4671E-06 0.79521 0.00043441 546.2767701676553 101.44 0.1161 95.262 95.192 95.309 -6.1757 13 5 3 0 0 0 0.087258 1 68077 68077 36.044 19.102 1 32427000 40171 4726 26909 27431 47028 47028 -0.0013951208618436794 MMLYEVNMP 9 Unmodified _MMLYEVNMP_ 0 0 0 REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A REV__nc|ENSG00000038532|Q2KHT3-2|CLEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5020446777344 3 376.502646 1126.48611 -0.0044873 -1.6895E-06 0.77985 0.00029362 0.77536 0.00029193 376.5028905166651 62.375 0.31214 62.375 62.257 62.569 0 39 21 2 0 0 0 0.58466 1 34768 34768 1.1933 0.23107 1 11281000 + 40172 17181 26910 27432 47029 47029 -0.07207427509410991 MMMTDQIPLE 10 Unmodified _MMMTDQIPLE_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;nc|ENSG00000075420|Q53EP0-3|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.7689208984375 2 604.771628 1207.5287 NaN NaN NaN NaN NaN NaN NaN 16.449 1 16.45 15.95 16.95 0.0010548 0 0 0 0.99388 1 8112 8112 1.3295 0.72803 1 40173 1157 26911 27433 47030 47030 -0.06676077171823636 MMNLLRNNSCL 11 Unmodified _MMNLLRNNSCL_ 0 0 0 ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB;ENST00000517917.5_1_8:42128977-42177019:+|nuORF;ENST00000520201.5_1_8:42129679-42177019:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8799133300781 3 436.878887 1307.61483 NaN NaN NaN NaN NaN NaN NaN 95.936 1 95.936 95.436 96.436 0 0 0 0 0.94293 1 53020 53020 0.40827 0 1 40174 2199 26912 27434 47031 47031 -0.02667072546455529 MMPFWGLGI 9 Unmodified _MMPFWGLGI_ 0 0 0 ENST00000171887.8_1_2:218667769-218668381:-|nuORF ENST00000171887.8_1_2:218667769-218668381:-|nuORF ENST00000171887.8_1_2:218667769-218668381:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.175048828125 3 351.17497 1050.50308 -0.32807 -0.00011521 1.3591 0.00047729 1.0311 0.00036208 351.17548403211924 34.77 0.17966 34.578 34.497 34.677 -0.19131 12 7 2 0 0 0 0.53666 1 18200 18200 2.9952 0 1 1888500 40175 10979 26913 27435 47032 47032 -0.02015138841306907 MMPYFCLDN 9 Unmodified _MMPYFCLDN_ 0 0 0 ENSG00000139514|ENST00000380752|SLC7A1 ENSG00000139514|ENST00000380752|SLC7A1 ENSG00000139514|ENST00000380752|SLC7A1 MSMS AL20221201_MKP_PDAC_01 4 378.4893188476562 3 378.486996 1132.43916 NaN NaN NaN NaN NaN NaN NaN 43.294 1 38.529 38.029 39.029 -4.7648 0 0 0 0.82739 1 26279 26279 2.4985 0 1 40176 5162 26914 27436 47033 47033 -0.12176287060538016 MMRTYFDELY 10 Unmodified _MMRTYFDELY_ 0 0 0 REV__ENSG00000179761|ENST00000323372|PIPOX REV__ENSG00000179761|ENST00000323372|PIPOX MSMS AL20221201_MKP_PDAC_01 4 456.8718872070312 3 456.870275 1367.58899 NaN NaN NaN NaN NaN NaN NaN 25.63 1 22.715 22.215 23.215 -2.9146 0 0 0 0.97302 1 14046 14046 3.5871 2.2574 1 + 40177 23116 26915 27437 47034 47034 -0.08009643517107179 MMSFYADKPIY 11 Unmodified _MMSFYADKPIY_ 0 0 0 REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 683.3170776367188 2 683.314517 1364.61448 2.0678 0.001413 1.2874 0.00087967 3.3551 0.0022926 683.3149055638578 93.788 0.31908 93.811 93.597 93.916 0.022987 27 12 3 0 0 0 0.65846 1 52132 52132 8.1555 0 1 1889800 + 40178 21186 26916 27438 47035 47035 -0.05324168994661704 MMSFYADKPIY 11 Unmodified _MMSFYADKPIY_ 0 0 0 REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 683.314517 1364.61448 0.3586 0.00024504 0.13922 9.513E-05 0.49782 0.00034017 683.3145625939549 94.178 0.16031 93.757 93.729 93.89 -0.42043 -0.027126 -0.00097304 NaN 8.1555 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 445030 + 40179 21186 26916 27438 -0.05324168994661704 MMWKNGAEWF 10 Unmodified _MMWKNGAEWF_ 0 0 0 REV__ENST00000319406.8_1_2:30670199-30682472:+|nuORF REV__ENST00000319406.8_1_2:30670199-30682472:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5490417480469 3 433.859821 1298.55763 0.14684 6.3708E-05 0.88051 0.00038202 1.0273 0.00044572 433.8601359740752 29.822 0.4163 29.852 29.653 30.07 0.030106 45 16 4 0 0 0 0.23986 1 15670 15670 2.086 1.3883 1 28956000 + 40180 25403 26917 27439 47036 47036 -0.07970171760553058 MNAFQVSANF 10 Unmodified _MNAFQVSANF_ 0 0 0 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 REV__nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8733520507812 3 376.842936 1127.50698 -0.24329 -9.1682E-05 4.0609 0.0015303 3.8176 0.0014387 376.8447296908531 31.692 0.19746 31.692 31.58 31.778 0 17 9 3 0 0 0 0.23926 1 16567 16567 1.5923 0 1 1353600 + 40181 17071 26918 27440 47037 47037 -0.0516737781390475 MNEENMTELL 10 Unmodified _MNEENMTELL_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.268310546875 2 612.267764 1222.52097 0.58359 0.00035731 0.79178 0.00048478 1.3754 0.00084209 612.2683558905728 85.23 0.73569 84.728 84.365 85.1 -0.5015 114 55 4 0 0 0 0.60623 2 46605 46605;46700 10.824 0 1 5534500 40182 4072 26919 27441 47038;47039 47038 -0.08138513167750716 MNEMFSFY 8 Unmodified _MNEMFSFY_ 0 0 0 ENST00000485035.1_1_3:181328515-181417456:+|nuORF;ENST00000492337.5_1_3:181328352-181417456:+|nuORF ENST00000485035.1_1_3:181328515-181417456:+|nuORF ENST00000485035.1_1_3:181328515-181417456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8106384277344 3 356.810356 1067.40924 0.27193 9.7027E-05 -1.98 -0.00070649 -1.7081 -0.00060946 356.8110551466575 58.001 0.33636 58.001 57.794 58.131 0 31 13 4 0 0 0 0.80606 1 32309 32309 2.9952 1.151 1 1946300 40183 14162 26920 27442 47040 47040 -0.12176902734245232 MNHIVQTF 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))MNHIVQTF_ 1 0 0 ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185201|ENST00000616316|IFITM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2509765625 2 516.252577 1030.4906 0.50349 0.00025993 -0.20539 -0.00010603 0.2981 0.00015389 516.2527468200226 78.816 0.59307 72.64 72.356 72.949 -6.1757 59 35 2 0 0 0 0.37649 1 51514 51514 46.921 28.786 1 21733000 40184 9343 26921 27443 47041 47041 -0.02342458979978801 MNIYKLINEY 10 Unmodified _MNIYKLINEY_ 0 0 0 REV__nc|ENSG00000164100|O95803-3|NDST3 REV__nc|ENSG00000164100|O95803-3|NDST3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8344116210938 2 650.833931 1299.65331 NaN NaN NaN NaN NaN NaN NaN 21.985 1 21.999 21.499 22.499 0.013796 0 0 0 1.0024 1 11280 11280 0.40072 0 1 + 40185 21868 26922 27444 47042 47042 0.015468796313598432 MNLLKQHL 8 Unmodified _MNLLKQHL_ 0 0 0 ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1 ENSG00000172053|ENST00000306125|QARS1 ENSG00000172053|ENST00000306125|QARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7865600585938 2 498.786587 995.558621 1.2475 0.00062223 -0.82475 -0.00041137 0.42274 0.00021086 498.7861103278646 81.248 0.49189 81.308 81.041 81.533 0.059929 63 18 4 0 0 0 0.74163 1 44927 44927 13.508 3.3245 1 25739000 40186 8177 26923 27445 47043 47043 0.06066410670666755 MNMVTLIY 8 Unmodified _MNMVTLIY_ 0 0 0 REV__ENSG00000140873|ENST00000282849|ADAMTS18 REV__ENSG00000140873|ENST00000282849|ADAMTS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7481689453125 2 492.748282 983.48201 0.40984 0.00020195 0.024709 1.2175E-05 0.43455 0.00021413 492.7481160791859 36.19 0.29683 36.19 36.053 36.35 0 45 14 4 0 0 0 0.40035 2 19143 19143;19247 44.407 3.8186 1 40735000 + 40187 20500 26924 27446 47044;47045 47044 -0.010391489407993504 MNMVTLIY 8 Unmodified _MNMVTLIY_ 0 0 0 REV__ENSG00000140873|ENST00000282849|ADAMTS18 REV__ENSG00000140873|ENST00000282849|ADAMTS18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 492.748282 983.48201 -0.31487 -0.00015515 1.2172 0.00059979 0.90236 0.00044464 492.74871527976035 36.365 0.28027 36.116 35.952 36.232 -0.2497 -0.037197 0.00071791 NaN 44.407 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3817000 + 40188 20500 26924 27446 -0.010391489407993504 MNQPLAHYF 9 Unmodified _MNQPLAHYF_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7656860351562 2 560.765852 1119.51715 0.7282 0.00040835 -2.2517 -0.0012627 -1.5235 -0.0008543 560.7646924863593 64.633 0.25867 64.148 64.014 64.273 -0.48512 20 11 2 0 0 0 0.30562 1 35260 35260 16.942 2.3606 1 1970500 40189 6807 26925 27447 47046 47046 -0.03782770088673715 MNQPLAHYF 9 Unmodified _MNQPLAHYF_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.765852 1119.51715 1.3592 0.00076217 -1.6589 -0.00093024 -0.29972 -0.00016807 560.7639878722385 64.185 0.25912 64.175 64.017 64.276 -0.010529 0.013674 0.00039996 NaN 16.942 31 12 4 NaN NaN NaN NaN 0 NaN NaN 0 3633200 40190 6807 26925 27447 -0.03782770088673715 MNRHKEKLVS 10 Unmodified _MNRHKEKLVS_ 0 0 0 REV__ENSG00000165029|ENST00000374736|ABCA1 REV__ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3426513671875 2 621.342789 1240.67103 0.31805 0.00019762 -0.11654 -7.2409E-05 0.20151 0.00012521 621.3426537621423 96.484 0.24993 96.484 96.337 96.587 0 37 20 2 0 0 0 0.6966 1 53278 53278 3.2813 0 1 564050 + 40191 21973 26926 27448 47047 47047 0.06031639676848499 MNRRASQMLL 10 Unmodified _MNRRASQMLL_ 0 0 0 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 ENSG00000149742|ENST00000279178|SLC22A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3222045898438 2 610.323542 1218.63253 1.4843 0.00090593 -2.6166 -0.001597 -1.1323 -0.00069106 610.3217371149558 98.268 0.149 92.093 92.027 92.176 -6.1757 14 9 2 0 0 0 0.35903 1 65184 65184 24.021 3.4396 1 14994000 40192 6033 26927 27449 47048 47048 0.03196010770693647 MNSPHTLETTI 11 Unmodified _MNSPHTLETTI_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3040161132812 2 622.302995 1242.59144 0.85517 0.00053217 1.2667 0.00078829 2.1219 0.0013205 622.3036676888026 80.507 0.2724 80.015 79.853 80.126 -0.49247 28 10 3 0 0 0 0.71618 1 44072 44072 2.7352 0 1 939820 + 40193 29556 26928 27450 47049 47049 -0.0201547178776309 MNSPHTLETTI 11 Unmodified _MNSPHTLETTI_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.302995 1242.59144 0.85517 0.00053217 1.2667 0.00078829 2.1219 0.0013205 622.3036676888026 80.507 0.2724 80.015 79.853 80.126 -0.49247 0.02758 0.00056621 NaN 2.7352 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 939820 + 40194 29556 26928 27450 -0.0201547178776309 MNSPHTLETTI 11 Unmodified _MNSPHTLETTI_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 622.302995 1242.59144 0.34565 0.0002151 -0.52217 -0.00032495 -0.17652 -0.00010985 622.3032302703856 79.902 0.24586 79.959 79.824 80.07 0.057587 -0.02758 -0.0016603 NaN 2.7352 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 969650 + 40195 29556 26928 27450 -0.0201547178776309 MNSTLTFFLL 10 Unmodified _MNSTLTFFLL_ 0 0 0 ENST00000392455.7_2_3:191109610-191109739:+|nuORF ENST00000392455.7_2_3:191109610-191109739:+|nuORF ENST00000392455.7_2_3:191109610-191109739:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8116455078125 2 593.812467 1185.61038 0.78119 0.00046388 -3.1723 -0.0018838 -2.3911 -0.0014199 593.8110233382305 98.453 0.13028 92.277 92.221 92.352 -6.1757 17 8 3 0 0 0 0.11755 1 65327 65327 43.858 2.0187 1 17623000 40196 12673 26929 27451 47050 47050 0.025001095739526136 MNVHYTQVI 9 Unmodified _MNVHYTQVI_ 0 0 0 REV__nc|ENSG00000072110|P12814-2|ACTN1 REV__nc|ENSG00000072110|P12814-2|ACTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7788696289062 2 552.778959 1103.54336 1.3225 0.00073107 -0.65026 -0.00035945 0.67229 0.00037163 552.7782851508306 64.493 0.73776 58.317 57.996 58.734 -6.1757 78 40 3 0 0 0 0.25681 1 41845 41845 19.257 2.1441 1 29055000 + 40197 17507 26930 27452 47051 47051 -0.00426500917183148 MNVLRAGHRVL 11 Unmodified _MNVLRAGHRVL_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5807800292969 3 422.580158 1264.71864 1.0224 0.00043203 1.0176 0.00043 2.0399 0.00086204 422.91499473068194 66.301 0.37497 66.311 66.166 66.54 0.0095596 41 18 3 0 0 0 0.72131 1 36366 36366 2.2527 1.0379 1 5378700 + 40198 30047 26931 27453 47052 47052 0.096873386677089 MNVLRAGHRVL 11 Unmodified _MNVLRAGHRVL_ 0 0 0 REV__nc|ENSG859|P60507|ERVFC1 REV__nc|ENSG859|P60507|ERVFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5810546875 3 422.580158 1264.71864 0.44643 0.00018865 1.0667 0.00045075 1.5131 0.0006394 422.5805139857271 68.185 0.65858 68.21 67.963 68.621 0.025146 85 32 3 0 0 0 0.67477 2 37524 37414;37524 6.6235 3.9922 1 7258700 + 40199 30047 26931 27453 47053;47054 47054 0.096873386677089 MNWRLFSK 8 Unmodified _MNWRLFSK_ 0 0 0 ENSG00000151353|ENST00000281017|TMEM18;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF ENSG00000151353|ENST00000281017|TMEM18 ENSG00000151353|ENST00000281017|TMEM18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2849731445312 2 541.284211 1080.55387 0.64164 0.00034731 -0.48494 -0.00026249 0.15671 8.4823E-05 541.2839207012797 83.04 0.38788 83.102 82.869 83.256 0.062004 33 14 3 0 0 0 0.6895 1 45903 45903 18.135 2.2878 1 8625200 40200 6107 26932 27454 47055 47055 0.016815265279319647 MNWYHISF 8 Unmodified _MNWYHISF_ 0 0 0 ENST00000514430.5_1_4:103553216-103586042:-|nuORF;ENSG00000109323|ENST00000647097|MANBA ENST00000514430.5_1_4:103553216-103586042:-|nuORF ENST00000514430.5_1_4:103553216-103586042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2486572265625 2 549.247295 1096.48004 0.77447 0.00042537 1.2899 0.00070849 2.0644 0.0011339 549.2481516884095 42.48 0.3646 42.48 42.299 42.663 0 66 17 5 0 0 0 0.75262 1 23080 23080 12.532 3.1841 1 18336000 40201 2643 26933 27455 47056 47056 -0.06434441634428367 MNYCMQEIY 9 Unmodified _MNYCMQEIY_ 0 0 0 nc|ENSG00000151090|P10828-2|THRB nc|ENSG00000151090|P10828-2|THRB nc|ENSG00000151090|P10828-2|THRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8256530761719 3 398.825789 1193.45554 -0.69298 -0.00027638 1.0111 0.00040327 0.31816 0.00012689 398.8260956754508 48.644 0.34752 48.644 48.413 48.761 0 43 16 3 0 0 0 0.5029 1 26643 26643 4.5289 0 1 10340000 40202 16270 26934 27456 47057 47057 -0.13345205894461287 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(80)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4358520507812 1 894.438966 893.431689 -0.14327 -0.00012814 0.41861 0.00037442 0.27535 0.00024628 894.4396117140908 43.574 0.28874 43.574 43.418 43.706 0 24 13 2 0 0 0 0.01018 2 23615 23615;23728 79.935 43.89 1 13945000 40203 9367 26935 27457 47058;47059 47058 1539 -0.019289352743157906 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(56)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7233276367188 2 447.723121 893.431689 0.16905 7.5685E-05 -0.40198 -0.00017997 -0.23293 -0.00010429 447.72295761297806 43.574 0.34731 43.574 43.359 43.706 0 37 16 3 0 0 0 0.028712 2 23621 23621;23731 56.048 32.9 1 40371000 40204 9367 26935 27457 47060;47061 47060 1539 -0.019289352743157906 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(56)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.7230529785156 2 447.723121 893.431689 NaN NaN NaN NaN NaN NaN NaN 43.9 1 43.9 43.4 44.4 0 0 0 0 0.053568 1 23871 23871 56.048 19.582 1 40205 9367 26935 27457 47062 47062 1539 -0.019289352743157906 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(80)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 894.4384155273438 1 894.438966 893.431689 0.63951 0.000572 0.28748 0.00025713 0.92699 0.00082913 894.4392027915219 50.513 0.70728 44.974 44.344 45.051 -5.5391 61 45 2 0 0 0 0.01018 4 31389 31258;31389;31528;31673 79.935 43.89 1 14758000 40206 9367 26935 27457 47063;47064;47065;47066 47064 1539 -0.019289352743157906 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(46)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7242126464844 2 447.723121 893.431689 1.1615 0.00052005 -0.56801 -0.00025431 0.59354 0.00026574 447.7232915119749 50.071 0.36498 44.532 44.282 44.647 -5.5391 41 23 2 0 0 0 0.047696 1 31394 31394 45.75 18.866 1 26113000 40207 9367 26935 27457 47067 47067 1539 -0.019289352743157906 MPAAGGVLY 9 Oxidation (M) _M(Oxidation (M))PAAGGVLY_ M(1)PAAGGVLY M(46)PAAGGVLY 0 0 1 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7239379882812 2 447.723121 893.431689 1.2469 0.00055828 0.13594 6.0866E-05 1.3829 0.00061915 447.7230721916751 50.377 0.45173 44.838 44.633 45.085 -5.5391 61 28 3 0 0 0 0.047696 1 31691 31691 45.75 22.602 1 27929000 40208 9367 26935 27457 47068 47068 1539 -0.019289352743157906 MPAAGGVLY 9 Unmodified _MPAAGGVLY_ 0 0 0 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 878.4437866210938 1 878.444051 877.436775 -0.26304 -0.00023107 0.21346 0.00018751 -0.049581 -4.3554E-05 878.4442191202146 53.964 0.25864 53.497 53.327 53.586 -0.46664 21 12 2 0 0 0 0.028712 1 29172 29172 56.048 38.962 1 2783700 40209 9367 26935 27458 47069 47069 -0.006846314116955909 MPAAGGVLY 9 Unmodified _MPAAGGVLY_ 0 0 0 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 878.44482421875 1 878.444051 877.436775 0.97622 0.00085755 -0.70988 -0.00062359 0.26634 0.00023396 878.4435944201803 61.392 0.49538 55.244 54.978 55.473 -6.1478 60 24 3 0 0 0 0.016115 3 39419 39419;39547;39669 67.413 50.326 1 113370000 40210 9367 26935 27458 47070;47071;47072 47070 -0.006846314116955909 MPAAGGVLY 9 Unmodified _MPAAGGVLY_ 0 0 0 ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS ENSG00000185359|ENST00000329138|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7251892089844 2 439.725664 877.436775 1.2172 0.00053525 -0.65944 -0.00028997 0.5578 0.00024528 439.72532978853206 61.406 0.43717 55.258 55.036 55.473 -6.1478 35 21 2 0 0 0 0.028712 2 39504 39504;39641 56.048 31.838 1 35160000 40211 9367 26935 27458 47073;47074 47073 -0.006846314116955909 MPAAKRLRL 9 Unmodified _MPAAKRLRL_ 0 0 0 ENSG00000125651|ENST00000394456|GTF2F1;ENST00000594213.5_1_19:6380485-6381059:-|nuORF ENSG00000125651|ENST00000394456|GTF2F1 ENSG00000125651|ENST00000394456|GTF2F1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5549926757812 3 352.555061 1054.64335 1.4422 0.00050844 -0.21297 -7.5082E-05 1.2292 0.00043336 352.5549071573184 28.882 0.32035 25.733 25.555 25.875 -3.1482 28 16 2 0 0 0 0.016184 3 16206 16088;16151;16206 51.63 15.124 1 126110000 40212 3867 26936 27459 47075;47076;47077 47077 0.11821781207277127 MPAAQEGAVAF 11 Oxidation (M) _M(Oxidation (M))PAAQEGAVAF_ M(1)PAAQEGAVAF M(50)PAAQEGAVAF 0 0 1 ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP ENST00000480730.5_1_6:33272736-33281818:-|nuORF ENST00000480730.5_1_6:33272736-33281818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2630615234375 2 554.260599 1106.50665 0.14505 8.0395E-05 -0.30309 -0.00016799 -0.15804 -8.7597E-05 554.2607613828851 45.206 0.29036 45.206 45.016 45.306 0 40 14 3 0 0 0 0.056186 2 24555 24555;24661 49.554 35.648 1 46861000 40213 10622 26937 27460 47078;47079 47078 1706 -0.04234797533740675 MPAAQEGAVAF 11 Oxidation (M) _M(Oxidation (M))PAAQEGAVAF_ M(1)PAAQEGAVAF M(42)PAAQEGAVAF 0 0 1 ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP ENST00000480730.5_1_6:33272736-33281818:-|nuORF ENST00000480730.5_1_6:33272736-33281818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2620239257812 2 554.260599 1106.50665 0.30863 0.00017106 1.4137 0.00078355 1.7223 0.00095461 554.2618526024762 45.413 0.31628 45.413 45.288 45.605 0 42 17 3 0 0 0 0.10451 1 24769 24769 41.956 22.699 1 54568000 40214 10622 26937 27460 47080 47080 1706 -0.04234797533740675 MPAAQEGAVAF 11 Unmodified _MPAAQEGAVAF_ 0 0 0 ENST00000480730.5_1_6:33272736-33281818:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;nc|ENSG00000231925|O15533-3|TAPBP ENST00000480730.5_1_6:33272736-33281818:-|nuORF ENST00000480730.5_1_6:33272736-33281818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.26318359375 2 546.263142 1090.51173 0.4537 0.00024784 -1.6193 -0.00088459 -1.1656 -0.00063675 546.7638019091746 52.884 0.43781 52.884 52.728 53.166 0 78 20 5 0 0 0 0.46131 2 29363 29253;29363 18.373 6.1324 1 10466000 40215 10622 26937 27461 47081;47082 47082 -0.02990493671131844 MPAATDNRY 9 Unmodified _MPAATDNRY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7384033203125 2 519.737291 1037.46003 -0.028537 -1.4832E-05 0.51864 0.00026955 0.4901 0.00025472 519.7377814319453 25.476 0.32475 22.593 22.406 22.73 -2.8831 38 17 3 0 0 0 0.0071894 1 13915 13915 111.29 69.192 1 7593900 40216 10721 26938 27462 47083 47083 -0.05720237365039793 MPAATDNRY 9 Unmodified _MPAATDNRY_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.737291 1037.46003 -0.063283 -3.289E-05 1.2022 0.00062483 1.1389 0.00059193 519.7376331235323 22.355 0.19923 22.355 22.245 22.444 0 -0.11886 0.00057696 NaN 111.29 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 788540 40217 10721 26938 27462 -0.05720237365039793 MPADIATLL 9 Unmodified _MPADIATLL_ 0 0 0 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MSMS AL20221201_MKP_PDAC_01 4 472.7603759765625 2 472.759704 943.504854 NaN NaN NaN NaN NaN NaN NaN 95.949 1 89.773 89.273 90.273 -6.1757 0 0 0 0.36554 1 63564 63564 21.747 1.293 1 40218 6951 26939 27463 47084 47084 0.03084193448307815 MPADSGYPAY 10 Oxidation (M) _M(Oxidation (M))PADSGYPAY_ M(1)PADSGYPAY M(57)PADSGYPAY 0 0 1 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2245483398438 2 544.223682 1086.43281 -0.51182 -0.00027855 0.025669 1.3969E-05 -0.48616 -0.00026458 544.2237614207462 34.17 0.4356 34.17 34.025 34.46 0 32 22 2 0 0 0 0.051739 2 17929 17929;18037 57.471 45.831 1 10672000 40219 3048 26940 27464 47085;47086 47085 526 -0.10694765696075592 MPADSGYPAY 10 Unmodified _MPADSGYPAY_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2255859375 2 536.226225 1070.4379 0.59145 0.00031715 -0.22082 -0.00011841 0.37063 0.00019874 536.2263555411793 48.1 0.48749 42.866 42.599 43.087 -5.2339 51 29 2 0 0 0 0.42068 1 29842 29842 20.454 10.38 1 18419000 40220 3048 26940 27465 47087 47087 -0.09450461833444024 MPADTNKAF 9 Oxidation (M) _M(Oxidation (M))PADTNKAF_ M(1)PADTNKAF M(58)PADTNKAF 0 0 1 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7333374023438 2 505.734217 1009.45388 -0.038171 -1.9304E-05 -1.3329 -0.00067409 -1.3711 -0.00069339 505.73333005874946 20.979 0.6447 20.979 20.589 21.233 0 226 91 4 0 0 0 0.025842 2 10514 10514;10612 57.722 29.235 1 11802000 40221 3827 26941 27466 47088;47089 47088 682 -0.05046755596549701 MPADTNKAF 9 Oxidation (M) _M(Oxidation (M))PADTNKAF_ M(1)PADTNKAF M(48)PADTNKAF 0 0 1 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7330322265625 2 505.734217 1009.45388 0.10351 5.2347E-05 -1.4447 -0.00073064 -1.3412 -0.00067829 505.73303306133374 23.216 0.29921 20.437 20.287 20.586 -2.7784 50 28 2 0 0 0 0.044011 1 12603 12603 47.749 26.002 1 17053000 40222 3827 26941 27466 47090 47090 682 -0.05046755596549701 MPADTNKAF 9 Oxidation (M) _M(Oxidation (M))PADTNKAF_ M(1)PADTNKAF M(52)PADTNKAF 0 0 1 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7330322265625 2 505.734217 1009.45388 0.13246 6.6991E-05 -1.1744 -0.00059392 -1.0419 -0.00052693 505.73299581656914 23.515 0.37516 20.688 20.523 20.898 -2.8273 64 22 4 0 0 0 0.036857 1 12708 12708 51.63 29.883 1 15493000 40223 3827 26941 27466 47091 47091 682 -0.05046755596549701 MPADTNKAF 9 Oxidation (M) _M(Oxidation (M))PADTNKAF_ M(1)PADTNKAF M(42)PADTNKAF 0 0 1 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MSMS AL20221201_MKP_PDAC_01 4 505.7336730957031 2 505.734217 1009.45388 NaN NaN NaN NaN NaN NaN NaN 23.119 1 20.341 19.841 20.841 -2.7784 0 0 0 0.10661 1 12489 12489 41.956 21.084 1 40224 3827 26941 27466 47092 47092 682 -0.05046755596549701 MPADTNKAF 9 Unmodified _MPADTNKAF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7354736328125 2 497.73676 993.458967 -0.45394 -0.00022594 -0.6213 -0.00030924 -1.0752 -0.00053518 497.7365291223734 28.569 0.33958 28.569 28.402 28.742 0 35 18 3 0 0 0 0.08691 1 14747 14747 36.127 3.8215 1 4044700 40225 3827 26941 27467 47093 47093 -0.038024517339295016 MPADTNKAF 9 Unmodified _MPADTNKAF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7374267578125 2 497.73676 993.458967 0.99539 0.00049544 0.14898 7.4155E-05 1.1444 0.0005696 497.7370327236759 32.482 0.56074 28.626 28.401 28.961 -3.8562 101 30 4 0 0 0 0.023481 2 18525 18525;18645 60.074 24.03 1 111270000 40226 3827 26941 27467 47094;47095 47094 -0.038024517339295016 MPADYVNKL 9 Oxidation (M) _M(Oxidation (M))PADYVNKL_ M(1)PADYVNKL M(130)PADYVNKL 0 0 1 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7650146484375 2 533.765517 1065.51648 0.44262 0.00023626 -2.1346 -0.0011394 -1.692 -0.00090312 533.7648609593988 38.238 0.19836 38.238 38.108 38.306 0 17 12 2 0 0 0 0.0021556 1 20402 20402 131.27 86.861 1 6479400 40227 7461 26942 27468 47096 47096 1285 -0.013656095283749892 MPAEIVELH 9 Oxidation (M) _M(Oxidation (M))PAEIVELH_ M(1)PAEIVELH M(74)PAEIVELH 0 0 1 ENSG00000100811|ENST00000262238|YY1 ENSG00000100811|ENST00000262238|YY1 ENSG00000100811|ENST00000262238|YY1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7650756835938 2 527.765517 1053.51648 NaN NaN NaN NaN NaN NaN NaN 40.991 1 40.991 40.491 41.491 0 0 0 0 0.023279 1 22074 22074 74.423 47.539 1 40228 1878 26943 27469 47097 47097 312 -0.008136095283589384 MPAFLSRASAL 11 Oxidation (M) _M(Oxidation (M))PAFLSRASAL_ M(1)PAFLSRASAL M(44)PAFLSRASAL 0 0 1 ENST00000603524.5_1_19:35610107-35610293:+|nuORF ENST00000603524.5_1_19:35610107-35610293:+|nuORF ENST00000603524.5_1_19:35610107-35610293:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3164672851562 2 590.313166 1178.61178 0.042421 2.5042E-05 3.0125 0.0017783 3.0549 0.0018033 590.3147665191505 54.32 0.25793 54.253 54.101 54.359 -0.066936 21 12 2 0 0 0 0.08701 1 29464 29464 43.982 29.144 1 5413300 40229 15832 26944 27470 47098 47098 1781 0.02961743662694971 MPALFSDHTF 10 Oxidation (M) _M(Oxidation (M))PALFSDHTF_ M(1)PALFSDHTF M(82)PALFSDHTF 0 0 1 ENST00000525268.2_1_11:77612547-77635854:-|nuORF;ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF ENST00000525268.2_1_11:77612547-77635854:-|nuORF;ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2713012695312 2 591.268424 1180.5223 0.29074 0.0001719 1.7592 0.0010402 2.05 0.0012121 591.2697872329379 58.199 0.30658 57.71 57.556 57.863 -0.48974 36 14 3 0 0 0 0.013474 1 31628 31628 81.613 58.877 1 2543300 40230 5997;14793 26945 27471 47099 47099 1073 -0.06074511016709039 MPALFSDHTF 10 Oxidation (M) _M(Oxidation (M))PALFSDHTF_ M(1)PALFSDHTF M(140)PALFSDHTF 0 0 1 ENST00000525268.2_1_11:77612547-77635854:-|nuORF;ENSG00000149262|ENST00000534064|INTS4;ENST00000533180.1_1_11:77612465-77632469:-|nuORF;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF ENST00000525268.2_1_11:77612547-77635854:-|nuORF;ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.26953125 2 591.268424 1180.5223 0.27696 0.00016376 0.1044 6.173E-05 0.38136 0.00022549 591.268808984845 58.535 0.23112 58.044 57.901 58.133 -0.49079 20 10 2 0 0 0 1.293E-07 1 31822 31822 141.83 119.09 1 2484200 40231 5997;14793 26945 27471 47100 47100 1073 -0.06074511016709039 MPAMVEKGP 9 Unmodified _MPAMVEKGP_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MSMS AL20221201_MKP_PDAC_01 4 480.2370910644531 2 480.238081 958.461609 NaN NaN NaN NaN NaN NaN NaN 17.078 1 14.492 13.992 14.992 -2.5866 0 0 0 0.6557 1 8900 8900 10.824 1.4408 1 40232 1541 26946 27472 47101 47101 -0.019283196006199432 MPANGETVTL 10 Unmodified _MPANGETVTL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000497304.6_1_1:1247871-1248066:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7557373046875 2 516.755149 1031.49575 1.1017 0.0005693 -0.50754 -0.00026227 0.59415 0.00030703 516.7549833370651 55.096 0.48598 49.175 48.921 49.407 -5.9211 72 30 3 0 0 0 0.067957 2 34901 34901;35044 53.833 24.751 1 26585000 40233 3985 26947 27473 47102;47103 47102 -0.018741999080248206 MPANMDKHAL 10 Unmodified _MPANMDKHAL_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;ENST00000467380.1_1_10:104929178-104934715:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MSMS AL20221201_MKP_PDAC_01 4 376.5161437988281 3 376.516055 1126.52633 NaN NaN NaN NaN NaN NaN NaN 29.694 1 26.393 25.893 26.893 -3.3016 0 0 0 0.095408 1 16716 16716 44.392 34.848 1 40234 1191 26948 27474 47104 47104 -0.03186744794652441 MPANMDKHAL 10 Unmodified _MPANMDKHAL_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;ENST00000467380.1_1_10:104929178-104934715:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MSMS AL20221201_MKP_PDAC_01 4 376.5169067382812 3 376.516055 1126.52633 NaN NaN NaN NaN NaN NaN NaN 29.89 1 26.589 26.089 27.089 -3.3016 0 0 0 0.52595 1 16836 16836 27.088 14.914 1 40235 1191 26948 27474 47105 47105 -0.03186744794652441 MPANNKCLIF 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PANNKC(Carbamidomethyl (C))LIF_ MPANNKC(1)LIF M(1)PANNKCLIF MPANNKC(52)LIF M(52)PANNKCLIF 0 1 1 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;ENST00000448973.6_1_16:684599-685202:-|nuORF;ENST00000456420.6_2_16:684599-686105:-|nuORF nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2997436523438 2 612.299201 1222.58385 0.39628 0.00024264 -0.10852 -6.6448E-05 0.28776 0.00017619 612.2994386456754 48.935 0.34609 48.563 48.388 48.734 -0.37172 57 17 4 0 0 0 0.074936 2 26325 26216;26325 52.268 34.122 1 12276000 40236 4250 26949 27475 47106;47107 47107 427 754 -0.018539025890731864 MPANNKCLIF 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PANNKC(Carbamidomethyl (C))LIF_ MPANNKC(1)LIF M(1)PANNKCLIF MPANNKC(72)LIF M(72)PANNKCLIF 0 1 1 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;ENST00000448973.6_1_16:684599-685202:-|nuORF;ENST00000456420.6_2_16:684599-686105:-|nuORF nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3002319335938 2 612.299201 1222.58385 0.54207 0.00033191 -0.61206 -0.00037476 -0.069987 -4.2853E-05 612.2990006452789 53.292 0.47688 47.488 47.234 47.711 -5.8042 68 29 3 0 0 0 0.024115 2 33668 33544;33668 71.922 52.665 1 40230000 40237 4250 26949 27475 47108;47109 47109 427 754 -0.018539025890731864 MPANNKCLIF 10 Carbamidomethyl (C) _MPANNKC(Carbamidomethyl (C))LIF_ MPANNKC(1)LIF MPANNKC(120)LIF 0 1 0 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;ENST00000448973.6_1_16:684599-685202:-|nuORF;ENST00000456420.6_2_16:684599-686105:-|nuORF nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3021850585938 2 604.301744 1206.58893 0.47962 0.00028983 -0.6576 -0.00039739 -0.17798 -0.00010756 604.3020445427672 59.387 0.47158 53.272 53.024 53.496 -6.1147 83 25 4 0 0 0 3.1238E-05 3 38200 38035;38062;38200 123.45 94.369 1 90248000 40238 4250 26949 27476 47110;47111;47112 47112 427 -0.006095987264643554 MPAPEIVSY 9 Oxidation (M) _M(Oxidation (M))PAPEIVSY_ M(1)PAPEIVSY M(54)PAPEIVSY 0 0 1 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7472229003906 2 511.746793 1021.47903 0.60302 0.00030859 -0.8984 -0.00045975 -0.29538 -0.00015116 511.74658435960913 49.364 0.45376 49.364 49.152 49.606 0 54 20 5 0 0 0 0.03327 1 27113 27113 53.576 28.902 1 15197000 40239 7841 26950 27477 47113 47113 1331 -0.03084700793965567 MPAPEIVSY 9 Oxidation (M) _M(Oxidation (M))PAPEIVSY_ M(1)PAPEIVSY M(51)PAPEIVSY 0 0 1 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 ENSG00000169155|ENST00000373464|ZBTB43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7476501464844 2 511.746793 1021.47903 0.42232 0.00021612 2.1277 0.0010889 2.5501 0.001305 511.7477127373588 56.936 0.31937 50.959 50.719 51.038 -5.9769 28 18 2 0 0 0 0.038285 1 36317 36317 50.855 20.63 1 24849000 40240 7841 26950 27477 47114 47114 1331 -0.03084700793965567 MPAPHTSITM 10 2 Oxidation (M) _M(Oxidation (M))PAPHTSITM(Oxidation (M))_ M(1)PAPHTSITM(1) M(85)PAPHTSITM(85) 0 0 2 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2532958984375 2 559.254459 1116.49437 -0.092684 -5.1834E-05 -1.2985 -0.0007262 -1.3912 -0.00077803 559.2540417961613 20.889 0.21986 20.889 20.784 21.004 0 102 40 3 0 0 0 0.01132 1 10557 10557 85.272 48.766 1 2783000 40241 7661 26951 27478 47115 47115 1308;1309 -0.05922157268423689 MPAPHTSITM 10 2 Oxidation (M) _M(Oxidation (M))PAPHTSITM(Oxidation (M))_ 0 0 2 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 559.254459 1116.49437 0.34223 0.00019139 -0.88926 -0.00049732 -0.54703 -0.00030593 559.2541706442555 23.575 0.32032 20.748 20.595 20.915 -2.8273 -0.088678 -7.4747E-05 NaN 85.272 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 4424200 40242 7661 26951 27478 1308;1309 -0.05922157268423689 MPAPHTSITM 10 Oxidation (M) _MPAPHTSITM(Oxidation (M))_ MPAPHTSITM(1) M(-200)PAPHTSITM(200) 0 0 1 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.257080078125 2 551.257002 1100.49945 0.8429 0.00046466 -0.8871 -0.00048902 -0.044198 -2.4365E-05 551.2567051210467 33.356 0.32635 29.371 29.18 29.507 -3.9853 37 18 3 0 0 0 6.3397E-30 1 19087 19087 197.17 111.53 2 19170000 40243 7661 26951 27479 47116 47116 1308;1309 -0.04677853405837595 MPAPHTSITM 10 Oxidation (M) _M(Oxidation (M))PAPHTSITM_ M(1)PAPHTSITM M(100)PAPHTSITM(-100) 0 0 1 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2587890625 2 551.257002 1100.49945 1.0297 0.00056765 1.7001 0.00093722 2.7299 0.0015049 551.2581867578762 36.969 0.37117 32.686 32.472 32.843 -4.2835 35 22 2 0 0 0 0.0032765 1 21633 21633 103.75 58.049 2 6488400 40244 7661 26951 27479 47117 47117 1308;1309 -0.04677853405837595 MPAPHTSITM 10 Unmodified _MPAPHTSITM_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.7681274414062 2 543.259545 1084.50454 0.29739 0.00016156 0.69049 0.00037512 0.98788 0.00053668 543.2603789196326 46.528 0.2174 41.447 41.331 41.548 -5.0805 52 34 2 0 0 0 0.17211 1 28695 28695 36.127 12.979 1 63906000 40245 7661 26951 27480 47118 47118 -0.03433549543206027 MPAPPPKENAW 11 Unmodified _MPAPPPKENAW_ 0 0 0 nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B;ENST00000432307.1_1_X:110862947-110863739:-|nuORF;ENST00000432132.2_1_9:98909238-98910135:+|nuORF nc|ENSG00000063046|P23588-2|EIF4B nc|ENSG00000063046|P23588-2|EIF4B MSMS AL20221201_MKP_PDAC_01 4 619.3029174804688 2 619.305341 1236.59613 NaN NaN NaN NaN NaN NaN NaN 44.298 1 39.446 38.946 39.946 -4.852 0 0 0 0.032104 1 27024 27024 67.838 42.847 1 40246 855 26952 27481 47119 47119 -0.012705428543767994 MPARRLLLL 9 Unmodified _MPARRLLLL_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;nc|ENSG00000178607|O75460-2|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5669860839844 3 361.567078 1081.6794 1.1589 0.000419 1.7884 0.00064663 2.9473 0.0010656 361.90229776014826 92.81 0.27 86.634 86.5 86.77 -6.1757 39 17 3 0 0 0 0.4887 1 61371 61371 8.1555 0 1 17392000 40247 8762;15581 26953 27482 47120 47120 0.14183238384157448 MPARTVVF 8 Unmodified _MPARTVVF_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MSMS AL20221201_MKP_PDAC_01 4 460.7535400390625 2 460.754756 919.494958 NaN NaN NaN NaN NaN NaN NaN 50.949 1 45.3 44.8 45.8 -5.649 0 0 0 0.45566 1 32020 32020 45.7 26.261 1 40248 10272 26954 27483 47121 47121 0.03199050233581602 MPARWLTHL 9 Unmodified _MPARWLTHL_ 0 0 0 ENSG00000214160|ENST00000397676|ALG3;nc|ENSG00000214160|Q92685-2|ALG3;ENST00000485912.1_1_3:183960304-183960812:-|nuORF ENSG00000214160|ENST00000397676|ALG3 ENSG00000214160|ENST00000397676|ALG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8742980957031 3 375.5393 1123.59607 1.7011 0.00063882 -0.13781 -5.1752E-05 1.5633 0.00058707 375.5392476005959 86.37 0.74007 80.195 79.694 80.434 -6.1757 64 40 2 0 0 0 0.14 2 56978 56838;56978 21.59 14.488 1 15668000 40249 10483 26955 27484 47122;47123 47123 0.039215019362927706 MPATVFMLF 9 Oxidation (M) _MPATVFM(Oxidation (M))LF_ MPATVFM(1)LF M(-45)PATVFM(45)LF 0 0 1 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7642211914062 2 536.763932 1071.51331 1.1961 0.000642 -0.91707 -0.00049225 0.27898 0.00014975 536.7636129408254 100.5 0.13553 100.46 100.37 100.51 -0.04216 11 4 3 0 0 0 0.019979 1 55836 55836 63.563 31.446 2 6918300 40250 2634 26956 27485 47124 47124 456 -0.01958575906724036 MPATVFMLF 9 Oxidation (M) _MPATVFM(Oxidation (M))LF_ MPATVFM(1)LF M(-35)PATVFM(35)LF 0 0 1 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 ENSG00000109133|ENST00000504986|TMEM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.76416015625 2 536.763932 1071.51331 0.82671 0.00044375 0.57299 0.00030756 1.3997 0.00075131 536.763848312522 101.36 0.54408 95.184 95.018 95.562 -6.1757 38 29 2 0 0 0 0.03327 1 67992 67992 53.576 15.424 2 81022000 40251 2634 26956 27485 47125 47125 456 -0.01958575906724036 MPAVHTFSLF 10 Oxidation (M) _M(Oxidation (M))PAVHTFSLF_ M(1)PAVHTFSLF M(42)PAVHTFSLF 0 0 1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2891845703125 2 583.289159 1164.56377 1.0018 0.00058433 -2.0795 -0.0012129 -1.0777 -0.00062861 583.2880549452465 70.307 0.49775 70.343 70.094 70.592 0.035515 62 23 3 0 0 0 0.13184 1 38668 38668 42.095 15.211 1 3298400 40252 5337 26957 27486 47126 47126 978 -0.0119333025738797 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(67)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2911987304688 2 511.291171 1020.56779 0.97842 0.00050026 -1.4807 -0.00075709 -0.50232 -0.00025683 511.29050463552727 46.234 0.30158 46.234 46.068 46.369 0 23 14 2 0 0 0 0.016184 1 25230 25230 67.344 35.227 1 4067000 40253 1279 26958 27487 47127 47127 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(97)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2911987304688 2 511.291171 1020.56779 0.38123 0.00019492 -0.60847 -0.00031111 -0.22724 -0.00011618 511.290897242349 46.451 0.36996 46.115 45.939 46.309 -0.33664 42 18 3 0 0 0 0.0083087 2 24820 24820;24927 97.075 58.923 1 26597000 40254 1279 26958 27487 47128;47129 47128 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(89)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2914123535156 2 511.291171 1020.56779 0.4547 0.00023249 0.067855 3.4694E-05 0.52256 0.00026718 511.2912396560036 46.838 0.37045 46.501 46.29 46.661 -0.33664 48 18 4 0 0 0 0.0086179 2 25153 25052;25153 89.427 57.31 1 24073000 40255 1279 26958 27487 47130;47131 47131 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(64)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2920532226562 2 511.291171 1020.56779 0.9575 0.00048956 -0.52425 -0.00026805 0.43325 0.00022152 511.29094587873675 46.186 0.29882 46.153 45.968 46.267 -0.033417 30 13 3 0 0 0 0.019303 1 24793 24793 64.236 44.797 1 6601900 40256 1279 26958 27487 47132 47132 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(51)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.29296875 2 511.291171 1020.56779 1.4998 0.00076681 -0.14096 -7.2074E-05 1.3588 0.00069474 511.2910653448656 46.566 0.28298 46.532 46.41 46.693 -0.033417 35 13 3 0 0 0 0.038285 1 25033 25033 50.855 26.181 1 7949100 40257 1279 26958 27487 47133 47133 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(74)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2909545898438 2 511.291171 1020.56779 0.57865 0.00029586 -0.27963 -0.00014297 0.29902 0.00015289 511.2908969538104 51.491 0.38152 45.842 45.64 46.021 -5.649 30 23 2 0 0 0 0.012148 1 32336 32336 74.423 40.235 1 35418000 40258 1279 26958 27487 47134 47134 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(44)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MSMS AL20221201_MKP_PDAC_01 4 511.25244140625 2 511.291171 1020.56779 NaN NaN NaN NaN NaN NaN NaN 51.932 1 46.197 45.697 46.697 -5.7345 0 0 0 0.096036 1 32731 32731 44.407 21.259 1 40259 1279 26958 27487 47135 47135 215 0.05832759236352558 MPAVKAIIY 9 Oxidation (M) _M(Oxidation (M))PAVKAIIY_ M(1)PAVKAIIY M(57)PAVKAIIY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MSMS AL20221201_MKP_PDAC_01 4 511.2924499511719 2 511.291171 1020.56779 NaN NaN NaN NaN NaN NaN NaN 51.988 1 46.253 45.753 46.753 -5.7345 0 0 0 0.050352 1 32776 32776 57.471 31.13 1 40260 1279 26958 27487 47136 47136 215 0.05832759236352558 MPAVKAIIY 9 Unmodified _MPAVKAIIY_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2936706542969 2 503.293714 1004.57287 1.3244 0.00066658 -1.2508 -0.00062954 0.073585 3.7035E-05 503.29269381428395 62.362 0.60211 56.187 55.984 56.586 -6.1757 87 31 4 0 0 0 0.013323 3 40273 40138;40273;40413 71.134 57.626 1 142560000 40261 1279 26958 27488 47137;47138;47139 47138 0.07077063098972758 MPAVKAIIY 9 Unmodified _MPAVKAIIY_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.293714 1004.57287 -0.42148 -0.00021213 0.37479 0.00018863 -0.046696 -2.3502E-05 503.29352148354303 56.91 0.25862 56.424 56.265 56.523 -0.48554 0.11875 0.0012596 NaN 71.134 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2909800 40262 1279 26958 27488 0.07077063098972758 MPAVKAIIYQY 11 Oxidation (M) _M(Oxidation (M))PAVKAIIYQY_ M(1)PAVKAIIYQY M(48)PAVKAIIYQY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.8523559570312 2 656.852124 1311.68969 0.50805 0.00033372 -0.31413 -0.00020634 0.19392 0.00012738 656.8521020630005 53.626 0.31565 53.174 52.984 53.3 -0.45173 64 15 6 0 0 0 0.064513 2 28965 28965;29066 47.749 36.108 1 63334000 40263 1279 26959 27489 47140;47141 47140 215 0.0463175652805603 MPAVKAIIYQY 11 Oxidation (M) _M(Oxidation (M))PAVKAIIYQY_ M(1)PAVKAIIYQY M(48)PAVKAIIYQY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.8523559570312 2 656.852124 1311.68969 0.43169 0.00028356 -0.49502 -0.00032515 -0.063331 -4.1599E-05 656.8519396147462 53.895 0.30253 53.429 53.265 53.567 -0.46664 60 14 5 0 0 0 0.064513 1 29174 29174 47.749 42.452 1 48123000 40264 1279 26959 27489 47142 47142 215 0.0463175652805603 MPAVKAIIYQY 11 Oxidation (M) _M(Oxidation (M))PAVKAIIYQY_ M(1)PAVKAIIYQY M(79)PAVKAIIYQY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.8532104492188 2 656.852124 1311.68969 0.4046 0.00026576 -0.13786 -9.0554E-05 0.26674 0.00017521 656.8521733165938 53.259 0.32397 53.195 53.002 53.326 -0.063423 64 15 5 0 0 0 0.0029835 2 28826 28826;28925 78.728 67.088 1 97007000 40265 1279 26959 27489 47143;47144 47143 215 0.0463175652805603 MPAVKAIIYQY 11 Oxidation (M) _M(Oxidation (M))PAVKAIIYQY_ M(1)PAVKAIIYQY M(63)PAVKAIIYQY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.85205078125 2 656.852124 1311.68969 0.11312 7.4306E-05 -0.5941 -0.00039024 -0.48098 -0.00031593 656.8518831027668 53.516 0.26276 53.453 53.326 53.589 -0.063423 52 14 6 0 0 0 0.014934 1 29030 29030 62.573 57.676 1 158630000 40266 1279 26959 27489 47145 47145 215 0.0463175652805603 MPAVKAIIYQY 11 Oxidation (M) _M(Oxidation (M))PAVKAIIYQY_ M(1)PAVKAIIYQY M(100)PAVKAIIYQY 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.8527221679688 2 656.852124 1311.68969 0.85767 0.00056336 -0.70917 -0.00046582 0.1485 9.7546E-05 656.8517358804237 59.317 1.3465 53.242 52.734 54.081 -6.0745 150 74 4 0 0 0 1.3587E-06 7 37775 37775;37911;38045;38186;38319;38470;38624 103.35 103.35 1 133450000 40267 1279 26959 27489 47146;47147;47148;47149;47150;47151;47152 47146 215 0.0463175652805603 MPAVKAIIYQY 11 Unmodified _MPAVKAIIYQY_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.854248046875 2 648.854667 1295.69478 0.53768 0.00034887 -0.53228 -0.00034537 0.0053992 3.5033E-06 648.8541710014807 62.622 0.37762 62.6 62.413 62.791 -0.021614 69 19 4 0 0 0 0.10976 2 34188 34188;34290 60.074 43.925 1 46949000 40268 1279 26959 27490 47153;47154 47153 0.058760603906875986 MPAVKAIIYQY 11 Unmodified _MPAVKAIIYQY_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8553466796875 2 648.854667 1295.69478 0.89211 0.00057885 -0.26891 -0.00017448 0.62321 0.00040437 648.8545667959985 74.799 1.7962 68.623 67.724 69.521 -6.1757 309 95 4 0 0 0 4.6903E-06 9 48557 48441;48557;48668;48792;48916;49032;49153;49276;49401 118.07 101.92 1 186510000 40269 1279 26959 27490 47155;47156;47157;47158;47159;47160;47161;47162;47163 47156 0.058760603906875986 MPCEALVRM 9 Carbamidomethyl (C),Oxidation (M) _MPC(Carbamidomethyl (C))EALVRM(Oxidation (M))_ MPC(1)EALVRM MPCEALVRM(1) MPC(65)EALVRM M(-65)PCEALVRM(65) 0 1 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 561.76171875 2 561.758855 1121.50316 NaN NaN NaN NaN NaN NaN NaN 40.309 1 35.78 35.28 36.28 -4.5294 0 0 0 0.032808 1 24056 24056 65.235 36.153 2 40270 349 26960 27491 47164 47164 14 40 -0.052735069036089044 MPCKSVVF 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF M(1)PCKSVVF MPC(71)KSVVF M(71)PCKSVVF 0 1 1 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2371215820312 2 492.238081 982.461609 0.011938 5.8762E-06 -0.27295 -0.00013435 -0.26101 -0.00012848 492.2381521768268 35.732 0.34212 35.732 35.554 35.896 0 47 16 4 0 0 0 0.19792 2 18849 18849;18953 70.716 43.832 1 11968000 40271 4951;8967 26961 27492 47165;47166 47165 514 903 -0.030323196006179387 MPCKSVVF 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF M(1)PCKSVVF MPC(64)KSVVF M(64)PCKSVVF 0 1 1 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2377319335938 2 492.238081 982.461609 -0.26678 -0.00013132 -0.91103 -0.00044844 -1.1778 -0.00057976 492.2379018254668 35.856 0.40014 35.633 35.393 35.793 -0.2224 53 17 4 0 0 0 0.23628 2 18820 18713;18820 64.236 33.6 1 24097000 40272 4951;8967 26961 27492 47167;47168 47168 514 903 -0.030323196006179387 MPCKSVVF 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF M(1)PCKSVVF MPC(63)KSVVF M(63)PCKSVVF 0 1 1 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2379150390625 2 492.238081 982.461609 0.84437 0.00041563 -0.52729 -0.00025955 0.31708 0.00015608 492.2381433860379 39.397 0.85456 34.946 34.565 35.42 -4.4509 172 53 5 0 0 0 0.24723 4 23190 23190;23324;23454;23584 62.573 38.552 1 515010000 40273 4951;8967 26961 27492 47169;47170;47171;47172 47169 514 903 -0.030323196006179387 MPCKSVVF 8 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF M(1)PCKSVVF MPC(54)KSVVF M(54)PCKSVVF 0 1 1 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 983.4708251953125 1 983.468886 982.461609 0.86453 0.00085024 0.089884 8.8398E-05 0.95442 0.00093864 983.4687596351332 39.484 0.40668 35.033 34.75 35.156 -4.4509 33 24 2 0 0 0 0.31379 2 23361 23361;23491 53.833 34.576 1 7396800 40274 4951;8967 26961 27492 47173;47174 47173 514 903 -0.030323196006179387 MPCKSVVF 8 Carbamidomethyl (C) _MPC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF MPC(63)KSVVF 0 1 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2410888671875 2 484.240624 966.466695 1.361 0.00065906 -0.97323 -0.00047128 0.38779 0.00018779 484.24036767623437 47.424 0.83541 42.19 41.793 42.628 -5.2339 213 54 5 0 0 0 0.24723 4 29333 29205;29333;29466;29593 62.573 39.836 1 1163700000 40275 4951;8967 26961 27493 47175;47176;47177;47178 47176 514 -0.01788015737997739 MPCKSVVF 8 Carbamidomethyl (C) _MPC(Carbamidomethyl (C))KSVVF_ MPC(1)KSVVF MPC(54)KSVVF 0 1 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 967.4738159179688 1 967.473971 966.466695 1.1164 0.00108 0.35945 0.00034776 1.4758 0.0014278 967.4741570216527 47.424 0.40731 42.19 42.013 42.42 -5.2339 34 23 2 0 0 0 0.31379 1 29477 29477 53.833 29.159 1 8700300 40276 4951;8967 26961 27493 47179 47179 514 -0.01788015737997739 MPCLGHTF 8 Carbamidomethyl (C) _MPC(Carbamidomethyl (C))LGHTF_ MPC(1)LGHTF MPC(86)LGHTF 0 1 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MSMS AL20221201_MKP_PDAC_01 4 481.7156066894531 2 481.714773 961.414993 NaN NaN NaN NaN NaN NaN NaN 53.73 1 47.926 47.426 48.426 -5.8042 0 0 0 0.18108 1 33990 33990 86.121 69.179 1 40277 10506 26962 27494 47180 47180 941 -0.06725759431901679 MPCQALVRM 9 Carbamidomethyl (C) _MPC(Carbamidomethyl (C))QALVRM_ MPC(1)QALVRM MPC(100)QALVRM 0 1 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2698974609375 2 553.26939 1104.52423 0.59669 0.00033013 0.85854 0.000475 1.4552 0.00080513 553.2699505022052 53.257 0.40114 47.453 47.216 47.617 -5.8042 36 24 2 0 0 0 0.00856 1 33651 33651 100.37 62.22 1 22521000 40278 8497 26963 27495 47181 47181 818 -0.023854968040950553 MPCQHQLNCF 10 2 Carbamidomethyl (C) _MPC(Carbamidomethyl (C))QHQLNC(Carbamidomethyl (C))F_ MPC(1)QHQLNC(1)F MPC(85)QHQLNC(85)F 0 2 0 ENST00000521144.1_1_8:94932150-94934336:+|nuORF;ENST00000518573.1_1_8:94929413-94934336:+|nuORF;ENST00000517764.1_1_8:94930131-94934336:+|nuORF;ENST00000518827.1_1_8:94934052-94934336:+|nuORF;ENST00000297598.4_1_8:94929214-94934336:+|nuORF;ENST00000520728.5_1_8:94929177-94934336:+|nuORF ENST00000521144.1_1_8:94932150-94934336:+|nuORF ENST00000521144.1_1_8:94932150-94934336:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.7760009765625 2 667.775567 1333.53658 0.39763 0.00026553 0.66702 0.00044542 1.0646 0.00071094 667.7759971824919 43.473 0.28533 38.708 38.633 38.919 -4.7648 30 17 2 0 0 0 0.01132 1 26427 26427 85.272 74.473 1 9670400 40279 11525 26964 27496 47182 47182 967;968 -0.11684505131711376 MPDDLLTTL 9 Oxidation (M) _M(Oxidation (M))PDDLLTTL_ M(1)PDDLLTTL M(89)PDDLLTTL 0 0 1 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7573852539062 2 517.757358 1033.50016 0.72671 0.00037626 -1.3037 -0.00067498 -0.57695 -0.00029872 517.7567723851319 73.368 1.0088 73.368 72.985 73.994 0 178 47 6 0 0 0 0.0086179 3 40931 40724;40822;40931 89.427 35.851 1 147420000 40280 4055 26965 27497 47183;47184;47185 47185 725 -0.015247354851226191 MPDDLLTTL 9 Oxidation (M) _M(Oxidation (M))PDDLLTTL_ M(1)PDDLLTTL M(44)PDDLLTTL 0 0 1 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.757080078125 2 517.757358 1033.50016 0.62361 0.00032288 -0.83159 -0.00043056 -0.20798 -0.00010768 517.7570333009533 73.9 0.5482 73.424 73.118 73.667 -0.47588 76 25 4 0 0 0 0.052168 2 40363 40363;40468 44.407 14.182 1 7223700 40281 4055 26965 27497 47186;47187 47186 725 -0.015247354851226191 MPDDLLTTL 9 Oxidation (M) _M(Oxidation (M))PDDLLTTL_ M(1)PDDLLTTL M(42)PDDLLTTL 0 0 1 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7579345703125 2 517.757358 1033.50016 0.28369 0.00014688 1.0747 0.00055645 1.3584 0.00070333 517.757983597817 73.363 0.40484 73.407 73.207 73.612 0.043976 43 17 3 0 0 0 0.06187 1 40501 40501 42.095 23.96 1 3590200 40282 4055 26965 27497 47188 47188 725 -0.015247354851226191 MPDDLLTTL 9 Oxidation (M) _M(Oxidation (M))PDDLLTTL_ M(1)PDDLLTTL M(74)PDDLLTTL 0 0 1 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7579345703125 2 517.757358 1033.50016 1.1199 0.00057986 -0.94548 -0.00048953 0.17446 9.0327E-05 517.7573050882719 81.274 0.88744 75.098 74.77 75.657 -6.1757 128 50 4 0 0 0 0.012148 2 53455 53322;53455 74.423 45.936 1 103140000 40283 4055 26965 27497 47189;47190 47190 725 -0.015247354851226191 MPDDLLTTL 9 Oxidation (M) _M(Oxidation (M))PDDLLTTL_ M(1)PDDLLTTL M(110)PDDLLTTL 0 0 1 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1034.509765625 1 1034.50744 1033.50016 0.90259 0.00093374 -0.098893 -0.00010231 0.8037 0.00083143 1034.5072723492397 81.294 0.38135 75.118 74.961 75.343 -6.1757 34 21 2 0 0 0 0.0067112 1 53497 53497 112.59 41.46 1 17920000 40284 4055 26965 27497 47191 47191 725 -0.015247354851226191 MPDDLLTTL 9 Unmodified _MPDDLLTTL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7599487304688 2 509.759901 1017.50525 0.33454 0.00017054 -0.22735 -0.0001159 0.10719 5.4641E-05 509.75996514634267 82.807 0.4325 82.807 82.585 83.018 0 69 19 5 0 0 0 0.14602 1 45951 45951 28.487 0 1 11017000 40285 4055 26965 27498 47192 47192 -0.002804316225024195 MPDDLLTTL 9 Unmodified _MPDDLLTTL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7604675292969 2 509.759901 1017.50525 0.68166 0.00034748 -0.10226 -5.2126E-05 0.5794 0.00029536 509.76003598794705 91.081 0.72943 84.906 84.56 85.29 -6.1757 122 42 4 0 0 0 0.14602 2 60100 60100;60231 28.487 12.64 1 193280000 40286 4055 26965 27498 47193;47194 47193 -0.002804316225024195 MPDDLLTTL 9 Unmodified _MPDDLLTTL_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 509.759901 1017.50525 1.2314 0.00062774 1.4275 0.00072768 2.6589 0.0013554 509.76005049267485 82.713 0.23141 82.775 82.637 82.869 0.062004 -0.018683 0.0013134 NaN 28.487 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2028900 40287 4055 26965 27498 -0.002804316225024195 MPDDSYMVDY 10 2 Oxidation (M) _M(Oxidation (M))PDDSYM(Oxidation (M))VDY_ M(1)PDDSYM(1)VDY M(46)PDDSYM(46)VDY 0 0 2 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.2266845703125 2 634.228304 1266.44206 -0.040753 -2.5846E-05 0.13108 8.3133E-05 0.090324 5.7286E-05 634.2283064140646 40.215 0.38234 40.215 40.03 40.412 0 33 18 2 0 0 0 0.1028 1 21612 21612 46.021 42.077 1 2448600 40288 5337 26966 27499 47195 47195 979;980 -0.18050785192667718 MPDEATPHYF 10 Unmodified _MPDEATPHYF_ 0 0 0 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MSMS AL20221201_MKP_PDAC_01 4 604.2603759765625 2 604.258056 1206.50156 NaN NaN NaN NaN NaN NaN NaN 52.666 1 46.932 46.432 47.432 -5.7345 0 0 0 0.014758 1 33247 33247 69.105 54.267 1 40289 2929 26967 27500 47196 47196 -0.09343101396370912 MPDEGVMVTKF 11 2 Oxidation (M) _M(Oxidation (M))PDEGVM(Oxidation (M))VTKF_ M(1)PDEGVM(1)VTKF M(43)PDEGVM(43)VTKF 0 0 2 nc|ENSG00000136689|P18510-4|IL1RN;nc|ENSG00000136689|P18510-2|IL1RN;ENSG00000136689|ENST00000409930|IL1RN;nc|ENSG00000136689|P18510-3|IL1RN nc|ENSG00000136689|P18510-4|IL1RN nc|ENSG00000136689|P18510-4|IL1RN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.2922973632812 2 643.293782 1284.57301 NaN NaN NaN NaN NaN NaN NaN 40.623 1 40.623 40.123 41.123 0 0 0 0 0.14852 1 21849 21849 42.835 32.011 1 40290 4843 26968 27501 47197 47197 876;877 -0.05789349753990791 MPDELLTSL 9 Oxidation (M) _M(Oxidation (M))PDELLTSL_ M(1)PDELLTSL M(51)PDELLTSL 0 0 1 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7578735351562 2 517.757358 1033.50016 -0.013059 -6.7616E-06 -0.38056 -0.00019704 -0.39362 -0.0002038 517.7571776275877 70.883 0.33572 70.883 70.755 71.09 0 65 34 2 0 0 0 0.038285 1 39519 39519 50.855 27.707 1 2920800 40291 3369 26969 27502 47198 47198 598 -0.015247354851226191 MPDGIRREEF 10 Unmodified _MPDGIRREEF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2050170898438 3 417.204645 1248.59211 0.67922 0.00028337 0.040357 1.6837E-05 0.71958 0.00030021 417.2045315430444 38.74 0.18868 34.289 34.191 34.379 -4.4509 13 11 2 0 0 0 0.5543 1 22916 22916 13.519 7.2843 1 11363000 40292 9907 26970 27503 47199 47199 -0.02224632348088562 MPDGIRREEF 10 Unmodified _MPDGIRREEF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 417.204645 1248.59211 -0.71637 -0.00029887 -0.047611 -1.9864E-05 -0.76398 -0.00031873 417.2039880198634 34.31 0.079441 34.31 34.247 34.326 0 0.010703 -9.5563E-05 NaN 13.519 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 806160 40293 9907 26970 27503 -0.02224632348088562 MPDHTDVSL 9 Oxidation (M) _M(Oxidation (M))PDHTDVSL_ M(1)PDHTDVSL M(64)PDHTDVSL 0 0 1 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7296142578125 2 515.729132 1029.44371 0.81565 0.00042065 -0.5251 -0.00027081 0.29055 0.00014984 515.7290520006384 34.375 0.69535 30.28 29.987 30.683 -4.0951 104 40 3 0 0 0 0.019303 2 19704 19704;19825 64.236 30.134 1 51479000 40294 5023 26971 27504 47200;47201 47200 918 -0.06983363321796787 MPDHTDVSL 9 Unmodified _MPDHTDVSL_ 0 0 0 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.731201171875 2 507.731674 1013.4488 0.58801 0.00029855 -0.52241 -0.00026524 0.065598 3.3306E-05 507.731415167465 43.348 0.77563 38.583 38.304 39.079 -4.7648 134 51 3 0 0 0 0.070838 3 26216 26216;26344;26482 39.957 10.082 1 202100000 40295 5023 26971 27505 47202;47203;47204 47202 -0.057390594591765876 MPDIIIKAL 9 Unmodified _MPDIIIKAL_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000463808.1_1_16:2122597-2124590:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3081665039062 2 507.306821 1012.59909 0.76315 0.00038715 -0.19427 -9.8557E-05 0.56888 0.0002886 507.30673649876263 92.437 0.43153 86.262 86.069 86.5 -6.1757 41 25 2 0 0 0 0.029718 2 61167 61043;61167 55.503 28.337 1 12710000 40296 16096;16097 26972 27506 47205;47206 47206 0.09329332270431223 MPDLENRVL 9 Oxidation (M) _M(Oxidation (M))PDLENRVL_ M(1)PDLENRVL M(83)PDLENRVL 0 0 1 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7813720703125 2 551.781699 1101.54884 0.61321 0.00033836 -0.28783 -0.00015882 0.32538 0.00017954 551.7814280196843 42.263 0.47575 42.263 42.068 42.544 0 53 23 3 0 0 0 0.0094097 2 22834 22834;22953 82.529 45.084 1 13960000 40297 9407 26973 27507 47207;47208 47207 1548 0.002131778746161217 MPDLENRVL 9 Oxidation (M) _M(Oxidation (M))PDLENRVL_ M(1)PDLENRVL M(42)PDLENRVL 0 0 1 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7817993164062 2 551.781699 1101.54884 1.0036 0.00055379 0.11112 6.1316E-05 1.1148 0.00061511 551.7817744803904 48.423 0.36062 43.189 43.005 43.365 -5.2339 33 21 2 0 0 0 0.062454 1 30089 30089 41.956 24.843 1 16710000 40298 9407 26973 27507 47209 47209 1548 0.002131778746161217 MPDLENRVL 9 Unmodified _MPDLENRVL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.783447265625 2 543.784241 1085.55393 0.826 0.00044917 3.0755 0.0016724 3.9015 0.0021216 543.7838194331608 59.365 0.38464 53.25 53.188 53.572 -6.1147 48 20 3 0 0 0 0.07087 1 38099 38099 39.95 15.276 1 79553000 40299 9407 26973 27508 47210 47210 0.0145748173724769 MPDLPNVGL 9 Unmodified _MPDLPNVGL_ 0 0 0 nc|ENSG00000134014|Q9H9T3-4|ELP3;nc|ENSG00000134014|Q9H9T3-5|ELP3;nc|ENSG00000134014|Q9H9T3-2|ELP3;ENSG00000134014|ENST00000256398|ELP3 nc|ENSG00000134014|Q9H9T3-4|ELP3 nc|ENSG00000134014|Q9H9T3-4|ELP3 MSMS AL20221201_MKP_PDAC_01 4 478.2516174316406 2 478.249503 954.484453 NaN NaN NaN NaN NaN NaN NaN 84.759 1 78.583 78.083 79.083 -6.1757 0 0 0 0.083082 1 55784 55784 47.749 21.407 1 40300 4551 26974 27509 47211 47211 0.005390227884959131 MPDPKTFKQHF 11 Oxidation (M) _M(Oxidation (M))PDPKTFKQHF_ M(1)PDPKTFKQHF M(45)PDPKTFKQHF 0 0 1 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.5647277832031 3 464.564062 1390.67036 0.20928 9.7224E-05 0.28747 0.00013355 0.49675 0.00023077 464.5641842593143 28.357 0.4092 28.386 28.134 28.544 0.029564 40 16 4 0 0 0 0.078696 1 14743 14743 44.945 38.321 1 6016600 40301 3559 26975 27510 47212 47212 629 -0.009351997628527897 MPDPKTFKQHF 11 Unmodified _MPDPKTFKQHF_ 0 0 0 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2329406738281 3 459.232424 1374.67544 0.006796 3.121E-06 1.2175 0.0005591 1.2243 0.00056222 459.23306030300785 37.161 0.40854 37.183 36.942 37.35 0.021545 37 18 3 0 0 0 0.42115 1 19696 19696 20.411 19.196 1 1831500 40302 3559 26975 27511 47213 47213 0.003091040997787786 MPDPKTFKQHF 11 Unmodified _MPDPKTFKQHF_ 0 0 0 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2330322265625 3 459.232424 1374.67544 1.1124 0.00051085 -0.65891 -0.00030259 0.45348 0.00020825 459.2317024331875 41.602 0.50827 36.994 36.754 37.262 -4.6079 82 33 4 0 0 0 0.16638 2 24878 24878;25012 34.79 29.592 1 33707000 40303 3559 26975 27511 47214;47215 47214 0.003091040997787786 MPDQPKLTI 9 Unmodified _MPDQPKLTI_ 0 0 0 REV__ENSG00000198934|ENST00000361470|MAGEE1 REV__ENSG00000198934|ENST00000361470|MAGEE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.78369140625 2 521.78371 1041.55287 0.66471 0.00034684 0.59296 0.00030939 1.2577 0.00065623 521.7839960740865 44.288 0.4397 39.436 39.249 39.688 -4.852 61 31 3 0 0 0 0.047196 1 27114 27114 46.021 3.9264 1 13380000 + 40304 24103 26976 27512 47216 47216 0.03375267368346613 MPDQRVIYY 9 Oxidation (M) _M(Oxidation (M))PDQRVIYY_ M(1)PDQRVIYY M(62)PDQRVIYY 0 0 1 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7894897460938 2 600.789524 1199.56449 0.11532 6.9282E-05 -0.29212 -0.0001755 -0.1768 -0.00010622 600.789547255634 39.263 0.54391 39.263 38.88 39.424 0 47 25 2 0 0 0 0.021948 1 21003 21003 61.602 40.731 1 4374900 40305 6151 26977 27513 47217 47217 1097 -0.027305356083161314 MPDRPRLGL 9 Unmodified _MPDRPRLGL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1998901367188 3 352.199054 1053.57533 1.2555 0.00044219 0.87906 0.0003096 2.1346 0.00075179 352.1994313186509 44.283 0.46011 39.431 39.172 39.632 -4.852 57 32 2 0 0 0 0.32871 2 27048 26904;27048 15.248 5.8654 1 23204000 40306 319 26978 27514 47218;47219 47219 0.05068911556622879 MPDSTTPVV 9 Oxidation (M) _M(Oxidation (M))PDSTTPVV_ M(1)PDSTTPVV M(57)PDSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.4482421875 1 962.449924 961.442648 -0.48558 -0.00046735 0.034204 3.292E-05 -0.45138 -0.00043443 962.4495508297887 33.241 0.29354 33.241 33.109 33.402 0 20 14 2 0 0 0 0.026094 1 17388 17388 57.471 41.624 1 1050600 40307 7922 26979 27515 47220 47220 1346 -0.039615776906885 MPDSTTPVV 9 Oxidation (M) _M(Oxidation (M))PDSTTPVV_ M(1)PDSTTPVV M(94)PDSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2289123535156 2 481.7286 961.442648 -0.27737 -0.00013362 -0.72037 -0.00034702 -0.99775 -0.00048064 481.72841206562936 33.544 0.36297 33.544 33.365 33.728 0 46 32 2 0 0 0 0.0081063 2 17577 17500;17577 93.883 69.21 1 13103000 40308 7922 26979 27515 47221;47222 47222 1346 -0.039615776906885 MPDSTTPVV 9 Oxidation (M) _M(Oxidation (M))PDSTTPVV_ M(1)PDSTTPVV M(71)PDSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7294006347656 2 481.7286 961.442648 0.88679 0.00042719 0.27564 0.00013278 1.1624 0.00055997 481.7285179913712 39.048 0.35472 34.597 34.379 34.734 -4.4509 39 22 2 0 0 0 0.013323 1 23087 23087 71.134 47.985 1 11727000 40309 7922 26979 27515 47223 47223 1346 -0.039615776906885 MPDSTTPVV 9 Oxidation (M) _M(Oxidation (M))PDSTTPVV_ M(1)PDSTTPVV M(85)PDSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7288513183594 2 481.7286 961.442648 0.9668 0.00046573 1.1351 0.00054683 2.1019 0.0010126 481.7289003770934 39.282 0.42199 34.831 34.734 35.156 -4.4509 43 25 2 0 0 0 0.0090851 2 23403 23275;23403 85.357 55.132 1 16184000 40310 7922 26979 27515 47224;47225 47225 1346 -0.039615776906885 MPDSTTPVV 9 Unmodified _MPDSTTPVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7314147949219 2 473.731143 945.447733 1.1185 0.00052989 -0.75512 -0.00035772 0.36342 0.00017216 473.7309255557729 49.623 0.56886 44.084 43.775 44.344 -5.5391 60 35 3 0 0 0 0.042911 3 31036 30906;31036;31183 48.346 26.599 1 47467000 40311 7922 26979 27516 47226;47227;47228 47227 -0.027172738280796693 MPDSTTPVV 9 Unmodified _MPDSTTPVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.4567260742188 1 946.45501 945.447733 0.60739 0.00057487 -0.0781 -7.3918E-05 0.52929 0.00050095 946.4550971208301 49.591 0.40354 44.052 43.94 44.344 -5.5391 32 25 2 0 0 0 0.0021514 2 31115 30978;31115 131.3 89.203 1 23322000 40312 7922 26979 27516 47229;47230 47230 -0.027172738280796693 MPDVVVRSF 9 Oxidation (M) _M(Oxidation (M))PDVVVRSF_ M(1)PDVVVRSF M(40)PDVVVRSF 0 0 1 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2720947265625 2 533.273509 1064.53247 NaN NaN NaN NaN NaN NaN NaN 44.927 1 44.606 44.106 45.106 -0.32096 0 0 0 0.12101 1 23980 23980 40.239 29.415 1 40313 6734 26980 27517 47231 47231 1169 0.00278096708530029 MPDVVVRSF 9 Unmodified _MPDVVVRSF_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.27490234375 2 525.276052 1048.53755 0.4265 0.00022403 -0.58895 -0.00030936 -0.16245 -8.5329E-05 525.2757084290724 62.084 0.29417 55.908 55.708 56.002 -6.1757 31 16 2 0 0 0 0.0094097 2 39944 39944;40073 82.529 44.378 1 56569000 40314 6734 26980 27518 47232;47233 47232 0.015224005711615973 MPEANGHLKY 10 Unmodified _MPEANGHLKY_ 0 0 0 ENSG00000163617|ENST00000295878|CCDC191;ENST00000463695.1_1_3:113758312-113775320:-|nuORF;ENST00000460813.5_1_3:113755834-113765458:-|nuORF ENSG00000163617|ENST00000295878|CCDC191 ENSG00000163617|ENST00000295878|CCDC191 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.1915893554688 3 387.190336 1158.54918 1.2655 0.00048999 0.31816 0.00012319 1.5837 0.00061318 387.19049079998246 30.306 0.23667 26.809 26.678 26.915 -3.497 16 11 2 0 0 0 0.16361 1 17101 17101 32.898 22.747 1 10015000 40315 7029 26981 27519 47234 47234 -0.02375402405505156 MPEASGPKF 9 Oxidation (M) _M(Oxidation (M))PEASGPKF_ M(1)PEASGPKF M(58)PEASGPKF 0 0 1 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2313842773438 2 490.23131 978.448068 -0.55249 -0.00027085 0.09139 4.4802E-05 -0.4611 -0.00022605 490.23140220733865 27.496 0.33843 27.496 27.362 27.7 0 30 16 3 0 0 0 0.025842 1 14139 14139 57.722 30.838 1 5338500 40316 9905 26982 27520 47235 47235 1591 -0.042018541082029515 MPEASGPKF 9 Oxidation (M) _M(Oxidation (M))PEASGPKF_ M(1)PEASGPKF M(83)PEASGPKF 0 0 1 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2305297851562 2 490.23131 978.448068 -0.60222 -0.00029523 1.4794 0.00072524 0.87716 0.00043001 490.2314266148529 27.845 0.44864 27.845 27.552 28.001 0 57 21 4 0 0 0 0.0094097 1 14340 14340 82.529 46.485 1 6849800 40317 9905 26982 27520 47236 47236 1591 -0.042018541082029515 MPEASGPKF 9 Unmodified _MPEASGPKF_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2346801757812 2 482.233853 962.453153 0.36026 0.00017373 -0.36948 -0.00017818 -0.0092223 -4.4473E-06 482.23389931519574 39.892 0.2889 35.362 35.155 35.444 -4.5294 33 18 2 0 0 0 0.011671 1 23647 23647 75.761 47.274 1 31953000 40318 9905 26982 27521 47237 47237 -0.029575502455941205 MPEDLVEAL 9 Oxidation (M) _M(Oxidation (M))PEDLVEAL_ M(1)PEDLVEAL M(89)PEDLVEAL 0 0 1 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7489013671875 2 516.749533 1031.48451 0.35754 0.00018476 -0.92424 -0.0004776 -0.56671 -0.00029284 516.7492932893618 66.064 0.50719 66.064 65.864 66.372 0 81 24 4 0 0 0 0.0086179 2 36786 36786;36886 89.427 47.332 1 15089000 40319 4536 26983 27522 47238;47239 47238 826 -0.02997022002182348 MPEDLVEAL 9 Oxidation (M) _M(Oxidation (M))PEDLVEAL_ M(1)PEDLVEAL M(48)PEDLVEAL 0 0 1 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.5458984375 1 1032.49179 1031.48451 -0.29182 -0.0003013 -0.21578 -0.00022279 -0.5076 -0.00052409 1032.49171358817 66.022 0.37495 66.022 65.864 66.239 0 32 18 2 0 0 0 0.062767 1 36938 36938 48.346 26.599 1 2067700 40320 4536 26983 27522 47240 47240 826 -0.02997022002182348 MPEDLVEAL 9 Unmodified _MPEDLVEAL_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7518920898438 2 508.752075 1015.4896 0.36096 0.00018364 -0.2779 -0.00014138 0.08306 4.2257E-05 508.75189622723724 75.914 0.27473 75.914 75.746 76.021 0 31 12 3 0 0 0 0.23158 1 42226 42226 20.454 9.6297 1 2094500 40321 4536 26983 27523 47241 47241 -0.017527181395621483 MPEDVKNFY 9 Oxidation (M) _M(Oxidation (M))PEDVKNFY_ M(1)PEDVKNFY M(110)PEDVKNFY 0 0 1 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2;ENST00000587511.1_1_18:34387792-34408730:-|nuORF nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7607421875 2 579.760432 1157.50631 0.56784 0.00032921 -0.50109 -0.00029051 0.066752 3.87E-05 579.7602821816503 36.903 0.46876 36.903 36.588 37.056 0 80 22 4 0 0 0 0.0086904 2 19591 19490;19591 107.19 80.303 1 36334000 40322 4639 26984 27524 47242;47243 47243 840 -0.06614217253604693 MPEDVKNFY 9 Unmodified _MPEDVKNFY_ 0 0 0 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2;ENST00000587511.1_1_18:34387792-34408730:-|nuORF nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7615356445312 2 571.762975 1141.5114 -0.048883 -2.7949E-05 -0.4076 -0.00023305 -0.45648 -0.000261 571.7626325194308 45.063 0.28667 45.063 44.943 45.23 0 24 14 2 0 0 0 0.05447 1 24527 24527 43.858 16.229 1 7624800 40323 4639 26984 27525 47244 47244 -0.053699133909731245 MPEDVKNFYL 10 Oxidation (M) _M(Oxidation (M))PEDVKNFYL_ M(1)PEDVKNFYL M(72)PEDVKNFYL 0 0 1 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2;ENST00000587511.1_1_18:34387792-34408730:-|nuORF nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.3029174804688 2 636.302464 1270.59037 0.72946 0.00046416 0.29898 0.00019024 1.0284 0.0006544 636.3023306152184 54.376 0.30819 54.376 54.197 54.505 0 31 13 3 0 0 0 0.024351 1 30138 30138 71.708 53.562 1 6036900 40324 4639 26985 27526 47245 47245 840 -0.0340968615669226 MPEDVKNFYL 10 Oxidation (M) _M(Oxidation (M))PEDVKNFYL_ M(1)PEDVKNFYL M(44)PEDVKNFYL 0 0 1 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2;ENST00000587511.1_1_18:34387792-34408730:-|nuORF nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3025512695312 2 636.302464 1270.59037 -0.14717 -9.3643E-05 0.058925 3.7494E-05 -0.088243 -5.6149E-05 636.3025285052106 54.877 0.29767 54.41 54.281 54.579 -0.46664 33 14 3 0 0 0 0.11824 1 29741 29741 43.772 28.934 1 5083300 40325 4639 26985 27526 47246 47246 840 -0.0340968615669226 MPEDVKNFYL 10 Oxidation (M) _M(Oxidation (M))PEDVKNFYL_ 0 0 1 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2;ENST00000587511.1_1_18:34387792-34408730:-|nuORF nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 636.302464 1270.59037 0.80376 0.00051143 -0.15481 -9.8504E-05 0.64895 0.00041293 636.8039087801196 60.304 0.31571 54.19 54.064 54.379 -6.1147 -0.13552 -0.00033885 NaN 71.708 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 11863000 40326 4639 26985 27526 840 -0.0340968615669226 MPEEESAKVCL 11 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PEEESAKVC(Carbamidomethyl (C))L_ MPEEESAKVC(1)L M(1)PEEESAKVCL MPEEESAKVC(120)L M(120)PEEESAKVCL 0 1 1 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.2944946289062 2 654.794146 1307.57374 0.49006 0.00032089 -0.38279 -0.00025065 0.10727 7.024E-05 654.7942722914545 38.876 0.24913 34.425 34.316 34.565 -4.4509 22 15 2 0 0 0 6.1613E-11 1 23001 23001 121.5 77.731 1 13030000 40327 2972 26986 27527 47247 47247 306 515 -0.06774555104925639 MPEEESAKVCL 11 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PEEESAKVC(Carbamidomethyl (C))L_ MPEEESAKVC(1)L M(1)PEEESAKVCL MPEEESAKVC(130)L M(130)PEEESAKVCL 0 1 1 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.29541015625 2 654.794146 1307.57374 0.751 0.00049175 -1.2803 -0.00083832 -0.52928 -0.00034657 654.7942148224029 39.13 0.27549 34.679 34.565 34.84 -4.4509 44 17 5 0 0 0 7.5833E-15 1 23160 23160 132.13 88.362 1 9639500 40328 2972 26986 27527 47248 47248 306 515 -0.06774555104925639 MPEEESAKVCL 11 Carbamidomethyl (C) _MPEEESAKVC(Carbamidomethyl (C))L_ MPEEESAKVC(1)L MPEEESAKVC(130)L 0 1 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.7963256835938 2 646.796688 1291.57882 0.37386 0.00024181 -1.3898 -0.0008989 -1.0159 -0.00065709 646.7964083268872 46.42 0.32957 41.34 41.1 41.43 -5.0805 54 24 3 0 0 0 7.5833E-15 2 28678 28537;28678 132.13 112.77 1 42715000 40329 2972 26986 27528 47249;47250 47250 306 -0.05530251242316808 MPEEIARYY 9 Oxidation (M) _M(Oxidation (M))PEEIARYY_ M(1)PEEIARYY M(82)PEEIARYY 0 0 1 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2723999023438 2 594.273706 1186.53286 0.43474 0.00025835 -2.3563 -0.0014003 -1.9215 -0.0011419 594.2719881268588 38.826 0.20371 38.826 38.725 38.929 0 20 8 3 0 0 0 0.009483 1 20746 20746 81.89 47.788 1 4409600 40330 7249 26987 27529 47251 47251 1254 -0.052945283622648276 MPEEKLVEAL 10 Oxidation (M) _M(Oxidation (M))PEEKLVEAL_ M(1)PEEKLVEAL M(73)PEEKLVEAL 0 0 1 ENSG00000168101|ENST00000304301|NUDT16L1;ENST00000405142.1_1_16:4744898-4745177:+|nuORF ENSG00000168101|ENST00000304301|NUDT16L1 ENSG00000168101|ENST00000304301|NUDT16L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.8056640625 2 587.804839 1173.59513 0.35116 0.00020641 0.36127 0.00021236 0.71243 0.00041877 587.8048606926569 49.974 0.26374 49.974 49.812 50.075 0 20 11 2 0 0 0 0.022716 1 27522 27522 73.196 38.795 1 6283300 40331 7719 26988 27530 47252 47252 1317 0.015271979860699503 MPEGEKLVNY 10 Oxidation (M) _M(Oxidation (M))PEGEKLVNY_ M(1)PEGEKLVNY M(63)PEGEKLVNY 0 0 1 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2860107421875 2 598.286814 1194.55907 -0.68417 -0.00040933 0.048656 2.911E-05 -0.63552 -0.00038022 598.2869445049371 34.469 0.2705 34.469 34.326 34.597 0 31 13 3 0 0 0 0.039874 1 18134 18134 63.227 35.599 1 7351200 40332 9930 26989 27531 47253 47253 1602 -0.03042259190783625 MPEGEKLVNYY 11 Oxidation (M) _M(Oxidation (M))PEGEKLVNYY_ M(1)PEGEKLVNYY M(63)PEGEKLVNYY 0 0 1 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 680.3187255859375 2 679.818478 1357.6224 -0.37648 -0.00025594 0.39758 0.00027028 0.021102 1.4346E-05 679.8188047833343 41.798 0.33152 41.798 41.626 41.957 0 46 16 4 0 0 0 0.014324 1 22540 22540 63.227 47.38 1 12482000 40333 9930 26990 27532 47254 47254 1602 -0.04210318473542429 MPEGEKLVNYY 11 Oxidation (M) _M(Oxidation (M))PEGEKLVNYY_ 0 0 1 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 679.818478 1357.6224 1.2672 0.00086146 -0.010021 -6.8128E-06 1.2572 0.00085465 680.32117661304 47.236 0.22561 42.155 42.112 42.337 -5.0805 0.17859 -0.00051906 NaN 63.227 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 13421000 40334 9930 26990 27532 1602 -0.04210318473542429 MPEGEKLVNYY 11 Unmodified _MPEGEKLVNYY_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.322509765625 2 671.821021 1341.62749 1.0166 0.00068296 -1.2493 -0.00083931 -0.23273 -0.00015635 671.8205621757692 54.144 0.41916 48.279 48.066 48.485 -5.8653 51 23 3 0 0 0 0.00028183 2 34380 34241;34380 91.085 70.67 1 24797000 40335 9930 26990 27533 47255;47256 47256 -0.029660146109335983 MPEGEKLVNYY 11 Unmodified _MPEGEKLVNYY_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 671.821021 1341.62749 0.25464 0.00017107 -0.62274 -0.00041837 -0.3681 -0.0002473 671.82025812914 47.979 0.20422 47.979 47.81 48.014 0 -0.14981 0.00067962 NaN 91.085 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 903020 40336 9930 26990 27533 -0.029660146109335983 MPEHVLTSESM 11 Unmodified _MPEHVLTSESM_ 0 0 0 nc|ENSG00000067646|P08048-3|ZFY;ENSG00000067646|ENST00000155093|ZFY nc|ENSG00000067646|P08048-3|ZFY nc|ENSG00000067646|P08048-3|ZFY MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.7835083007812 2 630.783581 1259.55261 0.59214 0.00037351 0.29764 0.00018775 0.88979 0.00056126 630.7836726079544 45.872 0.27274 40.917 40.745 41.018 -4.9549 26 17 2 0 0 0 0.019459 1 28249 28249 57.722 17.772 1 7404500 40337 962 26991 27534 47257 47257 -0.06678520413834121 MPEKEPPPPY 10 Oxidation (M) _M(Oxidation (M))PEKEPPPPY_ M(1)PEKEPPPPY M(86)PEKEPPPPY 0 0 1 ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7825927734375 2 600.783907 1199.55326 -0.64039 -0.00038474 0.12829 7.7077E-05 -0.51209 -0.00030766 600.7838396772096 26.256 0.85993 26.256 25.986 26.846 0 96 43 3 0 0 0 0.011118 2 13492 13492;13594 85.642 65.188 1 3091400 40338 984 26992 27535 47258;47259 47258 159 -0.03853357702473659 MPEKEPSVL 9 Oxidation (M) _M(Oxidation (M))PEKEPSVL_ M(1)PEKEPSVL M(77)PEKEPSVL 0 0 1 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19;ENST00000495415.5_1_10:99221527-99223714:-|nuORF nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2655029296875 2 523.26535 1044.51615 0.28626 0.00014979 0.1673 8.7544E-05 0.45356 0.00023733 523.2656269206599 31.157 0.6069 31.157 30.791 31.398 0 92 29 4 0 0 0 0.011291 1 16201 16201 76.825 34.985 1 11740000 40339 6374 26993 27536 47260 47260 1119 -0.004330292482109144 MPEKLSHKL 9 Unmodified _MPEKLSHKL_ 0 0 0 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 ENSG00000125445|ENST00000245539|MRPS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5398559570312 3 361.539077 1081.5954 1.3093 0.00047335 -0.25193 -9.1083E-05 1.0573 0.00038227 361.53896596175076 22.369 0.29436 19.62 19.457 19.751 -2.7491 34 15 3 0 0 0 0.18144 1 12006 12006 18.721 4.3158 1 4910900 40340 3850 26994 27537 47261 47261 0.05786662496598183 MPELVDFRQY 10 Unmodified _MPELVDFRQY_ 0 0 0 nc|ENSG00000151726|P33121-2|ACSL1;nc|ENSG00000151726|P33121-3|ACSL1;ENSG00000151726|ENST00000281455|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 nc|ENSG00000151726|P33121-2|ACSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.315673828125 2 649.315906 1296.61726 0.42039 0.00027297 -1.7887 -0.0011614 -1.3683 -0.00088843 649.3161426597301 67.526 0.23016 67.044 66.889 67.119 -0.48218 20 9 3 0 0 0 0.41822 1 36912 36912 20.581 10.43 1 960520 40341 6143 26995 27538 47262 47262 -0.019185775455071052 MPELVQHKL 9 Unmodified _MPELVQHKL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5399780273438 3 365.539077 1093.5954 1.676 0.00061263 -0.87382 -0.00031942 0.80214 0.00029321 365.53876014919257 42.544 0.33278 37.859 37.693 38.026 -4.6846 41 22 2 0 0 0 0.036857 2 25778 25647;25778 40.725 29.925 1 26015000 40342 8497 26996 27539 47263;47264 47264 0.05234662496582132 MPEMFEMGLIR 11 Unmodified _MPEMFEMGLIR_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2183227539062 3 451.883638 1352.62909 0.72246 0.00032647 0.31246 0.0001412 1.0349 0.00046766 452.2179353860001 81.035 0.11723 80.542 80.465 80.582 -0.49247 6 4 2 0 0 0 0.71618 1 44396 44396 1.1098 0.48293 1 1273200 + 40343 21967 26997 27540 47265 47265 -0.033124201181635726 MPEMFEMGLIR 11 Unmodified _MPEMFEMGLIR_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.8849792480469 3 451.883638 1352.62909 4.4013 0.0019889 1.2036 0.00054389 5.6049 0.0025328 451.8840116932882 98.693 0.24087 98.665 98.506 98.746 -0.028282 16 8 2 0 0 0 0.56638 1 54829 54829 7.0371 0.80273 1 6836400 + 40344 21967 26997 27540 47266 47266 -0.033124201181635726 MPEMFEMGLIR 11 Unmodified _MPEMFEMGLIR_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 451.883638 1352.62909 0.25784 0.00011651 4.2259 0.0019096 4.4838 0.0020261 451.8854950342911 98.9 0.14966 98.706 98.572 98.721 -0.19321 0.020672 0.0027887 NaN 7.0371 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 490130 + 40345 21967 26997 27540 -0.033124201181635726 MPEMFEMGLIR 11 Unmodified _MPEMFEMGLIR_ 0 0 0 REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF REV__ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 451.883638 1352.62909 4.4013 0.0019889 1.2036 0.00054389 5.6049 0.0025328 451.8840116932882 98.693 0.24087 98.665 98.506 98.746 -0.028282 -0.020672 -0.0013086 NaN 7.0371 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6836400 + 40346 21967 26997 27540 -0.033124201181635726 MPENKVAVKDY 11 Unmodified _MPENKVAVKDY_ 0 0 0 L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|44|2|sense L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|44|2|sense L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|44|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3292846679688 2 647.329013 1292.64347 0.87906 0.00056904 -0.21812 -0.0001412 0.66094 0.00042784 647.3289873855755 55.646 0.53449 49.725 49.49 50.024 -5.9211 97 31 4 0 0 0 0.5229 1 35309 35309 15.248 3.0078 1 136850000 40347 15950 26998 27541 47267 47267 0.008856916259901482 MPEPASRCL 9 Carbamidomethyl (C) _MPEPASRC(Carbamidomethyl (C))L_ MPEPASRC(1)L MPEPASRC(44)L 0 1 0 nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.749755859375 2 530.749344 1059.48414 -0.063362 -3.3629E-05 -1.0914 -0.00057924 -1.1547 -0.00061287 530.7501755603932 31.768 0.2612 31.768 31.619 31.88 0 25 12 3 0 0 0 0.05483 1 16568 16568 43.772 16.889 1 1696500 40348 4905 26999 27542 47268 47268 508 -0.043227202030038825 MPEPASRCL 9 Carbamidomethyl (C) _MPEPASRC(Carbamidomethyl (C))L_ MPEPASRC(1)L MPEPASRC(66)L 0 1 0 nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7498168945312 2 530.749344 1059.48414 0.86961 0.00046154 -0.92835 -0.00049272 -0.058746 -3.1179E-05 530.7493766321928 36.215 0.33412 32.022 31.802 32.137 -4.1928 42 19 3 0 0 0 0.017075 2 21118 20981;21118 66.457 32.354 1 39851000 40349 4905 26999 27542 47269;47270 47270 508 -0.043227202030038825 MPEPASRCL 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PEPASRC(Carbamidomethyl (C))L_ MPEPASRC(1)L M(1)PEPASRCL MPEPASRC(69)L M(69)PEPASRCL 0 1 1 nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7473754882812 2 538.746802 1075.47905 0.29801 0.00016055 -0.070506 -3.7985E-05 0.2275 0.00012257 538.746893418497 26.484 0.29736 23.533 23.358 23.656 -2.9511 32 15 3 0 0 0 0.014417 1 14565 14565 69.105 23.084 1 10797000 40350 4905 26999 27543 47271 47271 508 891 -0.055670240656127135 MPEPASRCL 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PEPASRC(Carbamidomethyl (C))L_ MPEPASRC(1)L M(1)PEPASRCL MPEPASRC(60)L M(60)PEPASRCL 0 1 1 nc|ENSG00000137161|Q9BT09-2|CNPY3;ENSG00000137161|ENST00000372836|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 nc|ENSG00000137161|Q9BT09-2|CNPY3 MSMS AL20221201_MKP_PDAC_01 4 538.7468872070312 2 538.746802 1075.47905 NaN NaN NaN NaN NaN NaN NaN 25.779 1 22.828 22.328 23.328 -2.9511 0 0 0 0.044471 1 14137 14137 60.074 17.979 1 40351 4905 26999 27543 47272 47272 508 891 -0.055670240656127135 MPEPDAQRF 9 Oxidation (M) _M(Oxidation (M))PEPDAQRF_ M(1)PEPDAQRF M(79)PEPDAQRF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7509155273438 2 553.750398 1105.48624 -0.23582 -0.00013058 -0.68015 -0.00037663 -0.91597 -0.00050722 553.7499045939652 27.17 0.28517 27.17 27.012 27.297 0 34 13 3 0 0 0 0.010611 1 13949 13949 78.728 55.58 1 7846600 40352 6019 27000 27544 47273 47273 1074 -0.06227968193547895 MPEPDAQRF 9 Oxidation (M) _M(Oxidation (M))PEPDAQRF_ M(1)PEPDAQRF M(69)PEPDAQRF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7506713867188 2 553.750398 1105.48624 -0.31768 -0.00017592 0.50001 0.00027688 0.18232 0.00010096 553.7507562837876 27.767 0.2857 27.767 27.638 27.924 0 34 13 4 0 0 0 0.014417 1 14289 14289 69.105 55.597 1 10622000 40353 6019 27000 27544 47274 47274 1074 -0.06227968193547895 MPEPDAQRF 9 Oxidation (M) _M(Oxidation (M))PEPDAQRF_ M(1)PEPDAQRF M(60)PEPDAQRF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2509155273438 2 553.750398 1105.48624 1.0364 0.00057392 -1.4541 -0.00080524 -0.41773 -0.00023132 553.7493912260338 30.443 0.31365 26.946 26.757 27.07 -3.497 21 15 2 0 0 0 0.023481 1 17155 17155 60.074 43.132 1 10898000 40354 6019 27000 27544 47275 47275 1074 -0.06227968193547895 MPEPDAQRF 9 Unmodified _MPEPDAQRF_ 0 0 0 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7518310546875 2 545.752941 1089.49133 0.25155 0.00013729 0.43552 0.00023769 0.68707 0.00037497 545.7533028022139 35.904 0.21588 35.904 35.816 36.032 0 18 10 2 0 0 0 0.014417 1 19009 19009 69.105 23.405 1 4710700 40355 6019 27000 27545 47276 47276 -0.04983664330939064 MPEPDAQRF 9 Unmodified _MPEPDAQRF_ 0 0 0 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7520751953125 2 545.752941 1089.49133 1.1176 0.00060992 -1.8983 -0.001036 -0.78078 -0.00042611 545.7515496062279 41.042 0.37186 36.434 36.211 36.583 -4.6079 34 22 2 0 0 0 0.014417 1 24566 24566 69.105 45.956 1 35873000 40356 6019 27000 27545 47277 47277 -0.04983664330939064 MPEPDAQRFF 10 Oxidation (M) _M(Oxidation (M))PEPDAQRFF_ M(1)PEPDAQRFF M(83)PEPDAQRFF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2847900390625 2 627.284605 1252.55466 0.55008 0.00034505 -0.57544 -0.00036097 -0.025368 -1.5913E-05 627.2842807480558 49.361 0.27472 49.361 49.236 49.51 0 33 12 3 0 0 0 0.012821 1 27150 27150 82.529 60.992 1 5937300 40357 6019 27001 27546 47278 47278 1074 -0.061517236137206055 MPEPDAQRFF 10 Oxidation (M) _M(Oxidation (M))PEPDAQRFF_ M(1)PEPDAQRFF M(93)PEPDAQRFF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7858276367188 2 627.284605 1252.55466 0.62888 0.00039449 -0.019819 -1.2432E-05 0.60906 0.00038205 627.2846504718044 49.708 0.34908 49.708 49.51 49.859 0 36 15 3 0 0 0 0.0072789 1 27341 27341 92.653 71.116 1 6999000 40358 6019 27001 27546 47279 47279 1074 -0.061517236137206055 MPEPDAQRFF 10 Oxidation (M) _M(Oxidation (M))PEPDAQRFF_ M(1)PEPDAQRFF M(73)PEPDAQRFF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.28564453125 2 627.284605 1252.55466 0.63361 0.00039745 -0.089766 -5.6309E-05 0.54384 0.00034114 627.2846157643294 49.784 0.35217 49.392 49.198 49.55 -0.3923 35 17 3 0 0 0 0.022967 1 26772 26772 72.968 45.339 1 3736200 40359 6019 27001 27546 47280 47280 1074 -0.061517236137206055 MPEPDAQRFF 10 Oxidation (M) _M(Oxidation (M))PEPDAQRFF_ M(1)PEPDAQRFF M(50)PEPDAQRFF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.285400390625 2 627.284605 1252.55466 0.67041 0.00042054 0.14136 8.8673E-05 0.81177 0.00050921 627.2849638944407 50.174 0.32426 49.782 49.607 49.931 -0.3923 39 15 3 0 0 0 0.087043 1 26982 26982 49.554 28.017 1 4640700 40360 6019 27001 27546 47281 47281 1074 -0.061517236137206055 MPEPDAQRFF 10 Oxidation (M) _M(Oxidation (M))PEPDAQRFF_ M(1)PEPDAQRFF M(110)PEPDAQRFF 0 0 1 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.284912109375 2 627.284605 1252.55466 0.95564 0.00059946 0.12761 8.0045E-05 1.0832 0.0006795 627.2844874555481 55.431 0.35608 49.509 49.35 49.706 -5.9211 35 21 2 0 0 0 0.0023019 1 35271 35271 106.94 85.403 1 16534000 40361 6019 27001 27546 47282 47282 1074 -0.061517236137206055 MPEPDAQRFF 10 Unmodified _MPEPDAQRFF_ 0 0 0 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2869873046875 2 619.287148 1236.55974 0.40926 0.00025345 -1.8587 -0.001151 -1.4494 -0.0008976 619.2862888027893 57.896 0.12298 57.406 57.369 57.492 -0.48974 8 5 2 0 0 0 0.060508 1 31491 31491 55.503 40.254 1 4935600 40362 6019 27001 27547 47283 47283 -0.04907419751089037 MPEPDAQRFF 10 Unmodified _MPEPDAQRFF_ 0 0 0 nc|ENSG00000149554|O14757-2|CHEK1;nc|ENSG00000149554|O14757-3|CHEK1;ENSG00000149554|ENST00000438015|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 nc|ENSG00000149554|O14757-2|CHEK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.287841796875 2 619.287148 1236.55974 1.0106 0.00062585 -0.70555 -0.00043694 0.30505 0.00018891 619.2865645789757 63.761 0.54449 57.585 57.355 57.899 -6.1757 55 29 2 0 0 0 1.8216E-05 2 41205 41205;41337 126.57 98.937 1 44913000 40363 6019 27001 27547 47284;47285 47284 -0.04907419751089037 MPEPTVLSL 9 Oxidation (M) _M(Oxidation (M))PEPTVLSL_ M(1)PEPTVLSL M(42)PEPTVLSL 0 0 1 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7596740722656 2 501.762443 1001.51033 0.5791 0.00029057 -0.87843 -0.00044076 -0.29933 -0.00015019 501.7618814765543 67.664 0.45169 67.664 67.483 67.934 0 39 21 2 0 0 0 0.06187 1 37687 37687 42.095 13.608 1 6860600 40364 9860 27002 27548 47286 47286 1583 0.009638722401291488 MPEPTVLSL 9 Oxidation (M) _M(Oxidation (M))PEPTVLSL_ M(1)PEPTVLSL M(60)PEPTVLSL 0 0 1 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7630004882812 2 501.762443 1001.51033 0.56717 0.00028458 0.21557 0.00010816 0.78274 0.00039275 501.7627134252792 68.066 0.37484 68.066 67.914 68.289 0 56 18 4 0 0 0 0.023164 1 37991 37991 60.39 24.345 1 5684000 40365 9860 27002 27548 47287 47287 1583 0.009638722401291488 MPEPTVLSL 9 Unmodified _MPEPTVLSL_ 0 0 0 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 MSMS AL20221201_MKP_PDAC_01 4 493.7661743164062 2 493.764986 985.515419 NaN NaN NaN NaN NaN NaN NaN 85.151 1 78.975 78.475 79.475 -6.1757 0 0 0 0.050352 1 56064 56064 57.471 13.064 1 40366 9860 27002 27549 47288 47288 0.022081761027379798 MPEPTVLSL 9 Unmodified _MPEPTVLSL_ 0 0 0 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 ENSG00000196683|ENST00000358435|TOMM7 MSMS AL20221201_MKP_PDAC_01 4 493.7655334472656 2 493.764986 985.515419 NaN NaN NaN NaN NaN NaN NaN 85.345 1 79.17 78.67 79.67 -6.1757 0 0 0 0.17247 1 56203 56203 34.102 0 1 40367 9860 27002 27549 47289 47289 0.022081761027379798 MPEQERQI 8 Unmodified _MPEQERQI_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B;nc|ENSG00000123191|P35670-5|ATP7B nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.2684936523438 2 515.752941 1029.49133 0.96536 0.00049789 1.0705 0.00055209 2.0358 0.00105 515.753164999268 41.573 0.45163 36.965 36.722 37.173 -4.6079 71 29 3 0 0 0 8.7369 1 25129 25129 10.183 0.83596 1 64263000 40368 3689 27003 27550 47290 47290 -0.02223664330927022 MPEQIVIHAL 10 Oxidation (M) _M(Oxidation (M))PEQIVIHAL_ M(1)PEQIVIHAL M(130)PEQIVIHAL 0 0 1 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8170166015625 2 583.815541 1165.61653 0.015936 9.3035E-06 0.8817 0.00051475 0.89764 0.00052406 583.8161787089966 56.57 0.3034 56.57 56.424 56.728 0 39 12 4 0 0 0 6.7445E-07 2 31434 31434;31536 133.05 95.078 1 15604000 40369 2002 27004 27551 47291;47292 47291 342 0.040346278054357754 MPEQIVIHAL 10 Oxidation (M) _M(Oxidation (M))PEQIVIHAL_ M(1)PEQIVIHAL M(110)PEQIVIHAL 0 0 1 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8157958984375 2 583.815541 1165.61653 0.085697 5.0031E-05 1.6727 0.00097655 1.7584 0.0010266 583.8166720105324 57.025 0.54464 56.539 56.17 56.714 -0.48554 38 25 2 0 0 0 0.0015998 1 30984 30984 110.55 85.153 1 17875000 40370 2002 27004 27551 47293 47293 342 0.040346278054357754 MPEQIVIHAL 10 Unmodified _MPEQIVIHAL_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.817626953125 2 575.818084 1149.62162 0.50966 0.00029347 0.64089 0.00036904 1.1505 0.00066251 575.8185195725997 64.975 0.29901 64.491 64.317 64.616 -0.48428 32 13 3 0 0 0 0.061642 1 35432 35432 63.961 49.555 1 2897800 40371 2002 27004 27552 47294 47294 0.05278931668067344 MPEQKTTRG 9 Unmodified _MPEQKTTRG_ 0 0 0 REV__nc|ENSG00000116747|P10155-2|RO60 REV__nc|ENSG00000116747|P10155-2|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2666625976562 2 524.266216 1046.51788 -0.074499 -3.9058E-05 -1.5215 -0.00079769 -1.596 -0.00083675 524.2657748519018 38.122 0.29933 37.85 37.719 38.018 -0.27133 39 13 4 0 0 0 0.16226 1 20052 20052 26.884 7.6267 1 13437000 + 40372 19065 27005 27553 47295 47295 -0.0035197543959384348 MPEQWARLL 9 Unmodified _MPEQWARLL_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2;ENST00000533568.5_1_11:77069900-77103583:-|nuORF;ENSG00000149269|ENST00000356341|PAK1;nc|ENSG00000149269|Q13153-2|PAK1 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MSMS AL20221201_MKP_PDAC_01 4 572.30322265625 2 572.302601 1142.59065 NaN NaN NaN NaN NaN NaN NaN 89.845 1 83.669 83.169 84.169 -6.1757 0 0 0 0.025332 1 59317 59317 71.922 17.149 1 40373 8896 27006 27554 47296 47296 0.02505778353815913 MPESGPSYEF 10 Oxidation (M) _M(Oxidation (M))PESGPSYEF_ M(1)PESGPSYEF M(78)PESGPSYEF 0 0 1 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000553714.1_1_14:53110290-53113110:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2346801757812 2 580.234247 1158.45394 0.87279 0.00050642 -1.1412 -0.00066214 -0.26837 -0.00015572 580.2336589003693 46.237 0.48696 46.237 45.994 46.481 0 60 22 3 0 0 0 0.017277 2 25293 25180;25293 78.149 54.129 1 6493700 40374 10024 27007 27555 47297;47298 47298 1629 -0.11894800387221949 MPETTETVL 9 Oxidation (M) _M(Oxidation (M))PETTETVL_ M(1)PETTETVL M(71)PETTETVL 0 0 1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7467041015625 2 518.74699 1035.47943 0.18006 9.3405E-05 -0.1758 -9.1194E-05 0.0042618 2.2108E-06 518.7469729855702 40.227 0.32112 40.227 40.049 40.37 0 51 15 4 0 0 0 0.013472 1 21563 21563 70.716 34.671 1 22297000 40375 10618 27008 27556 47299 47299 1705 -0.03689325864775128 MPETTETVL 9 Oxidation (M) _M(Oxidation (M))PETTETVL_ M(1)PETTETVL M(71)PETTETVL 0 0 1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7469482421875 2 518.74699 1035.47943 0.024951 1.2943E-05 -0.3856 -0.00020003 -0.36065 -0.00018709 518.7467816255964 40.529 0.36924 40.529 40.37 40.739 0 58 19 4 0 0 0 0.013472 2 21747 21747;21865 70.716 40.491 1 31357000 40376 10618 27008 27556 47300;47301 47300 1705 -0.03689325864775128 MPETTETVL 9 Unmodified _MPETTETVL_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7498779296875 2 510.749533 1019.48451 0.70131 0.0003582 -0.61471 -0.00031396 0.086606 4.4234E-05 510.74931405671583 57.17 0.58619 51.142 50.857 51.443 -6.0275 56 33 2 0 0 0 0.013472 3 36566 36427;36566;36696 70.716 40.491 1 66970000 40377 10618 27008 27557 47302;47303;47304 47303 -0.02445022002166297 MPEVKVETI 9 Oxidation (M) _M(Oxidation (M))PEVKVETI_ M(1)PEVKVETI M(52)PEVKVETI 0 0 1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2807006835938 2 531.281 1060.54745 0.19694 0.00010463 0.1493 7.9319E-05 0.34624 0.00018395 531.2807426633934 40.282 0.69252 40.282 39.853 40.545 0 143 34 7 0 0 0 0.036857 1 21690 21690 51.63 13.656 1 245490000 + 40378 29699 27009 27558 47305 47305 1868 0.019595437858924925 MPEVKVETI 9 Oxidation (M) _M(Oxidation (M))PEVKVETI_ M(1)PEVKVETI M(48)PEVKVETI 0 0 1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2813720703125 2 531.281 1060.54745 0.44768 0.00023784 -0.13792 -7.3276E-05 0.30976 0.00016457 531.2809927309448 45.41 0.928 40.456 39.98 40.908 -4.9549 165 62 3 0 0 0 0.044296 1 27696 27696 47.594 13.193 1 163250000 + 40379 29699 27009 27558 47306 47306 1868 0.019595437858924925 MPEVKVETI 9 Oxidation (M) _M(Oxidation (M))PEVKVETI_ 0 0 1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.281 1060.54745 0.55143 0.00029297 -0.26309 -0.00013978 0.28834 0.00015319 531.2809249790341 40.615 0.43925 40.312 39.936 40.376 -0.30304 -0.015193 -0.00023645 NaN 51.63 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1931800 + 40380 29699 27009 27558 1868 0.019595437858924925 MPEVKVETI 9 Oxidation (M) _M(Oxidation (M))PEVKVETI_ 0 0 1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.281 1060.54745 0.41472 0.00022033 0.55558 0.00029517 0.97029 0.0005155 531.2814684705837 40.254 0.27184 40.259 40.088 40.36 0.0050583 -0.067813 0.00063343 NaN 51.63 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1322300 + 40381 29699 27009 27558 1868 0.019595437858924925 MPEVKVETI 9 Oxidation (M) _M(Oxidation (M))PEVKVETI_ 0 0 1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 531.281 1060.54745 0.44768 0.00023784 -0.13792 -7.3276E-05 0.30976 0.00016457 531.2809927309448 45.41 0.928 40.456 39.98 40.908 -4.9549 0.12822 -0.00010345 NaN 51.63 165 62 3 NaN NaN NaN NaN 0 NaN NaN 0 163250000 + 40382 29699 27009 27558 1868 0.019595437858924925 MPEVKVETI 9 Unmodified _MPEVKVETI_ 0 0 0 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7857055664062 2 523.283543 1044.55253 0.4306 0.00022533 -0.40887 -0.00021395 0.021736 1.1374E-05 523.2834128001826 49.073 0.36613 49.073 48.89 49.256 0 60 17 5 0 0 0 0.07087 2 26920 26920;27034 39.95 15.929 1 69133000 + 40383 29699 27009 27559 47307;47308 47307 0.032038476485013234 MPEVKVETI 9 Unmodified _MPEVKVETI_ 0 0 0 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7857055664062 2 523.283543 1044.55253 0.4306 0.00022533 -0.40887 -0.00021395 0.021736 1.1374E-05 523.2834128001826 49.073 0.36613 49.073 48.89 49.256 0 60 17 5 0 0 0 0.10271 1 26920 26920 39.95 15.929 1 69133000 + 40384 29699 27009 27559 47309 47309 0.032038476485013234 MPEVKVETI 9 Unmodified _MPEVKVETI_ 0 0 0 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2847900390625 2 523.283543 1044.55253 1.2166 0.00063663 -0.59761 -0.00031272 0.61899 0.00032391 523.2833336657766 55.213 0.73116 49.292 48.956 49.688 -5.9211 145 45 4 0 0 0 0.044011 3 34955 34955;35090;35233 47.749 17.112 1 827880000 + 40385 29699 27009 27559 47310;47311;47312 47310 0.032038476485013234 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ M(1)PEVRGALF M(63)PEVRGALF 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2685546875 2 518.268227 1034.5219 0.35869 0.0001859 -0.27748 -0.00014381 0.08121 4.2088E-05 518.268348059924 48.38 0.56765 48.009 47.671 48.238 -0.37172 87 28 4 0 0 0 0.020973 2 25979 25876;25979 62.573 14.227 1 53023000 40386 4300 27010 27560 47313;47314 47314 770 0.006021140541179193 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ M(1)PEVRGALF M(46)PEVRGALF 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2699584960938 2 518.268227 1034.5219 0.22622 0.00011724 0.12027 6.2333E-05 0.34649 0.00017957 518.2683180729884 48.882 0.62878 48.511 48.335 48.963 -0.37172 99 31 5 0 0 0 0.047788 2 26208 26208;26324 45.7 13.394 1 65740000 40387 4300 27010 27560 47315;47316 47315 770 0.006021140541179193 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ M(1)PEVRGALF M(54)PEVRGALF 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.268798828125 2 518.268227 1034.5219 0.47795 0.00024771 -0.56227 -0.0002914 -0.084315 -4.3698E-05 518.2682738121115 48.025 0.4396 47.986 47.764 48.203 -0.038643 42 21 3 0 0 0 0.032796 1 25893 25893 53.833 13.875 1 5016700 40388 4300 27010 27560 47317 47317 770 0.006021140541179193 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ M(1)PEVRGALF M(54)PEVRGALF 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2680053710938 2 518.268227 1034.5219 1.2768 0.00066171 -0.13389 -6.9389E-05 1.1429 0.00059232 518.2677065450653 53.943 0.77475 48.078 47.725 48.5 -5.8653 108 46 3 0 0 0 0.032796 2 34085 34085;34236 53.833 13.875 1 125780000 40389 4300 27010 27560 47318;47319 47318 770 0.006021140541179193 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ M(1)PEVRGALF M(48)PEVRGALF 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MSMS AL20221201_MKP_PDAC_01 4 518.2691040039062 2 518.268227 1034.5219 NaN NaN NaN NaN NaN NaN NaN 53.461 1 47.657 47.157 48.157 -5.8042 0 0 0 0.083082 1 33798 33798 47.749 7.7914 1 40390 4300 27010 27560 47320 47320 770 0.006021140541179193 MPEVRGALF 9 Oxidation (M) _M(Oxidation (M))PEVRGALF_ 0 0 1 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.268227 1034.5219 -0.40574 -0.00021028 0.61402 0.00031823 0.20828 0.00010795 518.2685635335763 48.651 0.33718 48.651 48.47 48.808 0 0.070419 0.00030417 NaN 45.7 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 12796000 40391 4300 27010 27560 770 0.006021140541179193 MPEVRGALF 9 Unmodified _MPEVRGALF_ 0 0 0 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.271240234375 2 510.27077 1018.52699 0.069315 3.537E-05 0.2706 0.00013808 0.33991 0.00017345 510.2709855784127 58.851 0.45066 58.361 58.153 58.604 -0.49079 59 21 4 0 0 0 0.062454 2 32070 31967;32070 41.956 16.556 1 21540000 40392 4300 27010 27561 47321;47322 47322 0.018464179167267503 MPEVRGALF 9 Unmodified _MPEVRGALF_ 0 0 0 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2700805664062 2 510.27077 1018.52699 0.88504 0.00045161 -0.73154 -0.00037328 0.1535 7.8328E-05 510.2704049229663 58.503 0.2523 58.442 58.294 58.546 -0.060719 29 12 3 0 0 0 0.039985 1 31823 31823 49.933 13.889 1 12136000 40393 4300 27010 27561 47323 47323 0.018464179167267503 MPEVRGALF 9 Unmodified _MPEVRGALF_ 0 0 0 nc|ENSG00000131100|P36543-3|ATP6V1E1;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 nc|ENSG00000131100|P36543-3|ATP6V1E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2711791992188 2 510.27077 1018.52699 1.2097 0.00061726 -0.36673 -0.00018713 0.84293 0.00043012 510.27055962560416 64.39 0.99992 58.214 57.918 58.917 -6.1757 150 54 4 0 0 0 0.039985 4 41578 41578;41712;41842;41975 49.933 13.889 1 312170000 40394 4300 27010 27561 47324;47325;47326;47327 47324 0.018464179167267503 MPFAPAIQTF 10 Oxidation (M) _M(Oxidation (M))PFAPAIQTF_ M(1)PFAPAIQTF M(44)PFAPAIQTF 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7835083007812 2 569.78371 1137.55287 0.86255 0.00049147 -0.76209 -0.00043423 0.10046 5.7242E-05 569.7831548274542 73.894 0.34106 73.418 73.229 73.57 -0.47588 37 16 3 0 0 0 0.1131 1 40402 40402 44.407 30.899 1 3828100 40395 9027 27011 27562 47328 47328 1515 -0.010407326316908438 MPFAPAIQTF 10 Oxidation (M) _M(Oxidation (M))PFAPAIQTF_ M(1)PFAPAIQTF M(44)PFAPAIQTF 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.783447265625 2 569.78371 1137.55287 0.28557 0.00016272 0.62803 0.00035784 0.9136 0.00052056 569.7842448674334 73.35 0.40155 73.394 73.252 73.654 0.043983 30 17 2 0 0 0 0.1131 1 40412 40412 44.407 19.008 1 8299000 40396 9027 27011 27562 47329 47329 1515 -0.010407326316908438 MPFDANKLY 9 Unmodified _MPFDANKLY_ 0 0 0 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1;nc|ENSG00000132792|Q8WYA6-3|CTNNBL1;nc|ENSG00000132792|Q8WYA6-2|CTNNBL1;ENST00000473857.5_1_20:36384780-36460672:+|nuORF nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7686767578125 2 549.76806 1097.52157 0.37766 0.00020763 3.3641 0.0018495 3.7418 0.0020571 550.2720782619357 62.134 0.43041 55.958 55.76 56.191 -6.1757 46 24 3 0 0 0 0.0090524 1 40034 40034 85.642 37.296 1 61591000 40397 4450 27012 27563 47330 47330 -0.023293056657394118 MPFDPSKV 8 Oxidation (M) _M(Oxidation (M))PFDPSKV_ M(1)PFDPSKV M(42)PFDPSKV 0 0 1 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.72900390625 2 468.728403 935.442254 0.80937 0.00037937 -0.2398 -0.0001124 0.56958 0.00026698 468.72820382710836 36.799 0.24906 36.799 36.648 36.897 0 17 11 2 0 0 0 0.42686 1 19554 19554 41.84 25.992 1 1107800 40398 16209;15895 27013 27564 47331 47331 1782 -0.02804952619874257 MPFDPSKV 8 Unmodified _MPFDPSKV_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20221201_MKP_PDAC_01 4 460.7308959960938 2 460.730946 919.447339 NaN NaN NaN NaN NaN NaN NaN 54.356 1 48.491 47.991 48.991 -5.8653 0 0 0 0.45566 1 34464 34464 45.7 5.7423 1 40399 16209;15895 27013 27565 47332 47332 -0.01560648757265426 MPFDQAHKQY 10 Unmodified _MPFDQAHKQY_ 0 0 0 ENST00000488052.1_1_22:29927628-29932726:-|nuORF;ENST00000358079.8_1_22:29924947-29938918:-|nuORF;ENSG00000100296|ENST00000490103|THOC5 ENST00000488052.1_1_22:29927628-29932726:-|nuORF ENST00000488052.1_1_22:29927628-29932726:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.1978454589844 3 422.197491 1263.57064 1.1628 0.00049094 0.18139 7.6583E-05 1.3442 0.00056753 422.1976424536015 32.536 0.33821 28.68 28.516 28.854 -3.8562 40 17 3 0 0 0 0.051223 1 18561 18561 57.108 37.482 1 14056000 40400 1786 27014 27566 47333 47333 -0.050600173767861634 MPFEIRLPEF 10 Oxidation (M) _M(Oxidation (M))PFEIRLPEF_ M(1)PFEIRLPEF M(88)PFEIRLPEF 0 0 1 ENSG00000028839|ENST00000237264|TBPL1;ENST00000481694.1_1_6:134305546-134307074:+|nuORF ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.8286743164062 2 647.828649 1293.64274 0.33072 0.00021425 -0.26458 -0.0001714 0.066145 4.285E-05 647.8285362207914 88.318 0.57437 88.372 88.21 88.784 0.053352 50 23 3 0 0 0 0.0096273 2 49147 49147;49254 88.364 63.373 1 32642000 40401 575 27015 27567 47334;47335 47334 81 0.007668969768928946 MPFEIRLPEF 10 Oxidation (M) _M(Oxidation (M))PFEIRLPEF_ M(1)PFEIRLPEF M(120)PFEIRLPEF 0 0 1 ENSG00000028839|ENST00000237264|TBPL1;ENST00000481694.1_1_6:134305546-134307074:+|nuORF ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.829345703125 2 647.828649 1293.64274 0.37015 0.0002398 -0.37575 -0.00024342 -0.0055966 -3.6256E-06 647.8284019638933 98.702 0.18769 92.526 92.414 92.602 -6.1757 38 13 4 0 0 0 0.00018404 1 65471 65471 117.84 92.847 1 262050000 40402 575 27015 27567 47336 47336 81 0.007668969768928946 MPFEIRLPEF 10 Unmodified _MPFEIRLPEF_ 0 0 0 ENSG00000028839|ENST00000237264|TBPL1;ENST00000481694.1_1_6:134305546-134307074:+|nuORF ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8336791992188 2 639.831191 1277.64783 2.2938 0.0014676 -1.908 -0.0012208 0.38573 0.0002468 639.8303441827202 96.037 0.41267 96.041 95.79 96.203 0.004158 42 14 4 0 0 0 0.018732 2 53298 53298;53398 76.825 53.035 1 11631000 40403 575 27015 27568 47337;47338 47337 0.02011200839524463 MPFEIRLPEF 10 Unmodified _MPFEIRLPEF_ 0 0 0 ENSG00000028839|ENST00000237264|TBPL1;ENST00000481694.1_1_6:134305546-134307074:+|nuORF ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8313598632812 2 639.831191 1277.64783 0.13539 8.6626E-05 0.17375 0.00011117 0.30914 0.0001978 639.831512543521 99.83 0.23959 93.654 93.541 93.78 -6.1757 57 17 4 0 0 0 0.0044938 1 66559 66559 100.09 70.25 1 335700000 40404 575 27015 27568 47339 47339 0.02011200839524463 MPFFQAQKM 9 2 Oxidation (M) _M(Oxidation (M))PFFQAQKM(Oxidation (M))_ M(1)PFFQAQKM(1) M(61)PFFQAQKM(61) 0 0 2 nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2671508789062 2 580.26737 1158.52019 -0.29798 -0.00017291 1.7714 0.0010279 1.4735 0.00085501 580.2680211829908 34.91 0.27768 34.718 34.584 34.861 -0.19131 16 11 2 0 0 0 0.022193 1 18279 18279 61.357 48.826 1 1655900 40405 2516 27016 27569 47340 47340 431;432 -0.05273263026151653 MPFFQAQKM 9 2 Oxidation (M) _M(Oxidation (M))PFFQAQKM(Oxidation (M))_ M(1)PFFQAQKM(1) M(64)PFFQAQKM(64) 0 0 2 nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2679443359375 2 580.26737 1158.52019 -0.37771 -0.00021917 0.088999 5.1643E-05 -0.28871 -0.00016753 580.7685989244645 35.462 0.226 35.24 35.107 35.333 -0.2224 12 9 2 0 0 0 0.019303 1 18553 18553 64.236 53.412 1 3740300 40406 2516 27016 27569 47341 47341 431;432 -0.05273263026151653 MPFFQAQKM 9 2 Oxidation (M) _M(Oxidation (M))PFFQAQKM(Oxidation (M))_ M(1)PFFQAQKM(1) M(57)PFFQAQKM(57) 0 0 2 nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2664184570312 2 580.26737 1158.52019 NaN NaN NaN NaN NaN NaN NaN 35.213 1 35.24 34.74 35.74 0.027401 0 0 0 0.050352 1 18600 18600 57.471 43.565 1 40407 2516 27016 27569 47342 47342 431;432 -0.05273263026151653 MPFGCLLDY 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PFGC(Carbamidomethyl (C))LLDY_ MPFGC(1)LLDY M(1)PFGCLLDY MPFGC(40)LLDY M(40)PFGCLLDY 0 1 1 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2462768554688 2 566.246103 1130.47765 0.62815 0.00035569 -0.41731 -0.0002363 0.21084 0.00011939 566.2456199796991 78.994 0.27014 79.049 78.888 79.158 0.054977 20 10 2 0 0 0 0.068777 1 43629 43629 40.449 26.543 1 2511100 40408 5788 27017 27570 47343 47343 591 1045 -0.082366581543738 MPFGKGRIQRY 11 Unmodified _MPFGKGRIQRY_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.58056640625 3 451.580046 1351.71831 1.21 0.0005464 0.061784 2.79E-05 1.2718 0.0005743 451.5800615760599 30.517 0.2371 27.02 26.833 27.07 -3.497 21 11 2 0 0 0 0.083469 1 17256 17256 44.392 36.915 1 18390000 40409 1489 27018 27571 47344 47344 0.05651918947864942 MPFGNVVSA 9 Oxidation (M) _M(Oxidation (M))PFGNVVSA_ M(1)PFGNVVSA M(44)PFGNVVSA 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2257690429688 2 469.226028 936.437503 0.32889 0.00015432 -0.10666 -5.0047E-05 0.22223 0.00010427 469.2259742653145 47.003 0.30988 47.003 46.839 47.149 0 21 14 2 0 0 0 0.052168 1 25719 25719 44.407 13.77 1 4431100 40410 5989 27019 27572 47345 47345 1071 -0.033258367626331165 MPFGNVVSA 9 Oxidation (M) _M(Oxidation (M))PFGNVVSA_ M(1)PFGNVVSA M(54)PFGNVVSA 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2256164550781 2 469.226028 936.437503 0.97624 0.00045808 -0.60808 -0.00028533 0.36816 0.00017275 469.22549408317155 47.734 0.25133 47.734 47.601 47.852 0 24 11 3 0 0 0 0.03327 1 26143 26143 53.576 22.939 1 5929400 40411 5989 27019 27572 47346 47346 1071 -0.033258367626331165 MPFGNVVSA 9 Oxidation (M) _M(Oxidation (M))PFGNVVSA_ M(1)PFGNVVSA M(64)PFGNVVSA 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 937.4468994140625 1 937.444779 936.437503 0.60438 0.00056657 0.15343 0.00014383 0.75781 0.00071041 937.4444563191356 47.33 0.18507 46.978 46.879 47.064 -0.3526 13 8 2 0 0 0 0.019303 1 25354 25354 64.236 20.378 1 3964900 40412 5989 27019 27572 47347 47347 1071 -0.033258367626331165 MPFGNVVSA 9 Oxidation (M) _M(Oxidation (M))PFGNVVSA_ M(1)PFGNVVSA M(44)PFGNVVSA 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2256469726562 2 469.226028 936.437503 0.54625 0.00025632 -1.0692 -0.00050171 -0.52298 -0.00024539 469.2257298806694 48.052 0.25556 47.699 47.575 47.831 -0.3526 27 12 3 0 0 0 0.052168 1 25757 25757 44.407 13.77 1 6948800 40413 5989 27019 27572 47348 47348 1071 -0.033258367626331165 MPFGNVVSA 9 Oxidation (M) _M(Oxidation (M))PFGNVVSA_ M(1)PFGNVVSA M(48)PFGNVVSA 0 0 1 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 937.4439086914062 1 937.444779 936.437503 0.48288 0.00045268 -0.52266 -0.00048997 -0.039779 -3.7291E-05 937.4441069025729 48.073 0.19547 47.72 47.615 47.81 -0.3526 15 9 2 0 0 0 0.042911 1 25766 25766 48.346 17.709 1 5456600 40414 5989 27019 27572 47349 47349 1071 -0.033258367626331165 MPFGNVVSA 9 Unmodified _MPFGNVVSA_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2279357910156 2 461.228571 920.442588 -0.30319 -0.00013984 -0.42165 -0.00019448 -0.72483 -0.00033431 461.22821968725583 60.756 0.20584 60.267 60.168 60.374 -0.48932 15 9 2 0 0 0 0.078417 1 33102 33102 38.151 27.968 1 2637500 40415 5989 27019 27573 47350 47350 -0.020815329000242855 MPFGNVVSA 9 Unmodified _MPFGNVVSA_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 921.4500122070312 1 921.449865 920.442588 0.51975 0.00047893 -0.51327 -0.00047296 0.0064784 5.9695E-06 921.4494900783383 68.151 0.43839 61.975 61.784 62.223 -6.1757 52 25 3 0 0 0 0.0088174 3 44504 44378;44504;44634 104.8 58.778 1 41523000 40416 5989 27019 27573 47351;47352;47353 47352 -0.020815329000242855 MPFGNVVSA 9 Unmodified _MPFGNVVSA_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2298889160156 2 461.228571 920.442588 0.66331 0.00030594 0.024898 1.1484E-05 0.6882 0.00031742 461.228817882792 68.192 0.4397 62.017 61.799 62.239 -6.1757 54 25 3 0 0 0 0.03327 2 44537 44410;44537 53.576 53.576 1 38254000 40417 5989 27019 27573 47354;47355 47355 -0.020815329000242855 MPFHDLFNF 9 Unmodified _MPFHDLFNF_ 0 0 0 ENST00000555742.5_1_14:65454237-65454264:+|nuORF ENST00000555742.5_1_14:65454237-65454264:+|nuORF ENST00000555742.5_1_14:65454237-65454264:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2688598632812 2 584.268227 1166.5219 0.72315 0.00042251 0.064009 3.7398E-05 0.78716 0.00045991 584.2681335855566 99.543 0.12662 93.367 93.306 93.432 -6.1757 12 7 2 0 0 0 0.03568 1 66337 66337 52.268 26.869 1 20268000 40418 15231 27020 27574 47356 47356 -0.054698859458994775 MPFKKGAAF 9 Oxidation (M) _M(Oxidation (M))PFKKGAAF_ M(1)PFKKGAAF M(42)PFKKGAAF 0 0 1 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7687072753906 2 506.767863 1011.52117 NaN NaN NaN NaN NaN NaN NaN 25.018 1 25.001 24.501 25.501 -0.017006 0 0 0 0.10545 1 12800 12800 42.095 22.656 1 40419 8134 27021 27575 47357 47357 1377 0.015873194050755046 MPFKKGAAF 9 Oxidation (M) _M(Oxidation (M))PFKKGAAF_ M(1)PFKKGAAF M(48)PFKKGAAF 0 0 1 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7681274414062 2 506.767863 1011.52117 0.35381 0.0001793 -0.6075 -0.00030786 -0.25369 -0.00012856 506.7675917663173 24.668 0.26575 24.692 24.559 24.825 0.024429 21 10 3 0 0 0 0.042911 1 12723 12723 48.346 26.599 1 10292000 40420 8134 27021 27575 47358 47358 1377 0.015873194050755046 MPFKKGAAF 9 Oxidation (M) _M(Oxidation (M))PFKKGAAF_ M(1)PFKKGAAF M(52)PFKKGAAF 0 0 1 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2693786621094 2 506.767863 1011.52117 0.38395 0.00019457 0.10829 5.4879E-05 0.49224 0.00024945 506.7681172553161 27.481 0.29774 24.444 24.317 24.615 -3.0365 25 14 2 0 0 0 0.03568 1 15217 15217 52.268 36.421 1 16805000 40421 8134 27021 27575 47359 47359 1377 0.015873194050755046 MPFKKGAAF 9 Oxidation (M) _M(Oxidation (M))PFKKGAAF_ 0 0 1 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.767863 1011.52117 -0.042495 -2.1535E-05 0.21471 0.00010881 0.17222 8.7274E-05 506.76830045806275 24.489 0.18568 24.489 24.386 24.572 0 0.044034 0.00036676 NaN 52.268 13 8 3 NaN NaN NaN NaN 0 NaN NaN 0 702080 40422 8134 27021 27575 1377 0.015873194050755046 MPFKKGAAF 9 Unmodified _MPFKKGAAF_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7721862792969 2 498.770406 995.526258 1.2628 0.00062984 2.0376 0.0010163 3.3004 0.0016461 498.7718734685344 37.045 0.49889 32.761 32.524 33.023 -4.2835 86 30 4 0 0 0 0.023164 2 21698 21698;21840 60.39 23.923 1 40274000 40423 8134 27021 27576 47360;47361 47360 0.028316232676843356 MPFLHLHNM 9 2 Oxidation (M) _M(Oxidation (M))PFLHLHNM(Oxidation (M))_ M(1)PFLHLHNM(1) M(57)PFLHLHNM(57) 0 0 2 ENST00000524507.5_1_11:117100562-117102552:-|nuORF;ENST00000532301.5_1_11:117100562-117101901:-|nuORF;ENST00000320934.7_1_11:117100562-117103224:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2734375 2 586.272986 1170.53142 -0.42421 -0.0002487 0.17168 0.00010065 -0.25253 -0.00014805 586.2735791769126 35.112 0.31036 34.889 34.691 35.001 -0.2224 22 13 3 0 0 0 0.026094 1 18369 18369 57.471 42.89 1 1737200 40424 11768 27022 27577 47362 47362 1747;1748 -0.047024409319874394 MPFLHLHNM 9 Unmodified _MPFLHLHNM_ 0 0 0 ENST00000524507.5_1_11:117100562-117102552:-|nuORF;ENST00000532301.5_1_11:117100562-117101901:-|nuORF;ENST00000320934.7_1_11:117100562-117103224:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5218505859375 3 380.52114 1138.54159 0.76872 0.00029251 0.19657 7.4797E-05 0.96528 0.00036731 380.52120782453784 85.526 0.71643 79.351 78.938 79.655 -6.1757 53 43 2 0 0 0 0.062454 3 56259 56117;56259;56436 41.956 29.715 1 29527000 40425 11768 27022 27578 47363;47364;47365 47364 -0.022138332067697775 MPFLQEDLY 9 Oxidation (M) _M(Oxidation (M))PFLQEDLY_ M(1)PFLQEDLY M(46)PFLQEDLY 0 0 1 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000422642.6_2_10:30987145-31001569:+|nuORF nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2713012695312 2 586.270632 1170.52671 0.28981 0.00016991 1.0299 0.00060378 1.3197 0.00077369 586.271022806327 67.188 0.54993 67.188 66.816 67.366 0 44 24 3 0 0 0 0.047196 1 37489 37489 46.021 23.285 1 4035700 40426 9939 27023 27579 47366 47366 1605 -0.051730465937907866 MPFLQEDLY 9 Unmodified _MPFLQEDLY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000422642.6_2_10:30987145-31001569:+|nuORF nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2748413085938 2 578.273175 1154.5318 0.78168 0.00045203 1.4301 0.000827 2.2118 0.001279 578.2734290148561 81.659 0.34095 81.164 80.972 81.313 -0.4952 43 13 4 0 0 0 0.41742 1 44664 44664 11.64 4.9171 1 2299000 40427 9939 27023 27580 47367 47367 -0.039287427311819556 MPFLQEDLY 9 Unmodified _MPFLQEDLY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000422642.6_2_10:30987145-31001569:+|nuORF nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2736206054688 2 578.273175 1154.5318 0.95572 0.00055266 0.92261 0.00053352 1.8783 0.0010862 578.2731172968022 90.028 0.642 83.852 83.615 84.257 -6.1757 61 36 3 0 0 0 0.038285 2 59517 59383;59517 50.855 13.715 1 12129000 40428 9939 27023 27580 47368;47369 47369 -0.039287427311819556 MPFNGKAYIFL 11 Unmodified _MPFNGKAYIFL_ 0 0 0 REV__ENSG00000103479|ENST00000262133|RBL2 REV__ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2313232421875 3 434.230132 1299.66857 0.87745 0.00038102 2.3269 0.0010104 3.2044 0.0013914 434.23105205491987 33.223 0.14835 29.367 29.295 29.443 -3.8562 14 8 2 0 0 0 0.54321 1 19068 19068 14.218 2.5868 1 10073000 + 40429 18307 27024 27581 47370 47370 0.030717912192130825 MPFNKEPKW 9 Unmodified _MPFNKEPKW_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8675842285156 3 392.867193 1175.57975 0.15211 5.976E-05 -0.49336 -0.00019382 -0.34125 -0.00013406 392.86690777152785 40.914 0.26472 40.912 40.81 41.075 -0.0017929 25 12 3 0 0 0 0.43305 1 21840 21840 10.899 10.899 1 3400300 40430 2737 27025 27582 47371 47371 -0.0010162402045352792 MPFNKEPKW 9 Unmodified _MPFNKEPKW_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2017822265625 3 392.867193 1175.57975 0.64146 0.00025201 -0.21072 -8.2786E-05 0.43074 0.00016922 392.8672657395243 45.395 0.5837 40.44 40.13 40.713 -4.9549 113 39 4 0 0 0 0.20389 3 27756 27756;27901;28068 22.775 22.775 1 99525000 40431 2737 27025 27582 47372;47373;47374 47372 -0.0010162402045352792 MPFNKEPKW 9 Unmodified _MPFNKEPKW_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 392.867193 1175.57975 0.15211 5.976E-05 -0.49336 -0.00019382 -0.34125 -0.00013406 392.86690777152785 40.914 0.26472 40.912 40.81 41.075 -0.0017929 0 0 NaN 10.899 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3400300 40432 2737 27025 27582 -0.0010162402045352792 MPFNKEPKWLF 11 Unmodified _MPFNKEPKWLF_ 0 0 0 nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA nc|ENSG00000110721|P35790-2|CHKA nc|ENSG00000110721|P35790-2|CHKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.5854797363281 3 479.584686 1435.73223 1.3031 0.00062494 -0.31945 -0.0001532 0.98363 0.00047173 479.58474785875114 94.509 0.30843 88.333 88.1 88.409 -6.1757 21 17 2 0 0 0 0.56863 1 62601 62601 12.929 4.9833 1 9449900 40433 2737 27026 27583 47375 47375 0.03179151656308932 MPFPAHLTY 9 Oxidation (M) _M(Oxidation (M))PFPAHLTY_ M(1)PFPAHLTY M(51)PFPAHLTY 0 0 1 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000542768.1_1_12:22637599-22643109:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.762451171875 2 546.762778 1091.511 -0.18624 -0.00010183 0.71515 0.00039102 0.52891 0.00028919 546.7630816591446 51.652 0.35728 51.219 50.988 51.346 -0.43367 33 18 3 0 0 0 0.038285 1 27888 27888 50.855 35.008 1 5958700 40434 16118 27027 27584 47376 47376 1796 -0.03109288320183623 MPFPAHLTY 9 Oxidation (M) _M(Oxidation (M))PFPAHLTY_ M(1)PFPAHLTY M(54)PFPAHLTY 0 0 1 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000542768.1_1_12:22637599-22643109:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7625122070312 2 546.762778 1091.511 NaN NaN NaN NaN NaN NaN NaN 51.921 1 51.487 50.987 51.987 -0.43367 0 0 0 0.060495 1 28021 28021 53.576 26.692 1 40435 16118 27027 27584 47377 47377 1796 -0.03109288320183623 MPFPAHLTY 9 Oxidation (M) _M(Oxidation (M))PFPAHLTY_ M(1)PFPAHLTY M(54)PFPAHLTY 0 0 1 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000542768.1_1_12:22637599-22643109:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7630004882812 2 546.762778 1091.511 -0.024062 -1.3156E-05 -0.55876 -0.00030551 -0.58283 -0.00031867 546.7623572643844 51.56 0.3351 51.506 51.401 51.736 -0.053871 31 16 3 0 0 0 0.03327 1 27936 27936 53.576 23.351 1 2444400 40436 16118 27027 27584 47378 47378 1796 -0.03109288320183623 MPFPAHLTY 9 Oxidation (M) _M(Oxidation (M))PFPAHLTY_ M(1)PFPAHLTY M(71)PFPAHLTY 0 0 1 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000542768.1_1_12:22637599-22643109:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7623901367188 2 546.762778 1091.511 NaN NaN NaN NaN NaN NaN NaN 51.343 1 51.289 50.789 51.789 -0.053871 0 0 0 0.026323 1 27784 27784 70.716 55.877 1 40437 16118 27027 27584 47379 47379 1796 -0.03109288320183623 MPFPAHLTY 9 Unmodified _MPFPAHLTY_ 0 0 0 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000542768.1_1_12:22637599-22643109:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7655639648438 2 538.76532 1075.51609 0.86952 0.00046847 -1.5674 -0.00084444 -0.69784 -0.00037597 538.7643743531712 69.028 0.74969 62.852 62.383 63.132 -6.1757 64 41 2 0 0 0 0.0081063 3 45019 44901;45019;45192 101.72 73.235 1 27493000 40438 16118 27027 27585 47380;47381;47382 47381 -0.018649844575520547 MPFPELPRPY 10 Unmodified _MPFPELPRPY_ 0 0 0 ENST00000604292.1_1_6:101337837-101337969:+|nuORF;ENST00000553976.1_1_14:55529677-55530620:+|nuORF;ENSG00000168175|ENST00000395468|MAPK1IP1L ENST00000604292.1_1_6:101337837-101337969:+|nuORF ENST00000604292.1_1_6:101337837-101337969:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.8196411132812 2 623.818084 1245.62162 0.45581 0.00028434 0.43788 0.00027315 0.89368 0.00055749 623.8187284235371 73.537 0.32997 73.581 73.384 73.713 0.043976 27 14 3 0 0 0 0.17714 1 40515 40515 36.506 25.011 1 2142700 40439 7727 27028 27586 47383 47383 0.008629316680980992 MPFPELPRPY 10 Unmodified _MPFPELPRPY_ 0 0 0 ENST00000604292.1_1_6:101337837-101337969:+|nuORF;ENST00000553976.1_1_14:55529677-55530620:+|nuORF;ENSG00000168175|ENST00000395468|MAPK1IP1L ENST00000604292.1_1_6:101337837-101337969:+|nuORF ENST00000604292.1_1_6:101337837-101337969:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 623.8170776367188 2 623.818084 1245.62162 NaN NaN NaN NaN NaN NaN NaN 84.594 1 78.418 77.918 78.918 -6.1757 0 0 0 0.095408 1 55663 55663 51.63 25.362 1 40440 7727 27028 27586 47384 47384 0.008629316680980992 MPFPNIRSAEL 11 Unmodified _MPFPNIRSAEL_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;ENST00000537136.1_1_12:31255149-31256026:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.8317260742188 2 637.831723 1273.64889 1.2295 0.00078419 -0.40104 -0.00025579 0.82843 0.0005284 637.8312849137832 79.443 0.78049 73.267 72.879 73.659 -6.1757 63 45 2 0 0 0 0.014741 3 52198 51878;52026;52198 76.825 54.089 1 16863000 40441 479 27029 27587 47385;47386;47387 47387 0.023014152084442685 MPFQDGKPFNL 11 Oxidation (M) _M(Oxidation (M))PFQDGKPFNL_ M(1)PFQDGKPFNL M(46)PFQDGKPFNL 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3174438476562 2 655.315906 1308.61726 0.30447 0.00019952 0.64454 0.00042238 0.94901 0.0006219 655.3162739962339 59.111 0.33908 58.621 58.432 58.771 -0.49079 34 15 3 0 0 0 0.073778 1 32118 32118 45.74 28.627 1 2868200 40442 12988;15781 27030 27588 47388 47388 1758 -0.024705775454776813 MPFQDGKPFNL 11 Oxidation (M) _M(Oxidation (M))PFQDGKPFNL_ M(1)PFQDGKPFNL M(62)PFQDGKPFNL 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.3145141601562 2 655.315906 1308.61726 0.91091 0.00059694 0.040528 2.6559E-05 0.95144 0.00062349 655.3154553932068 58.701 0.29569 58.64 58.486 58.782 -0.060719 37 14 3 0 0 0 0.01584 1 31986 31986 61.602 44.489 1 2273600 40443 12988;15781 27030 27588 47389 47389 1758 -0.024705775454776813 MPFQDGKPFNL 11 Unmodified _MPFQDGKPFNL_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3178100585938 2 647.318448 1292.62234 0.32753 0.00021201 0.2165 0.00014014 0.54402 0.00035216 647.319091683471 78.739 0.080849 72.563 72.515 72.596 -6.1757 7 4 2 0 0 0 8.6319E-10 1 51575 51575 117.84 75.998 1 8188300 40444 12988;15781 27030 27589 47390 47390 -0.012262736828688503 MPFQRAGVNF 10 Oxidation (M) _M(Oxidation (M))PFQRAGVNF_ M(1)PFQRAGVNF M(92)PFQRAGVNF 0 0 1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.790771484375 2 591.789858 1181.56516 -0.21669 -0.00012823 -0.26257 -0.00015539 -0.47926 -0.00028362 591.7898839027281 44.676 0.29066 44.654 44.486 44.777 -0.022064 31 15 3 0 0 0 0.0073675 1 23946 23946 92.491 67.092 1 27508000 40445 5044 27031 27590 47391 47391 921 -0.01835696168609502 MPFQRAGVNF 10 Oxidation (M) _M(Oxidation (M))PFQRAGVNF_ M(1)PFQRAGVNF M(85)PFQRAGVNF 0 0 1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.7909545898438 2 591.789858 1181.56516 NaN NaN NaN NaN NaN NaN NaN 44.124 1 44.102 43.602 44.602 -0.022064 0 0 0 0.024856 1 23667 23667 85.272 56.19 1 40446 5044 27031 27590 47392 47392 921 -0.01835696168609502 MPFQRAGVNF 10 Unmodified _MPFQRAGVNF_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.7933959960938 2 583.792401 1165.57025 0.9024 0.00052681 0.2001 0.00011681 1.1025 0.00064363 583.7919183774657 59.876 0.54424 53.761 53.572 54.116 -6.1147 61 30 3 0 0 0 0.0032765 2 38403 38403;38542 103.75 69.646 1 49353000 40447 5044 27031 27591 47393;47394 47393 -0.005913923060006709 MPFRAFGDVKF 11 Unmodified _MPFRAFGDVKF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2289428710938 3 438.893631 1313.65906 1.396 0.00061269 1.1839 0.00051959 2.5799 0.0011323 439.22936260654495 90.894 0.67052 84.719 84.203 84.873 -6.1757 56 39 2 0 0 0 0.66968 1 60045 60045 5.8681 2.5485 1 9009800 40448 16348 27032 27592 47395 47395 0.014780229336565753 MPFRGDTVI 9 Unmodified _MPFRGDTVI_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;nc|ENSG00000141556|Q9BTW9-5|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.268798828125 2 518.268227 1034.5219 0.9852 0.0005106 -0.60457 -0.00031333 0.38063 0.00019727 518.267718423917 57.279 0.43066 51.252 51.049 51.48 -6.0275 36 23 2 0 0 0 0.11784 2 36726 36582;36726 31.268 9.5217 1 36102000 40449 5350 27033 27593 47396;47397 47397 0.006021140541179193 MPFRGYAVL 9 Oxidation (M) _M(Oxidation (M))PFRGYAVL_ M(1)PFRGYAVL M(44)PFRGYAVL 0 0 1 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.27880859375 2 535.278595 1068.54264 -0.047966 -2.5675E-05 0.41654 0.00022297 0.36858 0.00019729 535.278850792862 53.403 0.52883 53.339 53.024 53.552 -0.063423 88 26 4 0 0 0 0.05447 1 28912 28912 43.858 25.723 1 62584000 40450 7904 27034 27594 47398 47398 1341 0.011107044337904881 MPFRGYAVL 9 Oxidation (M) _M(Oxidation (M))PFRGYAVL_ 0 0 1 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.278595 1068.54264 0.4052 0.0002169 -0.38128 -0.00020409 0.023922 1.2805E-05 535.2772636781564 53.585 0.13935 53.133 53.046 53.185 -0.45173 -0.10314 -0.00082752 NaN 43.858 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 3450900 40451 7904 27034 27594 1341 0.011107044337904881 MPFRGYAVL 9 Unmodified _MPFRGYAVL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2813110351562 2 527.281137 1052.54772 0.25123 0.00013247 -0.30948 -0.00016318 -0.058248 -3.0713E-05 527.2809700810627 61.568 0.31603 61.535 61.355 61.671 -0.032787 26 15 2 0 0 0 0.10734 1 33587 33587 32.305 19.774 1 13085000 40452 7904 27034 27595 47399 47399 0.02355008296399319 MPFRGYAVL 9 Unmodified _MPFRGYAVL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2825927734375 2 527.281137 1052.54772 0.79565 0.00041953 -0.18458 -9.7324E-05 0.61107 0.0003222 527.2811441059565 67.196 0.66953 61.021 60.769 61.438 -6.1757 81 37 3 0 0 0 0.32871 2 43684 43684;43833 15.847 11.64 1 30179000 40453 7904 27034 27595 47400;47401 47400 0.02355008296399319 MPFRVYHY 8 Unmodified _MPFRVYHY_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8510437011719 3 371.516383 1111.52732 1.212 0.00045027 -0.66257 -0.00024615 0.54942 0.00020412 371.8505864841268 46.963 0.20225 41.882 41.801 42.003 -5.0805 34 21 2 0 0 0 0.50586 1 29124 29124 26.884 22.355 1 30601000 40454 1985 27035 27596 47402 47402 -0.02398162363397205 MPFSFPMAHF 10 2 Oxidation (M) _M(Oxidation (M))PFSFPM(Oxidation (M))AHF_ M(1)PFSFPM(1)AHF M(97)PFSFPM(97)AHF 0 0 2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.2678833007812 2 622.26737 1242.52019 0.78399 0.00048785 -0.95684 -0.00059541 -0.17285 -0.00010756 622.2673194587721 69.073 0.55667 69.104 68.776 69.333 0.030914 73 26 4 0 0 0 0.0054975 2 37958 37854;37958 97.075 71.054 1 17884000 40455 8634 27036 27597 47403;47404 47404 1460;1461 -0.09137263026150322 MPFSFPMAHF 10 Oxidation (M) _MPFSFPM(Oxidation (M))AHF_ MPFSFPM(1)AHF M(-59)PFSFPM(59)AHF 0 0 1 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.2685546875 2 614.269912 1226.52527 0.56165 0.00034501 -0.62309 -0.00038274 -0.061432 -3.7736E-05 614.2700003655939 78.166 0.45291 78.218 78.037 78.49 0.052452 33 18 2 0 0 0 0.031389 2 43250 43136;43250 67.344 44.608 2 2239300 40456 8634 27036 27598 47405;47406 47406 1460;1461 -0.07892959163541491 MPFSFPMAHF 10 Oxidation (M) _MPFSFPM(Oxidation (M))AHF_ MPFSFPM(1)AHF M(-63)PFSFPM(63)AHF 0 0 1 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2684326171875 2 614.269912 1226.52527 0.72338 0.00044435 -0.23393 -0.0001437 0.48945 0.00030065 614.2697406068811 91.356 0.5104 85.18 84.925 85.435 -6.1757 56 28 3 0 0 0 0.031389 1 60355 60355 67.344 44.686 2 11738000 40457 8634 27036 27598 47407 47407 1460;1461 -0.07892959163541491 MPFSFPMAHF 10 Oxidation (M) _M(Oxidation (M))PFSFPMAHF_ M(1)PFSFPMAHF M(90)PFSFPM(-90)AHF 0 0 1 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2703857421875 2 614.269912 1226.52527 0.91305 0.00056086 -1.2711 -0.00078081 -0.35806 -0.00021994 614.7709530609902 94.724 0.42805 88.548 88.392 88.82 -6.1757 55 24 3 0 0 0 0.0054975 1 62722 62722 97.075 71.675 2 14746000 40458 8634 27036 27598 47408 47408 1460;1461 -0.07892959163541491 MPFSFPMAHF 10 Unmodified _MPFSFPMAHF_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.3555297851562 2 606.272455 1210.53036 0.13597 8.2436E-05 0.06175 3.7437E-05 0.19772 0.00011987 606.2726824422643 99.086 0.15019 92.91 92.824 92.974 -6.1757 21 8 3 0 0 0 0.079872 1 65878 65878 77.984 53.964 1 139450000 40459 8634 27036 27599 47409 47409 -0.06648655300909923 MPFSIGQVTM 10 2 Oxidation (M) _M(Oxidation (M))PFSIGQVTM(Oxidation (M))_ M(1)PFSIGQVTM(1) M(59)PFSIGQVTM(59) 0 0 2 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.763427734375 2 571.76466 1141.51477 -0.73774 -0.00042181 -0.06075 -3.4735E-05 -0.79849 -0.00045655 571.764297084561 56.263 0.30638 55.777 55.654 55.96 -0.48554 21 15 2 0 0 0 0.04925 1 30542 30542 58.679 36.932 1 2928900 40460 7591 27037 27600 47410 47410 1296;1297 -0.050329866086258335 MPFSIGQVTM 10 2 Oxidation (M) _M(Oxidation (M))PFSIGQVTM(Oxidation (M))_ M(1)PFSIGQVTM(1) M(48)PFSIGQVTM(48) 0 0 2 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7634887695312 2 571.76466 1141.51477 NaN NaN NaN NaN NaN NaN NaN 56.45 1 55.964 55.464 56.464 -0.48554 0 0 0 0.14292 1 30653 30653 47.749 30.806 1 40461 7591 27037 27600 47411 47411 1296;1297 -0.050329866086258335 MPFSIGQVTM 10 2 Oxidation (M) _M(Oxidation (M))PFSIGQVTM(Oxidation (M))_ 0 0 2 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.76466 1141.51477 -0.43152 -0.00024673 0.70788 0.00040474 0.27637 0.00015802 571.7644764294088 56.234 0.21301 56.165 55.961 56.174 -0.068737 0.19392 0.00033563 NaN 58.679 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2107900 40462 7591 27037 27600 1296;1297 -0.050329866086258335 MPFSIGQVTM 10 Unmodified _MPFSIGQVTM_ 0 0 0 ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214;ENST00000534709.1_1_11:117152603-117155864:+|nuORF ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MSMS AL20221201_MKP_PDAC_01 4 555.770263671875 2 555.769745 1109.52494 NaN NaN NaN NaN NaN NaN NaN 90.92 1 84.745 84.245 85.245 -6.1757 0 0 0 0.24996 1 60085 60085 39.95 19.496 1 40463 7591 27037 27601 47412 47412 -0.02544378883385434 MPFSWPHQL 9 Oxidation (M) _M(Oxidation (M))PFSWPHQL_ M(1)PFSWPHQL M(65)PFSWPHQL 0 0 1 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.275634765625 2 579.773677 1157.5328 1.3102 0.0007596 0.0042482 2.463E-06 1.3144 0.00076207 579.7735753406915 63.808 0.54573 63.798 63.571 64.117 -0.010532 66 26 3 0 0 0 0.018301 2 34975 34860;34975 65.235 51.329 1 4897600 40464 262 27038 27602 47413;47414 47414 22 -0.039664835716166635 MPFSWPHQL 9 Unmodified _MPFSWPHQL_ 0 0 0 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 MSMS AL20221201_MKP_PDAC_01 4 571.7756958007812 2 571.776219 1141.53789 NaN NaN NaN NaN NaN NaN NaN 85.854 1 79.678 79.178 80.178 -6.1757 0 0 0 0.053277 1 56569 56569 56.177 31.503 1 40465 262 27038 27603 47415 47415 -0.027221797089850952 MPFSWPHQL 9 Unmodified _MPFSWPHQL_ 0 0 0 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 MSMS AL20221201_MKP_PDAC_01 4 571.7761840820312 2 571.776219 1141.53789 NaN NaN NaN NaN NaN NaN NaN 86.158 1 79.982 79.482 80.482 -6.1757 0 0 0 0.017438 1 56792 56792 81.89 49.773 1 40466 262 27038 27603 47416 47416 -0.027221797089850952 MPFTIAAEKVY 11 Oxidation (M) _M(Oxidation (M))PFTIAAEKVY_ M(1)PFTIAAEKVY M(48)PFTIAAEKVY 0 0 1 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8309326171875 2 643.328482 1284.64241 0.27126 0.00017451 -0.076467 -4.9193E-05 0.19479 0.00012531 643.328840987696 55.539 0.33041 55.061 54.883 55.213 -0.47798 40 15 3 0 0 0 0.064513 1 30097 30097 47.749 39.003 1 3585300 40467 10258 27039 27604 47417 47417 1667 0.01147477257063656 MPFTTVSEL 9 Unmodified _MPFTTVSEL_ 0 0 0 ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24;ENST00000491466.5_1_17:38175784-38176226:-|nuORF ENSG00000008838|ENST00000394128|MED24 ENSG00000008838|ENST00000394128|MED24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7543334960938 2 512.754618 1023.49468 0.51893 0.00026608 -0.52784 -0.00027065 -0.0089103 -4.5688E-06 512.754556124297 72.782 0.55087 72.306 71.878 72.429 -0.47588 42 25 2 0 0 0 0.052168 1 39786 39786 44.407 24.968 1 2825100 40468 396 27040 27605 47418 47418 -0.016124142769172067 MPFTTVSEL 9 Unmodified _MPFTTVSEL_ 0 0 0 ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24;ENST00000491466.5_1_17:38175784-38176226:-|nuORF ENSG00000008838|ENST00000394128|MED24 ENSG00000008838|ENST00000394128|MED24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7544555664062 2 512.754618 1023.49468 0.60594 0.0003107 -1.0793 -0.00055342 -0.47336 -0.00024272 512.7542848789236 80.442 0.46236 74.267 74.054 74.516 -6.1757 65 25 4 0 0 0 0.0077963 3 52784 52666;52784;52910 109.63 58.774 1 49288000 40469 396 27040 27605 47419;47420;47421 47420 -0.016124142769172067 MPFVGLRLEL 10 Oxidation (M) _M(Oxidation (M))PFVGLRLEL_ M(1)PFVGLRLEL M(50)PFVGLRLEL 0 0 1 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8342895507812 2 595.833734 1189.65292 1.0004 0.00059609 -0.2524 -0.00015039 0.74803 0.0004457 595.8335974170172 97.312 0.19392 91.136 90.992 91.186 -6.1757 14 10 2 0 0 0 0.087043 1 64505 64505 49.554 25.534 1 9843500 40470 8887 27041 27606 47422 47422 1498 0.06567504702138649 MPFVHVVY 8 Oxidation (M) _M(Oxidation (M))PFVHVVY_ M(1)PFVHVVY M(52)PFVHVVY 0 0 1 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.25439453125 2 504.254588 1006.49462 -0.241 -0.00012152 -0.50881 -0.00025657 -0.7498 -0.00037809 504.25441016690905 51.852 0.71554 51.419 51.156 51.871 -0.43367 134 36 6 0 0 0 0.32738 1 28033 28033 52.334 10.517 1 727660000 40471 15816 27042 27607 47423 47423 1780 -0.00836369486262356 MPFVHVVY 8 Oxidation (M) _M(Oxidation (M))PFVHVVY_ M(1)PFVHVVY M(77)PFVHVVY 0 0 1 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2552795410156 2 504.254588 1006.49462 -0.061224 -3.0872E-05 -0.188 -9.4801E-05 -0.24923 -0.00012567 504.25450557562357 51.524 0.71739 51.47 51.226 51.944 -0.053871 122 35 6 0 0 0 0.18189 2 27996 27896;27996 77.196 24.862 1 376590000 40472 15816 27042 27607 47424;47425 47425 1780 -0.00836369486262356 MPFVHVVY 8 Oxidation (M) _M(Oxidation (M))PFVHVVY_ M(1)PFVHVVY M(77)PFVHVVY 0 0 1 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2548217773438 2 504.254588 1006.49462 0.97847 0.0004934 -0.38078 -0.00019201 0.59769 0.00030139 504.2544544992202 57.373 0.74771 51.345 51.005 51.753 -6.0275 134 41 4 0 0 0 0.18189 3 36630 36500;36630;36743 77.196 24.862 1 841100000 40473 15816 27042 27607 47426;47427;47428 47427 1780 -0.00836369486262356 MPFVHVVY 8 Unmodified _MPFVHVVY_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2551879882812 2 496.257131 990.499709 0.51193 0.00025405 -1.2474 -0.00061903 -0.73547 -0.00036498 496.2565343408119 63.84 0.41991 63.355 63.172 63.592 -0.48512 75 22 4 0 0 0 0.18189 1 34752 34752 77.196 24.862 1 58675000 40474 15816 27042 27608 47429 47429 0.004079343763578436 MPFVHVVY 8 Unmodified _MPFVHVVY_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.25732421875 2 496.257131 990.499709 0.71112 0.0003529 -0.63075 -0.00031301 0.080374 3.9886E-05 496.2568794145062 63.412 0.569 63.391 63.182 63.751 -0.021614 101 27 7 0 0 0 0.18189 2 34727 34625;34727 77.196 24.862 1 244290000 40475 15816 27042 27608 47430;47431 47431 0.004079343763578436 MPFVHVVY 8 Unmodified _MPFVHVVY_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2570190429688 2 496.257131 990.499709 1.0596 0.00052581 -0.51829 -0.00025721 0.54126 0.00026861 496.25703148144436 72.064 2.9112 65.888 64.168 67.079 -6.1757 258 151 3 0 0 0 0.079329 16 46246 45980;46123;46246;46370;46491;46611;46740;46864;47013;47159;47279;47399;47519;47636;47763;47879 108.76 50.11 1 232280000 40476 15816 27042 27608 47432;47433;47434;47435;47436;47437;47438;47439;47440;47441;47442;47443;47444;47445;47446;47447 47434 0.004079343763578436 MPFVHVVY 8 Unmodified _MPFVHVVY_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2570495605469 2 496.257131 990.499709 0.98203 0.00048734 -0.19598 -9.7255E-05 0.78605 0.00039008 496.2570966704985 74.088 3.3657 67.912 66.351 69.717 -6.1757 510 174 4 0 0 0 0.12772 11 48114 48001;48114;48226;48344;48594;48716;48843;48969;49099;49226;49578 91.927 39.593 1 265590000 40477 15816 27042 27608 47448;47449;47450;47451;47452;47453;47454;47455;47456;47457;47458 47449 0.004079343763578436 MPFVHVVY 8 Unmodified _MPFVHVVY_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.2583312988281 2 496.257131 990.499709 NaN NaN NaN NaN NaN NaN NaN 68.641 1 62.465 61.965 62.965 -6.1757 0 0 0 0.12797 1 44813 44813 91.927 27.846 1 40478 15816 27042 27608 47459 47459 0.004079343763578436 MPFVHVVYAH 10 Unmodified _MPFVHVVYAH_ 0 0 0 ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF ENST00000602122.5_1_19:35739636-35739768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5398254394531 3 400.539188 1198.59573 1.0046 0.00040237 -0.084815 -3.3972E-05 0.91975 0.0003684 400.5390849107339 50.38 0.26517 50.332 50.21 50.475 -0.048828 22 12 2 0 0 0 0.52097 1 27255 27255 15.248 10.842 1 1113700 40479 15816 27043 27609 47460 47460 0.004380822164421261 MPFVRGQSF 9 Oxidation (M) _M(Oxidation (M))PFVRGQSF_ M(1)PFVRGQSF M(59)PFVRGQSF 0 0 1 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.765869140625 2 542.765852 1083.51715 0.064174 3.4831E-05 0.13579 7.3705E-05 0.19997 0.00010854 542.7658190591127 38.262 0.43575 38.279 38.025 38.46 0.01704 35 19 2 0 0 0 0.024882 1 20356 20356 58.679 35.53 1 3130700 40480 7822 27044 27610 47461 47461 1330 -0.021267700886483 MPFVWGPF 8 Unmodified _MPFVWGPF_ 0 0 0 REV__ENST00000480898.1_22:24381178-24381424:-|nuORF REV__ENST00000480898.1_22:24381178-24381424:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7406616210938 2 490.738574 979.462595 NaN NaN NaN NaN NaN NaN NaN 80.969 1 80.969 80.469 81.469 0 0 0 0 0.97444 1 44950 44950 2.8892 0 1 + 40481 27682 27045 27611 47462 47462 -0.02795737169401491 MPFYNPAQL 9 Unmodified _MPFYNPAQL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.762939453125 2 540.762778 1079.511 0.53711 0.00029045 -1.353 -0.00073166 -0.8159 -0.00044121 540.7627127723898 81.953 0.47054 75.777 75.55 76.02 -6.1757 43 26 2 0 0 0 0.023164 2 53794 53794;53926 60.39 18.434 1 13975000 40482 5929 27046 27612 47463;47464 47463 -0.025572883201675722 MPGGIRCW 8 Unmodified _MPGGIRCW_ 0 0 0 REV__ENST00000234454.5_1_2:73118987-73119059:+|nuORF REV__ENST00000234454.5_1_2:73118987-73119059:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2173461914062 2 460.217483 918.420413 NaN NaN NaN NaN NaN NaN NaN 26.379 1 26.406 25.906 26.906 0.026951 0 0 0 0.97444 1 13681 13681 2.5775 0.27475 1 + 40483 24827 27047 27613 47465 47465 -0.04206035849449563 MPGKTAIEL 9 Oxidation (M) _M(Oxidation (M))PGKTAIEL_ M(1)PGKTAIEL M(60)PGKTAIEL 0 0 1 ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L ENSG00000121486|ENST00000367506|TRMT1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2630920410156 2 488.26261 974.510668 0.53447 0.00026096 0.51734 0.0002526 1.0518 0.00051356 488.26286517251094 38.678 0.4817 38.678 38.376 38.858 0 46 25 2 0 0 0 0.023481 2 20626 20518;20626 60.074 11.728 1 6959500 40484 3586 27048 27614 47466;47467 47467 634 0.02239291959961065 MPGLETAVVF 10 Unmodified _MPGLETAVVF_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MSMS AL20221201_MKP_PDAC_01 4 532.2778930664062 2 532.27826 1062.54197 NaN NaN NaN NaN NaN NaN NaN 94.368 1 88.192 87.692 88.692 -6.1757 0 0 0 0.48706 1 62501 62501 26.884 9.9414 1 40485 5664 27049 27615 47468 47468 0.013198649940704854 MPGNLQHYGRF 11 Unmodified _MPGNLQHYGRF_ 0 0 0 ENSG00000122674|ENST00000325974|CCZ1;ENSG00000146574|ENST00000316731|CCZ1B ENSG00000122674|ENST00000325974|CCZ1 ENSG00000122674|ENST00000325974|CCZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8198852539062 2 660.319314 1318.62407 0.44524 0.000294 -2.0538 -0.0013561 -1.6085 -0.0010621 660.3184114002129 19.969 0.17219 19.977 19.894 20.066 0.0078487 18 8 3 0 0 0 0.71618 1 10170 10170 2.7352 0.89096 1 1103900 40486 3653 27050 27616 47469 47469 -0.02249219874283881 MPGPPAHGF 9 Unmodified _MPGPPAHGF_ 0 0 0 ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5;ETV5|p.P276A|1|0.05|ENSG00000244405|chr3:186065897-186065897|G/C|missense_variant;ENST00000489830.5_1_3:185782080-185797655:-|nuORF ENSG00000244405|ENST00000306376|ETV5 ENSG00000244405|ENST00000306376|ETV5 MSMS AL20221201_MKP_PDAC_01 4 455.7167663574219 2 455.71563 909.416708 NaN NaN NaN NaN NaN NaN NaN 43.782 1 39.018 38.518 39.518 -4.7648 0 0 0 0.15264 1 26637 26637 36.466 23.935 1 40487 10729 27051 27617 47470 47470 -0.0416238235164883 MPGTHTVTL 9 Unmodified _MPGTHTVTL_ 0 0 0 ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;ENST00000522665.5_1_8:134254200-134261004:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.7483520507812 2 478.747127 955.479702 NaN NaN NaN NaN NaN NaN NaN 43.523 1 38.758 38.258 39.258 -4.7648 0 0 0 0.36554 1 26453 26453 21.747 0 1 40488 2206 27052 27618 47471 47471 0.00018138645748422277 MPGYSHWY 8 Unmodified _MPGYSHWY_ 0 0 0 nc|ENSG00000006377|P56179|DLX6;ENST00000493273.2_1_7:96636558-96639356:+|nuORF;nc|ENSG00000006377|P56179-2|DLX6;ENSG00000006377|ENST00000518156|DLX6 nc|ENSG00000006377|P56179|DLX6 nc|ENSG00000006377|P56179|DLX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.71826171875 2 520.71837 1039.42219 0.91006 0.00047388 0.079571 4.1434E-05 0.98963 0.00051532 520.7184409930443 46.368 0.47591 46.368 46.131 46.607 0 40 22 2 0 0 0 0.80143 1 25295 25295 5.7604 0 1 4842500 40489 333 27053 27619 47472 47472 -0.09594703559832851 MPHAPIGL 8 Oxidation (M) _M(Oxidation (M))PHAPIGL_ M(1)PHAPIGL M(42)PHAPIGL 0 0 1 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2254028320312 2 426.225831 850.437109 -0.22503 -9.5913E-05 0.035147 1.4981E-05 -0.18988 -8.0933E-05 426.22578135214775 41.823 0.24808 41.823 41.709 41.957 0 22 12 2 0 0 0 0.42709 1 22614 22614 41.817 17.143 1 2209100 40490 10913 27054 27620 47473 47473 1737 0.005907883081476939 MPHAPIGLYF 10 Oxidation (M) _M(Oxidation (M))PHAPIGLYF_ M(1)PHAPIGLYF M(40)PHAPIGLYF 0 0 1 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2916259765625 2 581.291702 1160.56885 0.76296 0.0004435 -0.66372 -0.00038581 0.099237 5.7686E-05 581.2912398263635 69.874 0.54051 69.905 69.707 70.247 0.030914 74 27 3 0 0 0 0.14518 1 38500 38500 40.449 19.995 1 14536000 40491 10913 27055 27621 47474 47474 1737 -0.005010263947724525 MPHAPIGLYF 10 Unmodified _MPHAPIGLYF_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7977905273438 2 573.294245 1144.57394 0.13144 7.5355E-05 0.76309 0.00043747 0.89453 0.00051283 573.294717491162 77.121 0.286 77.171 77.01 77.296 0.050102 28 11 3 0 0 0 0.52097 1 42540 42540 24.674 4.2203 1 3803100 40492 10913 27055 27622 47475 47475 0.007432774678591159 MPHAPIGLYF 10 Unmodified _MPHAPIGLYF_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2952880859375 2 573.294245 1144.57394 1.2521 0.00071781 -0.041651 -2.3878E-05 1.2104 0.00069393 573.2941753080802 96.103 0.33633 89.927 89.748 90.084 -6.1757 38 20 2 0 0 0 0.42143 1 63583 63583 32.117 6.7177 1 140590000 40493 10913 27055 27622 47476 47476 0.007432774678591159 MPHDAIILL 9 Oxidation (M) _M(Oxidation (M))PHDAIILL_ M(1)PHDAIILL M(51)PHDAIILL 0 0 1 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7869262695312 2 519.786253 1037.55795 0.56686 0.00029465 -1.2178 -0.000633 -0.65096 -0.00033836 519.7856973692462 66.715 0.75459 66.715 66.216 66.971 0 97 34 4 0 0 0 0.038285 2 37119 37119;37224 50.855 22.368 1 13936000 40494 1023 27056 27623 47477;47478 47477 170 0.040675712309621304 MPHDAIILL 9 Oxidation (M) _M(Oxidation (M))PHDAIILL_ M(1)PHDAIILL M(51)PHDAIILL 0 0 1 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.78662109375 2 519.786253 1037.55795 0.23603 0.00012269 -0.045389 -2.3593E-05 0.19064 9.9094E-05 519.7863320534993 67.007 0.67247 66.524 66.216 66.888 -0.48323 81 31 4 0 0 0 0.038285 1 36597 36597 50.855 16.668 1 10802000 40495 1023 27056 27623 47479 47479 170 0.040675712309621304 MPHDAIILL 9 Unmodified _MPHDAIILL_ 0 0 0 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7894897460938 2 511.788795 1021.56304 0.54155 0.00027716 -0.90619 -0.00046378 -0.36464 -0.00018662 511.78823907699604 73.706 0.37007 73.231 73.042 73.412 -0.47588 36 16 3 0 0 0 0.2143 1 40301 40301 21.747 8.2388 1 7190700 40496 1023 27056 27624 47480 47480 0.0531187509358233 MPHDAIILL 9 Unmodified _MPHDAIILL_ 0 0 0 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 ENSG00000070269|ENST00000261556|TMEM260 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7881774902344 2 511.788795 1021.56304 0.011553 5.9127E-06 -1.1972 -0.00061273 -1.1857 -0.00060682 511.78860656926935 93.111 0.96173 86.935 86.608 87.57 -6.1757 105 65 2 0 0 0 0.095405 2 61659 61659;61793 34.102 9.4286 1 33909000 40497 1023 27056 27624 47481;47482 47481 0.0531187509358233 MPHDLITQL 9 Oxidation (M) _M(Oxidation (M))PHDLITQL_ M(1)PHDLITQL M(74)PHDLITQL 0 0 1 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.278564453125 2 542.278792 1082.54303 -0.13532 -7.3379E-05 -0.027891 -1.5125E-05 -0.16321 -8.8504E-05 542.2787359756841 52.088 0.51062 52.088 51.842 52.353 0 71 22 4 0 0 0 0.012148 2 28722 28722;28831 74.423 45.936 1 75746000 40498 4231 27057 27625 47483;47484 47483 749 0.005060793629809268 MPHDLITQL 9 Oxidation (M) _M(Oxidation (M))PHDLITQL_ M(1)PHDLITQL M(78)PHDLITQL 0 0 1 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2791137695312 2 542.278792 1082.54303 0.31167 0.00016901 0.14065 7.6271E-05 0.45232 0.00024529 542.2789129794362 52.468 0.62814 52.035 51.789 52.418 -0.43367 84 31 4 0 0 0 0.010818 2 28392 28279;28392 78.149 45.844 1 44746000 40499 4231 27057 27625 47485;47486 47486 749 0.005060793629809268 MPHDLITQL 9 Oxidation (M) _M(Oxidation (M))PHDLITQL_ M(1)PHDLITQL M(64)PHDLITQL 0 0 1 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2803344726562 2 542.278792 1082.54303 0.13065 7.0848E-05 0.28467 0.00015437 0.41532 0.00022522 542.7801350589768 57.981 0.60818 51.953 51.698 52.306 -6.0275 94 33 4 0 0 0 0.019303 2 37256 37125;37256 64.236 38.837 1 147630000 40500 4231 27057 27625 47487;47488 47488 749 0.005060793629809268 MPHDLITQL 9 Unmodified _MPHDLITQL_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2809448242188 2 534.281334 1066.54812 0.31853 0.00017018 -0.075975 -4.0592E-05 0.24255 0.00012959 534.2813105936401 65.346 0.4963 59.17 58.917 59.414 -6.1757 70 27 3 0 0 0 0.06294 2 42316 42316;42442 41.84 13.353 1 189370000 40501 4231 27057 27626 47489;47490 47489 0.017503832255897578 MPHEDCITAL 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PHEDC(Carbamidomethyl (C))ITAL_ MPHEDC(1)ITAL M(1)PHEDCITAL MPHEDC(68)ITAL M(68)PHEDCITAL 0 1 1 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7627563476562 2 601.762649 1201.51074 -0.043788 -2.635E-05 -0.73032 -0.00043948 -0.77411 -0.00046583 601.7623767824351 39.654 0.45279 39.654 39.4 39.853 0 73 21 4 0 0 0 0.02987 2 21189 21189;21304 68.081 38.999 1 14600000 40502 3117 27058 27627 47491;47492 47491 323 548 -0.08195076102333587 MPHEDCITAL 10 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PHEDC(Carbamidomethyl (C))ITAL_ MPHEDC(1)ITAL M(1)PHEDCITAL MPHEDC(42)ITAL M(42)PHEDCITAL 0 1 1 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.2630615234375 2 601.762649 1201.51074 -0.059219 -3.5636E-05 0.073299 4.4109E-05 0.01408 8.473E-06 601.7627247490515 44.367 0.48142 39.514 39.294 39.775 -4.852 50 35 2 0 0 0 0.13391 1 26990 26990 41.84 24.727 1 13410000 40503 3117 27058 27627 47493 47493 323 548 -0.08195076102333587 MPHEDGPLYY 10 Oxidation (M) _M(Oxidation (M))PHEDGPLYY_ M(1)PHEDGPLYY M(44)PHEDGPLYY 0 0 1 ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6 ENST00000490483.5_3_19:36500194-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2593994140625 2 619.263339 1236.51212 0.20881 0.00012931 -2.3978 -0.0014849 -2.189 -0.0013556 619.2618825203734 40.239 0.3222 40.239 40.03 40.352 0 26 15 2 0 0 0 0.11755 1 21637 21637 43.858 24.601 1 1954000 40504 14257 27059 27628 47494 47494 1772 -0.09667118741913328 MPHEELPSL 9 Oxidation (M) _M(Oxidation (M))PHEELPSL_ M(1)PHEELPSL M(67)PHEELPSL 0 0 1 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.756103515625 2 534.755149 1067.49575 0.72526 0.00038784 0.34045 0.00018206 1.0657 0.00056989 534.7553116959624 46.485 0.44556 46.485 46.21 46.656 0 71 20 4 0 0 0 0.016184 2 25285 25285;25390 67.344 26.835 1 10479000 40505 5714 27060 27629 47495;47496 47495 1038 -0.03530199908027498 MPHEKHYTL 9 Unmodified _MPHEKHYTL_ 0 0 0 nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4 nc|ENSG00000142731|O00444-3|PLK4 nc|ENSG00000142731|O00444-3|PLK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.85986328125 3 385.858698 1154.55426 1.0763 0.00041528 -0.056411 -2.1767E-05 1.0198 0.00039351 385.8587611570073 22.305 0.39541 19.57 19.354 19.749 -2.7348 64 20 4 0 0 0 0.07087 2 11920 11920;12026 30.703 10.123 1 40854000 40506 5444 27061 27630 47497;47498 47497 -0.016830985428896383 MPHEKHYTL 9 Unmodified _MPHEKHYTL_ 0 0 0 nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4 nc|ENSG00000142731|O00444-3|PLK4 nc|ENSG00000142731|O00444-3|PLK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2846069335938 2 578.284408 1154.55426 0.70336 0.00040674 -0.61458 -0.0003554 0.088775 5.1337E-05 578.2840920935336 22.316 0.22533 19.582 19.412 19.638 -2.7348 19 11 3 0 0 0 0.047788 1 11978 11978 45.7 30.861 1 2893400 40507 5444 27061 27630 47499 47499 -0.016830985428896383 MPHFFRLF 8 Unmodified _MPHFFRLF_ 0 0 0 nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1 nc|ENSG00000106366|P05121-2|SERPINE1 nc|ENSG00000106366|P05121-2|SERPINE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5257873535156 3 365.52499 1093.55314 NaN NaN NaN NaN NaN NaN NaN 43.919 1 43.919 43.419 44.419 0 0 0 0 0.97444 1 23881 23881 1.6526 0.45928 1 40508 2421 27062 27631 47500 47500 0.01010731878864135 MPHHFLTFN 9 Unmodified _MPHHFLTFN_ 0 0 0 REV__ENSG00000166828|ENST00000300061|SCNN1G REV__ENSG00000166828|ENST00000300061|SCNN1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2741088867188 2 572.273844 1142.53313 0.92754 0.0005308 -0.6721 -0.00038463 0.25543 0.00014618 572.2730214155168 47.112 0.41798 42.031 41.919 42.337 -5.0805 50 29 2 0 0 0 0.14602 1 29306 29306 28.487 4.4663 1 29824000 + 40509 22155 27063 27632 47501 47501 -0.032430638517553234 MPHHTPHQL 9 Unmodified _MPHHTPHQL_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK;nc|ENSG00000090061|O75909-2|CCNK;nc|ENSG00000090061|O75909-1|CCNK;ENST00000553865.1_1_14:99968556-99969378:+|nuORF ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5148315429688 3 366.515154 1096.52363 0.80488 0.000295 0.51592 0.00018909 1.3208 0.00048409 366.51523501290205 16.54 0.23219 13.983 13.868 14.1 -2.557 78 33 3 0 0 0 0.12424 1 8531 8531 28.495 17.671 1 10002000 40510 1548 27064 27633 47502 47502 -0.020768321372770515 MPHLFVYI 8 Unmodified _MPHLFVYI_ 0 0 0 REV__ENSG00000185899|ENST00000332690|TAS2R60 REV__ENSG00000185899|ENST00000332690|TAS2R60 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2745971679688 2 510.272781 1018.53101 NaN NaN NaN NaN NaN NaN NaN 75.628 1 75.628 75.128 76.128 0 0 0 0 0.94749 1 42065 42065 11.114 2.5212 1 + 40511 23531 27065 27634 47503 47503 0.022485074104451996 MPHLPLASF 9 Unmodified _MPHLPLASF_ 0 0 0 ENST00000477288.5_1_6:30882610-30884901:+|nuORF;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2 ENST00000477288.5_1_6:30882610-30884901:+|nuORF ENST00000477288.5_1_6:30882610-30884901:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7681274414062 2 506.767863 1011.52117 1.1186 0.00056685 -0.023291 -1.1803E-05 1.0953 0.00055505 506.7676060087548 94.173 0.52063 87.997 87.683 88.204 -6.1757 43 29 2 0 0 0 0.027803 1 62316 62316 56.541 16.093 1 7873700 40512 4928 27066 27635 47504 47504 0.015873194050755046 MPHNKGTRF 9 Unmodified _MPHNKGTRF_ 0 0 0 ENSG00000177494|ENST00000317012|ZBED2 ENSG00000177494|ENST00000317012|ZBED2 ENSG00000177494|ENST00000317012|ZBED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.1877136230469 3 363.187037 1086.53928 0.82665 0.00030023 1.001 0.00036354 1.8276 0.00066377 363.18751175504417 15.079 0.16627 12.552 12.47 12.637 -2.5273 44 23 2 0 0 0 0.27545 1 7697 7697 13.519 6.7955 1 4595700 40513 8690 27067 27636 47505 47505 -0.0005254562022400933 MPHPETGKDLY 11 Unmodified _MPHPETGKDLY_ 0 0 0 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.8711853027344 3 429.872784 1286.59652 1.1013 0.0004734 -0.86017 -0.00036976 0.24108 0.00010364 430.2068060863236 34.957 0.35523 30.862 30.668 31.023 -4.0951 46 20 3 0 0 0 0.37825 1 20162 20162 23.016 9.4008 1 12973000 40514 5109 27068 27637 47506 47506 -0.035311679251435635 MPHRFKVHNY 10 Unmodified _MPHRFKVHNY_ 0 0 0 ENSG00000163932|ENST00000330452|PRKCD;nc|ENSG00000163932|Q05655-2|PRKCD ENSG00000163932|ENST00000330452|PRKCD ENSG00000163932|ENST00000330452|PRKCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.8960266113281 3 443.560875 1327.66079 1.3136 0.00058267 -0.60151 -0.00026681 0.71211 0.00031586 443.56079012027135 20.951 0.29 18.258 18.11 18.4 -2.693 38 16 4 0 0 0 0.33553 1 11157 11157 16.566 4.3911 1 6087800 40515 7098 27069 27638 47507 47507 0.010070767423258076 MPHSGSVYY 9 Unmodified _MPHSGSVYY_ 0 0 0 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7294921875 2 520.728935 1039.44332 0.70713 0.00036822 1.1352 0.00059113 1.8423 0.00095936 520.7288047060198 35.443 0.40266 31.25 31.023 31.425 -4.1928 51 24 3 0 0 0 0.078417 1 20476 20476 38.151 9.6643 1 21109000 40516 6251 27070 27639 47508 47508 -0.07482738250973853 MPHSSSAKL 9 Unmodified _MPHSSSAKL_ 0 0 0 ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57457792-57467500:+|nuORF ENST00000529480.1_1_11:57457792-57467500:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.244140625 2 479.244752 956.474951 0.7952 0.00038109 0.21168 0.00010145 1.0069 0.00048254 479.24473687081684 18.431 0.21327 15.809 15.709 15.923 -2.6215 36 21 2 0 0 0 0.07087 1 9709 9709 39.95 21.815 1 2596300 40517 6469 27071 27640 47509 47509 -0.005027454970218059 MPHVPITTL 9 Oxidation (M) _M(Oxidation (M))PHVPITTL_ M(1)PHVPITTL M(40)PHVPITTL 0 0 1 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7789916992188 2 512.778428 1023.5423 0.323 0.00016562 1.3679 0.00070146 1.6909 0.00086708 512.779348307275 50.928 0.23914 50.514 50.358 50.597 -0.41351 19 11 2 0 0 0 0.068777 1 27442 27442 40.449 6.3461 1 2817200 40518 7161 27072 27641 47510 47510 1238 0.03147284713918452 MPHVTEAY 8 Unmodified _MPHVTEAY_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2180480957031 2 474.218203 946.421853 -0.43877 -0.00020807 0.47986 0.00022756 0.041086 1.9484E-05 474.21818820440336 33.168 0.2142 33.168 33.029 33.243 0 18 10 2 0 0 0 0.41521 1 17362 17362 42.968 16.627 1 1874100 40519 9027 27073 27642 47511 47511 -0.053501232796861586 MPHVTEAY 8 Oxidation (M) _M(Oxidation (M))PHVTEAY_ M(1)PHVTEAY M(50)PHVTEAY 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2162475585938 2 482.21566 962.416767 0.63657 0.00030696 0.11173 5.3877E-05 0.7483 0.00036084 482.21579334288435 26.698 0.2825 23.747 23.619 23.901 -2.9511 23 14 2 0 0 0 0.35156 1 14751 14751 49.669 6.7009 1 7420300 40520 9027 27073 27643 47512 47512 1516 -0.06594427142306358 MPHVTEAY 8 Oxidation (M) _M(Oxidation (M))PHVTEAY_ M(1)PHVTEAY M(47)PHVTEAY 0 0 1 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS AL20221201_MKP_PDAC_01 4 481.7711486816406 2 482.21566 962.416767 NaN NaN NaN NaN NaN NaN NaN 27.261 1 24.224 23.724 24.724 -3.0365 0 0 0 0.44807 1 15092 15092 46.921 12.734 1 40521 9027 27073 27643 47513 47513 1516 -0.06594427142306358 MPIFKLVSTMF 11 Unmodified _MPIFKLVSTMF_ 0 0 0 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 656.8527221679688 2 657.353445 1312.69234 1.1676 0.00076751 -0.77171 -0.00050729 0.39586 0.00026022 657.3532410469486 59.051 0.36184 52.977 52.719 53.081 -6.0745 43 19 3 0 0 0 0.29564 1 37775 37775 5.7319 3.8876 1 58746000 + 40522 17158 27074 27644 47514 47514 0.048498886613515424 MPIGAKRAP 9 Unmodified _MPIGAKRAP_ 0 0 0 ENSG00000174640|ENST00000310926|SLCO2A1 ENSG00000174640|ENST00000310926|SLCO2A1 ENSG00000174640|ENST00000310926|SLCO2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2742004394531 2 470.77348 939.532406 0.21666 0.000102 -2.1666 -0.00102 -1.95 -0.00091799 470.7722088490113 71.933 0.27771 71.933 71.796 72.074 0 20 12 2 0 0 0 0.58865 1 40063 40063 2.0598 0 1 1120600 40523 8444 27075 27645 47515 47515 0.06022141499192912 MPIGAKRAP 9 Unmodified _MPIGAKRAP_ 0 0 0 ENSG00000174640|ENST00000310926|SLCO2A1 ENSG00000174640|ENST00000310926|SLCO2A1 ENSG00000174640|ENST00000310926|SLCO2A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.77348 939.532406 0.49278 0.00023199 -1.7856 -0.00084061 -1.2928 -0.00060862 470.7725819812458 71.774 0.4353 71.813 71.599 72.035 0.039024 -0.060083 8.8814E-05 NaN 2.0598 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4806200 40524 8444 27075 27645 0.06022141499192912 MPIGPDVSL 9 Oxidation (M) _M(Oxidation (M))PIGPDVSL_ M(1)PIGPDVSL M(74)PIGPDVSL 0 0 1 ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7415161132812 2 472.741511 943.468469 0.42652 0.00020163 -0.47466 -0.00022439 -0.048142 -2.2759E-05 472.74139849332965 58.167 0.6655 58.167 57.869 58.535 0 79 26 4 0 0 0 0.012158 3 32387 32282;32387;32492 74.396 29.989 1 11111000 40525 8136 27076 27646 47516;47517;47518 47517 1378 -0.00552683448404423 MPIGPDVSL 9 Oxidation (M) _M(Oxidation (M))PIGPDVSL_ M(1)PIGPDVSL M(57)PIGPDVSL 0 0 1 ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 944.4751586914062 1 944.475745 943.468469 -0.085941 -8.117E-05 0.6122 0.00057821 0.52626 0.00049704 944.4759632321037 58.067 0.44529 58.067 57.968 58.414 0 31 17 2 0 0 0 0.026094 1 32448 32448 57.471 34.323 1 1369300 40526 8136 27076 27646 47519 47519 1378 -0.00552683448404423 MPIGPDVSL 9 Unmodified _MPIGPDVSL_ 0 0 0 ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7441711425781 2 464.744053 927.473554 0.63932 0.00029712 -1.2068 -0.00056087 -0.56752 -0.00026375 464.74354075303125 69.439 0.27402 69.439 69.304 69.578 0 16 11 2 0 0 0 0.30562 1 38659 38659 16.942 4.4107 1 717400 40527 8136 27076 27647 47520 47520 0.00691620414204408 MPIGPDVSL 9 Unmodified _MPIGPDVSL_ 0 0 0 ENSG00000171763|ENST00000305560|SPATA5L1;ENST00000533841.1_1_15:45709932-45713405:+|nuORF ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7429809570312 2 464.744053 927.473554 NaN NaN NaN NaN NaN NaN NaN 69.927 1 69.448 68.948 69.948 -0.47903 0 0 0 0.33856 1 38232 38232 23.148 2.2772 1 40528 8136 27076 27647 47521 47521 0.00691620414204408 MPIHELLSLY 10 Oxidation (M) _M(Oxidation (M))PIHELLSLY_ M(1)PIHELLSLY M(67)PIHELLSLY 0 0 1 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3233032226562 2 616.323199 1230.63185 0.30572 0.00018843 0.41448 0.00025546 0.72021 0.00044388 616.3230602039268 70.415 0.29128 69.936 69.716 70.007 -0.47903 31 16 3 0 0 0 0.031389 1 38509 38509 67.344 49.198 1 2929000 40529 10055 27077 27648 47522 47522 1631 0.025754946026609105 MPIHELLSLY 10 Oxidation (M) _M(Oxidation (M))PIHELLSLY_ M(1)PIHELLSLY M(48)PIHELLSLY 0 0 1 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3243408203125 2 616.323199 1230.63185 0.5243 0.00032314 -0.10159 -6.2609E-05 0.42272 0.00026053 616.3233361810302 69.764 0.36325 69.795 69.592 69.955 0.030914 32 18 2 0 0 0 0.092434 1 38360 38360 48.346 27.931 1 6882200 40530 10055 27077 27648 47523 47523 1631 0.025754946026609105 MPIHELLSLY 10 Unmodified _MPIHELLSLY_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3272705078125 2 608.325742 1214.63693 1.0017 0.00060935 1.343 0.00081701 2.3447 0.0014264 608.3268193010753 97.877 0.21761 91.701 91.614 91.831 -6.1757 36 13 4 0 0 0 0.33553 1 64882 64882 25.399 0.72543 1 60798000 40531 10055 27077 27649 47524 47524 0.038197984652697414 MPIIPIYWEP 10 Unmodified _MPIIPIYWEP_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8307495117188 2 629.83066 1257.64677 0.74424 0.00046874 -1.0996 -0.00069256 -0.35535 -0.00022381 629.8295548810511 52.674 0.25329 46.94 46.707 46.96 -5.7345 19 13 2 0 0 0 0.19662 1 33254 33254 34.102 12.565 1 22594000 + 40532 17601;19809 27078 27650 47525 47525 0.028249864706140215 MPIITPAY 8 Unmodified _MPIITPAY_ 0 0 0 nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61002191-61018944:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF;ENSG00000218823|ENST00000404991|PAPOLB;ENSG00000090060|ENST00000216277|PAPOLA nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000090060|ENST00000216277|PAPOLA nc|ENSG00000115421|Q9BWT3-2|PAPOLG MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.244384765625 2 453.243689 904.472826 1.1443 0.00051864 1.3049 0.00059143 2.4492 0.0011101 453.2437170394299 72.016 0.22499 65.841 65.694 65.919 -6.1757 21 12 2 0 0 0 0.18701 1 47086 47086 75.128 26.782 1 18371000 40533 3123;1547 27079 27651 47526 47526 0.016768257651619933 MPIKLKIGL 9 Oxidation (M) _M(Oxidation (M))PIKLKIGL_ M(1)PIKLKIGL M(71)PIKLKIGL 0 0 1 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.8305053710938 2 514.830463 1027.64637 0.66167 0.00034065 -0.51168 -0.00026343 0.15 7.7223E-05 514.830184809886 52.824 0.33545 52.761 52.645 52.981 -0.063423 35 16 3 0 0 0 0.013323 1 28617 28617 71.134 44.25 1 2905800 40534 5180 27080 27652 47527 47527 952 0.1336561154141691 MPIKLKIGL 9 Unmodified _MPIKLKIGL_ 0 0 0 nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000139697|A3KN83-3|SBNO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.83349609375 2 506.833006 1011.65146 1.1221 0.00056874 0.84422 0.00042788 1.9664 0.00099662 506.83318717523133 89.181 0.386 83.005 82.796 83.182 -6.1757 32 21 2 0 0 0 0.042911 1 58797 58797 48.346 21.462 1 10692000 40535 5180 27080 27653 47528 47528 0.1460991540404848 MPILVEKFPF 10 Oxidation (M) _M(Oxidation (M))PILVEKFPF_ M(1)PILVEKFPF M(44)PILVEKFPF 0 0 1 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000085721|Q9NYV6-4|RRN3;ENST00000561685.1_1_16:15168568-15177423:-|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8395385742188 2 618.838485 1235.66242 0.36939 0.00022859 -1.8401 -0.0011387 -1.4707 -0.00091012 618.8379715393183 79.861 0.29698 79.918 79.797 80.094 0.057587 20 11 3 0 0 0 0.11824 1 44149 44149 43.772 25.626 1 3647600 40536 1414 27081 27654 47529 47529 235 0.054012729876831145 MPIPEGLTL 9 Unmodified _MPIPEGLTL_ 0 0 0 ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7677612304688 2 485.767529 969.520504 1.0059 0.00048862 2.0736 0.0010073 3.0795 0.0014959 485.7677474635275 91.567 0.48473 85.392 85.111 85.596 -6.1757 32 26 2 0 0 0 0.087258 2 60392 60392;60565 36.044 5.8194 1 5212400 40537 3088 27082 27655 47530;47531 47530 0.03452479965346811 MPIQEERFVTY 11 Oxidation (M) _M(Oxidation (M))PIQEERFVTY_ M(1)PIQEERFVTY M(92)PIQEERFVTY 0 0 1 ENST00000474944.5_1_8:94767142-94822123:+|nuORF;ENSG00000164953|ENST00000453321|TMEM67 ENST00000474944.5_1_8:94767142-94822123:+|nuORF ENST00000474944.5_1_8:94767142-94822123:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.8460693359375 2 714.845027 1427.6755 0.37785 0.00027011 0.47829 0.00034191 0.85615 0.00061201 714.8455564567637 47.51 0.21845 47.51 47.405 47.623 0 28 9 4 0 0 0 0.00017946 1 26010 26010 92.201 79.159 1 4604200 40538 7272 27083 27656 47532 47532 1260 -0.02122940690901487 MPIQSHVI 8 Unmodified _MPIQSHVI_ 0 0 0 ENST00000546661.1_1_12:53910923-53918651:-|nuORF;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7 ENST00000546661.1_1_12:53910923-53918651:-|nuORF ENST00000546661.1_1_12:53910923-53918651:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7526245117188 2 462.752213 923.489873 0.80123 0.00037077 1.1683 0.00054062 1.9695 0.00091139 462.75253230831896 45.73 0.19578 40.775 40.698 40.894 -4.9549 18 12 2 0 0 0 0.23628 1 28165 28165 64.236 6.765 1 6496400 40539 8012 27084 27657 47533 47533 0.02506746370977453 MPIQVLKGL 9 Oxidation (M) _M(Oxidation (M))PIQVLKGL_ M(1)PIQVLKGL M(78)PIQVLKGL 0 0 1 ENST00000345523.8_1_19:51302584-51305485:-|nuORF ENST00000345523.8_1_19:51302584-51305485:-|nuORF ENST00000345523.8_1_19:51302584-51305485:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8040771484375 2 507.804445 1013.59434 -0.042262 -2.1461E-05 -0.2513 -0.00012761 -0.29356 -0.00014907 507.80486106830244 58.701 0.36584 58.21 57.982 58.348 -0.49079 28 17 3 0 0 0 0.010818 1 31925 31925 78.149 20.678 1 3521300 40540 12026 27085 27658 47534 47534 1749 0.08808448127695101 MPIQVLKGL 9 Oxidation (M) _M(Oxidation (M))PIQVLKGL_ M(1)PIQVLKGL M(78)PIQVLKGL 0 0 1 ENST00000345523.8_1_19:51302584-51305485:-|nuORF ENST00000345523.8_1_19:51302584-51305485:-|nuORF ENST00000345523.8_1_19:51302584-51305485:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.8041076660156 2 507.804445 1013.59434 0.87007 0.00044183 0.009911 5.0329E-06 0.87999 0.00044686 507.80484626962095 58.311 0.31684 58.251 58.097 58.414 -0.060722 41 15 3 0 0 0 0.010818 1 31717 31717 78.149 20.678 1 5627800 40541 12026 27085 27658 47535 47535 1749 0.08808448127695101 MPIREGDTVTL 11 Oxidation (M) _M(Oxidation (M))PIREGDTVTL_ M(1)PIREGDTVTL M(51)PIREGDTVTL 0 0 1 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22;ENST00000600655.1_1_19:35831797-35832055:+|nuORF nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.31787109375 2 624.318645 1246.62274 0.2846 0.00017768 -0.92945 -0.00058027 -0.64485 -0.00040259 624.318421396123 39.647 0.32354 39.647 39.488 39.812 0 39 15 3 0 0 0 0.047268 1 21235 21235 51.488 20.22 1 6623300 40542 456 27086 27659 47536 47536 61 0.009291012463108927 MPIREGDTVTL 11 Oxidation (M) _M(Oxidation (M))PIREGDTVTL_ M(1)PIREGDTVTL M(42)PIREGDTVTL 0 0 1 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22;ENST00000600655.1_1_19:35831797-35832055:+|nuORF nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.31884765625 2 624.318645 1246.62274 0.31464 0.00019644 0.058295 3.6394E-05 0.37293 0.00023283 624.3191069495983 44.976 0.24204 40.124 40.007 40.249 -4.852 20 15 2 0 0 0 0.10142 1 27522 27522 42.312 11.044 1 8590400 40543 456 27086 27659 47537 47537 61 0.009291012463108927 MPIREGDTVTL 11 Unmodified _MPIREGDTVTL_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22;ENST00000600655.1_1_19:35831797-35832055:+|nuORF nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3226318359375 2 616.321188 1230.62782 1.0861 0.00066938 0.81577 0.00050277 1.9019 0.0011722 616.3218743170405 53.834 0.31081 48.029 47.849 48.16 -5.8042 36 19 2 0 0 0 0.02135 1 34020 34020 57.108 17.15 1 18619000 40544 456 27086 27660 47538 47538 0.021734051089197237 MPIRHGWSFK 10 Unmodified _MPIRHGWSFK_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8314208984375 2 629.829317 1257.64408 0.82746 0.00052116 1.5376 0.00096845 2.3651 0.0014896 629.8298222683796 46.227 0.22669 46.194 46.081 46.307 -0.033417 14 10 2 0 0 0 0.46514 1 24884 24884 18.146 2.2992 1 3118100 + 40545 21218 27087 27661 47539 47539 0.02556575856328891 MPIRHGWSFK 10 Unmodified _MPIRHGWSFK_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 629.829317 1257.64408 0.82746 0.00052116 1.5376 0.00096845 2.3651 0.0014896 629.8298222683796 46.227 0.22669 46.194 46.081 46.307 -0.033417 0 0 NaN 18.146 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3118100 + 40546 21218 27087 27661 0.02556575856328891 MPIRSLTF 8 Oxidation (M) _M(Oxidation (M))PIRSLTF_ M(1)PIRSLTF M(54)PIRSLTF 0 0 1 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7657470703125 2 490.76532 979.516088 0.85409 0.00041916 -0.058575 -2.8747E-05 0.79552 0.00039041 490.76518627075643 49.366 0.42828 49.322 49.027 49.456 -0.04369 48 20 3 0 0 0 0.31379 2 26586 26586;26685 53.833 25.346 1 5749900 40547 5229 27088 27662 47540;47541 47540 962 0.02551015542451296 MPIRSLTF 8 Unmodified _MPIRSLTF_ 0 0 0 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7669982910156 2 482.767863 963.521173 1.4789 0.00071395 -0.57818 -0.00027912 0.90069 0.00043482 482.7671780848178 64.47 0.31747 58.294 58.132 58.45 -6.1757 30 17 2 0 0 0 0.33377 1 41769 41769 51.63 21.405 1 16124000 40548 5229 27088 27663 47542 47542 0.03795319405060127 MPISSHVDL 9 Oxidation (M) _M(Oxidation (M))PISSHVDL_ M(1)PISSHVDL M(100)PISSHVDL 0 0 1 ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7503967285156 2 507.749867 1013.48518 0.3981 0.00020214 0.59261 0.0003009 0.99071 0.00050303 507.7501888430509 37.992 0.34174 37.992 37.806 38.148 0 64 16 5 0 0 0 0.0088975 2 20207 20207;20313 104.8 53.944 1 18147000 40549 8136 27089 27664 47543;47544 47543 1379 -0.021021825624416124 MPISSHVDL 9 Unmodified _MPISSHVDL_ 0 0 0 ENSG00000171763|ENST00000305560|SPATA5L1;nc|ENSG00000171763|Q9BVQ7-2|AFG2B ENSG00000171763|ENST00000305560|SPATA5L1 ENSG00000171763|ENST00000305560|SPATA5L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7513732910156 2 499.75241 997.490267 0.70708 0.00035337 0.010806 5.4003E-06 0.71789 0.00035877 499.75260041318205 53.25 0.34057 47.446 47.301 47.642 -5.8042 45 21 3 0 0 0 0.0090851 2 33603 33603;33730 85.357 34.502 1 43618000 40550 8136 27089 27665 47545;47546 47545 -0.008578786998327814 MPITEVFKEEM 11 2 Oxidation (M) _M(Oxidation (M))PITEVFKEEM(Oxidation (M))_ M(1)PITEVFKEEM(1) M(150)PITEVFKEEM(150) 0 0 2 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3202514648438 2 693.319996 1384.62544 0.05768 3.9991E-05 0.15288 0.000106 0.21056 0.00014599 693.3202229369408 46.775 0.60997 46.775 46.412 47.022 0 72 28 3 0 0 0 5.665699999999999E-21 2 25578 25469;25578 150.62 114.22 1 8526300 40551 4331 27090 27666 47547;47548 47548 780;781 -0.05148811411049792 MPITEVFKEEM 11 Oxidation (M) _MPITEVFKEEM(Oxidation (M))_ MPITEVFKEEM(1) M(-90)PITEVFKEEM(90) 0 0 1 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20221201_MKP_PDAC_01 4 685.322509765625 2 685.322539 1368.63052 NaN NaN NaN NaN NaN NaN NaN 63.337 1 57.161 56.661 57.661 -6.1757 0 0 0 6.841E-07 1 40934 40934 91.085 59.047 2 40552 4331 27090 27667 47549 47549 780;781 -0.03904507548440961 MPITEVFKEEM 11 Unmodified _MPITEVFKEEM_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20221201_MKP_PDAC_01 4 677.3248291015625 2 677.325082 1352.63561 NaN NaN NaN NaN NaN NaN NaN 83.329 1 77.153 76.653 77.653 -6.1757 0 0 0 0.06533 1 54794 54794 68.76 38.919 1 40553 4331 27090 27668 47550 47550 -0.026602036858093925 MPITEVFKEEM 11 Unmodified _MPITEVFKEEM_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20221201_MKP_PDAC_01 4 677.3250122070312 2 677.325082 1352.63561 NaN NaN NaN NaN NaN NaN NaN 83.959 1 77.783 77.283 78.283 -6.1757 0 0 0 0.014399 1 55218 55218 87.123 50.617 1 40554 4331 27090 27668 47551 47551 -0.026602036858093925 MPIVLELIP 9 Oxidation (M) _M(Oxidation (M))PIVLELIP_ M(1)PIVLELIP M(40)PIVLELIP 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.8074951171875 2 520.806654 1039.59875 0.24944 0.00012991 0.9925 0.0005169 1.2419 0.00064681 520.8071566554406 99.632 0.22615 99.474 99.328 99.554 -0.15751 21 7 4 0 0 0 0.068777 1 54366 54366 40.449 22.314 1 5015800 40555 10128 27091 27669 47552 47552 1647 0.0805391255057657 MPIVLELIP 9 Oxidation (M) _M(Oxidation (M))PIVLELIP_ 0 0 1 ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.806654 1039.59875 0.38971 0.00020296 0.72824 0.00037927 1.1179 0.00058224 520.8069219046412 99.494 0.17806 99.494 99.385 99.563 0 6.4461E-05 0.00029456 NaN 40.449 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 567320 40556 10128 27091 27669 1647 0.0805391255057657 MPIVLELIP 9 Unmodified _MPIVLELIP_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8087768554688 2 512.809196 1023.60384 0.57217 0.00029342 -0.78688 -0.00040352 -0.2147 -0.0001101 512.808984500834 101.9 0.11724 95.725 95.662 95.78 -6.1757 17 5 4 0 0 0 0.10925 1 68397 68397 32.117 15.175 1 74454000 40557 10128 27091 27670 47553 47553 0.09298216413208138 MPIVLELIPL 10 Unmodified _MPIVLELIPL_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2;ENST00000427426.1_1_1:568752-568815:+|nuORF ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.352783203125 2 569.351228 1136.6879 1.3329 0.00075887 -0.22756 -0.00012956 1.1053 0.00062931 569.3512684926152 102.62 0.094711 96.44 96.386 96.481 -6.1757 50 18 4 0 0 0 0.42068 1 68852 68852 20.454 3.3407 1 36203000 40558 10128 27092 27671 47554 47554 0.1250274751012057 MPIYEAADKAL 11 Oxidation (M) _M(Oxidation (M))PIYEAADKAL_ M(1)PIYEAADKAL M(120)PIYEAADKAL 0 0 1 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.3109130859375 2 619.310289 1236.60602 0.3106 0.00019236 0.042374 2.6243E-05 0.35297 0.0002186 619.310517522405 45.556 0.30787 45.556 45.46 45.768 0 42 15 3 0 0 0 3.8575E-11 2 24933 24818;24933 124.95 86.777 1 10465000 40559 4011 27093 27672 47555;47556 47556 714 -0.0028139963965259085 MPIYEAADKAL 11 Unmodified _MPIYEAADKAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.3155517578125 2 611.312832 1220.61111 1.0065 0.0006153 1.7444 0.0010664 2.751 0.0016817 611.3139547351143 60.543 0.43316 54.395 54.161 54.594 -6.1478 40 22 2 0 0 0 1.1867E-08 2 38915 38915;39041 108.26 44.026 1 33550000 40560 4011 27093 27673 47557;47558 47557 0.009629042229562401 MPKAEYSSL 9 Unmodified _MPKAEYSSL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2512817382812 2 513.252243 1024.48993 -0.20622 -0.00010585 -0.89374 -0.00045871 -1.1 -0.00056456 513.2519225951838 35.303 0.21353 35.303 35.146 35.36 0 15 10 2 0 0 0 0.040683 1 18648 18648 49.554 20.473 1 4290800 40561 4951 27094 27674 47559 47559 -0.021332984196760663 MPKAEYSSL 9 Unmodified _MPKAEYSSL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2520141601562 2 513.252243 1024.48993 0.12557 6.4447E-05 1.0047 0.00051567 1.1303 0.00058012 513.2526072678254 39.984 0.34489 35.455 35.275 35.62 -4.5294 40 28 2 0 0 0 0.036857 2 23719 23719;23848 51.63 17.228 1 53945000 40562 4951 27094 27674 47560;47561 47560 -0.021332984196760663 MPKEPEDTY 9 Unmodified _MPKEPEDTY_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7757568359375 2 555.244615 1108.47468 1.1253 0.00062484 0.69129 0.00038384 1.8166 0.0010087 555.243977742402 50.772 0.3894 45.123 44.907 45.297 -5.649 45 23 3 0 0 0 0.20528 1 31792 31792 8.5933 2.8329 1 36767000 40563 7178 27095 27675 47562 47562 -0.07522210007527974 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(52)PKFSM(52)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.242919921875 2 537.243363 1072.47217 -0.30115 -0.00016179 -0.6849 -0.00036796 -0.98605 -0.00052975 537.2433458888212 42.023 0.26221 41.716 41.535 41.798 -0.30682 38 12 4 0 0 0 0.03568 1 22263 22263 52.268 40.628 1 38519000 40564 3826 27096 27676 47563 47563 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(56)PKFSM(56)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2422485351562 2 537.243363 1072.47217 -0.09787 -5.258E-05 -0.52778 -0.00028355 -0.62565 -0.00033613 537.243112431668 42.356 0.2233 42.049 41.92 42.143 -0.30682 18 10 2 0 0 0 0.028475 1 22472 22472 56.177 21.99 1 42804000 40565 3826 27096 27676 47564 47564 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(52)PKFSM(52)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.244384765625 2 537.243363 1072.47217 -0.011227 -6.0318E-06 -0.82404 -0.00044271 -0.83527 -0.00044874 537.2432740555286 42.577 0.23956 42.27 42.143 42.383 -0.30682 32 11 4 0 0 0 0.036857 1 22584 22584 51.63 32.191 1 40456000 40566 3826 27096 27676 47565 47565 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(42)PKFSM(42)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2432250976562 2 537.243363 1072.47217 0.04695 2.5224E-05 -0.042802 -2.2995E-05 0.0041482 2.2286E-06 537.2435894011137 42.966 0.27422 42.655 42.524 42.799 -0.31039 40 12 4 0 0 0 0.06294 1 22810 22810 41.84 25.992 1 43380000 40567 3826 27096 27676 47566 47566 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(52)PKFSM(52)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2432250976562 2 537.243363 1072.47217 -0.26156 -0.00014052 -0.55408 -0.00029768 -0.81565 -0.0004382 537.2432147526802 41.723 0.28897 41.721 41.573 41.862 -0.0017929 46 13 4 0 0 0 0.03568 1 22307 22307 52.268 35.326 1 58311000 40568 3826 27096 27676 47567 47567 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(52)PKFSM(52)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2425537109375 2 537.243363 1072.47217 0.024017 1.2903E-05 -0.67314 -0.00036164 -0.64913 -0.00034874 537.2432247287437 42.076 0.27171 42.068 41.915 42.187 -0.0088196 37 12 4 0 0 0 0.03568 1 22488 22488 52.268 37.43 1 71912000 40569 3826 27096 27676 47568 47568 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(56)PKFSM(56)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.243896484375 2 537.243363 1072.47217 0.20441 0.00010982 -0.5751 -0.00030897 -0.37069 -0.00019915 537.2433538001677 42.326 0.25657 42.317 42.164 42.421 -0.0088196 39 11 4 0 0 0 0.028475 2 22597 22597;22701 56.177 42.921 1 53666000 40570 3826 27096 27676 47569;47570 47569 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ M(1)PKFSM(1)PGF M(56)PKFSM(56)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2429809570312 2 537.243363 1072.47217 0.49592 0.00026643 -0.78304 -0.00042068 -0.28712 -0.00015425 537.2432900369696 42.655 0.31881 42.646 42.467 42.786 -0.0088196 47 14 5 0 0 0 0.028475 2 22806 22806;22907 56.177 39.235 1 84257000 40571 3826 27096 27676 47571;47572 47571 678;679 -0.06116336946183765 MPKFSMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKFSM(Oxidation (M))PGF_ 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 537.243363 1072.47217 0.45001 0.00024177 -0.97514 -0.00052389 -0.52513 -0.00028212 537.242618209831 46.809 0.31358 41.729 41.632 41.946 -5.0805 0.0068639 -0.00025352 NaN 52.268 71 46 2 NaN NaN NaN NaN 0 NaN NaN 0 28027000 40572 3826 27096 27676 678;679 -0.06116336946183765 MPKFSMPGF 9 Oxidation (M) _MPKFSM(Oxidation (M))PGF_ MPKFSM(1)PGF M(-34)PKFSM(34)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.245849609375 2 529.245906 1056.47726 -0.16834 -8.9094E-05 -0.70284 -0.00037197 -0.87118 -0.00046107 529.2458188956496 51.518 0.45018 51.464 51.147 51.597 -0.053871 68 22 4 0 0 0 0.028475 1 27849 27849 56.177 35.723 2 21791000 40573 3826 27096 27677 47573 47573 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _MPKFSM(Oxidation (M))PGF_ M(0.003)PKFSM(0.997)PGF M(-26)PKFSM(26)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2469482421875 2 529.245906 1056.47726 0.30705 0.00016251 0.23832 0.00012613 0.54538 0.00028864 529.2463269450682 51.987 0.33588 51.928 51.731 52.067 -0.058918 45 15 4 0 0 0 0.044011 1 28101 28101 47.749 29.614 2 22955000 40574 3826 27096 27677 47574 47574 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _M(Oxidation (M))PKFSMPGF_ M(0.997)PKFSM(0.003)PGF M(25)PKFSM(-25)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2461547851562 2 529.245906 1056.47726 0.28139 0.00014892 -0.82984 -0.00043919 -0.54845 -0.00029027 529.2457427607048 62.163 0.35098 62.131 61.888 62.239 -0.032787 63 17 5 0 0 0 0.05447 1 33904 33904 43.858 25.723 2 54146000 40575 3826 27096 27677 47575 47575 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _M(Oxidation (M))PKFSMPGF_ M(1)PKFSMPGF M(33)PKFSM(-33)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2453002929688 2 529.245906 1056.47726 0.29367 0.00015542 -1.1551 -0.00061135 -0.86146 -0.00045593 529.2456066954907 62.486 0.39441 62.465 62.284 62.678 -0.021614 55 20 4 0 0 0 0.03568 1 34122 34122 52.268 31.815 2 33025000 40576 3826 27096 27677 47576 47576 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _MPKFSM(Oxidation (M))PGF_ M(0.002)PKFSM(0.998)PGF M(-26)PKFSM(26)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2465209960938 2 529.245906 1056.47726 0.96129 0.00050876 -1.0843 -0.00057384 -0.12296 -6.5078E-05 529.2456399521011 57.282 0.41201 51.254 51.049 51.461 -6.0275 66 22 4 0 0 0 0.036857 1 36655 36655 51.63 29.883 2 140390000 40577 3826 27096 27677 47577 47577 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _MPKFSM(Oxidation (M))PGF_ M(0.008)PKFSM(0.992)PGF M(-21)PKFSM(21)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.24609375 2 529.245906 1056.47726 0.68947 0.0003649 -0.57463 -0.00030412 0.11485 6.0783E-05 529.2457900610528 57.752 0.58864 51.725 51.552 52.14 -6.0275 77 32 4 0 0 0 0.036857 1 36921 36921 51.63 28.481 2 122130000 40578 3826 27096 27677 47578 47578 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _M(Oxidation (M))PKFSMPGF_ M(0.997)PKFSM(0.003)PGF M(25)PKFSM(-25)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2461547851562 2 529.245906 1056.47726 0.64942 0.0003437 0.049119 2.5996E-05 0.69854 0.0003697 529.2462489960326 67.821 1.2993 61.645 61.272 62.572 -6.1757 175 76 4 0 0 0 0.05447 2 44241 44241;44649 43.858 25.723 2 81943000 40579 3826 27096 27677 47579;47580 47579 678;679 -0.04872033083574934 MPKFSMPGF 9 Oxidation (M) _M(Oxidation (M))PKFSMPGF_ M(1)PKFSMPGF M(44)PKFSM(-44)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2467651367188 2 529.245906 1056.47726 0.90037 0.00047652 1.3235 0.00070046 2.2239 0.001177 529.2466136898663 69.259 0.92296 63.084 62.762 63.685 -6.1757 70 50 3 0 0 0 0.017075 1 45046 45046 66.457 40.115 2 27411000 40580 3826 27096 27677 47581 47581 678;679 -0.04872033083574934 MPKFSMPGF 9 Unmodified _MPKFSMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.249267578125 2 521.248449 1040.48234 0.67757 0.00035318 -0.262 -0.00013657 0.41558 0.00021662 521.2486364523436 71.603 0.38191 71.642 71.427 71.809 0.039024 62 17 5 0 0 0 0.014417 1 39405 39405 69.105 52.163 1 20002000 40581 3826 27096 27678 47582 47582 -0.03627729220966103 MPKFSMPGF 9 Unmodified _MPKFSMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.249267578125 2 521.248449 1040.48234 1.2791 0.00066671 -0.76565 -0.00039909 0.51341 0.00026762 521.2484464081995 86.642 1.7521 80.466 79.378 81.13 -6.1757 337 96 5 0 0 0 0.010611 8 57080 56567;56705;56833;56959;57080;57197;57315;57435 78.728 56.981 1 251020000 40582 3826 27096 27678 47583;47584;47585;47586;47587;47588;47589;47590 47587 -0.03627729220966103 MPKGTEFGIDY 11 Unmodified _MPKGTEFGIDY_ 0 0 0 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.2955932617188 2 629.294639 1256.57472 0.83217 0.00052368 0.45829 0.0002884 1.2905 0.00081209 629.294415271153 60.362 0.22994 54.248 54.194 54.424 -6.1147 19 11 2 0 0 0 0.0091632 1 38910 38910 68.76 37.492 1 14398000 40583 4291 27097 27679 47591 47591 -0.04329972673735938 MPKISMPGF 9 2 Oxidation (M) _M(Oxidation (M))PKISM(Oxidation (M))PGF_ M(1)PKISM(1)PGF M(44)PKISM(44)PGF 0 0 2 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.25146484375 2 520.251188 1038.48782 -0.076272 -3.9681E-05 -0.19246 -0.00010013 -0.26873 -0.00013981 520.2514092466342 37.782 0.24943 37.799 37.673 37.922 0.01704 31 11 4 0 0 0 0.05447 1 20067 20067 43.858 22.112 1 5234200 40584 3826 27098 27680 47592 47592 680;681 -0.029880504291440957 MPKISMPGF 9 Unmodified _MPKISMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2569274902344 2 504.256274 1006.49799 0.40947 0.00020648 3.453 0.0017412 3.8624 0.0019477 504.258269257094 67.863 0.22861 67.881 67.748 67.976 0.018028 17 10 2 0 0 0 0.08691 1 37287 37287 36.127 21.545 1 1888300 40585 3826 27098 27681 47593 47593 -0.004994427039036964 MPKISMPGF 9 Unmodified _MPKISMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2563781738281 2 504.256274 1006.49799 0.82213 0.00041457 0.90829 0.00045801 1.7304 0.00087258 504.2564923734963 78.879 1.0788 72.703 72.422 73.5 -6.1757 79 62 2 0 0 0 0.15471 1 51597 51597 27.629 2.9549 1 17316000 40586 3826 27098 27681 47594 47594 -0.004994427039036964 MPKISMPGF 9 Unmodified _MPKISMPGF_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.256274 1006.49799 0.71653 0.00036131 3.3376 0.001683 4.0541 0.0020443 504.25740719452045 72.872 0.14284 72.872 72.762 72.905 0 0.084477 0.0023407 NaN 27.629 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 516810 40587 3826 27098 27681 -0.004994427039036964 MPKISMPGF 9 Oxidation (M) _MPKISM(Oxidation (M))PGF_ M(0.001)PKISM(0.999)PGF M(-32)PKISM(32)PGF 0 0 1 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS AL20221201_MKP_PDAC_01 4 512.2537231445312 2 512.253731 1022.49291 NaN NaN NaN NaN NaN NaN NaN 53.518 1 47.713 47.213 48.213 -5.8042 0 0 0 0.083082 1 33835 33835 47.749 31.902 2 40588 3826 27098 27682 47595 47595 680;681 -0.01743746566523896 MPKKNRIAI 9 Unmodified _MPKKNRIAI_ 0 0 0 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5556030273438 3 357.55495 1069.64302 1.738 0.00062144 -0.74039 -0.00026473 0.99763 0.00035671 357.5548758158079 21.84 0.52675 19.106 18.827 19.354 -2.7348 115 29 6 0 0 0 0.34134 2 11675 11675;11779 15.248 8.1468 1 45003000 40589 117 27099 27683 47596;47597 47596 0.11098361487438524 MPKKRQALV 9 Unmodified _MPKKRQALV_ 0 0 0 ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF ENSG00000104824|ENST00000221419|HNRNPL ENSG00000104824|ENST00000221419|HNRNPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8284912109375 2 535.828786 1069.64302 0.97573 0.00052282 0.81089 0.0004345 1.7866 0.00095732 535.8291793930416 21.834 0.28396 19.099 18.935 19.219 -2.7348 19 15 2 0 0 0 0.34134 1 11763 11763 15.847 0 1 1967500 40590 2240 27100 27684 47598 47598 0.11098361487438524 MPKKSSVVL 9 Unmodified _MPKKSSVVL_ 0 0 0 nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP nc|ENSG00000113441|Q9UIQ6-3|LNPEP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.8140258789062 2 494.79662 987.578688 0.7057 0.00034918 -1.8388 -0.00090985 -1.1331 -0.00056068 494.79573544543723 28.453 0.17116 25.305 25.23 25.401 -3.1482 12 8 2 0 0 0 0.14565 1 15847 15847 31.268 10.397 1 5146800 40591 2967 27101 27685 47599 47599 0.08440161610644736 MPKLAQCK 8 Unmodified _MPKLAQCK_ 0 0 0 REV__ENSG00000103241|ENST00000262426|FOXF1 REV__ENSG00000103241|ENST00000262426|FOXF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7467651367188 2 459.748616 917.482679 -0.098865 -4.5453E-05 -0.94284 -0.00043347 -1.0417 -0.00047892 459.7472126792193 38.098 0.26926 37.826 37.699 37.969 -0.27133 15 12 2 0 0 0 0.65867 1 20070 20070 20.871 2.7362 1 1059900 + 40592 18294 27102 27686 47600 47600 0.020636904988919014 MPKLRVLEL 9 Unmodified _MPKLRVLEL_ 0 0 0 nc|ENSG00000127452|Q9NXK8-2|FBXL12;ENSG00000127452|ENST00000247977|FBXL12 nc|ENSG00000127452|Q9NXK8-2|FBXL12 nc|ENSG00000127452|Q9NXK8-2|FBXL12 MSMS AL20221201_MKP_PDAC_01 4 366.8961791992188 3 366.894972 1097.66309 NaN NaN NaN NaN NaN NaN NaN 93.345 1 87.169 86.669 87.669 -6.1757 0 0 0 0.43047 1 61779 61779 18.373 3.1246 1 40593 4009 27103 27687 47601 47601 0.1181611242739109 MPKMDQDSL 9 Oxidation (M) _MPKM(Oxidation (M))DQDSL_ MPKM(1)DQDSL M(-51)PKM(51)DQDSL 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7388305664062 2 540.738642 1079.46273 0.32437 0.0001754 -0.2771 -0.00014984 0.047269 2.556E-05 540.7387617652861 26.536 0.4827 23.585 23.34 23.823 -2.9511 62 25 3 0 0 0 0.0082475 2 14688 14576;14688 92.653 40.385 2 29241000 40594 1279 27104 27688 47602;47603 47603 216;217 -0.07382150022385758 MPKMDQDSL 9 Oxidation (M) _M(Oxidation (M))PKMDQDSL_ M(0.998)PKM(0.002)DQDSL M(28)PKM(-28)DQDSL 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7393798828125 2 540.738642 1079.46273 0.85638 0.00046308 -2.5566 -0.0013825 -1.7003 -0.0009194 540.7383549071028 30.424 0.31365 26.927 26.757 27.07 -3.497 31 15 4 0 0 0 0.011671 1 17165 17165 75.761 30.061 2 11443000 40595 1279 27104 27688 47604 47604 216;217 -0.07382150022385758 MPKMDQDSL 9 Oxidation (M) _M(Oxidation (M))PKMDQDSL_ 0 0 1 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.738642 1079.46273 -0.42336 -0.00022893 -1.3409 -0.00072506 -1.7642 -0.00095399 540.73781552985 26.855 0.14843 26.855 26.761 26.909 0 -0.036126 0.00076673 NaN 75.761 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 820590 40596 1279 27104 27688 216;217 -0.07382150022385758 MPKMDQDSL 9 Unmodified _MPKMDQDSL_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7423706054688 2 532.741185 1063.46782 1.0672 0.00056852 -0.96598 -0.00051462 0.10118 5.3905E-05 532.741287910576 41.958 0.45784 37.274 37.051 37.508 -4.6846 98 28 5 0 0 0 0.085319 2 25218 25218;25366 36.506 12.196 1 85817000 40597 1279 27104 27689 47605;47606 47605 -0.0613784615975419 MPKSDVNKEYY 11 Unmodified _MPKSDVNKEYY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.5521545410156 3 458.551711 1372.6333 0.102 4.6772E-05 0.053775 2.4659E-05 0.15577 7.143E-05 458.55182736388645 24.04 0.2024 24.04 23.955 24.157 0 28 9 4 0 0 0 0.6013 1 12258 12258 11.271 6.5553 1 3262900 40598 1439 27105 27690 47607 47607 -0.03810916099223505 MPKSDVNKEYY 11 Unmodified _MPKSDVNKEYY_ 0 0 0 nc|ENSG00000086589|Q9NW64-2|RBM22;ENSG00000086589|ENST00000199814|RBM22;ENST00000521594.1_1_5:150076301-150080167:-|nuORF;ENST00000521248.5_1_5:150076301-150080613:-|nuORF;ENST00000522469.5_1_5:150075051-150080604:-|nuORF nc|ENSG00000086589|Q9NW64-2|RBM22 nc|ENSG00000086589|Q9NW64-2|RBM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.5512390136719 3 458.551711 1372.6333 0.53925 0.00024727 0.17201 7.8875E-05 0.71125 0.00032615 458.55187092349433 27.175 0.30684 24.138 23.932 24.239 -3.0365 43 15 4 0 0 0 0.016248 1 14975 14975 61.165 46.946 1 52455000 40599 1439 27105 27690 47608 47608 -0.03810916099223505 MPKVHIEF 8 Oxidation (M) _M(Oxidation (M))PKVHIEF_ M(1)PKVHIEF M(56)PKVHIEF 0 0 1 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7645874023438 2 508.76532 1015.51609 -0.61037 -0.00031054 -0.02188 -1.1132E-05 -0.63225 -0.00032167 508.76540657768686 41.667 0.26085 41.361 41.234 41.495 -0.30682 25 11 3 0 0 0 0.29252 1 22084 22084 56.177 35.306 1 21707000 40600 3152 27106 27691 47609 47609 557 0.00895015542459987 MPKVHIEF 8 Unmodified _MPKVHIEF_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7679443359375 2 500.767863 999.521173 0.41959 0.00021012 -2.4149 -0.0012093 -1.9953 -0.00099917 500.7678640220428 56.202 0.69457 50.225 49.805 50.5 -5.9769 121 40 4 0 0 0 0.19493 1 35934 35934 71.922 45.581 1 98482000 40601 3152 27106 27692 47610 47610 0.02139319405068818 MPLAAVGY 8 Oxidation (M) _M(Oxidation (M))PLAAVGY_ M(1)PLAAVGY M(64)PLAAVGY 0 0 1 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.41845703125 1 837.417502 836.410226 0.19175 0.00016057 0.2476 0.00020735 0.43935 0.00036792 837.4176159279552 45.814 0.25381 45.814 45.664 45.918 0 18 12 2 0 0 0 0.2373 1 24965 24965 64.081 31.627 1 4106500 40602 4029 27107 27693 47611 47611 721 -0.014523203030194054 MPLAAVGY 8 Oxidation (M) _M(Oxidation (M))PLAAVGY_ M(1)PLAAVGY M(52)PLAAVGY 0 0 1 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2121276855469 2 419.212389 836.410226 0.18609 7.8009E-05 -1.1175 -0.00046847 -0.93142 -0.00039046 419.21207209616546 45.798 0.21525 45.798 45.685 45.9 0 16 10 2 0 0 0 0.32738 1 25029 25029 52.334 28.124 1 2230600 40603 4029 27107 27693 47612 47612 721 -0.014523203030194054 MPLAAVGY 8 Oxidation (M) _M(Oxidation (M))PLAAVGY_ M(1)PLAAVGY M(42)PLAAVGY 0 0 1 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4158325195312 1 837.417502 836.410226 0.56129 0.00047004 -0.67658 -0.00056658 -0.11529 -9.6545E-05 837.4169292059187 46.344 0.35183 46.344 46.149 46.501 0 34 16 3 0 0 0 0.42709 1 25264 25264 41.817 11.619 1 5206200 40604 4029 27107 27693 47613 47613 721 -0.014523203030194054 MPLAAVGY 8 Oxidation (M) _M(Oxidation (M))PLAAVGY_ M(1)PLAAVGY M(42)PLAAVGY 0 0 1 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.212890625 2 419.212389 836.410226 0.5899 0.00024729 -0.72603 -0.00030436 -0.13614 -5.7071E-05 419.21213764158756 46.354 0.31657 46.354 46.164 46.481 0 21 14 2 0 0 0 0.42709 1 25320 25320 41.817 19.365 1 2347100 40605 4029 27107 27693 47614 47614 721 -0.014523203030194054 MPLAAVGY 8 Unmodified _MPLAAVGY_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 821.4207763671875 1 821.422587 820.415311 -0.15362 -0.00012619 -0.78848 -0.00064768 -0.9421 -0.00077386 821.4216911874971 58.215 0.24251 57.725 57.598 57.84 -0.48974 15 11 2 0 0 0 0.42709 1 31632 31632 41.817 17.607 1 1088100 40606 4029 27107 27694 47615 47615 -0.0020801644041057443 MPLAAVGY 8 Unmodified _MPLAAVGY_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 821.4228515625 1 821.422587 820.415311 0.44164 0.00036277 -0.78356 -0.00064364 -0.34192 -0.00028086 821.4218645692844 65.699 0.43782 59.523 59.285 59.723 -6.1757 56 25 3 0 0 0 0.12772 2 42712 42576;42712 91.927 50.11 1 35626000 40607 4029 27107 27694 47616;47617 47617 -0.0020801644041057443 MPLAAVGYL 9 Unmodified _MPLAAVGYL_ 0 0 0 ENSG00000127837|ENST00000248450|AAMP;ENST00000494720.5_1_2:219129258-219130297:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF ENSG00000127837|ENST00000248450|AAMP ENSG00000127837|ENST00000248450|AAMP MSMS AL20221201_MKP_PDAC_01 4 468.1924438476562 2 467.756964 933.499375 NaN NaN NaN NaN NaN NaN NaN 89.023 1 82.848 82.348 83.348 -6.1757 0 0 0 0.38239 1 58754 58754 20.871 6.2895 1 40608 4029 27108 27695 47618 47618 0.0299651465649049 MPLADSQAV 9 Oxidation (M) _M(Oxidation (M))PLADSQAV_ M(1)PLADSQAV M(54)PLADSQAV 0 0 1 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2288208007812 2 474.228768 946.442982 0.16216 7.6899E-05 2.8763 0.001364 3.0385 0.0014409 474.22969986209654 31.144 0.40963 31.144 31.031 31.441 0 41 19 3 0 0 0 0.03327 1 16228 16228 53.576 26.692 1 2508000 40609 16412 27109 27696 47619 47619 1819 -0.0323815797082716 MPLADSQAV 9 Unmodified _MPLADSQAV_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2309875488281 2 466.23131 930.448068 1.0001 0.00046629 -0.20795 -9.6954E-05 0.79218 0.00036934 466.23117893930197 50.033 0.46154 44.494 44.299 44.76 -5.5391 50 29 2 0 0 0 0.070838 1 31427 31427 39.957 7.8404 1 32232000 40610 16412 27109 27697 47620 47620 -0.019938541082183292 MPLAECKPLQL 11 Unmodified _MPLAECKPLQL_ 0 0 0 REV__ENSG00000169071|ENST00000375708|ROR2 REV__ENSG00000169071|ENST00000375708|ROR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.832275390625 2 621.832877 1241.6512 0.44862 0.00027896 -0.27916 -0.00017359 0.16946 0.00010538 621.8329684298801 67.57 0.53206 61.394 61.035 61.567 -6.1757 62 29 3 0 0 0 0.18636 2 44018 43887;44018 32.786 5.5625 1 40878000 + 40611 22370 27110 27698 47621;47622 47622 0.04004127621897169 MPLAFSDKY 9 Oxidation (M) _M(Oxidation (M))PLAFSDKY_ M(1)PLAFSDKY M(93)PLAFSDKY 0 0 1 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2601928710938 2 544.260068 1086.50558 NaN NaN NaN NaN NaN NaN NaN 44.342 1 44.342 43.842 44.842 0 0 0 0 0.010041 1 24125 24125 92.653 64.166 1 40612 4464 27111 27699 47623 47623 814 -0.034210119026511165 MPLAFSDKY 9 Oxidation (M) _M(Oxidation (M))PLAFSDKY_ M(1)PLAFSDKY M(66)PLAFSDKY 0 0 1 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2605590820312 2 544.260068 1086.50558 NaN NaN NaN NaN NaN NaN NaN 44.499 1 44.183 43.683 44.683 -0.31585 0 0 0 0.030047 1 23744 23744 66.457 46.003 1 40613 4464 27111 27699 47624 47624 814 -0.034210119026511165 MPLAFSDKY 9 Unmodified _MPLAFSDKY_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2630615234375 2 536.26261 1070.51067 0.83001 0.0004451 -0.5975 -0.00032042 0.23251 0.00012468 536.2622642223346 59.738 0.38245 53.623 53.452 53.834 -6.1147 40 21 2 0 0 0 0.00065891 3 38351 38343;38351;38489 142.08 86.577 1 102240000 40614 4464 27111 27700 47625;47626;47627 47626 -0.021767080400195482 MPLALLVLL 9 Unmodified _MPLALLVLL_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.8230285644531 2 491.822107 981.629661 1.3935 0.00068534 0.1286 6.3249E-05 1.5221 0.00074859 491.82231686189573 102.91 0.064934 96.733 96.7 96.765 -6.1757 35 16 3 0 0 0 0.1492 1 69033 69033 28.173 0 1 5947200 40615 3750 27112 27701 47628 47628 0.1381111065549021 MPLAQPLVEHY 11 Unmodified _MPLAQPLVEHY_ 0 0 0 ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13 ENST00000272193.10_1_1:204085443-204095259:+|nuORF ENST00000272193.10_1_1:204085443-204095259:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.3330688476562 2 649.334098 1296.65364 1.216 0.00078958 -0.37604 -0.00024418 0.83994 0.0005454 649.3338911488835 63.881 0.35707 57.705 57.523 57.88 -6.1757 30 19 2 0 0 0 0.0033438 1 41301 41301 93.938 71.202 1 8553700 40616 5558 27113 27702 47629 47629 0.017182993512051326 MPLAQPLVEHY 11 Unmodified _MPLAQPLVEHY_ 0 0 0 ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13 ENST00000272193.10_1_1:204085443-204095259:+|nuORF ENST00000272193.10_1_1:204085443-204095259:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 649.334098 1296.65364 0.25114 0.00016308 -2.1031 -0.0013656 -1.852 -0.0012025 649.3337659918272 57.96 0.18797 57.47 57.41 57.598 -0.48974 -0.11738 -0.0019161 NaN 93.938 24 8 4 NaN NaN NaN NaN 0 NaN NaN 0 1053000 40617 5558 27113 27702 0.017182993512051326 MPLDKHMEM 9 Oxidation (M) _MPLDKHMEM(Oxidation (M))_ MPLDKHM(0.052)EM(0.948) M(-53)PLDKHM(-13)EM(13) 0 0 1 ENST00000478869.1_1_2:203760778-203765795:-|nuORF;ENSG00000138442|ENST00000261015|WDR12 ENST00000478869.1_1_2:203760778-203765795:-|nuORF ENST00000478869.1_1_2:203760778-203765795:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1707458496094 3 383.169667 1146.48717 0.88117 0.00033764 -0.30831 -0.00011813 0.57286 0.0002195 383.5043140246756 26.51 0.27265 23.558 23.422 23.694 -2.9511 31 13 3 0 0 0 0.033747 1 14599 14599 53.317 43.166 3 8684800 40618 5056 27114 27703 47630 47630 925 -0.0802121314050055 MPLDKHMEM 9 Unmodified _MPLDKHMEM_ 0 0 0 ENST00000478869.1_1_2:203760778-203765795:-|nuORF;ENSG00000138442|ENST00000261015|WDR12 ENST00000478869.1_1_2:203760778-203765795:-|nuORF ENST00000478869.1_1_2:203760778-203765795:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8384094238281 3 377.838029 1130.49226 1.1779 0.00044505 0.17252 6.5185E-05 1.3504 0.00051024 377.83804019148977 39.619 0.33071 35.168 34.964 35.294 -4.4509 46 20 3 0 0 0 0.21643 1 23510 23510 32.037 17.632 1 17488000 40619 5056 27114 27704 47631 47631 -0.06776909277891718 MPLEDMNEF 9 2 Oxidation (M) _M(Oxidation (M))PLEDM(Oxidation (M))NEF_ M(1)PLEDM(1)NEF M(55)PLEDM(55)NEF 0 0 2 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.22900390625 2 579.228107 1156.44166 0.032628 1.8899E-05 -0.047771 -2.767E-05 -0.015143 -8.7712E-06 579.2280921220797 41.975 0.44878 41.975 41.731 42.179 0 86 23 5 0 0 0 0.031062 1 22590 22590 54.774 46.863 1 84010000 40620 3336 27115 27705 47632 47632 596;597 -0.13030160121888912 MPLEDMNEF 9 2 Oxidation (M) _M(Oxidation (M))PLEDM(Oxidation (M))NEF_ M(1)PLEDM(1)NEF M(42)PLEDM(42)NEF 0 0 2 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2281494140625 2 579.228107 1156.44166 NaN NaN NaN NaN NaN NaN NaN 42.275 1 42.275 41.775 42.775 0 0 0 0 0.10545 1 22877 22877 42.095 31.911 1 40621 3336 27115 27705 47633 47633 596;597 -0.13030160121888912 MPLEDMNEF 9 2 Oxidation (M) _M(Oxidation (M))PLEDM(Oxidation (M))NEF_ M(1)PLEDM(1)NEF M(42)PLEDM(42)NEF 0 0 2 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.228515625 2 579.228107 1156.44166 NaN NaN NaN NaN NaN NaN NaN 42.536 1 42.536 42.036 43.036 0 0 0 0 0.10545 1 23035 23035 42.095 31.911 1 40622 3336 27115 27705 47634 47634 596;597 -0.13030160121888912 MPLEDMNEF 9 2 Oxidation (M) _M(Oxidation (M))PLEDM(Oxidation (M))NEF_ M(1)PLEDM(1)NEF M(74)PLEDM(74)NEF 0 0 2 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2286376953125 2 579.228107 1156.44166 1.042 0.00060354 -0.48416 -0.00028044 0.55782 0.0003231 579.2278388681058 49.703 0.40825 44.164 43.985 44.393 -5.5391 52 25 3 0 0 0 0.012148 1 31018 31018 74.423 59.584 1 34246000 40623 3336 27115 27705 47635 47635 596;597 -0.13030160121888912 MPLEDMNEF 9 Unmodified _MPLEDMNEF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2351684570312 2 563.233193 1124.45183 0.48568 0.00027355 -0.42654 -0.00024024 0.059138 3.3309E-05 563.2329870568268 67.627 0.2833 67.627 67.505 67.788 0 32 13 3 0 0 0 0.07916 1 37686 37686 37.974 30.064 1 3790400 40624 3336 27115 27706 47636 47636 -0.1054155239667125 MPLEDMNEF 9 Unmodified _MPLEDMNEF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2333374023438 2 563.233193 1124.45183 0.98525 0.00055492 -0.76573 -0.00043128 0.21952 0.00012364 563.2329472874707 75.709 0.64093 69.533 69.215 69.856 -6.1757 103 34 4 0 0 0 0.022193 3 49506 49383;49506;49622 61.357 45.51 1 95636000 40625 3336 27115 27706 47637;47638;47639 47638 -0.1054155239667125 MPLEDMNEF 9 Oxidation (M) _MPLEDM(Oxidation (M))NEF_ M(0.004)PLEDM(0.996)NEF M(-24)PLEDM(24)NEF 0 0 1 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2310180664062 2 571.23065 1140.44675 1.193 0.00068149 -0.63606 -0.00036334 0.55695 0.00031815 571.2304678388638 61.424 0.62888 55.276 54.918 55.547 -6.1478 78 31 3 0 0 0 0.019303 3 39396 39396;39521;39650 64.236 44.979 2 74124000 40626 3336 27115 27707 47640;47641;47642 47640 596;597 -0.11785856259302818 MPLEDMNEF 9 Oxidation (M) _M(Oxidation (M))PLEDMNEF_ M(0.998)PLEDM(0.002)NEF M(26)PLEDM(-26)NEF 0 0 1 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.232177734375 2 571.23065 1140.44675 1.1638 0.00066481 -0.046407 -2.6509E-05 1.1174 0.0006383 571.2310179817939 64.815 0.50504 58.639 58.363 58.868 -6.1757 60 27 3 0 0 0 0.06187 1 42115 42115 42.095 28.189 2 32926000 40627 3336 27115 27707 47643 47643 596;597 -0.11785856259302818 MPLEEGDTF 9 Unmodified _MPLEEGDTF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7265014648438 2 519.726058 1037.43756 1.1379 0.00059141 0.20846 0.00010834 1.3464 0.00069975 519.7263027076439 63.654 0.58768 57.479 57.177 57.765 -6.1757 80 33 3 0 0 0 0.026094 2 41215 41070;41215 57.471 35.008 1 50209000 40628 9729 27116 27708 47644;47645 47645 -0.07965881553309373 MPLEEGDTF 9 Unmodified _MPLEEGDTF_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1038.445068359375 1 1038.44484 1037.43756 0.85619 0.00088911 1.1887 0.0012344 2.0449 0.0021235 1038.4462994275943 63.662 0.47733 57.486 57.242 57.719 -6.1757 36 26 2 0 0 0 0.0041763 1 41266 41266 120.45 78.356 1 13657000 40629 9729 27116 27708 47646 47646 -0.07965881553309373 MPLESAYRHAL 11 Unmodified _MPLESAYRHAL_ 0 0 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.8895263671875 3 429.888657 1286.64414 1.5344 0.00065962 0.41332 0.00017768 1.9477 0.0008373 429.88882646861475 47.759 0.28909 42.525 42.386 42.675 -5.2339 32 17 2 0 0 0 0.31264 1 29674 29674 26.121 15.056 1 12995000 40630 7966 27117 27709 47647 47647 0.012285310656807269 MPLGADCARY 10 Carbamidomethyl (C) _MPLGADC(Carbamidomethyl (C))ARY_ MPLGADC(1)ARY MPLGADC(56)ARY 0 1 0 ENST00000503473.5_1_5:176730316-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-3|MXD3;ENST00000503782.1_1_5:176734591-176737711:-|nuORF;nc|ENSG00000213347|Q9BW11-2|MXD3;ENSG00000213347|ENST00000439742|MXD3;nc|ENSG00000213347|Q9BW11-4|MXD3 ENST00000503473.5_1_5:176730316-176737711:-|nuORF ENST00000503473.5_1_5:176730316-176737711:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2613525390625 2 577.260076 1152.5056 0.71535 0.00041294 0.71897 0.00041503 1.4343 0.00082797 577.2600186917799 42.152 0.34628 37.468 37.317 37.663 -4.6846 40 21 2 0 0 0 0.060508 2 25360 25360;25499 55.503 39.656 1 15941000 40631 10430 27118 27710 47648;47649 47648 939 -0.06455335174314314 MPLGARILF 9 Oxidation (M) _M(Oxidation (M))PLGARILF_ M(1)PLGARILF M(64)PLGARILF 0 0 1 ENST00000448704.5_1_7:43687059-43687284:-|nuORF;ENSG00000106603|ENST00000223336|COA1 ENST00000448704.5_1_7:43687059-43687284:-|nuORF ENST00000448704.5_1_7:43687059-43687284:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.297119140625 2 517.296788 1032.57902 1.0319 0.00053379 -0.96199 -0.00049764 0.069895 3.6156E-05 517.2965106295298 66.048 0.46588 66.058 65.855 66.321 0.0095596 89 23 5 0 0 0 0.019303 2 36269 36165;36269 64.236 37.895 1 80939000 40632 2441 27119 27711 47650;47651 47651 420 0.06403581330505403 MPLGARILF 9 Unmodified _MPLGARILF_ 0 0 0 ENST00000448704.5_1_7:43687059-43687284:-|nuORF;ENSG00000106603|ENST00000223336|COA1 ENST00000448704.5_1_7:43687059-43687284:-|nuORF ENST00000448704.5_1_7:43687059-43687284:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.300048828125 2 509.29933 1016.58411 0.43204 0.00022004 0.27807 0.00014162 0.71011 0.00036166 509.2994474888693 75.719 0.32699 75.767 75.582 75.909 0.047951 35 14 3 0 0 0 0.070838 2 41714 41714;41839 39.957 20.518 1 8546900 40633 2441 27119 27712 47652;47653 47652 0.07647885193114234 MPLGARILF 9 Unmodified _MPLGARILF_ 0 0 0 ENST00000448704.5_1_7:43687059-43687284:-|nuORF;ENSG00000106603|ENST00000223336|COA1 ENST00000448704.5_1_7:43687059-43687284:-|nuORF ENST00000448704.5_1_7:43687059-43687284:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2992858886719 2 509.29933 1016.58411 1.081 0.00055057 0.059539 3.0323E-05 1.1406 0.00058089 509.29932729489065 96.347 0.39354 90.171 89.96 90.354 -6.1757 45 23 2 0 0 0 0.023164 2 63753 63753;63876 60.39 34.048 1 146660000 40634 2441 27119 27712 47654;47655 47654 0.07647885193114234 MPLGGRASL 9 Unmodified _MPLGGRASL_ 0 0 0 nc|ENSG00000106012|Q6IPM2-2|IQCE;nc|ENSG00000106012|Q6IPM2-4|IQCE;ENSG00000106012|ENST00000402050|IQCE;ENST00000470731.5_1_7:2598728-2641152:+|nuORF nc|ENSG00000106012|Q6IPM2-2|IQCE nc|ENSG00000106012|Q6IPM2-2|IQCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2502746582031 2 451.249837 900.485122 0.72289 0.00032621 -0.44516 -0.00020088 0.27774 0.00012533 451.24968889003884 44.688 0.35241 39.836 39.701 40.053 -4.852 35 28 2 0 0 0 0.024882 1 27275 27275 58.679 5.1032 1 15855000 40635 2391 27120 27713 47656 47656 0.0308986222820522 MPLGHIMRL 9 Unmodified _MPLGHIMRL_ 0 0 0 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5339660644531 3 356.533269 1066.57798 2.0165 0.00071894 -0.38275 -0.00013646 1.6337 0.00058247 356.53314928248255 88.141 0.36677 81.965 81.765 82.132 -6.1757 31 20 2 0 0 0 0.1773 1 58077 58077 18.373 11.743 1 8214100 40636 4147 27121 27714 47657 47657 0.047350436899478154 MPLGLLWLGLA 11 Unmodified _MPLGLLWLGLA_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130911720-130912803:+|nuORF nc|ENSG00000148346|P80188-2|LCN2;ENST00000470902.5_1_9:130911720-130912803:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 MSMS AL20221201_MKP_PDAC_01 4 592.3511962890625 2 592.34902 1182.68349 NaN NaN NaN NaN NaN NaN NaN 102.74 1 96.566 96.066 97.066 -6.1757 0 0 0 0.82593 1 68931 68931 10.824 2.9138 1 40637 5923;13863 27122 27715 47658 47658 0.09945283087222379 MPLGSAVDIL 10 Oxidation (M) _M(Oxidation (M))PLGSAVDIL_ M(1)PLGSAVDIL M(48)PLGSAVDIL 0 0 1 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2760620117188 2 516.275718 1030.53688 0.60793 0.00031386 -1.0407 -0.00053728 -0.43277 -0.00022343 516.2757301841309 73.124 0.657 72.648 72.295 72.952 -0.47588 55 29 3 0 0 0 0.092434 1 40025 40025 48.346 22.947 1 1441700 40638 2860 27123 27716 47659 47659 497 0.022835611314576454 MPLGTIHCIF 10 Carbamidomethyl (C) _MPLGTIHC(Carbamidomethyl (C))IF_ MPLGTIHC(1)IF MPLGTIHC(61)IF 0 1 0 ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7999267578125 2 594.798837 1187.58312 0.78935 0.00046951 0.44545 0.00026495 1.2348 0.00073446 594.7993364351681 88.993 0.29733 82.817 82.653 82.951 -6.1757 21 16 2 0 0 0 0.043729 1 58768 58768 61.357 42.1 1 9480400 40639 2695 27124 27717 47660 47660 275 -0.0031669723814502504 MPLHTIIPL 9 Unmodified _MPLHTIIPL_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8082885742188 2 517.806988 1033.59942 1.1783 0.00061012 -0.52136 -0.00026996 0.65692 0.00034016 517.8068034526283 96.979 0.2388 90.803 90.656 90.895 -6.1757 19 13 2 0 0 0 0.078417 1 64261 64261 38.151 0 1 14006000 40640 7074 27125 27718 47661 47661 0.08396751990312623 MPLHTIIPLL 10 Unmodified _MPLHTIIPLL_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3511352539062 2 574.34902 1146.68349 2.0919 0.0012015 0.050529 2.9021E-05 2.1424 0.0012305 574.3488881907336 94.599 0.25832 94.613 94.464 94.722 0.014244 19 9 3 0 0 0 0.1899 1 52576 52576 34.102 14.845 1 1810000 40641 7074 27126 27719 47662 47662 0.11601283087225056 MPLHTIIPLL 10 Unmodified _MPLHTIIPLL_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3492431640625 2 574.34902 1146.68349 1.2087 0.00069423 -0.5831 -0.0003349 0.62563 0.00035933 574.3489779941572 100.42 0.12003 94.246 94.171 94.291 -6.1757 23 7 4 0 0 0 0.025861 1 67137 67137 85.357 85.357 1 92403000 40642 7074 27126 27719 47663 47663 0.11601283087225056 MPLHTIIPLL 10 Oxidation (M) _M(Oxidation (M))PLHTIIPLL_ M(1)PLHTIIPLL M(67)PLHTIIPLL 0 0 1 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3473510742188 2 582.346477 1162.6784 NaN NaN NaN NaN NaN NaN NaN 87.249 1 87.307 86.807 87.807 0.05822 0 0 0 0.014093 1 48499 48499 67.344 27.387 1 40643 7074 27126 27720 47664 47664 1215 0.10356979224593488 MPLHTIIPLL 10 Oxidation (M) _M(Oxidation (M))PLHTIIPLL_ M(1)PLHTIIPLL M(74)PLHTIIPLL 0 0 1 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3463134765625 2 582.346477 1162.6784 0.92972 0.00054142 -0.2081 -0.00012118 0.72163 0.00042024 582.3463325466072 99.27 0.14649 93.094 93.028 93.174 -6.1757 16 8 3 0 0 0 0.021369 1 66062 66062 74.423 19.649 1 38811000 40644 7074 27126 27720 47665 47665 1215 0.10356979224593488 MPLHVAPLL 9 Oxidation (M) _M(Oxidation (M))PLHVAPLL_ M(1)PLHVAPLL M(56)PLHVAPLL 0 0 1 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7913818359375 2 503.791338 1005.56812 0.081622 4.112E-05 -0.52956 -0.00026679 -0.44794 -0.00022567 503.7911466972273 62.797 0.62493 62.311 61.917 62.542 -0.48617 80 30 4 0 0 0 0.028712 2 34194 34194;34298 56.048 19.582 1 60172000 40645 9381 27127 27721 47666;47667 47666 1542 0.0655617895620253 MPLHVAPLL 9 Oxidation (M) _M(Oxidation (M))PLHVAPLL_ M(1)PLHVAPLL M(46)PLHVAPLL 0 0 1 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7906799316406 2 503.791338 1005.56812 0.35447 0.00017858 -1.2426 -0.000626 -0.88811 -0.00044742 503.79069880550844 62.398 0.31044 62.365 62.22 62.531 -0.032787 37 16 3 0 0 0 0.047696 1 34099 34099 45.75 9.2838 1 27027000 40646 9381 27127 27721 47668 47668 1542 0.0655617895620253 MPLHVAPLL 9 Unmodified _MPLHVAPLL_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7951049804688 2 495.793881 989.573209 0.66376 0.00032909 -0.38558 -0.00019117 0.27817 0.00013792 495.793880502829 72.265 0.30655 71.789 71.594 71.9 -0.47609 27 13 3 0 0 0 0.085487 1 39540 39540 36.466 8.2929 1 1756000 40647 9381 27127 27722 47669 47669 0.0780048281881136 MPLHVAPLL 9 Unmodified _MPLHVAPLL_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7949829101562 2 495.793881 989.573209 0.85172 0.00042228 -0.79895 -0.00039611 0.052767 2.6162E-05 495.7937693346521 71.662 0.38176 71.701 71.49 71.871 0.039024 52 17 4 0 0 0 0.047696 1 39418 39418 45.75 9.2838 1 10252000 40648 9381 27127 27722 47670 47670 0.0780048281881136 MPLHVAPLL 9 Unmodified _MPLHVAPLL_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7946166992188 2 495.793881 989.573209 1.1085 0.00054958 -0.32563 -0.00016144 0.78285 0.00038813 495.79387233342436 90.556 1.4129 84.381 83.562 84.975 -6.1757 205 82 3 0 0 0 0.01018 7 59717 59321;59451;59588;59717;59849;59979;60113 79.935 43.468 1 79776000 40649 9381 27127 27722 47671;47672;47673;47674;47675;47676;47677 47674 0.0780048281881136 MPLLENLMRF 10 2 Oxidation (M) _M(Oxidation (M))PLLENLM(Oxidation (M))RF_ M(1)PLLENLM(1)RF M(64)PLLENLM(64)RF 0 0 2 ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3284912109375 2 648.327959 1294.64136 0.51596 0.00033451 -0.6006 -0.00038938 -0.084633 -5.487E-05 648.3275709281213 67.615 0.65739 67.633 67.277 67.934 0.018036 98 32 4 0 0 0 0.038363 3 37003 37003;37110;37215 63.961 50.918 1 12566000 40650 13177 27128 27723 47678;47679;47680 47678 1761;1762 0.005829396165154321 MPLLENLMRF 10 Oxidation (M) _MPLLENLM(Oxidation (M))RF_ MPLLENLM(1)RF M(-46)PLLENLM(46)RF 0 0 1 ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.3317260742188 2 640.330501 1278.64645 0.30245 0.00019367 0.17896 0.00011459 0.48141 0.00030826 640.8323435336162 79.35 0.58842 79.405 79.233 79.821 0.054977 58 22 3 0 0 0 0.095786 1 43870 43870 47.594 34.552 2 2666500 40651 13177 27128 27724 47681 47681 1761;1762 0.018272434791015257 MPLLENLMRF 10 Unmodified _MPLLENLMRF_ 0 0 0 ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF ENST00000426421.5_1_7:116528208-116538866:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3340454101562 2 632.333044 1262.65154 0.93742 0.00059276 -0.022156 -1.401E-05 0.91526 0.00057875 632.3334621448203 100.46 0.18748 94.284 94.187 94.374 -6.1757 29 11 5 0 0 0 0.013158 1 67154 67154 107.19 55.557 1 99813000 40652 13177 27128 27725 47682 47682 0.03071547341733094 MPLLLLLLLL 10 Unmodified _MPLLLLLLLL_ 0 0 0 ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C ENSG00000185245|ENST00000329125|GP1BA ENSG00000185245|ENST00000329125|GP1BA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3956298828125 2 576.395439 1150.77632 NaN NaN NaN NaN NaN NaN NaN 84.186 1 84.186 83.686 84.686 0 0 0 0 1.0061 1 46675 46675 0 0 1 40653 9349 27129 27726 47683 47683 0.20696787820588725 MPLLLLLLLL 10 Unmodified _MPLLLLLLLL_ 0 0 0 ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C ENSG00000185245|ENST00000329125|GP1BA ENSG00000185245|ENST00000329125|GP1BA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3956298828125 2 576.395439 1150.77632 NaN NaN NaN NaN NaN NaN NaN 86.021 1 86.021 85.521 86.521 0 0 0 0 1.0061 1 47656 47656 0 0 1 40654 9349 27129 27726 47684 47684 0.20696787820588725 MPLLLLLLLL 10 Unmodified _MPLLLLLLLL_ 0 0 0 ENSG00000185245|ENST00000329125|GP1BA;nc|ENSG00000143434|Q9H3T2-2|SEMA6C;ENSG00000143434|ENST00000368914|SEMA6C;nc|ENSG00000143434|Q9H3T2-3|SEMA6C ENSG00000185245|ENST00000329125|GP1BA ENSG00000185245|ENST00000329125|GP1BA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3952026367188 2 576.395439 1150.77632 NaN NaN NaN NaN NaN NaN NaN 86.509 1 86.509 86.009 87.009 0 0 0 0 1.0061 1 47917 47917 0 0 1 40655 9349 27129 27726 47685 47685 0.20696787820588725 MPLLLLLLLLP 11 Unmodified _MPLLLLLLLLP_ 0 0 0 ENSG00000185245|ENST00000329125|GP1BA ENSG00000185245|ENST00000329125|GP1BA ENSG00000185245|ENST00000329125|GP1BA MSMS AL20221201_MKP_PDAC_01 4 416.950439453125 3 416.950306 1247.82909 NaN NaN NaN NaN NaN NaN NaN 11.997 1 9.515 9.015 10.015 -2.482 0 0 0 0.9435 1 6046 6046 0 0 1 40656 9349 27130 27727 47686 47686 0.2150874588339775 MPLLRQEEL 9 Oxidation (M) _M(Oxidation (M))PLLRQEEL_ M(1)PLLRQEEL M(89)PLLRQEEL 0 0 1 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8082275390625 2 572.805174 1143.59579 0.87713 0.00050242 1.5685 0.00089845 2.4456 0.0014009 572.8060862704646 42.562 0.45853 42.562 42.26 42.718 0 59 22 4 0 0 0 0.0086722 2 22939 22939;23047 88.954 33.373 1 10787000 40657 551 27131 27728 47687;47688 47687 79 0.029740374257926305 MPLLRQEEL 9 Unmodified _MPLLRQEEL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8072509765625 2 564.807716 1127.60088 NaN NaN NaN NaN NaN NaN NaN 53.254 1 52.803 52.303 53.303 -0.45173 0 0 0 0.032808 1 28807 28807 65.235 29.108 1 40658 551 27131 27729 47689 47689 0.042183412884014615 MPLLRQEEL 9 Unmodified _MPLLRQEEL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8084106445312 2 564.807716 1127.60088 1.2774 0.0007215 0.037385 2.1115E-05 1.3148 0.00074261 564.8079215157051 59.274 0.38405 53.2 52.993 53.377 -6.0745 37 21 2 0 0 0 0.0055767 1 37983 37983 115.69 63.424 1 41830000 40659 551 27131 27729 47690 47690 0.042183412884014615 MPLPEAAPA 9 Unmodified _MPLPEAAPA_ 0 0 0 PCDHB15|p.L671M|1|0.09|ENSG00000113248|chr5:141247589-141247589|C/A|missense_variant PCDHB15|p.L671M|1|0.09|ENSG00000113248|chr5:141247589-141247589|C/A|missense_variant PCDHB15|p.L671M|1|0.09|ENSG00000113248|chr5:141247589-141247589|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 897.464111328125 1 896.454616 895.447339 0.12463 0.00011172 -0.52783 -0.00047317 -0.4032 -0.00036145 896.4508360037445 52.717 0.22313 52.717 52.596 52.82 0 15 9 2 0 0 0 0.39863 1 29146 29146 12.532 0 1 1873800 40660 16682 27132 27730 47691 47691 -0.004566487572787992 MPLPEEVTQIL 11 Unmodified _MPLPEEVTQIL_ 0 0 0 nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENSG00000140598|ENST00000268206|EFL1 nc|ENSG00000140598|Q7Z2Z2-2|EFL1 nc|ENSG00000140598|Q7Z2Z2-2|EFL1 MSMS AL20221201_MKP_PDAC_01 4 635.3441162109375 2 635.341589 1268.66863 NaN NaN NaN NaN NaN NaN NaN 99.961 1 93.786 93.286 94.286 -6.1757 0 0 0 0.27092 1 66736 66736 43.772 17.504 1 40661 5258 27133 27731 47692 47692 0.04503746428554223 MPLPGTKAL 9 Oxidation (M) _M(Oxidation (M))PLPGTKAL_ M(1)PLPGTKAL M(42)PLPGTKAL 0 0 1 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2672424316406 2 472.267696 942.520839 0.37134 0.00017537 -1.6985 -0.00080215 -1.3272 -0.00062677 472.2671797232363 36.017 0.27761 36.017 35.836 36.113 0 29 13 3 0 0 0 0.06294 1 19041 19041 41.84 23.705 1 5896100 40662 10905 27134 27732 47693 47693 1736 0.04727899685212833 MPLPGTKAL 9 Oxidation (M) _M(Oxidation (M))PLPGTKAL_ M(1)PLPGTKAL M(44)PLPGTKAL 0 0 1 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2688903808594 2 472.267696 942.520839 -0.42503 -0.00020073 1.2906 0.00060949 0.86554 0.00040876 472.2683387977861 36.153 0.30016 35.903 35.786 36.086 -0.2497 22 13 2 0 0 0 0.05483 1 18927 18927 43.772 25.637 1 4470900 40663 10905 27134 27732 47694 47694 1736 0.04727899685212833 MPLPGTKAL 9 Unmodified _MPLPGTKAL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2710876464844 2 464.270238 926.525924 0.90413 0.00041976 -0.40691 -0.00018892 0.49722 0.00023084 464.2698785217504 52.962 0.411 47.158 46.972 47.383 -5.8042 33 22 2 0 0 0 0.01958 2 33418 33418;33538 63.961 23.512 1 30245000 40664 10905 27134 27733 47695;47696 47695 0.05972203547821664 MPLPPPFAF 9 Unmodified _MPLPPPFAF_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897115-64897501:-|nuORF;ENST00000527765.1_1_11:64896153-64897501:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MSMS AL20221201_MKP_PDAC_01 4 508.7679138183594 2 508.767332 1015.52011 NaN NaN NaN NaN NaN NaN NaN 101.21 1 95.037 94.537 95.537 -6.1757 0 0 0 0.029035 1 67870 67870 67.413 39.24 1 40665 6845 27135 27734 47697 47697 0.01297105036155699 MPLQDSISL 9 Oxidation (M) _M(Oxidation (M))PLQDSISL_ M(1)PLQDSISL M(61)PLQDSISL 0 0 1 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2572021484375 2 510.257525 1018.5005 0.60072 0.00030652 -0.40023 -0.00020422 0.20049 0.0001023 510.25708402138554 59.784 0.38536 59.784 59.577 59.962 0 53 17 4 0 0 0 0.022193 1 33342 33342 61.357 19.263 1 16257000 40666 9054 27136 27735 47698 47698 1519 -0.00801315765261279 MPLQDSISL 9 Unmodified _MPLQDSISL_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2603149414062 2 502.260068 1002.50558 0.40421 0.00020302 -0.3827 -0.00019221 0.021517 1.0807E-05 502.2600904538879 69.713 0.3091 69.713 69.578 69.887 0 26 14 2 0 0 0 0.43463 1 38816 38816 10.824 0.75 1 820280 40667 9054 27136 27736 47699 47699 0.00442988097347552 MPLQDSISL 9 Unmodified _MPLQDSISL_ 0 0 0 ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 ENSG00000182446|ENST00000331134|NPLOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2605285644531 2 502.260068 1002.50558 0.89185 0.00044794 -1.7507 -0.00087932 -0.85888 -0.00043138 502.25928234671545 77.881 0.68115 71.705 71.392 72.073 -6.1757 72 38 2 0 0 0 0.05447 1 50951 50951 43.858 9.7559 1 50215000 40668 9054 27136 27736 47700 47700 0.00442988097347552 MPLQLIQE 8 Unmodified _MPLQLIQE_ 0 0 0 nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF nc|ENSG00000079616|Q14807-2|KIF22 nc|ENSG00000079616|Q14807-2|KIF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7662658691406 2 486.265153 970.515753 -0.18491 -8.9914E-05 0.47762 0.00023225 0.29271 0.00014233 486.2655439270427 34.944 0.49123 34.722 34.446 34.938 -0.2224 67 21 4 0 0 0 0.78849 1 18183 18183 9.3474 9.3474 1 16182000 40669 1281 27137 27737 47701 47701 0.029315958225879513 MPLQLLLLL 9 Unmodified _MPLQLLLLL_ 0 0 0 ENSG00000110876|ENST00000550948|SELPLG;nc|ENSG00000110876|Q14242-2|SELPLG REV__ENST00000377524.7_1_10:17756606-17756696:+|nuORF REV__ENST00000377524.7_1_10:17756606-17756696:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3423461914062 2 527.340664 1052.66677 1.4452 0.00076213 -1.9126 -0.0010086 -0.4674 -0.00024648 527.3410756443943 102.9 0.07 96.729 96.7 96.77 -6.1757 32 17 3 0 0 0 0.2143 1 69034 69034 21.747 0.87544 1 3498100 40670 2749 27138 27738 47702 47702 0.1425478220126024 MPLRDDYEIEY 11 Oxidation (M) _M(Oxidation (M))PLRDDYEIEY_ M(1)PLRDDYEIEY M(41)PLRDDYEIEY 0 0 1 nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 730.3236694335938 2 730.324125 1458.6337 0.51412 0.00037548 -0.017697 -1.2925E-05 0.49643 0.00036255 730.324059216225 47.734 0.46485 47.734 47.471 47.936 0 60 21 4 0 0 0 0.11513 1 26165 26165 40.725 29.23 1 7175800 40671 8279 27139 27739 47703 47703 1398 -0.07727541170083896 MPLRDDYEIEY 11 Unmodified _MPLRDDYEIEY_ 0 0 0 nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B nc|ENSG00000173011|Q86TJ2-3|TADA2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.3279418945312 2 722.326667 1442.63878 0.79971 0.00057765 -0.36912 -0.00026662 0.43059 0.00031102 722.3268892784279 61.759 0.47177 55.583 55.331 55.803 -6.1757 33 24 2 0 0 0 0.31498 1 39865 39865 25.997 7.6243 1 12102000 40672 8279 27139 27740 47704 47704 -0.06483237307452328 MPLSVFPYY 9 Oxidation (M) _M(Oxidation (M))PLSVFPYY_ M(1)PLSVFPYY M(57)PLSVFPYY 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7733764648438 2 566.772811 1131.53107 0.72715 0.00041213 -0.87334 -0.00049499 -0.1462 -8.286E-05 566.7723757960374 82.898 0.64037 82.401 81.917 82.557 -0.49751 98 27 4 0 0 0 0.027803 3 45269 45172;45269;45365 56.541 44.901 1 7045700 40673 8296;16388 27140 27741 47705;47706;47707 47706 1402 -0.029435373802243703 MPLSVFPYY 9 Oxidation (M) _M(Oxidation (M))PLSVFPYY_ M(1)PLSVFPYY M(40)PLSVFPYY 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7724609375 2 566.772811 1131.53107 1.2078 0.00068454 -0.74173 -0.00042039 0.46606 0.00026415 566.771767869536 89.963 0.62127 83.787 83.47 84.091 -6.1757 90 34 4 0 0 0 0.068777 1 59553 59553 40.449 22.314 1 63490000 40674 8296;16388 27140 27741 47708 47708 1402 -0.029435373802243703 MPLSVFPYY 9 Unmodified _MPLSVFPYY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.77490234375 2 558.775354 1115.53615 1.6866 0.00094244 -0.0015243 -8.5172E-07 1.6851 0.00094159 558.7752754261883 92.123 0.42335 92.153 91.939 92.362 0.030197 40 15 3 0 0 0 0.03327 2 51189 51189;51294 53.576 33.122 1 6248900 40675 8296;16388 27140 27742 47709;47710 47709 -0.01699233517592802 MPLSVFPYY 9 Unmodified _MPLSVFPYY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7764892578125 2 558.775354 1115.53615 0.59575 0.00033289 0.25295 0.00014134 0.84871 0.00047424 558.7761141293688 99.881 0.25013 93.705 93.588 93.838 -6.1757 53 18 4 0 0 0 0.019979 1 66659 66659 63.563 47.716 1 330030000 40676 8296;16388 27140 27742 47711 47711 -0.01699233517592802 MPLYAVMY 8 2 Oxidation (M) _M(Oxidation (M))PLYAVM(Oxidation (M))Y_ M(1)PLYAVM(1)Y M(42)PLYAVM(42)Y 0 0 2 ENSG00000114209|ENST00000392750|PDCD10;ENST00000481136.1_1_3:167422617-167437945:-|nuORF ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2333374023438 2 510.232464 1018.45038 -0.18497 -9.4377E-05 -0.1863 -9.5058E-05 -0.37127 -0.00018944 510.23227939717106 54.682 0.33144 54.215 54.007 54.339 -0.46664 28 16 2 0 0 0 0.42709 1 29595 29595 41.817 20.946 1 4594700 40677 3024 27141 27743 47712 47712 524;525 -0.05811141694766775 MPLYAVMY 8 2 Oxidation (M) _M(Oxidation (M))PLYAVM(Oxidation (M))Y_ 0 0 2 ENSG00000114209|ENST00000392750|PDCD10;ENST00000481136.1_1_3:167422617-167437945:-|nuORF ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 510.232464 1018.45038 0.31118 0.00015877 0.026414 1.3477E-05 0.3376 0.00017225 510.23243337756844 54.359 0.15641 54.292 54.162 54.319 -0.066936 0.038479 0.00018393 NaN 41.817 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 784760 40678 3024 27141 27743 524;525 -0.05811141694766775 MPLYAVMY 8 Unmodified _MPLYAVMY_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10;ENST00000481136.1_1_3:167422617-167437945:-|nuORF ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 987.468994140625 1 987.467823 986.460547 1.217 0.0012017 -0.44975 -0.00044412 0.76721 0.0007576 987.4674524028435 86.669 0.32074 80.494 80.322 80.643 -6.1757 27 16 2 0 0 0 0.42709 2 57055 57055;57184 41.817 17.607 1 12380000 40679 3024 27141 27744 47713;47714 47713 -0.033225339695263756 MPLYNKKYKE 10 Unmodified _MPLYNKKYKE_ 0 0 0 REV__ENSG00000151849|ENST00000381884|CENPJ REV__ENSG00000151849|ENST00000381884|CENPJ MSMS AL20221201_MKP_PDAC_01 4 438.5701599121094 3 438.568924 1312.68494 NaN NaN NaN NaN NaN NaN NaN 22.639 1 19.86 19.36 20.36 -2.7784 0 0 0 0.97784 1 12186 12186 3.0723 0.63748 1 + 40680 21095 27142 27745 47715 47715 0.04110872385285802 MPMGPDQKY 9 2 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))GPDQKY_ M(1)PM(1)GPDQKY M(50)PM(50)GPDQKY 0 0 2 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7343139648438 2 549.73336 1097.45217 1.0375 0.00057033 0.029644 1.6297E-05 1.0671 0.00058663 549.7333618134434 19.752 0.21865 17.096 16.987 17.205 -2.6564 19 14 2 0 0 0 0.040683 1 10490 10490 49.554 38.73 1 2849400 40681 3749 27143 27746 47716 47716 655;656 -0.09266132676793859 MPMGPDQKY 9 Oxidation (M) _MPM(Oxidation (M))GPDQKY_ M(0.018)PM(0.982)GPDQKY M(-17)PM(17)GPDQKY 0 0 1 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7357788085938 2 541.735902 1081.45725 0.30726 0.00016646 -0.95617 -0.00051799 -0.64891 -0.00035154 541.7354655795275 27.489 0.44754 24.452 24.338 24.785 -3.0365 35 22 2 0 0 0 0.0086209 2 15262 15262;15383 89.401 57.095 2 13889000 40682 3749 27143 27747 47717;47718 47717 655;656 -0.08021828814185028 MPMGPDQKY 9 Unmodified _MPMGPDQKY_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.76513671875 2 533.738445 1065.46234 1.2438 0.00066389 0.48993 0.0002615 1.7338 0.00092538 533.7390067820726 35.959 0.26922 31.767 31.678 31.948 -4.1928 41 16 3 0 0 0 0.1176 1 20987 20987 36.127 25.303 1 11675000 40683 3749 27143 27748 47719 47719 -0.06777524951576197 MPMGSLEHEGL 11 2 Oxidation (M) _M(Oxidation (M))PM(Oxidation (M))GSLEHEGL_ M(1)PM(1)GSLEHEGL M(63)PM(63)GSLEHEGL 0 0 2 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7677612304688 2 616.767931 1231.52131 -0.065827 -4.06E-05 -0.47998 -0.00029603 -0.5458 -0.00033663 616.7676407524712 31.831 0.4021 31.831 31.58 31.983 0 36 19 2 0 0 0 0.014934 1 16611 16611 62.573 49.53 1 1921800 40684 8764 27144 27749 47720 47720 1477;1478 -0.0851909344789874 MPMPMPVT 8 Unmodified _MPMPMPVT_ 0 0 0 REV__nc|ENSG00000182149|P53990-2|IST1 REV__nc|ENSG00000182149|P53990-2|IST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2109069824219 2 452.210478 902.406402 NaN NaN NaN NaN NaN NaN NaN 73.601 1 73.601 73.101 74.101 0 0 0 0 0.97444 1 40976 40976 0.79363 0.10326 1 + 40685 23244 27145 27750 47721 47721 -0.04870449392740284 MPMVTDNKM 9 2 Oxidation (M) _MPM(Oxidation (M))VTDNKM(Oxidation (M))_ M(0.143)PM(0.857)VTDNKM(1) M(-7.8)PM(7.8)VTDNKM(40) 0 0 2 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7349853515625 2 549.735045 1097.45554 0.15787 8.6789E-05 0.37741 0.00020747 0.53528 0.00029426 549.7353531191529 23.881 0.31524 21.054 20.898 21.213 -2.8273 22 18 2 0 0 0 0.044011 1 12928 12928 47.749 38.366 3 3147700 40686 8479 27146 27751 47722 47722 1436;1437 -0.08929205894446568 MPMVTDNKM 9 Unmodified _MPMVTDNKM_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.73974609375 2 533.740131 1065.46571 0.653 0.00034853 -0.25899 -0.00013823 0.39401 0.0002103 533.7399328838267 42.241 0.28771 37.557 37.406 37.693 -4.6846 31 17 2 0 0 0 0.0038489 1 25512 25512 122.18 73.833 1 11413000 40687 8479 27146 27752 47723 47723 -0.06440598169228906 MPNEEARARIM 11 Unmodified _MPNEEARARIM_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.8847961425781 3 439.884918 1316.63293 0.74121 0.00032605 0.054389 2.3925E-05 0.7956 0.00034997 439.88499162141875 32.786 0.29049 28.929 28.753 29.044 -3.8562 32 15 3 0 0 0 0.078696 1 18692 18692 44.945 26.223 1 14658000 40688 7406 27147 27753 47724 47724 -0.012726143001373202 MPNENIPEL 9 Oxidation (M) _M(Oxidation (M))PNENIPEL_ M(1)PNENIPEL M(85)PNENIPEL 0 0 1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7526245117188 2 536.752607 1071.49066 0.41581 0.00022319 -0.42175 -0.00022638 -0.0059428 -3.1898E-06 536.7524099039454 52.92 0.63588 52.92 52.53 53.166 0 104 29 4 0 0 0 0.0090948 3 29373 29158;29263;29373 85.272 33.004 1 55037000 40689 3097 27148 27754 47725;47726;47727 47727 542 -0.04222503770665753 MPNENIPEL 9 Unmodified _MPNENIPEL_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7546997070312 2 528.755149 1055.49575 0.71936 0.00038037 0.92632 0.00048979 1.6457 0.00087016 528.756060562391 59.886 0.74128 59.886 59.627 60.368 0 70 33 3 0 0 0 0.08691 1 33391 33391 36.127 3.8215 1 10303000 40690 3097 27148 27755 47728 47728 -0.029781999080341848 MPNENIPEL 9 Unmodified _MPNENIPEL_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.755126953125 2 528.755149 1055.49575 NaN NaN NaN NaN NaN NaN NaN 67.445 1 61.269 60.769 61.769 -6.1757 0 0 0 0.059498 1 43932 43932 53.833 9.9745 1 40691 3097 27148 27755 47729 47729 -0.029781999080341848 MPNGDHIVSA 10 Unmodified _MPNGDHIVSA_ 0 0 0 ENSG00000007168|ENST00000397195|PAFAH1B1;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENST00000572915.6_1_17:2573570-2586914:+|nuORF ENSG00000007168|ENST00000397195|PAFAH1B1;ENST00000572915.6_1_17:2573570-2586914:+|nuORF ENST00000572915.6_1_17:2573570-2586914:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.744873046875 2 520.745116 1039.47568 0.88737 0.00046209 -0.90142 -0.00046941 -0.014049 -7.3162E-06 520.7447693185754 34.447 0.38116 30.352 30.057 30.438 -4.0951 23 21 2 0 0 0 0.34435 1 19842 19842 24.882 8.7325 1 9759100 40692 356;15495 27149 27756 47730 47730 -0.04247950847980064 MPNGTVQRF 9 Oxidation (M) _M(Oxidation (M))PNGTVQRF_ M(1)PNGTVQRF M(54)PNGTVQRF 0 0 1 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2599487304688 2 533.260933 1064.50731 -0.19431 -0.00010362 -1.983 -0.0010575 -2.1773 -0.0011611 533.2605170195782 25.1 0.23685 25.1 25.003 25.239 0 35 14 3 0 0 0 0.032796 1 12838 12838 53.833 29.159 1 3461700 40693 8125 27150 27757 47731 47731 1376 -0.02235958094047419 MPNGTVQRF 9 Unmodified _MPNGTVQRF_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;ENST00000582406.1_1_17:65940388-65941531:+|nuORF;ENST00000584931.1_1_17:65936727-65940601:+|nuORF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.8107299804688 2 525.263476 1048.5124 1.118 0.00058727 0.045502 2.39E-05 1.1635 0.00061117 525.263954220259 36.956 0.45318 32.672 32.438 32.891 -4.2835 72 27 3 0 0 0 0.13704 1 21618 21618 26.268 16.921 1 35787000 40694 8125 27150 27758 47732 47732 -0.009916542314158505 MPNGWQVPAY 10 Unmodified _MPNGWQVPAY_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000486392.5_1_2:70439853-70442301:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7725830078125 2 581.771134 1161.52771 0.81819 0.000476 0.1046 6.0851E-05 0.92279 0.00053685 581.7708919817474 73.422 0.26656 67.246 67.059 67.326 -6.1757 18 12 2 0 0 0 0.11755 1 48042 48042 43.858 23.405 1 9922000 40695 3183 27151 27759 47733 47733 -0.04658787434209444 MPNGWQVPAY 10 Unmodified _MPNGWQVPAY_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000486392.5_1_2:70439853-70442301:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MSMS AL20221201_MKP_PDAC_01 4 581.7713623046875 2 581.771134 1161.52771 NaN NaN NaN NaN NaN NaN NaN 73.649 1 67.473 66.973 67.973 -6.1757 0 0 0 0.51756 1 48160 48160 25.399 10.561 1 40696 3183 27151 27759 47734 47734 -0.04658787434209444 MPNHSASIQL 10 Oxidation (M) _M(Oxidation (M))PNHSASIQL_ M(1)PNHSASIQL M(51)PNHSASIQL 0 0 1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2716064453125 2 557.271498 1112.52844 -0.16108 -8.9766E-05 -1.0836 -0.00060386 -1.2447 -0.00069363 557.7722667329261 35.241 0.41512 35.019 34.83 35.245 -0.2224 61 18 4 0 0 0 0.078742 1 18421 18421 51.415 17.014 1 14021000 40697 889;16041 27152 27760 47735 47735 137 -0.02331992785161674 MPNHSASIQL 10 Unmodified _MPNHSASIQL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.274169921875 2 549.274041 1096.53353 0.41952 0.00023043 -0.4456 -0.00024476 -0.026074 -1.4322E-05 549.273988895506 45.058 0.57635 40.206 39.918 40.495 -4.852 112 38 4 0 0 0 0.1379 3 27721 27437;27578;27721 47.594 18.513 1 211420000 40698 889;16041 27152 27761 47736;47737;47738 47738 -0.01087688922552843 MPNHSASIQL 10 Unmodified _MPNHSASIQL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.274041 1096.53353 0.58344 0.00032047 1.3693 0.00075211 1.9527 0.0010726 549.2741146171074 40.572 0.25327 40.269 40.044 40.297 -0.30304 0.031846 0.0018 NaN 47.594 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3339100 40699 889;16041 27152 27761 -0.01087688922552843 MPNISYAW 8 Unmodified _MPNISYAW_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2283935546875 2 491.228571 980.442588 0.78681 0.0003865 -1.5938 -0.00078294 -0.80702 -0.00039643 491.22749959550646 80.3 0.38853 74.124 73.908 74.296 -6.1757 27 22 2 0 0 0 0.36356 1 52673 52673 48.346 23.672 1 9522400 40700 7383 27153 27762 47739 47739 -0.04841532900047696 MPNKQPESSL 10 Unmodified _MPNKQPESSL_ 0 0 0 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 ENSG00000170385|ENST00000367001|SLC30A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7803955078125 2 565.779156 1129.54376 0.67244 0.00038045 2.232 0.0012628 2.9045 0.0016433 565.7807423281749 28.182 0.25757 25.034 24.861 25.119 -3.1482 18 13 2 0 0 0 0.031932 1 15679 15679 67.081 35.812 1 5104700 40701 7980 27154 27763 47740 47740 -0.015831259879860227 MPNLDSVTL 9 Oxidation (M) _M(Oxidation (M))PNLDSVTL_ M(1)PNLDSVTL M(42)PNLDSVTL 0 0 1 nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6 nc|ENSG00000133103|Q9Y2V7-2|COG6 nc|ENSG00000133103|Q9Y2V7-2|COG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2497253417969 2 503.2497 1004.48485 0.59645 0.00030016 -1.9553 -0.00098399 -1.3588 -0.00068382 503.2490544023215 59.275 0.44094 59.275 59.024 59.465 0 36 18 3 0 0 0 0.06294 1 33025 33025 41.84 19.103 1 3270700 40702 4486 27155 27764 47741 47741 818 -0.017216022822935884 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(68)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2798461914062 2 614.27678 1226.53901 0.70696 0.00043427 -1.1062 -0.00067954 -0.39928 -0.00024527 614.2766977424717 36.793 0.32915 36.793 36.648 36.977 0 49 15 4 0 0 0 0.03037 3 19493 19480;19493;19592 67.838 41.691 1 15297000 40703 5369 27156 27765 47742;47743;47744 47743 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(90)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2760620117188 2 614.27678 1226.53901 0.4182 0.00025689 -0.65207 -0.00040055 -0.23386 -0.00014366 614.2765202684714 37.162 0.33881 37.162 36.977 37.316 0 55 16 4 0 0 0 0.0086576 2 19800 19699;19800 90.135 76.229 1 17177000 40704 5369 27156 27765 47745;47746 47746 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(58)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2779541015625 2 614.27678 1226.53901 -0.13625 -8.3692E-05 1.3747 0.00084447 1.2385 0.00076078 614.2777436109146 37.092 0.28249 36.843 36.708 36.99 -0.2497 30 11 3 0 0 0 0.051223 1 19457 19457 57.722 23.32 1 4907800 40705 5369 27156 27765 47747 47747 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(68)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.277099609375 2 614.27678 1226.53901 0.0023071 1.4172E-06 0.88499 0.00054363 0.8873 0.00054505 614.2772071064746 37.531 0.31055 37.26 37.039 37.35 -0.27133 30 12 3 0 0 0 0.03037 1 19678 19678 67.838 57.014 1 8242400 40706 5369 27156 27765 47748 47748 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(86)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2774047851562 2 614.27678 1226.53901 0.96042 0.00058997 -0.17352 -0.00010659 0.7869 0.00048338 614.2770352624956 41.085 0.39447 36.478 36.244 36.639 -4.6079 52 24 3 0 0 0 0.01074 1 24556 24556 86.332 70.485 1 14561000 40707 5369 27156 27765 47749 47749 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ M(1)PNPEGRYTF M(73)PNPEGRYTF 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.276123046875 2 614.27678 1226.53901 0.56391 0.0003464 -0.47984 -0.00029475 0.08407 5.1642E-05 614.2769149641479 41.556 0.38839 36.948 36.772 37.161 -4.6079 63 25 3 0 0 0 0.022967 2 25035 24898;25035 72.968 40.662 1 31868000 40708 5369 27156 27765 47750;47751 47751 988 -0.06520010130748233 MPNPEGRYTF 10 Oxidation (M) _M(Oxidation (M))PNPEGRYTF_ 0 0 1 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 614.27678 1226.53901 0.080381 4.9376E-05 0.80473 0.00049432 0.88511 0.0005437 614.2766585670723 37.15 0.11025 37.171 37.13 37.24 0.021545 0.035989 0.0010228 NaN 90.135 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 583900 40709 5369 27156 27765 988 -0.06520010130748233 MPNPEGRYTF 10 Unmodified _MPNPEGRYTF_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2799682617188 2 606.279323 1210.54409 0.66709 0.00040444 -0.57321 -0.00034753 0.093871 5.6912E-05 606.2790080244 51.001 0.40408 45.352 45.154 45.558 -5.649 61 24 3 0 0 0 0.0086576 2 31969 31969;32101 90.135 68.388 1 109170000 40710 5369 27156 27766 47752;47753 47752 -0.052757062681166644 MPNSPAPHF 9 Oxidation (M) _M(Oxidation (M))PNSPAPHF_ M(1)PNSPAPHF M(92)PNSPAPHF 0 0 1 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2297058105469 2 507.229102 1012.44365 -0.3428 -0.00017388 1.0684 0.00054194 0.72562 0.00036806 507.22949003755605 31.984 0.28456 31.984 31.82 32.105 0 38 13 4 0 0 0 0.0082661 1 16678 16678 92.491 62.267 1 5001900 40711 2879 27157 27767 47754 47754 500 -0.06207318531119199 MPNSPAPHF 9 Oxidation (M) _M(Oxidation (M))PNSPAPHF_ M(1)PNSPAPHF M(92)PNSPAPHF 0 0 1 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2290649414062 2 507.229102 1012.44365 -0.72459 -0.00036753 0.64768 0.00032852 -0.076908 -3.901E-05 507.22950004221724 32.239 0.29039 32.239 32.084 32.374 0 38 14 3 0 0 0 0.0082661 2 16785 16785;16899 92.491 62.267 1 5486300 40712 2879 27157 27767 47755;47756 47755 500 -0.06207318531119199 MPNSPAPHF 9 Oxidation (M) _M(Oxidation (M))PNSPAPHF_ M(1)PNSPAPHF M(59)PNSPAPHF 0 0 1 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2299194335938 2 507.229102 1012.44365 -0.40602 -0.00020595 0.41276 0.00020936 0.0067354 3.4164E-06 507.22927778264506 32.254 0.59114 32.125 31.675 32.266 -0.12915 37 23 3 0 0 0 0.024882 1 16775 16775 58.679 35.53 1 2227300 40713 2879 27157 27767 47757 47757 500 -0.06207318531119199 MPNSPAPHF 9 Unmodified _MPNSPAPHF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2306823730469 2 499.231645 996.448736 -0.17729 -8.8507E-05 -0.3793 -0.00018936 -0.55658 -0.00027786 499.2314973908538 39.332 0.24616 39.045 38.961 39.207 -0.28687 16 11 2 0 0 0 0.012148 1 20755 20755 74.423 56.288 1 1794300 40714 2879 27157 27768 47758 47758 -0.04963014668510368 MPNSPAPHF 9 Unmodified _MPNSPAPHF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2320861816406 2 499.231645 996.448736 0.68329 0.00034112 -0.18698 -9.3348E-05 0.49631 0.00024777 499.2314356237685 44.301 0.47295 39.449 39.215 39.688 -4.852 81 33 3 0 0 0 0.0071894 2 26937 26937;27078 111.29 79.17 1 39104000 40715 2879 27157 27768 47759;47760 47759 -0.04963014668510368 MPNVKVAVF 9 Oxidation (M) _M(Oxidation (M))PNVKVAVF_ M(1)PNVKVAVF M(85)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7810668945312 2 510.78097 1019.54739 0.66364 0.00033897 -0.92101 -0.00047044 -0.25738 -0.00013146 510.78072766938635 50.516 0.5678 50.102 49.87 50.438 -0.41351 93 27 5 0 0 0 0.0090948 2 27228 27131;27228 85.272 67.137 1 53182000 40716 230;10107 27158 27769 47761;47762 47762 18 0.038395885765453386 MPNVKVAVF 9 Oxidation (M) _M(Oxidation (M))PNVKVAVF_ M(1)PNVKVAVF M(57)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.78125 2 510.78097 1019.54739 -0.025239 -1.2892E-05 0.48886 0.0002497 0.46362 0.00023681 510.7813572293469 51.1 0.53424 50.687 50.415 50.949 -0.41351 109 26 5 0 0 0 0.026094 2 27561 27463;27561 57.471 41.624 1 52972000 40717 230;10107 27158 27769 47763;47764 47764 18 0.038395885765453386 MPNVKVAVF 9 Oxidation (M) _M(Oxidation (M))PNVKVAVF_ M(1)PNVKVAVF M(68)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7811584472656 2 510.78097 1019.54739 0.90844 0.00046401 -0.52054 -0.00026588 0.3879 0.00019813 510.78086980891567 50.784 0.57716 50.73 50.449 51.026 -0.053871 76 28 4 0 0 0 0.015445 3 27376 27376;27475;27575 68.081 46.334 1 29635000 40718 230;10107 27158 27769 47765;47766;47767 47765 18 0.038395885765453386 MPNVKVAVF 9 Oxidation (M) _M(Oxidation (M))PNVKVAVF_ M(1)PNVKVAVF M(59)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7816772460938 2 510.78097 1019.54739 NaN NaN NaN NaN NaN NaN NaN 50.232 1 50.183 49.683 50.683 -0.048824 0 0 0 0.047623 1 27161 27161 58.679 39.422 1 40719 230;10107 27158 27769 47768 47768 18 0.038395885765453386 MPNVKVAVF 9 Oxidation (M) _M(Oxidation (M))PNVKVAVF_ M(1)PNVKVAVF M(82)PNVKVAVF 0 0 1 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7817077636719 2 510.78097 1019.54739 0.52424 0.00026777 0.3596 0.00018368 0.88384 0.00045145 510.7810537299407 55.824 0.45394 49.903 49.587 50.041 -5.9211 80 26 4 0 0 0 0.0095811 2 35569 35439;35569 81.613 58.465 1 98112000 40720 230;10107 27158 27769 47769;47770 47770 18 0.038395885765453386 MPNVKVAVF 9 Unmodified _MPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2847900390625 2 502.783513 1003.55247 0.34648 0.0001742 -0.36056 -0.00018129 -0.014088 -7.0832E-06 502.7834678231546 60.575 0.30112 60.532 60.371 60.672 -0.04351 36 14 3 0 0 0 0.024882 2 33010 33010;33118 58.679 40.544 1 34486000 40721 230;10107 27158 27770 47771;47772 47771 0.05083892439165538 MPNVKVAVF 9 Unmodified _MPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.783447265625 2 502.783513 1003.55247 0.68189 0.00034284 -0.62046 -0.00031196 0.061427 3.0885E-05 502.78332402904823 66.396 0.85057 60.22 59.898 60.748 -6.1757 174 48 5 0 0 0 0.011968 4 43267 43011;43146;43267;43389 74.929 51.781 1 315060000 40722 230;10107 27158 27770 47773;47774;47775;47776 47775 0.05083892439165538 MPNVKVAVF 9 Unmodified _MPNVKVAVF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;DDX39B-ETV7|5|fusion;DDX39B-ETV7|4|fusion;DDX39B-ETV7|2|fusion;ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B DDX39B-ETV7|3|fusion;ENSG00000198563|ENST00000396172|DDX39B DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7832641601562 2 502.783513 1003.55247 0.81672 0.00041063 0.25129 0.00012634 1.068 0.00053697 502.7835678706444 67.112 0.55703 60.936 60.698 61.255 -6.1757 72 30 3 0 0 0 0.024882 1 43742 43742 58.679 36.932 1 70841000 40723 230;10107 27158 27770 47777 47777 0.05083892439165538 MPNYRGRQY 9 Unmodified _MPNYRGRQY_ 0 0 0 ENSG00000168582|ENST00000304502|CRYGA;ENSG00000182187|ENST00000260988|CRYGB ENSG00000168582|ENST00000304502|CRYGA ENSG00000168582|ENST00000304502|CRYGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2876586914062 2 592.785107 1183.55566 0.454 0.00026913 -0.076591 -4.5402E-05 0.37741 0.00022372 593.2862784407515 43.19 0.3218 38.425 38.243 38.565 -4.7648 49 22 3 0 0 0 0.2143 1 26155 26155 21.747 4.304 1 16633000 40724 7782 27159 27771 47778 47778 -0.02877464454127221 MPPDYISHF 9 Oxidation (M) _M(Oxidation (M))PPDYISHF_ M(1)PPDYISHF M(64)PPDYISHF 0 0 1 ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7495727539062 2 561.749867 1121.48518 0.6792 0.00038154 0.12991 7.2978E-05 0.80911 0.00045452 561.749878303571 49.38 0.31593 49.38 49.194 49.51 0 28 14 3 0 0 0 0.019303 1 27191 27191 64.236 42.49 1 2464000 40725 2649 27160 27772 47779 47779 457 -0.07070182562483751 MPPFTKMF 8 Unmodified _MPPFTKMF_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;ENST00000475277.1_1_1:235876468-235887465:-|nuORF;ENST00000473037.5_1_1:235826242-235897989:-|nuORF ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7415161132812 2 499.745542 997.476531 1.0008 0.00050013 -3.4571 -0.0017277 -2.4563 -0.0012275 499.743180484798 39.431 0.23088 34.98 34.766 34.997 -4.4509 16 13 2 0 0 0 0.23628 1 23354 23354 64.236 0.67347 1 8781100 40726 5543 27161 27773 47780 47780 -0.022308277326146708 MPPLFHTHY 9 Oxidation (M) _M(Oxidation (M))PPLFHTHY_ M(1)PPLFHTHY M(44)PPLFHTHY 0 0 1 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000505571.5_1_5:78915459-78919324:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.851318359375 3 386.851543 1157.5328 -0.31497 -0.00012185 0.41677 0.00016123 0.10179 3.9379E-05 386.85178883659194 36.889 0.39264 36.64 36.45 36.843 -0.2497 55 17 4 0 0 0 0.05483 1 19303 19303 43.772 39.056 1 11291000 40727 7182 27162 27774 47781 47781 1245 -0.039664835716166635 MPPLFHTHY 9 Unmodified _MPPLFHTHY_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000505571.5_1_5:78915459-78919324:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5203247070312 3 381.519905 1141.53789 0.89 0.00033955 -0.50241 -0.00019168 0.38759 0.00014787 381.51991015508645 47.162 0.32164 47.129 47.069 47.39 -0.033421 34 15 3 0 0 0 0.070838 1 25400 25400 36.506 27.761 1 3794400 40728 7182 27162 27775 47782 47782 -0.027221797089850952 MPPPANLPSL 10 Oxidation (M) _M(Oxidation (M))PPPANLPSL_ M(1)PPPANLPSL M(74)PPPANLPSL 0 0 1 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A;nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B nc|ENSG00000117523|Q9Y520-3|PRRC2C;PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7747192382812 2 526.775885 1051.53722 0.14618 7.7006E-05 -1.3123 -0.00069127 -1.1661 -0.00061426 526.7753938706581 59.817 0.81819 59.326 58.968 59.786 -0.49079 65 40 2 0 0 0 0.021369 1 32564 32564 74.423 28.402 1 3625200 40729 3315;10288;16627 27163 27776 47783 47783 591 0.013509808512935706 MPPQNVGEVY 10 Oxidation (M) _M(Oxidation (M))PPQNVGEVY_ M(1)PPQNVGEVY M(85)PPQNVGEVY 0 0 1 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2657470703125 2 575.265881 1148.51721 0.35032 0.00020153 0.21393 0.00012307 0.56425 0.0003246 575.2661203751153 37.516 1.1297 37.516 37.018 38.148 0 142 57 3 0 0 0 0.01132 5 19944 19825;19944;20061;20169;20277 85.272 61.251 1 10544000 40730 617 27164 27777 47784;47785;47786;47787;47788 47785 92 -0.051108148792991415 MPPQNVGEVY 10 Unmodified _MPPQNVGEVY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MSMS AL20221201_MKP_PDAC_01 4 567.2696533203125 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 52.337 1 46.603 46.103 47.103 -5.7345 0 0 0 0.3465 1 33036 33036 34.402 12.655 1 40731 617 27164 27778 47789 47789 -0.038665110166903105 MPPQNVGEVY 10 Unmodified _MPPQNVGEVY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MSMS AL20221201_MKP_PDAC_01 4 567.2694091796875 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 52.531 1 46.796 46.296 47.296 -5.7345 0 0 0 0.21708 1 33161 33161 41.84 15.571 1 40732 617 27164 27778 47790 47790 -0.038665110166903105 MPPQNVGEVY 10 Unmodified _MPPQNVGEVY_ 0 0 0 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 ENSG00000035687|ENST00000366535|ADSS2 MSMS AL20221201_MKP_PDAC_01 4 567.2691040039062 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 52.792 1 47.058 46.558 47.558 -5.7345 0 0 0 0.0192 1 33333 33333 65.235 25.285 1 40733 617 27164 27778 47791 47791 -0.038665110166903105 MPPQSPANIYY 11 Oxidation (M) _M(Oxidation (M))PPQSPANIYY_ M(1)PPQSPANIYY M(50)PPQSPANIYY 0 0 1 ENSG00000090776|ENST00000204961|EFNB1;ENSG00000125266|ENST00000646441|EFNB2 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.8046875 2 648.800088 1295.58562 0.69952 0.00045385 0.98964 0.00064208 1.6892 0.0010959 648.8012036459211 49.774 0.67512 49.381 49.057 49.732 -0.3923 75 33 3 0 0 0 0.056186 2 26803 26692;26803 49.554 24.155 1 4492500 40734 1568 27165 27779 47792;47793 47793 265 -0.05034570299449115 MPPQSPANIYY 11 Oxidation (M) _M(Oxidation (M))PPQSPANIYY_ M(1)PPQSPANIYY M(53)PPQSPANIYY 0 0 1 ENSG00000090776|ENST00000204961|EFNB1;ENSG00000125266|ENST00000646441|EFNB2 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.79931640625 2 648.800088 1295.58562 0.43512 0.00028231 -1.4566 -0.00094503 -1.0215 -0.00066272 648.7993027376014 56.282 0.59248 50.305 49.969 50.561 -5.9769 49 34 2 0 0 0 0.038431 1 35899 35899 53.404 30.668 1 20472000 40735 1568 27165 27779 47794 47794 265 -0.05034570299449115 MPPQSPANIYY 11 Unmodified _MPPQSPANIYY_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1;ENSG00000125266|ENST00000646441|EFNB2 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8031616210938 2 640.802631 1279.59071 1.6541 0.0010599 -0.22561 -0.00014457 1.4284 0.00091535 640.8025599398959 62.676 0.80752 56.501 56.156 56.964 -6.1757 104 41 3 0 0 0 0.012958 4 40579 40313;40447;40579;40722 74.2 45.118 1 30403000 40736 1568 27165 27780 47795;47796;47797;47798 47797 -0.037902664368175465 MPPYYLGPL 9 Unmodified _MPPYYLGPL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2725830078125 2 525.770071 1049.52559 0.45616 0.00023984 2.7316 0.0014362 3.1878 0.001676 526.2726628121547 88.9 0.061989 88.9 88.874 88.936 0 8 5 2 0 0 0 0.58466 1 49209 49209 2.3027 0 1 190910 40737 2065 27166 27781 47799 47799 0.0028078382797502854 MPQEERLSRY 10 Unmodified _MPQEERLSRY_ 0 0 0 ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000474961.5_1_6:31498213-31499248:-|nuORF;ENST00000462256.5_1_6:31498213-31500844:-|nuORF ENSG00000198563|ENST00000396172|DDX39B ENSG00000198563|ENST00000396172|DDX39B MSMS AL20221201_MKP_PDAC_01 4 436.8833312988281 3 436.883683 1307.62922 NaN NaN NaN NaN NaN NaN NaN 29.535 1 26.233 25.733 26.733 -3.3016 0 0 0 0.55063 1 16607 16607 16.275 5.3756 1 40738 10107 27167 27782 47800 47800 -0.012289608023138499 MPQFMKHLHY 10 Unmodified _MPQFMKHLHY_ 0 0 0 ENST00000539788.5_1_11:114314891-114320694:+|nuORF;ENST00000538791.3_1_11:114315223-114320694:+|nuORF;ENST00000543131.5_1_11:114310234-114320694:+|nuORF;ENST00000538403.5_1_11:114314877-114320694:+|nuORF;nc|ENSG00000076043|Q9Y3B8-2|REXO2;nc|ENSG00000076043|Q9Y3B8-3|REXO2;ENSG00000076043|ENST00000265881|REXO2;ENST00000539333.5_1_11:114316741-114316810:+|nuORF ENST00000539788.5_1_11:114314891-114320694:+|nuORF ENST00000539788.5_1_11:114314891-114320694:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.5513610839844 3 444.551099 1330.63147 1.08 0.00048011 1.11 0.00049345 2.19 0.00097356 444.551162212302 83.886 0.42297 77.71 77.487 77.91 -6.1757 51 21 3 0 0 0 0.074936 2 55145 55145;55270 43.982 31.807 1 11627000 40739 1178 27168 27783 47801;47802 47801 -0.020622035981887166 MPQFSTIEY 9 Oxidation (M) _M(Oxidation (M))PQFSTIEY_ M(1)PQFSTIEY M(50)PQFSTIEY 0 0 1 ENSG00000101310|ENST00000650089|SEC23B;ENST00000494645.1_1_20:18496323-18496401:+|nuORF ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2592163085938 2 566.254982 1130.49541 1.0492 0.00059413 0.44685 0.00025303 1.4961 0.00084717 566.2549528946491 54.513 0.38959 54.513 54.352 54.741 0 52 16 4 0 0 0 0.039985 2 30227 30227;30333 49.933 25.912 1 12622000 40740 1943 27169 27784 47803;47804 47803 330 -0.06461619627862092 MPQFSTIEY 9 Oxidation (M) _M(Oxidation (M))PQFSTIEY_ M(1)PQFSTIEY M(50)PQFSTIEY 0 0 1 ENSG00000101310|ENST00000650089|SEC23B;ENST00000494645.1_1_20:18496323-18496401:+|nuORF ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2561645507812 2 566.254982 1130.49541 0.20849 0.00011806 0.5751 0.00032565 0.78359 0.00044371 566.2553977710779 55.063 0.31774 55.063 54.876 55.193 0 45 13 5 0 0 0 0.039985 2 30528 30528;30626 49.933 30.676 1 12129000 40741 1943 27169 27784 47805;47806 47805 330 -0.06461619627862092 MPQFSTIEY 9 Oxidation (M) _M(Oxidation (M))PQFSTIEY_ M(1)PQFSTIEY M(44)PQFSTIEY 0 0 1 ENSG00000101310|ENST00000650089|SEC23B;ENST00000494645.1_1_20:18496323-18496401:+|nuORF ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2560424804688 2 566.254982 1130.49541 0.29872 0.00016915 -1.2529 -0.00070945 -0.95416 -0.0005403 566.2543637275263 55.778 0.31015 55.3 55.091 55.401 -0.47798 42 14 4 0 0 0 0.05447 1 30205 30205 43.858 15.371 1 6247400 40742 1943 27169 27784 47807 47807 330 -0.06461619627862092 MPQFSTIEY 9 Unmodified _MPQFSTIEY_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B;ENST00000494645.1_1_20:18496323-18496401:+|nuORF ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.258056640625 2 558.257525 1114.5005 0.37222 0.00020779 0.58181 0.0003248 0.95403 0.00053259 558.2576205683441 66.464 0.37282 65.981 65.821 66.194 -0.48323 29 17 2 0 0 0 0.19127 1 36252 36252 24.021 9.1823 1 4790200 40743 1943 27169 27785 47808 47808 -0.05217315765253261 MPQGGGQHY 9 Unmodified _MPQGGGQHY_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18 ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7113647460938 2 487.711076 973.4076 -0.40882 -0.00019939 0.91146 0.00044453 0.50264 0.00024514 487.7115271171748 17.47 0.36181 17.47 17.256 17.618 0 111 65 2 0 0 0 0.32871 1 8577 8577 15.847 7.937 1 1089900 40744 5321 27170 27786 47809 47809 -0.08016775707972101 MPQGGGQHY 9 Unmodified _MPQGGGQHY_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18 ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7117919921875 2 487.711076 973.4076 0.75992 0.00037062 0.0048017 2.3419E-06 0.76472 0.00037296 487.71121517974643 18.637 0.35577 16.015 15.802 16.158 -2.6215 94 36 3 0 0 0 0.013323 2 9844 9740;9844 71.134 54.191 1 12221000 40745 5321 27170 27786 47810;47811 47811 -0.08016775707972101 MPQGLVISF 9 Unmodified _MPQGLVISF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1 ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7683410644531 2 496.267696 990.520839 1.3515 0.00067072 0.48537 0.00024087 1.8369 0.00091159 496.268227984514 96.749 0.87682 90.573 90.069 90.946 -6.1757 68 51 2 0 0 0 0.05447 3 63951 63823;63951;64206 43.858 7.6518 1 20456000 40746 7898 27171 27787 47812;47813;47814 47813 0.025198996852054734 MPQGRRVIF 9 Unmodified _MPQGRRVIF_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6;ENST00000514312.1_1_5:10415712-10417549:+|nuORF;ENST00000505253.1_1_5:10413496-10422048:+|nuORF ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5434265136719 3 368.542933 1102.60697 1.4928 0.00055017 0.96226 0.00035463 2.4551 0.0009048 368.5430601343615 39.299 0.45761 34.848 34.616 35.073 -4.4509 45 28 2 0 0 0 0.49272 1 23341 23341 8.1555 3.966 1 17776000 40747 5701 27172 27788 47815 47815 0.05976904310568898 MPQHIMAILHY 11 2 Oxidation (M) _M(Oxidation (M))PQHIM(Oxidation (M))AILHY_ M(1)PQHIM(1)AILHY M(41)PQHIM(41)AILHY 0 0 2 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.89599609375 3 462.561664 1384.66316 -0.0035846 -1.6581E-06 0.38766 0.00017932 0.38408 0.00017766 462.5621678876801 43.578 0.1319 43.268 43.185 43.317 -0.31039 9 5 2 0 0 0 0.11513 1 23195 23195 40.725 32.78 1 9089000 40748 7333 27173 27789 47816 47816 1265;1266 -0.013782556348814978 MPQHIMAILHY 11 2 Oxidation (M) _M(Oxidation (M))PQHIM(Oxidation (M))AILHY_ M(1)PQHIM(1)AILHY M(44)PQHIM(44)AILHY 0 0 2 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.5614929199219 3 462.561664 1384.66316 0.59422 0.00027486 -0.42915 -0.00019851 0.16507 7.6353E-05 462.5617456103299 43.189 0.22825 43.173 43.083 43.311 -0.015667 30 10 4 0 0 0 0.08701 1 23147 23147 43.982 41.547 1 13637000 40749 7333 27173 27789 47817 47817 1265;1266 -0.013782556348814978 MPQHIMAILHY 11 Unmodified _MPQHIMAILHY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2340087890625 3 451.898388 1352.67333 1.2577 0.00056835 -0.092212 -4.167E-05 1.1655 0.00052668 451.8984774470822 89.736 0.36282 83.56 83.376 83.739 -6.1757 43 19 3 0 0 0 0.043669 2 59185 59185;59350 40.725 32.281 1 17875000 40750 7333 27173 27790 47818;47819 47818 0.011103520903361641 MPQKERESI 9 Unmodified _MPQKERESI_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2872924804688 2 559.287148 1116.55974 0.78983 0.00044174 -1.6489 -0.00092223 -0.85912 -0.00048049 559.2863649645334 18.134 0.25246 15.513 15.341 15.594 -2.6215 37 20 2 0 0 0 0.20428 1 9464 9464 22.736 6.8891 1 2855200 40751 5348 27174 27791 47820 47820 0.0061258024893504626 MPQKERESIM 10 Unmodified _MPQKERESIM_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8095092773438 2 624.80739 1247.60023 -0.23508 -0.00014688 0.89866 0.00056149 0.66358 0.00041461 624.80796299469 25.209 0.23175 22.326 22.282 22.514 -2.8831 24 14 2 0 0 0 0.087164 1 13784 13784 49.527 27.937 1 3137100 40752 5348 27175 27792 47821 47821 -0.013668214229483056 MPQKERESIM 10 Unmodified _MPQKERESIM_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78111144-78112096:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8739929199219 3 416.874019 1247.60023 0.26016 0.00010845 -1.5267 -0.00063642 -1.2665 -0.00052797 416.87355130640736 25.217 0.43094 22.334 22.175 22.606 -2.8831 122 34 5 0 0 0 0.30444 2 13813 13813;13936 29.281 17.65 1 27430000 40753 5348 27175 27792 47822;47823 47822 -0.013668214229483056 MPQLSEQWR 9 Unmodified _MPQLSEQWR_ 0 0 0 nc|ENSG00000175518|Q8IYU4-2|UBQLNL;ENSG00000175518|ENST00000380184|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL nc|ENSG00000175518|Q8IYU4-2|UBQLNL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1924438476562 3 392.193969 1173.56008 NaN NaN NaN NaN NaN NaN NaN 32.596 1 32.596 32.096 33.096 0 0 0 0 0.51965 1 17044 17044 15.248 11.929 1 40754 8523 27176 27793 47824 47824 -0.01976000031231706 MPQNKSTKF 9 Unmodified _MPQNKSTKF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8555908203125 3 360.855065 1079.54336 1.3276 0.00047907 0.8902 0.00032123 2.2178 0.0008003 360.8552921867068 18.257 0.26444 15.635 15.512 15.776 -2.6215 33 21 2 0 0 0 0.32235 1 9608 9608 11.518 1.9739 1 2850600 40755 5256;5714 27177 27794 47825 47825 0.006774990828262162 MPQPIPLSF 9 Unmodified _MPQPIPLSF_ 0 0 0 ENST00000411832.5_1_7:72952271-72957931:-|nuORF;ENST00000481667.1_1_7:72954286-72958015:-|nuORF ENST00000411832.5_1_7:72952271-72957931:-|nuORF ENST00000411832.5_1_7:72952271-72957931:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2747192382812 2 515.275521 1028.53649 1.157 0.00059616 -1.2365 -0.00063716 -0.079582 -4.1007E-05 515.2753620647403 96.258 0.34425 90.083 89.96 90.305 -6.1757 26 20 2 0 0 0 0.07916 1 63780 63780 37.974 0 1 8789400 40756 12979 27178 27795 47826 47826 0.02336186202251156 MPQPVNPQ 8 Oxidation (M) _M(Oxidation (M))PQPVNPQ_ M(1)PQPVNPQ M(44)PQPVNPQ 0 0 1 ENSG00000214414|ENST00000398290|TRIM77 ENSG00000214414|ENST00000398290|TRIM77 ENSG00000214414|ENST00000398290|TRIM77 MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.4404907226562 1 926.440028 925.432752 0.08119 7.5218E-05 0.27301 0.00025293 0.3542 0.00032814 926.4400203694188 98.813 0.39986 92.638 92.478 92.878 -6.1757 64 28 3 0 0 0 0.40035 1 65678 65678 44.407 8.3628 1 148420000 40757 10492 27179 27796 47827 47827 1697 -0.032947209053986626 MPQSYPSSSAM 11 Unmodified _MPQSYPSSSAM_ 0 0 0 REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B MSMS AL20221201_MKP_PDAC_01 4 593.2503662109375 2 593.249374 1184.4842 NaN NaN NaN NaN NaN NaN NaN 49.681 1 44.142 43.642 44.642 -5.5391 0 0 0 0.76159 1 31063 31063 13.906 4.5229 1 + 40758 17252 27180 27797 47828 47828 -0.10066764993666766 MPQVAPDLY 9 Unmodified _MPQVAPDLY_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.758544921875 2 517.254785 1032.49502 0.99185 0.00051304 0.43482 0.00022491 1.4267 0.00073795 517.2544915011956 69.164 0.366 62.988 62.705 63.071 -6.1757 35 20 3 0 0 0 0.28023 1 45070 45070 18.146 2.2992 1 31076000 40759 5783 27181 27798 47829 47829 -0.01992994557053862 MPRDDIFVY 9 Unmodified _MPRDDIFVY_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.278564453125 2 578.278792 1154.54303 -0.061679 -3.5668E-05 0.6018 0.00034801 0.54012 0.00031234 578.2790271715021 60.65 0.18095 60.16 60.089 60.269 -0.48932 14 8 2 0 0 0 0.34134 1 33055 33055 15.248 1.3424 1 3168400 40760 3029 27182 27799 47830 47830 -0.028059206370244283 MPRDIYQDY 9 Unmodified _MPRDIYQDY_ 0 0 0 ENSG00000186416|ENST00000688521|NKRF;nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENST00000487600.1_1_X:118722411-118725114:-|nuORF ENSG00000186416|ENST00000688521|NKRF ENSG00000186416|ENST00000688521|NKRF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7701416015625 2 600.771331 1199.52811 0.080139 4.8145E-05 1.1765 0.00070681 1.2567 0.00075496 600.7714437599218 45.708 0.38642 40.753 40.582 40.969 -4.9549 43 25 2 0 0 0 0.069655 1 28056 28056 40.239 16.219 1 14061000 40761 9474 27183 27800 47831 47831 -0.06367412505028369 MPRECIRHF 9 Carbamidomethyl (C) _MPREC(Carbamidomethyl (C))IRHF_ MPREC(1)IRHF MPREC(44)IRHF 0 1 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.8715209960938 3 415.870832 1244.59067 0.72823 0.00030285 -0.065197 -2.7114E-05 0.66304 0.00027574 415.871108701304 26.538 0.60442 23.587 23.374 23.979 -2.9511 98 31 5 0 0 0 0.052231 1 14556 14556 44.392 32.874 1 186810000 40762 6889 27184 27801 47832 47832 678 -0.02184544917849962 MPREFGWISFS 11 Unmodified _MPREFGWISFS_ 0 0 0 REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.3231201171875 2 678.823898 1355.63324 -0.53324 -0.00036197 -1.6211 -0.0011004 -2.1543 -0.0014624 678.8227001311375 29.576 0.17406 29.576 29.528 29.702 0 23 12 2 0 0 0 0.53952 1 15331 15331 14.405 2.1647 1 4198100 + 40763 28171 27185 27802 47833 47833 -0.030348713085913914 MPREFGWISFS 11 Unmodified _MPREFGWISFS_ 0 0 0 REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.32421875 2 678.823898 1355.63324 1.5852 0.0010761 -1.0341 -0.00070197 0.55108 0.00037409 678.8231865583448 33.901 0.60984 29.916 29.589 30.199 -3.9853 116 33 5 0 0 0 0.24216 1 19324 19324 29.841 6.0508 1 178660000 + 40764 28171 27185 27802 47834 47834 -0.030348713085913914 MPREFGWISFS 11 Unmodified _MPREFGWISFS_ 0 0 0 REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 678.823898 1355.63324 -0.53324 -0.00036197 -1.6211 -0.0011004 -2.1543 -0.0014624 678.8227001311375 29.576 0.17406 29.576 29.528 29.702 0 -0.090684 -0.00048441 NaN 29.841 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4198100 + 40765 28171 27185 27802 -0.030348713085913914 MPREFGWISFS 11 Unmodified _MPREFGWISFS_ 0 0 0 REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF REV__ENST00000512874.1_1_4:186392695-186393388:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 678.823898 1355.63324 0.61301 0.00041613 -1.5215 -0.0010328 -0.9085 -0.00061671 678.8228491090136 29.589 0.23742 29.509 29.386 29.624 -0.080431 -0.15829 -0.0003492 NaN 29.841 32 11 4 NaN NaN NaN NaN 0 NaN NaN 0 33166000 + 40766 28171 27185 27802 -0.030348713085913914 MPRGKFLVVF 10 Unmodified _MPRGKFLVVF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5678405761719 3 398.566967 1192.67907 1.1914 0.00047485 0.56861 0.00022663 1.76 0.00070147 398.5670397430582 95.149 0.48487 88.973 88.711 89.195 -6.1757 51 26 3 0 0 0 0.54684 2 62979 62979;63099 8.4443 2.0831 1 8968500 40767 10367 27186 27803 47835;47836 47835 0.09043818664281389 MPRGVVVTL 9 Oxidation (M) _M(Oxidation (M))PRGVVVTL_ M(1)PRGVVVTL M(55)PRGVVVTL 0 0 1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2869873046875 2 494.28642 986.558287 0.78715 0.00038908 -0.36883 -0.00018231 0.41832 0.00020677 494.2863367638962 47.691 0.28545 47.338 47.145 47.431 -0.3526 43 13 4 0 0 0 0.031062 1 25515 25515 54.774 10.915 1 40650000 40768 1608 27187 27804 47837 47837 269 0.06446990950826148 MPRGVVVTL 9 Oxidation (M) _M(Oxidation (M))PRGVVVTL_ M(1)PRGVVVTL M(46)PRGVVVTL 0 0 1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2870178222656 2 494.28642 986.558287 0.97599 0.00048242 0.3068 0.00015165 1.2828 0.00063406 494.2865845800374 47.398 0.25792 47.359 47.177 47.435 -0.038643 21 11 2 0 0 0 0.047196 1 25512 25512 46.021 9.5548 1 11433000 40769 1608 27187 27804 47838 47838 269 0.06446990950826148 MPRGVVVTL 9 Oxidation (M) _M(Oxidation (M))PRGVVVTL_ M(1)PRGVVVTL M(46)PRGVVVTL 0 0 1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2865295410156 2 494.28642 986.558287 0.78039 0.00038573 -0.34244 -0.00016927 0.43794 0.00021647 494.2862281572726 47.589 0.28913 47.551 47.411 47.7 -0.038643 23 13 2 0 0 0 0.047196 1 25614 25614 46.021 9.8939 1 15560000 40770 1608 27187 27804 47839 47839 269 0.06446990950826148 MPRGVVVTL 9 Unmodified _MPRGVVVTL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.28955078125 2 486.288963 970.563372 0.26518 0.00012895 0.12555 6.1052E-05 0.39072 0.00019001 486.2890664111031 55.32 0.33873 55.251 55.057 55.395 -0.068741 38 16 3 0 0 0 0.10734 1 30124 30124 32.305 15.363 1 7212000 40771 1608 27187 27805 47840 47840 0.07691294813446348 MPRGVVVTL 9 Unmodified _MPRGVVVTL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2901306152344 2 486.288963 970.563372 1.1173 0.00054332 -0.26906 -0.00013084 0.84823 0.00041249 486.28893575838447 61.024 0.62644 54.877 54.63 55.256 -6.1478 80 32 3 0 0 0 0.010818 3 39188 39188;39310;39436 78.149 24.574 1 168450000 40772 1608 27187 27805 47841;47842;47843 47841 0.07691294813446348 MPRGVVVTL 9 Unmodified _MPRGVVVTL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.288963 970.563372 0.43784 0.00021292 0.236 0.00011477 0.67384 0.00032768 486.28904389056504 55.64 0.18843 55.162 55.091 55.279 -0.47798 0.06567 0.00029514 NaN 78.149 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1020900 40773 1608 27187 27805 0.07691294813446348 MPRHFATKL 9 Unmodified _MPRHFATKL_ 0 0 0 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5397644042969 3 367.5393 1099.59607 1.1537 0.00042404 0.91381 0.00033586 2.0675 0.0007599 367.5394547646936 28.161 0.76398 25.013 24.77 25.534 -3.1482 100 40 4 0 0 0 0.080011 1 15707 15707 37.771 16.181 1 63874000 40774 6588 27188 27806 47844 47844 0.05025501936302135 MPRHFATKL 9 Unmodified _MPRHFATKL_ 0 0 0 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 ENSG00000158470|ENST00000371711|B4GALT5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.7413940429688 2 550.805311 1099.59607 0.48124 0.00026507 0.70148 0.00038638 1.1827 0.00065145 550.8058162821286 28.169 0.12342 25.021 24.935 25.059 -3.1482 9 6 2 0 0 0 0.15672 1 15684 15684 20.454 0 1 2276400 40775 6588 27188 27806 47845 47845 0.05025501936302135 MPRITRMNI 9 Unmodified _MPRITRMNI_ 0 0 0 REV__ENST00000479945.1_1_3:58414077-58415536:-|nuORF REV__ENST00000479945.1_1_3:58414077-58415536:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8772277832031 3 377.875694 1130.60525 1.638 0.00061897 0.62405 0.00023581 2.2621 0.00085478 377.87614176642364 20.477 0.21598 17.784 17.666 17.882 -2.693 15 10 2 0 0 0 0.38785 1 10931 10931 8.9762 0 1 1871100 + 40776 22301 27189 27807 47846 47846 0.04517527230291307 MPRKITEVL 9 Oxidation (M) _M(Oxidation (M))PRKITEVL_ M(1)PRKITEVL M(46)PRKITEVL 0 0 1 ENSG00000172432|ENST00000307126|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENST00000480263.1_1_6:43593048-43593564:-|nuORF ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.819091796875 2 551.818084 1101.62162 1.2077 0.00066645 1.2448 0.00068692 2.4526 0.0013534 551.8188600592301 37.489 0.62069 33.205 32.938 33.559 -4.2835 85 36 3 0 0 0 0.047788 1 22022 22022 45.7 18.071 1 21169000 40777 8217 27190 27808 47847 47847 1393 0.07486931668063335 MPRLEVQSF 9 Oxidation (M) _M(Oxidation (M))PRLEVQSF_ M(1)PRLEVQSF M(42)PRLEVQSF 0 0 1 ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7844848632812 2 561.784241 1121.55393 0.86458 0.00048571 -0.40434 -0.00022715 0.46023 0.00025855 561.784095154581 47.207 0.21689 46.854 46.722 46.938 -0.3526 23 10 3 0 0 0 0.062454 1 25294 25294 41.956 9.1699 1 4381100 40778 3079 27191 27809 47848 47848 534 -0.001985182627549875 MPRPGTMAL 9 Unmodified _MPRPGTMAL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2518310546875 2 487.251523 972.488493 1.113 0.00054231 0.36339 0.00017706 1.4764 0.00071937 487.25280059482395 50.421 0.50325 44.882 44.565 45.068 -5.5391 67 32 3 0 0 0 0.14 1 31713 31713 29.082 3.6823 1 15086000 40779 7922 27192 27810 47849 47849 0.0011478901055852475 MPRQPSATRL 10 Unmodified _MPRQPSATRL_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000410036.2_1_2:132241636-132250313:-|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2135314941406 3 386.213364 1155.61826 NaN NaN NaN NaN NaN NaN NaN 24.09 1 24.112 23.612 24.612 0.021185 0 0 0 0.80293 1 12421 12421 11.065 8.5668 1 40780 6161 27193 27811 47850 47850 0.0466768161404616 MPRQPSATRL 10 Unmodified _MPRQPSATRL_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000410036.2_1_2:132241636-132250313:-|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2137145996094 3 386.213364 1155.61826 0.885 0.0003418 -0.47841 -0.00018477 0.40659 0.00015703 386.21322291033897 27.184 0.38514 24.148 23.932 24.317 -3.0365 73 19 5 0 0 0 0.2667 2 15061 14950;15061 28.181 19.205 1 243000000 40781 6161 27193 27811 47851;47852 47852 0.0466768161404616 MPRQPSATRL 10 Unmodified _MPRQPSATRL_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000410036.2_1_2:132241636-132250313:-|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8160400390625 2 578.816407 1155.61826 0.51168 0.00029617 0.19781 0.0001145 0.70949 0.00041067 579.3186152285132 27.204 0.35087 24.168 23.966 24.317 -3.0365 34 17 3 0 0 0 0.014503 1 15006 15006 80.676 38.836 1 31134000 40782 6161 27193 27811 47853 47853 0.0466768161404616 MPRVQTQQY 9 Oxidation (M) _M(Oxidation (M))PRVQTQQY_ M(1)PRVQTQQY M(52)PRVQTQQY 0 0 1 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.7841186523438 2 583.784773 1165.55499 0.089374 5.2175E-05 -0.01036 -6.048E-06 0.079014 4.6127E-05 583.7848821742976 23.133 0.27597 20.354 20.203 20.479 -2.7784 43 26 3 0 0 0 0.036857 1 12466 12466 51.63 20.993 1 12422000 40783 5085 27194 27812 47854 47854 935 -0.02116303893831173 MPRVQTQQY 9 Unmodified _MPRVQTQQY_ 0 0 0 nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A nc|ENSG00000138674|O94979-6|SEC31A nc|ENSG00000138674|O94979-6|SEC31A MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7865600585938 2 575.787315 1149.56008 1.0941 0.00062999 -0.1067 -6.1439E-05 0.98744 0.00056855 575.7869960834576 32.232 0.43947 28.376 28.161 28.601 -3.8562 58 25 3 0 0 0 0.0099157 2 18276 18276;18403 78.728 55.58 1 74360000 40784 5085 27194 27813 47855;47856 47855 -0.00872000031222342 MPRYVPLL 8 Unmodified _MPRYVPLL_ 0 0 0 ENST00000565192.1_1_6:31022106-31024293:+|nuORF;nc|ENSG00000228789|E2RYF7|HCG22 ENST00000565192.1_1_6:31022106-31024293:+|nuORF ENST00000565192.1_1_6:31022106-31024293:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7872314453125 2 494.786056 987.557558 0.75543 0.00037378 -0.45563 -0.00022544 0.2998 0.00014834 494.78589620196806 69.848 0.34387 63.672 63.467 63.811 -6.1757 31 18 3 0 0 0 0.61462 1 45598 45598 24.674 3.8027 1 31906000 40785 15400 27195 27814 47857 47857 0.06328196301774369 MPSASMTRL 9 Unmodified _MPSASMTRL_ 0 0 0 nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4;ENST00000519278.5_1_8:134251123-134266883:-|nuORF;nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1 nc|ENSG00000103034|Q9ULP0-2|NDRG4;ENST00000519278.5_1_8:134251123-134266883:-|nuORF ENST00000519278.5_1_8:134251123-134266883:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2458190917969 2 497.246437 992.478322 0.49848 0.00024787 -0.21294 -0.00010589 0.28554 0.00014198 497.24617268529977 45.375 0.18005 40.42 40.375 40.555 -4.9549 16 11 2 0 0 0 0.025842 1 27845 27845 57.722 15.627 1 7512500 40786 2206;16095 27196 27815 47858 47858 -0.018218187146771925 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(93)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4598999023438 1 992.460489 991.453213 0.078172 7.7582E-05 -0.15729 -0.00015611 -0.079122 -7.8525E-05 992.4606090919432 50.218 0.31865 50.218 50.032 50.35 0 48 14 4 0 0 0 0.0082281 2 27707 27595;27707 92.822 44.476 1 22893000 40787 1001 27197 27816 47859;47860 47860 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(51)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7347106933594 2 496.733883 991.453213 0.32951 0.00016368 -0.28059 -0.00013938 0.048917 2.4299E-05 496.733914873938 50.248 0.38255 50.248 49.986 50.369 0 59 17 5 0 0 0 0.038285 1 27612 27612 50.855 18.55 1 36810000 40788 1001 27197 27816 47861 47861 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(82)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4608154296875 1 992.460489 991.453213 0.040631 4.0325E-05 1.7719 0.0017585 1.8125 0.0017988 992.4610013356081 50.475 0.37374 50.475 50.331 50.704 0 76 17 6 0 0 0 0.0095811 2 27808 27808;27920 81.613 41.656 1 43238000 40789 1001 27197 27816 47862;47863 47862 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(42)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7345275878906 2 496.733883 991.453213 0.29941 0.00014873 1.627 0.00080819 1.9264 0.00095691 496.7340919039414 50.485 0.35406 50.485 50.331 50.685 0 59 16 4 0 0 0 0.06187 1 27835 27835 42.095 16.695 1 50928000 40790 1001 27197 27816 47864 47864 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(42)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7339172363281 2 496.733883 991.453213 0.31058 0.00015428 -0.92473 -0.00045934 -0.61415 -0.00030507 496.73340133105626 58.005 0.32955 51.977 51.717 52.047 -6.0275 24 18 2 0 0 0 0.06187 1 37067 37067 42.095 20.348 1 27574000 40791 1001 27197 27816 47865 47865 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(51)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7344360351562 2 496.733883 991.453213 0.9137 0.00045387 0.098947 4.915E-05 1.0126 0.00050302 496.7336809928615 58.271 0.45727 52.197 52 52.457 -6.0745 44 24 2 0 0 0 0.038285 2 37259 37259;37384 50.855 23.971 1 33334000 40792 1001 27197 27816 47866;47867 47866 166 -0.04285595036253653 MPSEDVVSL 9 Oxidation (M) _M(Oxidation (M))PSEDVVSL_ M(1)PSEDVVSL M(85)PSEDVVSL 0 0 1 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 992.228515625 1 992.460489 991.453213 0.57299 0.00056867 0.027783 2.7573E-05 0.60077 0.00059624 992.4609317985805 58.243 0.58109 52.215 51.905 52.486 -6.0275 52 31 2 0 0 0 0.023861 1 37204 37204 85.272 43.177 1 23800000 40793 1001 27197 27816 47868 47868 166 -0.04285595036253653 MPSEDVVSL 9 Unmodified _MPSEDVVSL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.4657592773438 1 976.465574 975.458298 0.22017 0.00021499 -0.1382 -0.00013494 0.081978 8.0048E-05 976.465752260783 58.313 0.40815 58.313 58.103 58.511 0 47 15 4 0 0 0 0.0082281 2 32491 32386;32491 92.822 35.351 1 7078900 40794 1001 27197 27817 47869;47870 47870 -0.030412911736448223 MPSEDVVSL 9 Unmodified _MPSEDVVSL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7377624511719 2 488.736425 975.458298 0.30824 0.00015065 -0.075584 -3.6941E-05 0.23266 0.00011371 488.7366446337965 58.353 0.4318 58.353 58.103 58.535 0 35 16 3 0 0 0 0.026094 1 32466 32466 57.471 25.166 1 3995000 40795 1001 27197 27817 47871 47871 -0.030412911736448223 MPSEDVVSL 9 Unmodified _MPSEDVVSL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.4663696289062 1 976.465574 975.458298 0.29716 0.00029017 -0.24086 -0.00023519 0.056306 5.4981E-05 976.465727935066 66.488 0.63657 60.312 60.009 60.646 -6.1757 101 35 4 0 0 0 0.0090851 5 43466 43095;43147;43220;43342;43466 85.357 30.583 1 104120000 40796 1001 27197 27817 47872;47873;47874;47875;47876 47876 -0.030412911736448223 MPSEDVVSL 9 Unmodified _MPSEDVVSL_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.736572265625 2 488.736425 975.458298 0.52288 0.00025555 -0.3493 -0.00017072 0.17358 8.4837E-05 488.7365472703435 66.486 0.57227 60.31 60.027 60.599 -6.1757 75 31 3 0 0 0 0.0090851 2 43310 43174;43310 85.357 37.011 1 82517000 40797 1001 27197 27817 47877;47878 47878 -0.030412911736448223 MPSEQIRNQL 10 Oxidation (M) _M(Oxidation (M))PSEQIRNQL_ M(1)PSEQIRNQL M(69)PSEQIRNQL 0 0 1 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3087768554688 2 616.308612 1230.60267 NaN NaN NaN NaN NaN NaN NaN 29.738 1 29.738 29.238 30.238 0 0 0 0 0.014758 1 15415 15415 69.105 45.084 1 40798 2503 27198 27818 47879 47879 428 -0.0034064969365772413 MPSEQIRNQL 10 Unmodified _MPSEQIRNQL_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3117065429688 2 608.311155 1214.60776 1.2967 0.0007888 -0.84046 -0.00051126 0.45625 0.00027754 608.3107620883318 41.87 0.34988 37.262 37.062 37.412 -4.6079 50 21 3 0 0 0 7.1624E-07 2 25260 25119;25260 132.38 86.68 1 15241000 40799 2503 27198 27819 47880;47881 47881 0.009036541689738442 MPSGAYVY 8 Oxidation (M) _M(Oxidation (M))PSGAYVY_ M(1)PSGAYVY M(74)PSGAYVY 0 0 1 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73843478-73843967:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.3916015625 1 903.391681 902.384405 -0.013005 -1.1749E-05 0.15039 0.00013586 0.13738 0.00012411 903.391726633072 35.855 0.28354 35.855 35.674 35.957 0 24 13 2 0 0 0 0.18881 2 18914 18914;19023 74.396 54.957 1 3674500 40800 4413 27199 27820 47882;47883 47882 807 -0.07069214545299474 MPSGAYVY 8 Oxidation (M) _M(Oxidation (M))PSGAYVY_ M(1)PSGAYVY M(43)PSGAYVY 0 0 1 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;ENST00000587642.5_1_17:73843478-73843967:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.1990661621094 2 452.199479 902.384405 0.34771 0.00015723 1.2818 0.00057963 1.6295 0.00073686 452.19937344880873 35.813 0.28354 35.813 35.674 35.957 0 30 13 3 0 0 0 0.41521 1 18942 18942 42.968 22.097 1 3661000 40801 4413 27199 27820 47884 47884 807 -0.07069214545299474 MPSHPDRAY 9 Unmodified _MPSHPDRAY_ 0 0 0 nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12 nc|ENSG00000161955|O75888-5|TNFSF13 nc|ENSG00000161955|O75888-5|TNFSF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.4993286132812 3 358.499281 1072.47601 -0.51745 -0.00018551 0.5059 0.00018137 -0.011545 -4.1388E-06 358.4995004217282 18.226 0.17215 18.226 18.128 18.301 0 59 25 3 0 0 0 0.44883 1 9037 9037 10.315 7.32 1 1524300 40802 6819 27200 27821 47885 47885 -0.05732531128114715 MPSHPDRAY 9 Unmodified _MPSHPDRAY_ 0 0 0 nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12 nc|ENSG00000161955|O75888-5|TNFSF13 nc|ENSG00000161955|O75888-5|TNFSF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.4988403320312 3 358.499281 1072.47601 1.6981 0.00060878 -1.0785 -0.00038664 0.61963 0.00022214 358.4988868899394 19.537 0.34411 16.881 16.699 17.043 -2.6564 51 31 2 0 0 0 0.2546 1 10347 10347 14.218 2.7235 1 9543300 40803 6819 27200 27821 47886 47886 -0.05732531128114715 MPSHPDRAY 9 Unmodified _MPSHPDRAY_ 0 0 0 nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12 nc|ENSG00000161955|O75888-5|TNFSF13 nc|ENSG00000161955|O75888-5|TNFSF13 MSMS AL20221201_MKP_PDAC_01 4 537.2462768554688 2 537.245283 1072.47601 NaN NaN NaN NaN NaN NaN NaN 19.509 1 16.853 16.353 17.353 -2.6564 0 0 0 0.32622 1 10341 10341 23.79 11.258 1 40804 6819 27200 27821 47887 47887 -0.05732531128114715 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(110)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.284423828125 2 606.284271 1210.55399 0.2175 0.00013187 -0.31484 -0.00019088 -0.097344 -5.9018E-05 606.2841679307522 49.329 0.33496 49.329 49.152 49.487 0 52 15 5 0 0 0 0.0014571 2 27079 27079;27200 111.29 93.141 1 68400000 40805 6139 27201 27822 47888;47889 47888 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(100)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2845458984375 2 606.284271 1210.55399 0.30898 0.00018733 -0.74327 -0.00045063 -0.43429 -0.0002633 606.2841162183321 49.706 0.3961 49.706 49.487 49.883 0 69 17 5 0 0 0 0.0045909 2 27430 27320;27430 99.799 82.686 1 68102000 40806 6139 27201 27822 47890;47891 47891 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(79)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.2860107421875 2 606.284271 1210.55399 0.7774 0.00047133 2.1777 0.0013203 2.9551 0.0017917 606.286769146791 49.766 0.4933 49.374 49.057 49.55 -0.3923 45 24 3 0 0 0 0.016642 1 26763 26763 78.728 60.582 1 5670100 40807 6139 27201 27822 47892 47892 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(79)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.2833862304688 2 606.284271 1210.55399 0.82231 0.00049855 -1.078 -0.0006536 -0.25572 -0.00015504 606.2839367891456 50.198 0.3252 49.806 49.627 49.952 -0.3923 39 15 4 0 0 0 0.016642 1 26991 26991 78.728 53.329 1 7664200 40808 6139 27201 27822 47893 47893 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(89)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS AL20221201_MKP_PDAC_01 4 606.2839965820312 2 606.284271 1210.55399 NaN NaN NaN NaN NaN NaN NaN 56.818 1 50.841 50.341 51.341 -5.9769 0 0 0 0.028528 1 36289 36289 88.954 46.998 1 40809 6139 27201 27822 47894 47894 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ M(1)PSILQNETY M(120)PSILQNETY 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MSMS AL20221201_MKP_PDAC_01 4 606.2839965820312 2 606.284271 1210.55399 NaN NaN NaN NaN NaN NaN NaN 56.995 1 51.018 50.518 51.518 -5.9769 0 0 0 4.87E-06 1 36422 36422 118.07 95.332 1 40810 6139 27201 27822 47895 47895 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.284271 1210.55399 1.1364 0.000689 -0.24745 -0.00015003 0.88899 0.00053898 606.284251541614 49.823 0.20419 49.774 49.703 49.907 -0.048824 0.011831 0.00066187 NaN 99.799 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1012500 40811 6139 27201 27822 1094 -0.04286563053392456 MPSILQNETY 10 Oxidation (M) _M(Oxidation (M))PSILQNETY_ 0 0 1 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.284271 1210.55399 0.66221 0.00040149 -1.0649 -0.00064564 -0.40271 -0.00024415 606.2834946155399 49.403 0.18018 49.359 49.275 49.456 -0.04369 0.0053761 -0.00091488 NaN 111.29 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1040600 40812 6139 27201 27822 1094 -0.04286563053392456 MPSILQNETY 10 Unmodified _MPSILQNETY_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2865600585938 2 598.286814 1194.55907 0.025368 1.5177E-05 -0.094081 -5.6288E-05 -0.068713 -4.111E-05 598.2868332460945 61.523 0.45347 61.523 61.275 61.728 0 58 20 4 0 0 0 0.0045909 2 34341 34243;34341 99.799 82.857 1 6415800 40813 6139 27201 27823 47896;47897 47897 -0.030422591907608876 MPSILQNETY 10 Unmodified _MPSILQNETY_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2874145507812 2 598.286814 1194.55907 0.67376 0.0004031 0.4817 0.0002882 1.1555 0.0006913 598.286925248895 62.104 0.38293 61.616 61.426 61.809 -0.48764 58 17 6 0 0 0 0.016642 2 33889 33790;33889 78.728 60.593 1 9405500 40814 6139 27201 27823 47898;47899 47899 -0.030422591907608876 MPSILQNETY 10 Unmodified _MPSILQNETY_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.287353515625 2 598.286814 1194.55907 0.37122 0.0002221 0.025685 1.5367E-05 0.39691 0.00023746 598.2868068387926 69.259 0.57812 63.084 62.782 63.36 -6.1757 89 31 4 0 0 0 0.0093042 2 45250 45250;45379 88.954 70.819 1 209030000 40815 6139 27201 27823 47900;47901 47900 -0.030422591907608876 MPSKGSVTL 9 Unmodified _MPSKGSVTL_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.249755859375 2 460.249503 918.484453 0.9689 0.00044594 -0.16194 -7.4534E-05 0.80696 0.0003714 460.2496012537511 36.875 0.54566 32.592 32.311 32.857 -4.2835 80 33 3 0 0 0 0.032796 2 21458 21458;21580 53.833 24.322 1 40594000 40816 447 27202 27824 47902;47903 47902 0.02195022788521328 MPSKTELIV 9 Oxidation (M) _M(Oxidation (M))PSKTELIV_ M(1)PSKTELIV M(52)PSKTELIV 0 0 1 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4;ENST00000537634.1_1_12:6700611-6701611:-|nuORF nc|ENSG00000111642|Q14839-2|CHD4 nc|ENSG00000111642|Q14839-2|CHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2837524414062 2 517.283543 1032.55253 0.036292 1.8773E-05 -0.43179 -0.00022336 -0.3955 -0.00020459 517.2834984715686 40.44 0.40345 40.44 40.236 40.639 0 55 20 4 0 0 0 0.03568 1 21785 21785 52.268 8.4101 1 12100000 40817 2803 27203 27825 47904 47904 487 0.03755847648517374 MPSKVVILRY 10 Oxidation (M) _M(Oxidation (M))PSKVVILRY_ M(1)PSKVVILRY M(40)PSKVVILRY 0 0 1 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3544311523438 2 611.354834 1220.69511 0.60887 0.00037223 -0.32885 -0.00020105 0.28002 0.00017119 611.354726996776 40.765 0.22567 40.763 40.665 40.891 -0.0017929 24 10 3 0 0 0 0.14688 1 21744 21744 40.239 30.856 1 3508700 40818 3672 27204 27826 47905 47905 644 0.09359480110538243 MPSKVVILRY 10 Oxidation (M) _M(Oxidation (M))PSKVVILRY_ M(1)PSKVVILRY M(69)PSKVVILRY 0 0 1 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.3556518554688 2 611.354834 1220.69511 0.49045 0.00029984 0.58684 0.00035877 1.0773 0.00065861 611.856842708146 44.927 0.28343 40.075 39.918 40.202 -4.852 28 18 2 0 0 0 0.02847 1 27452 27452 68.76 52.611 1 9530200 40819 3672 27204 27826 47906 47906 644 0.09359480110538243 MPSKVVILRY 10 Unmodified _MPSKVVILRY_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.9085083007812 3 402.57401 1204.7002 0.95719 0.00038534 -1.4625 -0.00058876 -0.50528 -0.00020341 402.5736287254066 46.976 0.18272 46.942 46.814 46.996 -0.033417 27 8 4 0 0 0 0.26936 1 25276 25276 29.281 20.837 1 9607100 40820 3672 27204 27827 47907 47907 0.10603783973147074 MPSKVVILRY 10 Unmodified _MPSKVVILRY_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.57421875 3 402.57401 1204.7002 0.51642 0.0002079 -0.43742 -0.0001761 0.079 3.1803E-05 402.57377466477766 51.948 0.35985 46.213 46.019 46.378 -5.7345 42 24 2 0 0 0 0.44591 1 32663 32663 19.144 11.667 1 85801000 40821 3672 27204 27827 47908 47908 0.10603783973147074 MPSLQPVVM 9 Unmodified _MPSLQPVVM_ 0 0 0 nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB nc|ENSG00000188986|Q8WX92|NELFB nc|ENSG00000188986|Q8WX92|NELFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2613220214844 2 501.261556 1000.50856 1.5599 0.00078192 -2.1231 -0.0010642 -0.56316 -0.00028229 501.260627713807 79.47 0.33962 73.295 73.095 73.435 -6.1757 27 19 2 0 0 0 0.08691 1 52174 52174 36.127 7.6402 1 10525000 40822 9713 27205 27828 47909 47909 0.008325399505224595 MPSNSVQLAY 10 Oxidation (M) _M(Oxidation (M))PSNSVQLAY_ M(1)PSNSVQLAY M(66)PSNSVQLAY 0 0 1 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2660522460938 2 563.265881 1124.51721 -0.0006468 -3.6432E-07 0.25278 0.00014238 0.25213 0.00014202 563.2659874466862 44.425 0.11644 44.425 44.375 44.492 0 6 5 2 0 0 0 0.033218 1 24176 24176 66.457 34.151 1 7731200 40823 2488 27206 27829 47910 47910 423 -0.04006814879312515 MPSPATLSH 9 Oxidation (M) _M(Oxidation (M))PSPATLSH_ M(1)PSPATLSH M(46)PSPATLSH 0 0 1 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MSMS AL20221201_MKP_PDAC_01 4 478.7291259765625 2 478.728935 955.443317 NaN NaN NaN NaN NaN NaN NaN 24.22 1 21.393 20.893 21.893 -2.8273 0 0 0 0.08978 1 13170 13170 46.021 29.079 1 40824 3188 27207 27830 47911 47911 565 -0.036187382509638155 MPSPATLSH 9 Unmodified _MPSPATLSH_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MSMS AL20221201_MKP_PDAC_01 4 470.73291015625 2 470.731477 939.448402 NaN NaN NaN NaN NaN NaN NaN 36.913 1 32.629 32.129 33.129 -4.2835 0 0 0 0.035065 1 21605 21605 64.236 30.134 1 40825 3188 27207 27831 47912 47912 -0.023744343883549845 MPSPATLSH 9 Unmodified _MPSPATLSH_ 0 0 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MSMS AL20221201_MKP_PDAC_01 4 470.7320251464844 2 470.731477 939.448402 NaN NaN NaN NaN NaN NaN NaN 37.092 1 32.809 32.309 33.309 -4.2835 0 0 0 0.025979 1 21735 21735 71.134 37.031 1 40826 3188 27207 27831 47913 47913 -0.023744343883549845 MPSPIMHPLIL 11 Unmodified _MPSPIMHPLIL_ 0 0 0 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8458862304688 2 624.845787 1247.67702 1.1987 0.00074903 -1.8514 -0.0011569 -0.65271 -0.00040784 624.844135796311 98.114 0.15204 91.939 91.875 92.027 -6.1757 20 9 3 0 0 0 8.391E-09 1 65044 65044 111.29 75.16 1 25444000 40827 5122 27208 27832 47914 47914 0.0630902186419462 MPSPVSPKL 9 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ M(1)PSPVSPKL M(62)PSPVSPKL 0 0 1 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2656555175781 2 486.265153 970.515753 -0.39028 -0.00018978 0.51868 0.00025222 0.1284 6.2434E-05 486.26550689920185 34.817 0.38045 34.817 34.636 35.016 0 48 19 3 0 0 0 0.021948 2 18319 18319;18430 61.602 31.761 1 15725000 40828 1080 27209 27833 47915;47916 47915 179 0.029315958226106886 MPSPVSPKL 9 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ M(1)PSPVSPKL M(89)PSPVSPKL 0 0 1 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2649230957031 2 486.265153 970.515753 -0.22862 -0.00011117 -0.54036 -0.00026276 -0.76898 -0.00037393 486.2650940300695 35.254 0.34634 35.254 35.034 35.38 0 45 17 3 0 0 0 0.0086209 2 18566 18566;18669 89.401 51.225 1 17455000 40829 1080 27209 27833 47917;47918 47917 179 0.029315958226106886 MPSPVSPKL 9 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ M(1)PSPVSPKL M(80)PSPVSPKL 0 0 1 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2652893066406 2 486.265153 970.515753 -0.18491 -8.9914E-05 0.47762 0.00023225 0.29271 0.00014233 486.2655439270427 34.944 0.49123 34.722 34.446 34.938 -0.2224 67 21 4 0 0 0 0.010301 2 18242 18242;18339 79.596 39.639 1 16182000 40830 1080 27209 27833 47919;47920 47919 179 0.029315958226106886 MPSPVSPKL 9 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ M(1)PSPVSPKL M(80)PSPVSPKL 0 0 1 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2651062011719 2 486.265153 970.515753 -0.24711 -0.00012016 -0.11865 -5.7695E-05 -0.36576 -0.00017786 486.2652653750645 35.36 0.37276 35.138 34.938 35.31 -0.2224 47 16 4 0 0 0 0.010301 2 18569 18463;18569 79.596 39.639 1 16458000 40831 1080 27209 27833 47921;47922 47922 179 0.029315958226106886 MPSPVSPKL 9 Oxidation (M) _M(Oxidation (M))PSPVSPKL_ M(1)PSPVSPKL M(90)PSPVSPKL 0 0 1 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2655334472656 2 486.265153 970.515753 0.57616 0.00028017 0.41145 0.00020007 0.98761 0.00048024 486.26568686954005 39.68 0.46494 35.229 35.014 35.479 -4.4509 70 29 3 0 0 0 0.0085366 2 23632 23500;23632 90.135 46.277 1 46183000 40832 1080 27209 27833 47923;47924 47924 179 0.029315958226106886 MPSPVSPKL 9 Unmodified _MPSPVSPKL_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2678833007812 2 478.267696 954.520839 NaN NaN NaN NaN NaN NaN NaN 44.61 1 44.294 43.794 44.794 -0.31585 0 0 0 0.024473 1 23806 23806 72.968 34.994 1 40833 1080 27209 27834 47925 47925 0.041758996852195196 MPSQLFTL 8 Unmodified _MPSQLFTL_ 0 0 0 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 MSMS AL20221201_MKP_PDAC_01 4 468.7475280761719 2 468.746596 935.478639 NaN NaN NaN NaN NaN NaN NaN 91.209 1 85.033 84.533 85.533 -6.1757 0 0 0 0.92941 1 60287 60287 14.838 0.25658 1 40834 4189 27210 27835 47926 47926 0.008319242768493496 MPSQSVEQTY 10 Oxidation (M) _M(Oxidation (M))PSQSVEQTY_ M(1)PSQSVEQTY M(64)PSQSVEQTY 0 0 1 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7594604492188 2 593.258253 1184.50195 -0.48849 -0.0002898 2.1069 0.00125 1.6184 0.00096015 593.2580179631623 26.014 0.47106 26.014 25.674 26.145 0 48 22 5 0 0 0 0.038363 2 13222 13222;13334 63.961 50.054 1 5174300 40835 8226 27211 27836 47927;47928 47927 1395 -0.08291726467155058 MPSQSVEQTY 10 Unmodified _MPSQSVEQTY_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2589721679688 2 585.260796 1168.50704 -1.1882 -0.00069538 1.0122 0.00059241 -0.17594 -0.00010297 585.2605327556714 32.54 0.19618 32.54 32.481 32.677 0 17 10 2 0 0 0 0.44171 1 17005 17005 19.362 2.4196 1 2028200 40836 8226 27211 27837 47929 47929 -0.0704742260452349 MPSQSVEQTY 10 Unmodified _MPSQSVEQTY_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.261962890625 2 585.260796 1168.50704 0.57575 0.00033696 0.10813 6.3287E-05 0.68388 0.00040025 585.2610802579837 38.375 0.36585 34.006 33.814 34.18 -4.3689 48 22 3 0 0 0 0.01074 2 22669 22530;22669 86.332 50.205 1 20595000 40837 8226 27211 27837 47930;47931 47931 -0.0704742260452349 MPSQVVKGGAF 11 Oxidation (M) _M(Oxidation (M))PSQVVKGGAF_ M(1)PSQVVKGGAF M(78)PSQVVKGGAF 0 0 1 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7921752929688 2 568.792066 1135.56958 -0.072697 -4.1349E-05 0.541 0.00030772 0.4683 0.00026637 568.7924730059586 32.716 0.4471 32.587 32.37 32.817 -0.12915 47 18 3 0 0 0 0.0033762 2 17090 16986;17090 78.06 58.803 1 5528400 40838 2694 27212 27838 47932;47933 47933 465 0.007217682543114279 MPSQVVKGGAF 11 Oxidation (M) _M(Oxidation (M))PSQVVKGGAF_ M(1)PSQVVKGGAF M(61)PSQVVKGGAF 0 0 1 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7933349609375 2 568.792066 1135.56958 1.1712 0.00066618 -0.50655 -0.00028812 0.66467 0.00037806 568.7914737516089 36.949 0.41778 32.666 32.455 32.873 -4.2835 49 25 3 0 0 0 0.016317 2 21541 21541;21678 61.09 44.941 1 14031000 40839 2694 27212 27838 47934;47935 47934 465 0.007217682543114279 MPSQVVKGGAF 11 Unmodified _MPSQVVKGGAF_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7958374023438 2 560.794609 1119.57467 0.79972 0.00044848 -0.47106 -0.00026417 0.32866 0.00018431 560.7944232018897 46.099 0.39219 41.144 40.922 41.315 -4.9549 60 25 3 0 0 0 0.064626 2 28303 28303;28439 65.474 49.08 1 38278000 40840 2694 27212 27839 47936;47937 47936 0.01966072116920259 MPSRELASM 9 Oxidation (M) _MPSRELASM(Oxidation (M))_ MPSRELASM(1) M(-88)PSRELASM(88) 0 0 1 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2412719726562 2 519.241352 1036.46815 0.29501 0.00015318 -0.97441 -0.00050596 -0.6794 -0.00035277 519.2413467553341 24.673 0.54596 21.79 21.49 22.036 -2.8831 76 31 4 0 0 0 0.0085366 2 13484 13368;13484 90.135 37.867 2 18139000 40841 7171 27213 27840 47938;47939 47939 1241;1242 -0.048624264398995365 MPSRELASM 9 Oxidation (M) _M(Oxidation (M))PSRELASM_ M(1)PSRELASM M(64)PSRELASM(-64) 0 0 1 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MSMS AL20221201_MKP_PDAC_01 4 519.2432861328125 2 519.241352 1036.46815 NaN NaN NaN NaN NaN NaN NaN 30.764 1 27.267 26.767 27.767 -3.497 0 0 0 0.032269 1 17387 17387 65.474 34.205 2 40842 7171 27213 27840 47940 47940 1241;1242 -0.048624264398995365 MPSRELASM 9 Oxidation (M) _MPSRELASM(Oxidation (M))_ 0 0 1 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.241352 1036.46815 -0.11422 -5.9308E-05 -0.22186 -0.0001152 -0.33609 -0.00017451 519.2413064702057 21.503 0.24125 21.503 21.362 21.603 0 -0.14345 0.00035664 NaN 90.135 37 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1029600 40843 7171 27213 27840 1241;1242 -0.048624264398995365 MPSRELASM 9 Unmodified _MPSRELASM_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2438354492188 2 511.243895 1020.47324 0.53038 0.00027115 0.076965 3.9348E-05 0.60734 0.0003105 511.24419028066 38.969 0.58878 34.518 34.223 34.811 -4.4509 81 36 3 0 0 0 0.062454 2 23154 23015;23154 41.956 17.935 1 49147000 40844 7171 27213 27841 47941;47942 47942 -0.03618122577279337 MPSRFAVESFT 11 Unmodified _MPSRFAVESFT_ 0 0 0 REV__ENST00000524249.5_1_2:46769025-46769088:-|nuORF REV__ENST00000524249.5_1_2:46769025-46769088:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3101806640625 2 636.308081 1270.60161 0.35332 0.00022482 1.6776 0.0010675 2.0309 0.0012923 636.3079799759615 55.852 0.37104 49.931 49.737 50.108 -5.9211 42 21 3 0 0 0 0.24216 1 35564 35564 29.841 2.2118 1 14311000 + 40845 28328 27214 27842 47943 47943 -0.0228686406255747 MPSRNYTPY 9 Unmodified _MPSRNYTPY_ 0 0 0 nc|ENSG00000263155|P0CAP1-3|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;ENST00000484300.1_1_15:57972974-57976693:+|nuORF;nc|ENSG00000263155|P0CAP1-10|MYZAP nc|ENSG00000263155|P0CAP1-3|MYZAP nc|ENSG00000263155|P0CAP1-3|MYZAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8440551757812 3 376.842936 1127.50698 0.92855 0.00034992 1.341 0.00050535 2.2696 0.00085527 376.84370958261576 17.416 0.23311 14.829 14.715 14.948 -2.5866 89 44 3 0 0 0 0.50598 1 9064 9064 7.1017 7.1017 1 9350300 40846 10852 27215 27843 47944 47944 -0.051673778138820126 MPSSAVRVL 9 Oxidation (M) _M(Oxidation (M))PSSAVRVL_ M(1)PSSAVRVL M(48)PSSAVRVL 0 0 1 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2681579589844 2 488.268227 974.521901 -0.24356 -0.00011892 -0.34997 -0.00017088 -0.59353 -0.0002898 488.2679761397933 35.452 0.22293 35.229 35.087 35.31 -0.2224 20 9 3 0 0 0 0.044011 1 18551 18551 47.749 11.704 1 2837600 40847 5610 27216 27844 47945 47945 1029 0.03362114054129961 MPSSAVRVL 9 Oxidation (M) _M(Oxidation (M))PSSAVRVL_ M(1)PSSAVRVL M(56)PSSAVRVL 0 0 1 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2672119140625 2 488.268227 974.521901 -0.27537 -0.00013445 -0.90091 -0.00043988 -1.1763 -0.00057434 488.26787905456604 35.626 0.21969 35.404 35.353 35.573 -0.2224 15 9 2 0 0 0 0.028475 1 18679 18679 56.177 25.952 1 5067900 40848 5610 27216 27844 47946 47946 1029 0.03362114054129961 MPSSAVRVL 9 Oxidation (M) _M(Oxidation (M))PSSAVRVL_ 0 0 1 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.268227 974.521901 0.19035 9.2943E-05 -0.33267 -0.00016243 -0.14232 -6.9491E-05 488.2682633650853 35.372 0.18731 35.397 35.306 35.494 0.024971 -0.003123 0.00040314 NaN 56.177 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1353100 40849 5610 27216 27844 1029 0.03362114054129961 MPSSAVRVL 9 Unmodified _MPSSAVRVL_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2703857421875 2 480.27077 958.526987 0.78612 0.00037755 0.41563 0.00019962 1.2018 0.00057717 480.27073599159996 48.902 0.34563 43.506 43.302 43.648 -5.3961 28 20 2 0 0 0 0.018301 1 30442 30442 65.235 27.261 1 33724000 40850 5610 27216 27845 47947 47947 0.04606417916738792 MPSSAVRVL 9 Unmodified _MPSSAVRVL_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000413312.5_1_2:214149168-214161993:+|nuORF ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MSMS AL20221201_MKP_PDAC_01 4 480.2712097167969 2 480.27077 958.526987 NaN NaN NaN NaN NaN NaN NaN 49.028 1 43.632 43.132 44.132 -5.3961 0 0 0 0.083082 1 30588 30588 47.749 17.112 1 40851 5610 27216 27845 47948 47948 0.04606417916738792 MPSSDTTVTF 10 Oxidation (M) _M(Oxidation (M))PSSDTTVTF_ M(1)PSSDTTVTF M(100)PSSDTTVTF 0 0 1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.24365234375 2 551.242072 1100.46959 0.21329 0.00011758 0.15674 8.6404E-05 0.37004 0.00020398 551.2420719578249 43.991 0.56656 43.991 43.605 44.171 0 60 31 3 0 0 0 0.0044003 2 23857 23857;23963 100.37 68.066 1 68013000 40852 1642 27217 27846 47949;47950 47949 277 -0.07662513870172916 MPSSDTTVTF 10 Oxidation (M) _M(Oxidation (M))PSSDTTVTF_ M(1)PSSDTTVTF M(52)PSSDTTVTF 0 0 1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2402954101562 2 551.242072 1100.46959 1.0662 0.00058775 -2.3533 -0.0012972 -1.287 -0.00070948 551.2405708854583 50.484 0.38787 44.945 44.663 45.051 -5.5391 58 24 3 0 0 0 0.074936 1 31676 31676 52.268 14.294 1 33161000 40853 1642 27217 27846 47951 47951 277 -0.07662513870172916 MPSSDTTVTF 10 Unmodified _MPSSDTTVTF_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2442626953125 2 543.244615 1084.47468 0.65236 0.00035439 -1.8704 -0.0010161 -1.218 -0.00066168 543.2434512926569 51.005 0.44093 51.005 50.813 51.254 0 40 23 2 0 0 0 0.2178 1 28128 28128 32.305 16.458 1 8649100 40854 1642 27217 27847 47952 47952 -0.06418210007564085 MPSSDTTVTF 10 Unmodified _MPSSDTTVTF_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2451171875 2 543.244615 1084.47468 1.2567 0.00068269 -0.33412 -0.00018151 0.92257 0.00050118 543.2441919939392 59.003 0.64497 52.929 52.598 53.243 -6.0745 106 35 5 0 0 0 0.1028 2 37834 37706;37834 46.021 19.137 1 164220000 40855 1642 27217 27847 47953;47954 47954 -0.06418210007564085 MPSSDTTVTF 10 Unmodified _MPSSDTTVTF_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.244615 1084.47468 -0.31809 -0.0001728 -1.447 -0.00078608 -1.7651 -0.00095888 543.2439245041224 51.56 0.18446 51.146 51.063 51.248 -0.41407 0.070138 0.00038205 NaN 32.305 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1911800 40856 1642 27217 27847 -0.06418210007564085 MPSSSHLF 8 Oxidation (M) _M(Oxidation (M))PSSSHLF_ M(1)PSSSHLF M(57)PSSSHLF 0 0 1 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2106018066406 2 461.210378 920.406203 -0.091526 -4.2213E-05 -0.34228 -0.00015786 -0.4338 -0.00020008 461.2101219106721 34.557 0.25291 34.557 34.422 34.675 0 21 12 2 0 0 0 0.28922 1 18197 18197 56.541 30.2 1 2285400 40857 3021 27218 27848 47955 47955 522 -0.05718409796713786 MPSSSHLF 8 Oxidation (M) _M(Oxidation (M))PSSSHLF_ 0 0 1 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 461.210378 920.406203 -0.39488 -0.00018212 -2.2321 -0.0010295 -2.627 -0.0012116 461.21010545160885 34.41 0.11964 34.219 34.13 34.25 -0.19131 -0.16906 -0.0016737 NaN 56.541 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 844120 40858 3021 27218 27848 522 -0.05718409796713786 MPSSSHLF 8 Unmodified _MPSSSHLF_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2135314941406 2 453.212921 904.411288 1.1087 0.00050247 -0.25653 -0.00011626 0.85216 0.00038621 453.21271341633854 47.952 0.4854 42.718 42.403 42.888 -5.2339 44 29 2 0 0 0 0.28922 2 29734 29734;29869 56.541 31.867 1 12554000 40859 3021 27218 27849 47956;47957 47956 -0.04474105934104955 MPSSVSWGILL 11 Oxidation (M) _M(Oxidation (M))PSSVSWGILL_ M(1)PSSVSWGILL M(42)PSSVSWGILL 0 0 1 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3164672851562 2 603.315374 1204.6162 NaN NaN NaN NaN NaN NaN NaN 96.416 1 96.409 95.909 96.909 -0.007019 0 0 0 0.15837 1 53549 53549 41.84 16.44 1 40860 9932 27219 27850 47958 47958 1603 0.022072080856105458 MPSVFQNVL 9 Oxidation (M) _M(Oxidation (M))PSVFQNVL_ M(1)PSVFQNVL M(48)PSVFQNVL 0 0 1 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.767822265625 2 525.76806 1049.52157 0.48867 0.00025693 -0.37668 -0.00019804 0.112 5.8886E-05 525.7678217038249 72.182 0.28549 71.706 71.549 71.834 -0.47609 30 12 3 0 0 0 0.042911 1 39485 39485 48.346 8.3885 1 8183800 40861 8162 27220 27851 47959 47959 1383 -0.0012130566574342083 MPSVFQNVL 9 Oxidation (M) _M(Oxidation (M))PSVFQNVL_ M(1)PSVFQNVL M(74)PSVFQNVL 0 0 1 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7675170898438 2 525.76806 1049.52157 0.51749 0.00027208 -0.8313 -0.00043707 -0.31381 -0.00016499 525.7673437538389 72.463 0.31129 71.987 71.834 72.145 -0.47609 44 14 4 0 0 0 0.012148 2 39694 39592;39694 74.423 26.077 1 9329700 40862 8162 27220 27851 47960;47961 47961 1383 -0.0012130566574342083 MPSVFQNVL 9 Oxidation (M) _M(Oxidation (M))PSVFQNVL_ M(1)PSVFQNVL M(57)PSVFQNVL 0 0 1 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7677001953125 2 525.76806 1049.52157 0.40647 0.00021371 -0.72806 -0.00038279 -0.32159 -0.00016908 525.767837774235 71.964 0.29976 72.003 71.829 72.129 0.039024 44 14 4 0 0 0 0.026094 1 39573 39573 57.471 17.514 1 4822700 40863 8162 27220 27851 47962 47962 1383 -0.0012130566574342083 MPSVFQNVL 9 Unmodified _MPSVFQNVL_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7698974609375 2 517.770603 1033.52665 0.40927 0.00021191 -0.30274 -0.00015675 0.10653 5.5159E-05 517.7705565286675 93.402 0.93291 87.226 86.855 87.788 -6.1757 133 62 3 0 0 0 0.015445 4 61738 61601;61738;61872;62055 68.081 37.895 1 30763000 40864 8162 27220 27852 47963;47964;47965;47966 47964 0.011229981968881475 MPSVKVSVF 9 Oxidation (M) _M(Oxidation (M))PSVKVSVF_ M(1)PSVKVSVF M(53)PSVKVSVF 0 0 1 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2729187011719 2 505.272978 1008.5314 -0.043233 -2.1844E-05 1.0865 0.00054898 1.0433 0.00052713 505.2734912808833 50.968 0.4001 50.555 50.338 50.738 -0.41351 32 19 2 0 0 0 0.033587 1 27428 27428 53.404 30.256 1 7155800 40865 3684 27221 27853 47967 47967 646 0.027478823396563712 MPSVKVSVF 9 Oxidation (M) _M(Oxidation (M))PSVKVSVF_ M(1)PSVKVSVF M(44)PSVKVSVF 0 0 1 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2730407714844 2 505.272978 1008.5314 0.9739 0.00049209 -0.32172 -0.00016256 0.65218 0.00032953 505.272917622578 50.575 0.40241 50.522 50.325 50.728 -0.053871 53 19 4 0 0 0 0.05483 1 27419 27419 43.772 25.637 1 13495000 40866 3684 27221 27853 47968 47968 646 0.027478823396563712 MPSVKVSVF 9 Oxidation (M) _M(Oxidation (M))PSVKVSVF_ M(1)PSVKVSVF M(42)PSVKVSVF 0 0 1 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2737426757812 2 505.272978 1008.5314 0.58387 0.00029501 1.382 0.00069829 1.9659 0.0009933 505.27357146844236 55.843 0.28763 49.922 49.753 50.041 -5.9211 28 16 2 0 0 0 0.062454 1 35547 35547 41.956 17.935 1 27232000 40867 3684 27221 27853 47969 47969 646 0.027478823396563712 MPSVKVSVF 9 Oxidation (M) _M(Oxidation (M))PSVKVSVF_ M(1)PSVKVSVF M(44)PSVKVSVF 0 0 1 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2744140625 2 505.272978 1008.5314 0.6249 0.00031574 1.8506 0.00093506 2.4755 0.0012508 505.27427538588074 56.408 0.37801 50.431 50.221 50.599 -5.9769 38 21 2 0 0 0 0.05483 1 35919 35919 43.772 17.431 1 31888000 40868 3684 27221 27853 47970 47970 646 0.027478823396563712 MPSVKVSVF 9 Oxidation (M) _M(Oxidation (M))PSVKVSVF_ 0 0 1 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 505.272978 1008.5314 0.44156 0.00022311 1.2951 0.00065438 1.7367 0.00087749 505.27440330192 50.446 0.38847 50.054 49.911 50.3 -0.3923 0.066013 -7.0748E-05 NaN 41.956 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 6190300 40869 3684 27221 27853 646 0.027478823396563712 MPSVKVSVF 9 Unmodified _MPSVKVSVF_ 0 0 0 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2755126953125 2 497.275521 992.536489 0.42404 0.00021086 -0.16454 -8.1823E-05 0.25949 0.00012904 497.27549684255223 60.238 0.22359 60.185 60.036 60.259 -0.053059 21 12 2 0 0 0 0.029718 1 32812 32812 55.503 35.049 1 6710600 40870 3684 27221 27854 47971 47971 0.03992186202265202 MPSVKVSVF 9 Unmodified _MPSVKVSVF_ 0 0 0 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.27587890625 2 497.275521 992.536489 0.83227 0.00041387 -0.071353 -3.5482E-05 0.76092 0.00037839 497.27543538554886 66.221 0.74979 60.045 59.74 60.489 -6.1757 109 42 4 0 0 0 0.021948 3 43058 43058;43186;43349 61.602 33.115 1 62431000 40871 3684 27221 27854 47972;47973;47974 47972 0.03992186202265202 MPSVKVSVF 9 Unmodified _MPSVKVSVF_ 0 0 0 nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A;ENSG00000123136|ENST00000242776|DDX39A;ENST00000590556.1_1_19:14521762-14522332:-|nuORF nc|ENSG00000123136|O00148-3|DDX39A nc|ENSG00000123136|O00148-3|DDX39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2754821777344 2 497.275521 992.536489 0.70703 0.00035159 -0.52846 -0.00026279 0.17858 8.8801E-05 497.2750246248588 66.955 0.51399 60.779 60.489 61.003 -6.1757 41 28 2 0 0 0 0.026499 1 43529 43529 57.249 34.101 1 21232000 40872 3684 27221 27854 47975 47975 0.03992186202265202 MPSVVGVLVF 10 Oxidation (M) _M(Oxidation (M))PSVVGVLVF_ M(1)PSVVGVLVF M(55)PSVVGVLVF 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.297607421875 2 532.296453 1062.57835 1.9978 0.0010634 1.1184 0.0005953 3.1162 0.0016587 532.2971507861994 94.386 0.35603 94.4 94.184 94.54 0.014244 26 12 3 0 0 0 0.063761 1 52435 52435 54.774 29.374 1 2816500 40873 8355 27222 27855 47976 47976 1409 0.049567418908054606 MPSVVGVLVF 10 Oxidation (M) _M(Oxidation (M))PSVVGVLVF_ M(1)PSVVGVLVF M(46)PSVVGVLVF 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2979125976562 2 532.296453 1062.57835 2.0497 0.0010911 -0.46614 -0.00024812 1.5836 0.00084294 532.2964914984483 94.702 0.4416 94.717 94.54 94.982 0.014244 31 16 3 0 0 0 0.1028 1 52620 52620 46.021 24.274 1 2837500 40874 8355 27222 27855 47977 47977 1409 0.049567418908054606 MPSVVGVLVF 10 Oxidation (M) _M(Oxidation (M))PSVVGVLVF_ 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 532.296453 1062.57835 1.1566 0.00061563 0.65318 0.00034768 1.8097 0.00096331 532.7979684519124 100.27 0.12694 94.094 94.03 94.157 -6.1757 -0.15333 -0.00032541 NaN 54.774 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 20477000 40875 8355 27222 27855 1409 0.049567418908054606 MPSVVGVLVF 10 Unmodified _MPSVVGVLVF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2996826171875 2 524.298996 1046.58344 0.97574 0.00051158 0.074355 3.8984E-05 1.0501 0.00055057 524.2989329470819 101.4 0.12883 95.221 95.163 95.291 -6.1757 11 6 2 0 0 0 0.46514 1 68052 68052 18.146 0.011366 1 23167000 40876 8355 27222 27856 47978 47978 0.062010457534142915 MPSWYPKGY 9 Unmodified _MPSWYPKGY_ 0 0 0 ENST00000446111.1_1_7:65441155-65445239:-|nuORF ENST00000446111.1_1_7:65441155-65445239:-|nuORF ENST00000446111.1_1_7:65441155-65445239:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 564.7634887695312 2 564.762778 1127.511 NaN NaN NaN NaN NaN NaN NaN 17.436 1 14.85 14.35 15.35 -2.5866 0 0 0 0.65645 1 9116 9116 6.7232 0 1 40877 13462 27223 27857 47979 47979 -0.04765288320163563 MPTAYNTDY 9 Oxidation (M) _M(Oxidation (M))PTAYNTDY_ M(1)PTAYNTDY M(61)PTAYNTDY 0 0 1 nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;ENST00000561125.2_1_15:100246921-100252973:+|nuORF;nc|ENSG00000068305|Q02078-8|MEF2A;nc|ENSG00000068305|Q02078-7|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078|MEF2A nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000068305|Q02078-3|MEF2A nc|ENSG00000116604|Q14814-6|MEF2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2216186523438 2 546.221139 1090.42773 -0.030088 -1.6434E-05 -0.061517 -3.3602E-05 -0.091604 -5.0036E-05 546.2210186117633 31.008 0.25999 31.008 30.872 31.132 0 28 12 4 0 0 0 0.022193 1 16138 16138 61.357 43.211 1 3703400 40878 3232;16043 27224 27858 47980 47980 579;1788 -0.1138706955869111 MPTGAGKSLCY 11 Carbamidomethyl (C) _MPTGAGKSLC(Carbamidomethyl (C))Y_ MPTGAGKSLC(1)Y MPTGAGKSLC(70)Y 0 1 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.7745361328125 2 592.775559 1183.53657 0.55577 0.00032945 -0.19096 -0.0001132 0.36481 0.00021625 592.7757996194005 39.009 0.32084 34.558 34.399 34.72 -4.4509 30 20 2 0 0 0 0.0078265 1 23040 23040 70.496 47.759 1 14235000 40879 2573 27225 27859 47981 47981 260 -0.0478618186004951 MPTGGGKSLCY 11 Carbamidomethyl (C) _MPTGGGKSLC(Carbamidomethyl (C))Y_ MPTGGGKSLC(1)Y MPTGGGKSLC(42)Y 0 1 0 ENSG00000004700|ENST00000444129|RECQL;ENSG00000197299|ENST00000355112|BLM ENSG00000004700|ENST00000444129|RECQL;ENSG00000197299|ENST00000355112|BLM ENSG00000004700|ENST00000444129|RECQL MSMS AL20221201_MKP_PDAC_01 4 585.7672119140625 2 585.767734 1169.52091 NaN NaN NaN NaN NaN NaN NaN 36.402 1 32.209 31.709 32.709 -4.1928 0 0 0 0.15174 1 21252 21252 42.312 11.676 1 40880 279;9938 27226 27860 47982 47982 9 -0.05706468377115925 MPTILSRF 8 Unmodified _MPTILSRF_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.7681579589844 2 482.767863 963.521173 0.62608 0.00030225 0.46632 0.00022512 1.0924 0.00052738 482.76805446232794 58.792 0.17501 58.731 58.607 58.782 -0.060719 14 8 2 0 0 0 0.80383 1 32051 32051 4.3292 0 1 1148000 40881 1787 27227 27861 47983 47983 0.037953194050714956 MPTIQITAL 9 Oxidation (M) _M(Oxidation (M))PTIQITAL_ M(1)PTIQITAL M(48)PTIQITAL 0 0 1 ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2778625488281 2 502.27826 1002.54197 -0.2955 -0.00014842 0.5315 0.00026696 0.236 0.00011854 502.2785817092147 70.092 0.44118 69.613 69.472 69.914 -0.47903 50 23 3 0 0 0 0.042911 1 38300 38300 48.346 31.404 1 5749900 40882 3420 27228 27862 47984 47984 607 0.0407986499405979 MPTIQITAL 9 Oxidation (M) _M(Oxidation (M))PTIQITAL_ M(1)PTIQITAL M(59)PTIQITAL 0 0 1 ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2786254882812 2 502.27826 1002.54197 0.69299 0.00034807 0.67347 0.00033827 1.3665 0.00068634 502.2791058419135 77.543 0.62859 71.367 70.938 71.566 -6.1757 60 36 4 0 0 0 0.024882 1 50558 50558 58.679 10.93 1 25679000 40883 3420 27228 27862 47985 47985 607 0.0407986499405979 MPTIQITAL 9 Oxidation (M) _M(Oxidation (M))PTIQITAL_ 0 0 1 ENSG00000119285|ENST00000366582|HEATR1;ENST00000490339.1_1_1:236737366-236737993:-|nuORF ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.27826 1002.54197 0.31875 0.0001601 1.2527 0.00062918 1.5714 0.00078928 502.27903655110913 69.648 0.17337 69.679 69.611 69.784 0.030914 0.032998 0.00062122 NaN 48.346 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 982530 40884 3420 27228 27862 607 0.0407986499405979 MPTKETTKL 9 Unmodified _MPTKETTKL_ 0 0 0 ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B ENSG00000156970|ENST00000287598|BUB1B ENSG00000156970|ENST00000287598|BUB1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1956787109375 3 350.195087 1047.56343 1.5374 0.0005384 0.21179 7.4169E-05 1.7492 0.00061257 350.19531194641456 22.102 0.32256 19.367 19.219 19.542 -2.7348 31 17 2 0 0 0 0.35911 1 11858 11858 14.218 4.6742 1 2567400 40885 6491 27229 27863 47986 47986 0.041552500227680866 MPTKTIEVL 9 Oxidation (M) _M(Oxidation (M))PTKTIEVL_ M(1)PTKTIEVL M(50)PTKTIEVL 0 0 1 ENST00000544140.5_1_11:73555872-73571072:+|nuORF;nc|ENSG00000175581|Q96GC5-3|MRPL48;ENSG00000175581|ENST00000310614|MRPL48 ENST00000544140.5_1_11:73555872-73571072:+|nuORF ENST00000544140.5_1_11:73555872-73571072:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2914428710938 2 524.291368 1046.56818 1.1412 0.0005983 -0.0057587 -3.0193E-06 1.1354 0.00059528 524.2915084220824 42.845 0.42066 42.845 42.625 43.046 0 57 21 4 0 0 0 0.040683 1 23149 23149 49.554 18.918 1 20366000 40886 8530 27230 27864 47987 47987 1447 0.04676134165561052 MPTLPSLVSF 10 Unmodified _MPTLPSLVSF_ 0 0 0 nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2 nc|ENSG00000108506|Q9H0H0|INTS2 nc|ENSG00000108506|Q9H0H0|INTS2 MSMS AL20221201_MKP_PDAC_01 4 546.2938842773438 2 546.293911 1090.57327 NaN NaN NaN NaN NaN NaN NaN 100.76 1 94.586 94.086 95.086 -6.1757 0 0 0 0.034324 1 67464 67464 61.357 19.263 1 40887 2576 27231 27865 47988 47988 0.03160438028180579 MPTMRLLSF 9 2 Oxidation (M) _M(Oxidation (M))PTM(Oxidation (M))RLLSF_ M(1)PTM(1)RLLSF M(62)PTM(62)RLLSF 0 0 2 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2838134765625 2 564.28302 1126.55149 0.30323 0.00017111 -0.63657 -0.00035921 -0.33334 -0.0001881 564.2830868994502 55.455 0.49211 55.386 55.076 55.569 -0.068737 68 24 5 0 0 0 0.021948 1 30131 30131 61.602 27.2 1 59167000 40888 13915 27232 27866 47989 47989 1767;1768 -0.0067268999205225555 MPTMRLLSF 9 Oxidation (M) _M(Oxidation (M))PTMRLLSF_ M(0.996)PTM(0.004)RLLSF M(24)PTM(-24)RLLSF 0 0 1 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2867431640625 2 556.285563 1110.55657 0.94359 0.0005249 0.54932 0.00030558 1.4929 0.00083048 556.285945184201 70.411 0.3001 70.447 70.312 70.612 0.035515 27 13 3 0 0 0 0.047714 1 38765 38765 45.74 20.341 2 2176600 40889 13915 27232 27867 47990 47990 1767;1768 0.005716138705565754 MPTMRLLSF 9 Oxidation (M) _M(Oxidation (M))PTMRLLSF_ M(1)PTMRLLSF M(42)PTM(-42)RLLSF 0 0 1 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.284912109375 2 556.285563 1110.55657 1.2054 0.00067053 -1.1335 -0.00063057 0.071835 3.9961E-05 556.2847212429639 70.696 0.28189 70.732 70.592 70.874 0.035515 21 12 2 0 0 0 0.029718 1 38906 38906 55.503 15.545 2 3339600 40890 13915 27232 27867 47991 47991 1767;1768 0.005716138705565754 MPTMRLLSF 9 Unmodified _MPTMRLLSF_ 0 0 0 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.3323974609375 2 548.288105 1094.56166 1.4029 0.0007692 1.8373 0.0010074 3.2403 0.0017766 548.2900714275867 97.498 0.304 91.323 91.099 91.403 -6.1757 48 16 4 0 0 0 0.083914 1 64504 64504 32.037 22.654 1 114880000 40891 13915 27232 27868 47992 47992 0.018159177331881438 MPTMVPSY 8 Unmodified _MPTMVPSY_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000554202.1_1_12:57492573-57492853:-|nuORF;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2120666503906 2 463.211532 924.408511 1.4299 0.00066236 1.1063 0.00051244 2.5362 0.0011748 463.212292508873 64.432 0.281 58.257 58.017 58.298 -6.1757 25 14 2 0 0 0 0.37649 1 41738 41738 46.921 22.247 1 9312100 40892 7545;15223 27233 27869 47993 47993 -0.05671697383297669 MPTQEVQEL 9 Unmodified _MPTQEVQEL_ 0 0 0 nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 nc|ENSG00000109046|Q9Y6I7-4|WSB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7611083984375 2 537.760432 1073.50631 0.79222 0.00042602 0.21774 0.00011709 1.01 0.00054312 537.7609077713313 53.026 0.3926 47.222 46.99 47.383 -5.8042 48 21 3 0 0 0 0.013041 2 33407 33407;33519 71.922 19.654 1 42632000 40893 13790 27234 27870 47994;47995 47994 -0.027502172536060243 MPTQSLLMY 9 2 Oxidation (M) _M(Oxidation (M))PTQSLLM(Oxidation (M))Y_ M(1)PTQSLLM(1)Y M(48)PTQSLLM(48)Y 0 0 2 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2594604492188 2 558.25921 1114.50387 0.40113 0.00022393 -0.72322 -0.00040374 -0.32209 -0.00017981 558.259098543615 55 0.54274 54.522 54.231 54.774 -0.47798 68 26 3 0 0 0 0.044011 2 29721 29721;29823 47.749 28.492 1 5398000 40894 8162 27235 27871 47996;47997 47996 1384;1385 -0.048803889828832325 MPTRPVPSY 9 Unmodified _MPTRPVPSY_ 0 0 0 ENST00000513199.5_1_4:99943548-99960531:+|nuORF;ENST00000510209.5_1_4:99916904-99957225:+|nuORF;ENSG00000164024|ENST00000296411|METAP1 ENST00000513199.5_1_4:99943548-99960531:+|nuORF ENST00000513199.5_1_4:99943548-99960531:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2689819335938 2 524.268227 1046.5219 0.52751 0.00027656 -0.65873 -0.00034535 -0.13121 -6.8791E-05 524.2682250067681 38.511 0.73156 34.142 33.795 34.527 -4.3689 97 45 4 0 0 0 0.044296 1 22944 22944 47.594 30.652 1 68886000 40895 7115 27236 27872 47998 47998 0.000501140541246059 MPTSQSPAV 9 Unmodified _MPTSQSPAV_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2237548828125 2 459.223485 916.432418 0.6834 0.00031383 -0.19579 -8.9909E-05 0.48761 0.00022392 459.2233670435924 35.301 0.35768 31.206 31.041 31.398 -4.0951 35 21 2 0 0 0 0.025842 1 20437 20437 57.722 21.595 1 13344000 40896 10897 27237 27873 47999 47999 -0.029141406252620072 MPTSSVVNMEF 11 2 Oxidation (M) _M(Oxidation (M))PTSSVVNM(Oxidation (M))EF_ M(1)PTSSVVNM(1)EF M(73)PTSSVVNM(73)EF 0 0 2 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.7782592773438 2 637.275589 1272.53662 0.40036 0.00025514 0.20631 0.00013148 0.60667 0.00038662 637.2756947451817 45.938 0.46376 45.938 45.644 46.108 0 40 22 2 0 0 0 0.006372 2 25101 24984;25101 72.968 52.553 1 7337100 40897 11193 27238 27874 48000;48001 48001 1744;1745 -0.08874226650686978 MPTSSVVNMEF 11 2 Oxidation (M) _M(Oxidation (M))PTSSVVNM(Oxidation (M))EF_ M(1)PTSSVVNM(1)EF M(83)PTSSVVNM(83)EF 0 0 2 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.2749633789062 2 637.275589 1272.53662 0.75069 0.0004784 -0.82037 -0.0005228 -0.069682 -4.4407E-05 637.2747736324792 46.198 0.22404 46.198 46.108 46.332 0 19 10 2 0 0 0 0.0010665 1 25244 25244 82.529 56.261 1 4100900 40898 11193 27238 27874 48002 48002 1744;1745 -0.08874226650686978 MPTSSVVNMEF 11 Unmodified _MPTSSVVNMEF_ 0 0 0 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2818603515625 2 621.280674 1240.5468 0.52132 0.00032388 0.0097813 6.0769E-06 0.5311 0.00032996 621.2807053008238 71.643 0.21974 71.167 71.073 71.293 -0.47609 13 8 3 0 0 0 0.71618 1 39223 39223 2.7352 0.67545 1 530030 40899 11193 27238 27875 48003 48003 -0.06385618925469316 MPTSSVVNMEF 11 Unmodified _MPTSSVVNMEF_ 0 0 0 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2808227539062 2 621.280674 1240.5468 1.2339 0.00076661 0.0082167 5.1049E-06 1.2421 0.00077171 621.2804292049922 79.376 0.47424 73.2 72.93 73.404 -6.1757 65 26 3 0 0 0 0.01364 2 51946 51946;52080 63.961 45.814 1 24371000 40900 11193 27238 27875 48004;48005 48004 -0.06385618925469316 MPTSSVVNMEF 11 Unmodified _MPTSSVVNMEF_ 0 0 0 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.280674 1240.5468 0.69043 0.00042895 -3.1427 -0.0019525 -2.4523 -0.0015236 621.2781374407572 73.415 0.12457 72.939 72.894 73.018 -0.47588 -0.1305 -0.0036318 NaN 63.961 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 389300 40901 11193 27238 27875 -0.06385618925469316 MPTSSVVNMEF 11 Oxidation (M) _MPTSSVVNM(Oxidation (M))EF_ MPTSSVVNM(1)EF M(-65)PTSSVVNM(65)EF 0 0 1 ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF ENST00000257575.8_1_12:117178177-117178294:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 629.2777709960938 2 629.278131 1256.54171 NaN NaN NaN NaN NaN NaN NaN 61.685 1 55.509 55.009 56.009 -6.1757 0 0 0 0.032104 1 39747 39747 67.838 44.048 2 40902 11193 27238 27876 48006 48006 1744;1745 -0.07629922788100885 MPTSTILRL 9 Oxidation (M) _M(Oxidation (M))PTSTILRL_ M(1)PTSTILRL M(60)PTSTILRL 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2982788085938 2 524.296985 1046.57942 0.28082 0.00014723 0.16076 8.4285E-05 0.44158 0.00023152 524.2971843533132 54.994 0.43525 54.926 54.703 55.138 -0.068741 65 21 4 0 0 0 0.023481 2 29800 29800;29904 60.074 33.806 1 24658000 40903 1444 27239 27877 48007;48008 48007 248 0.05798956259673105 MPTSTILRL 9 Oxidation (M) _M(Oxidation (M))PTSTILRL_ M(1)PTSTILRL M(54)PTSTILRL 0 0 1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.296630859375 2 524.296985 1046.57942 1.0494 0.00055018 0.3115 0.00016332 1.3609 0.00071349 524.2971172390119 60.399 0.42693 54.285 54.018 54.445 -6.1147 39 21 2 0 0 0 0.032796 2 38790 38790;38916 53.833 31.097 1 29404000 40904 1444 27239 27877 48009;48010 48009 248 0.05798956259673105 MPTSTILRL 9 Unmodified _MPTSTILRL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.3002319335938 2 516.299527 1030.5845 0.76578 0.00039537 0.046374 2.3943E-05 0.81215 0.00041932 516.2997289418097 68.475 0.56378 62.299 62.028 62.592 -6.1757 70 33 3 0 0 0 0.014417 3 44714 44585;44714;44845 69.105 40.023 1 42488000 40905 1444 27239 27878 48011;48012;48013 48012 0.07043260122304673 MPTVHYEF 8 Oxidation (M) _M(Oxidation (M))PTVHYEF_ M(1)PTVHYEF M(54)PTVHYEF 0 0 1 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.23095703125 2 520.23131 1038.44807 0.54174 0.00028183 -0.4042 -0.00021028 0.13753 7.1549E-05 520.2310557624158 43.17 0.39167 43.17 43.026 43.418 0 70 19 5 0 0 0 0.31612 1 23377 23377 53.576 41.935 1 44449000 40906 4829 27240 27879 48014 48014 872 -0.06961854108226362 MPTVHYEF 8 Oxidation (M) _M(Oxidation (M))PTVHYEF_ M(1)PTVHYEF M(44)PTVHYEF 0 0 1 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2312622070312 2 520.23131 1038.44807 0.18939 9.8524E-05 -1.6489 -0.00085783 -1.4596 -0.0007593 520.2309065887513 43.68 0.21677 43.68 43.507 43.723 0 35 10 4 0 0 0 0.40035 1 23730 23730 44.407 24.968 1 58255000 40907 4829 27240 27879 48015 48015 872 -0.06961854108226362 MPTVHYEF 8 Oxidation (M) _M(Oxidation (M))PTVHYEF_ M(1)PTVHYEF M(40)PTVHYEF 0 0 1 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2322998046875 2 520.23131 1038.44807 NaN NaN NaN NaN NaN NaN NaN 43.9 1 43.584 43.084 44.084 -0.31585 0 0 0 0.50394 1 23372 23372 40.449 24.601 1 40908 4829 27240 27879 48016 48016 872 -0.06961854108226362 MPTVHYEF 8 Unmodified _MPTVHYEF_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2341918945312 2 512.233853 1022.45315 0.21749 0.00011141 -0.084371 -4.3218E-05 0.13312 6.8189E-05 512.2338538416817 53.126 0.32574 52.674 52.515 52.841 -0.45173 39 16 3 0 0 0 0.37649 1 28699 28699 46.921 28.786 1 9109000 40909 4829 27240 27880 48017 48017 -0.05717550245606162 MPTVHYEF 8 Unmodified _MPTVHYEF_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.234619140625 2 512.233853 1022.45315 1.3025 0.00066718 -0.30634 -0.00015692 0.99615 0.00051026 512.2338990896728 58.728 0.56735 52.653 52.319 52.886 -6.0745 103 31 4 0 0 0 0.24071 2 37620 37494;37620 63.563 38.889 1 176360000 40910 4829 27240 27880 48018;48019 48019 -0.05717550245606162 MPTVHYEF 8 Unmodified _MPTVHYEF_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.233853 1022.45315 0.24321 0.00012458 -0.6924 -0.00035467 -0.44919 -0.00023009 512.2335933167748 52.561 0.27862 52.561 52.423 52.702 0 -0.068292 -0.00046846 NaN 63.563 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4155000 40911 4829 27240 27880 -0.05717550245606162 MPTVNQTQVF 10 Unmodified _MPTVNQTQVF_ 0 0 0 nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7913818359375 2 582.789524 1163.56449 1.4138 0.00082396 1.2338 0.00071905 2.6476 0.001543 582.7899710323865 64.258 0.43903 58.082 57.802 58.241 -6.1757 35 22 2 0 0 0 0.046375 2 41572 41572;41706 60.074 30.992 1 14298000 40912 8474 27241 27881 48020;48021 48020 -0.010745356083134538 MPTVPALE 8 Oxidation (M) _M(Oxidation (M))PTVPALE_ M(1)PTVPALE M(44)PTVPALE 0 0 1 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.437744140625 1 873.438631 872.431355 0.5064 0.00044231 0.63304 0.00055292 1.1394 0.00099523 873.4395022097062 60.057 0.23724 60.057 59.962 60.199 0 19 10 2 0 0 0 0.40035 1 33474 33474 44.407 6.2558 1 1870900 + 40913 22217 27242 27882 48022 48022 1849 -0.009963549941630845 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(60)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.760498046875 2 527.759901 1053.50525 0.61997 0.00032719 -0.41257 -0.00021774 0.20739 0.00010945 527.7598402083958 59.539 0.46647 59.539 59.307 59.773 0 58 20 4 0 0 0 0.023164 2 33130 33130;33242 60.39 47.858 1 23040000 40914 7546 27243 27883 48023;48024 48023 1292 -0.019364316224937284 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(60)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7607421875 2 527.759901 1053.50525 0.77556 0.00040931 -0.15812 -8.3447E-05 0.61745 0.00032586 527.759800539869 60.057 0.50652 60.057 59.839 60.345 0 40 22 2 0 0 0 0.023164 2 33410 33410;33516 60.39 47.858 1 27485000 40915 7546 27243 27883 48025;48026 48025 1292 -0.019364316224937284 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(44)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7588500976562 2 527.759901 1053.50525 0.043033 2.2711E-05 -1.4683 -0.00077493 -1.4253 -0.00075221 527.7594068372254 60.148 0.33577 59.657 59.45 59.786 -0.49079 36 16 3 0 0 0 0.052168 1 32784 32784 44.407 24.968 1 6842000 40916 7546 27243 27883 48027 48027 1292 -0.019364316224937284 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(60)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.761474609375 2 527.759901 1053.50525 -0.19731 -0.00010413 -0.26157 -0.00013805 -0.45888 -0.00024218 527.760201840009 60.668 0.34322 60.179 59.97 60.313 -0.48932 38 16 3 0 0 0 0.023164 2 32990 32990;33088 60.39 46.882 1 8168400 40917 7546 27243 27883 48028;48029 48028 1292 -0.019364316224937284 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(74)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7604370117188 2 527.759901 1053.50525 0.77258 0.00040774 -1.2596 -0.00066478 -0.48706 -0.00025705 527.7595212090334 67.071 0.41594 60.896 60.73 61.146 -6.1757 41 22 3 0 0 0 0.012148 1 43643 43643 74.423 51.97 1 22236000 40918 7546 27243 27883 48030 48030 1292 -0.019364316224937284 MPTVSVLEY 9 Oxidation (M) _M(Oxidation (M))PTVSVLEY_ M(1)PTVSVLEY M(51)PTVSVLEY 0 0 1 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7601318359375 2 527.759901 1053.50525 0.68722 0.00036269 0.59966 0.00031648 1.2869 0.00067917 527.7602243257357 67.591 0.47247 61.415 61.146 61.618 -6.1757 45 26 2 0 0 0 0.038285 1 43995 43995 50.855 50.855 1 28076000 40919 7546 27243 27883 48031 48031 1292 -0.019364316224937284 MPTVSVLEY 9 Unmodified _MPTVSVLEY_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7636108398438 2 519.762443 1037.51033 -0.047694 -2.4789E-05 0.91532 0.00047575 0.86762 0.00045096 519.7629800844893 71.175 0.27471 71.175 71.019 71.293 0 20 12 2 0 0 0 0.14602 1 39653 39653 28.487 13.649 1 1840700 40920 7546 27243 27884 48032 48032 -0.006921277598848974 MPTVSVLEY 9 Unmodified _MPTVSVLEY_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.763427734375 2 519.762443 1037.51033 0.44455 0.00023106 -0.097581 -5.0719E-05 0.34697 0.00018034 519.7629533920585 71.677 0.36684 71.201 71.022 71.389 -0.47609 39 14 4 0 0 0 0.038285 2 39209 39209;39314 50.855 37.347 1 5560500 40921 7546 27243 27884 48033;48034 48033 -0.006921277598848974 MPTVSVLEY 9 Unmodified _MPTVSVLEY_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.762443 1037.51033 1.1443 0.00059477 2.6679 0.0013867 3.8122 0.0019815 519.76450193605 71.158 0.18963 71.197 71.089 71.279 0.039024 0.0057404 0.0023664 NaN 50.855 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 614720 40922 7546 27243 27884 -0.006921277598848974 MPVAAREASIY 11 Oxidation (M) _M(Oxidation (M))PVAAREASIY_ M(1)PVAAREASIY M(59)PVAAREASIY 0 0 1 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3087158203125 2 612.308081 1222.60161 -0.57109 -0.00034969 0.34552 0.00021157 -0.22557 -0.00013812 612.3084297449053 33.039 0.25849 33.039 32.908 33.166 0 32 12 3 0 0 0 0.018218 1 17272 17272 59.052 38.599 1 5234800 40923 3048 27244 27885 48035 48035 527 -0.0007886406253874156 MPVAQQPVY 9 Oxidation (M) _M(Oxidation (M))PVAQQPVY_ M(1)PVAQQPVY M(40)PVAQQPVY 0 0 1 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.760009765625 2 524.760235 1047.50592 -0.22222 -0.00011661 -0.40492 -0.00021248 -0.62714 -0.0003291 524.7601532957982 33.983 0.34967 33.983 33.841 34.19 0 62 17 5 0 0 0 0.068777 1 17877 17877 40.449 29.625 1 222800000 40924 14623 27245 27886 48036 48036 1776 -0.015935921828031496 MPVAQQPVY 9 Oxidation (M) _M(Oxidation (M))PVAQQPVY_ M(1)PVAQQPVY M(50)PVAQQPVY 0 0 1 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7614135742188 2 524.760235 1047.50592 -0.35697 -0.00018733 1.6471 0.00086431 1.2901 0.00067698 524.7604993466697 33.914 0.30169 33.723 33.541 33.843 -0.19131 34 11 4 0 0 0 0.040472 1 17666 17666 49.669 30.412 1 6407300 40925 14623 27245 27886 48037 48037 1776 -0.015935921828031496 MPVAQQPVY 9 Oxidation (M) _M(Oxidation (M))PVAQQPVY_ M(1)PVAQQPVY M(54)PVAQQPVY 0 0 1 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7611694335938 2 524.760235 1047.50592 0.93477 0.00049053 -0.068262 -3.5821E-05 0.86651 0.00045471 524.7601264664016 39.112 0.39587 34.661 34.445 34.84 -4.4509 81 25 4 0 0 0 0.03327 1 23067 23067 53.576 29.555 1 102240000 40926 14623 27245 27886 48038 48038 1776 -0.015935921828031496 MPVAQQPVY 9 Oxidation (M) _M(Oxidation (M))PVAQQPVY_ M(1)PVAQQPVY M(47)PVAQQPVY 0 0 1 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7614135742188 2 524.760235 1047.50592 0.89287 0.00046854 -0.18787 -9.8586E-05 0.705 0.00036995 524.7602086163922 39.481 0.49799 35.03 34.796 35.294 -4.4509 94 30 4 0 0 0 0.045537 3 23340 23340;23468;23626 46.921 29.825 1 127570000 40927 14623 27245 27886 48039;48040;48041 48039 1776 -0.015935921828031496 MPVAQQPVY 9 Unmodified _MPVAQQPVY_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.76171875 2 516.762778 1031.511 0.66805 0.00034522 -1.4132 -0.00073028 -0.74513 -0.00038506 516.7620035924889 43.037 0.25495 43.037 42.928 43.183 0 31 12 3 0 0 0 0.027803 1 23326 23326 56.541 40.694 1 26910000 40928 14623 27245 27887 48042 48042 -0.003492883201715813 MPVAQQPVY 9 Unmodified _MPVAQQPVY_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.762939453125 2 516.762778 1031.511 0.1272 6.5734E-05 0.045296 2.3407E-05 0.1725 8.9141E-05 516.7627231604806 43.363 0.29954 43.052 42.908 43.207 -0.31039 29 14 3 0 0 0 0.016494 1 23049 23049 67.035 53.527 1 17282000 40929 14623 27245 27887 48043 48043 -0.003492883201715813 MPVAQQPVY 9 Unmodified _MPVAQQPVY_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7625732421875 2 516.762778 1031.511 NaN NaN NaN NaN NaN NaN NaN 43.024 1 43.008 42.508 43.508 -0.015667 0 0 0 0.13852 1 23051 23051 38.151 25.62 1 40930 14623 27245 27887 48044 48044 -0.003492883201715813 MPVAQQPVY 9 Unmodified _MPVAQQPVY_ 0 0 0 ENST00000512410.1_1_4:175416602-175443578:-|nuORF;ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-2|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD ENST00000512410.1_1_4:175416602-175443578:-|nuORF ENST00000512410.1_1_4:175416602-175443578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7630004882812 2 516.762778 1031.511 1.1277 0.00058276 -0.41744 -0.00021572 0.71026 0.00036704 516.7629016168298 50.141 0.60517 44.602 44.393 44.998 -5.5391 163 39 5 0 0 0 0.016494 3 31423 31284;31423;31566 67.035 52.197 1 746240000 40931 14623 27245 27887 48045;48046;48047 48046 -0.003492883201715813 MPVASGPMPAP 11 Unmodified _MPVASGPMPAP_ 0 0 0 ENSG00000184408|ENST00000331113|KCND2 ENSG00000184408|ENST00000331113|KCND2 ENSG00000184408|ENST00000331113|KCND2 MSMS AL20221201_MKP_PDAC_01 4 527.7533569335938 2 527.756638 1053.49872 NaN NaN NaN NaN NaN NaN NaN 50.048 1 44.509 44.009 45.009 -5.5391 0 0 0 0.37978 1 31340 31340 29.082 7.5446 1 40932 9255 27246 27888 48048 48048 -0.02588648054870646 MPVASSEASTL 11 Oxidation (M) _M(Oxidation (M))PVASSEASTL_ M(1)PVASSEASTL M(68)PVASSEASTL 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7633056640625 2 554.763171 1107.51179 -0.46663 -0.00025887 0.0092377 5.1247E-06 -0.4574 -0.00025375 554.7631857470974 32.889 0.2555 32.889 32.753 33.008 0 44 12 4 0 0 0 0.0097967 2 17275 17177;17275 68.081 26.241 1 15930000 40933 7922 27247 27889 48049;48050 48050 1347 -0.03766538461786695 MPVASSEASTL 11 Oxidation (M) _M(Oxidation (M))PVASSEASTL_ M(1)PVASSEASTL M(68)PVASSEASTL 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7630004882812 2 554.763171 1107.51179 -0.21592 -0.00011979 -0.4191 -0.0002325 -0.63502 -0.00035229 554.7630201187297 33.141 0.27728 33.141 33.008 33.285 0 43 13 4 0 0 0 0.0097967 1 17377 17377 68.081 26.241 1 21419000 40934 7922 27247 27889 48051 48051 1347 -0.03766538461786695 MPVASSEASTL 11 Oxidation (M) _M(Oxidation (M))PVASSEASTL_ M(1)PVASSEASTL M(85)PVASSEASTL 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7627563476562 2 554.763171 1107.51179 0.76369 0.00042367 0.3779 0.00020964 1.1416 0.00063331 554.7634040958524 38.994 0.5434 34.543 34.191 34.734 -4.4509 61 34 3 0 0 0 0.00081493 2 23142 23009;23142 85.272 29.095 1 17332000 40935 7922 27247 27889 48052;48053 48053 1347 -0.03766538461786695 MPVASSEASTL 11 Oxidation (M) _M(Oxidation (M))PVASSEASTL_ M(1)PVASSEASTL M(42)PVASSEASTL 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20221201_MKP_PDAC_01 4 554.76318359375 2 554.763171 1107.51179 NaN NaN NaN NaN NaN NaN NaN 38.646 1 34.277 33.777 34.777 -4.3689 0 0 0 0.15837 1 22830 22830 41.84 20.303 1 40936 7922 27247 27889 48054 48054 1347 -0.03766538461786695 MPVASSEASTL 11 Unmodified _MPVASSEASTL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7658081054688 2 546.765714 1091.51688 0.89638 0.00049011 -0.63367 -0.00034647 0.26271 0.00014364 546.7653300702831 42.867 0.3075 42.867 42.718 43.026 0 31 15 3 0 0 0 0.043669 1 23230 23230 52.268 34.133 1 8301700 40937 7922 27247 27890 48055 48055 -0.025222345991551265 MPVASSEASTL 11 Unmodified _MPVASSEASTL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7662963867188 2 546.765714 1091.51688 1.0287 0.00056247 -1.0478 -0.00057288 -0.019033 -1.0407E-05 546.7656067316732 50.382 0.4743 44.843 44.594 45.068 -5.5391 112 30 5 0 0 0 0.0033239 2 31627 31488;31627 78.149 55.413 1 130540000 40938 7922 27247 27890 48056;48057 48057 -0.025222345991551265 MPVDDVIGTL 10 Oxidation (M) _M(Oxidation (M))PVDDVIGTL_ M(1)PVDDVIGTL M(52)PVDDVIGTL 0 0 1 nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2 nc|ENSG00000140157|Q8N8Q9-2|NIPA2 nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2703247070312 2 538.270632 1074.52671 0.4584 0.00024674 -0.136 -7.3203E-05 0.3224 0.00017354 538.270864781792 66.808 0.68623 66.808 66.446 67.132 0 79 31 3 0 0 0 0.074936 1 37276 37276 52.268 30.522 1 6311100 40939 5209 27248 27891 48058 48058 957 -0.007570465937760673 MPVDDVIGTL 10 Unmodified _MPVDDVIGTL_ 0 0 0 nc|ENSG00000140157|Q8N8Q9-2|NIPA2;ENSG00000140157|ENST00000337451|NIPA2 nc|ENSG00000140157|Q8N8Q9-2|NIPA2 nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2736206054688 2 530.273175 1058.5318 1.0275 0.00054485 -0.26491 -0.00014048 0.76258 0.00040437 530.2733342258654 85.962 0.37544 79.786 79.581 79.957 -6.1757 36 20 2 0 0 0 0.074936 1 56585 56585 52.268 24.64 1 19215000 40940 5209 27248 27892 48059 48059 0.00487257268855501 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ M(1)PVDPNEPTY M(75)PVDPNEPTY 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7549438476562 2 589.755346 1177.49614 -0.92612 -0.00054619 -0.22305 -0.00013155 -1.1492 -0.00067773 589.7553302220931 32.842 0.34928 32.842 32.618 32.968 0 71 17 5 0 0 0 0.020813 2 17111 17111;17219 74.929 64.105 1 77478000 40941 2807;7757 27249 27893 48060;48061 48060 488 -0.08550824978829041 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ M(1)PVDPNEPTY M(96)PVDPNEPTY 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7549438476562 2 589.755346 1177.49614 -0.65084 -0.00038384 -0.10823 -6.3832E-05 -0.75907 -0.00044767 589.7553930778231 33.094 0.43727 33.094 32.927 33.365 0 83 21 5 0 0 0 0.0057604 2 17320 17320;17425 96.285 85.461 1 92111000 40942 2807;7757 27249 27893 48062;48063 48062 488 -0.08550824978829041 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ M(1)PVDPNEPTY M(85)PVDPNEPTY 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7555541992188 2 589.755346 1177.49614 0.53976 0.00031833 -0.56691 -0.00033434 -0.027144 -1.6008E-05 589.755180712028 38.942 0.78646 34.491 33.948 34.734 -4.4509 100 50 4 0 0 0 0.01132 2 22984 22984;23120 85.272 69.425 1 59407000 40943 2807;7757 27249 27893 48064;48065 48064 488 -0.08550824978829041 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ M(1)PVDPNEPTY M(89)PVDPNEPTY 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MSMS AL20221201_MKP_PDAC_01 4 589.7562255859375 2 589.755346 1177.49614 NaN NaN NaN NaN NaN NaN NaN 38.51 1 34.141 33.641 34.641 -4.3689 0 0 0 0.028528 1 22730 22730 88.954 47.114 1 40944 2807;7757 27249 27893 48066 48066 488 -0.08550824978829041 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ M(1)PVDPNEPTY M(65)PVDPNEPTY 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MSMS AL20221201_MKP_PDAC_01 4 589.755859375 2 589.755346 1177.49614 NaN NaN NaN NaN NaN NaN NaN 38.687 1 34.236 33.736 34.736 -4.4509 0 0 0 0.0192 1 22860 22860 65.235 44.781 1 40945 2807;7757 27249 27893 48067 48067 488 -0.08550824978829041 MPVDPNEPTY 10 Oxidation (M) _M(Oxidation (M))PVDPNEPTY_ 0 0 1 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 589.755346 1177.49614 -0.26806 -0.00015809 -0.041261 -2.4334E-05 -0.30932 -0.00018242 589.755608388157 33.258 0.15958 33.099 32.984 33.144 -0.15918 0.002712 6.7189E-05 NaN 96.285 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 641020 40946 2807;7757 27249 27893 488 -0.08550824978829041 MPVDPNEPTY 10 Unmodified _MPVDPNEPTY_ 0 0 0 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7575073242188 2 581.757889 1161.50123 0.053878 3.1344E-05 -0.30306 -0.00017631 -0.24918 -0.00014496 581.757975228273 42.086 0.37487 42.086 41.864 42.238 0 49 19 3 0 0 0 0.085354 2 22806 22695;22806 49.933 32.82 1 17684000 40947 2807;7757 27249 27894 48068;48069 48069 -0.07306521116197473 MPVDPNEPTY 10 Unmodified _MPVDPNEPTY_ 0 0 0 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;ENSG00000111653|ENST00000341550|ING4;nc|ENSG00000111653|Q9UNL4|ING4;ENST00000484795.5_1_12:6760363-6761595:-|nuORF;ENST00000472002.5_1_12:6760363-6762075:-|nuORF;ENST00000488381.5_1_12:6760363-6764813:-|nuORF;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5 nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000168395|Q8WYH8-2|ING5 nc|ENSG00000168395|Q8WYH8-2|ING5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.758544921875 2 581.757889 1161.50123 1.1304 0.00065763 -0.38134 -0.00022185 0.74908 0.00043578 581.7577844213104 49.646 0.61452 44.107 43.793 44.408 -5.5391 113 38 4 0 0 0 0.0093042 3 31023 30894;31023;31152 88.954 68.5 1 357300000 40948 2807;7757 27249 27894 48070;48071;48072 48071 -0.07306521116197473 MPVDSFNSM 9 2 Oxidation (M) _M(Oxidation (M))PVDSFNSM(Oxidation (M))_ M(1)PVDSFNSM(1) M(71)PVDSFNSM(71) 0 0 2 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.208740234375 2 530.209718 1058.40488 -0.2837 -0.00015042 -0.7955 -0.00042178 -1.0792 -0.0005722 530.2094082014742 28.734 0.3444 28.734 28.538 28.883 0 34 16 4 0 0 0 0.013323 1 14857 14857 71.134 45.734 1 6186700 40949 721 27250 27895 48073 48073 112;113 -0.1219841194779292 MPVDSFNSM 9 2 Oxidation (M) _M(Oxidation (M))PVDSFNSM(Oxidation (M))_ M(1)PVDSFNSM(1) M(54)PVDSFNSM(54) 0 0 2 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.208740234375 2 530.209718 1058.40488 -0.13585 -7.2029E-05 -1.8451 -0.00097831 -1.981 -0.0010503 530.2086650650314 29.013 0.48807 29.013 28.861 29.349 0 57 23 4 0 0 0 0.03327 1 14960 14960 53.576 41.044 1 5008900 40950 721 27250 27895 48074 48074 112;113 -0.1219841194779292 MPVDSFNSM 9 Unmodified _MPVDSFNSM_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2154541015625 2 514.214803 1026.41505 0.44436 0.0002285 0.10214 5.2522E-05 0.5465 0.00028102 514.2148457641487 61.995 0.38686 55.819 55.597 55.984 -6.1757 30 21 2 0 0 0 0.013323 1 39932 39932 71.134 44.25 1 30900000 40951 721 27250 27896 48075 48075 -0.09709804222575258 MPVDSFNSML 10 2 Oxidation (M) _M(Oxidation (M))PVDSFNSM(Oxidation (M))L_ M(1)PVDSFNSM(1)L M(75)PVDSFNSM(75)L 0 0 2 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.751953125 2 586.75175 1171.48895 0.46811 0.00027467 -0.63962 -0.0003753 -0.17151 -0.00010063 586.7514915110452 49.71 0.5223 49.71 49.487 50.009 0 61 23 3 0 0 0 0.020813 2 27324 27324;27432 74.929 42.624 1 10708000 40952 721 27251 27897 48076;48077 48076 112;113 -0.08993880850880487 MPVDSFNSML 10 Unmodified _MPVDSFNSML_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.757568359375 2 570.756835 1139.49912 1.0392 0.00059313 0.29213 0.00016673 1.3313 0.00075987 570.7572459632787 83.971 0.37682 77.796 77.587 77.964 -6.1757 36 19 2 0 0 0 0.02987 2 55256 55133;55256 68.081 46.334 1 16033000 40953 721 27251 27898 48078;48079 48079 -0.06505273125662825 MPVEGMVF 8 2 Oxidation (M) _M(Oxidation (M))PVEGM(Oxidation (M))VF_ M(1)PVEGM(1)VF M(53)PVEGM(53)VF 0 0 2 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7118530273438 2 471.208989 940.403426 0.5258 0.00024776 0.10135 4.7759E-05 0.62715 0.00029552 471.20889305390534 45.811 0.55573 45.811 45.512 46.068 0 49 27 2 0 0 0 0.32412 2 25030 24911;25030 52.693 36.925 1 4603300 40954 4684 27252 27899 48080;48081 48081 848;849 -0.06916001245895131 MPVEKNITL 9 Oxidation (M) _M(Oxidation (M))PVEKNITL_ M(1)PVEKNITL M(77)PVEKNITL 0 0 1 ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB ENST00000505896.5_1_5:49695109-49707239:-|nuORF ENST00000505896.5_1_5:49695109-49707239:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7893676757812 2 530.788992 1059.56343 0.31382 0.00016657 0.033122 1.7581E-05 0.34694 0.00018415 530.78882837061 37.436 0.62722 37.436 37.238 37.865 0 56 32 2 0 0 0 0.011291 2 19881 19881;20000 76.825 48.338 1 22557000 40955 8005 27253 27900 48082;48083 48082 1362 0.03603250022774773 MPVEKNITL 9 Unmodified _MPVEKNITL_ 0 0 0 ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB ENST00000505896.5_1_5:49695109-49707239:-|nuORF ENST00000505896.5_1_5:49695109-49707239:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2403564453125 2 522.791535 1043.56852 0.49136 0.00025688 -0.39733 -0.00020772 0.094031 4.9159E-05 522.7914054909833 52.007 0.34155 46.272 46.051 46.393 -5.7345 37 23 2 0 0 0 0.16954 1 32672 32672 19.362 1.227 1 89818000 40956 8005 27253 27901 48084 48084 0.048475538854063416 MPVETFSEF 9 Unmodified _MPVETFSEF_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;ENST00000486515.1_1_1:19401328-19404299:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.744384765625 2 543.74425 1085.47395 1.2924 0.00070276 0.14008 7.6165E-05 1.4325 0.00077892 543.7443061352086 79.383 0.45561 73.207 72.849 73.304 -6.1757 46 25 2 0 0 0 0.052168 1 51967 51967 44.407 8.3628 1 16127000 40957 4011 27254 27902 48085 48085 -0.06537004656593126 MPVEVQTEL 9 Oxidation (M) _M(Oxidation (M))PVEVQTEL_ M(1)PVEVQTEL M(48)PVEVQTEL 0 0 1 ENSG00000172262|ENST00000682664|ZNF131;nc|ENSG00000172262|P52739-2|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.261962890625 2 531.262807 1060.51106 0.50396 0.00026774 -0.41724 -0.00022167 0.086721 4.6071E-05 531.2623758503513 47.332 0.4127 47.332 47.081 47.494 0 46 18 4 0 0 0 0.042911 1 25948 25948 48.346 11.88 1 3611900 40958 8196 27255 27903 48086 48086 1390 -0.016773331108424827 MPVEVQTEL 9 Unmodified _MPVEVQTEL_ 0 0 0 ENSG00000172262|ENST00000682664|ZNF131;nc|ENSG00000172262|P52739-2|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2665405273438 2 523.26535 1044.51615 0.33916 0.00017747 1.34 0.00070117 1.6791 0.00087864 523.2661602683403 65.508 0.54958 59.333 59.11 59.659 -6.1757 46 31 2 0 0 0 0.10734 1 42498 42498 32.305 11.852 1 10472000 40959 8196 27255 27904 48087 48087 -0.004330292482109144 MPVFPDFKM 9 2 Oxidation (M) _M(Oxidation (M))PVFPDFKM(Oxidation (M))_ M(1)PVFPDFKM(1) M(48)PVFPDFKM(48) 0 0 2 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2648315429688 2 572.264296 1142.51404 0.61403 0.00035139 -0.31624 -0.00018097 0.29779 0.00017042 572.2641725506656 53.807 0.29589 53.34 53.17 53.466 -0.46664 30 14 3 0 0 0 0.044296 1 29103 29103 47.594 35.954 1 3136400 40960 16013 27256 27905 48088 48088 1784;1785 -0.05151781257654875 MPVFPDFKM 9 2 Oxidation (M) _M(Oxidation (M))PVFPDFKM(Oxidation (M))_ M(1)PVFPDFKM(1) M(50)PVFPDFKM(50) 0 0 2 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.263916015625 2 572.264296 1142.51404 0.4087 0.00023388 -0.018319 -1.0483E-05 0.39038 0.0002234 572.2645100157475 54.146 0.3153 53.679 53.507 53.822 -0.46664 37 15 3 0 0 0 0.040683 1 29297 29297 49.554 32.468 1 4410500 40961 16013 27256 27905 48089 48089 1784;1785 -0.05151781257654875 MPVFPDFKM 9 2 Oxidation (M) _M(Oxidation (M))PVFPDFKM(Oxidation (M))_ M(1)PVFPDFKM(1) M(50)PVFPDFKM(50) 0 0 2 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.26513671875 2 572.264296 1142.51404 -0.19708 -0.00011278 0.74799 0.00042805 0.55091 0.00031527 572.2648262264568 53.455 0.32201 53.391 53.177 53.499 -0.063423 31 15 3 0 0 0 0.040683 1 28983 28983 49.554 32.468 1 3211200 40962 16013 27256 27905 48090 48090 1784;1785 -0.05151781257654875 MPVFPDFKM 9 2 Oxidation (M) _M(Oxidation (M))PVFPDFKM(Oxidation (M))_ M(1)PVFPDFKM(1) M(50)PVFPDFKM(50) 0 0 2 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.264404296875 2 572.264296 1142.51404 -0.33844 -0.00019368 -0.2213 -0.00012664 -0.55975 -0.00032032 572.2642404023227 53.719 0.30023 53.656 53.566 53.866 -0.063423 27 20 2 0 0 0 0.040683 1 29158 29158 49.554 32.468 1 5892000 40963 16013 27256 27905 48091 48091 1784;1785 -0.05151781257654875 MPVGAWASP 9 Unmodified _MPVGAWASP_ 0 0 0 ENST00000525250.5_1_11:821747-821795:+|nuORF ENST00000525250.5_1_11:821747-821795:+|nuORF ENST00000525250.5_1_11:821747-821795:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2237854003906 2 458.223288 914.432024 1.3816 0.00063309 -0.29368 -0.00013457 1.0879 0.00049852 458.2231642124464 63.922 0.32233 57.747 57.595 57.918 -6.1757 28 17 2 0 0 0 0.040472 1 41350 41350 49.669 24.995 1 13339000 40964 14792 27257 27906 48092 48092 -0.02861515554457128 MPVGDPPRTVL 11 Oxidation (M) _M(Oxidation (M))PVGDPPRTVL_ M(1)PVGDPPRTVL M(61)PVGDPPRTVL 0 0 1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.3184814453125 2 599.318448 1196.62234 -0.11094 -6.649E-05 -0.11059 -6.6276E-05 -0.22153 -0.00013277 599.3181827403189 40.079 0.6569 40.079 39.775 40.432 0 87 32 3 0 0 0 0.016317 3 21622 21398;21515;21622 61.09 39.553 1 6213800 40965 2100 27258 27907 48093;48094;48095 48095 359 0.031897263171231316 MPVGDPPRTVL 11 Oxidation (M) _M(Oxidation (M))PVGDPPRTVL_ M(1)PVGDPPRTVL M(61)PVGDPPRTVL 0 0 1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.2890014648438 2 599.318448 1196.62234 0.1665 9.9787E-05 0.66497 0.00039853 0.83147 0.00049831 599.3188797126248 45.647 0.31018 40.692 40.626 40.936 -4.9549 33 20 2 0 0 0 0.051089 1 28101 28101 61.09 28.784 1 11810000 40966 2100 27258 27907 48096 48096 359 0.031897263171231316 MPVGDPPRTVL 11 Unmodified _MPVGDPPRTVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3233032226562 2 591.320991 1180.62743 0.74513 0.00044061 1.8368 0.0010861 2.5819 0.0015268 591.3224924624158 54.785 0.37959 48.92 48.819 49.199 -5.8653 51 23 4 0 0 0 0.085069 2 34946 34800;34946 53.317 37.168 1 42137000 40967 2100 27258 27908 48097;48098 48098 0.044340301797319626 MPVGHIDIY 9 Oxidation (M) _M(Oxidation (M))PVGHIDIY_ M(1)PVGHIDIY M(57)PVGHIDIY 0 0 1 ENSG00000101670|ENST00000261292|LIPG;nc|ENSG00000101670|Q9Y5X9-2|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.760009765625 2 530.760235 1059.50592 0.023349 1.2393E-05 0.63388 0.00033644 0.65723 0.00034883 530.7606038586976 45.22 0.30996 45.22 44.996 45.306 0 26 15 2 0 0 0 0.027803 1 24614 24614 56.541 28.054 1 16345000 40968 1985 27259 27909 48099 48099 338 -0.021455921827737257 MPVGMTHGL 9 2 Oxidation (M) _M(Oxidation (M))PVGM(Oxidation (M))THGL_ M(1)PVGM(1)THGL M(71)PVGM(71)THGL 0 0 2 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7265014648438 2 487.725338 973.436123 -0.15967 -7.7873E-05 0.64785 0.00031597 0.48819 0.0002381 487.7260227052244 23.246 0.60132 23.246 22.888 23.489 0 104 30 4 0 0 0 0.013472 2 11796 11796;11893 70.716 40.491 1 6947900 40969 1612 27260 27910 48100;48101 48100 270;271 -0.05165794123058731 MPVGMTHGL 9 2 Oxidation (M) _M(Oxidation (M))PVGM(Oxidation (M))THGL_ M(1)PVGM(1)THGL M(51)PVGM(51)THGL 0 0 2 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7252807617188 2 487.725338 973.436123 0.12604 6.1471E-05 -0.36175 -0.00017643 -0.23571 -0.00011496 487.7253620694701 26.155 0.58062 23.204 22.841 23.422 -2.9511 76 36 3 0 0 0 0.038285 2 14226 14226;14443 50.855 33.913 1 19058000 40970 1612 27260 27910 48102;48103 48102 270;271 -0.05165794123058731 MPVGMTHGL 9 Oxidation (M) _MPVGM(Oxidation (M))THGL_ MPVGM(1)THGL M(-45)PVGM(45)THGL 0 0 1 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7286071777344 2 479.72788 957.441208 0.2301 0.00011038 0.61481 0.00029494 0.84491 0.00040533 479.7284816916247 31.69 0.24277 31.56 31.432 31.675 -0.12915 19 9 3 0 0 0 0.03327 1 16475 16475 53.576 35.441 2 2517900 40971 1612 27260 27911 48104 48104 270;271 -0.039214902604385315 MPVGMTHGL 9 Oxidation (M) _MPVGM(Oxidation (M))THGL_ MPVGM(1)THGL M(-73)PVGM(73)THGL 0 0 1 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.72900390625 2 479.72788 957.441208 1.2689 0.00060872 -0.9355 -0.00044879 0.33339 0.00015994 479.7278629393207 36.046 0.48423 31.853 31.598 32.082 -4.1928 97 29 4 0 0 0 0.0094915 3 20879 20879;21010;21148 81.864 51.639 2 64903000 40972 1612 27260 27911 48105;48106;48107 48105 270;271 -0.039214902604385315 MPVGMTHGL 9 Oxidation (M) _M(Oxidation (M))PVGMTHGL_ M(1)PVGMTHGL M(36)PVGM(-36)THGL 0 0 1 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7278747558594 2 479.72788 957.441208 1.228 0.00058909 -1.7599 -0.00084429 -0.53198 -0.0002552 479.727150723956 37.858 0.43437 33.489 33.237 33.671 -4.3689 55 25 3 0 0 0 0.042911 1 22279 22279 48.346 33.764 2 25889000 40973 1612 27260 27911 48108 48108 270;271 -0.039214902604385315 MPVGMTHGL 9 Unmodified _MPVGMTHGL_ 0 0 0 ENSG00000092203|ENST00000448790|TOX4;nc|ENSG00000092203|O94842-2|TOX4 ENSG00000092203|ENST00000448790|TOX4 ENSG00000092203|ENST00000448790|TOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7308044433594 2 471.730423 941.446293 0.94298 0.00044483 0.0083916 3.9586E-06 0.95137 0.00044879 471.7306326728351 48.397 0.51436 43.163 42.888 43.403 -5.2339 84 30 4 0 0 0 0.03327 2 30120 30120;30251 53.576 9.1686 1 99227000 40974 1612 27260 27912 48109;48110 48109 -0.026771863978297006 MPVGPAPGM 9 Oxidation (M) _MPVGPAPGM(Oxidation (M))_ MPVGPAPGM(1) M(-56)PVGPAPGM(56) 0 0 1 ENSG00000124562|ENST00000244520|SNRPC;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7039489746094 2 436.703874 871.393195 0.57455 0.00025091 -0.79371 -0.00034662 -0.21916 -9.5709E-05 436.70399787448446 38.579 0.57322 34.211 33.87 34.443 -4.3689 80 36 3 0 0 0 0.028712 3 22589 22589;22727;22862 56.048 36.609 2 32431000 40975 3797;14661 27261 27913 48111;48112;48113 48111 666;667 -0.04764564180470643 MPVGPAPGM 9 Oxidation (M) _M(Oxidation (M))PVGPAPGM_ M(1)PVGPAPGM M(46)PVGPAPGM(-46) 0 0 1 ENSG00000124562|ENST00000244520|SNRPC;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7036437988281 2 436.703874 871.393195 1.0338 0.00045146 -1.1221 -0.00049 -0.088256 -3.8542E-05 436.7036015504759 42.548 0.68313 37.863 37.423 38.107 -4.6846 63 44 2 0 0 0 0.047696 1 25823 25823 45.75 24.879 2 13450000 40976 3797;14661 27261 27913 48114 48114 666;667 -0.04764564180470643 MPVGPAPGM 9 Unmodified _MPVGPAPGM_ 0 0 0 ENSG00000124562|ENST00000244520|SNRPC;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7067565917969 2 428.706417 855.398281 0.88977 0.00038145 -0.97574 -0.00041831 -0.085972 -3.6857E-05 428.706498900301 54.693 0.49987 48.828 48.572 49.072 -5.8653 82 30 4 0 0 0 0.028712 2 34740 34609;34740 56.048 33.596 1 59278000 40977 3797;14661 27261 27914 48115;48116 48116 -0.03520260317850443 MPVGPAPGM 9 Unmodified _MPVGPAPGM_ 0 0 0 ENSG00000124562|ENST00000244520|SNRPC;ENST00000505417.1_1_4:9585568-9585742:-|nuORF;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC;ENST00000514820.1_1_3:129918586-129918748:+|nuORF ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 856.4060668945312 1 856.405557 855.398281 0.58292 0.00049921 -0.40959 -0.00035077 0.17333 0.00014844 856.4056810378411 54.708 0.42154 48.843 48.607 49.029 -5.8653 52 25 3 0 0 0 0.0030119 2 34747 34611;34747 126.6 94.146 1 27653000 40978 3797;14661 27261 27914 48117;48118 48118 -0.03520260317850443 MPVGPDAILRY 11 Oxidation (M) _M(Oxidation (M))PVGPDAILRY_ M(1)PVGPDAILRY M(50)PVGPDAILRY 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.3267822265625 2 624.326273 1246.63799 0.26805 0.00016735 0.67979 0.00042441 0.94784 0.00059176 624.3267842518242 58.67 0.41133 58.67 58.441 58.853 0 45 17 3 0 0 0 0.056311 2 32709 32611;32709 49.527 30.27 1 5892600 40979 10287 27262 27915 48119;48120 48120 1672 0.024540128341413947 MPVGPDAILRY 11 Oxidation (M) _M(Oxidation (M))PVGPDAILRY_ M(1)PVGPDAILRY M(72)PVGPDAILRY 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.3267822265625 2 624.326273 1246.63799 0.2173 0.00013566 0.088001 5.4941E-05 0.3053 0.00019061 624.3264882366639 59.262 0.6562 58.772 58.432 59.089 -0.49079 134 30 6 0 0 0 0.0071133 3 32107 32107;32211;32317 71.708 54.595 1 111510000 40980 10287 27262 27915 48121;48122;48123 48121 1672 0.024540128341413947 MPVGPDAILRY 11 Oxidation (M) _M(Oxidation (M))PVGPDAILRY_ M(1)PVGPDAILRY M(62)PVGPDAILRY 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.3262939453125 2 624.326273 1246.63799 0.6844 0.00042729 -0.089178 -5.5676E-05 0.59522 0.00037161 624.3262834166937 58.897 0.57971 58.837 58.526 59.105 -0.060719 95 28 4 0 0 0 0.01584 3 32169 31963;32066;32169 61.602 42.345 1 42029000 40981 10287 27262 27915 48124;48125;48126 48126 1672 0.024540128341413947 MPVGPDAILRY 11 Oxidation (M) _M(Oxidation (M))PVGPDAILRY_ M(1)PVGPDAILRY M(74)PVGPDAILRY 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3259887695312 2 624.326273 1246.63799 0.82456 0.00051479 0.0079513 4.9642E-06 0.83251 0.00051976 624.3265252227184 64.815 1.0173 58.64 58.167 59.184 -6.1757 186 56 5 0 0 0 0.0056475 5 42320 41776;41908;42037;42171;42320 74.2 57.087 1 240280000 40982 10287 27262 27915 48127;48128;48129;48130;48131 48131 1672 0.024540128341413947 MPVGPDAILRY 11 Unmodified _MPVGPDAILRY_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8306274414062 2 616.328816 1230.64308 0.54311 0.00033473 -0.55405 -0.00034147 -0.010941 -6.7429E-06 616.3286867430232 67.22 0.45926 66.738 66.504 66.963 -0.48218 67 20 4 0 0 0 0.06459 2 36640 36640;36741 47.732 30.619 1 15074000 40983 10287 27262 27916 48132;48133 48132 0.03698316696772963 MPVGPDAILRY 11 Unmodified _MPVGPDAILRY_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3303833007812 2 616.328816 1230.64308 NaN NaN NaN NaN NaN NaN NaN 67.448 1 66.966 66.466 67.466 -0.48218 0 0 0 0.63856 1 36847 36847 19.362 1.2156 1 40984 10287 27262 27916 48134 48134 0.03698316696772963 MPVGPDAILRY 11 Unmodified _MPVGPDAILRY_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.329345703125 2 616.328816 1230.64308 1.0624 0.00065481 -0.74746 -0.00046068 0.31498 0.00019413 616.3284091771159 66.718 0.49897 66.728 66.5 66.999 0.0095596 70 23 4 0 0 0 0.0086238 2 36660 36556;36660 69.338 52.225 1 25019000 40985 10287 27262 27916 48135;48136 48136 0.03698316696772963 MPVGPDAILRY 11 Unmodified _MPVGPDAILRY_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3291625976562 2 616.328816 1230.64308 0.82914 0.00051102 -0.38454 -0.000237 0.4446 0.00027402 616.3288567198839 74.67 1.8655 68.495 67.922 69.787 -6.1757 339 99 5 0 0 0 1.3203E-08 9 49399 48549;48667;48789;48915;49035;49155;49277;49399;49523 107.1 70.973 1 231270000 40986 10287 27262 27916 48137;48138;48139;48140;48141;48142;48143;48144;48145 48144 0.03698316696772963 MPVGRFQTF 9 Oxidation (M) _M(Oxidation (M))PVGRFQTF_ M(1)PVGRFQTF M(96)PVGRFQTF 0 0 1 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7740478515625 2 549.773677 1097.5328 0.58835 0.00032346 0.26143 0.00014373 0.84979 0.00046719 549.774002727606 43.072 0.30115 43.057 42.843 43.144 -0.015667 33 13 3 0 0 0 0.0082485 1 23021 23021 96.285 42.709 1 7965800 40987 2928 27263 27917 48146 48146 505 -0.012064835716046218 MPVGRFQTF 9 Oxidation (M) _M(Oxidation (M))PVGRFQTF_ 0 0 1 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.773677 1097.5328 0.20051 0.00011024 0.68572 0.00037699 0.88623 0.00048723 549.7742215513916 43.387 0.061646 43.077 43.025 43.086 -0.31039 0.010077 0.00045283 NaN 96.285 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 4350500 40988 2928 27263 27917 505 -0.012064835716046218 MPVHMVPTEL 10 2 Oxidation (M) _M(Oxidation (M))PVHM(Oxidation (M))VPTEL_ M(1)PVHM(1)VPTEL M(64)PVHM(64)VPTEL 0 0 2 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.285888671875 2 593.28576 1184.55697 0.14804 8.7828E-05 -0.86597 -0.00051377 -0.71793 -0.00042594 593.7859987040832 38.161 0.23653 38.161 37.947 38.184 0 27 11 3 0 0 0 0.037795 1 20297 20297 64.236 31.931 1 6787300 40989 3922;3283;1109;464 27264 27918 48147 48147 62;63 -0.027930112001968155 MPVLEQSVL 9 Oxidation (M) _M(Oxidation (M))PVLEQSVL_ M(1)PVLEQSVL M(51)PVLEQSVL 0 0 1 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2754516601562 2 516.275718 1030.53688 0.54791 0.00028287 -1.2284 -0.00063422 -0.68054 -0.00035134 516.275170830346 57.606 0.70774 57.606 57.395 58.103 0 59 32 3 0 0 0 0.038285 2 32030 32030;32133 50.855 20.348 1 16905000 40990 3922;1109 27265 27919 48148;48149 48148 184 0.022835611314576454 MPVLEQSVL 9 Unmodified _MPVLEQSVL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2783203125 2 508.27826 1014.54197 0.14299 7.2677E-05 1.0187 0.00051779 1.1617 0.00059046 508.27863186596153 70.531 0.2838 70.531 70.377 70.661 0 19 11 2 0 0 0 0.30562 1 39271 39271 16.942 16.942 1 865890 40991 3922;1109 27265 27920 48150 48150 0.03527864994077845 MPVLEQSVL 9 Unmodified _MPVLEQSVL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2780151367188 2 508.27826 1014.54197 0.15297 7.775E-05 0.77258 0.00039269 0.92555 0.00047044 508.2785100766782 71.01 0.33687 70.533 70.368 70.705 -0.47735 28 14 3 0 0 0 0.16226 1 38838 38838 26.884 6.43 1 1884500 40992 3922;1109 27265 27920 48151 48151 0.03527864994077845 MPVLEQSVL 9 Unmodified _MPVLEQSVL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2786254882812 2 508.27826 1014.54197 0.35858 0.00018226 -0.30807 -0.00015659 0.050506 2.5671E-05 508.27858450693554 78.748 0.69243 72.572 72.238 72.93 -6.1757 89 41 3 0 0 0 0.06187 3 51469 51469;51607;51736 42.095 9.9776 1 30317000 40993 3922;1109 27265 27920 48152;48153;48154 48152 0.03527864994077845 MPVLEQSVL 9 Unmodified _MPVLEQSVL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000073614|P29375-2|KDM5A;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.27826 1014.54197 0.14299 7.2677E-05 1.0187 0.00051779 1.1617 0.00059046 508.27863186596153 70.531 0.2838 70.531 70.377 70.661 0 -0.0012204 0.00015503 NaN 26.884 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 865890 40994 3922;1109 27265 27920 0.03527864994077845 MPVLGFGTY 9 Oxidation (M) _M(Oxidation (M))PVLGFGTY_ M(1)PVLGFGTY M(43)PVLGFGTY 0 0 1 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;nc|ENSG00000264006|Q5T2L2|AKR1C8;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000264006|ENST00000648824|AKR1C8 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7443237304688 2 500.744053 999.473554 0.5075 0.00025413 0.43205 0.00021634 0.93955 0.00047047 500.7442856926306 68.342 0.27793 68.368 68.241 68.519 0.025146 27 13 3 0 0 0 0.058206 1 37563 37563 42.968 32.785 1 2583100 40995 9767;6130;10113 27266 27921 48155 48155 1092 -0.026203795857782097 MPVLGFGTY 9 Unmodified _MPVLGFGTY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;nc|ENSG00000264006|Q5T2L2|AKR1C8;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000264006|ENST00000648824|AKR1C8 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.4852294921875 1 984.485916 983.478639 1.0212 0.0010053 -0.4119 -0.00040551 0.60925 0.0005998 984.4854717750045 88.793 0.37206 82.617 82.407 82.779 -6.1757 36 20 2 0 0 0 1.8861E-15 2 58493 58493;58613 189.49 157.38 1 16683000 40996 9767;6130;10113 27266 27922 48156;48157 48156 -0.0137607572315801 MPVLGFGTY 9 Unmodified _MPVLGFGTY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF;nc|ENSG00000264006|Q5T2L2|AKR1C8;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000264006|ENST00000648824|AKR1C8 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.746826171875 2 492.746596 983.478639 1.0036 0.00049451 0.16228 7.9963E-05 1.1659 0.00057447 492.746784353133 88.771 0.53334 82.595 82.349 82.882 -6.1757 58 29 3 0 0 0 0.058206 2 58629 58500;58629 42.968 28.386 1 28784000 40997 9767;6130;10113 27266 27922 48158;48159 48159 -0.0137607572315801 MPVLLIGY 8 Oxidation (M) _M(Oxidation (M))PVLLIGY_ M(1)PVLLIGY M(42)PVLLIGY 0 0 1 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 921.5125122070312 1 921.511402 920.504126 0.053983 4.9746E-05 0.40888 0.00037679 0.46286 0.00042654 921.5122119154317 78.941 0.33633 78.455 78.238 78.574 -0.48595 31 13 3 0 0 0 0.42709 1 43172 43172 41.817 17.607 1 1977700 40998 6212 27267 27923 48160 48160 1106 0.040693987992654 MPVLLIGY 8 Oxidation (M) _M(Oxidation (M))PVLLIGY_ M(1)PVLLIGY M(42)PVLLIGY 0 0 1 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 921.509765625 1 921.511402 920.504126 0.5105 0.00047043 -1.5712 -0.0014479 -1.0607 -0.00097742 921.509504111637 77.842 0.24316 77.894 77.819 78.063 0.052444 12 9 2 0 0 0 0.42709 1 43038 43038 41.817 17.607 1 1319700 40999 6212 27267 27923 48161 48161 1106 0.040693987992654 MPVLLIGY 8 Oxidation (M) _M(Oxidation (M))PVLLIGY_ M(1)PVLLIGY M(42)PVLLIGY 0 0 1 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 921.511474609375 1 921.511402 920.504126 0.61301 0.00056489 1.1454 0.0010555 1.7584 0.0016204 921.5115561498824 78.425 0.28297 78.478 78.249 78.532 0.052452 17 11 2 0 0 0 0.42709 1 43255 43255 41.817 17.607 1 1902200 41000 6212 27267 27923 48162 48162 1106 0.040693987992654 MPVLLIGY 8 Unmodified _MPVLLIGY_ 0 0 0 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2630615234375 2 453.261882 904.509211 1.3877 0.00062898 0.081058 3.674E-05 1.4687 0.00066572 453.26290930464637 100.05 0.14673 93.875 93.792 93.938 -6.1757 21 9 3 0 0 0 0.61999 1 66843 66843 24.21 0 1 21367000 41001 6212 27267 27924 48163 48163 0.053137026618856 MPVLTAPQL 9 Oxidation (M) _M(Oxidation (M))PVLTAPQL_ M(1)PVLTAPQL M(47)PVLTAPQL 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2731628417969 2 493.272978 984.531403 NaN NaN NaN NaN NaN NaN NaN 61.658 1 61.17 60.67 61.67 -0.48764 0 0 0 0.086291 1 33584 33584 46.921 23.772 1 41002 1000 27268 27925 48164 48164 164 0.03851882339642998 MPVLTAPQL 9 Oxidation (M) _M(Oxidation (M))PVLTAPQL_ M(1)PVLTAPQL M(47)PVLTAPQL 0 0 1 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 ENSG00000069248|ENST00000261396|NUP133 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2741394042969 2 493.272978 984.531403 NaN NaN NaN NaN NaN NaN NaN 62.15 1 61.662 61.162 62.162 -0.48764 0 0 0 0.086291 1 33858 33858 46.921 18.434 1 41003 1000 27268 27925 48165 48165 164 0.03851882339642998 MPVMEQSVL 9 Unmodified _MPVMEQSVL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2568359375 2 517.256471 1032.49839 0.86778 0.00044886 -0.83289 -0.00043082 0.034891 1.8048E-05 517.2567133361459 70.07 0.35431 63.894 63.78 64.134 -6.1757 28 20 2 0 0 0 0.16226 1 45897 45897 26.884 3.7352 1 21680000 41004 3283 27269 27926 48166 48166 -0.01656067774706571 MPVMILTEF 9 Unmodified _MPVMILTEF_ 0 0 0 ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4 ENST00000487222.5_1_7:100401085-100421908:-|nuORF ENST00000487222.5_1_7:100401085-100421908:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2826538085938 2 540.777039 1079.53953 1.1609 0.00062781 1.889 0.0010215 3.0499 0.0016493 541.2804641367599 101.08 0.12521 94.906 94.831 94.956 -6.1757 14 6 3 0 0 0 0.3554 1 67753 67753 14.582 2.9414 1 37161000 41005 9813 27270 27927 48167 48167 0.002936932647571666 MPVNKVVQSF 10 Oxidation (M) _M(Oxidation (M))PVNKVVQSF_ M(1)PVNKVVQSF M(110)PVNKVVQSF 0 0 1 ENSG00000163872|ENST00000305135|YEATS2;ENST00000497765.1_1_3:183515808-183519351:+|nuORF ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8081665039062 2 582.807716 1163.60088 0.30769 0.00017932 -0.44486 -0.00025927 -0.13717 -7.9945E-05 582.8079582102437 40.894 0.40181 40.591 40.439 40.841 -0.30304 53 19 3 0 0 0 0.0023019 1 21607 21607 106.94 74.154 1 10415000 41006 7087 27271 27928 48168 48168 1217 0.02562341288398784 MPVNKVVQSF 10 Oxidation (M) _M(Oxidation (M))PVNKVVQSF_ M(1)PVNKVVQSF M(73)PVNKVVQSF 0 0 1 ENSG00000163872|ENST00000305135|YEATS2;ENST00000497765.1_1_3:183515808-183519351:+|nuORF ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8103637695312 2 582.807716 1163.60088 0.91219 0.00053163 -0.36046 -0.00021008 0.55172 0.00032155 582.8078428667786 40.713 0.28993 40.718 40.509 40.799 0.0050583 23 13 2 0 0 0 0.022967 1 21640 21640 72.968 55.855 1 2175400 41007 7087 27271 27928 48169 48169 1217 0.02562341288398784 MPVNTNQNF 9 Oxidation (M) _M(Oxidation (M))PVNTNQNF_ M(1)PVNTNQNF M(82)PVNTNQNF 0 0 1 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.74169921875 2 540.742573 1079.47059 -0.37404 -0.00020226 -0.75078 -0.00040598 -1.1248 -0.00060824 540.7422222562196 29.813 0.47263 29.813 29.564 30.036 0 60 28 3 0 0 0 0.0095811 2 15474 15369;15474 81.613 33.864 1 11105000 41008 4776 27272 27929 48170;48171 48171 868 -0.06596254710620997 MPVNTNQNF 9 Oxidation (M) _M(Oxidation (M))PVNTNQNF_ M(1)PVNTNQNF M(71)PVNTNQNF 0 0 1 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7418212890625 2 540.742573 1079.47059 0.73782 0.00039897 -2.2197 -0.0012003 -1.4819 -0.00080131 540.7421615400207 34.659 0.55034 30.564 30.348 30.898 -4.0951 74 32 3 0 0 0 0.013323 3 20045 19915;20045;20200 71.134 25.893 1 16465000 41009 4776 27272 27929 48172;48173;48174 48173 868 -0.06596254710620997 MPVNTNQNF 9 Unmodified _MPVNTNQNF_ 0 0 0 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.745361328125 2 532.745116 1063.47568 0.51776 0.00027583 3.7881 0.0020181 4.3059 0.0022939 532.7451968588074 46.188 0.53505 41.233 40.908 41.443 -4.9549 85 35 3 0 0 0 0.28023 1 28375 28375 18.146 1.0335 1 82070000 41010 4776 27272 27930 48175 48175 -0.053519508479894284 MPVNTNQNFY 10 Oxidation (M) _M(Oxidation (M))PVNTNQNFY_ M(1)PVNTNQNFY M(72)PVNTNQNFY 0 0 1 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2761840820312 2 622.274238 1242.53392 0.63499 0.00039514 -0.14784 -9.1994E-05 0.48716 0.00030314 622.2743502612943 38.838 0.43598 38.838 38.66 39.096 0 47 19 3 0 0 0 0.024115 2 20733 20733;20857 71.922 52.665 1 3832900 41011 4776 27273 27931 48176;48177 48176 868 -0.07764313993379801 MPVPGHDVEAY 11 Unmodified _MPVPGHDVEAY_ 0 0 0 ENST00000495205.1_1_1:201114427-201123087:-|nuORF;ENSG00000116857|ENST00000367330|TMEM9 ENST00000495205.1_1_1:201114427-201123087:-|nuORF ENST00000495205.1_1_1:201114427-201123087:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 607.77978515625 2 607.779156 1213.54376 NaN NaN NaN NaN NaN NaN NaN 46.12 1 41.165 40.665 41.665 -4.9549 0 0 0 0.016898 1 28434 28434 62.573 39.836 1 41012 3262 27274 27932 48178 48178 -0.05447125987961954 MPVPTTPEF 9 Unmodified _MPVPTTPEF_ 0 0 0 nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7500305175781 2 509.749336 1017.48412 0.8698 0.00044338 0.66615 0.00033957 1.536 0.00078295 509.7495876430881 71.96 0.38288 65.784 65.619 66.002 -6.1757 51 20 3 0 0 0 0.078417 2 47032 47032;47175 38.151 18.712 1 79636000 41013 4924 27275 27933 48179;48180 48179 -0.02392396931361418 MPVPTTPEF 9 Oxidation (M) _M(Oxidation (M))PVPTTPEF_ M(1)PVPTTPEF M(51)PVPTTPEF 0 0 1 nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 MSMS AL20221201_MKP_PDAC_01 4 517.7464599609375 2 517.746793 1033.47903 NaN NaN NaN NaN NaN NaN NaN 60.359 1 54.245 53.745 54.745 -6.1147 0 0 0 0.071041 1 38834 38834 50.855 16.753 1 41014 4924 27275 27934 48181 48181 898 -0.036367007939816176 MPVREPERY 9 Unmodified _MPVREPERY_ 0 0 0 ENST00000453368.1_1_2:26799001-26801669:+|nuORF;ENST00000479453.1_1_2:26798863-26800497:+|nuORF;ENSG00000173557|ENST00000329615|FAM166C ENST00000453368.1_1_2:26799001-26801669:+|nuORF ENST00000453368.1_1_2:26799001-26801669:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.865478515625 3 392.865852 1175.57573 0.59457 0.00023358 2.6186 0.0010288 3.2132 0.0012623 392.8658314257059 26.371 0.33771 23.42 23.281 23.619 -2.9511 48 17 4 0 0 0 0.21643 1 14496 14496 20.581 9.0631 1 17628000 41015 8338 27276 27935 48182 48182 -0.005037135141719773 MPVREPERY 9 Unmodified _MPVREPERY_ 0 0 0 ENST00000453368.1_1_2:26799001-26801669:+|nuORF;ENST00000479453.1_1_2:26798863-26800497:+|nuORF;ENSG00000173557|ENST00000329615|FAM166C ENST00000453368.1_1_2:26799001-26801669:+|nuORF ENST00000453368.1_1_2:26799001-26801669:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.865852 1175.57573 -0.34855 -0.00013693 0.10507 4.1279E-05 -0.24347 -9.5652E-05 392.86605698402013 23.326 0.18435 23.326 23.243 23.427 0 -0.047009 -0.00094894 NaN 20.581 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 775450 41016 8338 27276 27935 -0.005037135141719773 MPVRGPDVEAY 11 Oxidation (M) _M(Oxidation (M))PVRGPDVEAY_ M(1)PVRGPDVEAY M(81)PVRGPDVEAY 0 0 1 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.798828125 2 625.297713 1248.58087 -0.46055 -0.00028798 -0.86234 -0.00053922 -1.3229 -0.0008272 625.2974534154619 34.055 0.42448 34.055 33.822 34.247 0 80 21 5 0 0 0 0.0018376 2 17825 17825;17934 80.676 47.89 1 144630000 41017 8513 27277 27936 48183;48184 48183 1444 -0.03347454442200615 MPVRGPDVEAY 11 Oxidation (M) _M(Oxidation (M))PVRGPDVEAY_ M(1)PVRGPDVEAY M(42)PVRGPDVEAY 0 0 1 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2979125976562 2 625.297713 1248.58087 -0.3733 -0.00023342 -0.20062 -0.00012544 -0.57391 -0.00035887 625.297854087214 34.247 0.3095 34.055 33.865 34.174 -0.19131 28 11 3 0 0 0 0.10142 1 17853 17853 42.312 30.818 1 2275300 41018 8513 27277 27936 48185 48185 1444 -0.03347454442200615 MPVRGPDVEAY 11 Oxidation (M) _M(Oxidation (M))PVRGPDVEAY_ M(1)PVRGPDVEAY M(63)PVRGPDVEAY 0 0 1 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2979736328125 2 625.297713 1248.58087 0.4436 0.00027738 -0.55481 -0.00034692 -0.11121 -6.954E-05 625.2976815840066 38.896 0.51152 34.445 34.223 34.734 -4.4509 106 32 4 0 0 0 0.014324 3 23073 22896;22945;23073 63.227 41.691 1 92826000 41019 8513 27277 27936 48186;48187;48188 48188 1444 -0.03347454442200615 MPVRGPDVEAY 11 Unmodified _MPVRGPDVEAY_ 0 0 0 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.800537109375 2 617.300255 1232.58596 -0.12119 -7.4808E-05 -1.7436 -0.0010763 -1.8648 -0.0011512 617.2996577476557 40.889 0.23383 40.889 40.79 41.024 0 45 29 2 0 0 0 0.083469 1 21995 21995 44.392 32.151 1 10139000 41020 8513 27277 27937 48189 48189 -0.021031505795917838 MPVRGPDVEAY 11 Unmodified _MPVRGPDVEAY_ 0 0 0 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3007202148438 2 617.300255 1232.58596 0.11319 6.9874E-05 0.02108 1.3013E-05 0.13427 8.2887E-05 617.3004849182258 41.322 0.18085 41.019 40.909 41.09 -0.30304 19 8 3 0 0 0 0.31498 1 21875 21875 25.997 15.847 1 3620300 41021 8513 27277 27937 48190 48190 -0.021031505795917838 MPVRGPDVEAY 11 Unmodified _MPVRGPDVEAY_ 0 0 0 ENSG00000175348|ENST00000534025|TMEM9B;nc|ENSG00000175348|Q9NQ34-2|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.301025390625 2 617.300255 1232.58596 0.54883 0.00033879 -0.30317 -0.00018714 0.24566 0.00015165 617.3003248743337 47.072 0.48536 41.992 41.772 42.257 -5.0805 137 45 4 0 0 0 2.5626E-06 3 29024 29024;29155;29281 100.71 52.96 1 207430000 41022 8513 27277 27937 48191;48192;48193 48191 -0.021031505795917838 MPVRPGQLF 9 Oxidation (M) _M(Oxidation (M))PVRPGQLF_ M(1)PVRPGQLF M(71)PVRPGQLF 0 0 1 nc|ENSG00000006118|Q24JP5-3|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2850952148438 2 530.784044 1059.55354 0.62807 0.00033337 -0.13224 -7.0191E-05 0.49583 0.00026318 530.7840161391055 47.536 0.26018 47.497 47.34 47.6 -0.038643 23 11 3 0 0 0 0.013323 1 25601 25601 71.134 47.985 1 3806100 41023 328 27278 27938 48194 48194 35 0.026141068080505647 MPVSTMLVV 9 Unmodified _MPVSTMLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7644653320312 2 488.763932 975.51331 1.0363 0.00050649 0.52097 0.00025463 1.5572 0.00076113 488.7637357469855 87.623 0.36606 81.447 81.203 81.57 -6.1757 28 19 2 0 0 0 0.087258 1 57748 57748 36.044 14.298 1 11047000 41024 7922 27279 27939 48195 48195 0.024574240932906832 MPVSTRLVV 9 Oxidation (M) _M(Oxidation (M))PVSTRLVV_ M(1)PVSTRLVV M(56)PVSTRLVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2921752929688 2 509.291702 1016.56885 -0.12771 -6.5043E-05 0.1134 5.7752E-05 -0.014315 -7.2906E-06 509.2919129791895 42.849 0.29851 42.538 42.379 42.678 -0.31039 30 12 3 0 0 0 0.029718 1 22747 22747 55.503 24.234 1 11716000 41025 7922 27280 27940 48196 48196 1348 0.06122973605272364 MPVSTRLVV 9 Oxidation (M) _M(Oxidation (M))PVSTRLVV_ 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.291702 1016.56885 1.0599 0.0005398 0.21799 0.00011102 1.2779 0.00065082 509.291576906207 42.644 0.15327 42.644 42.565 42.718 0 0.16866 -4.6554E-05 NaN 55.503 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1334000 41026 7922 27280 27940 1348 0.06122973605272364 MPVSTRLVV 9 Unmodified _MPVSTRLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2943115234375 2 501.294245 1000.57394 -0.15084 -7.5616E-05 0.19107 9.5783E-05 0.040229 2.0167E-05 501.2942785633913 51.524 0.21737 51.47 51.361 51.578 -0.053871 12 10 2 0 0 0 0.40476 1 27912 27912 12.241 1.4167 1 2100700 41027 7922 27280 27941 48197 48197 0.07367277467881195 MPVSTRLVV 9 Unmodified _MPVSTRLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2948303222656 2 501.294245 1000.57394 1.1149 0.00055889 0.42192 0.00021151 1.5368 0.0007704 501.2945035619578 57.522 0.36833 51.495 51.313 51.681 -6.0275 44 19 3 0 0 0 0.021948 2 36736 36736;36868 61.602 28.816 1 28009000 41028 7922 27280 27941 48198;48199 48198 0.07367277467881195 MPVSTTLVV 9 Oxidation (M) _M(Oxidation (M))PVSTTLVV_ M(1)PVSTTLVV M(71)PVSTTLVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.524169921875 1 962.522695 961.515419 0.30369 0.00029231 -0.4052 -0.00039002 -0.10151 -9.7709E-05 962.5226603377091 54.893 0.41157 54.893 54.689 55.101 0 42 17 3 0 0 0 0.013472 2 30405 30405;30508 70.716 26.309 1 3457900 41029 7922 27281 27942 48200;48201 48200 1349 0.03312176102758713 MPVSTTLVV 9 Oxidation (M) _M(Oxidation (M))PVSTTLVV_ M(1)PVSTTLVV M(64)PVSTTLVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7649230957031 2 481.764986 961.515419 0.44133 0.00021262 -1.476 -0.00071109 -1.0347 -0.00049847 481.76469825812325 54.915 0.57738 54.915 54.641 55.218 0 78 24 4 0 0 0 0.019979 2 30406 30406;30509 63.563 23.114 1 12987000 41030 7922 27281 27942 48202;48203 48202 1349 0.03312176102758713 MPVSTTLVV 9 Oxidation (M) _M(Oxidation (M))PVSTTLVV_ M(1)PVSTTLVV M(54)PVSTTLVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.76611328125 2 481.764986 961.515419 0.54264 0.00026143 -0.15018 -7.2349E-05 0.39247 0.00018908 481.76511979782043 55.414 0.47953 54.936 54.712 55.192 -0.47798 56 22 3 0 0 0 0.03327 2 29996 29996;30112 53.576 21.459 1 3779500 41031 7922 27281 27942 48204;48205 48204 1349 0.03312176102758713 MPVSTTLVV 9 Oxidation (M) _M(Oxidation (M))PVSTTLVV_ M(1)PVSTTLVV M(54)PVSTTLVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7651062011719 2 481.764986 961.515419 2.1202 0.0010215 -0.011729 -5.6506E-06 2.1085 0.0010158 481.76477884849703 62.695 0.58477 56.519 56.174 56.759 -6.1757 52 29 2 0 0 0 0.03327 2 40543 40418;40543 53.576 15.424 1 15575000 41032 7922 27281 27942 48206;48207 48207 1349 0.03312176102758713 MPVSTTLVV 9 Unmodified _MPVSTTLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7405090332031 2 473.767529 945.520504 0.18246 8.6446E-05 -0.16023 -7.591E-05 0.022237 1.0535E-05 473.76740316790244 66.081 0.13004 65.598 65.521 65.651 -0.48323 7 5 2 0 0 0 0.18521 1 36066 36066 16.942 8.349 1 1343500 41033 7922 27281 27943 48208 48208 0.045564799653675436 MPVSTTLVV 9 Unmodified _MPVSTTLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.5266723632812 1 946.527781 945.520504 0.50673 0.00047964 -2.268 -0.0021468 -1.7613 -0.0016671 946.5262040017262 72.025 0.1742 65.849 65.745 65.919 -6.1757 16 9 2 0 0 0 0.010877 1 47172 47172 77.984 24.409 1 17035000 41034 7922 27281 27943 48209 48209 0.045564799653675436 MPVSTTLVV 9 Unmodified _MPVSTTLVV_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.768310546875 2 473.767529 945.520504 0.99425 0.00047104 -0.088603 -4.1977E-05 0.90565 0.00042907 473.76765552570026 72.018 0.50607 65.842 65.714 66.22 -6.1757 56 26 3 0 0 0 0.03327 2 47218 47218;47329 53.576 6.6547 1 37194000 41035 7922 27281 27943 48210;48211 48210 0.045564799653675436 MPVSTTPVV 9 Oxidation (M) _M(Oxidation (M))PVSTTPVV_ M(1)PVSTTPVV M(44)PVSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7494506835938 2 473.749336 945.484119 0.31948 0.00015135 -0.13207 -6.2568E-05 0.18741 8.8783E-05 473.7492028137483 39.5 0.54892 39.5 39.263 39.812 0 68 26 4 0 0 0 0.052168 1 21096 21096 44.407 21.259 1 12639000 41036 7922 27282 27944 48212 48212 1350 0.009196030686553058 MPVSTTPVV 9 Oxidation (M) _M(Oxidation (M))PVSTTPVV_ M(1)PVSTTPVV M(64)PVSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7493286132812 2 473.749336 945.484119 NaN NaN NaN NaN NaN NaN NaN 39.573 1 39.573 39.073 40.073 0 0 0 0 0.036587 1 21217 21217 63.563 33.338 1 41037 7922 27282 27944 48213 48213 1350 0.009196030686553058 MPVSTTPVV 9 Oxidation (M) _M(Oxidation (M))PVSTTPVV_ M(1)PVSTTPVV M(47)PVSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7496643066406 2 473.749336 945.484119 NaN NaN NaN NaN NaN NaN NaN 39.754 1 39.754 39.254 40.254 0 0 0 0 0.086291 1 21328 21328 46.921 23.772 1 41038 7922 27282 27944 48214 48214 1350 0.009196030686553058 MPVSTTPVV 9 Oxidation (M) _M(Oxidation (M))PVSTTPVV_ M(1)PVSTTPVV M(54)PVSTTPVV 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20221201_MKP_PDAC_01 4 473.7492065429688 2 473.749336 945.484119 NaN NaN NaN NaN NaN NaN NaN 46.409 1 41.329 40.829 41.829 -5.0805 0 0 0 0.060495 1 28658 28658 53.576 19.473 1 41039 7922 27282 27944 48215 48215 1350 0.009196030686553058 MPVTYKDPAY 10 Oxidation (M) _M(Oxidation (M))PVTYKDPAY_ M(1)PVTYKDPAY M(64)PVTYKDPAY 0 0 1 ENST00000455300.1_1_X:53852417-53852804:+|nuORF;ENSG00000163319|ENST00000295491|MRPS18C ENST00000455300.1_1_X:53852417-53852804:+|nuORF ENST00000455300.1_1_X:53852417-53852804:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7883911132812 2 600.783907 1199.55326 -0.71316 -0.00042846 3.9779 0.0023899 3.2647 0.0019614 600.7868613507469 30.629 0.2474 30.629 30.524 30.771 0 31 11 4 0 0 0 0.038363 1 15916 15916 63.961 44.704 1 4388100 41040 6976 27283 27945 48216 48216 1202 -0.03853357702473659 MPVTYKDPAY 10 Oxidation (M) _M(Oxidation (M))PVTYKDPAY_ M(1)PVTYKDPAY M(55)PVTYKDPAY 0 0 1 ENST00000455300.1_1_X:53852417-53852804:+|nuORF;ENSG00000163319|ENST00000295491|MRPS18C ENST00000455300.1_1_X:53852417-53852804:+|nuORF ENST00000455300.1_1_X:53852417-53852804:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7849731445312 2 600.783907 1199.55326 0.29225 0.00017558 0.75932 0.00045618 1.0516 0.00063176 600.7845358133668 34.895 0.20116 30.799 30.668 30.869 -4.0951 15 11 2 0 0 0 0.061704 1 20190 20190 55.235 28.967 1 4601100 41041 6976 27283 27945 48217 48217 1202 -0.03853357702473659 MPVTYKDPAY 10 Unmodified _MPVTYKDPAY_ 0 0 0 ENST00000455300.1_1_X:53852417-53852804:+|nuORF;ENSG00000163319|ENST00000295491|MRPS18C ENST00000455300.1_1_X:53852417-53852804:+|nuORF ENST00000455300.1_1_X:53852417-53852804:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 592.7849731445312 2 592.78645 1183.55835 NaN NaN NaN NaN NaN NaN NaN 43.35 1 38.585 38.085 39.085 -4.7648 0 0 0 0.3347 1 26321 26321 40.239 23.126 1 41042 6976 27283 27946 48218 48218 -0.026090538398420904 MPVVAGAVFTL 11 Unmodified _MPVVAGAVFTL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.811279296875 2 552.809728 1103.6049 1.1837 0.00065438 0.79009 0.00043677 1.9738 0.0010912 552.810623221892 100.3 0.15706 94.126 94.044 94.202 -6.1757 15 9 2 0 0 0 0.061759 1 67060 67060 48.346 3.9388 1 50358000 41043 6396 27284 27947 48219 48219 0.05724430782129275 MPVVTSEASTL 11 Oxidation (M) _M(Oxidation (M))PVVTSEASTL_ M(1)PVVTSEASTL M(59)PVVTSEASTL 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7882690429688 2 575.786647 1149.55874 0.75629 0.00043546 -1.2613 -0.00072625 -0.50502 -0.00029079 575.785487731295 43.038 0.25296 43.038 42.909 43.162 0 20 12 2 0 0 0 0.018566 2 23408 23303;23408 58.679 40.532 1 12883000 41044 7922 27285 27948 48220;48221 48221 1351 -0.010056789106556607 MPVWYIMDEF 10 Unmodified _MPVWYIMDEF_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.7950439453125 2 665.79596 1329.57737 0.43411 0.00028903 0.34435 0.00022927 0.77846 0.0005183 665.7959934128528 101.63 0.068352 95.451 95.414 95.483 -6.1757 6 3 2 0 0 0 0.53722 1 68218 68218 16.942 6.8684 1 9904000 41045 1790 27286 27949 48222 48222 -0.07423840540445781 MPWYKFDENY 10 Oxidation (M) _M(Oxidation (M))PWYKFDENY_ M(1)PWYKFDENY M(89)PWYKFDENY 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.7966918945312 2 704.797546 1407.58054 -0.76007 -0.0005357 -0.5923 -0.00041745 -1.3524 -0.00095315 704.7975153726471 56.151 0.37238 55.666 55.414 55.787 -0.48554 40 18 3 0 0 0 0.0090596 1 30470 30470 89.401 83.669 1 8561700 41046 8856 27287 27950 48223 48223 1492 -0.10694874162072665 MPWYKFDENY 10 Unmodified _MPWYKFDENY_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 697.3030395507812 2 696.800088 1391.58562 0.25743 0.00017938 0.32674 0.00022767 0.58418 0.00040705 696.8004342978676 63.603 0.32585 63.117 62.948 63.274 -0.48617 32 14 3 0 0 0 0.24625 1 34660 34660 30.637 26.307 1 2743000 41047 8856 27287 27951 48224 48224 -0.09450570299441097 MPWYKFDENY 10 Unmodified _MPWYKFDENY_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 696.7999877929688 2 696.800088 1391.58562 0.40543 0.0002825 0.16104 0.00011222 0.56647 0.00039472 697.301792533983 72.799 1.1057 66.623 66.22 67.326 -6.1757 133 55 3 0 0 0 1.0182E-10 5 47625 47513;47625;47747;47867;47996 155.95 131.35 1 35314000 41048 8856 27287 27951 48225;48226;48227;48228;48229 48226 -0.09450570299441097 MPWYKFDENY 10 Unmodified _MPWYKFDENY_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 696.800088 1391.58562 0.45658 0.00031814 -0.024171 -1.6842E-05 0.43241 0.0003013 696.8000446196718 63.141 0.2134 63.12 63.008 63.222 -0.021614 0.0012834 -0.00037935 NaN 30.637 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2555000 41049 8856 27287 27951 -0.09450570299441097 MPYACKLLF 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))PYAC(Carbamidomethyl (C))KLLF_ MPYAC(1)KLLF M(1)PYACKLLF MPYAC(71)KLLF M(71)PYACKLLF 0 1 1 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7880249023438 2 579.787938 1157.56132 0.67324 0.00039034 -1.318 -0.00076414 -0.64473 -0.0003738 579.787431687164 61.818 0.29716 61.785 61.629 61.926 -0.032787 39 14 4 0 0 0 0.013323 1 33738 33738 71.134 40.909 1 7705500 41050 681 27288 27952 48230 48230 50 105 -0.011155019866691873 MPYACKLLF 9 Carbamidomethyl (C) _MPYAC(Carbamidomethyl (C))KLLF_ MPYAC(1)KLLF MPYAC(57)KLLF 0 1 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7904052734375 2 571.790481 1141.56641 1.0729 0.0006135 -0.90258 -0.00051609 0.17037 9.7415E-05 572.291293443462 83.661 1.143 77.485 76.731 77.874 -6.1757 86 60 2 0 0 0 0.026094 1 54776 54776 57.471 37.018 1 11039000 41051 681 27288 27953 48231 48231 50 0.0012880187591690628 MPYDSNRVVL 10 Oxidation (M) _M(Oxidation (M))PYDSNRVVL_ M(1)PYDSNRVVL M(51)PYDSNRVVL 0 0 1 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.30078125 2 605.300255 1208.58596 0.16811 0.00010176 0.91816 0.00055576 1.0863 0.00065752 605.3008925410603 46.041 0.22709 41.087 40.999 41.226 -4.9549 23 14 2 0 0 0 0.078742 1 28433 28433 51.415 30.962 1 8666900 41052 1181 27289 27954 48232 48232 198 -0.00999150579605157 MPYDTPVPGY 10 Oxidation (M) _M(Oxidation (M))PYDTPVPGY_ M(1)PYDTPVPGY M(67)PYDTPVPGY 0 0 1 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2538452148438 2 578.254982 1154.49541 0.22388 0.00012946 -1.2884 -0.00074502 -1.0645 -0.00061556 578.2543252674112 48.195 0.33454 48.195 47.978 48.313 0 37 16 3 0 0 0 0.031389 1 26422 26422 67.344 52.506 1 18025000 41053 1900;993 27290 27955 48233 48233 162 -0.07565619627871456 MPYDTPVPGY 10 Unmodified _MPYDTPVPGY_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2568359375 2 570.257525 1138.5005 -0.1374 -7.8355E-05 -0.63046 -0.00035952 -0.76786 -0.00043788 570.2568060906672 56.101 0.27316 56.101 55.953 56.227 0 26 12 3 0 0 0 0.092434 1 31193 31193 48.346 33.508 1 3475300 41054 1900;993 27290 27956 48234 48234 -0.06321315765239888 MPYDTPVPGY 10 Unmodified _MPYDTPVPGY_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2589111328125 2 570.257525 1138.5005 0.053637 3.0587E-05 1.3838 0.00078913 1.4375 0.00081972 570.2583444704926 56.831 0.27327 56.346 56.205 56.479 -0.48554 28 12 3 0 0 0 0.051739 1 30900 30900 57.471 40.529 1 2708200 41055 1900;993 27290 27956 48235 48235 -0.06321315765239888 MPYDTPVPGY 10 Unmodified _MPYDTPVPGY_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2571411132812 2 570.257525 1138.5005 1.3986 0.00079759 -0.41738 -0.00023802 0.98127 0.00055957 570.2574264233307 64.614 0.5662 58.438 58.132 58.699 -6.1757 79 31 3 0 0 0 0.037795 2 41762 41762;41892 64.236 38.837 1 56756000 41056 1900;993 27290 27956 48236;48237 48236 -0.06321315765239888 MPYGNLLDY 9 Unmodified _MPYGNLLDY_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2532958984375 2 543.252243 1084.48993 0.24905 0.0001353 0.83545 0.00045386 1.0845 0.00058916 543.2526253456577 75.891 0.24968 75.414 75.301 75.551 -0.47713 18 10 2 0 0 0 0.30562 1 41557 41557 16.942 2.3606 1 803110 41057 5491 27291 27957 48238 48238 -0.04893298419688108 MPYGNLLDY 9 Unmodified _MPYGNLLDY_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2509765625 2 543.252243 1084.48993 0.90028 0.00048908 -1.616 -0.0008779 -0.71573 -0.00038882 543.2514003862572 83.501 0.38216 77.325 77.146 77.528 -6.1757 32 19 2 0 0 0 0.06187 2 54897 54897;55027 42.095 23.96 1 14983000 41058 5491 27291 27957 48239;48240 48239 -0.04893298419688108 MPYGSLYNVL 10 Oxidation (M) _M(Oxidation (M))PYGSLYNVL_ M(1)PYGSLYNVL M(64)PYGSLYNVL 0 0 1 nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK nc|ENSG00000166333|Q13418-3|ILK nc|ENSG00000166333|Q13418-3|ILK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.787353515625 2 586.78645 1171.55835 0.64728 0.00037981 0.30092 0.00017658 0.9482 0.00055639 586.7866298896761 74.885 0.56357 74.408 74.042 74.605 -0.47664 42 23 2 0 0 0 0.037795 2 40935 40839;40935 64.236 34.012 1 4869600 41059 7471 27292 27958 48241;48242 48242 1286 -0.020570538398715144 MPYGSLYNVL 10 Oxidation (M) _M(Oxidation (M))PYGSLYNVL_ M(1)PYGSLYNVL M(64)PYGSLYNVL 0 0 1 nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK nc|ENSG00000166333|Q13418-3|ILK nc|ENSG00000166333|Q13418-3|ILK MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.78369140625 2 586.78645 1171.55835 0.5786 0.00033952 -2.2984 -0.0013487 -1.7198 -0.0010091 586.7853409349211 82 0.42506 75.825 75.618 76.043 -6.1757 45 23 2 0 0 0 0.037795 2 53760 53760;53889 64.236 39.562 1 18561000 41060 7471 27292 27958 48243;48244 48243 1286 -0.020570538398715144 MPYGSLYNVL 10 Unmodified _MPYGSLYNVL_ 0 0 0 nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK nc|ENSG00000166333|Q13418-3|ILK nc|ENSG00000166333|Q13418-3|ILK MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7886352539062 2 578.788992 1155.56343 1.0358 0.0005995 2.3263 0.0013465 3.3621 0.001946 579.2940417686347 92.291 0.70368 86.115 85.596 86.299 -6.1757 72 41 2 0 0 0 0.35903 1 60827 60827 24.021 9.1823 1 32387000 41061 7471 27292 27959 48245 48245 -0.00812749977239946 MPYLEHESF 9 Oxidation (M) _M(Oxidation (M))PYLEHESF_ M(1)PYLEHESF M(93)PYLEHESF 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7531127929688 2 584.752607 1167.49066 -0.34272 -0.0002004 0.43678 0.00025541 0.094059 5.5001E-05 584.7532540096897 40.775 0.27113 40.775 40.639 40.911 0 49 29 2 0 0 0 0.0082281 1 21924 21924 92.822 72.369 1 18317000 41062 1682 27293 27960 48246 48246 285 -0.08638503770657735 MPYLEHESF 9 Oxidation (M) _M(Oxidation (M))PYLEHESF_ M(1)PYLEHESF M(93)PYLEHESF 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7532958984375 2 584.752607 1167.49066 -0.4817 -0.00028167 0.38972 0.00022789 -0.091976 -5.3783E-05 584.7530900673725 41.085 0.32146 41.085 40.919 41.241 0 46 18 4 0 0 0 0.0082281 1 22091 22091 92.822 71.075 1 23684000 41063 1682 27293 27960 48247 48247 285 -0.08638503770657735 MPYLEHESF 9 Oxidation (M) _M(Oxidation (M))PYLEHESF_ M(1)PYLEHESF M(96)PYLEHESF 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MSMS AL20221201_MKP_PDAC_01 4 584.7534790039062 2 584.752607 1167.49066 NaN NaN NaN NaN NaN NaN NaN 46.026 1 41.071 40.571 41.571 -4.9549 0 0 0 0.0083389 1 28356 28356 96.285 62.182 1 41064 1682 27293 27960 48248 48248 285 -0.08638503770657735 MPYLEHESF 9 Oxidation (M) _M(Oxidation (M))PYLEHESF_ M(1)PYLEHESF M(120)PYLEHESF 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MSMS AL20221201_MKP_PDAC_01 4 584.753173828125 2 584.752607 1167.49066 NaN NaN NaN NaN NaN NaN NaN 46.286 1 41.331 40.831 41.831 -4.9549 0 0 0 0.020569 1 28559 28559 117.6 84.813 1 41065 1682 27293 27960 48249 48249 285 -0.08638503770657735 MPYLEHESF 9 Oxidation (M) _M(Oxidation (M))PYLEHESF_ 0 0 1 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.752607 1167.49066 0.0036625 2.1417E-06 0.77507 0.00045323 0.77873 0.00045537 584.7528121586856 41.232 0.18845 40.929 40.776 40.964 -0.30304 0.076861 0.00033088 NaN 92.822 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1331700 41066 1682 27293 27960 285 -0.08638503770657735 MPYLEHESF 9 Unmodified _MPYLEHESF_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7576904296875 2 576.755149 1151.49575 0.84391 0.00048673 0.34261 0.0001976 1.1865 0.00068433 576.7560650942116 51.402 0.29286 51.402 51.229 51.522 0 34 12 4 0 0 0 0.010877 1 28364 28364 77.984 53.964 1 8014800 41067 1682 27293 27961 48250 48250 -0.07394199908048904 MPYLEHESF 9 Unmodified _MPYLEHESF_ 0 0 0 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 ENSG00000097046|ENST00000234626|CDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7562866210938 2 576.755149 1151.49575 0.42861 0.0002472 -0.14202 -8.1909E-05 0.28659 0.00016529 576.7557022549078 51.955 0.21173 51.521 51.437 51.649 -0.43367 15 10 2 0 0 0 0.012148 1 28040 28040 74.423 56.276 1 3720500 41068 1682 27293 27961 48251 48251 -0.07394199908048904 MPYLSHQQL 9 Oxidation (M) _M(Oxidation (M))PYLSHQQL_ M(1)PYLSHQQL M(130)PYLSHQQL 0 0 1 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.776611328125 2 566.776416 1131.53828 -0.37721 -0.00021379 0.40492 0.0002295 0.027713 1.5707E-05 566.7769129113921 33.974 0.20106 33.974 33.864 34.065 0 16 9 2 0 0 0 0.0030184 1 17863 17863 126.57 90.439 1 4296400 41069 3763 27294 27962 48252 48252 664 -0.022228047797852923 MPYLSHQQL 9 Oxidation (M) _M(Oxidation (M))PYLSHQQL_ M(1)PYLSHQQL M(89)PYLSHQQL 0 0 1 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7772827148438 2 566.776416 1131.53828 -0.40347 -0.00022868 2.0484 0.001161 1.6449 0.00093231 566.7778485844653 34.269 0.28102 34.269 34.084 34.365 0 22 10 3 0 0 0 0.0086722 1 18039 18039 88.954 64.933 1 4356800 41070 3763 27294 27962 48253 48253 664 -0.022228047797852923 MPYLSHQQL 9 Oxidation (M) _M(Oxidation (M))PYLSHQQL_ 0 0 1 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 566.776416 1131.53828 -0.093518 -5.3004E-05 0.28967 0.00016418 0.19615 0.00011117 567.2781374846552 34.128 0.1779 33.936 33.843 34.02 -0.19131 -0.019112 -6.9319E-05 NaN 126.57 12 6 3 NaN NaN NaN NaN 0 NaN NaN 0 802370 41071 3763 27294 27962 664 -0.022228047797852923 MPYLSHQQL 9 Oxidation (M) _M(Oxidation (M))PYLSHQQL_ 0 0 1 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 566.776416 1131.53828 0.63502 0.00035991 3.9822 0.002257 4.6172 0.0026169 567.2809651071128 38.499 0.30899 34.13 33.948 34.257 -4.3689 -0.069651 0.0016003 NaN 88.954 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 6188900 41072 3763 27294 27962 664 -0.022228047797852923 MPYSHPSSY 9 Oxidation (M) _M(Oxidation (M))PYSHPSSY_ M(1)PYSHPSSY M(130)PYSHPSSY 0 0 1 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7235107421875 2 542.723849 1083.43315 -0.29082 -0.00015783 -0.69159 -0.00037534 -0.98241 -0.00053318 542.7235969585406 20.387 0.36737 20.387 20.106 20.473 0 120 42 3 0 0 0 0.0031966 2 10243 10147;10243 125.62 108.68 1 9540800 41073 7161 27295 27963 48254;48255 48255 1239 -0.10523345976207565 MPYSHPSSY 9 Oxidation (M) _M(Oxidation (M))PYSHPSSY_ M(1)PYSHPSSY M(55)PYSHPSSY 0 0 1 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7241821289062 2 542.723849 1083.43315 0.20051 0.00010882 0.46631 0.00025308 0.66682 0.0003619 542.7241005511268 22.801 0.37503 20.022 19.773 20.148 -2.7784 46 27 2 0 0 0 0.031062 1 12321 12321 54.774 41.266 1 5808100 41074 7161 27295 27963 48256 48256 1239 -0.10523345976207565 MPYSHPSSY 9 Unmodified _MPYSHPSSY_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.72802734375 2 534.726392 1067.43823 1.0644 0.00056919 0.010497 5.6133E-06 1.0749 0.0005748 534.7263788946439 30.626 0.30698 27.129 26.992 27.299 -3.497 22 14 2 0 0 0 0.0090851 1 17294 17294 85.357 56.87 1 23810000 41075 7161 27295 27964 48257 48257 -0.09279042113598734 MPYSHPSSY 9 Unmodified _MPYSHPSSY_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS AL20221201_MKP_PDAC_01 4 534.7269287109375 2 534.726392 1067.43823 NaN NaN NaN NaN NaN NaN NaN 30.806 1 27.309 26.809 27.809 -3.497 0 0 0 0.080768 1 17412 17412 48.346 31.404 1 41076 7161 27295 27964 48258 48258 -0.09279042113598734 MPYSHPSSY 9 Unmodified _MPYSHPSSY_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;ENST00000504430.5_1_5:36961623-36995905:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.726392 1067.43823 -0.40591 -0.00021705 1.4707 0.00078642 1.0648 0.00056937 534.7263364517745 27.078 0.12176 27.078 27.033 27.155 0 -0.025728 0.0014597 NaN 85.357 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2311600 41077 7161 27295 27964 -0.09279042113598734 MPYTRPVKF 9 Unmodified _MPYTRPVKF_ 0 0 0 nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2075805664062 3 380.207438 1137.60049 1.406 0.00053457 -0.16022 -6.0917E-05 1.2458 0.00047365 380.2074586950921 42.494 0.38931 37.81 37.592 37.982 -4.6846 32 25 2 0 0 0 0.29507 1 25620 25620 17.443 3.8278 1 14367000 41078 4345 27296 27965 48259 48259 0.03718966359178921 MQAVEQVI 8 Unmodified _MQAVEQVI_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2436218261719 2 459.241678 916.468803 1.1607 0.00053305 4.4769 0.002056 5.6376 0.002589 459.2442382986852 42.052 0.60657 37.367 36.937 37.544 -4.6846 82 38 3 0 0 0 0.64853 1 25259 25259 21.747 0 1 23309000 41079 7675 27297 27966 48260 48260 0.0072273627146159924 MQHRYIELF 9 Unmodified _MQHRYIELF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF;nc|ENSG00000096746|P31942-3|HNRNPH3;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-4|HNRNPH3;ENST00000469172.5_1_10:70098233-70101808:+|nuORF ENSG00000169813|ENST00000682386|HNRNPF;nc|ENSG00000096746|P31942-3|HNRNPH3 ENSG00000169813|ENST00000682386|HNRNPF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8772888183594 3 412.877981 1235.61211 NaN NaN NaN NaN NaN NaN NaN 19.798 1 19.826 19.326 20.326 0.028357 0 0 0 0.85798 1 10002 10002 0.23584 0 1 41080 7918;1676 27298 27967 48261 48261 0.003731633825282188 MQKHYFML 8 Unmodified _MQKHYFML_ 0 0 0 nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 nc|ENSG00000185792|Q7RTR0-2|NLRP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2736206054688 2 549.267173 1096.51979 -0.039285 -2.1578E-05 0.55756 0.00030625 0.51827 0.00028467 549.2675293915231 71.097 0.39829 71.097 70.895 71.293 0 59 18 5 0 0 0 0.80232 1 39565 39565 5.2307 1.6342 1 10180000 41081 9412 27299 27968 48262 48262 -0.02460637955346101 MQLEGLVLW 9 Unmodified _MQLEGLVLW_ 0 0 0 REV__ENST00000460627.5_1_3:184100608-184100992:+|nuORF REV__ENST00000460627.5_1_3:184100608-184100992:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2880249023438 2 544.794078 1087.5736 0.31742 0.00017293 -0.82242 -0.00044805 -0.505 -0.00027512 544.7937944606513 60.298 0.90157 60.255 59.806 60.708 -0.04351 163 46 5 0 0 0 0.39863 1 32667 32667 12.532 0.89125 1 429930000 + 41082 17862 27300 27969 48263 48263 0.03331857748003131 MQLEYEMWE 9 Unmodified _MQLEYEMWE_ 0 0 0 REV__ENSG00000146555|ENST00000404826|SDK1 REV__ENSG00000146555|ENST00000404826|SDK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.7600708007812 2 629.759575 1257.5046 NaN NaN NaN NaN NaN NaN NaN 90.561 1 90.561 90.061 91.061 0 0 0 0 0.85852 1 50101 50101 0.45834 0.057624 1 + 41083 20841 27301 27970 48264 48264 -0.11385594333842164 MQLIIPLPQF 10 Unmodified _MQLIIPLPQF_ 0 0 0 REV__ENST00000547526.1_1_12:57910914-57914246:-|nuORF REV__ENST00000547526.1_1_12:57910914-57914246:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.848876953125 2 600.346477 1198.6784 0.28607 0.00017174 2.3941 0.0014373 2.6802 0.001609 600.348369760863 68.842 0.24272 68.362 68.242 68.485 -0.48071 11 10 2 0 0 0 0.23896 1 37656 37656 3.5965 0 1 720090 + 41084 28671 27302 27971 48265 48265 0.08700979224568073 MQMQERDTL 9 Unmodified _MQMQERDTL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521480.1_1_8:39780074-39781137:+|nuORF;ENST00000253513.11_1_8:39780074-39782780:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2654418945312 2 576.262816 1150.51108 1.0065 0.00058002 2.9484 0.001699 3.9549 0.002279 576.2646202183662 35.033 0.42066 30.938 30.7 31.12 -4.0951 31 24 2 0 0 0 0.0087807 1 20261 20261 106.94 32.011 1 11095000 41085 4309 27303 27972 48266 48266 -0.058156563824695695 MQMQERDTL 9 2 Oxidation (M) _M(Oxidation (M))QM(Oxidation (M))QERDTL_ M(1)QM(1)QERDTL M(58)QM(58)QERDTL 0 0 2 ENSG00000131203|ENST00000518237|IDO1;ENST00000521480.1_1_8:39780074-39781137:+|nuORF;ENST00000253513.11_1_8:39780074-39782780:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 592.2575073242188 2 592.25773 1182.50091 NaN NaN NaN NaN NaN NaN NaN 19.613 1 16.957 16.457 17.457 -2.6564 0 0 0 0.049786 1 10404 10404 57.722 43.816 1 41086 4309 27303 27973 48267 48267 776;777 -0.08304264107687231 MQMQHIQRQ 9 Unmodified _MQMQHIQRQ_ 0 0 0 REV__ENSG00000165821|ENST00000537235|SALL2 REV__ENSG00000165821|ENST00000537235|SALL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2893676757812 2 600.292242 1198.56993 0.069082 4.147E-05 -1.1509 -0.0006909 -1.0819 -0.00064944 600.2918427028525 54.523 0.27407 48.658 48.607 48.881 -5.8653 26 16 2 0 0 0 0.30562 1 34604 34604 16.942 2.104 1 28761000 + 41087 22055 27304 27974 48268 48268 -0.0214113529750648 MQMSSLHNI 9 Unmodified _MQMSSLHNI_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2459716796875 2 530.749344 1059.48414 0.80066 0.00042495 -1.3791 -0.00073195 -0.57844 -0.00030701 530.7483741443909 45.952 0.56713 45.952 45.685 46.252 0 34 17 3 0 0 0 0.41742 1 25057 25057 11.64 0.81637 1 8860500 41088 3812 27305 27975 48269 48269 -0.043227202030038825 MQPRMFFLF 9 2 Oxidation (M) _M(Oxidation (M))QPRM(Oxidation (M))FFLF_ M(1)QPRM(1)FFLF M(55)QPRM(55)FFLF 0 0 2 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.799072265625 2 624.798837 1247.58312 0.6086 0.00038025 -1.0802 -0.0006749 -0.4716 -0.00029465 624.7981813228898 80.633 0.46812 80.691 80.495 80.963 0.057587 61 18 4 0 0 0 0.031062 2 44505 44505;44613 54.774 41.731 1 25377000 41089 8890 27306 27976 48270;48271 48270 1500;1501 -0.030766972380888546 MQPRMFFLF 9 2 Oxidation (M) _M(Oxidation (M))QPRM(Oxidation (M))FFLF_ M(1)QPRM(1)FFLF M(44)QPRM(44)FFLF 0 0 2 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.7986450195312 2 624.798837 1247.58312 1.2551 0.00078421 -0.32019 -0.00020005 0.93496 0.00058416 624.7986299393705 97.514 0.30396 91.338 91.117 91.421 -6.1757 30 16 2 0 0 0 0.05447 1 64558 64558 43.858 31.327 1 25866000 41090 8890 27306 27976 48272 48272 1500;1501 -0.030766972380888546 MQPRMFFLF 9 Oxidation (M) _MQPRM(Oxidation (M))FFLF_ MQPRM(1)FFLF M(-43)QPRM(43)FFLF 0 0 1 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.801513671875 2 616.80138 1231.58821 0.22388 0.00013809 0.61407 0.00037876 0.83794 0.00051684 616.8019004213384 99.098 0.20547 92.922 92.752 92.957 -6.1757 22 12 2 0 0 0 0.024882 1 65904 65904 58.679 39.317 2 35038000 41091 8890 27306 27977 48273 48273 1500;1501 -0.018323933754800237 MQPRMFFLF 9 Oxidation (M) _M(Oxidation (M))QPRMFFLF_ M(1)QPRMFFLF M(35)QPRM(-35)FFLF 0 0 1 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.8016357421875 2 616.80138 1231.58821 1.0874 0.00067073 -1.8189 -0.0011219 -0.73148 -0.00045118 616.8007064451649 100.04 0.17636 93.86 93.78 93.957 -6.1757 28 11 4 0 0 0 0.013323 1 66787 66787 71.134 32.958 2 79425000 41092 8890 27306 27977 48274 48274 1500;1501 -0.018323933754800237 MQPRMFFLF 9 Unmodified _MQPRMFFLF_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.80419921875 2 608.803922 1215.59329 0.84125 0.00051216 -1.105 -0.00067271 -0.26372 -0.00016056 608.8034663009341 100.73 0.15008 94.552 94.472 94.623 -6.1757 25 10 3 0 0 0 0.0095811 1 67427 67427 81.613 53.984 1 74436000 41093 8890 27306 27978 48275 48275 -0.005880895128711927 MQPSFWISF 9 Unmodified _MQPSFWISF_ 0 0 0 ENST00000490738.5_1_1:6931821-6931851:+|nuORF ENST00000490738.5_1_1:6931821-6931851:+|nuORF ENST00000490738.5_1_1:6931821-6931851:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.773193359375 2 571.770603 1141.52665 1.3547 0.0007746 -0.1054 -6.0263E-05 1.2493 0.00071434 571.7715557160997 101.12 0.085381 94.94 94.889 94.974 -6.1757 7 4 2 0 0 0 0.069655 1 67786 67786 43.858 13.222 1 21248000 41094 14265 27307 27979 48276 48276 -0.038450018031426225 MQQMRQRWMAS 11 Unmodified _MQQMRQRWMAS_ 0 0 0 REV__GOLGA2|p.W514Lfs*38|1|0.09|ENSG00000167110|chr9:128260601-128260602|-/A|frameshift_variant REV__GOLGA2|p.W514Lfs*38|1|0.09|ENSG00000167110|chr9:128260601-128260602|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.8338012695312 2 726.836491 1451.65843 0.28673 0.0002084 -1.0558 -0.0007674 -0.76908 -0.00055899 726.8355541109354 53.503 0.32645 53.051 52.878 53.205 -0.45173 22 15 2 0 0 0 0.6889 1 28983 28983 5.2969 0.39987 1 1941800 + 41095 22182 27308 27980 48277 48277 -0.04933463049337661 MQQSNLEPL 9 Unmodified _MQQSNLEPL_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENST00000431297.1_1_21:15134673-15136650:+|nuORF ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2604370117188 2 530.260599 1058.50665 0.56873 0.00030158 0.35293 0.00018715 0.92166 0.00048872 530.2606281254211 56.978 0.20931 56.978 56.855 57.064 0 14 8 2 0 0 0 0.30202 1 31717 31717 17.113 3.2068 1 1018200 41096 5383 27309 27981 48278 48278 -0.020267975337446842 MQSEPAAEI 9 Unmodified _MQSEPAAEI_ 0 0 0 REV__ENSG00000156973|ENST00000287600|PDE6D REV__ENSG00000156973|ENST00000287600|PDE6D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2258911132812 2 488.226225 974.437897 -0.6294 -0.00030729 0.79215 0.00038675 0.16275 7.9458E-05 488.22679333532506 32.053 0.36152 32.053 31.88 32.242 0 37 17 3 0 0 0 0.05447 1 16674 16674 43.858 0 1 3397900 + 41097 21356 27310 27982 48279 48279 -0.05034461833452042 MQSEPAAEI 9 Unmodified _MQSEPAAEI_ 0 0 0 REV__ENSG00000156973|ENST00000287600|PDE6D REV__ENSG00000156973|ENST00000287600|PDE6D MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2264404296875 2 488.226225 974.437897 1.2153 0.00059336 0.12956 6.3256E-05 1.3449 0.00065662 488.22648762900934 37.363 0.35669 33.079 32.857 33.213 -4.2835 32 20 2 0 0 0 0.1773 1 22012 22012 25.399 0 1 8717600 + 41098 21356 27310 27982 48280 48280 -0.05034461833452042 MQSEPAAEI 9 Unmodified _MQSEPAAEI_ 0 0 0 REV__ENSG00000156973|ENST00000287600|PDE6D REV__ENSG00000156973|ENST00000287600|PDE6D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.226225 974.437897 -0.6294 -0.00030729 0.79215 0.00038675 0.16275 7.9458E-05 488.22679333532506 32.053 0.36152 32.053 31.88 32.242 0 0 0 NaN 43.858 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3397900 + 41099 21356 27310 27982 -0.05034461833452042 MQSFLLMF 8 Unmodified _MQSFLLMF_ 0 0 0 REV__ENST00000399921.5_1_21:30698866-30698971:+|nuORF REV__ENST00000399921.5_1_21:30698866-30698971:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7512817382812 2 508.750824 1015.4871 0.21012 0.0001069 0.80166 0.00040785 1.0118 0.00051475 508.7513594923286 86.085 0.40218 85.582 85.343 85.745 -0.50318 37 15 3 0 0 0 0.80044 1 47137 47137 6.3541 0 1 1551500 + 41100 26589 27311 27983 48281 48281 -0.020028450781865104 MQYLREGY 8 Unmodified _MQYLREGY_ 0 0 0 ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2496948242188 2 530.250034 1058.48552 NaN NaN NaN NaN NaN NaN NaN 95.953 1 95.644 95.144 96.144 -0.30872 0 0 0 0.97444 1 52406 52406 2.8892 0 1 41101 7244 27312 27984 48282 48282 -0.04138762842603683 MQYVAMFTNI 10 Unmodified _MQYVAMFTNI_ 0 0 0 ENST00000252108.7_1_11:118268072-118268138:+|nuORF ENST00000252108.7_1_11:118268072-118268138:+|nuORF ENST00000252108.7_1_11:118268072-118268138:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2914428710938 2 609.288302 1216.56205 0.76796 0.00046791 1.7348 0.001057 2.5028 0.0015249 609.2895209636304 86.003 1.3719 79.828 79.062 80.434 -6.1757 174 78 3 0 0 0 0.095098 1 56253 56253 47.749 12.817 1 85089000 41102 11147 27313 27985 48283 48283 -0.03756707337606713 MRALNQDQEL 10 Unmodified _MRALNQDQEL_ 0 0 0 REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8708190917969 3 406.536283 1216.58702 1.1945 0.00048563 -0.46913 -0.00019072 0.72542 0.00029491 406.5361666652921 19.684 0.34045 17.028 16.898 17.239 -2.6564 48 22 3 0 0 0 0.60478 1 10407 10407 10.899 0.58372 1 3605500 + 41103 22043 27314 27986 48284 48284 -0.012609362106786648 MRALNQDQEL 10 Unmodified _MRALNQDQEL_ 0 0 0 REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B REV__nc|ENSG00000165702|Q5VTD9-2|GFI1B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.8708190917969 3 406.536283 1216.58702 1.1945 0.00048563 -0.46913 -0.00019072 0.72542 0.00029491 406.5361666652921 19.684 0.34045 17.028 16.898 17.239 -2.6564 48 22 3 0 0 0 0.23426 1 10407 10407 10.899 0.58372 1 3605500 + 41104 22043 27314 27986 48285 48285 -0.012609362106786648 MRDKERQYL 9 Unmodified _MRDKERQYL_ 0 0 0 REV__nc|ENSG00000019485|Q9NQV5|PRDM11 REV__nc|ENSG00000019485|Q9NQV5|PRDM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.549072265625 3 413.548523 1237.62374 0.36336 0.00015027 -0.04775 -1.9747E-05 0.31561 0.00013052 413.5485181686403 57.099 0.34653 56.613 56.453 56.799 -0.48554 46 15 4 0 0 0 0.59218 1 31105 31105 0.96228 0.18574 1 15160000 + 41105 29484 27315 27987 48286 48286 0.014433604058922356 MREHQELFH 9 Unmodified _MREHQELFH_ 0 0 0 REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B REV__nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.527587890625 3 409.529352 1225.56623 -0.42218 -0.0001729 -0.88298 -0.00036161 -1.3052 -0.0005345 409.52955574895515 19.904 0.3783 19.933 19.756 20.135 0.028357 60 20 4 0 0 0 0.61256 1 9998 9998 0.26902 0.033176 1 2684600 + 41106 18724 27316 27988 48287 48287 -0.03753481799708425 MRENFWKYFNS 11 Unmodified _MRENFWKYFNS_ 0 0 0 ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1 ENST00000579014.5_1_18:6942080-7042306:-|nuORF ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 761.3501586914062 2 761.350811 1520.68707 -0.0059639 -4.5406E-06 -0.51033 -0.00038854 -0.51629 -0.00039308 761.350368753937 86.873 0.59641 86.873 86.56 87.156 0 124 35 4 0 0 0 0.7187 1 48193 48193 2.4985 1.0166 1 6266800 41107 1986 27317 27989 48288 48288 -0.05244698876890652 MREQIEERSL 10 Unmodified _MREQIEERSL_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS AL20221201_MKP_PDAC_01 4 430.8887634277344 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 40.811 1 36.281 35.781 36.781 -4.5294 0 0 0 0.76313 1 24418 24418 8.4443 1.8209 1 + 41108 17684 27318 27990 48289 48289 0.006550218521169882 MRFCSEGDCAI 11 Unmodified _MRFCSEGDCAI_ 0 0 0 ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD ENSG00000059915|ENST00000020673|PSD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2477416992188 2 616.248851 1230.48315 NaN NaN NaN NaN NaN NaN NaN 38.219 1 38.219 37.719 38.719 0 0 0 0 0.93669 1 20398 20398 4.897 0.70751 1 41109 822 27319 27991 48290 48290 -0.1228730263419493 MRFFHWFSKWR 11 Unmodified _MRFFHWFSKWR_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.4093017578125 2 814.408798 1626.80304 NaN NaN NaN NaN NaN NaN NaN 55.569 1 55.569 55.069 56.069 0 0 0 0 0.9435 1 30874 30874 0 0 1 41110 10663 27320 27992 48291 48291 0.01471289484470617 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821105957031 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 27.576 1 27.576 27.076 28.076 0 0 0 0 1.0024 1 14212 14212 0.13989 0.04505 1 + 41111 28309 27321 27993 48292 48292 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825988769531 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 71.618 1 71.618 71.118 72.118 0 0 0 0 1.0024 1 39890 39890 0.13989 0 1 + 41112 28309 27321 27993 48293 48293 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8819274902344 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 80.114 1 80.114 79.614 80.614 0 0 0 0 1.0024 1 44489 44489 0.13989 0.04505 1 + 41113 28309 27321 27993 48294 48294 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822937011719 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 81.323 1 81.323 80.823 81.823 0 0 0 0 1.0024 1 45138 45138 0.13989 0.056541 1 + 41114 28309 27321 27993 48295 48295 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.88232421875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 106.92 1 106.92 106.42 107.42 0 0 0 0 1.0024 1 58705 58705 0.13989 0 1 + 41115 28309 27321 27993 48296 48296 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826904296875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 51.097 1 50.684 50.184 51.184 -0.41351 0 0 0 0.99248 1 27534 27534 0.62683 0.21856 1 + 41116 28309 27321 27993 48297 48297 -0.016068539630168743 MRFLAQFEFN 10 Unmodified _MRFLAQFEFN_ 0 0 0 REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF REV__ENST00000522994.1_1_5:169412837-169427133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822021484375 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 107.6 1 107.51 107.01 108.01 -0.087784 0 0 0 1.0024 1 58468 58468 0.13989 0 1 + 41117 28309 27321 27993 48298 48298 -0.016068539630168743 MRGAMAGH 8 Unmodified _MRGAMAGH_ 0 0 0 REV__nc|ENSG00000186174|Q86UU0-4|BCL9L REV__nc|ENSG00000186174|Q86UU0-4|BCL9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.6937866210938 2 415.691632 829.368712 1.5933 0.00066233 1.6115 0.0006699 3.2049 0.0013322 415.69278001049975 33.787 0.44754 29.802 29.555 30.002 -3.9853 56 24 3 0 0 0 0.80676 1 19432 19432 2.5775 0 1 15476000 + 41118 29855 27322 27994 48299 48299 -0.05279779543332097 MRGETFVEW 9 Unmodified _MRGETFVEW_ 0 0 0 REV__ENSG00000135605|ENST00000381501|TEC REV__ENSG00000135605|ENST00000381501|TEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7650756835938 2 577.768591 1153.52263 -0.41254 -0.00023835 -1.3317 -0.00076942 -1.7443 -0.0010078 577.7681486417259 31.97 0.18311 31.97 31.88 32.063 0 17 8 3 0 0 0 0.25681 1 16670 16670 19.257 2.3147 1 3576600 + 41119 20080 27323 27995 48300 48300 -0.04799091296831648 MRGLEKFA 8 Unmodified _MRGLEKFA_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3;REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000071564|P15923-3|TCF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.260498046875 2 476.257662 950.500772 NaN NaN NaN NaN NaN NaN NaN 48.835 1 48.792 48.292 49.292 -0.04369 0 0 0 0.96606 1 26366 26366 7.2892 0.93513 1 + 41120 17497;20453 27324 27996 48301 48301 0.023541487452575893 MRGVLQWI 8 Unmodified _MRGVLQWI_ 0 0 0 SLC25A41|p.R329W|1|0.21|ENSG00000181240|chr19:6426517-6426517|G/A|missense_variant SLC25A41|p.R329W|1|0.21|ENSG00000181240|chr19:6426517-6426517|G/A|missense_variant SLC25A41|p.R329W|1|0.21|ENSG00000181240|chr19:6426517-6426517|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7831115722656 2 501.781305 1001.54806 NaN NaN NaN NaN NaN NaN NaN 86.106 1 85.603 85.103 86.103 -0.50318 0 0 0 0.97444 1 47119 47119 2.5775 0 1 41121 30163 27325 27997 48302 48302 0.04734428016251968 MRHHFSWFWFF 11 Unmodified _MRHHFSWFWFF_ 0 0 0 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 MSMS AL20221201_MKP_PDAC_01 4 543.2521362304688 3 543.252041 1626.73429 NaN NaN NaN NaN NaN NaN NaN 4.7765 1 2.2945 1.7945 2.7945 -2.482 0 0 0 0.9435 1 2423 2423 0 0 1 + 41122 29827 27326 27998 48303 48303 -0.054003748152581466 MRHKVNVM 8 Unmodified _MRHKVNVM_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7705078125 2 507.770414 1013.52628 NaN NaN NaN NaN NaN NaN NaN 23.256 1 23.274 22.774 23.774 0.01749 0 0 0 0.97348 1 11973 11973 5.7604 0 1 + 41123 22894 27327 27999 48304 48304 0.020052999960398665 MRHMRMQL 8 Oxidation (M) _MRHM(Oxidation (M))RMQL_ M(0.003)RHM(0.499)RM(0.499)QL M(-22)RHM(0)RM(0)QL 0 0 1 REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF REV__ENST00000502495.1_1_4:129873642-129918394:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7724609375 2 559.772631 1117.53071 0.66928 0.00037465 -0.6927 -0.00038775 -0.02341 -1.3104E-05 559.772703024453 38.451 0.41974 34.082 33.87 34.29 -4.3689 69 26 4 0 0 0 0.37649 1 22587 22587 46.921 16.284 3 80052000 + 41124 28021 27328 28000 48305 48305 1863;1864 -0.023355588527010696 MRHRHFGQSG 10 Unmodified _MRHRHFGQSG_ 0 0 0 REV__LTR1_dup85|chr7:101629186-101629993:-|23.166449807367904|0.0003248618387484|16.12|179.0|32|2|anti-sense REV__LTR1_dup85|chr7:101629186-101629993:-|23.166449807367904|0.0003248618387484|16.12|179.0|32|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7921752929688 2 606.793798 1211.57304 0.6388 0.00038762 -2.6582 -0.001613 -2.0194 -0.0012254 606.7921670384418 30.2 0.22769 30.119 30.027 30.255 -0.080429 17 8 3 0 0 0 0.63399 1 15684 15684 9.3831 1.7742 1 1781300 + 41125 29453 27329 28001 48306 48306 -0.024281241284597854 MRKFIKAKKR 10 Unmodified _MRKFIKAKKR_ 0 0 0 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 MSMS AL20221201_MKP_PDAC_01 4 435.9504089355469 3 435.948182 1304.82272 NaN NaN NaN NaN NaN NaN NaN 103.63 1 97.456 96.956 97.956 -6.1757 0 0 0 1.0024 1 69469 69469 0.13989 0.056541 1 41126 6328 27330 28002 48307 48307 0.18249665495227418 MRKPRRRGRLF 11 Unmodified _MRKPRRRGRLF_ 0 0 0 REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 736.9463500976562 2 736.946413 1471.87827 NaN NaN NaN NaN NaN NaN NaN 101.96 1 95.781 95.281 96.281 -6.1757 0 0 0 0.94301 1 68435 68435 0.35063 0 1 + 41127 28384 27331 28003 48308 48308 0.16120891735567966 MRKQSNQNETC 11 Unmodified _MRKQSNQNETC_ 0 0 0 REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF REV__ENST00000607221.1_1_6:76000883-76000985:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 669.79736328125 2 669.798085 1337.58162 -0.75391 -0.00050497 -0.30489 -0.00020422 -1.0588 -0.00070919 669.798018157655 27.37 0.31471 27.37 27.215 27.53 0 48 15 4 0 0 0 0.46131 1 14058 14058 18.373 2.224 1 26943000 + 41128 29309 27332 28004 48309 48309 -0.07366983064821397 MRKRRPRFRWH 11 Unmodified _MRKRRPRFRWH_ 0 0 0 REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.9783325195312 3 542.644266 1624.91097 NaN NaN NaN NaN NaN NaN NaN 21.447 1 21.46 20.96 21.96 0.013796 0 0 0 0.94301 1 10983 10983 0.094841 0.094841 1 + 41129 27611 27333 28005 48310 48310 0.1235109885840302 MRLHEEEKFY 10 Unmodified _MRLHEEEKFY_ 0 0 0 ENSG00000185219|ENST00000396077|ZNF445 ENSG00000185219|ENST00000396077|ZNF445 ENSG00000185219|ENST00000396077|ZNF445 MSMS AL20221201_MKP_PDAC_01 4 691.3314208984375 2 691.332087 1380.64962 NaN NaN NaN NaN NaN NaN NaN 23.874 1 21.047 20.547 21.547 -2.8273 0 0 0 0.72101 1 12949 12949 13.042 2.243 1 41130 9345 27334 28006 48311 48311 -0.025477901425119853 MRLKLIQLYLF 11 Unmodified _MRLKLIQLYLF_ 0 0 0 REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF REV__ENST00000479838.2_1_7:104742652-104742796:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.9595642089844 3 479.959864 1436.85776 0.39353 0.00018888 -0.42664 -0.00020477 -0.033111 -1.5892E-05 479.9598689404609 48.394 0.25754 48.35 48.218 48.476 -0.04369 31 12 3 0 0 0 0.69509 1 26090 26090 4.7159 0 1 6204200 + 41131 27663 27335 28007 48312 48312 0.15680863512534415 MRMQPMDTLA 10 Unmodified _MRMQPMDTLA_ 0 0 0 REV__ENSG00000171560|ENST00000403106|FGA REV__ENSG00000171560|ENST00000403106|FGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5212097167969 3 398.5207 1192.54027 -0.092448 -3.6842E-05 1.4551 0.0005799 1.3627 0.00054306 398.52129090993344 45.473 0.24552 45.473 45.379 45.625 0 22 13 3 0 0 0 0.69064 1 24794 24794 1.9064 0 1 8210400 + 41132 22575 27336 28008 48313 48313 -0.048298353578275055 MRNIIIYTNK 10 Unmodified _MRNIIIYTNK_ 0 0 0 REV__ENST00000406156.2_1_6:121975405-121975696:+|nuORF REV__ENST00000406156.2_1_6:121975405-121975696:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3565063476562 2 633.355365 1264.69618 1.2661 0.00080191 0.14663 9.2868E-05 1.4128 0.00089478 633.3555683703783 102.93 0.050537 96.756 96.73 96.78 -6.1757 15 13 2 0 0 0 0.5933 1 69049 69049 11.495 1.4208 1 3311800 + 41133 26653 27337 28009 48314 48314 0.07441694479462058 MRNKLTEA 8 Unmodified _MRNKLTEA_ 0 0 0 REV__ENSG00000254852|ENST00000529166|NPIPA2 REV__ENSG00000254852|ENST00000529166|NPIPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7587280273438 2 481.758027 961.5015 0.25336 0.00012206 0.83531 0.00040242 1.0887 0.00052448 481.75861585241387 16.039 0.30686 13.482 13.343 13.65 -2.557 142 59 3 0 0 0 0.72664 1 8222 8222 14.838 2.5976 1 25749000 + 41134 24382 27338 28010 48315 48315 0.019209433942933174 MRNVCYTGRK 10 Unmodified _MRNVCYTGRK_ 0 0 0 ENST00000440835.6_1_12:71056318-71077911:-|nuORF ENST00000440835.6_1_12:71056318-71077911:-|nuORF ENST00000440835.6_1_12:71056318-71077911:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3084106445312 2 614.307892 1226.60123 NaN NaN NaN NaN NaN NaN NaN 92.391 1 91.91 91.41 92.41 -0.48092 0 0 0 0.99008 1 50498 50498 1.4819 0 1 41135 13388 27339 28011 48316 48316 -0.003005622633963867 MRNVELAP 8 Unmodified _MRNVELAP_ 0 0 0 ENSG00000180104|ENST00000512944|EXOC3 ENSG00000180104|ENST00000512944|EXOC3 ENSG00000180104|ENST00000512944|EXOC3 MSMS AL20221201_MKP_PDAC_01 4 465.2498474121094 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 101.57 1 95.395 94.895 95.895 -6.1757 0 0 0 0.93066 1 68157 68157 14.582 2.0501 1 41136 8883 27340 28012 48317 48317 0.012935583655917071 MRPMLMKCGI 10 Unmodified _MRPMLMKCGI_ 0 0 0 REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF REV__ENST00000300682.14_2_17:77082467-77082989:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2971801757812 2 590.297093 1178.57963 NaN NaN NaN NaN NaN NaN NaN 16.132 1 16.137 15.637 16.637 0.0050564 0 0 0 1.0061 1 8074 8074 0 0 1 + 41137 25311 27341 28013 48318 48318 -0.002514066079584154 MRPWLEEQI 9 Unmodified _MRPWLEEQI_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2;ENST00000512020.5_1_4:185339662-185350218:-|nuORF ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3045043945312 2 601.305341 1200.59613 0.59391 0.00035712 -0.65815 -0.00039575 -0.064239 -3.8627E-05 601.3044151463142 90.604 0.55183 84.428 84.219 84.771 -6.1757 48 32 2 0 0 0 0.15471 1 59868 59868 27.629 0 1 13638000 41138 7748 27342 28014 48319 48319 0.003854571456258782 MRQLEDRERTI 11 Unmodified _MRQLEDRERTI_ 0 0 0 REV__ENSG00000174799|ENST00000257287|CEP135 REV__ENSG00000174799|ENST00000257287|CEP135 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.9201965332031 3 482.920908 1445.7409 NaN NaN NaN NaN NaN NaN NaN 26.677 1 26.706 26.206 27.206 0.028664 0 0 0 0.9372 1 13846 13846 2.084 0 1 + 41139 22818 27343 28015 48320 48320 0.03585473554812779 MRQSEIKQQSE 11 Unmodified _MRQSEIKQQSE_ 0 0 0 REV__nc|ENSG00000127914|Q99996-5|AKAP9 REV__nc|ENSG00000127914|Q99996-5|AKAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.837890625 2 682.335358 1362.65616 0.57383 0.00039155 1.1109 0.00075803 1.6848 0.0011496 682.3361452654265 52.96 0.28231 52.897 52.761 53.044 -0.063419 34 13 4 0 0 0 0.44182 1 28679 28679 19.362 8.5624 1 4709400 + 41140 19593 27344 28016 48321 48321 -0.010658969817768593 MRREGDGTCS 10 Unmodified _MRREGDGTCS_ 0 0 0 nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2367553710938 2 556.23459 1110.45463 0.45453 0.00025282 3.2998 0.0018355 3.7543 0.0020883 556.236287002807 84.406 0.19496 84.406 84.319 84.514 0 11 9 2 0 0 0 0.71276 1 46793 46793 1.4819 0.79152 1 297750 41141 5041 27345 28017 48322 48322 -0.0961828421914106 MRRLLIPC 8 Unmodified _MRRLLIPC_ 0 0 0 REV__ENST00000440126.7_1_21:27372367-27372418:-|nuORF REV__ENST00000440126.7_1_21:27372367-27372418:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2905883789062 2 501.290982 1000.56741 0.089991 4.5112E-05 0.092889 4.6564E-05 0.18288 9.1676E-05 501.2910217646255 72.879 0.87537 72.921 72.193 73.068 0.041725 62 41 2 0 0 0 0.80975 1 40013 40013 0.79363 0 1 3693700 + 41142 27073 27346 28018 48323 48323 0.06715061035515646 MRRPWPQK 8 Unmodified _MRRPWPQK_ 0 0 0 nc|ENSG00000116809|Q13105-3|ZBTB17 nc|ENSG00000116809|Q13105-3|ZBTB17 nc|ENSG00000116809|Q13105-3|ZBTB17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5365905761719 3 366.871161 1097.59165 NaN NaN NaN NaN NaN NaN NaN 17.581 1 17.586 17.086 18.086 0.0050564 0 0 0 0.97444 1 8874 8874 0.40072 0.16487 1 41143 16146 27347 28019 48324 48324 0.04676037513377196 MRRSYDAGF 9 Unmodified _MRRSYDAGF_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2593383789062 2 551.758558 1101.50256 0.54392 0.00030011 -1.4518 -0.00080106 -0.90791 -0.00050095 552.2580645481429 89.394 0.87286 88.892 88.418 89.291 -0.50171 50 38 2 0 0 0 0.53666 1 48877 48877 5.2307 0.47466 1 604480 41144 5470 27348 28020 48325 48325 -0.04412842236797587 MRRWMVTAVD 10 Unmodified _MRRWMVTAVD_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8162841796875 2 632.818092 1263.62163 0.081836 5.1787E-05 -1.7467 -0.0011053 -1.6648 -0.0010535 632.8169019567995 24.193 0.27012 21.365 21.231 21.501 -2.8273 20 14 2 0 0 0 0.50362 1 13148 13148 16.149 0.90062 1 4320900 + 41145 22790 27349 28021 48326 48326 0.00036608396408155386 MRRWMVTAVDA 11 Unmodified _MRRWMVTAVDA_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.3350830078125 2 668.336649 1334.65875 -0.47634 -0.00031836 -0.99793 -0.00066695 -1.4743 -0.00098531 668.3360338700627 24.357 0.19655 24.357 24.251 24.448 0 35 12 4 0 0 0 0.35681 1 12414 12414 23.79 8.5413 1 6125800 + 41146 22790 27350 28022 48327 48327 0.004802799421895543 MRRWMVTAVDA 11 Unmodified _MRRWMVTAVDA_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.837158203125 2 668.336649 1334.65875 0.40302 0.00026935 -0.79972 -0.00053448 -0.39669 -0.00026513 668.3360320533268 28.465 0.24617 25.317 25.193 25.439 -3.1482 27 12 3 0 0 0 0.35681 1 15890 15890 23.79 6.3471 1 7117700 + 41147 22790 27350 28022 48328 48328 0.004802799421895543 MRRWMVTAVDA 11 Unmodified _MRRWMVTAVDA_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 668.336649 1334.65875 -0.47634 -0.00031836 -0.99793 -0.00066695 -1.4743 -0.00098531 668.3360338700627 24.357 0.19655 24.357 24.251 24.448 0 0 0 NaN 23.79 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 6125800 + 41148 22790 27350 28022 0.004802799421895543 MRSEFILGGM 10 Unmodified _MRSEFILGGM_ 0 0 0 REV__ENST00000513391.2_2_4:48834645-48835423:+|nuORF REV__ENST00000513391.2_2_4:48834645-48835423:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1904296875 3 380.856188 1139.54674 0.61401 0.00023385 -1.5379 -0.00058572 -0.9239 -0.00035187 381.18979766586585 85.443 0.81499 79.267 78.82 79.635 -6.1757 65 49 2 0 0 0 0.52097 1 56116 56116 9.7643 2.6625 1 33353000 + 41149 28125 27351 28023 48329 48329 -0.01745574134815797 MRSHFVIL 8 Unmodified _MRSHFVIL_ 0 0 0 REV__nc|ENSG00000123338|P55160-2|NCKAP1L REV__nc|ENSG00000123338|P55160-2|NCKAP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7813415527344 2 501.781305 1001.54806 0.024303 1.2195E-05 0.62241 0.00031231 0.64671 0.00032451 501.78166759509674 99.57 0.28708 99.413 99.238 99.525 -0.15751 15 9 2 0 0 0 0.78849 1 54354 54354 9.3474 0 1 835220 + 41150 19381 27352 28024 48330 48330 0.04734428016251968 MRSNSALRVL 10 Unmodified _MRSNSALRVL_ 0 0 0 nc|ENSG00000164932|Q96CG8-3|CTHRC1;chr8:103372659-103375738|171|15.25|0.87|4.14|+|ENST00000520337|CTHRC1,CTHRC1;nc|ENSG00000164932|Q96CG8-2|CTHRC1;ENSG00000164932|ENST00000330295|CTHRC1 nc|ENSG00000164932|Q96CG8-3|CTHRC1 nc|ENSG00000164932|Q96CG8-3|CTHRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8858032226562 3 382.885247 1145.63391 0.40201 0.00015392 3.0061 0.001151 3.4081 0.0013049 382.8865492738295 45.985 0.24161 45.957 45.844 46.086 -0.028011 34 10 5 0 0 0 0.48505 1 24723 24723 10.899 1.355 1 3272400 41151 124 27353 28025 48331 48331 0.06691968131099202 MRVLPSSAA 9 Unmodified _MRVLPSSAA_ 0 0 0 ENSG00000105641|ENST00000222248|SLC5A5 ENSG00000105641|ENST00000222248|SLC5A5 ENSG00000105641|ENST00000222248|SLC5A5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7532043457031 2 466.25512 930.495686 -0.12447 -5.8035E-05 -0.37982 -0.00017709 -0.50429 -0.00023513 466.2549724722854 28.752 0.3406 28.752 28.52 28.861 0 32 16 3 0 0 0 0.17718 1 14846 14846 20.454 8.8133 1 10694000 41152 2344 27354 28026 48332 48332 0.027658448826400672 MRVQMQKY 8 Unmodified _MRVQMQKY_ 0 0 0 REV__ENST00000555793.1_1_14:93275739-93276806:+|nuORF REV__ENST00000555793.1_1_14:93275739-93276806:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8519592285156 3 361.852778 1082.53651 NaN NaN NaN NaN NaN NaN NaN 92.25 1 92.25 91.75 92.75 0 0 0 0 0.97444 1 51009 51009 1.6526 0.45928 1 + 41153 28776 27355 28027 48333 48333 -0.0014613706937325333 MRWWHEWRRH 10 Unmodified _MRWWHEWRRH_ 0 0 0 REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 790.3837890625 2 790.383645 1578.75274 NaN NaN NaN NaN NaN NaN NaN 93.702 1 93.702 93.202 94.202 0 0 0 0 1.0061 1 51800 51800 0 0 1 + 41154 26558 27356 28028 48334 48334 -0.013488201206882877 MRWWMNPQ 8 Unmodified _MRWWMNPQ_ 0 0 0 ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENST00000462186.2_1_19:23991592-23991622:+|nuORF;ENST00000593783.1_1_19:24289421-24289472:+|nuORF;ENST00000300619.11_1_19:23545455-23556567:-|nuORF ENST00000600692.5_1_19:21350445-21366834:+|nuORF ENST00000600692.5_1_19:21350445-21366834:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5243530273438 3 383.509123 1147.50554 NaN NaN NaN NaN NaN NaN NaN 17.002 1 17.003 16.503 17.503 0.0010548 0 0 0 0.97444 1 8422 8422 0.40072 0.1317 1 41155 15802 27357 28029 48335 48335 -0.06231290383652777 MRYAETHRV 9 Unmodified _MRYAETHRV_ 0 0 0 nc|ENSG00000089050|O75884-2|RBBP9;ENSG00000089050|ENST00000337227|RBBP9 nc|ENSG00000089050|O75884-2|RBBP9 nc|ENSG00000089050|O75884-2|RBBP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1963195800781 3 388.197713 1161.57131 NaN NaN NaN NaN NaN NaN NaN 15.736 1 15.722 15.222 16.222 -0.014067 0 0 0 0.85447 1 7738 7738 0.96228 0.26461 1 41156 1510 27358 28030 48336 48336 -0.0030117793710360274 MSCTMWITF 9 Unmodified _MSCTMWITF_ 0 0 0 ENST00000452015.8_3_14:23767740-23768628:-|nuORF ENST00000452015.8_3_14:23767740-23768628:-|nuORF ENST00000452015.8_3_14:23767740-23768628:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2015991210938 2 560.237224 1118.45989 -0.33165 -0.0001858 -1.0501 -0.00058831 -1.3818 -0.00077412 560.236837844541 34.343 0.23401 34.343 34.226 34.46 0 28 11 3 0 0 0 0.19891 1 18148 18148 11.64 2.2929 1 4500300 41157 13535 27359 28031 48337 48337 -0.09459696680914931 MSDFQILKTT 10 Unmodified _MSDFQILKTT_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MSMS AL20221201_MKP_PDAC_01 4 395.1844177246094 3 395.205763 1182.59546 NaN NaN NaN NaN NaN NaN NaN 95.464 1 89.288 88.788 89.788 -6.1757 0 0 0 0.97592 1 63232 63232 1.5923 0 1 41158 2277 27360 28032 48338 48338 0.011466177059219262 MSDLRITEAF 10 Unmodified _MSDLRITEAF_ 0 0 0 ENST00000505383.1_1_5:53450329-53606402:-|nuORF;ENST00000502271.5_1_5:53603746-53606405:-|nuORF;ENSG00000185305|ENST00000504924|ARL15 ENST00000505383.1_1_5:53450329-53606402:-|nuORF ENST00000505383.1_1_5:53450329-53606402:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2713012695312 2 591.794806 1181.57506 0.30987 0.00018338 2.8561 0.0016902 3.166 0.0018736 591.7959912743557 58.157 0.14662 57.668 57.577 57.724 -0.48974 9 6 2 0 0 0 0.23412 1 31628 31628 5.7319 0 1 1387400 41159 14513 27361 28033 48339 48339 -0.008465529539080308 MSEVFQVTI 9 Unmodified _MSEVFQVTI_ 0 0 0 ENST00000297540.4_1_5:125961365-125961620:+|nuORF ENST00000297540.4_1_5:125961365-125961620:+|nuORF ENST00000297540.4_1_5:125961365-125961620:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2695922851562 2 527.267893 1052.52123 1.2266 0.00064673 1.1229 0.00059208 2.3495 0.0012388 527.2686844066304 54.31 0.51768 48.444 48.211 48.729 -5.8653 75 31 3 0 0 0 0.044296 1 34458 34458 43.858 3.4097 1 102650000 41160 11524 27362 28034 48340 48340 -0.002927253855887102 MSFLEYNKSL 10 Unmodified _MSFLEYNKSL_ 0 0 0 ENST00000379380.8_1_5:130535290-130535404:+|nuORF ENST00000379380.8_1_5:130535290-130535404:+|nuORF ENST00000379380.8_1_5:130535290-130535404:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3021240234375 2 616.305007 1230.59546 1.3131 0.00080928 -1.885 -0.0011617 -0.57189 -0.00035246 616.3039331560481 58.875 0.38108 52.8 52.649 53.03 -6.0745 33 20 2 0 0 0 0.20771 1 37700 37700 38.176 7.539 1 16598000 41161 12566 27363 28035 48341 48341 -0.010613822940740647 MSHCIYCY 8 Unmodified _MSHCIYCY_ 0 0 0 REV__ENSG00000134640|ENST00000257068|MTNR1B REV__ENSG00000134640|ENST00000257068|MTNR1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.1917114257812 2 510.192816 1018.37108 NaN NaN NaN NaN NaN NaN NaN 30.485 1 30.485 29.985 30.985 0 0 0 0 0.97444 1 15840 15840 2.8892 0 1 + 41162 19998 27364 28036 48342 48342 -0.13737111920568168 MSLDNCRSQMD 11 Unmodified _MSLDNCRSQMD_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8427734375 3 433.84239 1298.50534 0.56725 0.0002461 0.077097 3.3448E-05 0.64434 0.00027954 433.8426166353907 47.878 0.28828 47.878 47.725 48.014 0 51 13 5 0 0 0 0.66968 1 26262 26262 3.5927 0.96144 1 20800000 + 41163 21023 27365 28037 48343 48343 -0.13197122956466956 MSLDNCRSQMD 11 Unmodified _MSLDNCRSQMD_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.8425903320312 3 433.84239 1298.50534 0.46547 0.00020194 -0.19064 -8.2709E-05 0.27483 0.00011923 433.8425032064685 48.231 0.31172 47.878 47.71 48.022 -0.3526 48 15 4 0 0 0 0.61059 1 25879 25879 5.8681 1.1522 1 19566000 + 41164 21023 27365 28037 48344 48344 -0.13197122956466956 MSLDNCRSQMD 11 Unmodified _MSLDNCRSQMD_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 433.84239 1298.50534 0.56725 0.0002461 0.077097 3.3448E-05 0.64434 0.00027954 433.8426166353907 47.878 0.28828 47.878 47.725 48.014 0 -0.022198 0.00018917 NaN 5.8681 51 13 5 NaN NaN NaN NaN 0 NaN NaN 0 20800000 + 41165 21023 27365 28037 -0.13197122956466956 MSLDNCRSQMD 11 Unmodified _MSLDNCRSQMD_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 433.84239 1298.50534 0.46547 0.00020194 -0.19064 -8.2709E-05 0.27483 0.00011923 433.8425032064685 48.231 0.31172 47.878 47.71 48.022 -0.3526 -0.021848 -0.0001593 NaN 5.8681 48 15 4 NaN NaN NaN NaN 0 NaN NaN 0 19566000 + 41166 21023 27365 28037 -0.13197122956466956 MSLDNCRSQMD 11 Unmodified _MSLDNCRSQMD_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 433.84239 1298.50534 0.61267 0.0002658 -0.014025 -6.0847E-06 0.59865 0.00025972 433.8421776951624 47.983 0.1376 47.944 47.869 48.007 -0.038647 0.044046 7.057E-05 NaN 5.8681 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1696200 + 41167 21023 27365 28037 -0.13197122956466956 MSLEPWVAY 9 Unmodified _MSLEPWVAY_ 0 0 0 nc|ENSG00000160882|P15538-2|CYP11B1;ENSG00000160882|ENST00000292427|CYP11B1 nc|ENSG00000160882|P15538-2|CYP11B1 nc|ENSG00000160882|P15538-2|CYP11B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.260498046875 2 548.26261 1094.51067 -0.20663 -0.00011329 -3.5587 -0.0019511 -3.7653 -0.0020644 548.2609111002569 25.324 0.218 25.324 25.168 25.386 0 17 10 2 0 0 0 0.41742 1 12982 12982 11.64 0.84079 1 815550 41168 6764 27366 28038 48345 48345 -0.032807080400289124 MSMHFLCYGN 10 Unmodified _MSMHFLCYGN_ 0 0 0 ENST00000284037.9_1_5:65375163-65375247:+|nuORF ENST00000284037.9_1_5:65375163-65375247:+|nuORF ENST00000284037.9_1_5:65375163-65375247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.4980773925781 3 401.497895 1201.47186 0.84056 0.00033748 -0.86589 -0.00034765 -0.025335 -1.0172E-05 401.4975315826366 47.091 0.32297 47.057 46.919 47.242 -0.033417 45 16 3 0 0 0 0.70734 1 25332 25332 2.086 0.89267 1 38473000 41169 11431 27367 28039 48346 48346 -0.12082079937704293 MSNWFFAF 8 Unmodified _MSNWFFAF_ 0 0 0 REV__ENST00000371717.7_1_9:139317805-139318060:+|nuORF REV__ENST00000371717.7_1_9:139317805-139318060:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.48779296875 3 350.489834 1048.44767 NaN NaN NaN NaN NaN NaN NaN 20.094 1 20.094 19.594 20.594 0 0 0 0 0.97444 1 10094 10094 1.8442 0.6509 1 + 41170 26091 27368 28040 48347 48347 -0.07461229037426165 MSPPYFLL 8 Unmodified _MSPPYFLL_ 0 0 0 REV__ENST00000574894.1_1_16:16367711-16371421:+|nuORF REV__ENST00000574894.1_1_16:16367711-16371421:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.2527465820312 2 484.251514 966.488476 NaN NaN NaN NaN NaN NaN NaN 23.121 1 20.343 19.843 20.843 -2.7784 0 0 0 0.94749 1 12490 12490 11.114 0 1 + 41171 18293 27369 28041 48348 48348 0.003891122822210491 MSRKEKDER 9 Unmodified _MSRKEKDER_ 0 0 0 ENST00000498205.5_1_3:156260994-156266845:-|nuORF;ENST00000464138.1_1_3:156266623-156266755:-|nuORF;ENST00000467733.1_1_3:156262080-156272878:-|nuORF;ENSG00000114850|ENST00000265044|SSR3;nc|ENSG00000114850|Q9UNL2-2|SSR3 ENST00000498205.5_1_3:156260994-156266845:-|nuORF ENST00000498205.5_1_3:156260994-156266845:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5370178222656 3 393.536395 1177.58736 NaN NaN NaN NaN NaN NaN NaN 15.314 1 15.32 14.82 15.82 0.0057774 0 0 0 0.84737 1 7627 7627 0.96228 0.18574 1 41172 14416 27370 28042 48349 48349 0.0056648350914656476 MSRQMDEVK 9 Unmodified _MSRQMDEVK_ 0 0 0 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.17724609375 3 375.179331 1122.51616 NaN NaN NaN NaN NaN NaN NaN 83.271 1 83.271 82.771 83.771 0 0 0 0 0.85029 1 46185 46185 0.77653 0.4259 1 + 41173 17866 27371 28043 48350 48350 -0.04019352519867425 MSRQMDEVK 9 Unmodified _MSRQMDEVK_ 0 0 0 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.1852722167969 3 375.179331 1122.51616 NaN NaN NaN NaN NaN NaN NaN 102.91 1 102.86 102.36 103.36 -0.047928 0 0 0 0.85029 1 57155 57155 0.77653 0.37582 1 + 41174 17866 27371 28043 48351 48351 -0.04019352519867425 MSRVHSLER 9 Unmodified _MSRVHSLER_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7926635742188 2 557.792932 1113.57131 0.75238 0.00041967 -1.0023 -0.00055908 -0.24993 -0.00013941 557.7926391983151 55.824 0.61773 49.903 49.474 50.092 -5.9211 74 36 3 0 0 0 0.05483 1 35507 35507 43.772 3.8227 1 52897000 41175 1777 27372 28044 48352 48352 0.019068220629151256 MSRWWCQI 8 Unmodified _MSRWWCQI_ 0 0 0 REV__nc|ENSG00000214686|A8MYZ5|IQCF6 REV__nc|ENSG00000214686|A8MYZ5|IQCF6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7342529296875 2 555.254597 1108.49464 0.026484 1.4706E-05 1.422 0.00078955 1.4484 0.00080425 555.2551420078224 24.303 0.043633 24.303 24.285 24.329 0 5 3 2 0 0 0 8.7369 1 12410 12410 9.3474 0 1 414760 + 41176 24318 27373 28045 48353 48353 -0.055266927579396 MSSKTASTNNI 11 Unmodified _MSSKTASTNNI_ 0 0 0 ENSG00000172380|ENST00000370982|GNG12 ENSG00000172380|ENST00000370982|GNG12 ENSG00000172380|ENST00000370982|GNG12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2792358398438 2 577.27952 1152.54449 0.4048 0.00023368 -2.9973 -0.0017303 -2.5925 -0.0014966 577.2784858006789 37.176 0.33863 37.176 36.958 37.296 0 24 16 2 0 0 0 0.21511 1 19745 19745 31.268 10.854 1 4790400 41177 8211 27374 28046 48354 48354 -0.02568331338943608 MSSKTASTNNI 11 Unmodified _MSSKTASTNNI_ 0 0 0 ENSG00000172380|ENST00000370982|GNG12 ENSG00000172380|ENST00000370982|GNG12 ENSG00000172380|ENST00000370982|GNG12 MSMS AL20221201_MKP_PDAC_01 4 577.278564453125 2 577.27952 1152.54449 NaN NaN NaN NaN NaN NaN NaN 42.573 1 37.888 37.388 38.388 -4.6846 0 0 0 0.15644 1 25736 25736 41.956 14.327 1 41178 8211 27374 28046 48355 48355 -0.02568331338943608 MSSLVERACCR 11 Unmodified _MSSLVERACCR_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8626098632812 3 418.863237 1253.56788 NaN NaN NaN NaN NaN NaN NaN 21.045 1 21.045 20.545 21.545 0 0 0 0 0.94184 1 10623 10623 0.40827 0 1 41179 1776 27375 28047 48356 48356 -0.04875932097615987 MSSSVVCTFSV 11 Unmodified _MSSSVVCTFSV_ 0 0 0 ENST00000440928.5_1_1:240938871-240938988:-|nuORF ENST00000440928.5_1_1:240938871-240938988:-|nuORF ENST00000440928.5_1_1:240938871-240938988:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.7626953125 2 573.762117 1145.50968 NaN NaN NaN NaN NaN NaN NaN 55.01 1 49.089 48.589 49.589 -5.9211 0 0 0 0.58065 1 34965 34965 21.537 1.1224 1 41180 13389 27376 28048 48357 48357 -0.057252904712640884 MSTDFFLAHF 10 Unmodified _MSTDFFLAHF_ 0 0 0 ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA;nc|ENSG00000155719|Q7RTW8-2|OTOA ENSG00000155719|ENST00000646100|OTOA ENSG00000155719|ENST00000646100|OTOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8543701171875 3 405.854953 1214.54303 -0.040412 -1.6401E-05 -1.7814 -0.00072298 -1.8218 -0.00073939 406.1884159898765 28.232 0.19761 28.261 28.134 28.332 0.029564 11 7 2 0 0 0 0.68719 1 14719 14719 2.086 0.89267 1 1784100 41181 6404 27377 28049 48358 48358 -0.055659206370592074 MSTEEQYRI 9 Unmodified _MSTEEQYRI_ 0 0 0 nc|ENSG00000096093|Q5JVL4-2|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1 nc|ENSG00000096093|Q5JVL4-2|EFHC1 nc|ENSG00000096093|Q5JVL4-2|EFHC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2005615234375 2 578.768788 1155.52302 0.15494 8.9672E-05 1.4562 0.0008428 1.6111 0.00093248 578.7690739997081 54.811 0.23967 54.344 54.222 54.461 -0.46664 19 11 2 0 0 0 0.19891 1 29778 29778 7.2892 2.5332 1 2149000 41182 1670 27378 28050 48359 48359 -0.04851716367647896 MSWRQRLEEEK 11 Unmodified _MSWRQRLEEEK_ 0 0 0 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.9175720214844 3 497.917275 1490.73 0.0181 9.0125E-06 1.3027 0.00064863 1.3208 0.00065764 497.9183966311456 25.821 0.16432 22.87 22.804 22.969 -2.9511 16 11 2 0 0 0 0.72309 1 14188 14188 0.84494 0 1 11569000 + 41183 23979 27379 28051 48360 48360 0.004260711805727624 MSYEEMMTL 9 Unmodified _MSYEEMMTL_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7272338867188 2 567.729429 1133.4443 NaN NaN NaN NaN NaN NaN NaN 89.916 1 89.415 88.915 89.915 -0.50171 0 0 0 0.82396 1 49155 49155 4.756 0 1 41184 8814 27380 28052 48361 48361 -0.11708027988584035 MSYMVYFNFF 10 Unmodified _MSYMVYFNFF_ 0 0 0 ENST00000582124.1_1_17:15877924-15878653:+|nuORF;ENSG00000170425|ENST00000304222|ADORA2B ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.79150390625 2 674.790678 1347.5668 NaN NaN NaN NaN NaN NaN NaN 89.561 1 89.059 88.559 89.559 -0.50171 0 0 0 0.98914 1 48965 48965 1.8442 0 1 41185 15567 27381 28053 48362 48362 -0.09307823194876619 MSYTGFFL 8 Unmodified _MSYTGFFL_ 0 0 0 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 REV__nc|ENSG00000188687|Q9BY07-4|SLC4A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2253723144531 2 483.225497 964.43644 NaN NaN NaN NaN NaN NaN NaN 46.237 1 46.237 45.737 46.737 0 0 0 0 0.97348 1 25261 25261 5.7604 0.52976 1 + 41186 29866 27382 28054 48363 48363 -0.04720051131539549 MTAWILLPVSL 11 Unmodified _MTAWILLPVSL_ 0 0 0 ENSG00000168890|ENST00000334462|TMEM150A ENSG00000168890|ENST00000334462|TMEM150A ENSG00000168890|ENST00000334462|TMEM150A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2438049316406 3 415.242149 1242.70462 -0.22822 -9.4765E-05 2.238 0.00092931 2.0098 0.00083454 415.2426598016725 35.667 0.16359 35.692 35.602 35.765 0.024967 12 7 2 0 0 0 0.62014 1 18884 18884 10.315 2.3698 1 3429800 41187 7809 27383 28055 48364 48364 0.09297248396069335 MTCLKKHWMK 10 Unmodified _MTCLKKHWMK_ 0 0 0 ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4 ENST00000492632.5_1_20:9288449-9449247:+|nuORF ENST00000492632.5_1_20:9288449-9449247:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.3350219726562 2 653.335064 1304.65557 NaN NaN NaN NaN NaN NaN NaN 91.732 1 91.732 91.232 92.232 0 0 0 0 1.0061 1 50728 50728 0 0 1 41188 1946 27384 28056 48365 48365 0.015433135637749729 MTDKAPPGV 9 Oxidation (M) _M(Oxidation (M))TDKAPPGV_ M(1)TDKAPPGV M(73)TDKAPPGV 0 0 1 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2314758300781 2 466.23131 930.448068 0.0019032 8.8733E-07 -0.32013 -0.00014925 -0.31822 -0.00014837 466.2312000436001 20.031 0.55466 20.031 19.831 20.386 0 120 52 4 0 0 0 0.012668 1 10098 10098 72.968 38.566 1 3274700 41189 6872 27385 28057 48366 48366 1192 -0.019938541082069605 MTDKAPPGV 9 Oxidation (M) _M(Oxidation (M))TDKAPPGV_ M(1)TDKAPPGV M(56)TDKAPPGV 0 0 1 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2300415039062 2 466.23131 930.448068 0.54725 0.00025515 0.10462 4.8775E-05 0.65187 0.00030392 466.23141978785213 22.332 0.58882 19.597 19.354 19.943 -2.7348 67 32 3 0 0 0 0.029718 2 12142 12038;12142 55.503 32.354 1 5126200 41190 6872 27385 28057 48367;48368 48368 1192 -0.019938541082069605 MTDKAPPGV 9 Unmodified _MTDKAPPGV_ 0 0 0 ENSG00000162545|ENST00000375078|CAMK2N1;ENST00000489020.1_1_1:20810144-20811127:-|nuORF ENSG00000162545|ENST00000375078|CAMK2N1 ENSG00000162545|ENST00000375078|CAMK2N1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2337951660156 2 458.233853 914.453153 0.51925 0.00023794 -0.031917 -1.4626E-05 0.48733 0.00022331 458.23398626717136 28.009 0.5374 24.861 24.656 25.193 -3.1482 55 28 3 0 0 0 0.01958 2 15518 15518;15635 63.961 25.987 1 17332000 41191 6872 27385 28058 48369;48370 48369 -0.007495502455867609 MTEWFMCI 8 Unmodified _MTEWFMCI_ 0 0 0 ENSG00000169221|ENST00000409939|TBC1D10B;ENST00000475650.1_1_16:30370373-30370970:-|nuORF ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.719482421875 2 530.718667 1059.42278 NaN NaN NaN NaN NaN NaN NaN 68.883 1 68.402 67.902 68.902 -0.48071 0 0 0 0.97444 1 37652 37652 2.8892 0 1 41192 7850 27386 28059 48371 48371 -0.10455368226644168 MTFMKYVDS 9 Unmodified _MTFMKYVDS_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.5058898925781 3 374.505044 1120.4933 0.052848 1.9792E-05 -0.93788 -0.00035124 -0.88503 -0.00033145 374.83967829893857 76.448 0.4036 75.969 75.812 76.216 -0.47945 76 25 4 0 0 0 0.50598 1 41933 41933 7.1017 1.8048 1 9213300 41193 5548 27387 28060 48372 48372 -0.06212371637320757 MTFMLFWNI 9 Unmodified _MTFMLFWNI_ 0 0 0 ENST00000368608.3_1_6:116599413-116599590:-|nuORF ENST00000368608.3_1_6:116599413-116599590:-|nuORF ENST00000368608.3_1_6:116599413-116599590:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7901000976562 2 601.790481 1201.56641 0.67511 0.00040628 0.052767 3.1755E-05 0.72788 0.00043803 601.7902954492978 64.347 0.57613 63.862 63.654 64.23 -0.48512 62 26 4 0 0 0 0.54444 1 35263 35263 4.756 0 1 11129000 41194 12273 27388 28061 48373 48373 -0.026311981240496607 MTFSISWRQY 10 Unmodified _MTFSISWRQY_ 0 0 0 REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF REV__ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2179260253906 3 440.213141 1317.61759 0.06515 2.868E-05 1.7782 0.00078279 1.8434 0.00081147 440.214172759906 37.067 0.46894 37.089 36.816 37.285 0.021545 44 21 3 0 0 0 0.71276 1 19584 19584 0.62683 0.063655 1 3372800 + 41195 28388 27389 28062 48374 48374 -0.028511578256484427 MTFTATGQRY 10 Unmodified _MTFTATGQRY_ 0 0 0 ENSG00000018408|ENST00000360632|WWTR1 ENSG00000018408|ENST00000360632|WWTR1 ENSG00000018408|ENST00000360632|WWTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.52197265625 3 392.521974 1174.54409 -0.46759 -0.00018354 0.48952 0.00019215 0.021932 8.6086E-06 392.522178171933 20.545 0.16725 20.545 20.458 20.625 0 25 14 2 0 0 0 0.71042 1 10327 10327 1.7423 0.54893 1 1272500 41196 509 27390 28063 48375 48375 -0.03619706268113987 MTHVVCVF 8 Unmodified _MTHVVCVF_ 0 0 0 ENST00000373115.4_1_10:73772609-73772870:+|nuORF ENST00000373115.4_1_10:73772609-73772870:+|nuORF ENST00000373115.4_1_10:73772609-73772870:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2284851074219 2 468.227516 934.44048 0.7296 0.00034162 -0.1824 -8.5404E-05 0.5472 0.00025621 468.22722381502143 50.672 0.2575 50.618 50.47 50.728 -0.053871 21 12 2 0 0 0 0.67481 1 27399 27399 19.439 0 1 2853200 41197 12400 27391 28064 48376 48376 -0.029362849094809462 MTKQLVAQTH 10 Unmodified _MTKQLVAQTH_ 0 0 0 REV__ENSG00000183323|ENST00000396496|CCDC125 REV__ENSG00000183323|ENST00000396496|CCDC125 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2096557617188 3 386.209619 1155.60703 1.2813 0.00049486 -0.49069 -0.00018951 0.79064 0.00030535 386.20932457823875 75.058 1.2358 68.882 68.344 69.58 -6.1757 97 66 2 0 0 0 0.63399 1 49474 49474 5.4027 0.10583 1 22940000 + 41198 23338 27392 28065 48377 48377 0.0354485951991137 MTKQLVAQTH 10 Unmodified _MTKQLVAQTH_ 0 0 0 REV__ENSG00000183323|ENST00000396496|CCDC125 REV__ENSG00000183323|ENST00000396496|CCDC125 MSMS AL20221201_MKP_PDAC_01 4 386.2112121582031 3 386.209619 1155.60703 NaN NaN NaN NaN NaN NaN NaN 78.417 1 72.241 71.741 72.741 -6.1757 0 0 0 0.68942 1 51327 51327 10.899 0 1 + 41199 23338 27392 28065 48378 48378 0.0354485951991137 MTLLFQESGHK 11 Unmodified _MTLLFQESGHK_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8882141113281 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 38.898 1 38.898 38.398 39.398 0 0 0 0 0.93933 1 20808 20808 1.2148 0 1 41200 5519 27393 28066 48379 48379 0.010571113458127002 MTMAPIKLTRK 11 Unmodified _MTMAPIKLTRK_ 0 0 0 REV__ENST00000388966.4_1_12:8169981-8170332:-|nuORF REV__ENST00000388966.4_1_12:8169981-8170332:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3758544921875 2 645.375243 1288.73593 NaN NaN NaN NaN NaN NaN NaN 17.147 1 17.152 16.652 17.652 0.0050564 0 0 0 0.94307 1 8636 8636 0.30703 0 1 + 41201 26357 27394 28067 48380 48380 0.10311498158466748 MTMIMKVTMM 10 Unmodified _MTMIMKVTMM_ 0 0 0 ENST00000220913.9_1_8:141525302-141525362:+|nuORF ENST00000220913.9_1_8:141525302-141525362:+|nuORF ENST00000220913.9_1_8:141525302-141525362:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.1925354003906 3 406.192538 1215.55579 NaN NaN NaN NaN NaN NaN NaN 2.7278 1 2.7155 2.2155 3.2155 -0.012334 0 0 0 1.0061 1 1386 1386 0 0 1 41202 11031 27395 28068 48381 48381 -0.043370081566763474 MTMMENRCKD 10 Unmodified _MTMMENRCKD_ 0 0 0 REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF REV__ENST00000508837.1_1_5:169015420-169015759:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.17236328125 3 420.173083 1257.49742 -0.37633 -0.00015812 -1.9244 -0.00080857 -2.3007 -0.0009667 420.1724324349624 23.639 0.20472 23.639 23.489 23.694 0 16 10 2 0 0 0 0.71413 1 12042 12042 0.56317 0 1 887730 + 41203 17192 27396 28069 48382 48382 -0.1210297347759024 MTNDDILQKIK 11 Unmodified _MTNDDILQKIK_ 0 0 0 nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000460495.5_1_3:137956301-138014731:+|nuORF;nc|ENSG00000114098|Q8IUR7-8|ARMC8;ENST00000466762.1_1_3:137982955-138014731:+|nuORF nc|ENSG00000114098|Q8IUR7-3|ARMC8 nc|ENSG00000114098|Q8IUR7-3|ARMC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2411804199219 3 440.239355 1317.69624 0.36529 0.00016081 3.8842 0.00171 4.2495 0.0018708 440.2409771114831 19.654 0.16565 19.662 19.568 19.734 0.0078487 13 7 2 0 0 0 0.71938 1 10000 10000 2.4348 1.22 1 538940 41204 3017 27397 28070 48383 48383 0.05009649688781792 MTNPHNHLY 9 Unmodified _MTNPHNHLY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1754455566406 3 376.174797 1125.50256 1.3826 0.00052012 0.51385 0.0001933 1.8965 0.00071342 376.17503949374014 22.078 0.40149 19.344 19.14 19.542 -2.7348 38 22 3 0 0 0 0.30562 1 11856 11856 11.495 6.1978 1 3009000 41205 2204 27398 28071 48384 48384 -0.05516842236784214 MTPAQSKDDY 10 Unmodified _MTPAQSKDDY_ 0 0 0 REV__ENSG00000157502|ENST00000357175|PWWP3B REV__ENSG00000157502|ENST00000357175|PWWP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2523193359375 2 578.252971 1154.49139 0.74059 0.00042825 -0.46503 -0.00026891 0.27556 0.00015934 578.252754547409 53.947 0.32106 53.947 53.77 54.091 0 42 14 4 0 0 0 0.46514 1 29891 29891 18.146 8.7632 1 9988600 + 41206 21386 27399 28072 48385 48385 -0.07967709121589905 MTRAVPQT 8 Unmodified _MTRAVPQT_ 0 0 0 REV__ENSG00000177455|ENST00000538922|CD19 REV__ENSG00000177455|ENST00000538922|CD19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2383728027344 2 452.23947 902.464386 NaN NaN NaN NaN NaN NaN NaN 53.151 1 53.088 52.588 53.588 -0.063423 0 0 0 0.97444 1 28817 28817 4.3292 0 1 + 41207 22983 27400 28073 48386 48386 0.009252718485413425 MTRPKHFLQ 9 Unmodified _MTRPKHFLQ_ 0 0 0 nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7 nc|ENSG00000167634|Q8WX94|NLRP7 nc|ENSG00000167634|Q8WX94|NLRP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8809204101562 3 386.546454 1156.61753 0.17724 6.8512E-05 1.2175 0.00047062 1.3947 0.00053913 386.88202966992566 39.173 0.62691 39.184 38.801 39.427 0.011452 37 29 2 0 0 0 0.54816 1 20837 20837 4.5289 1.2092 1 2351800 41208 7645 27401 28074 48387 48387 0.04548886964994381 MTSCDESKRF 10 Unmodified _MTSCDESKRF_ 0 0 0 nc|ENSG00000121988|Q5FWF4-2|ZRANB3;ENST00000403017.2_1_2:135957914-136028945:-|nuORF;nc|ENSG00000121988|Q5FWF4-3|ZRANB3;ENSG00000121988|ENST00000264159|ZRANB3 nc|ENSG00000121988|Q5FWF4-2|ZRANB3 nc|ENSG00000121988|Q5FWF4-2|ZRANB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8436889648438 3 401.842608 1202.50599 0.4304 0.00017295 2.1855 0.00087823 2.6159 0.0010512 401.84347606789476 38.61 0.30584 34.241 34.058 34.364 -4.3689 27 19 2 0 0 0 0.63399 1 22776 22776 5.4027 0.87384 1 13103000 41209 3614 27402 28075 48388 48388 -0.08715960245103815 MTSCESLCMCI 11 Unmodified _MTSCESLCMCI_ 0 0 0 ENST00000510895.6_1_5:70898342-70931145:+|nuORF ENST00000510895.6_1_5:70898342-70931145:+|nuORF ENST00000510895.6_1_5:70898342-70931145:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.4878845214844 3 407.487791 1219.44154 NaN NaN NaN NaN NaN NaN NaN 22.999 1 20.221 19.721 20.721 -2.7784 0 0 0 0.94144 1 12414 12414 0.50596 0.051438 1 41210 14597 27403 28076 48389 48389 -0.1593994270940584 MTSWHPLSFF 10 Unmodified _MTSWHPLSFF_ 0 0 0 REV__ENST00000371822.9_1_X:117583420-117583648:+|nuORF REV__ENST00000371822.9_1_X:117583420-117583648:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2088317871094 3 418.198831 1251.57467 -0.38731 -0.00016197 3.0878 0.0012913 2.7005 0.0011293 418.20016510450137 23.42 0.24199 23.42 23.287 23.529 0 23 11 3 0 0 0 0.71276 1 11896 11896 0.62683 0 1 1449500 + 41211 26098 27404 28077 48390 48390 -0.04105927883097138 MTTDRSRLHI 10 Unmodified _MTTDRSRLHI_ 0 0 0 REV__ENSG00000256525|ENST00000539111|POLG2 REV__ENSG00000256525|ENST00000539111|POLG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3220825195312 2 615.324596 1228.63464 NaN NaN NaN NaN NaN NaN NaN 79.479 1 79.534 79.034 80.034 0.05497 0 0 0 0.85122 1 43917 43917 10.074 0.6908 1 + 41212 24554 27405 28078 48391 48391 0.029467627801523122 MTTIQMSV 8 Unmodified _MTTIQMSV_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2234802246094 2 455.722264 909.429975 -0.33243 -0.00015149 2.9338 0.001337 2.6014 0.0011855 455.7237566023844 30.493 0.20628 30.493 30.422 30.628 0 15 9 2 0 0 0 0.6895 1 15853 15853 18.135 0 1 1833900 41213 3070;16132 27406 28079 48392 48392 -0.028363123545773306 MTTIQMSV 8 Unmodified _MTTIQMSV_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 455.722264 909.429975 0.90192 0.00041102 3.9469 0.0017987 4.8488 0.0022097 455.72434486207607 34.582 0.21468 30.487 30.401 30.616 -4.0951 -0.0028355 0.00037588 NaN 18.135 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3667800 41214 3070;16132 27406 28079 -0.028363123545773306 MTTQVSHYYL 10 Unmodified _MTTQVSHYYL_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000462663.5_1_3:158415931-158428584:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8668518066406 3 414.865629 1241.57506 NaN NaN NaN NaN NaN NaN NaN 21.602 1 21.602 21.102 22.102 0 0 0 0 0.97855 1 10942 10942 1.4551 0 1 41215 3395 27407 28080 48393 48393 -0.03606552953874598 MTVGELSSFLM 11 Unmodified _MTVGELSSFLM_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2963256835938 2 607.793417 1213.57228 -0.55582 -0.00033783 -0.26664 -0.00016206 -0.82246 -0.00049989 607.7934032367115 35.133 0.54964 35.133 34.81 35.36 0 100 28 5 0 0 0 0.68427 1 18424 18424 5.7319 1.7875 1 27156000 41216 4741 27408 28081 48394 48394 -0.025961444030599523 MTVPWGSGFH 10 Unmodified _MTVPWGSGFH_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1767578125 3 373.507777 1117.5015 0.18086 6.7554E-05 0.71488 0.00026701 0.89575 0.00033457 373.5081385745816 24.935 0.14046 24.933 24.874 25.014 -0.0016766 9 5 2 0 0 0 0.69377 1 12779 12779 1.7423 0.41263 1 2560400 + 41217 30003 27409 28082 48395 48395 -0.05255056605687969 MTVPWGSGFH 10 Unmodified _MTVPWGSGFH_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.507777 1117.5015 -0.4148 -0.00015493 0.80568 0.00030093 0.39089 0.000146 373.50800825589295 24.74 0.20392 24.74 24.66 24.864 0 -0.096315 2.9059E-05 NaN 1.7423 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 556190 + 41218 30003 27409 28082 -0.05255056605687969 MTVPWGSGFH 10 Unmodified _MTVPWGSGFH_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.507777 1117.5015 0.18086 6.7554E-05 0.71488 0.00026701 0.89575 0.00033457 373.5081385745816 24.935 0.14046 24.933 24.874 25.014 -0.0016766 0.096315 -7.2684E-05 NaN 1.7423 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2560400 + 41219 30003 27409 28082 -0.05255056605687969 MTVVRNDKL 9 Unmodified _MTVVRNDKL_ 0 0 0 REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF REV__ENST00000483495.5_1_20:34218821-34220289:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 358.8943176269531 3 359.202465 1074.58556 0.89067 0.00031993 -0.19136 -6.8736E-05 0.69931 0.00025119 359.2022132607957 23.897 0.3002 21.07 20.931 21.231 -2.8273 25 17 2 0 0 0 0.18882 1 13065 13065 10.8 0.48427 1 2975700 + 41220 24305 27410 28083 48396 48396 0.051254744912057504 MTYALWML 8 Unmodified _MTYALWML_ 0 0 0 REV__ENSG00000198886|ENST00000361381|MT-ND4 REV__ENSG00000198886|ENST00000361381|MT-ND4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7515258789062 2 514.750824 1027.4871 NaN NaN NaN NaN NaN NaN NaN 75.175 1 75.175 74.675 75.675 0 0 0 0 0.97444 1 41823 41823 2.8892 0 1 + 41221 24091 27411 28084 48397 48397 -0.02554845078202561 MVADLVENSY 10 Oxidation (M) _M(Oxidation (M))VADLVENSY_ M(1)VADLVENSY M(55)VADLVENSY 0 0 1 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.763671875 2 578.763171 1155.51179 0.81446 0.00047138 -0.57793 -0.00033448 0.23653 0.00013689 578.7629922640804 47.766 0.35674 47.766 47.579 47.936 0 54 16 4 0 0 0 0.063761 1 26108 26108 54.774 34.32 1 15089000 41222 3152 27412 28085 48398 48398 558 -0.05974538461782686 MVADLVENSY 10 Oxidation (M) _M(Oxidation (M))VADLVENSY_ 0 0 1 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 578.763171 1155.51179 0.56948 0.00032959 -1.7316 -0.0010022 -1.1621 -0.00067261 579.2629303569488 48.142 0.12086 47.789 47.71 47.831 -0.3526 0.011505 -0.0012506 NaN 54.774 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1233300 41223 3152 27412 28085 558 -0.05974538461782686 MVADLVENSY 10 Unmodified _MVADLVENSY_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MSMS AL20221201_MKP_PDAC_01 4 570.7667846679688 2 570.765714 1139.51688 NaN NaN NaN NaN NaN NaN NaN 63.973 1 57.797 57.297 58.297 -6.1757 0 0 0 0.7417 1 41412 41412 14.838 4.0143 1 41224 3152 27412 28086 48399 48399 -0.04730234599173855 MVAYKTFL 8 Unmodified _MVAYKTFL_ 0 0 0 ENST00000342355.8_1_11:30965860-31263019:-|nuORF;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;ENST00000437348.5_1_11:31115730-31149186:-|nuORF ENST00000342355.8_1_11:30965860-31263019:-|nuORF ENST00000342355.8_1_11:30965860-31263019:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7672729492188 2 486.764789 971.515025 0.84533 0.00041148 0.25662 0.00012491 1.1019 0.00053639 486.7642950341999 41.106 0.41906 36.498 36.353 36.772 -4.6079 59 25 3 0 0 0 0.5284 2 24611 24611;24758 32.117 7.4431 1 41383000 41225 8052 27413 28087 48400;48401 48400 0.028128011735248037 MVCKVGKDSF 10 Unmodified _MVCKVGKDSF_ 0 0 0 nc|ENSG00000171174|Q9H477-2|RBKS;ENSG00000171174|ENST00000302188|RBKS nc|ENSG00000171174|Q9H477-2|RBKS nc|ENSG00000171174|Q9H477-2|RBKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2755126953125 2 557.275195 1112.53584 0.62174 0.00034648 -0.26045 -0.00014514 0.36129 0.00020134 557.2751892154233 65.746 0.55093 59.571 59.414 59.965 -6.1757 54 32 2 0 0 0 0.29752 1 42845 42845 27.629 5.8822 1 17335000 41226 8073 27414 28088 48402 48402 -0.015929765090959336 MVDEVTPF 8 Unmodified _MVDEVTPF_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 937.4346923828125 1 937.433546 936.426269 0.99604 0.00093372 -0.3015 -0.00028264 0.69454 0.00065108 937.4328275563287 100.37 0.14871 94.199 94.122 94.27 -6.1757 14 9 2 0 0 0 0.11943 1 67088 67088 93.883 19.487 1 21498000 41227 9779 27415 28089 48403 48403 -0.04448658856779275 MVDGKPVNL 9 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ M(1)VDGKPVNL M(48)VDGKPVNL 0 0 1 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2615661621094 2 494.760235 987.505917 -0.09076 -4.4905E-05 0.61168 0.00030263 0.52091 0.00025773 494.7606820897221 31.022 0.50744 31.022 30.852 31.359 0 47 24 3 0 0 0 0.042911 1 16095 16095 48.346 19.859 1 9181400 41228 4802 27416 28090 48404 48404 870 0.011664078172202608 MVDGKPVNL 9 Oxidation (M) _M(Oxidation (M))VDGKPVNL_ M(1)VDGKPVNL M(63)VDGKPVNL 0 0 1 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7615966796875 2 494.760235 987.505917 0.93658 0.00046338 -0.50032 -0.00024754 0.43625 0.00021584 494.75993148862426 35.146 0.5087 31.051 30.7 31.208 -4.0951 59 29 3 0 0 0 0.020973 2 20245 20245;20363 62.573 34.944 1 22764000 41229 4802 27416 28090 48405;48406 48405 870 0.011664078172202608 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ M(1)VDGTLLLL M(67)VDGTLLLL 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.5531616210938 1 990.553995 989.546719 0.003858 3.8215E-06 -0.95579 -0.00094677 -0.95194 -0.00094294 990.5533078689924 90.355 0.66624 90.355 90.054 90.72 0 126 37 5 0 0 0 0.016184 3 49951 49854;49951;50049 67.344 18.946 1 38593000 41230 10306 27417 28091 48407;48408;48409 48408 1681 0.051527491368574374 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ M(1)VDGTLLLL M(60)VDGTLLLL 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7804870605469 2 495.780636 989.546719 0.20952 0.00010388 -0.60329 -0.0002991 -0.39377 -0.00019522 495.7804103021675 90.336 0.62798 90.336 90.02 90.648 0 102 39 3 0 0 0 0.023164 2 50050 49952;50050 60.39 15.983 1 46987000 41231 10306 27417 28091 48410;48411 48411 1681 0.051527491368574374 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ M(1)VDGTLLLL M(57)VDGTLLLL 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7811584472656 2 495.780636 989.546719 0.63934 0.00031697 -0.53864 -0.00026705 0.1007 4.9927E-05 495.7804914947575 90.216 0.44122 90.258 90.022 90.464 0.042183 36 15 4 0 0 0 0.026094 1 50125 50125 57.471 13.064 1 14187000 41232 10306 27417 28091 48412 48412 1681 0.051527491368574374 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ M(1)VDGTLLLL M(67)VDGTLLLL 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.5571899414062 1 990.553995 989.546719 0.73754 0.00073058 -0.31429 -0.00031132 0.42325 0.00041925 990.5538561947384 99.425 0.94296 93.25 92.615 93.558 -6.1757 145 61 3 0 0 0 0.016184 4 65666 65666;65847;66017;66364 67.344 12.57 1 210120000 41233 10306 27417 28091 48413;48414;48415;48416 48413 1681 0.051527491368574374 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ M(1)VDGTLLLL M(60)VDGTLLLL 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7812194824219 2 495.780636 989.546719 0.82411 0.00040858 -0.17138 -8.4969E-05 0.65272 0.00032361 495.78069742766525 99.229 0.94296 93.053 92.615 93.558 -6.1757 157 61 4 0 0 0 0.023164 4 65865 65683;65865;66034;66216 60.39 15.983 1 211580000 41234 10306 27417 28091 48417;48418;48419;48420 48418 1681 0.051527491368574374 MVDGTLLLL 9 Oxidation (M) _M(Oxidation (M))VDGTLLLL_ 0 0 1 ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 990.553995 989.546719 0.33376 0.00033061 -1.6682 -0.0016525 -1.3345 -0.0013219 990.5525722962966 90.748 0.78948 90.253 89.991 90.78 -0.49458 -0.050757 -0.00032423 NaN 67.344 163 46 5 NaN NaN NaN NaN 0 NaN NaN 0 102110000 41235 10306 27417 28091 1681 0.051527491368574374 MVDHENFIYFH 11 Unmodified _MVDHENFIYFH_ 0 0 0 ENSG00000140284|ENST00000267842|SLC27A2;nc|ENSG00000140284|O14975-2|SLC27A2 ENSG00000140284|ENST00000267842|SLC27A2 ENSG00000140284|ENST00000267842|SLC27A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.3191528320312 2 726.324262 1450.63397 -0.88561 -0.00064324 -2.9065 -0.0021111 -3.7921 -0.0027543 726.3226921912683 78.016 0.40381 77.534 77.488 77.891 -0.4826 27 23 2 0 0 0 0.7326 1 42901 42901 1.1933 0.84271 1 3308400 41236 5218 27418 28092 48421 48421 -0.07332076659554332 MVDNTKFTM 9 Oxidation (M) _M(Oxidation (M))VDNTKFTM_ M(1)VDNTKFTM M(40)VDNTKFTM(-40) 0 0 1 ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MSMS AL20221201_MKP_PDAC_01 4 551.749267578125 2 551.74901 1101.48347 NaN NaN NaN NaN NaN NaN NaN 40.302 1 35.773 35.273 36.273 -4.5294 0 0 0 0.12101 1 24052 24052 40.239 17.091 2 41237 4303 27419 28093 48422 48422 771 -0.06321559642742614 MVDSHSLS 8 Unmodified _MVDSHSLS_ 0 0 0 REV__ENSG00000118689|ENST00000406360|FOXO3 REV__ENSG00000118689|ENST00000406360|FOXO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2005310058594 2 438.20001 874.385467 1.7011 0.00074543 0.66313 0.00029058 2.3643 0.001036 438.20038499138104 105.35 0.10162 99.171 99.098 99.199 -6.1757 41 26 2 0 0 0 0.80232 1 70555 70555 5.2307 0 1 69118000 + 41238 19164 27420 28094 48423 48423 -0.0567500017640441 MVDWFWLI 8 Unmodified _MVDWFWLI_ 0 0 0 ENST00000479007.5_1_7:1474234-1478659:-|nuORF;nc|ENSG00000164877|Q8IY33-3|MICALL2;ENST00000467394.5_1_7:1474234-1480903:-|nuORF;ENST00000472100.5_1_7:1474569-1480903:-|nuORF;nc|ENSG00000164877|Q8IY33-5|MICALL2;ENSG00000164877|ENST00000297508|MICALL2;ENST00000496184.1_1_7:1477093-1477677:-|nuORF ENST00000479007.5_1_7:1474234-1478659:-|nuORF ENST00000479007.5_1_7:1474234-1478659:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2797241210938 2 555.278063 1108.54157 NaN NaN NaN NaN NaN NaN NaN 91.207 1 90.712 90.212 91.212 -0.49457 0 0 0 0.9706 1 49857 49857 6.3541 0.59368 1 41239 7255 27421 28095 48424 48424 -0.008355099351092576 MVEKTLDR 8 Unmodified _MVEKTLDR_ 0 0 0 ENST00000313213.4_1_2:24338349-24338406:-|nuORF ENST00000313213.4_1_2:24338349-24338406:-|nuORF ENST00000313213.4_1_2:24338349-24338406:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2662658691406 2 496.265684 990.516816 0.51413 0.00025515 0.090386 4.4856E-05 0.60452 0.0003 496.26563050043274 88.348 0.33137 87.844 87.624 87.956 -0.50423 26 14 2 0 0 0 0.75262 1 48270 48270 12.532 0 1 921770 41240 11711 27422 28096 48425 48425 0.021178101915097614 MVFHHFSL 8 Unmodified _MVFHHFSL_ 0 0 0 REV__ENST00000374212.4_1_9:116024667-116024982:+|nuORF REV__ENST00000374212.4_1_9:116024667-116024982:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.254150390625 2 509.25238 1016.49021 NaN NaN NaN NaN NaN NaN NaN 62.95 1 62.95 62.45 63.45 0 0 0 0 0.97348 1 35115 35115 5.7604 1.0044 1 + 41241 26173 27423 28097 48426 48426 -0.017378339091692396 MVFQGEFVQW 10 Unmodified _MVFQGEFVQW_ 0 0 0 REV__ENST00000567274.5_1_15:43103896-43132622:-|nuORF REV__ENST00000567274.5_1_15:43103896-43132622:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5355529785156 3 424.202353 1269.58523 -0.22949 -9.735E-05 -3.2934 -0.0013971 -3.5229 -0.0014944 424.2007752579695 31.811 0.17233 31.841 31.753 31.925 0.030106 9 7 2 0 0 0 0.67755 1 16699 16699 5.4027 0.68679 1 2392400 + 41242 28928 27424 28098 48427 48427 -0.038779452286689775 MVGDRVRSL 9 Unmodified _MVGDRVRSL_ 0 0 0 ENST00000429927.6_2_4:76555473-76555581:-|nuORF ENST00000429927.6_2_4:76555473-76555581:-|nuORF ENST00000429927.6_2_4:76555473-76555581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.78466796875 2 516.784576 1031.5546 NaN NaN NaN NaN NaN NaN NaN 102.37 1 102.25 101.75 102.75 -0.11613 0 0 0 0.57317 1 55854 55854 13.508 3.3245 1 41243 13225 27425 28099 48428 48428 0.040083211769797344 MVGKTFTY 8 Oxidation (M) _M(Oxidation (M))VGKTFTY_ M(1)VGKTFTY M(52)VGKTFTY 0 0 1 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7361450195312 2 481.736228 961.457904 -0.89084 -0.00042915 -0.3443 -0.00016586 -1.2351 -0.00059501 481.73618768179904 32.697 0.19166 32.697 32.58 32.772 0 21 9 3 0 0 0 0.33377 1 17092 17092 51.63 33.495 1 4110300 41244 259 27426 28100 48429 48429 21 -0.02436666102835261 MVGKTFTY 8 Unmodified _MVGKTFTY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7397155761719 2 473.738771 945.462989 1.2595 0.00059668 -0.38666 -0.00018318 0.87286 0.00041351 473.7385449280033 41.934 0.37035 37.299 37.085 37.455 -4.6353 48 23 3 0 0 0 0.28079 2 25171 25171;25311 57.471 28.39 1 20956000 41245 259 27426 28101 48430;48431 48430 -0.0119236224022643 MVGLCALFVI 10 Unmodified _MVGLCALFVI_ 0 0 0 REV__ENSG00000187527|ENST00000342358|ATP13A5 REV__ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20221201_MKP_PDAC_01 4 355.8668518066406 3 355.866025 1064.57624 NaN NaN NaN NaN NaN NaN NaN 43.185 1 38.42 37.92 38.92 -4.7648 0 0 0 0.79473 1 26200 26200 10.8 0 1 + 41246 23638 27427 28102 48432 48432 0.04653989881308007 MVGRRNAP 8 Unmodified _MVGRRNAP_ 0 0 0 ENST00000474120.5_1_7:100895188-100895275:-|nuORF ENST00000474120.5_1_7:100895188-100895275:-|nuORF ENST00000474120.5_1_7:100895188-100895275:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7471618652344 2 450.745254 899.475954 0.30875 0.00013917 3.1136 0.0014035 3.4224 0.0015426 450.7464245941368 16.368 0.1007 13.811 13.773 13.874 -2.557 16 12 2 0 0 0 0.80143 1 8471 8471 5.7604 0.52976 1 2807200 41247 13931 27428 28103 48433 48433 0.022195136625327905 MVGTHREDSV 10 Unmodified _MVGTHREDSV_ 0 0 0 ENSG00000140262|ENST00000333725|TCF12;nc|ENSG00000140262|Q99081|TCF12;nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12 ENSG00000140262|ENST00000333725|TCF12 ENSG00000140262|ENST00000333725|TCF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.767578125 2 565.76658 1129.51861 0.19447 0.00011002 0.76975 0.0004355 0.96421 0.00054552 565.7669819777565 44.805 0.9883 44.783 44.261 45.249 -0.022068 101 52 3 0 0 0 0.25982 1 24130 24130 29.841 0 1 28680000 41248 5212 27429 28104 48434 48434 -0.040971807905634705 MVHGHCMCRH 10 Unmodified _MVHGHCMCRH_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.7462768554688 2 605.74609 1209.47763 NaN NaN NaN NaN NaN NaN NaN 10.974 1 10.99 10.49 11.49 0.015327 0 0 0 1.0061 1 5419 5419 0 0 1 41249 1582 27430 28105 48435 48435 -0.11873259907019929 MVHPNVICD 9 Unmodified _MVHPNVICD_ 0 0 0 ENST00000466342.1_1_5:179250916-179260288:+|nuORF;nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1 ENST00000466342.1_1_5:179250916-179260288:+|nuORF ENST00000466342.1_1_5:179250916-179260288:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2402954101562 2 514.238612 1026.46267 1.6136 0.00082976 0.95407 0.00049062 2.5676 0.0013204 514.239278235764 100.88 0.12578 94.707 94.623 94.748 -6.1757 13 7 2 0 0 0 0.49272 1 67586 67586 7.9102 0.62092 1 42654000 41250 6778 27431 28106 48436 48436 -0.0495010523172823 MVHSLIEAY 9 Oxidation (M) _M(Oxidation (M))VHSLIEAY_ M(1)VHSLIEAY M(71)VHSLIEAY 0 0 1 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.76416015625 2 539.765517 1077.51648 0.52022 0.0002808 -2.4322 -0.0013128 -1.912 -0.001032 539.7640379861565 45.811 0.46001 45.811 45.704 46.164 0 30 22 2 0 0 0 0.013472 1 25018 25018 70.716 32.54 1 9983600 41251 5818 27432 28107 48437 48437 1048 -0.019176095283455652 MVHSLIEAY 9 Oxidation (M) _M(Oxidation (M))VHSLIEAY_ M(1)VHSLIEAY M(51)VHSLIEAY 0 0 1 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7656860351562 2 539.765517 1077.51648 NaN NaN NaN NaN NaN NaN NaN 46.065 1 46.065 45.565 46.565 0 0 0 0 0.071041 1 25155 25155 50.855 25.456 1 41252 5818 27432 28107 48438 48438 1048 -0.019176095283455652 MVHSLIEAY 9 Oxidation (M) _M(Oxidation (M))VHSLIEAY_ M(1)VHSLIEAY M(42)VHSLIEAY 0 0 1 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7654418945312 2 539.765517 1077.51648 NaN NaN NaN NaN NaN NaN NaN 46.413 1 46.076 45.576 46.576 -0.33664 0 0 0 0.10545 1 24841 24841 42.095 25.152 1 41253 5818 27432 28107 48439 48439 1048 -0.019176095283455652 MVHSLIEAY 9 Oxidation (M) _M(Oxidation (M))VHSLIEAY_ 0 0 1 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.765517 1077.51648 0.37173 0.00020065 -0.58675 -0.00031671 -0.21502 -0.00011606 539.7650088323926 46.377 0.17133 46.041 45.901 46.073 -0.33664 0.115 0.0012274 NaN 70.716 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2882000 41254 5818 27432 28107 1048 -0.019176095283455652 MVHSLIEAY 9 Unmodified _MVHSLIEAY_ 0 0 0 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.311767578125 2 531.76806 1061.52157 0.60876 0.00032372 0.27554 0.00014652 0.8843 0.00047024 531.7681050920623 50.744 0.20133 50.33 50.236 50.438 -0.41351 17 9 3 0 0 0 0.20528 1 27304 27304 8.5933 2.8329 1 992420 41255 5818 27432 28108 48440 48440 -0.006733056657367342 MVHSLIEAY 9 Unmodified _MVHSLIEAY_ 0 0 0 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8;ENST00000486704.1_1_X:71791905-71792635:-|nuORF;nc|ENSG00000147099|Q9BY41-6|HDAC8;nc|ENSG00000147099|Q9BY41-8|HDAC8;nc|ENSG00000147099|Q9BY41-7|HDAC8;ENST00000478743.1_1_X:71710853-71792680:-|nuORF;nc|ENSG00000147099|Q9BY41-5|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7681274414062 2 531.76806 1061.52157 0.73674 0.00039177 -0.21963 -0.00011679 0.5171 0.00027498 531.7681436634724 56.527 0.30813 50.55 50.395 50.703 -5.9769 27 17 2 0 0 0 0.010877 1 36031 36031 77.984 49.497 1 33536000 41256 5818 27432 28108 48441 48441 -0.006733056657367342 MVIRMIFCVL 10 Unmodified _MVIRMIFCVL_ 0 0 0 REV__nc|ENSG00000134531|P54849-2|EMP1 REV__nc|ENSG00000134531|P54849-2|EMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8369140625 2 612.836908 1223.65926 NaN NaN NaN NaN NaN NaN NaN 102.16 1 102.05 101.55 102.55 -0.11613 0 0 0 1.0061 1 55742 55742 0 0 1 + 41257 29641 27433 28109 48442 48442 0.05637983337669539 MVISEDTVY 9 Oxidation (M) _M(Oxidation (M))VISEDTVY_ M(1)VISEDTVY M(44)VISEDTVY 0 0 1 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 ENSG00000092470|ENST00000263795|WDR76 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2481079101562 2 536.74699 1071.47943 0.56805 0.0003049 0.24464 0.00013131 0.81268 0.00043621 536.7476828053966 43.094 0.21881 43.094 42.985 43.204 0 16 10 2 0 0 0 0.052168 1 23392 23392 44.407 30.899 1 4590000 41258 1618 27434 28110 48443 48443 272 -0.05345325864777806 MVIVKVLPV 9 Unmodified _MVIVKVLPV_ 0 0 0 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 ENSG00000187492|ENST00000412678|CDHR4 MSMS AL20221201_MKP_PDAC_01 4 499.1864318847656 2 499.327556 996.64056 NaN NaN NaN NaN NaN NaN NaN 106.18 1 100.01 99.507 100.51 -6.1757 0 0 0 0.85737 1 71089 71089 0.6015 0 1 41259 9553 27435 28111 48444 48444 0.1421051302976366 MVKNSRLS 8 Unmodified _MVKNSRLS_ 0 0 0 REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 MSMS AL20221201_MKP_PDAC_01 4 467.7614135742188 2 467.760569 933.506586 NaN NaN NaN NaN NaN NaN NaN 16.066 1 13.509 13.009 14.009 -2.557 0 0 0 0.93394 1 8296 8296 13.906 0.39817 1 + 41260 29802;29803 27436 28112 48445 48445 0.037172472569068304 MVKNTKNQ 8 Unmodified _MVKNTKNQ_ 0 0 0 REV__ENST00000298119.8_1_14:42077105-42077159:+|nuORF REV__ENST00000298119.8_1_14:42077105-42077159:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7591247558594 2 481.758027 961.5015 0.25336 0.00012206 0.83531 0.00040242 1.0887 0.00052448 481.75861585241387 16.039 0.30686 13.482 13.343 13.65 -2.557 142 59 3 0 0 0 0.76266 1 8323 8323 11.64 0 1 25749000 + 41261 25287 27437 28113 48446 48446 0.01920943394304686 MVKRMERLY 9 Unmodified _MVKRMERLY_ 0 0 0 ENST00000482013.1_1_1:235493191-235493218:+|nuORF ENST00000482013.1_1_1:235493191-235493218:+|nuORF ENST00000482013.1_1_1:235493191-235493218:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.2228698730469 3 409.222983 1224.64712 NaN NaN NaN NaN NaN NaN NaN 86.648 1 80.473 79.973 80.973 -6.1757 0 0 0 0.56988 1 57124 57124 13.615 1.4401 1 41262 14094 27438 28114 48447 48447 0.0437808291883357 MVLAFCFCWG 10 Unmodified _MVLAFCFCWG_ 0 0 0 ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2 ENSG00000269433|ENST00000599405|OPN1MW3 ENSG00000269433|ENST00000599405|OPN1MW3 MSMS AL20221201_MKP_PDAC_01 4 392.8402404785156 3 392.839481 1175.49661 NaN NaN NaN NaN NaN NaN NaN 43.401 1 38.637 38.137 39.137 -4.7648 0 0 0 0.96627 1 26360 26360 2.086 0 1 41263 7441 27439 28115 48448 48448 -0.0841140006432397 MVLCRNLKI 9 Unmodified _MVLCRNLKI_ 0 0 0 ENST00000393627.6_1_3:121825188-121825287:+|nuORF ENST00000393627.6_1_3:121825188-121825287:+|nuORF ENST00000393627.6_1_3:121825188-121825287:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3169555664062 2 545.317197 1088.61984 0.29242 0.00015946 -0.46242 -0.00025217 -0.17001 -9.2707E-05 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.58865 1 43396 43396 2.0598 0 1 5672300 41264 12709 27440 28116 48449 48449 0.07907599378449959 MVLDWCYGRLP 11 Unmodified _MVLDWCYGRLP_ 0 0 0 ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1 ENST00000481860.6_1_11:119043673-119051967:+|nuORF ENST00000481860.6_1_11:119043673-119051967:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 676.8286743164062 2 676.828126 1351.6417 NaN NaN NaN NaN NaN NaN NaN 68.38 1 68.38 67.88 68.88 0 0 0 0 0.94184 1 38118 38118 1.1933 0.12188 1 41265 6745 27441 28117 48450 48450 -0.02005640663628583 MVLENVKEM 9 2 Oxidation (M) _M(Oxidation (M))VLENVKEM(Oxidation (M))_ M(1)VLENVKEM(1) M(54)VLENVKEM(54) 0 0 2 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7674560546875 2 562.769942 1123.52533 -0.11049 -6.2178E-05 -1.0448 -0.000588 -1.1553 -0.00065018 562.7695678112625 24.092 0.23486 24.092 23.975 24.209 0 32 11 4 0 0 0 0.032796 1 12287 12287 53.833 32.086 1 4775700 41266 3877 27442 28118 48451 48451 689;690 -0.03149003954172258 MVLENVKEM 9 Oxidation (M) _MVLENVKEM(Oxidation (M))_ MVLENVKEM(1) M(-62)VLENVKEM(62) 0 0 1 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2760620117188 2 554.772485 1107.53042 1.1005 0.00061053 1.5962 0.00088554 2.6967 0.0014961 555.2751624005447 36.932 0.35861 32.649 32.438 32.796 -4.2835 54 21 4 0 0 0 0.021948 1 21594 21594 61.602 34.718 2 18052000 41267 3877 27442 28119 48452 48452 689;690 -0.019047000915861645 MVLENVKEM 9 Oxidation (M) _M(Oxidation (M))VLENVKEM_ M(1)VLENVKEM M(53)VLENVKEM(-53) 0 0 1 nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 nc|ENSG00000125743|P62316-2|SNRPD2 MSMS AL20221201_MKP_PDAC_01 4 554.772705078125 2 554.772485 1107.53042 NaN NaN NaN NaN NaN NaN NaN 41.175 1 36.567 36.067 37.067 -4.6079 0 0 0 0.061499 1 24686 24686 53.317 17.273 2 41268 3877 27442 28119 48453 48453 689;690 -0.019047000915861645 MVLFRHLT 8 Unmodified _MVLFRHLT_ 0 0 0 REV__ENSG00000171408|ENST00000308191|PDE7B REV__ENSG00000171408|ENST00000308191|PDE7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7903747558594 2 508.78913 1015.56371 NaN NaN NaN NaN NaN NaN NaN 20.955 1 20.955 20.455 21.455 0 0 0 0 0.96305 1 10571 10571 7.9102 0 1 + 41269 22557 27443 28120 48454 48454 0.05654714533295646 MVLHTCEETWN 11 Unmodified _MVLHTCEETWN_ 0 0 0 REV__ENSG00000104320|ENST00000265433|NBN REV__ENSG00000104320|ENST00000265433|NBN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8667602539062 3 454.865412 1361.57441 NaN NaN NaN NaN NaN NaN NaN 2.0116 1 1.9946 1.4946 2.4946 -0.017019 0 0 0 0.94313 1 1030 1030 0.073264 0 1 + 41270 18348 27444 28121 48455 48455 -0.09191715665247102 MVLLESEQF 9 Oxidation (M) _M(Oxidation (M))VLLESEQF_ M(1)VLLESEQF M(47)VLLESEQF 0 0 1 ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2711791992188 2 556.270632 1110.52671 0.7516 0.00041809 0.069557 3.8692E-05 0.82116 0.00045679 556.2707871589057 60.771 0.39433 60.771 60.559 60.953 0 54 16 5 0 0 0 0.045537 1 33909 33909 46.921 29.979 1 9038000 41271 5221 27445 28122 48456 48456 961 -0.024130465938014822 MVLLESEQF 9 Unmodified _MVLLESEQF_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MSMS AL20221201_MKP_PDAC_01 4 548.2708740234375 2 548.273175 1094.5318 NaN NaN NaN NaN NaN NaN NaN 80.689 1 74.513 74.013 75.013 -6.1757 0 0 0 0.27711 1 52942 52942 26.341 8.2063 1 41272 5221 27445 28123 48457 48457 -0.011687427311699139 MVLLSIPFF 9 Unmodified _MVLLSIPFF_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2040405273438 3 356.205035 1065.59328 1.7126 0.00061002 1.4765 0.00052592 3.189 0.0011359 356.20556616330833 38.029 0.78835 33.66 33.128 33.916 -4.3689 132 47 4 0 0 0 0.39863 1 22163 22163 12.241 4.6317 1 284170000 41273 3701 27446 28124 48458 48458 0.06310233758767936 MVLPLLIFV 9 Unmodified _MVLPLLIFV_ 0 0 0 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 ENSG00000134153|ENST00000256545|EMC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.83056640625 2 522.829932 1043.64531 1.6539 0.00086472 -1.9332 -0.0010107 -0.27924 -0.00014599 522.8296691089981 103.13 0.055252 96.957 96.935 96.991 -6.1757 20 12 2 0 0 0 0.1492 1 69171 69171 28.173 7.302 1 11489000 41274 4563 27447 28125 48459 48459 0.12523397172549267 MVLQLCPVL 9 Unmodified _MVLQLCPVL_ 0 0 0 ENST00000464783.1_1_3:9879702-9882102:-|nuORF;nc|ENSG00000156990|Q6P087-6|RPUSD3;nc|ENSG00000156990|Q6P087-2|RPUSD3;ENSG00000156990|ENST00000383820|RPUSD3;nc|ENSG00000156990|Q6P087|RPUSD3 ENST00000464783.1_1_3:9879702-9882102:-|nuORF ENST00000464783.1_1_3:9879702-9882102:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2886047363281 2 508.287574 1014.56059 0.54454 0.00027678 0.50827 0.00025835 1.0528 0.00053513 508.2877571138652 67.645 1.1679 61.469 60.789 61.957 -6.1757 99 66 2 0 0 0 0.18465 1 44005 44005 24.674 0.65332 1 21965000 41275 6494 27448 28126 48460 48460 0.053897033642783754 MVLRLRPL 8 Unmodified _MVLRLRPL_ 0 0 0 ENST00000418326.3_1_7:47853098-47859192:+|nuORF ENST00000418326.3_1_7:47853098-47859192:+|nuORF ENST00000418326.3_1_7:47853098-47859192:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3235778808594 2 499.320597 996.626641 NaN NaN NaN NaN NaN NaN NaN 57.748 1 57.682 57.182 58.182 -0.066036 0 0 0 0.95201 1 31438 31438 10.183 0.83596 1 41276 13068 27449 28127 48461 48461 0.12819280321321003 MVMDLAFSVT 10 Unmodified _MVMDLAFSVT_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.8490905761719 3 371.848811 1112.5246 0.49384 0.00018363 0.9808 0.00036471 1.4746 0.00054834 371.8489919938547 47.58 0.32319 47.58 47.384 47.707 0 36 14 3 0 0 0 0.67033 1 26038 26038 3.3196 0 1 5814200 41277 3117 27450 28128 48462 48462 -0.027157986032307235 MVMDLAFSVT 10 Unmodified _MVMDLAFSVT_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8492736816406 3 371.848811 1112.5246 0.59891 0.0002227 0.70219 0.00026111 1.3011 0.00048381 371.8490153290545 47.713 0.27283 47.36 47.223 47.496 -0.3526 29 12 3 0 0 0 0.67033 1 25629 25629 3.3196 0.3244 1 6052800 41278 3117 27450 28128 48463 48463 -0.027157986032307235 MVMGYDHYV 9 Unmodified _MVMGYDHYV_ 0 0 0 ENSG00000171936|ENST00000641646|OR10H3 ENSG00000171936|ENST00000641646|OR10H3 ENSG00000171936|ENST00000641646|OR10H3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7401123046875 2 557.738445 1113.46234 NaN NaN NaN NaN NaN NaN NaN 21.129 1 21.129 20.629 21.629 0 0 0 0 0.82739 1 10671 10671 4.3292 1.594 1 41279 8161 27451 28129 48464 48464 -0.08985524951594925 MVNKVLVRHR 10 Unmodified _MVNKVLVRHR_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9210510253906 3 417.920403 1250.73938 0.29394 0.00012284 0.90843 0.00037965 1.2024 0.00050249 417.92067857490593 40.091 0.94405 40.096 39.688 40.633 0.0050545 154 44 4 0 0 0 0.71042 1 21303 21303 1.7423 1.7423 1 35230000 41280 10153 27452 28130 48465 48465 0.1240392904737746 MVPCIWMF 8 Unmodified _MVPCIWMF_ 0 0 0 REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF REV__ENST00000375398.6_1_10:29923707-29923890:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2521362304688 2 513.73412 1025.45369 0.59804 0.00030724 -0.78061 -0.00040103 -0.18257 -9.3793E-05 513.7336559432949 82.007 0.53409 81.512 81.185 81.72 -0.4952 25 20 2 0 0 0 8.7369 1 44955 44955 2.8892 0.31174 1 399190 + 41281 26203 27453 28131 48466 48466 -0.0580217012175126 MVPMHGVLL 9 Unmodified _MVPMHGVLL_ 0 0 0 REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7734680175781 2 498.772091 995.529629 NaN NaN NaN NaN NaN NaN NaN 97.473 1 97.23 96.73 97.73 -0.24277 0 0 0 0.38239 1 53224 53224 20.871 1.4322 1 + 41282 28318 27454 28132 48467 48467 0.03168550050054364 MVPNMLCI 8 Unmodified _MVPNMLCI_ 0 0 0 ENSG00000180988|ENST00000317037|OR52N2 ENSG00000180988|ENST00000317037|OR52N2 ENSG00000180988|ENST00000317037|OR52N2 MSMS AL20221201_MKP_PDAC_01 4 460.7235717773438 2 460.723752 919.432952 NaN NaN NaN NaN NaN NaN NaN 24.209 1 21.381 20.881 21.881 -2.8273 0 0 0 0.97348 1 13162 13162 5.7604 0 1 41283 8938 27455 28133 48468 48468 -0.029987605014298424 MVPRARKEFL 10 Unmodified _MVPRARKEFL_ 0 0 0 REV__ENSG00000135972|ENST00000258455|MRPS9 REV__ENSG00000135972|ENST00000258455|MRPS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.8562622070312 2 623.858075 1245.7016 0.85158 0.00053127 -2.8433 -0.0017738 -1.9917 -0.0012425 623.8559241468752 80.272 0.24319 79.783 79.64 79.884 -0.48933 11 9 2 0 0 0 0.69377 1 43973 43973 3.5965 0 1 421790 + 41284 20124 27456 28134 48469 48469 0.08857418061916178 MVQLTLIFVHR 11 Unmodified _MVQLTLIFVHR_ 0 0 0 ENSG00000182489|ENST00000372956|XKRX ENSG00000182489|ENST00000372956|XKRX ENSG00000182489|ENST00000372956|XKRX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.9338989257812 3 452.932197 1355.77476 NaN NaN NaN NaN NaN NaN NaN 85.54 1 85.602 85.102 86.102 0.061638 0 0 0 0.94011 1 47351 47351 2.4348 0.52841 1 41285 9059 27457 28135 48470 48470 0.11110546784516373 MVQPRRTEF 9 Unmodified _MVQPRRTEF_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.871337890625 3 388.537847 1162.59171 -0.54224 -0.00021068 -1.5006 -0.00058302 -2.0428 -0.0007937 388.5370634381564 17.803 0.093107 17.816 17.77 17.863 0.013865 40 22 3 0 0 0 0.57331 1 8867 8867 2.9952 1.8019 1 927040 + 41286 21041 27458 28136 48471 48471 0.016919927227263543 MVQPRRTEF 9 Unmodified _MVQPRRTEF_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 388.537847 1162.59171 -0.54224 -0.00021068 -1.5006 -0.00058302 -2.0428 -0.0007937 388.5370634381564 17.803 0.093107 17.816 17.77 17.863 0.013865 0.021723 0.00086124 NaN 2.9952 40 22 3 NaN NaN NaN NaN 0 NaN NaN 0 927040 + 41287 21041 27458 28136 0.016919927227263543 MVQPRRTEF 9 Unmodified _MVQPRRTEF_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.537847 1162.59171 -0.013265 -5.1541E-06 -2.7187 -0.0010563 -2.732 -0.0010615 388.53678253671364 17.768 0.15228 17.773 17.716 17.868 0.0050564 -0.021723 -0.00055867 NaN 2.9952 21 9 4 NaN NaN NaN NaN 0 NaN NaN 0 9543900 + 41288 21041 27458 28136 0.016919927227263543 MVQRPSLWF 9 Unmodified _MVQRPSLWF_ 0 0 0 REV__ENST00000509410.1_1_5:33461160-33466106:+|nuORF REV__ENST00000509410.1_1_5:33461160-33466106:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8776245117188 3 388.539188 1162.59573 0.73909 0.00028716 2.5441 0.00098849 3.2832 0.0012757 388.5394513681217 17.315 0.12006 14.728 14.634 14.754 -2.5866 27 17 2 0 0 0 0.54444 1 8999 8999 2.7352 0 1 3221200 + 41289 18866 27459 28137 48472 48472 0.020940822164220663 MVRMKSMFAI 10 Unmodified _MVRMKSMFAI_ 0 0 0 ENSG00000143183|ENST00000367881|TMCO1;nc|ENSG00000143183|Q9UM00-2|TMCO1;nc|ENSG00000143183|Q9UM00|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 ENSG00000143183|ENST00000367881|TMCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.21337890625 3 405.213319 1212.61813 0.67161 0.00027215 -1.4596 -0.00059143 -0.78795 -0.00031929 405.2130936714532 46.992 0.25219 46.655 46.503 46.756 -0.33664 29 12 3 0 0 0 0.62068 1 25143 25143 5.7834 0 1 11003000 41290 5472 27460 28138 48473 48473 0.020322222982031235 MVSLRPTRAW 10 Unmodified _MVSLRPTRAW_ 0 0 0 REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.83251953125 2 608.8346 1215.65465 -0.33789 -0.00020572 -3.7116 -0.0022598 -4.0495 -0.0024655 609.3338859197554 71.397 0.25146 71.397 71.237 71.488 0 17 13 2 0 0 0 0.70951 1 39729 39729 1.8442 0.19162 1 783310 + 41291 27282 27461 28139 48474 48474 0.05544558510769093 MVTEIRLKY 9 Unmodified _MVTEIRLKY_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8890991210938 3 384.886365 1151.63727 1.5139 0.00058269 2.5816 0.00099364 4.0956 0.0015763 384.8877092037077 50.365 0.26032 44.826 44.71 44.971 -5.5391 30 16 2 0 0 0 0.46501 1 31592 31592 9.544 6.5487 1 18724000 41292 9729 27462 28140 48475 48475 0.06751218185104335 MVTHPRSL 8 Unmodified _MVTHPRSL_ 0 0 0 nc|ENSG00000167191|Q9NZH0-2|GPRC5B nc|ENSG00000167191|Q9NZH0-2|GPRC5B nc|ENSG00000167191|Q9NZH0-2|GPRC5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7525634765625 2 470.755287 939.496021 0.42798 0.00020147 -0.058204 -2.74E-05 0.36977 0.00017407 470.75530210884926 84.388 0.34637 78.212 78.068 78.414 -6.1757 29 19 2 0 0 0 0.77907 1 55610 55610 10.183 0.83596 1 18254000 41293 16357 27463 28141 48476 48476 0.023852646024920432 MVTHYLSS 8 Unmodified _MVTHYLSS_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF ENSG00000136381|ENST00000258886|IREB2 MSMS AL20221201_MKP_PDAC_01 4 469.224365234375 2 469.226028 936.437503 NaN NaN NaN NaN NaN NaN NaN 46.839 1 41.759 41.259 42.259 -5.0805 0 0 0 0.77249 1 29002 29002 24.674 3.8027 1 41294 4818;15300 27464 28142 48477 48477 -0.03325836762644485 MVTRVMFL 8 Unmodified _MVTRVMFL_ 0 0 0 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7739562988281 2 498.772091 995.529629 1.7881 0.00089186 3.9345 0.0019624 5.7226 0.0028543 498.7737730931452 100.89 0.17503 94.71 94.623 94.798 -6.1757 25 10 4 0 0 0 0.44122 1 67560 67560 40.449 2.2974 1 59426000 41295 1488 27465 28143 48478 48478 0.031685500500316266 MVTVLTTIL 9 Unmodified _MVTVLTTIL_ 0 0 0 REV__ENST00000343137.8_1_1:14106001-14106046:+|nuORF REV__ENST00000343137.8_1_1:14106001-14106046:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.7990112304688 2 495.798829 989.583104 NaN NaN NaN NaN NaN NaN NaN 101.55 1 95.375 94.875 95.875 -6.1757 0 0 0 0.6306 1 68143 68143 11.64 0.81637 1 + 41296 25732 27466 28144 48479 48479 0.08789626033546938 MVVCCIVLL 9 Unmodified _MVVCCIVLL_ 0 0 0 REV__ENSG00000171180|ENST00000641868|OR2M4 REV__ENSG00000171180|ENST00000641868|OR2M4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7713623046875 2 496.770702 991.526852 0.68053 0.00033807 -0.52142 -0.00025903 0.15911 7.9041E-05 496.7704486360476 73.04 0.35339 72.564 72.363 72.717 -0.47588 33 15 3 0 0 0 0.53666 1 40043 40043 5.2307 0 1 1062900 + 41297 22538 27467 28145 48480 48480 0.03074958600871014 MVVDIVQEL 9 Oxidation (M) _M(Oxidation (M))VVDIVQEL_ M(1)VVDIVQEL M(71)VVDIVQEL 0 0 1 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.281005859375 2 531.281 1060.54745 0.59068 0.00031382 -0.80463 -0.00042748 -0.21394 -0.00011366 531.2806290673233 74.421 0.55632 74.421 74.137 74.693 0 94 25 5 0 0 0 0.013323 2 41389 41389;41484 71.134 35.007 1 49521000 41298 6701 27468 28146 48481;48482 48481 1167 0.019595437858924925 MVVDIVQEL 9 Oxidation (M) _M(Oxidation (M))VVDIVQEL_ M(1)VVDIVQEL M(57)VVDIVQEL 0 0 1 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2811279296875 2 531.281 1060.54745 0.52451 0.00027866 -0.17332 -9.2082E-05 0.35119 0.00018658 531.280977454568 82.594 0.80266 76.418 76.044 76.846 -6.1757 121 44 4 0 0 0 0.026094 2 54204 54204;54335 57.471 23.369 1 82951000 41299 6701 27468 28146 48483;48484 48483 1167 0.019595437858924925 MVVDIVQEL 9 Unmodified _MVVDIVQEL_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2837524414062 2 523.283543 1044.55253 0.45023 0.0002356 0.028953 1.5151E-05 0.47918 0.00025075 523.2832634494683 84.182 0.27437 84.182 84.066 84.34 0 25 13 3 0 0 0 0.39863 1 46655 46655 12.532 1.7076 1 545170 41300 6701 27468 28147 48485 48485 0.032038476485013234 MVVDIVQEL 9 Unmodified _MVVDIVQEL_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2838134765625 2 523.283543 1044.55253 NaN NaN NaN NaN NaN NaN NaN 84.756 1 84.256 83.756 84.756 -0.49961 0 0 0 0.6032 1 46379 46379 12.532 1.7076 1 41301 6701 27468 28147 48486 48486 0.032038476485013234 MVVDIVQEL 9 Unmodified _MVVDIVQEL_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2841186523438 2 523.283543 1044.55253 0.77585 0.00040599 -0.75575 -0.00039547 0.0201 1.0518E-05 523.2835619585225 93.558 0.99657 87.382 87.067 88.064 -6.1757 141 62 3 0 0 0 0.026094 4 61905 61905;62042;62177;62315 57.471 25.166 1 71333000 41302 6701 27468 28147 48487;48488;48489;48490 48487 0.032038476485013234 MVVDIVQEL 9 Unmodified _MVVDIVQEL_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 523.283543 1044.55253 0.44963 0.00023528 -0.60583 -0.00031702 -0.1562 -8.1737E-05 523.282891648756 87.079 0.22234 87.079 86.934 87.156 0 -0.15147 0.0001239 NaN 57.471 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 254900 41303 6701 27468 28147 0.032038476485013234 MVVDLKNLLF 10 Unmodified _MVVDLKNLLF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.8077392578125 2 596.343935 1190.67332 0.93044 0.00055486 -1.1906 -0.00070999 -0.26013 -0.00015513 596.3439776246001 100.11 0.093407 93.931 93.884 93.978 -6.1757 7 5 2 0 0 0 0.21783 1 66895 66895 24.021 8.1734 1 7257000 41304 16480 27469 28148 48491 48491 0.08560675361968606 MVVEERCVY 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))VVEERC(Carbamidomethyl (C))VY_ MVVEERC(1)VY M(1)VVEERCVY MVVEERC(93)VY M(93)VVEERCVY 0 1 1 ENST00000511309.5_1_5:176730986-176733129:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126964989-126965184:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7730102539062 2 600.773016 1199.53148 0.092905 5.5815E-05 0.55479 0.0003333 0.6477 0.00038912 600.7728839361666 33.241 0.39626 29.364 29.18 29.577 -3.8774 59 24 3 0 0 0 0.0082475 2 19086 18964;19086 92.653 56.526 1 35664000 41305 7853 27470 28149 48492;48493 48493 764 1333 -0.06030485722658341 MVVEERCVY 9 Carbamidomethyl (C) _MVVEERC(Carbamidomethyl (C))VY_ MVVEERC(1)VY MVVEERC(110)VY 0 1 0 ENST00000511309.5_1_5:176730986-176733129:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126964989-126965184:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.776611328125 2 592.775559 1183.53657 -0.13125 -7.7803E-05 -0.45063 -0.00026712 -0.58189 -0.00034493 592.7754247439697 41.395 0.45249 36.787 36.547 36.999 -4.6079 81 29 4 0 0 0 0.0074135 2 24772 24772;24905 110.67 74.548 1 95031000 41306 7853 27470 28150 48494;48495 48494 764 -0.0478618186004951 MVVILALPAL 10 Unmodified _MVVILALPAL_ 0 0 0 REV__ENSG00000148734|ENST00000277942|NPFFR1 REV__ENSG00000148734|ENST00000277942|NPFFR1 MSMS AL20221201_MKP_PDAC_01 4 520.3341674804688 2 520.332839 1038.65112 NaN NaN NaN NaN NaN NaN NaN 107.1 1 100.92 100.42 101.42 -6.1757 0 0 0 1.0061 1 71653 71653 0 0 1 + 41307 20965 27471 28151 48496 48496 0.13334495684171088 MVVPRPGL 8 Unmodified _MVVPRPGL_ 0 0 0 REV__nc|ENSG00000197408|P20813-2|CYP2B6 REV__nc|ENSG00000197408|P20813-2|CYP2B6 MSMS AL20221201_MKP_PDAC_01 4 434.7086181640625 2 434.757298 867.500044 NaN NaN NaN NaN NaN NaN NaN 63.298 1 57.122 56.622 57.622 -6.1757 0 0 0 0.88073 1 40900 40900 19.439 1.304 1 + 41308 23923 27472 28152 48497 48497 0.0609935409619311 MVWKVFAPKF 10 Unmodified _MVWKVFAPKF_ 0 0 0 nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO nc|ENSG00000165282|Q8TEQ8-2|PIGO nc|ENSG00000165282|Q8TEQ8-2|PIGO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.8823547363281 3 418.235217 1251.68382 -0.30457 -0.00012738 -3.6717 -0.0015357 -3.9763 -0.001663 418.2333866283769 31.479 0.15171 31.509 31.432 31.584 0.030106 11 6 2 0 0 0 0.23946 1 16535 16535 3.5871 1.5011 1 2280400 41309 7319 27473 28153 48498 48498 0.06804702807039575 MVWQIPDY 8 Unmodified _MVWQIPDY_ 0 0 0 ENST00000459686.5_1_17:27945497-27949916:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6 ENST00000459686.5_1_17:27945497-27949916:-|nuORF ENST00000459686.5_1_17:27945497-27949916:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.24951171875 2 526.249503 1050.48445 NaN NaN NaN NaN NaN NaN NaN 67.459 1 67.459 66.959 67.959 0 0 0 0 0.95607 1 37616 37616 9.3474 0 1 41310 13630 27474 28154 48499 48499 -0.038769772115074375 MVWVVMPLLW 10 Unmodified _MVWVVMPLLW_ 0 0 0 REV__ENST00000428149.6_1_11:107427689-107431525:-|nuORF REV__ENST00000428149.6_1_11:107427689-107431525:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1273.886108398438 1 1273.68357 1272.67629 0.15548 0.00019804 0.12143 0.00015466 0.27691 0.0003527 1273.685458674129 65.345 0.5732 64.861 64.448 65.021 -0.48428 38 26 2 0 0 0 0.24012 1 35657 35657 0 0 1 1675900 + 41311 26933 27475 28155 48500 48500 0.050862272151334764 MVYLFTLFF 9 Unmodified _MVYLFTLFF_ 0 0 0 ENSG00000187616|ENST00000339996|MYMK ENSG00000187616|ENST00000339996|MYMK ENSG00000187616|ENST00000339996|MYMK MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2088012695312 3 394.208556 1179.60384 0.38104 0.00015021 -0.011043 -4.3532E-06 0.37 0.00014586 394.2084695968133 15.974 0.5163 13.417 13.174 13.69 -2.557 258 108 3 0 0 0 0.48152 1 8142 8142 5.2969 0.76802 1 26501000 41312 9574 27476 28156 48501 48501 0.021222164132041144 MVYTIFVVL 9 Unmodified _MVYTIFVVL_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS AL20221201_MKP_PDAC_01 4 362.2099304199219 3 362.208556 1083.60384 NaN NaN NaN NaN NaN NaN NaN 43.713 1 38.948 38.448 39.448 -4.7648 0 0 0 0.57317 1 26588 26588 8.7454 1.1365 1 41313 1335 27477 28157 48502 48502 0.06538216413196096 MWARDEEQRLY 11 Unmodified _MWARDEEQRLY_ 0 0 0 REV__ENSG00000226792|ENST00000563710|C13orf42 REV__ENSG00000226792|ENST00000563710|C13orf42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 748.8486328125 2 748.851175 1495.6878 -0.48942 -0.00036651 -2.3275 -0.0017429 -2.8169 -0.0021094 748.8487037268226 60.949 0.36161 60.46 60.313 60.674 -0.48932 40 17 3 0 0 0 0.65846 1 33179 33179 8.1555 1.9497 1 5309300 + 41314 24394 27478 28158 48503 48503 -0.040219042278522465 MWARDEEQRLY 11 Unmodified _MWARDEEQRLY_ 0 0 0 REV__ENSG00000226792|ENST00000563710|C13orf42 REV__ENSG00000226792|ENST00000563710|C13orf42 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 748.851175 1495.6878 -0.48942 -0.00036651 -2.3275 -0.0017429 -2.8169 -0.0021094 748.8487037268226 60.949 0.36161 60.46 60.313 60.674 -0.48932 0.097503 -0.00038381 NaN 8.1555 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5309300 + 41315 24394 27478 28158 -0.040219042278522465 MWDQRLVRL 9 Oxidation (M) _M(Oxidation (M))WDQRLVRL_ M(1)WDQRLVRL M(46)WDQRLVRL 0 0 1 ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5572509765625 3 411.55713 1231.64956 0.79551 0.0003274 -0.48285 -0.00019872 0.31266 0.00012868 411.556995388952 50.521 0.28279 50.467 50.325 50.608 -0.053871 36 13 3 0 0 0 0.047714 1 27287 27287 45.74 34.245 1 15793000 41316 10165 27479 28159 48504 48504 1656 0.04300254648137525 MWDQRLVRL 9 Unmodified _MWDQRLVRL_ 0 0 0 ENSG00000198826|ENST00000361627|ARHGAP11A;nc|ENSG00000198826|Q6P4F7-2|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A ENSG00000198826|ENST00000361627|ARHGAP11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2260437011719 3 406.225492 1215.65465 1.4421 0.00058583 1.024 0.00041597 2.4661 0.0010018 406.2256199196835 79.353 0.75269 73.177 72.712 73.464 -6.1757 73 42 3 0 0 0 0.047196 2 51914 51781;51914 34.932 19.193 1 17591000 41317 10165 27479 28160 48505;48506 48506 0.05544558510769093 MWDTRIAKL 9 Unmodified _MWDTRIAKL_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5430297851562 3 378.54271 1132.6063 1.2101 0.00045809 -0.42823 -0.0001621 0.78192 0.00029599 378.5425661835912 49.945 0.22285 49.896 49.784 50.006 -0.048824 19 10 2 0 0 0 0.35911 1 27021 27021 14.405 2.8875 1 3817600 41318 4305 27480 28161 48507 48507 0.04530064870846218 MWDTRIAKL 9 Unmodified _MWDTRIAKL_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.543701171875 3 378.54271 1132.6063 1.6294 0.00061681 -0.85244 -0.00032268 0.77701 0.00029413 378.5424445253586 55.485 0.41933 49.564 49.334 49.753 -5.9211 65 25 3 0 0 0 0.21589 1 35194 35194 21.59 1.1756 1 54105000 41319 4305 27480 28161 48508 48508 0.04530064870846218 MWDTRIAKL 9 Unmodified _MWDTRIAKL_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MSMS AL20221201_MKP_PDAC_01 4 567.313232421875 2 567.310426 1132.6063 NaN NaN NaN NaN NaN NaN NaN 55.413 1 49.492 48.992 49.992 -5.9211 0 0 0 0.061499 1 35275 35275 49.554 13.51 1 41320 4305 27480 28161 48509 48509 0.04530064870846218 MWDTRIAKL 9 Oxidation (M) _M(Oxidation (M))WDTRIAKL_ M(1)WDTRIAKL M(57)WDTRIAKL 0 0 1 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3095092773438 2 575.307884 1148.60121 NaN NaN NaN NaN NaN NaN NaN 44.962 1 44.94 44.44 45.44 -0.022064 0 0 0 0.050854 1 24137 24137 57.249 22.847 1 41321 4305 27480 28162 48510 48510 772 0.03285761008237387 MWDTRIAKL 9 Oxidation (M) _M(Oxidation (M))WDTRIAKL_ M(1)WDTRIAKL M(50)WDTRIAKL 0 0 1 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3087158203125 2 575.307884 1148.60121 0.97406 0.00056039 2.0611 0.0011857 3.0351 0.0017461 575.3086965003043 49.981 0.47999 44.441 44.167 44.647 -5.5391 45 30 2 0 0 0 0.040733 1 31287 31287 49.527 21.898 1 23388000 41322 4305 27480 28162 48511 48511 772 0.03285761008237387 MWDTRIAKL 9 Oxidation (M) _M(Oxidation (M))WDTRIAKL_ M(1)WDTRIAKL M(65)WDTRIAKL 0 0 1 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3076171875 2 575.307884 1148.60121 1.1819 0.00067995 -0.44958 -0.00025865 0.73231 0.00042131 575.3074529563982 50.343 0.28165 44.804 44.647 44.929 -5.5391 35 17 3 0 0 0 0.018061 1 31570 31570 65.474 23.634 1 18244000 41323 4305 27480 28162 48512 48512 772 0.03285761008237387 MWFFYALI 8 Unmodified _MWFFYALI_ 0 0 0 ENSG00000174564|ENST00000329582|IL20RB ENSG00000174564|ENST00000329582|IL20RB ENSG00000174564|ENST00000329582|IL20RB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7733154296875 2 545.775157 1089.53576 0.23956 0.00013074 -1.4792 -0.00080729 -1.2396 -0.00067654 545.7742807838991 76.201 0.30577 76.201 76.064 76.37 0 35 12 3 0 0 0 0.80044 1 42448 42448 6.3541 0.62225 1 3874900 41324 8434 27481 28163 48513 48513 -0.005426084467899273 MWFIWSSYL 9 Unmodified _MWFIWSSYL_ 0 0 0 REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF REV__ENST00000562237.5_1_16:69200987-69202772:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5311279296875 3 411.531811 1231.5736 -0.68803 -0.00028315 -1.2115 -0.00049855 -1.8995 -0.0007817 411.5313232883825 29.989 0.1895 29.989 29.847 30.036 0 12 8 2 0 0 0 0.58865 1 15545 15545 1.0715 0.29493 1 1187500 + 41325 28852 27482 28164 48514 48514 -0.03292142251984842 MWHPLYCI 8 Unmodified _MWHPLYCI_ 0 0 0 REV__ENST00000583051.1_1_18:24412068-24412179:-|nuORF REV__ENST00000583051.1_1_18:24412068-24412179:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.748046875 2 531.748616 1061.48268 0.034436 1.8311E-05 1.6844 0.0008957 1.7189 0.00091401 531.7494841793196 52.019 0.66596 52.019 51.71 52.376 0 43 29 2 0 0 0 0.76859 1 28713 28713 11.114 0.31496 1 3276000 + 41326 17459 27483 28165 48515 48515 -0.0456030950110744 MWKHIYDYN 9 Unmodified _MWKHIYDYN_ 0 0 0 ENSG00000184378|ENST00000330368|ACTRT3 ENSG00000184378|ENST00000330368|ACTRT3 ENSG00000184378|ENST00000330368|ACTRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.2886352539062 2 635.289691 1268.56483 NaN NaN NaN NaN NaN NaN NaN 17.525 1 17.539 17.039 18.039 0.013865 0 0 0 0.85852 1 8722 8722 0.45834 0.057624 1 41327 9251 27484 28166 48516 48516 -0.05871115888476197 MWMRWHGTI 9 Unmodified _MWMRWHGTI_ 0 0 0 REV__ENST00000261654.9_1_12:131451025-131456041:+|nuORF REV__ENST00000261654.9_1_12:131451025-131456041:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5281677246094 3 406.528406 1216.56339 -0.77076 -0.00031333 2.8623 0.0011636 2.0916 0.00085029 406.8639934763631 27.762 0.18628 27.762 27.659 27.845 0 12 8 2 0 0 0 0.49272 1 14328 14328 4.897 0 1 1524100 + 41328 24999 27485 28167 48517 48517 -0.036230284581961314 MWPADVKMIQG 11 Unmodified _MWPADVKMIQG_ 0 0 0 REV__ENSG00000110887|ENST00000228476|DAO REV__ENSG00000110887|ENST00000228476|DAO MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.3146362304688 2 638.314851 1274.61515 0.34482 0.0002201 -0.76982 -0.00049139 -0.425 -0.00027128 638.314318474118 26.952 0.70956 23.916 23.57 24.28 -3.0365 134 36 5 0 0 0 0.631 2 14740 14740;14973 8.1555 8.1555 1 323530000 + 41329 18726 27486 28168 48518;48519 48518 -0.011173295549724571 MWPLVAALL 9 Unmodified _MWPLVAALL_ 0 0 0 nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47 nc|ENSG00000196776|Q08722-2|CD47 nc|ENSG00000196776|Q08722-2|CD47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2967529296875 2 507.296256 1012.57796 1.0369 0.000526 -0.98498 -0.00049968 0.051892 2.6325E-05 507.2957142080589 102.51 0.2392 96.338 96.193 96.432 -6.1757 56 30 3 0 0 0 0.1492 1 68766 68766 28.173 13.592 1 11449000 41330 9868 27487 28169 48520 48520 0.07217366961583593 MWRAEVQHQYK 11 Unmodified _MWRAEVQHQYK_ 0 0 0 ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 738.3674926757812 2 738.364253 1474.71395 NaN NaN NaN NaN NaN NaN NaN 46.746 1 41.665 41.165 42.165 -5.0805 0 0 0 0.85892 1 28936 28936 16.149 7.4037 1 41331 14462 27488 28170 48521 48521 -0.004415902657001425 MWRHAWVEF 9 Unmodified _MWRHAWVEF_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2030944824219 3 421.202687 1260.58623 -0.53623 -0.00022586 -0.68447 -0.0002883 -1.2207 -0.00051416 421.20262952799163 18.904 0.22592 18.904 18.739 18.965 0 38 19 3 0 0 0 0.54816 1 9372 9372 4.5289 0.33936 1 2256500 + 41332 20468 27489 28171 48522 48522 -0.03363686069087635 MWRRWLPMH 9 Unmodified _MWRRWLPMH_ 0 0 0 REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF REV__ENST00000391992.3_1_12:9181361-9181625:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.831298828125 2 656.831337 1311.64812 NaN NaN NaN NaN NaN NaN NaN 95.655 1 95.655 95.155 96.155 0 0 0 0 0.8622 1 52869 52869 0 0 1 + 41333 26379 27490 28172 48523 48523 0.004763420784001937 MWRSERHDF 9 Unmodified _MWRSERHDF_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.287841796875 2 632.288014 1262.56147 0.073086 4.6211E-05 0.01391 8.7949E-06 0.086996 5.5006E-05 632.2880174842705 95.801 0.32301 95.433 95.273 95.596 -0.36815 46 19 3 0 0 0 0.61256 1 52397 52397 0.6015 0 1 825250 + 41334 21267 27491 28173 48524 48524 -0.05930365942458593 MWTEAVRKL 9 Unmodified _MWTEAVRKL_ 0 0 0 REV__nc|ENSG00000174473|Q49A17-2|GALNTL6 REV__nc|ENSG00000174473|Q49A17-2|GALNTL6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.2415466308594 3 378.54271 1132.6063 1.2155 0.00046013 1.4816 0.00056085 2.6971 0.001021 378.54353702054726 65.086 0.11769 58.911 58.823 58.941 -6.1757 8 5 3 0 0 0 0.209 1 42166 42166 7.609 4.2893 1 5022700 + 41335 22793 27492 28174 48525 48525 0.04530064870868955 MWTLVPGCNL 10 Unmodified _MWTLVPGCNL_ 0 0 0 REV__ENSG00000004777|ENST00000007510|ARHGAP33 REV__ENSG00000004777|ENST00000007510|ARHGAP33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8555603027344 3 378.520917 1132.54092 0.25903 9.805E-05 0.84834 0.00032111 1.1074 0.00041916 378.5213704526759 31.323 0.25664 31.221 31.053 31.309 -0.10269 16 9 2 0 0 0 0.67413 1 16281 16281 5.7834 0.48655 1 1339700 + 41336 16949 27493 28175 48526 48526 -0.0200467264648978 MWVKCHPQP 9 Unmodified _MWVKCHPQP_ 0 0 0 ENST00000475162.3_1_1:43392549-43396385:-|nuORF ENST00000475162.3_1_1:43392549-43396385:-|nuORF ENST00000475162.3_1_1:43392549-43396385:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.7454833984375 2 563.270247 1124.52594 1.1751 0.0006619 0.21605 0.0001217 1.3912 0.00078359 563.2701260991005 34.903 0.30508 30.808 30.668 30.973 -4.0951 22 17 2 0 0 0 0.19891 1 20176 20176 7.2892 0 1 4901900 41337 13953 27494 28176 48527 48527 -0.03134119723836193 MYAKETVGFGM 11 Unmodified _MYAKETVGFGM_ 0 0 0 ENSG00000116586|ENST00000368305|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2 ENSG00000116586|ENST00000368305|LAMTOR2 ENSG00000116586|ENST00000368305|LAMTOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8598022460938 3 411.859598 1232.55697 0.32147 0.0001324 -0.14322 -5.8985E-05 0.17826 7.3416E-05 411.85978362711336 59.345 0.23652 58.854 58.75 58.987 -0.49079 29 10 4 0 0 0 0.73114 1 32286 32286 1.3296 0.11481 1 2251100 41338 3231 27495 28177 48528 48528 -0.05001011200283756 MYAMSEDF 8 Unmodified _MYAMSEDF_ 0 0 0 REV__ENST00000443137.5_1_7:13935493-13947427:-|nuORF REV__ENST00000443137.5_1_7:13935493-13947427:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.1893310546875 2 497.188254 992.361955 NaN NaN NaN NaN NaN NaN NaN 40.479 1 40.479 39.979 40.979 0 0 0 0 0.97348 1 21756 21756 5.7604 1.0044 1 + 41339 16991 27496 28178 48529 48529 -0.13453182005241615 MYASDAFF 8 Unmodified _MYASDAFF_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.1994323730469 2 476.199479 950.384405 NaN NaN NaN NaN NaN NaN NaN 15.107 1 15.093 14.593 15.593 -0.014067 0 0 0 0.97444 1 7395 7395 0.79363 0 1 41340 2714 27497 28179 48530 48530 -0.09277214545318202 MYAWEKSFTN 10 Unmodified _MYAWEKSFTN_ 0 0 0 nc|ENSG00000140798|Q96J65-4|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-3|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12;nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12 nc|ENSG00000140798|Q96J65-4|ABCC12 nc|ENSG00000140798|Q96J65-4|ABCC12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.7947998046875 3 426.193746 1275.55941 NaN NaN NaN NaN NaN NaN NaN 0.018658 1 -0.055261 -0.55526 0.44474 -0.07392 0 0 0 1.0029 1 8 8 0.12286 0.039514 1 41341 5269 27498 28180 48531 48531 -0.06734839470937004 MYCSMPEV 8 Unmodified _MYCSMPEV_ 0 0 0 REV__ENSG00000088854|ENST00000252032|DNAAF9 REV__ENSG00000088854|ENST00000252032|DNAAF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.187255859375 2 480.1872 958.359846 0.50477 0.00024238 1.5255 0.00073255 2.0303 0.00097493 480.1876300551281 53.148 0.34541 53.148 52.982 53.327 0 34 15 3 0 0 0 0.80624 1 29514 29514 2.8892 0 1 3668400 + 41342 17814 27499 28181 48532 48532 -0.12099934014690916 MYEDKTEEL 9 Unmodified _MYEDKTEEL_ 0 0 0 nc|ENSG00000163749|Q5M9N0-2|CCDC158;nc|ENSG00000163749|Q5M9N0|CCDC158;ENSG00000163749|ENST00000682701|CCDC158 nc|ENSG00000163749|Q5M9N0-2|CCDC158 nc|ENSG00000163749|Q5M9N0-2|CCDC158 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.8743286132812 3 386.505878 1156.49581 1.5617 0.00060362 2.3951 0.00092573 3.9569 0.0015293 386.50677682324095 20.969 0.22358 18.276 18.134 18.358 -2.693 18 11 2 0 0 0 0.21367 1 11179 11179 2.7352 0 1 2211200 41343 7062 27500 28182 48533 48533 -0.07618244698687704 MYEFGNRGF 9 Unmodified _MYEFGNRGF_ 0 0 0 REV__CON__Q2HJF0 REV__CON__Q2HJF0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7461547851562 2 560.747659 1119.48076 0.59688 0.0003347 0.38034 0.00021327 0.97722 0.00054797 560.7477789258778 93.093 0.38873 92.635 92.473 92.862 -0.4574 47 19 3 0 0 0 0.4887 1 50829 50829 1.8442 1.8442 1 2989000 + + 41344 16867 27501 28183 48534 48534 -0.07419646985340478 MYEPTLGTYP 10 Unmodified _MYEPTLGTYP_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5284729003906 3 391.182847 1170.52671 -0.82135 -0.0003213 0.47155 0.00018446 -0.3498 -0.00013684 391.183199164422 32.99 0.19891 32.99 32.889 33.088 0 11 9 2 0 0 0 0.23986 1 17317 17317 0.69767 0.69767 1 932430 + 41345 17230 27502 28184 48535 48535 -0.05173046593768049 MYEPTLGTYP 10 Unmodified _MYEPTLGTYP_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.182847 1170.52671 -0.23066 -9.0232E-05 1.9396 0.00075874 1.7089 0.00066851 391.1835897482147 33.069 0.24195 32.91 32.81 33.052 -0.15918 -0.040222 0.00072932 NaN 0.69767 19 9 4 NaN NaN NaN NaN 0 NaN NaN 0 2166300 + 41346 17230 27502 28184 -0.05173046593768049 MYFAVPWF 8 Unmodified _MYFAVPWF_ 0 0 0 REV__GDPD4|p.V127M|1|0.28|ENSG00000178795|chr11:77271151-77271151|C/T|missense_variant REV__GDPD4|p.V127M|1|0.28|ENSG00000178795|chr11:77271151-77271151|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7533569335938 2 530.751682 1059.48881 0.4602 0.00024425 3.7229 0.0019759 4.183 0.0022202 531.2548831738525 71.692 0.34149 71.216 71.022 71.363 -0.47609 19 13 2 0 0 0 0.80044 1 39241 39241 6.3541 1.1234 1 483440 + 41347 29349 27503 28185 48536 48536 -0.038554679979597495 MYFAVPWF 8 Unmodified _MYFAVPWF_ 0 0 0 REV__GDPD4|p.V127M|1|0.28|ENSG00000178795|chr11:77271151-77271151|C/T|missense_variant REV__GDPD4|p.V127M|1|0.28|ENSG00000178795|chr11:77271151-77271151|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 530.751682 1059.48881 0.4602 0.00024425 3.7229 0.0019759 4.183 0.0022202 531.2548831738525 71.692 0.34149 71.216 71.022 71.363 -0.47609 0 0 NaN 6.3541 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 483440 + 41348 29349 27503 28185 -0.038554679979597495 MYFFLRHLAFM 11 Unmodified _MYFFLRHLAFM_ 0 0 0 ENSG00000280314|ENST00000641662|OR8K3 ENSG00000280314|ENST00000641662|OR8K3 ENSG00000280314|ENST00000641662|OR8K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.5799255371094 3 492.582399 1474.72537 -0.37523 -0.00018483 -0.70872 -0.0003491 -1.0839 -0.00053393 492.5821976718053 17.652 0.092243 17.666 17.603 17.695 0.013865 31 17 2 0 0 0 0.74157 1 8774 8774 0.094841 0.021578 1 933240 41349 10947 27504 28186 48537 48537 0.006995155040613099 MYFFRTCLVPI 11 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))YFFRTC(Carbamidomethyl (C))LVPI_ MYFFRTC(1)LVPI M(1)YFFRTCLVPI MYFFRTC(50)LVPI M(50)YFFRTCLVPI 0 1 1 ENST00000279052.10_1_20:34130319-34130576:+|nuORF ENST00000279052.10_1_20:34130319-34130576:+|nuORF ENST00000279052.10_1_20:34130319-34130576:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 731.8660278320312 2 731.864708 1461.71486 1.1201 0.00081977 -0.27866 -0.00020394 0.84145 0.00061583 731.8650264170907 98.413 0.16009 92.237 92.148 92.308 -6.1757 30 10 4 0 0 0 0.055321 1 65249 65249 49.742 41.586 1 55409000 41350 11401 27505 28187 48538 48538 965 1746 0.002474880589716122 MYFFRTCLVPI 11 Carbamidomethyl (C) _MYFFRTC(Carbamidomethyl (C))LVPI_ MYFFRTC(1)LVPI MYFFRTC(73)LVPI 0 1 0 ENST00000279052.10_1_20:34130319-34130576:+|nuORF ENST00000279052.10_1_20:34130319-34130576:+|nuORF ENST00000279052.10_1_20:34130319-34130576:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.8684692382812 2 723.867251 1445.71995 0.11837 8.5681E-05 0.73576 0.00053259 0.85413 0.00061827 723.868460515222 99.778 0.16158 93.602 93.49 93.652 -6.1757 24 10 3 0 0 0 0.0062377 1 66551 66551 73.196 60.956 1 68734000 41351 11401 27505 28188 48539 48539 965 0.014917919215804432 MYFRMKDEVF 10 Unmodified _MYFRMKDEVF_ 0 0 0 ENST00000496409.1_1_22:38511815-38516980:-|nuORF;nc|ENSG00000184381|O60733-2|PLA2G6;ENSG00000184381|ENST00000332509|PLA2G6 ENST00000496409.1_1_22:38511815-38516980:-|nuORF ENST00000496409.1_1_22:38511815-38516980:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.3214721679688 2 683.320134 1364.62571 0.2422 0.0001655 0.1203 8.2206E-05 0.3625 0.00024771 683.3203461686468 55.149 0.41149 54.671 54.45 54.861 -0.47798 53 19 4 0 0 0 0.62068 1 29964 29964 10.074 2.9722 1 9628900 41352 9252 27506 28189 48540 48540 -0.04201346900549652 MYFWKRFCFWK 11 Unmodified _MYFWKRFCFWK_ 0 0 0 nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;ENSG00000121446|ENST00000294854|RGSL1 nc|ENSG00000121446|A5PLK6-3|RGSL1 nc|ENSG00000121446|A5PLK6-3|RGSL1 MSMS AL20221201_MKP_PDAC_01 4 821.39697265625 2 821.39651 1640.77847 NaN NaN NaN NaN NaN NaN NaN 99.702 1 93.526 93.026 94.026 -6.1757 0 0 0 0.94307 1 66472 66472 0.30703 0 1 41353 3584 27507 28190 48541 48541 -0.016291067132897297 MYGLFQTSF 9 Oxidation (M) _M(Oxidation (M))YGLFQTSF_ M(1)YGLFQTSF M(47)YGLFQTSF 0 0 1 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.252197265625 2 555.252243 1108.48993 0.5526 0.00030684 -0.095484 -5.3017E-05 0.45712 0.00025382 555.2523292895507 79.01 0.34534 79.065 78.888 79.233 0.05497 39 13 4 0 0 0 0.045537 2 43589 43589;43692 46.921 25.174 1 10964000 41354 1205 27508 28191 48542;48543 48542 200 -0.059972984197202095 MYGLFQTSF 9 Unmodified _MYGLFQTSF_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2565307617188 2 547.254785 1092.49502 1.2038 0.00065881 0.80635 0.00044128 2.0102 0.0011001 547.2554259846362 96.997 0.57256 90.821 90.722 91.295 -6.1757 47 32 2 0 0 0 0.045537 2 64342 64342;64475 46.921 27.664 1 15662000 41355 1205 27508 28192 48544;48545 48544 -0.04752994557088641 MYHSFYKLVT 10 Unmodified _MYHSFYKLVT_ 0 0 0 REV__ENSG00000145632|ENST00000274289|PLK2 REV__ENSG00000145632|ENST00000274289|PLK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.822265625 2 644.823366 1287.63218 NaN NaN NaN NaN NaN NaN NaN 27.106 1 27.106 26.606 27.606 0 0 0 0 0.97302 1 13957 13957 3.5965 1.9439 1 + 41356 20783 27509 28193 48546 48546 -0.00013085677528579254 MYIDPDLLAEL 11 Oxidation (M) _M(Oxidation (M))YIDPDLLAEL_ M(1)YIDPDLLAEL M(79)YIDPDLLAEL 0 0 1 ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8243408203125 2 654.823229 1307.63191 1.1058 0.00072411 -0.025486 -1.6689E-05 1.0803 0.00070742 654.8232137254129 100.23 0.23264 94.053 93.938 94.171 -6.1757 37 13 4 0 0 0 0.0029835 1 66934 66934 78.728 53.737 1 104840000 41357 2217 27510 28194 48547 48547 381 -0.009605501880059819 MYIDPDLLAEL 11 Unmodified _MYIDPDLLAEL_ 0 0 0 ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A ENSG00000104611|ENST00000265807|SH2D4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3276977539062 2 646.825772 1291.63699 1.0104 0.00065355 -0.72209 -0.00046707 0.28831 0.00018648 646.8252857346915 101.22 0.15083 95.04 94.974 95.125 -6.1757 26 9 4 0 0 0 0.063019 1 67854 67854 69.105 27.149 1 131810000 41358 2217 27510 28195 48548 48548 0.0028375367460284906 MYIFMEYC 8 Unmodified _MYIFMEYC_ 0 0 0 ENSG00000085511|ENST00000392142|MAP3K4;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4 ENSG00000085511|ENST00000392142|MAP3K4 ENSG00000085511|ENST00000392142|MAP3K4 MSMS AL20221201_MKP_PDAC_01 4 550.2185668945312 2 550.2185 1098.42245 NaN NaN NaN NaN NaN NaN NaN 0.38878 1 -2.0932 -2.5932 -1.5932 -2.482 0 0 0 0.97444 1 206 206 0.79363 0 1 41359 1412 27511 28196 48549 48549 -0.12282787946514873 MYIIPVVLF 9 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ M(1)YIIPVVLF M(46)YIIPVVLF 0 0 1 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.816650390625 2 555.817021 1109.61949 -0.39319 -0.00021854 0.23198 0.00012894 -0.16121 -8.9604E-05 555.8173479684544 101.58 0.14561 101.53 101.46 101.61 -0.045853 11 4 4 0 0 0 0.047696 1 56438 56438 45.75 9.2838 1 34647000 41360 6803 27512 28197 48550 48550 1177 0.06906502930246461 MYIIPVVLF 9 Oxidation (M) _M(Oxidation (M))YIIPVVLF_ M(1)YIIPVVLF M(46)YIIPVVLF 0 0 1 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8182983398438 2 555.817021 1109.61949 0.83928 0.00046649 -0.43287 -0.0002406 0.40641 0.00022589 555.8170047192212 101.99 0.19643 95.814 95.68 95.877 -6.1757 24 9 4 0 0 0 0.047696 1 68450 68450 45.75 17.577 1 51563000 41361 6803 27512 28197 48551 48551 1177 0.06906502930246461 MYIIPVVLF 9 Unmodified _MYIIPVVLF_ 0 0 0 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 ENSG00000161671|ENST00000334976|EMC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8201904296875 2 547.819564 1093.62458 1.0672 0.00058464 0.61871 0.00033894 1.6859 0.00092359 547.8198772569839 102.52 0.10477 96.34 96.292 96.397 -6.1757 47 13 5 0 0 0 0.028712 1 68781 68781 56.048 19.582 1 191770000 41362 6803 27512 28198 48552 48552 0.08150806792855292 MYINDKLPYF 10 Unmodified _MYINDKLPYF_ 0 0 0 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3236083984375 2 652.323199 1302.63185 1.0773 0.00070273 -0.12626 -8.2363E-05 0.95102 0.00062037 652.3233931517526 87.709 0.70729 81.533 81.075 81.782 -6.1757 62 38 2 0 0 0 0.0042881 3 57761 57622;57761;57882 100.71 74.441 1 20280000 41363 696 27513 28199 48553;48554;48555 48554 -0.00736505397367182 MYINDKLPYF 10 Oxidation (M) _M(Oxidation (M))YINDKLPYF_ M(1)YINDKLPYF M(56)YINDKLPYF 0 0 1 nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000048028|Q96RU2|USP28;ENSG00000048028|ENST00000696973|USP28;ENST00000540438.5_1_11:113669964-113691034:-|nuORF nc|ENSG00000048028|Q96RU2-2|USP28 nc|ENSG00000048028|Q96RU2-2|USP28 MSMS AL20221201_MKP_PDAC_01 4 660.3197021484375 2 660.320657 1318.62676 NaN NaN NaN NaN NaN NaN NaN 76.275 1 70.099 69.599 70.599 -6.1757 0 0 0 0.057161 1 49893 49893 55.503 35.088 1 41364 696 27513 28200 48556 48556 108 -0.019808092599987503 MYINEVERL 9 Oxidation (M) _M(Oxidation (M))YINEVERL_ M(1)YINEVERL M(86)YINEVERL 0 0 1 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7948608398438 2 591.794806 1181.57506 0.49745 0.00029439 0.27727 0.00016409 0.77472 0.00045847 591.794860968617 46.461 0.23234 46.461 46.332 46.565 0 28 10 4 0 0 0 0.0090524 1 25393 25393 85.642 41.869 1 7921700 41365 6164 27514 28201 48557 48557 1103 -0.008465529538852934 MYINEVERL 9 Oxidation (M) _M(Oxidation (M))YINEVERL_ M(1)YINEVERL M(89)YINEVERL 0 0 1 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7969360351562 2 591.794806 1181.57506 0.23699 0.00014025 1.4546 0.00086082 1.6916 0.0010011 591.7957473857016 46.693 0.29466 46.693 46.544 46.839 0 27 11 3 0 0 0 0.0086209 1 25507 25507 89.401 53.274 1 12356000 41366 6164 27514 28201 48558 48558 1103 -0.008465529538852934 MYIRYLYKL 9 Unmodified _MYIRYLYKL_ 0 0 0 nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2 nc|ENSG00000150760|Q14185|DOCK1 MSMS AL20221201_MKP_PDAC_01 4 421.5707702636719 3 421.570377 1261.6893 NaN NaN NaN NaN NaN NaN NaN 89.147 1 82.971 82.471 83.471 -6.1757 0 0 0 0.3031 1 58837 58837 24.991 13.473 1 41367 6072;4616 27515 28202 48559 48559 0.06892381598868269 MYLEPLSMNRF 11 Unmodified _MYLEPLSMNRF_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 700.8385620117188 2 700.838691 1399.66283 -0.054934 -3.85E-05 -0.35984 -0.00025219 -0.41477 -0.00029069 700.8385116004877 45.611 0.15744 45.611 45.527 45.685 0 19 7 3 0 0 0 0.65108 1 24872 24872 8.7454 0.58988 1 4477900 41368 5731 27516 28203 48560 48560 -0.021016753547883127 MYLKITQII 9 Oxidation (M) _M(Oxidation (M))YLKITQII_ M(1)YLKITQII M(61)YLKITQII 0 0 1 ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8312377929688 2 569.83066 1137.64677 0.28775 0.00016397 -0.044909 -2.559E-05 0.24284 0.00013838 569.8306961066781 75.187 0.34167 75.233 75.025 75.367 0.045959 58 16 4 0 0 0 0.022193 2 41386 41386;41487 61.357 39.611 1 49018000 41369 14472 27517 28204 48561;48562 48561 1775 0.08344986470615368 MYLKITQII 9 Oxidation (M) _M(Oxidation (M))YLKITQII_ M(1)YLKITQII M(56)YLKITQII 0 0 1 ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8313598632812 2 569.83066 1137.64677 0.27047 0.00015412 0.76128 0.0004338 1.0317 0.00058792 569.8310433130121 75.456 0.38106 75.502 75.367 75.748 0.045959 56 17 4 0 0 0 0.028475 2 41691 41593;41691 56.177 32.156 1 40180000 41370 14472 27517 28204 48563;48564 48564 1775 0.08344986470615368 MYLKITQII 9 Unmodified _MYLKITQII_ 0 0 0 ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF ENST00000503561.7_1_5:49963943-50055521:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8339233398438 2 561.833203 1121.65185 0.47673 0.00026784 0.17554 9.8625E-05 0.65227 0.00036647 561.833363376067 98.747 0.15501 92.572 92.493 92.648 -6.1757 36 11 4 0 0 0 0.0090948 1 65538 65538 85.272 52.967 1 294300000 41371 14472 27517 28205 48565 48565 0.09589290333246936 MYLKQILYL 9 Oxidation (M) _M(Oxidation (M))YLKQILYL_ M(1)YLKQILYL M(71)YLKQILYL 0 0 1 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.83935546875 2 600.838485 1199.66242 -0.034083 -2.0479E-05 0.45866 0.00027558 0.42457 0.0002551 600.8389083553868 72.336 0.46655 72.378 72.174 72.64 0.041725 64 21 4 0 0 0 0.013472 2 39888 39787;39888 70.716 45.316 1 9283500 41372 479 27518 28206 48566;48567 48567 68 0.07057272987685792 MYLKQILYL 9 Oxidation (M) _M(Oxidation (M))YLKQILYL_ M(1)YLKQILYL M(60)YLKQILYL 0 0 1 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8385009765625 2 600.838485 1199.66242 0.39938 0.00023996 0.14496 8.7097E-05 0.54434 0.00032706 600.8382313919313 94.696 0.32853 88.521 88.332 88.66 -6.1757 41 18 3 0 0 0 0.023164 1 62658 62658 60.39 24.345 1 17412000 41373 479 27518 28206 48568 48568 68 0.07057272987685792 MYLKQILYL 9 Unmodified _MYLKQILYL_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8413696289062 2 592.841028 1183.6675 0.3625 0.0002149 0.24025 0.00014243 0.60275 0.00035733 592.8409907659953 98.643 0.11894 92.467 92.401 92.52 -6.1757 27 8 4 0 0 0 0.013472 1 65437 65437 70.716 30.758 1 122540000 41374 479 27518 28207 48569 48569 0.08301576850294623 MYLKTVDKF 9 Oxidation (M) _M(Oxidation (M))YLKTVDKF_ M(1)YLKTVDKF M(64)YLKTVDKF 0 0 1 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8035888671875 2 580.804642 1159.59473 -0.40463 -0.00023501 -1.8692 -0.0010856 -2.2738 -0.0013207 580.8034722423215 34.865 0.43531 34.865 34.675 35.11 0 40 22 3 0 0 0 0.01958 1 18409 18409 63.961 39.94 1 6782800 41375 9822 27519 28208 48570 48570 1575 0.021318230568567742 MYLKTVDKF 9 Oxidation (M) _M(Oxidation (M))YLKTVDKF_ M(1)YLKTVDKF M(110)YLKTVDKF 0 0 1 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8049926757812 2 580.804642 1159.59473 -0.33155 -0.00019257 0.73112 0.00042464 0.39957 0.00023207 580.8051175033422 35.013 0.2276 34.791 34.646 34.873 -0.2224 31 9 4 0 0 0 0.0074582 1 18301 18301 110.55 58.284 1 12380000 41376 9822 27519 28208 48571 48571 1575 0.021318230568567742 MYLKTVDKF 9 Oxidation (M) _M(Oxidation (M))YLKTVDKF_ M(1)YLKTVDKF M(110)YLKTVDKF 0 0 1 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8052978515625 2 580.804642 1159.59473 -0.35815 -0.00020802 0.42133 0.00024471 0.063172 3.6691E-05 580.8050335985763 35.191 0.21392 34.969 34.873 35.087 -0.2224 30 9 4 0 0 0 0.0087224 1 18399 18399 107.1 57.167 1 10490000 41377 9822 27519 28208 48572 48572 1575 0.021318230568567742 MYLKTVDKF 9 Oxidation (M) _M(Oxidation (M))YLKTVDKF_ M(1)YLKTVDKF M(70)YLKTVDKF 0 0 1 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5388793945312 3 387.538854 1159.59473 -0.3394 -0.00013153 0.53289 0.00020652 0.19349 7.4986E-05 387.5390007950393 35.192 0.23552 34.97 34.852 35.087 -0.2224 32 10 4 0 0 0 0.013609 1 18411 18411 70.332 49.917 1 13716000 41378 9822 27519 28208 48573 48573 1575 0.021318230568567742 MYLKTVDKF 9 Oxidation (M) _M(Oxidation (M))YLKTVDKF_ 0 0 1 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 580.804642 1159.59473 -0.36756 -0.00021348 1.3573 0.00078832 0.98973 0.00057484 580.8056148692825 35.047 0.19009 35.047 34.939 35.129 0 0.12801 0.00050828 NaN 110.55 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 5027000 41379 9822 27519 28208 1575 0.021318230568567742 MYLKTVDKF 9 Unmodified _MYLKTVDKF_ 0 0 0 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2073364257812 3 382.207216 1143.59982 0.86709 0.00033141 -0.84822 -0.00032419 0.018876 7.2147E-06 382.2069787857903 46.495 0.29454 41.415 41.244 41.538 -5.0805 79 37 3 0 0 0 0.047788 2 28649 28649;28810 42.312 20.722 1 166700000 41380 9822 27519 28209 48574;48575 48574 0.033761269194883425 MYLKTVDKF 9 Unmodified _MYLKTVDKF_ 0 0 0 nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 nc|ENSG00000196459|P0DI81-2|TRAPPC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8084716796875 2 572.807185 1143.59982 0.52028 0.00029802 -0.042 -2.4058E-05 0.47828 0.00027396 572.8069157881336 46.506 0.21206 41.425 41.29 41.502 -5.0805 35 25 2 0 0 0 0.018061 1 28656 28656 65.474 35.633 1 55849000 41381 9822 27519 28209 48576 48576 0.033761269194883425 MYLPEAKESF 10 Unmodified _MYLPEAKESF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MSMS AL20221201_MKP_PDAC_01 4 607.7903442382812 2 607.791732 1213.56891 NaN NaN NaN NaN NaN NaN NaN 59.156 1 53.081 52.581 53.581 -6.0745 0 0 0 0.16751 1 37953 37953 45.74 16.658 1 41382 1064 27520 28210 48577 48577 -0.029330711854299807 MYLYRDDQF 9 Unmodified _MYLYRDDQF_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.7821044921875 2 625.779156 1249.54376 NaN NaN NaN NaN NaN NaN NaN 62.261 1 62.261 61.761 62.761 0 0 0 0 0.76439 1 34722 34722 7.2892 2.96 1 + 41383 17428 27521 28211 48578 48578 -0.07103125988010106 MYMTVSIIDRF 11 2 Oxidation (M) _M(Oxidation (M))YM(Oxidation (M))TVSIIDRF_ M(1)YM(1)TVSIIDRF M(55)YM(55)TVSIIDRF 0 0 2 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 704.3370971679688 2 704.335981 1406.65741 1.153 0.00081207 0.13253 9.3348E-05 1.2855 0.00090542 704.3360295999857 66.329 0.54907 66.338 66.012 66.561 0.0095596 66 27 3 0 0 0 0.029924 1 36433 36433 55.249 43.754 1 4114900 41384 4553 27522 28212 48579 48579 829;830 -0.029653989372491196 MYMTVSIIDRF 11 Oxidation (M) _M(Oxidation (M))YMTVSIIDRF_ M(1)YMTVSIIDRF M(41)YM(-41)TVSIIDRF 0 0 1 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 696.3408203125 2 696.338523 1390.66249 0.63839 0.00044453 -0.23543 -0.00016394 0.40296 0.0002806 696.3381853463485 91.692 0.43329 85.517 85.233 85.666 -6.1757 37 23 2 0 0 0 0.00053139 2 60697 60569;60697 88.364 71.251 2 9864400 41385 4553 27522 28213 48580;48581 48581 829;830 -0.01721095074663026 MYMTVSIIDRF 11 Unmodified _MYMTVSIIDRF_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.3419189453125 2 688.341066 1374.66758 1.3009 0.00089549 -1.4549 -0.0010014 -0.15394 -0.00010596 688.3403185040457 97.627 0.1732 91.452 91.349 91.523 -6.1757 21 9 3 0 0 0 4.588799999999999E-21 1 64666 64666 151.48 128.74 1 49660000 41386 4553 27522 28214 48582 48582 -0.004767912120314577 MYNLFWRHF 9 Oxidation (M) _M(Oxidation (M))YNLFWRHF_ M(1)YNLFWRHF M(63)YNLFWRHF 0 0 1 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.8785400390625 3 443.878092 1328.61245 1.2937 0.00057426 0.033444 1.4845E-05 1.3272 0.00058911 443.8780159543397 63.881 0.21487 63.87 63.741 63.956 -0.010532 34 10 4 0 0 0 0.020973 1 34948 34948 62.573 50.332 1 9259700 41387 4256 27523 28215 48583 48583 755 -0.03871416897618474 MYNLFWRHF 9 Oxidation (M) _M(Oxidation (M))YNLFWRHF_ M(1)YNLFWRHF M(69)YNLFWRHF 0 0 1 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.8786926269531 3 443.878092 1328.61245 1.2938 0.00057427 -1.0802 -0.00047946 0.2136 9.481E-05 444.2120327463026 64.072 0.25788 64.062 63.956 64.214 -0.010536 34 12 4 0 0 0 0.014417 1 35079 35079 69.105 56.864 1 6188200 41388 4256 27523 28215 48584 48584 755 -0.03871416897618474 MYNLFWRHF 9 Unmodified _MYNLFWRHF_ 0 0 0 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.5465698242188 3 438.546454 1312.61753 1.4208 0.00062307 0.91599 0.0004017 2.3367 0.0010248 438.54664694076484 94.338 0.18804 88.163 88.045 88.233 -6.1757 32 10 4 0 0 0 0.014417 1 62456 62456 69.105 58.206 1 17159000 41389 4256 27523 28216 48585 48585 -0.026271130349869054 MYPAIFDQL 9 Oxidation (M) _M(Oxidation (M))YPAIFDQL_ M(1)YPAIFDQL M(47)YPAIFDQL 0 0 1 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2686157226562 2 557.267893 1112.52123 0.71894 0.00040064 1.8764 0.0010456 2.5953 0.0014463 557.2688996852834 83.66 0.67896 83.163 82.764 83.443 -0.49751 72 27 3 0 0 0 0.045537 1 45820 45820 46.921 26.05 1 2286900 41390 845 27524 28217 48586 48586 128 -0.03052725385600752 MYPAIFDQL 9 Unmodified _MYPAIFDQL_ 0 0 0 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MSMS AL20221201_MKP_PDAC_01 4 549.2698364257812 2 549.270435 1096.52632 NaN NaN NaN NaN NaN NaN NaN 99.357 1 93.181 92.681 93.681 -6.1757 0 0 0 0.18911 1 66142 66142 32.117 8.9685 1 41391 845 27524 28218 48587 48587 -0.01808421522991921 MYPCNFVSF 9 Carbamidomethyl (C),Oxidation (M) _M(Oxidation (M))YPC(Carbamidomethyl (C))NFVSF_ MYPC(1)NFVSF M(1)YPCNFVSF MYPC(64)NFVSF M(64)YPCNFVSF 0 1 1 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7434692382812 2 590.743728 1179.4729 1.3185 0.00077888 -0.73601 -0.0004348 0.58246 0.00034409 590.743448124209 79.42 0.61797 73.244 72.95 73.567 -6.1757 77 35 3 0 0 0 0.019979 3 52021 51899;52021;52158 63.563 31.257 1 24897000 41392 7378 27525 28219 48588;48589;48590 48589 722 1275 -0.10965542297140018 MYPCNFVSF 9 Carbamidomethyl (C) _MYPC(Carbamidomethyl (C))NFVSF_ MYPC(1)NFVSF MYPC(47)NFVSF 0 1 0 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.747802734375 2 582.74627 1163.47799 1.171 0.00068238 -2.5671 -0.001496 -1.3961 -0.0008136 582.7447437294421 86.784 0.46433 80.608 80.379 80.843 -6.1757 62 24 3 0 0 0 0.045537 2 57136 57136;57260 46.921 25.174 1 34708000 41393 7378 27525 28220 48591;48592 48591 722 -0.09721238434531188 MYPDVFAHF 9 Oxidation (M) _M(Oxidation (M))YPDVFAHF_ M(1)YPDVFAHF M(50)YPDVFAHF 0 0 1 ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7532958984375 2 571.75241 1141.49027 0.10197 5.8303E-05 -0.17325 -9.9057E-05 -0.071281 -4.0755E-05 571.7522660349085 69.919 0.56696 69.44 69.086 69.653 -0.47903 81 28 4 0 0 0 0.040472 3 38102 38102;38202;38309 49.669 38.029 1 8456800 41394 8346 27526 28221 48593;48594;48595 48593 1407 -0.0748187869985486 MYPDVFAHF 9 Oxidation (M) _M(Oxidation (M))YPDVFAHF_ M(1)YPDVFAHF M(57)YPDVFAHF 0 0 1 ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7525634765625 2 571.75241 1141.49027 0.43482 0.00024861 -0.29546 -0.00016893 0.13936 7.9678E-05 571.7514898068349 69.314 0.36743 69.345 69.093 69.46 0.030914 34 20 3 0 0 0 0.027803 1 38050 38050 56.541 40.694 1 5785900 41395 8346 27526 28221 48596 48596 1407 -0.0748187869985486 MYPDVFAHF 9 Oxidation (M) _M(Oxidation (M))YPDVFAHF_ M(1)YPDVFAHF M(74)YPDVFAHF 0 0 1 ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.75146484375 2 571.75241 1141.49027 0.3643 0.00020829 0.32838 0.00018775 0.69267 0.00039604 571.7523409732521 76.766 0.67248 70.59 70.392 71.065 -6.1757 53 36 2 0 0 0 0.012158 2 50304 50182;50304 74.396 58.549 1 12156000 41396 8346 27526 28221 48597;48598 48598 1407 -0.0748187869985486 MYPDVFAHF 9 Unmodified _MYPDVFAHF_ 0 0 0 ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7543334960938 2 563.754953 1125.49535 0.61294 0.00034555 0.20635 0.00011633 0.81929 0.00046188 563.7546583046197 75.324 0.2494 75.37 75.203 75.452 0.045959 18 11 2 0 0 0 0.068777 1 41550 41550 40.449 27.917 1 1602700 41397 8346 27526 28222 48599 48599 -0.06237574837223292 MYPDVFAHF 9 Unmodified _MYPDVFAHF_ 0 0 0 ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.756591796875 2 563.754953 1125.49535 1.1973 0.00067496 0.45272 0.00025522 1.65 0.00093018 563.7552786296084 87.315 0.70599 81.14 80.77 81.476 -6.1757 56 38 2 0 0 0 0.068777 2 57442 57442;57590 40.449 30.375 1 16162000 41398 8346 27526 28222 48600;48601 48600 -0.06237574837223292 MYPEMGSCMW 10 Carbamidomethyl (C) _MYPEMGSC(Carbamidomethyl (C))MW_ MYPEMGSC(1)MW MYPEMGSC(59)MW 0 1 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.234375 2 646.234355 1290.45416 0.73535 0.00047521 -0.21696 -0.00014021 0.51839 0.000335 646.2342266220605 80.954 0.37396 74.778 74.606 74.98 -6.1757 28 20 2 0 0 0 0.04925 1 53104 53104 58.679 51.956 1 14244000 41399 5077 27527 28223 48602 48602 519 -0.17945163254876206 MYPLKPTWWF 10 Unmodified _MYPLKPTWWF_ 0 0 0 nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MSMS AL20221201_MKP_PDAC_01 4 684.8438720703125 2 684.844102 1367.67365 NaN NaN NaN NaN NaN NaN NaN 99.985 1 93.809 93.309 94.309 -6.1757 0 0 0 0.45397 1 66758 66758 28.495 18.344 1 41400 6989 27528 28224 48603 48603 0.004520950818005076 MYPRLGGFVM 10 2 Oxidation (M) _M(Oxidation (M))YPRLGGFVM(Oxidation (M))_ M(1)YPRLGGFVM(1) M(42)YPRLGGFVM(42) 0 0 2 ENSG00000125755|ENST00000245934|SYMPK;ENST00000598155.5_1_19:46318820-46327397:-|nuORF ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.7886962890625 2 601.788469 1201.56239 0.17596 0.00010589 -0.27343 -0.00016455 -0.097476 -5.866E-05 601.7887971277366 53.072 0.43532 53.008 52.742 53.177 -0.063419 66 21 4 0 0 0 0.13391 2 28694 28694;28798 41.84 33.094 1 13034000 41401 3879 27529 28225 48604;48605 48604 692;693 -0.030332876177453727 MYPTRTHIF 9 Unmodified _MYPTRTHIF_ 0 0 0 ENST00000530028.2_2_15:49171343-49171373:+|nuORF ENST00000530028.2_2_15:49171343-49171373:+|nuORF ENST00000530028.2_2_15:49171343-49171373:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.1989440917969 3 389.198943 1164.575 NaN NaN NaN NaN NaN NaN NaN 43.74 1 38.975 38.475 39.475 -4.7648 0 0 0 0.65645 1 26605 26605 10.8 5.5026 1 41402 14886 27530 28226 48606 48606 -0.000705081632531801 MYPYIFHVL 9 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ M(1)YPYIFHVL M(46)YPYIFHVL 0 0 1 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8023681640625 2 599.801903 1197.58925 0.59968 0.00035969 0.085947 5.1551E-05 0.68562 0.00041124 599.8019200380918 82.8 0.84804 82.303 81.765 82.613 -0.49751 124 35 5 0 0 0 0.047696 1 45242 45242 45.75 24.879 1 5179500 41403 703 27531 28227 48607 48607 110 -0.0016385573494517303 MYPYIFHVL 9 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ M(1)YPYIFHVL M(80)YPYIFHVL 0 0 1 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8031005859375 2 599.801903 1197.58925 1.5858 0.00095114 -1.2517 -0.00075079 0.33403 0.00020035 599.8012616586942 81.864 1.0456 81.923 81.452 82.498 0.059929 177 41 6 0 0 0 0.01018 5 45200 45097;45200;45298;45410;45529 79.935 51.761 1 111040000 41404 703 27531 28227 48608;48609;48610;48611;48612 48609 110 -0.0016385573494517303 MYPYIFHVL 9 Oxidation (M) _M(Oxidation (M))YPYIFHVL_ M(1)YPYIFHVL M(94)YPYIFHVL 0 0 1 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3052368164062 2 599.801903 1197.58925 0.7147 0.00042868 -0.72873 -0.0004371 -0.014031 -8.4159E-06 599.8016205726317 97.64 0.63 91.465 91.17 91.8 -6.1757 127 38 4 0 0 0 0.0081202 3 64573 64573;64685;64812 93.763 48.013 1 348820000 41405 703 27531 28227 48613;48614;48615 48613 110 -0.0016385573494517303 MYPYIFHVL 9 Unmodified _MYPYIFHVL_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8054809570312 2 591.804445 1181.59434 -0.049666 -2.9393E-05 0.92582 0.00054791 0.87616 0.00051851 592.30640582793 88.147 0.20764 88.201 88.096 88.303 0.053352 11 8 2 0 0 0 0.10734 1 49042 49042 36.466 15.595 1 13959000 41406 703 27531 28228 48616 48616 0.010804481276863953 MYPYIFHVL 9 Unmodified _MYPYIFHVL_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8045043945312 2 591.804445 1181.59434 0.63467 0.0003756 -0.11553 -6.8374E-05 0.51914 0.00030723 591.8044579072128 99.158 0.20384 92.982 92.878 93.081 -6.1757 39 11 5 0 0 0 0.10734 1 65926 65926 36.466 15.595 1 985790000 41407 703 27531 28228 48617 48617 0.010804481276863953 MYPYIYHVL 9 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ M(1)YPYIYHVL M(46)YPYIYHVL 0 0 1 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3031616210938 2 607.79936 1213.58417 0.32006 0.00019453 0.42763 0.00025991 0.74769 0.00045444 607.799716535875 66.939 0.54186 66.456 66.194 66.736 -0.48323 57 25 3 0 0 0 0.047696 1 36598 36598 45.75 17.577 1 2131300 41408 9220 27532 28229 48618 48618 1532 -0.01408159597554004 MYPYIYHVL 9 Oxidation (M) _M(Oxidation (M))YPYIYHVL_ M(1)YPYIYHVL M(56)YPYIYHVL 0 0 1 ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C ENSG00000184083|ENST00000375180|FAM120C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3016967773438 2 607.79936 1213.58417 1.0919 0.00066368 1.27 0.00077192 2.362 0.0014356 607.800248521111 66.481 0.57375 66.49 66.051 66.624 0.0095596 39 28 2 0 0 0 0.028712 1 36424 36424 56.048 41.467 1 7556500 41409 9220 27532 28229 48619 48619 1532 -0.01408159597554004 MYQDKLASL 9 Oxidation (M) _M(Oxidation (M))YQDKLASL_ M(1)YQDKLASL M(72)YQDKLASL 0 0 1 ENSG00000111707|ENST00000543473|SUDS3 ENSG00000111707|ENST00000543473|SUDS3 ENSG00000111707|ENST00000543473|SUDS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.771240234375 2 542.7708 1083.52705 NaN NaN NaN NaN NaN NaN NaN 40.604 1 40.604 40.104 41.104 0 0 0 0 0.025508 1 21838 21838 71.708 37.306 1 41410 2819 27533 28230 48620 48620 493 -0.011376268739468287 MYQDKLASL 9 Oxidation (M) _M(Oxidation (M))YQDKLASL_ M(1)YQDKLASL M(91)YQDKLASL 0 0 1 ENSG00000111707|ENST00000543473|SUDS3 ENSG00000111707|ENST00000543473|SUDS3 ENSG00000111707|ENST00000543473|SUDS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7709350585938 2 542.7708 1083.52705 NaN NaN NaN NaN NaN NaN NaN 40.784 1 40.784 40.284 41.284 0 0 0 0 0.010776 1 21947 21947 91.085 39.67 1 41411 2819 27533 28230 48621 48621 493 -0.011376268739468287 MYQEATFKL 9 Oxidation (M) _M(Oxidation (M))YQEATFKL_ M(1)YQEATFKL M(83)YQEATFKL 0 0 1 ENSG00000170542|ENST00000380698|SERPINB9 ENSG00000170542|ENST00000380698|SERPINB9 ENSG00000170542|ENST00000380698|SERPINB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7784423828125 2 573.778625 1145.5427 0.77671 0.00044566 0.0069135 3.9668E-06 0.78362 0.00044962 573.778518939283 49.646 0.39526 49.646 49.416 49.812 0 34 17 2 0 0 0 0.0093064 2 27377 27262;27377 83.429 45.455 1 4630800 41412 8001 27534 28231 48622;48623 48623 1361 -0.024253403568764043 MYQEATFKL 9 Oxidation (M) _M(Oxidation (M))YQEATFKL_ M(1)YQEATFKL M(58)YQEATFKL 0 0 1 ENSG00000170542|ENST00000380698|SERPINB9 ENSG00000170542|ENST00000380698|SERPINB9 ENSG00000170542|ENST00000380698|SERPINB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7794799804688 2 573.778625 1145.5427 0.98953 0.00056777 -0.095038 -5.4531E-05 0.8945 0.00051324 573.7790325500245 50.122 0.24236 49.729 49.588 49.83 -0.3923 24 11 3 0 0 0 0.025842 1 27002 27002 57.722 27.085 1 2441800 41413 8001 27534 28231 48624 48624 1361 -0.024253403568764043 MYQEHINEI 9 Oxidation (M) _M(Oxidation (M))YQEHINEI_ M(1)YQEHINEI M(87)YQEHINEI 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7681884765625 2 596.768788 1191.52302 -0.60371 -0.00036028 0.56542 0.00033742 -0.038297 -2.2855E-05 596.7693057202112 33.844 0.35771 33.844 33.667 34.025 0 45 17 4 0 0 0 0.0088668 1 17747 17747 87.258 47.309 1 11834000 41414 8655 27535 28232 48625 48625 1465 -0.06507716367650573 MYQEHINEI 9 Oxidation (M) _M(Oxidation (M))YQEHINEI_ M(1)YQEHINEI M(74)YQEHINEI 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.76708984375 2 596.768788 1191.52302 NaN NaN NaN NaN NaN NaN NaN 33.453 1 33.453 32.953 33.953 0 0 0 0 0.023462 1 17549 17549 74.2 33.751 1 41415 8655 27535 28232 48626 48626 1465 -0.06507716367650573 MYQEHINEI 9 Oxidation (M) _M(Oxidation (M))YQEHINEI_ M(1)YQEHINEI M(65)YQEHINEI 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7684936523438 2 596.768788 1191.52302 0.30095 0.0001796 -1.343 -0.00080148 -1.0421 -0.00062188 596.768431819974 38.231 0.58969 33.862 33.548 34.138 -4.3689 48 35 2 0 0 0 0.018061 1 22608 22608 65.474 25.025 1 12689000 41416 8655 27535 28232 48627 48627 1465 -0.06507716367650573 MYQEHINEI 9 Oxidation (M) _M(Oxidation (M))YQEHINEI_ M(1)YQEHINEI M(110)YQEHINEI 0 0 1 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20221201_MKP_PDAC_01 4 596.7687377929688 2 596.768788 1191.52302 NaN NaN NaN NaN NaN NaN NaN 37.984 1 33.615 33.115 34.115 -4.3689 0 0 0 0.011221 1 22355 22355 107.1 57.431 1 41417 8655 27535 28232 48628 48628 1465 -0.06507716367650573 MYQIKYEEL 9 Oxidation (M) _M(Oxidation (M))YQIKYEEL_ M(1)YQIKYEEL M(69)YQIKYEEL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7965087890625 2 616.797014 1231.57948 0.18312 0.00011295 -0.79659 -0.00049134 -0.61347 -0.00037839 617.29831577796 48.227 0.24131 48.227 48.132 48.373 0 22 11 3 0 0 0 0.014417 1 26448 26448 69.105 38.468 1 5901400 + 41418 165;150 27536 28233 48629 48629 13 -0.02705088530979083 MYQIKYEEL 9 Oxidation (M) _M(Oxidation (M))YQIKYEEL_ M(1)YQIKYEEL M(54)YQIKYEEL 0 0 1 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7974243164062 2 616.797014 1231.57948 -0.24962 -0.00015396 1.3418 0.00082761 1.0922 0.00067365 616.797857111647 48.524 0.2443 48.524 48.413 48.658 0 28 11 3 0 0 0 0.032796 1 26620 26620 53.833 34.576 1 7035900 + 41419 165;150 27536 28233 48630 48630 13 -0.02705088530979083 MYQTKAVII 9 Oxidation (M) _M(Oxidation (M))YQTKAVII_ M(1)YQTKAVII M(46)YQTKAVII 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.8007202148438 2 541.79936 1081.58417 0.30389 0.00016465 0.2563 0.00013886 0.56018 0.00030351 541.7997918974604 43.235 0.2198 43.235 43.121 43.341 0 24 10 3 0 0 0 0.047788 1 23460 23460 45.7 19.358 1 7548900 41420 4760 27537 28234 48631 48631 863 0.046638404024406555 MYQTKAVII 9 Oxidation (M) _M(Oxidation (M))YQTKAVII_ M(1)YQTKAVII M(53)YQTKAVII 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.79931640625 2 541.79936 1081.58417 0.043209 2.341E-05 -0.97226 -0.00052677 -0.92906 -0.00050336 541.7988993951568 43.46 0.22233 43.46 43.323 43.545 0 24 10 3 0 0 0 0.033587 1 23631 23631 53.404 24.917 1 9421500 41421 4760 27537 28234 48632 48632 863 0.046638404024406555 MYQTKAVII 9 Oxidation (M) _M(Oxidation (M))YQTKAVII_ M(1)YQTKAVII M(66)YQTKAVII 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7996826171875 2 541.79936 1081.58417 0.0083694 4.5345E-06 -0.074216 -4.021E-05 -0.065846 -3.5676E-05 541.7990159627459 43.417 0.16046 43.107 43.025 43.185 -0.31039 11 7 2 0 0 0 0.017075 1 23121 23121 66.457 36.232 1 7775800 41422 4760 27537 28234 48633 48633 863 0.046638404024406555 MYRALVWKVL 10 Unmodified _MYRALVWKVL_ 0 0 0 ENST00000607532.5_1_6:13307806-13327130:-|nuORF;ENSG00000145979|ENST00000379300|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7 ENST00000607532.5_1_6:13307806-13327130:-|nuORF ENST00000607532.5_1_6:13307806-13327130:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 426.6895446777344 3 426.917888 1277.73183 NaN NaN NaN NaN NaN NaN NaN 55.039 1 49.118 48.618 49.618 -5.9211 0 0 0 0.93038 1 34984 34984 6.6304 0.39602 1 41423 5742 27538 28235 48634 48634 0.10407776727083728 MYRMNCCCTEL 11 Unmodified _MYRMNCCCTEL_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1;nc|ENSG00000095627|Q9BXT4-4|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.1741333007812 3 456.174206 1365.50079 0.82157 0.00037478 -0.94966 -0.00043321 -0.12809 -5.843E-05 456.1737192145153 28.615 0.23221 25.467 25.323 25.555 -3.1482 20 11 2 0 0 0 0.71503 1 15984 15984 2.8433 0.75728 1 7716200 41424 1658 27539 28236 48635 48635 -0.16734046695228244 MYSALRDNLF 10 Unmodified _MYSALRDNLF_ 0 0 0 REV__CON__Q9D646 REV__CON__Q9D646 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3041381835938 2 615.302798 1228.59104 3.8055 0.0023415 -1.8678 -0.0011493 1.9376 0.0011922 615.3014340262756 98.078 0.35519 98.06 97.927 98.283 -0.018188 27 12 3 0 0 0 0.48505 1 54498 54498 17.113 3.2068 1 1418200 + + 41425 16888 27540 28237 48636 48636 -0.014108467169990035 MYSCTMYTLF 10 Unmodified _MYSCTMYTLF_ 0 0 0 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.2622680664062 2 630.260896 1258.50724 0.056796 3.5796E-05 2.5577 0.001612 2.6145 0.0016478 630.2627536878819 59.281 0.28079 58.79 58.665 58.946 -0.49079 29 12 4 0 0 0 0.66569 1 32263 32263 6.7232 0.51738 1 2722200 + 41426 20904 27541 28238 48637 48637 -0.11167462200569389 MYSDVWKQL 9 Oxidation (M) _M(Oxidation (M))YSDVWKQL_ M(1)YSDVWKQL M(120)YSDVWKQL 0 0 1 ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1 ENST00000393448.6_1_5:179018652-179028988:+|nuORF ENST00000393448.6_1_5:179018652-179028988:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2847900390625 2 593.284074 1184.5536 1.3717 0.00081383 -2.8274 -0.0016775 -1.4557 -0.00086364 593.2819136231413 62.445 0.58051 56.27 56.055 56.636 -6.1757 44 30 2 0 0 0 0.0044708 1 40266 40266 118.89 80.921 1 21876000 41427 8623 27542 28239 48638 48638 1457 -0.031299379826123186 MYSFVNDKF 9 Unmodified _MYSFVNDKF_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A;ENSG00000149289|ENST00000278590|ZC3H12C;nc|ENSG00000149289|Q9C0D7-2|ZC3H12C;ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ENSG00000163874|ENST00000373087|ZC3H12A;ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 575.7654418945312 2 575.765517 1149.51648 NaN NaN NaN NaN NaN NaN NaN 64.257 1 58.081 57.581 58.581 -6.1757 0 0 0 0.024473 1 41613 41613 72.968 33.011 1 41428 2014;7089 27543 28240 48639 48639 -0.0522960952835092 MYSGALLFF 9 Oxidation (M) _M(Oxidation (M))YSGALLFF_ M(1)YSGALLFF M(44)YSGALLFF 0 0 1 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7620239257812 2 532.759704 1063.50485 4.2931 0.0022872 -0.48508 -0.00025843 3.8081 0.0020288 532.7593089258278 98.988 0.27432 98.96 98.833 99.108 -0.028282 19 9 3 0 0 0 0.052168 1 54998 54998 44.407 17.523 1 5545300 41429 10665 27544 28241 48640 48640 1708 -0.024358065516935312 MYSGALLFF 9 Oxidation (M) _M(Oxidation (M))YSGALLFF_ 0 0 1 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.759704 1063.50485 0.28604 0.00015239 -1.4901 -0.00079387 -1.2041 -0.00064148 532.7585901715219 99.178 0.16451 98.985 98.894 99.059 -0.19321 0.012276 -0.00067864 NaN 44.407 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 374630 41430 10665 27544 28241 1708 -0.024358065516935312 MYTFCTNYGGQ 11 Unmodified _MYTFCTNYGGQ_ 0 0 0 nc|ENSG00000147679|Q9BRU9-2|UTP23 nc|ENSG00000147679|Q9BRU9-2|UTP23 nc|ENSG00000147679|Q9BRU9-2|UTP23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.7548217773438 2 642.754824 1283.49509 0.034944 2.2461E-05 0.19517 0.00012544 0.23011 0.0001479 642.7550284560067 85.445 0.52083 79.269 79.075 79.596 -6.1757 85 31 4 0 0 0 0.65846 1 56329 56329 8.1555 1.9497 1 49380000 41431 16258 27545 28242 48641 48641 -0.13531362619391984 MYTKLFVGF 9 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ M(1)YTKLFVGF M(56)YTKLFVGF 0 0 1 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2901000976562 2 561.288628 1120.5627 1.3579 0.00076216 1.3977 0.00078451 2.7556 0.0015467 561.2894707432097 70.64 0.35207 70.676 70.503 70.855 0.035515 55 15 5 0 0 0 0.028475 1 38835 38835 56.177 40.33 1 48398000 41432 4845 27546 28243 48642 48642 878 0.007244553737336901 MYTKLFVGF 9 Oxidation (M) _M(Oxidation (M))YTKLFVGF_ M(1)YTKLFVGF M(50)YTKLFVGF 0 0 1 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2891845703125 2 561.288628 1120.5627 1.5765 0.00088488 -0.18684 -0.00010487 1.3897 0.00078001 561.2885438136632 70.848 0.59839 70.883 70.763 71.361 0.035515 67 26 3 0 0 0 0.039985 2 39050 38941;39050 49.933 25.626 1 58974000 41433 4845 27546 28243 48643;48644 48644 878 0.007244553737336901 MYTKLFVGF 9 Unmodified _MYTKLFVGF_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2922973632812 2 553.291171 1104.56779 0.20396 0.00011285 1.6368 0.00090562 1.8407 0.0010185 553.2924859122247 77.278 0.43013 77.328 77.128 77.558 0.05011 37 17 3 0 0 0 0.023481 1 42617 42617 60.074 34.675 1 6795000 41434 4845 27546 28244 48645 48645 0.019687592363652584 MYTKLFVGF 9 Unmodified _MYTKLFVGF_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;ENST00000461187.5_1_2:130911777-130913705:-|nuORF;ENST00000482171.5_1_2:130912606-130913705:-|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2911987304688 2 553.291171 1104.56779 1.1771 0.00065126 -1.8425 -0.0010194 -0.66543 -0.00036818 553.2900321402175 96.183 0.36988 90.007 89.833 90.203 -6.1757 59 22 3 0 0 0 0.010611 1 63772 63772 78.728 42.601 1 201440000 41435 4845 27546 28244 48646 48646 0.019687592363652584 MYTLGITNF 9 Oxidation (M) _M(Oxidation (M))YTLGITNF_ M(1)YTLGITNF M(67)YTLGITNF 0 0 1 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2593994140625 2 538.260068 1074.50558 0.61846 0.00033289 -0.28367 -0.00015269 0.33479 0.0001802 538.2599577572488 75.313 0.58253 74.836 74.63 75.212 -0.47714 81 30 3 0 0 0 0.016184 2 41179 41179;41384 67.344 40.46 1 14652000 41436 2768 27547 28245 48647;48648 48647 481 -0.02869011902657803 MYTLGITNF 9 Oxidation (M) _M(Oxidation (M))YTLGITNF_ M(1)YTLGITNF M(60)YTLGITNF 0 0 1 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2603149414062 2 538.260068 1074.50558 0.25342 0.00013641 -0.32838 -0.00017675 -0.074954 -4.0345E-05 538.2596646551079 74.909 0.74992 74.955 74.637 75.387 0.045967 72 35 3 0 0 0 0.023164 3 41273 41171;41273;41403 60.39 35.716 1 9073800 41437 2768 27547 28245 48649;48650;48651 48650 481 -0.02869011902657803 MYTLGITNF 9 Oxidation (M) _M(Oxidation (M))YTLGITNF_ M(1)YTLGITNF M(67)YTLGITNF 0 0 1 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.255859375 2 538.260068 1074.50558 0.53369 0.00028726 -0.23115 -0.00012442 0.30254 0.00016284 538.2597110336206 82.797 0.61237 76.621 76.27 76.883 -6.1757 93 34 3 0 0 0 0.016184 3 54208 54208;54336;54474 67.344 31.3 1 57584000 41438 2768 27547 28245 48652;48653;48654 48652 481 -0.02869011902657803 MYTLGITNF 9 Unmodified _MYTLGITNF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.26318359375 2 530.26261 1058.51067 0.49112 0.00026042 -1.357 -0.00071956 -0.86587 -0.00045914 530.2618713166005 82.758 0.33957 82.26 82.128 82.467 -0.49751 20 14 2 0 0 0 0.28047 1 45304 45304 18.135 9.5417 1 883370 41439 2768 27547 28246 48655 48655 -0.016247080400262348 MYTLGITNF 9 Unmodified _MYTLGITNF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2632446289062 2 530.26261 1058.51067 1.0071 0.000534 -1.063 -0.00056369 -0.055983 -2.9686E-05 530.2620615967426 90.455 0.70889 84.279 83.951 84.659 -6.1757 99 41 3 0 0 0 0.016184 3 59604 59604;59743;59875 67.344 31.3 1 36549000 41440 2768 27547 28246 48656;48657;48658 48656 -0.016247080400262348 MYTLGITNF 9 Unmodified _MYTLGITNF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF;ENST00000397300.2_1_11:93921617-93921950:-|nuORF ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.26261 1058.51067 1.5233 0.00080774 -0.54735 -0.00029024 0.97594 0.0005175 530.2626922274374 82.208 0.2218 82.27 82.125 82.347 0.062004 0.0049638 0.00042089 NaN 18.135 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2005500 41441 2768 27547 28246 -0.016247080400262348 MYTRNTVLL 9 Unmodified _MYTRNTVLL_ 0 0 0 ENST00000467790.5_1_1:79116146-79116191:+|nuORF ENST00000467790.5_1_1:79116146-79116191:+|nuORF ENST00000467790.5_1_1:79116146-79116191:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8042602539062 2 555.802434 1109.59032 1.3329 0.0007408 1.1328 0.00062962 2.4657 0.0013704 555.8031456617399 54.303 0.34444 48.438 48.211 48.556 -5.8653 33 20 2 0 0 0 0.085319 1 34350 34350 36.506 7.4246 1 14197000 41442 13788 27548 28247 48659 48659 0.03990358633973301 MYTVFEHTF 9 Oxidation (M) _M(Oxidation (M))YTVFEHTF_ M(1)YTVFEHTF M(71)YTVFEHTF 0 0 1 nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 nc|ENSG00000106105|P41250-2|GARS1 nc|ENSG00000106105|P41250-2|GARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7616577148438 2 595.762975 1189.5114 0.43403 0.00025858 -2.5574 -0.0015236 -2.1234 -0.001265 595.762059805282 57.905 0.266 57.415 57.267 57.533 -0.48974 27 12 3 0 0 0 0.013472 1 31450 31450 70.716 48.969 1 2160700 41443 2401 27549 28248 48660 48660 414 -0.07577913390991853 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(97)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7582397460938 2 577.758027 1153.5015 0.061635 3.561E-05 -0.52228 -0.00030175 -0.46065 -0.00026614 577.7578492468876 38.954 0.26466 38.667 38.498 38.763 -0.28687 31 11 4 0 0 0 0.0083087 1 20508 20508 97.075 60.948 1 11431000 41444 5216 27550 28249 48661 48661 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(60)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7592163085938 2 577.758027 1153.5015 0.05357 3.0951E-05 -0.20923 -0.00012088 -0.15566 -8.9932E-05 577.7579247337667 39.136 0.21834 38.849 38.763 38.981 -0.28687 22 9 3 0 0 0 0.023164 1 20616 20616 60.39 31.308 1 14259000 41445 5216 27550 28249 48662 48662 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(50)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5077209472656 3 385.507777 1153.5015 -0.0085843 -3.3093E-06 -0.29377 -0.00011325 -0.30235 -0.00011656 385.50768761912786 39.156 0.42255 38.869 38.52 38.943 -0.28687 34 18 4 0 0 0 0.039985 1 20628 20628 49.933 37.692 1 9081900 41446 5216 27550 28249 48663 48663 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(78)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.756103515625 2 577.758027 1153.5015 0.40391 0.00023336 -1.23 -0.00071064 -0.82609 -0.00047728 577.7574906859385 38.539 0.25095 38.556 38.413 38.664 0.01704 27 11 3 0 0 0 0.010877 1 20477 20477 77.984 55.248 1 15875000 41447 5216 27550 28249 48664 48664 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(71)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7572631835938 2 577.758027 1153.5015 0.44942 0.00025966 -0.38743 -0.00022384 0.061988 3.5814E-05 577.7578320879655 38.751 0.2012 38.763 38.658 38.86 0.011452 25 9 3 0 0 0 0.013472 1 20584 20584 70.716 47.979 1 8391400 41448 5216 27550 28249 48665 48665 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(120)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7591552734375 2 577.758027 1153.5015 1.023 0.00059106 0.17392 0.00010049 1.1969 0.00069154 577.7582293483083 42.808 0.38942 38.123 37.934 38.323 -4.6846 43 24 2 0 0 0 0.0036753 2 25837 25837;25976 123.1 70.828 1 14270000 41449 5216 27550 28249 48666;48667 48666 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ M(1)YVFASHHF M(42)YVFASHHF 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5082092285156 3 385.507777 1153.5015 1.3617 0.00052496 0.11717 4.517E-05 1.4789 0.00057013 385.50767040320403 42.816 0.48341 38.131 37.885 38.369 -4.6846 82 30 3 0 0 0 0.06294 1 25949 25949 41.84 33.094 1 32439000 41450 5216 27550 28249 48668 48668 958 -0.06911056605713384 MYVFASHHF 9 Oxidation (M) _M(Oxidation (M))YVFASHHF_ 0 0 1 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.507777 1153.5015 0.11589 4.4676E-05 -0.88212 -0.00034007 -0.76624 -0.00029539 385.5074745443521 38.741 0.38528 38.753 38.455 38.84 0.011452 -0.058329 -0.00036032 NaN 49.933 38 18 4 NaN NaN NaN NaN 0 NaN NaN 0 7352300 41451 5216 27550 28249 958 -0.06911056605713384 MYVFASHHF 9 Unmodified _MYVFASHHF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.177001953125 3 380.176138 1137.50659 1.5635 0.00059442 3.0463 0.0011581 4.6098 0.0017525 380.1784346277998 50.372 0.57964 44.833 44.633 45.213 -5.5391 72 36 3 0 0 0 0.052168 1 31518 31518 39.95 27.709 1 62060000 41452 5216 27550 28250 48669 48669 -0.056667527430818154 MYYEYFQASLW 11 Unmodified _MYYEYFQASLW_ 0 0 0 ENST00000327827.11_1_16:9212523-9212682:+|nuORF ENST00000327827.11_1_16:9212523-9212682:+|nuORF ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 750.828125 2 750.828846 1499.64314 -0.42531 -0.00031933 -0.6552 -0.00049194 -1.0805 -0.00081127 751.3295241143372 51.469 0.35817 51.055 50.836 51.194 -0.41351 49 18 4 0 0 0 0.69316 1 27797 27797 4.897 1.9018 1 21140000 41453 11829 27551 28251 48670 48670 -0.08669728093877893 NAAAAAAMY 9 Oxidation (M) _NAAAAAAM(Oxidation (M))Y_ NAAAAAAM(1)Y NAAAAAAM(42)Y 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 869.3831787109375 1 869.382179 868.374903 -0.30918 -0.0002688 -0.10059 -8.7448E-05 -0.40977 -0.00035624 869.3818525571415 24.521 0.38475 24.521 24.312 24.697 0 29 21 2 0 0 0 0.06187 1 12479 12479 42.095 11.87 1 820570 41454 7051 27552 28252 48671 48671 1211 -0.06454982830837253 NAAAAAAMY 9 Oxidation (M) _NAAAAAAM(Oxidation (M))Y_ NAAAAAAM(1)Y NAAAAAAM(42)Y 0 0 1 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.1950988769531 2 435.194728 868.374903 -0.25642 -0.00011159 0.025066 1.0908E-05 -0.23135 -0.00010068 435.1947427345009 24.573 0.46756 24.573 24.293 24.76 0 49 26 2 0 0 0 0.06187 1 12548 12548 42.095 22.656 1 1482700 41455 7051 27552 28252 48672 48672 1211 -0.06454982830837253 NAAAAAAMY 9 Unmodified _NAAAAAAMY_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.3885498046875 1 853.387264 852.379988 0.70068 0.00059795 0.9155 0.00078128 1.6162 0.0013792 853.388104428468 39.471 0.31809 35.02 34.876 35.194 -4.4509 30 18 2 0 0 0 0.0090851 2 23406 23406;23541 85.357 28.815 1 8020400 41456 7051 27552 28253 48673;48674 48673 -0.052106789682284216 NAAAIFDLF 9 Unmodified _NAAAIFDLF_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 981.5045776367188 1 981.504009 980.496732 0.83987 0.00082434 0.72351 0.00071012 1.5634 0.0015345 981.504096606722 101.4 0.074272 95.229 95.178 95.252 -6.1757 6 3 2 0 0 0 0.012148 1 68049 68049 74.423 0.026461 1 7546300 41457 9403 27553 28254 48675 48675 0.005703825231876181 NAAAIFDLF 9 Unmodified _NAAAIFDLF_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2569580078125 2 491.255643 980.496732 0.87019 0.00042748 2.6314 0.0012927 3.5016 0.0017202 491.2572138602634 101.42 0.096107 95.242 95.178 95.274 -6.1757 7 4 2 0 0 0 0.14602 1 68055 68055 28.487 9.0478 1 11754000 41458 9403 27553 28254 48676 48676 0.005703825231876181 NAAAIYDLL 9 Unmodified _NAAAIYDLL_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.5152587890625 1 963.514573 962.507297 0.14592 0.0001406 0.69576 0.00067038 0.84168 0.00081097 963.5156282198888 84.71 0.30168 84.71 84.567 84.868 0 25 14 2 0 0 0 0.2143 1 46932 46932 21.747 2.3076 1 865490 41459 985 27554 28255 48677 48677 0.02454365177618456 NAAAIYDLL 9 Unmodified _NAAAIYDLL_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000484061.5_1_2:47221411-47251446:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2608032226562 2 482.260925 962.507297 NaN NaN NaN NaN NaN NaN NaN 84.762 1 84.762 84.262 85.262 0 0 0 0 0.76439 1 46985 46985 7.2892 2.0586 1 41460 985 27554 28255 48678 48678 0.02454365177618456 NAAEITDKL 9 Unmodified _NAAEITDKL_ 0 0 0 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3 ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MSMS AL20221201_MKP_PDAC_01 4 487.7617492675781 2 487.761289 973.508025 NaN NaN NaN NaN NaN NaN NaN 42.528 1 37.844 37.344 38.344 -4.6846 0 0 0 0.032269 1 25704 25704 65.474 28.967 1 41461 4585;13440 27555 28256 48679 48679 0.02021159826665553 NAAERRGPL 9 Unmodified _NAAERRGPL_ 0 0 0 ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2731018066406 2 492.27269 982.530826 0.28894 0.00014224 -0.12449 -6.1283E-05 0.16445 8.0955E-05 492.27265371259887 17 0.16477 14.414 14.332 14.496 -2.5866 51 29 2 0 0 0 0.54444 1 8820 8820 4.756 4.756 1 4856000 41462 10259 27556 28257 48680 48680 0.038862237347984774 NAAESVSTF 9 Unmodified _NAAESVSTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4268188476562 1 925.426152 924.418876 0.27096 0.00025076 1.066 0.00098652 1.337 0.0012373 925.4265366963228 37.961 0.22335 37.961 37.846 38.069 0 21 10 3 0 0 0 0.08691 1 20215 20215 36.127 2.0246 1 1033000 41463 4951 27557 28258 48681 48681 -0.046356751328403334 NAAESVSTF 9 Unmodified _NAAESVSTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2169494628906 2 463.216714 924.418876 0.60667 0.00028102 0.33588 0.00015558 0.94255 0.00043661 463.21682358394696 37.959 0.28242 37.959 37.806 38.089 0 26 13 3 0 0 0 0.039985 1 20218 20218 49.933 23.049 1 5661100 41464 4951 27557 28258 48682 48682 -0.046356751328403334 NAAESVSTF 9 Unmodified _NAAESVSTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.216064453125 2 463.216714 924.418876 0.59536 0.00027578 -0.50411 -0.00023351 0.091253 4.227E-05 463.2164450217486 44.37 0.34847 39.518 39.328 39.677 -4.852 38 25 2 0 0 0 0.047196 2 27021 27021;27167 46.021 17.534 1 12182000 41465 4951 27557 28258 48683;48684 48683 -0.046356751328403334 NAAFPDTSM 9 Oxidation (M) _NAAFPDTSM(Oxidation (M))_ NAAFPDTSM(1) NAAFPDTSM(57) 0 0 1 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2015991210938 2 485.20275 968.390947 0.2186 0.00010606 -0.44721 -0.00021699 -0.22861 -0.00011092 485.20248383009715 31.212 0.46832 31.212 30.995 31.463 0 40 22 2 0 0 0 0.026094 1 16285 16285 57.471 34.323 1 2634300 41466 944;3759 27558 28259 48685 48685 149 -0.09451321384585754 NAAFPDTSM 9 Oxidation (M) _NAAFPDTSM(Oxidation (M))_ NAAFPDTSM(1) NAAFPDTSM(48) 0 0 1 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2029418945312 2 485.20275 968.390947 0.91963 0.00044621 -0.13357 -6.4809E-05 0.78606 0.0003814 485.20241720141576 36.797 0.3479 32.514 32.371 32.719 -4.2835 31 20 2 0 0 0 0.042911 1 21609 21609 48.346 35.814 1 6394600 41467 944;3759 27558 28259 48686 48686 149 -0.09451321384585754 NAAFPFLAY 9 Unmodified _NAAFPFLAY_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC;ENST00000463356.5_1_3:195785139-195787086:-|nuORF ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2592468261719 2 507.258185 1012.50182 2.1253 0.0010781 -0.14873 -7.5445E-05 1.9765 0.0010026 507.25808399752395 94.247 0.51115 94.262 94.029 94.54 0.014252 29 18 2 0 0 0 0.06187 1 52346 52346 42.095 25.152 1 2218200 41468 1077 27559 28260 48687 48687 -0.003933136141995419 NAAFPFLAY 9 Unmodified _NAAFPFLAY_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC;ENST00000463356.5_1_3:195785139-195787086:-|nuORF ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2601318359375 2 507.258185 1012.50182 1.2228 0.00062027 0.1308 6.6348E-05 1.3536 0.00068662 507.2583464299922 100.16 0.18803 93.985 93.884 94.072 -6.1757 21 11 3 0 0 0 0.06187 1 66876 66876 42.095 21.641 1 35539000 41469 1077 27559 28260 48688 48688 -0.003933136141995419 NAAFQLKDY 9 Unmodified _NAAFQLKDY_ 0 0 0 REV__ENSG00000264006|ENST00000648824|AKR1C8 REV__ENSG00000264006|ENST00000648824|AKR1C8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2711791992188 2 535.269281 1068.52401 NaN NaN NaN NaN NaN NaN NaN 49.25 1 48.879 48.379 49.379 -0.37172 0 0 0 0.6557 1 26469 26469 10.824 0 1 + 41470 24599 27560 28261 48689 48689 -0.007511339364327796 NAAGGGGG 8 Unmodified _NAAGGGGG_ 0 0 0 ENSG00000050767|ENST00000390654|COL23A1 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7407836914062 1 560.242315 559.235038 0.58366 0.00032699 3.1581 0.0017693 3.7418 0.0020963 560.2429500971948 50.017 0.20792 50.017 49.926 50.134 0 13 9 2 0 0 0 8.7369 1 27564 27564 2.5775 0 1 1187400 + 41471 23399 27561 28262 48690 48690 -0.06220979053045994 NAAHIYQVF 9 Unmodified _NAAHIYQVF_ 0 0 0 nc|ENSG00000003436|P10646-2|TFPI nc|ENSG00000003436|P10646-2|TFPI nc|ENSG00000003436|P10646-2|TFPI MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.26416015625 2 531.771991 1061.52943 0.5086 0.00027046 -2.5381 -0.0013497 -2.0295 -0.0010792 532.2705317564966 52.198 0.33467 51.764 51.59 51.925 -0.43367 34 16 3 0 0 0 0.1474 1 28165 28165 21.747 12.399 1 3264000 41472 16008 27562 28263 48691 48691 0.0011258964602802735 NAAKVFNLY 9 Unmodified _NAAKVFNLY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2824096679688 2 520.282192 1038.54983 0.24874 0.00012941 -0.080454 -4.1859E-05 0.16828 8.7555E-05 520.282514241359 52.996 0.42402 52.545 52.338 52.762 -0.45173 87 21 5 0 0 0 0.0010099 2 28579 28579;28690 139.54 88.689 1 64781000 41473 1625 27563 28264 48692;48693 48692 0.032097603058673485 NAAKVFNLY 9 Unmodified _NAAKVFNLY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2798461914062 2 520.282192 1038.54983 0.70218 0.00036533 -0.33771 -0.0001757 0.36447 0.00018963 520.2820315057562 52.595 0.53676 52.536 52.368 52.905 -0.058918 99 26 5 0 0 0 0.0082281 2 28444 28444;28545 97.075 62.186 1 170300000 41474 1625 27563 28264 48694;48695 48694 0.032097603058673485 NAAKVFNLY 9 Unmodified _NAAKVFNLY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2830200195312 2 520.282192 1038.54983 1.1617 0.00060441 -0.67826 -0.00035288 0.48344 0.00025152 520.2822473588816 58.33 0.92685 52.256 51.924 52.851 -6.0745 180 50 5 0 0 0 0.00032477 2 37443 37317;37443 147.83 90.36 1 491740000 41475 1625 27563 28264 48696;48697 48697 0.032097603058673485 NAAKVFNLY 9 Unmodified _NAAKVFNLY_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.282192 1038.54983 0.29716 0.00015461 3.144 0.0016358 3.4411 0.0017904 520.2829592873753 52.49 0.17111 52.49 52.402 52.573 0 0.033709 0.0036356 NaN 147.83 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1009800 41476 1625 27563 28264 0.032097603058673485 NAANIFERL 9 Unmodified _NAANIFERL_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7606811523438 2 524.282723 1046.55089 0.60309 0.00031619 1.7819 0.00093422 2.385 0.0012504 524.2841283237256 61.229 0.27531 61.229 61.045 61.321 0 19 11 2 0 0 0 0.18094 1 34106 34106 20.415 1.1575 1 494440 41477 944;3759 27564 28265 48698 48698 0.02947974674748366 NAANIFERL 9 Unmodified _NAANIFERL_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2830810546875 2 524.282723 1046.55089 -0.02651 -1.3899E-05 0.75453 0.00039559 0.72802 0.00038169 524.2831661063877 61.618 0.29819 61.13 60.944 61.243 -0.48764 40 13 4 0 0 0 0.015688 1 33553 33553 67.838 25.999 1 8683100 41478 944;3759 27564 28265 48699 48699 0.02947974674748366 NAAPCAVSY 9 Carbamidomethyl (C) _NAAPC(Carbamidomethyl (C))AVSY_ NAAPC(1)AVSY NAAPC(48)AVSY 0 1 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7127990722656 2 476.713285 951.412016 -0.67387 -0.00032124 0.28229 0.00013457 -0.39158 -0.00018667 476.7133143257755 32.909 0.25726 32.909 32.772 33.029 0 21 12 3 0 0 0 0.042911 1 17230 17230 48.346 20.173 1 3815600 41479 7966 27565 28266 48700 48700 779 -0.06563311285071904 NAAPCAVSY 9 Carbamidomethyl (C) _NAAPC(Carbamidomethyl (C))AVSY_ NAAPC(1)AVSY NAAPC(74)AVSY 0 1 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7135314941406 2 476.713285 951.412016 0.56989 0.00027167 0.22871 0.00010903 0.7986 0.0003807 476.7134212561681 38.449 0.42064 34.08 33.836 34.257 -4.3689 69 26 3 0 0 0 0.012148 2 22576 22576;22710 74.423 46.25 1 84555000 41480 7966 27565 28266 48701;48702 48701 779 -0.06563311285071904 NAAPCAVSY 9 Carbamidomethyl (C) _NAAPC(Carbamidomethyl (C))AVSY_ NAAPC(1)AVSY NAAPC(110)AVSY 0 1 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 952.4203491210938 1 952.419293 951.412016 0.28966 0.00027588 -0.11095 -0.00010567 0.17871 0.00017021 952.4193763582832 38.429 0.31554 34.06 33.9 34.215 -4.3689 48 19 3 0 0 0 0.0071894 2 22583 22583;22709 111.29 75.243 1 17721000 41481 7966 27565 28266 48703;48704 48703 779 -0.06563311285071904 NAAPPPVTY 9 Unmodified _NAAPPPVTY_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2405700683594 2 465.239993 928.465432 0.79974 0.00037207 -1.3782 -0.00064121 -0.57849 -0.00026914 465.2393695206548 38.353 0.32081 38.353 38.339 38.66 0 33 20 2 0 0 0 0.010818 1 20480 20480 78.149 44.047 1 5324800 41482 1504 27566 28267 48705 48705 -0.0016619051091311121 NAAPPPVTY 9 Unmodified _NAAPPPVTY_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2400512695312 2 465.239993 928.465432 0.57123 0.00026576 0.32702 0.00015214 0.89825 0.0004179 465.24039687892395 44.607 0.48029 39.755 39.541 40.021 -4.852 60 37 2 0 0 0 0.0044708 2 27215 27215;27338 118.89 78.937 1 24281000 41483 1504 27566 28267 48706;48707 48706 -0.0016619051091311121 NAAPTRTAL 9 Unmodified _NAAPTRTAL_ 0 0 0 ENSG00000167656|ENST00000301263|LY6D ENSG00000167656|ENST00000301263|LY6D ENSG00000167656|ENST00000301263|LY6D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7565002441406 2 457.756341 913.498129 0.10671 4.8846E-05 0.35397 0.00016203 0.46068 0.00021088 457.75651739858984 22.65 0.30959 22.65 22.465 22.775 0 38 14 3 0 0 0 0.014417 1 11489 11489 69.105 1.7611 1 7682300 41484 7649 27567 28268 48708 48708 0.037920166119306487 NAAQIFAIY 9 Unmodified _NAAQIFAIY_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7706298828125 2 505.768917 1009.52328 -0.058678 -2.9677E-05 0.83071 0.00042015 0.77203 0.00039047 505.7693531528093 78.982 0.58234 78.496 78.265 78.848 -0.48596 33 24 2 0 0 0 0.026094 1 43244 43244 57.471 34.323 1 1830700 41485 10109 27568 28269 48709 48709 0.018900714145161146 NAAQIFAIY 9 Unmodified _NAAQIFAIY_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2709655761719 2 505.768917 1009.52328 1.1184 0.00056564 -2.366 -0.0011967 -1.2476 -0.00063101 505.76790274099574 86.211 0.50566 80.035 79.76 80.266 -6.1757 36 25 2 0 0 0 0.026094 1 56791 56791 57.471 31.13 1 9120700 41486 10109 27568 28269 48710 48710 0.018900714145161146 NAAQSYVTA 9 Unmodified _NAAQSYVTA_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.4419555664062 1 924.442137 923.43486 -0.49785 -0.00046024 0.3604 0.00033317 -0.13745 -0.00012707 924.4426199834253 27.504 0.28688 27.504 27.392 27.679 0 24 13 2 0 0 0 0.5029 1 14263 14263 7.2892 0 1 3809800 + 41487 29698 27569 28270 48711 48711 -0.02991968895946684 NAAQTSVAY 9 Unmodified _NAAQTSVAY_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.441162109375 1 924.442137 923.43486 -0.49785 -0.00046024 0.3604 0.00033317 -0.13745 -0.00012707 924.4426199834253 27.504 0.28688 27.504 27.392 27.679 0 24 13 2 0 0 0 0.018301 1 14159 14159 65.235 3.6331 1 3809800 41488 2985 27570 28271 48712 48712 -0.029919688959580526 NAAQTSVAY 9 Unmodified _NAAQTSVAY_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7245788574219 2 462.724707 923.43486 NaN NaN NaN NaN NaN NaN NaN 27.482 1 27.482 26.982 27.982 0 0 0 0 0.20153 1 14161 14161 30.637 11.198 1 41489 2985 27570 28271 48713 48713 -0.029919688959580526 NAAQTSVAY 9 Unmodified _NAAQTSVAY_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7250061035156 2 462.724707 923.43486 NaN NaN NaN NaN NaN NaN NaN 27.674 1 27.674 27.174 28.174 0 0 0 0 0.074615 1 14265 14265 49.933 23.592 1 41490 2985 27570 28271 48714 48714 -0.029919688959580526 NAAQTSVAY 9 Unmodified _NAAQTSVAY_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7256164550781 2 462.724707 923.43486 0.83949 0.00038845 0.03767 1.7431E-05 0.87716 0.00040588 462.7247067402584 32.026 0.42109 28.33 28.122 28.543 -3.6958 51 23 3 0 0 0 0.020973 2 18117 18117;18240 62.573 34.086 1 40302000 41491 2985 27570 28271 48715;48716 48715 -0.029919688959580526 NAAQTSVAY 9 Unmodified _NAAQTSVAY_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.4420166015625 1 924.442137 923.43486 0.80995 0.00074875 -0.90374 -0.00083546 -0.093792 -8.6705E-05 924.4414463468839 32.032 0.27106 28.336 28.19 28.461 -3.6958 19 14 2 0 0 0 0.0082661 1 18176 18176 92.491 44.146 1 9597500 41492 2985 27570 28271 48717 48717 -0.029919688959580526 NAARDFVNY 9 Unmodified _NAARDFVNY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2568969726562 2 535.256705 1068.49886 0.67307 0.00036027 -0.23076 -0.00012352 0.44231 0.00023675 535.2564886451723 36.764 0.32862 36.764 36.588 36.916 0 54 15 4 0 0 0 0.0074582 2 19557 19458;19557 110.55 69.317 1 70055000 41493 4745 27571 28272 48718;48719 48719 -0.032651887390102274 NAARDFVNY 9 Unmodified _NAARDFVNY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2572631835938 2 535.256705 1068.49886 -0.3314 -0.00017738 1.2809 0.00068563 0.94953 0.00050824 535.2570286189692 37.034 0.32213 36.784 36.644 36.966 -0.2497 34 13 3 0 0 0 0.010301 2 19423 19423;19525 79.596 56.448 1 8199900 41494 4745 27571 28272 48720;48721 48720 -0.032651887390102274 NAARDFVNY 9 Unmodified _NAARDFVNY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.256591796875 2 535.256705 1068.49886 -0.26063 -0.00013951 0.52708 0.00028212 0.26645 0.00014262 535.256993691981 36.736 0.17514 36.757 36.661 36.836 0.021545 12 7 2 0 0 0 0.085319 1 19469 19469 36.506 21.668 1 1314500 41495 4745 27571 28272 48722 48722 -0.032651887390102274 NAARDFVNY 9 Unmodified _NAARDFVNY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2569580078125 2 535.256705 1068.49886 1.5392 0.00082385 -0.73968 -0.00039592 0.79949 0.00042793 535.2562987194298 41.752 0.51794 37.144 36.894 37.412 -4.6079 104 32 4 0 0 0 0.0061223 3 24989 24989;25127;25271 114.2 80.099 1 149950000 41496 4745 27571 28272 48723;48724;48725 48723 -0.032651887390102274 NAARSQLETY 10 Unmodified _NAARSQLETY_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7884521484375 2 576.785827 1151.5571 -0.15038 -8.6735E-05 -1.0328 -0.00059572 -1.1832 -0.00068245 576.7854067234281 24.927 0.25975 24.927 24.76 25.02 0 61 28 3 0 0 0 0.017375 1 12730 12730 78.06 26.645 1 7044000 41497 7726 27572 28273 48726 48726 -0.012615518843631435 NAARSQLETY 10 Unmodified _NAARSQLETY_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7882080078125 2 576.785827 1151.5571 0.46039 0.00026554 0.2451 0.00014137 0.70549 0.00040692 576.7861527647367 27.953 0.29265 24.805 24.623 24.915 -3.1482 26 15 2 0 0 0 0.0042881 1 15529 15529 100.71 41.34 1 11944000 41498 7726 27572 28273 48727 48727 -0.012615518843631435 NAARTQLETY 10 Unmodified _NAARTQLETY_ 0 0 0 nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000465876.5_1_1:60281005-60331594:+|nuORF nc|ENSG00000134709|Q9UJC3-2|HOOK1 nc|ENSG00000134709|Q9UJC3-2|HOOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7937622070312 2 583.793652 1165.57275 -0.49428 -0.00028856 0.66409 0.00038769 0.16981 9.9135E-05 583.793933446524 26.689 0.21144 26.689 26.571 26.782 0 14 9 2 0 0 0 0.14688 1 13728 13728 40.239 13.971 1 1304900 41499 4632 27573 28274 48728 48728 -0.0034126536731946544 NAARTQLETY 10 Unmodified _NAARTQLETY_ 0 0 0 nc|ENSG00000134709|Q9UJC3-2|HOOK1;ENSG00000134709|ENST00000371208|HOOK1;ENST00000465876.5_1_1:60281005-60331594:+|nuORF nc|ENSG00000134709|Q9UJC3-2|HOOK1 nc|ENSG00000134709|Q9UJC3-2|HOOK1 MSMS AL20221201_MKP_PDAC_01 4 583.7938232421875 2 583.793652 1165.57275 NaN NaN NaN NaN NaN NaN NaN 29.97 1 26.668 26.168 27.168 -3.3016 0 0 0 0.018269 1 16886 16886 65.474 32.688 1 41500 4632 27573 28274 48729 48729 -0.0034126536731946544 NAATDNIAF 9 Unmodified _NAATDNIAF_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.441162109375 1 936.442137 935.43486 0.59064 0.0005531 -0.27572 -0.0002582 0.31491 0.0002949 936.4424452727216 49.618 0.18431 49.618 49.465 49.649 0 12 7 2 0 0 0 0.1685 1 27275 27275 26.268 11.43 1 1499000 41501 3522 27574 28275 48730 48730 -0.03543968895951366 NAATDNIAF 9 Unmodified _NAATDNIAF_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7251281738281 2 468.724707 935.43486 0.82986 0.00038898 -1.2166 -0.00057027 -0.38677 -0.00018129 468.7244357872822 49.59 0.3184 49.59 49.416 49.735 0 37 13 4 0 0 0 0.018301 1 27278 27278 65.235 25.278 1 10802000 41502 3522 27574 28275 48731 48731 -0.03543968895951366 NAATIKDVF 9 Unmodified _NAATIKDVF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7668762207031 2 489.766374 977.518196 0.14344 7.0251E-05 -0.21024 -0.00010297 -0.0668 -3.2716E-05 489.766338089889 46.882 0.30398 46.882 46.718 47.022 0 26 14 3 0 0 0 0.029718 1 25606 25606 55.503 30.103 1 6465800 41503 313 27575 28276 48732 48732 0.028537675519032746 NAATIKDVF 9 Unmodified _NAATIKDVF_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MSMS AL20221201_MKP_PDAC_01 4 489.765625 2 489.766374 977.518196 NaN NaN NaN NaN NaN NaN NaN 52.394 1 46.66 46.16 47.16 -5.7345 0 0 0 0.06887 1 33073 33073 51.415 7.5569 1 41504 313 27575 28276 48733 48733 0.028537675519032746 NAAYPSVSY 9 Unmodified _NAAYPSVSY_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2276611328125 2 486.227082 970.439611 0.53569 0.00026047 1.1645 0.00056619 1.7001 0.00082666 486.2273802038556 42.351 0.28969 42.351 42.218 42.507 0 21 13 2 0 0 0 0.14602 1 22918 22918 28.487 5.3384 1 2346700 41505 5110 27576 28277 48734 48734 -0.04679084753183815 NACDHLSGF 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))DHLSGF_ NAC(1)DHLSGF NAC(79)DHLSGF 0 1 0 ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 ENSG00000115128|ENST00000233468|SF3B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.71435546875 2 510.713816 1019.41308 0.25148 0.00012843 0.2753 0.0001406 0.52678 0.00026903 510.71408570470254 39.769 0.25957 35.24 35.096 35.356 -4.5294 27 16 2 0 0 0 0.010611 1 23682 23682 78.728 49.646 1 14121000 41506 3087 27577 28278 48735 48735 318 -0.09585096916157454 NACGLYHKM 9 Carbamidomethyl (C),Oxidation (M) _NAC(Carbamidomethyl (C))GLYHKM(Oxidation (M))_ NAC(1)GLYHKM NACGLYHKM(1) NAC(44)GLYHKM NACGLYHKM(44) 0 1 1 nc|ENSG00000102145|P15976-2|GATA1;ENSG00000102145|ENST00000376670|GATA1;nc|ENSG00000102145|P15976-3|GATA1;nc|ENSG00000136574|P43694|GATA4;nc|ENSG00000107485|P23771|GATA3;ENSG00000136574|ENST00000532059|GATA4;ENSG00000107485|ENST00000379328|GATA3;nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2 nc|ENSG00000102145|P15976-2|GATA1;nc|ENSG00000179348|P23769-2|GATA2 nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2471313476562 2 555.246969 1108.47938 0.23209 0.00012887 0.63824 0.00035438 0.87034 0.00048325 555.2474125889707 16.472 0.24169 13.915 13.765 14.007 -2.557 57 34 2 0 0 0 0.05447 1 8576 8576 43.858 31.618 1 3071500 41507 8830;2022 27578 28279 48736 48736 200 349 -0.07051604345747364 NACGLYHKM 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))GLYHKM_ NAC(1)GLYHKM NAC(42)GLYHKM 0 1 0 nc|ENSG00000102145|P15976-2|GATA1;ENSG00000102145|ENST00000376670|GATA1;nc|ENSG00000102145|P15976-3|GATA1;nc|ENSG00000136574|P43694|GATA4;nc|ENSG00000107485|P23771|GATA3;ENSG00000136574|ENST00000532059|GATA4;ENSG00000107485|ENST00000379328|GATA3;nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2 nc|ENSG00000102145|P15976-2|GATA1;nc|ENSG00000179348|P23769-2|GATA2 nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1695251464844 3 365.168766 1092.48447 0.85657 0.00031279 -0.52466 -0.00019159 0.33191 0.0001212 365.16877869698726 23.841 0.53259 21.014 20.791 21.323 -2.8273 107 31 4 0 0 0 0.062454 1 12854 12854 41.956 30.461 1 38098000 41508 8830;2022 27578 28280 48737 48737 200 -0.05807300483161271 NACGLYHKM 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))GLYHKM_ NAC(1)GLYHKM NAC(68)GLYHKM 0 1 0 nc|ENSG00000102145|P15976-2|GATA1;ENSG00000102145|ENST00000376670|GATA1;nc|ENSG00000102145|P15976-3|GATA1;nc|ENSG00000136574|P43694|GATA4;nc|ENSG00000107485|P23771|GATA3;ENSG00000136574|ENST00000532059|GATA4;ENSG00000107485|ENST00000379328|GATA3;nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2 nc|ENSG00000102145|P15976-2|GATA1;nc|ENSG00000179348|P23769-2|GATA2 nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2516479492188 2 547.249511 1092.48447 0.12759 6.9824E-05 0.80191 0.00043885 0.9295 0.00050867 547.2512528628787 23.826 0.404 20.998 20.809 21.213 -2.8273 42 24 3 0 0 0 0.015445 1 12958 12958 68.081 36.812 1 13275000 41509 8830;2022 27578 28280 48738 48738 200 -0.05807300483161271 NACGLYSKM 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))GLYSKM_ NAC(1)GLYSKM NAC(51)GLYSKM 0 1 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2367553710938 2 522.23607 1042.45759 1.2896 0.00067348 -1.1356 -0.00059304 0.15402 8.0435E-05 522.2350772735606 35.77 0.31488 31.577 31.409 31.724 -4.1928 31 19 2 0 0 0 0.037253 1 20824 20824 51.415 26.016 1 8003700 41510 5333 27579 28281 48739 48739 548 -0.06194409094337061 NACLIDISY 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))LIDISY_ NAC(1)LIDISY NAC(46)LIDISY 0 1 0 ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENSG00000107863|ENST00000396432|ARHGAP21 ENSG00000107863|ENST00000396432|ARHGAP21 MSMS AL20221201_MKP_PDAC_01 4 534.7536010742188 2 534.755149 1067.49575 NaN NaN NaN NaN NaN NaN NaN 77.04 1 70.864 70.364 71.364 -6.1757 0 0 0 0.08978 1 50387 50387 46.021 22 1 41511 2523 27580 28282 48740 48740 256 -0.03530199908027498 NACQALDSL 9 Carbamidomethyl (C) _NAC(Carbamidomethyl (C))QALDSL_ NAC(1)QALDSL NAC(48)QALDSL 0 1 0 ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2285461425781 2 496.229299 990.444045 0.23906 0.00011863 -0.19988 -9.9187E-05 0.03918 1.9442E-05 496.229113122474 56.162 0.30234 50.185 50.002 50.304 -5.9769 24 17 2 0 0 0 0.044011 1 35893 35893 47.749 22.349 1 25444000 41512 4140 27581 28283 48741 48741 415 -0.05155943601914714 NADHTTLLL 9 Unmodified _NADHTTLLL_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2694091796875 2 499.269281 996.52401 0.48173 0.00024051 -0.68206 -0.00034053 -0.20033 -0.00010002 499.2688900609005 51.612 0.27642 51.612 51.454 51.73 0 23 12 2 0 0 0 0.014417 1 28508 28508 69.105 16.837 1 8763100 41513 6744 27582 28284 48742 48742 0.025608660635725755 NADNRLLYEL 10 Unmodified _NADNRLLYEL_ 0 0 0 REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF REV__ENST00000498524.5_1_3:15727727-15838055:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5471801757812 3 407.547177 1219.6197 1.2825 0.0005227 -0.82537 -0.00033638 0.45718 0.00018632 407.546858975977 20.626 0.92709 17.933 17.544 18.471 -2.693 155 55 4 0 0 0 0.62068 1 11241 11241 8.9762 2.3528 1 33296000 + 41514 24260 27583 28285 48743 48743 0.018675941838182553 NADPQAVTM 9 Oxidation (M) _NADPQAVTM(Oxidation (M))_ NADPQAVTM(1) NADPQAVTM(110) 0 0 1 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7161254882812 2 481.716024 961.417496 -0.28564 -0.0001376 0.10391 5.0054E-05 -0.18173 -8.7544E-05 481.7160655266196 19.315 0.69426 19.315 18.965 19.659 0 186 64 4 0 0 0 0.0059585 3 9586 9487;9586;9682 114.65 59.876 1 10870000 41515 2036 27584 28286 48744;48745;48746 48745 350 -0.0647563249325458 NADPQAVTM 9 Oxidation (M) _NADPQAVTM(Oxidation (M))_ NADPQAVTM(1) NADPQAVTM(120) 0 0 1 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7163696289062 2 481.716024 961.417496 0.64031 0.00030845 -0.15575 -7.5027E-05 0.48456 0.00023342 481.7160055928233 22.42 0.72794 19.642 19.33 20.058 -2.7784 116 45 4 0 0 0 0.0047067 3 12059 11955;12059;12164 118.07 63.295 1 28058000 41516 2036 27584 28286 48747;48748;48749 48748 350 -0.0647563249325458 NADPQAVTM 9 Unmodified _NADPQAVTM_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7181396484375 2 473.718567 945.422581 -1.1148 -0.00052809 0.44173 0.00020926 -0.67305 -0.00031884 473.71845414488945 32.458 0.22578 32.458 32.393 32.618 0 24 14 2 0 0 0 0.07087 1 16964 16964 39.95 19.496 1 10538000 41517 2036 27584 28287 48750 48750 -0.052313286306457485 NADPQAVTM 9 Unmodified _NADPQAVTM_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7182922363281 2 473.718567 945.422581 0.81195 0.00038464 -1.4683 -0.00069557 -0.65637 -0.00031094 473.7183858263925 38.241 0.70658 33.872 33.419 34.126 -4.3689 103 42 4 0 0 0 0.029718 3 22526 22399;22526;22655 55.503 27.016 1 130610000 41518 2036 27584 28287 48751;48752;48753 48752 -0.052313286306457485 NADPQAVTM 9 Unmodified _NADPQAVTM_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.4281616210938 1 946.429858 945.422581 0.27602 0.00026124 0.10641 0.00010071 0.38243 0.00036194 946.4299049721852 38.241 0.40632 33.872 33.686 34.092 -4.3689 41 24 2 0 0 0 0.0030184 2 22453 22453;22581 126.57 80.545 1 23080000 41519 2036 27584 28287 48754;48755 48754 -0.052313286306457485 NADQFFQD 8 Unmodified _NADQFFQD_ 0 0 0 REV__nc|ENSG00000182177|Q6ZVZ8-2|ASB18 REV__nc|ENSG00000182177|Q6ZVZ8-2|ASB18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2705993652344 2 492.706514 983.398475 -0.39419 -0.00019422 0.026864 1.3236E-05 -0.36732 -0.00018098 492.70716008214373 19.208 0.38095 19.208 19.11 19.491 0 35 26 2 0 0 0 8.7369 1 9553 9553 5.2307 0.90143 1 652980 + 41520 29830 27585 28288 48756 48756 -0.09388845792659595 NADQVLLIF 9 Unmodified _NADQVLLIF_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7904052734375 2 516.78985 1031.56515 0.28978 0.00014975 -0.7619 -0.00039374 -0.47212 -0.00024399 516.7894666604304 97.424 0.31236 97.181 97.001 97.313 -0.24277 23 13 2 0 0 0 0.28023 2 53144 53144;53260 18.146 7.3224 1 2065400 41521 5275 27586 28289 48757;48758 48757 0.05062627103052364 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.5145263671875 1 963.514573 962.507297 0.14818 0.00014277 0.50556 0.00048711 0.65374 0.00062989 963.5150981469922 86.924 0.58784 86.924 86.725 87.313 0 104 36 4 0 0 0 0.0044708 3 48163 48033;48060;48163 118.89 45.763 1 10872000 41522 4431 27587 28290 48759;48760;48761 48761 0.02454365177618456 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2609558105469 2 482.260925 962.507297 0.2728 0.00013156 0.34967 0.00016863 0.62248 0.0003002 482.26111378192724 86.925 0.52283 86.925 86.745 87.268 0 87 33 4 0 0 0 0.0082661 2 48164 48065;48164 92.491 44.146 1 6851600 41523 4431 27587 28290 48762;48763 48763 0.02454365177618456 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5151977539062 1 963.514573 962.507297 0.38029 0.00036642 0.16092 0.00015505 0.54121 0.00052146 963.5146205472771 87.439 0.52173 86.934 86.655 87.177 -0.50423 64 22 4 0 0 0 0.0044708 3 47831 47732;47831;47926 118.89 53.66 1 10869000 41524 4431 27587 28290 48764;48765;48766 48765 0.02454365177618456 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2612609863281 2 482.260925 962.507297 0.58727 0.00028322 -0.16269 -7.8461E-05 0.42457 0.00020476 482.26081324848343 87.356 0.42629 86.851 86.655 87.081 -0.50423 58 17 4 0 0 0 0.009483 2 47832 47740;47832 81.89 41.933 1 6571500 41525 4431 27587 28290 48767;48768 48768 0.02454365177618456 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 963.5154418945312 1 963.514573 962.507297 0.90981 0.00087662 0.31081 0.00029947 1.2206 0.0011761 963.5145061734601 94.766 0.85526 88.59 88.233 89.089 -6.1757 118 48 3 0 0 0 0.0044708 4 62779 62654;62779;62892;63013 118.89 43.966 1 46929000 41526 4431 27587 28290 48769;48770;48771;48772 48770 0.02454365177618456 NADTLALVF 9 Unmodified _NADTLALVF_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2615661621094 2 482.260925 962.507297 1.1226 0.00054141 0.36054 0.00017388 1.4832 0.00071528 482.2608761393938 94.837 1.1808 88.662 88.135 89.316 -6.1757 159 67 3 0 0 0 0.009483 3 62826 62704;62826;62943 81.89 33.544 1 67498000 41527 4431 27587 28290 48773;48774;48775 48774 0.02454365177618456 NAECQLQLHNF 11 Unmodified _NAECQLQLHNF_ 0 0 0 ENSG00000182256|ENST00000615808|GABRG3;nc|ENSG00000182256|Q99928-2|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.8060302734375 2 658.806236 1315.59792 -0.025591 -1.686E-05 0.38568 0.00025409 0.36009 0.00023723 658.8064549387688 91.379 0.25282 91.379 91.24 91.493 0 32 16 3 0 0 0 0.73115 1 50484 50484 1.3295 0.72803 1 422240 41528 9038 27588 28291 48776 48776 -0.047255338364038835 NAEEDHYL 8 Unmodified _NAEEDHYL_ 0 0 0 REV__ENST00000488353.2_3_1:2333717-2334484:+|nuORF REV__ENST00000488353.2_3_1:2333717-2334484:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7128601074219 2 495.711796 989.40904 -0.30671 -0.00015204 2.7611 0.0013687 2.4544 0.0012167 495.71298225182954 25.21 0.44414 25.21 25.003 25.447 0 39 24 2 0 0 0 0.80143 1 12953 12953 5.7604 1.0044 1 1025500 + 41529 27844 27589 28292 48777 48777 -0.08608863138238121 NAEESEIRY 9 Unmodified _NAEESEIRY_ 0 0 0 ENSG00000229894|ENST00000505354|GK3;nc|ENSG00000198814|P32189-1|GK;nc|ENSG00000198814|P32189-4|GK;nc|ENSG00000198814|P32189-2|GK;ENSG00000198814|ENST00000427190|GK ENSG00000229894|ENST00000505354|GK3 ENSG00000229894|ENST00000505354|GK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7566528320312 2 555.756735 1109.49892 -0.26336 -0.00014636 0.96457 0.00053607 0.70121 0.0003897 556.2590082591297 28.596 0.15901 28.596 28.503 28.662 0 17 7 3 0 0 0 0.017075 1 14786 14786 66.457 34.419 1 1760300 41530 10609 27590 28293 48778 48778 -0.05145233529651705 NAEGIIEF 8 Unmodified _NAEGIIEF_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 892.4395751953125 1 892.441074 891.433798 0.22761 0.00020313 0.16334 0.00014577 0.39095 0.0003489 892.4409671829006 67.426 0.18895 67.426 67.294 67.483 0 11 7 2 0 0 0 0.79783 1 37574 37574 7.9102 0 1 628520 41531 7163;16335 27591 28294 48779 48779 -0.016261832648524432 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7747192382812 2 566.774731 1131.53491 0.38152 0.00021624 0.72498 0.0004109 1.1065 0.00062714 566.7752117512117 54.126 0.61743 53.659 53.487 54.104 -0.46664 113 31 8 0 0 0 0.19127 1 29271 29271 24.021 2.4836 1 46551000 41532 5657 27592 28295 48780 48780 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7744750976562 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 56.102 1 56.034 55.534 56.534 -0.068737 0 0 0 0.20153 1 30506 30506 30.637 5.6456 1 41533 5657 27592 28295 48781 48781 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.775634765625 2 566.774731 1131.53491 NaN NaN NaN NaN NaN NaN NaN 57.434 1 57.368 56.868 57.868 -0.066036 0 0 0 0.43483 1 31262 31262 18.146 3.741 1 41534 5657 27592 28295 48782 48782 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7754516601562 2 566.774731 1131.53491 1.084 0.00061437 -1.039 -0.0005889 0.044945 2.5474E-05 566.7739617362607 59.758 1.9733 53.643 53.357 55.33 -6.1147 380 105 6 0 0 0 0.047196 10 39273 38243;38375;38514;38646;38772;38901;39026;39149;39273;39404 46.021 10.183 1 8300199999.999999 41535 5657 27592 28295 48783;48784;48785;48786;48787;48788;48789;48790;48791;48792 48791 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.775390625 2 566.774731 1131.53491 1.073 0.00060818 0.25916 0.00014688 1.3322 0.00075506 566.7747938493817 61.76 1.4898 55.584 55.248 56.737 -6.1757 247 79 4 0 0 0 0.07916 8 39777 39657;39777;39909;40038;40169;40299;40428;40551 37.974 11.09 1 632570000 41536 5657 27592 28295 48793;48794;48795;48796;48797;48798;48799;48800 48794 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7762451171875 2 566.774731 1131.53491 1.1746 0.00066572 -0.24081 -0.00013648 0.93377 0.00052924 566.7744342556144 63.451 1.774 57.276 56.676 58.45 -6.1757 384 97 6 0 0 0 0.07916 8 40694 40694;40823;40954;41093;41231;41371;41506;41644 37.974 10.183 1 1823899999.9999998 41537 5657 27592 28295 48801;48802;48803;48804;48805;48806;48807;48808 48801 -0.025597315621325833 NAELWQVSW 9 Unmodified _NAELWQVSW_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 566.774731 1131.53491 0.94409 0.00053509 -1.8278 -0.0010359 -0.8837 -0.00050086 566.7734462812839 57.034 0.21554 56.968 56.841 57.057 -0.066036 -0.15393 -0.0017437 NaN 37.974 11 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2115400 41538 5657 27592 28295 -0.025597315621325833 NAENEFVTIK 10 Unmodified _NAENEFVTIK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.8005981445312 2 582.798403 1163.58225 NaN NaN NaN NaN NaN NaN NaN 41.206 1 41.206 40.706 41.706 0 0 0 0 0.017755 1 22202 22202 77.049 31.349 1 + 41539 7667 27593 28296 48809 48809 0.007005029181982536 NAERQLVL 8 Unmodified _NAERQLVL_ 0 0 0 REV__ENSG00000135870|ENST00000367696|RC3H1 REV__ENSG00000135870|ENST00000367696|RC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7728271484375 2 471.771991 941.529429 -0.19541 -9.2187E-05 1.1162 0.00052661 0.92083 0.00043442 471.7724982575248 31.818 0.28259 31.818 31.7 31.983 0 21 13 2 0 0 0 0.58902 1 16590 16590 26.884 5.137 1 1216700 + 41540 20104 27594 28297 48810 48810 0.05632589646052111 NAERQLVL 8 Unmodified _NAERQLVL_ 0 0 0 REV__ENSG00000135870|ENST00000367696|RC3H1 REV__ENSG00000135870|ENST00000367696|RC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7723999023438 2 471.771991 941.529429 0.14002 6.6055E-05 0.79822 0.00037658 0.93823 0.00044263 471.7724045712751 31.775 0.41141 31.646 31.454 31.866 -0.12915 38 16 3 0 0 0 0.64853 2 16493 16493;16592 21.747 0 1 6588200 + 41541 20104 27594 28297 48811;48812 48811 0.05632589646052111 NAESGRGQVM 10 Unmodified _NAESGRGQVM_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7451171875 2 524.745647 1047.47674 -0.19288 -0.00010121 0.52798 0.00027705 0.3351 0.00017584 524.7458889337748 16.82 0.30311 16.82 16.579 16.882 0 120 74 2 0 0 0 0.52097 1 8169 8169 15.248 7.9593 1 676750 41542 394 27595 28298 48813 48813 -0.045097364790763095 NAESGRGQVM 10 Unmodified _NAESGRGQVM_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7462158203125 2 524.745647 1047.47674 NaN NaN NaN NaN NaN NaN NaN 16.356 1 16.356 15.856 16.856 0 0 0 0 0.80141 1 7967 7967 12.241 4.9514 1 41543 394 27595 28298 48814 48814 -0.045097364790763095 NAESGRGQVM 10 Unmodified _NAESGRGQVM_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7463989257812 2 524.745647 1047.47674 0.59339 0.00031138 -0.45254 -0.00023747 0.14085 7.3908E-05 524.7457948480823 17.847 0.40842 15.26 15.05 15.458 -2.5866 128 43 4 0 0 0 0.0065755 3 9363 9259;9363;9470 93.938 63.302 1 17747000 41544 394 27595 28298 48815;48816;48817 48816 -0.045097364790763095 NAESQELIY 9 Unmodified _NAESQELIY_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7571411132812 2 533.756204 1065.49785 0.62284 0.00033244 -0.33036 -0.00017633 0.29247 0.00015611 533.7557644343799 46.554 0.26583 46.554 46.412 46.678 0 15 11 2 0 0 0 0.18144 1 25466 25466 24.991 4.5764 1 2302100 41545 10632 27596 28299 48818 48818 -0.03227447898530045 NAETYASYF 9 Unmodified _NAETYASYF_ 0 0 0 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 ENSG00000145388|ENST00000388822|METTL14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2950439453125 2 533.229822 1064.44509 -0.46725 -0.00024915 -0.63926 -0.00034087 -1.1065 -0.00059002 533.2297146876336 55.357 0.22512 55.357 55.327 55.552 0 16 9 2 0 0 0 0.18882 1 30744 30744 10.824 0 1 1465100 41546 5692 27597 28300 48819 48819 -0.08455405961376528 NAEYACYKA 9 Unmodified _NAEYACYKA_ 0 0 0 ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP ENSG00000076864|ENST00000374765|RAP1GAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7247314453125 2 516.726392 1031.43823 -0.32529 -0.00016809 -1.8902 -0.00097669 -2.2155 -0.0011448 517.2268359044874 33.528 0.18847 33.369 33.247 33.436 -0.15919 12 7 2 0 0 0 0.59218 1 17520 17520 1.8442 0.36234 1 1050300 41547 1196 27598 28301 48820 48820 -0.07623042113596057 NAFAFNRHLE 10 Unmodified _NAFAFNRHLE_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8058471679688 2 609.804354 1217.59415 NaN NaN NaN NaN NaN NaN NaN 86.001 1 86.001 85.501 86.501 0 0 0 0 0.89532 1 47646 47646 8.1555 0.8663 1 41548 5327 27599 28302 48821 48821 -0.005938355479429447 NAFAFWMTP 9 Oxidation (M) _NAFAFWM(Oxidation (M))TP_ NAFAFWM(1)TP NAFAFWM(42)TP 0 0 1 ENSG00000130876|ENST00000253188|SLC7A10 ENSG00000130876|ENST00000253188|SLC7A10 ENSG00000130876|ENST00000253188|SLC7A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7488403320312 2 550.747127 1099.4797 0.53649 0.00029547 1.2251 0.00067473 1.7616 0.0009702 550.7478153659802 38.292 0.63018 38.292 37.846 38.476 0 81 42 2 0 0 0 0.06187 1 20366 20366 42.095 9.7891 1 112210000 41549 4273 27600 28303 48822 48822 758 -0.06605861354273657 NAFASVILF 9 Unmodified _NAFASVILF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.R353M|1|0.19|ENSG00000254772|chr11:62560166-62560166|C/A|missense_variant;ENST00000434365.1_1_X:114938170-114938437:+|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2759704589844 2 491.273835 980.533118 4.5497 0.0022351 -0.62992 -0.00030947 3.9198 0.0019257 491.2735853425044 98.988 0.19513 98.96 98.833 99.028 -0.028282 17 6 3 0 0 0 0.010818 1 54957 54957 78.149 33.742 1 7959800 41550 10781 27601 28304 48823 48823 0.042072594199112245 NAFASVILF 9 Unmodified _NAFASVILF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.R353M|1|0.19|ENSG00000254772|chr11:62560166-62560166|C/A|missense_variant;ENST00000434365.1_1_X:114938170-114938437:+|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 981.5452270507812 1 981.540394 980.533118 4.5586 0.0044744 -0.10082 -9.8954E-05 4.4578 0.0043755 981.5400250535844 98.964 0.19513 98.936 98.833 99.028 -0.028282 12 6 3 0 0 0 0.010818 1 54964 54964 78.149 33.742 1 7544200 41551 10781 27601 28304 48824 48824 0.042072594199112245 NAFASVILF 9 Unmodified _NAFASVILF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.R353M|1|0.19|ENSG00000254772|chr11:62560166-62560166|C/A|missense_variant;ENST00000434365.1_1_X:114938170-114938437:+|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 981.5432739257812 1 981.540394 980.533118 1.4218 0.0013955 0.0019461 1.9102E-06 1.4237 0.0013974 981.5402096602973 100.98 0.13567 94.807 94.734 94.869 -6.1757 16 7 3 0 0 0 0.0088174 1 67652 67652 103.75 40.185 1 56630000 41552 10781 27601 28304 48825 48825 0.042072594199112245 NAFASVILF 9 Unmodified _NAFASVILF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF;EEF1G|p.R353M|1|0.19|ENSG00000254772|chr11:62560166-62560166|C/A|missense_variant;ENST00000434365.1_1_X:114938170-114938437:+|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2748718261719 2 491.273835 980.533118 1.4527 0.00071368 0.45997 0.00022597 1.9127 0.00093965 491.2742544329601 100.99 0.11604 94.818 94.734 94.85 -6.1757 16 6 3 0 0 0 0.015445 1 67666 67666 68.081 32.037 1 64994000 41553 10781 27601 28304 48826 48826 0.042072594199112245 NAFDIAEEL 9 Unmodified _NAFDIAEEL_ 0 0 0 nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3 nc|ENSG00000071655|O95983-2|MBD3 nc|ENSG00000071655|O95983-2|MBD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2452087402344 2 511.245472 1020.47639 0.29427 0.00015045 -0.81835 -0.00041838 -0.52407 -0.00026793 511.2451807950085 77.329 0.37215 77.329 77.105 77.477 0 61 21 5 0 0 0 0.020973 2 43012 42909;43012 62.573 26.446 1 20462000 41554 1061 27602 28305 48827;48828 48828 -0.03302832927295185 NAFDIAEEL 9 Unmodified _NAFDIAEEL_ 0 0 0 nc|ENSG00000071655|O95983-2|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000071655|ENST00000434436|MBD3 nc|ENSG00000071655|O95983-2|MBD3 nc|ENSG00000071655|O95983-2|MBD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2463684082031 2 511.245472 1020.47639 0.56824 0.00029051 -0.075904 -3.8805E-05 0.49234 0.0002517 511.2454916912069 85.737 0.50828 79.562 79.361 79.87 -6.1757 68 28 3 0 0 0 0.0086722 3 56399 56399;56535;56666 88.954 41.205 1 42951000 41555 1061 27602 28305 48829;48830;48831 48829 -0.03302832927295185 NAFDPTLP 8 Unmodified _NAFDPTLP_ 0 0 0 ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A;ENST00000607780.5_1_2:96676383-96687353:+|nuORF;ENST00000483657.1_1_2:97755791-97757446:-|nuORF;ENST00000463940.1_1_2:96071303-96072959:+|nuORF ENSG00000144199|ENST00000414820|FAHD2B ENSG00000144199|ENST00000414820|FAHD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4317626953125 1 874.430509 873.423233 0.1384 0.00012102 0.31835 0.00027837 0.45675 0.0003994 874.4308861567166 91.123 0.41906 91.123 90.906 91.325 0 54 23 3 0 0 0 0.79669 1 50323 50323 8.5933 0 1 4044200 41556 3080 27603 28306 48832 48832 -0.01854165919269235 NAFDPTLP 8 Unmodified _NAFDPTLP_ 0 0 0 ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A;ENST00000607780.5_1_2:96676383-96687353:+|nuORF;ENST00000483657.1_1_2:97755791-97757446:-|nuORF;ENST00000463940.1_1_2:96071303-96072959:+|nuORF ENSG00000144199|ENST00000414820|FAHD2B ENSG00000144199|ENST00000414820|FAHD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7191162109375 2 437.718893 873.423233 0.24096 0.00010547 0.11513 5.0396E-05 0.3561 0.00015587 437.7189338215114 91.122 0.35152 91.122 90.949 91.301 0 33 19 2 0 0 0 0.78849 1 50353 50353 9.3474 0 1 1571700 41557 3080 27603 28306 48833 48833 -0.01854165919269235 NAFDVFAAY 9 Unmodified _NAFDVFAAY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2372741699219 2 509.23745 1016.46035 0.34976 0.00017811 -0.039397 -2.0062E-05 0.31037 0.00015805 509.23734583903314 82.422 0.50684 82.422 82.149 82.656 0 66 21 4 0 0 0 0.018301 2 45741 45644;45741 65.235 34.474 1 17991000 41558 5307 27604 28307 48834;48835 48835 -0.04722494373527297 NAFDVFAAY 9 Unmodified _NAFDVFAAY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2369384765625 2 509.23745 1016.46035 0.284 0.00014462 -0.5691 -0.00028981 -0.2851 -0.00014518 509.2370466839135 82.933 0.73599 82.435 82.154 82.89 -0.49751 105 30 5 0 0 0 0.018301 3 45314 45314;45414;45523 65.235 27.261 1 106280000 41559 5307 27604 28307 48836;48837;48838 48836 -0.04722494373527297 NAFDVFAAY 9 Unmodified _NAFDVFAAY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2377014160156 2 509.23745 1016.46035 1.5821 0.00080568 -1.1914 -0.00060672 0.39071 0.00019897 509.2367250811082 82.336 0.36573 82.398 82.244 82.61 0.061996 37 13 4 0 0 0 0.018301 2 45534 45534;45639 65.235 29.108 1 15241000 41560 5307 27604 28307 48839;48840 48839 -0.04722494373527297 NAFDVFAAY 9 Unmodified _NAFDVFAAY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1017.469299316406 1 1017.46762 1016.46035 1.0505 0.0010688 -0.31548 -0.00032099 0.735 0.00074784 1017.467185487864 90.575 0.67705 84.399 84.127 84.804 -6.1757 96 40 3 0 0 0 0.0036082 1 59686 59686 123.45 34.547 1 75034000 41561 5307 27604 28307 48841 48841 -0.04722494373527297 NAFDVFAAY 9 Unmodified _NAFDVFAAY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2380065917969 2 509.23745 1016.46035 1.0754 0.00054764 -0.072598 -3.6969E-05 1.0028 0.00051067 509.2373740312049 90.598 1.2638 84.423 83.988 85.252 -6.1757 192 74 4 0 0 0 0.018301 3 59728 59728;59861;59991 65.235 32.93 1 272930000 41562 5307 27604 28307 48842;48843;48844 48842 -0.04722494373527297 NAFEAPLTF 9 Unmodified _NAFEAPLTF_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant;BRCA2|p.N1784Kfs*3|1|0.2|ENSG00000139618|chr13:32339699-32339700|-/A|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2544860839844 2 505.2531 1008.49165 0.47027 0.0002376 1.4512 0.00073324 1.9215 0.00097085 505.2532981405231 80.47 0.32158 79.978 79.83 80.152 -0.49248 27 12 3 0 0 0 0.15471 1 44073 44073 27.629 15.388 1 559710 41563 5169 27605 28308 48845 48845 -0.012259213394372637 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2589111328125 2 520.258382 1038.50221 0.37737 0.00019633 -0.1274 -6.6279E-05 0.24997 0.00013005 520.2582188439488 91.135 0.76901 91.135 90.859 91.628 0 140 45 5 0 0 0 0.03568 3 50312 50312;50406;50504 52.268 35.326 1 91210000 41564 2860 27606 28309 48846;48847;48848 48846 -0.015499386850024166 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2579345703125 2 520.258382 1038.50221 0.34082 0.00017732 -0.8023 -0.00041741 -0.46148 -0.00024009 520.2578800785362 91.647 1.001 91.166 90.902 91.903 -0.48092 172 57 5 0 0 0 0.0095811 3 50081 49988;50081;50182 81.613 49.308 1 150330000 41565 2860 27606 28309 48849;48850;48851 48850 -0.015499386850024166 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2583618164062 2 520.258382 1038.50221 0.30428 0.0001583 -0.12988 -6.7571E-05 0.1744 9.0732E-05 520.2583353898729 94.928 0.27438 94.56 94.423 94.698 -0.36815 25 13 3 0 0 0 0.48152 1 51863 51863 8.5933 3.8373 1 624020 41566 2860 27606 28309 48852 48852 -0.015499386850024166 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2584838867188 2 520.258382 1038.50221 0.82712 0.00043032 -0.30715 -0.0001598 0.51997 0.00027052 520.2582009548115 91.065 0.3998 91.102 90.926 91.326 0.036499 37 14 4 0 0 0 0.013323 2 50631 50631;50743 71.134 42.647 1 42000000 41567 2860 27606 28309 48853;48854 48853 -0.015499386850024166 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2596435546875 2 520.258382 1038.50221 0.41686 0.00021688 0.44309 0.00023052 0.85996 0.0004474 520.2585276427494 99.755 0.3252 93.579 93.365 93.691 -6.1757 72 21 5 0 0 0 0.022193 1 66469 66469 61.357 39.611 1 1929599999.9999998 41568 2860 27606 28309 48855 48855 -0.015499386850024166 NAFEELVAF 9 Unmodified _NAFEELVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.258382 1038.50221 0.37408 0.00019462 0.38334 0.00019943 0.75742 0.00039405 520.2583547792744 94.483 0.18718 94.483 94.349 94.536 0 -0.038808 0.0002964 NaN 8.5933 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 217220 41569 2860 27606 28309 -0.015499386850024166 NAFEHGGEFTY 11 Unmodified _NAFEHGGEFTY_ 0 0 0 nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.26953125 2 636.27001 1270.52547 -0.44267 -0.00028166 0.44488 0.00028307 0.0022172 1.4108E-06 636.2700393861621 44.819 0.21481 44.819 44.691 44.906 0 17 10 2 0 0 0 4.9562E-22 1 24386 24386 154.75 118.71 1 18697000 41570 7136 27607 28310 48856 48856 -0.09897544638306499 NAFEHGGEFTY 11 Unmodified _NAFEHGGEFTY_ 0 0 0 nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.2708129882812 2 636.27001 1270.52547 0.88915 0.00056574 -0.44282 -0.00028175 0.44633 0.00028398 636.2697794349643 50.621 0.33862 45.082 44.888 45.226 -5.5391 49 21 3 0 0 0 9.8906E-21 2 31699 31699;31833 147.24 112.31 1 52146000 41571 7136 27607 28310 48857;48858 48857 -0.09897544638306499 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7623291015625 2 535.761289 1069.50803 0.64402 0.00034504 0.99415 0.00053263 1.6382 0.00087767 535.7620999502918 42.449 0.61416 42.449 42.068 42.682 0 47 30 2 0 0 0 0.040683 2 22958 22958;23075 49.554 18.918 1 3547900 41572 4211 27608 28311 48859;48860 48859 -0.023948401733377978 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7605590820312 2 535.761289 1069.50803 -0.3295 -0.00017653 0.067908 3.6382E-05 -0.26159 -0.00014015 535.7612514579033 41.892 0.28788 41.585 41.433 41.72 -0.30682 34 13 3 0 0 0 0.012228 1 22201 22201 74.2 36.226 1 69596000 41573 4211 27608 28311 48861 48861 -0.023948401733377978 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.75927734375 2 535.761289 1069.50803 NaN NaN NaN NaN NaN NaN NaN 17.978 1 17.991 17.491 18.491 0.013865 0 0 0 0.83049 1 8980 8980 3.9444 0 1 41574 4211 27608 28311 48862 48862 -0.023948401733377978 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7610473632812 2 535.761289 1069.50803 -0.2513 -0.00013464 -0.0072865 -3.9038E-06 -0.25859 -0.00013854 535.7611957247221 41.651 0.29453 41.649 41.467 41.762 -0.0017929 43 13 4 0 0 0 0.0081887 2 22216 22216;22319 93.166 55.192 1 88026000 41575 4211 27608 28311 48863;48864 48863 -0.023948401733377978 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7628173828125 2 535.761289 1069.50803 0.4055 0.00021725 -0.13431 -7.196E-05 0.27119 0.00014529 535.7610761139102 46.777 0.64151 41.697 41.444 42.085 -5.0805 486 104 6 0 0 0 0.012228 4 28763 28763;28898;29027;29154 74.2 36.226 1 4968000000 41576 4211 27608 28311 48865;48866;48867;48868 48865 -0.023948401733377978 NAFEVAEKY 9 Unmodified _NAFEVAEKY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20221201_MKP_PDAC_01 4 535.7608642578125 2 535.761289 1069.50803 NaN NaN NaN NaN NaN NaN NaN 47.539 1 42.305 41.805 42.805 -5.2339 0 0 0 0.13463 1 29517 29517 38.615 10.986 1 41577 4211 27608 28311 48869 48869 -0.023948401733377978 NAFGPDGVQGF 11 Unmodified _NAFGPDGVQGF_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7576904296875 2 554.756538 1107.49852 0.56885 0.00031557 -0.19965 -0.00011076 0.3692 0.00020482 554.7564258068368 61.333 0.24047 61.333 61.193 61.433 0 19 10 2 0 0 0 0.58219 1 34179 34179 12.241 7.01 1 1028700 41578 1816 27609 28312 48870 48870 -0.050926084588581944 NAFKEITTM 9 Oxidation (M) _NAFKEITTM(Oxidation (M))_ NAFKEITTM(1) NAFKEITTM(110) 0 0 1 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7627563476562 2 535.762975 1069.5114 -1.1018 -0.00059029 -0.64702 -0.00034665 -1.7488 -0.00093693 535.7626995838833 32.466 0.47417 32.466 32.278 32.753 0 103 27 6 0 0 0 0.0074582 2 16901 16901;17008 110.55 50.479 1 650270000 41579 14178 27610 28313 48871;48872 48871 1770 -0.02057913391013244 NAFKEITTM 9 Oxidation (M) _NAFKEITTM(Oxidation (M))_ NAFKEITTM(1) NAFKEITTM(86) 0 0 1 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7630004882812 2 535.762975 1069.5114 -0.25316 -0.00013563 -0.12443 -6.6664E-05 -0.37758 -0.0002023 535.7630271492872 32.511 0.58014 32.382 32.095 32.675 -0.12915 101 24 5 0 0 0 0.0089732 2 16956 16850;16956 86.332 28.61 1 140130000 41580 14178 27610 28313 48873;48874 48874 1770 -0.02057913391013244 NAFKEITTM 9 Oxidation (M) _NAFKEITTM(Oxidation (M))_ NAFKEITTM(1) NAFKEITTM(93) 0 0 1 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7618408203125 2 535.762975 1069.5114 -0.13487 -7.2258E-05 -0.14047 -7.526E-05 -0.27534 -0.00014752 535.762871832456 32.341 0.45416 32.37 32.108 32.562 0.029743 50 19 4 0 0 0 0.0082475 2 16940 16940;17041 92.653 50.814 1 15780000 41581 14178 27610 28313 48875;48876 48875 1770 -0.02057913391013244 NAFKEITTM 9 Oxidation (M) _NAFKEITTM(Oxidation (M))_ NAFKEITTM(1) NAFKEITTM(83) 0 0 1 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7634887695312 2 535.762975 1069.5114 1.0985 0.00058852 -0.58903 -0.00031558 0.50944 0.00027294 535.7630275557325 37.088 0.70052 32.804 32.371 33.072 -4.2835 163 42 5 0 0 0 0.0093064 3 21626 21626;21755;21880 83.429 35.68 1 701210000 41582 14178 27610 28313 48877;48878;48879 48877 1770 -0.02057913391013244 NAFKEITTM 9 Unmodified _NAFKEITTM_ 0 0 0 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7657470703125 2 527.765517 1053.51648 1.0207 0.00053871 -0.52807 -0.0002787 0.49266 0.00026001 527.7651705199512 46.321 0.31165 46.321 46.149 46.461 0 39 14 3 0 0 0 0.0082475 2 25257 25257;25365 92.653 50.814 1 16798000 41583 14178 27610 28314 48880;48881 48880 -0.008136095283816758 NAFKEITTM 9 Unmodified _NAFKEITTM_ 0 0 0 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7655639648438 2 527.765517 1053.51648 0.49698 0.00026229 -0.51478 -0.00027168 -0.017797 -9.3928E-06 527.7653766607265 46.566 0.33146 46.229 46.073 46.404 -0.33664 53 16 4 0 0 0 0.0087807 2 24873 24873;24983 106.94 57.386 1 54827000 41584 14178 27610 28314 48882;48883 48882 -0.008136095283816758 NAFKEITTM 9 Unmodified _NAFKEITTM_ 0 0 0 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7666015625 2 527.765517 1053.51648 0.80246 0.00042351 0.096187 5.0764E-05 0.89865 0.00047428 527.7657756068066 46.271 0.20776 46.238 46.161 46.369 -0.033421 17 9 3 0 0 0 0.047788 1 24896 24896 45.7 21.679 1 4132300 41585 14178 27610 28314 48884 48884 -0.008136095283816758 NAFKEITTM 9 Unmodified _NAFKEITTM_ 0 0 0 ENST00000486078.1_1_1:89325774-89329699:-|nuORF;ENST00000494819.5_1_1:89324456-89357188:-|nuORF;ENSG00000137947|ENST00000370500|GTF2B ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7659301757812 2 527.765517 1053.51648 0.64367 0.00033971 -0.54362 -0.00028691 0.10005 5.2803E-05 527.7653096103421 52.306 0.87482 46.571 46.035 46.91 -5.7345 153 54 4 0 0 0 0.0082548 2 33052 33052;33171 96.367 54.527 1 1008299999.9999999 41586 14178 27610 28314 48885;48886 48885 -0.008136095283816758 NAFLDDPEF 9 Unmodified _NAFLDDPEF_ 0 0 0 ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2379150390625 2 534.237647 1066.46074 0.10723 5.7284E-05 0.34028 0.00018179 0.44751 0.00023907 534.2378955670755 70.33 0.52821 70.33 70.109 70.637 0 63 23 4 0 0 0 0.05447 2 39210 39107;39210 43.858 28.011 1 10657000 41587 631 27611 28315 48887;48888 48888 -0.06983119444339536 NAFLDDPEF 9 Unmodified _NAFLDDPEF_ 0 0 0 ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B ENSG00000038210|ENST00000264864|PI4K2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2376098632812 2 534.237647 1066.46074 0.28825 0.000154 -0.14389 -7.6874E-05 0.14436 7.7123E-05 534.2378442577981 78.603 0.55821 72.427 72.27 72.829 -6.1757 61 33 2 0 0 0 0.14 1 51430 51430 29.082 7.3349 1 18061000 41588 631 27611 28315 48889 48889 -0.06983119444339536 NAFLVTTYI 9 Unmodified _NAFLVTTYI_ 0 0 0 REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF REV__ENST00000506359.1_1_4:73012322-73013526:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.32666015625 2 521.2844 1040.55425 0.38741 0.00020195 0.66732 0.00034786 1.0547 0.00054981 521.2843040904557 99.781 0.080475 93.605 93.558 93.638 -6.1757 11 5 3 0 0 0 0.19613 1 66514 66514 7.9102 3.1541 1 14839000 + 41589 17297 27612 28316 48890 48890 0.035592247287468126 NAFPLSEP 8 Unmodified _NAFPLSEP_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.7192993164062 2 437.718893 873.423233 0.39839 0.00017438 -0.67212 -0.0002942 -0.27373 -0.00011982 437.7186129427171 91.646 0.33103 91.165 90.977 91.308 -0.48092 44 22 2 0 0 0 0.78849 1 50033 50033 9.3474 0 1 2581400 + 41590 23727 27613 28317 48891 48891 -0.018541659192806037 NAFSGVMMHV 10 Unmodified _NAFSGVMMHV_ 0 0 0 REV__ENST00000426620.5_1_3:38234779-38271948:+|nuORF REV__ENST00000426620.5_1_3:38234779-38271948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7503662109375 2 546.751887 1091.48922 -0.26428 -0.0001445 -1.3706 -0.00074937 -1.6349 -0.00089387 546.7511426740369 41.502 0.34565 41.502 41.385 41.731 0 30 17 2 0 0 0 0.51153 1 22374 22374 18.146 5.9057 1 20262000 + 41591 26911 27614 28318 48892 48892 -0.052864163403910425 NAFSGVMML 9 2 Oxidation (M) _NAFSGVM(Oxidation (M))M(Oxidation (M))L_ NAFSGVM(1)M(1)L NAFSGVM(48)M(48)L 0 0 2 ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 ENST00000368287.1_1_6:127648134-127664493:-|nuORF ENST00000368287.1_1_6:127648134-127664493:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2256774902344 2 501.225171 1000.43579 -0.24054 -0.00012056 -1.1429 -0.00057283 -1.3834 -0.0006934 501.2247435252821 54.683 0.29551 54.216 54.064 54.36 -0.46664 35 14 3 0 0 0 0.042911 2 29589 29589;29705 48.346 31.911 1 8874200 41592 1631 27615 28319 48893;48894 48893 274;275 -0.06441213842913385 NAFSGVMML 9 2 Oxidation (M) _NAFSGVM(Oxidation (M))M(Oxidation (M))L_ 0 0 2 ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1 ENST00000368287.1_1_6:127648134-127664493:-|nuORF ENST00000368287.1_1_6:127648134-127664493:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 501.225171 1000.43579 0.040011 2.0054E-05 -0.37054 -0.00018572 -0.33053 -0.00016567 501.22508688166573 54.361 0.19675 54.295 54.122 54.319 -0.066936 0.076524 0.00031793 NaN 48.346 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2107900 41593 1631 27615 28319 274;275 -0.06441213842913385 NAFTMPLHM 9 Unmodified _NAFTMPLHM_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.249267578125 2 531.24898 1060.48341 0.3501 0.00018599 0.80055 0.00042529 1.1507 0.00061129 531.2492817643686 91.135 0.47603 91.135 90.906 91.382 0 61 26 3 0 0 0 0.23158 2 50429 50326;50429 20.454 1.0146 1 7089500 41594 1062 27616 28320 48895;48896 48896 -0.04441514852055661 NAFTMPLHM 9 Unmodified _NAFTMPLHM_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2499389648438 2 531.24898 1060.48341 0.36273 0.0001927 0.44053 0.00023403 0.80326 0.00042673 531.248958162418 91.632 0.42885 91.151 90.962 91.391 -0.48092 78 27 4 0 0 0 0.23158 1 50022 50022 20.454 5.2051 1 9643500 41595 1062 27616 28320 48897 48897 -0.04441514852055661 NAFTMPLHM 9 Unmodified _NAFTMPLHM_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.24951171875 2 531.24898 1060.48341 0.30799 0.00016362 0.5542 0.00029442 0.86219 0.00045804 531.2491739463823 99.748 0.16434 93.573 93.474 93.638 -6.1757 24 10 3 0 0 0 0.23158 1 66520 66520 20.454 1.0146 1 79118000 41596 1062 27616 28320 48898 48898 -0.04441514852055661 NAFTMPLHM 9 Unmodified _NAFTMPLHM_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.24898 1060.48341 0.36273 0.0001927 0.44053 0.00023403 0.80326 0.00042673 531.248958162418 91.632 0.42885 91.151 90.962 91.391 -0.48092 0.022665 -0.00018016 NaN 20.454 78 27 4 NaN NaN NaN NaN 0 NaN NaN 0 9643500 41597 1062 27616 28320 -0.04441514852055661 NAFTMPLHM 9 Unmodified _NAFTMPLHM_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.24898 1060.48341 0.86828 0.00046127 0.53626 0.00028489 1.4045 0.00074616 531.248971222355 91.062 0.28992 91.099 90.954 91.244 0.036499 -0.029615 -7.8449E-05 NaN 20.454 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3795800 41598 1062 27616 28320 -0.04441514852055661 NAFWTIPVY 9 Unmodified _NAFWTIPVY_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;SURF4|p.F219I|1|0.47|ENSG00000148248|chr9:133363648-133363648|A/T|missense_variant ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.786865234375 2 555.784567 1109.55458 2.4413 0.0013568 -1.0939 -0.00060795 1.3475 0.0007489 555.7838748309993 95.958 0.44225 95.962 95.79 96.232 0.004158 24 15 2 0 0 0 0.031062 2 53281 53281;53380 54.774 36.639 1 8332100 41599 5909 27617 28321 48899;48900 48899 0.004186444486094842 NAFYEHAQTY 10 Unmodified _NAFYEHAQTY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2723388671875 2 622.272552 1242.53055 -0.4241 -0.00026391 0.55803 0.00034725 0.13392 8.3338E-05 622.273158369175 34.235 0.20551 34.235 34.14 34.345 0 28 10 4 0 0 0 9.8034E-06 1 18005 18005 128.58 93.647 1 13917000 41600 7776;16369 27618 28322 48901 48901 -0.08101240775704355 NAFYEHAQTY 10 Unmodified _NAFYEHAQTY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.272216796875 2 622.272552 1242.53055 -0.28948 -0.00018014 -0.20966 -0.00013047 -0.49914 -0.0003106 622.2723948101768 34.417 0.16124 34.225 34.13 34.291 -0.19131 15 6 3 0 0 0 0.0015532 1 17978 17978 110.79 54.616 1 4096200 41601 7776;16369 27618 28322 48902 48902 -0.08101240775704355 NAFYEHAQTY 10 Unmodified _NAFYEHAQTY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2730712890625 2 622.272552 1242.53055 0.33946 0.00021124 0.76299 0.00047479 1.1024 0.00068602 622.2731249799702 38.868 0.33062 34.417 34.251 34.582 -4.4509 48 20 3 0 0 0 3.9043E-08 2 22931 22931;23065 147.24 108.63 1 20165000 41602 7776;16369 27618 28322 48903;48904 48903 -0.08101240775704355 NAFYEHAQTYY 11 Unmodified _NAFYEHAQTYY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MSMS AL20221201_MKP_PDAC_01 4 703.8043823242188 2 703.804217 1405.59388 NaN NaN NaN NaN NaN NaN NaN 48.793 1 43.397 42.897 43.897 -5.3961 0 0 0 0.030046 1 30421 30421 89.609 24.135 1 41603 7776;16369 27619 28323 48905 48905 -0.09269300058463159 NAGGVTVSY 9 Unmodified _NAGGVTVSY_ 0 0 0 ENSG00000148672|ENST00000277865|GLUD1;nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000182890|ENST00000328078|GLUD2 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.4208984375 1 867.420673 866.413397 0.23781 0.00020628 0.68584 0.00059492 0.92365 0.0008012 867.4207707709102 36.051 0.13774 36.051 35.937 36.074 0 11 6 2 0 0 0 0.015445 1 19070 19070 68.081 28.123 1 2654400 41604 5952 27620 28324 48906 48906 -0.025153539246616674 NAGGVTVSY 9 Unmodified _NAGGVTVSY_ 0 0 0 ENSG00000148672|ENST00000277865|GLUD1;nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000182890|ENST00000328078|GLUD2 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.420654296875 1 867.420673 866.413397 0.57681 0.00050034 -0.38569 -0.00033455 0.19113 0.00016579 867.4202525617055 42.071 0.327 37.386 37.217 37.544 -4.6846 29 20 2 0 0 0 0.011968 2 25306 25306;25460 74.929 28.908 1 10218000 41605 5952 27620 28324 48907;48908 48907 -0.025153539246616674 NAGGVTVSY 9 Unmodified _NAGGVTVSY_ 0 0 0 ENSG00000148672|ENST00000277865|GLUD1;nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1;ENSG00000182890|ENST00000328078|GLUD2 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 MSMS AL20221201_MKP_PDAC_01 4 434.2140502929688 2 434.213975 866.413397 NaN NaN NaN NaN NaN NaN NaN 42.132 1 37.447 36.947 37.947 -4.6846 0 0 0 0.17247 1 25408 25408 34.102 13.649 1 41606 5952 27620 28324 48909 48909 -0.025153539246616674 NAGKTTILY 9 Unmodified _NAGKTTILY_ 0 0 0 ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant;ENSG00000165997|ENST00000377275|ARL5B;ENSG00000162980|ENST00000295087|ARL5A ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7737426757812 2 490.7742 979.533846 -0.1406 -6.9002E-05 -0.76804 -0.00037693 -0.90864 -0.00044594 490.77396433651865 35.425 0.21429 35.425 35.36 35.574 0 15 10 2 0 0 0 0.036857 1 18771 18771 51.63 21.405 1 4495100 41607 38 27621 28325 48910 48910 0.04326054068951635 NAGKTTILY 9 Unmodified _NAGKTTILY_ 0 0 0 ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant;ENSG00000165997|ENST00000377275|ARL5B;ENSG00000162980|ENST00000295087|ARL5A ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 490.7742 979.533846 0.65796 0.00032291 0.81809 0.0004015 1.4761 0.00072441 490.77487282360255 39.605 0.33004 35.154 34.98 35.31 -4.4509 -0.13531 0.00065536 NaN 51.63 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 13960000 41608 38 27621 28325 0.04326054068951635 NAGRGLVRL 9 Unmodified _NAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2930297851562 2 478.293425 954.572297 0.19213 9.1893E-05 -0.67963 -0.00032506 -0.48751 -0.00023317 478.29302103744067 38.746 0.26169 38.758 38.618 38.88 0.011456 19 12 2 0 0 0 0.070838 1 20653 20653 39.957 1.8061 1 3174200 41609 1880 27622 28326 48911 48911 0.09319404494124228 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2533569335938 2 533.253631 1064.49271 0.90844 0.00048443 -1.0293 -0.00054886 -0.12082 -6.4428E-05 533.2529101484266 54.682 0.2845 54.682 54.505 54.79 0 26 11 3 0 0 0 0.028475 1 30328 30328 56.177 29.293 1 7242600 41610 9916 27623 28327 48912 48912 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2537841796875 2 533.253631 1064.49271 0.27495 0.00014662 0.33984 0.00018122 0.61479 0.00032784 533.2538001153271 55.239 0.41666 54.761 54.548 54.964 -0.47798 52 19 4 0 0 0 0.009483 2 29898 29898;29999 81.89 49.585 1 21770000 41611 9916 27623 28327 48913;48914 48913 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7880859375 2 533.253631 1064.49271 0.38937 0.00020763 0.39387 0.00021003 0.78324 0.00041767 533.2536595620298 54.916 0.1545 54.847 54.724 54.878 -0.068737 12 7 2 0 0 0 0.19111 1 29852 29852 16.149 11.82 1 1389700 41612 9916 27623 28327 48915 48915 -0.036957069705295 NAHEFITSF 9 Unmodified _NAHEFITSF_ 0 0 0 ENST00000482899.1_1_7:150737654-150742433:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8 ENST00000482899.1_1_7:150737654-150742433:+|nuORF ENST00000482899.1_1_7:150737654-150742433:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2543334960938 2 533.253631 1064.49271 1.0728 0.00057207 -0.55716 -0.00029711 0.51563 0.00027496 533.2535997751531 60.686 0.7421 54.538 54.067 54.809 -6.1478 75 39 3 0 0 0 0.07087 1 39027 39027 39.95 9.3132 1 74142000 41613 9916 27623 28327 48916 48916 -0.036957069705295 NAHNLALVF 9 Unmodified _NAHNLALVF_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7746887207031 2 499.774534 997.534515 0.26697 0.00013343 0.10157 5.0763E-05 0.36854 0.00018419 499.77421857458677 63.833 0.66176 63.348 62.993 63.654 -0.48512 92 33 4 0 0 0 0.042911 2 34774 34774;34873 48.346 19.859 1 46038000 41614 682 27624 28328 48917;48918 48917 0.035648935086555866 NAHNLALVF 9 Unmodified _NAHNLALVF_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7744140625 2 499.774534 997.534515 0.60334 0.00030154 0.14404 7.1989E-05 0.74739 0.00037352 499.7743541413819 63.416 0.41438 63.395 63.165 63.579 -0.021614 43 20 3 0 0 0 0.016184 1 34684 34684 67.344 30.878 1 10793000 41615 682 27624 28328 48919 48919 0.035648935086555866 NAHNLALVF 9 Unmodified _NAHNLALVF_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MSMS AL20221201_MKP_PDAC_01 4 499.7741088867188 2 499.774534 997.534515 NaN NaN NaN NaN NaN NaN NaN 68.445 1 62.27 61.77 62.77 -6.1757 0 0 0 0.12337 1 44670 44670 39.957 13.616 1 41616 682 27624 28328 48920 48920 0.035648935086555866 NAHNLALVF 9 Unmodified _NAHNLALVF_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MSMS AL20221201_MKP_PDAC_01 4 499.7720642089844 2 499.774534 997.534515 NaN NaN NaN NaN NaN NaN NaN 68.629 1 62.453 61.953 62.953 -6.1757 0 0 0 0.23581 1 44802 44802 28.487 9.0478 1 41617 682 27624 28328 48921 48921 0.035648935086555866 NAHNQIAIY 9 Unmodified _NAHNQIAIY_ 0 0 0 nc|ENSG00000033170|Q9BYC5-4|FUT8;nc|ENSG00000033170|Q9BYC5-3|FUT8;ENSG00000033170|ENST00000673929|FUT8 nc|ENSG00000033170|Q9BYC5-4|FUT8 nc|ENSG00000033170|Q9BYC5-4|FUT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.26708984375 2 522.267073 1042.51959 0.78778 0.00041143 -1.1032 -0.00057619 -0.31547 -0.00016476 522.2669993667514 36.32 0.19974 36.32 36.249 36.448 0 12 9 2 0 0 0 0.10734 1 19280 19280 32.305 2.0807 1 2535900 41618 600 27625 28329 48922 48922 3.401640651645721E-05 NAHSQQMDDLF 11 Unmodified _NAHSQQMDDLF_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;nc|ENSG00000186260|Q9ULH7-4|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.277099609375 2 653.280051 1304.54555 NaN NaN NaN NaN NaN NaN NaN 69.542 1 69.542 69.042 70.042 0 0 0 0 0.94184 1 38744 38744 1.1933 0 1 41619 9464 27626 28330 48923 48923 -0.09454116970005089 NAHTDVCSL 9 Unmodified _NAHTDVCSL_ 0 0 0 REV__nc|ENSG00000204700|O76002|OR2J2 REV__nc|ENSG00000204700|O76002|OR2J2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.217041015625 2 480.216192 958.41783 NaN NaN NaN NaN NaN NaN NaN 57.093 1 57.093 56.593 57.593 0 0 0 0 0.6032 1 31766 31766 12.532 2.3482 1 + 41620 24196 27627 28331 48924 48924 -0.06304212773397921 NAIANQLRY 9 Unmodified _NAIANQLRY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 531.7882080078125 2 531.788173 1061.56179 NaN NaN NaN NaN NaN NaN NaN 43.951 1 39.186 38.686 39.686 -4.7648 0 0 0 0.097684 1 26764 26764 56.177 31.503 1 41621 3829 27628 28332 48925 48925 0.03347377049021816 NAIDKLFVLF 10 Unmodified _NAIDKLFVLF_ 0 0 0 ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 ENST00000530119.5_1_11:747481-760254:+|nuORF ENST00000530119.5_1_11:747481-760254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3426513671875 2 590.342249 1178.66995 3.0458 0.0017981 -2.6696 -0.001576 0.37622 0.0002221 590.3405935473604 99.717 0.11031 99.681 99.613 99.723 -0.036301 6 3 2 0 0 0 0.42143 1 55401 55401 20.415 4.5674 1 30535000 41622 8660 27629 28333 48926 48926 0.08775748579614628 NAIDKLFVLF 10 Unmodified _NAIDKLFVLF_ 0 0 0 ENST00000530119.5_1_11:747481-760254:+|nuORF;ENST00000533796.1_1_11:755745-760254:+|nuORF;nc|ENSG00000177156|P37837-2|TALDO1;ENSG00000177156|ENST00000319006|TALDO1 ENST00000530119.5_1_11:747481-760254:+|nuORF ENST00000530119.5_1_11:747481-760254:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8453979492188 2 590.342249 1178.66995 1.0635 0.00062783 0.63046 0.00037219 1.694 0.001 590.3423646313322 101.17 0.092445 94.997 94.939 95.032 -6.1757 8 5 2 0 0 0 0.020109 1 67830 67830 75.571 44.934 1 38891000 41623 8660 27629 28333 48927 48927 0.08775748579614628 NAIEAVDEF 9 Unmodified _NAIEAVDEF_ 0 0 0 ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4;ENST00000465242.5_1_2:75186200-75196546:+|nuORF ENST00000485527.5_1_2:75185926-75187326:+|nuORF ENST00000485527.5_1_2:75185926-75187326:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2375793457031 2 504.237647 1006.46074 0.62911 0.00031722 1.0901 0.00054969 1.7192 0.00086691 504.23780028049987 58.148 0.39537 58.148 57.944 58.34 0 44 15 4 0 0 0 0.08691 1 32360 32360 36.127 14.38 1 10925000 41624 3113 27630 28334 48928 48928 -0.042231194443274944 NAIEAVDEF 9 Unmodified _NAIEAVDEF_ 0 0 0 ENST00000485527.5_1_2:75185926-75187326:+|nuORF;ENST00000233699.8_1_2:75185926-75196546:+|nuORF;ENST00000459636.5_1_2:75185926-75188259:+|nuORF;ENSG00000115350|ENST00000483063|POLE4;ENST00000465242.5_1_2:75186200-75196546:+|nuORF ENST00000485527.5_1_2:75185926-75187326:+|nuORF ENST00000485527.5_1_2:75185926-75187326:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.6124572753906 2 504.237647 1006.46074 0.69453 0.00035021 1.2316 0.00062101 1.9261 0.00097122 504.23802111840934 66.322 0.40339 60.146 59.965 60.368 -6.1757 53 22 3 0 0 0 0.17331 1 43087 43087 22.736 5.794 1 14615000 41625 3113 27630 28334 48929 48929 -0.042231194443274944 NAIEDTIFY 9 Unmodified _NAIEDTIFY_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 ENSG00000074319|ENST00000251968|TSG101 ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2611694335938 2 543.261122 1084.50769 -0.020943 -1.1378E-05 0.21732 0.00011806 0.19638 0.00010668 543.2612032230123 71.742 0.65295 71.742 71.442 72.095 0 97 29 5 0 0 0 0.03568 3 39949 39849;39949;40050 52.268 36.421 1 65417000 41626 1123 27631 28335 48930;48931;48932 48931 -0.03118259893199138 NAIEDTIFY 9 Unmodified _NAIEDTIFY_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 ENSG00000074319|ENST00000251968|TSG101 ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2609252929688 2 543.261122 1084.50769 0.36858 0.00020024 -0.03107 -1.6879E-05 0.33751 0.00018336 543.2609682588038 72.2 0.4951 71.724 71.525 72.02 -0.4761 57 22 4 0 0 0 0.08691 2 39559 39460;39559 36.127 17.992 1 6447600 41627 1123 27631 28335 48933;48934 48934 -0.03118259893199138 NAIEDTIFY 9 Unmodified _NAIEDTIFY_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 ENSG00000074319|ENST00000251968|TSG101 ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2608032226562 2 543.261122 1084.50769 0.6941 0.00037708 -2.043 -0.0011099 -1.3489 -0.00073281 543.2600910179002 71.672 0.2721 71.711 71.557 71.829 0.039024 23 12 2 0 0 0 0.1773 1 39453 39453 25.399 11.891 1 2043500 41628 1123 27631 28335 48935 48935 -0.03118259893199138 NAIEDTIFY 9 Unmodified _NAIEDTIFY_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 ENSG00000074319|ENST00000251968|TSG101 ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.26123046875 2 543.261122 1084.50769 1.0486 0.00056969 -0.49588 -0.00026939 0.55277 0.0003003 543.2609160255333 79.836 0.66914 73.66 73.335 74.004 -6.1757 135 40 4 0 0 0 0.05447 3 52191 52191;52321;52453 43.858 23.405 1 178470000 41629 1123 27631 28335 48936;48937;48938 48936 -0.03118259893199138 NAIEDTIFY 9 Unmodified _NAIEDTIFY_ 0 0 0 ENSG00000074319|ENST00000251968|TSG101;ENST00000540555.1_1_11:18503050-18505548:-|nuORF;nc|ENSG00000074319|Q99816-2|TSG101 ENSG00000074319|ENST00000251968|TSG101 ENSG00000074319|ENST00000251968|TSG101 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1085.520141601562 1 1085.51497 1084.50769 0.99936 0.0010848 0.41894 0.00045476 1.4183 0.0015396 1085.5155150453475 79.808 0.50329 73.632 73.404 73.908 -6.1757 50 30 2 0 0 0 0.0082475 1 52197 52197 92.653 41.024 1 30422000 41630 1123 27631 28335 48939 48939 -0.03118259893199138 NAIEEVNLAY 10 Unmodified _NAIEEVNLAY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2843627929688 2 568.285128 1134.5557 0.64639 0.00036733 -1.291 -0.00073365 -0.6446 -0.00036632 568.2838357413672 59.91 0.20685 59.91 59.839 60.046 0 15 9 2 0 0 0 0.14923 1 33401 33401 39.95 27.709 1 2367300 41631 9907 27632 28336 48940 48940 -0.00619185973164349 NAIEFMETF 9 Unmodified _NAIEFMETF_ 0 0 0 ENSG00000165929|ENST00000435962|TC2N ENSG00000165929|ENST00000435962|TC2N ENSG00000165929|ENST00000435962|TC2N MSMS AL20221201_MKP_PDAC_01 4 551.2498168945312 2 551.2497 1100.48485 NaN NaN NaN NaN NaN NaN NaN 96.25 1 90.075 89.575 90.575 -6.1757 0 0 0 0.14 1 63781 63781 37.974 17.52 1 41632 7409 27633 28337 48941 48941 -0.06137602282319676 NAIFPNGAAY 10 Unmodified _NAIFPNGAAY_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2559814453125 2 519.256174 1036.49779 0.25812 0.00013403 -0.45097 -0.00023417 -0.19285 -0.00010014 519.2557988370559 57.972 0.24834 57.482 57.35 57.598 -0.48974 27 11 3 0 0 0 0.24625 1 31494 31494 30.637 15.798 1 2095600 41633 3715 27634 28338 48942 48942 -0.01899403107904618 NAIGPLVAL 9 Unmodified _NAIGPLVAL_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2;ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 867.530517578125 1 867.52983 866.522553 0.1121 9.7253E-05 1.0317 0.00089505 1.1438 0.0009923 867.5306721959091 81.85 0.41843 81.355 81.139 81.557 -0.4952 35 15 3 0 0 0 0.010877 2 44857 44761;44857 77.984 17.595 1 2210200 41634 7781;5587 27635 28339 48943;48944 48944 0.08395276765452309 NAIGPLVAL 9 Unmodified _NAIGPLVAL_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2;ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2690734863281 2 434.268553 866.522553 0.67433 0.00029284 0.86074 0.00037379 1.5351 0.00066663 434.26920922251776 81.839 0.28781 81.344 81.21 81.498 -0.4952 17 10 2 0 0 0 0.2001 1 44828 44828 23.148 6.2061 1 378270 41635 7781;5587 27635 28339 48945 48945 0.08395276765452309 NAIGPLVAL 9 Unmodified _NAIGPLVAL_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2;ENST00000490674.1_1_2:113416785-113418150:+|nuORF;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2;ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.52978515625 1 867.52983 866.522553 0.8692 0.00075406 0.5509 0.00047792 1.4201 0.001232 867.5305802022946 88.862 0.49427 82.687 82.407 82.901 -6.1757 43 27 2 0 0 0 0.0090851 2 58673 58553;58673 85.357 28.815 1 9625700 41636 7781;5587 27635 28339 48946;48947 48947 0.08395276765452309 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.3010864257812 2 514.300384 1026.58622 0.25591 0.00013161 0.11997 6.17E-05 0.37588 0.00019331 514.3002225585597 65.928 0.20578 65.928 65.824 66.03 0 15 10 2 0 0 0 0.43463 1 36779 36779 10.824 2.2306 1 1131900 41637 2701 27636 28340 48948 48948 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.3004760742188 2 514.300384 1026.58622 0.055527 2.8558E-05 -0.11361 -5.8431E-05 -0.058085 -2.9873E-05 514.3002799615388 66.24 0.54716 65.756 65.563 66.11 -0.48323 85 28 4 0 0 0 0.012148 2 36107 36107;36208 74.423 31.455 1 67219000 41638 2701 27636 28340 48949;48950 48949 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.30078125 2 514.300384 1026.58622 1.0495 0.00053976 -0.6878 -0.00035373 0.3617 0.00018602 514.2999650347647 65.786 0.61217 65.796 65.571 66.183 0.0095596 96 30 5 0 0 0 0.012148 2 35993 35993;36096 74.423 31.455 1 154420000 41639 2701 27636 28340 48951;48952 48951 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3009643554688 2 514.300384 1026.58622 0.86801 0.00044642 -0.59305 -0.000305 0.27497 0.00014142 514.3002992003699 70.408 0.5069 64.232 64.007 64.514 -6.1757 54 27 3 0 0 0 0.019303 1 45965 45965 64.236 17.315 1 51486000 41640 2701 27636 28340 48953 48953 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3004150390625 2 514.300384 1026.58622 0.65624 0.0003375 -0.22125 -0.00011379 0.43499 0.00022371 514.3002476562006 80.638 1.0046 74.462 73.727 74.732 -6.1757 79 57 2 0 0 0 0.031062 3 52700 52700;52833;52963 54.774 11.806 1 28663000 41641 2701 27636 28340 48954;48955;48956 48954 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3019409179688 2 514.300384 1026.58622 0.61597 0.0003168 -0.72707 -0.00037393 -0.1111 -5.7138E-05 514.2995709543411 84.291 1.1587 78.115 77.345 78.503 -6.1757 142 63 3 0 0 0 0.031062 5 55252 55007;55129;55252;55388;55644 54.774 11.88 1 49445000 41642 2701 27636 28340 48957;48958;48959;48960;48961 48959 0.073986372025729 NAIHAILLY 9 Unmodified _NAIHAILLY_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.300384 1026.58622 0.25591 0.00013161 0.11997 6.17E-05 0.37588 0.00019331 514.3002225585597 65.928 0.20578 65.928 65.824 66.03 0 0.1011 0.00054403 NaN 74.423 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1131900 41643 2701 27636 28340 0.073986372025729 NAIKESYDY 9 Unmodified _NAIKESYDY_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7562866210938 2 551.756204 1101.49785 -0.35925 -0.00019822 -0.33477 -0.00018471 -0.69402 -0.00038293 551.7560263617931 28.472 0.23176 28.472 28.368 28.6 0 31 13 3 0 0 0 0.0086209 1 14694 14694 89.401 65.38 1 10779000 41644 1122 27637 28341 48962 48962 -0.0488344789855546 NAIKESYDY 9 Unmodified _NAIKESYDY_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7557983398438 2 551.756204 1101.49785 1.0568 0.00058312 -0.24312 -0.00013414 0.81373 0.00044898 551.7560449113613 32.272 0.35146 28.416 28.249 28.601 -3.8562 40 20 3 0 0 0 0.0013034 2 18337 18337;18468 137.42 91.403 1 24836000 41645 1122 27637 28341 48963;48964 48963 -0.0488344789855546 NAIKLEEKGVY 11 Unmodified _NAIKLEEKGVY_ 0 0 0 ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.9019470214844 3 421.902961 1262.68705 -0.53491 -0.00022568 -0.060571 -2.5555E-05 -0.59548 -0.00025124 421.9027130898296 33.65 0.20072 33.65 33.565 33.765 0 36 13 4 0 0 0 0.13384 1 17646 17646 38.559 28.244 1 10287000 41646 6583 27638 28342 48965 48965 0.06621624394756509 NAIKLEEKGVY 11 Unmodified _NAIKLEEKGVY_ 0 0 0 ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.9031372070312 3 421.902961 1262.68705 1.3787 0.00058168 -0.3368 -0.0001421 1.0419 0.00043958 421.90267915281953 37.924 0.3531 33.555 33.364 33.718 -4.3689 45 20 3 0 0 0 0.55668 1 22245 22245 13.535 9.689 1 18290000 41647 6583 27638 28342 48966 48966 0.06621624394756509 NAIKLEEKGVY 11 Unmodified _NAIKLEEKGVY_ 0 0 0 ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3521728515625 2 632.350803 1262.68705 0.93642 0.00059214 0.65548 0.00041449 1.5919 0.0010066 632.3510220315122 37.898 0.21674 33.529 33.419 33.636 -4.3689 21 12 2 0 0 0 0.081606 1 22250 22250 52.193 35.08 1 4885600 41648 6583 27638 28342 48967 48967 0.06621624394756509 NAIKLEEKGVY 11 Unmodified _NAIKLEEKGVY_ 0 0 0 ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 632.350803 1262.68705 -0.44559 -0.00028177 -1.0757 -0.00068024 -1.5213 -0.00096201 632.3501199186481 33.627 0.14743 33.627 33.6 33.747 0 0.048751 -0.0014259 NaN 52.193 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3802700 41649 6583 27638 28342 0.06621624394756509 NAILENISF 9 Unmodified _NAILENISF_ 0 0 0 nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR nc|ENSG00000001626|P13569-2|CFTR nc|ENSG00000001626|P13569-2|CFTR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7735290527344 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 79.951 1 79.462 78.962 79.962 -0.48932 0 0 0 0.6306 1 43792 43792 11.64 0.81637 1 41650 257 27639 28343 48968 48968 0.019777502063334396 NAIQDKLSF 9 Unmodified _NAIQDKLSF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2760009765625 2 518.277106 1034.53966 0.6923 0.0003588 -1.2907 -0.00066895 -0.59842 -0.00031015 518.276354707844 49.803 0.45609 49.803 49.51 49.966 0 59 20 4 0 0 0 0.021948 1 27397 27397 61.602 3.8799 1 34454000 41651 9370 27640 28344 48969 48969 0.023771525806068894 NAIQDKLSF 9 Unmodified _NAIQDKLSF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.276611328125 2 518.277106 1034.53966 0.76436 0.00039615 -0.34784 -0.00018028 0.41652 0.00021587 518.2766628042868 50.229 0.42399 49.837 49.568 49.992 -0.3923 67 20 4 0 0 0 0.017075 2 27011 27011;27115 66.457 3.884 1 67899000 41652 9370 27640 28344 48970;48971 48970 0.023771525806068894 NAIQDKLSF 9 Unmodified _NAIQDKLSF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.277587890625 2 518.277106 1034.53966 1.2025 0.00062325 -0.98779 -0.00051195 0.21474 0.0001113 518.2762724353163 49.913 0.24387 49.864 49.703 49.947 -0.048824 27 11 3 0 0 0 0.010301 1 26949 26949 79.596 7.674 1 3946800 41653 9370 27640 28344 48972 48972 0.023771525806068894 NAIQDKLSF 9 Unmodified _NAIQDKLSF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L;nc|ENSG00000185404|Q9H930-3|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.276611328125 2 518.277106 1034.53966 0.41548 0.00021533 -0.053722 -2.7843E-05 0.36176 0.00018749 518.2769170530867 55.958 0.51047 50.037 49.766 50.277 -5.9211 77 29 3 0 0 0 0.013609 2 35689 35556;35689 70.332 7.7593 1 212150000 41654 9370 27640 28344 48973;48974 48974 0.023771525806068894 NAIRETGWAF 10 Unmodified _NAIRETGWAF_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.793212890625 2 582.793455 1163.57236 NaN NaN NaN NaN NaN NaN NaN 57.66 1 57.17 56.67 57.67 -0.48974 0 0 0 0.50479 1 31339 31339 26.021 14.526 1 41655 6096 27641 28345 48975 48975 -0.002886402965259549 NAIRETGWAF 10 Unmodified _NAIRETGWAF_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.2962036132812 2 582.793455 1163.57236 1.2064 0.00070308 -2.1611 -0.0012595 -0.95475 -0.00055642 582.7924002145709 57.194 0.24154 57.128 57.018 57.259 -0.066036 13 11 2 0 0 0 0.38225 1 31159 31159 22.658 13.275 1 1775500 41656 6096 27641 28345 48976 48976 -0.002886402965259549 NAIRETGWAF 10 Unmodified _NAIRETGWAF_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7940673828125 2 582.793455 1163.57236 1.7797 0.0010372 1.0935 0.00063726 2.8732 0.0016745 583.2956627711703 62.479 0.47934 56.303 56.156 56.636 -6.1757 41 24 2 0 0 0 0.035244 2 40464 40315;40464 65.474 27.5 1 18157000 41657 6096 27641 28345 48977;48978 48978 -0.002886402965259549 NAIRQRSL 8 Unmodified _NAIRQRSL_ 0 0 0 ENST00000556683.1_1_14:51712110-51721234:+|nuORF;ENSG00000139921|ENST00000457354|TMX1 ENST00000556683.1_1_14:51712110-51721234:+|nuORF ENST00000556683.1_1_14:51712110-51721234:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.28369140625 2 479.283057 956.551562 NaN NaN NaN NaN NaN NaN NaN 75.463 1 74.986 74.486 75.486 -0.47714 0 0 0 0.97444 1 41310 41310 5.2307 0 1 41658 5197 27642 28346 48979 48979 0.0715481411446035 NAISVTTSY 9 Unmodified _NAISVTTSY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2407531738281 2 478.24019 954.465826 0.08633 4.1286E-05 0.17776 8.5013E-05 0.26409 0.0001263 478.2401737588094 42.06 0.37209 42.06 41.846 42.218 0 55 19 4 0 0 0 0.095405 2 22680 22680;22794 34.102 18.255 1 59070000 41659 10135 27643 28347 48980;48981 48980 -0.013228155817159859 NAISVTTSY 9 Unmodified _NAISVTTSY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.4724731445312 1 955.473103 954.465826 -0.31797 -0.00030381 -0.2181 -0.00020839 -0.53607 -0.0005122 955.4728552855831 42.039 0.24187 42.039 41.901 42.143 0 29 12 3 0 0 0 0.0085164 1 22686 22686 99.799 59.842 1 18578000 41660 10135 27643 28347 48982 48982 -0.013228155817159859 NAISVTTSY 9 Unmodified _NAISVTTSY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 955.473388671875 1 955.473103 954.465826 0.72578 0.00069347 -0.11597 -0.00011081 0.60981 0.00058266 955.4728658972437 49.327 0.33873 43.931 43.745 44.083 -5.3961 35 21 2 0 0 0 0.0085164 2 30869 30744;30869 99.799 61.825 1 42686000 41661 10135 27643 28347 48983;48984 48984 -0.013228155817159859 NAISVTTSY 9 Unmodified _NAISVTTSY_ 0 0 0 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 ENSG00000198730|ENST00000361367|CTR9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2409057617188 2 478.24019 954.465826 0.9734 0.00046552 0.0095215 4.5536E-06 0.98293 0.00047007 478.24025734370355 49.343 0.42524 43.947 43.717 44.143 -5.3961 55 27 3 0 0 0 0.018301 2 30769 30769;30893 65.235 23.14 1 162420000 41662 10135 27643 28347 48985;48986 48985 -0.013228155817159859 NAITLPEEF 9 Unmodified _NAITLPEEF_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2639770507812 2 517.263665 1032.51278 0.25068 0.00012967 -0.081991 -4.2411E-05 0.16869 8.7259E-05 517.2635084895759 72.198 0.53762 72.198 71.923 72.461 0 89 23 5 0 0 0 0.022193 3 40111 40111;40212;40317 61.357 61.357 1 96871000 41663 7241;10731 27644 28348 48987;48988;48989 48987 -0.00217956030564892 NAITLPEEF 9 Unmodified _NAITLPEEF_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2633666992188 2 517.263665 1032.51278 0.55687 0.00028805 -0.30911 -0.00015989 0.24776 0.00012816 517.2633027255692 72.615 0.33798 72.139 71.98 72.318 -0.47609 38 15 3 0 0 0 0.022193 1 39727 39727 61.357 48.826 1 9687300 41664 7241;10731 27644 28348 48990 48990 -0.00217956030564892 NAITLPEEF 9 Unmodified _NAITLPEEF_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1 ENSG00000164754|ENST00000297338|RAD21 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7789306640625 2 517.263665 1032.51278 0.38483 0.00019906 -2.5523 -0.0013202 -2.1674 -0.0011211 517.2622397678999 72.105 0.28085 72.144 71.994 72.275 0.039024 16 13 2 0 0 0 0.17718 1 39706 39706 20.454 6.5476 1 4493500 41665 7241;10731 27644 28348 48991 48991 -0.00217956030564892 NAITLPEEF 9 Unmodified _NAITLPEEF_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 ENSG00000164754|ENST00000297338|RAD21;nc|ENSG00000244588|Q9H4I0-2|RAD21L1 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2631225585938 2 517.263665 1032.51278 1.0364 0.00053609 -0.2966 -0.00015342 0.73979 0.00038266 517.2635259597984 79.973 0.60269 73.797 73.55 74.152 -6.1757 116 36 4 0 0 0 0.015445 4 52324 52295;52324;52451;52581 68.081 68.081 1 269770000 41666 7241;10731 27644 28348 48992;48993;48994;48995 48993 -0.00217956030564892 NAIVAVISY 9 Unmodified _NAIVAVISY_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2752990722656 2 475.271293 948.528032 0.088937 4.2269E-05 2.8521 0.0013555 2.9411 0.0013978 475.2731206521282 70.012 0.26314 69.532 69.29 69.553 -0.47903 14 11 2 0 0 0 0.070838 1 38236 38236 39.957 19.504 1 2645300 41667 3863 27645 28349 48996 48996 0.05170955557287016 NAIVAVISY 9 Unmodified _NAIVAVISY_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MSMS AL20221201_MKP_PDAC_01 4 475.2720031738281 2 475.271293 948.528032 NaN NaN NaN NaN NaN NaN NaN 77.176 1 71 70.5 71.5 -6.1757 0 0 0 0.08978 1 50477 50477 46.021 11.919 1 41668 3863 27645 28349 48997 48997 0.05170955557287016 NAIVIHEVY 9 Unmodified _NAIVIHEVY_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2874755859375 2 529.287474 1056.5604 1.0447 0.00055296 -0.55438 -0.00029343 0.49034 0.00025953 529.2872275243426 46.254 0.39451 46.254 46.018 46.412 0 52 18 4 0 0 0 0.044011 1 25265 25265 47.749 22.758 1 33755000 41669 4457;16195 27646 28350 48998 48998 0.03437742960295509 NAIVIHEVY 9 Unmodified _NAIVIHEVY_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MSMS AL20221201_MKP_PDAC_01 4 529.288330078125 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 51.98 1 46.246 45.746 46.746 -5.7345 0 0 0 0.14 1 32771 32771 37.974 3.8716 1 41670 4457;16195 27646 28350 48999 48999 0.03437742960295509 NAIYEDGPV 9 Unmodified _NAIYEDGPV_ 0 0 0 ENST00000430365.6_1_3:11643369-11685017:-|nuORF ENST00000430365.6_1_3:11643369-11685017:-|nuORF ENST00000430365.6_1_3:11643369-11685017:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2338256835938 2 489.232364 976.450176 0.037765 1.8476E-05 -1.3993 -0.0006846 -1.3616 -0.00066612 489.23184433718876 42.058 0.24187 42.058 41.901 42.143 0 21 12 2 0 0 0 0.10734 1 22725 22725 32.305 2.4649 1 5339300 41671 13242 27647 28351 49000 49000 -0.038991020987623415 NAIYGEKTY 9 Unmodified _NAIYGEKTY_ 0 0 0 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 ENSG00000242550|ENST00000238508|SERPINB10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2758178710938 2 529.761289 1057.50803 0.89035 0.00047167 -2.4127 -0.0012782 -1.5223 -0.00080648 529.7593498165081 42.413 0.34126 37.729 37.544 37.885 -4.6846 45 22 3 0 0 0 0.18521 1 25513 25513 11.64 0.81637 1 40427000 41672 10698 27648 28352 49001 49001 -0.01842840173321747 NAKDVAVSY 9 Unmodified _NAKDVAVSY_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000196502|ENST00000314752|SULT1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.748046875 2 483.748182 965.481811 -0.31041 -0.00015016 -0.13919 -6.7334E-05 -0.4496 -0.00021749 483.74806756815684 26.333 0.20016 26.333 26.228 26.428 0 17 9 2 0 0 0 0.1685 1 13510 13510 26.268 10.119 1 2701500 41673 9829;9920 27649 28353 49002 49002 -0.0023110934480428114 NAKDVDFMY 9 Oxidation (M) _NAKDVDFM(Oxidation (M))Y_ NAKDVDFM(1)Y NAKDVDFM(68)Y 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7464599609375 2 559.744782 1117.47501 0.49143 0.00027508 0.79625 0.0004457 1.2877 0.00072077 559.7452105779668 37.169 0.45255 37.169 36.897 37.35 0 52 22 3 0 0 0 0.015445 1 19672 19672 68.081 44.932 1 4496400 41674 10766 27650 28354 49003 49003 1723 -0.07902790287675998 NAKLEAVLV 9 Unmodified _NAKLEAVLV_ 0 0 0 REV__ENST00000463678.5_1_1:110028686-110035219:+|nuORF REV__ENST00000463678.5_1_1:110028686-110035219:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7932434082031 2 478.792392 955.570232 0.76039 0.00036407 0.56673 0.00027134 1.3271 0.00063541 478.79278951736393 43.183 0.32873 38.418 38.197 38.525 -4.7648 37 22 2 0 0 0 0.039985 1 26150 26150 49.933 6.0747 1 14939000 + 41675 21674 27651 28355 49004 49004 0.09066930965650499 NAKRKRKLIVD 11 Unmodified _NAKRKRKLIVD_ 0 0 0 ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENST00000414579.2_1_X:100057007-100057235:+|nuORF ENST00000414579.2_1_X:100057007-100057235:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.4301147460938 2 670.927877 1339.8412 1.3261 0.00088971 0.91317 0.00061267 2.2393 0.0015024 671.4291799742055 104.6 0.11668 98.426 98.36 98.476 -6.1757 9 5 3 0 0 0 0.7326 1 70045 70045 1.1933 0.79263 1 11710000 41676 13013 27652 28356 49005 49005 0.18487498670788227 NAKVADVLDVL 11 Unmodified _NAKVADVLDVL_ 0 0 0 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2240600585938 3 386.223923 1155.64994 0.063781 2.4634E-05 0.89838 0.00034697 0.96216 0.00037161 386.2242474568023 20.863 0.16695 20.873 20.776 20.943 0.010551 21 8 3 0 0 0 0.66968 1 10649 10649 5.8681 0.34485 1 4635000 41677 455 27653 28357 49006 49006 0.07833952848977788 NALAVSTKY 9 Unmodified _NALAVSTKY_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7673950195312 2 483.766374 965.518196 1.0029 0.00048516 -0.50852 -0.00024601 0.49437 0.00023916 483.7664264750891 38.147 0.31898 33.778 33.597 33.916 -4.3689 27 18 2 0 0 0 0.098164 1 22482 22482 33.445 14.188 1 21521000 41678 4399 27654 28358 49007 49007 0.03405767551907957 NALDAAVLAY 10 Unmodified _NALDAAVLAY_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7720336914062 2 510.771657 1019.52876 0.43268 0.000221 0.68582 0.0003503 1.1185 0.0005713 510.77191472806123 68.622 0.48808 68.622 68.35 68.838 0 42 21 3 0 0 0 0.11824 1 38250 38250 43.772 23.319 1 1900100 41679 5770 27655 28359 49008 49008 0.01977750206322071 NALDAAVLAY 10 Unmodified _NALDAAVLAY_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MSMS AL20221201_MKP_PDAC_01 4 510.7723083496094 2 510.771657 1019.52876 NaN NaN NaN NaN NaN NaN NaN 76.536 1 70.36 69.86 70.86 -6.1757 0 0 0 0.24492 1 50064 50064 40.239 9.6027 1 41680 5770 27655 28359 49009 49009 0.01977750206322071 NALDDRISF 9 Unmodified _NALDDRISF_ 0 0 0 nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7651977539062 2 525.764363 1049.51417 0.68386 0.00035955 0.44942 0.00023629 1.1333 0.00059584 525.76477084262 53.12 0.55287 53.12 52.728 53.281 0 54 24 4 0 0 0 0.01085 1 29399 29399 78.06 39.885 1 14486000 41681 736 27656 28360 49010 49010 -0.008603219418091612 NALDDRISF 9 Unmodified _NALDDRISF_ 0 0 0 nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.76318359375 2 525.764363 1049.51417 NaN NaN NaN NaN NaN NaN NaN 53.68 1 53.228 52.728 53.728 -0.45173 0 0 0 0.090869 1 29051 29051 45.74 18.111 1 41682 736 27656 28360 49011 49011 -0.008603219418091612 NALDDRISF 9 Unmodified _NALDDRISF_ 0 0 0 nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7647094726562 2 525.764363 1049.51417 0.98755 0.00051922 -0.41894 -0.00022026 0.56861 0.00029895 525.764467139467 59.879 0.33433 53.764 53.587 53.921 -6.1147 30 19 2 0 0 0 0.018061 1 38455 38455 65.474 39.206 1 41010000 41683 736 27656 28360 49012 49012 -0.008603219418091612 NALDLNSVL 9 Unmodified _NALDLNSVL_ 0 0 0 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5194091796875 1 958.520387 957.513111 0.086812 8.3211E-05 -0.58728 -0.00056292 -0.50047 -0.00047971 958.5200868761756 75.1 0.30164 75.1 74.948 75.25 0 38 19 2 0 0 0 0.07087 2 41825 41726;41825 39.95 10.868 1 2496000 41684 2416 27657 28361 49013;49014 49014 0.032654636892857525 NALDLNSVL 9 Unmodified _NALDLNSVL_ 0 0 0 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7642211914062 2 479.763832 957.513111 0.38205 0.00018329 0.20786 9.9723E-05 0.58991 0.00028302 479.7637262774725 75.06 0.36342 75.06 74.912 75.275 0 52 23 3 0 0 0 0.018301 1 41795 41795 65.235 6.5562 1 3091600 41685 2416 27657 28361 49015 49015 0.032654636892857525 NALDLNSVL 9 Unmodified _NALDLNSVL_ 0 0 0 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 ENSG00000106305|ENST00000223029|AIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 958.5233764648438 1 958.520387 957.513111 0.60227 0.00057729 0.35335 0.0003387 0.95562 0.00091598 958.5205920212777 75.566 0.20145 75.089 75.011 75.212 -0.47714 14 9 2 0 0 0 0.14 1 41370 41370 29.082 12.139 1 735880 41686 2416 27657 28361 49016 49016 0.032654636892857525 NALELLGATF 10 Unmodified _NALELLGATF_ 0 0 0 ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7872314453125 2 524.787307 1047.56006 0.28241 0.0001482 0.24349 0.00012778 0.5259 0.00027599 524.7874065964971 95.528 0.32104 95.16 95.017 95.338 -0.36814 25 17 2 0 0 0 0.54083 1 52162 52162 21.537 7.6309 1 763440 41687 5725 27658 28362 49017 49017 0.038183232404207956 NALELLGATF 10 Unmodified _NALELLGATF_ 0 0 0 ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.7621459960938 2 524.787307 1047.56006 1.2229 0.00064176 0.032886 1.7258E-05 1.2558 0.00065902 524.7872320436271 100.33 0.11213 94.155 94.103 94.215 -6.1757 8 6 2 0 0 0 0.21193 1 67115 67115 11.495 1.4208 1 17494000 41688 5725 27658 28362 49018 49018 0.038183232404207956 NALELLGATF 10 Unmodified _NALELLGATF_ 0 0 0 ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.787307 1047.56006 2.0533 0.0010775 -0.4652 -0.00024413 1.5881 0.0008334 524.7872029255689 95.133 0.2635 95.137 95.002 95.265 0.004158 -0.011056 -0.00052249 NaN 21.537 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 712850 41689 5725 27658 28362 0.038183232404207956 NALESYAF 8 Unmodified _NALESYAF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.4254760742188 1 914.425424 913.418148 0.2363 0.00021608 -0.25581 -0.00023392 -0.019503 -1.7834E-05 914.4249886103315 59.452 0.36432 59.452 59.262 59.627 0 39 15 3 0 0 0 0.098639 2 33155 33047;33155 100.37 15.015 1 12243000 41690 10277 27659 28363 49019;49020 49020 -0.042024697819101675 NALESYAF 8 Unmodified _NALESYAF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7158508300781 2 457.71635 913.418148 0.69168 0.0003166 -0.72463 -0.00033168 -0.032946 -1.508E-05 457.71595328022306 59.414 0.36432 59.414 59.262 59.627 0 38 15 3 0 0 0 0.40035 2 33078 33078;33183 44.407 3.9584 1 11750000 41691 10277 27659 28363 49021;49022 49021 -0.042024697819101675 NALESYAF 8 Unmodified _NALESYAF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7169494628906 2 457.71635 913.418148 0.8205 0.00037556 -0.072768 -3.3307E-05 0.74773 0.00034225 457.7163494247983 67.146 0.4332 60.971 60.748 61.181 -6.1757 56 23 3 0 0 0 0.28079 2 43622 43622;43758 57.471 13.064 1 41589000 41692 10277 27659 28363 49023;49024 49023 -0.042024697819101675 NALESYAF 8 Unmodified _NALESYAF_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.4271850585938 1 914.425424 913.418148 0.3639 0.00033276 -2.0173 -0.0018447 -1.6534 -0.0015119 914.4229090761035 67.127 0.36165 60.951 60.769 61.13 -6.1757 33 19 2 0 0 0 0.084609 2 43648 43648;43778 104.8 15.372 1 23484000 41693 10277 27659 28363 49025;49026 49025 -0.042024697819101675 NALGLDQQF 9 Unmodified _NALGLDQQF_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;ENST00000480592.5_1_X:41193505-41196960:+|nuORF nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2547607421875 2 503.253631 1004.49271 0.51631 0.00025983 0.08012 4.0321E-05 0.59643 0.00030015 503.2535650842875 58.5 0.47267 58.5 58.316 58.788 0 66 19 5 0 0 0 0.047196 2 32522 32522;32628 46.021 15.384 1 26245000 41694 10528 27660 28364 49027;49028 49027 -0.009357069705288268 NALGLDQQF 9 Unmodified _NALGLDQQF_ 0 0 0 nc|ENSG00000215301|O00571-2|DDX3X;ENSG00000215301|ENST00000644876|DDX3X;ENST00000480592.5_1_X:41193505-41196960:+|nuORF nc|ENSG00000215301|O00571-2|DDX3X nc|ENSG00000215301|O00571-2|DDX3X MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2542724609375 2 503.253631 1004.49271 -0.1298 -6.5324E-05 -1.6246 -0.0008176 -1.7544 -0.00088293 503.2523908213196 59.034 0.46589 58.543 58.369 58.835 -0.49079 41 21 3 0 0 0 0.03568 1 32103 32103 52.268 23.187 1 3049900 41695 10528 27660 28364 49029 49029 -0.009357069705288268 NALGVVACY 9 Carbamidomethyl (C) _NALGVVAC(Carbamidomethyl (C))Y_ NALGVVAC(1)Y NALGVVAC(67)Y 0 1 0 ENSG00000198677|ENST00000358746|SKIC3;ENST00000507805.5_1_5:94852367-94852451:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MSMS AL20221201_MKP_PDAC_01 4 483.740234375 2 483.739302 965.464052 NaN NaN NaN NaN NaN NaN NaN 63.255 1 57.079 56.579 57.579 -6.1757 0 0 0 0.029091 1 40871 40871 67.344 33.157 1 41696 10120 27661 28365 49030 49030 917 -0.020061478713273573 NALIKNLIKAD 11 Unmodified _NALIKNLIKAD_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|80|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|80|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8683471679688 2 606.869163 1211.72377 NaN NaN NaN NaN NaN NaN NaN 103.61 1 103.56 103.06 104.06 -0.047928 0 0 0 0.94184 1 57541 57541 1.1933 0 1 + 41697 29445 27662 28366 49031 49031 0.12637921011310027 NALKAIIAM 9 Oxidation (M) _NALKAIIAM(Oxidation (M))_ NALKAIIAM(1) NALKAIIAM(52) 0 0 1 nc|ENSG00000175193|Q9H300-2|PARL;ENSG00000175193|ENST00000317096|PARL nc|ENSG00000175193|Q9H300-2|PARL nc|ENSG00000175193|Q9H300-2|PARL MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7815246582031 2 480.78097 959.547388 1.1986 0.00057627 -0.9081 -0.0004366 0.29051 0.00013967 480.78073476664946 50.085 0.30104 44.546 44.424 44.725 -5.5391 25 19 2 0 0 0 0.03568 1 31443 31443 52.268 18.166 1 10003000 41698 8491 27663 28367 49032 49032 1441 0.06599588576534643 NALKECKVKY 10 Unmodified _NALKECKVKY_ 0 0 0 REV__ENSG00000204103|ENST00000373313|MAFB REV__ENSG00000204103|ENST00000373313|MAFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3294677734375 2 598.328816 1194.64308 -0.042693 -2.5544E-05 1.1569 0.0006922 1.1142 0.00066666 598.3289249904868 72.75 0.48085 72.792 72.487 72.968 0.041725 50 22 4 0 0 0 0.65023 1 40104 40104 9.3831 1.473 1 12021000 + 41699 24139 27664 28368 49033 49033 0.053543166967756406 NALKECKVKY 10 Unmodified _NALKECKVKY_ 0 0 0 REV__ENSG00000204103|ENST00000373313|MAFB REV__ENSG00000204103|ENST00000373313|MAFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3292236328125 2 598.328816 1194.64308 -0.42599 -0.00025488 1.0993 0.00065772 0.67328 0.00040284 598.3295925801649 84.84 0.47888 78.664 78.445 78.924 -6.1757 44 27 2 0 0 0 0.65023 1 55921 55921 9.3831 1.473 1 20088000 + 41700 24139 27664 28368 49034 49034 0.053543166967756406 NALNEQRVEF 10 Unmodified _NALNEQRVEF_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.3067626953125 2 610.306926 1218.5993 0.73386 0.00044788 -0.15877 -9.69E-05 0.57509 0.00035098 610.3067762969829 42.87 0.3075 42.87 42.718 43.026 0 52 15 4 0 0 0 0.0068436 2 23205 23205;23327 107.1 55.47 1 57907000 41701 4940 27665 28369 49035;49036 49035 -0.0012557647601170174 NALNEQRVEF 10 Unmodified _NALNEQRVEF_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3085327148438 2 610.306926 1218.5993 0.87951 0.00053677 2.2054 0.001346 3.0849 0.0018827 610.3089902099279 48.35 0.49566 43.116 42.888 43.384 -5.2339 72 29 3 0 0 0 0.00039635 2 30027 30027;30153 132.13 49.605 1 75217000 41702 4940 27665 28369 49037;49038 49037 -0.0012557647601170174 NALNHTEQY 9 Unmodified _NALNHTEQY_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2510375976562 2 545.25162 1088.48869 -0.2519 -0.00013735 -0.63133 -0.00034424 -0.88323 -0.00048158 545.2513158902568 21.075 0.28583 21.075 20.916 21.202 0 133 51 4 0 0 0 0.0024112 2 10674 10575;10674 129.77 72.301 1 9148200 41703 5770 27666 28370 49039;49040 49040 -0.05201796464257313 NALNHTEQY 9 Unmodified _NALNHTEQY_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2520141601562 2 545.25162 1088.48869 0.11707 6.3834E-05 0.3654 0.00019924 0.48248 0.00026307 545.2518541326539 23.921 0.38397 21.094 20.881 21.265 -2.8273 60 22 4 0 0 0 0.00065891 2 13008 12895;13008 142.08 93.734 1 20218000 41704 5770 27666 28370 49041;49042 49042 -0.05201796464257313 NALNIYVNL 9 Unmodified _NALNIYVNL_ 0 0 0 REV__ENSG00000139324|ENST00000266712|TMTC3 REV__ENSG00000139324|ENST00000266712|TMTC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2862548828125 2 517.287474 1032.5604 NaN NaN NaN NaN NaN NaN NaN 50.295 1 49.903 49.403 50.403 -0.3923 0 0 0 0.6306 1 27082 27082 11.64 0 1 + 41705 20402 27667 28371 49043 49043 0.04541742960282136 NALPALLIY 9 Unmodified _NALPALLIY_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2988891601562 2 494.29731 986.580068 2.197 0.0010859 0.38233 0.00018898 2.5793 0.0012749 494.2975648305828 94.426 0.35284 94.44 94.266 94.618 0.014244 29 12 3 0 0 0 0.023164 1 52441 52441 60.39 22.238 1 3446800 41706 4887 27668 28372 49044 49044 0.08624118971044936 NALPALLIY 9 Unmodified _NALPALLIY_ 0 0 0 nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL nc|ENSG00000136940|Q13371-2|PDCL nc|ENSG00000136940|Q13371-2|PDCL MSMS AL20221201_MKP_PDAC_01 4 494.2974853515625 2 494.29731 986.580068 NaN NaN NaN NaN NaN NaN NaN 100.45 1 94.271 93.771 94.771 -6.1757 0 0 0 0.043758 1 67169 67169 60.39 22.238 1 41707 4887 27668 28372 49045 49045 0.08624118971044936 NALQEPSSF 9 Unmodified _NALQEPSSF_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7369079589844 2 496.737814 991.461075 -0.13466 -6.689E-05 -0.18534 -9.2065E-05 -0.32 -0.00015895 496.73775808626857 44.555 0.23296 44.555 44.397 44.629 0 17 11 2 0 0 0 0.031062 1 24219 24219 54.774 14.816 1 18013000 41708 678 27669 28373 49046 49046 -0.03499699724466154 NALQSPIEY 9 Unmodified _NALQSPIEY_ 0 0 0 nc|ENSG00000160145|O60229|KALRN;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000240771|Q86VW2-2|ARHGEF25;ENST00000459915.2_1_3:124356033-124393462:+|nuORF;ENSG00000240771|ENST00000286494|ARHGEF25;nc|ENSG00000240771|Q86VW2-3|ARHGEF25;nc|ENSG00000160145|O60229-5|KALRN;ENST00000393496.5_1_3:124223749-124393462:+|nuORF;nc|ENSG00000160145|O60229-6|KALRN;nc|ENSG00000160145|O60229-4|KALRN nc|ENSG00000160145|O60229|KALRN nc|ENSG00000160145|O60229|KALRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7615356445312 2 517.761289 1033.50803 0.37324 0.00019325 -0.80861 -0.00041867 -0.43537 -0.00022542 518.2624128659628 53.793 0.25594 53.334 53.198 53.454 -0.4584 23 12 2 0 0 0 0.23158 1 29114 29114 20.454 8.8133 1 2685400 41709 16313 27670 28374 49047 49047 -0.007388401733351202 NALTIFDGF 9 Unmodified _NALTIFDGF_ 0 0 0 REV__ENSG00000104549|ENST00000265896|SQLE REV__ENSG00000104549|ENST00000265896|SQLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2519226074219 2 499.2531 996.491647 1.3837 0.00069081 -0.21902 -0.00010935 1.1647 0.00058146 499.2526287854701 63.862 0.22357 57.687 57.579 57.802 -6.1757 17 12 2 0 0 0 0.30562 1 41368 41368 16.942 1.0951 1 7039900 + 41710 18364 27671 28375 49048 49048 -0.006739213394212129 NALVLDALM 9 Unmodified _NALVLDALM_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7665405273438 2 480.265153 958.515753 0.50485 0.00024246 0.18115 8.7002E-05 0.686 0.00032946 480.265181269704 94.788 0.31098 94.367 94.178 94.489 -0.42044 26 14 2 0 0 0 0.54444 1 51723 51723 4.756 0 1 480010 41711 1899 27672 28376 49049 49049 0.03483595822581265 NALVRQLEF 9 Unmodified _NALVRQLEF_ 0 0 0 ENST00000398764.3_1_9:116521276-116521525:-|nuORF ENST00000398764.3_1_9:116521276-116521525:-|nuORF ENST00000398764.3_1_9:116521276-116521525:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3064575195312 2 545.306198 1088.59784 0.85065 0.00046387 -0.82217 -0.00044833 0.028486 1.5534E-05 545.3057617593521 38.133 0.57419 33.764 33.456 34.03 -4.3689 102 34 4 0 0 0 0.25681 1 22584 22584 19.257 1.8143 1 198190000 41712 12856 27673 28377 49050 49050 0.057088342259021374 NAMAFCAKM 9 Carbamidomethyl (C),2 Oxidation (M) _NAM(Oxidation (M))AFC(Carbamidomethyl (C))AKM(Oxidation (M))_ NAMAFC(1)AKM NAM(1)AFCAKM(1) NAMAFC(50)AKM NAM(50)AFCAKM(50) 0 1 2 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2222900390625 2 538.222105 1074.42966 1.0334 0.00055619 0.31419 0.00016911 1.3476 0.0007253 538.2224175128447 21.693 0.38274 18.958 18.757 19.14 -2.7348 40 22 2 0 0 0 0.039985 1 11666 11666 49.933 42.023 1 2367200 41713 6861 27674 28378 49051 49051 675 1186;1187 -0.10458055346089168 NAMAFCAKM 9 Carbamidomethyl (C) _NAMAFC(Carbamidomethyl (C))AKM_ NAMAFC(1)AKM NAMAFC(48)AKM 0 1 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MSMS AL20221201_MKP_PDAC_01 4 522.2271728515625 2 522.22719 1042.43983 NaN NaN NaN NaN NaN NaN NaN 48.193 1 42.959 42.459 43.459 -5.2339 0 0 0 0.083082 1 29994 29994 47.749 7.7914 1 41714 6861 27674 28379 49052 49052 675 -0.07969447620826031 NAMDSPLLKY 10 Oxidation (M) _NAM(Oxidation (M))DSPLLKY_ NAM(1)DSPLLKY NAM(91)DSPLLKY 0 0 1 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2924194335938 2 584.289356 1166.56416 -0.31647 -0.00018491 2.28 0.0013322 1.9636 0.0011473 584.2906030093105 45.025 0.38268 45.025 44.887 45.269 0 45 19 3 0 0 0 0.0081376 1 24484 24484 91.085 64.201 1 19475000 41715 2318 27675 28380 49053 49053 400 -0.012459553281814806 NAMDVVVQF 9 Oxidation (M) _NAM(Oxidation (M))DVVVQF_ NAM(1)DVVVQF NAM(92)DVVVQF 0 0 1 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7498779296875 2 519.749867 1037.48518 0.67121 0.00034886 -1.3753 -0.00071483 -0.70412 -0.00036597 519.7493911869695 59.893 0.94485 59.893 59.4 60.345 0 152 42 6 0 0 0 0.0082661 3 33357 33247;33357;33463 92.491 64.005 1 119810000 41716 16507 27676 28381 49054;49055;49056 49055 1823 -0.03206182562439608 NAMDVVVQF 9 Oxidation (M) _NAM(Oxidation (M))DVVVQF_ NAM(1)DVVVQF NAM(50)DVVVQF 0 0 1 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7478637695312 2 519.749867 1037.48518 NaN NaN NaN NaN NaN NaN NaN 60.354 1 59.863 59.363 60.363 -0.49079 0 0 0 0.074615 1 32864 32864 49.933 31.798 1 41717 16507 27676 28381 49057 49057 1823 -0.03206182562439608 NAMDVVVQF 9 Oxidation (M) _NAM(Oxidation (M))DVVVQF_ NAM(1)DVVVQF NAM(82)DVVVQF 0 0 1 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7501831054688 2 519.749867 1037.48518 NaN NaN NaN NaN NaN NaN NaN 60.534 1 60.044 59.544 60.544 -0.48932 0 0 0 0.017438 1 32965 32965 81.89 51.665 1 41718 16507 27676 28381 49058 49058 1823 -0.03206182562439608 NAMDVVVQF 9 Oxidation (M) _NAM(Oxidation (M))DVVVQF_ NAM(1)DVVVQF NAM(65)DVVVQF 0 0 1 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7489624023438 2 519.749867 1037.48518 NaN NaN NaN NaN NaN NaN NaN 60.041 1 59.988 59.488 60.488 -0.053062 0 0 0 0.032808 1 32739 32739 65.235 35.01 1 41719 16507 27676 28381 49059 49059 1823 -0.03206182562439608 NAMDVVVQF 9 Oxidation (M) _NAM(Oxidation (M))DVVVQF_ NAM(1)DVVVQF NAM(92)DVVVQF 0 0 1 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.750244140625 2 519.749867 1037.48518 0.78107 0.00040596 -1.3261 -0.00068923 -0.54501 -0.00028327 519.7493061609508 67.541 0.67582 61.365 60.981 61.657 -6.1757 115 37 4 0 0 0 0.0082661 3 43980 43850;43980;44110 92.491 56.447 1 118480000 41720 16507 27676 28381 49060;49061;49062 49061 1823 -0.03206182562439608 NAMDVVVQF 9 Unmodified _NAMDVVVQF_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7526550292969 2 511.75241 1021.49027 0.53299 0.00027276 -0.99276 -0.00050805 -0.45977 -0.00023529 511.75210432156365 75.153 0.32301 75.199 75.108 75.431 0.045967 24 15 2 0 0 0 0.024882 1 41442 41442 58.679 40.544 1 2464300 41721 16507 27676 28382 49063 49063 -0.019618786998194082 NAMDVVVQF 9 Unmodified _NAMDVVVQF_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000477016.5_1_6:31656024-31659403:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7528076171875 2 511.75241 1021.49027 0.73872 0.00037804 -1.1131 -0.00056965 -0.37441 -0.00019161 511.7518961048238 83.187 0.55157 77.012 76.661 77.212 -6.1757 95 29 4 0 0 0 0.009483 3 54639 54508;54639;54762 81.89 51.665 1 182270000 41722 16507 27676 28382 49064;49065;49066 49065 -0.019618786998194082 NAMEDAQTL 9 Oxidation (M) _NAM(Oxidation (M))EDAQTL_ NAM(1)EDAQTL NAM(68)EDAQTL 0 0 1 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7188720703125 2 504.718764 1007.42298 -0.037257 -1.8804E-05 -0.32581 -0.00016444 -0.36307 -0.00018325 504.7186905537079 25.318 0.73741 25.318 24.916 25.654 0 148 52 4 0 0 0 0.015445 3 12975 12877;12975;13077 68.081 39.424 1 15403000 41723 9893 27677 28383 49067;49068;49069 49068 1590 -0.08043953701428563 NAMEDAQTL 9 Oxidation (M) _NAM(Oxidation (M))EDAQTL_ NAM(1)EDAQTL NAM(110)EDAQTL 0 0 1 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MSMS AL20221201_MKP_PDAC_01 4 504.7196044921875 2 504.718764 1007.42298 NaN NaN NaN NaN NaN NaN NaN 29.347 1 26.045 25.545 26.545 -3.3016 0 0 0 0.01136 1 16477 16477 107.19 44.614 1 41724 9893 27677 28383 49070 49070 1590 -0.08043953701428563 NAMEDAQTL 9 Unmodified _NAMEDAQTL_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7213745117188 2 496.721307 991.42806 0.69726 0.00034634 -0.1369 -6.7999E-05 0.56036 0.00027834 496.7212748864161 36.448 0.31964 36.448 36.29 36.61 0 34 15 3 0 0 0 0.06294 1 19341 19341 41.84 25.992 1 7075400 41725 9893 27677 28384 49071 49071 -0.06799649838819732 NAMEDAQTL 9 Unmodified _NAMEDAQTL_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7211608886719 2 496.721307 991.42806 0.83773 0.00041612 -0.10444 -5.1876E-05 0.73329 0.00036424 496.7214336807536 42.995 0.48663 38.311 38.055 38.542 -4.6846 100 31 4 0 0 0 0.009483 3 25903 25903;26042;26183 81.89 36.191 1 169330000 41726 9893 27677 28384 49072;49073;49074 49072 -0.06799649838819732 NAMEDAQTL 9 Unmodified _NAMEDAQTL_ 0 0 0 nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4 nc|ENSG00000196975|P09525|ANXA4 nc|ENSG00000196975|P09525|ANXA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.4354248046875 1 992.435337 991.42806 0.67212 0.00066703 -0.28594 -0.00028377 0.38618 0.00038326 992.4350937436833 43.035 0.37879 38.27 38.026 38.405 -4.7648 52 24 3 0 0 0 1.5911E-06 2 26101 25970;26101 160.52 85.587 1 16124000 41727 9893 27677 28384 49075;49076 49076 -0.06799649838819732 NAMLETPEL 9 Oxidation (M) _NAM(Oxidation (M))LETPEL_ NAM(1)LETPEL NAM(59)LETPEL 0 0 1 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.245361328125 2 517.247157 1032.47976 NaN NaN NaN NaN NaN NaN NaN 53.057 1 53.057 52.557 53.557 0 0 0 0 0.047623 1 29388 29388 58.679 29.597 1 41728 5248 27678 28385 49077 49077 964 -0.03517906144929839 NAMNMQETY 9 Unmodified _NAMNMQETY_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2210693359375 2 551.220617 1100.42668 1.0386 0.0005725 -0.219 -0.00012072 0.81961 0.00045178 551.2202562124932 42.714 0.32402 38.029 37.885 38.209 -4.6846 34 20 2 0 0 0 0.031062 2 25801 25801;25956 54.774 26.287 1 19944000 41729 3044 27679 28386 49078;49079 49078 -0.11951607199216596 NAMTHYWW 8 Unmodified _NAMTHYWW_ 0 0 0 REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1 REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.1589965820312 3 370.160488 1107.45964 -1.3046 -0.0004829 -1.1564 -0.00042805 -2.461 -0.00091096 370.15996783438794 32.473 0.24416 32.473 32.355 32.599 0 26 15 2 0 0 0 0.80232 1 16943 16943 3.5965 0 1 7823900 + 41730 24111 27680 28387 49080 49080 -0.089796122942289 NANACAKQY 9 Unmodified _NANACAKQY_ 0 0 0 ENST00000464102.5_1_3:45776682-45785158:+|nuORF;nc|ENSG00000211456|Q9NTJ5-2|SACM1L;ENSG00000211456|ENST00000389061|SACM1L ENST00000464102.5_1_3:45776682-45785158:+|nuORF ENST00000464102.5_1_3:45776682-45785158:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.746826171875 2 491.724184 981.433814 0.54472 0.00026785 0.70096 0.00034468 1.2457 0.00061253 491.7245992636065 44.302 0.41562 39.45 39.232 39.648 -4.852 68 29 3 0 0 0 0.20528 1 26877 26877 4.756 0.42677 1 42736000 41731 10409 27681 28388 49081 49081 -0.05764506536513636 NANAVLLEL 9 Unmodified _NANAVLLEL_ 0 0 0 ENSG00000240694|ENST00000522362|PNMA2 ENSG00000240694|ENST00000522362|PNMA2 ENSG00000240694|ENST00000522362|PNMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7749938964844 2 478.7742 955.533846 0.25964 0.00012431 1.04 0.00049795 1.2997 0.00062225 478.774346153376 79.43 0.31044 79.43 79.256 79.566 0 22 12 2 0 0 0 0.2143 2 44079 44079;44180 21.747 4.8044 1 1233100 41732 10675 27682 28389 49082;49083 49082 0.054300540689382615 NANHPDFPM 9 Oxidation (M) _NANHPDFPM(Oxidation (M))_ NANHPDFPM(1) NANHPDFPM(52) 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7221069335938 2 529.721641 1057.42873 -0.39034 -0.00020677 0.61094 0.00032363 0.2206 0.00011686 529.7219594545979 27.65 0.2536 27.65 27.508 27.761 0 29 11 3 0 0 0 0.03568 1 14223 14223 52.268 42.921 1 9630700 41733 9907 27683 28390 49084 49084 1592 -0.0976881039912314 NANHPDFPM 9 Oxidation (M) _NANHPDFPM(Oxidation (M))_ NANHPDFPM(1) NANHPDFPM(59) 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7213745117188 2 529.721641 1057.42873 -0.42171 -0.00022339 -0.37536 -0.00019884 -0.79707 -0.00042222 529.7215543279466 27.883 0.23938 27.883 27.761 28.001 0 31 11 4 0 0 0 0.024882 1 14421 14421 58.679 49.296 1 9280500 41734 9907 27683 28390 49085 49085 1592 -0.0976881039912314 NANHPDFPM 9 Unmodified _NANHPDFPM_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.724365234375 2 521.724184 1041.43381 -0.17661 -9.214E-05 -0.059133 -3.0851E-05 -0.23574 -0.00012299 521.7246766334634 41.337 0.24515 41.337 41.196 41.441 0 19 11 2 0 0 0 0.36964 1 22293 22293 13.906 0.39817 1 2641200 41735 9907 27683 28391 49086 49086 -0.08524506536514309 NANRIALDF 9 Unmodified _NANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2742309570312 2 517.274898 1032.53524 -0.50983 -0.00026372 -0.015097 -7.8095E-06 -0.52493 -0.00027153 517.2747474159186 55.576 0.36412 55.576 55.367 55.731 0 61 27 4 0 0 0 0.0082475 2 30809 30809;30918 99.799 38.441 1 26195000 41736 4363 27684 28392 49087;49088 49087 0.02027688157704688 NANRIALDF 9 Unmodified _NANRIALDF_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.272216796875 2 517.274898 1032.53524 -0.55636 -0.00028779 -1.2447 -0.00064384 -1.801 -0.00093163 517.2743533675298 56.029 0.27591 55.543 55.432 55.708 -0.48554 37 13 3 0 0 0 0.0082475 2 30389 30389;30492 92.653 36.686 1 45002000 41737 4363 27684 28392 49089;49090 49089 0.02027688157704688 NANVQTVAM 9 Unmodified _NANVQTVAM_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.234375 2 474.234384 946.454216 NaN NaN NaN NaN NaN NaN NaN 19.879 1 19.879 19.379 20.379 0 0 0 0 0.82739 1 9971 9971 4.3292 0 1 41738 9585 27685 28393 49091 49091 -0.021153358766923702 NAPAIDPCLYI 11 Unmodified _NAPAIDPCLYI_ 0 0 0 nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.8009033203125 2 595.299724 1188.5849 0.28803 0.00017146 2.0979 0.0012489 2.3859 0.0014203 595.3018134119861 55.739 0.29035 55.261 55.069 55.36 -0.47798 41 13 4 0 0 0 0.65108 1 30197 30197 8.7454 1.4562 1 3505500 41739 9320 27686 28394 49092 49092 -0.00185364948492861 NAPIEKTDF 9 Unmodified _NAPIEKTDF_ 0 0 0 ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7590942382812 2 517.761289 1033.50803 1.0862 0.00056241 -1.9885 -0.0010296 -0.90231 -0.00046718 517.7596026192383 61.25 0.56767 55.102 54.827 55.395 -6.1478 84 28 4 0 0 0 0.14 1 39339 39339 29.082 11.969 1 261020000 41740 4355 27687 28395 49093 49093 -0.007388401733351202 NAPKCGRG 8 Unmodified _NAPKCGRG_ 0 0 0 nc|ENSG00000100425|O95696|BRD1;ENSG00000100425|ENST00000404760|BRD1 nc|ENSG00000100425|O95696|BRD1 nc|ENSG00000100425|O95696|BRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3994750976562 1 802.398832 801.391556 -0.086181 -6.9151E-05 -1.291 -0.0010359 -1.3772 -0.001105 802.3975671469208 62.185 1.1591 62.185 61.641 62.8 0 85 60 2 0 0 0 0.80722 2 34511 34511;34828 2.3027 2.3027 1 4166700 41741 1824 27688 28396 49094;49095 49094 -0.017084371542068766 NAPVIWRF 8 Unmodified _NAPVIWRF_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1003.5546875 1 1002.55196 1001.54469 -0.060188 -6.0342E-05 2.428 0.0024342 2.3678 0.0023738 1003.5542791033337 23.832 0.16856 23.844 23.75 23.918 0.012396 9 7 2 0 0 0 0.80232 1 12170 12170 5.2307 2.3415 1 4933200 + 41742 21382 27689 28397 49096 49096 0.043975012338933084 NAPVSEYMNQA 11 Unmodified _NAPVSEYMNQA_ 0 0 0 ENSG00000141540|ENST00000269346|TTYH2;nc|ENSG00000141540|Q9BSA4-2|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2730102539062 2 612.271695 1222.52884 0.70152 0.00042952 0.65987 0.00040402 1.3614 0.00083354 612.2721683152092 83.23 0.36268 83.293 83.077 83.439 0.063171 43 13 4 0 0 0 0.42108 2 45997 45997;46104 20.415 11.669 1 32292000 41743 5347 27690 28398 49097;49098 49097 -0.07352617855963217 NAQAAAYEY 9 Unmodified _NAQAAAYEY_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7220153808594 2 500.722164 999.429775 -0.0080462 -4.0289E-06 -0.85222 -0.00042672 -0.86027 -0.00043075 500.72204102742757 30.922 0.26036 30.922 30.771 31.031 0 21 12 2 0 0 0 0.06187 1 16060 16060 42.095 29.563 1 2288000 41744 3561 27691 28399 49099 49099 -0.06996272758578925 NAQDQFEY 8 Unmodified _NAQDQFEY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7733154296875 2 507.711796 1013.40904 0.6594 0.00033479 1.3778 0.00069954 2.0372 0.0010343 507.71224620078897 42.989 0.19254 38.304 38.191 38.384 -4.6846 16 11 2 0 0 0 8.7369 1 26082 26082 7.2892 1.5288 1 6812700 41745 8745 27692 28400 49100 49100 -0.09712863138224748 NAQPEECKE 9 Unmodified _NAQPEECKE_ 0 0 0 REV__nc|ENSG00000113494|P16471-2|PRLR REV__nc|ENSG00000113494|P16471-2|PRLR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2247314453125 2 524.224214 1046.43387 0.67516 0.00035394 0.50772 0.00026616 1.1829 0.0006201 524.2243092181109 79.383 0.4575 78.894 78.638 79.096 -0.48932 28 19 2 0 0 0 0.5029 1 43452 43452 7.2892 2.0586 1 757440 + 41746 18870 27693 28401 49101 49101 -0.08748551327175846 NAQPEECKE 9 Unmodified _NAQPEECKE_ 0 0 0 REV__nc|ENSG00000113494|P16471-2|PRLR REV__nc|ENSG00000113494|P16471-2|PRLR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7684326171875 2 524.224214 1046.43387 0.67516 0.00035394 0.50772 0.00026616 1.1829 0.0006201 524.2243092181109 79.383 0.4575 78.894 78.638 79.096 -0.48932 28 19 2 0 0 0 0.18521 1 43543 43543 16.942 2.3606 1 757440 + 41747 18870 27693 28401 49102 49102 -0.08748551327175846 NAQRQDIAF 9 Unmodified _NAQRQDIAF_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7696533203125 2 531.76998 1061.52541 -0.28007 -0.00014893 0.055328 2.9422E-05 -0.22475 -0.00011951 531.7699816926137 34.965 0.33686 34.965 34.773 35.11 0 48 17 3 0 0 0 0.017075 1 18451 18451 66.457 37.375 1 174110000 41748 9079 27694 28402 49103 49103 -0.0028949984766768466 NAQRQDIAF 9 Unmodified _NAQRQDIAF_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7698974609375 2 531.76998 1061.52541 0.062201 3.3076E-05 -0.3121 -0.00016596 -0.2499 -0.00013289 531.7694820204355 34.821 0.26304 34.848 34.733 34.996 0.027401 21 11 3 0 0 0 0.07087 1 18382 18382 39.95 18.203 1 1769600 41749 9079 27694 28402 49104 49104 -0.0028949984766768466 NAQRQDIAF 9 Unmodified _NAQRQDIAF_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7702026367188 2 531.76998 1061.52541 0.49042 0.00026079 0.10059 5.3492E-05 0.59101 0.00031428 531.7699796598911 38.812 0.62139 34.361 34.082 34.704 -4.4509 137 39 5 0 0 0 0.012668 3 22949 22814;22949;23072 72.968 38.566 1 355200000 41750 9079 27694 28402 49105;49106;49107 49106 -0.0028949984766768466 NARIEEFVY 9 Unmodified _NARIEEFVY_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7896118164062 2 570.787838 1139.56112 0.90257 0.00051518 0.71378 0.00040742 1.6164 0.00092259 570.788135614592 57.062 0.33569 51.085 50.896 51.232 -5.9769 23 20 2 0 0 0 0.07087 1 36440 36440 39.95 7.164 1 19375000 41751 1681 27695 28403 49108 49108 -0.003074623906513807 NARIEEFVY 9 Unmodified _NARIEEFVY_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MSMS AL20221201_MKP_PDAC_01 4 570.7885131835938 2 570.787838 1139.56112 NaN NaN NaN NaN NaN NaN NaN 57.213 1 51.185 50.685 51.685 -6.0275 0 0 0 0.3031 1 36583 36583 24.991 4.5764 1 41752 1681 27695 28403 49109 49109 -0.003074623906513807 NARIEEFVY 9 Unmodified _NARIEEFVY_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.787838 1139.56112 0.33811 0.00019299 -1.1704 -0.00066803 -0.83226 -0.00047504 570.7874026827548 51.805 0.20757 51.372 51.305 51.512 -0.43367 0.14341 -0.0011014 NaN 39.95 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3230700 41753 1681 27695 28403 -0.003074623906513807 NARNQNNYHCH 11 Unmodified _NARNQNNYHCH_ 0 0 0 ENSG00000204386|ENST00000375631|NEU1 ENSG00000204386|ENST00000375631|NEU1 ENSG00000204386|ENST00000375631|NEU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.531494140625 3 457.530414 1369.56941 0.099454 4.5503E-05 2.4403 0.0011165 2.5398 0.001162 457.5316053867197 22.539 0.23049 22.539 22.423 22.653 0 25 10 3 0 0 0 0.73237 1 11457 11457 1.2148 0.51716 1 1491300 41754 10276 27696 28404 49110 49110 -0.10058838692998506 NARPLIKLH 9 Unmodified _NARPLIKLH_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1914672851562 3 354.557459 1060.65055 -0.0066117 -2.3442E-06 0.8738 0.00030981 0.86719 0.00030747 354.5578480438734 19.455 0.1688 19.463 19.36 19.529 0.0078506 25 10 3 0 0 0 0.61381 1 9852 9852 0.23584 0.23584 1 3555100 41755 998 27697 28405 49111 49111 0.12264837079374047 NARSSRDFEYY 11 Unmodified _NARSSRDFEYY_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000588465.5_1_19:10713206-10745972:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.8809509277344 3 469.881107 1406.62149 -0.019939 -9.3688E-06 0.056496 2.6546E-05 0.036557 1.7177E-05 469.8810555854135 29.394 0.18534 29.394 29.285 29.47 0 22 8 4 0 0 0 0.44612 1 15230 15230 19.144 15.027 1 2560100 41756 4132 27698 28406 49112 49112 -0.06555396798216861 NASEAEIFY 9 Unmodified _NASEAEIFY_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2376098632812 2 522.237647 1042.46074 -0.34419 -0.00017975 0.74097 0.00038696 0.39678 0.00020721 522.2378375828463 55.42 0.35081 55.42 55.241 55.592 0 49 15 4 0 0 0 0.024882 2 30730 30730;30836 58.679 26.373 1 16785000 41757 9250 27699 28407 49113;49114 49113 -0.05879119444330172 NASEAEIFY 9 Unmodified _NASEAEIFY_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.2625122070312 2 522.237647 1042.46074 0.85906 0.00044863 4.0954 0.0021388 4.9544 0.0025874 522.2377011380173 63.16 0.49338 56.984 56.719 57.213 -6.1757 59 26 3 0 0 0 0.15672 1 40921 40921 26.884 21.123 1 28407000 41758 9250 27699 28407 49115 49115 -0.05879119444330172 NASEDEIKKA 10 Unmodified _NASEDEIKKA_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7805786132812 2 552.78021 1103.54587 -0.073007 -4.0357E-05 0.25152 0.00013904 0.17852 9.868E-05 552.7802845423188 25.268 0.19798 25.268 25.168 25.366 0 22 9 4 0 0 0 0.46077 1 12934 12934 18.373 0 1 1489900 41759 7736 27700 28408 49116 49116 -0.0017637397850194247 NASEDRLEL 9 Unmodified _NASEDRLEL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7586669921875 2 523.759278 1045.504 0.85131 0.00044588 -1.8877 -0.00098872 -1.0364 -0.00054284 523.7585000430058 38.752 0.25727 38.752 38.577 38.834 0 24 11 3 0 0 0 0.2546 1 20751 20751 19.362 0.98885 1 3322700 41760 8482 27701 28409 49117 49117 -0.01692929667046883 NASEVPMVL 9 Oxidation (M) _NASEVPM(Oxidation (M))VL_ NASEVPM(1)VL NASEVPM(72)VL 0 0 1 ENST00000490839.1_1_7:150814483-150814980:+|nuORF;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3 ENST00000490839.1_1_7:150814483-150814980:+|nuORF ENST00000490839.1_1_7:150814483-150814980:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2445678710938 2 488.244418 974.474282 0.75733 0.00036976 0.30862 0.00015068 1.066 0.00052044 488.2447080112177 54.131 0.49928 54.131 53.899 54.398 0 40 22 3 0 0 0 0.013041 1 30005 30005 71.922 18.347 1 4923500 41761 4522 27702 28410 49118 49118 823 -0.013975849367398041 NASEVPMVL 9 Oxidation (M) _NASEVPM(Oxidation (M))VL_ NASEVPM(1)VL NASEVPM(50)VL 0 0 1 ENST00000490839.1_1_7:150814483-150814980:+|nuORF;nc|ENSG00000133612|Q96P47-3|AGAP3;nc|ENSG00000133612|Q96P47-6|AGAP3;nc|ENSG00000133612|Q96P47|AGAP3;nc|ENSG00000133612|Q96P47-2|AGAP3;ENSG00000133612|ENST00000397238|AGAP3 ENST00000490839.1_1_7:150814483-150814980:+|nuORF ENST00000490839.1_1_7:150814483-150814980:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2445678710938 2 488.244418 974.474282 NaN NaN NaN NaN NaN NaN NaN 53.639 1 53.639 53.139 54.139 0 0 0 0 0.074615 1 29745 29745 49.933 21.446 1 41762 4522 27702 28410 49119 49119 823 -0.013975849367398041 NASKGIYAM 9 Oxidation (M) _NASKGIYAM(Oxidation (M))_ NASKGIYAM(1) NASKGIYAM(69) 0 0 1 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.737060546875 2 485.73676 969.458967 1.1709 0.00056875 -0.20078 -9.7527E-05 0.97013 0.00047123 485.73698572579735 20.4 0.48318 17.707 17.494 17.977 -2.693 46 28 2 0 0 0 0.014417 1 10843 10843 69.105 36.799 1 3745100 41763 5453 27703 28411 49120 49120 1005 -0.02698451733931506 NASKGIYAM 9 Unmodified _NASKGIYAM_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MSMS AL20221201_MKP_PDAC_01 4 477.73974609375 2 477.739302 953.464052 NaN NaN NaN NaN NaN NaN NaN 35.143 1 31.048 30.548 31.548 -4.0951 0 0 0 0.32177 1 20344 20344 24.021 4.7636 1 41764 5453 27703 28412 49121 49121 -0.014541478713226752 NASKGIYAM 9 Unmodified _NASKGIYAM_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MSMS AL20221201_MKP_PDAC_01 4 477.740234375 2 477.739302 953.464052 NaN NaN NaN NaN NaN NaN NaN 35.319 1 31.224 30.724 31.724 -4.0951 0 0 0 0.054801 1 20470 20470 55.503 26.421 1 41765 5453 27703 28412 49122 49122 -0.014541478713226752 NASNPDTAF 9 Unmodified _NASNPDTAF_ 0 0 0 ENSG00000182521|ENST00000247219|TBPL2 ENSG00000182521|ENST00000247219|TBPL2 ENSG00000182521|ENST00000247219|TBPL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7072143554688 2 468.706514 935.398475 NaN NaN NaN NaN NaN NaN NaN 59.406 1 59.406 58.906 59.906 0 0 0 0 0.32177 1 33098 33098 24.021 5.8856 1 41766 9063 27704 28413 49123 49123 -0.07180845792652235 NASPLFLHF 9 Unmodified _NASPLFLHF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.27587890625 2 523.276909 1044.53927 0.22566 0.00011808 -3.751 -0.0019628 -3.5254 -0.0018447 523.2750971368336 78.163 0.33152 78.216 78.063 78.394 0.052452 19 13 2 0 0 0 0.10925 1 43180 43180 32.117 16.27 1 2006200 41767 4799 27705 28414 49124 49124 0.01877777651429824 NASRDQVVY 9 Unmodified _NASRDQVVY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2619018554688 2 526.261988 1050.50942 0.040105 2.1106E-05 -0.27833 -0.00014648 -0.23823 -0.00012537 526.2619608536418 23.654 0.52591 23.654 23.367 23.893 0 109 26 6 0 0 0 0.062454 2 12062 11963;12062 41.956 38.176 1 34684000 41768 7636 27706 28415 49125;49126 49126 -0.01381206084556652 NASRDQVVY 9 Unmodified _NASRDQVVY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2621459960938 2 526.261988 1050.50942 NaN NaN NaN NaN NaN NaN NaN 23.779 1 23.791 23.291 24.291 0.012396 0 0 0 0.34649 1 12135 12135 22.736 6.8891 1 41769 7636 27706 28415 49127 49127 -0.01381206084556652 NASRDQVVY 9 Unmodified _NASRDQVVY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2619018554688 2 526.261988 1050.50942 NaN NaN NaN NaN NaN NaN NaN 23.555 1 23.576 23.076 24.076 0.021185 0 0 0 0.13831 1 12135 12135 38.176 12.776 1 41770 7636 27706 28415 49128 49128 -0.01381206084556652 NASRDQVVY 9 Unmodified _NASRDQVVY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2626342773438 2 526.261988 1050.50942 0.34004 0.00017895 -0.20116 -0.00010586 0.13888 7.3085E-05 526.2618575587699 26.305 0.48896 23.354 23.13 23.619 -2.9511 81 26 4 0 0 0 0.040683 2 14525 14409;14525 49.554 31.408 1 136510000 41771 7636 27706 28415 49129;49130 49130 -0.01381206084556652 NASSMIIYRSF 11 Unmodified _NASSMIIYRSF_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|160|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|160|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8234252929688 2 644.821355 1287.62816 -0.85001 -0.00054811 0.92714 0.00059784 0.077127 4.9733E-05 644.8219701103698 28.026 0.71739 28.026 27.7 28.418 0 159 39 6 0 0 0 0.47965 3 14557 14357;14557;14663 17.443 4.4002 1 1730999999.9999998 + 41772 16795 27707 28416 49131;49132;49133 49132 -0.004151751712242913 NASSMIIYRSF 11 Unmodified _NASSMIIYRSF_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|160|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|160|3|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 644.821355 1287.62816 -0.85001 -0.00054811 0.92714 0.00059784 0.077127 4.9733E-05 644.8219701103698 28.026 0.71739 28.026 27.7 28.418 0 0 0 NaN 17.443 159 39 6 NaN NaN NaN NaN 0 NaN NaN 0 1730999999.9999998 + 41773 16795 27707 28416 -0.004151751712242913 NATAATTVL 9 Unmodified _NATAATTVL_ 0 0 0 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 ENSG00000089902|ENST00000262241|RCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 861.4701538085938 1 861.467623 860.460347 0.039743 3.4237E-05 0.79957 0.00068881 0.83932 0.00072304 861.4684000249379 40.014 0.23669 40.014 39.873 40.11 0 19 11 2 0 0 0 0.039985 1 21453 21453 49.933 9.9757 1 1937500 41774 1541 27708 28417 49134 49134 0.02453505626453989 NATDNGIATL 10 Unmodified _NATDNGIATL_ 0 0 0 REV__nc|ENSG00000135439|Q99490-2|AGAP2 REV__nc|ENSG00000135439|Q99490-2|AGAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.2720947265625 2 495.248546 988.482539 1.1552 0.00057211 3.1776 0.0015737 4.3328 0.0021458 495.24974969890144 79.913 0.39271 73.737 73.5 73.893 -6.1757 33 23 2 0 0 0 0.20412 1 52485 52485 22.736 0 1 13084000 + 41775 20067 27709 28418 49135 49135 -0.012163146957504978 NATGPDLEF 9 Unmodified _NATGPDLEF_ 0 0 0 nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47 nc|ENSG00000085433|O94967-2|WDR47 nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.4405517578125 1 963.441802 962.434526 0.40762 0.00039272 -1.0489 -0.0010106 -0.64133 -0.00061788 963.4403895585853 57.703 0.33162 57.703 57.585 57.917 0 38 15 3 0 0 0 0.0088174 3 32083 32083;32084;32189 103.75 51.48 1 6441800 41776 1410 27710 28419 49136;49137;49138 49136 -0.048193886158060195 NATGPDLEF 9 Unmodified _NATGPDLEF_ 0 0 0 nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47 nc|ENSG00000085433|O94967-2|WDR47 nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2245788574219 2 482.224539 962.434526 0.52971 0.00025544 -0.77713 -0.00037475 -0.24742 -0.00011931 482.22426780207337 57.716 0.30564 57.716 57.585 57.891 0 27 14 3 0 0 0 0.06294 1 32105 32105 41.84 22.583 1 5451400 41777 1410 27710 28419 49139 49139 -0.048193886158060195 NATGVAMLF 9 Oxidation (M) _NATGVAM(Oxidation (M))LF_ NATGVAM(1)LF NATGVAM(68)LF 0 0 1 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2343444824219 2 470.233853 938.453153 0.30113 0.0001416 -0.28676 -0.00013484 0.014378 6.7609E-06 470.2339089700452 66.856 0.35349 66.372 66.216 66.569 -0.48323 38 16 3 0 0 0 0.015445 1 36496 36496 68.081 13.307 1 2710700 41778 578 27711 28420 49140 49140 84 -0.018535502456074937 NATGVAMLF 9 Oxidation (M) _NATGVAM(Oxidation (M))LF_ NATGVAM(1)LF NATGVAM(72)LF 0 0 1 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2340393066406 2 470.233853 938.453153 0.39973 0.00018797 -1.0364 -0.00048737 -0.63671 -0.0002994 470.2334582280674 67.147 0.31845 66.664 66.504 66.822 -0.48218 26 14 2 0 0 0 0.013041 1 36706 36706 71.922 17.149 1 3974700 41779 578 27711 28420 49141 49141 84 -0.018535502456074937 NATGVAMLF 9 Oxidation (M) _NATGVAM(Oxidation (M))LF_ NATGVAM(1)LF NATGVAM(72)LF 0 0 1 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2345886230469 2 470.233853 938.453153 0.94249 0.00044319 -0.034701 -1.6318E-05 0.90778 0.00042687 470.2338615475781 72.072 0.12355 65.896 65.796 65.919 -6.1757 11 6 2 0 0 0 0.013041 1 47177 47177 71.922 17.149 1 26856000 41780 578 27711 28420 49142 49142 84 -0.018535502456074937 NATGVAMLF 9 Oxidation (M) _NATGVAM(Oxidation (M))LF_ 0 0 1 nc|ENSG00000029364|Q9NUM3-2|SLC39A9;ENST00000555245.5_1_14:69865254-69925307:+|nuORF;ENSG00000029364|ENST00000336643|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 nc|ENSG00000029364|Q9NUM3-2|SLC39A9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.233853 938.453153 0.53571 0.00025191 1.2963 0.00060959 1.8321 0.0008615 470.2345421623237 66.388 0.18655 66.388 66.325 66.512 0 0.0080136 0.0012343 NaN 68.081 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 380790 41781 578 27711 28420 84 -0.018535502456074937 NATNTFLVY 9 Unmodified _NATNTFLVY_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7626342773438 2 521.763832 1041.51311 0.15134 7.8966E-05 0.66943 0.00034929 0.82078 0.00042825 521.7638875890425 66.741 0.369 66.258 66.09 66.459 -0.48323 41 17 3 0 0 0 0.019303 1 36416 36416 64.236 36.063 1 5562800 41782 1985 27712 28421 49143 49143 -0.00598536310712916 NATNTFLVY 9 Unmodified _NATNTFLVY_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 521.763832 1041.51311 0.52063 0.00027165 -0.24302 -0.0001268 0.27761 0.00014485 521.7638428071817 66.228 0.19493 66.228 66.153 66.348 0 -0.01492 -0.00066947 NaN 64.236 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1368700 41783 1985 27712 28421 -0.00598536310712916 NATPGPRSHKI 11 Unmodified _NATPGPRSHKI_ 0 0 0 REV__nc|ENSG00000104447|Q9UHF7|TRPS1 REV__nc|ENSG00000104447|Q9UHF7|TRPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5536499023438 3 393.219395 1176.63635 0.6981 0.00027451 0.6749 0.00026538 1.373 0.00053989 393.5544032665158 47.256 0.28608 46.904 46.778 47.064 -0.3526 38 13 4 0 0 0 0.631 1 25306 25306 9.7643 5.0483 1 8047400 + 41784 18359 27713 28422 49144 49144 0.0551013986041653 NATPLPVTY 9 Unmodified _NATPLPVTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.5132446289062 1 975.514573 974.507297 -0.50456 -0.0004922 -0.73201 -0.00071409 -1.2366 -0.0012063 975.5135001325752 55.859 0.35175 55.859 55.697 56.049 0 59 26 3 0 0 0 0.0032147 2 30982 30982;31086 125.53 79.508 1 30729000 41785 5669 27714 28423 49145;49146 49145 0.019023651776251427 NATPLPVTY 9 Unmodified _NATPLPVTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2629699707031 2 488.260925 974.507297 -0.41965 -0.0002049 -0.89736 -0.00043815 -1.317 -0.00064305 488.26039862433504 55.826 0.2821 55.826 55.746 56.028 0 24 17 2 0 0 0 0.12424 1 31007 31007 30.637 3.7529 1 18567000 41786 5669 27714 28423 49147 49147 0.019023651776251427 NATPLPVTY 9 Unmodified _NATPLPVTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5144653320312 1 975.514573 974.507297 -0.83511 -0.00081467 0.56623 0.00055237 -0.26888 -0.0002623 975.5144533099942 56.484 0.27122 55.998 55.823 56.095 -0.48554 39 22 2 0 0 0 0.0090524 1 30613 30613 85.642 51.24 1 9236600 41787 5669 27714 28423 49148 49148 0.019023651776251427 NATPLPVTY 9 Unmodified _NATPLPVTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2611694335938 2 488.260925 974.507297 NaN NaN NaN NaN NaN NaN NaN 56.433 1 55.948 55.448 56.448 -0.48554 0 0 0 0.13831 1 30643 30643 38.176 13.502 1 41788 5669 27714 28423 49149 49149 0.019023651776251427 NATPLPVTY 9 Unmodified _NATPLPVTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.5157470703125 1 975.514573 974.507297 0.99769 0.00097326 -0.42886 -0.00041836 0.56883 0.0005549 975.5143699068121 63.892 0.59081 57.716 57.427 58.017 -6.1757 69 31 3 0 0 0 1.3386E-11 3 41320 41189;41320;41447 179.17 120.49 1 73654000 41789 5669 27714 28423 49150;49151;49152 49151 0.019023651776251427 NAVAELMQF 9 Unmodified _NAVAELMQF_ 0 0 0 ENSG00000185000|ENST00000528718|DGAT1;ENST00000524965.5_1_8:145540848-145542370:-|nuORF;ENST00000527885.1_1_8:145540848-145541192:-|nuORF ENSG00000185000|ENST00000528718|DGAT1 ENSG00000185000|ENST00000528718|DGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7525329589844 2 511.75241 1021.49027 0.46353 0.00023721 0.064111 3.2809E-05 0.52764 0.00027002 511.7524251110666 82.328 0.24632 81.833 81.72 81.966 -0.4952 14 9 2 0 0 0 0.43463 1 45107 45107 10.824 3.5347 1 556340 41790 9314 27715 28424 49153 49153 -0.01961878699830777 NAVAGAVKY 9 Unmodified _NAVAGAVKY_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;ENST00000529863.1_1_11:47861610-47869870:-|nuORF;nc|ENSG00000030066|Q12769-2|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.7485046386719 2 446.747985 891.481417 0.82501 0.00036857 0.49205 0.00021982 1.3171 0.00058839 446.7480712927314 31.295 0.3204 27.599 27.524 27.844 -3.6958 22 17 2 0 0 0 0.024882 1 17743 17743 58.679 18.721 1 27960000 41791 583 27716 28425 49154 49154 0.03133515726005953 NAVDALIDSM 10 Oxidation (M) _NAVDALIDSM(Oxidation (M))_ NAVDALIDSM(1) NAVDALIDSM(100) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7506103515625 2 532.750064 1063.48558 0.79767 0.00042496 -0.88934 -0.00047379 -0.091671 -4.8838E-05 532.7497437966645 54.041 0.65038 54.041 53.748 54.398 0 117 29 7 0 0 0 0.0046054 3 29884 29884;29987;30104 99.755 54.056 1 112720000 41792 1266 27717 28426 49155;49156;49157 49155 213 -0.0436280763326522 NAVDALIDSM 10 Oxidation (M) _NAVDALIDSM(Oxidation (M))_ NAVDALIDSM(1) NAVDALIDSM(58) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7498779296875 2 532.750064 1063.48558 -0.027425 -1.4611E-05 -0.28054 -0.00014946 -0.30796 -0.00016407 532.7499982579354 54.67 0.3808 54.203 53.921 54.302 -0.46664 48 19 3 0 0 0 0.051223 1 29616 29616 57.722 26.454 1 5684100 41793 1266 27717 28426 49158 49158 213 -0.0436280763326522 NAVDALIDSM 10 Oxidation (M) _NAVDALIDSM(Oxidation (M))_ NAVDALIDSM(1) NAVDALIDSM(86) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7515258789062 2 532.750064 1063.48558 0.016337 8.7035E-06 1.4702 0.00078326 1.4865 0.00079196 532.7509994859546 54.284 0.37666 54.217 53.962 54.338 -0.066936 44 18 3 0 0 0 0.011118 1 29429 29429 85.642 51.24 1 3678800 41794 1266 27717 28426 49159 49159 213 -0.0436280763326522 NAVDALIDSM 10 Oxidation (M) _NAVDALIDSM(Oxidation (M))_ NAVDALIDSM(1) NAVDALIDSM(96) 0 0 1 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7509155273438 2 532.750064 1063.48558 1.7543 0.0009346 -0.65319 -0.00034798 1.1011 0.00058661 532.749793593669 62.55 0.68221 56.374 56.055 56.737 -6.1757 87 35 3 0 0 0 0.0058182 3 40358 40217;40358;40487 96.111 54.271 1 77453000 41795 1266 27717 28426 49160;49161;49162 49161 213 -0.0436280763326522 NAVDALIDSM 10 Unmodified _NAVDALIDSM_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7527465820312 2 524.752607 1047.49066 0.47346 0.00024845 -0.35754 -0.00018762 0.11592 6.083E-05 524.7525154044105 80.586 0.38572 80.586 80.393 80.779 0 54 18 4 0 0 0 0.067957 2 44772 44671;44772 53.833 27.565 1 8073600 41796 1266 27717 28427 49163;49164 49164 -0.031185037706336516 NAVDALIDSM 10 Unmodified _NAVDALIDSM_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7529296875 2 524.752607 1047.49066 0.69274 0.00036352 -1.1118 -0.0005834 -0.41902 -0.00021988 524.7522046757801 81.118 0.28271 80.625 80.487 80.77 -0.49247 31 19 2 0 0 0 0.067957 2 44405 44378;44405 53.833 21.047 1 3412100 41797 1266 27717 28427 49165;49166 49166 -0.031185037706336516 NAVDALIDSM 10 Unmodified _NAVDALIDSM_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7529907226562 2 524.752607 1047.49066 1.0278 0.00053932 -0.43249 -0.00022695 0.59527 0.00031237 524.7526053507235 90.45 1.2955 84.274 83.598 84.894 -6.1757 204 75 4 0 0 0 0.016642 6 59768 59368;59497;59635;59768;59899;60024 78.728 45.942 1 87247000 41798 1266 27717 28427 49167;49168;49169;49170;49171;49172 49170 -0.031185037706336516 NAVDALIDSM 10 Unmodified _NAVDALIDSM_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20221201_MKP_PDAC_01 4 524.7527465820312 2 524.752607 1047.49066 NaN NaN NaN NaN NaN NaN NaN 91.09 1 84.914 84.414 85.414 -6.1757 0 0 0 0.33727 1 60205 60205 34.932 17.819 1 41799 1266 27717 28427 49173 49173 -0.031185037706336516 NAVDDRGLY 9 Unmodified _NAVDDRGLY_ 0 0 0 nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A nc|ENSG00000140612|P67812-2|SEC11A nc|ENSG00000140612|P67812-2|SEC11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.74853515625 2 511.748713 1021.48287 -0.19052 -9.7498E-05 -0.53106 -0.00027177 -0.72158 -0.00036927 511.7483428999697 30.822 0.3455 30.822 30.628 30.974 0 36 16 4 0 0 0 0.18144 1 16098 16098 24.991 12.75 1 18180000 41800 5259 27718 28428 49174 49174 -0.02700894975907886 NAVDDRGLY 9 Unmodified _NAVDDRGLY_ 0 0 0 nc|ENSG00000140612|P67812-2|SEC11A;nc|ENSG00000140612|P67812-4|SEC11A;nc|ENSG00000226098|P0C7V7|SEC11B;ENSG00000140612|ENST00000268220|SEC11A;nc|ENSG00000140612|P67812-3|SEC11A nc|ENSG00000140612|P67812-2|SEC11A nc|ENSG00000140612|P67812-2|SEC11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7494506835938 2 511.748713 1021.48287 0.54228 0.00027751 -2.199 -0.0011253 -1.6567 -0.00084783 511.7470431963774 35.254 0.35771 31.159 30.991 31.349 -4.0951 41 21 2 0 0 0 0.013609 1 20388 20388 70.332 34.205 1 33915000 41801 5259 27718 28428 49175 49175 -0.02700894975907886 NAVDGSHIHTF 11 Unmodified _NAVDGSHIHTF_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26410172-26413917:+|nuORF nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8597412109375 3 399.859755 1196.55744 -0.67537 -0.00027005 0.65827 0.00026322 -0.017096 -6.8361E-06 399.8599475047262 29.953 0.20987 29.953 29.847 30.057 0 19 9 3 0 0 0 0.064513 1 15537 15537 31.636 28.049 1 3123100 41802 563 27719 28429 49176 49176 -0.0329813216455932 NAVDGSHIHTF 11 Unmodified _NAVDGSHIHTF_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26410172-26413917:+|nuORF nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.860107421875 3 399.859755 1196.55744 1.4369 0.00057456 0.6789 0.00027146 2.1158 0.00084602 399.8595471976186 33.785 0.50552 29.799 29.539 30.045 -3.9853 45 27 2 0 0 0 0.21511 2 19436 19306;19436 24.957 15.413 1 11440000 41803 563 27719 28429 49177;49178 49178 -0.0329813216455932 NAVDGSHIHTF 11 Unmodified _NAVDGSHIHTF_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26410172-26413917:+|nuORF nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MSMS AL20221201_MKP_PDAC_01 4 599.2861328125 2 599.285994 1196.55744 NaN NaN NaN NaN NaN NaN NaN 33.752 1 29.766 29.266 30.266 -3.9853 0 0 0 0.044622 1 19386 19386 63.961 41.224 1 41804 563 27719 28429 49179 49179 -0.0329813216455932 NAVDGSHIHTF 11 Unmodified _NAVDGSHIHTF_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26410172-26413917:+|nuORF nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.859755 1196.55744 0.68856 0.00027533 1.8524 0.0007407 2.541 0.001016 399.8602953709855 29.909 0.12744 29.828 29.792 29.92 -0.080429 -0.031911 0.0013776 NaN 31.636 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 665640 41805 563 27719 28429 -0.0329813216455932 NAVDVEGLY 9 Unmodified _NAVDVEGLY_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.476806640625 1 979.473103 978.465826 0.67614 0.00066226 1.0941 0.0010716 1.7702 0.0017339 979.474182146727 54.161 0.27874 54.161 54.051 54.33 0 22 12 2 0 0 0 0.047788 2 30033 30033;30141 45.7 23.953 1 4164100 41806 4399 27720 28430 49180;49181 49180 -0.024268155817026127 NAVDVEGLY 9 Unmodified _NAVDVEGLY_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2415161132812 2 490.24019 978.465826 0.76797 0.00037649 -0.18199 -8.922E-05 0.58598 0.00028727 490.24012200131057 54.209 0.36403 54.209 54.011 54.375 0 40 16 3 0 0 0 0.018301 2 30034 30034;30148 65.235 38.351 1 12123000 41807 4399 27720 28430 49182;49183 49182 -0.024268155817026127 NAVDVEGLY 9 Unmodified _NAVDVEGLY_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2408447265625 2 490.24019 978.465826 1.6371 0.00080258 0.41623 0.00020405 2.0533 0.0010066 490.24053561654034 62.53 0.36957 56.354 56.156 56.526 -6.1757 32 18 2 0 0 0 0.044011 1 40304 40304 47.749 22.349 1 23276000 41808 4399 27720 28430 49184 49184 -0.024268155817026127 NAVDYPPV 8 Unmodified _NAVDYPPV_ 0 0 0 nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 nc|ENSG00000137261|Q5VV43-4|KIAA0319 nc|ENSG00000137261|Q5VV43-4|KIAA0319 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 874.430908203125 1 874.430509 873.423233 -0.17997 -0.00015737 -0.19341 -0.00016913 -0.37339 -0.0003265 874.430374820366 91.648 0.38927 91.167 90.962 91.351 -0.48092 69 25 3 0 0 0 0.70294 1 50023 50023 16.942 3.4344 1 7074900 41809 4917 27721 28431 49185 49185 -0.018541659192806037 NAVEENKAF 9 Unmodified _NAVEENKAF_ 0 0 0 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2506103515625 2 511.251089 1020.48762 -0.1775 -9.0749E-05 0.69419 0.0003549 0.51668 0.00026415 511.2516623578099 24.679 0.31312 24.679 24.51 24.823 0 39 17 3 0 0 0 0.028475 1 12590 12590 56.177 1.4035 1 3759600 41810 8908 27722 28432 49186 49186 -0.021800108331490264 NAVEQASEAVY 11 Unmodified _NAVEQASEAVY_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1;ENST00000489992.5_1_1:154961096-154965253:+|nuORF;nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7786865234375 2 590.777667 1179.54078 0.078533 4.6395E-05 2.4918 0.0014721 2.5704 0.0015185 590.7797591561017 39.754 0.33448 39.754 39.639 39.973 0 27 16 2 0 0 0 0.12646 1 21323 21323 55.235 31.214 1 3443700 41811 6742 27723 28433 49187 49187 -0.041806778411455525 NAVITVPAY 9 Unmodified _NAVITVPAY_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.5194091796875 1 947.519659 946.512382 -0.22682 -0.00021491 2.3793 0.0022544 2.1525 0.0020395 947.5217576724604 59.348 0.36238 59.348 59.192 59.555 0 34 15 3 0 0 0 0.06187 1 33024 33024 42.095 2.1372 1 5118900 41812 10277;2938 27724 28434 49188 49188 0.03698669040227287 NAVITVPAY 9 Unmodified _NAVITVPAY_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.5177001953125 1 947.519659 946.512382 0.10721 0.00010158 -0.91016 -0.00086239 -0.80295 -0.00076081 947.5186898974093 60.016 0.23422 59.525 59.372 59.607 -0.49079 19 11 2 0 0 0 0.06187 1 32621 32621 42.095 15.211 1 3337800 41813 10277;2938 27724 28434 49189 49189 0.03698669040227287 NAVITVPAY 9 Unmodified _NAVITVPAY_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2653503417969 2 474.263468 946.512382 NaN NaN NaN NaN NaN NaN NaN 60.119 1 59.628 59.128 60.128 -0.49079 0 0 0 0.10545 1 32727 32727 42.095 13.608 1 41814 10277;2938 27724 28434 49190 49190 0.03698669040227287 NAVITVPAY 9 Unmodified _NAVITVPAY_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 947.5195922851562 1 947.519659 946.512382 0.32374 0.00030675 0.37475 0.00035509 0.69849 0.00066183 947.5200742472473 67.218 0.4277 61.042 60.808 61.236 -6.1757 52 23 3 0 0 0 0.012148 3 43765 43636;43765;43891 74.423 24.49 1 30701000 41815 10277;2938 27724 28434 49191;49192;49193 49192 0.03698669040227287 NAVITVPAY 9 Unmodified _NAVITVPAY_ 0 0 0 ENSG00000113013|ENST00000297185|HSPA9;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000113013|ENST00000297185|HSPA9;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.263916015625 2 474.263468 946.512382 0.78127 0.00037053 1.6802 0.00079687 2.4615 0.0011674 474.26382225818145 67.214 0.58869 61.038 60.872 61.46 -6.1757 81 32 4 0 0 0 0.031062 1 43818 43818 54.774 12.679 1 67493000 41816 10277;2938 27724 28434 49194 49194 0.03698669040227287 NAVIVSIEY 9 Unmodified _NAVIVSIEY_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.273681640625 2 504.274032 1006.53351 0.85281 0.00043005 0.60248 0.00030381 1.4553 0.00073387 504.27428184623767 73.012 0.40107 66.837 66.658 67.059 -6.1757 37 19 2 0 0 0 0.07916 2 47691 47691;47815 37.974 17.52 1 38157000 41817 5661 27725 28435 49195;49196 49195 0.030506343490856125 NAVKDFTSF 9 Unmodified _NAVKDFTSF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7554931640625 2 514.756007 1027.49746 0.25246 0.00012995 -0.86571 -0.00044563 -0.61326 -0.00031568 514.7559809733765 48.698 0.31867 48.326 48.162 48.48 -0.37172 30 17 2 0 0 0 0.008513 1 26125 26125 99.755 34.52 1 13847000 41818 7797 27726 28436 49197 49197 -0.015188228277793314 NAVKDFTSF 9 Unmodified _NAVKDFTSF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MSMS AL20221201_MKP_PDAC_01 4 514.7567749023438 2 514.756007 1027.49746 NaN NaN NaN NaN NaN NaN NaN 54.468 1 48.603 48.103 49.103 -5.8653 0 0 0 0.090869 1 34554 34554 45.74 18.856 1 41819 7797 27726 28436 49198 49198 -0.015188228277793314 NAVKDFTSF 9 Unmodified _NAVKDFTSF_ 0 0 0 nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2;ENSG00000168769|ENST00000380013|TET2 nc|ENSG00000168769|Q6N021-2|TET2 nc|ENSG00000168769|Q6N021-2|TET2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.756007 1027.49746 -0.16193 -8.3354E-05 -0.89629 -0.00046137 -1.0582 -0.00054472 514.7555277191839 48.371 0.25954 48.371 48.272 48.531 0 0.022338 -9.2195E-06 NaN 99.755 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6589100 41820 7797 27726 28436 -0.015188228277793314 NAVKLDDTY 9 Unmodified _NAVKLDDTY_ 0 0 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.75927734375 2 519.758746 1037.50294 -0.61757 -0.00032099 2.8386 0.0014754 2.221 0.0011544 519.7602505919588 32.145 0.3031 32.145 31.92 32.223 0 22 10 3 0 0 0 0.036857 1 16771 16771 51.63 26.23 1 4532400 41821 7736 27727 28437 49199 49199 -0.014311440359733751 NAVNLAIKY 9 Unmodified _NAVNLAIKY_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.290283203125 2 503.290017 1004.56548 0.73009 0.00036745 0.1225 6.1652E-05 0.85259 0.0004291 503.29009888723476 49.244 0.24703 49.244 49.105 49.352 0 31 11 4 0 0 0 0.015445 1 27053 27053 68.081 28.123 1 11493000 41822 10105 27728 28438 49200 49200 0.06338046822895649 NAVNLAIKY 9 Unmodified _NAVNLAIKY_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2905578613281 2 503.290017 1004.56548 0.33965 0.00017094 0.50544 0.00025438 0.84509 0.00042532 503.2901755684146 49.581 0.33083 49.188 49.022 49.353 -0.3923 51 16 4 0 0 0 0.009483 2 26710 26609;26710 81.89 35.869 1 73006000 41823 10105 27728 28438 49201;49202 49202 0.06338046822895649 NAVNLAIKY 9 Unmodified _NAVNLAIKY_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2904052734375 2 503.290017 1004.56548 0.51307 0.00025822 0.29382 0.00014788 0.80689 0.0004061 503.2900892287192 49.237 0.26603 49.193 49.049 49.315 -0.043694 35 12 4 0 0 0 0.0088174 1 26561 26561 103.75 48.975 1 9561500 41824 10105 27728 28438 49203 49203 0.06338046822895649 NAVNLAIKY 9 Unmodified _NAVNLAIKY_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.29150390625 2 503.290017 1004.56548 1.1162 0.00056176 1.28 0.00064423 2.3962 0.001206 503.2906209398665 55.009 0.68206 49.088 48.808 49.49 -5.9211 126 42 4 0 0 0 0.0082661 3 34802 34802;34941;35078 92.491 46.47 1 371470000 41825 10105 27728 28438 49204;49205;49206 49204 0.06338046822895649 NAVQILEQF 9 Unmodified _NAVQILEQF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2850341796875 2 531.284931 1060.55531 0.34723 0.00018448 -0.097264 -5.1675E-05 0.24996 0.0001328 531.2848740661726 81.807 0.39226 81.807 81.593 81.985 0 50 23 3 0 0 0 0.026094 2 45423 45325;45423 57.471 17.514 1 4875600 41826 9970 27729 28439 49207;49208 49208 0.027454390976799914 NAVQILEQF 9 Unmodified _NAVQILEQF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2855834960938 2 531.284931 1060.55531 0.56106 0.00029808 0.068341 3.6308E-05 0.6294 0.00033439 531.2849667884702 82.324 0.40568 81.829 81.65 82.055 -0.4952 29 16 2 0 0 0 0.042911 2 45126 45023;45126 48.346 21.462 1 6826900 41827 9970 27729 28439 49209;49210 49210 0.027454390976799914 NAVQILEQF 9 Unmodified _NAVQILEQF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2887573242188 2 531.284931 1060.55531 0.98778 0.00052479 1.7815 0.00094649 2.7693 0.0014713 531.2859129619654 91.708 0.73738 85.533 84.911 85.648 -6.1757 81 41 3 0 0 0 0.10734 2 60425 60425;60584 32.305 15.363 1 26468000 41828 9970 27729 28439 49211;49212 49211 0.027454390976799914 NAVQILEQF 9 Unmodified _NAVQILEQF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.284931 1060.55531 1.8493 0.00098248 -0.8303 -0.00044113 1.0189 0.00054135 531.2847903772188 81.798 0.29289 81.858 81.659 81.952 0.059929 0.02669 -0.00072991 NaN 57.471 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1417000 41829 9970 27729 28439 0.027454390976799914 NAVRIEQEF 9 Unmodified _NAVRIEQEF_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2556762695312 2 553.285463 1104.55637 0.19318 0.00010688 -1.4899 -0.00082437 -1.2968 -0.00071748 553.284679452272 41.942 0.24479 41.942 41.804 42.049 0 28 12 3 0 0 0 0.16524 1 22635 22635 26.268 8.1218 1 7611900 41830 8150 27730 28440 49213 49213 0.008276534665583313 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.5046997070312 1 933.504009 932.496732 0.054316 5.0704E-05 0.056853 5.3072E-05 0.11117 0.00010378 933.5039573100152 52.14 0.40585 52.14 51.996 52.402 0 52 17 4 0 0 0 0.0083087 2 28790 28790;28900 97.075 38.396 1 28733000 41831 2688 27731 28441 49214;49215 49214 0.027783825231722403 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2557067871094 2 467.255643 932.496732 0.1952 9.1209E-05 0.25874 0.0001209 0.45394 0.00021211 467.2556852716285 52.193 0.38018 52.193 51.996 52.376 0 59 16 5 0 0 0 0.012148 2 28795 28795;28903 74.423 40.021 1 47487000 41832 2688 27731 28441 49216;49217 49216 0.027783825231722403 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2551574707031 2 467.255643 932.496732 0.33851 0.00015817 -0.083861 -3.9185E-05 0.25465 0.00011899 467.25549410335947 52.799 0.33662 52.347 52.179 52.515 -0.45173 35 16 3 0 0 0 0.031062 2 28501 28501;28616 54.774 18.647 1 8592300 41833 2688 27731 28441 49218;49219 49218 0.027783825231722403 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.503173828125 1 933.504009 932.496732 0.33281 0.00031068 -0.15608 -0.0001457 0.17673 0.00016498 933.5038269392772 52.786 0.27782 52.334 52.198 52.476 -0.45173 29 13 3 0 0 0 0.0090851 2 28507 28507;28611 85.357 26.678 1 5794400 41834 2688 27731 28441 49220;49221 49220 0.027783825231722403 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.5071411132812 1 933.504009 932.496732 1.0084 0.00094135 -0.46782 -0.00043671 0.54059 0.00050464 933.5037102660042 60.203 0.47231 54.089 53.852 54.325 -6.1147 58 24 3 0 0 0 0.0090851 3 38630 38630;38755;38874 85.357 26.678 1 124900000 41835 2688 27731 28441 49222;49223;49224 49222 0.027783825231722403 NAVVTVPAY 9 Unmodified _NAVVTVPAY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000454171.1_1_7:84657519-84657798:+|nuORF;ENST00000532167.5_1_11:122930757-122931830:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2581176757812 2 467.255643 932.496732 0.89893 0.00042003 0.30247 0.00014133 1.2014 0.00056136 467.2557704776762 60.202 0.47116 54.087 53.87 54.341 -6.1147 62 24 3 0 0 0 0.012148 2 38635 38635;38774 74.423 32.583 1 211940000 41836 2688 27731 28441 49225;49226 49225 0.027783825231722403 NAWADIERF 9 Unmodified _NAWADIERF_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4;ENST00000482965.1_1_3:125168048-125179619:-|nuORF ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2743530273438 2 561.272355 1120.53016 0.37095 0.00020821 -0.50012 -0.00028071 -0.12917 -7.2501E-05 561.2722217663744 63.325 0.31257 63.325 63.122 63.434 0 32 13 3 0 0 0 0.033587 2 35270 35270;35367 53.404 30.668 1 8282000 41837 3044 27732 28442 49227;49228 49227 -0.025286157049322355 NAWAFYFL 8 Unmodified _NAWAFYFL_ 0 0 0 ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF ENST00000496494.5_1_8:72111577-72234167:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.751220703125 2 516.252903 1030.49125 -0.46321 -0.00023914 -0.26432 -0.00013645 -0.72753 -0.00037559 516.2527965701429 28.544 0.34356 28.544 28.418 28.761 0 30 18 2 0 0 0 8.7369 1 14734 14734 9.3474 0.75416 1 6794600 41838 14370 27733 28443 49229 49229 -0.0227729626863038 NAWHSKNF 8 Unmodified _NAWHSKNF_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.240234375 2 502.240858 1002.46716 0.42912 0.00021552 0.36919 0.00018542 0.79831 0.00040095 502.2405185224427 77.293 0.17825 77.293 77.161 77.339 0 9 6 2 0 0 0 0.80143 1 42984 42984 5.7604 0 1 595510 41839 5553 27734 28444 49230 49230 -0.03397136702290027 NAWLSYELQL 10 Unmodified _NAWLSYELQL_ 0 0 0 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8800964355469 3 412.880156 1235.61864 -0.50489 -0.00020846 -0.50979 -0.00021048 -1.0147 -0.00041894 412.8799183494341 25.193 0.35468 25.193 25.051 25.406 0 41 17 3 0 0 0 0.70734 1 12965 12965 2.086 0.17963 1 3281600 41840 16509 27735 28445 49231 49231 0.010253798149051363 NAWNNLEKY 9 Unmodified _NAWNNLEKY_ 0 0 0 ENSG00000167136|ENST00000372642|ENDOG ENSG00000167136|ENST00000372642|ENDOG ENSG00000167136|ENST00000372642|ENDOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.27783203125 2 576.277638 1150.54072 1.1152 0.00064269 -0.72101 -0.0004155 0.39423 0.00022719 576.277068096738 50.568 0.45577 45.029 44.808 45.264 -5.5391 65 28 3 0 0 0 0.017075 2 31754 31614;31754 66.457 46.003 1 115470000 41841 7579 27736 28446 49232;49233 49233 -0.02852633050474651 NAWTALETY 9 Unmodified _NAWTALETY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7540893554688 2 534.753464 1067.49238 0.45822 0.00024503 -0.11985 -6.409E-05 0.33837 0.00018094 534.7532974661938 67.495 0.4306 67.495 67.226 67.656 0 62 19 4 0 0 0 0.0082661 2 37575 37575;37682 92.491 54.517 1 23372000 41842 10089 27737 28447 49234;49235 49234 -0.03867126690352052 NAWTALETY 9 Unmodified _NAWTALETY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7529907226562 2 534.753464 1067.49238 0.59579 0.0003186 -1.2703 -0.00067931 -0.67453 -0.00036071 534.7527839348515 68.022 0.35393 67.54 67.37 67.724 -0.48218 42 16 3 0 0 0 0.015445 2 37130 37130;37235 68.081 44.932 1 15679000 41843 10089 27737 28447 49236;49237 49236 -0.03867126690352052 NAWTALETY 9 Unmodified _NAWTALETY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7531127929688 2 534.753464 1067.49238 0.89789 0.00048015 0.29128 0.00015577 1.1892 0.00063591 534.7533302216555 74.21 0.76634 68.034 67.707 68.473 -6.1757 93 39 3 0 0 0 0.009483 4 48390 48375;48390;48511;48642 81.89 47.788 1 40864000 41844 10089 27737 28447 49238;49239;49240;49241 49239 -0.03867126690352052 NAWTALETY 9 Unmodified _NAWTALETY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.7538452148438 2 534.753464 1067.49238 NaN NaN NaN NaN NaN NaN NaN 74.655 1 68.479 67.979 68.979 -6.1757 0 0 0 0.25233 1 48810 48810 27.629 13.723 1 41845 10089 27737 28447 49242 49242 -0.03867126690352052 NAWTALETY 9 Unmodified _NAWTALETY_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.753464 1067.49238 0.42405 0.00022676 0.54989 0.00029406 0.97394 0.00052082 534.7542323859956 68.277 0.22639 68.277 68.165 68.391 0 0.12133 0.00025676 NaN 81.89 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 517860 41846 10089 27737 28447 -0.03867126690352052 NAYALCWLDC 10 Unmodified _NAYALCWLDC_ 0 0 0 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 ENSG00000132952|ENST00000255304|USPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2494506835938 2 586.249177 1170.4838 0.46078 0.00027013 -0.17463 -0.00010238 0.28615 0.00016776 586.2491694963124 53.764 0.32609 53.764 53.665 53.991 0 31 14 3 0 0 0 0.35903 1 29838 29838 24.021 1.2843 1 4000800 41847 4468 27738 28448 49243 49243 -0.09462139922857205 NAYEDLSQKY 10 Unmodified _NAYEDLSQKY_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.785888671875 2 615.785492 1229.55643 0.84967 0.00052321 -0.74808 -0.00046066 0.10159 6.2557E-05 615.7850909492729 36.42 0.25694 36.42 36.29 36.547 0 35 12 4 0 0 0 0.040797 1 19294 19294 80.676 54.408 1 16623000 41848 3335 27739 28449 49244 49244 -0.04916391324081815 NAYEDLSQKY 10 Unmodified _NAYEDLSQKY_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.7852172851562 2 615.785492 1229.55643 0.70921 0.00043672 -0.66629 -0.00041029 0.042921 2.643E-05 615.7848482673434 41.519 0.34081 36.911 36.833 37.173 -4.6079 45 22 3 0 0 0 0.016771 2 24912 24912;25045 100.09 58.135 1 22633000 41849 3335 27739 28449 49245;49246 49245 -0.04916391324081815 NAYGALDAY 9 Unmodified _NAYGALDAY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.4309692382812 1 957.431238 956.423961 0.18838 0.00018036 1.0457 0.0010012 1.2341 0.0011815 957.4324602930697 47.374 0.26698 47.374 47.25 47.517 0 21 11 2 0 0 0 0.038285 2 25896 25896;26003 50.855 21.773 1 3450700 41850 8379;16567 27740 28450 49247;49248 49247 -0.05599371270250231 NAYGALDAY 9 Unmodified _NAYGALDAY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7385559082031 2 479.219257 956.423961 0.52086 0.00024961 -0.67928 -0.00032552 -0.15842 -7.5916E-05 479.21930645130504 47.374 0.26698 47.374 47.25 47.517 0 18 11 3 0 0 0 0.19613 1 25912 25912 12.532 0 1 2322700 41851 8379;16567 27740 28450 49249 49249 -0.05599371270250231 NAYLRLMPVAF 11 Unmodified _NAYLRLMPVAF_ 0 0 0 REV__ENSG00000136213|ENST00000618655|CHST12 REV__ENSG00000136213|ENST00000618655|CHST12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.8544921875 2 647.852458 1293.69036 NaN NaN NaN NaN NaN NaN NaN 54.734 1 54.267 53.767 54.767 -0.46664 0 0 0 0.93648 1 29670 29670 3.2813 0.28607 1 + 41852 20146 27741 28451 49250 49250 0.0552659596776266 NAYNFFWYLHF 11 Unmodified _NAYNFFWYLHF_ 0 0 0 nc|ENSG00000211776|A0A0B4J234|TRAV2 nc|ENSG00000211776|A0A0B4J234|TRAV2 nc|ENSG00000211776|A0A0B4J234|TRAV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 761.3506469726562 2 761.351137 1520.68772 -0.0059639 -4.5406E-06 -0.93847 -0.0007145 -0.94443 -0.00071904 761.350368753937 86.873 0.59641 86.873 86.56 87.156 0 124 35 4 0 0 0 0.67922 1 48093 48093 6.2058 0.9089 1 6266800 41853 16528 27742 28452 49251 49251 -0.05179536165519494 NAYNFFWYLHF 11 Unmodified _NAYNFFWYLHF_ 0 0 0 nc|ENSG00000211776|A0A0B4J234|TRAV2 nc|ENSG00000211776|A0A0B4J234|TRAV2 nc|ENSG00000211776|A0A0B4J234|TRAV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 761.3496704101562 2 761.351137 1520.68772 -0.0041512 -3.1605E-06 -0.17717 -0.00013489 -0.18132 -0.00013805 761.3508162024564 96.524 0.50542 96.524 96.285 96.79 0 47 35 2 0 0 0 0.74203 1 53370 53370 0.30703 0 1 589570 41854 16528 27742 28452 49252 49252 -0.05179536165519494 NAYYEEVVY 9 Unmodified _NAYYEEVVY_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.259033203125 2 575.258579 1148.50261 0.73362 0.00042202 -0.19005 -0.00010933 0.54357 0.00031269 575.2584402636172 53.779 0.40692 53.779 53.584 53.991 0 61 18 4 0 0 0 0.047714 2 29872 29760;29872 58.679 50.769 1 56388000 41855 2589 27743 28453 49253;49254 49254 -0.0657056375580396 NAYYEEVVY 9 Unmodified _NAYYEEVVY_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2589111328125 2 575.258579 1148.50261 0.85256 0.00049044 -0.077906 -4.4816E-05 0.77466 0.00044563 575.2584795388891 61.84 0.39417 55.664 55.48 55.875 -6.1757 39 20 2 0 0 0 0.037253 2 39772 39772;39896 65.235 49.388 1 88014000 41856 2589 27743 28453 49255;49256 49255 -0.0657056375580396 NAYYEEVVY 9 Unmodified _NAYYEEVVY_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 575.258579 1148.50261 0.049227 2.8318E-05 0.15338 8.8231E-05 0.2026 0.00011655 575.2589232689337 54.119 0.22042 54.052 53.901 54.122 -0.066936 0.13623 0.00033096 NaN 58.679 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1900300 41857 2589 27743 28453 -0.0657056375580396 NCALDDIEWF 10 Unmodified _NCALDDIEWF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.2620239257812 2 613.263339 1224.51212 NaN NaN NaN NaN NaN NaN NaN 78.528 1 78.042 77.542 78.542 -0.48596 0 0 0 0.94014 1 43011 43011 6.2058 1.3088 1 41858 8657 27744 28454 49257 49257 -0.09115118741965489 NCDMSHGQDC 10 Unmodified _NCDMSHGQDC_ 0 0 0 nc|ENSG00000019991|P14210-3|HGF;ENSG00000019991|ENST00000222390|HGF nc|ENSG00000019991|P14210-3|HGF nc|ENSG00000019991|P14210-3|HGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.1760864257812 2 555.175883 1108.33721 NaN NaN NaN NaN NaN NaN NaN 0.46747 1 0.46747 -0.032533 0.96747 0 0 0 0 1.0061 1 231 231 0 0 1 41859 518 27745 28455 49258 49258 -0.21262185150249024 NCEPVRAL 8 Unmodified _NCEPVRAL_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2305603027344 2 451.231645 900.448736 0.56671 0.00025572 -1.5999 -0.00072194 -1.0332 -0.00046622 451.23059275543045 58.198 0.75681 58.198 57.657 58.414 0 57 31 3 0 0 0 0.80143 1 32419 32419 5.7604 0 1 2464500 + 41860 21920 27746 28456 49259 49259 -0.005470146685183863 NCHKLFPY 8 Unmodified _NCHKLFPY_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2653503417969 2 511.249837 1020.48512 NaN NaN NaN NaN NaN NaN NaN 31.569 1 31.569 31.069 32.069 0 0 0 0 0.97444 1 16449 16449 2.8892 0 1 41861 7146 27747 28457 49260 49260 -0.02430137771796126 NCHNRKWLR 9 Unmodified _NCHNRKWLR_ 0 0 0 REV__nc|ENSG00000136250|P28039-2|AOAH REV__nc|ENSG00000136250|P28039-2|AOAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5484619140625 3 409.548969 1225.62508 -0.17756 -7.272E-05 1.192 0.00048818 1.0144 0.00041546 409.5494938537376 21.903 0.33592 21.926 21.785 22.121 0.022896 22 14 2 0 0 0 0.61801 1 11226 11226 0.26902 0 1 771350 + 41862 20151 27748 28458 49261 49261 0.02129039285273393 NCKRSSRH 8 Unmodified _NCKRSSRH_ 0 0 0 ENST00000450873.6_2_7:66274114-66274156:+|nuORF ENST00000450873.6_2_7:66274114-66274156:+|nuORF ENST00000450873.6_2_7:66274114-66274156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2488708496094 2 494.248692 986.48283 0.68388 0.00033801 0.65912 0.00032577 1.343 0.00066378 494.24908752172286 69.295 0.24461 69.326 69.147 69.392 0.030914 18 11 2 0 0 0 0.80311 1 38058 38058 4.756 2.1785 1 6286200 41863 13513 27749 28459 49262 49262 -0.010951734568948268 NCKTSKYIPF 10 Unmodified _NCKTSKYIPF_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8075561523438 2 600.807716 1199.60088 0.08298 4.9855E-05 0.72873 0.00043782 0.81171 0.00048768 601.3095461834209 80.952 0.67951 74.776 74.35 75.029 -6.1757 89 37 3 0 0 0 0.11755 1 53160 53160 43.858 11.073 1 38699000 + 41864 29495 27750 28460 49263 49263 0.00906341288373369 NCLHVVTLY 9 Carbamidomethyl (C) _NC(Carbamidomethyl (C))LHVVTLY_ NC(1)LHVVTLY NC(68)LHVVTLY 0 1 0 ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7885131835938 2 559.786784 1117.55902 1.1813 0.00066128 0.17741 9.9312E-05 1.3587 0.00076059 559.786694773719 60.404 0.36118 54.289 54.116 54.478 -6.1147 32 18 2 0 0 0 0.015445 2 38833 38833;38974 68.081 42.681 1 35056000 41865 1900 27751 28461 49264;49265 49264 186 0.004937855998832674 NCNFELLHF 9 Unmodified _NCNFELLHF_ 0 0 0 nc|ENSG00000186919|Q401N2-2|ZACN;ENSG00000186919|ENST00000334586|ZACN nc|ENSG00000186919|Q401N2-2|ZACN nc|ENSG00000186919|Q401N2-2|ZACN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5116577148438 3 379.511298 1135.51206 -0.36324 -0.00013785 0.75909 0.00028808 0.39585 0.00015023 379.51152384161827 23.839 0.38374 23.839 23.694 24.078 0 50 18 4 0 0 0 0.57331 1 12178 12178 2.9952 0 1 3708600 41866 9522 27752 28462 49266 49266 -0.05027073951282546 NCNFELLHF 9 Unmodified _NCNFELLHF_ 0 0 0 nc|ENSG00000186919|Q401N2-2|ZACN;ENSG00000186919|ENST00000334586|ZACN nc|ENSG00000186919|Q401N2-2|ZACN nc|ENSG00000186919|Q401N2-2|ZACN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7633056640625 2 568.763309 1135.51206 NaN NaN NaN NaN NaN NaN NaN 23.587 1 23.587 23.087 24.087 0 0 0 0 0.83812 1 12027 12027 2.3027 0 1 41867 9522 27752 28462 49267 49267 -0.05027073951282546 NCNPETVSTDF 11 Unmodified _NCNPETVSTDF_ 0 0 0 nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1 nc|ENSG00000021826|P31327-2|CPS1 nc|ENSG00000021826|P31327-2|CPS1 MSMS AL20221201_MKP_PDAC_01 4 613.750732421875 2 613.753335 1225.49212 NaN NaN NaN NaN NaN NaN NaN 72.706 1 66.531 66.031 67.031 -6.1757 0 0 0 0.86932 1 47564 47564 8.7454 2.0222 1 41868 530 27753 28463 49268 49268 -0.11160914472543482 NCNRYNEDDAK 11 Unmodified _NCNRYNEDDAK_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.8544616699219 3 447.854452 1340.54153 -0.45275 -0.00020277 -0.053427 -2.3928E-05 -0.50618 -0.0002267 447.85459863694774 28.017 0.32444 28.017 27.845 28.169 0 107 19 7 0 0 0 0.70147 3 14422 14422;14486;14525 4.1166 3.3401 1 44854000 41869 7457 27754 28464 49269;49270;49271 49269 -0.11512206463748953 NCNVADPAM 9 Carbamidomethyl (C),Oxidation (M) _NC(Carbamidomethyl (C))NVADPAM(Oxidation (M))_ NC(1)NVADPAM NCNVADPAM(1) NC(74)NVADPAM NCNVADPAM(74) 0 1 1 nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.1990051269531 2 504.199684 1006.38482 0.21599 0.0001089 -0.19091 -9.6257E-05 0.02508 1.2645E-05 504.1996881191029 23.726 0.36594 20.899 20.741 21.107 -2.8273 33 22 2 0 0 0 0.012148 2 12825 12825;12937 74.423 63.599 1 4396300 41870 9458 27755 28465 49272;49273 49272 879 1557 -0.11812162887770228 NCPRSGTE 8 Unmodified _NCPRSGTE_ 0 0 0 ENST00000481171.5_1_17:37814925-37815866:+|nuORF ENST00000481171.5_1_17:37814925-37815866:+|nuORF ENST00000481171.5_1_17:37814925-37815866:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 863.3698120117188 1 863.367592 862.360315 0.11267 9.7276E-05 0.4263 0.00036805 0.53897 0.00046533 863.3679082763601 81.993 0.4491 81.993 81.82 82.269 0 37 24 2 0 0 0 0.80992 1 45579 45579 0.69038 0 1 768800 41871 14075 27756 28466 49274 49274 -0.07637054978965807 NCREVLEAF 9 Unmodified _NCREVLEAF_ 0 0 0 ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L ENST00000578955.1_1_18:19057140-19088617:+|nuORF ENST00000578955.1_1_18:19057140-19088617:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7600708007812 2 540.760766 1079.50698 0.11672 6.312E-05 -1.6538 -0.0008943 -1.5371 -0.00083118 540.7598215350249 58.827 0.26191 58.336 58.252 58.514 -0.49079 32 12 3 0 0 0 0.094149 1 32006 32006 34.402 8.1336 1 3939200 41872 5334 27757 28467 49275 49275 -0.029593778138860216 NCSKNLPNHLY 11 Unmodified _NCSKNLPNHLY_ 0 0 0 ENST00000475654.5_1_1:35561461-35575934:+|nuORF ENST00000475654.5_1_1:35561461-35575934:+|nuORF ENST00000475654.5_1_1:35561461-35575934:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822631835938 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 66.835 1 66.352 65.852 66.852 -0.48323 0 0 0 0.94184 1 36507 36507 0.40827 0.078994 1 41873 13965 27758 28468 49276 49276 -0.02008943456758061 NCSQHDRAL 9 Unmodified _NCSQHDRAL_ 0 0 0 ENSG00000152684|ENST00000274311|PELO ENSG00000152684|ENST00000274311|PELO ENSG00000152684|ENST00000274311|PELO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2395629882812 2 522.23799 1042.46143 0.56994 0.00029765 1.6917 0.00088346 2.2616 0.0011811 522.2388890840184 74.941 0.37423 74.941 74.763 75.137 0 30 20 2 0 0 0 0.55144 1 41643 41643 4.3292 1.44 1 1350900 41874 6206 27759 28469 49277 49277 -0.05810603276290749 NCSSFCIAKF 10 Unmodified _NCSSFCIAKF_ 0 0 0 REV__ENST00000398101.7_1_3:127455041-127455185:-|nuORF REV__ENST00000398101.7_1_3:127455041-127455185:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2627563476562 2 560.25172 1118.48889 0.42977 0.00024078 2.9466 0.0016508 3.3763 0.0018916 560.2528376152818 59.017 0.57167 59.017 58.829 59.4 0 63 24 4 0 0 0 0.63399 1 32957 32957 9.3831 0.035688 1 36903000 + 41875 26557 27760 28470 49278 49278 -0.06561836060268433 NCVCVCACMHM 11 Unmodified _NCVCVCACMHM_ 0 0 0 ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2091064453125 2 607.209303 1212.40405 NaN NaN NaN NaN NaN NaN NaN 4.4217 1 4.4154 3.9154 4.9154 -0.0062971 0 0 0 0.9435 1 2238 2238 0 0 1 41876 14158 27761 28471 49279 49279 -0.1936531245603419 NCVCVCACMHM 11 Unmodified _NCVCVCACMHM_ 0 0 0 ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENST00000484751.1_1_7:66410067-66416200:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2072143554688 2 607.209303 1212.40405 NaN NaN NaN NaN NaN NaN NaN 10.579 1 10.595 10.095 11.095 0.015327 0 0 0 0.9435 1 5231 5231 0 0 1 41877 14158 27761 28471 49280 49280 -0.1936531245603419 NCVRVTGSI 9 Unmodified _NCVRVTGSI_ 0 0 0 REV__ENSG00000132825|ENST00000370996|PPP1R3D REV__ENSG00000132825|ENST00000370996|PPP1R3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7495727539062 2 474.750201 947.48585 -0.086388 -4.1013E-05 -0.61431 -0.00029164 -0.70069 -0.00033265 474.7502633226896 21.832 0.25437 21.855 21.728 21.982 0.022896 29 11 3 0 0 0 0.52067 1 11033 11033 6.2058 0 1 2212000 + 41878 19883 27762 28472 49281 49281 0.010006568772496394 NDCWWASNL 9 Unmodified _NDCWWASNL_ 0 0 0 REV__ENSG00000171489|ENST00000376940|SPACA5 REV__ENSG00000171489|ENST00000376940|SPACA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7304077148438 2 554.729466 1107.44438 0.83563 0.00046355 1.7769 0.00098568 2.6125 0.0014492 554.7304251880187 72.567 0.3297 72.091 71.9 72.23 -0.47609 44 15 4 0 0 0 0.55144 1 39717 39717 4.3292 0.73274 1 2475700 + 41879 22564 27763 28473 49282 49282 -0.1050452388208214 NDDFYHWQ 8 Unmodified _NDDFYHWQ_ 0 0 0 REV__nc|ENSG00000102226|P51784|USP11 REV__nc|ENSG00000102226|P51784|USP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7235107421875 2 562.725238 1123.43592 NaN NaN NaN NaN NaN NaN NaN 91.092 1 91.092 90.592 91.592 0 0 0 0 0.97444 1 50381 50381 0.69038 0 1 + 41880 18229 27764 28474 49283 49283 -0.12085754527060999 NDDWLVHYHS 10 Unmodified _NDDWLVHYHS_ 0 0 0 REV__nc|ENSG00000126070|Q9H9G7-2|AGO3 REV__nc|ENSG00000126070|Q9H9G7-2|AGO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.2847290039062 2 643.283451 1284.55235 0.42746 0.00027498 2.4334 0.0015654 2.8608 0.0018403 643.2852169704755 29.107 0.28392 29.045 28.992 29.276 -0.06216 15 12 2 0 0 0 0.71276 1 15096 15096 1.4819 0.15237 1 4880000 + 41881 19407 27765 28475 49284 49284 -0.07854436027150768 NDEATVNHIIL 11 Unmodified _NDEATVNHIIL_ 0 0 0 REV__nc|ENSG00000291104|Q96KV6|BTN2A3P REV__nc|ENSG00000291104|Q96KV6|BTN2A3P MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5516052246094 3 413.550698 1237.63027 0.39784 0.00016453 -0.20151 -8.3336E-05 0.19633 8.1193E-05 413.5506209602834 23.697 0.33443 20.87 20.689 21.024 -2.8273 34 20 2 0 0 0 0.71728 1 12782 12782 2.6312 0.72486 1 4386700 + 41882 30036 27766 28476 49285 49285 0.02095576838269153 NDEEMKEDEES 11 Unmodified _NDEEMKEDEES_ 0 0 0 REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF REV__ENST00000519559.1_1_8:52732913-52752014:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.1693115234375 3 452.169883 1353.48782 0.66202 0.00029935 -0.74033 -0.00033475 -0.078304 -3.5407E-05 452.16955640427335 43.092 0.50924 43.092 42.87 43.379 0 49 25 2 0 0 0 0.73115 1 23304 23304 0.45452 0 1 74553000 + 41883 22303 27767 28477 49286 49286 -0.17478468476770104 NDELLYDPEKD 11 Unmodified _NDELLYDPEKD_ 0 0 0 ENSG00000129518|ENST00000250454|EAPP ENSG00000129518|ENST00000250454|EAPP ENSG00000129518|ENST00000250454|EAPP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.8724670410156 3 450.873507 1349.59869 NaN NaN NaN NaN NaN NaN NaN 5.0869 1 5.0869 4.5869 5.5869 0 0 0 0 0.9435 1 2448 2448 0 0 1 41884 4146 27768 28478 49287 49287 -0.06212460706387901 NDELYWSF 8 Unmodified _NDELYWSF_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2324829101562 2 537.232364 1072.45018 0.28067 0.00015079 -0.0071451 -3.8386E-06 0.27353 0.00014695 537.2324559800496 96.045 0.37361 95.74 95.541 95.915 -0.30473 30 20 2 0 0 0 0.80624 1 52436 52436 2.8892 0.58649 1 655120 + 41885 17227 27769 28479 49288 49288 -0.08315102098754323 NDFTYSVGL 9 Unmodified _NDFTYSVGL_ 0 0 0 REV__nc|ENSG00000150527|Q96PC5-2|MIA2 REV__nc|ENSG00000150527|Q96PC5-2|MIA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2398986816406 2 508.24019 1014.46583 NaN NaN NaN NaN NaN NaN NaN 77.557 1 77.557 77.057 78.057 0 0 0 0 0.6557 1 43117 43117 10.824 2.2306 1 + 41886 21028 27770 28480 49289 49289 -0.0408281558170529 NDHPPLQYL 9 Unmodified _NDHPPLQYL_ 0 0 0 REV__ENSG00000139174|ENST00000345127|PRICKLE1 REV__ENSG00000139174|ENST00000345127|PRICKLE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1846313476562 3 366.185579 1095.53491 NaN NaN NaN NaN NaN NaN NaN 28.625 1 28.563 28.063 29.063 -0.062159 0 0 0 0.76439 1 14780 14780 4.5289 0.58447 1 + 41887 20391 27771 28481 49290 49290 -0.009037315621526432 NDIGRRTSG 9 Unmodified _NDIGRRTSG_ 0 0 0 REV__nc|ENSG00000051341|O75417-2|POLQ REV__nc|ENSG00000051341|O75417-2|POLQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2497863769531 2 488.251954 974.489356 NaN NaN NaN NaN NaN NaN NaN 20.283 1 20.294 19.794 20.794 0.010553 0 0 0 0.81228 1 10340 10340 5.7319 0.83484 1 + 41888 17266 27772 28482 49291 49291 0.001090429754754041 NDIHIILSREF 11 Unmodified _NDIHIILSREF_ 0 0 0 REV__ENSG00000163755|ENST00000296051|HPS3 REV__ENSG00000163755|ENST00000296051|HPS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.9140930175781 3 452.91386 1355.71975 NaN NaN NaN NaN NaN NaN NaN 30.851 1 30.749 30.249 31.249 -0.10269 0 0 0 0.9428 1 16021 16021 0.50596 0.34663 1 + 41889 21812 27773 28483 49292 49292 0.05611831517626342 NDIKIETL 8 Unmodified _NDIKIETL_ 0 0 0 REV__nc|ENSG00000128872|Q9NZR1-2|TMOD2 REV__nc|ENSG00000128872|Q9NZR1-2|TMOD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.5643615722656 2 473.266207 944.517862 -0.12401 -5.8688E-05 0.71748 0.00033956 0.59348 0.00028087 473.266813604555 29.373 0.14693 29.373 29.285 29.432 0 9 6 2 0 0 0 8.7369 1 15210 15210 6.7232 0 1 328370 + 41890 19639 27774 28484 49293 49293 0.04338347832049294 NDKCPNTAY 9 Unmodified _NDKCPNTAY_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.2688598632812 2 513.221474 1024.42839 0.66659 0.00034211 0.49301 0.00025302 1.1596 0.00059513 513.2211324482452 82.959 0.43443 76.784 76.507 76.941 -6.1757 43 24 3 0 0 0 0.20554 1 54369 54369 9.3831 1.473 1 13519000 + 41891 17692 27775 28485 49294 49294 -0.08284230118988489 NDLALEKVDSP 11 Unmodified _NDLALEKVDSP_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8087158203125 2 600.808968 1199.60338 0.37514 0.00022539 -1.8318 -0.0011006 -1.4566 -0.00087517 600.8074809377341 50.678 0.44444 45.029 44.819 45.264 -5.649 46 27 2 0 0 0 0.18424 1 31757 31757 32.898 4.4033 1 48740000 + 41892 29974 27776 28486 49295 49295 0.011564682270318372 NDLIIVVP 8 Unmodified _NDLIIVVP_ 0 0 0 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7703552246094 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 65.225 1 65.225 64.725 65.725 0 0 0 0 0.97444 1 36385 36385 0.79363 0 1 + 41893 17425 27777 28487 49296 49296 0.07671857045613706 NDLLAAGF 8 Unmodified _NDLLAAGF_ 0 0 0 ENSG00000089723|ENST00000203664|OTUB2 ENSG00000089723|ENST00000203664|OTUB2 ENSG00000089723|ENST00000203664|OTUB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.7150268554688 2 410.713611 819.412668 NaN NaN NaN NaN NaN NaN NaN 35.695 1 35.72 35.22 36.22 0.024967 0 0 0 0.9706 1 18883 18883 6.3541 0.59368 1 41894 1535 27778 28488 49297 49297 -0.004261485737060866 NDLLELPSY 9 Unmodified _NDLLELPSY_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2659912109375 2 532.268947 1062.52334 -0.45163 -0.00024039 2.4502 0.0013042 1.9985 0.0010638 532.2667248957093 27.791 0.45719 27.791 27.488 27.945 0 43 21 3 0 0 0 0.1773 1 14215 14215 25.399 0 1 3521000 + 41895 22747 27779 28489 49298 49298 -0.005419733761300449 NDLTKITKKF 10 Unmodified _NDLTKITKKF_ 0 0 0 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3589477539062 2 604.355888 1206.69722 2.8498 0.0017223 -0.41798 -0.00025261 2.4318 0.0014697 604.3556241763325 97.151 1.7313 97.144 96.747 98.479 -0.007019 245 64 5 0 0 0 0.72196 4 53788 53788;53891;54116;54228 0.45834 0 1 177410000 + 41896 20469 27780 28490 49299;49300;49301;49302 49299 0.10214232119960798 NDLVLSCPY 9 Unmodified _NDLVLSCPY_ 0 0 0 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 ENSG00000116991|ENST00000674635|SIPA1L2 MSMS AL20221201_MKP_PDAC_01 4 512.244873046875 2 512.244418 1022.47428 NaN NaN NaN NaN NaN NaN NaN 72.444 1 66.268 65.768 66.768 -6.1757 0 0 0 0.10759 1 47395 47395 41.84 9.7227 1 41897 3274 27781 28491 49303 49303 -0.03605584936747164 NDNRCYEIIR 10 Unmodified _NDNRCYEIIR_ 0 0 0 REV__ENSG00000155890|ENST00000286349|TRIM42 REV__ENSG00000155890|ENST00000286349|TRIM42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5433959960938 3 432.543549 1294.60882 NaN NaN NaN NaN NaN NaN NaN 69.342 1 69.373 68.873 69.873 0.030914 0 0 0 0.92825 1 38113 38113 3.5871 0 1 + 41898 21297 27782 28492 49304 49304 -0.02670131462127756 NDPDIHPLTF 10 Unmodified _NDPDIHPLTF_ 0 0 0 REV__nc|ENSG00000117114|O95490-3|ADGRL2 REV__nc|ENSG00000117114|O95490-3|ADGRL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.78515625 2 584.785296 1167.55604 0.055636 3.2535E-05 -0.13266 -7.7575E-05 -0.07702 -4.504E-05 584.785154544367 65.496 0.54338 65.012 64.77 65.314 -0.48428 94 24 5 0 0 0 0.33553 1 35658 35658 25.399 7.253 1 219700000 + 41899 19084 27783 28493 49305 49305 -0.021037662532989998 NDPDIHPLTF 10 Unmodified _NDPDIHPLTF_ 0 0 0 REV__nc|ENSG00000117114|O95490-3|ADGRL2 REV__nc|ENSG00000117114|O95490-3|ADGRL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 584.785296 1167.55604 0.90179 0.00052735 -0.27168 -0.00015888 0.6301 0.00036848 584.785049728783 65.066 0.40446 65.066 64.836 65.241 1.5259E-05 0.065897 1.4242E-05 NaN 25.399 79 19 6 NaN NaN NaN NaN 0 NaN NaN 0 78612000 + 41900 19084 27783 28493 -0.021037662532989998 NDQLEYFY 8 Unmodified _NDQLEYFY_ 0 0 0 REV__ENSG00000086015|ENST00000361297|MAST2 REV__ENSG00000086015|ENST00000361297|MAST2 MSMS AL20221201_MKP_PDAC_01 4 546.2365112304688 2 546.237647 1090.46074 NaN NaN NaN NaN NaN NaN NaN 21.931 1 19.197 18.697 19.697 -2.7348 0 0 0 0.97444 1 11777 11777 5.2307 0.90143 1 + 41901 17762 27784 28494 49306 49306 -0.08087119444326163 NDQWLYYFT 9 Unmodified _NDQWLYYFT_ 0 0 0 REV__nc|ENSG00000100626|Q8N428-2|GALNT16 REV__nc|ENSG00000100626|Q8N428-2|GALNT16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2836303710938 2 625.279846 1248.54514 0.38651 0.00024168 0.22248 0.00013911 0.609 0.00038079 625.2799060439595 44.349 0.86641 39.497 38.88 39.746 -4.852 135 59 4 0 0 0 0.20428 1 26712 26712 22.736 1.1993 1 179960000 + 41902 18094 27785 28495 49307 49307 -0.06919168627587169 NDRDIYLVF 9 Unmodified _NDRDIYLVF_ 0 0 0 nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15 nc|ENSG00000181085|Q8TD08-2|MAPK15 nc|ENSG00000181085|Q8TD08-2|MAPK15 MSMS AL20221201_MKP_PDAC_01 4 577.799560546875 2 577.795663 1153.57677 NaN NaN NaN NaN NaN NaN NaN 97.484 1 91.308 90.808 91.808 -6.1757 0 0 0 0.29524 1 64604 64604 25.399 3.8623 1 41903 8950 27786 28496 49308 49308 0.006128241263922973 NDRLYIVM 8 Unmodified _NDRLYIVM_ 0 0 0 ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10 ENST00000574215.5_1_3:27203940-27332977:-|nuORF ENST00000574215.5_1_3:27203940-27332977:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.26953125 2 512.268227 1022.5219 NaN NaN NaN NaN NaN NaN NaN 74.761 1 68.585 68.085 69.085 -6.1757 0 0 0 0.62748 1 48878 48878 32.305 5.4218 1 41904 7001 27787 28497 49309 49309 0.011541140541226014 NDSYALLGELA 11 Unmodified _NDSYALLGELA_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1965637207031 3 389.196033 1164.56627 NaN NaN NaN NaN NaN NaN NaN 17.913 1 17.913 17.413 18.413 0 0 0 0 0.94201 1 8868 8868 0.36667 0 1 41905 16496 27788 28498 49310 49310 -0.009432033186840272 NDTDPFPVCL 10 Unmodified _NDTDPFPVCL_ 0 0 0 ENST00000563156.1_1_16:783563-783767:+|nuORF ENST00000563156.1_1_16:783563-783767:+|nuORF ENST00000563156.1_1_16:783563-783767:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.752197265625 2 560.752607 1119.49066 NaN NaN NaN NaN NaN NaN NaN 80.485 1 79.993 79.493 80.493 -0.49247 0 0 0 0.97302 1 44076 44076 3.5965 0 1 41906 15354 27789 28499 49311 49311 -0.06430503770639007 NDTSPSRIFAL 11 Unmodified _NDTSPSRIFAL_ 0 0 0 REV__nc|ENSG00000066230|P48764-2|SLC9A3 REV__nc|ENSG00000066230|P48764-2|SLC9A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5479431152344 3 407.547177 1219.6197 1.2825 0.0005227 -0.82537 -0.00033638 0.45718 0.00018632 407.546858975977 20.626 0.92709 17.933 17.544 18.471 -2.693 155 55 4 0 0 0 0.35681 2 10916 10916;11129 19.144 6.9164 1 33296000 + 41907 17398 27790 28500 49312;49313 49312 0.018675941838182553 NDVHRVYGTGN 11 Unmodified _NDVHRVYGTGN_ 0 0 0 REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1 REV__nc|ENSG00000135766|Q9GZT9-2|EGLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1983947753906 3 411.198659 1230.57415 0.68457 0.00028149 -1.5303 -0.00062928 -0.84577 -0.00034778 411.19830260368775 44.976 0.27434 40.124 39.992 40.267 -4.852 25 17 2 0 0 0 0.69708 1 27607 27607 2.084 0 1 10694000 + 41908 20098 27791 28501 49314 49314 -0.031916312785597256 NDYFRKSIFL 10 Unmodified _NDYFRKSIFL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145668058-145668220:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.8996276855469 3 434.89955 1301.67682 1.0542 0.00045846 1.9177 0.00083401 2.9719 0.0012925 435.23519785402675 74.996 0.66436 68.821 68.454 69.119 -6.1757 44 35 2 0 0 0 0.52659 1 48961 48961 14.957 4.6419 1 14468000 41909 6769 27792 28502 49315 49315 0.038050614601843336 NDYHDWNLYCY 11 Unmodified _NDYHDWNLYCY_ 0 0 0 REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.770751953125 3 502.531198 1504.57176 -0.26273 -0.00013203 -1.4174 -0.00071231 -1.6802 -0.00084434 502.86468222900305 55.816 0.24767 55.338 55.132 55.379 -0.47798 16 11 2 0 0 0 0.30598 1 30309 30309 0 0 1 1400500 + 41910 21752 27793 28503 49316 49316 -0.16033847798530587 NDYMMESHF 9 Unmodified _NDYMMESHF_ 0 0 0 REV__ENSG00000169814|ENST00000643237|BTD REV__ENSG00000169814|ENST00000643237|BTD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8169250488281 3 391.81617 1172.42668 0.66817 0.0002618 0.8973 0.00035158 1.5655 0.00061338 391.8164546990381 29.717 0.36692 29.637 29.501 29.868 -0.080431 47 16 4 0 0 0 0.60285 2 15347 15347;15457 1.1933 0 1 30185000 + 41911 22426 27794 28504 49317;49318 49317 -0.1526360719922195 NDYMMESHF 9 Unmodified _NDYMMESHF_ 0 0 0 REV__ENSG00000169814|ENST00000643237|BTD REV__ENSG00000169814|ENST00000643237|BTD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8173828125 3 391.81617 1172.42668 NaN NaN NaN NaN NaN NaN NaN 29.316 1 29.346 28.846 29.846 0.030106 0 0 0 0.84211 1 15293 15293 2.4985 0.75621 1 + 41912 22426 27794 28504 49319 49319 -0.1526360719922195 NDYPGFNV 8 Unmodified _NDYPGFNV_ 0 0 0 REV__ENSG00000155833|ENST00000374798|CYLC2 REV__ENSG00000155833|ENST00000374798|CYLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.405029296875 1 925.405023 924.397747 0.39049 0.00036136 0.16007 0.00014813 0.55056 0.00050949 925.4048075287109 82.318 0.48947 76.143 75.9 76.39 -6.1757 41 26 2 0 0 0 0.57045 1 53945 53945 28.487 0 1 11813000 + 41913 21291 27795 28505 49320 49320 -0.06747640441699332 NEAIEQGTID 10 Unmodified _NEAIEQGTID_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST nc|ENSG00000151914|Q03001-3|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2575073242188 2 545.256568 1088.49858 -0.487 -0.00026554 0.4172 0.00022748 -0.0698 -3.8059E-05 545.2567519831654 34.301 0.47331 34.301 34.123 34.597 0 72 24 5 0 0 0 0.56348 1 17992 17992 13.042 1.5478 1 126820000 41914 16275 27796 28506 49321 49321 -0.0421265324948763 NEAIVKRHI 9 Unmodified _NEAIVKRHI_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.2786865234375 2 540.31964 1078.62473 0.66196 0.00035767 0.65873 0.00035593 1.3207 0.0007136 540.3201335125609 22.177 0.28822 19.442 19.274 19.562 -2.7348 21 15 2 0 0 0 0.15363 1 11943 11943 19.257 8.4331 1 2044100 41915 8675 27797 28507 49322 49322 0.0885594283708997 NEALIEFIY 9 Unmodified _NEALIEFIY_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.28759765625 2 556.28714 1110.55973 NaN NaN NaN NaN NaN NaN NaN 62.351 1 62.351 61.851 62.851 0 0 0 0 0.56093 1 34775 34775 13.906 2.7916 1 + 41916 19463 27798 28508 49323 49323 0.00886903520586202 NEALSTERAC 10 Unmodified _NEALSTERAC_ 0 0 0 REV__nc|ENSG00000156970|O60566-2|BUB1B REV__nc|ENSG00000156970|O60566-2|BUB1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.80078125 2 547.250763 1092.48697 0.2627 0.00014376 -2.1175 -0.0011588 -1.8548 -0.001015 547.2492586529493 63.016 0.46626 63.016 62.655 63.122 0 32 19 2 0 0 0 0.22636 1 35027 35027 17.113 7.039 1 1820200 + 41917 21355 27799 28509 49324 49324 -0.055571735445028025 NEARSKMDVAQ 11 Unmodified _NEARSKMDVAQ_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.8732604980469 3 416.871555 1247.59283 -0.31241 -0.00013024 2.0127 0.00083904 1.7003 0.0007088 416.8726000087292 31.393 0.22607 31.423 31.296 31.522 0.030106 23 9 3 0 0 0 0.39848 1 16427 16427 17.572 1.8333 1 5905400 41918 3003 27800 28510 49325 49325 -0.02105837699014046 NECSSDSYESQ 11 Unmodified _NECSSDSYESQ_ 0 0 0 REV__ENSG00000113916|ENST00000406870|BCL6 REV__ENSG00000113916|ENST00000406870|BCL6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.71875 2 624.719689 1247.42483 NaN NaN NaN NaN NaN NaN NaN 8.4973 1 8.4057 7.9057 8.9057 -0.09156 0 0 0 0.94313 1 4168 4168 0.26902 0 1 + 41919 18896 27801 28511 49326 49326 -0.18898989474155314 NECWLAFEETR 11 Unmodified _NECWLAFEETR_ 0 0 0 REV__ENST00000490191.5_1_6:33240007-33240325:+|nuORF REV__ENST00000490191.5_1_6:33240007-33240325:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3135375976562 2 699.311351 1396.60815 NaN NaN NaN NaN NaN NaN NaN 53.332 1 53.332 52.832 53.832 0 0 0 0 0.68775 1 29553 29553 17.443 4.4002 1 + 41920 27876 27802 28512 49327 49327 -0.07428970901855791 NECYRATFR 9 Unmodified _NECYRATFR_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000522029.5_1_5:179311495-179320216:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1813049316406 3 387.181952 1158.52403 -0.021973 -8.5074E-06 -1.2691 -0.00049136 -1.291 -0.00049987 387.18131788262036 64.756 0.33423 64.756 64.601 64.936 0 35 15 3 0 0 0 0.58145 1 36147 36147 2.4985 0.21571 1 1821900 41921 9930 27803 28513 49328 49328 -0.04889457208082604 NEDESLVDGIM 11 Unmodified _NEDESLVDGIM_ 0 0 0 REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8477783203125 3 407.848304 1220.52308 0.2192 8.9399E-05 -1.9592 -0.00079907 -1.74 -0.00070967 407.8474351229561 31.456 0.26693 31.353 31.214 31.481 -0.10269 19 10 3 0 0 0 0.50515 1 16348 16348 9.2438 2.6203 1 3958100 + 41922 28877 27804 28514 49329 49329 -0.07835761158298737 NEDESLVDGIM 11 Unmodified _NEDESLVDGIM_ 0 0 0 REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.848304 1220.52308 0.043591 1.7779E-05 -2.2649 -0.00092372 -2.2213 -0.00090594 407.8474888046072 31.466 0.36626 31.466 31.234 31.6 0 0.056365 -0.00011999 NaN 9.2438 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7464400 + 41923 28877 27804 28514 -0.07835761158298737 NEDESLVDGIM 11 Unmodified _NEDESLVDGIM_ 0 0 0 REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF REV__ENST00000563541.1_1_16:89789946-89799821:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 407.848304 1220.52308 0.2192 8.9399E-05 -1.9592 -0.00079907 -1.74 -0.00070967 407.8474351229561 31.456 0.26693 31.353 31.214 31.481 -0.10269 -0.056365 0.00025395 NaN 9.2438 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3958100 + 41924 28877 27804 28514 -0.07835761158298737 NEEDVWSMLF 10 Unmodified _NEEDVWSMLF_ 0 0 0 REV__ENSG00000099910|ENST00000328879|KLHL22 REV__ENSG00000099910|ENST00000328879|KLHL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.1885375976562 3 423.85339 1268.53834 0.43231 0.00018323 1.2688 0.0005378 1.7011 0.00072103 424.18826552043424 68.133 0.3343 68.158 67.983 68.318 0.025146 26 16 2 0 0 0 0.713 1 37442 37442 1.4551 0 1 7004000 + 41925 17991 27805 28515 49330 49330 -0.08518849570464226 NEEEEEVD 8 Unmodified _NEEEEEVD_ 0 0 0 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.6893615722656 2 496.688184 991.361815 0.65771 0.00032668 0.48389 0.00024034 1.1416 0.00056702 496.6884217532468 42.41 0.30666 42.41 42.279 42.586 0 24 14 2 0 0 0 0.80311 1 22983 22983 4.756 0 1 2017000 41926 16226 27806 28516 49331 49331 -0.1342118719987866 NEEGETTSHL 10 Unmodified _NEEGETTSHL_ 0 0 0 ENSG00000168496|ENST00000305885|FEN1;ENST00000401028.2_1_1:91793937-91794252:+|nuORF ENSG00000168496|ENST00000305885|FEN1 ENSG00000168496|ENST00000305885|FEN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7422485351562 2 558.743825 1115.4731 NaN NaN NaN NaN NaN NaN NaN 61.176 1 61.176 60.676 61.676 0 0 0 0 0.99091 1 34113 34113 1.6526 0.45928 1 41927 7771 27807 28517 49332 49332 -0.08002127771942469 NEEMEDERA 9 Unmodified _NEEMEDERA_ 0 0 0 REV__nc|ENSG00000092531|O00161-2|SNAP23 REV__nc|ENSG00000092531|O00161-2|SNAP23 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8810424804688 3 374.817115 1121.42952 0.1417 5.3112E-05 3.452 0.0012939 3.5937 0.001347 374.81851198139555 39.369 0.22537 39.369 39.263 39.488 0 14 10 2 0 0 0 0.1986 1 21066 21066 13.615 0.74226 1 818830 + 41928 17913 27808 28518 49333 49333 -0.12634060540722203 NEEREKFRSI 10 Unmodified _NEEREKFRSI_ 0 0 0 REV__ENSG00000111530|ENST00000545606|CAND1 REV__ENSG00000111530|ENST00000545606|CAND1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7414245605469 3 436.561597 1306.66296 0.81324 0.00035503 -0.13394 -5.8471E-05 0.67931 0.00029656 436.56146047158876 68.697 0.19209 68.722 68.601 68.793 0.025146 14 8 2 0 0 0 0.2384 1 37752 37752 1.4551 0.75745 1 2456000 + 41929 18754 27809 28519 49334 49334 0.021897839610801384 NEEWYEAF 8 Unmodified _NEEWYEAF_ 0 0 0 REV__nc|ENSG00000196277|Q14831-5|GRM7 REV__nc|ENSG00000196277|Q14831-5|GRM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2244262695312 2 544.221997 1086.42944 NaN NaN NaN NaN NaN NaN NaN 86.256 1 86.256 85.756 86.756 0 0 0 0 0.97444 1 47782 47782 2.8892 0.58649 1 + 41930 23811 27810 28520 49335 49335 -0.11031692478422883 NEFGRTFCDS 10 Unmodified _NEFGRTFCDS_ 0 0 0 ENSG00000196693|ENST00000359467|ZNF33B ENSG00000196693|ENST00000359467|ZNF33B ENSG00000196693|ENST00000359467|ZNF33B MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2442016601562 2 588.242938 1174.47132 0.98679 0.00058047 -1.8007 -0.0010592 -0.81386 -0.00047875 588.2416961897026 32.311 0.38627 28.455 28.284 28.67 -3.8562 36 22 2 0 0 0 0.5933 1 18509 18509 11.495 0.67078 1 18292000 41931 9862 27811 28521 49336 49336 -0.10893460061538462 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6854858398438 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 3.3967 1 3.3247 2.8247 3.8247 -0.072029 0 0 0 0.9435 1 1671 1671 0 0 1 41932 9229 27812 28522 49337 49337 -0.19053062324701386 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6866455078125 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 4.8077 1 4.7348 4.2348 5.2348 -0.072869 0 0 0 0.9435 1 2376 2376 0 0 1 41933 9229 27812 28522 49338 49338 -0.19053062324701386 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.687255859375 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 5.2785 1 5.201 4.701 5.701 -0.07749 0 0 0 0.9435 1 2605 2605 0 0 1 41934 9229 27812 28522 49339 49339 -0.19053062324701386 NEGSDDDGNEG 11 Unmodified _NEGSDDDGNEG_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2;ENST00000556808.1_1_X:53114705-53115656:+|nuORF ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.6864624023438 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 0.2727 1 0.25064 -0.24936 0.75064 -0.022065 0 0 0 0.9435 1 146 146 0 0 1 41935 9229 27812 28522 49340 49340 -0.19053062324701386 NEGTEMEVPA 10 Unmodified _NEGTEMEVPA_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;nc|ENSG00000263001|P78347-5|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7337646484375 2 538.731871 1075.44919 NaN NaN NaN NaN NaN NaN NaN 45.978 1 45.978 45.478 46.478 0 0 0 0 0.76313 1 25105 25105 13.906 0.86358 1 41936 10851 27813 28523 49341 49341 -0.08551684529970771 NEHQGLHSMI 10 Unmodified _NEHQGLHSMI_ 0 0 0 REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2747802734375 2 583.274572 1164.53459 0.16158 9.4244E-05 -0.43145 -0.00025166 -0.26988 -0.00015741 583.2742572141415 66.718 0.24823 66.235 66.046 66.294 -0.48323 15 11 2 0 0 0 0.60623 1 36395 36395 10.824 1.4408 1 1152600 + 41937 23280 27814 28524 49342 49342 -0.041094745536383925 NEHQGLHSMI 10 Unmodified _NEHQGLHSMI_ 0 0 0 REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.274572 1164.53459 0.23494 0.00013704 -0.75016 -0.00043755 -0.51522 -0.00030051 583.2742601066932 66.135 0.21896 66.135 65.976 66.195 0 -0.050323 -0.00029717 NaN 10.824 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 572960 + 41938 23280 27814 28524 -0.041094745536383925 NEHQGLHSMI 10 Unmodified _NEHQGLHSMI_ 0 0 0 REV__ENSG00000182578|ENST00000675795|CSF1R REV__ENSG00000182578|ENST00000675795|CSF1R MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.274572 1164.53459 0.16158 9.4244E-05 -0.43145 -0.00025166 -0.26988 -0.00015741 583.2742572141415 66.718 0.24823 66.235 66.046 66.294 -0.48323 0.050323 7.4625E-05 NaN 10.824 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1152600 + 41939 23280 27814 28524 -0.041094745536383925 NEIAYLNKL 9 Unmodified _NEIAYLNKL_ 0 0 0 nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK nc|ENSG00000112742|P33981-2|TTK nc|ENSG00000112742|P33981-2|TTK MSMS AL20221201_MKP_PDAC_01 4 539.2947998046875 2 539.300581 1076.58661 NaN NaN NaN NaN NaN NaN NaN 98.99 1 92.814 92.314 93.314 -6.1757 0 0 0 0.46232 1 65799 65799 17.113 0.1706 1 41940 2916 27815 28525 49343 49343 0.05138012131760661 NEINPDYYL 9 Unmodified _NEINPDYYL_ 0 0 0 REV__ENSG00000117408|ENST00000372343|IPO13 REV__ENSG00000117408|ENST00000372343|IPO13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.763916015625 2 570.764029 1139.5135 1.0005 0.00057107 -1.1815 -0.00067438 -0.181 -0.00010331 570.7631462101285 54.717 0.43817 54.717 54.352 54.79 0 39 18 3 0 0 0 0.25681 1 30353 30353 19.257 0 1 2838900 + 41941 19102 27816 28526 49344 49344 -0.05067161381521146 NEIRWLLIVYA 11 Unmodified _NEIRWLLIVYA_ 0 0 0 ENSG00000231738|ENST00000532498|TSPAN19 ENSG00000231738|ENST00000532498|TSPAN19 ENSG00000231738|ENST00000532498|TSPAN19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.7109375 3 463.934484 1388.78162 0.87111 0.00040414 0.47282 0.00021936 1.3439 0.0006235 463.93598918897356 39.118 0.18245 34.667 34.552 34.734 -4.4509 16 11 2 0 0 0 0.3012 1 23097 23097 7.846 5.2148 1 6527800 41942 10620 27817 28527 49345 49345 0.10278182936781377 NEKERERDRDR 11 Unmodified _NEKERERDRDR_ 0 0 0 REV__ENSG00000134186|ENST00000370025|PRPF38B REV__ENSG00000134186|ENST00000370025|PRPF38B MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.4405212402344 4 376.440918 1501.73456 1.6899 0.00063615 -0.5045 -0.00018992 1.1854 0.00044623 376.6915111704092 21.026 0.28585 18.333 18.186 18.471 -2.693 24 15 2 0 0 0 0.7326 1 11235 11235 0.40827 0 1 2856900 + 41943 19956 27818 28528 49346 49346 0.003766716476320653 NEKGEKAST 9 Unmodified _NEKGEKAST_ 0 0 0 ENSG00000183035|ENST00000329312|CYLC1 ENSG00000183035|ENST00000329312|CYLC1 ENSG00000183035|ENST00000329312|CYLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4783325195312 1 963.474165 962.466889 0.33818 0.00032583 3.6732 0.003539 4.0114 0.0038648 963.4777528857092 67.082 0.2299 67.082 66.971 67.201 0 17 9 2 0 0 0 0.56345 1 37384 37384 3.5965 0.60125 1 1000100 41944 9111 27819 28529 49347 49347 -0.01584601212812231 NEKQNYRLY 9 Unmodified _NEKQNYRLY_ 0 0 0 nc|ENSG00000154188|Q15389-2|ANGPT1;ENSG00000154188|ENST00000517746|ANGPT1 nc|ENSG00000154188|Q15389-2|ANGPT1 nc|ENSG00000154188|Q15389-2|ANGPT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.6559448242188 2 614.309469 1226.60439 NaN NaN NaN NaN NaN NaN NaN 92.145 1 91.664 91.164 92.164 -0.48092 0 0 0 0.85798 1 50368 50368 0.52476 0 1 41945 6304 27820 28530 49348 49348 0.00014727386610502435 NEKSVSVLF 9 Unmodified _NEKSVSVLF_ 0 0 0 REV__nc|ENSG00000172046|O94966|USP19 REV__nc|ENSG00000172046|O94966|USP19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7823791503906 2 511.779482 1021.54441 0.68343 0.00034977 2.0293 0.0010385 2.7127 0.0013883 511.77972400448925 53.108 0.31984 47.303 47.03 47.35 -5.8042 38 17 3 0 0 0 0.08691 1 33553 33553 36.127 3.3413 1 82584000 + 41946 29782 27821 28531 49349 49349 0.034500367233931684 NELCKDFCNRY 11 Unmodified _NELCKDFCNRY_ 0 0 0 ENSG00000165495|ENST00000298282|PKNOX2;nc|ENSG00000165495|Q96KN3-2|PKNOX2;ENST00000526955.1_1_11:125255606-125280135:+|nuORF ENSG00000165495|ENST00000298282|PKNOX2 ENSG00000165495|ENST00000298282|PKNOX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.806884765625 2 702.805379 1403.59621 NaN NaN NaN NaN NaN NaN NaN 62.323 1 62.323 61.823 62.823 0 0 0 0 0.71476 1 34760 34760 16.149 0 1 41947 7347 27822 28532 49350 49350 -0.08944910916670779 NELDVQKMHI 10 Unmodified _NELDVQKMHI_ 0 0 0 REV__ENSG00000152952|ENST00000282903|PLOD2 REV__ENSG00000152952|ENST00000282903|PLOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8141479492188 2 613.81353 1225.61251 0.9206 0.00056508 -0.51306 -0.00031492 0.40754 0.00025015 613.8130207105737 92.18 1.9376 86.004 84.994 86.932 -6.1757 459 115 6 0 0 0 0.60623 1 61244 61244 10.824 10.824 1 3726699999.9999995 + 41948 21143 27823 28533 49351 49351 0.00872538311750759 NELFTKYY 8 Unmodified _NELFTKYY_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7457885742188 2 539.266207 1076.51786 0.8519 0.0004594 -0.07722 -4.1642E-05 0.77468 0.00041776 539.2660259315901 34.866 0.30028 30.771 30.616 30.916 -4.0951 23 17 2 0 0 0 8.7369 1 20209 20209 28.487 6.7402 1 5260200 + 41949 21769 27824 28534 49352 49352 -0.017336521679453654 NELHSHFLGSR 11 Unmodified _NELHSHFLGSR_ 0 0 0 REV__nc|ENSG00000106003|Q8NES3-2|LFNG REV__nc|ENSG00000106003|Q8NES3-2|LFNG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8846740722656 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 33.651 1 33.651 33.151 34.151 0 0 0 0 0.94293 1 17669 17669 0.40827 0.13925 1 + 41950 18481 27825 28535 49353 49353 0.0010893450946696248 NELIVDRYL 9 Unmodified _NELIVDRYL_ 0 0 0 REV__ENSG00000120784|ENST00000684514|ZFP30 REV__ENSG00000120784|ENST00000684514|ZFP30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.314697265625 2 567.811313 1133.60807 0.37125 0.0002108 2.452 0.0013923 2.8233 0.0016031 568.3150087339646 78.588 0.44216 72.412 72.089 72.531 -6.1757 34 27 2 0 0 0 0.069655 2 51457 51328;51457 40.239 1.3461 1 16169000 + 41951 19261 27826 28536 49354;49355 49355 0.04661397160452907 NELKFYQGF 9 Unmodified _NELKFYQGF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8073120117188 2 573.284931 1144.55531 0.29465 0.00016892 -1.591 -0.00091208 -1.2963 -0.00074316 573.283730829907 79.346 0.26556 79.401 79.284 79.55 0.054977 19 9 3 0 0 0 0.18118 1 43807 43807 9.3831 0 1 1588800 41952 10766 27827 28537 49356 49356 -0.011185609023186771 NELKLADW 8 Unmodified _NELKLADW_ 0 0 0 ENSG00000182836|ENST00000377801|PLCXD3 ENSG00000182836|ENST00000377801|PLCXD3 ENSG00000182836|ENST00000377801|PLCXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7579956054688 2 494.758549 987.502546 -0.43648 -0.00021595 0.32554 0.00016106 -0.11095 -5.4892E-05 494.7591785026277 26.533 0.18626 26.533 26.428 26.614 0 20 8 3 0 0 0 0.76266 1 13654 13654 11.64 0 1 1438200 41953 9092 27828 28538 49357 49357 0.008294810348502324 NELNRCLIIF 10 Unmodified _NELNRCLIIF_ 0 0 0 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.8335571289062 2 617.834265 1233.65398 2.3805 0.0014707 -1.697 -0.0010484 0.68351 0.00042229 617.8332408604834 95.375 0.39858 95.38 95.133 95.532 0.0041504 42 14 4 0 0 0 0.32072 2 52928 52928;53028 26.268 5.8145 1 3585500 + 41954 21567 27829 28539 49358;49359 49358 0.046497190710624636 NELQELLPG 9 Unmodified _NELQELLPG_ 0 0 0 REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7695617675781 2 506.769114 1011.52368 0.10532 5.3372E-05 2.04 0.0010338 2.1454 0.0010872 506.76991926943924 30.743 0.19395 30.641 30.523 30.717 -0.10269 13 7 2 0 0 0 0.1773 1 15935 15935 25.399 2.663 1 2440700 + 41955 24472 27830 28540 49360 49360 0.018374463437339728 NELQELLPG 9 Unmodified _NELQELLPG_ 0 0 0 REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.769114 1011.52368 -0.11133 -5.6417E-05 1.6354 0.00082875 1.524 0.00077233 506.77001960200306 30.808 0.16157 30.808 30.67 30.831 0 0.083494 -0.00018275 NaN 25.399 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1446800 + 41956 24472 27830 28540 0.018374463437339728 NELQELLPG 9 Unmodified _NELQELLPG_ 0 0 0 REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF REV__ENST00000503687.2_2_7:66094097-66236887:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.769114 1011.52368 0.10532 5.3372E-05 2.04 0.0010338 2.1454 0.0010872 506.76991926943924 30.743 0.19395 30.641 30.523 30.717 -0.10269 -0.083494 0.00022742 NaN 25.399 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2440700 + 41957 24472 27830 28540 0.018374463437339728 NELTYNNLP 9 Unmodified _NELTYNNLP_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.264892578125 2 539.264196 1076.51384 0.41307 0.00022276 -3.3402 -0.0018012 -2.9271 -0.0015785 539.2638357988163 52.159 0.22657 46.424 46.304 46.53 -5.7345 22 14 2 0 0 0 0.024882 1 32834 32834 58.679 10.333 1 46656000 41958 1357 27831 28541 49361 49361 -0.021357416616638147 NELVDLPIL 9 Unmodified _NELVDLPIL_ 0 0 0 REV__ENSG00000144681|ENST00000273183|STAC REV__ENSG00000144681|ENST00000273183|STAC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2967529296875 2 513.297507 1024.58046 0.24266 0.00012456 0.13599 6.9802E-05 0.37865 0.00019436 513.297483359486 82.492 0.28777 82.492 82.41 82.697 0 16 11 2 0 0 0 0.52844 1 45801 45801 5.7319 0.43497 1 326800 + 41959 20726 27832 28542 49362 49362 0.06915493900260117 NELVDLPIL 9 Unmodified _NELVDLPIL_ 0 0 0 REV__ENSG00000144681|ENST00000273183|STAC REV__ENSG00000144681|ENST00000273183|STAC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.297507 1024.58046 0.24266 0.00012456 0.13599 6.9802E-05 0.37865 0.00019436 513.297483359486 82.492 0.28777 82.492 82.41 82.697 0 -0.058842 0.00017567 NaN 5.7319 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 326800 + 41960 20726 27832 28542 0.06915493900260117 NELVEIDY 8 Unmodified _NELVEIDY_ 0 0 0 REV__ENSG00000197410|ENST00000357232|DCHS2 REV__ENSG00000197410|ENST00000357232|DCHS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2582397460938 2 497.740022 993.465492 0.24675 0.00012282 -1.5273 -0.00076022 -1.2806 -0.00063741 497.7387119554183 61.664 0.20394 61.664 61.548 61.751 0 12 8 2 0 0 0 8.7369 1 34378 34378 7.2892 0.56607 1 756170 + 41961 23924 27833 28543 49363 49363 -0.031502353015753215 NELVIVPPV 9 Unmodified _NELVIVPPV_ 0 0 0 REV__ENST00000558045.2_1_14:24608567-24608675:-|nuORF REV__ENST00000558045.2_1_14:24608567-24608675:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.0892333984375 1 979.582259 978.574983 0.28839 0.0002825 0.74196 0.00072681 1.0303 0.0010093 979.581747718861 95.165 0.16264 94.797 94.698 94.86 -0.36814 9 7 2 0 0 0 0.21242 1 51995 51995 5.2307 1.6342 1 270100 + 41962 18115 27834 28544 49364 49364 0.084838151084341 NEMCLNGGQP 10 Unmodified _NEMCLNGGQP_ 0 0 0 REV__ENST00000444388.5_1_22:27122637-27130274:+|nuORF REV__ENST00000444388.5_1_22:27122637-27130274:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7199096679688 2 531.720784 1061.42701 -0.26272 -0.00013969 -2.0531 -0.0010917 -2.3158 -0.0012314 531.7196495086977 41.266 0.32236 41.266 41.082 41.404 0 34 15 3 0 0 0 0.63399 1 22257 22257 9.3831 2.0939 1 5722000 + 41963 27121 27835 28545 49365 49365 -0.10124187479391367 NEPDNDDDDDD 11 Unmodified _NEPDNDDDDDD_ 0 0 0 REV__nc|ENSG00000085224|P46100-6|ATRX REV__nc|ENSG00000085224|P46100-6|ATRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.6961059570312 2 639.697465 1277.38038 0.1732 0.00011079 -0.27716 -0.0001773 -0.10397 -6.6506E-05 639.6972608951424 56.933 0.23048 56.933 56.813 57.043 0 24 9 4 0 0 0 0.7453 1 31662 31662 0 0 1 1770000 + 41964 17744 27836 28546 49366 49366 -0.24721722086633235 NEPFSPGPAF 10 Unmodified _NEPFSPGPAF_ 0 0 0 ENSG00000116981|ENST00000235628|NT5C1A ENSG00000116981|ENST00000235628|NT5C1A ENSG00000116981|ENST00000235628|NT5C1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8135375976562 2 531.748182 1061.48181 0.61715 0.00032817 -0.066116 -3.5157E-05 0.55103 0.00029301 531.7483105507565 73.142 0.37416 72.666 72.407 72.781 -0.47588 28 16 2 0 0 0 0.23227 1 40072 40072 10.824 1.4765 1 913750 41965 3271 27837 28547 49367 49367 -0.046471093448190004 NEPLVLYI 8 Unmodified _NEPLVLYI_ 0 0 0 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5399169921875 1 960.54006 959.532783 0.30397 0.00029197 -0.70372 -0.00067595 -0.39975 -0.00038398 960.5398459417645 72.987 0.34618 72.987 72.779 73.126 0 24 15 2 0 0 0 0.71527 1 40599 40599 15.847 1.0089 1 537240 41966 2033 27838 28548 49368 49368 0.05139839700041193 NEPNLMLEP 9 Unmodified _NEPNLMLEP_ 0 0 0 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 MSMS AL20221201_MKP_PDAC_01 4 528.7557373046875 2 528.755149 1055.49575 NaN NaN NaN NaN NaN NaN NaN 67.686 1 61.51 61.01 62.01 -6.1757 0 0 0 0.19623 1 44108 44108 31.268 2.1868 1 + 41967 17866 27839 28549 49369 49369 -0.029781999080114474 NEPRESSLLQF 11 Unmodified _NEPRESSLLQF_ 0 0 0 REV__ENSG00000140481|ENST00000398814|CCDC33 REV__ENSG00000140481|ENST00000398814|CCDC33 MSMS AL20221201_MKP_PDAC_01 4 660.334716796875 2 660.333141 1318.65173 NaN NaN NaN NaN NaN NaN NaN 85.138 1 78.963 78.463 79.463 -6.1757 0 0 0 0.63856 1 56054 56054 19.362 3.2128 1 + 41968 20476 27840 28550 49370 49370 0.0051496186695203505 NEPYNKVEVF 10 Unmodified _NEPYNKVEVF_ 0 0 0 REV__nc|ENSG00000131686|P23280-3|CA6 REV__nc|ENSG00000131686|P23280-3|CA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8068237304688 2 619.806228 1237.5979 0.77706 0.00048163 -0.8698 -0.00053911 -0.09274 -5.7481E-05 619.8059301047175 75.375 0.51653 74.898 74.696 75.212 -0.47714 61 27 3 0 0 0 0.42143 1 41215 41215 20.415 4.2654 1 4679000 + 41969 19804 27841 28551 49371 49371 -0.0113921056477011 NEQVQIQAML 10 Unmodified _NEQVQIQAML_ 0 0 0 nc|ENSG00000291164|Q6ZMU1|C3P1 nc|ENSG00000291164|Q6ZMU1|C3P1 nc|ENSG00000291164|Q6ZMU1|C3P1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.915283203125 2 587.300255 1172.58596 NaN NaN NaN NaN NaN NaN NaN 56.112 1 56.044 55.544 56.544 -0.068737 0 0 0 0.7417 1 30512 30512 14.838 1.3304 1 41970 16645 27842 28552 49372 49372 0.00656849420420258 NERRMDSI 8 Unmodified _NERRMDSI_ 0 0 0 REV__ENSG00000255378|ENST00000528972|PRR23D2 REV__ENSG00000255378|ENST00000528972|PRR23D2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2753295898438 2 510.74819 1019.48183 0.31922 0.00016304 2.4014 0.0012265 2.7206 0.0013895 510.7497371722607 63.243 0.30731 63.243 63.008 63.315 0 14 12 2 0 0 0 8.7369 1 35238 35238 5.2307 0 1 812560 + 41971 24533 27843 28553 49373 49373 -0.027134326164514277 NESAVIVAP 9 Unmodified _NESAVIVAP_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.4837646484375 1 899.483273 898.475997 0.29284 0.00026341 0.41036 0.00036911 0.7032 0.00063252 899.4832707000481 53.144 0.22324 53.144 53.039 53.263 0 13 9 2 0 0 0 0.10734 1 29469 29469 32.305 3.2239 1 592740 41972 4951;8967 27844 28554 49374 49374 0.022697921435110402 NESEARRKF 9 Unmodified _NESEARRKF_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.79638671875 2 568.793986 1135.57342 0.69351 0.00039446 0.10519 5.9829E-05 0.79869 0.00045429 568.7944608097736 65.143 0.62758 58.967 58.77 59.398 -6.1757 115 34 5 0 0 0 0.28023 1 42373 42373 18.146 3.3081 1 83054000 41973 7952 27845 28555 49375 49375 0.0110557407235774 NESFKLRNI 9 Unmodified _NESFKLRNI_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MSMS AL20221201_MKP_PDAC_01 4 560.8092041015625 2 560.809105 1119.60366 NaN NaN NaN NaN NaN NaN NaN 95.419 1 89.243 88.743 89.743 -6.1757 0 0 0 0.56093 1 63202 63202 13.906 0.29118 1 41974 641 27846 28556 49376 49376 0.04863932737566756 NESFMKLAAVG 11 Unmodified _NESFMKLAAVG_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.26708984375 2 583.797349 1165.58014 1.0715 0.00062553 -0.46291 -0.00027025 0.60857 0.00035528 583.7969110211745 42.635 0.22318 37.95 37.832 38.055 -4.6846 25 14 2 0 0 0 0.29817 1 25743 25743 8.1555 1.4324 1 12413000 41975 5131 27847 28557 49377 49377 0.003977509087235376 NESFYVAVDEF 11 Unmodified _NESFYVAVDEF_ 0 0 0 REV__nc|ENSG00000182983|Q6ZS27-3|ZNF662 REV__nc|ENSG00000182983|Q6ZS27-3|ZNF662 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.532470703125 3 440.531192 1318.57175 1.1233 0.00049484 0.90496 0.00039866 2.0282 0.0008935 440.53161860330107 41.988 0.35204 37.304 37.125 37.477 -4.6846 56 21 3 0 0 0 0.69316 1 25368 25368 2.2527 0.16672 1 22488000 + 41976 29840 27848 28558 49378 49378 -0.07479524526911518 NESSPCHPF 9 Unmodified _NESSPCHPF_ 0 0 0 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2;nc|ENSG00000178460|Q4G0Z9-4|MCMDC2;ENST00000428734.5_1_8:67786448-67831401:+|nuORF;ENSG00000178460|ENST00000422365|MCMDC2;nc|ENSG00000178460|Q4G0Z9-2|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 nc|ENSG00000178460|Q4G0Z9-3|MCMDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2086791992188 2 509.208366 1016.40218 0.68011 0.00034632 0.71216 0.00036264 1.3923 0.00070896 509.20884143040536 80.304 0.45609 74.129 73.878 74.334 -6.1757 56 26 3 0 0 0 0.30562 1 52604 52604 16.942 2.3606 1 31203000 41977 8754 27849 28559 49379 49379 -0.10536499290446955 NESVNQPC 8 Unmodified _NESVNQPC_ 0 0 0 REV__nc|ENSG00000135164|Q9Y222-4|DMTF1 REV__nc|ENSG00000135164|Q9Y222-4|DMTF1 MSMS AL20221201_MKP_PDAC_01 4 445.6888732910156 2 445.687267 889.359981 NaN NaN NaN NaN NaN NaN NaN 105.52 1 99.347 98.847 99.847 -6.1757 0 0 0 0.97444 1 70703 70703 2.0598 0.21551 1 + 41978 29644 27850 28560 49380 49380 -0.08912474698831829 NETALHLLF 9 Unmodified _NETALHLLF_ 0 0 0 REV__ENST00000367505.6_1_6:146207174-146207270:-|nuORF REV__ENST00000367505.6_1_6:146207174-146207270:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.28515625 2 529.287474 1056.5604 NaN NaN NaN NaN NaN NaN NaN 60.863 1 60.863 60.363 61.363 0 0 0 0 0.84369 1 33942 33942 2.3027 0 1 + 41979 25987 27851 28561 49381 49381 0.034377429602727716 NETKYLEQL 9 Unmodified _NETKYLEQL_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2943725585938 2 569.292953 1136.57135 0.4524 0.00025755 0.22948 0.00013064 0.68188 0.00038819 569.2933123843707 38.186 0.17405 38.186 38.089 38.263 0 17 9 2 0 0 0 0.082934 1 20370 20370 39.95 0 1 10484000 41980 9988 27852 28562 49382 49382 0.008531005438953798 NETLRLVC 8 Unmodified _NETLRLVC_ 0 0 0 REV__nc|ENSG00000118369|Q9P2H5-2|USP35 REV__nc|ENSG00000118369|Q9P2H5-2|USP35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2527770996094 2 474.252577 946.490601 NaN NaN NaN NaN NaN NaN NaN 54.547 1 54.08 53.58 54.58 -0.46664 0 0 0 0.62748 1 29562 29562 32.305 0 1 + 41981 19146 27853 28563 49383 49383 0.015215410200198676 NETQTLLDCI 10 Unmodified _NETQTLLDCI_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2781372070312 2 575.276446 1148.53834 0.31507 0.00018125 0.4363 0.00025099 0.75137 0.00043224 575.2766032059687 72.125 0.65556 72.125 71.883 72.539 0 107 28 5 0 0 0 0.63399 1 40289 40289 9.3831 0 1 122480000 + 41982 29707;21097 27854 28564 49384 49384 -0.02998849570440143 NETQTLLDCI 10 Unmodified _NETQTLLDCI_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2771606445312 2 575.276446 1148.53834 0.76354 0.00043925 0.10468 6.0222E-05 0.86822 0.00049947 575.2763836148133 72.603 0.66266 72.127 71.9 72.563 -0.4761 105 30 5 0 0 0 0.44373 1 39693 39693 19.257 0 1 137160000 + 41983 29707;21097 27854 28564 49385 49385 -0.02998849570440143 NETRGDDDCHR 11 Unmodified _NETRGDDDCHR_ 0 0 0 REV__ENSG00000172466|ENST00000261332|ZNF24 REV__ENSG00000172466|ENST00000261332|ZNF24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8446044921875 3 439.846068 1316.51637 NaN NaN NaN NaN NaN NaN NaN 0.12462 1 0.10255 -0.39745 0.60255 -0.022065 0 0 0 0.9435 1 67 67 0 0 1 + 41984 22651 27855 28565 49386 49386 -0.12922261266339774 NEVILRYET 9 Unmodified _NEVILRYET_ 0 0 0 REV__ENSG00000116350|ENST00000373795|SRSF4 REV__ENSG00000116350|ENST00000373795|SRSF4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7710571289062 2 568.800946 1135.58734 0.33406 0.00019001 0.33599 0.00019111 0.67005 0.00038113 568.8009309077954 70.382 0.069908 69.903 69.844 69.914 -0.47903 4 2 2 0 0 0 0.17331 1 38483 38483 12.241 2.8575 1 458200 + 41985 19039 27856 28566 49387 49387 0.02496806780800398 NEVLWDLL 8 Unmodified _NEVLWDLL_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.267578125 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 70.455 1 69.977 69.477 70.477 -0.47735 0 0 0 0.90769 1 38535 38535 18.135 0 1 + 41986 21641 27857 28567 49388 49388 0.022706516946755073 NEWFWYRRHCF 11 Unmodified _NEWFWYRRHCF_ 0 0 0 ENST00000415794.1_1_3:139212993-139213512:+|nuORF ENST00000415794.1_1_3:139212993-139213512:+|nuORF ENST00000415794.1_1_3:139212993-139213512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 822.369140625 2 822.369869 1642.72519 NaN NaN NaN NaN NaN NaN NaN 103.93 1 103.88 103.38 104.38 -0.048737 0 0 0 0.9435 1 57710 57710 0 0 1 41987 13024 27858 28568 49389 49389 -0.07046768171585427 NEYFLFEF 8 Unmodified _NEYFLFEF_ 0 0 0 ENST00000325076.9_1_20:34190424-34191756:-|nuORF ENST00000325076.9_1_20:34190424-34191756:-|nuORF ENST00000325076.9_1_20:34190424-34191756:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2549438476562 2 554.752933 1107.49131 0.48358 0.00026827 -2.4717 -0.0013712 -1.9881 -0.0011029 554.7516249859044 88.693 0.25215 88.693 88.507 88.759 0 16 12 2 0 0 0 0.80676 1 49043 49043 2.5775 0 1 254940 41988 11810 27859 28569 49390 49390 -0.05813341059274535 NEYNTLINES 10 Unmodified _NEYNTLINES_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7813110351562 2 598.775125 1195.5357 -0.15159 -9.0769E-05 3.8842 0.0023257 3.7326 0.002235 598.7800921899452 56.578 0.36257 56.578 56.322 56.685 0 37 15 5 0 0 0 0.48505 1 31515 31515 17.113 0 1 3209600 + 41989 29707;21097 27860 28570 49391 49391 -0.054249817037543835 NFAMLQNA 8 Unmodified _NFAMLQNA_ 0 0 0 REV__nc|ENSG00000135903|P23760-4|PAX3 REV__nc|ENSG00000135903|P23760-4|PAX3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 454.2409973144531 2 454.71837 907.422187 1.0534 0.00047901 3.1919 0.0014514 4.2453 0.0019304 454.7178176140704 90.007 0.30577 83.831 83.702 84.008 -6.1757 26 16 2 0 0 0 8.7369 1 59344 59344 19.439 1.304 1 5549300 + 41990 20107 27861 28571 49392 49392 -0.035227035598495604 NFCFPKVMI 9 Unmodified _NFCFPKVMI_ 0 0 0 ENST00000355619.9_1_13:77579704-77579869:-|nuORF ENST00000355619.9_1_13:77579704-77579869:-|nuORF ENST00000355619.9_1_13:77579704-77579869:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.3015747070312 2 549.777373 1097.54019 0.04504 2.4762E-05 -0.49456 -0.0002719 -0.44952 -0.00024714 549.7772036698369 85.366 0.35362 79.19 79.008 79.361 -6.1757 41 22 2 0 0 0 0.18521 1 56342 56342 16.942 6.8684 1 24089000 41991 12078 27862 28572 49393 49393 -0.0046746729553888144 NFDDYTVNL 9 Unmodified _NFDDYTVNL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7491455078125 2 550.748379 1099.4822 0.30094 0.00016574 0.27678 0.00015244 0.57773 0.00031818 550.7486226532062 65.476 0.49146 65.476 65.247 65.738 0 57 19 4 0 0 0 0.011968 2 36570 36472;36570 74.929 62.397 1 22759000 41992 10085 27863 28573 49394;49395 49395 -0.06355734415615188 NFDDYTVNL 9 Unmodified _NFDDYTVNL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.749267578125 2 550.748379 1099.4822 0.10985 6.0498E-05 1.4276 0.00078623 1.5374 0.00084673 550.749431478439 66.042 0.35033 65.559 65.361 65.711 -0.48323 23 16 2 0 0 0 0.044011 1 36044 36044 47.749 35.217 1 4066500 41993 10085 27863 28573 49396 49396 -0.06355734415615188 NFDDYTVNL 9 Unmodified _NFDDYTVNL_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7472534179688 2 550.748379 1099.4822 0.79424 0.00043743 -1.3838 -0.00076212 -0.58955 -0.00032469 550.7475665793611 73.568 0.53942 67.392 67.12 67.66 -6.1757 46 26 2 0 0 0 0.028475 3 48008 48008;48116;48230 56.177 43.645 1 39899000 41994 10085 27863 28573 49397;49398;49399 49397 -0.06355734415615188 NFDEILRVV 9 Unmodified _NFDEILRVV_ 0 0 0 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 ENSG00000117592|ENST00000340385|PRDX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8056640625 2 552.806031 1103.59751 0.47806 0.00026428 -0.47325 -0.00026162 0.0048096 2.6588E-06 552.8059538383205 79.017 0.3363 78.531 78.349 78.686 -0.48596 24 14 2 0 0 0 0.14859 1 43292 43292 36.506 22.6 1 1175700 41995 3318 27864 28574 49400 49400 0.04985414506040797 NFDESLNSL 9 Unmodified _NFDESLNSL_ 0 0 0 nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27 nc|ENSG00000165115|Q86VH2-3|KIF27 nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7413940429688 2 519.740554 1037.46655 0.46879 0.00024365 -0.59665 -0.0003101 -0.12786 -6.6453E-05 519.7402215012077 58.293 0.45255 58.293 58.058 58.511 0 27 17 2 0 0 0 0.1773 1 32439 32439 25.399 10.818 1 2451500 41996 7294 27865 28575 49401 49401 -0.050680209326628756 NFDKIRVWL 9 Unmodified _NFDKIRVWL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5611267089844 3 397.560869 1189.66078 0.53897 0.00021427 0.52765 0.00020977 1.0666 0.00042405 397.56105297545776 66.895 0.23578 66.913 66.793 67.029 0.018036 26 10 3 0 0 0 0.18144 1 36699 36699 24.991 16.835 1 5241300 41997 7176 27866 28576 49402 49402 0.07353400013948885 NFDKIRVWL 9 Unmodified _NFDKIRVWL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8384399414062 2 595.837665 1189.66078 0.74658 0.00044484 0.2486 0.00014813 0.99518 0.00059297 595.8378316124096 94.047 0.16383 87.871 87.769 87.932 -6.1757 12 8 2 0 0 0 0.0086493 1 62303 62303 71.708 46.309 1 6387100 41998 7176 27866 28576 49403 49403 0.07353400013948885 NFDKIRVWL 9 Unmodified _NFDKIRVWL_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5609130859375 3 397.560869 1189.66078 1.2812 0.00050937 -0.1335 -5.3073E-05 1.1477 0.00045629 397.5607882888387 94.007 0.27543 87.832 87.718 87.993 -6.1757 28 15 2 0 0 0 0.08907 1 62336 62336 35.612 28.135 1 13230000 41999 7176 27866 28576 49404 49404 0.07353400013948885 NFDLTKNYL 9 Unmodified _NFDLTKNYL_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3250122070312 2 564.290214 1126.56587 0.094147 5.3126E-05 1.3543 0.00076422 1.4484 0.00081734 564.2907721358409 60.56 0.36196 60.07 59.887 60.249 -0.48932 42 17 3 0 0 0 0.1735 1 32954 32954 23.79 13.716 1 14661000 42000 840 27867 28577 49405 49405 0.007654217520894235 NFDLTKNYL 9 Unmodified _NFDLTKNYL_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2907104492188 2 564.290214 1126.56587 0.68651 0.00038739 -0.36588 -0.00020646 0.32063 0.00018093 564.2902512132285 66.647 0.80331 60.471 60.177 60.981 -6.1757 63 45 2 0 0 0 0.00065891 1 43390 43390 142.08 91.225 1 27015000 42001 840 27867 28577 49406 49406 0.007654217520894235 NFDNILNSF 9 Unmodified _NFDNILNSF_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2605590820312 2 542.258914 1082.50327 0.22422 0.00012158 0.95393 0.00051728 1.1781 0.00063886 542.2593466657863 88.085 0.33839 88.085 87.972 88.311 0 30 18 2 0 0 0 0.45045 1 48815 48815 10.074 5.7447 1 589650 42002 9509 27868 28578 49407 49407 -0.03467724316078602 NFDNILNSF 9 Unmodified _NFDNILNSF_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.259765625 2 542.258914 1082.50327 0.26346 0.00014286 0.78569 0.00042605 1.0491 0.00056891 542.2594399770483 88.61 0.52577 88.106 87.89 88.416 -0.50423 70 22 5 0 0 0 0.0086722 2 48533 48436;48533 88.954 41.205 1 13097000 42003 9509 27868 28578 49408;49409 49409 -0.03467724316078602 NFDNILNSF 9 Unmodified _NFDNILNSF_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2603149414062 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 75.308 1 74.831 74.331 75.331 -0.47714 0 0 0 0.82396 1 41222 41222 4.756 0 1 42004 9509 27868 28578 49410 49410 -0.03467724316078602 NFDNILNSF 9 Unmodified _NFDNILNSF_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2587280273438 2 542.258914 1082.50327 -0.098999 -5.3683E-05 0.43797 0.00023749 0.33897 0.00018381 542.2591337254436 98.847 0.22839 92.672 92.564 92.793 -6.1757 41 17 3 0 0 0 0.0086722 1 65599 65599 88.954 32.777 1 91750000 42005 9509 27868 28578 49411 49411 -0.03467724316078602 NFDNKYSQR 9 Unmodified _NFDNKYSQR_ 0 0 0 REV__ENSG00000105656|ENST00000262809|ELL REV__ENSG00000105656|ENST00000262809|ELL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2738647460938 2 586.278169 1170.54179 0.38711 0.00022696 -3.05 -0.0017882 -2.6629 -0.0015612 586.27677892757 87.288 0.19608 86.784 86.681 86.877 -0.50423 12 7 2 0 0 0 0.55775 1 47712 47712 3.9444 0 1 409180 + 42006 18445 27869 28579 49412 49412 -0.03666418681586947 NFDRFLLMQ 9 Unmodified _NFDRFLLMQ_ 0 0 0 REV__ENST00000325577.8_1_5:34911808-34914834:-|nuORF REV__ENST00000325577.8_1_5:34911808-34914834:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.2594604492188 2 592.300059 1182.58556 0.31176 0.00018466 0.76026 0.0004503 1.072 0.00063496 592.300543984561 82.044 0.4191 75.868 75.796 76.215 -6.1757 29 22 2 0 0 0 0.12281 1 54013 54013 36.506 12.486 1 8048500 + 42007 25551 27870 28580 49413 49413 0.0015747449119771773 NFDTELSTKEM 11 Unmodified _NFDTELSTKEM_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.8688354492188 3 438.867587 1313.58093 0.8495 0.00037282 1.5369 0.00067449 2.3864 0.0010473 438.86840119650134 43.079 0.32309 38.314 38.096 38.419 -4.7648 38 20 3 0 0 0 0.71728 1 26058 26058 2.6312 0.19645 1 16040000 42008 8367 27871 28581 49414 49414 -0.06331499232919668 NFDTGLQEY 9 Unmodified _NFDTGLQEY_ 0 0 0 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;ENST00000510666.1_1_5:68840710-68849495:+|nuORF;nc|ENSG00000197822|Q16625-5|OCLN;nc|ENSG00000197822|Q16625-4|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7405395507812 2 543.740554 1085.46655 0.20873 0.0001135 0.92437 0.00050262 1.1331 0.00061611 543.7407356754803 50.404 0.3313 50.404 50.209 50.54 0 35 14 3 0 0 0 0.011968 1 27756 27756 74.929 31.071 1 4694900 42009 10007 27872 28582 49415 49415 -0.07276020932658867 NFDTIDQQF 9 Unmodified _NFDTIDQQF_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.25439453125 2 564.253828 1126.4931 0.44017 0.00024837 0.68344 0.00038564 1.1236 0.000634 564.2540057348713 58.145 0.39806 58.145 57.968 58.366 0 43 15 4 0 0 0 0.0090948 2 32433 32323;32433 85.272 64.818 1 21810000 42010 6247 27873 28583 49416;49417 49417 -0.06508332041335052 NFDTIDQQF 9 Unmodified _NFDTIDQQF_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2539672851562 2 564.253828 1126.4931 0.70943 0.0004003 1.6091 0.00090794 2.3185 0.0013082 564.2538281788238 66.482 0.45744 60.306 60.079 60.537 -6.1757 66 25 3 0 0 0 0.022193 1 43246 43246 61.357 44.415 1 32806000 42011 6247 27873 28583 49418 49418 -0.06508332041335052 NFDVLDLHF 9 Unmodified _NFDVLDLHF_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2772216796875 2 560.277106 1118.53966 NaN NaN NaN NaN NaN NaN NaN 92.818 1 92.361 91.861 92.861 -0.4574 0 0 0 0.32622 1 50727 50727 32.305 18.798 1 42012 8855 27874 28584 49419 49419 -0.014868474193917791 NFDVTYNWI 9 Unmodified _NFDVTYNWI_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MSMS AL20221201_MKP_PDAC_01 4 586.2731323242188 2 586.274564 1170.53457 NaN NaN NaN NaN NaN NaN NaN 96.521 1 90.345 89.845 90.845 -6.1757 0 0 0 0.26667 1 63965 63965 26.884 15.243 1 42013 540 27875 28585 49420 49420 -0.043871512820032876 NFDWACLFQL 10 Unmodified _NFDWACLFQL_ 0 0 0 REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.7929077148438 2 628.792066 1255.56958 1.9375 0.0012183 0.080159 5.0403E-05 2.0176 0.0012687 628.7923793967831 93.461 0.35036 93.484 93.27 93.62 0.022987 31 13 3 0 0 0 0.38092 1 51940 51940 22.736 7.4878 1 5911900 + 42014 28509 27876 28586 49421 49421 -0.047982317457126555 NFDWACLFQL 10 Unmodified _NFDWACLFQL_ 0 0 0 REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 628.792066 1255.56958 1.9375 0.0012183 0.080159 5.0403E-05 2.0176 0.0012687 628.7923793967831 93.461 0.35036 93.484 93.27 93.62 0.022987 0.023954 0.00064516 NaN 22.736 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5911900 + 42015 28509 27876 28586 -0.047982317457126555 NFDWACLFQL 10 Unmodified _NFDWACLFQL_ 0 0 0 REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF REV__ENST00000534767.1_1_11:43919588-43920434:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 628.792066 1255.56958 0.38784 0.00024387 -1.8191 -0.0011439 -1.4313 -0.00089999 628.7906366755276 99.611 0.093719 93.436 93.38 93.474 -6.1757 -0.023954 -0.0017434 NaN 22.736 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 14949000 + 42016 28509 27876 28586 -0.047982317457126555 NFENTRESF 9 Unmodified _NFENTRESF_ 0 0 0 ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.84130859375 3 381.84036 1142.49925 NaN NaN NaN NaN NaN NaN NaN 14.943 1 14.912 14.412 15.412 -0.030868 0 0 0 0.85798 1 7305 7305 0.23584 0 1 42017 1662 27877 28587 49422 49422 -0.06629813809809093 NFFFFNTQKM 10 Unmodified _NFFFFNTQKM_ 0 0 0 REV__ENST00000452673.6_1_5:179155715-179155943:+|nuORF REV__ENST00000452673.6_1_5:179155715-179155943:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.5431823730469 3 441.877869 1322.61178 -0.029024 -1.2825E-05 0.76866 0.00033965 0.73964 0.00032683 441.8782135995657 38.451 0.23583 38.165 38.026 38.262 -0.28687 16 10 2 0 0 0 0.23993 1 20237 20237 1.7423 0.28716 1 1332500 + 42018 27222 27878 28588 49423 49423 -0.036622563373384764 NFFRAWNGGF 10 Unmodified _NFFRAWNGGF_ 0 0 0 nc|ENSG00000122378|Q9BRX8-2|PRXL2A;ENSG00000122378|ENST00000606162|PRXL2A nc|ENSG00000122378|Q9BRX8-2|PRXL2A nc|ENSG00000122378|Q9BRX8-2|PRXL2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 405.5379333496094 3 405.861319 1214.56213 0.27557 0.00011185 -2.4426 -0.00099134 -2.167 -0.00087949 405.86029424902165 23.379 0.21235 20.601 20.526 20.738 -2.7784 27 12 3 0 0 0 0.23195 1 12650 12650 12.873 5.7709 1 3759900 42019 3633 27879 28589 49424 49424 -0.03657203231114181 NFFRGRNFL 9 Unmodified _NFFRGRNFL_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8774108886719 3 390.87708 1169.60941 -0.25897 -0.00010123 0.3829 0.00014967 0.12393 4.844E-05 390.8770302955896 51.334 0.41425 51.28 51.007 51.421 -0.053871 48 20 3 0 0 0 0.54444 1 27688 27688 2.7352 0.23671 1 5011900 42020 14604 27880 28590 49425 49425 0.03139076039883548 NFFSPSNG 8 Unmodified _NFFSPSNG_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 869.479248046875 1 869.378808 868.371532 1.0559 0.00091797 3.2497 0.0028252 4.3056 0.0037432 869.3811560698276 101.16 0.12318 94.983 94.923 95.046 -6.1757 13 7 2 0 0 0 8.7369 1 67788 67788 36.127 8.4982 1 52337000 + 42021 27458 27881 28591 49426 49426 -0.06791909613184544 NFFVCPLG 8 Unmodified _NFFVCPLG_ 0 0 0 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 ENSG00000109674|ENST00000264596|NEIL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7217102050781 2 448.720381 895.42621 NaN NaN NaN NaN NaN NaN NaN 31.19 1 31.087 30.587 31.587 -0.10269 0 0 0 0.9706 1 16206 16206 6.3541 0 1 42022 2663 27882 28592 49427 49427 -0.025686140661150603 NFFVLRRAC 9 Unmodified _NFFVLRRAC_ 0 0 0 REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687 REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5537109375 3 375.871049 1124.59132 0.20994 7.8912E-05 1.1255 0.00042303 1.3354 0.00050195 375.87128634821863 48.936 0.33971 48.892 48.753 49.093 -0.04369 26 16 2 0 0 0 0.209 1 26387 26387 4.5289 0 1 1671100 + 42023 20630 27883 28593 49428 49428 0.03400617793522542 NFGAKPFK 8 Unmodified _NFGAKPFK_ 0 0 0 ENSG00000159579|ENST00000394420|RSPRY1;ENST00000564530.5_1_16:57254621-57272884:+|nuORF;ENST00000563073.1_1_16:57258382-57272884:+|nuORF ENSG00000159579|ENST00000394420|RSPRY1 ENSG00000159579|ENST00000394420|RSPRY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7523193359375 2 454.75307 907.491587 1.328 0.00060392 -0.095717 -4.3528E-05 1.2323 0.0005604 454.752900216546 49.756 0.29731 49.707 49.568 49.865 -0.048828 44 14 4 0 0 0 0.63229 1 26863 26863 23.148 2.2772 1 12457000 42024 6661 27884 28594 49429 49429 0.03414123451238993 NFGFCCHCC 9 Unmodified _NFGFCCHCC_ 0 0 0 chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.160888671875 2 517.160993 1032.30743 NaN NaN NaN NaN NaN NaN NaN 4.2582 1 4.1853 3.6853 4.6853 -0.072869 0 0 0 0.8622 1 2106 2106 0 0 1 42025 109 27885 28595 49430 49430 -0.20742795629303146 NFGFSKQMHF 10 Unmodified _NFGFSKQMHF_ 0 0 0 ENST00000541157.5_1_11:94212014-94225979:-|nuORF ENST00000541157.5_1_11:94212014-94225979:-|nuORF ENST00000541157.5_1_11:94212014-94225979:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.7893676757812 2 621.789858 1241.56516 0.59433 0.00036955 0.44801 0.00027857 1.0423 0.00064812 621.789454881146 78.966 0.65627 79.021 78.707 79.363 0.054977 56 25 4 0 0 0 0.63399 1 43611 43611 9.3831 0 1 12191000 42026 15042 27886 28596 49431 49431 -0.045956961686215436 NFGTTSEGFRF 11 Unmodified _NFGTTSEGFRF_ 0 0 0 REV__ENSG00000153201|ENST00000283195|RANBP2 REV__ENSG00000153201|ENST00000283195|RANBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5325622558594 3 421.531527 1261.57275 NaN NaN NaN NaN NaN NaN NaN 55.956 1 55.887 55.387 56.387 -0.068737 0 0 0 0.82644 1 30420 30420 5.8681 1.462 1 + 42027 21158 27887 28597 49432 49432 -0.04757265367334185 NFHGQAQW 8 Unmodified _NFHGQAQW_ 0 0 0 ENST00000209875.8_1_12:54634211-54634445:-|nuORF ENST00000209875.8_1_12:54634211-54634445:-|nuORF ENST00000209875.8_1_12:54634211-54634445:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2252197265625 2 494.225208 986.435863 0.51444 0.00025425 -0.3536 -0.00017476 0.16085 7.9496E-05 494.2250970622661 52.984 0.22507 52.532 52.438 52.663 -0.45173 20 11 2 0 0 0 0.77907 1 28658 28658 10.183 0 1 2353400 42028 10993 27888 28598 49433 49433 -0.057897097363934336 NFIAPAPVTS 10 Unmodified _NFIAPAPVTS_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.276611328125 2 508.7742 1015.53385 0.73527 0.00037409 -1.0008 -0.00050917 -0.26551 -0.00013509 508.7740717989893 73.876 0.88739 67.701 67.326 68.213 -6.1757 160 44 5 0 0 0 0.52888 1 48617 48617 14.838 0.93222 1 121370000 + 42029 24211 27889 28599 49434 49434 0.02670054068948957 NFILYWKF 8 Unmodified _NFILYWKF_ 0 0 0 REV__ENSG00000186777|ENST00000419098|ZNF732 REV__ENSG00000186777|ENST00000419098|ZNF732 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8989868164062 3 377.539294 1129.59605 -0.05714 -2.1572E-05 1.1894 0.00044904 1.1323 0.00042747 377.53958967263384 32.945 0.36375 32.975 32.822 33.186 0.029743 26 15 2 0 0 0 8.7369 1 17393 17393 0.40072 0.1317 1 2633300 + 42030 23593 27890 28600 49435 49435 0.036438252079278755 NFKDSRLKRK 10 Unmodified _NFKDSRLKRK_ 0 0 0 ENST00000493917.5_1_9:33248401-33256801:-|nuORF;ENST00000379707.7_1_9:33255219-33262163:-|nuORF;nc|ENSG00000107262|Q99933-4|BAG1;nc|ENSG00000107262|Q99933-3|BAG1;ENSG00000107262|ENST00000634734|BAG1 ENST00000493917.5_1_9:33248401-33256801:-|nuORF ENST00000493917.5_1_9:33248401-33256801:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883056640625 3 431.257961 1290.75205 0.034766 1.4993E-05 -3.3471 -0.0014435 -3.3123 -0.0014285 431.2563080545889 53.389 0.24481 53.325 53.136 53.381 -0.063423 13 11 2 0 0 0 0.24008 1 28889 28889 0.62683 0.12087 1 2002700 42031 2484 27891 28601 49436 49436 0.11830663711248235 NFKEPHKERMV 11 Unmodified _NFKEPHKERMV_ 0 0 0 REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.8659057617188 2 707.866628 1413.7187 0.039105 2.7681E-05 1.7869 0.0012649 1.826 0.0012926 707.8678172274647 66.01 0.37067 66.01 65.824 66.195 0 46 18 3 0 0 0 0.6889 1 36754 36754 5.2969 2.3016 1 2543100 + 42032 17315 27892 28602 49437 49437 0.028392938770366527 NFKLLSHSL 9 Unmodified _NFKLLSHSL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8041381835938 2 529.803291 1057.59203 0.32795 0.00017375 1.6237 0.00086024 1.9516 0.001034 529.8039893638835 48.541 0.39056 48.497 48.218 48.609 -0.04369 38 19 3 0 0 0 0.0082353 1 26169 26169 96.111 50.09 1 3603100 + 42033 156 27893 28603 49438 49438 0.06553735714260256 NFKLLSHSL 9 Unmodified _NFKLLSHSL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5380859375 3 353.537953 1057.59203 0.2079 7.3499E-05 0.78318 0.00027688 0.99107 0.00035038 353.53809378129307 48.54 0.27151 48.497 48.359 48.631 -0.04369 34 13 3 0 0 0 0.087258 1 26190 26190 26.268 16.724 1 5077900 + 42034 156 27893 28603 49439 49439 0.06553735714260256 NFKLLSHSL 9 Unmodified _NFKLLSHSL_ 0 0 0 CON__P01966 CON__P01966 CON__P01966 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5387878417969 3 353.537953 1057.59203 1.5503 0.00054809 -0.24023 -8.4929E-05 1.3101 0.00046316 353.53776383827767 80.269 0.19231 74.093 73.96 74.152 -6.1757 15 11 2 0 0 0 0.095405 1 52641 52641 31.268 9.6782 1 11266000 + 42035 156 27893 28603 49440 49440 0.06553735714260256 NFKVEPPISMP 11 Unmodified _NFKVEPPISMP_ 0 0 0 REV__ENST00000489769.1_1_14:94844788-94846995:-|nuORF REV__ENST00000489769.1_1_14:94844788-94846995:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 629.7966918945312 2 629.828649 1257.64274 0.74424 0.00046874 2.0939 0.0013188 2.8382 0.0017876 629.8295548810511 52.674 0.25329 46.94 46.707 46.96 -5.7345 19 13 2 0 0 0 0.30049 1 33124 33124 6.2058 0.47393 1 22594000 + 42036 23910 27894 28604 49441 49441 0.024228969769183095 NFLDFAYHF 9 Unmodified _NFLDFAYHF_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2714233398438 2 587.271824 1172.5291 0.69286 0.0004069 0.050437 2.962E-05 0.7433 0.00043652 587.2718424322829 90.32 0.30946 90.362 90.215 90.524 0.042183 27 10 4 0 0 0 0.012158 1 50243 50243 74.396 45.315 1 13647000 42037 5874 27895 28605 49442 49442 -0.05026830073825295 NFLDFAYHF 9 Unmodified _NFLDFAYHF_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.272216796875 2 587.271824 1172.5291 0.96392 0.00056608 -0.84268 -0.00049488 0.12124 7.1203E-05 587.2715816822736 99.402 0.14823 93.226 93.128 93.276 -6.1757 14 9 2 0 0 0 0.012158 1 66189 66189 74.396 48.997 1 63470000 42038 5874 27895 28605 49443 49443 -0.05026830073825295 NFLEMKNKF 9 Unmodified _NFLEMKNKF_ 0 0 0 nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENST00000470531.5_3_17:7807732-7814900:+|nuORF nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5524291992188 3 390.870715 1169.59032 -0.26742 -0.00010452 -1.0405 -0.00040672 -1.308 -0.00051124 390.87070086083514 37.209 0.35054 37.23 37.07 37.42 0.021545 25 15 3 0 0 0 0.21767 1 19789 19789 2.9952 0.26005 1 2172300 42039 7938 27896 28606 49444 49444 0.012303586339612593 NFLESFYF 8 Unmodified _NFLESFYF_ 0 0 0 ENSG00000135750|ENST00000366621|KCNK1;ENST00000472190.5_1_1:233765551-233807273:+|nuORF ENSG00000135750|ENST00000366621|KCNK1 ENSG00000135750|ENST00000366621|KCNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2467651367188 2 533.74765 1065.48075 0.40986 0.00021876 -1.3344 -0.00071223 -0.92453 -0.00049347 533.747138773628 88.67 0.24986 88.166 88 88.25 -0.50423 18 10 2 0 0 0 0.80143 1 48469 48469 5.7604 0 1 428360 42040 4737 27897 28607 49445 49445 -0.049373237137160686 NFLETCRPWS 10 Unmodified _NFLETCRPWS_ 0 0 0 ENST00000433828.5_1_6:31619476-31619688:-|nuORF ENST00000433828.5_1_6:31619476-31619688:-|nuORF ENST00000433828.5_1_6:31619476-31619688:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.7940673828125 2 626.792598 1251.57064 NaN NaN NaN NaN NaN NaN NaN 69.324 1 69.354 68.854 69.854 0.030914 0 0 0 0.8671 1 38102 38102 9.3831 0 1 42041 13296 27898 28608 49446 49446 -0.0450801737679285 NFLKVVKRIIR 11 Unmodified _NFLKVVKRIIR_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.4589233398438 2 693.458813 1384.90307 1.0792 0.00074835 -2.3669 -0.0016413 -1.2877 -0.00089298 693.457192867291 104.25 0.10817 98.079 98.014 98.122 -6.1757 10 5 3 0 0 0 0.74203 1 69848 69848 0.30703 0.30703 1 9045100 + 42042 20059 27899 28609 49447 49447 0.2260185008992721 NFLKVVKRIIR 11 Unmodified _NFLKVVKRIIR_ 0 0 0 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 REV__nc|ENSG00000135372|Q9H0A0-2|NAT10 MSMS AL20221201_MKP_PDAC_01 4 462.641357421875 3 462.641634 1384.90307 NaN NaN NaN NaN NaN NaN NaN 105.02 1 98.845 98.345 99.345 -6.1757 0 0 0 0.94165 1 70318 70318 0.45452 0.31463 1 + 42043 20059 27899 28609 49448 49448 0.2260185008992721 NFLPPIIARF 10 Unmodified _NFLPPIIARF_ 0 0 0 nc|ENSG00000057019|Q96PD2-2|DCBLD2;ENSG00000057019|ENST00000326840|DCBLD2;ENST00000470393.1_1_3:98526911-98531458:-|nuORF nc|ENSG00000057019|Q96PD2-2|DCBLD2 nc|ENSG00000057019|Q96PD2-2|DCBLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3530883789062 2 594.350409 1186.68626 1.7638 0.0010483 1.9357 0.0011505 3.6995 0.0021988 594.3511035106719 93.858 0.24434 93.881 93.794 94.038 0.022987 23 9 3 0 0 0 0.0575 1 52194 52194 56.177 23.872 1 2383700 42044 789 27900 28610 49449 49449 0.10038874536348885 NFLSACCCYL 10 Unmodified _NFLSACCCYL_ 0 0 0 nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14;nc|ENSG00000104635|Q15043-3|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4904479980469 3 379.490629 1135.45006 0.27675 0.00010502 -0.024897 -9.4482E-06 0.25185 9.5575E-05 379.4906684589383 60.945 0.40363 60.945 60.767 61.171 0 41 16 4 0 0 0 0.69126 2 33956 33956;34067 3.8763 0.17963 1 4700900 42045 2219 27901 28611 49450;49451 49450 -0.1122488468629399 NFLSECGFTY 10 Unmodified _NFLSECGFTY_ 0 0 0 ENSG00000143107|ENST00000370017|FNDC7 ENSG00000143107|ENST00000370017|FNDC7 ENSG00000143107|ENST00000370017|FNDC7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7086181640625 2 590.752607 1179.49066 0.24118 0.00014248 -0.91337 -0.00053957 -0.67218 -0.00039709 590.7520491195772 58.134 0.18911 58.134 57.99 58.179 0 9 7 2 0 0 0 0.23693 1 32366 32366 6.2058 0.97511 1 547420 42046 5463 27902 28612 49452 49452 -0.09190503770651048 NFLSRSFYW 9 Unmodified _NFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.2988891601562 2 610.298373 1218.58219 0.31333 0.00019123 0.6281 0.00038333 0.94143 0.00057455 610.298529125555 76.829 0.35655 76.879 76.676 77.033 0.050102 43 14 5 0 0 0 0.0082995 2 42357 42357;42465 110.55 80.712 1 13327000 42047 2208 27903 28613 49453;49454 49453 -0.01835452291152251 NFLSRSFYW 9 Unmodified _NFLSRSFYW_ 0 0 0 ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 ENSG00000104442|ENST00000276569|ARMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3002319335938 2 610.298373 1218.58219 1.1175 0.00068204 -0.15953 -9.7362E-05 0.95802 0.00058468 610.2983576348471 97.073 0.32136 90.897 90.741 91.062 -6.1757 46 18 3 0 0 0 0.0071813 2 64275 64275;64395 133.05 101.78 1 70212000 42048 2208 27903 28613 49455;49456 49455 -0.01835452291152251 NFNEVLEEY 9 Unmodified _NFNEVLEEY_ 0 0 0 ENSG00000138622|ENST00000261917|HCN4;ENSG00000099822|ENST00000251287|HCN2;ENST00000568218.2_1_15:32605934-32606516:-|nuORF;ENST00000569415.1_1_15:30516861-30517158:+|nuORF;ENSG00000164588|ENST00000303230|HCN1 ENSG00000138622|ENST00000261917|HCN4;ENSG00000164588|ENST00000303230|HCN1 ENSG00000164588|ENST00000303230|HCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7581787109375 2 578.761486 1155.50842 -0.42916 -0.00024838 1.1146 0.0006451 0.68547 0.00039672 578.7615629549197 48.589 0.49812 48.589 48.33 48.828 0 79 23 5 0 0 0 0.23158 1 26605 26605 20.454 0 1 174850000 42049 5072;7209 27904 28614 49457 49457 -0.06311465244129977 NFPDDDDIDDY 11 Unmodified _NFPDDDDIDDY_ 0 0 0 REV__ENSG00000141540|ENST00000269346|TTYH2 REV__ENSG00000141540|ENST00000269346|TTYH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.2518920898438 2 672.249137 1342.48372 4.2768 0.002875 -1.8681 -0.0012558 2.4086 0.0016192 672.74909065867 99.308 0.17125 99.28 99.189 99.36 -0.028282 21 5 6 0 0 0 0.69316 1 55162 55162 4.897 1.3005 1 6996100 + 42050 20544 27905 28615 49458 49458 -0.17382189908198598 NFPDDDDIDDY 11 Unmodified _NFPDDDDIDDY_ 0 0 0 REV__ENSG00000141540|ENST00000269346|TTYH2 REV__ENSG00000141540|ENST00000269346|TTYH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 672.249137 1342.48372 4.2768 0.002875 -1.8681 -0.0012558 2.4086 0.0016192 672.74909065867 99.308 0.17125 99.28 99.189 99.36 -0.028282 0 0 NaN 4.897 21 5 6 NaN NaN NaN NaN 0 NaN NaN 0 6996100 + 42051 20544 27905 28615 -0.17382189908198598 NFPDQFSGHQF 11 Unmodified _NFPDQFSGHQF_ 0 0 0 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.863525390625 3 441.863276 1322.568 -0.32749 -0.00014471 -0.1601 -7.0744E-05 -0.4876 -0.00021545 441.86329508273604 17.899 0.11628 17.899 17.837 17.953 0 33 16 3 0 0 0 0.73115 1 8870 8870 0.45452 0 1 872660 42052 16526 27906 28616 49459 49459 -0.08038149510093717 NFPDQFSGHQF 11 Unmodified _NFPDQFSGHQF_ 0 0 0 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 nc|ENSG00000211731|A0A0A0MS05|TRBV5-7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 441.863276 1322.568 -0.59645 -0.00026355 -0.45828 -0.0002025 -1.0547 -0.00046605 441.8630935224235 17.884 0.064322 17.897 17.863 17.927 0.013866 -0.00057963 -0.00034539 NaN 0.45452 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 344520 42053 16526 27906 28616 -0.08038149510093717 NFPKGMLLRF 10 Unmodified _NFPKGMLLRF_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2301940917969 3 408.230355 1221.66923 0.58172 0.00023748 0.32508 0.00013271 0.9068 0.00037019 408.23051012092475 93.526 0.64333 87.35 87.04 87.684 -6.1757 89 43 3 0 0 0 0.016642 2 61775 61775;61908 59.052 43.804 1 29726000 42054 2711 27907 28617 49460;49461 49460 0.06726630658909016 NFPKGMLLRF 10 Unmodified _NFPKGMLLRF_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8416137695312 2 611.841894 1221.66923 0.37493 0.0002294 1.0025 0.00061335 1.3774 0.00084275 611.8429512965811 93.507 0.41676 87.332 87.139 87.555 -6.1757 45 26 2 0 0 0 0.23548 1 61885 61885 31.268 15.421 1 12341000 42055 2711 27907 28617 49462 49462 0.06726630658909016 NFPKGMLLRF 10 Unmodified _NFPKGMLLRF_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MSMS AL20221201_MKP_PDAC_01 4 408.2316589355469 3 408.230355 1221.66923 NaN NaN NaN NaN NaN NaN NaN 93.161 1 86.985 86.485 87.485 -6.1757 0 0 0 0.044772 1 61647 61647 49.527 40.551 1 42056 2711 27907 28617 49463 49463 0.06726630658909016 NFPKGMLLRF 10 Unmodified _NFPKGMLLRF_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MSMS AL20221201_MKP_PDAC_01 4 611.8426513671875 2 611.841894 1221.66923 NaN NaN NaN NaN NaN NaN NaN 93.31 1 87.134 86.634 87.634 -6.1757 0 0 0 0.039331 1 61753 61753 60.074 32.445 1 42057 2711 27907 28617 49464 49464 0.06726630658909016 NFQEQLFEL 9 Unmodified _NFQEQLFEL_ 0 0 0 REV__nc|ENSG00000204463|P46379-4|BAG6 REV__nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2863159179688 2 584.287671 1166.56079 0.35839 0.0002094 -0.084911 -4.9612E-05 0.27348 0.00015979 584.2868515254177 65.668 0.95482 59.492 59.162 60.117 -6.1757 145 55 3 0 0 0 0.21643 1 42999 42999 21.537 0 1 117840000 + 42058 24172 27908 28618 49465 49465 -0.015828821105060342 NFQEQLFEL 9 Unmodified _NFQEQLFEL_ 0 0 0 REV__nc|ENSG00000204463|P46379-4|BAG6 REV__nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.287109375 2 584.287671 1166.56079 0.61986 0.00036218 -0.70769 -0.0004135 -0.087834 -5.132E-05 584.2871436824404 67.07 1.8442 60.894 60.096 61.94 -6.1757 394 104 5 0 0 0 0.28023 1 44099 44099 18.146 1.9972 1 557220000 + 42059 24172 27908 28618 49466 49466 -0.015828821105060342 NFRKWIFY 8 Unmodified _NFRKWIFY_ 0 0 0 ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5452270507812 3 391.87831 1172.6131 -0.53409 -0.0002093 2.2147 0.00086789 1.6806 0.00065859 391.8798524249983 18.996 0.081099 18.996 18.951 19.032 0 9 5 2 0 0 0 8.7369 1 9481 9481 1.8442 0 1 730970 42060 9625 27909 28619 49467 49467 0.03369745813733971 NFRTSGKL 8 Unmodified _NFRTSGKL_ 0 0 0 REV__nc|ENSG00000053747|Q16787-3|LAMA3 REV__nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2153015136719 2 461.758884 921.503215 -0.21376 -9.8707E-05 -0.39607 -0.00018289 -0.60983 -0.0002816 461.75875673119873 27.964 0.22996 27.964 27.804 28.034 0 23 12 3 0 0 0 8.7369 1 14348 14348 8.5933 2.8329 1 5012400 + 42061 17278 27910 28620 49468 49468 0.0393232047457559 NFSHLEWMY 9 Unmodified _NFSHLEWMY_ 0 0 0 THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|30|2|sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|30|2|sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|30|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5143127441406 3 409.51482 1225.52263 -1.0264 -0.00042031 -0.58522 -0.00023966 -1.6116 -0.00065997 409.51464197177995 32.802 0.25026 32.802 32.677 32.927 0 27 12 3 0 0 0 0.48152 1 17155 17155 5.2969 0.39987 1 5211500 42062 30186 27911 28621 49469 49469 -0.08111091296837003 NFSLVPLQV 9 Unmodified _NFSLVPLQV_ 0 0 0 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7921447753906 2 508.792392 1015.57023 0.42736 0.00021744 0.10781 5.4854E-05 0.53517 0.00027229 508.7923792162318 81.789 0.33189 81.294 81.139 81.471 -0.4952 31 12 4 0 0 0 0.14602 1 44781 44781 28.487 10.352 1 1153200 42063 10290 27912 28622 49470 49470 0.06306930965649826 NFSSSNFAKQM 11 Unmodified _NFSSSNFAKQM_ 0 0 0 REV__ENSG00000100401|ENST00000356244|RANGAP1 REV__ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.7877807617188 2 630.787512 1259.56047 0.93766 0.00059146 0.27363 0.0001726 1.2113 0.00076407 630.7875671161188 71.702 1.1921 65.526 65.066 66.259 -6.1757 142 62 3 0 0 0 0.16515 2 47220 46755;47220 34.932 5.8505 1 78988000 + 42064 18062 27913 28623 49471;49472 49472 -0.058926251020466225 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7424011230469 2 492.742899 983.471246 0.090942 4.4811E-05 -1.4844 -0.0007314 -1.3934 -0.00068659 492.7420144003527 62.318 0.18969 62.318 62.189 62.378 0 19 11 2 0 0 0 0.32871 1 34708 34708 15.847 6.4997 1 3396400 42065 4331 27914 28624 49473 49473 -0.02115091999246488 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 984.4780883789062 1 984.478522 983.471246 0.41026 0.00040389 -0.93817 -0.0009236 -0.52791 -0.00051971 984.4769341726312 62.862 0.2952 62.375 62.227 62.522 -0.48617 24 14 2 0 0 0 0.0030184 2 34238 34238;34340 126.57 71.792 1 12917000 42066 4331 27914 28624 49474;49475 49474 -0.02115091999246488 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7422790527344 2 492.742899 983.471246 0.69157 0.00034077 -1.2473 -0.00061458 -0.55569 -0.00027381 492.7423627887788 62.861 0.37705 62.375 62.185 62.562 -0.48617 46 18 3 0 0 0 0.014417 2 34241 34241;34354 69.105 27.01 1 33971000 42067 4331 27914 28624 49476;49477 49476 -0.02115091999246488 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7443542480469 2 492.742899 983.471246 0.70835 0.00034903 0.20472 0.00010087 0.91306 0.00044991 492.7430235203032 69.784 0.48447 63.608 63.377 63.862 -6.1757 63 26 3 0 0 0 0.0086722 3 45484 45484;45604;45730 88.954 54.851 1 100280000 42068 4331 27914 28624 49478;49479;49480 49478 -0.02115091999246488 NFTNVAATF 9 Unmodified _NFTNVAATF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.4822998046875 1 984.478522 983.471246 0.73087 0.00071952 -0.52468 -0.00051654 0.20619 0.00020299 984.478708324139 69.807 0.36967 63.631 63.41 63.78 -6.1757 33 19 2 0 0 0 0.00012323 2 45507 45507;45625 152.41 77.989 1 33790000 42069 4331 27914 28624 49481;49482 49481 -0.02115091999246488 NFTTIQRKY 9 Unmodified _NFTTIQRKY_ 0 0 0 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 ENSG00000057468|ENST00000263187|MSH4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8819580078125 3 390.880379 1169.61931 NaN NaN NaN NaN NaN NaN NaN 23.495 1 23.507 23.007 24.007 0.012396 0 0 0 0.76439 1 11984 11984 4.5289 0 1 42070 792 27915 28625 49483 49483 0.04128219254630494 NFVEKSLETI 10 Unmodified _NFVEKSLETI_ 0 0 0 REV__ENSG00000089847|ENST00000318934|ANKRD24 REV__ENSG00000089847|ENST00000318934|ANKRD24 MSMS AL20221201_MKP_PDAC_01 4 393.8804321289062 3 393.880044 1178.6183 NaN NaN NaN NaN NaN NaN NaN 46.202 1 41.247 40.747 41.747 -4.9549 0 0 0 0.71157 1 28493 28493 10.315 1.8709 1 + 42071 17847 27916 28626 49484 49484 0.036139600950718886 NFVKYIDKL 9 Unmodified _NFVKYIDKL_ 0 0 0 REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF REV__ENST00000412444.5_1_2:213872086-213945912:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2914428710938 2 570.326599 1138.63865 0.34339 0.00019585 -1.0545 -0.00060142 -0.71112 -0.00040557 570.3261834153446 61.02 0.17854 60.977 60.866 61.044 -0.04351 13 8 2 0 0 0 0.11314 1 33311 33311 38.176 14.386 1 2484900 + 42072 17144 27917 28627 49485 49485 0.07487175545520586 NFVLAKSP 8 Unmodified _NFVLAKSP_ 0 0 0 REV__ENST00000379565.7_1_X:20168583-20168808:-|nuORF REV__ENST00000379565.7_1_X:20168583-20168808:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.1441040039062 2 438.252903 874.491253 NaN NaN NaN NaN NaN NaN NaN 103.12 1 96.946 96.446 97.446 -6.1757 0 0 0 0.97444 1 69162 69162 5.2307 0 1 + 42073 26290 27918 28628 49486 49486 0.048987037313850124 NFYARRSIL 9 Unmodified _NFYARRSIL_ 0 0 0 REV__nc|ENSG00000112769|Q16363-2|LAMA4 REV__nc|ENSG00000112769|Q16363-2|LAMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3220825195312 2 570.31964 1138.62473 2.327 0.0013271 0.79021 0.00045067 3.1172 0.0017778 570.3202051500003 96.318 0.25295 96.311 96.163 96.416 -0.007019 14 8 2 0 0 0 0.39863 1 53527 53527 12.532 0 1 1496200 + 42074 18836 27919 28629 49487 49487 0.06095942837077928 NFYFLIIF 8 Unmodified _NFYFLIIF_ 0 0 0 ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B;ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ENSG00000068650|ENST00000375645|ATP11A;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.792724609375 2 538.794404 1075.57425 0.24973 0.00013455 -2.0158 -0.0010861 -1.7661 -0.00095156 538.7929332980398 78.886 0.45903 78.886 78.64 79.099 0 51 21 3 0 0 0 0.6895 1 43758 43758 18.135 4.6271 1 1071800 42075 2003;39 27920 28630 49488 49488 0.039490204593676026 NFYFLIIF 8 Unmodified _NFYFLIIF_ 0 0 0 ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B;ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ENSG00000068650|ENST00000375645|ATP11A;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7921752929688 2 538.794404 1075.57425 NaN NaN NaN NaN NaN NaN NaN 79.267 1 78.781 78.281 79.281 -0.48596 0 0 0 0.94061 1 43418 43418 12.532 3.9383 1 42076 2003;39 27920 28630 49489 49489 0.039490204593676026 NGAAVAKA 8 Unmodified _NGAAVAKA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1;REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2005004882812 2 351.20067 700.386788 0.12247 4.3012E-05 -0.87255 -0.00030644 -0.75008 -0.00026343 351.20029455004203 66.439 0.31611 65.956 65.774 66.09 -0.48323 23 15 2 0 0 0 0.80975 1 36250 36250 0.79363 0 1 2751800 + 42077 20210;22610 27921 28631 49490 49490 0.02461001974654664 NGAAVAKA 8 Unmodified _NGAAVAKA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1;REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2002563476562 2 351.20067 700.386788 0.80568 0.00028296 -0.80905 -0.00028414 -0.0033646 -1.1817E-06 351.2002737313353 66.044 0.43114 66.054 65.791 66.222 0.0095596 45 21 3 0 0 0 0.80975 2 36122 36122;36225 0.79363 0 1 22673000 + 42078 20210;22610 27921 28631 49491;49492 49491 0.02461001974654664 NGAAVAKA 8 Unmodified _NGAAVAKA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1;REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2003784179688 2 351.20067 700.386788 1.4844 0.00052131 -1.6261 -0.00057108 -0.14173 -4.9775E-05 351.20014310737565 77.651 0.43018 71.476 71.254 71.684 -6.1757 40 24 2 0 0 0 0.80975 1 50743 50743 0.79363 0 1 10862000 + 42079 20210;22610 27921 28631 49493 49493 0.02461001974654664 NGAAVAKA 8 Unmodified _NGAAVAKA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1;REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 351.20067 700.386788 0.12247 4.3012E-05 -0.87255 -0.00030644 -0.75008 -0.00026343 351.20029455004203 66.439 0.31611 65.956 65.774 66.09 -0.48323 -0.048675 -2.3506E-05 NaN 0.79363 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2751800 + 42080 20210;22610 27921 28631 0.02461001974654664 NGAAVAKA 8 Unmodified _NGAAVAKA_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1;REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 351.20067 700.386788 0.80568 0.00028296 -0.80905 -0.00028414 -0.0033646 -1.1817E-06 351.2002737313353 66.044 0.43114 66.054 65.791 66.222 0.0095596 0.048675 2.11E-05 NaN 0.79363 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 22673000 + 42081 20210;22610 27921 28631 0.02461001974654664 NGANPHCF 8 Unmodified _NGANPHCF_ 0 0 0 PRKD1|p.I816Sfs*7|1|0.21|ENSG00000184304|chr14:29578353-29578353|A/-|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1 PRKD1|p.I816Sfs*7|1|0.21|ENSG00000184304|chr14:29578353-29578353|A/-|frameshift_variant PRKD1|p.I816Sfs*7|1|0.21|ENSG00000184304|chr14:29578353-29578353|A/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 430.1802062988281 2 430.179412 858.344271 NaN NaN NaN NaN NaN NaN NaN 62.144 1 55.969 55.469 56.469 -6.1757 0 0 0 0.95973 1 40077 40077 8.5933 0.68312 1 42082 9242 27922 28632 49494 49494 -0.09056716425220657 NGATGIVQ 8 Unmodified _NGATGIVQ_ 0 0 0 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 REV__nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.202880859375 2 380.20341 758.392267 0.45943 0.00017468 -0.72701 -0.00027641 -0.26758 -0.00010173 380.2030348985476 71.035 0.33707 70.557 70.389 70.726 -0.47735 25 14 2 0 0 0 0.80722 1 38847 38847 2.3027 0 1 2026900 + 42083 23219 27923 28633 49495 49495 0.003406807664759981 NGAYNQDY 8 Unmodified _NGAYNQDY_ 0 0 0 REV__ENSG00000196417|ENST00000396408|ZNF765 REV__ENSG00000196417|ENST00000396408|ZNF765 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.6894836425781 2 472.690864 943.367175 NaN NaN NaN NaN NaN NaN NaN 44.855 1 44.855 44.355 45.355 0 0 0 0 0.93587 1 24423 24423 13.508 0 1 + 42084 23826 27924 28634 49496 49496 -0.10677418826765006 NGCADFFIRGE 11 Unmodified _NGCADFFIRGE_ 0 0 0 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5197143554688 3 410.185362 1227.53426 0.35021 0.00014365 -1.65 -0.00067679 -1.2998 -0.00053314 410.1846852886992 22.922 0.37169 20.144 19.933 20.305 -2.7784 41 25 2 0 0 0 0.59689 1 12368 12368 6.2344 0.83165 1 9107900 42085 7429 27925 28635 49497 49497 -0.07040894273541198 NGCDVNIEY 9 Carbamidomethyl (C) _NGC(Carbamidomethyl (C))DVNIEY_ NGC(1)DVNIEY NGC(82)DVNIEY 0 1 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.22412109375 2 542.224214 1082.43387 0.75296 0.00040827 -0.12984 -7.0403E-05 0.62312 0.00033787 542.2240653644817 49.317 0.38346 43.921 43.745 44.128 -5.3961 38 24 2 0 0 0 0.009483 1 30803 30803 81.89 6.1294 1 74529000 42086 1645 27926 28636 49498 49498 158 -0.10404551327178524 NGCHWGTM 8 Unmodified _NGCHWGTM_ 0 0 0 ENST00000522519.5_1_8:72755563-72755689:+|nuORF ENST00000522519.5_1_8:72755563-72755689:+|nuORF ENST00000522519.5_1_8:72755563-72755689:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.5199890136719 2 453.173272 904.331992 NaN NaN NaN NaN NaN NaN NaN 87.079 1 87.079 86.579 87.579 0 0 0 0 0.97444 1 48224 48224 0.79363 0 1 42087 14755 27927 28637 49499 49499 -0.12400076159906348 NGDAIVYVL 9 Unmodified _NGDAIVYVL_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5155029296875 1 963.514573 962.507297 0.39116 0.00037689 0.14579 0.00014047 0.53695 0.00051736 963.5139755681276 86.429 0.23341 85.926 85.811 86.044 -0.50318 16 9 2 0 0 0 0.38785 1 47262 47262 13.042 3.6593 1 394090 + 42088 17769 27928 28638 49500 49500 0.02454365177618456 NGDRYERCLY 10 Unmodified _NGDRYERCLY_ 0 0 0 REV__nc|ENSG00000106624|Q8IUX7-2|AEBP1 REV__nc|ENSG00000106624|Q8IUX7-2|AEBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.7923583984375 2 644.790586 1287.56662 0.17741 0.00011439 -0.26551 -0.0001712 -0.0881 -5.6806E-05 644.7904896651205 66.742 0.34856 66.742 66.512 66.86 0 36 15 3 0 0 0 0.54684 1 37165 37165 13.906 0 1 3451500 + 42089 18521 27929 28639 49501 49501 -0.0656610687049124 NGEDRQDSRR 10 Unmodified _NGEDRQDSRR_ 0 0 0 ENST00000487698.5_2_2:198288691-198299763:-|nuORF ENST00000487698.5_2_2:198288691-198299763:-|nuORF ENST00000487698.5_2_2:198288691-198299763:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.5287170410156 3 411.529068 1231.56537 0.6693 0.00027543 -0.82547 -0.0003397 -0.15617 -6.427E-05 411.5287495125849 17.665 0.95798 15.079 14.913 15.871 -2.5866 376 102 6 0 0 0 0.63399 4 9174 9174;9279;9381;9653 5.4027 5.4027 1 653220000 42090 14209 27930 28640 49502;49503;49504;49505 49502 -0.04114604915048403 NGFHGLVAY 9 Unmodified _NGFHGLVAY_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A;FAM120A|p.R175K|1|0.19|ENSG00000048828|chr9:93471190-93471190|G/A|missense_variant nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2459106445312 2 489.245609 976.476666 0.79417 0.00038854 0.11685 5.7169E-05 0.91102 0.00044571 489.2455425117854 50.783 0.3036 50.369 50.214 50.518 -0.41351 38 14 3 0 0 0 0.038285 1 27366 27366 50.855 33.913 1 6605100 42091 703 27931 28641 49506 49506 -0.012513684167743122 NGFKAFNAL 9 Unmodified _NGFKAFNAL_ 0 0 0 REV__nc|ENSG00000075391|Q9UJF2|RASAL2 REV__nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2626342773438 2 491.261259 980.507966 0.1109 5.4479E-05 0.53908 0.00026483 0.64997 0.00031931 491.2614114185247 84.906 0.3492 84.969 84.814 85.164 0.063179 17 14 2 0 0 0 0.5029 1 46989 46989 7.2892 0.56607 1 16548000 + 42092 17569 27932 28642 49507 49507 0.01693204617322408 NGGDARSQA 9 Unmodified _NGGDARSQA_ 0 0 0 REV__ENST00000548981.5_1_12:51470412-51477302:-|nuORF REV__ENST00000548981.5_1_12:51470412-51477302:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.2010498046875 2 438.20193 874.389307 NaN NaN NaN NaN NaN NaN NaN 105.11 1 98.933 98.433 99.433 -6.1757 0 0 0 0.79771 1 70396 70396 6.2058 0.97511 1 + 42093 28692 27933 28643 49508 49508 -0.05291194358323992 NGHIGMLSPQ 10 Unmodified _NGHIGMLSPQ_ 0 0 0 REV__ENSG00000198646|ENST00000359003|NCOA6 REV__ENSG00000198646|ENST00000359003|NCOA6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.7398681640625 2 527.260933 1052.50731 1.4039 0.00074022 2.4346 0.0012836 3.8385 0.0020239 527.2624846014352 34.015 0.25839 30.029 29.875 30.133 -3.9853 20 13 2 0 0 0 0.22489 1 19531 19531 13.042 1.4022 1 4111400 + 42094 24034 27934 28644 49509 49509 -0.016839580940086307 NGHYISLVF 9 Unmodified _NGHYISLVF_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2762451171875 2 525.274367 1048.53418 0.56074 0.00029454 1.8048 0.00094803 2.3656 0.0012426 525.2752544271757 72.89 0.50395 72.414 72.102 72.606 -0.47588 53 22 4 0 0 0 0.19127 2 39857 39857;39955 24.021 4.7636 1 3617500 + 42095 18295 27935 28645 49510;49511 49510 0.011854737888143063 NGHYISLVF 9 Unmodified _NGHYISLVF_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2747192382812 2 525.274367 1048.53418 1.2022 0.00063148 0.44574 0.00023414 1.6479 0.00086562 525.2748458937647 79.874 0.58819 73.698 73.387 73.975 -6.1757 55 35 2 0 0 0 0.28023 2 52220 52220;52357 18.146 4.2403 1 20245000 + 42096 18295 27935 28645 49512;49513 49512 0.011854737888143063 NGHYKQEWQTT 11 Unmodified _NGHYKQEWQTT_ 0 0 0 REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.5487976074219 3 464.549469 1390.62658 -0.01877 -8.7196E-06 0.13163 6.1149E-05 0.11286 5.243E-05 464.5494820608173 18.068 0.090946 18.068 18.022 18.113 0 13 8 2 0 0 0 0.74203 1 8938 8938 0.08335 0 1 657000 + 42097 20109 27936 28646 49514 49514 -0.05311092935630768 NGIGHSKHHK 10 Unmodified _NGIGHSKHHK_ 0 0 0 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;ENST00000537318.5_1_11:61546644-61549415:+|nuORF MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2017822265625 3 372.200334 1113.57917 1.1674 0.00043451 1.1224 0.00041776 2.2898 0.00085228 372.2007641025571 40.423 1.3385 35.893 35.512 36.851 -4.5294 175 91 2 0 0 0 0.67459 1 24717 24717 3.0723 3.0723 1 127400000 42098 3825 27937 28647 49515 49515 0.026927173747026245 NGIITSAQ 8 Unmodified _NGIITSAQ_ 0 0 0 REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF REV__ENST00000509475.5_1_4:40892379-41016395:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2160339355469 2 402.216517 802.418482 0.73999 0.00029763 -1.3652 -0.00054909 -0.62516 -0.00025145 402.21582254144727 74.44 0.41414 73.964 73.741 74.155 -0.47588 31 17 2 0 0 0 0.80722 1 40699 40699 2.3027 0 1 1883800 + 42099 21803 27938 28648 49516 49516 0.009369499379431545 NGIQGVAG 8 Unmodified _NGIQGVAG_ 0 0 0 REV__ENST00000482722.5_1_1:40766856-40777859:-|nuORF REV__ENST00000482722.5_1_1:40766856-40777859:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.189697265625 2 358.190303 714.366053 0.46795 0.00016762 -1.2137 -0.00043473 -0.74574 -0.00026712 358.1897936399521 67.463 0.29686 66.981 66.822 67.119 -0.48218 24 12 2 0 0 0 0.80676 1 36846 36846 2.5775 0 1 1584500 + 42100 17245 27939 28649 49517 49517 -0.00255588405002527 NGISSKSSII 10 Unmodified _NGISSKSSII_ 0 0 0 REV__ENST00000265990.10_1_10:93726429-93740242:+|nuORF REV__ENST00000265990.10_1_10:93726429-93740242:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.28271484375 2 503.282389 1004.55022 NaN NaN NaN NaN NaN NaN NaN 70.129 1 70.129 69.629 70.629 0 0 0 0 0.7417 1 39077 39077 14.838 3.198 1 + 42101 25099 27940 28650 49518 49518 0.04813135235053778 NGKKIQAH 8 Unmodified _NGKKIQAH_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2589416503906 2 448.259051 894.503549 0.5659 0.00025367 -0.59029 -0.0002646 -0.024396 -1.0936E-05 448.2587147002542 77.712 0.35448 77.765 77.465 77.819 0.052452 26 14 2 0 0 0 0.80975 1 42822 42822 0.79363 0 1 5995100 + 42102 20468 27941 28651 49519 49519 0.05207740194418875 NGKRIGSDF 9 Unmodified _NGKRIGSDF_ 0 0 0 nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;ENSG00000164796|ENST00000297405|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 nc|ENSG00000164796|Q7Z407-5|CSMD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7567443847656 2 497.259248 992.503943 1.3667 0.00067958 1.5023 0.00074704 2.869 0.0014266 497.25998971697885 79.635 0.22141 73.459 73.404 73.626 -6.1757 22 13 2 0 0 0 0.18882 1 52264 52264 15.847 1.9411 1 25976000 42103 7246 27942 28652 49520 49520 0.007391151236220139 NGLKSLSA 8 Unmodified _NGLKSLSA_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2262268066406 2 395.226885 788.439217 0.70882 0.00028015 -1.4566 -0.0005757 -0.7478 -0.00029555 395.22625335480666 73.367 0.3469 72.891 72.695 73.042 -0.47588 23 15 2 0 0 0 0.80975 1 40124 40124 0.79363 0 1 763510 42104 10272 27943 28653 49521 49521 0.03653540317611714 NGLKSLSA 8 Unmodified _NGLKSLSA_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 395.226885 788.439217 -0.013693 -5.4118E-06 -1.4894 -0.00058864 -1.5031 -0.00059406 395.22619132149117 72.912 0.46625 72.954 72.7 73.166 0.041725 0.031426 -9.7348E-06 NaN 0.79363 51 22 3 NaN NaN NaN NaN 0 NaN NaN 0 22596000 42105 10272 27943 28653 0.03653540317611714 NGLLLIVVG 9 Unmodified _NGLLLIVVG_ 0 0 0 REV__ENSG00000255587|ENST00000612677|RAB44 REV__ENSG00000255587|ENST00000612677|RAB44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2926940917969 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.61381 1 72460 72460 0.52476 0 1 16154000 + 42106 24541 27944 28654 49522 49522 0.117081363166335 NGMDDSPEPA 10 Unmodified _NGMDDSPEPA_ 0 0 0 nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENSG00000241839|ENST00000323544|PLEKHO2 nc|ENSG00000241839|Q8TD55-2|PLEKHO2 nc|ENSG00000241839|Q8TD55-2|PLEKHO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1032.391845703125 1 1032.39387 1031.38659 -0.85686 -0.00088462 -0.88094 -0.00090948 -1.7378 -0.0017941 1032.392792910416 77.588 0.19538 77.106 77.049 77.244 -0.4826 11 8 2 0 0 0 0.69064 1 42473 42473 3.9444 0.66309 1 686210 42107 10687 27945 28655 49523 49523 -0.12784830598161534 NGMRLCADCKF 11 Unmodified _NGMRLCADCKF_ 0 0 0 REV__ENSG00000183454|ENST00000330684|GRIN2A REV__ENSG00000183454|ENST00000330684|GRIN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.8558654785156 3 419.856083 1256.54642 0.66004 0.00027712 -1.1548 -0.00048485 -0.49475 -0.00020773 419.8555069798232 42.867 0.11086 42.867 42.798 42.909 0 6 5 2 0 0 0 0.71503 1 23259 23259 2.8433 0.10809 1 2501500 + 42108 23348 27946 28656 49524 49524 -0.07159317126343012 NGNLTRSKDA 10 Unmodified _NGNLTRSKDA_ 0 0 0 REV__ENST00000554059.1_1_14:69866086-69895394:+|nuORF REV__ENST00000554059.1_1_14:69866086-69895394:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.190673828125 3 359.187871 1074.54179 1.6362 0.00058771 2.7261 0.0009792 4.3624 0.0015669 359.5228305144247 19.341 0.14297 16.684 16.546 16.689 -2.6564 10 9 2 0 0 0 0.68209 1 10205 10205 2.6312 0 1 4507700 + 42109 28746 27947 28657 49525 49525 0.007495813184277722 NGNQFKLI 8 Unmodified _NGNQFKLI_ 0 0 0 REV__ENST00000467790.5_1_1:79116118-79116157:+|nuORF REV__ENST00000467790.5_1_1:79116118-79116157:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2409973144531 2 467.261259 932.507966 NaN NaN NaN NaN NaN NaN NaN 103.31 1 103.26 102.76 103.76 -0.047928 0 0 0 0.97444 1 57369 57369 0.69038 0 1 + 42110 27439 27948 28658 49526 49526 0.03901204617341136 NGPHLDTHVF 10 Unmodified _NGPHLDTHVF_ 0 0 0 REV__ADCK2|p.A444T|1|0.18|ENSG00000133597|chr7:140687014-140687014|G/A|missense_variant REV__ADCK2|p.A444T|1|0.18|ENSG00000133597|chr7:140687014-140687014|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5208435058594 3 379.520962 1135.54106 -0.1783 -6.7669E-05 0.83337 0.00031628 0.65507 0.00024861 379.5212252793217 32.513 0.21502 32.384 32.266 32.481 -0.12915 19 9 3 0 0 0 0.67459 1 16936 16936 3.0723 0 1 4121800 + 42111 16700 27949 28659 49527 49527 -0.021292133306360483 NGPKRLARL 9 Unmodified _NGPKRLARL_ 0 0 0 REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF REV__ENST00000371241.5_1_10:97170518-97192246:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.8229370117188 2 512.82235 1023.63015 NaN NaN NaN NaN NaN NaN NaN 106.12 1 99.941 99.441 100.44 -6.1757 0 0 0 0.84564 1 71051 71051 2.0598 0.57785 1 + 42112 25379 27950 28660 49528 49528 0.11927666419558136 NGQGARFK 8 Unmodified _NGQGARFK_ 0 0 0 REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF REV__ENST00000546123.2_1_1:228362303-228363211:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 439.2382507324219 2 439.235576 876.456599 NaN NaN NaN NaN NaN NaN NaN 20.958 1 18.265 17.765 18.765 -2.693 0 0 0 0.90769 1 11188 11188 18.135 8.7875 1 + 42113 23227 27951 28661 49529 49529 0.013428806432898455 NGQGFALVY 9 Unmodified _NGQGFALVY_ 0 0 0 nc|ENSG00000127314|P61224-4|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;nc|ENSG00000127314|P61224-3|RAP1B;nc|ENSG00000254893|A6NIZ1|RAP1BL;ENSG00000127314|ENST00000250559|RAP1B;ENSG00000116473|ENST00000369709|RAP1A;ENST00000412709.3_1_9:18718223-18718373:-|nuORF nc|ENSG00000127314|P61224-4|RAP1B nc|ENSG00000127314|P61224-4|RAP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4842529296875 1 968.483608 967.476331 0.15826 0.00015328 -0.40691 -0.00039409 -0.24865 -0.00024081 968.4832320137084 66.782 0.24667 66.299 66.171 66.418 -0.48323 15 11 2 0 0 0 0.2143 1 36480 36480 21.747 7.165 1 1067000 42114 3220 27952 28662 49530 49530 -0.008707881366376569 NGRKKHIK 8 Unmodified _NGRKKHIK_ 0 0 0 REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.8112182617188 2 490.809242 979.603932 1.5299 0.0007509 1.471 0.00072196 3.0009 0.0014729 490.8097637818621 106.58 0.21981 100.41 100.29 100.51 -6.1757 68 44 2 0 0 0 0.80975 1 71316 71316 0.79363 0.10326 1 2138800 + 42115 29070 27953 28663 49531 49531 0.1133139724809098 NGRKKHIK 8 Unmodified _NGRKKHIK_ 0 0 0 REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF REV__ENST00000581862.5_1_18:70829151-70867947:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.8106079101562 2 490.809242 979.603932 NaN NaN NaN NaN NaN NaN NaN 106.76 1 100.59 100.09 101.09 -6.1757 0 0 0 0.97444 1 71447 71447 0.79363 0.10326 1 + 42116 29070 27953 28663 49532 49532 0.1133139724809098 NGTVAGFELLL 11 Unmodified _NGTVAGFELLL_ 0 0 0 nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7 nc|ENSG00000007237|O60861-2|GAS7 nc|ENSG00000007237|O60861-2|GAS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3135375976562 2 567.313689 1132.61282 -0.76941 -0.0004365 0.73263 0.00041563 -0.036777 -2.0864E-05 567.3143028768862 56.4 0.17361 55.915 55.767 55.941 -0.48554 14 8 2 0 0 0 0.017923 1 30597 30597 59.368 0 1 3402300 42117 361 27954 28664 49533 49533 0.051822813032458726 NGTVRYTTFE 10 Unmodified _NGTVRYTTFE_ 0 0 0 CON__P17690 CON__P17690 CON__P17690 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5258178710938 3 396.527894 1186.56185 NaN NaN NaN NaN NaN NaN NaN 19.396 1 19.396 18.896 19.896 0 0 0 0 0.99248 1 9696 9696 0.62683 0 1 + 42118 171 27955 28665 49534 49534 -0.02396667741663805 NGVCRAGF 8 Unmodified _NGVCRAGF_ 0 0 0 nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD MSMS AL20221201_MKP_PDAC_01 4 411.863525390625 2 412.197605 822.380657 NaN NaN NaN NaN NaN NaN NaN 23.796 1 20.969 20.469 21.469 -2.8273 0 0 0 0.95201 1 12903 12903 10.183 3.8293 1 42119 10451 27956 28666 49535 49535 -0.03763839528505741 NGVYHQAL 8 Unmodified _NGVYHQAL_ 0 0 0 REV__nc|ENSG00000258597|P20848|SERPINA2 REV__nc|ENSG00000258597|P20848|SERPINA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2313537597656 2 451.229959 900.445365 0.82298 0.00037135 1.1741 0.0005298 1.9971 0.00090116 451.23101760996775 60.274 0.25157 60.274 60.116 60.368 0 24 10 3 0 0 0 0.72953 1 33614 33614 14.582 5.9884 1 1678900 + 42120 29987 27957 28667 49536 49536 -0.008839414508543086 NGWRIPFN 8 Unmodified _NGWRIPFN_ 0 0 0 ENST00000471850.1_1_3:119298364-119306722:+|nuORF;ENSG00000144843|ENST00000357003|ADPRH ENST00000471850.1_1_3:119298364-119306722:+|nuORF ENST00000471850.1_1_3:119298364-119306722:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1004.88037109375 1 1003.51083 1002.50355 -0.10956 -0.00010994 0.66854 0.00067089 0.55899 0.00056095 1003.5098039112149 81.721 0.48764 81.721 81.37 81.857 0 47 24 3 0 0 0 0.80311 1 45176 45176 4.756 1.8668 1 1578700 42121 13888 27958 28668 49537 49537 0.0023974019442221106 NGYDDMEHL 9 Unmodified _NGYDDMEHL_ 0 0 0 REV__ENSG00000104321|ENST00000262209|TRPA1 REV__ENSG00000104321|ENST00000262209|TRPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2164916992188 2 547.216388 1092.41822 NaN NaN NaN NaN NaN NaN NaN 73.429 1 73.429 72.929 73.929 0 0 0 0 0.84564 1 40880 40880 2.0598 0 1 + 42122 18349 27959 28669 49538 49538 -0.12428837844208829 NHAGGNSR 8 Unmodified _NHAGGNSR_ 0 0 0 REV__ENST00000299626.9_1_11:77838464-77850674:-|nuORF REV__ENST00000299626.9_1_11:77838464-77850674:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.69189453125 2 406.691533 811.368512 NaN NaN NaN NaN NaN NaN NaN 21.382 1 21.41 20.91 21.91 0.028357 0 0 0 0.97444 1 10848 10848 0.79363 0 1 + 42123 25296 27960 28670 49539 49539 -0.04471739947325659 NHALDLYNTEI 11 Unmodified _NHALDLYNTEI_ 0 0 0 nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1 nc|ENSG00000078725|O60477-3|BRINP1 nc|ENSG00000078725|O60477-3|BRINP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8824462890625 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 32.589 1 32.46 31.96 32.96 -0.12915 0 0 0 0.9406 1 16974 16974 2.084 1.3863 1 42124 1252 27961 28671 49540 49540 -0.013567270243584062 NHDMTLTEF 9 Oxidation (M) _NHDM(Oxidation (M))TLTEF_ NHDM(1)TLTEF NHDM(58)TLTEF 0 0 1 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2404174804688 2 562.239864 1122.46517 0.27494 0.00015458 -1.3603 -0.00076483 -1.0854 -0.00061025 562.2389779726922 40.1 0.38001 40.1 39.812 40.192 0 33 18 2 0 0 0 0.025842 1 21434 21434 57.722 37.268 1 3115300 42125 489 27962 28672 49541 49541 70 -0.09115978293061744 NHFAAGGF 8 Unmodified _NHFAAGGF_ 0 0 0 nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM;MECOM|p.N445Rfs*14|1|0.39|ENSG00000085276|chr3:169115968-169115974|TTATTAT/-|frameshift_variant;nc|ENSG00000085276|Q03112-8|MECOM nc|ENSG00000085276|Q03112-5|MECOM nc|ENSG00000085276|Q03112-5|MECOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.6913757324219 2 410.69047 819.366387 0.69806 0.00028669 1.8557 0.00076211 2.5537 0.0010488 410.6909137856661 73.37 0.32497 72.894 72.717 73.042 -0.47588 23 14 2 0 0 0 0.81107 1 40210 40210 0 0 1 1188400 42126 1405 27963 28673 49542 49542 -0.05052168685142533 NHFSRLKIHF 10 Unmodified _NHFSRLKIHF_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 433.8606567382812 3 433.575401 1297.70437 1.5222 0.00066001 0.065302 2.8313E-05 1.5875 0.00068832 433.5753756299588 33.994 0.30939 30.008 29.824 30.133 -3.9853 29 16 2 0 0 0 0.23723 1 19544 19544 1.9064 0 1 8365700 42127 6931 27964 28674 49543 49543 0.06743009511069431 NHGFPIYT 8 Unmodified _NHGFPIYT_ 0 0 0 ENST00000481603.1_1_11:5631742-5632569:+|nuORF;nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 ENST00000481603.1_1_11:5631742-5632569:+|nuORF ENST00000481603.1_1_11:5631742-5632569:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7334899902344 2 474.732335 947.450116 0.41244 0.0001958 4.1051 0.0019488 4.5176 0.0021446 474.73424598523854 50.676 0.22565 50.676 50.518 50.744 0 14 10 2 0 0 0 0.78849 1 27931 27931 9.3474 0.75416 1 2166200 42128 3572 27965 28675 49544 49544 -0.0257105730809144 NHGFPIYT 8 Unmodified _NHGFPIYT_ 0 0 0 ENST00000481603.1_1_11:5631742-5632569:+|nuORF;nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 ENST00000481603.1_1_11:5631742-5632569:+|nuORF ENST00000481603.1_1_11:5631742-5632569:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 474.732335 947.450116 0.28056 0.00013319 3.6229 0.0017199 3.9034 0.0018531 474.7338115604166 51.111 0.20055 50.698 50.597 50.798 -0.41351 0.006103 -4.3833E-05 NaN 9.3474 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 777020 42129 3572 27965 28675 -0.0257105730809144 NHGFPIYT 8 Unmodified _NHGFPIYT_ 0 0 0 ENST00000481603.1_1_11:5631742-5632569:+|nuORF;nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 ENST00000481603.1_1_11:5631742-5632569:+|nuORF ENST00000481603.1_1_11:5631742-5632569:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 474.732335 947.450116 0.62129 0.00029495 3.042 0.0014441 3.6633 0.0017391 474.73439302136273 50.755 0.099892 50.701 50.628 50.728 -0.053871 0.0092115 -0.00059536 NaN 9.3474 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 569610 42130 3572 27965 28675 -0.0257105730809144 NHHIPQKY 8 Unmodified _NHHIPQKY_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2900390625 2 518.769783 1035.52501 0.33113 0.00017178 -0.061499 -3.1904E-05 0.26963 0.00013988 518.7696682005168 79.07 0.27129 78.584 78.436 78.708 -0.48596 17 11 2 0 0 0 8.7369 1 43305 43305 2.5775 0 1 613320 + 42131 18337 27966 28676 49545 49545 0.0086712522313519 NHHSDRDQR 9 Unmodified _NHHSDRDQR_ 0 0 0 REV__ENSG00000215853|ENST00000316073|RPTN REV__ENSG00000215853|ENST00000316073|RPTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2174987792969 3 388.84662 1163.51803 NaN NaN NaN NaN NaN NaN NaN 25.494 1 25.494 24.994 25.994 0 0 0 0 0.85798 1 13072 13072 0.23584 0 1 + 42132 24347 27967 28677 49546 49546 -0.057188393953765626 NHIFYRYTYIS 11 Unmodified _NHIFYRYTYIS_ 0 0 0 REV__ENSG00000139977|ENST00000556492|NAA30 REV__ENSG00000139977|ENST00000556492|NAA30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2465515136719 3 492.91386 1475.71975 NaN NaN NaN NaN NaN NaN NaN 19.546 1 19.574 19.074 20.074 0.028357 0 0 0 0.94307 1 9862 9862 0.08335 0 1 + 42133 20443 27968 28678 49547 49547 0.000918315176249962 NHIILSKKLK 10 Unmodified _NHIILSKKLK_ 0 0 0 REV__ENSG00000206043|ENST00000579455|C18orf63 REV__ENSG00000206043|ENST00000579455|C18orf63 MSMS AL20221201_MKP_PDAC_01 4 597.3912963867188 2 597.390065 1192.76558 NaN NaN NaN NaN NaN NaN NaN 109 1 102.82 102.32 103.32 -6.1757 0 0 0 1.0024 1 72820 72820 0.40072 0 1 + 42134 24248 27969 28679 49548 49548 0.17690521490499123 NHIVSHMKSYS 11 Unmodified _NHIVSHMKSYS_ 0 0 0 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8822021484375 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 16.574 1 16.579 16.079 17.079 0.0050564 0 0 0 0.93933 1 8317 8317 1.2148 0.10508 1 42135 8607 27970 28680 49549 49549 -0.020089434567353237 NHKCNCVLKDF 11 Unmodified _NHKCNCVLKDF_ 0 0 0 REV__ENSG00000135862|ENST00000258341|LAMC1 REV__ENSG00000135862|ENST00000258341|LAMC1 MSMS AL20221201_MKP_PDAC_01 4 440.8778076171875 3 440.877764 1319.61146 NaN NaN NaN NaN NaN NaN NaN 16.081 1 13.524 13.024 14.024 -2.557 0 0 0 0.93969 1 8305 8305 1.1098 0 1 + 42136 20103 27971 28681 49550 49550 -0.035559993288643454 NHKGHAYRR 9 Unmodified _NHKGHAYRR_ 0 0 0 ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2043762207031 3 380.204079 1137.59041 NaN NaN NaN NaN NaN NaN NaN 84.224 1 84.224 83.724 84.724 0 0 0 0 0.85798 1 46696 46696 0.23584 0 1 42137 6757 27972 28682 49551 49551 0.027115394688507877 NHLGQPTWF 9 Unmodified _NHLGQPTWF_ 0 0 0 REV__ENST00000562755.5_3_16:67562263-67562392:+|nuORF REV__ENST00000562755.5_3_16:67562263-67562392:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7730102539062 2 550.269616 1098.52468 -0.16369 -9.0076E-05 2.1727 0.0011956 2.0091 0.0011055 550.7723226255073 36.193 0.34303 36.218 36.053 36.396 0.024967 38 14 4 0 0 0 0.32871 1 19202 19202 15.847 4.2069 1 4928100 + 42138 28860 27973 28683 49552 49552 -0.020642944967448784 NHLKETFY 8 Unmodified _NHLKETFY_ 0 0 0 ENSG00000276747|ENST00000619609|PADI6 ENSG00000276747|ENST00000619609|PADI6 ENSG00000276747|ENST00000619609|PADI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5126953125 3 351.178425 1050.51345 0.031475 1.1053E-05 0.31412 0.00011031 0.34559 0.00012137 351.5126212705691 22.083 0.19115 22.096 22.017 22.208 0.013796 13 7 2 0 0 0 0.80676 1 11351 11351 1.6526 0 1 746690 42139 10918 27974 28684 49553 49553 -0.0097911659086094 NHLVTFFI 8 Unmodified _NHLVTFFI_ 0 0 0 ENST00000467358.5_1_21:45387463-45387571:+|nuORF ENST00000467358.5_1_21:45387463-45387571:+|nuORF ENST00000467358.5_1_21:45387463-45387571:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.793701171875 1 990.540729 989.533452 0.0019962 1.9773E-06 2.2325 0.0022114 2.2345 0.0022133 990.5434824314573 79.293 0.30353 79.293 79.142 79.446 0 23 12 3 0 0 0 0.80232 1 44002 44002 5.2307 0 1 1200200 42140 13777 27975 28685 49554 49554 0.03826679139774569 NHMKIHLCRKK 11 Unmodified _NHMKIHLCRKK_ 0 0 0 ENST00000504490.2_1_4:113277498-113277816:+|nuORF ENST00000504490.2_1_4:113277498-113277816:+|nuORF ENST00000504490.2_1_4:113277498-113277816:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.3947143554688 2 704.394833 1406.77511 NaN NaN NaN NaN NaN NaN NaN 94.892 1 94.524 94.024 95.024 -0.36814 0 0 0 0.94301 1 51836 51836 0.35063 0 1 42141 14496 27976 28686 49555 49555 0.08799643232714516 NHQFMQQEMFT 11 Unmodified _NHQFMQQEMFT_ 0 0 0 ENST00000505973.1_1_2:27821100-27852768:+|nuORF ENST00000505973.1_1_2:27821100-27852768:+|nuORF ENST00000505973.1_1_2:27821100-27852768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.8733825683594 3 480.872678 1439.59621 0.26819 0.00012897 1.3565 0.00065228 1.6246 0.00078125 480.87335529389344 83.704 0.33743 83.704 83.543 83.88 0 59 17 5 0 0 0 0.74203 1 46476 46476 0.08335 0 1 1086700 42142 14517 27977 28687 49556 49556 -0.10600910916673456 NHSFNRPQA 9 Unmodified _NHSFNRPQA_ 0 0 0 REV__ENSG00000081791|ENST00000432126|DELE1 REV__ENSG00000081791|ENST00000432126|DELE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.5111083984375 3 357.509056 1069.50534 NaN NaN NaN NaN NaN NaN NaN 28.793 1 28.731 28.231 29.231 -0.062159 0 0 0 0.84892 1 14873 14873 0.86438 0.40986 1 + 42143 17695 27978 28688 49557 49557 -0.026632507876229283 NHTFRTTFAA 10 Unmodified _NHTFRTTFAA_ 0 0 0 REV__ENSG00000115616|ENST00000233969|SLC9A2 REV__ENSG00000115616|ENST00000233969|SLC9A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7959594726562 2 583.291079 1164.56761 0.46819 0.00027309 1.5266 0.00089045 1.9948 0.0011635 583.7927616517982 83.689 0.52425 83.752 83.357 83.881 0.063171 28 19 2 0 0 0 0.22636 1 46185 46185 17.113 14.81 1 15477000 + 42144 18999 27979 28689 49558 49558 -0.008095244392734458 NHTGLRPSYP 10 Unmodified _NHTGLRPSYP_ 0 0 0 ENST00000302754.5_1_19:12903662-12904103:+|nuORF ENST00000302754.5_1_19:12903662-12904103:+|nuORF ENST00000302754.5_1_19:12903662-12904103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2941284179688 2 571.291079 1140.56761 0.48961 0.00027971 -1.846 -0.0010546 -1.3564 -0.00077489 571.2905712323061 52.206 0.75491 52.147 51.731 52.486 -0.058918 96 36 5 0 0 0 0.55245 1 28087 28087 13.615 1.3742 1 14325000 42145 11586 27980 28690 49559 49559 0.0029447556071318104 NHTKHRIYAA 10 Unmodified _NHTKHRIYAA_ 0 0 0 REV__ENSG00000125863|ENST00000347364|MKKS REV__ENSG00000125863|ENST00000347364|MKKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.825439453125 2 605.825621 1209.63669 -0.73844 -0.00044737 -0.80753 -0.00048922 -1.546 -0.00093659 605.8251487091834 18.136 0.16076 18.136 18.067 18.228 0 45 17 4 0 0 0 0.68371 1 8981 8981 8.1555 3.6267 1 3248500 + 42146 19521 27981 28691 49560 49560 0.04025559580304616 NHVKYLMRVL 10 Unmodified _NHVKYLMRVL_ 0 0 0 REV__CON__Q2KJ83 REV__CON__Q2KJ83 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8674926757812 2 636.8659 1271.71725 0.40598 0.00025855 0.60202 0.0003834 1.008 0.00064196 636.8662795156438 36.513 0.39586 32.23 32.094 32.49 -4.2835 37 24 2 0 0 0 0.64183 1 21484 21484 6.2058 0 1 18829000 + + 42147 16869 27982 28692 49561 49561 0.09225704578943805 NHWTRNWAK 9 Unmodified _NHWTRNWAK_ 0 0 0 REV__ENST00000515029.2_1_11:111256779-111267646:-|nuORF REV__ENST00000515029.2_1_11:111256779-111267646:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5145263671875 3 404.872218 1211.59482 -0.66125 -0.00026772 -0.39189 -0.00015867 -1.0531 -0.00042639 404.872032789055 15.596 0.10222 15.596 15.537 15.639 0 34 28 2 0 0 0 0.21893 1 7495 7495 0.23584 0.095952 1 629870 + 42148 28205 27983 28693 49562 49562 -0.0025099610827510332 NHYAINDRL 9 Unmodified _NHYAINDRL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8763427734375 3 372.524595 1114.55196 0.45309 0.00016879 4.1114 0.0015316 4.5645 0.0017004 372.5256141816467 27.15 0.087957 27.119 27.092 27.18 -0.031706 6 4 2 0 0 0 0.19994 1 14001 14001 8.1555 5.4203 1 10453000 42149 3189 27984 28694 49563 49563 -0.000738109563371836 NHYIQEAIY 9 Unmodified _NHYIQEAIY_ 0 0 0 nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1 nc|ENSG00000152092|O14525-3|ASTN1 nc|ENSG00000152092|O14525-3|ASTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.280517578125 2 575.780013 1149.54547 0.71926 0.00041414 0.077414 4.4573E-05 0.79668 0.00045871 576.2810842359644 43.642 0.88614 38.877 38.334 39.22 -4.7648 190 58 5 0 0 0 0.46501 1 26646 26646 9.3831 1.473 1 89517000 42150 6162 27985 28695 49564 49564 -0.02331748907704423 NHYWYQMY 8 Unmodified _NHYWYQMY_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3;TM9SF3|p.I134T|1|0.05|ENSG00000077147|chr10:96565324-96565324|A/G|missense_variant ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20221201_MKP_PDAC_01 4 602.748291015625 2 602.747659 1203.48076 NaN NaN NaN NaN NaN NaN NaN 23.441 1 20.663 20.163 21.163 -2.7784 0 0 0 0.97444 1 12689 12689 2.8892 0.58649 1 42151 1205 27986 28696 49565 49565 -0.11283646985339146 NIAGSLAIQ 9 Unmodified _NIAGSLAIQ_ 0 0 0 ENST00000326793.10_2_3:194997602-194997689:-|nuORF ENST00000326793.10_2_3:194997602-194997689:-|nuORF ENST00000326793.10_2_3:194997602-194997689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.5034790039062 1 886.499258 885.491981 0.22495 0.00019942 -0.11248 -9.9712E-05 0.11247 9.9704E-05 886.499220312302 50.106 0.29585 50.106 49.986 50.282 0 30 13 3 0 0 0 0.55144 1 27668 27668 4.3292 0 1 9909900 42152 11822 27987 28697 49566 49566 0.04465498380409372 NIDHLIFF 8 Unmodified _NIDHLIFF_ 0 0 0 REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2978210449219 2 509.77146 1017.52837 -0.30203 -0.00015397 0.53786 0.00027419 0.23583 0.00012022 509.77159369960543 60.541 0.40277 60.052 59.847 60.249 -0.48932 59 19 4 0 0 0 8.7369 1 32909 32909 6.3541 6.3541 1 133510000 + 42153 18373 27988 28698 49567 49567 0.020303752771496875 NIDPYIYTPF 10 Unmodified _NIDPYIYTPF_ 0 0 0 ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;ENSG00000160870|ENST00000336374|CYP3A7;nc|ENSG00000160870|P24462-2|CYP3A7;ENSG00000160868|ENST00000651514|CYP3A4 ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.306640625 2 621.805697 1241.59684 0.39488 0.00024554 -0.33041 -0.00020545 0.064465 4.0085E-05 621.8055643434088 92.986 0.21036 92.529 92.473 92.683 -0.45741 23 11 3 0 0 0 0.66569 1 50838 50838 6.7232 0.51738 1 660420 42154 6762 27989 28699 49568 49568 -0.014294249336899156 NIDSVLVTI 9 Unmodified _NIDSVLVTI_ 0 0 0 REV__PCDHB3|p.V444I|1|0.07|ENSG00000113205|chr5:141101979-141101979|G/A|missense_variant REV__PCDHB3|p.V444I|1|0.07|ENSG00000113205|chr5:141101979-141101979|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2820129394531 2 487.281857 972.549162 0.24844 0.00012106 0.47473 0.00023133 0.72317 0.00035239 487.2821178635583 63.56 0.26361 63.56 63.445 63.709 0 31 13 3 0 0 0 0.020973 1 35436 35436 62.573 3.8939 1 4361100 + 42155 30069 27990 28700 49569 49569 0.06178920866148019 NIELDNALEVY 11 Unmodified _NIELDNALEVY_ 0 0 0 REV__nc|ENSG00000032742|Q13099-3|IFT88 REV__nc|ENSG00000032742|Q13099-3|IFT88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5508117675781 3 431.550475 1291.6296 0.37098 0.0001601 1.6674 0.00071957 2.0384 0.00087967 431.55104902107996 27.697 0.15617 27.726 27.618 27.774 0.029102 14 6 3 0 0 0 0.46131 1 14408 14408 11.065 5.1971 1 5876400 + 42156 17150 27991 28701 49570 49570 -0.004552626014628913 NIEVIEWL 8 Unmodified _NIEVIEWL_ 0 0 0 nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7280578613281 2 508.276575 1014.5386 0.94565 0.00048065 -0.95271 -0.00048424 -0.0070619 -3.5894E-06 508.27609236755967 89.929 0.44274 83.753 83.508 83.951 -6.1757 41 24 2 0 0 0 8.7369 1 59291 59291 19.439 4.6007 1 15026000 42157 594 27992 28702 49571 49571 0.03190938211707817 NIFKLIFPY 9 Unmodified _NIFKLIFPY_ 0 0 0 ENST00000368679.8_1_10:127703528-127703642:-|nuORF ENST00000368679.8_1_10:127703528-127703642:-|nuORF ENST00000368679.8_1_10:127703528-127703642:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.3008422851562 2 577.83406 1153.65357 1.3597 0.00078566 0.57552 0.00033255 1.9352 0.0011182 577.8346558761552 100.13 0.21038 93.955 93.804 94.014 -6.1757 19 12 2 0 0 0 0.20727 1 66836 66836 7.9102 4.9149 1 17422000 42158 12281 27993 28703 49572 49572 0.08288667413535222 NIFNEYIL 8 Unmodified _NIFNEYIL_ 0 0 0 ENST00000549922.1_1_12:72962420-73015055:+|nuORF;ENSG00000072657|ENST00000261180|TRHDE ENST00000549922.1_1_12:72962420-73015055:+|nuORF;ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7679443359375 2 513.26875 1024.52295 0.642 0.00032952 -1.2716 -0.00065266 -0.62958 -0.00032314 513.2687417755453 75.171 0.36821 74.693 74.538 74.906 -0.47714 34 16 3 0 0 0 0.75262 1 41227 41227 12.532 3.1841 1 3190000 42159 15156;1089 27994 28704 49573 49573 0.011666516946661432 NIFPDRFPN 9 Unmodified _NIFPDRFPN_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2811279296875 2 560.282723 1118.55089 0.81448 0.00045634 -2.562 -0.0014354 -1.7475 -0.00097908 560.281386612731 30.053 0.30515 26.556 26.431 26.736 -3.497 21 14 2 0 0 0 0.032796 1 16946 16946 53.833 15.218 1 23267000 + 42160 20484 27995 28705 49574 49574 -0.003640253252342518 NIFPDRFPN 9 Unmodified _NIFPDRFPN_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.282723 1118.55089 -0.26319 -0.00014746 -3.1961 -0.0017907 -3.4593 -0.0019382 560.2809354303246 26.68 0.25216 26.68 26.551 26.803 0 0.062152 -0.00011369 NaN 53.833 36 11 4 NaN NaN NaN NaN 0 NaN NaN 0 5332300 + 42161 20484 27995 28705 -0.003640253252342518 NIFPDRFPN 9 Unmodified _NIFPDRFPN_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 560.282723 1118.55089 0.81448 0.00045634 -2.562 -0.0014354 -1.7475 -0.00097908 560.281386612731 30.053 0.30515 26.556 26.431 26.736 -3.497 -0.062152 0.0005969 NaN 53.833 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 23267000 + 42162 20484 27995 28705 -0.003640253252342518 NIFRHLNLF 9 Unmodified _NIFRHLNLF_ 0 0 0 ENST00000371335.4_1_X:119571049-119571103:-|nuORF ENST00000371335.4_1_X:119571049-119571103:-|nuORF ENST00000371335.4_1_X:119571049-119571103:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8302001953125 2 587.330008 1172.64546 0.27569 0.00016192 1.9961 0.0011724 2.2718 0.0013343 587.3315065469276 77.327 0.55154 77.378 76.959 77.51 0.050102 83 22 6 0 0 0 0.39863 1 42604 42604 12.532 3.9383 1 39560000 42163 12354 27996 28706 49575 49575 0.06604533216750497 NIFSSLKETI 10 Unmodified _NIFSSLKETI_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3206787109375 2 576.318971 1150.62339 0.92421 0.00053264 -1.92 -0.0011065 -0.99575 -0.00057387 576.317592997793 81.047 0.21879 80.554 80.422 80.641 -0.49248 16 10 2 0 0 0 0.47059 1 44346 44346 26.268 10.421 1 2524400 42164 8860 27997 28707 49576 49576 0.05410263957674033 NIFWLEPYMSQ 11 Unmodified _NIFWLEPYMSQ_ 0 0 0 REV__ENST00000305536.10_1_X:129547000-129547084:+|nuORF REV__ENST00000305536.10_1_X:129547000-129547084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 714.838134765625 2 714.336838 1426.65912 -0.36952 -0.00026396 -0.14959 -0.00010686 -0.51911 -0.00037082 714.3367869673044 32.715 0.21619 32.585 32.459 32.675 -0.12915 19 8 3 0 0 0 0.66968 1 17028 17028 7.1017 1.8048 1 3583800 + 42165 25367 27998 28708 49577 49577 -0.03714021856990257 NIFWLEPYMSQ 11 Unmodified _NIFWLEPYMSQ_ 0 0 0 REV__ENST00000305536.10_1_X:129547000-129547084:+|nuORF REV__ENST00000305536.10_1_X:129547000-129547084:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 714.336838 1426.65912 -0.36952 -0.00026396 -0.14959 -0.00010686 -0.51911 -0.00037082 714.3367869673044 32.715 0.21619 32.585 32.459 32.675 -0.12915 0 0 NaN 7.1017 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3583800 + 42166 25367 27998 28708 -0.03714021856990257 NIGEVVLSL 9 Unmodified _NIGEVVLSL_ 0 0 0 REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.27783203125 2 472.276575 942.538597 0.015579 7.3576E-06 -0.18043 -8.5213E-05 -0.16485 -7.7856E-05 472.27653074707564 71.618 0.29685 71.618 71.421 71.717 0 21 12 2 0 0 0 0.20428 1 39837 39837 22.736 3.4793 1 1098900 + 42167 27721 27999 28709 49578 49578 0.06502938211713172 NIGEVVLSL 9 Unmodified _NIGEVVLSL_ 0 0 0 REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2787780761719 2 472.276575 942.538597 0.63354 0.0002992 0.56224 0.00026553 1.1958 0.00056474 472.27689929521347 72.029 0.32316 71.552 71.363 71.686 -0.47609 20 12 2 0 0 0 0.070838 1 39406 39406 39.957 1.9833 1 1636400 + 42168 27721 27999 28709 49579 49579 0.06502938211713172 NIGEVVLSL 9 Unmodified _NIGEVVLSL_ 0 0 0 REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2764587402344 2 472.276575 942.538597 1.059 0.00050015 -0.74057 -0.00034975 0.31845 0.0001504 472.27625192405657 79.869 0.42375 73.693 73.518 73.942 -6.1757 42 25 2 0 0 0 0.044011 1 52470 52470 47.749 3.8904 1 17282000 + 42169 27721 27999 28709 49580 49580 0.06502938211713172 NIGEVVLSL 9 Unmodified _NIGEVVLSL_ 0 0 0 REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.276575 942.538597 0.015579 7.3576E-06 -0.18043 -8.5213E-05 -0.16485 -7.7856E-05 472.27653074707564 71.618 0.29685 71.618 71.421 71.717 0 0.032847 -0.00019142 NaN 39.957 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1098900 + 42170 27721 27999 28709 0.06502938211713172 NIGEVVLSL 9 Unmodified _NIGEVVLSL_ 0 0 0 REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF REV__ENST00000482490.5_1_3:64554138-64554207:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 472.276575 942.538597 0.63354 0.0002992 0.56224 0.00026553 1.1958 0.00056474 472.27689929521347 72.029 0.32316 71.552 71.363 71.686 -0.47609 -0.032847 0.00051007 NaN 39.957 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1636400 + 42171 27721 27999 28709 0.06502938211713172 NIHFGKTQIF 10 Unmodified _NIHFGKTQIF_ 0 0 0 REV__ENSG00000153294|ENST00000283303|ADGRF4 REV__ENSG00000153294|ENST00000283303|ADGRF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8285522460938 2 602.827298 1203.64004 0.12074 7.2783E-05 1.0111 0.00060952 1.1318 0.00068231 602.8279838919095 75.051 0.44646 75.097 74.92 75.367 0.045959 50 21 3 0 0 0 0.23548 2 41335 41335;41438 31.268 2.175 1 33531000 + 42172 21168 28000 28710 49581;49582 49581 0.046368096342803256 NIHFGKTQIF 10 Unmodified _NIHFGKTQIF_ 0 0 0 REV__ENSG00000153294|ENST00000283303|ADGRF4 REV__ENSG00000153294|ENST00000283303|ADGRF4 MSMS AL20221201_MKP_PDAC_01 4 602.8279418945312 2 602.827298 1203.64004 NaN NaN NaN NaN NaN NaN NaN 92.852 1 86.676 86.176 87.176 -6.1757 0 0 0 0.47175 1 61417 61417 27.629 2.2295 1 + 42173 21168 28000 28710 49583 49583 0.046368096342803256 NIHNVVAEF 9 Unmodified _NIHNVVAEF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.771240234375 2 521.769448 1041.52434 0.46949 0.00024496 0.39939 0.00020839 0.86887 0.00045335 521.7698603383107 50.537 0.27361 50.537 50.369 50.643 0 19 12 2 0 0 0 0.12424 1 27866 27866 30.637 13.694 1 1458600 42174 9805 28001 28711 49584 49584 0.005242857834218739 NIHYPTFCIF 10 Unmodified _NIHYPTFCIF_ 0 0 0 REV__ENSG00000078589|ENST00000171757|P2RY10 REV__ENSG00000078589|ENST00000171757|P2RY10 MSMS AL20221201_MKP_PDAC_01 4 627.8045654296875 2 627.802434 1253.59032 NaN NaN NaN NaN NaN NaN NaN 99.692 1 93.516 93.016 94.016 -6.1757 0 0 0 0.83398 1 66464 66464 10.824 0.024421 1 + 42175 17631 28002 28712 49585 49585 -0.02633641366037409 NIIFLVITL 9 Unmodified _NIIFLVITL_ 0 0 0 nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2;nc|ENSG00000117114|O95490-3|ADGRL2;nc|ENSG00000117114|O95490-4|ADGRL2;nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8401489257812 2 523.336436 1044.65832 1.0816 0.00056602 -0.46852 -0.00024519 0.61304 0.00032083 523.8389143384093 92.294 0.47894 86.118 85.773 86.252 -6.1757 66 28 3 0 0 0 0.047196 1 60962 60962 46.021 8.047 1 28848000 42176 3281 28003 28713 49586 49586 0.13777551556268008 NIIYEAYLF 9 Unmodified _NIIYEAYLF_ 0 0 0 nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.79443359375 2 573.297507 1144.58046 0.61923 0.000355 0.9265 0.00053116 1.5457 0.00088616 573.297805184947 52.047 0.23824 51.613 51.531 51.77 -0.43367 19 11 2 0 0 0 0.17718 1 28108 28108 20.454 3.5113 1 2107000 42177 6087 28004 28714 49587 49587 0.013954939002360334 NIIYLRRFKC 10 Unmodified _NIIYLRRFKC_ 0 0 0 nc|ENSG00000171962|Q9H069-2|DRC3;ENSG00000171962|ENST00000399187|DRC3 nc|ENSG00000171962|Q9H069-2|DRC3 nc|ENSG00000171962|Q9H069-2|DRC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.3794555664062 2 663.379175 1324.7438 NaN NaN NaN NaN NaN NaN NaN 73.808 1 73.852 73.352 74.352 0.043983 0 0 0 0.94014 1 40677 40677 6.2058 0.9089 1 42178 8167 28005 28715 49588 49588 0.09441393470274306 NIIYVYFPS 9 Unmodified _NIIYVYFPS_ 0 0 0 REV__ENST00000488325.5_1_6:32780676-32780880:-|nuORF REV__ENST00000488325.5_1_6:32780676-32780880:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2936401367188 2 558.292225 1114.5699 NaN NaN NaN NaN NaN NaN NaN 67.311 1 66.829 66.329 67.329 -0.48218 0 0 0 0.76439 1 36771 36771 7.2892 0.56607 1 + 42179 27842 28006 28716 49589 49589 0.017195112458011863 NIKIDGWRY 9 Unmodified _NIKIDGWRY_ 0 0 0 REV__ENSG00000175809|ENST00000323684|CBLL2 REV__ENSG00000175809|ENST00000323684|CBLL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8772583007812 3 388.876857 1163.60874 1.1953 0.00046482 -0.19812 -7.7044E-05 0.99717 0.00038777 388.87675373281377 18.821 0.94656 16.2 16.014 16.96 -2.6215 144 75 4 0 0 0 0.51371 1 9944 9944 6.6304 0 1 35599000 + 42180 22893 28007 28717 49590 49590 0.03348236600186283 NIKKLLKIPY 10 Unmodified _NIKKLLKIPY_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;nc|ENSG00000107938|Q3B7T1-4|EDRF1 ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 615.071533203125 2 615.402641 1228.79073 NaN NaN NaN NaN NaN NaN NaN 105.95 1 99.778 99.278 100.28 -6.1757 0 0 0 1.0019 1 70953 70953 0.45834 0 1 42181 2533 28008 28718 49591 49591 0.1854857629309663 NILEKHEAL 9 Unmodified _NILEKHEAL_ 0 0 0 REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2916259765625 2 533.798206 1065.58186 -0.057012 -3.0433E-05 -2.6078 -0.001392 -2.6648 -0.0014225 533.7980703712468 48.363 0.4424 48.363 48.112 48.555 0 78 21 5 0 0 0 0.41742 1 26436 26436 11.64 0 1 91256000 + 42182 19675 28009 28719 49592 49592 0.05169127988983746 NILEKHEAL 9 Unmodified _NILEKHEAL_ 0 0 0 REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF REV__ENST00000305368.8_1_5:111600591-111754802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2943725585938 2 533.798206 1065.58186 0.30758 0.00016418 -3.5086 -0.0018729 -3.2011 -0.0017087 533.7979794126318 48.591 0.34739 48.22 48.002 48.35 -0.37172 57 18 4 0 0 0 0.32871 1 26005 26005 15.847 4.2069 1 31340000 + 42183 19675 28009 28719 49593 49593 0.05169127988983746 NILKEYWWREY 11 Unmodified _NILKEYWWREY_ 0 0 0 REV__nc|ENSG00000110514|Q8WXG6-6|MADD REV__nc|ENSG00000110514|Q8WXG6-6|MADD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.8441772460938 2 800.401358 1598.78816 NaN NaN NaN NaN NaN NaN NaN 96.309 1 96.302 95.802 96.802 -0.007019 0 0 0 0.94307 1 53492 53492 0.30703 0.30703 1 + 42184 18710 28010 28720 49594 49594 0.012720760974616496 NILKEYWWREY 11 Unmodified _NILKEYWWREY_ 0 0 0 REV__nc|ENSG00000110514|Q8WXG6-6|MADD REV__nc|ENSG00000110514|Q8WXG6-6|MADD MSMS AL20221201_MKP_PDAC_01 4 800.4046020507812 2 800.401358 1598.78816 NaN NaN NaN NaN NaN NaN NaN 54.664 1 48.799 48.299 49.299 -5.8653 0 0 0 0.94165 1 34701 34701 1.3295 0.13619 1 + 42185 18710 28010 28720 49595 49595 0.012720760974616496 NINGVVKAY 9 Unmodified _NINGVVKAY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2757263183594 2 489.274367 976.53418 0.54211 0.00026524 2.5837 0.0012642 3.1259 0.0015294 489.27578296744474 39.658 0.32735 35.207 35.042 35.37 -4.4509 53 20 3 0 0 0 0.16226 1 23573 23573 26.884 5.137 1 51124000 42186 10367 28011 28721 49596 49596 0.04497473788796924 NIPEIVAVY 9 Unmodified _NIPEIVAVY_ 0 0 0 nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38 nc|nan|Q8TB03-2|CXorf38 nc|nan|Q8TB03-2|CXorf38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2847595214844 2 509.2844 1016.55425 -0.44418 -0.00022621 0.92451 0.00047084 0.48033 0.00024462 509.28505260471223 76.839 0.37666 76.359 76.163 76.54 -0.47945 30 17 2 0 0 0 0.28023 1 42023 42023 18.146 0.011366 1 3300300 42187 9408 28012 28722 49597 49597 0.04663224728756177 NIPKYDLL 8 Unmodified _NIPKYDLL_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5508422851562 1 975.550959 974.543683 0.576 0.00056192 -0.063559 -6.2005E-05 0.51244 0.00049991 975.5509191991231 73.047 0.26701 72.571 72.407 72.674 -0.47588 19 11 2 0 0 0 0.78849 1 40024 40024 9.3474 0.75416 1 821940 42188 5272 28013 28723 49598 49598 0.055392420743373805 NIQPFSAK 8 Unmodified _NIQPFSAK_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.747802734375 2 452.747985 903.481417 -0.7627 -0.00034531 0.1944 8.8015E-05 -0.5683 -0.0002573 452.74810477905004 32.271 0.28815 32.271 32.105 32.393 0 32 14 3 0 0 0 0.60622 1 16808 16808 25.399 0 1 14550000 42189 7545 28014 28724 49599 49599 0.02581515726001271 NIQWTMGFHF 10 Unmodified _NIQWTMGFHF_ 0 0 0 REV__nc|ENSG00000145113|Q99102-3|MUC4 REV__nc|ENSG00000145113|Q99102-3|MUC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.53564453125 3 427.534214 1279.58081 NaN NaN NaN NaN NaN NaN NaN 18.158 1 18.172 17.672 18.672 0.013865 0 0 0 0.99248 1 9083 9083 0.62683 0.17231 1 + 42190 20754 28015 28725 49600 49600 -0.047794096515644924 NIRDFLVEI 9 Unmodified _NIRDFLVEI_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3159790039062 2 559.813856 1117.61316 0.75825 0.00042448 -1.2194 -0.00068264 -0.46116 -0.00025817 559.8134610522419 82.757 0.22946 82.26 82.128 82.357 -0.49751 13 9 2 0 0 0 0.43515 1 45284 45284 10.8 1.2555 1 962440 42191 2180 28016 28726 49601 49601 0.05905701023107213 NIRKQSVANAF 11 Unmodified _NIRKQSVANAF_ 0 0 0 ENSG00000034971|ENST00000037502|MYOC ENSG00000034971|ENST00000037502|MYOC ENSG00000034971|ENST00000037502|MYOC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.346923828125 2 624.346386 1246.67822 NaN NaN NaN NaN NaN NaN NaN 76.226 1 76.274 75.774 76.774 0.047943 0 0 0 0.81193 1 42057 42057 11.495 4.8643 1 42192 610 28017 28727 49602 49602 0.06474695548968157 NISGSLESS 9 Unmodified _NISGSLESS_ 0 0 0 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 893.4232177734375 1 893.421067 892.413791 0.30211 0.00026991 2.911 0.0026007 3.2131 0.0028707 893.4232579558582 57.719 0.188 57.719 57.657 57.845 0 12 8 2 0 0 0 0.34999 1 32151 32151 14.838 0 1 995510 + 42193 23226 28018 28728 49603 49603 -0.036719789954531734 NISSNNWFFI 10 Unmodified _NISSNNWFFI_ 0 0 0 ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D ENSG00000205301|ENST00000511113|MGAT4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3007202148438 2 621.301113 1240.58767 0.25825 0.00016045 0.54395 0.00033796 0.8022 0.00049841 621.3013039133856 66.794 0.48335 66.311 66.15 66.633 -0.48323 53 22 3 0 0 0 0.56675 1 36429 36429 20.454 20.454 1 15493000 42194 10357 28019 28729 49604 49604 -0.022997734993168706 NITFENGTDLF 11 Unmodified _NITFENGTDLF_ 0 0 0 ENSG00000016490|ENST00000394711|CLCA1 ENSG00000016490|ENST00000394711|CLCA1 ENSG00000016490|ENST00000394711|CLCA1 MSMS AL20221201_MKP_PDAC_01 4 635.806640625 2 635.801143 1269.58773 NaN NaN NaN NaN NaN NaN NaN 98.527 1 92.352 91.852 92.852 -6.1757 0 0 0 0.77961 1 65362 65362 13.042 1.5478 1 42195 501 28020 28730 49605 49605 -0.036278182900105094 NITKKMDK 8 Unmodified _NITKKMDK_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2557373046875 2 489.276052 976.537551 -0.41862 -0.00020482 -1.2412 -0.00060728 -1.6598 -0.0008121 489.27556124554184 34.909 0.30201 34.909 34.714 35.016 0 33 15 3 0 0 0 8.7369 1 18376 18376 16.942 2.104 1 8461200 42196 9754 28021 28731 49606 49606 0.04834400571155584 NITKKMDK 8 Unmodified _NITKKMDK_ 0 0 0 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 ENSG00000196074|ENST00000357552|SYCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2761840820312 2 489.276052 976.537551 -0.17925 -8.7703E-05 0.032001 1.5657E-05 -0.14725 -7.2046E-05 489.27625487664534 35.062 0.24731 34.84 34.711 34.958 -0.2224 24 10 3 0 0 0 0.70294 1 18343 18343 16.942 1.1741 1 2938800 42197 9754 28021 28731 49607 49607 0.04834400571155584 NITLREDQL 9 Unmodified _NITLREDQL_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4;nc|ENSG00000149262|Q96HW7-3|INTS4;ENST00000433818.6_1_11:77629258-77692594:-|nuORF;ENST00000587624.5_1_7:64601607-64646883:+|nuORF;nc|ENSG00000149262|Q96HW7-2|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.816162109375 2 551.29857 1100.58259 0.17038 9.3933E-05 2.7793 0.0015322 2.9497 0.0016262 551.3005721960594 54.779 0.27932 54.312 54.182 54.461 -0.46664 27 13 3 0 0 0 0.19891 1 29651 29651 11.64 0 1 6241700 42198 5997 28022 28732 49608 49608 0.03631922638055585 NIVEKLREV 9 Unmodified _NIVEKLREV_ 0 0 0 ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.3272094726562 2 550.327131 1098.63971 NaN NaN NaN NaN NaN NaN NaN 42.034 1 42.034 41.534 42.534 0 0 0 0 0.20976 1 22729 22729 29.841 0 1 42199 4381 28023 28733 49609 49609 0.09433389914420331 NIVERVKEV 9 Unmodified _NIVERVKEV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3187255859375 2 543.319306 1084.62406 -0.5991 -0.0003255 0.036577 1.9873E-05 -0.56252 -0.00030563 543.3192557462139 30.502 0.24712 30.502 30.402 30.65 0 27 11 3 0 0 0 0.0084349 1 15849 15849 96.936 43.103 1 8939800 42200 4383 28024 28734 49610 49610 0.08513103397376653 NIVERVKEV 9 Unmodified _NIVERVKEV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5483093261719 3 362.548629 1084.62406 -0.72511 -0.00026289 1.4887 0.00053973 0.7636 0.00027684 362.8835745987291 30.508 0.22597 30.508 30.402 30.628 0 21 10 3 0 0 0 0.19361 1 15864 15864 23.79 13.639 1 3074100 42201 4383 28024 28734 49611 49611 0.08513103397376653 NIVERVKEV 9 Unmodified _NIVERVKEV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3192138671875 2 543.319306 1084.62406 0.82904 0.00045044 -0.47088 -0.00025584 0.35816 0.0001946 543.3191684456748 35.07 0.40204 30.975 30.735 31.137 -4.0951 58 23 3 0 0 0 0.0081563 2 20316 20191;20316 100.71 45.206 1 27200000 42202 4383 28024 28734 49612;49613 49613 0.08513103397376653 NIVERVKEV 9 Unmodified _NIVERVKEV_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5491638183594 3 362.548629 1084.62406 1.6113 0.00058416 -0.8885 -0.00032213 0.72277 0.00026204 362.5486148921036 35.03 0.43677 30.935 30.718 31.155 -4.0951 55 25 3 0 0 0 0.2289 1 20350 20350 20.581 2.2078 1 30539000 42203 4383 28024 28734 49614 49614 0.08513103397376653 NIVGEALLV 9 Unmodified _NIVGEALLV_ 0 0 0 REV__ENST00000462917.1_1_17:39846204-39847075:+|nuORF REV__ENST00000462917.1_1_17:39846204-39847075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 927.5551147460938 1 927.550959 926.543683 0.69519 0.00064483 1.3758 0.0012761 2.071 0.0019209 927.5525146994976 73.726 0.26146 73.726 73.568 73.83 0 16 10 2 0 0 0 0.08691 1 41018 41018 36.127 0 1 756990 + 42204 27345 28025 28735 49615 49615 0.07747242074322003 NIVGHAALNF 10 Unmodified _NIVGHAALNF_ 0 0 0 ENSG00000007952|ENST00000372966|NOX1 ENSG00000007952|ENST00000372966|NOX1 ENSG00000007952|ENST00000372966|NOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2883911132812 2 528.285266 1054.55598 0.33912 0.00017915 2.5791 0.0013625 2.9183 0.0015417 528.2872866242931 53.399 0.20465 52.947 52.841 53.046 -0.45173 19 9 3 0 0 0 0.62068 1 28887 28887 10.074 2.1638 1 1239300 42205 373 28026 28736 49616 49616 0.0308827853737057 NIVHDLPAA 9 Unmodified _NIVHDLPAA_ 0 0 0 nc|ENSG00000183527|O95456-2|PSMG1;ENSG00000183527|ENST00000331573|PSMG1;ENST00000411828.5_1_21:40547518-40555177:-|nuORF nc|ENSG00000183527|O95456-2|PSMG1 nc|ENSG00000183527|O95456-2|PSMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2573852539062 2 475.258717 948.50288 0.12404 5.895E-05 -0.58422 -0.00027766 -0.46019 -0.00021871 475.2585438415638 40.172 0.26576 40.172 40.03 40.295 0 23 12 3 0 0 0 0.094149 1 21579 21579 34.402 19.563 1 2744100 42206 9156 28027 28737 49617 49617 0.026569007546981993 NIVLWRQPLI 10 Unmodified _NIVLWRQPLI_ 0 0 0 CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;ENST00000588131.1_1_17:57785078-57812835:+|nuORF CACNG4-VMP1|1|fusion;ENST00000588131.1_1_17:57785078-57812835:+|nuORF CACNG4-VMP1|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.3849487304688 2 626.38224 1250.74993 NaN NaN NaN NaN NaN NaN NaN 102.91 1 102.86 102.36 103.36 -0.047928 0 0 0 1.0024 1 57156 57156 0.40072 0 1 42207 48;15644 28028 28738 49618 49618 0.13458234973472827 NIVNVPCD 8 Unmodified _NIVNVPCD_ 0 0 0 REV__ENSG00000284484|ENST00000640173|CPHXL2 REV__ENSG00000284484|ENST00000640173|CPHXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2102661132812 2 437.210378 872.406203 0.53992 0.00023606 -0.96584 -0.00042228 -0.42593 -0.00018622 437.2099907203477 59.896 0.3096 59.896 59.693 60.003 0 20 14 2 0 0 0 0.42423 1 33396 33396 42.095 11.87 1 1762700 + 42208 24698 28029 28739 49619 49619 -0.03510409796740532 NIVSRKEK 8 Unmodified _NIVSRKEK_ 0 0 0 nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2;ENST00000491694.1_1_3:111658417-111664240:+|nuORF nc|ENSG00000144824|Q86SQ0-2|PHLDB2 nc|ENSG00000144824|Q86SQ0-2|PHLDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2928466796875 2 487.293091 972.571629 0.49875 0.00024304 0.21347 0.00010402 0.71222 0.00034706 487.2929904723202 79.215 0.96804 79.27 79.079 80.047 0.05497 74 37 3 0 0 0 0.80992 1 43731 43731 0.69038 0 1 9405600 42209 5648 28030 28740 49620 49620 0.08424565054428967 NIWLWTGEV 9 Unmodified _NIWLWTGEV_ 0 0 0 REV__ENSG00000260314|ENST00000569591|MRC1 REV__ENSG00000260314|ENST00000569591|MRC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.286865234375 2 559.287474 1116.5604 NaN NaN NaN NaN NaN NaN NaN 42.568 1 42.568 42.068 43.068 0 0 0 0 0.33856 1 23054 23054 23.148 1.4018 1 + 42210 24577 28031 28741 49621 49621 0.0067774296028346726 NIWLYIYRKWH 11 Unmodified _NIWLYIYRKWH_ 0 0 0 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1591.35302734375 1 1591.85323 1590.84595 0.57482 0.00091503 -0.070447 -0.00011214 0.50437 0.00080289 1592.8559484644934 76.312 0.15982 70.136 70.041 70.201 -6.1757 9 8 2 0 0 0 0.30605 1 49891 49891 0 0 1 17310000 + 42211 29539 28032 28742 49622 49622 0.07416382813539713 NIWSAYDSCL 10 Unmodified _NIWSAYDSCL_ 0 0 0 REV__nc|ENSG00000104325|Q16698-2|DECR1 REV__nc|ENSG00000104325|Q16698-2|DECR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.1753234863281 3 391.174463 1170.50156 0.038853 1.5198E-05 1.1903 0.0004656 1.2291 0.0004808 391.509083736471 38.556 0.21916 38.573 38.484 38.703 0.01704 12 10 2 0 0 0 0.69064 1 20532 20532 1.9064 0 1 4534100 + 42212 18350 28033 28743 49623 49623 -0.07687101396345497 NIWSAYDSCL 10 Unmodified _NIWSAYDSCL_ 0 0 0 REV__nc|ENSG00000104325|Q16698-2|DECR1 REV__nc|ENSG00000104325|Q16698-2|DECR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.1749877929688 3 391.174463 1170.50156 1.2262 0.00047967 1.1248 0.00043998 2.351 0.00091965 391.17472804322784 42.48 0.45079 37.795 37.559 38.009 -4.6846 59 29 3 0 0 0 0.69064 1 25625 25625 1.9064 0.45126 1 37134000 + 42213 18350 28033 28743 49624 49624 -0.07687101396345497 NIYELIKTI 9 Unmodified _NIYELIKTI_ 0 0 0 REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF REV__ENST00000535664.5_1_12:65720686-65847531:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7793579101562 2 553.826432 1105.63831 0.86721 0.00048029 0.22293 0.00012346 1.0901 0.00060375 553.8264346965078 92.511 0.98358 86.335 85.823 86.806 -6.1757 177 60 4 0 0 0 0.49766 1 61011 61011 11.64 1.5664 1 476520000 + 42214 28532 28034 28744 49625 49625 0.08971755825677974 NIYILFPPLM 10 Unmodified _NIYILFPPLM_ 0 0 0 ENSG00000176742|ENST00000641270|OR51V1;nc|ENSG00000176742|Q9H2C8|OR51V1 ENSG00000176742|ENST00000641270|OR51V1 ENSG00000176742|ENST00000641270|OR51V1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.7748413085938 2 610.841028 1219.6675 0.854 0.00052166 -2.3884 -0.0014589 -1.5344 -0.00093729 610.8398246596395 99.226 0.072853 93.05 93.009 93.081 -6.1757 5 3 2 0 0 0 0.23227 1 66002 66002 10.824 3.5347 1 25663000 42215 8619 28035 28745 49626 49626 0.06645576850269208 NIYKWTVQEK 10 Unmodified _NIYKWTVQEK_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8505859375 2 654.85097 1307.68739 1.1386 0.00074564 -0.81387 -0.00053297 0.32476 0.00021267 654.8501941806238 52.461 0.23787 52.402 52.289 52.526 -0.058918 28 11 3 0 0 0 0.40136 1 28392 28392 21.537 2.175 1 5378500 42216 6406 28036 28746 49627 49627 0.045850441146058074 NIYTRCSRCR 10 Unmodified _NIYTRCSRCR_ 0 0 0 REV__nc|ENSG00000113615|O95486-2|SEC24A;REV__nc|ENSG00000138802|O95487-2|SEC24B REV__nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.30615234375 2 636.308423 1270.60229 0.18737 0.00011922 -3.1668 -0.0020151 -2.9794 -0.0018958 636.3061632839044 79.103 0.20092 78.617 78.529 78.73 -0.48595 18 8 3 0 0 0 0.67033 1 43335 43335 6.2058 0.9089 1 744400 + 42217 20372;18880 28037 28747 49628 49628 -0.022183478944953094 NKADVILKY 9 Unmodified _NKADVILKY_ 0 0 0 ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX;ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF ENST00000465253.1_1_Y:22737757-22750047:+|nuORF ENST00000465253.1_1_Y:22737757-22750047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3108520507812 2 532.310949 1062.60735 -0.042324 -2.253E-05 -0.11852 -6.3087E-05 -0.16084 -8.5617E-05 532.3108221698554 35.401 0.21161 35.401 35.285 35.496 0 15 10 2 0 0 0 0.0089732 1 18704 18704 86.332 34.702 1 5995300 42218 8353 28038 28748 49629 49629 0.07854602511406483 NKALGMGG 8 Unmodified _NKALGMGG_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1953735351562 2 374.194531 746.374509 0.070348 2.6324E-05 1.5373 0.00057525 1.6076 0.00060157 374.19542023310373 51.786 0.30236 51.728 51.533 51.835 -0.058918 30 14 3 0 0 0 0.80676 1 28022 28022 2.5775 0 1 2003800 42219 1970 28039 28749 49630 49630 -0.008823577600196586 NKATLGHF 8 Unmodified _NKATLGHF_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2413330078125 2 444.240327 886.466101 0.93808 0.00041673 0.48339 0.00021474 1.4215 0.00063147 444.24081308201033 56.956 0.61844 56.887 56.497 57.116 -0.068741 54 30 2 0 0 0 0.80676 1 30886 30886 2.5775 0 1 3614000 42220 5969 28040 28750 49631 49631 0.018326489288028824 NKCLGVLESLP 11 Unmodified _NKCLGVLESLP_ 0 0 0 REV__ENSG00000109805|ENST00000251496|NCAPG REV__ENSG00000109805|ENST00000251496|NCAPG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.7622985839844 3 391.549641 1171.62709 0.32671 0.00012792 -0.46749 -0.00018305 -0.14078 -5.5123E-05 391.5495396940083 48.051 0.39867 48.013 47.805 48.203 -0.038643 29 19 2 0 0 0 0.30217 1 25968 25968 2.4348 1.22 1 1019500 + 42221 18672 28041 28751 49632 49632 0.04814610459857249 NKCLHCEF 8 Unmodified _NKCLHCEF_ 0 0 0 ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 ENSG00000215421|ENST00000299687|ZNF407 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7499389648438 2 497.21768 992.420807 NaN NaN NaN NaN NaN NaN NaN 69.181 1 69.181 68.681 69.681 0 0 0 0 0.97444 1 38547 38547 2.5775 0 1 42222 10530 28042 28752 49633 49633 -0.07570660920248429 NKCLPGRF 8 Unmodified _NKCLPGRF_ 0 0 0 REV__ENSG00000182348|ENST00000333190|ZNF804B REV__ENSG00000182348|ENST00000333190|ZNF804B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7483520507812 2 467.750005 933.485456 0.66732 0.00031214 -3.684 -0.0017232 -3.0167 -0.0014111 467.74783823007385 47.411 0.30167 47.372 47.216 47.518 -0.038643 20 13 2 0 0 0 0.70294 1 25539 25539 16.942 1.0951 1 1051900 + 42223 23266 28043 28753 49634 49634 0.016052819480705693 NKDEIKAMME 10 Unmodified _NKDEIKAMME_ 0 0 0 REV__ENSG00000076201|ENST00000265562|PTPN23 REV__ENSG00000076201|ENST00000265562|PTPN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.7879028320312 2 604.786124 1207.55769 0.66033 0.00039936 0.65687 0.00039726 1.3172 0.00079662 604.7867250769696 71.635 0.31526 71.674 71.535 71.85 0.039024 44 14 4 0 0 0 0.62068 1 39417 39417 10.074 1.3285 1 12457000 + 42224 17584 28044 28754 49635 49635 -0.03778216551177138 NKDEVKAMI 9 Unmodified _NKDEVKAMI_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2781372070312 2 524.278792 1046.54303 NaN NaN NaN NaN NaN NaN NaN 46.138 1 45.801 45.301 46.301 -0.33664 0 0 0 0.032808 1 24683 24683 65.235 3.8776 1 42225 5553 28045 28755 49636 49636 0.021620793629836044 NKDWSSTCLF 10 Unmodified _NKDWSSTCLF_ 0 0 0 REV__nc|ENSG00000166359|Q6ZMY6-2|WDR88 REV__nc|ENSG00000166359|Q6ZMY6-2|WDR88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8504943847656 3 400.849979 1199.52811 0.0094959 3.8064E-06 1.0863 0.00043543 1.0958 0.00043924 400.8503300473536 51.851 0.22561 51.792 51.67 51.896 -0.058918 16 10 2 0 0 0 0.69064 1 28083 28083 1.9064 0 1 1501600 + 42226 22110 28046 28756 49637 49637 -0.06367412505051107 NKDWSSTCLF 10 Unmodified _NKDWSSTCLF_ 0 0 0 REV__nc|ENSG00000166359|Q6ZMY6-2|WDR88 REV__nc|ENSG00000166359|Q6ZMY6-2|WDR88 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2227478027344 3 400.849979 1199.52811 0.0094959 3.8064E-06 1.0863 0.00043543 1.0958 0.00043924 400.8503300473536 51.851 0.22561 51.792 51.67 51.896 -0.058918 16 10 2 0 0 0 0.23862 1 28099 28099 1.9064 0 1 1501600 + 42227 22110 28046 28756 49638 49638 -0.06367412505051107 NKEEDTDEP 9 Unmodified _NKEEDTDEP_ 0 0 0 REV__ENSG00000136492|ENST00000259008|BRIP1 REV__ENSG00000136492|ENST00000259008|BRIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.4830627441406 3 359.484131 1075.43056 NaN NaN NaN NaN NaN NaN NaN 37.303 1 37.324 36.824 37.824 0.021545 0 0 0 0.84021 1 19794 19794 2.7352 1.6637 1 + 42228 20165 28047 28757 49639 49639 -0.10413522900194039 NKEFFKNY 8 Unmodified _NKEFFKNY_ 0 0 0 nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1;ENSG00000171509|ENST00000307765|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 nc|ENSG00000171509|Q9HBX9-5|RXFP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.269287109375 2 545.271824 1088.5291 NaN NaN NaN NaN NaN NaN NaN 63.95 1 63.94 63.44 64.44 -0.010532 0 0 0 0.93587 1 34996 34996 13.508 4.9146 1 42229 8113 28048 28758 49640 49640 -0.011628300738038888 NKESVCLTEWY 11 Unmodified _NKESVCLTEWY_ 0 0 0 REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF REV__ENST00000441363.1_1_6:73973136-74009049:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.8800354003906 3 457.879827 1370.61765 1.2447 0.00056994 -0.27388 -0.0001254 0.97085 0.00044453 457.87932565489325 21.285 0.22923 18.564 18.443 18.672 -2.7214 29 17 3 0 0 0 0.50515 1 11392 11392 9.2438 0 1 4679500 + 42230 27086 28049 28759 49641 49641 -0.052832026162832335 NKFAAKNE 8 Unmodified _NKFAAKNE_ 0 0 0 REV__ENSG00000133800|ENST00000256178|LYVE1 REV__ENSG00000133800|ENST00000256178|LYVE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2428894042969 2 461.243067 920.47158 -0.51666 -0.00023831 0.76997 0.00035514 0.25331 0.00011684 461.2434008500384 20.336 0.22303 20.364 20.281 20.504 0.028357 13 12 2 0 0 0 0.79982 1 10295 10295 6.7232 0.96273 1 704020 + 42231 19934 28050 28760 49642 49642 0.008163277206108432 NKFANKHPP 9 Unmodified _NKFANKHPP_ 0 0 0 REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1968994140625 3 351.526047 1051.55631 -0.14951 -5.2556E-05 1.0849 0.00038136 0.93537 0.00032881 351.5264005398816 29.977 0.19671 30.007 29.894 30.091 0.030106 12 7 2 0 0 0 0.21473 1 15696 15696 2.4985 0.84587 1 776190 + 42232 25011 28051 28761 49643 49643 0.03259698257238597 NKFANKHPP 9 Unmodified _NKFANKHPP_ 0 0 0 REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF REV__ENST00000262061.6_1_12:54745377-54745464:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 351.526047 1051.55631 2.1009 0.00073853 0.42955 0.000151 2.5305 0.00088953 351.52623455924834 33.986 0.32631 30 29.824 30.15 -3.9853 -0.0035669 -0.00042053 NaN 2.4985 19 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3649800 + 42233 25011 28051 28761 0.03259698257238597 NKFEEDETR 9 Unmodified _NKFEEDETR_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8807373046875 3 389.847403 1166.52038 NaN NaN NaN NaN NaN NaN NaN 0.079748 1 0.079748 -0.42025 0.57975 0 0 0 0 0.85798 1 39 39 0.23584 0 1 42234 5772 28052 28762 49644 49644 -0.05621848500959459 NKFGAVTNEL 10 Unmodified _NKFGAVTNEL_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7883911132812 2 546.787838 1091.56112 0.69321 0.00037904 -0.3913 -0.00021396 0.30191 0.00016508 546.7876523615611 60.417 0.35529 60.417 60.225 60.581 0 47 15 4 0 0 0 0.07026 2 33652 33652;33758 53.833 10.06 1 13817000 + 42235 28732 28053 28763 49645;49646 49645 0.019005376093446102 NKFGAVTNEL 10 Unmodified _NKFGAVTNEL_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.787838 1091.56112 0.69321 0.00037904 -0.3913 -0.00021396 0.30191 0.00016508 546.7876523615611 60.417 0.35529 60.417 60.225 60.581 0 -0.033801 -0.00019975 NaN 53.833 47 15 4 NaN NaN NaN NaN 0 NaN NaN 0 13817000 + 42236 28732 28053 28763 0.019005376093446102 NKFGAVTNEL 10 Unmodified _NKFGAVTNEL_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.787838 1091.56112 -0.4037 -0.00022074 1.2192 0.00066665 0.8155 0.00044591 546.7886340333257 60.974 0.24516 60.485 60.353 60.598 -0.48932 0.033801 0.0015615 NaN 53.833 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6107000 + 42237 28732 28053 28763 0.019005376093446102 NKFLFFIAP 9 Unmodified _NKFLFFIAP_ 0 0 0 REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L REV__nc|ENSG00000181381|Q5H9U9-2|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2127685546875 3 366.211177 1095.6117 0.049487 1.8123E-05 4.487 0.0016432 4.5365 0.0016613 366.21217794617525 19.988 0.07551 19.996 19.946 20.022 0.0078487 6 3 2 0 0 0 0.61256 1 10197 10197 0.26902 0.1097 1 473700 + 42238 23201 28054 28764 49647 49647 0.06772111724990282 NKFVVSHLI 9 Unmodified _NKFVVSHLI_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8779296875 3 352.878198 1055.61277 -0.30438 -0.00010741 1.2842 0.00045315 0.97979 0.00034575 352.8785932130411 41.733 0.40867 41.731 41.64 42.049 -0.0017929 32 19 2 0 0 0 0.55775 1 22470 22470 2.2828 0.19677 1 9142100 42239 6247 28055 28765 49648 49648 0.08718326093912765 NKFVVSHLI 9 Unmodified _NKFVVSHLI_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000470300.5_1_1:247027247-247061635:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8789672851562 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 43.035 1 43.019 42.519 43.519 -0.015667 0 0 0 0.82739 1 23057 23057 2.4985 0.75621 1 42240 6247 28055 28765 49649 49649 0.08718326093912765 NKGFLNHK 8 Unmodified _NKGFLNHK_ 0 0 0 REV__ENSG00000170899|ENST00000370963|GSTA4 REV__ENSG00000170899|ENST00000370963|GSTA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 959.5294189453125 1 957.526476 956.519199 0.49258 0.00047166 -1.4703 -0.0014079 -0.97775 -0.00093623 957.5251969044249 67.737 0.3367 67.255 67.075 67.411 -0.48218 33 14 3 0 0 0 0.80232 1 36996 36996 5.2307 0 1 3241100 + 42241 22519 28056 28766 49650 49650 0.03920026711466562 NKGMDFLTCNF 11 Unmodified _NKGMDFLTCNF_ 0 0 0 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 REV__nc|ENSG00000136114|Q9NS62-3|THSD1 MSMS AL20221201_MKP_PDAC_01 4 430.5289001464844 3 430.526619 1288.55803 NaN NaN NaN NaN NaN NaN NaN 94.202 1 88.026 87.526 88.526 -6.1757 0 0 0 0.94184 1 62391 62391 0.40827 0.24894 1 + 42242 20138 28057 28767 49651 49651 -0.07470796831353255 NKHHFSMV 8 Unmodified _NKHHFSMV_ 0 0 0 ENST00000229340.9_1_12:120532979-120533294:-|nuORF ENST00000229340.9_1_12:120532979-120533294:-|nuORF ENST00000229340.9_1_12:120532979-120533294:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2455444335938 2 500.245086 998.47562 NaN NaN NaN NaN NaN NaN NaN 16.212 1 16.217 15.717 16.717 0.0050564 0 0 0 0.97444 1 8119 8119 2.0598 0 1 42243 11060 28058 28768 49652 49652 -0.023679060573158495 NKHRRPHL 8 Unmodified _NKHRRPHL_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.709228515625 3 353.209053 1056.60533 0.074717 2.6391E-05 3.7987 0.0013417 3.8734 0.0013681 353.21046044567066 28.155 0.10144 28.185 28.134 28.236 0.029566 5 3 2 0 0 0 8.7369 1 14626 14626 1.6526 0 1 959400 42244 5543 28059 28769 49653 49653 0.07929031336834669 NKIFNQAS 8 Unmodified _NKIFNQAS_ 0 0 0 REV__ENST00000261708.8_1_17:30214316-30221752:-|nuORF REV__ENST00000261708.8_1_17:30214316-30221752:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2432861328125 2 461.243067 920.47158 NaN NaN NaN NaN NaN NaN NaN 35.307 1 35.307 34.807 35.807 0 0 0 0 0.46711 1 18659 18659 43.858 9.7559 1 + 42245 25001 28060 28770 49654 49654 0.008163277206108432 NKIHMQLI 8 Unmodified _NKIHMQLI_ 0 0 0 ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1 ENST00000451484.6_1_1:151694382-151701309:+|nuORF ENST00000451484.6_1_1:151694382-151701309:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7862243652344 2 498.786587 995.558621 0.31001 0.00015463 -0.81132 -0.00040468 -0.50131 -0.00025005 498.78606376036726 82.011 0.31254 82.011 81.895 82.207 0 26 16 2 0 0 0 0.80992 1 45501 45501 0.69038 0 1 477520 42246 8775 28061 28771 49655 49655 0.06066410670666755 NKIHMQLI 8 Unmodified _NKIHMQLI_ 0 0 0 ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1 ENST00000451484.6_1_1:151694382-151701309:+|nuORF ENST00000451484.6_1_1:151694382-151701309:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7857666015625 2 498.786587 995.558621 0.39478 0.00019691 -0.77051 -0.00038432 -0.37573 -0.00018741 498.7860493488721 83.403 0.38576 82.905 82.764 83.15 -0.49751 34 15 3 0 0 0 0.80992 1 45742 45742 0.69038 0 1 800810 42247 8775 28061 28771 49656 49656 0.06066410670666755 NKILKSDR 8 Unmodified _NKILKSDR_ 0 0 0 REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF REV__ENST00000474162.1_1_5:60686735-60687614:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2934875488281 2 487.293091 972.571629 0.49875 0.00024304 0.21347 0.00010402 0.71222 0.00034706 487.2929904723202 79.215 0.96804 79.27 79.079 80.047 0.05497 74 37 3 0 0 0 0.79783 1 43851 43851 7.9102 7.9102 1 9405600 + 42248 27557 28062 28772 49657 49657 0.08424565054417599 NKKAPEHYLY 10 Unmodified _NKKAPEHYLY_ 0 0 0 nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1 nc|ENSG00000119946|Q9NRU3-2|CNNM1 nc|ENSG00000119946|Q9NRU3-2|CNNM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8294677734375 2 631.830037 1261.64552 NaN NaN NaN NaN NaN NaN NaN 97.232 1 96.989 96.489 97.489 -0.24277 0 0 0 1.0024 1 53095 53095 0.40072 0 1 42249 3483 28063 28773 49658 49658 0.02516488426090291 NKKERESRA 9 Unmodified _NKKERESRA_ 0 0 0 ENST00000288840.9_1_15:66994568-66994868:+|nuORF ENST00000288840.9_1_15:66994568-66994868:+|nuORF ENST00000288840.9_1_15:66994568-66994868:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2086181640625 3 373.207266 1116.59997 NaN NaN NaN NaN NaN NaN NaN 32.344 1 32.374 31.874 32.874 0.029743 0 0 0 0.83049 1 16980 16980 2.2828 1.0894 1 42250 11454 28064 28774 49659 49659 0.046332629637163336 NKKGKLHLKE 10 Unmodified _NKKGKLHLKE_ 0 0 0 ENST00000378434.8_1_13:48987048-48987225:-|nuORF ENST00000378434.8_1_13:48987048-48987225:-|nuORF ENST00000378434.8_1_13:48987048-48987225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2496948242188 3 398.915423 1193.72444 -0.080951 -3.2293E-05 -0.08147 -3.25E-05 -0.16242 -6.4792E-05 399.2499559867456 38.337 0.41203 38.355 38.11 38.522 0.01704 24 18 2 0 0 0 0.71042 1 20424 20424 1.7423 0 1 1984600 42251 12546 28065 28775 49660 49660 0.1353276045099392 NKKHVIQVF 9 Unmodified _NKKHVIQVF_ 0 0 0 REV__ENSG00000151503|ENST00000534548|NCAPD3 REV__ENSG00000151503|ENST00000534548|NCAPD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5422973632812 3 371.557348 1111.65021 0.32555 0.00012096 -0.069381 -2.5779E-05 0.25617 9.5182E-05 371.5573414778704 49.14 0.30828 49.097 48.927 49.235 -0.04369 22 14 2 0 0 0 0.2188 1 26466 26466 1.0715 0.10919 1 2371500 + 42252 21073 28066 28776 49661 49661 0.09885417359510029 NKKKIFKGH 9 Unmodified _NKKKIFKGH_ 0 0 0 ENST00000606893.5_1_6:110533295-110551331:+|nuORF;ENSG00000168438|ENST00000307731|CDC40 ENST00000606893.5_1_6:110533295-110551331:+|nuORF ENST00000606893.5_1_6:110533295-110551331:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2281494140625 3 367.229342 1098.6662 NaN NaN NaN NaN NaN NaN NaN 27.558 1 27.586 27.086 28.086 0.028664 0 0 0 0.85261 1 14325 14325 1.1933 0 1 42253 7764 28067 28777 49662 49662 0.12081123596408361 NKKLAKAR 8 Unmodified _NKKLAKAR_ 0 0 0 nc|ENSG00000197381|P78563-6|ADARB1;ENSG00000197381|ENST00000348831|ADARB1;nc|ENSG00000197381|P78563-3|ADARB1;nc|ENSG00000197381|P78563-4|ADARB1;nc|ENSG00000197381|P78563|ADARB1;nc|ENSG00000197381|P78563-5|ADARB1 nc|ENSG00000197381|P78563-6|ADARB1 nc|ENSG00000197381|P78563-6|ADARB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.8065490722656 2 464.806168 927.597784 1.1105 0.00051615 0.12827 5.9623E-05 1.2387 0.00057577 464.80623474805066 102.49 0.28304 96.318 96.204 96.487 -6.1757 67 42 2 0 0 0 0.80992 1 68783 68783 0.69038 0 1 9449100 42254 9946 28068 28778 49663 49663 0.1310887901655633 NKKLMNFAK 9 Unmodified _NKKLMNFAK_ 0 0 0 REV__nc|ENSG00000138380|Q8N187-3|CARF REV__nc|ENSG00000138380|Q8N187-3|CARF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8970947265625 3 365.211071 1092.61138 0.91598 0.00033453 -0.11888 -4.3415E-05 0.7971 0.00029111 365.2114080576073 24.359 0.40281 21.532 21.392 21.795 -2.8273 65 22 4 0 0 0 0.17275 1 13256 13256 20.415 0 1 21446000 + 42255 20326 28069 28779 49664 49664 0.0687836873348715 NKKRIPARE 9 Unmodified _NKKRIPARE_ 0 0 0 REV__ENST00000441379.5_1_21:46341018-46341171:+|nuORF REV__ENST00000441379.5_1_21:46341018-46341171:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.227294921875 3 371.228001 1110.66217 NaN NaN NaN NaN NaN NaN NaN 39.777 1 39.777 39.277 40.277 0 0 0 0 0.86031 1 21342 21342 0.23584 0 1 + 42256 27087 28070 28780 49665 49665 0.1112703410267386 NKKRRKRRNSG 11 Unmodified _NKKRRKRRNSG_ 0 0 0 REV__ENST00000361256.9_1_9:131591100-131591433:-|nuORF REV__ENST00000361256.9_1_9:131591100-131591433:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.8776245117188 4 350.717088 1398.83924 1.3671 0.00047946 -0.045758 -1.6048E-05 1.3213 0.00046341 350.71701700901485 18.245 0.25088 15.623 15.534 15.784 -2.6215 28 19 2 0 0 0 0.30587 1 9656 9656 1.2148 0.20126 1 2758900 + 42257 25919 28071 28781 49666 49666 0.15577882705542834 NKKSSRRLSC 10 Unmodified _NKKSSRRLSC_ 0 0 0 ENST00000489828.5_1_7:104909292-104937894:-|nuORF ENST00000489828.5_1_7:104909292-104937894:-|nuORF ENST00000489828.5_1_7:104909292-104937894:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2263793945312 3 393.552268 1177.63497 -0.27199 -0.00010704 1.9733 0.00077661 1.7014 0.00066957 393.55305736161506 37.262 0.18059 37.283 37.195 37.375 0.021545 13 7 2 0 0 0 0.23994 1 19723 19723 0.56317 0 1 1185400 42258 14246 28072 28782 49667 49667 0.05326182500039067 NKLEEFRQVLR 11 Unmodified _NKLEEFRQVLR_ 0 0 0 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.7071533203125 4 358.707126 1430.7994 -0.45342 -0.00016264 0.11533 4.1371E-05 -0.33808 -0.00012127 358.70721075240033 19.693 0.18357 19.693 19.593 19.777 0 80 31 3 0 0 0 0.74096 1 9843 9843 0.40827 0 1 2791100 + 42259 24349 28073 28783 49668 49668 0.10122898191593777 NKLEEFRQVLR 11 Unmodified _NKLEEFRQVLR_ 0 0 0 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.7071533203125 4 358.707126 1430.7994 -0.50873 -0.00018249 0.3469 0.00012444 -0.16183 -5.8051E-05 358.7072745719297 19.519 0.16078 19.547 19.473 19.634 0.028355 44 17 3 0 0 0 0.74096 1 9828 9828 0.40827 0 1 2488500 + 42260 24349 28073 28783 49669 49669 0.10122898191593777 NKLFIKLTR 9 Unmodified _NKLFIKLTR_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 566.8646240234375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 107.14 1 100.97 100.47 101.47 -6.1757 0 0 0 0.85798 1 71682 71682 0.52476 0 1 42261 8887 28074 28784 49670 49670 0.15222563427664682 NKLFIKLTR 9 Unmodified _NKLFIKLTR_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 566.865234375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 107.32 1 101.15 100.65 101.65 -6.1757 0 0 0 0.85798 1 71791 71791 0.52476 0 1 42262 8887 28074 28784 49671 49671 0.15222563427664682 NKLFIKLTR 9 Unmodified _NKLFIKLTR_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 566.8636474609375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 107.51 1 101.33 100.83 101.83 -6.1757 0 0 0 0.85798 1 71900 71900 0.52476 0 1 42263 8887 28074 28784 49672 49672 0.15222563427664682 NKLFIKLTR 9 Unmodified _NKLFIKLTR_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 566.8646240234375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.38 1 102.2 101.7 102.7 -6.1757 0 0 0 0.85798 1 72440 72440 0.52476 0 1 42264 8887 28074 28784 49673 49673 0.15222563427664682 NKLFIKLTR 9 Unmodified _NKLFIKLTR_ 0 0 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 566.8646850585938 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.73 1 102.56 102.06 103.06 -6.1757 0 0 0 0.85798 1 72655 72655 0.52476 0 1 42265 8887 28074 28784 49674 49674 0.15222563427664682 NKLFKVYIEL 10 Unmodified _NKLFKVYIEL_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9197387695312 3 422.920063 1265.73836 -0.17077 -7.2221E-05 -0.82414 -0.00034855 -0.99491 -0.00042077 422.919753509938 37.254 0.33423 37.276 37.108 37.442 0.021545 55 14 5 0 0 0 0.59286 1 19721 19721 11.518 0 1 40459000 42266 1949 28075 28785 49675 49675 0.11611993159476697 NKLKGKMK 8 Unmodified _NKLKGKMK_ 0 0 0 REV__ENST00000493881.1_1_3:148769856-148778584:-|nuORF REV__ENST00000493881.1_1_3:148769856-148778584:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.79931640625 2 473.796955 945.579357 1.0544 0.00049956 -0.73685 -0.00034912 0.31751 0.00015044 473.79689299254096 93.933 0.15986 87.758 87.663 87.823 -6.1757 21 8 4 0 0 0 0.78849 1 62183 62183 9.3474 9.3474 1 52065000 + 42267 17499 28076 28786 49676 49676 0.10439001050349361 NKLLPKHP 8 Unmodified _NKLLPKHP_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7950744628906 2 473.795269 945.575986 0.5669 0.00026859 -0.47641 -0.00022572 0.09049 4.2874E-05 473.7951939209042 58.462 0.50552 58.402 58.215 58.72 -0.060719 53 25 4 0 0 0 0.79669 1 31809 31809 8.5933 3.3626 1 10375000 42268 674 28077 28787 49677 49677 0.10102074267979333 NKLPPHES 8 Unmodified _NKLPPHES_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2431030273438 2 461.243067 920.47158 0.077618 3.5801E-05 -0.42151 -0.00019442 -0.34389 -0.00015862 461.24291991544675 20.433 0.17548 20.433 20.413 20.589 0 32 25 2 0 0 0 0.79887 1 10296 10296 7.2892 0 1 1109100 42269 1658 28078 28788 49678 49678 0.008163277206108432 NKLPPHES 8 Unmodified _NKLPPHES_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 461.243067 920.47158 0.077618 3.5801E-05 -0.42151 -0.00019442 -0.34389 -0.00015862 461.24291991544675 20.433 0.17548 20.433 20.413 20.589 0 0.034294 -0.00046587 NaN 7.2892 32 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1109100 42270 1658 28078 28788 0.008163277206108432 NKLPPHES 8 Unmodified _NKLPPHES_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 461.243067 920.47158 -0.51666 -0.00023831 0.76997 0.00035514 0.25331 0.00011684 461.2434008500384 20.336 0.22303 20.364 20.281 20.504 0.028357 -0.034294 0.00063325 NaN 7.2892 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 704020 42271 1658 28078 28788 0.008163277206108432 NKLQKHRK 8 Unmodified _NKLQKHRK_ 0 0 0 REV__ENSG00000142185|ENST00000397928|TRPM2 REV__ENSG00000142185|ENST00000397928|TRPM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2201232910156 3 351.220958 1050.64105 NaN NaN NaN NaN NaN NaN NaN 39.353 1 39.365 38.865 39.865 0.011452 0 0 0 0.97444 1 20957 20957 1.4819 0.41044 1 + 42272 20563 28079 28789 49679 49679 0.11775068793826904 NKLQLQWQL 9 Unmodified _NKLQLQWQL_ 0 0 0 FBXO36|p.R171W|1|0.08|ENSG00000153832|chr2:230010828-230010828|C/T|missense_variant FBXO36|p.R171W|1|0.08|ENSG00000153832|chr2:230010828-230010828|C/T|missense_variant FBXO36|p.R171W|1|0.08|ENSG00000153832|chr2:230010828-230010828|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8948364257812 3 390.892507 1169.65569 0.59689 0.00023332 2.7485 0.0010744 3.3454 0.0013077 390.8941273164045 58.285 0.19738 58.225 58.116 58.313 -0.060719 12 9 2 0 0 0 0.55144 1 31769 31769 2.4985 0.59211 1 2008200 42273 15893 28080 28790 49680 49680 0.07765096151319995 NKLVLSLE 8 Unmodified _NKLVLSLE_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2788696289062 2 458.279118 914.543683 NaN NaN NaN NaN NaN NaN NaN 44.552 1 44.53 44.03 45.03 -0.022064 0 0 0 0.9192 1 23907 23907 16.942 5.302 1 42274 1295 28081 28791 49681 49681 0.08299242074326685 NKLVLWNTI 9 Unmodified _NKLVLWNTI_ 0 0 0 REV__ENST00000464539.1_1_16:24833345-24835125:+|nuORF REV__ENST00000464539.1_1_16:24833345-24835125:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1820983886719 3 367.553603 1099.63898 NaN NaN NaN NaN NaN NaN NaN 34.628 1 34.656 34.156 35.156 0.027401 0 0 0 0.84369 1 18265 18265 1.1933 0 1 + 42275 17873 28082 28792 49682 49682 0.09314595265368553 NKLYIHLLAA 10 Unmodified _NKLYIHLLAA_ 0 0 0 REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3 REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.7251892089844 3 385.901003 1154.68118 0.56243 0.00021704 1.6756 0.0006466 2.238 0.00086364 385.9015174464718 65.209 0.26799 65.209 65.056 65.324 1.5259E-05 30 12 3 0 0 0 0.23993 1 35668 35668 0.62683 0.39098 1 5851800 + 42276 30048 28083 28793 49683 49683 0.1100257067378152 NKMLLLEILH 10 Unmodified _NKMLLLEILH_ 0 0 0 ENST00000554019.5_1_14:53110290-53130527:-|nuORF;ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF ENST00000554019.5_1_14:53110290-53130527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5768737792969 3 408.577531 1222.71076 -0.38299 -0.00015648 -0.31085 -0.000127 -0.69383 -0.00028348 408.577253444177 37.261 0.38363 37.283 37.153 37.537 0.021545 53 17 4 0 0 0 0.71042 1 19858 19858 1.7423 0.67081 1 7897800 42277 10024 28084 28794 49684 49684 0.10831766627575234 NKMLPMITT 9 Unmodified _NKMLPMITT_ 0 0 0 REV__nc|ENSG00000152578|P48058-2|GRIA4 REV__nc|ENSG00000152578|P48058-2|GRIA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1883239746094 3 350.189168 1047.54567 NaN NaN NaN NaN NaN NaN NaN 26.731 1 26.76 26.26 27.26 0.028664 0 0 0 0.83049 1 13875 13875 2.2828 0.80087 1 + 42278 29710 28085 28795 49685 49685 0.023802114962563792 NKNCRRHSLY 10 Unmodified _NKNCRRHSLY_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8885803222656 3 430.88765 1289.64112 NaN NaN NaN NaN NaN NaN NaN 45.93 1 45.902 45.402 46.402 -0.028011 0 0 0 1.0024 1 24696 24696 0.13989 0 1 42279 3844 28086 28796 49686 49686 0.007887007315275696 NKNWNDYRY 9 Unmodified _NKNWNDYRY_ 0 0 0 ENST00000554784.2_1_12:56775935-56776031:-|nuORF ENST00000554784.2_1_12:56775935-56776031:-|nuORF ENST00000554784.2_1_12:56775935-56776031:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.8638610839844 3 424.863388 1271.56833 0.41432 0.00017603 0.87589 0.00037213 1.2902 0.00054816 424.864040900928 48.214 0.29897 48.176 48.047 48.346 -0.038647 26 14 3 0 0 0 0.57757 1 25984 25984 2.7352 0.23671 1 1604700 42280 15219 28087 28797 49687 49687 -0.05658729790252437 NKPELHFSL 9 Unmodified _NKPELHFSL_ 0 0 0 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1989440917969 3 362.197708 1083.57129 -0.30444 -0.00011027 2.0801 0.0007534 1.7756 0.00064314 362.1984863326556 45.141 0.23299 45.141 44.976 45.209 0 15 11 2 0 0 0 0.51218 1 24563 24563 4.1895 0 1 5443800 42281 16056 28088 28798 49688 49688 0.032851453345756454 NKPKHQIIY 9 Unmodified _NKPKHQIIY_ 0 0 0 REV__nc|ENSG00000153707|P23468-2|PTPRD REV__nc|ENSG00000153707|P23468-2|PTPRD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8891296386719 3 380.888986 1139.64513 -0.25347 -9.6542E-05 1.3139 0.00050044 1.0604 0.0004039 380.8894729562063 34.022 0.30483 33.831 33.668 33.972 -0.19131 36 11 4 0 0 0 0.57757 1 17833 17833 2.7352 0.23671 1 15817000 + 42282 21179 28089 28799 49689 49689 0.08089113496907885 NKPMESLDL 9 Unmodified _NKPMESLDL_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2865600585938 2 523.762975 1045.5114 0.36595 0.00019167 1.298 0.00067982 1.6639 0.00087149 523.7643433635017 55.553 0.18643 55.075 55.005 55.192 -0.47798 12 8 2 0 0 0 0.19891 1 30172 30172 11.64 0 1 589530 42283 1809 28090 28800 49690 49690 -0.009539133909811426 NKPSYKEDKD 10 Unmodified _NKPSYKEDKD_ 0 0 0 REV__nc|ENSG00000054267|Q4LE39-4|ARID4B REV__nc|ENSG00000054267|Q4LE39-4|ARID4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5351257324219 3 408.534937 1222.58298 -0.4251 -0.00017367 0.44524 0.00018189 0.020131 8.2241E-06 408.53533882512204 36.538 0.34084 36.288 36.086 36.427 -0.2497 63 15 6 0 0 0 0.69377 1 19141 19141 1.7423 0.14999 1 68680000 + 42284 17281 28091 28801 49691 49691 -0.019407024327847466 NKQANAGPYL 10 Unmodified _NKQANAGPYL_ 0 0 0 ENST00000473515.5_1_6:108067761-108070999:-|nuORF;nc|ENSG00000146285|Q8N228-3|SCML4;nc|ENSG00000146285|Q8N228-2|SCML4;ENSG00000146285|ENST00000369020|SCML4 ENST00000473515.5_1_6:108067761-108070999:-|nuORF ENST00000473515.5_1_6:108067761-108070999:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.2224426269531 3 359.189212 1074.54581 0.93967 0.00033752 -2.0548 -0.00073807 -1.1151 -0.00040055 359.18850387913045 24.479 0.3893 21.651 21.519 21.908 -2.8273 36 21 2 0 0 0 0.23227 1 13353 13353 9.544 1.3884 1 3491500 42285 5771 28092 28802 49692 49692 0.011516708121462216 NKQIEIVFH 9 Unmodified _NKQIEIVFH_ 0 0 0 REV__nc|ENSG00000163814|Q9H5V8-3|CDCP1 REV__nc|ENSG00000163814|Q9H5V8-3|CDCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5458679199219 3 376.545108 1126.61349 NaN NaN NaN NaN NaN NaN NaN 56.702 1 56.633 56.133 57.133 -0.068737 0 0 0 0.82739 1 30852 30852 4.897 3.9347 1 + 42286 21819 28093 28803 49693 49693 0.055251207429591886 NKRCPPRNPD 10 Unmodified _NKRCPPRNPD_ 0 0 0 REV__nc|ENSG00000109472|P16870-2|CPE REV__nc|ENSG00000109472|P16870-2|CPE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8994445800781 3 399.536618 1195.58802 NaN NaN NaN NaN NaN NaN NaN 31.796 1 31.826 31.326 32.326 0.030106 0 0 0 0.97302 1 16676 16676 1.7423 0.14999 1 + 42287 18659 28094 28804 49694 49694 -0.0019467705112674594 NKRFDPRNRF 10 Unmodified _NKRFDPRNRF_ 0 0 0 REV__ENSG00000204165|ENST00000374251|CXorf65 REV__ENSG00000204165|ENST00000374251|CXorf65 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.5787048339844 3 450.577693 1348.71125 1.5325 0.00069052 1.2158 0.00054781 2.7483 0.0012383 450.57850689476624 46.51 0.28842 46.476 46.307 46.596 -0.033417 20 13 2 0 0 0 0.6966 1 25058 25058 1.5923 0.37745 1 1896200 + 42288 24141 28095 28805 49695 49695 0.05084322391644491 NKRIINMY 8 Unmodified _NKRIINMY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1960754394531 3 351.195421 1050.56443 NaN NaN NaN NaN NaN NaN NaN 25.539 1 25.539 25.039 26.039 0 0 0 0 0.97444 1 13096 13096 0.40072 0 1 + 42289 19178 28096 28806 49696 49696 0.04117509182356116 NKRKRYRKKIK 11 Unmodified _NKRKRYRKKIK_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 759.4972534179688 2 759.496793 1516.97903 1.6185 0.0012292 -0.61691 -0.00046854 1.0016 0.00076069 759.4960191447115 104.22 0.086845 98.044 98.001 98.088 -6.1757 7 4 2 0 0 0 0.7453 1 69827 69827 0 0 1 9649400 + 42290 17289 28097 28807 49697 49697 0.2412224699003218 NKRKRYRKKIK 11 Unmodified _NKRKRYRKKIK_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 759.49853515625 2 759.496793 1516.97903 1.6196 0.0012301 -0.32412 -0.00024617 1.2954 0.00098389 759.9978483083086 104.94 0.14837 98.765 98.68 98.828 -6.1757 26 10 3 0 0 0 0.7453 1 70227 70227 0 0 1 156950000 + 42291 17289 28097 28807 49698 49698 0.2412224699003218 NKRKRYRKKIK 11 Unmodified _NKRKRYRKKIK_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.6681518554688 3 506.666954 1516.97903 1.5104 0.00076528 -0.42 -0.0002128 1.0904 0.00055248 506.66675272757453 104.94 0.083664 98.763 98.705 98.789 -6.1757 8 5 2 0 0 0 0.7453 1 70246 70246 0 0 1 17997000 + 42292 17289 28097 28807 49699 49699 0.2412224699003218 NKRKRYRKKIK 11 Unmodified _NKRKRYRKKIK_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.668212890625 3 506.666954 1516.97903 1.5088 0.00076444 -0.21806 -0.00011048 1.2907 0.00065396 507.00114683440006 109.96 0.24681 103.79 103.57 103.82 -6.1757 92 60 2 0 0 0 0.7453 2 73298 73298;73406 0 0 1 4654400 + 42293 17289 28097 28807 49700;49701 49700 0.2412224699003218 NKRKSRVRH 9 Unmodified _NKRKSRVRH_ 0 0 0 ENST00000476018.2_1_10:50272746-50285321:-|nuORF;ENSG00000165633|ENST00000332853|VSTM4 ENST00000476018.2_1_10:50272746-50285321:-|nuORF ENST00000476018.2_1_10:50272746-50285321:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.2441711425781 3 394.242645 1179.70611 NaN NaN NaN NaN NaN NaN NaN 109.87 1 103.69 103.19 104.19 -6.1757 0 0 0 0.85798 1 73350 73350 0.23584 0 1 42294 7365 28098 28808 49702 49702 0.12344063319710585 NKRKVDKKKK 10 Unmodified _NKRKVDKKKK_ 0 0 0 ENSG00000189326|ENST00000446864|SPANXN4 ENSG00000189326|ENST00000446864|SPANXN4 ENSG00000189326|ENST00000446864|SPANXN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.4170532226562 2 636.417146 1270.81974 NaN NaN NaN NaN NaN NaN NaN 104.19 1 104.14 103.64 104.64 -0.048737 0 0 0 1.0024 1 57850 57850 0.40072 0.050084 1 42295 9743 28099 28809 49703 49703 0.19516113642066557 NKRKVLGK 8 Unmodified _NKRKVLGK_ 0 0 0 nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3 nc|ENSG00000132640|Q9Y2F9-2|BTBD3 nc|ENSG00000132640|Q9Y2F9-2|BTBD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.8142395019531 2 471.813993 941.613434 1.4375 0.00067822 0.033186 1.5658E-05 1.4707 0.00069387 471.8139459247988 103.02 0.2442 96.847 96.73 96.974 -6.1757 128 66 3 0 0 0 0.80992 1 69082 69082 0.69038 0 1 9546900 42296 4430 28100 28810 49704 49704 0.14029165533622745 NKRMFFYLLAS 11 Unmodified _NKRMFFYLLAS_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MSMS AL20221201_MKP_PDAC_01 4 695.3718872070312 2 695.371015 1388.72748 NaN NaN NaN NaN NaN NaN NaN 44.772 1 39.92 39.42 40.42 -4.852 0 0 0 0.88164 1 27370 27370 8.1555 0 1 + 42297 20108 28101 28811 49705 49705 0.04866267513557432 NKRRMYQI 8 Unmodified _NKRRMYQI_ 0 0 0 REV__nc|ENSG00000125952|P61244-3|MAX REV__nc|ENSG00000125952|P61244-3|MAX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8078002929688 2 554.805842 1107.59713 NaN NaN NaN NaN NaN NaN NaN 95.029 1 94.661 94.161 95.161 -0.36814 0 0 0 0.97444 1 51909 51909 2.5775 0.27475 1 + 42298 19531 28102 28812 49706 49706 0.04763716305183152 NKRWYFTR 8 Unmodified _NKRWYFTR_ 0 0 0 nc|ENSG00000129315|O60563-2|CCNT1;ENSG00000129315|ENST00000261900|CCNT1 nc|ENSG00000129315|O60563-2|CCNT1 nc|ENSG00000129315|O60563-2|CCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8777160644531 3 390.87708 1169.60941 1.0231 0.0003999 0.076281 2.9817E-05 1.0994 0.00042971 390.87707624597897 49.862 0.26239 49.814 49.665 49.927 -0.048824 36 12 4 0 0 0 0.80763 1 26928 26928 1.3295 0.25807 1 4605800 42299 4129 28103 28813 49707 49707 0.03139076039860811 NKSKCLVEKL 10 Unmodified _NKSKCLVEKL_ 0 0 0 REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.215087890625 3 387.893519 1160.65873 1.4904 0.00057813 0.38142 0.00014795 1.8718 0.00072608 387.8934477564491 94.003 0.11116 87.828 87.769 87.88 -6.1757 8 5 2 0 0 0 0.22941 1 62226 62226 3.0723 0 1 5908200 + 42300 22800 28104 28814 49708 49708 0.0848260321381531 NKSKPGGW 8 Unmodified _NKSKPGGW_ 0 0 0 ENSG00000056736|ENST00000288167|IL17RB;ENST00000475124.1_1_3:53892553-53899332:+|nuORF ENSG00000056736|ENST00000288167|IL17RB ENSG00000056736|ENST00000288167|IL17RB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2339172363281 2 437.232502 872.450451 0.52519 0.00022963 1.5252 0.00066688 2.0504 0.0008965 437.2330396882877 47.474 0.47453 47.474 47.149 47.623 0 48 21 3 0 0 0 0.80676 1 25963 25963 2.5775 0 1 2627300 42301 787 28105 28815 49709 49709 0.009123624117705731 NKSLFLLKL 9 Unmodified _NKSLFLLKL_ 0 0 0 REV__ENSG00000185070|ENST00000330753|FLRT2 REV__ENSG00000185070|ENST00000330753|FLRT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.2329711914062 3 359.233982 1074.68012 NaN NaN NaN NaN NaN NaN NaN 33.994 1 33.994 33.494 34.494 0 0 0 0 0.85261 1 17871 17871 1.1933 0 1 + 42302 23468 28106 28816 49710 49710 0.14576356304837645 NKSMLAARLNA 11 Unmodified _NKSMLAARLNA_ 0 0 0 REV__ENST00000460757.1_1_20:62406743-62407307:-|nuORF REV__ENST00000460757.1_1_20:62406743-62407307:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 594.8278198242188 2 594.829514 1187.64448 NaN NaN NaN NaN NaN NaN NaN 33.797 1 29.812 29.312 30.312 -3.9853 0 0 0 0.79635 1 19414 19414 12.241 3.6474 1 + 42303 19729 28107 28817 49711 49711 0.058159507855407355 NKSSATLL 8 Unmodified _NKSSATLL_ 0 0 0 ENSG00000162032|ENST00000566339|SPSB3;ENST00000564709.5_1_16:1827100-1828401:-|nuORF;ENST00000569380.5_1_16:1827975-1828401:-|nuORF ENSG00000162032|ENST00000566339|SPSB3 ENSG00000162032|ENST00000566339|SPSB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2401123046875 2 417.239993 832.465432 1.3065 0.00054513 -0.41909 -0.00017486 0.88743 0.00037027 417.2400135544888 87.215 0.41277 81.04 80.825 81.237 -6.1757 32 22 2 0 0 0 0.80311 1 57454 57454 4.756 1.8668 1 11596000 42304 6829 28108 28818 49712 49712 0.04249809489101608 NKTAGLFH 8 Unmodified _NKTAGLFH_ 0 0 0 REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1 REV__nc|ENSG00000114805|Q4KWH8-3|PLCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2413940429688 2 444.240327 886.466101 0.077581 3.4465E-05 0.85175 0.00037838 0.92933 0.00041285 444.24064296577734 56.256 0.51506 56.187 55.885 56.4 -0.068737 36 26 2 0 0 0 0.80676 1 30561 30561 2.5775 0 1 7207300 + 42305 29584 28109 28819 49713 49713 0.018326489288028824 NKTDVVLIL 9 Unmodified _NKTDVVLIL_ 0 0 0 nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.8135681152344 2 507.813325 1013.6121 0.54271 0.00027559 -0.12388 -6.2907E-05 0.41883 0.00021269 507.81323886425895 66.415 0.42096 66.415 66.195 66.616 0 50 18 4 0 0 0 0.032796 1 36981 36981 53.833 13.875 1 9482100 42306 7650 28110 28820 49714 49714 0.10583486654206808 NKTDVVLIL 9 Unmodified _NKTDVVLIL_ 0 0 0 nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8130187988281 2 507.813325 1013.6121 -0.092252 -4.6847E-05 0.20395 0.00010357 0.1117 5.6723E-05 507.81340123162994 66.685 0.34989 66.202 66.005 66.355 -0.48323 41 16 3 0 0 0 0.015445 2 36460 36358;36460 68.081 23.674 1 7796000 42307 7650 28110 28820 49715;49716 49716 0.10583486654206808 NKTDVVLIL 9 Unmodified _NKTDVVLIL_ 0 0 0 nc|ENSG00000167657|O43293-2|DAPK3;ENSG00000167657|ENST00000545797|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 nc|ENSG00000167657|O43293-2|DAPK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8143310546875 2 507.813325 1013.6121 0.97345 0.00049433 -0.49854 -0.00025316 0.47492 0.00024117 507.81321012141746 70.922 0.49933 64.747 64.443 64.943 -6.1757 39 25 2 0 0 0 0.078314 1 46326 46326 38.176 5.8701 1 28290000 42308 7650 28110 28820 49717 49717 0.10583486654206808 NKVAKAICIP 10 Unmodified _NKVAKAICIP_ 0 0 0 REV__ENST00000513817.5_1_10:111637546-111643934:-|nuORF REV__ENST00000513817.5_1_10:111637546-111643934:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.878662109375 3 352.879322 1055.61614 -0.035144 -1.2402E-05 -0.5773 -0.00020372 -0.61244 -0.00021612 352.8789432961905 41.044 0.86751 41.042 40.773 41.64 -0.0017929 66 41 2 0 0 0 0.69377 1 21823 21823 1.7423 0 1 5406600 + 42309 18592 28111 28821 49718 49718 0.09055252876237319 NKVGVAPL 8 Unmodified _NKVGVAPL_ 0 0 0 ENST00000540708.5_1_12:123466944-123467130:+|nuORF;ENST00000442210.2_1_12:123465790-123467130:+|nuORF;nc|ENSG00000182196|Q66PJ3-10|ARL6IP4;nc|ENSG00000182196|Q66PJ3-4|ARL6IP4 ENST00000540708.5_1_12:123466944-123467130:+|nuORF ENST00000540708.5_1_12:123466944-123467130:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2490539550781 2 399.247621 796.480688 -0.0031462 -1.2561E-06 2.3014 0.00091881 2.2982 0.00091755 399.2488763566195 37.772 0.70505 37.501 37.157 37.862 -0.27133 49 32 3 0 0 0 0.76859 1 19814 19814 11.114 0.93107 1 6225300 42310 13405 28112 28822 49719 49719 0.07430721076946156 NKVILVSFH 9 Unmodified _NKVILVSFH_ 0 0 0 REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8790893554688 3 352.878198 1055.61277 0.018416 6.4986E-06 1.7673 0.00062364 1.7857 0.00063014 352.8787528804053 45.572 0.35452 45.544 45.49 45.844 -0.028011 30 17 2 0 0 0 0.55144 1 24503 24503 2.4985 0 1 5597100 + 42311 26302 28113 28823 49720 49720 0.08718326093912765 NKVILVSFH 9 Unmodified _NKVILVSFH_ 0 0 0 REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8790588378906 3 352.878198 1055.61277 0.59199 0.0002089 1.3613 0.00048038 1.9533 0.00068928 352.878627901801 46.252 0.77294 46.218 45.799 46.572 -0.033421 56 36 2 0 0 0 0.55144 1 24841 24841 2.4985 0 1 5959600 + 42312 26302 28113 28823 49721 49721 0.08718326093912765 NKVILVSFH 9 Unmodified _NKVILVSFH_ 0 0 0 REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF REV__ENST00000379935.8_1_16:53485692-53485728:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8782653808594 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 44.778 1 44.756 44.256 45.256 -0.022064 0 0 0 0.84737 1 24034 24034 0.96228 0 1 + 42313 26302 28113 28823 49722 49722 0.08718326093912765 NKVKAQGR 8 Unmodified _NKVKAQGR_ 0 0 0 REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7723388671875 2 450.772326 899.530098 NaN NaN NaN NaN NaN NaN NaN 90.636 1 90.679 90.179 91.179 0.042175 0 0 0 0.97444 1 50418 50418 0.79363 0 1 + 42314 27337 28114 28824 49723 49723 0.07631429085756736 NKVLCGEIF 9 Unmodified _NKVLCGEIF_ 0 0 0 REV__nc|ENSG00000071054|O95819-4|MAP4K4 REV__nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.2933349609375 2 511.770603 1021.52665 0.6399 0.00032748 0.27521 0.00014084 0.91511 0.00046832 511.7708056386826 42.353 0.24308 37.669 37.521 37.764 -4.6846 18 15 2 0 0 0 0.19891 1 25580 25580 11.64 1.4569 1 10764000 + 42315 29503 28115 28825 49724 49724 0.01674998196881461 NKVPWNRLF 9 Unmodified _NKVPWNRLF_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1 ENSG00000100030|ENST00000215832|MAPK1 ENSG00000100030|ENST00000215832|MAPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8892822265625 3 391.889097 1172.64546 1.3215 0.00051788 0.93338 0.00036578 2.2549 0.00088366 391.88945583871254 88.571 0.51945 82.395 82.149 82.669 -6.1757 64 28 3 0 0 0 0.30562 1 58355 58355 11.495 1.3441 1 58381000 42316 1743 28116 28826 49725 49725 0.06604533216750497 NKVRVCGP 8 Unmodified _NKVRVCGP_ 0 0 0 ENST00000394071.6_2_14:74206920-74253898:-|nuORF ENST00000394071.6_2_14:74206920-74253898:-|nuORF ENST00000394071.6_2_14:74206920-74253898:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7408752441406 2 436.742179 871.469806 -0.022081 -9.6439E-06 -1.7233 -0.00075265 -1.7454 -0.0007623 436.7413557578078 69.392 0.29883 68.913 68.721 69.02 -0.47903 21 12 2 0 0 0 0.80676 1 37931 37931 2.5775 0.27475 1 1497200 42317 12725 28117 28827 49726 49726 0.028929954310228823 NKWGLHVFR 9 Unmodified _NKWGLHVFR_ 0 0 0 nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.2172546386719 3 386.217325 1155.63015 0.8406 0.00032466 -1.241 -0.00047931 -0.40043 -0.00015465 386.2167382310407 50.662 0.20596 50.248 50.112 50.318 -0.41351 16 9 2 0 0 0 0.58499 1 27285 27285 2.2828 0.3764 1 1449900 42318 2968 28118 28828 49727 49727 0.05855666419552108 NKWKFHLKD 9 Unmodified _NKWKFHLKD_ 0 0 0 nc|ENSG00000165417|P52655-2|GTF2A1;ENST00000298173.7_1_14:81646569-81676264:-|nuORF;ENSG00000165417|ENST00000553612|GTF2A1 nc|ENSG00000165417|P52655-2|GTF2A1 nc|ENSG00000165417|P52655-2|GTF2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5636291503906 3 405.892619 1214.65603 0.20237 8.214E-05 1.4158 0.00057466 1.6182 0.0006568 405.89300095687196 48.099 0.31438 48.061 47.869 48.184 -0.038647 46 15 4 0 0 0 0.50598 1 25898 25898 7.1017 0.90987 1 10617000 42319 7337 28119 28829 49728 49728 0.057285158711465556 NKWLYKNK 8 Unmodified _NKWLYKNK_ 0 0 0 ENSG00000175166|ENST00000310118|PSMD2;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENST00000460628.1_1_3:184020551-184021585:+|nuORF;ENST00000466987.1_1_3:184021130-184021370:+|nuORF ENSG00000175166|ENST00000310118|PSMD2 ENSG00000175166|ENST00000310118|PSMD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8977661132812 3 365.209948 1092.60801 0.89634 0.00032735 -2.276 -0.00083123 -1.3797 -0.00050388 365.2092418575794 24.21 0.068748 21.382 21.323 21.392 -2.8273 5 3 2 0 0 0 8.7369 1 13144 13144 5.7319 0 1 2139600 42320 8488 28120 28830 49729 49729 0.06541441951117122 NKYEDTTFHF 10 Unmodified _NKYEDTTFHF_ 0 0 0 nc|ENSG00000154263|Q8WWZ4-3|ABCA10 nc|ENSG00000154263|Q8WWZ4-3|ABCA10 nc|ENSG00000154263|Q8WWZ4-3|ABCA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8818359375 3 434.531415 1300.57242 0.69335 0.00030128 -0.011091 -4.8195E-06 0.68225 0.00029646 434.53181892855457 50.826 0.154 50.772 50.688 50.842 -0.053871 18 7 3 0 0 0 0.71123 2 27483 27483;27501 0.69767 0.24315 1 1833200 42321 16282 28121 28831 49730;49731 49730 -0.06584685087204889 NKYFRRPI 8 Unmodified _NKYFRRPI_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|130|1|anti-sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|130|1|anti-sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|130|1|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7199401855469 3 365.213692 1092.61925 -0.20294 -7.4117E-05 -1.3861 -0.00050623 -1.5891 -0.00058035 365.2112567204423 35.933 0.18844 35.958 35.845 36.033 0.024971 26 8 4 0 0 0 8.7369 1 18968 18968 3.5965 3.0905 1 2882700 42322 15913 28122 28832 49732 49732 0.07664264045274649 NKYLTAEAF 9 Unmodified _NKYLTAEAF_ 0 0 0 ENSG00000075618|ENST00000382361|FSCN1 ENSG00000075618|ENST00000382361|FSCN1 ENSG00000075618|ENST00000382361|FSCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7725219726562 2 528.771657 1055.52876 0.20604 0.00010895 1.1232 0.0005939 1.3292 0.00070285 528.7724086062027 63.453 0.26836 62.967 62.793 63.061 -0.48617 17 11 2 0 0 0 0.36964 1 34594 34594 13.906 0 1 1918600 42323 1162 28123 28833 49733 49733 0.00321750206330762 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.790771484375 2 478.792392 955.570232 0.48641 0.00023289 -0.65597 -0.00031408 -0.16956 -8.1184E-05 478.7920161468167 59.619 0.41895 59.619 59.4 59.819 0 28 18 2 0 0 0 0.25681 1 33324 33324 19.257 3.4098 1 1182100 42324 7991 28124 28834 49734 49734 0.09066930965661868 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7920227050781 2 478.792392 955.570232 0.25397 0.0001216 -0.57743 -0.00027647 -0.32346 -0.00015487 478.7924077356726 60.133 0.37341 59.643 59.392 59.766 -0.49079 48 18 3 0 0 0 0.040683 1 32738 32738 49.554 9.6046 1 11812000 42325 7991 28124 28834 49735 49735 0.09066930965661868 NLAEKLIGV 9 Unmodified _NLAEKLIGV_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.79248046875 2 478.792392 955.570232 0.71041 0.00034014 -0.73796 -0.00035333 -0.02755 -1.3191E-05 478.79245744943853 65.906 0.37231 59.73 59.525 59.898 -6.1757 36 21 2 0 0 0 0.025842 1 42843 42843 57.722 17.772 1 19572000 42326 7991 28124 28834 49736 49736 0.09066930965661868 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7852172851562 2 508.28018 1014.54581 0.35865 0.0001823 4.3882 0.0022304 4.7469 0.0024127 508.2813500184664 39.84 0.34873 39.84 39.681 40.03 0 36 17 4 0 0 0 0.036857 1 21337 21337 51.63 15.503 1 18583000 42327 1900;993 28125 28835 49737 49737 0.03911670812135526 NLAENISRV 9 Unmodified _NLAENISRV_ 0 0 0 nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB;nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL nc|ENSG00000068976|P11217-2|PYGM;ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.28369140625 2 508.28018 1014.54581 0.26095 0.00013264 0.7276 0.00036983 0.98856 0.00050247 508.280026170434 45.325 0.5184 40.37 40.164 40.682 -4.9549 51 35 2 0 0 0 0.029718 1 27698 27698 55.503 3.2344 1 39732000 42328 1900;993 28125 28835 49738 49738 0.03911670812135526 NLAHARWTF 9 Unmodified _NLAHARWTF_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2905883789062 2 558.290882 1114.56721 0.69735 0.00038932 -1.2944 -0.00072267 -0.59708 -0.00033335 558.7919939222919 26.674 0.2055 23.723 23.597 23.803 -2.9511 15 10 2 0 0 0 0.41742 1 14758 14758 11.64 2.2572 1 3379700 42329 7794 28126 28836 49739 49739 0.014511006314933184 NLAHARWTF 9 Unmodified _NLAHARWTF_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 558.290882 1114.56721 0.0064583 3.6056E-06 -0.65336 -0.00036477 -0.64691 -0.00036116 558.2906495717505 23.7 0.20308 23.7 23.588 23.791 0 -0.011415 0.00012304 NaN 11.64 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1405500 42330 7794 28126 28836 0.014511006314933184 NLAKCIVSV 9 Carbamidomethyl (C) _NLAKC(Carbamidomethyl (C))IVSV_ NLAKC(1)IVSV NLAKC(63)IVSV 0 1 0 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2842712402344 2 502.283877 1002.5532 0.256 0.00012859 0.14877 7.4723E-05 0.40477 0.00020331 502.2839313671418 46.713 0.23106 46.376 46.231 46.462 -0.33664 21 11 2 0 0 0 0.020973 1 24989 24989 62.573 31.936 1 7385200 42331 5264 28127 28837 49740 49740 542 0.052026870882059484 NLAKCIVSV 9 Carbamidomethyl (C) _NLAKC(Carbamidomethyl (C))IVSV_ NLAKC(1)IVSV NLAKC(93)IVSV 0 1 0 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7855529785156 2 502.283877 1002.5532 0.87443 0.00043921 0.040341 2.0263E-05 0.91477 0.00045947 502.2839730718357 52.431 0.39288 46.697 46.499 46.892 -5.7345 56 21 3 0 0 0 0.0082475 2 33032 33032;33150 92.653 34.87 1 116860000 42332 5264 28127 28837 49741;49742 49741 542 0.052026870882059484 NLAKCIVSV 9 Carbamidomethyl (C) _NLAKC(Carbamidomethyl (C))IVSV_ 0 1 0 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 ENSG00000140688|ENST00000327237|RUSF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.283877 1002.5532 1.0014 0.00050298 -0.088644 -4.4524E-05 0.91274 0.00045845 502.7850686718 46.402 0.20542 46.368 46.286 46.491 -0.033417 -0.11212 -0.00016273 NaN 92.653 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1258900 42333 5264 28127 28837 542 0.052026870882059484 NLANFLTEV 9 Unmodified _NLANFLTEV_ 0 0 0 REV__ENSG00000156395|ENST00000369701|SORCS3 REV__ENSG00000156395|ENST00000369701|SORCS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7723388671875 2 510.771657 1019.52876 0.30849 0.00015757 -0.42131 -0.00021519 -0.11282 -5.7624E-05 510.771512650793 83.668 0.36631 83.668 83.474 83.84 0 45 18 3 0 0 0 0.49272 1 46344 46344 7.9102 0 1 1344600 + 42334 21329 28128 28838 49743 49743 0.01977750206322071 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7726135253906 2 510.771657 1019.52876 0.30849 0.00015757 -0.42131 -0.00021519 -0.11282 -5.7624E-05 510.771512650793 83.668 0.36631 83.668 83.474 83.84 0 45 18 3 0 0 0 0.16226 1 46446 46446 26.884 9.9414 1 1344600 42335 7456 28129 28839 49744 49744 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7710876464844 2 510.771657 1019.52876 0.31785 0.00016235 -0.71377 -0.00036457 -0.39592 -0.00020222 510.77152845096475 84.138 0.47162 83.638 83.392 83.864 -0.49961 61 20 4 0 0 0 0.015445 1 46048 46048 68.081 28.123 1 6435700 42336 7456 28129 28839 49745 49745 0.019777502063448082 NLASFIEQV 9 Unmodified _NLASFIEQV_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7724304199219 2 510.771657 1019.52876 1.0697 0.00054637 0.16383 8.3681E-05 1.2335 0.00063005 510.7717618486723 97.11 0.63516 90.935 90.605 91.24 -6.1757 82 36 3 0 0 0 0.013041 3 64216 64216;64349;64502 71.922 19.654 1 32989000 42337 7456 28129 28839 49746;49747;49748 49746 0.019777502063448082 NLASRIPAA 9 Unmodified _NLASRIPAA_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MSMS AL20221201_MKP_PDAC_01 4 456.7664794921875 2 456.766709 911.518865 NaN NaN NaN NaN NaN NaN NaN 39.588 1 35.137 34.637 35.637 -4.4509 0 0 0 0.049786 1 23518 23518 57.722 12.022 1 42338 7692 28130 28840 49749 49749 0.05956606991605895 NLASTRKYF 9 Unmodified _NLASTRKYF_ 0 0 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53;ENST00000570359.1_1_17:440266-440455:-|nuORF nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.3018798828125 2 550.298373 1098.58219 0.37462 0.00020616 -0.040429 -2.2248E-05 0.3342 0.00018391 550.2982664255434 45.65 0.24043 45.65 45.527 45.768 0 42 11 5 0 0 0 0.41742 1 24953 24953 11.64 1.4569 1 17656000 42339 5308 28131 28841 49750 49750 0.03684547708826358 NLCPTRIEV 9 Carbamidomethyl (C) _NLC(Carbamidomethyl (C))PTRIEV_ NLC(1)PTRIEV NLC(56)PTRIEV 0 1 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2899780273438 2 551.289691 1100.56483 1.008 0.00055567 -0.76359 -0.00042096 0.24437 0.00013472 551.2893408776998 46.119 0.27445 46.119 45.957 46.232 0 22 12 2 0 0 0 0.029718 1 25154 25154 55.503 11.644 1 7042600 42340 9768 28132 28842 49751 49751 894 0.018568841115438772 NLCPTRIEV 9 Carbamidomethyl (C) _NLC(Carbamidomethyl (C))PTRIEV_ NLC(1)PTRIEV NLC(59)PTRIEV 0 1 0 nc|ENSG00000196141|Q9NUQ6-2|SPATS2L;ENSG00000196141|ENST00000409140|SPATS2L;nc|ENSG00000196141|Q9NUQ6-4|SPATS2L;nc|ENSG00000196141|Q9NUQ6-3|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L nc|ENSG00000196141|Q9NUQ6-2|SPATS2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2900390625 2 551.289691 1100.56483 0.38938 0.00021466 1.1571 0.00063792 1.5465 0.00085259 551.290860857168 51.966 0.54833 46.231 45.967 46.515 -5.7345 102 36 4 0 0 0 0.024189 1 32651 32651 59.368 7.1 1 311260000 42341 9768 28132 28842 49752 49752 894 0.018568841115438772 NLDCSRDFRPF 11 Unmodified _NLDCSRDFRPF_ 0 0 0 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 ENSG00000104290|ENST00000240093|FZD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2131958007812 3 457.215433 1368.62447 -0.4336 -0.00019825 -2.351 -0.0010749 -2.7846 -0.0012732 457.2142573268803 34.955 0.29434 34.733 34.6 34.895 -0.2224 27 12 3 0 0 0 0.71036 1 18293 18293 1.3296 0 1 1827500 42342 2190 28133 28843 49753 49753 -0.0450984494509612 NLDDRLRLF 9 Unmodified _NLDDRLRLF_ 0 0 0 REV__nc|ENSG00000061938|Q07912-2|TNK2;REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF REV__ENST00000464041.5_1_3:195605455-195619614:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3248291015625 2 581.32238 1160.63021 0.59826 0.00034778 3.0437 0.0017694 3.6419 0.0021171 581.3241285389469 76.81 0.28751 76.86 76.722 77.01 0.05011 17 11 2 0 0 0 0.53557 1 42408 42408 8.5933 1.304 1 1357100 + 42343 17336;27365 28134 28844 49754 49754 0.056316216288678334 NLDEDYQREG 10 Unmodified _NLDEDYQREG_ 0 0 0 ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266 ENSG00000169758|ENST00000388942|TMEM266 ENSG00000169758|ENST00000388942|TMEM266 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7659912109375 2 619.767831 1237.52111 NaN NaN NaN NaN NaN NaN NaN 20.788 1 20.788 20.288 21.288 0 0 0 0 0.98312 1 10477 10477 2.4985 0.65425 1 42344 7912 28135 28845 49755 49755 -0.08815053851935772 NLDEHHPRLF 10 Unmodified _NLDEHHPRLF_ 0 0 0 ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-2|ITGA10;ENST00000468261.1_1_1:145525044-145528351:+|nuORF ENSG00000143127|ENST00000369304|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 MSMS AL20221201_MKP_PDAC_01 4 639.3243408203125 2 639.322911 1276.63127 NaN NaN NaN NaN NaN NaN NaN 101.74 1 95.568 95.068 96.068 -6.1757 0 0 0 0.63617 1 68291 68291 29.082 14.243 1 42345 5465 28136 28846 49756 49756 0.004018359977862929 NLDEITMQDF 10 Unmodified _NLDEITMQDF_ 0 0 0 REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF REV__ENST00000580649.1_1_17:73035029-73035402:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.1846008300781 3 409.185028 1224.53325 NaN NaN NaN NaN NaN NaN NaN 90.699 1 84.523 84.023 85.023 -6.1757 0 0 0 0.97302 1 59925 59925 1.7423 0 1 + 42346 22258 28137 28847 49757 49757 -0.07003153433083753 NLDFVLSFLK 10 Unmodified _NLDFVLSFLK_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3414306640625 2 598.339707 1194.66486 0.5134 0.00030719 -1.4404 -0.00086184 -0.92698 -0.00055465 598.3386849213316 56.897 0.37636 56.829 56.578 56.955 -0.068741 63 18 5 0 0 0 0.42143 1 30995 30995 20.415 4.5674 1 64889000 42347 5017 28138 28848 49758 49758 0.0753144471698306 NLDLEEDEEEK 11 Unmodified _NLDLEEDEEEK_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8678588867188 3 454.868421 1361.58343 NaN NaN NaN NaN NaN NaN NaN 7.7589 1 7.7741 7.2741 8.2741 0.015238 0 0 0 0.94313 1 3869 3869 0.073264 0 1 + 42348 29498 28139 28849 49759 49759 -0.08289372294234454 NLDTGHPVFF 10 Unmodified _NLDTGHPVFF_ 0 0 0 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1;ENSG00000121297|ENST00000240587|TSHZ3 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8575439453125 3 382.857463 1145.55056 -1.0513 -0.0004025 1.2246 0.00046886 0.17332 6.6359E-05 382.8578986123596 32.342 0.72423 32.342 31.72 32.444 0 80 36 3 0 0 0 0.69917 1 16703 16703 1.4551 0.38366 1 4203600 42349 8876 28140 28850 49760 49760 -0.016394450450889053 NLDTWEWNELI 11 Unmodified _NLDTWEWNELI_ 0 0 0 ENSG00000165516|ENST00000298307|KLHDC2;ENST00000555739.5_1_14:50246474-50249278:+|nuORF ENSG00000165516|ENST00000298307|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.8385620117188 2 716.840799 1431.66705 -0.007885 -5.6523E-06 -1.1619 -0.00083292 -1.1698 -0.00083858 717.3415594531278 97.605 0.41608 97.605 97.373 97.789 0 46 16 4 0 0 0 0.67477 1 53874 53874 12.241 6.5088 1 1737600 42350 7353 28141 28851 49761 49761 -0.031521713358642955 NLDVPHSYSV 10 Unmodified _NLDVPHSYSV_ 0 0 0 ENSG00000150593|ENST00000280154|PDCD4;nc|ENSG00000150593|Q53EL6-2|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 ENSG00000150593|ENST00000280154|PDCD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.3087158203125 2 565.77747 1129.54039 0.30129 0.00017047 -0.94622 -0.00053535 -0.64493 -0.00036489 565.7768869268587 78.038 0.39568 78.038 77.731 78.127 0 22 17 2 0 0 0 0.23896 1 43336 43336 3.5965 0.70727 1 636250 42351 6060 28142 28852 49762 49762 -0.019200527703333137 NLDYKPHFL 9 Unmodified _NLDYKPHFL_ 0 0 0 REV__CON__Q3KUS7 REV__CON__Q3KUS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.8004150390625 2 573.800749 1145.58694 0.18219 0.00010454 -1.7316 -0.0009936 -1.5494 -0.00088905 573.7999115052706 54.619 0.27683 54.153 54.025 54.302 -0.46664 21 13 2 0 0 0 0.12841 1 29592 29592 30.225 3.3412 1 5897100 + + 42352 16875 28143 28853 49763 49763 0.01997431851600595 NLDYKPHFL 9 Unmodified _NLDYKPHFL_ 0 0 0 REV__CON__Q3KUS7 REV__CON__Q3KUS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.8007202148438 2 573.800749 1145.58694 NaN NaN NaN NaN NaN NaN NaN 57.62 1 57.13 56.63 57.63 -0.48974 0 0 0 0.6306 1 31316 31316 11.64 0 1 + + 42353 16875 28143 28853 49764 49764 0.01997431851600595 NLDYKPHFL 9 Unmodified _NLDYKPHFL_ 0 0 0 REV__CON__Q3KUS7 REV__CON__Q3KUS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7977905273438 2 573.800749 1145.58694 0.78047 0.00044783 -2.0159 -0.0011567 -1.2354 -0.00070887 573.7998112221941 57.249 0.32118 57.183 56.998 57.319 -0.066036 26 15 2 0 0 0 0.23158 1 31149 31149 20.454 1.1966 1 4631700 + + 42354 16875 28143 28853 49765 49765 0.01997431851600595 NLDYKPHFL 9 Unmodified _NLDYKPHFL_ 0 0 0 REV__CON__Q3KUS7 REV__CON__Q3KUS7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.800749 1145.58694 0.18219 0.00010454 -1.7316 -0.0009936 -1.5494 -0.00088905 573.7999115052706 54.619 0.27683 54.153 54.025 54.302 -0.46664 0 0 NaN 30.225 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5897100 + + 42355 16875 28143 28853 0.01997431851600595 NLDYSYRW 8 Unmodified _NLDYSYRW_ 0 0 0 REV__ENSG00000149256|ENST00000278550|TENM4;REV__nc|ENSG00000145934|Q9NT68-2|TENM2;REV__ENSG00000009694|ENST00000371130|TENM1 REV__ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7584838867188 2 558.759081 1115.50361 1.097 0.00061293 -0.69283 -0.00038713 0.40412 0.00022581 558.7587396237494 42.482 0.11115 37.797 37.721 37.832 -4.6846 10 7 2 0 0 0 0.74163 1 25669 25669 13.508 1.8676 1 11348000 + 42356 20987;29683;17034 28144 28854 49766 49766 -0.049523045962587275 NLEAQVIF 8 Unmodified _NLEAQVIF_ 0 0 0 ENST00000547721.1_1_12:76427119-76427344:+|nuORF ENST00000547721.1_1_12:76427119-76427344:+|nuORF ENST00000547721.1_1_12:76427119-76427344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2566223144531 2 467.255643 932.496732 0.45882 0.00021439 0.18403 8.5989E-05 0.64285 0.00030038 467.2558828896549 61.99 0.35844 61.503 61.345 61.704 -0.48764 26 16 2 0 0 0 0.75262 1 33848 33848 12.532 0 1 2650200 42357 15127 28145 28855 49767 49767 0.02778382523183609 NLEEILIY 8 Unmodified _NLEEILIY_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7779235839844 2 503.776408 1005.53826 0.22365 0.00011267 0.17547 8.8398E-05 0.39912 0.00020107 503.7766055408581 71.654 0.37434 71.654 71.466 71.84 0 39 16 3 0 0 0 0.6895 2 39855 39855;39953 18.135 0 1 2013600 42358 7527 28146 28856 49768;49769 49768 0.035715184918672094 NLEEKQWQLD 10 Unmodified _NLEEKQWQLD_ 0 0 0 nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1;nc|ENSG00000135596|Q8TDZ2-3|MICAL1 nc|ENSG00000135596|Q8TDZ2-2|MICAL1 nc|ENSG00000135596|Q8TDZ2-2|MICAL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8818664550781 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 34.675 1 34.484 33.984 34.984 -0.19131 0 0 0 0.95639 1 18127 18127 5.4027 0.68679 1 42359 4723 28147 28857 49770 49770 -0.013567270243811436 NLEFATNYSK 10 Unmodified _NLEFATNYSK_ 0 0 0 REV__nc|ENSG00000136688|Q9NZH8-2|IL36G REV__nc|ENSG00000136688|Q9NZH8-2|IL36G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7904052734375 2 593.790578 1185.5666 NaN NaN NaN NaN NaN NaN NaN 41.242 1 41.242 40.742 41.742 0 0 0 0 0.5282 1 22223 22223 22.736 0 1 + 42360 20172 28148 28858 49771 49771 -0.018757835988708393 NLEIIRGRT 9 Unmodified _NLEIIRGRT_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR;nc|ENSG00000146648|P00533-4|EGFR;nc|ENSG00000146648|P00533-3|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MSMS AL20221201_MKP_PDAC_01 4 536.31884765625 2 536.317097 1070.61964 NaN NaN NaN NaN NaN NaN NaN 93.933 1 87.757 87.257 88.257 -6.1757 0 0 0 0.20153 1 62208 62208 30.637 3.7529 1 42361 5788 28149 28859 49772 49772 0.08715638974490503 NLEKLAEHF 9 Unmodified _NLEKLAEHF_ 0 0 0 ENSG00000171943|ENST00000367123|SRGAP2C ENSG00000171943|ENST00000367123|SRGAP2C ENSG00000171943|ENST00000367123|SRGAP2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.529296875 3 367.529346 1099.56621 -0.60109 -0.00022092 -0.61555 -0.00022623 -1.2166 -0.00044715 367.5290570202199 16.621 0.14283 16.621 16.545 16.688 0 55 36 2 0 0 0 0.58865 1 8083 8083 1.0715 0.29493 1 983510 42362 8163 28150 28860 49773 49773 0.02040841471944077 NLELQTLDLF 10 Unmodified _NLELQTLDLF_ 0 0 0 REV__nc|ENSG00000175471|Q6DN14-4|MCTP1 REV__nc|ENSG00000175471|Q6DN14-4|MCTP1 MSMS AL20221201_MKP_PDAC_01 4 603.3267822265625 2 603.324254 1204.63395 NaN NaN NaN NaN NaN NaN NaN 92.667 1 86.491 85.991 86.991 -6.1757 0 0 0 0.81803 1 61287 61287 13.042 0 1 + 42363 22873 28151 28861 49774 49774 0.039822466120767785 NLEMLDGNISS 11 Unmodified _NLEMLDGNISS_ 0 0 0 REV__PPP6R3-LRP5|1|fusion REV__PPP6R3-LRP5|1|fusion MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.3692626953125 2 596.779353 1191.54415 0.19091 0.00011393 2.9389 0.0017539 3.1299 0.0018678 597.2824545339441 101.85 0.070045 95.676 95.63 95.7 -6.1757 8 3 3 0 0 0 0.27931 1 68347 68347 19.362 3.5148 1 10629000 + 42364 30078 28152 28862 49775 49775 -0.043957510587688375 NLEQTDKNI 9 Unmodified _NLEQTDKNI_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|152|3|sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|152|3|sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.2145385742188 3 358.852377 1073.5353 1.6672 0.00059829 -1.8716 -0.00067161 -0.20433 -7.3325E-05 358.85149760779734 42.01 0.34921 37.326 37.143 37.492 -4.6846 34 21 2 0 0 0 0.19613 1 25209 25209 8.1555 0 1 19829000 + 42365 29426 28153 28863 49776 49776 0.0014764336706321046 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.8086547851562 2 538.808574 1075.60259 0.25363 0.00013666 -0.12472 -6.7202E-05 0.12891 6.9455E-05 538.8086023645182 74.872 0.27445 74.918 74.793 75.068 0.045967 30 12 3 0 0 0 0.024189 1 41287 41287 59.368 24.967 1 6548500 42366 7130 28154 28864 49777 49777 0.06781718368665679 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8082885742188 2 538.808574 1075.60259 1.031 0.0005555 -2.0669 -0.0011137 -1.0359 -0.00055816 538.8073248844701 96.105 0.2742 89.929 89.848 90.122 -6.1757 32 16 3 0 0 0 0.01085 1 63694 63694 78.06 34.288 1 27165000 42367 7130 28154 28864 49778 49778 0.06781718368665679 NLFDRVVTL 9 Unmodified _NLFDRVVTL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123 ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 538.808574 1075.60259 0.25363 0.00013666 -0.12472 -6.7202E-05 0.12891 6.9455E-05 538.8086023645182 74.872 0.27445 74.918 74.793 75.068 0.045967 -0.01542 0.00038907 NaN 59.368 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6548500 42368 7130 28154 28864 0.06781718368665679 NLFKKRFTV 9 Unmodified _NLFKKRFTV_ 0 0 0 ENST00000488374.5_1_3:167517863-167543108:+|nuORF ENST00000488374.5_1_3:167517863-167543108:+|nuORF ENST00000488374.5_1_3:167517863-167543108:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5846557617188 3 384.901114 1151.68151 1.3414 0.00051629 2.6511 0.0010204 3.9925 0.0015367 384.90224862352255 83.348 0.28856 77.172 76.924 77.212 -6.1757 22 14 2 0 0 0 0.21021 1 54757 54757 4.5289 0 1 6785700 42369 14218 28155 28865 49779 49779 0.11173990393604072 NLFKKRFTV 9 Unmodified _NLFKKRFTV_ 0 0 0 ENST00000488374.5_1_3:167517863-167543108:+|nuORF ENST00000488374.5_1_3:167517863-167543108:+|nuORF ENST00000488374.5_1_3:167517863-167543108:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5843505859375 3 384.901114 1151.68151 1.2701 0.00048888 3.6579 0.0014079 4.928 0.0018968 384.90283931619257 83.078 0.046715 76.902 76.863 76.91 -6.1757 4 2 2 0 0 0 0.20572 1 54606 54606 10.151 5.2536 1 2967700 42370 14218 28155 28865 49780 49780 0.11173990393604072 NLFLFFFF 8 Unmodified _NLFLFFFF_ 0 0 0 ENST00000533538.5_1_17:45664518-45669919:+|nuORF;ENST00000525021.1_1_17:45664518-45669341:+|nuORF ENST00000533538.5_1_17:45664518-45669919:+|nuORF ENST00000533538.5_1_17:45664518-45669919:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2928466796875 2 547.789121 1093.56369 0.17397 9.5301E-05 1.4162 0.0007758 1.5902 0.0008711 548.2924217021729 51.818 0.53284 51.759 51.494 52.027 -0.058918 41 25 2 0 0 0 0.77907 1 27985 27985 10.183 2.2732 1 15622000 42371 14939 28156 28866 49781 49781 0.02065037804959502 NLFNKYPAL 9 Unmodified _NLFNKYPAL_ 0 0 0 nc|ENSG00000102024|P13797-2|PLS3;ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3 nc|ENSG00000102024|P13797-2|PLS3 nc|ENSG00000102024|P13797-2|PLS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.298095703125 2 540.297842 1078.58113 0.30326 0.00016385 -0.083867 -4.5313E-05 0.21939 0.00011854 540.2973925158674 61.048 0.25969 61.004 60.866 61.125 -0.04351 16 12 2 0 0 0 0.038285 1 33319 33319 50.855 20.218 1 3120700 42372 2010 28157 28867 49782 49782 0.04498333339938654 NLFWRQCF 8 Unmodified _NLFWRQCF_ 0 0 0 REV__ENST00000311806.7_1_3:38295131-38295401:+|nuORF REV__ENST00000311806.7_1_3:38295131-38295401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7720336914062 2 557.268561 1112.52257 0.645 0.00035944 0.33201 0.00018502 0.97702 0.00054446 557.26867141081 90.339 0.38111 89.837 89.586 89.967 -0.50172 33 17 2 0 0 0 0.80676 1 49304 49304 2.5775 0.92486 1 1058700 + 42373 25427 28158 28868 49783 49783 -0.02919046506167433 NLFWRVEI 8 Unmodified _NLFWRVEI_ 0 0 0 REV__ENSG00000196126|ENST00000360004|HLA-DRB1 REV__ENSG00000196126|ENST00000360004|HLA-DRB1 MSMS AL20221201_MKP_PDAC_01 4 359.5350646972656 3 359.534431 1075.58147 NaN NaN NaN NaN NaN NaN NaN 19.446 1 16.79 16.29 17.29 -2.6564 0 0 0 0.85975 1 10299 10299 20.454 8.213 1 + 42374 23792 28159 28869 49784 49784 0.046697530598066805 NLFYSSLIASI 11 Unmodified _NLFYSSLIASI_ 0 0 0 REV__ENSG00000163293|ENST00000295461|NIPAL1 REV__ENSG00000163293|ENST00000295461|NIPAL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.8118286132812 2 614.334621 1226.65469 NaN NaN NaN NaN NaN NaN NaN 93.832 1 93.411 92.911 93.911 -0.42044 0 0 0 0.93969 1 51269 51269 2.7352 0 1 + 42375 21744 28160 28870 49785 49785 0.050428369917881355 NLFYSSLIASI 11 Unmodified _NLFYSSLIASI_ 0 0 0 REV__ENSG00000163293|ENST00000295461|NIPAL1 REV__ENSG00000163293|ENST00000295461|NIPAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.3362426757812 2 614.334621 1226.65469 0.89954 0.00055262 -0.052765 -3.2416E-05 0.84678 0.0005202 614.3347777601019 99.993 0.158 93.817 93.74 93.898 -6.1757 15 10 2 0 0 0 0.073778 1 66788 66788 45.74 10.808 1 19536000 + 42376 21744 28160 28870 49786 49786 0.050428369917881355 NLGELQYERLQ 11 Unmodified _NLGELQYERLQ_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MSMS AL20221201_MKP_PDAC_01 4 454.9042053222656 3 454.905253 1361.69393 NaN NaN NaN NaN NaN NaN NaN 73.936 1 67.76 67.26 68.26 -6.1757 0 0 0 0.91362 1 48339 48339 6.6235 0.84002 1 + 42377 22971 28161 28871 49787 49787 0.027549372753355783 NLGFNVYF 8 Unmodified _NLGFNVYF_ 0 0 0 ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2420349121094 2 487.242535 972.470518 0.79793 0.00038879 -2.1647 -0.0010547 -1.3667 -0.00066593 487.24103276783575 56.81 0.31542 56.741 56.619 56.935 -0.068737 23 15 2 0 0 0 0.80143 1 30930 30930 5.7604 0.52976 1 2033800 42378 15058 28162 28872 49788 49788 -0.016818866482935846 NLGLSSIPKNF 11 Unmodified _NLGLSSIPKNF_ 0 0 0 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.2019958496094 3 397.224034 1188.65027 0.51958 0.00020639 -3.7378 -0.0014848 -3.2182 -0.0012784 397.2201798855592 26.423 0.35551 23.472 23.3 23.656 -2.9511 33 18 3 0 0 0 0.30356 1 14605 14605 5.0475 1.1712 1 10124000 42379 9453 28163 28873 49789 49789 0.06349372568843137 NLGNILLNVLI 11 Unmodified _NLGNILLNVLI_ 0 0 0 nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50 nc|ENSG00000093000|Q9UKX7-2|NUP50 nc|ENSG00000093000|Q9UKX7-2|NUP50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2500305175781 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 33.439 1 33.468 32.968 33.968 0.028934 0 0 0 0.93954 1 17592 17592 2.8433 0.75728 1 42380 1627 28164 28874 49790 49790 0.14403109016711824 NLGRRRSKQ 9 Unmodified _NLGRRRSKQ_ 0 0 0 nc|ENSG00000204209|Q9UER7-2|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.83251953125 2 557.831237 1113.64792 NaN NaN NaN NaN NaN NaN NaN 57.31 1 57.244 56.744 57.744 -0.066036 0 0 0 0.79771 1 31193 31193 6.2058 0.44535 1 42381 16504 28165 28875 49791 49791 0.09564381674408651 NLGTIRFY 8 Unmodified _NLGTIRFY_ 0 0 0 ENST00000521957.1_1_8:102792193-102798275:-|nuORF ENST00000521957.1_1_8:102792193-102798275:-|nuORF ENST00000521957.1_1_8:102792193-102798275:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2472839355469 2 492.269084 982.523616 0.23988 0.00011808 0.17253 8.493E-05 0.4124 0.00020301 492.2691968474567 39.442 0.18675 39.442 39.321 39.508 0 21 8 3 0 0 0 8.7369 1 21092 21092 8.5933 0 1 4398300 42382 14749 28166 28876 49792 49792 0.03165491134370768 NLGVFPLLNER 11 Unmodified _NLGVFPLLNER_ 0 0 0 REV__ENSG00000162607|ENST00000339950|USP1 REV__ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.357177734375 2 636.358962 1270.70337 3.3192 0.0021122 -3.2289 -0.0020547 0.090318 5.7474E-05 636.3569785855404 97.83 0.4211 97.811 97.651 98.072 -0.018188 34 14 3 0 0 0 0.62338 1 54357 54357 10.151 1.995 1 3956700 + 42383 21663 28167 28877 49793 49793 0.07884750351513503 NLHMLRGQV 9 Unmodified _NLHMLRGQV_ 0 0 0 nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2 nc|ENSG00000144712|O75155-2|CAND2 nc|ENSG00000144712|O75155-2|CAND2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.2327880859375 3 356.530804 1066.57058 0.83465 0.00029758 -0.031541 -1.1245E-05 0.80311 0.00028633 356.5306135231676 26.104 0.26094 23.153 23.02 23.281 -2.9511 27 15 2 0 0 0 0.21473 1 14407 14407 2.4985 0.59211 1 5382200 42384 5635 28168 28878 49794 49794 0.03996027413859338 NLIFINVLR 9 Unmodified _NLIFINVLR_ 0 0 0 ENST00000477543.1_1_15:59971734-59981480:-|nuORF ENST00000477543.1_1_15:59971734-59981480:-|nuORF ENST00000477543.1_1_15:59971734-59981480:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8976440429688 3 367.897481 1100.67061 -0.053779 -1.9785E-05 -0.10751 -3.9554E-05 -0.16129 -5.934E-05 367.8973422385414 54.246 0.19989 54.179 54.062 54.262 -0.066936 17 9 2 0 0 0 0.58145 1 29444 29444 2.4985 0 1 1896400 42385 13996 28169 28879 49795 49795 0.12430588019310562 NLILKILVS 9 Unmodified _NLILKILVS_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3280334472656 2 506.841885 1011.66922 -0.45253 -0.00022936 4.2777 0.0021681 3.8252 0.0019388 506.84376386532654 102.69 0.087563 102.65 102.6 102.69 -0.047928 4 2 2 0 0 0 0.21893 1 57031 57031 0 0 1 1424500 42386 502 28170 28880 49796 49796 0.16384953930571555 NLINEPLVIF 10 Unmodified _NLINEPLVIF_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MSMS AL20221201_MKP_PDAC_01 4 586.291259765625 2 586.339707 1170.66486 NaN NaN NaN NaN NaN NaN NaN 102.23 1 96.056 95.556 96.556 -6.1757 0 0 0 0.96981 1 68610 68610 3.9444 0 1 42387 9670 28171 28881 49797 49797 0.08635444716992424 NLIQGTTAV 9 Unmodified _NLIQGTTAV_ 0 0 0 REV__nc|ENSG00000186642|O00408-5|PDE2A REV__nc|ENSG00000186642|O00408-5|PDE2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7602844238281 2 458.758549 915.502546 -0.056017 -2.5698E-05 2.3101 0.0010598 2.2541 0.0010341 458.75962148225744 31.818 0.21789 31.689 31.575 31.793 -0.12915 15 8 2 0 0 0 0.43463 1 16551 16551 10.824 1.4408 1 3080800 + 42388 23586 28172 28882 49798 49798 0.04141481034844219 NLKEEIAVL 9 Unmodified _NLKEEIAVL_ 0 0 0 nc|ENSG00000163071|Q8TC71-2|SPATA18;ENSG00000163071|ENST00000295213|SPATA18 nc|ENSG00000163071|Q8TC71-2|SPATA18 nc|ENSG00000163071|Q8TC71-2|SPATA18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.803466796875 2 514.802957 1027.59136 1.045 0.00053796 0.13687 7.046E-05 1.1818 0.00060842 514.8029642277947 60.977 0.43043 54.829 54.667 55.097 -6.1478 54 22 3 0 0 0 0.0094097 1 39358 39358 82.529 2.933 1 90753000 42389 6947 28173 28883 49799 49799 0.0786689627452688 NLKEQQKLY 9 Unmodified _NLKEQQKLY_ 0 0 0 REV__nc|ENSG00000136603|P12757-3|SKIL REV__nc|ENSG00000136603|P12757-3|SKIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.55224609375 3 388.552151 1162.63462 0.4937 0.00019183 0.5345 0.00020768 1.0282 0.00039951 388.55222493717326 24.892 0.24844 22.009 21.835 22.083 -2.8831 26 15 2 0 0 0 0.44883 1 13520 13520 10.151 2.2052 1 7965600 + 42390 20170 28174 28884 49800 49800 0.059810860518155096 NLKIDVPTL 9 Unmodified _NLKIDVPTL_ 0 0 0 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 ENSG00000125780|ENST00000381458|TGM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2563781738281 2 506.8055 1011.59645 -0.11556 -5.8566E-05 0.46907 0.00023773 0.35351 0.00017916 506.80573587173376 28.983 0.21884 28.983 28.883 29.102 0 16 10 2 0 0 0 0.21052 1 14991 14991 6.7232 0 1 808600 42391 3882 28175 28885 49801 49801 0.0911120013714708 NLKIFKLHQ 9 Unmodified _NLKIFKLHQ_ 0 0 0 REV__ENSG00000131446|ENST00000307826|MGAT1 REV__ENSG00000131446|ENST00000307826|MGAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8475952148438 2 570.848033 1139.68151 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.48 103.98 104.98 -0.048737 0 0 0 0.84737 1 58040 58040 1.8442 0 1 + 42392 19791 28176 28886 49802 49802 0.11725990393620123 NLKIIHRRL 9 Unmodified _NLKIIHRRL_ 0 0 0 REV__ENST00000400795.3_1_1:15518372-15518612:-|nuORF REV__ENST00000400795.3_1_1:15518372-15518612:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8783569335938 2 581.880199 1161.74584 -0.10477 -6.0964E-05 -1.5706 -0.00091392 -1.6754 -0.00097489 581.8789837279073 102.99 0.26412 102.94 102.81 103.07 -0.047928 18 10 2 0 0 0 0.59218 1 57193 57193 1.8442 0 1 1085800 + 42393 26600 28177 28887 49803 49803 0.17144190270414583 NLKIIHRRL 9 Unmodified _NLKIIHRRL_ 0 0 0 REV__ENST00000400795.3_1_1:15518372-15518612:-|nuORF REV__ENST00000400795.3_1_1:15518372-15518612:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 581.880199 1161.74584 -0.10477 -6.0964E-05 -1.5706 -0.00091392 -1.6754 -0.00097489 581.8789837279073 102.99 0.26412 102.94 102.81 103.07 -0.047928 0 0 NaN 1.8442 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1085800 + 42394 26600 28177 28887 0.17144190270414583 NLKQRDHFF 9 Unmodified _NLKQRDHFF_ 0 0 0 ENST00000604187.1_1_14:50517346-50518003:+|nuORF ENST00000604187.1_1_14:50517346-50518003:+|nuORF ENST00000604187.1_1_14:50517346-50518003:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2118530273438 3 402.21224 1203.61489 NaN NaN NaN NaN NaN NaN NaN 92.236 1 86.06 85.56 86.56 -6.1757 0 0 0 0.81228 1 60989 60989 5.7319 0.43497 1 42395 15838 28178 28888 49804 49804 0.021227548316801403 NLKVKRPVQ 9 Unmodified _NLKVKRPVQ_ 0 0 0 ENST00000457473.1_1_9:75270895-75271066:-|nuORF ENST00000457473.1_1_9:75270895-75271066:-|nuORF ENST00000457473.1_1_9:75270895-75271066:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.345947265625 2 541.345658 1080.67676 0.19789 0.00010713 1.1772 0.00063725 1.375 0.00074437 541.3466062770551 24.674 0.21743 24.699 24.586 24.804 0.024429 11 8 2 0 0 0 0.4887 1 12744 12744 7.9102 0.62092 1 3718200 42396 13614 28179 28889 49805 49805 0.139651062508392 NLLDLLTEV 9 Unmodified _NLLDLLTEV_ 0 0 0 nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;ENST00000556704.1_1_15:91486092-91490047:+|nuORF nc|ENSG00000140553|Q9H3U1-2|UNC45A nc|ENSG00000140553|Q9H3U1-2|UNC45A MSMS AL20221201_MKP_PDAC_01 4 515.2954711914062 2 515.294965 1028.57538 NaN NaN NaN NaN NaN NaN NaN 102.03 1 95.851 95.351 96.351 -6.1757 0 0 0 0.70001 1 68483 68483 9.3831 0 1 42397 5252 28180 28890 49806 49806 0.06223190037621862 NLLEEVFHL 9 Unmodified _NLLEEVFHL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.301513671875 2 557.300581 1112.58661 0.54023 0.00030107 1.0407 0.00057996 1.5809 0.00088103 557.3010227376311 99.609 0.1471 99.452 99.407 99.554 -0.1575 7 4 3 0 0 0 0.038285 1 54398 54398 50.855 16.753 1 2810800 42398 7270 28181 28891 49807 49807 0.03482012131780721 NLLEEVFHL 9 Unmodified _NLLEEVFHL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3017578125 2 557.300581 1112.58661 3.8275 0.0021331 -1.0138 -0.00056501 2.8137 0.0015681 557.3001863362604 99.502 0.12421 99.466 99.405 99.529 -0.036301 11 4 3 0 0 0 0.023164 1 55271 55271 60.39 18.295 1 3568300 42399 7270 28181 28891 49808 49808 0.03482012131780721 NLLEKENYL 9 Unmodified _NLLEKENYL_ 0 0 0 ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2 ENSG00000057294|ENST00000340811|PKP2 ENSG00000057294|ENST00000340811|PKP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3034057617188 2 568.303321 1134.59209 0.63918 0.00036325 0.13348 7.5856E-05 0.77266 0.00043911 568.3030583674392 87.341 0.29206 86.837 86.631 86.923 -0.50423 16 11 2 0 0 0 0.49272 1 47777 47777 7.9102 0 1 490920 42400 791 28182 28892 49809 49809 0.030176909235706262 NLLEQFILL 9 Unmodified _NLLEQFILL_ 0 0 0 ENST00000466901.5_1_2:232653280-232656595:+|nuORF;ENST00000492423.5_1_2:232651186-232653667:+|nuORF;COPS7B|p.H243Qfs*3|1|0.12|ENSG00000144524|chr2:231807577-231807578|-/A|frameshift_variant;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B ENST00000466901.5_1_2:232653280-232656595:+|nuORF ENST00000466901.5_1_2:232653280-232656595:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8297729492188 2 551.828975 1101.6434 0.93254 0.0005146 0.51851 0.00028613 1.4511 0.00080074 551.8292467490752 102.25 0.087059 96.078 96.027 96.114 -6.1757 9 3 3 0 0 0 0.082934 1 68630 68630 47.749 7.7914 1 9775800 42401 216 28183 28893 49810 49810 0.09664059688270754 NLLETKLQL 9 Unmodified _NLLETKLQL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1;nc|ENSG00000166889|Q86TB9-3|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.3241577148438 2 536.324057 1070.63356 0.10076 5.4042E-05 0.9574 0.00051348 1.0582 0.00056752 536.3243663657083 66.531 0.23035 66.048 65.88 66.11 -0.48323 17 10 2 0 0 0 0.20428 1 36309 36309 22.736 0 1 1044400 42402 7546 28184 28894 49811 49811 0.10106871682910423 NLLIQVEEV 9 Unmodified _NLLIQVEEV_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8010864257812 2 528.800414 1055.58628 0.39656 0.0002097 0.58138 0.00030744 0.97794 0.00051714 528.8005770675816 76.576 0.31698 76.576 76.468 76.785 0 19 12 2 0 0 0 0.41742 1 42583 42583 11.64 1.5664 1 508790 42403 4768 28185 28895 49812 49812 0.06070592411901998 NLLKLIAEV 9 Unmodified _NLLKLIAEV_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF ENSG00000152253|ENST00000282074|SPC25 ENSG00000152253|ENST00000282074|SPC25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8236083984375 2 506.823692 1011.63283 NaN NaN NaN NaN NaN NaN NaN 85.418 1 85.48 84.98 85.98 0.061638 0 0 0 0.0052483 1 47285 47285 103.35 41.996 1 42404 6174 28186 28896 49813 49813 0.12748077033859317 NLLKLIAEV 9 Unmodified _NLLKLIAEV_ 0 0 0 ENSG00000152253|ENST00000282074|SPC25;ENST00000479309.6_1_2:169690730-169745796:-|nuORF ENSG00000152253|ENST00000282074|SPC25 ENSG00000152253|ENST00000282074|SPC25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8249206542969 2 506.823692 1011.63283 0.18862 9.5599E-05 0.08247 4.1798E-05 0.2711 0.0001374 506.82386434419453 99.842 0.12684 93.667 93.588 93.715 -6.1757 20 9 3 0 0 0 0.023481 1 66601 66601 60.074 27.768 1 66937000 42405 6174 28186 28896 49814 49814 0.12748077033859317 NLLNDLASL 9 Unmodified _NLLNDLASL_ 0 0 0 REV__ENST00000527738.1_1_11:118918433-118918792:-|nuORF REV__ENST00000527738.1_1_11:118918433-118918792:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.7702941894531 2 486.771657 971.528761 NaN NaN NaN NaN NaN NaN NaN 53.651 1 47.847 47.347 48.347 -5.8042 0 0 0 0.39043 1 33938 33938 20.454 0 1 + 42406 20996 28187 28897 49815 49815 0.04185750206318062 NLLNRLLNL 9 Unmodified _NLLNRLLNL_ 0 0 0 ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5606384277344 3 361.560869 1081.66078 -0.23344 -8.4402E-05 -0.22593 -8.1686E-05 -0.45936 -0.00016609 361.5608812661085 32.438 0.7854 32.468 31.887 32.672 0.029743 46 33 2 0 0 0 0.32871 1 16926 16926 10.8 3.1906 1 1474100 42407 1089 28188 28898 49816 49816 0.1232140001393418 NLLNRLLNL 9 Unmodified _NLLNRLLNL_ 0 0 0 ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE ENSG00000072657|ENST00000261180|TRHDE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5600891113281 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 31.316 1 31.346 30.846 31.846 0.030106 0 0 0 0.6306 1 16401 16401 7.609 2.7119 1 42408 1089 28188 28898 49817 49817 0.1232140001393418 NLLPKLHIV 9 Unmodified _NLLPKLHIV_ 0 0 0 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4 ENSG00000213719|ENST00000375784|CLIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.8395385742188 2 523.839677 1045.6648 0.24411 0.00012788 -0.0053407 -2.7977E-06 0.23877 0.00012508 523.8397833345687 60.1 0.34611 60.047 59.836 60.182 -0.053059 38 18 3 0 0 0 0.016184 1 32742 32742 67.344 40.46 1 17045000 42409 10454;7879 28189 28899 49818 49818 0.14379489507655308 NLLPKLHVV 9 Unmodified _NLLPKLHVV_ 0 0 0 ENST00000484572.1_1_6:45870949-45882153:-|nuORF;nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5;nc|ENSG00000112782|Q9NZA1|CLIC5 ENST00000484572.1_1_6:45870949-45882153:-|nuORF ENST00000484572.1_1_6:45870949-45882153:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8319091796875 2 516.831852 1031.64915 -0.050953 -2.6334E-05 0.83705 0.00043261 0.7861 0.00040628 516.8322547754456 53.997 0.37533 53.931 53.725 54.101 -0.066936 45 18 3 0 0 0 0.016184 2 29256 29256;29362 67.344 26.895 1 12237000 42410 2921 28190 28900 49819;49820 49819 0.1345920299061163 NLLPKLHVV 9 Unmodified _NLLPKLHVV_ 0 0 0 ENST00000484572.1_1_6:45870949-45882153:-|nuORF;nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5;nc|ENSG00000112782|Q9NZA1|CLIC5 ENST00000484572.1_1_6:45870949-45882153:-|nuORF ENST00000484572.1_1_6:45870949-45882153:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.83251953125 2 516.831852 1031.64915 1.1874 0.0006137 -0.17577 -9.0844E-05 1.0116 0.00052285 516.8318052154808 86.382 0.60472 80.206 79.829 80.434 -6.1757 63 32 3 0 0 0 0.016184 1 56877 56877 67.344 35.227 1 15546000 42411 2921 28190 28900 49821 49821 0.1345920299061163 NLLQGFYQF 9 Unmodified _NLLQGFYQF_ 0 0 0 ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1 ENST00000480273.5_1_20:62319266-62327135:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2872924804688 2 565.287474 1128.5604 1.3276 0.00075045 -2.2127 -0.0012508 -0.88516 -0.00050037 565.2875468446078 66.233 0.43984 66.242 66.08 66.519 0.0095596 52 21 3 0 0 0 0.39863 1 36389 36389 12.532 2.4576 1 5840200 42412 10817 28191 28901 49822 49822 0.001257429602674165 NLLQPMVQF 9 Unmodified _NLLQPMVQF_ 0 0 0 REV__ENST00000437852.2_1_9:116612983-116613133:-|nuORF REV__ENST00000437852.2_1_9:116612983-116613133:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7920532226562 2 545.291702 1088.56885 0.54641 0.00029795 1.6793 0.00091574 2.2258 0.0012137 545.2931689758725 66.316 0.84024 60.14 59.841 60.681 -6.1757 116 47 3 0 0 0 0.2001 1 43406 43406 23.148 2.6948 1 124100000 + 42413 17503 28192 28902 49823 49823 0.0281097360525564 NLLQSPEPSY 10 Unmodified _NLLQSPEPSY_ 0 0 0 nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000197283|Q96PV0-3|SYNGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2885131835938 2 574.285128 1146.5557 NaN NaN NaN NaN NaN NaN NaN 59.102 1 58.611 58.111 59.111 -0.49079 0 0 0 0.85122 1 32149 32149 10.074 0.72649 1 42414 9937 28193 28903 49824 49824 -0.01171185973134925 NLLQVLEKV 9 Unmodified _NLLQVLEKV_ 0 0 0 nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF nc|ENSG00000167767|Q6KB66-2|KRT80 nc|ENSG00000167767|Q6KB66-2|KRT80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.3265991210938 2 528.326599 1054.63865 0.40283 0.00021283 -2.1075 -0.0011135 -1.7047 -0.00090065 528.3258387997597 86.558 0.25845 86.055 85.883 86.141 -0.50318 12 10 2 0 0 0 0.38785 1 47355 47355 13.042 0 1 379530 + 42415 183 28194 28904 49825 49825 0.11351175545519254 NLLRFWQQ 8 Unmodified _NLLRFWQQ_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.800537109375 2 552.801083 1103.58761 NaN NaN NaN NaN NaN NaN NaN 19.546 1 19.554 19.054 20.054 0.0078487 0 0 0 0.97444 1 9946 9946 0.69038 0 1 42416 1899 28195 28905 49826 49826 0.03996271291316589 NLLRRHLAHR 10 Unmodified _NLLRRHLAHR_ 0 0 0 REV__ENSG00000165684|ENST00000684778|SNAPC4 REV__ENSG00000165684|ENST00000684778|SNAPC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.2631225585938 3 429.261928 1284.76395 NaN NaN NaN NaN NaN NaN NaN 104.58 1 104.58 104.08 105.08 0 0 0 0 0.99248 1 57551 57551 0.62683 0.12087 1 + 42417 22037 28196 28906 49827 49827 0.1329632524509634 NLLTTLTT 8 Unmodified _NLLTTLTT_ 0 0 0 REV__ENSG00000168830|ENST00000305344|HTR1E REV__ENSG00000168830|ENST00000305344|HTR1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7563171386719 2 438.755475 875.496398 -0.38654 -0.0001696 2.0487 0.00089888 1.6622 0.00072929 438.7563269492184 35.211 0.19279 34.989 34.895 35.087 -0.2224 12 8 2 0 0 0 0.67481 1 18437 18437 19.439 1.304 1 2757000 + 42418 22350 28197 28907 49828 49828 0.05366962803316255 NLLVETSAV 9 Unmodified _NLLVETSAV_ 0 0 0 ENST00000560634.1_1_15:84858634-84860056:+|nuORF;ENST00000558229.1_15:82983798-82985220:-|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2667236328125 2 473.266207 944.517862 NaN NaN NaN NaN NaN NaN NaN 72.819 1 72.819 72.319 73.319 0 0 0 0 0.7243 1 40545 40545 8.5933 0 1 42419 15312 28198 28908 49829 49829 0.04338347832049294 NLLYAGAIHF 10 Unmodified _NLLYAGAIHF_ 0 0 0 REV__nc|ENSG00000067167|Q15629-2|TRAM1 REV__nc|ENSG00000067167|Q15629-2|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8070678710938 2 559.803291 1117.59203 1.1121 0.00062258 -0.63164 -0.00035359 0.48051 0.00026899 559.8029513883454 42.413 0.7014 37.728 37.44 38.142 -4.6846 112 45 3 0 0 0 0.2829 1 25498 25498 28.487 6.7402 1 403460000 + 42420 17415 28199 28909 49830 49830 0.03793735714225477 NLMEMVAQL 9 Unmodified _NLMEMVAQL_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7621459960938 2 524.76192 1047.50929 1.2144 0.00063727 2.1238 0.0011145 3.3382 0.0017517 524.76172500924 100.38 0.21201 94.2 94.058 94.27 -6.1757 18 13 2 0 0 0 0.009483 1 67115 67115 81.89 51.254 1 17579000 42421 8091 28200 28910 49831 49831 -0.012566654004331212 NLMEQPIKV 9 Oxidation (M) _NLM(Oxidation (M))EQPIKV_ NLM(1)EQPIKV NLM(54)EQPIKV 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2953491210938 2 544.294442 1086.57433 0.21379 0.00011637 1.6907 0.00092022 1.9045 0.0010366 544.2952108271697 39.746 0.27662 39.746 39.616 39.892 0 37 13 4 0 0 0 0.032796 1 21326 21326 53.833 15.657 1 15172000 42422 8363 28201 28911 49832 49832 1414 0.03450652397077647 NLNDRLAS 8 Unmodified _NLNDRLAS_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171446|ENST00000301656|KRT27;CON__Q7Z3Y8;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9;ENSG00000204897|ENST00000312150|KRT25;CON__Q7Z3Z0;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;CON__P02535-1;CON__Q148H6;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P35900;CON__P19001;CON__A2A4G1;CON__P02535-1;CON__Q148H6;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7380981445312 2 451.738148 901.461744 -0.17602 -7.9514E-05 -0.52492 -0.00023712 -0.70093 -0.00031664 451.73790615828796 22.736 0.33019 22.759 22.581 22.911 0.022896 39 13 4 0 0 0 0.17596 2 11513 11513;11614 79.596 7.674 1 19002000 + 42423 169;167;176;158;173;135;157;210;184 28202 28912 49833;49834 49833 0.007071397152344616 NLNHVPFAI 9 Unmodified _NLNHVPFAI_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2838745117188 2 512.782359 1023.55016 0.74585 0.00038246 -1.2751 -0.00065385 -0.52925 -0.00027139 512.7816666826261 80.688 0.44156 80.195 79.981 80.422 -0.49247 51 18 4 0 0 0 0.54444 1 44097 44097 4.756 1.8668 1 4472300 42424 1378 28203 28913 49835 49835 0.03933180025705951 NLNPLTPMAV 10 Unmodified _NLNPLTPMAV_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2363891601562 2 535.289159 1068.56377 1.1127 0.0005956 -0.65075 -0.00034834 0.46192 0.00024726 535.2881864054826 89.317 0.87335 83.142 82.901 83.774 -6.1757 76 48 3 0 0 0 0.22667 1 58849 58849 10.824 0 1 28857000 42425 943 28204 28914 49836 49836 0.03222669742604012 NLNRLAIELME 11 Unmodified _NLNRLAIELME_ 0 0 0 REV__ENSG00000112742|ENST00000369798|TTK REV__ENSG00000112742|ENST00000369798|TTK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.3565063476562 2 658.355562 1314.69657 NaN NaN NaN NaN NaN NaN NaN 92.615 1 92.615 92.115 93.115 0 0 0 0 0.94184 1 51212 51212 1.1933 0.12188 1 + 42426 18834 28205 28915 49837 49837 0.051810694086270814 NLNSAYKLL 9 Unmodified _NLNSAYKLL_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2970581054688 2 518.295299 1034.57605 -0.86683 -0.00044927 0.72184 0.00037412 -0.14499 -7.5147E-05 518.2957491089145 32.272 0.26762 32.272 32.146 32.414 0 43 13 4 0 0 0 0.039985 1 16813 16813 49.933 9.9757 1 57009000 42427 6086 28206 28916 49838 49838 0.060140294773418645 NLNSAYKLL 9 Unmodified _NLNSAYKLL_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.294921875 2 518.295299 1034.57605 NaN NaN NaN NaN NaN NaN NaN 32.416 1 32.416 31.916 32.916 0 0 0 0 0.50124 1 16933 16933 15.847 4.2069 1 42428 6086 28206 28916 49839 49839 0.060140294773418645 NLPEAASY 8 Unmodified _NLPEAASY_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.1985778808594 2 432.708525 863.402498 -0.45554 -0.00019712 -1.1035 -0.00047751 -1.5591 -0.00067462 432.70814545512724 28.765 0.24127 28.765 28.662 28.903 0 18 11 2 0 0 0 8.7369 1 14878 14878 9.3474 0 1 2267200 42429 983 28207 28917 49840 49840 -0.03466756298951168 NLPENLQVPM 10 Unmodified _NLPENLQVPM_ 0 0 0 REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.3203125 2 577.797349 1153.58014 0.90531 0.00052309 -1.188 -0.00068643 -0.2827 -0.00016334 578.2989091629369 39.412 0.15204 34.961 34.876 35.028 -4.4509 11 8 2 0 0 0 0.23162 1 23396 23396 12.241 4.3305 1 2893500 + 42430 16979 28208 28918 49841 49841 0.009497509087395883 NLPIFLPRV 9 Unmodified _NLPIFLPRV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3334350585938 2 534.831852 1067.64915 -0.15514 -8.2974E-05 0.078028 4.1732E-05 -0.077112 -4.1242E-05 534.8320832200607 84.471 0.30547 84.534 84.33 84.636 0.063171 18 13 2 0 0 0 0.047196 1 46701 46701 46.021 17.534 1 22464000 42431 3148 28209 28919 49842 49842 0.11803202990608952 NLPIFLPRV 9 Unmodified _NLPIFLPRV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8328857421875 2 534.831852 1067.64915 NaN NaN NaN NaN NaN NaN NaN 84.641 1 84.704 84.204 85.204 0.063171 0 0 0 0.29524 1 46841 46841 25.399 8.457 1 42432 3148 28209 28919 49843 49843 0.11803202990608952 NLPIFLPRV 9 Unmodified _NLPIFLPRV_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8320922851562 2 534.831852 1067.64915 1.4812 0.00079219 -0.85805 -0.00045891 0.62314 0.00033328 534.831561137458 98.235 0.19535 92.06 91.952 92.148 -6.1757 40 12 4 0 0 0 0.047196 1 65109 65109 46.021 19.137 1 258210000 42433 3148 28209 28919 49844 49844 0.11803202990608952 NLPKKHPLF 9 Unmodified _NLPKKHPLF_ 0 0 0 ENST00000569782.2_1_16:31520289-31520549:+|nuORF ENST00000569782.2_1_16:31520289-31520549:+|nuORF ENST00000569782.2_1_16:31520289-31520549:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.781982421875 2 547.329476 1092.6444 0.32715 0.00017906 1.7307 0.00094725 2.0578 0.0011263 547.3307340625388 67.229 0.44435 66.747 66.675 67.119 -0.48218 32 19 3 0 0 0 0.20528 1 36728 36728 8.5933 3.3626 1 1613000 42434 15464 28210 28920 49845 49845 0.10178318847852097 NLPKLFAHF 9 Unmodified _NLPKLFAHF_ 0 0 0 nc|ENSG00000132405|Q9P2M4-2|TBC1D14;ENSG00000132405|ENST00000409757|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8744201660156 3 362.874677 1085.6022 1.1433 0.00041486 -0.027539 -9.9932E-06 1.1157 0.00040486 362.8747542402428 92.831 0.20584 86.655 86.534 86.74 -6.1757 23 13 2 0 0 0 0.12841 1 61382 61382 21.537 15.345 1 19170000 42435 4402 28211 28921 49846 49846 0.06282343439443139 NLPKLFAHF 9 Unmodified _NLPKLFAHF_ 0 0 0 nc|ENSG00000132405|Q9P2M4-2|TBC1D14;ENSG00000132405|ENST00000409757|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 nc|ENSG00000132405|Q9P2M4-2|TBC1D14 MSMS AL20221201_MKP_PDAC_01 4 543.8088989257812 2 543.808377 1085.6022 NaN NaN NaN NaN NaN NaN NaN 92.849 1 86.673 86.173 87.173 -6.1757 0 0 0 0.096036 1 61415 61415 44.407 22.87 1 42436 4402 28211 28921 49847 49847 0.06282343439443139 NLPKLPKLKKL 11 Unmodified _NLPKLPKLKKL_ 0 0 0 nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF nc|ENSG00000136938|Q92688-2|ANP32B nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.4458618164062 2 646.44484 1290.87513 0.92662 0.00059901 -0.066715 -4.3128E-05 0.8599 0.00055588 646.44485600271 87.255 0.3065 81.079 80.876 81.182 -6.1757 28 16 2 0 0 0 0.74203 2 57583 57452;57583 0.30703 0.30703 1 15685000 42437 4886 28212 28922 49848;49849 49849 0.2413252710980487 NLPLKKDAL 9 Unmodified _NLPLKKDAL_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.219482421875 2 506.313492 1010.61243 0.5538 0.0002804 -2.8471 -0.0014415 -2.2933 -0.0011611 506.81103039420003 56.393 0.41201 50.416 50.187 50.599 -5.9769 49 23 3 0 0 0 0.20727 1 35913 35913 7.9102 5.0209 1 25573000 42438 702 28213 28923 49850 49850 0.1075490637402936 NLPLWLHKF 9 Unmodified _NLPLWLHKF_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8944091796875 3 389.89396 1166.66005 0.24609 9.5947E-05 0.683 0.0002663 0.92908 0.00036224 389.89426480890114 67.844 0.32956 67.862 67.687 68.016 0.018036 41 15 4 0 0 0 0.07916 1 37234 37234 28.495 20.886 1 8573600 42439 2708 28214 28924 49851 49851 0.0833860536490647 NLPLWLHKF 9 Unmodified _NLPLWLHKF_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8940124511719 3 389.89396 1166.66005 0.52848 0.00020605 -0.28149 -0.00010975 0.24699 9.6301E-05 389.89421333380284 93.054 0.23756 86.878 86.726 86.964 -6.1757 34 14 4 0 0 0 0.07916 2 61536 61489;61536 28.495 19.749 1 40536000 42440 2708 28214 28924 49852;49853 49853 0.0833860536490647 NLPLWLHKF 9 Unmodified _NLPLWLHKF_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3363037109375 2 584.337301 1166.66005 0.16185 9.4578E-05 1.15 0.00067197 1.3118 0.00076655 584.3375565594283 93.055 0.22367 86.88 86.74 86.964 -6.1757 21 13 2 0 0 0 0.03568 1 61540 61540 52.268 26.869 1 36124000 42441 2708 28214 28924 49854 49854 0.0833860536490647 NLPNLKSLF 9 Unmodified _NLPNLKSLF_ 0 0 0 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 ENSG00000121871|ENST00000475390|SLITRK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3038940429688 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 76.548 1 76.596 76.096 77.096 0.047943 0 0 0 0.51965 1 42238 42238 15.248 3.6082 1 42442 3603 28215 28925 49855 49855 0.07626619856978323 NLPPLPLDP 9 Unmodified _NLPPLPLDP_ 0 0 0 ENSG00000157637|ENST00000374759|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10 ENSG00000157637|ENST00000374759|SLC38A10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2781066894531 2 488.279118 974.543683 NaN NaN NaN NaN NaN NaN NaN 72.417 1 71.941 71.441 72.441 -0.47609 0 0 0 0.26667 1 39631 39631 26.884 1.4843 1 42443 6533 28216 28926 49856 49856 0.055392420743373805 NLPRRSWRPLA 11 Unmodified _NLPRRSWRPLA_ 0 0 0 ENST00000389005.5_1_17:3716188-3716341:-|nuORF ENST00000389005.5_1_17:3716188-3716341:-|nuORF ENST00000389005.5_1_17:3716188-3716341:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.9338073730469 3 455.933588 1364.77894 NaN NaN NaN NaN NaN NaN NaN 17.171 1 17.176 16.676 17.676 0.0050564 0 0 0 0.94287 1 8649 8649 0.45452 0 1 42444 12640 28217 28927 49857 49857 0.11113772322460136 NLPSSLEYL 9 Unmodified _NLPSSLEYL_ 0 0 0 nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 nc|ENSG00000239732|Q9NR96-2|TLR9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2716674804688 2 518.27149 1034.52843 NaN NaN NaN NaN NaN NaN NaN 60.992 1 60.502 60.002 61.002 -0.48932 0 0 0 0.33856 1 33219 33219 23.148 1.4018 1 42445 10664 28218 28928 49858 49858 0.012543304864948368 NLPVKQWYF 9 Unmodified _NLPVKQWYF_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8181762695312 2 597.818941 1193.62333 0.23565 0.00014088 -2.178 -0.001302 -1.9423 -0.0011612 597.8171655918278 69.496 0.18581 69.526 69.46 69.646 0.030914 14 9 2 0 0 0 0.2143 1 38233 38233 21.747 7.8406 1 6054400 42446 1477 28219 28929 49859 49859 0.03426308748316842 NLQAPMYFFI 10 Unmodified _NLQAPMYFFI_ 0 0 0 ENSG00000185231|ENST00000327606|MC2R ENSG00000185231|ENST00000327606|MC2R ENSG00000185231|ENST00000327606|MC2R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8115844726562 2 622.312635 1242.61072 0.92953 0.00057846 0.42377 0.00026372 1.3533 0.00084218 622.3128575109606 58.309 0.53644 58.248 57.858 58.394 -0.060719 46 26 3 0 0 0 0.23227 1 31776 31776 10.824 0.75 1 8416100 42447 9347 28220 28930 49860 49860 -0.0008847070623687614 NLQDQDWKPL 10 Unmodified _NLQDQDWKPL_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.0440063476562 3 419.547177 1255.6197 1.1927 0.00050041 0.96342 0.0004042 2.1562 0.00090462 419.54751100688475 19.036 0.24801 16.414 16.242 16.49 -2.6215 19 15 2 0 0 0 0.23558 1 9995 9995 2.6312 0.37851 1 1669000 42448 2562 28221 28931 49861 49861 0.0021159418379284034 NLQDQDWKPL 10 Unmodified _NLQDQDWKPL_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 419.547177 1255.6197 -0.66009 -0.00027694 4.4942 0.0018855 3.8341 0.0016086 419.5484000118175 16.443 0.02136 16.443 16.432 16.453 0 -0.03466 0.0040235 NaN 2.6312 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 377430 42449 2562 28221 28931 0.0021159418379284034 NLQDQDWKPL 10 Unmodified _NLQDQDWKPL_ 0 0 0 ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA ENSG00000108381|ENST00000263080|ASPA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 419.547177 1255.6197 -0.017011 -7.1369E-06 -0.12675 -5.3177E-05 -0.14376 -6.0314E-05 419.8819066155485 16.571 0.17285 16.577 16.457 16.63 0.0050564 0.098433 -0.0017925 NaN 2.6312 12 8 3 NaN NaN NaN NaN 0 NaN NaN 0 701210 42450 2562 28221 28931 0.0021159418379284034 NLQDQVDYVF 10 Unmodified _NLQDQVDYVF_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.794921875 2 620.79586 1239.57717 0.2593 0.00016097 -0.46841 -0.00029079 -0.20912 -0.00012982 620.795759343852 59.865 0.27476 59.374 59.234 59.509 -0.49079 29 13 3 0 0 0 0.6606 1 32549 32549 7.2892 1.5574 1 5532200 + 42451 23865 28222 28932 49862 49862 -0.033038009444453564 NLQEGEFLL 9 Unmodified _NLQEGEFLL_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7781372070312 2 531.776939 1061.53933 NaN NaN NaN NaN NaN NaN NaN 78.552 1 78.552 78.052 79.052 0 0 0 0 0.67877 1 43651 43651 10.074 3.8681 1 42452 2437 28223 28933 49863 49863 0.011017328607749732 NLQHLTLFLI 10 Unmodified _NLQHLTLFLI_ 0 0 0 REV__ENST00000598875.1_1_19:44169322-44169451:-|nuORF REV__ENST00000598875.1_1_19:44169322-44169451:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3606567382812 2 606.360973 1210.70739 1.2126 0.00073526 -0.20901 -0.00012674 1.0036 0.00060852 606.360848951478 104.44 0.073837 98.265 98.254 98.327 -6.1757 14 9 2 0 0 0 0.71123 1 69954 69954 1.6526 1.1943 1 9212900 + 42453 29236 28224 28934 49864 49864 0.11046839845243994 NLQIDPSIQ 9 Unmodified _NLQIDPSIQ_ 0 0 0 ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF ENSG00000186081|ENST00000252242|KRT5 ENSG00000186081|ENST00000252242|KRT5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7316284179688 2 514.274564 1026.53457 0.22726 0.00011687 -0.090865 -4.673E-05 0.13639 7.0144E-05 514.7760668123684 51.719 0.11045 51.719 51.642 51.753 0 7 4 2 0 0 0 0.10661 1 28564 28564 37.974 7.3375 1 1574000 + 42454 170 28225 28935 49865 49865 0.022368487180074226 NLQIDPSIQ 9 Unmodified _NLQIDPSIQ_ 0 0 0 ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF ENSG00000186081|ENST00000252242|KRT5 ENSG00000186081|ENST00000252242|KRT5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.274564 1026.53457 0.50735 0.00026092 4.9645 0.0025531 5.4719 0.0028141 514.2781515528708 52.295 0.33274 51.862 51.631 51.964 -0.43367 0.071511 0.0047128 NaN 37.974 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1077900 + 42455 170 28225 28935 0.022368487180074226 NLQQLWSNL 9 Unmodified _NLQQLWSNL_ 0 0 0 ENST00000239374.7_1_6:151857525-151859231:+|nuORF ENST00000239374.7_1_6:151857525-151859231:+|nuORF ENST00000239374.7_1_6:151857525-151859231:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.295654296875 2 558.29583 1114.57711 0.60315 0.00033674 -0.26999 -0.00015073 0.33316 0.000186 558.2955777728225 57.122 0.25355 56.637 56.523 56.777 -0.48554 20 11 2 0 0 0 0.25681 1 31032 31032 19.257 5.3509 1 2819400 42456 11101 28226 28936 49866 49866 0.024402438462402642 NLRETFRNL 9 Unmodified _NLRETFRNL_ 0 0 0 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.8197021484375 2 581.820004 1161.62546 -0.37934 -0.00022071 -0.6271 -0.00036486 -1.0064 -0.00058557 581.8194364914764 41.383 0.30298 41.383 41.196 41.499 0 40 14 4 0 0 0 0.10734 1 22259 22259 32.305 6.0373 1 44571000 42457 7175 28227 28937 49867 49867 0.0511073748614308 NLRETFRNL 9 Unmodified _NLRETFRNL_ 0 0 0 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 ENSG00000164305|ENST00000308394|CASP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 581.820004 1161.62546 -0.37934 -0.00022071 -0.6271 -0.00036486 -1.0064 -0.00058557 581.8194364914764 41.383 0.30298 41.383 41.196 41.499 0 0 0 NaN 32.305 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 44571000 42458 7175 28227 28937 0.0511073748614308 NLRKMYKK 8 Unmodified _NLRKMYKK_ 0 0 0 REV__ENST00000466774.5_1_1:59150886-59165724:-|nuORF REV__ENST00000466774.5_1_1:59150886-59165724:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.5495300292969 3 360.883066 1079.62737 NaN NaN NaN NaN NaN NaN NaN 16.455 1 16.456 15.956 16.956 0.0010548 0 0 0 0.97444 1 8116 8116 1.4819 0.41044 1 + 42459 27417 28228 28938 49868 49868 0.09074074970385482 NLRPKKGI 8 Unmodified _NLRPKKGI_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.30029296875 2 463.300719 924.586885 -0.52347 -0.00024252 0.94825 0.00043933 0.42478 0.0001968 463.30108506463336 102.48 0.58227 102.43 102.26 102.84 -0.045853 38 19 3 0 0 0 0.80992 1 56953 56953 0.69038 0 1 2974800 + 42460 21781 28229 28939 49869 49869 0.12157476642289566 NLRPKKGI 8 Unmodified _NLRPKKGI_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 463.300719 924.586885 -0.52347 -0.00024252 0.94825 0.00043933 0.42478 0.0001968 463.30108506463336 102.48 0.58227 102.43 102.26 102.84 -0.045853 0 0 NaN 0.69038 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2974800 + 42461 21781 28229 28939 0.12157476642289566 NLRRQLPQNVL 11 Unmodified _NLRRQLPQNVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000572615.1_1_17:1372344-1373609:-|nuORF nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2717590332031 3 450.936999 1349.78917 0.66257 0.00029878 -0.43765 -0.00019735 0.22492 0.00010142 450.9368541853356 27.243 0.17767 27.272 27.197 27.375 0.028664 18 7 3 0 0 0 0.62014 1 14152 14152 10.315 0.55098 1 10849000 42462 10015 28230 28940 49870 49870 0.12826335257045685 NLRSRVHF 8 Unmodified _NLRSRVHF_ 0 0 0 REV__ZNF221|p.R320H|1|0.17|ENSG00000159905|chr19:43966461-43966461|G/A|missense_variant REV__ZNF221|p.R320H|1|0.17|ENSG00000159905|chr19:43966461-43966461|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3136596679688 2 514.79105 1027.56755 0.57265 0.0002948 1.921 0.00098891 2.4936 0.0012837 514.792619192935 67.895 0.22377 67.413 67.275 67.498 -0.48218 14 9 2 0 0 0 8.7369 1 37136 37136 2.5775 0 1 655500 + 42463 30137 28231 28941 49871 49871 0.05486520351382751 NLRVQGWHALY 11 Unmodified _NLRVQGWHALY_ 0 0 0 ENST00000588681.5_1_19:11493544-11493772:-|nuORF ENST00000588681.5_1_19:11493544-11493772:-|nuORF ENST00000588681.5_1_19:11493544-11493772:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 678.8632202148438 2 678.862203 1355.70985 0.46392 0.00031494 1.1988 0.00081381 1.6627 0.0011287 678.8630034185283 72.172 0.44518 72.211 71.994 72.439 0.039024 69 21 4 0 0 0 0.62014 1 39679 39679 13.042 13.042 1 57336000 42464 15652 28232 28942 49872 49872 0.04622688302902134 NLSDIVNDY 9 Unmodified _NLSDIVNDY_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2462158203125 2 526.748379 1051.4822 0.5051 0.00026606 -0.73425 -0.00038676 -0.22914 -0.0001207 526.7482770916031 45.029 0.36523 40.177 40.036 40.401 -4.852 34 23 2 0 0 0 0.1773 1 27561 27561 25.399 1.3787 1 13000000 42465 9681 28233 28943 49873 49873 -0.0414773441559646 NLSEEEHNSI 10 Unmodified _NLSEEEHNSI_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK;ENST00000484791.1_1_3:43373671-43382028:+|nuORF ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2666625976562 2 586.264924 1170.5153 0.36956 0.00021666 -3.1301 -0.0018351 -2.7606 -0.0016184 586.2641792616266 39.012 0.36368 39.012 38.79 39.154 0 60 16 5 0 0 0 0.50362 1 20951 20951 16.149 0.90062 1 6973300 42466 7065 28234 28944 49874 49874 -0.06314152363552239 NLSIFIWHF 9 Unmodified _NLSIFIWHF_ 0 0 0 REV__ENST00000361523.8_1_17:40962415-40962475:-|nuORF REV__ENST00000361523.8_1_17:40962415-40962475:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.1880493164062 3 392.878198 1175.61277 1.2405 0.00048735 -2.6925 -0.0010578 -1.4521 -0.00057049 393.21187536578776 34.929 0.30386 30.834 30.65 30.954 -4.0951 28 17 2 0 0 0 0.20207 1 20252 20252 7.609 1.8255 1 5702300 + 42467 25927 28235 28945 49875 49875 0.031983260938886815 NLSIVTELPY 10 Unmodified _NLSIVTELPY_ 0 0 0 REV__chr7:40509545-40684056|64|10.47|0.46|4.51|+|1|TE_info:L1MD2,L1MD2_dup4140,L1,LINE,donor,-,40509192,40509545|None,SUGCT|2 REV__chr7:40509545-40684056|64|10.47|0.46|4.51|+|1|TE_info:L1MD2,L1MD2_dup4140,L1,LINE,donor,-,40509192,40509545|None,SUGCT|2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5438842773438 3 383.544773 1147.61249 -0.78101 -0.00029955 0.056914 2.1829E-05 -0.7241 -0.00027772 383.54500316845116 28.118 0.15213 28.118 28.057 28.209 0 13 8 2 0 0 0 0.63399 1 14498 14498 5.4027 0 1 2059800 + 42468 16817 28236 28946 49876 49876 0.044588615833845324 NLSNIDQKIIY 11 Unmodified _NLSNIDQKIIY_ 0 0 0 REV__nc|ENSG00000162236|Q13190-3|STX5 REV__nc|ENSG00000162236|Q13190-3|STX5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 660.8251342773438 2 660.861534 1319.70852 0.64118 0.00042373 2.3135 0.0015289 2.9546 0.0019526 660.8626704681772 74.193 0.36822 68.018 67.845 68.213 -6.1757 24 18 2 0 0 0 0.27394 1 48481 48481 16.149 0 1 9953800 + 42469 21630 28237 28947 49877 49877 0.061450094234714925 NLSPGQYYF 9 Unmodified _NLSPGQYYF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1 ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8398742675781 3 363.50643 1087.49746 1.3481 0.00049003 -1.8177 -0.00066074 -0.46964 -0.00017072 363.506353361284 43.207 0.45182 38.442 38.272 38.724 -4.7648 59 31 3 0 0 0 0.46501 1 26189 26189 6.1918 0.89496 1 17335000 42470 2113 28238 28948 49878 49878 -0.04278822827768636 NLTAIELEEL 10 Unmodified _NLTAIELEEL_ 0 0 0 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 REV__nc|ENSG00000173040|Q86UK5-2|EVC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2073669433594 3 382.20805 1143.60232 1.7741 0.00067806 0.73456 0.00028075 2.5086 0.00095882 382.20833587437335 34.033 0.54013 30.048 29.747 30.287 -3.9853 101 29 5 0 0 0 0.57893 1 19726 19726 7.4771 0 1 68839000 + 42471 22699 28239 28949 49879 49879 0.03626253858146811 NLTCPLSL 8 Unmodified _NLTCPLSL_ 0 0 0 REV__nc|ENSG00000090686|Q86UV5-3|USP48 REV__nc|ENSG00000090686|Q86UV5-3|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5567626953125 2 430.730946 859.447339 0.90586 0.00039018 0.86419 0.00037223 1.77 0.00076241 430.73138845611004 34.561 0.48601 30.466 30.214 30.7 -4.0951 67 28 3 0 0 0 0.67481 1 19794 19794 19.439 0 1 58631000 + 42472 17869 28240 28950 49880 49880 0.011993512427466158 NLTGEIVY 8 Unmodified _NLTGEIVY_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF nc|ENSG00000091656|Q86UP3|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4735107421875 1 908.472374 907.465098 0.43788 0.0003978 0.026271 2.3866E-05 0.46415 0.00042167 908.4723387800183 49.784 0.36082 49.784 49.606 49.966 0 50 16 4 0 0 0 0.15558 1 27469 27469 85.357 3.4927 1 45117000 42473 1595 28241 28951 49881 49881 0.007663897692395949 NLTGEIVY 8 Unmodified _NLTGEIVY_ 0 0 0 nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF nc|ENSG00000091656|Q86UP3|ZFHX4 nc|ENSG00000091656|Q86UP3|ZFHX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 908.4724731445312 1 908.472374 907.465098 0.0044754 4.0658E-06 0.1124 0.00010211 0.11688 0.00010618 908.4728951886945 57.953 0.42315 51.926 51.717 52.14 -6.0275 43 23 2 0 0 0 0.15558 1 37006 37006 85.357 3.4927 1 67263000 42474 1595 28241 28951 49882 49882 0.007663897692395949 NLTLEKTL 8 Unmodified _NLTLEKTL_ 0 0 0 REV__ENSG00000083457|ENST00000263087|ITGAE REV__ENSG00000083457|ENST00000263087|ITGAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2769165039062 2 466.276575 930.538597 0.73598 0.00034317 -0.33979 -0.00015844 0.39619 0.00018473 466.27626997612606 66.784 0.25384 66.784 66.658 66.912 0 15 11 2 0 0 0 0.72953 1 37244 37244 14.582 0 1 1397800 + 42475 17719 28242 28952 49883 49883 0.07054938211717854 NLTNKYAAF 9 Unmodified _NLTNKYAAF_ 0 0 0 ENSG00000163116|ENST00000295268|STPG2 ENSG00000163116|ENST00000295268|STPG2 ENSG00000163116|ENST00000295268|STPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2713623046875 2 521.271824 1040.5291 -0.062434 -3.2545E-05 0.092974 4.8465E-05 0.030541 1.592E-05 521.2717536891656 44.383 0.20525 44.361 44.261 44.466 -0.022068 16 9 2 0 0 0 0.43463 1 23806 23806 10.824 2.2306 1 11729000 42476 6954 28243 28953 49884 49884 0.010451699261693648 NLTRRREWRHI 11 Unmodified _NLTRRREWRHI_ 0 0 0 REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.7722778320312 4 384.970917 1535.85456 0.66662 0.00025663 -0.74328 -0.00028614 -0.076668 -2.9515E-05 384.9705532613186 26.233 0.24018 23.282 23.199 23.439 -2.9511 22 13 2 0 0 0 0.30601 1 14479 14479 0.40827 0.31342 1 7655100 + 42477 18087 28244 28954 49885 49885 0.10806749502739876 NLTSGEIVY 9 Unmodified _NLTSGEIVY_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;ENST00000478503.6_1_4:152043245-152086876:-|nuORF ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2568664550781 2 498.25584 994.497126 0.57938 0.00028868 1.5262 0.00076043 2.1056 0.0010491 498.25637370774905 60.828 0.48878 60.828 60.581 61.069 0 38 20 3 0 0 0 0.070838 1 33860 33860 39.957 5.8549 1 6209800 42478 2666 28245 28955 49886 49886 -0.0003424254761057455 NLTTDNANILL 11 Unmodified _NLTTDNANILL_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.3248291015625 2 601.324785 1200.63502 NaN NaN NaN NaN NaN NaN NaN 69.655 1 69.655 69.155 70.155 0 0 0 0 0.81193 1 38805 38805 11.495 2.7493 1 + 42479 169 28246 28956 49887 49887 0.04272460980996584 NLVATMWDEV 10 Unmodified _NLVATMWDEV_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MSMS AL20221201_MKP_PDAC_01 4 393.1912536621094 3 393.190113 1176.54851 NaN NaN NaN NaN NaN NaN NaN 91.416 1 85.241 84.741 85.741 -6.1757 0 0 0 0.97302 1 60430 60430 1.7423 0.52744 1 + 42480 23951 28247 28957 49888 49888 -0.03270241845234523 NLVKHAEV 8 Unmodified _NLVKHAEV_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2548217773438 2 455.261259 908.507966 NaN NaN NaN NaN NaN NaN NaN 103.36 1 103.32 102.82 103.82 -0.047928 0 0 0 0.97444 1 57402 57402 2.3027 0 1 42481 5105 28248 28958 49889 49889 0.05005204617327763 NLVNYVLKKL 10 Unmodified _NLVNYVLKKL_ 0 0 0 nc|ENSG00000164744|Q8TAQ9-2|SUN3;nc|ENSG00000164744|Q8TAQ9-3|SUN3;ENSG00000164744|ENST00000297325|SUN3 nc|ENSG00000164744|Q8TAQ9-2|SUN3 nc|ENSG00000164744|Q8TAQ9-2|SUN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3765869140625 2 602.376623 1202.73869 0.96293 0.00058005 0.12942 7.7958E-05 1.0923 0.000658 602.3765631050113 105.99 0.97316 99.811 99.547 100.52 -6.1757 345 148 3 0 0 0 0.72247 1 71220 71220 0.40072 0.050084 1 11909000 42482 7238 28249 28959 49890 49890 0.14543412879334028 NLVPMIIHL 9 Oxidation (M) _NLVPM(Oxidation (M))IIHL_ NLVPM(1)IIHL NLVPM(50)IIHL 0 0 1 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3096313476562 2 533.309895 1064.60524 0.25251 0.00013467 0.60988 0.00032526 0.86239 0.00045992 533.3103453958735 77.866 0.28957 77.919 77.819 78.109 0.052452 16 11 2 0 0 0 0.040472 1 43045 43045 49.669 30.23 1 2850600 42483 9475 28250 28960 49891 49891 1560 0.07551850501977242 NLVPMIIHL 9 Oxidation (M) _NLVPM(Oxidation (M))IIHL_ NLVPM(1)IIHL NLVPM(40)IIHL 0 0 1 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 ENSG00000186432|ENST00000334256|KPNA4 MSMS AL20221201_MKP_PDAC_01 4 533.3097534179688 2 533.309895 1064.60524 NaN NaN NaN NaN NaN NaN NaN 95.038 1 88.862 88.362 89.362 -6.1757 0 0 0 0.11925 1 62951 62951 40.449 13.565 1 42484 9475 28250 28960 49892 49892 1560 0.07551850501977242 NLVSFIQL 8 Unmodified _NLVSFIQL_ 0 0 0 REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2 REV__nc|ENSG00000112562|Q9H3U7-2|SMOC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7595825195312 2 467.273835 932.533118 0.041343 1.9318E-05 1.2381 0.00057855 1.2795 0.00059787 467.27380044193086 70.222 0.21651 69.743 69.627 69.844 -0.47903 15 10 2 0 0 0 8.7369 1 38446 38446 9.3474 0 1 964990 + 42485 29576 28251 28961 49893 49893 0.06415259419918584 NLVVRIKDE 9 Unmodified _NLVVRIKDE_ 0 0 0 REV__nc|ENSG00000024422|Q9NZN4-2|EHD2 REV__nc|ENSG00000024422|Q9NZN4-2|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5489501953125 3 362.548629 1084.62406 1.6113 0.00058416 -0.8885 -0.00032213 0.72277 0.00026204 362.5486148921036 35.03 0.43677 30.935 30.718 31.155 -4.0951 55 25 3 0 0 0 0.20507 1 20223 20223 22.658 0 1 30539000 + 42486 17126 28252 28962 49894 49894 0.08513103397376653 NLWPMILTL 9 Unmodified _NLWPMILTL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8126831054688 2 550.81227 1099.60999 0.96053 0.00052907 2.9053 0.0016003 3.8658 0.0021293 551.3161631416384 102.32 0.054688 96.148 96.114 96.169 -6.1757 5 3 2 0 0 0 0.30562 1 68674 68674 16.942 5.302 1 4309300 42487 319 28253 28963 49895 49895 0.06416734644722055 NLWPMILTL 9 Oxidation (M) _NLWPM(Oxidation (M))ILTL_ NLWPM(1)ILTL NLWPM(46)ILTL 0 0 1 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MSMS AL20221201_MKP_PDAC_01 4 558.8038330078125 2 558.809728 1115.6049 NaN NaN NaN NaN NaN NaN NaN 101.56 1 95.379 94.879 95.879 -6.1757 0 0 0 0.08978 1 68146 68146 46.021 21.347 1 42488 319 28253 28964 49896 49896 34 0.05172430782113224 NLYHNILNI 9 Unmodified _NLYHNILNI_ 0 0 0 ENSG00000117501|ENST00000367759|MROH9;nc|ENSG00000117501|Q5TGP6|MROH9 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3062744140625 2 557.306198 1112.59784 0.60117 0.00033504 -0.23672 -0.00013192 0.36445 0.00020311 557.3058957255915 57.734 0.16266 57.245 57.147 57.31 -0.48974 14 7 2 0 0 0 0.32871 1 31381 31381 15.847 0 1 2292700 42489 3312 28254 28965 49897 49897 0.04604834225892773 NLYKEETF 8 Unmodified _NLYKEETF_ 0 0 0 REV__ENST00000520868.5_1_8:101715480-101715573:-|nuORF REV__ENST00000520868.5_1_8:101715480-101715573:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2579345703125 2 522.25584 1042.49713 0.54853 0.00028647 -0.23438 -0.0001224 0.31416 0.00016407 522.2558501802393 68.554 0.1936 68.554 68.463 68.656 0 10 8 2 0 0 0 0.80676 1 38230 38230 2.5775 0 1 259160 + 42490 28287 28255 28966 49898 49898 -0.022422425476406715 NLYKEETF 8 Unmodified _NLYKEETF_ 0 0 0 REV__ENST00000520868.5_1_8:101715480-101715573:-|nuORF REV__ENST00000520868.5_1_8:101715480-101715573:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 522.25584 1042.49713 0.54853 0.00028647 -0.23438 -0.0001224 0.31416 0.00016407 522.2558501802393 68.554 0.1936 68.554 68.463 68.656 0 0 0 NaN 2.5775 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 259160 + 42491 28287 28255 28966 -0.022422425476406715 NLYNDRWF 8 Unmodified _NLYNDRWF_ 0 0 0 REV__ENSG00000173988|ENST00000595396|LRRC63 REV__ENSG00000173988|ENST00000595396|LRRC63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2667236328125 2 564.267073 1126.51959 0.3933 0.00022193 -0.071214 -4.0184E-05 0.32209 0.00018174 564.2674891681938 75.208 0.24683 75.208 75.146 75.393 0 20 13 2 0 0 0 0.80143 1 41840 41840 5.7604 1.0044 1 425150 + 42492 22762 28256 28967 49899 49899 -0.03860598359347023 NLYNGTLTLL 10 Unmodified _NLYNGTLTLL_ 0 0 0 REV__nc|ENSG00000105976|P08581-3|MET REV__nc|ENSG00000105976|P08581-3|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3081665039062 2 561.313689 1120.61282 2.0883 0.0011722 1.2711 0.00071351 3.3594 0.0018857 561.3143223378208 100.29 0.19393 100.26 100.18 100.38 -0.036301 17 6 4 0 0 0 0.52888 1 55669 55669 14.838 2.3067 1 49357000 + 42493 18479 28257 28968 49900 49900 0.05734281303261923 NLYPFVKTV 9 Unmodified _NLYPFVKTV_ 0 0 0 nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF nc|ENSG00000138363|P31939-2|ATIC nc|ENSG00000138363|P31939-2|ATIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8082885742188 2 540.808042 1079.60153 0.31202 0.00016874 -0.09359 -5.0614E-05 0.21843 0.00011813 540.8081319085321 60.845 0.33428 60.802 60.653 60.987 -0.04351 39 16 3 0 0 0 0.025842 1 33171 33171 57.722 30.838 1 9470200 42494 5043 28258 28969 49901 49901 0.06491503999745873 NMFSRINY 8 Unmodified _NMFSRINY_ 0 0 0 REV__ENSG00000006788|ENST00000252172|MYH13 REV__ENSG00000006788|ENST00000252172|MYH13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2909545898438 2 522.750201 1043.48585 0.75905 0.00039679 0.29912 0.00015636 1.0582 0.00055316 522.7500653292101 49.332 0.22654 49.332 49.215 49.441 0 20 10 2 0 0 0 8.7369 1 27142 27142 8.5933 0.68312 1 8717500 + 42495 16999 28259 28970 49902 49902 -0.034153431227423425 NMIRSLIIL 9 Unmodified _NMIRSLIIL_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.2229614257812 3 358.223088 1071.64744 NaN NaN NaN NaN NaN NaN NaN 37.155 1 36.905 36.405 37.405 -0.2497 0 0 0 0.84564 1 19517 19517 1.0715 0 1 + 42496 22166 28260 28971 49903 49903 0.11447825910340725 NMKELKELY 9 Unmodified _NMKELKELY_ 0 0 0 ENST00000508722.5_1_5:34839321-34867279:+|nuORF;nc|ENSG00000205838|Q6PF05-2|TTC23L;ENSG00000205838|ENST00000505624|TTC23L;nc|ENSG00000205838|Q6PF05-3|TTC23L ENST00000508722.5_1_5:34839321-34867279:+|nuORF ENST00000508722.5_1_5:34839321-34867279:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8740844726562 3 389.874125 1166.60055 -0.47901 -0.00018675 0.70166 0.00027356 0.22265 8.6806E-05 389.874562642248 20.2 0.2289 20.2 20.081 20.31 0 36 15 3 0 0 0 0.57331 1 10148 10148 2.9952 1.8019 1 1055900 42497 10385 28261 28972 49904 49904 0.023909215685534946 NMKVIPPQD 9 Unmodified _NMKVIPPQD_ 0 0 0 ENSG00000186103|ENST00000334384|ARGFX ENSG00000186103|ENST00000334384|ARGFX ENSG00000186103|ENST00000334384|ARGFX MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.774658203125 2 521.273509 1040.53247 1.0282 0.00053595 -0.21349 -0.00011128 0.81467 0.00042467 521.7745065016453 53.457 0.46573 47.653 47.453 47.918 -5.8042 34 29 2 0 0 0 0.1685 2 33765 33765;33902 26.268 4.5899 1 33617000 42498 9451 28262 28973 49905;49906 49905 0.013820967085393931 NMKYMCIFH 9 Unmodified _NMKYMCIFH_ 0 0 0 ENST00000233813.4_1_2:217540496-217540772:-|nuORF ENST00000233813.4_1_2:217540496-217540772:-|nuORF ENST00000233813.4_1_2:217540496-217540772:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1784057617188 3 396.178386 1185.51333 -0.31722 -0.00012568 -0.46095 -0.00018262 -0.77818 -0.0003083 396.1780948140411 20.771 0.49542 20.799 20.438 20.934 0.028357 36 23 2 0 0 0 0.61256 1 10532 10532 0.26902 0.062163 1 545430 42499 11080 28263 28974 49907 49907 -0.07200899178383224 NMLEAVHTI 9 Oxidation (M) _NM(Oxidation (M))LEAVHTI_ NM(1)LEAVHTI NM(82)LEAVHTI 0 0 1 nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK nc|ENSG00000112742|P33981-2|TTK nc|ENSG00000112742|P33981-2|TTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2621459960938 2 522.263142 1042.51173 0.67921 0.00035472 -0.96415 -0.00050354 -0.28495 -0.00014882 522.2625916849025 38.426 0.21869 38.426 38.379 38.598 0 24 12 3 0 0 0 0.0095811 1 20526 20526 81.613 48.827 1 3324800 42500 2916 28264 28975 49908 49908 504 -0.007824936711358532 NMLEAVHTI 9 Unmodified _NMLEAVHTI_ 0 0 0 nc|ENSG00000112742|P33981-2|TTK;ENSG00000112742|ENST00000369798|TTK nc|ENSG00000112742|P33981-2|TTK nc|ENSG00000112742|P33981-2|TTK MSMS AL20221201_MKP_PDAC_01 4 514.263671875 2 514.265684 1026.51682 NaN NaN NaN NaN NaN NaN NaN 59.896 1 53.781 53.281 54.281 -6.1147 0 0 0 0.0099616 1 38506 38506 92.822 67.423 1 42501 2916 28264 28976 49909 49909 0.004618101914957151 NMLPEHVA 8 Unmodified _NMLPEHVA_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7248840332031 2 455.726195 909.437837 NaN NaN NaN NaN NaN NaN NaN 23.114 1 23.114 22.614 23.614 0 0 0 0 0.97444 1 11774 11774 2.0598 0 1 42502 5005 28265 28977 49910 49910 -0.020504170427898316 NMLPQIFRV 9 Unmodified _NMLPQIFRV_ 0 0 0 ENST00000544258.1_3_12:4598975-4611546:-|nuORF;ENSG00000047621|ENST00000261250|C12orf4 ENST00000544258.1_3_12:4598975-4611546:-|nuORF ENST00000544258.1_3_12:4598975-4611546:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.8140258789062 2 559.312969 1116.61138 1.5185 0.00084931 -1.4949 -0.00083611 0.023598 1.3199E-05 559.8135739013811 96.537 0.1172 90.361 90.305 90.422 -6.1757 9 6 2 0 0 0 0.069627 1 64010 64010 37.974 18.717 1 13610000 42503 688 28266 28978 49911 49911 0.05774368733477786 NMSSQTYVF 9 Oxidation (M) _NM(Oxidation (M))SSQTYVF_ NM(1)SSQTYVF NM(54)SSQTYVF 0 0 1 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7362060546875 2 546.736957 1091.45936 -0.31979 -0.00017484 -0.076612 -4.1887E-05 -0.3964 -0.00021673 546.7369349746947 48.531 0.50973 48.531 48.251 48.761 0 78 24 4 0 0 0 0.032796 1 26536 26536 53.833 43.759 1 46443000 42504 9407 28267 28979 49912 49912 1549 -0.082710768047491 NMSSQTYVF 9 Unmodified _NMSSQTYVF_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7401733398438 2 538.739499 1075.46445 2.0466 0.0011026 0.030396 1.6376E-05 2.077 0.001119 538.7394275506257 62.751 0.47757 56.575 56.302 56.78 -6.1757 71 23 4 0 0 0 0.094149 1 40469 40469 34.402 20.496 1 38734000 42505 9407 28267 28980 49913 49913 -0.07026772942117532 NMTAPAFITIL 11 Unmodified _NMTAPAFITIL_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8882141113281 3 397.886253 1190.63693 1.1814 0.00047006 2.167 0.00086222 3.3484 0.0013323 397.88756182712814 88.861 0.36963 82.685 82.477 82.846 -6.1757 32 20 2 0 0 0 0.21511 1 58607 58607 24.957 0 1 9999200 42506 16367 28268 28981 49914 49914 0.04923798465256368 NMTKHRSYF 9 Unmodified _NMTKHRSYF_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2877197265625 2 592.287482 1182.56041 0.080206 4.7505E-05 0.65814 0.00038981 0.73835 0.00043731 592.2878209805679 91.405 0.45276 91.405 91.186 91.638 0 111 30 5 0 0 0 0.43463 1 50559 50559 10.824 1.4408 1 15476000 + 42507 22894 28269 28982 49915 49915 -0.0235658031137973 NMTSVTNHF 9 Oxidation (M) _NM(Oxidation (M))TSVTNHF_ NM(1)TSVTNHF NM(110)TSVTNHF 0 0 1 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MSMS AL20221201_MKP_PDAC_01 4 533.7350463867188 2 533.734748 1065.45494 NaN NaN NaN NaN NaN NaN NaN 29.381 1 26.079 25.579 26.579 -3.3016 0 0 0 0.023257 1 16497 16497 114.65 84.013 1 42508 1046 28270 28983 49916 49916 173 -0.07516541227664675 NMVAKVDEV 9 Unmodified _NMVAKVDEV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7589111328125 2 502.757692 1003.50083 0.88327 0.00044407 -0.29612 -0.00014888 0.58715 0.00029519 502.7577923203386 39.076 0.51462 34.625 34.361 34.876 -4.4509 48 32 2 0 0 0 0.01958 2 23230 23085;23230 63.961 20.102 1 28304000 42509 10143 28271 28984 49917;49918 49918 -0.0007789604541130757 NMVDIIHSV 9 Oxidation (M) _NM(Oxidation (M))VDIIHSV_ NM(1)VDIIHSV NM(71)VDIIHSV 0 0 1 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2638549804688 2 522.263142 1042.51173 1.1089 0.00057916 -1.181 -0.00061677 -0.072011 -3.7609E-05 522.2629307385207 46.171 0.32571 46.171 46.044 46.369 0 32 15 3 0 0 0 0.013323 1 25240 25240 71.134 49.387 1 7294600 42510 3015 28272 28985 49919 49919 521 -0.007824936711358532 NMVVEYCR 8 Unmodified _NMVVEYCR_ 0 0 0 REV__ENSG00000136051|ENST00000332180|WASHC4 REV__ENSG00000136051|ENST00000332180|WASHC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7787475585938 2 507.230787 1012.44702 -0.34423 -0.00017461 -2.6176 -0.0013277 -2.9618 -0.0015023 507.7300460352427 48.649 0.27436 48.649 48.511 48.786 0 14 12 2 0 0 0 8.7369 1 26769 26769 7.9102 0 1 1314700 + 42511 20132 28273 28986 49920 49920 -0.05870391748771908 NMWFTVLL 8 Unmodified _NMWFTVLL_ 0 0 0 REV__ENST00000336079.7_1_Y:15027660-15027840:+|nuORF REV__ENST00000336079.7_1_Y:15027660-15027840:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.2675170898438 2 512.270238 1022.52592 NaN NaN NaN NaN NaN NaN NaN 75.049 1 68.873 68.373 69.373 -6.1757 0 0 0 0.85111 1 49073 49073 20.871 0.41758 1 + 42512 25643 28274 28987 49921 49921 0.015562035478183134 NMYGKVVTV 9 Oxidation (M) _NM(Oxidation (M))YGKVVTV_ NM(1)YGKVVTV NM(50)YGKVVTV 0 0 1 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7676391601562 2 513.76806 1025.52157 -0.48097 -0.00024711 -0.36241 -0.00018619 -0.84338 -0.0004333 513.7680310426571 33.135 0.45359 33.135 32.811 33.264 0 49 22 3 0 0 0 0.039985 1 17329 17329 49.933 19.296 1 11080000 42513 9785 28275 28988 49922 49922 1573 0.009826943342659433 NMYGKVVTV 9 Oxidation (M) _NM(Oxidation (M))YGKVVTV_ 0 0 1 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.76806 1025.52157 -0.32696 -0.00016798 0.96751 0.00049708 0.64055 0.00032909 513.7687504528282 33.235 0.18121 33.075 32.936 33.118 -0.15918 -0.029685 0.00094281 NaN 49.933 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 949550 42514 9785 28275 28988 1573 0.009826943342659433 NMYGKVVTV 9 Unmodified _NMYGKVVTV_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.771484375 2 505.770603 1009.52665 0.74928 0.00037896 -0.81952 -0.00041449 -0.070246 -3.5528E-05 505.7700664003998 45.806 0.29977 40.851 40.669 40.969 -4.9549 42 19 3 0 0 0 0.023481 1 28116 28116 60.074 34.675 1 23798000 42515 9785 28275 28989 49923 49923 0.022269981968747743 NMYTKYYIH 9 Unmodified _NMYTKYYIH_ 0 0 0 ENSG00000172339|ENST00000370205|ALG14 ENSG00000172339|ENST00000370205|ALG14 ENSG00000172339|ENST00000370205|ALG14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5303039550781 3 411.53047 1231.56958 0.40491 0.00016663 -3.2088 -0.0013205 -2.8038 -0.0011539 411.8632888208743 68.574 0.23502 68.094 67.967 68.202 -0.48071 16 10 2 0 0 0 0.53666 1 37475 37475 2.9952 0.49676 1 1195400 42516 8202 28276 28990 49924 49924 -0.03694231745726029 NNCNCNNCC 9 Unmodified _NNCNCNNCC_ 0 0 0 ENSG00000132749|ENST00000255087|TESMIN ENSG00000132749|ENST00000255087|TESMIN ENSG00000132749|ENST00000255087|TESMIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.1378173828125 2 501.138246 1000.26194 NaN NaN NaN NaN NaN NaN NaN 2.2907 1 2.2737 1.7737 2.7737 -0.017019 0 0 0 0.8622 1 1170 1170 0 0 1 42517 4447 28277 28991 49925 49925 -0.23818065882346673 NNETALTKNY 10 Unmodified _NNETALTKNY_ 0 0 0 REV__ENSG00000164129|ENST00000338566|NPY5R REV__ENSG00000164129|ENST00000338566|NPY5R MSMS AL20221201_MKP_PDAC_01 4 389.859375 3 389.859532 1166.55677 NaN NaN NaN NaN NaN NaN NaN 23.661 1 20.834 20.334 21.334 -2.8273 0 0 0 0.8671 1 12818 12818 5.4027 0 1 + 42518 21876 28278 28992 49926 49926 -0.019849716042244836 NNGLDTWIR 9 Unmodified _NNGLDTWIR_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7762451171875 2 544.777805 1087.54106 0.12447 6.7808E-05 -3.2067 -0.001747 -3.0823 -0.0016792 544.7762672922331 20.446 0.10359 20.457 20.407 20.51 0.010553 8 5 2 0 0 0 0.47846 1 10434 10434 8.7454 1.6437 1 452180 + 42519 23113 28279 28993 49927 49927 0.0007878666935994261 NNGNNKRSIE 10 Unmodified _NNGNNKRSIE_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2875366210938 2 573.286525 1144.5585 0.12901 7.3961E-05 1.4316 0.00082072 1.5606 0.00089468 573.28714959523 20.557 0.11261 20.568 20.488 20.601 0.010553 8 4 2 0 0 0 0.66658 1 10481 10481 10.8 4.5937 1 665440 + 42520 19281 28280 28994 49928 49928 -0.007999177956207859 NNIHDEDC 8 Unmodified _NNIHDEDC_ 0 0 0 ENSG00000187912|ENST00000417570|CLEC17A;ENST00000551730.1_1_19:14710521-14721005:+|nuORF ENSG00000187912|ENST00000417570|CLEC17A ENSG00000187912|ENST00000417570|CLEC17A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.1809997558594 2 480.179806 958.345059 NaN NaN NaN NaN NaN NaN NaN 7.7309 1 7.7309 7.2309 8.2309 0 0 0 0 0.97444 1 3697 3697 0.69038 0.23204 1 42521 9608 28281 28995 49929 49929 -0.13577966566833766 NNIITLDFY 9 Unmodified _NNIITLDFY_ 0 0 0 REV__nc|ENSG00000147044|O14936-3|CASK REV__nc|ENSG00000147044|O14936-3|CASK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2942504882812 2 556.784764 1111.55498 0.79394 0.00044205 0.011291 6.2868E-06 0.80523 0.00044834 556.783918043755 67.778 0.27146 67.296 67.119 67.391 -0.48218 25 11 3 0 0 0 0.19613 1 37057 37057 12.532 0.89125 1 2251600 + 42522 20860 28282 28996 49930 49930 0.0036601937779323634 NNIMRHYL 8 Unmodified _NNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.82470703125 2 530.771468 1059.52838 0.88531 0.0004699 0.20328 0.0001079 1.0886 0.0005778 531.2726855882985 47.252 0.14226 47.217 47.141 47.283 -0.035275 13 6 3 0 0 0 3.2842E-06 1 25466 25466 114.94 68.023 1 1992300 42523 3102 28283 28997 49931 49931 0.0010005200549585425 NNITNHLFY 9 Unmodified _NNITNHLFY_ 0 0 0 REV__ENST00000324324.11_1_15:48434513-48434618:-|nuORF REV__ENST00000324324.11_1_15:48434513-48434618:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2766723632812 2 568.28018 1134.54581 NaN NaN NaN NaN NaN NaN NaN 72.393 1 72.393 71.893 72.893 0 0 0 0 0.82396 1 40310 40310 4.756 0.42677 1 + 42524 25533 28284 28998 49932 49932 -0.0160832918786582 NNKQHCHCNHE 11 Unmodified _NNKQHCHCNHE_ 0 0 0 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 682.2725830078125 2 682.272569 1362.53059 NaN NaN NaN NaN NaN NaN NaN 93.4 1 92.943 92.443 93.443 -0.4574 0 0 0 0.9435 1 51042 51042 0 0 1 42525 4550 28285 28999 49933 49933 -0.1361788731899196 NNLEEHWRKA 10 Unmodified _NNLEEHWRKA_ 0 0 0 ENSG00000249961|ENST00000433154|TERB1;nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1 ENSG00000249961|ENST00000433154|TERB1 ENSG00000249961|ENST00000433154|TERB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8856201171875 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 54.379 1 54.312 53.812 54.812 -0.066936 0 0 0 0.99008 1 29531 29531 1.7423 0.41263 1 42526 10749 28286 29000 49934 49934 0.0010893450946696248 NNNDGGGL 8 Unmodified _NNNDGGGL_ 0 0 0 ENST00000591325.1_1_19:58790350-58790572:+|nuORF ENST00000591325.1_1_19:58790350-58790572:+|nuORF ENST00000591325.1_1_19:58790350-58790572:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.6630554199219 2 380.664649 759.314745 NaN NaN NaN NaN NaN NaN NaN 55.423 1 55.423 54.923 55.923 0 0 0 0 0.97444 1 30789 30789 0.79363 0.10326 1 42527 15698 28287 29001 49935 49935 -0.074539571696846 NNPSPPLLQDR 11 Unmodified _NNPSPPLLQDR_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5556640625 3 417.554443 1249.6415 -0.051222 -2.1388E-05 2.4306 0.0010149 2.3794 0.00099352 417.88974039293277 15.765 0.076662 15.77 15.737 15.814 0.0053759 8 5 2 0 0 0 0.7187 1 7879 7879 1.0136 0.38675 1 398330 + 42528 20562 28288 29002 49936 49936 0.02666398932365155 NNPSPPLLQDR 11 Unmodified _NNPSPPLLQDR_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 417.554443 1249.6415 -0.051222 -2.1388E-05 2.4306 0.0010149 2.3794 0.00099352 417.88974039293277 15.765 0.076662 15.77 15.737 15.814 0.0053759 0 0 NaN 1.0136 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 398330 + 42529 20562 28288 29002 0.02666398932365155 NNQPLREWLSS 11 Unmodified _NNQPLREWLSS_ 0 0 0 REV__ENSG00000183161|ENST00000327470|FANCF REV__ENSG00000183161|ENST00000327470|FANCF MSMS AL20221201_MKP_PDAC_01 4 448.5602416992188 3 448.561597 1342.66296 NaN NaN NaN NaN NaN NaN NaN 17.631 1 15.045 14.545 15.545 -2.5866 0 0 0 0.84805 1 9237 9237 9.7643 5.3581 1 + 42530 23327 28289 29003 49937 49937 0.005337839611001982 NNQRHPVY 8 Unmodified _NNQRHPVY_ 0 0 0 REV__nc|ENSG00000152595|Q9NQ76-3|MEPE REV__nc|ENSG00000152595|Q9NQ76-3|MEPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2581176757812 2 514.25704 1026.49953 0.22346 0.00011491 0.052045 2.6764E-05 0.2755 0.00014168 514.2571499777818 76.059 0.35381 76.059 75.894 76.248 0 26 15 2 0 0 0 0.79669 1 42264 42264 8.5933 8.5933 1 2534900 + 42531 21130 28290 29004 49938 49938 -0.012663492992942338 NNQSFLYII 9 Unmodified _NNQSFLYII_ 0 0 0 REV__nc|ENSG00000257127|Q5K131|CLLU1 REV__nc|ENSG00000257127|Q5K131|CLLU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.29248046875 2 556.292756 1110.57096 1.105 0.0006147 -0.62625 -0.00034838 0.47874 0.00026632 556.2924406134488 74.79 0.36441 68.614 68.437 68.801 -6.1757 33 18 2 0 0 0 0.1773 1 48838 48838 25.399 2.2509 1 27065000 + 42532 29985 28291 29005 49939 49939 0.02009725614720992 NNQVSFLHVY 10 Unmodified _NNQVSFLHVY_ 0 0 0 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.8082275390625 2 610.806562 1219.59857 1.1646 0.00071135 2.2629 0.0013822 3.4275 0.0020936 611.3091847281798 37.379 0.22125 33.095 32.955 33.177 -4.2835 19 12 2 0 0 0 0.23227 1 21969 21969 10.824 2.2306 1 3966100 42533 3368 28292 29006 49940 49940 -0.0024437112506348058 NNRRCFEEDF 10 Unmodified _NNRRCFEEDF_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.288818359375 2 665.285668 1328.55678 NaN NaN NaN NaN NaN NaN NaN 68.354 1 68.354 67.854 68.854 0 0 0 0 0.99091 1 38104 38104 1.6526 0 1 42534 4070 28293 29007 49941 49941 -0.094352948759024 NNSFTHEALT 10 Unmodified _NNSFTHEALT_ 0 0 0 ENSG00000182934|ENST00000332118|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF ENSG00000182934|ENST00000332118|SRPRA ENSG00000182934|ENST00000332118|SRPRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.26416015625 2 567.264727 1132.5149 -0.52157 -0.00029587 1.9725 0.0011189 1.4509 0.00082304 567.2654416113879 28.179 0.18625 28.179 28.065 28.251 0 14 9 2 0 0 0 0.68539 1 14563 14563 4.5289 3.3355 1 789560 42535 9101 28294 29008 49942 49942 -0.04605527292778788 NNSLILEENKI 11 Unmodified _NNSLILEENKI_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.57080078125 3 429.56987 1285.68778 1.3257 0.00056949 0.83208 0.00035744 2.1578 0.00092692 429.57024640925033 21.57 0.32621 18.835 18.669 18.995 -2.7348 74 23 4 0 0 0 0.61596 1 11612 11612 10.527 0 1 8283100 42536 932 28295 29009 49943 49943 0.05636419043821661 NNTAEPGKF 9 Unmodified _NNTAEPGKF_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.0857238769531 2 489.237981 976.461409 0.64232 0.00031425 -2.3115 -0.0011309 -1.6691 -0.00081661 489.23812608689246 32.697 0.22092 28.84 28.753 28.974 -3.8562 15 11 2 0 0 0 0.12771 1 18749 18749 27.629 6.0918 1 6528800 42537 5033 28296 29010 49944 49944 -0.02776280004616183 NNTAEPGKF 9 Unmodified _NNTAEPGKF_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 489.237981 976.461409 -0.46928 -0.00022959 -9.6077 -0.0047005 -10.077 -0.0049301 489.234466612286 28.672 0.062422 28.672 28.641 28.704 0 -0.084294 -0.0052127 NaN 27.629 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 716090 42538 5033 28296 29010 -0.02776280004616183 NNWRRKRRWKR 11 Unmodified _NNWRRKRRWKR_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.4819946289062 2 828.48254 1654.95053 NaN NaN NaN NaN NaN NaN NaN 85.531 1 85.593 85.093 86.093 0.061638 0 0 0 0.9435 1 47346 47346 0 0 1 + 42539 28735 28297 29011 49945 49945 0.1492494213343889 NPAAHTFTY 9 Unmodified _NPAAHTFTY_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2447814941406 2 511.240524 1020.46649 0.96108 0.00049135 2.2126 0.0011312 3.1737 0.0016225 511.24136148256264 37.043 0.31715 32.759 32.54 32.857 -4.2835 42 19 3 0 0 0 0.07916 1 21622 21622 37.974 1.847 1 26824000 42540 9279 28298 29012 49946 49946 -0.04291976141996656 NPADALLSV 9 Unmodified _NPADALLSV_ 0 0 0 REV__ENST00000467818.1_1_21:43696971-43706199:+|nuORF REV__ENST00000467818.1_1_21:43696971-43706199:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 901.4910278320312 1 899.483273 898.475997 0.32176 0.00028942 0.1526 0.00013726 0.47436 0.00042668 899.4834695066345 60.851 0.27998 60.851 60.695 60.975 0 28 11 3 0 0 0 0.56345 1 33910 33910 3.5965 1.2938 1 3426700 + 42541 27441 28299 29013 49947 49947 0.02269792143522409 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2690734863281 2 495.26875 988.522947 0.19237 9.5274E-05 1.2506 0.0006194 1.443 0.00071468 495.26936141248734 85.829 0.41632 85.829 85.604 86.02 0 53 17 4 0 0 0 0.044011 2 47594 47494;47594 47.749 20.865 1 4662500 42542 1921 28300 29014 49948;49949 49949 0.02822651694657452 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.5292358398438 1 989.530224 988.522947 0.012944 1.2808E-05 1.809 0.0017901 1.822 0.0018029 989.5314598823766 85.818 0.31711 85.818 85.655 85.972 0 28 13 3 0 0 0 0.08691 2 47505 47505;47607 36.127 17.947 1 1104400 42543 1921 28300 29014 49950;49951 49950 0.02822651694657452 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2688903808594 2 495.26875 988.522947 0.59701 0.00029568 -0.018527 -9.1759E-06 0.57848 0.0002865 495.26874380671296 86.323 0.54501 85.82 85.544 86.089 -0.50318 80 22 4 0 0 0 0.011968 3 47315 47124;47213;47315 74.929 40.827 1 27571000 42544 1921 28300 29014 49952;49953;49954 49954 0.02822651694657452 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 989.5302734375 1 989.530224 988.522947 0.38446 0.00038044 1.3476 0.0013335 1.7321 0.001714 989.5299099936258 86.324 0.44992 85.821 85.57 86.02 -0.50318 49 18 3 0 0 0 0.0036082 2 47248 47150;47248 123.45 73.782 1 8149200 42545 1921 28300 29014 49955;49956 49956 0.02822651694657452 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2696228027344 2 495.26875 988.522947 0.92183 0.00045655 0.40346 0.00019982 1.3253 0.00065637 495.26901210893305 93.797 0.92852 87.622 87.207 88.135 -6.1757 167 55 4 0 0 0 0.0090948 5 61980 61849;61980;62112;62249;62383 85.272 40.827 1 152610000 42546 1921 28300 29014 49957;49958;49959;49960;49961 49958 0.02822651694657452 NPADITVLF 9 Unmodified _NPADITVLF_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENST00000478389.5_1_20:57565995-57566166:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 989.5293579101562 1 989.530224 988.522947 0.83095 0.00082225 -0.045578 -4.5101E-05 0.78537 0.00077715 989.5301081169616 93.778 0.66092 87.603 87.272 87.932 -6.1757 95 38 3 0 0 0 0.0014543 4 62039 61915;62039;62173;62308 136.33 77.655 1 36443000 42547 1921 28300 29014 49962;49963;49964;49965 49963 0.02822651694657452 NPADSISHVAY 11 Unmodified _NPADSISHVAY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2802734375 2 587.280377 1172.5462 0.19791 0.00011623 -0.20104 -0.00011807 -0.0031356 -1.8414E-06 587.2801373066395 39.311 0.55919 39.311 39.036 39.595 0 94 26 5 0 0 0 0.00086394 2 21173 21058;21173 103.42 79.63 1 137060000 42548 9805 28301 29015 49966;49967 49967 -0.03316954258639271 NPADSISHVAY 11 Unmodified _NPADSISHVAY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2806396484375 2 587.280377 1172.5462 -0.081927 -4.8114E-05 -0.053284 -3.1293E-05 -0.13521 -7.9407E-05 587.280439074381 39.706 0.41653 39.409 39.175 39.592 -0.29716 49 19 3 0 0 0 0.0043436 2 20977 20875;20977 93.166 72.712 1 14286000 42549 9805 28301 29015 49968;49969 49969 -0.03316954258639271 NPADSISHVAY 11 Unmodified _NPADSISHVAY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2808837890625 2 587.280377 1172.5462 0.45828 0.00026914 -0.51273 -0.00030112 -0.054448 -3.1976E-05 587.280039815504 39.323 0.31509 39.334 39.174 39.489 0.011452 25 14 2 0 0 0 0.37603 1 20928 20928 22.736 13.991 1 2010000 42550 9805 28301 29015 49970 49970 -0.03316954258639271 NPADSISHVAY 11 Unmodified _NPADSISHVAY_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2806396484375 2 587.280377 1172.5462 0.51205 0.00030072 -0.4515 -0.00026516 0.060549 3.556E-05 587.2802942006527 45.531 0.54832 40.576 40.284 40.832 -4.9549 68 37 4 0 0 0 0.00086394 2 28040 27899;28040 93.938 75.792 1 423710000 42551 9805 28301 29015 49971;49972 49972 -0.03316954258639271 NPAIRVFEY 9 Unmodified _NPAIRVFEY_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.79296875 2 554.792924 1107.57129 -0.73013 -0.00040507 0.35354 0.00019614 -0.37659 -0.00020893 554.793353990851 56.317 0.28274 55.831 55.689 55.972 -0.48554 40 14 4 0 0 0 0.016448 2 30545 30545;30646 82.529 38.671 1 32814000 42552 4257 28302 29016 49973;49974 49973 0.021811453345662812 NPAIRVFEY 9 Unmodified _NPAIRVFEY_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.793212890625 2 554.792924 1107.57129 -0.31687 -0.0001758 0.51324 0.00028474 0.19637 0.00010894 554.7932521114535 55.998 0.23678 55.929 55.839 56.075 -0.068741 26 12 3 0 0 0 0.01861 1 30433 30433 79.596 43.469 1 4849000 42553 4257 28302 29016 49975 49975 0.021811453345662812 NPAIRVFEY 9 Unmodified _NPAIRVFEY_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7938232421875 2 554.792924 1107.57129 0.89513 0.00049661 -1.1438 -0.00063457 -0.24866 -0.00013796 554.7920372984972 61.805 0.22289 55.629 55.537 55.76 -6.1757 20 11 2 0 0 0 0.094905 1 39836 39836 36.506 7.4246 1 92257000 42554 4257 28302 29016 49976 49976 0.021811453345662812 NPAIVALVY 9 Unmodified _NPAIVALVY_ 0 0 0 nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000417282.1_1_7:56372411-56373020:-|nuORF nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000154001|Q16537-3|PPP2R5E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 959.5576782226562 1 959.556044 958.548768 -0.089162 -8.5555E-05 0.88785 0.00085194 0.79869 0.00076639 959.5572260328395 78.698 0.3595 78.212 78.035 78.394 -0.48596 28 13 3 0 0 0 0.016184 2 43058 43058;43157 67.344 42.67 1 2939800 42555 6288 28303 29017 49977;49978 49977 0.06783545936934843 NPAIVALVY 9 Unmodified _NPAIVALVY_ 0 0 0 nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000417282.1_1_7:56372411-56373020:-|nuORF nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000154001|Q16537-3|PPP2R5E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7461242675781 2 480.28166 958.548768 0.1125 5.4029E-05 0.40093 0.00019256 0.51343 0.00024659 480.2820347200779 78.685 0.42317 78.199 77.971 78.394 -0.48596 36 16 3 0 0 0 0.062767 1 43113 43113 48.346 22.005 1 3135200 42556 6288 28303 29017 49979 49979 0.06783545936934843 NPAIVALVY 9 Unmodified _NPAIVALVY_ 0 0 0 nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E;ENST00000417282.1_1_7:56372411-56373020:-|nuORF nc|ENSG00000154001|Q16537-3|PPP2R5E nc|ENSG00000154001|Q16537-3|PPP2R5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.5562133789062 1 959.556044 958.548768 0.68505 0.00065734 0.25271 0.00024249 0.93776 0.00089983 959.5560262754345 85.797 0.33365 79.622 79.495 79.829 -6.1757 23 18 2 0 0 0 0.0090851 2 56509 56509;56640 85.357 51.254 1 10529000 42557 6288 28303 29017 49980;49981 49980 0.06783545936934843 NPAKDNFTF 9 Unmodified _NPAKDNFTF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2543334960938 2 527.253631 1052.49271 0.45642 0.00024065 0.10109 5.3301E-05 0.55751 0.00029395 527.2535918662885 43.273 0.42401 43.273 43.102 43.526 0 31 20 3 0 0 0 0.047788 1 23495 23495 45.7 29.551 1 15270000 42558 1918 28304 29018 49982 49982 -0.031437069705361864 NPAKDNFTF 9 Unmodified _NPAKDNFTF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2528076171875 2 527.253631 1052.49271 0.086005 4.5347E-05 0.26595 0.00014022 0.35195 0.00018557 527.2537124054211 43.45 0.186 43.14 43.086 43.272 -0.31039 12 8 2 0 0 0 0.0082353 1 23134 23134 96.111 63.805 1 7084500 42559 1918 28304 29018 49983 49983 -0.031437069705361864 NPAKDNFTF 9 Unmodified _NPAKDNFTF_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.253662109375 2 527.253631 1052.49271 1.5234 0.00080324 -0.48255 -0.00025443 1.0409 0.00054882 527.2530831801434 47.759 0.43249 42.525 42.279 42.711 -5.2339 47 25 2 0 0 0 0.0086209 2 29714 29584;29714 103.42 64.001 1 42862000 42560 1918 28304 29018 49984;49985 49985 -0.031437069705361864 NPALEFIKY 9 Unmodified _NPALEFIKY_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000534922.5_1_12:133202008-133209092:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7976684570312 2 547.797675 1093.5808 0.48344 0.00026483 1.3775 0.00075459 1.8609 0.0010194 547.7976308892045 64.038 0.24897 63.553 63.447 63.696 -0.48512 21 12 2 0 0 0 0.017075 1 34938 34938 66.457 47.2 1 1359500 42561 8655 28305 29019 49986 49986 0.03774913620077314 NPALENLVY 9 Unmodified _NPALENLVY_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7721557617188 2 516.771657 1031.52876 0.251 0.00012971 1.4087 0.00072797 1.6597 0.00085768 516.7723802716058 65.66 0.29126 65.66 65.447 65.738 0 17 11 2 0 0 0 0.010818 1 36584 36584 78.149 38.192 1 7477800 42562 4060 28306 29020 49987 49987 0.014257502063173888 NPALLSSPYY 10 Unmodified _NPALLSSPYY_ 0 0 0 ENSG00000075891|ENST00000355243|PAX2;nc|ENSG00000075891|Q02962|PAX2;ENST00000370296.6_1_10:102584725-102587373:+|nuORF ENSG00000075891|ENST00000355243|PAX2 ENSG00000075891|ENST00000355243|PAX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.3016357421875 2 562.784764 1123.55498 0.72736 0.00040935 0.83128 0.00046783 1.5586 0.00087718 562.783977315172 48.003 0.23525 47.651 47.575 47.81 -0.3526 24 11 3 0 0 0 0.23566 1 25711 25711 7.2892 0 1 3819300 42563 1173 28307 29021 49988 49988 -0.0018598062217733968 NPANISVAL 9 Unmodified _NPANISVAL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000543406.1_1_11:60709452-60709686:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7536926269531 2 449.753267 897.491981 0.41926 0.00018856 0.47656 0.00021433 0.89582 0.0004029 449.7534742214568 58.559 0.33356 58.559 58.39 58.723 0 33 13 3 0 0 0 0.042911 1 32580 32580 48.346 21.462 1 3424500 42564 2721 28308 29022 49989 49989 0.03913498380427427 NPANISVAL 9 Unmodified _NPANISVAL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000543406.1_1_11:60709452-60709686:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4992065429688 1 898.499258 897.491981 0.084813 7.6204E-05 0.22655 0.00020356 0.31137 0.00027976 898.499221143006 58.554 0.23549 58.554 58.441 58.677 0 13 9 2 0 0 0 0.042911 1 32603 32603 48.346 26.599 1 650000 42565 2721 28308 29022 49990 49990 0.03913498380427427 NPANISVAL 9 Unmodified _NPANISVAL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000543406.1_1_11:60709452-60709686:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7536926269531 2 449.753267 897.491981 0.21718 9.7679E-05 1.2291 0.00055278 1.4462 0.00065046 449.7538418448958 59.065 0.27425 58.574 58.432 58.707 -0.49079 22 12 2 0 0 0 0.070838 1 32116 32116 39.957 18.211 1 2060800 42566 2721 28308 29022 49991 49991 0.03913498380427427 NPANISVAL 9 Unmodified _NPANISVAL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3;ENST00000543406.1_1_11:60709452-60709686:-|nuORF ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MSMS AL20221201_MKP_PDAC_01 4 449.75439453125 2 449.753267 897.491981 NaN NaN NaN NaN NaN NaN NaN 66.145 1 59.97 59.47 60.47 -6.1757 0 0 0 0.04157 1 43004 43004 61.357 29.052 1 42567 2721 28308 29022 49992 49992 0.03913498380427427 NPAPNPAVY 9 Unmodified _NPAPNPAVY_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8;nc|ENSG00000117751|Q12972-3|PPP1R8;ENST00000486634.2_1_1:28176630-28178160:+|nuORF;nc|ENSG00000117751|Q12972-2|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.73779296875 2 471.737617 941.460681 0.18296 8.6307E-05 0.19501 9.1991E-05 0.37796 0.0001783 471.73765050273465 35.739 0.41827 35.739 35.574 35.993 0 54 20 4 0 0 0 0.0086179 2 18963 18859;18963 89.427 58.473 1 29648000 42568 3337 28309 29023 49993;49994 49994 -0.012390746536766528 NPAPNPAVY 9 Unmodified _NPAPNPAVY_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8;nc|ENSG00000117751|Q12972-3|PPP1R8;ENST00000486634.2_1_1:28176630-28178160:+|nuORF;nc|ENSG00000117751|Q12972-2|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.46728515625 1 942.467958 941.460681 -0.26246 -0.00024736 0.63367 0.00059722 0.37121 0.00034985 942.4685331487618 35.751 0.26337 35.751 35.594 35.858 0 22 12 2 0 0 0 0.0041763 1 18868 18868 120.45 72.105 1 3415200 42569 3337 28309 29023 49995 49995 -0.012390746536766528 NPAPNPAVY 9 Unmodified _NPAPNPAVY_ 0 0 0 ENSG00000117751|ENST00000311772|PPP1R8;nc|ENSG00000117751|Q12972-3|PPP1R8;ENST00000486634.2_1_1:28176630-28178160:+|nuORF;nc|ENSG00000117751|Q12972-2|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 ENSG00000117751|ENST00000311772|PPP1R8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7381286621094 2 471.737617 941.460681 0.17864 8.4272E-05 -0.022995 -1.0847E-05 0.15565 7.3425E-05 471.7380410486482 41.468 0.48306 36.86 36.612 37.095 -4.6079 57 31 2 0 0 0 0.016184 2 24939 24805;24939 67.344 44.979 1 39130000 42570 3337 28309 29023 49996;49997 49997 -0.012390746536766528 NPAPPIDAV 9 Unmodified _NPAPPIDAV_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.240234375 2 447.239993 892.465432 0.76475 0.00034203 -0.40203 -0.00017981 0.36271 0.00016222 447.23979840509367 47.493 0.40545 47.493 47.339 47.745 0 33 18 2 0 0 0 0.047196 1 26007 26007 46.021 24.274 1 3921100 42571 9058 28310 29024 49998 49998 0.01489809489100935 NPARDAALF 9 Unmodified _NPARDAALF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.75634765625 2 487.756341 973.498129 -0.26409 -0.00012881 0.53578 0.00026133 0.27169 0.00013252 487.7566011009045 41.63 0.342 41.63 41.462 41.804 0 40 17 3 0 0 0 0.0094097 2 22418 22418;22532 82.529 23.85 1 28512000 42572 2053 28311 29025 49999;50000 49999 0.010320166119413443 NPARDAALF 9 Unmodified _NPARDAALF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7562866210938 2 487.756341 973.498129 -0.15575 -7.5968E-05 0.23978 0.00011696 0.084033 4.0988E-05 487.7563138817916 41.808 0.2224 41.501 41.375 41.597 -0.30682 19 10 2 0 0 0 0.012668 1 22163 22163 72.968 14.289 1 9338500 42573 2053 28311 29025 50001 50001 0.010320166119413443 NPARDAALF 9 Unmodified _NPARDAALF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-2|KLF5;nc|ENSG00000102554|Q13887-3|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7567749023438 2 487.756341 973.498129 0.5067 0.00024714 1.0129 0.00049405 1.5196 0.0007412 487.7565611228318 46.269 0.37882 41.314 41.119 41.498 -4.9549 66 25 3 0 0 0 0.021948 2 28497 28497;28648 61.602 19.762 1 51392000 42574 2053 28311 29025 50002;50003 50002 0.010320166119413443 NPASGEKFAY 10 Unmodified _NPASGEKFAY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.259033203125 2 542.258914 1082.50327 -0.11778 -6.3865E-05 -0.27374 -0.00014844 -0.39152 -0.0002123 542.2587208504676 31.71 0.22006 31.71 31.6 31.82 0 18 10 2 0 0 0 0.087043 1 16521 16521 49.554 33.707 1 5095600 42575 259;13088 28312 29026 50004 50004 -0.03467724316078602 NPASHSYVL 9 Unmodified _NPASHSYVL_ 0 0 0 ENST00000477455.5_1_2:74425768-74433128:+|nuORF;ENST00000488086.1_1_2:74425768-74433063:+|nuORF;ENST00000515074.1_1_4:163244087-163244557:+|nuORF;ENSG00000065911|ENST00000394053|MTHFD2 ENST00000477455.5_1_2:74425768-74433128:+|nuORF ENST00000477455.5_1_2:74425768-74433128:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.24853515625 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 38.225 1 33.856 33.356 34.356 -4.3689 0 0 0 0.0058777 1 22518 22518 103.75 42.391 1 42576 919 28313 29027 50005 50005 -0.011636896249456186 NPASKVIAL 9 Unmodified _NPASKVIAL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|23|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7795715332031 2 456.779285 911.544017 0.30807 0.00014072 -0.48387 -0.00022102 -0.17579 -8.0299E-05 456.77932367402997 44.181 0.17336 44.181 44.111 44.284 0 14 8 2 0 0 0 0.0088668 1 24029 24029 87.258 41.237 1 8456500 42577 5318;130;1026 28314 29028 50006 50006 0.08470661794183343 NPASKVIAL 9 Unmodified _NPASKVIAL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|23|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7799987792969 2 456.779285 911.544017 0.7288 0.0003329 0.056525 2.582E-05 0.78532 0.00035872 456.7792468202015 49.143 0.43288 43.747 43.523 43.956 -5.3961 50 28 2 0 0 0 0.0082981 2 30589 30589;30726 107.1 43.537 1 79684000 42578 5318;130;1026 28314 29028 50007;50008 50007 0.08470661794183343 NPASPLPSF 9 Unmodified _NPASPLPSF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.240966796875 2 465.239993 928.465432 0.45404 0.00021124 -0.43299 -0.00020144 0.021047 9.792E-06 465.23988884382965 64.577 0.32417 64.092 63.949 64.273 -0.48512 26 14 2 0 0 0 0.0090948 1 35228 35228 85.272 39.251 1 2240800 42579 763;12747 28315 29029 50009 50009 -0.0016619051089037384 NPASPLPSF 9 Unmodified _NPASPLPSF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-4|SYNE2;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 465.239993 928.465432 0.54489 0.0002535 0.19332 8.9942E-05 0.73821 0.00034344 465.23985397085454 64.094 0.21738 64.094 63.997 64.214 0 0.0013751 0.00052051 NaN 85.272 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 336540 42580 763;12747 28315 29029 -0.0016619051089037384 NPASRLTAL 9 Unmodified _NPASRLTAL_ 0 0 0 ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B;ENSG00000107779|ENST00000372037|BMPR1A ENSG00000138696|ENST00000515059|BMPR1B ENSG00000138696|ENST00000515059|BMPR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7723999023438 2 471.771991 941.529429 0.27542 0.00012994 0.25682 0.00012116 0.53224 0.0002511 471.77194586480607 40.026 0.3119 39.729 39.592 39.903 -0.29716 28 14 3 0 0 0 0.011291 1 21107 21107 76.825 19.103 1 3419200 42581 2517 28316 29030 50010 50010 0.056325896460293734 NPASRLTAL 9 Unmodified _NPASRLTAL_ 0 0 0 ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B;ENSG00000107779|ENST00000372037|BMPR1A ENSG00000138696|ENST00000515059|BMPR1B ENSG00000138696|ENST00000515059|BMPR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.773193359375 2 471.771991 941.529429 0.52995 0.00025002 0.91338 0.00043091 1.4433 0.00068092 471.77158506356903 44.727 0.39275 39.875 39.677 40.069 -4.852 45 31 2 0 0 0 0.21643 1 27392 27392 21.537 3.3906 1 12621000 42582 2517 28316 29030 50011 50011 0.056325896460293734 NPASRLTAL 9 Unmodified _NPASRLTAL_ 0 0 0 ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B;ENSG00000107779|ENST00000372037|BMPR1A ENSG00000138696|ENST00000515059|BMPR1B ENSG00000138696|ENST00000515059|BMPR1B MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 471.771991 941.529429 0.52995 0.00025002 0.91338 0.00043091 1.4433 0.00068092 471.77158506356903 44.727 0.39275 39.875 39.677 40.069 -4.852 0.073003 0.00037057 NaN 76.825 45 31 2 NaN NaN NaN NaN 0 NaN NaN 0 12621000 42583 2517 28316 29030 0.056325896460293734 NPCCLGFIAF 10 2 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))C(Carbamidomethyl (C))LGFIAF_ NPC(1)C(1)LGFIAF NPC(68)C(68)LGFIAF 0 2 0 ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF ENSG00000142089|ENST00000399808|IFITM3 ENSG00000142089|ENST00000399808|IFITM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7752075195312 2 599.772819 1197.53109 -0.36904 -0.00022134 -0.11098 -6.6562E-05 -0.48002 -0.0002879 599.7732586188572 99.805 0.18982 93.629 93.525 93.715 -6.1757 41 13 4 0 0 0 0.02987 1 66542 66542 68.081 38.999 1 257290000 42584 5390 28317 29031 50012 50012 552;553 -0.05977860651842093 NPCEYDLKF 9 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))EYDLKF_ NPC(1)EYDLKF NPC(130)EYDLKF 0 1 0 ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 ENSG00000169696|ENST00000306739|ASPSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7676391601562 2 593.265881 1184.51721 0.41203 0.00024444 -0.50543 -0.00029985 -0.093396 -5.5409E-05 593.2657899342455 57.804 0.47723 51.777 51.48 51.957 -6.0275 81 26 4 0 0 0 0.0033077 2 36877 36877;37007 125.04 102.3 1 228930000 42585 7902 28318 29032 50013;50014 50013 769 -0.06766814879301819 NPCGKVFTL 9 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))GKVFTL_ NPC(1)GKVFTL NPC(50)GKVFTL 0 1 0 ENSG00000171466|ENST00000453372|ZNF562;nc|ENSG00000171469|Q8N587-2|ZNF561;nc|ENSG00000171466|Q6V9R5-2|ZNF562;ENSG00000171469|ENST00000302851|ZNF561 ENSG00000171466|ENST00000453372|ZNF562 ENSG00000171466|ENST00000453372|ZNF562 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2682495117188 2 518.268227 1034.5219 1.2768 0.00066171 -0.13389 -6.9389E-05 1.1429 0.00059232 518.2677065450653 53.943 0.77475 48.078 47.725 48.5 -5.8653 108 46 3 0 0 0 0.039985 1 33958 33958 49.933 25.912 1 125780000 42586 8103 28319 29033 50015 50015 783 0.006021140541179193 NPCKQVSQIKY 11 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))KQVSQIKY_ NPC(1)KQVSQIKY NPC(57)KQVSQIKY 0 1 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.5714416503906 3 455.571216 1363.69182 0.84899 0.00038677 -0.41735 -0.00019013 0.43164 0.00019664 455.57117361244633 28.749 0.38436 25.601 25.38 25.764 -3.1482 50 18 4 0 0 0 0.019688 2 16095 15983;16095 57.477 44.621 1 103400000 42587 3159 28320 29034 50016;50017 50017 327 0.024521852658608623 NPCKQVSQIKY 11 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))KQVSQIKY_ NPC(1)KQVSQIKY NPC(220)KQVSQIKY 0 1 0 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 ENSG00000115758|ENST00000234111|ODC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.8539428710938 2 682.853187 1363.69182 1.1744 0.00080191 -0.76768 -0.00052421 0.40668 0.0002777 682.852780651093 28.726 0.24311 25.578 25.458 25.701 -3.1482 25 11 3 0 0 0 5.3636E-75 1 16042 16042 216.43 143.24 1 16146000 42588 3159 28320 29034 50018 50018 327 0.024521852658608623 NPCSSIPYF 9 Carbamidomethyl (C) _NPC(Carbamidomethyl (C))SSIPYF_ NPC(1)SSIPYF NPC(48)SSIPYF 0 1 0 nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6 nc|ENSG00000115221|P18564-2|ITGB6 nc|ENSG00000115221|P18564-2|ITGB6 MSMS AL20221201_MKP_PDAC_01 4 542.7427368164062 2 542.742042 1083.46953 NaN NaN NaN NaN NaN NaN NaN 73.379 1 67.203 66.703 67.703 -6.1757 0 0 0 0.083082 1 47988 47988 47.749 29.602 1 42589 3098 28321 29035 50019 50019 319 -0.06886469079518065 NPDASYVYY 9 Unmodified _NPDASYVYY_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2373046875 2 546.237647 1090.46074 0.1922 0.00010499 -0.90461 -0.00049413 -0.71241 -0.00038914 546.2370352219805 47.045 0.33305 47.045 46.879 47.212 0 36 15 3 0 0 0 0.013041 1 25804 25804 71.922 45.039 1 10644000 42590 4666 28322 29036 50020 50020 -0.08087119444326163 NPDASYVYY 9 Unmodified _NPDASYVYY_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.238037109375 2 546.237647 1090.46074 1.0609 0.00057949 -0.91526 -0.00049995 0.14561 7.9535E-05 546.2368082771255 54.378 0.39304 48.512 48.32 48.713 -5.8653 36 24 2 0 0 0 0.0082661 1 34449 34449 92.491 58.389 1 15539000 42591 4666 28322 29036 50021 50021 -0.08087119444326163 NPDCHYNDI 9 Unmodified _NPDCHYNDI_ 0 0 0 REV__nc|ENSG00000198788|Q02817|MUC2 REV__nc|ENSG00000198788|Q02817|MUC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1469421386719 3 364.146796 1089.41856 NaN NaN NaN NaN NaN NaN NaN 73.486 1 73.486 72.986 73.986 0 0 0 0 0.84737 1 40913 40913 0.96228 0 1 + 42592 29899 28323 29037 50022 50022 -0.1225741812436354 NPDCIDTAQI 10 Unmodified _NPDCIDTAQI_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7655029296875 2 545.247689 1088.48082 0.39873 0.00021741 -3.3344 -0.0018181 -2.9357 -0.0016007 545.2460857760615 49.192 0.25424 49.192 49.042 49.296 0 18 11 2 0 0 0 0.22489 1 27041 27041 18.146 2.2992 1 1392200 + 42593 21988 28324 29038 50023 50023 -0.05987691776022075 NPDDMVVDY 9 Oxidation (M) _NPDDM(Oxidation (M))VVDY_ NPDDM(1)VVDY NPDDM(46)VVDY 0 0 1 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1;MTUS1|p.E375Dfs*23|1|0.07|ENSG00000129422|chr8:17754679-17754683|TGTCT/-|frameshift_variant nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2185668945312 2 542.218597 1082.42264 0.17695 9.5948E-05 0.46345 0.00025129 0.64041 0.00034724 542.2188006039329 37.753 0.2797 37.753 37.586 37.865 0 20 13 2 0 0 0 0.047788 1 20089 20089 45.7 34.059 1 3564400 42594 16181 28325 29039 50024 50024 1802 -0.11527373421290577 NPDDVFREF 9 Unmodified _NPDDVFREF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.760986328125 2 569.76182 1137.50909 0.76958 0.00043847 -0.15364 -8.7536E-05 0.61594 0.00035094 569.7616751473033 60.355 0.6014 60.355 60.094 60.695 0 87 26 5 0 0 0 0.0086209 3 33569 33569;33672;33786 89.401 60.319 1 60686000 42595 2387 28326 29040 50025;50026;50027 50025 -0.05416625804423347 NPDDVFREF 9 Unmodified _NPDDVFREF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.76025390625 2 569.76182 1137.50909 -0.062511 -3.5616E-05 -0.064429 -3.6709E-05 -0.12694 -7.2325E-05 569.7617153792024 60.886 0.34803 60.396 60.21 60.558 -0.48932 20 16 2 0 0 0 0.025842 2 33134 33134;33236 57.722 34.986 1 6714600 42596 2387 28326 29040 50028;50029 50028 -0.05416625804423347 NPDDVFREF 9 Unmodified _NPDDVFREF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7615356445312 2 569.76182 1137.50909 0.7963 0.0004537 -0.68145 -0.00038826 0.11485 6.5439E-05 569.7614685107159 66.972 0.65961 60.797 60.558 61.217 -6.1757 95 36 3 0 0 0 0.010301 2 43535 43535;43678 79.596 64.758 1 140320000 42597 2387 28326 29040 50030;50031 50030 -0.05416625804423347 NPDGGSYAY 9 Unmodified _NPDGGSYAY_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.37890625 1 943.379202 942.371926 -0.90712 -0.00085576 -0.15733 -0.00014842 -1.0645 -0.0010042 943.3788539283161 27.366 0.42324 27.366 27.215 27.638 0 34 20 3 0 0 0 0.0030184 2 14118 14118;14218 126.57 80.545 1 4069100 42598 4672 28327 29041 50032;50033 50032 -0.10156534683994778 NPDGGSYAY 9 Unmodified _NPDGGSYAY_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.1936645507812 2 472.193239 942.371926 NaN NaN NaN NaN NaN NaN NaN 27.552 1 27.552 27.052 28.052 0 0 0 0 0.50124 1 14199 14199 15.847 7.2539 1 42599 4672 28327 29041 50034 50034 -0.10156534683994778 NPDIGAKQMEF 11 Unmodified _NPDIGAKQMEF_ 0 0 0 REV__nc|ENSG00000174485|Q7Z401|DENND4A REV__nc|ENSG00000174485|Q7Z401|DENND4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.201416015625 3 417.200901 1248.58087 0.52255 0.00021801 0.86376 0.00036036 1.3863 0.00057837 417.2012481876188 40.792 0.2455 40.489 40.356 40.601 -0.30304 28 11 4 0 0 0 0.70069 1 21548 21548 1.9275 0 1 10809000 + 42600 22795 28328 29042 50035 50035 -0.03347454442223352 NPDSRWNTY 9 Unmodified _NPDSRWNTY_ 0 0 0 ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13 ENSG00000107021|ENST00000372648|TBC1D13 ENSG00000107021|ENST00000372648|TBC1D13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.2974853515625 2 576.757069 1151.49959 0.83852 0.00048362 -2.1484 -0.0012391 -1.3099 -0.00075547 576.755823499847 57.797 0.19524 51.769 51.592 51.787 -6.0275 26 10 3 0 0 0 0.20139 1 36895 36895 6.7232 0 1 77604000 42601 2471 28329 29043 50036 50036 -0.0701039408993438 NPDTHSWEM 9 Oxidation (M) _NPDTHSWEM(Oxidation (M))_ NPDTHSWEM(1) NPDTHSWEM(110) 0 0 1 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7205200195312 2 566.721838 1131.42912 0.032195 1.8246E-05 -0.31935 -0.00018098 -0.28715 -0.00016274 566.7217810440372 25.773 0.37574 22.821 22.609 22.984 -2.9511 52 23 3 0 0 0 0.0074135 2 14098 14098;14220 110.67 81.593 1 18959000 42602 5528 28330 29044 50037;50038 50037 1014 -0.13133435469922006 NPDYERFPNF 10 Unmodified _NPDYERFPNF_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MSMS AL20221201_MKP_PDAC_01 4 649.7916870117188 2 649.793652 1297.57275 NaN NaN NaN NaN NaN NaN NaN 36.352 1 32.159 31.659 32.659 -4.1928 0 0 0 0.28083 1 21219 21219 38.176 13.185 1 42603 7434 28331 29045 50039 50039 -0.06413265367336862 NPDYLPCMCR 10 Unmodified _NPDYLPCMCR_ 0 0 0 REV__ENSG00000261609|ENST00000648994|GAN REV__ENSG00000261609|ENST00000648994|GAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5048217773438 3 404.50505 1210.49332 0.11566 4.6785E-05 -0.30206 -0.00012218 -0.1864 -7.54E-05 404.5048592257951 39.318 0.24748 39.318 39.177 39.424 0 21 11 2 0 0 0 0.68539 1 21076 21076 2.4348 0 1 2103900 + 42604 24586 28332 29046 50040 50040 -0.10350694908993319 NPDYRKRVSV 10 Unmodified _NPDYRKRVSV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8949890136719 3 411.894799 1232.66257 1.3673 0.00056317 -0.39926 -0.00016445 0.968 0.00039872 411.894477381582 21.177 0.45741 18.484 18.167 18.624 -2.693 66 25 4 0 0 0 0.63668 1 11238 11238 9.2438 3.4603 1 40810000 42605 8363 28333 29047 50041 50041 0.055544090319017414 NPDYRKRVSV 10 Unmodified _NPDYRKRVSV_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MSMS AL20221201_MKP_PDAC_01 4 617.3395385742188 2 617.338561 1232.66257 NaN NaN NaN NaN NaN NaN NaN 21.171 1 18.478 17.978 18.978 -2.693 0 0 0 0.90015 1 11310 11310 5.2969 2.0156 1 42606 8363 28333 29047 50042 50042 0.055544090319017414 NPEAAVHIF 9 Unmodified _NPEAAVHIF_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.8735046386719 2 499.258717 996.50288 0.29416 0.00014686 -1.2017 -0.00059994 -0.9075 -0.00045308 499.2581383832835 52.561 0.39655 52.561 52.402 52.798 0 36 17 3 0 0 0 0.062767 1 29058 29058 39.957 27.426 1 11123000 42607 5034 28334 29048 50043 50043 0.0044890075471357704 NPEAAVHIF 9 Unmodified _NPEAAVHIF_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2588195800781 2 499.258717 996.50288 0.18227 9.0999E-05 0.36457 0.00018201 0.54684 0.00027301 499.2588060555719 53.016 0.24403 52.564 52.438 52.682 -0.45173 19 12 2 0 0 0 0.010877 1 28664 28664 77.984 45.867 1 2284300 42608 5034 28334 29048 50044 50044 0.0044890075471357704 NPEAAVHIF 9 Unmodified _NPEAAVHIF_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2591552734375 2 499.258717 996.50288 1.3575 0.00067773 -0.23358 -0.00011662 1.1239 0.00056111 499.2584136302015 58.426 0.36409 52.351 52.145 52.509 -6.0745 35 19 2 0 0 0 0.0026776 1 37374 37374 128.37 70.894 1 13446000 42609 5034 28334 29048 50045 50045 0.0044890075471357704 NPEDLIWHTPE 11 Unmodified _NPEDLIWHTPE_ 0 0 0 ENSG00000146085|ENST00000274813|MMUT ENSG00000146085|ENST00000274813|MMUT ENSG00000146085|ENST00000274813|MMUT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8226928710938 2 675.819867 1349.62518 NaN NaN NaN NaN NaN NaN NaN 45.02 1 45.02 44.52 45.52 0 0 0 0 0.58065 1 24519 24519 21.537 4.4241 1 42610 5754 28335 29049 50046 50046 -0.03564727024354397 NPEDVARLIF 10 Unmodified _NPEDVARLIF_ 0 0 0 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 ENSG00000187522|ENST00000378372|HSPA14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.3140258789062 2 587.316763 1172.61897 -0.72673 -0.00042682 0.56845 0.00033386 -0.15828 -9.2958E-05 587.3171443808048 78.113 0.32981 77.63 77.494 77.824 -0.4826 41 18 3 0 0 0 0.01173 2 42736 42736;42839 84.522 53.886 1 3875800 42611 9558 28336 29050 50047;50048 50047 0.0395679953473973 NPEEHATYY 9 Unmodified _NPEEHATYY_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2376708984375 2 562.238178 1122.4618 -0.093561 -5.2604E-05 1.2574 0.00070698 1.1639 0.00065437 562.2382447044738 24.035 0.24519 24.035 23.893 24.138 0 22 11 3 0 0 0 0.19127 1 12280 12280 24.021 3.1494 1 687230 42612 1358 28337 29051 50049 50049 -0.09452905075431772 NPEEHTILEF 10 Unmodified _NPEEHTILEF_ 0 0 0 ENST00000497604.1_1_2:106710484-106717684:-|nuORF;nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1 ENST00000497604.1_1_2:106710484-106717684:-|nuORF ENST00000497604.1_1_2:106710484-106717684:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7943115234375 2 614.79586 1227.57717 0.75955 0.00046697 0.33384 0.00020524 1.0934 0.00067221 614.7957404182936 60.156 0.32233 60.156 60.046 60.368 0 30 13 3 0 0 0 0.0057332 1 33546 33546 96.367 67.285 1 4194200 42613 3149 28338 29052 50050 50050 -0.027518009444293057 NPEESPYPYF 10 Unmodified _NPEESPYPYF_ 0 0 0 ENST00000527808.1_1_11:102219126-102219376:+|nuORF;ENST00000534646.5_1_11:102217957-102219379:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.848388671875 3 414.848633 1241.52407 -0.48532 -0.00020133 -0.38344 -0.00015907 -0.86876 -0.0003604 414.84848254112586 40.854 0.60591 40.854 40.675 41.281 0 160 49 4 0 0 0 0.66569 3 21937 21937;22046;22160 6.1918 6.1918 1 125940000 42614 14842 28339 29053 50051;50052;50053 50051 -0.08703178727114391 NPEESPYPYF 10 Unmodified _NPEESPYPYF_ 0 0 0 ENST00000527808.1_1_11:102219126-102219376:+|nuORF;ENST00000534646.5_1_11:102217957-102219379:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.8492431640625 3 414.848633 1241.52407 0.65947 0.00027358 0.65848 0.00027317 1.318 0.00054675 414.8488951669111 46.515 0.26389 41.435 41.244 41.507 -5.0805 53 29 2 0 0 0 0.56348 1 28670 28670 11.518 1.2026 1 66600000 42615 14842 28339 29053 50054 50054 -0.08703178727114391 NPEESPYPYF 10 Unmodified _NPEESPYPYF_ 0 0 0 ENST00000527808.1_1_11:102219126-102219376:+|nuORF;ENST00000534646.5_1_11:102217957-102219379:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.8491516113281 3 414.848633 1241.52407 0.62343 0.00025863 0.49204 0.00020412 1.1155 0.00046275 414.8490756613137 46.616 0.069294 41.535 41.495 41.564 -5.0805 23 16 2 0 0 0 0.46514 1 28824 28824 11.518 1.2026 1 53566000 42616 14842 28339 29053 50055 50055 -0.08703178727114391 NPEESPYPYF 10 Unmodified _NPEESPYPYF_ 0 0 0 ENST00000527808.1_1_11:102219126-102219376:+|nuORF;ENST00000534646.5_1_11:102217957-102219379:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF ENST00000527808.1_1_11:102219126-102219376:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.850341796875 3 414.848633 1241.52407 NaN NaN NaN NaN NaN NaN NaN 46.816 1 41.735 41.235 42.235 -5.0805 0 0 0 0.78298 1 28984 28984 7.9454 0.46833 1 42617 14842 28339 29053 50056 50056 -0.08703178727114391 NPEHASVAM 9 Oxidation (M) _NPEHASVAM(Oxidation (M))_ NPEHASVAM(1) NPEHASVAM(89) 0 0 1 ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3;ENST00000491240.5_1_X:48433911-48434199:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2172546386719 2 486.216192 970.41783 0.18702 9.0931E-05 0.6677 0.00032465 0.85472 0.00041558 486.21649434808387 15.405 0.2511 12.878 12.762 13.013 -2.5273 85 56 2 0 0 0 0.0086722 2 7846 7846;7950 107.19 69.036 1 3682700 42618 2037 28340 29054 50057;50058 50057 351 -0.06856212773391235 NPEHASVAM 9 Unmodified _NPEHASVAM_ 0 0 0 ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3;ENST00000491240.5_1_X:48433911-48434199:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2192687988281 2 478.218734 954.422915 -0.048523 -2.3205E-05 0.57066 0.0002729 0.52214 0.0002497 478.219120475593 25.466 0.36028 22.583 22.387 22.748 -2.8831 58 19 4 0 0 0 0.025842 2 13999 13894;13999 57.722 29.235 1 18410000 42619 2037 28340 29055 50059;50060 50060 -0.05611908910782404 NPEINKAVL 9 Unmodified _NPEINKAVL_ 0 0 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813316-85813502:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2872314453125 2 499.287474 996.560395 0.4346 0.00021699 -0.71858 -0.00035878 -0.28398 -0.00014179 499.2870353142061 38.157 0.19926 38.157 38.049 38.248 0 17 10 2 0 0 0 0.0033077 2 20357 20309;20357 125.04 58.581 1 7558200 42620 4303 28341 29056 50061;50062 50062 0.061977429602734446 NPEINKAVL 9 Unmodified _NPEINKAVL_ 0 0 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813316-85813502:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2877807617188 2 499.287474 996.560395 0.846 0.0004224 -0.21792 -0.0001088 0.62809 0.0003136 499.2873563773126 43.054 0.34606 38.289 38.073 38.419 -4.7648 43 22 3 0 0 0 0.0099157 1 26040 26040 80.676 25.173 1 11053000 42621 4303 28341 29056 50063 50063 0.061977429602734446 NPEKRYNVL 9 Unmodified _NPEKRYNVL_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2070922851562 3 378.208495 1131.60366 -0.50901 -0.00019251 -0.096486 -3.6492E-05 -0.6055 -0.000229 378.20835905423183 26.037 0.24149 26.037 25.904 26.145 0 36 11 4 0 0 0 0.34999 1 13340 13340 24.991 12.135 1 12711000 42622 10507 28342 29057 50064 50064 0.04311932737573443 NPEKRYNVL 9 Unmodified _NPEKRYNVL_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8087768554688 2 566.809105 1131.60366 -0.25261 -0.00014318 -0.13438 -7.6166E-05 -0.38699 -0.00021935 566.8091566628607 26.023 0.26213 26.023 25.883 26.145 0 31 12 3 0 0 0 0.0074135 1 13350 13350 110.67 64.975 1 6627100 42623 10507 28342 29057 50065 50065 0.04311932737573443 NPEKRYNVL 9 Unmodified _NPEKRYNVL_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8057861328125 2 566.809105 1131.60366 0.91409 0.00051811 -2.9188 -0.0016544 -2.0047 -0.0011363 567.3089761277361 28.641 0.2524 25.493 25.358 25.61 -3.1482 29 12 3 0 0 0 0.017075 1 15980 15980 66.457 34.151 1 20612000 42624 10507 28342 29057 50066 50066 0.04311932737573443 NPELLVDCEI 10 Unmodified _NPELLVDCEI_ 0 0 0 REV__nc|ENSG00000162929|Q6NSI8-3|SANBR REV__nc|ENSG00000162929|Q6NSI8-3|SANBR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.2214965820312 3 382.190002 1143.54818 1.701 0.0006501 -1.1884 -0.00045419 0.51259 0.00019591 382.1896348013225 41.579 0.55976 36.971 36.817 37.377 -4.6079 66 36 3 0 0 0 0.23227 1 25079 25079 1.7423 0 1 21548000 + 42625 21708 28343 29058 50067 50067 -0.017856615650543972 NPENLATLERY 11 Unmodified _NPENLATLERY_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3335571289062 2 660.333141 1318.65173 0.45705 0.0003018 0.011291 7.456E-06 0.46834 0.00030926 660.3331289717355 47.801 0.39048 47.801 47.623 48.014 0 73 18 5 0 0 0 1.2421E-11 2 26129 26129;26238 128.87 86.914 1 129210000 42626 8793 28344 29059 50068;50069 50068 0.005149618669747724 NPENLATLERY 11 Unmodified _NPENLATLERY_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.3330078125 2 660.333141 1318.65173 0.56213 0.00037119 0.30753 0.00020307 0.86966 0.00057426 660.3334231291539 48.091 0.27272 47.738 47.595 47.868 -0.3526 32 13 3 0 0 0 7.9578E-11 2 25768 25768;25872 118.81 83.881 1 17519000 42627 8793 28344 29059 50070;50071 50070 0.005149618669747724 NPENLATLERY 11 Unmodified _NPENLATLERY_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3402099609375 2 660.333141 1318.65173 NaN NaN NaN NaN NaN NaN NaN 47.822 1 47.783 47.283 48.283 -0.038643 0 0 0 9.9448E-08 1 25776 25776 101.54 51.989 1 42628 8793 28344 29059 50072 50072 0.005149618669747724 NPENLATLERY 11 Unmodified _NPENLATLERY_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3325805664062 2 660.333141 1318.65173 NaN NaN NaN NaN NaN NaN NaN 47.917 1 47.878 47.378 48.378 -0.038643 0 0 0 0.11623 1 25828 25828 48.073 28.711 1 42629 8793 28344 29059 50073 50073 0.005149618669747724 NPENLATLERY 11 Unmodified _NPENLATLERY_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.3333740234375 2 660.333141 1318.65173 0.47949 0.00031662 -0.12156 -8.0272E-05 0.35793 0.00023635 660.3330674331911 53.425 0.49927 47.621 47.35 47.849 -5.8042 103 31 4 0 0 0 2.7481E-63 3 33627 33627;33760;33900 213.63 160.23 1 377190000 42630 8793 28344 29059 50074;50075;50076 50074 0.005149618669747724 NPENQSYLIAY 11 Unmodified _NPENQSYLIAY_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.8147583007812 2 656.314417 1310.61428 0.12451 8.1719E-05 -0.40655 -0.00026682 -0.28204 -0.00018511 656.3140526117575 59.359 0.2729 59.359 59.192 59.465 0 32 11 4 0 0 0 0.0056475 2 33031 33031;33093 74.2 61.959 1 8580400 42631 16039 28345 29060 50077;50078 50077 -0.028601293986639575 NPENQSYLIAY 11 Unmodified _NPENQSYLIAY_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.3138427734375 2 656.314417 1310.61428 0.2025 0.00013291 -1.4929 -0.00097979 -1.2904 -0.00084688 656.3137526665656 60.026 0.23787 59.535 59.392 59.63 -0.49079 16 11 2 0 0 0 0.24216 1 32691 32691 29.841 17.6 1 2467700 42632 16039 28345 29060 50079 50079 -0.028601293986639575 NPENQSYLIAY 11 Unmodified _NPENQSYLIAY_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL;ENSG00000062650|ENST00000298767|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.817138671875 2 656.314417 1310.61428 0.50708 0.0003328 0.079438 5.2136E-05 0.58651 0.00038494 656.3146560883904 66.97 0.31615 60.794 60.646 60.962 -6.1757 30 17 2 0 0 0 0.016317 1 43578 43578 61.09 39.553 1 20142000 42633 16039 28345 29060 50080 50080 -0.028601293986639575 NPENSELKY 9 Unmodified _NPENSELKY_ 0 0 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2611694335938 2 547.261653 1092.50875 -0.46217 -0.00025293 -1.147 -0.00062771 -1.6092 -0.00088063 547.2610306708182 27.498 0.11967 27.498 27.41 27.53 0 10 5 2 0 0 0 0.0085857 1 14155 14155 100.71 60.469 1 4182100 42634 5333 28346 29061 50081 50081 -0.03380045524295383 NPEPNTVSY 9 Unmodified _NPEPNTVSY_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7351379394531 2 510.735271 1019.45599 0.099511 5.0824E-05 0.16361 8.3562E-05 0.26312 0.00013439 510.73524820930675 31.079 0.30203 31.079 30.892 31.194 0 34 14 3 0 0 0 0.011968 1 16146 16146 74.929 48.045 1 10434000 42635 1680 28347 29062 50082 50082 -0.05296003587079667 NPEPNTVSY 9 Unmodified _NPEPNTVSY_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7347106933594 2 510.735271 1019.45599 NaN NaN NaN NaN NaN NaN NaN 31.218 1 31.218 30.718 31.718 0 0 0 0 0.7453 1 16252 16252 7.9102 2.1497 1 42636 1680 28347 29062 50083 50083 -0.05296003587079667 NPEPNTVSY 9 Unmodified _NPEPNTVSY_ 0 0 0 nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 nc|ENSG00000097021|O00154-2|ACOT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7352905273438 2 510.735271 1019.45599 0.35897 0.00018334 0.06087 3.1088E-05 0.41984 0.00021443 510.7353163531691 36.307 0.41134 32.114 31.883 32.295 -4.1928 58 24 3 0 0 0 0.0090524 2 21214 21086;21214 85.642 53.336 1 36758000 42637 1680 28347 29062 50084;50085 50085 -0.05296003587079667 NPEPSLMWY 9 Unmodified _NPEPSLMWY_ 0 0 0 nc|ENSG00000161270|O60500-2|NPHS1;ENSG00000161270|ENST00000378910|NPHS1 nc|ENSG00000161270|O60500-2|NPHS1 nc|ENSG00000161270|O60500-2|NPHS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7562255859375 2 568.757692 1135.50083 NaN NaN NaN NaN NaN NaN NaN 23.161 1 23.161 22.661 23.661 0 0 0 0 0.84369 1 11799 11799 2.3027 0.24298 1 42638 6788 28348 29063 50086 50086 -0.06149896045417336 NPESIYSVF 9 Unmodified _NPESIYSVF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2587280273438 2 528.25584 1054.49713 0.74544 0.00039378 -2.086 -0.001102 -1.3406 -0.00070818 528.2569326313011 73.879 0.3567 73.879 73.688 74.045 0 29 14 3 0 0 0 0.5029 1 41095 41095 7.2892 2.5332 1 721750 42639 10120 28349 29064 50087 50087 -0.02794242547633985 NPESIYSVF 9 Unmodified _NPESIYSVF_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2545166015625 2 528.25584 1054.49713 0.63215 0.00033394 -0.72197 -0.00038139 -0.08982 -4.7448E-05 528.2556064232742 74.373 0.25634 73.897 73.741 73.997 -0.47588 18 10 2 0 0 0 0.28023 1 40690 40690 18.146 2.2992 1 1158900 42640 10120 28349 29064 50088 50088 -0.02794242547633985 NPETSDSFGYD 11 Unmodified _NPETSDSFGYD_ 0 0 0 ENSG00000189401|ENST00000338352|OTUD6A ENSG00000189401|ENST00000338352|OTUD6A ENSG00000189401|ENST00000338352|OTUD6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2420043945312 2 616.241115 1230.46768 0.55585 0.00034254 -0.58387 -0.0003598 -0.028021 -1.7267E-05 616.2410922720851 54.932 0.45914 54.932 54.689 55.149 0 68 19 5 0 0 0 0.69316 1 30446 30446 4.897 0.56777 1 61725000 42641 9749 28350 29065 50089 50089 -0.1383385135438857 NPEVRRAVL 9 Unmodified _NPEVRRAVL_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8765258789062 3 351.876969 1052.60908 -0.39729 -0.0001398 -0.45476 -0.00016002 -0.85205 -0.00029982 351.8767891413598 24.983 0.20174 24.983 24.885 25.087 0 46 26 2 0 0 0 0.50598 1 12764 12764 7.1017 2.9122 1 2028300 42642 2676 28351 29066 50090 50090 0.08487656320039605 NPEVRRAVL 9 Unmodified _NPEVRRAVL_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8772583007812 3 351.876969 1052.60908 1.1262 0.00039628 -1.8856 -0.00066351 -0.75943 -0.00026723 351.87699792774674 27.864 0.55017 24.716 24.568 25.119 -3.1482 48 29 2 0 0 0 0.29507 2 15462 15462;15589 17.443 9.8337 1 27624000 42643 2676 28351 29066 50091;50092 50091 0.08487656320039605 NPEVRRAVL 9 Unmodified _NPEVRRAVL_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3114624023438 2 527.311815 1052.60908 0.43679 0.00023033 -0.20181 -0.00010642 0.23498 0.00012391 527.3115661815033 27.897 0.23838 24.748 24.623 24.861 -3.1482 17 12 2 0 0 0 0.14594 1 15491 15491 24.021 7.0783 1 9718700 42644 2676 28351 29066 50093 50093 0.08487656320039605 NPFCEPVFVRY 11 Carbamidomethyl (C) _NPFC(Carbamidomethyl (C))EPVFVRY_ NPFC(1)EPVFVRY NPFC(76)EPVFVRY 0 1 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.3423461914062 2 714.342455 1426.67036 0.40083 0.00028633 -0.51789 -0.00036995 -0.11706 -8.3618E-05 714.3420153234075 67.574 0.25154 67.592 67.435 67.687 0.018036 31 12 3 0 0 0 0.004841 1 37126 37126 75.571 64.771 1 5434900 42645 4767 28352 29067 50094 50094 485 -0.025911997628554673 NPFCEPVFVRY 11 Carbamidomethyl (C) _NPFC(Carbamidomethyl (C))EPVFVRY_ NPFC(1)EPVFVRY NPFC(65)EPVFVRY 0 1 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20221201_MKP_PDAC_01 4 714.3424072265625 2 714.342455 1426.67036 NaN NaN NaN NaN NaN NaN NaN 77.311 1 71.136 70.636 71.636 -6.1757 0 0 0 0.039465 1 50567 50567 65.474 45.059 1 42646 4767 28352 29067 50095 50095 485 -0.025911997628554673 NPFDEPEAF 9 Unmodified _NPFDEPEAF_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2301025390625 2 533.229822 1064.44509 0.3694 0.00019698 0.91072 0.00048562 1.2801 0.0006826 533.2303516006242 61.434 0.45254 61.434 61.095 61.548 0 38 20 3 0 0 0 0.19127 2 34201 34201;34306 24.021 16.11 1 2425800 42647 3129 28353 29068 50096;50097 50096 -0.08455405961399265 NPFEKGDLY 9 Unmodified _NPFEKGDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2;ENST00000569553.1_1_16:46992902-46993307:-|nuORF ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7615356445312 2 541.761289 1081.50803 0.1514 8.2021E-05 0.38866 0.00021056 0.54006 0.00029258 541.7614666520669 43.334 0.36406 43.334 43.143 43.507 0 46 17 3 0 0 0 0.014417 2 23587 23482;23587 69.105 36.799 1 61799000 42648 1002 28354 29069 50098;50099 50099 -0.029468401733083738 NPFEKGDLY 9 Unmodified _NPFEKGDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2;ENST00000569553.1_1_16:46992902-46993307:-|nuORF ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.76220703125 2 541.761289 1081.50803 -0.041837 -2.2666E-05 -0.074445 -4.0332E-05 -0.11628 -6.2997E-05 541.7611857541702 43.557 0.19392 43.247 43.144 43.338 -0.31039 13 8 2 0 0 0 0.012668 1 23180 23180 72.968 40.182 1 15002000 42649 1002 28354 29069 50100 50100 -0.029468401733083738 NPFEKGDLY 9 Unmodified _NPFEKGDLY_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2;ENST00000569553.1_1_16:46992902-46993307:-|nuORF ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7622680664062 2 541.761289 1081.50803 0.57398 0.00031096 -0.017386 -9.419E-06 0.5566 0.00030154 541.7614965151922 49.17 0.41688 43.774 43.588 44.005 -5.3961 59 27 3 0 0 0 0.0082548 2 30770 30632;30770 96.367 54.527 1 86602000 42650 1002 28354 29069 50101;50102 50102 -0.029468401733083738 NPFFDIDSFYN 11 Unmodified _NPFFDIDSFYN_ 0 0 0 REV__ENSG00000198876|ENST00000361264|DCAF12 REV__ENSG00000198876|ENST00000361264|DCAF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2035522460938 3 460.203187 1377.58773 0.383 0.00017626 -0.10108 -4.6519E-05 0.28191 0.00012974 460.20302064556626 43.984 0.22758 43.984 43.863 44.09 0 30 13 3 0 0 0 0.66428 1 23895 23895 3.8459 0.25323 1 72949000 + 42651 24087 28355 29070 50103 50103 -0.08595818289995805 NPFGSTSGSLF 11 Unmodified _NPFGSTSGSLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2655639648438 2 557.264196 1112.51384 0.75998 0.00042351 1.3993 0.00077978 2.1593 0.0012033 557.2647872079068 71.94 0.39405 71.464 71.266 71.66 -0.47609 43 15 4 0 0 0 0.0079227 2 39327 39327;39423 70.332 41.25 1 10472000 42652 2734 28356 29071 50104;50105 50104 -0.03791741661666492 NPFGSTSGSLF 11 Unmodified _NPFGSTSGSLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.2677001953125 2 557.264196 1112.51384 1.1651 0.00064924 0.96572 0.00053816 2.1308 0.0011874 557.2647140394967 71.439 0.47402 71.478 71.232 71.706 0.039024 68 21 4 0 0 0 5.0416E-09 2 39252 39252;39355 114.2 88.802 1 39434000 42653 2734 28356 29071 50106;50107 50106 -0.03791741661666492 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.2826538085938 2 639.28292 1276.55129 -0.03541 -2.2637E-05 -0.30986 -0.00019809 -0.34527 -0.00022073 639.2829565407869 62.389 0.08699 62.389 62.324 62.411 0 10 7 2 0 0 0 0.16785 1 34806 34806 38.176 27.376 1 4766300 42654 9978 28357 29072 50108 50108 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.2825317382812 2 639.28292 1276.55129 0.22873 0.00014622 -0.71545 -0.00045738 -0.48672 -0.00031115 639.2823896529289 62.951 0.404 62.465 62.285 62.689 -0.48617 67 19 4 0 0 0 2.9632E-07 2 34263 34263;34363 139.14 115.12 1 47454000 42655 9978 28357 29072 50109;50110 50109 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.2821044921875 2 639.28292 1276.55129 0.73921 0.00047257 -0.16276 -0.00010405 0.57646 0.00036852 639.2827622621942 70.251 0.63395 64.075 63.862 64.496 -6.1757 59 35 2 0 0 0 4.814E-06 3 45835 45835;45969;46141 129.77 104.78 1 37121000 42656 9978 28357 29072 50111;50112;50113 50111 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.28271484375 2 639.28292 1276.55129 0.93925 0.00060045 -0.26613 -0.00017013 0.67312 0.00043032 639.2827088774976 71.407 1.4367 65.232 64.461 65.898 -6.1757 123 75 2 0 0 0 7.1344E-10 4 46601 46601;46727;46853;47003 155.03 124.39 1 62326000 42657 9978 28357 29072 50114;50115;50116;50117 50114 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MSMS AL20221201_MKP_PDAC_01 4 639.2831420898438 2 639.28292 1276.55129 NaN NaN NaN NaN NaN NaN NaN 70.846 1 64.67 64.17 65.17 -6.1757 0 0 0 0.0020975 1 46307 46307 103.35 75.725 1 42658 9978 28357 29072 50118 50118 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MSMS AL20221201_MKP_PDAC_01 4 639.2830810546875 2 639.28292 1276.55129 NaN NaN NaN NaN NaN NaN NaN 71.085 1 64.909 64.409 65.409 -6.1757 0 0 0 2.8744E-06 1 46461 46461 122.18 87.777 1 42659 9978 28357 29072 50119 50119 -0.07592650396031786 NPFHWGEVEY 10 Unmodified _NPFHWGEVEY_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 639.28292 1276.55129 0.33792 0.00021603 -0.019183 -1.2263E-05 0.31874 0.00020377 639.2824751621652 62.53 0.2493 62.508 62.393 62.642 -0.021614 0.054231 0.00066868 NaN 139.14 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 7485000 42660 9978 28357 29072 -0.07592650396031786 NPFKEQSFVY 10 Unmodified _NPFKEQSFVY_ 0 0 0 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8093872070312 2 629.808771 1257.60299 0.24316 0.00015315 0.38692 0.00024368 0.63008 0.00039683 629.808838666843 52.056 0.29688 51.622 51.512 51.809 -0.43367 37 14 3 0 0 0 0.0058182 1 28107 28107 96.111 76.854 1 6998400 42661 9194 28358 29073 50120 50120 -0.015509067021412193 NPFKEQSFVY 10 Unmodified _NPFKEQSFVY_ 0 0 0 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3095092773438 2 629.808771 1257.60299 0.18524 0.00011667 0.46293 0.00029156 0.64818 0.00040823 630.3108261013268 51.779 0.20038 51.72 51.592 51.792 -0.058918 15 9 2 0 0 0 0.20962 1 28043 28043 32.786 23.403 1 1359900 42662 9194 28358 29073 50121 50121 -0.015509067021412193 NPFKEQSFVY 10 Unmodified _NPFKEQSFVY_ 0 0 0 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 ENSG00000183778|ENST00000684187|B3GALT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8096313476562 2 629.808771 1257.60299 0.80502 0.00050701 0.1325 8.3453E-05 0.93753 0.00059046 629.8089214663252 57.66 0.29198 51.633 51.461 51.753 -6.0275 25 15 2 0 0 0 0.0022709 1 36835 36835 107.1 80.831 1 28538000 42663 9194 28358 29073 50122 50122 -0.015509067021412193 NPFNMPNLY 9 Oxidation (M) _NPFNM(Oxidation (M))PNLY_ NPFNM(1)PNLY NPFNM(48)PNLY 0 0 1 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2559204101562 2 563.255317 1124.49608 0.48571 0.00027358 -0.21254 -0.00011972 0.27317 0.00015386 563.2554010519866 58.087 0.33363 57.597 57.39 57.724 -0.48974 48 15 4 0 0 0 0.042911 2 31519 31519;31619 48.346 37.522 1 6269100 42664 7765 28359 29074 50123;50124 50123 1322 -0.06118780188171513 NPFNMPNLY 9 Oxidation (M) _NPFNM(Oxidation (M))PNLY_ NPFNM(1)PNLY NPFNM(55)PNLY 0 0 1 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2562255859375 2 563.255317 1124.49608 1.1996 0.00067567 -0.2224 -0.00012527 0.97718 0.0005504 563.2554420158013 57.71 0.37709 57.644 57.438 57.815 -0.066036 38 18 3 0 0 0 0.031062 1 31377 31377 54.774 44.7 1 6484100 42665 7765 28359 29074 50125 50125 1322 -0.06118780188171513 NPFNMPNLY 9 Oxidation (M) _NPFNM(Oxidation (M))PNLY_ NPFNM(1)PNLY NPFNM(97)PNLY 0 0 1 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2554931640625 2 563.255317 1124.49608 1.1761 0.00066243 -0.94978 -0.00053497 0.2263 0.00012746 563.254629415452 58.09 0.3362 58.024 57.834 58.17 -0.066036 32 16 3 0 0 0 0.0083087 1 31632 31632 97.075 70.191 1 5712800 42666 7765 28359 29074 50126 50126 1322 -0.06118780188171513 NPFNMPNLY 9 Unmodified _NPFNMPNLY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.258056640625 2 555.257859 1108.50117 0.4269 0.00023704 0.50366 0.00027966 0.93056 0.0005167 555.2580403013127 77.948 0.29034 78.001 77.843 78.134 0.052444 23 11 3 0 0 0 0.016184 1 43028 43028 67.344 52.506 1 4706200 42667 7765 28359 29075 50127 50127 -0.04874476325539945 NPFNMPNLY 9 Unmodified _NPFNMPNLY_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1 nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7584838867188 2 555.257859 1108.50117 0.57022 0.00031662 -1.4206 -0.00078878 -0.85035 -0.00047216 555.2571771810948 85.66 0.43501 79.484 79.259 79.694 -6.1757 68 24 4 0 0 0 0.0090851 3 56321 56309;56321;56435 85.357 62.208 1 56432000 42668 7765 28359 29075 50128;50129;50130 50129 -0.04874476325539945 NPFPHSHTF 9 Unmodified _NPFPHSHTF_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1722717285156 3 361.838403 1082.49338 0.64084 0.00023188 1.1329 0.00040992 1.7737 0.0006418 361.83881027949326 29.967 0.25267 29.887 29.746 29.999 -0.080429 24 9 4 0 0 0 0.06187 1 15503 15503 38.176 32.392 1 12871000 42669 543 28360 29076 50131 50131 -0.04456867530825548 NPFPHSHTF 9 Unmodified _NPFPHSHTF_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8391418457031 3 361.838403 1082.49338 1.4353 0.00051933 -0.61624 -0.00022298 0.81902 0.00029635 361.8382456193877 33.254 0.31992 29.307 29.121 29.441 -3.9469 38 19 3 0 0 0 0.095405 2 19002 19002;19120 31.268 21.194 1 24242000 42670 543 28360 29076 50132;50133 50132 -0.04456867530825548 NPFPKERAL 9 Unmodified _NPFPKERAL_ 0 0 0 nc|ENSG00000113916|P41182-2|BCL6;ENSG00000113916|ENST00000406870|BCL6 nc|ENSG00000113916|P41182-2|BCL6 nc|ENSG00000113916|P41182-2|BCL6 MSMS AL20221201_MKP_PDAC_01 4 358.2067565917969 3 357.869703 1070.58728 NaN NaN NaN NaN NaN NaN NaN 33.497 1 29.511 29.011 30.011 -3.9853 0 0 0 0.6534 1 19211 19211 10.899 4.2686 1 42671 3009 28361 29077 50134 50134 0.054808515714512396 NPFPVLPGR 9 Unmodified _NPFPVLPGR_ 0 0 0 REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7855224609375 2 498.784902 995.55525 0.77243 0.00038528 1.4603 0.00072839 2.2328 0.0011137 498.78559131363244 80.856 0.3589 80.913 80.703 81.062 0.057587 35 13 3 0 0 0 0.41742 1 44655 44655 11.64 0 1 14804000 + 42672 26738 28362 29078 50135 50135 0.05729483888330833 NPFQEAIVF 9 Unmodified _NPFQEAIVF_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555550.1_1_14:31191003-31191777:+|nuORF;ENST00000556256.1_1_14:31191003-31204812:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7742919921875 2 532.7742 1063.53385 0.43846 0.0002336 0.19408 0.0001034 0.63254 0.000337 532.7744062240205 85.607 0.37614 85.106 85.019 85.395 -0.5015 45 22 3 0 0 0 0.015445 1 46873 46873 68.081 33.679 1 2019700 42673 1606 28363 29079 50136 50136 0.004620540689529662 NPFQEAIVF 9 Unmodified _NPFQEAIVF_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555550.1_1_14:31191003-31191777:+|nuORF;ENST00000556256.1_1_14:31191003-31204812:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MSMS AL20221201_MKP_PDAC_01 4 532.7743530273438 2 532.7742 1063.53385 NaN NaN NaN NaN NaN NaN NaN 94.172 1 87.996 87.496 88.496 -6.1757 0 0 0 0.13831 1 62372 62372 38.176 11.907 1 42674 1606 28363 29079 50137 50137 0.004620540689529662 NPFQFEITF 9 Unmodified _NPFQFEITF_ 0 0 0 ENST00000511766.2_1_6:119215493-119222091:+|nuORF;ENSG00000111875|ENST00000229595|ASF1A ENST00000511766.2_1_6:119215493-119222091:+|nuORF ENST00000511766.2_1_6:119215493-119222091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.780029296875 2 571.779482 1141.54441 4.3037 0.0024608 -1.4203 -0.00081211 2.8834 0.0016487 571.7786882989931 99.082 0.24144 99.054 98.948 99.189 -0.028282 20 8 4 0 0 0 0.00856 1 55031 55031 100.37 65.97 1 15904000 42675 2840 28364 29080 50138 50138 -0.02069963276630915 NPFQPGQEQL 10 Unmodified _NPFQPGQEQL_ 0 0 0 ENST00000467539.1_1_2:27325392-27327225:-|nuORF;nc|ENSG00000138028|Q99674-2|CGREF1;ENSG00000138028|ENST00000402394|CGREF1 ENST00000467539.1_1_2:27325392-27327225:-|nuORF ENST00000467539.1_1_2:27325392-27327225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2848510742188 2 579.28292 1156.55129 -0.33483 -0.00019396 1.2002 0.00069523 0.86533 0.00050127 579.2844662389493 35.043 0.24656 35.043 34.9 35.146 0 28 12 3 0 0 0 0.29752 1 18493 18493 27.629 1.3607 1 4853200 42676 5003 28365 29081 50139 50139 -0.020726503960531772 NPFQYMAMW 9 Unmodified _NPFQYMAMW_ 0 0 0 ENST00000320650.8_1_4:142557787-142577401:+|nuORF ENST00000320650.8_1_4:142557787-142577401:+|nuORF ENST00000320650.8_1_4:142557787-142577401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2555541992188 2 594.254262 1186.49397 0.97079 0.0005769 0.95174 0.00056557 1.9225 0.0011425 594.2548042647437 80.388 0.27843 79.898 79.755 80.034 -0.48932 18 10 2 0 0 0 0.55775 1 44041 44041 3.9444 0.3479 1 693710 42677 11766 28366 29082 50140 50140 -0.09181532197635534 NPFSLGESF 9 Unmodified _NPFSLGESF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2354736328125 2 499.234907 996.455261 0.55501 0.00027708 0.90285 0.00045074 1.4579 0.00072782 499.2352217943402 74.114 0.31265 73.638 73.504 73.817 -0.47588 28 12 3 0 0 0 0.39863 2 40534 40534;40635 12.532 3.1841 1 1418400 42678 5988 28367 29083 50141;50142 50141 -0.04310798236133451 NPFSLGESF 9 Unmodified _NPFSLGESF_ 0 0 0 ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-3|ARFGAP2;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000149182|ENST00000524782|ARFGAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.7896728515625 2 499.234907 996.455261 1.2326 0.00061538 -0.24544 -0.00012253 0.9872 0.00049285 499.23454735948684 81.621 0.37108 75.445 75.247 75.618 -6.1757 26 20 2 0 0 0 0.10661 1 53538 53538 24.021 10.115 1 8778200 42679 5988 28367 29083 50143 50143 -0.04310798236133451 NPGFVYDDR 9 Unmodified _NPGFVYDDR_ 0 0 0 REV__ENSG00000184156|ENST00000388996|KCNQ3 REV__ENSG00000184156|ENST00000388996|KCNQ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7520751953125 2 541.748713 1081.48287 -0.33094 -0.00017928 2.3194 0.0012565 1.9885 0.0010773 542.2512724094656 19.335 0.42271 19.335 19.11 19.533 0 79 33 4 0 0 0 0.59532 1 9574 9574 1.6526 0.17072 1 2474500 + 42680 23399 28368 29084 50144 50144 -0.05460894975908559 NPGHCGDRATC 11 Unmodified _NPGHCGDRATC_ 0 0 0 ENST00000480549.5_1_1:36787327-36788053:+|nuORF;ENST00000474766.1_1_1:36787303-36788053:+|nuORF ENST00000480549.5_1_1:36787327-36788053:+|nuORF ENST00000480549.5_1_1:36787327-36788053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7294921875 2 565.726932 1129.43931 0.42312 0.00023937 1.8288 0.0010346 2.2519 0.001274 566.2294930595464 76.575 0.33028 76.625 76.469 76.8 0.05011 23 13 2 0 0 0 0.65846 1 42246 42246 8.1555 1.4324 1 4286200 42681 13943 28369 29085 50145 50145 -0.12023151016319389 NPGNPHNVY 9 Unmodified _NPGNPHNVY_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000587642.5_1_17:73842817-73843099:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2375183105469 2 506.235773 1010.45699 1.1302 0.00057216 -0.38901 -0.00019693 0.74121 0.00037523 506.23569269393863 21.023 0.32161 18.33 18.167 18.489 -2.693 32 17 2 0 0 0 0.0067112 2 11197 11197;11306 112.59 88.573 1 8794400 42682 4413 28370 29086 50146;50147 50146 -0.047817444275324306 NPGPADLTRLL 11 Unmodified _NPGPADLTRLL_ 0 0 0 REV__ENSG00000112659|ENST00000252050|CUL9 REV__ENSG00000112659|ENST00000252050|CUL9 MSMS AL20221201_MKP_PDAC_01 4 389.5560913085938 3 389.555784 1165.64552 NaN NaN NaN NaN NaN NaN NaN 49.564 1 44.033 43.533 44.533 -5.5305 0 0 0 0.79635 1 30976 30976 6.6235 1.2207 1 + 42683 18828 28371 29087 50148 50148 0.06932488426082273 NPHDIRLLL 9 Unmodified _NPHDIRLLL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.216796875 3 364.217102 1089.62948 0.39062 0.00014227 0.20315 7.3991E-05 0.59377 0.00021626 364.2171504731746 55.382 0.31588 54.904 54.733 55.048 -0.47798 25 14 2 0 0 0 0.52067 1 30012 30012 14.405 0 1 3372100 42684 3224 28372 29088 50149 50149 0.08824826979844147 NPHDSFAHY 9 Unmodified _NPHDSFAHY_ 0 0 0 nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;ENST00000562331.5_1_16:74983814-75030914:-|nuORF nc|ENSG00000103091|Q6PJI9-2|WDR59 nc|ENSG00000103091|Q6PJI9-2|WDR59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2359008789062 2 544.23323 1086.45191 -0.20197 -0.00010992 3.3079 0.0018003 3.106 0.0016904 544.2361381187895 22.65 0.08238 22.65 22.611 22.694 0 5 3 2 0 0 0 0.55144 1 11539 11539 4.3292 0.73274 1 401750 42685 2102 28373 29089 50150 50150 -0.08786048290130566 NPHEVQPAY 9 Unmodified _NPHEVQPAY_ 0 0 0 ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1;ENST00000427525.2_1_15:85177687-85177801:+|nuORF ENST00000476717.1_1_1:231502159-231556008:-|nuORF ENST00000476717.1_1_1:231502159-231556008:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.75 2 527.751256 1053.48796 NaN NaN NaN NaN NaN NaN NaN 25.83 1 22.879 22.379 23.379 -2.9511 0 0 0 0.13463 1 14173 14173 34.402 9.0024 1 42686 4739 28374 29090 50151 50151 -0.03664591113283677 NPHEVQPSY 9 Unmodified _NPHEVQPSY_ 0 0 0 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7483520507812 2 535.748713 1069.48287 0.048823 2.6157E-05 0.03202 1.7155E-05 0.080843 4.3311E-05 535.7487798777128 24.878 0.29193 21.995 21.852 22.144 -2.8831 32 19 2 0 0 0 0.03568 2 13529 13529;13639 52.268 25.385 1 6430000 42687 4147 28375 29091 50152;50153 50152 -0.04908894975892508 NPHFGSHRY 9 Unmodified _NPHFGSHRY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.1780700683594 3 372.177418 1113.51043 0.7268 0.0002705 0.5371 0.0001999 1.2639 0.0004704 372.177600968563 16.333 0.25685 13.776 13.65 13.907 -2.557 107 32 4 0 0 0 0.13231 1 8419 8419 22.775 19.455 1 69394000 42688 4745 28376 29092 50154 50154 -0.04178946925003402 NPHFGSHRY 9 Unmodified _NPHFGSHRY_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7630615234375 2 557.762489 1113.51043 0.29421 0.0001641 0.69163 0.00038576 0.98583 0.00054986 557.7629664682198 16.346 0.13882 13.789 13.71 13.849 -2.557 28 17 2 0 0 0 0.069655 1 8439 8439 40.239 22.093 1 2414500 42689 4745 28376 29092 50155 50155 -0.04178946925003402 NPHGNQVNRC 10 Unmodified _NPHGNQVNRC_ 0 0 0 ENST00000566733.2_1_6:3909509-3909881:-|nuORF ENST00000566733.2_1_6:3909509-3909881:-|nuORF ENST00000566733.2_1_6:3909509-3909881:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.263916015625 2 569.762163 1137.50977 0.44682 0.00025458 -0.27489 -0.00015662 0.17193 9.7962E-05 569.7622659448492 38.626 0.38628 34.258 34.03 34.416 -4.3689 60 24 3 0 0 0 0.52888 1 22717 22717 14.838 0 1 40963000 42690 15423 28377 29093 50156 50156 -0.05348109636361187 NPHIIFAFY 9 Unmodified _NPHIIFAFY_ 0 0 0 ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.29296875 2 561.292559 1120.57057 0.58915 0.00033069 -0.14305 -8.0291E-05 0.44611 0.0002504 561.2923722676059 79.827 0.32748 79.884 79.7 80.027 0.056877 32 12 3 0 0 0 0.016184 1 44090 44090 67.344 38.857 1 7392700 42691 4798 28378 29094 50157 50157 0.01510350685521189 NPHIIFAFY 9 Unmodified _NPHIIFAFY_ 0 0 0 ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 ENSG00000136197|ENST00000350427|C7orf25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.3406372070312 2 561.292559 1120.57057 1.4119 0.00079249 1.2966 0.00072779 2.7085 0.0015203 561.2931941681412 97.995 0.11556 91.82 91.731 91.847 -6.1757 10 6 2 0 0 0 0.17718 1 64919 64919 20.454 4.6064 1 17850000 42692 4798 28378 29094 50158 50158 0.01510350685521189 NPHLQTFTF 9 Unmodified _NPHLQTFTF_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7776489257812 2 552.777274 1103.53999 0.49495 0.0002736 -0.1636 -9.0434E-05 0.33136 0.00018317 552.7770006852425 59.053 0.30849 58.992 58.839 59.147 -0.060719 35 14 3 0 0 0 0.08691 2 32137 32137;32237 36.127 11.453 1 7228900 42693 5174 28379 29095 50159;50160 50159 -0.00763427699530439 NPHNDIQAF 9 Unmodified _NPHNDIQAF_ 0 0 0 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000116254|ENST00000262450|CHD5 nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2485961914062 2 528.24888 1054.48321 -0.21959 -0.000116 0.062654 3.3097E-05 -0.15694 -8.2902E-05 528.249039015388 33.759 0.29301 33.759 33.633 33.926 0 38 14 4 0 0 0 0.03568 1 17712 17712 52.268 39.737 1 16861000 42694 7938;2803 28380 29096 50161 50161 -0.04185475256031168 NPHNDIQAF 9 Unmodified _NPHNDIQAF_ 0 0 0 nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;ENSG00000116254|ENST00000262450|CHD5 nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000170004|Q12873-2|CHD3 nc|ENSG00000170004|Q12873-2|CHD3 MSMS AL20221201_MKP_PDAC_01 4 528.2490234375 2 528.24888 1054.48321 NaN NaN NaN NaN NaN NaN NaN 37.666 1 33.297 32.797 33.797 -4.3689 0 0 0 0.022863 1 22133 22133 74.929 34.972 1 42695 7938;2803 28380 29096 50162 50162 -0.04185475256031168 NPHPTIKMEM 10 Oxidation (M) _NPHPTIKM(Oxidation (M))EM_ NPHPTIKM(0.982)EM(0.018) NPHPTIKM(17)EM(-17) 0 0 1 ENSG00000176890|ENST00000323274|TYMS;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2880249023438 2 607.288834 1212.56311 -0.043073 -2.6158E-05 0.31924 0.00019387 0.27617 0.00016771 607.2886429759867 24.619 0.19949 21.736 21.617 21.817 -2.8831 15 10 2 0 0 0 0.13008 1 13402 13402 42.312 29.27 2 2116000 42696 8629 28381 29097 50163 50163 1458 -0.034664929687551194 NPHQGYRLL 9 Unmodified _NPHQGYRLL_ 0 0 0 REV__nc|ENSG00000117676|Q15418-3|RPS6KA1 REV__nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5341186523438 3 366.533202 1096.57778 0.75328 0.0002761 0.90848 0.00033299 1.6618 0.00060909 366.53322410668517 23.069 0.14333 20.291 20.203 20.346 -2.7784 12 8 2 0 0 0 0.41742 1 12480 12480 7.609 1.8255 1 4313800 + 42697 19120 28382 29098 50164 50164 0.03335083285946894 NPHQQYSVY 9 Unmodified _NPHQQYSVY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7632446289062 2 568.261988 1134.50942 -0.33174 -0.00018851 0.40219 0.00022855 0.070447 4.0032E-05 568.2625705044422 26.86 0.45597 26.86 26.699 27.155 0 70 21 6 0 0 0 0.085319 1 13781 13781 39.957 5.8549 1 11044000 42698 6810 28383 29099 50165 50165 -0.052452060845553206 NPHQQYSVY 9 Unmodified _NPHQQYSVY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2618408203125 2 568.261988 1134.50942 0.69032 0.00039228 -0.44471 -0.00025271 0.24561 0.00013957 568.2615027771831 29.755 0.25632 26.453 26.37 26.626 -3.3016 20 12 2 0 0 0 0.021948 1 16737 16737 58.679 30.192 1 27146000 42699 6810 28383 29099 50166 50166 -0.052452060845553206 NPHREPAPML 10 Unmodified _NPHREPAPML_ 0 0 0 REV__ENST00000503539.5_1_4:79570833-79602009:+|nuORF REV__ENST00000503539.5_1_4:79570833-79602009:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.2960815429688 2 581.295307 1160.57606 NaN NaN NaN NaN NaN NaN NaN 102.42 1 96.243 95.743 96.743 -6.1757 0 0 0 0.94985 1 68731 68731 3.2813 0 1 + 42700 28040 28384 29100 50167 50167 0.0021970620568936283 NPHSQGLVTF 10 Unmodified _NPHSQGLVTF_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2799072265625 2 550.28018 1098.54581 1.0379 0.00057116 -0.81807 -0.00045017 0.21987 0.00012099 550.279358037426 46.23 0.26131 46.23 46.108 46.369 0 19 12 2 0 0 0 0.06987 1 25231 25231 53.404 25.775 1 8453600 42701 7636 28385 29101 50168 50168 0.0004767081213685742 NPHSQGLVTF 10 Unmodified _NPHSQGLVTF_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2799072265625 2 550.28018 1098.54581 0.57986 0.00031908 0.12354 6.7983E-05 0.7034 0.00038707 550.2796955024086 46.455 0.36851 46.118 45.901 46.27 -0.33664 57 18 4 0 0 0 0.0057332 3 24824 24805;24824;24926 96.367 52.508 1 50315000 42702 7636 28385 29101 50169;50170;50171 50170 0.0004767081213685742 NPHSQGLVTF 10 Unmodified _NPHSQGLVTF_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2806396484375 2 550.28018 1098.54581 0.93584 0.00051498 -0.41152 -0.00022645 0.52433 0.00028853 550.2797978179772 51.165 0.37655 45.516 45.28 45.656 -5.649 56 22 3 0 0 0 0.035244 2 32062 32062;32192 65.474 23.391 1 119590000 42703 7636 28385 29101 50172;50173 50172 0.0004767081213685742 NPHSQGLVTF 10 Unmodified _NPHSQGLVTF_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 550.28018 1098.54581 0.71347 0.00039261 0.19906 0.00010954 0.91253 0.00050215 550.281130405693 46.226 0.16499 46.192 46.059 46.224 -0.033417 0.012458 0.00040817 NaN 96.367 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1788100 42704 7636 28385 29101 0.0004767081213685742 NPHTDHWSF 9 Unmodified _NPHTDHWSF_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000491112.1_1_1:185269520-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8331298828125 3 380.833429 1139.47846 -0.33687 -0.00012829 0.62688 0.00023874 0.29001 0.00011045 380.83365730144584 36.823 0.23648 36.574 36.471 36.708 -0.2497 17 10 2 0 0 0 0.5029 1 19348 19348 7.609 2.7119 1 4235000 42705 3240 28386 29102 50174 50174 -0.08570359398800065 NPHTDHWSF 9 Unmodified _NPHTDHWSF_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000491112.1_1_1:185269520-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.833429 1139.47846 0.55506 0.00021138 -0.0418 -1.5919E-05 0.51326 0.00019547 380.8335226684665 36.602 0.26807 36.602 36.507 36.775 0 0.014285 -0.00037588 NaN 7.609 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3068700 42706 3240 28386 29102 -0.08570359398800065 NPIDHVSF 8 Unmodified _NPIDHVSF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.729736328125 2 464.729792 927.445031 1.1672 0.00054243 -0.42328 -0.00019671 0.74391 0.00034572 464.7294753214393 46.062 0.2927 46.062 45.918 46.21 0 32 13 4 0 0 0 0.63229 1 25156 25156 23.148 2.2772 1 4910400 42707 1951 28387 29103 50175 50175 -0.02159361170708962 NPIDHVSF 8 Unmodified _NPIDHVSF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7297668457031 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 46.411 1 46.074 45.574 46.574 -0.33664 0 0 0 0.9192 1 24840 24840 16.942 3.4344 1 42708 1951 28387 29103 50176 50176 -0.02159361170708962 NPIDHVSF 8 Unmodified _NPIDHVSF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 464.729792 927.445031 0.39957 0.00018569 -0.27169 -0.00012626 0.12788 5.943E-05 464.72964290937017 46.368 0.15256 46.032 45.92 46.073 -0.33664 -0.015391 0.00011791 NaN 23.148 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2819600 42709 1951 28387 29103 -0.02159361170708962 NPIDHVSFY 9 Unmodified _NPIDHVSFY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2622680664062 2 546.261456 1090.50836 0.016623 9.0807E-06 -0.39366 -0.00021504 -0.37704 -0.00020596 546.2611309604778 51.874 0.68792 51.874 51.665 52.353 0 66 30 4 0 0 0 0.0082475 1 28615 28615 92.653 44.307 1 64000000 42710 1951 28388 29104 50177 50177 -0.03327420453456398 NPIDHVSFY 9 Unmodified _NPIDHVSFY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2616577148438 2 546.261456 1090.50836 0.3655 0.00019966 -0.02815 -1.5378E-05 0.33735 0.00018428 546.2613672709982 52.447 0.42797 52.013 51.809 52.237 -0.43367 87 21 5 0 0 0 0.013041 2 28275 28275;28381 71.922 48.774 1 226860000 42711 1951 28388 29104 50178;50179 50178 -0.03327420453456398 NPIDHVSFY 9 Unmodified _NPIDHVSFY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2632446289062 2 546.261456 1090.50836 0.44439 0.00024275 2.6934 0.0014713 3.1378 0.0017141 546.2639347134557 52.086 0.39643 52.027 51.814 52.21 -0.058918 48 18 4 0 0 0 0.032796 1 28217 28217 53.833 25.346 1 11850000 42712 1951 28388 29104 50180 50180 -0.03327420453456398 NPIDHVSFY 9 Unmodified _NPIDHVSFY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2619018554688 2 546.261456 1090.50836 1.3637 0.00074491 -0.27455 -0.00014998 1.0891 0.00059493 546.2612520199617 58.73 0.7309 52.656 52.299 53.03 -6.0745 148 40 5 0 0 0 0.0038489 3 37666 37531;37666;37797 122.18 64.708 1 763800000 42713 1951 28388 29104 50181;50182;50183 50182 -0.03327420453456398 NPIDHVSFY 9 Unmodified _NPIDHVSFY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.261456 1090.50836 0.19706 0.00010764 -2.1613 -0.0011807 -1.9643 -0.001073 546.261021183016 52.845 0.17768 52.393 52.318 52.496 -0.45173 -0.13125 -0.0020419 NaN 122.18 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 890170 42714 1951 28388 29104 -0.03327420453456398 NPIDVDPFTY 10 Unmodified _NPIDVDPFTY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.7799682617188 2 590.779679 1179.5448 -0.015426 -9.1135E-06 1.5876 0.00093795 1.5722 0.00092883 590.7803250917797 78.695 0.35948 78.209 78.012 78.372 -0.48596 32 13 3 0 0 0 0.043225 3 43143 43009;43037;43143 61.602 37.581 1 4043000 42715 5288 28389 29105 50184;50185;50186 50186 -0.03778588347427103 NPIDVDPFTY 10 Unmodified _NPIDVDPFTY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7802124023438 2 590.779679 1179.5448 1.0738 0.00063437 0.31322 0.00018504 1.387 0.00081941 590.7796585374363 86.38 0.54921 80.204 79.924 80.473 -6.1757 75 29 3 0 0 0 0.025861 2 56938 56806;56938 70.332 54.485 1 64202000 42716 5288 28389 29105 50187;50188 50188 -0.03778588347427103 NPIEDDLIF 9 Unmodified _NPIEDDLIF_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2679443359375 2 538.268947 1074.52334 0.25508 0.0001373 -0.70144 -0.00037756 -0.44636 -0.00024026 538.2682986777427 84.049 0.43168 84.049 83.84 84.272 0 62 22 3 0 0 0 0.0090948 2 46632 46533;46632 85.272 33.004 1 5525700 42717 2662 28390 29106 50189;50190 50190 -0.010939733761460957 NPIEDELVF 9 Unmodified _NPIEDELVF_ 0 0 0 nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.269775390625 2 538.268947 1074.52334 0.25392 0.00013668 0.052306 2.8155E-05 0.30623 0.00016483 538.2691509233304 79.055 0.43122 79.055 78.851 79.282 0 63 19 4 0 0 0 0.011968 2 43858 43858;43962 74.929 42.624 1 6798100 42718 2705 28391 29107 50191;50192 50191 -0.010939733761233583 NPIEEISVL 9 Unmodified _NPIEEISVL_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2789306640625 2 507.279315 1012.54408 0.40314 0.00020451 -0.69439 -0.00035225 -0.29125 -0.00014775 507.2789696329887 76.035 0.45908 76.035 75.812 76.271 0 54 20 3 0 0 0 0.011968 2 42308 42209;42308 74.929 6.8483 1 14257000 42719 3003 28392 29108 50193;50194 50194 0.03830617003529824 NPIEEISVL 9 Unmodified _NPIEEISVL_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2789611816406 2 507.279315 1012.54408 -0.30775 -0.00015612 -0.17041 -8.6443E-05 -0.47816 -0.00024256 507.2788865580596 76.501 0.4286 76.021 75.787 76.216 -0.47945 36 26 2 0 0 0 0.46501 1 41954 41954 9.3831 3.1773 1 2342400 42720 3003 28392 29108 50195 50195 0.03830617003529824 NPIEEISVL 9 Unmodified _NPIEEISVL_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1013.551879882812 1 1013.55135 1012.54408 0.58248 0.00059038 0.14935 0.00015137 0.73183 0.00074175 1013.5516155958494 84.205 0.44434 78.029 77.798 78.242 -6.1757 46 24 2 0 0 0 0.0004779 1 55305 55305 144.35 28.658 1 15074000 42721 3003 28392 29108 50196 50196 0.03830617003529824 NPIEFLASY 9 Unmodified _NPIEFLASY_ 0 0 0 ENSG00000162961|ENST00000342166|DPY30 ENSG00000162961|ENST00000342166|DPY30 ENSG00000162961|ENST00000342166|DPY30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2665405273438 2 527.266207 1052.51786 0.49399 0.00026046 0.1826 9.6278E-05 0.67659 0.00035674 527.2673020203363 82.674 0.46472 82.176 81.866 82.331 -0.49751 39 19 3 0 0 0 0.039985 2 45230 45230;45327 49.933 24.534 1 2169400 42722 6934 28393 29109 50197;50198 50197 -0.006296521679587386 NPIGILTTSY 10 Unmodified _NPIGILTTSY_ 0 0 0 ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2930297851562 2 539.792589 1077.57063 0.20222 0.00010916 -0.013377 -7.2209E-06 0.18884 0.00010194 539.7926387852737 70.762 0.2863 70.284 70.148 70.434 -0.47736 24 14 2 0 0 0 0.074936 1 38689 38689 52.268 31.815 1 2337200 42723 9875 28394 29110 50199 50199 0.03494305894855643 NPIGILTTSY 10 Unmodified _NPIGILTTSY_ 0 0 0 ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 ENSG00000196850|ENST00000354300|PPTC7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.792589 1077.57063 0.57314 0.00030938 3.5253 0.0019029 4.0985 0.0022123 540.2969038799998 70.287 0.27135 70.322 70.173 70.444 0.035507 0.019009 0.0035472 NaN 52.268 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1701000 42724 9875 28394 29110 0.03494305894855643 NPIKVDPTM 9 Oxidation (M) _NPIKVDPTM(Oxidation (M))_ NPIKVDPTM(1) NPIKVDPTM(93) 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7669677734375 2 515.765517 1029.51648 -0.5505 -0.00028393 -1.4798 -0.00076323 -2.0303 -0.0010472 515.7651211102655 28.008 0.22488 28.008 27.865 28.09 0 25 14 3 0 0 0 0.0082475 1 14407 14407 92.653 65.77 1 7272200 42725 8296;16388 28395 29111 50200 50200 1403 0.0029039047165042575 NPILRKKF 8 Unmodified _NPILRKKF_ 0 0 0 REV__ENST00000309720.9_1_X:119393056-119393188:-|nuORF REV__ENST00000309720.9_1_X:119393056-119393188:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3236083984375 2 508.324194 1014.63383 NaN NaN NaN NaN NaN NaN NaN 87.774 1 87.827 87.327 88.327 0.053352 0 0 0 0.97444 1 48819 48819 2.5775 1.7838 1 + 42726 25408 28396 29112 50201 50201 0.1271033619341324 NPINEPLFY 9 Unmodified _NPINEPLFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7742919921875 2 553.779482 1105.54441 0.11759 6.5121E-05 -0.63871 -0.00035371 -0.52112 -0.00028858 553.7789464582779 56.298 0.55787 56.298 56.007 56.564 0 43 25 2 0 0 0 0.12424 1 31217 31217 30.637 0.41173 1 63529000 42727 1378 28397 29113 50202 50202 -0.004139632766282375 NPINEPLFY 9 Unmodified _NPINEPLFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7793579101562 2 553.779482 1105.54441 0.59263 0.00032818 0.18909 0.00010472 0.78172 0.0004329 553.7793406679178 72.599 0.45718 72.599 72.362 72.819 0 65 20 4 0 0 0 0.0082661 2 40451 40352;40451 92.491 69.755 1 19774000 42728 1378 28397 29113 50203;50204 50204 -0.004139632766282375 NPINEPLFY 9 Unmodified _NPINEPLFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7802734375 2 553.779482 1105.54441 0.86026 0.0004764 0.28228 0.00015632 1.1425 0.00063271 553.7796739067646 73.068 0.43996 72.593 72.341 72.781 -0.47588 56 19 4 0 0 0 0.008678 2 40001 39909;40001 88.904 64.23 1 9463800 42729 1378 28397 29113 50205;50206 50206 -0.004139632766282375 NPINEPLFY 9 Unmodified _NPINEPLFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7799072265625 2 553.779482 1105.54441 0.98596 0.000546 0.53638 0.00029703 1.5223 0.00084304 553.7799412807407 80.166 0.86729 73.99 73.482 74.35 -6.1757 119 51 3 0 0 0 0.06294 1 52591 52591 41.84 27.001 1 75910000 42730 1378 28397 29113 50207 50207 -0.004139632766282375 NPINSATSI 9 Unmodified _NPINSATSI_ 0 0 0 nc|ENSG00000182552|Q6NW29-2|RWDD4;ENST00000426392.1_1_7:39894095-39894470:-|nuORF;ENSG00000182552|ENST00000326397|RWDD4 nc|ENSG00000182552|Q6NW29-2|RWDD4 nc|ENSG00000182552|Q6NW29-2|RWDD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7401733398438 2 458.740357 915.46616 0.13343 6.121E-05 0.3135 0.00014382 0.44693 0.00020503 458.74045674379636 41.776 0.29253 41.776 41.589 41.881 0 25 14 2 0 0 0 0.0082281 1 22514 22514 92.822 40.554 1 11828000 42731 9066 28398 29114 50208 50208 0.005046041381433497 NPINSATSI 9 Unmodified _NPINSATSI_ 0 0 0 nc|ENSG00000182552|Q6NW29-2|RWDD4;ENST00000426392.1_1_7:39894095-39894470:-|nuORF;ENSG00000182552|ENST00000326397|RWDD4 nc|ENSG00000182552|Q6NW29-2|RWDD4 nc|ENSG00000182552|Q6NW29-2|RWDD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7405700683594 2 458.740357 915.46616 0.76638 0.00035157 0.48189 0.00022106 1.2483 0.00057263 458.74051867109574 48.88 0.25293 43.484 43.287 43.54 -5.3961 21 14 2 0 0 0 0.009483 1 30382 30382 81.89 39.796 1 18407000 42732 9066 28398 29114 50209 50209 0.005046041381433497 NPINTFTKF 9 Unmodified _NPINTFTKF_ 0 0 0 ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF ENSG00000175220|ENST00000311956|ARHGAP1 ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.286865234375 2 541.287474 1080.5604 -0.4766 -0.00025798 0.26104 0.0001413 -0.21556 -0.00011668 541.2876498354055 56.059 0.31388 55.99 55.801 56.115 -0.068737 24 16 2 0 0 0 0.010362 1 30416 30416 96.367 32.406 1 10510000 42733 8498 28399 29115 50210 50210 0.023337429602861448 NPIRFFNRF 9 Unmodified _NPIRFFNRF_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2210998535156 3 404.220847 1209.64071 1.2535 0.00050671 -0.47751 -0.00019302 0.77603 0.00031369 404.22053372895044 89.015 0.34964 82.839 82.653 83.003 -6.1757 29 19 2 0 0 0 0.12424 1 58758 58758 22.658 18.469 1 9658600 42734 4782 28400 29116 50211 50211 0.04427649073977591 NPISGLGGTKY 11 Unmodified _NPISGLGGTKY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7963256835938 2 553.795663 1105.57677 0.74834 0.00041443 0.38071 0.00021083 1.129 0.00062526 553.795652380409 40.462 0.29552 40.165 40.008 40.303 -0.29716 36 13 3 0 0 0 0.00041721 1 21358 21358 89.609 30.93 1 12940000 42735 3147 28401 29117 50212 50212 0.028208241263882883 NPISGLGGTKY 11 Unmodified _NPISGLGGTKY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.296875 2 553.795663 1105.57677 0.50081 0.00027734 -0.23755 -0.00013156 0.26326 0.00014579 553.795171052181 40.145 0.20798 40.15 40.048 40.256 0.0050583 16 9 2 0 0 0 0.13335 1 21415 21415 38.615 7.9782 1 1541800 42736 3147 28401 29117 50213 50213 0.028208241263882883 NPISGLGGTKY 11 Unmodified _NPISGLGGTKY_ 0 0 0 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 ENSG00000115641|ENST00000530340|FHL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.795166015625 2 553.795663 1105.57677 0.53051 0.0002938 -0.047827 -2.6486E-05 0.48269 0.00026731 553.795454745776 45.443 0.38148 40.488 40.332 40.713 -4.9549 62 25 3 0 0 0 0.00041721 3 27824 27775;27824;27977 89.609 30.93 1 56629000 42737 3147 28401 29117 50214;50215;50216 50215 0.028208241263882883 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2661437988281 2 503.266207 1004.51786 0.47127 0.00023717 1.854 0.00093306 2.3253 0.0011702 503.2659738801985 76.096 0.67684 76.096 75.791 76.468 0 97 29 5 0 0 0 0.0094097 3 42320 42215;42320;42423 82.529 31.936 1 31290000 42738 6746 28402 29118 50217;50218;50219 50218 0.01578347832048621 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2659912109375 2 503.266207 1004.51786 -0.40893 -0.0002058 0.4744 0.00023875 0.065471 3.2949E-05 503.26619381829767 76.555 0.86626 76.076 75.74 76.606 -0.47945 190 46 6 0 0 0 0.0085164 3 41895 41796;41895;41998 99.799 47.531 1 136020000 42739 6746 28402 29118 50220;50221;50222 50221 0.01578347832048621 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1005.525329589844 1 1005.52514 1004.51786 -0.11316 -0.00011378 1.1229 0.0011291 1.0097 0.0010153 1005.524289226993 76.587 0.57853 76.107 75.835 76.413 -0.47945 105 33 5 0 0 0 0.20207 1 42062 42062 11.495 5.2889 1 22101000 42740 6746 28402 29118 50223 50223 0.01578347832048621 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2662353515625 2 503.266207 1004.51786 0.21755 0.00010949 -0.39822 -0.00020041 -0.18067 -9.0927E-05 503.2660564923941 76.068 0.48817 76.116 75.864 76.352 0.047943 43 20 3 0 0 0 0.011671 2 41898 41898;42001 75.761 33.921 1 17151000 42741 6746 28402 29118 50224;50225 50224 0.01578347832048621 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2665710449219 2 503.266207 1004.51786 0.67366 0.00033903 0.67173 0.00033806 1.3454 0.00067709 503.2661881644163 84.286 0.92021 78.111 77.662 78.582 -6.1757 184 51 5 0 0 0 0.0082353 4 55362 55232;55362;55482;55608 96.111 39.934 1 646990000 42742 6746 28402 29118 50226;50227;50228;50229 50227 0.01578347832048621 NPISGLLEY 9 Unmodified _NPISGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000463920.5_1_1:154573515-154574721:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1005.52514 1004.51786 -0.12674 -0.00012744 -0.52074 -0.00052361 -0.64748 -0.00065106 1005.5244801206692 76.076 0.42072 76.076 75.874 76.294 0 -0.015679 -0.00078501 NaN 11.495 33 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5683600 42743 6746 28402 29118 0.01578347832048621 NPISGPVESQ 10 Unmodified _NPISGPVESQ_ 0 0 0 REV__nc|ENSG00000076242|P40692-2|MLH1 REV__nc|ENSG00000076242|P40692-2|MLH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2569580078125 2 514.256371 1026.49819 -0.053086 -2.73E-05 1.5142 0.00077868 1.4611 0.00075138 514.2569783803357 76.566 0.60136 76.087 75.812 76.413 -0.47945 81 34 3 0 0 0 0.11654 1 41953 41953 43.982 4.0321 1 9681000 + 42744 17585 28403 29119 50230 50230 -0.014000281787048152 NPISGPVESQ 10 Unmodified _NPISGPVESQ_ 0 0 0 REV__nc|ENSG00000076242|P40692-2|MLH1 REV__nc|ENSG00000076242|P40692-2|MLH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.256371 1026.49819 0.22346 0.00011491 1.3524 0.00069547 1.5758 0.00081038 514.2571499777818 76.059 0.35381 76.059 75.894 76.248 0 -0.013596 -7.6436E-05 NaN 43.982 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2534900 + 42745 17585 28403 29119 -0.014000281787048152 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.5196533203125 1 973.520053 972.512776 0.16928 0.0001648 -0.44058 -0.00042891 -0.2713 -0.00026412 973.5195915529036 58.899 0.46931 58.899 58.654 59.123 0 60 20 4 0 0 0 0.0059585 2 32812 32708;32812 114.65 64.716 1 18054000 42746 3127 28404 29120 50231;50232 50232 0.025420439694244124 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2637939453125 2 487.263665 972.512776 0.25462 0.00012407 -0.13627 -6.6401E-05 0.11835 5.7667E-05 487.2634586088955 58.888 0.87752 58.888 58.34 59.217 0 108 37 5 0 0 0 0.019303 2 32825 32722;32825 64.236 27.255 1 146320000 42747 3127 28404 29120 50233;50234 50234 0.025420439694244124 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.518310546875 1 973.520053 972.512776 0.21853 0.00021275 1.5462 0.0015053 1.7647 0.001718 973.5207638924368 59.446 0.2962 58.955 58.792 59.089 -0.49079 28 13 3 0 0 0 0.009483 2 32390 32293;32390 81.89 45.763 1 2917100 42748 3127 28404 29120 50235;50236 50236 0.025420439694244124 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2638244628906 2 487.263665 972.512776 0.45598 0.00022218 0.52009 0.00025342 0.97607 0.00047561 487.26372349837817 59.493 0.56822 59.002 58.685 59.253 -0.49079 78 26 4 0 0 0 0.019303 1 32344 32344 64.236 15.89 1 19759000 42749 3127 28404 29120 50237 50237 0.025420439694244124 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2638244628906 2 487.263665 972.512776 0.64995 0.0003167 -0.10578 -5.1542E-05 0.54417 0.00026515 487.2635967730415 66.954 0.63597 60.778 60.455 61.091 -6.1757 120 35 4 0 0 0 0.010818 3 43545 43411;43545;43676 78.149 16.227 1 382620000 42750 3127 28404 29120 50238;50239;50240 50239 0.025420439694244124 NPISTVTEL 9 Unmodified _NPISTVTEL_ 0 0 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 973.52099609375 1 973.520053 972.512776 0.33702 0.0003281 0.024782 2.4125E-05 0.3618 0.00035222 973.5197345500623 66.957 0.49781 60.782 60.537 61.035 -6.1757 72 27 3 0 0 0 7.2069E-15 3 43594 43470;43594;43743 183.04 95.281 1 65015000 42751 3127 28404 29120 50241;50242;50243 50242 0.025420439694244124 NPITGEDEPY 10 Unmodified _NPITGEDEPY_ 0 0 0 ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7 ENSG00000146205|ENST00000674324|ANO7 ENSG00000146205|ENST00000674324|ANO7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.751220703125 2 567.751118 1133.48768 NaN NaN NaN NaN NaN NaN NaN 60.031 1 60.031 59.531 60.531 0 0 0 0 0.76313 1 33471 33471 13.906 5.9959 1 42752 5761 28405 29121 50244 50244 -0.07372055623818596 NPITVQTVY 9 Unmodified _NPITVQTVY_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7823486328125 2 517.779482 1033.54441 0.89556 0.0004637 0.54446 0.00028191 1.44 0.00074561 517.7797172130604 51.294 0.33315 51.294 51.167 51.5 0 46 14 4 0 0 0 0.011968 1 28291 28291 74.929 46.442 1 31015000 42753 16467 28406 29122 50245 50245 0.028980367233771176 NPITVQTVY 9 Unmodified _NPITVQTVY_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7791748046875 2 517.779482 1033.54441 0.19632 0.00010165 -0.084135 -4.3564E-05 0.11218 5.8085E-05 517.7792591128722 51.91 0.30634 51.476 51.325 51.631 -0.43367 47 15 5 0 0 0 0.0082485 2 27967 27967;28080 96.285 63.979 1 21243000 42754 16467 28406 29122 50246;50247 50246 0.028980367233771176 NPITVQTVY 9 Unmodified _NPITVQTVY_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7799682617188 2 517.779482 1033.54441 1.1416 0.00059108 0.41729 0.00021606 1.5589 0.00080715 517.7793039450368 59.295 0.4776 53.221 52.92 53.397 -6.0745 70 26 3 0 0 0 0.0086722 2 38071 37937;38071 88.954 56.648 1 108180000 42755 16467 28406 29122 50248;50249 50249 0.028980367233771176 NPITVQTVY 9 Unmodified _NPITVQTVY_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1034.2275390625 1 1034.55169 1033.54441 0.89797 0.000929 1.3339 0.00138 2.2319 0.002309 1034.5513476970184 59.295 0.38745 53.22 52.953 53.341 -6.0745 36 21 2 0 0 0 0.0014462 1 37942 37942 136.39 77.713 1 35108000 42756 16467 28406 29122 50250 50250 0.028980367233771176 NPIYDALSY 9 Unmodified _NPIYDALSY_ 0 0 0 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2555541992188 2 528.25584 1054.49713 NaN NaN NaN NaN NaN NaN NaN 67.101 1 66.618 66.118 67.118 -0.48323 0 0 0 0.7818 1 36653 36653 6.7232 0.96273 1 42757 4189 28407 29123 50251 50251 -0.027942425476112476 NPIYEHIGY 9 Unmodified _NPIYEHIGY_ 0 0 0 nc|ENSG00000106069|P52757-9|CHN2;ENSG00000106069|ENST00000222792|CHN2;ENST00000491856.1_1_7:29438037-29440456:+|nuORF nc|ENSG00000106069|P52757-9|CHN2 nc|ENSG00000106069|P52757-9|CHN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2696533203125 2 553.269281 1104.52401 NaN NaN NaN NaN NaN NaN NaN 45.397 1 45.397 44.897 45.897 0 0 0 0 0.01231 1 24742 24742 88.954 50.98 1 42758 16105 28408 29124 50252 50252 -0.02407133936435457 NPIYEHIGY 9 Unmodified _NPIYEHIGY_ 0 0 0 nc|ENSG00000106069|P52757-9|CHN2;ENSG00000106069|ENST00000222792|CHN2;ENST00000491856.1_1_7:29438037-29440456:+|nuORF nc|ENSG00000106069|P52757-9|CHN2 nc|ENSG00000106069|P52757-9|CHN2 MSMS AL20221201_MKP_PDAC_01 4 553.26904296875 2 553.269281 1104.52401 NaN NaN NaN NaN NaN NaN NaN 51.274 1 45.625 45.125 46.125 -5.649 0 0 0 0.0083389 1 32254 32254 96.285 54.19 1 42759 16105 28408 29124 50253 50253 -0.02407133936435457 NPIYEHVGY 9 Unmodified _NPIYEHVGY_ 0 0 0 ENSG00000128656|ENST00000409900|CHN1;nc|ENSG00000128656|P15882-3|CHN1 ENSG00000128656|ENST00000409900|CHN1 ENSG00000128656|ENST00000409900|CHN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2620849609375 2 546.261456 1090.50836 0.41132 0.00022469 -1.1145 -0.0006088 -0.70317 -0.00038411 546.2612666202552 39.193 0.35022 39.193 39.012 39.362 0 27 16 2 0 0 0 0.2001 1 21052 21052 23.148 11.508 1 2452900 42760 4083 28409 29125 50254 50254 -0.03327420453456398 NPIYNKRI 8 Unmodified _NPIYNKRI_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2937316894531 2 509.295633 1016.57671 NaN NaN NaN NaN NaN NaN NaN 87.399 1 87.399 86.899 87.899 0 0 0 0 0.97444 1 48397 48397 2.5775 0.27475 1 + 42761 19178 28410 29126 50255 50255 0.06908868917037125 NPIYQERRI 9 Unmodified _NPIYQERRI_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8877868652344 3 396.887645 1187.64111 0.21854 8.6735E-05 0.038698 1.5359E-05 0.25724 0.00010209 396.8876814743521 42.522 0.32597 42.513 42.318 42.644 -0.0088196 55 14 5 0 0 0 0.36964 1 22803 22803 13.615 5.6695 1 132460000 + 42762 22558 28411 29127 50256 50256 0.054790240031934445 NPIYQERRI 9 Unmodified _NPIYQERRI_ 0 0 0 REV__ENSG00000171428|ENST00000307719|NAT1 REV__ENSG00000171428|ENST00000307719|NAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2230224609375 3 396.887645 1187.64111 0.55675 0.00022097 -0.15835 -6.2846E-05 0.3984 0.00015812 396.8877945085458 46.663 0.33814 41.583 41.413 41.751 -5.0805 163 70 3 0 0 0 0.45045 1 28779 28779 10.151 2.6735 1 154260000 + 42763 22558 28411 29127 50257 50257 0.054790240031934445 NPKAFFSVL 9 Unmodified _NPKAFFSVL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7868957519531 2 511.78711 1021.55967 0.71442 0.00036563 -0.6263 -0.00032053 0.088123 4.51E-05 511.786710946625 71.967 1.0329 72.006 71.768 72.801 0.039024 131 49 5 0 0 0 0.008678 4 39749 39548;39645;39749;39918 88.904 52.859 1 169010000 42764 4309 28412 29128 50258;50259;50260;50261 50260 0.0497494831122367 NPKDVAVSY 9 Unmodified _NPKDVAVSY_ 0 0 0 ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;ENST00000562941.1_1_16:29473130-29474884:+|nuORF ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7559814453125 2 496.756007 991.497461 -0.58024 -0.00028824 -1.4478 -0.00071921 -2.028 -0.0010074 496.75577673915035 28.364 0.43163 28.364 28.189 28.621 0 53 23 3 0 0 0 0.0086904 1 14610 14610 107.19 57.254 1 12432000 42765 10450 28413 29129 50262 50262 0.0013717717223471482 NPKDVAVSY 9 Unmodified _NPKDVAVSY_ 0 0 0 ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;ENST00000562941.1_1_16:29473130-29474884:+|nuORF ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7564392089844 2 496.756007 991.497461 1.0876 0.00054026 -0.92598 -0.00045998 0.16159 8.0273E-05 496.7559119834552 32.229 0.41578 28.372 28.133 28.549 -3.8562 58 24 3 0 0 0 0.0082353 3 18267 18247;18267;18393 96.111 43.843 1 55484000 42766 10450 28413 29129 50263;50264;50265 50264 0.0013717717223471482 NPKEFPTYE 9 Unmodified _NPKEFPTYE_ 0 0 0 ENST00000486017.5_1_2:101541677-101580523:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2 ENST00000486017.5_1_2:101541677-101580523:+|nuORF ENST00000486017.5_1_2:101541677-101580523:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.765625 2 562.766571 1123.51859 -0.2614 -0.0001471 -0.69616 -0.00039178 -0.95756 -0.00053888 562.7663258717332 36.526 0.21141 36.277 36.193 36.405 -0.2497 15 9 2 0 0 0 0.43463 1 19175 19175 10.824 0.75 1 2712400 42767 7994 28414 29130 50266 50266 -0.03822857518912315 NPKEVKEEKA 10 Unmodified _NPKEVKEEKA_ 0 0 0 ENST00000578921.5_1_18:9860502-9860658:+|nuORF ENST00000578921.5_1_18:9860502-9860658:+|nuORF ENST00000578921.5_1_18:9860502-9860658:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 586.3154296875 2 586.319502 1170.62445 NaN NaN NaN NaN NaN NaN NaN 45.528 1 40.573 40.073 41.073 -4.9549 0 0 0 0.3465 1 27966 27966 34.402 10.381 1 42768 15546 28415 29131 50267 50267 0.04596478326561737 NPKLKDKS 8 Unmodified _NPKLKDKS_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2241821289062 2 465.274367 928.53418 0.41879 0.00019485 -0.58005 -0.00026988 -0.16126 -7.5032E-05 465.2739909141476 40.805 0.22605 40.502 40.356 40.582 -0.30304 18 10 2 0 0 0 8.7369 1 21604 21604 14.582 2.0501 1 2355400 42769 6400 28416 29132 50268 50268 0.06705473788792915 NPKLKDKS 8 Unmodified _NPKLKDKS_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2239074707031 2 465.274367 928.53418 0.45978 0.00021392 -0.40522 -0.00018854 0.054556 2.5384E-05 465.27404123898856 40.475 0.16694 40.48 40.382 40.549 0.0050545 11 7 2 0 0 0 8.7369 1 21536 21536 9.3474 0 1 1680900 42770 6400 28416 29132 50269 50269 0.06705473788792915 NPKNDWFM 8 Unmodified _NPKNDWFM_ 0 0 0 CON__Q6T181 CON__Q6T181 CON__Q6T181 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2377319335938 2 526.236927 1050.4593 NaN NaN NaN NaN NaN NaN NaN 2.2681 1 2.251 1.751 2.751 -0.017019 0 0 0 0.97444 1 1159 1159 0.79363 0.26887 1 + 42771 209 28417 29133 50270 50270 -0.06391032014084885 NPKPQYGGLFC 11 Unmodified _NPKPQYGGLFC_ 0 0 0 nc|ENSG00000140873|Q8TE60-2|ADAMTS18;ENSG00000140873|ENST00000282849|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 nc|ENSG00000140873|Q8TE60-2|ADAMTS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5347595214844 3 408.534103 1222.58048 0.31993 0.0001307 1.6279 0.00066507 1.9479 0.00079577 408.53496803064144 36.26 0.23965 36.26 36.148 36.388 0 36 11 4 0 0 0 0.63851 1 19204 19204 4.7159 2.9736 1 20999000 42772 5278 28418 29134 50271 50271 -0.0219082937139774 NPKQEEHAF 9 Unmodified _NPKQEEHAF_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2623901367188 2 550.261988 1098.50942 -0.30941 -0.00017025 -0.056471 -3.1074E-05 -0.36588 -0.00020133 550.2619570208853 16.62 0.063828 16.62 16.57 16.633 0 20 13 2 0 0 0 0.15471 1 8113 8113 27.629 17.555 1 894560 42773 6377 28419 29135 50272 50272 -0.035892060845753804 NPKQEEHAF 9 Unmodified _NPKQEEHAF_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1766357421875 3 367.177084 1098.50942 -0.59759 -0.00021942 -0.044201 -1.623E-05 -0.6418 -0.00023565 367.17704862727925 16.724 0.27753 16.724 16.542 16.819 0 174 72 3 0 0 0 0.03568 1 8184 8184 47.594 32.346 1 4112000 42774 6377 28419 29135 50273 50273 -0.035892060845753804 NPKQEEHAF 9 Unmodified _NPKQEEHAF_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1775207519531 3 367.177084 1098.50942 1.0274 0.00037724 -0.59108 -0.00021703 0.43634 0.00016021 367.17685674288384 17.34 0.23251 14.753 14.634 14.867 -2.5866 62 35 2 0 0 0 0.070838 1 9016 9016 36.506 25.707 1 13189000 42775 6377 28419 29135 50274 50274 -0.035892060845753804 NPKQEEHAF 9 Unmodified _NPKQEEHAF_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2618408203125 2 550.261988 1098.50942 0.3586 0.00019732 -0.52884 -0.000291 -0.17024 -9.3676E-05 550.2617032294496 17.377 0.16173 14.79 14.685 14.847 -2.5866 43 24 2 0 0 0 0.0094097 1 9030 9030 82.529 59.793 1 3077700 42776 6377 28419 29135 50275 50275 -0.035892060845753804 NPKRQTLVF 9 Unmodified _NPKRQTLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.82275390625 2 551.822015 1101.62948 0.10174 5.6144E-05 0.18008 9.9375E-05 0.28183 0.00015552 551.8222416367852 34.683 0.23514 34.71 34.561 34.796 0.027405 19 10 2 0 0 0 0.040683 1 18272 18272 49.554 28.017 1 4351400 42777 1536 28420 29136 50276 50276 0.08272826979850834 NPKWRNRMS 9 Unmodified _NPKWRNRMS_ 0 0 0 REV__ENST00000536241.1_1_12:6958209-6958627:-|nuORF REV__ENST00000536241.1_1_12:6958209-6958627:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.7799072265625 2 594.806374 1187.59819 0.67275 0.00040016 -1.6365 -0.00097338 -0.96371 -0.00057322 594.8050877812261 41.047 0.21259 36.439 36.371 36.583 -4.6079 20 12 2 0 0 0 0.20139 1 24683 24683 10.824 0 1 6481300 + 42778 18762 28421 29137 50277 50277 0.011899306741042892 NPKYIVLE 8 Unmodified _NPKYIVLE_ 0 0 0 ENSG00000129038|ENST00000261921|LOXL1;ENST00000562548.1_1_15:74240132-74244175:+|nuORF;ENST00000566011.5_1_15:74234368-74244175:+|nuORF ENSG00000129038|ENST00000261921|LOXL1 ENSG00000129038|ENST00000261921|LOXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5496826171875 1 975.550959 974.543683 0.576 0.00056192 -0.063559 -6.2005E-05 0.51244 0.00049991 975.5509191991231 73.047 0.26701 72.571 72.407 72.674 -0.47588 19 11 2 0 0 0 0.6895 1 39930 39930 18.135 4.6271 1 821940 42779 4110 28422 29138 50278 50278 0.05539242074326012 NPLAATHEF 9 Unmodified _NPLAATHEF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2482604980469 2 500.248349 998.482145 0.19452 9.7306E-05 0.1957 9.7901E-05 0.39022 0.00019521 500.24840771264076 40.246 0.36365 40.246 40.068 40.432 0 56 17 4 0 0 0 0.019303 2 21576 21576;21678 64.236 35.749 1 20703000 42780 1817 28423 29139 50279;50280 50279 -0.017156896249616693 NPLAATHEF 9 Unmodified _NPLAATHEF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2481384277344 2 500.248349 998.482145 0.43099 0.0002156 0.22624 0.00011317 0.65723 0.00032878 500.24837803745726 40.603 0.26937 40.3 40.128 40.397 -0.30304 22 12 2 0 0 0 0.013323 1 21452 21452 71.134 42.647 1 3603900 42781 1817 28423 29139 50281 50281 -0.017156896249616693 NPLAATHEF 9 Unmodified _NPLAATHEF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2480163574219 2 500.248349 998.482145 0.82185 0.00041113 0.0097696 4.8872E-06 0.83162 0.00041602 500.2480216649124 45.632 0.49907 40.677 40.437 40.936 -4.9549 74 33 3 0 0 0 0.0095811 2 27978 27978;28122 81.613 45.936 1 51045000 42782 1817 28423 29139 50282;50283 50282 -0.017156896249616693 NPLASLVSM 9 Oxidation (M) _NPLASLVSM(Oxidation (M))_ NPLASLVSM(1) NPLASLVSM(55) 0 0 1 nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2475280761719 2 474.24696 946.479368 NaN NaN NaN NaN NaN NaN NaN 61.181 1 60.692 60.192 61.192 -0.48932 0 0 0 0.056448 1 33322 33322 54.774 20.671 1 42783 1939 28424 29140 50284 50284 329 0.003987189258850776 NPLDEQHIF 9 Unmodified _NPLDEQHIF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.77197265625 2 556.772188 1111.52982 NaN NaN NaN NaN NaN NaN NaN 53.522 1 53.522 53.022 54.022 0 0 0 0 0.014715 1 29673 29673 85.642 61.621 1 42784 8420 28425 29141 50285 50285 -0.021480354247842115 NPLDEQHIF 9 Unmodified _NPLDEQHIF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7703857421875 2 556.772188 1111.52982 1.1379 0.00063354 -1.8254 -0.0010164 -0.68756 -0.00038282 556.7709442830179 60.444 0.39118 54.296 54.161 54.552 -6.1478 36 20 2 0 0 0 0.0048194 1 38979 38979 117.76 87.124 1 48146000 42785 8420 28425 29141 50286 50286 -0.021480354247842115 NPLDLALAL 9 Unmodified _NPLDLALAL_ 0 0 0 ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2 ENST00000598240.1_1_19:19105804-19136912:-|nuORF ENST00000598240.1_1_19:19105804-19136912:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2798767089844 2 470.279118 938.543683 0.37494 0.00017632 0.88112 0.00041437 1.2561 0.0005907 470.27959863618463 98.29 0.30234 98.097 97.909 98.211 -0.19321 18 10 3 0 0 0 0.25681 1 53702 53702 19.257 8.4331 1 391410 42786 879 28426 29142 50287 50287 0.0719524207431732 NPLDLALAL 9 Unmodified _NPLDLALAL_ 0 0 0 ENST00000598240.1_1_19:19105804-19136912:-|nuORF;nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2 ENST00000598240.1_1_19:19105804-19136912:-|nuORF ENST00000598240.1_1_19:19105804-19136912:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2793273925781 2 470.279118 938.543683 1.2086 0.00056837 -0.72744 -0.0003421 0.48115 0.00022627 470.27845041209173 100.78 0.10789 94.607 94.528 94.635 -6.1757 11 7 2 0 0 0 0.028475 1 67503 67503 56.177 14.082 1 17315000 42787 879 28426 29142 50288 50288 0.0719524207431732 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2454528808594 2 487.245472 972.476391 -0.19332 -9.4196E-05 -0.27333 -0.00013318 -0.46665 -0.00022737 487.24524887401157 48.383 0.58325 48.383 48.132 48.715 0 104 28 5 0 0 0 0.0090948 3 26441 26441;26544;26659 85.272 39.251 1 467910000 42788 8636 28427 29143 50289;50290;50291 50289 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.4826049804688 1 973.483667 972.476391 -0.26915 -0.00026202 -0.076001 -7.3986E-05 -0.34515 -0.000336 973.4835018393802 48.385 0.61168 48.385 48.149 48.761 0 89 29 5 0 0 0 0.0021556 3 26556 26445;26556;26672 131.27 63.187 1 170520000 42789 8636 28427 29143 50292;50293;50294 50293 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.245849609375 2 487.245472 972.476391 0.57645 0.00028087 -0.10509 -5.1205E-05 0.47136 0.00022967 487.24535084978595 48.335 0.31805 48.296 48.142 48.46 -0.038834 40 15 3 0 0 0 0.03568 2 26139 26037;26139 52.268 21.632 1 6218600 42790 8636 28427 29143 50295;50296 50296 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 973.4822998046875 1 973.483667 972.476391 0.67005 0.00065228 -0.86594 -0.00084298 -0.19589 -0.00019069 973.4827824783 48.394 0.31754 48.35 48.158 48.476 -0.04369 22 15 2 0 0 0 0.008678 1 26080 26080 88.904 34.13 1 4198400 42791 8636 28427 29143 50297 50297 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2462768554688 2 487.245472 972.476391 0.55238 0.00026914 0.43173 0.00021036 0.98411 0.0004795 487.24550645593393 56.317 0.73438 50.34 49.985 50.719 -5.9769 147 42 5 0 0 0 0.011968 3 35766 35766;35896;36022 74.929 36.955 1 953250000 42792 8636 28427 29143 50298;50299;50300 50298 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 973.483642578125 1 973.483667 972.476391 0.23388 0.00022767 -0.00099752 -9.7107E-07 0.23288 0.0002267 973.4836419954756 56.342 0.56776 50.365 50.081 50.649 -5.9769 93 32 4 0 0 0 0.0004779 3 35918 35787;35918;36048 144.35 66.201 1 238710000 42793 8636 28427 29143 50301;50302;50303 50302 -0.010948329272878254 NPLEETSAL 9 Unmodified _NPLEETSAL_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 487.245472 972.476391 1.6153 0.00078706 0.87232 0.00042503 2.4876 0.0012121 487.2474246841042 50.118 0.12044 50.069 50.006 50.127 -0.048824 -0.13549 0.00042254 NaN 74.929 13 5 3 NaN NaN NaN NaN 0 NaN NaN 0 767540 42794 8636 28427 29143 -0.010948329272878254 NPLEVVPSKFS 11 Unmodified _NPLEVVPSKFS_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8326416015625 2 608.832246 1215.64994 0.57388 0.0003494 -1.8535 -0.0011285 -1.2796 -0.00077907 608.8329143016692 71.878 0.54689 71.402 71.047 71.594 -0.47609 50 21 4 0 0 0 0.61059 1 39367 39367 10.8 6.2706 1 1749300 42795 7181 28428 29144 50304 50304 0.05073952848988483 NPLEVVPSKFS 11 Unmodified _NPLEVVPSKFS_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 608.832246 1215.64994 -0.33789 -0.00020572 0.15495 9.4336E-05 -0.18295 -0.00011138 609.3338859197554 71.397 0.25146 71.397 71.237 71.488 0 -0.0027861 0.0012558 NaN 10.8 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 783310 42796 7181 28428 29144 0.05073952848988483 NPLGGFVHY 9 Unmodified _NPLGGFVHY_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2531433105469 2 502.253434 1002.49232 -0.032223 -1.6184E-05 -1.3052 -0.00065552 -1.3374 -0.00067171 502.25368715741035 55.663 0.3741 55.185 54.986 55.36 -0.47798 49 17 4 0 0 0 0.013419 2 30155 30155;30263 70.865 30.416 1 14698000 42797 1793 28429 29145 50305;50306 50305 -0.008830818997239476 NPLGGFVHY 9 Unmodified _NPLGGFVHY_ 0 0 0 ENSG00000100316|ENST00000216146|RPL3;ENST00000417615.1_1_14:99439218-99439536:-|nuORF ENSG00000100316|ENST00000216146|RPL3 ENSG00000100316|ENST00000216146|RPL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2538146972656 2 502.253434 1002.49232 1.1723 0.00058878 0.25427 0.00012771 1.4266 0.00071649 502.2530053015925 61.382 0.55007 55.234 55.015 55.565 -6.1478 49 27 2 0 0 0 0.0093626 2 39485 39485;39622 82.939 36.019 1 83032000 42798 1793 28429 29145 50307;50308 50307 -0.008830818997239476 NPLHLDYVM 9 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ NPLHLDYVM(1) NPLHLDYVM(96) 0 0 1 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.27197265625 2 559.270967 1116.52738 0.77226 0.0004319 0.67689 0.00037856 1.4491 0.00081047 559.27133855364 49.524 0.27729 49.524 49.393 49.671 0 35 11 5 0 0 0 0.0082485 1 27230 27230 96.285 56.327 1 18626000 42799 4284 28430 29146 50309 50309 763 -0.026222071540814795 NPLHLDYVM 9 Oxidation (M) _NPLHLDYVM(Oxidation (M))_ NPLHLDYVM(1) NPLHLDYVM(110) 0 0 1 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2711791992188 2 559.270967 1116.52738 0.38053 0.00021282 0.0096514 5.3978E-06 0.39018 0.00021822 559.2711562975301 56.034 0.38879 50.113 49.953 50.342 -5.9211 47 22 3 0 0 0 0.0071894 1 35673 35673 111.29 53.816 1 34220000 42800 4284 28430 29146 50310 50310 763 -0.026222071540814795 NPLHLDYVM 9 Unmodified _NPLHLDYVM_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MSMS AL20221201_MKP_PDAC_01 4 551.2739868164062 2 551.273509 1100.53247 NaN NaN NaN NaN NaN NaN NaN 68.463 1 62.287 61.787 62.787 -6.1757 0 0 0 0.074615 1 44686 44686 49.933 15.531 1 42801 4284 28430 29147 50311 50311 -0.013779032914726486 NPLICPVCTKY 11 2 Carbamidomethyl (C) _NPLIC(Carbamidomethyl (C))PVC(Carbamidomethyl (C))TKY_ NPLIC(1)PVC(1)TKY NPLIC(92)PVC(92)TKY 0 2 0 ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN;nc|ENSG00000129197|Q86UA6-2|RPAIN ENSG00000129197|ENST00000381209|RPAIN ENSG00000129197|ENST00000381209|RPAIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.839111328125 2 682.838691 1363.66283 0.95552 0.00065247 0.82122 0.00056076 1.7767 0.0012132 682.8389711811144 55.835 0.19662 49.914 49.861 50.058 -5.9211 17 11 2 0 0 0 0.00017946 1 35584 35584 92.201 73.828 1 12692000 42802 4121 28431 29148 50312 50312 413;414 -0.004456753547628978 NPLKGDLANTF 11 Unmodified _NPLKGDLANTF_ 0 0 0 nc|ENSG00000138085|Q6UW56-2|ATRAID;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.311279296875 2 595.31422 1188.61389 0.6074 0.00036159 -0.23166 -0.00013791 0.37574 0.00022368 595.3141377281396 50.849 0.36201 50.435 50.278 50.64 -0.41351 47 17 4 0 0 0 0.00086394 2 27350 27350;27460 103.42 80.683 1 19626000 42803 5015 28432 29149 50313;50314 50313 0.02712495672130899 NPLKGDLANTF 11 Unmodified _NPLKGDLANTF_ 0 0 0 nc|ENSG00000138085|Q6UW56-2|ATRAID;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3134155273438 2 595.31422 1188.61389 0.89155 0.00053075 -1.6658 -0.00099167 -0.77424 -0.00046092 595.312732647617 50.472 0.20322 50.423 50.352 50.555 -0.048824 15 9 2 0 0 0 0.12206 1 27308 27308 49.554 35.648 1 1573000 42804 5015 28432 29149 50315 50315 0.02712495672130899 NPLKGDLANTF 11 Unmodified _NPLKGDLANTF_ 0 0 0 nc|ENSG00000138085|Q6UW56-2|ATRAID;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID nc|ENSG00000138085|Q6UW56-2|ATRAID MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3140869140625 2 595.31422 1188.61389 0.33317 0.00019834 -0.14189 -8.4467E-05 0.19128 0.00011387 595.3141467423292 56.975 0.39108 50.998 50.79 51.181 -5.9769 56 23 3 0 0 0 0.00051196 2 36384 36384;36529 107.1 84.363 1 72796000 42805 5015 28432 29149 50316;50317 50316 0.02712495672130899 NPLNGGRNW 9 Unmodified _NPLNGGRNW_ 0 0 0 ENST00000407418.7_1_22:39261369-39261624:-|nuORF ENST00000407418.7_1_22:39261369-39261624:-|nuORF ENST00000407418.7_1_22:39261369-39261624:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2571411132812 2 514.25704 1026.49953 -0.053086 -2.73E-05 0.21386 0.00010998 0.16077 8.2678E-05 514.2569783803357 76.566 0.60136 76.087 75.812 76.413 -0.47945 81 34 3 0 0 0 0.16226 1 41839 41839 26.884 0.61551 1 9681000 42806 12943 28433 29150 50318 50318 -0.012663492992714964 NPLNLIPFY 9 Unmodified _NPLNLIPFY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MSMS AL20221201_MKP_PDAC_01 4 545.80078125 2 545.800217 1089.58588 NaN NaN NaN NaN NaN NaN NaN 101.11 1 94.93 94.43 95.43 -6.1757 0 0 0 0.071041 1 67771 67771 50.855 32.72 1 42807 741 28434 29151 50319 50319 0.044672174827155686 NPLQKDPQY 9 Unmodified _NPLQKDPQY_ 0 0 0 nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7 nc|ENSG00000115685|Q15435-2|PPP1R7 nc|ENSG00000115685|Q15435-2|PPP1R7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7799682617188 2 551.780013 1101.54547 -0.17531 -9.6732E-05 -0.07292 -4.0236E-05 -0.24823 -0.00013697 551.7799059161985 26.314 0.27301 26.314 26.175 26.448 0 42 13 4 0 0 0 0.0013034 3 13493 13486;13493;13595 137.42 87.491 1 14428000 42808 3153 28435 29152 50320;50321;50322 50321 -0.0012374890770843194 NPLQKDPQY 9 Unmodified _NPLQKDPQY_ 0 0 0 nc|ENSG00000115685|Q15435-2|PPP1R7;ENSG00000115685|ENST00000234038|PPP1R7 nc|ENSG00000115685|Q15435-2|PPP1R7 nc|ENSG00000115685|Q15435-2|PPP1R7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.78125 2 551.780013 1101.54547 0.517 0.00028527 0.059081 3.26E-05 0.57608 0.00031787 551.7798086811202 29.931 0.28293 26.63 26.443 26.726 -3.3016 27 13 3 0 0 0 3.7274E-10 1 16787 16787 168.54 99.433 1 40999000 42809 3153 28435 29152 50323 50323 -0.0012374890770843194 NPLSGGDQY 9 Unmodified _NPLSGGDQY_ 0 0 0 ENSG00000079246|ENST00000392132|XRCC5;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF ENSG00000079246|ENST00000392132|XRCC5 ENSG00000079246|ENST00000392132|XRCC5 MSMS AL20221201_MKP_PDAC_01 4 475.7152404785156 2 475.714339 949.414125 NaN NaN NaN NaN NaN NaN NaN 38.38 1 34.012 33.512 34.512 -4.3689 0 0 0 0.053277 1 22634 22634 56.177 33.029 1 42810 1266 28436 29153 50324 50324 -0.06260559275619926 NPLSQSRGH 9 Unmodified _NPLSQSRGH_ 0 0 0 REV__ENSG00000137824|ENST00000338376|RMDN3 REV__ENSG00000137824|ENST00000338376|RMDN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2544555664062 2 498.254497 994.494441 0.31486 0.00015688 -0.20781 -0.00010354 0.10705 5.3338E-05 498.25421625482335 58.887 0.51833 58.887 58.63 59.148 0 48 22 3 0 0 0 0.07087 2 32743 32743;32852 39.95 39.95 1 10600000 + 42811 20271 28437 29154 50325;50326 50325 -0.0030265316189570513 NPLSQSRGH 9 Unmodified _NPLSQSRGH_ 0 0 0 REV__ENSG00000137824|ENST00000338376|RMDN3 REV__ENSG00000137824|ENST00000338376|RMDN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 498.254497 994.494441 0.31486 0.00015688 -0.20781 -0.00010354 0.10705 5.3338E-05 498.25421625482335 58.887 0.51833 58.887 58.63 59.148 0 -0.020409 -6.4562E-05 NaN 39.95 48 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10600000 + 42812 20271 28437 29154 -0.0030265316189570513 NPLSSLPP 8 Unmodified _NPLSSLPP_ 0 0 0 ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.4503784179688 1 824.451245 823.443968 -0.42682 -0.00035189 -0.24992 -0.00020605 -0.67675 -0.00055795 824.4510061976362 76.556 0.50838 76.076 75.835 76.343 -0.47945 69 30 3 0 0 0 0.15234 1 41938 41938 86.121 11.725 1 10382000 42813 11299 28438 29155 50327 50327 0.025184244603906336 NPLSSLPP 8 Unmodified _NPLSSLPP_ 0 0 0 ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF ENST00000263863.8_1_2:85924752-85925953:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.4525756835938 1 824.451245 823.443968 0.76454 0.00063032 -0.23505 -0.00019379 0.52948 0.00043653 824.4509702357585 84.321 0.61105 78.145 77.818 78.429 -6.1757 84 34 3 0 0 0 0.15234 1 55420 55420 86.121 8.137 1 63694000 42814 11299 28438 29155 50328 50328 0.025184244603906336 NPLSSPIP 8 Unmodified _NPLSSPIP_ 0 0 0 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.4500122070312 1 824.451245 823.443968 -0.006851 -5.6483E-06 -0.52334 -0.00043147 -0.53019 -0.00043712 824.4508680324938 76.044 0.33342 76.044 75.914 76.248 0 30 14 3 0 0 0 0.46494 1 42261 42261 38.151 0 1 2394400 42815 5457 28439 29156 50329 50329 0.025184244603906336 NPLSSPIP 8 Unmodified _NPLSSPIP_ 0 0 0 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.4533081054688 1 824.451245 823.443968 -0.42682 -0.00035189 -0.24992 -0.00020605 -0.67675 -0.00055795 824.4510061976362 76.556 0.50838 76.076 75.835 76.343 -0.47945 69 30 3 0 0 0 0.21583 1 41835 41835 67.344 3.781 1 10382000 42816 5457 28439 29156 50330 50330 0.025184244603906336 NPLSSPIP 8 Unmodified _NPLSSPIP_ 0 0 0 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 ENSG00000143032|ENST00000370445|BARHL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.4509887695312 1 824.451245 823.443968 0.76454 0.00063032 -0.23505 -0.00019379 0.52948 0.00043653 824.4509702357585 84.321 0.61105 78.145 77.818 78.429 -6.1757 84 34 3 0 0 0 0.18881 1 55298 55298 74.396 0 1 63694000 42817 5457 28439 29156 50331 50331 0.025184244603906336 NPLTITDTF 9 Unmodified _NPLTITDTF_ 0 0 0 ENSG00000158113|ENST00000339777|LRRC43 ENSG00000158113|ENST00000339777|LRRC43 ENSG00000158113|ENST00000339777|LRRC43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2646179199219 2 511.263665 1020.51278 0.72421 0.00037026 0.1316 6.7282E-05 0.85581 0.00043754 511.2636470980192 62.295 0.74118 56.119 55.803 56.544 -6.1757 136 40 5 0 0 0 0.14 1 40018 40018 29.082 2.1979 1 1349600000 42818 6566 28440 29157 50332 50332 0.0033404396941705272 NPLVACQCLCV 11 Unmodified _NPLVACQCLCV_ 0 0 0 ENST00000400331.9_1_7:20179171-20179363:-|nuORF ENST00000400331.9_1_7:20179171-20179363:-|nuORF ENST00000400331.9_1_7:20179171-20179363:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 581.3250122070312 2 581.774505 1161.53446 1.1745 0.00068327 -1.5387 -0.00089518 -0.36425 -0.00021191 581.7739114493679 96.887 0.16824 90.711 90.638 90.807 -6.1757 15 9 2 0 0 0 0.28752 1 64214 64214 1.1933 0 1 7047000 42819 12875 28441 29158 50333 50333 -0.03984933869514862 NPMADHTLRY 10 Unmodified _NPMADHTLRY_ 0 0 0 ENST00000549773.1_1_12:58164850-58165866:-|nuORF;ENST00000548681.1_1_12:58164719-58165893:-|nuORF;nc|ENSG00000037897|Q9UBP6-2|METTL1;ENSG00000037897|ENST00000324871|METTL1 ENST00000549773.1_1_12:58164850-58165866:-|nuORF ENST00000549773.1_1_12:58164850-58165866:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5297546386719 3 406.52924 1216.56589 1.1234 0.00045668 0.23104 9.3926E-05 1.3544 0.0005506 406.5288824460876 34.971 0.23769 30.875 30.735 30.973 -4.0951 21 13 2 0 0 0 0.52888 1 20273 20273 14.838 12.103 1 7316700 42820 630 28442 29159 50334 50334 -0.033729015195604006 NPMLEVVSL 9 Oxidation (M) _NPM(Oxidation (M))LEVVSL_ NPM(1)LEVVSL NPM(44)LEVVSL 0 0 1 ENSG00000121207|ENST00000336356|LRAT ENSG00000121207|ENST00000336356|LRAT ENSG00000121207|ENST00000336356|LRAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2676086425781 2 509.267893 1016.52123 0.431 0.0002195 -0.54719 -0.00027867 -0.11619 -5.9172E-05 509.2674642169076 69.297 0.38468 69.297 69.127 69.511 0 36 16 3 0 0 0 0.05447 1 38587 38587 43.858 31.327 1 1299000 42821 3570 28443 29160 50335 50335 633 0.01363274614425336 NPMPNAHLL 9 Unmodified _NPMPNAHLL_ 0 0 0 REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF REV__ENST00000391694.4_1_19:58988585-58991546:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2614440917969 2 503.760569 1005.50659 0.19751 9.9495E-05 3.2165 0.0016204 3.414 0.0017199 503.7637068629702 45.26 0.44418 45.26 45.016 45.46 0 57 23 4 0 0 0 0.18465 1 24573 24573 24.674 5.2349 1 21457000 + 42822 26370 28444 29161 50336 50336 0.00405247256912844 NPMRRIHSL 9 Unmodified _NPMRRIHSL_ 0 0 0 nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A nc|ENSG00000164045|P30304-2|CDC25A nc|ENSG00000164045|P30304-2|CDC25A MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2108154296875 3 375.209953 1122.60803 0.74573 0.00027981 1.2269 0.00046036 1.9727 0.00074017 375.21059960156344 23.977 0.35731 21.149 20.983 21.34 -2.8273 50 20 3 0 0 0 0.36964 1 13078 13078 13.615 5.6695 1 17222000 42823 7119 28445 29162 50337 50337 0.05163118679479339 NPMYCLFEY 9 Carbamidomethyl (C) _NPMYC(Carbamidomethyl (C))LFEY_ NPMYC(1)LFEY NPMYC(42)LFEY 0 1 0 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH;nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1 nc|ENSG00000289720|Q96J02-3|ITCH;nc|ENSG00000198373|O00308-2|WWP2;ENST00000518683.5_1_8:87410815-87460532:+|nuORF nc|ENSG00000198373|O00308-2|WWP2 MSMS AL20221201_MKP_PDAC_01 4 618.7576293945312 2 618.756835 1235.49912 NaN NaN NaN NaN NaN NaN NaN 94.099 1 87.923 87.423 88.423 -6.1757 0 0 0 0.10545 1 62318 62318 42.095 33.501 1 42824 10084;1253;3681 28446 29163 50338 50338 112 -0.10921273125677544 NPNEDVAIF 9 Unmodified _NPNEDVAIF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7469482421875 2 509.745639 1017.47673 0.76394 0.00038942 -0.70068 -0.00035717 0.063267 3.225E-05 509.7453248239064 60.386 0.46595 60.386 60.137 60.603 0 62 20 4 0 0 0 0.0083938 2 33612 33612;33722 108 54.635 1 20132000 42825 944;3759 28447 29164 50339;50340 50339 -0.03131413207427158 NPNEDVAIF 9 Unmodified _NPNEDVAIF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7471008300781 2 509.745639 1017.47673 0.45162 0.00023021 0.28412 0.00014483 0.73575 0.00037504 509.7461056185289 68.103 0.41063 61.927 61.673 62.083 -6.1757 40 23 2 0 0 0 0.039985 1 44334 44334 49.933 19.296 1 23324000 42826 944;3759 28447 29164 50341 50341 -0.03131413207427158 NPNHRTPTL 9 Unmodified _NPNHRTPTL_ 0 0 0 ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML;nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML ENST00000564725.1_1_15:74290377-74317280:+|nuORF ENST00000564725.1_1_15:74290377-74317280:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5211181640625 3 350.521074 1048.54139 1.7326 0.00060731 -0.60317 -0.00021142 1.1294 0.00039589 350.520916662209 19.588 0.28761 16.931 16.756 17.043 -2.6564 48 27 2 0 0 0 0.21643 1 10391 10391 20.581 10.43 1 8997200 42827 5238 28448 29165 50342 50342 0.01906206389230647 NPNIDPYDSY 10 Unmodified _NPNIDPYDSY_ 0 0 0 nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN nc|ENSG00000115808|O43815-2|STRN nc|ENSG00000115808|O43815-2|STRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2583618164062 2 599.256568 1196.49858 0.19443 0.00011651 2.1265 0.0012743 2.3209 0.0013908 599.2577079972848 46.665 0.42675 46.665 46.412 46.839 0 41 19 3 0 0 0 0.046375 1 25484 25484 60.074 45.236 1 2688100 42828 3163 28449 29166 50343 50343 -0.091806532495184 NPNKDPHYKLA 11 Unmodified _NPNKDPHYKLA_ 0 0 0 REV__nc|ENSG00000086061|P31689-2|DNAJA1 REV__nc|ENSG00000086061|P31689-2|DNAJA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.840087890625 2 648.838394 1295.66223 NaN NaN NaN NaN NaN NaN NaN 96.663 1 96.663 96.163 97.163 0 0 0 0 0.94293 1 53419 53419 0.26902 0 1 + 42829 17763 28450 29167 50344 50344 0.026229893120444103 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.3198852539062 2 534.31964 1066.62473 -0.24427 -0.00013052 0.23799 0.00012716 -0.006276 -3.3534E-06 534.3198059027524 25.561 0.20797 25.561 25.466 25.674 0 16 9 2 0 0 0 0.0095811 1 13113 13113 81.613 49.308 1 1575100 42830 9588 28451 29168 50345 50345 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.5481567382812 3 356.548852 1066.62473 NaN NaN NaN NaN NaN NaN NaN 25.761 1 25.744 25.244 26.244 -0.017006 0 0 0 0.071041 1 13221 13221 53.833 28.842 1 42831 9588 28451 29168 50346 50346 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.5477905273438 3 356.548852 1066.62473 0.11532 4.1117E-05 -0.27744 -9.8923E-05 -0.16212 -5.7805E-05 356.548679264893 25.406 0.12926 25.43 25.364 25.493 0.024429 11 6 2 0 0 0 0.031062 1 13144 13144 49.554 33.405 1 13896000 42832 9588 28451 29168 50347 50347 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3194580078125 2 534.31964 1066.62473 NaN NaN NaN NaN NaN NaN NaN 25.435 1 25.459 24.959 25.959 0.024429 0 0 0 0.00095703 1 13163 13163 133.7 89.844 1 42833 9588 28451 29168 50348 50348 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5494995117188 3 356.548852 1066.62473 1.4118 0.00050336 0.14016 4.9973E-05 1.5519 0.00055333 356.5488889016171 28.577 0.53769 25.429 25.119 25.656 -3.1482 96 27 5 0 0 0 0.095405 2 15968 15856;15968 45.7 24.163 1 238090000 42834 9588 28451 29168 50349;50350 50350 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.31982421875 2 534.31964 1066.62473 0.66847 0.00035718 0.025296 1.3516E-05 0.69377 0.00037069 534.31966215106 28.578 0.45042 25.43 25.16 25.61 -3.1482 74 23 4 0 0 0 2.6046E-06 2 15884 15884;16008 156.16 101.38 1 80511000 42835 9588 28451 29168 50351;50352 50351 0.09407942837083283 NPNLRKNVL 9 Unmodified _NPNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 356.548852 1066.62473 -0.4453 -0.00015877 0.75129 0.00026787 0.30599 0.0001091 356.5490741922573 25.578 0.27016 25.578 25.447 25.717 0 0.098748 0.00049228 NaN 49.554 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3639000 42836 9588 28451 29168 0.09407942837083283 NPNNHLQLY 9 Unmodified _NPNNHLQLY_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000475596.1_1_2:190306218-190316629:+|nuORF;ENST00000472286.5_1_2:190306218-190320233:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7796630859375 2 556.777805 1111.54106 1.2104 0.00067392 1.5902 0.00088536 2.8005 0.0015593 556.7776132271347 42.625 0.1939 37.941 37.832 38.026 -4.6846 22 12 3 0 0 0 0.0090851 1 25749 25749 85.357 29.18 1 13420000 42837 3117 28452 29169 50353 50353 -0.010252133306039468 NPNNHLQLY 9 Unmodified _NPNNHLQLY_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000475596.1_1_2:190306218-190316629:+|nuORF;ENST00000472286.5_1_2:190306218-190320233:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 556.777805 1111.54106 0.21667 0.00012064 -0.13526 -7.5309E-05 0.081408 4.5326E-05 556.7779230171166 38.481 0.19078 38.194 38.048 38.239 -0.28687 0.12672 -0.00049651 NaN 85.357 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1167400 42838 3117 28452 29169 -0.010252133306039468 NPNNMQVLY 9 Oxidation (M) _NPNNM(Oxidation (M))QVLY_ NPNNM(1)QVLY NPNNM(67)QVLY 0 0 1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7581176757812 2 554.758223 1107.50189 0.45855 0.00025438 -0.15363 -8.523E-05 0.30491 0.00016915 554.758326039089 37.829 0.46299 37.829 37.645 38.108 0 44 22 3 0 0 0 0.016184 2 20219 20112;20219 67.344 51.497 1 6128900 42839 7256 28453 29170 50354;50355 50355 1256 -0.04755681676488166 NPNSFILGL 9 Unmodified _NPNSFILGL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5282592773438 1 974.530558 973.523281 0.37338 0.00036387 -1.2171 -0.0011861 -0.84375 -0.00082226 974.528800324343 87.733 0.20679 87.228 87.101 87.308 -0.50423 15 9 2 0 0 0 0.08691 1 47978 47978 36.127 13.391 1 502900 42840 4672 28454 29171 50356 50356 0.03546071414530161 NPNSFILGL 9 Unmodified _NPNSFILGL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7691040039062 2 487.768917 973.523281 0.61384 0.00029941 -0.44341 -0.00021628 0.17042 8.3128E-05 487.76872525373636 87.754 0.40652 87.249 87.015 87.421 -0.50423 55 19 4 0 0 0 0.0082281 1 48016 48016 92.822 45.073 1 4780700 42841 4672 28454 29171 50357 50357 0.03546071414530161 NPNSFILGL 9 Unmodified _NPNSFILGL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7692565917969 2 487.768917 973.523281 1.3149 0.00064136 -0.2145 -0.00010463 1.1004 0.00053674 487.7687539579223 95.595 0.797 89.419 88.988 89.785 -6.1757 76 47 2 0 0 0 0.0071894 4 63227 63102;63227;63354;63495 111.29 53.816 1 16504000 42842 4672 28454 29171 50358;50359;50360;50361 50359 0.03546071414530161 NPNSGDFRF 9 Unmodified _NPNSGDFRF_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2415161132812 2 527.241055 1052.46756 1.1751 0.00061954 -0.97747 -0.00051536 0.19758 0.00010417 527.2408987859974 42.674 0.29069 42.674 42.507 42.798 0 33 14 3 0 0 0 0.017075 1 23081 23081 66.457 44.92 1 9255300 42843 4313 28455 29172 50362 50362 -0.05657761773113634 NPNSGDFRF 9 Unmodified _NPNSGDFRF_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2406005859375 2 527.241055 1052.46756 0.060076 3.1674E-05 -1.3034 -0.00068721 -1.2433 -0.00065554 527.2403735035838 42.99 0.23141 42.68 42.546 42.777 -0.31039 15 10 2 0 0 0 0.032796 1 22868 22868 53.833 37.986 1 4220300 42844 4313 28455 29172 50363 50363 -0.05657761773113634 NPNSGDFRF 9 Unmodified _NPNSGDFRF_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2408447265625 2 527.241055 1052.46756 0.74157 0.00039099 -1.5468 -0.00081555 -0.80524 -0.00042456 527.2398091819783 47.039 0.18212 41.959 41.903 42.085 -5.0805 25 15 2 0 0 0 0.062454 1 29112 29112 41.956 26.187 1 30409000 42845 4313 28455 29172 50364 50364 -0.05657761773113634 NPNSGVLSL 9 Unmodified _NPNSGVLSL_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7427673339844 2 450.742899 899.471246 0.090412 4.0752E-05 -0.40317 -0.00018173 -0.31276 -0.00014097 450.74255490366875 56.348 0.22706 56.348 56.247 56.474 0 18 10 2 0 0 0 0.1773 1 31381 31381 25.399 9.5521 1 3037100 42846 1378 28456 29173 50365 50365 0.017489080007635494 NPNSPSITY 9 Unmodified _NPNSPSITY_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4691162109375 1 992.468352 991.461075 -0.05947 -5.9022E-05 0.51149 0.00050764 0.45202 0.00044862 992.4688017883137 37.634 0.3316 37.634 37.475 37.806 0 47 16 4 0 0 0 1.0053E-06 2 20094 19984;20094 163.04 71.765 1 18833000 42847 1859 28457 29174 50366;50367 50367 -0.03499699724488892 NPNSPSITY 9 Unmodified _NPNSPSITY_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7380676269531 2 496.737814 991.461075 0.19637 9.7547E-05 0.47121 0.00023407 0.66758 0.00033161 496.7379942624154 37.628 0.38752 37.628 37.458 37.846 0 72 19 5 0 0 0 0.00856 2 20107 19998;20107 100.37 62.22 1 118250000 42848 1859 28457 29174 50368;50369 50369 -0.03499699724488892 NPNSPSITY 9 Unmodified _NPNSPSITY_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7370910644531 2 496.737814 991.461075 0.044794 2.2251E-05 -0.14925 -7.4136E-05 -0.10445 -5.1885E-05 496.7376440549892 37.908 0.14022 37.637 37.599 37.739 -0.27133 11 6 2 0 0 0 0.20428 1 19981 19981 22.736 11.096 1 1313100 42849 1859 28457 29174 50370 50370 -0.03499699724488892 NPNSPSITY 9 Unmodified _NPNSPSITY_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.4696655273438 1 992.468352 991.461075 0.55145 0.00054729 0.38709 0.00038417 0.93853 0.00093147 992.4688238002713 43.752 0.52715 38.987 38.693 39.22 -4.7648 91 32 4 0 0 0 0.00010239 4 26573 26445;26550;26573;26702 152.89 68.91 1 61995000 42850 1859 28457 29174 50371;50372;50373;50374 50373 -0.03499699724488892 NPNSPSITY 9 Unmodified _NPNSPSITY_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7383728027344 2 496.737814 991.461075 0.71498 0.00035516 0.57678 0.00028651 1.2918 0.00064166 496.73804342964615 43.732 0.65475 38.967 38.618 39.273 -4.7648 119 41 4 0 0 0 0.0082353 3 26633 26504;26633;26773 96.111 50.397 1 287900000 42851 1859 28457 29174 50375;50376;50377 50376 -0.03499699724488892 NPNTAPPT 8 Unmodified _NPNTAPPT_ 0 0 0 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.3937377929688 1 811.394458 810.387182 -0.052735 -4.2789E-05 0.76134 0.00061775 0.7086 0.00057496 811.3950477349417 37.631 0.25345 37.631 37.51 37.764 0 32 12 3 0 0 0 0.30525 1 19999 19999 54.774 0 1 5171900 42852 2824 28458 29175 50378 50378 -0.025596230961355104 NPNTAPPT 8 Unmodified _NPNTAPPT_ 0 0 0 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1377868652344 2 406.200867 810.387182 -0.03267 -1.3271E-05 0.52118 0.0002117 0.48851 0.00019843 406.20089216044687 37.66 0.27755 37.66 37.529 37.806 0 19 13 2 0 0 0 8.7369 1 20007 20007 24.674 0 1 1554500 42853 2824 28458 29175 50379 50379 -0.025596230961355104 NPNTAPPT 8 Unmodified _NPNTAPPT_ 0 0 0 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 ENSG00000111752|ENST00000544916|PHC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.3944702148438 1 811.394458 810.387182 0.94191 0.00076426 0.75435 0.00061207 1.6963 0.0013763 811.3951308450514 43.76 0.39943 38.995 38.74 39.139 -4.7648 43 24 2 0 0 0 0.18875 2 26502 26502;26632 74.423 10.186 1 13607000 42854 2824 28458 29175 50380;50381 50380 -0.025596230961355104 NPNTSAWHT 9 Unmodified _NPNTSAWHT_ 0 0 0 ENST00000260665.11_1_2:44126637-44126715:-|nuORF ENST00000260665.11_1_2:44126637-44126715:-|nuORF ENST00000260665.11_1_2:44126637-44126715:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2337036132812 2 514.23323 1026.45191 NaN NaN NaN NaN NaN NaN NaN 76.375 1 76.375 75.875 76.875 0 0 0 0 0.83329 1 42468 42468 3.5965 1.5367 1 42855 11228 28459 29176 50382 50382 -0.060260482901412615 NPNYRRNITL 10 Unmodified _NPNYRRNITL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8983459472656 3 420.898432 1259.67347 -0.11386 -4.7923E-05 1.4276 0.00060089 1.3138 0.00055296 420.8988824020211 30.303 0.27535 30.333 30.159 30.434 0.030106 22 11 3 0 0 0 0.65471 1 15819 15819 7.9454 2.8979 1 2385800 42856 319 28460 29177 50383 50383 0.05401811406181878 NPPDHDVVAM 10 Oxidation (M) _NPPDHDVVAM(Oxidation (M))_ NPPDHDVVAM(1) NPPDHDVVAM(60) 0 0 1 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7484741210938 2 555.747856 1109.48116 0.26181 0.0001455 0.347 0.00019285 0.60881 0.00033834 555.7480877788634 22.956 0.40825 20.178 19.973 20.381 -2.7784 34 27 2 0 0 0 0.046375 2 12433 12313;12433 60.074 38.537 1 5327800 42857 10254 28461 29178 50384;50385 50385 1664 -0.0692027205618615 NPPDHDVVAM 10 Unmodified _NPPDHDVVAM_ 0 0 0 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7539672851562 2 547.750398 1093.48624 1.1075 0.00060665 0.37001 0.00020267 1.4775 0.00080932 547.7508545337454 37.796 0.48692 33.428 33.11 33.597 -4.3689 46 29 2 0 0 0 0.087043 2 22214 22091;22214 49.554 32.441 1 13670000 42858 10254 28461 29179 50386;50387 50387 -0.056759681935545814 NPPEFLQESY 10 Unmodified _NPPEFLQESY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2813110351562 2 612.282586 1222.55062 0.36101 0.00022104 0.57858 0.00035425 0.93959 0.00057529 612.2820472417957 59.304 0.48206 59.304 59.095 59.577 0 34 20 3 0 0 0 0.038363 1 33001 33001 63.961 42.214 1 5315400 42859 1378 28462 29180 50388 50388 -0.05175489835755798 NPPEFLQESY 10 Unmodified _NPPEFLQESY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.28271484375 2 612.282586 1222.55062 0.64959 0.00039773 -0.55092 -0.00033732 0.098672 6.0415E-05 612.282219496428 67.072 0.32021 60.897 60.714 61.035 -6.1757 26 17 2 0 0 0 0.0086576 1 43668 43668 90.135 57.829 1 10294000 42860 1378 28462 29180 50389 50389 -0.05175489835755798 NPPEFTQTAY 10 Unmodified _NPPEFTQTAY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2694702148438 2 584.269478 1166.5244 0.10347 6.0455E-05 -3.4464 -0.0020136 -3.3429 -0.0019531 584.2695042675673 45.583 0.5599 45.583 45.379 45.939 0 93 29 6 0 0 0 0.00013919 2 24929 24815;24929 118.07 78.119 1 77929000 42861 1378 28463 29181 50390;50391 50391 -0.05219759007263747 NPPEFTQTAY 10 Unmodified _NPPEFTQTAY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2691650390625 2 584.269478 1166.5244 0.18305 0.00010695 -0.015683 -9.1632E-06 0.16737 9.7789E-05 584.2693592248605 46.033 0.31316 45.709 45.601 45.914 -0.32425 20 15 2 0 0 0 0.015688 1 24634 24634 79.596 58.059 1 6773400 42862 1378 28463 29181 50392 50392 -0.05219759007263747 NPPEFTQTAY 10 Unmodified _NPPEFTQTAY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2700805664062 2 584.269478 1166.5244 0.97834 0.00057162 2.4493 0.0014311 3.4277 0.0020027 584.7728342081521 52.798 0.57082 47.064 46.8 47.371 -5.7345 97 31 4 0 0 0 0.0090596 2 33413 33296;33413 89.401 65.38 1 209460000 42863 1378 28463 29181 50393;50394 50394 -0.05219759007263747 NPPIFSLNSY 10 Unmodified _NPPIFSLNSY_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2910766601562 2 576.290214 1150.56587 0.31314 0.00018046 0.48153 0.0002775 0.79467 0.00045796 576.2906096367892 77.395 0.23723 77.445 77.321 77.558 0.050102 20 9 3 0 0 0 0.52097 1 42731 42731 15.248 4.4246 1 2131400 42864 9772 28464 29182 50395 50395 -0.0033857824791994062 NPPIQFGPAL 10 Unmodified _NPPIQFGPAL_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2886352539062 2 527.290017 1052.56548 0.46769 0.00024661 -4.1354 -0.0021805 -3.6677 -0.0019339 527.288513389363 82.863 0.38593 82.366 82.102 82.488 -0.49751 22 16 2 0 0 0 0.69377 1 45370 45370 3.5965 0.60125 1 696540 + 42865 23661 28465 29183 50396 50396 0.04130046822888289 NPPRFGHP 8 Unmodified _NPPRFGHP_ 0 0 0 ENSG00000185823|ENST00000329468|NPAP1 ENSG00000185823|ENST00000329468|NPAP1 ENSG00000185823|ENST00000329468|NPAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2373657226562 2 461.238119 920.461684 0.46404 0.00021403 0.48423 0.00022335 0.94827 0.00043738 461.2381742487998 38.516 0.46453 34.147 33.884 34.348 -4.3689 64 29 3 0 0 0 0.74163 1 22613 22613 13.508 13.508 1 47487000 42866 9417 28466 29184 50397 50397 -0.001728154941019966 NPPSVEAIY 9 Unmodified _NPPSVEAIY_ 0 0 0 REV__ENSG00000151229|ENST00000280871|SLC2A13 REV__ENSG00000151229|ENST00000280871|SLC2A13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2510375976562 2 495.250557 988.486562 NaN NaN NaN NaN NaN NaN NaN 90.206 1 89.705 89.205 90.205 -0.50171 0 0 0 0.83329 1 49311 49311 3.5965 1.019 1 + 42867 21056 28467 29185 50398 50398 -0.008142252020547858 NPPVEHKF 8 Unmodified _NPPVEHKF_ 0 0 0 REV__nc|ENSG00000163214|Q6P158-3|DHX57 REV__nc|ENSG00000163214|Q6P158-3|DHX57 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7552185058594 2 484.253434 966.492316 1.0402 0.00050373 -0.10171 -4.9254E-05 0.9385 0.00045447 484.25336845789155 52.907 0.42739 47.103 46.891 47.318 -5.8042 37 23 2 0 0 0 0.57045 1 33365 33365 28.487 2.1456 1 32329000 + 42868 21736 28468 29186 50399 50399 0.0077291810027873 NPQAQTITL 9 Unmodified _NPQAQTITL_ 0 0 0 nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1 nc|ENSG00000185591|P08047-3|SP1 nc|ENSG00000185591|P08047-3|SP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.268310546875 2 493.269281 984.52401 NaN NaN NaN NaN NaN NaN NaN 48.152 1 48.152 47.652 48.652 0 0 0 0 0.29524 1 26402 26402 25.399 2.663 1 42869 9386 28469 29187 50400 50400 0.031128660635772576 NPQERTLTL 9 Unmodified _NPQERTLTL_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2941284179688 2 536.293288 1070.57202 0.28468 0.00015267 0.86377 0.00046324 1.1485 0.00061591 536.2938530798018 37.997 0.38433 37.997 37.764 38.148 0 34 18 2 0 0 0 0.00085914 1 20242 20242 140.63 69.5 1 36026000 42870 1671 28470 29188 50401 50401 0.039559399836207376 NPQERTLTL 9 Unmodified _NPQERTLTL_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2931518554688 2 536.293288 1070.57202 0.74808 0.00040119 0.46938 0.00025173 1.2175 0.00065292 536.293738214195 42.063 0.44917 37.378 37.143 37.592 -4.6846 62 28 3 0 0 0 0.023481 2 25272 25272;25412 60.074 32.445 1 58175000 42871 1671 28470 29188 50402;50403 50402 0.039559399836207376 NPQETYHYY 9 Unmodified _NPQETYHYY_ 0 0 0 ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2597045898438 2 607.759278 1213.504 -0.81419 -0.00049483 -0.40986 -0.0002491 -1.2241 -0.00074393 607.7588393874254 30.118 0.22765 30.118 30.015 30.243 0 24 10 3 0 0 0 0.00012323 1 15640 15640 152.41 104.66 1 4085900 42872 1892 28471 29189 50404 50404 -0.0942092966704422 NPQGCRLFY 9 Carbamidomethyl (C) _NPQGC(Carbamidomethyl (C))RLFY_ NPQGC(1)RLFY NPQGC(110)RLFY 0 1 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7736206054688 2 577.774208 1153.53386 1.2082 0.00069807 -0.78698 -0.0004547 0.42122 0.00024337 577.773766083872 47.846 0.43475 42.613 42.386 42.821 -5.2339 54 26 3 0 0 0 0.0067112 2 29826 29696;29826 112.59 76.466 1 31570000 42873 3321 28472 29190 50405;50406 50406 338 -0.03676269202719595 NPQHVFLTF 9 Unmodified _NPQHVFLTF_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;ENST00000470139.1_2_1:43891781-43893406:+|nuORF nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8343505859375 2 551.787641 1101.56073 1.0246 0.00056536 2.5452 0.0014044 3.5698 0.0019698 551.7895374088865 66.175 0.19585 66.185 66.064 66.26 0.0095596 14 9 2 0 0 0 0.12183 1 36297 36297 34.102 14.663 1 2645000 42874 10061 28473 29191 50407 50407 0.0140116268012207 NPQIHFLVY 9 Unmodified _NPQIHFLVY_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1 nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2960815429688 2 565.803291 1129.59203 0.21678 0.00012265 0.2745 0.00015532 0.49128 0.00027797 565.8037882754337 69.29 0.24863 68.81 68.675 68.923 -0.48071 19 10 3 0 0 0 0.23158 1 37856 37856 20.454 11.106 1 1215500 42875 639 28474 29192 50408 50408 0.032417357142321634 NPQKGIGVM 9 Unmodified _NPQKGIGVM_ 0 0 0 ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2547912597656 2 472.25512 942.495686 1.4024 0.00066227 1.2486 0.00058967 2.651 0.0012519 472.2545282667764 33.936 0.31237 29.95 29.785 30.097 -3.9853 31 16 3 0 0 0 0.05447 1 19528 19528 43.858 22.112 1 6525500 42876 2459 28475 29193 50409 50409 0.022138448826581225 NPQKGIGVM 9 Unmodified _NPQKGIGVM_ 0 0 0 ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A ENSG00000106789|ENST00000375077|CORO2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 472.25512 942.495686 0.70603 0.00033343 1.5841 0.00074812 2.2902 0.0010815 472.25626028183524 30.247 0.15019 30.166 30.082 30.232 -0.080429 0.10797 0.0001527 NaN 43.858 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 555690 42877 2459 28475 29193 0.022138448826581225 NPQLQKPLF 9 Unmodified _NPQLQKPLF_ 0 0 0 ENSG00000171459|ENST00000304720|OR1L6;nc|ENSG00000171459|Q8NGR2|OR1L6 ENSG00000171459|ENST00000304720|OR1L6 ENSG00000171459|ENST00000304720|OR1L6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8941650390625 3 362.209836 1083.60768 0.083356 3.0192E-05 0.10952 3.967E-05 0.19288 6.9862E-05 362.20989667038384 34.134 0.22993 34.163 34.036 34.266 0.028934 17 10 2 0 0 0 0.20883 1 18021 18021 8.1555 3.6267 1 3958300 42878 8102 28476 29194 50410 50410 0.06922022231265146 NPQLSDGLVY 10 Unmodified _NPQLSDGLVY_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2777709960938 2 553.279846 1104.54514 0.83116 0.00045986 -0.77794 -0.00043042 0.053218 2.9444E-05 553.279119012982 57.269 0.3076 57.269 57.111 57.419 0 31 13 3 0 0 0 0.04925 2 31823 31823;31937 58.679 24.576 1 12088000 42879 4309 28477 29195 50411;50412 50411 -0.0029516862757645868 NPQQFEVLF 9 Unmodified _NPQQFEVLF_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2857055664062 2 561.284931 1120.55531 0.35552 0.00019955 0.29846 0.00016752 0.65398 0.00036707 561.2853412201007 83.541 0.33355 83.541 83.383 83.717 0 22 17 2 0 0 0 0.5029 1 46345 46345 7.2892 2.5332 1 347430 42880 4654 28478 29196 50413 50413 -0.00014560902354787686 NPQQFEVLF 9 Unmodified _NPQQFEVLF_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2860717773438 2 561.284931 1120.55531 0.69553 0.00039039 -0.303 -0.00017007 0.39253 0.00022032 561.2842163686461 84.056 0.46426 83.557 83.288 83.753 -0.49961 35 19 3 0 0 0 0.10734 2 45963 45963;46060 32.305 6.9062 1 1460800 42881 4654 28478 29196 50414;50415 50414 -0.00014560902354787686 NPQSRLAF 8 Unmodified _NPQSRLAF_ 0 0 0 ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF ENST00000225873.8_2_17:33905316-33905562:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7520141601562 2 466.751059 931.487565 NaN NaN NaN NaN NaN NaN NaN 50.425 1 50.376 49.876 50.876 -0.048824 0 0 0 0.97348 1 27268 27268 5.7604 0 1 42882 11045 28479 29197 50416 50416 0.019080339575111793 NPQTGQWRY 9 Unmodified _NPQTGQWRY_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2765502929688 2 575.275429 1148.53631 -0.11163 -6.4216E-05 0.82011 0.00047179 0.70848 0.00040757 575.2759590942811 33.084 0.21804 32.925 32.81 33.028 -0.15918 18 8 3 0 0 0 0.0071894 1 17254 17254 111.29 62.941 1 2967900 42883 6856 28480 29198 50417 50417 -0.032020974733768526 NPQWVSVTY 9 Unmodified _NPQWVSVTY_ 0 0 0 ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1;ENST00000524192.6_1_20:61904210-61909556:+|nuORF;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2693481445312 2 547.269281 1092.52401 -0.37084 -0.00020295 0.5132 0.00028086 0.14236 7.791E-05 547.2697307685564 61.31 0.33169 60.821 60.654 60.986 -0.48932 41 15 4 0 0 0 0.05447 1 33366 33366 43.858 31.327 1 7246400 42884 1931 28481 29199 50418 50418 -0.018551339364194064 NPRADSIHNTY 11 Unmodified _NPRADSIHNTY_ 0 0 0 nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.8743286132812 3 429.874064 1286.60036 -0.43848 -0.00018849 0.96049 0.00041289 0.52201 0.0002244 429.87448982822235 18.684 0.14521 18.684 18.625 18.77 0 34 15 3 0 0 0 0.57006 1 9308 9308 12.856 9.01 1 2077900 42885 689 28482 29200 50419 50419 -0.03147362107097251 NPRADSIHNTY 11 Unmodified _NPRADSIHNTY_ 0 0 0 nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.8744201660156 3 429.874064 1286.60036 1.2471 0.0005361 -0.48785 -0.00020971 0.75925 0.00032638 429.8741262093883 20.208 0.47042 17.515 17.35 17.82 -2.693 45 30 2 0 0 0 0.43683 1 10749 10749 19.615 17.181 1 5018400 42886 689 28482 29200 50420 50420 -0.03147362107097251 NPRALSFVL 9 Unmodified _NPRALSFVL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7970886230469 2 508.798009 1015.58147 0.061819 3.1453E-05 -1.1621 -0.00059127 -1.1003 -0.00055982 508.7977171395003 68.68 0.25523 68.199 68.053 68.309 -0.48071 14 11 2 0 0 0 0.14 1 37542 37542 29.082 5.061 1 1254900 42887 16067;16068 28483 29201 50421 50421 0.07429753059807354 NPRALSFVL 9 Unmodified _NPRALSFVL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7983703613281 2 508.798009 1015.58147 0.67984 0.0003459 -0.21634 -0.00011007 0.4635 0.00023583 508.7979256157154 68.226 0.47478 68.251 68.004 68.479 0.025146 64 23 3 0 0 0 0.024882 2 37403 37403;37512 58.679 20.705 1 121530000 42888 16067;16068 28483 29201 50422;50423 50422 0.07429753059807354 NPRALSFVL 9 Unmodified _NPRALSFVL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7976989746094 2 508.798009 1015.58147 -0.037571 -1.9116E-05 -0.22552 -0.00011474 -0.26309 -0.00013386 508.79788636018367 84.898 0.66106 78.722 78.564 79.225 -6.1757 60 40 2 0 0 0 0.044011 2 56018 55881;56018 47.749 7.7256 1 17636000 42889 16067;16068 28483 29201 50424;50425 50425 0.07429753059807354 NPRALSFVL 9 Unmodified _NPRALSFVL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7982177734375 2 508.798009 1015.58147 1.0239 0.00052094 -0.78826 -0.00040106 0.23561 0.00011988 508.7978069126467 86.371 1.3193 80.195 79.361 80.681 -6.1757 102 72 2 0 0 0 0.018301 2 57082 56963;57082 65.235 15.831 1 22465000 42890 16067;16068 28483 29201 50426;50427 50427 0.07429753059807354 NPRDGFDMF 9 Oxidation (M) _NPRDGFDM(Oxidation (M))F_ NPRDGFDM(1)F NPRDGFDM(54)F 0 0 1 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2;nc|ENSG00000175662|Q6ZVM7-4|TOM1L2 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.735107421875 2 557.734748 1113.45494 0.12775 7.1253E-05 -0.72717 -0.00040557 -0.59942 -0.00033432 557.7348215276957 41.915 0.27925 41.915 41.751 42.03 0 33 14 3 0 0 0 0.032796 1 22631 22631 53.833 39.927 1 6423400 42891 8535 28484 29202 50428 50428 1448 -0.09724541227660666 NPRDGFDMF 9 Unmodified _NPRDGFDMF_ 0 0 0 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2;nc|ENSG00000175662|Q6ZVM7-4|TOM1L2 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.739501953125 2 549.737291 1097.46003 0.89893 0.00049418 2.2806 0.0012537 3.1795 0.0017479 549.7381718174772 63.463 0.30868 57.287 57.197 57.506 -6.1757 38 17 3 0 0 0 0.044296 1 41095 41095 47.594 17.37 1 12812000 42892 8535 28484 29203 50429 50429 -0.08480237365029097 NPREDYLDVY 10 Unmodified _NPREDYLDVY_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.2989501953125 2 642.298767 1282.58298 -0.6055 -0.00038891 -2.5891 -0.001663 -3.1946 -0.0020519 642.2974210558483 48.466 0.28452 48.466 48.373 48.658 0 23 13 2 0 0 0 0.1899 1 26600 26600 34.932 16.786 1 2869100 42893 10710 28485 29204 50430 50430 -0.04700702432774051 NPREKDYVY 9 Unmodified _NPREKDYVY_ 0 0 0 ENSG00000136048|ENST00000258534|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.1962585449219 3 395.196256 1182.56694 0.72468 0.00028639 0.098792 3.9042E-05 0.82347 0.00032543 395.1962985024227 22.481 0.28925 19.703 19.554 19.844 -2.7784 23 15 2 0 0 0 0.31356 1 12085 12085 16.566 12.376 1 3990800 42894 4781 28486 29205 50431 50431 -0.017043638790028126 NPRFSDLTF 9 Unmodified _NPRFSDLTF_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7737426757812 2 548.774731 1095.53491 1.0651 0.00058452 1.3901 0.00076287 2.4553 0.0013474 548.7752408296466 64.712 0.38945 58.536 58.363 58.752 -6.1757 28 21 2 0 0 0 0.012668 2 41954 41954;42095 72.968 26.047 1 12923000 42895 16250 28487 29206 50432;50433 50432 -0.009037315621526432 NPRGARVLAL 10 Unmodified _NPRGARVLAL_ 0 0 0 ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2205200195312 3 356.220847 1065.64071 -0.061327 -2.1846E-05 0.63371 0.00022574 0.57239 0.0002039 356.2210981365617 34.885 0.38883 34.913 34.733 35.122 0.027401 50 17 4 0 0 0 0.24511 2 18373 18373;18481 30.703 14.138 1 29097000 42896 11943 28488 29207 50434;50435 50434 0.11051649073965564 NPRGARVLAL 10 Unmodified _NPRGARVLAL_ 0 0 0 ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8278198242188 2 533.827632 1065.64071 0.047821 2.5528E-05 0.47492 0.00025353 0.52274 0.00027905 533.8279030569315 34.887 0.28728 34.915 34.774 35.061 0.027401 26 12 3 0 0 0 0.095786 1 18395 18395 32.305 21.482 1 4434400 42897 11943 28488 29207 50436 50436 0.11051649073965564 NPRGARVLAL 10 Unmodified _NPRGARVLAL_ 0 0 0 ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF ENST00000338961.10_1_9:130890061-130890178:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2211303710938 3 356.220847 1065.64071 1.0553 0.00037593 0.086784 3.0914E-05 1.1421 0.00040684 356.2208911471217 38.522 0.45018 34.154 33.98 34.43 -4.3689 69 28 3 0 0 0 0.22237 2 22805 22672;22805 32.037 10.772 1 67112000 42898 11943 28488 29207 50437;50438 50438 0.11051649073965564 NPRIPYTEL 9 Unmodified _NPRIPYTEL_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.798583984375 2 551.798206 1101.58186 0.28701 0.00015837 -3.3486 -0.0018477 -3.0616 -0.0016894 551.7983958736014 51.816 0.28641 51.816 51.622 51.908 0 27 12 3 0 0 0 0.05447 1 28661 28661 43.858 19.838 1 4014500 42899 2602 28489 29208 50439 50439 0.035131279889810685 NPRIPYTEL 9 Unmodified _NPRIPYTEL_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7996215820312 2 551.798206 1101.58186 0.65646 0.00036223 0.26103 0.00014403 0.91749 0.00050627 551.7983422285699 52.341 0.37139 51.908 51.73 52.101 -0.43367 48 18 4 0 0 0 0.03568 2 28232 28232;28350 52.268 30.522 1 8622300 42900 2602 28489 29208 50440;50441 50440 0.035131279889810685 NPRIPYTEL 9 Unmodified _NPRIPYTEL_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.30029296875 2 551.798206 1101.58186 0.33961 0.0001874 -0.9532 -0.00052598 -0.61359 -0.00033858 551.7979564729225 57.913 0.43204 51.886 51.666 52.098 -6.0275 46 24 3 0 0 0 0.0082475 2 37052 37052;37197 92.653 54.679 1 35266000 42901 2602 28489 29208 50442;50443 50442 0.035131279889810685 NPRIRVESL 9 Unmodified _NPRIRVESL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8800964355469 3 361.88049 1082.61964 -0.72779 -0.00026337 1.1727 0.00042438 0.44493 0.00016101 361.8808026659586 33.039 0.2219 33.039 32.908 33.13 0 18 10 2 0 0 0 0.40615 1 17302 17302 12.175 1.2758 1 2234800 42902 2658 28490 29209 50444 50444 0.08163638974451715 NPRIRVESL 9 Unmodified _NPRIRVESL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.8809814453125 3 361.88049 1082.61964 -0.26929 -9.7452E-05 1.2799 0.00046317 1.0106 0.00036572 361.8809166585633 33.122 0.21832 32.962 32.86 33.078 -0.15918 22 8 3 0 0 0 0.11005 1 17269 17269 32.037 9.3794 1 3647200 42903 2658 28490 29209 50445 50445 0.08163638974451715 NPRIRVESL 9 Unmodified _NPRIRVESL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8813781738281 3 361.88049 1082.61964 1.7212 0.00062288 0.19563 7.0796E-05 1.9169 0.00069368 361.8805843078488 36.956 0.38812 32.672 32.455 32.843 -4.2835 44 23 2 0 0 0 0.171 1 21621 21621 26.021 8.5781 1 16666000 42904 2658 28490 29209 50446 50446 0.08163638974451715 NPRKHITSL 9 Unmodified _NPRKHITSL_ 0 0 0 ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF ENSG00000183474|ENST00000380729|GTF2H2C ENSG00000183474|ENST00000380729|GTF2H2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8771362304688 3 355.876969 1064.60908 -0.054686 -1.9461E-05 1.1335 0.0004034 1.0788 0.00038394 355.8773319350149 15.377 0.11612 15.383 15.317 15.433 0.0057764 12 6 3 0 0 0 0.14 1 7665 7665 21.59 0 1 3523900 42905 5720 28491 29210 50447 50447 0.07935656320046292 NPRKHITSL 9 Unmodified _NPRKHITSL_ 0 0 0 ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF ENSG00000183474|ENST00000380729|GTF2H2C ENSG00000183474|ENST00000380729|GTF2H2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8775329589844 3 355.876969 1064.60908 0.87013 0.00030966 0.57739 0.00020548 1.4475 0.00051514 355.87712072987813 16.585 0.27363 14.028 13.889 14.163 -2.557 107 41 3 0 0 0 0.23158 1 8553 8553 14.405 14.405 1 31082000 42906 5720 28491 29210 50448 50448 0.07935656320046292 NPRKHITSL 9 Unmodified _NPRKHITSL_ 0 0 0 ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENST00000521942.5_1_5:70344502-70358599:-|nuORF ENSG00000183474|ENST00000380729|GTF2H2C ENSG00000183474|ENST00000380729|GTF2H2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3121948242188 2 533.311815 1064.60908 0.13717 7.3157E-05 0.43141 0.00023007 0.56858 0.00030323 533.312096586151 16.562 0.16258 14.005 13.937 14.1 -2.557 36 23 2 0 0 0 0.039985 1 8584 8584 49.933 24.534 1 2815300 42907 5720 28491 29210 50449 50449 0.07935656320046292 NPRLLDDVSF 10 Unmodified _NPRLLDDVSF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2;nc|ENSG00000070718|P53677-2|AP3M2;ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000070718|ENST00000396926|AP3M2;ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.3080444335938 2 588.306395 1174.59824 0.11317 6.6577E-05 0.060459 3.5568E-05 0.17363 0.00010215 588.3069526713903 63.337 0.37551 63.337 63.096 63.472 0 27 18 2 0 0 0 0.14688 1 35341 35341 40.239 15.248 1 2040300 42908 9317;1034 28492 29211 50450 50450 0.017922091550644836 NPRLLRVAL 9 Unmodified _NPRLLRVAL_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000511669.1_1_4:74904005-74904475:-|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2296142578125 3 351.229342 1050.6662 0.2234 7.8463E-05 0.33502 0.00011767 0.55841 0.00019613 351.22946750461637 48.439 0.36965 48.395 48.239 48.609 -0.04369 51 18 4 0 0 0 0.03568 2 26094 26094;26199 40.239 23.673 1 20112000 42909 7060 28493 29212 50451;50452 50451 0.14289123596404352 NPRLLRVAL 9 Unmodified _NPRLLRVAL_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000511669.1_1_4:74904005-74904475:-|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3408203125 2 526.340375 1050.6662 0.30877 0.00016252 0.038067 2.0036E-05 0.34683 0.00018255 526.3403286135334 48.401 0.25472 48.357 48.281 48.536 -0.04369 27 12 3 0 0 0 0.022193 1 26117 26117 61.357 29.052 1 6389000 42910 7060 28493 29212 50453 50453 0.14289123596404352 NPRLLRVAL 9 Unmodified _NPRLLRVAL_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000511669.1_1_4:74904005-74904475:-|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2297668457031 3 351.229342 1050.6662 1.5619 0.00054858 -0.1636 -5.7461E-05 1.3983 0.00049112 351.22924119379803 81.779 0.8784 75.604 75.227 76.106 -6.1757 92 48 2 0 0 0 0.07916 3 53559 53559;53697;53839 34.932 22.757 1 17869000 42911 7060 28493 29212 50454;50455;50456 50454 0.14289123596404352 NPRLLRVAL 9 Unmodified _NPRLLRVAL_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000511669.1_1_4:74904005-74904475:-|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3409423828125 2 526.340375 1050.6662 0.92042 0.00048445 -0.30648 -0.00016131 0.61394 0.00032314 526.3401536499285 81.717 0.69341 75.541 75.308 76.001 -6.1757 67 39 2 0 0 0 0.03568 1 53720 53720 52.268 14.294 1 12540000 42912 7060 28493 29212 50457 50457 0.14289123596404352 NPRLRRRGNPR 11 Unmodified _NPRLRRRGNPR_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.5830078125 2 696.413792 1390.81303 NaN NaN NaN NaN NaN NaN NaN 29.522 1 29.552 29.052 30.052 0.030106 0 0 0 0.93969 1 15411 15411 2.7352 0 1 + 42913 18194 28494 29213 50458 50458 0.1332561353406163 NPRNFSDNQL 10 Unmodified _NPRNFSDNQL_ 0 0 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7893676757812 2 602.788901 1203.56325 -0.96994 -0.00058467 1.0092 0.00060835 0.039284 2.368E-05 602.7896160724653 30.321 0.18137 30.321 30.201 30.383 0 15 8 2 0 0 0 0.02847 1 15740 15740 61.602 38.866 1 2365300 42914 6604 28495 29214 50459 50459 -0.030390336528625994 NPRNFSDNQL 10 Unmodified _NPRNFSDNQL_ 0 0 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2922973632812 2 602.788901 1203.56325 0.72748 0.00043852 3.2177 0.0019396 3.9452 0.0023781 602.7893166260093 34.078 0.53982 30.092 29.676 30.216 -3.9853 61 29 3 0 0 0 0.17804 1 19562 19562 49.554 26.818 1 9421200 42915 6604 28495 29214 50460 50460 -0.030390336528625994 NPRNTEAVTL 10 Unmodified _NPRNTEAVTL_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.796142578125 2 557.796195 1113.57784 0.2631 0.00014676 -0.027321 -1.524E-05 0.23578 0.00013152 557.7960594994128 31.59 0.25707 31.59 31.463 31.72 0 22 12 2 0 0 0 0.1899 1 16436 16436 34.932 7.3033 1 5706700 42916 3417 28496 29215 50461 50461 0.02559038495292043 NPRNTEAVTL 10 Unmodified _NPRNTEAVTL_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7969360351562 2 557.796195 1113.57784 0.86993 0.00048524 -0.25361 -0.00014146 0.61632 0.00034378 557.7961043236045 35.215 0.38046 31.12 30.935 31.316 -4.0951 50 22 3 0 0 0 0.0057332 2 20343 20343;20467 96.367 46.434 1 20607000 42917 3417 28496 29215 50462;50463 50462 0.02559038495292043 NPRPGQLGRL 10 Unmodified _NPRPGQLGRL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8844299316406 3 369.884235 1106.63087 0.18661 6.9024E-05 1.0731 0.00039693 1.2597 0.00046595 369.88422027115666 27.791 0.13489 27.82 27.75 27.885 0.029566 7 5 2 0 0 0 0.27276 1 14466 14466 24.882 16.726 1 2815900 42918 5230 28497 29216 50464 50464 0.08182461068622615 NPRPYMQATEW 11 Unmodified _NPRPYMQATEW_ 0 0 0 REV__ENSG00000184675|ENST00000374869|AMER1 REV__ENSG00000184675|ENST00000374869|AMER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.8830261230469 3 464.883683 1391.62922 NaN NaN NaN NaN NaN NaN NaN 15.816 1 15.816 15.316 16.316 0 0 0 0 0.94307 1 7653 7653 0.08335 0.010087 1 + 42919 23435 28498 29217 50465 50465 -0.05092960802335256 NPRQINWTVL 10 Unmodified _NPRQINWTVL_ 0 0 0 ENSG00000114391|ENST00000394077|RPL24 ENSG00000114391|ENST00000394077|RPL24 ENSG00000114391|ENST00000394077|RPL24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8441162109375 2 620.843479 1239.67241 NaN NaN NaN NaN NaN NaN NaN 63.588 1 63.577 63.077 64.077 -0.010532 0 0 0 0.168 1 34790 34790 45.7 27.553 1 42920 3035 28499 29218 50466 50466 0.062155970372714364 NPRQPLPASGL 11 Unmodified _NPRQPLPASGL_ 0 0 0 nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3 nc|ENSG00000157303|Q96L08-3|SUSD3 nc|ENSG00000157303|Q96L08-3|SUSD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3240966796875 2 575.32238 1148.63021 0.67178 0.00038649 -1.7759 -0.0010217 -1.1041 -0.00063521 575.8221857554313 43.8 0.40508 39.035 38.843 39.248 -4.7648 57 25 3 0 0 0 0.0056475 1 26650 26650 74.2 40.755 1 15252000 42921 6510 28500 29219 50467 50467 0.061836216289066215 NPRRGDIKL 9 Unmodified _NPRRGDIKL_ 0 0 0 nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ENSG00000174606|ENST00000366962|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8808288574219 3 356.880602 1067.61998 -0.0043199 -1.5417E-06 0.22708 8.1041E-05 0.22276 7.9499E-05 356.88068384705434 18.991 0.20979 18.997 18.935 19.144 0.0060463 16 10 2 0 0 0 0.29507 1 9649 9649 17.443 2.6044 1 3194100 42922 8440 28501 29220 50468 50468 0.08887058694313055 NPRRGDIKL 9 Unmodified _NPRRGDIKL_ 0 0 0 nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ENSG00000174606|ENST00000366962|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8815612792969 3 356.880602 1067.61998 1.8258 0.0006516 0.47856 0.00017079 2.3044 0.00082239 356.88079551310983 20.41 0.42729 17.717 17.494 17.921 -2.693 59 23 3 0 0 0 0.29507 2 10787 10787;10894 17.443 17.443 1 38888000 42923 8440 28501 29220 50469;50470 50469 0.08887058694313055 NPRRGDIKL 9 Unmodified _NPRRGDIKL_ 0 0 0 nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ENSG00000174606|ENST00000366962|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 nc|ENSG00000174606|Q5VTE6-2|ANGEL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 356.880602 1067.61998 -0.47667 -0.00017011 -0.37345 -0.00013328 -0.85012 -0.00030339 356.88074610424184 19.102 0.097446 19.102 19.032 19.13 0 0.069631 -0.00079742 NaN 17.443 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 571760 42924 8440 28501 29220 0.08887058694313055 NPRSIYTLQFY 11 Unmodified _NPRSIYTLQFY_ 0 0 0 ENST00000492857.1_1_6:16740003-16761659:-|nuORF ENST00000492857.1_1_6:16740003-16761659:-|nuORF ENST00000492857.1_1_6:16740003-16761659:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 701.3631591796875 2 701.361702 1400.70885 0.31525 0.0002211 0.26472 0.00018566 0.57996 0.00040676 701.361881221677 67.215 0.36703 66.733 66.547 66.914 -0.48218 49 16 4 0 0 0 0.66968 1 36804 36804 7.1017 3.5052 1 7424500 42925 14299 28502 29221 50471 50471 0.024524291433181133 NPRSIYTLQFY 11 Unmodified _NPRSIYTLQFY_ 0 0 0 ENST00000492857.1_1_6:16740003-16761659:-|nuORF ENST00000492857.1_1_6:16740003-16761659:-|nuORF ENST00000492857.1_1_6:16740003-16761659:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.3626708984375 2 701.361702 1400.70885 0.84458 0.00059236 0.44772 0.00031402 1.2923 0.00090637 701.361914353606 86.623 0.73382 80.447 80.037 80.77 -6.1757 110 39 4 0 0 0 0.047603 4 56945 56945;57069;57200;57318 51.415 29.878 1 56081000 42926 14299 28502 29221 50472;50473;50474;50475 50472 0.024524291433181133 NPRSVTLLI 9 Unmodified _NPRSVTLLI_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8110046386719 2 506.811116 1011.60768 0.47567 0.00024107 -0.19437 -9.851E-05 0.28129 0.00014256 506.81103075461937 60.686 0.38884 60.642 60.457 60.845 -0.04351 58 19 4 0 0 0 0.047788 1 33148 33148 45.7 7.524 1 91035000 42927 5791 28503 29222 50476 50476 0.10234022231293238 NPRSVTLLI 9 Unmodified _NPRSVTLLI_ 0 0 0 nc|ENSG00000146731|P40227-2|CCT6A;ENSG00000146731|ENST00000275603|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF nc|ENSG00000146731|P40227-2|CCT6A nc|ENSG00000146731|P40227-2|CCT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8112487792969 2 506.811116 1011.60768 0.36544 0.00018521 -0.1028 -5.2098E-05 0.26264 0.00013311 506.8109601928136 65.76 0.67288 59.584 59.304 59.977 -6.1757 107 39 4 0 0 0 0.078314 1 42728 42728 38.176 4.0731 1 160100000 42928 5791 28503 29222 50477 50477 0.10234022231293238 NPRVKAAAL 9 Unmodified _NPRVKAAAL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;nc|ENSG00000090054|O15269-2|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2903137207031 2 470.290351 938.566149 0.0041456 1.9497E-06 1.02 0.00047969 1.0241 0.00048164 470.2909194301201 20.147 0.1836 20.157 20.024 20.208 0.010553 14 8 2 0 0 0 0.10734 1 10240 10240 32.305 10.559 1 1328800 42929 1546 28504 29223 50478 50478 0.09440886262598269 NPRVKAAAL 9 Unmodified _NPRVKAAAL_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1;nc|ENSG00000090054|O15269-2|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.290283203125 2 470.290351 938.566149 0.43168 0.00020301 0.10022 4.7131E-05 0.53189 0.00025014 470.29042010370114 22.522 0.33265 19.743 19.554 19.887 -2.7784 46 18 3 0 0 0 0.015445 2 12151 12051;12151 68.081 32.037 1 18512000 42930 1546 28504 29223 50479;50480 50480 0.09440886262598269 NPSAAELVHF 10 Unmodified _NPSAAELVHF_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.775634765625 2 542.774731 1083.53491 0.59498 0.00032294 0.65096 0.00035333 1.2459 0.00067627 542.7750850724645 57.296 0.26323 57.296 57.156 57.419 0 14 11 2 0 0 0 0.14917 1 31903 31903 39.957 26.051 1 810690 42931 8657 28505 29224 50481 50481 -0.0035173156215932977 NPSARLTAL 9 Unmodified _NPSARLTAL_ 0 0 0 ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7725830078125 2 471.771991 941.529429 0.057211 2.699E-05 -0.092125 -4.3462E-05 -0.034914 -1.6471E-05 471.7719760998284 38.678 0.23718 38.391 38.283 38.52 -0.28687 18 11 2 0 0 0 0.025842 1 20377 20377 57.722 3.8892 1 3759800 42932 5167 28506 29225 50482 50482 0.056325896460293734 NPSARLTAL 9 Unmodified _NPSARLTAL_ 0 0 0 ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7725219726562 2 471.771991 941.529429 0.68071 0.00032114 -0.40398 -0.00019059 0.27673 0.00013055 471.7719693349742 43.056 0.29435 38.291 38.096 38.39 -4.7648 33 18 2 0 0 0 0.033587 2 26001 26001;26142 53.404 3.8497 1 15757000 42933 5167 28506 29225 50483;50484 50483 0.056325896460293734 NPSARLTAL 9 Unmodified _NPSARLTAL_ 0 0 0 ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1 ENSG00000139567|ENST00000388922|ACVRL1 ENSG00000139567|ENST00000388922|ACVRL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.771991 941.529429 0.59129 0.00027895 -1.5535 -0.00073288 -0.96218 -0.00045393 471.77179302437276 38.497 0.1097 38.497 38.426 38.535 0 0.10388 -0.0011123 NaN 57.722 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1257000 42934 5167 28506 29225 0.056325896460293734 NPSDLTVTSR 10 Unmodified _NPSDLTVTSR_ 0 0 0 nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2545776367188 2 545.280377 1088.5462 -0.47949 -0.00026145 -0.47399 -0.00025846 -0.95348 -0.00051991 545.280994480271 29.987 0.14775 29.987 29.867 30.015 0 12 6 3 0 0 0 0.22636 1 15575 15575 17.113 2.2746 1 951730 42935 5151 28507 29226 50485 50485 0.005470457413366603 NPSELDELM 9 Unmodified _NPSELDELM_ 0 0 0 ENSG00000140905|ENST00000315467|GCSH ENSG00000140905|ENST00000315467|GCSH ENSG00000140905|ENST00000315467|GCSH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2770385742188 2 524.23679 1046.45903 0.78774 0.00041296 2.0823 0.0010916 2.87 0.0015046 524.2376344535529 36.279 0.22104 36.279 36.167 36.388 0 14 10 2 0 0 0 0.21052 1 19222 19222 3.5965 0 1 6438600 42936 5280 28508 29227 50486 50486 -0.06234496524621136 NPSENRSLL 9 Unmodified _NPSENRSLL_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.271240234375 2 515.269813 1028.52507 NaN NaN NaN NaN NaN NaN NaN 30.728 1 30.728 30.228 31.228 0 0 0 0 0.16996 1 15976 15976 34.402 7.5181 1 42937 3923 28509 29228 50487 50487 0.011950804324669662 NPSERRFGIL 10 Unmodified _NPSERRFGIL_ 0 0 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8877563476562 3 396.887645 1187.64111 0.1518 6.0248E-05 0.021488 8.5281E-06 0.17329 6.8776E-05 396.88769577012215 42.822 0.27624 42.511 42.379 42.656 -0.31039 27 11 3 0 0 0 0.34249 1 22741 22741 21.799 9.6247 1 9748800 42938 4521 28510 29229 50488 50488 0.054790240031934445 NPSERRFGIL 10 Unmodified _NPSERRFGIL_ 0 0 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2221069335938 3 396.887645 1187.64111 0.21854 8.6735E-05 0.038698 1.5359E-05 0.25724 0.00010209 396.8876814743521 42.522 0.32597 42.513 42.318 42.644 -0.0088196 55 14 5 0 0 0 0.5933 1 22703 22703 10.315 0.77126 1 132460000 42939 4521 28510 29229 50489 50489 0.054790240031934445 NPSERRFGIL 10 Unmodified _NPSERRFGIL_ 0 0 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8276977539062 2 594.827829 1187.64111 0.2274 0.00013527 -0.1613 -9.5943E-05 0.066108 3.9323E-05 594.8277044502424 42.472 0.26154 42.464 42.36 42.622 -0.0088196 24 11 3 0 0 0 0.23548 1 22750 22750 31.268 19.628 1 19959000 42940 4521 28510 29229 50490 50490 0.054790240031934445 NPSERRFGIL 10 Unmodified _NPSERRFGIL_ 0 0 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8879089355469 3 396.887645 1187.64111 0.55675 0.00022097 -0.15835 -6.2846E-05 0.3984 0.00015812 396.8877945085458 46.663 0.33814 41.583 41.413 41.751 -5.0805 163 70 3 0 0 0 0.10406 1 28772 28772 33.821 14.195 1 154260000 42941 4521 28510 29229 50491 50491 0.054790240031934445 NPSERRFGIL 10 Unmodified _NPSERRFGIL_ 0 0 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MSMS AL20221201_MKP_PDAC_01 4 396.8880920410156 3 396.887645 1187.64111 NaN NaN NaN NaN NaN NaN NaN 46.893 1 41.813 41.313 42.313 -5.0805 0 0 0 0.80141 1 29042 29042 14.957 8.7653 1 42942 4521 28510 29229 50492 50492 0.054790240031934445 NPSFDGCWE 9 Unmodified _NPSFDGCWE_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;nc|ENSG00000158486|Q8TD57-2|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7011108398438 2 527.700374 1053.3862 0.59997 0.0003166 1.6648 0.00087849 2.2647 0.0011951 527.7012768092362 81.912 0.32095 81.417 81.236 81.557 -0.4952 19 11 2 0 0 0 0.54816 1 44848 44848 3.9444 1.6417 1 818880 42943 6592 28511 29230 50493 50493 -0.1383620552735465 NPSGNCRA 8 Unmodified _NPSGNCRA_ 0 0 0 nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.3564453125 1 818.357361 817.350085 -0.0027506 -2.251E-06 1.0043 0.0008219 1.0016 0.00081964 818.3576500504626 104.71 0.050812 104.71 104.69 104.74 0 32 19 2 0 0 0 0.80763 1 57613 57613 2.0598 1.3694 1 8106700 42944 5802 28512 29231 50494 50494 -0.06589617913550683 NPSGNCRA 8 Unmodified _NPSGNCRA_ 0 0 0 nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 818.357361 817.350085 -0.097472 -7.9767E-05 1.665 0.0013626 1.5675 0.0012828 818.3583859849534 104.75 0.055466 104.65 104.62 104.68 -0.096809 -0.029391 0.00022341 NaN 2.0598 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 6670800 42945 5802 28512 29231 -0.06589617913550683 NPSGVIQDF 9 Unmodified _NPSGVIQDF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.47119140625 1 976.473437 975.46616 0.87702 0.00085639 0.21324 0.00020822 1.0903 0.0010646 976.473197787455 54.516 0.24255 54.516 54.398 54.641 0 16 10 2 0 0 0 0.047788 1 30258 30258 45.7 22.963 1 952320 42946 1364 28513 29232 50495 50495 -0.02255395861868692 NPSISMIKKCI 11 Unmodified _NPSISMIKKCI_ 0 0 0 ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 ENSG00000108094|ENST00000374749|CUL2 ENSG00000108094|ENST00000374749|CUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8945617675781 3 411.894643 1232.6621 -0.55775 -0.00022974 0.69019 0.00028428 0.13243 5.4549E-05 411.8950530145114 19.166 0.1396 19.166 19.078 19.217 0 19 8 3 0 0 0 0.70705 1 9557 9557 3.5927 0.59743 1 2568500 42947 2546 28514 29233 50496 50496 0.0550752999620272 NPSISMIKKCI 11 Unmodified _NPSISMIKKCI_ 0 0 0 ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 ENSG00000108094|ENST00000374749|CUL2 ENSG00000108094|ENST00000374749|CUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8953247070312 3 411.894643 1232.6621 -0.091983 -3.7887E-05 1.7687 0.00072853 1.6767 0.00069064 411.8952424581701 19.102 0.20886 19.11 19.031 19.24 0.0078487 29 13 4 0 0 0 0.70705 1 9695 9695 3.5927 0.27303 1 2659000 42948 2546 28514 29233 50497 50497 0.0550752999620272 NPSLFVKIL 9 Unmodified _NPSLFVKIL_ 0 0 0 nc|ENSG00000117410|Q99437-2|ATP6V0B;ENSG00000117410|ENST00000472174|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B nc|ENSG00000117410|Q99437-2|ATP6V0B MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8184814453125 2 515.81841 1029.62227 1.0725 0.00055323 0.47755 0.00024633 1.5501 0.00079956 515.8186822433727 95.192 0.60522 89.017 88.625 89.23 -6.1757 78 33 3 0 0 0 0.015445 1 63158 63158 68.081 6.7232 1 24736000 42949 3303 28515 29234 50498 50498 0.10864094379417111 NPSNLLELY 9 Unmodified _NPSNLLELY_ 0 0 0 ENSG00000205765|ENST00000381647|RIMOC1;ENST00000505931.6_1_5:41907875-41908458:+|nuORF;ENST00000509976.1_1_5:41904493-41911314:+|nuORF ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7774658203125 2 531.776939 1061.53933 0.3393 0.00018043 0.46332 0.00024638 0.80262 0.00042682 531.777315205219 76.384 0.3139 76.384 76.2 76.514 0 23 12 2 0 0 0 0.047788 1 42452 42452 45.7 28.587 1 1217400 42950 10382 28516 29235 50499 50499 0.011017328607522359 NPSNLLELY 9 Unmodified _NPSNLLELY_ 0 0 0 ENSG00000205765|ENST00000381647|RIMOC1;ENST00000505931.6_1_5:41907875-41908458:+|nuORF;ENST00000509976.1_1_5:41904493-41911314:+|nuORF ENSG00000205765|ENST00000381647|RIMOC1 ENSG00000205765|ENST00000381647|RIMOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7774658203125 2 531.776939 1061.53933 -0.24156 -0.00012846 1.1571 0.00061534 0.91557 0.00048688 531.7774939185668 76.835 0.34251 76.356 76.177 76.52 -0.47945 37 15 3 0 0 0 0.020973 1 42083 42083 62.573 31.936 1 2381800 42951 10382 28516 29235 50500 50500 0.011017328607522359 NPSPPLMSY 9 Oxidation (M) _NPSPPLM(Oxidation (M))SY_ NPSPPLM(1)SY NPSPPLM(66)SY 0 0 1 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 ENSG00000179933|ENST00000319074|C14orf119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2362060546875 2 511.236593 1020.45863 0.19997 0.00010223 0.24892 0.00012726 0.44888 0.00022949 511.23649291823364 40.077 0.49902 40.077 39.853 40.352 0 47 24 2 0 0 0 0.017075 1 21555 21555 66.457 32.354 1 4150600 42952 8869 28517 29236 50501 50501 1495 -0.050778714537727865 NPSQYRFEHL 10 Unmodified _NPSQYRFEHL_ 0 0 0 ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MSMS AL20221201_MKP_PDAC_01 4 430.878662109375 3 430.879038 1289.61528 NaN NaN NaN NaN NaN NaN NaN 39.484 1 35.033 34.533 35.533 -4.4509 0 0 0 0.57388 1 23439 23439 24.957 9.2185 1 42953 8217 28518 29237 50502 50502 -0.017938702390893013 NPSRALPSL 9 Unmodified _NPSRALPSL_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7729187011719 2 477.771991 953.529429 0.56405 0.00026949 -0.57688 -0.00027562 -0.01283 -6.1297E-06 477.7718432114532 46.813 0.30941 41.733 41.61 41.919 -5.0805 65 51 2 0 0 0 0.012228 1 28927 28927 74.2 18.697 1 28399000 42954 4676 28519 29238 50503 50503 0.05080589646047429 NPSSAIVNF 9 Unmodified _NPSSAIVNF_ 0 0 0 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7436828613281 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 58.031 1 57.542 57.042 58.042 -0.48974 0 0 0 0.22437 1 31545 31545 29.082 2.1979 1 42955 4118 28520 29239 50504 50504 -0.004590919992438103 NPSSGMATV 9 Unmodified _NPSSGMATV_ 0 0 0 REV__ENSG00000187672|ENST00000288221|ERC2 REV__ENSG00000187672|ENST00000288221|ERC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.3927612304688 1 863.392744 862.385467 -0.88933 -0.00076784 -3.3328 -0.0028775 -4.2221 -0.0036453 863.3897390167123 32.844 0.27438 32.844 32.714 32.988 0 19 13 2 0 0 0 0.52067 1 17163 17163 6.2058 0.97511 1 1615900 + 42956 23649 28521 29240 50505 50505 -0.051230001764110966 NPSSMAVSF 9 Oxidation (M) _NPSSM(Oxidation (M))AVSF_ NPSSM(1)AVSF NPSSM(120)AVSF 0 0 1 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.416015625 1 955.418959 954.411682 -0.42073 -0.00040197 -1.8128 -0.001732 -2.2335 -0.0021339 955.4171603206057 40.448 0.1935 40.448 40.352 40.545 0 12 9 2 0 0 0 0.0047067 1 21746 21746 118.07 72.047 1 2702400 42957 2500 28522 29241 50506 50506 426 -0.06734731004917194 NPSSNFESM 9 Oxidation (M) _NPSSNFESM(Oxidation (M))_ NPSSNFESM(1) NPSSNFESM(61) 0 0 1 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7035522460938 2 514.703114 1027.39167 -0.16836 -8.6657E-05 0.87381 0.00044975 0.70545 0.0003631 514.7034419784916 25.412 0.34137 22.529 22.371 22.712 -2.8831 26 18 2 0 0 0 0.022193 1 13896 13896 61.357 38.209 1 3711100 42958 3814 28523 29242 50507 50507 672 -0.12092526735546016 NPSSNFESM 9 Unmodified _NPSSNFESM_ 0 0 0 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.2449951171875 2 506.705657 1011.39676 1.0418 0.0005279 -2.239 -0.0011345 -1.1971 -0.0006066 506.7047359279833 42.67 0.23404 37.985 37.807 38.041 -4.6846 20 15 2 0 0 0 0.16418 1 25732 25732 13.906 4.5586 1 7886000 42959 3814 28523 29243 50508 50508 -0.10848222872914448 NPSTPAQP 8 Unmodified _NPSTPAQP_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.3954467773438 1 811.394458 810.387182 -0.052735 -4.2789E-05 0.76134 0.00061775 0.7086 0.00057496 811.3950477349417 37.631 0.25345 37.631 37.51 37.764 0 32 12 3 0 0 0 0.44629 1 20118 20118 39.957 5.8549 1 5171900 + 42960 19740 28524 29244 50509 50509 -0.02559623096146879 NPSWASITY 9 Unmodified _NPSWASITY_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENST00000493606.1_1_22:43243518-43253221:-|nuORF;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ENST00000528072.1_1_11:47198065-47198404:-|nuORF;ENST00000526185.5_1_11:47197353-47198404:-|nuORF;ENST00000524727.5_1_11:47194869-47198404:-|nuORF;ENST00000527097.5_1_11:47193699-47198404:-|nuORF ENSG00000242247|ENST00000263245|ARFGAP3;ENSG00000149182|ENST00000524782|ARFGAP2 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7465209960938 2 519.748182 1037.48181 0.32871 0.00017085 -1.0598 -0.00055084 -0.7311 -0.00037999 519.7476720739437 63.753 0.42089 63.267 62.992 63.412 -0.48617 47 20 4 0 0 0 0.43463 1 34842 34842 10.824 2.2306 1 7510300 42961 10694;5988 28525 29245 50510 50510 -0.03543109344809636 NPTDAFTVF 9 Unmodified _NPTDAFTVF_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.243408203125 2 506.242732 1010.47091 0.52372 0.00026513 0.1671 8.4591E-05 0.69081 0.00034972 506.242716790268 75.272 0.41646 75.272 75.06 75.476 0 62 23 4 0 0 0 0.009483 1 41907 41907 81.89 35.869 1 3942000 42962 10721 28526 29246 50511 50511 -0.03390511719089773 NPTDAFTVF 9 Unmodified _NPTDAFTVF_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2428894042969 2 506.242732 1010.47091 0.19351 9.7964E-05 0.3864 0.00019561 0.57991 0.00029358 506.242859308924 75.734 0.48757 75.257 75.041 75.528 -0.47714 65 21 4 0 0 0 0.015445 2 41494 41397;41494 68.081 33.978 1 20626000 42963 10721 28526 29246 50512;50513 50513 -0.03390511719089773 NPTDAFTVF 9 Unmodified _NPTDAFTVF_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2433166503906 2 506.242732 1010.47091 0.36048 0.00018249 0.60722 0.0003074 0.9677 0.00048989 506.2429415124175 75.27 0.20609 75.316 75.203 75.409 0.045959 17 9 2 0 0 0 0.20428 1 41527 41527 22.736 8.8302 1 1532300 42964 10721 28526 29246 50514 50514 -0.03390511719089773 NPTDAFTVF 9 Unmodified _NPTDAFTVF_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2431945800781 2 506.242732 1010.47091 0.83173 0.00042106 -0.49161 -0.00024887 0.34012 0.00017218 506.24273811833757 83.119 0.69931 76.944 76.624 77.323 -6.1757 89 37 3 0 0 0 0.009483 2 54729 54595;54729 81.89 35.869 1 85075000 42965 10721 28526 29246 50515;50516 50516 -0.03390511719089773 NPTDAYLDAM 10 Oxidation (M) _NPTDAYLDAM(Oxidation (M))_ NPTDAYLDAM(1) NPTDAYLDAM(93) 0 0 1 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.739501953125 2 563.739696 1125.46484 0.50642 0.00028549 -1.0446 -0.00058889 -0.53819 -0.0003034 563.7391612295764 38.351 0.41582 38.351 38.204 38.62 0 85 31 4 0 0 0 0.0072789 2 20553 20439;20553 92.653 77.815 1 45841000 42966 3386 28527 29247 50517;50518 50518 600 -0.09287398012952508 NPTDAYLDAM 10 Oxidation (M) _NPTDAYLDAM(Oxidation (M))_ NPTDAYLDAM(1) NPTDAYLDAM(59) 0 0 1 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7409057617188 2 563.739696 1125.46484 0.60353 0.00034023 0.73833 0.00041623 1.3419 0.00075646 563.7398992351084 45.407 0.38754 40.452 40.254 40.641 -4.9549 58 26 3 0 0 0 0.047829 1 27807 27807 59.368 44.53 1 23333000 42967 3386 28527 29247 50519 50519 600 -0.09287398012952508 NPTDISYVY 9 Unmodified _NPTDISYVY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.253173828125 2 536.253297 1070.49204 -0.080071 -4.2938E-05 -0.5615 -0.00030111 -0.64157 -0.00034405 536.2531309348896 51.982 0.4183 51.982 51.71 52.129 0 56 18 4 0 0 0 0.015445 2 28791 28672;28791 68.081 53.499 1 46017000 42968 5183 28528 29248 50520;50521 50521 -0.04038546410242816 NPTDISYVY 9 Unmodified _NPTDISYVY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2532348632812 2 536.253297 1070.49204 0.37978 0.00020366 -2.8496 -0.0015281 -2.4699 -0.0013245 536.2520049058563 52.623 0.25433 52.19 52.044 52.298 -0.43367 28 12 3 0 0 0 0.014417 1 28419 28419 69.105 47.358 1 5205900 42969 5183 28528 29248 50522 50522 -0.04038546410242816 NPTDISYVY 9 Unmodified _NPTDISYVY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2536010742188 2 536.253297 1070.49204 0.8675 0.0004652 -1.2159 -0.00065201 -0.34836 -0.00018681 536.2531360453892 60.149 0.71396 54.035 53.814 54.528 -6.1147 101 37 4 0 0 0 0.011671 2 38716 38580;38716 75.761 54.014 1 147930000 42970 5183 28528 29248 50523;50524 50524 -0.04038546410242816 NPTDISYVY 9 Unmodified _NPTDISYVY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.253297 1070.49204 0.59432 0.0003187 -0.45047 -0.00024157 0.14385 7.7138E-05 536.2529085359886 52.259 0.18168 52.2 52.107 52.289 -0.058918 0.076232 0.00028344 NaN 69.105 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1174300 42971 5183 28528 29248 -0.04038546410242816 NPTDPLLAY 9 Unmodified _NPTDPLLAY_ 0 0 0 ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2585144042969 2 502.258382 1002.50221 0.40865 0.00020525 0.12825 6.4415E-05 0.5369 0.00026966 502.25833594949415 64.202 0.45366 64.202 63.953 64.407 0 56 19 4 0 0 0 0.0082353 2 35818 35717;35818 96.111 58.137 1 12905000 42972 5429 28529 29249 50525;50526 50526 0.0010606131498889226 NPTDPLLAY 9 Unmodified _NPTDPLLAY_ 0 0 0 ENSG00000142599|ENST00000400908|RERE;nc|ENSG00000142599|Q9P2R6-2|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2581787109375 2 502.258382 1002.50221 1.2075 0.0006065 0.019995 1.0043E-05 1.2275 0.00061654 502.25851560368034 71.178 0.36254 65.003 64.826 65.189 -6.1757 25 17 2 0 0 0 0.028475 1 46535 46535 56.177 10.156 1 24500000 42973 5429 28529 29249 50527 50527 0.0010606131498889226 NPTERVAAL 9 Unmodified _NPTERVAAL_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7695617675781 2 485.769448 969.524344 -0.61983 -0.00030109 0.89296 0.00043377 0.27313 0.00013268 485.76968444565205 32.076 0.18182 32.076 31.983 32.164 0 15 8 3 0 0 0 0.46501 1 16742 16742 9.3831 1.473 1 803920 42974 3241 28530 29250 50528 50528 0.03836285783427229 NPTGVVLLL 9 Unmodified _NPTGVVLLL_ 0 0 0 ENSG00000153721|ENST00000607772|CNKSR3;nc|ENSG00000288520|G9CGD6-3|CNK3;nc|ENSG00000288520|G9CGD6|CNK3;nc|ENSG00000288520|G9CGD6-2|CNK3;ENST00000433165.6_1_6:154727490-154754936:-|nuORF ENSG00000153721|ENST00000607772|CNKSR3 ENSG00000153721|ENST00000607772|CNKSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 925.5726318359375 1 925.571694 924.564418 0.32523 0.00030103 -0.64095 -0.00059325 -0.31572 -0.00029222 925.5710591466451 89.95 0.29259 89.448 89.324 89.617 -0.50171 24 15 2 0 0 0 0.0090524 1 49169 49169 85.642 49.514 1 702000 42975 6272 28531 29251 50529 50529 0.09911832453997249 NPTIVALVY 9 Unmodified _NPTIVALVY_ 0 0 0 nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 989.5674438476562 1 989.566609 988.559333 0.56253 0.00055666 -1.3428 -0.0013288 -0.7803 -0.00077216 989.566697988581 79.265 0.30049 78.779 78.619 78.92 -0.48596 19 12 2 0 0 0 0.091924 1 43392 43392 34.932 17.819 1 811390 42976 923 28532 29252 50530 50530 0.0645952859136969 NPTIVALVY 9 Unmodified _NPTIVALVY_ 0 0 0 nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7889404296875 2 495.286943 988.559333 0.8021 0.00039727 -0.14017 -6.9424E-05 0.66193 0.00032784 495.28701879027483 79.285 0.35077 78.799 78.596 78.947 -0.48595 25 14 3 0 0 0 0.16895 1 43391 43391 24.021 12.38 1 1248900 42977 923 28532 29252 50531 50531 0.0645952859136969 NPTIVALVY 9 Unmodified _NPTIVALVY_ 0 0 0 nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A nc|ENSG00000066027|Q15172-2|PPP2R5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2871704101562 2 495.286943 988.559333 1.2385 0.00061343 1.7377 0.00086068 2.9763 0.0014741 495.2881334806241 86.35 0.34145 80.174 79.997 80.338 -6.1757 29 18 2 0 0 0 0.0086722 1 56920 56920 88.954 50.98 1 9919700 42978 923 28532 29252 50532 50532 0.0645952859136969 NPTLNPLI 8 Unmodified _NPTLNPLI_ 0 0 0 ENSG00000221970|ENST00000641044|OR2A1;ENSG00000212807|ENST00000641810|OR2A42 ENSG00000221970|ENST00000641044|OR2A1 ENSG00000221970|ENST00000641044|OR2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.259765625 2 441.258185 880.501818 0.5702 0.00025161 1.7629 0.00077789 2.3331 0.0010295 441.25895806755744 48.669 0.25792 48.625 48.476 48.734 -0.04369 26 12 3 0 0 0 0.70294 1 26252 26252 16.942 0 1 3453200 42979 10415 28533 29253 50533 50533 0.05678686385817855 NPTPVPLEL 9 Unmodified _NPTPVPLEL_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2777099609375 2 490.276575 978.538597 0.50284 0.00024653 4.0691 0.001995 4.5719 0.0022415 490.2772903972407 74.025 0.40213 74.025 73.786 74.188 0 66 18 5 0 0 0 0.029718 1 41197 41197 55.503 24.866 1 2342900 42980 10310 28534 29254 50534 50534 0.04846938211710494 NPTSSSEFY 9 Unmodified _NPTSSSEFY_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2190551757812 2 516.219454 1030.42436 0.49634 0.00025622 -0.97841 -0.00050507 -0.48207 -0.00024885 516.2194295467411 36.966 0.29939 36.966 36.818 37.117 0 30 14 3 0 0 0 0.16226 1 19669 19669 26.884 11.036 1 2362700 42981 3923 28535 29255 50535 50535 -0.08963996341026359 NPTTVIEVY 9 Unmodified _NPTTVIEVY_ 0 0 0 ENST00000482459.1_1_11:1756512-1769373:-|nuORF;ENSG00000244242|ENST00000340134|IFITM10 ENST00000482459.1_1_11:1756512-1769373:-|nuORF ENST00000482459.1_1_11:1756512-1769373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.272216796875 2 518.27149 1034.52843 0.60274 0.00031238 0.71826 0.00037225 1.321 0.00068463 518.2718465254534 57.098 0.53383 57.098 56.813 57.346 0 79 23 5 0 0 0 0.0082661 2 31758 31758;31858 92.491 50.397 1 41371000 42982 10728 28536 29256 50536;50537 50536 0.012543304864948368 NPTTVIEVY 9 Unmodified _NPTTVIEVY_ 0 0 0 ENST00000482459.1_1_11:1756512-1769373:-|nuORF;ENSG00000244242|ENST00000340134|IFITM10 ENST00000482459.1_1_11:1756512-1769373:-|nuORF ENST00000482459.1_1_11:1756512-1769373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.271240234375 2 518.27149 1034.52843 0.32949 0.00017077 -1.0071 -0.00052195 -0.67761 -0.00035119 518.2707704949162 57.697 0.26449 57.207 57.066 57.331 -0.48974 23 12 3 0 0 0 0.032796 1 31345 31345 53.833 32.086 1 3016100 42983 10728 28536 29256 50538 50538 0.012543304864948368 NPTWSEEFS 9 Unmodified _NPTWSEEFS_ 0 0 0 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7337646484375 2 548.732729 1095.4509 0.23318 0.00012795 1.9294 0.0010587 2.1626 0.0011867 548.7337049261531 62.054 0.35016 62.054 61.907 62.257 0 38 16 3 0 0 0 0.36964 1 34607 34607 13.906 2.2658 1 11350000 + 42984 16818 28537 29257 50539 50539 -0.09300307449711909 NPTWSEEFS 9 Unmodified _NPTWSEEFS_ 0 0 0 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.732729 1095.4509 0.23318 0.00012795 1.9294 0.0010587 2.1626 0.0011867 548.7337049261531 62.054 0.35016 62.054 61.907 62.257 0 -0.048023 -0.00033689 NaN 13.906 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 11350000 + 42985 16818 28537 29257 -0.09300307449711909 NPTWSEEFS 9 Unmodified _NPTWSEEFS_ 0 0 0 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 REV__nc|ENSG00000164932|Q96CG8-3|CTHRC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.732729 1095.4509 0.54683 0.00030007 3.3837 0.0018568 3.9305 0.0021568 548.7339607606602 62.638 0.20315 62.15 62.04 62.243 -0.48764 0.048023 0.0012591 NaN 13.906 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2192000 + 42986 16818 28537 29257 -0.09300307449711909 NPVAKRHFVQ 10 Unmodified _NPVAKRHFVQ_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 ENSG00000171914|ENST00000636159|TLN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.9046936035156 3 399.228001 1194.66217 0.54724 0.00021848 0.96531 0.00038538 1.5126 0.00060385 399.22723546538947 57.213 0.21335 56.723 56.645 56.858 -0.48974 18 9 3 0 0 0 0.23946 1 31141 31141 3.5871 0 1 2679000 42987 8159 28538 29258 50540 50540 0.0726303410269793 NPVDDGKPVF 10 Unmodified _NPVDDGKPVF_ 0 0 0 ENSG00000112983|ENST00000254900|BRD8 ENSG00000112983|ENST00000254900|BRD8 ENSG00000112983|ENST00000254900|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2745971679688 2 544.274564 1086.53457 0.25635 0.00013952 -1.174 -0.00063896 -0.91762 -0.00049944 544.2738041314706 39.498 0.84947 39.498 39.282 40.131 0 136 41 6 0 0 0 0.48505 1 21547 21547 17.113 1.2657 1 426730000 42988 2934 28539 29259 50541 50541 -0.005231512820046191 NPVDEYQIF 9 Unmodified _NPVDEYQIF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7665405273438 2 562.766571 1123.51859 0.44023 0.00024775 0.08066 4.5393E-05 0.5209 0.00029314 562.7667192865392 68.829 0.31987 68.829 68.679 68.998 0 23 13 2 0 0 0 0.20428 2 38331 38331;38429 22.736 18.407 1 1506700 42989 10362;13403 28540 29260 50542;50543 50542 -0.03822857518935052 NPVDEYQIF 9 Unmodified _NPVDEYQIF_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENSG00000205339|ENST00000379719|IPO7;ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.768310546875 2 562.766571 1123.51859 0.18146 0.00010212 1.7165 0.000966 1.898 0.0010681 562.7674844112586 69.357 0.27798 68.878 68.742 69.02 -0.47903 17 11 2 0 0 0 0.52844 1 37919 37919 5.7319 1.4026 1 682030 42990 10362;13403 28540 29260 50544 50544 -0.03822857518935052 NPVDIVSTL 9 Unmodified _NPVDIVSTL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;ENST00000503635.1_1_17:47903366-47904308:+|nuORF;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.5250854492188 1 957.525138 956.517862 -0.099197 -9.4984E-05 -0.4747 -0.00045454 -0.5739 -0.00054952 957.5244440664701 69.75 0.30418 69.75 69.534 69.839 0 35 14 3 0 0 0 0.0082661 2 38891 38794;38891 92.491 50.652 1 4592000 42991 4827 28541 29261 50545;50546 50546 0.03786347832055981 NPVDIVSTL 9 Unmodified _NPVDIVSTL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7;ENST00000503635.1_1_17:47903366-47904308:+|nuORF;ENST00000513980.5_1_17:47892935-47904861:+|nuORF;ENST00000512616.5_1_17:47892935-47904861:+|nuORF nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 958.524658203125 1 957.525138 956.517862 0.022919 2.1945E-05 -1.0557 -0.0010109 -1.0328 -0.00098893 957.5233975309209 70.265 0.21529 69.786 69.653 69.869 -0.47903 19 9 3 0 0 0 0.1773 1 38382 38382 25.399 14.575 1 3130400 42992 4827 28541 29261 50547 50547 0.03786347832055981 NPVDTSRWPF 10 Unmodified _NPVDTSRWPF_ 0 0 0 REV__nc|ENSG00000144283|Q99569-2|PKP4 REV__nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8690185546875 3 406.86825 1217.58292 1.2017 0.00048892 0.32517 0.0001323 1.5268 0.00062122 406.86829819685425 32.338 0.41314 28.482 28.319 28.732 -3.8562 50 23 3 0 0 0 0.52659 1 18516 18516 14.957 0.55178 1 32126000 + 42993 20698 28542 29262 50548 50548 -0.017166576421232094 NPVDWKEKY 9 Unmodified _NPVDWKEKY_ 0 0 0 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5332641601562 3 393.532868 1177.57677 -0.089891 -3.5375E-05 0.45498 0.00017905 0.36509 0.00014368 393.5330312218133 31.155 0.26703 31.155 31.051 31.318 0 33 12 4 0 0 0 0.18144 1 16194 16194 29.437 26.365 1 6996500 42994 6223 28543 29263 50549 50549 -0.004911758736170668 NPVDWKEKY 9 Unmodified _NPVDWKEKY_ 0 0 0 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5318298339844 3 393.532868 1177.57677 0.33124 0.00013035 -1.5911 -0.00062614 -1.2598 -0.00049579 393.5319709979599 31.135 0.15016 31.033 30.959 31.109 -0.10269 10 5 3 0 0 0 0.38785 1 16184 16184 12.873 3.3286 1 2712600 42995 6223 28543 29263 50550 50550 -0.004911758736170668 NPVDWKEKY 9 Unmodified _NPVDWKEKY_ 0 0 0 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5342712402344 3 393.532868 1177.57677 1.1291 0.00044434 0.24452 9.6225E-05 1.3736 0.00054056 393.53313465027423 34.735 0.40009 30.639 30.438 30.838 -4.0951 56 23 3 0 0 0 0.14594 3 20020 19998;20020;20153 32.037 28.161 1 39731000 42996 6223 28543 29263 50551;50552;50553 50552 -0.004911758736170668 NPVDWKEKY 9 Unmodified _NPVDWKEKY_ 0 0 0 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.79638671875 2 589.795663 1177.57677 0.78698 0.00046416 0.27926 0.00016471 1.0662 0.00062887 589.7958529529969 34.706 0.34427 30.611 30.457 30.801 -4.0951 44 20 3 0 0 0 0.0085857 1 20026 20026 100.71 71.627 1 13548000 42997 6223 28543 29263 50554 50554 -0.004911758736170668 NPVDWKEQY 9 Unmodified _NPVDWKEQY_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3;ENST00000460132.5_1_7:100853286-100853899:-|nuORF ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7778930664062 2 589.77747 1177.54039 0.53387 0.00031486 -1.3966 -0.00082368 -0.86272 -0.00050881 589.7767789422297 43.749 0.52637 38.984 38.677 39.204 -4.7648 90 32 4 0 0 0 0.0086722 2 26681 26549;26681 88.954 65.805 1 70227000 42998 2424 28544 29264 50555;50556 50556 -0.041280527703293046 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7957763671875 2 602.79586 1203.57717 -0.40256 -0.00024266 1.4145 0.00085264 1.0119 0.00060998 602.7959025237101 40.548 0.16914 40.548 40.432 40.601 0 10 8 2 0 0 0 0.047268 1 21827 21827 51.488 29.741 1 3539200 42999 1437;3789;1275 28545 29265 50557 50557 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7977905273438 2 602.79586 1203.57717 0.65961 0.00039761 0.12538 7.5581E-05 0.785 0.00047319 602.7961516403918 42.728 0.49811 42.728 42.507 43.006 0 69 25 4 0 0 0 0.00064514 2 23074 23074;23190 87.123 69.219 1 26284000 43000 1437;3789;1275 28545 29265 50558;50559 50558 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7955322265625 2 602.79586 1203.57717 -0.037668 -2.2706E-05 -0.54833 -0.00033053 -0.586 -0.00035324 602.7956559152727 43.159 0.69403 43.159 42.889 43.583 0 44 34 2 0 0 0 0.010729 2 23440 23440;23556 67.081 43.291 1 4926400 43001 1437;3789;1275 28545 29265 50560;50561 50560 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7967529296875 2 602.79586 1203.57717 -0.55777 -0.00033622 0.34948 0.00021066 -0.20829 -0.00012556 602.7960645707509 17.588 0.54947 17.601 17.363 17.913 0.013865 255 120 3 0 0 0 0.15156 3 8749 8649;8749;8848 36.506 24.266 1 1763700 43002 1437;3789;1275 28545 29265 50562;50563;50564 50563 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7958374023438 2 602.79586 1203.57717 -0.032436 -1.9552E-05 0.057394 3.4597E-05 0.024958 1.5045E-05 602.7958725532899 41.34 0.3989 41.037 40.863 41.262 -0.30304 68 18 5 0 0 0 4.0562E-09 2 21946 21840;21946 115.06 82.609 1 145030000 43003 1437;3789;1275 28545 29265 50565;50566 50566 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.7957763671875 2 602.79586 1203.57717 0.080682 4.8635E-05 0.02049 1.2351E-05 0.10117 6.0986E-05 602.7958311374542 41.043 0.5491 41.041 40.81 41.359 -0.0017929 89 26 5 0 0 0 0.00017946 2 21953 21845;21953 92.201 64.978 1 187600000 43004 1437;3789;1275 28545 29265 50567;50568 50568 -0.01647800944442679 NPVEDKDAVAF 11 Unmodified _NPVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7968139648438 2 602.79586 1203.57717 -0.1607 -9.6872E-05 -0.96731 -0.00058309 -1.128 -0.00067996 602.7951000644813 46.528 2.3318 41.447 41.023 43.354 -5.0805 789 214 6 0 0 0 3.7051E-11 13 30026 28508;28645;28799;28931;29057;29194;29322;29457;29598;29745;29889;30026;30157 125.18 88.11 1 20680000000 43005 1437;3789;1275 28545 29265 50569;50570;50571;50572;50573;50574;50575;50576;50577;50578;50579;50580;50581 50580 -0.01647800944442679 NPVEFMCQAF 10 Carbamidomethyl (C) _NPVEFMC(Carbamidomethyl (C))QAF_ NPVEFMC(1)QAF NPVEFMC(100)QAF 0 1 0 ENSG00000155629|ENST00000339364|PIK3AP1;nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 ENSG00000155629|ENST00000339364|PIK3AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7689208984375 2 621.767734 1241.52091 -0.18017 -0.00011202 0.89138 0.00055423 0.71121 0.00044221 621.7684316865899 40.845 0.59378 40.845 40.687 41.281 0 142 48 4 0 0 0 0.0046054 3 22146 21926;22033;22146 99.755 72.126 1 127040000 43006 6398 28546 29266 50582;50583;50584 50584 635 -0.0901846837712128 NPVEFNTEVAT 11 Unmodified _NPVEFNTEVAT_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF;ENST00000507162.1_1_5:82837792-82840785:+|nuORF nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7935180664062 2 610.793318 1219.57208 0.61263 0.00037419 -0.92374 -0.00056422 -0.31111 -0.00019003 610.793005620513 36.427 0.21628 36.427 36.35 36.566 0 22 10 3 0 0 0 0.35681 1 19324 19324 23.79 0 1 4750300 43007 637 28547 29267 50585 50585 -0.0289210480705151 NPVEGKLIF 9 Unmodified _NPVEGKLIF_ 0 0 0 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7920837402344 2 508.792392 1015.57023 0.0056585 2.879E-06 0.3746 0.00019059 0.38026 0.00019347 508.7924993786448 58.159 0.26625 57.669 57.533 57.8 -0.48974 21 12 2 0 0 0 0.0090524 1 31613 31613 85.642 29.464 1 2851700 43008 6251 28548 29268 50586 50586 0.06306930965672564 NPVEGKLIF 9 Unmodified _NPVEGKLIF_ 0 0 0 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2943420410156 2 508.792392 1015.57023 0.68068 0.00034633 -0.77581 -0.00039473 -0.095126 -4.8399E-05 508.79206285287773 63.282 0.32525 57.106 56.98 57.306 -6.1757 22 18 2 0 0 0 0.06294 1 40949 40949 41.84 18.691 1 7979000 43009 6251 28548 29268 50587 50587 0.06306930965672564 NPVELKALY 9 Unmodified _NPVELKALY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7987060546875 2 523.797675 1045.5808 0.38966 0.0002041 -0.051975 -2.7224E-05 0.33769 0.00017688 523.7974198637701 52.499 0.34628 52.499 52.311 52.657 0 35 15 3 0 0 0 0.0019086 2 29013 29013;29128 133.05 76.875 1 20236000 43010 6155;16276;4022;14741 28549 29269 50588;50589 50588 0.05982913620096042 NPVELKALY 9 Unmodified _NPVELKALY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7962036132812 2 523.797675 1045.5808 0.23229 0.00012167 0.38859 0.00020354 0.62089 0.00032522 523.7978317252936 53.004 0.32203 52.552 52.381 52.703 -0.45173 47 16 4 0 0 0 0.0082475 2 28612 28612;28727 92.653 56.526 1 34572000 43011 6155;16276;4022;14741 28549 29269 50590;50591 50590 0.05982913620096042 NPVELKALY 9 Unmodified _NPVELKALY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7959594726562 2 523.797675 1045.5808 0.63484 0.00033253 -0.95314 -0.00049925 -0.3183 -0.00016672 523.7969797474661 52.661 0.26202 52.602 52.446 52.708 -0.058918 18 12 2 0 0 0 0.014417 1 28554 28554 69.105 38.468 1 2662300 43012 6155;16276;4022;14741 28549 29269 50592 50592 0.05982913620096042 NPVELKALY 9 Unmodified _NPVELKALY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7986450195312 2 523.797675 1045.5808 1.5161 0.00079413 -0.14198 -7.437E-05 1.3741 0.00071976 523.7975406237537 58.729 0.48066 52.655 52.387 52.868 -6.0745 72 26 3 0 0 0 0.0087807 2 37643 37518;37643 106.94 68.966 1 135910000 43013 6155;16276;4022;14741 28549 29269 50593;50594 50594 0.05982913620096042 NPVENIIRF 9 Unmodified _NPVENIIRF_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3063354492188 2 551.306198 1100.59784 0.72456 0.00039946 1.6097 0.00088742 2.3342 0.0012869 551.3055088259347 67.942 0.40508 67.46 67.189 67.594 -0.48219 54 18 5 0 0 0 0.011739 1 37100 37100 82.529 50.224 1 3091100 43014 10069 28550 29270 50595 50595 0.051568342258860866 NPVENIIRF 9 Unmodified _NPVENIIRF_ 0 0 0 ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX ENSG00000198252|ENST00000354586|STYX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3073120117188 2 551.306198 1100.59784 0.35285 0.00019453 -0.078665 -4.3368E-05 0.27419 0.00015116 551.3061405614046 67.436 0.31422 67.454 67.277 67.591 0.018036 26 15 2 0 0 0 0.0091809 1 37002 37002 92.653 33.975 1 2942800 43015 10069 28550 29270 50596 50596 0.051568342258860866 NPVEYSIVM 9 Oxidation (M) _NPVEYSIVM(Oxidation (M))_ NPVEYSIVM(1) NPVEYSIVM(61) 0 0 1 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2579956054688 2 534.257525 1066.5005 0.38331 0.00020479 -2.0201 -0.0010793 -1.6368 -0.00087448 534.2573842301423 49.09 0.58578 49.09 48.808 49.393 0 76 28 3 0 0 0 0.022193 1 27018 27018 61.357 32.871 1 45194000 43016 4845 28551 29271 50597 50597 879 -0.030093157652800073 NPVEYSIVM 9 Oxidation (M) _NPVEYSIVM(Oxidation (M))_ NPVEYSIVM(1) NPVEYSIVM(56) 0 0 1 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.25830078125 2 534.257525 1066.5005 0.72363 0.0003866 -0.55624 -0.00029717 0.16739 8.943E-05 534.2568783378424 49.639 0.42828 49.247 48.984 49.412 -0.3923 59 21 4 0 0 0 0.028475 2 26642 26642;26760 56.177 34.43 1 6758200 43017 4845 28551 29271 50598;50599 50598 879 -0.030093157652800073 NPVEYSIVM 9 Oxidation (M) _NPVEYSIVM(Oxidation (M))_ 0 0 1 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.257525 1066.5005 0.55625 0.00029718 0.43257 0.0002311 0.98882 0.00052828 534.2577118156149 49.308 0.28336 49.265 49.114 49.397 -0.04369 0.064153 0.0011472 NaN 61.357 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1044000 43018 4845 28551 29271 879 -0.030093157652800073 NPVEYSIVM 9 Unmodified _NPVEYSIVM_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2601928710938 2 526.260068 1050.50558 0.35083 0.00018463 1.4205 0.00074754 1.7713 0.00093217 526.2611789903611 65.217 0.37534 65.217 65.072 65.447 0 30 14 3 0 0 0 0.03568 1 36346 36346 52.268 35.326 1 1536000 43019 4845 28551 29272 50600 50600 -0.01765011902648439 NPVEYSIVM 9 Unmodified _NPVEYSIVM_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2606811523438 2 526.260068 1050.50558 -0.056367 -2.9663E-05 -0.21862 -0.00011505 -0.27499 -0.00014472 526.2598441811369 65.77 0.25917 65.286 65.101 65.36 -0.48428 18 10 3 0 0 0 0.05447 1 35885 35885 43.858 28.09 1 1901400 43020 4845 28551 29272 50601 50601 -0.01765011902648439 NPVFGRMY 8 Unmodified _NPVFGRMY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2447509765625 2 492.242012 982.469472 0.35274 0.00017363 1.8407 0.00090608 2.1935 0.0010797 492.2439404214406 65.462 0.37828 64.978 64.791 65.169 -0.48428 53 17 4 0 0 0 0.40035 2 35671 35671;35775 44.407 7.9409 1 13190000 43021 5021 28552 29273 50602;50603 50602 -0.022464242888304398 NPVFGRMY 8 Unmodified _NPVFGRMY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2449340820312 2 492.242012 982.469472 1.0773 0.00053031 1.0013 0.00049287 2.0786 0.0010232 492.2440262610839 71.814 0.49321 65.639 65.385 65.878 -6.1757 79 27 4 0 0 0 0.31612 2 47020 46867;47020 53.576 17.109 1 50347000 43022 5021 28552 29273 50604;50605 50605 -0.022464242888304398 NPVFGRMY 8 Unmodified _NPVFGRMY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.242012 982.469472 0.83665 0.00041183 3.3839 0.0016657 4.2205 0.0020775 492.2435638900311 65.059 0.26576 65.059 64.874 65.14 7.6294E-06 0.070946 -0.00035835 NaN 44.407 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1780400 43023 5021 28552 29273 -0.022464242888304398 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.4985961914062 1 961.498923 960.491647 0.0028095 2.7013E-06 -0.082343 -7.9173E-05 -0.079534 -7.6472E-05 961.4983807195825 64.925 0.63299 64.925 64.614 65.247 0 71 28 3 0 0 0 0.0031966 4 36207 36106;36108;36207;36319 125.62 87.473 1 93826000 43024 6746 28553 29274 50606;50607;50608;50609 50608 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2533874511719 2 481.2531 960.491647 0.19284 9.2804E-05 -0.57852 -0.00027842 -0.38568 -0.00018561 481.25273810831993 64.945 0.67468 64.945 64.672 65.347 0 107 29 5 0 0 0 0.008678 4 36124 36115;36124;36227;36335 88.904 60.417 1 180910000 43025 6746 28553 29274 50610;50611;50612;50613 50611 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 961.4985961914062 1 961.498923 960.491647 0.080357 7.7263E-05 0.53147 0.00051101 0.61183 0.00058827 961.498696865606 65.444 0.56248 64.96 64.727 65.289 -0.48428 75 25 4 0 0 0 0.0041763 3 35737 35632;35737;35849 120.45 86.348 1 57473000 43026 6746 28553 29274 50614;50615;50616 50615 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2528991699219 2 481.2531 960.491647 0.28871 0.00013894 -0.17843 -8.5871E-05 0.11028 5.3073E-05 481.2529898453225 65.467 0.49668 64.982 64.749 65.246 -0.48428 68 22 5 0 0 0 0.008678 3 35645 35645;35750;35875 88.904 56.598 1 94678000 43027 6746 28553 29274 50617;50618;50619 50617 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 961.4990234375 1 961.498923 960.491647 0.86686 0.00083348 -0.40338 -0.00038785 0.46348 0.00044564 961.4981249202827 65.008 0.30578 65.008 64.874 65.18 7.6294E-06 30 14 3 0 0 0 0.0067112 2 35583 35583;35689 112.59 82.368 1 5848500 43028 6746 28553 29274 50620;50621 50620 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2530822753906 2 481.2531 960.491647 0.63165 0.00030398 0.08437 4.0603E-05 0.71602 0.00034459 481.25299362419344 65.024 0.34318 65.024 64.836 65.18 1.5259E-05 44 16 3 0 0 0 0.013323 1 35602 35602 71.134 52.999 1 10917000 43029 6746 28553 29274 50622 50622 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2533874511719 2 481.2531 960.491647 1.1844 0.00056999 0.27698 0.0001333 1.4614 0.00070329 481.25307864019345 71.781 0.67656 65.605 65.243 65.919 -6.1757 147 36 5 0 0 0 0.008678 3 46903 46775;46903;47038 88.904 60.417 1 823650000 43030 6746 28553 29274 50623;50624;50625 50624 0.00982078660570096 NPVGGLLEY 9 Unmodified _NPVGGLLEY_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.4977416992188 1 961.498923 960.491647 0.96368 0.00092657 0.32709 0.00031449 1.2908 0.0012411 961.498608515389 71.781 0.61732 65.606 65.324 65.941 -6.1757 111 33 4 0 0 0 0.0067112 3 46791 46791;46916;47051 112.59 70.499 1 519740000 43031 6746 28553 29274 50626;50627;50628 50626 0.00982078660570096 NPVILNVLY 9 Unmodified _NPVILNVLY_ 0 0 0 ENSG00000183668|ENST00000270077|PSG9 ENSG00000183668|ENST00000270077|PSG9 ENSG00000183668|ENST00000270077|PSG9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.8082275390625 2 522.808042 1043.60153 NaN NaN NaN NaN NaN NaN NaN 87.631 1 87.127 86.627 87.627 -0.50423 0 0 0 0.7453 1 47934 47934 7.9102 1.187 1 43032 9175 28554 29275 50629 50629 0.08147503999771288 NPVINIASM 9 Oxidation (M) _NPVINIASM(Oxidation (M))_ NPVINIASM(1) NPVINIASM(57) 0 0 1 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7517700195312 2 487.75241 973.490267 NaN NaN NaN NaN NaN NaN NaN 47.623 1 47.623 47.123 48.123 0 0 0 0 0.050352 1 26079 26079 57.471 28.985 1 43033 7128 28555 29276 50630 50630 1227 0.0024612130017658274 NPVINIASM 9 Oxidation (M) _NPVINIASM(Oxidation (M))_ NPVINIASM(1) NPVINIASM(57) 0 0 1 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.752197265625 2 487.75241 973.490267 NaN NaN NaN NaN NaN NaN NaN 47.913 1 47.56 47.06 48.06 -0.3526 0 0 0 0.050352 1 25695 25695 57.471 40.529 1 43034 7128 28555 29276 50631 50631 1227 0.0024612130017658274 NPVINIASM 9 Oxidation (M) _NPVINIASM(Oxidation (M))_ NPVINIASM(1) NPVINIASM(100) 0 0 1 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7522583007812 2 487.75241 973.490267 NaN NaN NaN NaN NaN NaN NaN 48.098 1 47.745 47.245 48.245 -0.3526 0 0 0 0.0075532 1 25803 25803 104.8 64.842 1 43035 7128 28555 29276 50632 50632 1227 0.0024612130017658274 NPVKYSVD 8 Unmodified _NPVKYSVD_ 0 0 0 nc|ENSG00000113361|P55285-2|CDH6;ENSG00000113361|ENST00000265071|CDH6 nc|ENSG00000113361|P55285-2|CDH6 nc|ENSG00000113361|P55285-2|CDH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2383117675781 2 461.23745 920.460347 -0.4268 -0.00019686 2.1225 0.00097896 1.6957 0.0007821 461.23844338154396 34.77 0.24428 34.578 34.477 34.722 -0.19131 23 10 3 0 0 0 0.76266 1 18175 18175 11.64 0 1 5298200 43036 2961 28556 29277 50633 50633 -0.003064943735239467 NPVLETYIY 9 Unmodified _NPVLETYIY_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2871704101562 2 556.28714 1110.55973 0.30977 0.00017232 -0.83787 -0.0004661 -0.52811 -0.00029378 556.2864932392312 70.148 0.19908 70.148 70.109 70.308 0 15 9 2 0 0 0 0.45045 1 39098 39098 10.074 2.1638 1 1223400 43037 5855 28557 29278 50634 50634 0.008869035205634646 NPVLETYIY 9 Unmodified _NPVLETYIY_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.28857421875 2 556.28714 1110.55973 0.54817 0.00030494 -0.78825 -0.00043849 -0.24008 -0.00013355 556.2870079992705 70.738 0.22757 70.261 70.161 70.389 -0.47735 17 11 2 0 0 0 0.28023 1 38676 38676 18.146 10.857 1 1078900 43038 5855 28557 29278 50635 50635 0.008869035205634646 NPVLFEQSSTQ 11 Unmodified _NPVLFEQSSTQ_ 0 0 0 REV__nc|ENSG00000090097|P57723-2|PCBP4 REV__nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3060913085938 2 625.306592 1248.59863 0.21276 0.00013304 -0.12512 -7.8237E-05 0.087644 5.4804E-05 625.3069298613404 56.702 0.29152 56.702 56.495 56.786 0 18 12 2 0 0 0 0.58219 1 31517 31517 12.241 2.6967 1 1355700 + 43039 17851 28558 29279 50636 50636 -0.015724159157116446 NPVMSTVAF 9 Oxidation (M) _NPVM(Oxidation (M))STVAF_ NPVM(1)STVAF NPVM(50)STVAF 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2396240234375 2 491.239135 980.463718 0.2497 0.00012266 3.6971 0.0018162 3.9468 0.0019388 491.2402501095977 50.511 0.41553 50.511 50.308 50.724 0 55 19 4 0 0 0 0.039985 1 27813 27813 49.933 17.816 1 7428000 43040 5168;8329 28559 29280 50637 50637 947 -0.0272956759116596 NPVMSTVAF 9 Oxidation (M) _NPVM(Oxidation (M))STVAF_ NPVM(1)STVAF NPVM(50)STVAF 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2388305664062 2 491.239135 980.463718 NaN NaN NaN NaN NaN NaN NaN 50.254 1 50.254 49.754 50.754 0 0 0 0 0.074615 1 27697 27697 49.933 23.592 1 43041 5168;8329 28559 29280 50638 50638 947 -0.0272956759116596 NPVMSTVAF 9 Oxidation (M) _NPVM(Oxidation (M))STVAF_ NPVM(1)STVAF NPVM(59)STVAF 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2390441894531 2 491.239135 980.463718 0.94874 0.00046606 -0.47702 -0.00023433 0.47172 0.00023173 491.2388964315697 50.679 0.34599 50.265 50.092 50.438 -0.41351 39 16 3 0 0 0 0.024882 1 27263 27263 58.679 24.491 1 5314500 43042 5168;8329 28559 29280 50639 50639 947 -0.0272956759116596 NPVMSTVAF 9 Oxidation (M) _NPVM(Oxidation (M))STVAF_ NPVM(1)STVAF NPVM(59)STVAF 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2397766113281 2 491.239135 980.463718 0.46989 0.00023083 2.8576 0.0014038 3.3275 0.0016346 491.2404178354811 50.999 0.3409 50.586 50.438 50.778 -0.41351 46 16 3 0 0 0 0.024882 1 27448 27448 58.679 18.23 1 6410700 43043 5168;8329 28559 29280 50640 50640 947 -0.0272956759116596 NPVMSTVAF 9 Unmodified _NPVMSTVAF_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7434387207031 2 483.241678 964.468803 0.67156 0.00032452 -0.63962 -0.00030909 0.03194 1.5435E-05 483.2415717483961 64.004 0.2824 63.519 63.413 63.696 -0.48512 33 14 3 0 0 0 0.2001 1 34904 34904 23.148 2.2772 1 2003000 43044 5168;8329 28559 29281 50641 50641 -0.01485263728557129 NPVMSTVAF 9 Unmodified _NPVMSTVAF_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2420043945312 2 483.241678 964.468803 1.0912 0.0005273 -0.4047 -0.00019557 0.68648 0.00033173 483.241339798581 70.668 0.48253 64.493 64.244 64.726 -6.1757 39 25 2 0 0 0 0.015445 1 46142 46142 68.081 41.197 1 33871000 43045 5168;8329 28559 29281 50642 50642 -0.01485263728557129 NPVNYGRPY 9 Unmodified _NPVNYGRPY_ 0 0 0 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2694091796875 2 540.267073 1078.51959 NaN NaN NaN NaN NaN NaN NaN 29.041 1 29.041 28.541 29.541 0 0 0 0 0.025979 1 15027 15027 71.134 44.865 1 43046 366 28560 29282 50643 50643 -0.01652598359351032 NPVNYGRPY 9 Unmodified _NPVNYGRPY_ 0 0 0 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.266357421875 2 540.267073 1078.51959 0.45158 0.00024397 -0.48164 -0.00026021 -0.030061 -1.6241E-05 540.2671954857854 29.023 0.14 28.96 28.876 29.016 -0.062159 8 5 2 0 0 0 0.031062 1 15006 15006 54.774 32.037 1 3149300 43047 366 28560 29282 50644 50644 -0.01652598359351032 NPVNYGRPY 9 Unmodified _NPVNYGRPY_ 0 0 0 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 ENSG00000007520|ENST00000007390|TSR3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7986450195312 2 540.267073 1078.51959 0.45119 0.00024377 1.3158 0.0007109 1.767 0.00095466 540.2679226692967 32.766 0.34975 28.91 28.694 29.044 -3.8562 26 18 2 0 0 0 0.069627 1 18701 18701 37.974 5.1883 1 10445000 43048 366 28560 29282 50645 50645 -0.01652598359351032 NPVPVQSL 8 Unmodified _NPVPVQSL_ 0 0 0 REV__nc|ENSG00000172379|Q9HBZ2-2|ARNT2 REV__nc|ENSG00000172379|Q9HBZ2-2|ARNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2432861328125 2 427.242535 852.470518 0.71056 0.00030358 1.0273 0.00043892 1.7379 0.0007425 427.24281071005504 51.335 0.24476 51.335 51.167 51.412 0 14 10 2 0 0 0 0.46494 1 28356 28356 38.151 0.17718 1 1259900 + 43049 22647 28561 29283 50646 50646 0.0383811335171913 NPVQALSEF 9 Unmodified _NPVQALSEF_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7559509277344 2 502.756007 1003.49746 0.6419 0.00032272 0.48963 0.00024617 1.1315 0.00056888 502.75621936445987 67.233 0.70885 67.233 66.912 67.621 0 90 31 5 0 0 0 0.031062 3 37388 37388;37487;37588 54.774 38.926 1 25315000 43050 671 28562 29284 50647;50648;50649 50647 -0.004148228277585986 NPVQALSEF 9 Unmodified _NPVQALSEF_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7566528320312 2 502.756007 1003.49746 0.19501 9.8043E-05 0.97657 0.00049098 1.1716 0.00058902 502.7564713035911 67.734 0.57876 67.252 66.939 67.518 -0.48219 84 25 4 0 0 0 0.019303 2 37045 36933;37045 64.236 42.49 1 22593000 43051 671 28562 29284 50650;50651 50651 -0.004148228277585986 NPVQALSEF 9 Unmodified _NPVQALSEF_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF ENSG00000044115|ENST00000302763|CTNNA1 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7563781738281 2 502.756007 1003.49746 0.47147 0.00023703 0.78424 0.00039428 1.2557 0.00063131 502.7562471705436 67.331 0.35341 67.349 67.082 67.435 0.018036 31 17 2 0 0 0 0.07916 1 36899 36899 37.974 18.717 1 2437800 43052 671 28562 29284 50652 50652 -0.004148228277585986 NPVSINCGHSY 11 Carbamidomethyl (C) _NPVSINC(Carbamidomethyl (C))GHSY_ NPVSINC(1)GHSY NPVSINC(100)GHSY 0 1 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.275634765625 2 624.277312 1246.54007 -0.45093 -0.00028151 -0.31643 -0.00019754 -0.76736 -0.00047905 624.2770614288894 30.004 0.16845 30.004 29.888 30.057 0 17 7 3 0 0 0 1.3287E-06 1 15555 15555 103.42 71.114 1 3142600 43053 2885 28563 29285 50653 50653 296 -0.07333795761837791 NPVSINCGHSY 11 Carbamidomethyl (C) _NPVSINC(Carbamidomethyl (C))GHSY_ NPVSINC(1)GHSY NPVSINC(42)GHSY 0 1 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.2793579101562 2 624.277312 1246.54007 0.5845 0.00036489 1.2938 0.00080769 1.8783 0.0011726 624.2782563845107 30.013 0.13071 29.932 29.868 29.999 -0.080429 6 4 2 0 0 0 0.10451 1 15582 15582 41.956 16.556 1 1454800 43054 2885 28563 29285 50654 50654 296 -0.07333795761837791 NPVSINCGHSY 11 Carbamidomethyl (C) _NPVSINC(Carbamidomethyl (C))GHSY_ NPVSINC(1)GHSY NPVSINC(150)GHSY 0 1 0 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 ENSG00000112343|ENST00000357085|TRIM38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.27783203125 2 624.277312 1246.54007 0.8236 0.00051415 0.042378 2.6455E-05 0.86598 0.00054061 624.2777667236143 34.193 0.2972 30.208 30.082 30.379 -3.9853 42 16 3 0 0 0 4.588799999999999E-21 2 19651 19651;19780 151.48 119.17 1 24716000 43055 2885 28563 29285 50655;50656 50655 296 -0.07333795761837791 NPVSRLITY 9 Unmodified _NPVSRLITY_ 0 0 0 REV__ENSG00000198727|ENST00000361789|MT-CYB REV__ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8002319335938 2 531.800749 1061.58694 -0.43289 -0.00023021 0.026448 1.4065E-05 -0.40644 -0.00021614 531.800656226372 36.74 0.19897 36.491 36.405 36.604 -0.2497 20 8 3 0 0 0 0.095405 1 19275 19275 34.102 0 1 7050100 + 43056 24046 28564 29286 50657 50657 0.05861431851622001 NPVSWVESF 9 Unmodified _NPVSWVESF_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7562255859375 2 532.756007 1063.49746 0.60476 0.00032219 3.0868 0.0016445 3.6915 0.0019667 532.756481353837 82.131 0.37918 81.635 81.415 81.794 -0.4952 20 14 2 0 0 0 0.16226 1 44949 44949 26.884 11.036 1 1123400 43057 5186 28565 29287 50658 50658 -0.031748228277592716 NPVSWVESF 9 Unmodified _NPVSWVESF_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.822021484375 2 532.756007 1063.49746 1.28 0.00068195 -0.98866 -0.00052672 0.29138 0.00015523 532.7552597364821 90.722 0.67461 84.547 84.219 84.894 -6.1757 51 39 2 0 0 0 0.15672 1 59993 59993 26.884 11.036 1 13523000 43058 5186 28565 29287 50659 50659 -0.031748228277592716 NPVSWVQTF 9 Unmodified _NPVSWVQTF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2725830078125 2 539.271824 1076.5291 -0.47864 -0.00025812 0.69887 0.00037688 0.22023 0.00011876 539.2721525989296 77.072 0.57307 76.593 76.195 76.768 -0.47945 50 25 3 0 0 0 0.00856 2 42234 42135;42234 100.37 77.223 1 3777600 43059 4334 28566 29288 50660;50661 50661 -0.006108300738333128 NPVSWVQTF 9 Unmodified _NPVSWVQTF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.271484375 2 539.271824 1076.5291 0.14631 7.8903E-05 -0.29419 -0.00015865 -0.14788 -7.9747E-05 539.2716075376912 76.597 0.37701 76.647 76.447 76.824 0.05011 53 15 4 0 0 0 0.00856 2 42305 42204;42305 100.37 77.223 1 40883000 43060 4334 28566 29288 50662;50663 50663 -0.006108300738333128 NPVSWVQTF 9 Unmodified _NPVSWVQTF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.271728515625 2 539.271824 1076.5291 0.27389 0.0001477 -0.69125 -0.00037277 -0.41735 -0.00022507 539.2712107266904 84.528 0.62319 78.352 78.013 78.636 -6.1757 90 35 4 0 0 0 0.0082661 3 55559 55427;55559;55692 92.491 59.822 1 163320000 43061 4334 28566 29288 50664;50665;50666 50665 -0.006108300738333128 NPVTQLIMY 9 Oxidation (M) _NPVTQLIM(Oxidation (M))Y_ NPVTQLIM(1)Y NPVTQLIM(65)Y 0 0 1 ENSG00000213822|ENST00000396477|CEACAM18 ENSG00000213822|ENST00000396477|CEACAM18 ENSG00000213822|ENST00000396477|CEACAM18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7813110351562 2 547.781167 1093.54778 NaN NaN NaN NaN NaN NaN NaN 70.131 1 69.652 69.152 70.152 -0.47903 0 0 0 0.032808 1 38349 38349 65.235 41.214 1 43062 10460 28567 29289 50667 50667 1696 0.004749635057123669 NPVTSVFQY 9 Unmodified _NPVTSVFQY_ 0 0 0 ENSG00000066405|ENST00000183605|CLDN18 ENSG00000066405|ENST00000183605|CLDN18 ENSG00000066405|ENST00000183605|CLDN18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7637939453125 2 527.763832 1053.51311 1.1415 0.00060243 -1.8104 -0.00095549 -0.66897 -0.00035306 527.7630314390568 42.826 0.38029 42.826 42.586 42.966 0 56 19 4 0 0 0 0.23158 1 23154 23154 20.454 3.5113 1 25906000 43063 936 28568 29290 50668 50668 -0.011505363107289668 NPVVALGVY 9 Unmodified _NPVVALGVY_ 0 0 0 ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2 ENSG00000100867|ENST00000250383|DHRS2 ENSG00000100867|ENST00000250383|DHRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 931.5261840820312 1 931.524744 930.517468 0.42512 0.00039601 1.5839 0.0014755 2.009 0.0018715 931.5260682448924 67.426 0.25121 66.944 66.802 67.053 -0.48219 18 10 2 0 0 0 0.026094 1 36812 36812 57.471 40.529 1 1554900 43064 1882 28569 29291 50669 50669 0.04942972902847487 NPVVALGVY 9 Unmodified _NPVVALGVY_ 0 0 0 ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2 ENSG00000100867|ENST00000250383|DHRS2 ENSG00000100867|ENST00000250383|DHRS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2665710449219 2 466.26601 930.517468 0.41092 0.0001916 -1.1542 -0.00053815 -0.74325 -0.00034655 466.2650921411818 67.457 0.22932 66.975 66.866 67.096 -0.48218 15 9 2 0 0 0 0.016184 1 36837 36837 67.344 33.157 1 1812100 43065 1882 28569 29291 50670 50670 0.04942972902847487 NPVWIIMEL 9 Oxidation (M) _NPVWIIM(Oxidation (M))EL_ NPVWIIM(1)EL NPVWIIM(57)EL 0 0 1 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8002319335938 2 565.79936 1129.58417 1.0646 0.00060236 0.0043961 2.4873E-06 1.069 0.00060485 565.7996872617646 100.52 0.13464 94.34 94.254 94.389 -6.1757 15 7 3 0 0 0 0.026094 1 67248 67248 57.471 27.247 1 31388000 43066 7871 28570 29292 50671 50671 1334 0.024558404024446645 NPVWIIMEL 9 Unmodified _NPVWIIMEL_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;ENST00000519899.5_1_8:141756852-141774450:-|nuORF;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7953491210938 2 557.801903 1113.58925 0.79887 0.00044561 -3.1248 -0.001743 -2.3259 -0.0012974 557.8004607593704 101.86 0.1053 95.683 95.63 95.735 -6.1757 9 5 2 0 0 0 0.0095811 2 68372 68372;68394 81.613 53.984 1 13933000 43067 7871 28570 29293 50672;50673 50672 0.03700144265076233 NPVYFMVGFF 10 Unmodified _NPVYFMVGFF_ 0 0 0 REV__ENSG00000152104|ENST00000366956|PTPN14 REV__ENSG00000152104|ENST00000366956|PTPN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7949829101562 2 610.794078 1219.5736 0.1054 6.4379E-05 0.56557 0.00034545 0.67097 0.00040982 610.7942572288281 40.01 0.7205 40.01 39.575 40.295 0 99 35 4 0 0 0 0.66569 1 21432 21432 6.7232 2.3939 1 4370100 + 43068 21103 28571 29294 50674 50674 -0.027401422519915286 NPWDDKLIF 9 Unmodified _NPWDDKLIF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2921142578125 2 574.292756 1146.57096 NaN NaN NaN NaN NaN NaN NaN 76.875 1 76.875 76.375 77.375 0 0 0 0 0.82283 1 42735 42735 4.3292 1.334 1 43069 7898 28572 29295 50675 50675 0.003537256147183143 NPWDDKLIF 9 Unmodified _NPWDDKLIF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2930297851562 2 574.292756 1146.57096 -0.29149 -0.0001674 1.0043 0.00057678 0.71284 0.00040938 574.2932725589588 77.185 0.41891 76.702 76.517 76.935 -0.4826 67 18 5 0 0 0 0.0082995 2 42307 42210;42307 100.09 37.518 1 19423000 43070 7898 28572 29295 50676;50677 50677 0.003537256147183143 NPWDDKLIF 9 Unmodified _NPWDDKLIF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.2935180664062 2 574.292756 1146.57096 0.21123 0.00012131 0.29396 0.00016882 0.50519 0.00029013 574.2932055450709 76.699 0.34327 76.749 76.567 76.91 0.05011 35 14 3 0 0 0 0.013396 1 42349 42349 76.825 22.992 1 6804200 43071 7898 28572 29295 50678 50678 0.003537256147183143 NPWDDKLIF 9 Unmodified _NPWDDKLIF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000490632.1_1_2:111406757-111408294:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2931518554688 2 574.292756 1146.57096 1.1683 0.00067094 -0.082163 -4.7186E-05 1.0861 0.00062375 574.2927205448335 90.546 1.8373 84.371 83.308 85.145 -6.1757 261 106 4 0 0 0 0.0082295 8 59804 59409;59537;59673;59804;59933;60064;60202;60331 110.55 54.376 1 93135000 43072 7898 28572 29295 50679;50680;50681;50682;50683;50684;50685;50686 50682 0.003537256147183143 NPWDNKAVY 9 Unmodified _NPWDNKAVY_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;ENST00000529207.5_1_11:64898917-64899817:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7667846679688 2 553.766906 1105.51926 0.073478 4.069E-05 0.4899 0.00027129 0.56338 0.00031198 553.7666031836411 40.726 0.38824 40.726 40.471 40.859 0 64 29 4 0 0 0 0.01085 1 21914 21914 78.06 47.424 1 61572000 43073 6845 28573 29296 50687 50687 -0.029280180792056854 NPWDNKAVY 9 Unmodified _NPWDNKAVY_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;ENST00000529207.5_1_11:64898917-64899817:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7670288085938 2 553.766906 1105.51926 0.32257 0.00017863 0.54401 0.00030125 0.86658 0.00047988 553.7669135801958 41.178 0.4344 40.875 40.678 41.112 -0.30304 71 20 5 0 0 0 0.012668 2 21729 21729;21838 72.968 42.331 1 75714000 43074 6845 28573 29296 50688;50689 50688 -0.029280180792056854 NPWDNKAVY 9 Unmodified _NPWDNKAVY_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;ENST00000529207.5_1_11:64898917-64899817:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.7661743164062 2 553.766906 1105.51926 0.45104 0.00024977 0.36105 0.00019994 0.81209 0.00044971 553.7669330181046 40.842 0.28157 40.84 40.689 40.97 -0.0017929 36 13 4 0 0 0 0.0048194 1 21768 21768 117.76 87.124 1 8143900 43075 6845 28573 29296 50690 50690 -0.029280180792056854 NPWDNKAVY 9 Unmodified _NPWDNKAVY_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF;ENST00000529207.5_1_11:64898917-64899817:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7672729492188 2 553.766906 1105.51926 0.55753 0.00030874 0.39699 0.00021984 0.95452 0.00052858 553.7668002207188 46.232 0.7261 41.277 40.759 41.485 -4.9549 145 48 5 0 0 0 0.0061279 2 28407 28407;28542 114.19 83.55 1 785000000 43076 6845 28573 29296 50691;50692 50691 -0.029280180792056854 NPWSSSPLFL 10 Unmodified _NPWSSSPLFL_ 0 0 0 REV__ENST00000264645.11_1_17:38328022-38328133:+|nuORF REV__ENST00000264645.11_1_17:38328022-38328133:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2952880859375 2 574.292756 1146.57096 1.1683 0.00067094 -0.082163 -4.7186E-05 1.0861 0.00062375 574.2927205448335 90.546 1.8373 84.371 83.308 85.145 -6.1757 261 106 4 0 0 0 0.1552 1 59151 59151 53.833 6.2384 1 93135000 + 43077 25078 28574 29297 50693 50693 0.003537256147183143 NPWSTAIVAF 10 Unmodified _NPWSTAIVAF_ 0 0 0 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 ENSG00000162783|ENST00000367577|IER5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.287353515625 2 553.287474 1104.5604 0.93442 0.000517 -0.41203 -0.00022797 0.52239 0.00028903 553.2868111421368 99.252 0.24947 93.076 92.894 93.144 -6.1757 26 14 3 0 0 0 0.033218 1 66044 66044 66.457 26.499 1 31206000 43078 6915 28575 29298 50694 50694 0.012297429602540433 NPYEFALKF 9 Unmodified _NPYEFALKF_ 0 0 0 ENST00000491609.5_1_X:134031062-134033469:-|nuORF;ENST00000462060.1_1_X:134033250-134033469:-|nuORF;nc|ENSG00000101928|Q9UJG1-2|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1 ENST00000491609.5_1_X:134031062-134033469:-|nuORF ENST00000491609.5_1_X:134031062-134033469:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.78955078125 2 564.78985 1127.56515 0.89814 0.00050726 -1.6588 -0.00093689 -0.76068 -0.00042962 564.7887091078675 75.008 0.28194 74.531 74.348 74.63 -0.47714 24 11 3 0 0 0 0.10247 1 41045 41045 32.786 21.145 1 1946800 43079 2000 28576 29299 50695 50695 0.006466271030376447 NPYEFALKF 9 Unmodified _NPYEFALKF_ 0 0 0 ENST00000491609.5_1_X:134031062-134033469:-|nuORF;ENST00000462060.1_1_X:134033250-134033469:-|nuORF;nc|ENSG00000101928|Q9UJG1-2|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1 ENST00000491609.5_1_X:134031062-134033469:-|nuORF ENST00000491609.5_1_X:134031062-134033469:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7885131835938 2 564.78985 1127.56515 0.60361 0.00034091 -0.23427 -0.00013232 0.36934 0.0002086 564.7895874742676 74.423 0.31585 74.469 74.321 74.637 0.045959 38 13 4 0 0 0 0.0074582 1 41009 41009 110.55 78.247 1 12109000 43080 2000 28576 29299 50696 50696 0.006466271030376447 NPYEFALKF 9 Unmodified _NPYEFALKF_ 0 0 0 ENST00000491609.5_1_X:134031062-134033469:-|nuORF;ENST00000462060.1_1_X:134033250-134033469:-|nuORF;nc|ENSG00000101928|Q9UJG1-2|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1 ENST00000491609.5_1_X:134031062-134033469:-|nuORF ENST00000491609.5_1_X:134031062-134033469:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 564.79052734375 2 564.78985 1127.56515 NaN NaN NaN NaN NaN NaN NaN 86.231 1 80.056 79.556 80.556 -6.1757 0 0 0 0.011453 1 56839 56839 90.135 64.736 1 43081 2000 28576 29299 50697 50697 0.006466271030376447 NPYEFALKF 9 Unmodified _NPYEFALKF_ 0 0 0 ENST00000491609.5_1_X:134031062-134033469:-|nuORF;ENST00000462060.1_1_X:134033250-134033469:-|nuORF;nc|ENSG00000101928|Q9UJG1-2|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1 ENST00000491609.5_1_X:134031062-134033469:-|nuORF ENST00000491609.5_1_X:134031062-134033469:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 564.7901000976562 2 564.78985 1127.56515 NaN NaN NaN NaN NaN NaN NaN 86.442 1 80.266 79.766 80.766 -6.1757 0 0 0 0.01832 1 56988 56988 80.676 49.408 1 43082 2000 28576 29299 50698 50698 0.006466271030376447 NPYEQLPIY 9 Unmodified _NPYEQLPIY_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2864990234375 2 568.784764 1135.55498 0.54015 0.00030723 -0.59444 -0.00033811 -0.054294 -3.0882E-05 568.7842834166917 66.729 0.36636 66.729 66.512 66.878 0 40 16 3 0 0 0 0.029718 2 37163 37163;37263 71.134 13.662 1 5258300 43083 7598 28577 29300 50699;50700 50699 -0.007379806221706531 NPYEQLPIY 9 Unmodified _NPYEQLPIY_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.785888671875 2 568.784764 1135.55498 0.58437 0.00033238 1.1116 0.00063226 1.696 0.00096464 568.7851994538418 67.253 0.35012 66.77 66.634 66.985 -0.48218 32 15 3 0 0 0 0.15882 1 36711 36711 36.127 10.728 1 3902500 43084 7598 28577 29300 50701 50701 -0.007379806221706531 NPYHNEPGF 9 Unmodified _NPYHNEPGF_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7356567382812 2 537.735606 1073.45666 -0.57908 -0.00031139 0.32673 0.00017569 -0.25235 -0.0001357 537.7357696320381 30.229 0.59522 30.229 29.888 30.484 0 86 28 5 0 0 0 0.0083938 2 15736 15633;15736 108 81.656 1 36948000 43085 6634 28578 29301 50702;50703 50703 -0.07713164147367024 NPYHNEPGF 9 Unmodified _NPYHNEPGF_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.735606 1073.45666 -0.029104 -1.565E-05 1.6079 0.00086464 1.5788 0.00084899 537.7364668133317 29.977 0.2429 30.007 29.894 30.137 0.030106 -0.11087 0.001101 NaN 108 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 477760 43086 6634 28578 29301 -0.07713164147367024 NPYHVVILF 9 Unmodified _NPYHVVILF_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3094482421875 2 551.30821 1100.60187 0.8947 0.00049325 -0.18349 -0.00010116 0.71121 0.00039209 551.3081934434691 79.405 0.50375 78.916 78.66 79.164 -0.48933 87 21 5 0 0 0 0.026094 2 43415 43415;43517 57.471 25.354 1 45280000 43087 2355 28579 29302 50704;50705 50704 0.055589237196272734 NPYHVVILF 9 Unmodified _NPYHVVILF_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.308349609375 2 551.30821 1100.60187 NaN NaN NaN NaN NaN NaN NaN 79.653 1 79.164 78.664 79.664 -0.48932 0 0 0 0.50124 1 43630 43630 15.847 2.3393 1 43088 2355 28579 29302 50706 50706 0.055589237196272734 NPYHVVILF 9 Unmodified _NPYHVVILF_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3087768554688 2 551.30821 1100.60187 0.43885 0.00024194 -0.54066 -0.00029807 -0.10181 -5.6131E-05 551.3078338551569 78.791 0.99857 78.846 78.604 79.602 0.05497 115 38 5 0 0 0 0.010877 4 43435 43435;43537;43635;43902 77.984 45.867 1 512900000 43089 2355 28579 29302 50707;50708;50709;50710 50707 0.055589237196272734 NPYHVVILF 9 Unmodified _NPYHVVILF_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3076171875 2 551.30821 1100.60187 1.3638 0.00075188 -0.17863 -9.8477E-05 1.1852 0.0006534 551.308004115586 97.274 0.43713 91.099 90.895 91.332 -6.1757 79 24 5 0 0 0 0.012148 2 64375 64375;64500 74.423 42.306 1 1233000000 43090 2355 28579 29302 50711;50712 50711 0.055589237196272734 NPYHVVILF 9 Unmodified _NPYHVVILF_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 1102.270263671875 1 1101.60914 1100.60187 1.2333 0.0013586 -0.51403 -0.00056626 0.71922 0.0007923 1101.6084107467818 97.246 0.26196 91.071 90.96 91.221 -6.1757 24 14 2 0 0 0 0.0077963 1 64424 64424 109.63 69.672 1 29219000 43091 2355 28579 29302 50713 50713 0.055589237196272734 NPYKNLPIY 9 Unmodified _NPYKNLPIY_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3035278320312 2 561.303124 1120.5917 0.74599 0.00041872 0.2765 0.0001552 1.0225 0.00057393 561.3032274279782 50.87 1.2112 50.457 49.605 50.817 -0.41351 149 59 3 0 0 0 0.023164 1 27438 27438 60.39 25.457 1 19200000 43092 1800;4478 28580 29303 50714 50714 0.03622315994402925 NPYKNLPIY 9 Unmodified _NPYKNLPIY_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133026|P35580|MYH10 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3035888671875 2 561.303124 1120.5917 0.48962 0.00027483 -0.026157 -1.4682E-05 0.46346 0.00026014 561.302749245186 56.053 0.82645 50.132 49.587 50.413 -5.9211 96 48 3 0 0 0 0.00032477 1 35693 35693 147.83 93.058 1 111830000 43093 1800;4478 28580 29303 50715 50715 0.03622315994402925 NPYLYPYP 8 Unmodified _NPYLYPYP_ 0 0 0 ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1026.508544921875 1 1026.49311 1025.48583 1.3608 0.0013969 4.186 0.0042969 5.5468 0.0056938 1026.5010330063128 107.04 0.090508 100.86 100.79 100.88 -6.1757 22 15 2 0 0 0 0.80975 1 71623 71623 0.79363 0 1 2197300 43094 12788 28581 29304 50716 50716 -0.025890198510978735 NPYPGDVTKF 10 Unmodified _NPYPGDVTKF_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.783447265625 2 569.282389 1136.55022 0.1539 8.7614E-05 0.026 1.4801E-05 0.1799 0.00010242 569.2826228185904 43.944 0.12715 43.944 43.863 43.99 0 11 7 2 0 0 0 0.035244 1 23902 23902 65.474 38.59 1 20434000 43095 4895 28582 29305 50717 50717 -0.012588647649408813 NPYPGDVTKF 10 Unmodified _NPYPGDVTKF_ 0 0 0 nc|ENSG00000137073|Q5T6F2-2|UBAP2;ENSG00000137073|ENST00000379238|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 nc|ENSG00000137073|Q5T6F2-2|UBAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2833862304688 2 569.282389 1136.55022 1.004 0.00057155 -0.21964 -0.00012504 0.78434 0.00044651 569.2820357832796 49.782 0.43732 44.243 44.065 44.502 -5.5391 64 27 3 0 0 0 0.027278 2 31042 31042;31179 69.338 23.317 1 72250000 43096 4895 28582 29305 50718;50719 50718 -0.012588647649408813 NPYPRSHPY 9 Unmodified _NPYPRSHPY_ 0 0 0 nc|ENSG00000075426|P15408-3|FOSL2;nc|ENSG00000075426|P15408-2|FOSL2;ENSG00000075426|ENST00000264716|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 nc|ENSG00000075426|P15408-3|FOSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7733764648438 2 565.772522 1129.53049 -0.38953 -0.00022038 1.4304 0.00080927 1.0409 0.00058889 565.7724258451486 18.706 0.037388 18.73 18.706 18.743 0.023106 5 3 2 0 0 0 0.56345 1 9403 9403 3.5965 1.019 1 288500 43097 1158 28583 29306 50720 50720 -0.029091959850575222 NPYRDLQIY 9 Unmodified _NPYRDLQIY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2996215820312 2 591.301113 1180.58767 -0.63868 -0.00037765 1.1033 0.00065237 0.4646 0.00027472 591.3016992631132 48.671 0.36106 48.671 48.491 48.852 0 62 16 5 0 0 0 0.0082548 2 26677 26677;26787 96.367 37.688 1 58084000 43098 10015 28584 29307 50721;50722 50721 0.004602265006724338 NPYRDLQIY 9 Unmodified _NPYRDLQIY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2972412109375 2 591.301113 1180.58767 0.3802 0.00022482 0.19092 0.00011289 0.57113 0.00033771 591.3011464421643 49 0.4526 48.629 48.407 48.86 -0.37171 83 22 5 0 0 0 0.010301 2 26244 26244;26359 79.596 29.663 1 150830000 43099 10015 28584 29307 50723;50724 50723 0.004602265006724338 NPYRDLQIY 9 Unmodified _NPYRDLQIY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.30126953125 2 591.301113 1180.58767 0.21186 0.00012527 1.068 0.00063149 1.2798 0.00075676 591.3009754232841 48.698 0.27646 48.654 48.495 48.772 -0.04369 33 13 3 0 0 0 0.017075 2 26247 26247;26345 66.457 22.598 1 6482600 43100 10015 28584 29307 50725;50726 50725 0.004602265006724338 NPYRDLQIY 9 Unmodified _NPYRDLQIY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.301025390625 2 591.301113 1180.58767 0.64579 0.00038185 -0.63559 -0.00037583 0.010194 6.0279E-06 591.3006336069471 54.545 0.56052 48.68 48.383 48.943 -5.8653 124 34 5 0 0 0 0.021948 3 34496 34496;34638;34777 61.602 25.475 1 714660000 43101 10015 28584 29307 50727;50728;50729 50727 0.004602265006724338 NPYRETVCF 9 Carbamidomethyl (C) _NPYRETVC(Carbamidomethyl (C))F_ NPYRETVC(1)F NPYRETVC(96)F 0 1 0 ENSG00000189362|ENST00000409150|NEMP2;nc|ENSG00000189362|A6NFY4-2|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2719116210938 2 593.271498 1184.52844 0.25957 0.00015399 -0.86086 -0.00051072 -0.60129 -0.00035673 593.2712048405099 46.826 0.33678 41.746 41.618 41.955 -5.0805 72 52 2 0 0 0 0.0082548 2 29080 28924;29080 96.367 58.393 1 60869000 43102 9746 28585 29308 50730;50731 50731 892 -0.056439927851897664 NPYSGDLTKF 10 Unmodified _NPYSGDLTKF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2789306640625 2 571.279846 1140.54514 0.35671 0.00020378 0.10266 5.8649E-05 0.45937 0.00026243 571.2795826515144 47.096 0.32818 47.096 46.941 47.269 0 44 15 4 0 0 0 0.018486 2 25741 25741;25848 77.049 47.967 1 19639000 43103 5528 28586 29309 50732;50733 50732 -0.019511686275791362 NPYSGDLTKF 10 Unmodified _NPYSGDLTKF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2813720703125 2 571.279846 1140.54514 0.81426 0.00046517 -0.81569 -0.00046599 -0.0014331 -8.1871E-07 571.2800276656028 47.419 0.3042 47.067 46.919 47.223 -0.3526 48 14 4 0 0 0 0.0013105 2 25383 25383;25486 112.04 75.914 1 27966000 43104 5528 28586 29309 50734;50735 50734 -0.019511686275791362 NPYSGDLTKF 10 Unmodified _NPYSGDLTKF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7816772460938 2 571.279846 1140.54514 0.81121 0.00046343 0.17231 9.8438E-05 0.98352 0.00056187 571.2798577635302 53.091 0.39993 47.287 47.067 47.467 -5.8042 61 22 3 0 0 0 0.022716 2 33464 33464;33587 73.196 44.115 1 143010000 43105 5528 28586 29309 50736;50737 50736 -0.019511686275791362 NPYSNDILEY 10 Unmodified _NPYSNDILEY_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;nc|ENSG00000106477|Q9BYV8-5|CEP41;ENST00000480206.1_1_7:130040368-130041766:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2801513671875 2 614.280043 1226.54553 0.67308 0.00041346 -0.98921 -0.00060765 -0.31614 -0.0001942 614.2795049728526 59.968 0.4035 59.968 59.796 60.199 0 49 18 4 0 0 0 0.0022539 2 33488 33382;33488 107.19 84.451 1 28050000 43106 2430 28587 29310 50738;50739 50739 -0.05867793698371315 NPYSNDILEY 10 Unmodified _NPYSNDILEY_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;nc|ENSG00000106477|Q9BYV8-5|CEP41;ENST00000480206.1_1_7:130040368-130041766:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.279296875 2 614.280043 1226.54553 0.48845 0.00030005 0.051786 3.1811E-05 0.54024 0.00033186 614.2800870730981 67.8 0.4861 61.625 61.385 61.871 -6.1757 62 27 3 0 0 0 0.003386 2 44258 44112;44258 103.42 74.338 1 39903000 43107 2430 28587 29310 50740;50741 50741 -0.05867793698371315 NPYTEFKEF 9 Unmodified _NPYTEFKEF_ 0 0 0 ENSG00000142634|ENST00000375980|EFHD2 ENSG00000142634|ENST00000375980|EFHD2 ENSG00000142634|ENST00000375980|EFHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.773681640625 2 587.774396 1173.53424 0.30176 0.00017737 -0.39075 -0.00022967 -0.088984 -5.2302E-05 587.77403062547 52.935 0.2199 52.935 52.82 53.039 0 18 10 2 0 0 0 0.05483 1 29315 29315 43.772 14.691 1 2618600 43108 5435 28588 29311 50742 50742 -0.04558571001848577 NPYVEAEYF 9 Unmodified _NPYVEAEYF_ 0 0 0 nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5;ENST00000531823.5_1_8:38125951-38126678:-|nuORF;nc|ENSG00000147535|Q8NEB5-4|PLPP5;ENST00000528814.1_1_8:38126264-38126717:-|nuORF nc|ENSG00000147535|Q8NEB5-2|PLPP5;ENST00000528814.1_1_8:38126264-38126717:-|nuORF ENST00000528814.1_1_8:38126264-38126717:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2517700195312 2 566.253297 1130.49204 NaN NaN NaN NaN NaN NaN NaN 62.231 1 62.231 61.731 62.731 0 0 0 0 0.32177 1 34706 34706 24.021 15.427 1 43109 5859;14866 28589 29312 50743 50743 -0.0679854641023212 NPYYGFQAF 9 Unmodified _NPYYGFQAF_ 0 0 0 nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7516479492188 2 553.750724 1105.4869 0.81627 0.00045201 0.15408 8.5321E-05 0.97035 0.00053733 553.7509101490667 72.722 0.23958 72.246 72.124 72.363 -0.47588 17 10 2 0 0 0 0.30562 1 39828 39828 16.942 12.186 1 835230 43110 6650 28590 29313 50744 50744 -0.06162805482199474 NPYYGLFEY 9 Unmodified _NPYYGLFEY_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2644653320312 2 583.263665 1164.51278 0.83215 0.00048536 1.0014 0.0005841 1.8336 0.0010695 583.2642372127647 80.425 0.44041 79.933 79.687 80.127 -0.49137 51 17 4 0 0 0 0.016184 2 44079 43975;44079 67.344 54.812 1 6741200 43111 265;5050;714;1008 28591 29314 50745;50746 50746 -0.06289956030559551 NPYYGLFEY 9 Unmodified _NPYYGLFEY_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.263671875 2 583.263665 1164.51278 1.0309 0.0006013 0.015052 8.7794E-06 1.046 0.00061008 583.2635859357673 87.595 0.56149 81.419 81.112 81.673 -6.1757 71 30 3 0 0 0 0.026094 2 57647 57647;57779 57.471 38.214 1 54869000 43112 265;5050;714;1008 28591 29314 50747;50748 50747 -0.06289956030559551 NPYYGLFEY 9 Unmodified _NPYYGLFEY_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.263665 1164.51278 0.15443 9.0076E-05 0.13438 7.8381E-05 0.28882 0.00016846 583.2637890170417 79.893 0.25459 79.893 79.775 80.03 0 -0.0034799 -0.00057453 NaN 67.344 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1204300 43113 265;5050;714;1008 28591 29314 -0.06289956030559551 NPYYGLFEY 9 Unmodified _NPYYGLFEY_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000138411|ENST00000644978|HECW2;nc|ENSG00000049759|Q96PU5-9|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 583.263665 1164.51278 0.58769 0.00034278 -0.27994 -0.00016328 0.30775 0.0001795 583.2630274953681 79.808 0.34734 79.863 79.72 80.067 0.05497 -0.033334 -0.0010579 NaN 67.344 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2486000 43114 265;5050;714;1008 28591 29314 -0.06289956030559551 NPYYGLFQY 9 Unmodified _NPYYGLFQY_ 0 0 0 ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;ENSG00000108854|ENST00000262435|SMURF2;nc|ENSG00000198742|Q9HCE7|SMURF1 ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENST00000582081.5_1_17:62541968-62590137:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7726440429688 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 78.722 1 78.236 77.736 78.736 -0.48596 0 0 0 0.080768 1 43117 43117 48.346 26.599 1 43115 2615 28592 29315 50749 50749 -0.04646249793654533 NPYYGLFQY 9 Unmodified _NPYYGLFQY_ 0 0 0 ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;ENSG00000108854|ENST00000262435|SMURF2;nc|ENSG00000198742|Q9HCE7|SMURF1 ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENST00000582081.5_1_17:62541968-62590137:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7724609375 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 78.178 1 78.23 77.73 78.73 0.052452 0 0 0 0.029091 1 43167 43167 67.344 53.438 1 43116 2615 28592 29315 50750 50750 -0.04646249793654533 NPYYGLFQY 9 Unmodified _NPYYGLFQY_ 0 0 0 ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;ENSG00000108854|ENST00000262435|SMURF2;nc|ENSG00000198742|Q9HCE7|SMURF1 ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENST00000582081.5_1_17:62541968-62590137:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 582.77294921875 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 85.721 1 79.545 79.045 80.045 -6.1757 0 0 0 0.014922 1 56478 56478 85.357 54.72 1 43117 2615 28592 29315 50751 50751 -0.04646249793654533 NPYYGLFQY 9 Unmodified _NPYYGLFQY_ 0 0 0 ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000198742|ENST00000361368|SMURF1;ENSG00000108854|ENST00000262435|SMURF2;nc|ENSG00000198742|Q9HCE7|SMURF1 ENST00000582081.5_1_17:62541968-62590137:-|nuORF ENST00000582081.5_1_17:62541968-62590137:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 582.7720336914062 2 582.771657 1163.52876 NaN NaN NaN NaN NaN NaN NaN 85.901 1 79.726 79.226 80.226 -6.1757 0 0 0 0.035065 1 56606 56606 64.236 40.216 1 43118 2615 28592 29315 50752 50752 -0.04646249793654533 NQCPGCWPAY 10 Unmodified _NQCPGCWPAY_ 0 0 0 REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7259521484375 2 569.725869 1137.43719 0.85728 0.00048841 -0.25132 -0.00014318 0.60596 0.00034523 569.725795759452 75.606 0.23265 75.129 74.98 75.212 -0.47713 23 11 3 0 0 0 0.6606 1 41373 41373 7.2892 2.7604 1 1654500 + 43119 17604 28593 29316 50753 50753 -0.12603579754159 NQCRRGDCFNR 11 Unmodified _NQCRRGDCFNR_ 0 0 0 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 REV__nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.8719787597656 3 456.871783 1367.59352 -0.067913 -3.1028E-05 1.0137 0.00046312 0.94575 0.00043209 456.87196491370855 25.515 0.26652 22.632 22.464 22.73 -2.8831 37 14 3 0 0 0 0.71341 1 13920 13920 1.2148 0 1 5064700 + 43120 17565 28594 29317 50754 50754 -0.07557321530975969 NQDEDFIQRQ 10 Unmodified _NQDEDFIQRQ_ 0 0 0 REV__nc|ENSG00000154144|Q3YBR2-2|TBRG1 REV__nc|ENSG00000154144|Q3YBR2-2|TBRG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 431.8906860351562 3 431.533707 1291.57929 0.79591 0.00034346 -2.2627 -0.00097644 -1.4668 -0.00063297 431.53256748023415 22.307 0.32019 19.572 19.394 19.714 -2.7348 36 16 3 0 0 0 0.23996 1 11908 11908 1.5923 1.433 1 8155500 + 43121 29714 28595 29318 50755 50755 -0.05483372206617787 NQDGDTYKIL 10 Unmodified _NQDGDTYKIL_ 0 0 0 REV__ENSG00000129317|ENST00000344862|PUS7L REV__ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5288391113281 3 389.527782 1165.56152 0.27288 0.00010629 0.39159 0.00015254 0.66447 0.00025883 389.528097225077 39.995 0.31698 40 39.811 40.128 0.0050545 50 14 5 0 0 0 0.69917 1 21375 21375 1.4551 0.67859 1 10073000 + 43122 19660 28596 29319 50756 50756 -0.014640874614542554 NQDVYMKTT 9 Unmodified _NQDVYMKTT_ 0 0 0 nc|ENSG00000186638|Q5T7B8-4|KIF24;ENSG00000186638|ENST00000402558|KIF24 nc|ENSG00000186638|Q5T7B8-4|KIF24 nc|ENSG00000186638|Q5T7B8-4|KIF24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1296997070312 3 367.174463 1098.50156 NaN NaN NaN NaN NaN NaN NaN 102.48 1 102.48 101.98 102.98 0 0 0 0 0.84737 1 56516 56516 0.96228 0.55401 1 43123 9490 28597 29320 50757 50757 -0.04375101396362879 NQEIVIEISF 10 Unmodified _NQEIVIEISF_ 0 0 0 nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000553041.5_1_12:96414526-96429297:-|nuORF nc|ENSG00000111144|P09960-3|LTA4H nc|ENSG00000111144|P09960-3|LTA4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.31640625 2 596.316428 1190.6183 0.64164 0.00038262 0.32504 0.00019383 0.96669 0.00057645 596.3167067545372 68.196 0.18666 67.714 67.637 67.823 -0.48218 13 8 2 0 0 0 0.70053 1 37288 37288 5.2969 0.39987 1 1249800 43124 2763 28598 29321 50758 50758 0.030619600950331005 NQEKANLFIDY 11 Unmodified _NQEKANLFIDY_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.7547607421875 2 677.835517 1353.65648 0.25671 0.00017401 1.2541 0.00085005 1.5108 0.0010241 677.8358508537134 49.354 0.82185 49.354 48.952 49.773 0 91 38 3 0 0 0 0.29807 1 26993 26993 8.9762 2.3459 1 6948100 + 43125 20303 28599 29322 50759 50759 -0.006201539902804143 NQEKANLFIDY 11 Unmodified _NQEKANLFIDY_ 0 0 0 REV__ENSG00000138095|ENST00000260665|LRPPRC REV__ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.836669921875 2 677.835517 1353.65648 0.50482 0.00034218 0.14798 0.0001003 0.6528 0.00044249 677.8355918045504 56.113 1.0512 50.136 49.548 50.599 -5.9769 168 61 3 0 0 0 0.13384 4 35867 35464;35589;35725;35867 40.239 16.566 1 92674000 + 43126 20303 28599 29322 50760;50761;50762;50763 50763 -0.006201539902804143 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2734375 2 533.271824 1064.5291 0.73063 0.00038962 -1.2474 -0.00066521 -0.51679 -0.00027559 533.2710978449843 49.633 0.33242 49.241 49.098 49.431 -0.3923 32 16 2 0 0 0 0.085319 1 26660 26660 36.506 11.107 1 5665100 43127 1213;3902 28600 29323 50764 50764 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.271824 1064.5291 0.58976 0.0003145 -1.0549 -0.00056253 -0.4651 -0.00024803 533.2713730233238 49.273 0.24499 49.273 49.128 49.373 0 0.031124 0.00015568 NaN 36.506 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1719100 43128 1213;3902 28600 29323 -0.0005883007379452465 NQFPGFKEV 9 Unmodified _NQFPGFKEV_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.271824 1064.5291 0.50411 0.00026883 -1.0602 -0.00056538 -0.55609 -0.00029655 533.2712993971609 49.255 0.099735 49.211 49.155 49.255 -0.04369 -0.030383 0.00014998 NaN 36.506 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 471240 43129 1213;3902 28600 29323 -0.0005883007379452465 NQFQKAPA 8 Unmodified _NQFQKAPA_ 0 0 0 ENSG00000197919|ENST00000276927|IFNA1;ENSG00000233816|ENST00000610660|IFNA13 ENSG00000197919|ENST00000276927|IFNA1 ENSG00000197919|ENST00000276927|IFNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2385864257812 2 452.237784 902.461016 NaN NaN NaN NaN NaN NaN NaN 52.904 1 52.904 52.404 53.404 0 0 0 0 0.97444 1 29294 29294 2.8892 0 1 43130 10022 28601 29324 50765 50765 0.005883450661826828 NQFSWREEPR 10 Unmodified _NQFSWREEPR_ 0 0 0 REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.3224487304688 2 674.823275 1347.632 -0.54623 -0.00036861 -3.1967 -0.0021572 -3.7429 -0.0025258 674.822446008891 33.47 0.12437 33.47 33.365 33.489 0 9 7 2 0 0 0 0.038363 1 17537 17537 63.961 12.331 1 11179000 + 43131 27482 28602 29325 50766 50766 -0.027913693531672834 NQFSWREEPR 10 Unmodified _NQFSWREEPR_ 0 0 0 REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.8212890625 2 674.823275 1347.632 0.51977 0.00035075 -1.2251 -0.00082674 -0.70536 -0.00047599 674.8224277922296 47.75 0.27361 47.75 47.623 47.897 0 32 12 4 0 0 0 0.57893 1 26154 26154 12.241 1.4411 1 3780200 + 43132 27482 28602 29325 50767 50767 -0.027913693531672834 NQHCNTCTDL 10 Unmodified _NQHCNTCTDL_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8212890625 3 383.486824 1147.43864 -0.4008 -0.0001537 0.13178 5.0535E-05 -0.26902 -0.00010317 383.4865595423278 44.711 0.2364 44.711 44.552 44.788 0 18 12 2 0 0 0 0.69064 1 24319 24319 1.9064 0 1 22430000 + 43133 24045 28603 29326 50768 50768 -0.12917990456048756 NQIALNLGY 9 Unmodified _NQIALNLGY_ 0 0 0 REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3 REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7725524902344 2 503.271824 1004.5291 1.0904 0.00054875 0.89544 0.00045065 1.9858 0.0009994 503.2739198168242 88.675 0.80377 82.5 82.079 82.882 -6.1757 114 44 4 0 0 0 0.2001 1 58438 58438 23.148 3.7094 1 40658000 + 43134 21145 28604 29327 50769 50769 0.027011699261720423 NQIIDALIEV 10 Unmodified _NQIIDALIEV_ 0 0 0 REV__ENST00000443722.5_1_7:102939135-102952660:+|nuORF REV__ENST00000443722.5_1_7:102939135-102952660:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3185424804688 2 564.318971 1126.62339 0.29748 0.00016787 0.13567 7.6559E-05 0.43314 0.00024443 564.3191008418976 84.006 0.36597 84.006 83.816 84.182 0 50 18 4 0 0 0 0.70053 1 46644 46644 5.2969 0.54088 1 3067200 + 43135 18462 28605 29328 50770 50770 0.0651426395766066 NQIPFIIQY 9 Unmodified _NQIPFIIQY_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3118286132812 2 568.310949 1134.60735 0.63257 0.0003595 -2.1752 -0.0012362 -1.5426 -0.00087667 568.3094680778622 87.912 0.31997 87.407 87.262 87.582 -0.50423 27 14 2 0 0 0 0.13231 2 48042 48042;48149 39.957 24.11 1 2531900 43136 9152 28606 29329 50771;50772 50771 0.045426025114238655 NQIPFIIQY 9 Unmodified _NQIPFIIQY_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3121948242188 2 568.310949 1134.60735 1.3762 0.00078213 -0.86583 -0.00049206 0.5104 0.00029007 568.3103709414211 96.405 0.63712 90.229 89.767 90.404 -6.1757 93 38 3 0 0 0 0.025842 3 63806 63682;63806;63935 74.423 74.423 1 50003000 43137 9152 28606 29329 50773;50774;50775 50774 0.045426025114238655 NQKNFLPFI 9 Unmodified _NQKNFLPFI_ 0 0 0 REV__ENST00000359856.10_1_1:183596160-183596256:-|nuORF REV__ENST00000359856.10_1_1:183596160-183596256:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8131103515625 2 560.811116 1119.60768 2.697 0.0015125 1.3895 0.00077926 4.0865 0.0022917 560.8119527999635 96.196 0.39588 96.189 95.966 96.361 -0.007019 39 13 4 0 0 0 0.16226 2 53392 53392;53493 26.884 8.7487 1 11199000 + 43138 25899 28607 29330 50776;50777 50776 0.05266022231262468 NQKPPSAEY 9 Unmodified _NQKPPSAEY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7677001953125 2 517.251089 1032.48762 0.32158 0.00016634 -0.89588 -0.00046339 -0.5743 -0.00029706 517.2507147941592 31.277 0.20336 31.277 31.194 31.398 0 18 9 3 0 0 0 0.20727 1 16257 16257 7.9102 0.62092 1 1757400 43139 4022;16177 28608 29331 50778 50778 -0.0273201083314234 NQLEPLSF 8 Unmodified _NQLEPLSF_ 0 0 0 REV__ENSG00000153179|ENST00000542104|RASSF3 REV__ENSG00000153179|ENST00000542104|RASSF3 MSMS AL20221201_MKP_PDAC_01 4 474.2463684082031 2 474.245275 946.475997 NaN NaN NaN NaN NaN NaN NaN 69.295 1 63.12 62.62 63.62 -6.1757 0 0 0 0.57076 1 45257 45257 36.044 0 1 + 43140 21157 28609 29332 50779 50779 0.0006179214352641793 NQLERNHNECL 11 Unmodified _NQLERNHNECL_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3175048828125 2 685.317499 1368.62045 NaN NaN NaN NaN NaN NaN NaN 92.137 1 92.137 91.637 92.637 0 0 0 0 0.94307 1 50948 50948 0.30703 0 1 + 43141 19369 28610 29333 50780 50780 -0.04911934438791832 NQLHHQIYT 9 Unmodified _NQLHHQIYT_ 0 0 0 REV__ENSG00000181004|ENST00000314218|BBS12 REV__ENSG00000181004|ENST00000314218|BBS12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.31640625 2 577.291079 1152.56761 0.38578 0.00022271 0.57933 0.00033444 0.96511 0.00055715 577.291289166295 59.037 0.21108 58.546 58.474 58.685 -0.49079 13 9 2 0 0 0 0.209 1 32167 32167 7.2892 0 1 698530 + 43142 23182 28611 29334 50781 50781 -0.0025752443928013236 NQLKQEKEL 9 Unmodified _NQLKQEKEL_ 0 0 0 REV__nc|ENSG00000257923|Q13948|CUX1 REV__nc|ENSG00000257923|Q13948|CUX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5449523925781 3 377.211906 1128.61389 -0.65049 -0.00024537 0.17013 6.4174E-05 -0.48036 -0.0001812 377.2119753527983 28.623 0.29767 28.623 28.483 28.781 0 24 14 2 0 0 0 0.31356 1 14744 14744 16.566 16.566 1 25973000 + 43143 28807 28612 29335 50782 50782 0.054724956721202034 NQLVFTHE 8 Unmodified _NQLVFTHE_ 0 0 0 ENSG00000186017|ENST00000452939|ZNF566;nc|ENSG00000186017|Q969W8-2|ZNF566 ENSG00000186017|ENST00000452939|ZNF566 ENSG00000186017|ENST00000452939|ZNF566 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2488098144531 2 494.248349 986.482145 0.68244 0.00033729 1.419 0.00070136 2.1015 0.0010386 494.24899557796925 68.242 0.63846 68.267 67.963 68.601 0.025146 59 31 3 0 0 0 0.80143 1 37462 37462 5.7604 0.52976 1 4384200 43144 9442 28613 29336 50783 50783 -0.011636896249569872 NQLYLELF 8 Unmodified _NQLYLELF_ 0 0 0 REV__ENSG00000148834|ENST00000369713|GSTO1 REV__ENSG00000148834|ENST00000369713|GSTO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2789916992188 2 520.276575 1038.5386 0.42557 0.00022141 -0.38347 -0.00019951 0.042098 2.1902E-05 520.2762814179501 84.081 0.55258 83.581 83.288 83.841 -0.49961 99 23 5 0 0 0 0.55032 1 45926 45926 30.225 5.5509 1 88885000 + 43145 20971 28614 29337 50784 50784 0.020869382116870838 NQLYLELF 8 Unmodified _NQLYLELF_ 0 0 0 REV__ENSG00000148834|ENST00000369713|GSTO1 REV__ENSG00000148834|ENST00000369713|GSTO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.277587890625 2 520.276575 1038.5386 0.93719 0.0004876 0.51747 0.00026923 1.4547 0.00075683 520.2768319309384 91.321 1.3163 85.145 84.406 85.723 -6.1757 166 54 4 0 0 0 0.46494 2 60537 60537;60661 38.151 5.2349 1 283730000 + 43146 20971 28614 29337 50785;50786 50785 0.020869382116870838 NQMGYRYVLL 10 Unmodified _NQMGYRYVLL_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5531005859375 3 419.553386 1255.63833 -0.087013 -3.6507E-05 0.41831 0.0001755 0.3313 0.000139 419.55361501593075 29.889 0.25853 29.919 29.811 30.07 0.030106 16 9 3 0 0 0 0.70951 1 15652 15652 0.77653 0.078866 1 1129000 + 43147 20368 28615 29338 50787 50787 0.02073432554016108 NQNEDERI 8 Unmodified _NQNEDERI_ 0 0 0 REV__ENSG00000137766|ENST00000260323|UNC13C REV__ENSG00000137766|ENST00000260323|UNC13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2332763671875 2 509.233427 1016.4523 0.34845 0.00017744 -0.99819 -0.00050831 -0.64974 -0.00033087 509.23317465484905 63.805 0.2704 63.805 63.659 63.93 0 19 10 3 0 0 0 0.80143 1 35574 35574 5.7604 0.52976 1 723690 + 43148 20264 28616 29339 50788 50788 -0.055266733609528274 NQNFEETSDFK 11 Unmodified _NQNFEETSDFK_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 679.7955322265625 2 679.796588 1357.57862 NaN NaN NaN NaN NaN NaN NaN 15.219 1 15.205 14.705 15.705 -0.014067 0 0 0 0.94165 1 7460 7460 1.3295 0.13619 1 + 43149 24045 28617 29340 50789 50789 -0.08586211646343145 NQNQDLDTF 9 Unmodified _NQNQDLDTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7421875 2 547.741085 1093.46762 0.42897 0.00023496 -0.39247 -0.00021497 0.036493 1.9989E-05 547.740747151342 83.231 0.45244 82.733 82.533 82.985 -0.49751 41 17 3 0 0 0 0.58865 1 45641 45641 2.0598 0 1 6012500 43150 8367 28618 29341 50790 50790 -0.07537806563777849 NQNSDQCMTML 11 Unmodified _NQNSDQCMTML_ 0 0 0 REV__nc|ENSG00000107968|P41279-2|MAP3K8 REV__nc|ENSG00000107968|P41279-2|MAP3K8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.7537841796875 2 642.754498 1283.49444 -1.027 -0.00066014 0.92761 0.00059622 -0.099438 -6.3914E-05 642.7552837295398 77.94 0.49055 77.458 77.101 77.591 -0.4826 83 35 3 0 0 0 0.6889 1 42678 42678 5.2969 0.96765 1 11327000 + 43151 18590 28619 29342 50791 50791 -0.13596525330740405 NQNSDQCMTML 11 Unmodified _NQNSDQCMTML_ 0 0 0 REV__nc|ENSG00000107968|P41279-2|MAP3K8 REV__nc|ENSG00000107968|P41279-2|MAP3K8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.8390502929688 3 428.838757 1283.49444 0.35883 0.00015388 1.6592 0.00071152 2.018 0.0008654 429.17413716201946 85.468 0.45462 79.292 79.075 79.53 -6.1757 35 27 2 0 0 0 0.68427 1 56281 56281 2.6312 0.19645 1 19000000 + 43152 18590 28619 29342 50792 50792 -0.13596525330740405 NQPFVAQD 8 Unmodified _NQPFVAQD_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2477111816406 2 459.719424 917.424296 0.50246 0.00023099 1.4646 0.00067331 1.9671 0.00090431 459.72005161548066 62.584 0.41174 62.096 61.872 62.284 -0.48764 31 19 2 0 0 0 8.7369 1 34108 34108 12.532 5.2423 1 2936100 + 43153 17073 28620 29343 50793 50793 -0.037719515503795265 NQPNTAMAPI 10 Unmodified _NQPNTAMAPI_ 0 0 0 REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 528.7606811523438 2 528.760766 1055.50698 NaN NaN NaN NaN NaN NaN NaN 96.471 1 90.295 89.795 90.795 -6.1757 0 0 0 0.51756 1 63930 63930 25.399 3.6527 1 + 43154 16752 28621 29344 50794 50794 -0.018553778138993948 NQQADASCEQL 11 Unmodified _NQQADASCEQL_ 0 0 0 REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 REV__nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.1743469238281 3 402.840032 1205.49827 0.54822 0.00022085 -2.0594 -0.00082963 -1.5112 -0.00060878 403.17408302401384 52.431 0.24828 51.997 51.891 52.139 -0.43367 26 12 4 0 0 0 0.71259 1 28338 28338 3.0723 0.077021 1 3735100 + 43155 22348 28622 29345 50795 50795 -0.09626396241014845 NQQPLWRIKNI 11 Unmodified _NQQPLWRIKNI_ 0 0 0 REV__nc|ENSG00000156475|Q00005-6|PPP2R2B REV__nc|ENSG00000156475|Q00005-6|PPP2R2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2067260742188 4 353.205756 1408.79392 -0.16943 -5.9842E-05 2.5448 0.00089883 2.3754 0.00083899 353.2065253749618 55.515 0.25844 55.447 55.238 55.497 -0.068737 23 12 3 0 0 0 0.74157 1 30162 30162 0.094841 0.011491 1 2753000 + 43156 21333 28623 29346 50796 50796 0.10587219399803871 NQRCDRGSRYM 11 Unmodified _NQRCDRGSRYM_ 0 0 0 SLC9C2|p.D935Y|1|0.09|ENSG00000162753|chr1:173517641-173517641|C/A|missense_variant SLC9C2|p.D935Y|1|0.09|ENSG00000162753|chr1:173517641-173517641|C/A|missense_variant SLC9C2|p.D935Y|1|0.09|ENSG00000162753|chr1:173517641-173517641|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.54345703125 3 462.543555 1384.60884 0.0050838 2.3515E-06 -0.2323 -0.00010745 -0.22722 -0.0001051 462.5434207860282 26.464 0.22815 26.464 26.323 26.551 0 23 10 3 0 0 0 0.70403 1 13603 13603 1.7824 0 1 2046600 43157 30167 28624 29347 50797 50797 -0.0680845473377758 NQRKESSSF 9 Unmodified _NQRKESSSF_ 0 0 0 nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7651977539062 2 541.764894 1081.51524 NaN NaN NaN NaN NaN NaN NaN 72.224 1 72.224 71.724 72.724 0 0 0 0 0.84564 1 40219 40219 2.0598 0 1 43158 268 28625 29348 50798 50798 -0.022261075728920332 NQRTINDMAY 10 Unmodified _NQRTINDMAY_ 0 0 0 REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 REV__nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2820434570312 2 613.285137 1224.55572 0.28508 0.00017483 -2.3262 -0.0014266 -2.0411 -0.0012518 613.2835147367105 63.682 0.3042 63.682 63.52 63.824 0 19 12 2 0 0 0 0.65282 1 35494 35494 8.1555 0.54658 1 783540 + 43159 18416 28626 29349 50799 50799 -0.047575092447686984 NQSRCEFF 8 Unmodified _NQSRCEFF_ 0 0 0 ENST00000524606.1_1_11:14526548-14526680:-|nuORF ENST00000524606.1_1_11:14526548-14526680:-|nuORF ENST00000524606.1_1_11:14526548-14526680:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7244262695312 2 515.724184 1029.43381 0.26029 0.00013424 -0.54566 -0.00028141 -0.28537 -0.00014717 515.7239835196517 84.301 0.23045 84.301 84.165 84.395 0 14 11 2 0 0 0 0.80763 1 46748 46748 2.0598 1.2661 1 344000 43160 14780 28627 29350 50800 50800 -0.07972506536520996 NQTGGYSDGL 10 Unmodified _NQTGGYSDGL_ 0 0 0 nc|ENSG00000167081|P40426-3|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000167081|ENST00000373489|PBX3 nc|ENSG00000167081|P40426-3|PBX3 nc|ENSG00000167081|P40426-3|PBX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.22216796875 2 506.222528 1010.4305 -0.8993 -0.00045524 -1.4652 -0.00074173 -2.3645 -0.001197 506.2221342508303 77.366 0.63503 76.884 76.58 77.215 -0.4826 123 29 7 0 0 0 0.66569 1 42445 42445 6.7232 0.36906 1 11515000 43161 7568 28628 29351 50801 50801 -0.07429478109509091 NQVEERIS 8 Unmodified _NQVEERIS_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|72|2|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|72|2|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|72|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.5657958984375 2 487.748713 973.482873 0.28672 0.00013985 -0.426 -0.00020778 -0.13928 -6.7934E-05 487.7487672690344 17.381 0.13531 17.386 17.295 17.43 0.0050564 11 8 2 0 0 0 0.80505 1 8723 8723 3.5965 0 1 709920 43162 15966 28629 29352 50802 50802 -0.0049289497588915765 NQVINNLL 8 Unmodified _NQVINNLL_ 0 0 0 REV__ENSG00000101216|ENST00000370077|GMEB2 REV__ENSG00000101216|ENST00000370077|GMEB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2664184570312 2 464.266542 926.51853 NaN NaN NaN NaN NaN NaN NaN 41.888 1 41.879 41.379 42.379 -0.0088196 0 0 0 0.95607 1 22410 22410 9.3474 0 1 + 43163 18147 28630 29353 50803 50803 0.052331872717559236 NQVSLSKGL 9 Unmodified _NQVSLSKGL_ 0 0 0 REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5 REV__nc|ENSG00000185760|Q9NR82-5|KCNQ5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.272705078125 2 473.271824 944.529095 NaN NaN NaN NaN NaN NaN NaN 22.041 1 22.064 21.564 22.564 0.022896 0 0 0 0.82396 1 11202 11202 4.756 0 1 + 43164 23523 28631 29354 50804 50804 0.05461169926195453 NQWHMSDL 8 Unmodified _NQWHMSDL_ 0 0 0 REV__nc|ENSG00000066933|B2RTY4-5|MYO9A REV__nc|ENSG00000066933|B2RTY4-5|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2265625 2 515.724184 1029.43381 -0.053391 -2.7535E-05 1.0476 0.00054029 0.99425 0.00051276 515.7250217789415 70.865 0.35509 70.865 70.686 71.041 0 117 40 4 0 0 0 0.80676 1 39437 39437 2.5775 0 1 6225100 + 43165 17411 28632 29355 50805 50805 -0.07972506536520996 NQWIPSHTEM 10 Unmodified _NQWIPSHTEM_ 0 0 0 REV__nc|ENSG00000188487|Q1MX18-3|INSC REV__nc|ENSG00000188487|Q1MX18-3|INSC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8101806640625 2 621.78223 1241.54991 0.75731 0.00047088 0.33194 0.00020639 1.0893 0.00067728 621.7824701820703 71.857 0.64249 71.896 71.469 72.111 0.039024 52 30 3 0 0 0 0.23325 1 39658 39658 10.074 3.3508 1 7389800 + 43166 27155 28633 29356 50806 50806 -0.061206077564520456 NRCHPNGSFH 10 Unmodified _NRCHPNGSFH_ 0 0 0 REV__ENST00000254765.3_1_6:105606606-105607625:-|nuORF REV__ENST00000254765.3_1_6:105606606-105607625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1748352050781 3 390.173679 1167.49921 -0.53919 -0.00021038 2.2792 0.0008893 1.74 0.00067892 390.1746367186333 26.225 0.21596 26.225 26.087 26.303 0 20 12 2 0 0 0 0.66569 1 13474 13474 6.1918 3.5606 1 2741900 + 43167 24906 28634 29357 50807 50807 -0.07784092290808076 NRCLETIIN 9 Unmodified _NRCLETIIN_ 0 0 0 REV__ENSG00000164327|ENST00000357387|RICTOR REV__ENSG00000164327|ENST00000357387|RICTOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.1893005371094 3 359.190336 1074.54918 NaN NaN NaN NaN NaN NaN NaN 18.228 1 18.234 17.734 18.734 0.0060463 0 0 0 0.84021 1 9230 9230 2.7352 0 1 + 43168 21907 28635 29358 50808 50808 0.014885975944935126 NRDGRDYFI 9 Unmodified _NRDGRDYFI_ 0 0 0 ENSG00000169933|ENST00000675598|FRMPD4;nc|ENSG00000169933|Q14CM0|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8537902832031 3 385.856233 1154.54687 1.1288 0.00043556 -0.97524 -0.0003763 0.15357 5.9255E-05 386.19126880541603 18.526 0.33364 15.904 15.709 16.043 -2.6215 66 33 3 0 0 0 0.51218 1 9758 9758 4.1895 0 1 1794000 43169 7929 28636 29359 50809 50809 -0.024221148189553787 NREKQRLIKSD 11 Unmodified _NREKQRLIKSD_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.931640625 3 462.931913 1385.77391 0.15768 7.2995E-05 0.95156 0.00044051 1.1092 0.0005135 462.9323678882315 15.626 0.14233 13.099 13.018 13.16 -2.5273 70 34 3 0 0 0 0.5551 1 8005 8005 11.065 8.6305 1 4289200 43170 4537 28637 29360 50810 50810 0.09645423669189768 NRELRRIES 9 Unmodified _NRELRRIES_ 0 0 0 REV__nc|ENSG00000187627|P0DJD0|RGPD1;REV__ENSG00000153165|ENST00000409886|RGPD3;REV__ENSG00000135968|ENST00000309863|GCC2 REV__ENSG00000153165|ENST00000409886|RGPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8272094726562 2 586.82836 1171.64217 1.0307 0.00060485 -2.2964 -0.0013476 -1.2657 -0.00074275 586.8265023113602 87.023 0.3555 80.847 80.661 81.017 -6.1757 43 19 3 0 0 0 0.18255 1 57455 57455 26.268 0 1 15525000 + 43171 23491;21156;20123 28638 29361 50811 50811 0.06321238372083826 NREPIFEKI 9 Unmodified _NREPIFEKI_ 0 0 0 REV__ENST00000301096.7_1_19:53117063-53117363:-|nuORF REV__ENST00000301096.7_1_19:53117063-53117363:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5488891601562 3 382.548629 1144.62406 0.99084 0.00037904 -0.46359 -0.00017735 0.52724 0.0002017 382.54845167975174 44.882 0.35457 40.03 39.834 40.188 -4.852 63 24 3 0 0 0 0.15471 1 27358 27358 26.021 8.5781 1 34315000 + 43172 25318 28639 29362 50812 50812 0.05753103397364612 NRFKIKPQF 9 Unmodified _NRFKIKPQF_ 0 0 0 nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8;nc|ENSG00000198000|Q76FK4-2|NOL8;ENST00000508336.1_1_4:166469096-166469723:-|nuORF nc|ENSG00000198000|Q76FK4-4|NOL8 nc|ENSG00000198000|Q76FK4-4|NOL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2346801757812 3 393.232864 1176.67676 3.4109 0.0013413 1.8155 0.00071392 5.2265 0.0020552 393.23353953019813 98.061 0.35522 98.043 97.873 98.228 -0.018188 32 12 3 0 0 0 0.61381 1 54483 54483 0.23584 0.076522 1 2079600 43173 10035 28640 29363 50813 50813 0.0954910625082448 NRFQQKLR 8 Unmodified _NRFQQKLR_ 0 0 0 ENSG00000180772|ENST00000371906|AGTR2 ENSG00000180772|ENST00000371906|AGTR2 ENSG00000180772|ENST00000371906|AGTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.819091796875 2 545.317432 1088.62031 0.1985 0.00010824 -1.5586 -0.00084991 -1.3601 -0.00074166 545.3167864843695 94.004 0.37306 93.584 93.37 93.743 -0.42044 35 18 3 0 0 0 0.80992 1 51295 51295 0.69038 0.088878 1 1401100 43174 8920 28641 29364 50814 50814 0.07954478414171717 NRGSDWFQFY 10 Unmodified _NRGSDWFQFY_ 0 0 0 ENSG00000130962|ENST00000378628|PRRG1 ENSG00000130962|ENST00000378628|PRRG1 ENSG00000130962|ENST00000378628|PRRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.5315551757812 3 440.531638 1318.57309 1.1233 0.00049484 -0.10701 -4.714E-05 1.0163 0.0004477 440.53161860330107 41.988 0.35204 37.304 37.125 37.477 -4.6846 56 21 3 0 0 0 0.60623 1 25227 25227 6.1918 2.3459 1 22488000 43175 4283 28642 29365 50815 50815 -0.073458456474782 NRGSDWFQFY 10 Unmodified _NRGSDWFQFY_ 0 0 0 ENSG00000130962|ENST00000378628|PRRG1 ENSG00000130962|ENST00000378628|PRRG1 ENSG00000130962|ENST00000378628|PRRG1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 440.531638 1318.57309 0.22827 0.00010056 0.19656 8.6592E-05 0.42483 0.00018715 440.5313442994491 37.451 0.17883 37.451 37.35 37.529 0 0.073745 0.00034326 NaN 6.1918 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3099400 43176 4283 28642 29365 -0.073458456474782 NRHMPLTGY 9 Unmodified _NRHMPLTGY_ 0 0 0 nc|ENSG00000186715|Q2TV78-2|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7704467773438 2 544.768926 1087.5233 NaN NaN NaN NaN NaN NaN NaN 80.386 1 80.386 79.886 80.886 0 0 0 0 0.84564 1 44636 44636 2.0598 0 1 43177 16463 28643 29366 50816 50816 -0.016962518571290275 NRIIRKVVKLF 11 Unmodified _NRIIRKVVKLF_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.4588012695312 2 693.458813 1384.90307 1.0797 0.00074871 -1.801 -0.0012489 -0.72132 -0.00050021 693.4572167899499 105 0.16438 98.819 98.736 98.9 -6.1757 35 13 4 0 0 0 0.74157 1 70261 70261 0.35063 0.043601 1 262650000 43178 4696 28644 29367 50817 50817 0.2260185008992721 NRILNQEIV 9 Unmodified _NRILNQEIV_ 0 0 0 REV__ENST00000457522.4_1_7:3180726-3197854:-|nuORF REV__ENST00000457522.4_1_7:3180726-3197854:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8800354003906 3 366.880379 1097.61931 1.832 0.00067211 -0.97732 -0.00035856 0.85464 0.00031355 366.88001477133366 21.452 0.41571 18.717 18.485 18.9 -2.7348 84 36 3 0 0 0 0.45045 1 11375 11375 6.6304 0.84694 1 13517000 + 43179 26626 28645 29368 50818 50818 0.07440219254613112 NRIQSIVF 8 Unmodified _NRIQSIVF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ASCC3|p.E486G|1|0.18|ENSG00000112249|chr6:100767284-100767284|T/C|missense_variant ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7829284667969 2 488.782359 975.550165 0.66034 0.00032276 -0.41721 -0.00020393 0.24313 0.00011884 488.78212356992236 49.22 0.46606 48.848 48.539 49.005 -0.37172 52 22 4 0 0 0 0.31612 1 26417 26417 53.576 0 1 4987100 43180 2874 28646 29369 50819 50819 0.06141180025713311 NRISGTCRNHF 11 Unmodified _NRISGTCRNHF_ 0 0 0 nc|ENSG00000216671|P0C7X3|CCNYL3 nc|ENSG00000216671|P0C7X3|CCNYL3 nc|ENSG00000216671|P0C7X3|CCNYL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5484008789062 3 435.547405 1303.62039 1.0897 0.00047463 1.1553 0.00050318 2.245 0.00097781 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.6889 2 10197 10197;10739 2.4348 0.65236 1 1375000000 43181 16547 28647 29370 50820;50821 50820 -0.019278896481182528 NRIWFWYR 8 Unmodified _NRIWFWYR_ 0 0 0 REV__ENST00000498642.5_1_1:19923574-19948639:+|nuORF REV__ENST00000498642.5_1_1:19923574-19948639:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8940124511719 3 414.217325 1239.63015 -0.073133 -3.0293E-05 -3.5362 -0.0014648 -3.6093 -0.0014951 414.5495125218133 18.19 0.1603 18.196 18.095 18.255 0.0060463 19 16 2 0 0 0 8.7369 1 9224 9224 9.3831 0.13935 1 3893800 + 43182 27997 28648 29371 50822 50822 0.01991666419530702 NRKCMQVQRQ 10 Unmodified _NRKCMQVQRQ_ 0 0 0 REV__ENSG00000162552|ENST00000290167|WNT4 REV__ENSG00000162552|ENST00000290167|WNT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880920410156 3 430.888774 1289.64449 NaN NaN NaN NaN NaN NaN NaN 19.667 1 19.667 19.167 20.167 0 0 0 0 1.0024 1 9851 9851 0.13989 0 1 + 43183 21657 28649 29372 50823 50823 0.01125627513897598 NRKDAEAW 8 Unmodified _NRKDAEAW_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7;ENSG00000186393|ENST00000335552|KRT26;CON__Q7Z3Y9 ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.244140625 2 495.243598 988.472643 -0.44154 -0.00021867 0.14359 7.1111E-05 -0.29795 -0.00014756 495.24381513584535 17.825 0.22911 17.839 17.721 17.951 0.013866 63 38 2 0 0 0 0.73714 1 8907 8907 13.906 1.6654 1 769000 + 43184 169;167 28650 29373 50824 50824 -0.02205457910486075 NRKVGSLWDSE 11 Unmodified _NRKVGSLWDSE_ 0 0 0 ENST00000430546.1_1_2:168671597-168726282:-|nuORF ENST00000430546.1_1_2:168671597-168726282:-|nuORF ENST00000430546.1_1_2:168671597-168726282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8883666992188 3 430.886081 1289.63641 NaN NaN NaN NaN NaN NaN NaN 79.171 1 72.995 72.495 73.495 -6.1757 0 0 0 0.93224 1 51866 51866 2.6312 0 1 43185 13246 28651 29374 50825 50825 0.0031809506976969715 NRLAKKIIPL 10 Unmodified _NRLAKKIIPL_ 0 0 0 REV__ENST00000357103.4_1_12:1863654-1887044:+|nuORF REV__ENST00000357103.4_1_12:1863654-1887044:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8933715820312 2 583.392608 1164.77066 -0.1772 -0.00010338 0.67233 0.00039223 0.49513 0.00028886 583.393411049077 105.08 0.03923 105.03 105.01 105.05 -0.048737 13 7 3 0 0 0 0.72196 1 58318 58318 0.45834 0 1 3652900 + 43186 25841 28652 29375 50826 50826 0.19486825353146742 NRLCKRIR 8 Unmodified _NRLCKRIR_ 0 0 0 REV__ENSG00000262655|ENST00000576479|SPON1 REV__ENSG00000262655|ENST00000576479|SPON1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.55029296875 3 353.55031 1057.6291 NaN NaN NaN NaN NaN NaN NaN 23.151 1 23.151 22.651 23.651 0 0 0 0 0.97444 1 11794 11794 0 0 1 + 43187 24594 28653 29376 50827 50827 0.1025912877898918 NRLHTKCHRIL 11 Unmodified _NRLHTKCHRIL_ 0 0 0 REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B REV__nc|ENSG00000187801|Q9UJL9-2|ZFP69B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2669982910156 3 464.266462 1389.77756 0.013492 6.2637E-06 -0.86364 -0.00040096 -0.85014 -0.00039469 464.26588351997447 41.363 0.52165 41.361 41.096 41.618 -0.0017929 60 24 4 0 0 0 0.69838 1 22029 22029 4.4062 1.7749 1 12365000 + 43188 23665 28654 29377 50828 50828 0.09825814962027835 NRLLLHVLK 9 Unmodified _NRLLLHVLK_ 0 0 0 ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000476936.5_1_1:113162466-113209756:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3645629882812 2 553.36385 1104.71315 1.5925 0.00088125 0.38231 0.00021155 1.9748 0.0010928 553.3638464891354 106.7 0.40643 100.53 100.21 100.62 -6.1757 101 74 2 0 0 0 0.61381 1 71306 71306 0.52476 0.52476 1 2930100 43189 13991 28655 29378 50829 50829 0.16497983147542072 NRLNSQKVFK 10 Unmodified _NRLNSQKVFK_ 0 0 0 ENST00000339485.3_1_19:5909160-5909301:+|nuORF ENST00000339485.3_1_19:5909160-5909301:+|nuORF ENST00000339485.3_1_19:5909160-5909301:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3550415039062 2 617.356754 1232.69895 0.66556 0.00041089 -2.6668 -0.0016464 -2.0013 -0.0012355 617.3552445258824 78.791 0.37238 78.846 78.707 79.079 0.05497 26 14 3 0 0 0 0.30673 1 43502 43502 38.176 12.776 1 9619400 43190 11951 28656 29379 50830 50830 0.09191285928591242 NRLQTWYL 8 Unmodified _NRLQTWYL_ 0 0 0 REV__ENST00000453372.6_1_19:9768717-9768792:-|nuORF REV__ENST00000453372.6_1_19:9768717-9768792:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.525634765625 3 365.197819 1092.57163 -0.37825 -0.00013814 0.55821 0.00020386 0.17996 6.5721E-05 365.1979795338067 35.269 0.21366 35.046 34.938 35.151 -0.2224 15 9 3 0 0 0 8.7369 1 18520 18520 7.2892 1.0834 1 2314300 + 43191 27230 28657 29380 50831 50831 0.02904565054404884 NRLSELDTY 9 Unmodified _NRLSELDTY_ 0 0 0 REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61 REV__nc|ENSG00000104983|Q9Y6R9-2|CCDC61 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7757568359375 2 555.774928 1109.5353 1.1458 0.0006368 -0.58112 -0.00032297 0.56467 0.00031383 555.7750356748963 50.633 0.84397 45.088 44.755 45.599 -5.5446 127 52 4 0 0 0 0.34999 1 31792 31792 14.838 0 1 486270000 + 43192 18395 28658 29381 50832 50832 -0.015083566329622045 NRMFTLLYAI 10 Unmodified _NRMFTLLYAI_ 0 0 0 ENSG00000234438|ENST00000432196|KBTBD13 ENSG00000234438|ENST00000432196|KBTBD13 ENSG00000234438|ENST00000432196|KBTBD13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3416748046875 2 621.339184 1240.66381 NaN NaN NaN NaN NaN NaN NaN 89.636 1 89.636 89.136 90.136 0 0 0 0 0.97302 1 49594 49594 3.5965 0.31518 1 43193 10633 28659 29382 50833 50833 0.053109070764776334 NRMKLDFTL 9 Unmodified _NRMKLDFTL_ 0 0 0 ENST00000304337.2_1_4:153690730-153690883:-|nuORF ENST00000304337.2_1_4:153690730-153690883:-|nuORF ENST00000304337.2_1_4:153690730-153690883:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8488159179688 3 379.874348 1136.60121 0.41358 0.00015711 2.6656 0.0010126 3.0792 0.0011697 380.2087907570302 25.287 0.27726 22.404 22.309 22.586 -2.8831 26 15 2 0 0 0 0.21367 1 13795 13795 2.7352 0 1 2369200 43194 11603 28660 29383 50834 50834 0.038377610082534375 NRMKNSREQ 9 Unmodified _NRMKNSREQ_ 0 0 0 REV__ENSG00000126653|ENST00000247026|NSRP1 REV__ENSG00000126653|ENST00000247026|NSRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.792236328125 2 581.790921 1161.56729 NaN NaN NaN NaN NaN NaN NaN 93.517 1 93.517 93.017 94.017 0 0 0 0 0.85798 1 51701 51701 0.52476 0 1 + 43195 19554 28661 29384 50835 50835 -0.0070326743079931475 NRMTPHNLGIV 11 Unmodified _NRMTPHNLGIV_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.3334350585938 2 626.334964 1250.65538 0.23268 0.00014573 -0.5687 -0.0003562 -0.33602 -0.00021046 626.3344528639188 77.685 0.28848 77.685 77.544 77.833 0 30 16 3 0 0 0 0.65096 1 43155 43155 15.248 8.5253 1 1242700 43196 3696 28662 29385 50836 50836 0.04007353159795457 NRMTPHNLGIV 11 Unmodified _NRMTPHNLGIV_ 0 0 0 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 nc|ENSG00000123329|Q9BRR9-4|ARHGAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.3356323242188 2 626.334964 1250.65538 0.23402 0.00014658 0.27707 0.00017354 0.51109 0.00032012 626.3351431000475 84.549 0.36881 84.549 84.395 84.764 0 42 17 3 0 0 0 0.58245 1 46913 46913 15.248 4.449 1 1987000 43197 3696 28662 29385 50837 50837 0.04007353159795457 NRPGTVSSL 9 Unmodified _NRPGTVSSL_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7522277832031 2 465.753798 929.493044 0.0786 3.6608E-05 -2.0027 -0.00093276 -1.9241 -0.00089615 465.75285666450816 24.584 0.24875 24.584 24.49 24.739 0 19 14 2 0 0 0 0.07087 1 12572 12572 39.95 11.463 1 826370 43198 233 28663 29386 50838 50838 0.025477127493331864 NRPGTVSSL 9 Unmodified _NRPGTVSSL_ 0 0 0 nc|ENSG00000124795|P35659-2|DEK;DEK|p.K330Nfs*13|1|0.18|ENSG00000124795|chr6:18236506-18236509|TTTC/-|frameshift_variant;ENSG00000124795|ENST00000652689|DEK nc|ENSG00000124795|P35659-2|DEK nc|ENSG00000124795|P35659-2|DEK MSMS AL20221201_MKP_PDAC_01 4 465.7540588378906 2 465.753798 929.493044 NaN NaN NaN NaN NaN NaN NaN 27.65 1 24.613 24.113 25.113 -3.0365 0 0 0 0.059498 1 15342 15342 53.833 7.8118 1 43199 233 28663 29386 50839 50839 0.025477127493331864 NRQHYQMIQ 9 Unmodified _NRQHYQMIQ_ 0 0 0 nc|ENSG00000149091|Q13574-6|DGKZ;ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;ENST00000378718.2_1_13:44545263-44545332:+|nuORF;ENST00000528173.5_1_11:46400622-46401494:+|nuORF;ENST00000534802.1_1_11:46400234-46401494:+|nuORF nc|ENSG00000149091|Q13574-6|DGKZ nc|ENSG00000149091|Q13574-6|DGKZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5326843261719 3 406.532985 1216.57712 -0.072275 -2.9382E-05 -1.1585 -0.00047098 -1.2308 -0.00050036 406.5325170343567 22.29 0.13434 22.307 22.235 22.37 0.01749 9 5 2 0 0 0 0.59218 1 11453 11453 0.96228 0 1 996700 43200 5982 28664 29387 50840 50840 -0.022500794254256107 NRQVILLQV 9 Unmodified _NRQVILLQV_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1;INSM1|p.E495K|1|0.15|ENSG00000173404|chr20:20369750-20369750|G/A|missense_variant ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5612487792969 3 361.560869 1081.66078 -0.096452 -3.4873E-05 0.63986 0.00023135 0.54341 0.00019648 361.5610884301947 32.801 0.84599 32.831 32.698 33.544 0.029743 56 37 2 0 0 0 0.49272 1 17356 17356 4.897 0.36815 1 1925400 43201 8320 28665 29388 50841 50841 0.12321400013956918 NRQVILLQV 9 Unmodified _NRQVILLQV_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1;INSM1|p.E495K|1|0.15|ENSG00000173404|chr20:20369750-20369750|G/A|missense_variant ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5611877441406 3 361.560869 1081.66078 0.041113 1.4865E-05 0.68943 0.00024927 0.73055 0.00026414 361.56113996212275 33.781 0.6221 33.81 33.543 34.165 0.028934 39 27 2 0 0 0 0.55144 1 17765 17765 8.1555 4.2792 1 1584400 43202 8320 28665 29388 50842 50842 0.12321400013956918 NRQVILLQV 9 Unmodified _NRQVILLQV_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1;INSM1|p.E495K|1|0.15|ENSG00000173404|chr20:20369750-20369750|G/A|missense_variant ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5602416992188 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 31.099 1 31.129 30.629 31.629 0.030106 0 0 0 0.6032 1 16280 16280 17.113 4.8722 1 43203 8320 28665 29388 50843 50843 0.12321400013956918 NRQVILLQV 9 Unmodified _NRQVILLQV_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1;INSM1|p.E495K|1|0.15|ENSG00000173404|chr20:20369750-20369750|G/A|missense_variant ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5606079101562 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 31.719 1 31.749 31.249 32.249 0.030106 0 0 0 0.7453 1 16631 16631 8.1555 4.5685 1 43204 8320 28665 29388 50844 50844 0.12321400013956918 NRQVILLQV 9 Unmodified _NRQVILLQV_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1;INSM1|p.E495K|1|0.15|ENSG00000173404|chr20:20369750-20369750|G/A|missense_variant ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.7989807128906 3 361.560869 1081.66078 -0.34196 -0.00012364 1.7293 0.00062526 1.3874 0.00050162 361.56165119166485 36.686 0.28534 36.707 36.619 36.904 0.021545 18 12 2 0 0 0 0.21822 1 19516 19516 2.4985 2.0401 1 758110 43205 8320 28665 29388 50845 50845 0.12321400013956918 NRREVAPTY 9 Unmodified _NRREVAPTY_ 0 0 0 ENST00000539906.5_2_12:69082787-69085752:+|nuORF ENST00000539906.5_2_12:69082787-69085752:+|nuORF ENST00000539906.5_2_12:69082787-69085752:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2888793945312 2 553.291079 1104.56761 0.57522 0.00031827 -1.012 -0.00055995 -0.43682 -0.00024169 553.2899604652926 77.459 0.75307 71.284 70.899 71.652 -6.1757 143 43 4 0 0 0 0.25681 2 50527 50527;50765 19.257 19.257 1 155270000 43206 15024 28666 29389 50846;50847 50846 0.019504755607158586 NRRKAKRTY 9 Unmodified _NRRKAKRTY_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.2135009765625 3 398.2389 1191.69487 0.55894 0.00022259 1.7314 0.00068951 2.2903 0.0009121 398.2389124901965 27.989 0.3642 24.841 24.639 25.003 -3.1482 53 19 4 0 0 0 0.21641 1 15535 15535 4.1895 0.86986 1 49614000 43207 8170 28667 29390 50848 50848 0.10669241225559745 NRRPRRRERWL 11 Unmodified _NRRPRRRERWL_ 0 0 0 ENST00000238823.12_1_2:33810368-33810437:-|nuORF ENST00000238823.12_1_2:33810368-33810437:-|nuORF ENST00000238823.12_1_2:33810368-33810437:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7620239257812 3 532.313574 1593.91889 4.3298 0.0023048 0.79081 0.00042096 5.1206 0.0027258 532.648299466907 99.05 0.076797 99.022 98.975 99.051 -0.028282 8 2 4 0 0 0 0.306 1 54998 54998 0.45452 0.35968 1 3991800 43208 11099 28668 29391 50849 50849 0.1456894937953166 NRRRRQTWRRF 11 Unmodified _NRRRRQTWRRF_ 0 0 0 REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 816.4644775390625 2 816.464347 1630.91414 NaN NaN NaN NaN NaN NaN NaN 98.072 1 97.83 97.33 98.33 -0.24277 0 0 0 0.9435 1 53565 53565 0 0 1 + 43209 24821 28669 29392 50850 50850 0.12392065236736016 NRRRRQTWRRF 11 Unmodified _NRRRRQTWRRF_ 0 0 0 REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF REV__ENST00000233468.4_1_2:24290678-24291201:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 816.4667358398438 2 816.464347 1630.91414 NaN NaN NaN NaN NaN NaN NaN 101.03 1 94.853 94.353 95.353 -6.1757 0 0 0 0.94301 1 67704 67704 0.35063 0.35063 1 + 43210 24821 28669 29392 50851 50851 0.12392065236736016 NRSNTVVIM 9 Unmodified _NRSNTVVIM_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1;nc|ENSG00000122692|Q2TAY7-2|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF ENSG00000122692|ENST00000397149|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF ENSG00000122692|ENST00000397149|SMU1 MSMS AL20221201_MKP_PDAC_01 4 517.2765502929688 2 517.276583 1032.53861 NaN NaN NaN NaN NaN NaN NaN 42.509 1 37.825 37.325 38.325 -4.6846 0 0 0 0.46232 1 25691 25691 17.113 0.026346 1 43211 3655;12578 28670 29393 50852 50852 0.02364614940051979 NRSVHGAV 8 Unmodified _NRSVHGAV_ 0 0 0 REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2287292480469 2 420.227751 838.440949 0.13805 5.8012E-05 1.0246 0.00043058 1.1627 0.00048859 420.2281126134602 78.839 0.401 78.353 78.084 78.485 -0.48596 39 15 3 0 0 0 0.80624 1 43129 43129 2.8892 2.0956 1 2742400 + 43212 24776 28671 29394 50853 50853 0.015265941262327942 NRSVHGAV 8 Unmodified _NRSVHGAV_ 0 0 0 REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 420.227751 838.440949 0.026799 1.1261E-05 1.6884 0.00070952 1.7152 0.00072078 420.22821718160395 78.075 0.4136 78.075 77.878 78.291 0 -0.13913 0.0003036 NaN 2.8892 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3416500 + 43213 24776 28671 29394 0.015265941262327942 NRSVHGAV 8 Unmodified _NRSVHGAV_ 0 0 0 REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 420.227751 838.440949 0.13805 5.8012E-05 1.0246 0.00043058 1.1627 0.00048859 420.2281126134602 78.839 0.401 78.353 78.084 78.485 -0.48596 0.13913 -0.00025428 NaN 2.8892 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2742400 + 43214 24776 28671 29394 0.015265941262327942 NRTVFVSIDI 10 Unmodified _NRTVFVSIDI_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5504455566406 3 388.552151 1162.63462 1.7057 0.00066274 -1.8818 -0.00073118 -0.17613 -6.8436E-05 388.55130155867414 35.91 0.34328 31.717 31.493 31.837 -4.1928 56 21 3 0 0 0 0.51153 1 20875 20875 15.739 0.49014 1 17580000 43215 9675 28672 29395 50854 50854 0.059810860518155096 NRVILAPPPE 10 Unmodified _NRVILAPPPE_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.2168579101562 3 369.216991 1104.62914 -0.10244 -3.7822E-05 0.30433 0.00011236 0.20189 7.454E-05 369.2170180320001 37.591 0.19403 37.32 37.181 37.375 -0.27133 17 7 3 0 0 0 0.44373 1 19755 19755 12.175 3.1985 1 3165900 + 43216 17221 28673 29396 50855 50855 0.08101407259982807 NRVILAPPPE 10 Unmodified _NRVILAPPPE_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.216991 1104.62914 -0.10244 -3.7822E-05 0.30433 0.00011236 0.20189 7.454E-05 369.2170180320001 37.591 0.19403 37.32 37.181 37.375 -0.27133 -0.017556 7.0721E-05 NaN 12.175 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3165900 + 43217 17221 28673 29396 0.08101407259982807 NRVILAPPPE 10 Unmodified _NRVILAPPPE_ 0 0 0 REV__ENSG00000047188|ENST00000161863|YTHDC2 REV__ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 369.216991 1104.62914 1.377 0.00050839 0.00064397 2.3777E-07 1.3776 0.00050863 369.21762547128804 42.04 0.27951 37.355 37.252 37.531 -4.6846 0.017556 -0.00026565 NaN 12.175 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 12031000 + 43218 17221 28673 29396 0.08101407259982807 NRVPWRRLFR 10 Unmodified _NRVPWRRLFR_ 0 0 0 ENST00000488738.5_1_20:61594563-61595083:+|nuORF;nc|ENSG00000101194|Q9BYT1-2|SLC17A9;ENSG00000101194|ENST00000370351|SLC17A9 ENST00000488738.5_1_20:61594563-61595083:+|nuORF ENST00000488738.5_1_20:61594563-61595083:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2760925292969 3 467.277578 1398.8109 NaN NaN NaN NaN NaN NaN NaN 22.076 1 22.089 21.589 22.589 0.013796 0 0 0 0.9997 1 11329 11329 0.69767 0.24315 1 43219 1930 28674 29397 50856 50856 0.12745184796244757 NRYPDIQASY 10 Unmodified _NRYPDIQASY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7942504882812 2 613.793652 1225.57275 0.0036066 2.2137E-06 0.97534 0.00059866 0.97895 0.00060087 613.7941701277571 60.588 0.23925 60.099 60.03 60.269 -0.48932 15 11 2 0 0 0 0.39689 1 32993 32993 24.991 8.8419 1 2433700 43220 1983 28675 29398 50857 50857 -0.03101265367331507 NRYYYYHRQYR 11 Unmodified _NRYYYYHRQYR_ 0 0 0 ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10 ENST00000565031.1_1_16:2009625-2011290:+|nuORF ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.40234375 2 841.402755 1680.79096 NaN NaN NaN NaN NaN NaN NaN 65.474 1 65.474 64.974 65.974 0 0 0 0 0.9435 1 36519 36519 0 0 1 43221 5292 28676 29399 50858 50858 -0.022206557250228798 NSAANNVYQY 10 Unmodified _NSAANNVYQY_ 0 0 0 ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 MSMS AL20221201_MKP_PDAC_01 4 572.2574462890625 2 572.256902 1142.49925 NaN NaN NaN NaN NaN NaN NaN 15.075 1 12.547 12.047 13.047 -2.5273 0 0 0 0.85122 1 7705 7705 10.074 0 1 43222 2456 28677 29400 50859 50859 -0.06629813809809093 NSAASFFA 8 Unmodified _NSAASFFA_ 0 0 0 ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF ENSG00000144063|ENST00000272462|MALL ENSG00000144063|ENST00000272462|MALL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.3731689453125 1 814.372995 813.365718 -0.36337 -0.00029592 0.53218 0.00043339 0.16881 0.00013748 814.3734655064951 55.189 0.22881 55.189 55.054 55.283 0 14 9 2 0 0 0 0.79783 1 30625 30625 7.9102 0 1 1247900 43223 5584 28678 29401 50860 50860 -0.04843008124851167 NSALYTSGP 9 Unmodified _NSALYTSGP_ 0 0 0 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 REV__nc|ENSG00000105939|Q7Z2W4-3|ZC3HAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4317626953125 1 909.431238 908.423961 -0.024244 -2.2048E-05 -0.048825 -4.4403E-05 -0.073069 -6.6451E-05 909.4310885731373 40.099 0.52906 35.57 35.26 35.79 -4.5294 114 44 3 0 0 0 0.047788 1 23976 23976 45.7 1.8413 1 198360000 + 43224 18474 28679 29402 50861 50861 -0.033913712702315024 NSCKLSSSFII 11 Unmodified _NSCKLSSSFII_ 0 0 0 ENSG00000126218|ENST00000375559|F10 ENSG00000126218|ENST00000375559|F10 ENSG00000126218|ENST00000375559|F10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8117065429688 2 599.810456 1197.60636 0.36761 0.0002205 0.17275 0.00010362 0.54036 0.00032412 599.8104567556884 99.868 0.31297 99.71 99.613 99.926 -0.15751 27 10 3 0 0 0 0.37677 1 54522 54522 22.736 0 1 7590800 43225 3933 28680 29403 50862 50862 0.015460200802181134 NSDGTLVLF 9 Unmodified _NSDGTLVLF_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4957275390625 1 965.493838 964.486562 0.16472 0.00015903 0.4787 0.00046219 0.64342 0.00062122 965.4939563528844 79.201 0.26867 79.201 79.057 79.326 0 18 11 2 0 0 0 0.044011 1 43973 43973 47.749 7.7914 1 704640 43226 2782 28681 29404 50863 50863 0.0028977479796594707 NSEDHHAADC 10 Unmodified _NSEDHHAADC_ 0 0 0 REV__nc|ENSG00000161791|Q8IVF7|FMNL3 REV__nc|ENSG00000161791|Q8IVF7|FMNL3 MSMS AL20221201_MKP_PDAC_01 4 366.8023071289062 3 366.801688 1097.38324 NaN NaN NaN NaN NaN NaN NaN 0.075474 1 -2.4065 -2.9065 -1.9065 -2.482 0 0 0 1.0061 1 41 41 0 0 1 + 43227 29737 28682 29405 50864 50864 -0.16156080652172022 NSEENHYGLE 10 Unmodified _NSEENHYGLE_ 0 0 0 ENST00000393077.2_1_10:114576537-114576684:+|nuORF ENST00000393077.2_1_10:114576537-114576684:+|nuORF ENST00000393077.2_1_10:114576537-114576684:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2506713867188 2 596.249274 1190.484 -0.35824 -0.0002136 -3.0669 -0.0018286 -3.4252 -0.0020422 596.247430924181 23.623 0.56825 23.623 23.469 24.037 0 79 28 4 0 0 0 0.5933 1 12103 12103 11.495 1.4208 1 6522500 43228 12690 28683 29406 50865 50865 -0.10362725397658323 NSEIKIVAL 9 Unmodified _NSEIKIVAL_ 0 0 0 REV__ENSG00000169495|ENST00000302495|HTRA4 REV__ENSG00000169495|ENST00000302495|HTRA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7982177734375 2 493.797675 985.580796 0.38853 0.00019185 -0.0229 -1.1308E-05 0.36563 0.00018055 493.79766695528826 57.784 0.20104 57.784 57.716 57.917 0 14 8 2 0 0 0 0.10247 1 32159 32159 32.786 1.5173 1 1476300 + 43229 22403 28684 29407 50866 50866 0.08742913620085346 NSFCNHIHK 9 Unmodified _NSFCNHIHK_ 0 0 0 REV__nc|ENSG00000119787|Q8NHH9-5|ATL2 REV__nc|ENSG00000119787|Q8NHH9-5|ATL2 MSMS AL20221201_MKP_PDAC_01 4 367.1753845214844 3 367.174909 1098.5029 NaN NaN NaN NaN NaN NaN NaN 94.576 1 88.4 87.9 88.9 -6.1757 0 0 0 0.84737 1 62640 62640 0.96228 0 1 + 43230 19213 28685 29408 50867 50867 -0.04241422516952298 NSFGEDKYHL 10 Unmodified _NSFGEDKYHL_ 0 0 0 REV__ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant REV__ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.2756958007812 2 605.280377 1208.5462 0.26203 0.0001586 -1.7096 -0.0010348 -1.4475 -0.00087617 605.2804217540537 39.328 0.8576 39.339 39.001 39.859 0.011456 127 40 5 0 0 0 0.6966 1 21185 21185 3.2813 0.78282 1 35942000 + 43231 19447 28686 29409 50868 50868 -0.04972954258664686 NSFLTYVYPWI 11 Unmodified _NSFLTYVYPWI_ 0 0 0 REV__ENSG00000162433|ENST00000327299|AK4 REV__ENSG00000162433|ENST00000327299|AK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.5745544433594 3 468.239573 1401.69689 0.63852 0.00029898 0.96372 0.00045125 1.6022 0.00075023 468.2403605965084 18.335 0.27465 15.713 15.604 15.878 -2.6215 52 22 3 0 0 0 0.69509 1 9738 9738 4.7159 1.6437 1 3715200 + 43232 21647 28687 29410 50869 50869 0.012108124001315446 NSFPQKISY 9 Unmodified _NSFPQKISY_ 0 0 0 nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2774658203125 2 542.277106 1082.53966 -0.12354 -6.6992E-05 2.3455 0.0012719 2.2219 0.0012049 542.278539015464 41.339 0.58942 41.036 40.582 41.171 -0.30304 40 28 2 0 0 0 0.21643 1 21882 21882 21.537 5.7688 1 3506200 43233 569 28688 29411 50870 50870 0.001691525806336358 NSFPQKISY 9 Unmodified _NSFPQKISY_ 0 0 0 nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 MSMS AL20221201_MKP_PDAC_01 4 542.2792358398438 2 542.277106 1082.53966 NaN NaN NaN NaN NaN NaN NaN 46.161 1 41.206 40.706 41.706 -4.9549 0 0 0 0.016321 1 28464 28464 83.429 31.799 1 43234 569 28688 29411 50871 50871 0.001691525806336358 NSFQEFVQI 9 Unmodified _NSFQEFVQI_ 0 0 0 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 nc|ENSG00000119326|Q9UBT7-3|CTNNAL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.28759765625 2 556.274564 1110.53457 NaN NaN NaN NaN NaN NaN NaN 73.036 1 73.036 72.536 73.536 0 0 0 0 0.6306 1 40661 40661 11.64 0.81637 1 43235 3424 28689 29412 50872 50872 -0.01627151281991246 NSHEMAIVF 9 Oxidation (M) _NSHEM(Oxidation (M))AIVF_ NSHEM(1)AIVF NSHEM(52)AIVF 0 0 1 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2474365234375 2 532.247492 1062.48043 0.18751 9.98E-05 -0.056759 -3.021E-05 0.13075 6.959E-05 532.2472232444509 45.436 0.33607 45.436 45.288 45.625 0 32 18 3 0 0 0 0.036857 2 24833 24722;24833 51.63 18.373 1 18675000 43236 1854 28690 29413 50873;50874 50874 306 -0.048310667052192 NSHLRSMPA 9 Unmodified _NSHLRSMPA_ 0 0 0 ENSG00000104549|ENST00000265896|SQLE ENSG00000104549|ENST00000265896|SQLE ENSG00000104549|ENST00000265896|SQLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7530517578125 2 506.753276 1011.492 -0.079299 -4.0185E-05 0.93547 0.00047405 0.85617 0.00043387 506.75359417711417 53.834 0.39959 53.768 53.622 54.021 -0.066936 74 23 5 0 0 0 0.25681 1 29163 29163 19.257 4.6753 1 49826000 43237 2216 28691 29414 50875 50875 -0.013288248912317613 NSHQNVLSNYF 11 Unmodified _NSHQNVLSNYF_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2063598632812 3 441.542314 1321.60511 -0.13151 -5.8068E-05 -0.30034 -0.00013261 -0.43186 -0.00019068 441.5422727256185 22.445 0.45075 22.445 22.283 22.734 0 31 21 2 0 0 0 0.30403 1 11467 11467 4.7159 0.83959 1 778650 43238 412 28692 29415 50876 50876 -0.042824779643297006 NSIKTYLLLMS 11 Unmodified _NSIKTYLLLMS_ 0 0 0 REV__ENST00000535077.1_1_11:18537681-18541125:-|nuORF REV__ENST00000535077.1_1_11:18537681-18541125:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2406616210938 3 428.240696 1281.70026 0.27155 0.00011629 -1.1025 -0.00047213 -0.83094 -0.00035584 428.24027080645726 51.86 0.26849 51.801 51.67 51.939 -0.058918 26 12 3 0 0 0 0.70403 1 28079 28079 1.7824 0 1 2342600 + 43239 28515 28693 29416 50877 50877 0.07067739182502919 NSKKKKKKKKK 11 Unmodified _NSKKKKKKKKK_ 0 0 0 ENST00000373344.9_1_X:76762287-76762440:-|nuORF ENST00000373344.9_1_X:76762287-76762440:-|nuORF ENST00000373344.9_1_X:76762287-76762440:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 686.9755859375 2 686.97737 1371.94019 NaN NaN NaN NaN NaN NaN NaN 95.899 1 95.531 95.031 96.031 -0.36814 0 0 0 0.9435 1 52378 52378 0 0 1 43240 12410 28694 29417 50878 50878 0.26909521635661804 NSKPQLYMFI 10 Unmodified _NSKPQLYMFI_ 0 0 0 REV__ENSG00000279961|ENST00000623286|OR8U3 REV__ENSG00000279961|ENST00000623286|OR8U3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2178649902344 3 414.218003 1239.63218 -0.67427 -0.00027929 0.5011 0.00020757 -0.17317 -7.1728E-05 414.218223255925 16.074 0.15323 16.074 15.974 16.127 0 96 30 4 0 0 0 0.69064 1 7750 7750 1.9064 0 1 6619400 + 43241 24678 28695 29418 50879 50879 0.02194914322490149 NSKREEKLFN 10 Unmodified _NSKREEKLFN_ 0 0 0 ENSG00000120217|ENST00000381577|CD274;ENST00000492923.1_1_9:5462961-5465689:+|nuORF;nc|ENSG00000120217|Q9NZQ7-2|CD274;nc|ENSG00000120217|Q9NZQ7-4|CD274;ENST00000474218.1_1_9:5462862-5463174:+|nuORF ENSG00000120217|ENST00000381577|CD274 ENSG00000120217|ENST00000381577|CD274 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2281799316406 3 422.226326 1263.65715 NaN NaN NaN NaN NaN NaN NaN 15.103 1 15.109 14.609 15.609 0.0057774 0 0 0 0.99897 1 7513 7513 0.77653 0 1 43242 3500 28696 29419 50880 50880 0.0358668544943157 NSKVLVSKHD 10 Unmodified _NSKVLVSKHD_ 0 0 0 REV__nc|ENSG00000164418|Q13002-7|GRIK2 REV__nc|ENSG00000164418|Q13002-7|GRIK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2139587402344 3 376.212017 1125.61422 NaN NaN NaN NaN NaN NaN NaN 55.696 1 55.628 55.128 56.128 -0.068737 0 0 0 0.96271 1 30274 30274 4.7159 0.52642 1 + 43243 29751 28697 29420 50881 50881 0.056439153920109675 NSLAEILLS 9 Unmodified _NSLAEILLS_ 0 0 0 REV__ENST00000581120.1_1_17:61678442-61683801:+|nuORF REV__ENST00000581120.1_1_17:61678442-61683801:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.5424194335938 1 959.540788 958.533512 -0.39145 -0.00037562 -0.21442 -0.00020574 -0.60587 -0.00058136 959.5402364617642 71.332 0.37093 71.332 71.117 71.488 0 48 18 3 0 0 0 0.044011 1 39662 39662 47.749 9.7747 1 6411200 + 43244 20162 28698 29421 50882 50882 0.052586343491157095 NSLGVVPYL 9 Unmodified _NSLGVVPYL_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2715148925781 2 481.271293 960.528032 0.8265 0.00039777 -0.41679 -0.00020059 0.40971 0.00019718 481.27103394290026 51.16 0.43392 51.16 50.978 51.412 0 56 20 4 0 0 0 0.05483 1 28289 28289 43.772 0 1 59630000 43245 761 28699 29422 50883 50883 0.04618955557270965 NSLGVVPYL 9 Unmodified _NSLGVVPYL_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2738037109375 2 481.271293 960.528032 0.84108 0.00040479 0.82485 0.00039697 1.6659 0.00080176 481.2719507150021 57.006 0.3224 51.03 50.859 51.181 -5.9769 44 19 3 0 0 0 0.10247 1 36358 36358 32.786 0 1 86312000 43246 761 28699 29422 50884 50884 0.04618955557270965 NSLGVVPYL 9 Unmodified _NSLGVVPYL_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 481.271293 960.528032 0.0023815 1.1462E-06 1.6595 0.00079866 1.6619 0.00079981 481.2720927339951 51.232 0.12015 51.178 51.087 51.207 -0.053871 0.040912 0.0014562 NaN 43.772 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 663130 43247 761 28699 29422 0.04618955557270965 NSLREVEARY 10 Unmodified _NSLREVEARY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000565278.1_1_16:72763309-72763579:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2162475585938 3 412.882559 1235.62585 -0.64065 -0.00026451 0.21539 8.893E-05 -0.42527 -0.00017559 413.21675505795224 28.76 0.13935 28.76 28.662 28.801 0 9 6 2 0 0 0 0.69153 1 14886 14886 3.8459 2.1036 1 1048700 43248 2759 28700 29423 50885 50885 0.017461124153442142 NSLRSREY 8 Unmodified _NSLRSREY_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7620239257812 2 512.762155 1023.50976 0.25502 0.00013076 0.013417 6.8795E-06 0.26844 0.00013764 512.7622336161511 76.217 0.29059 76.217 76.105 76.396 0 17 11 2 0 0 0 0.80143 1 42387 42387 5.7604 0 1 544870 43249 1039 28701 29424 50886 50886 -0.0010578636471336722 NSLYLLHYFQ 10 Unmodified _NSLYLLHYFQ_ 0 0 0 ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10 ENSG00000241322|ENST00000395906|FBXW10B ENSG00000241322|ENST00000395906|FBXW10B MSMS AL20221201_MKP_PDAC_01 4 433.2255859375 3 433.224034 1296.65027 NaN NaN NaN NaN NaN NaN NaN 42.536 1 37.852 37.352 38.352 -4.6846 0 0 0 0.8671 1 25709 25709 8.4443 1.8209 1 43250 8160 28702 29425 50887 50887 0.013813725688578415 NSMKKDLRLK 10 Unmodified _NSMKKDLRLK_ 0 0 0 ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 ENSG00000128849|ENST00000281282|CGNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5772399902344 3 411.576302 1231.70708 -0.42991 -0.00017694 1.107 0.00045561 0.67709 0.00027867 411.57689722849926 31.675 0.27768 31.705 31.522 31.8 0.030106 23 12 3 0 0 0 0.66658 1 16611 16611 6.6235 0.3891 1 1440000 43251 4095 28703 29426 50888 50888 0.10049096853708761 NSNPVIAEL 9 Unmodified _NSNPVIAEL_ 0 0 0 ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4 ENST00000493669.2_1_1:28733953-28817463:+|nuORF ENST00000493669.2_1_1:28733953-28817463:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7562255859375 2 478.756007 955.497461 0.67331 0.00032235 -0.016567 -7.9314E-06 0.65674 0.00031442 478.7562564426684 60.478 0.39931 60.478 60.225 60.625 0 33 17 3 0 0 0 0.062454 1 33680 33680 41.956 15.072 1 1894000 43252 10245 28704 29427 50889 50889 0.01793177172248761 NSNSVQALL 9 Unmodified _NSNSVQALL_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2530517578125 2 473.253631 944.49271 -0.43665 -0.00020665 -0.49227 -0.00023297 -0.92893 -0.00043962 473.2533725474934 34.312 0.25359 34.312 34.207 34.46 0 29 12 3 0 0 0 0.10247 1 18063 18063 32.786 0.4802 1 6157800 43253 9832 28705 29428 50890 50890 0.018242930294718462 NSPUEUKKA 9 Unmodified _NSPUEUKKA_ 0 0 0 REV__ENSG00000250722|ENST00000514985|SELENOP REV__ENSG00000250722|ENST00000514985|SELENOP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.6865234375 2 538.164871 1074.31519 NaN NaN NaN NaN NaN NaN NaN 15.845 1 15.831 15.331 16.331 -0.014067 0 0 0 0.8622 1 7794 7794 0 0 0 + 43254 24501 28706 29429 50891 50891 -0.21899649630563545 NSPUEUKKA 9 Unmodified _NSPUEUKKA_ 0 0 0 REV__ENSG00000250722|ENST00000514985|SELENOP REV__ENSG00000250722|ENST00000514985|SELENOP MSMS AL20221201_MKP_PDAC_01 4 538.167236328125 2 538.164871 1074.31519 NaN NaN NaN NaN NaN NaN NaN 10.391 1 7.9087 7.4087 8.4087 -2.482 0 0 0 0.8622 1 5239 5239 0 0 0 + 43255 24501 28706 29429 50892 50892 -0.21899649630563545 NSRFTDLHSI 10 Unmodified _NSRFTDLHSI_ 0 0 0 nc|ENSG00000176927|A4FU69-6|EFCAB5;nc|ENSG00000176927|A4FU69-5|EFCAB5;nc|ENSG00000176927|A4FU69-2|EFCAB5;nc|ENSG00000176927|A4FU69-4|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5 nc|ENSG00000176927|A4FU69-6|EFCAB5 nc|ENSG00000176927|A4FU69-6|EFCAB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3023681640625 2 595.301644 1188.58874 0.28803 0.00017146 -1.1272 -0.00067103 -0.83919 -0.00049957 595.3018134119861 55.739 0.29035 55.261 55.069 55.36 -0.47798 41 13 4 0 0 0 0.25982 1 30253 30253 29.841 7.1043 1 3505500 43256 16402 28707 29430 50893 50893 0.0019844086957618856 NSRKFLNFY 9 Unmodified _NSRKFLNFY_ 0 0 0 ENST00000310421.4_1_8:67545049-67545196:-|nuORF ENST00000310421.4_1_8:67545049-67545196:-|nuORF ENST00000310421.4_1_8:67545049-67545196:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.8772583007812 3 396.876857 1187.60874 NaN NaN NaN NaN NaN NaN NaN 1.7835 1 -0.69845 -1.1985 -0.19845 -2.482 0 0 0 0.86004 1 920 920 0.26902 0 1 43257 11677 28708 29431 50894 50894 0.022442366001769187 NSRLVQHKI 9 Unmodified _NSRLVQHKI_ 0 0 0 nc|ENSG00000278970|Q8NB50-2|ZFP62;nc|ENSG00000278970|Q8NB50-3|ZFP62;ENSG00000196670|ENST00000502412|ZFP62 nc|ENSG00000278970|Q8NB50-2|ZFP62 nc|ENSG00000278970|Q8NB50-2|ZFP62 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.299072265625 2 547.825089 1093.63563 0.85135 0.00046639 2.092 0.0011461 2.9434 0.0016124 547.8264607913761 100.5 0.14804 94.325 94.241 94.389 -6.1757 11 8 2 0 0 0 0.20883 1 67223 67223 12.532 3.7861 1 14319000 43258 9858 28709 29432 50895 50895 0.0925534521136342 NSSNDRKFHI 10 Unmodified _NSSNDRKFHI_ 0 0 0 REV__ENSG00000214978|ENST00000399363|GSG1L2 REV__ENSG00000214978|ENST00000399363|GSG1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3048706054688 2 609.304718 1216.59488 -0.61437 -0.00037434 -0.76635 -0.00046694 -1.3807 -0.00084128 609.3042017933593 26.981 0.25009 26.981 26.846 27.096 0 25 11 3 0 0 0 0.52097 1 13871 13871 15.248 1.6336 1 3806500 + 43259 24331 28710 29433 50896 50896 -0.004750408989139032 NSSSIIQVM 9 Oxidation (M) _NSSSIIQVM(Oxidation (M))_ NSSSIIQVM(1) NSSSIIQVM(65) 0 0 1 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7498779296875 2 497.747324 993.480096 -0.097186 -4.8374E-05 2.579 0.0012837 2.4818 0.0012353 497.7489303083365 41.789 0.2752 41.789 41.626 41.901 0 24 13 2 0 0 0 0.018301 1 22554 22554 65.235 10.461 1 4556800 43260 10117 28711 29434 50897 50897 1641 -0.016904864250591345 NSSSIIQVM 9 Unmodified _NSSSIIQVM_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7505187988281 2 489.749867 977.485181 0.59406 0.00029094 1.6026 0.00078485 2.1966 0.0010758 489.75051650074647 67.64 0.40203 61.464 61.288 61.69 -6.1757 31 22 2 0 0 0 0.018301 1 44168 44168 65.235 36.153 1 16650000 43261 10117 28711 29435 50898 50898 -0.004461825624503035 NSTWIKKWTTY 11 Unmodified _NSTWIKKWTTY_ 0 0 0 REV__nc|ENSG00000165097|Q8NB78-2|KDM1B REV__nc|ENSG00000165097|Q8NB78-2|KDM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.8710327148438 2 714.369527 1426.7245 0.43269 0.0003091 0.12202 8.7165E-05 0.55471 0.00039627 714.3695918320752 79.271 0.58743 79.326 79.015 79.602 0.05497 75 22 5 0 0 0 0.62014 1 43704 43704 8.7454 0 1 36394000 + 43262 21978 28712 29436 50899 50899 0.02820715660368478 NSVHIPYFF 9 Unmodified _NSVHIPYFF_ 0 0 0 ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.1907348632812 3 375.190553 1122.54983 0.61772 0.00023176 -0.03305 -1.24E-05 0.58467 0.00021936 375.19055255865885 49.388 0.5243 48.996 48.694 49.218 -0.3923 65 25 3 0 0 0 0.31356 1 26570 26570 16.566 7.5896 1 8819500 43263 14757 28713 29437 50900 50900 -0.006542396941540574 NSVHIPYFF 9 Unmodified _NSVHIPYFF_ 0 0 0 ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.19091796875 3 375.190553 1122.54983 0.24964 9.3662E-05 0.98344 0.00036898 1.2331 0.00046264 375.19092996683486 49.008 0.42324 48.964 48.772 49.195 -0.04369 34 20 3 0 0 0 0.50598 1 26515 26515 7.1017 0 1 2324400 43264 14757 28713 29437 50901 50901 -0.006542396941540574 NSVHIPYFF 9 Unmodified _NSVHIPYFF_ 0 0 0 ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF ENST00000522566.5_1_8:104336957-104336999:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1915893554688 3 375.190553 1122.54983 1.753 0.0006577 0.021586 8.0987E-06 1.7746 0.0006658 375.190717845179 53.693 0.44934 47.889 47.786 48.236 -5.8042 51 27 2 0 0 0 0.27545 2 34065 33937;34065 18.373 12.181 1 19258000 43265 14757 28713 29437 50902;50903 50903 -0.006542396941540574 NSVHKGFV 8 Unmodified _NSVHKGFV_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2409973144531 2 444.240327 886.466101 NaN NaN NaN NaN NaN NaN NaN 55.799 1 55.799 55.299 56.299 0 0 0 0 0.97444 1 31011 31011 0.79363 0 1 + 43266 20417 28714 29438 50904 50904 0.01832648928814251 NSVILVERF 9 Unmodified _NSVILVERF_ 0 0 0 nc|ENSG00000176293|P52742-2|ZNF135;ENSG00000176293|ENST00000313434|ZNF135;nc|ENSG00000176293|P52742-3|ZNF135;nc|ENSG00000176293|P52742-4|ZNF135 nc|ENSG00000176293|P52742-2|ZNF135 nc|ENSG00000176293|P52742-2|ZNF135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8080444335938 2 538.808574 1075.60259 0.11216 6.0435E-05 1.1934 0.000643 1.3055 0.00070344 538.8110168096505 77.143 0.38507 77.193 77.01 77.395 0.05011 61 15 5 0 0 0 0.38785 1 42537 42537 13.042 0 1 20362000 43267 8582 28715 29439 50905 50905 0.06781718368665679 NSWAEEHGVY 10 Unmodified _NSWAEEHGVY_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7587890625 2 596.256902 1190.49925 0.37271 0.00022223 0.42305 0.00025225 0.79576 0.00047448 596.2574505354866 36.301 0.1641 36.301 36.186 36.35 0 11 7 2 0 0 0 0.1942 1 19241 19241 34.402 16.029 1 4439300 43268 8933 28716 29440 50906 50906 -0.08837813809805084 NSWPAPNKAI 10 Unmodified _NSWPAPNKAI_ 0 0 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8643493652344 3 366.529458 1096.56654 0.59566 0.00021833 0.73156 0.00026814 1.3272 0.00048646 366.5296821281745 30.332 0.20477 30.251 30.128 30.333 -0.080429 18 7 3 0 0 0 0.54684 1 15734 15734 8.4443 1.4072 1 2619200 43269 7609 28717 29441 50907 50907 0.022122611917893664 NSYQDSVTF 9 Unmodified _NSYQDSVTF_ 0 0 0 ENSG00000171466|ENST00000453372|ZNF562 ENSG00000171466|ENST00000453372|ZNF562 ENSG00000171466|ENST00000453372|ZNF562 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.731689453125 2 530.732729 1059.4509 0.33595 0.0001783 -0.27552 -0.00014623 0.060434 3.2074E-05 530.7325763242815 47.078 0.29072 47.078 46.941 47.231 0 22 13 2 0 0 0 0.032796 1 25743 25743 53.833 11.993 1 4194800 43270 8103 28718 29442 50908 50908 -0.07644307449731969 NTAFEVAEKY 10 Unmodified _NTAFEVAEKY_ 0 0 0 ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000248746|ENST00000513398|ACTN3 ENST00000513398.1_1_11:66314411-66328094:+|nuORF ENST00000513398.1_1_11:66314411-66328094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2852783203125 2 586.285128 1170.5557 NaN NaN NaN NaN NaN NaN NaN 79.416 1 79.416 78.916 79.916 0 0 0 0 0.90788 1 44114 44114 7.609 1.4032 1 43271 10744 28719 29443 50909 50909 -0.022751859731215518 NTCEHIYEF 9 Carbamidomethyl (C) _NTC(Carbamidomethyl (C))EHIYEF_ NTC(1)EHIYEF NTC(130)EHIYEF 0 1 0 ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.7529907226562 2 606.753138 1211.49172 0.53187 0.00032272 -0.83327 -0.00050559 -0.30139 -0.00018287 606.7529412451942 49.948 0.32932 44.409 44.236 44.565 -5.5391 40 20 3 0 0 0 0.0030184 1 31254 31254 126.57 67.887 1 19824000 43272 8554 28720 29444 50910 50910 823 -0.10556289401756658 NTCRQSNY 8 Unmodified _NTCRQSNY_ 0 0 0 REV__ENSG00000114933|ENST00000403263|INO80D REV__ENSG00000114933|ENST00000403263|INO80D MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2120666503906 2 493.21144 984.408328 0.57856 0.00028535 0.593 0.00029247 1.1716 0.00057783 493.2118079767808 45.529 0.53085 40.574 40.363 40.894 -4.9549 166 35 7 0 0 0 0.78849 1 28027 28027 9.3474 1.4373 1 267220000 + 43273 18943 28721 29445 50911 50911 -0.08449981058925005 NTDEPPMVF 9 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ NTDEPPM(1)VF NTDEPPM(100)VF 0 0 1 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2313842773438 2 533.231507 1064.44846 0.72472 0.00038644 -0.81767 -0.00043601 -0.09295 -4.9564E-05 533.2311831663004 51.056 1.4091 51.056 50.433 51.842 0 215 70 4 0 0 0 0.0085164 5 28202 27878;28090;28202;28317;28425 103.35 92.53 1 73945000 43274 1976 28722 29446 50912;50913;50914;50915;50916 50914 337 -0.08118479179029237 NTDEPPMVF 9 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ NTDEPPM(1)VF NTDEPPM(140)VF 0 0 1 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.232177734375 2 533.231507 1064.44846 1.3332 0.0007109 -0.38759 -0.00020668 0.94561 0.00050423 533.2313919995482 58.915 1.3109 52.841 52.015 53.326 -6.0745 170 72 3 0 0 0 0.0014543 6 37691 37424;37556;37691;37820;37948;38086 136.33 114.59 1 100700000 43275 1976 28722 29446 50917;50918;50919;50920;50921;50922 50919 337 -0.08118479179029237 NTDEPPMVF 9 Oxidation (M) _NTDEPPM(Oxidation (M))VF_ NTDEPPM(1)VF NTDEPPM(130)VF 0 0 1 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1065.459350585938 1 1065.45574 1064.44846 1.2561 0.0013383 -0.58776 -0.00062624 0.66831 0.00071206 1065.4565255228993 58.93 0.80119 52.855 52.28 53.081 -6.0745 60 44 2 0 0 0 0.0024112 1 37610 37610 129.77 96.327 1 14309000 43276 1976 28722 29446 50923 50923 337 -0.08118479179029237 NTDEPPMVF 9 Unmodified _NTDEPPMVF_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.234375 2 525.23405 1048.45355 1.2025 0.00063159 -0.10053 -5.2801E-05 1.102 0.00057879 525.2340573111563 71.472 0.64967 65.296 65.045 65.694 -6.1757 81 33 3 0 0 0 0.012668 2 46837 46715;46837 72.968 53.711 1 93928000 43277 1976 28722 29447 50924;50925 50925 -0.06874175316420406 NTDNERFQM 9 Unmodified _NTDNERFQM_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0-4|NRXN3;nc|ENSG00000021645|Q9HDB5-3|NRXN3;nc|ENSG00000021645|Q9HDB5-4|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.27197265625 2 577.748387 1153.48222 0.42467 0.00024535 2.3546 0.0013604 2.7793 0.0016057 577.7497244124987 51.985 0.32808 51.551 51.381 51.709 -0.43367 47 16 4 0 0 0 0.21302 1 28090 28090 5.7319 1.7875 1 7575600 43278 527 28723 29448 50926 50926 -0.08838057687262335 NTDQGVYL 8 Unmodified _NTDQGVYL_ 0 0 0 nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5 nc|ENSG00000162236|Q13190-4|STX5 nc|ENSG00000162236|Q13190-4|STX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2191772460938 2 455.219257 908.423961 0.57352 0.00026108 -1.0212 -0.00046486 -0.44765 -0.00020378 455.2190883359254 43.212 0.27729 43.212 43.121 43.399 0 19 13 2 0 0 0 0.36356 1 23475 23475 48.346 0.59716 1 4252000 43279 6843 28724 29449 50927 50927 -0.03391371270220134 NTDSPLRY 8 Unmodified _NTDSPLRY_ 0 0 0 ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA;ENST00000453374.2_1_1:160236508-160236577:-|nuORF;ENST00000437336.1_1_1:154350783-154351305:-|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF ENST00000478027.2_1_3:39450050-39453856:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 483.2391662597656 2 483.237981 964.461409 NaN NaN NaN NaN NaN NaN NaN 34.982 1 30.887 30.387 31.387 -4.0951 0 0 0 0.42933 1 20239 20239 49.933 13.806 1 43280 7706 28725 29450 50928 50928 -0.022242800046228695 NTDTKRDRER 10 Unmodified _NTDTKRDRER_ 0 0 0 REV__ENST00000206542.8_1_14:20922909-20923149:-|nuORF REV__ENST00000206542.8_1_14:20922909-20923149:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8882446289062 3 430.888485 1289.64362 NaN NaN NaN NaN NaN NaN NaN 106.86 1 100.69 100.19 101.19 -6.1757 0 0 0 0.99248 1 71510 71510 1.7423 1.2878 1 + 43281 24727 28726 29451 50929 50929 0.010388276701860377 NTEFPVVM 8 Oxidation (M) _NTEFPVVM(Oxidation (M))_ NTEFPVVM(1) NTEFPVVM(57) 0 0 1 REV__ENSG00000064309|ENST00000531738|CDON REV__ENSG00000064309|ENST00000531738|CDON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7253723144531 2 476.725861 951.437169 NaN NaN NaN NaN NaN NaN NaN 45.821 1 45.821 45.321 46.321 0 0 0 0 0.36683 1 25006 25006 57.471 21.427 1 + 43282 17353 28727 29452 50930 50930 1826 -0.04049256482483088 NTEPELIVF 9 Unmodified _NTEPELIVF_ 0 0 0 REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN REV__nc|ENSG00000092853|Q9HAW4-2|CLSPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2797241210938 2 531.279315 1060.54408 0.46702 0.00024812 -0.41658 -0.00022132 0.050441 2.6798E-05 531.2794638886354 68.691 0.78033 68.691 68.266 69.046 0 86 34 4 0 0 0 0.25681 1 38388 38388 19.257 0 1 5403800 + 43283 17916 28728 29453 50931 50931 0.01622617003522464 NTEPVKAKEE 10 Unmodified _NTEPVKAKEE_ 0 0 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7960205078125 2 572.79586 1143.57717 -0.47768 -0.00027362 1.1961 0.00068513 0.71843 0.00041152 572.7965765668562 28.267 0.18142 28.267 28.149 28.33 0 23 8 4 0 0 0 0.17253 1 14564 14564 37.075 2.8529 1 3464900 43284 7662 28729 29454 50932 50932 0.011121990555693628 NTFERPAP 8 Unmodified _NTFERPAP_ 0 0 0 REV__nc|ENSG00000085982|Q9NVE5|USP40 REV__nc|ENSG00000085982|Q9NVE5|USP40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2359619140625 2 466.235242 930.45593 NaN NaN NaN NaN NaN NaN NaN 53.586 1 53.523 53.023 54.023 -0.063423 0 0 0 0.94061 1 29072 29072 12.532 1.7076 1 + 43285 17759 28730 29455 50933 50933 -0.012079587964308303 NTFSTVMTIK 10 Unmodified _NTFSTVMTIK_ 0 0 0 REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.2022094726562 3 381.202242 1140.5849 0.7387 0.00028159 -0.41443 -0.00015798 0.32427 0.00012361 381.2020120119911 75.126 0.34657 74.649 74.474 74.821 -0.47714 45 15 4 0 0 0 0.54684 1 41181 41181 8.4443 0.28878 1 7753100 + 43286 28799 28731 29456 50934 50934 0.020226350514803926 NTIDPSHPM 9 Oxidation (M) _NTIDPSHPM(Oxidation (M))_ NTIDPSHPM(1) NTIDPSHPM(82) 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.229248046875 2 514.229299 1026.44404 -0.31861 -0.00016384 0.025274 1.2997E-05 -0.29334 -0.00015084 514.2295471047993 19.559 0.28267 19.559 19.387 19.67 0 101 39 3 0 0 0 0.0095811 1 9767 9767 81.613 48.827 1 3803400 43287 1569 28732 29457 50935 50935 266 -0.0681194360192876 NTIDPSHPM 9 Oxidation (M) _NTIDPSHPM(Oxidation (M))_ NTIDPSHPM(1) NTIDPSHPM(71) 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.22998046875 2 514.229299 1026.44404 1.0542 0.00054212 0.3225 0.00016584 1.3767 0.00070796 514.2298594431414 21.727 0.36466 18.992 18.775 19.14 -2.7348 44 20 3 0 0 0 0.013323 2 11664 11565;11664 71.134 45.734 1 8034100 43288 1569 28732 29457 50936;50937 50937 266 -0.0681194360192876 NTIDPSHPM 9 Oxidation (M) _NTIDPSHPM(Oxidation (M))_ NTIDPSHPM(1) NTIDPSHPM(71) 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2291870117188 2 514.229299 1026.44404 0.69564 0.00035772 0.18872 9.7043E-05 0.88435 0.00045476 514.2294822654127 22.181 0.40101 19.446 19.256 19.657 -2.7348 50 21 3 0 0 0 0.013323 2 11971 11866;11971 71.134 38.828 1 8625800 43289 1569 28732 29457 50938;50939 50939 266 -0.0681194360192876 NTIDPSHPM 9 Unmodified _NTIDPSHPM_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7558898925781 2 506.231842 1010.44913 -0.056306 -2.8504E-05 0.3202 0.0001621 0.2639 0.00013359 506.2324123554794 29.107 0.2993 29.107 28.903 29.202 0 30 14 3 0 0 0 0.20139 1 15039 15039 10.824 2.9138 1 1628400 43290 1569 28732 29458 50940 50940 -0.05567639739308561 NTIDPSHPM 9 Unmodified _NTIDPSHPM_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2315368652344 2 506.231842 1010.44913 1.16 0.00058722 -1.797 -0.00090968 -0.63698 -0.00032246 506.2308146737143 33.61 0.45964 29.625 29.434 29.894 -3.9853 70 25 4 0 0 0 0.10734 1 19297 19297 32.305 15.363 1 34441000 43291 1569 28732 29458 50941 50941 -0.05567639739308561 NTIGFEFL 8 Unmodified _NTIGFEFL_ 0 0 0 REV__nc|ENSG00000273749|Q7L576-2|CYFIP1 REV__nc|ENSG00000273749|Q7L576-2|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7430114746094 2 470.742368 939.470183 0.39576 0.0001863 0.24151 0.00011369 0.63727 0.00029999 470.74260995701064 49.009 0.25687 48.637 48.499 48.755 -0.37172 25 12 3 0 0 0 0.48669 1 26309 26309 36.044 5.8194 1 3509600 + 43292 30002 28733 29459 50942 50942 -0.001973063681361964 NTIGNIEEIAY 11 Unmodified _NTIGNIEEIAY_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8089599609375 2 618.808968 1235.60338 0.26648 0.0001649 0.75269 0.00046577 1.0192 0.00063067 618.8093587900661 65.461 0.25426 65.461 65.296 65.55 0 23 9 3 0 0 0 0.4121 1 36476 36476 32.786 8.7651 1 2685200 43293 1363 28734 29460 50943 50943 -0.004995317729253657 NTIKTNWDTF 10 Unmodified _NTIKTNWDTF_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3043823242188 2 620.303852 1238.59315 0.73751 0.00045748 -0.43466 -0.00026962 0.30285 0.00018786 620.3037543929083 49.636 0.32869 49.636 49.465 49.793 0 35 14 3 0 0 0 0.16361 1 27311 27311 38.176 8.335 1 7132600 43294 6155;16276 28735 29461 50944 50944 -0.016600947075403383 NTIKTNWDTF 10 Unmodified _NTIKTNWDTF_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.304931640625 2 620.303852 1238.59315 0.86081 0.00053396 0.58126 0.00036056 1.4421 0.00089452 620.3040312361234 50.121 0.24397 49.729 49.607 49.851 -0.3923 21 11 3 0 0 0 0.56348 1 26995 26995 13.042 2.2185 1 2115900 43295 6155;16276 28735 29461 50945 50945 -0.016600947075403383 NTIMCFQKM 9 Unmodified _NTIMCFQKM_ 0 0 0 ENST00000566604.5_1_16:8895764-8898668:+|nuORF ENST00000566604.5_1_16:8895764-8898668:+|nuORF ENST00000566604.5_1_16:8895764-8898668:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.255126953125 2 558.255948 1114.49734 0.33771 0.00018853 1.0163 0.00056734 1.354 0.00075587 558.2567870454889 41.44 0.42207 36.832 36.655 37.077 -4.6079 56 27 3 0 0 0 0.49272 1 24839 24839 7.9102 0 1 41219000 43296 15421 28736 29462 50946 50946 -0.055326054152828874 NTINLIHTF 9 Unmodified _NTINLIHTF_ 0 0 0 ENSG00000163466|ENST00000315717|ARPC2 ENSG00000163466|ENST00000315717|ARPC2 ENSG00000163466|ENST00000315717|ARPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7924194335938 2 536.792924 1071.57129 0.27463 0.00014742 0.64843 0.00034807 0.92307 0.0004955 536.7932189888977 63.216 0.28248 62.73 62.603 62.885 -0.48617 29 12 3 0 0 0 0.020316 1 34452 34452 78.728 36.888 1 2986500 43297 6996 28737 29463 50947 50947 0.038371453345462214 NTIPVPVL 8 Unmodified _NTIPVPVL_ 0 0 0 REV__ENSG00000229314|ENST00000259396|ORM1 REV__ENSG00000229314|ENST00000259396|ORM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7641906738281 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 77.501 1 77.501 77.001 78.001 0 0 0 0 0.97444 1 43084 43084 2.0598 0.21551 1 + 43298 24397 28738 29464 50948 50948 0.07995874391190227 NTIVPDYIE 9 Unmodified _NTIVPDYIE_ 0 0 0 ENST00000422840.6_1_16:74524951-74525005:-|nuORF ENST00000422840.6_1_16:74524951-74525005:-|nuORF ENST00000422840.6_1_16:74524951-74525005:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2725830078125 2 532.268947 1062.52334 NaN NaN NaN NaN NaN NaN NaN 71.876 1 71.876 71.376 72.376 0 0 0 0 0.34649 1 40029 40029 22.736 5.794 1 43299 13121 28739 29465 50949 50949 -0.005419733761300449 NTKVDFFAVEL 11 Unmodified _NTKVDFFAVEL_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0-4|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9Y4C0-3|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.8373413085938 2 641.837528 1281.6605 -0.023477 -1.5068E-05 0.53718 0.00034478 0.5137 0.00032971 641.8378281484222 81.246 0.37039 81.246 81.046 81.416 0 54 17 4 0 0 0 0.37147 1 45137 45137 34.932 14.518 1 3690700 43300 527 28740 29466 50950 50950 0.030939355034433902 NTLKLKGF 8 Unmodified _NTLKLKGF_ 0 0 0 REV__ENSG00000073861|ENST00000177694|TBX21;REV__nc|ENSG00000163508|O95936|EOMES REV__nc|ENSG00000163508|O95936|EOMES MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.5565185546875 1 920.556379 919.549102 1.4058 0.0012941 -0.83592 -0.00076951 0.56987 0.0005246 920.5562541973828 104.54 0.062798 98.36 98.313 98.376 -6.1757 7 4 2 0 0 0 0.80722 1 70000 70000 2.3027 0 1 4706700 + 43301 21772;17543 28741 29467 50951 50951 0.08610965656794178 NTLPVPEA 8 Unmodified _NTLPVPEA_ 0 0 0 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 ENSG00000181754|ENST00000369864|AMIGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.7272033691406 2 420.726718 839.438883 0.55749 0.00023455 -0.27549 -0.00011591 0.28199 0.00011864 420.726632358395 54.092 0.32532 54.092 53.945 54.271 0 25 14 2 0 0 0 0.29252 1 29984 29984 56.177 1.4035 1 4441600 43302 8993 28742 29468 50952 50952 0.012741205977590653 NTLQSILAI 9 Unmodified _NTLQSILAI_ 0 0 0 ENSG00000214415|ENST00000398291|GNAT3;ENSG00000114349|ENST00000232461|GNAT1 ENSG00000214415|ENST00000398291|GNAT3 ENSG00000214415|ENST00000398291|GNAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7896728515625 2 486.78985 971.565146 0.2442 0.00011887 3.5905 0.0017478 3.8347 0.0018667 486.7913502629176 76.413 0.34314 75.933 75.71 76.053 -0.47945 35 18 3 0 0 0 0.036857 1 41876 41876 51.63 0 1 5365900 43303 10493 28743 29469 50953 50953 0.07822627103041668 NTLRLQQQRQL 11 Unmodified _NTLRLQQQRQL_ 0 0 0 ENSG00000162415|ENST00000359600|ZSWIM5 ENSG00000162415|ENST00000359600|ZSWIM5 ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2041931152344 4 350.20475 1396.78989 0.16719 5.8552E-05 -0.03396 -1.1893E-05 0.13323 4.6659E-05 350.20466725610015 48.748 0.35704 48.704 48.415 48.772 -0.04369 25 17 2 0 0 0 0.73349 1 26332 26332 1.1098 0.6038 1 2978900 43304 6857 28744 29470 50954 50954 0.10737129906078735 NTLRLWKKAYF 11 Unmodified _NTLRLWKKAYF_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2107849121094 4 360.709403 1438.8085 1.0855 0.00039154 -0.052607 -1.8976E-05 1.0329 0.00037257 361.2105005158429 50.463 0.66655 50.414 49.966 50.633 -0.048828 66 32 3 0 0 0 0.74096 1 27301 27301 0.40827 0 1 1898300 43305 9988 28745 29471 50955 50955 0.1066529154793443 NTLTKAKVKL 10 Unmodified _NTLTKAKVKL_ 0 0 0 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 ENSG00000092054|ENST00000355349|MYH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.361328125 2 558.360973 1114.70739 -0.28362 -0.00015837 0.86943 0.00048545 0.5858 0.00032709 558.3612227338491 103.34 0.26189 103.3 103.16 103.43 -0.047928 28 10 3 0 0 0 0.72247 1 57383 57383 0.40072 0 1 1614700 43306 1602 28746 29472 50956 50956 0.15462839845235976 NTMATTKSF 9 Unmodified _NTMATTKSF_ 0 0 0 REV__ENST00000480798.1_1_20:24940328-24940427:+|nuORF REV__ENST00000480798.1_1_20:24940328-24940427:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7078247070312 2 500.742042 999.469531 NaN NaN NaN NaN NaN NaN NaN 84.968 1 84.467 83.967 84.967 -0.5015 0 0 0 0.84737 1 46493 46493 1.8442 1.0506 1 + 43307 27680 28747 29473 50957 50957 -0.03022469079496659 NTNEGGGEQQQ 11 Unmodified _NTNEGGGEQQQ_ 0 0 0 REV__nc|ENSG00000007372|P26367|PAX6 REV__nc|ENSG00000007372|P26367|PAX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8302612304688 3 387.830412 1160.46941 -0.61642 -0.00023907 -0.2904 -0.00011263 -0.90682 -0.00035169 387.8302448176671 28.715 0.19905 28.715 28.621 28.82 0 17 9 2 0 0 0 0.69316 1 14848 14848 2.2527 0 1 3846600 + 43308 16773 28748 29474 50958 50958 -0.10440797545788882 NTNEGGGEQQQ 11 Unmodified _NTNEGGGEQQQ_ 0 0 0 REV__nc|ENSG00000007372|P26367|PAX6 REV__nc|ENSG00000007372|P26367|PAX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.831298828125 3 387.830412 1160.46941 1.0463 0.00040577 -1.0205 -0.00039577 0.025784 9.9996E-06 387.83015259680286 32.703 0.37636 28.846 28.652 29.028 -3.8562 84 19 5 0 0 0 0.69316 1 18580 18580 2.2527 0 1 75516000 + 43309 16773 28748 29474 50959 50959 -0.10440797545788882 NTNEVVIRY 9 Unmodified _NTNEVVIRY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2943725585938 2 554.293288 1106.57202 0.4173 0.00023131 1.3003 0.00072076 1.7176 0.00095206 554.2935246063981 40.021 0.31928 40.021 39.832 40.151 0 41 15 4 0 0 0 3.6865E-10 2 21442 21442;21550 168.66 104.7 1 31047000 43310 9762 28749 29475 50960;50961 50960 0.0229993998361806 NTNEVVIRY 9 Unmodified _NTNEVVIRY_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2940673828125 2 554.293288 1106.57202 0.59966 0.00033239 0.74091 0.00041068 1.3406 0.00074307 554.2937379949188 44.886 0.44849 40.034 39.768 40.216 -4.852 81 34 3 0 0 0 2.2236E-06 2 27445 27313;27445 157.8 108.24 1 53913000 43311 9762 28749 29475 50962;50963 50963 0.0229993998361806 NTQQMRHLP 9 Unmodified _NTQQMRHLP_ 0 0 0 REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4 REV__nc|ENSG00000162148|Q7Z5V6-2|SAXO4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7456665039062 2 562.785107 1123.55566 -0.39316 -0.00022127 -0.53042 -0.00029852 -0.92359 -0.00051978 562.7841518723543 34.172 0.24407 34.172 34.14 34.384 0 19 12 2 0 0 0 0.20358 1 18013 18013 3.2813 0 1 2414200 + 43312 21628 28750 29476 50964 50964 -0.0011746445413791662 NTQRYVKNMD 10 Unmodified _NTQRYVKNMD_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8874206542969 3 423.539916 1267.59792 -0.42347 -0.00017936 2.4642 0.0010437 2.0408 0.00086434 423.54107784683555 35.657 0.49142 35.435 35.107 35.599 -0.2224 27 21 2 0 0 0 0.23745 1 18652 18652 3.0723 0.81953 1 3011200 + 43313 29813 28751 29477 50965 50965 -0.025175338364078925 NTRLDYKEI 9 Unmodified _NTRLDYKEI_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5827026367188 3 384.540022 1150.59824 2.0526 0.0007893 -0.68113 -0.00026192 1.3715 0.00052738 384.5395113707769 41.782 0.34622 37.174 36.999 37.345 -4.6079 34 21 2 0 0 0 0.21822 1 25057 25057 0.96228 0 1 9608500 + 43314 21023 28752 29478 50966 50966 0.028962091551193225 NTRLDYKEI 9 Unmodified _NTRLDYKEI_ 0 0 0 REV__ENSG00000150361|ENST00000377844|KLHL1 REV__ENSG00000150361|ENST00000377844|KLHL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.540022 1150.59824 0.35193 0.00013533 0.34358 0.00013212 0.69552 0.00026745 384.5401062584012 36.864 0.26729 36.864 36.71 36.977 0 -0.1549 0.00024935 NaN 0.96228 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3207300 + 43315 21023 28752 29478 0.028962091551193225 NTSAAIQAY 9 Unmodified _NTSAAIQAY_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000471692.1_1_5:137527956-137534147:-|nuORF ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4585571289062 1 938.457787 937.45051 -0.45772 -0.00042955 -0.056933 -5.343E-05 -0.51465 -0.00048298 938.4581565610926 33.266 0.18186 33.266 33.183 33.365 0 11 8 2 0 0 0 0.094149 1 17426 17426 34.402 0 1 758110 43316 1638 28753 29479 50967 50967 -0.020716823789143746 NTSSNHENSDL 11 Unmodified _NTSSNHENSDL_ 0 0 0 ENST00000533808.5_1_6:135518016-135520664:+|nuORF;ENST00000533837.5_1_6:135518016-135539115:+|nuORF;ENST00000529262.5_1_6:135518089-135539115:+|nuORF;nc|ENSG00000118513|P10242-11|MYB;nc|ENSG00000118513|P10242-10|MYB;nc|ENSG00000118513|P10242-9|MYB;nc|ENSG00000118513|P10242-2|MYB;nc|ENSG00000118513|P10242|MYB;nc|ENSG00000118513|P10242-6|MYB;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB ENST00000533808.5_1_6:135518016-135520664:+|nuORF ENST00000533808.5_1_6:135518016-135520664:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5053405761719 3 406.505817 1216.49562 0.3869 0.00015728 -0.69461 -0.00028236 -0.30771 -0.00012509 406.5052601285384 24.593 0.25792 21.71 21.559 21.817 -2.8831 20 13 2 0 0 0 0.71341 1 13378 13378 1.2148 0.14337 1 3267400 43317 3377 28754 29480 50968 50968 -0.10396528374303671 NTTATVHLAM 10 Unmodified _NTTATVHLAM_ 0 0 0 REV__ENST00000517764.1_1_8:94934348-94934420:+|nuORF REV__ENST00000517764.1_1_8:94934348-94934420:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.7695922851562 2 529.768591 1057.52263 NaN NaN NaN NaN NaN NaN NaN 25.511 1 22.628 22.128 23.128 -2.8831 0 0 0 0.59691 1 13972 13972 21.537 4.4241 1 + 43318 28228 28755 29481 50969 50969 -0.0038309129683966603 NTTFPGPT 8 Unmodified _NTTFPGPT_ 0 0 0 REV__nc|ENSG00000189348|A6NNH2|FAM90A27P REV__nc|ENSG00000189348|A6NNH2|FAM90A27P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.8440246582031 2 417.703243 833.391933 0.37105 0.00015499 -0.28562 -0.00011931 0.085427 3.5683E-05 417.7030899759399 53.96 0.36138 53.493 53.265 53.626 -0.46664 24 17 2 0 0 0 8.7369 1 29188 29188 23.148 2.6948 1 1418600 + 43319 29873 28756 29482 50970 50970 -0.031427389533746464 NTVDSIESF 9 Unmodified _NTVDSIESF_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2350463867188 2 506.235104 1010.45566 0.51439 0.0002604 -0.66251 -0.00033539 -0.14812 -7.4984E-05 506.2345782198082 52.739 0.23977 52.739 52.596 52.836 0 16 10 2 0 0 0 0.047196 1 29183 29183 46.021 20.622 1 2756600 43320 3655 28757 29483 50971 50971 -0.04915423306931643 NTVFKSVEEL 10 Unmodified _NTVFKSVEEL_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.309814453125 2 583.308603 1164.60265 0.85295 0.00049753 0.16505 9.6274E-05 1.018 0.00059381 583.3085617449939 54.388 0.39454 54.388 54.246 54.641 0 43 17 3 0 0 0 0.10424 2 30161 30161;30272 45.7 9.5726 1 13158000 43321 3369 28758 29484 50972;50973 50972 0.026936735780054732 NTVQFLEEY 9 Unmodified _NTVQFLEEY_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7725830078125 2 571.771854 1141.52915 0.56012 0.00032026 -0.99519 -0.00056902 -0.43507 -0.00024876 571.7718969092131 66.581 0.27936 66.581 66.446 66.725 0 32 12 3 0 0 0 0.024882 1 37150 37150 58.679 26.373 1 5142200 43322 10560 28759 29485 50974 50974 -0.03594874864461417 NTVSNSSNI 9 Unmodified _NTVSNSSNI_ 0 0 0 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2259521484375 2 468.225071 934.435589 1.1081 0.00051882 0.45666 0.00021382 1.5647 0.00073265 468.2252022267599 54.677 0.30349 54.677 54.462 54.765 0 29 12 3 0 0 0 0.49272 1 30303 30303 7.9102 7.9102 1 3463600 + 43323 18189 28760 29486 50975 50975 -0.034251742468882185 NTWEMLNQFT 10 Unmodified _NTWEMLNQFT_ 0 0 0 REV__nc|ENSG00000166396|O75635-2|SERPINB7 REV__nc|ENSG00000166396|O75635-2|SERPINB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.2896728515625 2 642.289888 1282.56522 -0.39159 -0.00025151 -0.49599 -0.00031857 -0.88757 -0.00057008 642.2896777328451 56.267 0.54905 56.267 55.969 56.518 0 76 25 4 0 0 0 0.56348 2 31190 31190;31297 13.042 1.5478 1 22557000 + 43324 22113 28761 29487 50976;50977 50976 -0.06475740959285758 NTYRFLTF 8 Unmodified _NTYRFLTF_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20;ENST00000551825.1_1_12:101673946-101684681:+|nuORF ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2749633789062 2 531.274367 1060.53418 0.30515 0.00016212 -0.86616 -0.00046017 -0.56101 -0.00029805 531.2739664552901 73.72 0.39646 73.764 73.589 73.985 0.043983 47 18 3 0 0 0 0.70294 1 40585 40585 16.942 1.0951 1 15019000 43325 3541 28762 29488 50978 50978 0.0063347378879825555 NTYYSNTEF 9 Unmodified _NTYYSNTEF_ 0 0 0 ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant;ENSG00000165997|ENST00000377275|ARL5B;ENSG00000141748|ENST00000269586|ARL5C ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant;ENSG00000141748|ENST00000269586|ARL5C ARL5B|p.A100Qfs*28|1|0.13|ENSG00000165997|chr10:18672660-18672666|ACTAGCT/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.6630554199219 3 380.161099 1137.46147 -0.79085 -0.00030065 -1.9732 -0.00075013 -2.764 -0.0010508 380.4949910230645 55.573 0.20264 55.573 55.389 55.592 0 13 8 2 0 0 0 0.21473 1 30789 30789 2.4985 1.5362 1 1729200 43326 38;5373 28763 29489 50979 50979 -0.10176324795293112 NVAALQERY 9 Unmodified _NVAALQERY_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.30224609375 2 532.28018 1062.54581 0.94921 0.00050524 -0.46908 -0.00024968 0.48013 0.00025556 532.2794491902232 38.15 0.44331 33.781 33.473 33.916 -4.3689 59 26 3 0 0 0 0.17716 1 22331 22331 22.658 3.4011 1 33979000 43327 980 28764 29490 50980 50980 0.01703670812139535 NVADDYIHTA 10 Unmodified _NVADDYIHTA_ 0 0 0 ENSG00000089006|ENST00000377759|SNX5;ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENST00000547000.1_1_12:101462478-101462640:+|nuORF ENSG00000089006|ENST00000377759|SNX5 ENSG00000089006|ENST00000377759|SNX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.758056640625 2 559.759278 1117.504 -0.039228 -2.1958E-05 0.4974 0.00027842 0.45817 0.00025647 559.7596021586568 22.349 0.17989 22.349 22.264 22.444 0 17 8 3 0 0 0 0.54684 1 11346 11346 13.906 3.8321 1 2138400 43328 1506 28765 29491 50981 50981 -0.05004929667029501 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.517333984375 3 363.517218 1087.52982 -0.36498 -0.00013268 -0.54148 -0.00019684 -0.90647 -0.00032952 363.51698205971576 24.24 0.69925 24.24 23.852 24.551 0 113 38 5 0 0 0 0.2324 2 12330 12330;12437 14.957 8.7228 1 298290000 43329 1877 28766 29492 50982;50983 50982 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7723999023438 2 544.772188 1087.52982 -0.23072 -0.00012569 -0.64535 -0.00035157 -0.87607 -0.00047726 544.7718197592429 24.265 0.3082 24.265 24.078 24.386 0 70 19 4 0 0 0 0.026499 2 12331 12331;12440 57.249 31.228 1 95125000 43330 1877 28766 29492 50984;50985 50984 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.77197265625 2 544.772188 1087.52982 -0.10674 -5.8147E-05 1.247 0.00067936 1.1403 0.00062121 545.2742264649364 24.442 0.12143 24.44 24.357 24.478 -0.0016766 6 4 2 0 0 0 0.076472 1 12499 12499 38.615 23.366 1 3979100 43331 1877 28766 29492 50986 50986 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5172729492188 3 363.517218 1087.52982 0.10605 3.8551E-05 0.6616 0.0002405 0.76765 0.00027906 363.5173248212291 24.445 0.19449 24.444 24.338 24.532 -0.0016766 15 7 3 0 0 0 0.34134 1 12507 12507 10.899 6.0019 1 10649000 43332 1877 28766 29492 50987 50987 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.517333984375 3 363.517218 1087.52982 0.11862 4.3122E-05 0.017793 6.4679E-06 0.13642 4.959E-05 363.5171764009825 24.187 0.2296 24.208 24.063 24.293 0.021185 14 8 2 0 0 0 0.34134 1 12459 12459 10.899 5.4962 1 11096000 43333 1877 28766 29492 50988 50988 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2738647460938 2 544.772188 1087.52982 0.19495 0.0001062 0.026238 1.4294E-05 0.22119 0.0001205 544.7720848923761 24.162 0.20226 24.184 24.091 24.293 0.021185 16 7 3 0 0 0 0.1685 1 12463 12463 26.268 8.1218 1 6409800 43334 1877 28766 29492 50989 50989 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5177001953125 3 363.517218 1087.52982 1.1357 0.00041283 -0.5408 -0.00019659 0.59486 0.00021624 363.51695306287144 27.325 0.53706 24.288 24.004 24.541 -3.0365 104 26 5 0 0 0 0.1685 3 15013 15013;15122;15234 19.626 11.182 1 1344400000 43335 1877 28766 29492 50990;50991;50992 50990 -0.0104403542475211 NVADLHEKY 9 Unmodified _NVADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7725830078125 2 544.772188 1087.52982 0.37445 0.00020399 -0.41582 -0.00022653 -0.041377 -2.2541E-05 544.7719277243895 27.326 0.47878 24.289 24.04 24.519 -3.0365 77 23 4 0 0 0 0.0088668 3 15246 15027;15134;15246 87.258 41.518 1 486630000 43336 1877 28766 29492 50993;50994;50995 50995 -0.0104403542475211 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7922973632812 2 502.792392 1003.57023 0.663 0.00033335 -0.67039 -0.00033707 -0.0073982 -3.7198E-06 502.7922084349808 66.649 0.40767 66.649 66.47 66.878 0 58 18 4 0 0 0 0.0089732 2 37132 37132;37234 86.332 49.826 1 25162000 43337 3388 28767 29493 50996;50997 50996 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7928466796875 2 502.792392 1003.57023 -0.016217 -8.1539E-06 -0.71705 -0.00036053 -0.73327 -0.00036868 502.79195368118917 67.128 1.4702 66.646 66.378 67.848 -0.48221 160 67 5 0 0 0 0.012668 4 36775 36575;36670;36775;36881 72.968 41.224 1 658670000 43338 3388 28767 29493 50998;50999;51000;51001 51000 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7934265136719 2 502.792392 1003.57023 0.90657 0.00045582 -0.64246 -0.00032302 0.26412 0.0001328 502.792039846753 66.604 1.0282 66.613 66.398 67.427 0.0095596 108 50 5 0 0 0 0.012668 2 36475 36475;36580 72.968 46.7 1 383920000 43339 3388 28767 29493 51002;51003 51002 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7930297851562 2 502.792392 1003.57023 1.1384 0.00057237 -0.17894 -8.9969E-05 0.95944 0.0004824 502.7923579493114 71.764 1.4056 65.588 65.007 66.412 -6.1757 293 73 5 0 0 0 0.0082475 7 47011 46624;46753;46875;47011;47157;47278;47400 92.653 59.868 1 1329900000 43340 3388 28767 29493 51004;51005;51006;51007;51008;51009;51010 51007 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7926330566406 2 502.792392 1003.57023 0.98293 0.00049421 0.16781 8.4371E-05 1.1507 0.00057858 502.79246095082016 74.03 3.0867 67.854 66.412 69.499 -6.1757 558 160 4 0 0 0 0.0099157 17 47521 47521;47638;47764;47877;47999;48113;48225;48342;48467;48593;48714;48841;48967;49094;49211;49338;49462 80.676 46.7 1 783030000 43341 3388 28767 29493 51011;51012;51013;51014;51015;51016;51017;51018;51019;51020;51021;51022;51023;51024;51025;51026;51027 51011 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.79248046875 2 502.792392 1003.57023 0.85299 0.00042888 1.5554 0.00078204 2.4084 0.0012109 502.7934191779747 75.939 0.56041 69.764 69.48 70.041 -6.1757 44 29 3 0 0 0 0.044296 2 49710 49710;49833 47.594 27.18 1 14519000 43342 3388 28767 29493 51028;51029 51028 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20221201_MKP_PDAC_01 4 502.79248046875 2 502.792392 1003.57023 NaN NaN NaN NaN NaN NaN NaN 76.68 1 70.504 70.004 71.004 -6.1757 0 0 0 0.035688 1 50157 50157 63.961 25.785 1 43343 3388 28767 29493 51030 51030 0.06858930965665877 NVADVVIKF 9 Unmodified _NVADVVIKF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20221201_MKP_PDAC_01 4 502.7916259765625 2 502.792392 1003.57023 NaN NaN NaN NaN NaN NaN NaN 76.882 1 70.706 70.206 71.206 -6.1757 0 0 0 0.054801 1 50285 50285 55.503 32.766 1 43344 3388 28767 29493 51031 51031 0.06858930965665877 NVAGLVLAD 9 Unmodified _NVAGLVLAD_ 0 0 0 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 871.4888305664062 1 871.488359 870.481082 -0.20281 -0.00017674 1.2324 0.001074 1.0296 0.0008973 871.4894160861908 64.929 0.27855 64.445 64.317 64.595 -0.48428 20 12 2 0 0 0 0.10734 1 35426 35426 32.305 2.0807 1 1047300 + 43345 18549 28768 29494 51032 51032 0.04066096006124553 NVAGLVLAD 9 Unmodified _NVAGLVLAD_ 0 0 0 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 REV__nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.2480163574219 2 436.247818 870.481082 0.3629 0.00015831 0.24602 0.00010733 0.60892 0.00026564 436.2480279763085 64.986 0.36568 64.501 64.274 64.64 -0.48428 26 16 2 0 0 0 0.16226 1 35450 35450 26.884 0.54238 1 2683300 + 43346 18549 28768 29494 51033 51033 0.04066096006124553 NVAILLSSY 9 Unmodified _NVAILLSSY_ 0 0 0 ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3 ENSG00000183625|ENST00000395940|CCR3 ENSG00000183625|ENST00000395940|CCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2778930664062 2 490.276575 978.538597 0.67931 0.00033305 0.61773 0.00030286 1.297 0.00063591 490.2768103672992 71.51 0.49036 71.033 70.949 71.439 -0.47735 24 19 2 0 0 0 0.32871 1 39189 39189 15.847 0 1 684250 43347 9170 28769 29495 51034 51034 0.04846938211721863 NVAKFHCP 8 Unmodified _NVAKFHCP_ 0 0 0 ENSG00000102974|ENST00000264010|CTCF;nc|ENSG00000102974|P49711-2|CTCF ENSG00000102974|ENST00000264010|CTCF ENSG00000102974|ENST00000264010|CTCF MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.229736328125 2 458.228905 914.443257 1.3319 0.00061033 -0.59055 -0.00027061 0.74139 0.00033973 458.22852195884224 40.938 0.36385 36.331 36.165 36.528 -4.6079 40 22 3 0 0 0 0.61462 2 24465 24465;24616 24.674 24.674 1 16547000 43348 2087 28770 29496 51035;51036 51035 -0.01738693460322338 NVATILATF 9 Unmodified _NVATILATF_ 0 0 0 ENSG00000120798|ENST00000333003|NR2C1;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;nc|ENSG00000120798|P13056-2|NR2C1;nc|ENSG00000120798|P13056-3|NR2C1 ENSG00000120798|ENST00000333003|NR2C1 ENSG00000120798|ENST00000333003|NR2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2724914550781 2 475.271293 948.528032 0.41147 0.00019556 0.017254 8.2003E-06 0.42873 0.00020376 475.2711375015724 99.708 0.17167 93.533 93.416 93.588 -6.1757 14 10 2 0 0 0 0.024882 1 66479 66479 58.679 22.552 1 27889000 43349 3540 28771 29497 51037 51037 0.05170955557287016 NVATTLPSY 9 Unmodified _NVATTLPSY_ 0 0 0 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4903564453125 1 965.493838 964.486562 -0.028753 -2.7761E-05 -2.4201 -0.0023366 -2.4488 -0.0023643 965.4930321236077 48.259 0.34164 48.259 48.092 48.433 0 32 16 3 0 0 0 0.032796 1 26409 26409 53.833 27.565 1 10053000 43350 4335 28772 29498 51038 51038 0.002897747979545784 NVATTLPSY 9 Unmodified _NVATTLPSY_ 0 0 0 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2499084472656 2 483.250557 964.486562 NaN NaN NaN NaN NaN NaN NaN 48.122 1 48.122 47.622 48.622 0 0 0 0 0.025332 1 26382 26382 71.922 24.174 1 43351 4335 28772 29498 51039 51039 0.002897747979545784 NVATTLPSY 9 Unmodified _NVATTLPSY_ 0 0 0 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.25 2 483.250557 964.486562 0.45998 0.00022228 -2.187 -0.0010569 -1.7271 -0.00083461 483.25001654079995 48.64 0.25326 48.268 48.081 48.335 -0.37172 22 13 2 0 0 0 0.015445 1 26072 26072 68.081 33.978 1 10867000 43352 4335 28772 29498 51040 51040 0.002897747979545784 NVATTLPSY 9 Unmodified _NVATTLPSY_ 0 0 0 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 ENSG00000131507|ENST00000253814|NDFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2509155273438 2 483.250557 964.486562 0.73804 0.00035666 -1.92 -0.00092783 -1.1819 -0.00057117 483.2504013051873 55.741 0.72057 49.82 49.474 50.195 -5.9211 82 42 3 0 0 0 0.013041 1 35568 35568 71.922 37.82 1 127190000 43353 4335 28772 29498 51041 51041 0.002897747979545784 NVAWVQYE 8 Unmodified _NVAWVQYE_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7423095703125 2 504.742899 1007.47125 NaN NaN NaN NaN NaN NaN NaN 69.936 1 69.936 69.436 70.436 0 0 0 0 0.95973 1 38962 38962 8.5933 2.2392 1 + 43354 17207 28773 29499 51042 51042 -0.03219091999244483 NVCELDLVF 9 Carbamidomethyl (C) _NVC(Carbamidomethyl (C))ELDLVF_ NVC(1)ELDLVF NVC(79)ELDLVF 0 1 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7724609375 2 554.7708 1107.52705 1.3684 0.00075914 1.5626 0.00086687 2.9309 0.001626 555.2735511825368 98.409 0.29446 92.233 92.057 92.352 -6.1757 58 19 4 0 0 0 0.010611 2 65186 65186;65339 78.728 30.979 1 26993000 43355 664 28774 29500 51043;51044 51043 46 -0.022416268739334555 NVCLECLFYW 10 Unmodified _NVCLECLFYW_ 0 0 0 REV__ENST00000394729.6_1_3:53226324-53226528:+|nuORF REV__ENST00000394729.6_1_3:53226324-53226528:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.5292053222656 3 430.52796 1288.56205 NaN NaN NaN NaN NaN NaN NaN 94.393 1 88.217 87.717 88.717 -6.1757 0 0 0 1.0024 1 62518 62518 0.13989 0 1 + 43356 26453 28775 29501 51045 51045 -0.07068707337634805 NVDPLMWTDEG 11 Unmodified _NVDPLMWTDEG_ 0 0 0 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.1894226074219 3 426.188661 1275.54415 NaN NaN NaN NaN NaN NaN NaN 17.283 1 17.283 16.783 17.783 0 0 0 0 0.94184 1 8503 8503 0.40827 0 1 + 43357 21115 28776 29502 51046 51046 -0.08259751058790243 NVDVDLESL 9 Unmodified _NVDVDLESL_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2489318847656 2 502.250754 1002.48696 0.03884 1.9507E-05 -1.8933 -0.00095091 -1.8545 -0.0009314 502.2497808502806 23.097 0.14775 23.097 23.015 23.163 0 13 7 2 0 0 0 0.094149 1 11769 11769 34.402 4.1769 1 623910 + 43358 21275 28777 29503 51047 51047 -0.014188502728529784 NVEGYRREI 9 Unmodified _NVEGYRREI_ 0 0 0 ENSG00000047410|ENST00000367478|TPR;ENST00000469463.1_1_1:186321098-186322975:-|nuORF ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2957153320312 2 568.296362 1134.57817 0.62435 0.00035482 2.2323 0.0012686 2.8566 0.0016234 568.800367065338 84.538 1.3627 78.362 77.403 78.766 -6.1757 157 76 3 0 0 0 0.14 1 55402 55402 29.082 5.061 1 46088000 43359 683 28778 29504 51048 51048 0.016264582151279683 NVELLPAA 8 Unmodified _NVELLPAA_ 0 0 0 ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.7372436523438 2 413.737086 825.459619 -0.09966 -4.1233E-05 -0.84425 -0.0003493 -0.94391 -0.00039053 413.73678965521816 69.991 0.56115 69.991 69.816 70.377 0 122 58 3 0 0 0 0.50673 1 38947 38947 34.102 1.9855 1 17698000 43360 13821 28779 29505 51049 51049 0.039907109774162564 NVELLPAA 8 Unmodified _NVELLPAA_ 0 0 0 ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.4691772460938 1 826.466895 825.459619 -0.20947 -0.00017312 -0.78886 -0.00065196 -0.99832 -0.00082508 826.4662241217495 70.495 0.55164 70.018 69.798 70.35 -0.47735 115 42 3 0 0 0 0.42423 1 38468 38468 42.095 7.9921 1 56483000 43361 13821 28779 29505 51050 51050 0.039907109774162564 NVELLPAA 8 Unmodified _NVELLPAA_ 0 0 0 ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7372741699219 2 413.737086 825.459619 0.24447 0.00010115 -1.0494 -0.00043419 -0.80496 -0.00033304 413.7367759529679 70.493 0.465 70.015 69.821 70.286 -0.47736 85 38 3 0 0 0 0.50673 1 38605 38605 34.102 1.9855 1 21341000 43362 13821 28779 29505 51051 51051 0.039907109774162564 NVELLPAA 8 Unmodified _NVELLPAA_ 0 0 0 ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF ENST00000468928.5_1_7:157161553-157163538:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7373657226562 2 413.737086 825.459619 0.59511 0.00024622 -0.56431 -0.00023348 0.030801 1.2743E-05 413.7370055099218 78.331 1.0083 72.155 71.754 72.762 -6.1757 105 60 2 0 0 0 0.42423 3 51091 51091;51222;51619 42.095 5.137 1 76423000 43363 13821 28779 29505 51052;51053;51054 51052 0.039907109774162564 NVESLHADL 9 Unmodified _NVESLHADL_ 0 0 0 REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF REV__ENST00000536995.5_1_11:72535848-72537775:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7513427734375 2 499.251089 996.487624 -0.3037 -0.00015162 -0.39889 -0.00019915 -0.70259 -0.00035077 499.2510490951377 34.818 0.54995 34.818 34.56 35.11 0 58 28 3 0 0 0 0.30562 1 18464 18464 16.942 3.4344 1 13250000 + 43364 22277 28780 29506 51055 51055 -0.01076010833151031 NVEWYGHPDRP 11 Unmodified _NVEWYGHPDRP_ 0 0 0 REV__ENSG00000182272|ENST00000329962|B4GALNT4 REV__ENSG00000182272|ENST00000329962|B4GALNT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2140502929688 3 457.214309 1368.6211 0.15659 7.1595E-05 -1.1102 -0.00050758 -0.95358 -0.00043599 457.21374506661556 54.106 0.35882 53.639 53.407 53.765 -0.46664 44 17 4 0 0 0 0.66968 1 29289 29289 5.8681 0 1 7211200 + 43365 23259 28781 29507 51056 51056 -0.04846771727443411 NVFGPPSE 8 Unmodified _NVFGPPSE_ 0 0 0 REV__ENST00000335793.3_1_17:71280809-71281388:-|nuORF REV__ENST00000335793.3_1_17:71280809-71281388:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.4005126953125 1 846.399209 845.391933 0.78829 0.00066721 0.15434 0.00013063 0.94263 0.00079784 846.3991490674932 83.096 0.40149 76.92 76.768 77.17 -6.1757 35 21 2 0 0 0 0.48669 1 54576 54576 36.044 1.9418 1 11230000 + 43366 25641 28782 29508 51057 51057 -0.036947389533793284 NVFGVCHIF 9 Carbamidomethyl (C) _NVFGVC(Carbamidomethyl (C))HIF_ NVFGVC(1)HIF NVFGVC(57)HIF 0 1 0 ENST00000519690.1_1_5:149827146-149827347:-|nuORF;ENSG00000164587|ENST00000407193|RPS14;ENST00000455621.1_1_1:178380756-178381056:+|nuORF ENST00000519690.1_1_5:149827146-149827347:-|nuORF ENST00000519690.1_1_5:149827146-149827347:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7688598632812 2 546.768394 1091.52224 1.1044 0.00060387 -0.33763 -0.0001846 0.76681 0.00041927 546.7683079914568 86.736 1.5696 80.56 79.794 81.364 -6.1757 260 85 4 0 0 0 0.027803 5 57244 56874;56994;57119;57244;57483 56.541 41.96 1 403400000 43367 7208 28783 29509 51058;51059;51060;51061;51062 51061 705 -0.01986466226048833 NVFIWMHN 8 Unmodified _NVFIWMHN_ 0 0 0 REV__ENSG00000131747|ENST00000423485|TOP2A REV__ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7555541992188 2 530.755287 1059.49602 0.1627 8.6356E-05 0.61245 0.00032506 0.77515 0.00041142 530.7558863338272 79.78 0.40021 79.835 79.647 80.047 0.05497 44 15 4 0 0 0 0.67686 1 44135 44135 12.532 0 1 19858000 + 43368 19809 28784 29510 51063 51063 -0.03134735397497934 NVFKKYEV 8 Unmodified _NVFKKYEV_ 0 0 0 ENSG00000143318|ENST00000368078|CASQ1 ENSG00000143318|ENST00000368078|CASQ1 ENSG00000143318|ENST00000368078|CASQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.78076171875 2 513.784567 1025.55458 0.29913 0.00015369 -4.0522 -0.002082 -3.7531 -0.0019283 513.7822392927172 67.129 0.16682 66.647 66.57 66.737 -0.48218 9 7 2 0 0 0 0.72664 1 36690 36690 14.838 3.198 1 1240500 43369 5489 28785 29511 51064 51064 0.04282644448608153 NVFQLEQAF 9 Unmodified _NVFQLEQAF_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MSMS AL20221201_MKP_PDAC_01 4 548.2757568359375 2 548.277106 1094.53966 NaN NaN NaN NaN NaN NaN NaN 56.113 1 50.136 49.636 50.636 -5.9769 0 0 0 0.12337 1 35777 35777 39.957 9.3208 1 43370 2604 28786 29512 51065 51065 -0.0038284741938241496 NVGEDCPVF 9 Carbamidomethyl (C) _NVGEDC(Carbamidomethyl (C))PVF_ NVGEDC(1)PVF NVGEDC(46)PVF 0 1 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7241821289062 2 518.723849 1035.43315 0.79543 0.00041261 -0.46416 -0.00024077 0.33128 0.00017184 518.7237934596462 56.562 0.32935 50.585 50.357 50.687 -5.9769 29 18 2 0 0 0 0.047196 1 36057 36057 46.021 27.886 1 23665000 43371 9847;3221 28787 29513 51066 51066 331 -0.08315345976211574 NVGKTCLTY 9 Carbamidomethyl (C) _NVGKTC(Carbamidomethyl (C))LTY_ NVGKTC(1)LTY NVGKTC(65)LTY 0 1 0 ENSG00000172007|ENST00000305626|RAB33B ENSG00000172007|ENST00000305626|RAB33B ENSG00000172007|ENST00000305626|RAB33B MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2635498046875 2 528.263142 1054.51173 0.84993 0.00044899 0.9335 0.00049313 1.7834 0.00094212 528.2630955357668 34.589 0.28348 30.494 30.384 30.668 -4.0951 35 16 3 0 0 0 0.018061 1 19943 19943 65.474 29.347 1 12824000 43372 8172 28788 29514 51067 51067 786 -0.013344936711291666 NVGQTALYV 9 Unmodified _NVGQTALYV_ 0 0 0 REV__ENSG00000197223|ENST00000410067|C1D REV__ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7586364746094 2 482.758549 963.502546 0.2266 0.00010939 0.31944 0.00015421 0.54604 0.00026361 482.7586410265834 37.775 0.34262 37.775 37.604 37.947 0 46 16 4 0 0 0 0.15471 1 20086 20086 27.629 2.2295 1 21983000 + 43373 23908 28789 29515 51068 51068 0.01933481034848228 NVHDIMVSF 9 Oxidation (M) _NVHDIM(Oxidation (M))VSF_ NVHDIM(1)VSF NVHDIM(54)VSF 0 0 1 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;ENST00000475558.5_1_3:72859059-72866479:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.25537109375 2 539.255317 1076.49608 0.24837 0.00013393 -0.032911 -1.7748E-05 0.21546 0.00011619 539.2554793235291 52.01 0.37001 51.576 51.4 51.77 -0.43367 70 18 5 0 0 0 0.032796 1 28137 28137 53.833 38.584 1 98221000 43374 5638 28790 29516 51069 51069 1030 -0.039107801881982596 NVHDIMVSF 9 Oxidation (M) _NVHDIM(Oxidation (M))VSF_ NVHDIM(1)VSF NVHDIM(46)VSF 0 0 1 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;ENST00000475558.5_1_3:72859059-72866479:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2545166015625 2 539.255317 1076.49608 0.77668 0.00041883 -1.5778 -0.00085082 -0.80109 -0.00043199 539.2548800460033 57.688 0.63301 51.66 51.237 51.87 -6.0275 84 34 4 0 0 0 0.047788 1 36889 36889 45.7 22.551 1 230060000 43375 5638 28790 29516 51070 51070 1030 -0.039107801881982596 NVHDIMVSF 9 Unmodified _NVHDIMVSF_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF;ENST00000475558.5_1_3:72859059-72866479:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.25830078125 2 531.257859 1060.50117 0.66534 0.00035347 0.088243 4.688E-05 0.75358 0.00040035 531.2578620130164 68.196 0.68529 62.02 61.769 62.455 -6.1757 75 40 2 0 0 0 0.07087 2 44507 44507;44637 39.95 25.111 1 167530000 43376 5638 28790 29517 51071;51072 51071 -0.026664763255666912 NVHDVETQF 9 Unmodified _NVHDVETQF_ 0 0 0 nc|ENSG00000185499|P15941-2|MUC1;nc|ENSG00000185499|P15941-17|MUC1;nc|ENSG00000185499|P15941|MUC1;nc|ENSG00000185499|P15941-3|MUC1;nc|ENSG00000185499|P15941-4|MUC1;ENSG00000185499|ENST00000620103|MUC1;nc|ENSG00000185499|P15941-8|MUC1;nc|ENSG00000185499|P15941-11|MUC1;nc|ENSG00000185499|P15941-7|MUC1;ENST00000468978.2_1_1:155159604-155160306:-|nuORF;nc|ENSG00000185499|P15941-6|MUC1;nc|ENSG00000185499|P15941-15|MUC1;nc|ENSG00000185499|P15941-13|MUC1 nc|ENSG00000185499|P15941-2|MUC1 nc|ENSG00000185499|P15941-2|MUC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8398132324219 3 363.505089 1087.49344 1.3481 0.00049003 1.8711 0.00068017 3.2192 0.0011702 363.506353361284 43.207 0.45182 38.442 38.272 38.724 -4.7648 59 31 3 0 0 0 0.36964 1 26332 26332 9.544 0 1 17335000 43377 9377 28791 29518 51073 51073 -0.04680912321487085 NVHNLAIVF 9 Unmodified _NVHNLAIVF_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;ENST00000546293.1_1_11:72406726-72408040:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.790283203125 2 513.790184 1025.56581 0.2236 0.00011488 0.54821 0.00028166 0.77181 0.00039655 513.7903821068811 66.904 0.41901 66.421 66.171 66.59 -0.48324 50 19 4 0 0 0 0.022193 2 36623 36517;36623 61.357 35.016 1 6844700 43378 9489 28792 29519 51074;51075 51075 0.05405466542742943 NVHNLAIVF 9 Unmodified _NVHNLAIVF_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;ENST00000546293.1_1_11:72406726-72408040:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7905883789062 2 513.790184 1025.56581 1.2085 0.00062092 -0.54589 -0.00028047 0.66262 0.00034045 513.7898912062988 66.487 0.40243 66.497 66.222 66.624 0.0095596 46 19 3 0 0 0 0.06187 1 36431 36431 42.095 21.223 1 19379000 43379 9489 28792 29519 51076 51076 0.05405466542742943 NVIEVDSAHY 10 Unmodified _NVIEVDSAHY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8116455078125 2 573.774928 1145.5353 0.48958 0.00028091 0.12437 7.1362E-05 0.61395 0.00035227 573.7750798003772 39.311 0.18567 39.311 39.177 39.362 0 15 8 2 0 0 0 0.22489 1 21072 21072 18.146 11.941 1 3554900 43380 7082 28793 29520 51077 51077 -0.031643566329421446 NVIGICTHY 9 Carbamidomethyl (C) _NVIGIC(Carbamidomethyl (C))THY_ NVIGIC(1)THY NVIGIC(68)THY 0 1 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7628173828125 2 538.763309 1075.51206 0.89676 0.00048314 -0.84806 -0.0004569 0.0487 2.6238E-05 538.7628617503381 51.067 0.34138 45.418 45.17 45.511 -5.649 37 20 2 0 0 0 0.015445 1 32069 32069 68.081 28.123 1 63992000 43381 8404 28794 29521 51078 51078 813 -0.02267073951270504 NVIGKKHKIL 10 Unmodified _NVIGKKHKIL_ 0 0 0 REV__ENST00000578319.5_1_17:7127738-7128413:+|nuORF REV__ENST00000578319.5_1_17:7127738-7128413:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.3787841796875 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 105.56 1 99.383 98.883 99.883 -6.1757 0 0 0 1.0024 1 70723 70723 0.40072 0 1 + 43382 17523 28795 29522 51079 51079 0.17094252319043335 NVIHNLATY 9 Unmodified _NVIHNLATY_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7774047851562 2 522.777274 1043.53999 0.24241 0.00012673 0.045063 2.3558E-05 0.28747 0.00015028 522.7770728181281 42.038 0.27948 42.038 41.864 42.143 0 38 14 3 0 0 0 0.0088174 2 22676 22676;22795 103.75 55.402 1 64407000 43383 3701 28796 29523 51080;51081 51080 0.019965723004816027 NVIHNLATY 9 Unmodified _NVIHNLATY_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7775268554688 2 522.777274 1043.53999 -0.12153 -6.3535E-05 -0.011733 -6.1337E-06 -0.13327 -6.9668E-05 522.7770760293878 42.332 0.28493 42.025 41.859 42.143 -0.30682 30 13 3 0 0 0 0.008678 1 22433 22433 88.904 48.946 1 71487000 43384 3701 28796 29523 51082 51082 0.019965723004816027 NVIHNLATY 9 Unmodified _NVIHNLATY_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7779541015625 2 522.777274 1043.53999 1.4894 0.00077865 0.17878 9.3462E-05 1.6682 0.00087211 522.7772536979077 47.48 0.82049 42.246 41.92 42.74 -5.2339 133 50 4 0 0 0 0.042911 1 29527 29527 48.346 25.197 1 274370000 43385 3701 28796 29523 51083 51083 0.019965723004816027 NVIHNLATY 9 Unmodified _NVIHNLATY_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.777274 1043.53999 -0.096302 -5.0345E-05 0.1193 6.2365E-05 0.022994 1.2021E-05 522.7777726459832 42.075 0.18592 42.066 41.915 42.101 -0.0088196 -0.027515 3.6223E-05 NaN 88.904 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4502700 43386 3701 28796 29523 0.019965723004816027 NVILAEPP 8 Unmodified _NVILAEPP_ 0 0 0 nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1 nc|ENSG00000124006|O75147-4|OBSL1 nc|ENSG00000124006|O75147-4|OBSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.4830322265625 1 852.482545 851.475269 -0.4067 -0.00034671 1.2236 0.0010431 0.81688 0.00069638 852.4835968542723 70.289 0.19604 69.81 69.673 69.869 -0.47903 12 8 2 0 0 0 0.61462 1 38440 38440 24.674 0 1 613520 43387 3743 28797 29524 51084 51084 0.0435899749447799 NVILAEPP 8 Unmodified _NVILAEPP_ 0 0 0 nc|ENSG00000124006|O75147-4|OBSL1;ENSG00000124006|ENST00000404537|OBSL1 nc|ENSG00000124006|O75147-4|OBSL1 nc|ENSG00000124006|O75147-4|OBSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.482177734375 1 852.482545 851.475269 -1.1797 -0.0010056 0.79675 0.00067922 -0.38292 -0.00032643 852.4831722286257 77.487 0.48504 77.005 76.784 77.269 -0.4826 58 22 3 0 0 0 0.55032 1 42340 42340 30.225 0 1 28113000 43388 3743 28797 29524 51085 51085 0.0435899749447799 NVIRDAVTY 9 Unmodified _NVIRDAVTY_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.782470703125 2 525.782556 1049.55056 -0.10266 -5.3977E-05 0.15546 8.1736E-05 0.052795 2.7759E-05 525.7826022573737 37.84 0.36062 37.569 37.4 37.761 -0.27133 70 17 5 0 0 0 0.013609 1 19892 19892 70.332 34.205 1 314370000 43389 6581 28798 29525 51086 51086 0.027765549549030766 NVIRDAVTY 9 Unmodified _NVIRDAVTY_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7831420898438 2 525.782556 1049.55056 -0.14801 -7.7823E-05 1.8307 0.00096255 1.6827 0.00088473 525.7835272555609 37.464 0.28801 37.485 37.35 37.639 0.021545 43 13 4 0 0 0 0.0089732 1 19914 19914 86.332 50.205 1 40117000 43390 6581 28798 29525 51087 51087 0.027765549549030766 NVIRPILKAH 10 Unmodified _NVIRPILKAH_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MSMS AL20221201_MKP_PDAC_01 4 580.8659057617188 2 580.866757 1159.71896 NaN NaN NaN NaN NaN NaN NaN 107.99 1 101.82 101.32 102.32 -6.1757 0 0 0 1.0024 1 72194 72194 0.40072 0 1 43391 6836 28799 29526 51088 51088 0.14549081659242802 NVIYDLLEF 9 Unmodified _NVIYDLLEF_ 0 0 0 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 REV__nc|ENSG00000169032|Q02750-2|MAP2K1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.319580078125 2 563.294965 1124.57538 0.48882 0.00027535 -2.8638 -0.0016131 -2.3749 -0.0013378 563.2934378017206 63.549 0.30689 63.063 62.864 63.171 -0.48617 17 13 2 0 0 0 0.19205 1 34679 34679 14.838 1.7958 1 649880 + 43392 19568 28800 29527 51089 51089 0.0180719003762988 NVKGLGPA 8 Unmodified _NVKGLGPA_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2250061035156 2 378.224146 754.433738 2.0591 0.00077881 0.11521 4.3574E-05 2.1743 0.00082238 378.2242275614994 103.34 0.083969 97.166 97.126 97.21 -6.1757 49 22 3 0 0 0 0.80676 1 69294 69294 2.5775 0.27475 1 7644500 + 43393 19005 28801 29528 51090 51090 0.046698615258037535 NVKRHQAY 8 Unmodified _NVKRHQAY_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.277099609375 2 508.275232 1014.53591 NaN NaN NaN NaN NaN NaN NaN 92.942 1 92.485 91.985 92.985 -0.4574 0 0 0 0.97348 1 50796 50796 5.7604 0.52976 1 43394 4913 28802 29529 51091 51091 0.029225275974113174 NVKVDPEIQ 9 Unmodified _NVKVDPEIQ_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2819213867188 2 521.282389 1040.55022 -0.11004 -5.7361E-05 -0.40485 -0.00021104 -0.51489 -0.0002684 521.2820227642858 30.814 0.26215 30.814 30.67 30.932 0 28 12 3 0 0 0 0.018061 1 15987 15987 65.474 28.967 1 7218600 + 43395 177 28803 29530 51092 51092 0.031571352350511006 NVKVDPEIQ 9 Unmodified _NVKVDPEIQ_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2821655273438 2 521.282389 1040.55022 0.34583 0.00018027 0.22318 0.00011634 0.56901 0.00029662 521.2823543077455 30.798 0.2681 30.695 30.571 30.839 -0.10269 20 10 3 0 0 0 0.018061 1 15988 15988 65.474 21.701 1 3714300 + 43396 177 28803 29530 51093 51093 0.031571352350511006 NVKVDPEIQ 9 Unmodified _NVKVDPEIQ_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.282389 1040.55022 -0.17727 -9.2407E-05 0.35753 0.00018637 0.18026 9.3966E-05 521.2826356591445 30.623 0.17048 30.653 30.519 30.69 0.030106 -0.067762 0.00054061 NaN 65.474 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 916980 + 43397 177 28803 29530 0.031571352350511006 NVLASSPSM 9 Unmodified _NVLASSPSM_ 0 0 0 REV__PKD1L1|p.T597M|1|0.04|ENSG00000158683|chr7:47904519-47904519|G/A|missense_variant REV__PKD1L1|p.T597M|1|0.04|ENSG00000158683|chr7:47904519-47904519|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 453.2217712402344 2 453.223485 904.432418 NaN NaN NaN NaN NaN NaN NaN 22.898 1 20.12 19.62 20.62 -2.7784 0 0 0 0.7818 1 12351 12351 6.7232 0.96273 1 + 43398 30072 28804 29531 51094 51094 -0.02362140625257325 NVLDDVYEY 9 Unmodified _NVLDDVYEY_ 0 0 0 ENSG00000136237|ENST00000665637|RAPGEF5;nc|ENSG00000136237|Q92565|RAPGEF5;nc|ENSG00000136237|Q92565-2|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 ENSG00000136237|ENST00000665637|RAPGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2557373046875 2 565.256037 1128.49752 0.29652 0.00016761 -0.47801 -0.0002702 -0.1815 -0.00010259 565.2556366797911 63.809 0.52337 63.809 63.499 64.022 0 67 21 4 0 0 0 0.21589 2 35558 35558;35667 29.082 14.5 1 12373000 43399 4801 28805 29532 51095;51096 51095 -0.06158867618410113 NVLDGSPEIH 10 Unmodified _NVLDGSPEIH_ 0 0 0 REV__ENSG00000186714|ENST00000335185|CCDC73 REV__ENSG00000186714|ENST00000335185|CCDC73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.77001953125 2 540.769645 1079.52474 -0.42808 -0.00023149 0.63544 0.00034363 0.20736 0.00011213 540.7699402150479 34.26 0.43023 34.068 33.77 34.2 -0.19132 33 16 3 0 0 0 0.46514 1 17846 17846 18.146 1.0335 1 6528100 + 43400 23591 28806 29533 51097 51097 -0.011843392873743142 NVLDVLAV 8 Unmodified _NVLDVLAV_ 0 0 0 ENSG00000066248|ENST00000264051|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;nc|ENSG00000066248|Q8N5V2-2|NGEF ENSG00000066248|ENST00000264051|NGEF ENSG00000066248|ENST00000264051|NGEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.4987182617188 1 842.498195 841.490919 -0.044893 -3.7823E-05 1.1543 0.00097248 1.1094 0.00093466 842.4988908247008 62.652 0.093182 62.652 62.611 62.704 0 5 3 2 0 0 0 0.80447 1 34962 34962 3.9444 0 1 287380 43401 931 28807 29534 51098 51098 0.06383284011531032 NVLEEALQR 9 Unmodified _NVLEEALQR_ 0 0 0 REV__ENSG00000275793|ENST00000619918|RIMBP3 REV__ENSG00000275793|ENST00000619918|RIMBP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2958984375 2 536.293288 1070.57202 NaN NaN NaN NaN NaN NaN NaN 38.841 1 38.841 38.341 39.341 0 0 0 0 0.16996 1 20772 20772 34.402 6.7729 1 + 43402 23330 28808 29535 51099 51099 0.039559399836207376 NVLELEWL 8 Unmodified _NVLELEWL_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2243957519531 2 508.276575 1014.5386 NaN NaN NaN NaN NaN NaN NaN 92.272 1 92.272 91.772 92.772 0 0 0 0 0.97444 1 51022 51022 5.2307 0.47466 1 + 43403 17367 28809 29536 51100 51100 0.03190938211707817 NVLFWCSEF 9 Unmodified _NVLFWCSEF_ 0 0 0 ENST00000366595.7_1_1:236140589-236140733:-|nuORF ENST00000366595.7_1_1:236140589-236140733:-|nuORF ENST00000366595.7_1_1:236140589-236140733:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.1772155761719 3 382.175915 1143.50592 NaN NaN NaN NaN NaN NaN NaN 19.026 1 19.033 18.533 19.533 0.0072136 0 0 0 0.84564 1 9665 9665 1.0715 0 1 43404 12203 28810 29537 51101 51101 -0.060095921827951315 NVLKLLGK 8 Unmodified _NVLKLLGK_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.8006286621094 2 442.80002 883.585488 1.711 0.00075762 0.048411 2.1437E-05 1.7594 0.00077905 442.7999074754809 105.29 0.19122 99.11 99.015 99.206 -6.1757 137 48 4 0 0 0 0.80992 1 70586 70586 0.69038 0 1 806250000 43405 2865 28811 29538 51102 51102 0.1390384255353183 NVLKRLQLPAR 11 Unmodified _NVLKRLQLPAR_ 0 0 0 REV__TRIM37|p.E62K|1|0.09|ENSG00000108395|chr17:59088388-59088388|C/T|missense_variant REV__TRIM37|p.E62K|1|0.09|ENSG00000108395|chr17:59088388-59088388|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.4185791015625 2 654.417146 1306.81974 1.458 0.00095416 0.7395 0.00048394 2.1975 0.0014381 654.4174642868063 104.25 0.12726 98.079 98.014 98.141 -6.1757 17 7 3 0 0 0 0.74203 1 69836 69836 0.30703 0 1 40289000 + 43406 30126 28812 29539 51103 51103 0.17860113642086617 NVLKRLQLPAR 11 Unmodified _NVLKRLQLPAR_ 0 0 0 REV__TRIM37|p.E62K|1|0.09|ENSG00000108395|chr17:59088388-59088388|C/T|missense_variant REV__TRIM37|p.E62K|1|0.09|ENSG00000108395|chr17:59088388-59088388|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.419189453125 2 654.417146 1306.81974 1.457 0.00095347 0.098268 6.4308E-05 1.5552 0.0010178 654.4169942815361 105.04 0.25854 98.868 98.705 98.964 -6.1757 103 28 6 0 0 0 0.74203 1 70267 70267 0.30703 0 1 4841800000 + 43407 30126 28812 29539 51104 51104 0.17860113642086617 NVLLQQLRVIR 11 Unmodified _NVLLQQLRVIR_ 0 0 0 REV__ENST00000392396.7_2_3:195796375-195798346:-|nuORF REV__ENST00000392396.7_2_3:195796375-195798346:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.4312133789062 2 676.430253 1350.84595 1.585 0.0010721 0.52319 0.0003539 2.1081 0.001426 676.9323963725573 104.25 0.12061 98.079 98.001 98.122 -6.1757 15 6 3 0 0 0 0.74203 1 69835 69835 0.30703 0.03801 1 48093000 + 43408 26394 28813 29540 51105 51105 0.18456382813565142 NVLLQQLRVIR 11 Unmodified _NVLLQQLRVIR_ 0 0 0 REV__ENST00000392396.7_2_3:195796375-195798346:-|nuORF REV__ENST00000392396.7_2_3:195796375-195798346:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2902526855469 3 451.289261 1350.84595 1.7075 0.00077059 0.63705 0.00028749 2.3446 0.0010581 451.28943019760885 105.02 0.16206 98.842 98.749 98.911 -6.1757 46 14 4 0 0 0 0.74203 1 70281 70281 0.08335 0.010087 1 364610000 + 43409 26394 28813 29540 51106 51106 0.18456382813565142 NVLRLKLSL 9 Unmodified _NVLRLKLSL_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5703735351562 3 352.569365 1054.68626 2.0951 0.00073868 -0.97564 -0.00034398 1.1195 0.0003947 352.56914268445087 79.302 0.35211 73.126 72.967 73.32 -6.1757 22 19 2 0 0 0 0.171 1 51971 51971 26.021 1.0636 1 6503900 + 43410 22486 28814 29541 51107 51107 0.1611087453638902 NVLRRTLK 8 Unmodified _NVLRRTLK_ 0 0 0 REV__ENSG00000166164|ENST00000394688|BRD7 REV__ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3267822265625 2 500.324725 998.634898 1.7012 0.00085114 1.5433 0.00077213 3.2444 0.0016233 500.325109543646 105.2 0.29994 99.021 98.856 99.156 -6.1757 249 61 6 0 0 0 0.80992 1 70359 70359 0.69038 0 1 16160000000 + 43411 22089 28815 29542 51108 51108 0.13552550562337728 NVMFPHLTH 9 Unmodified _NVMFPHLTH_ 0 0 0 REV__ENSG00000183454|ENST00000330684|GRIN2A REV__ENSG00000183454|ENST00000330684|GRIN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2749633789062 2 548.273844 1094.53313 0.64547 0.0003539 2.1574 0.0011829 2.8029 0.0015368 548.2752515900352 49.405 0.23372 49.405 49.277 49.51 0 19 10 2 0 0 0 0.41742 1 27164 27164 11.64 1.5664 1 8095000 + 43412 23348 28816 29543 51109 51109 -0.010350638517593325 NVMFPHLTH 9 Unmodified _NVMFPHLTH_ 0 0 0 REV__ENSG00000183454|ENST00000330684|GRIN2A REV__ENSG00000183454|ENST00000330684|GRIN2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2757568359375 2 548.273844 1094.53313 0.72919 0.0003998 2.2013 0.0012069 2.9305 0.0016067 548.2750745604375 49.796 0.25476 49.404 49.296 49.55 -0.3923 21 12 2 0 0 0 0.41742 1 26770 26770 11.64 0.14559 1 8823100 + 43413 23348 28816 29543 51110 51110 -0.010350638517593325 NVMFPHLTH 9 Unmodified _NVMFPHLTH_ 0 0 0 REV__ENSG00000183454|ENST00000330684|GRIN2A REV__ENSG00000183454|ENST00000330684|GRIN2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.273844 1094.53313 0.64547 0.0003539 2.1574 0.0011829 2.8029 0.0015368 548.2752515900352 49.405 0.23372 49.405 49.277 49.51 0 0.00030345 -2.0557E-05 NaN 11.64 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8095000 + 43414 23348 28816 29543 -0.010350638517593325 NVNAYITKLPF 11 Unmodified _NVNAYITKLPF_ 0 0 0 REV__ENST00000416321.5_1_12:100646057-100649830:-|nuORF REV__ENST00000416321.5_1_12:100646057-100649830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.240478515625 3 427.239684 1278.69722 0.24674 0.00010542 1.6483 0.00070423 1.8951 0.00080965 427.24053078188655 24.258 0.12685 24.279 24.216 24.343 0.021185 6 4 2 0 0 0 0.69509 1 12539 12539 4.7159 0.30977 1 2535500 + 43415 26770 28817 29544 51111 51111 0.06902232119955443 NVNFLLWF 8 Unmodified _NVNFLLWF_ 0 0 0 ENST00000394331.3_1_12:54410482-54410689:+|nuORF ENST00000394331.3_1_12:54410482-54410689:+|nuORF ENST00000394331.3_1_12:54410482-54410689:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.5240783691406 3 351.523644 1051.5491 NaN NaN NaN NaN NaN NaN NaN 8.7768 1 6.2949 5.7949 6.7949 -2.482 0 0 0 0.97444 1 4430 4430 0.45834 0 1 43416 12735 28818 29545 51112 51112 0.02538965656799519 NVNIIYGLT 9 Unmodified _NVNIIYGLT_ 0 0 0 nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P nc|ENSG00000176748|P0C646|OR52Z1P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2584838867188 2 503.782025 1005.5495 0.029581 1.4902E-05 1.1166 0.0005625 1.1461 0.0005774 503.78279722948105 86.885 0.29948 86.382 86.242 86.541 -0.50318 21 11 3 0 0 0 0.209 1 47529 47529 7.2892 0 1 505230 43417 16401 28819 29546 51113 51113 0.04694340586001999 NVNKEQVYS 9 Unmodified _NVNKEQVYS_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7692260742188 2 540.769645 1079.52474 -0.47616 -0.00025749 0.26095 0.00014111 -0.21521 -0.00011638 540.769840059692 34.07 0.31092 34.07 33.864 34.175 0 34 15 3 0 0 0 0.19127 1 17867 17867 24.021 2.4836 1 26984000 43418 8362 28820 29547 51114 51114 -0.011843392873743142 NVNKEQVYS 9 Unmodified _NVNKEQVYS_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.769645 1079.52474 0.13523 7.3128E-05 -0.34534 -0.00018675 -0.21011 -0.00011362 540.7695434962613 33.961 0.10722 33.99 33.907 34.014 0.028934 -0.052633 -0.00066785 NaN 24.021 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 539970 43419 8362 28820 29547 -0.011843392873743142 NVNNHITQY 9 Unmodified _NVNNHITQY_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.76611328125 2 551.767437 1101.52032 NaN NaN NaN NaN NaN NaN NaN 24.273 1 24.273 23.773 24.773 0 0 0 0 0.6557 1 12398 12398 10.824 5.5933 1 43420 3590 28821 29548 51115 51115 -0.026378037102631424 NVPPCKVR 8 Unmodified _NVPPCKVR_ 0 0 0 ENST00000563229.5_1_15:74281313-74286901:-|nuORF ENST00000563229.5_1_15:74281313-74286901:-|nuORF ENST00000563229.5_1_15:74281313-74286901:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7597351074219 2 456.75783 911.501106 NaN NaN NaN NaN NaN NaN NaN 21.957 1 21.957 21.457 22.457 0 0 0 0 0.97444 1 11150 11150 4.756 0.81161 1 43421 15356 28822 29549 51116 51116 0.04181568465105556 NVPRGSYRK 9 Unmodified _NVPRGSYRK_ 0 0 0 REV__ENSG00000108465|ENST00000338399|CDK5RAP3 REV__ENSG00000108465|ENST00000338399|CDK5RAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8005981445312 2 538.801614 1075.58868 NaN NaN NaN NaN NaN NaN NaN 31.857 1 31.728 31.228 32.228 -0.12915 0 0 0 0.82739 1 16574 16574 4.3292 1.7518 1 + 43422 18607 28823 29550 51117 51117 0.05390485660223021 NVPWHSATGI 10 Unmodified _NVPWHSATGI_ 0 0 0 REV__ENST00000530254.6_1_17:27448921-27449252:-|nuORF REV__ENST00000530254.6_1_17:27448921-27449252:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1854858398438 3 361.185691 1080.53524 1.179 0.00042584 -1.8398 -0.0006645 -0.66078 -0.00023866 361.18566493535235 27.096 0.3646 24.06 23.816 24.18 -3.0365 28 18 3 0 0 0 0.64628 1 15020 15020 7.9454 2.6485 1 7172500 + 43423 28437 28824 29551 51118 51118 -0.001803118423140404 NVQQIYSF 8 Unmodified _NVQQIYSF_ 0 0 0 ENSG00000176302|ENST00000317011|FOXR1 ENSG00000176302|ENST00000317011|FOXR1 ENSG00000176302|ENST00000317011|FOXR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7518310546875 2 499.750724 997.486896 NaN NaN NaN NaN NaN NaN NaN 43.694 1 43.694 43.194 44.194 0 0 0 0 0.47897 1 23750 23750 42.095 0.25493 1 43424 8584 28825 29552 51119 51119 -0.011948054821914411 NVRCESEVF 9 Carbamidomethyl (C) _NVRC(Carbamidomethyl (C))ESEVF_ NVRC(1)ESEVF NVRC(66)ESEVF 0 1 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2606811523438 2 570.26113 1138.50771 -0.77685 -0.00044301 -0.5345 -0.00030481 -1.3114 -0.00074782 570.2609702710398 32.707 0.38905 32.707 32.599 32.988 0 35 19 3 0 0 0 0.017075 1 17087 17087 66.457 39.573 1 19662000 43425 1289 28826 29553 51120 51120 115 -0.056005831648462845 NVRCESEVF 9 Carbamidomethyl (C) _NVRC(Carbamidomethyl (C))ESEVF_ NVRC(1)ESEVF NVRC(79)ESEVF 0 1 0 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2621459960938 2 570.26113 1138.50771 0.93552 0.00053349 0.39708 0.00022644 1.3326 0.00075993 570.2609404702087 36.748 0.43378 32.464 32.267 32.701 -4.2835 63 26 3 0 0 0 0.010611 2 21410 21410;21524 78.728 30.838 1 37131000 43426 1289 28826 29553 51121;51122 51121 115 -0.056005831648462845 NVRPPNTAL 9 Unmodified _NVRPPNTAL_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.27685546875 2 491.277441 980.540328 0.23798 0.00011691 0.57424 0.00028211 0.81222 0.00039902 491.2778542351677 31.377 0.40688 31.377 31.174 31.58 0 28 19 2 0 0 0 0.047788 1 16400 16400 45.7 22.963 1 1700300 43427 8742 28827 29554 51123 51123 0.049279920203161964 NVRPPNTAL 9 Unmodified _NVRPPNTAL_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2778930664062 2 491.277441 980.540328 0.39435 0.00019374 -0.19236 -9.4501E-05 0.202 9.9236E-05 491.27718658358043 31.416 0.35411 31.313 31.08 31.434 -0.10269 21 13 2 0 0 0 0.036857 1 16357 16357 51.63 28.894 1 2416500 43428 8742 28827 29554 51124 51124 0.049279920203161964 NVRPPNTAL 9 Unmodified _NVRPPNTAL_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2778625488281 2 491.277441 980.540328 0.92 0.00045198 -0.51029 -0.00025069 0.40971 0.00020128 491.2772811277963 35.654 0.56685 31.461 31.188 31.755 -4.1928 111 35 4 0 0 0 0.010611 2 20797 20669;20797 78.728 44.626 1 26727000 43429 8742 28827 29554 51125;51126 51126 0.049279920203161964 NVRPVPLEL 9 Unmodified _NVRPVPLEL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.8118896484375 2 518.811116 1035.60768 0.21738 0.00011278 0.41281 0.00021417 0.63019 0.00032695 518.8114361191709 59.129 0.31882 58.638 58.453 58.771 -0.49079 37 14 4 0 0 0 0.013041 1 32156 32156 71.922 45.039 1 4609300 43430 5575 28828 29555 51127 51127 0.09130022231261137 NVRTATESF 9 Unmodified _NVRTATESF_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000562784.1_1_15:72501984-72509791:-|nuORF;ENST00000564276.1_1_15:72502555-72511438:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2583618164062 2 512.756538 1023.49852 -0.44049 -0.00022586 0.64281 0.00032961 0.20232 0.00010374 512.7563942265758 27.118 0.17733 27.118 27.055 27.232 0 13 8 2 0 0 0 0.05483 1 13965 13965 43.772 13.136 1 1271900 43431 954 28829 29556 51128 51128 -0.012286084588595259 NVSFLYGLF 9 Unmodified _NVSFLYGLF_ 0 0 0 REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2802734375 2 530.279118 1058.54368 0.5321 0.00028216 2.4766 0.0013133 3.0087 0.0015955 530.2798526924829 67.772 0.37965 67.29 67.096 67.475 -0.48219 45 16 4 0 0 0 0.1773 1 37030 37030 25.399 2.663 1 8879300 + 43432 26070 28830 29557 51129 51129 0.01675242074338712 NVSFLYGLF 9 Unmodified _NVSFLYGLF_ 0 0 0 REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.279052734375 2 530.279118 1058.54368 1.0878 0.00057681 -0.068405 -3.6274E-05 1.0193 0.00054054 530.278707760504 71.778 0.61665 65.602 65.281 65.898 -6.1757 64 33 2 0 0 0 0.10734 2 46992 46846;46992 32.305 3.2239 1 36384000 + 43433 26070 28830 29557 51130;51131 51131 0.01675242074338712 NVSFLYGLF 9 Unmodified _NVSFLYGLF_ 0 0 0 REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2791748046875 2 530.279118 1058.54368 0.98864 0.00052425 -0.21768 -0.00011543 0.77096 0.00040883 530.2774328085534 74.852 0.1497 68.677 68.587 68.737 -6.1757 10 7 2 0 0 0 0.21643 1 48946 48946 21.537 2.098 1 6360700 + 43434 26070 28830 29557 51132 51132 0.01675242074338712 NVSFLYGLF 9 Unmodified _NVSFLYGLF_ 0 0 0 REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF REV__ENST00000370950.7_1_1:70718526-70718700:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2776489257812 2 530.279118 1058.54368 0.79645 0.00042234 -0.47256 -0.00025059 0.32389 0.00017175 530.2783743120821 75.581 0.69941 69.405 69.102 69.801 -6.1757 65 37 2 0 0 0 0.15471 1 49451 49451 27.629 1.3607 1 14629000 + 43435 26070 28830 29557 51133 51133 0.01675242074338712 NVSGAHLNPAF 11 Unmodified _NVSGAHLNPAF_ 0 0 0 nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10 nc|ENSG00000143595|Q96PS8-2|AQP10 nc|ENSG00000143595|Q96PS8-2|AQP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7849731445312 2 563.78563 1125.55671 0.69767 0.00039334 -0.55906 -0.00031519 0.13861 7.8148E-05 563.7847522012441 60.8 0.21356 60.756 60.672 60.886 -0.04351 16 10 2 0 0 0 0.48615 1 33211 33211 17.113 4.5813 1 3441400 43436 5531 28831 29558 51134 51134 -0.0010492681360574352 NVSGAHLNPAF 11 Unmodified _NVSGAHLNPAF_ 0 0 0 nc|ENSG00000143595|Q96PS8-2|AQP10;ENSG00000143595|ENST00000324978|AQP10 nc|ENSG00000143595|Q96PS8-2|AQP10 nc|ENSG00000143595|Q96PS8-2|AQP10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.78563 1125.55671 -0.15548 -8.7659E-05 -1.018 -0.00057391 -1.1734 -0.00066157 563.7850500804213 61.174 0.36912 60.684 60.617 60.986 -0.48932 -0.035945 -8.6135E-05 NaN 17.113 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 5317700 43437 5531 28831 29558 -0.0010492681360574352 NVSGKKFFANE 11 Unmodified _NVSGKKFFANE_ 0 0 0 REV__ENST00000380693.7_1_X:11777712-11777841:+|nuORF REV__ENST00000380693.7_1_X:11777712-11777841:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2140502929688 3 414.215539 1239.62479 0.38504 0.00015949 0.27622 0.00011441 0.66125 0.0002739 414.21535413262734 15.729 0.22433 13.202 13.065 13.289 -2.5273 91 53 2 0 0 0 0.69509 1 8021 8021 4.7159 1.3963 1 3433900 + 43438 26315 28832 29559 51135 51135 0.014558980464244087 NVSITFLESSS 11 Unmodified _NVSITFLESSS_ 0 0 0 REV__ENST00000479091.1_1_2:239072957-239076527:+|nuORF REV__ENST00000479091.1_1_2:239072957-239076527:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.1997680664062 3 395.199554 1182.57683 -0.38103 -0.00015058 1.2704 0.00050207 0.8894 0.00035149 395.199738887872 55.716 0.21123 55.648 55.532 55.743 -0.068741 15 10 2 0 0 0 0.65846 1 30272 30272 4.1166 0.27072 1 4536700 + 43439 23062 28833 29560 51136 51136 -0.007152206642786041 NVSIYRISY 9 Unmodified _NVSIYRISY_ 0 0 0 ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1 ENST00000488127.1_1_1:25880414-25890333:+|nuORF ENST00000488127.1_1_1:25880414-25890333:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8662719726562 3 372.201229 1113.58186 -0.33134 -0.00012332 0.4687 0.00017445 0.13737 5.1128E-05 372.2014413915087 35.013 1.2544 34.791 34.099 35.353 -0.2224 92 56 2 0 0 0 0.55775 1 18387 18387 2.2828 0 1 34936000 43440 6554 28834 29561 51137 51137 0.029611279890104925 NVSNVNLTL 9 Unmodified _NVSNVNLTL_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2;ENST00000518287.6_1_8:71025838-71050550:-|nuORF ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.1976928710938 2 487.269281 972.52401 0.29735 0.00014489 0.73014 0.00035578 1.0275 0.00050067 487.2697818055377 58.427 0.24438 58.427 58.316 58.56 0 12 9 2 0 0 0 0.19496 1 32527 32527 13.906 3.0821 1 1098900 43441 5230 28835 29562 51138 51138 0.03664866063570571 NVSPAISIHE 10 Unmodified _NVSPAISIHE_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.77978515625 2 533.780013 1065.54547 -0.34146 -0.00018226 -0.74123 -0.00039566 -1.0827 -0.00057792 533.7798387777077 29.856 0.2513 29.856 29.722 29.974 0 31 14 3 0 0 0 0.48505 1 15460 15460 17.113 3.2068 1 13234000 43442 951 28836 29563 51139 51139 0.015322510922715082 NVSPAISIHE 10 Unmodified _NVSPAISIHE_ 0 0 0 nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7791748046875 2 533.780013 1065.54547 0.60542 0.00032316 -0.46238 -0.00024681 0.14304 7.6353E-05 533.7800355899278 29.882 0.15854 29.802 29.71 29.868 -0.080429 11 6 2 0 0 0 0.48505 1 15475 15475 17.113 3.2068 1 4263200 43443 951 28836 29563 51140 51140 0.015322510922715082 NVSRAKAVRAL 11 Unmodified _NVSRAKAVRAL_ 0 0 0 ENSG00000136274|ENST00000490531|NACAD;ENSG00000253506|ENST00000521764|NACA2;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA ENSG00000136274|ENST00000490531|NACAD;ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.912353515625 3 395.578923 1183.71494 -0.079394 -3.1407E-05 -0.3868 -0.00015301 -0.46619 -0.00018441 395.5790535534548 17.284 0.12281 17.29 17.225 17.348 0.0050564 21 9 3 0 0 0 0.60536 1 8708 8708 11.065 3.1199 1 1449700 43444 9834;4811 28837 29564 51141 51141 0.13042992165514988 NVSRAKAVRAL 11 Unmodified _NVSRAKAVRAL_ 0 0 0 ENSG00000136274|ENST00000490531|NACAD;ENSG00000253506|ENST00000521764|NACA2;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA ENSG00000136274|ENST00000490531|NACAD;ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9134826660156 3 395.578923 1183.71494 0.87541 0.0003463 -2.1999 -0.00087024 -1.3245 -0.00052394 395.5789879178461 18.373 0.36309 15.751 15.515 15.878 -2.6215 69 32 4 0 0 0 0.31264 2 9700 9645;9700 26.121 9.555 1 12439000 43445 9834;4811 28837 29564 51142;51143 51143 0.13042992165514988 NVTDIMLIL 9 Oxidation (M) _NVTDIM(Oxidation (M))LIL_ NVTDIM(1)LIL NVTDIM(63)LIL 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2901611328125 2 524.291368 1046.56818 0.26082 0.00013674 -1.3005 -0.00068185 -1.0397 -0.0005451 524.2903658741661 89.396 0.30843 89.444 89.289 89.597 0.047859 13 10 2 0 0 0 0.020973 1 49743 49743 62.573 20.478 1 8345100 43446 8296;16388 28838 29565 51144 51144 1404 0.04676134165561052 NVTDIMLIL 9 Unmodified _NVTDIMLIL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2949829101562 2 516.293911 1030.57327 0.82386 0.00042535 1.4648 0.00075625 2.2886 0.0011816 516.2945181295947 101.5 0.21177 95.32 95.231 95.443 -6.1757 25 10 4 0 0 0 0.0088174 1 68089 68089 103.75 42.391 1 84037000 43447 8296;16388 28838 29566 51145 51145 0.05920438028169883 NVTEKKIPF 9 Unmodified _NVTEKKIPF_ 0 0 0 THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|41|3|sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|41|3|sense THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|41|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3101806640625 2 538.310949 1074.60735 NaN NaN NaN NaN NaN NaN NaN 93.309 1 93.332 92.832 93.832 0.022987 0 0 0 0.81228 1 51880 51880 5.7319 0 1 43448 30187 28839 29567 51146 51146 0.0730260251141317 NVTGIVQVY 9 Unmodified _NVTGIVQVY_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7751770019531 2 496.7742 991.533846 0.40632 0.00020185 0.71989 0.00035762 1.1262 0.00055947 496.7748390875401 58.088 0.2888 58.088 57.944 58.233 0 19 11 2 0 0 0 0.013041 1 32312 32312 71.922 37.82 1 2545800 43449 7615 28840 29568 51147 51147 0.03774054068958321 NVTGIVQVY 9 Unmodified _NVTGIVQVY_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.542236328125 1 992.541123 991.533846 0.15485 0.00015369 -0.026704 -2.6505E-05 0.12815 0.00012719 992.5414860369364 58.06 0.18605 58.06 57.968 58.154 0 12 7 2 0 0 0 0.078314 1 32316 32316 38.176 18.919 1 735880 43450 7615 28840 29568 51148 51148 0.03774054068958321 NVTGIVQVY 9 Unmodified _NVTGIVQVY_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7744445800781 2 496.7742 991.533846 0.27491 0.00013657 3.9834 0.0019789 4.2583 0.0021154 496.7746033624935 58.622 0.28882 58.131 57.963 58.252 -0.49079 33 13 3 0 0 0 0.032796 2 31845 31845;31924 53.833 28.433 1 5298800 43451 7615 28840 29568 51149;51150 51149 0.03774054068958321 NVTGIVQVY 9 Unmodified _NVTGIVQVY_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5423583984375 1 992.541123 991.533846 0.16797 0.00016672 -0.16298 -0.00016176 0.0049912 4.954E-06 992.5408825730095 58.654 0.20713 58.163 58.005 58.212 -0.49079 15 9 2 0 0 0 0.0090524 1 31865 31865 85.642 41.783 1 2088700 43452 7615 28840 29568 51151 51151 0.03774054068958321 NVTGIVQVY 9 Unmodified _NVTGIVQVY_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5414428710938 1 992.541123 991.533846 0.74153 0.000736 0.65261 0.00064775 1.3941 0.0013837 992.5416281013239 66.147 0.32964 59.971 59.787 60.117 -6.1757 27 18 2 0 0 0 0.001066 1 42956 42956 139.14 42.854 1 11874000 43453 7615 28840 29568 51152 51152 0.03774054068958321 NVTHELTEVTF 11 Unmodified _NVTHELTEVTF_ 0 0 0 REV__nc|ENSG00000151136|A6QL63-2|ABTB3 REV__nc|ENSG00000151136|A6QL63-2|ABTB3 MSMS AL20221201_MKP_PDAC_01 4 645.3231811523438 2 645.322242 1288.62993 NaN NaN NaN NaN NaN NaN NaN 23.676 1 20.848 20.348 21.348 -2.8273 0 0 0 0.94002 1 12826 12826 2.4985 0.65425 1 + 43454 21051 28841 29569 51153 51153 -0.0028384288164033933 NVTLISFK 8 Unmodified _NVTLISFK_ 0 0 0 REV__CTRB1-PRSS1|1|fusion REV__CTRB1-PRSS1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2740478515625 2 461.273835 920.533118 0.37776 0.00017425 0.60027 0.00027689 0.97803 0.00045114 461.27373399941854 78.313 0.97022 72.137 71.773 72.743 -6.1757 125 58 3 0 0 0 0.70294 1 51468 51468 16.942 2.3606 1 80832000 + 43455 16899 28842 29570 51154 51154 0.06967259419911898 NVVEALIAL 9 Unmodified _NVVEALIAL_ 0 0 0 ENST00000458412.1_2_15:44093902-44094001:+|nuORF;ENSG00000242028|ENST00000442995|HYPK ENST00000458412.1_2_15:44093902-44094001:+|nuORF ENST00000458412.1_2_15:44093902-44094001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2868041992188 2 471.286943 940.559333 0.41872 0.00019734 0.20706 9.7583E-05 0.62578 0.00029492 471.2869138307112 96.344 0.20976 96.039 95.938 96.148 -0.30472 23 13 2 0 0 0 0.43463 1 52590 52590 10.824 0 1 290780 43456 10690 28843 29571 51155 51155 0.0866752859137705 NVVEALIAL 9 Unmodified _NVVEALIAL_ 0 0 0 ENST00000458412.1_2_15:44093902-44094001:+|nuORF;ENSG00000242028|ENST00000442995|HYPK ENST00000458412.1_2_15:44093902-44094001:+|nuORF ENST00000458412.1_2_15:44093902-44094001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 941.5645751953125 1 941.566609 940.559333 0.30527 0.00028743 0.18277 0.00017209 0.48804 0.00045952 941.5663538335434 96.362 0.25352 96.057 95.894 96.148 -0.30472 23 15 2 0 0 0 0.40476 1 52596 52596 12.241 5.5175 1 297900 43457 10690 28843 29571 51156 51156 0.0866752859137705 NVVFNRFFEM 10 Unmodified _NVVFNRFFEM_ 0 0 0 ENST00000598675.1_1_19:7997268-7998765:-|nuORF;ENSG00000104980|ENST00000270538|TIMM44 ENST00000598675.1_1_19:7997268-7998765:-|nuORF ENST00000598675.1_1_19:7997268-7998765:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824462890625 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 14.307 1 14.307 13.807 14.807 0 0 0 0 1.0024 1 6790 6790 0.13989 0 1 43458 2268 28844 29572 51157 51157 -0.01606853963062349 NVVKLLGEQY 10 Unmodified _NVVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.8265380859375 2 581.826963 1161.63937 0.41458 0.00024121 -0.088308 -5.138E-05 0.32627 0.00018983 581.8266239660649 52.987 0.28398 52.987 52.836 53.12 0 34 13 3 0 0 0 0.06987 1 29314 29314 53.404 28.413 1 6641600 43459 4540 28845 29573 51158 51158 0.06501970194585738 NVVKLLGEQY 10 Unmodified _NVVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.82861328125 2 581.826963 1161.63937 0.41638 0.00024226 0.34052 0.00019812 0.7569 0.00044039 581.827092807411 53.488 0.32645 53.036 52.878 53.205 -0.45173 56 15 5 0 0 0 0.01074 2 28895 28895;28998 86.332 40.632 1 60711000 43460 4540 28845 29573 51159;51160 51159 0.06501970194585738 NVVKLLGEQY 10 Unmodified _NVVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8274536132812 2 581.826963 1161.63937 0.65671 0.00038209 0.40241 0.00023414 1.0591 0.00061622 581.827182127367 53.156 0.25872 53.092 52.961 53.219 -0.063423 32 12 3 0 0 0 0.06987 1 28802 28802 53.404 28.413 1 7631000 43461 4540 28845 29573 51161 51161 0.06501970194585738 NVVKLLGEQY 10 Unmodified _NVVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8267211914062 2 581.826963 1161.63937 0.87955 0.00051174 0.69912 0.00040677 1.5787 0.00091851 581.827195232415 59.504 0.49382 53.389 53.093 53.587 -6.1147 77 26 4 0 0 0 0.0021808 2 38077 38077;38211 107.56 69.388 1 164320000 43462 4540 28845 29573 51162;51163 51162 0.06501970194585738 NVVKLLGEQY 10 Unmodified _NVVKLLGEQY_ 0 0 0 ENST00000444314.6_1_11:65101357-65109054:+|nuORF;nc|ENSG00000133884|Q92785-2|DPF2;ENSG00000133884|ENST00000528416|DPF2 ENST00000444314.6_1_11:65101357-65109054:+|nuORF ENST00000444314.6_1_11:65101357-65109054:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.8264770507812 2 581.826963 1161.63937 NaN NaN NaN NaN NaN NaN NaN 60.064 1 53.949 53.449 54.449 -6.1147 0 0 0 0.073691 1 38626 38626 53.404 28.522 1 43463 4540 28845 29573 51164 51164 0.06501970194585738 NVVQAVEQY 9 Unmodified _NVVQAVEQY_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.266357421875 2 525.266739 1048.51892 0.33493 0.00017593 -1.1457 -0.00060181 -0.81079 -0.00042588 525.2660553378755 48.188 0.25918 48.188 48.071 48.33 0 20 12 2 0 0 0 0.028475 1 26415 26415 56.177 25.541 1 6673400 43464 543 28846 29574 51165 51165 -0.00339437799038933 NVVQAVEQY 9 Unmodified _NVVQAVEQY_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2662353515625 2 525.266739 1048.51892 0.59279 0.00031137 -0.27023 -0.00014194 0.32255 0.00016943 525.2645356647901 55.849 0.32645 49.928 49.782 50.108 -5.9211 26 18 2 0 0 0 0.070838 1 35594 35594 39.957 20.7 1 17799000 43465 543 28846 29574 51166 51166 -0.00339437799038933 NVVWSKFETIF 11 Unmodified _NVVWSKFETIF_ 0 0 0 ENSG00000093072|ENST00000399837|ADA2 ENSG00000093072|ENST00000399837|ADA2 ENSG00000093072|ENST00000399837|ADA2 MSMS AL20221201_MKP_PDAC_01 4 457.5767211914062 3 457.243206 1368.70779 NaN NaN NaN NaN NaN NaN NaN 48.131 1 42.897 42.397 43.397 -5.2339 0 0 0 0.76967 1 29950 29950 13.519 1.2911 1 43466 1630 28847 29575 51167 51167 0.03818214774423723 NVVYRYLY 8 Unmodified _NVVYRYLY_ 0 0 0 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2882080078125 2 545.290017 1088.56548 -0.42885 -0.00023385 0.30088 0.00016407 -0.12797 -6.9783E-05 545.2906675790125 37.114 0.61709 36.865 36.708 37.325 -0.2497 31 25 2 0 0 0 0.80232 1 19503 19503 5.2307 0.90143 1 1227600 43467 8596 28848 29576 51168 51168 0.024740468228856116 NVVYRYLY 8 Unmodified _NVVYRYLY_ 0 0 0 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;nc|ENSG00000176463|Q9UIG8-4|SLCO3A1;ENST00000555549.5_1_15:92641439-92706362:+|nuORF;nc|ENSG00000176463|Q9UIG8-3|SLCO3A1 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 545.290017 1088.56548 -0.22302 -0.00012161 4.9724 0.0027114 4.7494 0.0025898 545.2911862087459 36.921 0.079903 36.942 36.904 36.984 0.021545 0.038845 0.004287 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 608140 43468 8596 28848 29576 0.024740468228856116 NVYCGVHRY 9 Unmodified _NVYCGVHRY_ 0 0 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2622680664062 2 555.761101 1109.50765 -0.072684 -4.0395E-05 -0.55518 -0.00030855 -0.62786 -0.00034894 555.7613657283052 28.992 0.17984 28.992 28.883 29.063 0 27 8 4 0 0 0 0.013323 1 14996 14996 71.134 45.734 1 3087900 43469 1441 28849 29577 51169 51169 -0.04272538374175383 NVYCGVHRY 9 Carbamidomethyl (C) _NVYC(Carbamidomethyl (C))GVHRY_ NVYC(1)GVHRY NVYC(61)GVHRY 0 1 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.272705078125 2 584.271832 1166.52911 0.1276 7.4551E-05 -0.21169 -0.00012368 -0.08409 -4.9132E-05 584.2717120829944 22.932 0.25435 20.153 20.015 20.269 -2.7784 39 15 3 0 0 0 0.022193 1 12320 12320 61.357 35.958 1 11118000 43470 1441 28849 29578 51170 51170 134 -0.047491533454603996 NVYDFKTTY 9 Unmodified _NVYDFKTTY_ 0 0 0 nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7747192382812 2 575.774396 1149.53424 0.0017011 9.7943E-07 1.0456 0.00060205 1.0473 0.00060303 575.774716315885 45.197 0.43801 45.197 44.925 45.363 0 70 22 4 0 0 0 0.10247 1 24538 24538 32.786 16.939 1 38125000 43471 6684 28850 29579 51171 51171 -0.03454571001839213 NVYDFKTTY 9 Unmodified _NVYDFKTTY_ 0 0 0 nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7752075195312 2 575.774396 1149.53424 0.13547 7.8002E-05 1.2904 0.00074298 1.4259 0.00082098 575.774624895773 45.453 0.24087 45.128 45.046 45.287 -0.32425 31 13 3 0 0 0 0.013041 1 24265 24265 71.922 24.174 1 25340000 43472 6684 28850 29579 51172 51172 -0.03454571001839213 NVYDFKTTY 9 Unmodified _NVYDFKTTY_ 0 0 0 nc|ENSG00000160075|Q9NP77-2|SSU72;ENST00000378725.3_1_1:1480120-1509937:-|nuORF;ENSG00000160075|ENST00000291386|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 nc|ENSG00000160075|Q9NP77-2|SSU72 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7759399414062 2 575.774396 1149.53424 0.96671 0.00055661 -0.65009 -0.00037431 0.31662 0.0001823 575.7743525696561 51.3 0.42046 45.651 45.397 45.818 -5.649 50 25 3 0 0 0 0.032796 2 32181 32181;32306 53.833 33.379 1 120250000 43473 6684 28850 29579 51173;51174 51173 -0.03454571001839213 NVYEWWFRWRL 11 Unmodified _NVYEWWFRWRL_ 0 0 0 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.9153442382812 2 827.91751 1653.82047 NaN NaN NaN NaN NaN NaN NaN 46.811 1 46.474 45.974 46.974 -0.33664 0 0 0 0.9435 1 25071 25071 0 0 1 43474 4041 28851 29580 51175 51175 0.019709082911049336 NVYEWWFRWRL 11 Unmodified _NVYEWWFRWRL_ 0 0 0 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 ENSG00000127995|ENST00000297273|CASD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.4193115234375 2 827.91751 1653.82047 1.4539 0.0012037 -1.227 -0.0010158 0.22697 0.00018791 827.916217564301 98.095 0.12144 91.92 91.847 91.968 -6.1757 19 7 3 0 0 0 0.74157 1 65019 65019 0.35063 0.35063 1 32573000 43475 4041 28851 29580 51176 51176 0.019709082911049336 NVYSLDGIL 9 Unmodified _NVYSLDGIL_ 0 0 0 ENST00000473828.1_1_1:109633494-109635705:+|nuORF;ENSG00000215717|ENST00000338272|TMEM167B ENST00000473828.1_1_1:109633494-109635705:+|nuORF ENST00000473828.1_1_1:109633494-109635705:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.2654724121094 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 51.519 1 45.87 45.37 46.37 -5.649 0 0 0 0.46757 1 32426 32426 16.942 1.0951 1 43476 10536 28852 29581 51177 51177 0.02130347832053303 NWAKLQRDY 9 Unmodified _NWAKLQRDY_ 0 0 0 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3058471679688 2 597.306729 1192.59891 -0.066621 -3.9793E-05 -0.46964 -0.00028052 -0.53626 -0.00032031 597.3064497761225 46.504 0.74783 41.423 41.082 41.83 -5.0805 332 108 4 0 0 0 0.1773 2 28519 28519;28952 25.399 22.736 1 742500000 43477 3094 28853 29582 51178;51179 51178 0.010310485948139103 NWARIEARL 9 Unmodified _NWARIEARL_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8798522949219 3 376.880602 1127.61998 0.37024 0.00013953 -1.6745 -0.00063108 -1.3042 -0.00049155 376.87985451725217 45.937 0.30091 45.909 45.763 46.064 -0.028011 22 13 2 0 0 0 0.2289 1 24707 24707 20.581 8.3403 1 2556700 43478 1171 28854 29583 51180 51180 0.06127058694301013 NWCFLPVLR 9 Unmodified _NWCFLPVLR_ 0 0 0 REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF REV__ENST00000581181.5_1_18:14179393-14187439:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.20703125 3 383.20755 1146.60082 NaN NaN NaN NaN NaN NaN NaN 84.252 1 78.076 77.576 78.576 -6.1757 0 0 0 0.82579 1 55418 55418 4.5289 2.4429 1 + 43479 29062 28855 29584 51181 51181 0.03338386079030897 NWDQDKLFL 9 Unmodified _NWDQDKLFL_ 0 0 0 REV__ULK4|p.K627Efs*4|1|0.02|ENSG00000168038|chr3:41800263-41800264|-/C|frameshift_variant REV__ULK4|p.K627Efs*4|1|0.02|ENSG00000168038|chr3:41800263-41800264|-/C|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2847900390625 2 589.795663 1177.57677 -0.03917 -2.3102E-05 -2.0374 -0.0012016 -2.0765 -0.0012247 589.7937954969364 31.154 0.18308 31.154 31.051 31.234 0 15 8 2 0 0 0 0.209 1 16218 16218 7.2892 0.56607 1 2161400 + 43480 22282 28856 29585 51182 51182 -0.004911758736170668 NWDTDMYYI 9 Unmodified _NWDTDMYYI_ 0 0 0 nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5031127929688 3 407.502468 1219.48558 0.17608 7.1754E-05 0.89534 0.00036485 1.0714 0.00043661 407.5027563547964 38.247 0.54938 38.247 38.049 38.598 0 73 38 2 0 0 0 0.58865 1 20351 20351 1.0715 0 1 135190000 43481 4466 28857 29586 51183 51183 -0.11538807633246506 NWEKQWEDETY 11 Unmodified _NWEKQWEDETY_ 0 0 0 REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B REV__nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MSMS AL20221201_MKP_PDAC_01 4 764.3246459960938 2 764.32297 1526.63139 NaN NaN NaN NaN NaN NaN NaN 41.655 1 37.047 36.547 37.547 -4.6079 0 0 0 0.83999 1 25048 25048 10.151 7.1553 1 + 43482 24600 28858 29587 51184 51184 -0.11086253583493999 NWFRRIVHT 9 Unmodified _NWFRRIVHT_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MSMS AL20221201_MKP_PDAC_01 4 409.860107421875 3 410.228113 1227.66251 NaN NaN NaN NaN NaN NaN NaN 15.863 1 13.306 12.806 13.806 -2.557 0 0 0 0.84564 1 8175 8175 1.0715 0 1 + 43483 24000 28859 29588 51185 51185 0.05778453822563279 NWGRLVAFF 9 Unmodified _NWGRLVAFF_ 0 0 0 ENSG00000129473|ENST00000250405|BCL2L2;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1 ENSG00000129473|ENST00000250405|BCL2L2 ENSG00000129473|ENST00000250405|BCL2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2996826171875 2 555.298176 1108.5818 -0.10157 -5.6401E-05 1.957 0.0010867 1.8554 0.0010303 555.2994641247717 86.251 0.11443 86.313 86.244 86.358 0.061638 9 6 2 0 0 0 0.0067112 1 47854 47854 112.59 0 1 21847000 43484 4139 28860 29589 51186 51186 0.0318517277967203 NWGRLVAFF 9 Unmodified _NWGRLVAFF_ 0 0 0 ENSG00000129473|ENST00000250405|BCL2L2;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1 ENSG00000129473|ENST00000250405|BCL2L2 ENSG00000129473|ENST00000250405|BCL2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.299072265625 2 555.298176 1108.5818 1.122 0.00062305 -0.49537 -0.00027508 0.62664 0.00034797 555.8008089356906 99.426 0.24415 93.25 93.097 93.341 -6.1757 36 15 4 0 0 0 0.042911 1 66249 66249 48.346 0 1 116570000 43485 4139 28860 29589 51187 51187 0.0318517277967203 NWGRVVALF 9 Unmodified _NWGRVVALF_ 0 0 0 nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX;nc|ENSG00000087088|Q07812-6|BAX;nc|ENSG00000087088|Q07812-4|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF nc|ENSG00000087088|Q07812-5|BAX nc|ENSG00000087088|Q07812-5|BAX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2987670898438 2 531.298176 1060.5818 0.11925 6.3356E-05 0.074288 3.9469E-05 0.19354 0.00010282 531.2984963491319 77.297 0.38383 77.347 77.149 77.533 0.050102 47 15 4 0 0 0 0.0082281 2 42609 42609;42710 92.822 66.481 1 11559000 43486 1452 28861 29590 51188;51189 51188 0.05393172779645283 NWGRVVALF 9 Unmodified _NWGRVVALF_ 0 0 0 nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX;nc|ENSG00000087088|Q07812-6|BAX;nc|ENSG00000087088|Q07812-4|BAX;ENST00000513545.5_1_19:49458896-49464890:+|nuORF nc|ENSG00000087088|Q07812-5|BAX nc|ENSG00000087088|Q07812-5|BAX MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2979125976562 2 531.298176 1060.5818 1.2816 0.0006809 -0.5376 -0.00028563 0.74397 0.00039527 531.297826955367 97.749 0.19254 91.574 91.476 91.668 -6.1757 28 13 3 0 0 0 0.0095811 1 64776 64776 81.613 51.388 1 90540000 43487 1452 28861 29590 51190 51190 0.05393172779645283 NWGVQFYEYPD 11 Unmodified _NWGVQFYEYPD_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2072448730469 3 473.20682 1416.59863 0.61918 0.000293 -0.71591 -0.00033878 -0.09673 -4.5773E-05 473.2064211988733 49.815 0.27074 49.815 49.716 49.986 0 21 12 2 0 0 0 0.73114 1 27457 27457 1.3296 0 1 2906500 + 43488 22400 28862 29591 51191 51191 -0.09300415915686244 NWGVQFYEYPD 11 Unmodified _NWGVQFYEYPD_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 473.20682 1416.59863 1.2548 0.00059378 -1.4281 -0.0006758 -0.17331 -8.2013E-05 473.2056351749795 50.052 0.11954 50.003 49.947 50.066 -0.048828 0.094123 -0.00059268 NaN 1.3296 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1221100 + 43489 22400 28862 29591 -0.09300415915686244 NWGVQLTRWL 10 Unmodified _NWGVQLTRWL_ 0 0 0 REV__nc|ENSG00000157335|Q8NCF0-2|CLEC18C REV__nc|ENSG00000157335|Q8NCF0-2|CLEC18C MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8462524414062 2 636.846022 1271.67749 1.0058 0.00064055 0.1628 0.00010368 1.1686 0.00074423 636.8461693944411 96.261 0.22137 90.085 89.944 90.166 -6.1757 18 13 2 0 0 0 0.35903 1 63812 63812 24.021 1.2843 1 10706000 + 43490 20497 28863 29592 51192 51192 0.05251900899907014 NWHPGTGP 8 Unmodified _NWHPGTGP_ 0 0 0 ENST00000496391.5_2_7:102065935-102066592:+|nuORF ENST00000496391.5_2_7:102065935-102066592:+|nuORF ENST00000496391.5_2_7:102065935-102066592:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8854370117188 2 433.201202 864.387851 0.43623 0.00018898 -1.7391 -0.00075337 -1.3029 -0.0005644 433.20057214372616 53.536 0.18045 53.084 53.005 53.185 -0.45173 14 8 2 0 0 0 8.7369 1 28988 28988 5.7604 5.7604 1 1162200 43491 14367 28864 29593 51193 51193 -0.049767836564228674 NWIDPSPL 8 Unmodified _NWIDPSPL_ 0 0 0 REV__ENSG00000124196|ENST00000373003|GTSF1L REV__ENSG00000124196|ENST00000373003|GTSF1L MSMS AL20221201_MKP_PDAC_01 4 470.9053649902344 2 471.239993 940.465432 NaN NaN NaN NaN NaN NaN NaN 69.16 1 62.985 62.485 63.485 -6.1757 0 0 0 0.93066 1 45159 45159 14.582 1.0738 1 + 43492 19425 28865 29594 51194 51194 -0.007181905109064246 NWKIANGLI 9 Unmodified _NWKIANGLI_ 0 0 0 REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7988891601562 2 514.798009 1027.58147 NaN NaN NaN NaN NaN NaN NaN 35.912 1 35.937 35.437 36.437 0.024967 0 0 0 0.82739 1 19007 19007 4.3292 0.73274 1 + 43493 29131 28866 29595 51195 51195 0.06877753059779934 NWKKNFSHYAP 11 Unmodified _NWKKNFSHYAP_ 0 0 0 REV__nc|ENSG00000135775|Q14746-2|COG2 REV__nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5667724609375 3 464.566683 1390.67822 0.33836 0.00015719 -0.94749 -0.00044017 -0.60913 -0.00028298 464.56627251863347 53.536 0.28019 53.084 52.943 53.223 -0.45173 45 13 4 0 0 0 0.71503 1 28931 28931 2.8433 0.4085 1 13402000 + 43494 20099 28867 29596 51196 51196 -0.001493044510425534 NWKPESKI 8 Unmodified _NWKPESKI_ 0 0 0 ENST00000422599.1_1_20:48573579-48573780:+|nuORF ENST00000422599.1_1_20:48573579-48573780:+|nuORF ENST00000422599.1_1_20:48573579-48573780:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.755859375 2 501.274367 1000.53418 -0.29663 -0.00014869 0.53072 0.00026604 0.23409 0.00011734 501.2744630124238 39.031 0.14049 38.744 38.696 38.836 -0.28687 9 5 2 0 0 0 8.7369 1 20564 20564 9.3474 0 1 2204900 43495 13119 28868 29597 51197 51197 0.033934737887989286 NWKSQSLEWL 10 Unmodified _NWKSQSLEWL_ 0 0 0 ENST00000520635.5_1_8:82626199-82627143:-|nuORF;ENST00000517353.5_1_8:82627029-82645114:-|nuORF ENST00000520635.5_1_8:82626199-82627143:-|nuORF ENST00000520635.5_1_8:82626199-82627143:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8890075683594 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 20.11 1 17.454 16.954 17.954 -2.6564 0 0 0 0.97855 1 10695 10695 3.0723 0.22898 1 43496 14673 28869 29598 51198 51198 0.007201845634881465 NWLHLSTHMGR 11 Unmodified _NWLHLSTHMGR_ 0 0 0 REV__ENSG00000166603|ENST00000299766|MC4R REV__ENSG00000166603|ENST00000299766|MC4R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2268676757812 3 451.227784 1350.66152 NaN NaN NaN NaN NaN NaN NaN 16.86 1 16.865 16.365 17.365 0.0050564 0 0 0 0.9406 1 8474 8474 2.084 0.34169 1 + 43497 22137 28870 29599 51199 51199 0.00021871391322747513 NWLKLRCMQ 9 Unmodified _NWLKLRCMQ_ 0 0 0 REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF REV__ENST00000319074.5_1_14:23567332-23567638:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.877197265625 3 397.875694 1190.60525 1.0805 0.00042989 4.4474 0.0017695 5.5278 0.0021994 397.8765487266557 36.843 0.36146 32.56 32.388 32.75 -4.2835 27 21 2 0 0 0 0.43463 1 21560 21560 7.1017 1.699 1 12263000 + 43498 25489 28871 29600 51200 51200 0.01757527230302003 NWLWENQAY 9 Unmodified _NWLWENQAY_ 0 0 0 ENST00000508628.6_1_17:78319367-78319424:+|nuORF ENST00000508628.6_1_17:78319367-78319424:+|nuORF ENST00000508628.6_1_17:78319367-78319424:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2750854492188 2 612.277638 1222.54072 NaN NaN NaN NaN NaN NaN NaN 55.466 1 55.466 54.966 55.966 0 0 0 0 0.7243 1 30814 30814 8.5933 2.3875 1 43499 14561 28872 29601 51201 51201 -0.06164633050457269 NWNFMSQY 8 Unmodified _NWNFMSQY_ 0 0 0 REV__nc|ENSG807|P61550|ERVS71-1 REV__nc|ENSG807|P61550|ERVS71-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7296752929688 2 545.226559 1088.43857 0.31902 0.00017394 -0.025852 -1.4095E-05 0.29317 0.00015984 545.2265038702303 83.055 0.36171 82.557 82.357 82.719 -0.49751 25 14 2 0 0 0 0.80722 1 45452 45452 2.3027 0.4585 1 1179500 + 43500 30043 28873 29602 51202 51202 -0.10211622393740072 NWNFMSQY 8 Unmodified _NWNFMSQY_ 0 0 0 REV__nc|ENSG807|P61550|ERVS71-1 REV__nc|ENSG807|P61550|ERVS71-1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 545.226559 1088.43857 0.31902 0.00017394 -0.025852 -1.4095E-05 0.29317 0.00015984 545.2265038702303 83.055 0.36171 82.557 82.357 82.719 -0.49751 0 0 NaN 2.3027 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1179500 + 43501 30043 28873 29602 -0.10211622393740072 NWPALAGH 8 Unmodified _NWPALAGH_ 0 0 0 REV__chr8:143045359-143045573|91|20.2|0.0|20.95|-|2|LY6S,LY6S|1 REV__chr8:143045359-143045573|91|20.2|0.0|20.95|-|2|LY6S,LY6S|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.22021484375 2 433.219395 864.424236 1.1478 0.00049723 1.6366 0.000709 2.7843 0.0012062 433.22066823713925 88.811 0.76219 82.636 82.26 83.022 -6.1757 69 42 3 0 0 0 0.72953 1 58583 58583 14.582 0 1 12527000 + 43502 16819 28874 29603 51203 51203 -0.013399067597106296 NWPEDTNFCF 10 Carbamidomethyl (C) _NWPEDTNFC(Carbamidomethyl (C))F_ NWPEDTNFC(1)F NWPEDTNFC(86)F 0 1 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.2646484375 2 665.26387 1328.51319 0.9431 0.00062741 0.019033 1.2662E-05 0.96213 0.00064007 665.7653714656519 87.896 0.82407 81.72 81.344 82.168 -6.1757 58 45 2 0 0 0 0.01074 3 57983 57856;57983;58113 86.332 65.416 1 19752000 43503 693 28875 29604 51204;51205;51206 51205 51 -0.13792904373030979 NWPRPAMCF 9 Unmodified _NWPRPAMCF_ 0 0 0 REV__ENSG00000115255|ENST00000233596|REEP6 REV__ENSG00000115255|ENST00000233596|REEP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.506103515625 3 374.50549 1120.49464 0.67629 0.00025328 -0.57446 -0.00021514 0.10183 3.8136E-05 374.50580007865443 84.771 0.57216 78.595 78.366 78.938 -6.1757 78 33 3 0 0 0 0.47846 1 55925 55925 8.7454 8.7454 1 22331000 + 43504 18964 28876 29605 51207 51207 -0.06078692757932913 NWPSLLRHRFL 11 Unmodified _NWPSLLRHRFL_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2741394042969 3 480.273722 1437.79934 1.0977 0.0005272 -1.8107 -0.00086961 -0.71295 -0.00034241 480.2724073088667 88.699 0.41604 82.523 82.311 82.727 -6.1757 36 22 2 0 0 0 0.62014 1 58520 58520 10.315 0.55098 1 14582000 43505 4347 28877 29606 51208 51208 0.09794942982262 NWPSRPYLF 9 Unmodified _NWPSRPYLF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.30126953125 2 590.300916 1178.58728 0.60709 0.00035837 0.71719 0.00042336 1.3243 0.00078173 590.3013974147382 68.884 0.55919 68.909 68.582 69.141 0.025146 63 26 3 0 0 0 0.013323 2 37791 37791;37899 71.134 49.387 1 27523000 43506 4081 28878 29607 51209;51210 51209 0.005128515714659443 NWPSRPYLF 9 Unmodified _NWPSRPYLF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2984619140625 2 590.300916 1178.58728 0.8349 0.00049284 -1.38 -0.0008146 -0.54507 -0.00032176 590.3004435177912 81.206 1.7159 75.03 74.35 76.066 -6.1757 146 96 2 0 0 0 0.012668 5 53632 53163;53293;53460;53632;53761 72.968 43.886 1 26797000 43507 4081 28878 29607 51211;51212;51213;51214;51215 51214 0.005128515714659443 NWPSRPYLF 9 Unmodified _NWPSRPYLF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MSMS AL20221201_MKP_PDAC_01 4 590.3019409179688 2 590.300916 1178.58728 NaN NaN NaN NaN NaN NaN NaN 82.083 1 75.908 75.408 76.408 -6.1757 0 0 0 0.065563 1 53906 53906 52.268 23.187 1 43508 4081 28878 29607 51216 51216 0.005128515714659443 NWQIKFQAW 9 Unmodified _NWQIKFQAW_ 0 0 0 REV__nc|ENSG00000004948|P30988-4|CALCR REV__nc|ENSG00000004948|P30988-4|CALCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8793334960938 3 407.545219 1219.61383 0.37637 0.00015339 0.48646 0.00019826 0.86283 0.00035164 407.54530032257384 57.088 0.25487 56.603 56.479 56.734 -0.48554 19 11 2 0 0 0 0.49272 1 31024 31024 4.897 0.70751 1 3040900 + 43509 29480 28879 29608 51217 51217 0.012805404628124961 NWRPRFRYYHW 11 Unmodified _NWRPRFRYYHW_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.9503784179688 3 560.948009 1679.8222 NaN NaN NaN NaN NaN NaN NaN 105.94 1 105.94 105.44 106.44 0 0 0 0 0.9435 1 58175 58175 0 0 1 43510 5210 28880 29609 51218 51218 0.00947962099758115 NWRPRFRYYHW 11 Unmodified _NWRPRFRYYHW_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000560023.1_1_15:34533432-34537514:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.95068359375 3 560.948009 1679.8222 NaN NaN NaN NaN NaN NaN NaN 106.38 1 106.29 105.79 106.79 -0.088829 0 0 0 0.9435 1 57827 57827 0 0 1 43511 5210 28880 29609 51219 51219 0.00947962099758115 NWRRKLRWPRR 11 Unmodified _NWRRKLRWPRR_ 0 0 0 REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.480224609375 2 812.482008 1622.94946 NaN NaN NaN NaN NaN NaN NaN 53.724 1 53.272 52.772 53.772 -0.45173 0 0 0 0.9435 1 29077 29077 0 0 1 + 43512 28071 28881 29610 51220 51220 0.162907277645445 NWRRLFSL 8 Unmodified _NWRRLFSL_ 0 0 0 REV__nc|ENSG00000095970|Q9NZC2-2|TREM2 REV__nc|ENSG00000095970|Q9NZC2-2|TREM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3090209960938 2 546.309075 1090.6036 0.78188 0.00042715 -3.3916 -0.0018528 -2.6097 -0.0014257 546.3072414267799 75.168 0.56773 68.993 68.702 69.27 -6.1757 50 30 2 0 0 0 0.72953 1 49187 49187 14.582 0 1 24425000 + 43513 17954 28882 29611 51221 51221 0.0619197752821492 NWSFVVFPSTF 11 Unmodified _NWSFVVFPSTF_ 0 0 0 REV__ENSG00000144481|ENST00000324695|TRPM8 REV__ENSG00000144481|ENST00000324695|TRPM8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2217102050781 3 444.220401 1329.63937 -0.0041166 -1.8287E-06 1.2806 0.00056886 1.2765 0.00056704 444.22179543942786 25.623 0.4477 22.734 22.419 22.867 -2.8889 34 24 2 0 0 0 0.53952 1 13991 13991 8.2864 0 1 7532600 + 43514 20711 28883 29612 51222 51222 -0.012260298054343366 NWSGRYSARSL 11 Unmodified _NWSGRYSARSL_ 0 0 0 REV__ENST00000393459.5_1_10:102791110-102792147:+|nuORF REV__ENST00000393459.5_1_10:102791110-102792147:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8854370117188 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 53.574 1 53.122 52.622 53.622 -0.45173 0 0 0 0.94011 1 28988 28988 2.4348 0.34878 1 + 43515 26420 28884 29613 51223 51223 0.0010893450946696248 NWTAADQAY 9 Unmodified _NWTAADQAY_ 0 0 0 nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC nc|ENSG00000041982|P24821-4|TNC nc|ENSG00000041982|P24821-4|TNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.228271484375 2 520.227613 1038.44067 0.45544 0.00023693 0.75499 0.00039277 1.2104 0.0006297 520.2279017577262 82.935 0.45384 82.438 82.244 82.698 -0.49751 43 18 3 0 0 0 0.40476 1 45341 45341 12.241 2.1667 1 5967500 43516 658 28885 29614 51224 51224 -0.07700870384292102 NWTAADQAY 9 Unmodified _NWTAADQAY_ 0 0 0 nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC nc|ENSG00000041982|P24821-4|TNC nc|ENSG00000041982|P24821-4|TNC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.7664794921875 2 520.227613 1038.44067 1.6192 0.00084237 -3.2523 -0.0016919 -1.633 -0.00084955 520.2258673027206 47.523 0.41045 42.289 42.072 42.482 -5.2339 60 23 3 0 0 0 0.209 1 29359 29359 7.2892 0.56607 1 37921000 43517 658 28885 29614 51225 51225 -0.07700870384292102 NWTLRQSAPD 10 Unmodified _NWTLRQSAPD_ 0 0 0 REV__ENST00000460602.5_1_1:1688544-1696851:-|nuORF REV__ENST00000460602.5_1_1:1688544-1696851:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 594.2958984375 2 594.293819 1186.57309 NaN NaN NaN NaN NaN NaN NaN 36.511 1 32.233 31.733 32.733 -4.2775 0 0 0 0.57227 1 21329 21329 22.736 8.1546 1 + 43518 17019 28886 29615 51226 51226 -0.012738456474835402 NWTTAAPLLL 10 Unmodified _NWTTAAPLLL_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3126220703125 2 550.310949 1098.60735 1.919 0.001056 2.0803 0.0011448 3.9993 0.0022008 550.3120962120232 93.835 0.34857 93.858 93.689 94.038 0.022987 36 13 3 0 0 0 5.0281E-05 1 52158 52158 118.89 61.423 1 5907800 43519 4594 28887 29616 51227 51227 0.06198602511426543 NWTTAAPLLL 10 Unmodified _NWTTAAPLLL_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3117065429688 2 550.310949 1098.60735 1.1659 0.00064159 0.21934 0.0001207 1.3852 0.00076229 550.3110713159468 100.25 0.16344 94.077 93.978 94.141 -6.1757 23 9 3 0 0 0 5.0281E-05 1 66967 66967 118.89 75.036 1 72536000 43520 4594 28887 29616 51228 51228 0.06198602511426543 NWVCVSGNYL 10 Unmodified _NWVCVSGNYL_ 0 0 0 REV__ENST00000504295.1_1_3:139101974-139108392:-|nuORF REV__ENST00000504295.1_1_3:139101974-139108392:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.5156860351562 3 385.51482 1153.52263 NaN NaN NaN NaN NaN NaN NaN 21.151 1 18.458 17.958 18.958 -2.693 0 0 0 0.96981 1 11299 11299 1.9064 0 1 + 43521 23419 28888 29617 51229 51229 -0.04799091296831648 NWVQVIIPI 9 Unmodified _NWVQVIIPI_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3292236328125 2 541.32386 1080.63317 0.24841 0.00013447 3.5331 0.0019125 3.7815 0.002047 541.3257413455467 48.856 0.62611 48.812 48.609 49.235 -0.04369 83 30 4 0 0 0 0.55144 1 26543 26543 4.3292 0 1 54642000 + 43522 17607 28889 29618 51230 51230 0.0960749675371062 NWVRYCIF 8 Unmodified _NWVRYCIF_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2552490234375 2 550.770937 1099.52732 0.33608 0.0001851 2.594 0.0014287 2.9301 0.0016138 550.7711387794615 37.461 0.34676 37.461 37.333 37.68 0 33 18 3 0 0 0 8.7369 1 19876 19876 5.7604 0 1 7525600 43523 2211 28890 29619 51231 51231 -0.01846162363426629 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2423706054688 2 500.242732 998.470912 0.30032 0.00015024 1.2131 0.00060684 1.5134 0.00075708 500.24314196971164 64.803 0.29074 64.803 64.587 64.878 0 44 13 4 0 0 0 0.010877 2 36068 36068;36169 77.984 50.402 1 11949000 43524 7336 28891 29620 51232;51233 51232 -0.028385117190964593 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.4781494140625 1 999.478188 998.470912 -0.13937 -0.0001393 0.24093 0.00024081 0.10156 0.00010151 999.4783382889719 64.733 0.34101 64.733 64.614 64.955 0 35 15 3 0 0 0 0.0095811 2 36180 36079;36180 81.613 58.465 1 4546500 43525 7336 28891 29620 51234;51235 51235 -0.028385117190964593 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.4768676757812 1 999.478188 998.470912 0.98348 0.00098297 0.022307 2.2295E-05 1.0058 0.0010053 999.4781131660118 71.67 0.29556 65.494 65.324 65.619 -6.1757 22 15 2 0 0 0 0.0083938 1 46836 46836 108 61.976 1 25805000 43526 7336 28891 29620 51236 51236 -0.028385117190964593 NYAAALETF 9 Unmodified _NYAAALETF_ 0 0 0 nc|ENSG00000165416|Q9Y2Z0|SUGT1;ENSG00000165416|ENST00000310528|SUGT1;ENST00000379514.2_1_9:33503785-33510678:-|nuORF nc|ENSG00000165416|Q9Y2Z0|SUGT1 nc|ENSG00000165416|Q9Y2Z0|SUGT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.7468566894531 2 500.242732 998.470912 1.2644 0.00063248 4.0808 0.0020414 5.3452 0.0026739 500.2456991334911 71.654 0.47068 65.479 65.133 65.604 -6.1757 42 24 3 0 0 0 0.062767 1 46788 46788 48.346 33.508 1 31130000 43527 7336 28891 29620 51237 51237 -0.028385117190964593 NYAAPSPYV 9 Unmodified _NYAAPSPYV_ 0 0 0 ENSG00000134323|ENST00000281043|MYCN ENSG00000134323|ENST00000281043|MYCN ENSG00000134323|ENST00000281043|MYCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2373352050781 2 491.23745 980.460347 0.11659 5.7273E-05 0.69768 0.00034273 0.81427 0.0004 491.23891020795486 64.815 0.24823 64.815 64.63 64.878 0 17 10 2 0 0 0 0.16226 1 36127 36127 26.884 8.7487 1 1074400 43528 4593 28892 29621 51238 51238 -0.030664943735246197 NYADPYGFGAI 11 Unmodified _NYADPYGFGAI_ 0 0 0 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2720947265625 2 594.272021 1186.52949 0.40229 0.00023907 0.038677 2.2985E-05 0.44097 0.00026205 594.2720123249431 47.651 0.62628 47.612 47.319 47.946 -0.038643 61 29 3 0 0 0 0.63851 1 25692 25692 9.3831 0.40688 1 12577000 + 43529 18691 28893 29622 51239 51239 -0.056314551446121186 NYADPYGFGAI 11 Unmodified _NYADPYGFGAI_ 0 0 0 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2704467773438 2 594.272021 1186.52949 0.18784 0.00011163 0.053221 3.1628E-05 0.24106 0.00014326 594.2722742195047 51.987 0.29485 51.928 51.792 52.087 -0.058918 42 13 4 0 0 0 0.63851 1 28122 28122 9.3831 0.78985 1 9632100 + 43530 18691 28893 29622 51240 51240 -0.056314551446121186 NYADQISRL 9 Unmodified _NYADQISRL_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2786865234375 2 540.277638 1078.54072 -0.10795 -5.8322E-05 -0.14 -7.5638E-05 -0.24795 -0.00013396 540.277677196532 45.157 0.23149 45.157 45.075 45.306 0 38 11 4 0 0 0 0.013609 1 24581 24581 70.332 30.382 1 73383000 43531 384 28894 29623 51241 51241 0.004593669495079666 NYADQISRL 9 Unmodified _NYADQISRL_ 0 0 0 nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3;ENST00000514613.5_1_17:49067015-49156972:-|nuORF nc|ENSG00000008294|O60271-4|SPAG9 nc|ENSG00000008294|O60271-4|SPAG9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2778930664062 2 540.277638 1078.54072 NaN NaN NaN NaN NaN NaN NaN 45.433 1 45.109 44.609 45.609 -0.32425 0 0 0 0.0058553 1 24272 24272 125.53 56.424 1 43532 384 28894 29623 51242 51242 0.004593669495079666 NYAELLCVNH 10 Carbamidomethyl (C) _NYAELLC(Carbamidomethyl (C))VNH_ NYAELLC(1)VNH NYAELLC(52)VNH 0 1 0 REV__ENSG00000276023|ENST00000617516|DUSP14 REV__ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.7904663085938 2 616.790055 1231.56556 0.65748 0.00040552 -0.04158 -2.5646E-05 0.61589 0.00037988 616.7900004255952 68.086 0.56827 68.111 67.713 68.282 0.025154 85 27 5 0 0 0 0.077785 1 37316 37316 51.63 15.503 1 84423000 + 43533 24656 28895 29624 51243 51243 1053 -0.040963212393990034 NYAENILTL 9 Unmodified _NYAENILTL_ 0 0 0 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7777709960938 2 525.776939 1049.53933 0.45267 0.000238 1.0276 0.00054029 1.4803 0.00077829 525.7775264050761 76.573 0.49393 76.573 76.315 76.809 0 60 19 4 0 0 0 0.024882 2 42601 42502;42601 58.679 26.785 1 9222100 43534 4406 28896 29625 51244;51245 51245 0.016537328607682866 NYAENILTL 9 Unmodified _NYAENILTL_ 0 0 0 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.77734375 2 525.776939 1049.53933 -0.42483 -0.00022337 0.46427 0.0002441 0.039437 2.0735E-05 525.7775360485731 77.008 0.59533 76.529 76.322 76.918 -0.47945 73 26 4 0 0 0 0.039985 2 42122 42122;42223 49.933 21.679 1 6265300 43535 4406 28896 29625 51246;51247 51246 0.016537328607682866 NYAENILTL 9 Unmodified _NYAENILTL_ 0 0 0 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 ENSG00000132436|ENST00000433017|FIGNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7767944335938 2 525.776939 1049.53933 0.33896 0.00017822 -0.46108 -0.00024242 -0.12211 -6.4203E-05 525.7768819054191 84.555 0.6125 78.379 78.107 78.72 -6.1757 82 35 3 0 0 0 0.015445 3 55670 55538;55670;55831 68.081 37.856 1 48090000 43536 4406 28896 29625 51248;51249;51250 51249 0.016537328607682866 NYAERAKEMM 10 Unmodified _NYAERAKEMM_ 0 0 0 REV__nc|ENSG00000101161|O94906-2|PRPF6 REV__nc|ENSG00000101161|O94906-2|PRPF6 MSMS AL20221201_MKP_PDAC_01 4 621.7825317382812 2 621.783915 1241.55328 NaN NaN NaN NaN NaN NaN NaN 57.291 1 51.264 50.764 51.764 -6.0275 0 0 0 0.49971 1 36638 36638 26.268 2.2476 1 + 43537 18138 28897 29626 51251 51251 -0.05783680974127492 NYAEWDLRDID 11 Unmodified _NYAEWDLRDID_ 0 0 0 nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A nc|ENSG00000276234|O75478-2|TADA2A nc|ENSG00000276234|O75478-2|TADA2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 705.3226318359375 2 705.320231 1408.62591 NaN NaN NaN NaN NaN NaN NaN 76.595 1 76.595 76.095 77.095 0 0 0 0 0.93669 1 42585 42585 4.897 3.0528 1 43538 10917 28898 29627 51252 51252 -0.062059323753373974 NYAFLHRTL 9 Unmodified _NYAFLHRTL_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8738098144531 3 378.873336 1133.59818 0.39296 0.00014888 -0.27432 -0.00010393 0.11865 4.4952E-05 378.8732307485684 43.42 0.28168 43.404 43.246 43.528 -0.015667 28 12 3 0 0 0 0.1685 1 23235 23235 24.882 9.9244 1 35250000 43539 8856;4065 28899 29628 51253 51253 0.03672253945774173 NYAFLHRTL 9 Unmodified _NYAFLHRTL_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8067626953125 2 567.806365 1133.59818 0.57173 0.00032463 -0.38902 -0.00022089 0.18271 0.00010374 567.8062735381098 43.448 0.26128 43.432 43.266 43.528 -0.015667 29 11 3 0 0 0 0.013609 1 23251 23251 70.332 26.474 1 37994000 43540 8856;4065 28899 29628 51254 51254 0.03672253945774173 NYAFLHRTL 9 Unmodified _NYAFLHRTL_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.806884765625 2 567.806365 1133.59818 1.0773 0.0006117 -0.39306 -0.00022318 0.68426 0.00038852 567.8062528932736 48.35 0.37496 43.116 42.907 43.282 -5.2339 51 22 3 0 0 0 0.0033237 2 30145 30015;30145 114.2 70.343 1 53033000 43541 8856;4065 28899 29628 51255;51256 51256 0.03672253945774173 NYAFLHRTL 9 Unmodified _NYAFLHRTL_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B;ENSG00000128394|ENST00000308521|APOBEC3F ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.873779296875 3 378.873336 1133.59818 1.4165 0.00053668 -0.0027726 -1.0505E-06 1.4137 0.00053563 378.87328930358785 48.324 0.41159 43.09 42.907 43.318 -5.2339 60 24 3 0 0 0 0.43515 2 30030 30030;30155 10.899 6.7095 1 68503000 43542 8856;4065 28899 29628 51257;51258 51257 0.03672253945774173 NYAGRWDVLI 10 Unmodified _NYAGRWDVLI_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.8160400390625 2 603.81693 1205.61931 0.57646 0.00034807 -0.33677 -0.00020335 0.23968 0.00014473 603.8164481140902 72.252 0.19852 71.776 71.636 71.834 -0.47609 13 8 2 0 0 0 0.14688 1 39529 39529 40.239 19.786 1 904800 43543 2302 28900 29629 51259 51259 0.024722192546050792 NYAGRWDVLI 10 Unmodified _NYAGRWDVLI_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8161010742188 2 603.81693 1205.61931 0.48421 0.00029238 0.21458 0.00012957 0.6988 0.00042194 603.8169549401579 88.799 0.13631 82.623 82.569 82.706 -6.1757 10 7 2 0 0 0 0.025861 1 58592 58592 70.332 28.492 1 7496300 43544 2302 28900 29629 51260 51260 0.024722192546050792 NYAGRWDVLI 10 Unmodified _NYAGRWDVLI_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MSMS AL20221201_MKP_PDAC_01 4 603.817138671875 2 603.81693 1205.61931 NaN NaN NaN NaN NaN NaN NaN 88.999 1 82.823 82.323 83.323 -6.1757 0 0 0 0.12081 1 58736 58736 49.554 21.925 1 43545 2302 28900 29629 51261 51261 0.024722192546050792 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ NYAIC(1)NKTNF NYAIC(52)NKTNF 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.790283203125 2 622.790055 1243.56556 1.1581 0.00072124 0.24244 0.00015099 1.4005 0.00087222 622.7899315960836 65.997 0.49389 66.007 65.747 66.241 0.0095596 65 24 3 0 0 0 0.077785 2 36103 36103;36210 51.63 22.548 1 24724000 + 43546 19992 28901 29630 51262;51263 51262 1040 -0.04648321239415054 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ NYAIC(1)NKTNF NYAIC(46)NKTNF 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.7916870117188 2 622.790055 1243.56556 0.86566 0.00053913 -1.2115 -0.00075452 -0.34585 -0.00021539 622.7895376691063 71.687 0.97154 65.511 65.169 66.141 -6.1757 94 51 2 0 0 0 0.10424 4 47108 46826;46960;47108;47260 45.7 13.662 1 66626000 + 43547 19992 28901 29630 51264;51265;51266;51267 51266 1040 -0.04648321239415054 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ NYAIC(1)NKTNF NYAIC(52)NKTNF 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.7906494140625 2 622.790055 1243.56556 0.74727 0.00046539 0.35075 0.00021845 1.098 0.00068384 622.7900470798645 74.864 1.2924 68.689 67.977 69.27 -6.1757 152 68 3 0 0 0 0.077785 2 48939 48939;49056 51.63 18.844 1 29614000 + 43548 19992 28901 29630 51268;51269 51268 1040 -0.04648321239415054 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.790055 1243.56556 0.16583 0.00010328 -0.08763 -5.4575E-05 0.078201 4.8703E-05 622.7903353645978 66.629 0.47585 66.146 65.838 66.314 -0.48323 0.024603 -0.00030258 NaN 51.63 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2181800 + 43549 19992 28901 29630 1040 -0.04648321239415054 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 622.790055 1243.56556 1.1581 0.00072124 0.24244 0.00015099 1.4005 0.00087222 622.7899315960836 65.997 0.49389 66.007 65.747 66.241 0.0095596 -0.1145 0.00010854 NaN 51.63 65 24 3 NaN NaN NaN NaN 0 NaN NaN 0 24724000 + 43550 19992 28901 29630 1040 -0.04648321239415054 NYAICNKTNF 10 Carbamidomethyl (C) _NYAIC(Carbamidomethyl (C))NKTNF_ 0 1 0 REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF REV__ENST00000543420.5_1_12:10464095-10467389:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 622.790055 1243.56556 0.72272 0.00045011 -1.6936 -0.0010548 -0.97087 -0.00060465 623.2914920316255 72.387 0.10004 66.211 66.159 66.259 -6.1757 0.089896 -0.0023029 NaN 51.63 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 9426000 + 43551 19992 28901 29630 1040 -0.04648321239415054 NYAIFDEGHML 11 Oxidation (M) _NYAIFDEGHM(Oxidation (M))L_ NYAIFDEGHM(1)L NYAIFDEGHM(46)L 0 0 1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-3|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 nc|ENSG00000163104|Q9H4L7-2|SMARCAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.7965087890625 2 663.29517 1324.57579 0.29088 0.00019294 0.36918 0.00024487 0.66006 0.00043781 663.7966811847192 57.52 0.31036 57.52 57.346 57.657 0 17 14 2 0 0 0 0.073964 1 31998 31998 45.7 28.587 1 2610500 43552 6951 28902 29631 51270 51270 1199 -0.07351758304844225 NYAKQLRNL 9 Unmodified _NYAKQLRNL_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8803405761719 3 373.88049 1118.61964 1.6478 0.00061608 0.57095 0.00021347 2.2187 0.00082955 373.8803396944419 32.292 0.167 28.435 28.366 28.533 -3.8562 14 9 2 0 0 0 0.18144 1 18406 18406 24.991 16.835 1 7816200 43553 4989 28903 29632 51271 51271 0.06507638974471774 NYAKVLLKL 9 Unmodified _NYAKVLLKL_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3394165039062 2 531.33951 1060.66447 -0.18729 -9.9515E-05 1.073 0.00057015 0.88576 0.00047064 531.3400410865859 53.455 0.19362 53.391 53.306 53.499 -0.063423 14 9 2 0 0 0 0.0086904 1 29001 29001 107.19 52.413 1 3855000 43554 269 28904 29633 51272 51272 0.13656069787793967 NYALKMFLY 9 Unmodified _NYALKMFLY_ 0 0 0 ENSG00000009844|ENST00000367630|VTA1;nc|ENSG00000009844|Q9NP79-2|VTA1 ENSG00000009844|ENST00000367630|VTA1 ENSG00000009844|ENST00000367630|VTA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.3201293945312 2 581.801903 1161.58925 1.1951 0.00069529 -0.73842 -0.00042962 0.45664 0.00026567 581.8021699475122 96.28 0.096817 90.105 90.069 90.166 -6.1757 7 5 2 0 0 0 0.069627 1 63798 63798 37.974 23.136 1 8372600 43555 408 28905 29634 51273 51273 0.014921442650575045 NYALVSVLNL 10 Unmodified _NYALVSVLNL_ 0 0 0 nc|ENSG00000180638|Q86VL8-2|SLC47A2;nc|ENSG00000180638|Q86VL8-5|SLC47A2;ENSG00000180638|ENST00000433844|SLC47A2;nc|ENSG00000180638|Q86VL8-4|SLC47A2;nc|ENSG00000180638|Q86VL8|SLC47A2 nc|ENSG00000180638|Q86VL8-2|SLC47A2 nc|ENSG00000180638|Q86VL8-2|SLC47A2 MSMS AL20221201_MKP_PDAC_01 4 553.3204345703125 2 553.316232 1104.61791 NaN NaN NaN NaN NaN NaN NaN 93.002 1 86.827 86.327 87.327 -6.1757 0 0 0 0.3347 1 61528 61528 33.445 0 1 43556 8915 28906 29635 51274 51274 0.06978585165848017 NYANIRFRF 9 Unmodified _NYANIRFRF_ 0 0 0 ENSG00000102043|ENST00000374852|MTMR8;ENST00000461403.1_1_X:63557232-63569902:-|nuORF ENSG00000102043|ENST00000374852|MTMR8 ENSG00000102043|ENST00000374852|MTMR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8805236816406 3 400.880602 1199.61998 0.094082 3.7716E-05 -0.36488 -0.00014627 -0.2708 -0.00010856 400.8803702363084 53.037 0.1608 52.973 52.901 53.061 -0.063423 11 7 2 0 0 0 0.34134 1 28770 28770 15.248 9.3803 1 2025200 43557 2013 28907 29636 51275 51275 0.028150586943183953 NYANSSTLTNN 11 Unmodified _NYANSSTLTNN_ 0 0 0 REV__nc|ENSG00000144847|Q5DX21-3|IGSF11 REV__nc|ENSG00000144847|Q5DX21-3|IGSF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7708740234375 2 599.770374 1197.52619 0.81481 0.0004887 -1.2109 -0.00072625 -0.39607 -0.00023755 599.7701684220197 58.959 0.27439 52.884 52.719 52.993 -6.0745 21 14 2 0 0 0 0.33405 1 37829 37829 24.991 0 1 11400000 + 43558 20741 28908 29637 51276 51276 -0.06466749989272103 NYAPAFTML 9 Oxidation (M) _NYAPAFTM(Oxidation (M))L_ NYAPAFTM(1)L NYAPAFTM(85)L 0 0 1 ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.24609375 2 522.24696 1042.47937 0.25599 0.00013369 -0.7184 -0.00037518 -0.4624 -0.00024149 522.2467654604769 67.14 0.56932 66.658 66.274 66.844 -0.48219 67 26 3 0 0 0 0.0090851 2 36541 36541;36645 85.357 56.87 1 5886200 43559 10120 28909 29638 51277;51278 51277 1643 -0.040172810741296416 NYAPAFTML 9 Oxidation (M) _NYAPAFTM(Oxidation (M))L_ 0 0 1 ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.24696 1042.47937 0.89968 0.00046985 0.60433 0.00031561 1.504 0.00078546 522.2471881060052 66.496 0.12325 66.506 66.417 66.54 0.0095596 -0.099127 0.00097816 NaN 85.357 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1518500 43560 10120 28909 29638 1643 -0.040172810741296416 NYAPAFTML 9 Unmodified _NYAPAFTML_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2496337890625 2 514.249503 1026.48445 0.92684 0.00047662 -1.2442 -0.00063984 -0.31738 -0.00016321 514.2488363862695 88.802 0.43861 82.626 82.392 82.831 -6.1757 55 24 3 0 0 0 0.010818 2 58616 58487;58616 78.149 52.75 1 24244000 43561 10120 28909 29639 51279;51280 51280 -0.027729772114980733 NYAPNPDKHW 10 Unmodified _NYAPNPDKHW_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.291748046875 2 621.288537 1240.56252 0.62279 0.00038693 0.90764 0.00056391 1.5304 0.00095084 621.2888372058194 64.454 0.51262 63.969 63.696 64.208 -0.48512 40 23 2 0 0 0 0.44373 1 35132 35132 19.257 6.2145 1 3014900 43562 9841 28910 29640 51281 51281 -0.048138283018943184 NYAQPENCTTA 11 Unmodified _NYAQPENCTTA_ 0 0 0 REV__ENSG00000087128|ENST00000305363|TMPRSS11E REV__ENSG00000087128|ENST00000305363|TMPRSS11E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.756591796875 2 606.253502 1210.49245 0.17895 0.00010849 0.67857 0.00041138 0.85752 0.00051988 606.2536433437479 77.574 0.3306 77.624 77.418 77.748 0.05011 31 13 3 0 0 0 0.63851 1 42771 42771 9.3831 0.63772 1 6459900 + 43563 17779 28911 29641 51282 51282 -0.10437494752682142 NYAQPENCTTA 11 Unmodified _NYAQPENCTTA_ 0 0 0 REV__ENSG00000087128|ENST00000305363|TMPRSS11E REV__ENSG00000087128|ENST00000305363|TMPRSS11E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.25439453125 2 606.253502 1210.49245 0.31559 0.00019133 0.51863 0.00031442 0.83422 0.00050575 606.2537529635999 78.181 0.35668 78.234 78.063 78.419 0.052452 38 14 3 0 0 0 0.63851 2 43133 43133;43248 9.3831 2.66 1 7371800 + 43564 17779 28911 29641 51283;51284 51283 -0.10437494752682142 NYAQVFNKL 9 Unmodified _NYAQVFNKL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.792724609375 2 548.792924 1095.57129 0.18999 0.00010427 1.2753 0.00069986 1.4653 0.00080413 548.7930113029369 55.055 0.52264 54.577 54.19 54.712 -0.47798 50 25 4 0 0 0 0.0095811 1 29835 29835 81.613 41.656 1 20058000 43565 4807 28912 29642 51285 51285 0.027331453345595946 NYAQVFNKL 9 Unmodified _NYAQVFNKL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.792724609375 2 548.792924 1095.57129 0.31541 0.00017309 0.52767 0.00028958 0.84308 0.00046268 548.7928180079487 54.744 0.28093 54.677 54.523 54.804 -0.066936 36 13 4 0 0 0 0.00856 2 29693 29693;29799 100.37 60.414 1 8772000 43566 4807 28912 29642 51286;51287 51286 0.027331453345595946 NYAQVFNKL 9 Unmodified _NYAQVFNKL_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 548.792924 1095.57129 0.92703 0.00050875 -0.46904 -0.00025741 0.45798 0.00025134 548.7929061021547 60.386 0.58224 54.272 53.964 54.546 -6.1147 -0.23683 -0.00075807 NaN 100.37 70 30 3 NaN NaN NaN NaN 0 NaN NaN 0 65644000 43567 4807 28912 29642 0.027331453345595946 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF nc|ENSG00000153317|Q9ULH1-2|ASAP1 nc|ENSG00000153317|Q9ULH1-2|ASAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.28564453125 2 549.284931 1096.55531 0.25422 0.00013964 4.416 0.0024257 4.6702 0.0025653 549.2866421557472 58.731 0.38525 58.241 57.963 58.348 -0.49079 44 18 3 0 0 0 0.015688 3 31891 31871;31891;31990 67.838 35.533 1 17154000 43568 6259 28913 29643 51288;51289;51290 51289 0.010894390976773138 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF nc|ENSG00000153317|Q9ULH1-2|ASAP1 nc|ENSG00000153317|Q9ULH1-2|ASAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2886352539062 2 549.284931 1096.55531 NaN NaN NaN NaN NaN NaN NaN 58.373 1 58.312 57.812 58.812 -0.060719 0 0 0 0.054801 1 31790 31790 55.503 30.103 1 43569 6259 28913 29643 51291 51291 0.010894390976773138 NYAQVLDKF 9 Unmodified _NYAQVLDKF_ 0 0 0 nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENSG00000153317|ENST00000518721|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF nc|ENSG00000153317|Q9ULH1-2|ASAP1 nc|ENSG00000153317|Q9ULH1-2|ASAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2849731445312 2 549.284931 1096.55531 1.3778 0.00075679 -0.52914 -0.00029065 0.84863 0.00046614 549.2850609867447 64.046 0.57921 57.87 57.719 58.298 -6.1757 68 30 3 0 0 0 0.0061223 3 41561 41424;41561;41709 114.2 74.244 1 69305000 43570 6259 28913 29643 51292;51293;51294 51293 0.010894390976773138 NYARGHYTI 9 Unmodified _NYARGHYTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7723999023438 2 547.772522 1093.53049 -0.17239 -9.4433E-05 -0.31201 -0.00017091 -0.4844 -0.00026534 547.7724213466531 24.632 0.37414 24.632 24.469 24.844 0 52 20 4 0 0 0 0.07087 1 12608 12608 39.95 22.837 1 8413100 43571 3708;4027;7630 28914 29644 51295 51295 -0.012531959850548446 NYARGHYTI 9 Unmodified _NYARGHYTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.5169982910156 3 365.51744 1093.53049 0.15881 5.8047E-05 -0.15398 -5.6283E-05 0.0048256 1.7639E-06 365.5174680075372 24.836 0.23318 24.834 24.735 24.968 -0.0016747 24 9 3 0 0 0 0.39863 1 12697 12697 17.113 12.065 1 10244000 43572 3708;4027;7630 28914 29644 51296 51296 -0.012531959850548446 NYARGHYTI 9 Unmodified _NYARGHYTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2742309570312 2 547.772522 1093.53049 0.077944 4.2695E-05 0.92887 0.00050881 1.0068 0.00055151 547.7727004544686 24.856 0.16272 24.854 24.735 24.898 -0.0016766 11 6 2 0 0 0 0.078314 1 12714 12714 38.176 22.026 1 3703700 43573 3708;4027;7630 28914 29644 51297 51297 -0.012531959850548446 NYARGHYTI 9 Unmodified _NYARGHYTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5176696777344 3 365.51744 1093.53049 1.1578 0.00042319 -0.82834 -0.00030277 0.32945 0.00012042 365.51729110746254 27.033 0.46336 23.997 23.755 24.219 -3.0365 114 23 7 0 0 0 0.28047 3 15012 14891;15012;15085 17.113 12.584 1 350790000 43574 3708;4027;7630 28914 29644 51298;51299;51300 51299 -0.012531959850548446 NYASTFTW 8 Unmodified _NYASTFTW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2229919433594 2 495.2218 988.429047 0.72493 0.000359 4.2281 0.0020939 4.9531 0.0024529 495.2232763370519 67.816 0.26974 67.333 67.142 67.411 -0.48218 19 11 2 0 0 0 0.74163 1 37074 37074 13.508 5.5977 1 857350 43575 741 28915 29645 51301 51301 -0.06563067407603285 NYASTFTWW 9 Unmodified _NYASTFTWW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.2616577148438 2 588.261456 1174.50836 1.0318 0.00060699 -0.29702 -0.00017472 0.73482 0.00043226 588.2612090398064 91.192 0.49463 91.229 91.012 91.506 0.036499 56 18 4 0 0 0 0.087258 2 50671 50671;50773 36.044 21.206 1 70158000 43576 741 28916 29646 51302;51303 51302 -0.07191420453455066 NYASTFTWW 9 Unmodified _NYASTFTWW_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1;nc|ENSG00000052802|Q15800-2|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2625122070312 2 588.261456 1174.50836 0.27616 0.00016245 0.40242 0.00023673 0.67858 0.00039918 588.261620113608 99.722 0.21946 93.546 93.432 93.652 -6.1757 41 14 4 0 0 0 0.2143 1 66452 66452 21.747 11.673 1 508850000 43577 741 28916 29646 51304 51304 -0.07191420453455066 NYATRIVTL 9 Unmodified _NYATRIVTL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.80078125 2 525.800749 1049.58694 -0.013933 -7.3262E-06 -0.34972 -0.00018388 -0.36366 -0.00019121 525.8005211725932 51.74 0.35825 51.307 51.136 51.494 -0.43367 57 18 4 0 0 0 0.0098373 2 27878 27878;27988 96.936 55.096 1 53600000 43578 3160 28917 29647 51305;51306 51305 0.06413431851638052 NYATRIVTL 9 Unmodified _NYATRIVTL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8005981445312 2 525.800749 1049.58694 -0.27441 -0.00014429 0.53038 0.00027887 0.25597 0.00013459 525.8006274601711 51.39 0.37257 51.336 51.067 51.44 -0.053871 42 18 4 0 0 0 0.0098373 1 27789 27789 96.936 60.891 1 10509000 43579 3160 28917 29647 51307 51307 0.06413431851638052 NYAWVYYHL 9 Unmodified _NYAWVYYHL_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.793212890625 2 614.792924 1227.57129 0.76912 0.00047285 -0.23729 -0.00014589 0.53183 0.00032696 614.792783548268 72.76 0.74071 72.284 72.063 72.804 -0.47588 55 33 2 0 0 0 0.023761 3 39773 39773;39869;39969 59.795 37.059 1 168330000 43580 3479 28918 29648 51308;51309;51310 51308 -0.03338854665435065 NYAWVYYHL 9 Unmodified _NYAWVYYHL_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.7887573242188 2 614.792924 1227.57129 0.16789 0.00010322 0.10076 6.1948E-05 0.26865 0.00016517 614.7929652176546 85.462 2.5246 79.287 77.758 80.283 -6.1757 282 146 2 0 0 0 0.013419 13 55315 55315;55436;55572;55707;55840;55972;56103;56229;56360;56499;56630;56761;56892 70.865 47.778 1 1889199999.9999998 43581 3479 28918 29648 51311;51312;51313;51314;51315;51316;51317;51318;51319;51320;51321;51322;51323 51311 -0.03338854665435065 NYAWVYYHM 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ NYAWVYYHM(1) NYAWVYYHM(71) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.2701416015625 2 631.768591 1261.52263 0.070774 4.4713E-05 -0.45754 -0.00028906 -0.38677 -0.00024435 631.7684248363166 53.2 0.28799 52.749 52.535 52.823 -0.45173 56 14 5 0 0 0 0.013419 1 28718 28718 70.865 62.709 1 61103000 43582 3480;6214 28919 29649 51324 51324 618 -0.09767091296862418 NYAWVYYHM 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ NYAWVYYHM(1) NYAWVYYHM(78) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7693481445312 2 631.768591 1261.52263 0.12326 7.7875E-05 0.63235 0.0003995 0.75561 0.00047737 631.7692088544958 53.393 0.36642 52.941 52.742 53.109 -0.45173 59 17 5 0 0 0 0.010712 2 28929 28829;28929 78.445 61.332 1 51235000 43583 3480;6214 28919 29649 51325;51326 51326 618 -0.09767091296862418 NYAWVYYHM 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ NYAWVYYHM(1) NYAWVYYHM(71) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.7691040039062 2 631.768591 1261.52263 0.55784 0.00035242 -0.49876 -0.0003151 0.059082 3.7326E-05 631.7683877606221 52.835 0.26002 52.771 52.603 52.863 -0.063423 55 12 5 0 0 0 0.013419 2 28581 28581;28684 70.865 61.481 1 125810000 43584 3480;6214 28919 29649 51327;51328 51327 618 -0.09767091296862418 NYAWVYYHM 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ NYAWVYYHM(1) NYAWVYYHM(78) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.768798828125 2 631.768591 1261.52263 0.32002 0.00020218 0.058733 3.7106E-05 0.37875 0.00023928 631.7687579957717 53.076 0.31401 53.012 52.863 53.177 -0.063423 63 15 6 0 0 0 0.010712 1 28785 28785 78.445 65.913 1 96935000 43585 3480;6214 28919 29649 51329 51329 618 -0.09767091296862418 NYAWVYYHM 9 Oxidation (M) _NYAWVYYHM(Oxidation (M))_ NYAWVYYHM(1) NYAWVYYHM(78) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7693481445312 2 631.768591 1261.52263 1.286 0.00081247 -0.086666 -5.4753E-05 1.1994 0.00075772 631.7685481139285 58.818 0.71106 52.744 52.319 53.03 -6.0745 142 39 4 0 0 0 0.010712 4 37859 37463;37594;37731;37859 78.445 58.333 1 213230000 43586 3480;6214 28919 29649 51330;51331;51332;51333 51333 618 -0.09767091296862418 NYAWVYYHM 9 Unmodified _NYAWVYYHM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.77197265625 2 623.771134 1245.52771 -0.020616 -1.286E-05 0.2127 0.00013268 0.19209 0.00011982 623.7714151774541 65.75 0.29869 65.265 65.061 65.36 -0.48428 35 12 4 0 0 0 0.05447 1 35845 35845 59.795 42.682 1 8802500 43587 3480;6214 28919 29650 51334 51334 -0.0852278743423085 NYAWVYYHM 9 Unmodified _NYAWVYYHM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.7716064453125 2 623.771134 1245.52771 0.8446 0.00052684 -1.2143 -0.00075743 -0.36968 -0.00023059 623.7704522758667 65.251 0.37443 65.251 65.056 65.431 7.6294E-06 52 17 4 0 0 0 0.05447 2 35709 35709;35811 59.795 42.682 1 64581000 43588 3480;6214 28919 29650 51335;51336 51335 -0.0852278743423085 NYAWVYYHM 9 Unmodified _NYAWVYYHM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2735595703125 2 623.771134 1245.52771 0.82466 0.0005144 -0.78528 -0.00048984 0.03938 2.4564E-05 623.7701979989353 72.046 0.77384 65.87 65.367 66.141 -6.1757 115 41 4 0 0 0 0.039985 3 47019 47019;47097;47226 67.035 44.299 1 102570000 43589 3480;6214 28919 29650 51337;51338;51339 51337 -0.0852278743423085 NYAWVYYHM 9 Unmodified _NYAWVYYHM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000119922|ENST00000371826|IFIT2;ENSG00000152778|ENST00000371795|IFIT5 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.7728881835938 2 623.771134 1245.52771 0.65234 0.00040691 -0.23342 -0.0001456 0.41892 0.00026131 623.7710623865227 72.862 1.2221 66.686 66.104 67.326 -6.1757 202 61 4 0 0 0 0.039985 7 47911 47338;47447;47556;47674;47789;47911;48032 67.035 42.682 1 114130000 43590 3480;6214 28919 29650 51340;51341;51342;51343;51344;51345;51346 51345 -0.0852278743423085 NYCESRYHF 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))ESRYHF_ NYC(1)ESRYHF NYC(80)ESRYHF 0 1 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.7650146484375 2 638.264204 1274.51386 -0.62535 -0.00039914 -0.038877 -2.4814E-05 -0.66423 -0.00042395 638.2644843772282 29.899 0.1784 29.899 29.815 29.994 0 23 9 3 0 0 0 0.010301 1 15504 15504 79.596 67.956 1 3513000 43591 10665 28920 29651 51347 51347 947 -0.11242064933321672 NYCESRYHF 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))ESRYHF_ NYC(1)ESRYHF NYC(180)ESRYHF 0 1 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.2640380859375 2 638.264204 1274.51386 0.42891 0.00027376 -0.35592 -0.00022717 0.072984 4.6583E-05 638.2642000851687 32.729 0.38522 28.873 28.715 29.1 -3.8562 68 20 4 0 0 0 9.232E-11 2 18635 18635;18757 176.84 142.44 1 69201000 43592 10665 28920 29651 51348;51349 51348 947 -0.11242064933321672 NYCESRYHF 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))ESRYHF_ NYC(1)ESRYHF NYC(42)ESRYHF 0 1 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8456115722656 3 425.845228 1274.51386 0.80384 0.00034231 -0.068864 -2.9325E-05 0.73497 0.00031299 425.84534455640676 32.748 0.47772 28.892 28.652 29.129 -3.8562 92 25 5 0 0 0 0.062454 1 18722 18722 41.956 30.461 1 284320000 43593 10665 28920 29651 51350 51350 947 -0.11242064933321672 NYCESRYHF 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))ESRYHF_ 0 1 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 638.264204 1274.51386 0.39165 0.00024998 1.9528 0.0012464 2.3444 0.0014964 638.2651516118685 29.972 0.12744 29.891 29.792 29.92 -0.080429 -0.0036946 0.0022921 NaN 79.596 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 754460 43594 10665 28920 29651 947 -0.11242064933321672 NYCNLFNYI 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))NLFNYI_ NYC(1)NLFNYI NYC(51)NLFNYI 0 1 0 ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7748413085938 2 610.773874 1219.53319 0.88385 0.00053983 -0.36652 -0.00022386 0.51733 0.00031597 610.7738210306619 99.268 0.25724 93.092 92.957 93.214 -6.1757 53 15 5 0 0 0 0.038285 1 66002 66002 50.855 40.781 1 1247100000 43595 1759 28921 29652 51351 51351 167 -0.06779108642399478 NYCRIFTEL 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))RIFTEL_ NYC(1)RIFTEL NYC(44)RIFTEL 0 1 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS AL20221201_MKP_PDAC_01 4 608.2947998046875 2 608.294973 1214.57539 NaN NaN NaN NaN NaN NaN NaN 73.39 1 67.214 66.714 67.714 -6.1757 0 0 0 0.098496 1 47994 47994 43.772 23.358 1 43596 874 28922 29653 51352 51352 75 -0.02331133233997207 NYCRQVQQL 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))RQVQQL_ NYC(1)RQVQQL NYC(130)RQVQQL 0 1 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7951049804688 2 604.795672 1207.57679 0.3485 0.00021077 0.049412 2.9884E-05 0.39791 0.00024066 604.7958864120601 32.622 0.37955 28.766 28.565 28.945 -3.8562 40 19 3 0 0 0 0.0026776 2 18560 18560;18691 128.37 101.48 1 18036000 43597 9710;14136 28923 29654 51353;51354 51353 888 -0.018694991452775866 NYCRQVQQL 9 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))RQVQQL_ 0 1 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L;ENST00000483767.5_1_1:880076-882054:-|nuORF ENSG00000188976|ENST00000327044|NOC2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 604.795672 1207.57679 -0.6774 -0.00040969 1.6457 0.00099531 0.9683 0.00058563 605.2985331496199 28.953 0.099646 28.953 28.923 29.022 0 0.093811 0.0017511 NaN 128.37 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 642220 43598 9710;14136 28923 29654 888 -0.018694991452775866 NYCRSGKGPI 10 Unmodified _NYCRSGKGPI_ 0 0 0 ENSG00000163114|ENST00000295266|PDHA2 ENSG00000163114|ENST00000295266|PDHA2 ENSG00000163114|ENST00000295266|PDHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.773681640625 2 547.774208 1093.53386 0.44314 0.00024274 -0.72832 -0.00039895 -0.28518 -0.00015621 547.7741380473917 27.045 0.36502 24.008 23.854 24.219 -3.0365 63 18 5 0 0 0 0.29752 1 15038 15038 27.629 0.74515 1 118020000 43599 6953 28924 29655 51355 51355 -0.009162692026848163 NYCSLCIRKF 10 2 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))IRKF_ NYC(1)SLC(1)IRKF NYC(44)SLC(44)IRKF 0 2 0 ENSG00000070950|ENST00000264926|RAD18;ENST00000469793.1_1_3:8988887-9005069:-|nuORF ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2223510742188 3 454.22153 1359.64276 1.7602 0.00079952 -0.55332 -0.00025133 1.2069 0.00054819 454.221741083547 47.655 0.38359 42.422 42.197 42.58 -5.2339 66 22 5 0 0 0 0.11322 2 29508 29508;29644 44.392 34.848 1 32821000 43600 1046 28925 29656 51356;51357 51356 92;93 -0.02267426294724828 NYCSLCIRKF 10 2 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))IRKF_ NYC(1)SLC(1)IRKF NYC(83)SLC(83)IRKF 0 2 0 ENSG00000070950|ENST00000264926|RAD18;ENST00000469793.1_1_3:8988887-9005069:-|nuORF ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.8304443359375 2 680.828657 1359.64276 1.9344 0.001317 -0.35205 -0.00023969 1.5823 0.0010773 680.8282183462388 47.626 0.30228 42.393 42.212 42.515 -5.2339 25 17 2 0 0 0 0.012329 1 29586 29586 83.429 73.355 1 9572800 43601 1046 28925 29656 51358 51358 92;93 -0.02267426294724828 NYCSLCIRKF 10 2 Carbamidomethyl (C) _NYC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))IRKF_ 0 2 0 ENSG00000070950|ENST00000264926|RAD18;ENST00000469793.1_1_3:8988887-9005069:-|nuORF ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 680.828657 1359.64276 -0.010469 -7.1273E-06 0.42717 0.00029083 0.4167 0.0002837 680.8293008668721 42.179 0.23261 42.179 42.086 42.318 0 -0.10667 0.0007371 NaN 83.429 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4145100 43602 1046 28925 29656 92;93 -0.02267426294724828 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2985229492188 2 532.298373 1062.58219 -0.34297 -0.00018256 0.26767 0.00014248 -0.075295 -4.0079E-05 532.2983475909591 33.921 0.20485 33.921 33.804 34.009 0 23 9 3 0 0 0 0.0087807 1 17823 17823 106.94 60.919 1 5245500 43603 5299 28926 29657 51359 51359 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 355.2013854980469 3 355.201341 1062.58219 -0.57764 -0.00020518 0.35851 0.00012734 -0.21913 -7.7836E-05 355.2014770249584 33.902 0.37722 33.902 33.667 34.044 0 44 18 4 0 0 0 0.25681 1 17828 17828 13.615 7.883 1 13547000 43604 5299 28926 29657 51360 51360 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2987670898438 2 532.298373 1062.58219 -0.31713 -0.00016881 1.5199 0.00080903 1.2027 0.00064022 532.2994034299803 34.078 0.17396 33.887 33.77 33.944 -0.19131 11 6 2 0 0 0 0.047788 1 17793 17793 45.7 25.246 1 1317200 43605 5299 28926 29657 51361 51361 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.2020874023438 3 355.201341 1062.58219 1.7381 0.00061738 0.71113 0.00025259 2.4492 0.00086997 355.20152182983384 38.034 0.43054 33.665 33.364 33.795 -4.3689 46 25 2 0 0 0 0.25681 1 22314 22314 13.615 3.5409 1 44386000 43606 5299 28926 29657 51362 51362 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.30224609375 2 532.298373 1062.58219 1.0311 0.00054884 3.8813 0.002066 4.9124 0.0026149 532.3005054909408 37.982 0.27753 33.613 33.456 33.733 -4.3689 29 16 2 0 0 0 0.062454 1 22331 22331 41.956 7.8531 1 13423000 43607 5299 28926 29657 51363 51363 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 355.201341 1062.58219 -0.28714 -0.00010199 1.4496 0.00051489 1.1624 0.0004129 355.20184168857725 34.052 0.2028 33.861 33.77 33.972 -0.19132 0.047329 0.00072611 NaN 13.615 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2392400 43608 5299 28926 29657 0.05340547708851773 NYDAALRKI 9 Unmodified _NYDAALRKI_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 355.201341 1062.58219 0.0043528 1.5461E-06 0.46281 0.00016439 0.46716 0.00016594 355.2012769320106 33.798 0.16077 33.827 33.72 33.881 0.028934 0.013392 -0.00032539 NaN 13.615 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 716600 43609 5299 28926 29657 0.05340547708851773 NYDACLQHL 9 Carbamidomethyl (C) _NYDAC(Carbamidomethyl (C))LQHL_ NYDAC(1)LQHL NYDAC(92)LQHL 0 1 0 nc|ENSG00000182973|Q9H9A5-4|CNOT10;nc|ENSG00000182973|Q9H9A5-3|CNOT10;nc|ENSG00000182973|Q9H9A5-2|CNOT10;ENSG00000182973|ENST00000328834|CNOT10;nc|ENSG00000182973|Q9H9A5-6|CNOT10 nc|ENSG00000182973|Q9H9A5-4|CNOT10 nc|ENSG00000182973|Q9H9A5-4|CNOT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2562866210938 2 567.255848 1132.49714 1.3971 0.00079249 -1.6926 -0.00096012 -0.2955 -0.00016763 567.2553112399793 47.858 0.38842 42.624 42.42 42.808 -5.2339 52 23 3 0 0 0 0.0082661 2 29814 29672;29814 107.19 49.465 1 41122000 43610 9105 28927 29658 51364;51365 51365 852 -0.06380565819267758 NYDEALRLL 9 Unmodified _NYDEALRLL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7958984375 2 553.795663 1105.57677 0.64458 0.00035697 1.8098 0.0010022 2.4543 0.0013592 554.2984199430509 67.556 0.42366 67.556 67.342 67.766 0 73 19 5 0 0 0 0.012668 1 37624 37624 72.968 23.035 1 32573000 43611 1197 28928 29659 51366 51366 0.028208241263882883 NYDEALRLL 9 Unmodified _NYDEALRLL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.795166015625 2 553.795663 1105.57677 0.84122 0.00046587 -0.5498 -0.00030448 0.29142 0.00016139 553.7946679157008 67.999 0.38417 67.517 67.275 67.659 -0.48219 60 17 4 0 0 0 0.05483 1 37165 37165 43.772 9.3707 1 21054000 43612 1197 28928 29659 51367 51367 0.028208241263882883 NYDEALRLL 9 Unmodified _NYDEALRLL_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.2695922851562 2 553.795663 1105.57677 0.99412 0.00055054 0.17456 9.6671E-05 1.1687 0.00064721 553.7954508154031 74.901 0.56454 68.726 68.416 68.981 -6.1757 37 29 2 0 0 0 0.20256 1 48975 48975 17.113 9.2027 1 9495600 43613 1197 28928 29659 51368 51368 0.028208241263882883 NYDETLSTL 9 Unmodified _NYDETLSTL_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000054523|O60333-3|KIF1B;ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000054523|O60333-3|KIF1B;ENSG00000197892|ENST00000524189|KIF13B;nc|ENSG00000130294|Q12756|KIF1A nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7527465820312 2 528.248212 1054.48187 0.64117 0.00033869 1.9373 0.0010234 2.5784 0.0013621 528.7517021250216 53.145 0.30051 53.145 53.003 53.304 0 30 13 3 0 0 0 0.14 1 29435 29435 29.082 0 1 4678500 43614 760;16032;10018;4197 28929 29660 51369 51369 -0.04319154135464487 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(74) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.24072265625 2 555.239667 1108.46478 0.49857 0.00027683 0.30549 0.00016962 0.80406 0.00044645 555.2403516483906 48.124 0.27305 48.124 47.978 48.251 0 25 13 2 0 0 0 0.012158 1 26375 26375 74.396 48.128 1 11291000 43615 441 28930 29661 51370 51370 54 -0.0851135322227492 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(44) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.244384765625 2 555.239667 1108.46478 -0.083557 -4.6394E-05 3.2827 0.0018227 3.1992 0.0017763 555.2416997592802 48.494 0.40331 48.494 48.272 48.675 0 40 19 3 0 0 0 0.052168 1 26666 26666 44.407 19.008 1 6911700 43616 441 28930 29661 51371 51371 54 -0.0851135322227492 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(64) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.23974609375 2 555.239667 1108.46478 0.60409 0.00033541 -0.99492 -0.00055242 -0.39083 -0.000217 555.2392051037722 48.519 0.23532 48.148 47.965 48.2 -0.37172 18 11 2 0 0 0 0.019979 1 26024 26024 63.563 43.148 1 5144200 43617 441 28930 29661 51372 51372 54 -0.0851135322227492 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(64) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2425537109375 2 555.239667 1108.46478 0.50919 0.00028272 1.7628 0.00097876 2.272 0.0012615 555.2413535981498 48.88 0.26548 48.508 48.388 48.654 -0.37172 35 13 3 0 0 0 0.019979 1 26271 26271 63.563 31.257 1 4120600 43618 441 28930 29661 51373 51373 54 -0.0851135322227492 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(64) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2396850585938 2 555.239667 1108.46478 0.79354 0.00044061 0.016889 9.3776E-06 0.81043 0.00044998 555.2399912920108 54.661 0.29097 48.796 48.668 48.959 -5.8653 23 17 2 0 0 0 0.019303 1 34756 34756 64.236 34.012 1 16965000 43619 441 28930 29661 51374 51374 54 -0.0851135322227492 NYDFGPIHM 9 Oxidation (M) _NYDFGPIHM(Oxidation (M))_ NYDFGPIHM(1) NYDFGPIHM(54) 0 0 1 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MSMS AL20221201_MKP_PDAC_01 4 555.2404174804688 2 555.239667 1108.46478 NaN NaN NaN NaN NaN NaN NaN 55.037 1 49.116 48.616 49.616 -5.9211 0 0 0 0.060495 1 34983 34983 53.576 34.137 1 43620 441 28930 29661 51375 51375 54 -0.0851135322227492 NYDFGPIHM 9 Unmodified _NYDFGPIHM_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2423706054688 2 547.242209 1092.46987 0.7677 0.00042012 -0.40739 -0.00022294 0.36031 0.00019718 547.2419821857985 72.919 0.64902 66.744 66.43 67.079 -6.1757 53 32 2 0 0 0 0.023164 3 47714 47595;47714;47833 60.39 24.345 1 24517000 43621 441 28930 29662 51376;51377;51378 51377 -0.07267049359643352 NYDFVLRWF 9 Unmodified _NYDFVLRWF_ 0 0 0 REV__ENSG00000196090|ENST00000373187|PTPRT REV__ENSG00000196090|ENST00000373187|PTPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.31396484375 2 630.314023 1258.61349 1.1548 0.00072789 -0.73214 -0.00046148 0.42266 0.00026641 630.3131870158585 95.846 0.18347 89.671 89.601 89.785 -6.1757 15 10 2 0 0 0 0.12424 1 63505 63505 30.637 0.79596 1 6724000 + 43622 23785 28931 29663 51379 51379 -0.005468792570354708 NYDGIIDLGF 10 Unmodified _NYDGIIDLGF_ 0 0 0 REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF REV__ENST00000452143.5_1_1:62902154-62905498:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7747802734375 2 563.774396 1125.53424 0.10495 5.917E-05 1.8655 0.0010517 1.9704 0.0011109 563.7756542373148 51.637 0.3361 51.203 50.988 51.325 -0.43367 37 17 3 0 0 0 0.33553 1 27906 27906 25.399 1.3787 1 9737200 + 43623 27217 28932 29664 51380 51380 -0.023505710018298487 NYDIAIAEL 9 Unmodified _NYDIAIAEL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2647705078125 2 511.263665 1020.51278 0.29383 0.00015022 1.0416 0.00053256 1.3355 0.00068278 511.2641913229548 76.584 0.36439 76.584 76.37 76.734 0 38 14 3 0 0 0 0.028475 2 42528 42528;42629 56.177 27.69 1 2763200 43624 5031 28933 29665 51381;51382 51381 0.003340439694284214 NYDIAIAEL 9 Unmodified _NYDIAIAEL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MSMS AL20221201_MKP_PDAC_01 4 511.2653503417969 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 84.351 1 78.175 77.675 78.675 -6.1757 0 0 0 0.068038 1 55488 55488 51.63 22.548 1 43625 5031 28933 29665 51383 51383 0.003340439694284214 NYDKFLVRWFD 11 Unmodified _NYDKFLVRWFD_ 0 0 0 REV__ENSG00000160224|ENST00000291582|AIRE REV__ENSG00000160224|ENST00000291582|AIRE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 751.870849609375 2 751.874976 1501.7354 0.25416 0.0001911 -3.2424 -0.0024379 -2.9882 -0.0022468 751.872187621166 62.916 0.15582 62.43 62.346 62.501 -0.48617 12 7 2 0 0 0 0.69708 1 34323 34323 4.5289 1.5336 1 2448500 + 43626 21526 28934 29666 51384 51384 0.004601180346526235 NYDKVEKLF 9 Unmodified _NYDKVEKLF_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.305908203125 2 578.305864 1154.59717 -0.20114 -0.00011632 0.19694 0.00011389 -0.0041999 -2.4288E-06 578.3060303750557 44.798 0.20288 44.798 44.664 44.867 0 17 10 2 0 0 0 0.0091809 1 24372 24372 84.522 26.8 1 16552000 43627 8565 28935 29667 51385 51385 0.02605994786199517 NYDKVEKLF 9 Unmodified _NYDKVEKLF_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8727416992188 3 385.873001 1154.59717 NaN NaN NaN NaN NaN NaN NaN 44.732 1 44.732 44.232 45.232 0 0 0 0 0.25233 1 24355 24355 26.021 11.615 1 43628 8565 28935 29667 51386 51386 0.02605994786199517 NYDKVEKLF 9 Unmodified _NYDKVEKLF_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8723754882812 3 385.873001 1154.59717 -0.1003 -3.8702E-05 0.19287 7.4424E-05 0.092574 3.5722E-05 385.8728986065782 45.012 0.15651 44.688 44.562 44.719 -0.32425 12 7 2 0 0 0 0.094149 1 24016 24016 26.021 11.615 1 24768000 43629 8565 28935 29667 51387 51387 0.02605994786199517 NYDKVEKLF 9 Unmodified _NYDKVEKLF_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3065795898438 2 578.305864 1154.59717 NaN NaN NaN NaN NaN NaN NaN 45.009 1 44.685 44.185 45.185 -0.32425 0 0 0 0.0076565 1 24026 24026 97.741 36.384 1 43630 8565 28935 29667 51388 51388 0.02605994786199517 NYDLALKYF 9 Unmodified _NYDLALKYF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7955932617188 2 573.795132 1145.57571 0.77439 0.00044434 0.058942 3.382E-05 0.83334 0.00047816 573.7948972598605 72.493 0.41636 72.017 71.813 72.23 -0.4761 57 19 4 0 0 0 0.013041 2 39618 39618;39715 71.922 36.99 1 23791000 43631 1056 28936 29668 51389;51390 51389 0.008746097574658052 NYDLALKYF 9 Unmodified _NYDLALKYF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7952880859375 2 573.795132 1145.57571 0.48702 0.00027945 0.45755 0.00026254 0.94458 0.00054199 573.7951439281248 71.973 0.32018 72.012 71.809 72.129 0.039024 45 15 4 0 0 0 0.011671 2 39575 39575;39680 75.761 33.805 1 13153000 43632 1056 28936 29668 51391;51392 51391 0.008746097574658052 NYDLALKYF 9 Unmodified _NYDLALKYF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7960205078125 2 573.795132 1145.57571 1.0469 0.00060073 -0.25643 -0.00014714 0.79052 0.0004536 573.7950935344334 83.582 1.3768 77.406 76.731 78.107 -6.1757 156 73 3 0 0 0 0.00010239 5 54844 54721;54844;54974;55102;55253 152.89 112.93 1 46222000 43633 1056 28936 29668 51393;51394;51395;51396;51397 51394 0.008746097574658052 NYDLALKYF 9 Unmodified _NYDLALKYF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 573.795132 1145.57571 0.29274 0.00016797 0.37297 0.00021401 0.66571 0.00038198 573.7947450071779 72.053 0.27502 72.053 71.944 72.219 0 0.025357 0.00011087 NaN 75.761 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 550500 43634 1056 28936 29668 0.008746097574658052 NYDLVYLH 8 Unmodified _NYDLVYLH_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD;nc|ENSG00000169344|P07911-2|UMOD;nc|ENSG00000169344|P07911-4|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.7044067382812 2 518.758549 1035.50255 0.67864 0.00035205 -0.50467 -0.0002618 0.17398 9.0251E-05 518.7586906762598 44.475 0.30544 39.623 39.425 39.73 -4.852 37 21 2 0 0 0 8.7369 1 27152 27152 18.135 2.2878 1 11105000 43635 7866 28937 29669 51398 51398 -0.013785189651343899 NYDMLEHGACN 11 Unmodified _NYDMLEHGACN_ 0 0 0 REV__nc|ENSG00000188316|A6NNW6-4|ENO4 REV__nc|ENSG00000188316|A6NNW6-4|ENO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7454223632812 2 633.74753 1265.48051 -0.72891 -0.00046194 -1.7807 -0.0011285 -2.5096 -0.0015904 633.7466159707332 36.665 0.13197 36.415 36.358 36.49 -0.2497 12 5 3 0 0 0 0.70435 1 19268 19268 7.609 4.0125 1 2477800 + 43636 23705 28938 29670 51399 51399 -0.1416143476749312 NYDNLLSQF 9 Unmodified _NYDNLLSQF_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7659912109375 2 557.264196 1112.51384 0.43124 0.00024031 0.86007 0.00047929 1.2913 0.0007196 557.2650203707767 78.716 0.27632 78.716 78.553 78.829 0 30 12 3 0 0 0 0.43463 1 43715 43715 10.824 5.0921 1 1070200 43637 5293 28939 29671 51400 51400 -0.03791741661666492 NYDNLLSQF 9 Unmodified _NYDNLLSQF_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2647705078125 2 557.264196 1112.51384 0.85693 0.00047754 1.165 0.0006492 2.0219 0.0011267 557.2648585218034 79.27 0.35184 78.784 78.619 78.971 -0.48596 36 14 3 0 0 0 0.19127 1 43402 43402 24.021 5.8742 1 2014400 43638 5293 28939 29671 51401 51401 -0.03791741661666492 NYDRFHYLL 9 Unmodified _NYDRFHYLL_ 0 0 0 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 ENSG00000128268|ENST00000341184|MGAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2083740234375 3 414.208495 1239.60366 0.11738 4.8621E-05 -0.24428 -0.00010118 -0.1269 -5.2561E-05 414.2083848108107 54.816 0.23888 54.349 54.201 54.44 -0.46664 31 11 4 0 0 0 0.2324 1 29693 29693 20.415 14.223 1 7036400 43639 4054 28940 29672 51402 51402 -0.006560672624345898 NYDTTESKL 9 Unmodified _NYDTTESKL_ 0 0 0 nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7535400390625 2 535.753661 1069.49277 -0.2022 -0.00010833 0.38032 0.00020376 0.17811 9.5425E-05 535.753721459937 24.739 0.21298 24.739 24.61 24.823 0 23 12 3 0 0 0 0.42049 1 12673 12673 11.495 4.2055 1 998240 43640 2241 28941 29673 51403 51403 -0.03919751761191037 NYDTTESKL 9 Unmodified _NYDTTESKL_ 0 0 0 nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 nc|ENSG00000104852|P08621-3|SNRNP70 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7538452148438 2 535.753661 1069.49277 0.43529 0.00023321 0.0097035 5.1987E-06 0.445 0.00023841 535.7537591269379 28.171 0.16245 25.023 24.896 25.059 -3.1482 12 8 2 0 0 0 0.037253 1 15690 15690 51.415 17.014 1 3287200 43641 2241 28941 29673 51404 51404 -0.03919751761191037 NYDVLANEI 9 Unmodified _NYDVLANEI_ 0 0 0 ENSG00000172766|ENST00000379406|NAA16;ENST00000477452.1_1_13:41948000-41949735:+|nuORF;ENST00000469708.1_1_13:41948855-41949735:+|nuORF ENSG00000172766|ENST00000379406|NAA16 ENSG00000172766|ENST00000379406|NAA16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.759033203125 2 525.758746 1049.50294 0.45431 0.00023886 -1.2259 -0.00064455 -0.77164 -0.00040569 525.7580198018287 63.131 0.32955 63.131 62.942 63.272 0 28 13 3 0 0 0 0.28023 1 35214 35214 18.146 6.5061 1 1717100 43642 8253 28942 29674 51405 51405 -0.019831440359666885 NYDVPEKWA 9 Unmodified _NYDVPEKWA_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.30908203125 2 561.266739 1120.51892 0.19315 0.00010841 -0.26483 -0.00014864 -0.071675 -4.0229E-05 561.2669790797995 54.59 0.19362 54.123 54.007 54.201 -0.46664 16 9 2 0 0 0 0.20554 1 29534 29534 9.3831 3.6513 1 1718400 43643 4591;967 28943 29675 51406 51406 -0.03651437799021551 NYDYIWDF 8 Unmodified _NYDYIWDF_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1;nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000131480|O75106-2|AOC2 ENSG00000002726|ENST00000360937|AOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2396240234375 2 568.24019 1134.46583 NaN NaN NaN NaN NaN NaN NaN 88.02 1 88.02 87.52 88.52 0 0 0 0 0.97444 1 48728 48728 0.79363 0 1 43644 263;4332 28944 29676 51407 51407 -0.09602815581729374 NYEAPKYH 8 Unmodified _NYEAPKYH_ 0 0 0 ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.29345703125 2 511.240524 1020.46649 0.90284 0.00046157 0.81267 0.00041547 1.7155 0.00087704 511.2409927253994 42.604 0.39497 37.919 37.747 38.142 -4.6846 43 25 2 0 0 0 8.7369 1 25712 25712 2.5775 0 1 15021000 43645 5843 28945 29677 51408 51408 -0.04291976142008025 NYEDVATFL 9 Unmodified _NYEDVATFL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2537841796875 2 536.253297 1070.49204 0.27216 0.00014595 0.32083 0.00017204 0.59299 0.00031799 536.2533311772476 75.795 0.26389 75.795 75.672 75.936 0 21 11 2 0 0 0 0.34999 1 42140 42140 14.838 6.245 1 1081300 43646 5575 28946 29678 51409 51409 -0.04038546410242816 NYEDYFPEI 9 Unmodified _NYEDYFPEI_ 0 0 0 nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2560424804688 2 595.256037 1188.49752 NaN NaN NaN NaN NaN NaN NaN 78.833 1 78.833 78.333 79.333 0 0 0 0 0.77016 1 43799 43799 10.824 6.0679 1 43647 9351 28947 29679 51410 51410 -0.08918867618422155 NYEDYFPEI 9 Unmodified _NYEDYFPEI_ 0 0 0 nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.254638671875 2 595.256037 1188.49752 0.79949 0.0004759 -0.12052 -7.1741E-05 0.67897 0.00040416 595.2556863559793 86.815 0.27035 80.64 80.588 80.858 -6.1757 18 14 2 0 0 0 0.024189 1 57236 57236 74.929 48.045 1 14721000 43648 9351 28947 29679 51411 51411 -0.08918867618422155 NYEEGDEYF 9 Unmodified _NYEEGDEYF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2227172851562 2 583.219651 1164.42475 NaN NaN NaN NaN NaN NaN NaN 84.148 1 83.648 83.148 84.148 -0.49961 0 0 0 0.85261 1 46052 46052 2.3027 1.5091 1 43649 5210 28948 29680 51412 51412 -0.15088621411837266 NYENKQYLF 9 Unmodified _NYENKQYLF_ 0 0 0 nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251;ENST00000535257.1_1_12:122391860-122397069:+|nuORF nc|ENSG00000158023|Q8TBY9-2|CFAP251 nc|ENSG00000158023|Q8TBY9-2|CFAP251 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.793701171875 2 609.793121 1217.57169 0.61925 0.00037762 -0.25636 -0.00015633 0.36289 0.00022129 609.7933182345906 47.734 0.35485 47.734 47.623 47.978 0 19 16 2 0 0 0 0.047788 1 26158 26158 45.7 21.679 1 1346900 43650 6561 28949 29681 51413 51413 -0.02839479736235262 NYFAYVQMF 9 Oxidation (M) _NYFAYVQM(Oxidation (M))F_ NYFAYVQM(1)F NYFAYVQM(67)F 0 0 1 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7649536132812 2 599.765517 1197.51648 0.13675 8.2016E-05 -0.43704 -0.00026212 -0.3003 -0.00018011 599.7651899516252 78.086 0.21426 78.138 77.987 78.202 0.052452 18 8 3 0 0 0 0.016184 1 43110 43110 67.344 33.241 1 2453000 43651 4276 28950 29682 51414 51414 760 -0.07437609528369649 NYFAYVQMF 9 Oxidation (M) _NYFAYVQM(Oxidation (M))F_ 0 0 1 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 599.765517 1197.51648 -0.037229 -2.2329E-05 -2.7886 -0.0016725 -2.8258 -0.0016948 600.2657043217145 78.623 0.13008 78.137 78.059 78.189 -0.48595 -0.00045139 -0.0022839 NaN 67.344 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 205130 43652 4276 28950 29682 760 -0.07437609528369649 NYFDEQFEF 9 Unmodified _NYFDEQFEF_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7542114257812 2 619.753661 1237.49277 0.33876 0.00020995 0.38923 0.00024123 0.72799 0.00045117 619.7540914151183 81.145 0.41013 81.145 80.937 81.347 0 62 19 4 0 0 0 0.34999 2 45088 44989;45088 14.838 7.7456 1 3363500 43653 6886 28951 29683 51415;51416 51416 -0.11647751761188374 NYFDEQFEF 9 Unmodified _NYFDEQFEF_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.7538452148438 2 619.753661 1237.49277 0.75896 0.00047037 -1.3057 -0.0008092 -0.54673 -0.00033884 619.7528146487825 81.703 0.28043 81.208 81.062 81.342 -0.4952 22 10 3 0 0 0 0.23158 1 44717 44717 20.454 14.248 1 1144000 43654 6886 28951 29683 51417 51417 -0.11647751761188374 NYFDEQFEF 9 Unmodified _NYFDEQFEF_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.7546997070312 2 619.753661 1237.49277 1.2848 0.00079626 0.63248 0.00039198 1.9173 0.0011882 620.2556203550729 81.091 0.27373 81.151 81.041 81.315 0.059929 20 10 2 0 0 0 0.28023 1 44889 44889 18.146 9.4009 1 2829700 43655 6886 28951 29683 51418 51418 -0.11647751761188374 NYFDEQFEF 9 Unmodified _NYFDEQFEF_ 0 0 0 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 ENSG00000162639|ENST00000651461|HENMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.7532958984375 2 619.753661 1237.49277 0.92639 0.00057413 0.11179 6.9285E-05 1.0382 0.00064342 619.7534341399518 89.697 0.80433 83.521 83.096 83.9 -6.1757 111 44 3 0 0 0 0.12424 3 59008 59008;59144;59263 30.637 20.906 1 90724000 43656 6886 28951 29683 51419;51420;51421 51419 -0.11647751761188374 NYFEPLFTW 9 Unmodified _NYFEPLFTW_ 0 0 0 nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 nc|ENSG00000130234|Q9BYF1-3|ACE2 MSMS AL20221201_MKP_PDAC_01 4 608.7866821289062 2 608.787307 1215.56006 NaN NaN NaN NaN NaN NaN NaN 101.47 1 95.297 94.797 95.797 -6.1757 0 0 0 0.6306 1 68084 68084 11.64 4.9171 1 43657 4192 28952 29684 51422 51422 -0.03909676759553804 NYFESTDGLIW 11 Unmodified _NYFESTDGLIW_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8087158203125 2 672.808968 1343.60338 NaN NaN NaN NaN NaN NaN NaN 90.743 1 90.248 89.748 90.748 -0.49457 0 0 0 0.85601 1 49599 49599 9.3831 5.7866 1 43658 10438 28953 29685 51423 51423 -0.05467531772956136 NYFESTDGLIW 11 Unmodified _NYFESTDGLIW_ 0 0 0 nc|ENSG00000213465|P36404-2|ARL2;ENSG00000213465|ENST00000246747|ARL2;ENST00000524585.1_1_11:64781679-64786448:+|nuORF nc|ENSG00000213465|P36404-2|ARL2 nc|ENSG00000213465|P36404-2|ARL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8094482421875 2 672.808968 1343.60338 0.74256 0.0004996 0.27817 0.00018715 1.0207 0.00068675 672.8091607363198 99.49 0.17135 93.314 93.228 93.399 -6.1757 24 10 3 0 0 0 0.028752 1 66254 66254 55.503 37.356 1 83562000 43659 10438 28953 29685 51424 51424 -0.05467531772956136 NYFEVPLPYF 10 Unmodified _NYFEVPLPYF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8180541992188 2 644.816064 1287.61758 0.28726 0.00018523 2.2163 0.0014291 2.5036 0.0016144 644.8175191073818 100.92 0.16058 100.88 100.79 100.95 -0.04216 11 5 4 0 0 0 3.1238E-05 1 56082 56082 123.45 100.71 1 25678000 43660 7082 28954 29686 51425 51425 -0.014728345540106602 NYFEVPLPYF 10 Unmodified _NYFEVPLPYF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3187866210938 2 644.816064 1287.61758 0.74 0.00047716 0.85443 0.00055095 1.5944 0.0010281 644.8164916701859 101.46 0.13753 95.285 95.192 95.33 -6.1757 21 6 5 0 0 0 0.027759 1 68062 68062 69.105 54.267 1 176490000 43661 7082 28954 29686 51426 51426 -0.014728345540106602 NYFHGNISF 9 Unmodified _NYFHGNISF_ 0 0 0 REV__nc|ENSG00000101265|P50749-2|RASSF2 REV__nc|ENSG00000101265|P50749-2|RASSF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7549438476562 2 549.753798 1097.49304 0.30861 0.00016966 -3.4335 -0.0018876 -3.1249 -0.0017179 549.7515810427406 64.428 0.24862 64.428 64.324 64.573 0 19 11 2 0 0 0 0.39863 1 35970 35970 12.532 3.9383 1 3614400 + 43662 18152 28955 29687 51427 51427 -0.051802872506641506 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2786254882812 2 541.276909 1080.53927 0.34074 0.00018444 0.21622 0.00011703 0.55696 0.00030147 541.2768617799561 79.131 0.53134 79.186 78.913 79.445 0.054977 48 20 3 0 0 0 0.012148 2 43641 43641;43753 74.423 50.402 1 14745000 43663 5855;6072;4616 28956 29688 51428;51429 51428 0.0022177765142714634 NYFHLAVAF 9 Unmodified _NYFHLAVAF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.279052734375 2 541.276909 1080.53927 1.048 0.00056728 1.742 0.00094288 2.79 0.0015102 541.2783772448684 96.933 0.27284 90.758 90.572 90.845 -6.1757 46 15 4 0 0 0 0.019303 1 64180 64180 64.236 41.088 1 90763000 43664 5855;6072;4616 28956 29688 51430 51430 0.0022177765142714634 NYFIPSHYF 9 Unmodified _NYFIPSHYF_ 0 0 0 ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH ENSG00000146414|ENST00000275233|SHPRH ENSG00000146414|ENST00000275233|SHPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.280029296875 2 594.279649 1186.54475 0.47204 0.00028052 -0.035626 -2.1172E-05 0.43641 0.00025935 594.279714342708 68.711 0.29782 68.736 68.562 68.86 0.025146 23 13 2 0 0 0 0.026094 1 37727 37727 57.471 37.018 1 8150400 43665 5777 28957 29689 51431 51431 -0.04106543556758879 NYFIPSHYF 9 Unmodified _NYFIPSHYF_ 0 0 0 ENSG00000146414|ENST00000275233|SHPRH;nc|ENSG00000146414|Q149N8-4|SHPRH;nc|ENSG00000146414|Q149N8-5|SHPRH;nc|ENSG00000146414|Q149N8-2|SHPRH ENSG00000146414|ENST00000275233|SHPRH ENSG00000146414|ENST00000275233|SHPRH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 594.279649 1186.54475 0.13893 8.2566E-05 0.9237 0.00054894 1.0626 0.0006315 594.2801394695647 69.243 0.1747 68.762 68.675 68.849 -0.48071 0.013177 0.0010222 NaN 57.471 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 449260 43666 5777 28957 29689 -0.04106543556758879 NYFPGGVALIW 11 Unmodified _NYFPGGVALIW_ 0 0 0 nc|ENSG00000084112|Q8WYL5-3|SSH1;ENST00000547862.6_1_12:109201407-109211001:-|nuORF;nc|ENSG00000084112|Q8WYL5-2|SSH1;nc|ENSG00000084112|Q8WYL5-5|SSH1;ENSG00000084112|ENST00000326495|SSH1 nc|ENSG00000084112|Q8WYL5-3|SSH1 nc|ENSG00000084112|Q8WYL5-3|SSH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.822509765625 2 618.824224 1235.63389 0.86088 0.00053273 -1.1432 -0.00070741 -0.28227 -0.00017468 618.822586934939 101.25 0.12618 95.078 95.018 95.144 -6.1757 12 7 2 0 0 0 0.20815 1 67925 67925 47.749 31.6 1 22925000 43667 1385 28958 29690 51432 51432 0.025502914027583756 NYFQQANEL 9 Unmodified _NYFQQANEL_ 0 0 0 nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7621459960938 2 563.76182 1125.50909 0.057806 3.2589E-05 -1.1828 -0.00066681 -1.125 -0.00063423 563.7611366954477 51.897 0.24325 51.897 51.753 51.996 0 15 10 2 0 0 0 0.047196 1 28679 28679 46.021 28.908 1 3716400 43668 538 28959 29691 51433 51433 -0.048646258044072965 NYFQSSDFL 9 Unmodified _NYFQSSDFL_ 0 0 0 nc|ENSG00000196323|Q8NCP5|ZBTB44;ENSG00000196323|ENST00000357899|ZBTB44 nc|ENSG00000196323|Q8NCP5|ZBTB44 nc|ENSG00000196323|Q8NCP5|ZBTB44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7501220703125 2 560.750921 1119.48729 0.58937 0.00033049 -1.4899 -0.00083548 -0.90056 -0.00050499 560.7499688617868 60.942 0.52495 60.942 60.646 61.171 0 54 21 4 0 0 0 0.094149 2 33965 33965;34065 34.402 3.3906 1 8077800 43669 9797 28960 29692 51434;51435 51434 -0.06767430552986298 NYFRGYEW 8 Unmodified _NYFRGYEW_ 0 0 0 nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC nc|ENSG00000054983|P54803-5|GALC nc|ENSG00000054983|P54803-5|GALC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7540893554688 2 567.753798 1133.49304 0.47704 0.00027084 0.35528 0.00020171 0.83232 0.00047255 567.754018114687 55.175 0.25253 54.697 54.567 54.82 -0.47798 19 11 2 0 0 0 0.19493 1 29928 29928 71.922 31.965 1 3590000 43670 769 28961 29693 51436 51436 -0.06836287250666828 NYFRSECNE 9 Unmodified _NYFRSECNE_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2334594726562 2 581.235113 1160.45567 -0.29052 -0.00016886 -0.88704 -0.00051558 -1.1776 -0.00068444 581.234338798507 25.191 0.23255 25.191 25.051 25.283 0 19 11 2 0 0 0 0.32871 1 12880 12880 15.847 4.2069 1 2066500 + 43671 23727 28962 29694 51437 51437 -0.1181374657858214 NYFYSKFSN 9 Unmodified _NYFYSKFSN_ 0 0 0 REV__nc|ENSG00000105948|A0AVF1-2|IFT56 REV__nc|ENSG00000105948|A0AVF1-2|IFT56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.2672729492188 2 585.266739 1168.51892 1.0813 0.00063284 0.12919 7.5611E-05 1.2105 0.00070845 585.2667994409102 57.551 0.37498 57.485 57.259 57.634 -0.066036 38 18 3 0 0 0 0.12424 1 31354 31354 30.637 7.4881 1 3707300 + 43672 18475 28963 29695 51438 51438 -0.05859437799017542 NYFYSKFSN 9 Unmodified _NYFYSKFSN_ 0 0 0 REV__nc|ENSG00000105948|A0AVF1-2|IFT56 REV__nc|ENSG00000105948|A0AVF1-2|IFT56 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7972412109375 2 585.266739 1168.51892 1.0813 0.00063284 0.12919 7.5611E-05 1.2105 0.00070845 585.2667994409102 57.551 0.37498 57.485 57.259 57.634 -0.066036 38 18 3 0 0 0 0.16418 1 31346 31346 25.399 2.2509 1 3707300 + 43673 18475 28963 29695 51439 51439 -0.05859437799017542 NYGCLDCTDD 10 Unmodified _NYGCLDCTDD_ 0 0 0 REV__ENST00000568469.5_1_16:19049201-19056398:+|nuORF REV__ENST00000568469.5_1_16:19049201-19056398:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.6941528320312 2 559.691889 1117.36922 NaN NaN NaN NaN NaN NaN NaN 109.28 1 103.1 102.6 103.6 -6.1757 0 0 0 1.0019 1 72989 72989 0.45834 0 1 + 43674 22490 28964 29696 51440 51440 -0.18476494195488158 NYGDIELLF 9 Unmodified _NYGDIELLF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2735595703125 2 542.27149 1082.52843 0.22583 0.00012246 0.89926 0.00048764 1.1251 0.0006101 542.2719942224547 96.378 0.32244 96.378 96.254 96.577 0 43 25 2 0 0 0 0.32871 1 53310 53310 15.847 10.617 1 542910 43675 9805 28965 29697 51441 51441 -0.009536695135238915 NYGDIELLF 9 Unmodified _NYGDIELLF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7738037109375 2 542.27149 1082.52843 0.17334 9.4E-05 0.54672 0.00029647 0.72007 0.00039047 542.2717442774241 96.879 0.25321 96.574 96.433 96.686 -0.30472 30 16 2 0 0 0 0.55144 1 52882 52882 4.3292 1.44 1 512500 43676 9805 28965 29697 51442 51442 -0.009536695135238915 NYGDIELLF 9 Unmodified _NYGDIELLF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2721557617188 2 542.27149 1082.52843 0.70341 0.00038144 0.47904 0.00025977 1.1824 0.00064121 542.2716184264505 100.53 0.16354 94.352 94.254 94.418 -6.1757 24 9 3 0 0 0 0.018301 1 67232 67232 65.235 31.133 1 113680000 43677 9805 28965 29697 51443 51443 -0.009536695135238915 NYGDYFNVF 9 Unmodified _NYGDYFNVF_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7461547851562 2 569.745639 1137.47673 0.67254 0.00038317 0.23825 0.00013574 0.91079 0.00051892 569.7458662960463 84.217 0.2243 83.717 83.594 83.819 -0.49961 18 9 2 0 0 0 0.51371 1 46084 46084 10.074 5.3179 1 876210 43678 2488 28966 29698 51444 51444 -0.08651413207417136 NYGDYFNVF 9 Unmodified _NYGDYFNVF_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7457275390625 2 569.745639 1137.47673 1.0422 0.00059379 -1.8398 -0.0010482 -0.79761 -0.00045443 569.7445600253467 92.37 0.3959 86.194 85.986 86.382 -6.1757 31 23 2 0 0 0 0.060956 1 61063 61063 53.833 32.086 1 18210000 43679 2488 28966 29698 51445 51445 -0.08651413207417136 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.2098388671875 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 4.0856 1 4.0856 3.5856 4.5856 0 0 0 0 0.9435 1 1975 1975 0 0 1 + 43680 29974 28967 29699 51446 51446 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.21044921875 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 11.325 1 11.325 10.825 11.825 0 0 0 0 0.9435 1 5371 5371 0 0 1 + 43681 29974 28967 29699 51447 51447 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.209716796875 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 1.9512 1 1.8792 1.3792 2.3792 -0.072029 0 0 0 0.9435 1 973 973 0 0 1 + 43682 29974 28967 29699 51448 51448 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2134399414062 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 8.5452 1 8.4536 7.9536 8.9536 -0.09156 0 0 0 0.9435 1 4192 4192 0 0 1 + 43683 29974 28967 29699 51449 51449 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2096557617188 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 1.7606 1 1.7436 1.2436 2.2436 -0.017019 0 0 0 0.9435 1 903 903 0 0 1 + 43684 29974 28967 29699 51450 51450 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2110595703125 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 1.9834 1 1.9664 1.4664 2.4664 -0.017019 0 0 0 0.9435 1 1017 1017 0 0 1 + 43685 29974 28967 29699 51451 51451 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.211669921875 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 2.2185 1 2.2015 1.7015 2.7015 -0.017019 0 0 0 0.9435 1 1133 1133 0 0 1 + 43686 29974 28967 29699 51452 51452 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2093505859375 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 6.3954 1 6.4043 5.9043 6.9043 0.0089307 0 0 0 0.9435 1 3206 3206 0 0 1 + 43687 29974 28967 29699 51453 51453 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2083129882812 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 7.1215 1 7.1367 6.6367 7.6367 0.015238 0 0 0 0.9435 1 3554 3554 0 0 1 + 43688 29974 28967 29699 51454 51454 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2085571289062 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 7.6015 1 7.6167 7.1167 8.1167 0.015238 0 0 0 0.9435 1 3791 3791 0 0 1 + 43689 29974 28967 29699 51455 51455 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2093505859375 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 8.9036 1 8.9212 8.4212 9.4212 0.017581 0 0 0 0.9435 1 4425 4425 0 0 1 + 43690 29974 28967 29699 51456 51456 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2091674804688 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 11.796 1 11.808 11.308 12.308 0.012355 0 0 0 0.9435 1 5822 5822 0 0 1 + 43691 29974 28967 29699 51457 51457 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20221201_MKP_PDAC_01 4 607.2099609375 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 8.1068 1 5.6249 5.1249 6.1249 -2.482 0 0 0 0.9435 1 4092 4092 0 0 1 + 43692 29974 28967 29699 51458 51458 -0.19223622493427683 NYGEEDEEDGG 11 Unmodified _NYGEEDEEDGG_ 0 0 0 REV__nc|ENSG00000248546|O43423|ANP32CP REV__nc|ENSG00000248546|O43423|ANP32CP MSMS AL20221201_MKP_PDAC_01 4 607.2098999023438 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 10.25 1 7.7676 7.2676 8.2676 -2.482 0 0 0 0.9435 1 5169 5169 0 0 1 + 43693 29974 28967 29699 51459 51459 -0.19223622493427683 NYGHVYAVF 9 Unmodified _NYGHVYAVF_ 0 0 0 nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G nc|ENSG00000067829|P51553-2|IDH3G nc|ENSG00000067829|P51553-2|IDH3G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2567138671875 2 535.258717 1068.50288 0.42276 0.00022629 -1.4905 -0.00079778 -1.0677 -0.00057149 535.2581393079129 53.66 0.31661 53.208 53.046 53.362 -0.45173 44 15 4 0 0 0 0.052168 1 29032 29032 44.407 21.259 1 24046000 43694 966 28968 29700 51460 51460 -0.028630992453145154 NYGHVYAVF 9 Unmodified _NYGHVYAVF_ 0 0 0 nc|ENSG00000067829|P51553-2|IDH3G;ENSG00000067829|ENST00000217901|IDH3G nc|ENSG00000067829|P51553-2|IDH3G nc|ENSG00000067829|P51553-2|IDH3G MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2805786132812 2 535.258717 1068.50288 1.3608 0.00072836 -1.3042 -0.0006981 0.056533 3.026E-05 535.2580130695931 58.944 0.4121 52.87 52.618 53.03 -6.0745 53 22 3 0 0 0 0.18882 1 37889 37889 15.847 7.937 1 64012000 43695 966 28968 29700 51461 51461 -0.028630992453145154 NYGLRTFLF 9 Unmodified _NYGLRTFLF_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8028564453125 2 565.803291 1129.59203 0.34099 0.00019293 -1.8136 -0.0010261 -1.4726 -0.00083318 565.8022261654955 80.328 0.2019 80.386 80.293 80.495 0.057587 15 9 2 0 0 0 0.0093064 1 44401 44401 83.429 49.027 1 9966100 43696 4182 28969 29701 51462 51462 0.032417357142321634 NYGLRTFLF 9 Unmodified _NYGLRTFLF_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8043212890625 2 565.803291 1129.59203 1.5405 0.00087163 -0.094582 -5.3515E-05 1.4459 0.00081812 565.8032209342086 98.362 0.16006 92.186 92.12 92.28 -6.1757 22 9 3 0 0 0 0.024189 1 65258 65258 59.368 25.266 1 58495000 43697 4182 28969 29701 51463 51463 0.032417357142321634 NYGQYFTLW 9 Unmodified _NYGQYFTLW_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2784423828125 2 596.277106 1190.53966 1.5266 0.00091029 0.22588 0.00013469 1.7525 0.001045 596.277162921552 92.81 0.51224 92.84 92.599 93.111 0.030197 65 20 5 0 0 0 0.07087 2 51640 51545;51640 53.576 35.441 1 40312000 43698 2685 28970 29702 51464;51465 51465 -0.04798847419397134 NYGQYFTLW 9 Unmodified _NYGQYFTLW_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.275390625 2 596.277106 1190.53966 0.090744 5.4108E-05 0.060182 3.5885E-05 0.15093 8.9993E-05 596.2770943689055 99.898 0.23208 93.722 93.623 93.855 -6.1757 51 16 4 0 0 0 0.013609 1 66615 66615 88.904 56.598 1 504100000 43699 2685 28970 29702 51466 51466 -0.04798847419397134 NYGRVFSEW 9 Unmodified _NYGRVFSEW_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2738647460938 2 579.272355 1156.53016 -0.20752 -0.00012021 0.90509 0.00052429 0.69757 0.00040408 579.2727402098137 56.751 0.37109 56.265 56.108 56.479 -0.48554 59 18 5 0 0 0 0.01085 2 30899 30792;30899 96.111 69.505 1 47866000 43700 3044 28971 29703 51467;51468 51468 -0.04184615704912176 NYGRVFSEW 9 Unmodified _NYGRVFSEW_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.272705078125 2 579.272355 1156.53016 0.36955 0.00021407 -1.1053 -0.0006403 -0.7358 -0.00042623 579.2717534522565 56.461 0.249 56.393 56.248 56.497 -0.068737 19 12 2 0 0 0 0.0091809 1 30686 30686 103.35 58.946 1 12550000 43701 3044 28971 29703 51469 51469 -0.04184615704912176 NYGRVFSEW 9 Unmodified _NYGRVFSEW_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2717895507812 2 579.272355 1156.53016 0.47156 0.00027316 -1.662 -0.00096273 -1.1904 -0.00068957 579.27236169108 62.109 0.86103 55.933 55.537 56.398 -6.1757 123 47 4 0 0 0 0.011739 2 39991 39991;40121 92.653 58.252 1 192560000 43702 3044 28971 29703 51470;51471 51470 -0.04184615704912176 NYGRVFSEW 9 Unmodified _NYGRVFSEW_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4 ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2739868164062 2 579.272355 1156.53016 0.58949 0.00034147 0.17146 9.9324E-05 0.76095 0.0004408 579.2728783500911 65.989 1.3321 59.813 59.036 60.368 -6.1757 123 76 2 0 0 0 0.0084276 4 42805 42508;42667;42805;42947 122.18 77.772 1 32278000 43703 3044 28971 29703 51472;51473;51474;51475 51474 -0.04184615704912176 NYGSFLAP 8 Unmodified _NYGSFLAP_ 0 0 0 nc|ENSG00000146039|Q9Y2C5-2|SLC17A4;ENSG00000146039|ENST00000377905|SLC17A4 nc|ENSG00000146039|Q9Y2C5-2|SLC17A4 nc|ENSG00000146039|Q9Y2C5-2|SLC17A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 868.4228515625 1 868.419945 867.412668 -0.055198 -4.7935E-05 -0.41116 -0.00035706 -0.46636 -0.000405 868.4196390784799 64.677 0.30127 64.191 64.014 64.316 -0.48512 26 13 2 0 0 0 0.63229 1 35221 35221 23.148 5.0134 1 3226100 43704 5747 28972 29704 51476 51476 -0.02634148573724815 NYGTGMERW 9 Oxidation (M) _NYGTGM(Oxidation (M))ERW_ NYGTGM(1)ERW NYGTGM(42)ERW 0 0 1 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7433471679688 2 565.240198 1128.46584 1.4099 0.00079693 0.83521 0.0004721 2.2451 0.001269 565.7427489361881 33.589 0.33552 29.604 29.507 29.842 -3.9853 32 18 2 0 0 0 0.062454 1 19278 19278 41.956 16.556 1 8573700 43705 5963 28973 29705 51477 51477 1065 -0.09325138853364479 NYGTGMERW 9 Unmodified _NYGTGMERW_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.242431640625 2 557.242741 1112.47093 0.70178 0.00039106 0.38031 0.00021193 1.0821 0.00060299 557.2431391687467 44.365 0.28594 39.513 39.328 39.614 -4.852 28 21 2 0 0 0 0.033587 1 27049 27049 53.404 30.256 1 12192000 43706 5963 28973 29706 51478 51478 -0.0808083499073291 NYGVLLHEL 9 Unmodified _NYGVLLHEL_ 0 0 0 nc|ENSG00000111325|Q6N063-4|OGFOD2;nc|ENSG00000111325|Q6N063-2|OGFOD2;ENSG00000111325|ENST00000228922|OGFOD2 nc|ENSG00000111325|Q6N063-4|OGFOD2 nc|ENSG00000111325|Q6N063-4|OGFOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2867431640625 2 529.287474 1056.5604 0.34087 0.00018042 -0.5938 -0.00031429 -0.25292 -0.00013387 529.287081720252 64.484 0.24839 64.484 64.365 64.614 0 22 12 2 0 0 0 0.031062 1 35956 35956 54.774 33.027 1 3146700 43707 2780 28974 29707 51479 51479 0.034377429602727716 NYGVLLHEL 9 Unmodified _NYGVLLHEL_ 0 0 0 nc|ENSG00000111325|Q6N063-4|OGFOD2;nc|ENSG00000111325|Q6N063-2|OGFOD2;ENSG00000111325|ENST00000228922|OGFOD2 nc|ENSG00000111325|Q6N063-4|OGFOD2 nc|ENSG00000111325|Q6N063-4|OGFOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2882080078125 2 529.287474 1056.5604 0.33627 0.00017798 0.91404 0.00048379 1.2503 0.00066177 529.2876944390043 64.932 0.32114 64.447 64.274 64.595 -0.48428 35 14 3 0 0 0 0.047196 2 35397 35397;35501 46.021 30.174 1 2362300 43708 2780 28974 29707 51480;51481 51480 0.034377429602727716 NYGVVESF 8 Unmodified _NYGVVESF_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.4259033203125 1 914.425424 913.418148 0.33104 0.00030272 -1.3775 -0.0012596 -1.0465 -0.00095691 914.4240456489821 54.833 0.3152 54.833 54.689 55.005 0 30 13 3 0 0 0 0.084609 2 30419 30419;30524 104.8 62.705 1 8620800 43709 9765 28975 29708 51482;51483 51482 -0.04202469781898799 NYGVVESF 8 Unmodified _NYGVVESF_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.42431640625 1 914.425424 913.418148 0.52664 0.00048157 0.21052 0.00019251 0.73716 0.00067408 914.4253806515188 63.043 0.34354 56.867 56.676 57.019 -6.1757 26 17 2 0 0 0 0.054506 1 40690 40690 139.54 75.981 1 15910000 43710 9765 28975 29708 51484 51484 -0.04202469781898799 NYGYDSYESCD 11 Unmodified _NYGYDSYESCD_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.225830078125 2 658.224607 1314.43466 0.65225 0.00042933 -0.65777 -0.00043296 -0.0055162 -3.6309E-06 658.225038627117 53.042 0.17856 52.978 52.845 53.024 -0.063423 10 8 2 0 0 0 0.73115 1 28755 28755 1.3295 0 1 898110 43711 16019 28976 29709 51485 51485 -0.20997801468752186 NYHAQHYHL 9 Unmodified _NYHAQHYHL_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8528137207031 3 394.852823 1181.53664 -0.52979 -0.00020919 -0.013469 -5.3181E-06 -0.54326 -0.00021451 394.85269072812633 19.215 0.13552 19.215 19.147 19.282 0 20 8 3 0 0 0 0.37804 1 9587 9587 13.042 9.4554 1 2457300 43712 7164 28977 29710 51486 51486 -0.04686677753534241 NYHAQHYHL 9 Unmodified _NYHAQHYHL_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8538208007812 3 394.852823 1181.53664 1.3562 0.00053549 -0.068861 -2.719E-05 1.2873 0.0005083 394.85274962540217 20.65 0.36853 17.957 17.742 18.11 -2.693 67 22 4 0 0 0 0.12841 2 10933 10933;11033 21.537 13.957 1 12035000 43713 7164 28977 29710 51487;51488 51487 -0.04686677753534241 NYHAQHYHL 9 Unmodified _NYHAQHYHL_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 394.852823 1181.53664 -0.51707 -0.00020417 0.85067 0.00033589 0.33359 0.00013172 394.8529551987376 19.08 0.075172 19.103 19.05 19.125 0.023106 -0.055962 0.00085594 NaN 13.042 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 499260 43714 7164 28977 29710 -0.04686677753534241 NYHGQDLLF 9 Unmodified _NYHGQDLLF_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2681884765625 2 553.766906 1105.51926 0.71842 0.00039784 -0.61453 -0.00034031 0.10388 5.7528E-05 553.7678693860182 57.021 0.40876 57.021 56.813 57.221 0 35 17 3 0 0 0 0.10734 1 31773 31773 32.305 6.9062 1 5546200 43715 7110 28978 29711 51489 51489 -0.029280180792056854 NYHGQDLLF 9 Unmodified _NYHGQDLLF_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2713012695312 2 553.766906 1105.51926 0.63876 0.00035372 -0.11233 -6.2202E-05 0.52643 0.00029152 553.766867195319 57.439 0.31061 56.949 56.816 57.126 -0.48974 22 14 2 0 0 0 0.16226 1 31206 31206 26.884 7.4447 1 3937100 43716 7110 28978 29711 51490 51490 -0.029280180792056854 NYIDIVKYVF 10 Unmodified _NYIDIVKYVF_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3470458984375 2 637.344989 1272.67542 1.9483 0.0012417 0.33183 0.00021149 2.2801 0.0014532 637.3450317988123 94.187 0.34918 94.201 94.003 94.352 0.014244 40 12 4 0 0 0 0.095786 2 52302 52302;52407 47.594 23.805 1 8211500 43717 6855 28979 29712 51491;51492 51491 0.04999427371421916 NYIDIVKYVF 10 Unmodified _NYIDIVKYVF_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3444213867188 2 637.344989 1272.67542 0.13216 8.4232E-05 1.2795 0.0008155 1.4117 0.00089973 637.3446443553382 99.764 0.1132 93.589 93.525 93.638 -6.1757 13 7 2 0 0 0 0.039874 1 66540 66540 63.227 33.387 1 36935000 43718 6855 28979 29712 51493 51493 0.04999427371421916 NYIDLDLVKDF 11 Unmodified _NYIDLDLVKDF_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8486328125 2 677.848093 1353.68163 0.4497 0.00030483 1.1796 0.0007996 1.6293 0.0011044 677.8485808545605 87.468 0.1599 86.964 86.9 87.06 -0.50423 8 6 2 0 0 0 0.7326 1 47875 47875 1.1933 0.735 1 304560 43719 7828 28980 29713 51494 51494 0.018939008122970336 NYIDLDLVKDF 11 Unmodified _NYIDLDLVKDF_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MSMS AL20221201_MKP_PDAC_01 4 677.848388671875 2 677.848093 1353.68163 NaN NaN NaN NaN NaN NaN NaN 98.475 1 92.299 91.799 92.799 -6.1757 0 0 0 0.54769 1 65323 65323 22.775 8.3696 1 43720 7828 28980 29713 51495 51495 0.018939008122970336 NYIEALNKL 9 Unmodified _NYIEALNKL_ 0 0 0 ENSG00000182923|ENST00000675561|CEP63 ENSG00000182923|ENST00000675561|CEP63 ENSG00000182923|ENST00000675561|CEP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3006591796875 2 539.300581 1076.58661 0.09405 5.0721E-05 0.98644 0.00053199 1.0805 0.00058271 539.300635297431 59.906 0.21358 59.416 59.313 59.527 -0.49079 18 10 3 0 0 0 0.06294 1 32605 32605 41.84 16.44 1 2185900 43721 9100 28981 29714 51496 51496 0.05138012131760661 NYIEFTRIL 9 Unmodified _NYIEFTRIL_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8211059570312 2 584.821681 1167.62881 -0.059205 -3.4624E-05 -0.56424 -0.00032998 -0.62345 -0.00036461 584.8213639141115 76.504 0.3602 76.025 75.835 76.195 -0.47945 63 23 3 0 0 0 0.025842 2 41836 41836;41939 57.722 21.216 1 14035000 43722 3386 28982 29715 51497;51498 51497 0.05169987540148213 NYIEFTRIL 9 Unmodified _NYIEFTRIL_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8225708007812 2 584.821681 1167.62881 0.51519 0.00030129 -0.24272 -0.00014195 0.27247 0.00015935 584.8214507833931 75.965 0.33991 76.013 75.82 76.16 0.047951 48 14 5 0 0 0 0.025842 2 41853 41853;41963 57.722 21.216 1 31875000 43723 3386 28982 29715 51499;51500 51499 0.05169987540148213 NYIEFTRIL 9 Unmodified _NYIEFTRIL_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8224487304688 2 584.821681 1167.62881 0.56594 0.00033097 0.23798 0.00013917 0.80391 0.00047015 584.8219677374915 92.711 0.57105 86.536 86.235 86.806 -6.1757 93 35 3 0 0 0 0.040683 2 61269 61269;61390 49.554 24.155 1 65607000 43724 3386 28982 29715 51501;51502 51501 0.05169987540148213 NYIEGLYYSF 10 Unmodified _NYIEGLYYSF_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.79638671875 2 634.795329 1267.5761 0.15775 0.00010014 -0.2342 -0.00014867 -0.076451 -4.8531E-05 634.795271130523 86.8 0.27751 86.297 86.165 86.443 -0.50318 13 10 2 0 0 0 0.66569 1 47490 47490 6.7232 3.4419 1 447780 43725 7217 28983 29716 51503 51503 -0.04698015313351789 NYIEKVVAI 9 Unmodified _NYIEKVVAI_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.805908203125 2 524.8055 1047.59645 0.6751 0.0003543 0.10576 5.5504E-05 0.78086 0.0004098 524.8055602825724 56.965 0.39082 56.965 56.786 57.177 0 54 16 4 0 0 0 0.0081887 2 31667 31667;31771 93.166 36.989 1 54605000 43726 16217 28984 29717 51504;51505 51504 0.07455200137133033 NYIEKVVAI 9 Unmodified _NYIEKVVAI_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8074340820312 2 524.8055 1047.59645 0.35901 0.00018841 -0.48878 -0.00025651 -0.12976 -6.81E-05 524.805286380125 57.486 0.41066 56.996 56.816 57.226 -0.48974 65 19 5 0 0 0 0.0090524 2 31185 31185;31287 85.642 33.373 1 82117000 43727 16217 28984 29717 51506;51507 51506 0.07455200137133033 NYIEKVVAI 9 Unmodified _NYIEKVVAI_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.8047485351562 2 524.8055 1047.59645 0.68019 0.00035697 -1.177 -0.00061767 -0.49676 -0.0002607 524.805087012613 57.131 0.26407 57.065 56.917 57.181 -0.066036 28 12 3 0 0 0 0.013609 1 31057 31057 70.332 26.474 1 7670600 43728 16217 28984 29717 51508 51508 0.07455200137133033 NYIEKVVAI 9 Unmodified _NYIEKVVAI_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.806396484375 2 524.8055 1047.59645 1.1063 0.00058058 1.2526 0.00065739 2.3589 0.001238 524.805902338357 63.589 0.83971 57.414 57.156 57.996 -6.1757 121 46 4 0 0 0 0.0093064 3 41313 41032;41179;41313 83.429 35.738 1 225540000 43729 16217 28984 29717 51509;51510;51511 51511 0.07455200137133033 NYIFEIEGGA 10 Unmodified _NYIFEIEGGA_ 0 0 0 ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS ENSG00000174004|ENST00000328557|NRROS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.76708984375 2 556.766571 1111.51859 0.71688 0.00039913 -0.39244 -0.0002185 0.32444 0.00018064 556.7663686580577 84.083 0.40478 83.583 83.392 83.797 -0.49961 31 17 2 0 0 0 0.60623 1 46081 46081 10.824 10.824 1 3875200 43730 8383 28985 29718 51512 51512 -0.03270857518896264 NYIFRLSQF 9 Unmodified _NYIFRLSQF_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3150024414062 2 594.314023 1186.61349 0.066524 3.9536E-05 2.3043 0.0013695 2.3708 0.001409 594.315004075769 73.327 0.3147 73.37 73.23 73.545 0.043716 34 13 4 0 0 0 0.014182 1 40417 40417 85.642 41.783 1 2019200 43731 10739 28986 29719 51513 51513 0.027651207429244096 NYIGINVKK 9 Unmodified _NYIGINVKK_ 0 0 0 nc|ENSG00000008226|Q9Y238-3|DLEC1;ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-2|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.778076171875 2 524.811116 1047.60768 0.043374 2.2763E-05 0.82682 0.00043393 0.8702 0.00045669 524.8115609862851 72.327 0.45078 72.369 72.21 72.661 0.041725 33 20 2 0 0 0 0.1176 1 39803 39803 36.127 19.014 1 2197000 43732 379 28987 29720 51514 51514 0.08578022231290561 NYIGISLRI 9 Unmodified _NYIGISLRI_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8121948242188 2 524.811116 1047.60768 1.0635 0.00055812 2.217 0.0011635 3.2804 0.0017216 525.3144270422628 87.461 0.70724 81.285 80.788 81.495 -6.1757 58 38 3 0 0 0 0.080011 2 57733 57688;57733 47.594 5.8285 1 12803000 43733 5034 28988 29721 51515;51516 51516 0.08578022231290561 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3165893554688 2 538.316566 1074.61858 0.065084 3.5036E-05 0.051916 2.7947E-05 0.117 6.2983E-05 538.3166062176011 65.431 0.54057 64.947 64.705 65.246 -0.48428 78 24 5 0 0 0 0.022193 2 35751 35646;35751 61.357 27.89 1 111480000 43734 776 28989 29722 51517;51518 51518 0.08425424605570697 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3173828125 2 538.316566 1074.61858 0.59871 0.0003223 -0.98791 -0.00053181 -0.3892 -0.00020951 538.3159450919707 64.906 0.82159 64.906 64.656 65.478 7.6294E-06 135 39 5 0 0 0 0.0095811 3 35680 35467;35570;35680 81.613 33.267 1 910170000 43735 776 28989 29722 51519;51520;51521 51521 0.08425424605570697 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.317138671875 2 538.316566 1074.61858 0.39886 0.00021471 0.091033 4.9005E-05 0.48989 0.00026372 538.3166628049195 78.485 2.8848 72.309 70.45 73.335 -6.1757 519 166 4 0 0 0 0.0082485 9 50892 50656;50774;50892;51025;51149;51274;51403;51532;51665 100.37 36.135 1 517150000 43736 776 28989 29722 51522;51523;51524;51525;51526;51527;51528;51529;51530 51524 0.08425424605570697 NYIGLINRI 9 Unmodified _NYIGLINRI_ 0 0 0 ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2;ENSG00000055332|ENST00000233057|EIF2AK2 ENST00000496059.1_1_2:37364124-37368826:-|nuORF ENST00000496059.1_1_2:37364124-37368826:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.316566 1074.61858 0.17453 9.3952E-05 0.56558 0.00030446 0.74011 0.00039841 538.8172411529509 64.964 0.1506 64.964 64.901 65.052 0 0.025363 0.0010216 NaN 81.613 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 954240 43737 776 28989 29722 0.08425424605570697 NYIHMHLF 8 Unmodified _NYIHMHLF_ 0 0 0 ENSG00000160801|ENST00000449590|PTH1R;ENSG00000144407|ENST00000272847|PTH2R;ENSG00000080293|ENST00000019103|SCTR;ENST00000446673.5_1_3:42544163-42573332:+|nuORF;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1;nc|ENSG00000114812|P32241-2|VIPR1 ENSG00000160801|ENST00000449590|PTH1R;ENST00000446673.5_1_3:42544163-42573332:+|nuORF ENSG00000160801|ENST00000449590|PTH1R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.3053588867188 2 537.763112 1073.51167 0.48811 0.00026249 -1.6906 -0.00090913 -1.2025 -0.00064665 537.7625703252841 77.492 0.51431 71.317 71.037 71.551 -6.1757 67 29 3 0 0 0 8.7369 1 50502 50502 14.582 4.3983 1 35329000 43738 6757;3066 28990 29723 51531 51531 -0.022144488804769935 NYIHMHLFL 9 Unmodified _NYIHMHLFL_ 0 0 0 ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R ENSG00000160801|ENST00000449590|PTH1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5396118164062 3 396.539188 1186.59573 1.4839 0.00058842 -0.29454 -0.0001168 1.1893 0.00047162 396.5388592067367 95.897 0.20072 89.722 89.584 89.785 -6.1757 16 11 2 0 0 0 0.2001 1 63515 63515 16.149 0 1 7189200 43739 6757 28991 29724 51532 51532 0.009900822164354395 NYIHVGAQL 9 Unmodified _NYIHVGAQL_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7731018066406 2 507.771991 1013.52943 0.44307 0.00022498 -0.15491 -7.866E-05 0.28815 0.00014632 507.77186328355265 45.693 0.23671 45.693 45.567 45.803 0 22 11 3 0 0 0 0.0090948 1 24905 24905 85.272 34.417 1 15524000 43740 8612 28992 29725 51533 51533 0.023205896460467557 NYIHVGAQL 9 Unmodified _NYIHVGAQL_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7710876464844 2 507.771991 1013.52943 -0.14548 -7.3869E-05 -0.044727 -2.2711E-05 -0.1902 -9.658E-05 507.77192117691965 45.964 0.2275 45.64 45.547 45.774 -0.32425 21 11 3 0 0 0 0.0082485 1 24573 24573 96.285 42.709 1 9554600 43741 8612 28992 29725 51534 51534 0.023205896460467557 NYIHVGAQL 9 Unmodified _NYIHVGAQL_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.774169921875 2 507.771991 1013.52943 0.56808 0.00028846 1.0715 0.00054406 1.6395 0.00083251 508.2741124824732 51.549 0.36742 45.9 45.737 46.104 -5.649 51 22 3 0 0 0 0.0018186 3 32415 32415;32559;32566 133.7 51.838 1 85695000 43742 8612 28992 29725 51535;51536;51537 51535 0.023205896460467557 NYIIALATD 9 Unmodified _NYIIALATD_ 0 0 0 REV__ENSG00000274252|ENST00000619998|GGTLC3 REV__ENSG00000274252|ENST00000619998|GGTLC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7901306152344 2 497.266207 992.517862 0.70897 0.00035255 -0.41683 -0.00020727 0.29215 0.00014527 497.26629838048143 68.645 0.24898 68.67 68.499 68.748 0.025146 23 11 3 0 0 0 0.19205 1 37659 37659 14.838 2.3067 1 3517700 + 43743 24642 28993 29726 51538 51538 0.02130347832053303 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3168334960938 2 553.316232 1104.61791 0.57879 0.00032026 0.26317 0.00014562 0.84196 0.00046587 553.3162717753013 66.294 0.33525 66.294 66.135 66.47 0 40 14 4 0 0 0 0.018061 2 36936 36936;37043 81.89 35.869 1 7585400 43744 4967 28994 29727 51539;51540 51539 0.06978585165848017 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3162231445312 2 553.316232 1104.61791 0.4092 0.00022642 0.033794 1.8699E-05 0.44299 0.00024512 553.3161158442385 66.746 0.45694 66.263 66.046 66.503 -0.48323 73 21 5 0 0 0 0.0099157 2 36481 36382;36481 99.799 31.718 1 65996000 43745 4967 28994 29727 51541;51542 51542 0.06978585165848017 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.31640625 2 553.316232 1104.61791 1.1228 0.00062126 0.15109 8.3601E-05 1.2739 0.00070486 553.3162141806091 66.241 0.39454 66.25 66.064 66.459 0.0095596 48 19 3 0 0 0 0.0091809 2 36305 36305;36412 103.35 38.118 1 12549000 43746 4967 28994 29727 51543;51544 51543 0.06978585165848017 NYIKDLNIL 9 Unmodified _NYIKDLNIL_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.31787109375 2 553.316232 1104.61791 0.87156 0.00048225 -0.57082 -0.00031585 0.30073 0.0001664 553.3158785057495 80.462 1.957 74.286 73.421 75.378 -6.1757 294 113 3 0 0 0 0.0091809 6 52418 52245;52418;52545;52683;52807;53425 103.35 38.118 1 62132000 43747 4967 28994 29727 51545;51546;51547;51548;51549;51550 51546 0.06978585165848017 NYIKRNWRI 9 Unmodified _NYIKRNWRI_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5753784179688 3 421.575401 1261.70437 -0.25334 -0.0001068 0.42827 0.00018055 0.17493 7.3746E-05 421.57549840393057 31.524 0.21608 31.554 31.432 31.648 0.030106 24 9 3 0 0 0 0.069655 1 16503 16503 40.239 30.695 1 11408000 43748 3762;16168 28995 29728 51551 51551 0.08399009511072109 NYIKRNWRI 9 Unmodified _NYIKRNWRI_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5756530761719 3 421.575401 1261.70437 0.8875 0.00037415 -0.16144 -6.806E-05 0.72606 0.00030609 421.5753066524179 35.424 0.35407 31.231 31.04 31.394 -4.1928 54 21 3 0 0 0 0.040683 2 20597 20460;20597 49.554 29.567 1 50753000 43749 3762;16168 28995 29728 51552;51553 51553 0.08399009511072109 NYIKRNWRI 9 Unmodified _NYIKRNWRI_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MSMS AL20221201_MKP_PDAC_01 4 421.5758666992188 3 421.575401 1261.70437 NaN NaN NaN NaN NaN NaN NaN 74.16 1 67.984 67.484 68.484 -6.1757 0 0 0 0.17798 1 48488 48488 33.445 16.879 1 43750 3762;16168 28995 29728 51554 51554 0.08399009511072109 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7798461914062 2 529.779482 1057.54441 0.27323 0.00014475 -1.3346 -0.00070704 -1.0614 -0.00056229 529.779655615936 52.985 0.46328 52.533 52.219 52.682 -0.45173 73 23 4 0 0 0 0.05447 1 28645 28645 43.858 19.838 1 19058000 43751 6500 28996 29729 51555 51555 0.017940367233904908 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7798461914062 2 529.779482 1057.54441 0.74569 0.00039505 -0.41748 -0.00022117 0.32822 0.00017388 529.7794554514558 52.637 0.46078 52.578 52.267 52.728 -0.058918 62 22 3 0 0 0 0.012668 1 28489 28489 72.968 45.339 1 16793000 43752 6500 28996 29729 51556 51556 0.017940367233904908 NYIKSLSSF 9 Unmodified _NYIKSLSSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000566127.1_1_16:29540393-29548932:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7804565429688 2 529.779482 1057.54441 1.4592 0.00077304 0.040547 2.1481E-05 1.4997 0.00079452 529.7797680685129 58.815 0.64208 52.74 52.439 53.081 -6.0745 89 35 3 0 0 0 0.014417 2 37705 37705;37839 69.105 29.155 1 107880000 43753 6500 28996 29729 51557;51558 51557 0.017940367233904908 NYIKTQLKESA 11 Unmodified _NYIKTQLKESA_ 0 0 0 ENST00000295777.9_1_3:167453648-167453711:+|nuORF ENST00000295777.9_1_3:167453648-167453711:+|nuORF ENST00000295777.9_1_3:167453648-167453711:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2394409179688 3 432.238232 1293.69287 0.28393 0.00012273 1.5893 0.00068694 1.8732 0.00080966 432.5729964996658 28.486 0.25668 28.516 28.424 28.681 0.029564 21 9 3 0 0 0 0.58245 1 14861 14861 12.228 1.1623 1 4271200 43754 11497 28997 29730 51559 51559 0.05776722906443865 NYIKTQLKESA 11 Unmodified _NYIKTQLKESA_ 0 0 0 ENST00000295777.9_1_3:167453648-167453711:+|nuORF ENST00000295777.9_1_3:167453648-167453711:+|nuORF ENST00000295777.9_1_3:167453648-167453711:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2392272949219 3 432.238232 1293.69287 0.9028 0.00039022 0.50977 0.00022034 1.4126 0.00061057 432.2386967448578 31.985 0.32261 28.289 28.122 28.445 -3.6958 34 17 3 0 0 0 0.61596 1 18139 18139 10.527 1.7757 1 22153000 43755 11497 28997 29730 51560 51560 0.05776722906443865 NYILSPDEKF 10 Unmodified _NYILSPDEKF_ 0 0 0 ENSG00000187535|ENST00000426508|IFT140;ENST00000439987.6_1_16:1604037-1657279:-|nuORF ENSG00000187535|ENST00000426508|IFT140 ENSG00000187535|ENST00000426508|IFT140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.8094482421875 2 613.308603 1224.60265 0.62477 0.00038318 0.043393 2.6613E-05 0.66816 0.00040979 613.3085928729292 83.071 0.27309 82.574 82.425 82.698 -0.49751 17 10 2 0 0 0 0.62068 1 45472 45472 10.074 3.3508 1 1046500 43756 9562 28998 29731 51561 51561 -0.0006632642200656846 NYIMKIHNF 9 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ NYIM(1)KIHNF NYIM(68)KIHNF 0 0 1 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2996215820312 2 598.300059 1194.58556 -0.15231 -9.1124E-05 0.51507 0.00030816 0.36276 0.00021704 598.3000693093289 37.252 0.22101 36.981 36.846 37.067 -0.27133 20 8 3 0 0 0 0.015445 1 19562 19562 68.081 48.824 1 4120800 43757 1915 28999 29732 51562 51562 320 -0.003945255087955957 NYIMKIHNF 9 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ NYIM(1)KIHNF NYIM(85)KIHNF 0 0 1 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.30029296875 2 598.300059 1194.58556 -0.37813 -0.00022623 0.44355 0.00026537 0.06542 3.9141E-05 598.3004358594825 36.874 0.25907 36.895 36.767 37.026 0.021545 26 11 3 0 0 0 0.0090948 1 19542 19542 85.272 61.251 1 3807700 43758 1915 28999 29732 51563 51563 320 -0.003945255087955957 NYIMKIHNF 9 Oxidation (M) _NYIM(Oxidation (M))KIHNF_ NYIM(1)KIHNF NYIM(92)KIHNF 0 0 1 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3003540039062 2 598.300059 1194.58556 -0.36012 -0.00021546 -0.29513 -0.00017658 -0.65526 -0.00039204 598.3001919036578 41.32 0.32133 36.713 36.547 36.868 -4.6079 37 20 2 0 0 0 0.0082661 1 24862 24862 92.491 56.364 1 24603000 43759 1915 28999 29732 51564 51564 320 -0.003945255087955957 NYIMKIHNF 9 Unmodified _NYIMKIHNF_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2051391601562 3 393.870826 1178.59065 NaN NaN NaN NaN NaN NaN NaN 45.455 1 45.427 44.927 45.927 -0.028011 0 0 0 0.080768 1 24420 24420 36.506 29.404 1 43760 1915 28999 29733 51565 51565 0.008497783538132353 NYIMKIHNF 9 Unmodified _NYIMKIHNF_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.8712463378906 3 393.870826 1178.59065 1.3582 0.00053494 -0.3166 -0.0001247 1.0416 0.00041024 393.870787871544 50.278 0.41349 44.739 44.531 44.944 -5.5391 95 26 5 0 0 0 0.042911 2 31542 31407;31542 36.506 28.062 1 98401000 43761 1915 28999 29733 51566;51567 51567 0.008497783538132353 NYIMKIHNF 9 Unmodified _NYIMKIHNF_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3038330078125 2 590.302601 1178.59065 1.0089 0.00059555 0.9589 0.00056604 1.9678 0.0011616 590.3034775013823 50.266 0.47015 44.727 44.581 45.051 -5.5391 70 30 3 0 0 0 0.010818 1 31568 31568 78.149 52.75 1 56822000 43762 1915 28999 29733 51568 51568 0.008497783538132353 NYIPAKCFSL 10 Unmodified _NYIPAKCFSL_ 0 0 0 ENSG00000034533|ENST00000264992|ASTE1;nc|ENSG00000034533|Q2TB18-2|ASTE1 ENSG00000034533|ENST00000264992|ASTE1 ENSG00000034533|ENST00000264992|ASTE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2979736328125 2 578.296985 1154.57942 4.0474 0.0023406 -0.023051 -1.333E-05 4.0243 0.0023273 578.2968232199567 98.321 0.38935 98.293 98.116 98.506 -0.028282 47 14 4 0 0 0 0.27276 2 54579 54579;54681 29.082 0.98964 1 3786600 43763 606 29000 29734 51569;51570 51569 0.008309562596878095 NYIPAKCFSL 10 Unmodified _NYIPAKCFSL_ 0 0 0 ENSG00000034533|ENST00000264992|ASTE1;nc|ENSG00000034533|Q2TB18-2|ASTE1 ENSG00000034533|ENST00000264992|ASTE1 ENSG00000034533|ENST00000264992|ASTE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 578.296985 1154.57942 4.0474 0.0023406 -0.023051 -1.333E-05 4.0243 0.0023273 578.2968232199567 98.321 0.38935 98.293 98.116 98.506 -0.028282 0 0 NaN 29.082 47 14 4 NaN NaN NaN NaN 0 NaN NaN 0 3786600 43764 606 29000 29734 0.008309562596878095 NYIPRFWTF 9 Unmodified _NYIPRFWTF_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3175048828125 2 622.316566 1242.61858 -0.03449 -2.1464E-05 -0.14594 -9.0818E-05 -0.18043 -0.00011228 622.3164741564116 85.91 0.27031 85.972 85.827 86.097 0.061646 28 14 3 0 0 0 0.0047067 1 47550 47550 118.07 72.369 1 78383000 43765 1365 29001 29735 51571 51571 0.006974246055506228 NYIPRFWTF 9 Unmodified _NYIPRFWTF_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3159790039062 2 622.316566 1242.61858 -0.26686 -0.00016607 0.17996 0.00011199 -0.086898 -5.4078E-05 622.3166912051624 98.874 0.19057 92.698 92.602 92.793 -6.1757 53 14 5 0 0 0 0.0087807 1 65627 65627 106.94 74.154 1 1156400000 43766 1365 29001 29735 51572 51572 0.006974246055506228 NYIPVKNGKQF 11 Unmodified _NYIPVKNGKQF_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.5232849121094 3 436.575067 1306.70337 0.16035 7.0004E-05 0.21144 9.231E-05 0.37179 0.00016231 436.5753014498994 31.509 0.19678 31.406 31.284 31.481 -0.10269 12 7 2 0 0 0 0.27675 1 16400 16400 16.275 10.491 1 1840900 43767 1664 29002 29736 51573 51573 0.062287503515108256 NYIPVKNGKQF 11 Unmodified _NYIPVKNGKQF_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.5746459960938 3 436.575067 1306.70337 8.9061E-05 3.8882E-08 -0.35863 -0.00015657 -0.35854 -0.00015653 436.5749300985657 31.372 0.2521 31.402 31.247 31.499 0.030106 18 10 2 0 0 0 0.39452 1 16443 16443 21.799 17.084 1 2904200 43768 1664 29002 29736 51574 51574 0.062287503515108256 NYIPVKNGKQF 11 Unmodified _NYIPVKNGKQF_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.575927734375 3 436.575067 1306.70337 0.92329 0.00040309 -0.34158 -0.00014913 0.58171 0.00025396 436.57463073997457 35.576 0.39552 31.383 31.188 31.584 -4.1928 58 24 3 0 0 0 0.12206 1 20633 20633 39.923 25.085 1 21303000 43769 1664 29002 29736 51575 51575 0.062287503515108256 NYIPYLTKL 9 Unmodified _NYIPYLTKL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8209838867188 2 562.82115 1123.62775 0.36932 0.00020786 -0.64862 -0.00036506 -0.2793 -0.0001572 562.8206270486145 70.409 0.37148 69.93 69.716 70.087 -0.47903 73 27 4 0 0 0 0.017075 2 38529 38430;38529 66.457 28.483 1 45143000 43770 10367 29003 29737 51576;51577 51577 0.07087773171224399 NYIPYLTKL 9 Unmodified _NYIPYLTKL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3239135742188 2 562.82115 1123.62775 0.6898 0.00038823 -0.24358 -0.00013709 0.44621 0.00025114 562.8208421371968 69.805 1.01 69.836 69.534 70.544 0.030914 134 50 6 0 0 0 0.017075 2 38284 38284;38391 66.457 28.483 1 315600000 43771 10367 29003 29737 51578;51579 51578 0.07087773171224399 NYIPYLTKL 9 Unmodified _NYIPYLTKL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8216552734375 2 562.82115 1123.62775 1.0898 0.00061335 0.074538 4.1951E-05 1.1643 0.0006553 562.8211832890988 81.743 1.8201 75.567 74.585 76.405 -6.1757 341 102 4 0 0 0 0.025842 8 53790 53149;53277;53407;53531;53665;53790;53910;54038 57.722 19.748 1 301660000 43772 10367 29003 29737 51580;51581;51582;51583;51584;51585;51586;51587 51585 0.07087773171224399 NYIPYLTKLKF 11 Unmodified _NYIPYLTKLKF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2706298828125 3 467.270984 1398.79112 0.095906 4.4814E-05 -0.36654 -0.00017127 -0.27064 -0.00012646 467.27079106008296 72.92 0.40556 72.962 72.74 73.146 0.041733 65 19 5 0 0 0 0.012228 2 40099 40099;40203 60.943 48.716 1 41499000 43773 10367 29004 29738 51588;51589 51588 0.1076795122223757 NYIPYLTKLKF 11 Unmodified _NYIPYLTKLKF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2709655761719 3 467.270984 1398.79112 0.2402 0.00011224 0.43518 0.00020335 0.67538 0.00031559 467.2711483600703 93.431 0.32851 87.255 87.084 87.412 -6.1757 76 23 5 0 0 0 0.038834 2 61776 61776;61903 44.207 33.141 1 225600000 43774 10367 29004 29738 51590;51591 51590 0.1076795122223757 NYIPYLTKLKF 11 Unmodified _NYIPYLTKLKF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.4024047851562 2 700.402838 1398.79112 -0.10742 -7.5235E-05 0.42395 0.00029694 0.31653 0.0002217 700.4029933272277 93.449 0.26236 87.274 87.133 87.395 -6.1757 47 18 3 0 0 0 0.12819 1 61806 61806 39.213 16.555 1 48278000 43775 10367 29004 29738 51592 51592 0.1076795122223757 NYIQPTISF 9 Unmodified _NYIQPTISF_ 0 0 0 REV__nc|ENSG845|O71037|ERVK-19_env REV__nc|ENSG845|O71037|ERVK-19_env MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2221069335938 2 541.779482 1081.54441 -0.27885 -0.00015107 0.033262 1.8021E-05 -0.24559 -0.00013305 541.7794056138438 48.439 0.20435 48.439 48.351 48.555 0 17 9 2 0 0 0 0.209 1 26630 26630 7.2892 2.0586 1 1877200 + 43776 30045 29005 29739 51593 51593 0.0069003672338112665 NYIRAGTLI 9 Unmodified _NYIRAGTLI_ 0 0 0 ENSG00000143418|ENST00000368954|CERS2;ENST00000482825.7_1_1:150939531-150940017:-|nuORF ENSG00000143418|ENST00000368954|CERS2 ENSG00000143418|ENST00000368954|CERS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7965698242188 2 510.795466 1019.57638 0.62123 0.00031732 0.69396 0.00035447 1.3152 0.00067179 510.7958308006336 49.979 0.24077 49.586 49.471 49.711 -0.3923 14 11 2 0 0 0 0.078314 1 26924 26924 38.176 11.292 1 2053000 43777 5510 29006 29740 51594 51594 0.06737449197191836 NYIRITSEI 9 Unmodified _NYIRITSEI_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.8040771484375 2 554.803488 1107.59242 0.22359 0.00012405 -0.26279 -0.00014579 -0.0392 -2.1748E-05 554.8033282393733 51.885 0.3689 51.885 51.71 52.079 0 47 16 4 0 0 0 0.0010329 2 28638 28638;28751 165.72 65.921 1 28503000 43778 1540 29007 29741 51595;51596 51595 0.0429311064342528 NYIRITSEI 9 Unmodified _NYIRITSEI_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8055419921875 2 554.803488 1107.59242 0.7493 0.00041571 -0.13243 -7.3471E-05 0.61687 0.00034224 554.8034975101378 52.422 0.34765 51.989 51.83 52.177 -0.43367 45 17 3 0 0 0 0.013396 2 28269 28269;28384 86.332 32.499 1 28444000 43779 1540 29007 29741 51597;51598 51597 0.0429311064342528 NYIRITSEI 9 Unmodified _NYIRITSEI_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8045043945312 2 554.803488 1107.59242 0.58324 0.00032359 0.49134 0.00027259 1.0746 0.00059618 554.8036828276623 52.087 0.23155 52.028 51.896 52.127 -0.058918 18 10 2 0 0 0 0.013396 1 28210 28210 86.332 38.583 1 2378400 43780 1540 29007 29741 51599 51599 0.0429311064342528 NYIRITSEI 9 Unmodified _NYIRITSEI_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8040161132812 2 554.803488 1107.59242 1.1005 0.00061058 0.62674 0.00034772 1.7273 0.00095829 554.8038594781804 58.3 0.91978 52.225 52.015 52.935 -6.0745 119 50 4 0 0 0 0.0088735 4 37380 37258;37380;37509;37659 125.53 53.607 1 119000000 43781 1540 29007 29741 51600;51601;51602;51603 51601 0.0429311064342528 NYIRTVTASS 10 Unmodified _NYIRTVTASS_ 0 0 0 ENSG00000187554|ENST00000642603|TLR5 ENSG00000187554|ENST00000642603|TLR5 ENSG00000187554|ENST00000642603|TLR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2919311523438 2 556.290745 1110.56694 0.85311 0.00047458 -0.22604 -0.00012574 0.62707 0.00034883 556.2910926088845 77.974 0.49113 71.798 71.566 72.058 -6.1757 39 27 2 0 0 0 0.11824 1 51082 51082 43.772 43.772 1 12167000 43782 9566 29008 29742 51604 51604 0.01607636120979805 NYISDPTIL 9 Unmodified _NYISDPTIL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2722778320312 2 518.27149 1034.52843 0.3965 0.00020549 1.4282 0.00074021 1.8247 0.00094571 518.2725293686439 66.101 0.30137 66.101 65.938 66.239 0 24 14 2 0 0 0 0.05447 1 36874 36874 43.858 16.975 1 4012200 43783 950 29009 29743 51605 51605 0.012543304864948368 NYISDPTILW 10 Unmodified _NYISDPTILW_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.3114624023438 2 611.311146 1220.60774 0.52574 0.00032139 -0.11655 -7.1246E-05 0.4092 0.00025015 611.3113103615148 88.847 0.3399 88.343 88.156 88.496 -0.50423 38 14 3 0 0 0 0.60623 2 48535 48535;48632 10.824 6.4947 1 1298700 43784 950 29010 29744 51606;51607 51606 0.006259774406316865 NYISEFEIF 9 Unmodified _NYISEFEIF_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2771606445312 2 581.276772 1160.53899 0.36796 0.00021389 0.35317 0.00020529 0.72113 0.00041918 581.2771483719195 95.701 0.27811 95.333 95.2 95.478 -0.36815 26 16 2 0 0 0 0.54213 1 52259 52259 7.9102 4.3137 1 369110 43785 8186 29011 29745 51608 51608 -0.034856868590850354 NYISEFEIF 9 Unmodified _NYISEFEIF_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.277587890625 2 581.276772 1160.53899 1.2001 0.00069759 -0.69717 -0.00040525 0.50293 0.00029234 581.2768256770563 100.26 0.12511 94.08 93.996 94.122 -6.1757 12 7 2 0 0 0 0.015688 1 66990 66990 85.272 52.967 1 31471000 43786 8186 29011 29745 51609 51609 -0.034856868590850354 NYISFYDHL 9 Unmodified _NYISFYDHL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2750244140625 2 586.274564 1170.53457 0.081226 4.7621E-05 -0.28297 -0.0001659 -0.20175 -0.00011828 586.2744801372728 65.723 0.37002 65.723 65.475 65.845 0 27 16 2 0 0 0 0.019303 1 36615 36615 64.236 37.968 1 4202100 43787 3760 29012 29746 51610 51610 -0.043871512820032876 NYISFYDHL 9 Unmodified _NYISFYDHL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2759399414062 2 586.274564 1170.53457 0.024327 1.4262E-05 -0.59607 -0.00034946 -0.57174 -0.0003352 586.2744464247576 66.19 0.38147 65.706 65.521 65.902 -0.48323 55 20 4 0 0 0 0.0083087 2 36101 36101;36221 97.075 57.125 1 38691000 43788 3760 29012 29746 51611;51612 51611 -0.043871512820032876 NYISFYDHL 9 Unmodified _NYISFYDHL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.2748413085938 2 586.274564 1170.53457 1.0653 0.00062456 -0.31359 -0.00018385 0.75172 0.00044071 586.2744317643 65.703 0.26256 65.703 65.583 65.845 7.6294E-06 25 12 3 0 0 0 0.0083087 1 36028 36028 97.075 45.445 1 4852100 43789 3760 29012 29746 51613 51613 -0.043871512820032876 NYISFYDHL 9 Unmodified _NYISFYDHL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2747802734375 2 586.274564 1170.53457 0.8109 0.00047541 -1.0284 -0.00060293 -0.21751 -0.00012752 586.2738788864931 75.154 1.1252 68.978 68.454 69.58 -6.1757 136 60 3 0 0 0 0.0048787 5 49341 48953;49084;49213;49341;49498 117.6 62.096 1 26603000 43790 3760 29012 29746 51614;51615;51616;51617;51618 51617 -0.043871512820032876 NYISGIQTI 9 Unmodified _NYISGIQTI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.77490234375 2 504.771657 1007.52876 0.89865 0.00045361 0.45539 0.00022987 1.354 0.00068348 504.771910001619 60.417 0.4468 60.417 60.178 60.625 0 84 19 5 0 0 0 0.019303 2 33611 33611;33721 64.236 26.085 1 141850000 43791 9729 29013 29747 51619;51620 51619 0.025297502063381216 NYISGIQTI 9 Unmodified _NYISGIQTI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7713928222656 2 504.771657 1007.52876 -0.69773 -0.0003522 0.95718 0.00048316 0.25945 0.00013096 504.77212120613876 60.951 0.38482 60.462 60.269 60.654 -0.48932 59 18 4 0 0 0 0.015445 2 33155 33155;33255 68.081 25.986 1 123330000 43792 9729 29013 29747 51621;51622 51621 0.025297502063381216 NYISGIQTI 9 Unmodified _NYISGIQTI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.77197265625 2 504.771657 1007.52876 0.4069 0.00020539 0.78346 0.00039547 1.1904 0.00060086 504.7721723442778 60.591 0.25138 60.548 60.457 60.708 -0.04351 18 12 2 0 0 0 0.024882 1 33066 33066 58.679 20.503 1 7365600 43793 9729 29013 29747 51623 51623 0.025297502063381216 NYISGIQTI 9 Unmodified _NYISGIQTI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7721557617188 2 504.771657 1007.52876 0.62804 0.00031701 -0.19163 -9.6727E-05 0.43641 0.00022029 504.77173343972845 68.103 0.6736 61.928 61.583 62.257 -6.1757 91 39 3 0 0 0 0.013041 2 44405 44405;44532 71.922 29.828 1 408140000 43794 9729 29013 29747 51624;51625 51624 0.025297502063381216 NYITAALKL 9 Unmodified _NYITAALKL_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.800537109375 2 503.800217 1005.58588 0.82761 0.00041695 0.44408 0.00022373 1.2717 0.00064068 503.80044527612637 70.498 0.60365 70.534 70.312 70.915 0.035515 58 27 4 0 0 0 0.07087 2 38762 38762;38872 39.95 13.066 1 16129000 43795 5076 29014 29748 51626;51627 51626 0.08331217482702868 NYITAALKL 9 Unmodified _NYITAALKL_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8011779785156 2 503.800217 1005.58588 1.223 0.00061616 0.67474 0.00033994 1.8978 0.0009561 503.8008850534292 86.857 0.78803 80.682 80.037 80.825 -6.1757 58 42 2 0 0 0 0.07087 1 57171 57171 39.95 13.066 1 22579000 43796 5076 29014 29748 51628 51628 0.08331217482702868 NYITPNPIFF 10 Unmodified _NYITPNPIFF_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3182373046875 2 613.316232 1224.61791 2.2909 0.001405 0.91347 0.00056025 3.2043 0.0019653 613.3169464271391 94.653 0.32724 94.667 94.492 94.819 0.014252 26 12 3 0 0 0 0.38092 1 52587 52587 22.736 4.6013 1 1817300 43797 5164 29015 29749 51629 51629 0.014585851658239335 NYITPNPIFF 10 Unmodified _NYITPNPIFF_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.318359375 2 613.316232 1224.61791 1.1416 0.00070019 1.1858 0.00072728 2.3274 0.0014275 613.3173047781962 100.23 0.16486 94.052 93.938 94.103 -6.1757 16 9 3 0 0 0 0.0034079 1 66954 66954 103.35 80.617 1 16301000 43798 5164 29015 29749 51630 51630 0.014585851658239335 NYIWALSEI 9 Unmodified _NYIWALSEI_ 0 0 0 ENSG00000164600|ENST00000297142|NEUROD6;ENSG00000162992|ENST00000295108|NEUROD1;ENSG00000171532|ENST00000302584|NEUROD2 ENSG00000164600|ENST00000297142|NEUROD6 ENSG00000164600|ENST00000297142|NEUROD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7854614257812 2 554.787307 1107.56006 0.29394 0.00016307 -2.1435 -0.0011892 -1.8496 -0.0010261 554.7852613562652 43.466 0.32472 43.466 43.28 43.605 0 50 15 4 0 0 0 0.03568 1 23656 23656 52.268 0 1 67147000 43799 7211 29016 29750 51631 51631 0.010583232404314913 NYKDLNGNVF 10 Unmodified _NYKDLNGNVF_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.290771484375 2 592.290745 1182.56694 NaN NaN NaN NaN NaN NaN NaN 44.24 1 44.24 43.74 44.74 0 0 0 0 0.29692 1 24067 24067 49.527 24.128 1 43800 3816 29017 29751 51632 51632 -0.017043638790028126 NYKDLNGNVF 10 Unmodified _NYKDLNGNVF_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2913208007812 2 592.290745 1182.56694 -0.18965 -0.00011233 -0.5127 -0.00030367 -0.70236 -0.000416 592.2904617290866 44.57 0.14403 44.255 44.164 44.308 -0.31585 13 7 2 0 0 0 0.1605 1 23789 23789 51.415 30.962 1 11353000 43801 3816 29017 29751 51633 51633 -0.017043638790028126 NYKDLNGNVF 10 Unmodified _NYKDLNGNVF_ 0 0 0 nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1 nc|ENSG00000124783|P43307-2|SSR1 nc|ENSG00000124783|P43307-2|SSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2921752929688 2 592.290745 1182.56694 0.90204 0.00053427 0.33393 0.00019778 1.236 0.00073205 592.290959412303 50.107 0.44707 44.568 44.344 44.791 -5.5391 74 28 3 0 0 0 0.020986 2 31264 31264;31403 86.332 53.546 1 77713000 43802 3816 29017 29751 51634;51635 51634 -0.017043638790028126 NYKERDTKY 9 Unmodified _NYKERDTKY_ 0 0 0 REV__ENSG00000131508|ENST00000398733|UBE2D2 REV__ENSG00000131508|ENST00000398733|UBE2D2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.2255249023438 2 608.801477 1215.5884 1.105 0.00067276 2.4255 0.0014767 3.5306 0.0021494 608.8026248253935 47.122 0.20552 47.089 46.996 47.202 -0.033421 15 10 2 0 0 0 0.19613 1 25429 25429 7.9102 0 1 5375300 + 43803 19799 29018 29752 51636 51636 -0.01076978850278465 NYKEVIGKLSY 11 Unmodified _NYKEVIGKLSY_ 0 0 0 REV__nc|ENSG00000204977|O60858-3|TRIM13 REV__nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3580932617188 2 657.358628 1312.7027 0.70772 0.00046523 0.37355 0.00024556 1.0813 0.00071079 657.358727372702 73.024 0.39841 72.548 72.318 72.717 -0.47588 48 17 4 0 0 0 0.65108 1 39910 39910 8.7454 0 1 1809500 + 43804 24209 29019 29753 51637 51637 0.05885910911820247 NYKEVIGKLSY 11 Unmodified _NYKEVIGKLSY_ 0 0 0 REV__nc|ENSG00000204977|O60858-3|TRIM13 REV__nc|ENSG00000204977|O60858-3|TRIM13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3594970703125 2 657.358628 1312.7027 0.97807 0.00064295 0.33225 0.0002184 1.3103 0.00086135 657.3589865720342 94.14 0.65987 87.965 87.622 88.282 -6.1757 93 38 3 0 0 0 0.50515 1 62450 62450 16.149 0 1 27120000 + 43805 24209 29019 29753 51638 51638 0.05885910911820247 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.2109375 3 422.876634 1265.60807 -0.17034 -7.2032E-05 -0.22653 -9.5792E-05 -0.39686 -0.00016782 422.876475918221 40.408 0.19489 40.408 40.276 40.471 0 23 9 3 0 0 0 0.57331 1 21682 21682 2.9952 0.90923 1 4945100 43806 1308 29020 29754 51639 51639 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.811767578125 2 633.811313 1265.60807 0.17834 0.00011304 0.35873 0.00022737 0.53708 0.00034041 633.8115089449626 40.801 0.28501 40.498 40.337 40.622 -0.30304 43 13 4 0 0 0 0.018061 1 21545 21545 81.89 49.105 1 41123000 43807 1308 29020 29754 51640 51640 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.8767395019531 3 422.876634 1265.60807 0.50811 0.00021487 0.18699 7.9074E-05 0.6951 0.00029394 422.8766894712408 40.797 0.32439 40.494 40.297 40.622 -0.30304 57 15 5 0 0 0 0.57331 1 21626 21626 2.9952 0.26005 1 98394000 43808 1308 29020 29754 51641 51641 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8124389648438 2 633.811313 1265.60807 0.43058 0.00027291 0.050971 3.2306E-05 0.48155 0.00030521 633.8113546067436 40.474 0.29517 40.479 40.337 40.633 0.0050545 46 13 4 0 0 0 0.015688 2 21551 21551;21656 56.177 28.548 1 30989000 43809 1308 29020 29754 51642;51643 51642 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8766784667969 3 422.876634 1265.60807 0.42533 0.00017986 0.17133 7.2451E-05 0.59666 0.00025231 422.87669613939676 40.52 0.31288 40.525 40.337 40.65 0.0050583 57 14 6 0 0 0 0.53557 1 21585 21585 5.2969 3.3905 1 72626000 43810 1308 29020 29754 51644 51644 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.8116455078125 2 633.811313 1265.60807 0.32927 0.0002087 0.38271 0.00024257 0.71198 0.00045126 633.8115662213877 45.028 0.46834 40.176 39.918 40.387 -4.852 110 30 5 0 0 0 0.0087224 3 27723 27436;27576;27723 96.111 61.709 1 302150000 43811 1308 29020 29754 51645;51646;51647 51647 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.876953125 3 422.876634 1265.60807 0.7648 0.00032341 -0.095745 -4.0488E-05 0.66905 0.00028293 422.876755334997 45.029 0.75202 40.177 39.662 40.414 -4.852 150 55 5 0 0 0 0.34134 2 27624 27480;27624 15.248 6.5031 1 493720000 43812 1308 29020 29754 51648;51649 51649 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3115234375 2 633.811313 1265.60807 0.76073 0.00048216 -0.074926 -4.7489E-05 0.6858 0.00043467 633.8112619293909 55.559 0.83548 49.638 49.256 50.092 -5.9211 72 50 2 0 0 0 0.0081 3 35400 35131;35400;35539 114.65 72.694 1 13833000 43813 1308 29020 29754 51650;51651;51652 51651 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.8771362304688 3 422.876634 1265.60807 1.1777 0.00049801 0.42985 0.00018177 1.6075 0.00067979 422.8765104568079 55.525 0.71479 49.604 49.459 50.174 -5.9211 65 42 2 0 0 0 0.49766 1 35605 35605 7.609 1.7408 1 27315000 43814 1308 29020 29754 51653 51653 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MSMS AL20221201_MKP_PDAC_01 4 633.8104858398438 2 633.811313 1265.60807 NaN NaN NaN NaN NaN NaN NaN 55.415 1 49.494 48.994 49.994 -5.9211 0 0 0 0.01742 1 35276 35276 79.596 50.515 1 43815 1308 29020 29754 51654 51654 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MSMS AL20221201_MKP_PDAC_01 4 422.8764953613281 3 422.876634 1265.60807 NaN NaN NaN NaN NaN NaN NaN 56.216 1 50.239 49.739 50.739 -5.9769 0 0 0 0.49196 1 35855 35855 16.149 7.7048 1 43816 1308 29020 29754 51655 51655 -0.014106028395417525 NYKKFYEQF 9 Unmodified _NYKKFYEQF_ 0 0 0 ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000080824|ENST00000216281|HSP90AA1 MSMS AL20221201_MKP_PDAC_01 4 633.8117065429688 2 633.811313 1265.60807 NaN NaN NaN NaN NaN NaN NaN 56.314 1 50.337 49.837 50.837 -5.9769 0 0 0 0.032269 1 35923 35923 62.573 36.305 1 43817 1308 29020 29754 51656 51656 -0.014106028395417525 NYKLTSITF 9 Unmodified _NYKLTSITF_ 0 0 0 nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260|RELCH nc|ENSG00000134444|Q9P260|RELCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7940673828125 2 543.795132 1085.57571 0.36541 0.00019871 0.034084 1.8534E-05 0.39949 0.00021724 543.7950474039159 62.057 0.29913 61.57 61.448 61.747 -0.48764 22 12 2 0 0 0 0.06294 1 33802 33802 41.84 18.691 1 7556500 43818 4608 29021 29755 51657 51657 0.036346097574551095 NYKLTSITF 9 Unmodified _NYKLTSITF_ 0 0 0 nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260|RELCH nc|ENSG00000134444|Q9P260|RELCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7954711914062 2 543.795132 1085.57571 0.27803 0.00015119 -0.88198 -0.00047962 -0.60395 -0.00032843 543.7950244590301 61.674 0.53474 61.641 61.293 61.828 -0.032787 56 26 4 0 0 0 0.018301 1 33646 33646 65.235 42.087 1 9609600 43819 4608 29021 29755 51658 51658 0.036346097574551095 NYKLTSITF 9 Unmodified _NYKLTSITF_ 0 0 0 nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260|RELCH nc|ENSG00000134444|Q9P260|RELCH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.795132 1085.57571 0.36541 0.00019871 0.034084 1.8534E-05 0.39949 0.00021724 543.7950474039159 62.057 0.29913 61.57 61.448 61.747 -0.48764 -0.035662 0.00056932 NaN 65.235 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 7556500 43820 4608 29021 29755 0.036346097574551095 NYKNESDTF 9 Unmodified _NYKNESDTF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2438354492188 2 559.24346 1116.47237 0.0090606 5.0671E-06 1.5685 0.00087718 1.5776 0.00088225 559.244531515725 23.423 0.22165 23.423 23.307 23.529 0 13 10 2 0 0 0 0.58466 1 11943 11943 2.3027 0.4585 1 662960 43821 9973 29022 29756 51659 51659 -0.08120922420994248 NYKNPDQVYL 10 Unmodified _NYKNPDQVYL_ 0 0 0 ENSG00000100749|ENST00000216639|VRK1 ENSG00000100749|ENST00000216639|VRK1 ENSG00000100749|ENST00000216639|VRK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7649536132812 2 627.311677 1252.6088 -0.098022 -6.1491E-05 -0.2091 -0.00013117 -0.30712 -0.00019266 627.3115223022696 41.884 0.24093 41.884 41.751 41.992 0 18 12 2 0 0 0 0.19064 1 22632 22632 32.786 17.947 1 3198400 43822 1872 29023 29757 51660 51660 -0.007398081904739229 NYKPPNAEEF 10 Unmodified _NYKPPNAEEF_ 0 0 0 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 ENSG00000215251|ENST00000380266|FASTKD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7849731445312 2 604.782753 1207.55095 0.28619 0.00017308 0.74936 0.0004532 1.0355 0.00062628 604.783856844203 36.74 0.38938 36.74 36.527 36.916 0 26 18 2 0 0 0 0.5933 1 19539 19539 11.495 4.7715 1 1543900 43823 10526 29024 29758 51661 51661 -0.044520701158944576 NYKRFFVSL 9 Unmodified _NYKRFFVSL_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3244018554688 2 587.324391 1172.63423 NaN NaN NaN NaN NaN NaN NaN 56.71 1 56.641 56.141 57.141 -0.068737 0 0 0 0.348 1 30857 30857 30.637 19.837 1 43824 1335 29025 29759 51662 51662 0.05481711122615707 NYKRLWEAKQI 11 Unmodified _NYKRLWEAKQI_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MSMS AL20221201_MKP_PDAC_01 4 483.6046142578125 3 483.605137 1447.79358 NaN NaN NaN NaN NaN NaN NaN 20.063 1 17.407 16.907 17.907 -2.6564 0 0 0 0.78351 1 10669 10669 12.856 8.4498 1 + 43825 22971 29026 29760 51663 51663 0.08759799679933167 NYKSEEEFIHI 11 Unmodified _NYKSEEEFIHI_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2304077148438 3 470.229625 1407.66705 0.61303 0.00028826 -0.52576 -0.00024723 0.087268 4.1036E-05 470.2292500218938 50.002 0.30001 50.002 49.834 50.134 0 32 13 3 0 0 0 0.557 1 27524 27524 13.519 8.8027 1 11801000 43826 903 29027 29761 51664 51664 -0.020481713358549314 NYKSEEEFIHI 11 Unmodified _NYKSEEEFIHI_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.8418579101562 2 704.840799 1407.66705 0.21799 0.00015365 -0.081544 -5.7475E-05 0.13645 9.6175E-05 704.8401705395426 50.006 0.14811 50.006 49.905 50.053 0 9 6 2 0 0 0 0.17474 1 27566 27566 28.495 25.759 1 2143000 43827 903 29027 29761 51665 51665 -0.020481713358549314 NYKSEEEFIHI 11 Unmodified _NYKSEEEFIHI_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.7660522460938 3 470.229625 1407.66705 1.0609 0.00049888 -0.3565 -0.00016764 0.70443 0.00033124 470.22929325166933 55.093 0.1871 49.172 49.113 49.3 -5.9211 18 11 3 0 0 0 0.29468 1 35016 35016 7.9454 4.0995 1 11942000 43828 903 29027 29761 51666 51666 -0.020481713358549314 NYKSHHLQL 9 Unmodified _NYKSHHLQL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3017578125 2 570.301447 1138.58834 -0.15897 -9.066E-05 1.1963 0.00068227 1.0374 0.00059161 570.3018886459857 20.47 0.08169 20.47 20.449 20.531 0 9 8 2 0 0 0 0.43463 1 10305 10305 10.824 3.5347 1 545930 43829 1655 29028 29762 51667 51667 0.024590659403884274 NYKSHHLQL 9 Unmodified _NYKSHHLQL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5367431640625 3 380.536724 1138.58834 -0.38322 -0.00014583 0.12513 4.7617E-05 -0.25809 -9.8214E-05 380.53676162423903 20.301 0.21653 20.329 20.201 20.418 0.028355 36 11 4 0 0 0 0.094149 1 10250 10250 38.615 25 1 9046600 43830 1655 29028 29762 51668 51668 0.024590659403884274 NYKSHHLQL 9 Unmodified _NYKSHHLQL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5367126464844 3 380.536724 1138.58834 0.10065 3.8301E-05 -0.1232 -4.688E-05 -0.022545 -8.579E-06 380.5365668488678 20.33 0.2146 20.34 20.208 20.423 0.010551 30 12 3 0 0 0 0.51218 1 10331 10331 4.1895 0.60244 1 5372400 43831 1655 29028 29762 51669 51669 0.024590659403884274 NYKSHHLQL 9 Unmodified _NYKSHHLQL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8026123046875 2 570.301447 1138.58834 0.45103 0.00025722 -4.0299 -0.0022983 -3.5789 -0.0020411 570.29854033872 22.641 0.46398 19.863 19.722 20.186 -2.7784 84 32 3 0 0 0 0.0082548 2 12132 12132;12242 96.367 61.965 1 24207000 43832 1655 29028 29762 51670;51671 51670 0.024590659403884274 NYKSHHLQL 9 Unmodified _NYKSHHLQL_ 0 0 0 nc|ENSG00000095485|Q69YN2-3|CWF19L1;ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 nc|ENSG00000095485|Q69YN2-3|CWF19L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.536724 1138.58834 -0.45284 -0.00017232 -0.0084309 -3.2083E-06 -0.46127 -0.00017553 380.53671659017255 20.462 0.15616 20.462 20.386 20.542 0 0.08489 -8.5439E-06 NaN 38.615 70 28 3 NaN NaN NaN NaN 0 NaN NaN 0 10708000 43833 1655 29028 29762 0.024590659403884274 NYKVEPNTL 9 Unmodified _NYKVEPNTL_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2825317382812 2 539.282389 1076.55022 0.40073 0.00021611 0.42459 0.00022898 0.82533 0.00044508 539.2823205806313 42.255 0.35899 42.255 42.086 42.445 0 39 17 3 0 0 0 0.039985 1 22840 22840 49.933 17.147 1 11157000 + 43834 18921 29029 29763 51672 51672 0.01501135235048423 NYKVEPNTL 9 Unmodified _NYKVEPNTL_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7552490234375 2 539.282389 1076.55022 0.40073 0.00021611 0.42459 0.00022898 0.82533 0.00044508 539.2823205806313 42.255 0.35899 42.255 42.086 42.445 0 39 17 3 0 0 0 0.15117 1 22828 22828 29.082 3.6823 1 11157000 + 43835 18921 29029 29763 51673 51673 0.01501135235048423 NYKVEPNTL 9 Unmodified _NYKVEPNTL_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7839965820312 2 539.282389 1076.55022 1.0762 0.0005804 -1.832 -0.00098796 -0.75575 -0.00040756 539.2811445267711 47.347 0.34109 42.266 42.139 42.48 -5.0805 33 20 2 0 0 0 0.020973 2 29342 29342;29482 62.573 33.491 1 21840000 + 43836 18921 29029 29763 51674;51675 51674 0.01501135235048423 NYKVEPNTL 9 Unmodified _NYKVEPNTL_ 0 0 0 REV__ENSG00000114554|ENST00000393409|PLXNA1 REV__ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7839965820312 2 539.282389 1076.55022 1.0762 0.0005804 -1.832 -0.00098796 -0.75575 -0.00040756 539.2811445267711 47.347 0.34109 42.266 42.139 42.48 -5.0805 33 20 2 0 0 0 0.033361 1 29342 29342 62.573 34.944 1 21840000 + 43837 18921 29029 29763 51676 51676 0.01501135235048423 NYLCGIFDSS 10 Unmodified _NYLCGIFDSS_ 0 0 0 ENST00000515144.5_1_5:14488550-14489156:+|nuORF ENST00000515144.5_1_5:14488550-14489156:+|nuORF ENST00000515144.5_1_5:14488550-14489156:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7448120117188 2 559.744782 1117.47501 0.63334 0.00035451 1.5542 0.00086993 2.1875 0.0012244 559.7451677836369 90.314 0.17819 89.812 89.684 89.862 -0.50171 13 7 2 0 0 0 0.69377 1 49361 49361 3.5965 0.60125 1 397250 43838 14664 29030 29764 51677 51677 -0.07902790287698735 NYLDETQQF 9 Unmodified _NYLDETQQF_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.258544921875 2 579.259111 1156.50367 -0.032819 -1.9011E-05 0.87837 0.0005088 0.84555 0.00048979 579.2598275681281 56.299 0.45072 56.299 56.184 56.635 0 41 20 3 0 0 0 0.14602 1 31277 31277 28.487 8.0723 1 6632700 + 43839 19369 29031 29765 51678 51678 -0.06832349386900205 NYLDLIITY 9 Unmodified _NYLDLIITY_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5375671386719 3 376.537619 1126.59103 0.65665 0.00024725 -0.073384 -2.7632E-05 0.58327 0.00021962 376.5376578954259 26.14 0.37166 23.189 22.969 23.34 -2.9511 61 21 4 0 0 0 0.41742 1 14284 14284 7.609 0 1 39476000 43840 840 29032 29766 51679 51679 0.03279476554689609 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2930908203125 2 556.292756 1110.57096 0.53846 0.00029954 0.077309 4.3007E-05 0.61577 0.00034255 556.2929834822023 68.678 0.29996 68.197 68.076 68.376 -0.48071 39 13 4 0 0 0 0.044011 1 37549 37549 47.749 30.636 1 8040100 43841 3922;464 29033 29767 51680 51680 0.02009725614720992 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 556.292756 1110.57096 0.59589 0.00033149 -0.67511 -0.00037556 -0.079214 -4.4066E-05 556.7939656893203 68.191 0.12453 68.191 68.099 68.224 0 -0.12758 -0.00056171 NaN 47.749 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 268570 43842 3922;464 29033 29767 0.02009725614720992 NYLDQIAKF 9 Unmodified _NYLDQIAKF_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C nc|ENSG00000012817|Q9BY66-2|KDM5D;nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.292756 1110.57096 0.69314 0.00038559 0.18627 0.00010362 0.87941 0.00048921 556.2929053972398 68.247 0.18907 68.272 68.168 68.357 0.025146 -0.046842 0.00039665 NaN 47.749 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2461600 43843 3922;464 29033 29767 0.02009725614720992 NYLDRFLSL 9 Unmodified _NYLDRFLSL_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8058471679688 2 570.806031 1139.59751 0.6583 0.00037576 -1.297 -0.00074036 -0.63875 -0.0003646 570.8052630663382 85.356 0.38643 84.854 84.639 85.026 -0.5015 84 33 4 0 0 0 0.01085 2 46735 46633;46735 78.06 46.792 1 33377000 43844 2702 29034 29768 51681;51682 51682 0.03329414506060857 NYLDRFLSL 9 Unmodified _NYLDRFLSL_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8057861328125 2 570.806031 1139.59751 -0.18104 -0.00010334 0.30479 0.00017398 0.12375 7.064E-05 570.806146496956 84.822 0.52792 84.885 84.636 85.164 0.063179 63 22 5 0 0 0 0.00010239 3 46859 46859;46965;47090 152.89 94.207 1 672000000 43845 2702 29034 29768 51683;51684;51685 51683 0.03329414506060857 NYLDRFLSL 9 Unmodified _NYLDRFLSL_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8070678710938 2 570.806031 1139.59751 0.061892 3.5328E-05 0.52199 0.00029795 0.58388 0.00033328 570.8062472797327 98.947 0.26042 92.771 92.648 92.908 -6.1757 66 17 5 0 0 0 0.0048194 2 65693 65693;65867 117.76 61.584 1 4222699999.9999995 43846 2702 29034 29768 51686;51687 51686 0.03329414506060857 NYLDRFLSL 9 Unmodified _NYLDRFLSL_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1141.6044921875 1 1140.60479 1139.59751 -0.17614 -0.00020091 0.37772 0.00043083 0.20158 0.00022992 1140.6050300945462 98.947 0.13902 92.771 92.702 92.841 -6.1757 20 9 3 0 0 0 0.01958 1 65732 65732 63.961 38.561 1 161470000 43847 2702 29034 29768 51688 51688 0.03329414506060857 NYLDRFLSL 9 Unmodified _NYLDRFLSL_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.806031 1139.59751 1.7957 0.001025 1.2623 0.00072051 3.058 0.0017455 570.8070548461274 93.076 0.18792 93.099 93.026 93.214 0.022987 0.16365 0.00080096 NaN 117.76 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1024000 43848 2702 29034 29768 0.03329414506060857 NYLDVATFL 9 Unmodified _NYLDVATFL_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2747802734375 2 528.274032 1054.53351 0.29709 0.00015695 -0.18755 -9.9078E-05 0.10954 5.7867E-05 528.2737355947887 96.046 0.34079 95.741 95.574 95.915 -0.30472 39 18 3 0 0 0 0.39863 1 52496 52496 12.532 3.1841 1 1213200 43849 2874 29035 29769 51689 51689 0.008426343491009902 NYLFVCSCPKC 11 Unmodified _NYLFVCSCPKC_ 0 0 0 ENSG00000135632|ENST00000389501|SMYD5 ENSG00000135632|ENST00000389501|SMYD5 ENSG00000135632|ENST00000389501|SMYD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.7789306640625 2 638.779787 1275.54502 -0.24335 -0.00015545 -2.8858 -0.0018434 -3.1292 -0.0019988 638.7785210507802 41.659 0.12796 41.657 41.573 41.701 -0.0017929 10 5 3 0 0 0 0.16515 1 22270 22270 34.932 0.82963 1 3887900 43850 4727 29036 29770 51690 51690 -0.0817295121510142 NYLFVCSCPKC 11 Unmodified _NYLFVCSCPKC_ 0 0 0 ENSG00000135632|ENST00000389501|SMYD5 ENSG00000135632|ENST00000389501|SMYD5 ENSG00000135632|ENST00000389501|SMYD5 MSMS AL20221201_MKP_PDAC_01 4 638.7793579101562 2 638.779787 1275.54502 NaN NaN NaN NaN NaN NaN NaN 46.138 1 41.183 40.683 41.683 -4.9549 0 0 0 0.32157 1 28447 28447 32.037 5.1538 1 43851 4727 29036 29770 51691 51691 -0.0817295121510142 NYLGAIESWV 10 Unmodified _NYLGAIESWV_ 0 0 0 nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2;ENST00000495746.5_1_1:119575954-119683267:-|nuORF nc|ENSG00000116874|Q9UGM6-2|WARS2;ENST00000495746.5_1_1:119575954-119683267:-|nuORF ENST00000495746.5_1_1:119575954-119683267:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.289306640625 2 576.290214 1150.56587 0.39625 0.00022835 -1.1354 -0.00065433 -0.73917 -0.00042598 576.2893687209898 76.726 0.4031 70.55 70.316 70.719 -6.1757 43 20 3 0 0 0 0.1899 1 50098 50098 34.932 6.4376 1 22589000 43852 3264;14358 29037 29771 51692 51692 -0.00338578247942678 NYLGQYGHF 9 Unmodified _NYLGQYGHF_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|272|2|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|319|3|anti-sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|128|2|anti-sense;chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|31;chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|38;chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|33 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|272|2|anti-sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|272|2|anti-sense MSMS AL20221201_MKP_PDAC_01 4 549.7591552734375 2 549.753798 1097.49304 NaN NaN NaN NaN NaN NaN NaN 68.783 1 62.607 62.107 63.107 -6.1757 0 0 0 0.6032 1 44908 44908 12.532 0 1 43853 84 29038 29772 51693 51693 -0.051802872506641506 NYLHHSPV 8 Unmodified _NYLHHSPV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7423095703125 2 483.743234 965.471915 -0.21232 -0.00010271 -0.31869 -0.00015417 -0.53101 -0.00025687 483.74301260392275 41.644 0.13387 41.337 41.259 41.392 -0.30682 9 5 2 0 0 0 0.40035 1 22098 22098 44.407 0 1 6293400 43854 9426 29039 29773 51694 51694 -0.01220252559517121 NYLHHSPV 8 Unmodified _NYLHHSPV_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7437744140625 2 483.743234 965.471915 0.69142 0.00033447 0.27478 0.00013292 0.9662 0.00046739 483.7435392415985 46.01 0.29989 41.055 40.908 41.208 -4.9549 32 19 2 0 0 0 0.40035 1 28343 28343 44.407 0 1 16542000 43855 9426 29039 29773 51695 51695 -0.01220252559517121 NYLHLDYNF 9 Unmodified _NYLHLDYNF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.780029296875 2 599.780013 1197.54547 0.1715 0.00010286 0.27876 0.00016719 0.45026 0.00027006 599.7804368382702 67.053 0.19651 67.053 66.912 67.108 0 13 8 2 0 0 0 0.25681 1 37367 37367 19.257 15.313 1 702490 43856 8403 29040 29774 51696 51696 -0.04539748907723151 NYLHLDYNF 9 Unmodified _NYLHLDYNF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7803344726562 2 599.780013 1197.54547 0.51755 0.00031042 0.85563 0.00051319 1.3732 0.00082361 599.7805647248013 67.514 0.57406 67.032 66.634 67.208 -0.48218 75 25 4 0 0 0 0.047788 1 36919 36919 45.7 33.459 1 8300500 43857 8403 29040 29774 51697 51697 -0.04539748907723151 NYLHLDYNF 9 Unmodified _NYLHLDYNF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20221201_MKP_PDAC_01 4 599.7886352539062 2 599.780013 1197.54547 NaN NaN NaN NaN NaN NaN NaN 78.146 1 71.97 71.47 72.47 -6.1757 0 0 0 0.044471 1 51140 51140 60.074 35.083 1 43858 8403 29040 29774 51698 51698 -0.04539748907723151 NYLHLDYNF 9 Unmodified _NYLHLDYNF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000573716.1_1_17:1581802-1582496:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 599.780013 1197.54547 0.52743 0.00031634 2.1013 0.0012603 2.6288 0.0015767 599.7814826507785 67.026 0.36868 67.044 66.713 67.082 0.018036 0.0010077 0.0012444 NaN 45.7 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2192900 43859 8403 29040 29774 -0.04539748907723151 NYLHQWTCL 9 Unmodified _NYLHQWTCL_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1878051757812 3 393.186814 1176.53861 0.1374 5.4024E-05 1.3831 0.00054383 1.5205 0.00059785 393.1873906729274 69.821 0.29204 69.852 69.683 69.975 0.030914 31 14 3 0 0 0 0.55144 1 38407 38407 2.4985 0.41248 1 5881400 43860 9115 29041 29775 51699 51699 -0.042593850599132566 NYLHRMTTLF 10 Unmodified _NYLHRMTTLF_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3318481445312 2 648.33189 1294.64923 0.78294 0.00050761 -0.34655 -0.00022468 0.43639 0.00028293 648.3319642672634 91.361 0.27449 85.185 85.076 85.351 -6.1757 20 14 2 0 0 0 0.0024136 1 60391 60391 91.085 64.817 1 7654800 43861 2336 29042 29776 51700 51700 0.01368834928302931 NYLHRSRLNKV 11 Unmodified _NYLHRSRLNKV_ 0 0 0 REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.4025268554688 2 700.399484 1398.78442 NaN NaN NaN NaN NaN NaN NaN 73.01 1 73.051 72.551 73.551 0.041725 0 0 0 0.86919 1 40219 40219 10.8 2.644 1 + 43862 27429 29043 29777 51701 51701 0.10097451114279465 NYLKKYHNTI 10 Unmodified _NYLKKYHNTI_ 0 0 0 ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1;nc|ENSG00000162959|Q9Y316-2|MEMO1 ENSG00000162959|ENST00000404530|MEMO1 ENSG00000162959|ENST00000404530|MEMO1 MSMS AL20221201_MKP_PDAC_01 4 431.5692138671875 3 431.903183 1292.68772 NaN NaN NaN NaN NaN NaN NaN 24.74 1 21.857 21.357 22.357 -2.8831 0 0 0 0.94046 1 13489 13489 6.1918 1.4759 1 43863 6933 29044 29778 51702 51702 0.053084638344671475 NYLKSKYD 8 Unmodified _NYLKSKYD_ 0 0 0 ENST00000451650.1_1_3:46184698-46185163:-|nuORF ENST00000451650.1_1_3:46184698-46185163:-|nuORF ENST00000451650.1_1_3:46184698-46185163:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7630004882812 2 515.763832 1029.51311 0.68831 0.00035501 -1.9351 -0.00099803 -1.2467 -0.00064303 515.7629689080774 60.416 0.46417 60.416 60.116 60.581 0 52 20 3 0 0 0 0.28079 1 33707 33707 57.471 6.6163 1 12689000 43864 13526 29045 29779 51703 51703 -0.00046536310719602625 NYLLESPHRF 10 Unmodified _NYLLESPHRF_ 0 0 0 ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1 ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1 ENSG00000225190|ENST00000430334|PLEKHM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8876953125 3 425.887533 1274.64077 0.90363 0.00038484 -0.35822 -0.00015256 0.54541 0.00023228 426.2212548793519 48.837 0.23555 43.441 43.337 43.572 -5.3961 21 13 2 0 0 0 0.1028 1 30490 30490 46.022 35.123 1 33740000 43865 10582;15569 29046 29780 51704 51704 0.01443604283304012 NYLLFFFYFLF 11 Unmodified _NYLLFFFYFLF_ 0 0 0 ENST00000306442.4_1_5:122359405-122359573:-|nuORF ENST00000306442.4_1_5:122359405-122359573:-|nuORF ENST00000306442.4_1_5:122359405-122359573:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 767.3930053710938 2 767.394482 1532.77441 NaN NaN NaN NaN NaN NaN NaN 78.35 1 72.175 71.675 72.675 -6.1757 0 0 0 0.93224 1 51281 51281 5.7319 2.4505 1 43866 11630 29047 29781 51705 51705 0.02933450336331589 NYLLLLLKLSS 11 Unmodified _NYLLLLLKLSS_ 0 0 0 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.78515625 2 638.897389 1275.78022 0.62557 0.00039967 -2.636 -0.0016841 -2.0104 -0.0012845 638.8957320371205 58.576 0.19413 58.515 58.394 58.588 -0.060719 16 9 2 0 0 0 0.30452 1 31939 31939 3.2813 0.28607 1 3098400 43867 4819 29048 29782 51706 51706 0.1533654884799489 NYLLNPVNTF 10 Unmodified _NYLLNPVNTF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.8124389648438 2 597.811313 1193.60807 0.9717 0.0005809 1.3783 0.00082397 2.35 0.0014049 597.8121152700506 80.294 0.44937 79.804 79.56 80.009 -0.48932 27 17 2 0 0 0 0.2667 1 43952 43952 41.84 19.103 1 1548600 43868 9332 29049 29783 51707 51707 0.019013971604636026 NYLLNPVNTF 10 Unmodified _NYLLNPVNTF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.8533325195312 2 597.811313 1193.60807 0.73499 0.00043938 0.60443 0.00036133 1.3394 0.00080072 597.8118591597289 88.243 0.35439 82.068 81.975 82.329 -6.1757 27 19 2 0 0 0 0.14716 1 58240 58240 41.84 24.727 1 12404000 43869 9332 29049 29783 51708 51708 0.019013971604636026 NYLLNPVNTF 10 Unmodified _NYLLNPVNTF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;nc|ENSG00000185101|A1A5B4-2|ANO9;ENST00000534161.5_1_11:418373-429524:-|nuORF;ENST00000532094.5_1_11:420655-431830:-|nuORF;ENST00000526142.5_1_11:419653-429752:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 597.811313 1193.60807 0.041122 2.4583E-05 2.5926 0.0015499 2.6337 0.0015745 597.8131379064657 79.712 0.27776 79.767 79.625 79.902 0.05497 -0.018526 0.0011324 NaN 41.84 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1446800 43870 9332 29049 29783 0.019013971604636026 NYLLYVSNF 9 Unmodified _NYLLYVSNF_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7879028320312 2 566.787307 1131.56006 0.64968 0.00036823 0.099697 5.6507E-05 0.74938 0.00042474 566.7873391694885 86.559 0.43085 86.056 85.811 86.242 -0.50318 54 17 4 0 0 0 0.040683 2 47387 47283;47387 64.236 39.562 1 7554500 43871 7133 29050 29784 51709;51710 51710 -0.0004567675957787287 NYLLYVSNF 9 Unmodified _NYLLYVSNF_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7884521484375 2 566.787307 1131.56006 NaN NaN NaN NaN NaN NaN NaN 85.972 1 86.034 85.534 86.534 0.061638 0 0 0 0.035688 1 47624 47624 81.613 58.877 1 43872 7133 29050 29784 51711 51711 -0.0004567675957787287 NYLLYVSNF 9 Unmodified _NYLLYVSNF_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.787109375 2 566.787307 1131.56006 1.41 0.00079916 -0.84395 -0.00047834 0.56602 0.00032081 566.7868394598414 96.358 0.90768 90.182 89.767 90.674 -6.1757 95 54 2 0 0 0 0.0099157 4 64081 63709;63831;63957;64081 99.799 72.915 1 41028000 43873 7133 29050 29784 51712;51713;51714;51715 51715 -0.0004567675957787287 NYLNEPKL 8 Unmodified _NYLNEPKL_ 0 0 0 REV__ENSG00000064989|ENST00000392370|CALCRL REV__ENSG00000064989|ENST00000392370|CALCRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7672729492188 2 495.766374 989.518196 0.63334 0.00031399 -0.43739 -0.00021684 0.19595 9.7144E-05 495.7664076363679 60.41 0.44619 60.41 60.199 60.646 0 49 19 4 0 0 0 0.6895 1 33748 33748 18.135 2.2878 1 9119800 + 43874 17366 29051 29785 51716 51716 0.023017675519099612 NYLNEPKL 8 Unmodified _NYLNEPKL_ 0 0 0 REV__ENSG00000064989|ENST00000392370|CALCRL REV__ENSG00000064989|ENST00000392370|CALCRL MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7674865722656 2 495.766374 989.518196 0.67545 0.00033487 0.034201 1.6956E-05 0.70965 0.00035182 495.7664567459276 68.085 0.52022 61.909 61.636 62.156 -6.1757 46 30 2 0 0 0 0.17994 2 44472 44337;44472 77.984 10.64 1 32116000 + 43875 17366 29051 29785 51717;51718 51718 0.023017675519099612 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.5247192382812 3 415.524707 1243.55229 0.23053 9.5793E-05 -0.038533 -1.6011E-05 0.192 7.9781E-05 415.52473207084785 46.041 0.22993 45.711 45.577 45.807 -0.33003 34 11 4 0 0 0 0.013472 2 24578 24578;24682 53.833 41.592 1 18113000 43876 7603 29052 29786 51719;51720 51719 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5246887207031 3 415.524707 1243.55229 0.047821 1.9871E-05 0.54839 0.00022787 0.59621 0.00024774 415.52494474832724 45.783 0.4823 45.755 45.582 46.064 -0.028011 75 22 5 0 0 0 0.038285 2 24551 24551;24658 38.176 26.681 1 164490000 43877 7603 29052 29786 51721;51722 51721 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.7832641601562 2 622.783422 1243.55229 0.39357 0.00024511 -0.13195 -8.2176E-05 0.26162 0.00016293 622.7832795175209 45.78 0.24198 45.752 45.622 45.864 -0.028011 32 11 4 0 0 0 2.7377E-10 1 24581 24581 171.47 144.58 1 22026000 43878 7603 29052 29786 51723 51723 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.7857055664062 2 622.783422 1243.55229 0.83289 0.00051871 1.2757 0.00079449 2.1086 0.0013132 622.784402256896 50.747 0.52547 45.098 44.79 45.316 -5.649 74 30 3 0 0 0 6.615E-07 2 32004 31873;32004 164.52 124.57 1 184190000 43879 7603 29052 29786 51724;51725 51725 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.5257568359375 3 415.524707 1243.55229 1.1989 0.00049819 0.12157 5.0515E-05 1.3205 0.00054871 415.5248325544768 61.696 0.69266 55.521 55.228 55.921 -6.1757 50 36 2 0 0 0 0.095405 1 39813 39813 24.991 17.382 1 16995000 43880 7603 29052 29786 51726 51726 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.525146484375 3 415.524707 1243.55229 1.8928 0.00078649 -0.26973 -0.00011208 1.623 0.00067442 415.5246033880379 62.422 0.74772 56.247 56.073 56.821 -6.1757 98 38 3 0 0 0 0.010877 3 40434 40277;40434;40586 60.074 43.925 1 30179000 43881 7603 29052 29786 51727;51728;51729 51728 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MSMS AL20221201_MKP_PDAC_01 4 415.5256652832031 3 415.524707 1243.55229 NaN NaN NaN NaN NaN NaN NaN 62.238 1 56.062 55.562 56.562 -6.1757 0 0 0 0.050352 1 40141 40141 43.772 35.617 1 43882 7603 29052 29786 51730 51730 -0.05974391236486554 NYLNHWNHF 9 Unmodified _NYLNHWNHF_ 0 0 0 ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MSMS AL20221201_MKP_PDAC_01 4 622.78466796875 2 622.783422 1243.55229 NaN NaN NaN NaN NaN NaN NaN 62.498 1 56.322 55.822 56.822 -6.1757 0 0 0 6.4648E-11 1 40330 40330 156.16 126.32 1 43883 7603 29052 29786 51731 51731 -0.05974391236486554 NYLNQNAYTA 10 Unmodified _NYLNQNAYTA_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 585.7648315429688 2 586.272552 1170.53055 0.97368 0.00057084 -3.9543 -0.0023183 -2.9806 -0.0017474 586.2699132817947 74.526 0.22728 68.35 68.306 68.534 -6.1757 16 11 2 0 0 0 0.22154 1 48826 48826 21.537 9.0054 1 12927000 43884 1022 29053 29787 51732 51732 -0.047892407756989996 NYLPAINGIVF 11 Unmodified _NYLPAINGIVF_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.8391723632812 2 610.837331 1219.66011 4.2663 0.002606 -1.4261 -0.0008711 2.8403 0.0017349 610.8367671567468 98.733 0.22334 98.705 98.61 98.833 -0.028282 16 7 3 0 0 0 0.036454 1 54855 54855 53.833 38.995 1 5811700 43885 6208;1272 29054 29788 51733 51733 0.05906560574226205 NYLPAINGIVF 11 Unmodified _NYLPAINGIVF_ 0 0 0 ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A ENSG00000152700|ENST00000402673|SAR1B;ENSG00000079332|ENST00000373241|SAR1A ENSG00000152700|ENST00000402673|SAR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.837890625 2 610.837331 1219.66011 0.61415 0.00037514 0.29694 0.00018138 0.91108 0.00055652 610.8377170104035 100.56 0.11895 94.381 94.312 94.431 -6.1757 16 7 3 0 0 0 0.088819 1 67277 67277 43.772 18.373 1 45158000 43886 6208;1272 29054 29788 51734 51734 0.05906560574226205 NYLPFIMEL 9 Unmodified _NYLPFIMEL_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5;nc|ENSG00000116750|Q9Y5K5-2|UCHL5;ENSG00000116750|ENST00000367454|UCHL5;nc|ENSG00000116750|Q9Y5K5|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.294189453125 2 570.293911 1138.57327 0.80375 0.00045837 -0.77873 -0.00044411 0.025018 1.4267E-05 570.2935517319663 101.71 0.15668 95.535 95.443 95.6 -6.1757 20 9 3 0 0 0 0.016184 1 68283 68283 67.344 44.195 1 91330000 43887 16144 29055 29789 51735 51735 0.009524380281618505 NYLPSYGTL 9 Unmodified _NYLPSYGTL_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.778564453125 2 514.258382 1026.50221 0.4286 0.00022041 -2.3325 -0.0011995 -1.9039 -0.00097908 514.2571742996334 85.685 0.1547 85.184 85.143 85.298 -0.5015 8 6 2 0 0 0 0.18521 1 46931 46931 16.942 1.0951 1 207220 43888 5100 29056 29790 51736 51736 -0.009979386849863658 NYLQKEVD 8 Unmodified _NYLQKEVD_ 0 0 0 nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7539672851562 2 504.753464 1007.49238 0.35385 0.00017861 1.0338 0.00052181 1.3876 0.00070041 504.7542555406051 22.653 0.38318 19.875 19.706 20.089 -2.7784 43 27 2 0 0 0 0.52622 3 12159 12135;12159;12270 32.305 9.5521 1 7512100 43889 5363 29057 29791 51737;51738;51739 51738 -0.011071266903741162 NYLQQIDQL 9 Unmodified _NYLQQIDQL_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7933959960938 2 567.793121 1133.57169 0.43314 0.00024594 0.17219 9.7768E-05 0.60533 0.0003437 567.7932708262316 68.933 0.30257 68.933 68.764 69.066 0 24 12 3 0 0 0 0.087258 1 38376 38376 36.044 21.206 1 1399100 43890 8304 29058 29792 51740 51740 0.010245202637634065 NYLQVVYLF 9 Unmodified _NYLQVVYLF_ 0 0 0 ENST00000461188.5_1_20:416980-417208:-|nuORF ENST00000461188.5_1_20:416980-417208:-|nuORF ENST00000461188.5_1_20:416980-417208:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2894287109375 2 579.813325 1157.6121 1.5855 0.00091932 -0.16556 -9.5993E-05 1.42 0.00082332 579.8132229924736 70.953 0.29153 70.988 70.835 71.127 0.035515 24 13 2 0 0 0 0.19891 1 39128 39128 11.64 3.7301 1 6475300 43891 13654 29059 29793 51741 51741 0.039594866541847296 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8699951171875 3 368.869814 1103.58761 0.26251 9.6831E-05 -0.02996 -1.1051E-05 0.23255 8.5779E-05 368.86981342253245 48.847 0.22783 48.475 48.369 48.597 -0.37172 28 11 3 0 0 0 0.10925 1 26237 26237 22.736 16.544 1 4022200 43892 4060 29060 29794 51742 51742 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8700256347656 3 368.869814 1103.58761 0.27477 0.00010135 0.20102 7.415E-05 0.47579 0.0001755 368.8698870678307 48.511 0.41423 48.467 48.3 48.714 -0.04369 78 20 5 0 0 0 0.068777 2 26119 26119;26221 36.127 27.382 1 277270000 43893 4060 29060 29794 51743;51744 51743 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8008422851562 2 552.801083 1103.58761 0.39612 0.00021898 -0.98353 -0.00054369 -0.5874 -0.00032472 552.8000943993541 48.509 0.47004 48.465 48.32 48.791 -0.04369 39 23 3 0 0 0 0.010818 2 26129 26129;26232 78.149 52.75 1 85856000 43894 4060 29060 29794 51745;51746 51745 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8703918457031 3 368.869814 1103.58761 1.8112 0.00066809 -0.53602 -0.00019772 1.2752 0.00047037 368.8697071662968 53.681 0.46806 47.877 47.659 48.127 -5.8042 77 29 3 0 0 0 0.045537 2 33889 33889;34031 34.402 23.602 1 92234000 43895 4060 29060 29794 51747;51748 51747 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8700256347656 3 368.869814 1103.58761 1.1535 0.0004255 -0.046877 -1.7291E-05 1.1066 0.0004082 368.86976134726825 78.792 1.0964 72.616 72.089 73.186 -6.1757 187 64 4 0 0 0 0.052168 5 51420 51295;51420;51557;51690;51819 34.402 20.787 1 120600000 43896 4060 29060 29794 51749;51750;51751;51752;51753 51750 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8018798828125 2 552.801083 1103.58761 0.53151 0.00029382 0.48844 0.00027001 1.0199 0.00056383 552.8016787448828 78.764 1.0592 72.588 72.073 73.132 -6.1757 147 62 3 0 0 0 0.0041763 5 51847 51311;51449;51582;51717;51847 120.45 88.145 1 62000000 43897 4060 29060 29794 51754;51755;51756;51757;51758 51758 0.03996271291316589 NYLRAFHAL 9 Unmodified _NYLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS AL20221201_MKP_PDAC_01 4 552.802490234375 2 552.801083 1103.58761 NaN NaN NaN NaN NaN NaN NaN 53.574 1 47.77 47.27 48.27 -5.8042 0 0 0 0.012347 1 33880 33880 88.904 62.02 1 43898 4060 29060 29794 51759 51759 0.03996271291316589 NYLRKELL 8 Unmodified _NYLRKELL_ 0 0 0 nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3158569335938 2 524.811116 1047.60768 1.0635 0.00055812 2.217 0.0011635 3.2804 0.0017216 525.3144270422628 87.461 0.70724 81.285 80.788 81.495 -6.1757 58 38 3 0 0 0 0.70102 1 57556 57556 21.747 2.4897 1 12803000 43899 2080 29061 29795 51760 51760 0.08578022231290561 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5294189453125 3 366.529458 1096.56654 -0.49072 -0.00017986 0.30208 0.00011072 -0.18865 -6.9145E-05 366.5295803831639 41.405 0.25806 41.405 41.261 41.519 0 32 12 3 0 0 0 0.08691 1 22292 22292 33.445 24.699 1 20140000 43900 8194 29062 29796 51761 51761 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2899169921875 2 549.290548 1096.56654 -0.21796 -0.00011972 -2.6484 -0.0014547 -2.8663 -0.0015744 549.2881552375502 41.404 0.40451 41.404 41.241 41.645 0 34 20 3 0 0 0 0.0087873 1 22300 22300 103.35 67.226 1 9517200 43901 8194 29062 29796 51762 51762 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5289611816406 3 366.529458 1096.56654 -0.33462 -0.00012265 0.097476 3.5728E-05 -0.23714 -8.6919E-05 366.5294710531505 41.63 0.28653 41.324 41.188 41.475 -0.30682 41 12 4 0 0 0 0.047196 1 22039 22039 41.956 25.806 1 223740000 43902 8194 29062 29796 51763 51763 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2901000976562 2 549.290548 1096.56654 -0.3392 -0.00018632 -0.097562 -5.359E-05 -0.43677 -0.00023991 549.290450202546 41.64 0.26564 41.333 41.188 41.454 -0.30682 35 11 4 0 0 0 0.001066 1 22046 22046 139.14 93.118 1 135090000 43903 8194 29062 29796 51764 51764 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5298156738281 3 366.529458 1096.56654 -0.1174 -4.303E-05 0.40791 0.00014951 0.29051 0.00010648 366.52933259204923 41.383 0.27039 41.381 41.221 41.491 -0.0017929 35 12 3 0 0 0 0.10734 1 22065 22065 23.79 3.3752 1 29894000 43904 8194 29062 29796 51765 51765 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.291259765625 2 549.290548 1096.56654 -0.045414 -2.4945E-05 -0.65902 -0.00036199 -0.70444 -0.00038694 549.2901782204236 41.388 0.24637 41.386 41.221 41.467 -0.0017929 28 11 3 0 0 0 0.0087873 1 22080 22080 103.35 73.129 1 13035000 43905 8194 29062 29796 51766 51766 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.529541015625 3 366.529458 1096.56654 NaN NaN NaN NaN NaN NaN NaN 32.141 1 32.171 31.671 32.671 0.029743 0 0 0 0.82396 1 16865 16865 2.7352 0 1 43906 8194 29062 29796 51767 51767 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5299377441406 3 366.529458 1096.56654 1.2702 0.00046555 -0.060054 -2.2011E-05 1.2101 0.00044354 366.52940611468046 46.01 0.61467 41.055 40.669 41.284 -4.9549 143 40 5 0 0 0 0.16226 2 28197 28197;28335 24.991 16.246 1 804410000 43907 8194 29062 29796 51768;51769 51768 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2909545898438 2 549.290548 1096.56654 0.584 0.00032078 -0.020893 -1.1476E-05 0.5631 0.00030931 549.2906359056987 46.01 0.78604 41.055 40.555 41.341 -4.9549 149 52 5 0 0 0 0.0090524 2 28231 28231;28369 85.642 55.417 1 438410000 43908 8194 29062 29796 51770;51771 51770 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.530029296875 3 366.529458 1096.56654 2.0123 0.00073758 0.2738 0.00010035 2.2861 0.00083794 366.52939111342283 58.57 0.55014 52.496 52.184 52.734 -6.0745 54 30 2 0 0 0 0.2143 3 37404 37404;37534;37687 15.248 8.1468 1 14180000 43909 8194 29062 29796 51772;51773;51774 51772 0.022122611917893664 NYLSHHLTI 9 Unmodified _NYLSHHLTI_ 0 0 0 nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENSG00000172239|ENST00000306846|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF nc|ENSG00000172239|Q9H074-3|PAIP1 nc|ENSG00000172239|Q9H074-3|PAIP1 MSMS AL20221201_MKP_PDAC_01 4 549.2899780273438 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 58.484 1 52.409 51.909 52.909 -6.0745 0 0 0 0.024473 1 37475 37475 72.968 40.662 1 43910 8194 29062 29796 51775 51775 0.022122611917893664 NYLSIFRKF 9 Unmodified _NYLSIFRKF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.557373046875 3 396.557236 1186.64988 0.85466 0.00033892 -0.30107 -0.00011939 0.55359 0.00021953 396.55706251853206 66.165 0.58907 66.175 65.993 66.582 0.0095596 100 29 5 0 0 0 0.03568 3 36339 36233;36339;36445 40.239 28.744 1 371260000 43911 486 29063 29797 51776;51777;51778 51777 0.06401997639636647 NYLSIFRKF 9 Unmodified _NYLSIFRKF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.33251953125 2 594.332216 1186.64988 0.85706 0.00050938 -0.28719 -0.00017069 0.56987 0.00033869 594.3320160234653 66.165 0.44501 66.175 65.993 66.438 0.0095596 79 22 5 0 0 0 0.00065891 2 36340 36235;36340 142.08 86.577 1 162660000 43912 486 29063 29797 51779;51780 51780 0.06401997639636647 NYLSIFRKF 9 Unmodified _NYLSIFRKF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5574035644531 3 396.557236 1186.64988 1.0188 0.00040403 0.10475 4.154E-05 1.1236 0.00044557 396.55719411332757 93.719 0.43436 87.543 87.334 87.769 -6.1757 108 25 5 0 0 0 0.05447 3 61945 61945;62076;62213 33.445 21.95 1 642880000 43913 486 29063 29797 51781;51782;51783 51781 0.06401997639636647 NYLSIFRKF 9 Unmodified _NYLSIFRKF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.3333740234375 2 594.332216 1186.64988 0.5404 0.00032117 0.38154 0.00022676 0.92194 0.00054794 594.3323639271887 93.727 0.42075 87.552 87.348 87.769 -6.1757 96 24 5 0 0 0 0.0024112 2 61954 61954;62077 129.77 93.645 1 276940000 43914 486 29063 29797 51784;51785 51784 0.06401997639636647 NYLSIFRKFDL 11 Unmodified _NYLSIFRKFDL_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.5945129394531 3 472.594238 1414.76089 0.84404 0.00039889 0.39484 0.0001866 1.2389 0.00058549 472.5944602378505 82.757 0.30496 82.819 82.664 82.969 0.062004 32 11 4 0 0 0 0.064626 1 45775 45775 47.724 34.868 1 7574500 43915 486 29064 29798 51786 51786 0.07009592557074029 NYLSYWWE 8 Unmodified _NYLSYWWE_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.G3149V|1|0.17|ENSG00000198838|chr15:33785839-33785839|G/T|missense_variant nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7562866210938 2 580.756007 1159.49746 NaN NaN NaN NaN NaN NaN NaN 14.582 1 14.582 14.082 15.082 0 0 0 0 0.97444 1 6944 6944 0.69038 0 1 43916 10169 29065 29799 51787 51787 -0.07590822827773991 NYLTAELEQI 10 Unmodified _NYLTAELEQI_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5409851074219 3 398.539799 1192.59757 NaN NaN NaN NaN NaN NaN NaN 26.132 1 26.159 25.659 26.659 0.026951 0 0 0 0.97302 1 13548 13548 1.7423 0.52744 1 + 43917 22907 29066 29800 51788 51788 0.008973697153805915 NYLVLFALFD 10 Unmodified _NYLVLFALFD_ 0 0 0 REV__ENSG00000058063|ENST00000323116|ATP11B REV__ENSG00000058063|ENST00000323116|ATP11B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.3145141601562 3 405.55338 1213.63831 0.098378 3.9897E-05 -1.6704 -0.00067744 -1.572 -0.00063754 405.55244306452204 53.109 0.65672 53.045 52.563 53.219 -0.063419 41 32 2 0 0 0 0.23922 1 28651 28651 3.8763 2.1341 1 1893100 + 43918 17309 29067 29801 51789 51789 0.04003755825669941 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3253173828125 2 551.324391 1100.63423 0.47061 0.00025946 -0.68552 -0.00037795 -0.21491 -0.00011849 551.3240726556277 63.733 0.25814 63.246 63.082 63.34 -0.48617 29 11 3 0 0 0 0.062454 1 34718 34718 54.774 29.374 1 8313500 43919 3341 29068 29802 51790 51790 0.08793711122621062 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3246459960938 2 551.324391 1100.63423 0.46163 0.00025451 -0.17427 -9.608E-05 0.28736 0.00015843 551.3242834606316 63.29 0.45084 63.269 63.049 63.5 -0.021614 54 22 3 0 0 0 0.044296 2 34547 34547;34656 61.357 33.729 1 100330000 43920 3341 29068 29802 51791;51792 51791 0.08793711122621062 NYLVLPNRI 9 Unmodified _NYLVLPNRI_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.324462890625 2 551.324391 1100.63423 0.92978 0.00051261 0.05484 3.0235E-05 0.98462 0.00054285 551.3241589048263 70.419 1.0184 64.243 63.862 64.88 -6.1757 141 55 3 0 0 0 0.013609 5 46303 45799;45928;46055;46181;46303 88.904 48.954 1 108880000 43921 3341 29068 29802 51793;51794;51795;51796;51797 51797 0.08793711122621062 NYLVRINEI 9 Unmodified _NYLVRINEI_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3222045898438 2 567.319306 1132.62406 0.46081 0.00026143 0.85481 0.00048495 1.3156 0.00074638 567.3197073796981 59.057 0.48575 58.566 58.391 58.876 -0.49079 65 22 3 0 0 0 0.01958 1 32284 32284 63.961 22.121 1 52257000 43922 4745 29069 29803 51798 51798 0.06305103397380662 NYLVVVSAIF 10 Unmodified _NYLVVVSAIF_ 0 0 0 REV__ENSG00000066629|ENST00000262233|EML1 REV__ENSG00000066629|ENST00000262233|EML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.814208984375 2 562.82115 1123.62775 0.6898 0.00038823 -0.24358 -0.00013709 0.44621 0.00025114 562.8208421371968 69.805 1.01 69.836 69.534 70.544 0.030914 134 50 6 0 0 0 0.18021 1 38339 38339 36.127 11.136 1 315600000 + 43923 17405 29070 29804 51799 51799 0.07087773171224399 NYLWDFHKYRR 11 Unmodified _NYLWDFHKYRR_ 0 0 0 REV__ENSG00000173548|ENST00000308527|SNX33 REV__ENSG00000173548|ENST00000308527|SNX33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 799.4046630859375 2 799.404766 1596.79498 0.11891 9.5056E-05 -2.2178 -0.0017729 -2.0989 -0.0016778 799.4032101209772 68.563 0.21596 68.563 68.463 68.679 0 15 9 2 0 0 0 0.73992 1 38208 38208 0 0 1 486900 + 43924 22735 29071 29805 51800 51800 0.02045433768694238 NYLYLQEL 8 Unmodified _NYLYLQEL_ 0 0 0 ENSG00000135686|ENST00000564996|KLHL36;nc|ENSG00000135686|Q8N4N3-2|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2730712890625 2 528.274032 1054.53351 0.29709 0.00015695 -0.18755 -9.9078E-05 0.10954 5.7867E-05 528.2737355947887 96.046 0.34079 95.741 95.574 95.915 -0.30472 39 18 3 0 0 0 0.80676 1 52402 52402 2.5775 0 1 1213200 43925 4731 29072 29806 51801 51801 0.008426343491009902 NYLYQYGCIH 10 Unmodified _NYLYQYGCIH_ 0 0 0 ENST00000478954.1_1_7:150210046-150210850:-|nuORF ENST00000478954.1_1_7:150210046-150210850:-|nuORF ENST00000478954.1_1_7:150210046-150210850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.2850341796875 2 637.287148 1272.55974 0.20427 0.00013018 -1.5714 -0.0010014 -1.3671 -0.00087124 637.2861328506382 86.137 0.22864 85.634 85.493 85.722 -0.50318 13 8 2 0 0 0 0.69064 1 47157 47157 3.9444 1.8846 1 384200 43926 14027 29073 29807 51802 51802 -0.06563419751068977 NYMEVVSLL 9 Oxidation (M) _NYM(Oxidation (M))EVVSLL_ NYM(1)EVVSLL NYM(75)EVVSLL 0 0 1 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2741088867188 2 542.273175 1082.5318 0.22118 0.00011994 0.8465 0.00045903 1.0677 0.00057897 542.2737681326415 78.388 0.6619 78.388 78.076 78.738 0 110 30 5 0 0 0 0.011968 2 43544 43544;43647 74.929 40.827 1 14587000 43927 3091 29074 29808 51803;51804 51803 539 -0.006167427311538631 NYMEVVSLL 9 Oxidation (M) _NYM(Oxidation (M))EVVSLL_ NYM(1)EVVSLL NYM(82)EVVSLL 0 0 1 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2735595703125 2 542.273175 1082.5318 0.04381 2.3757E-05 0.17976 9.7477E-05 0.22357 0.00012123 542.2734501183463 78.81 0.7852 78.324 78.084 78.87 -0.48596 114 32 5 0 0 0 0.009483 2 43300 43197;43300 81.89 56.491 1 20784000 43928 3091 29074 29808 51805;51806 51806 539 -0.006167427311538631 NYMEVVSLL 9 Oxidation (M) _NYM(Oxidation (M))EVVSLL_ NYM(1)EVVSLL NYM(48)EVVSLL 0 0 1 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.27392578125 2 542.273175 1082.5318 0.33875 0.00018369 -0.97368 -0.000528 -0.63494 -0.00034431 542.2734197367688 78.305 0.47528 78.358 78.202 78.677 0.052452 48 19 3 0 0 0 0.044011 1 43313 43313 47.749 32.91 1 4047900 43929 3091 29074 29808 51807 51807 539 -0.006167427311538631 NYMEVVSLL 9 Oxidation (M) _NYM(Oxidation (M))EVVSLL_ NYM(1)EVVSLL NYM(52)EVVSLL 0 0 1 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.275390625 2 542.273175 1082.5318 1.0555 0.00057235 1.0008 0.00054269 2.0562 0.001115 542.2743821712023 86.234 0.71471 80.058 79.777 80.492 -6.1757 94 38 4 0 0 0 0.03568 2 56736 56736;56861 52.268 29.12 1 55563000 43930 3091 29074 29808 51808;51809 51808 539 -0.006167427311538631 NYMEVVSLL 9 Unmodified _NYMEVVSLL_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.276123046875 2 534.275718 1066.53688 0.29329 0.0001567 0.78181 0.0004177 1.0751 0.0005744 534.2760009188698 93.998 0.27449 93.998 93.803 94.078 0 24 15 2 0 0 0 0.41742 1 51928 51928 11.64 4.3511 1 387470 43931 3091 29074 29809 51810 51810 0.006275611314777052 NYMEVVSLL 9 Unmodified _NYMEVVSLL_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2763061523438 2 534.275718 1066.53688 0.34597 0.00018484 0.45443 0.00024279 0.8004 0.00042764 534.275957151933 94.443 0.42592 94.022 93.81 94.235 -0.42044 77 23 5 0 0 0 0.013323 2 51620 51527;51620 71.134 42.647 1 6223900 43932 3091 29074 29809 51811;51812 51812 0.006275611314777052 NYMEVVSLL 9 Unmodified _NYMEVVSLL_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7786865234375 2 534.275718 1066.53688 1.9306 0.0010315 -1.8448 -0.00098564 0.085759 4.5819E-05 534.7762589753713 93.948 0.32186 93.964 93.838 94.16 0.015594 32 12 4 0 0 0 0.12424 1 52236 52236 30.637 14.789 1 2230600 43933 3091 29074 29809 51813 51813 0.006275611314777052 NYMEVVSLL 9 Unmodified _NYMEVVSLL_ 0 0 0 ENSG00000115159|ENST00000438166|GPD2;nc|ENSG00000115159|P43304-2|GPD2 ENSG00000115159|ENST00000438166|GPD2 ENSG00000115159|ENST00000438166|GPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2750244140625 2 534.275718 1066.53688 1.2513 0.00066855 -0.63649 -0.00034006 0.61484 0.00032849 534.2755671058173 100.15 0.28597 93.976 93.855 94.141 -6.1757 41 17 3 0 0 0 0.0088174 1 66860 66860 103.75 51.48 1 369610000 43934 3091 29074 29809 51814 51814 0.006275611314777052 NYMFENHDQ 9 Unmodified _NYMFENHDQ_ 0 0 0 nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B nc|ENSG00000141161|Q8IWX7-2|UNC45B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8265991210938 3 399.825834 1196.45567 NaN NaN NaN NaN NaN NaN NaN 58.91 1 58.91 58.41 59.41 0 0 0 0 0.85261 1 32808 32808 1.1933 0.49568 1 43935 5303 29075 29810 51815 51815 -0.13469746578584818 NYMFFLMYL 9 Unmodified _NYMFFLMYL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.2919311523438 2 621.290314 1240.56607 1.2224 0.00075946 -0.083915 -5.2136E-05 1.1385 0.00070733 621.2903253715094 63.947 0.36097 63.937 63.695 64.056 -0.010532 33 17 2 0 0 0 0.37804 1 34960 34960 13.508 0.46542 1 11213000 43936 9779 29076 29811 51816 51816 -0.044586178438976276 NYMFFLMYL 9 Unmodified _NYMFFLMYL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 621.290314 1240.56607 1.2224 0.00075946 -0.083915 -5.2136E-05 1.1385 0.00070733 621.2903253715094 63.947 0.36097 63.937 63.695 64.056 -0.010532 -0.015876 0.00012385 NaN 13.508 33 17 2 NaN NaN NaN NaN 0 NaN NaN 0 11213000 43937 9779 29076 29811 -0.044586178438976276 NYMNAAMVHI 10 2 Oxidation (M) _NYM(Oxidation (M))NAAM(Oxidation (M))VHI_ NYM(1)NAAM(1)VHI NYM(57)NAAM(57)VHI 0 0 2 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7662353515625 2 598.265358 1194.51616 -0.040287 -2.4103E-05 0.0092687 5.5451E-06 -0.031019 -1.8557E-05 598.2647825967485 37.578 0.25002 37.578 37.493 37.743 0 30 12 3 0 0 0 0.051739 1 20026 20026 57.471 38.214 1 4244100 43938 4508 29077 29812 51817 51817 821;822 -0.07331352519850043 NYMNAAMVHI 10 2 Oxidation (M) _NYM(Oxidation (M))NAAM(Oxidation (M))VHI_ 0 0 2 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3;nc|ENSG00000133318|O95197-3|RTN3;nc|ENSG00000133318|O95197-5|RTN3;nc|ENSG00000133318|O95197-4|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.265358 1194.51616 0.080002 4.7862E-05 5.3746 0.0032155 5.4546 0.0032633 598.2660110815226 37.969 0.080391 37.697 37.638 37.719 -0.27133 0.05958 0.0056797 NaN 57.471 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 729270 43939 4508 29077 29812 821;822 -0.07331352519850043 NYMPGQLTI 9 Oxidation (M) _NYM(Oxidation (M))PGQLTI_ NYM(1)PGQLTI NYM(52)PGQLTI 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7579956054688 2 526.757692 1051.50083 -0.24452 -0.0001288 -1.2693 -0.00066863 -1.5138 -0.00079743 526.7576651953605 55.816 0.65137 55.816 55.487 56.138 0 176 47 5 0 0 0 0.03568 1 31039 31039 52.268 29.532 1 46210000 43940 9187 29078 29813 51818 51818 1530 -0.0228589604539593 NYMPGQLTI 9 Oxidation (M) _NYM(Oxidation (M))PGQLTI_ NYM(1)PGQLTI NYM(71)PGQLTI 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7568359375 2 526.757692 1051.50083 -0.91143 -0.0004801 0.25389 0.00013374 -0.65754 -0.00034637 526.7577740218783 56.433 0.44117 55.948 55.654 56.095 -0.48554 58 31 2 0 0 0 0.013323 2 30517 30517;30624 71.134 42.052 1 26966000 43941 9187 29078 29813 51819;51820 51819 1530 -0.0228589604539593 NYMPGQLTI 9 Oxidation (M) _NYM(Oxidation (M))PGQLTI_ NYM(1)PGQLTI NYM(64)PGQLTI 0 0 1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7576904296875 2 526.757692 1051.50083 0.82335 0.00043371 -0.294 -0.00015487 0.52935 0.00027884 526.7575236128536 63.233 0.67216 57.058 56.719 57.391 -6.1757 107 37 4 0 0 0 0.019303 3 40837 40708;40837;40966 64.236 46.09 1 116510000 43942 9187 29078 29813 51821;51822;51823 51822 1530 -0.0228589604539593 NYMPGQLTI 9 Unmodified _NYMPGQLTI_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7605590820312 2 518.760235 1035.50592 0.21067 0.00010929 -0.2287 -0.00011864 -0.01803 -9.3534E-06 518.7606682789165 66.899 0.35349 66.416 66.216 66.569 -0.48323 47 16 4 0 0 0 0.022193 1 36518 36518 61.357 44.415 1 4466900 43943 9187 29078 29814 51824 51824 -0.010415921827643615 NYMPGQLTI 9 Unmodified _NYMPGQLTI_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2613525390625 2 518.760235 1035.50592 0.89047 0.00046194 -0.26496 -0.00013745 0.62551 0.00032449 518.7602428106926 73.178 0.56397 67.002 66.699 67.263 -6.1757 74 27 3 0 0 0 0.0082485 3 47720 47720;47839;47961 96.285 72.264 1 136430000 43944 9187 29078 29814 51825;51826;51827 51825 -0.010415921827643615 NYMPGQLTI 9 Unmodified _NYMPGQLTI_ 0 0 0 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 ENSG00000183742|ENST00000400331|MACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1037.239135742188 1 1036.51319 1035.50592 0.63288 0.00065599 -1.3611 -0.0014108 -0.72826 -0.00075486 1036.5110525067173 73.179 0.40976 67.004 66.753 67.163 -6.1757 31 19 2 0 0 0 0.0087873 1 47847 47847 103.35 67.226 1 26979000 43945 9187 29078 29814 51828 51828 -0.010415921827643615 NYMVYMFQYD 10 Unmodified _NYMVYMFQYD_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;ENST00000396856.5_1_12:6643998-6645957:+|nuORF;ENST00000503632.1_1_19:47061900-47062413:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.2811279296875 2 687.280674 1372.5468 0.28656 0.00019694 -0.49064 -0.00033721 -0.20409 -0.00014027 687.280290766751 59.888 0.28725 59.888 59.736 60.023 0 31 13 3 0 0 0 0.69917 1 33338 33338 2.9952 0.26005 1 8583300 43946 2801 29079 29815 51829 51829 -0.12457618925463976 NYNATFMGF 9 Unmodified _NYNATFMGF_ 0 0 0 ENSG00000177853|ENST00000316045|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A ENSG00000177853|ENST00000316045|ZNF518A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.8096923828125 2 532.728935 1063.44332 0.97822 0.00052113 -1.1587 -0.00061729 -0.18051 -9.6162E-05 532.7283138496389 83.65 0.31861 77.474 77.287 77.606 -6.1757 22 16 2 0 0 0 0.19613 1 55001 55001 12.532 3.1841 1 12420000 43947 8711 29080 29816 51830 51830 -0.08586738250983217 NYNAVFNLL 9 Unmodified _NYNAVFNLL_ 0 0 0 ENSG00000186532|ENST00000305513|SMYD4 ENSG00000186532|ENST00000305513|SMYD4 ENSG00000186532|ENST00000305513|SMYD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8087158203125 2 534.279649 1066.54475 0.36087 0.0001928 2.8442 0.0015196 3.2051 0.0017124 534.7837593055291 93.331 0.25194 92.874 92.728 92.98 -0.4574 16 10 2 0 0 0 0.21473 1 51009 51009 4.3292 0.38484 1 410370 43948 9483 29081 29817 51831 51831 0.014134564432424668 NYNAVFNLL 9 Unmodified _NYNAVFNLL_ 0 0 0 ENSG00000186532|ENST00000305513|SMYD4 ENSG00000186532|ENST00000305513|SMYD4 ENSG00000186532|ENST00000305513|SMYD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.28076171875 2 534.279649 1066.54475 NaN NaN NaN NaN NaN NaN NaN 92.732 1 92.762 92.262 93.262 0.030197 0 0 0 0.096036 1 51566 51566 44.407 27.465 1 43949 9483 29081 29817 51832 51832 0.014134564432424668 NYNDRYDEI 9 Unmodified _NYNDRYDEI_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.2586059570312 2 601.259642 1200.50473 -1.3467 -0.00080972 -1.1513 -0.00069223 -2.498 -0.001502 601.2595136677154 32.56 0.39758 32.56 32.316 32.714 0 58 23 4 0 0 0 0.012228 1 17012 17012 74.2 43.563 1 26878000 43950 5914 29082 29818 51833 51833 -0.08750135017999128 NYNDRYDEI 9 Unmodified _NYNDRYDEI_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF;ENST00000429766.1_1_7:96830042-96830234:-|nuORF;ENST00000541658.2_1_14:35704472-35704841:-|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2599487304688 2 601.259642 1200.50473 0.50653 0.00030455 0.021783 1.3097E-05 0.52831 0.00031765 601.2597581156728 37.077 0.42152 32.793 32.585 33.007 -4.2835 62 25 3 0 0 0 0.0093064 2 21767 21641;21767 83.429 49.027 1 37071000 43951 5914 29082 29818 51834;51835 51835 -0.08750135017999128 NYNEALVP 8 Unmodified _NYNEALVP_ 0 0 0 REV__nc|ENSG00000091513|P02787|TF REV__nc|ENSG00000091513|P02787|TF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2306213378906 2 460.229625 918.444697 NaN NaN NaN NaN NaN NaN NaN 76.614 1 76.614 76.114 77.114 0 0 0 0 0.96606 1 42594 42594 7.2892 1.5288 1 + 43952 17893 29083 29819 51836 51836 -0.017787808905723068 NYNEKIYEL 9 Unmodified _NYNEKIYEL_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2933959960938 2 593.292953 1184.57135 0.0915 5.4286E-05 -0.99699 -0.00059151 -0.90549 -0.00053722 593.2927599445756 46.83 0.54113 46.83 46.481 47.022 0 95 25 5 0 0 0 0.011211 2 25577 25577;25687 93.166 51.326 1 159000000 43953 1014 29084 29820 51837;51838 51837 -0.013548994561006111 NYNEKIYEL 9 Unmodified _NYNEKIYEL_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.294677734375 2 593.292953 1184.57135 NaN NaN NaN NaN NaN NaN NaN 47.128 1 46.791 46.291 47.291 -0.33664 0 0 0 0.083147 1 25256 25256 60.074 23.947 1 43954 1014 29084 29820 51839 51839 -0.013548994561006111 NYNEKIYEL 9 Unmodified _NYNEKIYEL_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2926635742188 2 593.292953 1184.57135 0.48631 0.00028852 0.15703 9.3165E-05 0.64334 0.00038169 593.2929493869624 52.397 0.45226 46.662 46.422 46.874 -5.7345 74 25 4 0 0 0 0.0098373 2 32974 32974;33090 96.936 38.257 1 247090000 43955 1014 29084 29820 51840;51841 51840 -0.013548994561006111 NYNEKIYEL 9 Unmodified _NYNEKIYEL_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MSMS AL20221201_MKP_PDAC_01 4 593.2938232421875 2 593.292953 1184.57135 NaN NaN NaN NaN NaN NaN NaN 52.609 1 46.874 46.374 47.374 -5.7345 0 0 0 0.014626 1 33208 33208 103.42 53.486 1 43956 1014 29084 29820 51842 51842 -0.013548994561006111 NYNEKIYEL 9 Unmodified _NYNEKIYEL_ 0 0 0 nc|ENSG00000070010|Q92890-3|UFD1;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENST00000466373.1_1_22:19439515-19452862:-|nuORF nc|ENSG00000070010|Q92890-3|UFD1 nc|ENSG00000070010|Q92890-3|UFD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 593.292953 1184.57135 1.143 0.00067811 -1.3829 -0.00082045 -0.23992 -0.00014234 593.2926438085271 46.777 0.16272 46.744 46.693 46.856 -0.033417 -0.001554 -0.001229 NaN 96.936 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1626500 43957 1014 29084 29820 -0.013548994561006111 NYNELMVDRYL 11 Unmodified _NYNELMVDRYL_ 0 0 0 REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540 REV__nc|ENSG00000171817|Q8NDQ6-2|ZNF540 MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.3434448242188 2 715.342652 1428.67075 0.38644 0.00027644 -0.12507 -8.9466E-05 0.26137 0.00018697 715.3425540968732 56.345 0.51341 50.368 50.118 50.632 -5.9769 82 29 4 0 0 0 0.5229 1 36126 36126 15.248 0 1 79357000 + 43958 22606 29085 29821 51843 51843 -0.026438248336262404 NYNFDFRSW 9 Unmodified _NYNFDFRSW_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000468037.1_1_6:31660724-31670409:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.7758178710938 2 624.775262 1247.53597 0.70003 0.00043736 0.57296 0.00035797 1.273 0.00079533 624.7753329010615 69.138 0.18047 69.169 69.093 69.273 0.030914 19 8 3 0 0 0 0.040683 1 38016 38016 49.554 31.408 1 2114800 43959 16507 29086 29822 51844 51844 -0.07789517193236861 NYNGDPKDDF 10 Unmodified _NYNGDPKDDF_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.2567749023438 2 592.746367 1183.47818 1.0103 0.00059888 -0.16187 -9.5945E-05 0.84848 0.00050293 592.7461386896556 81.227 0.56773 81.287 80.966 81.533 0.059929 90 21 6 0 0 0 0.23862 1 44804 44804 3.9444 0 1 11393000 43960 16604 29087 29823 51845 51845 -0.10621823909332306 NYNIEDFADL 10 Unmodified _NYNIEDFADL_ 0 0 0 nc|ENSG00000172379|Q9HBZ2-2|ARNT2;ENSG00000172379|ENST00000303329|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 nc|ENSG00000172379|Q9HBZ2-2|ARNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2733154296875 2 607.272218 1212.52988 -0.32536 -0.00019758 1.0209 0.00061999 0.69558 0.00042241 607.2728389512532 77.041 0.38136 76.562 76.365 76.746 -0.47945 50 16 4 0 0 0 0.60623 1 42125 42125 10.824 1.4408 1 6920200 43961 8210 29088 29824 51846 51846 -0.06788080215414993 NYNLFLVAAHE 11 Unmodified _NYNLFLVAAHE_ 0 0 0 ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8 ENST00000528662.6_1_11:102584081-102593757:-|nuORF ENST00000528662.6_1_11:102584081-102593757:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8292236328125 2 645.827495 1289.64044 0.1733 0.00011192 2.1883 0.0014133 2.3616 0.0015252 645.828842727477 58.052 0.26975 57.563 57.41 57.68 -0.48974 28 12 3 0 0 0 0.50515 1 31543 31543 16.149 1.1919 1 2003800 43962 3350 29089 29825 51847 51847 0.007201845634881465 NYNNQSSNF 9 Unmodified _NYNNQSSNF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.22509765625 2 544.225602 1086.43665 -0.31651 -0.00017225 -0.13193 -7.1801E-05 -0.44845 -0.00024406 544.2254802867791 25.501 0.54613 25.501 25.128 25.674 0 58 26 3 0 0 0 0.023164 3 13020 12921;13020;13122 60.39 45.808 1 4547700 43963 74 29090 29826 51848;51849;51850 51849 -0.10310959877983805 NYNPAQQAF 9 Unmodified _NYNPAQQAF_ 0 0 0 nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-3|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 nc|ENSG00000111596|Q9NZN8-5|CNOT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7442626953125 2 526.743431 1051.47231 0.94546 0.00049801 -0.098801 -5.2043E-05 0.84666 0.00044597 526.7434328549455 49.771 0.26727 44.231 44.109 44.377 -5.5391 26 16 2 0 0 0 0.0082281 1 31090 31090 92.822 69.674 1 15393000 43964 2796 29091 29827 51851 51851 -0.05136877630343406 NYNQHAMVF 9 Oxidation (M) _NYNQHAM(Oxidation (M))VF_ NYNQHAM(1)VF NYNQHAM(44)VF 0 0 1 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2496948242188 2 570.250566 1138.48658 -0.95493 -0.00054455 0.68365 0.00038985 -0.27128 -0.0001547 570.2509945311238 32.522 0.18488 32.522 32.454 32.639 0 16 11 2 0 0 0 0.052168 1 17037 17037 44.407 27.465 1 4477000 43965 5923 29092 29828 51852 51852 1062 -0.07712548473705283 NYNQHAMVFF 10 Oxidation (M) _NYNQHAM(Oxidation (M))VFF_ NYNQHAM(1)VFF NYNQHAM(78)VFF 0 0 1 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.7847900390625 2 643.784773 1285.55499 0.17533 0.00011287 -0.19186 -0.00012352 -0.016534 -1.0644E-05 643.7848729222137 53.118 0.38282 52.666 52.476 52.859 -0.45173 59 19 4 0 0 0 0.017277 2 28771 28662;28771 78.149 60.003 1 10459000 43966 5923 29093 29829 51853;51854 51854 1062 -0.07636303893855256 NYNQHAMVFF 10 Oxidation (M) _NYNQHAM(Oxidation (M))VFF_ NYNQHAM(1)VFF NYNQHAM(52)VFF 0 0 1 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.286376953125 2 643.784773 1285.55499 0.72964 0.00046973 0.080953 5.2117E-05 0.81059 0.00052185 643.7847697080987 52.742 0.34133 52.679 52.522 52.863 -0.063423 27 16 2 0 0 0 0.074936 1 28576 28576 52.268 46.536 1 3999600 43967 5923 29093 29829 51855 51855 1062 -0.07636303893855256 NYNQHAMVFF 10 Oxidation (M) _NYNQHAM(Oxidation (M))VFF_ NYNQHAM(1)VFF NYNQHAM(85)VFF 0 0 1 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.7848510742188 2 643.784773 1285.55499 0.54375 0.00035006 -0.65114 -0.00041919 -0.10739 -6.9134E-05 643.7845573648852 57.833 0.31846 51.805 51.569 51.888 -6.0275 26 17 2 0 0 0 0.01132 1 36935 36935 85.272 62.536 1 41307000 43968 5923 29093 29829 51856 51856 1062 -0.07636303893855256 NYNQHAMVFF 10 Unmodified _NYNQHAMVFF_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MSMS AL20221201_MKP_PDAC_01 4 635.7872314453125 2 635.787315 1269.56008 NaN NaN NaN NaN NaN NaN NaN 70.079 1 63.903 63.403 64.403 -6.1757 0 0 0 0.034324 1 45776 45776 61.357 38.621 1 43969 5923 29093 29830 51857 51857 -0.06392000031223688 NYNRAFQVW 9 Unmodified _NYNRAFQVW_ 0 0 0 nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 nc|ENSG00000143036|Q8N4M1-5|SLC44A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2940673828125 2 599.293622 1196.57269 -0.18325 -0.00010982 -0.26463 -0.00015859 -0.44788 -0.00026841 599.29377827176 56.438 0.18967 56.37 56.248 56.438 -0.068737 14 9 2 0 0 0 0.012148 1 30697 30697 74.423 49.023 1 3450900 43970 5458 29094 29831 51858 51858 -0.017732205766606057 NYPDEFTKL 9 Unmodified _NYPDEFTKL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.76904296875 2 563.774396 1125.53424 0.80294 0.00045268 -2.5861 -0.001458 -1.7831 -0.0010053 563.7729759612101 51.058 0.27637 51.058 50.978 51.254 0 44 13 4 0 0 0 0.18144 2 28169 28169;28278 24.991 10.153 1 71102000 43971 16480 29095 29832 51859;51860 51859 -0.02350571001852586 NYPDEFTKL 9 Unmodified _NYPDEFTKL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7742309570312 2 563.774396 1125.53424 1.1722 0.00066084 0.25495 0.00014373 1.4271 0.00080457 563.7745185869886 57.447 0.45335 51.42 51.166 51.619 -6.0275 58 23 3 0 0 0 0.021948 2 36658 36658;36780 61.602 30.965 1 118190000 43972 16480 29095 29832 51861;51862 51861 -0.02350571001852586 NYPDNVVFKF 10 Unmodified _NYPDNVVFKF_ 0 0 0 ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8117065429688 2 621.811313 1241.60807 0.041586 2.5858E-05 1.0733 0.00066737 1.1149 0.00069323 621.8119599331388 69.264 0.77811 68.783 68.443 69.221 -0.48071 74 33 3 0 0 0 0.39689 2 37814 37814;37924 24.991 18.785 1 7424700 43973 8346 29096 29833 51863;51864 51863 -0.003066028395323883 NYPDNVVFKF 10 Unmodified _NYPDNVVFKF_ 0 0 0 ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8118286132812 2 621.811313 1241.60807 0.56374 0.00035054 0.13182 8.197E-05 0.69556 0.00043251 621.811066105829 75.876 0.82846 69.7 69.194 70.023 -6.1757 96 44 3 0 0 0 0.1887 4 49546 49426;49546;49668;49801 47.594 28.337 1 18535000 43974 8346 29096 29833 51865;51866;51867;51868 51866 -0.003066028395323883 NYPDNVVFKF 10 Unmodified _NYPDNVVFKF_ 0 0 0 ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC ENSG00000173599|ENST00000393960|PC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 621.811313 1241.60807 0.50123 0.00031167 1.2285 0.00076388 1.7297 0.0010755 621.8118672414388 69.852 0.50196 69.883 69.707 70.209 0.030914 0.091366 0.0010538 NaN 40.239 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2897000 43975 8346 29096 29833 -0.003066028395323883 NYPEEFEKL 9 Unmodified _NYPEEFEKL_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.779052734375 2 584.779679 1167.5448 0.25996 0.00015202 -0.47805 -0.00027955 -0.21809 -0.00012753 584.7793134321789 50.115 0.34172 50.115 49.966 50.308 0 56 15 5 0 0 0 0.025842 2 27568 27568;27683 57.722 30.838 1 41661000 43976 7704 29097 29834 51869;51870 51869 -0.0322658834743379 NYPEEFEKL 9 Unmodified _NYPEEFEKL_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2833862304688 2 584.779679 1167.5448 0.31539 0.00018444 1.283 0.00075026 1.5984 0.0009347 584.779613683723 56.23 0.51443 50.253 50.067 50.581 -5.9769 67 29 3 0 0 0 0.036857 2 35779 35779;35909 51.63 24.746 1 87570000 43977 7704 29097 29834 51871;51872 51871 -0.0322658834743379 NYPETLGRLLI 11 Unmodified _NYPETLGRLLI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8674926757812 2 644.86662 1287.71869 -0.50889 -0.00032817 0.2521 0.00016257 -0.25679 -0.00016559 644.8667125714874 78.387 0.50702 77.901 77.632 78.139 -0.48596 78 22 4 0 0 0 0.073778 2 42853 42853;42953 45.74 29.591 1 25240000 43978 4157;2109 29098 29835 51873;51874 51873 0.08633617148734629 NYPETLGRLLI 11 Unmodified _NYPETLGRLLI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8666381835938 2 644.86662 1287.71869 NaN NaN NaN NaN NaN NaN NaN 78.636 1 78.15 77.65 78.65 -0.48596 0 0 0 0.94002 1 43070 43070 2.4985 0.84587 1 43979 4157;2109 29098 29835 51875 51875 0.08633617148734629 NYPETLGRLLI 11 Unmodified _NYPETLGRLLI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3682861328125 2 644.86662 1287.71869 0.36238 0.00023369 -1.065 -0.00068675 -0.70257 -0.00045306 644.8659363440914 77.787 0.59204 77.839 77.585 78.177 0.052452 78 24 4 0 0 0 0.016317 3 42853 42853;42965;43099 61.09 42.717 1 151490000 43980 4157;2109 29098 29835 51876;51877;51878 51876 0.08633617148734629 NYPETLGRLLI 11 Unmodified _NYPETLGRLLI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.8671264648438 2 644.86662 1287.71869 0.95235 0.00061414 -0.40745 -0.00026275 0.5449 0.00035139 644.86636047453 94.66 0.86665 88.484 88.082 88.949 -6.1757 206 49 5 0 0 0 0.020698 5 62595 62468;62595;62714;62835;62968 57.249 41.1 1 540740000 43981 4157;2109 29098 29835 51879;51880;51881;51882;51883 51880 0.08633617148734629 NYPETLGRLLI 11 Unmodified _NYPETLGRLLI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.5287170410156 3 430.246839 1287.71869 1.1738 0.00050503 -0.75399 -0.0003244 0.41982 0.00018063 430.2462704609503 94.666 0.51093 88.49 88.219 88.73 -6.1757 43 29 2 0 0 0 0.29959 1 62793 62793 6.6599 4.2251 1 13717000 43982 4157;2109 29098 29835 51884 51884 0.08633617148734629 NYPLHPLQL 9 Unmodified _NYPLHPLQL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA;DROSHA|p.E1090K|1|0.15|ENSG00000113360|chr5:31422938-31422938|C/T|missense_variant nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.8047485351562 2 547.803291 1093.59203 -0.11055 -6.0558E-05 -0.2455 -0.00013449 -0.35605 -0.00019505 547.803376173535 61.578 0.27891 61.091 60.86 61.139 -0.48764 19 12 2 0 0 0 0.2143 1 33501 33501 21.747 5.8995 1 1521400 43983 2960 29099 29836 51885 51885 0.048977357142575784 NYPLLLLTL 9 Unmodified _NYPLLLLTL_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.32763671875 2 530.326068 1058.63758 0.76341 0.00040486 -0.29239 -0.00015506 0.47103 0.0002498 530.3257661452043 102.01 0.097237 95.838 95.78 95.877 -6.1757 11 4 3 0 0 0 0.0082281 1 68474 68474 92.822 18.399 1 11514000 43984 3762;16168 29100 29837 51886 51886 0.11060961176622186 NYPLQTVIF 9 Unmodified _NYPLQTVIF_ 0 0 0 REV__ENSG00000129048|ENST00000249887|ACKR4 REV__ENSG00000129048|ENST00000249887|ACKR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7984008789062 2 547.797675 1093.5808 0.29866 0.00016361 0.38694 0.00021196 0.6856 0.00037557 547.7978167944322 78.84 0.71968 78.84 78.509 79.229 0 129 33 5 0 0 0 0.53666 1 43994 43994 5.2307 0.47466 1 44881000 + 43985 19647 29101 29838 51887 51887 0.03774913620077314 NYPLQTVIF 9 Unmodified _NYPLQTVIF_ 0 0 0 REV__ENSG00000129048|ENST00000249887|ACKR4 REV__ENSG00000129048|ENST00000249887|ACKR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7984619140625 2 547.797675 1093.5808 0.57996 0.0003177 0.40535 0.00022205 0.9853 0.00053975 547.7978046261601 79.268 0.70557 78.782 78.461 79.167 -0.48596 125 30 6 0 0 0 0.53666 1 43600 43600 5.2307 0 1 25914000 + 43986 19647 29101 29838 51888 51888 0.03774913620077314 NYPPQYLILKL 11 Unmodified _NYPPQYLILKL_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.3954467773438 2 681.395013 1360.77547 0.023575 1.6064E-05 0.0077527 5.2827E-06 0.031327 2.1346E-05 681.3948031169446 84.595 0.32657 84.658 84.464 84.79 0.063171 22 14 2 0 0 0 0.028752 1 46764 46764 55.503 33.966 1 26007000 43987 4072 29102 29839 51889 51889 0.10951664705225994 NYPPQYLILKL 11 Unmodified _NYPPQYLILKL_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.3961791992188 2 681.395013 1360.77547 1.661 0.0011318 -1.1785 -0.00080304 0.48244 0.00032873 681.3941470002088 97.706 0.39058 91.53 91.261 91.651 -6.1757 62 24 3 0 0 0 0.01364 3 64635 64576;64635;64754 63.961 50.054 1 111770000 43988 4072 29102 29839 51890;51891;51892 51891 0.10951664705225994 NYPPYFPEL 9 Unmodified _NYPPYFPEL_ 0 0 0 ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2748413085938 2 570.274032 1138.53351 0.65082 0.00037114 0.79418 0.0004529 1.445 0.00082405 570.2745649313805 86.102 0.35195 85.599 85.393 85.745 -0.50318 21 13 2 0 0 0 0.41742 1 47106 47106 11.64 5.9084 1 353710 43989 1556 29103 29840 51893 51893 -0.030213656508976783 NYPQSVPRL 9 Unmodified _NYPQSVPRL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2901000976562 2 537.290548 1072.56654 -0.055528 -2.9835E-05 -0.97979 -0.00052643 -1.0353 -0.00055626 537.290042921619 43.791 0.2357 43.481 43.38 43.616 -0.31039 17 11 2 0 0 0 0.039985 1 23310 23310 49.933 21.446 1 28144000 43990 10015 29104 29841 51894 51894 0.03316261191821468 NYPQSVPRL 9 Unmodified _NYPQSVPRL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000574308.1_1_17:1371595-1373510:-|nuORF nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.291259765625 2 537.290548 1072.56654 0.70047 0.00037636 -0.42673 -0.00022928 0.27374 0.00014708 537.2903411732021 48.742 0.48802 43.346 43.084 43.572 -5.3961 78 28 3 0 0 0 0.018301 2 30256 30256;30390 65.235 23.395 1 159930000 43991 10015 29104 29841 51895;51896 51895 0.03316261191821468 NYPRSAQNKF 10 Unmodified _NYPRSAQNKF_ 0 0 0 REV__ENSG00000185010|ENST00000360256|F8 REV__ENSG00000185010|ENST00000360256|F8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8074951171875 2 612.809636 1223.60472 NaN NaN NaN NaN NaN NaN NaN 82.995 1 82.497 81.997 82.997 -0.49751 0 0 0 0.98914 1 45433 45433 1.8442 1.0506 1 + 43992 23462 29105 29842 51897 51897 0.001861471064557918 NYPSAFHSV 9 Unmodified _NYPSAFHSV_ 0 0 0 ENST00000553293.5_1_14:69522275-69583201:-|nuORF;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 ENST00000553293.5_1_14:69522275-69583201:-|nuORF ENST00000553293.5_1_14:69522275-69583201:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2413940429688 2 511.240524 1020.46649 0.24876 0.00012718 0.3904 0.00019959 0.63916 0.00032677 511.24082495925063 37.752 0.33679 37.752 37.569 37.905 0 33 16 3 0 0 0 0.031062 1 20100 20100 54.774 31.625 1 4706000 43993 5203 29106 29843 51898 51898 -0.04291976141996656 NYPSAFHSV 9 Unmodified _NYPSAFHSV_ 0 0 0 ENST00000553293.5_1_14:69522275-69583201:-|nuORF;nc|ENSG00000139990|Q96JK2-2|DCAF5;nc|ENSG00000139990|Q96JK2-3|DCAF5;ENSG00000139990|ENST00000341516|DCAF5 ENST00000553293.5_1_14:69522275-69583201:-|nuORF ENST00000553293.5_1_14:69522275-69583201:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2403564453125 2 511.240524 1020.46649 -0.1545 -7.8986E-05 0.59134 0.00030232 0.43684 0.00022333 511.24074199156274 38.075 0.30849 37.804 37.66 37.969 -0.27133 25 14 2 0 0 0 0.031062 1 20032 20032 54.774 35.517 1 2823200 43994 5203 29106 29843 51899 51899 -0.04291976141996656 NYPSDHLSL 9 Unmodified _NYPSDHLSL_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2499389648438 2 523.251089 1044.48762 NaN NaN NaN NaN NaN NaN NaN 44.905 1 44.905 44.405 45.405 0 0 0 0 0.26667 1 24454 24454 26.884 6.43 1 43995 6086 29107 29844 51900 51900 -0.03284010833135653 NYPSDHLSL 9 Unmodified _NYPSDHLSL_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MSMS AL20221201_MKP_PDAC_01 4 523.2506713867188 2 523.251089 1044.48762 NaN NaN NaN NaN NaN NaN NaN 50.47 1 44.931 44.431 45.431 -5.5391 0 0 0 0.04157 1 31669 31669 61.357 29.052 1 43996 6086 29107 29844 51901 51901 -0.03284010833135653 NYPVWDTQF 9 Unmodified _NYPVWDTQF_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.267578125 2 585.266739 1168.51892 0.61656 0.00036085 2.3998 0.0014045 3.0163 0.0017654 585.7700467926682 74.768 0.3567 74.292 74.02 74.376 -0.47588 24 14 2 0 0 0 0.58466 1 40954 40954 2.3027 0.24298 1 954450 43997 5967 29108 29845 51902 51902 -0.05859437799040279 NYQDKHQQI 9 Unmodified _NYQDKHQQI_ 0 0 0 REV__ENSG00000138768|ENST00000514213|USO1 REV__ENSG00000138768|ENST00000514213|USO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7857666015625 2 587.285994 1172.55744 0.3315 0.00019468 1.5133 0.00088875 1.8448 0.0010834 587.7871847034581 74.472 0.13193 74.472 74.365 74.497 0 6 5 2 0 0 0 0.21834 1 41407 41407 1.8442 1.0506 1 322000 + 43998 20363 29109 29846 51903 51903 -0.021941321645272183 NYQEDTVFF 9 Unmodified _NYQEDTVFF_ 0 0 0 nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 nc|ENSG00000105778|Q8NBF6-2|AVL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7560424804688 2 581.756204 1161.49785 -0.13393 -7.7915E-05 0.5905 0.00034353 0.45657 0.00026561 581.7560249783833 70.88 0.20068 70.88 70.841 71.041 0 22 14 2 0 0 0 0.54444 1 39490 39490 4.756 0.42677 1 1468400 43999 2363 29110 29847 51904 51904 -0.07643447898567501 NYQEVIQIF 9 Unmodified _NYQEVIQIF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000523321.5_1_8:95835614-95871872:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.298828125 2 577.298039 1152.58152 0.59043 0.00034085 -0.25579 -0.00014767 0.33464 0.00019319 577.297592447229 84.526 0.33775 84.027 83.841 84.179 -0.49962 27 15 3 0 0 0 0.45045 1 46271 46271 10.074 6.1295 1 808150 44000 7269 29111 29848 51905 51905 0.011337082691625255 NYQFVYQNL 9 Unmodified _NYQFVYQNL_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MSMS AL20221201_MKP_PDAC_01 4 594.7891235351562 2 594.787838 1187.56112 NaN NaN NaN NaN NaN NaN NaN 74.128 1 67.953 67.453 68.453 -6.1757 0 0 0 0.13831 1 48464 48464 50.855 31.598 1 44001 2442 29112 29849 51906 51906 -0.025154623906473716 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1852111816406 3 388.185802 1161.53558 0.65273 0.00025338 -0.31327 -0.00012161 0.33946 0.00013177 388.1854874450468 51.218 0.18077 51.218 51.167 51.348 0 16 7 3 0 0 0 0.46577 1 28310 28310 5.7319 3.2334 1 2124800 44002 11426 29113 29850 51907 51907 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.23486328125 2 581.775065 1161.53558 0.80579 0.00046879 -2.9514 -0.001717 -2.1456 -0.0012483 581.7733369196814 51.233 0.24259 51.233 51.15 51.393 0 15 10 2 0 0 0 0.18118 1 28283 28283 18.135 11.412 1 1753700 44003 11426 29113 29850 51908 51908 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1862487792969 3 388.185802 1161.53558 0.052938 2.055E-05 -0.34843 -0.00013526 -0.29549 -0.00011471 388.1856818491837 51.706 0.43471 51.272 51.097 51.531 -0.43367 72 22 5 0 0 0 0.1492 2 27832 27832;27943 19.257 13.525 1 160620000 44004 11426 29113 29850 51909;51910 51909 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7744750976562 2 581.775065 1161.53558 0.0060165 3.5002E-06 -0.57461 -0.00033429 -0.56859 -0.00033079 581.7745837031041 51.689 0.45252 51.256 51.079 51.531 -0.43367 66 23 4 0 0 0 0.0094915 2 27946 27842;27946 81.864 54.98 1 97949000 44005 11426 29113 29850 51911;51912 51912 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1854858398438 3 388.185802 1161.53558 -0.29646 -0.00011508 -0.014393 -5.5872E-06 -0.31085 -0.00012067 388.18576545961196 51.338 0.75045 51.284 51.047 51.797 -0.053871 117 37 5 0 0 0 0.1492 3 27801 27700;27801;27907 25.399 19.667 1 280240000 44006 11426 29113 29850 51913;51914;51915 51914 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.774658203125 2 581.775065 1161.53558 0.27135 0.00015786 -0.64123 -0.00037305 -0.36988 -0.00021519 581.7747158092506 51.343 0.4707 51.289 51.067 51.538 -0.053871 54 23 3 0 0 0 0.013472 2 27803 27702;27803 70.716 54.566 1 151310000 44007 11426 29113 29850 51916;51917 51917 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.1862487792969 3 388.185802 1161.53558 0.54571 0.00021183 0.47735 0.0001853 1.0231 0.00039714 388.18590425795264 56.127 0.47784 50.15 49.897 50.375 -5.9769 72 27 3 0 0 0 0.1492 2 35696 35696;35827 19.257 15.381 1 179480000 44008 11426 29113 29850 51918;51919 51918 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7755737304688 2 581.775065 1161.53558 0.16635 9.6781E-05 0.2207 0.0001284 0.38706 0.00022518 581.7754212238477 56.118 0.4262 50.141 49.931 50.357 -5.9769 66 24 4 0 0 0 0.0090851 2 35697 35697;35828 85.357 61.336 1 93521000 44009 11426 29113 29850 51920;51921 51920 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.1871032714844 3 388.185802 1161.53558 1.396 0.0005419 -0.062365 -2.4209E-05 1.3336 0.00051769 388.1857748029024 80.134 1.8514 73.958 72.809 74.66 -6.1757 240 107 3 0 0 0 0.1492 9 51879 51879;52012;52145;52287;52416;52544;52671;52793;52916 32.305 28.116 1 164160000 44010 11426 29113 29850 51922;51923;51924;51925;51926;51927;51928;51929;51930 51922 -0.03872892122444682 NYQGHFHLF 9 Unmodified _NYQGHFHLF_ 0 0 0 ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF ENST00000283632.4_1_2:86968058-86968091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7754516601562 2 581.775065 1161.53558 0.9552 0.00055571 -0.8661 -0.00050388 0.089095 5.1833E-05 581.7746804206237 80.057 1.5437 73.881 73.117 74.66 -6.1757 281 90 4 0 0 0 0.0083087 8 52883 52097;52238;52368;52499;52624;52756;52883;53001 101.72 72.64 1 89941000 44011 11426 29113 29850 51931;51932;51933;51934;51935;51936;51937;51938 51937 -0.03872892122444682 NYQHYKGSDF 10 Unmodified _NYQHYKGSDF_ 0 0 0 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.7774047851562 2 629.778002 1257.54145 NaN NaN NaN NaN NaN NaN NaN 73.844 1 73.368 72.868 73.868 -0.47588 0 0 0 0.97302 1 40415 40415 3.5965 0 1 44012 7296 29114 29851 51939 51939 -0.07701838401408168 NYQIGKTKV 9 Unmodified _NYQIGKTKV_ 0 0 0 nc|ENSG00000099331|Q13459-2|MYO9B;ENSG00000099331|ENST00000682292|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B nc|ENSG00000099331|Q13459-2|MYO9B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.282958984375 2 525.800749 1049.58694 1.0819 0.00056889 1.6606 0.00087317 2.7426 0.0014421 525.8020017133621 51.281 0.1617 51.281 51.208 51.369 0 9 6 2 0 0 0 0.18882 1 28295 28295 15.847 1.0089 1 1140100 44013 1694 29115 29852 51940 51940 0.06413431851638052 NYQIKYPTPS 10 Unmodified _NYQIKYPTPS_ 0 0 0 REV__nc|ENSG00000105426|Q13332-4|PTPRS REV__nc|ENSG00000105426|Q13332-4|PTPRS MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8109741210938 2 605.808771 1209.60299 0.84573 0.00051235 0.70636 0.00042792 1.5521 0.00094027 605.8099874752319 95.994 0.17756 89.818 89.73 89.907 -6.1757 17 10 2 0 0 0 0.32072 1 63621 63621 26.268 9.1552 1 7790500 + 44014 18424 29116 29853 51941 51941 0.006570932978547717 NYQKMAKLA 9 Unmodified _NYQKMAKLA_ 0 0 0 REV__ENST00000512673.1_1_17:79846815-79848630:-|nuORF REV__ENST00000512673.1_1_17:79846815-79848630:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7885131835938 2 533.789327 1065.5641 NaN NaN NaN NaN NaN NaN NaN 29.057 1 29.088 28.588 29.588 0.030106 0 0 0 0.82739 1 15148 15148 4.3292 0 1 + 44015 23365 29117 29854 51942 51942 0.03394089462517513 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.215576171875 3 404.215761 1209.62546 -0.56876 -0.0002299 0.46405 0.00018757 -0.10472 -4.2329E-05 404.21604317574423 26.297 0.37607 26.297 26.175 26.551 0 45 18 4 0 0 0 0.49272 1 13481 13481 4.897 4.897 1 12637000 44016 826 29118 29855 51943 51943 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.820068359375 2 605.820004 1209.62546 -0.7171 -0.00043443 0.36408 0.00022057 -0.35302 -0.00021387 605.8202777198773 26.294 0.17789 26.294 26.208 26.386 0 22 8 3 0 0 0 0.0082485 1 13498 13498 96.285 70.885 1 2670200 44017 826 29118 29855 51944 51944 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2162475585938 3 404.215761 1209.62546 0.38081 0.00015393 -0.14321 -5.789E-05 0.2376 9.6041E-05 404.2157175096441 26.349 0.20116 26.318 26.207 26.408 -0.031708 34 10 4 0 0 0 0.39863 1 13514 13514 17.113 10.011 1 59216000 44018 826 29118 29855 51945 51945 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.8198852539062 2 605.820004 1209.62546 0.33285 0.00020165 -0.61091 -0.0003701 -0.27805 -0.00016845 605.8196771963686 26.375 0.16753 26.343 26.224 26.392 -0.031708 20 8 3 0 0 0 0.0014543 1 13539 13539 136.33 69.877 1 14330000 44019 826 29118 29855 51946 51946 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.819091796875 2 605.820004 1209.62546 0.22777 0.00013799 -0.2945 -0.00017841 -0.066733 -4.0428E-05 605.8198912233399 26.11 0.25073 26.137 25.984 26.234 0.026951 22 11 3 0 0 0 2.6046E-06 2 13511 13511;13517 156.16 96.082 1 26794000 44020 826 29118 29855 51947;51948 51947 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5504150390625 3 404.215761 1209.62546 0.82461 0.00033332 -0.56053 -0.00022657 0.26408 0.00010675 404.2154654840637 29.069 0.42768 25.767 25.524 25.952 -3.3016 75 25 4 0 0 0 0.087258 2 16168 16168;16300 47.749 28.123 1 662670000 44021 826 29118 29855 51949;51950 51949 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8197021484375 2 605.820004 1209.62546 0.33124 0.00020067 -0.51838 -0.00031404 -0.18714 -0.00011337 605.8195692830776 29.039 0.38209 25.737 25.524 25.906 -3.3016 58 22 4 0 0 0 0.00069393 2 16178 16178;16312 141.83 95.772 1 246330000 44022 826 29118 29855 51951;51952 51951 0.02902737486147089 NYQKRFQNL 9 Unmodified _NYQKRFQNL_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 404.215761 1209.62546 -0.56876 -0.0002299 0.46405 0.00018757 -0.10472 -4.2329E-05 404.21604317574423 26.297 0.37607 26.297 26.175 26.551 0 0.050483 0.00027903 NaN 17.113 45 18 4 NaN NaN NaN NaN 0 NaN NaN 0 12637000 44023 826 29118 29855 0.02902737486147089 NYQMKYYL 8 Unmodified _NYQMKYYL_ 0 0 0 ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7684326171875 2 561.76806 1121.52157 0.57633 0.00032376 2.6744 0.0015024 3.2507 0.0018261 561.7698894442611 94.496 0.31429 94.076 93.952 94.266 -0.42044 28 17 2 0 0 0 0.80624 1 51634 51634 2.8892 0 1 538160 44024 6444 29119 29856 51953 51953 -0.034333056657260386 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2049560546875 3 372.204974 1113.59309 -0.35063 -0.00013051 0.50355 0.00018742 0.15292 5.6917E-05 372.20513109035113 29.213 0.28745 29.213 29.082 29.37 0 44 13 5 0 0 0 0.36964 1 15115 15115 13.615 11.962 1 24840000 44025 5782 29120 29857 51954 51954 0.040839500831452824 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2048950195312 3 372.204974 1113.59309 0.60792 0.00022627 -0.43198 -0.00016078 0.17594 6.5487E-05 372.20475582744206 29.161 0.21636 29.099 28.966 29.182 -0.062159 21 9 3 0 0 0 0.1773 1 15065 15065 23.79 21.055 1 18249000 44026 5782 29120 29857 51955 51955 0.040839500831452824 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8037109375 2 557.803823 1113.59309 0.81595 0.00045514 -0.23496 -0.00013106 0.58099 0.00032408 557.8037306468303 29.166 0.14338 29.104 29.039 29.182 -0.062159 9 6 2 0 0 0 0.07916 1 15091 15091 37.974 19.828 1 3728700 44027 5782 29120 29857 51956 51956 0.040839500831452824 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2044067382812 3 372.204974 1113.59309 0.046202 1.7197E-05 -0.32647 -0.00012151 -0.28027 -0.00010432 372.2046425984104 28.997 0.15961 29.027 28.967 29.127 0.030106 11 6 2 0 0 0 0.36964 1 15126 15126 9.544 7.2612 1 3586300 44028 5782 29120 29857 51957 51957 0.040839500831452824 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2056884765625 3 372.204974 1113.59309 1.4424 0.00053688 0.010223 3.805E-06 1.4526 0.00054068 372.20501329109874 32.538 0.56074 28.682 28.401 28.961 -3.8562 108 30 5 0 0 0 0.12424 3 18578 18456;18578;18696 22.658 17.361 1 192520000 44029 5782 29120 29857 51958;51959;51960 51959 0.040839500831452824 NYQNVVHKL 9 Unmodified _NYQNVVHKL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.803823 1113.59309 0.0067912 3.7881E-06 0.3554 0.00019824 0.36219 0.00020203 557.8038864723883 29.234 0.22703 29.234 29.122 29.349 0 0.065238 0.00010626 NaN 37.974 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4778800 44030 5782 29120 29857 0.040839500831452824 NYQRLFDFF 9 Unmodified _NYQRLFDFF_ 0 0 0 ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560616.5_3_15:91450651-91453805:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3048706054688 2 625.303655 1248.59276 0.33306 0.00020827 0.71834 0.00044918 1.0514 0.00065745 625.303880283402 88.683 0.26259 88.731 88.563 88.826 0.047852 23 10 3 0 0 0 0.0040067 1 49311 49311 147.06 47.26 1 24160000 44031 9837 29121 29858 51961 51961 -0.021594696367174038 NYQRLFDFF 9 Unmodified _NYQRLFDFF_ 0 0 0 ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560616.5_3_15:91450651-91453805:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3038330078125 2 625.303655 1248.59276 0.71683 0.00044824 0.080774 5.0508E-05 0.79761 0.00049875 625.3035816542971 99.486 0.15589 93.31 93.243 93.399 -6.1757 33 9 5 0 0 0 0.0085526 1 66266 66266 129.77 60.667 1 121570000 44032 9837 29121 29858 51962 51962 -0.021594696367174038 NYQRLFDFF 9 Unmodified _NYQRLFDFF_ 0 0 0 ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENST00000560616.5_3_15:91450651-91453805:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF ENST00000560192.5_1_15:91447248-91454469:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 625.303655 1248.59276 0.25362 0.00015859 1.295 0.00080979 1.5487 0.00096838 625.3043420324694 93.257 0.23992 93.257 93.147 93.387 0 -0.026384 0.0012466 NaN 129.77 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 309050 44033 9837 29121 29858 -0.021594696367174038 NYQSILEVN 9 Unmodified _NYQSILEVN_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.773681640625 2 540.272021 1078.52949 0.22612 0.00012217 -2.7403 -0.0014805 -2.5142 -0.0013583 540.7709500815029 26.104 0.13725 26.131 26.046 26.183 0.026951 10 5 3 0 0 0 0.08691 1 13540 13540 36.127 1.9397 1 2735200 + 44034 19029 29122 29859 51963 51963 -0.006634551445813486 NYQTVVIVG 9 Unmodified _NYQTVVIVG_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7754516601562 2 496.7742 991.533846 0.2428 0.00012062 0.83383 0.00041422 1.0766 0.00053484 496.7747075580724 66.706 0.26485 66.223 66.068 66.333 -0.48323 21 12 3 0 0 0 0.28047 1 36431 36431 18.135 0 1 1329100 44035 1969 29123 29860 51964 51964 0.0377405406896969 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2910766601562 2 556.292756 1110.57096 0.45289 0.00025194 -0.35644 -0.00019829 0.09645 5.3654E-05 556.2924410536548 77.052 0.20777 77.052 76.978 77.186 0 19 13 2 0 0 0 0.32871 1 42817 42817 15.847 8.558 1 1079100 44036 3856 29124 29861 51965 51965 0.020097256147437292 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2918701171875 2 556.292756 1110.57096 -0.45395 -0.00025253 1.0203 0.0005676 0.56637 0.00031507 556.2930577150078 77.525 0.41763 77.043 76.827 77.244 -0.4826 58 19 4 0 0 0 0.016184 2 42382 42382;42481 67.344 46.89 1 16512000 44037 3856 29124 29861 51966;51967 51966 0.020097256147437292 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2941284179688 2 556.292756 1110.57096 0.34208 0.0001903 1.4602 0.00081232 1.8023 0.0010026 556.293822024349 77.036 0.28802 77.086 76.91 77.198 0.05011 23 11 3 0 0 0 0.013323 1 42496 42496 71.134 50.68 1 3202200 44038 3856 29124 29861 51968 51968 0.020097256147437292 NYQVQFVTL 9 Unmodified _NYQVQFVTL_ 0 0 0 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 ENSG00000125484|ENST00000372146|GTF3C4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2937622070312 2 556.292756 1110.57096 0.32593 0.00018131 0.15463 8.6017E-05 0.48056 0.00026733 556.2929794647962 84.682 0.46503 78.507 78.224 78.689 -6.1757 70 26 3 0 0 0 0.016184 2 55598 55598;55733 67.344 25.504 1 75540000 44039 3856 29124 29861 51969;51970 51969 0.020097256147437292 NYRDTFFNL 9 Unmodified _NYRDTFFNL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.284912109375 2 595.285463 1188.55637 NaN NaN NaN NaN NaN NaN NaN 69.006 1 69.006 68.506 69.506 0 0 0 0 0.73776 1 38453 38453 8.1555 0.8663 1 44040 7973 29125 29862 51971 51971 -0.030363465333948625 NYRDTFFNL 9 Unmodified _NYRDTFFNL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2862548828125 2 595.285463 1188.55637 0.15064 8.9675E-05 -0.8078 -0.00048087 -0.65716 -0.0003912 595.2848562343823 82.282 1.1658 76.107 75.602 76.768 -6.1757 96 65 2 0 0 0 0.0082475 6 54300 53781;53913;54040;54169;54300;54453 99.755 56.526 1 19637000 44041 7973 29125 29862 51972;51973;51974;51975;51976;51977 51976 -0.030363465333948625 NYRPHPQRF 9 Unmodified _NYRPHPQRF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2132873535156 3 405.544101 1213.61047 -0.53667 -0.00021764 0.3902 0.00015824 -0.14646 -5.9397E-05 405.87849728730725 17.771 0.11599 17.785 17.711 17.827 0.013865 63 29 3 0 0 0 0.59218 1 8839 8839 0.96228 0 1 1515600 44042 3564 29126 29863 51978 51978 0.012212904087846255 NYRPHPQRF 9 Unmodified _NYRPHPQRF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5443725585938 3 405.544101 1213.61047 -0.1514 -6.1399E-05 0.38261 0.00015517 0.23122 9.3768E-05 405.54411259864094 17.739 0.1442 17.744 17.665 17.809 0.0050564 28 9 4 0 0 0 0.05447 1 8944 8944 33.445 26.411 1 6581900 44043 3564 29126 29863 51979 51979 0.012212904087846255 NYRPHPQRF 9 Unmodified _NYRPHPQRF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5449523925781 3 405.544101 1213.61047 0.92737 0.00037609 0.091597 3.7147E-05 1.019 0.00041324 405.5441322004679 18.788 0.32961 16.167 15.99 16.32 -2.6215 64 24 4 0 0 0 0.022193 2 9864 9864;9966 47.594 32.056 1 17437000 44044 3564 29126 29863 51980;51981 51980 0.012212904087846255 NYRQLEVF 8 Unmodified _NYRQLEVF_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7775268554688 2 534.777274 1067.53999 0.2847 0.00015225 0.77233 0.00041303 1.057 0.00056528 534.777676405517 53.028 0.38165 52.576 52.381 52.762 -0.45173 60 19 4 0 0 0 0.55032 1 28759 28759 30.225 4.8255 1 25166000 + 44045 19178 29127 29864 51982 51982 0.008925723004722386 NYRTDMIQA 9 Unmodified _NYRTDMIQA_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564285-1564453:-|nuORF;ENST00000573681.1_1_17:1563133-1564615:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20221201_MKP_PDAC_01 4 556.2627563476562 2 556.263673 1110.51279 NaN NaN NaN NaN NaN NaN NaN 93.438 1 87.263 86.763 87.763 -6.1757 0 0 0 0.56093 1 61843 61843 13.906 0.39817 1 44046 8403 29128 29865 51983 51983 -0.038042793021986654 NYRYDDRSF 9 Unmodified _NYRYDDRSF_ 0 0 0 REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.2749633789062 2 618.275626 1234.5367 0.3701 0.00022882 0.98673 0.00061007 1.3568 0.0008389 618.2766313766497 63.193 0.30687 63.193 63.031 63.338 0 26 12 3 0 0 0 0.54444 1 35309 35309 4.756 0.42677 1 1851500 + 44047 26778 29129 29866 51984 51984 -0.07118722544214506 NYSAIHPGL 9 Unmodified _NYSAIHPGL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2506103515625 2 486.250892 970.48723 0.24929 0.00012122 0.3588 0.00017447 0.60809 0.00029568 486.2511132854702 39.749 0.3171 39.749 39.595 39.912 0 38 15 3 0 0 0 0.013472 2 21287 21287;21395 70.716 38.41 1 12972000 44048 4412 29130 29867 51985;51986 51985 0.0008061423766321241 NYSAIHPGL 9 Unmodified _NYSAIHPGL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2508239746094 2 486.250892 970.48723 0.34764 0.00016904 -0.27116 -0.00013185 0.076483 3.719E-05 486.2506779156372 40.012 0.27003 39.715 39.592 39.862 -0.29716 24 12 3 0 0 0 0.045537 1 21116 21116 46.921 14.615 1 5351600 44049 4412 29130 29867 51987 51987 0.0008061423766321241 NYSAIHPGL 9 Unmodified _NYSAIHPGL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2516479492188 2 486.250892 970.48723 0.57272 0.00027849 0.85689 0.00041666 1.4296 0.00069515 486.25120099764746 44.839 0.39877 39.987 39.834 40.233 -4.852 63 27 3 0 0 0 0.013472 2 27347 27347;27482 70.716 45.316 1 32497000 44050 4412 29130 29867 51988;51989 51988 0.0008061423766321241 NYSDAIVWL 9 Unmodified _NYSDAIVWL_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7717895507812 2 540.771657 1079.52876 0.23667 0.00012798 -0.073906 -3.9966E-05 0.16276 8.8018E-05 540.7718412272527 89.793 0.20158 89.793 89.659 89.86 0 20 12 2 0 0 0 0.41742 1 49647 49647 11.64 9.5805 1 638610 44051 4607 29131 29868 51990 51990 -0.007822497936786021 NYSDAIVWL 9 Unmodified _NYSDAIVWL_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7727661132812 2 540.771657 1079.52876 0.27447 0.00014843 -0.35004 -0.00018929 -0.07557 -4.0866E-05 540.7714625762605 90.329 0.3288 89.827 89.639 89.967 -0.50171 34 14 3 0 0 0 0.047196 2 49332 49332;49427 46.021 34.906 1 3301100 44052 4607 29131 29868 51991;51992 51991 -0.007822497936786021 NYSDAIVWL 9 Unmodified _NYSDAIVWL_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7722778320312 2 540.771657 1079.52876 0.8453 0.00045711 1.0611 0.00057383 1.9064 0.0010309 540.7718569211554 99.324 0.26871 93.148 92.974 93.243 -6.1757 26 16 2 0 0 0 0.032796 1 66073 66073 53.833 26.949 1 57314000 44053 4607 29131 29868 51993 51993 -0.007822497936786021 NYSETPLQL 9 Unmodified _NYSETPLQL_ 0 0 0 nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-2|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 nc|ENSG00000151136|A6QL63-5|ABTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7673950195312 2 532.766571 1063.51859 0.68402 0.00036442 0.9531 0.00050778 1.6371 0.0008722 532.7670784429021 60.57 0.51002 60.57 60.301 60.811 0 64 22 4 0 0 0 0.009483 2 33744 33744;33844 81.89 64.948 1 24134000 44054 6093 29132 29869 51994;51995 51994 -0.010628575188775358 NYSGAAEYLYF 11 Unmodified _NYSGAAEYLYF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2908935546875 2 649.290411 1296.56627 -0.030734 -1.9955E-05 0.75344 0.0004892 0.7227 0.00046925 649.2908654818405 78.45 0.32653 78.45 78.313 78.64 0 35 15 3 0 0 0 0.67922 1 43555 43555 6.2058 4.3615 1 1213700 44055 2203 29133 29870 51996 51996 -0.07015203318724161 NYSGAAEYLYF 11 Unmodified _NYSGAAEYLYF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2896118164062 2 649.290411 1296.56627 0.24151 0.00015681 -0.042105 -2.7339E-05 0.1994 0.00012947 649.2903815670066 78.999 0.3909 78.513 78.295 78.686 -0.48596 41 16 3 0 0 0 0.073964 2 43218 43218;43328 45.7 26.443 1 4077300 44056 2203 29133 29870 51997;51998 51997 -0.07015203318724161 NYSGAAEYLYF 11 Unmodified _NYSGAAEYLYF_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.2911987304688 2 649.290411 1296.56627 1.0982 0.00071304 -0.21167 -0.00013744 0.88651 0.0005756 649.2900849158569 86.201 0.52308 80.026 79.76 80.283 -6.1757 66 28 3 0 0 0 2.9966E-06 2 56863 56727;56863 99.755 75.965 1 32865000 44057 2203 29133 29870 51999;52000 52000 -0.07015203318724161 NYSGYDDAWDQ 11 Unmodified _NYSGYDDAWDQ_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;ENST00000512472.5_1_6:43484832-43487226:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.2520751953125 2 667.252014 1332.48947 0.30807 0.00020556 1.4332 0.0009563 1.7413 0.0011619 667.2527928865214 46.108 0.13412 45.771 45.686 45.82 -0.33664 11 6 2 0 0 0 0.66428 1 24691 24691 7.609 1.4032 1 5542300 44058 8100 29134 29871 52001 52001 -0.16347046605847027 NYSGYDDAWDQ 11 Unmodified _NYSGYDDAWDQ_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43484832-43487644:+|nuORF;ENST00000512472.5_1_6:43484832-43487226:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 667.252014 1332.48947 0.032614 2.1762E-05 1.6768 0.0011189 1.7094 0.0011406 667.2530545726817 45.733 0.14326 45.733 45.625 45.768 0 -0.019169 7.1366E-05 NaN 7.609 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2974400 44059 8100 29134 29871 -0.16347046605847027 NYSLIDKHL 9 Unmodified _NYSLIDKHL_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000510379.1_1_4:148653338-148778808:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2011108398438 3 368.201229 1101.58186 -0.15308 -5.6363E-05 -0.034133 -1.2568E-05 -0.18721 -6.8931E-05 368.20167550274846 40.409 0.15569 40.409 40.276 40.432 0 10 7 2 0 0 0 0.32235 1 21695 21695 15.739 9.1082 1 1436200 44060 33 29135 29872 52002 52002 0.03513127989003806 NYSLIDKHL 9 Unmodified _NYSLIDKHL_ 0 0 0 ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant;ENSG00000071205|ENST00000336498|ARHGAP10;ENST00000510379.1_1_4:148653338-148778808:+|nuORF ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.201229 1101.58186 0.61673 0.00022708 -0.40134 -0.00014777 0.21539 7.9308E-05 368.2008713325675 40.657 0.1641 40.354 40.275 40.439 -0.30304 -0.027555 -7.3406E-05 NaN 15.739 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 844150 44061 33 29135 29872 0.03513127989003806 NYSLVYCLL 9 Carbamidomethyl (C) _NYSLVYC(Carbamidomethyl (C))LL_ NYSLVYC(1)LL NYSLVYC(78)LL 0 1 0 ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7903442382812 2 572.788992 1143.56343 1.2974 0.00074311 0.77487 0.00044384 2.0722 0.0011869 572.7890590733168 100.04 0.15533 93.862 93.769 93.924 -6.1757 24 10 3 0 0 0 0.010818 1 66800 66800 78.149 47.513 1 59187000 44062 6141 29136 29873 52003 52003 614 -0.0026074997722389526 NYSLVYCLL 9 Carbamidomethyl (C) _NYSLVYC(Carbamidomethyl (C))LL_ 0 1 0 ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 572.788992 1143.56343 1.9298 0.0011054 2.9275 0.0016768 4.8573 0.0027822 572.7908581812844 94.155 0.55589 94.17 93.908 94.464 0.014244 0.15387 0.0017455 NaN 78.149 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1004100 44063 6141 29136 29873 614 -0.0026074997722389526 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7924194335938 2 594.793455 1187.57236 0.67046 0.00039879 -0.78724 -0.00046824 -0.11677 -6.9455E-05 594.7930811851583 62.086 0.19207 61.598 61.489 61.681 -0.48764 14 8 2 0 0 0 0.13231 1 33834 33834 39.957 25.119 1 1689200 44064 5160 29137 29874 52004 52004 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.7936401367188 2 594.793455 1187.57236 0.13137 7.8139E-05 1.1441 0.00068052 1.2755 0.00075866 594.7934597553135 61.693 0.35275 61.66 61.496 61.848 -0.032787 82 17 6 0 0 0 0.0085857 2 33631 33631;33736 122.18 72.246 1 54871000 44065 5160 29137 29874 52005;52006 52005 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7922973632812 2 594.793455 1187.57236 0.31082 0.00018487 -0.57276 -0.00034067 -0.26194 -0.0001558 594.7930647596329 66.999 0.59218 60.823 60.519 61.111 -6.1757 72 32 3 0 0 0 0.0040067 2 43500 43500;43626 147.06 78.978 1 43485000 44066 5160 29137 29874 52007;52008 52007 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7936401367188 2 594.793455 1187.57236 0.32694 0.00019446 0.21178 0.00012596 0.53872 0.00032043 594.793563164595 67.714 0.38451 61.538 61.199 61.583 -6.1757 29 21 2 0 0 0 0.013118 1 44020 44020 88.954 42.933 1 23699000 44067 5160 29137 29874 52009 52009 -0.01392640296535319 NYSNIRFQF 9 Unmodified _NYSNIRFQF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.793212890625 2 594.793455 1187.57236 0.53889 0.00032053 0.040019 2.3803E-05 0.57891 0.00034433 594.7931163341847 68.602 0.61407 62.427 62.129 62.743 -6.1757 58 35 2 0 0 0 0.0015194 3 44909 44644;44781;44909 163.04 100.46 1 24964000 44068 5160 29137 29874 52010;52011;52012 52012 -0.01392640296535319 NYSNVSIHL 9 Unmodified _NYSNVSIHL_ 0 0 0 ENSG00000149231|ENST00000646818|CCDC82 ENSG00000149231|ENST00000646818|CCDC82 ENSG00000149231|ENST00000646818|CCDC82 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7676391601562 2 523.766906 1045.51926 1.0033 0.00052552 4.4634 0.0023378 5.4667 0.0028633 523.7689666125042 55.667 0.20206 49.746 49.638 49.84 -5.9211 18 11 2 0 0 0 0.14 1 35465 35465 29.082 9.8246 1 13081000 44069 5992 29138 29875 52013 52013 -0.0016801807917090628 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7615966796875 2 583.761289 1165.50803 0.3048 0.00017793 -1.0841 -0.00063288 -0.77934 -0.00045495 583.7604017331216 67.719 0.25368 67.719 67.621 67.875 0 21 11 3 0 0 0 0.16226 1 37764 37764 26.884 16.7 1 1222700 44070 6435 29139 29876 52014 52014 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7605590820312 2 583.761289 1165.50803 0.42214 0.00024643 -0.61574 -0.00035945 -0.19361 -0.00011302 583.7614133524905 68.345 0.34959 67.864 67.66 68.01 -0.48071 41 15 4 0 0 0 0.05447 2 37307 37307;37404 43.858 25.723 1 11988000 44071 6435 29139 29876 52015;52016 52015 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.7620239257812 2 583.761289 1165.50803 0.75668 0.00044172 0.19461 0.00011361 0.95129 0.00055532 583.7613273685887 67.856 0.24924 67.874 67.748 67.997 0.018028 21 11 2 0 0 0 0.07916 1 37273 37273 37.974 27.15 1 1973300 44072 6435 29139 29876 52017 52017 -0.0681084017332978 NYSPYVNYF 9 Unmodified _NYSPYVNYF_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.7614135742188 2 583.761289 1165.50803 0.96357 0.00056249 -0.11943 -6.9718E-05 0.84414 0.00049278 583.7610566584219 74.808 0.59902 68.633 68.344 68.943 -6.1757 93 31 4 0 0 0 0.0082661 3 48887 48769;48887;49005 92.491 56.447 1 97052000 44073 6435 29139 29876 52018;52019;52020 52019 -0.0681084017332978 NYSSAVQKF 9 Unmodified _NYSSAVQKF_ 0 0 0 nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2610473632812 2 522.261456 1042.50836 -0.31597 -0.00016502 -0.12974 -6.7757E-05 -0.4457 -0.00023277 522.261253832541 33.089 0.31555 33.089 32.927 33.243 0 32 15 3 0 0 0 0.36964 1 17391 17391 13.906 5.3128 1 7858300 44074 1280 29140 29877 52021 52021 -0.011194204534604069 NYSSAVQKF 9 Unmodified _NYSSAVQKF_ 0 0 0 nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2485961914062 2 522.261456 1042.50836 -0.34227 -0.00017876 2.5431 0.0013282 2.2008 0.0011494 522.262612766308 33.139 0.16473 32.98 32.913 33.078 -0.15918 10 6 2 0 0 0 0.54444 1 17295 17295 4.756 0.81161 1 707030 44075 1280 29140 29877 52022 52022 -0.011194204534604069 NYSSAVQKF 9 Unmodified _NYSSAVQKF_ 0 0 0 nc|ENSG00000079482|O60890-2|OPHN1;ENSG00000079482|ENST00000355520|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 nc|ENSG00000079482|O60890-2|OPHN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2616577148438 2 522.261456 1042.50836 1.3143 0.00068641 0.50663 0.00026459 1.8209 0.000951 522.2614883500478 37.415 0.36792 33.131 32.938 33.306 -4.2835 45 21 3 0 0 0 0.0082353 2 21917 21917;22044 96.111 41.337 1 18352000 44076 1280 29140 29877 52023;52024 52023 -0.011194204534604069 NYSVFYYEI 9 Unmodified _NYSVFYYEI_ 0 0 0 ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG ENSG00000170027|ENST00000307630|YWHAG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2772827148438 2 599.276772 1196.53899 NaN NaN NaN NaN NaN NaN NaN 83.92 1 83.421 82.921 83.921 -0.49961 0 0 0 0.82396 1 45930 45930 4.756 0 1 44077 7941 29141 29878 52025 52025 -0.051416868590649756 NYSYIFKYI 9 Unmodified _NYSYIFKYI_ 0 0 0 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 ENSG00000119396|ENST00000373840|RAB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.810546875 2 605.810782 1209.60701 0.27602 0.00016721 -1.7761 -0.001076 -1.5001 -0.00090875 605.8099853496592 79.337 0.26556 79.392 79.284 79.55 0.05497 20 9 3 0 0 0 0.07916 1 43855 43855 37.974 20.861 1 2429100 44078 3429 29142 29879 52026 52026 0.01059182791573221 NYSYLHCEW 9 Carbamidomethyl (C) _NYSYLHC(Carbamidomethyl (C))EW_ NYSYLHC(1)EW NYSYLHC(150)EW 0 1 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.2614135742188 2 636.26113 1270.50771 0.37864 0.00024092 -0.17658 -0.00011235 0.20206 0.00012857 636.2611258197603 56.309 0.51781 50.332 50.097 50.615 -5.9769 97 29 4 0 0 0 0.00012323 3 36085 35818;35945;36085 152.41 127.01 1 306830000 44079 8666;1884 29143 29880 52027;52028;52029 52029 182 -0.11672583164840944 NYSYPPCTL 9 Carbamidomethyl (C) _NYSYPPC(Carbamidomethyl (C))TL_ NYSYPPC(1)TL NYSYPPC(65)TL 0 1 0 ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MSMS AL20221201_MKP_PDAC_01 4 557.7472534179688 2 557.747324 1113.4801 NaN NaN NaN NaN NaN NaN NaN 57.733 1 51.706 51.206 52.206 -6.0275 0 0 0 0.032808 1 36941 36941 65.235 41.214 1 44080 7256 29144 29881 52030 52030 712 -0.07210486425083218 NYTARFSRF 9 Unmodified _NYTARFSRF_ 0 0 0 ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8648071289062 3 387.86484 1160.57269 -0.15579 -6.0424E-05 -0.54684 -0.0002121 -0.70262 -0.00027252 387.86487032381046 35.57 0.24592 35.595 35.456 35.702 0.024971 41 11 5 0 0 0 0.2324 1 18796 18796 14.957 10.06 1 83511000 44081 5594 29145 29882 52031 52031 -0.0011722057665792818 NYTARFSRF 9 Unmodified _NYTARFSRF_ 0 0 0 ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2935791015625 2 581.293622 1160.57269 0.39325 0.0002286 -1.1882 -0.00069069 -0.79494 -0.00046209 581.2932151649494 35.588 0.2489 35.613 35.474 35.723 0.024971 33 11 4 0 0 0 0.029718 1 18801 18801 55.503 31.482 1 13120000 44082 5594 29145 29882 52032 52032 -0.0011722057665792818 NYTARFSRF 9 Unmodified _NYTARFSRF_ 0 0 0 ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2957763671875 2 581.293622 1160.57269 0.83255 0.00048396 -0.76923 -0.00044715 0.063319 3.6807E-05 581.2927686677101 39.488 0.29894 35.037 34.876 35.175 -4.4509 46 17 3 0 0 0 0.21643 1 23504 23504 21.537 4.5947 1 54943000 44083 5594 29145 29882 52033 52033 -0.0011722057665792818 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7816772460938 2 572.779679 1143.5448 0.37835 0.00021671 -0.19674 -0.00011269 0.18161 0.00010402 572.7795688251715 58.84 0.41808 58.84 58.677 59.095 0 65 18 5 0 0 0 0.11784 2 32724 32724;32841 31.268 9.4825 1 87825000 44084 2927 29146 29883 52034;52035 52034 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7802734375 2 572.779679 1143.5448 0.47529 0.00027223 0.24571 0.00014074 0.721 0.00041297 572.7799272174323 59.468 0.44483 58.977 58.707 59.151 -0.49079 66 20 5 0 0 0 0.017075 1 32379 32379 66.457 38.828 1 61822000 44085 2927 29146 29883 52036 52036 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7803955078125 2 572.779679 1143.5448 0.38294 0.00021934 -0.022482 -1.2877E-05 0.36046 0.00020646 572.77961268429 59.119 0.24632 59.058 58.901 59.147 -0.060722 20 11 2 0 0 0 0.025842 1 32187 32187 57.722 15.882 1 7129800 44086 2927 29146 29883 52037 52037 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7800903320312 2 572.779679 1143.5448 0.59066 0.00033832 -0.44411 -0.00025438 0.14655 8.3942E-05 572.7793442746146 66.661 0.5414 60.485 60.349 60.89 -6.1757 65 30 3 0 0 0 0.012228 2 43327 43327;43458 74.2 32.36 1 31892000 44087 2927 29146 29883 52038;52039 52038 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MSMS AL20221201_MKP_PDAC_01 4 572.7797241210938 2 572.779679 1143.5448 NaN NaN NaN NaN NaN NaN NaN 65.994 1 59.818 59.318 60.318 -6.1757 0 0 0 0.076083 1 42890 42890 49.554 15.153 1 44088 2927 29146 29883 52040 52040 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MSMS AL20221201_MKP_PDAC_01 4 572.7793579101562 2 572.779679 1143.5448 NaN NaN NaN NaN NaN NaN NaN 66.18 1 60.005 59.505 60.505 -6.1757 0 0 0 0.076083 1 43032 43032 49.554 11.379 1 44089 2927 29146 29883 52041 52041 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MSMS AL20221201_MKP_PDAC_01 4 572.7802734375 2 572.779679 1143.5448 NaN NaN NaN NaN NaN NaN NaN 66.393 1 60.218 59.718 60.718 -6.1757 0 0 0 0.023462 1 43179 43179 74.2 20.367 1 44090 2927 29146 29883 52042 52042 -0.021225883474244256 NYTDIKDYL 9 Unmodified _NYTDIKDYL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MSMS AL20221201_MKP_PDAC_01 4 572.7801513671875 2 572.779679 1143.5448 NaN NaN NaN NaN NaN NaN NaN 67.363 1 61.187 60.687 61.687 -6.1757 0 0 0 0.049786 1 43875 43875 57.722 15.882 1 44091 2927 29146 29883 52043 52043 -0.021225883474244256 NYTDQWERW 9 Unmodified _NYTDQWERW_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2847900390625 2 649.283451 1296.55235 -0.23657 -0.0001536 -0.68873 -0.00044718 -0.9253 -0.00060078 649.2835692244256 55.124 0.23201 55.124 54.986 55.218 0 21 9 3 0 0 0 0.069655 1 30605 30605 40.239 19.658 1 1309000 44092 7561 29147 29884 52044 52044 -0.08406436027144082 NYTDQWERW 9 Unmodified _NYTDQWERW_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.783203125 2 649.283451 1296.55235 -0.15542 -0.00010091 -0.32244 -0.00020936 -0.47787 -0.00031027 649.2830940264936 55.851 0.24117 55.373 55.238 55.479 -0.47798 28 11 3 0 0 0 0.036857 1 30279 30279 51.63 44.341 1 4808400 44093 7561 29147 29884 52045 52045 -0.08406436027144082 NYTDQWERW 9 Unmodified _NYTDQWERW_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.2830200195312 2 649.283451 1296.55235 1.0479 0.00068038 -0.32314 -0.00020981 0.72475 0.00047057 649.2833624011954 61.622 0.47193 55.447 55.269 55.741 -6.1757 55 24 3 0 0 0 2.8664E-10 2 39654 39654;39787 171.09 143.46 1 43765000 44094 7561 29147 29884 52046;52047 52046 -0.08406436027144082 NYTEAFESL 9 Unmodified _NYTEAFESL_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2430419921875 2 537.242929 1072.47131 0.27572 0.00014813 -0.11962 -6.4264E-05 0.1561 8.3864E-05 537.2428868458557 63.216 0.35208 63.216 63.053 63.405 0 24 14 2 0 0 0 0.013323 1 35247 35247 71.134 38.828 1 4721000 44095 4072 29148 29885 52048 52048 -0.06203136789895325 NYTEIREKL 9 Unmodified _NYTEIREKL_ 0 0 0 ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B ENST00000510479.5_1_5:176948978-176959043:-|nuORF ENST00000510479.5_1_5:176948978-176959043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2121276855469 3 389.211906 1164.61389 -1.2607 -0.00049069 0.81729 0.0003181 -0.44344 -0.00017259 389.21236251591915 32.537 0.15758 32.537 32.481 32.639 0 18 8 3 0 0 0 0.14 1 17014 17014 27.223 6.8087 1 4989500 44096 14590 29149 29886 52049 52049 0.03816495672140263 NYTEIREKL 9 Unmodified _NYTEIREKL_ 0 0 0 ENST00000510479.5_1_5:176948978-176959043:-|nuORF;nc|ENSG00000146067|Q96PV7|FAM193B ENST00000510479.5_1_5:176948978-176959043:-|nuORF ENST00000510479.5_1_5:176948978-176959043:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 389.211906 1164.61389 0.8981 0.00034955 1.4348 0.00055842 2.3329 0.00090797 389.2124908073842 36.556 0.10726 32.272 32.204 32.311 -4.2835 -0.13214 0.00067677 NaN 27.223 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 9961100 44097 14590 29149 29886 0.03816495672140263 NYTEWLQDL 9 Unmodified _NYTEWLQDL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2792358398438 2 591.277303 1180.54005 0.083513 4.9379E-05 0.69502 0.00041095 0.77853 0.00046033 591.277718477618 87.956 0.32116 87.956 87.788 88.109 0 46 18 3 0 0 0 0.36964 2 48649 48649;48745 13.906 8.6754 1 1638500 44098 3894 29150 29887 52050;52051 52050 -0.04299472490174594 NYTEWLQDL 9 Unmodified _NYTEWLQDL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2797241210938 2 591.277303 1180.54005 0.4756 0.00028121 1.0406 0.00061527 1.5162 0.00089648 591.2780480442347 88.513 0.44868 88.009 87.825 88.273 -0.50423 44 19 3 0 0 0 0.044011 2 48358 48358;48450 47.749 32.91 1 3862300 44099 3894 29150 29887 52052;52053 52052 -0.04299472490174594 NYTEWLQDL 9 Unmodified _NYTEWLQDL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2733764648438 2 591.277303 1180.54005 -0.14026 -8.2931E-05 -0.17192 -0.00010165 -0.31218 -0.00018458 591.2768524597243 98.866 0.26526 92.69 92.576 92.841 -6.1757 47 19 3 0 0 0 0.023481 1 65611 65611 60.074 60.074 1 237350000 44100 3894 29150 29887 52054 52054 -0.04299472490174594 NYTKAMRLF 9 Oxidation (M) _NYTKAM(Oxidation (M))RLF_ NYTKAM(1)RLF NYTKAM(50)RLF 0 0 1 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3001098632812 2 580.300059 1158.58556 0.35011 0.00020317 0.19399 0.00011257 0.54411 0.00031574 580.3004990193419 32.808 0.49656 32.838 32.643 33.14 0.029743 40 21 3 0 0 0 0.040683 1 17227 17227 49.554 33.405 1 17806000 44101 9065 29151 29888 52055 52055 1521 0.012614744912070819 NYTKAMRLF 9 Unmodified _NYTKAMRLF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8709716796875 3 381.870826 1142.59065 NaN NaN NaN NaN NaN NaN NaN 45.425 1 45.397 44.897 45.897 -0.028011 0 0 0 0.12337 1 24402 24402 36.506 27.123 1 44102 9065 29151 29889 52056 52056 0.02505778353815913 NYTKAMRLF 9 Unmodified _NYTKAMRLF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.871337890625 3 381.870826 1142.59065 1.586 0.00060565 -0.26442 -0.00010097 1.3216 0.00050468 381.8708594585924 50.177 0.5429 44.638 44.357 44.9 -5.5391 109 34 5 0 0 0 0.070838 3 31445 31308;31445;31580 29.841 19.69 1 131110000 44103 9065 29151 29889 52057;52058;52059 52058 0.02505778353815913 NYTKAMRLF 9 Unmodified _NYTKAMRLF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.30224609375 2 572.302601 1142.59065 1.2401 0.0007097 0.3018 0.00017272 1.5419 0.00088243 572.3029347847981 50.17 0.46387 44.631 44.408 44.872 -5.5391 80 29 4 0 0 0 0.0038489 2 31363 31363;31496 122.18 95.296 1 61311000 44104 9065 29151 29889 52060;52061 52060 0.02505778353815913 NYTLCRNGVKE 11 Unmodified _NYTLCRNGVKE_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENST00000463221.2_1_20:46318868-46386107:-|nuORF ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8854064941406 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 32.708 1 32.708 32.208 33.208 0 0 0 0 0.94287 1 17109 17109 0.45452 0.046251 1 44105 9841 29152 29890 52062 52062 -0.006769608023432738 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2189331054688 2 530.295299 1058.57605 0.46774 0.00024804 0.036378 1.9291E-05 0.50412 0.00026733 530.295078851317 66.216 0.19035 66.216 66.091 66.281 0 12 8 2 0 0 0 0.17275 1 36921 36921 21.747 15.541 1 722760 44106 7561 29153 29891 52063 52063 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2960205078125 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 66.522 1 66.039 65.539 66.539 -0.48323 0 0 0 0.035065 1 36329 36329 64.236 34.012 1 44107 7561 29153 29891 52064 52064 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2952270507812 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 66.712 1 66.229 65.729 66.729 -0.48323 0 0 0 0.014922 1 36437 36437 85.357 58.473 1 44108 7561 29153 29891 52065 52065 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2962036132812 2 530.295299 1058.57605 0.99402 0.00052713 2.9085 0.0015424 3.9025 0.0020695 530.295247880427 66.143 0.50663 66.152 65.911 66.417 0.0095596 97 25 6 0 0 0 0.0090851 2 36215 36215;36327 85.357 58.473 1 32322000 44109 7561 29153 29891 52066;52067 52066 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.294189453125 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 77.644 1 71.469 70.969 71.969 -6.1757 0 0 0 0.083082 1 50794 50794 47.749 22.349 1 44110 7561 29153 29891 52068 52068 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.294677734375 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 77.931 1 71.755 71.255 72.255 -6.1757 0 0 0 0.065563 1 50992 50992 52.268 28.248 1 44111 7561 29153 29891 52069 52069 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.29541015625 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 78.291 1 72.115 71.615 72.615 -6.1757 0 0 0 0.023279 1 51240 51240 74.423 47.539 1 44112 7561 29153 29891 52070 52070 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.2946166992188 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 78.524 1 72.348 71.848 72.848 -6.1757 0 0 0 0.023279 1 51401 51401 74.423 28.402 1 44113 7561 29153 29891 52071 52071 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.29443359375 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 78.9 1 72.724 72.224 73.224 -6.1757 0 0 0 0.023279 1 51680 51680 74.423 44.198 1 44114 7561 29153 29891 52072 52072 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.2960815429688 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 79.494 1 73.318 72.818 73.818 -6.1757 0 0 0 0.014922 1 52093 52093 85.357 51.254 1 44115 7561 29153 29891 52073 52073 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.2957763671875 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 79.706 1 73.53 73.03 74.03 -6.1757 0 0 0 0.0064238 1 52251 52251 100.37 54.351 1 44116 7561 29153 29891 52074 52074 0.049100294773325004 NYTLVSHLI 9 Unmodified _NYTLVSHLI_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;ENST00000548630.1_1_12:57906018-57906171:+|nuORF;ENST00000537638.6_1_12:57905855-57911076:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20221201_MKP_PDAC_01 4 530.2974853515625 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 79.911 1 73.736 73.236 74.236 -6.1757 0 0 0 0.047623 1 52402 52402 58.679 28.042 1 44117 7561 29153 29891 52075 52075 0.049100294773325004 NYTLWKGQL 9 Unmodified _NYTLWKGQL_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8011474609375 2 561.800749 1121.58694 1.0767 0.0006049 0.16646 9.3519E-05 1.2432 0.00069842 561.8005529738527 58.506 0.19267 58.445 58.333 58.526 -0.060719 19 9 3 0 0 0 0.069655 1 31872 31872 52.268 34.122 1 2881000 44118 7103 29154 29892 52076 52076 0.031014318516326966 NYTNGSFGSNF 11 Unmodified _NYTNGSFGSNF_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2551879882812 2 604.25436 1206.49417 -0.0033727 -2.038E-06 0.48993 0.00029604 0.48656 0.000294 604.2549938072057 50.157 0.22891 50.157 50.053 50.282 0 23 10 3 0 0 0 0.50268 1 27623 27623 26.268 20.062 1 2430800 44119 2594 29155 29893 52077 52077 -0.10082117672413915 NYTNGSFGSNF 11 Unmodified _NYTNGSFGSNF_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2550048828125 2 604.25436 1206.49417 0.6122 0.00036992 -0.87943 -0.0005314 -0.26723 -0.00016148 604.254339903823 50.797 0.28143 50.383 50.236 50.518 -0.41351 30 13 3 0 0 0 0.66568 1 27340 27340 13.906 7.7003 1 3503900 44120 2594 29155 29893 52078 52078 -0.10082117672413915 NYTNKFLLI 9 Unmodified _NYTNKFLLI_ 0 0 0 nc|ENSG00000181634|O95150-3|TNFSF15;nc|ENSG00000181634|O95150-2|TNFSF15;ENSG00000181634|ENST00000374045|TNFSF15 nc|ENSG00000181634|O95150-3|TNFSF15 nc|ENSG00000181634|O95150-3|TNFSF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3189697265625 2 563.318774 1124.623 0.9161 0.00051606 -0.033183 -1.8693E-05 0.88292 0.00049736 563.318886357133 71.885 0.327 71.924 71.727 72.054 0.039024 21 15 2 0 0 0 0.08691 1 39582 39582 36.127 12.979 1 2282800 44121 8983 29156 29894 52079 52079 0.06566889028476908 NYTSEAHQI 9 Unmodified _NYTSEAHQI_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7454833984375 2 531.74617 1061.47779 -0.10803 -5.7442E-05 -0.85759 -0.00045602 -0.96561 -0.00051346 531.7457380290406 24.314 0.1595 24.314 24.227 24.386 0 19 11 2 0 0 0 0.03568 1 12409 12409 52.268 30.522 1 1183200 44122 8833 29157 29895 52080 52080 -0.050491988385147124 NYVATTHMI 9 Oxidation (M) _NYVATTHM(Oxidation (M))I_ NYVATTHM(1)I NYVATTHM(57)I 0 0 1 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.256103515625 2 533.255317 1064.49608 -0.13901 -7.4128E-05 0.25719 0.00013715 0.11818 6.302E-05 533.2555522285061 29.124 0.34714 29.124 29.002 29.349 0 45 16 3 0 0 0 0.026094 1 15147 15147 57.471 28.985 1 4582200 44123 6251 29158 29896 52081 52081 1112 -0.03358780188182209 NYVATTHMI 9 Oxidation (M) _NYVATTHM(Oxidation (M))I_ 0 0 1 nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 nc|ENSG00000153234|P43354-2|NR4A2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 533.255317 1064.49608 0.66641 0.00035537 0.79547 0.00042419 1.4619 0.00077955 533.2556996100147 33.175 0.090046 29.319 29.281 29.371 -3.8562 0.097254 0.00054463 NaN 57.471 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 8871500 44124 6251 29158 29896 1112 -0.03358780188182209 NYVEDIPFL 9 Unmodified _NYVEDIPFL_ 0 0 0 nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6 nc|ENSG00000162836|Q9NPH0-2|ACP6 nc|ENSG00000162836|Q9NPH0-2|ACP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2789306640625 2 555.279315 1108.54408 NaN NaN NaN NaN NaN NaN NaN 95.248 1 94.879 94.379 95.379 -0.36814 0 0 0 0.84564 1 52027 52027 2.0598 0 1 44125 6919 29159 29897 52082 52082 -0.005853829964735269 NYVEKGFQI 9 Unmodified _NYVEKGFQI_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2890014648438 2 549.284931 1096.55531 0.92541 0.00050831 1.8551 0.001019 2.7806 0.0015273 549.2862835898201 54.97 0.28722 49.105 48.881 49.168 -5.8653 30 17 2 0 0 0 0.069655 1 34840 34840 40.239 13.356 1 18976000 44126 5202 29160 29898 52083 52083 0.010894390976773138 NYVEKGFQI 9 Unmodified _NYVEKGFQI_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.284931 1096.55531 0.68265 0.00037497 -0.27013 -0.00014838 0.41251 0.00022659 549.2843754318898 49.405 0.23923 49.405 49.296 49.536 0 0.093927 0.00059493 NaN 40.239 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8369300 44127 5202 29160 29898 0.010894390976773138 NYVEKGFQI 9 Unmodified _NYVEKGFQI_ 0 0 0 ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF ENSG00000139974|ENST00000267488|SLC38A6 ENSG00000139974|ENST00000267488|SLC38A6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.284931 1096.55531 0.77998 0.00042843 -2.0561 -0.0011294 -1.2761 -0.00070096 549.2835874980804 49.816 0.23319 49.423 49.277 49.51 -0.3923 0.11238 -0.0013671 NaN 40.239 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4772400 44128 5202 29160 29898 0.010894390976773138 NYVEVTRKW 9 Unmodified _NYVEVTRKW_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.817626953125 2 597.81693 1193.61931 -0.32393 -0.00019365 0.60155 0.00035962 0.27762 0.00016597 597.8172399022684 35.412 0.32977 35.19 34.958 35.288 -0.2224 27 14 2 0 0 0 0.0081 1 18506 18506 93.938 42.308 1 8387100 44129 8295 29161 29899 52084 52084 0.0302421925462113 NYVEVTRKW 9 Unmodified _NYVEVTRKW_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.8799743652344 3 398.880379 1193.61931 -0.35342 -0.00014097 -0.59676 -0.00023804 -0.95018 -0.00037901 398.8800131040981 35.375 0.28716 35.153 35.001 35.288 -0.2224 20 12 2 0 0 0 0.28023 1 18546 18546 17.443 12.914 1 3597100 44130 8295 29161 29899 52085 52085 0.0302421925462113 NYVEVTRKW 9 Unmodified _NYVEVTRKW_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8165283203125 2 597.81693 1193.61931 -0.14198 -8.488E-05 -0.65495 -0.00039154 -0.79693 -0.00047642 597.8162777007111 35.127 0.17193 35.154 35.061 35.233 0.027401 15 7 3 0 0 0 0.047788 1 18569 18569 45.7 22.963 1 2173400 44131 8295 29161 29899 52086 52086 0.0302421925462113 NYVEVTRKW 9 Unmodified _NYVEVTRKW_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8807373046875 3 398.880379 1193.61931 0.96513 0.00038497 -0.40203 -0.00016036 0.5631 0.00022461 398.88018042780044 39.456 0.47265 35.005 34.734 35.207 -4.4509 68 28 3 0 0 0 0.10247 2 23352 23352;23478 24.882 18.258 1 61281000 44132 8295 29161 29899 52087;52088 52087 0.0302421925462113 NYVEVTRKW 9 Unmodified _NYVEVTRKW_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8165283203125 2 597.81693 1193.61931 0.34213 0.00020453 0.13394 8.0071E-05 0.47607 0.0002846 597.8169276480379 39.465 0.37826 35.014 34.796 35.175 -4.4509 58 22 3 0 0 0 0.0081 2 23367 23367;23497 93.938 50.166 1 36137000 44133 8295 29161 29899 52089;52090 52089 0.0302421925462113 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8765869140625 3 369.876746 1106.60841 -0.45289 -0.00016751 -0.72507 -0.00026819 -1.178 -0.0004357 369.8765524523734 40.957 0.21402 40.957 40.868 41.082 0 31 18 2 0 0 0 0.2324 1 22023 22023 19.626 11.182 1 13184000 44134 5621 29162 29900 52091 52091 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2774047851562 2 554.31148 1106.60841 -0.047666 -2.6422E-05 -2.0416 -0.0011317 -2.0893 -0.0011581 554.8119189698798 40.943 0.14188 40.943 40.903 41.045 0 16 10 2 0 0 0 0.15363 1 22078 22078 29.841 2.9569 1 7987300 44135 5621 29162 29900 52092 52092 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.876953125 3 369.876746 1106.60841 0.018695 6.9147E-06 0.23864 8.8267E-05 0.25733 9.5181E-05 369.87681569491593 41.301 0.29151 40.997 40.841 41.132 -0.30304 39 13 4 0 0 0 0.18144 1 21830 21830 23.801 4.1751 1 31360000 44136 5621 29162 29900 52093 52093 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.3115234375 2 554.31148 1106.60841 0.23479 0.00013015 -0.52875 -0.00029309 -0.29395 -0.00016294 554.310941089394 41.293 0.20407 40.99 40.863 41.067 -0.30304 24 9 3 0 0 0 0.13231 1 21886 21886 29.841 2.9569 1 18496000 44137 5621 29162 29900 52094 52094 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8766479492188 3 369.876746 1106.60841 0.1895 7.0091E-05 0.4197 0.00015524 0.6092 0.00022533 369.87684485745376 40.982 0.26586 40.98 40.83 41.096 -0.0017929 21 12 2 0 0 0 0.11784 1 21871 21871 29.437 9.8112 1 4651800 44138 5621 29162 29900 52095 52095 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8773803710938 3 369.876746 1106.60841 1.3565 0.00050175 -0.077219 -2.8562E-05 1.2793 0.00047319 369.8767806882211 45.836 0.53676 40.881 40.598 41.135 -4.9549 86 35 3 0 0 0 0.085319 3 28193 28047;28193;28340 34.222 10.421 1 118040000 44139 5621 29162 29900 52096;52097;52098 52097 0.05936816880330298 NYVKDLSRL 9 Unmodified _NYVKDLSRL_ 0 0 0 ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENSG00000144579|ENST00000273062|CTDSP1;nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000497677.5_1_2:219264813-219268311:+|nuORF;ENSG00000144677|ENST00000273179|CTDSPL ENST00000464255.1_1_2:219265892-219269145:+|nuORF ENST00000464255.1_1_2:219265892-219269145:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3131713867188 2 554.31148 1106.60841 0.81122 0.00044967 0.62347 0.0003456 1.4347 0.00079527 554.3118557321538 45.796 0.41061 40.841 40.669 41.08 -4.9549 49 26 2 0 0 0 0.0089732 2 28091 28091;28229 86.332 17.227 1 51309000 44140 5621 29162 29900 52099;52100 52099 0.05936816880330298 NYVKKFESI 9 Unmodified _NYVKKFESI_ 0 0 0 ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;ENST00000547085.1_1_12:112600816-112607652:-|nuORF;nc|ENSG00000173064|Q9Y4D8-4|HECTD4 ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4 ENSG00000173064|ENST00000682272|HECTD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5409545898438 3 376.541363 1126.60226 -0.49439 -0.00018616 -0.13065 -4.9197E-05 -0.62504 -0.00023535 376.54130062822225 35.106 0.17497 35.106 35.034 35.209 0 14 8 2 0 0 0 0.45045 1 18568 18568 6.6304 0.89852 1 2498400 44141 8283;16387 29163 29901 52101 52101 0.04402298648801661 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5419616699219 3 387.541475 1159.60259 -0.24546 -9.5124E-05 0.92891 0.00035999 0.68346 0.00026487 387.5418554289965 34.1 0.20226 33.909 33.795 33.998 -0.19132 15 7 3 0 0 0 0.54444 1 17805 17805 2.7352 0 1 1196800 44142 2656 29164 29902 52102 52102 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8093872070312 2 580.808574 1159.60259 -0.25998 -0.000151 0.54411 0.00031602 0.28413 0.00016503 580.8085722176774 34.066 0.12994 33.875 33.843 33.972 -0.19131 8 4 2 0 0 0 0.51218 1 17810 17810 6.7232 4.8789 1 898430 44143 2656 29164 29902 52103 52103 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8091430664062 2 580.808574 1159.60259 0.55533 0.00032254 -0.41912 -0.00024343 0.1362 7.9108E-05 580.8086541107709 33.821 0.2795 33.85 33.672 33.952 0.028934 25 11 3 0 0 0 0.0074135 1 17808 17808 110.67 76.273 1 7908800 44144 2656 29164 29902 52104 52104 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5418395996094 3 387.541475 1159.60259 1.4048 0.00054442 -0.70658 -0.00027383 0.69821 0.00027059 387.54110400410036 38.007 0.4329 33.638 33.437 33.87 -4.3689 66 25 3 0 0 0 0.36964 2 22298 22298;22424 23.79 18.493 1 73899000 44145 2656 29164 29902 52105;52106 52105 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8092041015625 2 580.808574 1159.60259 1.028 0.00059708 -0.27358 -0.0001589 0.75444 0.00043818 580.8083319415839 38.01 0.35887 33.641 33.456 33.814 -4.3689 50 21 3 0 0 0 0.00044362 2 22311 22311;22435 145.13 107.16 1 34393000 44146 2656 29164 29902 52107;52108 52107 0.029177183686670105 NYVKKFQSF 9 Unmodified _NYVKKFQSF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623179-29633907:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 387.541475 1159.60259 0.037583 1.4565E-05 0.33089 0.00012823 0.36847 0.0001428 387.54172848257747 33.834 0.4113 33.863 33.625 34.036 0.028934 0.059579 0.00024949 NaN 23.79 40 12 4 NaN NaN NaN NaN 0 NaN NaN 0 14121000 44147 2656 29164 29902 0.029177183686670105 NYVKVQGTCHL 11 Unmodified _NYVKVQGTCHL_ 0 0 0 REV__ENSG00000116016|ENST00000263734|EPAS1 REV__ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2179870605469 3 421.216774 1260.62849 -0.0905 -3.812E-05 2.5974 0.0010941 2.5069 0.001056 421.2180304149611 30.115 0.28202 30.145 29.995 30.277 0.030106 15 11 2 0 0 0 0.69708 1 15746 15746 2.084 0.17759 1 771400 + 44148 19021 29165 29903 52109 52109 0.008602445486530996 NYVLADNPKL 10 Unmodified _NYVLADNPKL_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8115234375 2 573.811313 1145.60807 0.63356 0.00036354 -0.061209 -3.5123E-05 0.57235 0.00032842 573.8112971785415 44.821 0.51846 39.969 39.73 40.249 -4.852 112 39 4 0 0 0 0.48629 1 27262 27262 14.405 0.49933 1 160700000 + 44149 20434 29166 29904 52110 52110 0.04109397160482331 NYVNILATI 9 Unmodified _NYVNILATI_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7887268066406 2 510.78985 1019.56515 0.24334 0.0001243 -1.7461 -0.00089187 -1.5027 -0.00076757 511.2894355914479 90.485 0.18251 89.991 89.891 90.074 -0.49457 11 8 2 0 0 0 0.48152 1 49445 49445 8.5933 2.8329 1 351830 44150 3031 29167 29905 52111 52111 0.05614627103068415 NYVNPRALL 9 Unmodified _NYVNPRALL_ 0 0 0 nc|ENSG00000100060|O00587-2|MFNG;ENSG00000100060|ENST00000356998|MFNG nc|ENSG00000100060|O00587-2|MFNG nc|ENSG00000100060|O00587-2|MFNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8699951171875 3 353.869703 1058.58728 -0.023553 -8.3347E-06 0.25729 9.1048E-05 0.23374 8.2714E-05 353.86981912291884 41.192 0.28941 41.19 40.989 41.279 -0.0017929 31 13 3 0 0 0 0.40476 1 22047 22047 12.241 0.74595 1 6444300 44151 1746 29168 29906 52112 52112 0.06032851571490028 NYVPEVSAL 9 Unmodified _NYVPEVSAL_ 0 0 0 ENSG00000182774|ENST00000647841|RPS17;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF ENSG00000182774|ENST00000647841|RPS17 ENSG00000182774|ENST00000647841|RPS17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2585754394531 2 496.258382 990.502212 0.23485 0.00011655 -0.46916 -0.00023282 -0.23431 -0.00011628 496.258163991187 61.536 0.27355 61.536 61.389 61.663 0 21 12 2 0 0 0 0.14602 1 34273 34273 28.487 12.64 1 2919800 44152 9086 29169 29907 52113 52113 0.006580613150163117 NYVPNMVVW 9 Unmodified _NYVPNMVVW_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.7388916015625 2 561.276052 1120.53755 1.0391 0.00058321 -0.038452 -2.1582E-05 1.0006 0.00056162 561.2757369713385 91.168 0.70099 84.993 84.67 85.371 -6.1757 71 39 2 0 0 0 0.1474 1 60325 60325 28.487 19.894 1 14317000 44153 840 29170 29908 52114 52114 -0.017895994288210204 NYVQAVEEF 9 Unmodified _NYVQAVEEF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850915-61851251:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.758544921875 2 549.758746 1097.50294 0.57766 0.00031757 -0.30622 -0.00016835 0.27144 0.00014922 549.7585557286477 60.941 0.62535 60.941 60.695 61.321 0 87 26 5 0 0 0 0.019303 3 34027 33925;34027;34129 64.236 41.5 1 89430000 44154 14844 29171 29909 52115;52116;52117 52116 -0.04191144035939942 NYVTNKSNSF 10 Unmodified _NYVTNKSNSF_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;ENST00000497509.1_1_22:46926386-46930076:-|nuORF;nc|ENSG00000075275|Q9NYQ6-2|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2810668945312 2 587.280377 1172.5462 0.6482 0.00038067 -0.95742 -0.00056227 -0.30922 -0.0001816 587.2799411339169 54.65 0.40503 48.785 48.607 49.012 -5.8653 54 24 3 0 0 0 0.59286 1 34790 34790 13.042 0 1 41403000 44155 1149 29172 29910 52118 52118 -0.03316954258662008 NYVVIGTCTF 10 Carbamidomethyl (C) _NYVVIGTC(Carbamidomethyl (C))TF_ NYVVIGTC(1)TF NYVVIGTC(85)TF 0 1 0 ENSG00000075188|ENST00000552283|NUP37;ENST00000548994.1_1_12:102509600-102512308:-|nuORF;ENST00000551200.5_1_12:102471044-102512308:-|nuORF ENSG00000075188|ENST00000552283|NUP37 ENSG00000075188|ENST00000552283|NUP37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2859497070312 2 587.284074 1172.5536 0.29404 0.00017268 -0.52073 -0.00030582 -0.22669 -0.00013313 587.2841876829795 76.662 0.68584 70.486 70.252 70.938 -6.1757 69 36 3 0 0 0 0.01132 3 50084 50084;50202;50319 85.272 70.434 1 41531000 44156 1144 29173 29911 52119;52120;52121 52119 102 -0.02577937982596268 NYWMDRIEF 9 Unmodified _NYWMDRIEF_ 0 0 0 REV__nc|ENSG00000150760|Q14185|DOCK1 REV__nc|ENSG00000150760|Q14185|DOCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.2858276367188 2 637.287148 1272.55974 0.3097 0.00019737 -3.012 -0.0019195 -2.7023 -0.0017222 637.285262321284 73.875 0.24704 73.919 73.781 74.028 0.043983 23 11 3 0 0 0 0.32871 1 40743 40743 15.847 1.0089 1 2149200 + 44157 21037 29174 29912 52122 52122 -0.06563419751068977 NYYDRSQY 8 Unmodified _NYYDRSQY_ 0 0 0 REV__nc|ENSG00000169083|P10275-3|AR REV__nc|ENSG00000169083|P10275-3|AR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.1619567871094 3 370.161322 1107.46214 NaN NaN NaN NaN NaN NaN NaN 41.422 1 41.422 40.922 41.922 0 0 0 0 0.9559 1 22339 22339 9.3831 0.63772 1 + 44158 22371 29175 29913 52123 52123 -0.08729485355547695 NYYEATQTI 9 Unmodified _NYYEATQTI_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236-3|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7562255859375 2 551.756204 1101.49785 0.98194 0.00054179 -0.5865 -0.00032361 0.39544 0.00021819 551.7559850078131 42.545 0.34291 42.545 42.339 42.682 0 53 16 4 0 0 0 0.06294 1 23017 23017 41.84 11.203 1 12278000 44159 4058 29176 29914 52124 52124 -0.0488344789855546 NYYEVHKELF 10 Unmodified _NYYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.8869323730469 3 447.88731 1340.6401 0.15561 6.9698E-05 0.60004 0.00026875 0.75566 0.00033845 448.2218016631703 44.258 0.19387 44.258 44.131 44.325 0 19 9 3 0 0 0 0.41271 1 24057 24057 20.871 16.155 1 13598000 44160 16497 29177 29915 52125 52125 -0.016592351563986085 NYYEVHKELF 10 Unmodified _NYYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.328125 2 671.327328 1340.6401 -0.23547 -0.00015808 1.4533 0.00097564 1.2178 0.00081756 671.3287323495051 44.269 0.15407 44.269 44.151 44.305 0 12 7 2 0 0 0 0.13206 1 24085 24085 40.725 28.484 1 6784800 44161 16497 29177 29915 52126 52126 -0.016592351563986085 NYYEVHKELF 10 Unmodified _NYYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.8873291015625 3 447.88731 1340.6401 -0.29104 -0.00013035 0.1456 6.521E-05 -0.14544 -6.5141E-05 447.88705293257357 44.494 0.18563 44.178 44.101 44.287 -0.31585 27 11 3 0 0 0 0.24975 1 23725 23725 30.431 24.197 1 28410000 44162 16497 29177 29915 52127 52127 -0.016592351563986085 NYYEVHKELF 10 Unmodified _NYYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.8280639648438 2 671.327328 1340.6401 -0.22807 -0.00015311 -0.39931 -0.00026807 -0.62738 -0.00042118 671.8287289392616 44.49 0.12991 44.174 44.115 44.245 -0.31585 14 8 2 0 0 0 0.013153 1 23743 23743 101.54 76.552 1 9905000 44163 16497 29177 29915 52128 52128 -0.016592351563986085 NYYEVHKELF 10 Unmodified _NYYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2221069335938 3 447.88731 1340.6401 1.2131 0.00054332 -0.71014 -0.00031806 0.50293 0.00022526 447.88702614976836 49.427 0.39774 44.031 43.824 44.222 -5.3961 53 24 3 0 0 0 0.22922 3 30809 30809;30854;30926 31.636 23.191 1 127530000 44164 16497 29177 29915 52129;52130;52131 52129 -0.016592351563986085 NYYGSRCRDC 10 Unmodified _NYYGSRCRDC_ 0 0 0 REV__nc|ENSG00000058085|Q13753-2|LAMC2 REV__nc|ENSG00000058085|Q13753-2|LAMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.7465209960938 2 618.747864 1235.48118 -0.82178 -0.00050847 0.44196 0.00027346 -0.37982 -0.00023501 618.7479670713818 32.67 0.19121 32.67 32.561 32.753 0 20 9 3 0 0 0 0.6966 1 17090 17090 3.2813 1.7994 1 3169100 + 44165 17310 29178 29916 52132 52132 -0.12714595327793177 NYYGYFLASY 10 Unmodified _NYYGYFLASY_ 0 0 0 REV__nc|ENSG00000149488|Q8TDI7-3|TMC2 REV__nc|ENSG00000149488|Q8TDI7-3|TMC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3363037109375 2 630.782222 1259.54989 0.66854 0.0004217 -2.6697 -0.001684 -2.0011 -0.0012623 630.7809869955771 65.192 0.20492 65.192 65.056 65.261 7.6294E-06 19 9 3 0 0 0 0.22941 1 35663 35663 13.906 8.1742 1 4191200 + 44166 20998 29179 29917 52133 52133 -0.06950284484810254 NYYKILSLS 9 Unmodified _NYYKILSLS_ 0 0 0 ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5380249023438 3 367.53773 1099.59136 -0.010273 -3.7757E-06 1.5691 0.0005767 1.5588 0.00057293 367.5381931877408 14.837 0.10092 14.842 14.795 14.896 0.0057764 6 3 2 0 0 0 0.61256 1 7400 7400 0.26902 0 1 721180 44167 10557 29180 29918 52134 52134 0.04554896274544262 NYYTVWKQ 8 Unmodified _NYYTVWKQ_ 0 0 0 nc|ENSG00000088298|Q9BV94-2|EDEM2;ENSG00000088298|ENST00000374492|EDEM2 nc|ENSG00000088298|Q9BV94-2|EDEM2 nc|ENSG00000088298|Q9BV94-2|EDEM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.2720947265625 2 551.271824 1100.5291 0.4582 0.00025259 0.16141 8.898E-05 0.61961 0.00034157 551.2724193906802 40.503 0.27269 40.508 40.36 40.633 0.0050545 31 12 3 0 0 0 0.56356 1 21579 21579 28.487 13.238 1 3877100 44168 1483 29181 29919 52135 52135 -0.017148300737972022 NYYYYHYCYAW 11 Unmodified _NYYYYHYCYAW_ 0 0 0 ENST00000360409.7_1_2:206547248-206547725:+|nuORF ENST00000360409.7_1_2:206547248-206547725:+|nuORF ENST00000360409.7_1_2:206547248-206547725:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2162475585938 3 536.879939 1607.61799 1.1336 0.0006086 0.6032 0.00032384 1.7368 0.00093245 536.8802542360415 37.534 0.4429 33.251 32.991 33.433 -4.2835 66 26 3 0 0 0 0.74442 2 21942 21942;22063 0.08335 0.08335 1 22370000 44169 12166 29182 29920 52136;52137 52136 -0.16151782896440636 PAAAAHPHL 9 Unmodified _PAAAAHPHL_ 0 0 0 ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF;ENST00000300954.9_1_19:1483001-1487678:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2215270996094 2 442.740494 883.466435 0.98457 0.00043591 0.49121 0.00021748 1.4758 0.00065339 442.74046298381825 39.526 0.29824 35.076 34.896 35.194 -4.4509 27 17 2 0 0 0 0.18941 1 23369 23369 9.3474 0 1 9386400 44170 13399 29183 29921 52138 52138 0.020040686486595405 PAAALLPQAL 10 Unmodified _PAAALLPQAL_ 0 0 0 ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF ENST00000301015.13_2_16:88800318-88802577:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7662658691406 2 482.794935 963.575317 0.4015 0.00019384 -0.54843 -0.00026478 -0.14693 -7.0938E-05 482.7945300916135 40.99 0.19865 40.687 40.622 40.82 -0.30304 16 9 2 0 0 0 0.22667 1 21718 21718 15.847 0 1 4772200 44171 11561 29184 29922 52139 52139 0.09207234828261335 PAAAPQVL 8 Unmodified _PAAAPQVL_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.7263793945312 2 383.726521 765.438489 NaN NaN NaN NaN NaN NaN NaN 58.662 1 58.171 57.671 58.671 -0.49079 0 0 0 0.9706 1 31903 31903 6.3541 0 1 + 44172 17894 29185 29923 52140 52140 0.046387456685692996 PAAAQLDVLR 10 Unmodified _PAAAQLDVLR_ 0 0 0 nc|ENSG00000167994|Q8TBN0-2|RAB3IL1;ENSG00000167994|ENST00000394836|RAB3IL1 nc|ENSG00000167994|Q8TBN0-2|RAB3IL1 nc|ENSG00000167994|Q8TBN0-2|RAB3IL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2721557617188 2 527.306198 1052.59784 0.55422 0.00029224 0.81927 0.00043201 1.3735 0.00072425 527.8075491074126 47.499 0.118 47.146 47.085 47.203 -0.3526 9 5 2 0 0 0 0.23117 1 25483 25483 11.64 0 1 1937800 44173 7697 29186 29924 52141 52141 0.07364834225882078 PAADDAGEPP 10 Unmodified _PAADDAGEPP_ 0 0 0 nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2046813964844 2 470.206347 938.39814 NaN NaN NaN NaN NaN NaN NaN 23.574 1 23.574 23.074 24.074 0 0 0 0 0.96981 1 12020 12020 3.9444 1.0552 1 44174 4582 29187 29925 52142 52142 -0.07352265512520262 PAAEPLLLY 9 Unmodified _PAAEPLLLY_ 0 0 0 REV__ENSG00000112852|ENST00000194155|PCDHB2 REV__ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7816162109375 2 493.781493 985.548434 0.61267 0.00030253 0.18917 9.3408E-05 0.80184 0.00039593 493.7814129774986 92.046 0.22925 91.565 91.491 91.721 -0.48092 15 11 2 0 0 0 0.58865 1 50363 50363 2.0598 1.3694 1 396590 + 44175 18840 29188 29926 52143 52143 0.05508126217091558 PAAGAGHPP 9 Unmodified _PAAGAGHPP_ 0 0 0 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.6977233886719 2 387.698295 773.382037 -0.32291 -0.00012519 -0.62778 -0.00024339 -0.95069 -0.00036858 387.69807285055424 40.611 0.2109 40.611 40.529 40.739 0 21 11 2 0 0 0 0.53666 1 21837 21837 5.2307 2.3415 1 7954800 44176 9398 29189 29927 52144 52144 -0.013718821680981819 PAAGAGHPP 9 Unmodified _PAAGAGHPP_ 0 0 0 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 387.698295 773.382037 0.74196 0.00028766 -0.087785 -3.4034E-05 0.65418 0.00025362 387.6984149205139 45.25 0.45869 40.295 40.045 40.504 -4.9549 -0.15798 0.00019311 NaN 5.2307 50 31 2 NaN NaN NaN NaN 0 NaN NaN 0 17401000 44177 9398 29189 29927 -0.013718821680981819 PAAGPTKL 8 Unmodified _PAAGPTKL_ 0 0 0 ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 ENSG00000266074|ENST00000675386|BAHCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.48974609375 2 377.726521 753.438489 0.40007 0.00015112 0.27254 0.00010295 0.67261 0.00025406 377.72658722313895 36.823 0.20624 36.823 36.71 36.916 0 16 9 2 0 0 0 8.7369 1 19511 19511 11.114 0 1 1915600 44178 10862 29190 29928 52145 52145 0.05190745668573982 PAAHPKKLFPF 11 Unmodified _PAAHPKKLFPF_ 0 0 0 ENST00000335263.9_1_14:102689302-102689416:+|nuORF ENST00000335263.9_1_14:102689302-102689416:+|nuORF ENST00000335263.9_1_14:102689302-102689416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 418.2432556152344 3 418.244881 1251.71281 NaN NaN NaN NaN NaN NaN NaN 21.669 1 18.935 18.435 19.435 -2.7348 0 0 0 0.93598 1 11624 11624 5.4027 1.2132 1 44179 11896 29191 29929 52146 52146 0.0970256342770881 PAAKAIGQ 8 Unmodified _PAAKAIGQ_ 0 0 0 REV__ENSG00000089289|ENST00000356413|IGBP1 REV__ENSG00000089289|ENST00000356413|IGBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.22509765625 2 378.224146 754.433738 NaN NaN NaN NaN NaN NaN NaN 18.79 1 18.79 18.29 19.29 0 0 0 0 0.97444 1 9365 9365 2.5775 0 1 + 44180 17839 29192 29930 52147 52147 0.04669861525815122 PAAKLRPPPE 10 Unmodified _PAAKLRPPPE_ 0 0 0 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4 TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant TAF4|p.Q531Gfs*68|1|0.19|ENSG00000130699|chr20:62012866-62012867|-/GCCT|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7603149414062 2 538.316566 1074.61858 0.084128 4.5287E-05 2.5999 0.0013995 2.684 0.0014448 538.8199890744615 51.117 0.397 50.703 50.459 50.856 -0.41351 47 19 3 0 0 0 0.22667 1 27417 27417 15.847 1.9411 1 4397300 44181 4237 29193 29931 52148 52148 0.0842542460554796 PAAKRVKL 8 Unmodified _PAAKRVKL_ 0 0 0 nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC nc|ENSG00000136997|P01106-1|MYC nc|ENSG00000136997|P01106-1|MYC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.798095703125 2 441.797812 881.581071 0.39784 0.00017576 0.57943 0.00025599 0.97727 0.00043176 441.7980507570389 20.047 0.38216 20.055 19.872 20.255 0.0078487 35 19 2 0 0 0 0.21583 2 10188 10188;10282 67.344 26.895 1 1133300 44182 4892 29194 29932 52149;52150 52149 0.1355437813061826 PAAKRVKL 8 Unmodified _PAAKRVKL_ 0 0 0 nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC nc|ENSG00000136997|P01106-1|MYC nc|ENSG00000136997|P01106-1|MYC MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7977294921875 2 441.797812 881.581071 0.46177 0.00020401 -0.13229 -5.8446E-05 0.32948 0.00014556 441.7977633269069 22.746 0.57119 19.967 19.632 20.203 -2.7784 90 38 3 0 0 0 0.069468 3 12216 12108;12216;12328 123.1 66.555 1 21888000 44183 4892 29194 29932 52151;52152;52153 52152 0.1355437813061826 PAALLFPLD 9 Unmodified _PAALLFPLD_ 0 0 0 ENST00000395340.5_1_20:61521863-61522052:-|nuORF ENST00000395340.5_1_20:61521863-61522052:-|nuORF ENST00000395340.5_1_20:61521863-61522052:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.5568237304688 1 956.545145 955.537869 0.91017 0.00087062 -0.62247 -0.00059543 0.28769 0.00027519 956.5440305889323 101.25 0.18861 95.077 94.974 95.163 -6.1757 34 11 4 0 0 0 0.46577 1 67933 67933 9.3474 1.4373 1 109020000 44184 12766 29195 29933 52154 52154 0.058321435626680795 PAALPPVL 8 Unmodified _PAALPPVL_ 0 0 0 ENST00000592347.5_2_19:28957524-28957629:-|nuORF ENST00000592347.5_2_19:28957524-28957629:-|nuORF ENST00000592347.5_2_19:28957524-28957629:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2476806640625 2 389.247089 776.479626 0.88239 0.00034347 0.4853 0.0001889 1.3677 0.00053237 389.2472300202361 66.51 0.42109 60.334 60.137 60.558 -6.1757 36 23 2 0 0 0 0.70131 1 43214 43214 17.087 5.9721 1 14591000 44185 15719 29196 29934 52155 52155 0.08244506708047084 PAALQRVV 8 Unmodified _PAALQRVV_ 0 0 0 ENST00000428288.2_1_7:27565835-27702463:-|nuORF ENST00000428288.2_1_7:27565835-27702463:-|nuORF ENST00000428288.2_1_7:27565835-27702463:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2665710449219 2 427.266345 852.518136 0.33771 0.00014429 -0.12243 -5.2311E-05 0.21528 9.1981E-05 427.26638286136324 41.359 0.31094 36.751 36.599 36.91 -4.6079 28 20 2 0 0 0 0.5953 1 24810 24810 26.341 1.6674 1 11617000 44186 13210 29197 29935 52156 52156 0.08597812342566158 PAALQRVV 8 Unmodified _PAALQRVV_ 0 0 0 ENST00000428288.2_1_7:27565835-27702463:-|nuORF ENST00000428288.2_1_7:27565835-27702463:-|nuORF ENST00000428288.2_1_7:27565835-27702463:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 427.266345 852.518136 0.44768 0.00019128 -0.11283 -4.8209E-05 0.33485 0.00014307 427.26617223630575 36.846 0.20624 36.846 36.71 36.916 0 0.059908 -0.00036365 NaN 26.341 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 912850 44187 13210 29197 29935 0.08597812342566158 PAALSEAWSY 10 Unmodified _PAALSEAWSY_ 0 0 0 ENST00000519231.5_1_8:66695058-66754164:-|nuORF ENST00000519231.5_1_8:66695058-66754164:-|nuORF ENST00000519231.5_1_8:66695058-66754164:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2637329101562 2 547.761289 1093.50803 0.39572 0.00021676 1.4611 0.00080033 1.8568 0.0010171 548.2636952236016 86.869 0.34588 86.366 86.217 86.563 -0.50318 26 13 3 0 0 0 0.60623 1 47536 47536 10.824 0.75 1 649250 44188 14700 29198 29936 52157 52157 -0.03498840173347162 PAANRRPQF 9 Unmodified _PAANRRPQF_ 0 0 0 REV__ENST00000439374.6_1_1:151025720-151025792:-|nuORF REV__ENST00000439374.6_1_1:151025720-151025792:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7892456054688 2 528.788507 1055.56246 0.60607 0.00032048 1.7665 0.00093411 2.3726 0.0012546 528.7894153086703 73.304 0.36639 72.828 72.63 72.996 -0.47588 30 16 2 0 0 0 0.095405 1 40113 40113 34.102 3.8776 1 1849000 + 44189 27062 29199 29937 52158 52158 0.03690216488757869 PAAPAGYGGY 10 Unmodified _PAAPAGYGGY_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2153015136719 2 462.216517 922.418482 -0.18766 -8.674E-05 -2.5086 -0.0011595 -2.6963 -0.0012463 462.21527404395334 27.771 0.26568 27.771 27.679 27.945 0 22 12 2 0 0 0 0.34789 1 14348 14348 24.674 5.4169 1 1583200 44190 2297 29200 29938 52159 52159 -0.04583050062035454 PAAPIFKGCF 10 Unmodified _PAAPIFKGCF_ 0 0 0 ENST00000497920.1_1_2:97215573-97218047:+|nuORF;nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7030639648438 2 525.775688 1049.53682 NaN NaN NaN NaN NaN NaN NaN 78.466 1 78.466 77.966 78.966 0 0 0 0 0.99091 1 43605 43605 1.6526 0.17072 1 44191 14406 29201 29939 52160 52160 0.014036059221098185 PAAPPLSRS 9 Unmodified _PAAPPLSRS_ 0 0 0 ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2540893554688 2 448.253434 894.492316 NaN NaN NaN NaN NaN NaN NaN 48.936 1 48.936 48.436 49.436 0 0 0 0 0.70111 1 26888 26888 9.3474 0 1 44192 15733 29202 29940 52161 52161 0.04084918100295454 PAAPPLSRS 9 Unmodified _PAAPPLSRS_ 0 0 0 ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF ENST00000593203.1_1_19:10943515-10944133:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.2511596679688 2 448.253434 894.492316 NaN NaN NaN NaN NaN NaN NaN 56.63 1 50.653 50.153 51.153 -5.9769 0 0 0 0.38239 1 36155 36155 20.871 6.2895 1 44193 15733 29202 29940 52162 52162 0.04084918100295454 PAAPSDPL 8 Unmodified _PAAPSDPL_ 0 0 0 REV__ENSG00000147509|ENST00000297313|RGS20 REV__ENSG00000147509|ENST00000297313|RGS20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.806884765625 2 384.200336 766.386119 0.63138 0.00024258 1.5613 0.00059985 2.1927 0.00084243 384.2010186285231 51.192 0.36479 51.192 51.067 51.431 0 24 16 2 0 0 0 8.7369 1 28342 28342 11.114 0 1 1779100 + 44194 20895 29203 29941 52163 52163 -0.006418374650365877 PAARPGHG 8 Unmodified _PAARPGHG_ 0 0 0 REV__ENST00000541676.5_2_16:84213003-84213276:-|nuORF REV__ENST00000541676.5_2_16:84213003-84213276:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.7044677734375 2 381.703912 761.39327 NaN NaN NaN NaN NaN NaN NaN 32.663 1 32.663 32.163 33.163 0 0 0 0 0.97444 1 17082 17082 2.5775 0 1 + 44195 28601 29204 29942 52164 52164 0.0030293992605265885 PAARPGLI 8 Unmodified _PAARPGLI_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.21630859375 2 397.747788 793.481023 0.78785 0.00031337 1.9694 0.00078331 2.7572 0.0010967 397.7482722004882 43.717 0.294 38.953 38.772 39.066 -4.7648 29 17 2 0 0 0 8.7369 1 26586 26586 7.9102 2.1497 1 4339000 44196 1195 29205 29943 52165 52165 0.07602140796814183 PAARRGGIA 9 Unmodified _PAARRGGIA_ 0 0 0 REV__ENST00000392358.6_1_17:80010020-80010110:+|nuORF REV__ENST00000392358.6_1_17:80010020-80010110:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7588500976562 2 434.759218 867.503883 0.28324 0.00012314 0.14836 6.4501E-05 0.4316 0.00018764 434.75936186443 15.12 0.13935 12.592 12.52 12.659 -2.5273 25 19 2 0 0 0 0.54444 1 7731 7731 4.756 0 1 1945300 + 44197 26392 29206 29944 52166 52166 0.06483159914296266 PAASSGPL 8 Unmodified _PAASSGPL_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF;ENST00000587483.5_1_17:42391821-42393770:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MSMS AL20221201_MKP_PDAC_01 4 350.1869812011719 2 350.187229 698.359904 NaN NaN NaN NaN NaN NaN NaN 22.477 1 19.699 19.199 20.199 -2.7784 0 0 0 0.94749 1 12090 12090 11.114 0 1 44198 3285 29207 29945 52167 52167 -0.001341066365171173 PAATQDLILS 10 Unmodified _PAATQDLILS_ 0 0 0 ENSG00000177174|ENST00000317861|OR14C36 ENSG00000177174|ENST00000317861|OR14C36 ENSG00000177174|ENST00000317861|OR14C36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1029.72314453125 1 1028.56225 1027.55498 -0.16752 -0.00017231 0.73891 0.00076002 0.57139 0.00058771 1028.563436927152 68.03 0.18512 68.03 67.914 68.099 0 15 9 2 0 0 0 0.67459 1 37914 37914 5.7319 0 1 586520 44199 8662 29208 29946 52168 52168 0.04230019377814642 PAAVAQQP 8 Unmodified _PAAVAQQP_ 0 0 0 ENST00000035307.6_1_7:150930512-150930569:+|nuORF ENST00000035307.6_1_7:150930512-150930569:+|nuORF ENST00000035307.6_1_7:150930512-150930569:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.1978149414062 2 391.213778 780.413003 NaN NaN NaN NaN NaN NaN NaN 47.098 1 42.017 41.517 42.517 -5.0805 0 0 0 0.9249 1 29197 29197 15.768 0 1 44200 10969 29209 29947 52169 52169 0.014012711461418803 PAAVPALT 8 Unmodified _PAAVPALT_ 0 0 0 REV__ENSG00000157933|ENST00000378536|SKI REV__ENSG00000157933|ENST00000378536|SKI MSMS AL20221201_MKP_PDAC_01 4 370.1636962890625 2 370.221072 738.42759 NaN NaN NaN NaN NaN NaN NaN 43.248 1 38.483 37.983 38.983 -4.7648 0 0 0 0.97348 1 26247 26247 5.7604 0 1 + 44201 21407 29210 29948 52170 52170 0.047913432942777945 PAAVPPEK 8 Unmodified _PAAVPPEK_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MSMS AL20221201_MKP_PDAC_01 4 404.7315673828125 2 404.731803 807.449054 NaN NaN NaN NaN NaN NaN NaN 78.53 1 72.354 71.854 72.854 -6.1757 0 0 0 0.90769 1 51406 51406 18.135 0 1 44202 8080 29211 29949 52171 52171 0.037627283229994646 PAAVPQAL 8 Unmodified _PAAVPQAL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.7269592285156 2 383.726521 765.438489 0.14696 5.6392E-05 0.68116 0.00026138 0.82812 0.00031777 383.7268085892273 58.304 0.38026 58.304 58.131 58.511 0 24 14 2 0 0 0 0.80624 1 32455 32455 2.8892 0 1 1799600 44203 4453 29212 29950 52172 52172 0.046387456685692996 PAAVQAGK 8 Unmodified _PAAVQAGK_ 0 0 0 REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 741.4215698242188 1 741.425365 740.418088 0.59115 0.0004383 -1.1979 -0.00088814 -0.60673 -0.00044984 741.424469794078 81.129 0.34935 80.636 80.487 80.837 -0.49247 34 22 2 0 0 0 0.80044 1 44444 44444 6.3541 1.1234 1 4665600 + 44204 28825 29213 29951 52173 52173 0.037495750087600754 PAAVQAGK 8 Unmodified _PAAVQAGK_ 0 0 0 REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 741.425365 740.418088 0.59115 0.0004383 -1.1979 -0.00088814 -0.60673 -0.00044984 741.424469794078 81.129 0.34935 80.636 80.487 80.837 -0.49247 0 0 NaN 6.3541 34 22 2 NaN NaN NaN NaN 0 NaN NaN 0 4665600 + 44205 28825 29213 29951 0.037495750087600754 PAAWLPTIT 9 Unmodified _PAAWLPTIT_ 0 0 0 REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2 REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2713928222656 2 485.273835 968.533118 -0.28358 -0.00013761 -1.5246 -0.00073983 -1.8081 -0.00087744 485.2728918379174 19.539 0.10593 19.539 19.487 19.593 0 19 16 2 0 0 0 0.18465 1 9782 9782 24.674 6.5389 1 660210 + 44206 17028 29214 29952 52174 52174 0.04759259419893169 PAAWLPTIT 9 Unmodified _PAAWLPTIT_ 0 0 0 REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2 REV__nc|ENSG00000008735|Q13387-3|MAPK8IP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2558288574219 2 485.273835 968.533118 -0.28358 -0.00013761 -1.5246 -0.00073983 -1.8081 -0.00087744 485.2728918379174 19.539 0.10593 19.539 19.487 19.593 0 19 16 2 0 0 0 0.13712 1 9768 9768 30.225 9.7712 1 660210 + 44207 17028 29214 29952 52175 52175 0.04759259419893169 PAAYSLVAP 9 Unmodified _PAAYSLVAP_ 0 0 0 nc|ENSG00000159409|Q5SZQ8-4|CELF3;nc|ENSG00000159409|Q5SZQ8-3|CELF3;nc|ENSG00000159409|Q5SZQ8-2|CELF3;ENSG00000159409|ENST00000290583|CELF3 nc|ENSG00000159409|Q5SZQ8-4|CELF3 nc|ENSG00000159409|Q5SZQ8-4|CELF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 890.498046875 1 888.482545 887.475269 0.062783 5.5781E-05 1.2967 0.0011521 1.3595 0.0012079 888.4832126277319 91.16 0.47851 84.985 84.755 85.233 -6.1757 67 27 3 0 0 0 0.2001 1 60161 60161 23.148 1.4018 1 27311000 44208 6654 29215 29953 52176 52176 0.027029974944639434 PACWHGSSA 9 Unmodified _PACWHGSSA_ 0 0 0 REV__ENST00000472900.5_1_9:79003480-79009387:-|nuORF REV__ENST00000472900.5_1_9:79003480-79009387:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 458.1938781738281 2 458.192519 914.370486 NaN NaN NaN NaN NaN NaN NaN 18.586 1 15.965 15.465 16.465 -2.6215 0 0 0 0.82739 1 9800 9800 4.3292 0 1 + 44209 27527 29216 29954 52177 52177 -0.09012447253735445 PADEDTSDE 9 Unmodified _PADEDTSDE_ 0 0 0 REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A REV__nc|ENSG00000139116|Q7Z4S6-6|KIF21A MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.6813659667969 2 489.680359 977.346164 0.67725 0.00033164 -0.14916 -7.304E-05 0.52809 0.0002586 489.6802970049244 56.576 0.523 50.6 50.32 50.843 -5.9769 115 29 6 0 0 0 0.58466 1 36012 36012 2.3027 0 1 125470000 + 44210 20384 29217 29955 52178 52178 -0.14341473716945075 PADGDVAAQWV 11 Unmodified _PADGDVAAQWV_ 0 0 0 ENSG00000203546|ENST00000547378|unknown;ENSG00000129480|ENST00000310850|DTD2 ENSG00000203546|ENST00000547378|unknown ENSG00000203546|ENST00000547378|unknown MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.5161437988281 3 376.848856 1127.52474 1.0743 0.00040483 1.9455 0.00073314 3.0197 0.001138 376.8501380966913 29.723 0.097778 26.421 26.345 26.443 -3.3016 7 5 2 0 0 0 0.28752 1 16716 16716 7.4771 2.4295 1 26083000 44211 4141 29218 29956 52179 52179 -0.03392339287370305 PADKGRPW 8 Unmodified _PADKGRPW_ 0 0 0 REV__ENSG00000189269|ENST00000317749|DRICH1 REV__ENSG00000189269|ENST00000317749|DRICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.4830322265625 1 926.484276 925.477 0.44857 0.00041559 -3.3057 -0.0030627 -2.8571 -0.0026471 926.4822746598089 66.383 0.18915 66.383 66.281 66.47 0 10 7 2 0 0 0 0.80143 1 37033 37033 5.7604 0 1 456370 + 44212 23773 29219 29957 52180 52180 0.011280513030897055 PADKSSREYT 10 Unmodified _PADKSSREYT_ 0 0 0 ENSG00000269964|ENST00000684080|MEI4 ENSG00000269964|ENST00000684080|MEI4 ENSG00000269964|ENST00000684080|MEI4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.1909484863281 3 385.187649 1152.54112 1.6414 0.00063225 2.3643 0.00091071 4.0057 0.001543 385.1885160382038 35.82 0.59386 31.627 31.336 31.93 -4.1928 127 37 4 0 0 0 0.38092 1 20685 20685 14.957 4.6419 1 42014000 44213 10882 29220 29958 52181 52181 -0.029052581212681616 PADLADDSSTL 11 Unmodified _PADLADDSSTL_ 0 0 0 REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L REV__nc|ENSG00000100014|Q69YQ0-2|SPECC1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7521362304688 2 552.756401 1103.49825 NaN NaN NaN NaN NaN NaN NaN 50.058 1 50.058 49.558 50.558 0 0 0 0 0.77961 1 27578 27578 13.042 0 1 + 44214 18002 29221 29959 52182 52182 -0.049360729693717076 PADLLLKLF 9 Unmodified _PADLLLKLF_ 0 0 0 REV__ENSG00000099958|ENST00000318109|DERL3 REV__ENSG00000099958|ENST00000318109|DERL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.32080078125 2 515.320786 1028.62702 0.62697 0.00032309 -0.88485 -0.00045598 -0.25788 -0.00013289 515.3201961045212 73.652 0.61694 73.176 72.932 73.549 -0.47588 93 28 6 0 0 0 0.5029 1 40459 40459 7.2892 2.0586 1 180650000 + 44215 17995 29222 29960 52183 52183 0.11384978522164602 PADNKPEEVQP 11 Unmodified _PADNKPEEVQP_ 0 0 0 ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51624427-51671126:+|nuORF ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080|ENST00000684192|RAD54L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2989501953125 2 612.298767 1222.58298 NaN NaN NaN NaN NaN NaN NaN 86.418 1 85.915 85.415 86.415 -0.50318 0 0 0 0.86932 1 47285 47285 8.7454 2.5396 1 44216 7134 29223 29961 52184 52184 -0.019407024327620093 PADRMHPFL 9 Unmodified _PADRMHPFL_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;nc|ENSG00000129219|O14939-3|PLD2;ENST00000574268.1_1_17:4710512-4711565:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.771240234375 2 542.273844 1082.53313 0.04381 2.3757E-05 -1.0534 -0.00057123 -1.0096 -0.00054747 542.2734501183463 78.81 0.7852 78.324 78.084 78.87 -0.48596 114 32 5 0 0 0 0.54444 1 43420 43420 4.756 1.8668 1 20784000 44217 4122 29224 29962 52185 52185 -0.004830638517432817 PADTEPPPLL 10 Unmodified _PADTEPPPLL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.279052734375 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 95.679 1 95.679 95.179 96.179 0 0 0 0 0.96981 1 52882 52882 3.9444 1.0552 1 44218 8403 29225 29963 52186 52186 0.02174617003538515 PADTMVQYMEL 11 Unmodified _PADTMVQYMEL_ 0 0 0 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2942504882812 2 649.293782 1296.57301 0.014792 9.6041E-06 2.51 0.0016297 2.5248 0.0016393 649.2951072528242 69.499 0.18178 69.499 69.353 69.534 0 12 7 2 0 0 0 0.58219 1 38738 38738 12.241 0.74595 1 525210 44219 3809 29226 29964 52187 52187 -0.06341349753984105 PADVSPINYSL 11 Unmodified _PADVSPINYSL_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2994384765625 2 588.300778 1174.587 -0.56499 -0.00033239 -0.99869 -0.00058753 -1.5637 -0.00091992 588.3000693276466 29.834 0.21054 29.834 29.804 30.015 0 15 11 2 0 0 0 0.68427 1 15506 15506 5.7319 0 1 2875000 44220 5311 29227 29965 52188 52188 0.006693870609751684 PAEAFFPLL 9 Unmodified _PAEAFFPLL_ 0 0 0 REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7767333984375 2 502.776211 1003.53787 1.1431 0.00057475 -0.79978 -0.00040211 0.34337 0.00017264 502.7756559796546 50.494 0.69587 44.955 44.531 45.226 -5.5391 144 44 5 0 0 0 0.14602 1 31553 31553 28.487 8.0332 1 317360000 + 44221 27602 29228 29966 52189 52189 0.0362414356266072 PAEAFFPLL 9 Unmodified _PAEAFFPLL_ 0 0 0 REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.2587890625 2 502.776211 1003.53787 1.1431 0.00057475 -0.79978 -0.00040211 0.34337 0.00017264 502.7756559796546 50.494 0.69587 44.955 44.531 45.226 -5.5391 144 44 5 0 0 0 0.16785 1 31697 31697 23.148 3.7094 1 317360000 + 44222 27602 29228 29966 52190 52190 0.0362414356266072 PAEAGHAPP 9 Unmodified _PAEAGHAPP_ 0 0 0 ENST00000405659.5_2_22:30765540-30766382:+|nuORF ENST00000405659.5_2_22:30765540-30766382:+|nuORF ENST00000405659.5_2_22:30765540-30766382:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7087097167969 2 423.70886 845.403166 -0.54505 -0.00023094 0.099375 4.2106E-05 -0.44568 -0.00018884 423.7088189219197 34.948 0.28257 34.948 34.827 35.11 0 20 14 2 0 0 0 0.37804 1 18458 18458 13.508 13.508 1 2080600 44223 12924 29229 29967 52191 52191 -0.025719168592331698 PAEDEKVME 9 Unmodified _PAEDEKVME_ 0 0 0 REV__nc|ENSG00000152409|Q8N9B5-2|JMY REV__nc|ENSG00000152409|Q8N9B5-2|JMY MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7767333984375 2 524.23679 1046.45903 0.58414 0.00030623 1.7888 0.00093776 2.373 0.001244 524.2373524935223 73.335 0.36699 72.859 72.651 73.018 -0.47588 29 16 2 0 0 0 0.20727 1 40063 40063 7.9102 0.62092 1 2156600 + 44224 21116 29230 29968 52192 52192 -0.06234496524575661 PAEDQQDSAF 10 Unmodified _PAEDQQDSAF_ 0 0 0 REV__ENSG00000275591|ENST00000618742|XKR5 REV__ENSG00000275591|ENST00000618742|XKR5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2717895507812 2 554.233093 1106.45163 0.9337 0.00051749 -3.8087 -0.0021109 -2.875 -0.0015934 554.2309962481294 75.202 0.28497 74.725 74.559 74.844 -0.47714 15 12 2 0 0 0 0.23566 1 41212 41212 7.2892 3.6927 1 960590 + 44225 24653 29231 29969 52193 52193 -0.09733512800653443 PAEDQQDSAF 10 Unmodified _PAEDQQDSAF_ 0 0 0 REV__ENSG00000275591|ENST00000618742|XKR5 REV__ENSG00000275591|ENST00000618742|XKR5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 554.233093 1106.45163 0.66212 0.00036697 -3.9983 -0.002216 -3.3362 -0.001849 554.2308406447777 74.727 0.24293 74.727 74.582 74.825 0 0.00069759 -0.00010059 NaN 7.2892 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 682080 + 44226 24653 29231 29969 -0.09733512800653443 PAEEDVYSWWR 11 Unmodified _PAEEDVYSWWR_ 0 0 0 ENST00000490321.1_1_9:77702555-77702991:-|nuORF ENST00000490321.1_1_9:77702555-77702991:-|nuORF ENST00000490321.1_1_9:77702555-77702991:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 719.3226928710938 2 719.325316 1436.63608 NaN NaN NaN NaN NaN NaN NaN 56.547 1 56.062 55.562 56.562 -0.48554 0 0 0 0.93224 1 30710 30710 5.7319 0.83484 1 44227 14256 29232 29970 52194 52194 -0.06477324650086302 PAEEREDEGA 10 Unmodified _PAEEREDEGA_ 0 0 0 ENSG00000068985|ENST00000376150|PAGE1 ENSG00000068985|ENST00000376150|PAGE1 ENSG00000068985|ENST00000376150|PAGE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7356567382812 2 551.736 1101.45745 NaN NaN NaN NaN NaN NaN NaN 70.394 1 69.915 69.415 70.415 -0.47903 0 0 0 0.91523 1 38500 38500 7.2892 0 1 44228 994 29233 29971 52195 52195 -0.08922414288986147 PAEESHLSL 9 Unmodified _PAEESHLSL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.746826171875 2 491.745639 981.476725 0.50298 0.00024734 3.091 0.00152 3.594 0.0017673 491.7475749170656 44.081 0.38889 39.316 39.092 39.481 -4.7648 38 25 2 0 0 0 0.03327 1 26877 26877 53.576 0 1 18087000 44229 6155;16276 29234 29972 52196 52196 -0.014754132074131121 PAEHRQGGGDF 11 Unmodified _PAEHRQGGGDF_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7703247070312 2 585.767968 1169.52138 NaN NaN NaN NaN NaN NaN NaN 83.984 1 83.484 82.984 83.984 -0.49961 0 0 0 0.93933 1 45964 45964 2.9952 0.93549 1 44230 996 29235 29973 52197 52197 -0.05659589341371429 PAEHRQGGGDF 11 Unmodified _PAEHRQGGGDF_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.7640991210938 2 585.767968 1169.52138 NaN NaN NaN NaN NaN NaN NaN 84.097 1 83.597 83.097 84.097 -0.49961 0 0 0 0.93224 1 46025 46025 5.7319 2.4505 1 44231 996 29235 29973 52198 52198 -0.05659589341371429 PAEITLTWQQD 11 Unmodified _PAEITLTWQQD_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.325927734375 2 651.322242 1300.62993 1.2885 0.00083921 3.8921 0.002535 5.1806 0.0033742 651.3247174777837 100.16 0.13131 93.984 93.898 94.03 -6.1757 16 7 3 0 0 0 0.48742 1 66925 66925 27.629 10.687 1 20099000 44232 10306 29236 29974 52199 52199 -0.008358428816109154 PAELAEELS 9 Unmodified _PAELAEELS_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5286865234375 1 958.472768 957.465492 0.62791 0.00060184 -2.3506 -0.002253 -1.7227 -0.0016512 958.4705390815681 46.166 0.37373 46.166 45.939 46.313 0 31 17 3 0 0 0 0.41742 1 25164 25164 11.64 0 1 5142300 + 44233 19145 29237 29975 52200 52200 -0.014942353015612753 PAELMLENYD 10 Unmodified _PAELMLENYD_ 0 0 0 nc|ENSG00000001497|Q9Y4W2-3|LAS1L;nc|ENSG00000001497|Q9Y4W2-2|LAS1L;ENSG00000001497|ENST00000374811|LAS1L nc|ENSG00000001497|Q9Y4W2-3|LAS1L nc|ENSG00000001497|Q9Y4W2-3|LAS1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.849365234375 3 398.849757 1193.52744 NaN NaN NaN NaN NaN NaN NaN 50.81 1 50.81 50.31 51.31 0 0 0 0 0.92825 1 28027 28027 3.5871 0 1 44234 256 29238 29976 52201 52201 -0.061582519447256345 PAEPGCCSPLP 11 Unmodified _PAEPGCCSPLP_ 0 0 0 REV__ENST00000402675.5_1_3:3168720-3169299:+|nuORF REV__ENST00000402675.5_1_3:3168720-3169299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7362060546875 2 535.735902 1069.45725 -0.42234 -0.00022626 0.23619 0.00012653 -0.18615 -9.9729E-05 535.7362084875937 34.415 0.33365 34.415 34.226 34.56 0 31 16 3 0 0 0 0.63851 1 18110 18110 9.3831 0 1 3847500 + 44235 26617 29239 29977 52202 52202 -0.07469828814191715 PAEPVHPRSLR 11 Unmodified _PAEPVHPRSLR_ 0 0 0 ENST00000342232.4_1_8:75233190-75233559:-|nuORF ENST00000342232.4_1_8:75233190-75233559:-|nuORF ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.822021484375 2 629.854378 1257.6942 NaN NaN NaN NaN NaN NaN NaN 99.447 1 99.41 98.91 99.91 -0.036301 0 0 0 0.93224 1 55231 55231 5.7319 1.4026 1 44236 11978 29240 29978 52203 52203 0.07566401785834387 PAERTQATL 9 Unmodified _PAERTQATL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2789001464844 2 493.766906 985.519259 0.35343 0.00017451 -0.56922 -0.00028106 -0.21579 -0.00010655 493.76596022057714 69.093 0.41086 68.613 68.309 68.719 -0.48071 34 17 3 0 0 0 0.20528 1 37615 37615 8.5933 4.264 1 2707500 44237 2181 29241 29979 52204 52204 0.025919819208070294 PAERWSWNLQR 11 Unmodified _PAERWSWNLQR_ 0 0 0 REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF REV__ENST00000282096.8_1_11:14665308-14793517:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.5820617675781 3 481.581103 1441.72148 -0.084768 -4.0823E-05 1.8921 0.0009112 1.8073 0.00087038 481.5820179129821 25.64 0.19663 22.689 22.557 22.754 -2.9511 13 10 2 0 0 0 0.6889 1 14027 14027 2.4348 0 1 4212800 + 44238 25202 29242 29980 52205 52205 0.018288853262220073 PAESVLNYF 9 Unmodified _PAESVLNYF_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7796630859375 2 520.258382 1038.50221 0.69109 0.00035955 -0.85704 -0.00044588 -0.16595 -8.6339E-05 520.2574720049976 81.235 0.18461 80.743 80.7 80.884 -0.49247 18 8 3 0 0 0 0.20727 1 44558 44558 7.9102 2.1497 1 1010500 44239 10169 29243 29981 52206 52206 -0.015499386850024166 PAESYTFFI 9 Unmodified _PAESYTFFI_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.760009765625 2 537.760758 1073.50696 NaN NaN NaN NaN NaN NaN NaN 77.733 1 77.785 77.285 78.285 0.052452 0 0 0 0.23581 1 42910 42910 28.487 10.352 1 44240 1696 29244 29982 52207 52207 -0.02685054542234866 PAETDLFFL 9 Unmodified _PAETDLFFL_ 0 0 0 REV__ENST00000306688.7_1_17:79981178-79981643:+|nuORF REV__ENST00000306688.7_1_17:79981178-79981643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7681274414062 2 526.768583 1051.52261 0.33061 0.00017415 0.090116 4.747E-05 0.42073 0.00022163 526.7685393475962 92.292 0.46558 91.811 91.525 91.991 -0.48092 37 21 2 0 0 0 0.58865 1 50433 50433 2.0598 0 1 512230 + 44241 25382 29245 29983 52208 52208 -0.0010876802518851036 PAEYPISI 8 Unmodified _PAEYPISI_ 0 0 0 REV__nc|ENSG00000175482|Q9HCU8-2|POLD4 REV__nc|ENSG00000175482|Q9HCU8-2|POLD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 890.4701538085938 1 889.466561 888.459284 -0.41274 -0.00036712 1.2247 0.0010894 0.812 0.00072225 889.4677732251411 78.898 0.29104 78.412 78.238 78.529 -0.48596 17 11 2 0 0 0 0.80232 1 43202 43202 5.2307 0 1 565810 + 44242 29796 29246 29984 52209 52209 0.01059291257570294 PAFCCYPESC 10 Unmodified _PAFCCYPESC_ 0 0 0 ENST00000374500.9_1_6:33385387-33385937:-|nuORF ENST00000374500.9_1_6:33385387-33385937:-|nuORF ENST00000374500.9_1_6:33385387-33385937:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2000122070312 2 560.200838 1118.38712 -0.26989 -0.00015119 0.081884 4.5871E-05 -0.18801 -0.00010532 560.2007807239347 34.849 0.82124 34.849 34.308 35.129 0 142 42 4 0 0 0 0.68719 1 18363 18363 4.3292 0 1 15960000 44243 12447 29247 29985 52210 52210 -0.1673345047431667 PAFCVRSF 8 Unmodified _PAFCVRSF_ 0 0 0 REV__ENST00000568322.5_1_16:71913820-71918510:-|nuORF REV__ENST00000568322.5_1_16:71913820-71918510:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.2322387695312 2 463.73128 925.448008 1.5787 0.00073211 -3.8775 -0.0017981 -2.2987 -0.001066 463.7294939844931 100.93 0.078499 94.757 94.701 94.78 -6.1757 6 4 2 0 0 0 8.7369 1 67621 67621 6.3541 0.59368 1 6368500 + 44244 28865 29248 29986 52211 52211 -0.01769809317556792 PAFGSSRGRG 10 Unmodified _PAFGSSRGRG_ 0 0 0 ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENST00000473638.5_1_22:39708982-39709710:-|nuORF ENST00000473638.5_1_22:39708982-39709710:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2547607421875 2 496.25704 990.499526 0.65805 0.00032656 -1.451 -0.00072007 -0.79295 -0.00039351 496.25566881339745 28.241 0.67532 25.093 24.935 25.61 -3.1482 45 35 2 0 0 0 0.46514 1 15654 15654 18.146 1.0335 1 13451000 44245 13923 29249 29987 52212 52212 0.0038965070071981245 PAFIQHKV 8 Unmodified _PAFIQHKV_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2740173339844 2 470.27417 938.533787 NaN NaN NaN NaN NaN NaN NaN 106.35 1 106.26 105.76 106.76 -0.088829 0 0 0 0.97444 1 57812 57812 2.5775 0.73324 1 44246 9115 29250 29988 52213 52213 0.06206098859604481 PAFLFKLLL 9 Unmodified _PAFLFKLLL_ 0 0 0 REV__ENST00000420027.3_1_20:48698513-48698663:-|nuORF REV__ENST00000420027.3_1_20:48698513-48698663:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3436889648438 2 531.341521 1060.66849 0.42594 0.00022632 3.5614 0.0018923 3.9873 0.0021186 531.3433001740135 100.82 0.10548 100.77 100.71 100.82 -0.04216 6 3 2 0 0 0 0.58466 1 56026 56026 2.3027 0 1 2027100 + 44247 26827 29251 29989 52214 52214 0.14058159281512417 PAFLFLHQAL 10 Unmodified _PAFLFLHQAL_ 0 0 0 ENST00000380548.8_1_9:18770742-18777100:+|nuORF ENST00000380548.8_1_9:18770742-18777100:+|nuORF ENST00000380548.8_1_9:18770742-18777100:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.221923828125 3 386.221965 1155.64407 1.559 0.0006021 -0.91418 -0.00035308 0.64477 0.00024903 386.55612217430877 91.851 0.45657 85.675 85.416 85.872 -6.1757 37 25 2 0 0 0 0.65023 1 60667 60667 8.4443 0 1 9212400 44248 12599 29252 29990 52215 52215 0.07246899127994766 PAFLGDGPSEI 11 Unmodified _PAFLGDGPSEI_ 0 0 0 REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF REV__ENST00000559530.1_1_15:32058089-32058740:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7822265625 2 551.774396 1101.53424 1.379 0.00076091 1.8148 0.0010014 3.1938 0.0017623 551.7746991534748 98.104 0.2271 91.929 91.8 92.027 -6.1757 39 14 4 0 0 0 0.5111 1 65087 65087 15.847 0 1 60983000 + 44249 28817 29253 29991 52216 52216 -0.012465710018659593 PAFPAQVSSF 10 Unmodified _PAFPAQVSSF_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.2927856445312 2 525.766374 1049.5182 0.64565 0.00033946 1.0165 0.00053443 1.6621 0.0008739 525.7673955635373 65.109 0.55936 58.934 58.803 59.362 -6.1757 55 30 3 0 0 0 0.22667 1 42528 42528 15.847 5.0233 1 13427000 44250 3538 29254 29992 52217 52217 -0.004582324480907118 PAFPVPLQSQ 10 Unmodified _PAFPVPLQSQ_ 0 0 0 ENST00000454960.1_3_6:36165392-36168233:+|nuORF;ENST00000446974.1_1_6:36165215-36168233:+|nuORF ENST00000454960.1_3_6:36165392-36168233:+|nuORF ENST00000454960.1_3_6:36165392-36168233:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8676452636719 3 361.865958 1082.57605 NaN NaN NaN NaN NaN NaN NaN 2.1133 1 -0.36863 -0.86863 0.13137 -2.482 0 0 0 0.99248 1 1084 1084 0.62683 0 1 44251 13474 29255 29993 52218 52218 0.038060294773458736 PAFRRRRARKK 11 Unmodified _PAFRRRRARKK_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1;ENST00000568808.5_1_15:55653104-55669251:-|nuORF nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 721.4614868164062 2 721.458002 1440.90145 NaN NaN NaN NaN NaN NaN NaN 87.74 1 87.236 86.736 87.736 -0.50423 0 0 0 0.94301 1 47993 47993 0.35063 0.043601 1 44252 10833 29256 29994 52219 52219 0.1986365384450437 PAFSDSRECK 10 Carbamidomethyl (C) _PAFSDSREC(Carbamidomethyl (C))K_ PAFSDSREC(1)K PAFSDSREC(50)K 0 1 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7733154296875 2 598.771862 1195.52917 0.070674 4.2318E-05 -0.05118 -3.0645E-05 0.019494 1.1673E-05 598.772337115798 70.059 0.29213 69.579 69.401 69.693 -0.47903 27 16 2 0 0 0 0.087043 1 38291 38291 49.554 7.2418 1 4360600 44253 2318 29257 29995 52220 52220 230 -0.06077198136131301 PAFSDSRECK 10 Carbamidomethyl (C) _PAFSDSREC(Carbamidomethyl (C))K_ PAFSDSREC(1)K PAFSDSREC(58)K 0 1 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7715454101562 2 598.771862 1195.52917 0.31672 0.00018964 -0.91383 -0.00054718 -0.59711 -0.00035753 598.7710378148911 70.573 0.24684 70.095 70.001 70.248 -0.47735 40 25 2 0 0 0 0.051223 2 38580 38580;38582 57.722 15.409 1 6027700 44254 2318 29257 29995 52221;52222 52221 230 -0.06077198136131301 PAFSDSRECK 10 Carbamidomethyl (C) _PAFSDSREC(Carbamidomethyl (C))K_ PAFSDSREC(1)K PAFSDSREC(46)K 0 1 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7702026367188 2 598.771862 1195.52917 0.42739 0.00025591 -1.3028 -0.00078008 -0.8754 -0.00052417 598.7711209942546 70.826 0.36111 70.349 70.186 70.547 -0.47736 37 16 3 0 0 0 0.10424 1 38697 38697 45.7 7.524 1 3060900 44255 2318 29257 29995 52223 52223 230 -0.06077198136131301 PAFSDSRECK 10 Carbamidomethyl (C) _PAFSDSREC(Carbamidomethyl (C))K_ PAFSDSREC(1)K PAFSDSREC(63)K 0 1 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.771240234375 2 598.771862 1195.52917 0.28119 0.00016837 0.057663 3.4527E-05 0.33885 0.00020289 598.7720006326557 70.077 0.40054 70.112 70.023 70.424 0.035515 35 19 2 0 0 0 0.041224 1 38553 38553 62.573 24.397 1 5024500 44256 2318 29257 29995 52224 52224 230 -0.06077198136131301 PAFSDSRECK 10 Carbamidomethyl (C) _PAFSDSREC(Carbamidomethyl (C))K_ 0 1 0 ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 598.771862 1195.52917 0.039255 2.3505E-05 -4.861 -0.0029106 -4.8217 -0.0028871 598.7673586032114 69.455 0.11184 69.455 69.423 69.534 0 -0.062369 -0.0050419 NaN 49.554 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 403360 44257 2318 29257 29995 230 -0.06077198136131301 PAFSMSRSPAF 11 Unmodified _PAFSMSRSPAF_ 0 0 0 ENSG00000197768|ENST00000412566|STPG3;nc|ENSG00000197768|Q8N7X2-3|STPG3;nc|ENSG00000197768|Q8N7X2|STPG3;nc|ENSG00000197768|Q8N7X2-1|STPG3 ENSG00000197768|ENST00000412566|STPG3 ENSG00000197768|ENST00000412566|STPG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.287109375 2 599.289691 1196.56483 0.011874 7.1159E-06 1.1593 0.00069473 1.1711 0.00070184 599.2904380381069 56.71 0.86357 50.733 50.266 51.13 -5.9769 101 50 3 0 0 0 0.12183 1 36415 36415 39.95 3.8227 1 56157000 44258 10001 29258 29996 52225 52225 -0.02559115888470842 PAFSSPYPL 9 Unmodified _PAFSSPYPL_ 0 0 0 REV__nc|ENSG00000122877|P11161-2|EGR2 REV__nc|ENSG00000122877|P11161-2|EGR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7318115234375 2 489.750193 977.485833 -0.18533 -9.0766E-05 -0.61721 -0.00030228 -0.80254 -0.00039304 489.7503100068989 23.15 0.17149 23.15 23.071 23.243 0 13 8 2 0 0 0 0.20528 1 11778 11778 8.5933 0 1 200920 + 44259 19361 29259 29997 52226 52226 -0.0038101985109051384 PAFSTLLSFY 10 Unmodified _PAFSTLLSFY_ 0 0 0 REV__ENSG00000157703|ENST00000674285|SVOPL REV__ENSG00000157703|ENST00000674285|SVOPL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 572.792236328125 2 573.297507 1144.58046 0.23885 0.00013693 0.022056 1.2644E-05 0.26091 0.00014958 573.7999959766079 93.274 1.069 87.098 86.534 87.603 -6.1757 267 72 5 0 0 0 0.23117 1 61345 61345 11.64 6.7433 1 521850000 + 44260 21397 29260 29998 52227 52227 0.013954939002587707 PAFTALLTT 9 Unmodified _PAFTALLTT_ 0 0 0 ENSG00000124490|ENST00000339139|CRISP2;nc|ENSG00000096006|P54108|CRISP3;ENSG00000096006|ENST00000263045|CRISP3;nc|ENSG00000096006|P54108-3|CRISP3;nc|ENSG00000124490|P16562-2|CRISP2 ENSG00000124490|ENST00000339139|CRISP2 ENSG00000124490|ENST00000339139|CRISP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5322265625 1 934.52441 933.517133 0.51041 0.00047699 -0.48932 -0.00045728 0.021093 1.9712E-05 934.5238892328973 68.204 0.38139 67.722 67.518 67.9 -0.48161 37 17 3 0 0 0 0.41742 1 37269 37269 11.64 5.2862 1 4489900 44261 1665 29261 29999 52228 52228 0.0477155318297946 PAFTMSSCSF 10 Unmodified _PAFTMSSCSF_ 0 0 0 nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7727661132812 2 539.222628 1076.4307 0.32669 0.00017616 3.7912 0.0020443 4.1179 0.0022204 539.2248670870126 37.158 0.2614 37.158 36.997 37.259 0 15 12 2 0 0 0 0.23489 1 19712 19712 7.9102 0 1 715450 44262 10894 29262 30000 52229 52229 -0.10445517705534257 PAFTWWERGE 10 Unmodified _PAFTWWERGE_ 0 0 0 ENST00000589874.2_1_19:1432091-1433000:+|nuORF ENST00000589874.2_1_19:1432091-1433000:+|nuORF ENST00000589874.2_1_19:1432091-1433000:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.8681030273438 3 426.86825 1277.58292 NaN NaN NaN NaN NaN NaN NaN 17.986 1 17.986 17.486 18.486 0 0 0 0 0.98914 1 8909 8909 0.77653 0.078866 1 44263 15679 29263 30001 52230 52230 -0.04476657642112514 PAFVQLNYH 9 Unmodified _PAFVQLNYH_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2235412597656 3 363.522303 1087.54508 -0.19518 -7.0951E-05 -0.12519 -4.5509E-05 -0.32037 -0.00011646 363.52228211608997 35.802 0.58524 35.827 35.602 36.187 0.024971 57 27 3 0 0 0 0.21404 1 19010 19010 5.2969 0 1 6158900 + 44264 20626 29264 30002 52231 52231 0.00480876163078392 PAGACLRL 8 Unmodified _PAGACLRL_ 0 0 0 REV__ENST00000488906.1_1_17:45236559-45237015:-|nuORF REV__ENST00000488906.1_1_17:45236559-45237015:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.7259826660156 2 400.725998 799.437443 NaN NaN NaN NaN NaN NaN NaN 24.929 1 22.046 21.546 22.546 -2.8831 0 0 0 0.93066 1 13606 13606 14.582 0 1 + 44265 27850 29265 30003 52232 52232 0.02970208028000343 PAGAGGGS 8 Unmodified _PAGAGGGS_ 0 0 0 ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2615356445312 1 573.262716 572.255439 0.69327 0.00039742 -0.86986 -0.00049866 -0.1766 -0.00010124 573.2606553081051 71.771 0.26751 71.295 71.147 71.415 -0.47609 21 10 3 0 0 0 0.80992 1 39301 39301 0.69038 0 1 1243900 44266 4513 29266 30004 52233 52233 -0.047798083932434565 PAGANMAAAYF 11 Unmodified _PAGANMAAAYF_ 0 0 0 REV__ENSG00000110203|ENST00000611028|FOLR3 REV__ENSG00000110203|ENST00000611028|FOLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2515869140625 2 542.250034 1082.48552 0.2243 0.00012163 0.48851 0.00026489 0.71281 0.00038652 542.2504699623358 87.077 0.23389 87.077 86.953 87.187 0 27 15 2 0 0 0 0.67371 1 48202 48202 6.7232 1.4925 1 560210 + 44267 18697 29267 30005 52234 52234 -0.05242762842635784 PAGANMAAAYF 11 Unmodified _PAGANMAAAYF_ 0 0 0 REV__ENSG00000110203|ENST00000611028|FOLR3 REV__ENSG00000110203|ENST00000611028|FOLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2527465820312 2 542.250034 1082.48552 0.64058 0.00034736 2.6944 0.001461 3.335 0.0018084 542.2514283080656 50.213 0.37943 49.821 49.532 49.911 -0.3923 34 18 2 0 0 0 0.6249 1 27040 27040 10.074 1.4806 1 2909600 + 44268 18697 29267 30005 52235 52235 -0.05242762842635784 PAGAPHKK 8 Unmodified _PAGAPHKK_ 0 0 0 REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF REV__ENST00000453072.5_1_3:184056644-184059926:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2372131347656 2 403.237587 804.460622 0.2431 9.8029E-05 -0.31808 -0.00012826 -0.074978 -3.0234E-05 403.237400649577 23.159 0.56389 20.381 20.117 20.681 -2.7784 72 44 2 0 0 0 0.65867 2 12424 12424;12531 20.871 9.2309 1 15047000 + 44269 27228 29268 30006 52236;52237 52236 0.050569701369909126 PAGARNPPQ 9 Unmodified _PAGARNPPQ_ 0 0 0 REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF REV__ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 907.9799194335938 1 907.47444 906.467164 0.91576 0.00083103 2.8812 0.0026146 3.797 0.0034457 907.4775173487046 63.009 0.27333 56.834 56.676 56.949 -6.1757 17 13 2 0 0 0 0.07019 1 40670 40670 21.747 0 1 12293000 + 44270 17300 29269 30007 52238 52238 0.010188632977019552 PAGDCRVH 8 Unmodified _PAGDCRVH_ 0 0 0 ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.69921875 2 427.700512 853.38647 NaN NaN NaN NaN NaN NaN NaN 61.716 1 61.716 61.216 62.216 0 0 0 0 0.97444 1 34409 34409 2.5775 0.51773 1 44271 6792 29270 30008 52239 52239 -0.046087410168411225 PAGDPGYISYH 11 Unmodified _PAGDPGYISYH_ 0 0 0 REV__ENSG00000119681|ENST00000261978|LTBP2 REV__ENSG00000119681|ENST00000261978|LTBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8731079101562 3 392.848856 1175.52474 -0.61944 -0.00024335 1.7239 0.00067725 1.1045 0.00043391 392.84953672757086 26.782 0.27303 26.782 26.699 26.972 0 19 12 2 0 0 0 0.29947 1 13779 13779 3.0723 0 1 954570 + 44272 19200 29271 30009 52240 52240 -0.056003392873890334 PAGFHIHK 8 Unmodified _PAGFHIHK_ 0 0 0 REV__ENST00000542639.5_1_X:43552649-43571203:+|nuORF REV__ENST00000542639.5_1_X:43552649-43571203:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 907.5014038085938 1 906.494447 905.487171 -0.028479 -2.5816E-05 1.1058 0.0010024 1.0773 0.00097658 906.4936047651406 71.014 0.2934 70.537 70.389 70.682 -0.47735 21 12 2 0 0 0 0.80624 1 38925 38925 2.8892 0 1 777720 + 44273 28623 29272 30010 52241 52241 0.030646590283254227 PAGGACHF 8 Unmodified _PAGGACHF_ 0 0 0 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 ENSG00000160951|ENST00000292513|PTGER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.1648559570312 2 380.165773 758.316994 NaN NaN NaN NaN NaN NaN NaN 86.253 1 85.75 85.25 86.25 -0.50318 0 0 0 0.97444 1 47196 47196 0.79363 0 1 44274 6770 29273 30011 52242 52242 -0.07183199965595577 PAGGREKVAF 10 Unmodified _PAGGREKVAF_ 0 0 0 ENST00000550487.5_1_12:50505841-50505931:+|nuORF ENST00000550487.5_1_12:50505841-50505931:+|nuORF ENST00000550487.5_1_12:50505841-50505931:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2831420898438 2 516.285266 1030.55598 NaN NaN NaN NaN NaN NaN NaN 75.475 1 74.998 74.498 75.498 -0.47714 0 0 0 0.79473 1 41317 41317 12.532 2.4576 1 44275 15163 29274 30012 52243 52243 0.04192278537357197 PAGIYHRF 8 Unmodified _PAGIYHRF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7570190429688 2 480.756144 959.497735 NaN NaN NaN NaN NaN NaN NaN 40.36 1 40.365 39.865 40.865 0.0050545 0 0 0 0.37735 1 21520 21520 56.541 30.2 1 44276 9065 29275 30013 52244 52244 0.016366416827622743 PAGKRPGC 8 Unmodified _PAGKRPGC_ 0 0 0 ENST00000607453.1_1_1:245133053-245133287:-|nuORF ENST00000607453.1_1_1:245133053-245133287:-|nuORF ENST00000607453.1_1_1:245133053-245133287:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5573425292969 2 393.207973 784.401392 -0.24066 -9.4631E-05 -1.1481 -0.00045142 -1.3887 -0.00054605 393.20767630765823 35.782 0.34938 35.807 35.663 36.012 0.024971 34 16 3 0 0 0 8.7369 1 18906 18906 0 0 1 4413400 44277 15863 29276 30014 52245 52245 0.0005675085116081391 PAGLNTFCTRL 11 Unmodified _PAGLNTFCTRL_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|76 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|76 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2057495117188 3 398.209619 1191.60703 0.49095 0.0001955 -0.98202 -0.00039105 -0.49107 -0.00019555 398.20895443056025 22.686 0.33647 19.908 19.722 20.058 -2.7784 69 24 4 0 0 0 0.631 1 12153 12153 9.7643 0.52048 1 21655000 + 44278 16782 29277 30015 52246 52246 0.01888859519908692 PAGLTLAIF 9 Unmodified _PAGLTLAIF_ 0 0 0 ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 902.5352172851562 1 902.534581 901.527304 -0.097143 -8.7675E-05 1.0913 0.00098493 0.99415 0.00089726 902.5356770979919 88.735 0.34861 88.23 88.046 88.394 -0.50423 26 14 2 0 0 0 0.2143 1 48571 48571 21.747 3.6117 1 984870 44279 12042 29278 30016 52247 52247 0.07260160908219859 PAGLTLAIF 9 Unmodified _PAGLTLAIF_ 0 0 0 ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.7717895507812 2 451.770929 901.527304 NaN NaN NaN NaN NaN NaN NaN 97.781 1 91.605 91.105 92.105 -6.1757 0 0 0 0.13852 1 64808 64808 38.151 4.0487 1 44280 12042 29278 30016 52248 52248 0.07260160908219859 PAGLTLAIF 9 Unmodified _PAGLTLAIF_ 0 0 0 ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF ENST00000348993.9_1_15:85174877-85175039:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.7719116210938 2 451.770929 901.527304 NaN NaN NaN NaN NaN NaN NaN 97.979 1 91.803 91.303 92.303 -6.1757 0 0 0 0.060495 1 64945 64945 53.576 2.7205 1 44281 12042 29278 30016 52249 52249 0.07260160908219859 PAGMKHLNSL 10 Unmodified _PAGMKHLNSL_ 0 0 0 REV__nc|ENSG00000219186|P0C7X4|FTH1P19 REV__nc|ENSG00000219186|P0C7X4|FTH1P19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.5616760253906 3 356.52706 1066.55935 1.3571 0.00048385 -0.50188 -0.00017893 0.85523 0.00030491 356.5268325900641 22.307 0.20444 19.572 19.471 19.675 -2.7348 17 10 2 0 0 0 0.23922 1 11941 11941 1.9064 0 1 2268600 + 44282 29946 29279 30017 52250 52250 0.028732053197245477 PAGNSGPP 8 Unmodified _PAGNSGPP_ 0 0 0 REV__CON__P04258 REV__CON__P04258 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 696.3289184570312 1 696.33113 695.323853 -0.57227 -0.00039849 -0.35483 -0.00024708 -0.92709 -0.00064557 696.3307630926787 19.33 0.54566 19.33 19.018 19.564 0 64 44 2 0 0 0 0.80975 2 9516 9516;9745 0.79363 0 1 924690 + + 44283 16844 29280 30018 52251;52252 52251 -0.03599563813384066 PAGNSGPP 8 Unmodified _PAGNSGPP_ 0 0 0 REV__CON__P04258 REV__CON__P04258 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 696.33113 695.323853 -0.57227 -0.00039849 -0.35483 -0.00024708 -0.92709 -0.00064557 696.3307630926787 19.33 0.54566 19.33 19.018 19.564 0 -0.18078 -0.00038535 NaN 0.79363 64 44 2 NaN NaN NaN NaN 0 NaN NaN 0 924690 + + 44284 16844 29280 30018 -0.03599563813384066 PAGNSGPP 8 Unmodified _PAGNSGPP_ 0 0 0 REV__CON__P04258 REV__CON__P04258 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 696.33113 695.323853 0.11492 8.0024E-05 0.58711 0.00040883 0.70204 0.00048885 696.3315138364185 22.47 0.38263 19.692 19.445 19.828 -2.7784 0.18078 0.00027055 NaN 0.79363 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2696300 + + 44285 16844 29280 30018 -0.03599563813384066 PAGNSVHAF 9 Unmodified _PAGNSVHAF_ 0 0 0 REV__nc|ENSG00000095002|P43246-2|MSH2 REV__nc|ENSG00000095002|P43246-2|MSH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2225036621094 2 450.222134 898.429715 -0.020434 -9.1999E-06 0.62553 0.00028163 0.6051 0.00027243 450.22241300179417 22.615 0.24843 22.615 22.465 22.714 0 18 11 2 0 0 0 0.28047 1 11485 11485 18.135 2.2878 1 573960 + 44286 17932 29281 30019 52253 52253 -0.023562279679026688 PAGPHRAKKP 10 Unmodified _PAGPHRAKKP_ 0 0 0 REV__nc|ENSG00000146192|Q7Z6J4-5|FGD2 REV__nc|ENSG00000146192|Q7Z6J4-5|FGD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.7714233398438 2 529.814525 1057.6145 1.2833 0.00067993 0.59713 0.00031637 1.8805 0.0009963 529.8146541520554 63.023 0.34166 56.848 56.608 56.949 -6.1757 25 17 2 0 0 0 0.23489 1 40772 40772 4.3292 0 1 13450000 + 44287 29684 29282 30020 52254 52254 0.08799379902484361 PAGRATPPL 9 Unmodified _PAGRATPPL_ 0 0 0 ENST00000560454.1_1_15:78730777-78731116:+|nuORF ENST00000560454.1_1_15:78730777-78731116:+|nuORF ENST00000560454.1_1_15:78730777-78731116:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2574462890625 2 440.255977 878.497401 1.5585 0.00068612 -0.22835 -0.00010053 1.3301 0.00058559 440.25608670167645 33.824 0.32635 29.838 29.676 30.002 -3.9853 31 17 2 0 0 0 0.10734 1 19417 19417 32.305 6.9062 1 8494600 44288 15311 29283 30021 52255 52255 0.05329221962904285 PAGSFGWSAL 10 Unmodified _PAGSFGWSAL_ 0 0 0 REV__ENST00000461211.5_1_20:1423632-1423911:-|nuORF REV__ENST00000461211.5_1_20:1423632-1423911:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.275390625 2 496.745442 991.476331 0.44983 0.00022345 2.5504 0.0012669 3.0003 0.0014904 496.7463858287224 48.538 0.13889 48.494 48.434 48.573 -0.04369 9 6 2 0 0 0 0.22993 1 26202 26202 7.9102 0 1 443810 + 44289 27313 29284 30022 52256 52256 -0.01974788136612915 PAGSKLRL 8 Unmodified _PAGSKLRL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20221201_MKP_PDAC_01 4 421.2672424316406 2 421.266345 840.518136 NaN NaN NaN NaN NaN NaN NaN 28.628 1 25.48 24.98 25.98 -3.1482 0 0 0 0.51139 1 15987 15987 39.957 1.9833 1 44290 4239 29285 30023 52257 52257 0.09149812342559471 PAGSRLAAEL 10 Unmodified _PAGSRLAAEL_ 0 0 0 REV__nc|ENSG00000167741|Q6P531-2|GGT6 REV__nc|ENSG00000167741|Q6P531-2|GGT6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.2300720214844 2 492.777274 983.539994 0.45717 0.00022528 -0.3358 -0.00016547 0.12138 5.9811E-05 492.7774074969831 45.419 0.45955 40.465 40.254 40.713 -4.9549 55 31 3 0 0 0 0.22489 1 28035 28035 13.042 13.042 1 39913000 + 44291 22251 29286 30024 52258 52258 0.04756572300470907 PAGVAHIK 8 Unmodified _PAGVAHIK_ 0 0 0 REV__ENSG00000142409|ENST00000610935|ZNF787 REV__ENSG00000142409|ENST00000610935|ZNF787 MSMS AL20221201_MKP_PDAC_01 4 396.7409057617188 2 396.739963 791.465373 NaN NaN NaN NaN NaN NaN NaN 21.624 1 18.889 18.389 19.389 -2.7348 0 0 0 0.95201 1 11597 11597 10.183 0 1 + 44292 20570 29287 30025 52259 52259 0.061298542797430855 PAGVKRSPFQ 10 Unmodified _PAGVKRSPFQ_ 0 0 0 REV__ENST00000528426.5_1_11:908570-910751:-|nuORF REV__ENST00000528426.5_1_11:908570-910751:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.3056640625 2 543.806365 1085.59818 0.20515 0.00011156 -1.7047 -0.00092701 -1.4995 -0.00081545 543.8056189305261 53.405 0.16507 52.953 52.9 53.065 -0.45173 11 7 2 0 0 0 0.22299 1 28885 28885 19.257 0 1 1663000 + 44293 28410 29288 30026 52260 52260 0.05880253945747427 PAGWCQHL 8 Unmodified _PAGWCQHL_ 0 0 0 REV__ENSG00000149506|ENST00000278853|ZP1 REV__ENSG00000149506|ENST00000278853|ZP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7430114746094 2 456.213255 910.411957 0.57028 0.00026017 -1.394 -0.00063597 -0.82375 -0.0003758 456.21273255392254 37.211 0.21992 37.211 37.018 37.238 0 18 10 2 0 0 0 8.7369 1 19710 19710 22.453 7.8709 1 809840 + 44294 21001 29289 30027 52261 52261 -0.046832664944076896 PAGYFQNIKL 10 Unmodified _PAGYFQNIKL_ 0 0 0 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2112121582031 3 384.213358 1149.61824 1.6217 0.00062307 2.0423 0.00078467 3.6639 0.0014077 384.2140528910414 21.485 0.30622 18.751 18.629 18.935 -2.7348 36 27 2 0 0 0 0.60623 1 11440 11440 6.1918 0 1 2296100 + 44295 21252 29290 30028 52262 52262 0.04942004885697315 PAHCCCPEEAL 11 Unmodified _PAHCCCPEEAL_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-3|ILDR1;ENST00000460554.1_1_3:121712781-121740924:-|nuORF ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.4896240234375 3 391.489288 1171.44604 0.35795 0.00014013 1.0277 0.00040235 1.3857 0.00054248 391.4897165970965 25.024 0.41183 22.141 21.888 22.3 -2.8831 73 39 2 0 0 0 0.72952 1 13648 13648 0.50596 0 1 27376000 44296 5667 29291 30029 52263 52263 -0.13282974179969642 PAHCKIII 8 Unmodified _PAHCKIII_ 0 0 0 nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18 nc|ENSG00000189184|Q9HCL0-2|PCDH18 nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2350158691406 2 447.765123 893.515694 0.70435 0.00031538 0.8677 0.00038853 1.5721 0.00070391 447.7654380038514 79.168 0.38838 79.223 79.056 79.445 0.054977 20 14 2 0 0 0 8.7369 1 43680 43680 0.79363 0 1 3451800 44297 9735 29292 30030 52264 52264 0.06467640613254844 PAHCVVQA 8 Unmodified _PAHCVVQA_ 0 0 0 REV__ENSG00000164535|ENST00000297056|DAGLB REV__ENSG00000164535|ENST00000297056|DAGLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.4126586914062 1 824.408334 823.401058 -0.39158 -0.00032282 2.7 0.0022259 2.3084 0.001903 824.4107080528129 103.51 0.11098 103.46 103.38 103.49 -0.047928 7 4 2 0 0 0 0.80975 1 57475 57475 0.79363 0 1 804520 + 44298 21923 29293 30031 52265 52265 -0.017706688687098904 PAHEHLFY 8 Unmodified _PAHEHLFY_ 0 0 0 REV__ENSG00000184005|ENST00000328299|ST6GALNAC3 REV__ENSG00000184005|ENST00000328299|ST6GALNAC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2467956542969 2 507.245609 1012.47667 0.15275 7.7479E-05 1.8435 0.00093513 1.9963 0.0010126 507.2462879628135 85.464 0.5451 84.962 84.753 85.298 -0.5015 70 45 2 0 0 0 0.77907 1 46811 46811 10.183 3.8293 1 4147900 + 44299 23391 29294 30032 52266 52266 -0.029073684167542524 PAHFFFVSFGF 11 Unmodified _PAHFFFVSFGF_ 0 0 0 ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826293945312 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 39.664 1 39.664 39.164 40.164 0 0 0 0 0.94144 1 21271 21271 0.50596 0 1 44300 15326 29295 30033 52267 52267 -0.015416912516911907 PAHFFFVSFGF 11 Unmodified _PAHFFFVSFGF_ 0 0 0 ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827209472656 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 64.128 1 64.128 63.628 64.628 0 0 0 0 0.9385 1 35762 35762 1.4551 0 1 44301 15326 29295 30033 52268 52268 -0.015416912516911907 PAHFFFVSFGF 11 Unmodified _PAHFFFVSFGF_ 0 0 0 ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF ENST00000561482.5_1_16:29802188-29802479:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822937011719 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 64.691 1 64.206 63.706 64.706 -0.48512 0 0 0 0.9385 1 35297 35297 1.4551 0 1 44302 15326 29295 30033 52269 52269 -0.015416912516911907 PAHLQKPTLA 10 Unmodified _PAHLQKPTLA_ 0 0 0 ENST00000469112.5_2_1:171244541-171251486:+|nuORF;nc|ENSG00000010932|Q01740-2|FMO1;ENSG00000010932|ENST00000617670|FMO1 ENST00000469112.5_2_1:171244541-171251486:+|nuORF ENST00000469112.5_2_1:171244541-171251486:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2134094238281 3 359.213469 1074.61858 1.2958 0.00046549 0.23727 8.523E-05 1.5331 0.00055072 359.21361557143723 35.315 0.27714 31.219 31.09 31.367 -4.0951 35 16 3 0 0 0 0.62068 1 20451 20451 8.9762 0 1 12608000 44303 429 29296 30034 52270 52270 0.08425424605570697 PAHLYTHPI 9 Unmodified _PAHLYTHPI_ 0 0 0 REV__ENSG00000153093|ENST00000439055|ACOXL REV__ENSG00000153093|ENST00000439055|ACOXL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1918334960938 3 350.190665 1047.55016 NaN NaN NaN NaN NaN NaN NaN 20.362 1 20.362 19.862 20.862 0 0 0 0 0.82015 1 10240 10240 2.9952 0 1 + 44304 21150 29297 30035 52271 52271 0.028291800257193245 PAHPRDTSTL 10 Unmodified _PAHPRDTSTL_ 0 0 0 ENST00000494995.5_1_1:155580896-155583988:+|nuORF ENST00000494995.5_1_1:155580896-155583988:+|nuORF ENST00000494995.5_1_1:155580896-155583988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7847900390625 2 547.783087 1093.55162 NaN NaN NaN NaN NaN NaN NaN 23.578 1 23.578 23.078 24.078 0 0 0 0 0.92825 1 12022 12022 6.7232 0 1 44305 14344 29298 30036 52272 52272 0.008587693238041538 PAHVVYLLL 9 Unmodified _PAHVVYLLL_ 0 0 0 REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF REV__ENST00000372718.7_1_1:40887792-40887975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.3167114257812 2 512.813128 1023.6117 0.60063 0.00030801 0.15171 7.7797E-05 0.75233 0.00038581 512.8131699166393 74.431 0.54054 73.956 73.741 74.281 -0.47588 40 22 2 0 0 0 0.22317 1 40685 40685 20.871 0 1 4947400 + 44306 26123 29299 30037 52273 52273 0.10084111724984268 PAIAMLAQSRD 11 Unmodified _PAIAMLAQSRD_ 0 0 0 REV__ENSG00000278803|ENST00000458091|PWWP4 REV__ENSG00000278803|ENST00000458091|PWWP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3187255859375 2 586.808248 1171.60194 2.0101 0.0011796 3.3667 0.0019756 5.3768 0.0031552 587.8147325565099 81.869 0.46722 81.929 81.61 82.078 0.059929 60 18 6 0 0 0 0.42031 1 45252 45252 20.454 7.4112 1 9881400 + 44307 24675 29300 30038 52274 52274 0.023005556573025387 PAIDYHISL 9 Unmodified _PAIDYHISL_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;ENST00000480103.5_1_2:43958687-43967966:+|nuORF ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.771484375 2 514.7742 1027.53385 NaN NaN NaN NaN NaN NaN NaN 35.416 1 35.416 34.916 35.916 0 0 0 0 0.33856 1 18723 18723 23.148 0.41214 1 44308 6195 29301 30039 52275 52275 0.021180540689329064 PAIERLLPDFE 11 Unmodified _PAIERLLPDFE_ 0 0 0 REV__ENST00000560342.5_1_14:24616937-24618114:+|nuORF REV__ENST00000560342.5_1_14:24616937-24618114:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.9037780761719 3 433.902961 1298.68705 0.86403 0.0003749 0.64812 0.00028122 1.5121 0.00065612 433.9033404163224 58.272 0.23618 58.211 58.097 58.333 -0.060722 20 11 2 0 0 0 0.47137 1 31721 31721 17.863 6.9642 1 4101800 + 44309 17903 29302 30040 52276 52276 0.049656243947538314 PAILLMFL 8 Unmodified _PAILLMFL_ 0 0 0 ENSG00000149488|ENST00000358864|TMC2 ENSG00000149488|ENST00000358864|TMC2 ENSG00000149488|ENST00000358864|TMC2 MSMS AL20221201_MKP_PDAC_01 4 459.2801513671875 2 459.280075 916.545597 NaN NaN NaN NaN NaN NaN NaN 70.102 1 63.926 63.426 64.426 -6.1757 0 0 0 0.9706 1 45794 45794 6.3541 0 1 44310 6012 29303 30041 52277 52277 0.08398579558581787 PAILVSEFL 9 Unmodified _PAILVSEFL_ 0 0 0 nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2982788085938 2 494.789318 987.564084 2.2178 0.0010973 -0.11823 -5.8497E-05 2.0995 0.0010388 494.78959543277347 94.633 0.23037 94.647 94.516 94.746 0.014244 13 8 2 0 0 0 0.203 1 52548 52548 9.3474 0 1 1237400 44311 1598 29304 30042 52278 52278 0.06980412734139918 PAIPKLTK 8 Unmodified _PAIPKLTK_ 0 0 0 REV__PRDM2-BMP8B|1|fusion;REV__nc|ENSG00000116731|Q13029-2|PRDM2 REV__PRDM2-BMP8B|1|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8427734375 2 434.286746 866.558939 0.54162 0.00023522 -0.78436 -0.00034064 -0.24274 -0.00010542 434.28611768425276 47.881 0.26476 47.881 47.767 48.032 0 28 12 3 0 0 0 8.7369 1 26262 26262 15.847 3.3156 1 4724900 + 44312 30080;19063 29305 30043 52279 52279 0.12032153662164546 PAIQTTST 8 Unmodified _PAIQTTST_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF;ENST00000478980.1_1_2:27256012-27257182:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MSMS AL20221201_MKP_PDAC_01 4 409.7162475585938 2 409.71635 817.418148 NaN NaN NaN NaN NaN NaN NaN 24.341 1 21.514 21.014 22.014 -2.8273 0 0 0 0.97348 1 13246 13246 5.7604 1.0044 1 44313 3468 29306 30044 52280 52280 0.002135302180818144 PAIRQCFY 8 Unmodified _PAIRQCFY_ 0 0 0 ENST00000577700.5_1_7:45023479-45023584:-|nuORF ENST00000577700.5_1_7:45023479-45023584:-|nuORF ENST00000577700.5_1_7:45023479-45023584:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2518920898438 2 499.249837 996.485122 0.58938 0.00029425 3.0532 0.0015243 3.6426 0.0018186 499.2515647489942 54.857 0.27103 54.857 54.715 54.986 0 17 11 2 0 0 0 0.50586 1 30461 30461 34.187 3.5508 1 3400600 44314 15534 29307 30045 52281 52281 -0.013261377717981304 PAISHAAFTY 10 Unmodified _PAISHAAFTY_ 0 0 0 nc|ENSG00000166831|Q6ZRY4-2|RBPMS2;ENSG00000166831|ENST00000300069|RBPMS2 nc|ENSG00000166831|Q6ZRY4-2|RBPMS2 nc|ENSG00000166831|Q6ZRY4-2|RBPMS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2710571289062 2 539.271824 1076.5291 NaN NaN NaN NaN NaN NaN NaN 37.552 1 37.552 37.052 38.052 0 0 0 0 0.81521 1 19991 19991 11.64 3.7301 1 44315 7537 29308 30046 52282 52282 -0.006108300738105754 PAIVFMYR 8 Unmodified _PAIVFMYR_ 0 0 0 ENSG00000173517|ENST00000682557|PEAK1;ENST00000559791.1_1_15:77470364-77471415:-|nuORF ENSG00000173517|ENST00000682557|PEAK1 ENSG00000173517|ENST00000682557|PEAK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7702331542969 2 498.770406 995.526258 NaN NaN NaN NaN NaN NaN NaN 77.987 1 77.987 77.487 78.487 0 0 0 0 0.95607 1 43349 43349 9.3474 1.4373 1 44316 8332 29309 30047 52283 52283 0.028316232676843356 PAKDIQTNVYI 11 Unmodified _PAKDIQTNVYI_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.343017578125 2 631.342978 1260.6714 -0.34825 -0.00021986 0.74855 0.00047259 0.4003 0.00025273 631.3434359190154 37.659 0.37402 37.388 37.206 37.58 -0.27133 49 16 4 0 0 0 0.051143 1 19845 19845 46.022 0 1 45727000 44317 1696 29310 30048 52284 52284 0.0514933787769678 PAKFDYKL 8 Unmodified _PAKFDYKL_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;ENST00000452556.5_1_2:214162070-215102915:+|nuORF;nc|ENSG00000144451|Q8N0X2-2|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2543029785156 2 491.273835 980.533118 1.0505 0.00051606 -0.28114 -0.00013812 0.76931 0.00037794 491.2735457884796 54.414 0.34296 48.549 48.339 48.682 -5.8653 32 21 2 0 0 0 8.7369 1 34614 34614 5.7604 5.7604 1 13955000 44318 5610 29311 30049 52285 52285 0.04207259419899856 PAKFEFIVR 9 Unmodified _PAKFEFIVR_ 0 0 0 nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1;ENST00000564020.1_1_16:48530917-48531397:+|nuORF;nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1 nc|ENSG00000124615|Q9NZB8-7|MOCS1 nc|ENSG00000124615|Q9NZB8-7|MOCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5503845214844 3 369.550082 1105.62842 -0.37371 -0.0001381 0.20145 7.4446E-05 -0.17226 -6.3659E-05 369.55009402815074 53.596 0.94033 53.532 53.402 54.342 -0.063419 139 53 4 0 0 0 0.41742 3 29033 29033;29139;29364 7.609 0 1 556720000 44319 3807 29312 30050 52286;52287;52288 52286 0.07982612610953765 PAKGGISV 8 Unmodified _PAKGGISV_ 0 0 0 ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENST00000474906.2_1_6:76388527-76407234:+|nuORF ENSG00000112701|ENST00000447266|SENP6 ENSG00000112701|ENST00000447266|SENP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.7200317382812 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 36.546 1 36.297 35.797 36.797 -0.2497 0 0 0 0.97444 1 19179 19179 2.5775 0 1 44320 2912 29313 30051 52289 52289 0.04822459151523617 PAKILVEF 8 Unmodified _PAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7789306640625 2 458.778754 915.542954 0.57243 0.00026262 -0.16145 -7.4068E-05 0.41099 0.00018855 458.77868428344 73.679 0.28079 73.203 73.018 73.299 -0.47588 18 11 2 0 0 0 0.48583 1 40318 40318 36.127 5.4905 1 1507700 44321 3669 29314 30052 52290 52290 0.08180447425274906 PAKILVEF 8 Unmodified _PAKILVEF_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT;nc|ENSG00000122952|O95229-2|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2798156738281 2 458.778754 915.542954 0.34906 0.00016014 -1.0046 -0.00046088 -0.65553 -0.00030074 458.7783031089572 72.944 0.5901 72.985 72.7 73.29 0.041733 42 28 2 0 0 0 0.38465 2 40224 40224;40338 46.021 13.715 1 8414600 44322 3669 29314 30052 52291;52292 52291 0.08180447425274906 PAKKGGHLTLF 11 Unmodified _PAKKGGHLTLF_ 0 0 0 REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant REV__FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8820495605469 3 390.232752 1167.67643 0.1814 7.0788E-05 -1.6675 -0.00065072 -1.4861 -0.00057993 390.2316173722635 49.093 0.14337 49.049 48.927 49.07 -0.04369 9 6 2 0 0 0 0.30403 1 26478 26478 1.2148 0 1 648000 + 44323 24495 29315 30053 52293 52293 0.09929686530972504 PAKLHNSL 8 Unmodified _PAKLHNSL_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MSMS AL20221201_MKP_PDAC_01 4 440.2559509277344 2 440.255977 878.497401 NaN NaN NaN NaN NaN NaN NaN 29.445 1 26.144 25.644 26.644 -3.3016 0 0 0 6.794900000000001E-30 1 16541 16541 188.58 95.755 1 44324 3152 29316 30054 52294 52294 0.053292219628815474 PAKRAPEL 8 Unmodified _PAKRAPEL_ 0 0 0 REV__ENST00000575627.5_1_16:30064532-30064793:+|nuORF REV__ENST00000575627.5_1_16:30064532-30064793:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2034301757812 2 441.263802 880.513051 -0.10018 -4.4206E-05 -0.031426 -1.3867E-05 -0.13161 -5.8073E-05 441.2638817786373 23.329 0.24466 23.329 23.182 23.427 0 17 11 2 0 0 0 8.7369 1 11928 11928 4.756 0 1 607820 + 44325 29018 29317 30055 52295 52295 0.06801508479941276 PAKVTAHW 8 Unmodified _PAKVTAHW_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2506103515625 2 455.250695 908.486836 0.59558 0.00027114 -0.0070215 -3.1965E-06 0.58856 0.00026794 455.25061864558063 45.033 0.41658 40.181 39.893 40.31 -4.852 41 27 2 0 0 0 0.078813 1 27513 27513 111.29 69.192 1 10149000 44326 8944 29318 30056 52296 52296 0.02893239308457396 PALACILF 8 Unmodified _PALACILF_ 0 0 0 ENST00000495994.5_1_1:64971604-64972057:+|nuORF ENST00000495994.5_1_1:64971604-64972057:+|nuORF ENST00000495994.5_1_1:64971604-64972057:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.7711791992188 2 424.24095 846.467346 1.8076 0.00076688 -1.5792 -0.00066997 0.22842 9.6904E-05 424.2400330602459 108.85 0.32947 102.68 102.48 102.81 -6.1757 73 51 2 0 0 0 8.7369 1 72696 72696 2.8892 0 1 2709800 44327 14363 29319 30057 52297 52297 0.03797146973352028 PALAPELFL 9 Unmodified _PALAPELFL_ 0 0 0 REV__ENST00000361221.7_1_1:17981159-17982543:+|nuORF REV__ENST00000361221.7_1_1:17981159-17982543:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2813110351562 2 485.784036 969.553519 0.51621 0.00025077 -1.2107 -0.00058812 -0.69445 -0.00033736 485.7868156748645 53.385 0.56537 53.385 53.099 53.665 0 59 25 4 0 0 0 0.39863 1 29629 29629 12.532 1.4171 1 12786000 + 44328 25917 29320 30058 52298 52298 0.06752430079700389 PALAPVSPL 9 Unmodified _PALAPVSPL_ 0 0 0 REV__ENST00000439101.5_1_2:242440235-242447431:-|nuORF REV__ENST00000439101.5_1_2:242440235-242447431:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7634887695312 2 432.763104 863.511654 1.2602 0.00054535 0.2836 0.00012273 1.5438 0.00066808 432.7630656824392 71.605 0.36734 65.429 65.206 65.573 -6.1757 28 18 2 0 0 0 0.027803 1 46884 46884 56.541 2.9657 1 34146000 + 44329 27059 29321 30059 52299 52299 0.07443874391185545 PALASVLLAL 10 Unmodified _PALASVLLAL_ 0 0 0 ENSG00000196415|ENST00000234347|PRTN3 ENSG00000196415|ENST00000234347|PRTN3 ENSG00000196415|ENST00000234347|PRTN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.3132934570312 2 484.312961 966.611368 0.85612 0.00041463 -0.52259 -0.0002531 0.33353 0.00016153 484.312588991407 99.207 0.31976 93.032 92.824 93.144 -6.1757 43 18 3 0 0 0 0.063761 1 65913 65913 54.774 3.9185 1 65336000 44330 9814 29322 30060 52300 52300 0.12672692005139652 PALDRSWGLEF 11 Unmodified _PALDRSWGLEF_ 0 0 0 ENST00000571658.2_2_17:45009367-45009658:+|nuORF ENST00000571658.2_2_17:45009367-45009658:+|nuORF ENST00000571658.2_2_17:45009367-45009658:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8878479003906 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 61.747 1 61.714 61.214 62.214 -0.032787 0 0 0 0.94144 1 33705 33705 0.50596 0 1 44331 15489 29323 30061 52301 52301 0.007201845634881465 PALFEPTGF 9 Unmodified _PALFEPTGF_ 0 0 0 REV__ENSG00000140795|ENST00000394809|MYLK3 REV__ENSG00000140795|ENST00000394809|MYLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.75 2 489.750193 977.485833 0.89958 0.00044057 -1.4147 -0.00069286 -0.51514 -0.00025229 489.74945393162517 75.397 0.34502 74.92 74.781 75.126 -0.47714 31 19 2 0 0 0 0.03327 1 41262 41262 53.576 21.459 1 1762600 + 44332 20493 29324 30062 52302 52302 -0.0038101985109051384 PALFEPTGF 9 Unmodified _PALFEPTGF_ 0 0 0 REV__ENSG00000140795|ENST00000394809|MYLK3 REV__ENSG00000140795|ENST00000394809|MYLK3 MSMS AL20221201_MKP_PDAC_01 4 489.7499084472656 2 489.750193 977.485833 NaN NaN NaN NaN NaN NaN NaN 93.054 1 86.878 86.378 87.378 -6.1757 0 0 0 0.060495 1 61565 61565 53.576 13.618 1 + 44333 20493 29324 30062 52303 52303 -0.0038101985109051384 PALFSTYE 8 Unmodified _PALFSTYE_ 0 0 0 REV__nc|ENSG00000100462|O14744-4|PRMT5 REV__nc|ENSG00000100462|O14744-4|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.4553833007812 1 927.445825 926.438549 0.57016 0.00052879 0.35302 0.0003274 0.92317 0.00085619 927.4456538551185 53.15 0.5595 53.15 52.88 53.439 0 66 25 4 0 0 0 0.80624 1 29433 29433 2.8892 0 1 17615000 + 44334 18071 29325 30063 52304 52304 -0.027612991220848926 PALGKAVS 8 Unmodified _PALGKAVS_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.7279357910156 2 371.726521 741.438489 NaN NaN NaN NaN NaN NaN NaN 42.95 1 42.935 42.435 43.435 -0.015667 0 0 0 0.97444 1 23009 23009 2.5775 1.7838 1 44335 9905 29326 30064 52305 52305 0.05742745668567295 PALHRCTV 8 Unmodified _PALHRCTV_ 0 0 0 REV__ENST00000427574.6_1_11:76156052-76156124:+|nuORF REV__ENST00000427574.6_1_11:76156052-76156124:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.4878540039062 1 896.477083 895.469806 0.60375 0.00054125 1.194 0.0010704 1.7978 0.0016117 896.4789818935895 57.375 0.66104 51.347 50.891 51.552 -6.0275 49 37 2 0 0 0 0.57045 1 36575 36575 28.487 6.7402 1 35533000 + 44336 26926 29327 30065 52306 52306 0.017889954310021494 PALIFEKGL 9 Unmodified _PALIFEKGL_ 0 0 0 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 REV__nc|ENSG00000157445|Q8IZS8-2|CACNA2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2982788085938 2 494.29731 986.580068 2.197 0.0010859 0.38233 0.00018898 2.5793 0.0012749 494.2975648305828 94.426 0.35284 94.44 94.266 94.618 0.014244 29 12 3 0 0 0 0.46577 1 52548 52548 9.3474 1.4373 1 3446800 + 44337 21383 29328 30066 52307 52307 0.08624118971033568 PALLFLLL 8 Unmodified _PALLFLLL_ 0 0 0 ENST00000300952.6_1_19:1257449-1257602:+|nuORF ENST00000300952.6_1_19:1257449-1257602:+|nuORF ENST00000300952.6_1_19:1257449-1257602:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.3017272949219 2 450.301865 898.589176 1.192 0.00053678 0.93537 0.0004212 2.1274 0.00095797 450.3021511304152 102.39 0.068779 96.209 96.181 96.249 -6.1757 9 5 2 0 0 0 0.42709 1 68717 68717 41.817 0 1 5542600 44338 11559 29329 30067 52308 52308 0.13582512327377572 PALLLCRDF 9 Unmodified _PALLLCRDF_ 0 0 0 ENST00000585034.5_1_17:16120746-16220082:+|nuORF ENST00000585034.5_1_17:16120746-16220082:+|nuORF ENST00000585034.5_1_17:16120746-16220082:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7850341796875 2 524.28642 1046.55829 0.10408 5.4566E-05 -2.9771 -0.0015609 -2.873 -0.0015063 524.7862252820328 22.575 0.25723 22.593 22.37 22.627 0.01749 18 12 2 0 0 0 0.53666 1 11514 11514 5.2307 1.2863 1 4766400 44339 15601 29330 30068 52309 52309 0.03686990950814106 PALLLQLYAN 10 Unmodified _PALLLQLYAN_ 0 0 0 REV__ENSG00000071189|ENST00000428135|SNX13 REV__ENSG00000071189|ENST00000428135|SNX13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7847900390625 2 558.326599 1114.63865 0.82102 0.0004584 0.3274 0.0001828 1.1484 0.00064119 558.3267213584285 90.309 0.30592 90.351 90.188 90.494 0.042175 23 10 3 0 0 0 0.22993 1 50280 50280 12.532 4.6214 1 10029000 + 44340 17491 29331 30069 52310 52310 0.08591175545507213 PALLRSHV 8 Unmodified _PALLRSHV_ 0 0 0 ENST00000562727.1_3_16:68299566-68300600:+|nuORF ENST00000562727.1_3_16:68299566-68300600:+|nuORF ENST00000562727.1_3_16:68299566-68300600:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.7722473144531 2 446.771794 891.529036 0.75969 0.00033941 -0.14691 -6.5637E-05 0.61278 0.00027377 446.77187142395246 30.081 0.3074 26.584 26.41 26.718 -3.497 19 14 2 0 0 0 0.48669 1 16981 16981 36.044 0 1 17565000 44341 15345 29332 30070 52311 52311 0.07893214716841612 PALNTNRLY 9 Unmodified _PALNTNRLY_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2908325195312 2 531.290548 1060.56654 0.85489 0.00045419 -0.094741 -5.0335E-05 0.76014 0.00040386 531.2902769602549 40.636 0.35197 36.106 35.971 36.323 -4.5294 25 21 2 0 0 0 0.39863 1 24336 24336 12.532 0 1 6791100 + 44342 20072 29333 30071 52312 52312 0.03868261191814781 PALPAPVE 8 Unmodified _PALPAPVE_ 0 0 0 REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF REV__ENST00000370220.1_1_10:102759899-102760451:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.2266845703125 2 397.226354 792.438155 NaN NaN NaN NaN NaN NaN NaN 84.321 1 78.145 77.645 78.645 -6.1757 0 0 0 0.81841 1 55469 55469 22.453 5.3661 1 + 44343 26055 29334 30072 52313 52313 0.033633259487032774 PALPGVPGRIP 11 Unmodified _PALPGVPGRIP_ 0 0 0 ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF ENST00000478372.1_1_21:43373107-43373571:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2037353515625 3 358.553715 1072.63931 -0.0094803 -3.3992E-06 0.041075 1.4728E-05 0.031595 1.1328E-05 358.5537523167 33.621 0.27524 33.65 33.562 33.837 0.028934 17 11 2 0 0 0 0.30452 1 17706 17706 0.08335 0.08335 1 1124000 44344 14014 29335 30073 52314 52314 0.10590014985223206 PALPHLHAL 9 Unmodified _PALPHLHAL_ 0 0 0 ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7887878417969 2 484.787444 967.560336 1.2443 0.00060324 1.4291 0.00069283 2.6735 0.0012961 484.7880322789817 40.844 0.38171 36.315 36.113 36.494 -4.5294 56 23 3 0 0 0 0.3554 1 24358 24358 14.582 1.0738 1 30787000 44345 15229 29336 30074 52315 52315 0.07525787750932977 PALPHLHAL 9 Unmodified _PALPHLHAL_ 0 0 0 ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 484.787444 967.560336 0.79307 0.00038447 0.67505 0.00032726 1.4681 0.00071173 484.7878619495206 36.557 0.23895 36.557 36.409 36.648 0 0.080425 -0.00039081 NaN 14.582 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9890200 44346 15229 29336 30074 0.07525787750932977 PALPHLHAL 9 Unmodified _PALPHLHAL_ 0 0 0 ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF ENST00000555638.5_1_14:67940311-67953837:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 484.787444 967.560336 -0.084134 -4.0787E-05 1.1553 0.00056008 1.0712 0.00051929 484.7880320558777 36.536 0.35493 36.558 36.372 36.727 0.021545 0.08127 7.484E-05 NaN 14.582 46 16 4 NaN NaN NaN NaN 0 NaN NaN 0 33093000 44347 15229 29336 30074 0.07525787750932977 PALPPPLAED 10 Unmodified _PALPPPLAED_ 0 0 0 REV__ENSG00000188779|ENST00000380035|SKOR1 REV__ENSG00000188779|ENST00000380035|SKOR1 MSMS AL20221201_MKP_PDAC_01 4 510.2763977050781 2 510.274032 1018.53351 NaN NaN NaN NaN NaN NaN NaN 27.065 1 24.029 23.529 24.529 -3.0365 0 0 0 0.85122 1 14969 14969 10.074 1.4806 1 + 44348 23728 29337 30075 52316 52316 0.02498634349092299 PALQRWLTVVL 11 Unmodified _PALQRWLTVVL_ 0 0 0 REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5999145507812 3 432.599324 1294.77614 -0.032708 -1.415E-05 -0.065489 -2.8331E-05 -0.098198 -4.248E-05 432.59919336960803 51.341 0.51309 51.287 50.986 51.499 -0.053871 65 25 3 0 0 0 0.70701 1 27712 27712 3.0723 1.6171 1 7201400 44349 19858 29338 30076 52317 52317 0.14054504144905877 PALRARSF 8 Unmodified _PALRARSF_ 0 0 0 ENSG00000156222|ENST00000394573|SLC28A1;nc|ENSG00000156222|O00337-2|SLC28A1 ENSG00000156222|ENST00000394573|SLC28A1 ENSG00000156222|ENST00000394573|SLC28A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2702941894531 2 459.269419 916.524284 NaN NaN NaN NaN NaN NaN NaN 34.773 1 34.8 34.3 35.3 0.027401 0 0 0 0.97444 1 18349 18349 2.8892 0 1 44350 6440 29339 30077 52318 52318 0.06268330574084757 PALRGAIVY 9 Unmodified _PALRGAIVY_ 0 0 0 REV__ENSG00000177191|ENST00000691102|B3GNT8 REV__ENSG00000177191|ENST00000691102|B3GNT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2815856933594 2 480.287277 958.560001 1.1394 0.00054722 -3.5006 -0.0016813 -2.3613 -0.0011341 480.28537969400304 86.138 0.84116 79.962 79.424 80.266 -6.1757 86 46 2 0 0 0 0.078417 1 56455 56455 38.151 7.9264 1 27942000 + 44351 22969 29340 30078 52319 52319 0.07906368031081001 PALRGALL 8 Unmodified _PALRGALL_ 0 0 0 ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF ENST00000262738.7_1_22:46932303-46932903:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.76416015625 2 405.763438 809.512323 1.1259 0.00045685 0.036131 1.4661E-05 1.162 0.00047151 405.7634152851428 50.285 0.56694 50.236 50.046 50.613 -0.048824 69 27 4 0 0 0 0.1036 2 27143 27143;27239 98.807 7.9714 1 19472000 44352 11274 29341 30079 52320;52321 52320 0.09994713830894852 PALRRNLLL 9 Unmodified _PALRRNLLL_ 0 0 0 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7853393554688 2 533.3482 1064.68185 0.20284 0.00010819 0.16044 8.5569E-05 0.36328 0.00019376 533.348169526648 55.135 0.23813 55.066 54.98 55.218 -0.068737 22 11 2 0 0 0 0.12572 1 29950 29950 32.117 0 1 3625000 44353 10511 29342 30080 52322 52322 0.15209410113470767 PALSAQSYF 9 Unmodified _PALSAQSYF_ 0 0 0 REV__ENST00000397261.7_1_3:9848255-9848414:+|nuORF REV__ENST00000397261.7_1_3:9848255-9848414:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2444763183594 2 492.245275 982.475997 0.14077 6.9296E-05 -2.9497 -0.001452 -2.8089 -0.0013827 492.24366027421536 56.753 0.26792 56.753 56.518 56.786 0 14 11 2 0 0 0 0.49272 1 31518 31518 7.9102 1.187 1 1676500 + 44354 26532 29343 30081 52323 52323 -0.015942078564762596 PALSFTLLK 9 Unmodified _PALSFTLLK_ 0 0 0 REV__ENSG00000181378|ENST00000341552|CFAP65 REV__ENSG00000181378|ENST00000341552|CFAP65 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7663879394531 2 495.305136 988.595718 0.14228 7.0473E-05 0.49917 0.00024724 0.64145 0.00031772 495.30569929425417 51.604 0.17725 51.546 51.474 51.651 -0.058918 14 8 2 0 0 0 0.21798 1 27952 27952 2.3027 0 1 954540 + 44355 23200 29344 30082 52324 52324 0.10096405488104665 PALSKCVNIL 10 Unmodified _PALSKCVNIL_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7667236328125 2 529.307352 1056.60015 0.83634 0.00044268 -0.36195 -0.00019158 0.47439 0.0002511 529.3072984762842 102.09 0.085709 95.912 95.854 95.939 -6.1757 5 3 2 0 0 0 0.22507 1 68509 68509 16.942 0 1 3325300 + 44356 23892 29345 30083 52325 52325 0.07411546639355038 PALSYSYPQV 10 Unmodified _PALSYSYPQV_ 0 0 0 ENSG00000130675|ENST00000252971|MNX1 ENSG00000130675|ENST00000252971|MNX1 ENSG00000130675|ENST00000252971|MNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2864379882812 2 562.784764 1123.55498 0.85364 0.00048041 0.24693 0.00013897 1.1006 0.00061938 562.7850085570304 62.41 0.47527 61.923 61.768 62.243 -0.48764 52 22 3 0 0 0 0.54684 1 34084 34084 13.906 0.39817 1 9101300 44357 4234 29346 30084 52326 52326 -0.0018598062220007705 PALTEAEMPL 10 Unmodified _PALTEAEMPL_ 0 0 0 REV__ENSG00000018408|ENST00000360632|WWTR1 REV__ENSG00000018408|ENST00000360632|WWTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2731323242188 2 536.273175 1070.5318 0.089686 4.8096E-05 -3.2022 -0.0017173 -3.1126 -0.0016692 536.271622032954 71.858 0.22698 71.858 71.717 71.944 0 19 10 2 0 0 0 0.50944 1 40001 40001 15.847 3.3156 1 1392300 + 44358 17095 29347 30085 52327 52327 -0.0006474273116054974 PALTEAEMPL 10 Unmodified _PALTEAEMPL_ 0 0 0 REV__ENSG00000018408|ENST00000360632|WWTR1 REV__ENSG00000018408|ENST00000360632|WWTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2720947265625 2 536.273175 1070.5318 0.51847 0.00027804 -2.5784 -0.0013827 -2.0599 -0.0011047 536.2715196963251 72.347 0.31125 71.871 71.709 72.02 -0.47609 26 14 3 0 0 0 0.50944 1 39617 39617 15.847 1.0089 1 1929200 + 44359 17095 29347 30085 52328 52328 -0.0006474273116054974 PALTEAEMPL 10 Unmodified _PALTEAEMPL_ 0 0 0 REV__ENSG00000018408|ENST00000360632|WWTR1 REV__ENSG00000018408|ENST00000360632|WWTR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.273175 1070.5318 0.089686 4.8096E-05 -3.2022 -0.0017173 -3.1126 -0.0016692 536.271622032954 71.858 0.22698 71.858 71.717 71.944 0 -0.006173 -0.00043702 NaN 15.847 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1392300 + 44360 17095 29347 30085 -0.0006474273116054974 PALTEAEMPL 10 Unmodified _PALTEAEMPL_ 0 0 0 REV__ENSG00000018408|ENST00000360632|WWTR1 REV__ENSG00000018408|ENST00000360632|WWTR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.273175 1070.5318 0.51847 0.00027804 -2.5784 -0.0013827 -2.0599 -0.0011047 536.2715196963251 72.347 0.31125 71.871 71.709 72.02 -0.47609 0.006173 0.0002321 NaN 15.847 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1929200 + 44361 17095 29347 30085 -0.0006474273116054974 PALVTHLS 8 Unmodified _PALVTHLS_ 0 0 0 nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.4822387695312 1 837.482879 836.475603 -0.16435 -0.00013764 0.045055 3.7733E-05 -0.1193 -9.9908E-05 837.4829226791165 59.665 0.24458 59.175 59.048 59.293 -0.49079 21 11 2 0 0 0 0.41521 1 32424 32424 42.968 8.7807 1 2329200 44362 6094;16271 29348 30086 52329 52329 0.0508241721433933 PALVWKLV 8 Unmodified _PALVWKLV_ 0 0 0 REV__ENST00000594681.5_1_19:53757854-53757914:-|nuORF REV__ENST00000594681.5_1_19:53757854-53757914:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 463.3001403808594 2 463.297114 924.579674 NaN NaN NaN NaN NaN NaN NaN 59.972 1 53.857 53.357 54.357 -6.1147 0 0 0 0.9249 1 38558 38558 15.768 5.5848 1 + 44363 29203 29349 30087 52330 52330 0.11436744041850488 PALWFHHVQ 9 Unmodified _PALWFHHVQ_ 0 0 0 ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 ENSG00000243789|ENST00000397299|JMJD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1989440917969 3 378.866293 1133.57705 NaN NaN NaN NaN NaN NaN NaN 18.583 1 18.606 18.106 19.106 0.023106 0 0 0 0.85737 1 9327 9327 0.26902 0 1 44364 10716 29350 30088 52331 52331 0.015602886368924374 PALYAEPLD 9 Unmodified _PALYAEPLD_ 0 0 0 nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 nc|ENSG00000115325|Q99704-3|DOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.508056640625 1 988.498589 987.491313 0.35156 0.00034752 0.85273 0.00084292 1.2043 0.0011904 988.499430595691 73.909 0.68013 73.909 73.591 74.271 0 76 30 3 0 0 0 0.49272 1 41059 41059 7.9102 2.6795 1 4429100 44365 3111 29351 30089 52332 52332 -0.0029334105929592624 PALYNTIPF 9 Unmodified _PALYNTIPF_ 0 0 0 REV__ENSG00000112658|ENST00000265354|SRF REV__ENSG00000112658|ENST00000265354|SRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2786865234375 2 518.279118 1034.54368 0.28665 0.00014856 0.065742 3.4073E-05 0.35239 0.00018264 518.278956965453 97.141 0.41896 96.898 96.727 97.146 -0.24277 31 18 2 0 0 0 0.53666 1 53026 53026 5.2307 0 1 430630 + 44366 18827 29352 30090 52333 52333 0.027792420743026014 PAMVMAVHSQ 10 Unmodified _PAMVMAVHSQ_ 0 0 0 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8429870605469 3 357.5089 1069.50487 0.84756 0.00030301 0.92429 0.00033044 1.7718 0.00063345 357.5093539962169 14.864 0.22402 12.336 12.269 12.493 -2.5273 59 40 2 0 0 0 0.68719 1 7639 7639 2.086 0 1 3053500 44367 9554 29353 30091 52334 52334 -0.02710129823344687 PANDVPVI 8 Unmodified _PANDVPVI_ 0 0 0 ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7297668457031 2 412.729261 823.443968 0.49578 0.00020462 -0.14526 -5.9952E-05 0.35052 0.00014467 412.7291476460926 86.286 0.42474 85.782 85.595 86.02 -0.50318 30 17 2 0 0 0 0.63229 1 47172 47172 23.148 6.2061 1 880390 44368 15827 29354 30092 52335 52335 0.025184244603906336 PANDVPVI 8 Unmodified _PANDVPVI_ 0 0 0 ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.4527587890625 1 824.451245 823.443968 1.0391 0.00085666 0.13648 0.00011252 1.1755 0.00096918 824.4515783476069 93.72 0.52771 87.544 87.334 87.862 -6.1757 54 30 2 0 0 0 0.19792 2 62099 62099;62235 70.716 6.4792 1 12178000 44369 15827 29354 30092 52336;52337 52336 0.025184244603906336 PANDVPVI 8 Unmodified _PANDVPVI_ 0 0 0 ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF ENST00000602927.1_1_4:57254011-57254110:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 412.729261 823.443968 0.0048772 2.0129E-06 1.184 0.00048866 1.1888 0.00049067 412.72965220305616 85.79 0.16675 85.79 85.723 85.89 0 0.0038817 0.0008436 NaN 23.148 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 178110 44370 15827 29354 30092 0.025184244603906336 PANFWERSH 9 Unmodified _PANFWERSH_ 0 0 0 ENST00000378679.7_1_5:132162167-132166338:-|nuORF ENST00000378679.7_1_5:132162167-132166338:-|nuORF ENST00000378679.7_1_5:132162167-132166338:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.8483581542969 3 381.84919 1142.52574 NaN NaN NaN NaN NaN NaN NaN 19.348 1 16.692 16.192 17.192 -2.6564 0 0 0 0.82396 1 10239 10239 2.7352 0 1 44371 12550 29355 30093 52338 52338 -0.03982080127821064 PANKWSLE 8 Unmodified _PANKWSLE_ 0 0 0 REV__ENST00000581691.5_2_17:80285027-80291886:-|nuORF REV__ENST00000581691.5_2_17:80285027-80291886:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7447814941406 2 472.745442 943.476331 NaN NaN NaN NaN NaN NaN NaN 17.007 1 17.007 16.507 17.507 0 0 0 0 0.97444 1 8344 8344 5.2307 0 1 + 44372 29069 29356 30094 52339 52339 0.00233211863383076 PANQRCTRSL 10 Unmodified _PANQRCTRSL_ 0 0 0 REV__ENST00000395936.5_2_17:15162478-15165760:-|nuORF REV__ENST00000395936.5_2_17:15162478-15165760:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.80029296875 2 573.295839 1144.57712 0.23885 0.00013693 2.9327 0.0016813 3.1715 0.0018182 573.7999959766079 93.274 1.069 87.098 86.534 87.603 -6.1757 267 72 5 0 0 0 0.5905 1 61870 61870 11.64 1.5664 1 521850000 + 44373 25431 29357 30095 52340 52340 0.010619205745797444 PANVRKPTPR 10 Unmodified _PANVRKPTPR_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5626831054688 3 379.228001 1134.66217 0.011483 4.3549E-06 0.81108 0.00030758 0.82256 0.00031194 379.56271263810635 34.999 0.22341 35.026 34.878 35.102 0.027405 15 9 2 0 0 0 0.65891 1 18448 18448 7.4771 1.2852 1 2151100 44374 543 29358 30096 52341 52341 0.10023034102687234 PANYFHVL 8 Unmodified _PANYFHVL_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7506408691406 2 480.750527 959.486502 -0.15546 -7.4739E-05 -0.061594 -2.9611E-05 -0.21706 -0.00010435 480.75061834947473 22.368 0.36345 22.368 22.123 22.486 0 64 17 4 0 0 0 0.50586 1 11377 11377 34.187 4.3468 1 40869000 44375 9955 29359 30097 52342 52342 0.0051381958861611565 PANYFHVL 8 Unmodified _PANYFHVL_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7494812011719 2 480.750527 959.486502 0.0064748 3.1127E-06 -1.1261 -0.00054139 -1.1196 -0.00053827 480.7500923178132 22.572 0.35215 22.595 22.442 22.794 0.022896 37 14 3 0 0 0 0.67481 1 11577 11577 19.439 2.3261 1 11211000 44376 9955 29359 30097 52343 52343 0.0051381958861611565 PANYFHVL 8 Unmodified _PANYFHVL_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7510681152344 2 480.750527 959.486502 0.20681 9.9425E-05 0.26519 0.00012749 0.472 0.00022692 480.7506257371419 22.166 0.32609 22.18 22.017 22.343 0.013796 30 13 3 0 0 0 0.5953 1 11361 11361 26.341 0.073138 1 2317000 44377 9955 29359 30097 52344 52344 0.0051381958861611565 PANYFHVL 8 Unmodified _PANYFHVL_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7498779296875 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 22.33 1 22.348 21.848 22.848 0.01749 0 0 0 0.97444 1 11466 11466 2.5775 0.27475 1 44378 9955 29359 30097 52345 52345 0.0051381958861611565 PANYFHVL 8 Unmodified _PANYFHVL_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL;ENST00000490844.1_1_10:50943276-50946169:-|nuORF nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MSMS AL20221201_MKP_PDAC_01 4 480.7506408691406 2 480.750527 959.486502 NaN NaN NaN NaN NaN NaN NaN 26.373 1 23.421 22.921 23.921 -2.9511 0 0 0 0.73801 1 14529 14529 26.341 0.073138 1 44379 9955 29359 30097 52346 52346 0.0051381958861611565 PAPAFWGR 8 Unmodified _PAPAFWGR_ 0 0 0 ENST00000397661.6_1_19:13205763-13205919:+|nuORF ENST00000397661.6_1_19:13205763-13205919:+|nuORF ENST00000397661.6_1_19:13205763-13205919:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.2378234863281 2 451.237587 900.460622 NaN NaN NaN NaN NaN NaN NaN 21.916 1 19.181 18.681 19.681 -2.7348 0 0 0 0.97444 1 11767 11767 2.8892 0 1 44380 12827 29360 30098 52347 52347 0.006409701369989307 PAPALDGPT 9 Unmodified _PAPALDGPT_ 0 0 0 REV__ENSG00000137393|ENST00000259939|RNF144B REV__ENSG00000137393|ENST00000259939|RNF144B MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.7207336425781 2 419.718893 837.423233 0.5068 0.00021271 1.8635 0.00078214 2.3703 0.00099485 419.71980193204496 16.596 0.086441 14.039 13.979 14.065 -2.557 13 12 2 0 0 0 0.55144 1 8614 8614 4.3292 0 1 1242100 + 44381 20236 29361 30099 52348 52348 -0.0019816591926655747 PAPAQSFR 8 Unmodified _PAPAQSFR_ 0 0 0 REV__nc|ENSG00000104973|Q71SY5-5|MED25 REV__nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2323303222656 2 437.232502 872.450451 1.0131 0.00044295 1.0951 0.0004788 2.1082 0.00092176 437.2328444331293 52.581 0.34103 52.522 52.328 52.669 -0.058918 32 16 3 0 0 0 0.80624 1 28438 28438 2.8892 0 1 3892000 + 44382 29547 29362 30100 52349 52349 0.009123624117705731 PAPAQSFR 8 Unmodified _PAPAQSFR_ 0 0 0 REV__nc|ENSG00000104973|Q71SY5-5|MED25 REV__nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 437.232502 872.450451 0.08329 3.6417E-05 6.2431 0.0027297 6.3263 0.0027661 437.2356907692182 52.445 0.22398 52.445 52.243 52.467 0 -0.038496 0.0044543 NaN 2.8892 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1251500 + 44383 29547 29362 30100 0.009123624117705731 PAPAQSFR 8 Unmodified _PAPAQSFR_ 0 0 0 REV__nc|ENSG00000104973|Q71SY5-5|MED25 REV__nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 437.232502 872.450451 1.0131 0.00044295 1.0951 0.0004788 2.1082 0.00092176 437.2328444331293 52.581 0.34103 52.522 52.328 52.669 -0.058918 0.038496 -4.738E-05 NaN 2.8892 32 16 3 NaN NaN NaN NaN 0 NaN NaN 0 3892000 + 44384 29547 29362 30100 0.009123624117705731 PAPATWSCL 9 Unmodified _PAPATWSCL_ 0 0 0 REV__ENST00000273317.4_1_3:45637602-45637653:+|nuORF REV__ENST00000273317.4_1_3:45637602-45637653:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 473.2290344238281 2 473.228571 944.442588 NaN NaN NaN NaN NaN NaN NaN 46.686 1 41.606 41.106 42.106 -5.0805 0 0 0 0.6032 1 28888 28888 12.532 0 1 + 44385 25156 29363 30101 52350 52350 -0.03185532900045018 PAPCKSTSLLS 11 Unmodified _PAPCKSTSLLS_ 0 0 0 ENST00000398083.5_1_20:30450513-30457770:-|nuORF ENST00000398083.5_1_20:30450513-30457770:-|nuORF ENST00000398083.5_1_20:30450513-30457770:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5298156738281 3 368.530358 1102.56925 -0.26669 -9.8282E-05 -0.5729 -0.00021113 -0.83958 -0.00030941 368.52953934904605 21.383 0.12098 21.411 21.341 21.462 0.028357 7 5 2 0 0 0 0.74429 1 10868 10868 0.094841 0.094841 1 790510 44386 12840 29364 30102 52351 52351 0.022063485344460787 PAPCLHGCKEL 11 Unmodified _PAPCLHGCKEL_ 0 0 0 REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1 REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.287841796875 2 584.286094 1166.55763 0.42093 0.00024594 0.63719 0.0003723 1.0581 0.00061824 584.2864794948566 57.606 1.2835 57.606 57.346 58.63 0 212 55 6 0 0 0 0.42108 1 32266 32266 20.415 0 1 3923599999.9999995 + 44387 22482 29365 30103 52352 52352 -0.018981717605129234 PAPCMETFY 9 Unmodified _PAPCMETFY_ 0 0 0 REV__ENST00000354883.10_1_3:66428817-66428886:+|nuORF REV__ENST00000354883.10_1_3:66428817-66428886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.4829711914062 3 353.48224 1057.42489 0.24425 8.6338E-05 1.6078 0.00056833 1.852 0.00065466 353.4828379223708 52.846 0.30027 52.846 52.657 52.958 0 17 13 2 0 0 0 0.57331 1 29273 29273 2.9952 0.26005 1 1589300 + 44388 25796 29366 30104 52353 52353 -0.1015261621719219 PAPDFIRTQME 11 Unmodified _PAPDFIRTQME_ 0 0 0 REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5491333007812 3 435.5483 1303.62307 1.0897 0.00047463 -0.89986 -0.00039193 0.18987 8.2699E-05 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.68427 1 10422 10422 4.7159 4.7159 1 1375000000 + 44389 29117 29367 30105 52354 52354 -0.01659479033810385 PAPDGKGFR 9 Unmodified _PAPDGKGFR_ 0 0 0 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 ENSG00000142619|ENST00000375460|PADI3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7286071777344 2 472.751059 943.487565 -0.22471 -0.00010623 -2.1687 -0.0010252 -2.3934 -0.0011315 472.7505975494643 25.284 0.10611 25.284 25.239 25.346 0 6 4 2 0 0 0 0.209 1 12957 12957 7.2892 0 1 243550 44390 5432 29368 30106 52355 52355 0.01356033957517866 PAPEPSAAQY 10 Unmodified _PAPEPSAAQY_ 0 0 0 REV__ENST00000258416.7_2_2:233415057-233415225:+|nuORF REV__ENST00000258416.7_2_2:233415057-233415225:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2442626953125 2 515.745639 1029.47673 -0.20562 -0.00010605 0.1133 5.8435E-05 -0.092321 -4.7614E-05 515.7451200558301 44.882 0.090366 44.567 44.519 44.609 -0.31585 6 4 2 0 0 0 0.23117 1 23962 23962 11.64 0.81637 1 3080200 + 44391 24942 29369 30107 52356 52356 -0.036834132074318404 PAPFNLYMF 9 Unmodified _PAPFNLYMF_ 0 0 0 ENSG00000145934|ENST00000518659|TENM2;nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000218336|ENST00000511685|TENM3 ENSG00000145934|ENST00000518659|TENM2;ENSG00000218336|ENST00000511685|TENM3 ENSG00000145934|ENST00000518659|TENM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2971801757812 2 550.267696 1098.52084 NaN NaN NaN NaN NaN NaN NaN 35.299 1 35.299 34.799 35.799 0 0 0 0 0.43505 1 18655 18655 18.135 8.0611 1 44392 5741;10544 29370 30108 52357 52357 -0.02448100314813928 PAPGRNEIFSP 11 Unmodified _PAPGRNEIFSP_ 0 0 0 ENST00000547268.1_1_12:108147850-108154343:-|nuORF ENST00000547268.1_1_12:108147850-108154343:-|nuORF ENST00000547268.1_1_12:108147850-108154343:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3033447265625 2 592.806562 1183.59857 -0.026343 -1.5616E-05 3.1609 0.0018738 3.1346 0.0018582 592.8078754523324 77.033 0.57004 77.083 76.676 77.246 0.05011 53 23 4 0 0 0 0.29297 1 42371 42371 11.495 2.1116 1 7458000 44393 15121 29371 30109 52358 52358 0.01411628874939197 PAPHLGTL 8 Unmodified _PAPHLGTL_ 0 0 0 ENST00000455294.1_1_16:698589-699174:-|nuORF ENST00000455294.1_1_16:698589-699174:-|nuORF ENST00000455294.1_1_16:698589-699174:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.232666015625 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 4.7467 1 4.7467 4.2467 5.2467 0 0 0 0 0.97444 1 2285 2285 0.69038 0 1 44394 13581 29372 30110 52359 52359 0.03934148042867491 PAPHPAPAL 9 Unmodified _PAPHPAPAL_ 0 0 0 REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7459716796875 2 435.745245 869.475937 NaN NaN NaN NaN NaN NaN NaN 26.791 1 26.791 26.291 27.291 0 0 0 0 0.24185 1 13785 13785 28.173 7.302 1 + 44395 24962 29373 30111 52360 52360 0.03597836934170573 PAPHRNRHPL 10 Unmodified _PAPHRNRHPL_ 0 0 0 REV__ENST00000388948.7_2_15:101567474-101569278:+|nuORF REV__ENST00000388948.7_2_15:101567474-101569278:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8340454101562 2 597.83378 1193.65301 NaN NaN NaN NaN NaN NaN NaN 99.982 1 99.946 99.446 100.45 -0.036301 0 0 0 0.98914 1 55534 55534 1.8442 0 1 + 44396 26355 29374 30112 52361 52361 0.063926855370255 PAPIGVPWA 9 Unmodified _PAPIGVPWA_ 0 0 0 REV__ENSG00000123989|ENST00000243776|CHPF REV__ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2562866210938 2 454.255446 906.496338 1.1895 0.00054035 -0.042052 -1.9102E-05 1.1475 0.00052124 454.2553787282327 70.605 0.32243 70.64 70.463 70.785 0.035507 23 14 2 0 0 0 0.22317 1 38883 38883 20.871 0 1 1612300 + 44397 19409 29375 30113 52362 52362 0.03935007593975115 PAPIGVPWA 9 Unmodified _PAPIGVPWA_ 0 0 0 REV__ENSG00000123989|ENST00000243776|CHPF REV__ENSG00000123989|ENST00000243776|CHPF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 454.255446 906.496338 1.1895 0.00054035 -0.042052 -1.9102E-05 1.1475 0.00052124 454.2553787282327 70.605 0.32243 70.64 70.463 70.785 0.035507 0 0 NaN 20.871 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1612300 + 44398 19409 29375 30113 0.03935007593975115 PAPKEELTI 9 Unmodified _PAPKEELTI_ 0 0 0 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2813110351562 2 499.281857 996.549162 NaN NaN NaN NaN NaN NaN NaN 40.201 1 40.201 39.701 40.701 0 0 0 0 0.14 1 21593 21593 37.974 7.3375 1 + 44399 23408 29376 30114 52363 52363 0.05074920866127286 PAPLAPLA 8 Unmodified _PAPLAPLA_ 0 0 0 REV__ENSG00000130487|ENST00000648057|KLHDC7B REV__ENSG00000130487|ENST00000648057|KLHDC7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5538330078125 2 375.231439 748.448326 0.034847 1.3076E-05 -1.3137 -0.00049295 -1.2789 -0.00047988 375.23091537204743 54.337 0.13636 54.27 54.202 54.338 -0.066936 8 6 2 0 0 0 8.7369 1 29498 29498 0 0 1 963160 + 44400 19722 29377 30115 52364 52364 0.06403933673925621 PAPLCPPLGP 10 Unmodified _PAPLCPPLGP_ 0 0 0 REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF REV__ENST00000332783.11_1_15:101142769-101143240:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2621459960938 2 481.262413 960.510274 NaN NaN NaN NaN NaN NaN NaN 58.888 1 58.398 57.898 58.898 -0.49079 0 0 0 0.96627 1 32031 32031 4.3292 1.44 1 + 44401 25616 29378 30116 52365 52365 0.028439170307706263 PAPLGTLVLT 10 Unmodified _PAPLGTLVLT_ 0 0 0 nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 MSMS AL20221201_MKP_PDAC_01 4 491.3038635253906 2 491.302593 980.590633 NaN NaN NaN NaN NaN NaN NaN 104.58 1 98.401 97.901 98.901 -6.1757 0 0 0 0.97302 1 70026 70026 3.5965 0 1 44402 6077 29379 30117 52366 52366 0.09956101625448355 PAPLLLLT 8 Unmodified _PAPLLLLT_ 0 0 0 ENST00000407418.7_1_22:39260685-39261309:-|nuORF ENST00000407418.7_1_22:39260685-39261309:-|nuORF ENST00000407418.7_1_22:39260685-39261309:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 419.2737426757812 2 419.275847 836.537141 NaN NaN NaN NaN NaN NaN NaN 14.638 1 12.135 11.635 12.635 -2.5029 0 0 0 0.97444 1 7449 7449 0.79363 0 1 44403 12942 29380 30118 52367 52367 0.1123334891359491 PAPLPPQGM 9 Oxidation (M) _PAPLPPQGM(Oxidation (M))_ PAPLPPQGM(1) PAPLPPQGM(44) 0 0 1 ENSG00000108349|ENST00000264645|CASC3 ENSG00000108349|ENST00000264645|CASC3 ENSG00000108349|ENST00000264645|CASC3 MSMS AL20221201_MKP_PDAC_01 4 462.2362976074219 2 462.236396 922.458238 NaN NaN NaN NaN NaN NaN NaN 36.488 1 32.295 31.795 32.795 -4.1928 0 0 0 0.096036 1 21313 21313 44.407 12.29 1 44404 2560 29381 30119 52368 52368 442 -0.006092463829645567 PAPMMFRT 8 Unmodified _PAPMMFRT_ 0 0 0 ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.476318359375 1 950.458655 949.451379 -0.16793 -0.00015961 1.0447 0.00099298 0.87681 0.00083337 950.4594152402182 58.069 0.86756 58.069 57.716 58.583 0 80 35 3 0 0 0 0.80975 1 32218 32218 0.79363 0.10326 1 10044000 44405 12849 29382 30120 52369 52369 -0.025368825352074964 PAPMMFRT 8 Unmodified _PAPMMFRT_ 0 0 0 ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF ENST00000398341.7_1_21:44000866-44001409:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 950.458655 949.451379 -0.16793 -0.00015961 1.0447 0.00099298 0.87681 0.00083337 950.4594152402182 58.069 0.86756 58.069 57.716 58.583 0 0 0 NaN 0.79363 80 35 3 NaN NaN NaN NaN 0 NaN NaN 0 10044000 44406 12849 29382 30120 -0.025368825352074964 PAPNSEVVLP 10 Unmodified _PAPNSEVVLP_ 0 0 0 ENSG00000197406|ENST00000510508|DIO3 ENSG00000197406|ENST00000510508|DIO3 ENSG00000197406|ENST00000510508|DIO3 MSMS AL20221201_MKP_PDAC_01 4 511.3281860351562 2 511.779482 1021.54441 NaN NaN NaN NaN NaN NaN NaN 98.044 1 91.868 91.368 92.368 -6.1757 0 0 0 0.36315 1 64993 64993 33.445 0.65921 1 44407 9949 29383 30121 52370 52370 0.034500367233818 PAPPHQPMG 9 Unmodified _PAPPHQPMG_ 0 0 0 REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2267150878906 2 466.226362 930.438172 -0.12921 -6.0242E-05 0.44131 0.00020575 0.31209 0.00014551 466.2261733258662 26.85 0.25151 26.85 26.679 26.93 0 19 11 3 0 0 0 0.53666 1 13814 13814 5.2307 0 1 1176900 + 44408 21664 29384 30122 52371 52371 -0.02982997322931169 PAPPHQPMG 9 Unmodified _PAPPHQPMG_ 0 0 0 REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 466.226362 930.438172 0.23958 0.0001117 -0.86198 -0.00040188 -0.6224 -0.00029018 466.22599979523824 26.655 0.14229 26.684 26.59 26.733 0.028664 -0.08313 -0.0008851 NaN 5.2307 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3608900 + 44409 21664 29384 30122 -0.02982997322931169 PAPPLCLIF 9 Unmodified _PAPPLCLIF_ 0 0 0 ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENST00000496432.6_1_1:10713095-10754402:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.2686157226562 2 485.775157 969.53576 0.98189 0.00047698 -1.2105 -0.00058804 -0.22864 -0.00011107 485.7746097256929 19.32 0.29926 16.664 16.472 16.771 -2.6564 48 21 3 0 0 0 0.21242 1 10125 10125 2.3027 0 1 20266000 44410 14369 29385 30123 52372 52372 0.0497739155320005 PAPPQGNTASK 11 Unmodified _PAPPQGNTASK_ 0 0 0 REV__nc|ENSG00000100433|P57789|KCNK10 REV__nc|ENSG00000100433|P57789|KCNK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.777587890625 2 534.277638 1066.54072 -0.036634 -1.9573E-05 -4.0582 -0.0021682 -4.0948 -0.0021878 534.7780982291092 38.455 0.19078 38.168 38.048 38.239 -0.28687 17 8 3 0 0 0 0.68427 1 20239 20239 5.7319 0.50118 1 1312600 + 44411 18067 29386 30124 52373 52373 0.010113669495240174 PAPPTVEQI 9 Unmodified _PAPPTVEQI_ 0 0 0 ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENSG00000119559|ENST00000585675|C19orf25;ENST00000589421.1_1_19:1478470-1478902:-|nuORF;nc|nan|Q9UFG5-2|C19orf25 ENST00000592605.1_1_19:1478547-1479204:-|nuORF ENST00000592605.1_1_19:1478547-1479204:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 476.2273559570312 2 476.260925 950.507297 0.96647 0.00046029 0.73648 0.00035076 1.7029 0.00081105 476.26194487010264 34.75 0.43958 30.655 30.533 30.973 -4.0951 34 25 2 0 0 0 0.11012 1 20290 20290 36.044 3.7387 1 4934500 44412 3447 29387 30125 52374 52374 0.030063651776117695 PAPQGHGF 8 Unmodified _PAPQGHGF_ 0 0 0 ENST00000554803.5_3_14:35452198-35465902:+|nuORF;ENST00000556994.5_1_14:35452198-35465902:+|nuORF ENST00000554803.5_3_14:35452198-35465902:+|nuORF ENST00000554803.5_3_14:35452198-35465902:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.6971130371094 2 405.698295 809.382037 NaN NaN NaN NaN NaN NaN NaN 24.242 1 21.415 20.915 21.915 -2.8273 0 0 0 0.97444 1 13184 13184 2.8892 0 1 44413 15220 29388 30126 52375 52375 -0.030278821681008594 PAPRHQGAL 9 Unmodified _PAPRHQGAL_ 0 0 0 ENST00000600252.5_1_19:15219815-15220064:+|nuORF ENST00000600252.5_1_19:15219815-15220064:+|nuORF ENST00000600252.5_1_19:15219815-15220064:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2696228027344 2 473.764501 945.514448 -0.2306 -0.00010925 -0.40342 -0.00019113 -0.63402 -0.00030037 473.7636372644502 30.819 0.47119 30.819 30.503 30.974 0 55 22 3 0 0 0 0.37804 1 15932 15932 13.508 0 1 10043000 44414 15796 29389 30127 52376 52376 0.03951142568701016 PAPRPHPTPPV 11 Unmodified _PAPRPHPTPPV_ 0 0 0 REV__ENSG00000060709|ENST00000690449|RIMBP2 REV__ENSG00000060709|ENST00000690449|RIMBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2208862304688 3 389.220735 1164.64038 -0.11817 -4.5995E-05 0.31883 0.00012409 0.20066 7.8099E-05 389.2205960446433 29.919 0.39315 29.95 29.84 30.233 0.030106 27 15 3 0 0 0 0.71259 1 15646 15646 3.0723 0.077021 1 1943800 + 44415 17329 29390 30128 52377 52377 0.06464229354128292 PAPSTVHF 8 Unmodified _PAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2206726074219 2 428.221603 854.428653 0.1818 7.7849E-05 0.22409 9.5961E-05 0.40589 0.00017381 428.2217383591363 38.107 0.20078 38.107 37.947 38.148 0 15 9 2 0 0 0 0.2655 1 20304 20304 59.795 25.608 1 2080200 44416 6367 29391 30129 52378 52378 -0.004384423368151147 PAPSTVHF 8 Unmodified _PAPSTVHF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2223510742188 2 428.221603 854.428653 1.1998 0.00051377 -1.7049 -0.00073009 -0.50518 -0.00021633 428.22073662605817 42.697 0.34098 38.012 37.885 38.226 -4.6846 26 21 2 0 0 0 0.21786 1 25824 25824 67.035 26.587 1 12553000 44417 6367 29391 30129 52379 52379 -0.004384423368151147 PAPVNGSKWTY 11 Unmodified _PAPVNGSKWTY_ 0 0 0 nc|ENSG00000074410|O43570-2|CA12;ENSG00000074410|ENST00000178638|CA12 nc|ENSG00000074410|O43570-2|CA12 nc|ENSG00000074410|O43570-2|CA12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.27490234375 2 610.308938 1218.60332 NaN NaN NaN NaN NaN NaN NaN 27.538 1 27.538 27.038 28.038 0 0 0 0 0.93613 1 14191 14191 5.2969 0.39987 1 44418 1126 29392 30130 52380 52380 0.0027651301770674763 PAPVPRLLAT 10 Unmodified _PAPVPRLLAT_ 0 0 0 ENST00000570631.5_1_16:67942785-67942899:+|nuORF ENST00000570631.5_1_16:67942785-67942899:+|nuORF ENST00000570631.5_1_16:67942785-67942899:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2796020507812 2 517.821484 1033.62842 -0.032963 -1.7069E-05 -0.41014 -0.00021238 -0.44311 -0.00022945 517.8211512959217 32.628 0.15887 32.658 32.539 32.698 0.029743 8 5 2 0 0 0 0.23162 1 17141 17141 12.241 0 1 1608200 44419 15479 29393 30131 52381 52381 0.1129461261095912 PAPVWLTNFL 10 Unmodified _PAPVWLTNFL_ 0 0 0 REV__ENST00000518357.1_1_5:169758569-169760446:+|nuORF REV__ENST00000518357.1_1_5:169758569-169760446:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.5498046875 3 386.54997 1156.62808 -0.49081 -0.00018972 -1.6753 -0.00064759 -2.1661 -0.00083731 386.5498927767161 25.585 0.20712 25.585 25.447 25.654 0 17 9 3 0 0 0 0.69377 1 13128 13128 3.5871 2.3722 1 614540 + 44420 28244 29394 30132 52382 52382 0.056031928910670104 PAQAWGPL 8 Unmodified _PAQAWGPL_ 0 0 0 ENST00000506838.5_1_4:668467-669238:+|nuORF ENST00000506838.5_1_4:668467-669238:+|nuORF ENST00000506838.5_1_4:668467-669238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.4474487304688 1 839.441015 838.433738 0.87343 0.00073319 0.29527 0.00024786 1.1687 0.00098106 839.4409806402103 54.865 0.50297 49 48.746 49.249 -5.8653 67 30 3 0 0 0 0.74163 1 34990 34990 13.508 2.3934 1 43413000 44421 14529 29395 30133 52383 52383 0.00805861525805085 PAQELVVKN 9 Unmodified _PAQELVVKN_ 0 0 0 ENST00000417775.5_1_1:75199053-75199086:-|nuORF ENST00000417775.5_1_1:75199053-75199086:-|nuORF ENST00000417775.5_1_1:75199053-75199086:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.7891540527344 2 499.287474 996.560395 0.89245 0.00044559 -0.54239 -0.00027081 0.35005 0.00017478 499.288999382332 80.336 0.42479 74.16 74.037 74.462 -6.1757 31 23 2 0 0 0 0.17718 1 52834 52834 14.838 1.3304 1 8990200 44422 13059 29396 30134 52384 52384 0.061977429602734446 PAQGSSPRPSI 11 Unmodified _PAQGSSPRPSI_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130;SAP130|p.V767Wfs*18|1|0.09|ENSG00000136715|chr2:127955082-127955082|C/-|frameshift_variant nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1951599121094 3 366.196367 1095.56727 NaN NaN NaN NaN NaN NaN NaN 19.351 1 19.359 18.859 19.859 0.0078487 0 0 0 0.93613 1 9840 9840 2.4348 0.97967 1 44423 4847 29397 30135 52385 52385 0.023310558408411453 PAQHITLFL 9 Unmodified _PAQHITLFL_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3015747070312 2 520.300384 1038.58622 0.7128 0.00037087 0.3918 0.00020385 1.1046 0.00057472 520.3005696811913 67.973 0.65668 61.797 61.531 62.187 -6.1757 66 38 2 0 0 0 0.12424 1 44608 44608 30.637 2.1497 1 72218000 44424 4276 29398 30136 52386 52386 0.06846637202556849 PAQHLNGS 8 Unmodified _PAQHLNGS_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2068481445312 2 412.206484 822.398415 NaN NaN NaN NaN NaN NaN NaN 22.466 1 22.483 21.983 22.983 0.01749 0 0 0 0.97444 1 11538 11538 0.79363 0 1 44425 4544 29399 30137 52387 52387 -0.01988801001994034 PAQLESPM 8 Unmodified _PAQLESPM_ 0 0 0 nc|ENSG00000116396|Q03721-2|KCNC4;ENST00000489935.1_1_1:110754121-110766653:+|nuORF;KCNC4|p.T559Lfs*39|1|0.2|ENSG00000116396|chr1:110226026-110226042|CTGGCCTCACCCAACCC/-|frameshift_variant;ENSG00000116396|ENST00000438661|KCNC4;nc|ENSG00000116396|Q03721|KCNC4 nc|ENSG00000116396|Q03721-2|KCNC4 nc|ENSG00000116396|Q03721-2|KCNC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7140197753906 2 436.712753 871.410954 0.28342 0.00012377 2.224 0.00097123 2.5074 0.001095 436.71369600823385 59.336 0.25769 58.845 58.729 58.987 -0.49079 16 11 2 0 0 0 0.72953 1 32312 32312 14.582 2.0501 1 1182300 44426 3217 29400 30138 52388 52388 -0.029895256539816728 PAQLPPSD 8 Unmodified _PAQLPPSD_ 0 0 0 REV__nc|ENSG00000183248|Q9H6K5-2|PRR36 REV__nc|ENSG00000183248|Q9H6K5-2|PRR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.4126586914062 1 824.414859 823.407583 -0.02046 -1.6868E-05 -0.33915 -0.0002796 -0.35961 -0.00029647 824.4145425583198 63.984 0.413 63.984 63.801 64.214 0 22 16 2 0 0 0 0.5953 2 35726 35625;35726 26.341 0 1 784020 + 44427 23331 29401 30139 52389;52390 52390 -0.011184524363329729 PAQQQWHP 8 Unmodified _PAQQQWHP_ 0 0 0 REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2399597167969 2 496.240858 990.467164 0.4952 0.00024574 -0.56724 -0.00028149 -0.072045 -3.5752E-05 496.2401237669392 60.843 0.37811 60.843 60.646 61.024 0 35 15 3 0 0 0 0.80143 1 33993 33993 5.7604 2.8712 1 1717000 + 44428 21664 29402 30140 52391 52391 -0.028451367022967133 PAQQSVPL 8 Unmodified _PAQQSVPL_ 0 0 0 ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.4627075195312 1 839.462144 838.454868 0.24642 0.00020686 0.64218 0.00053908 0.8886 0.00074594 839.46342752989 47.395 0.28573 47.395 47.231 47.517 0 24 12 3 0 0 0 0.40035 1 25894 25894 44.407 4.4497 1 3374600 44429 15399 29403 30141 52392 52392 0.029178268346640834 PAQQSVPL 8 Unmodified _PAQQSVPL_ 0 0 0 ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2347717285156 2 420.23471 838.454868 0.2818 0.00011842 0.87367 0.00036715 1.1555 0.00048557 420.23513811230896 47.372 0.30562 47.372 47.231 47.537 0 27 13 3 0 0 0 0.40035 1 25904 25904 44.407 12.102 1 5515400 44430 15399 29403 30141 52393 52393 0.029178268346640834 PAQQSVPL 8 Unmodified _PAQQSVPL_ 0 0 0 ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF ENST00000565181.1_1_15:72766821-72767304:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 420.2356872558594 2 420.23471 838.454868 NaN NaN NaN NaN NaN NaN NaN 54.421 1 48.556 48.056 49.056 -5.8653 0 0 0 0.40668 1 34522 34522 53.576 13.127 1 44431 15399 29403 30141 52394 52394 0.029178268346640834 PAQTLDHRSL 10 Unmodified _PAQTLDHRSL_ 0 0 0 ENSG00000166454|ENST00000299575|ATMIN;nc|ENSG00000166454|O43313-2|ATMIN ENSG00000166454|ENST00000299575|ATMIN ENSG00000166454|ENST00000299575|ATMIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8719177246094 3 379.871883 1136.59382 1.8475 0.00070183 0.98687 0.00037488 2.8344 0.0010767 379.87225236561204 33.811 0.50802 29.825 29.589 30.097 -3.9853 59 27 3 0 0 0 0.66569 1 19304 19304 6.1918 2.6048 1 17910000 44432 7492 29404 30142 52395 52395 0.030987447321649597 PAQVRLRLL 9 Unmodified _PAQVRLRLL_ 0 0 0 REV__ENST00000340134.4_1_11:1769161-1771748:-|nuORF REV__ENST00000340134.4_1_11:1769161-1771748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3482666015625 2 533.3482 1064.68185 0.20284 0.00010819 0.16044 8.5569E-05 0.36328 0.00019376 533.348169526648 55.135 0.23813 55.066 54.98 55.218 -0.068737 22 11 2 0 0 0 0.18465 1 29961 29961 24.674 0 1 3625000 + 44433 25689 29405 30143 52396 52396 0.15209410113470767 PARAREAAL 9 Unmodified _PARAREAAL_ 0 0 0 REV__nc|ENSG00000163945|Q2YD98-2|UVSSA REV__nc|ENSG00000163945|Q2YD98-2|UVSSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7785949707031 2 477.777608 953.540663 1.1857 0.00056652 -0.49726 -0.00023758 0.68848 0.00032894 477.7773282065802 20.177 0.50457 17.521 17.294 17.798 -2.6564 107 32 4 0 0 0 0.25681 1 10864 10864 19.257 0 1 239220000 + 44434 21839 29406 30144 52397 52397 0.0620341174017085 PARCTPDEILL 11 Unmodified _PARCTPDEILL_ 0 0 0 ENST00000305135.9_1_3:183528513-183528570:+|nuORF ENST00000305135.9_1_3:183528513-183528570:+|nuORF ENST00000305135.9_1_3:183528513-183528570:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.326416015625 2 614.323731 1226.63291 0.62103 0.00038151 -0.78206 -0.00048044 -0.16103 -9.8923E-05 614.3233166916076 85.01 0.34328 84.508 84.251 84.594 -0.5015 27 14 3 0 0 0 0.70701 1 46557 46557 3.5965 0 1 696380 44435 11614 29407 30145 52398 52398 0.028657089715352413 PAREEKYLF 9 Unmodified _PAREEKYLF_ 0 0 0 CNGA4|p.E243K|1|0.13|ENSG00000132259|chr11:6240521-6240521|G/A|missense_variant CNGA4|p.E243K|1|0.13|ENSG00000132259|chr11:6240521-6240521|G/A|missense_variant CNGA4|p.E243K|1|0.13|ENSG00000132259|chr11:6240521-6240521|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8734436035156 3 384.873113 1151.59751 0.17048 6.5612E-05 -1.5802 -0.00060819 -1.4098 -0.00054258 384.8725782991734 25.955 0.18383 25.982 25.883 26.067 0.026953 19 9 3 0 0 0 0.20428 1 13436 13436 16.566 3.6933 1 8280500 44436 131 29408 30146 52399 52399 0.02777414506022069 PAREQNRWL 9 Unmodified _PAREQNRWL_ 0 0 0 PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.311279296875 2 585.312346 1168.61014 0.40855 0.00023913 -0.23188 -0.00013572 0.17668 0.00010341 585.3121711230563 28.848 0.37153 28.879 28.73 29.102 0.030106 27 15 3 0 0 0 0.42049 1 15025 15025 11.64 11.64 1 3637300 44437 16686 29409 30147 52400 52400 0.03257870688935327 PAREQNRWL 9 Unmodified _PAREQNRWL_ 0 0 0 PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5440979003906 3 390.54399 1168.61014 0.0020709 8.0876E-07 0.18406 7.1884E-05 0.18613 7.2693E-05 390.54406714918633 28.854 0.6482 28.884 28.651 29.299 0.030106 90 26 4 0 0 0 0.35911 1 15063 15063 14.405 1.5494 1 107460000 44438 16686 29409 30147 52401 52401 0.03257870688935327 PAREQNRWL 9 Unmodified _PAREQNRWL_ 0 0 0 PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3128662109375 2 585.312346 1168.61014 0.81108 0.00047474 -0.70364 -0.00041185 0.10745 6.2889E-05 585.3119489481948 32.054 0.23527 28.359 28.226 28.461 -3.6958 20 12 2 0 0 0 0.20507 1 18217 18217 30.637 9.0996 1 13460000 44439 16686 29409 30147 52402 52402 0.03257870688935327 PAREQNRWL 9 Unmodified _PAREQNRWL_ 0 0 0 PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant PKP4|p.R1108W|1|0.25|ENSG00000144283|chr2:158678646-158678646|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 585.312346 1168.61014 0.40855 0.00023913 -0.23188 -0.00013572 0.17668 0.00010341 585.3121711230563 28.848 0.37153 28.879 28.73 29.102 0.030106 0 0 NaN 11.64 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3637300 44440 16686 29409 30147 0.03257870688935327 PARGGGYCEF 10 Unmodified _PARGGGYCEF_ 0 0 0 ENST00000425202.5_1_19:51162395-51162548:+|nuORF ENST00000425202.5_1_19:51162395-51162548:+|nuORF ENST00000425202.5_1_19:51162395-51162548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7328491210938 2 528.732009 1055.44946 0.099417 5.2565E-05 0.54937 0.00029047 0.64879 0.00034304 528.7324741376434 70.748 0.50569 70.748 70.449 70.954 0 107 46 3 0 0 0 0.5905 1 39340 39340 11.64 3.7301 1 8454700 44441 13159 29410 30148 52403 52403 -0.07604220019470631 PARGPMSH 8 Unmodified _PARGPMSH_ 0 0 0 ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7105407714844 2 426.710879 851.407206 0.49229 0.00021006 -1.4165 -0.00060443 -0.9242 -0.00039437 426.7104780913091 84.74 0.33563 84.241 84.076 84.411 -0.49961 19 14 2 0 0 0 0.80624 1 46382 46382 2.8892 0 1 494790 44442 12619 29411 30149 52404 52404 -0.024441506371772448 PARGPMSH 8 Unmodified _PARGPMSH_ 0 0 0 ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF ENST00000381475.3_1:147851207-147931919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.4121704101562 1 852.414482 851.407206 -0.029387 -2.505E-05 -0.56189 -0.00047896 -0.59128 -0.00050401 852.4142014532281 84.765 0.3142 84.265 84.076 84.39 -0.49961 22 13 2 0 0 0 0.80624 1 46446 46446 2.8892 0 1 1101800 44443 12619 29411 30149 52405 52405 -0.024441506371772448 PARGPPGK 8 Unmodified _PARGPPGK_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2300415039062 2 390.229762 778.444972 0.86611 0.00033798 0.96125 0.00037511 1.8274 0.00071309 390.2302452327547 17.882 0.20806 15.296 15.198 15.407 -2.5866 23 17 2 0 0 0 0.78849 1 9370 9370 9.3474 0 1 2509300 + 44444 19438 29412 30150 52406 52406 0.046886836199519166 PARGPPGK 8 Unmodified _PARGPPGK_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 389.8630676269531 2 390.229762 778.444972 0.86611 0.00033798 0.96125 0.00037511 1.8274 0.00071309 390.2302452327547 17.882 0.20806 15.296 15.198 15.407 -2.5866 23 17 2 0 0 0 8.7369 1 9417 9417 5.2307 0 1 2509300 + 44445 19438 29412 30150 52407 52407 0.046886836199519166 PARGTKHG 8 Unmodified _PARGTKHG_ 0 0 0 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2304992675781 2 412.230294 822.446034 1.3154 0.00054223 -0.21725 -8.9558E-05 1.0981 0.00045267 412.2301100239454 20.176 0.44793 17.52 17.294 17.742 -2.6564 82 29 3 0 0 0 0.72953 1 10768 10768 14.582 0 1 69063000 44446 10938 29413 30151 52408 52408 0.02770897988852994 PARKKILLL 9 Unmodified _PARKKILLL_ 0 0 0 REV__ENSG00000130560|ENST00000371756|UBAC1 REV__ENSG00000130560|ENST00000371756|UBAC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1051.405395507812 1 1051.73501 1050.72774 0.53126 0.00055874 4.2445 0.0044641 4.7758 0.0050228 1051.7403775377063 55.797 0.092915 49.876 49.8 49.893 -5.9211 5 4 2 0 0 0 0.21889 1 35509 35509 0 0 1 9360400 + 44447 19728 29414 30152 52409 52409 0.20440055295694037 PARKRKSKL 9 Unmodified _PARKRKSKL_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3589477539062 2 542.359099 1082.70365 1.4461 0.0007843 -1.8706 -0.0010145 -0.4245 -0.00023023 542.3576426115093 104.82 0.11337 98.641 98.566 98.68 -6.1757 30 14 3 0 0 0 0.59218 1 70148 70148 1.8442 0 1 6509000 44448 717 29415 30153 52410 52410 0.16560214862033718 PARLKIPPFEK 11 Unmodified _PARLKIPPFEK_ 0 0 0 ENST00000567959.5_1_15:75639698-75645080:+|nuORF ENST00000567959.5_1_15:75639698-75645080:+|nuORF ENST00000567959.5_1_15:75639698-75645080:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5992431640625 3 432.599324 1294.77614 -0.032708 -1.415E-05 -0.065489 -2.8331E-05 -0.098198 -4.248E-05 432.59919336960803 51.341 0.51309 51.287 50.986 51.499 -0.053871 65 25 3 0 0 0 0.68427 1 27817 27817 2.6312 0 1 7201400 44449 15446 29416 30154 52411 52411 0.1405450414488314 PARLPAAPA 9 Unmodified _PARLPAAPA_ 0 0 0 ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.2584533691406 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 27.118 1 27.118 26.618 27.618 0 0 0 0 0.6032 1 13963 13963 12.532 0 1 44450 13187 29417 30155 52412 52412 0.06573525825490378 PARLPAAPA 9 Unmodified _PARLPAAPA_ 0 0 0 ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF ENST00000427004.5_1_6:33378256-33380059:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.259033203125 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 30.46 1 26.963 26.463 27.463 -3.497 0 0 0 0.20498 1 17195 17195 30.225 3.3412 1 44451 13187 29417 30155 52413 52413 0.06573525825490378 PARLRCQH 8 Unmodified _PARLRCQH_ 0 0 0 ENST00000395673.7_1_11:44135764-44135809:+|nuORF ENST00000395673.7_1_11:44135764-44135809:+|nuORF ENST00000395673.7_1_11:44135764-44135809:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2901306152344 2 490.763978 979.513402 0.4538 0.00022271 0.28958 0.00014211 0.74338 0.00036482 490.7639896257835 58.953 0.24303 58.462 58.271 58.514 -0.49079 14 11 2 0 0 0 8.7369 1 32023 32023 9.3474 0 1 891130 44452 12776 29418 30156 52414 52414 0.02282604928143428 PARLTAPAL 9 Unmodified _PARLTAPAL_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2800903320312 2 455.279452 908.544351 0.68809 0.00031327 0.064247 2.925E-05 0.75234 0.00034252 455.2794412319826 49.764 0.3126 49.371 49.138 49.451 -0.3923 25 15 2 0 0 0 0.14602 1 26728 26728 28.487 1.6032 1 1834900 + 44453 24588 29419 30157 52415 52415 0.08642081514017264 PARLTAPAL 9 Unmodified _PARLTAPAL_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 455.279452 908.544351 0.68809 0.00031327 0.064247 2.925E-05 0.75234 0.00034252 455.2794412319826 49.764 0.3126 49.371 49.138 49.451 -0.3923 0.037581 -1.8038E-05 NaN 28.487 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1834900 + 44454 24588 29419 30157 0.08642081514017264 PARLTAPAL 9 Unmodified _PARLTAPAL_ 0 0 0 REV__ENSG00000261949|ENST00000610896|GFY REV__ENSG00000261949|ENST00000610896|GFY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 455.279452 908.544351 0.88429 0.0004026 0.16378 7.4564E-05 1.0481 0.00047716 455.2791679657695 49.34 0.22161 49.296 49.175 49.397 -0.04369 -0.037581 7.2589E-05 NaN 28.487 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 661950 + 44455 24588 29419 30157 0.08642081514017264 PARNRRPLY 9 Unmodified _PARNRRPLY_ 0 0 0 REV__ENST00000369776.8_1_X:153640293-153648389:+|nuORF REV__ENST00000369776.8_1_X:153640293-153648389:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.2899169921875 2 571.830706 1141.64686 NaN NaN NaN NaN NaN NaN NaN 75.087 1 75.133 74.633 75.633 0.045959 0 0 0 0.57317 1 41404 41404 13.508 6.2187 1 + 44456 26042 29420 30158 52416 52416 0.08170167305524956 PARPGASPLPR 11 Unmodified _PARPGASPLPR_ 0 0 0 REV__ENST00000493788.5_1_9:131183063-131183351:+|nuORF REV__ENST00000493788.5_1_9:131183063-131183351:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8252563476562 2 559.825089 1117.63563 NaN NaN NaN NaN NaN NaN NaN 21.246 1 21.26 20.76 21.76 0.013796 0 0 0 0.72333 1 10869 10869 15.739 1.5205 1 + 44457 26128 29421 30159 52417 52417 0.08151345211354055 PARPKMLV 8 Unmodified _PARPKMLV_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17;ENST00000543530.1_1_11:73076398-73078822:+|nuORF ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2777709960938 2 456.278398 910.542243 NaN NaN NaN NaN NaN NaN NaN 17.112 1 17.117 16.617 17.617 0.0050564 0 0 0 0.97444 1 8616 8616 2.8892 0 1 44458 2709 29422 30160 52418 52418 0.08339329504576654 PARPPEYRL 9 Unmodified _PARPPEYRL_ 0 0 0 ENST00000470671.1_1_X:71475533-71493153:-|nuORF ENST00000470671.1_1_X:71475533-71493153:-|nuORF ENST00000470671.1_1_X:71475533-71493153:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.9065246582031 3 366.873336 1097.59818 1.5349 0.00056311 0.026104 9.577E-06 1.561 0.00057269 366.87336410135305 40.656 0.53239 36.127 35.873 36.405 -4.5294 103 32 4 0 0 0 0.39863 1 24196 24196 8.1555 1.5252 1 83342000 44459 13855 29423 30161 52419 52419 0.053282539457541134 PARPSPSSP 9 Unmodified _PARPSPSSP_ 0 0 0 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1 MSMS AL20221201_MKP_PDAC_01 4 448.2357177734375 2 448.235242 894.45593 NaN NaN NaN NaN NaN NaN NaN 18.022 1 15.401 14.901 15.901 -2.6215 0 0 0 0.34649 1 9469 9469 22.736 0 1 + 44460 21942 29424 30162 52420 52420 0.004480412035718473 PARPSTLTAP 10 Unmodified _PARPSTLTAP_ 0 0 0 REV__ENST00000264639.8_1_17:38153843-38154179:+|nuORF REV__ENST00000264639.8_1_17:38153843-38154179:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2638549804688 2 505.785099 1009.55564 0.19696 9.962E-05 -2.6091 -0.0013196 -2.4121 -0.00122 505.78355973835426 72.708 0.33327 72.75 72.527 72.86 0.041733 27 15 2 0 0 0 0.21952 1 40106 40106 21.747 4.8044 1 1617900 + 44461 25077 29425 30163 52421 52421 0.05124858817521272 PARPTQQPG 9 Unmodified _PARPTQQPG_ 0 0 0 ENSG00000182218|ENST00000330710|HHIPL1 ENSG00000182218|ENST00000330710|HHIPL1 ENSG00000182218|ENST00000330710|HHIPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.25244140625 2 476.253966 950.493378 NaN NaN NaN NaN NaN NaN NaN 21.658 1 21.672 21.172 22.172 0.013796 0 0 0 0.84737 1 11104 11104 1.8442 0 1 44462 9031 29426 30164 52422 52422 0.01615132469191849 PARQVKAAKV 10 Unmodified _PARQVKAAKV_ 0 0 0 REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF REV__ENST00000419271.1_1_7:63353684-63354623:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5609741210938 3 356.560981 1066.66111 1.0557 0.00037644 0.28837 0.00010282 1.3441 0.00047926 356.5611136140332 22.672 0.36584 19.894 19.706 20.072 -2.7784 59 26 3 0 0 0 0.70895 1 12200 12200 1.9064 0.1641 1 15639000 + 44463 26817 29427 30165 52423 52423 0.13044819733772783 PARRLLLLLT 10 Unmodified _PARRLLLLLT_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;nc|ENSG00000178607|O75460-2|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2644958496094 3 389.264164 1164.77066 NaN NaN NaN NaN NaN NaN NaN 16.891 1 16.892 16.392 17.392 0.0010548 0 0 0 1.0019 1 8362 8362 0.15932 0 1 44464 8762;15581 29428 30166 52424 52424 0.19486825353146742 PARRQPLL 8 Unmodified _PARRQPLL_ 0 0 0 REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF REV__ENST00000289316.2_1_6:26158401-26158455:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.7987670898438 2 475.798343 949.582134 0.16367 7.7873E-05 0.48994 0.00023311 0.65361 0.00031099 475.798528328243 28.089 0.24955 28.119 28.012 28.262 0.029564 14 9 2 0 0 0 0.64035 1 14610 14610 22.453 0 1 4976100 + 44465 25235 29429 30167 52425 52425 0.10532592499521343 PARRRARLC 9 Unmodified _PARRRARLC_ 0 0 0 ENST00000380094.9_1_10:5931535-5931847:-|nuORF ENST00000380094.9_1_10:5931535-5931847:-|nuORF ENST00000380094.9_1_10:5931535-5931847:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7667236328125 2 549.824901 1097.63525 0.77774 0.00042762 -0.20533 -0.0001129 0.57241 0.00031473 549.8250420473009 50.672 0.21813 50.618 50.51 50.728 -0.053871 17 10 2 0 0 0 0.21242 1 27373 27373 5.2307 0.47466 1 2011600 44466 12588 29430 30168 52426 52426 0.09033647010528512 PARRRRRRRR 10 Unmodified _PARRRRRRRR_ 0 0 0 REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2322692871094 4 359.734609 1434.90933 -0.22458 -8.0788E-05 -1.6059 -0.00057769 -1.8305 -0.00065848 359.73391372305537 37.289 0.53047 37.311 37.108 37.639 0.021545 33 24 2 0 0 0 0.24005 1 19743 19743 0.15932 0.064481 1 1475200 + 44467 24894 29431 30169 52427 52427 0.20927225884656764 PARSSPPSP 9 Unmodified _PARSSPPSP_ 0 0 0 ENSG00000130701|ENST00000252998|RBBP8NL ENSG00000130701|ENST00000252998|RBBP8NL ENSG00000130701|ENST00000252998|RBBP8NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2356872558594 2 448.235242 894.45593 -0.29771 -0.00013345 -0.047526 -2.1303E-05 -0.34524 -0.00015475 448.2352588770085 16.867 0.20194 16.867 16.698 16.9 0 76 48 2 0 0 0 0.10734 1 8269 8269 32.305 0 1 721740 44468 4238 29432 30170 52428 52428 0.004480412035718473 PARTPAPAP 9 Unmodified _PARTPAPAP_ 0 0 0 ENSG00000169733|ENST00000310496|RFNG;ENST00000582478.5_1_17:80008786-80009642:-|nuORF ENSG00000169733|ENST00000310496|RFNG ENSG00000169733|ENST00000310496|RFNG MSMS AL20221201_MKP_PDAC_01 4 439.2483215332031 2 439.248152 876.481751 NaN NaN NaN NaN NaN NaN NaN 25.834 1 22.883 22.383 23.383 -2.9511 0 0 0 0.32177 1 14175 14175 24.021 0 1 44469 7908 29433 30171 52429 52429 0.03856935445844556 PARTPGGGRG 10 Unmodified _PARTPGGGRG_ 0 0 0 REV__ENST00000380702.6_2_19:10578104-10578401:+|nuORF REV__ENST00000380702.6_2_19:10578104-10578401:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2490844726562 2 463.251757 924.488962 NaN NaN NaN NaN NaN NaN NaN 29.386 1 29.417 28.917 29.917 0.030106 0 0 0 0.78298 1 15332 15332 13.042 3.695 1 + 44470 26316 29434 30172 52430 52430 0.023696680462990116 PARTPGRP 8 Unmodified _PARTPGRP_ 0 0 0 REV__ENST00000569516.5_1_16:904534-921479:-|nuORF REV__ENST00000569516.5_1_16:904534-921479:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.7646789550781 2 426.245944 850.477334 0.45244 0.00019285 0.61379 0.00026162 1.0662 0.00045448 426.24617212318077 78.845 0.38522 78.9 78.652 79.038 0.05497 23 14 2 0 0 0 8.7369 1 43423 43423 0.79363 0 1 1399700 + 44471 28960 29435 30173 52431 52431 0.046114710229517186 PARTRHLLLAN 11 Unmodified _PARTRHLLLAN_ 0 0 0 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 ENSG00000169704|ENST00000307395|GP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.9014282226562 2 631.37802 1260.74149 NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.2 103.7 104.7 -0.048737 0 0 0 0.94184 1 57880 57880 1.1933 0 1 44472 7903 29436 30174 52432 52432 0.12154681056858863 PARTTKRRPI 10 Unmodified _PARTTKRRPI_ 0 0 0 REV__ENST00000574260.1_1_17:4891116-4891512:+|nuORF REV__ENST00000574260.1_1_17:4891116-4891512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.25 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 70.81 1 70.332 69.832 70.832 -0.47735 0 0 0 0.99897 1 38745 38745 0.77653 0 1 + 44473 29005 29437 30175 52433 52433 0.14134698402403956 PARVALSL 8 Unmodified _PARVALSL_ 0 0 0 nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-3|LRP8 nc|ENSG00000157193|Q14114-2|LRP8 nc|ENSG00000157193|Q14114-2|LRP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7610473632812 2 413.760895 825.507237 -0.30429 -0.0001259 -0.8393 -0.00034727 -1.1436 -0.00047317 413.7605559424004 55.951 0.28154 55.473 55.34 55.621 -0.47798 30 13 3 0 0 0 0.23628 1 30338 30338 64.236 0 1 10438000 44474 16297 29438 30176 52434 52434 0.08750409968274653 PARVARGQL 9 Unmodified _PARVARGQL_ 0 0 0 REV__ENST00000577004.1_1_13:23469166-23490201:-|nuORF REV__ENST00000577004.1_1_13:23469166-23490201:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2928161621094 2 484.293425 966.572297 0.23994 0.0001162 0.8427 0.00040812 1.0826 0.00052432 484.2939125581197 22.927 0.25787 20.148 19.993 20.25 -2.7784 24 16 2 0 0 0 0.39863 1 12335 12335 12.532 0 1 4335500 + 44475 29028 29439 30177 52435 52435 0.08767404494130915 PARVARGQL 9 Unmodified _PARVARGQL_ 0 0 0 REV__ENST00000577004.1_1_13:23469166-23490201:-|nuORF REV__ENST00000577004.1_1_13:23469166-23490201:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 484.293425 966.572297 0.23994 0.0001162 0.8427 0.00040812 1.0826 0.00052432 484.2939125581197 22.927 0.25787 20.148 19.993 20.25 -2.7784 -0.139 0.00052345 NaN 12.532 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4335500 + 44476 29028 29439 30177 0.08767404494130915 PARVCVSGNRL 11 Unmodified _PARVCVSGNRL_ 0 0 0 REV__ENSG00000165617|ENST00000395153|DACT1 REV__ENSG00000165617|ENST00000395153|DACT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2174377441406 3 391.216997 1170.62916 0.44108 0.00017256 1.6994 0.00066484 2.1405 0.0008374 391.21714746560895 23.36 0.45812 20.582 20.381 20.839 -2.7784 61 36 3 0 0 0 0.63851 1 12779 12779 4.7159 1.1289 1 10321000 + 44477 22025 29440 30178 52436 52436 0.05067083988342347 PARWPRPGR 9 Unmodified _PARWPRPGR_ 0 0 0 ENST00000568394.1_1_16:1030490-1030955:-|nuORF ENST00000568394.1_1_16:1030490-1030955:-|nuORF ENST00000568394.1_1_16:1030490-1030955:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7197570800781 3 364.877303 1091.61008 -0.10669 -3.8927E-05 2.4278 0.00088585 2.3211 0.00084692 365.2121482352037 32.978 0.34116 33.008 32.822 33.164 0.029743 18 14 2 0 0 0 0.21822 1 17413 17413 2.4985 0 1 1140300 44478 15451 29441 30179 52437 52437 0.0679391547960222 PARYAAAAGL 10 Unmodified _PARYAAAAGL_ 0 0 0 REV__ENSG00000125816|ENST00000351817|NKX2-4 REV__ENSG00000125816|ENST00000351817|NKX2-4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7669982910156 2 480.766709 959.518865 1.1481 0.00055199 2.4193 0.0011631 3.5674 0.0017151 480.76722071212487 50.928 0.38899 45.279 45.026 45.415 -5.649 43 23 3 0 0 0 0.52888 1 32016 32016 14.838 0.25658 1 32943000 + 44479 19516 29442 30180 52438 52438 0.03748606991587167 PARYFNPL 8 Unmodified _PARYFNPL_ 0 0 0 ENST00000526343.5_1_11:102100776-102101010:+|nuORF ENST00000526343.5_1_11:102100776-102101010:+|nuORF ENST00000526343.5_1_11:102100776-102101010:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2659912109375 2 489.263802 976.513051 0.9147 0.00044753 0.37813 0.00018501 1.2928 0.00063253 489.2640821527491 61.766 0.45683 55.59 55.367 55.823 -6.1757 44 23 3 0 0 0 0.67481 1 39755 39755 19.439 0 1 49709000 44480 14815 29443 30181 52439 52439 0.023855084799379256 PARYYRSQL 9 Unmodified _PARYYRSQL_ 0 0 0 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 MSMS AL20221201_MKP_PDAC_01 4 385.2113952636719 3 385.208607 1152.60399 NaN NaN NaN NaN NaN NaN NaN 31.915 1 28.219 27.719 28.719 -3.6958 0 0 0 0.46757 1 18125 18125 11.495 2.5185 1 + 44481 21751 29444 30182 52440 52440 0.03379352457409368 PASAALLQP 9 Unmodified _PASAALLQP_ 0 0 0 REV__ENST00000372444.6_2_6:43445340-43446410:+|nuORF REV__ENST00000372444.6_2_6:43445340-43446410:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7163391113281 2 434.25036 866.486168 -0.29116 -0.00012644 0.028656 1.2444E-05 -0.26251 -0.00011399 434.2502239245829 35.244 0.25304 35.244 35.053 35.306 0 14 12 2 0 0 0 0.17275 1 18570 18570 21.747 0 1 1564200 + 44482 26114 29445 30183 52441 52441 0.04758399868762808 PASATVPLV 9 Unmodified _PASATVPLV_ 0 0 0 REV__ENSG00000169116|ENST00000307428|PARM1 REV__ENSG00000169116|ENST00000307428|PARM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7539367675781 2 427.752736 853.490919 NaN NaN NaN NaN NaN NaN NaN 61.984 1 61.984 61.484 62.484 0 0 0 0 0.84564 1 34562 34562 2.0598 1.2661 1 + 44483 22376 29446 30184 52442 52442 0.05831284011514981 PASAWHPL 8 Unmodified _PASAWHPL_ 0 0 0 ENST00000525846.6_1_16:18445417-18445698:-|nuORF ENST00000525846.6_1_16:18445417-18445698:-|nuORF ENST00000525846.6_1_16:18445417-18445698:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7292175292969 2 439.729595 877.444637 0.53444 0.00023501 -0.33227 -0.00014611 0.20217 8.8899E-05 439.72936764283617 59.56 0.26819 59.507 59.346 59.614 -0.053059 23 13 2 0 0 0 0.50586 1 32439 32439 34.187 34.187 1 6315300 44484 14804 29447 30185 52443 52443 0.0010126390006917063 PASAWHPL 8 Unmodified _PASAWHPL_ 0 0 0 ENST00000525846.6_1_16:18445417-18445698:-|nuORF ENST00000525846.6_1_16:18445417-18445698:-|nuORF ENST00000525846.6_1_16:18445417-18445698:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 439.729595 877.444637 0.18049 7.9368E-05 -0.36328 -0.00015974 -0.18278 -8.0375E-05 439.72934350163194 59.94 0.33466 59.449 59.272 59.607 -0.49079 -0.028827 -1.5041E-05 NaN 34.187 36 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5697600 44485 14804 29447 30185 0.0010126390006917063 PASCHVPD 8 Unmodified _PASCHVPD_ 0 0 0 ENST00000526924.5_1_17:42826725-42827022:+|nuORF ENST00000526924.5_1_17:42826725-42827022:+|nuORF ENST00000526924.5_1_17:42826725-42827022:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.8662414550781 2 413.18162 824.348688 NaN NaN NaN NaN NaN NaN NaN 58.745 1 52.67 52.17 53.17 -6.0745 0 0 0 0.95973 1 37661 37661 8.5933 2.8329 1 44486 14825 29448 30186 52444 52444 -0.07051252002315778 PASDPAPLL 9 Unmodified _PASDPAPLL_ 0 0 0 REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7426147460938 2 440.742368 879.470183 0.27772 0.0001224 0.35216 0.00015521 0.62988 0.00027761 440.7427034365168 56.73 0.45188 56.73 56.495 56.947 0 30 19 2 0 0 0 0.026094 1 31531 31531 57.471 15.377 1 2343200 + 44487 29012 29449 30187 52445 52445 0.025626936318417393 PASDPAPLL 9 Unmodified _PASDPAPLL_ 0 0 0 REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7614135742188 2 440.742368 879.470183 0.27772 0.0001224 0.35216 0.00015521 0.62988 0.00027761 440.7427034365168 56.73 0.45188 56.73 56.495 56.947 0 30 19 2 0 0 0 0.21473 1 31457 31457 1.8442 0 1 2343200 + 44488 29012 29449 30187 52446 52446 0.025626936318417393 PASFTKNY 8 Unmodified _PASFTKNY_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-3|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2315063476562 2 464.232168 926.449782 0.77598 0.00036024 -4.0638 -0.0018866 -3.2878 -0.0015263 464.23063645560757 39.176 0.32909 39.176 39.012 39.341 0 21 15 2 0 0 0 0.80044 1 21022 21022 6.3541 0.59368 1 1158600 44489 5661 29450 30188 52447 52447 -0.016384770279501026 PASGPSLLVL 10 Unmodified _PASGPSLLVL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2872314453125 2 477.286943 952.559333 0.53544 0.00025556 -0.052264 -2.4945E-05 0.48317 0.00023061 477.28682493681066 70.901 0.43356 70.424 70.225 70.659 -0.47735 46 19 3 0 0 0 0.1028 1 38841 38841 46.021 4.1813 1 7896700 44490 7487 29451 30189 52448 52448 0.08115528591372367 PASGPSLLVL 10 Unmodified _PASGPSLLVL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2877502441406 2 477.286943 952.559333 0.80779 0.00038555 -0.15207 -7.258E-05 0.65572 0.00031297 477.28688654115314 77.992 0.55944 71.816 71.498 72.058 -6.1757 53 31 2 0 0 0 0.1028 1 50964 50964 46.021 6.0713 1 37739000 44491 7487 29451 30189 52449 52449 0.08115528591372367 PASGPSLLVL 10 Unmodified _PASGPSLLVL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 477.286943 952.559333 0.048744 2.3265E-05 0.89925 0.0004292 0.948 0.00045247 477.28742676009153 70.431 0.23813 70.431 70.28 70.518 0 -0.0026802 0.00070794 NaN 46.021 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 278540 44492 7487 29451 30189 0.08115528591372367 PASGPSLLVL 10 Unmodified _PASGPSLLVL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 477.286943 952.559333 0.6965 0.00033243 0.27115 0.00012942 0.96765 0.00046185 477.28700433801754 70.412 0.25565 70.447 70.336 70.592 0.035507 0.012953 0.00010837 NaN 46.021 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1279400 44493 7487 29451 30189 0.08115528591372367 PASGQIALL 9 Unmodified _PASGQIALL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 869.5087890625 1 869.509094 868.501818 -0.36941 -0.00032121 -0.40087 -0.00034856 -0.77028 -0.00066976 869.5084293101168 57.072 0.30279 56.587 56.369 56.672 -0.48554 24 13 2 0 0 0 0.094149 1 30934 30934 34.402 5.3201 1 3235000 44494 8779 29452 30190 52450 52450 0.062306863857997996 PASGQIALL 9 Unmodified _PASGQIALL_ 0 0 0 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 ENSG00000178896|ENST00000316052|EXOSC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.5110473632812 1 869.509094 868.501818 1.3206 0.0011483 -1.2699 -0.0011042 0.050704 4.4087E-05 869.5077604535489 64.233 0.39932 58.057 57.899 58.298 -6.1757 35 20 2 0 0 0 0.0041763 2 41685 41549;41685 120.45 27.959 1 16128000 44495 8779 29452 30190 52451;52452 52452 0.062306863857997996 PASHLAPF 8 Unmodified _PASHLAPF_ 0 0 0 REV__ENST00000578749.5_2_17:27895268-27895505:+|nuORF REV__ENST00000578749.5_2_17:27895268-27895505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2235717773438 2 420.224146 838.433738 0.24797 0.0001042 0.23114 9.713E-05 0.47911 0.00020133 420.2240822414448 61.057 0.25899 61.014 60.845 61.104 -0.04351 20 12 2 0 0 0 0.35156 1 33309 33309 49.669 6.7009 1 4643300 + 44496 29046 29453 30191 52453 52453 0.00805861525805085 PASIARSSI 9 Unmodified _PASIARSSI_ 0 0 0 REV__ENST00000411573.6_1_17:45976849-45977116:-|nuORF REV__ENST00000411573.6_1_17:45976849-45977116:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2589416503906 2 451.258717 900.50288 1.0922 0.00049286 0.22167 0.00010003 1.3139 0.00059289 451.2587721400815 35.633 0.28313 31.44 31.301 31.584 -4.1928 28 17 2 0 0 0 0.025842 1 20715 20715 57.722 4.4053 1 6054500 + 44497 26712 29454 30192 52454 52454 0.048649007547169276 PASLAAHDF 9 Unmodified _PASLAAHDF_ 0 0 0 REV__ENST00000496498.1_1_9:139934226-139934605:-|nuORF REV__ENST00000496498.1_1_9:139934226-139934605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.730224609375 2 464.729792 927.445031 -0.0057147 -2.6558E-06 -0.6113 -0.00028409 -0.61701 -0.00028674 464.72960565684446 33.275 0.25599 33.275 33.109 33.365 0 19 12 2 0 0 0 0.39863 1 17419 17419 12.532 0 1 1776100 + 44498 18557 29455 30193 52455 52455 -0.02159361170720331 PASLSPVSI 9 Unmodified _PASLSPVSI_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7496032714844 2 435.750193 869.485833 -0.32455 -0.00014142 -0.35959 -0.00015669 -0.68414 -0.00029811 435.7499668857825 55.265 0.38433 55.265 55.077 55.461 0 30 16 2 0 0 0 0.0086179 1 30672 30672 89.427 0 1 7924800 + 44499 29496 29456 30194 52456 52456 0.0458698014890615 PASLSPVSI 9 Unmodified _PASLSPVSI_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7496948242188 2 435.750193 869.485833 -0.073428 -3.1996E-05 -0.12885 -5.6145E-05 -0.20227 -8.8141E-05 435.75002836215725 55.812 0.38599 55.334 55.152 55.538 -0.47798 48 18 3 0 0 0 0.013472 1 30344 30344 70.716 0 1 15860000 + 44500 29496 29456 30194 52457 52457 0.0458698014890615 PASPCGPA 8 Unmodified _PASPCGPA_ 0 0 0 REV__ENST00000531455.5_1_1:155026659-155026806:+|nuORF REV__ENST00000531455.5_1_1:155026659-155026806:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1616516113281 2 350.160157 698.30576 NaN NaN NaN NaN NaN NaN NaN 84.059 1 83.559 83.059 84.059 -0.49961 0 0 0 0.97444 1 46004 46004 2.8892 0 1 + 44501 28446 29457 30195 52458 52458 -0.055460220597410625 PASPFPVVL 9 Unmodified _PASPFPVVL_ 0 0 0 REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7704772949219 2 463.770929 925.527304 NaN NaN NaN NaN NaN NaN NaN 54.616 1 54.15 53.65 54.65 -0.46664 0 0 0 0.43505 1 29602 29602 18.135 2.2878 1 + 44502 21491 29458 30196 52459 52459 0.06156160908221864 PASPHHFCLT 10 Unmodified _PASPHHFCLT_ 0 0 0 ENST00000078429.8_1_19:3122902-3123160:+|nuORF ENST00000078429.8_1_19:3122902-3123160:+|nuORF ENST00000078429.8_1_19:3122902-3123160:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2639770507812 2 555.263476 1108.5124 NaN NaN NaN NaN NaN NaN NaN 21.098 1 21.098 20.598 21.598 0 0 0 0 0.85122 1 10653 10653 10.074 0.52995 1 44503 10973 29459 30197 52460 52460 -0.03751654231427892 PASPLPEAL 9 Unmodified _PASPLPEAL_ 0 0 0 KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.A2491Gfs*15|1|0.21|ENSG00000167548|chr12:49040298-49040299|-/C|frameshift_variant;KMT2D|p.L2594Pfs*61|1|0.12|ENSG00000167548|chr12:49039989-49039990|-/G|frameshift_variant KMT2D|p.E517Sfs*413|1|0.5|ENSG00000167548|chr12:49052134-49052134|C/-|frameshift_variant;ENSG00000167548|ENST00000301067|KMT2D ENSG00000167548|ENST00000301067|KMT2D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2282409667969 2 447.750193 893.485833 -0.408 -0.00018268 2.8307 0.0012675 2.4227 0.0010848 447.7512835152369 27.694 0.18768 27.694 27.574 27.761 0 19 8 3 0 0 0 0.20528 1 14220 14220 0.52476 0 1 1906800 44504 7628;15941 29460 30198 52461 52461 0.03482980148908155 PASPLSSRQSF 11 Unmodified _PASPLSSRQSF_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8074340820312 2 588.80402 1175.59349 0.36624 0.00021564 -0.3699 -0.0002178 -0.00366 -2.155E-06 588.8045872410605 63.758 0.38122 63.272 63.016 63.397 -0.48617 29 18 2 0 0 0 0.56638 1 34799 34799 13.042 3.6593 1 2517300 44505 9930 29461 30199 52462 52462 0.012713250123169928 PASPLWPYCI 10 Unmodified _PASPLWPYCI_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8592834472656 3 382.859927 1145.55795 -0.39233 -0.00015021 -0.50339 -0.00019273 -0.89572 -0.00034294 382.85971771520946 29.171 0.22201 29.171 29.063 29.285 0 19 10 2 0 0 0 0.68719 1 15106 15106 2.086 0.34373 1 1644500 + 44506 18580 29462 30200 52463 52463 -0.009004287690459023 PASPVTEPARL 11 Unmodified _PASPVTEPARL_ 0 0 0 REV__ENSG00000047936|ENST00000368507|ROS1 REV__ENSG00000047936|ENST00000368507|ROS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8807067871094 3 379.880267 1136.61897 1.6827 0.00063923 -0.020896 -7.938E-06 1.6618 0.00063129 379.8801975025028 37.208 0.78046 32.924 32.557 33.338 -4.2835 170 47 5 0 0 0 0.33405 2 21802 21802;21926 19.987 7.1309 1 1655199999.9999998 + 44507 17236 29463 30201 52464;52465 52464 0.056127995347424076 PASRPRLLP 9 Unmodified _PASRPRLLP_ 0 0 0 ENST00000078527.8_1_1:27114536-27117254:+|nuORF ENST00000078527.8_1_1:27114536-27117254:+|nuORF ENST00000078527.8_1_1:27114536-27117254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.8119201660156 2 503.811451 1005.60835 0.39439 0.0001987 0.51633 0.00026013 0.91072 0.00045883 503.8115857491866 39.761 0.44131 39.766 39.585 40.026 0.0050545 34 20 2 0 0 0 0.2143 1 21212 21212 21.747 0 1 1390800 44508 10974 29464 30202 52466 52466 0.10576861670995186 PASRRLSAP 9 Unmodified _PASRRLSAP_ 0 0 0 nc|ENSG00000204352|Q5T035|FAM120A2P nc|ENSG00000204352|Q5T035|FAM120A2P nc|ENSG00000204352|Q5T035|FAM120A2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7774963378906 2 477.777608 953.540663 -0.13048 -6.234E-05 0.12409 5.9288E-05 -0.0063874 -3.0517E-06 477.7776358562407 23.396 0.14293 23.396 23.347 23.489 0 8 6 2 0 0 0 0.55144 1 11945 11945 4.3292 0 1 405910 44509 16505 29465 30203 52467 52467 0.062034117401822186 PASSAYALSPF 11 Unmodified _PASSAYALSPF_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.777099609375 2 555.776939 1109.53933 1.019 0.00056636 -2.6366 -0.0014654 -1.6176 -0.00089901 555.7745959093818 72.379 0.5015 66.203 66.002 66.504 -6.1757 34 25 2 0 0 0 0.35243 1 47411 47411 24.021 3.1494 1 18617000 44510 721 29466 30204 52468 52468 -0.011062671392664924 PASSFSSSGF 10 Unmodified _PASSFSSSGF_ 0 0 0 REV__nc|ENSG00000065883|Q14004-2|CDK13 REV__nc|ENSG00000065883|Q14004-2|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2161254882812 2 487.216714 972.418876 -0.26373 -0.00012849 0.58409 0.00028458 0.32036 0.00015608 487.2168640786069 20.635 0.3714 20.635 20.449 20.82 0 52 30 2 0 0 0 0.6606 1 10313 10313 7.2892 2.5332 1 978320 + 44511 17390 29467 30205 52469 52469 -0.06843675132836324 PASSLSVRL 9 Unmodified _PASSLSVRL_ 0 0 0 nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;ENST00000397030.5_1_13:113750822-113750996:+|nuORF;ENST00000488765.1_1_13:113750837-113751170:+|nuORF;ENST00000469415.1_1_13:113748772-113751170:+|nuORF nc|ENSG00000126217|O15068-6|MCF2L nc|ENSG00000126217|O15068-6|MCF2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2743225097656 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 46.425 1 46.391 45.891 46.891 -0.033417 0 0 0 0.6557 1 24976 24976 10.824 0 1 44512 3932 29468 30206 52470 52470 0.06705473788792915 PASSSTKLLMT 11 Unmodified _PASSSTKLLMT_ 0 0 0 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 ENSG00000102313|ENST00000218436|ITIH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3330688476562 2 568.305007 1134.59546 0.51105 0.00029043 -1.6891 -0.00095995 -1.1781 -0.00066951 568.3037371297149 50.979 0.25953 50.566 50.459 50.718 -0.41351 20 12 2 0 0 0 0.29923 1 27472 27472 7.609 0.88579 1 1716200 44513 2035 29469 30207 52471 52471 0.0335461770589518 PASTGAAWVS 10 Unmodified _PASTGAAWVS_ 0 0 0 REV__nc|ENSG00000100239|O75170-6|PPP6R2 REV__nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2471008300781 2 473.735074 945.455596 0.042926 2.0335E-05 -1.7132 -0.00081161 -1.6703 -0.00079128 473.7338877511254 28.818 0.18929 28.848 28.754 28.943 0.030104 14 7 2 0 0 0 0.22811 1 15065 15065 14.838 0 1 4911400 + 44514 18031 29470 30208 52472 52472 -0.019313785162921704 PASVAGDDSD 10 Unmodified _PASVAGDDSD_ 0 0 0 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 REV__nc|ENSG00000132773|Q96GM8-2|TOE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.1932373046875 2 467.193436 932.37232 0.31195 0.00014574 -0.57834 -0.0002702 -0.26639 -0.00012446 467.1930084740991 65.69 0.85511 59.515 59.11 59.965 -6.1757 122 49 3 0 0 0 0.6606 1 42468 42468 7.2892 7.2892 1 116380000 + 44515 19880 29471 30209 52473 52473 -0.09657159754806344 PASVAPRQPS 10 Unmodified _PASVAPRQPS_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2743835449219 2 505.274898 1008.53524 NaN NaN NaN NaN NaN NaN NaN 21.009 1 21.02 20.52 21.52 0.010553 0 0 0 0.97302 1 10735 10735 3.5965 0 1 + 44516 24425 29472 30210 52474 52474 0.031316881577026834 PASVLAPAL 9 Unmodified _PASVLAPAL_ 0 0 0 ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B MSMS AL20221201_MKP_PDAC_01 4 419.755859375 2 419.755278 837.496004 NaN NaN NaN NaN NaN NaN NaN 71.946 1 65.771 65.271 66.271 -6.1757 0 0 0 0.010816 1 47062 47062 106.85 0 1 44517 4216 29473 30211 52475 52475 0.07075587874123812 PASWRPVTL 9 Unmodified _PASWRPVTL_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.790771484375 2 513.790184 1025.56581 0.66332 0.00034081 0.55384 0.00028456 1.2172 0.00062537 513.7906332106937 40.533 0.20219 40.538 40.448 40.65 0.0050545 20 9 3 0 0 0 0.30562 1 21633 21633 16.942 6.1184 1 5239600 44518 7578 29474 30212 52476 52476 0.05405466542742943 PASWRPVTL 9 Unmodified _PASWRPVTL_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7894287109375 2 513.790184 1025.56581 0.31785 0.00016331 1.2683 0.00065166 1.5862 0.00081496 513.7906860950551 41.187 0.27066 41.185 41.008 41.279 -0.0017929 26 12 3 0 0 0 0.49272 1 21958 21958 7.9102 7.9102 1 6594900 44519 7578 29474 30212 52477 52477 0.05405466542742943 PASWRPVTL 9 Unmodified _PASWRPVTL_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.790184 1025.56581 0.084793 4.3566E-05 -1.1045 -0.00056749 -1.0197 -0.00052393 513.7897612193377 40.225 0.18523 40.225 40.11 40.295 0 -0.1566 -0.001159 NaN 16.942 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2528900 44520 7578 29474 30212 0.05405466542742943 PATDIYFFT 9 Unmodified _PATDIYFFT_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7615966796875 2 537.760758 1073.50696 0.17127 9.21E-05 0.87832 0.00047232 1.0496 0.00056443 537.7609102962499 85.528 0.70187 79.352 78.992 79.694 -6.1757 96 42 3 0 0 0 0.087258 1 56328 56328 36.044 0 1 81057000 44521 16461 29475 30213 52478 52478 -0.02685054542234866 PATFEPPNL 9 Unmodified _PATFEPPNL_ 0 0 0 REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2525329589844 2 493.2531 984.491647 0.88794 0.00043798 -0.23041 -0.00011365 0.65753 0.00032433 493.2529295810904 73.844 0.31862 73.368 73.252 73.57 -0.47588 38 15 3 0 0 0 0.2143 1 40411 40411 21.747 0 1 2259300 + 44522 26011 29476 30214 52479 52479 -0.0012192133942789951 PATHRKIF 8 Unmodified _PATHRKIF_ 0 0 0 REV__ENSG00000180008|ENST00000555846|SOCS4 REV__ENSG00000180008|ENST00000555846|SOCS4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2845153808594 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 20.841 1 20.852 20.352 21.352 0.010553 0 0 0 0.9706 1 10643 10643 6.3541 0 1 + 44523 23134 29477 30215 52480 52480 0.07004903608174118 PATHRKIF 8 Unmodified _PATHRKIF_ 0 0 0 REV__ENSG00000180008|ENST00000555846|SOCS4 REV__ENSG00000180008|ENST00000555846|SOCS4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2851257324219 2 485.285069 968.555585 NaN NaN NaN NaN NaN NaN NaN 21.12 1 21.13 20.63 21.63 0.010553 0 0 0 0.9706 1 10796 10796 6.3541 0 1 + 44524 23134 29477 30215 52481 52481 0.07004903608174118 PATILVHSPV 10 Unmodified _PATILVHSPV_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7847900390625 2 517.305667 1032.59678 0.085064 4.4004E-05 0.42198 0.00021829 0.50705 0.0002623 517.3057964303981 54.258 0.22013 54.191 54.041 54.262 -0.066936 15 10 2 0 0 0 0.22941 1 29491 29491 13.906 3.0821 1 1475000 + 44525 29707;21097 29478 30216 52482 52482 0.08178619856994374 PATLLNAF 8 Unmodified _PATLLNAF_ 0 0 0 ENSG00000243477|ENST00000443094|NAA80;nc|ENSG00000243477|Q93015-2|NAA80 ENSG00000243477|ENST00000443094|NAA80 ENSG00000243477|ENST00000443094|NAA80 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5426940917969 2 423.739628 845.464704 0.53909 0.00022843 -0.23375 -9.9048E-05 0.30534 0.00012939 423.73953198824233 67.627 0.4066 67.145 66.963 67.37 -0.48218 31 17 2 0 0 0 8.7369 1 37009 37009 24.674 1.5255 1 2375300 44526 10708 29479 30217 52483 52483 0.035790148400337785 PATPSRKRSV 10 Unmodified _PATPSRKRSV_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8848266601562 3 366.884123 1097.63054 0.087504 3.2104E-05 0.48587 0.00017826 0.57338 0.00021036 366.8840752099834 21.879 0.097366 21.892 21.821 21.919 0.013796 7 4 2 0 0 0 0.68074 1 11227 11227 5.0475 0.85802 1 612340 44527 4514 29480 30218 52484 52484 0.08563041348747902 PATPVSVPL 9 Unmodified _PATPVSVPL_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 880.5138549804688 1 880.513845 879.506569 -0.22613 -0.00019911 -0.35222 -0.00031014 -0.57835 -0.00050925 880.513417483329 56.328 0.38014 56.328 56.138 56.518 0 39 17 3 0 0 0 0.0021514 3 31366 31260;31321;31366 131.3 34.223 1 7642500 + 44528 23632 29481 30219 52485;52486;52487 52487 0.06199570528565346 PATPVSVPL 9 Unmodified _PATPVSVPL_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7610778808594 2 440.760561 879.506569 1.5493 0.00068285 -0.12295 -5.419E-05 1.4263 0.00062866 440.7604764069313 64.075 0.62547 57.899 57.595 58.221 -6.1757 96 33 4 0 0 0 0.010877 1 41448 41448 77.984 7.2688 1 148300000 + 44529 23632 29481 30219 52488 52488 0.06199570528565346 PATRASVRSL 10 Unmodified _PATRASVRSL_ 0 0 0 REV__nc|ENSG00000188162|Q6ZRI0|OTOG REV__nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3091430664062 2 529.309272 1056.60399 0.26441 0.00013996 -0.81514 -0.00043146 -0.55073 -0.00029151 529.3087018744186 24.308 0.36905 21.481 21.284 21.653 -2.8273 41 20 3 0 0 0 0.5905 1 13226 13226 11.64 0 1 14160000 + 44530 23694 29482 30220 52489 52489 0.07795352457424087 PATRATRP 8 Unmodified _PATRATRP_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2518310546875 2 435.251226 868.487899 0.36587 0.00015924 0.97224 0.00042317 1.3381 0.00058241 435.2515589287473 79.736 0.76324 79.791 79.284 80.047 0.05497 49 29 2 0 0 0 0.80143 1 43973 43973 5.7604 0 1 4579700 + 44531 17022 29483 30221 52490 52490 0.04839453677379879 PATREPLGGP 10 Unmodified _PATREPLGGP_ 0 0 0 ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF ENST00000542440.5_1_12:122268574-122269003:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7706909179688 2 497.769448 993.524344 NaN NaN NaN NaN NaN NaN NaN 25.668 1 25.695 25.195 26.195 0.026951 0 0 0 0.64375 1 13295 13295 19.257 2.3147 1 44532 15058 29484 30222 52491 52491 0.027322857834292336 PATRPRGV 8 Unmodified _PATRPRGV_ 0 0 0 ENST00000416281.6_1_11:67048455-67049666:+|nuORF ENST00000416281.6_1_11:67048455-67049666:+|nuORF ENST00000416281.6_1_11:67048455-67049666:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2539367675781 2 427.253769 852.492984 NaN NaN NaN NaN NaN NaN NaN 17.976 1 17.982 17.482 18.482 0.0060463 0 0 0 0.97444 1 9091 9091 2.8892 0 1 44533 13039 29485 30223 52492 52492 0.06083757540000079 PATRPWWRSG 10 Unmodified _PATRPWWRSG_ 0 0 0 REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2113647460938 3 405.212351 1212.61522 -0.54045 -0.000219 -1.1907 -0.00048251 -1.7312 -0.0007015 405.2117526927151 30.745 0.20241 30.745 30.65 30.852 0 15 9 2 0 0 0 0.69064 1 16028 16028 1.9064 0.45126 1 1377900 + 44534 25468 29486 30224 52493 52493 0.017421745515321163 PATRPWWRSG 10 Unmodified _PATRPWWRSG_ 0 0 0 REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF REV__ENST00000316097.12_1_19:1924366-1924684:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 405.212351 1212.61522 0.48671 0.00019722 -0.21814 -8.8394E-05 0.26857 0.00010883 405.54649346649256 30.723 0.16948 30.621 30.548 30.717 -0.10269 -0.062066 0.00075971 NaN 1.9064 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1658000 + 44535 25468 29486 30224 0.017421745515321163 PATRRVVL 8 Unmodified _PATRRVVL_ 0 0 0 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2933044433594 2 456.292894 910.571235 0.052778 2.4082E-05 0.045048 2.0555E-05 0.097826 4.4637E-05 456.2928105270996 31.898 0.30883 31.928 31.8 32.109 0.030106 20 13 2 0 0 0 0.55032 1 16775 16775 30.225 9.3536 1 3039600 44536 9602 29487 30225 52494 52494 0.11237190125223151 PATRRVVL 8 Unmodified _PATRRVVL_ 0 0 0 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000187840|ENST00000338825|EIF4EBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.293212890625 2 456.292894 910.571235 1.4297 0.00065237 -0.2476 -0.00011298 1.1821 0.00053939 456.29285136068 35.922 0.40212 31.729 31.512 31.914 -4.1928 55 25 3 0 0 0 0.28079 1 20854 20854 57.471 27.247 1 16466000 44537 9602 29487 30225 52495 52495 0.11237190125223151 PATVSYVPVP 10 Unmodified _PATVSYVPVP_ 0 0 0 ENST00000249364.8_1_7:128379460-128388729:+|nuORF ENST00000249364.8_1_7:128379460-128388729:+|nuORF ENST00000249364.8_1_7:128379460-128388729:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.28466796875 2 515.2844 1028.55425 NaN NaN NaN NaN NaN NaN NaN 18.128 1 15.507 15.007 16.007 -2.6215 0 0 0 0.83398 1 9530 9530 10.824 0 1 44538 11132 29488 30226 52496 52496 0.041112247287628634 PATWGPSVE 9 Unmodified _PATWGPSVE_ 0 0 0 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2305297851562 2 472.229625 942.444697 0.76992 0.00036358 0.81722 0.00038592 1.5871 0.00074949 472.22995920003467 47.975 0.40865 42.741 42.515 42.923 -5.2339 59 24 3 0 0 0 0.2143 1 29812 29812 21.747 3.6117 1 43669000 44539 4156 29489 30227 52497 52497 -0.028827808905589336 PATWLWWDGT 10 Unmodified _PATWLWWDGT_ 0 0 0 REV__ENST00000336761.10_1_19:1428908-1433813:+|nuORF REV__ENST00000336761.10_1_19:1428908-1433813:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.52978515625 3 411.529346 1231.56621 NaN NaN NaN NaN NaN NaN NaN 20.227 1 17.534 17.034 18.034 -2.693 0 0 0 0.91523 1 10766 10766 3.8763 1.2451 1 + 44540 25651 29490 30228 52498 52498 -0.0403115852807332 PATWPEDDIF 10 Unmodified _PATWPEDDIF_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7711181640625 2 595.771854 1189.52915 0.59591 0.00035503 -2.5172 -0.0014996 -1.9212 -0.0011446 595.7707525758908 83.764 0.14033 83.264 83.172 83.313 -0.49961 8 5 2 0 0 0 0.68719 1 45852 45852 4.3292 0.73274 1 509140 44541 2685;14783 29491 30229 52499 52499 -0.05802874864480145 PATWTLTI 8 Unmodified _PATWTLTI_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7518310546875 2 451.752736 901.490919 -0.17799 -8.0408E-05 -1.8166 -0.00082064 -1.9946 -0.00090104 451.7519057883567 56.892 0.27327 56.406 56.205 56.479 -0.48554 20 12 2 0 0 0 0.55032 1 30878 30878 30.225 2.596 1 2232200 + 44542 21759 29492 30230 52500 52500 0.03623284011530359 PATWTLTI 8 Unmodified _PATWTLTI_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 451.752736 901.490919 0.077294 3.4918E-05 -3.0911 -0.0013964 -3.0138 -0.0013615 451.75150751850936 56.298 0.31223 56.298 56.162 56.474 0 -0.054028 -0.00069065 NaN 30.225 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3192500 + 44543 21759 29492 30230 0.03623284011530359 PATWTLTI 8 Unmodified _PATWTLTI_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.752736 901.490919 -0.17799 -8.0408E-05 -1.8166 -0.00082064 -1.9946 -0.00090104 451.7519057883567 56.892 0.27327 56.406 56.205 56.479 -0.48554 0.054028 0.00046091 NaN 30.225 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2232200 + 44544 21759 29492 30230 0.03623284011530359 PATYDHYRF 9 Unmodified _PATYDHYRF_ 0 0 0 ENSG00000141579|ENST00000269394|ZNF750 ENSG00000141579|ENST00000269394|ZNF750 ENSG00000141579|ENST00000269394|ZNF750 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2741088867188 2 585.272355 1168.53016 -0.25455 -0.00014898 1.5404 0.00090153 1.2858 0.00075255 585.2733505236856 52.067 0.57429 52.067 51.802 52.376 0 82 25 4 0 0 0 0.58466 1 28957 28957 2.3027 0.24298 1 52539000 44545 5358 29493 30231 52501 52501 -0.047366157049282265 PAVEPLAVAY 10 Unmodified _PAVEPLAVAY_ 0 0 0 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2838745117188 2 515.2844 1028.55425 0.12599 6.4922E-05 0.65465 0.00033733 0.78065 0.00040226 515.2842210532262 72.004 0.35928 72.004 71.819 72.178 0 27 16 2 0 0 0 0.52888 1 40053 40053 14.838 0 1 1266100 + 44546 18482 29494 30232 52502 52502 0.04111224728740126 PAVEPLAVAY 10 Unmodified _PAVEPLAVAY_ 0 0 0 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 REV__nc|ENSG00000106009|Q6PJG6-3|BRAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2864379882812 2 515.2844 1028.55425 0.54554 0.00028111 -0.029448 -1.5174E-05 0.51609 0.00026593 515.2843437947743 72.449 0.39469 71.973 71.772 72.167 -0.47609 32 18 2 0 0 0 0.60623 1 39728 39728 10.824 0 1 3671400 + 44547 18482 29494 30232 52503 52503 0.04111224728740126 PAVGGQSNVSL 11 Unmodified _PAVGGQSNVSL_ 0 0 0 REV__nc|ENSG00000152767|Q9Y4F1-2|FARP1 REV__nc|ENSG00000152767|Q9Y4F1-2|FARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7719116210938 2 514.772188 1027.52982 0.41882 0.0002156 -0.01132 -5.8271E-06 0.4075 0.00020977 514.7722212204706 39.752 0.46931 35.301 34.98 35.449 -4.4509 53 29 2 0 0 0 0.017265 2 23523 23523;23653 60.074 3.5332 1 56169000 + 44548 21134 29495 30233 52504;52505 52504 0.017159645752371944 PAVHRHVL 8 Unmodified _PAVHRHVL_ 0 0 0 ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS ENSG00000100983|ENST00000651619|GSS MSMS AL20221201_MKP_PDAC_01 4 464.7781066894531 2 464.777411 927.540269 NaN NaN NaN NaN NaN NaN NaN 18.115 1 15.494 14.994 15.994 -2.6215 0 0 0 0.25888 1 9522 9522 70.716 38.599 1 44549 1898 29496 30234 52506 52506 0.07360036810973725 PAVIVPPV 8 Unmodified _PAVIVPPV_ 0 0 0 ENST00000438649.5_1_2:39811767-39811905:+|nuORF ENST00000438649.5_1_2:39811767-39811905:+|nuORF ENST00000438649.5_1_2:39811767-39811905:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2557983398438 2 396.254914 790.495276 1.312 0.00051989 -0.072524 -2.8738E-05 1.2395 0.00049116 396.2549349682113 100.4 0.11363 94.224 94.157 94.27 -6.1757 10 7 2 0 0 0 0.61999 1 67132 67132 24.21 0 1 13633000 44550 13365 29497 30235 52507 52507 0.09164793225079393 PAVKKMTFSE 10 Unmodified _PAVKKMTFSE_ 0 0 0 nc|ENSG00000248333|P21127-12|CDK11B;nc|ENSG00000248333|P21127-4|CDK11B;nc|ENSG00000248333|P21127-5|CDK11B;nc|ENSG00000248333|P21127-10|CDK11B;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000248333|P21127|CDK11B nc|ENSG00000248333|P21127-12|CDK11B nc|ENSG00000248333|P21127-12|CDK11B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8454895019531 3 379.870603 1136.58998 0.63714 0.00024203 3.414 0.0012969 4.0512 0.0015389 379.8721595062891 30.262 0.15009 30.181 30.105 30.255 -0.080429 7 5 2 0 0 0 0.23896 1 15662 15662 1.7423 0 1 502000 44551 10741 29498 30236 52508 52508 0.027149389141186475 PAVKTLVTL 9 Unmodified _PAVKTLVTL_ 0 0 0 ENSG00000067992|ENST00000379162|PDK3;nc|ENSG00000067992|Q15120-2|PDK3 ENSG00000067992|ENST00000379162|PDK3 ENSG00000067992|ENST00000379162|PDK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7881164550781 2 471.305136 940.595718 NaN NaN NaN NaN NaN NaN NaN 54.929 1 54.929 54.429 55.429 0 0 0 0 0.57317 1 30505 30505 13.508 4.1604 1 44552 968 29499 30237 52509 52509 0.12304405488100656 PAVKWQLNL 9 Unmodified _PAVKWQLNL_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.1982727050781 3 356.878198 1067.61277 1.9112 0.00068206 -0.6195 -0.00022108 1.2917 0.00046098 356.87831114344857 37.559 0.41785 33.275 33.087 33.505 -4.2835 52 24 3 0 0 0 0.20728 1 22156 22156 8.7454 6.0102 1 12534000 44553 10169 29500 30238 52510 52510 0.08166326093896714 PAVLLHTAF 9 Unmodified _PAVLLHTAF_ 0 0 0 ENST00000428443.7_1_2:179967411-179967483:-|nuORF ENST00000428443.7_1_2:179967411-179967483:-|nuORF ENST00000428443.7_1_2:179967411-179967483:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7818298339844 2 484.781828 967.549102 0.41427 0.00020083 0.4388 0.00021272 0.85308 0.00041356 484.78191376365044 54.673 0.20061 54.606 54.504 54.704 -0.066936 16 9 2 0 0 0 0.46577 1 29716 29716 9.3474 0 1 1825500 44554 13211 29501 30239 52511 52511 0.06402965656786819 PAVLVLKKIA 10 Unmodified _PAVLVLKKIA_ 0 0 0 ENST00000531806.5_1_11:67560432-67560600:-|nuORF ENST00000531806.5_1_11:67560432-67560600:-|nuORF ENST00000531806.5_1_11:67560432-67560600:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.0654296875 1 1051.72378 1050.7165 0.5378 0.00056561 0.78239 0.00082285 1.3202 0.0013885 1051.7245411812096 47.029 0.13318 46.692 46.642 46.775 -0.33664 9 6 2 0 0 0 0.24007 1 25179 25179 0.45834 0 1 4848200 44555 14914 29502 30240 52512 52512 0.19317233201559247 PAVNTPGYL 9 Unmodified _PAVNTPGYL_ 0 0 0 REV__ENSG00000178773|ENST00000319518|CPNE7 REV__ENSG00000178773|ENST00000319518|CPNE7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7393798828125 2 466.247818 930.481082 1.3806 0.00064371 -1.6007 -0.00074634 -0.22012 -0.00010263 466.24774826885255 64.131 0.86505 57.955 57.45 58.315 -6.1757 95 46 3 0 0 0 0.3554 1 41241 41241 14.582 1.0738 1 88125000 + 44556 23065 29503 30241 52513 52513 0.013060960061352489 PAVPGLRN 8 Unmodified _PAVPGLRN_ 0 0 0 ENST00000434640.5_2_6:3118630-3119634:+|nuORF ENST00000434640.5_2_6:3118630-3119634:+|nuORF ENST00000434640.5_2_6:3118630-3119634:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.4813232421875 1 823.478463 822.471186 1.5942 0.0013128 1.5545 0.0012801 3.1487 0.0025929 823.4800740660294 102.93 0.062683 96.759 96.733 96.796 -6.1757 20 16 2 0 0 0 0.80676 1 69042 69042 2.5775 0 1 3103200 44557 13302 29504 30242 52514 52514 0.05284952791419073 PAVPSIDEIC 10 Unmodified _PAVPSIDEIC_ 0 0 0 REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF REV__ENST00000493195.5_1_1:159897137-159898861:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2582397460938 2 522.257525 1042.5005 -0.28431 -0.00014848 4.2945 0.0022428 4.0102 0.0020944 522.2592905841841 42.025 0.20079 41.719 41.597 41.798 -0.30682 14 9 2 0 0 0 0.50944 1 22315 22315 15.847 1.0089 1 7116900 + 44558 17753 29505 30243 52515 52515 -0.01905315765270643 PAVPWRGR 8 Unmodified _PAVPWRGR_ 0 0 0 REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7698974609375 2 469.769586 937.524619 NaN NaN NaN NaN NaN NaN NaN 86.927 1 86.424 85.924 86.924 -0.50318 0 0 0 0.95607 1 47558 47558 9.3474 2.6243 1 + 44559 27629 29506 30244 52516 52516 0.0533575029394342 PAVQLEPMA 9 Unmodified _PAVQLEPMA_ 0 0 0 nc|ENSG00000160953|Q2TAK8-2|PWWP3A;ENST00000587460.5_1_19:1358605-1376572:+|nuORF;ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A;ENST00000591433.5_1_19:1358605-1371443:+|nuORF nc|ENSG00000160953|Q2TAK8-2|PWWP3A nc|ENSG00000160953|Q2TAK8-2|PWWP3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.752197265625 2 478.249503 954.484453 0.19288 9.2244E-05 3.2566 0.0015575 3.4495 0.0016497 478.25134681843866 38.685 0.46228 38.697 38.559 39.021 0.011456 33 22 2 0 0 0 0.21242 1 20702 20702 5.2307 0.47466 1 2350000 44560 6771 29507 30245 52517 52517 0.005390227884845444 PAVSENNRVL 10 Unmodified _PAVSENNRVL_ 0 0 0 ENST00000478653.6_1_1:21771676-21780057:+|nuORF ENST00000478653.6_1_1:21771676-21780057:+|nuORF ENST00000478653.6_1_1:21771676-21780057:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.29931640625 2 549.798737 1097.58292 0.3154 0.0001734 2.2644 0.001245 2.5798 0.0014184 549.8009306622268 38.578 0.53144 34.209 33.964 34.495 -4.3689 86 33 3 0 0 0 0.67033 1 22954 22954 6.2058 0 1 75645000 44561 14024 29508 30246 52518 52518 0.03803342357900874 PAVTAGLK 8 Unmodified _PAVTAGLK_ 0 0 0 ENSG00000102524|ENST00000375887|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B;nc|ENSG00000102524|Q9Y275-3|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7358093261719 2 378.734346 755.454139 NaN NaN NaN NaN NaN NaN NaN 55.261 1 55.192 54.692 55.692 -0.068737 0 0 0 0.97444 1 30027 30027 0.79363 0 1 44562 2048 29509 30247 52519 52519 0.06663032185622342 PAVYNAPFL 9 Unmodified _PAVYNAPFL_ 0 0 0 REV__nc|ENSG00000100351|O75791-2|GRAP2 REV__nc|ENSG00000100351|O75791-2|GRAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2636413574219 2 496.26601 990.517468 NaN NaN NaN NaN NaN NaN NaN 34.832 1 34.832 34.332 35.332 0 0 0 0 0.33856 1 18381 18381 23.148 0 1 + 44563 18049 29510 30248 52520 52520 0.02182972902835445 PAWCCAFL 8 Unmodified _PAWCCAFL_ 0 0 0 REV__nc|ENSG00000162706|Q8N126-2|CADM3 REV__nc|ENSG00000162706|Q8N126-2|CADM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.39501953125 1 910.394992 909.387716 -0.041564 -3.7839E-05 -0.4651 -0.00042343 -0.50666 -0.00046127 910.3944113384762 65.253 0.27608 65.253 65.143 65.419 0 19 10 2 0 0 0 0.80624 1 36488 36488 2.8892 0.31174 1 870160 + 44564 21680 29511 30249 52521 52521 -0.07060242972306696 PAWCWAYSF 9 Unmodified _PAWCWAYSF_ 0 0 0 ENST00000585839.5_1_19:14580313-14582593:+|nuORF ENST00000585839.5_1_19:14580313-14582593:+|nuORF ENST00000585839.5_1_19:14580313-14582593:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.742919921875 2 565.741845 1129.46914 NaN NaN NaN NaN NaN NaN NaN 70.916 1 70.916 70.416 71.416 0 0 0 0 0.7243 1 39511 39511 8.5933 0.68312 1 44565 15615 29512 30250 52522 52522 -0.09041844008720545 PAWFAAILHKT 11 Unmodified _PAWFAAILHKT_ 0 0 0 REV__ENSG00000185156|ENST00000329805|MFSD6L REV__ENSG00000185156|ENST00000329805|MFSD6L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.0441589355469 3 418.904636 1253.69208 0.46345 0.00019414 0.74228 0.00031095 1.2057 0.00050509 418.90459038479315 23.42 0.069736 20.641 20.611 20.681 -2.7784 5 3 2 0 0 0 0.29905 1 12680 12680 8.4443 0 1 1405000 + 44566 23478 29513 30251 52523 52523 0.07537973048010826 PAWWDVTL 8 Unmodified _PAWWDVTL_ 0 0 0 REV__ENST00000288943.4_1_2:96809359-96809716:-|nuORF REV__ENST00000288943.4_1_2:96809359-96809716:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2504272460938 2 494.25036 986.486168 0.89575 0.00044272 -0.43231 -0.00021367 0.46343 0.00022905 494.2500483288347 66.81 0.70284 66.828 66.654 67.357 0.018028 50 34 2 0 0 0 0.71616 1 36639 36639 15.768 0 1 5150300 + 44567 25233 29514 30252 52524 52524 -0.007616001312385379 PAWWWRPWWSR 11 Unmodified _PAWWWRPWWSR_ 0 0 0 REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF REV__ENST00000355943.7_1_5:110074744-110074849:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4012451171875 2 807.399287 1612.78402 NaN NaN NaN NaN NaN NaN NaN 95.909 1 95.913 95.413 96.413 0.004158 0 0 0 0.94313 1 53278 53278 0.26902 0.26902 1 + 44568 25819 29515 30253 52525 52525 0.002140761850569106 PAYDDLVSSRN 11 Unmodified _PAYDDLVSSRN_ 0 0 0 REV__nc|ENSG00000163714|O15042-2|U2SURP REV__nc|ENSG00000163714|O15042-2|U2SURP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.2809448242188 2 618.796392 1235.57823 0.077408 4.79E-05 2.8761 0.0017797 2.9535 0.0018276 618.7981916176313 54.598 0.27211 54.131 53.989 54.261 -0.46664 28 13 4 0 0 0 0.30049 1 29557 29557 6.2058 1.8765 1 3848700 + 44569 29744 29516 30254 52526 52526 -0.030135865755028135 PAYEPPAPAP 10 Unmodified _PAYEPPAPAP_ 0 0 0 nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3;ENST00000462151.5_1_1:155228612-155231516:-|nuORF;ENST00000465312.5_1_1:155227300-155231996:-|nuORF nc|ENSG00000116521|O14828-2|SCAMP3 nc|ENSG00000116521|O14828-2|SCAMP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2729187011719 2 505.2531 1008.49165 -0.11172 -5.6445E-05 -0.338 -0.00017077 -0.44971 -0.00022722 505.2528388830909 51.035 0.27962 50.622 50.479 50.758 -0.41351 22 13 2 0 0 0 0.22993 1 27428 27428 7.9102 7.9102 1 1322400 44570 3225 29517 30255 52527 52527 -0.012259213394372637 PAYEPPAPAP 10 Unmodified _PAYEPPAPAP_ 0 0 0 nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3;ENST00000462151.5_1_1:155228612-155231516:-|nuORF;ENST00000465312.5_1_1:155227300-155231996:-|nuORF nc|ENSG00000116521|O14828-2|SCAMP3 nc|ENSG00000116521|O14828-2|SCAMP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.2531 1008.49165 0.46191 0.00023338 2.898 0.0014642 3.3599 0.0016976 505.75574424828983 50.384 0.18774 50.384 50.331 50.518 0 -0.11859 0.0030763 NaN 7.9102 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2593000 44571 3225 29517 30255 -0.012259213394372637 PAYFEEVF 8 Unmodified _PAYFEEVF_ 0 0 0 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2348327636719 2 501.234376 1000.4542 0.18727 9.3868E-05 0.30303 0.00015189 0.4903 0.00024575 501.23440798849924 87.445 0.3929 86.941 86.708 87.101 -0.50423 40 16 3 0 0 0 0.80676 1 47773 47773 2.5775 0 1 1937200 44572 1596;2253;8839 29518 30256 52528 52528 -0.046010126050418876 PAYFGLAALL 10 Unmodified _PAYFGLAALL_ 0 0 0 nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1 nc|ENSG00000018280|P49279-2|SLC11A1 nc|ENSG00000018280|P49279-2|SLC11A1 MSMS AL20221201_MKP_PDAC_01 4 518.2952880859375 2 518.29731 1034.58007 NaN NaN NaN NaN NaN NaN NaN 56.889 1 50.913 50.413 51.413 -5.9769 0 0 0 0.6668 1 36343 36343 18.135 2.3668 1 44573 508 29519 30257 52529 52529 0.06416118971060314 PAYHVDLRL 9 Unmodified _PAYHVDLRL_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3006591796875 2 542.300916 1082.58728 NaN NaN NaN NaN NaN NaN NaN 16.519 1 16.52 16.02 17.02 0.0010548 0 0 0 0.85737 1 8150 8150 0.6015 0 1 + 44574 21592 29520 30258 52530 52530 0.04928851571457926 PAYIEELKS 9 Unmodified _PAYIEELKS_ 0 0 0 REV__ENSG00000175305|ENST00000308108|CCNE2 REV__ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2849731445312 2 525.279315 1048.54408 1.1974 0.00062898 0.2695 0.00014156 1.4669 0.00077055 525.2795085698897 55.382 0.89034 49.461 49.003 49.893 -5.9211 122 54 3 0 0 0 0.25681 1 35019 35019 19.257 3.4098 1 289300000 + 44575 22862 29521 30259 52531 52531 0.021746170035157775 PAYILNDLYI 10 Unmodified _PAYILNDLYI_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1;nc|ENSG00000144736|Q6PI26-2|SHQ1;ENST00000437111.1_1_10:52389508-52390123:-|nuORF ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.823974609375 2 597.823889 1193.63323 0.42937 0.00025669 -0.81506 -0.00048726 -0.38569 -0.00023057 597.8233972149968 70.818 0.25722 70.341 70.202 70.459 -0.47735 21 11 2 0 0 0 0.50944 1 38720 38720 15.847 2.8047 1 2277300 44576 5638 29522 30260 52532 52532 0.04415451963063788 PAYPKNVKM 9 Unmodified _PAYPKNVKM_ 0 0 0 ENST00000546954.1_1_12:120881792-120882053:-|nuORF ENST00000546954.1_1_12:120881792-120882053:-|nuORF ENST00000546954.1_1_12:120881792-120882053:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2888793945312 2 524.28642 1046.55829 0.98784 0.00051791 0.19967 0.00010468 1.1875 0.0006226 524.287274144889 59.812 0.54918 53.698 53.515 54.064 -6.1147 76 30 4 0 0 0 0.25297 1 38554 38554 19.439 2.3524 1 55673000 44577 15114 29523 30261 52533 52533 0.03686990950814106 PAYYDTRI 8 Unmodified _PAYYDTRI_ 0 0 0 ENSG00000151687|ENST00000684021|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR ENSG00000151687|ENST00000684021|ANKAR ENSG00000151687|ENST00000684021|ANKAR MSMS AL20221201_MKP_PDAC_01 4 499.7462768554688 2 499.750724 997.486896 NaN NaN NaN NaN NaN NaN NaN 39.869 1 35.34 34.84 35.84 -4.5294 0 0 0 0.69365 1 23725 23725 28.487 8.0332 1 44578 6135 29524 30262 52534 52534 -0.011948054821914411 PAYYPYGQF 9 Unmodified _PAYYPYGQF_ 0 0 0 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1729736328125 3 369.171159 1104.49165 1.1798 0.00043556 1.8346 0.00067728 3.0145 0.0011128 369.1717415606158 33.034 0.42362 29.178 28.989 29.413 -3.8562 49 26 2 0 0 0 0.48152 1 18863 18863 5.2969 2.4536 1 43023000 44579 8002 29525 30263 52535 52535 -0.056419213394292456 PAYYPYGQF 9 Unmodified _PAYYPYGQF_ 0 0 0 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 ENSG00000170549|ENST00000302006|IRX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.171159 1104.49165 0.62194 0.0002296 2.5134 0.00092788 3.1353 0.0011575 369.17204227324726 29.437 0.2677 29.356 29.258 29.525 -0.080431 0.0084781 0.00051516 NaN 5.2969 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 24049000 44580 8002 29525 30263 -0.056419213394292456 PCAGSVNLRDN 11 Unmodified _PCAGSVNLRDN_ 0 0 0 ENST00000343325.8_1_19:12721805-12734527:+|nuORF;ENST00000597691.5_1_19:12721808-12723065:+|nuORF ENST00000343325.8_1_19:12721805-12734527:+|nuORF ENST00000343325.8_1_19:12721805-12734527:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7754516601562 2 573.272029 1144.52951 -0.054449 -3.1214E-05 2.0275 0.0011623 1.9731 0.0011311 573.2734050775991 45.044 0.36803 45.022 44.718 45.086 -0.022064 32 18 2 0 0 0 0.5229 2 24051 24051;24153 15.248 5.1746 1 29679000 44581 12000 29526 30264 52536;52537 52536 -0.03697778416244546 PCALQWAL 8 Unmodified _PCALQWAL_ 0 0 0 ENSG00000124602|ENST00000244565|UNC5CL ENSG00000124602|ENST00000244565|UNC5CL ENSG00000124602|ENST00000244565|UNC5CL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 450.7758483886719 2 451.233656 900.452759 1.1176 0.00050432 -1.9637 -0.0008861 -0.84609 -0.00038179 451.23291352342915 30.387 0.29282 26.89 26.736 27.029 -3.497 22 14 2 0 0 0 8.7369 1 17196 17196 18.135 9.5417 1 9808900 44582 3805 29527 30265 52538 52538 -0.0014492517479993694 PCCCCCGCPDR 11 Unmodified _PCCCCCGCPDR_ 0 0 0 ENSG00000183307|ENST00000331437|TMEM121B ENSG00000183307|ENST00000331437|TMEM121B ENSG00000183307|ENST00000331437|TMEM121B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1141662597656 3 387.114182 1158.32072 NaN NaN NaN NaN NaN NaN NaN 54.835 1 54.835 54.335 55.335 0 0 0 0 0.9434 1 30452 30452 0.073264 0 1 44583 9133 29528 30266 52539 52539 -0.2521104890388415 PCCSYCSTAY 10 Unmodified _PCCSYCSTAY_ 0 0 0 REV__ENSG00000068120|ENST00000393818|COASY REV__ENSG00000068120|ENST00000393818|COASY MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.169189453125 2 549.190471 1096.36639 0.40269 0.00022115 1.8623 0.0010228 2.265 0.0012439 549.1912114154068 38.496 0.38975 34.127 33.9 34.29 -4.3689 40 24 2 0 0 0 0.23862 1 22596 22596 3.9444 1.0552 1 16980000 + 44584 17432 29529 30267 52540 52540 -0.1779404085398255 PCEEFAWNF 9 Unmodified _PCEEFAWNF_ 0 0 0 REV__ENSG00000142512|ENST00000339313|SIGLEC10 REV__ENSG00000142512|ENST00000339313|SIGLEC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7362670898438 2 571.734217 1141.45388 0.25744 0.00014719 2.3626 0.0013508 2.62 0.001498 571.7355751493271 31.168 0.24585 31.168 31.051 31.296 0 16 11 2 0 0 0 0.48152 1 16249 16249 8.5933 2.8614 1 1399100 + 44585 20574 29530 30268 52541 52541 -0.11118755596567098 PCEVCEFCC 9 Unmodified _PCEVCEFCC_ 0 0 0 REV__ENSG00000036828|ENST00000639785|CASR REV__ENSG00000036828|ENST00000639785|CASR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.6682739257812 2 516.668317 1031.32208 NaN NaN NaN NaN NaN NaN NaN 0.37716 1 0.37716 -0.12284 0.87716 0 0 0 0 0.8622 1 188 188 0 0 1 + 44586 17170 29531 30269 52542 52542 -0.1923276827180871 PCEVCEFCC 9 Unmodified _PCEVCEFCC_ 0 0 0 REV__ENSG00000036828|ENST00000639785|CASR REV__ENSG00000036828|ENST00000639785|CASR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.6683959960938 2 516.668317 1031.32208 NaN NaN NaN NaN NaN NaN NaN 0.47384 1 0.39992 -0.10008 0.89992 -0.07392 0 0 0 0.8622 1 237 237 0 0 1 + 44587 17170 29531 30269 52543 52543 -0.1923276827180871 PCGLDSIH 8 Unmodified _PCGLDSIH_ 0 0 0 nc|ENSG00000278570|Q9Y5X4-2|NR2E3;ENSG00000278570|ENST00000617575|NR2E3 nc|ENSG00000278570|Q9Y5X4-2|NR2E3 nc|ENSG00000278570|Q9Y5X4-2|NR2E3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.1986694335938 2 421.19727 840.379988 1.3426 0.00056552 0.55872 0.00023533 1.9014 0.00080085 421.1975363140482 59.295 0.25795 53.22 53.1 53.358 -6.0745 23 14 2 0 0 0 0.1036 1 38074 38074 98.807 15.868 1 19496000 44588 10935 29532 30270 52544 52544 -0.046586789682237395 PCGQAPEPPL 10 Unmodified _PCGQAPEPPL_ 0 0 0 REV__ENST00000361509.7_1_1:159898784-159900045:-|nuORF REV__ENST00000361509.7_1_1:159898784-159900045:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2463684082031 2 504.744585 1007.47462 0.33992 0.00017158 0.52844 0.00026673 0.86837 0.0004383 504.7449205194919 45.337 0.23818 40.382 40.239 40.477 -4.9549 20 16 2 0 0 0 0.33553 1 27787 27787 25.399 4.9457 1 14468000 + 44589 25926 29533 30271 52545 52545 -0.028821652168971923 PCHCCHCCPC 10 Unmodified _PCHCCHCCPC_ 0 0 0 REV__ENSG00000197191|ENST00000650725|CYSRT1 REV__ENSG00000197191|ENST00000650725|CYSRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.1512451171875 2 553.151788 1104.28902 NaN NaN NaN NaN NaN NaN NaN 16.321 1 16.326 15.826 16.826 0.0050564 0 0 0 1.0061 1 8179 8179 0 0 1 + 44590 23906 29534 30272 52546 52546 -0.2589499686716863 PCHFYRWFHYF 11 Unmodified _PCHFYRWFHYF_ 0 0 0 REV__ENSG00000143786|ENST00000272133|CNIH3 REV__ENSG00000143786|ENST00000272133|CNIH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 801.859130859375 2 801.858606 1601.70266 NaN NaN NaN NaN NaN NaN NaN 55.676 1 55.607 55.107 56.107 -0.068737 0 0 0 0.9435 1 30263 30263 0 0 1 + 44591 20669 29535 30273 52547 52547 -0.07412367569190792 PCIHLFTCSF 10 Unmodified _PCIHLFTCSF_ 0 0 0 ENST00000271620.7_1_1:151007069-151007246:+|nuORF ENST00000271620.7_1_1:151007069-151007246:+|nuORF ENST00000271620.7_1_1:151007069-151007246:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2696533203125 2 584.269912 1166.52527 0.38563 0.00022531 0.15984 9.3389E-05 0.54547 0.0003187 584.2696712899241 78.523 1.0798 72.347 72.155 73.235 -6.1757 143 63 3 0 0 0 0.60623 1 51643 51643 10.824 0 1 58826000 44592 11367 29536 30274 52548 52548 -0.05132959163529449 PCPKGKPR 8 Unmodified _PCPKGKPR_ 0 0 0 REV__nc|ENSG845|O71037|ERVK-19_env;REV__nc|ENSG855|P10266|ERVK-10_pol REV__nc|ENSG855|P10266|ERVK-10_pol MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7517395019531 2 441.752547 881.490542 0.99444 0.0004393 -3.0142 -0.0013315 -2.0197 -0.00089221 441.7508708661492 56.975 0.13497 56.906 56.82 56.955 -0.068737 10 6 2 0 0 0 0.80676 1 30993 30993 2.5775 0.27475 1 2226000 + 44593 30044;30045 29537 30275 52549 52549 0.04505585810670709 PCPLLPMG 8 Unmodified _PCPLLPMG_ 0 0 0 REV__ENST00000486438.1_1_17:40123824-40125939:+|nuORF REV__ENST00000486438.1_1_17:40123824-40125939:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.2120361328125 2 414.211335 826.408117 NaN NaN NaN NaN NaN NaN NaN 17.04 1 14.453 13.953 14.953 -2.5866 0 0 0 0.97444 1 8876 8876 2.8892 0 1 + 44594 27806 29538 30276 52550 52550 -0.012030723124780707 PCPSWPGV 8 Unmodified _PCPSWPGV_ 0 0 0 REV__ENST00000250916.5_1_19:1853310-1853532:-|nuORF REV__ENST00000250916.5_1_19:1853310-1853532:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.699462890625 2 421.696906 841.37926 0.64949 0.00027389 1.2336 0.00052022 1.8831 0.00079411 421.6989549290168 68.005 0.38417 67.523 67.275 67.659 -0.48219 56 17 4 0 0 0 0.72953 1 37119 37119 14.582 1.0738 1 7069700 + 44595 24881 29539 30277 52551 52551 -0.047774736172641497 PCREERLLF 9 Unmodified _PCREERLLF_ 0 0 0 REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2054138183594 3 388.206098 1161.59646 NaN NaN NaN NaN NaN NaN NaN 17.617 1 17.631 17.131 18.131 0.013865 0 0 0 0.84564 1 8773 8773 1.0715 0.29493 1 + 44596 25055 29540 30278 52552 52552 0.022128768654965825 PCREERLLF 9 Unmodified _PCREERLLF_ 0 0 0 REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5401000976562 3 388.206098 1161.59646 -0.014147 -5.4921E-06 -1.4675 -0.00056969 -1.4816 -0.00057518 388.2057305760525 17.564 0.17422 17.569 17.447 17.621 0.0050564 28 15 2 0 0 0 0.54444 1 8835 8835 2.7352 0.82882 1 1969300 + 44597 25055 29540 30278 52553 52553 0.022128768654965825 PCREERLLF 9 Unmodified _PCREERLLF_ 0 0 0 REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF REV__ENST00000264025.7_1_11:119599202-119599379:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.206098 1161.59646 -0.014147 -5.4921E-06 -1.4675 -0.00056969 -1.4816 -0.00057518 388.2057305760525 17.564 0.17422 17.569 17.447 17.621 0.0050564 0 0 NaN 2.7352 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1969300 + 44598 25055 29540 30278 0.022128768654965825 PCRPSPIASYF 11 Unmodified _PCRPSPIASYF_ 0 0 0 REV__ENST00000374024.3_1_1:27721341-27721638:+|nuORF REV__ENST00000374024.3_1_1:27721341-27721638:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2076110839844 3 413.205986 1236.59613 -0.48073 -0.00019864 2.5952 0.0010724 2.1145 0.00087371 413.2072227932008 24.9 0.21922 24.9 24.697 24.916 0 15 10 2 0 0 0 0.71618 1 12734 12734 1.1098 0 1 913260 + 44599 26169 29541 30279 52554 52554 -0.012705428543995367 PCSLDVDQW 9 Unmodified _PCSLDVDQW_ 0 0 0 REV__ENST00000467138.1_1_9:133577015-133577135:+|nuORF REV__ENST00000467138.1_1_9:133577015-133577135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7319946289062 2 531.731674 1061.4488 0.28146 0.00014966 -1.9813 -0.0010535 -1.6998 -0.00090384 531.7305640355023 99.178 0.3068 98.985 98.752 99.059 -0.19321 24 10 4 0 0 0 0.23158 1 54158 54158 20.454 3.5113 1 5532900 + 44600 27425 29542 30280 52555 52555 -0.0794705945916121 PCSYPSDTYAA 11 Unmodified _PCSYPSDTYAA_ 0 0 0 REV__ENSG00000167604|ENST00000606253|NFKBID REV__ENSG00000167604|ENST00000606253|NFKBID MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2392578125 2 587.739696 1173.46484 -0.57628 -0.0003387 -0.5293 -0.00031109 -1.1056 -0.00064979 588.2401854550254 34.649 0.74458 34.649 34.175 34.919 0 93 38 4 0 0 0 0.65846 1 18278 18278 8.1555 0 1 4560900 + 44601 22225 29543 30281 52556 52556 -0.11495398012903024 PCTLGAGL 8 Unmodified _PCTLGAGL_ 0 0 0 ENST00000310032.12_1_5:176084838-176085024:+|nuORF ENST00000310032.12_1_5:176084838-176085024:+|nuORF ENST00000310032.12_1_5:176084838-176085024:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.1923522949219 2 366.191457 730.368361 NaN NaN NaN NaN NaN NaN NaN 21.712 1 18.977 18.477 19.477 -2.7348 0 0 0 0.95201 1 11647 11647 10.183 3.8293 1 44602 11672 29544 30282 52557 52557 -0.007608759915569863 PCVHNNDLY 9 Unmodified _PCVHNNDLY_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2;ENSG00000198788|ENST00000675028|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.737548828125 2 537.737291 1073.46003 NaN NaN NaN NaN NaN NaN NaN 62.729 1 62.729 62.229 63.229 0 0 0 0 0.71962 1 34993 34993 8.7454 0.83525 1 44603 16496 29545 30283 52558 52558 -0.0737623736504247 PCVNRWEKL 9 Unmodified _PCVNRWEKL_ 0 0 0 REV__ENST00000449486.1_1_7:154738353-154739642:+|nuORF REV__ENST00000449486.1_1_7:154738353-154739642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2021789550781 3 382.202576 1143.5859 0.61095 0.00023351 -1.4922 -0.00057031 -0.88123 -0.00033681 382.20209820215047 72.405 0.26844 71.929 71.752 72.02 -0.47609 29 12 4 0 0 0 0.57331 1 39616 39616 2.9952 0 1 2577700 + 44604 27188 29546 30284 52559 52559 0.019848942110456846 PCWWERRYKRR 11 Unmodified _PCWWERRYKRR_ 0 0 0 ENST00000492991.5_1_9:132595938-132597442:-|nuORF ENST00000492991.5_1_9:132595938-132597442:-|nuORF ENST00000492991.5_1_9:132595938-132597442:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.9522705078125 3 545.952766 1634.83647 NaN NaN NaN NaN NaN NaN NaN 20.75 1 20.75 20.25 21.25 0 0 0 0 0.9435 1 10456 10456 0 0 1 44605 14305 29547 30285 52560 52560 0.04444291256345423 PCYCHFFQQF 10 Unmodified _PCYCHFFQQF_ 0 0 0 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5165405273438 3 440.516055 1318.52633 0.49633 0.00021864 -0.0011799 -5.1977E-07 0.49515 0.00021812 440.51624590232313 26.356 0.16964 26.383 26.301 26.471 0.026953 9 7 2 0 0 0 0.71123 1 13692 13692 0.69767 0.19171 1 1521700 + 44606 19302 29548 30286 52561 52561 -0.12018744794636405 PCYCHFFQQF 10 Unmodified _PCYCHFFQQF_ 0 0 0 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 440.516055 1318.52633 -0.33971 -0.00014965 -1.4358 -0.00063248 -1.7755 -0.00078213 440.5159149340313 26.533 0.22965 26.533 26.428 26.658 0 0.074838 -0.00046037 NaN 0.69767 37 10 5 NaN NaN NaN NaN 0 NaN NaN 0 6801900 + 44607 19302 29548 30286 -0.12018744794636405 PCYVQEQHF 9 Unmodified _PCYVQEQHF_ 0 0 0 REV__nc|ENSG00000022267|Q13642-1|FHL1 REV__nc|ENSG00000022267|Q13642-1|FHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7515258789062 2 575.752941 1149.49133 0.53955 0.00031065 -0.22562 -0.0001299 0.31393 0.00018075 575.7524829654159 55.382 0.33672 54.904 54.733 55.069 -0.47798 31 15 3 0 0 0 0.43515 1 30016 30016 10.824 0.75 1 1890200 + 44608 17112 29549 30287 52562 52562 -0.07743664330928368 PCYVQEQHF 9 Unmodified _PCYVQEQHF_ 0 0 0 REV__nc|ENSG00000022267|Q13642-1|FHL1 REV__nc|ENSG00000022267|Q13642-1|FHL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1708679199219 3 384.171053 1149.49133 NaN NaN NaN NaN NaN NaN NaN 24.466 1 24.464 23.964 24.964 -0.0016766 0 0 0 0.83812 1 12503 12503 2.9952 0.26005 1 + 44609 17112 29549 30287 52563 52563 -0.07743664330928368 PDAFYPQHF 9 Unmodified _PDAFYPQHF_ 0 0 0 nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5502624511719 3 374.506541 1120.49779 -0.3208 -0.00012014 -1.3584 -0.00050875 -1.6793 -0.00062889 374.50621349383385 23.275 0.16325 23.275 23.163 23.326 0 18 7 3 0 0 0 0.21367 1 11838 11838 2.7352 0 1 1264800 44610 16634 29550 30288 52564 52564 -0.057634031079032866 PDAGPWGDYL 10 Unmodified _PDAGPWGDYL_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7453002929688 2 545.745639 1089.47673 0.5475 0.0002988 -0.17629 -9.6209E-05 0.37121 0.00020259 545.7455313659517 74.998 0.68877 74.521 74.256 74.945 -0.47713 86 31 3 0 0 0 0.67033 1 41173 41173 6.2058 0.44535 1 41715000 44611 4257 29551 30289 52565 52565 -0.06443413207421145 PDAIRLRF 8 Unmodified _PDAIRLRF_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2901306152344 2 494.290351 986.566149 0.78305 0.00038705 -0.68939 -0.00034076 0.093657 4.6294E-05 494.29011219726726 65.008 0.39922 65.008 64.78 65.18 7.6294E-06 35 19 2 0 0 0 0.21098 1 35610 35610 68.081 25.986 1 6133500 44612 2139 29552 30290 52566 52566 0.07232886262602278 PDALGLVEYL 10 Unmodified _PDALGLVEYL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2;ENST00000588824.1_1_18:12724471-12725527:+|nuORF ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.29541015625 2 545.294965 1088.57538 0.51073 0.0002785 -0.31375 -0.00017109 0.19699 0.00010742 545.2948587468154 81.675 0.39687 81.18 80.972 81.369 -0.4952 22 15 2 0 0 0 0.56348 1 44721 44721 13.042 0 1 1544700 44613 4089 29553 30291 52567 52567 0.0346319003760982 PDARRLPS 8 Unmodified _PDARRLPS_ 0 0 0 ENST00000378781.7_1_13:46952139-46961360:-|nuORF ENST00000378781.7_1_13:46952139-46961360:-|nuORF ENST00000378781.7_1_13:46952139-46961360:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.25634765625 2 456.256508 910.498464 NaN NaN NaN NaN NaN NaN NaN 20.148 1 17.492 16.992 17.992 -2.6564 0 0 0 0.97444 1 10719 10719 5.2307 0.47466 1 44614 12551 29554 30292 52568 52568 0.039634363317986754 PDASRGGCGVF 11 Unmodified _PDASRGGCGVF_ 0 0 0 REV__ENST00000568631.5_2_16:2317490-2317628:-|nuORF REV__ENST00000568631.5_2_16:2317490-2317628:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2449340820312 2 533.242741 1064.47093 0.44388 0.00023669 -0.85646 -0.0004567 -0.41258 -0.00022001 533.2433552803607 85.424 0.46259 84.922 84.791 85.253 -0.5015 111 40 3 0 0 0 0.65108 1 46704 46704 8.7454 2.3913 1 4943900 + 44615 28948 29555 30293 52569 52569 -0.05872834990714182 PDATQFIEY 9 Unmodified _PDATQFIEY_ 0 0 0 nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2540283203125 2 542.253297 1082.49204 0.79079 0.00042881 -0.39306 -0.00021314 0.39773 0.00021567 542.2529044547915 54.203 0.38431 54.203 53.991 54.375 0 49 17 4 0 0 0 0.41742 1 30130 30130 11.64 0.52583 1 15405000 44616 9878 29556 30294 52570 52570 -0.04590546410236129 PDAVLEVQTR 10 Unmodified _PDAVLEVQTR_ 0 0 0 REV__ENSG00000039650|ENST00000322344|PNKP REV__ENSG00000039650|ENST00000322344|PNKP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3069458007812 2 564.306395 1126.59824 -0.0985 -5.5584E-05 0.41261 0.00023284 0.31411 0.00017726 564.3066904043274 45.092 0.25369 45.092 44.976 45.23 0 29 12 3 0 0 0 0.14688 1 24541 24541 40.239 0 1 13455000 + 44617 17190 29557 30295 52571 52571 0.04000209155083212 PDAYFEFH 8 Unmodified _PDAYFEFH_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7274780273438 2 513.2218 1024.42905 0.54018 0.00027723 1.1727 0.00060185 1.7129 0.00087908 513.2219924043709 74.148 0.77239 74.148 73.638 74.41 0 53 34 2 0 0 0 0.80992 1 41075 41075 0.69038 0 1 3133200 + 44618 17772 29558 30296 52572 52572 -0.082190674076287 PDCEEEML 8 Unmodified _PDCEEEML_ 0 0 0 REV__ENST00000484738.1_1_1:244819598-244819724:+|nuORF REV__ENST00000484738.1_1_1:244819598-244819724:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.1845703125 2 483.183168 964.351784 NaN NaN NaN NaN NaN NaN NaN 66.156 1 65.673 65.173 66.173 -0.48323 0 0 0 0.97444 1 36117 36117 2.5775 1.0956 1 + 44619 27763 29559 30297 52573 52573 -0.13181789730469973 PDCHHLPS 8 Unmodified _PDCHHLPS_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1 ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.1999206542969 2 453.200344 904.386136 NaN NaN NaN NaN NaN NaN NaN 16.359 1 16.359 15.859 16.859 0 0 0 0 0.97444 1 7969 7969 0.69038 0.69038 1 44620 7898 29560 30298 52574 52574 -0.06988160736693771 PDDAEPAQTL 10 Unmodified _PDDAEPAQTL_ 0 0 0 REV__ENSG00000109089|ENST00000337231|CDR2L REV__ENSG00000109089|ENST00000337231|CDR2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7449951171875 2 528.745836 1055.47712 NaN NaN NaN NaN NaN NaN NaN 50.669 1 50.669 50.169 51.169 0 0 0 0 0.78298 1 27943 27943 13.042 0.51092 1 + 44621 18643 29561 30299 52575 52575 -0.04840038278234715 PDDCPLQDP 9 Unmodified _PDDCPLQDP_ 0 0 0 REV__nc|ENSG00000241350|Q13670|PMS2P11 REV__nc|ENSG00000241350|Q13670|PMS2P11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2095336914062 2 500.208032 998.401511 NaN NaN NaN NaN NaN NaN NaN 17.142 1 17.142 16.642 17.642 0 0 0 0 0.82739 1 8421 8421 4.3292 0 1 + 44622 29967 29562 30300 52576 52576 -0.09775338730173644 PDDDDDLMPI 10 Unmodified _PDDDDDLMPI_ 0 0 0 ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.238037109375 2 573.236987 1144.45942 NaN NaN NaN NaN NaN NaN NaN 34.062 1 34.062 33.562 34.562 0 0 0 0 0.85122 1 17915 17915 10.074 1.4806 1 44623 10893 29563 30301 52577 52577 -0.10703121595406628 PDDDDFDHY 9 Unmodified _PDDDDFDHY_ 0 0 0 REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3 REV__nc|ENSG00000011566|Q8IVH8-3|MAP4K3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.760986328125 2 569.701625 1137.3887 0.73336 0.0004178 -1.8203 -0.001037 -1.0869 -0.00061922 569.7009749403123 60.225 0.27768 60.225 60.023 60.301 0 17 11 2 0 0 0 0.21473 1 33569 33569 4.3292 0.38484 1 769840 + 44624 17061 29564 30302 52578 52578 -0.17450078588717588 PDDEGCFC 8 Unmodified _PDDEGCFC_ 0 0 0 REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.8552551269531 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 21.632 1 21.66 21.16 22.16 0.028357 0 0 0 0.97444 1 10984 10984 2.5775 0 1 + 44625 30059 29565 30303 52579 52579 -0.17870901107517057 PDDEGCFC 8 Unmodified _PDDEGCFC_ 0 0 0 REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant MSMS AL20221201_MKP_PDAC_01 4 443.142333984375 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 0.83653 1 -1.6454 -2.1454 -1.1454 -2.482 0 0 0 0.97444 1 440 440 0 0 1 + 44626 30059 29565 30303 52580 52580 -0.17870901107517057 PDDEGCFC 8 Unmodified _PDDEGCFC_ 0 0 0 REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant MSMS AL20221201_MKP_PDAC_01 4 443.1416931152344 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 2.1842 1 -0.29771 -0.79771 0.20229 -2.482 0 0 0 0.97444 1 1119 1119 0 0 1 + 44627 30059 29565 30303 52581 52581 -0.17870901107517057 PDDEGCFC 8 Unmodified _PDDEGCFC_ 0 0 0 REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant REV__NR0B1|p.H139D|1|0.22|ENSG00000169297|chrX:30308949-30308949|G/C|missense_variant MSMS AL20221201_MKP_PDAC_01 4 443.1415710449219 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 13.823 1 11.32 10.82 11.82 -2.5029 0 0 0 0.97444 1 7008 7008 0 0 1 + 44628 30059 29565 30303 52582 52582 -0.17870901107517057 PDDGQMSKDDF 11 Unmodified _PDDGQMSKDDF_ 0 0 0 REV__ENSG00000152591|ENST00000651931|DSPP REV__ENSG00000152591|ENST00000651931|DSPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7504272460938 2 627.750792 1253.48703 0.39612 0.00024867 -1.5368 -0.0009647 -1.1406 -0.00071603 627.7502315836645 52.208 0.33467 51.774 51.59 51.925 -0.43367 57 16 5 0 0 0 0.59689 1 28150 28150 11.495 2.7493 1 18263000 + 44629 21128 29566 30304 52583 52583 -0.12957218335168363 PDDGQMSKDDF 11 Unmodified _PDDGQMSKDDF_ 0 0 0 REV__ENSG00000152591|ENST00000651931|DSPP REV__ENSG00000152591|ENST00000651931|DSPP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.750792 1253.48703 0.39612 0.00024867 -1.5368 -0.0009647 -1.1406 -0.00071603 627.7502315836645 52.208 0.33467 51.774 51.59 51.925 -0.43367 -0.025381 -4.7573E-05 NaN 11.495 57 16 5 NaN NaN NaN NaN 0 NaN NaN 0 18263000 + 44630 21128 29566 30304 -0.12957218335168363 PDDGQMSKDDF 11 Unmodified _PDDGQMSKDDF_ 0 0 0 REV__ENSG00000152591|ENST00000651931|DSPP REV__ENSG00000152591|ENST00000651931|DSPP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 627.750792 1253.48703 0.33111 0.00020785 -1.3255 -0.00083207 -0.99437 -0.00062422 627.7499436609188 51.884 0.24681 51.825 51.67 51.917 -0.058918 0.025381 0.00021768 NaN 11.495 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1705700 + 44631 21128 29566 30304 -0.12957218335168363 PDDIAIIDV 9 Unmodified _PDDIAIIDV_ 0 0 0 REV__ENST00000449411.1_1_1:119977610-119977676:-|nuORF REV__ENST00000449411.1_1_1:119977610-119977676:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2596740722656 2 485.758215 969.501877 0.34958 0.00016981 -0.14834 -7.2058E-05 0.20124 9.7756E-05 485.7582270707536 69.206 0.44448 69.206 68.978 69.423 0 46 19 3 0 0 0 0.5029 1 38478 38478 7.2892 2.0586 1 2816900 + 44632 27184 29567 30305 52584 52584 0.015906415951462805 PDDIAIIDV 9 Unmodified _PDDIAIIDV_ 0 0 0 REV__ENST00000449411.1_1_1:119977610-119977676:-|nuORF REV__ENST00000449411.1_1_1:119977610-119977676:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.5121459960938 1 970.509154 969.501877 0.25033 0.00024295 -0.048668 -4.7233E-05 0.20167 0.00019572 970.5090583447718 69.184 0.354 69.184 69.023 69.377 0 21 15 2 0 0 0 0.51218 2 38512 38512;38625 6.7232 1.9672 1 599330 + 44633 27184 29567 30305 52585;52586 52585 0.015906415951462805 PDDKDTDMSE 10 Unmodified _PDDKDTDMSE_ 0 0 0 REV__nc|ENSG00000133794|O00327-3|BMAL1 REV__nc|ENSG00000133794|O00327-3|BMAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.817138671875 3 384.816893 1151.42885 0.30775 0.00011843 1.4229 0.00054755 1.7306 0.00066598 385.1521582538277 38.85 0.65882 38.85 38.703 39.362 0 55 30 2 0 0 0 0.7191 1 20928 20928 0.77653 0.078866 1 2176500 + 44634 19933 29568 30306 52587 52587 -0.14080899980422146 PDDLGSLRLN 10 Unmodified _PDDLGSLRLN_ 0 0 0 nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 nc|ENSG00000185989|Q14644-2|RASA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2911987304688 2 550.290745 1098.56694 NaN NaN NaN NaN NaN NaN NaN 74.997 1 74.52 74.02 75.02 -0.47714 0 0 0 0.90015 1 41048 41048 8.7454 0 1 44635 9439 29569 30307 52588 52588 0.021596361210185933 PDDLLPTKY 9 Unmodified _PDDLLPTKY_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.27880859375 2 531.279315 1060.54408 0.35183 0.00018692 -0.86053 -0.00045718 -0.5087 -0.00027026 531.2786533514171 96.702 0.38895 96.702 96.542 96.931 0 40 22 2 0 0 0 0.49272 2 53493 53397;53493 7.9102 0.42677 1 1239800 + 44636 21044 29570 30308 52589;52590 52590 0.01622617003522464 PDDLLPTKY 9 Unmodified _PDDLLPTKY_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2802124023438 2 531.279315 1060.54408 0.29997 0.00015937 -0.4737 -0.00025166 -0.17373 -9.2297E-05 531.2791286986092 97.254 0.34946 97.011 96.796 97.146 -0.24277 30 15 3 0 0 0 0.54444 1 53066 53066 4.756 0.81161 1 803070 + 44637 21044 29570 30308 52591 52591 0.01622617003522464 PDDLLPTKY 9 Unmodified _PDDLLPTKY_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.279315 1060.54408 0.29997 0.00015937 -0.4737 -0.00025166 -0.17373 -9.2297E-05 531.2791286986092 97.254 0.34946 97.011 96.796 97.146 -0.24277 0.15451 0.00018473 NaN 7.9102 30 15 3 NaN NaN NaN NaN 0 NaN NaN 0 803070 + 44638 21044 29570 30308 0.01622617003522464 PDDNAYVSF 9 Unmodified _PDDNAYVSF_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2240600585938 2 514.221997 1026.42944 0.49622 0.00025517 1.0012 0.00051486 1.4975 0.00077003 514.223526567754 47.377 0.34629 47.377 47.171 47.517 0 32 15 4 0 0 0 0.43463 1 25913 25913 10.824 0 1 2017600 + 44639 21892 29571 30309 52592 52592 -0.08271692478433579 PDDRGFRDDF 10 Unmodified _PDDRGFRDDF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8505249023438 3 413.851148 1238.53161 -0.63348 -0.00026217 0.57736 0.00023894 -0.05612 -2.3225E-05 413.851325565692 26.682 0.42121 26.682 26.488 26.909 0 47 19 3 0 0 0 0.69064 1 13819 13819 1.9064 0 1 1486400 44640 16107 29572 30310 52593 52593 -0.07811026406807287 PDDVISFIK 9 Unmodified _PDDVISFIK_ 0 0 0 ENSG00000153993|ENST00000284136|SEMA3D ENSG00000153993|ENST00000284136|SEMA3D ENSG00000153993|ENST00000284136|SEMA3D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7471923828125 2 517.281857 1032.54916 -0.25717 -0.00013303 -0.32874 -0.00017005 -0.58591 -0.00030308 517.2814910480902 76.832 0.26545 76.352 76.235 76.5 -0.47945 15 11 2 0 0 0 0.21834 1 42061 42061 1.8442 0.19162 1 361750 44641 6287 29573 30311 52594 52594 0.034189208661246084 PDDVIVLMD 9 Unmodified _PDDVIVLMD_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7517395019531 2 508.752075 1015.4896 0.59565 0.00030304 -0.42421 -0.00021582 0.17143 8.7216E-05 508.7517773902564 59.607 0.35061 59.607 59.423 59.773 0 36 15 3 0 0 0 0.32871 1 33283 33283 15.847 4.2069 1 7165700 + 44642 19641 29574 30312 52595 52595 -0.017527181395507796 PDECMQRTG 9 Unmodified _PDECMQRTG_ 0 0 0 DDX4|p.G180D|1|0.16|ENSG00000152670|chr5:55781108-55781108|G/A|missense_variant;nc|ENSG00000152670|Q9NQI0-3|DDX4;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4 DDX4|p.G180D|1|0.16|ENSG00000152670|chr5:55781108-55781108|G/A|missense_variant DDX4|p.G180D|1|0.16|ENSG00000152670|chr5:55781108-55781108|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2612915039062 2 518.712959 1035.41136 0.99316 0.00051517 -2.2685 -0.0011767 -1.2754 -0.00066156 518.7113802482307 54.313 0.35476 54.313 54.173 54.528 0 36 15 4 0 0 0 0.20139 1 30073 30073 10.824 6.0679 1 2593500 44643 231 29575 30313 52596 52596 -0.10492473996441731 PDEDMKDLF 9 Unmodified _PDEDMKDLF_ 0 0 0 ENSG00000161021|ENST00000292599|MAML1 ENSG00000161021|ENST00000292599|MAML1 ENSG00000161021|ENST00000292599|MAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2467041015625 2 555.244615 1108.47468 0.47179 0.00026196 4.0692 0.0022594 4.5409 0.0025213 555.7466778117049 77.378 0.20455 77.378 77.215 77.42 0 12 8 2 0 0 0 0.48152 1 42998 42998 8.5933 1.8701 1 1178100 44644 6780 29576 30314 52597 52597 -0.07522210007550711 PDEEEEEEL 9 Unmodified _PDEEEEEEL_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3050537109375 2 559.722224 1117.42989 0.80607 0.00045117 0.56133 0.00031419 1.3674 0.00076536 559.7219422351421 72.502 0.33411 72.026 71.854 72.189 -0.47609 45 15 5 0 0 0 0.21367 1 39634 39634 4.756 1.8668 1 3137900 + 44645 19452 29577 30315 52598 52598 -0.12412362339887295 PDEEFFHKP 9 Unmodified _PDEEFFHKP_ 0 0 0 ENST00000394998.5_1_16:31044619-31045584:+|nuORF ENST00000394998.5_1_16:31044619-31045584:+|nuORF ENST00000394998.5_1_16:31044619-31045584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2672729492188 2 573.266739 1144.51892 NaN NaN NaN NaN NaN NaN NaN 14.453 1 14.453 13.953 14.953 0 0 0 0 0.85798 1 6870 6870 0.52476 0 1 44646 12754 29578 30316 52599 52599 -0.04755437799053652 PDEENGYEL 9 Unmodified _PDEENGYEL_ 0 0 0 REV__ENST00000525292.5_1_8:125861519-125861561:+|nuORF REV__ENST00000525292.5_1_8:125861519-125861561:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7037353515625 2 533.222194 1064.42983 -1.0634 -0.00056703 -0.10174 -5.425E-05 -1.1651 -0.00062128 533.2222830538547 32.445 0.39557 32.445 32.223 32.618 0 63 23 3 0 0 0 0.21367 1 16881 16881 4.756 0 1 37114000 + 44647 28351 29579 30317 52600 52600 -0.0998031754920703 PDEERDPQDEP 11 Unmodified _PDEERDPQDEP_ 0 0 0 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.7783813476562 2 663.775853 1325.53715 NaN NaN NaN NaN NaN NaN NaN 21.715 1 21.715 21.215 22.215 0 0 0 0 0.94201 1 11008 11008 1.0715 0.61312 1 + 44648 29891 29580 30318 52601 52601 -0.11259392405668223 PDEEWLPPGK 10 Unmodified _PDEEWLPPGK_ 0 0 0 REV__ENSG00000065485|ENST00000316218|PDIA5 REV__ENSG00000065485|ENST00000316218|PDIA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2852172851562 2 584.287671 1166.56079 NaN NaN NaN NaN NaN NaN NaN 86.345 1 85.842 85.342 86.342 -0.50318 0 0 0 0.71157 1 47245 47245 16.149 0.90062 1 + 44649 17377 29581 30319 52602 52602 -0.015828821105287716 PDEGRRDPP 9 Unmodified _PDEGRRDPP_ 0 0 0 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 MSMS AL20221201_MKP_PDAC_01 4 519.7503662109375 2 519.751787 1037.48902 NaN NaN NaN NaN NaN NaN NaN 33.02 1 29.164 28.664 29.664 -3.8562 0 0 0 0.46757 1 18898 18898 16.942 1.0951 1 44650 7655 29582 30320 52603 52603 -0.028223767443932957 PDEIDHVFE 9 Unmodified _PDEIDHVFE_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7484130859375 2 550.748379 1099.4822 0.48085 0.00026483 -0.32038 -0.00017645 0.16047 8.8379E-05 550.7482644799733 69.089 0.49317 69.089 68.811 69.304 0 38 21 2 0 0 0 0.10734 2 38540 38437;38540 32.305 8.457 1 4464600 44651 8296;16388 29583 30321 52604;52605 52605 -0.06355734415615188 PDELITTVIY 10 Unmodified _PDELITTVIY_ 0 0 0 REV__nc|ENSG00000155511|P42261-6|GRIA1 REV__nc|ENSG00000155511|P42261-6|GRIA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3123779296875 2 582.313354 1162.61216 0.18492 0.00010768 0.34701 0.00020207 0.53193 0.00030975 582.313725498406 83.95 0.27455 83.95 83.792 84.066 0 23 13 2 0 0 0 0.69064 1 46513 46513 3.9444 0 1 949830 + 44652 29717 29584 30322 52606 52606 0.03735441863523192 PDELITTVIY 10 Unmodified _PDELITTVIY_ 0 0 0 REV__nc|ENSG00000155511|P42261-6|GRIA1 REV__nc|ENSG00000155511|P42261-6|GRIA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 582.313354 1162.61216 0.18492 0.00010768 0.34701 0.00020207 0.53193 0.00030975 582.313725498406 83.95 0.27455 83.95 83.792 84.066 0 0 0 NaN 3.9444 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 949830 + 44653 29717 29584 30322 0.03735441863523192 PDELKEKLR 9 Unmodified _PDELKEKLR_ 0 0 0 REV__nc|ENSG00000065000|O14617-4|AP3D1 REV__nc|ENSG00000065000|O14617-4|AP3D1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2272033691406 3 376.552151 1126.63462 -0.12586 -4.7391E-05 0.56713 0.00021355 0.44127 0.00016616 376.5523898725728 31.103 0.17898 31.103 30.995 31.174 0 12 8 2 0 0 0 0.21185 1 16173 16173 3.8763 1.1411 1 967960 + 44654 17368 29585 30323 52607 52607 0.0763708605179545 PDENCCMN 8 Unmodified _PDENCCMN_ 0 0 0 REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3 REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7658996582031 2 463.146063 924.277573 NaN NaN NaN NaN NaN NaN NaN 34.604 1 34.631 34.131 35.131 0.027401 0 0 0 0.97444 1 18249 18249 0.79363 0 1 + 44655 21270 29586 30324 52608 52608 -0.18759456093641802 PDEPSSRGQL 10 Unmodified _PDEPSSRGQL_ 0 0 0 REV__ENST00000335858.11_1_17:33433462-33446148:-|nuORF REV__ENST00000335858.11_1_17:33433462-33446148:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7627563476562 2 543.264727 1084.5149 0.41194 0.00022379 -3.7437 -0.0020338 -3.3318 -0.00181 543.2627704116215 61.001 0.19368 61.001 60.929 61.123 0 11 7 2 0 0 0 0.23926 1 34073 34073 3.2813 1.2216 1 603810 + 44656 25642 29587 30325 52609 52609 -0.023975272927373226 PDEPTPSPCRL 11 Unmodified _PDEPTPSPCRL_ 0 0 0 REV__ENST00000602676.6_2_19:2271431-2271486:+|nuORF REV__ENST00000602676.6_2_19:2271431-2271486:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2501831054688 2 606.289888 1210.56522 0.063647 3.8589E-05 -1.209 -0.00073299 -1.1453 -0.0006944 606.289157083276 37.021 0.2812 37.021 36.878 37.159 0 20 13 2 0 0 0 0.27972 1 19643 19643 18.146 7.3224 1 1762700 + 44657 29269 29588 30326 52610 52610 -0.03163740959280403 PDERNGLKAVM 11 Unmodified _PDERNGLKAVM_ 0 0 0 REV__ENST00000572274.1_1_16:4391391-4409335:-|nuORF REV__ENST00000572274.1_1_16:4391391-4409335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8831176757812 3 410.548412 1228.62341 0.037193 1.5269E-05 -0.001334 -5.4766E-07 0.035859 1.4722E-05 410.548214921192 37.981 0.38043 37.71 37.462 37.842 -0.27133 37 18 3 0 0 0 0.24216 1 19953 19953 19.144 10.7 1 7020600 + 44658 24591 29589 30327 52611 52611 0.01823940685994785 PDERNGLKAVM 11 Unmodified _PDERNGLKAVM_ 0 0 0 REV__ENST00000572274.1_1_16:4391391-4409335:-|nuORF REV__ENST00000572274.1_1_16:4391391-4409335:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5490112304688 3 410.548412 1228.62341 0.89932 0.00036921 0.14422 5.921E-05 1.0435 0.00042842 410.5487233129332 42.28 0.26156 37.595 37.46 37.721 -4.6846 32 16 3 0 0 0 0.44182 1 25527 25527 15.538 4.7389 1 11451000 + 44659 24591 29589 30327 52612 52612 0.01823940685994785 PDEVDGDMY 9 Unmodified _PDEVDGDMY_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1040.052856445312 1 1040.38772 1039.38044 -1.0397 -0.0010817 -1.4514 -0.00151 -2.4911 -0.0025917 1040.388873411533 41.176 0.19355 41.176 41.024 41.218 0 11 9 2 0 0 0 0.19613 1 22107 22107 12.532 6.7997 1 1634100 + 44660 22971 29590 30328 52613 52613 -0.1376734882967412 PDEVDGDMY 9 Unmodified _PDEVDGDMY_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1040.38772 1039.38044 -0.46183 -0.00048048 1.7245 0.0017942 1.2627 0.0013137 1041.3867483597262 41.721 0.079609 41.414 41.375 41.454 -0.30682 0.1194 0.002642 NaN 12.532 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 9290600 + 44661 22971 29590 30328 -0.1376734882967412 PDEWRIFGSI 10 Unmodified _PDEWRIFGSI_ 0 0 0 ENSG00000033030|ENST00000633063|ZCCHC8;nc|ENSG00000033030|Q6NZY4-2|ZCCHC8 ENSG00000033030|ENST00000633063|ZCCHC8 ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7527465820312 2 610.308938 1218.60332 0.69287 0.00042287 -0.2243 -0.00013689 0.46858 0.00028598 610.3086560973605 46.067 0.26827 46.067 45.918 46.186 0 20 12 2 0 0 0 0.63399 1 25069 25069 9.3831 2.0939 1 2901800 44662 596 29591 30329 52614 52614 0.0027651301770674763 PDFEASRE 8 Unmodified _PDFEASRE_ 0 0 0 nc|ENSG00000172803|Q86XE0-2|SNX32;ENST00000530101.5_1_11:65601488-65618753:+|nuORF;ENSG00000172803|ENST00000308342|SNX32 nc|ENSG00000172803|Q86XE0-2|SNX32 nc|ENSG00000172803|Q86XE0-2|SNX32 MSMS AL20221201_MKP_PDAC_01 4 475.7127380371094 2 475.714339 949.414125 NaN NaN NaN NaN NaN NaN NaN 52.145 1 46.41 45.91 46.91 -5.7345 0 0 0 0.4392 1 32898 32898 48.346 8.3885 1 44663 8257 29592 30330 52615 52615 -0.06260559275619926 PDFFFFFF 8 Unmodified _PDFFFFFF_ 0 0 0 ENST00000537091.2_1_17:17772601-17875627:-|nuORF ENST00000537091.2_1_17:17772601-17875627:-|nuORF ENST00000537091.2_1_17:17772601-17875627:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2576293945312 2 557.257654 1112.50076 NaN NaN NaN NaN NaN NaN NaN 102.78 1 102.67 102.17 103.17 -0.10458 0 0 0 0.97444 1 56069 56069 0 0 1 44664 14985 29593 30331 52616 52616 -0.050995279831113294 PDFNNYLIF 9 Unmodified _PDFNNYLIF_ 0 0 0 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000589956.5_1_19:12822112-12831764:-|nuORF;nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000083312|Q92973-3|TNPO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2525024414062 2 571.779482 1141.54441 0.057261 3.2741E-05 -1.6098 -0.00092045 -1.5525 -0.00088771 571.7785637039154 51.337 0.13266 50.923 50.817 50.949 -0.41351 11 6 2 0 0 0 0.20727 1 27611 27611 7.9102 1.187 1 2826400 44665 1364;2337 29594 30332 52617 52617 -0.02069963276630915 PDFQSVVHHLF 11 Unmodified _PDFQSVVHHLF_ 0 0 0 REV__ENSG00000196914|ENST00000397843|ARHGEF12 REV__ENSG00000196914|ENST00000397843|ARHGEF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.33349609375 2 663.335487 1324.65642 NaN NaN NaN NaN NaN NaN NaN 55.203 1 55.203 54.703 55.703 0 0 0 0 0.93933 1 30660 30660 2.9952 0 1 + 44666 23880 29595 30333 52618 52618 0.007078908003677498 PDFREIRSF 9 Unmodified _PDFREIRSF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5375671386719 3 389.536612 1165.58801 0.40493 0.00015773 0.45343 0.00017663 0.85836 0.00033436 389.5368270306282 30.95 0.24807 30.848 30.691 30.939 -0.10269 13 9 2 0 0 0 0.43463 1 16073 16073 7.1017 0.064636 1 1581100 44667 10025 29596 30334 52619 52619 0.011836462205337739 PDFSIGDTY 9 Unmodified _PDFSIGDTY_ 0 0 0 REV__ENSG00000139182|ENST00000266546|CLSTN3 REV__ENSG00000139182|ENST00000266546|CLSTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7261962890625 2 507.724372 1013.43419 0.61546 0.00031248 -0.29292 -0.00014872 0.32254 0.00016376 507.7243506794593 57.85 0.32 57.85 57.716 58.036 0 33 13 3 0 0 0 0.14602 1 32166 32166 28.487 6.0342 1 2758900 + 44668 20392 29597 30335 52620 52620 -0.071988083356473 PDGGGIINTL 10 Unmodified _PDGGGIINTL_ 0 0 0 ENST00000506742.2_1_5:108120754-108121222:+|nuORF ENST00000506742.2_1_5:108120754-108121222:+|nuORF ENST00000506742.2_1_5:108120754-108121222:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7581481933594 2 478.756007 955.497461 NaN NaN NaN NaN NaN NaN NaN 66.787 1 66.304 65.804 66.804 -0.48323 0 0 0 0.8671 1 36478 36478 9.3831 3.029 1 44669 14527 29598 30336 52621 52621 0.01793177172248761 PDGKLSEVLT 10 Unmodified _PDGKLSEVLT_ 0 0 0 REV__nc|ENSG00000154957|P17022-2|ZNF18 REV__nc|ENSG00000154957|P17022-2|ZNF18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1058.402954101562 1 1058.57282 1057.56554 0.41471 0.000439 -1.8373 -0.0019449 -1.4226 -0.0015059 1058.5738782159592 48.02 0.29255 47.667 47.575 47.868 -0.3526 18 14 2 0 0 0 0.23634 1 25706 25706 1.4819 0 1 6293300 + 44670 21253 29599 30337 52622 52622 0.03906002032226752 PDGPAEALEQY 11 Unmodified _PDGPAEALEQY_ 0 0 0 REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.1846008300781 3 397.183904 1188.52988 1.2254 0.00048671 1.0591 0.00042064 2.2845 0.00090735 397.18432423942096 19.74 0.34045 17.084 16.898 17.239 -2.6564 70 22 4 0 0 0 0.66428 1 10515 10515 6.2344 0 1 39727000 + 44671 22871 29600 30338 52623 52623 -0.056840802154283665 PDGTLGLLIF 10 Unmodified _PDGTLGLLIF_ 0 0 0 REV__ENSG00000179695|ENST00000641202|OR6C2 REV__ENSG00000179695|ENST00000641202|OR6C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.301025390625 2 523.30005 1044.58555 0.30853 0.00016146 1.3167 0.000689 1.6252 0.00085046 523.300726480685 93.49 0.65234 93.033 92.836 93.489 -0.4574 67 28 3 0 0 0 0.42068 2 51126 51031;51126 20.454 0 1 2345800 + 44672 23111 29601 30339 52624;52625 52625 0.06503797762843533 PDGTLGLLIF 10 Unmodified _PDGTLGLLIF_ 0 0 0 REV__ENSG00000179695|ENST00000641202|OR6C2 REV__ENSG00000179695|ENST00000641202|OR6C2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.30005 1044.58555 1.6665 0.0008721 -0.49559 -0.00025934 1.171 0.00061276 523.2998982755407 92.917 0.34012 92.94 92.847 93.187 0.022987 -0.046251 -0.0017756 NaN 20.454 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1667100 + 44673 23111 29601 30339 0.06503797762843533 PDGTLLIYN 9 Unmodified _PDGTLLIYN_ 0 0 0 nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN nc|ENSG00000100767|O95428-2|PAPLN nc|ENSG00000100767|O95428-2|PAPLN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7862548828125 2 503.266207 1004.51786 0.06914 3.4796E-05 1.2393 0.00062367 1.3084 0.00065847 503.2668673257314 85.68 0.29424 85.179 85.1 85.395 -0.5015 36 13 4 0 0 0 0.17275 1 46893 46893 21.747 2.3076 1 1716500 44674 1874 29602 30340 52626 52626 0.01578347832048621 PDHESPSQES 10 Unmodified _PDHESPSQES_ 0 0 0 ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1 ENST00000571307.1_1_17:5433304-5487319:-|nuORF ENST00000571307.1_1_17:5433304-5487319:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.4885559082031 3 371.487875 1111.4418 0.11891 4.4175E-05 -0.69294 -0.00025742 -0.57403 -0.00021324 371.488414521056 48.088 0.56116 48.088 47.789 48.351 0 103 27 5 0 0 0 0.6785 1 26323 26323 2.8433 0 1 24426000 44675 1591 29603 30341 52627 52627 -0.10946700806039189 PDHGRAQTL 9 Unmodified _PDHGRAQTL_ 0 0 0 REV__ENSG00000178814|ENST00000618853|OPLAH REV__ENSG00000178814|ENST00000618853|OPLAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7547607421875 2 497.756872 993.499192 0.5563 0.0002769 -2.5037 -0.0012462 -1.9474 -0.00096932 497.75624421882304 74.134 0.24017 74.134 74.102 74.342 0 20 11 2 0 0 0 0.14 1 41266 41266 29.082 3.6823 1 1699700 + 44676 23067 29604 30342 52628 52628 0.002182309808517857 PDHGVQPELY 10 Unmodified _PDHGVQPELY_ 0 0 0 REV__ENSG00000136478|ENST00000584379|TEX2 REV__ENSG00000136478|ENST00000584379|TEX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3087768554688 2 577.77747 1153.54039 1.5253 0.00088126 -0.90289 -0.00052167 0.62237 0.00035959 577.7768477758767 98.195 0.30077 92.019 91.847 92.148 -6.1757 60 19 4 0 0 0 0.62068 1 64991 64991 10.074 0.72649 1 90566000 + 44677 20163 29605 30343 52629 52629 -0.030240527703199405 PDHRDHHPSLD 11 Unmodified _PDHRDHHPSLD_ 0 0 0 REV__ENST00000380056.7_1_20:3208478-3209263:-|nuORF REV__ENST00000380056.7_1_20:3208478-3209263:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 663.3021850585938 2 663.302707 1324.59086 NaN NaN NaN NaN NaN NaN NaN 23.559 1 20.731 20.231 21.231 -2.8273 0 0 0 0.93224 1 12758 12758 5.7319 0 1 + 44678 26306 29606 30344 52630 52630 -0.05845130392617648 PDHRKHFL 8 Unmodified _PDHRKHFL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1049.568603515625 1 1049.56392 1048.55665 0.19449 0.00020413 2.3817 0.0024997 2.5762 0.0027039 1049.5678435785946 59.701 0.32673 59.21 58.987 59.313 -0.49079 24 15 2 0 0 0 0.80676 1 32486 32486 2.5775 0 1 1917800 44679 6628;16309 29607 30345 52631 52631 0.03431117977083886 PDIETVYVI 9 Unmodified _PDIETVYVI_ 0 0 0 REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2 REV__nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1049.56591796875 1 1048.5561 1047.54883 0.49788 0.00052206 2.2353 0.0023439 2.7332 0.0028659 1048.5564378588028 77.595 0.71704 71.419 71.003 71.72 -6.1757 61 41 2 0 0 0 0.42049 1 50529 50529 16.942 7.5592 1 21909000 + 44680 21431 29608 30346 52632 52632 0.026955011462860057 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.7799682617188 2 434.778754 867.542954 0.53973 0.00023466 2.7135 0.0011798 3.2532 0.0014144 434.78010314540785 28.267 0.14663 28.221 28.142 28.288 -0.046408 7 5 2 0 0 0 0.80975 1 14603 14603 0.79363 0 1 3482500 + 44681 22392 29609 30347 52633 52633 0.10388447425305003 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 434.778754 867.542954 -0.63008 -0.00027394 2.5834 0.0011232 1.9533 0.00084926 434.77985437211476 28.373 0.19851 28.373 28.231 28.429 0 0.1414 -0.00039385 NaN 0.79363 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5141800 + 44682 22392 29609 30347 0.10388447425305003 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 434.778754 867.542954 0.53973 0.00023466 2.7135 0.0011798 3.2532 0.0014144 434.78010314540785 28.267 0.14663 28.221 28.142 28.288 -0.046408 -0.010702 -0.00028073 NaN 0.79363 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3482500 + 44683 22392 29609 30347 0.10388447425305003 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 434.778754 867.542954 0.37004 0.00016089 3.5337 0.0015364 3.9038 0.0016973 434.78018688879524 28.089 0.45494 28.119 28.012 28.467 0.029564 -0.11287 0.00043254 NaN 0.79363 40 18 4 NaN NaN NaN NaN 0 NaN NaN 0 111140000 + 44684 22392 29609 30347 0.10388447425305003 PDIKLLLG 8 Unmodified _PDIKLLLG_ 0 0 0 REV__ENSG00000169288|ENST00000315567|MRPL1 REV__ENSG00000169288|ENST00000315567|MRPL1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 434.778754 867.542954 0.8563 0.0003723 2.9516 0.0012833 3.8079 0.0016556 434.7798711387654 31.91 0.51376 28.214 27.966 28.479 -3.6958 -0.017826 -7.3684E-05 NaN 0.79363 59 28 3 NaN NaN NaN NaN 0 NaN NaN 0 30117000 + 44685 22392 29609 30347 0.10388447425305003 PDILDMPSL 9 Unmodified _PDILDMPSL_ 0 0 0 nc|ENSG00000213199|Q9UHC3-2|ASIC3 nc|ENSG00000213199|Q9UHC3-2|ASIC3 nc|ENSG00000213199|Q9UHC3-2|ASIC3 MSMS AL20221201_MKP_PDAC_01 4 500.7554626464844 2 500.754618 999.494683 NaN NaN NaN NaN NaN NaN NaN 90.962 1 84.787 84.287 85.287 -6.1757 0 0 0 0.53226 1 60115 60115 14.838 2.3067 1 44686 16541 29610 30348 52634 52634 -0.005084142769192113 PDISFNETI 9 Unmodified _PDISFNETI_ 0 0 0 REV__ENSG00000241360|ENST00000215904|PDXP REV__ENSG00000241360|ENST00000215904|PDXP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7816772460938 2 518.253297 1034.49204 0.83651 0.00043352 0.66602 0.00034517 1.5025 0.00077869 518.2537993031173 33.237 0.25922 29.381 29.272 29.531 -3.8562 31 15 3 0 0 0 0.19205 1 19085 19085 10.074 0 1 23368000 + 44687 24448 29611 30349 52635 52635 -0.023825464102401384 PDISGITTQGF 11 Unmodified _PDISGITTQGF_ 0 0 0 ENST00000492026.4_1_14:74507337-74544940:+|nuORF ENST00000492026.4_1_14:74507337-74544940:+|nuORF ENST00000492026.4_1_14:74507337-74544940:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2882690429688 2 568.285128 1134.5557 0.56957 0.00032368 2.2339 0.0012695 2.8034 0.0015932 568.2886951122044 93.608 0.95779 93.15 92.575 93.533 -0.4574 150 43 5 0 0 0 0.71036 2 51220 51220;51244 3.2813 0.97858 1 1582700 44688 14289 29612 30350 52636;52637 52636 -0.006191859731416116 PDISPLYAY 9 Unmodified _PDISPLYAY_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|68|3|anti-sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|68|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7640991210938 2 519.760758 1037.50696 -0.093902 -4.8807E-05 1.3798 0.00071716 1.2859 0.00066835 519.7623186708604 69.432 0.57899 68.953 68.555 69.134 -0.47903 55 24 4 0 0 0 0.28047 1 37898 37898 18.135 1.1927 1 4478200 + 44689 29415 29613 30351 52638 52638 -0.010290545422321884 PDIVINAKSA 10 Unmodified _PDIVINAKSA_ 0 0 0 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2963256835938 2 514.292756 1026.57096 0.34892 0.00017945 2.5738 0.0013237 2.9227 0.0015031 514.2944046026257 92.851 0.35773 92.393 92.257 92.615 -0.4574 30 19 2 0 0 0 0.64628 1 50717 50717 8.7454 1.4562 1 2276400 + 44690 29746 29614 30352 52639 52639 0.058737256147196604 PDKFVVGY 8 Unmodified _PDKFVVGY_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7440795898438 2 462.744911 923.475269 0.041793 1.934E-05 0.51119 0.00023655 0.55298 0.00025589 462.7451084486742 54.939 0.21875 54.461 54.349 54.567 -0.47798 17 10 3 0 0 0 0.58039 1 29805 29805 27.629 8.1898 1 2009300 44691 7379 29615 30353 52640 52640 0.010469974944726346 PDKILRHF 8 Unmodified _PDKILRHF_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2474365234375 2 513.298176 1024.5818 0.42672 0.00021903 -1.6274 -0.00083532 -1.2006 -0.00061629 513.2972483773726 83.107 0.18708 82.61 82.511 82.698 -0.49751 10 6 2 0 0 0 8.7369 1 45449 45449 10.183 1.5901 1 585900 44692 2500 29616 30354 52641 52641 0.07049172779647961 PDKKTVHY 8 Unmodified _PDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.266845703125 2 494.266542 986.51853 NaN NaN NaN NaN NaN NaN NaN 18.015 1 18.015 17.515 18.515 0 0 0 0 0.68135 1 8925 8925 29.082 10.947 1 44693 5709 29617 30355 52642 52642 0.024731872717552505 PDKKTVHY 8 Unmodified _PDKKTVHY_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MSMS AL20221201_MKP_PDAC_01 4 494.2672119140625 2 494.266542 986.51853 NaN NaN NaN NaN NaN NaN NaN 19.278 1 16.622 16.122 17.122 -2.6564 0 0 0 0.03089 1 10200 10200 106.94 55.31 1 44694 5709 29617 30355 52643 52643 0.024731872717552505 PDKKVALWN 9 Unmodified _PDKKVALWN_ 0 0 0 nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-3|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.538330078125 3 357.537953 1069.59203 -0.010512 -3.7583E-06 1.3791 0.00049307 1.3686 0.00048931 357.53830482335485 18.497 0.29625 18.503 18.386 18.683 0.0060463 32 15 3 0 0 0 0.52067 1 9413 9413 6.6304 0 1 3060600 44695 4345 29618 30356 52644 52644 0.06001735714221468 PDKMPLFQIY 10 Unmodified _PDKMPLFQIY_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3250732421875 2 626.325742 1250.63693 NaN NaN NaN NaN NaN NaN NaN 73.928 1 73.452 72.952 73.952 -0.47588 0 0 0 0.96981 1 40462 40462 3.9444 0 1 44696 5400 29619 30357 52645 52645 0.021637984652443265 PDKPLEAQLL 10 Unmodified _PDKPLEAQLL_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2177124023438 3 375.216768 1122.62847 1.681 0.00063073 -0.19747 -7.4094E-05 1.4835 0.00055664 375.2166501404919 20.655 0.54035 17.962 17.723 18.264 -2.693 107 32 4 0 0 0 0.38225 1 10928 10928 22.658 1.1211 1 85549000 44697 4816 29620 30358 52646 52646 0.07206567820298915 PDKYRHAREM 10 Unmodified _PDKYRHAREM_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826293945312 3 434.883906 1301.62989 NaN NaN NaN NaN NaN NaN NaN 82.879 1 82.879 82.379 83.379 0 0 0 0 1.0004 1 45971 45971 0.62683 0.4675 1 44698 1491 29621 30359 52647 52647 -0.008861213626232711 PDLAKSVRL 9 Unmodified _PDLAKSVRL_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.2402954101562 2 499.803291 997.59203 0.64824 0.00032399 0.12322 6.1586E-05 0.77146 0.00038558 499.80326123183124 56.801 0.37568 50.824 50.599 50.975 -5.9769 37 21 2 0 0 0 0.1325 1 36128 36128 19.257 7.0163 1 28459000 + 44699 18686 29622 30360 52648 52648 0.09313735714226823 PDLCEMHYGAD 11 Unmodified _PDLCEMHYGAD_ 0 0 0 REV__ENSG00000070047|ENST00000264555|PHRF1 REV__ENSG00000070047|ENST00000264555|PHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.498779296875 3 417.498729 1249.47436 -0.43076 -0.00017984 0.32832 0.00013707 -0.10244 -4.2767E-05 417.498791290299 29.424 0.16147 29.424 29.328 29.489 0 19 7 3 0 0 0 0.71341 1 15252 15252 1.2148 0 1 1681100 + 44700 17462 29623 30361 52649 52649 -0.14039952999041816 PDLDSYVFL 9 Unmodified _PDLDSYVFL_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.765869140625 2 534.76604 1067.51753 0.28648 0.0001532 0.27206 0.00014549 0.55854 0.00029869 534.7659987047788 100.62 0.20525 100.62 100.51 100.71 0 17 7 3 0 0 0 0.2143 1 55538 55538 21.747 9.2151 1 2671200 44701 5860 29624 30362 52650 52650 -0.013530718877973413 PDLDSYVFL 9 Unmodified _PDLDSYVFL_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7658081054688 2 534.76604 1067.51753 0.27328 0.00014614 0.27378 0.00014641 0.54706 0.00029255 534.7662585785358 100.75 0.14735 100.61 100.54 100.69 -0.13293 16 5 4 0 0 0 0.2143 1 54985 54985 21.747 9.2151 1 3697300 44702 5860 29624 30362 52651 52651 -0.013530718877973413 PDLDSYVFL 9 Unmodified _PDLDSYVFL_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.76604 1067.51753 0.28648 0.0001532 0.27206 0.00014549 0.55854 0.00029869 534.7659987047788 100.62 0.20525 100.62 100.51 100.71 0 -0.012357 -6.302E-05 NaN 21.747 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2671200 44703 5860 29624 30362 -0.013530718877973413 PDLDSYVFL 9 Unmodified _PDLDSYVFL_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.76604 1067.51753 0.27328 0.00014614 0.27378 0.00014641 0.54706 0.00029255 534.7662585785358 100.75 0.14735 100.61 100.54 100.69 -0.13293 -0.020624 -6.1177E-05 NaN 21.747 16 5 4 NaN NaN NaN NaN 0 NaN NaN 0 3697300 44704 5860 29624 30362 -0.013530718877973413 PDLDSYVFL 9 Unmodified _PDLDSYVFL_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.76604 1067.51753 0.65899 0.0003524 6.1822 0.003306 6.8411 0.0036584 534.7686592920353 100.71 0.084717 100.67 100.63 100.71 -0.04216 0.03298 0.006258 NaN 21.747 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 849330 44705 5860 29624 30362 -0.013530718877973413 PDLEECFKWFH 11 Unmodified _PDLEECFKWFH_ 0 0 0 REV__ENSG00000056050|ENST00000393381|HPF1 REV__ENSG00000056050|ENST00000393381|HPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2213745117188 3 484.220184 1449.63872 0.19091 9.2443E-05 1.6817 0.00081429 1.8726 0.00090674 484.2211054859108 47.01 0.29095 47.01 46.858 47.149 0 24 13 2 0 0 0 0.73115 1 25779 25779 0.45452 0 1 5257200 + 44706 17294 29625 30363 52652 52652 -0.06811192516806841 PDLELCRQL 9 Unmodified _PDLELCRQL_ 0 0 0 REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.782470703125 2 543.784241 1085.55393 NaN NaN NaN NaN NaN NaN NaN 38.271 1 38.271 37.771 38.771 0 0 0 0 0.04157 1 20429 20429 61.357 15.337 1 + 44707 22280 29626 30364 52653 52653 0.014574817372704274 PDLFKLAFQ 9 Unmodified _PDLFKLAFQ_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MSMS AL20221201_MKP_PDAC_01 4 360.2015380859375 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 16.826 1 14.269 13.769 14.769 -2.557 0 0 0 0.82739 1 8747 8747 2.4985 0 1 + 44708 22989 29627 30365 52654 52654 0.05019217482708882 PDLHFLQPKW 10 Unmodified _PDLHFLQPKW_ 0 0 0 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1280.197998046875 1 1280.67862 1279.67134 1.2057 0.0015441 1.1278 0.0014444 2.3335 0.0029884 1280.6812440586723 64.383 0.11674 64.373 64.298 64.415 -0.010529 8 5 2 0 0 0 0.23986 1 35233 35233 1.6526 0 1 4379100 + 44709 17110 29628 30366 52655 52655 0.04269382668371691 PDLISDALF 9 Unmodified _PDLISDALF_ 0 0 0 nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7612609863281 2 495.760758 989.506963 0.20974 0.00010398 0.095289 4.7241E-05 0.30503 0.00015122 495.7609803120239 86.828 0.32109 86.828 86.654 86.975 0 44 18 3 0 0 0 0.39863 1 48051 48051 12.532 3.9383 1 1138600 44710 8867 29629 30367 52656 52656 0.011789454577524339 PDLISVYPF 9 Unmodified _PDLISVYPF_ 0 0 0 REV__ENSG00000163960|ENST00000296328|UBXN7 REV__ENSG00000163960|ENST00000296328|UBXN7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7848510742188 2 525.778951 1049.54335 NaN NaN NaN NaN NaN NaN NaN 88.787 1 88.283 87.783 88.783 -0.50423 0 0 0 0.84369 1 48554 48554 2.3027 1.5091 1 + 44711 21843 29630 30368 52657 52657 0.020558223544639986 PDLIYKIPR 9 Unmodified _PDLIYKIPR_ 0 0 0 nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;ENSG00000100842|ENST00000216733|EFS nc|ENSG00000100842|O43281-3|EFS nc|ENSG00000100842|O43281-3|EFS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8772277832031 3 372.225486 1113.65463 0.15107 5.6232E-05 3.0861 0.0011487 3.2372 0.001205 372.22662064679906 55.155 0.23824 55.087 54.96 55.198 -0.068737 17 11 2 0 0 0 0.21564 1 29996 29996 2.2828 0 1 1945600 44712 1881 29631 30369 52658 52658 0.1023488178241223 PDLMPIDVNR 10 Unmodified _PDLMPIDVNR_ 0 0 0 REV__nc|ENSG00000292343|Q02040-2|AKAP17A REV__nc|ENSG00000292343|Q02040-2|AKAP17A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.302001953125 2 585.302798 1168.59104 NaN NaN NaN NaN NaN NaN NaN 92.321 1 92.321 91.821 92.821 0 0 0 0 0.99248 1 51049 51049 1.4819 0.8804 1 + 44713 23976 29632 30370 52659 52659 0.013491532830130382 PDLPFLTIVL 10 Unmodified _PDLPFLTIVL_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MSMS AL20221201_MKP_PDAC_01 4 376.2297668457031 3 376.561876 1126.6638 NaN NaN NaN NaN NaN NaN NaN 16.035 1 13.478 12.978 13.978 -2.557 0 0 0 0.93038 1 8277 8277 6.6304 0.84694 1 44714 9910 29633 30371 52660 52660 0.10553230348091347 PDLQGITIY 9 Unmodified _PDLQGITIY_ 0 0 0 ENSG00000125703|ENST00000317868|ATG4C ENSG00000125703|ENST00000317868|ATG4C ENSG00000125703|ENST00000317868|ATG4C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7601928710938 2 510.274032 1018.53351 0.34152 0.00017427 0.74673 0.00038104 1.0882 0.0005553 510.27445280174845 63.508 0.22095 63.508 63.464 63.685 0 17 10 2 0 0 0 0.20727 1 35406 35406 7.9102 0 1 1317200 44715 3872 29634 30372 52661 52661 0.024986343491036678 PDLQLEPYEV 10 Unmodified _PDLQLEPYEV_ 0 0 0 REV__nc|ENSG00000171606|Q96GC6-2|ZNF274 REV__nc|ENSG00000171606|Q96GC6-2|ZNF274 MSMS AL20221201_MKP_PDAC_01 4 601.8007202148438 2 601.800611 1201.58667 NaN NaN NaN NaN NaN NaN NaN 61.409 1 55.261 54.761 55.761 -6.1478 0 0 0 0.78298 1 39555 39555 13.042 0.80181 1 + 44716 29777 29635 30373 52662 52662 -0.006060326589249598 PDLSYDVKI 9 Unmodified _PDLSYDVKI_ 0 0 0 ENSG00000269058|ENST00000269881|CALR3 ENSG00000269058|ENST00000269881|CALR3 ENSG00000269058|ENST00000269881|CALR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2791748046875 2 525.279315 1048.54408 0.32749 0.00017202 0.41313 0.00021701 0.74061 0.00038903 525.2797258603451 68.565 0.29318 68.084 67.825 68.118 -0.48071 21 12 2 0 0 0 0.49272 1 37449 37449 7.9102 1.187 1 1258500 44717 10874 29636 30374 52663 52663 0.02174617003538515 PDLTKLMPF 9 Unmodified _PDLTKLMPF_ 0 0 0 REV__ENST00000464253.5_1_7:102964930-102985008:-|nuORF REV__ENST00000464253.5_1_7:102964930-102985008:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1062.573120117188 1 1061.56998 1060.5627 0.55914 0.00059356 0.27451 0.00029141 0.83365 0.00088497 1061.5705726473939 64.285 0.21218 63.8 63.654 63.867 -0.48512 10 9 2 0 0 0 0.58865 1 35032 35032 2.0598 0.40713 1 941620 + 44718 18463 29637 30375 52664 52664 0.03484455373745732 PDLTKLMPF 9 Unmodified _PDLTKLMPF_ 0 0 0 REV__ENST00000464253.5_1_7:102964930-102985008:-|nuORF REV__ENST00000464253.5_1_7:102964930-102985008:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1061.56998 1060.5627 0.55914 0.00059356 0.27451 0.00029141 0.83365 0.00088497 1061.5705726473939 64.285 0.21218 63.8 63.654 63.867 -0.48512 0 0 NaN 2.0598 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 941620 + 44719 18463 29637 30375 0.03484455373745732 PDLTQNEF 8 Unmodified _PDLTQNEF_ 0 0 0 REV__nc|ENSG00000135387|Q14444-2|CAPRIN1 REV__nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2247924804688 2 482.224539 962.434526 0.52971 0.00025544 -0.77713 -0.00037475 -0.24742 -0.00011931 482.22426780207337 57.716 0.30564 57.716 57.585 57.891 0 27 14 3 0 0 0 0.80676 1 32209 32209 2.5775 0 1 5451400 + 44720 20060 29638 30376 52665 52665 -0.048193886158060195 PDLTWILI 8 Unmodified _PDLTWILI_ 0 0 0 REV__ENSG00000094914|ENST00000209873|AAAS REV__ENSG00000094914|ENST00000209873|AAAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7853698730469 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 78.384 1 77.898 77.398 78.398 -0.48596 0 0 0 0.97444 1 42931 42931 0.79363 0 1 + 44721 17930 29639 30377 52666 52666 0.06752430079723126 PDLVSVLGALF 11 Unmodified _PDLVSVLGALF_ 0 0 0 REV__ENSG00000126461|ENST00000360565|SCAF1 REV__ENSG00000126461|ENST00000360565|SCAF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.8616943359375 3 377.55338 1129.63831 1.5716 0.00059335 -2.2744 -0.00085872 -0.70287 -0.00026537 377.5526205578918 37.946 0.25227 33.577 33.419 33.671 -4.3689 30 14 3 0 0 0 0.29799 1 22233 22233 6.6235 0 1 7565200 + 44722 19547 29640 30378 52667 52667 0.0786775582566861 PDLYMFKLD 9 Unmodified _PDLYMFKLD_ 0 0 0 REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF REV__ENST00000521168.5_1_8:68070723-68107652:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7847900390625 2 571.283543 1140.55253 0.61496 0.00035131 -1.3733 -0.00078456 -0.75838 -0.00043325 571.282929385325 89.168 0.34615 88.664 88.473 88.819 -0.50423 19 14 2 0 0 0 0.60664 1 48770 48770 1.8442 1.2427 1 391310 + 44723 18343 29641 30379 52668 52668 -0.012121523515133958 PDMFHCSGDFL 11 Unmodified _PDMFHCSGDFL_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.2598876953125 2 634.757366 1267.50018 0.062185 3.9472E-05 0.49065 0.00031144 0.55284 0.00035092 634.7579192786153 95.6 0.36208 95.232 95.076 95.438 -0.36814 61 20 4 0 0 0 0.73115 2 52177 52177;52272 1.3295 0.13619 1 2399900 + 44724 21159 29642 30380 52669;52670 52669 -0.12287058756760416 PDMFHCSGDFL 11 Unmodified _PDMFHCSGDFL_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.2598876953125 2 634.757366 1267.50018 0.062185 3.9472E-05 0.49065 0.00031144 0.55284 0.00035092 634.7579192786153 95.6 0.36208 95.232 95.076 95.438 -0.36814 61 20 4 0 0 0 0.30572 1 52177 52177 1.3295 0.13619 1 2399900 + 44725 21159 29642 30380 52671 52671 -0.12287058756760416 PDMFHCSGDFL 11 Unmodified _PDMFHCSGDFL_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.75927734375 2 634.757366 1267.50018 0.97985 0.00062197 0.61351 0.00038943 1.5934 0.0010114 634.7578651198444 100.38 0.1878 94.203 94.103 94.291 -6.1757 43 11 5 0 0 0 0.54936 1 67089 67089 13.906 4.5229 1 91505000 + 44726 21159 29642 30380 52672 52672 -0.12287058756760416 PDMVPFVL 8 Unmodified _PDMVPFVL_ 0 0 0 ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276596-202276920:-|nuORF ENSG00000136021|ENST00000360820|SCYL2;ENST00000392253.2_1_2:202276596-202276920:-|nuORF ENSG00000136021|ENST00000360820|SCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2488708496094 2 459.243689 916.472826 1.1607 0.00053305 0.097162 4.4621E-05 1.2579 0.00057767 459.2442382986852 42.052 0.60657 37.367 36.937 37.544 -4.6846 82 38 3 0 0 0 0.67481 1 25187 25187 19.439 0 1 23309000 44727 4776;12667 29643 30381 52673 52673 0.011248257651573113 PDNDERPWC 9 Unmodified _PDNDERPWC_ 0 0 0 ENSG00000109758|ENST00000382774|HGFAC ENSG00000109758|ENST00000382774|HGFAC ENSG00000109758|ENST00000382774|HGFAC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2318725585938 2 566.22983 1130.44511 0.30915 0.00017505 0.12066 6.8321E-05 0.42981 0.00024337 566.2303801874114 93.537 0.23611 93.537 93.387 93.623 0 16 11 2 0 0 0 0.61381 1 51691 51691 0.52476 0 1 311280 44728 2670 29644 30382 52674 52674 -0.11489729233016988 PDNEAGLR 8 Unmodified _PDNEAGLR_ 0 0 0 REV__ENSG00000001629|ENST00000265742|ANKIB1 REV__ENSG00000001629|ENST00000265742|ANKIB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2178649902344 2 436.217049 870.419545 NaN NaN NaN NaN NaN NaN NaN 20.151 1 20.151 19.651 20.651 0 0 0 0 0.97444 1 10125 10125 0.69038 0 1 + 44729 16930 29645 30383 52675 52675 -0.020848356931310263 PDNSTDRAF 9 Unmodified _PDNSTDRAF_ 0 0 0 REV__ENSG00000154124|ENST00000284274|OTULIN REV__ENSG00000154124|ENST00000284274|OTULIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7323913574219 2 511.73052 1021.44649 -0.91365 -0.00046754 -4.4695 -0.0022872 -5.3831 -0.0027547 511.7272665380206 32.273 0.20881 32.273 32.146 32.355 0 15 10 2 0 0 0 0.23158 2 16844 16844;16855 20.454 6.9457 1 2126100 + 44730 21208 29646 30384 52676;52677 52676 -0.06337771872631492 PDNYVDRRF 9 Unmodified _PDNYVDRRF_ 0 0 0 ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.4356079101562 2 591.288537 1180.56252 0.33991 0.00020099 -0.12521 -7.4037E-05 0.2147 0.00012695 591.2887875452392 72.941 0.32689 72.941 72.799 73.126 0 25 14 3 0 0 0 0.58865 1 40618 40618 2.0598 0.40713 1 485780 44731 4748 29647 30385 52678 52678 -0.020538283019277515 PDPAQTFVT 9 Unmodified _PDPAQTFVT_ 0 0 0 ENST00000424358.1_1_20:33865191-33865500:-|nuORF;ENST00000435366.2_2_20:33865018-33865500:-|nuORF ENST00000424358.1_1_20:33865191-33865500:-|nuORF ENST00000424358.1_1_20:33865191-33865500:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.2444152832031 2 488.242732 974.470912 NaN NaN NaN NaN NaN NaN NaN 48.985 1 43.589 43.089 44.089 -5.3961 0 0 0 0.46232 1 30556 30556 17.113 1.2657 1 44732 13146 29648 30386 52679 52679 -0.01734511719087095 PDPEKPCKM 9 Carbamidomethyl (C) _PDPEKPC(Carbamidomethyl (C))KM_ PDPEKPC(1)KM PDPEKPC(93)KM 0 1 0 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2572021484375 2 551.257002 1100.49945 0.87943 0.00048479 -0.7881 -0.00043445 0.091331 5.0347E-05 551.2565903799428 35.052 0.35361 30.957 30.801 31.155 -4.0951 24 20 2 0 0 0 0.0081887 1 20292 20292 93.166 60.38 1 9736600 44733 10081 29649 30387 52680 52680 912 -0.04677853405837595 PDPGTWEEY 9 Unmodified _PDPGTWEEY_ 0 0 0 ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 ENSG00000198203|ENST00000251481|SULT1C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2275390625 2 547.227279 1092.44001 0.56285 0.000308 -0.29451 -0.00016117 0.26833 0.00014684 547.227288003845 51.63 0.69236 51.63 51.15 51.842 0 60 31 2 0 0 0 0.2001 1 28509 28509 23.148 10.617 1 3650200 44734 10062 29650 30388 52681 52681 -0.10251709824001409 PDPKLLEKV 9 Unmodified _PDPKLLEKV_ 0 0 0 ENSG00000206190|ENST00000555815|ATP10A ENSG00000206190|ENST00000555815|ATP10A ENSG00000206190|ENST00000555815|ATP10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.8120727539062 2 519.813325 1037.6121 0.53085 0.00027595 -1.8958 -0.00098547 -1.365 -0.00070953 519.8128591631222 67.656 0.24301 67.656 67.523 67.766 0 18 11 2 0 0 0 0.20507 1 37715 37715 22.658 4.285 1 1559100 44735 10395 29651 30389 52682 52682 0.09479486654186076 PDPKTFKQH 9 Unmodified _PDPKTFKQH_ 0 0 0 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 ENSG00000120963|ENST00000311212|ZNF706 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5295104980469 3 366.529458 1096.56654 -0.36053 -0.00013215 0.46829 0.00017164 0.10776 3.9497E-05 366.529584747114 36.806 0.32462 36.556 36.405 36.729 -0.2497 34 14 3 0 0 0 0.55775 1 19413 19413 2.2828 0 1 7457900 44736 3559 29652 30390 52683 52683 0.022122611917893664 PDPLKYYLLY 10 Unmodified _PDPLKYYLLY_ 0 0 0 nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2;nc|ENSG00000203880|Q9NV79-3|PCMTD2;ENST00000266078.7_1_20:62903543-62904950:+|nuORF nc|ENSG00000203880|Q9NV79-2|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1284.60302734375 1 1284.68745 1283.68018 0.98754 0.0012687 0.42447 0.00054532 1.412 0.001814 1284.6896404156232 65.159 0.18443 65.159 65.077 65.261 7.6294E-06 12 8 2 0 0 0 0.71123 1 35682 35682 1.6526 0 1 2721900 44737 10231 29653 30391 52684 52684 0.04968311514198831 PDPRAAPL 8 Unmodified _PDPRAAPL_ 0 0 0 ENSG00000163701|ENST00000383814|IL17RE;ENST00000454190.6_2_3:9956219-9957488:+|nuORF;nc|ENSG00000163701|Q8NFR9-2|IL17RE ENSG00000163701|ENST00000383814|IL17RE ENSG00000163701|ENST00000383814|IL17RE MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.7345886230469 2 418.734877 835.455202 0.74539 0.00031212 0.21157 8.8592E-05 0.95696 0.00040071 418.7348436822151 27.536 0.38122 24.5 24.317 24.699 -3.0365 30 18 2 0 0 0 0.40035 1 15258 15258 44.407 4.4497 1 24837000 44738 7053 29654 30392 52685 52685 0.030892465545093728 PDPRRMYTIM 10 Unmodified _PDPRRMYTIM_ 0 0 0 ENSG00000113300|ENST00000261951|CNOT6;ENST00000502447.1_1_5:179956276-179991564:+|nuORF ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2142333984375 3 427.214376 1278.6213 1.2766 0.00054536 -1.299 -0.00055496 -0.022453 -9.5923E-06 427.2137470387034 19.832 0.26382 17.176 17.03 17.294 -2.6564 19 16 2 0 0 0 0.69385 1 10519 10519 3.5871 0.95582 1 2303300 44739 2956 29655 30393 52686 52686 -0.006868113234531847 PDPSDCGN 8 Unmodified _PDPSDCGN_ 0 0 0 REV__nc|ENSG00000081189|Q06413-3|MEF2C REV__nc|ENSG00000081189|Q06413-3|MEF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.283447265625 1 804.282859 803.275583 -0.058323 -4.6908E-05 -1.6182 -0.0013015 -1.6765 -0.0013484 804.2807202333844 102.47 0.11091 102.35 102.28 102.39 -0.11613 10 4 3 0 0 0 0.81007 1 55898 55898 0.6015 0.6015 1 1113600 + 44740 17687 29656 30394 52687 52687 -0.13392425515598916 PDPSDDDDDDD 11 Unmodified _PDPSDDDDDDD_ 0 0 0 REV__ENSG00000110696|ENST00000228136|C11orf58 REV__ENSG00000110696|ENST00000228136|C11orf58 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.6891479492188 2 610.689109 1219.36367 NaN NaN NaN NaN NaN NaN NaN 15.746 1 15.752 15.252 16.252 0.0057774 0 0 0 0.9435 1 7862 7862 0 0 1 + 44741 18714 29657 30395 52688 52688 -0.23724222972600728 PDPSEYFEI 9 Unmodified _PDPSEYFEI_ 0 0 0 REV__ENSG00000155189|ENST00000285518|AGPAT5 REV__ENSG00000155189|ENST00000285518|AGPAT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7461547851562 2 548.745305 1095.47606 NaN NaN NaN NaN NaN NaN NaN 76.909 1 76.909 76.409 77.409 0 0 0 0 0.36554 1 42753 42753 21.747 11.563 1 + 44742 21261 29658 30396 52689 52689 -0.06786252647157198 PDPSQYQSL 9 Unmodified _PDPSQYQSL_ 0 0 0 ENSG00000180543|ENST00000322128|TSPYL5 ENSG00000180543|ENST00000322128|TSPYL5 ENSG00000180543|ENST00000322128|TSPYL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2428588867188 2 517.743096 1033.47164 -0.29383 -0.00015213 -0.28241 -0.00014622 -0.57623 -0.00029834 517.7431660170756 34.978 0.5526 34.978 34.827 35.38 0 67 28 4 0 0 0 0.1773 1 18651 18651 25.399 1.3787 1 45350000 44743 8911 29659 30397 52690 52690 -0.04375717070047358 PDPVARPGF 9 Unmodified _PDPVARPGF_ 0 0 0 nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3 nc|ENSG00000132031|O15232-2|MATN3 nc|ENSG00000132031|O15232-2|MATN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2537536621094 2 478.253434 954.492316 0.079694 3.8114E-05 0.16994 8.1276E-05 0.24964 0.00011939 478.2534216504812 32.137 0.52311 32.008 31.699 32.222 -0.12915 24 20 2 0 0 0 0.32871 1 16735 16735 15.847 1.0089 1 927990 44744 4370 29660 30398 52691 52691 0.01324918100283412 PDQEASITF 9 Unmodified _PDQEASITF_ 0 0 0 nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7587585449219 2 504.237647 1006.46074 0.072942 3.678E-05 0.37867 0.00019094 0.45162 0.00022772 504.2376214346364 41.692 0.14014 41.692 41.645 41.785 0 9 6 2 0 0 0 0.20358 1 22548 22548 6.2058 0 1 1563200 44745 16266;16265 29661 30399 52692 52692 -0.04223119444338863 PDQKENTHF 9 Unmodified _PDQKENTHF_ 0 0 0 ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2;nc|ENSG00000064886|Q15782-5|CHI3L2 ENSG00000064886|ENST00000369748|CHI3L2 ENSG00000064886|ENST00000369748|CHI3L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2599487304688 2 558.259445 1114.50434 NaN NaN NaN NaN NaN NaN NaN 40.369 1 40.072 39.572 40.572 -0.29716 0 0 0 0.46757 1 21337 21337 16.942 5.302 1 44746 886 29662 30400 52693 52693 -0.04833509947206949 PDQKQLRY 8 Unmodified _PDQKQLRY_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.2096557617188 2 524.282723 1046.55089 0.53199 0.00027892 -1.4491 -0.00075972 -0.91707 -0.0004808 524.7828642551685 32.889 0.15661 29.033 28.924 29.081 -3.8562 13 8 2 0 0 0 8.7369 1 18765 18765 71.134 20.279 1 8012700 44747 9379 29663 30401 52694 52694 0.02947974674748366 PDQLPQNNTL 10 Unmodified _PDQLPQNNTL_ 0 0 0 ENSG00000143756|ENST00000366862|FBXO28;ENST00000483773.1_1_1:224301900-224321920:+|nuORF;nc|ENSG00000143756|Q9NVF7-2|FBXO28;ENST00000519894.1_1_1:224301987-224318335:+|nuORF ENSG00000143756|ENST00000366862|FBXO28 ENSG00000143756|ENST00000366862|FBXO28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7880859375 2 570.288202 1138.56185 0.4467 0.00025475 3.1224 0.0017807 3.5691 0.0020354 570.2906674830124 61.309 0.36524 61.309 61.045 61.411 0 41 15 3 0 0 0 0.69064 1 34089 34089 3.9444 0 1 5600100 44748 5548 29664 30402 52695 52695 -0.0018866774162233924 PDQSFGLLV 9 Unmodified _PDQSFGLLV_ 0 0 0 REV__ENSG00000221840|ENST00000319760|OR4A5 REV__ENSG00000221840|ENST00000319760|OR4A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.515869140625 1 975.514573 974.507297 0.1353 0.00013199 -0.35154 -0.00034293 -0.21624 -0.00021095 975.515611035731 81.42 0.22852 81.42 81.347 81.576 0 11 9 2 0 0 0 0.34134 1 45198 45198 15.248 3.7538 1 330550 + 44749 24359 29665 30403 52696 52696 0.019023651776251427 PDQSFGLLV 9 Unmodified _PDQSFGLLV_ 0 0 0 REV__ENSG00000221840|ENST00000319760|OR4A5 REV__ENSG00000221840|ENST00000319760|OR4A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2618713378906 2 488.260925 974.507297 1.1819 0.00057706 0.17684 8.6343E-05 1.3587 0.0006634 488.2611180765193 89.229 0.52687 83.054 82.746 83.273 -6.1757 50 29 2 0 0 0 0.044011 2 58919 58793;58919 47.749 2.0491 1 18113000 + 44750 24359 29665 30403 52697;52698 52698 0.019023651776251427 PDQSFRTGSP 10 Unmodified _PDQSFRTGSP_ 0 0 0 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2;ENSG00000116786|ENST00000375799|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2616577148438 2 546.259445 1090.50434 NaN NaN NaN NaN NaN NaN NaN 69.91 1 69.431 68.931 69.931 -0.47903 0 0 0 0.81856 1 38222 38222 11.495 0.67078 1 44751 3256 29666 30404 52699 52699 -0.03729509947174847 PDQSFSYSCL 10 Unmodified _PDQSFSYSCL_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7445068359375 2 573.742239 1145.46993 NaN NaN NaN NaN NaN NaN NaN 55.685 1 55.685 55.185 56.185 0 0 0 0 0.8671 1 30944 30944 9.3831 1.2276 1 44752 9628 29667 30405 52700 52700 -0.0969909415030088 PDRDSSPTPLL 11 Unmodified _PDRDSSPTPLL_ 0 0 0 REV__ENST00000531709.6_1_11:62566311-62566866:-|nuORF REV__ENST00000531709.6_1_11:62566311-62566866:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.3095092773438 2 599.309135 1196.60372 NaN NaN NaN NaN NaN NaN NaN 60.353 1 60.353 59.853 60.853 0 0 0 0 0.88164 1 33656 33656 8.1555 1.4324 1 + 44753 28451 29668 30406 52701 52701 0.013278879468998639 PDRFRYPNE 9 Unmodified _PDRFRYPNE_ 0 0 0 REV__ENSG00000157350|ENST00000342907|ST3GAL2 REV__ENSG00000157350|ENST00000342907|ST3GAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5288696289062 3 398.528117 1192.56252 -0.46677 -0.00018602 1.249 0.00049777 0.78224 0.00031175 398.52878247131036 20.834 0.48509 20.834 20.425 20.91 0 85 55 3 0 0 0 0.55775 1 10367 10367 2.2828 0 1 5008400 + 44754 21377 29669 30407 52702 52702 -0.026058283018983275 PDRFSAQQF 9 Unmodified _PDRFSAQQF_ 0 0 0 nc|ENSG00000276405|A0A0A6YYD4|TRBV13 nc|ENSG00000276405|A0A0A6YYD4|TRBV13 nc|ENSG00000276405|A0A0A6YYD4|TRBV13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7684936523438 2 548.26453 1094.51451 0.16428 9.0071E-05 -0.43451 -0.00023823 -0.27023 -0.00014816 548.767101439684 65.604 0.8295 59.428 59.053 59.883 -6.1757 103 47 3 0 0 0 0.28023 1 42433 42433 18.146 0 1 164490000 44755 16606 29670 30408 52703 52703 -0.028969022219598628 PDRILMQKI 9 Unmodified _PDRILMQKI_ 0 0 0 REV__ENST00000428400.5_1_X:47082893-47085639:+|nuORF REV__ENST00000428400.5_1_X:47082893-47085639:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.3291015625 2 557.326076 1112.6376 NaN NaN NaN NaN NaN NaN NaN 23.606 1 20.778 20.278 21.278 -2.8273 0 0 0 0.79814 1 12785 12785 9.3831 4.0862 1 + 44756 26936 29671 30409 52704 52704 0.08578637904952302 PDRIMNTF 8 Oxidation (M) _PDRIM(Oxidation (M))NTF_ PDRIM(1)NTF PDRIM(52)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2422790527344 2 505.242209 1008.46987 0.37323 0.00018857 0.98847 0.00049942 1.3617 0.00068799 505.243243540866 31.505 0.80842 31.505 31.318 32.126 0 56 39 3 0 0 0 0.33377 1 16395 16395 51.63 24.746 1 19633000 44757 9643;9783;4920;10820;14685;8557 29672 30410 52705 52705 895;1453 -0.03403049359644683 PDRIMNTF 8 Oxidation (M) _PDRIM(Oxidation (M))NTF_ PDRIM(1)NTF PDRIM(60)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2434387207031 2 505.242209 1008.46987 NaN NaN NaN NaN NaN NaN NaN 43.142 1 43.142 42.642 43.642 0 0 0 0 0.33738 1 23410 23410 60.074 25.971 1 44758 9643;9783;4920;10820;14685;8557 29672 30410 52706 52706 895;1453 -0.03403049359644683 PDRIMNTF 8 Oxidation (M) _PDRIM(Oxidation (M))NTF_ PDRIM(1)NTF PDRIM(52)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2422180175781 2 505.242209 1008.46987 -0.23095 -0.00011669 1.3027 0.00065818 1.0717 0.00054149 505.24287403864236 31.472 0.29104 31.37 31.238 31.529 -0.10269 23 11 3 0 0 0 0.33377 1 16355 16355 51.63 24.746 1 9317300 44759 9643;9783;4920;10820;14685;8557 29672 30410 52707 52707 895;1453 -0.03403049359644683 PDRIMNTF 8 Unmodified _PDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2444152832031 2 497.244752 992.474951 0.53356 0.00026531 -0.54703 -0.00027201 -0.01347 -6.6981E-06 497.24439389082886 62.108 0.48914 55.933 55.741 56.23 -6.1757 35 27 2 0 0 0 0.10059 1 40078 40078 99.755 43.578 1 24093000 44760 9643;9783;4920;10820;14685;8557 29672 30411 52708 52708 -0.02158745497035852 PDRPRWDRCRY 11 Unmodified _PDRPRWDRCRY_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.5845642089844 3 507.249359 1518.72625 0.29563 0.00014996 0.85 0.00043116 1.1456 0.00058112 507.249605626333 29.667 0.20363 29.587 29.44 29.643 -0.080431 11 8 2 0 0 0 0.71503 1 15361 15361 2.8433 0.21205 1 8095500 44761 2420 29673 30412 52709 52709 -0.012365538026642753 PDRPRWDRCRY 11 Unmodified _PDRPRWDRCRY_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.5838012695312 3 507.249359 1518.72625 0.19508 9.8956E-05 1.5775 0.0008002 1.7726 0.00089915 507.25012495080307 29.418 0.18741 29.448 29.402 29.589 0.030104 15 9 2 0 0 0 0.71503 1 15376 15376 2.8433 0.4085 1 8873400 44762 2420 29673 30412 52710 52710 -0.012365538026642753 PDRPTWSPF 9 Unmodified _PDRPTWSPF_ 0 0 0 REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7675170898438 2 551.769448 1101.52434 -0.55675 -0.0003072 0.10002 5.519E-05 -0.45673 -0.00025201 552.2717680050624 101.27 0.1107 101.23 101.16 101.27 -0.04216 12 3 5 0 0 0 0.54444 1 56284 56284 4.756 0.42677 1 5907300 + 44763 29809 29674 30413 52711 52711 -0.022357142165901678 PDRPTWSPF 9 Unmodified _PDRPTWSPF_ 0 0 0 REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.769448 1101.52434 -0.55675 -0.0003072 0.10002 5.519E-05 -0.45673 -0.00025201 552.2717680050624 101.27 0.1107 101.23 101.16 101.27 -0.04216 0 0 NaN 4.756 12 3 5 NaN NaN NaN NaN 0 NaN NaN 0 5907300 + 44764 29809 29674 30413 -0.022357142165901678 PDRQRRKREL 10 Unmodified _PDRQRRKREL_ 0 0 0 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 nc|ENSG00000163935|Q9UHJ3-2|SFMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2677001953125 3 451.932248 1352.77491 1.5513 0.00070109 0.56221 0.00025408 2.1135 0.00095517 451.93225753083794 91.631 1.0741 91.668 91.426 92.5 0.036507 42 39 2 0 0 0 0.71981 1 50911 50911 0.69767 0 1 3912200 44765 7099 29675 30414 52712 52712 0.11263682828735 PDRTRSLP 8 Unmodified _PDRTRSLP_ 0 0 0 ENST00000595594.1_1_19:17889305-17893945:+|nuORF ENST00000595594.1_1_19:17889305-17893945:+|nuORF ENST00000595594.1_1_19:17889305-17893945:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2616577148438 2 471.261791 940.509028 -0.2552 -0.00012027 0.2367 0.00011155 -0.018503 -8.7198E-06 471.26183611689066 18.329 0.15988 18.329 18.247 18.407 0 56 24 3 0 0 0 0.79783 1 9079 9079 7.9102 1.5561 1 2399800 44766 15759 29676 30415 52713 52713 0.03639418986222154 PDRWYDLL 8 Unmodified _PDRWYDLL_ 0 0 0 ENST00000367099.3_1_1:206943020-206944398:-|nuORF ENST00000367099.3_1_1:206943020-206944398:-|nuORF ENST00000367099.3_1_1:206943020-206944398:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2720947265625 2 539.271824 1076.5291 -0.32687 -0.00017627 0.06767 3.6492E-05 -0.2592 -0.00013978 539.2719416604027 41.383 0.23999 41.383 41.241 41.48 0 28 11 3 0 0 0 0.76266 1 22285 22285 11.64 0.14559 1 10311000 44767 12222 29677 30416 52714 52714 -0.006108300738333128 PDSDKAILDI 10 Unmodified _PDSDKAILDI_ 0 0 0 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2405395507812 2 543.787504 1085.56045 0.54661 0.00029724 -2.9634 -0.0016114 -2.4168 -0.0013142 543.7862604156991 38.622 0.23079 38.622 38.494 38.725 0 17 10 2 0 0 0 0.22941 1 20570 20570 13.906 0.86358 1 984420 44768 10073 29678 30417 52715 52715 0.021096981696246075 PDSGVVEYL 9 Unmodified _PDSGVVEYL_ 0 0 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.4805297851562 1 978.477854 977.470577 0.6581 0.00064394 -0.28776 -0.00028157 0.37034 0.00036237 978.4775176083158 47.71 0.29354 47.71 47.558 47.852 0 23 13 2 0 0 0 0.51218 1 26199 26199 6.7232 1.9672 1 4914000 44769 2956;5102 29679 30418 52716 52716 -0.019059314389664905 PDSGVVEYL 9 Unmodified _PDSGVVEYL_ 0 0 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MSMS AL20221201_MKP_PDAC_01 4 489.7433471679688 2 489.742565 977.470577 NaN NaN NaN NaN NaN NaN NaN 55.699 1 49.778 49.278 50.278 -5.9211 0 0 0 0.18753 1 35485 35485 32.305 5.4218 1 44770 2956;5102 29679 30418 52717 52717 -0.019059314389664905 PDSLFQCYN 9 Unmodified _PDSLFQCYN_ 0 0 0 ENSG00000146247|ENST00000275034|PHIP ENSG00000146247|ENST00000275034|PHIP ENSG00000146247|ENST00000275034|PHIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.794677734375 2 543.731674 1085.4488 -0.035407 -1.9252E-05 0.69416 0.00037744 0.65875 0.00035818 543.7320634300565 35.551 0.29736 35.551 35.479 35.776 0 25 14 2 0 0 0 0.21473 1 18778 18778 4.3292 0.38484 1 8369800 44771 5765 29680 30419 52718 52718 -0.09051059459170574 PDSLLPNIF 9 Unmodified _PDSLLPNIF_ 0 0 0 nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000508980.5_1_6:86270935-86284080:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14;ENST00000508980.5_1_6:86270935-86284080:-|nuORF nc|ENSG00000135317|Q9Y5W7-2|SNX14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2754821777344 2 508.276575 1014.5386 NaN NaN NaN NaN NaN NaN NaN 77.042 1 77.092 76.592 77.592 0.05011 0 0 0 0.6032 1 42515 42515 12.532 0.89125 1 44772 4688;14572 29681 30420 52719 52719 0.03190938211696448 PDSNGDGETRN 11 Unmodified _PDSNGDGETRN_ 0 0 0 REV__ENSG00000099715|ENST00000698851|PCDH11Y REV__ENSG00000099715|ENST00000698851|PCDH11Y MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.55322265625 3 387.830412 1160.46941 1.0463 0.00040577 -1.0205 -0.00039577 0.025784 9.9996E-06 387.83015259680286 32.703 0.37636 28.846 28.652 29.028 -3.8562 84 19 5 0 0 0 0.30551 1 18771 18771 1.2148 0.8642 1 75516000 + 44773 17982 29682 30421 52720 52720 -0.10440797545788882 PDSQRLKL 8 Unmodified _PDSQRLKL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7799987792969 2 478.779816 955.545079 -0.54583 -0.00026133 0.018353 8.7868E-06 -0.52747 -0.00025254 478.7797072032389 27.962 0.18626 27.962 27.825 28.011 0 13 9 2 0 0 0 0.24723 1 14402 14402 62.573 7.7991 1 1495900 44774 2543 29683 30422 52721 52721 0.0655287616308442 PDSRIRVC 8 Unmodified _PDSRIRVC_ 0 0 0 ENST00000517342.1_1_8:57389817-57390279:-|nuORF ENST00000517342.1_1_8:57389817-57390279:-|nuORF ENST00000517342.1_1_8:57389817-57390279:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2498168945312 2 473.250369 944.486184 NaN NaN NaN NaN NaN NaN NaN 74.123 1 74.123 73.623 74.623 0 0 0 0 0.97444 1 41252 41252 0.69038 0 1 44775 14672 29684 30423 52722 52722 0.011720765971176661 PDSVLRRF 8 Unmodified _PDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2804260253906 2 495.279983 988.545414 0.62652 0.0003103 -2.2695 -0.001124 -1.6429 -0.00081371 495.2788800463753 47.991 0.44205 47.952 47.7 48.142 -0.038643 49 21 3 0 0 0 0.21098 2 25803 25803;25912 68.081 13.307 1 8026100 44776 3109 29685 30424 52723;52724 52723 0.05068295882949769 PDSVLRRF 8 Unmodified _PDSVLRRF_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000472800.1_1_2:74756265-74756756:-|nuORF;ENST00000463900.5_1_2:74756150-74756756:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2810363769531 2 495.279983 988.545414 0.60422 0.00029926 -1.2713 -0.00062965 -0.66708 -0.00033039 495.2793220041628 53.183 0.27838 47.379 47.251 47.529 -5.8042 25 16 2 0 0 0 0.077912 1 33581 33581 115.69 55.302 1 14715000 44777 3109 29685 30424 52725 52725 0.05068295882949769 PDSVTPLII 9 Unmodified _PDSVTPLII_ 0 0 0 nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.779541015625 2 477.778951 953.543348 0.54048 0.00025823 1.033 0.00049355 1.5735 0.00075178 477.77939228980915 74.169 0.48239 74.169 73.945 74.428 0 36 22 2 0 0 0 0.58865 1 41370 41370 2.0598 0 1 1135200 44778 1128 29686 30425 52726 52726 0.06471822354478718 PDTAFTYYL 9 Unmodified _PDTAFTYYL_ 0 0 0 REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13 REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7568969726562 2 545.758215 1089.50188 0.52398 0.00028597 -0.7535 -0.00041123 -0.22952 -0.00012526 545.7580856826798 73.911 0.53249 73.435 73.208 73.741 -0.47588 67 24 4 0 0 0 0.078417 1 40385 40385 38.151 4.0487 1 6176700 + 44779 18548 29687 30426 52727 52727 -0.03929358404866434 PDTAWTQEEF 10 Unmodified _PDTAWTQEEF_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2650146484375 2 612.264393 1222.51423 0.53002 0.00032451 -0.0020795 -1.2732E-06 0.52794 0.00032324 612.2644731448081 38.568 0.45164 38.568 38.339 38.79 0 84 26 5 0 0 0 0.095098 2 20636 20531;20636 47.749 21.481 1 68112000 + 44780 19503 29688 30427 52728;52729 52729 -0.08812366732468035 PDTAWTQEEF 10 Unmodified _PDTAWTQEEF_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2653198242188 2 612.264393 1222.51423 0.51842 0.00031741 0.21895 0.00013406 0.73737 0.00045146 612.2644132330657 43.9 0.44505 39.135 38.874 39.319 -4.7648 92 28 4 0 0 0 0.14923 2 26623 26623;26760 39.95 12.371 1 129430000 + 44781 19503 29688 30427 52730;52731 52730 -0.08812366732468035 PDTAWTQEEF 10 Unmodified _PDTAWTQEEF_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 612.264393 1222.51423 0.53002 0.00032451 -0.0020795 -1.2732E-06 0.52794 0.00032324 612.2644731448081 38.568 0.45164 38.568 38.339 38.79 0 0 0 NaN 47.749 84 26 5 NaN NaN NaN NaN 0 NaN NaN 0 68112000 + 44782 19503 29688 30427 -0.08812366732468035 PDTDDRHRIE 10 Unmodified _PDTDDRHRIE_ 0 0 0 nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF nc|ENSG00000173039|Q04206-2|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF nc|ENSG00000173039|Q04206-2|RELA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2982177734375 2 627.29709 1252.57963 NaN NaN NaN NaN NaN NaN NaN 74.172 1 74.172 73.672 74.672 0 0 0 0 0.7417 1 41279 41279 14.838 1.7958 1 44783 8281;14908 29689 30428 52732 52732 -0.03655952486747083 PDTEFRRNYQI 11 Unmodified _PDTEFRRNYQI_ 0 0 0 ENSG00000175664|ENST00000380473|TEX26 ENSG00000175664|ENST00000380473|TEX26 ENSG00000175664|ENST00000380473|TEX26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2394714355469 3 480.240635 1437.70008 0.16403 7.8775E-05 -0.33471 -0.00016074 -0.17067 -8.1964E-05 480.240430210635 28.74 0.16555 28.77 28.681 28.846 0.029566 11 6 3 0 0 0 0.74046 1 14991 14991 0.45452 0 1 1898800 44784 8536 29690 30429 52733 52733 -0.0012654449312776705 PDTELKRYF 9 Unmodified _PDTELKRYF_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000566751.5_1_16:89952312-89961474:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5524291992188 3 390.204751 1167.59242 -0.24264 -9.4678E-05 -1.8687 -0.00072917 -2.1113 -0.00082385 390.20357831213744 37.272 0.18172 37.294 37.216 37.398 0.021545 12 7 2 0 0 0 0.21473 1 19789 19789 2.4985 0 1 852290 44785 5296 29691 30430 52734 52734 0.01533110643413238 PDTGVAEPMKP 11 Unmodified _PDTGVAEPMKP_ 0 0 0 REV__nc|ENSG00000100813|Q9UKV3-5|ACIN1 REV__nc|ENSG00000100813|Q9UKV3-5|ACIN1 MSMS AL20221201_MKP_PDAC_01 4 381.1912231445312 3 381.190113 1140.54851 NaN NaN NaN NaN NaN NaN NaN 93.613 1 87.437 86.937 87.937 -6.1757 0 0 0 0.93669 1 61973 61973 2.2527 0 1 + 44786 29536 29692 30431 52735 52735 -0.016142418452318452 PDTLYEERECE 11 Unmodified _PDTLYEERECE_ 0 0 0 ENSG00000144229|ENST00000409968|THSD7B ENSG00000144229|ENST00000409968|THSD7B ENSG00000144229|ENST00000409968|THSD7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.8630065917969 3 461.862613 1382.56601 0.066836 3.0869E-05 -0.41932 -0.00019367 -0.35248 -0.0001628 461.86275966828674 19.946 0.43407 19.946 19.709 20.143 0 102 50 3 0 0 0 0.73115 1 9934 9934 0.45452 0 1 2177600 44787 5592 29693 30432 52736 52736 -0.10996991100864761 PDTQILLL 8 Unmodified _PDTQILLL_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7732543945312 2 456.773668 911.532783 NaN NaN NaN NaN NaN NaN NaN 85.559 1 85.057 84.557 85.557 -0.5015 0 0 0 0.83301 1 46825 46825 21.747 0 1 + 44788 22012 29694 30433 52737 52737 0.0734783970007129 PDTQILLLY 9 Unmodified _PDTQILLLY_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.3068237304688 2 538.305332 1074.59611 0.54642 0.00029414 0.5809 0.0003127 1.1273 0.00060685 538.305486363067 73.037 0.38898 73.037 72.84 73.229 0 29 17 3 0 0 0 0.20428 1 40708 40708 22.736 1.1993 1 923170 + 44789 22012 29695 30434 52738 52738 0.061797804173238546 PDTQILLLY 9 Unmodified _PDTQILLLY_ 0 0 0 REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM REV__nc|ENSG00000165478|Q14CZ8-2|HEPACAM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.305332 1074.59611 0.5695 0.00030656 -0.19834 -0.00010677 0.37115 0.00019979 538.3049065849867 73.491 0.40739 73.015 72.758 73.166 -0.47588 -0.011189 -0.00032836 NaN 22.736 34 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1055100 + 44790 22012 29695 30434 0.061797804173238546 PDTSRLRL 8 Unmodified _PDTSRLRL_ 0 0 0 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 ENSG00000148602|ENST00000372105|LRIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2775573730469 2 479.277441 956.540328 0.6634 0.00031795 0.80738 0.00038696 1.4708 0.00070491 479.2776162076519 71.866 0.62773 71.905 71.407 72.035 0.039024 41 29 2 0 0 0 0.80676 1 39399 39399 2.5775 0 1 1660200 44791 5947 29696 30435 52739 52739 0.06031992020314192 PDTVSTVGGAF 11 Unmodified _PDTVSTVGGAF_ 0 0 0 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 ENSG00000139832|ENST00000267328|RAB20 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.29833984375 2 525.758746 1049.50294 1.0483 0.00055118 -2.2526 -0.0011843 -1.2043 -0.00063317 525.7574512004668 57.481 0.27905 51.454 51.313 51.592 -6.0275 32 14 3 0 0 0 0.28752 1 36756 36756 13.906 1.3745 1 30522000 44792 5192 29697 30436 52740 52740 -0.01983144035943951 PDTWREWS 8 Unmodified _PDTWREWS_ 0 0 0 ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF ENSG00000113594|ENST00000453190|LIFR ENSG00000113594|ENST00000453190|LIFR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.2727661132812 3 359.498046 1075.47231 0.19382 6.9679E-05 0.72269 0.00025981 0.91652 0.00032949 359.4986020502723 78.903 0.31609 78.417 78.213 78.529 -0.48595 24 12 3 0 0 0 8.7369 1 43153 43153 0.40072 0 1 787130 44793 2979 29698 30437 52741 52741 -0.06240877630330033 PDVASEFVKEF 11 Unmodified _PDVASEFVKEF_ 0 0 0 REV__ENST00000471669.1_1_9:4646457-4666250:-|nuORF REV__ENST00000471669.1_1_9:4646457-4666250:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.3118896484375 2 634.313886 1266.61322 NaN NaN NaN NaN NaN NaN NaN 56.082 1 50.109 49.609 50.609 -5.9735 0 0 0 0.63856 1 35757 35757 19.362 2.249 1 + 44794 18528 29699 30438 52742 52742 -0.009423437675877722 PDVEELCLFT 10 Unmodified _PDVEELCLFT_ 0 0 0 REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF REV__ENST00000574094.5_1_16:16275679-16317348:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5381774902344 3 389.186369 1164.53728 -0.34904 -0.00013584 -2.8445 -0.001107 -3.1936 -0.0012429 389.18476866117885 23.159 0.26837 23.159 22.974 23.243 0 22 13 2 0 0 0 0.23986 1 11756 11756 0.69767 0.19171 1 568260 + 44795 17888 29700 30439 52743 52743 -0.03841063939375999 PDVESIDLSIT 11 Unmodified _PDVESIDLSIT_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2953491210938 2 594.803351 1187.59215 0.56871 0.00033827 1.6919 0.0010064 2.2606 0.0013446 594.8045510571345 66.83 0.27396 66.848 66.733 67.007 0.018028 17 12 2 0 0 0 0.29134 1 36618 36618 12.241 6.0349 1 2461600 + 44796 21226 29701 30440 52744 52744 0.00585646132913098 PDVGRARL 8 Unmodified _PDVGRARL_ 0 0 0 REV__nc|ENSG00000106327|Q9UP52-2|TFR2 REV__nc|ENSG00000106327|Q9UP52-2|TFR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.5438537597656 2 442.259051 882.503549 1.3603 0.00060162 0.2169 9.5927E-05 1.5772 0.00069755 442.2592584454138 37.303 0.34965 33.02 32.827 33.177 -4.2835 30 20 2 0 0 0 8.7369 1 21752 21752 2.0598 1.3694 1 8216400 + 44797 18499 29702 30441 52745 52745 0.0575974019440082 PDVIALTVAF 10 Unmodified _PDVIALTVAF_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2997436523438 2 523.30005 1044.58555 NaN NaN NaN NaN NaN NaN NaN 94.602 1 94.181 93.681 94.681 -0.42044 0 0 0 0.99091 1 51682 51682 1.6526 0.85899 1 44798 7868 29703 30442 52746 52746 0.06503797762820795 PDVITKFEL 9 Unmodified _PDVITKFEL_ 0 0 0 nc|ENSG00000116120|Q9NSD9-2|FARSB;ENSG00000116120|ENST00000281828|FARSB nc|ENSG00000116120|Q9NSD9-2|FARSB nc|ENSG00000116120|Q9NSD9-2|FARSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2987670898438 2 531.297507 1060.58046 0.36367 0.00019322 -1.054 -0.00055998 -0.69031 -0.00036676 531.2971272796867 91.568 0.25936 91.087 90.857 91.116 -0.48093 18 12 2 0 0 0 0.55144 1 49982 49982 4.3292 0 1 822130 44799 3193 29704 30443 52747 52747 0.05259493900234702 PDVKLTEVF 9 Unmodified _PDVKLTEVF_ 0 0 0 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2532348632812 2 524.289682 1046.56481 0.67041 0.00035149 -0.21369 -0.00011203 0.45673 0.00023946 524.2893985171123 66.994 0.25395 66.994 66.878 67.132 0 15 11 2 0 0 0 0.54444 1 37303 37303 4.756 0 1 1121500 44800 5693 29705 30444 52748 52748 0.043392073831682865 PDVLETMAL 9 Unmodified _PDVLETMAL_ 0 0 0 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 ENSG00000047365|ENST00000303965|ARAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.761474609375 2 494.754618 987.494683 0.5054 0.00025005 -2.957 -0.001463 -2.4516 -0.001213 494.75292300717535 73.929 0.5463 73.929 73.591 74.137 0 36 23 2 0 0 0 0.41742 1 41255 41255 11.64 3.7301 1 1041100 44801 682 29706 30445 52749 52749 0.0004358572306273345 PDVLHSLLSS 10 Unmodified _PDVLHSLLSS_ 0 0 0 REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.290771484375 2 534.290214 1066.56587 0.36417 0.00019457 0.97893 0.00052304 1.3431 0.00071761 534.2905588480152 92.892 0.49564 92.434 92.211 92.707 -0.4574 69 25 4 0 0 0 0.38092 1 50812 50812 22.736 2.3217 1 16475000 + 44802 27500 29707 30446 52750 52750 0.035254217521242026 PDVNEEQKI 9 Unmodified _PDVNEEQKI_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000116254|ENST00000262450|CHD5 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2706298828125 2 536.269478 1070.5244 0.24853 0.00013328 1.551 0.00083177 1.7996 0.00096505 536.2700343402381 69.703 0.24031 69.703 69.598 69.839 0 17 11 2 0 0 0 0.45045 1 38834 38834 10.074 0.6908 1 673470 + 44803 29773;19033 29708 30447 52751 52751 -0.008037590072262901 PDVNEEQKI 9 Unmodified _PDVNEEQKI_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000116254|ENST00000262450|CHD5 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.269478 1070.5244 0.24853 0.00013328 1.551 0.00083177 1.7996 0.00096505 536.2700343402381 69.703 0.24031 69.703 69.598 69.839 0 -0.044368 -0.00029774 NaN 10.074 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 673470 + 44804 29773;19033 29708 30447 -0.008037590072262901 PDVPNGALSYL 11 Unmodified _PDVPNGALSYL_ 0 0 0 REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF REV__ENST00000395756.5_1_17:17715938-17721122:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.29541015625 2 573.295496 1144.57644 NaN NaN NaN NaN NaN NaN NaN 79.749 1 79.26 78.76 79.76 -0.48932 0 0 0 0.81193 1 43682 43682 11.495 0 1 + 44805 17513 29709 30448 52752 52752 0.00993404406517584 PDVPRELTE 9 Unmodified _PDVPRELTE_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2725219726562 2 528.272021 1054.52949 0.40482 0.00021385 0.85004 0.00044905 1.2549 0.00066291 528.272178813133 76.99 0.55704 76.99 76.708 77.265 0 99 33 4 0 0 0 0.25681 2 42778 42778;42882 19.257 0 1 66573000 + 44806 24387 29710 30449 52753;52754 52753 0.0044054485538254085 PDVSYGTTSY 10 Unmodified _PDVSYGTTSY_ 0 0 0 REV__ENSG00000009709|ENST00000420770|PAX7 REV__ENSG00000009709|ENST00000420770|PAX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.1646423339844 3 363.82935 1088.46622 -0.66706 -0.00024269 0.93866 0.00034151 0.2716 9.8816E-05 363.83052502505797 77.485 0.38887 77.002 76.827 77.215 -0.4826 56 18 4 0 0 0 0.69377 1 42414 42414 1.7423 0 1 4315000 + 44807 17035 29711 30450 52755 52755 -0.07447440652504156 PDVTIFVPQ 9 Unmodified _PDVTIFVPQ_ 0 0 0 REV__nc|ENSG00000284194|O43819|SCO2 REV__nc|ENSG00000284194|O43819|SCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2778625488281 2 508.276575 1014.5386 0.37654 0.00019139 -1.8913 -0.00096131 -1.5148 -0.00076992 508.27619341551286 76.936 0.50696 76.936 76.708 77.215 0 78 31 3 0 0 0 0.095405 2 42732 42732;42831 34.102 3.0875 1 9441200 + 44808 30011 29712 30451 52756;52757 52756 0.03190938211707817 PDVTIFVPQ 9 Unmodified _PDVTIFVPQ_ 0 0 0 REV__nc|ENSG00000284194|O43819|SCO2 REV__nc|ENSG00000284194|O43819|SCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2768859863281 2 508.276575 1014.5386 -0.94454 -0.00048009 0.27198 0.00013824 -0.67256 -0.00034184 508.2768814508718 77.474 0.39633 76.992 76.848 77.244 -0.4826 37 18 3 0 0 0 0.14602 1 42389 42389 28.487 3.0875 1 6467800 + 44809 30011 29712 30451 52758 52758 0.03190938211707817 PDVTIFVPQ 9 Unmodified _PDVTIFVPQ_ 0 0 0 REV__nc|ENSG00000284194|O43819|SCO2 REV__nc|ENSG00000284194|O43819|SCO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2761840820312 2 508.276575 1014.5386 0.50676 0.00025758 -1.9997 -0.0010164 -1.493 -0.00075884 508.27612668080747 85.708 0.55159 79.533 79.277 79.829 -6.1757 53 31 2 0 0 0 0.14602 1 56449 56449 28.487 3.0875 1 44520000 + 44810 30011 29712 30451 52759 52759 0.03190938211707817 PDVTIGIPFG 10 Unmodified _PDVTIGIPFG_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2762145996094 2 508.276575 1014.5386 -0.94454 -0.00048009 0.27198 0.00013824 -0.67256 -0.00034184 508.2768814508718 77.474 0.39633 76.992 76.848 77.244 -0.4826 37 18 3 0 0 0 0.2178 1 42494 42494 32.305 3.8186 1 6467800 + 44811 17692 29713 30452 52760 52760 0.03190938211707817 PDVTIGIPFG 10 Unmodified _PDVTIGIPFG_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2770080566406 2 508.276575 1014.5386 0.50676 0.00025758 -1.9997 -0.0010164 -1.493 -0.00075884 508.27612668080747 85.708 0.55159 79.533 79.277 79.829 -6.1757 53 31 2 0 0 0 0.14917 1 56579 56579 39.957 1.7818 1 44520000 + 44812 17692 29713 30452 52761 52761 0.03190938211707817 PDVTIGIPFG 10 Unmodified _PDVTIGIPFG_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.276575 1014.5386 -0.94454 -0.00048009 0.27198 0.00013824 -0.67256 -0.00034184 508.2768814508718 77.474 0.39633 76.992 76.848 77.244 -0.4826 0 0 NaN 32.305 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 6467800 + 44813 17692 29713 30452 0.03190938211707817 PDVTLWDLP 9 Unmodified _PDVTLWDLP_ 0 0 0 ENSG00000124449|ENST00000244314|IRGC ENSG00000124449|ENST00000244314|IRGC ENSG00000124449|ENST00000244314|IRGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2738037109375 2 528.274032 1054.53351 0.10098 5.3347E-05 -1.3789 -0.00072842 -1.2779 -0.00067507 528.2730650261204 76.999 0.35754 77.049 76.889 77.246 0.050102 28 14 3 0 0 0 0.10734 1 42499 42499 32.305 8.2849 1 3495800 44814 3786 29714 30453 52762 52762 0.008426343491009902 PDVVRARKRV 10 Unmodified _PDVVRARKRV_ 0 0 0 ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E ENSG00000087128|ENST00000305363|TMPRSS11E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2509155273438 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 81.588 1 81.648 81.148 82.148 0.059929 0 0 0 0.9997 1 45118 45118 0.69767 0 1 44815 1456 29715 30454 52763 52763 0.14134698402403956 PDVYKYEPKF 10 Unmodified _PDVYKYEPKF_ 0 0 0 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 REV__nc|ENSG00000158014|Q9BRI3-1|SLC30A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8910827636719 3 429.22029 1284.63904 0.13467 5.7802E-05 1.7333 0.00074396 1.868 0.00080176 429.2208427916247 55.335 0.31856 55.267 55.097 55.415 -0.068737 29 15 3 0 0 0 0.24005 1 30073 30073 0.77653 0 1 2004100 + 44816 21410 29716 30455 52764 52764 0.008105504746936276 PDWLASFNIY 10 Unmodified _PDWLASFNIY_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8851623535156 3 409.201118 1224.58152 -0.63602 -0.00026026 1.8494 0.00075679 1.2134 0.00049653 409.53569019031295 26.75 0.10413 26.75 26.699 26.803 0 6 4 2 0 0 0 0.23896 1 13776 13776 1.7423 0 1 514340 + 44817 19262 29717 30456 52765 52765 -0.021782917308428296 PDWRWGHMQMI 11 Unmodified _PDWRWGHMQMI_ 0 0 0 REV__ENST00000397289.6_1_22:36545187-36556848:-|nuORF REV__ENST00000397289.6_1_22:36545187-36556848:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2261657714844 3 486.225275 1455.65399 0.27946 0.00013588 0.78719 0.00038275 1.0667 0.00051864 486.226048178345 50.323 0.42609 50.323 50.114 50.54 0 33 19 2 0 0 0 0.69316 1 27737 27737 2.2527 0 1 5166900 + 44818 25778 29718 30457 52766 52766 -0.0556060420058202 PDYDEQSELF 10 Unmodified _PDYDEQSELF_ 0 0 0 REV__nc|ENSG00000101199|Q8N6T3-5|ARFGAP1 REV__nc|ENSG00000101199|Q8N6T3-5|ARFGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.8433837890625 3 414.843548 1241.50881 NaN NaN NaN NaN NaN NaN NaN 74.338 1 74.382 73.882 74.882 0.043983 0 0 0 0.98914 1 40977 40977 0.77653 0 1 + 44819 18145 29719 30458 52767 52767 -0.10228090314944893 PDYEDVGLGL 10 Unmodified _PDYEDVGLGL_ 0 0 0 REV__nc|ENSG00000205955|Q58FG0|HSP90AA5P REV__nc|ENSG00000205955|Q58FG0|HSP90AA5P MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8428039550781 3 359.841478 1076.50261 1.778 0.0006398 0.68511 0.00024653 2.4631 0.00088634 359.8424000181735 95.256 0.68987 89.08 88.677 89.367 -6.1757 70 38 3 0 0 0 0.42068 1 63117 63117 17.443 0 1 8387700 + 44820 29919 29720 30459 52768 52768 -0.03258563755798605 PDYGFMMF 8 Unmodified _PDYGFMMF_ 0 0 0 REV__ENSG00000204022|ENST00000371939|LIPJ REV__ENSG00000204022|ENST00000371939|LIPJ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1007.57373046875 1 1007.40014 1006.39286 0.42332 0.00042645 -1.1462 -0.0011547 -0.72292 -0.00072827 1007.4021087197874 33.679 0.11996 33.708 33.625 33.745 0.028934 7 4 2 0 0 0 8.7369 1 17695 17695 0.79363 0 1 798200 + 44821 24136 29721 30460 52769 52769 -0.11007983900333329 PDYHMLSAL 9 Unmodified _PDYHMLSAL_ 0 0 0 REV__ENSG00000185271|ENST00000636854|KLHL33 REV__ENSG00000185271|ENST00000636854|KLHL33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.249267578125 2 523.75241 1045.49027 0.55151 0.00028885 0.44345 0.00023226 0.99496 0.00052111 523.7526218417987 37.14 0.29881 37.14 36.997 37.296 0 37 14 3 0 0 0 0.49272 1 19815 19815 7.9102 1.187 1 11306000 + 44822 23488 29722 30461 52770 52770 -0.03065878699840141 PDYIIPGV 8 Unmodified _PDYIIPGV_ 0 0 0 REV__ENSG00000167363|ENST00000300784|FN3K REV__ENSG00000167363|ENST00000300784|FN3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.48095703125 1 873.471646 872.46437 0.13971 0.00012203 0.30804 0.00026907 0.44775 0.0003911 873.4718151955251 93.224 0.97106 87.048 86.712 87.684 -6.1757 166 65 3 0 0 0 0.67481 1 61555 61555 19.439 2.4967 1 188200000 + 44823 22205 29723 30462 52771 52771 0.023035951202018623 PDYKHTRLF 9 Unmodified _PDYKHTRLF_ 0 0 0 REV__nc|ENSG00000096088|P20142-2|PGC REV__nc|ENSG00000096088|P20142-2|PGC MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2115478515625 3 392.876857 1175.60874 1.422 0.00055866 1.117 0.00043884 2.539 0.0009975 392.87736818437554 20.987 0.41752 18.294 18.036 18.453 -2.693 73 24 4 0 0 0 0.2289 2 11110 11110;11125 20.581 7.5385 1 20278000 + 44824 17958 29724 30463 52772;52773 52772 0.02796236600170232 PDYKHTRLF 9 Unmodified _PDYKHTRLF_ 0 0 0 REV__nc|ENSG00000096088|P20142-2|PGC REV__nc|ENSG00000096088|P20142-2|PGC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.2115478515625 3 392.876857 1175.60874 1.422 0.00055866 1.117 0.00043884 2.539 0.0009975 392.87736818437554 20.987 0.41752 18.294 18.036 18.453 -2.693 73 24 4 0 0 0 0.18366 1 11110 11110 20.581 7.5385 1 20278000 + 44825 17958 29724 30463 52774 52774 0.02796236600170232 PDYKYRPRRK 10 Unmodified _PDYKYRPRRK_ 0 0 0 nc|ENSG00000129194|O60248-2|SOX15;ENSG00000129194|ENST00000250055|SOX15;ENSG00000168875|ENST00000306087|SOX14;ENSG00000125285|ENST00000376945|SOX21;ENSG00000181449|ENST00000325404|SOX2;ENSG00000182968|ENST00000330949|SOX1;ENSG00000134595|ENST00000370536|SOX3 nc|ENSG00000129194|O60248-2|SOX15 nc|ENSG00000129194|O60248-2|SOX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2610778808594 3 460.261594 1377.76295 -0.13134 -6.0451E-05 -0.99328 -0.00045717 -1.1246 -0.00051762 460.2610914070693 28.648 0.22184 28.648 28.52 28.742 0 22 10 3 0 0 0 0.65023 1 14788 14788 8.4443 1.8209 1 5855400 44826 3837 29725 30464 52775 52775 0.0891806608551633 PDYKYRPRRK 10 Unmodified _PDYKYRPRRK_ 0 0 0 nc|ENSG00000129194|O60248-2|SOX15;ENSG00000129194|ENST00000250055|SOX15;ENSG00000168875|ENST00000306087|SOX14;ENSG00000125285|ENST00000376945|SOX21;ENSG00000181449|ENST00000325404|SOX2;ENSG00000182968|ENST00000330949|SOX1;ENSG00000134595|ENST00000370536|SOX3 nc|ENSG00000129194|O60248-2|SOX15 nc|ENSG00000129194|O60248-2|SOX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2621459960938 3 460.261594 1377.76295 0.31592 0.00014541 0.18735 8.6228E-05 0.50327 0.00023163 460.2617808531885 28.442 0.26256 28.472 28.332 28.595 0.029564 32 10 4 0 0 0 0.60478 1 14785 14785 10.899 2.1472 1 19049000 44827 3837 29725 30464 52776 52776 0.0891806608551633 PEAASLLLL 9 Unmodified _PEAASLLLL_ 0 0 0 REV__nc|ENSG00000007312|P40259-3|CD79B REV__nc|ENSG00000007312|P40259-3|CD79B MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.781494140625 2 463.781493 925.548434 1.2549 0.00058199 0.71797 0.00033298 1.9729 0.00091497 463.7815834380401 96.817 0.16946 90.641 90.523 90.693 -6.1757 14 9 2 0 0 0 0.06187 1 64140 64140 42.095 0 1 7100400 + 44828 29481 29726 30465 52777 52777 0.082681262171036 PEAGLRCDELL 11 Unmodified _PEAGLRCDELL_ 0 0 0 REV__nc|ENSG00000039600|O94993-2|SOX30 REV__nc|ENSG00000039600|O94993-2|SOX30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3065185546875 2 608.305538 1214.59652 1.5329 0.00093248 0.068121 4.1439E-05 1.601 0.00097392 608.3053618713849 92.34 0.76141 92.37 91.993 92.755 0.03019 72 28 3 0 0 0 0.13715 1 51263 51263 38.176 2.0485 1 8872700 + 44829 17189 29727 30466 52778 52778 -0.0021916792516094574 PEAGLRCDELL 11 Unmodified _PEAGLRCDELL_ 0 0 0 REV__nc|ENSG00000039600|O94993-2|SOX30 REV__nc|ENSG00000039600|O94993-2|SOX30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3048095703125 2 608.305538 1214.59652 1.1107 0.00067567 0.58743 0.00035734 1.6982 0.001033 608.3055735933339 100.07 0.27579 93.899 93.769 94.044 -6.1757 46 17 4 0 0 0 0.13715 1 66799 66799 38.176 2.0485 1 157810000 + 44830 17189 29727 30466 52779 52779 -0.0021916792516094574 PEAGLRCDELL 11 Unmodified _PEAGLRCDELL_ 0 0 0 REV__nc|ENSG00000039600|O94993-2|SOX30 REV__nc|ENSG00000039600|O94993-2|SOX30 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.305538 1214.59652 2.0337 0.0012371 1.4019 0.00085276 3.4356 0.0020899 608.306542005525 94.109 0.26038 94.124 93.978 94.239 0.014244 0.11225 0.000871 NaN 38.176 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1079100 + 44831 17189 29727 30466 -0.0021916792516094574 PEAHGEEL 8 Unmodified _PEAHGEEL_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2039184570312 2 441.203607 880.392661 -0.12071 -5.3256E-05 1.1788 0.00052009 1.0581 0.00046683 441.2043270712485 22.727 1.1651 22.727 22.324 23.489 0 123 59 3 0 0 0 0.80143 2 11768 11768;11928 5.7604 0 1 3567600 44832 4747 29728 30467 52780;52781 52780 -0.052319443043188585 PEAKKPRL 8 Unmodified _PEAKKPRL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ENST00000485710.5_1_1:1247522-1249186:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7934265136719 2 469.792727 937.5709 0.049953 2.3468E-05 -0.026252 -1.2333E-05 0.023701 1.1135E-05 469.7926712251721 23.088 0.2139 20.309 20.132 20.346 -2.7784 17 12 2 0 0 0 0.1875 1 12446 12446 74.929 30.522 1 6135000 44833 3985 29729 30468 52782 52782 0.09961770405368497 PEALWVTVG 9 Unmodified _PEALWVTVG_ 0 0 0 ENST00000557951.1_1_15:73996325-74000993:+|nuORF;nc|ENSG00000103855|Q5ZPR3-2|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276 ENST00000557951.1_1_15:73996325-74000993:+|nuORF ENST00000557951.1_1_15:73996325-74000993:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 971.5182495117188 1 971.519659 970.512382 0.22621 0.00021977 0.96596 0.00093845 1.1922 0.0011582 971.5207460393455 72.447 0.27667 72.447 72.334 72.611 0 17 10 2 0 0 0 0.5029 1 40423 40423 7.2892 1.0834 1 861040 44834 2163 29730 30469 52783 52783 0.025946690402406603 PEAPPAAPAP 10 Unmodified _PEAPPAAPAP_ 0 0 0 ENSG00000132821|ENST00000373461|VSTM2L ENSG00000132821|ENST00000373461|VSTM2L ENSG00000132821|ENST00000373461|VSTM2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 917.47509765625 1 917.472709 916.465432 0.095006 8.7165E-05 1.4484 0.0013289 1.5434 0.001416 917.4740259360638 63.671 0.25823 63.671 63.543 63.801 0 16 10 2 0 0 0 0.69064 1 35478 35478 3.9444 0 1 639000 44835 4454 29731 30470 52784 52784 0.0038580948909157087 PEARDGWHY 9 Unmodified _PEARDGWHY_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2305908203125 2 565.75433 1129.49411 0.28371 0.00016051 2.6765 0.0015142 2.9602 0.0016747 566.2573138117356 52.6 0.30578 52.6 52.467 52.773 0 19 11 2 0 0 0 0.19613 1 29174 29174 7.9102 0 1 3988500 44836 8546;15522 29732 30471 52785 52785 -0.0654607288176976 PEATWKTYL 9 Unmodified _PEATWKTYL_ 0 0 0 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7842407226562 2 554.787307 1107.56006 -0.80549 -0.00044688 -3.7933 -0.0021044 -4.5987 -0.0025513 554.7857209236632 32.572 0.16392 32.572 32.495 32.658 0 11 8 2 0 0 0 0.25681 1 17050 17050 19.257 0 1 1801200 44837 5177 29733 30472 52786 52786 0.010583232404314913 PEATWKTYL 9 Unmodified _PEATWKTYL_ 0 0 0 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 554.787307 1107.56006 0.0011305 6.2719E-07 -2.8445 -0.0015781 -2.8434 -0.0015775 554.785666119764 32.575 0.1598 32.446 32.392 32.552 -0.12915 -0.062797 0.00032179 NaN 19.257 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1084600 44838 5177 29733 30472 0.010583232404314913 PEAVGHQTF 9 Unmodified _PEAVGHQTF_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS AL20221201_MKP_PDAC_01 4 493.2423400878906 2 493.240524 984.466495 NaN NaN NaN NaN NaN NaN NaN 78.096 1 71.921 71.421 72.421 -6.1757 0 0 0 0.53226 1 51106 51106 14.838 0.93222 1 + 44839 17243 29734 30473 52787 52787 -0.02635976142016716 PEAVLALYN 9 Unmodified _PEAVLALYN_ 0 0 0 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 ENSG00000105329|ENST00000221930|TGFB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.53173828125 1 989.530224 988.522947 -0.079356 -7.8526E-05 0.8973 0.00088791 0.81795 0.00080938 989.5313342202644 65.191 0.33324 65.191 65.013 65.347 0 17 13 2 0 0 0 0.51218 1 36430 36430 6.7232 0.99131 1 1376400 44840 2305 29735 30474 52788 52788 0.028226516946460833 PEAYKPTVY 9 Unmodified _PEAYKPTVY_ 0 0 0 ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2755126953125 2 534.274032 1066.53351 0.70012 0.00037406 1.0771 0.00057549 1.7773 0.00094955 534.2744682371282 81.471 0.52357 80.978 80.792 81.316 -0.49247 42 21 3 0 0 0 0.32871 1 44568 44568 15.847 5.0233 1 2134800 44841 7761 29736 30475 52789 52789 0.0029063434908493946 PEAYKPTVY 9 Unmodified _PEAYKPTVY_ 0 0 0 ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH ENSG00000168421|ENST00000381799|RHOH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.274032 1066.53351 0.29068 0.0001553 0.47093 0.00025161 0.76161 0.00040691 534.2744943148788 80.989 0.22856 80.989 80.817 81.046 0 0.0051354 -0.00042825 NaN 15.847 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 469560 44842 7761 29736 30475 0.0029063434908493946 PECQHGGC 8 Unmodified _PECQHGGC_ 0 0 0 ENST00000431520.5_1_2:213886718-213886829:-|nuORF;ENST00000342002.6_1_2:213878639-213886829:-|nuORF ENST00000431520.5_1_2:213886718-213886829:-|nuORF ENST00000431520.5_1_2:213886718-213886829:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.6500244140625 2 415.64963 829.284707 NaN NaN NaN NaN NaN NaN NaN 98.704 1 98.675 98.175 99.175 -0.028282 0 0 0 0.97444 1 54816 54816 0.69038 0 1 44843 11976 29737 30476 52790 52790 -0.1367635543090273 PEDEFSIKV 9 Unmodified _PEDEFSIKV_ 0 0 0 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7408447265625 2 532.268947 1062.52334 0.32342 0.00017215 -2.9459 -0.001568 -2.6225 -0.0013959 532.7678410454206 63.088 0.32955 63.088 62.942 63.272 0 24 13 3 0 0 0 0.20727 1 35212 35212 7.9102 0 1 622450 + 44844 17158 29738 30477 52791 52791 -0.005419733761300449 PEDETSNSAW 10 Unmodified _PEDETSNSAW_ 0 0 0 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2303466796875 2 568.23055 1134.44655 0.33268 0.00018904 -1.0328 -0.00058689 -0.70015 -0.00039785 568.2299759683664 92.595 0.38467 92.595 92.395 92.78 0 109 24 6 0 0 0 0.62068 1 51221 51221 10.074 0 1 3004600 44845 10247 29739 30478 52792 52792 -0.11529816663278325 PEDETSNSAW 10 Unmodified _PEDETSNSAW_ 0 0 0 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 ENSG00000204175|ENST00000374314|GPRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2304077148438 2 568.23055 1134.44655 0.57466 0.00032654 -1.1036 -0.00062708 -0.52891 -0.00030054 568.2301222297348 93.105 0.49482 92.647 92.462 92.957 -0.4574 110 24 7 0 0 0 0.62068 1 50925 50925 10.074 1.3285 1 7441600 44846 10247 29739 30478 52793 52793 -0.11529816663278325 PEDFCYEC 8 Unmodified _PEDFCYEC_ 0 0 0 REV__nc|ENSG00000183765|O96017-10|CHEK2 REV__nc|ENSG00000183765|O96017-10|CHEK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.1702270507812 2 503.170061 1004.32557 0.58441 0.00029406 -1.2562 -0.00063209 -0.6718 -0.00033803 503.16946830902486 38.451 0.33385 34.082 33.9 34.234 -4.3689 44 20 3 0 0 0 0.80232 1 22643 22643 5.2307 3.3864 1 27872000 + 44847 29843 29740 30479 52794 52794 -0.17642058901958535 PEDFLKKYD 9 Unmodified _PEDFLKKYD_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7620849609375 2 577.790047 1153.56554 0.46193 0.0002669 -0.70485 -0.00040726 -0.24292 -0.00014036 577.7896691987744 68.066 0.22223 68.066 68.043 68.266 0 19 10 2 0 0 0 0.209 1 38024 38024 7.2892 0.56607 1 548110 44848 4231 29741 30480 52795 52795 -0.0050999796776523 PEDGWWFI 8 Unmodified _PEDGWWFI_ 0 0 0 REV__ENSG00000123066|ENST00000281928|MED13L REV__ENSG00000123066|ENST00000281928|MED13L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.4970092773438 3 350.495754 1048.46543 NaN NaN NaN NaN NaN NaN NaN 90.957 1 90.462 89.962 90.962 -0.49457 0 0 0 0.97348 1 49724 49724 3.9444 1.2092 1 + 44849 19367 29742 30481 52796 52796 -0.0568619051089172 PEDIKKAY 8 Unmodified _PEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7617797851562 2 482.260925 962.507297 -0.25744 -0.00012416 -0.39333 -0.00018969 -0.65078 -0.00031384 482.26080580726546 19.943 0.158 19.943 19.831 19.989 0 32 19 2 0 0 0 0.55032 1 9970 9970 30.225 24.019 1 1085900 44850 2387 29743 30482 52797 52797 0.02454365177618456 PEDIKKAY 8 Unmodified _PEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.7177734375 2 482.260925 962.507297 0.81823 0.0003946 -0.20244 -9.7628E-05 0.61579 0.00029697 482.26081026695016 22.21 0.24413 19.475 19.354 19.598 -2.7348 20 12 2 0 0 0 8.7369 1 11955 11955 41.84 28.797 1 1891000 44851 2387 29743 30482 52798 52798 0.02454365177618456 PEDKLILL 8 Unmodified _PEDKLILL_ 0 0 0 ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7891845703125 2 470.789318 939.564084 -0.21745 -0.00010237 1.4888 0.00070093 1.2714 0.00059856 470.7897117422377 76.926 0.30728 76.447 76.276 76.584 -0.47945 18 13 2 0 0 0 0.80624 1 42170 42170 2.8892 0 1 641100 44852 14462 29744 30483 52799 52799 0.09188412734147278 PEDLDIIQ 8 Unmodified _PEDLDIIQ_ 0 0 0 ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 ENSG00000006704|ENST00000424337|GTF2IRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7430725097656 2 471.742565 941.470577 0.54082 0.00025513 0.41577 0.00019614 0.95659 0.00045127 471.74266413281464 46.636 0.19517 46.636 46.523 46.718 0 14 8 2 0 0 0 0.48669 1 25510 25510 36.044 0 1 1511200 44853 346 29745 30484 52800 52800 -0.002499314389410756 PEDLSLSKQ 9 Unmodified _PEDLSLSKQ_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21;nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MSMS AL20221201_MKP_PDAC_01 4 508.76904296875 2 508.766571 1015.51859 NaN NaN NaN NaN NaN NaN NaN 92.449 1 86.273 85.773 86.773 -6.1757 0 0 0 0.16996 1 61138 61138 34.402 0.29928 1 44854 8311 29746 30485 52801 52801 0.011451424811070865 PEDPQVNQF 9 Unmodified _PEDPQVNQF_ 0 0 0 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.5033264160156 3 358.501456 1072.48254 0.3681 0.00013197 3.4445 0.0012349 3.8126 0.0013668 358.5031714402302 45.88 0.17112 45.88 45.768 45.939 0 10 8 2 0 0 0 0.49272 1 25060 25060 4.897 1.0207 1 2582200 + 44855 20790 29747 30486 52802 52802 -0.05080314695760535 PEDPQVNQF 9 Unmodified _PEDPQVNQF_ 0 0 0 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 REV__nc|ENSG00000145734|A6H8Y1-4|BDP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2467041015625 2 537.248546 1072.48254 NaN NaN NaN NaN NaN NaN NaN 85.542 1 85.041 84.541 85.541 -0.5015 0 0 0 0.7453 1 46815 46815 7.9102 0.62092 1 + 44856 20790 29747 30486 52803 52803 -0.05080314695760535 PEDQPPAV 8 Unmodified _PEDQPPAV_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;ENST00000332954.8_1_11:16810636-16813269:-|nuORF;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4102783203125 1 852.409774 851.402498 0.68375 0.00058284 -0.17263 -0.00014715 0.51112 0.00043568 852.4096413032817 54.306 0.33216 54.306 54.173 54.505 0 20 14 2 0 0 0 0.75262 1 30236 30236 12.532 0.89125 1 946840 44857 7520;14803 29748 30487 52804 52804 -0.029147562989578546 PEDSLWPKI 9 Unmodified _PEDSLWPKI_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2 ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7633666992188 2 542.787307 1083.56006 0.17931 9.7328E-05 0.43126 0.00023408 0.61057 0.00033141 542.7876591153005 61.683 0.20215 61.683 61.572 61.775 0 15 8 2 0 0 0 0.16785 1 34373 34373 16.942 6.1184 1 744090 44858 6106 29749 30488 52805 52805 0.02162323240418118 PEDTGSSSYAA 11 Unmodified _PEDTGSSSYAA_ 0 0 0 REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7633666992188 2 542.725101 1083.43565 0.17494 9.4944E-05 -2.9446 -0.0015981 -2.7696 -0.0015032 542.7236351961948 61.692 0.20215 61.692 61.572 61.775 0 15 8 3 0 0 0 0.28226 1 34373 34373 12.241 5.5175 1 1077900 + 44859 27860 29750 30489 52806 52806 -0.10273219037549097 PEDVAKMGI 9 Unmodified _PEDVAKMGI_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1;ENST00000490438.1_1_9:95050027-95055918:-|nuORF ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2478332519531 2 480.24696 958.479368 0.17341 8.3277E-05 0.95638 0.0004593 1.1298 0.00054257 480.2471756087754 65.229 0.35295 65.229 64.994 65.347 0 18 14 2 0 0 0 0.43463 1 36291 36291 10.824 2.2306 1 822540 44860 9795 29751 30490 52807 52807 -0.0015328107413097314 PEDVDEVQI 9 Unmodified _PEDVDEVQI_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.249267578125 2 522.248212 1042.48187 -0.083422 -4.3567E-05 1.565 0.00081734 1.4816 0.00077378 522.2490332001126 38.504 0.27715 38.217 38.026 38.303 -0.28687 27 12 3 0 0 0 0.070838 1 20240 20240 39.957 0 1 4590400 + 44861 17502 29752 30491 52808 52808 -0.037671541354711735 PEDWEGFQHT 10 Unmodified _PEDWEGFQHT_ 0 0 0 ENSG00000181323|ENST00000323675|SPEM1 ENSG00000181323|ENST00000323675|SPEM1 ENSG00000181323|ENST00000323675|SPEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.8443908691406 3 415.843882 1244.50982 0.91351 0.00037988 -0.23949 -9.9591E-05 0.67402 0.00028029 415.84337600753514 18.257 0.11586 15.635 15.594 15.709 -2.6215 9 6 2 0 0 0 0.6966 1 9630 9630 1.5923 0 1 1653600 44862 8964 29753 30492 52809 52809 -0.10265831155402338 PEDYHLAPL 9 Unmodified _PEDYHLAPL_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7657470703125 2 527.763832 1053.51311 NaN NaN NaN NaN NaN NaN NaN 56.957 1 56.957 56.457 57.457 0 0 0 0 0.6032 1 31689 31689 12.532 0 1 + 44863 18066 29754 30493 52810 52810 -0.011505363107289668 PEEAPYKT 8 Unmodified _PEEAPYKT_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4515380859375 1 934.451639 933.444362 0.35232 0.00032923 -0.64026 -0.0005983 -0.28794 -0.00026907 934.450612207945 58.948 0.29411 58.948 58.829 59.123 0 19 12 2 0 0 0 0.78849 1 32838 32838 9.3474 0 1 1552100 + 44864 19249 29755 30494 52811 52811 -0.025022006104450156 PEEDEWQI 8 Unmodified _PEEDEWQI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2260131835938 2 523.227279 1044.44001 0.57117 0.00029885 -1.97 -0.0010308 -1.3988 -0.00073192 523.2260021275323 72.626 0.37108 72.626 72.408 72.779 0 29 16 2 0 0 0 0.80143 1 40365 40365 5.7604 0.52976 1 2232200 44865 6400 29756 30495 52812 52812 -0.08043709823982681 PEEDKKTY 8 Unmodified _PEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2496643066406 2 505.245472 1008.47639 NaN NaN NaN NaN NaN NaN NaN 20.539 1 20.539 20.039 21.039 0 0 0 0 0.44388 1 10340 10340 47.594 14.809 1 44866 6109 29757 30496 52813 52813 -0.027508329272791343 PEEDKKTY 8 Unmodified _PEEDKKTY_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2441101074219 2 505.245472 1008.47639 NaN NaN NaN NaN NaN NaN NaN 20.558 1 20.558 20.058 21.058 0 0 0 0 0.25779 1 10351 10351 71.708 24.787 1 44867 6109 29757 30496 52814 52814 -0.027508329272791343 PEEDSTLPSY 10 Unmodified _PEEDSTLPSY_ 0 0 0 REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L REV__nc|ENSG00000104885|Q8TEK3-1|DOT1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2838745117188 2 569.250951 1136.48735 0.60203 0.00034271 2.8366 0.0016147 3.4387 0.0019575 569.7530740842507 53.491 0.18723 53.039 52.9 53.087 -0.45173 15 8 2 0 0 0 0.23634 1 28908 28908 6.7232 0 1 1161900 + 44868 18383 29758 30497 52815 52815 -0.07543475343641148 PEEEIQLLKQI 11 Unmodified _PEEEIQLLKQI_ 0 0 0 nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;PPHLN1-TIMELESS|3|fusion;PPHLN1-TIMELESS|4|fusion;PPHLN1-TIMELESS|5|fusion;ENST00000557589.1_1_12:56817199-56818568:-|nuORF;PPHLN1-TIMELESS|2|fusion;PPHLN1-TIMELESS|1|fusion;PPHLN1-TIMELESS|6|fusion nc|ENSG00000111602|Q9UNS1-2|TIMELESS;PPHLN1-TIMELESS|2|fusion nc|ENSG00000111602|Q9UNS1-2|TIMELESS MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.3779907226562 2 670.377017 1338.73948 0.80582 0.0005402 0.39126 0.00026229 1.1971 0.0008025 670.3769988211699 88.839 0.46106 82.663 82.459 82.92 -6.1757 37 25 2 0 0 0 0.49694 1 58655 58655 16.566 1.3174 1 9833800 44869 2797;16691 29759 30498 52816 52816 0.0836616273772961 PEEFRFNY 8 Unmodified _PEEFRFNY_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.839111328125 3 367.83818 1100.49271 1.1588 0.00042625 -0.2639 -9.7073E-05 0.89488 0.00032917 368.1716030400764 17.84 0.18861 15.254 15.161 15.349 -2.5866 27 16 2 0 0 0 0.77907 1 9413 9413 7.2892 1.8865 1 1869700 + 44870 19661 29760 30499 52817 52817 -0.053517069705321774 PEEGGATHVY 10 Unmodified _PEEGGATHVY_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7457885742188 2 530.240721 1058.46689 -0.23119 -0.00012259 3.259 0.001728 3.0278 0.0016055 530.7448946364877 26.423 0.12452 26.423 26.343 26.468 0 8 5 2 0 0 0 0.27276 1 13590 13590 29.082 12.139 1 491260 44871 7491 29761 30500 52818 52818 -0.06000601212804213 PEEHARFY 8 Unmodified _PEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2471923828125 2 524.745973 1047.47739 -0.34866 -0.00018296 1.0812 0.00056734 0.73251 0.00038438 525.2476536764732 33.07 0.50659 32.911 32.664 33.171 -0.15918 37 20 3 0 0 0 0.54555 1 17217 17217 30.637 5.2372 1 1481800 44872 961;7018 29762 30501 52819 52819 -0.04444573767705151 PEEHARFY 8 Unmodified _PEEHARFY_ 0 0 0 nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;ENST00000505322.5_1_1:2100378-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000392722.3_1_X:100793145-100793415:-|nuORF;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI nc|ENSG00000067606|Q05513-2|PRKCZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.745973 1047.47739 -0.44338 -0.00023266 -0.15669 -8.2224E-05 -0.60007 -0.00031488 524.746388348135 32.971 0.33514 32.971 32.733 33.068 0 0.030002 -0.0010059 NaN 30.637 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2925300 44873 961;7018 29762 30501 -0.04444573767705151 PEEHQVCFL 9 Unmodified _PEEHQVCFL_ 0 0 0 ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5 ENSG00000182685|ENST00000328540|BRICD5 ENSG00000182685|ENST00000328540|BRICD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2559204101562 2 551.255317 1100.49608 0.40563 0.0002236 0.54615 0.00030107 0.95178 0.00052467 551.2558250671755 92.037 0.39375 92.037 91.798 92.192 0 88 24 5 0 0 0 0.54444 1 50900 50900 4.756 0 1 3397000 44874 9077 29763 30502 52820 52820 -0.05014780188162149 PEEHQVCFL 9 Unmodified _PEEHQVCFL_ 0 0 0 ENSG00000182685|ENST00000328540|BRICD5;nc|ENSG00000182685|Q6PL45|BRICD5 ENSG00000182685|ENST00000328540|BRICD5 ENSG00000182685|ENST00000328540|BRICD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2562866210938 2 551.255317 1100.49608 0.50309 0.00027733 -0.45988 -0.00025351 0.043207 2.3818E-05 551.2556394365688 92.517 0.4422 92.036 91.791 92.233 -0.48092 112 20 7 0 0 0 0.54444 1 50492 50492 4.756 0 1 14062000 44875 9077 29763 30502 52821 52821 -0.05014780188162149 PEEHTILEF 9 Unmodified _PEEHTILEF_ 0 0 0 ENST00000497604.1_1_2:106710484-106717684:-|nuORF;nc|ENSG00000115652|Q8NBZ7-3|UXS1;nc|ENSG00000115652|Q8NBZ7|UXS1;ENSG00000115652|ENST00000283148|UXS1 ENST00000497604.1_1_2:106710484-106717684:-|nuORF ENST00000497604.1_1_2:106710484-106717684:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7783813476562 2 557.774396 1113.53424 0.67089 0.00037421 2.3711 0.0013225 3.0419 0.0016967 557.7753872205287 87.769 0.37879 87.265 87.081 87.46 -0.50423 27 18 2 0 0 0 0.5029 1 47974 47974 7.2892 3.3448 1 516290 44876 3149 29764 30503 52822 52822 -0.017985710018365353 PEEIEKYV 8 Unmodified _PEEIEKYV_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7 ENSG00000101182|ENST00000370873|PSMA7 ENSG00000101182|ENST00000370873|PSMA7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2774963378906 2 503.758215 1005.50188 0.73303 0.00036927 0.60239 0.00030346 1.3354 0.00067273 503.75874477442255 47.032 0.58628 41.951 41.71 42.296 -5.0805 121 57 3 0 0 0 8.7369 1 29384 29384 32.305 0 1 138690000 44877 1924 29765 30504 52823 52823 -0.000653584048563971 PEEKIREY 8 Unmodified _PEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7774047851562 2 532.274564 1062.53457 -0.11282 -6.0051E-05 0.11755 6.2569E-05 0.0047299 2.5176E-06 532.2746839958733 21.878 0.14725 21.878 21.829 21.976 0 31 19 2 0 0 0 0.52066 1 11091 11091 32.786 7.3864 1 1114000 44878 5082 29766 30505 52824 52824 0.00580848718004745 PEEKIREY 8 Unmodified _PEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2742919921875 2 532.274564 1062.53457 0.23656 0.00012591 0.10792 5.7444E-05 0.34448 0.00018336 532.274463305521 24.58 0.27615 21.697 21.559 21.835 -2.8831 18 14 2 0 0 0 0.22167 1 13379 13379 66.457 7.7779 1 2632400 44879 5082 29766 30505 52825 52825 0.00580848718004745 PEELALSFI 9 Unmodified _PEELALSFI_ 0 0 0 REV__ENSG00000167646|ENST00000524407|DNAAF3 REV__ENSG00000167646|ENST00000524407|DNAAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7768249511719 2 509.776408 1017.53826 0.67349 0.00034333 2.0111 0.0010252 2.6846 0.0013686 509.7778111409022 80.4 0.5011 79.91 79.533 80.034 -0.48932 27 19 2 0 0 0 0.41742 1 43984 43984 11.64 3.7301 1 353890 + 44880 22234 29767 30506 52826 52826 0.030195184918625273 PEELGARILI 10 Unmodified _PEELGARILI_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2701416015625 2 555.829506 1109.64446 0.153 8.5044E-05 -0.020214 -1.1235E-05 0.13279 7.3808E-05 555.8297233296512 69.915 0.13386 69.436 69.314 69.448 -0.47903 9 5 2 0 0 0 0.21783 1 38192 38192 24.021 10.115 1 789500 44881 1734 29768 30507 52827 52827 0.09402274057174509 PEELLEQLY 9 Unmodified _PEELLEQLY_ 0 0 0 ENSG00000172458|ENST00000682841|IL17D ENSG00000172458|ENST00000682841|IL17D ENSG00000172458|ENST00000682841|IL17D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2877197265625 2 567.289879 1132.56521 0.31991 0.00018148 -0.55063 -0.00031237 -0.23073 -0.00013089 567.2899268101044 96.358 0.23598 96.358 96.232 96.468 0 29 19 2 0 0 0 0.58865 1 53215 53215 2.0598 0 1 245760 44882 8220 29769 30508 52828 52828 0.004225823123761074 PEELMFQYFK 10 Unmodified _PEELMFQYFK_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENST00000549711.5_1_12:112487373-112518932:-|nuORF ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.318359375 2 666.320657 1330.62676 NaN NaN NaN NaN NaN NaN NaN 75.304 1 75.304 74.804 75.804 0 0 0 0 0.99248 1 41891 41891 1.4819 0.28856 1 44883 2777 29770 30509 52829 52829 -0.025328092599920637 PEELMPDSGAV 11 Unmodified _PEELMPDSGAV_ 0 0 0 nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;ENSG00000156313|ENST00000645032|RPGR nc|ENSG00000156313|Q92834-5|RPGR nc|ENSG00000156313|Q92834-5|RPGR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7340698242188 2 572.763171 1143.51179 1.1048 0.00063278 0.095052 5.4442E-05 1.1998 0.00068722 573.2640467312929 54.494 0.2458 54.494 54.352 54.597 0 14 10 2 0 0 0 0.30217 1 30201 30201 5.2969 3.4526 1 704170 44884 6448 29771 30510 52830 52830 -0.054225384617893724 PEELNEPDWL 10 Unmodified _PEELNEPDWL_ 0 0 0 REV__ENSG00000172725|ENST00000341356|CORO1B REV__ENSG00000172725|ENST00000341356|CORO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5286865234375 3 414.527671 1240.56118 0.34846 0.00014444 0.25587 0.00010606 0.60432 0.00025051 414.5279218387244 63.61 0.47739 63.124 62.841 63.318 -0.48617 50 21 3 0 0 0 0.69064 1 34754 34754 1.9064 0 1 3538200 + 44885 22668 29772 30511 52831 52831 -0.049475071813049 PEELPSFFQ 9 Unmodified _PEELPSFFQ_ 0 0 0 REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2 REV__nc|ENSG00000056586|Q9HBD1-3|RC3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.263427734375 2 547.263665 1092.51278 0.37925 0.00020755 -0.20182 -0.00011045 0.17743 9.7101E-05 547.2639739760026 69.18 0.56651 69.18 68.811 69.377 0 40 24 2 0 0 0 0.55775 1 38563 38563 3.9444 0 1 927290 + 44886 29493 29773 30512 52832 52832 -0.029779560305769337 PEEMSQEPEI 10 Unmodified _PEEMSQEPEI_ 0 0 0 nc|ENSG00000187537|Q6S5H5-2|POTEG;ENSG00000222036|ENST00000547889|POTEM;ENSG00000187537|ENST00000547848|POTEG;ENSG00000198062|ENST00000343518|POTEH nc|ENSG00000187537|Q6S5H5-2|POTEG nc|ENSG00000187537|Q6S5H5-2|POTEG MSMS AL20221201_MKP_PDAC_01 4 396.8428955078125 3 396.84115 1187.50162 NaN NaN NaN NaN NaN NaN NaN 18.604 1 15.983 15.483 16.483 -2.6215 0 0 0 0.97592 1 9810 9810 1.5923 0.37745 1 44887 9563 29774 30513 52833 52833 -0.08463146187000348 PEEMSWPP 8 Unmodified _PEEMSWPP_ 0 0 0 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7093811035156 2 486.710211 971.405868 NaN NaN NaN NaN NaN NaN NaN 81.767 1 81.767 81.267 82.267 0 0 0 0 0.97444 1 45376 45376 2.5775 0 1 44888 4025 29775 30514 52834 52834 -0.08097829516600541 PEEPKDEE 8 Unmodified _PEEPKDEE_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7116088867188 2 486.711462 971.408371 -0.1693 -8.2398E-05 1.7608 0.00085701 1.5915 0.00077461 486.71206985743885 22.613 0.20669 22.613 22.507 22.714 0 16 9 2 0 0 0 0.44629 1 11490 11490 39.957 0 1 920840 + 44889 22418 29776 30515 52835 52835 -0.07847702577942073 PEEPSFCL 8 Unmodified _PEEPSFCL_ 0 0 0 ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF;ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1 ENST00000506360.5_1_4:8220037-8234255:+|nuORF ENST00000506360.5_1_4:8220037-8234255:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2038269042969 2 461.204761 920.394969 NaN NaN NaN NaN NaN NaN NaN 91.033 1 90.538 90.038 91.038 -0.49457 0 0 0 0.97348 1 49764 49764 5.7604 1.0044 1 44890 3828 29777 30516 52836 52836 -0.06841231890882682 PEEQAGEATY 10 Unmodified _PEEQAGEATY_ 0 0 0 REV__nc|ENSG00000148516|P37275-3|ZEB1 REV__nc|ENSG00000148516|P37275-3|ZEB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7357177734375 2 547.735468 1093.45638 0.35467 0.00019427 1.2023 0.00065857 1.557 0.00085284 547.7361760725173 56.807 0.57029 56.807 56.564 57.135 0 42 24 2 0 0 0 0.54684 1 31605 31605 13.906 3.0821 1 5607100 + 44891 20958 29778 30517 52837 52837 -0.08660628657889902 PEEQECCCCQ 10 Unmodified _PEEQECCCCQ_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.12109375 3 391.122277 1170.345 -0.55562 -0.00021731 -1.3616 -0.00053254 -1.9172 -0.00074986 391.12167664843037 28.867 0.44107 28.867 28.641 29.082 0 38 21 2 0 0 0 0.71123 2 14879 14879;14983 0.69767 0.69767 1 4560300 + 44892 20011 29779 30518 52838;52839 52838 -0.23335793945011574 PEEQECCCCQ 10 Unmodified _PEEQECCCCQ_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.122277 1170.345 -0.55562 -0.00021731 -1.3616 -0.00053254 -1.9172 -0.00074986 391.12167664843037 28.867 0.44107 28.867 28.641 29.082 0 0 0 NaN 0.69767 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 4560300 + 44893 20011 29779 30518 -0.23335793945011574 PEERKVEL 8 Unmodified _PEERKVEL_ 0 0 0 ENST00000391839.6_1_1:244998983-245005526:+|nuORF ENST00000391839.6_1_1:244998983-245005526:+|nuORF ENST00000391839.6_1_1:244998983-245005526:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.0292053222656 2 500.277106 998.53966 NaN NaN NaN NaN NaN NaN NaN 15.049 1 12.522 12.022 13.022 -2.5273 0 0 0 0.95254 1 7690 7690 10.074 1.3285 1 44894 12656 29780 30519 52840 52840 0.04033152580609567 PEERRHQY 8 Unmodified _PEERRHQY_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MSMS AL20221201_MKP_PDAC_01 4 557.7731323242188 2 557.773054 1113.53155 NaN NaN NaN NaN NaN NaN NaN 20.383 1 17.69 17.19 18.19 -2.693 0 0 0 0.97348 1 10859 10859 5.7604 0 1 44895 3414 29781 30520 52841 52841 -0.020669816161444032 PEERRQMCL 9 Unmodified _PEERRQMCL_ 0 0 0 REV__ENST00000608937.5_1_9:137000533-137000803:+|nuORF REV__ENST00000608937.5_1_9:137000533-137000803:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8543701171875 3 387.854959 1160.54305 0.88678 0.00034394 -1.6848 -0.00065347 -0.79804 -0.00030952 387.85426269421424 44.108 0.27016 39.343 39.188 39.458 -4.7648 18 17 2 0 0 0 0.41742 1 26902 26902 7.609 0 1 12521000 + 44896 29327 29782 30521 52842 52842 -0.030802439086528466 PEERVKLFSF 10 Unmodified _PEERVKLFSF_ 0 0 0 nc|ENSG00000131951|Q6ZRR7|LRRC9;nc|ENSG00000131951|Q6ZRR7-2|LRRC9;ENSG00000131951|ENST00000570145|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 nc|ENSG00000131951|Q6ZRR7|LRRC9 MSMS AL20221201_MKP_PDAC_01 4 417.8973083496094 3 417.895917 1250.66592 NaN NaN NaN NaN NaN NaN NaN 20.899 1 18.206 17.706 18.706 -2.693 0 0 0 0.96981 1 11155 11155 1.9064 0.1641 1 44897 16191 29783 30522 52843 52843 0.05061659085890824 PEESLDPPG 9 Unmodified _PEESLDPPG_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7171020507812 2 470.716547 939.418542 -0.23182 -0.00010912 1.4874 0.00070013 1.2555 0.00059101 470.7170033959513 26.431 0.14484 26.431 26.323 26.468 0 11 6 2 0 0 0 0.16226 1 13567 13567 26.884 0 1 1031600 44898 3952 29784 30523 52844 52844 -0.05359094852713042 PEESLTVCF 9 Unmodified _PEESLTVCF_ 0 0 0 ENST00000549030.1_1_14:105856139-105857603:+|nuORF ENST00000549030.1_1_14:105856139-105857603:+|nuORF ENST00000549030.1_1_14:105856139-105857603:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.1951293945312 2 512.736425 1023.4583 0.77671 0.00039825 -0.65058 -0.00033358 0.12612 6.4668E-05 513.2362135276194 46.423 0.42075 46.423 46.164 46.585 0 25 19 2 0 0 0 0.19613 1 25245 25245 7.9102 2.6795 1 1575600 44899 15144 29785 30524 52845 52845 -0.05249291173652182 PEESNLNLPV 10 Unmodified _PEESNLNLPV_ 0 0 0 nc|ENSG00000115421|Q9BWT3-2|PAPOLG;ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61002191-61018944:+|nuORF;ENST00000496283.5_1_2:61002191-61021341:+|nuORF nc|ENSG00000115421|Q9BWT3-2|PAPOLG nc|ENSG00000115421|Q9BWT3-2|PAPOLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2694091796875 2 556.285128 1110.5557 0.30977 0.00017232 2.7778 0.0015453 3.0876 0.0017176 556.2864932392312 70.148 0.19908 70.148 70.109 70.308 0 15 9 2 0 0 0 0.62068 1 39068 39068 10.074 0.6908 1 1223400 44900 3123 29786 30525 52846 52846 0.004848140268450152 PEETLPSVP 9 Unmodified _PEETLPSVP_ 0 0 0 REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1 REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.4907836914062 1 968.493504 967.486227 0.56433 0.00054655 -1.3316 -0.0012897 -0.7673 -0.00074313 968.4927317228263 49.713 0.34908 49.713 49.51 49.859 0 31 15 3 0 0 0 0.39863 1 27319 27319 12.532 0.89125 1 5977800 + 44901 23410 29787 30526 52847 52847 0.0011835507809792034 PEEVLEMQI 9 Unmodified _PEEVLEMQI_ 0 0 0 ENST00000523170.5_1_8:66556979-66582184:+|nuORF ENST00000523170.5_1_8:66556979-66582184:+|nuORF ENST00000523170.5_1_8:66556979-66582184:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2698364257812 2 544.270632 1086.52671 0.46218 0.00025155 -2.3449 -0.0012763 -1.8827 -0.0010247 544.2692759408847 74.43 0.40264 74.43 74.137 74.54 0 29 18 2 0 0 0 0.49272 1 41428 41428 7.9102 2.1497 1 753230 44902 14765 29788 30527 52848 52848 -0.013090465937693807 PEEVQERSTNQ 11 Unmodified _PEEVQERSTNQ_ 0 0 0 ENST00000493610.2_1_10:105156463-105159443:+|nuORF;ENST00000369797.7_1_10:105156463-105160223:+|nuORF ENST00000493610.2_1_10:105156463-105159443:+|nuORF ENST00000493610.2_1_10:105156463-105159443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.8077392578125 2 658.807488 1315.60042 NaN NaN NaN NaN NaN NaN NaN 68.862 1 68.381 67.881 68.881 -0.48071 0 0 0 0.93969 1 37640 37640 2.7352 1.2533 1 44903 12316 29789 30528 52849 52849 -0.04475406897745415 PEEVVALPF 9 Unmodified _PEEVVALPF_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7698669433594 2 500.771126 999.527698 0.37848 0.00018953 0.71179 0.00035644 1.0903 0.00054598 500.7710567933719 76.717 0.38387 76.717 76.468 76.852 0 23 15 2 0 0 0 0.55144 1 42595 42595 4.3292 2.2695 1 443420 + 44904 21169 29790 30529 52850 52850 0.02791535837434367 PEEVVKEVSL 10 Unmodified _PEEVVKEVSL_ 0 0 0 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8118286132812 2 564.810979 1127.6074 NaN NaN NaN NaN NaN NaN NaN 78.763 1 78.277 77.777 78.777 -0.48596 0 0 0 0.66657 1 43139 43139 18.146 1.0335 1 44905 10250 29791 30530 52851 52851 0.04870557720778379 PEEWLKFPK 9 Unmodified _PEEWLKFPK_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10;nc|ENSG00000135905|Q96BY6-2|DOCK10;ENST00000492369.5_1_2:225727286-225907091:-|nuORF nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8816833496094 3 391.881608 1172.623 1.0731 0.00042052 0.11572 4.5348E-05 1.1888 0.00046587 391.8815734656055 84.126 0.88575 77.95 77.528 78.414 -6.1757 119 48 4 0 0 0 0.43463 1 55150 55150 7.1017 0.90987 1 36570000 44906 4753 29792 30531 52852 52852 0.043588890284581794 PEEYVYELFEK 11 Unmodified _PEEYVYELFEK_ 0 0 0 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 723.3450317382812 2 723.345383 1444.67621 NaN NaN NaN NaN NaN NaN NaN 26.455 1 26.482 25.982 26.982 0.026951 0 0 0 0.94165 1 13722 13722 1.3295 0 1 + 44907 23040 29793 30532 52853 52853 -0.02833822770230654 PEFAKLMLL 9 Unmodified _PEFAKLMLL_ 0 0 0 REV__ENSG00000166224|ENST00000373202|SGPL1 REV__ENSG00000166224|ENST00000373202|SGPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3090209960938 2 531.306821 1060.59909 0.87077 0.00046265 1.5398 0.00081813 2.4106 0.0012808 531.307709441136 102.17 0.13397 95.994 95.918 96.052 -6.1757 13 5 4 0 0 0 0.042911 1 68586 68586 48.346 2.3249 1 20792000 + 44908 22095 29794 30533 52854 52854 0.07121332270435232 PEFGETDFTYW 11 Unmodified _PEFGETDFTYW_ 0 0 0 ENST00000376351.3_1_10:25839939-25861787:+|nuORF ENST00000376351.3_1_10:25839939-25861787:+|nuORF ENST00000376351.3_1_10:25839939-25861787:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.5345153808594 3 464.531192 1390.57175 -0.041092 -1.9089E-05 0.93957 0.00043646 0.89848 0.00041737 464.5316425166035 42.495 0.29662 42.188 42.064 42.36 -0.30682 67 14 6 0 0 0 0.71036 1 22570 22570 1.3296 0.11481 1 170410000 44909 12491 29795 30534 52855 52855 -0.10791524526894136 PEFHQLVHI 9 Unmodified _PEFHQLVHI_ 0 0 0 REV__ENSG00000114698|ENST00000354952|PLSCR4 REV__ENSG00000114698|ENST00000354952|PLSCR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.8692321777344 3 373.869703 1118.58728 -0.28901 -0.00010805 0.46093 0.00017233 0.17192 6.4275E-05 373.8699173456295 41.776 0.23265 41.776 41.689 41.921 0 29 11 3 0 0 0 0.39863 1 22565 22565 8.1555 1.5252 1 15990000 + 44910 18927 29796 30535 52856 52856 0.032728515714552486 PEFLESVSW 9 Unmodified _PEFLESVSW_ 0 0 0 ENST00000381061.8_1_22:46239551-46239644:+|nuORF ENST00000381061.8_1_22:46239551-46239644:+|nuORF ENST00000381061.8_1_22:46239551-46239644:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7072143554688 2 547.263665 1092.51278 0.53236 0.00029134 -0.046387 -2.5386E-05 0.48597 0.00026595 547.2632456923228 77.457 0.39663 71.281 71.17 71.566 -6.1757 25 22 2 0 0 0 0.1325 1 50601 50601 25.399 7.2643 1 9900300 44911 12611 29797 30536 52857 52857 -0.029779560305541963 PEFMSDDHI 9 Unmodified _PEFMSDDHI_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7308349609375 2 545.729132 1089.44371 NaN NaN NaN NaN NaN NaN NaN 55.779 1 55.779 55.279 56.279 0 0 0 0 0.6306 1 30999 30999 11.64 1.4569 1 + 44912 20360 29798 30537 52858 52858 -0.09743363321786092 PEFQQPLY 8 Unmodified _PEFQQPLY_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7546691894531 2 511.2531 1020.49165 -0.25832 -0.00013207 -2.5809 -0.0013195 -2.8392 -0.0014516 511.25112187407024 25.836 0.29015 25.836 25.695 25.986 0 24 13 3 0 0 0 0.63229 1 13271 13271 23.148 0.41214 1 1991600 44913 7326 29799 30538 52859 52859 -0.017779213394419457 PEFRRLGL 8 Unmodified _PEFRRLGL_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20;nc|ENSG00000173418|P61599-2|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2902526855469 2 494.290351 986.566149 NaN NaN NaN NaN NaN NaN NaN 44.088 1 44.066 43.566 44.566 -0.022064 0 0 0 0.25425 1 23647 23647 74.929 34.972 1 44914 8322 29800 30539 52860 52860 0.07232886262602278 PEFSFEKR 8 Unmodified _PEFSFEKR_ 0 0 0 ENST00000475515.1_1_2:176796882-176802216:-|nuORF;ENST00000479012.1_1_2:176794697-176802294:-|nuORF;nc|ENSG00000144320|Q9C0E8-3|LNPK;nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK ENST00000475515.1_1_2:176796882-176802216:-|nuORF ENST00000475515.1_1_2:176796882-176802216:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2570190429688 2 520.263999 1038.51345 0.41732 0.00021712 -0.18307 -9.5245E-05 0.23425 0.00012187 520.2632046704821 57.296 0.10704 56.806 56.773 56.88 -0.48974 6 4 2 0 0 0 0.79783 1 31143 31143 7.9102 0 1 1601800 44915 5599 29801 30540 52861 52861 -0.0042711659086762666 PEFSMDIALW 10 Unmodified _PEFSMDIALW_ 0 0 0 REV__nc|ENSG00000159110|P48551-3|IFNAR2 REV__nc|ENSG00000159110|P48551-3|IFNAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5265502929688 3 403.526725 1207.55835 NaN NaN NaN NaN NaN NaN NaN 84.386 1 84.449 83.949 84.949 0.063171 0 0 0 0.7417 1 46692 46692 8.9762 0 1 + 44916 21459 29802 30541 52862 52862 -0.037130538398514545 PEFSMDIALW 10 Unmodified _PEFSMDIALW_ 0 0 0 REV__nc|ENSG00000159110|P48551-3|IFNAR2 REV__nc|ENSG00000159110|P48551-3|IFNAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.526611328125 3 403.526725 1207.55835 NaN NaN NaN NaN NaN NaN NaN 84.621 1 84.684 84.184 85.184 0.063171 0 0 0 0.7417 1 46830 46830 8.9762 0 1 + 44917 21459 29802 30541 52863 52863 -0.037130538398514545 PEFTKVTSF 9 Unmodified _PEFTKVTSF_ 0 0 0 REV__ENST00000451612.5_1_12:6982849-6993062:+|nuORF REV__ENST00000451612.5_1_12:6982849-6993062:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7763671875 2 528.274032 1054.53351 0.37951 0.00020048 1.5223 0.00080417 1.9018 0.0010047 528.274837643618 88.65 0.63029 88.145 87.825 88.455 -0.50423 43 27 2 0 0 0 0.54444 1 48552 48552 4.756 0.81161 1 635160 + 44918 26719 29803 30542 52864 52864 0.008426343491009902 PEGAFMKVL 9 Unmodified _PEGAFMKVL_ 0 0 0 ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3 MSMS AL20221201_MKP_PDAC_01 4 496.2713928222656 2 496.267696 990.520839 NaN NaN NaN NaN NaN NaN NaN 79.379 1 73.203 72.703 73.703 -6.1757 0 0 0 0.29524 1 52010 52010 25.399 8.457 1 44919 8613;15494 29804 30543 52865 52865 0.02519899685216842 PEGKDWKEDE 10 Unmodified _PEGKDWKEDE_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5188293457031 3 411.519175 1231.5357 -0.80456 -0.00033109 0.65846 0.00027097 -0.14609 -6.012E-05 411.51955852895804 27.961 0.59243 27.961 27.659 28.251 0 76 32 3 0 0 0 0.69377 1 14339 14339 3.5871 3.5871 1 5519500 44920 6920 29805 30544 52866 52866 -0.07080981703757061 PEGNQKSVI 9 Unmodified _PEGNQKSVI_ 0 0 0 ENSG00000197584|ENST00000452583|KCNMB2;chr3:178558984-178807343|108|11.11|0.68|4.03|+|ENST00000432997|KCNMB2,KCNMB2 ENSG00000197584|ENST00000452583|KCNMB2 ENSG00000197584|ENST00000452583|KCNMB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2634582519531 2 486.261456 970.50836 NaN NaN NaN NaN NaN NaN NaN 86.248 1 85.744 85.244 86.244 -0.50318 0 0 0 0.84892 1 47193 47193 1.6526 0 1 44921 111 29806 30545 52867 52867 0.021925795465335796 PEGPGWAE 8 Unmodified _PEGPGWAE_ 0 0 0 REV__ENST00000397536.6_2_15:40627596-40627656:-|nuORF REV__ENST00000397536.6_2_15:40627596-40627656:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.3741455078125 1 842.367909 841.360633 -0.049466 -4.1669E-05 0.17466 0.00014712 0.12519 0.00010546 842.3679425382655 52.542 0.30013 52.542 52.402 52.702 0 30 13 3 0 0 0 0.80232 1 29109 29109 5.2307 0 1 11190000 + 44922 26538 29807 30546 52868 52868 -0.06639311987476049 PEGRVSRL 8 Unmodified _PEGRVSRL_ 0 0 0 ENSG00000253304|ENST00000521452|TMEM200B ENSG00000253304|ENST00000521452|TMEM200B ENSG00000253304|ENST00000521452|TMEM200B MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2635803222656 2 457.264333 912.514114 1.2931 0.0005913 -0.53325 -0.00024384 0.75987 0.00034746 457.26371676245117 94.261 0.5274 88.085 87.788 88.315 -6.1757 47 30 2 0 0 0 0.80143 1 62441 62441 5.7604 0 1 11411000 44923 10762 29808 30547 52869 52869 0.05435722848869773 PEGSDIRRVF 10 Unmodified _PEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5432739257812 3 392.543767 1174.60947 -0.31726 -0.00012454 -0.32098 -0.000126 -0.63824 -0.00025054 392.5438118805053 36.312 0.22895 36.337 36.208 36.437 0.024971 21 9 3 0 0 0 0.0575 1 19243 19243 40.725 26.32 1 3442900 44924 4951 29809 30548 52870 52870 0.02915031249222011 PEGSDIRRVF 10 Unmodified _PEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3109130859375 2 588.312012 1174.60947 0.36278 0.00021343 -1.0465 -0.00061565 -0.68369 -0.00040222 588.3113783034005 55.093 0.21919 55.024 54.919 55.138 -0.068737 15 10 2 0 0 0 0.025861 1 29947 29947 70.332 39.695 1 1418800 44925 4951 29809 30548 52871 52871 0.02915031249222011 PEGYVTHER 9 Unmodified _PEGYVTHER_ 0 0 0 REV__ENSG00000147381|ENST00000276344|MAGEA4 REV__ENSG00000147381|ENST00000276344|MAGEA4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.3108520507812 2 544.261988 1086.50942 1.0364 0.00056406 0.014166 7.7101E-06 1.0505 0.00057177 544.2618849986059 55.241 0.38631 49.32 49.157 49.543 -5.9211 35 23 2 0 0 0 0.19205 1 35063 35063 10.074 3.7198 1 18074000 + 44926 20885 29810 30549 52872 52872 -0.030372060845593296 PEHKKGLKR 9 Unmodified _PEHKKGLKR_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8929443359375 3 364.89273 1091.65636 0.91946 0.00033551 0.052238 1.9061E-05 0.9717 0.00035457 364.89268336296794 16.897 0.36493 14.34 14.133 14.498 -2.557 134 63 3 0 0 0 0.43515 1 8777 8777 10.8 0.64894 1 12317000 44927 3227 29811 30550 52873 52873 0.11419935591038666 PEHLPSNFL 9 Unmodified _PEHLPSNFL_ 0 0 0 nc|ENSG00000168826|Q6ZSB9-4|ZBTB49;nc|ENSG00000168826|Q6ZSB9-3|ZBTB49;nc|ENSG00000168826|Q6ZSB9-5|ZBTB49;nc|ENSG00000168826|Q6ZSB9-2|ZBTB49;ENSG00000168826|ENST00000337872|ZBTB49 nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 nc|ENSG00000168826|Q6ZSB9-4|ZBTB49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.272705078125 2 527.271824 1052.5291 0.67725 0.0003571 0.06943 3.6608E-05 0.74668 0.0003937 527.7732600999072 60.918 0.23249 60.918 60.767 60.999 0 15 9 2 0 0 0 0.21643 1 33967 33967 21.537 1.0834 1 954800 44928 7804 29812 30551 52874 52874 0.0049316992619878874 PEHRYDWW 8 Unmodified _PEHRYDWW_ 0 0 0 REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|23|3|anti-sense REV__AluSp_dup1142|chr1:32231212-32231509:+|1.0081318461570428|0.2089834518128584|2.27|179.0|23|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8214721679688 2 594.764697 1187.51484 -0.62905 -0.00037414 -0.48096 -0.00028606 -1.11 -0.00066019 594.765388810554 34.409 0.40648 34.409 34.19 34.597 0 61 20 5 0 0 0 8.7369 1 17996 17996 19.439 8.6151 1 4883400 + 44929 16715 29813 30552 52875 52875 -0.07141482502106555 PEHTSVPD 8 Unmodified _PEHTSVPD_ 0 0 0 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2044982910156 2 441.203607 880.392661 -0.12071 -5.3256E-05 1.1788 0.00052009 1.0581 0.00046683 441.2043270712485 22.727 1.1651 22.727 22.324 23.489 0 123 59 3 0 0 0 0.67481 1 11669 11669 19.439 4.8573 1 3567600 + 44930 29857 29814 30553 52876 52876 -0.05231944304330227 PEHWAEPPFP 10 Unmodified _PEHWAEPPFP_ 0 0 0 ENST00000532896.5_1_19:18304624-18307257:+|nuORF ENST00000532896.5_1_19:18304624-18307257:+|nuORF ENST00000532896.5_1_19:18304624-18307257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.8561096191406 3 402.857463 1205.55056 -0.40374 -0.00016265 -1.5599 -0.00062842 -1.9636 -0.00079107 402.8565475934396 22.368 0.2417 22.368 22.245 22.486 0 24 11 3 0 0 0 0.67413 1 11368 11368 5.7834 2.1964 1 1221200 44931 14931 29815 30554 52877 52877 -0.043994450451236844 PEHWTCDGD 9 Unmodified _PEHWTCDGD_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7606201171875 2 530.195456 1058.37636 0.35374 0.00018755 1.0513 0.0005574 1.4051 0.00074495 530.1960825469247 64.051 0.36418 64.051 63.85 64.214 0 20 14 2 0 0 0 0.21819 1 35657 35657 2.0598 2.0598 1 923280 44932 3705 29816 30555 52878 52878 -0.15049393532740396 PEIDHFPY 8 Unmodified _PEIDHFPY_ 0 0 0 REV__ENSG00000071575|ENST00000155926|TRIB2 REV__ENSG00000071575|ENST00000155926|TRIB2 MSMS AL20221201_MKP_PDAC_01 4 509.2398071289062 2 509.23745 1016.46035 NaN NaN NaN NaN NaN NaN NaN 74.512 1 68.336 67.836 68.836 -6.1757 0 0 0 0.93587 1 48712 48712 13.508 3.3245 1 + 44933 17498 29817 30556 52879 52879 -0.04722494373527297 PEIFLDVKL 9 Unmodified _PEIFLDVKL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 358.5480651855469 3 358.546226 1072.61685 NaN NaN NaN NaN NaN NaN NaN 14.76 1 12.233 11.733 12.733 -2.5273 0 0 0 0.49196 1 7518 7518 16.149 1.3108 1 44934 6400 29818 30557 52880 52880 0.08344370796953626 PEIFTEIGTI 10 Unmodified _PEIFTEIGTI_ 0 0 0 nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC nc|ENSG00000290691|A6NGW2|STRCP1 nc|ENSG00000290691|A6NGW2|STRCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8701171875 3 373.869257 1118.58594 1.279 0.00047817 0.96891 0.00036225 2.2479 0.00084042 373.869734533884 47.025 0.39264 41.944 41.818 42.211 -5.0805 56 34 2 0 0 0 0.62068 1 29260 29260 8.9762 2.3459 1 28654000 44935 10704 29819 30558 52881 52881 0.031391726920674046 PEIKVLQWL 9 Unmodified _PEIKVLQWL_ 0 0 0 ENST00000487676.1_1_6:32627706-32627964:-|nuORF ENST00000487676.1_1_6:32627706-32627964:-|nuORF ENST00000487676.1_1_6:32627706-32627964:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2073364257812 2 563.336967 1124.65938 0.41778 0.00023535 0.051406 2.8959E-05 0.46919 0.00026431 563.3369550601805 52.802 0.20089 52.802 52.657 52.858 0 12 8 2 0 0 0 0.21367 1 29163 29163 2.0598 0 1 1509700 44936 14207 29820 30559 52882 52882 0.10203765925189145 PEINITPF 8 Unmodified _PEINITPF_ 0 0 0 REV__ENSG00000176153|ENST00000389614|GPX2 REV__ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7507934570312 2 465.750193 929.485833 0.67365 0.00031375 -0.31115 -0.00014492 0.36249 0.00016883 465.75112104617443 101.84 0.37488 95.668 95.582 95.957 -6.1757 56 21 3 0 0 0 0.79783 1 68333 68333 7.9102 0 1 20428000 + 44937 22913 29821 30560 52883 52883 0.018269801488941084 PEIQKVKSRER 11 Unmodified _PEIQKVKSRER_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MSMS AL20221201_MKP_PDAC_01 4 457.2702331542969 3 457.268525 1368.78375 NaN NaN NaN NaN NaN NaN NaN 12.011 1 9.5288 9.0288 10.029 -2.482 0 0 0 0.92174 1 6054 6054 6.2344 2.3884 1 + 44938 7667 29822 30561 52884 52884 0.1141061167454609 PEIRYILLIL 10 Unmodified _PEIRYILLIL_ 0 0 0 ENST00000342992.10_3_2:179465685-179466102:-|nuORF ENST00000342992.10_3_2:179465685-179466102:-|nuORF ENST00000342992.10_3_2:179465685-179466102:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.9331359863281 3 414.932191 1241.77475 NaN NaN NaN NaN NaN NaN NaN 18.236 1 15.615 15.115 16.115 -2.6215 0 0 0 0.94985 1 9595 9595 5.7834 1.6668 1 44939 11991 29823 30562 52885 52885 0.163528700561983 PEISREQAI 9 Unmodified _PEISREQAI_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.739990234375 2 521.780013 1041.54547 0.63507 0.00033137 2.5788 0.0013456 3.2138 0.0016769 522.7825176928189 60.985 0.31222 60.985 60.811 61.123 0 23 12 3 0 0 0 0.20727 1 33977 33977 7.9102 0 1 574020 44940 1270 29824 30563 52886 52886 0.026362510922808724 PEIVAVYS 8 Unmodified _PEIVAVYS_ 0 0 0 nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38 nc|nan|Q8TB03-2|CXorf38 nc|nan|Q8TB03-2|CXorf38 MSMS AL20221201_MKP_PDAC_01 4 439.2366638183594 2 439.236919 876.459284 NaN NaN NaN NaN NaN NaN NaN 46.986 1 41.906 41.406 42.406 -5.0805 0 0 0 0.60022 1 29111 29111 34.102 1.9855 1 44941 9408 29825 30564 52887 52887 0.01611291257574976 PEIWLSLL 8 Unmodified _PEIWLSLL_ 0 0 0 REV__ENST00000504719.6_1_8:128867450-128867498:+|nuORF REV__ENST00000504719.6_1_8:128867450-128867498:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7850341796875 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 93.103 1 92.646 92.146 93.146 -0.4574 0 0 0 0.97444 1 50884 50884 2.5775 0 1 + 44942 28059 29826 30565 52888 52888 0.06752430079723126 PEKEQCFFFFF 11 Unmodified _PEKEQCFFFFF_ 0 0 0 REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.5594177246094 3 490.225046 1467.65331 -0.31703 -0.00015542 -0.91071 -0.00044645 -1.2277 -0.00060187 490.2245439923714 41.561 0.24701 41.561 41.462 41.709 0 30 12 3 0 0 0 0.6889 2 22423 22423;22448 4.4062 0.28952 1 13230000 + 44943 27695 29827 30566 52889;52890 52889 -0.061811203686829685 PEKEQCFFFFF 11 Unmodified _PEKEQCFFFFF_ 0 0 0 REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2243957519531 3 490.225046 1467.65331 0.11429 5.6029E-05 -1.0092 -0.00049473 -0.89489 -0.0004387 490.22448934379776 47.022 0.48775 47.022 46.781 47.269 0 69 23 4 0 0 0 0.6889 2 25676 25676;25787 4.4062 3.9516 1 32710000 + 44944 27695 29827 30566 52891;52892 52891 -0.061811203686829685 PEKEQCFFFFF 11 Unmodified _PEKEQCFFFFF_ 0 0 0 REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.5594177246094 3 490.225046 1467.65331 -0.31703 -0.00015542 -0.91071 -0.00044645 -1.2277 -0.00060187 490.2245439923714 41.561 0.24701 41.561 41.462 41.709 0 30 12 3 0 0 0 0.29698 1 22423 22423 4.4062 1.7749 1 13230000 + 44945 27695 29827 30566 52893 52893 -0.061811203686829685 PEKEQCFFFFF 11 Unmodified _PEKEQCFFFFF_ 0 0 0 REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.5597534179688 3 490.225046 1467.65331 0.81897 0.00040148 -1.333 -0.00065345 -0.51398 -0.00025197 490.2243964533965 47.409 0.40589 47.057 46.838 47.244 -0.3526 56 19 4 0 0 0 0.71618 1 25471 25471 2.4348 0.97967 1 24095000 + 44946 27695 29827 30566 52894 52894 -0.061811203686829685 PEKEQCFFFFF 11 Unmodified _PEKEQCFFFFF_ 0 0 0 REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF REV__ENST00000481451.1_1_10:124183684-124184496:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 490.225046 1467.65331 -0.074775 -3.6657E-05 -1.5085 -0.00073952 -1.5833 -0.00077618 490.2241924151922 41.936 0.16705 41.63 41.515 41.682 -0.30682 0.034219 -0.00033959 NaN 4.4062 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 6261600 + 44947 27695 29827 30566 -0.061811203686829685 PEKERYMRE 9 Unmodified _PEKERYMRE_ 0 0 0 ENSG00000160294|ENST00000291688|MCM3AP ENSG00000160294|ENST00000291688|MCM3AP ENSG00000160294|ENST00000291688|MCM3AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2052612304688 3 413.204645 1236.59211 0.36651 0.00015145 1.4874 0.00061459 1.8539 0.00076604 413.20526844517724 12.044 0.16708 9.5625 9.4935 9.6606 -2.482 61 40 2 0 0 0 0.5029 1 6057 6057 4.5289 0 1 1644600 44948 6714 29828 30567 52895 52895 -0.016726323480725114 PEKGAEKEIMQ 11 Unmodified _PEKGAEKEIMQ_ 0 0 0 REV__ENSG00000171724|ENST00000302536|VAT1L REV__ENSG00000171724|ENST00000302536|VAT1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8190307617188 2 630.318645 1258.62274 0.24265 0.00015295 -2.6249 -0.0016545 -2.3822 -0.0015016 630.8187377041996 77.717 0.35448 77.77 77.465 77.819 0.052452 35 14 4 0 0 0 0.39848 1 42848 42848 21.59 1.1756 1 6239400 + 44949 22595 29829 30568 52896 52896 0.00377101246294842 PEKKKKKKVVK 11 Unmodified _PEKKKKKKVVK_ 0 0 0 ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1 ENST00000565844.1_1_16:19721758-19726357:-|nuORF ENST00000565844.1_1_16:19721758-19726357:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 447.3110961914062 3 447.309773 1338.90749 NaN NaN NaN NaN NaN NaN NaN 104.39 1 98.217 97.717 98.717 -6.1757 0 0 0 0.94338 1 69916 69916 0.08335 0.08335 1 44950 2153 29830 30569 52897 52897 0.25159314512802666 PEKLATKF 8 Unmodified _PEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2741394042969 2 467.273835 932.533118 0.19906 9.3017E-05 -0.14136 -6.6053E-05 0.057705 2.6964E-05 467.27382335178356 40.079 0.39449 39.782 39.548 39.942 -0.29716 40 18 3 0 0 0 0.072152 1 21130 21130 121.53 36.262 1 9410100 44951 4858 29831 30570 52898 52898 0.06415259419895847 PEKLATKF 8 Unmodified _PEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2736206054688 2 467.273835 932.533118 0.28847 0.00013479 -0.55512 -0.00025939 -0.26665 -0.0001246 467.2738042634108 39.666 0.30909 39.671 39.564 39.873 0.0050583 38 14 4 0 0 0 0.07822 1 21129 21129 114.19 34.59 1 3281500 44952 4858 29831 30570 52899 52899 0.06415259419895847 PEKLATKF 8 Unmodified _PEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2741088867188 2 467.273835 932.533118 0.53307 0.00024909 -1.428 -0.00066725 -0.89489 -0.00041816 467.2738144722829 44.353 1.0335 39.501 39.215 40.249 -4.852 145 76 3 0 0 0 0.07822 3 26915 26915;27044;27175 114.19 34.59 1 70054000 44953 4858 29831 30570 52900;52901;52902 52900 0.06415259419895847 PEKLSVNSHF 10 Unmodified _PEKLSVNSHF_ 0 0 0 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2179260253906 3 386.536501 1156.58767 0.18252 7.055E-05 2.6601 0.0010282 2.8426 0.0010988 386.87165626454225 49.005 0.12176 48.961 48.927 49.049 -0.04369 7 5 2 0 0 0 0.23922 1 26502 26502 1.9064 0.71303 1 898110 44954 282 29832 30571 52903 52903 0.015642265006590605 PEKPPQYIV 9 Unmodified _PEKPPQYIV_ 0 0 0 REV__ENST00000586287.1_1_6:41250094-41254393:-|nuORF REV__ENST00000586287.1_1_6:41250094-41254393:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7973022460938 2 535.797675 1069.5808 0.3783 0.00020269 -0.47064 -0.00025217 -0.092342 -4.9477E-05 535.7977121606433 89.789 0.19573 89.287 89.149 89.345 -0.50171 14 9 2 0 0 0 0.54444 1 49095 49095 4.756 0 1 387970 + 44955 19464 29833 30572 52904 52904 0.04878913620086678 PEKPPYSYI 9 Unmodified _PEKPPYSYI_ 0 0 0 ENSG00000103241|ENST00000262426|FOXF1;ENSG00000137273|ENST00000645481|FOXF2 ENSG00000103241|ENST00000262426|FOXF1 ENSG00000103241|ENST00000262426|FOXF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.78759765625 2 547.281857 1092.54916 0.51477 0.00028173 -0.39046 -0.00021369 0.12431 6.8033E-05 547.281498326917 74.483 1.1412 74.483 73.969 75.111 0 126 55 5 0 0 0 0.41742 2 41355 41355;41584 11.64 3.7301 1 28254000 44956 2115 29834 30573 52905;52906 52905 0.006589208661353041 PEKRCCKG 8 Unmodified _PEKRCCKG_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7259826660156 2 460.725672 919.436791 0.12172 5.6081E-05 0.68538 0.00031577 0.8071 0.00037185 460.7260789304266 21.725 0.25009 21.725 21.566 21.816 0 51 38 2 0 0 0 0.75262 1 10957 10957 12.532 0 1 990490 44957 2325 29835 30574 52907 52907 -0.02614954683349424 PEKRDMHDF 9 Unmodified _PEKRDMHDF_ 0 0 0 ENSG00000166863|ENST00000458521|TAC3;nc|ENSG00000166863|Q9UHF0-2|TAC3 ENSG00000166863|ENST00000458521|TAC3 ENSG00000166863|ENST00000458521|TAC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.1825256347656 3 392.181841 1173.52369 0.45825 0.00017972 0.81907 0.00032122 1.2773 0.00050094 392.18211194262557 53.468 0.4593 53.016 52.783 53.242 -0.45173 43 22 3 0 0 0 0.54444 1 28890 28890 2.7352 0.82882 1 3005400 44958 7541 29836 30575 52908 52908 -0.05612876927943944 PEKRDMHDF 9 Unmodified _PEKRDMHDF_ 0 0 0 ENSG00000166863|ENST00000458521|TAC3;nc|ENSG00000166863|Q9UHF0-2|TAC3 ENSG00000166863|ENST00000458521|TAC3 ENSG00000166863|ENST00000458521|TAC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.181841 1173.52369 0.22498 8.8234E-05 -0.068706 -2.6945E-05 0.15628 6.1289E-05 392.1815272709322 52.894 0.18354 52.894 52.798 52.982 0 -0.061201 -0.00088521 NaN 2.7352 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1174100 44959 7541 29836 30575 -0.05612876927943944 PEKRDMHDF 9 Unmodified _PEKRDMHDF_ 0 0 0 ENSG00000166863|ENST00000458521|TAC3;nc|ENSG00000166863|Q9UHF0-2|TAC3 ENSG00000166863|ENST00000458521|TAC3 ENSG00000166863|ENST00000458521|TAC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.181841 1173.52369 0.45825 0.00017972 0.81907 0.00032122 1.2773 0.00050094 392.18211194262557 53.468 0.4593 53.016 52.783 53.242 -0.45173 0.061201 0.00015929 NaN 2.7352 43 22 3 NaN NaN NaN NaN 0 NaN NaN 0 3005400 44960 7541 29836 30575 -0.05612876927943944 PEKWDILSRRW 11 Unmodified _PEKWDILSRRW_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20221201_MKP_PDAC_01 4 495.9365844726562 3 495.936887 1484.78883 NaN NaN NaN NaN NaN NaN NaN 14.571 1 12.068 11.568 12.568 -2.5029 0 0 0 0.93954 1 7410 7410 2.8433 1.5136 1 44961 5575 29837 30576 52909 52909 0.06582915537160261 PELDPTPM 8 Unmodified _PELDPTPM_ 0 0 0 ENST00000425690.7_1_19:45165089-45165437:+|nuORF ENST00000425690.7_1_19:45165089-45165437:+|nuORF ENST00000425690.7_1_19:45165089-45165437:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.21240234375 2 450.212586 898.410619 NaN NaN NaN NaN NaN NaN NaN 42.909 1 42.895 42.395 43.395 -0.013672 0 0 0 0.97444 1 22987 22987 2.5775 0 1 44962 13166 29838 30577 52910 52910 -0.04264945373836326 PELDSVSGLVK 11 Unmodified _PELDSVSGLVK_ 0 0 0 REV__ENSG00000177551|ENST00000320238|NHLH2 REV__ENSG00000177551|ENST00000320238|NHLH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3161010742188 2 572.316428 1142.6183 0.56459 0.00032312 -0.5556 -0.00031798 0.0089861 5.1429E-06 572.3158547939801 66.969 0.31511 66.969 66.77 67.085 0 23 14 2 0 0 0 0.53099 1 37348 37348 23.79 9.8837 1 2078700 + 44963 22991 29839 30578 52911 52911 0.05269960095074566 PELDSVSGLVK 11 Unmodified _PELDSVSGLVK_ 0 0 0 REV__ENSG00000177551|ENST00000320238|NHLH2 REV__ENSG00000177551|ENST00000320238|NHLH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 572.316428 1142.6183 0.64755 0.0003706 0.5171 0.00029594 1.1646 0.00066654 572.3173338465874 67.446 0.14171 66.964 66.889 67.031 -0.48219 -0.0027075 0.0010984 NaN 23.79 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 604730 + 44964 22991 29839 30578 0.05269960095074566 PELFLQFQRQF 11 Unmodified _PELFLQFQRQF_ 0 0 0 ENST00000532085.1_1_11:118901280-118901526:-|nuORF ENST00000532085.1_1_11:118901280-118901526:-|nuORF ENST00000532085.1_1_11:118901280-118901526:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.9265441894531 3 484.925988 1451.75613 0.20695 0.00010036 0.69763 0.0003383 0.90458 0.00043865 484.92634365440773 14.416 0.10584 11.913 11.864 11.97 -2.5029 33 21 2 0 0 0 0.73114 1 7312 7312 1.3296 0 1 2123900 44965 14923 29840 30579 52912 52912 0.04832708414323861 PELFYTNAKVD 11 Unmodified _PELFYTNAKVD_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MSMS AL20221201_MKP_PDAC_01 4 432.8694152832031 3 432.887199 1295.63977 NaN NaN NaN NaN NaN NaN NaN 17.589 1 15.002 14.502 15.502 -2.5866 0 0 0 0.94011 1 9211 9211 2.4348 0.52841 1 + 44966 21382 29841 30580 52913 52913 0.003773451237293557 PELGSLEL 8 Unmodified _PELGSLEL_ 0 0 0 ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-8|ANK1;IKBKB-ANK1|4|fusion;IKBKB-ANK1|1|fusion;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;IKBKB-ANK1|2|fusion;IKBKB-ANK1|3|fusion;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;IKBKB-ANK1|14|fusion;IKBKB-ANK1|11|fusion;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;IKBKB-ANK1|12|fusion;IKBKB-ANK1|13|fusion;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-10|ANK1;IKBKB-ANK1|9|fusion;IKBKB-ANK1|6|fusion;IKBKB-ANK1|7|fusion;IKBKB-ANK1|8|fusion ENST00000524227.5_1_8:41525962-41555361:-|nuORF ENST00000524227.5_1_8:41525962-41555361:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.2341918945312 2 429.234376 856.454199 -0.66656 -0.00028611 0.86709 0.00037218 0.20053 8.6074E-05 429.2345833213683 33.049 0.27517 33.049 32.908 33.183 0 25 13 3 0 0 0 0.26159 1 17322 17322 60.39 15.983 1 4311100 44967 579 29842 30581 52914 52914 0.02022987394957454 PELHACKE 8 Unmodified _PELHACKE_ 0 0 0 nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1 nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7233581542969 2 463.723652 925.432752 -0.0065224 -3.0246E-06 1.0175 0.00047185 1.011 0.00046882 463.7238814866222 98.839 0.28465 92.663 92.508 92.793 -6.1757 27 21 2 0 0 0 0.36356 1 65752 65752 48.346 6.2513 1 43158000 44968 3213 29843 30582 52915 52915 -0.03294720905410031 PELHFGYLL 9 Unmodified _PELHFGYLL_ 0 0 0 REV__nc|ENSG00000131233|P57773-2|GJA9 REV__nc|ENSG00000131233|P57773-2|GJA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7938232421875 2 544.792392 1087.57023 1.0174 0.00055426 -0.34973 -0.00019053 0.66765 0.00036373 544.7921176851011 66.165 0.67195 66.175 65.973 66.645 0.0095596 120 33 5 0 0 0 0.052168 1 36441 36441 44.407 2.3125 1 451440000 + 44969 19780 29844 30583 52916 52916 0.0299493096565584 PELHRKVHI 9 Unmodified _PELHRKVHI_ 0 0 0 REV__ENSG00000088854|ENST00000252032|DNAAF9 REV__ENSG00000088854|ENST00000252032|DNAAF9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1419982910156 3 376.89273 1127.65636 -0.36218 -0.0001365 -1.1413 -0.00043013 -1.5034 -0.00056663 377.2267683482583 30.882 0.18319 30.882 30.791 30.974 0 13 8 2 0 0 0 0.21822 1 16113 16113 2.4985 0.75621 1 1714900 + 44970 17814 29845 30584 52917 52917 0.09763935591035988 PELIASILY 9 Unmodified _PELIASILY_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7938537597656 2 509.794601 1017.57465 0.26427 0.00013473 -0.81762 -0.00041682 -0.55334 -0.00028209 509.7940846829191 85.215 0.34634 84.713 84.505 84.852 -0.5015 45 18 3 0 0 0 0.06187 1 46666 46666 42.095 6.0504 1 5691700 44971 6435 29846 30585 52918 52918 0.06656395388574765 PELIASILY 9 Unmodified _PELIASILY_ 0 0 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7960815429688 2 509.794601 1017.57465 0.055123 2.8101E-05 -0.092416 -4.7113E-05 -0.037293 -1.9012E-05 509.7946867274466 93.058 0.75964 86.882 86.5 87.26 -6.1757 98 53 3 0 0 0 0.042911 1 61654 61654 48.346 14.243 1 32557000 44972 6435 29846 30585 52919 52919 0.06656395388574765 PELIEYDKL 9 Unmodified _PELIEYDKL_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8692626953125 3 373.869257 1118.58594 -0.17318 -6.4747E-05 1.3441 0.0005025 1.1709 0.00043776 373.8698807685465 42.034 0.2188 41.727 41.619 41.838 -0.30682 17 10 2 0 0 0 0.23158 1 22307 22307 14.405 3.6059 1 9406700 44973 4211 29847 30586 52920 52920 0.03139172692044667 PELKKRGHKV 10 Unmodified _PELKKRGHKV_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;ENST00000464030.1_1_10:96351997-96352234:+|nuORF nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MSMS AL20221201_MKP_PDAC_01 4 596.3692626953125 2 596.369664 1190.72478 NaN NaN NaN NaN NaN NaN NaN 101.82 1 95.641 95.141 96.141 -6.1757 0 0 0 0.95103 1 68347 68347 5.7319 1.4026 1 44974 3486 29848 30587 52921 52921 0.13704180170884683 PELLCGAVAL 10 Unmodified _PELLCGAVAL_ 0 0 0 nc|ENSG00000153066|Q6PKC3-3|TXNDC11;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 nc|ENSG00000153066|Q6PKC3-3|TXNDC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7777404785156 2 493.272978 984.531403 -0.13925 -6.8689E-05 0.96065 0.00047386 0.8214 0.00040517 493.27308300954644 41.886 0.47937 41.886 41.626 42.105 0 58 24 3 0 0 0 0.39779 1 22552 22552 21.747 2.4897 1 11960000 44975 6234 29849 30588 52922 52922 0.03851882339631629 PELLGLCKLNS 11 Unmodified _PELLGLCKLNS_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.7327880859375 3 396.221525 1185.64274 0.84522 0.00033489 0.59081 0.00023409 1.436 0.00056898 396.2210498078816 47.99 0.23073 42.756 42.657 42.888 -5.2339 19 13 2 0 0 0 0.29134 1 29823 29823 6.6235 0 1 7339300 + 44976 19896 29850 30589 52923 52923 0.05734896976946402 PELLGLCKLNS 11 Unmodified _PELLGLCKLNS_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 396.221525 1185.64274 0.39566 0.00015677 2.4478 0.00096986 2.8434 0.0011266 396.55709600656144 42.724 0.060081 42.715 42.665 42.725 -0.0088196 -0.020671 0.0019844 NaN 6.6235 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 3021700 + 44977 19896 29850 30589 0.05734896976946402 PELLKLMCEL 10 Unmodified _PELLKLMCEL_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000475905.5_1_3:195016371-195022834:-|nuORF;nc|ENSG00000131584|Q96P50-1|ACAP3;ACAP3|p.L773Gfs*13|1|0.15|ENSG00000131584|chr1:1293866-1293867|-/CGGGTCC|frameshift_variant;ENSG00000131584|ENST00000354700|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF;nc|ENSG00000131584|Q96P50-4|ACAP3 ENSG00000114331|ENST00000326793|ACAP2;nc|ENSG00000131584|Q96P50-1|ACAP3 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7540893554688 2 594.821978 1187.6294 -0.65403 -0.00038903 2.2815 0.0013571 1.6274 0.00096804 594.823156780513 34.225 0.18437 34.225 34.123 34.308 0 21 9 3 0 0 0 0.64183 1 17950 17950 14.838 6.9281 1 9136300 44978 3030;7 29851 30590 52924 52924 0.04309322873336896 PELLPKRQC 9 Unmodified _PELLPKRQC_ 0 0 0 ENST00000527633.5_1_11:82698720-82698804:-|nuORF ENST00000527633.5_1_11:82698720-82698804:-|nuORF ENST00000527633.5_1_11:82698720-82698804:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8725891113281 3 361.870826 1082.59065 NaN NaN NaN NaN NaN NaN NaN 0.060678 1 -2.4213 -2.9213 -1.9213 -2.482 0 0 0 0.85798 1 32 32 0.23584 0 1 44979 14836 29852 30591 52925 52925 0.05265778353850692 PELLRRRRR 9 Unmodified _PELLRRRRR_ 0 0 0 REV__ENST00000545495.5_1_1:161094264-161102471:-|nuORF REV__ENST00000545495.5_1_1:161094264-161102471:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.3983154296875 2 626.397079 1250.7796 NaN NaN NaN NaN NaN NaN NaN 87.386 1 86.881 86.381 87.381 -0.50423 0 0 0 0.84892 1 47801 47801 1.6526 0.17072 1 + 44980 28650 29853 30592 52926 52926 0.1642461176213601 PELLVEIFA 9 Unmodified _PELLVEIFA_ 0 0 0 ENSG00000103264|ENST00000311635|FBXO31;ENST00000563956.1_1_16:87401549-87417350:-|nuORF ENSG00000103264|ENST00000311635|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7955322265625 2 515.794601 1029.57465 0.34836 0.00017968 -0.0093507 -4.823E-06 0.33901 0.00017486 515.794775328701 92.512 0.26196 92.031 91.903 92.165 -0.48092 18 12 2 0 0 0 0.55144 1 50537 50537 4.3292 1.7518 1 535450 44981 2121 29854 30593 52927 52927 0.06104395388570083 PELMEMFLPA 10 Unmodified _PELMEMFLPA_ 0 0 0 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1 ENSG00000166747|ENST00000299980|AP1G1 ENSG00000166747|ENST00000299980|AP1G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5274963378906 3 393.192578 1176.5559 -0.46704 -0.00018364 0.46233 0.00018178 -0.0047115 -1.8525E-06 393.1925953750707 25.068 0.092394 25.068 25.036 25.128 0 7 4 2 0 0 0 0.69377 1 12851 12851 1.7423 0 1 492300 44982 7526 29855 30594 52928 52928 -0.025312255691233077 PELNSKAI 8 Unmodified _PELNSKAI_ 0 0 0 ENST00000475031.5_1_7:89916952-89929393:+|nuORF ENST00000475031.5_1_7:89916952-89929393:+|nuORF ENST00000475031.5_1_7:89916952-89929393:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 436.2464294433594 2 436.247818 870.481082 NaN NaN NaN NaN NaN NaN NaN 11.923 1 9.4408 8.9408 9.9408 -2.482 0 0 0 0.95973 1 6005 6005 8.5933 0 1 44983 13949 29856 30595 52929 52929 0.04066096006135922 PELPEAPPG 9 Unmodified _PELPEAPPG_ 0 0 0 REV__ENSG00000125966|ENST00000246186|MMP24 REV__ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4657592773438 1 906.456724 905.449448 -0.13539 -0.00012273 -0.23419 -0.00021228 -0.36958 -0.00033501 906.4564060042128 43.637 0.4459 43.637 43.399 43.844 0 75 22 5 0 0 0 0.28047 1 23717 23717 18.135 1.1927 1 812370000 + 44984 19532 29857 30596 52930 52930 -0.007058967478087652 PELQDDFYL 9 Unmodified _PELQDDFYL_ 0 0 0 ENSG00000105325|ENST00000441788|FZR1;nc|ENSG00000105325|Q9UM11|FZR1 ENSG00000105325|ENST00000441788|FZR1 ENSG00000105325|ENST00000441788|FZR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2680053710938 2 570.266404 1138.51826 NaN NaN NaN NaN NaN NaN NaN 64.37 1 64.37 63.87 64.87 0 0 0 0 0.82739 1 35898 35898 4.3292 0 1 44985 2303 29858 30597 52931 52931 -0.045462772387509176 PELQDDIPHI 10 Unmodified _PELQDDIPHI_ 0 0 0 nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2;nc|ENSG00000022556|Q9NX02-3|NLRP2;ENST00000540597.5_1_19:55476735-55501561:+|nuORF nc|ENSG00000022556|Q9NX02-4|NLRP2 nc|ENSG00000022556|Q9NX02-4|NLRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8678588867188 3 392.868027 1175.58225 -0.45587 -0.0001791 0.64985 0.00025531 0.19398 7.6209E-05 393.20242143997945 19.593 0.17001 19.621 19.532 19.702 0.028355 21 16 2 0 0 0 0.6966 1 9878 9878 3.3196 1.7274 1 553620 44986 534 29859 30598 52932 52932 0.0014850291820494022 PELQSLLFV 9 Unmodified _PELQSLLFV_ 0 0 0 ENSG00000255223|ENST00000528616|OR5M11 ENSG00000255223|ENST00000528616|OR5M11 ENSG00000255223|ENST00000528616|OR5M11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.3006591796875 2 523.30005 1044.58555 NaN NaN NaN NaN NaN NaN NaN 72.03 1 71.554 71.054 72.054 -0.47609 0 0 0 0.82396 1 39417 39417 4.756 0 1 44987 10788 29860 30599 52933 52933 0.0650379776286627 PELRRRRYEY 10 Unmodified _PELRRRRYEY_ 0 0 0 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 ENSG00000125652|ENST00000245812|ALKBH7 MSMS AL20221201_MKP_PDAC_01 4 479.5942687988281 3 479.928503 1436.76368 NaN NaN NaN NaN NaN NaN NaN 15.62 1 13.093 12.593 13.593 -2.5273 0 0 0 0.98857 1 8030 8030 1.9064 0.57673 1 44988 3868 29861 30600 52934 52934 0.06276860734624279 PELSEKMFITY 11 Unmodified _PELSEKMFITY_ 0 0 0 REV__nc|ENSG00000050426|Q6P1Q0-3|LETMD1 REV__nc|ENSG00000050426|Q6P1Q0-3|LETMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.3351440429688 2 679.339046 1356.66354 -0.020747 -1.4094E-05 0.77858 0.00052892 0.75784 0.00051483 679.3390151572686 86.115 0.35556 86.115 85.913 86.269 0 33 17 2 0 0 0 0.71618 1 47648 47648 2.7352 0 1 545620 + 44989 28672 29862 30601 52935 52935 -0.0005255743405996327 PELSFGPWL 9 Unmodified _PELSFGPWL_ 0 0 0 REV__ENST00000425597.7_1_15:75312981-75313140:+|nuORF REV__ENST00000425597.7_1_15:75312981-75313140:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7523193359375 2 523.271293 1044.52803 0.74631 0.00039053 0.37589 0.00019669 1.1222 0.00058722 523.2688991896019 36.933 0.57151 36.933 36.588 37.159 0 79 27 5 0 0 0 0.19613 1 19709 19709 12.532 0 1 5517400 + 44990 26896 29863 30602 52936 52936 0.007549555572950339 PELSGPAF 8 Unmodified _PELSGPAF_ 0 0 0 nc|ENSG00000004777|O14559-10|ARHGAP33;nc|ENSG00000004777|O14559-11|ARHGAP33;ENSG00000004777|ENST00000007510|ARHGAP33 nc|ENSG00000004777|O14559-10|ARHGAP33 nc|ENSG00000004777|O14559-10|ARHGAP33 MSMS AL20221201_MKP_PDAC_01 4 409.5382080078125 2 409.208161 816.401769 NaN NaN NaN NaN NaN NaN NaN 18.834 1 16.213 15.713 16.713 -2.6215 0 0 0 0.9706 1 9942 9942 6.3541 1.1234 1 44991 281 29864 30603 52937 52937 -0.013775509480069559 PELSHNRFY 9 Unmodified _PELSHNRFY_ 0 0 0 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.78564453125 2 581.78563 1161.55671 0.19969 0.00011618 1.2464 0.00072512 1.4461 0.0008413 581.785936822166 76.233 0.29342 76.233 76.126 76.419 0 19 11 2 0 0 0 0.56345 1 42402 42402 3.5965 1.2938 1 850410 + 44992 20904 29865 30604 52938 52938 -0.017609268135629463 PELSHNRFY 9 Unmodified _PELSHNRFY_ 0 0 0 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 REV__ENSG00000147614|ENST00000285393|ATP6V0D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 581.78563 1161.55671 0.19969 0.00011618 1.2464 0.00072512 1.4461 0.0008413 581.785936822166 76.233 0.29342 76.233 76.126 76.419 0 0 0 NaN 3.5965 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 850410 + 44993 20904 29865 30604 -0.017609268135629463 PELSIWDYF 9 Unmodified _PELSIWDYF_ 0 0 0 nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 nc|ENSG00000172869|Q9Y485|DMXL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2794799804688 2 585.279315 1168.54408 NaN NaN NaN NaN NaN NaN NaN 35.702 1 35.702 35.202 36.202 0 0 0 0 0.7453 1 18888 18888 7.9102 1.187 1 44994 8264 29866 30605 52939 52939 -0.03345382996462831 PELSLQALY 9 Unmodified _PELSLQALY_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.28125 2 517.281857 1032.54916 0.30644 0.00015851 -1.1177 -0.00057818 -0.8113 -0.00041967 517.2817041372293 65.816 0.44862 65.816 65.528 65.976 0 47 21 3 0 0 0 0.070838 1 36691 36691 39.957 5.5556 1 8863500 + 44995 17421 29867 30606 52940 52940 0.03418920866147346 PELSSTHATT 10 Unmodified _PELSSTHATT_ 0 0 0 REV__ENST00000392845.7_1_3:155571713-155572157:-|nuORF REV__ENST00000392845.7_1_3:155571713-155572157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2545776367188 2 522.253828 1042.4931 0.94698 0.00049457 0.76476 0.0003994 1.7117 0.00089397 522.2539379578873 54.143 0.47542 54.143 53.876 54.352 0 54 21 3 0 0 0 0.52888 1 30045 30045 14.838 0.93222 1 75363000 + 44996 26405 29868 30607 52941 52941 -0.026443320413363836 PELTNILIY 9 Unmodified _PELTNILIY_ 0 0 0 REV__ENSG00000185115|ENST00000332303|NSMCE3 REV__ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.5828857421875 2 538.305332 1074.59611 0.54642 0.00029414 0.5809 0.0003127 1.1273 0.00060685 538.305486363067 73.037 0.38898 73.037 72.84 73.229 0 29 17 3 0 0 0 0.51218 1 40561 40561 6.7232 0 1 923170 + 44997 23475 29869 30608 52942 52942 0.061797804173238546 PELVEPPP 8 Unmodified _PELVEPPP_ 0 0 0 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2364807128906 2 439.236919 876.459284 -0.091291 -4.0099E-05 1.0623 0.0004666 0.97101 0.0004265 439.23727780337845 41.807 0.19176 41.807 41.709 41.901 0 16 9 2 0 0 0 0.55032 1 22598 22598 30.225 0 1 3353400 + 44998 20979 29870 30609 52943 52943 0.01611291257574976 PELVEPPP 8 Unmodified _PELVEPPP_ 0 0 0 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 439.236919 876.459284 -0.091291 -4.0099E-05 1.0623 0.0004666 0.97101 0.0004265 439.23727780337845 41.807 0.19176 41.807 41.709 41.901 0 0 0 NaN 30.225 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3353400 + 44999 20979 29870 30609 0.01611291257574976 PELVGPGTFS 10 Unmodified _PELVGPGTFS_ 0 0 0 REV__ENSG00000204859|ENST00000377674|ZBTB48 REV__ENSG00000204859|ENST00000377674|ZBTB48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2583923339844 2 502.258382 1002.50221 0.95746 0.00048089 -0.66992 -0.00033647 0.28754 0.00014442 502.2580284880572 54.123 0.40702 54.123 53.923 54.33 0 47 18 3 0 0 0 0.35903 1 30085 30085 24.021 0.87215 1 30526000 + 45000 24203 29871 30610 52944 52944 0.0010606131502299831 PELVSPAQGPL 11 Unmodified _PELVSPAQGPL_ 0 0 0 ENST00000361866.7_1_21:47424117-47424327:+|nuORF ENST00000361866.7_1_21:47424117-47424327:+|nuORF ENST00000361866.7_1_21:47424117-47424327:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.873291015625 3 369.873001 1106.59717 -0.44539 -0.00016474 0.47485 0.00017563 0.029456 1.0895E-05 369.8734605843568 20.269 0.29998 20.269 20.057 20.357 0 33 20 3 0 0 0 0.6889 1 10181 10181 4.4062 0 1 1030000 45001 12194 29872 30611 52945 52945 0.04813994786195508 PELWALQS 8 Unmodified _PELWALQS_ 0 0 0 CTNND2|p.R411W|1|0.21|ENSG00000169862|chr5:11364837-11364837|G/A|missense_variant CTNND2|p.R411W|1|0.21|ENSG00000169862|chr5:11364837-11364837|G/A|missense_variant CTNND2|p.R411W|1|0.21|ENSG00000169862|chr5:11364837-11364837|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2481994628906 2 472.247818 942.481082 -0.16146 -7.6248E-05 -0.67469 -0.00031862 -0.83615 -0.00039487 472.2476606547152 24.577 0.20698 24.577 24.49 24.697 0 29 12 3 0 0 0 0.42423 1 12550 12550 42.095 0 1 3082300 45002 223 29873 30612 52946 52946 0.007540960061305668 PEMALKSEDC 10 Unmodified _PEMALKSEDC_ 0 0 0 REV__ENSG00000156273|ENST00000286800|BACH1 REV__ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8299255371094 3 374.831708 1121.4733 -0.49746 -0.00018646 -3.3805 -0.0012671 -3.878 -0.0014536 374.83034242232526 28.919 0.2427 28.919 28.82 29.063 0 20 11 2 0 0 0 0.67459 1 14955 14955 5.4027 0 1 983080 + 45003 21325 29874 30613 52947 52947 -0.08258167367944225 PEMIIVSD 8 Unmodified _PEMIIVSD_ 0 0 0 ENST00000559314.5_1_14:23767304-23767721:-|nuORF ENST00000559314.5_1_14:23767304-23767721:-|nuORF ENST00000559314.5_1_14:23767304-23767721:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.1896667480469 2 452.228236 902.44192 0.75321 0.00034062 -3.1419 -0.0014208 -2.3887 -0.0010802 452.22691757495267 50.229 0.22005 49.837 49.711 49.931 -0.3923 20 10 3 0 0 0 8.7369 1 27018 27018 9.3474 6.4582 1 1823700 45004 15293 29875 30614 52948 52948 -0.013203723397396061 PEMMAVQQQL 10 Unmodified _PEMMAVQQQL_ 0 0 0 ENST00000266458.9_1_12:10374753-10374867:+|nuORF ENST00000266458.9_1_12:10374753-10374867:+|nuORF ENST00000266458.9_1_12:10374753-10374867:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 392.192626953125 3 392.191348 1173.55222 NaN NaN NaN NaN NaN NaN NaN 38.605 1 34.236 33.736 34.736 -4.3689 0 0 0 0.92825 1 22795 22795 6.1918 0.78914 1 45005 11342 29876 30615 52949 52949 -0.027618953429964677 PEMTATEALL 10 Unmodified _PEMTATEALL_ 0 0 0 ENST00000555747.1_1_14:101193339-101194797:+|nuORF ENST00000555747.1_1_14:101193339-101194797:+|nuORF ENST00000555747.1_1_14:101193339-101194797:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.1849060058594 3 359.182847 1074.52671 NaN NaN NaN NaN NaN NaN NaN 77.636 1 71.46 70.96 71.96 -6.1757 0 0 0 0.92825 1 50789 50789 3.5871 0 1 45006 15233 29877 30616 52950 52950 -0.007570465937760673 PENCNFRCI 9 Unmodified _PENCNFRCI_ 0 0 0 ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-3|MCF2 ENSG00000101977|ENST00000519895|MCF2 ENSG00000101977|ENST00000519895|MCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8280029296875 3 365.828521 1094.46373 0.86846 0.00031771 -2.5763 -0.00094248 -1.7078 -0.00062477 365.8273828392109 39.986 0.18549 35.456 35.291 35.477 -4.5294 17 12 2 0 0 0 0.50598 1 23815 23815 7.1017 3.5052 1 28070000 45007 2004 29878 30617 52951 52951 -0.0797189086281378 PENRLHKEA 9 Unmodified _PENRLHKEA_ 0 0 0 ENST00000401028.2_1_1:91794740-91794929:+|nuORF ENST00000401028.2_1_1:91794740-91794929:+|nuORF ENST00000401028.2_1_1:91794740-91794929:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.1965942382812 3 365.196478 1092.56761 NaN NaN NaN NaN NaN NaN NaN 87.584 1 81.408 80.908 81.908 -6.1757 0 0 0 0.82739 1 57760 57760 2.4985 0.59211 1 45008 12881 29879 30618 52952 52952 0.02502475560709172 PENVRKNRY 9 Unmodified _PENVRKNRY_ 0 0 0 ENST00000483617.5_2_2:131116478-131116547:+|nuORF;ENST00000420717.5_1_2:131116478-131119809:+|nuORF;ENSG00000072135|ENST00000175756|PTPN18 ENST00000483617.5_2_2:131116478-131116547:+|nuORF ENST00000483617.5_2_2:131116478-131116547:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.791259765625 2 588.317628 1174.6207 0.66573 0.00039166 1.8916 0.0011129 2.5573 0.0015045 588.3184541352059 74.412 0.25634 73.936 73.741 73.997 -0.47588 14 10 2 0 0 0 0.209 1 40665 40665 7.2892 2.5332 1 788220 45009 1073 29880 30619 52953 52953 0.04037853343379538 PENWEHAKYKW 11 Unmodified _PENWEHAKYKW_ 0 0 0 nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532|DMD;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-2|DMD nc|ENSG00000198947|P11532-4|DMD nc|ENSG00000198947|P11532-4|DMD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2720336914062 3 496.573726 1486.69935 1.079 0.00053581 -0.23434 -0.00011637 0.84467 0.00041944 496.57334780185147 46.402 0.22795 46.369 46.224 46.452 -0.033417 24 10 3 0 0 0 0.30445 1 24949 24949 4.4062 3.9516 1 3111800 45010 10207 29881 30620 52954 52954 -0.024533391422210116 PENYQLVI 8 Unmodified _PENYQLVI_ 0 0 0 nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2613830566406 2 488.260925 974.507297 0.82988 0.0004052 0.36285 0.00017716 1.1927 0.00058236 488.2611032693743 81.945 0.41928 81.449 81.21 81.629 -0.4952 43 15 4 0 0 0 0.48669 1 44919 44919 36.044 6.9626 1 3596500 45011 16093 29882 30621 52955 52955 0.01902365177613774 PENYQWENW 9 Unmodified _PENYQWENW_ 0 0 0 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.2675170898438 2 633.264727 1264.5149 NaN NaN NaN NaN NaN NaN NaN 80.056 1 80.056 79.556 80.556 0 0 0 0 0.85737 1 44456 44456 0.6015 0.14316 1 45012 8727 29883 30622 52956 52956 -0.1067752729275071 PEPEETWVAE 10 Unmodified _PEPEETWVAE_ 0 0 0 nc|ENSG00000286014|P0DUD4|SPDYE15;nc|ENSG00000184616|P0DUX1|SPDYE12;ENSG00000273520|ENST00000333385|SPDYE8;ENSG00000262461|ENST00000575125|SPDYE9;ENSG00000186645|ENST00000671986|SPDYE17;ENSG00000214300|ENST00000332397|SPDYE3 nc|ENSG00000286014|P0DUD4|SPDYE15 nc|ENSG00000286014|P0DUD4|SPDYE15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5142822265625 3 396.180271 1185.51898 -0.51316 -0.0002033 0.21841 8.653E-05 -0.29475 -0.00011677 396.1802782068377 19.629 0.6334 19.629 19.326 19.959 0 112 80 2 0 0 0 0.71042 1 9778 9778 1.7423 1.7423 1 1158000 45013 9492 29884 30623 52957 52957 -0.06635482589740604 PEPGAPEEL 9 Unmodified _PEPGAPEEL_ 0 0 0 REV__ENSG00000184814|ENST00000329447|PRR23B REV__ENSG00000184814|ENST00000329447|PRR23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.451904296875 1 938.446553 937.439277 0.60916 0.00057166 -0.89093 -0.00083609 -0.28177 -0.00026443 938.445702543457 36.545 0.30175 36.545 36.388 36.69 0 32 14 3 0 0 0 0.55144 1 19413 19413 4.3292 4.3292 1 5616100 + 45014 23445 29885 30624 52958 52958 -0.03194504473037796 PEPGPRRF 8 Unmodified _PEPGPRRF_ 0 0 0 REV__ENSG00000137218|ENST00000373018|FRS3 REV__ENSG00000137218|ENST00000373018|FRS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2567443847656 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 16.589 1 16.594 16.094 17.094 0.0050564 0 0 0 0.97444 1 8325 8325 2.5775 0 1 + 45015 20223 29886 30625 52959 52959 0.02447740194418202 PEPIGAAKSF 10 Unmodified _PEPIGAAKSF_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7637634277344 2 508.7742 1015.53385 0.73527 0.00037409 -1.0008 -0.00050917 -0.26551 -0.00013509 508.7740717989893 73.876 0.88739 67.701 67.326 68.213 -6.1757 160 44 5 0 0 0 0.60623 1 48084 48084 10.824 0 1 121370000 45016 6520 29887 30626 52960 52960 0.02670054068948957 PEPLFPYSF 9 Unmodified _PEPLFPYSF_ 0 0 0 ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15 ENST00000549436.5_1_2:144276854-144461094:+|nuORF ENST00000549436.5_1_2:144276854-144461094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7698974609375 2 548.771126 1095.5277 0.023025 1.2636E-05 -0.28413 -0.00015592 -0.26111 -0.00014329 548.7710792975408 45.69 0.15951 45.366 45.287 45.447 -0.32425 13 8 2 0 0 0 0.41742 1 24415 24415 11.64 0 1 24675000 45017 1172 29888 30627 52961 52961 -0.016244641625689837 PEPLFPYSF 9 Unmodified _PEPLFPYSF_ 0 0 0 ENST00000549436.5_1_2:144276854-144461094:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15 ENST00000549436.5_1_2:144276854-144461094:+|nuORF ENST00000549436.5_1_2:144276854-144461094:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.771126 1095.5277 0.16853 9.2483E-05 -1.0655 -0.0005847 -0.89695 -0.00049222 548.7702313044944 45.447 0.24218 45.447 45.324 45.567 0 0.04066 -0.00041697 NaN 11.64 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 12672000 45018 1172 29888 30627 -0.016244641625689837 PEPLGERLY 9 Unmodified _PEPLGERLY_ 0 0 0 ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 ENSG00000108094|ENST00000374749|CUL2 ENSG00000108094|ENST00000374749|CUL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7526245117188 2 537.284931 1072.55531 0.47362 0.00025447 -1.7623 -0.00094688 -1.2887 -0.00069241 537.2839714738661 52.939 0.24146 52.939 52.82 53.061 0 20 11 2 0 0 0 0.20727 1 29373 29373 7.9102 0 1 3988100 45019 2546 29889 30628 52962 52962 0.021934390976639406 PEPMGARLVVR 11 Unmodified _PEPMGARLVVR_ 0 0 0 ENST00000454754.5_2_22:24407711-24431932:+|nuORF ENST00000454754.5_2_22:24407711-24431932:+|nuORF ENST00000454754.5_2_22:24407711-24431932:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.901123046875 3 408.900897 1223.68086 0.77899 0.00031853 0.16754 6.8506E-05 0.94652 0.00038703 408.9010687085513 18.223 0.46695 15.602 15.386 15.853 -2.6215 59 37 2 0 0 0 0.50515 1 9542 9542 9.2438 1.2984 1 2717100 45020 13575 29890 30629 52963 52963 0.07796827682250296 PEPMGARLVVR 11 Unmodified _PEPMGARLVVR_ 0 0 0 ENST00000454754.5_2_22:24407711-24431932:+|nuORF ENST00000454754.5_2_22:24407711-24431932:+|nuORF ENST00000454754.5_2_22:24407711-24431932:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 408.900897 1223.68086 -0.19311 -7.8962E-05 -1.5707 -0.00064226 -1.7638 -0.00072122 408.900133735216 15.9 0.071389 15.905 15.871 15.943 0.0050564 0.15153 -0.0020554 NaN 9.2438 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 264490 45021 13575 29890 30629 0.07796827682250296 PEPQSQAFPG 10 Unmodified _PEPQSQAFPG_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.755126953125 2 529.251089 1056.48762 0.75116 0.00039755 -2.7893 -0.0014762 -2.0381 -0.0010787 529.2512599462756 67.455 0.25325 61.279 61.035 61.288 -6.1757 18 13 2 0 0 0 0.22489 1 43932 43932 18.146 7.3224 1 69500000 45022 3538 29891 30630 52964 52964 -0.03836010833151704 PEPQSQAFPG 10 Unmodified _PEPQSQAFPG_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 529.251089 1056.48762 0.48933 0.00025898 -0.84684 -0.00044819 -0.35751 -0.00018921 529.250330572396 61.267 0.4523 61.267 61.024 61.476 0 -0.0060124 8.6851E-05 NaN 18.146 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2028400 45023 3538 29891 30630 -0.03836010833151704 PEPRPVCE 8 Unmodified _PEPRPVCE_ 0 0 0 ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7239074707031 2 463.723652 925.432752 -0.0065224 -3.0246E-06 1.0175 0.00047185 1.011 0.00046882 463.7238814866222 98.839 0.28465 92.663 92.508 92.793 -6.1757 27 21 2 0 0 0 0.42423 1 65555 65555 42.095 0 1 43158000 45024 11002 29892 30631 52965 52965 -0.03294720905410031 PEPRPVCEL 9 Unmodified _PEPRPVCEL_ 0 0 0 ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.265380859375 2 520.265684 1038.51682 -0.19914 -0.00010361 0.5844 0.00030404 0.38526 0.00020044 520.2659805412435 84.575 0.5573 84.638 84.257 84.814 0.063179 26 24 2 0 0 0 0.094149 1 46775 46775 34.402 3.1334 1 16486000 45025 11002 29893 30632 52966 52966 -0.0009018980849759828 PEPSRDGKRH 10 Unmodified _PEPSRDGKRH_ 0 0 0 REV__ENSG00000124942|ENST00000378024|AHNAK REV__ENSG00000124942|ENST00000378024|AHNAK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2050476074219 3 393.539016 1177.59522 -0.29904 -0.00011768 0.73339 0.00028862 0.43435 0.00017093 393.53939818240946 36.183 0.25146 36.208 36.075 36.326 0.024967 16 10 2 0 0 0 0.2384 1 19147 19147 5.4027 1.2861 1 3501000 + 45026 19475 29894 30633 52967 52967 0.01352378820956801 PEPVSTSVSHY 11 Unmodified _PEPVSTSVSHY_ 0 0 0 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.290771484375 2 601.788035 1201.56152 0.48097 0.00028944 2.304 0.0013865 2.785 0.001676 602.2902994617973 68.345 0.82278 67.864 67.577 68.399 -0.48071 50 37 2 0 0 0 0.65108 1 37420 37420 8.7454 0.83525 1 4644900 45027 8566 29895 30634 52968 52968 -0.031200874614341956 PEPWNRLSPN 10 Unmodified _PEPWNRLSPN_ 0 0 0 ENSG00000185633|ENST00000554503|NDUFA4L2;ENST00000555173.1_1_12:57629348-57630441:-|nuORF ENSG00000185633|ENST00000554503|NDUFA4L2 ENSG00000185633|ENST00000554503|NDUFA4L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.30419921875 2 605.304187 1208.59382 -1.1261 -0.00068165 0.28022 0.00016962 -0.84592 -0.00051204 605.3040824419782 32.203 0.39408 32.203 31.94 32.334 0 48 19 4 0 0 0 0.46514 1 16772 16772 18.146 0 1 2740600 45028 9392 29896 30635 52969 52969 -0.0021325526779492066 PEQEEQMW 8 Unmodified _PEQEEQMW_ 0 0 0 ENST00000564646.1_1_16:89005738-89005978:-|nuORF ENST00000564646.1_1_16:89005738-89005978:-|nuORF ENST00000564646.1_1_16:89005738-89005978:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7473754882812 2 538.721307 1075.42806 -0.14737 -7.939E-05 -0.66721 -0.00035944 -0.81457 -0.00043883 538.7202759075496 23.606 0.2108 23.606 23.448 23.659 0 17 10 2 0 0 0 8.7369 1 11989 11989 8.5933 0 1 287680 45029 15391 29897 30636 52970 52970 -0.10663649838807032 PEQGEPLL 8 Unmodified _PEQGEPLL_ 0 0 0 REV__ENST00000375772.7_1_X:51546193-51638164:+|nuORF REV__ENST00000375772.7_1_X:51546193-51638164:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 882.67822265625 1 882.456724 881.449448 -0.11334 -0.00010002 4.406 0.0038881 4.2926 0.0037881 882.4609741803771 83.273 0.14534 82.776 82.719 82.864 -0.49751 7 5 2 0 0 0 0.80676 2 45578 45578;45600 2.5775 0 1 360480 + 45030 26213 29898 30637 52971;52972 52971 0.0039810325220059894 PEQGEPLL 8 Unmodified _PEQGEPLL_ 0 0 0 REV__ENST00000375772.7_1_X:51546193-51638164:+|nuORF REV__ENST00000375772.7_1_X:51546193-51638164:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 882.67822265625 1 882.456724 881.449448 -0.11334 -0.00010002 4.406 0.0038881 4.2926 0.0037881 882.4609741803771 83.273 0.14534 82.776 82.719 82.864 -0.49751 7 5 2 0 0 0 8.7369 1 45578 45578 2.5775 0 1 360480 + 45031 26213 29898 30637 52973 52973 0.0039810325220059894 PEQPNWEAPP 10 Unmodified _PEQPNWEAPP_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|8|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|8|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|8|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7694702148438 2 582.769645 1163.52474 1.1834 0.00068965 -0.7028 -0.00040957 0.4806 0.00028008 582.768909096898 65.426 0.25868 65.426 65.303 65.562 7.6294E-06 21 11 2 0 0 0 0.56348 1 35844 35844 13.042 0 1 8355800 45032 15962 29899 30638 52974 52974 -0.0504833928739572 PEQPPPLELF 10 Unmodified _PEQPPPLELF_ 0 0 0 REV__ENSG00000179300|ENST00000321110|RTL3 REV__ENSG00000179300|ENST00000321110|RTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5422668457031 3 389.541252 1165.60193 0.90613 0.00035298 1.3226 0.00051521 2.2287 0.00086818 389.5416680603592 63.93 0.29518 63.92 63.741 64.037 -0.010532 31 14 3 0 0 0 0.63399 1 34987 34987 5.4027 0 1 4701000 + 45033 23092 29900 30639 52975 52975 0.02574878928930957 PEQQHLLI 8 Unmodified _PEQQHLLI_ 0 0 0 ENST00000492361.1_1_1:12227075-12267074:+|nuORF;ENSG00000028137|ENST00000376259|TNFRSF1B ENST00000492361.1_1_1:12227075-12267074:+|nuORF ENST00000492361.1_1_1:12227075-12267074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2742614746094 2 489.274367 976.53418 -0.27801 -0.00013602 -0.19026 -9.3087E-05 -0.46827 -0.00022911 489.27445092822643 55.244 0.31234 55.244 55.077 55.389 0 23 13 2 0 0 0 0.50673 1 30674 30674 34.102 3.4659 1 3925500 45034 570 29901 30640 52976 52976 0.044974737888196614 PEQQHLLI 8 Unmodified _PEQQHLLI_ 0 0 0 ENST00000492361.1_1_1:12227075-12267074:+|nuORF;ENSG00000028137|ENST00000376259|TNFRSF1B ENST00000492361.1_1_1:12227075-12267074:+|nuORF ENST00000492361.1_1_1:12227075-12267074:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.274367 976.53418 0.48124 0.00023546 -1.6917 -0.00082771 -1.2105 -0.00059225 489.27338471482545 55.656 0.18998 55.178 55.069 55.259 -0.47798 -0.032941 -0.0010409 NaN 34.102 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 574610 45035 570 29901 30640 0.044974737888196614 PEQQQILFW 9 Unmodified _PEQQQILFW_ 0 0 0 nc|ENSG00000262628|P47884|OR1D4 nc|ENSG00000262628|P47884|OR1D4 nc|ENSG00000262628|P47884|OR1D4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.33740234375 2 594.806031 1187.59751 0.56895 0.00033842 0.51215 0.00030463 1.0811 0.00064304 595.3077416278262 67.479 0.27298 66.997 66.802 67.075 -0.48218 18 11 2 0 0 0 0.21564 1 36769 36769 3.9444 0.3479 1 1004000 45036 16596 29902 30641 52977 52977 0.011214145060648661 PEQRGIFTI 9 Unmodified _PEQRGIFTI_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT;ENST00000490468.5_1_21:47744088-47766690:+|nuORF ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7589111328125 2 530.792924 1059.57129 -0.14132 -7.5014E-05 -4.169 -0.0022129 -4.3103 -0.0022879 530.7909007884057 78.623 0.24834 78.137 77.99 78.238 -0.48595 15 9 2 0 0 0 0.20139 1 43102 43102 10.824 2.9138 1 427590 45037 6716 29903 30642 52978 52978 0.043891453345850096 PEQRRPSL 8 Unmodified _PEQRRPSL_ 0 0 0 ENST00000586944.5_1_19:806325-806721:+|nuORF ENST00000586944.5_1_19:806325-806721:+|nuORF ENST00000586944.5_1_19:806325-806721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7752075195312 2 491.775065 981.535577 0.4451 0.00021889 0.56244 0.0002766 1.0075 0.00049548 491.77545477615496 28.417 0.18751 28.447 28.332 28.52 0.029564 15 7 3 0 0 0 0.62219 1 14788 14788 24.021 2.4836 1 3114600 45038 15631 29904 30643 52979 52979 0.044071078775687056 PEQVAQLGYA 10 Unmodified _PEQVAQLGYA_ 0 0 0 ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF ENST00000578774.1_1_17:38517261-38520175:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7470092773438 2 538.274564 1074.53457 -0.14197 -7.642E-05 0.92604 0.00049846 0.78407 0.00042204 538.2757093227434 22.908 0.15395 22.908 22.861 23.015 0 12 8 2 0 0 0 0.23566 1 11696 11696 7.2892 1.5288 1 631000 45039 15544 29905 30644 52980 52980 0.0002884871801143163 PEQVDLYQF 9 Unmodified _PEQVDLYQF_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7750244140625 2 569.774396 1137.53424 0.59799 0.00034072 0.3599 0.00020506 0.95789 0.00054578 569.7743960391396 90.865 0.49815 90.371 90.139 90.637 -0.49457 112 33 4 0 0 0 0.54444 1 49786 49786 4.756 0 1 27798000 45040 7561 29906 30645 52981 52981 -0.029025710018686368 PEQVTVNIL 9 Unmodified _PEQVTVNIL_ 0 0 0 REV__nc|ENSG00000113269|Q86XS8-2|RNF130 REV__nc|ENSG00000113269|Q86XS8-2|RNF130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7880859375 2 506.787307 1011.56006 0.1422 7.2065E-05 0.5644 0.00028603 0.7066 0.0003581 506.7879437340603 68.353 0.28468 67.872 67.725 68.01 -0.48071 18 12 2 0 0 0 0.28023 1 37343 37343 18.146 2.2992 1 1575700 + 45041 18857 29907 30646 52982 52982 0.054743232404462105 PEQWSSLLY 9 Unmodified _PEQWSSLLY_ 0 0 0 ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-3|RC3H2;nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2 ENSG00000056586|ENST00000357244|RC3H2;nc|ENSG00000056586|Q9HBD1-2|RC3H2 nc|ENSG00000056586|Q9HBD1-2|RC3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.779296875 2 561.776939 1121.53933 0.3063 0.00017207 2.351 0.0013207 2.6573 0.0014928 561.7784838971115 45.631 0.2255 45.631 45.497 45.722 0 28 11 3 0 0 0 0.23158 1 24914 24914 20.454 3.5113 1 8468800 45042 786;16033 29908 30647 52983 52983 -0.01658267139214331 PERCPEESDS 10 Unmodified _PERCPEESDS_ 0 0 0 REV__ENST00000565176.5_3_16:67565474-67572402:+|nuORF REV__ENST00000565176.5_3_16:67565474-67572402:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.4881286621094 3 383.488999 1147.44517 NaN NaN NaN NaN NaN NaN NaN 61.975 1 61.487 60.987 61.987 -0.48764 0 0 0 0.97302 1 33757 33757 1.7423 0 1 + 45043 28906 29909 30648 52984 52984 -0.12265774023694576 PEREENGDE 9 Unmodified _PEREENGDE_ 0 0 0 PRR3|p.T26N|1|0.05|ENSG00000204576|chr6:30557421-30557421|C/A|missense_variant PRR3|p.T26N|1|0.05|ENSG00000204576|chr6:30557421-30557421|C/A|missense_variant PRR3|p.T26N|1|0.05|ENSG00000204576|chr6:30557421-30557421|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.8171691894531 3 358.815992 1073.42615 NaN NaN NaN NaN NaN NaN NaN 76.504 1 76.552 76.052 77.052 0.047943 0 0 0 0.85798 1 42214 42214 0.23584 0 1 45044 16694 29910 30649 52985 52985 -0.10762987323073503 PERHFRFN 8 Unmodified _PERHFRFN_ 0 0 0 nc|ENSG00000179168|Q86UU5-2|GGN;ENSG00000179168|ENST00000334928|GGN nc|ENSG00000179168|Q86UU5-2|GGN nc|ENSG00000179168|Q86UU5-2|GGN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.308349609375 2 551.780682 1101.54681 1.0878 0.00060024 4.1279 0.0022777 5.2157 0.0028779 551.7834321899822 79.601 0.15784 79.111 79.03 79.188 -0.48933 11 6 2 0 0 0 8.7369 1 43630 43630 2.3027 0.4585 1 536310 45045 8818 29911 30650 52986 52986 9.929971724886855E-05 PERLYIQVF 9 Unmodified _PERLYIQVF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8856506347656 3 388.885241 1163.63389 1.34 0.00052112 -1.4393 -0.00055971 -0.099232 -3.859E-05 388.88513735287097 80.196 1.1298 74.02 73.148 74.278 -6.1757 165 67 3 0 0 0 0.31356 2 52636 52380;52636 16.566 2.644 1 100790000 45046 4010 29912 30651 52987;52988 52988 0.058622914027409934 PERRRCHYW 9 Unmodified _PERRRCHYW_ 0 0 0 ENST00000490065.5_1_1:243419475-243433494:+|nuORF;ENST00000366541.7_1_1:243419456-243433497:+|nuORF ENST00000490065.5_1_1:243419475-243433494:+|nuORF ENST00000490065.5_1_1:243419475-243433494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8824462890625 3 434.880607 1301.61999 NaN NaN NaN NaN NaN NaN NaN 75.732 1 75.78 75.28 76.28 0.047943 0 0 0 0.84564 1 41768 41768 1.0715 0.3738 1 45047 12202 29913 30652 52989 52989 -0.018752645773247423 PERWLLRPEAF 11 Unmodified _PERWLLRPEAF_ 0 0 0 ENST00000459686.5_1_17:27945497-27949916:-|nuORF;ENST00000584602.1_1_17:27946777-27949916:-|nuORF ENST00000459686.5_1_17:27945497-27949916:-|nuORF ENST00000459686.5_1_17:27945497-27949916:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.3888549804688 2 707.385511 1412.75647 0.70844 0.00050114 1.8219 0.0012888 2.5303 0.0017899 707.3861937086881 101.27 0.080719 95.098 95.064 95.144 -6.1757 7 4 2 0 0 0 0.59689 1 67950 67950 11.495 0.67078 1 20022000 45048 13630 29914 30653 52990 52990 0.06660128134171828 PESAEYLAAL 10 Unmodified _PESAEYLAAL_ 0 0 0 ENSG00000066735|ENST00000423312|KIF26A ENSG00000066735|ENST00000423312|KIF26A ENSG00000066735|ENST00000423312|KIF26A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2692260742188 2 532.268947 1062.52334 0.51252 0.0002728 0.020591 1.096E-05 0.53311 0.00028376 532.2688515250682 66.595 1.0821 66.595 66.05 67.132 0 146 49 4 0 0 0 0.42068 1 36968 36968 20.454 2.3073 1 21488000 45049 942 29915 30654 52991 52991 -0.005419733761527823 PESAGVAP 8 Unmodified _PESAGVAP_ 0 0 0 REV__ENST00000355621.7_1_7:129474290-129474350:-|nuORF REV__ENST00000355621.7_1_7:129474290-129474350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 728.3168334960938 1 727.362096 726.354819 0.091895 6.6841E-05 -2.0076 -0.0014603 -1.9157 -0.0013934 727.3635169951752 75.221 0.081581 75.221 75.168 75.25 0 5 3 2 0 0 0 0.80992 1 41830 41830 0.69038 0 1 156160 + 45050 25811 29916 30655 52992 52992 -0.019304104991533677 PESASSPPVI 10 Unmodified _PESASSPPVI_ 0 0 0 ENSG00000082212|ENST00000321341|ME2;ENST00000426028.2_1_9:29824743-29824800:-|nuORF ENSG00000082212|ENST00000321341|ME2 ENSG00000082212|ENST00000321341|ME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2563781738281 2 492.25584 982.497126 0.81012 0.00039879 -0.056582 -2.7853E-05 0.75354 0.00037093 492.255945796411 54.306 0.50196 54.306 54.051 54.553 0 60 22 3 0 0 0 0.31022 1 30273 30273 26.884 1.4843 1 18185000 45051 1341 29917 30656 52993 52993 0.005177574523941075 PESDEDEN 8 Unmodified _PESDEDEN_ 0 0 0 REV__ENSG00000081154|ENST00000265260|PCNP REV__ENSG00000081154|ENST00000265260|PCNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.6669921875 2 467.667251 933.31995 0.67732 0.00031676 -1.1013 -0.00051503 -0.42395 -0.00019827 467.66652702327457 56.509 0.45272 50.532 50.338 50.79 -5.9769 30 25 2 0 0 0 0.79669 1 36101 36101 8.5933 0 1 18687000 + 45052 17685 29918 30657 52994 52994 -0.1493774288841223 PESFAALLLY 10 Unmodified _PESFAALLLY_ 0 0 0 ENST00000437099.6_1_17:9819894-9820095:-|nuORF ENST00000437099.6_1_17:9819894-9820095:-|nuORF ENST00000437099.6_1_17:9819894-9820095:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3104858398438 2 562.305332 1122.59611 0.47485 0.00026701 0.32917 0.00018509 0.80401 0.0004521 562.305467124128 93.013 1.2801 86.837 86.115 87.395 -6.1757 311 85 5 0 0 0 0.24625 1 61918 61918 30.637 0.79596 1 1041899999.9999999 45053 13342 29919 30658 52995 52995 0.03971780417282389 PESGCCAG 8 Unmodified _PESGCCAG_ 0 0 0 REV__ENST00000564313.1_1_16:2141057-2141975:-|nuORF REV__ENST00000564313.1_1_16:2141057-2141975:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1245727539062 2 362.125457 722.23636 0.15739 5.6995E-05 -1.7756 -0.00064298 -1.6182 -0.00058598 362.1245705881264 61.411 0.2844 61.411 61.171 61.455 0 16 12 2 0 0 0 0.80676 1 34229 34229 2.5775 1.7838 1 749620 + 45054 28894 29920 30659 52996 52996 -0.13586849070804874 PESKRLVL 8 Unmodified _PESKRLVL_ 0 0 0 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 REV__nc|ENSG00000132972|Q9BXT8-4|RNF17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2930908203125 2 471.292559 940.570566 0.99595 0.00046938 0.031399 1.4798E-05 1.0273 0.00048418 471.2923425069011 50.655 0.42808 45.006 44.804 45.232 -5.649 51 26 3 0 0 0 0.66338 1 31963 31963 20.454 0 1 53079000 + 45055 19896 29921 30660 52997 52997 0.09790350685523208 PESLEDGQPTL 11 Unmodified _PESLEDGQPTL_ 0 0 0 REV__ENSG00000170832|ENST00000300896|USP32 REV__ENSG00000170832|ENST00000300896|USP32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2799682617188 2 593.285325 1184.5561 NaN NaN NaN NaN NaN NaN NaN 41.793 1 41.793 41.293 42.293 0 0 0 0 0.79635 1 22578 22578 12.241 1.4167 1 + 45056 22513 29922 30661 52998 52998 -0.02879811043931113 PESLVQDKS 9 Unmodified _PESLVQDKS_ 0 0 0 REV__ENST00000567322.1_1_16:30665560-30666759:+|nuORF REV__ENST00000567322.1_1_16:30665560-30666759:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7593078613281 2 501.758746 1001.50294 0.41876 0.00021012 1.2461 0.00062523 1.6648 0.00083535 501.75928347683526 63.682 0.43148 63.682 63.543 63.974 0 27 17 2 0 0 0 0.38785 1 35513 35513 13.042 2.9685 1 1252200 + 45057 21347 29923 30662 52999 52999 0.002248559640520398 PESLYKELF 9 Unmodified _PESLYKELF_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7977294921875 2 563.294965 1124.57538 0.31328 0.00017647 1.6693 0.00094032 1.9826 0.0011168 563.7971733481243 79.754 0.27618 79.754 79.588 79.864 0 17 11 3 0 0 0 0.54444 1 44315 44315 4.756 0.81161 1 435850 45058 7527 29924 30663 53000 53000 0.018071900376071426 PESPLPEAFL 10 Unmodified _PESPLPEAFL_ 0 0 0 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 ENSG00000165349|ENST00000374299|SLC7A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1948852539062 3 367.193852 1098.55973 1.4678 0.00053898 2.2047 0.00080954 3.6725 0.0013485 367.1949961482218 22.104 0.3156 19.369 19.19 19.505 -2.7348 27 17 2 0 0 0 0.66569 1 11936 11936 3.5871 0.85186 1 1444500 45059 7329 29925 30664 53001 53001 0.01438903520556778 PESRKPIQR 9 Unmodified _PESRKPIQR_ 0 0 0 REV__ENST00000415479.1_1_2:216582932-216583852:+|nuORF REV__ENST00000415479.1_1_2:216582932-216583852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8226928710938 2 555.822547 1109.63054 NaN NaN NaN NaN NaN NaN NaN 14.161 1 14.168 13.668 14.668 0.0073986 0 0 0 0.85737 1 7010 7010 0.6015 0 1 + 45060 26756 29926 30665 53002 53002 0.08011041348754588 PESTGTLVI 9 Unmodified _PESTGTLVI_ 0 0 0 REV__ENSG00000162745|ENST00000294794|OLFML2B REV__ENSG00000162745|ENST00000294794|OLFML2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7540588378906 2 458.752933 915.491313 1.1229 0.00051515 -0.5165 -0.00023694 0.60643 0.0002782 458.752660134284 51.261 0.48624 51.261 51.014 51.5 0 74 22 4 0 0 0 0.03327 1 28413 28413 53.576 17.531 1 105490000 + 45061 21685 29927 30666 53003 53003 0.030186589407207975 PESTGTLVI 9 Unmodified _PESTGTLVI_ 0 0 0 REV__ENSG00000162745|ENST00000294794|OLFML2B REV__ENSG00000162745|ENST00000294794|OLFML2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7535705566406 2 458.752933 915.491313 0.94605 0.000434 0.45095 0.00020687 1.397 0.00064088 458.75308649337427 59.742 0.64587 53.627 53.337 53.983 -6.1147 90 35 3 0 0 0 0.03327 1 38364 38364 53.576 2.7205 1 299610000 + 45062 21685 29927 30666 53004 53004 0.030186589407207975 PESTSFLLP 9 Unmodified _PESTSFLLP_ 0 0 0 REV__ENSG00000183977|ENST00000389050|PP2D1 REV__ENSG00000183977|ENST00000389050|PP2D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 991.0791015625 1 990.514239 989.506963 0.029304 2.9026E-05 0.63941 0.00063335 0.66872 0.00066237 990.5142323704875 78.833 0.13344 78.347 78.238 78.372 -0.48595 6 4 2 0 0 0 0.55144 1 43134 43134 4.3292 0 1 474970 + 45063 23390 29928 30667 53005 53005 0.011789454577638026 PESVRAYLYR 10 Unmodified _PESVRAYLYR_ 0 0 0 nc|ENSG00000139865|Q86TZ1-2|TTC6;ENSG00000139865|ENST00000553443|TTC6 nc|ENSG00000139865|Q86TZ1-2|TTC6 nc|ENSG00000139865|Q86TZ1-2|TTC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.3372802734375 2 627.335487 1252.65642 0.22139 0.00013888 2.0338 0.0012759 2.2552 0.0014148 627.3368975220669 102.26 0.10288 102.26 102.21 102.31 0 10 4 3 0 0 0 0.44373 1 56396 56396 19.257 3.1079 1 2211800 45064 5195 29929 30668 53006 53006 0.04019890800373105 PESVRAYLYR 10 Unmodified _PESVRAYLYR_ 0 0 0 nc|ENSG00000139865|Q86TZ1-2|TTC6;ENSG00000139865|ENST00000553443|TTC6 nc|ENSG00000139865|Q86TZ1-2|TTC6 nc|ENSG00000139865|Q86TZ1-2|TTC6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.335487 1252.65642 0.15788 9.9041E-05 1.5967 0.0010017 1.7546 0.0011007 627.3363697359903 102.3 0.065071 102.18 102.13 102.19 -0.11613 -0.036707 -0.00035623 NaN 19.257 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 370590 45065 5195 29929 30668 0.04019890800373105 PESVTSVSW 9 Unmodified _PESVTSVSW_ 0 0 0 ENST00000260408.7_1_15:58936095-58936167:-|nuORF ENST00000260408.7_1_15:58936095-58936167:-|nuORF ENST00000260408.7_1_15:58936095-58936167:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2397766113281 2 496.24019 990.465826 -0.31236 -0.00015501 1.1802 0.00058567 0.86785 0.00043066 496.2409258237718 19.817 0.13309 19.817 19.741 19.874 0 15 10 2 0 0 0 0.55144 1 9935 9935 4.3292 0 1 722770 45066 11227 29930 30669 53007 53007 -0.02978815581695926 PETAPEPTP 9 Unmodified _PETAPEPTP_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4475708007812 1 938.446553 937.439277 0.60916 0.00057166 -0.89093 -0.00083609 -0.28177 -0.00026443 938.445702543457 36.545 0.30175 36.545 36.388 36.69 0 32 14 3 0 0 0 0.30562 1 19447 19447 16.942 1.0951 1 5616100 + 45067 24644 29931 30670 53008 53008 -0.03194504473037796 PETAPVAPLEL 11 Unmodified _PETAPVAPLEL_ 0 0 0 REV__ENSG00000168005|ENST00000294244|SPINDOC REV__ENSG00000168005|ENST00000294244|SPINDOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5458068847656 3 379.544773 1135.61249 1.2629 0.00047933 1.0185 0.00038657 2.2814 0.0008659 379.545157347826 40.58 0.51555 36.051 35.824 36.339 -4.5294 56 31 2 0 0 0 0.56638 1 24215 24215 7.0371 0 1 49157000 + 45068 22276 29932 30671 53009 53009 0.05010861583377846 PETAVVVLI 9 Unmodified _PETAVVVLI_ 0 0 0 REV__nc|ENSG00000181109|Q8NH57|OR52P1 REV__nc|ENSG00000181109|Q8NH57|OR52P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7906188964844 2 470.789318 939.564084 0.36257 0.00017069 1.813 0.00085355 2.1756 0.0010242 470.79010447634636 76.48 0.34283 76.48 76.294 76.637 0 23 13 2 0 0 0 0.12841 1 42529 42529 30.225 1.738 1 892930 + 45069 29825 29933 30672 53010 53010 0.09188412734147278 PETAVVVLI 9 Unmodified _PETAVVVLI_ 0 0 0 REV__nc|ENSG00000181109|Q8NH57|OR52P1 REV__nc|ENSG00000181109|Q8NH57|OR52P1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7897644042969 2 470.789318 939.564084 0.82788 0.00038976 0.11836 5.5725E-05 0.94624 0.00044548 470.7893141023015 84.026 0.44593 77.851 77.587 78.033 -6.1757 43 23 2 0 0 0 0.038285 1 55301 55301 50.855 0 1 13673000 + 45070 29825 29933 30672 53011 53011 0.09188412734147278 PETAVVVLI 9 Unmodified _PETAVVVLI_ 0 0 0 REV__nc|ENSG00000181109|Q8NH57|OR52P1 REV__nc|ENSG00000181109|Q8NH57|OR52P1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.789318 939.564084 0.36257 0.00017069 1.813 0.00085355 2.1756 0.0010242 470.79010447634636 76.48 0.34283 76.48 76.294 76.637 0 0.016691 0.00010313 NaN 30.225 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 892930 + 45071 29825 29933 30672 0.09188412734147278 PETDPQSMF 9 Unmodified _PETDPQSMF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.76416015625 2 526.223682 1050.43281 -0.1673 -8.8038E-05 -0.7396 -0.0003892 -0.90691 -0.00047724 526.2235928350669 33.182 0.31778 33.182 33.068 33.386 0 25 15 2 0 0 0 0.20528 1 17455 17455 2.0598 0 1 1293700 45072 6396 29934 30673 53012 53012 -0.09038765696072915 PETEAEREPE 10 Unmodified _PETEAEREPE_ 0 0 0 REV__ENSG00000196872|ENST00000397899|CRACDL REV__ENSG00000196872|ENST00000397899|CRACDL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7669067382812 2 593.764757 1185.51496 NaN NaN NaN NaN NaN NaN NaN 19.62 1 19.62 19.12 20.12 0 0 0 0 0.97784 1 9824 9824 2.9952 0 1 + 45073 23878 29935 30674 53013 53013 -0.07037572083413579 PETEEQADED 10 Unmodified _PETEEQADED_ 0 0 0 REV__ENSG00000188779|ENST00000380035|SKOR1 REV__ENSG00000188779|ENST00000380035|SKOR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.863037109375 3 388.150929 1161.43096 -0.92214 -0.00035793 -4.2295 -0.0016417 -5.1516 -0.0019996 388.1495337337361 32.886 0.09618 32.886 32.831 32.927 0 6 4 2 0 0 0 0.23966 1 17211 17211 3.3196 1.667 1 740940 + 45074 23728 29936 30675 53014 53014 -0.1433014797096348 PETGMPAL 8 Unmodified _PETGMPAL_ 0 0 0 ENST00000361360.3_2_2:105473593-105473881:+|nuORF ENST00000361360.3_2_2:105473593-105473881:+|nuORF ENST00000361360.3_2_2:105473593-105473881:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2017211914062 2 408.202021 814.38949 NaN NaN NaN NaN NaN NaN NaN 18.427 1 15.805 15.305 16.305 -2.6215 0 0 0 0.97348 1 9704 9704 5.7604 0 1 45075 12182 29937 30676 53015 53015 -0.02512910682708025 PETLFLASL 9 Unmodified _PETLFLASL_ 0 0 0 ENST00000472157.1_1_1:46806507-46807258:+|nuORF ENST00000472157.1_1_1:46806507-46807258:+|nuORF ENST00000472157.1_1_1:46806507-46807258:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7794189453125 2 495.778951 989.543348 0.32395 0.00016061 1.0682 0.00052959 1.3921 0.0006902 495.7794348204537 68.712 0.32865 68.712 68.509 68.838 0 17 14 2 0 0 0 0.55144 1 38291 38291 4.3292 1.44 1 388110 45076 13898 29938 30677 53016 53016 0.04815822354464672 PETLLSSSFSL 11 Unmodified _PETLLSSSFSL_ 0 0 0 ENST00000566903.5_1_16:84212549-84216700:-|nuORF ENST00000566903.5_1_16:84212549-84216700:-|nuORF ENST00000566903.5_1_16:84212549-84216700:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2083129882812 3 394.20805 1179.60232 0.79707 0.00031421 1.5857 0.00062511 2.3828 0.00093932 394.20827598973415 17.783 0.79491 15.197 15.084 15.879 -2.5866 122 72 2 0 0 0 0.6889 1 9384 9384 2.4348 0 1 2841100 45077 15428 29939 30678 53017 53017 0.01970253858144133 PETLTSKIPM 10 Unmodified _PETLTSKIPM_ 0 0 0 nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8670349121094 3 372.870492 1115.58965 1.7553 0.00065449 -0.61059 -0.00022767 1.1447 0.00042682 372.8703865191113 21.428 0.46965 18.694 18.465 18.935 -2.7348 110 39 4 0 0 0 0.66569 1 11387 11387 3.5871 0 1 38267000 45078 4543 29940 30679 53018 53018 0.03647519194259985 PETMNKWNTF 10 Unmodified _PETMNKWNTF_ 0 0 0 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.2915649414062 2 634.29243 1266.57031 -0.16825 -0.00010672 0.33386 0.00021177 0.16562 0.00010505 634.2929957626832 71.615 0.2459 71.615 71.488 71.734 0 22 10 3 0 0 0 0.6785 1 39880 39880 5.2969 0 1 653030 45079 9266 29941 30680 53019 53019 -0.0523143709665419 PETMNKWNTF 10 Unmodified _PETMNKWNTF_ 0 0 0 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.2929077148438 2 634.29243 1266.57031 0.25035 0.00015879 -0.059811 -3.7937E-05 0.19054 0.00012086 634.2924238400316 72.155 0.33511 71.679 71.499 71.834 -0.47609 45 14 4 0 0 0 0.6785 1 39550 39550 5.2969 2.0156 1 5144800 45080 9266 29941 30680 53020 53020 -0.0523143709665419 PETMNKWNTF 10 Unmodified _PETMNKWNTF_ 0 0 0 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 ENSG00000184530|ENST00000329722|C6orf58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.2908325195312 2 634.29243 1266.57031 1.0591 0.00067178 -0.59183 -0.00037539 0.46727 0.00029639 634.2918750451861 79.84 0.74171 73.664 73.117 73.858 -6.1757 95 44 3 0 0 0 0.14688 2 52433 52002;52433 40.239 19.825 1 31573000 45081 9266 29941 30680 53021;53022 53022 -0.0523143709665419 PETNAVDEPY 10 Unmodified _PETNAVDEPY_ 0 0 0 ENSG00000087116|ENST00000251582|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2788696289062 2 567.751118 1133.48768 0.58973 0.00033482 4.4495 0.0025262 5.0392 0.002861 567.7534258313788 53.453 0.2657 53.453 53.281 53.547 0 18 11 2 0 0 0 0.21952 1 29638 29638 21.747 8.2388 1 1365100 45082 1455 29942 30681 53023 53023 -0.07372055623818596 PETNQVLINI 10 Unmodified _PETNQVLINI_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.816162109375 2 570.816596 1139.61864 1.1895 0.00067901 -2.4882 -0.0014203 -1.2987 -0.00074132 570.8153518307291 21.809 0.20289 19.074 18.955 19.158 -2.7348 11 10 2 0 0 0 0.62068 1 11710 11710 10.074 2.1638 1 1109400 45083 4368 29943 30682 53024 53024 0.054413798149198556 PETSKIYWW 9 Unmodified _PETSKIYWW_ 0 0 0 ENST00000606851.5_1_6:21909779-21979286:+|nuORF ENST00000606851.5_1_6:21909779-21979286:+|nuORF ENST00000606851.5_1_6:21909779-21979286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.8694763183594 3 403.86948 1208.58661 -0.43017 -0.00017373 -0.91765 -0.00037061 -1.3478 -0.00054434 403.86927937767797 24.281 0.3096 24.281 24.138 24.448 0 60 19 4 0 0 0 0.58865 1 12480 12480 1.0715 0 1 6801500 45084 15853 29944 30683 53025 53025 -0.009339878682339986 PEVAVAEGPF 10 Unmodified _PEVAVAEGPF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF;ENST00000584052.5_1_18:21033283-21044093:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2584228515625 2 508.258382 1014.50221 -0.74056 -0.00037639 0.83645 0.00042513 0.09589 4.8737E-05 508.2587627277075 77.168 0.28761 76.685 76.58 76.868 -0.4826 15 12 2 0 0 0 0.6606 1 42267 42267 7.2892 0 1 677660 45085 1990 29945 30684 53026 53026 -0.0044593868499305245 PEVCTTQKLF 10 Unmodified _PEVCTTQKLF_ 0 0 0 nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2754516601562 2 583.299724 1164.5849 0.61296 0.00035754 -0.58141 -0.00033914 0.031541 1.8398E-05 583.3005112138748 73.18 0.32933 72.704 72.497 72.826 -0.47588 28 14 3 0 0 0 0.23325 1 39985 39985 10.074 1.4806 1 1339000 45086 4356 29946 30685 53027 53027 0.009186350514710284 PEVERDRI 8 Unmodified _PEVERDRI_ 0 0 0 nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 nc|ENSG00000119042|Q9UPW6-2|SATB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7263793945312 2 507.272355 1012.53016 -0.093279 -4.7318E-05 -0.23967 -0.00012158 -0.33295 -0.0001689 507.2722763765841 20.593 0.18595 20.593 20.485 20.671 0 25 14 2 0 0 0 8.7369 1 10318 10318 2.8892 0 1 887540 45087 3411 29947 30686 53028 53028 0.024393842950985345 PEVERRWWRRR 11 Unmodified _PEVERRWWRRR_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.968017578125 3 542.634313 1624.88111 -0.05924 -3.2146E-05 -0.26938 -0.00014618 -0.32862 -0.00017832 542.6337852272652 30.204 0.20849 30.234 30.114 30.323 0.030104 18 8 3 0 0 0 0.7453 1 15780 15780 0 0 1 1255900 45088 11437 29948 30687 53029 53029 0.09366438394044962 PEVGSEPI 8 Unmodified _PEVGSEPI_ 0 0 0 REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.20947265625 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 29.814 1 26.512 26.012 27.012 -3.3016 0 0 0 0.93066 1 16790 16790 14.582 0 1 + 45089 22420 29949 30688 53030 53030 -0.01289872156189631 PEVHLGQWYFI 11 Unmodified _PEVHLGQWYFI_ 0 0 0 ENSG00000204444|ENST00000375916|APOM ENSG00000204444|ENST00000375916|APOM ENSG00000204444|ENST00000375916|APOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.5708618164062 3 463.571434 1387.69247 0.13669 6.3365E-05 -0.61899 -0.00028695 -0.4823 -0.00022358 463.5714562049656 17.374 0.13229 17.379 17.335 17.467 0.0050564 12 7 2 0 0 0 0.69316 1 8764 8764 2.2527 0.16876 1 1605200 45090 10286 29950 30689 53031 53031 0.014133479772226565 PEVLRKDW 8 Unmodified _PEVLRKDW_ 0 0 0 ENSG00000160299|ENST00000359568|PCNT;nc|ENSG00000160299|O95613-2|PCNT ENSG00000160299|ENST00000359568|PCNT ENSG00000160299|ENST00000359568|PCNT MSMS AL20221201_MKP_PDAC_01 4 521.7893676757812 2 521.787641 1041.56073 NaN NaN NaN NaN NaN NaN NaN 4.6299 1 2.1479 1.6479 2.6479 -2.482 0 0 0 0.97444 1 2351 2351 0.69038 0 1 45091 6716 29951 30690 53032 53032 0.04161162680134112 PEVNIQAF 8 Unmodified _PEVNIQAF_ 0 0 0 ENST00000285071.8_1_17:17116566-17116938:-|nuORF ENST00000285071.8_1_17:17116566-17116938:-|nuORF ENST00000285071.8_1_17:17116566-17116938:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7849426269531 2 459.239993 916.465432 0.5158 0.00023688 0.91877 0.00042194 1.4346 0.00065881 459.24038420981896 64.158 0.2912 63.673 63.553 63.844 -0.48512 21 13 2 0 0 0 8.7369 1 35038 35038 5.7604 0 1 924330 45092 11439 29952 30691 53033 53033 0.0038580948910293955 PEVQPEEQEAV 11 Unmodified _PEVQPEEQEAV_ 0 0 0 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 ENSG00000198853|ENST00000361226|RUSC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7965698242188 2 627.796057 1253.57756 NaN NaN NaN NaN NaN NaN NaN 94.225 1 94.225 93.725 94.725 0 0 0 0 0.93669 1 52086 52086 4.897 0 1 45093 10174 29953 30692 53034 53034 -0.039084260152321804 PEVRVLHTAT 10 Unmodified _PEVRVLHTAT_ 0 0 0 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 ENSG00000153531|ENST00000612156|ADPRHL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8806457519531 3 374.880379 1121.61931 0.6937 0.00026006 -0.43987 -0.0001649 0.25384 9.5158E-05 374.8807792092832 15.079 0.11817 12.552 12.511 12.63 -2.5273 25 17 2 0 0 0 0.67459 1 7726 7726 3.0723 0 1 1385300 45094 6266 29954 30693 53035 53035 0.06336219254603748 PEVVVSLA 8 Unmodified _PEVVVSLA_ 0 0 0 ENSG00000240247|ENST00000382689|DEFA1B;ENSG00000239839|ENST00000327857|DEFA3;ENSG00000206047|ENST00000382692|DEFA1 ENSG00000240247|ENST00000382689|DEFA1B ENSG00000240247|ENST00000382689|DEFA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2350158691406 2 407.239461 812.46437 NaN NaN NaN NaN NaN NaN NaN 103.42 1 103.37 102.87 103.87 -0.047928 0 0 0 0.97444 1 57434 57434 2.3027 1.6124 1 45095 10390 29955 30694 53036 53036 0.050635951201911666 PEWEELQAPVR 11 Unmodified _PEWEELQAPVR_ 0 0 0 ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1 ENSG00000109458|ENST00000262994|GAB1 ENSG00000109458|ENST00000262994|GAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3435668945312 2 677.343509 1352.67246 0.30853 0.00020898 -0.463 -0.00031361 -0.15446 -0.00010462 677.8446435692387 51.014 0.20157 50.6 50.479 50.68 -0.41351 21 9 3 0 0 0 0.6889 1 27486 27486 5.2969 0 1 2219000 45096 2650 29956 30695 53037 53037 0.010235522465791291 PEWLVNFFG 9 Unmodified _PEWLVNFFG_ 0 0 0 nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 MSMS AL20221201_MKP_PDAC_01 4 370.1860961914062 3 370.18692 1107.53893 NaN NaN NaN NaN NaN NaN NaN 12.411 1 9.929 9.429 10.429 -2.482 0 0 0 0.86004 1 6275 6275 0.26902 0 1 45097 1026 29957 30696 53038 53038 -0.010536420684275072 PEWSEGYPFY 10 Unmodified _PEWSEGYPFY_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.7713012695312 2 637.771854 1273.52915 0.051399 3.2781E-05 0.43085 0.00027478 0.48225 0.00030756 637.7718003916867 84.387 0.40163 84.387 84.112 84.514 0 36 20 3 0 0 0 0.69064 1 46784 46784 3.9444 0.94915 1 565280 45098 5470 29958 30697 53039 53039 -0.09666874864456076 PEWVCTTFH 9 Unmodified _PEWVCTTFH_ 0 0 0 CON__P00711 CON__P00711 CON__P00711 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.24951171875 2 560.250034 1118.48552 0.30203 0.00016921 -0.076095 -4.2632E-05 0.22593 0.00012658 560.2500375673484 51.53 0.77306 51.476 51.067 51.84 -0.053871 66 38 2 0 0 0 0.41742 1 27885 27885 11.64 0 1 2438500 + 45099 152 29959 30698 53040 53040 -0.06898762842592987 PEYFHGVP 8 Unmodified _PEYFHGVP_ 0 0 0 REV__ENSG00000175899|ENST00000318602|A2M REV__ENSG00000175899|ENST00000318602|A2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2254638671875 2 473.226885 944.439217 0.15493 7.3316E-05 -2.1722 -0.0010279 -2.0173 -0.00095462 473.22573184736865 55.135 0.21919 55.066 54.919 55.138 -0.068737 16 10 2 0 0 0 0.80624 1 29977 29977 2.8892 0.31174 1 1679900 + 45100 22898 29960 30699 53041 53041 -0.035224596823809406 PEYFSNPFQTY 11 Unmodified _PEYFSNPFQTY_ 0 0 0 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 REV__nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.875732421875 3 464.875071 1391.60338 1.0205 0.00047439 0.2357 0.00010957 1.2562 0.00058396 464.87512567687963 19.64 0.2596 16.983 16.845 17.105 -2.6564 39 20 3 0 0 0 0.71618 1 10475 10475 1.1098 0 1 5513100 + 45101 17135 29961 30700 53042 53042 -0.07675531772952127 PEYFWCQFA 9 Unmodified _PEYFWCQFA_ 0 0 0 nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2561645507812 2 595.75241 1189.49027 0.64826 0.0003862 2.6033 0.0015509 3.2516 0.0019371 596.2559331831978 72.094 0.28238 71.618 71.469 71.752 -0.47609 27 11 4 0 0 0 0.54444 1 39461 39461 4.756 0.42677 1 1931500 45102 8884 29962 30701 53043 53043 -0.09689878699828114 PEYLNTTFF 9 Unmodified _PEYLNTTFF_ 0 0 0 ENST00000305364.8_1_8:27144092-27144164:-|nuORF ENST00000305364.8_1_8:27144092-27144164:-|nuORF ENST00000305364.8_1_8:27144092-27144164:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2734375 2 566.27149 1130.52843 NaN NaN NaN NaN NaN NaN NaN 90.94 1 90.445 89.945 90.945 -0.49457 0 0 0 0.82739 1 49714 49714 4.3292 1.7518 1 45103 11615 29963 30702 53044 53044 -0.0316166951354262 PEYLTPQG 8 Unmodified _PEYLTPQG_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;nc|ENSG00000141736|P04626-3|ERBB2;nc|ENSG00000141736|P04626-2|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7241821289062 2 452.724175 903.433798 0.34334 0.00015544 1.0073 0.00045604 1.3507 0.00061148 452.7242030270731 90.857 0.08493 90.363 90.299 90.384 -0.49457 9 8 2 0 0 0 0.44637 1 49664 49664 39.95 5.548 1 918170 45104 5369 29964 30703 53045 53045 -0.021781832648457566 PEYNYDWW 8 Unmodified _PEYNYDWW_ 0 0 0 ENSG00000089199|ENST00000378961|CHGB ENSG00000089199|ENST00000378961|CHGB ENSG00000089199|ENST00000378961|CHGB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.494140625 3 391.494301 1171.46108 NaN NaN NaN NaN NaN NaN NaN 52.645 1 52.645 52.145 53.145 0 0 0 0 0.97444 1 29142 29142 3.9444 2.2021 1 45105 1521 29965 30704 53046 53046 -0.11779699724479542 PEYQKEHHLI 10 Unmodified _PEYQKEHHLI_ 0 0 0 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 REV__nc|ENSG00000127481|Q5T4S7-3|UBR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.8922729492188 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 78.311 1 78.311 77.811 78.811 0 0 0 0 1.0019 1 43521 43521 0.15932 0 1 + 45106 19583 29966 30705 53047 53047 0.01671586937777647 PEYQKRRLLQ 10 Unmodified _PEYQKRRLLQ_ 0 0 0 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 ENSG00000149596|ENST00000372980|JPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2590942382812 3 444.257849 1329.75172 1.3877 0.00061649 2.2151 0.00098408 3.6028 0.0016006 444.25877871517605 96.827 0.1506 90.652 90.557 90.708 -6.1757 11 8 2 0 0 0 0.69385 1 64174 64174 3.5871 0.74377 1 7959600 45107 6024 29967 30706 53048 53048 0.10003243991423005 PFADEEEEEEM 11 Unmodified _PFADEEEEEEM_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.7547607421875 2 677.753198 1353.49184 0.032084 2.1745E-05 1.8586 0.0012597 1.8907 0.0012814 677.7543925006428 49.073 0.20838 49.073 48.986 49.194 0 14 9 2 0 0 0 0.63851 1 26993 26993 9.3831 4.0862 1 2352700 45108 4537 29968 30707 53049 53049 -0.17076378983074392 PFAEAEAFL 9 Unmodified _PFAEAEAFL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 995.4924926757812 1 994.488024 993.480748 0.27778 0.00027625 0.29346 0.00029184 0.57124 0.00056809 994.4881022142919 74.022 0.3303 74.022 73.879 74.21 0 34 15 3 0 0 0 0.30562 1 41166 41166 16.942 5.302 1 1705600 45109 3263 29969 30708 53050 53050 -0.016253237137220822 PFAEAEAFL 9 Unmodified _PFAEAEAFL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1;ENST00000487114.1_1_1:36644989-36645856:+|nuORF;nc|ENSG00000116871|Q3KQU3-3|MAP7D1;ENST00000373148.5_1_1:36643158-36645856:+|nuORF nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.4851684570312 1 994.488024 993.480748 0.61381 0.00061043 0.0010037 9.9821E-07 0.61481 0.00061142 994.487669611897 74.514 0.27437 74.038 73.933 74.207 -0.47588 18 11 2 0 0 0 0.14602 1 40768 40768 28.487 0 1 625390 45110 3263 29969 30708 53051 53051 -0.016253237137220822 PFAFFLGSF 9 Unmodified _PFAFFLGSF_ 0 0 0 REV__nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19 REV__nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.2811889648438 2 516.763104 1031.51165 0.68161 0.00035223 -3.3619 -0.0017373 -2.6803 -0.0013851 516.7616577838766 43.128 0.26772 38.363 38.18 38.448 -4.7648 30 17 2 0 0 0 0.16785 1 26027 26027 16.942 9.0321 1 35258000 + 45111 21841 29970 30709 53052 53052 -0.0028412560880042292 PFAFGDSCL 9 Unmodified _PFAFGDSCL_ 0 0 0 REV__nc|ENSG00000135976|A6QL64-4|ANKRD36 REV__nc|ENSG00000135976|A6QL64-4|ANKRD36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7127685546875 2 478.712753 955.410954 1.0333 0.00049464 -0.59843 -0.00028647 0.43485 0.00020817 478.71269627933646 99.478 0.24187 93.302 93.174 93.416 -6.1757 30 15 3 0 0 0 0.2001 1 66225 66225 23.148 3.7094 1 34545000 + 45112 20125 29971 30710 53053 53053 -0.06853525653968973 PFAKFNVTH 9 Unmodified _PFAKFNVTH_ 0 0 0 REV__ENSG00000178538|ENST00000317995|CA8 REV__ENSG00000178538|ENST00000317995|CA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.191162109375 3 354.190665 1059.55016 -0.30414 -0.00010772 -2.2518 -0.00079756 -2.5559 -0.00090529 354.1895432772286 36.226 0.50605 36.251 36.012 36.518 0.024967 32 22 2 0 0 0 0.57331 1 19257 19257 1.7423 0.41263 1 2271100 + 45113 23048 29972 30711 53054 53054 0.022771800257032737 PFAKLFIF 8 Unmodified _PFAKLFIF_ 0 0 0 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7921447753906 2 491.791664 981.568775 1.1897 0.00058508 0.26264 0.00012917 1.4523 0.00071425 491.7915569824694 95.442 0.40193 89.266 88.949 89.351 -6.1757 38 22 2 0 0 0 0.80624 1 63076 63076 2.8892 0 1 12684000 45114 16620 29973 30712 53055 53055 0.07725341667560315 PFAKPLPTF 9 Unmodified _PFAKPLPTF_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2921142578125 2 509.292028 1016.5695 0.52574 0.00026775 0.012262 6.245E-06 0.538 0.000274 509.2914893512314 59.446 0.40072 59.393 59.174 59.574 -0.053059 42 20 3 0 0 0 0.0086209 2 32446 32338;32446 89.401 66.252 1 12593000 45115 9153 29974 30713 53056;53057 53057 0.06188136316609416 PFALKDTVL 9 Unmodified _PFALKDTVL_ 0 0 0 ENST00000518942.1_1_8:52811934-52812075:+|nuORF ENST00000518942.1_1_8:52811934-52812075:+|nuORF ENST00000518942.1_1_8:52811934-52812075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2980651855469 2 502.294768 1002.57498 0.91794 0.00046108 0.59895 0.00030085 1.5169 0.00076193 502.29499605510694 90.23 0.85937 84.055 83.615 84.474 -6.1757 159 49 4 0 0 0 0.37804 1 59794 59794 13.508 0.97634 1 64810000 45116 14698 29975 30714 53058 53058 0.07379815108413368 PFALLPLY 8 Unmodified _PFALLPLY_ 0 0 0 REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.27880859375 2 467.275847 932.537141 -0.27417 -0.00012811 2.269 0.0010602 1.9948 0.00093213 467.276613884903 36.498 0.37552 36.519 36.372 36.747 0.021545 32 17 3 0 0 0 0.76859 1 19443 19443 11.114 0 1 5058800 + 45117 21344 29976 30715 53059 53059 0.06817348913602927 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7951049804688 2 496.26601 990.517468 0.64752 0.00032134 -0.38969 -0.00019339 0.25783 0.00012795 496.2654081696863 72.305 0.43144 71.829 71.549 71.98 -0.47609 24 19 2 0 0 0 0.17666 1 39540 39540 19.439 4.8573 1 1543100 45118 9027 29977 30716 53060 53060 0.021829729028468137 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 991.5272216796875 1 991.524744 990.517468 0.91959 0.0009118 -0.25913 -0.00025693 0.66047 0.00065487 991.5246999998456 71.807 0.20789 71.846 71.706 71.914 0.039032 16 9 2 0 0 0 0.0088975 1 39495 39495 104.8 47.328 1 1854900 45119 9027 29977 30716 53061 53061 0.021829729028468137 PFAPAIQTF 9 Unmodified _PFAPAIQTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2665710449219 2 496.26601 990.517468 0.74552 0.00036998 0.20849 0.00010347 0.95402 0.00047345 496.2659662763152 71.775 0.3942 71.814 71.62 72.014 0.039024 46 18 3 0 0 0 0.040472 1 39510 39510 49.669 24.995 1 11983000 45120 9027 29977 30716 53062 53062 0.021829729028468137 PFAPAVLS 8 Unmodified _PFAPAVLS_ 0 0 0 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 802.4515380859375 1 801.450517 800.44324 0.43035 0.0003449 0.14374 0.0001152 0.57408 0.0004601 801.4505062643624 79.477 0.22755 79.532 79.445 79.672 0.054977 14 8 2 0 0 0 0.76859 1 43911 43911 11.114 0 1 1735300 + 45121 21480 29978 30717 53063 53063 0.03503629811314113 PFAQSSNCY 9 Unmodified _PFAQSSNCY_ 0 0 0 nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3 nc|ENSG00000187605|O43151-2|TET3 nc|ENSG00000187605|O43151-2|TET3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2588806152344 2 508.710742 1015.40693 1.0929 0.00055599 -0.40737 -0.00020723 0.68557 0.00034875 508.7103923529163 37.359 0.36552 33.075 32.891 33.256 -4.2835 33 21 2 0 0 0 0.21242 1 21859 21859 5.2307 0.90143 1 5247000 45122 9569 29979 30718 53064 53064 -0.10015615147699464 PFASDCFF 8 Unmodified _PFASDCFF_ 0 0 0 ENSG00000085832|ENST00000371733|EPS15;nc|ENSG00000085832|P42566-2|EPS15 ENSG00000085832|ENST00000371733|EPS15 ENSG00000085832|ENST00000371733|EPS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.1928405761719 2 467.194196 932.37384 0.41616 0.00019443 -1.7526 -0.00081879 -1.3364 -0.00062436 467.1932362921838 53.704 0.35611 53.253 53.065 53.421 -0.45173 25 17 2 0 0 0 0.80044 1 29118 29118 6.3541 0 1 2644200 45123 1420 29980 30719 53065 53065 -0.09505197199746362 PFATREPSL 9 Unmodified _PFATREPSL_ 0 0 0 REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6 REV__nc|ENSG00000188803|Q6ZSJ9|SHISA6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.2922973632812 2 509.271824 1016.5291 0.58529 0.00029807 -2.8403 -0.0014465 -2.255 -0.0011484 509.270526008711 65.126 0.32089 58.951 58.715 59.036 -6.1757 27 17 2 0 0 0 0.17666 1 42175 42175 13.508 0.97634 1 5046300 + 45124 23731 29981 30720 53066 53066 0.02149169926178729 PFAVTTQSF 9 Unmodified _PFAVTTQSF_ 0 0 0 ENSG00000167615|ENST00000326764|LENG8;nc|ENSG00000167615|Q96PV6-1|LENG8 ENSG00000167615|ENST00000326764|LENG8 ENSG00000167615|ENST00000326764|LENG8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2523193359375 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 59.743 1 59.69 59.19 60.19 -0.053062 0 0 0 0.052454 1 32572 32572 56.541 24.424 1 45125 7639 29982 30721 53067 53067 -0.006739213394325816 PFAYVQCL 8 Unmodified _PFAYVQCL_ 0 0 0 REV__ENSG00000182631|ENST00000330120|RXFP3 REV__ENSG00000182631|ENST00000330120|RXFP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.229248046875 2 470.733489 939.452425 0.6495 0.00030574 -4.3356 -0.0020409 -3.6861 -0.0017352 470.73021134792737 47.023 0.32364 41.942 41.855 42.179 -5.0805 49 27 2 0 0 0 8.7369 1 29196 29196 6.3541 0 1 21373000 + 45126 23286 29983 30722 53068 53068 -0.01972344894647904 PFCEKLLSW 9 Carbamidomethyl (C) _PFC(Carbamidomethyl (C))EKLLSW_ PFC(1)EKLLSW PFC(51)EKLLSW 0 1 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2976684570312 2 590.296985 1178.57942 1.1899 0.00070237 0.52278 0.0003086 1.7126 0.001011 590.2970688650822 88.111 0.61942 81.936 81.57 82.189 -6.1757 73 34 3 0 0 0 0.037253 1 58228 58228 51.415 13.24 1 35684000 45127 4089 29984 30723 53069 53069 411 -0.0027304374032155465 PFCFFWHPY 9 Unmodified _PFCFFWHPY_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|344|2|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|344|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.2725830078125 2 622.273312 1242.53207 NaN NaN NaN NaN NaN NaN NaN 14.294 1 14.301 13.801 14.801 0.0073986 0 0 0 0.85737 1 7080 7080 0.6015 0.076735 1 + 45128 29377 29985 30724 53070 53070 -0.07949278220644374 PFCIGESALW 10 Unmodified _PFCIGESALW_ 0 0 0 REV__ENSG00000144229|ENST00000409968|THSD7B REV__ENSG00000144229|ENST00000409968|THSD7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3104858398438 2 561.76806 1121.52157 1.5509 0.00087127 0.31421 0.00017651 1.8651 0.0010478 561.7682145273596 82.584 0.42014 82.646 82.474 82.894 0.062004 37 15 3 0 0 0 0.22507 1 45682 45682 11.64 0 1 5496800 + 45129 20695 29986 30725 53071 53071 -0.03433305665748776 PFCLGGDKRAY 11 Unmodified _PFCLGGDKRAY_ 0 0 0 REV__ENSG00000164161|ENST00000296575|HHIP REV__ENSG00000164161|ENST00000296575|HHIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5381774902344 3 409.537736 1225.59138 -0.3518 -0.00014407 0.79017 0.0003236 0.43837 0.00017953 409.538236473487 30.721 0.3406 30.751 30.585 30.925 0.030106 37 14 3 0 0 0 0.73115 1 16156 16156 0.45452 0 1 1573000 + 45130 21879 29987 30726 53072 53072 -0.012394269971082394 PFCPESPRF 9 Carbamidomethyl (C) _PFC(Carbamidomethyl (C))PESPRF_ PFC(1)PESPRF PFC(92)PESPRF 0 1 0 ENSG00000117394|ENST00000426263|SLC2A1;ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000059804|ENST00000075120|SLC2A3 ENSG00000117394|ENST00000426263|SLC2A1;ENSG00000059804|ENST00000075120|SLC2A3 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7636108398438 2 568.763309 1135.51206 0.838 0.00047662 -0.19647 -0.00011174 0.64153 0.00036488 568.7632362021878 52.311 0.44281 46.576 46.393 46.836 -5.7345 58 25 3 0 0 0 0.0082661 2 32967 32967;33091 92.491 56.447 1 102100000 45131 3297;821 29988 30727 53073;53074 53073 71 -0.05027073951282546 PFCRLAAPHY 10 Unmodified _PFCRLAAPHY_ 0 0 0 REV__ENST00000464424.1_1_5:122435593-122506607:+|nuORF REV__ENST00000464424.1_1_5:122435593-122506607:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.1972045898438 3 392.199054 1173.57533 0.94452 0.00037044 -1.2303 -0.00048251 -0.28576 -0.00011207 392.1967598077692 18.304 0.51117 15.683 15.49 16.001 -2.6215 147 49 5 0 0 0 0.42068 3 9672 9574;9672;9779 12.873 2.7987 1 15643000 + 45132 27375 29989 30728 53075;53076;53077 53076 -0.004510884433557294 PFCVLWPRP 9 Unmodified _PFCVLWPRP_ 0 0 0 REV__ENST00000560073.5_1_14:23768671-23770424:-|nuORF REV__ENST00000560073.5_1_14:23768671-23770424:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8664855957031 3 372.200395 1113.57936 0.018399 6.8482E-06 1.1478 0.00042721 1.1662 0.00043406 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.54444 1 19441 19441 2.7352 0 1 285750000 + 45133 27216 29990 30729 53078 53078 0.02711001050329287 PFDCGCDE 8 Unmodified _PFDCGCDE_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MSMS AL20221201_MKP_PDAC_01 4 443.1412048339844 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 5.8732 1 3.3912 2.8912 3.8912 -2.482 0 0 0 0.97444 1 2975 2975 0 0 1 45134 2457 29991 30730 53079 53079 -0.17870901107528425 PFDCGCDE 8 Unmodified _PFDCGCDE_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MSMS AL20221201_MKP_PDAC_01 4 443.1405029296875 2 443.141304 884.268054 NaN NaN NaN NaN NaN NaN NaN 7.1216 1 4.6397 4.1397 5.1397 -2.482 0 0 0 0.97444 1 3597 3597 0 0 1 45135 2457 29991 30730 53080 53080 -0.17870901107528425 PFDEPTAT 8 Unmodified _PFDEPTAT_ 0 0 0 REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.3931884765625 1 877.39379 876.386513 0.42141 0.00036974 0.72926 0.00063985 1.1507 0.0010096 877.3942562423406 60.778 0.32603 60.778 60.581 60.907 0 22 13 2 0 0 0 0.80722 1 33949 33949 2.3027 0 1 1919800 + 45136 18525 29992 30731 53081 53081 -0.056624625358494995 PFDGEILVF 9 Unmodified _PFDGEILVF_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.771728515625 2 518.771126 1035.5277 1.3618 0.00070648 1.0396 0.00053934 2.4015 0.0012458 518.7717833275824 100.04 0.14673 93.865 93.792 93.938 -6.1757 25 9 4 0 0 0 0.30562 1 66854 66854 16.942 1.0951 1 22629000 + 45137 17684 29993 30732 53082 53082 0.01135535837443058 PFDGKDGLLAH 11 Unmodified _PFDGKDGLLAH_ 0 0 0 nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2;ENSG00000100985|ENST00000372330|MMP9 nc|ENSG00000087245|P08253-2|MMP2 nc|ENSG00000087245|P08253-2|MMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5371398925781 3 390.536501 1168.58767 0.00075774 2.9593E-07 2.887 0.0011275 2.8877 0.0011278 390.53649041745155 32.047 0.24908 31.918 31.793 32.042 -0.12915 14 9 2 0 0 0 0.48615 1 16674 16674 9.7643 0 1 1564300 45138 1460 29994 30733 53083 53083 0.010122265006657472 PFDKETGF 8 Unmodified _PFDKETGF_ 0 0 0 nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP nc|ENSG00000119705|Q9GZT3-2|SLIRP nc|ENSG00000119705|Q9GZT3-2|SLIRP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7245788574219 2 470.724175 939.433798 NaN NaN NaN NaN NaN NaN NaN 77.051 1 77.051 76.551 77.551 0 0 0 0 0.97348 1 42836 42836 5.7604 0 1 45139 3460 29995 30734 53084 53084 -0.03834183264859803 PFDKSLIDAY 10 Unmodified _PFDKSLIDAY_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7978515625 2 584.797872 1167.58119 0.30791 0.00018007 -0.62518 -0.00036561 -0.31727 -0.00018554 584.797461685804 92.9 0.42677 92.442 92.233 92.66 -0.4574 62 22 3 0 0 0 0.40136 1 50813 50813 21.537 11.463 1 10380000 + 45140 24045 29996 30735 53085 53085 0.0041028854927844804 PFDKSLIDAY 10 Unmodified _PFDKSLIDAY_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 584.797872 1167.58119 0.1144 6.6902E-05 -0.12495 -7.3073E-05 -0.010553 -6.1711E-06 584.797767314075 92.378 0.11137 92.378 92.335 92.447 0 -0.032326 0.00045357 NaN 21.537 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 468670 + 45141 24045 29996 30735 0.0041028854927844804 PFDLIMVLSR 10 Unmodified _PFDLIMVLSR_ 0 0 0 ENST00000446626.2_1_9:46844845-46845151:+|nuORF ENST00000446626.2_1_9:46844845-46845151:+|nuORF ENST00000446626.2_1_9:46844845-46845151:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2985229492188 2 595.833734 1189.65292 1.292 0.0007698 -4.4504 -0.0026517 -3.1584 -0.0018819 595.8307910175283 82.282 0.37492 82.344 82.125 82.5 0.062004 24 14 2 0 0 0 0.23227 1 45515 45515 10.824 1.4408 1 3150600 45142 13467 29997 30736 53086 53086 0.06567504702138649 PFDLQTLI 8 Unmodified _PFDLQTLI_ 0 0 0 ENST00000489964.5_1_2:136664888-136672125:-|nuORF ENST00000489964.5_1_2:136664888-136672125:-|nuORF ENST00000489964.5_1_2:136664888-136672125:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7654113769531 2 473.765843 945.517133 0.6035 0.00028592 -1.2786 -0.00060576 -0.67511 -0.00031984 473.76512786212515 85.486 0.368 84.985 84.7 85.068 -0.5015 42 35 2 0 0 0 0.74163 1 46707 46707 13.508 0.97634 1 2227700 45143 14250 29998 30737 53087 53087 0.04219553183008884 PFDPPKDIKF 10 Unmodified _PFDPPKDIKF_ 0 0 0 REV__ENSG00000102781|ENST00000380615|KATNAL1 REV__ENSG00000102781|ENST00000380615|KATNAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.7886962890625 2 602.324057 1202.63356 0.16538 9.9613E-05 0.96125 0.00057899 1.1266 0.0006786 602.8246194112332 74.174 0.2467 74.218 74.096 74.342 0.043983 15 10 2 0 0 0 0.23566 1 40945 40945 7.2892 1.0834 1 1279900 + 45144 18255 29999 30738 53088 53088 0.04034871682870289 PFDRAHSFT 9 Unmodified _PFDRAHSFT_ 0 0 0 REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF REV__ENST00000412872.3_1_6:68598425-68598952:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8418884277344 3 359.841924 1076.50394 0.83898 0.0003019 1.3454 0.00048414 2.1844 0.00078604 359.84201111662264 15.308 0.13845 12.781 12.728 12.866 -2.5273 42 26 2 0 0 0 0.55144 1 7862 7862 2.4985 0.21571 1 1722200 + 45145 26727 30000 30739 53089 53089 -0.031248848763880233 PFDRRMHV 8 Unmodified _PFDRRMHV_ 0 0 0 REV__ENST00000431259.6_1_2:179393504-179396103:+|nuORF REV__ENST00000431259.6_1_2:179393504-179396103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2761840820312 2 529.271635 1056.52872 0.3496 0.00018503 -3.8275 -0.0020258 -3.4779 -0.0018408 529.2715453079039 37.32 0.66598 37.32 37.18 37.846 0 53 34 3 0 0 0 0.74163 1 20054 20054 13.508 0.46542 1 21290000 + 45146 26975 30001 30740 53090 53090 0.002714717253411436 PFDYACITDM 10 Unmodified _PFDYACITDM_ 0 0 0 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2400512695312 2 588.241018 1174.46748 0.9868 0.00058047 1.4632 0.00086069 2.45 0.0014412 588.2416961897026 32.311 0.38627 28.455 28.284 28.67 -3.8562 36 22 2 0 0 0 0.33553 1 18373 18373 25.399 4.9457 1 18292000 45147 6256 30002 30741 53091 53091 -0.11277265879652987 PFEDTPVV 8 Unmodified _PFEDTPVV_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP;ENST00000454020.1_3_2:234756047-234763110:-|nuORF nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.227294921875 2 452.226551 902.438549 NaN NaN NaN NaN NaN NaN NaN 62.049 1 62.049 61.549 62.549 0 0 0 0 0.44807 1 34600 34600 46.921 0 1 45148 3713 30003 30742 53092 53092 -0.01657299122086897 PFEDTPVV 8 Unmodified _PFEDTPVV_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP;ENST00000454020.1_3_2:234756047-234763110:-|nuORF nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2266235351562 2 452.226551 902.438549 NaN NaN NaN NaN NaN NaN NaN 62.259 1 62.259 61.759 62.759 0 0 0 0 0.44807 1 34721 34721 46.921 0 1 45149 3713 30003 30742 53093 53093 -0.01657299122086897 PFELKIEEL 9 Unmodified _PFELKIEEL_ 0 0 0 REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15 REV__nc|ENSG00000100583|Q9P1V8-2|SAMD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3126831054688 2 559.310615 1116.60668 0.81497 0.00045582 2.817 0.0015756 3.632 0.0020314 559.3126517666475 80.638 0.22971 80.695 80.607 80.837 0.057587 13 8 2 0 0 0 0.2324 1 44622 44622 20.415 4.2654 1 2959800 + 45150 18082 30004 30743 53094 53094 0.05303763071697176 PFERRTLSP 9 Unmodified _PFERRTLSP_ 0 0 0 REV__nc|ENSG00000130338|Q9NRJ4-2|TULP4 REV__nc|ENSG00000130338|Q9NRJ4-2|TULP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2062072753906 3 368.204974 1101.59309 1.4229 0.00052391 0.055161 2.031E-05 1.478 0.00054422 368.20518673670654 18.806 0.3438 16.184 15.99 16.334 -2.6215 52 25 3 0 0 0 0.50598 1 9934 9934 4.7159 1.1289 1 5341900 + 45151 19715 30005 30744 53095 53095 0.04635950083138596 PFESRRLWKN 10 Unmodified _PFESRRLWKN_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8619384765625 2 666.862203 1331.70985 -0.18036 -0.00012027 -0.35479 -0.00023659 -0.53514 -0.00035687 666.8624735360703 76.834 0.41077 76.354 76.195 76.606 -0.47945 45 18 4 0 0 0 0.48505 1 42025 42025 17.113 3.2068 1 1615200 45152 5659 30006 30745 53096 53096 0.057266883028887605 PFESRRLWKN 10 Unmodified _PFESRRLWKN_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.8618774414062 2 666.862203 1331.70985 0.69688 0.00046473 -0.98335 -0.00065576 -0.28647 -0.00019103 666.8616080064168 89.976 0.56509 83.801 83.526 84.091 -6.1757 51 31 2 0 0 0 0.067957 2 59304 59304;59438 53.833 23.196 1 16145000 45153 5659 30006 30745 53097;53098 53097 0.057266883028887605 PFETSSYF 8 Unmodified _PFETSSYF_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2161865234375 2 489.216183 976.417813 NaN NaN NaN NaN NaN NaN NaN 61.777 1 61.777 61.277 62.277 0 0 0 0 0.93066 1 34443 34443 14.582 0 1 45154 9845 30007 30746 53099 53099 -0.0713388950175613 PFFADLVRTY 10 Unmodified _PFFADLVRTY_ 0 0 0 REV__ENST00000368886.9_1_10:124752542-124752656:-|nuORF REV__ENST00000368886.9_1_10:124752542-124752656:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5515747070312 3 410.21688 1227.62881 0.38655 0.00015857 0.54597 0.00022397 0.93252 0.00038253 410.21707593846037 46.122 0.3028 46.094 45.926 46.229 -0.028011 35 13 3 0 0 0 0.57893 2 24766 24766;24871 7.4771 0.44103 1 17923000 + 45155 26025 30008 30747 53100;53101 53100 0.024099875401361714 PFFAEAYF 8 Unmodified _PFFAEAYF_ 0 0 0 REV__ENSG00000142623|ENST00000375471|PADI1 REV__ENSG00000142623|ENST00000375471|PADI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.228759765625 2 496.231636 990.448719 0.14106 6.9997E-05 -2.6772 -0.0013285 -2.5362 -0.0012585 496.23010146721276 62.166 0.24706 62.166 62.099 62.346 0 19 13 2 0 0 0 0.72953 1 34685 34685 14.582 4.3983 1 1505000 + 45156 20583 30009 30748 53102 53102 -0.046886913968592125 PFFAQPSVL 9 Unmodified _PFFAQPSVL_ 0 0 0 REV__ENST00000599788.1_2_19:50414393-50432585:-|nuORF REV__ENST00000599788.1_2_19:50414393-50432585:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7730102539062 2 503.273835 1004.53312 1.0904 0.00054875 -3.1011 -0.0015607 -2.0108 -0.001012 503.2739198168242 88.675 0.80377 82.5 82.079 82.882 -6.1757 114 44 4 0 0 0 0.28047 1 58308 58308 18.135 1.1927 1 40658000 + 45157 29220 30010 30749 53103 53103 0.031032594199018604 PFFAWFEYIL 10 Unmodified _PFFAWFEYIL_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MSMS AL20221201_MKP_PDAC_01 4 666.8407592773438 2 666.8368 1331.65905 NaN NaN NaN NaN NaN NaN NaN 98.458 1 92.282 91.782 92.782 -6.1757 0 0 0 0.5638 1 65309 65309 23.148 3.8914 1 45158 6622 30011 30750 53104 53104 0.006483462053438416 PFFCMIEYAI 10 Unmodified _PFFCMIEYAI_ 0 0 0 REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF REV__ENST00000504768.2_1_5:93246475-93410459:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.8768920898438 3 411.860939 1232.56099 1.3777 0.00056742 0.066911 2.7558E-05 1.4446 0.00059498 411.86085345886266 54.359 0.35993 48.494 48.247 48.607 -5.8653 45 21 3 0 0 0 0.23862 1 34510 34510 1.9064 0 1 23019000 + 45159 28060 30012 30751 53105 53105 -0.04598921706519832 PFFDPQIP 8 Unmodified _PFFDPQIP_ 0 0 0 ENSG00000135222|ENST00000353151|CSN2 ENSG00000135222|ENST00000353151|CSN2 ENSG00000135222|ENST00000353151|CSN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.4923095703125 1 960.482545 959.475269 0.30019 0.00028833 0.37341 0.00035865 0.6736 0.00064698 960.4827409499295 79.032 1.2674 78.546 77.971 79.239 -0.48595 147 53 4 0 0 0 0.80143 1 43227 43227 5.7604 0.52976 1 9418500 45160 4679 30013 30752 53106 53106 -0.00609002505530043 PFFFHEHF 8 Unmodified _PFFFHEHF_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2562866210938 2 554.255977 1106.4974 NaN NaN NaN NaN NaN NaN NaN 85.495 1 85.495 84.995 85.995 0 0 0 0 0.97444 1 47378 47378 0.79363 0 1 + 45161 20378 30014 30753 53107 53107 -0.05158778037093725 PFFFMYMV 8 Unmodified _PFFFMYMV_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2474975585938 2 541.247917 1080.48128 0.3366 0.00018219 0.09798 5.3032E-05 0.43458 0.00023522 541.2460007321351 71.584 0.40753 71.108 70.886 71.293 -0.47609 37 16 3 0 0 0 0.76859 1 39149 39149 11.114 0.29054 1 986070 45162 9285 30015 30754 53108 53108 -0.055739435898658485 PFFFPTQGHDY 11 Unmodified _PFFFPTQGHDY_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8362426757812 2 678.306395 1354.59824 0.23485 0.0001593 2.8381 0.0019251 3.0729 0.0020844 678.3080858525572 49.212 0.1646 49.212 49.152 49.316 0 14 7 3 0 0 0 0.29414 1 27100 27100 10.074 1.9184 1 1716400 45163 2874 30016 30755 53109 53109 -0.06487790844880692 PFFFPTQGHDY 11 Unmodified _PFFFPTQGHDY_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8355102539062 2 678.306395 1354.59824 0.79679 0.00054047 1.9065 0.0012932 2.7033 0.0018337 678.8094869208655 50.022 0.32179 49.63 49.431 49.753 -0.3923 27 15 3 0 0 0 0.29414 1 26837 26837 10.074 2.465 1 2629300 45164 2874 30016 30755 53110 53110 -0.06487790844880692 PFFGFQFFY 9 Unmodified _PFFGFQFFY_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2817993164062 2 600.28166 1198.54877 NaN NaN NaN NaN NaN NaN NaN 100.68 1 100.55 100.05 101.05 -0.13293 0 0 0 0.85737 1 54954 54954 0.6015 0 1 + 45165 21250 30017 30756 53111 53111 -0.04256454063033743 PFFGRPPL 8 Unmodified _PFFGRPPL_ 0 0 0 REV__ENST00000335325.8_1_16:75033363-75033510:+|nuORF REV__ENST00000335325.8_1_16:75033363-75033510:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7610473632812 2 465.763438 929.512323 NaN NaN NaN NaN NaN NaN NaN 94.989 1 94.621 94.121 95.121 -0.36814 0 0 0 0.9706 1 51888 51888 6.3541 0 1 + 45166 25634 30018 30757 53112 53112 0.044747138308935064 PFFIFCFSTL 10 Unmodified _PFFIFCFSTL_ 0 0 0 REV__ENST00000357727.6_1_7:28859547-28859715:+|nuORF REV__ENST00000357727.6_1_7:28859547-28859715:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8724975585938 3 407.871944 1220.594 NaN NaN NaN NaN NaN NaN NaN 32.853 1 32.694 32.194 33.194 -0.15918 0 0 0 0.96627 1 17121 17121 2.086 0 1 + 45167 25858 30019 30758 53113 53113 -0.007469715921615716 PFFIIYCR 8 Unmodified _PFFIIYCR_ 0 0 0 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.776123046875 2 529.778231 1057.54191 0.37753 0.00020001 -2.3992 -0.001271 -2.0217 -0.001071 530.2790019797859 85.793 0.23268 85.793 85.701 85.934 0 17 9 2 0 0 0 0.80311 1 47550 47550 4.756 0.42677 1 312600 45168 4637 30020 30759 53114 53114 0.015439097847092853 PFFKILSRLA 10 Unmodified _PFFKILSRLA_ 0 0 0 REV__ENSG00000110756|ENST00000349215|HPS5 REV__ENSG00000110756|ENST00000349215|HPS5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7052612304688 2 596.366059 1190.71756 2.7428 0.0016357 0.68329 0.00040749 3.4261 0.0020432 596.3666726214843 97.16 0.94931 97.153 96.853 97.802 -0.007019 74 35 3 0 0 0 0.23821 1 54255 54255 4.3292 2.485 1 12764000 + 45169 18720 30021 30760 53115 53115 0.12983447570468343 PFFLGGGLQEL 11 Unmodified _PFFLGGGLQEL_ 0 0 0 ENST00000443258.7_1_2:96688488-96688790:+|nuORF;ENST00000467292.6_1_2:96688598-96688790:+|nuORF;ENST00000233379.8_1_2:96079888-96080107:+|nuORF ENST00000443258.7_1_2:96688488-96688790:+|nuORF ENST00000443258.7_1_2:96688488-96688790:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 589.3156127929688 2 589.316232 1176.61791 NaN NaN NaN NaN NaN NaN NaN 54.815 1 48.95 48.45 49.45 -5.8653 0 0 0 0.48869 1 34819 34819 24.991 2.2547 1 45170 11078 30022 30761 53116 53116 0.03666585165842662 PFFLHPPLF 9 Unmodified _PFFLHPPLF_ 0 0 0 REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF REV__ENST00000532529.1_1_11:101827229-101827448:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.3072509765625 2 557.807845 1113.60114 1.3224 0.00073767 -0.24225 -0.00013513 1.0802 0.00060254 557.8075817274001 100.27 0.14131 94.09 94.03 94.171 -6.1757 18 8 3 0 0 0 0.17158 1 67000 67000 20.871 6.9652 1 24085000 + 45171 28466 30023 30762 53117 53117 0.04888129070559444 PFFLLCRCL 9 Unmodified _PFFLLCRCL_ 0 0 0 ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF ENST00000481948.1_1_16:88104968-88110264:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2935180664062 2 556.293191 1110.57183 NaN NaN NaN NaN NaN NaN NaN 34.921 1 34.949 34.449 35.449 0.027401 0 0 0 0.7243 1 18434 18434 8.5933 0.68312 1 45172 14092 30024 30763 53118 53118 0.020965254584098147 PFFNPIQTQVF 11 Unmodified _PFFNPIQTQVF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.3502807617188 2 669.348063 1336.68157 2.1839 0.0014618 1.8377 0.0012301 4.0216 0.0026918 669.8509848243185 93.915 0.32142 93.938 93.77 94.091 0.022987 37 12 4 0 0 0 0.0029835 2 52173 52173;52269 78.728 47.46 1 5611600 45173 5575 30025 30764 53119;53120 53119 0.02669945602929147 PFFNPIQTQVF 11 Unmodified _PFFNPIQTQVF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3489990234375 2 669.348063 1336.68157 0.026274 1.7587E-05 -0.64274 -0.00043022 -0.61646 -0.00041263 669.3477315752987 99.841 0.18283 93.665 93.558 93.74 -6.1757 26 13 3 0 0 0 2.9767E-06 1 66616 66616 99.799 79.384 1 66352000 45174 5575 30025 30764 53121 53121 0.02669945602929147 PFFNSHFF 8 Unmodified _PFFNSHFF_ 0 0 0 REV__ENST00000330720.6_1_19:48885855-48886071:-|nuORF REV__ENST00000330720.6_1_19:48885855-48886071:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2739868164062 2 521.742702 1041.47085 0.58654 0.00030602 0.77425 0.00040396 1.3608 0.00070998 521.7434722696224 79.303 0.16194 78.816 78.707 78.869 -0.4866 9 6 2 0 0 0 8.7369 1 43413 43413 2.8892 0 1 219300 + 45175 25594 30026 30765 53122 53122 -0.04822466928430913 PFFRPNKLF 9 Unmodified _PFFRPNKLF_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.7192077636719 3 389.222076 1164.6444 -0.11817 -4.5995E-05 -3.1263 -0.0012168 -3.2445 -0.0012628 389.2205960446433 29.919 0.39315 29.95 29.84 30.233 0.030106 27 15 3 0 0 0 0.21806 1 15750 15750 2.7352 1.5419 1 1943800 + 45176 17021 30027 30766 53123 53123 0.06866318847846742 PFGFQTVT 8 Unmodified _PFGFQTVT_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7288513183594 2 448.729261 895.443968 0.4298 0.00019287 0.37424 0.00016793 0.80404 0.0003608 448.72927243433264 84.88 0.4177 84.378 84.112 84.53 -0.5015 31 17 2 0 0 0 0.80975 1 46370 46370 0.79363 0.79363 1 915610 45177 10392 30028 30767 53124 53124 -0.007935755396147215 PFGFTKNVL 9 Unmodified _PFGFTKNVL_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2550048828125 2 511.78711 1021.55967 0.46259 0.00023675 -0.47835 -0.00024481 -0.015755 -8.0633E-06 511.7870235879448 72.529 0.25087 72.053 71.938 72.189 -0.47609 18 11 2 0 0 0 0.18882 1 39684 39684 15.847 2.3393 1 1111100 + 45178 22405 30029 30768 53125 53125 0.0497494831122367 PFGGSQQP 8 Unmodified _PFGGSQQP_ 0 0 0 REV__ENST00000483071.1_1_3:50326655-50327355:-|nuORF REV__ENST00000483071.1_1_3:50326655-50327355:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.1974182128906 2 409.195585 816.376617 NaN NaN NaN NaN NaN NaN NaN 27.877 1 27.906 27.406 28.406 0.029564 0 0 0 0.95973 1 14500 14500 8.5933 2.8329 1 + 45179 27735 30030 30769 53126 53126 -0.03891605750573035 PFGKVTNL 8 Unmodified _PFGKVTNL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-1|PTBP3;ENST00000590887.5_1_19:797434-804304:+|nuORF nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2535400390625 2 438.252903 874.491253 1.0089 0.00044216 -0.42507 -0.00018629 0.58385 0.00025587 438.2527342284618 57.551 0.17576 57.485 57.418 57.593 -0.066036 14 8 2 0 0 0 0.66338 1 31380 31380 20.454 0 1 1428000 45180 3421;443;15691 30031 30770 53127 53127 0.04898703731362275 PFGKYSVSF 9 Unmodified _PFGKYSVSF_ 0 0 0 REV__ENST00000567743.5_1_16:66851261-66857485:-|nuORF REV__ENST00000567743.5_1_16:66851261-66857485:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2623291015625 2 516.263468 1030.51238 0.37353 0.00019284 -2.6839 -0.0013856 -2.3104 -0.0011928 516.2619487011721 79.415 0.48562 79.47 79.284 79.77 0.054977 30 18 2 0 0 0 0.094149 1 43900 43900 34.402 2.2848 1 2142400 + 45181 28934 30032 30771 53128 53128 -0.0016533095977138146 PFGKYSVSF 9 Unmodified _PFGKYSVSF_ 0 0 0 REV__ENST00000567743.5_1_16:66851261-66857485:-|nuORF REV__ENST00000567743.5_1_16:66851261-66857485:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.263468 1030.51238 0.37353 0.00019284 -2.6839 -0.0013856 -2.3104 -0.0011928 516.2619487011721 79.415 0.48562 79.47 79.284 79.77 0.054977 -0.020603 -0.00015446 NaN 34.402 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2142400 + 45182 28934 30032 30771 -0.0016533095977138146 PFGLLPKVW 9 Unmodified _PFGLLPKVW_ 0 0 0 REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8790893554688 3 352.879539 1055.61679 0.23525 8.3016E-05 -1.7681 -0.00062393 -1.5329 -0.00054092 352.8788192407347 39.872 0.31859 39.877 39.729 40.048 0.0050545 23 14 2 0 0 0 0.59218 1 21249 21249 0.96228 0.18574 1 2469300 + 45183 28640 30033 30772 53129 53129 0.09120415587608477 PFGLLPKVW 9 Unmodified _PFGLLPKVW_ 0 0 0 REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 352.879539 1055.61679 0.070657 2.4933E-05 -1.1349 -0.00040048 -1.0642 -0.00037555 352.8789000894268 39.849 0.2156 39.849 39.758 39.973 0 -0.014226 0.00048162 NaN 0.96228 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 942150 + 45184 28640 30033 30772 0.09120415587608477 PFGLLPKVW 9 Unmodified _PFGLLPKVW_ 0 0 0 REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF REV__ENST00000544665.7_1_16:31343440-31343671:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.879539 1055.61679 0.23525 8.3016E-05 -1.7681 -0.00062393 -1.5329 -0.00054092 352.8788192407347 39.872 0.31859 39.877 39.729 40.048 0.0050545 0.014226 -0.00018874 NaN 0.96228 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2469300 + 45185 28640 30033 30772 0.09120415587608477 PFGLSPPEDRK 11 Unmodified _PFGLSPPEDRK_ 0 0 0 ENST00000482963.1_1_10:126305912-126306089:+|nuORF ENST00000482963.1_1_10:126305912-126306089:+|nuORF ENST00000482963.1_1_10:126305912-126306089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.8876953125 3 414.887422 1241.64044 -0.05151 -2.1371E-05 0.80819 0.00033531 0.75668 0.00031394 414.8877847659919 18.843 0.13409 18.849 18.767 18.901 0.0060463 9 6 2 0 0 0 0.7187 1 9569 9569 2.2527 1.6259 1 932920 45186 14118 30034 30773 53130 53130 0.029281845634614 PFGNLMYCKVF 11 Unmodified _PFGNLMYCKVF_ 0 0 0 ENST00000358344.7_1_5:177637895-177638144:+|nuORF ENST00000358344.7_1_5:177637895-177638144:+|nuORF ENST00000358344.7_1_5:177637895-177638144:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.3218994140625 2 659.81977 1317.62499 0.53496 0.00035298 -2.3228 -0.0015326 -1.7879 -0.0011797 659.8174722365939 84.479 0.25701 83.98 83.819 84.076 -0.49961 24 11 3 0 0 0 0.54936 1 46193 46193 13.906 1.3745 1 580460 45187 12127 30035 30774 53131 53131 -0.02112141549628177 PFGPSAHPGSF 11 Unmodified _PFGPSAHPGSF_ 0 0 0 ENSG00000112787|ENST00000680143|FBRSL1;nc|ENSG00000112787|Q9HCM7|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7625732421875 2 550.761623 1099.50869 0.7575 0.0004172 -0.94417 -0.00052001 -0.18667 -0.00010281 550.7617461862894 58.155 0.15914 58.094 58.016 58.175 -0.060722 12 7 2 0 0 0 0.46578 1 31691 31691 18.146 0 1 2666500 45188 2922 30036 30775 53132 53132 -0.03708000733627159 PFGYLHCY 8 Unmodified _PFGYLHCY_ 0 0 0 REV__ENSG00000144233|ENST00000272647|AMMECR1L REV__ENSG00000144233|ENST00000272647|AMMECR1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2240295410156 2 500.223288 998.432024 0.17921 8.9643E-05 3.091 0.0015462 3.2703 0.0016359 500.2248732245277 52.001 0.17523 51.568 51.494 51.669 -0.43367 14 8 2 0 0 0 0.76859 1 28097 28097 11.114 0.93107 1 1480600 + 45189 20697 30037 30776 53133 53133 -0.06725515554455797 PFHACATQLGC 11 Unmodified _PFHACATQLGC_ 0 0 0 ENSG00000279961|ENST00000623286|OR8U3 ENSG00000279961|ENST00000623286|OR8U3 ENSG00000279961|ENST00000623286|OR8U3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2529907226562 2 574.254794 1146.49503 0.40283 0.00023133 1.7745 0.001019 2.1774 0.0012504 574.2556601895656 66.731 0.39334 66.247 66.13 66.524 -0.48323 47 18 3 0 0 0 0.54936 1 36427 36427 13.906 5.9959 1 3687800 45190 10943 30038 30777 53134 53134 -0.0723531782871305 PFHERFFRF 9 Unmodified _PFHERFFRF_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2211608886719 3 428.220847 1281.64071 0.33006 0.00014134 0.59688 0.0002556 0.92694 0.00039694 428.2210963691187 49.019 0.20354 48.975 48.867 49.07 -0.04369 16 9 2 0 0 0 0.23158 1 26503 26503 19.362 10.386 1 2124200 45191 3128 30039 30778 53135 53135 0.011156490739722358 PFHFHLVHFLL 11 Unmodified _PFHFHLVHFLL_ 0 0 0 REV__ENST00000285243.6_1_17:48772320-48772401:-|nuORF REV__ENST00000285243.6_1_17:48772320-48772401:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 469.7177734375 3 469.595914 1405.76591 0.76129 0.0003575 3.8534 0.0018096 4.6147 0.0021671 469.5974357475326 42.94 0.14161 38.255 38.163 38.305 -4.6846 11 8 2 0 0 0 0.30303 1 25954 25954 5.4027 2.3304 1 4067200 + 45192 25215 30040 30779 53136 53136 0.07925941210373821 PFHFLRVIELH 11 Unmodified _PFHFLRVIELH_ 0 0 0 REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3993530273438 2 704.398422 1406.78229 -0.012116 -8.5344E-06 -0.11848 -8.3461E-05 -0.1306 -9.1995E-05 704.3983496917787 93.734 0.90093 93.734 93.344 94.245 0 137 56 3 0 0 0 0.72952 1 51939 51939 1.4819 0 1 926800 + 45193 25421 30041 30780 53137 53137 0.09517022376462592 PFHFLRVIELH 11 Unmodified _PFHFLRVIELH_ 0 0 0 REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 704.398422 1406.78229 0.29721 0.00020935 -0.10951 -7.7136E-05 0.1877 0.00013222 704.3981865010386 94.33 1.0448 93.909 93.348 94.393 -0.42044 0.048541 -0.0001249 NaN 1.4819 129 55 3 NaN NaN NaN NaN 0 NaN NaN 0 1037600 + 45194 25421 30041 30780 0.09517022376462592 PFHFLRVIELH 11 Unmodified _PFHFLRVIELH_ 0 0 0 REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF REV__ENST00000310924.6_1_17:77913620-77913725:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 704.398422 1406.78229 2.0476 0.0014423 1.0248 0.00072187 3.0724 0.0021642 704.900702428258 93.916 0.50143 93.939 93.746 94.247 0.022987 0.07816 0.0014731 NaN 1.4819 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1839000 + 45195 25421 30041 30780 0.09517022376462592 PFHGFKSL 8 Unmodified _PFHGFKSL_ 0 0 0 REV__ENST00000394243.5_1_5:150032023-150032371:+|nuORF REV__ENST00000394243.5_1_5:150032023-150032371:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7583312988281 2 466.75307 931.491587 0.89476 0.00041763 1.6214 0.00075678 2.5161 0.0011744 466.7535843227849 40.712 0.88663 36.183 35.705 36.592 -4.5294 108 55 3 0 0 0 0.32798 1 24509 24509 52.268 0 1 77725000 + 45196 26439 30042 30781 53138 53138 0.023101234512296287 PFHHVVLQW 9 Unmodified _PFHHVVLQW_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2093811035156 3 388.210059 1161.60835 0.49829 0.00019344 -2.3428 -0.0009095 -1.8445 -0.00071606 388.20945918637074 22.998 0.37073 20.22 20.002 20.373 -2.7784 57 23 3 0 0 0 0.28047 1 12418 12418 12.241 0 1 27424000 45197 10739 30043 30782 53139 53139 0.03400861671002531 PFHIDWNDDLP 11 Unmodified _PFHIDWNDDLP_ 0 0 0 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 684.8151245117188 2 684.814584 1367.61462 -0.0506 -3.4652E-05 0.75408 0.00051641 0.70348 0.00048176 684.8150283926076 51.243 0.28812 50.83 50.661 50.949 -0.41351 32 14 3 0 0 0 0.6249 1 27589 27589 10.074 6.4774 1 4733800 45198 1583 30044 30783 53140 53140 -0.054487096788079725 PFHIDWNDDLP 11 Unmodified _PFHIDWNDDLP_ 0 0 0 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 ENSG00000091138|ENST00000340010|SLC26A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 684.814584 1367.61462 0.1273 8.7174E-05 0.42212 0.00028907 0.54941 0.00037625 685.3167910888076 50.646 0.22758 50.646 50.477 50.704 0 -0.09215 -0.00035653 NaN 10.074 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2768900 45199 1583 30044 30783 -0.054487096788079725 PFHKELIMI 9 Unmodified _PFHKELIMI_ 0 0 0 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5480041503906 3 376.547572 1126.62089 1.2793 0.00048172 -1.2009 -0.00045218 0.078449 2.954E-05 376.5472595944994 91.131 0.55954 84.956 84.659 85.219 -6.1757 51 32 3 0 0 0 0.10734 1 60153 60153 29.841 0 1 14942000 + 45200 20812 30045 30784 53141 53141 0.06264137019024929 PFHKQPPTY 9 Unmodified _PFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7874755859375 2 557.787641 1113.56073 NaN NaN NaN NaN NaN NaN NaN 28.851 1 28.789 28.289 29.289 -0.062159 0 0 0 0.014214 1 14906 14906 65.235 44.364 1 45201 1780 30046 30785 53142 53142 0.00849162680151494 PFHKQPPTY 9 Unmodified _PFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7879638671875 2 557.787641 1113.56073 NaN NaN NaN NaN NaN NaN NaN 28.73 1 28.759 28.259 29.259 0.029564 0 0 0 0.011986 1 14966 14966 58.679 37.808 1 45202 1780 30046 30785 53143 53143 0.00849162680151494 PFHLKGEA 8 Unmodified _PFHLKGEA_ 0 0 0 REV__nc|ENSG00000183378|Q7RTZ1|OVCH2 REV__nc|ENSG00000183378|Q7RTZ1|OVCH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 449.2734680175781 2 449.742702 897.470852 0.98645 0.00044365 0.44307 0.00019927 1.4295 0.00064292 449.7427289035075 42.94 0.35892 38.255 38.055 38.414 -4.6846 54 22 3 0 0 0 8.7369 1 26128 26128 6.3541 0 1 32799000 + 45203 23343 30047 30786 53144 53144 0.018015330715684286 PFHPLLTPN 9 Unmodified _PFHPLLTPN_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1035.3935546875 1 1035.56219 1034.55492 0.69907 0.00072393 2.0099 0.0020814 2.709 0.0028053 1035.5607701980048 40.843 0.18056 40.841 40.731 40.912 -0.0017929 13 8 2 0 0 0 0.21367 1 21759 21759 4.756 2.1785 1 3244200 + 45204 20496 30048 30787 53145 53145 0.03902064168482866 PFHPPLQLFF 10 Unmodified _PFHPPLQLFF_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8374633789062 2 621.837134 1241.65972 0.33531 0.00020851 0.51164 0.00031816 0.84695 0.00052667 621.8376791555171 100.6 0.24887 94.423 94.254 94.503 -6.1757 36 15 4 0 0 0 0.017458 1 67270 67270 77.984 41.94 1 253590000 45205 685 30049 30788 53146 53146 0.04855185645033089 PFHQLRISY 9 Unmodified _PFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8145141601562 2 580.81419 1159.61383 1.0889 0.00063245 -0.17079 -9.9196E-05 0.91811 0.00053325 580.814086182615 46.149 0.256 46.121 45.973 46.229 -0.028011 22 11 3 0 0 0 0.0087923 1 24794 24794 103.42 55.671 1 6923600 45206 6242 30050 30789 53147 53147 0.040405404628018005 PFHQLRISY 9 Unmodified _PFHQLRISY_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5462646484375 3 387.545219 1159.61383 0.57203 0.00022169 -0.20104 -7.7912E-05 0.37099 0.00014377 387.5451996547192 46.169 0.23197 46.14 45.996 46.228 -0.02969 26 10 3 0 0 0 0.017075 1 24808 24808 61.09 39.553 1 4038700 45207 6242 30050 30789 53148 53148 0.040405404628018005 PFHQRAFI 8 Unmodified _PFHQRAFI_ 0 0 0 REV__nc|ENSG00000070748|P28329-3|CHAT REV__nc|ENSG00000070748|P28329-3|CHAT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1015.088684082031 1 1015.54721 1014.53993 0.52424 0.00053239 -0.30015 -0.00030481 0.2241 0.00022758 1016.5482642066665 41.034 0.12594 41.032 40.989 41.115 -0.0017929 7 5 2 0 0 0 8.7369 1 21909 21909 0.79363 0 1 1197600 + 45208 17479 30051 30790 53149 53149 0.03324617091129767 PFHTSTEMF 9 Oxidation (M) _PFHTSTEM(Oxidation (M))F_ PFHTSTEM(1)F PFHTSTEM(71)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7402954101562 2 556.739499 1111.46445 -0.061749 -3.4378E-05 0.14255 7.9365E-05 0.080805 4.4987E-05 556.7396116321704 34.583 0.24681 34.392 34.271 34.517 -0.19132 34 11 4 0 0 0 0.013472 1 18046 18046 70.716 52.569 1 22423000 45209 6867 30052 30791 53150 53150 1190 -0.08682772942142947 PFHTSTEMF 9 Oxidation (M) _PFHTSTEM(Oxidation (M))F_ PFHTSTEM(1)F PFHTSTEM(71)F 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7396850585938 2 556.739499 1111.46445 -0.096436 -5.369E-05 0.64613 0.00035973 0.54969 0.00030604 556.7401694957254 34.837 0.36544 34.645 34.518 34.883 -0.19131 43 15 4 0 0 0 0.013472 1 18185 18185 70.716 46.695 1 24053000 45210 6867 30052 30791 53151 53151 1190 -0.08682772942142947 PFHTSTEMF 9 Oxidation (M) _PFHTSTEM(Oxidation (M))F_ 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.739499 1111.46445 0.37755 0.0002102 0.89105 0.00049609 1.2686 0.00070628 556.7401929328995 34.334 0.25433 34.361 34.224 34.478 0.027405 -0.048615 0.0008711 NaN 70.716 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2368500 45211 6867 30052 30791 1190 -0.08682772942142947 PFHTSTEMF 9 Oxidation (M) _PFHTSTEM(Oxidation (M))F_ 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.739499 1111.46445 0.32886 0.00018309 0.43033 0.00023958 0.75919 0.00042267 556.7395988299186 34.613 0.21296 34.64 34.5 34.713 0.027401 -0.0026788 -0.00017187 NaN 70.716 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 5274100 45212 6867 30052 30791 1190 -0.08682772942142947 PFHTSTEMF 9 Oxidation (M) _PFHTSTEM(Oxidation (M))F_ 0 0 1 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 556.739499 1111.46445 0.76531 0.00042608 0.47049 0.00026194 1.2358 0.00068802 556.7397488270263 38.906 0.31826 34.455 34.298 34.616 -4.4509 0.045248 0.00040282 NaN 70.716 52 19 3 NaN NaN NaN NaN 0 NaN NaN 0 37744000 45213 6867 30052 30791 1190 -0.08682772942142947 PFHTSTEMF 9 Unmodified _PFHTSTEMF_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7427978515625 2 548.742042 1095.46953 0.71866 0.00039436 0.54797 0.0003007 1.2666 0.00069505 548.7426748741347 52.426 0.45575 46.691 46.469 46.925 -5.7345 68 25 4 0 0 0 0.023164 1 33100 33100 60.39 31.903 1 116370000 45214 6867 30052 30792 53152 53152 -0.07438469079511378 PFHTSTEMF 9 Unmodified _PFHTSTEMF_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.742042 1095.46953 0.6094 0.0003344 0.18391 0.00010092 0.79331 0.00043532 548.7419992525793 47.046 0.23166 46.71 46.582 46.814 -0.33664 -0.0050891 -0.00021256 NaN 60.39 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4151700 45215 6867 30052 30792 -0.07438469079511378 PFHTSTEMF 9 Unmodified _PFHTSTEMF_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.742042 1095.46953 1.3562 0.00074421 0.28063 0.00015399 1.6368 0.0008982 548.742133682725 46.777 0.17795 46.744 46.596 46.774 -0.033417 0.028834 -0.00010641 NaN 60.39 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1334200 45216 6867 30052 30792 -0.07438469079511378 PFIDSQHVI 9 Unmodified _PFIDSQHVI_ 0 0 0 ENST00000495270.1_1_9:130698003-130699012:-|nuORF;ENSG00000136908|ENST00000314392|DPM2 ENST00000495270.1_1_9:130698003-130699012:-|nuORF ENST00000495270.1_1_9:130698003-130699012:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2796630859375 2 528.279649 1054.54475 0.38166 0.00020163 1.0714 0.000566 1.4531 0.00076762 528.2795063170814 52.053 0.35683 51.62 51.494 51.851 -0.43367 34 17 3 0 0 0 0.017075 1 28095 28095 66.457 24.617 1 5450500 45217 4880 30053 30793 53153 53153 0.0196545644323578 PFIKSQHELLF 11 Unmodified _PFIKSQHELLF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.9217834472656 3 453.587084 1357.73942 1.1479 0.00052069 -0.75515 -0.00034253 0.39278 0.00017816 453.58660843525774 57.965 0.3181 57.899 57.735 58.053 -0.066032 46 15 4 0 0 0 0.58245 1 31524 31524 12.228 7.8214 1 15709000 45218 8420 30054 30794 53154 53154 0.07486207528359046 PFIKSQHELLF 11 Unmodified _PFIKSQHELLF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.5873413085938 3 453.587084 1357.73942 1.3396 0.00060762 0.070232 3.1856E-05 1.4098 0.00063947 453.921380105939 87.896 0.48012 81.72 81.476 81.956 -6.1757 57 26 3 0 0 0 0.44612 2 57885 57885;58013 19.144 9.9002 1 24371000 45219 8420 30054 30794 53155;53156 53155 0.07486207528359046 PFINWTSPRY 10 Unmodified _PFINWTSPRY_ 0 0 0 REV__ENST00000550735.6_1_12:112336541-112336799:+|nuORF REV__ENST00000550735.6_1_12:112336541-112336799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.8256225585938 2 640.824755 1279.63496 -0.0053199 -3.4091E-06 1.1227 0.00071946 1.1174 0.00071605 640.8249687462073 85.44 0.3119 85.44 85.269 85.581 0 22 12 3 0 0 0 0.70951 1 47336 47336 1.8442 0.36234 1 367960 + 45220 28706 30055 30795 53157 53157 0.006325057716367155 PFIPDSKTVY 10 Unmodified _PFIPDSKTVY_ 0 0 0 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 ENSG00000185974|ENST00000335678|GRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.965576171875 2 583.808239 1165.60193 0.32125 0.00018755 0.951 0.0005552 1.2722 0.00074275 583.8088211610285 93.688 0.71696 93.23 92.862 93.579 -0.4574 94 31 4 0 0 0 0.68719 1 51021 51021 4.3292 0.73274 1 2031600 45221 9437 30056 30796 53158 53158 0.025748789289536944 PFISQKIHF 9 Unmodified _PFISQKIHF_ 0 0 0 ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED ENST00000525244.5_1_11:85956313-85988207:+|nuORF ENST00000525244.5_1_11:85956313-85988207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8778076171875 3 372.878198 1115.61277 0.052758 1.9672E-05 0.25075 9.3498E-05 0.3035 0.00011317 372.87828273205804 51.725 0.30023 51.666 51.513 51.814 -0.058918 24 14 3 0 0 0 0.15471 1 28012 28012 27.629 18.883 1 2505400 45222 1122 30057 30797 53159 53159 0.05958326093877986 PFIVGIDSRY 10 Unmodified _PFIVGIDSRY_ 0 0 0 nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000174485|Q7Z401|DENND4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8153686523438 2 583.813856 1165.61316 0.72974 0.00042603 1.2705 0.00074172 2.0002 0.0011678 583.8155029641937 77.967 1.0607 71.791 71.065 72.126 -6.1757 130 60 4 0 0 0 0.38092 1 51174 51174 22.736 6.8891 1 40865000 45223 8426 30058 30798 53160 53160 0.036977010230884844 PFIYAFRSP 9 Unmodified _PFIYAFRSP_ 0 0 0 ENSG00000185231|ENST00000327606|MC2R ENSG00000185231|ENST00000327606|MC2R ENSG00000185231|ENST00000327606|MC2R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.7159423828125 3 366.530798 1096.57057 1.6248 0.00059554 -1.2876 -0.00047194 0.33721 0.0001236 366.53060131273963 79.159 0.60255 72.983 72.564 73.167 -6.1757 55 33 2 0 0 0 0.19613 1 51885 51885 4.897 0 1 7063100 45224 9347 30059 30799 53161 53161 0.026143506855078158 PFIYGHKY 8 Unmodified _PFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.76806640625 2 512.766178 1023.5178 0.67536 0.0003463 -0.6782 -0.00034776 -0.0028457 -1.4592E-06 512.7658536990529 40.379 0.25788 40.384 40.212 40.47 0.0050583 27 11 3 0 0 0 0.24071 1 21483 21483 63.563 20.595 1 7245900 45225 1707 30060 30800 53162 53162 0.0069839262271216285 PFIYGHKY 8 Unmodified _PFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7666015625 2 512.766178 1023.5178 0.48105 0.00024667 -2.3439 -0.0012019 -1.8629 -0.00095522 512.7646449161196 44.613 0.56493 39.761 39.471 40.036 -4.852 56 43 2 0 0 0 0.19792 2 27340 27214;27340 70.716 17.14 1 19735000 45226 1707 30060 30800 53163;53164 53164 0.0069839262271216285 PFKFEEEGF 9 Unmodified _PFKFEEEGF_ 0 0 0 REV__nc|ENSG00000079785|Q92499-3|DDX1 REV__nc|ENSG00000079785|Q92499-3|DDX1 MSMS AL20221201_MKP_PDAC_01 4 565.26416015625 2 565.263665 1128.51278 NaN NaN NaN NaN NaN NaN NaN 94.628 1 88.453 87.953 88.953 -6.1757 0 0 0 0.70111 1 62676 62676 9.3474 0 1 + 45227 17653 30061 30801 53165 53165 -0.04633956030579611 PFKFKFKKK 9 Unmodified _PFKFKFKKK_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3804931640625 2 599.378969 1196.74339 1.0626 0.00063687 1.1783 0.00070624 2.2408 0.0013431 599.3796104325705 100.86 0.19569 94.68 94.584 94.78 -6.1757 35 12 4 0 0 0 0.60285 1 67514 67514 2.3027 0 1 163280000 + 45228 19249 30062 30802 53166 53166 0.15288341812743056 PFKFSDHY 8 Unmodified _PFKFSDHY_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.2774658203125 2 520.745442 1039.47633 0.63571 0.00033105 -0.91187 -0.00047485 -0.27615 -0.0001438 520.7447220877089 32.847 0.2284 28.991 28.832 29.061 -3.8562 26 12 3 0 0 0 8.7369 1 18801 18801 50.855 22.368 1 12216000 45229 16120 30063 30803 53167 53167 -0.04182788136608906 PFKKPFPQKE 10 Unmodified _PFKKPFPQKE_ 0 0 0 REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8541259765625 2 623.353148 1244.69174 0.9298 0.00057959 1.8402 0.0011471 2.77 0.0017267 623.354404774362 70.459 0.3001 70.495 70.312 70.612 0.035515 24 13 2 0 0 0 0.23057 1 38795 38795 8.7454 1.4562 1 4756600 + 45230 20688 30064 30804 53168 53168 0.07918553328181588 PFKPPKVAF 9 Unmodified _PFKPPKVAF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8079833984375 2 515.807845 1029.60114 -0.11386 -5.8728E-05 -0.082297 -4.2449E-05 -0.19615 -0.00010118 515.8077346376306 56.297 0.89038 56.228 55.626 56.517 -0.068741 106 46 3 0 0 0 0.011968 4 30494 30385;30494;30604;30715 74.929 37.444 1 20059000 45231 2644;1259 30065 30805 53169;53170;53171;53172 53170 0.08752129070558112 PFKPPKVTF 9 Unmodified _PFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.81298828125 2 530.813128 1059.6117 0.066446 3.527E-05 -1.215 -0.00064496 -1.1486 -0.00060969 530.8125238921048 56.488 0.76008 56.419 56 56.76 -0.068737 81 38 3 0 0 0 0.0093064 4 30647 30538;30647;30761;30864 83.429 47.743 1 14642000 45232 9035 30066 30806 53173;53174;53175;53176 53174 0.0842811172499296 PFKPPKVTF 9 Unmodified _PFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8132934570312 2 530.813128 1059.6117 0.25875 0.00013735 0.45158 0.00023971 0.71034 0.00037706 530.8133496545453 77.18 0.75146 71.004 70.521 71.273 -6.1757 71 41 2 0 0 0 0.0061223 3 50246 50246;50361;50511 114.2 53.812 1 17738000 45233 9035 30066 30806 53177;53178;53179 53177 0.0842811172499296 PFKPPKVTF 9 Unmodified _PFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.814453125 2 530.813128 1059.6117 0.71799 0.00038112 0.96579 0.00051265 1.6838 0.00089377 530.8137444047771 77.508 0.63728 71.332 71.1 71.737 -6.1757 58 36 2 0 0 0 0.0061223 3 50636 50636;50778;50901 114.2 62.786 1 13281000 45234 9035 30066 30806 53180;53181;53182 53180 0.0842811172499296 PFKRLSVVF 9 Unmodified _PFKRLSVVF_ 0 0 0 ENSG00000188186|ENST00000341942|LAMTOR4 ENSG00000188186|ENST00000341942|LAMTOR4 ENSG00000188186|ENST00000341942|LAMTOR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8911743164062 3 364.890327 1091.64915 1.763 0.00064332 -2.2244 -0.00081166 -0.46135 -0.00016834 365.22337408236996 89.847 0.39644 83.672 83.452 83.848 -6.1757 36 21 3 0 0 0 0.2324 1 59328 59328 20.415 5.1661 1 9261700 45235 9638 30067 30807 53183 53183 0.10699202990599588 PFKSPSIGF 9 Unmodified _PFKSPSIGF_ 0 0 0 ENSG00000186591|ENST00000355621|UBE2H;ENST00000486283.1_1_7:129497270-129520783:-|nuORF ENSG00000186591|ENST00000355621|UBE2H ENSG00000186591|ENST00000355621|UBE2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2668151855469 2 490.26601 978.517468 0.17441 8.5508E-05 0.59094 0.00028972 0.76535 0.00037523 490.26613165521536 54.039 0.35606 53.972 53.786 54.142 -0.066936 52 17 4 0 0 0 0.010301 2 29289 29289;29395 79.596 43.469 1 13638000 45236 9486 30068 30808 53184;53185 53184 0.027349729028628644 PFKSPSIGF 9 Unmodified _PFKSPSIGF_ 0 0 0 ENSG00000186591|ENST00000355621|UBE2H;ENST00000486283.1_1_7:129497270-129520783:-|nuORF ENSG00000186591|ENST00000355621|UBE2H ENSG00000186591|ENST00000355621|UBE2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2663269042969 2 490.26601 978.517468 0.90936 0.00044583 0.14927 7.3184E-05 1.0586 0.00051901 490.26600700301 59.978 0.41819 53.863 53.665 54.083 -6.1147 37 22 2 0 0 0 0.0038489 1 38529 38529 122.18 72.246 1 36921000 45237 9486 30068 30808 53186 53186 0.027349729028628644 PFLDVPQA 8 Unmodified _PFLDVPQA_ 0 0 0 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7368469238281 2 443.737086 885.459619 -0.84317 -0.00037415 0.19009 8.4349E-05 -0.65308 -0.0002898 443.7371999533954 77.981 0.61604 77.499 77.166 77.782 -0.4826 67 40 2 0 0 0 0.72953 1 42604 42604 14.582 2.0501 1 4508200 45238 5745 30069 30809 53187 53187 0.01230710977426952 PFLDVPQA 8 Unmodified _PFLDVPQA_ 0 0 0 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 ENSG00000146005|ENST00000274710|PSD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7383117675781 2 443.737086 885.459619 0.56266 0.00024967 0.16749 7.4322E-05 0.73015 0.00032399 443.7370796937198 85.59 0.60664 79.414 79.153 79.76 -6.1757 56 35 2 0 0 0 0.61462 2 56331 56331;56466 24.674 6.5389 1 19792000 45239 5745 30069 30809 53188;53189 53188 0.01230710977426952 PFLEFYKHAL 10 Unmodified _PFLEFYKHAL_ 0 0 0 REV__nc|ENSG00000164100|O95803-3|NDST3 REV__nc|ENSG00000164100|O95803-3|NDST3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.877685546875 3 422.229008 1263.66519 0.29264 0.00012356 -1.5281 -0.0006452 -1.2354 -0.00052164 422.56247885794005 49.112 0.14994 49.069 48.964 49.114 -0.04369 9 6 2 0 0 0 0.23661 1 26549 26549 7.9454 2.5427 1 670030 + 45240 21868 30070 30810 53190 53190 0.04390864436868469 PFLELTPLSL 10 Unmodified _PFLELTPLSL_ 0 0 0 REV__ENST00000493232.5_1_7:2578318-2579295:-|nuORF REV__ENST00000493232.5_1_7:2578318-2579295:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2212219238281 3 377.221631 1128.64306 1.7997 0.0006789 -2.6792 -0.0010106 -0.87945 -0.00033175 377.2208405188461 40.869 0.18988 36.262 36.211 36.401 -4.6079 17 11 2 0 0 0 0.52888 1 24503 24503 8.9762 0 1 4912700 + 45241 27916 30071 30811 53191 53191 0.08388639968438838 PFLFPDYRI 9 Unmodified _PFLFPDYRI_ 0 0 0 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8052368164062 3 389.878087 1166.61243 NaN NaN NaN NaN NaN NaN NaN 32.03 1 32.03 31.53 32.53 0 0 0 0 0.84369 1 16708 16708 1.1933 0 1 45242 2070 30072 30812 53192 53192 0.035789063740367055 PFLFRRPL 8 Unmodified _PFLFRRPL_ 0 0 0 ENST00000397981.7_1_19:7977316-7977859:+|nuORF ENST00000397981.7_1_19:7977316-7977859:+|nuORF ENST00000397981.7_1_19:7977316-7977859:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.3189697265625 2 523.318912 1044.62327 0.81549 0.00042676 -0.43012 -0.00022509 0.38538 0.00020167 523.3186916735932 80.252 0.7 79.762 79.479 80.179 -0.48932 49 27 2 0 0 0 0.72953 1 43919 43919 14.582 0 1 615040 45243 12836 30073 30813 53193 53193 0.1027435353898909 PFLFVEDFV 9 Unmodified _PFLFVEDFV_ 0 0 0 REV__ENSG00000170743|ENST00000318881|SYT9 REV__ENSG00000170743|ENST00000318881|SYT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7884521484375 2 556.786776 1111.559 NaN NaN NaN NaN NaN NaN NaN 88.906 1 88.401 87.901 88.901 -0.50423 0 0 0 0.82015 1 48617 48617 5.2307 1.6342 1 + 45244 22507 30074 30814 53194 53194 0.007681088715116857 PFLGFTLRSI 10 Unmodified _PFLGFTLRSI_ 0 0 0 REV__chr22:23830348-23833572|44|49.39|0.34|7.18|+|0|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|7 REV__chr22:23830348-23833572|44|49.39|0.34|7.18|+|0|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2265319824219 3 384.225486 1149.65463 1.4938 0.00057396 0.45663 0.00017545 1.9504 0.00074941 384.22569774151094 87.06 0.74961 80.884 80.528 81.277 -6.1757 111 40 4 0 0 0 0.43662 2 57360 57360;57499 19.626 9.4754 1 85024000 + 45245 16807 30075 30815 53195;53196 53195 0.0857888178243229 PFLGFTLRSI 10 Unmodified _PFLGFTLRSI_ 0 0 0 REV__chr22:23830348-23833572|44|49.39|0.34|7.18|+|0|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|7 REV__chr22:23830348-23833572|44|49.39|0.34|7.18|+|0|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8347778320312 2 575.834591 1149.65463 1.3882 0.00079937 -0.93409 -0.00053788 0.45411 0.00026149 575.834007277462 97.691 0.21574 91.515 91.384 91.6 -6.1757 27 13 3 0 0 0 0.52659 1 64722 64722 17.113 6.3134 1 70702000 + 45246 16807 30075 30815 53197 53197 0.0857888178243229 PFLGSDLLL 9 Unmodified _PFLGSDLLL_ 0 0 0 REV__ENST00000565677.5_1_16:732528-732699:+|nuORF REV__ENST00000565677.5_1_16:732528-732699:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5573120117188 1 974.55571 973.548434 0.26414 0.00025742 1.5871 0.0015467 1.8513 0.0018042 974.5575245283438 97.463 0.39274 97.221 96.979 97.371 -0.24277 45 17 4 0 0 0 0.045537 1 53253 53253 46.921 6.4723 1 17011000 + 45247 28913 30076 30816 53198 53198 0.06060126217107609 PFLGSDLLL 9 Unmodified _PFLGSDLLL_ 0 0 0 REV__ENST00000565677.5_1_16:732528-732699:+|nuORF REV__ENST00000565677.5_1_16:732528-732699:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 974.55571 973.548434 0.14738 0.00014363 2.5407 0.0024761 2.6881 0.0026197 974.5587272205197 97.104 0.17546 97.104 97.018 97.194 0 -0.058142 0.00078153 NaN 46.921 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 835710 + 45248 28913 30076 30816 0.06060126217107609 PFLHHLQPF 9 Unmodified _PFLHHLQPF_ 0 0 0 ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3101196289062 2 568.306001 1134.59745 1.488 0.00084564 2.9831 0.0016953 4.4711 0.0025409 568.3074839539115 96.575 0.32039 90.4 90.354 90.674 -6.1757 26 18 2 0 0 0 0.2001 1 64118 64118 23.148 2.6948 1 28251000 45249 10429 30077 30817 53199 53199 0.03553459296699657 PFLHLHNM 8 Unmodified _PFLHLHNM_ 0 0 0 ENST00000524507.5_1_11:117100562-117102552:-|nuORF;ENST00000532301.5_1_11:117100562-117101901:-|nuORF;ENST00000320934.7_1_11:117100562-117103224:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF ENST00000524507.5_1_11:117100562-117102552:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7557067871094 2 504.75783 1007.50111 0.16226 8.1904E-05 -1.785 -0.000901 -1.6227 -0.00081909 504.7565874744369 85.493 0.35214 79.318 79.093 79.445 -6.1757 29 21 2 0 0 0 0.65867 1 56258 56258 20.871 1.4322 1 22379000 45250 11768 30078 30818 53200 53200 -0.0023443153488642565 PFLISYSY 8 Unmodified _PFLISYSY_ 0 0 0 ENST00000498816.1_1_10:18629789-18787496:+|nuORF ENST00000498816.1_1_10:18629789-18787496:+|nuORF ENST00000498816.1_1_10:18629789-18787496:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.5078125 1 989.497861 988.490584 0.84201 0.00083317 -0.35532 -0.00035158 0.4867 0.00048159 989.4973356832392 73.885 0.53413 67.71 67.53 68.064 -6.1757 54 26 3 0 0 0 0.72953 1 48332 48332 14.582 2.0501 1 14195000 45251 14431 30079 30819 53201 53201 -0.004121357083363364 PFLKDYIDFK 10 Unmodified _PFLKDYIDFK_ 0 0 0 REV__nc|ENSG00000189164|Q8NB42-2|ZNF527 REV__nc|ENSG00000189164|Q8NB42-2|ZNF527 MSMS AL20221201_MKP_PDAC_01 4 429.2328796386719 3 429.232418 1284.67542 NaN NaN NaN NaN NaN NaN NaN 52.051 1 46.317 45.817 46.817 -5.7345 0 0 0 0.96104 1 32829 32829 2.6312 0.54523 1 + 45252 29870 30080 30820 53202 53202 0.04447427371383128 PFLLENPSGY 10 Unmodified _PFLLENPSGY_ 0 0 0 ENSG00000214160|ENST00000397676|ALG3;nc|ENSG00000214160|Q92685-2|ALG3 ENSG00000214160|ENST00000397676|ALG3 ENSG00000214160|ENST00000397676|ALG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2190551757812 2 568.784764 1135.55498 0.25052 0.00014249 -1.3722 -0.00078051 -1.1217 -0.00063802 568.7838996489837 62.215 0.26083 62.215 62.044 62.304 0 22 13 2 0 0 0 0.23821 1 34651 34651 4.3292 0 1 2032900 45253 10483 30081 30821 53203 53203 -0.007379806221706531 PFLLHVTG 8 Unmodified _PFLLHVTG_ 0 0 0 REV__ENST00000517554.1_1_18:8784664-8786368:+|nuORF REV__ENST00000517554.1_1_18:8784664-8786368:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2540893554688 2 442.255446 882.496338 NaN NaN NaN NaN NaN NaN NaN 22.152 1 22.175 21.675 22.675 0.022896 0 0 0 0.97348 1 11261 11261 5.7604 0 1 + 45254 28226 30082 30822 53204 53204 0.05039007593995848 PFLLPFTVH 9 Unmodified _PFLLPFTVH_ 0 0 0 REV__nc|ENSG00000179873|P59045-3|NLRP11 REV__nc|ENSG00000179873|P59045-3|NLRP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5384826660156 3 357.539294 1069.59605 NaN NaN NaN NaN NaN NaN NaN 44.322 1 44.3 43.8 44.8 -0.022064 0 0 0 0.82396 1 23779 23779 2.7352 0 1 + 45255 23123 30083 30823 53205 53205 0.0640382520791718 PFLLPLRGVA 10 Unmodified _PFLLPLRGVA_ 0 0 0 REV__ENST00000476089.1_1_2:182322160-182322253:+|nuORF REV__ENST00000476089.1_1_2:182322160-182322253:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8400268554688 2 541.839677 1081.6648 0.10848 5.8777E-05 0.15677 8.4947E-05 0.26525 0.00014372 541.8397075215638 88.421 0.42491 88.474 88.256 88.681 0.053352 51 17 4 0 0 0 0.06987 2 49141 49141;49241 54.774 0 1 98074000 + 45256 27587 30084 30824 53206;53207 53206 0.1272348950765263 PFLLRKRMLF 10 Unmodified _PFLLRKRMLF_ 0 0 0 REV__nc|ENSG00000114859|P51788-4|CLCN2 REV__nc|ENSG00000114859|P51788-4|CLCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.904052734375 2 660.902285 1319.79002 NaN NaN NaN NaN NaN NaN NaN 59.783 1 59.73 59.23 60.23 -0.053062 0 0 0 0.96627 1 32595 32595 4.3292 0.73274 1 + 45257 18938 30085 30825 53208 53208 0.1429145837237229 PFLLVPML 8 Unmodified _PFLLVPML_ 0 0 0 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 REV__nc|ENSG00000141485|Q86YT5-2|SLC13A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.553466796875 1 929.552873 928.545597 1.1597 0.001078 0.1427 0.00013265 1.3024 0.0012106 929.5534500392325 102.51 0.057457 96.338 96.316 96.373 -6.1757 11 6 2 0 0 0 0.5245 1 68792 68792 32.454 0 1 3570100 + 45258 20538 30086 30826 53209 53209 0.07846579558577105 PFLLYGGLL 9 Unmodified _PFLLYGGLL_ 0 0 0 REV__ENST00000344423.9_1_8:28205681-28205759:-|nuORF REV__ENST00000344423.9_1_8:28205681-28205759:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.796142578125 2 496.794404 991.574254 -0.47102 -0.000234 3.567 0.0017721 3.096 0.0015381 496.79620243521595 101.64 0.088989 101.59 101.55 101.64 -0.045853 4 2 2 0 0 0 0.46577 1 56484 56484 9.3474 0.75416 1 4109200 + 45259 25742 30087 30827 53210 53210 0.07813020459389008 PFLNAFITL 9 Unmodified _PFLNAFITL_ 0 0 0 REV__ENST00000561637.5_1_16:1821439-1821535:-|nuORF REV__ENST00000561637.5_1_16:1821439-1821535:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2965087890625 2 518.29731 1034.58007 0.248 0.00012854 -1.4577 -0.0007555 -1.2097 -0.00062697 518.2963314318827 75.626 0.32587 75.674 75.494 75.82 0.047943 36 14 3 0 0 0 0.23158 1 41780 41780 20.454 0 1 5013700 + 45260 18275 30088 30828 53211 53211 0.06416118971037577 PFLNRAGVLF 10 Unmodified _PFLNRAGVLF_ 0 0 0 REV__ENST00000367091.7_1_1:207095210-207095324:-|nuORF REV__ENST00000367091.7_1_1:207095210-207095324:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.2002258300781 3 378.553715 1132.63931 1.7461 0.00066101 1.8604 0.00070426 3.6065 0.0013653 378.5544246172305 40.959 0.17264 36.351 36.311 36.484 -4.6079 14 10 2 0 0 0 0.23227 1 24576 24576 3.5871 0 1 4955900 + 45261 25972 30089 30829 53212 53212 0.07830014985211164 PFLPASNLF 9 Unmodified _PFLPASNLF_ 0 0 0 ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF ENST00000489713.5_1_13:101277731-101290025:-|nuORF ENST00000489713.5_1_13:101277731-101290025:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.2753295898438 2 503.273835 1004.53312 NaN NaN NaN NaN NaN NaN NaN 99.819 1 93.643 93.143 94.143 -6.1757 0 0 0 0.071041 1 66594 66594 50.855 0 1 45262 3834 30090 30830 53213 53213 0.03103259419913229 PFLPASNLFF 10 Unmodified _PFLPASNLFF_ 0 0 0 ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4;ENST00000478272.1_1_13:101287253-101288829:-|nuORF ENST00000489713.5_1_13:101277731-101290025:-|nuORF ENST00000489713.5_1_13:101277731-101290025:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 576.8099365234375 2 576.808042 1151.60153 NaN NaN NaN NaN NaN NaN NaN 101.59 1 95.413 94.913 95.913 -6.1757 0 0 0 0.073691 1 68171 68171 64.236 0 1 45263 3834 30091 30831 53214 53214 0.03179503999763256 PFLPDLEEL 9 Unmodified _PFLPDLEEL_ 0 0 0 nc|ENSG00000114248|Q6UY01-3|LRRC31;nc|ENSG00000114248|Q6UY01-4|LRRC31;ENSG00000114248|ENST00000316428|LRRC31 nc|ENSG00000114248|Q6UY01-3|LRRC31 nc|ENSG00000114248|Q6UY01-3|LRRC31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1906127929688 3 358.190219 1071.54883 1.1279 0.00040401 0.41561 0.00014887 1.5435 0.00055288 358.1903670081346 17.506 0.34047 14.919 14.765 15.106 -2.5866 170 66 3 0 0 0 0.28047 1 9125 9125 17.113 6.289 1 19198000 45264 3025 30092 30832 53215 53215 0.01591501146299379 PFLPHKLLF 9 Unmodified _PFLPHKLLF_ 0 0 0 ENST00000199389.10_1_7:6064110-6064239:-|nuORF ENST00000199389.10_1_7:6064110-6064239:-|nuORF ENST00000199389.10_1_7:6064110-6064239:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2276306152344 3 371.226939 1110.65899 NaN NaN NaN NaN NaN NaN NaN 36.226 1 36.251 35.751 36.751 0.024967 0 0 0 0.83812 1 19188 19188 2.9952 0 1 45265 10984 30093 30833 53216 53216 0.1080839099597597 PFLPQLQTTF 10 Unmodified _PFLPQLQTTF_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3246459960938 2 596.324057 1190.63356 0.2546 0.00015183 0.69825 0.00041638 0.95285 0.00056821 596.32442498329 99.129 0.17024 92.953 92.878 93.048 -6.1757 14 9 2 0 0 0 5.3273E-08 1 65933 65933 144.35 92.082 1 32171000 45266 1517 30094 30834 53217 53217 0.045868716828636025 PFLPSQARHQ 10 Unmodified _PFLPSQARHQ_ 0 0 0 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 MSMS AL20221201_MKP_PDAC_01 4 394.2132263183594 3 394.21224 1179.61489 NaN NaN NaN NaN NaN NaN NaN 35.924 1 31.731 31.231 32.231 -4.1928 0 0 0 0.85122 1 20917 20917 5.7834 3.1522 1 + 45267 23147 30095 30835 53218 53218 0.03226754831712242 PFLQASPHF 9 Unmodified _PFLQASPHF_ 0 0 0 ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.268310546875 2 522.269084 1042.52362 -1.0211 -0.0005333 0.38151 0.00019925 -0.63962 -0.00033405 522.2692588622486 56.269 0.21391 55.783 55.689 55.903 -0.48554 19 10 2 0 0 0 0.0014543 1 30535 30535 136.33 91.926 1 9494200 45268 5879 30096 30836 53219 53219 0.004054911343473577 PFLQASPHF 9 Unmodified _PFLQASPHF_ 0 0 0 ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2680053710938 2 522.269084 1042.52362 -0.49672 -0.00025942 0.64506 0.0003369 0.14834 7.7475E-05 522.2694488782461 55.916 0.48909 55.847 55.626 56.115 -0.068737 93 25 5 0 0 0 0.0030184 2 30345 30345;30447 126.57 82.159 1 174000000 45269 5879 30096 30836 53220;53221 53220 0.004054911343473577 PFLQASPHF 9 Unmodified _PFLQASPHF_ 0 0 0 ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A ENSG00000147689|ENST00000690554|FAM83A MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2695922851562 2 522.269084 1042.52362 0.55939 0.00029215 0.18057 9.4308E-05 0.73996 0.00038646 522.2691846884313 62.014 0.54692 55.839 55.557 56.104 -6.1757 99 30 4 0 0 0 0.0030184 2 39874 39874;40001 126.57 90.522 1 523580000 45270 5879 30096 30836 53222;53223 53222 0.004054911343473577 PFLQFVRYREK 11 Unmodified _PFLQFVRYREK_ 0 0 0 ENST00000539611.1_1_12:49346904-49347045:-|nuORF ENST00000539611.1_1_12:49346904-49347045:-|nuORF ENST00000539611.1_1_12:49346904-49347045:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.9125366210938 2 741.914436 1481.81432 NaN NaN NaN NaN NaN NaN NaN 87.284 1 87.342 86.842 87.842 0.05822 0 0 0 0.76159 1 48520 48520 13.906 5.7505 1 45271 15022 30097 30837 53224 53224 0.09268390059582998 PFLRFFPN 8 Unmodified _PFLRFFPN_ 0 0 0 nc|ENSG00000231852|P08686-2|CYP21A2;ENSG00000231852|ENST00000644719|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 nc|ENSG00000231852|P08686-2|CYP21A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.886962890625 1 1037.55671 1036.54944 0.82929 0.00086044 -0.14465 -0.00015008 0.68464 0.00071035 1037.5569532425952 47.933 0.60331 47.894 47.62 48.224 -0.038643 35 29 2 0 0 0 8.7369 1 25925 25925 2.5775 0 1 3334900 45272 10621 30098 30838 53225 53225 0.03262385376660859 PFLRHLPPPF 10 Unmodified _PFLRHLPPPF_ 0 0 0 SLC52A1|p.S137R|1|0.08|ENSG00000132517|chr17:5034078-5034078|G/T|missense_variant SLC52A1|p.S137R|1|0.08|ENSG00000132517|chr17:5034078-5034078|G/T|missense_variant SLC52A1|p.S137R|1|0.08|ENSG00000132517|chr17:5034078-5034078|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5694580078125 3 407.569476 1219.6866 0.28991 0.00011816 0.2536 0.00010336 0.54352 0.00022152 407.56961021488377 14.966 0.62642 12.439 12.128 12.754 -2.5273 236 100 3 0 0 0 0.55245 1 7671 7671 13.615 0 1 8990500 45273 30166 30099 30839 53226 53226 0.08554294256214234 PFLRRRSWLS 10 Unmodified _PFLRRRSWLS_ 0 0 0 ENSG00000155016|ENST00000332884|CYP2U1;ENST00000508453.1_1_4:108852799-108857674:+|nuORF;nc|ENSG00000155016|Q7Z449-2|CYP2U1;ENST00000513302.1_1_4:108852745-108856764:+|nuORF ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2573547363281 3 439.922801 1316.74657 0.77407 0.00034053 -0.94256 -0.00041465 -0.16849 -7.4123E-05 439.9222976840515 58.793 0.2503 58.732 58.588 58.839 -0.060719 31 12 3 0 0 0 0.49559 1 32005 32005 16.566 2.3477 1 4265900 45274 6361 30100 30840 53227 53227 0.10086984919462338 PFLSGEVLC 9 Unmodified _PFLSGEVLC_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7440490722656 2 482.744053 963.473554 0.81908 0.00039541 0.14091 6.8021E-05 0.95999 0.00046343 482.7439415625601 75.528 0.16708 75.051 75.023 75.19 -0.47714 10 7 2 0 0 0 0.53666 1 41364 41364 5.2307 0 1 435350 45275 9690 30101 30841 53228 53228 -0.009643795857869009 PFLSQLKD 8 Unmodified _PFLSQLKD_ 0 0 0 REV__ENST00000260641.9_1_2:65495857-65495899:+|nuORF REV__ENST00000260641.9_1_2:65495857-65495899:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 474.2625427246094 2 474.263468 946.512382 NaN NaN NaN NaN NaN NaN NaN 101.67 1 95.492 94.992 95.992 -6.1757 0 0 0 0.94061 1 68234 68234 12.532 0.89125 1 + 45276 24966 30102 30842 53229 53229 0.03698669040227287 PFLTFDDLL 9 Unmodified _PFLTFDDLL_ 0 0 0 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 ENSG00000134440|ENST00000256854|NARS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.7569580078125 2 540.784233 1079.55391 1.3625 0.00073682 -0.0016131 -8.7236E-07 1.3609 0.00073595 540.7845592744027 100.96 0.11604 94.788 94.734 94.85 -6.1757 9 6 2 0 0 0 0.18941 1 67608 67608 14.582 4.3983 1 28237000 45277 4607 30103 30843 53230 53230 0.017318050088988457 PFLYDFYHYFY 11 Unmodified _PFLYDFYHYFY_ 0 0 0 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 ENSG00000101188|ENST00000370501|NTSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 788.3557739257812 2 787.853178 1573.6918 1.2874 0.0010143 0.96305 0.00075874 2.2505 0.001773 788.3553464701706 93.888 0.25871 87.712 87.603 87.862 -6.1757 23 14 2 0 0 0 0.70701 1 62157 62157 3.5965 0.31518 1 10492000 45278 1926 30104 30844 53231 53231 -0.0720949146248131 PFNFFEWS 8 Unmodified _PFNFFEWS_ 0 0 0 REV__ENST00000450783.5_1_1:231658373-231663995:-|nuORF REV__ENST00000450783.5_1_1:231658373-231663995:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2390747070312 2 537.239993 1072.46543 0.29766 0.00015992 -1.0532 -0.00056582 -0.75554 -0.00040591 537.2395051000789 61.444 0.40989 61.444 61.275 61.685 0 58 18 4 0 0 0 0.74163 1 34338 34338 13.508 4.1604 1 16140000 + 45279 27079 30105 30845 53232 53232 -0.06790190510901084 PFNKLLSL 8 Unmodified _PFNKLLSL_ 0 0 0 REV__nc|ENSG00000127463|Q8N766-4|EMC1 REV__nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2826232910156 2 466.284203 930.553853 NaN NaN NaN NaN NaN NaN NaN 55.416 1 55.347 54.847 55.847 -0.068737 0 0 0 0.69365 1 30116 30116 28.487 0.31361 1 + 45280 19582 30106 30846 53233 53233 0.08579849799582462 PFNLSQGKKR 10 Unmodified _PFNLSQGKKR_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MSMS AL20221201_MKP_PDAC_01 4 392.2290649414062 3 392.22789 1173.66184 NaN NaN NaN NaN NaN NaN NaN 45.257 1 40.302 39.802 40.802 -4.9549 0 0 0 0.87645 1 27749 27749 8.9762 5.0999 1 45281 1485 30107 30847 53234 53234 0.08195614382839267 PFNMRLQWA 9 Unmodified _PFNMRLQWA_ 0 0 0 REV__ENSG00000256537|ENST00000622602|SMIM10L1 REV__ENSG00000256537|ENST00000622602|SMIM10L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3331909179688 2 581.794943 1161.57533 1.115 0.0006487 4.1912 0.0024384 5.3062 0.0030871 581.7982566019781 68.892 0.25404 68.917 68.77 69.024 0.025146 16 11 2 0 0 0 0.20528 1 37806 37806 8.5933 1.304 1 1048100 + 45282 24555 30108 30848 53235 53235 0.00100911556637584 PFNPSFPSPF 10 Unmodified _PFNPSFPSPF_ 0 0 0 ENST00000392078.7_2_1:171454721-171454856:+|nuORF ENST00000392078.7_2_1:171454721-171454856:+|nuORF ENST00000392078.7_2_1:171454721-171454856:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.7340698242188 2 568.7742 1135.53385 0.6744 0.00038358 -3.0937 -0.0017596 -2.4193 -0.001376 569.2745424901509 55.858 0.091141 49.937 49.878 49.969 -5.9211 6 5 2 0 0 0 0.23227 1 35561 35561 10.824 4.6181 1 10950000 45283 12664 30109 30849 53236 53236 -0.02849945931052389 PFNPVTVNL 9 Unmodified _PFNPVTVNL_ 0 0 0 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7767333984375 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 72.278 1 72.32 71.82 72.82 0.041725 0 0 0 0.029091 1 39801 39801 67.344 16.489 1 45284 3825 30110 30850 53237 53237 0.03914357931569157 PFNSNKLLLM 10 Unmodified _PFNSNKLLLM_ 0 0 0 REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8244018554688 2 588.825909 1175.63727 0.36395 0.0002143 -2.3082 -0.0013591 -1.9442 -0.0011448 588.8244846951127 61.713 0.27666 61.681 61.551 61.828 -0.032787 18 13 2 0 0 0 0.50944 1 33708 33708 15.847 1.0089 1 4204300 + 45285 21691 30111 30851 53238 53238 0.05647218185094971 PFNVGWAL 8 Unmodified _PFNVGWAL_ 0 0 0 REV__ENSG00000112249|ENST00000369162|ASCC3 REV__ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.238525390625 2 452.239796 902.465038 NaN NaN NaN NaN NaN NaN NaN 53.942 1 53.942 53.442 54.442 0 0 0 0 0.9706 1 29925 29925 6.3541 0.59368 1 + 45286 18801 30112 30852 53239 53239 0.009904345599011322 PFPALQTL 8 Unmodified _PFPALQTL_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 888.5103149414062 1 886.503281 885.496004 -0.15847 -0.00014049 0.77779 0.00068952 0.61932 0.00054903 886.5043133903711 71.338 0.3634 70.86 70.682 71.045 -0.47735 31 15 3 0 0 0 0.80624 1 39041 39041 2.8892 0 1 1756900 45287 359 30113 30853 53240 53240 0.04867587874127821 PFPAWKAPL 9 Unmodified _PFPAWKAPL_ 0 0 0 ENST00000314412.6_1_9:139927278-139927425:-|nuORF ENST00000314412.6_1_9:139927278-139927425:-|nuORF ENST00000314412.6_1_9:139927278-139927425:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7894897460938 2 513.792195 1025.56984 -0.37302 -0.00019166 -3.2224 -0.0016556 -3.5954 -0.0018473 513.7900413854017 41.085 0.21325 41.085 41.005 41.218 0 16 10 2 0 0 0 0.37804 1 22150 22150 13.508 0.97634 1 2517600 45288 11725 30114 30854 53241 53241 0.05807556036438655 PFPDETHERY 10 Unmodified _PFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.86328125 3 430.863165 1289.56767 -0.17425 -7.5077E-05 -0.20124 -8.6706E-05 -0.37549 -0.00016178 430.8632587742583 41.808 0.22691 41.808 41.731 41.957 0 16 11 2 0 0 0 0.32323 1 22612 22612 26.121 18.644 1 3109600 45289 10010 30115 30855 53242 53242 -0.06553569229936329 PFPDETHERY 10 Unmodified _PFPDETHERY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000525308.1_1_8:145138262-145138586:+|nuORF;ENST00000532758.5_1_8:145137633-145138586:+|nuORF;ENST00000527144.5_1_8:145138126-145139470:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.8643798828125 3 430.863165 1289.56767 0.88667 0.00038203 -0.012117 -5.2208E-06 0.87455 0.00037681 430.8626935211948 47.154 0.032669 42.074 42.053 42.085 -5.0805 4 2 2 0 0 0 0.05292 1 29224 29224 57.204 34.429 1 11989000 45290 10010 30115 30855 53243 53243 -0.06553569229936329 PFPGSRGPS 9 Unmodified _PFPGSRGPS_ 0 0 0 ENST00000592481.5_1_17:75447336-75492345:+|nuORF ENST00000592481.5_1_17:75447336-75492345:+|nuORF ENST00000592481.5_1_17:75447336-75492345:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.230712890625 2 451.229959 900.445365 0.72369 0.00032655 0.84789 0.00038259 1.5716 0.00070915 451.2302901120519 60.63 0.51179 60.587 60.415 60.927 -0.04351 58 25 3 0 0 0 0.56345 1 33159 33159 3.5965 1.019 1 21340000 45291 15721 30116 30856 53244 53244 -0.008839414508543086 PFPHAAIL 8 Unmodified _PFPHAAIL_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2509765625 2 433.250163 864.485774 0.27931 0.00012101 0.38421 0.00016646 0.66351 0.00028747 433.25021039006134 93.409 0.56097 87.234 86.871 87.432 -6.1757 67 40 2 0 0 0 0.61999 1 61682 61682 24.21 24.21 1 22629000 45292 8046 30117 30857 53245 53245 0.048110249395676874 PFPLSLILPGR 11 Unmodified _PFPLSLILPGR_ 0 0 0 nc|ENSG00000177034|Q5HYI7-2|MTX3;nc|ENSG00000177034|Q5HYI7-4|MTX3;nc|ENSG00000177034|Q5HYI7-5|MTX3;ENSG00000177034|ENST00000512528|MTX3 nc|ENSG00000177034|Q5HYI7-2|MTX3 nc|ENSG00000177034|Q5HYI7-2|MTX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.9169006347656 3 403.916653 1208.72813 0.22231 8.9793E-05 1.8428 0.00074434 2.0651 0.00083413 403.9170057533827 36.975 0.2601 36.975 36.878 37.138 0 27 12 3 0 0 0 0.72981 1 19670 19670 1.4551 0.67859 1 2110900 45293 8648 30118 30858 53246 53246 0.13211430224873766 PFPLSLILPGR 11 Unmodified _PFPLSLILPGR_ 0 0 0 nc|ENSG00000177034|Q5HYI7-2|MTX3;nc|ENSG00000177034|Q5HYI7-4|MTX3;nc|ENSG00000177034|Q5HYI7-5|MTX3;ENSG00000177034|ENST00000512528|MTX3 nc|ENSG00000177034|Q5HYI7-2|MTX3 nc|ENSG00000177034|Q5HYI7-2|MTX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 403.916653 1208.72813 -0.11488 -4.6403E-05 3.863 0.0015603 3.7481 0.0015139 404.2531030707192 37.44 0.092094 37.169 37.114 37.206 -0.27133 0.0968 0.0023149 NaN 1.4551 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 413630 45294 8648 30118 30858 0.13211430224873766 PFPLVSLFF 9 Unmodified _PFPLVSLFF_ 0 0 0 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.8008422851562 2 533.802229 1065.5899 -0.30796 -0.00016439 -1.4074 -0.00075126 -1.7153 -0.00091565 533.8014254223184 34.067 0.51456 33.876 33.589 34.104 -0.19132 46 19 3 0 0 0 0.28047 1 17700 17700 18.135 5.6034 1 4046200 45295 1159 30119 30859 53247 53247 0.05973306976420645 PFPLVSLFF 9 Unmodified _PFPLVSLFF_ 0 0 0 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8006591796875 2 533.802229 1065.5899 0.9799 0.00052307 2.4935 0.0013311 3.4734 0.0018541 533.8038037497813 38.035 0.61416 33.666 33.286 33.9 -4.3689 95 36 4 0 0 0 0.052168 1 22187 22187 44.407 14.182 1 74297000 45296 1159 30119 30859 53248 53248 0.05973306976420645 PFPLVSLFF 9 Unmodified _PFPLVSLFF_ 0 0 0 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 ENSG00000075429|ENST00000533854|CACNG5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.802229 1065.5899 -0.37047 -0.00019776 0.96265 0.00051386 0.59218 0.0003161 533.8031616631853 33.923 0.1863 33.923 33.822 34.009 0 0.12847 -0.00084178 NaN 44.407 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2880000 45297 1159 30119 30859 0.05973306976420645 PFPLVSVS 8 Unmodified _PFPLVSVS_ 0 0 0 REV__ENST00000409185.5_1_2:131806791-131806905:-|nuORF REV__ENST00000409185.5_1_2:131806791-131806905:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2425231933594 2 423.242004 844.469455 0.032341 1.3688E-05 1.638 0.00069327 1.6704 0.00070696 423.24251113430546 34.979 0.91998 35.007 34.367 35.287 0.027401 61 42 2 0 0 0 0.61462 3 18494 18227;18387;18494 24.674 0 1 1314900 + 45298 26682 30120 30860 53249;53250;53251 53251 0.04099898982804007 PFPNQQLLF 9 Unmodified _PFPNQQLLF_ 0 0 0 REV__ENSG00000197557|ENST00000355689|TTC30A REV__ENSG00000197557|ENST00000355689|TTC30A MSMS AL20221201_MKP_PDAC_01 4 552.2998657226562 2 552.297842 1102.58113 NaN NaN NaN NaN NaN NaN NaN 100.91 1 94.731 94.231 95.231 -6.1757 0 0 0 0.20498 1 67597 67597 30.225 5.5509 1 + 45299 23857 30121 30861 53252 53252 0.033943333399292897 PFPPGNESF 9 Unmodified _PFPPGNESF_ 0 0 0 REV__ENSG00000128849|ENST00000281282|CGNL1 REV__ENSG00000128849|ENST00000281282|CGNL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2290344238281 2 496.229625 990.444697 NaN NaN NaN NaN NaN NaN NaN 62.407 1 62.407 61.907 62.907 0 0 0 0 0.70111 1 34807 34807 9.3474 2.9933 1 + 45300 19638 30122 30862 53253 53253 -0.05090780890566293 PFPPLPLQP 9 Unmodified _PFPPLPLQP_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2 ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2918395996094 2 503.292028 1004.5695 0.38625 0.0001944 0.37808 0.00019029 0.76434 0.00038468 503.2921254439295 49.858 0.21486 49.466 49.353 49.568 -0.3923 25 10 3 0 0 0 0.39863 1 26814 26814 12.532 12.532 1 10426000 45301 6536 30123 30863 53254 53254 0.06740136316614098 PFPPLPLQP 9 Unmodified _PFPPLPLQP_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2 ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2919311523438 2 503.292028 1004.5695 0.81563 0.0004105 -0.73482 -0.00036983 0.080819 4.0676E-05 503.29153959759043 49.507 0.33546 49.458 49.31 49.645 -0.048828 45 16 4 0 0 0 0.2143 1 26763 26763 21.747 3.6117 1 24582000 45302 6536 30123 30863 53255 53255 0.06740136316614098 PFPPSVQLL 9 Unmodified _PFPPSVQLL_ 0 0 0 REV__ENST00000546621.5_1_12:56667289-56669828:-|nuORF REV__ENST00000546621.5_1_12:56667289-56669828:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.2914123535156 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 80.893 1 74.717 74.217 75.217 -6.1757 0 0 0 0.33856 1 53077 53077 23.148 2.6948 1 + 45303 28661 30124 30864 53256 53256 0.06599832453991894 PFPRFSRELH 10 Unmodified _PFPRFSRELH_ 0 0 0 REV__ENST00000340381.10_1_1:9671892-9673254:+|nuORF REV__ENST00000340381.10_1_1:9671892-9673254:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 429.2335510253906 3 429.231523 1284.67274 NaN NaN NaN NaN NaN NaN NaN 51.854 1 46.119 45.619 46.619 -5.7345 0 0 0 0.78298 1 32669 32669 7.9454 0.46833 1 + 45304 25690 30125 30865 53257 53257 0.04179016757143472 PFPRLHFF 8 Unmodified _PFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3351440429688 2 530.789987 1059.56542 1.0314 0.00054745 -1.2964 -0.0006881 -0.26499 -0.00014066 530.7887776663734 98.514 0.2132 92.338 92.176 92.389 -6.1757 20 14 2 0 0 0 8.7369 1 65318 65318 56.541 36.088 1 28038000 45305 9643;9783;4920;10820;8557;8299 30126 30866 53258 53258 0.03802091613556513 PFPRLLPPAPS 11 Unmodified _PFPRLLPPAPS_ 0 0 0 REV__ENST00000325658.3_1_14:60716188-60717124:+|nuORF REV__ENST00000325658.3_1_14:60716188-60717124:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1192.08740234375 1 1191.68846 1190.68118 1.2725 0.0015164 -4.4264 -0.0052749 -3.154 -0.0037585 1192.6888014336662 91.171 0.1315 91.208 91.112 91.244 0.036499 6 4 2 0 0 0 0.29698 1 50684 50684 2.7352 0.23671 1 2736600 + 45306 25552 30127 30867 53259 53259 0.09346570673733368 PFPSLTAL 8 Unmodified _PFPSLTAL_ 0 0 0 REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8787536621094 2 423.242004 844.469455 0.032341 1.3688E-05 1.638 0.00069327 1.6704 0.00070696 423.24251113430546 34.979 0.91998 35.007 34.367 35.287 0.027401 61 42 2 0 0 0 8.7369 1 18180 18180 19.439 1.304 1 1314900 + 45307 27669 30128 30868 53260 53260 0.04099898982792638 PFPSLTAL 8 Unmodified _PFPSLTAL_ 0 0 0 REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF REV__ENST00000480273.5_1_20:62319266-62327135:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2435913085938 2 423.242004 844.469455 NaN NaN NaN NaN NaN NaN NaN 39.074 1 34.624 34.124 35.124 -4.4509 0 0 0 0.88073 1 23138 23138 19.439 1.304 1 + 45308 27669 30128 30868 53261 53261 0.04099898982792638 PFPSNITLM 9 Unmodified _PFPSNITLM_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2631530761719 2 510.265153 1018.51575 0.68877 0.00035146 -0.10154 -5.1811E-05 0.58723 0.00029964 510.26514902337635 39.266 0.65301 34.815 34.361 35.014 -4.4509 81 40 3 0 0 0 0.12424 1 23122 23122 30.637 2.1497 1 37540000 45309 4151 30129 30869 53262 53262 0.007235958225805916 PFPSSSSFCSC 11 Unmodified _PFPSSSSFCSC_ 0 0 0 REV__nc|ENSG00000106078|O75128-4|COBL REV__nc|ENSG00000106078|O75128-4|COBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7227172851562 2 574.722992 1147.43143 0.31269 0.00017971 0.089332 5.1341E-05 0.40202 0.00023105 574.7228178147278 43.416 0.52065 43.416 43.084 43.605 0 45 25 2 0 0 0 0.54936 1 23479 23479 13.906 7.7003 1 4112800 + 45310 29554 30130 30870 53263 53263 -0.13638723056465096 PFPVPHGP 8 Unmodified _PFPVPHGP_ 0 0 0 ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.72802734375 2 424.226688 846.438824 0.27848 0.00011814 0.095867 4.0669E-05 0.37434 0.00015881 424.22676161271767 41.056 0.23962 40.753 40.601 40.841 -0.30304 27 11 3 0 0 0 0.5245 1 21691 21691 32.454 19.922 1 6249900 45311 13003 30131 30871 53264 53264 0.009461653884272891 PFPVPHGP 8 Unmodified _PFPVPHGP_ 0 0 0 ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2270202636719 2 424.226688 846.438824 0.44315 0.000188 -0.43508 -0.00018457 0.0080705 3.4237E-06 424.2264272450904 40.694 0.38906 40.699 40.509 40.898 0.0050583 57 18 4 0 0 0 0.42709 2 21668 21668;21775 41.817 24.731 1 130350000 45312 13003 30131 30871 53265;53266 53265 0.009461653884272891 PFPVPHGP 8 Unmodified _PFPVPHGP_ 0 0 0 ENST00000413800.5_1_7:99764329-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF ENST00000413800.5_1_7:99764329-99764836:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2270202636719 2 424.226688 846.438824 0.84074 0.00035667 -0.062273 -2.6418E-05 0.77847 0.00033025 424.226629441091 44.618 0.67587 39.766 39.439 40.115 -4.852 145 51 4 0 0 0 0.42709 3 27083 27083;27211;27336 41.817 24.731 1 190940000 45313 13003 30131 30871 53267;53268;53269 53267 0.009461653884272891 PFQFLCSYRSL 11 Unmodified _PFQFLCSYRSL_ 0 0 0 REV__ENST00000576772.1_1_17:5094760-5094913:-|nuORF REV__ENST00000576772.1_1_17:5094760-5094913:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 681.3406982421875 2 680.839548 1359.66454 0.57386 0.0003907 -0.30377 -0.00020682 0.27009 0.00018389 680.8392870180443 72.414 0.3299 71.938 71.772 72.102 -0.47609 35 15 3 0 0 0 0.71036 1 39685 39685 3.2813 0 1 3362900 + 45314 29025 30132 30872 53270 53270 -0.0009029827451740857 PFQGAVTPWP 10 Unmodified _PFQGAVTPWP_ 0 0 0 REV__nc|ENSG00000173406|O75553-3|DAB1 REV__nc|ENSG00000173406|O75553-3|DAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2817993164062 2 550.282192 1098.54983 0.30435 0.00016748 -0.68843 -0.00037883 -0.38408 -0.00021135 550.281745765391 62.164 0.33253 62.131 61.888 62.22 -0.032787 28 16 2 0 0 0 0.38092 1 33894 33894 22.736 3.4793 1 9084100 + 45315 22728 30133 30873 53271 53271 0.004497603058553068 PFQIGTTPL 9 Unmodified _PFQIGTTPL_ 0 0 0 ENST00000480022.1_1_20:40043429-40043612:-|nuORF ENST00000480022.1_1_20:40043429-40043612:-|nuORF ENST00000480022.1_1_20:40043429-40043612:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2710876464844 2 487.271293 972.528032 NaN NaN NaN NaN NaN NaN NaN 71.436 1 70.959 70.459 71.459 -0.47735 0 0 0 0.7453 1 39098 39098 7.9102 0 1 45316 14052 30134 30874 53272 53272 0.04066955557277652 PFRCENCDERF 11 Unmodified _PFRCENCDERF_ 0 0 0 ENSG00000198740|ENST00000430262|ZNF652 ENSG00000198740|ENST00000430262|ZNF652 ENSG00000198740|ENST00000430262|ZNF652 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.5299682617188 3 472.532544 1414.5758 NaN NaN NaN NaN NaN NaN NaN 19.661 1 19.661 19.161 20.161 0 0 0 0 0.94307 1 9847 9847 0.08335 0 1 45317 10138 30135 30875 53273 53273 -0.11490081576516786 PFREARKR 8 Unmodified _PFREARKR_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.796142578125 2 530.312149 1058.60975 2.2653 0.0012013 0.089794 4.7619E-05 2.3551 0.0012489 530.3119272925892 100.07 0.14014 100.03 99.905 100.05 -0.036308 6 4 2 0 0 0 8.7369 1 55586 55586 9.3474 4.1168 1 641400 45318 16194 30136 30876 53274 53274 0.0827849575973687 PFREYELW 8 Unmodified _PFREYELW_ 0 0 0 ENSG00000171798|ENST00000304613|KNDC1;nc|ENSG00000171798|Q76NI1-4|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 ENSG00000171798|ENST00000304613|KNDC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8351440429688 2 570.279649 1138.54475 0.47378 0.00027019 1.5706 0.0008957 2.0444 0.0011659 570.2794958457594 67.256 0.23278 67.274 67.161 67.394 0.018036 26 11 3 0 0 0 8.7369 1 36971 36971 8.5933 0 1 3102700 45319 8142 30137 30877 53275 53275 -0.018985435567628883 PFRKHLRY 8 Unmodified _PFRKHLRY_ 0 0 0 REV__nc|ENSG00000173320|Q9P2F5-2|STOX2 REV__nc|ENSG00000173320|Q9P2F5-2|STOX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2882080078125 2 558.824892 1115.63523 0.88441 0.00049423 2.3945 0.0013381 3.2789 0.0018323 558.8259936867 67.107 0.29679 67.125 66.961 67.258 0.018028 25 14 2 0 0 0 8.7369 1 36908 36908 6.3541 0 1 3162500 + 45320 22722 30138 30878 53276 53276 0.08203970282170303 PFRKMLRMT 9 Unmodified _PFRKMLRMT_ 0 0 0 ENST00000299237.2_1_16:58033568-58033697:-|nuORF ENST00000299237.2_1_16:58033568-58033697:-|nuORF ENST00000299237.2_1_16:58033568-58033697:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.8712463378906 3 393.887823 1178.64164 1.329 0.00052349 -1.2474 -0.00049132 0.081674 3.217E-05 394.2215611336945 50.427 0.14002 44.887 44.76 44.9 -5.5391 12 8 2 0 0 0 0.21404 1 31542 31542 2.7352 0.64919 1 4840700 45321 11542 30139 30879 53277 53277 0.059464041270302914 PFRNKVTF 8 Unmodified _PFRNKVTF_ 0 0 0 nc|ENSG00000056558|Q13077-2|TRAF1;ENSG00000056558|ENST00000373887|TRAF1 nc|ENSG00000056558|Q13077-2|TRAF1 nc|ENSG00000056558|Q13077-2|TRAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.288818359375 2 504.784902 1007.55525 1.0569 0.00053351 -0.86357 -0.00043592 0.19334 9.7594E-05 504.7840888734565 81.233 0.56967 75.058 74.808 75.378 -6.1757 76 32 3 0 0 0 0.71616 1 53510 53510 15.768 5.5848 1 40109000 45322 785 30140 30880 53278 53278 0.05177483888326151 PFRQKLPNSCP 11 Unmodified _PFRQKLPNSCP_ 0 0 0 ENST00000371646.9_1_6:44214858-44216493:+|nuORF ENST00000371646.9_1_6:44214858-44216493:+|nuORF ENST00000371646.9_1_6:44214858-44216493:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8378295898438 2 643.837339 1285.66013 NaN NaN NaN NaN NaN NaN NaN 103.14 1 103.04 102.54 103.54 -0.10458 0 0 0 0.94337 1 56263 56263 0 0 1 45323 12363 30141 30881 53279 53279 0.02872237302585745 PFRSFLGRRRR 11 Unmodified _PFRSFLGRRRR_ 0 0 0 ENST00000372070.7_1_1:46016515-46016749:+|nuORF ENST00000372070.7_1_1:46016515-46016749:+|nuORF ENST00000372070.7_1_1:46016515-46016749:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2883605957031 3 483.288366 1446.84327 0.23201 0.00011213 0.22281 0.00010768 0.45482 0.00021981 483.28843987033923 14.827 0.094263 12.3 12.261 12.355 -2.5273 21 16 2 0 0 0 0.74096 1 7562 7562 0.40827 0.40827 1 2057500 45324 12373 30142 30882 53280 53280 0.13771972199242555 PFRSFWQQRQF 11 Unmodified _PFRSFWQQRQF_ 0 0 0 nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1 nc|ENSG00000089250|P29475-3|NOS1 nc|ENSG00000089250|P29475-3|NOS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.5928955078125 3 509.593232 1525.75787 NaN NaN NaN NaN NaN NaN NaN 49.137 1 49.093 48.593 49.593 -0.04369 0 0 0 0.94037 1 26540 26540 2.2527 0 1 45325 1526 30143 30883 53281 53281 0.016017622229355766 PFRYQWPWE 9 Unmodified _PFRYQWPWE_ 0 0 0 REV__ENST00000590339.5_1_17:40925499-40925547:+|nuORF REV__ENST00000590339.5_1_17:40925499-40925547:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8776550292969 3 436.876857 1307.60874 NaN NaN NaN NaN NaN NaN NaN 103.92 1 103.92 103.42 104.42 0 0 0 0 0.85798 1 57249 57249 0.23584 0.095952 1 + 45326 19795 30144 30884 53282 53282 -0.0327576339980169 PFSGKSFYL 9 Unmodified _PFSGKSFYL_ 0 0 0 DBF4B|p.L57M|1|0.18|ENSG00000161692|chr17:44722966-44722966|C/A|missense_variant;ENST00000526915.5_1_17:42786185-42811460:+|nuORF;nc|ENSG00000161692|Q8NFT6-4|DBF4B;ENST00000528766.5_1_17:42786185-42808425:+|nuORF;nc|ENSG00000161692|Q8NFT6-2|DBF4B;ENSG00000161692|ENST00000315005|DBF4B DBF4B|p.L57M|1|0.18|ENSG00000161692|chr17:44722966-44722966|C/A|missense_variant DBF4B|p.L57M|1|0.18|ENSG00000161692|chr17:44722966-44722966|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.271484375 2 523.271293 1044.52803 1.1395 0.00059628 -0.41044 -0.00021477 0.72908 0.00038151 523.2711824971456 61.197 0.78761 55.049 54.778 55.565 -6.1478 86 40 4 0 0 0 0.15471 2 39341 39341;39606 27.629 0 1 174330000 45327 226 30145 30885 53283;53284 53283 0.007549555572722966 PFSGLQKA 8 Unmodified _PFSGLQKA_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2370910644531 2 424.237253 846.459953 -0.17549 -7.445E-05 -0.38022 -0.0001613 -0.55571 -0.00023575 424.2370851605522 31.206 0.23684 31.237 31.109 31.346 0.030106 20 9 3 0 0 0 0.55032 1 16359 16359 30.225 3.3412 1 4528700 45328 4968 30146 30886 53285 53285 0.030581306972862876 PFSGLQKA 8 Unmodified _PFSGLQKA_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 424.237253 846.459953 0.15364 6.518E-05 0.0022613 9.5931E-07 0.1559 6.6139E-05 424.23718472048944 31.417 0.32382 31.417 31.276 31.6 0 0.098016 1.1597E-06 NaN 30.225 35 15 3 NaN NaN NaN NaN 0 NaN NaN 0 7708400 45329 4968 30146 30886 0.030581306972862876 PFSGLQKA 8 Unmodified _PFSGLQKA_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 424.237253 846.459953 0.20808 8.8274E-05 0.39827 0.00016896 0.60635 0.00025723 424.2374125889864 31.407 0.27305 31.304 31.161 31.434 -0.10269 -0.015133 0.00033716 NaN 30.225 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 15587000 45330 4968 30146 30886 0.030581306972862876 PFSGLQKA 8 Unmodified _PFSGLQKA_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 424.237253 846.459953 -0.17549 -7.445E-05 -0.38022 -0.0001613 -0.55571 -0.00023575 424.2370851605522 31.206 0.23684 31.237 31.109 31.346 0.030106 -0.082883 -0.00032337 NaN 30.225 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4528700 45331 4968 30146 30886 0.030581306972862876 PFSHVNIVKF 10 Unmodified _PFSHVNIVKF_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8921508789062 3 396.557236 1186.64988 0.2988 0.00011849 0.28214 0.00011188 0.58094 0.00023037 396.55734913317986 47.991 0.29338 47.953 47.849 48.142 -0.038643 28 14 3 0 0 0 0.66569 1 25887 25887 6.1918 0.78914 1 2794900 45332 4010 30147 30887 53286 53286 0.06401997639659385 PFSIPGIGP 9 Unmodified _PFSIPGIGP_ 0 0 0 REV__ENSG00000197912|ENST00000645818|SPG7 REV__ENSG00000197912|ENST00000645818|SPG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.4879150390625 1 884.48763 883.480354 -0.62939 -0.00055669 1.488 0.0013161 0.85864 0.00075946 884.4890814046855 69.333 0.53065 68.853 68.628 69.158 -0.47961 32 22 2 0 0 0 0.58865 1 38052 38052 2.0598 0 1 953450 + 45333 23968 30148 30888 53287 53287 0.033953013571021984 PFSKEEKT 8 Unmodified _PFSKEEKT_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 967.5001831054688 1 965.493838 964.486562 0.23553 0.0002274 -0.29212 -0.00028204 -0.056597 -5.4644E-05 965.4934017619623 53.997 0.67108 53.53 53.19 53.861 -0.46664 79 33 3 0 0 0 0.80143 1 29318 29318 5.7604 0 1 7907800 45334 7559 30149 30889 53288 53288 0.002897747979545784 PFSKPAKL 8 Unmodified _PFSKPAKL_ 0 0 0 REV__ENSG00000119285|ENST00000366582|HEATR1 REV__ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2715759277344 2 444.271096 886.527639 0.63093 0.00028031 0.11054 4.911E-05 0.74147 0.00032942 444.27104360628664 73.988 0.34889 74.032 73.884 74.233 0.043983 22 15 2 0 0 0 0.79783 1 40809 40809 7.9102 0 1 1366600 + 45335 19186 30150 30890 53289 53289 0.079835806280812 PFSKPVKV 8 Unmodified _PFSKPVKV_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2790222167969 2 451.278921 900.543289 0.67399 0.00030416 -0.57439 -0.00025921 0.099597 4.4946E-05 451.27851785076405 48.768 0.219 48.724 48.591 48.81 -0.04369 17 10 2 0 0 0 0.46468 1 26320 26320 38.176 4.0731 1 3444200 45336 5997 30151 30891 53290 53290 0.08903867145136246 PFSLAPTEGL 10 Unmodified _PFSLAPTEGL_ 0 0 0 REV__ENST00000303965.8_1_4:36231264-36245875:-|nuORF REV__ENST00000303965.8_1_4:36231264-36245875:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.789306640625 2 516.274032 1030.53351 NaN NaN NaN NaN NaN NaN NaN 59.353 1 59.3 58.8 59.8 -0.053062 0 0 0 0.83398 1 32343 32343 10.824 1.4765 1 + 45337 25353 30152 30892 53291 53291 0.019466343491103544 PFSLLAPG 8 Unmodified _PFSLLAPG_ 0 0 0 ENST00000512983.5_1_4:156617950-156632415:+|nuORF;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENSG00000164116|ENST00000506455|GUCY1A1 ENST00000512983.5_1_4:156617950-156632415:+|nuORF ENST00000512983.5_1_4:156617950-156632415:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 801.4503784179688 1 801.450517 800.44324 0.57053 0.00045726 0.63819 0.00051148 1.2087 0.00096873 801.4509258714747 80.064 0.28046 79.575 79.454 79.734 -0.48932 15 10 2 0 0 0 0.64035 1 43840 43840 22.453 6.6844 1 786680 45338 7143 30153 30893 53292 53292 0.035036298113254816 PFSLLAPG 8 Unmodified _PFSLLAPG_ 0 0 0 ENST00000512983.5_1_4:156617950-156632415:+|nuORF;nc|ENSG00000164116|Q02108-2|GUCY1A1;ENSG00000164116|ENST00000506455|GUCY1A1 ENST00000512983.5_1_4:156617950-156632415:+|nuORF ENST00000512983.5_1_4:156617950-156632415:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 801.450517 800.44324 0.43035 0.0003449 0.14374 0.0001152 0.57408 0.0004601 801.4505062643624 79.477 0.22755 79.532 79.445 79.672 0.054977 -0.021305 -0.00032472 NaN 22.453 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1735300 45339 7143 30153 30893 0.035036298113254816 PFSNRHSWF 9 Unmodified _PFSNRHSWF_ 0 0 0 REV__ENST00000254250.7_1_8:42693388-42694372:-|nuORF REV__ENST00000254250.7_1_8:42693388-42694372:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.783447265625 2 589.280515 1176.54648 0.35355 0.00020834 -1.6751 -0.0009871 -1.3215 -0.00077875 589.2798015789028 76.009 0.32545 75.529 75.414 75.74 -0.47945 22 13 2 0 0 0 0.18118 1 41621 41621 12.532 0 1 2178600 + 45340 24902 30154 30894 53293 53293 -0.03473489748148495 PFSSCHQET 9 Unmodified _PFSSCHQET_ 0 0 0 REV__ENSG00000183354|ENST00000399933|KIAA2026 REV__ENSG00000183354|ENST00000399933|KIAA2026 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.212890625 2 518.213649 1034.41274 NaN NaN NaN NaN NaN NaN NaN 17.639 1 17.653 17.153 18.153 0.013865 0 0 0 0.84737 1 8787 8787 1.8442 0 1 + 45341 23342 30155 30895 53294 53294 -0.10308516636018794 PFSSGPPWGT 10 Unmodified _PFSSGPPWGT_ 0 0 0 ENST00000586923.1_1_19:55741285-55741525:-|nuORF ENST00000586923.1_1_19:55741285-55741525:-|nuORF ENST00000586923.1_1_19:55741285-55741525:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.219970703125 2 516.742899 1031.47125 0.70116 0.00036232 1.7676 0.00091341 2.4688 0.0012757 516.7443422283296 36.744 0.2708 36.744 36.566 36.837 0 20 12 2 0 0 0 0.23227 1 19464 19464 10.824 0.75 1 1115300 45342 15629 30156 30896 53295 53295 -0.0432309199923111 PFSTSSPPPPY 11 Unmodified _PFSTSSPPPPY_ 0 0 0 ENST00000348370.8_1_15:59359032-59359191:+|nuORF ENST00000348370.8_1_15:59359032-59359191:+|nuORF ENST00000348370.8_1_15:59359032-59359191:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7855224609375 2 588.782222 1175.54989 0.01117 6.5769E-06 -1.0753 -0.00063314 -1.0642 -0.00062657 588.7817312707645 76.512 0.51125 76.032 75.684 76.195 -0.47945 44 29 2 0 0 0 0.63851 1 41726 41726 9.3831 2.0939 1 4408500 45343 12040 30157 30897 53296 53296 -0.030862844848115856 PFSYSASTLLQ 11 Unmodified _PFSYSASTLLQ_ 0 0 0 REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3058471679688 2 607.308603 1212.60265 NaN NaN NaN NaN NaN NaN NaN 101.56 1 101.52 101.02 102.02 -0.043671 0 0 0 0.76159 1 56424 56424 13.906 2.2658 1 + 45344 24829 30158 30898 53297 53297 0.004856735780094823 PFTALCPA 8 Unmodified _PFTALCPA_ 0 0 0 REV__ENST00000456143.1_22:16404699-16405137:+|nuORF REV__ENST00000456143.1_22:16404699-16405137:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.209228515625 2 410.207107 818.399661 NaN NaN NaN NaN NaN NaN NaN 25.907 1 22.956 22.456 23.456 -2.9511 0 0 0 0.9249 1 14219 14219 15.768 1.8622 1 + 45345 27250 30159 30899 53298 53298 -0.016803029574589345 PFTDGTEWP 9 Unmodified _PFTDGTEWP_ 0 0 0 REV__ENSG00000161031|ENST00000340880|PGLYRP2 REV__ENSG00000161031|ENST00000340880|PGLYRP2 MSMS AL20221201_MKP_PDAC_01 4 525.2330932617188 2 525.232364 1048.45018 NaN NaN NaN NaN NaN NaN NaN 73.61 1 67.434 66.934 67.934 -6.1757 0 0 0 0.43505 1 48134 48134 18.135 4.6271 1 + 45346 21581 30160 30900 53299 53299 -0.07211102098744959 PFTDQIFHF 9 Unmodified _PFTDQIFHF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3251342773438 2 576.279649 1150.54475 0.29776 0.00017159 1.3972 0.00080521 1.695 0.0009768 576.7821305124895 79.934 0.18922 79.992 79.905 80.094 0.057587 13 7 2 0 0 0 0.16785 1 44229 44229 23.148 13.765 1 1687900 45347 402 30161 30901 53300 53300 -0.024505435567562017 PFTENCSLK 9 Unmodified _PFTENCSLK_ 0 0 0 REV__ENSG00000111837|ENST00000354489|MAK REV__ENSG00000111837|ENST00000354489|MAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7523193359375 2 519.749867 1037.48518 0.67121 0.00034886 -1.3753 -0.00071483 -0.70412 -0.00036597 519.7493911869695 59.893 0.94485 59.893 59.4 60.345 0 152 42 6 0 0 0 0.30562 1 33196 33196 16.942 1.0951 1 119810000 + 45348 18771 30162 30902 53301 53301 -0.03206182562462345 PFTEVNEPNYI 11 Unmodified _PFTEVNEPNYI_ 0 0 0 REV__ENSG00000183977|ENST00000389050|PP2D1 REV__ENSG00000183977|ENST00000389050|PP2D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.313720703125 2 661.816793 1321.61903 0.86019 0.00056929 -3.4353 -0.0022735 -2.5751 -0.0017043 661.814828102618 95.38 0.31291 89.204 88.969 89.282 -6.1757 22 17 2 0 0 0 0.5229 1 63077 63077 15.248 5.1746 1 8881400 + 45349 23390 30163 30903 53302 53302 -0.028912452558870427 PFTKREKIEKA 11 Unmodified _PFTKREKIEKA_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MSMS AL20221201_MKP_PDAC_01 4 449.5978698730469 3 449.597871 1345.77178 NaN NaN NaN NaN NaN NaN NaN 105.04 1 98.862 98.362 99.362 -6.1757 0 0 0 0.94082 1 70333 70333 1.9275 0 1 45350 3355 30164 30904 53303 53303 0.11272994931391622 PFTRKSKY 8 Unmodified _PFTRKSKY_ 0 0 0 ENST00000562408.1_1_16:28128533-28137161:-|nuORF ENST00000562408.1_1_16:28128533-28137161:-|nuORF ENST00000562408.1_1_16:28128533-28137161:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7916870117188 2 513.790184 1025.56581 0.62686 0.00032207 1.1806 0.00060659 1.8075 0.00092867 513.7906511404611 40.261 0.23403 40.266 40.19 40.424 0.0050545 22 10 3 0 0 0 0.80143 1 21474 21474 5.7604 1.0044 1 4204500 45351 15340 30165 30905 53304 53304 0.05405466542742943 PFTSGGFLYI 10 Unmodified _PFTSGGFLYI_ 0 0 0 ENST00000527829.1_1_11:47435993-47436711:+|nuORF;nc|ENSG00000165915|Q96H72-2|SLC39A13;ENST00000524886.1_1_11:47436414-47436911:+|nuORF;ENST00000524928.1_1_11:47436156-47436711:+|nuORF;ENSG00000165915|ENST00000362021|SLC39A13 ENST00000527829.1_1_11:47435993-47436711:+|nuORF ENST00000527829.1_1_11:47435993-47436711:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.284423828125 2 551.2844 1100.55425 0.42152 0.00023238 -1.8902 -0.001042 -1.4686 -0.00080964 551.2833554719554 89.824 0.13636 89.866 89.803 89.94 0.042183 7 4 2 0 0 0 0.38225 1 49983 49983 34.102 3.8776 1 3082500 45352 14843 30166 30906 53305 53305 0.007992247287575083 PFVCSHNRG 9 Unmodified _PFVCSHNRG_ 0 0 0 REV__ENST00000559934.5_1_15:78834413-78834578:+|nuORF REV__ENST00000559934.5_1_15:78834413-78834578:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.786865234375 2 508.740168 1015.46578 0.18478 9.4005E-05 -0.2674 -0.00013604 -0.082618 -4.2031E-05 508.7399191686705 88.396 0.32032 87.892 87.725 88.046 -0.50423 30 14 3 0 0 0 0.21367 1 48391 48391 4.756 0.42677 1 1176800 + 45353 28821 30167 30907 53306 53306 -0.041330940626949086 PFVCTECGME 10 Unmodified _PFVCTECGME_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.765380859375 2 558.213946 1114.41334 -0.34057 -0.00019011 -0.76337 -0.00042613 -1.1039 -0.00061623 558.7149843451099 30.079 0.47586 30.079 29.867 30.343 0 47 22 3 0 0 0 0.23862 1 15702 15702 3.9444 0 1 2533600 45354 5251 30168 30908 53307 53307 -0.13929181302842153 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7764892578125 2 554.776742 1107.53893 0.27749 0.00015395 -0.59074 -0.00032773 -0.31325 -0.00017378 554.7762504222896 76.445 0.53172 75.966 75.617 76.149 -0.47945 73 29 3 0 0 0 0.011671 2 41917 41815;41917 92.822 72.369 1 20178000 45355 2970 30169 30909 53308;53309 53309 -0.010536420684275072 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7774047851562 2 554.776742 1107.53893 0.34911 0.00019368 0.15665 8.6904E-05 0.50576 0.00028058 554.7767640933613 75.922 0.43259 75.97 75.75 76.182 0.047943 73 18 5 0 0 0 0.012668 2 41815 41815;41931 81.613 53.126 1 170450000 45356 2970 30169 30909 53310;53311 53310 -0.010536420684275072 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7784423828125 2 554.776742 1107.53893 1.2263 0.00068033 -0.041085 -2.2793E-05 1.1852 0.00065754 554.7767526221821 94.51 0.81021 88.334 87.993 88.803 -6.1757 126 46 3 0 0 0 0.0074135 4 62428 62428;62550;62667;62789 125.62 97.996 1 394060000 45357 2970 30169 30909 53312;53313;53314;53315 53312 -0.010536420684275072 PFVDHVFTF 9 Unmodified _PFVDHVFTF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 554.776742 1107.53893 0.89067 0.00049412 -2.8481 -0.0015801 -1.9575 -0.001086 555.2777482602179 81.834 0.19494 75.658 75.55 75.745 -6.1757 -0.20642 -0.0030631 NaN 74.423 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 9752100 45358 2970 30169 30909 -0.010536420684275072 PFVEKEGNK 9 Unmodified _PFVEKEGNK_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2771606445312 2 524.277106 1046.53966 0.12161 6.3759E-05 -0.053371 -2.7981E-05 0.068242 3.5778E-05 524.2769612586729 45.176 0.47139 45.176 44.925 45.396 0 76 24 4 0 0 0 0.094149 3 24696 24491;24592;24696 34.402 3.1334 1 50616000 + 45359 21346 30170 30910 53316;53317;53318 53318 0.01825152580613576 PFVEKEGNK 9 Unmodified _PFVEKEGNK_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.276611328125 2 524.277106 1046.53966 1.0655 0.00055862 -0.14131 -7.4085E-05 0.92419 0.00048453 524.2766888985847 51.064 0.50241 45.415 45.154 45.656 -5.649 78 30 3 0 0 0 0.15471 2 32001 32001;32135 27.629 2.175 1 138880000 + 45360 21346 30170 30910 53319;53320 53319 0.01825152580613576 PFVEKEGNK 9 Unmodified _PFVEKEGNK_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689 REV__ENSG00000156853|ENST00000287461|ZNF689 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.277106 1046.53966 0.12161 6.3759E-05 -0.053371 -2.7981E-05 0.068242 3.5778E-05 524.2769612586729 45.176 0.47139 45.176 44.925 45.396 0 -0.11942 4.1286E-05 NaN 34.402 76 24 4 NaN NaN NaN NaN 0 NaN NaN 0 50616000 + 45361 21346 30170 30910 0.01825152580613576 PFVETGISVMV 11 Unmodified _PFVETGISVMV_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8108520507812 2 589.809925 1177.6053 0.86017 0.00050734 -1.3478 -0.00079495 -0.48762 -0.00028761 590.3104347703738 91.004 0.97501 84.828 84.46 85.435 -6.1757 169 56 4 0 0 0 0.018218 1 60327 60327 74.929 0 1 44720000 45362 2325;6792;9151 30171 30911 53321 53321 0.02359805711307672 PFVGAIMGVCF 11 Unmodified _PFVGAIMGVCF_ 0 0 0 REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF REV__ENST00000437205.5_1_3:183639090-183689734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.78271484375 2 570.782656 1139.55076 0.00063683 3.6349E-07 0.33383 0.00019054 0.33446 0.00019091 570.7827454324321 37.336 0.66603 37.065 36.774 37.44 -0.27133 53 27 4 0 0 0 0.67371 1 19723 19723 6.7232 1.4925 1 2553300 + 45363 18932 30172 30912 53322 53322 -0.013434846411200851 PFVGGGGG 8 Unmodified _PFVGGGGG_ 0 0 0 ENST00000441006.5_1_22:17517965-17528257:+|nuORF ENST00000441006.5_1_22:17517965-17528257:+|nuORF ENST00000441006.5_1_22:17517965-17528257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.31298828125 1 647.314751 646.307475 0.39105 0.00025313 -0.54635 -0.00035366 -0.15531 -0.00010053 647.3142698542908 75.832 0.35902 75.88 75.727 76.086 0.047943 34 15 3 0 0 0 0.80044 1 41940 41940 6.3541 5.5605 1 13995000 45364 13390 30173 30913 53323 53323 -0.029826449794654764 PFVHCLPT 8 Unmodified _PFVHCLPT_ 0 0 0 REV__ENST00000450873.6_2_7:66205752-66233907:+|nuORF REV__ENST00000450873.6_2_7:66205752-66233907:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2320861816406 2 457.233656 912.452759 NaN NaN NaN NaN NaN NaN NaN 27.127 1 27.155 26.655 27.655 0.028664 0 0 0 0.94749 1 14092 14092 11.114 4.7604 1 + 45365 27204 30174 30914 53324 53324 -0.006969251747932503 PFVHELHLS 9 Unmodified _PFVHELHLS_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656349-34659376:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.3157958984375 2 539.787641 1077.56073 0.90688 0.00048952 0.52597 0.00028391 1.4328 0.00077343 539.7869548448174 92.146 0.16301 85.97 85.906 86.069 -6.1757 13 9 2 0 0 0 0.1474 1 60996 60996 15.847 0 1 4979200 45366 8595 30175 30915 53325 53325 0.025051626801541715 PFVHHNLA 8 Unmodified _PFVHHNLA_ 0 0 0 REV__ENSG00000089723|ENST00000203664|OTUB2 REV__ENSG00000089723|ENST00000203664|OTUB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.748291015625 2 467.748319 933.482085 0.35673 0.00016686 0.99959 0.00046756 1.3563 0.00063442 467.7486196029952 40.249 0.30997 39.952 39.804 40.114 -0.29716 32 14 3 0 0 0 0.67481 1 21251 21251 19.439 1.304 1 5801700 + 45367 17845 30176 30916 53326 53326 0.012683551657119096 PFVHHNLA 8 Unmodified _PFVHHNLA_ 0 0 0 REV__ENSG00000089723|ENST00000203664|OTUB2 REV__ENSG00000089723|ENST00000203664|OTUB2 MSMS AL20221201_MKP_PDAC_01 4 467.7481079101562 2 467.748319 933.482085 NaN NaN NaN NaN NaN NaN NaN 43.242 1 38.477 37.977 38.977 -4.7648 0 0 0 0.88073 1 26243 26243 19.439 1.304 1 + 45368 17845 30176 30916 53327 53327 0.012683551657119096 PFVHHNLA 8 Unmodified _PFVHHNLA_ 0 0 0 REV__ENSG00000089723|ENST00000203664|OTUB2 REV__ENSG00000089723|ENST00000203664|OTUB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 467.748319 933.482085 0.35673 0.00016686 0.99959 0.00046756 1.3563 0.00063442 467.7486196029952 40.249 0.30997 39.952 39.804 40.114 -0.29716 0 0 NaN 19.439 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5801700 + 45369 17845 30176 30916 0.012683551657119096 PFVKLSLDDF 10 Unmodified _PFVKLSLDDF_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.215087890625 3 394.213135 1179.61758 NaN NaN NaN NaN NaN NaN NaN 42.709 1 42.709 42.209 43.209 0 0 0 0 0.96981 1 23139 23139 1.9064 0.1641 1 45370 3093 30177 30917 53328 53328 0.034951654459973724 PFVPPPPA 8 Unmodified _PFVPPPPA_ 0 0 0 ENSG00000004848|ENST00000379044|ARX ENSG00000004848|ENST00000379044|ARX ENSG00000004848|ENST00000379044|ARX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.4566650390625 1 821.455602 820.448326 1.2722 0.001045 -0.55397 -0.00045506 0.71821 0.00058998 821.4550360548072 70.804 0.32092 70.839 70.658 70.979 0.035515 27 14 2 0 0 0 0.5245 2 38902 38902;39002 32.454 0 1 6958300 45371 287 30178 30918 53329;53330 53329 0.030919336739430037 PFVTEELFQ 9 Unmodified _PFVTEELFQ_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7805786132812 2 555.279315 1108.54408 0.47566 0.00026412 0.65837 0.00036558 1.134 0.0006297 555.2798610097458 94.84 0.24548 94.84 94.716 94.961 0 34 25 2 0 0 0 0.59218 1 52390 52390 1.8442 0 1 349740 45372 10278 30179 30919 53331 53331 -0.005853829964962642 PFVTKPSG 8 Unmodified _PFVTKPSG_ 0 0 0 REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 835.466796875 1 832.45633 831.449054 0.20208 0.00016822 1.1382 0.00094748 1.3402 0.0011157 832.4571872158366 64.273 0.48204 63.788 63.532 64.014 -0.48512 68 22 4 0 0 0 0.80232 1 35011 35011 5.2307 0 1 27089000 + 45373 18520 30180 30920 53332 53332 0.02658728323001469 PFVYGGLASI 10 Unmodified _PFVYGGLASI_ 0 0 0 ENSG00000174032|ENST00000519676|SLC25A30;ENST00000478474.5_1_X:129479185-129483241:+|nuORF;ENST00000467346.1_1_X:129479185-129483345:+|nuORF;ENST00000495156.5_1_X:129473893-129498660:+|nuORF;ENST00000464184.5_1_X:129473893-129492795:+|nuORF;nc|ENSG00000102078|O95258-2|SLC25A14;ENSG00000102078|ENST00000545805|SLC25A14;nc|ENSG00000102078|O95258-3|SLC25A14;ENST00000467496.5_1_X:129474252-129484631:+|nuORF ENSG00000174032|ENST00000519676|SLC25A30;ENST00000467496.5_1_X:129474252-129484631:+|nuORF ENSG00000174032|ENST00000519676|SLC25A30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2780151367188 2 512.279118 1022.54368 -0.25762 -0.00013198 -1.9766 -0.0010126 -2.2342 -0.0011446 512.2789200615643 42.189 0.32 41.882 41.641 41.961 -0.30682 18 15 2 0 0 0 0.1131 1 22437 22437 44.407 10.305 1 6923100 45374 8386;13780 30181 30921 53333 53333 0.03331242074330021 PFWDDADF 8 Unmodified _PFWDDADF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7055969238281 2 506.705983 1011.39741 0.044574 2.2586E-05 -0.30345 -0.00015376 -0.25887 -0.00013117 506.70588966355 52.064 0.26743 52.064 51.908 52.175 0 22 11 3 0 0 0 0.78849 1 28782 28782 9.3474 0 1 8251400 45375 5669 30182 30922 53334 53334 -0.10783060161577396 PFWVRLTNEE 10 Unmodified _PFWVRLTNEE_ 0 0 0 ENSG00000244219|ENST00000431679|TMEM225B ENSG00000244219|ENST00000431679|TMEM225B ENSG00000244219|ENST00000431679|TMEM225B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8891906738281 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 99.481 1 99.444 98.944 99.944 -0.036301 0 0 0 1.0019 1 55250 55250 0.15932 0 1 45376 10727 30183 30923 53335 53335 0.007201845634881465 PFYDKPMRI 9 Unmodified _PFYDKPMRI_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF ENSG00000077312|ENST00000243563|SNRPA ENSG00000077312|ENST00000243563|SNRPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5395202636719 3 389.539077 1165.5954 1.3765 0.00053622 0.80731 0.00031448 2.1839 0.0008507 389.5391990459178 48.42 0.36579 43.186 43.018 43.384 -5.2339 42 21 3 0 0 0 0.0085164 2 30124 30124;30257 80.676 50.835 1 19650000 45377 1213 30184 30924 53336;53337 53336 0.01922662496576777 PFYDKPMRI 9 Unmodified _PFYDKPMRI_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000598923.1_1_19:41257313-41268988:+|nuORF ENSG00000077312|ENST00000243563|SNRPA ENSG00000077312|ENST00000243563|SNRPA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.539077 1165.5954 0.3971 0.00015468 0.52541 0.00020467 0.9225 0.00035935 389.8735727246978 43.246 0.10206 43.23 43.144 43.246 -0.015667 0.022039 -0.00029304 NaN 80.676 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1663500 45378 1213 30184 30924 0.01922662496576777 PFYDPCFQYS 10 Unmodified _PFYDPCFQYS_ 0 0 0 REV__nc|ENSG00000004948|P30988-4|CALCR REV__nc|ENSG00000004948|P30988-4|CALCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.760009765625 2 633.760432 1265.50631 -0.64793 -0.00041063 -0.084948 -5.3837E-05 -0.73288 -0.00046447 633.7608020001309 27.607 0.23169 27.607 27.53 27.761 0 15 10 2 0 0 0 0.6966 1 14227 14227 3.2813 0 1 1314800 + 45379 29480 30185 30925 53338 53338 -0.11582217253612725 PFYEDYEQI 9 Unmodified _PFYEDYEQI_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8453063964844 3 401.845 1202.51317 0.85876 0.00034509 0.83531 0.00033566 1.6941 0.00068075 401.84535621062776 50.123 0.2648 49.731 49.607 49.872 -0.3923 26 12 3 0 0 0 0.58466 1 27008 27008 2.9952 2.033 1 1809100 + 45380 17421 30186 30926 53339 53339 -0.07998581101378477 PFYEDYEQI 9 Unmodified _PFYEDYEQI_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 401.845 1202.51317 0.85876 0.00034509 0.83531 0.00033566 1.6941 0.00068075 401.84535621062776 50.123 0.2648 49.731 49.607 49.872 -0.3923 -0.0055128 -0.00041236 NaN 2.9952 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1809100 + 45381 17421 30186 30926 -0.07998581101378477 PFYFAVHPDF 10 Unmodified _PFYFAVHPDF_ 0 0 0 nc|ENSG00000179152|Q8N3R3-3|TCAIM;nc|ENSG00000179152|Q8N3R3-2|TCAIM;ENSG00000179152|ENST00000342649|TCAIM nc|ENSG00000179152|Q8N3R3-3|TCAIM;ENSG00000179152|ENST00000342649|TCAIM ENSG00000179152|ENST00000342649|TCAIM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.2943725585938 2 620.295299 1238.57605 NaN NaN NaN NaN NaN NaN NaN 66.055 1 65.572 65.072 66.072 -0.48323 0 0 0 0.81521 1 36060 36060 11.64 0 1 45382 8816;16417 30187 30927 53340 53340 -0.033699705226808874 PFYNQTIY 8 Unmodified _PFYNQTIY_ 0 0 0 REV__CD55-C4BPA|1|fusion;REV__nc|ENSG00000196352|P08174-6|CD55 REV__CD55-C4BPA|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2532348632812 2 523.2531 1044.49165 0.76878 0.00040226 -0.48313 -0.0002528 0.28565 0.00014947 523.2530726035264 80.713 0.78232 80.221 79.731 80.513 -0.49247 49 32 2 0 0 0 0.80044 1 44083 44083 6.3541 0 1 644640 + 45383 16758;29879 30188 30928 53341 53341 -0.02881921339417204 PFYPPPFFFFF 11 Unmodified _PFYPPPFFFFF_ 0 0 0 ENST00000467087.5_2_4:26862451-26862580:+|nuORF ENST00000467087.5_2_4:26862451-26862580:+|nuORF ENST00000467087.5_2_4:26862451-26862580:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.9079284667969 3 484.905754 1451.69543 0.63433 0.00030759 2.6074 0.0012643 3.2417 0.0015719 484.9073551302839 47.836 0.16888 47.797 47.7 47.869 -0.038643 12 7 2 0 0 0 0.65538 1 25813 25813 8.4443 3.7284 1 1437100 45384 13768 30189 30929 53342 53342 -0.012347768979907414 PFYPPPPPPF 10 Unmodified _PFYPPPPPPF_ 0 0 0 REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171 REV__nc|ENSG00000157111|Q8WVE6-2|TMEM171 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3331298828125 2 578.29731 1154.58007 0.43823 0.00025342 -3.6053 -0.0020849 -3.1671 -0.0018315 578.2952421482332 58.127 0.32542 58.127 57.99 58.316 0 22 12 3 0 0 0 0.22327 1 32410 32410 18.135 1.0221 1 1082600 + 45385 21365 30190 30930 53343 53343 0.008961189710362305 PFYRGERITF 10 Unmodified _PFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2279052734375 3 429.227779 1284.66151 1.3038 0.00055962 -0.95293 -0.00040903 0.35085 0.00015059 429.22737749470025 46.902 0.48612 46.869 46.51 46.996 -0.033417 59 14 5 0 0 0 0.39689 2 25285 25184;25285 21.799 13.693 1 187590000 45386 2113 30191 30931 53344;53345 53345 0.030561946629632075 PFYRGERITF 10 Unmodified _PFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8411254882812 2 643.33803 1284.66151 1.3384 0.00086106 -0.57456 -0.00036963 0.76386 0.00049142 643.3373972855582 46.889 0.18408 46.856 46.753 46.938 -0.033417 23 8 3 0 0 0 0.16688 1 25234 25234 29.841 4.4413 1 5415500 45387 2113 30191 30931 53346 53346 0.030561946629632075 PFYRGERITF 10 Unmodified _PFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2283325195312 3 429.227779 1284.66151 0.38148 0.00016374 0.59199 0.0002541 0.97346 0.00041784 429.2281365205173 65.652 0.57327 59.477 58.968 59.541 -6.1757 74 32 3 0 0 0 0.20771 1 42585 42585 32.898 15.035 1 25454000 45388 2113 30191 30931 53347 53347 0.030561946629632075 PFYRGERITF 10 Unmodified _PFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2281188964844 3 429.227779 1284.66151 0.84578 0.00036303 0.18869 8.0992E-05 1.0345 0.00044403 429.2279557332502 66.087 0.91402 59.912 59.541 60.455 -6.1757 88 52 2 0 0 0 0.14944 3 43035 42893;43035;43191 39.923 23.648 1 20270000 45389 2113 30191 30931 53348;53349;53350 53349 0.030561946629632075 PFYRGERITF 10 Unmodified _PFYRGERITF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MSMS AL20221201_MKP_PDAC_01 4 429.2284851074219 3 429.227779 1284.66151 NaN NaN NaN NaN NaN NaN NaN 65.817 1 59.641 59.141 60.141 -6.1757 0 0 0 0.20306 1 42756 42756 42.835 15.612 1 45390 2113 30191 30931 53351 53351 0.030561946629632075 PFYSSDPCL 9 Unmodified _PFYSSDPCL_ 0 0 0 ENST00000451653.5_2_3:42589735-42590053:-|nuORF ENST00000451653.5_2_3:42589735-42590053:-|nuORF ENST00000451653.5_2_3:42589735-42590053:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 514.7220458984375 2 514.723318 1027.43208 NaN NaN NaN NaN NaN NaN NaN 47.146 1 42.066 41.566 42.566 -5.0805 0 0 0 0.3092 1 29231 29231 24.674 3.8027 1 45391 13527 30192 30932 53352 53352 -0.08053560345115329 PFYTRNII 8 Unmodified _PFYTRNII_ 0 0 0 REV__nc|ENSG00000102886|Q7L5L3-1|GDPD3 REV__nc|ENSG00000102886|Q7L5L3-1|GDPD3 MSMS AL20221201_MKP_PDAC_01 4 512.2882080078125 2 512.284734 1022.55492 NaN NaN NaN NaN NaN NaN NaN 59.21 1 53.135 52.635 53.635 -6.0745 0 0 0 0.83301 1 37995 37995 21.747 0.87544 1 + 45392 18263 30193 30933 53353 53353 0.044540641684761795 PFYYKSFTYI 10 Unmodified _PFYYKSFTYI_ 0 0 0 REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF REV__ENST00000481603.1_1_11:5631742-5632569:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.8299560546875 2 664.831714 1327.64888 NaN NaN NaN NaN NaN NaN NaN 66.395 1 65.912 65.412 66.412 -0.48323 0 0 0 0.92825 1 36255 36255 6.7232 0.99131 1 + 45393 19282 30194 30934 53354 53354 -0.0018426151989388018 PFYYSVEEL 9 Unmodified _PFYYSVEEL_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5;REV__nc|ENSG00000109572|P51790-5|CLCN3 REV__nc|ENSG00000171365|P51795-1|CLCN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8498229980469 3 382.849974 1145.52809 0.76078 0.00029126 -0.51087 -0.00019559 0.24991 9.5676E-05 382.84972881157717 81.444 0.2759 80.952 80.815 81.091 -0.49247 18 11 2 0 0 0 0.58466 1 44644 44644 1.1933 0 1 534880 + 45394 22555;18663 30195 30935 53355 53355 -0.03885089233358485 PGACDYHQD 9 Unmodified _PGACDYHQD_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2717895507812 2 503.190174 1004.36579 0.3865 0.00019448 0.96359 0.00048487 1.3501 0.00067936 503.1905101400859 40.092 0.1969 40.092 39.973 40.17 0 17 9 2 0 0 0 0.20528 1 21538 21538 4.756 0 1 2177300 45395 6218;14777 30196 30936 53356 53356 -0.13621376187177248 PGACTAAEPQV 11 Unmodified _PGACTAAEPQV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7664184570312 2 522.244949 1042.47534 1.0046 0.00052465 1.1832 0.00061794 2.1878 0.0011426 522.2455856217372 40.665 0.31913 36.136 35.971 36.29 -4.5294 35 19 2 0 0 0 0.28226 1 24294 24294 12.241 0 1 16286000 + 45396 17027;28463 30197 30937 53357 53357 -0.04419370567848091 PGADPSDF 8 Unmodified _PGADPSDF_ 0 0 0 ENST00000374980.2_1_20:32693350-32700101:-|nuORF ENST00000374980.2_1_20:32693350-32700101:-|nuORF ENST00000374980.2_1_20:32693350-32700101:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.1712646484375 2 403.171776 804.328998 NaN NaN NaN NaN NaN NaN NaN 75.521 1 75.044 74.544 75.544 -0.47714 0 0 0 0.97444 1 41342 41342 0.69038 0 1 45397 12465 30198 30938 53358 53358 -0.0809930474142675 PGAESILLL 9 Unmodified _PGAESILLL_ 0 0 0 ENST00000563104.5_1_16:71841975-71842665:-|nuORF ENST00000563104.5_1_16:71841975-71842665:-|nuORF ENST00000563104.5_1_16:71841975-71842665:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.5418701171875 1 912.54006 911.532783 0.058428 5.3318E-05 0.51493 0.00046989 0.57336 0.00052321 912.5403617757812 81.366 0.30452 81.366 81.161 81.465 0 22 13 2 0 0 0 0.2143 2 45101 45101;45194 21.747 0 1 408120 45398 15353 30199 30939 53359;53360 53359 0.0734783970007129 PGAESILLL 9 Unmodified _PGAESILLL_ 0 0 0 ENST00000563104.5_1_16:71841975-71842665:-|nuORF ENST00000563104.5_1_16:71841975-71842665:-|nuORF ENST00000563104.5_1_16:71841975-71842665:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.5405883789062 1 912.54006 911.532783 0.34047 0.00031069 1.724 0.0015732 2.0644 0.0018839 912.5405828635221 81.765 0.35777 81.269 81.113 81.471 -0.4952 17 13 2 0 0 0 0.2143 1 44751 44751 21.747 0 1 343290 45399 15353 30199 30939 53361 53361 0.0734783970007129 PGAGLFRL 8 Unmodified _PGAGLFRL_ 0 0 0 ENST00000456917.1_1_21:26934232-26934301:+|nuORF ENST00000456917.1_1_21:26934232-26934301:+|nuORF ENST00000456917.1_1_21:26934232-26934301:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.7490234375 2 415.747788 829.481023 1.3355 0.00055522 -1.1493 -0.00047783 0.18614 7.7385E-05 415.7476238485945 42.645 0.3689 37.961 37.807 38.176 -4.6846 31 24 2 0 0 0 0.77907 1 25802 25802 10.183 4.423 1 11490000 45400 13604 30200 30940 53362 53362 0.05946140796800137 PGALATSI 8 Unmodified _PGALATSI_ 0 0 0 REV__ENSG00000145826|ENST00000274507|LECT2 REV__ENSG00000145826|ENST00000274507|LECT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.553955078125 2 365.210704 728.406855 0.25793 9.4198E-05 3.3617 0.0012277 3.6196 0.0013219 365.2121177444335 50.986 0.31885 50.932 50.728 51.047 -0.053871 22 15 2 0 0 0 8.7369 1 27610 27610 6.3541 0 1 3490800 + 45401 20796 30201 30941 53363 53363 0.03178752914618599 PGALLKYIGP 10 Unmodified _PGALLKYIGP_ 0 0 0 ENSG00000089057|ENST00000338244|SLC23A2;ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF ENSG00000089057|ENST00000338244|SLC23A2 ENSG00000089057|ENST00000338244|SLC23A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8110961914062 2 514.810585 1027.60662 0.090593 4.6638E-05 0.77572 0.00039935 0.86632 0.00044599 514.8105854628569 69.113 0.64754 68.633 68.202 68.849 -0.48071 75 28 4 0 0 0 0.25327 1 37791 37791 30.225 0 1 2823300 45402 1512 30202 30942 53364 53364 0.0939180786238012 PGALLKYIGP 10 Unmodified _PGALLKYIGP_ 0 0 0 ENSG00000089057|ENST00000338244|SLC23A2;ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF ENSG00000089057|ENST00000338244|SLC23A2 ENSG00000089057|ENST00000338244|SLC23A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.740966796875 2 514.810585 1027.60662 0.64128 0.00033014 -1.2853 -0.00066168 -0.64401 -0.00033155 514.8095774990587 81.8 1.4932 75.625 75.15 76.643 -6.1757 167 84 3 0 0 0 0.57332 1 54234 54234 12.532 12.532 1 27595000 45403 1512 30202 30942 53365 53365 0.0939180786238012 PGAPHGWF 8 Unmodified _PGAPHGWF_ 0 0 0 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.7088012695312 2 434.708663 867.402772 -0.057227 -2.4877E-05 -0.049425 -2.1486E-05 -0.10665 -4.6363E-05 434.7086688376437 51.35 0.27427 51.296 51.127 51.401 -0.053871 19 13 2 0 0 0 0.76859 1 27770 27770 11.114 0.29054 1 3373400 + 45404 20575 30203 30943 53366 53366 -0.03623291788426286 PGAPQRGRYL 10 Unmodified _PGAPQRGRYL_ 0 0 0 ENST00000476438.1_1_16:632096-633032:+|nuORF ENST00000476438.1_1_16:632096-633032:+|nuORF ENST00000476438.1_1_16:632096-633032:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2088317871094 3 372.208718 1113.60433 0.074638 2.7781E-05 0.71536 0.00026626 0.79 0.00029404 372.2091845559095 20.108 0.23359 20.118 19.988 20.221 0.010269 26 11 3 0 0 0 0.6606 1 10242 10242 3.8763 0 1 367100 45405 13983 30204 30944 53367 53367 0.052067721772800724 PGAPRLVH 8 Unmodified _PGAPRLVH_ 0 0 0 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.7510681152344 2 423.750862 845.487171 NaN NaN NaN NaN NaN NaN NaN 18.852 1 18.875 18.375 19.375 0.023106 0 0 0 0.97444 1 9480 9480 0.79363 0 1 45406 8962 30205 30945 53368 53368 0.05824659028326096 PGAPSGVGPV 10 Unmodified _PGAPSGVGPV_ 0 0 0 REV__ENST00000587391.5_1_19:36592854-36593151:+|nuORF REV__ENST00000587391.5_1_19:36592854-36593151:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2276000976562 2 419.226885 836.439217 1.2026 0.00050417 0.78394 0.00032865 1.9866 0.00083282 419.2272713301945 42.881 0.4365 38.196 37.994 38.431 -4.6846 38 27 2 0 0 0 0.39779 1 26050 26050 21.747 0 1 9981500 + 45407 29118 30206 30946 53369 53369 0.014455403176157233 PGAPVLQP 8 Unmodified _PGAPVLQP_ 0 0 0 REV__ENSG00000153879|ENST00000284000|CEBPG REV__ENSG00000153879|ENST00000284000|CEBPG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5280151367188 2 389.726521 777.438489 0.40811 0.00015905 -3.7611 -0.0014658 -3.353 -0.0013068 389.72674447142225 40.23 0.16496 39.933 39.843 40.008 -0.29716 10 7 2 0 0 0 8.7369 1 21257 21257 10.183 0 1 691360 + 45408 21191 30207 30947 53370 53370 0.04086745668575986 PGAPWEEDEIR 11 Unmodified _PGAPWEEDEIR_ 0 0 0 nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10 nc|ENSG00000183317|Q5JZY3-3|EPHA10 nc|ENSG00000183317|Q5JZY3-3|EPHA10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.3074340820312 2 649.804217 1297.59388 0.60882 0.00039561 4.0404 0.0026255 4.6492 0.0030211 649.806278272212 69.504 0.16864 69.535 69.495 69.664 0.030914 10 8 2 0 0 0 0.27103 1 38193 38193 13.615 0 1 7322600 45409 9135 30208 30948 53371 53371 -0.04301300058477864 PGAQHEPHF 9 Unmodified _PGAQHEPHF_ 0 0 0 REV__ENSG00000084774|ENST00000264705|CAD REV__ENSG00000084774|ENST00000264705|CAD MSMS AL20221201_MKP_PDAC_01 4 509.8305969238281 2 510.238316 1018.46208 NaN NaN NaN NaN NaN NaN NaN 102.44 1 96.269 95.769 96.769 -6.1757 0 0 0 0.82396 1 68747 68747 4.756 0.42677 1 + 45410 17742 30209 30949 53372 53372 -0.046414405649102264 PGAQRCQHY 9 Unmodified _PGAQRCQHY_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8321533203125 3 353.831142 1058.4716 NaN NaN NaN NaN NaN NaN NaN 37.497 1 37.497 36.997 37.997 0 0 0 0 0.84369 1 19958 19958 1.1933 0 1 45411 10887 30210 30950 53373 53373 -0.055299955510463406 PGARCLCA 8 Unmodified _PGARCLCA_ 0 0 0 ENST00000336138.3_1_8:143808682-143808889:+|nuORF ENST00000336138.3_1_8:143808682-143808889:+|nuORF ENST00000336138.3_1_8:143808682-143808889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.6875305175781 2 395.688558 789.362564 NaN NaN NaN NaN NaN NaN NaN 87.218 1 86.714 86.214 87.214 -0.50423 0 0 0 0.97444 1 47713 47713 0.79363 0.10326 1 45412 11905 30211 30951 53374 53374 -0.04054297774882798 PGARLQAL 8 Unmodified _PGARLQAL_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2505493164062 2 413.250695 824.486836 0.76914 0.00031785 0.50973 0.00021064 1.2789 0.00052849 413.2507269221398 43.953 0.41286 39.188 38.985 39.398 -4.7648 47 26 2 0 0 0 0.41521 1 26665 26665 42.968 3.0107 1 17732000 45413 1752 30212 30952 53375 53375 0.06757239308467433 PGATAMSLL 9 Unmodified _PGATAMSLL_ 0 0 0 REV__ENST00000429993.1_1_2:48166891-48167098:-|nuORF REV__ENST00000429993.1_1_2:48166891-48167098:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.7312622070312 2 430.730946 859.447339 0.90586 0.00039018 0.86419 0.00037223 1.77 0.00076241 430.73138845611004 34.561 0.48601 30.466 30.214 30.7 -4.0951 67 28 3 0 0 0 0.28047 1 19853 19853 18.135 0 1 58631000 + 45414 26959 30213 30953 53376 53376 0.011993512427466158 PGATKKGS 8 Unmodified _PGATKKGS_ 0 0 0 REV__ENSG00000123562|ENST00000441076|MORF4L2 REV__ENSG00000123562|ENST00000441076|MORF4L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2134094238281 2 373.213778 744.413003 1.4565 0.00054357 -2.4649 -0.00091994 -1.0084 -0.00037636 373.21254327744776 81.09 0.3523 74.914 74.66 75.013 -6.1757 22 19 2 0 0 0 0.80447 1 53105 53105 3.9444 0 1 12675000 + 45415 19393 30214 30954 53377 53377 0.03057271146144558 PGATLRYH 8 Unmodified _PGATLRYH_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2314758300781 2 457.745776 913.477 1.5861 0.00072604 1.0893 0.00049863 2.6754 0.0012247 457.7461747037 50.197 0.56768 50.148 49.865 50.433 -0.048828 41 27 2 0 0 0 8.7369 1 27088 27088 2.8892 0.31174 1 988880 45416 6602 30215 30955 53378 53378 0.01680051303083019 PGAVIHSL 8 Unmodified _PGAVIHSL_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2318420410156 2 397.231971 792.449388 0.26509 0.0001053 -0.3072 -0.00012203 -0.04211 -1.6727E-05 397.231910964872 59.899 0.3127 59.408 59.214 59.527 -0.49079 27 15 2 0 0 0 0.078553 2 32659 32550;32659 112.56 52.763 1 3116400 45417 2805 30216 30956 53379;53380 53380 0.04486148042860805 PGAVIHSL 8 Unmodified _PGAVIHSL_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2322692871094 2 397.231971 792.449388 0.13198 5.2428E-05 0.42458 0.00016866 0.55657 0.00022109 397.23232667926 59.562 0.36195 59.509 59.293 59.655 -0.053062 30 18 2 0 0 0 0.086157 1 32417 32417 104.31 25.866 1 3999800 45418 2805 30216 30956 53381 53381 0.04486148042860805 PGAVIHSL 8 Unmodified _PGAVIHSL_ 0 0 0 ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B ENSG00000111647|ENST00000279907|BLTP3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2330932617188 2 397.231971 792.449388 0.80272 0.00031886 0.48505 0.00019268 1.2878 0.00051154 397.23222027447133 65.132 0.59966 58.957 58.666 59.266 -6.1757 62 33 3 0 0 0 0.086157 2 42155 42155;42288 104.31 44.515 1 25673000 45419 2805 30216 30956 53382;53383 53382 0.04486148042860805 PGCVTVSQDF 10 Unmodified _PGCVTVSQDF_ 0 0 0 ENST00000520394.5_2_5:167525066-167525114:+|nuORF ENST00000520394.5_2_5:167525066-167525114:+|nuORF ENST00000520394.5_2_5:167525066-167525114:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.4959716796875 3 351.495425 1051.46445 0.8452 0.00029708 0.59502 0.00020915 1.4402 0.00050623 351.4955931473214 42.781 0.34223 42.781 42.586 42.928 0 36 17 3 0 0 0 0.69064 1 23156 23156 1.9064 0 1 5614300 45420 14726 30217 30957 53384 53384 -0.059227729421081676 PGDAASKR 8 Unmodified _PGDAASKR_ 0 0 0 nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I nc|ENSG00000100346|Q9P0X4-4|CACNA1I nc|ENSG00000100346|Q9P0X4-4|CACNA1I MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2156982421875 2 401.214309 800.414065 NaN NaN NaN NaN NaN NaN NaN 60.163 1 60.11 59.61 60.61 -0.053062 0 0 0 0.36683 1 32808 32808 57.471 6.6163 1 45421 1801 30218 30958 53385 53385 0.00587485515040953 PGDFAEEL 8 Unmodified _PGDFAEEL_ 0 0 0 nc|ENSG00000140326|Q8IWY9-1|CDAN1;ENSG00000140326|ENST00000356231|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 nc|ENSG00000140326|Q8IWY9-1|CDAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.3988647460938 1 877.39379 876.386513 0.42141 0.00036974 0.72926 0.00063985 1.1507 0.0010096 877.3942562423406 60.778 0.32603 60.778 60.581 60.907 0 22 13 2 0 0 0 0.61462 1 33843 33843 24.674 6.5389 1 1919800 45422 5224 30219 30959 53386 53386 -0.056624625358494995 PGDLYQSLSF 10 Unmodified _PGDLYQSLSF_ 0 0 0 REV__ENST00000544520.5_1_15:72546082-72558314:-|nuORF REV__ENST00000544520.5_1_15:72546082-72558314:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.276611328125 2 563.774396 1125.53424 0.10495 5.917E-05 1.8655 0.0010517 1.9704 0.0011109 563.7756542373148 51.637 0.3361 51.203 50.988 51.325 -0.43367 37 17 3 0 0 0 0.22316 1 27776 27776 20.415 2.2796 1 9737200 + 45423 20270 30220 30960 53387 53387 -0.02350571001852586 PGDQQPHEVY 10 Unmodified _PGDQQPHEVY_ 0 0 0 nc|ENSG00000196767|P49335|POU3F4;ENSG00000196767|ENST00000644024|POU3F4 nc|ENSG00000196767|P49335|POU3F4 nc|ENSG00000196767|P49335|POU3F4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2648315429688 2 585.264727 1168.5149 0.25173 0.00014733 -0.14728 -8.6197E-05 0.10445 6.1132E-05 585.2649425308804 66.397 0.42349 66.397 66.153 66.576 0 48 18 4 0 0 0 0.67459 1 37072 37072 5.7319 0.43497 1 2818200 45424 9867 30221 30961 53388 53388 -0.06261527292758728 PGDTLYYRFT 10 Unmodified _PGDTLYYRFT_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3912804-3919778:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.3279418945312 2 616.800946 1231.58734 0.37285 0.00022997 -1.5337 -0.00094601 -1.1609 -0.00071604 616.8007967314502 63.01 0.30071 63.01 62.846 63.146 0 18 12 2 0 0 0 0.23412 1 35145 35145 9.3831 0.63772 1 923140 45425 1133 30222 30962 53389 53389 -0.01919193219191584 PGDYDFEV 8 Unmodified _PGDYDFEV_ 0 0 0 REV__ENSG00000183044|ENST00000268251|ABAT REV__ENSG00000183044|ENST00000268251|ABAT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.7840576171875 2 471.19799 940.381428 0.51553 0.00024292 1.6703 0.00078703 2.1858 0.0010299 471.198814746287 45.496 0.33389 40.541 40.425 40.759 -4.9549 31 22 2 0 0 0 8.7369 1 28093 28093 5.7604 5.0701 1 11822000 + 45426 23314 30223 30963 53390 53390 -0.0911476639846569 PGEIAIIK 8 Unmodified _PGEIAIIK_ 0 0 0 REV__ENSG00000177602|ENST00000325418|HASPIN REV__ENSG00000177602|ENST00000325418|HASPIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.763671875 2 420.763104 839.511654 NaN NaN NaN NaN NaN NaN NaN 28.004 1 28.004 27.504 28.504 0 0 0 0 0.97444 1 14446 14446 2.8892 0 1 + 45427 22995 30224 30964 53391 53391 0.0854787439119491 PGEIDVKPG 9 Unmodified _PGEIDVKPG_ 0 0 0 REV__ENSG00000124942|ENST00000378024|AHNAK REV__ENSG00000124942|ENST00000378024|AHNAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2434387207031 2 456.245275 910.475997 NaN NaN NaN NaN NaN NaN NaN 66.918 1 66.918 66.418 67.418 0 0 0 0 0.83049 1 37321 37321 3.9444 0 1 + 45428 19475 30225 30965 53392 53392 0.01717792143540464 PGEPIYIGHI 10 Unmodified _PGEPIYIGHI_ 0 0 0 nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1 nc|ENSG00000151276|Q96QZ7-4|MAGI1 nc|ENSG00000151276|Q96QZ7-4|MAGI1 MSMS AL20221201_MKP_PDAC_01 4 365.8674011230469 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 36.026 1 31.834 31.334 32.334 -4.1928 0 0 0 0.79473 1 20989 20989 7.1017 0 1 45429 6102 30226 30966 53393 53393 0.03254029477329823 PGEQTYQL 8 Unmodified _PGEQTYQL_ 0 0 0 REV__ENSG00000170260|ENST00000335870|ZNF212 REV__ENSG00000170260|ENST00000335870|ZNF212 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2283935546875 2 468.227082 934.439611 1.2383 0.0005798 -0.82918 -0.00038825 0.4091 0.00019155 468.2267273465307 42.727 0.1905 42.727 42.586 42.776 0 14 9 2 0 0 0 0.72953 1 23172 23172 14.582 3.4672 1 1598300 + 45430 22461 30227 30967 53394 53394 -0.030230847531811378 PGEQTYQL 8 Unmodified _PGEQTYQL_ 0 0 0 REV__ENSG00000170260|ENST00000335870|ZNF212 REV__ENSG00000170260|ENST00000335870|ZNF212 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 468.227082 934.439611 1.2383 0.0005798 -0.82918 -0.00038825 0.4091 0.00019155 468.2267273465307 42.727 0.1905 42.727 42.586 42.776 0 0 0 NaN 14.582 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1598300 + 45431 22461 30227 30967 -0.030230847531811378 PGEVLEYI 8 Unmodified _PGEVLEYI_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2428283691406 2 460.242201 918.469849 NaN NaN NaN NaN NaN NaN NaN 58.813 1 58.813 58.313 59.313 0 0 0 0 0.90769 1 32755 32755 18.135 0 1 45432 16205 30228 30968 53395 53395 0.007352739120165097 PGEWNWPL 8 Unmodified _PGEWNWPL_ 0 0 0 ENST00000497918.5_1_2:220029863-220033027:-|nuORF;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3 ENST00000497918.5_1_2:220029863-220033027:-|nuORF ENST00000497918.5_1_2:220029863-220033027:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.769287109375 2 499.74016 997.465767 0.42365 0.00021171 1.091 0.0005452 1.5146 0.00075692 499.7412256729639 45.955 0.17577 45.927 45.844 46.02 -0.028011 10 7 2 0 0 0 8.7369 1 24721 24721 14.582 1.0738 1 978510 45433 10463 30229 30969 53396 53396 -0.033067707910504396 PGFHVQPP 8 Unmodified _PGFHVQPP_ 0 0 0 MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MLT1K_dup15840|chr19:35157523-35158030:-|1.610239369015179|0.3327659589692898|2.27|178.0|30|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.7296142578125 2 439.729595 877.444637 0.54653 0.00024032 -0.43658 -0.00019198 0.10995 4.8346E-05 439.7293145505159 46.556 0.21482 46.219 46.112 46.327 -0.33664 23 10 3 0 0 0 0.50586 1 24906 24906 34.187 7.8461 1 6926100 45434 15996 30230 30970 53397 53397 0.0010126390008053932 PGFTLPLPCTL 11 Unmodified _PGFTLPLPCTL_ 0 0 0 ENST00000589644.1_1_19:38799520-38799736:-|nuORF ENST00000589644.1_1_19:38799520-38799736:-|nuORF ENST00000589644.1_1_19:38799520-38799736:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8811950683594 3 386.879099 1157.61547 0.72683 0.0002812 1.7686 0.00068425 2.4955 0.00096544 386.8813940746057 17.147 0.020298 14.56 14.551 14.572 -2.5866 7 4 2 0 0 0 0.67922 1 8947 8947 2.8433 0.75728 1 1575500 45435 15674 30231 30971 53398 53398 0.042964134365320206 PGFYRDLRRPF 11 Unmodified _PGFYRDLRRPF_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 475.3017883300781 3 475.257961 1422.75205 1.2331 0.00058604 -0.73061 -0.00034723 0.50249 0.00023881 475.25781937479263 37.377 0.38662 33.093 32.827 33.213 -4.2835 44 22 3 0 0 0 0.30303 1 21915 21915 3.0723 0 1 23331000 45436 1127 30232 30972 53399 53399 0.057586637112535755 PGGAAFGF 8 Unmodified _PGGAAFGF_ 0 0 0 ENST00000566261.5_1_16:19179378-19184762:+|nuORF ENST00000566261.5_1_16:19179378-19184762:+|nuORF ENST00000566261.5_1_16:19179378-19184762:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1772766113281 2 362.176664 722.338775 -0.32621 -0.00011815 1.4273 0.00051694 1.1011 0.00039879 362.1771056609811 34.896 0.65907 34.705 34.351 35.01 -0.19131 42 29 2 0 0 0 0.80975 1 18243 18243 0.79363 0 1 1661200 45437 15417 30233 30973 53400 53400 -0.03350071945374111 PGGAAFGF 8 Unmodified _PGGAAFGF_ 0 0 0 ENST00000566261.5_1_16:19179378-19184762:+|nuORF ENST00000566261.5_1_16:19179378-19184762:+|nuORF ENST00000566261.5_1_16:19179378-19184762:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 362.176664 722.338775 -0.57282 -0.00020746 1.3528 0.00048996 0.77999 0.0002825 362.1771249822635 34.69 0.49974 34.69 34.478 34.977 0 -0.0072678 -3.0799E-05 NaN 0.79363 31 25 2 NaN NaN NaN NaN 0 NaN NaN 0 1935300 45438 15417 30233 30973 -0.03350071945374111 PGGAKAKR 8 Unmodified _PGGAKAKR_ 0 0 0 REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF REV__ENST00000496391.5_2_7:102066419-102066686:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.7437744140625 2 392.743037 783.471521 1.3933 0.0005472 0.86175 0.00033845 2.255 0.00088565 392.74325964308457 20.408 0.26142 17.715 17.559 17.82 -2.693 22 14 2 0 0 0 0.80975 1 10832 10832 0.79363 0 1 2584200 + 45439 27962 30234 30974 53401 53401 0.0711237251126704 PGGDQRRPFAY 11 Unmodified _PGGDQRRPFAY_ 0 0 0 REV__ENSG00000132623|ENST00000378392|ANKEF1 REV__ENSG00000132623|ENST00000378392|ANKEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.3165283203125 2 632.315086 1262.61562 NaN NaN NaN NaN NaN NaN NaN 68.105 1 67.623 67.123 68.123 -0.48218 0 0 0 0.9385 1 37218 37218 3.5965 0.31518 1 + 45440 19867 30235 30975 53402 53402 -0.005184505192346478 PGGKLLDF 8 Unmodified _PGGKLLDF_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 423.2392883300781 2 423.739628 845.464704 0.65861 0.00027908 -1.1726 -0.00049688 -0.51399 -0.0002178 423.7395496789377 27.917 0.43434 24.768 24.568 25.003 -3.1482 73 23 4 0 0 0 8.7369 1 15641 15641 0.79363 0 1 32710000 + 45441 24644 30236 30976 53403 53403 0.035790148400337785 PGGLSEGGLP 10 Unmodified _PGGLSEGGLP_ 0 0 0 chr11:404323-404537|39|16.38|0.66|4.64|+|2|PKP3,None|2 chr11:404323-404537|39|16.38|0.66|4.64|+|2|PKP3,None|2 chr11:404323-404537|39|16.38|0.66|4.64|+|2|PKP3,None|2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2279357910156 2 442.229625 882.444697 NaN NaN NaN NaN NaN NaN NaN 39.466 1 39.466 38.966 39.966 0 0 0 0 0.83398 1 21152 21152 10.824 1.4765 1 45442 71 30237 30977 53404 53404 -0.0012278089055826058 PGGLSFLL 8 Unmodified _PGGLSFLL_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2371520996094 2 402.236722 802.45889 0.37005 0.00014885 -0.24698 -9.9344E-05 0.12307 4.9505E-05 402.23648940271653 51.955 0.25065 51.521 51.418 51.669 -0.43367 19 12 2 0 0 0 0.5953 1 28052 28052 26.341 0 1 2514200 + 45443 22717 30238 30978 53405 53405 0.049759163283852104 PGGLSFLL 8 Unmodified _PGGLSFLL_ 0 0 0 REV__ENSG00000173269|ENST00000372027|MMRN2 REV__ENSG00000173269|ENST00000372027|MMRN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 402.236722 802.45889 0.37005 0.00014885 -0.24698 -9.9344E-05 0.12307 4.9505E-05 402.23648940271653 51.955 0.25065 51.521 51.418 51.669 -0.43367 -0.010948 -0.00039384 NaN 26.341 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2514200 + 45444 22717 30238 30978 0.049759163283852104 PGGPCGRK 8 Unmodified _PGGPCGRK_ 0 0 0 REV__ENST00000399410.7_1_16:16103685-16110378:+|nuORF REV__ENST00000399410.7_1_16:16103685-16110378:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1992797851562 2 386.200148 770.385742 0.045621 1.7619E-05 -1.684 -0.00065035 -1.6383 -0.00063273 386.1994517945876 89.598 0.40718 89.598 89.453 89.86 0 33 26 2 0 0 0 0.81107 1 49583 49583 0 0 1 433260 + 45445 26583 30239 30979 53406 53406 -0.008635356659056015 PGGPGSFE 8 Unmodified _PGGPGSFE_ 0 0 0 ENSG00000141569|ENST00000269383|TRIM65 ENSG00000141569|ENST00000269383|TRIM65 ENSG00000141569|ENST00000269383|TRIM65 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 747.3309936523438 1 747.330795 746.323519 0.33438 0.00024989 -0.43848 -0.00032769 -0.1041 -7.7796E-05 747.3301946784466 75.771 0.28967 75.294 75.19 75.479 -0.47714 15 12 2 0 0 0 0.80975 1 41572 41572 0.79363 0 1 741820 45446 5355 30240 30980 53407 53407 -0.05978983533236715 PGGPPPRH 8 Unmodified _PGGPPPRH_ 0 0 0 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.7202758789062 2 407.719562 813.42457 -0.11468 -4.6756E-05 2.3583 0.00096154 2.2437 0.00091478 407.7202506460214 38.493 0.17082 38.51 38.394 38.565 0.017036 11 7 2 0 0 0 0.80624 1 20490 20490 2.8892 0 1 1750200 + 45447 21499 30241 30981 53408 53408 0.010395129601306508 PGGPTRFF 8 Unmodified _PGGPTRFF_ 0 0 0 REV__ENSG00000129173|ENST00000250024|E2F8 REV__ENSG00000129173|ENST00000250024|E2F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7298278808594 2 439.729595 877.444637 1.0808 0.00047526 -0.87 -0.00038256 0.2108 9.2696E-05 439.7291767496207 46.274 0.32964 46.241 46.101 46.431 -0.033421 38 15 3 0 0 0 0.63229 1 24972 24972 23.148 0.69579 1 22721000 + 45448 19654 30242 30982 53409 53409 0.0010126390008053932 PGGRRRSY 8 Unmodified _PGGRRRSY_ 0 0 0 REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant REV__UBAP2L|p.Q522Rfs*91|1|0.04|ENSG00000143569|chr1:154251554-154251560|AGTTTGG/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.75830078125 2 474.759749 947.504946 NaN NaN NaN NaN NaN NaN NaN 33.277 1 33.306 32.806 33.806 0.028934 0 0 0 0.97444 1 17501 17501 2.5775 0 1 + 45449 30130 30243 30983 53410 53410 0.02909374283183297 PGGSDVWVLP 10 Unmodified _PGGSDVWVLP_ 0 0 0 ENST00000509613.1_1_X:52928554-52936179:+|nuORF ENST00000509613.1_1_X:52928554-52936179:+|nuORF ENST00000509613.1_1_X:52928554-52936179:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2670288085938 2 513.766374 1025.5182 0.31274 0.00016068 -2.081 -0.0010691 -1.7683 -0.00090847 513.7662818926659 63.683 0.40365 63.197 62.969 63.373 -0.48617 49 18 5 0 0 0 0.31022 1 34662 34662 26.884 1.4843 1 8776000 45450 14577 30244 30984 53411 53411 0.0064576755189591495 PGHAARHRRR 10 Unmodified _PGHAARHRRR_ 0 0 0 REV__ENST00000405515.5_2_11:67957596-67981223:-|nuORF REV__ENST00000405515.5_2_11:67957596-67981223:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.235595703125 3 405.234372 1212.68129 0.97455 0.00039492 2.4972 0.001012 3.4718 0.0014069 405.2353949321982 18.939 0.19942 16.318 16.223 16.423 -2.6215 20 12 2 0 0 0 0.66569 1 10019 10019 3.5871 0 1 1847100 + 45451 26647 30245 30985 53412 53412 0.08345428236953012 PGHCCPMF 8 Unmodified _PGHCCPMF_ 0 0 0 ENST00000314289.12_2_4:2516465-2516672:+|nuORF ENST00000314289.12_2_4:2516465-2516672:+|nuORF ENST00000314289.12_2_4:2516465-2516672:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1698913574219 2 446.169144 890.323735 1.2715 0.00056732 0.89542 0.00039951 2.167 0.00096683 446.1694031920151 60.733 0.62614 54.586 54.292 54.918 -6.1478 53 33 2 0 0 0 0.80975 2 39100 39100;39244 0.79363 0.79363 1 43565000 45452 11722 30246 30986 53413;53414 53413 -0.12581346400895654 PGHESMYFHQ 10 Unmodified _PGHESMYFHQ_ 0 0 0 ENST00000445921.5_1_2:11304365-11312082:+|nuORF ENST00000445921.5_1_2:11304365-11312082:+|nuORF ENST00000445921.5_1_2:11304365-11312082:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5086669921875 3 411.509957 1231.50804 NaN NaN NaN NaN NaN NaN NaN 6.4852 1 6.4942 5.9942 6.9942 0.0089307 0 0 0 1.0024 1 3249 3249 0.13989 0.056541 1 45453 13459 30247 30987 53415 53415 -0.0984516344497024 PGHFVSPKS 9 Unmodified _PGHFVSPKS_ 0 0 0 REV__ENSG00000198846|ENST00000361421|TOX REV__ENSG00000198846|ENST00000361421|TOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.250732421875 2 478.253434 954.492316 0.35685 0.00017067 -0.80686 -0.00038588 -0.45001 -0.00021522 478.25274774869274 39.289 0.44096 39.289 39.154 39.595 0 27 20 2 0 0 0 0.25297 1 21056 21056 19.439 1.304 1 1023500 + 45454 24077 30248 30988 53416 53416 0.013249181002947807 PGHGHCCH 8 Unmodified _PGHGHCCH_ 0 0 0 REV__ENSG00000113905|ENST00000232003|HRG REV__ENSG00000113905|ENST00000232003|HRG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.1582641601562 2 424.157957 846.301361 NaN NaN NaN NaN NaN NaN NaN 69.075 1 69.075 68.575 69.575 0 0 0 0 0.97444 1 38491 38491 0 0 1 + 45455 18895 30249 30989 53417 53417 -0.1279380975429376 PGHPGLFPGL 10 Unmodified _PGHPGLFPGL_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3;FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2718200683594 2 496.271627 990.528701 1.0231 0.00050773 0.094293 4.6795E-05 1.1174 0.00055453 496.27168300480565 80.213 0.6186 74.038 73.55 74.168 -6.1757 87 37 3 0 0 0 0.34789 1 52651 52651 24.674 0 1 56294000 45456 5414 30250 30990 53418 53418 0.03305794997004341 PGHSGGHF 8 Unmodified _PGHSGGHF_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.18017578125 2 398.180269 794.345986 NaN NaN NaN NaN NaN NaN NaN 29.729 1 29.729 29.229 30.229 0 0 0 0 0.97444 1 15410 15410 2.8892 0 1 45457 265 30251 30991 53419 53419 -0.05941339344951757 PGIKQFPEP 9 Unmodified _PGIKQFPEP_ 0 0 0 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7779541015625 2 506.776742 1011.53893 1.5037 0.00076203 1.5064 0.0007634 3.0101 0.0015254 506.77738615466666 100.43 0.11258 100.39 100.32 100.43 -0.036301 5 3 2 0 0 0 0.48152 1 55809 55809 8.5933 0.68312 1 9567700 + 45458 21396 30252 30992 53420 53420 0.03362357931564475 PGIKQFPEP 9 Unmodified _PGIKQFPEP_ 0 0 0 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 REV__nc|ENSG00000157657|Q5T7W0-2|ZNF618 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.776742 1011.53893 1.5037 0.00076203 1.5064 0.0007634 3.0101 0.0015254 506.77738615466666 100.43 0.11258 100.39 100.32 100.43 -0.036301 0 0 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9567700 + 45459 21396 30252 30992 0.03362357931564475 PGIQRYRIT 9 Unmodified _PGIQRYRIT_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3;REV__ENSG00000149256|ENST00000278550|TENM4 REV__ENSG00000218336|ENST00000511685|TENM3 MSMS AL20221201_MKP_PDAC_01 4 552.3634033203125 2 552.31964 1102.62473 NaN NaN NaN NaN NaN NaN NaN 103.88 1 97.707 97.207 98.207 -6.1757 0 0 0 0.84737 1 69613 69613 1.8442 0 1 + 45460 24352;20987 30253 30993 53421 53421 0.07751942837080605 PGKFLDQGLDD 11 Unmodified _PGKFLDQGLDD_ 0 0 0 nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1;ENST00000442552.7_1_1:17085068-17087541:-|nuORF;nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000186715|Q2TV78|MST1L nc|ENSG00000173531|P26927|MST1;nc|ENSG00000186715|Q2TV78-2|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7930908203125 2 602.79586 1203.57717 NaN NaN NaN NaN NaN NaN NaN 58.95 1 58.95 58.45 59.45 0 0 0 0 0.85265 1 32832 32832 9.544 0.79857 1 45461 16463;8334 30254 30994 53422 53422 -0.01647800944442679 PGKGGWTV 8 Unmodified _PGKGGWTV_ 0 0 0 REV__ENST00000376572.7_1_1:11980159-11980375:-|nuORF REV__ENST00000376572.7_1_1:11980159-11980375:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.4231567382812 1 801.425365 800.418088 1.0734 0.00086027 -0.83314 -0.0006677 0.24028 0.00019257 801.4246450334663 65.976 0.52268 59.8 59.594 60.117 -6.1757 47 30 2 0 0 0 0.70294 1 42764 42764 16.942 0 1 16545000 + 45462 26228 30255 30995 53423 53423 0.009895750087594024 PGKKKLFAR 9 Unmodified _PGKKKLFAR_ 0 0 0 REV__nc|ENSG00000142655|O75381-2|PEX14 REV__nc|ENSG00000142655|O75381-2|PEX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8389892578125 2 522.837468 1043.66038 1.6535 0.00086452 0.3539 0.00018503 2.0074 0.0010495 522.8375044069348 109.56 2.8772 103.38 100.94 103.82 -6.1757 1186 553 3 0 0 0 0.61381 4 72592 72592;72805;72911;73123 0.52476 0.52476 1 10843000 + 45463 29673 30256 30996 53424;53425;53426;53427 53424 0.1403002508473037 PGKLGKRLHP 10 Unmodified _PGKLGKRLHP_ 0 0 0 REV__nc|ENSG00000170469|Q86W54-2|SPATA24 REV__nc|ENSG00000170469|Q86W54-2|SPATA24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2326049804688 3 368.232975 1101.6771 0.13397 4.9332E-05 0.169 6.223E-05 0.30297 0.00011156 368.23301525086606 24.048 0.19904 24.069 23.944 24.143 0.021185 18 7 3 0 0 0 0.64183 1 12394 12394 8.9762 0 1 7317000 + 45464 29774 30257 30997 53428 53428 0.1303252597069786 PGKLKIKELR 10 Unmodified _PGKLKIKELR_ 0 0 0 nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-3|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF nc|ENSG00000163075|Q4G0U5-2|CFAP221 nc|ENSG00000163075|Q4G0U5-2|CFAP221 MSMS AL20221201_MKP_PDAC_01 4 591.3894653320312 2 591.390065 1180.76558 NaN NaN NaN NaN NaN NaN NaN 104.36 1 98.179 97.679 98.679 -6.1757 0 0 0 0.99248 1 69892 69892 1.4819 0 1 45465 6948 30258 30998 53429 53429 0.18242521490492436 PGKNNKPV 8 Unmodified _PGKNNKPV_ 0 0 0 REV__ENSG00000155660|ENST00000652332|PDIA4 REV__ENSG00000155660|ENST00000652332|PDIA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.5239562988281 2 427.248152 852.481751 -0.56386 -0.00024091 0.42488 0.00018153 -0.13897 -5.9377E-05 427.24836338122145 15.973 0.20935 15.973 15.866 16.076 0 115 48 3 0 0 0 0.80232 1 7694 7694 5.2307 0.90143 1 2613200 + 45466 21280 30259 30999 53430 53430 0.0496093544585392 PGKRILVL 8 Unmodified _PGKRILVL_ 0 0 0 ENSG00000151657|ENST00000379562|KIN;nc|ENSG00000151657|O60870-2|KIN ENSG00000151657|ENST00000379562|KIN ENSG00000151657|ENST00000379562|KIN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.232421875 2 448.308013 894.601472 0.82287 0.0003689 -0.90964 -0.0004078 -0.086773 -3.8901E-05 448.30752560026815 40.492 0.18951 40.497 40.382 40.571 0.0050545 12 8 2 0 0 0 8.7369 1 21557 21557 4.756 0 1 1578700 45467 6133 30260 31000 53431 53431 0.1499554879039806 PGKSGGWL 8 Unmodified _PGKSGGWL_ 0 0 0 REV__ENST00000571698.2_2_17:44249328-44271124:-|nuORF REV__ENST00000571698.2_2_17:44249328-44271124:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2163391113281 2 401.216321 800.418088 0.84898 0.00034063 -0.18696 -7.5011E-05 0.66203 0.00026562 401.2161890468973 65.969 0.76936 59.793 59.51 60.28 -6.1757 89 44 3 0 0 0 0.5284 1 42991 42991 32.117 0 1 70240000 + 45468 25020 30261 31001 53432 53432 0.009895750087480337 PGKTKKEKR 9 Unmodified _PGKTKKEKR_ 0 0 0 REV__nc|ENSG00000149582|Q86YD3-4|TMEM25 REV__nc|ENSG00000149582|Q86YD3-4|TMEM25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.0186157226562 2 536.33529 1070.65603 1.4844 0.00079612 0.86399 0.00046339 2.3484 0.0012595 536.8384737775887 109.66 0.10616 103.49 103.42 103.52 -6.1757 32 23 2 0 0 0 0.21893 1 73245 73245 0.52476 0 1 1811700 + 45469 21007 30262 31002 53433 53433 0.12352515871180003 PGLAKAEA 8 Unmodified _PGLAKAEA_ 0 0 0 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.717041015625 2 378.716153 755.417754 NaN NaN NaN NaN NaN NaN NaN 39.516 1 39.528 39.028 40.028 0.011452 0 0 0 0.97444 1 21050 21050 2.3027 0 1 45470 3913 30263 31003 53434 53434 0.030261552888873666 PGLEFPGPF 9 Unmodified _PGLEFPGPF_ 0 0 0 ENST00000261402.6_1_12:106532584-106533082:-|nuORF ENST00000261402.6_1_12:106532584-106533082:-|nuORF ENST00000261402.6_1_12:106532584-106533082:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7459716796875 2 480.744911 959.475269 NaN NaN NaN NaN NaN NaN NaN 78.135 1 78.135 77.635 78.635 0 0 0 0 0.7243 1 43428 43428 8.5933 0 1 45471 11240 30264 31004 53435 53435 -0.006090025055186743 PGLHETPPHL 10 Unmodified _PGLHETPPHL_ 0 0 0 REV__ENST00000330914.7_1_6:30689442-30689583:+|nuORF REV__ENST00000330914.7_1_6:30689442-30689583:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1952209472656 3 366.529458 1096.56654 -0.82695 -0.0003031 0.61603 0.00022579 -0.21092 -7.7308E-05 366.5296225223228 30.362 0.24085 30.362 30.222 30.463 0 26 11 3 0 0 0 0.68719 1 15709 15709 2.086 0 1 4918400 + 45472 25598 30265 31005 53436 53436 0.022122611917893664 PGLIREMMAL 10 Unmodified _PGLIREMMAL_ 0 0 0 REV__ENSG00000013441|ENST00000321356|CLK1;REV__ENSG00000113240|ENST00000316308|CLK4;REV__nc|ENSG00000176444|P49760-3|CLK2 REV__ENSG00000013441|ENST00000321356|CLK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8748779296875 3 377.5402 1129.59877 -0.52948 -0.0001999 2.2862 0.00086315 1.7568 0.00066325 377.5411594184672 19.156 0.12799 19.179 19.125 19.253 0.023106 8 6 2 0 0 0 0.69917 1 9653 9653 1.4551 0 1 207180 + 45473 17075;18856;22931 30266 31006 53437 53437 0.039155892789267455 PGLKFSFL 8 Unmodified _PGLKFSFL_ 0 0 0 ENSG00000149633|ENST00000279024|KIAA1755 ENSG00000149633|ENST00000279024|KIAA1755 ENSG00000149633|ENST00000279024|KIAA1755 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.7664184570312 2 454.765646 907.516739 NaN NaN NaN NaN NaN NaN NaN 83.444 1 82.946 82.446 83.446 -0.49751 0 0 0 0.97444 1 45675 45675 0.79363 0 1 45474 6026 30267 31007 53438 53438 0.05928178253816441 PGLLFHGL 8 Unmodified _PGLLFHGL_ 0 0 0 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 REV__nc|ENSG00000182329|Q0VF49|KIAA2012 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2499694824219 2 427.250163 852.485774 0.41749 0.00017837 -2.4543 -0.0010486 -2.0368 -0.00087023 427.24936225729743 16.833 0.29843 14.276 14.1 14.398 -2.557 103 48 3 0 0 0 0.5245 1 8711 8711 32.454 0 1 10382000 + 45475 23262 30268 31008 53439 53439 0.05363024939561001 PGLPPATAPL 10 Unmodified _PGLPPATAPL_ 0 0 0 ENSG00000104899|ENST00000221496|AMH ENSG00000104899|ENST00000221496|AMH ENSG00000104899|ENST00000221496|AMH MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7766723632812 2 467.273835 932.533118 0.53307 0.00024909 -1.428 -0.00066725 -0.89489 -0.00041816 467.2738144722829 44.353 1.0335 39.501 39.215 40.249 -4.852 145 76 3 0 0 0 0.57332 1 27390 27390 12.532 0 1 70054000 45476 2256 30269 31009 53440 53440 0.0641525941987311 PGLPQLSL 8 Unmodified _PGLPQLSL_ 0 0 0 REV__ENST00000564907.5_1_16:57697518-57697860:+|nuORF REV__ENST00000564907.5_1_16:57697518-57697860:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7466430664062 2 412.747453 823.480354 NaN NaN NaN NaN NaN NaN NaN 73.092 1 72.616 72.116 73.116 -0.47588 0 0 0 0.95607 1 39998 39998 9.3474 0.75416 1 + 45477 28901 30270 31010 53441 53441 0.06155301357091503 PGLRHPCP 8 Unmodified _PGLRHPCP_ 0 0 0 REV__ENSG00000128805|ENST00000249601|ARHGAP22 REV__ENSG00000128805|ENST00000249601|ARHGAP22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7288513183594 2 438.729072 875.443591 -0.28919 -0.00012688 0.16099 7.063E-05 -0.1282 -5.6247E-05 438.72909689062266 25.59 0.39655 25.59 25.486 25.883 0 33 18 2 0 0 0 0.78849 2 13117 13117;13215 9.3474 0 1 1347300 + 45478 19634 30271 31011 53442;53443 53442 0.0008872625952562885 PGLRPLIY 8 Unmodified _PGLRPLIY_ 0 0 0 REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF REV__ENST00000333172.10_1_1:6639007-6639235:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7847290039062 2 464.78437 927.554188 0.12146 5.6453E-05 0.50134 0.00023302 0.6228 0.00028947 464.78462644363066 34.613 0.19296 34.64 34.52 34.713 0.027401 18 8 3 0 0 0 0.72953 1 18258 18258 14.582 0 1 5569400 + 45479 25620 30272 31012 53444 53444 0.08751269519427751 PGLRVFRGA 9 Unmodified _PGLRVFRGA_ 0 0 0 ENST00000406610.6_2_2:205410550-205550968:+|nuORF ENST00000406610.6_2_2:205410550-205550968:+|nuORF ENST00000406610.6_2_2:205410550-205550968:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7518310546875 2 486.790518 971.566484 1.6961 0.00082564 -2.4855 -0.0012099 -0.78938 -0.00038426 486.789102957509 41.759 0.34622 37.151 36.999 37.345 -4.6079 29 21 2 0 0 0 0.19298 1 25025 25025 8.5933 6.2905 1 5396400 45480 12933 30273 31013 53445 53445 0.07956305982463618 PGLSRLTTV 9 Unmodified _PGLSRLTTV_ 0 0 0 ENST00000369095.5_1_1:150254991-150255691:+|nuORF ENST00000369095.5_1_1:150254991-150255691:+|nuORF ENST00000369095.5_1_1:150254991-150255691:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2821350097656 2 472.282192 942.549831 -0.083808 -3.9581E-05 1.5462 0.00073025 1.4624 0.00069067 472.28263237500767 23.046 0.18882 23.046 22.938 23.126 0 15 9 2 0 0 0 0.34999 1 11721 11721 14.838 1.3304 1 560300 45481 12295 30274 31014 53446 53446 0.07625760305847962 PGLSRLTTV 9 Unmodified _PGLSRLTTV_ 0 0 0 ENST00000369095.5_1_1:150254991-150255691:+|nuORF ENST00000369095.5_1_1:150254991-150255691:+|nuORF ENST00000369095.5_1_1:150254991-150255691:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 472.282192 942.549831 0.23001 0.00010863 0.60206 0.00028434 0.83207 0.00039297 472.2821117575293 26.281 0.10846 23.33 23.281 23.39 -2.9511 0.14206 -0.00056812 NaN 14.838 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2861600 45482 12295 30274 31014 0.07625760305847962 PGLSYRWL 8 Unmodified _PGLSYRWL_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2;ENST00000530117.5_1_1:205027631-205031234:+|nuORF ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MSMS AL20221201_MKP_PDAC_01 4 496.2736511230469 2 496.271627 990.528701 NaN NaN NaN NaN NaN NaN NaN 51.938 1 46.203 45.703 46.703 -5.7345 0 0 0 0.57076 1 32736 32736 36.044 3.7387 1 45483 9223 30275 31015 53447 53447 0.033057949969816036 PGLTVPAASQ 10 Unmodified _PGLTVPAASQ_ 0 0 0 ENSG00000204612|ENST00000376708|FOXB2 ENSG00000204612|ENST00000376708|FOXB2 ENSG00000204612|ENST00000376708|FOXB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7591857910156 2 470.758549 939.502546 -0.53548 -0.00025208 3.733 0.0017573 3.1975 0.0015052 470.7607068127637 77.35 0.2293 76.868 76.803 77.032 -0.4826 15 10 2 0 0 0 0.21571 1 42333 42333 25.399 3.6527 1 1591500 45484 10309 30276 31016 53448 53448 0.030374810348462233 PGLWGRREQVL 11 Unmodified _PGLWGRREQVL_ 0 0 0 ENST00000480230.5_1_2:241465198-241465285:-|nuORF;ENST00000373318.6_1_2:241465198-241494298:-|nuORF;ENST00000484526.5_1_2:241465198-241500367:-|nuORF ENST00000480230.5_1_2:241465198-241465285:-|nuORF ENST00000480230.5_1_2:241465198-241465285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5828857421875 3 437.582444 1309.7255 1.5662 0.00068534 -0.62584 -0.00027386 0.94035 0.00041148 437.5820397481264 46.728 0.2848 46.695 46.529 46.814 -0.033421 34 13 4 0 0 0 0.65846 1 25160 25160 6.6235 3.3038 1 4882400 45485 12409 30277 31017 53449 53449 0.08302974819935116 PGLWITPAH 9 Unmodified _PGLWITPAH_ 0 0 0 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 nc|ENSG00000180525|Q8N8Z3|DIP2C-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2720336914062 2 496.271627 990.528701 0.9715 0.00048213 -0.58834 -0.00029198 0.38316 0.00019015 496.27131754520866 46.283 0.43406 46.25 46.038 46.472 -0.033417 57 20 4 0 0 0 0.2001 1 24949 24949 23.148 1.4018 1 93167000 45486 16424 30278 31018 53450 53450 0.03305794996970235 PGLWLLLLAR 10 Unmodified _PGLWLLLLAR_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.8654479980469 3 384.581493 1150.72265 1.2989 0.00049955 1.8487 0.00071096 3.1476 0.0012105 384.9167184619523 42.875 0.099541 38.191 38.142 38.241 -4.6846 9 6 2 0 0 0 0.2399 1 25942 25942 0.69767 0 1 4591400 45487 3660 30279 31019 53451 53451 0.15331751433086538 PGLYYFTY 8 Unmodified _PGLYYFTY_ 0 0 0 ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB ENSG00000173369|ENST00000509305|C1QB ENSG00000173369|ENST00000509305|C1QB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2447509765625 2 512.244744 1022.47493 NaN NaN NaN NaN NaN NaN NaN 51.567 1 51.146 50.646 51.646 -0.4213 0 0 0 0.95201 1 27811 27811 10.183 0 1 45488 8318 30280 31020 53452 53452 -0.03540422225398743 PGMASFVTSN 10 Unmodified _PGMASFVTSN_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7349243164062 2 505.734217 1009.45388 0.69713 0.00035256 0.017077 8.6367E-06 0.71421 0.0003612 505.7345604889445 30.177 0.22694 26.68 26.553 26.78 -3.497 15 10 2 0 0 0 0.16524 1 17027 17027 37.974 1.9298 1 9560500 45489 7748 30281 31021 53453 53453 -0.05046755596549701 PGMPDFRNGT 10 Unmodified _PGMPDFRNGT_ 0 0 0 nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-3|ADCY10 nc|ENSG00000143199|Q96PN6-3|ADCY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5025329589844 3 364.502803 1090.48658 -0.019202 -6.9992E-06 -1.4973 -0.00054575 -1.5165 -0.00055275 364.5025275815481 65.314 0.55472 65.314 65.093 65.648 0 34 21 3 0 0 0 0.69377 1 36450 36450 1.7423 0 1 1331900 45490 16239 30282 31022 53454 53454 -0.055045484736865546 PGMPRDPW 8 Unmodified _PGMPRDPW_ 0 0 0 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 ENSG00000169105|ENST00000306243|CHST14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2265625 2 478.226362 954.438172 NaN NaN NaN NaN NaN NaN NaN 88.763 1 88.259 87.759 88.759 -0.50423 0 0 0 0.97444 1 48542 48542 0.79363 0 1 45491 7836 30283 31023 53455 53455 -0.04086997322951902 PGMYTCMTS 9 Unmodified _PGMYTCMTS_ 0 0 0 ENST00000481254.1_1_9:35074849-35075035:-|nuORF ENST00000481254.1_1_9:35074849-35075035:-|nuORF ENST00000481254.1_1_9:35074849-35075035:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.6907958984375 2 495.690106 989.36566 0.59492 0.00029489 1.1699 0.0005799 1.7648 0.00087479 495.69064907579957 44.241 0.44238 39.389 39.172 39.614 -4.852 90 31 4 0 0 0 0.48152 1 27030 27030 8.5933 2.2392 1 60325000 45492 14079 30284 31024 53456 53456 -0.12944835503037666 PGNDGTFWLF 10 Unmodified _PGNDGTFWLF_ 0 0 0 REV__ENSG00000141337|ENST00000621439|ARSG REV__ENSG00000141337|ENST00000621439|ARSG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7633056640625 2 577.269281 1152.52401 -0.27442 -0.00015841 2.4299 0.0014027 2.1554 0.0012443 577.2706963468529 56.662 0.27825 56.177 56.071 56.349 -0.48554 21 15 2 0 0 0 0.23117 1 30739 30739 7.2892 3.6927 1 3281300 + 45493 20527 30285 31025 53457 53457 -0.046151339364541855 PGNVQYGDTCH 11 Unmodified _PGNVQYGDTCH_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.5024719238281 3 397.50135 1189.48222 1.3393 0.00053238 0.38946 0.00015481 1.7288 0.00068719 397.50155686885796 21.408 0.2728 18.673 18.485 18.757 -2.7348 42 26 2 0 0 0 0.71036 1 11413 11413 1.3296 0 1 7601000 + 45494 22772 30286 31026 53458 53458 -0.10494057687265013 PGPAAWEG 8 Unmodified _PGPAAWEG_ 0 0 0 nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446;ENST00000391694.4_1_19:58989172-58992090:+|nuORF nc|ENSG00000083838|Q9NWS9-2|ZNF446 nc|ENSG00000083838|Q9NWS9-2|ZNF446 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.6856689453125 2 392.684853 783.355153 0.88696 0.0003483 0.78378 0.00030778 1.6707 0.00065608 392.68501760324875 71.301 0.42201 71.34 71.068 71.49 0.039024 30 18 2 0 0 0 0.80676 1 39229 39229 2.5775 0 1 2801000 45495 1376 30287 31027 53459 53459 -0.04518990779286014 PGPAEEPF 8 Unmodified _PGPAEEPF_ 0 0 0 REV__ENSG00000105464|ENST00000263269|GRIN2D REV__ENSG00000105464|ENST00000263269|GRIN2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.5333251953125 2 422.197793 842.381034 NaN NaN NaN NaN NaN NaN NaN 76.581 1 76.102 75.602 76.602 -0.47945 0 0 0 0.97444 1 41927 41927 2.8892 2.0956 1 + 45496 18427 30288 31028 53460 53460 -0.04646141327668829 PGPAVPKA 8 Unmodified _PGPAVPKA_ 0 0 0 REV__ENSG00000253276|ENST00000523505|CCDC71L REV__ENSG00000253276|ENST00000523505|CCDC71L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.7212829589844 2 368.721239 735.427924 -0.044654 -1.6465E-05 0.05335 1.9671E-05 0.0086961 3.2065E-06 368.72122604540505 76.643 0.35278 76.163 76.012 76.365 -0.47945 49 22 3 0 0 0 0.80143 1 42009 42009 5.7604 0.52976 1 4974600 + 45497 24508 30289 31029 53461 53461 0.049627630141344525 PGPGDLSIY 9 Unmodified _PGPGDLSIY_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7320251464844 2 459.732 917.449448 0.35911 0.00016509 0.4186 0.00019245 0.77771 0.00035754 459.7320434968522 43.558 0.18462 43.558 43.399 43.583 0 13 8 2 0 0 0 0.18465 1 23625 23625 24.674 2.9272 1 4473900 45498 7710 30290 31030 53462 53462 -0.012578967478020786 PGPGDVFF 8 Unmodified _PGPGDVFF_ 0 0 0 ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR ENSG00000107738|ENST00000394957|VSIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2043762207031 2 418.202879 834.391205 0.73694 0.00030819 1.4156 0.000592 2.1525 0.00090019 418.20345823089076 81.577 0.62244 81.081 80.747 81.369 -0.4952 65 25 3 0 0 0 0.80624 1 44569 44569 2.8892 0 1 1504000 45499 2513 30291 31031 53463 53463 -0.032615336024150565 PGPGKKLL 8 Unmodified _PGPGKKLL_ 0 0 0 REV__nc|ENSG00000043514|Q9H3H1-4|TRIT1 REV__nc|ENSG00000043514|Q9H3H1-4|TRIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.5260620117188 1 809.52435 808.517074 1.8885 0.0015288 0.37152 0.00030075 2.26 0.0018296 809.5245352611224 108.73 2.8226 102.55 100.95 103.77 -6.1757 995 538 2 0 0 0 0.80975 9 72186 72186;72293;72407;72513;72723;72829;72933;73145;73250 0.79363 0 1 15613000 + 45500 29490 30292 31032 53464;53465;53466;53467;53468;53469;53470;53471;53472 53464 0.1051559797366508 PGPGPGRLPPR 11 Unmodified _PGPGPGRLPPR_ 0 0 0 REV__ENST00000498522.5_1_9:35605559-35607650:+|nuORF REV__ENST00000498522.5_1_9:35605559-35607650:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5492553710938 3 367.548964 1099.62506 0.83046 0.00030523 0.036994 1.3597E-05 0.86745 0.00031883 367.54876526862495 23.886 0.37588 21.058 20.855 21.231 -2.8273 35 22 2 0 0 0 0.56638 1 12906 12906 7.0371 0 1 3195400 + 45501 18551 30293 31033 53473 53473 0.07923362556925895 PGPGVLHF 8 Unmodified _PGPGVLHF_ 0 0 0 REV__ENST00000244007.7_1_20:39803326-39803581:+|nuORF REV__ENST00000244007.7_1_20:39803326-39803581:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.22802734375 2 412.226688 822.438824 1.0851 0.00044731 0.061033 2.516E-05 1.1461 0.00047247 412.2266179283356 98.537 0.20355 92.361 92.237 92.441 -6.1757 35 14 3 0 0 0 0.61999 1 65331 65331 24.21 0 1 66395000 + 45502 24851 30294 31034 53474 53474 0.02050165388413916 PGPIPVPAP 9 Unmodified _PGPIPVPAP_ 0 0 0 ENSG00000166484|ENST00000395604|MAPK7;nc|ENSG00000166484|Q13164-2|MAPK7;ENST00000570306.5_1_17:19284999-19286541:+|nuORF ENSG00000166484|ENST00000395604|MAPK7 ENSG00000166484|ENST00000395604|MAPK7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.8777770996094 2 422.749996 843.485439 1.4226 0.00060142 -2.0786 -0.00087873 -0.65598 -0.00027732 422.749254623097 55.495 0.060345 49.574 49.543 49.603 -5.9211 5 3 2 0 0 0 0.203 1 35323 35323 5.2307 0 1 4395900 45503 7499 30295 31035 53475 53475 0.05743605219697656 PGPLARLSDPI 11 Unmodified _PGPLARLSDPI_ 0 0 0 REV__ENSG00000064218|ENST00000190165|DMRT3 REV__ENSG00000064218|ENST00000190165|DMRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.220703125 3 379.220513 1134.63971 NaN NaN NaN NaN NaN NaN NaN 18.802 1 18.825 18.325 19.325 0.023106 0 0 0 0.93893 1 9452 9452 1.3296 0.36737 1 + 45504 17351 30296 31036 53476 53476 0.07777389914440391 PGPLARRS 8 Unmodified _PGPLARRS_ 0 0 0 REV__ENSG00000180929|ENST00000322241|GPR62 REV__ENSG00000180929|ENST00000322241|GPR62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.254638671875 2 427.253769 852.492984 0.10296 4.3991E-05 0.85248 0.00036423 0.95545 0.00040822 427.25415470569874 15.74 0.28845 15.746 15.643 15.932 0.0057774 53 24 3 0 0 0 0.80722 1 7830 7830 2.3027 0 1 2269600 + 45505 23177 30297 31037 53477 53477 0.06083757540000079 PGPLPLHF 8 Unmodified _PGPLPLHF_ 0 0 0 REV__ENSG00000132763|ENST00000401061|MMACHC REV__ENSG00000132763|ENST00000401061|MMACHC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2481079101562 2 439.250163 876.485774 -0.34609 -0.00015202 -2.6349 -0.0011574 -2.981 -0.0013094 439.2488304335176 36.905 0.24199 36.655 36.531 36.773 -0.2497 15 10 2 0 0 0 0.70131 1 19402 19402 17.087 5.9721 1 1571500 + 45506 19879 30298 31038 53478 53478 0.04259024939563005 PGPLPLHF 8 Unmodified _PGPLPLHF_ 0 0 0 REV__ENSG00000132763|ENST00000401061|MMACHC REV__ENSG00000132763|ENST00000401061|MMACHC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 439.250163 876.485774 0.69852 0.00030683 -4.0373 -0.0017734 -3.3388 -0.0014666 439.24853638647875 36.687 0.14678 36.687 36.628 36.775 0 0.015605 -0.00056304 NaN 17.087 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 658350 + 45507 19879 30298 31038 0.04259024939563005 PGPLPLHF 8 Unmodified _PGPLPLHF_ 0 0 0 REV__ENSG00000132763|ENST00000401061|MMACHC REV__ENSG00000132763|ENST00000401061|MMACHC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 439.250163 876.485774 -0.34609 -0.00015202 -2.6349 -0.0011574 -2.981 -0.0013094 439.2488304335176 36.905 0.24199 36.655 36.531 36.773 -0.2497 -0.015605 0.000669 NaN 17.087 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1571500 + 45508 19879 30298 31038 0.04259024939563005 PGPLVPPDQQ 10 Unmodified _PGPLVPPDQQ_ 0 0 0 nc|ENSG00000090615|Q08378-4|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;ENSG00000090615|ENST00000450791|GOLGA3 nc|ENSG00000090615|Q08378-4|GOLGA3 nc|ENSG00000090615|Q08378-4|GOLGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2783203125 2 524.277106 1046.53966 0.47226 0.00024759 1.2053 0.00063193 1.6776 0.00087953 524.2777352408011 82.123 0.35007 82.123 81.985 82.335 0 27 16 2 0 0 0 0.69377 1 45577 45577 3.5965 0 1 397060 45509 1563 30299 31039 53479 53479 0.01825152580613576 PGPPDHVVLQ 10 Unmodified _PGPPDHVVLQ_ 0 0 0 ENST00000472001.1_1_1:179052075-179052156:+|nuORF ENST00000472001.1_1_1:179052075-179052156:+|nuORF ENST00000472001.1_1_1:179052075-179052156:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7807006835938 2 529.785099 1057.55564 0.43022 0.00022792 -1.9668 -0.001042 -1.5366 -0.00081406 529.7825812846288 65.329 0.85535 59.153 58.868 59.723 -6.1757 114 49 4 0 0 0 0.38092 1 42607 42607 22.736 3.4793 1 104900000 45510 13891 30300 31040 53480 53480 0.029168588175252808 PGPPSDAVF 9 Unmodified _PGPPSDAVF_ 0 0 0 ENSG00000163395|ENST00000335211|IGFN1;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1;ENST00000473483.1_1_1:201186566-201195005:+|nuORF ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7188415527344 2 443.718893 885.423233 1.3305 0.00059038 0.23739 0.00010533 1.5679 0.00069571 443.71861960889294 37.272 0.83136 32.989 32.455 33.286 -4.2835 81 50 2 0 0 0 0.37804 1 21702 21702 13.508 1.8676 1 11639000 45511 6988 30301 31041 53481 53481 -0.024061659192852858 PGPRRIGI 8 Unmodified _PGPRRIGI_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 433.2543029785156 2 433.271961 864.52937 1.2502 0.00054166 -1.4987 -0.00064935 -0.24855 -0.00010769 433.2713278504771 20.295 0.21622 17.602 17.525 17.742 -2.693 18 12 2 0 0 0 8.7369 1 10801 10801 13.508 0 1 1227400 45512 16348 30302 31042 53482 53482 0.09168634436707634 PGPSEAVQDP 10 Unmodified _PGPSEAVQDP_ 0 0 0 ENST00000530471.1_3_11:45826723-45827525:+|nuORF ENST00000530471.1_3_11:45826723-45827525:+|nuORF ENST00000530471.1_3_11:45826723-45827525:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.4599609375 1 996.463266 995.45599 -0.072128 -7.1873E-05 -0.29079 -0.00028976 -0.36292 -0.00036164 996.4629316251568 56.708 0.35986 56.708 56.495 56.855 0 26 15 2 0 0 0 0.36296 2 31583 31481;31583 23.79 2.7169 1 2092600 45513 14891 30303 31043 53483;53484 53484 -0.041920035870930406 PGPSRNLL 8 Unmodified _PGPSRNLL_ 0 0 0 ENST00000002596.5_1_4:11430368-11430548:-|nuORF ENST00000002596.5_1_4:11430368-11430548:-|nuORF ENST00000002596.5_1_4:11430368-11430548:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2480773925781 2 427.248152 852.481751 -0.56386 -0.00024091 0.42488 0.00018153 -0.13897 -5.9377E-05 427.24836338122145 15.973 0.20935 15.973 15.866 16.076 0 115 48 3 0 0 0 0.71527 1 7704 7704 15.847 0 1 2613200 45514 10961 30304 31044 53485 53485 0.04960935445865289 PGPSRNLL 8 Unmodified _PGPSRNLL_ 0 0 0 ENST00000002596.5_1_4:11430368-11430548:-|nuORF ENST00000002596.5_1_4:11430368-11430548:-|nuORF ENST00000002596.5_1_4:11430368-11430548:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 427.2482299804688 2 427.248152 852.481751 NaN NaN NaN NaN NaN NaN NaN 16.945 1 14.358 13.858 14.858 -2.5866 0 0 0 0.92452 1 8818 8818 15.847 0 1 45515 10961 30304 31044 53486 53486 0.04960935445865289 PGPWGLVK 8 Unmodified _PGPWGLVK_ 0 0 0 ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM ENSG00000182253|ENST00000336292|SYNM ENSG00000182253|ENST00000336292|SYNM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.24853515625 2 427.250163 852.485774 NaN NaN NaN NaN NaN NaN NaN 16.028 1 16.033 15.533 16.533 0.0050564 0 0 0 0.95973 1 8017 8017 8.5933 1.8701 1 45516 9036 30305 31045 53487 53487 0.05363024939561001 PGQALRQL 8 Unmodified _PGQALRQL_ 0 0 0 REV__ENST00000452600.1_1_2:130988892-130989183:+|nuORF REV__ENST00000452600.1_1_2:130988892-130989183:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.760986328125 2 441.761426 881.5083 NaN NaN NaN NaN NaN NaN NaN 31.034 1 31.034 30.534 31.534 0 0 0 0 0.63034 1 16150 16150 32.117 3.6301 1 + 45517 27220 30306 31046 53488 53488 0.06280624337171048 PGQDPVLV 8 Unmodified _PGQDPVLV_ 0 0 0 nc|ENSG00000211667|A0A075B6K2|IGLV3-12 nc|ENSG00000211667|A0A075B6K2|IGLV3-12 nc|ENSG00000211667|A0A075B6K2|IGLV3-12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7294616699219 2 412.729261 823.443968 0.49578 0.00020462 -0.14526 -5.9952E-05 0.35052 0.00014467 412.7291476460926 86.286 0.42474 85.782 85.595 86.02 -0.50318 30 17 2 0 0 0 0.76266 1 47281 47281 11.64 0 1 880390 45518 16524 30307 31047 53489 53489 0.02518424460379265 PGQKTPTL 8 Unmodified _PGQKTPTL_ 0 0 0 nc|ENSG00000196243|Q96LM1|LINC00615 nc|ENSG00000196243|Q96LM1|LINC00615 nc|ENSG00000196243|Q96LM1|LINC00615 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2428894042969 2 421.242535 840.470518 0.08807 3.7099E-05 -0.15938 -6.7139E-05 -0.071312 -3.004E-05 421.2421783519333 20.877 0.18629 20.888 20.741 20.928 0.010551 14 9 2 0 0 0 0.57045 1 10655 10655 28.487 0 1 876680 45519 16477 30308 31048 53490 53490 0.04390113351701075 PGQLPLLCSER 11 Unmodified _PGQLPLLCSER_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8291625976562 2 606.823898 1211.63324 0.47991 0.00029122 2.5518 0.0015485 3.0318 0.0018397 606.8265646409978 67.497 0.38686 67.015 66.802 67.189 -0.48218 28 16 3 0 0 0 0.37677 1 36825 36825 22.736 0.98964 1 6373400 45520 8564 30309 31049 53491 53491 0.03589128691373844 PGQLRQRPL 9 Unmodified _PGQLRQRPL_ 0 0 0 REV__ENST00000551245.5_1_12:49717808-49719298:+|nuORF REV__ENST00000551245.5_1_12:49717808-49719298:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5494995117188 3 355.548964 1063.62506 1.4316 0.00050899 -0.39733 -0.00014127 1.0342 0.00036772 355.54876607160355 28.885 0.57835 25.711 25.332 25.91 -3.1745 80 30 3 0 0 0 0.32235 1 16108 16108 16.149 0 1 282420000 + 45521 28712 30310 31050 53492 53492 0.09579362556928572 PGQLRVLAI 9 Unmodified _PGQLRVLAI_ 0 0 0 REV__ENSG00000164099|ENST00000296498|PRSS12 REV__ENSG00000164099|ENST00000296498|PRSS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.8092651367188 2 483.808377 965.6022 1.5664 0.00075784 -0.30247 -0.00014634 1.2639 0.0006115 483.80820271607877 50.167 0.304 50.119 50.006 50.31 -0.048828 23 14 3 0 0 0 0.32871 1 27139 27139 15.847 0 1 1657200 + 45522 21867 30311 31051 53493 53493 0.11802343439444485 PGQREQVL 8 Unmodified _PGQREQVL_ 0 0 0 ENST00000265132.7_1_9:116823209-116823275:-|nuORF ENST00000265132.7_1_9:116823209-116823275:-|nuORF ENST00000265132.7_1_9:116823209-116823275:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.2356872558594 2 463.756341 925.498129 0.20845 9.6671E-05 -0.68622 -0.00031824 -0.47777 -0.00022157 463.7563287113513 24 0.29937 21.173 21.024 21.323 -2.8273 35 16 3 0 0 0 8.7369 1 12969 12969 18.135 0 1 3984700 45523 11326 30312 31052 53494 53494 0.03240016611948704 PGQRVVVV 8 Unmodified _PGQRVVVV_ 0 0 0 nc|ENSG00000198931|P07741-2|APRT;ENSG00000198931|ENST00000378364|APRT;ENST00000567057.5_1_16:88876112-88876655:-|nuORF;ENST00000568575.1_1_16:88876108-88876655:-|nuORF nc|ENSG00000198931|P07741-2|APRT nc|ENSG00000198931|P07741-2|APRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2662963867188 2 427.266345 852.518136 0.44768 0.00019128 -0.11283 -4.8209E-05 0.33485 0.00014307 427.26617223630575 36.846 0.20624 36.846 36.71 36.916 0 15 9 2 0 0 0 0.74163 1 19589 19589 13.508 0 1 912850 45524 10201 30313 31053 53495 53495 0.08597812342566158 PGQTAIYVK 9 Unmodified _PGQTAIYVK_ 0 0 0 REV__nc|ENSG00000110786|P54829-2|PTPN5;REV__ENSG00000143851|ENST00000691036|PTPN7 REV__ENSG00000143851|ENST00000691036|PTPN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7771911621094 2 488.776742 975.538931 0.56504 0.00027618 -1.0472 -0.00051185 -0.48216 -0.00023567 488.7760134466242 92.77 0.2881 92.313 92.109 92.397 -0.4574 20 12 2 0 0 0 0.51218 1 50648 50648 6.7232 1.9672 1 821700 + 45525 18722;20676 30314 31054 53496 53496 0.050183579315557836 PGQTAIYVK 9 Unmodified _PGQTAIYVK_ 0 0 0 REV__nc|ENSG00000110786|P54829-2|PTPN5;REV__ENSG00000143851|ENST00000691036|PTPN7 REV__ENSG00000143851|ENST00000691036|PTPN7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.776742 975.538931 0.56504 0.00027618 -1.0472 -0.00051185 -0.48216 -0.00023567 488.7760134466242 92.77 0.2881 92.313 92.109 92.397 -0.4574 0.026968 -0.00092521 NaN 6.7232 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 821700 + 45526 18722;20676 30314 31054 0.050183579315557836 PGQVAPLV 8 Unmodified _PGQVAPLV_ 0 0 0 REV__ENSG00000127578|ENST00000319070|WFIKKN1 REV__ENSG00000127578|ENST00000319070|WFIKKN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.7341918945312 2 390.734346 779.454139 1.0826 0.00042303 -1.4613 -0.00057099 -0.37869 -0.00014797 390.73373713562734 71.108 0.33957 71.144 70.958 71.298 0.035507 30 14 3 0 0 0 0.80992 1 39153 39153 0.69038 0 1 1441700 + 45527 19584 30315 31055 53497 53497 0.05559032185601609 PGRANMPGYNE 11 Unmodified _PGRANMPGYNE_ 0 0 0 ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF ENSG00000050030|ENST00000055682|NEXMIF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.8504028320312 3 402.517112 1204.52951 -0.58074 -0.00023376 -1.7682 -0.00071172 -2.3489 -0.00094548 402.85081158976146 18.306 0.11382 18.306 18.247 18.361 0 21 17 2 0 0 0 0.73115 1 9092 9092 1.3296 0.87513 1 594650 45528 717 30316 31056 53498 53498 -0.06457778416256588 PGRAPLNW 8 Unmodified _PGRAPLNW_ 0 0 0 ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENST00000467201.5_1_7:100174858-100176198:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7487487792969 2 455.748319 909.482085 NaN NaN NaN NaN NaN NaN NaN 47.876 1 47.838 47.338 48.338 -0.038643 0 0 0 0.97444 1 25805 25805 5.2307 0 1 45529 13771 30317 31057 53499 53499 0.02372355165709905 PGRCSAQTY 9 Unmodified _PGRCSAQTY_ 0 0 0 ENST00000325875.7_1_9:86595721-86614632:+|nuORF ENST00000325875.7_1_9:86595721-86614632:+|nuORF ENST00000325875.7_1_9:86595721-86614632:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7220764160156 2 491.724184 981.433814 0.32329 0.00015897 -2.1428 -0.0010537 -1.8195 -0.0008947 491.7225377124051 49.199 0.44186 49.199 48.952 49.393 0 44 21 3 0 0 0 0.23158 1 27015 27015 20.454 3.5113 1 2197600 45530 11813 30318 31058 53500 53500 -0.05764506536525005 PGRDRLAI 8 Unmodified _PGRDRLAI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 449.2668762207031 2 449.266876 896.519199 NaN NaN NaN NaN NaN NaN NaN 41.645 1 37.037 36.537 37.537 -4.6079 0 0 0 0.46711 1 25040 25040 43.858 19.838 1 45531 16188 30319 31059 53501 53501 0.06680026711467235 PGRELEEI 8 Unmodified _PGRELEEI_ 0 0 0 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 REV__nc|ENSG00000186994|Q6NY19-1|KANK3 MSMS AL20221201_MKP_PDAC_01 4 471.7491149902344 2 471.748182 941.481811 NaN NaN NaN NaN NaN NaN NaN 32.847 1 28.99 28.49 29.49 -3.8562 0 0 0 0.59893 1 18775 18775 34.187 7.8461 1 + 45532 23611 30320 31060 53502 53502 0.008728906551823457 PGRGAPPF 8 Unmodified _PGRGAPPF_ 0 0 0 REV__ENST00000358024.7_1_1:205197673-205197814:+|nuORF REV__ENST00000358024.7_1_1:205197673-205197814:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.7163696289062 2 399.716488 797.418422 NaN NaN NaN NaN NaN NaN NaN 17.464 1 14.877 14.377 15.377 -2.5866 0 0 0 0.97444 1 9132 9132 2.8892 0 1 + 45533 25865 30321 31061 53503 53503 0.011609947286046918 PGRGGVLEEA 10 Unmodified _PGRGGVLEEA_ 0 0 0 ENST00000222990.7_1_7:2293201-2294050:-|nuORF ENST00000222990.7_1_7:2293201-2294050:-|nuORF ENST00000222990.7_1_7:2293201-2294050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7604370117188 2 492.759081 983.503609 1.1074 0.00054571 2.3157 0.0011411 3.4231 0.0016868 492.76071014993744 79.54 0.39163 79.051 78.796 79.188 -0.48932 26 16 2 0 0 0 0.63399 1 43547 43547 9.3831 0.035688 1 709010 45534 11041 30322 31062 53504 53504 0.011196954037586693 PGRGPLVR 8 Unmodified _PGRGPLVR_ 0 0 0 REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF REV__ENST00000339381.5_1_1:1268919-1269807:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2642822265625 2 426.264136 850.51372 0.37719 0.00016078 0.1568 6.6837E-05 0.53399 0.00022762 426.26424293476504 16.583 0.20965 14.026 13.937 14.147 -2.557 45 30 2 0 0 0 0.61462 1 8579 8579 24.674 2.2213 1 3087900 + 45535 25681 30323 31063 53505 53505 0.08248347919652588 PGRGSAAKRKK 11 Unmodified _PGRGSAAKRKK_ 0 0 0 ENSG00000167157|ENST00000372469|PRRX2 ENSG00000167157|ENST00000372469|PRRX2 ENSG00000167157|ENST00000372469|PRRX2 MSMS AL20221201_MKP_PDAC_01 4 578.3574829101562 2 578.357088 1154.69962 NaN NaN NaN NaN NaN NaN NaN 106.63 1 100.46 99.958 100.96 -6.1757 0 0 0 0.94216 1 71369 71369 0.96228 0.36078 1 45536 7580 30324 31064 53506 53506 0.12846125368309913 PGRHDIAF 8 Unmodified _PGRHDIAF_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7385559082031 2 456.737951 911.46135 0.5512 0.00025176 -0.68845 -0.00031444 -0.13725 -6.2685E-05 456.73783059301144 36.327 0.22248 32.134 31.962 32.185 -4.1928 22 12 2 0 0 0 0.40602 1 21189 21189 43.858 15.371 1 13010000 45537 1213;3902 30325 31065 53507 53507 0.0020776478603465875 PGRIRACELL 10 Unmodified _PGRIRACELL_ 0 0 0 REV__ENSG00000137040|ENST00000259569|RANBP6 REV__ENSG00000137040|ENST00000259569|RANBP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5490417480469 3 376.549976 1126.6281 NaN NaN NaN NaN NaN NaN NaN 47.582 1 47.544 47.044 48.044 -0.038643 0 0 0 0.89532 1 25642 25642 7.4771 0.37534 1 + 45538 20206 30326 31066 53508 53508 0.0698486961944127 PGRIWIGK 8 Unmodified _PGRIWIGK_ 0 0 0 ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7824096679688 2 463.782162 925.549771 0.34673 0.00016081 1.2522 0.00058077 1.599 0.00074158 463.78270216098724 31.651 0.19746 31.651 31.58 31.778 0 13 9 2 0 0 0 0.80624 1 16512 16512 2.8892 0 1 1344800 45539 14617 30327 31067 53509 53509 0.08401805096514181 PGRIWIGK 8 Unmodified _PGRIWIGK_ 0 0 0 ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 463.782162 925.549771 -0.0049324 -2.2875E-06 2.4035 0.0011147 2.3985 0.0011124 463.7830346347454 31.619 0.31936 31.49 31.38 31.699 -0.12915 -0.046539 0.00068397 NaN 2.8892 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 961430 45540 14617 30327 31067 0.08401805096514181 PGRIWIGK 8 Unmodified _PGRIWIGK_ 0 0 0 ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF ENST00000511950.1_1_4:120376187-120379216:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 463.782162 925.549771 -0.15211 -7.0546E-05 1.5308 0.00070996 1.3787 0.00063942 463.78277712871477 31.439 0.45377 31.469 31.321 31.775 0.030106 -0.067882 -0.00012548 NaN 2.8892 54 20 3 NaN NaN NaN NaN 0 NaN NaN 0 26482000 45541 14617 30327 31067 0.08401805096514181 PGRKGISL 8 Unmodified _PGRKGISL_ 0 0 0 ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1 ENST00000502453.1_1_5:32599051-32601187:+|nuORF ENST00000502453.1_1_5:32599051-32601187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2590026855469 2 414.25852 826.502486 0.89511 0.00037081 0.71517 0.00029626 1.6103 0.00066707 414.2588431947576 18.29 0.27323 15.669 15.54 15.813 -2.6215 46 21 3 0 0 0 0.60622 1 9681 9681 25.399 0 1 7262800 45542 2964 30328 31068 53510 53510 0.08229525825527162 PGRKPRRRP 9 Unmodified _PGRKPRRRP_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant nc|ENSG00000164889|P04920-2|SLC4A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3511962890625 2 560.35214 1118.68973 NaN NaN NaN NaN NaN NaN NaN 14.32 1 14.327 13.827 14.827 0.0073986 0 0 0 0.85737 1 7094 7094 0.6015 0 1 45543 7258;30165 30329 31069 53511 53511 0.13512982153588382 PGRPGLTL 8 Unmodified _PGRPGLTL_ 0 0 0 nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.7456359863281 2 405.745245 809.475937 -0.1704 -6.9139E-05 0.27592 0.00011195 0.10552 4.2816E-05 405.7453894507894 40.292 0.22083 40.292 40.17 40.391 0 16 10 2 0 0 0 0.40035 1 21641 21641 44.407 6.2558 1 1835900 45544 16127 30330 31070 53512 53512 0.06357836934171246 PGRPGLTL 8 Unmodified _PGRPGLTL_ 0 0 0 nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.7456359863281 2 405.745245 809.475937 0.60137 0.000244 0.028493 1.1561E-05 0.62986 0.00025556 405.7452053181535 40.46 0.31495 40.163 40.028 40.343 -0.29716 33 14 3 0 0 0 0.31612 1 21373 21373 53.576 6.6547 1 5426600 45545 16127 30330 31070 53513 53513 0.06357836934171246 PGRPGLTL 8 Unmodified _PGRPGLTL_ 0 0 0 nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.7459106445312 2 405.745245 809.475937 0.73111 0.00029664 -0.087435 -3.5476E-05 0.64368 0.00026117 405.74528900915726 44.598 0.4882 39.746 39.471 39.959 -4.852 67 38 2 0 0 0 0.40035 1 27255 27255 44.407 0 1 22428000 45546 16127 30330 31070 53514 53514 0.06357836934171246 PGRQWTFSP 9 Unmodified _PGRQWTFSP_ 0 0 0 REV__ENST00000451024.4_2_10:126138300-126138735:-|nuORF REV__ENST00000451024.4_2_10:126138300-126138735:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1829528808594 3 359.182169 1074.52468 1.2621 0.00045333 0.93335 0.00033524 2.1955 0.00078857 359.1825313218124 22.381 0.29484 19.605 19.48 19.775 -2.7765 29 15 3 0 0 0 0.58865 1 12039 12039 1.0715 0 1 3333300 + 45547 27205 30331 31071 53515 53515 -0.009602944967127769 PGRREFFNL 9 Unmodified _PGRREFFNL_ 0 0 0 nc|ENSG00000180113|O60522-2|TDRD6;ENSG00000180113|ENST00000316081|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 nc|ENSG00000180113|O60522-2|TDRD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.206298828125 3 379.205085 1134.59343 1.0237 0.00038818 0.37206 0.00014109 1.3957 0.00052926 379.2052672419109 43.99 0.36181 39.225 39.019 39.381 -4.7648 81 23 4 0 0 0 0.45045 1 26700 26700 6.6304 0 1 33351000 45548 8884 30332 31072 53516 53516 0.031513698029812076 PGRRSDLGL 9 Unmodified _PGRRSDLGL_ 0 0 0 REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF REV__ENST00000476701.5_1_7:4169443-4308379:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7751159667969 2 485.775065 969.535577 0.98189 0.00047698 -1.0222 -0.00049658 -0.04036 -1.9606E-05 485.7746097256929 19.32 0.29926 16.664 16.472 16.771 -2.6564 48 21 3 0 0 0 0.23158 1 10227 10227 20.454 0 1 20266000 + 45549 27598 30333 31073 53517 53517 0.0495910787755065 PGRWDPTARI 10 Unmodified _PGRWDPTARI_ 0 0 0 nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9;nc|ENSG00000113073|Q96Q91-4|SLC4A9 nc|ENSG00000113073|Q96Q91-2|SLC4A9 nc|ENSG00000113073|Q96Q91-2|SLC4A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2120666503906 3 390.21224 1167.61489 0.0021685 8.4619E-07 0.28887 0.00011272 0.29104 0.00011357 390.2123127529181 33.747 0.32765 33.776 33.604 33.931 0.028934 31 13 3 0 0 0 0.35903 1 17735 17735 20.581 7.0623 1 5196900 45550 2940 30334 31074 53518 53518 0.03778754831682818 PGSAFRGF 8 Unmodified _PGSAFRGF_ 0 0 0 ENST00000484725.1_1_4:75023915-75027541:+|nuORF;ENST00000423607.5_1_4:75023855-75040225:+|nuORF;ENST00000461101.1_1_4:75023855-75025862:+|nuORF;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L ENST00000484725.1_1_4:75023915-75027541:+|nuORF ENST00000484725.1_1_4:75023915-75027541:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7141723632812 2 419.713945 837.413337 0.44002 0.00018468 0.01311 5.5025E-06 0.45313 0.00019018 419.7141800204361 58.871 0.33539 58.81 58.607 58.943 -0.060719 24 16 2 0 0 0 0.58902 1 32045 32045 26.884 0.54238 1 2134500 45551 7059 30335 31075 53519 53519 -0.01187309133990766 PGSAFRGF 8 Unmodified _PGSAFRGF_ 0 0 0 ENST00000484725.1_1_4:75023915-75027541:+|nuORF;ENST00000423607.5_1_4:75023855-75040225:+|nuORF;ENST00000461101.1_1_4:75023855-75025862:+|nuORF;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L ENST00000484725.1_1_4:75023915-75027541:+|nuORF ENST00000484725.1_1_4:75023915-75027541:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 419.713945 837.413337 0.44002 0.00018468 0.01311 5.5025E-06 0.45313 0.00019018 419.7141800204361 58.871 0.33539 58.81 58.607 58.943 -0.060719 0.085511 0.00011317 NaN 26.884 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2134500 45552 7059 30335 31075 -0.01187309133990766 PGSAFRGF 8 Unmodified _PGSAFRGF_ 0 0 0 ENST00000484725.1_1_4:75023915-75027541:+|nuORF;ENST00000423607.5_1_4:75023855-75040225:+|nuORF;ENST00000461101.1_1_4:75023855-75025862:+|nuORF;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L ENST00000484725.1_1_4:75023915-75027541:+|nuORF ENST00000484725.1_1_4:75023915-75027541:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 419.713945 837.413337 1.3491 0.00056622 -0.2744 -0.00011517 1.0747 0.00045105 419.714075016707 64.815 0.35296 58.639 58.45 58.803 -6.1757 -0.085511 -0.00012818 NaN 26.884 25 19 2 NaN NaN NaN NaN 0 NaN NaN 0 8004900 45553 7059 30335 31075 -0.01187309133990766 PGSCSCPACC 10 Unmodified _PGSCSCPACC_ 0 0 0 ENST00000469559.5_1_3:38167506-38167863:-|nuORF ENST00000469559.5_1_3:38167506-38167863:-|nuORF ENST00000469559.5_1_3:38167506-38167863:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5518493652344 2 464.145009 926.275465 NaN NaN NaN NaN NaN NaN NaN 18.983 1 19.006 18.506 19.506 0.023106 0 0 0 1.0061 1 9552 9552 0 0 1 45554 13837 30336 31076 53520 53520 -0.19062208103116518 PGSEPDMSQY 10 Unmodified _PGSEPDMSQY_ 0 0 0 nc|ENSG00000007372|P26367|PAX6;ENSG00000007372|ENST00000640368|PAX6;chr11:31811015-31817809|126|10.42|0.6|4.11|-|ENST00000638914|PAX6,PAX6;ENST00000474783.2_2_11:31811484-31812594:-|nuORF nc|ENSG00000007372|P26367|PAX6 nc|ENSG00000007372|P26367|PAX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7239990234375 2 555.724046 1109.43354 0.48078 0.00026718 0.61394 0.00034118 1.0947 0.00060836 555.72393049122 50.32 0.30552 50.32 50.171 50.477 0 31 13 3 0 0 0 0.68719 1 27727 27727 4.3292 0.38484 1 6253200 45555 70 30337 31077 53521 53521 -0.1167997104701044 PGSFRCECHQG 11 Unmodified _PGSFRCECHQG_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5024108886719 3 407.502697 1219.48626 0.018658 7.603E-06 0.97806 0.00039856 0.99672 0.00040616 407.5030033291577 38.654 0.32466 38.367 38.217 38.541 -0.28687 37 15 3 0 0 0 0.71341 1 20330 20330 1.2148 0 1 11342000 45556 5414 30338 31078 53522 53522 -0.11470291465207083 PGSLMDAAKL 10 Unmodified _PGSLMDAAKL_ 0 0 0 REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7682495117188 2 501.76806 1001.52157 0.56586 0.00028393 -0.66795 -0.00033516 -0.10209 -5.1228E-05 501.76761660833284 36.091 0.17417 36.091 35.993 36.167 0 14 8 2 0 0 0 0.20962 1 19122 19122 32.786 0.4802 1 3760200 + 45557 21481 30339 31079 53523 53523 0.020866943342412014 PGSLMDAAKL 10 Unmodified _PGSLMDAAKL_ 0 0 0 REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF REV__ENST00000454547.1_1_1:19209079-19212092:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7684020996094 2 501.76806 1001.52157 NaN NaN NaN NaN NaN NaN NaN 36.609 1 36.609 36.109 37.109 0 0 0 0 0.37462 1 19428 19428 32.786 0.4802 1 + 45558 21481 30339 31079 53524 53524 0.020866943342412014 PGSNNDEYCLH 11 Unmodified _PGSNNDEYCLH_ 0 0 0 REV__ENST00000435964.1_1_2:175260618-175260879:+|nuORF REV__ENST00000435964.1_1_2:175260618-175260879:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8359680175781 3 416.83651 1247.4877 0.10811 4.5063E-05 -2.3026 -0.0009598 -2.1945 -0.00091474 416.83531720033784 50.602 0.2514 50.602 50.433 50.685 0 20 11 2 0 0 0 0.71618 1 27870 27870 2.4348 0.15201 1 3306300 + 45559 27025 30340 31080 53525 53525 -0.12614378895455047 PGSSISALI 9 Unmodified _PGSSISALI_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.4776000976562 1 844.47746 843.470183 0.42442 0.00035842 0.58176 0.00049128 1.0062 0.0008497 844.4774022025082 47.863 0.39421 47.863 47.601 47.995 0 23 18 2 0 0 0 0.042911 1 26276 26276 48.346 6.2513 1 1141900 45560 3065 30341 31081 53526 53526 0.04218693631844417 PGSSLTLQCLT 11 Carbamidomethyl (C) _PGSSLTLQC(Carbamidomethyl (C))LT_ PGSSLTLQC(1)LT PGSSLTLQC(48)LT 0 1 0 REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8008422851562 2 588.800088 1175.58562 0.51275 0.00030191 0.37257 0.00021937 0.88532 0.00052128 588.8004847072433 52.392 0.39246 51.958 51.709 52.101 -0.43367 38 19 3 0 0 0 0.065225 1 28268 28268 47.594 11.467 1 9817300 + 45561 25042 30342 31082 53527 53527 1054 0.004854297005067565 PGSSLTLQCLT 11 Carbamidomethyl (C) _PGSSLTLQC(Carbamidomethyl (C))LT_ 0 1 0 REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.800088 1175.58562 0.51275 0.00030191 0.37257 0.00021937 0.88532 0.00052128 588.8004847072433 52.392 0.39246 51.958 51.709 52.101 -0.43367 -0.056005 -0.00029477 NaN 47.594 38 19 3 NaN NaN NaN NaN 0 NaN NaN 0 9817300 + 45562 25042 30342 31082 1054 0.004854297005067565 PGSSLTLQCLT 11 Carbamidomethyl (C) _PGSSLTLQC(Carbamidomethyl (C))LT_ 0 1 0 REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF REV__ENST00000263119.9_1_22:24567765-24567831:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 588.800088 1175.58562 0.49208 0.00028973 2.1951 0.0012925 2.6872 0.0015822 588.8017625519104 52.031 0.33541 51.973 51.875 52.21 -0.058918 -0.041922 0.0018515 NaN 47.594 28 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3589500 + 45563 25042 30342 31082 1054 0.004854297005067565 PGSVLHASVL 10 Unmodified _PGSVLHASVL_ 0 0 0 ENSG00000185220|ENST00000329291|PGBD2 ENSG00000185220|ENST00000329291|PGBD2 ENSG00000185220|ENST00000329291|PGBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2832336425781 2 490.282192 978.549831 1.3899 0.00068146 -0.31326 -0.00015359 1.0767 0.00052787 490.2820825395079 58.67 0.51789 52.595 52.299 52.817 -6.0745 35 28 2 0 0 0 0.35903 1 37573 37573 24.021 0.87215 1 11614000 45564 9346 30343 31083 53528 53528 0.05969760305856653 PGTCSEGRR 9 Unmodified _PGTCSEGRR_ 0 0 0 REV__ENST00000450554.6_1_19:56166411-56171553:+|nuORF REV__ENST00000450554.6_1_19:56166411-56171553:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.2732238769531 2 481.727258 961.439962 0.75929 0.00036577 0.65823 0.00031709 1.4175 0.00068286 481.7269770893758 36.611 0.47264 32.327 32.159 32.632 -4.2835 48 29 2 0 0 0 0.21367 1 21380 21380 4.756 0 1 21478000 + 45565 27203 30344 31084 53529 53529 -0.04229988304973631 PGTFHFHY 8 Unmodified _PGTFHFHY_ 0 0 0 nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6;nc|ENSG00000063015|Q53EL9-4|SEZ6;nc|ENSG00000063015|Q53EL9-2|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7456359863281 2 503.232502 1004.45045 0.80411 0.00040466 -3.4711 -0.0017468 -2.667 -0.0013421 503.2313738636299 38.656 0.44365 38.656 38.414 38.858 0 37 21 2 0 0 0 8.7369 1 20754 20754 9.3474 1.4373 1 1501600 45566 854 30345 31085 53530 53530 -0.05159637588246824 PGTTGPPLA 9 Unmodified _PGTTGPPLA_ 0 0 0 REV__nc|ENSG00000138674|O94979-10|SEC31A;REV__nc|ENSG00000138674|O94979-7|SEC31A REV__nc|ENSG00000138674|O94979-10|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4371948242188 1 810.435595 809.428318 0.15423 0.000125 0.072356 5.864E-05 0.22659 0.00018364 810.4362033108201 39.22 0.20606 39.22 39.096 39.302 0 14 9 2 0 0 0 0.03327 1 20960 20960 53.576 0 1 1166000 + 45567 29658;29659 30346 31086 53531 53531 0.015981379433128495 PGTWAPHI 8 Unmodified _PGTWAPHI_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7301330566406 2 439.729595 877.444637 1.2047 0.00052974 -0.038096 -1.6752E-05 1.1666 0.00051299 439.7295812011169 87.696 0.65689 81.521 81.036 81.693 -6.1757 63 35 2 0 0 0 0.65867 1 57729 57729 20.871 1.4322 1 21443000 45568 4333 30347 31087 53532 53532 0.0010126390006917063 PGVATSTL 8 Unmodified _PGVATSTL_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.5528259277344 2 373.208161 744.401769 0.7627 0.00028464 0.36387 0.0001358 1.1266 0.00042044 373.20831162170515 23.94 0.36718 21.113 20.881 21.248 -2.8273 27 21 2 0 0 0 8.7369 1 12922 12922 9.3474 0 1 3155300 45569 3344 30348 31088 53533 53533 0.019344490519983992 PGVFLEKD 8 Unmodified _PGVFLEKD_ 0 0 0 nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENSG00000147799|ENST00000377307|ARHGAP39 nc|ENSG00000147799|Q9C0H5|ARHGAP39 nc|ENSG00000147799|Q9C0H5|ARHGAP39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4808349609375 1 904.47746 903.470183 0.053841 4.8698E-05 -0.19689 -0.00017808 -0.14305 -0.00012938 904.4773871720886 76.059 0.31216 76.059 75.936 76.248 0 25 13 3 0 0 0 0.80044 1 42329 42329 6.3541 1.1234 1 2066700 45570 5882 30349 31089 53534 53534 0.014586936318437438 PGVHSLPH 8 Unmodified _PGVHSLPH_ 0 0 0 nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000058091|O94921-2|CDK14;ENSG00000058091|ENST00000380050|CDK14 nc|ENSG00000058091|O94921-3|CDK14 nc|ENSG00000058091|O94921-3|CDK14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2270202636719 2 422.22722 842.439886 NaN NaN NaN NaN NaN NaN NaN 17.543 1 17.543 17.043 18.043 0 0 0 0 0.97348 1 8653 8653 5.7604 1.0044 1 45571 800 30350 31090 53535 53535 0.012363797573243573 PGVLYEQF 8 Unmodified _PGVLYEQF_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B;ENST00000590271.5_1_18:76847676-76954399:+|nuORF nc|ENSG00000166377|O43861-2|ATP9B nc|ENSG00000166377|O43861-2|ATP9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7425231933594 2 476.742368 951.470183 NaN NaN NaN NaN NaN NaN NaN 67.7 1 67.7 67.2 68.2 0 0 0 0 0.9706 1 37751 37751 6.3541 1.1234 1 45572 7479 30351 31091 53536 53536 -0.007493063681408785 PGVQLESSGAA 11 Unmodified _PGVQLESSGAA_ 0 0 0 REV__nc|ENSG00000167395|O15015-1|ZNF646 REV__nc|ENSG00000167395|O15015-1|ZNF646 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7920227050781 2 508.256371 1014.49819 -0.14949 -7.598E-05 2.0618 0.0010479 1.9123 0.00097193 508.25771735827294 69.071 0.34187 68.59 68.421 68.763 -0.48071 31 14 3 0 0 0 0.26754 1 37681 37681 13.042 5.7532 1 2808300 + 45573 22209 30352 31092 53537 53537 -0.008480281787115018 PGVRTRPP 8 Unmodified _PGVRTRPP_ 0 0 0 ENST00000395323.7_1_2:30454404-30457281:+|nuORF ENST00000395323.7_1_2:30454404-30457281:+|nuORF ENST00000395323.7_1_2:30454404-30457281:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.2622985839844 2 440.261594 878.508634 NaN NaN NaN NaN NaN NaN NaN 12.032 1 9.55 9.05 10.05 -2.482 0 0 0 0.69365 1 6067 6067 28.487 0 1 45574 12765 30353 31093 53538 53538 0.06452044057039075 PGVWAQSLGA 10 Unmodified _PGVWAQSLGA_ 0 0 0 ENST00000566786.5_1_16:56903718-56906311:+|nuORF ENST00000566786.5_1_16:56903718-56906311:+|nuORF ENST00000566786.5_1_16:56903718-56906311:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.76611328125 2 493.258717 984.50288 0.36481 0.00017994 0.13544 6.6809E-05 0.50025 0.00024675 493.2582352318781 41.314 1.1935 36.706 36.1 37.294 -4.6079 301 76 7 0 0 0 0.46514 1 24727 24727 18.146 1.0335 1 1826799999.9999998 45575 15424 30354 31094 53539 53539 0.010009007547182591 PGVWDRRVL 9 Unmodified _PGVWDRRVL_ 0 0 0 ENST00000337673.6_1_7:99097715-99097892:-|nuORF ENST00000337673.6_1_7:99097715-99097892:-|nuORF ENST00000337673.6_1_7:99097715-99097892:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3111572265625 2 549.314358 1096.61416 0.43313 0.00023793 -0.51927 -0.00028524 -0.086131 -4.7313E-05 549.3144330733609 89.342 0.33624 88.841 88.688 89.025 -0.50172 30 14 3 0 0 0 0.4887 1 48817 48817 12.532 3.7861 1 1101000 45576 11931 30355 31095 53540 53540 0.06971960182659132 PGVYARVTRL 10 Unmodified _PGVYARVTRL_ 0 0 0 ENST00000395264.3_1_19:2389783-2414036:+|nuORF;nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9 ENST00000395264.3_1_19:2389783-2414036:+|nuORF ENST00000395264.3_1_19:2389783-2414036:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.5412902832031 3 377.892619 1130.65603 1.6825 0.0006358 -1.8009 -0.00068056 -0.11846 -4.4766E-05 377.89228136558387 21.236 0.24001 18.543 18.384 18.624 -2.693 18 13 2 0 0 0 0.23895 1 11292 11292 2.086 0 1 3005700 45577 8743 30356 31096 53541 53541 0.09592515871190699 PGVYAVVDL 9 Unmodified _PGVYAVVDL_ 0 0 0 ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4 ENSG00000215041|ENST00000399464|NEURL4 ENSG00000215041|ENST00000399464|NEURL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.5134887695312 1 932.50876 931.501483 0.67537 0.00062979 -0.98906 -0.00092231 -0.31368 -0.00029251 932.5077584048207 59.763 0.30002 59.763 59.602 59.902 0 36 13 4 0 0 0 0.58466 1 33379 33379 2.3027 0 1 7570200 45578 10518 30357 31097 53542 53542 0.032992666659424685 PGWAGHLH 8 Unmodified _PGWAGHLH_ 0 0 0 ENST00000375023.3_1_6:32188393-32188603:-|nuORF ENST00000375023.3_1_6:32188393-32188603:-|nuORF ENST00000375023.3_1_6:32188393-32188603:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.7198181152344 2 437.719562 873.42457 0.15158 6.6348E-05 -0.25807 -0.00011296 -0.10649 -4.6615E-05 437.71953802420177 30.3 0.18507 30.33 30.207 30.393 0.030106 16 7 3 0 0 0 0.61999 1 15826 15826 24.21 7.2677 1 1354200 45579 12468 30358 31098 53543 53543 -0.017204870398586536 PGWEEKQDE 9 Unmodified _PGWEEKQDE_ 0 0 0 ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF ENSG00000069869|ENST00000435532|NEDD4 ENSG00000069869|ENST00000435532|NEDD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2438354492188 2 559.24346 1116.47237 NaN NaN NaN NaN NaN NaN NaN 23.639 1 23.639 23.139 24.139 0 0 0 0 0.84737 1 12055 12055 1.8442 0.19162 1 45580 1008 30359 31099 53544 53544 -0.08120922420994248 PGWKTPRV 8 Unmodified _PGWKTPRV_ 0 0 0 ENST00000374103.8_1_10:50964838-50966574:-|nuORF ENST00000374103.8_1_10:50964838-50966574:-|nuORF ENST00000374103.8_1_10:50964838-50966574:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7722778320312 2 470.771794 939.529036 0.14048 6.6136E-05 1.2636 0.00059485 1.4041 0.00066099 470.7726809150676 40.877 0.46852 40.875 40.773 41.241 -0.0017891 27 22 2 0 0 0 0.80624 1 21820 21820 2.8892 0 1 1570800 45581 12434 30360 31100 53545 53545 0.0568521471685699 PGWMQYQQW 9 Unmodified _PGWMQYQQW_ 0 0 0 ENSG00000163825|ENST00000296142|RTP3 ENSG00000163825|ENST00000296142|RTP3 ENSG00000163825|ENST00000296142|RTP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2691040039062 2 612.268758 1222.52296 0.58359 0.00035731 -0.83278 -0.00050989 -0.24919 -0.00015257 612.2683558905728 85.23 0.73569 84.728 84.365 85.1 -0.5015 114 55 4 0 0 0 0.61256 1 46511 46511 0.6015 0.076735 1 5534500 45582 7080 30361 31101 53546 53546 -0.07939671576991714 PGWRRKHWVVK 11 Unmodified _PGWRRKHWVVK_ 0 0 0 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 MSMS AL20221201_MKP_PDAC_01 4 483.9508056640625 3 483.617712 1447.83131 NaN NaN NaN NaN NaN NaN NaN 15.218 1 12.691 12.191 13.191 -2.5273 0 0 0 0.93694 1 7788 7788 4.7159 3.2608 1 45583 1079 30362 31102 53547 53547 0.12530355456055986 PGYEIKLSY 9 Unmodified _PGYEIKLSY_ 0 0 0 REV__ENST00000430836.1_1_20:3342707-3342845:-|nuORF REV__ENST00000430836.1_1_20:3342707-3342845:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.7784423828125 2 535.281857 1068.54916 1.0563 0.0005654 -4.2676 -0.0022844 -3.2114 -0.001719 535.2796229706518 37.803 0.30735 33.434 33.348 33.655 -4.3689 25 17 2 0 0 0 0.18521 1 22243 22243 16.942 6.7589 1 29646000 + 45584 26970 30363 31103 53548 53548 0.017629208661446683 PGYQGGQPGY 10 Unmodified _PGYQGGQPGY_ 0 0 0 REV__nc|ENSG00000117713|O14497-3|ARID1A REV__nc|ENSG00000117713|O14497-3|ARID1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2340087890625 2 512.230156 1022.44576 NaN NaN NaN NaN NaN NaN NaN 38.758 1 38.758 38.258 39.258 0 0 0 0 0.71851 1 20723 20723 15.847 1.0089 1 + 45585 16730 30364 31104 53549 53549 -0.06456566521649165 PGYSLDEHFN 10 Unmodified _PGYSLDEHFN_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5089111328125 3 393.508611 1177.504 -0.0082864 -3.2608E-06 0.93521 0.00036801 0.92692 0.00036475 393.8431365691327 20.157 0.14569 20.167 20.09 20.236 0.010551 13 7 3 0 0 0 0.69064 1 10275 10275 1.9064 0.31409 1 686000 + 45586 20158 30365 31105 53550 53550 -0.07764929667041542 PHAAPLRS 8 Unmodified _PHAAPLRS_ 0 0 0 REV__ENST00000583106.1_1_18:75691552-75694631:-|nuORF REV__ENST00000583106.1_1_18:75691552-75694631:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 424.2174987792969 2 424.740494 847.466435 0.47775 0.00020292 -0.50922 -0.00021628 -0.031467 -1.3365E-05 424.74057957307565 24.619 0.27414 21.736 21.578 21.852 -2.8831 19 14 2 0 0 0 8.7369 1 13369 13369 5.2307 0 1 2289500 + 45587 29076 30366 31106 53551 53551 0.03660068648673587 PHAGLVSHAA 10 Unmodified _PHAGLVSHAA_ 0 0 0 REV__nc|ENSG00000148120|Q8N6M6-3|AOPEP REV__nc|ENSG00000148120|Q8N6M6-3|AOPEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.9170837402344 2 480.256508 958.498464 1.1327 0.000544 -1.147 -0.00055084 -0.014236 -6.8367E-06 480.25496694689855 49.831 0.28203 49.782 49.645 49.927 -0.048824 21 13 2 0 0 0 0.22149 1 26948 26948 20.454 5.6154 1 1452800 + 45588 20927 30367 31107 53552 53552 0.017554363317913158 PHAPTAHSY 9 Unmodified _PHAPTAHSY_ 0 0 0 REV__ENST00000461692.5_1_3:58417700-58419475:-|nuORF REV__ENST00000461692.5_1_3:58417700-58419475:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7321166992188 2 490.732866 979.451179 NaN NaN NaN NaN NaN NaN NaN 20.291 1 20.291 19.791 20.791 0 0 0 0 0.70111 1 10202 10202 9.3474 0.75416 1 + 45589 27323 30368 31108 53553 53553 -0.039368429391970494 PHARARHR 8 Unmodified _PHARARHR_ 0 0 0 REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF REV__ENST00000590083.5_1_19:1229180-1230152:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1000.894897460938 1 1000.56599 999.558713 0.55157 0.00055188 -2.7072 -0.0027088 -2.1557 -0.0021569 1001.5628570489577 25.801 0.11405 25.828 25.798 25.912 0.026951 10 7 2 0 0 0 8.7369 1 13386 13386 6.3541 3.4649 1 11835000 + 45590 17981 30369 31109 53554 53554 0.058915915055422374 PHARPPLT 8 Unmodified _PHARPPLT_ 0 0 0 REV__ENSG00000116991|ENST00000674635|SIPA1L2 REV__ENSG00000116991|ENST00000674635|SIPA1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.7574157714844 2 444.756144 887.497735 0.60074 0.00026718 1.3524 0.00060148 1.9531 0.00086866 444.7565984752306 73.69 0.58215 73.734 73.361 73.943 0.043976 67 26 3 0 0 0 0.80763 1 40495 40495 2.0598 1.2661 1 11113000 + 45591 19077 30370 31110 53555 53555 0.04948641682733523 PHARPTHR 8 Unmodified _PHARPTHR_ 0 0 0 REV__ENSG00000137142|ENST00000377694|IGFBPL1 REV__ENSG00000137142|ENST00000377694|IGFBPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2672424316406 2 486.267742 970.52093 0.60329 0.00029336 -1.118 -0.00054365 -0.51471 -0.00025029 486.2670863036208 87.584 0.52203 87.079 86.812 87.334 -0.50423 55 23 3 0 0 0 0.80975 1 47916 47916 0.79363 0.79363 1 3265600 + 45592 20216 30371 31111 53556 53556 0.03449080520078951 PHASLISTL 9 Unmodified _PHASLISTL_ 0 0 0 ENST00000275605.7_1_7:56119039-56119264:-|nuORF ENST00000275605.7_1_7:56119039-56119264:-|nuORF ENST00000275605.7_1_7:56119039-56119264:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7693176269531 2 469.768917 937.523281 -0.20492 -9.6263E-05 0.34182 0.00016058 0.13691 6.4316E-05 469.76901711038204 41.246 0.33945 41.246 41.065 41.404 0 46 16 4 0 0 0 0.013472 1 22182 22182 70.716 0 1 25829000 45593 11391 30372 31112 53557 53557 0.052020714145328384 PHAVGRFL 8 Unmodified _PHAVGRFL_ 0 0 0 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7583312988281 2 448.758687 895.502821 0.75202 0.00033747 -0.90894 -0.0004079 -0.15693 -7.0422E-05 448.75827567965035 48.394 0.25708 48.35 48.198 48.455 -0.04369 18 12 2 0 0 0 0.2655 1 26087 26087 59.795 19.347 1 3462000 + 45594 29901 30373 31113 53558 53558 0.050889455453557275 PHAVGRFL 8 Unmodified _PHAVGRFL_ 0 0 0 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 REV__nc|ENSG00000203711|Q4VX62-2|LINC02901 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.758687 895.502821 0.75202 0.00033747 -0.90894 -0.0004079 -0.15693 -7.0422E-05 448.75827567965035 48.394 0.25708 48.35 48.198 48.455 -0.04369 0 0 NaN 59.795 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3462000 + 45595 29901 30373 31113 0.050889455453557275 PHCLKLREF 9 Unmodified _PHCLKLREF_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.9046630859375 3 381.542821 1141.60663 -0.27567 -0.00010518 -2.5875 -0.00098724 -2.8632 -0.0010924 381.8760177717927 51.335 0.19443 51.281 51.166 51.361 -0.053871 12 9 2 0 0 0 0.21144 1 27782 27782 7.1017 1.699 1 3291400 + 45596 22971 30374 31114 53559 53559 0.04149484590720931 PHCVVHEL 8 Unmodified _PHCVVHEL_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2333068847656 2 467.234187 932.453822 1.1283 0.00052719 -0.87466 -0.00040867 0.25367 0.00011852 467.23342381394485 96.17 0.38325 89.994 89.767 90.15 -6.1757 42 23 2 0 0 0 0.5953 1 63766 63766 26.341 2.3207 1 9987400 45597 5461 30375 31115 53560 53560 -0.015107108058941776 PHDACFRPVF 10 Unmodified _PHDACFRPVF_ 0 0 0 REV__ENSG00000124570|ENST00000380539|SERPINB6 REV__ENSG00000124570|ENST00000380539|SERPINB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1923828125 3 396.858809 1187.5546 -0.58711 -0.000233 0.46542 0.00018471 -0.12169 -4.8292E-05 396.8588435677633 17.97 0.12038 17.97 17.904 18.025 0 27 18 2 0 0 0 0.70951 1 8887 8887 0.77653 0.27058 1 714880 + 45598 19456 30376 31116 53561 53561 -0.031676788230470265 PHDELDEY 8 Unmodified _PHDELDEY_ 0 0 0 REV__nc|ENSG00000134086|P40337-3|VHL REV__nc|ENSG00000134086|P40337-3|VHL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2129821777344 2 509.211629 1016.40871 0.26857 0.00013676 -0.22265 -0.00011338 0.04592 2.3383E-05 509.21283233131743 64.945 0.42395 64.945 64.719 65.143 0 72 19 5 0 0 0 0.78849 1 36262 36262 9.3474 1.4373 1 13145000 + 45599 19951 30377 31117 53562 53562 -0.09884282858092774 PHDELDEY 8 Unmodified _PHDELDEY_ 0 0 0 REV__nc|ENSG00000134086|P40337-3|VHL REV__nc|ENSG00000134086|P40337-3|VHL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 509.211629 1016.40871 0.26857 0.00013676 -0.22265 -0.00011338 0.04592 2.3383E-05 509.21283233131743 64.945 0.42395 64.945 64.719 65.143 0 -0.013236 -0.00059061 NaN 9.3474 72 19 5 NaN NaN NaN NaN 0 NaN NaN 0 13145000 + 45600 19951 30377 31117 -0.09884282858092774 PHDFENGE 8 Unmodified _PHDFENGE_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 944.3790893554688 1 944.374451 943.367175 0.45279 0.0004276 0.094254 8.9011E-05 0.54705 0.00051662 944.3766510606847 22.628 0.11798 22.646 22.57 22.688 0.01749 8 5 2 0 0 0 0.80624 1 11628 11628 2.8892 0 1 4075800 45601 10710 30378 31118 53563 53563 -0.10677418826753637 PHDFIEHF 8 Unmodified _PHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2425537109375 2 521.243067 1040.47158 1.0394 0.00054176 -0.96339 -0.00050216 0.075968 3.9598E-05 521.242600667853 46.115 0.37373 46.115 45.939 46.313 0 39 17 3 0 0 0 0.00079933 1 25168 25168 170.4 129.95 1 16185000 45602 2702 30379 31119 53564 53564 -0.04703672279379134 PHDFIEHF 8 Unmodified _PHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2432250976562 2 521.243067 1040.47158 0.447 0.00023299 -0.37311 -0.00019448 0.073891 3.8515E-05 521.2432720741042 46.397 0.32938 46.061 45.84 46.169 -0.33664 30 16 3 0 0 0 0.069468 1 24803 24803 123.1 90.979 1 19524000 45603 2702 30379 31119 53565 53565 -0.04703672279379134 PHDFIEHF 8 Unmodified _PHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.24462890625 2 521.243067 1040.47158 1.0836 0.0005648 0.19863 0.00010353 1.2822 0.00066833 521.2431413057842 51.14 0.58847 45.491 45.134 45.722 -5.649 64 35 3 0 0 0 0.022995 2 32250 32113;32250 161.89 112.23 1 73008000 45604 2702 30379 31119 53566;53567 53567 -0.04703672279379134 PHDISCSEE 9 Unmodified _PHDISCSEE_ 0 0 0 REV__ENST00000482273.1_1_21:38269069-38269306:-|nuORF REV__ENST00000482273.1_1_21:38269069-38269306:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1016.908386230469 1 1016.39895 1015.39167 0.40718 0.00041386 -1.343 -0.001365 -0.93577 -0.00095111 1017.4006817257032 29.575 0.095135 26.274 26.232 26.327 -3.3016 7 5 2 0 0 0 0.19613 1 16620 16620 12.532 3.1841 1 72949000 + 45605 27718 30380 31120 53568 53568 -0.11540526735541334 PHDLTLSKV 9 Unmodified _PHDLTLSKV_ 0 0 0 ENST00000482803.1_1_3:9799225-9799596:-|nuORF ENST00000482803.1_1_3:9799225-9799596:-|nuORF ENST00000482803.1_1_3:9799225-9799596:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1009.554626464844 1 1009.56767 1008.5604 0.16196 0.00016351 -4.3337 -0.0043752 -4.1718 -0.0042117 1009.5640558821223 25.592 0.14764 25.575 25.545 25.692 -0.017006 12 7 2 0 0 0 0.54444 1 13123 13123 4.756 1.8668 1 62594000 45606 14115 30381 31121 53569 53569 0.056457429602915 PHDPRVPLL 9 Unmodified _PHDPRVPLL_ 0 0 0 REV__chr16:29455885-29457702|38|12.29|0.0|20.23|+|2|SLX1B-SULT1A4,None|1 REV__chr16:29455885-29457702|38|12.29|0.0|20.23|+|2|SLX1B-SULT1A4,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3057861328125 2 522.303458 1042.59236 1.4715 0.00076858 -0.83394 -0.00043557 0.63758 0.00033301 522.3031906100276 95.678 0.34428 89.503 89.316 89.66 -6.1757 60 21 3 0 0 0 0.039985 1 63284 63284 49.933 19.296 1 80523000 + 45607 16792 30382 31122 53570 53570 0.07277155434076121 PHDRVRSRMI 10 Unmodified _PHDRVRSRMI_ 0 0 0 REV__ENST00000442007.1_1_6:73985509-73985899:+|nuORF REV__ENST00000442007.1_1_6:73985509-73985899:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9014587402344 3 422.899779 1265.67751 NaN NaN NaN NaN NaN NaN NaN 59.557 1 59.504 59.004 60.004 -0.053062 0 0 0 0.92825 1 32463 32463 3.5871 0.95582 1 + 45608 27095 30383 31123 53571 53571 0.055295776282491715 PHDRVVALR 9 Unmodified _PHDRVVALR_ 0 0 0 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3114013671875 2 531.811982 1061.60941 0.62346 0.00033156 0.46126 0.00024531 1.0847 0.00057687 531.8131755478303 73.253 0.73742 72.777 72.407 73.144 -0.47588 106 32 5 0 0 0 0.34134 1 40183 40183 21.747 2.3076 1 21510000 45609 2158 30384 31124 53572 53572 0.08107076039868844 PHDSFGLLI 9 Unmodified _PHDSFGLLI_ 0 0 0 REV__ENSG00000177476|ENST00000320002|OR2G3 REV__ENSG00000177476|ENST00000320002|OR2G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7694702148438 2 499.768917 997.523281 0.91379 0.00045668 -1.1677 -0.00058356 -0.25388 -0.00012688 499.769084161836 66.039 0.58691 59.863 59.643 60.23 -6.1757 72 33 3 0 0 0 0.06187 1 42871 42871 42.095 0 1 29249000 + 45610 22986 30385 31125 53573 53573 0.024420714145321654 PHDVDHIAAAF 11 Unmodified _PHDVDHIAAAF_ 0 0 0 REV__ENST00000589073.1_1_19:10571682-10572428:+|nuORF REV__ENST00000589073.1_1_19:10571682-10572428:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 398.1973266601562 3 398.196367 1191.56727 NaN NaN NaN NaN NaN NaN NaN 19.408 1 16.752 16.252 17.252 -2.6564 0 0 0 0.76159 1 10278 10278 7.4771 0 1 + 45611 17392 30386 31126 53574 53574 -0.020849441591508366 PHDWCTTQ 8 Unmodified _PHDWCTTQ_ 0 0 0 REV__ENSG00000198947|ENST00000357033|DMD;REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 987.0606689453125 1 987.398892 986.391615 0.55508 0.00054808 -2.1351 -0.0021082 -1.58 -0.0015601 987.399906216006 26.512 0.12056 26.539 26.446 26.567 0.026951 7 4 2 0 0 0 8.7369 1 13739 13739 5.7604 0 1 3746500 + 45612 21139;24105 30387 31127 53575 53575 -0.10212481944881802 PHDYSHHHHHH 11 Unmodified _PHDYSHHHHHH_ 0 0 0 nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2;nc|ENSG00000158321|Q8WXX7-5|AUTS2 nc|ENSG00000158321|Q8WXX7-2|AUTS2 nc|ENSG00000158321|Q8WXX7-2|AUTS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 720.806396484375 2 720.806282 1439.59801 NaN NaN NaN NaN NaN NaN NaN 83.867 1 83.867 83.367 84.367 0 0 0 0 0.9435 1 46505 46505 0 0 1 45613 6580 30388 31128 53576 53576 -0.10420353001541116 PHEAALHL 8 Unmodified _PHEAALHL_ 0 0 0 REV__ENST00000596916.5_2_19:49950600-49950723:-|nuORF REV__ENST00000596916.5_2_19:49950600-49950723:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2403564453125 2 444.240327 886.466101 0.93808 0.00041673 0.48339 0.00021474 1.4215 0.00063147 444.24081308201033 56.956 0.61844 56.887 56.497 57.116 -0.068741 54 30 2 0 0 0 0.80143 1 31088 31088 5.7604 0 1 3614000 + 45614 29222 30389 31129 53577 53577 0.018326489288028824 PHEDAAQF 8 Unmodified _PHEDAAQF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7037048339844 2 457.703774 913.392996 0.11176 5.1154E-05 -0.42788 -0.00019584 -0.31611 -0.00014469 457.70370384530435 22.839 0.2844 22.839 22.653 22.938 0 22 15 2 0 0 0 0.6895 1 11621 11621 18.135 10.846 1 1048900 45615 4682 30390 31130 53578 53578 -0.06716524584487615 PHEDAAQF 8 Unmodified _PHEDAAQF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.7567443847656 2 457.703774 913.392996 -0.082052 -3.7556E-05 0.38799 0.00017759 0.30594 0.00014003 457.70428928934297 25.517 0.18143 22.634 22.531 22.712 -2.8831 13 9 2 0 0 0 8.7369 1 13966 13966 5.2307 2.3415 1 1938500 45616 4682 30390 31130 53579 53579 -0.06716524584487615 PHEEEKLSE 9 Unmodified _PHEEEKLSE_ 0 0 0 REV__ENSG00000155761|ENST00000336338|SPAG17 REV__ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1769714355469 3 366.508499 1096.50367 0.79868 0.00029272 -0.35629 -0.00013058 0.44238 0.00016214 366.50860916504075 12.07 0.12336 9.5882 9.535 9.6584 -2.482 20 16 2 0 0 0 0.58865 1 6073 6073 1.0715 0 1 1354300 + 45617 21287 30391 31131 53580 53580 -0.040723493869109006 PHFGGSLY 8 Unmodified _PHFGGSLY_ 0 0 0 REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4 REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2121276855469 2 439.213778 876.413003 NaN NaN NaN NaN NaN NaN NaN 95.513 1 95.144 94.644 95.644 -0.36814 0 0 0 0.97444 1 52169 52169 0.69038 0 1 + 45618 19482 30392 31132 53581 53581 -0.03014728853872839 PHFIFARV 8 Unmodified _PHFIFARV_ 0 0 0 REV__ENST00000559391.1_1_15:86279335-86283581:+|nuORF REV__ENST00000559391.1_1_15:86279335-86283581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 986.2283325195312 1 986.557047 985.549771 0.52947 0.00052235 3.5822 0.003534 4.1117 0.0040564 986.5630556169109 27.97 0.14963 27.999 27.956 28.106 0.029564 8 5 2 0 0 0 0.80044 1 14551 14551 6.3541 0 1 1695800 + 45619 28813 30393 31133 53582 53582 0.05641805096513508 PHFIFPEQI 9 Unmodified _PHFIFPEQI_ 0 0 0 REV__ENST00000323013.6_1_22:42908285-42908810:-|nuORF REV__ENST00000323013.6_1_22:42908285-42908810:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.534423828125 3 376.53432 1126.58113 NaN NaN NaN NaN NaN NaN NaN 14.97 1 14.976 14.476 15.476 0.0057774 0 0 0 0.84369 1 7443 7443 1.1933 0 1 + 45620 25523 30394 31134 53583 53583 0.022903333399654002 PHFIHILLA 9 Unmodified _PHFIHILLA_ 0 0 0 nc|ENSG00000273085|Q8NGJ3|OR52E1 nc|ENSG00000273085|Q8NGJ3|OR52E1 nc|ENSG00000273085|Q8NGJ3|OR52E1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.306884765625 2 530.818744 1059.62294 0.60589 0.00032162 0.49793 0.00026431 1.1038 0.00058593 530.8188533409427 99.113 0.13134 92.937 92.859 92.99 -6.1757 11 7 2 0 0 0 0.14144 1 65881 65881 28.173 0 1 32634000 45621 16601 30395 31135 53584 53584 0.09550933819150487 PHFLNYVQ 8 Unmodified _PHFLNYVQ_ 0 0 0 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 REV__nc|ENSG00000090975|Q9BZ72-3|PITPNM2 MSMS AL20221201_MKP_PDAC_01 4 509.2606201171875 2 509.261259 1016.50797 NaN NaN NaN NaN NaN NaN NaN 20.028 1 17.372 16.872 17.872 -2.6564 0 0 0 0.95607 1 10648 10648 9.3474 0.75416 1 + 45622 17875 30396 31136 53585 53585 0.00037204617331099143 PHFLSLSW 8 Unmodified _PHFLSLSW_ 0 0 0 REV__ENST00000304032.12_1_2:237035829-237035973:+|nuORF REV__ENST00000304032.12_1_2:237035829-237035973:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7582397460938 2 493.758352 985.502152 0.53744 0.00026537 -0.077397 -3.8215E-05 0.46004 0.00022715 493.758245493322 60.793 0.27261 60.75 60.613 60.886 -0.04351 28 13 3 0 0 0 0.37649 1 33161 33161 46.921 6.9635 1 7939700 + 45623 25355 30397 31137 53586 53586 0.00882106105677849 PHFNKQKMVYF 11 Unmodified _PHFNKQKMVYF_ 0 0 0 REV__ENST00000348367.8_1_10:113941567-113942592:-|nuORF REV__ENST00000348367.8_1_10:113941567-113942592:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2468872070312 3 480.248185 1437.72273 0.84841 0.00040745 -0.81923 -0.00039343 0.02918 1.4014E-05 480.24764202177937 57.789 0.31626 57.723 57.593 57.91 -0.066036 26 15 2 0 0 0 0.72952 1 31450 31450 0.50596 0.051438 1 1318600 + 45624 25769 30398 31138 53587 53587 0.021373833707684753 PHFNQEVDF 9 Unmodified _PHFNQEVDF_ 0 0 0 REV__ENST00000474221.5_1_11:293333-294746:+|nuORF REV__ENST00000474221.5_1_11:293333-294746:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.7560424804688 2 566.756538 1131.49852 NaN NaN NaN NaN NaN NaN NaN 16.09 1 13.533 13.033 14.033 -2.557 0 0 0 0.84564 1 8311 8311 2.0598 0.21551 1 + 45625 20561 30399 31139 53588 53588 -0.06196608458844821 PHFNVDVSF 9 Unmodified _PHFNVDVSF_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000037665 REV__CON__ENSEMBL:ENSBTAP00000037665 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.257080078125 2 531.256174 1060.49779 0.45956 0.00024414 0.8376 0.00044498 1.2972 0.00068912 531.2563935000632 62.828 0.41929 62.342 62.082 62.501 -0.48617 46 20 3 0 0 0 0.34999 1 34301 34301 14.838 0 1 17291000 + + 45626 16831 30400 31140 53589 53589 -0.030034031079139822 PHFQHFRE 8 Unmodified _PHFQHFRE_ 0 0 0 REV__ENST00000462152.5_1_3:98451353-98503832:+|nuORF REV__ENST00000462152.5_1_3:98451353-98503832:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5149536132812 3 366.51403 1096.52026 NaN NaN NaN NaN NaN NaN NaN 15.581 1 15.581 15.081 16.081 0 0 0 0 0.97444 1 7517 7517 0.45834 0 1 + 45627 27332 30401 31141 53590 53590 -0.02413758919601605 PHFRNGKLYF 10 Unmodified _PHFRNGKLYF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.8963928222656 3 426.896252 1277.66693 -0.068153 -2.9094E-05 0.50374 0.00021505 0.43559 0.00018595 426.89653754785485 54.039 0.27663 53.972 53.824 54.101 -0.066936 46 13 4 0 0 0 0.6606 1 29303 29303 6.6304 3.0433 1 19693000 45628 1980 30402 31142 53591 53591 0.03919918245469489 PHFVPYASLL 10 Unmodified _PHFVPYASLL_ 0 0 0 ENSG00000224470|ENST00000427980|ATXN1L ENSG00000224470|ENST00000427980|ATXN1L ENSG00000224470|ENST00000427980|ATXN1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8787536621094 3 381.878087 1142.61243 0.65092 0.00024857 0.97653 0.00037291 1.6274 0.00062149 381.8785462582803 46.98 0.42697 46.644 46.367 46.794 -0.33664 31 21 2 0 0 0 0.65502 1 25104 25104 4.1895 0 1 7079000 45629 10580 30403 31143 53592 53592 0.04682906374023332 PHFVSFLVF 9 Unmodified _PHFVSFLVF_ 0 0 0 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000368311.5_1_1:155981561-155981702:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2275390625 2 546.797478 1091.5804 0.34147 0.00018672 0.587 0.00032097 0.92847 0.00050769 547.2991005504493 51.667 0.12746 51.667 51.603 51.73 0 9 5 2 0 0 0 0.21242 1 28509 28509 2.3027 0 1 1450400 45630 13915 30404 31144 53593 53593 0.03827538690916299 PHFYGLPSL 9 Unmodified _PHFYGLPSL_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF;ENST00000581709.1_1_18:67758841-67776916:-|nuORF nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2534790039062 2 515.77146 1029.52837 -0.62972 -0.00032479 -1.5211 -0.00078457 -2.1509 -0.0011094 515.7716086026467 30.445 0.24128 30.445 30.305 30.546 0 15 11 2 0 0 0 0.20528 1 15874 15874 8.5933 1.304 1 1491100 45631 8577 30405 31145 53594 53594 0.01478375277156374 PHFYLAIR 8 Unmodified _PHFYLAIR_ 0 0 0 REV__ENSG00000078589|ENST00000171757|P2RY10 REV__ENSG00000078589|ENST00000171757|P2RY10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1016.735778808594 1 1016.56761 1015.56034 0.5193 0.0005279 -0.57539 -0.00058492 -0.056088 -5.7018E-05 1016.5667230165601 23.361 0.088953 23.382 23.344 23.433 0.021185 6 3 2 0 0 0 8.7369 1 12021 12021 0.79363 0 1 3848300 + 45632 17631 30406 31146 53595 53595 0.05317787750925618 PHGAGYHFRCM 11 Unmodified _PHGAGYHFRCM_ 0 0 0 REV__nc|ENSG00000171720|O15379-2|HDAC3 REV__nc|ENSG00000171720|O15379-2|HDAC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2034912109375 3 425.855182 1274.54372 -0.4578 -0.00019496 -1.0911 -0.00046464 -1.5489 -0.0006596 425.8548668176147 19.397 0.15238 19.397 19.313 19.466 0 13 9 2 0 0 0 0.30533 1 9714 9714 1.4551 0 1 483730 + 45633 29778 30407 31147 53596 53596 -0.08257404468986351 PHGCDSSSLF 10 Unmodified _PHGCDSSSLF_ 0 0 0 ENST00000493116.5_1_3:180893053-180893335:+|nuORF ENST00000493116.5_1_3:180893053-180893335:+|nuORF ENST00000493116.5_1_3:180893053-180893335:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2222290039062 2 525.221474 1048.42839 NaN NaN NaN NaN NaN NaN NaN 63.936 1 63.451 62.951 63.951 -0.48512 0 0 0 0.96627 1 34876 34876 4.3292 1.44 1 45634 14307 30408 31148 53597 53597 -0.09388230118997853 PHGEAAAM 8 Unmodified _PHGEAAAM_ 0 0 0 REV__ENSG00000153132|ENST00000325617|CLGN REV__ENSG00000153132|ENST00000325617|CLGN MSMS AL20221201_MKP_PDAC_01 4 392.1777648925781 2 392.176338 782.338123 NaN NaN NaN NaN NaN NaN NaN 21.144 1 18.451 17.951 18.951 -2.693 0 0 0 0.97348 1 11295 11295 5.7604 2.8712 1 + 45635 21153 30409 31149 53598 53598 -0.061752346567459426 PHGEKRQKL 9 Unmodified _PHGEKRQKL_ 0 0 0 ENST00000318967.6_2_1:153700611-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8811645507812 3 364.880602 1091.61998 1.8412 0.00067183 0.95928 0.00035002 2.8005 0.0010218 364.8808243811521 41.016 0.48281 36.408 36.116 36.599 -4.6079 75 29 3 0 0 0 0.49272 1 24565 24565 4.897 0.70751 1 40652000 45636 11755 30410 31150 53599 53599 0.07783058694326428 PHGGHHHLQGH 11 Unmodified _PHGGHHHLQGH_ 0 0 0 REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.1953430175781 3 405.195583 1212.56492 0.25098 0.0001017 -1.9668 -0.00079692 -1.7158 -0.00069523 405.19494223320174 24.913 0.27142 22.03 21.835 22.106 -2.8831 39 17 3 0 0 0 0.6249 1 13605 13605 5.0475 0 1 16771000 + 45637 26141 30411 31151 53600 53600 -0.03285935053600042 PHGGHHHLQGH 11 Unmodified _PHGGHHHLQGH_ 0 0 0 REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 405.195583 1212.56492 -0.41804 -0.00016939 -1.4371 -0.00058232 -1.8552 -0.00075171 405.1952055237891 22.102 0.11273 22.102 22.05 22.163 0 0.036286 0.00047998 NaN 5.0475 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 667260 + 45638 26141 30411 31151 -0.03285935053600042 PHGGHHHLQGH 11 Unmodified _PHGGHHHLQGH_ 0 0 0 REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF REV__ENST00000475069.5_1_10:71258067-71266025:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 405.195583 1212.56492 0.25098 0.0001017 -1.9668 -0.00079692 -1.7158 -0.00069523 405.19494223320174 24.913 0.27142 22.03 21.835 22.106 -2.8831 -0.036286 -0.00016382 NaN 5.0475 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 16771000 + 45639 26141 30411 31151 -0.03285935053600042 PHGGLFSP 8 Unmodified _PHGGLFSP_ 0 0 0 ENST00000609439.2_2_7:45849579-45850077:+|nuORF ENST00000609439.2_2_7:45849579-45850077:+|nuORF ENST00000609439.2_2_7:45849579-45850077:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.568359375 2 406.208495 810.402438 1.0989 0.00044639 -0.16432 -6.6749E-05 0.9346 0.00037964 406.20823950334454 34.936 0.33619 30.841 30.599 30.935 -4.0951 26 19 2 0 0 0 8.7369 1 20132 20132 15.768 1.1865 1 4493900 45640 15880 30412 31152 53601 53601 -0.010347115082822711 PHGGRPRP 8 Unmodified _PHGGRPRP_ 0 0 0 ENST00000467926.5_1_22:21322139-21327873:+|nuORF ENST00000467926.5_1_22:21322139-21327873:+|nuORF ENST00000467926.5_1_22:21322139-21327873:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7421569824219 2 437.243735 872.472918 0.79796 0.0003489 -2.7052 -0.0011828 -1.9073 -0.00083394 437.2424983257461 68.59 0.22491 68.615 68.499 68.724 0.025146 18 10 2 0 0 0 8.7369 1 37649 37649 2.5775 0 1 3727400 45641 13793 30413 31153 53602 53602 0.03158006600028784 PHGHITSL 8 Unmodified _PHGHITSL_ 0 0 0 ENSG00000156269|ENST00000286794|NAA11;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.8877563476562 2 431.232502 860.450451 0.60698 0.00026175 0.44376 0.00019136 1.0507 0.00045311 431.23280426692685 28.093 0.25357 24.945 24.843 25.097 -3.1482 18 13 2 0 0 0 8.7369 1 15619 15619 56.541 18.39 1 5485800 45642 6444 30414 31154 53603 53603 0.014643624117638865 PHGIMIIEDP 10 Unmodified _PHGIMIIEDP_ 0 0 0 nc|ENSG00000114439|Q8WY36-2|BBX;ENSG00000114439|ENST00000325805|BBX nc|ENSG00000114439|Q8WY36-2|BBX nc|ENSG00000114439|Q8WY36-2|BBX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1796875 3 374.526837 1120.55868 -0.3768 -0.00014112 3.9961 0.0014966 3.6193 0.0013555 374.52878331518735 36.722 0.14886 36.473 36.405 36.554 -0.2497 8 6 2 0 0 0 0.23634 1 19295 19295 3.5871 0.74377 1 822450 45643 3039 30415 31155 53604 53604 0.003223658800152407 PHGPIKGL 8 Unmodified _PHGPIKGL_ 0 0 0 ENST00000334690.10_1_4:184605887-184605989:+|nuORF ENST00000334690.10_1_4:184605887-184605989:+|nuORF ENST00000334690.10_1_4:184605887-184605989:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.748291015625 2 409.747788 817.481023 NaN NaN NaN NaN NaN NaN NaN 19.762 1 17.105 16.605 17.605 -2.6564 0 0 0 0.95607 1 10493 10493 9.3474 0 1 45644 11887 30416 31156 53605 53605 0.06498140796816188 PHGPPGDT 8 Unmodified _PHGPPGDT_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-2|MST1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1809387207031 2 389.179935 776.345317 NaN NaN NaN NaN NaN NaN NaN 52.734 1 52.734 52.234 53.234 0 0 0 0 0.97444 1 29194 29194 2.3027 0 1 45645 7133;16331 30417 31157 53606 53606 -0.05180178784655709 PHGRSHMVPGF 11 Unmodified _PHGRSHMVPGF_ 0 0 0 ENST00000309100.7_1_11:65373278-65373527:-|nuORF ENST00000309100.7_1_11:65373278-65373527:-|nuORF ENST00000309100.7_1_11:65373278-65373527:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2024536132812 3 407.869708 1220.5873 0.099621 4.0632E-05 -0.77916 -0.00031779 -0.67953 -0.00027716 407.8696948339767 25.19 0.49356 22.307 22.219 22.712 -2.8831 99 34 4 0 0 0 0.68777 1 13723 13723 5.4027 5.4027 1 14074000 45646 11660 30418 31158 53607 53607 -0.014174717001651516 PHGSISLFPSF 11 Unmodified _PHGSISLFPSF_ 0 0 0 ENST00000310389.5_1_5:175798967-175799084:+|nuORF ENST00000310389.5_1_5:175798967-175799084:+|nuORF ENST00000310389.5_1_5:175798967-175799084:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8731079101562 3 396.873113 1187.59751 -0.056908 -2.2585E-05 0.02276 9.0327E-06 -0.034148 -1.3552E-05 396.87316005661467 45.538 0.29992 45.51 45.381 45.681 -0.028011 49 15 4 0 0 0 0.63851 1 24540 24540 4.7159 0 1 49234000 45647 11675 30419 31159 53608 53608 0.011214145060193914 PHGVPAGSS 9 Unmodified _PHGVPAGSS_ 0 0 0 ENST00000607286.5_1_5:476364-477927:+|nuORF ENST00000607286.5_1_5:476364-477927:+|nuORF ENST00000607286.5_1_5:476364-477927:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.7010803222656 2 404.701035 807.387516 -0.13988 -5.6608E-05 -0.47242 -0.00019119 -0.61229 -0.0002478 404.7008397917754 17.966 0.31976 17.972 17.76 18.08 0.0060482 32 22 2 0 0 0 0.30562 1 9012 9012 16.942 0 1 1419200 45648 15862 30420 31160 53609 53609 -0.023882033762788524 PHGVSTVS 8 Unmodified _PHGVSTVS_ 0 0 0 ENST00000561107.5_1_15:83419340-83419415:+|nuORF ENST00000561107.5_1_15:83419340-83419415:+|nuORF ENST00000561107.5_1_15:83419340-83419415:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.7247619628906 2 392.20341 782.392267 NaN NaN NaN NaN NaN NaN NaN 15.336 1 12.809 12.309 13.309 -2.5273 0 0 0 0.9706 1 7860 7860 6.3541 1.1234 1 45649 15315 30421 31161 53610 53610 -0.007633192335106287 PHHHHRYW 8 Unmodified _PHHHHRYW_ 0 0 0 ENST00000498285.1_2_17:8054153-8064944:-|nuORF ENST00000498285.1_2_17:8054153-8064944:-|nuORF ENST00000498285.1_2_17:8054153-8064944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5211181640625 3 390.521519 1168.54273 -0.53966 -0.00021075 0.024898 9.7233E-06 -0.51476 -0.00020102 390.5215780479142 18.292 0.10766 18.306 18.272 18.38 0.013865 41 21 3 0 0 0 0.80975 1 9160 9160 0.45834 0 1 781370 45650 14419 30422 31162 53611 53611 -0.03480114731360118 PHHLQPVL 8 Unmodified _PHHLQPVL_ 0 0 0 ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7721557617188 2 470.771794 939.529036 -0.27613 -0.00012999 1.5314 0.00072092 1.2552 0.00059092 470.772392272528 33.793 0.23892 33.793 33.709 33.947 0 24 11 3 0 0 0 0.80044 1 17757 17757 6.3541 1.1234 1 2856400 45651 11777 30423 31163 53612 53612 0.056852147168342526 PHHLQPVL 8 Unmodified _PHHLQPVL_ 0 0 0 ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.771794 939.529036 -0.27613 -0.00012999 1.5314 0.00072092 1.2552 0.00059092 470.772392272528 33.793 0.23892 33.793 33.709 33.947 0 0.0077635 -0.00028754 NaN 6.3541 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2856400 45652 11777 30423 31163 0.056852147168342526 PHHLQPVL 8 Unmodified _PHHLQPVL_ 0 0 0 ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF ENST00000321895.6_1_3:49201211-49201499:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.771794 939.529036 -0.016173 -7.614E-06 2.0788 0.00097863 2.0626 0.00097101 470.7726790033206 33.748 0.32473 33.777 33.582 33.907 0.028934 -0.0077635 0.00022788 NaN 6.3541 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 10561000 45653 11777 30423 31163 0.056852147168342526 PHHNTAYSQL 10 Unmodified _PHHNTAYSQL_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8540649414062 3 389.856233 1166.54687 -0.48725 -0.00018996 -0.44895 -0.00017503 -0.9362 -0.00036498 389.85560528962014 19.986 0.40842 19.986 19.888 20.296 0 83 41 3 0 0 0 0.5905 1 10014 10014 6.6304 3.0433 1 2920600 + 45654 19548 30424 31164 53613 53613 -0.029741148189714295 PHHRSARK 8 Unmodified _PHHRSARK_ 0 0 0 REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7803649902344 2 494.781016 987.54748 0.61883 0.00030619 -1.1567 -0.00057231 -0.53787 -0.00026613 494.78028259207986 87.553 0.47496 87.049 86.833 87.308 -0.50423 46 21 3 0 0 0 0.80624 1 47945 47945 2.8892 0 1 2026200 + 45655 25146 30425 31165 53614 53614 0.053207694114121296 PHHRSARK 8 Unmodified _PHHRSARK_ 0 0 0 REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF REV__ENST00000272198.10_1_1:203020413-203020764:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 989.0568237304688 1 988.554756 987.54748 -0.34854 -0.00034455 -1.5932 -0.001575 -1.9418 -0.0019196 988.5505891313308 32.915 0.077618 32.756 32.71 32.787 -0.15918 4 2 2 0 0 0 8.7369 1 17137 17137 0.79363 0 1 864310 + 45656 25146 30425 31165 53615 53615 0.053207694114121296 PHIFSISDN 9 Unmodified _PHIFSISDN_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2;ENSG00000109063|ENST00000583535|MYH3;ENSG00000006788|ENST00000252172|MYH13;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7;ENSG00000197616|ENST00000405093|MYH6;ENST00000557461.1_1_14:23869380-23876432:-|nuORF ENSG00000264424|ENST00000255381|MYH4;ENSG00000109063|ENST00000583535|MYH3;ENSG00000006788|ENST00000252172|MYH13;ENSG00000133020|ENST00000403437|MYH8;ENSG00000092054|ENST00000355349|MYH7 ENSG00000264424|ENST00000255381|MYH4 MSMS AL20221201_MKP_PDAC_01 4 515.3074340820312 2 515.253631 1028.49271 NaN NaN NaN NaN NaN NaN NaN 99.472 1 93.297 92.797 93.797 -6.1757 0 0 0 0.3092 1 66259 66259 24.674 10.092 1 45657 10856;2625;4477;1602;352 30426 31166 53616 53616 -0.02039706970504085 PHILGCGVLKF 11 Unmodified _PHILGCGVLKF_ 0 0 0 ENST00000391831.5_1_19:50379316-50379454:-|nuORF ENST00000391831.5_1_19:50379316-50379454:-|nuORF ENST00000391831.5_1_19:50379316-50379454:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.558837890625 3 395.226722 1182.65834 0.13291 5.253E-05 -2.6617 -0.001052 -2.5288 -0.00099944 395.226272983015 39.311 0.3845 39.322 39.084 39.469 0.011456 24 17 2 0 0 0 0.67371 1 20926 20926 3.0723 0.077021 1 1879600 45658 12654 30427 31167 53617 53617 0.07431228284622193 PHILKEMY 8 Oxidation (M) _PHILKEM(Oxidation (M))Y_ PHILKEM(1)Y PHILKEM(64)Y 0 0 1 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7713623046875 2 523.770603 1045.52665 -0.10608 -5.556E-05 0.84008 0.00044001 0.734 0.00038445 523.7707901072855 38.899 0.37202 38.612 38.415 38.787 -0.28687 20 16 2 0 0 0 0.23628 1 20458 20458 64.236 28.192 1 1983700 45659 1863 30428 31168 53618 53618 310 0.005709981968720967 PHILKEMY 8 Unmodified _PHILKEMY_ 0 0 0 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7748413085938 2 515.773145 1029.53174 0.30695 0.00015832 1.9558 0.0010087 2.2627 0.0011671 515.7742943654787 84.565 0.27548 78.389 78.242 78.517 -6.1757 23 15 2 0 0 0 0.17028 1 55613 55613 81.89 51.665 1 8477000 45660 1863 30428 31169 53619 53619 0.018153020594809277 PHILRDSPQP 10 Unmodified _PHILRDSPQP_ 0 0 0 REV__ENST00000366595.7_1_1:236140908-236141082:-|nuORF REV__ENST00000366595.7_1_1:236140908-236141082:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2132263183594 3 387.212128 1158.61456 0.0065559 2.5385E-06 -1.2344 -0.00047799 -1.2279 -0.00047545 387.21187676391344 38.867 0.45432 38.58 38.382 38.836 -0.28687 60 20 5 0 0 0 0.65023 1 20419 20419 8.4443 3.5473 1 30955000 + 45661 25957 30429 31170 53620 53620 0.04159335111830842 PHITQYCHSQ 10 Unmodified _PHITQYCHSQ_ 0 0 0 REV__ENSG00000179270|ENST00000331664|PCARE REV__ENSG00000179270|ENST00000331664|PCARE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.521240234375 3 405.185474 1212.53459 -0.48291 -0.00019567 -0.2363 -9.5745E-05 -0.7192 -0.00029141 405.18551930185737 20.653 0.32593 20.653 20.473 20.799 0 73 24 4 0 0 0 0.72196 1 10334 10334 0.15932 0 1 3890300 + 45662 23089 30430 31171 53621 53621 -0.06317474553657121 PHIVVTPI 8 Unmodified _PHIVVTPI_ 0 0 0 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 REV__nc|ENSG00000033867|Q9Y6M7-12|SLC4A7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 437.7482604980469 2 438.271096 874.527639 1.5694 0.00068784 -0.5844 -0.00025613 0.98503 0.00043171 438.27075582032336 64.29 0.34347 58.114 57.955 58.298 -6.1757 28 17 2 0 0 0 8.7369 1 41667 41667 36.466 8.2929 1 8610900 + 45663 17158 30431 31172 53622 53622 0.08535580628108619 PHKEHLYK 8 Unmodified _PHKEHLYK_ 0 0 0 ENSG00000123892|ENST00000243662|RAB38 ENSG00000123892|ENST00000243662|RAB38 ENSG00000123892|ENST00000243662|RAB38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1052.081298828125 1 1051.56834 1050.56106 0.48133 0.00050615 -1.8841 -0.0019812 -1.4027 -0.0014751 1052.569037835462 33.818 0.06612 33.847 33.792 33.859 0.028934 4 2 2 0 0 0 8.7369 1 17790 17790 0.79363 0 1 755640 45664 3733 30432 31173 53623 53623 0.03780582399986088 PHKEPIRLR 9 Unmodified _PHKEPIRLR_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MSMS AL20221201_MKP_PDAC_01 4 573.3511352539062 2 573.348732 1144.68291 NaN NaN NaN NaN NaN NaN NaN 105.1 1 98.919 98.419 99.419 -6.1757 0 0 0 0.85737 1 70385 70385 0.6015 0 1 45665 2134 30433 31174 53624 53624 0.1163562448234643 PHKFDMVIK 9 Unmodified _PHKFDMVIK_ 0 0 0 REV__ENST00000260318.6_1_11:107375936-107422548:-|nuORF REV__ENST00000260318.6_1_11:107375936-107422548:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.1969299316406 3 372.207438 1113.60049 1.6705 0.00062178 2.3689 0.00088174 4.0395 0.0015035 372.2081052210673 42.594 0.22666 37.909 37.845 38.072 -4.6846 17 14 2 0 0 0 0.20727 1 25803 25803 4.897 3.8255 1 7263900 + 45666 24958 30434 31175 53625 53625 0.048229663591882854 PHKIYEFVNSG 11 Unmodified _PHKIYEFVNSG_ 0 0 0 nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3;nc|ENSG00000126456|Q14653-4|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 nc|ENSG00000126456|Q14653-2|IRF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8878173828125 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 26.073 1 26.042 25.542 26.542 -0.030836 0 0 0 0.92234 1 13395 13395 2.8433 0 1 45667 3947 30435 31176 53626 53626 0.007201845634881465 PHKIYVNTQ 9 Unmodified _PHKIYVNTQ_ 0 0 0 REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5355224609375 3 367.201341 1098.58219 -0.38073 -0.00013981 0.89099 0.00032717 0.51025 0.00018737 367.53620065414253 24.386 0.15692 24.386 24.312 24.469 0 10 7 2 0 0 0 0.61256 1 12489 12489 0.26902 0 1 273920 + 45668 17976 30436 31177 53627 53627 0.03684547708849095 PHKLAESATI 10 Unmodified _PHKLAESATI_ 0 0 0 REV__nc|ENSG00000145349|Q13557-8|CAMK2D REV__nc|ENSG00000145349|Q13557-8|CAMK2D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 355.8662109375 3 356.201229 1065.58186 1.3754 0.00048991 2.8931 0.0010305 4.2684 0.0015204 356.2018894732223 43.128 0.43822 38.363 38.18 38.618 -4.7648 52 30 3 0 0 0 0.23227 1 26337 26337 6.1918 4.5392 1 30511000 + 45669 20768 30437 31178 53628 53628 0.051691279890064834 PHKLIQKRYDK 11 Unmodified _PHKLIQKRYDK_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2823791503906 3 475.949016 1424.82522 0.054239 2.5815E-05 -2.1009 -0.00099993 -2.0467 -0.00097411 475.94825684279107 18.497 0.095463 18.503 18.45 18.545 0.0060463 7 4 2 0 0 0 0.73992 1 9388 9388 0.50596 0 1 1142700 45670 10649 30438 31179 53629 53629 0.12979792433861803 PHKPEKVYW 9 Unmodified _PHKPEKVYW_ 0 0 0 REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF REV__ENST00000395738.2_1_22:50921135-50921831:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3175659179688 2 592.316566 1182.61858 NaN NaN NaN NaN NaN NaN NaN 56.138 1 56.07 55.57 56.57 -0.068737 0 0 0 0.77016 1 30526 30526 6.7232 2.7788 1 + 45671 26482 30439 31180 53630 53630 0.034574246055626645 PHKQTVRH 8 Unmodified _PHKQTVRH_ 0 0 0 REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1002.399536132812 1 1002.55917 1001.5519 0.16527 0.00016569 -1.5643 -0.0015683 -1.399 -0.0014026 1002.5610281197064 31.076 0.115 31.106 31.037 31.152 0.030106 6 4 2 0 0 0 8.7369 1 16254 16254 2.8892 0 1 2101400 + 45672 28483 30440 31181 53631 53631 0.051182338343210176 PHKQTVRH 8 Unmodified _PHKQTVRH_ 0 0 0 REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1002.55917 1001.5519 0.2279 0.00022848 1.7029 0.0017072 1.9308 0.0019357 1003.5622754354006 31.068 0.49713 30.965 30.691 31.188 -0.10269 -0.070774 0.00039975 NaN 2.8892 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3084800 + 45673 28483 30440 31181 0.051182338343210176 PHKRLLKVR 9 Unmodified _PHKRLLKVR_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26;nc|ENSG00000114790|Q96DR7-3|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.8822021484375 2 573.882742 1145.75093 1.6475 0.00094545 -1.7354 -0.00099589 -0.087896 -5.0442E-05 573.8816650097081 103.58 0.094574 97.402 97.366 97.461 -6.1757 19 11 2 0 0 0 0.21893 1 69468 69468 0.52476 0 1 4863800 45674 3063 30441 31182 53632 53632 0.18388494133023414 PHKSGMQTKR 10 Unmodified _PHKSGMQTKR_ 0 0 0 nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13 nc|ENSG00000073803|O43283-5|MAP3K13 nc|ENSG00000073803|O43283-5|MAP3K13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2162475585938 3 390.545113 1168.61351 0.99194 0.0003874 0.46331 0.00018094 1.4553 0.00056834 390.5441341535539 18.372 0.33751 15.75 15.594 15.931 -2.6215 143 29 6 0 0 0 0.65471 1 9741 9741 7.9454 0.33645 1 35145000 45675 1114 30442 31183 53633 53633 0.035947974713053554 PHLCLLKKK 9 Unmodified _PHLCLLKKK_ 0 0 0 REV__ENST00000309137.12_1_16:57188062-57188149:-|nuORF REV__ENST00000309137.12_1_16:57188062-57188149:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2172546386719 3 360.563445 1078.66851 0.028126 1.0141E-05 -1.1794 -0.00042523 -1.1512 -0.00041509 360.56283940935134 34.447 0.4842 34.475 34.184 34.668 0.027401 44 22 3 0 0 0 0.21904 1 18019 18019 0.26902 0 1 5185200 + 45676 25405 30443 31184 53634 53634 0.13231836009867948 PHLCTNSLHL 10 Unmodified _PHLCTNSLHL_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8612060546875 3 378.862331 1133.56516 NaN NaN NaN NaN NaN NaN NaN 22.469 1 22.469 21.969 22.969 0 0 0 0 0.96627 1 11428 11428 2.086 0 1 45677 7529 30444 31185 53635 53635 0.0037230383138648904 PHLDMWNEF 9 Unmodified _PHLDMWNEF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1 ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MSMS AL20221201_MKP_PDAC_01 4 396.8435974121094 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 12.995 1 10.513 10.013 11.013 -2.482 0 0 0 0.85798 1 6581 6581 0.23584 0 1 45678 7898 30445 31186 53636 53636 -0.07927377813894054 PHLEKFHQF 9 Unmodified _PHLEKFHQF_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8726196289062 3 394.873336 1181.59818 -0.039475 -1.5588E-05 -0.3771 -0.00014891 -0.41657 -0.00016449 394.8732198091779 28.948 0.18247 28.978 28.871 29.054 0.030106 10 7 2 0 0 0 0.25297 1 15094 15094 18.146 9.9908 1 2807000 45679 627 30446 31187 53637 53637 0.014642539457554449 PHLEKFHQF 9 Unmodified _PHLEKFHQF_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8745422363281 3 394.873336 1181.59818 1.226 0.00048412 0.93054 0.00036745 2.1566 0.00085157 394.87324548304395 32.219 0.2767 28.363 28.218 28.494 -3.8562 27 16 2 0 0 0 0.009483 1 18345 18345 74.2 53.785 1 15187000 45680 627 30446 31187 53638 53638 0.014642539457554449 PHLEKFHQF 9 Unmodified _PHLEKFHQF_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 394.873336 1181.59818 0.63022 0.00024886 -0.40263 -0.00015899 0.22759 8.9871E-05 394.87314724179174 29.033 0.18496 28.971 28.876 29.061 -0.062159 -0.0035475 -1.696E-05 NaN 18.146 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3870100 45681 627 30446 31187 0.014642539457554449 PHLELGWHK 9 Unmodified _PHLELGWHK_ 0 0 0 nc|ENSG00000160460|Q9H254-2|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;ENSG00000160460|ENST00000598249|SPTBN4 nc|ENSG00000160460|Q9H254-2|SPTBN4 nc|ENSG00000160460|Q9H254-2|SPTBN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8716735839844 3 372.869814 1115.58761 1.7553 0.00065449 1.2072 0.00045013 2.9625 0.0011046 372.8703865191113 21.428 0.46965 18.694 18.465 18.935 -2.7348 110 39 4 0 0 0 0.39863 1 11550 11550 8.1555 3.966 1 38267000 45682 6730 30447 31188 53639 53639 0.034442712913232754 PHLEQITTLM 10 Unmodified _PHLEQITTLM_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8103637695312 2 591.812999 1181.61144 NaN NaN NaN NaN NaN NaN NaN 56.107 1 56.038 55.538 56.538 -0.068737 0 0 0 0.83398 1 30509 30509 10.824 0 1 45683 9827 30448 31189 53640 53640 0.027903239428269444 PHLFFFFAAS 10 Unmodified _PHLFFFFAAS_ 0 0 0 REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF REV__ENST00000174618.4_1_17:2304187-2304379:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2024841308594 3 395.202682 1182.58622 -0.23969 -9.4725E-05 -0.42918 -0.00016961 -0.66887 -0.00026434 395.5367870423176 21.306 0.33255 21.335 21.187 21.52 0.028357 27 16 2 0 0 0 0.71123 1 10879 10879 0.69767 0 1 1376900 + 45684 24717 30449 31190 53641 53641 0.002226372025688761 PHLFLYCIF 9 Unmodified _PHLFLYCIF_ 0 0 0 ENST00000513322.5_1_5:115176765-115176948:-|nuORF ENST00000513322.5_1_5:115176765-115176948:-|nuORF ENST00000513322.5_1_5:115176765-115176948:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.1271362304688 2 576.799163 1151.58377 1.03 0.00059412 0.86545 0.00049919 1.8955 0.0010933 576.7999203063957 80.155 0.37696 79.666 79.507 79.884 -0.48932 18 14 2 0 0 0 0.21798 1 43859 43859 2.3027 0 1 467900 45685 14637 30450 31191 53642 53642 0.014044654732515482 PHLGAGAW 8 Unmodified _PHLGAGAW_ 0 0 0 REV__ENST00000215793.12_1_22:30731513-30731692:-|nuORF REV__ENST00000215793.12_1_22:30731513-30731692:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.7084045410156 2 404.708663 807.402772 NaN NaN NaN NaN NaN NaN NaN 37.537 1 33.254 32.754 33.754 -4.2835 0 0 0 0.97444 1 22043 22043 2.8892 0 1 + 45686 24731 30451 31192 53643 53643 -0.008632917884369817 PHLGGRCPHL 10 Unmodified _PHLGGRCPHL_ 0 0 0 REV__ENST00000522293.5_1_5:179225047-179225996:-|nuORF REV__ENST00000522293.5_1_5:179225047-179225996:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7848510742188 2 543.78491 1085.55527 NaN NaN NaN NaN NaN NaN NaN 57.658 1 57.169 56.669 57.669 -0.48974 0 0 0 0.41918 1 31338 31338 30.225 3.3412 1 + 45687 28300 30452 31193 53644 53644 0.01591160616681009 PHLHISVFVF 10 Unmodified _PHLHISVFVF_ 0 0 0 ENST00000493871.1_1_X:154012222-154014489:-|nuORF ENST00000493871.1_1_X:154012222-154014489:-|nuORF ENST00000493871.1_1_X:154012222-154014489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2253723144531 3 399.225598 1194.65496 0.1244 4.9662E-05 0.23731 9.474E-05 0.3617 0.0001444 399.2256735745629 59.854 0.26306 59.801 59.655 59.918 -0.053059 36 12 4 0 0 0 0.68844 2 32599 32599;32699 4.1895 1.1172 1 15042000 45688 14325 30453 31194 53645;53646 53645 0.06542301502258852 PHLHLRPHI 9 Unmodified _PHLHLRPHI_ 0 0 0 ENST00000595618.5_2_19:17323164-17323401:+|nuORF ENST00000595618.5_2_19:17323164-17323401:+|nuORF ENST00000595618.5_2_19:17323164-17323401:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.5397033691406 3 373.88932 1118.64613 1.6366 0.00061191 -0.79943 -0.0002989 0.83717 0.00031301 373.88866619217606 21.797 0.34496 19.062 18.813 19.158 -2.7348 32 18 3 0 0 0 0.21767 1 11555 11555 1.1933 0 1 1797200 45689 15760 30454 31195 53647 53647 0.09155372656437066 PHLISSPSF 9 Unmodified _PHLISSPSF_ 0 0 0 REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF REV__ENST00000370210.3_2_X:152736080-152736602:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.5705871582031 2 492.761092 983.507631 1.6482 0.00081215 -1.3544 -0.00066741 0.29373 0.00014474 492.76080558795667 50.268 0.20374 50.22 50.107 50.31 -0.048824 14 9 2 0 0 0 0.20528 1 27162 27162 8.5933 0 1 986050 + 45690 26054 30455 31196 53648 53648 0.015217848974771186 PHLKHVCYIF 10 Unmodified _PHLKHVCYIF_ 0 0 0 REV__ENST00000477973.3_2_3:72427117-72427282:-|nuORF REV__ENST00000477973.3_2_3:72427117-72427282:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8921813964844 3 419.558471 1255.65358 0.65047 0.00027291 -1.1512 -0.00048299 -0.50071 -0.00021008 419.55799892503285 38.7 0.32344 34.249 34.056 34.379 -4.4509 36 20 2 0 0 0 0.6192 1 22930 22930 10.151 10.151 1 18921000 + 45691 27621 30456 31197 53649 53649 0.0359834414184661 PHLKQHQVF 9 Unmodified _PHLKQHQVF_ 0 0 0 REV__ENSG00000172888|ENST00000339296|ZNF621 REV__ENSG00000172888|ENST00000339296|ZNF621 MSMS AL20221201_MKP_PDAC_01 4 378.5453796386719 3 378.545331 1132.61416 NaN NaN NaN NaN NaN NaN NaN 72.204 1 66.028 65.528 66.528 -6.1757 0 0 0 0.57317 1 47247 47247 8.7454 0 1 + 45692 22683 30457 31198 53650 53650 0.05315960182656454 PHLLDPHLE 9 Unmodified _PHLLDPHLE_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.5260925292969 3 357.525825 1069.55564 -0.29984 -0.0001072 1.2397 0.00044322 0.93986 0.00033602 357.5262292371749 29.318 0.22929 29.318 29.182 29.411 0 26 10 3 0 0 0 0.39863 1 15195 15195 8.1555 0.8663 1 2532100 45693 5350;30184 30458 31199 53651 53651 0.023648588175319674 PHLMQPRK 8 Unmodified _PHLMQPRK_ 0 0 0 ENST00000547021.1_1_12:112037345-112037733:+|nuORF ENST00000547021.1_1_12:112037345-112037733:+|nuORF ENST00000547021.1_1_12:112037345-112037733:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1006.906616210938 1 1006.56148 1005.5542 0.41785 0.00042059 0.99854 0.0010051 1.4164 0.0014257 1006.5605750137038 29.025 0.30727 29.055 28.967 29.274 0.030106 13 12 2 0 0 0 8.7369 1 15116 15116 2.8892 0 1 3177500 45694 15116 30459 31200 53652 53652 0.05164946247782609 PHLMSQFYF 9 Unmodified _PHLMSQFYF_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MSMS AL20221201_MKP_PDAC_01 4 390.521484375 3 390.519794 1168.53755 NaN NaN NaN NaN NaN NaN NaN 27.603 1 24.566 24.066 25.066 -3.0365 0 0 0 0.73776 1 15309 15309 8.1555 3.6267 1 + 45695 22551 30460 31201 53653 53653 -0.03997599428839749 PHLPGKTF 8 Unmodified _PHLPGKTF_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7540588378906 2 448.75307 895.491587 1.2344 0.00055392 0.24664 0.00011068 1.481 0.0006646 448.7530866000968 47.3 0.24757 47.261 47.138 47.385 -0.038647 19 11 2 0 0 0 0.15594 1 25468 25468 85.272 49.228 1 2285100 45696 8482 30461 31202 53654 53654 0.03966123451243675 PHLPHGVS 8 Unmodified _PHLPHGVS_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2273254394531 2 422.22722 842.439886 0.048086 2.0303E-05 1.3732 0.00057979 1.4212 0.00060009 422.2275663105718 54.708 0.43115 54.241 53.989 54.42 -0.46664 54 21 3 0 0 0 0.80975 1 29566 29566 0.79363 0 1 9739900 45697 349 30462 31203 53655 53655 0.01236379757335726 PHLPHNSL 8 Unmodified _PHLPHNSL_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7463989257812 2 457.745776 913.477 0.20669 9.4611E-05 1.2302 0.00056311 1.4369 0.00065772 457.74619680787094 70.657 0.231 70.18 70.119 70.35 -0.47735 21 12 2 0 0 0 0.80143 1 38653 38653 5.7604 0.52976 1 1868500 45698 778 30463 31204 53656 53656 0.016800513030943875 PHLPHPPDSKP 11 Unmodified _PHLPHPPDSKP_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8843383789062 3 407.884012 1220.63021 1.0611 0.0004328 0.32088 0.00013088 1.382 0.00056369 407.8840721977482 34.767 0.48099 30.672 30.473 30.954 -4.0951 53 28 2 0 0 0 0.47137 2 20150 19992;20150 17.863 4.9906 1 22352000 45699 4931 30464 31205 53657;53658 53658 0.028716216289012664 PHLQGISL 8 Unmodified _PHLQGISL_ 0 0 0 ENST00000368190.7_1_1:157516812-157522183:-|nuORF ENST00000368190.7_1_1:157516812-157522183:-|nuORF ENST00000368190.7_1_1:157516812-157522183:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7513732910156 2 432.750527 863.486502 0.60358 0.0002612 -0.16093 -6.9643E-05 0.44264 0.00019155 432.7504846903499 46.826 0.29683 46.489 46.327 46.624 -0.33664 31 14 3 0 0 0 0.37649 1 25053 25053 46.921 2.5139 1 6465400 45700 12260 30465 31206 53659 53659 0.04929819588630835 PHLQGISL 8 Unmodified _PHLQGISL_ 0 0 0 ENST00000368190.7_1_1:157516812-157522183:-|nuORF ENST00000368190.7_1_1:157516812-157522183:-|nuORF ENST00000368190.7_1_1:157516812-157522183:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 432.750527 863.486502 0.36072 0.0001561 0.071879 3.1106E-05 0.4326 0.00018721 432.750714256795 46.688 0.23911 46.688 46.523 46.762 0 0.099359 9.5951E-05 NaN 46.921 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1384200 45701 12260 30465 31206 0.04929819588630835 PHLQSACDFTI 11 Unmodified _PHLQSACDFTI_ 0 0 0 REV__ENST00000392011.6_1_2:235964007-235964214:+|nuORF REV__ENST00000392011.6_1_2:235964007-235964214:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.199462890625 3 411.197379 1230.57031 1.0239 0.00042102 1.3851 0.00056957 2.409 0.00099059 411.1983301679177 22.141 0.83017 19.406 18.935 19.765 -2.7348 81 45 3 0 0 0 0.68427 1 11718 11718 2.6312 0.72486 1 6884500 + 45702 26383 30466 31207 53660 53660 -0.035754370966515125 PHLSLAYEDK 10 Unmodified _PHLSLAYEDK_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7998657226562 2 586.800946 1171.58734 0.45437 0.00026663 -0.044501 -2.6113E-05 0.40987 0.00024051 586.8009648214911 83.015 0.31128 82.517 82.331 82.642 -0.49751 23 12 2 0 0 0 0.68074 1 45406 45406 8.7454 3.0136 1 2210600 45703 7870 30467 31208 53661 53661 0.008408067807977204 PHLTFSHS 8 Unmodified _PHLTFSHS_ 0 0 0 ENST00000340149.6_1_11:77929679-77929994:-|nuORF ENST00000340149.6_1_11:77929679-77929994:-|nuORF ENST00000340149.6_1_11:77929679-77929994:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 463.2792358398438 2 463.229959 924.445365 NaN NaN NaN NaN NaN NaN NaN 96.509 1 90.333 89.833 90.833 -6.1757 0 0 0 0.85111 1 63958 63958 20.871 2.7362 1 45704 11959 30468 31209 53662 53662 -0.01987941450852304 PHLVHAEL 8 Unmodified _PHLVHAEL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000568636.5_1_16:722693-723603:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2561340332031 2 458.255977 914.497401 0.19157 8.7787E-05 1.3864 0.00063534 1.578 0.00072313 458.25647596115374 48.91 0.24572 48.538 48.427 48.673 -0.37172 28 12 3 0 0 0 0.078553 1 26283 26283 112.56 62.89 1 2414700 45705 5289 30469 31210 53663 53663 0.03673221962901607 PHLVRQGP 8 Unmodified _PHLVRQGP_ 0 0 0 ENST00000272139.4_1_1:228289171-228290722:-|nuORF;ENST00000472617.5_1_1:228289594-228290722:-|nuORF;ENST00000491293.1_1_1:228289948-228290722:-|nuORF;ENST00000465199.5_1_1:228289759-228291133:-|nuORF ENST00000272139.4_1_1:228289171-228290722:-|nuORF ENST00000272139.4_1_1:228289171-228290722:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2611389160156 2 452.261594 902.508634 -0.35197 -0.00015918 -0.30796 -0.00013928 -0.65993 -0.00029846 452.2613856778365 34.405 0.13932 34.214 34.152 34.291 -0.19131 7 5 2 0 0 0 0.6895 1 18005 18005 18.135 1.1927 1 2106900 45706 11369 30470 31211 53664 53664 0.05348044057052448 PHLYHLWYR 9 Unmodified _PHLYHLWYR_ 0 0 0 REV__ENSG00000117411|ENST00000372324|B4GALT2 REV__ENSG00000117411|ENST00000372324|B4GALT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.8912353515625 3 428.89273 1283.65636 NaN NaN NaN NaN NaN NaN NaN 41.083 1 41.083 40.583 41.583 0 0 0 0 0.85261 1 22129 22129 1.1933 0.41681 1 + 45707 19103 30471 31212 53665 53665 0.025879355910319646 PHLYHQVYL 9 Unmodified _PHLYHQVYL_ 0 0 0 nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 nc|ENSG00000240184|Q9UN70-2|PCDHGC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.54296875 3 390.541586 1168.60293 -0.53962 -0.00021074 4.4374 0.001733 3.8978 0.0015222 390.5435434250364 16.432 0.015171 16.433 16.422 16.438 0.0010548 6 4 2 0 0 0 0.61256 1 8105 8105 0.26902 0 1 336220 45708 10670 30472 31213 53666 53666 0.025371380885189865 PHLYLGSQ 8 Unmodified _PHLYLGSQ_ 0 0 0 ENSG00000184545|ENST00000397374|DUSP8;ENST00000422884.1_1_10:75491660-75492464:+|nuORF ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7404174804688 2 457.74016 913.465767 NaN NaN NaN NaN NaN NaN NaN 17.307 1 17.321 16.821 17.821 0.013865 0 0 0 0.97444 1 8595 8595 4.3292 0 1 45709 9267 30473 31214 53667 53667 0.005572292089595976 PHLYRRLGR 9 Unmodified _PHLYRRLGR_ 0 0 0 ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF ENSG00000074855|ENST00000159087|ANO8 ENSG00000074855|ENST00000159087|ANO8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3467407226562 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 104.5 1 104.45 103.95 104.95 -0.048737 0 0 0 0.85798 1 58021 58021 0.52476 0 1 45710 1137 30474 31215 53668 53668 0.10182160059480339 PHMDDDDNSI 10 Unmodified _PHMDDDDNSI_ 0 0 0 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 REV__nc|ENSG00000155034|Q96ME1-5|FBXL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8185729980469 3 386.817115 1157.42952 1.5403 0.0005958 1.8975 0.00073398 3.4378 0.0013298 386.8179489354224 20.668 0.382 17.975 17.742 18.124 -2.693 43 23 2 0 0 0 0.70951 1 11046 11046 0.77653 0 1 3151700 + 45711 29716 30475 31216 53669 53669 -0.14290060540747618 PHMKGNHF 8 Unmodified _PHMKGNHF_ 0 0 0 REV__nc|ENSG00000165682|Q9P126-2|CLEC1B REV__nc|ENSG00000165682|Q9P126-2|CLEC1B MSMS AL20221201_MKP_PDAC_01 4 484.2313842773438 2 484.231979 966.449405 NaN NaN NaN NaN NaN NaN NaN 50.756 1 45.107 44.607 45.607 -5.649 0 0 0 0.34053 1 31880 31880 59.795 3.2539 1 + 45712 22036 30476 31217 53670 53670 -0.03516175228787688 PHMLETYTPE 10 Unmodified _PHMLETYTPE_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2786865234375 2 609.278989 1216.54342 0.40222 0.00024506 -3.2092 -0.0019553 -2.8069 -0.0017102 609.2769487572237 73.825 0.23389 73.825 73.688 73.922 0 17 9 2 0 0 0 0.66569 1 41093 41093 6.7232 0.99131 1 572390 45713 4191 30477 31218 53671 53671 -0.056185457078299805 PHMLSGKSEF 10 Unmodified _PHMLSGKSEF_ 0 0 0 ENST00000287263.8_1_8:37720252-37720345:-|nuORF ENST00000287263.8_1_8:37720252-37720345:-|nuORF ENST00000287263.8_1_8:37720252-37720345:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7745971679688 2 566.776416 1131.53828 NaN NaN NaN NaN NaN NaN NaN 36.708 1 36.459 35.959 36.959 -0.2497 0 0 0 0.95103 1 19269 19269 5.7319 0.43497 1 45714 11446 30478 31219 53672 53672 -0.022228047797852923 PHMRPRRP 8 Unmodified _PHMRPRRP_ 0 0 0 nc|ENSG00000186205|Q5VT66-3|MTARC1;ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1 nc|ENSG00000186205|Q5VT66-3|MTARC1 nc|ENSG00000186205|Q5VT66-3|MTARC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1045.579956054688 1 1046.57886 1045.57159 -0.21146 -0.00022131 -0.25423 -0.00026607 -0.46569 -0.00048739 1047.586386389357 32.261 0.224 32.132 32.042 32.266 -0.12915 10 7 2 0 0 0 0.80975 1 16774 16774 0.79363 0 1 1697100 45715 9461 30479 31220 53673 53673 0.05062286573433994 PHMRPRRP 8 Unmodified _PHMRPRRP_ 0 0 0 nc|ENSG00000186205|Q5VT66-3|MTARC1;ENSG00000186205|ENST00000366910|MTARC1;nc|ENSG00000186205|Q5VT66-2|MTARC1 nc|ENSG00000186205|Q5VT66-3|MTARC1 nc|ENSG00000186205|Q5VT66-3|MTARC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1046.57886 1045.57159 0.25164 0.00026336 -5.2714 -0.0055169 -5.0198 -0.0052536 1047.575792563772 32.499 0.069935 32.529 32.492 32.562 0.029743 0.19862 -0.00077587 NaN 0.79363 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 943970 45716 9461 30479 31220 0.05062286573433994 PHNCCKRLQM 10 Unmodified _PHNCCKRLQM_ 0 0 0 REV__nc|ENSG00000102038|P28370-2|SMARCA1 REV__nc|ENSG00000102038|P28370-2|SMARCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.2852172851562 2 615.288645 1228.56274 NaN NaN NaN NaN NaN NaN NaN 15.887 1 15.887 15.387 16.387 0 0 0 0 0.92825 1 7696 7696 6.7232 0.51738 1 + 45717 18217 30480 31221 53674 53674 -0.042401911695833405 PHNSSSRFDC 10 Unmodified _PHNSSSRFDC_ 0 0 0 nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3;nc|ENSG00000261832|Q13286-5|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-6|CLN3 nc|ENSG00000261832|Q13286-4|CLN3 nc|ENSG00000261832|Q13286-4|CLN3 MSMS AL20221201_MKP_PDAC_01 4 384.1650695800781 3 383.829578 1148.46691 NaN NaN NaN NaN NaN NaN NaN 93.265 1 87.089 86.589 87.589 -6.1757 0 0 0 0.89532 1 61720 61720 4.7159 0 1 45718 9674 30481 31222 53675 53675 -0.101389244844313 PHPDVCFLPPF 11 Unmodified _PHPDVCFLPPF_ 0 0 0 ENST00000427826.1_1_6:33382858-33383628:+|nuORF;ENST00000374512.7_2_6:33381598-33383628:+|nuORF ENST00000427826.1_1_6:33382858-33383628:+|nuORF ENST00000427826.1_1_6:33382858-33383628:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5426330566406 3 423.542598 1267.60597 0.60181 0.00025489 0.18072 7.6541E-05 0.78253 0.00033143 423.542710955476 67.779 0.4909 67.297 66.985 67.475 -0.48218 47 21 4 0 0 0 0.71259 1 37105 37105 3.0723 3.0723 1 5261800 45719 12448 30482 31223 53676 53676 -0.01713354848993731 PHPFQFSWS 9 Unmodified _PHPFQFSWS_ 0 0 0 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.7254028320312 3 378.178536 1131.51378 0.47443 0.00017942 -0.11671 -4.4135E-05 0.35773 0.00013529 378.1782884578962 71.184 0.24777 70.706 70.568 70.816 -0.47735 18 10 2 0 0 0 0.21889 1 38913 38913 0.26902 0 1 1037400 + 45720 20046 30483 31224 53677 53677 -0.04671696870991582 PHPGGPGG 8 Unmodified _PHPGGPGG_ 0 0 0 REV__ENST00000448120.6_1_12:3050000-3050282:+|nuORF REV__ENST00000448120.6_1_12:3050000-3050282:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.32373046875 1 675.320899 674.313623 0.26808 0.00018104 2.0513 0.0013853 2.3194 0.0015663 675.3223095175331 57.099 0.51583 57.099 56.855 57.371 0 32 22 2 0 0 0 0.80975 2 31716 31716;31827 0.79363 0 1 1649100 + 45721 27169 30484 31225 53678;53679 53678 -0.036561267479441995 PHPLAHSE 8 Unmodified _PHPLAHSE_ 0 0 0 REV__ENST00000264025.7_1_11:119534550-119534718:-|nuORF REV__ENST00000264025.7_1_11:119534550-119534718:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2232971191406 2 444.222134 886.429715 NaN NaN NaN NaN NaN NaN NaN 26.138 1 26.165 25.665 26.665 0.026951 0 0 0 0.97444 1 13551 13551 0.79363 0 1 + 45722 25054 30485 31226 53680 53680 -0.018042279679093554 PHPLLIAQVK 10 Unmodified _PHPLLIAQVK_ 0 0 0 REV__ENST00000421540.1_1_20:34280185-34287249:-|nuORF REV__ENST00000421540.1_1_20:34280185-34287249:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3518676757812 2 558.350409 1114.68626 1.7177 0.00095906 -0.27502 -0.00015356 1.4426 0.0008055 558.3499818209771 106.74 0.87495 100.57 99.891 100.77 -6.1757 250 150 3 0 0 0 0.72196 1 71280 71280 0.45834 0.057624 1 7565500 + 45723 26846 30486 31227 53681 53681 0.1335087453635424 PHPLLRLLR 9 Unmodified _PHPLLRLLR_ 0 0 0 ENST00000394963.8_1_12:50494063-50494228:+|nuORF ENST00000394963.8_1_12:50494063-50494228:+|nuORF ENST00000394963.8_1_12:50494063-50494228:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2213745117188 3 372.245104 1113.71348 0.3338 0.00012426 -0.16955 -6.3115E-05 0.16425 6.1141E-05 372.24493794016655 49.156 0.3885 49.112 48.867 49.255 -0.04369 24 18 2 0 0 0 0.21904 1 26465 26465 0.26902 0 1 861090 45724 12751 30487 31228 53682 53682 0.16117402867394048 PHPPLAIA 8 Unmodified _PHPPLAIA_ 0 0 0 ENST00000592208.5_1_19:10433104-10439782:-|nuORF ENST00000592208.5_1_19:10433104-10439782:-|nuORF ENST00000592208.5_1_19:10433104-10439782:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 815.4758911132812 1 815.4774 814.470124 1.8199 0.0014841 -0.64295 -0.00052431 1.177 0.00095979 815.4759888562104 104.56 0.070312 98.382 98.327 98.398 -6.1757 7 4 2 0 0 0 0.81107 1 70012 70012 0 0 1 5601600 45725 15717 30488 31229 53683 53683 0.05546738422492581 PHPPLARTRT 10 Unmodified _PHPPLARTRT_ 0 0 0 ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD ENSG00000185800|ENST00000270223|DMWD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5769958496094 3 382.556118 1144.64652 0.3508 0.0001342 3.1321 0.0011982 3.4829 0.0013324 382.55692684150034 48.26 0.24231 48.221 48.083 48.326 -0.038643 19 11 2 0 0 0 0.23412 1 26083 26083 5.4027 3.4963 1 3019800 45726 9413 30489 31230 53684 53684 0.07998747585611454 PHPPPSGPNAP 11 Unmodified _PHPPPSGPNAP_ 0 0 0 REV__ENST00000495994.5_1_1:64971604-64972057:+|nuORF REV__ENST00000495994.5_1_1:64971604-64972057:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.267333984375 2 534.267073 1066.51959 -0.41061 -0.00021938 0.19212 0.00010264 -0.2185 -0.00011673 534.2670980702582 20.509 0.18774 20.538 20.455 20.643 0.028357 15 9 2 0 0 0 0.71036 1 10374 10374 3.2813 0.70383 1 1032400 + 45727 27958 30490 31231 53685 53685 -0.01100598359334981 PHPRSRRY 8 Unmodified _PHPRSRRY_ 0 0 0 nc|ENSG00000185340|Q99501|GAS2L1;ENSG00000185340|ENST00000616432|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 nc|ENSG00000185340|Q99501|GAS2L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.2132568359375 3 356.865175 1067.57369 1.8098 0.00064585 0.70367 0.00025111 2.5135 0.00089697 356.865243414235 20.139 0.26888 17.482 17.275 17.544 -2.6564 28 18 2 0 0 0 8.7369 1 10682 10682 4.3292 0.38484 1 2516800 45728 9364 30491 31232 53686 53686 0.04261038582899346 PHPRSVKMF 9 Unmodified _PHPRSVKMF_ 0 0 0 REV__ENSG00000184178|ENST00000401642|SCFD2 REV__ENSG00000184178|ENST00000401642|SCFD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.1948852539062 3 366.867416 1097.58042 1.2588 0.0004618 1.067 0.00039146 2.3258 0.00085326 366.8679376196353 22.373 0.31019 19.615 19.447 19.757 -2.7589 27 16 2 0 0 0 0.21798 1 11936 11936 1.1933 0.92432 1 3949800 + 45729 23403 30492 31233 53687 53687 0.03553215419265143 PHPTMFTCY 9 Unmodified _PHPTMFTCY_ 0 0 0 ENST00000490863.5_1_1:54650890-54651175:-|nuORF ENST00000490863.5_1_1:54650890-54651175:-|nuORF ENST00000490863.5_1_1:54650890-54651175:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7330932617188 2 548.733163 1095.45177 -0.22984 -0.00012612 0.42078 0.00023089 0.19093 0.00010477 548.7333231306047 25.885 0.53183 25.885 25.613 26.145 0 93 24 5 0 0 0 0.49272 1 13393 13393 7.9102 1.187 1 62667000 45730 14269 30493 31234 53688 53688 -0.09213507606023086 PHPVGQQLASF 11 Unmodified _PHPVGQQLASF_ 0 0 0 ENST00000369787.7_1_1:110775187-110775409:+|nuORF ENST00000369787.7_1_1:110775187-110775409:+|nuORF ENST00000369787.7_1_1:110775187-110775409:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2089538574219 3 394.208495 1179.60366 0.79706 0.00031421 0.45485 0.00017931 1.2519 0.00049352 394.20827598973415 17.783 0.79491 15.197 15.084 15.879 -2.5866 122 72 2 0 0 0 0.68427 1 9600 9600 2.6312 0 1 2841100 45731 12315 30494 31235 53689 53689 0.021039327375319772 PHPVLGRP 8 Unmodified _PHPVLGRP_ 0 0 0 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.759521484375 2 436.758687 871.502821 0.31841 0.00013907 1.1825 0.00051646 1.5009 0.00065553 436.7590972020097 69.258 0.33843 69.258 69.084 69.423 0 31 14 3 0 0 0 0.80676 1 38572 38572 2.5775 0 1 2322900 45732 3703 30495 31236 53690 53690 0.061929455453764604 PHPVLGRP 8 Unmodified _PHPVLGRP_ 0 0 0 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7599182128906 2 436.758687 871.502821 0.78005 0.00034069 1.5199 0.00066381 2.2999 0.0010045 436.7591955379067 69.024 0.38135 69.055 68.846 69.227 0.030914 49 18 4 0 0 0 0.80676 2 37888 37888;37991 2.5775 0 1 22313000 45733 3703 30495 31236 53691;53692 53691 0.061929455453764604 PHPVLGRP 8 Unmodified _PHPVLGRP_ 0 0 0 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 ENSG00000123364|ENST00000243056|HOXC13 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.758687 871.502821 0.31841 0.00013907 1.1825 0.00051646 1.5009 0.00065553 436.7590972020097 69.258 0.33843 69.258 69.084 69.423 0 -0.081797 8.2028E-05 NaN 2.5775 31 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2322900 45734 3703 30495 31236 0.061929455453764604 PHQCRRFRQ 9 Unmodified _PHQCRRFRQ_ 0 0 0 nc|ENSG00000168065|Q9NSA0-2|SLC22A11;nc|ENSG00000197891|Q96S37-2|SLC22A12;nc|ENSG00000197891|Q96S37-4|SLC22A12;ENSG00000168065|ENST00000301891|SLC22A11;ENSG00000197891|ENST00000377574|SLC22A12 nc|ENSG00000168065|Q9NSA0-2|SLC22A11 nc|ENSG00000168065|Q9NSA0-2|SLC22A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3175659179688 2 614.31744 1226.62033 NaN NaN NaN NaN NaN NaN NaN 31.648 1 31.648 31.148 32.148 0 0 0 0 0.85737 1 16493 16493 0.6015 0 1 45735 7713 30496 31237 53693 53693 0.016081551425259022 PHQCTWCE 8 Unmodified _PHQCTWCE_ 0 0 0 REV__ENST00000269701.6_1_19:15484872-15487815:-|nuORF REV__ENST00000269701.6_1_19:15484872-15487815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.190673828125 2 502.191662 1002.36877 -0.085995 -4.3186E-05 -0.12368 -6.2113E-05 -0.20968 -0.0001053 502.19162897073164 25.186 0.60847 25.186 25.005 25.613 0 48 31 2 0 0 0 0.80975 1 13062 13062 0.79363 0 1 1005400 + 45736 25129 30497 31238 53694 53694 -0.1323182433401371 PHQKHIVQT 9 Unmodified _PHQKHIVQT_ 0 0 0 REV__nc|ENSG00000198589|P50851-2|LRBA REV__nc|ENSG00000198589|P50851-2|LRBA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.1877136230469 3 363.205085 1086.59343 0.82657 0.00030022 -0.21086 -7.6587E-05 0.61571 0.00022363 363.2048912773819 15.054 0.10458 12.527 12.453 12.558 -2.5273 22 15 2 0 0 0 0.20554 1 7697 7697 9.3831 6.3879 1 2231100 + 45737 24028 30498 31239 53695 53695 0.05359369802999936 PHQNQAKL 8 Unmodified _PHQNQAKL_ 0 0 0 ENSG00000109805|ENST00000251496|NCAPG;ENST00000513226.1_1_4:17812700-17814869:+|nuORF ENSG00000109805|ENST00000251496|NCAPG ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2555236816406 2 468.256508 934.498464 0.48539 0.00022729 -2.3032 -0.0010785 -1.8178 -0.00085119 468.255264808608 83.705 0.33418 83.208 83.007 83.341 -0.49751 22 13 2 0 0 0 0.80676 1 45794 45794 2.5775 0 1 892980 45738 2676 30499 31240 53696 53696 0.0285943633180068 PHQPIQRV 8 Unmodified _PHQPIQRV_ 0 0 0 ENST00000471540.5_1_21:46685971-46687525:-|nuORF ENST00000471540.5_1_21:46685971-46687525:-|nuORF ENST00000471540.5_1_21:46685971-46687525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.5564575195312 1 974.553025 973.545748 0.4611 0.00044937 -1.4482 -0.0014113 -0.98706 -0.00096194 974.5549960100485 21.964 0.12164 21.978 21.941 22.063 0.013796 6 4 2 0 0 0 0.80624 1 11288 11288 2.8892 0 1 485120 45739 13878 30500 31241 53697 53697 0.05791715602799741 PHQPKKKG 8 Unmodified _PHQPKKKG_ 0 0 0 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2765502929688 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 102.84 1 102.79 102.29 103.29 -0.047928 0 0 0 0.97444 1 57116 57116 0.69038 0 1 45740 6694 30501 31242 53698 53698 0.07740617091133117 PHQQHHHHH 9 Unmodified _PHQQHHHHH_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.51708984375 3 398.851928 1193.53395 -0.49153 -0.00019605 -0.30115 -0.00012011 -0.79268 -0.00031616 398.8518888409781 19.24 0.2531 19.263 19.088 19.341 0.023106 27 14 3 0 0 0 0.21798 1 9647 9647 1.1933 0 1 1722100 45741 712 30502 31243 53699 53699 -0.05507088367835422 PHQQPPPT 8 Unmodified _PHQQPPPT_ 0 0 0 REV__nc|ENSG00000166889|Q86TB9-2|PATL1 REV__nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 450.8584899902344 2 451.229959 900.445365 1.0169 0.00045885 -0.35524 -0.0001603 0.66165 0.00029856 451.2296112180209 19.008 0.16995 16.386 16.32 16.49 -2.6215 15 10 2 0 0 0 8.7369 1 10070 10070 24.674 0 1 1342400 + 45742 22163 30503 31244 53700 53700 -0.008839414508543086 PHQTFVRL 8 Unmodified _PHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2815551757812 2 499.282526 996.550499 NaN NaN NaN NaN NaN NaN NaN 36.923 1 36.945 36.445 37.445 0.021545 0 0 0 0.62748 1 19582 19582 32.305 3.8186 1 45743 3388 30504 31245 53701 53701 0.05208599745560605 PHRAPAPAWL 10 Unmodified _PHRAPAPAWL_ 0 0 0 REV__ENST00000541252.1_1_11:63975337-63978563:+|nuORF REV__ENST00000541252.1_1_11:63975337-63978563:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.758544921875 2 558.309075 1114.6036 0.68276 0.00038119 -1.7133 -0.00095655 -1.0305 -0.00057536 558.3088025721219 38.485 0.15157 38.485 38.426 38.577 0 12 7 2 0 0 0 0.23227 1 20613 20613 3.5965 0 1 2861600 + 45744 28596 30505 31246 53702 53702 0.05087977528205556 PHRCLSYSPG 10 Unmodified _PHRCLSYSPG_ 0 0 0 ENST00000484457.5_1_3:33416838-33418797:+|nuORF ENST00000484457.5_1_3:33416838-33418797:+|nuORF ENST00000484457.5_1_3:33416838-33418797:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.8316040039062 2 558.766383 1115.51821 0.33664 0.0001881 -3.3872 -0.0018927 -3.0506 -0.0017046 558.7651875164233 38.018 0.18962 38.035 37.881 38.071 0.01704 11 8 2 0 0 0 0.23227 1 20189 20189 10.824 0.75 1 905250 45745 14153 30506 31247 53703 53703 -0.034925557197766466 PHRDYAYRDY 10 Unmodified _PHRDYAYRDY_ 0 0 0 nc|ENSG00000234414|P0DJD3-3|RBMY1A1;nc|ENSG00000226941|Q15415-2|RBMY1F;nc|ENSG700|P0DJD4|RBMY1C;ENSG00000244395|ENST00000382680|RBMY1D;ENSG00000242875|ENST00000383020|RBMY1B;ENSG00000242389|ENST00000382659|RBMY1E;ENSG00000234414|ENST00000382707|RBMY1A1;ENSG00000226941|ENST00000250831|RBMY1J;ENSG00000169800|ENST00000303766|RBMY1F nc|ENSG00000234414|P0DJD3-3|RBMY1A1 nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.8114624023438 2 678.31 1354.60545 0.23203 0.00015739 0.68272 0.00046309 0.91475 0.00062049 678.8116336663081 54.118 0.3761 53.651 53.446 53.822 -0.46664 56 18 4 0 0 0 0.67459 1 29250 29250 5.7319 0.43497 1 6877000 45746 7917 30507 31248 53704 53704 -0.05767058244487089 PHREFCGLH 9 Unmodified _PHREFCGLH_ 0 0 0 ENST00000481728.2_1_8:25209179-25216534:+|nuORF ENST00000481728.2_1_8:25209179-25216534:+|nuORF ENST00000481728.2_1_8:25209179-25216534:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.8433227539062 3 365.843271 1094.50798 NaN NaN NaN NaN NaN NaN NaN 12.064 1 9.5818 9.0818 10.082 -2.482 0 0 0 0.84369 1 6085 6085 1.1933 0 1 45747 14089 30508 31249 53705 53705 -0.03549118654314043 PHRGPPCL 8 Unmodified _PHRGPPCL_ 0 0 0 REV__ENST00000418339.5_2_22:38147125-38150984:+|nuORF REV__ENST00000418339.5_2_22:38147125-38150984:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7289733886719 2 438.729072 875.443591 NaN NaN NaN NaN NaN NaN NaN 19.466 1 19.466 18.966 19.966 0 0 0 0 0.9706 1 9734 9734 6.3541 0 1 + 45748 26801 30509 31250 53706 53706 0.0008872625951426016 PHRHHRRN 8 Unmodified _PHRHHRRN_ 0 0 0 REV__ENSG00000153989|ENST00000368494|NUS1 REV__ENSG00000153989|ENST00000368494|NUS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.30078125 2 555.300439 1108.58632 0.4741 0.00026327 0.13672 7.5921E-05 0.61082 0.00033919 555.3003710533958 90.787 0.1609 90.787 90.672 90.833 0 9 6 2 0 0 0 0.81107 1 50208 50208 0 0 1 257540 + 45749 21201 30510 31251 53707 53707 0.0363749476580324 PHRKKRFLFLY 11 Unmodified _PHRKKRFLFLY_ 0 0 0 REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF REV__ENST00000342992.10_3_2:179536946-179538410:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 752.9495239257812 2 752.948613 1503.88267 NaN NaN NaN NaN NaN NaN NaN 97.896 1 97.653 97.153 98.153 -0.24277 0 0 0 0.94337 1 53467 53467 0.35063 0.35063 1 + 45750 25730 30511 31252 53708 53708 0.15088679430141383 PHRLFHHC 8 Unmodified _PHRLFHHC_ 0 0 0 REV__ENST00000478467.5_1_1:45478567-45479375:+|nuORF REV__ENST00000478467.5_1_1:45478567-45479375:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7589721679688 2 523.758695 1045.50284 NaN NaN NaN NaN NaN NaN NaN 12.685 1 12.685 12.185 13.185 0 0 0 0 0.97444 1 6004 6004 0 0 1 + 45751 27347 30512 31253 53709 53709 -0.018093777262720323 PHRLYLQM 8 Unmodified _PHRLYLQM_ 0 0 0 nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1 nc|ENSG00000095713|Q9NQ79-3|CRTAC1 nc|ENSG00000095713|Q9NQ79-3|CRTAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1920471191406 3 353.1919 1056.55387 -0.58875 -0.00020794 1.0238 0.0003616 0.43505 0.00015366 353.1922475263203 15.825 0.24859 15.811 15.735 15.984 -0.014067 164 85 2 0 0 0 0.80676 1 7754 7754 1.6526 0.45928 1 1085500 45752 1660 30513 31254 53710 53710 0.02785526527895854 PHRPPRER 8 Unmodified _PHRPPRER_ 0 0 0 REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF REV__ENST00000551556.1_1_12:93965712-93966120:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1045.075073242188 1 1044.58097 1043.57369 0.51958 0.00054274 -2.3628 -0.0024682 -1.8432 -0.0019254 1044.5779365269777 28.46 0.21473 28.489 28.354 28.569 0.029564 11 8 2 0 0 0 8.7369 1 14770 14770 2.3027 0 1 2027400 + 45753 28716 30514 31255 53711 53711 0.053650385828859726 PHRQRGFR 8 Unmodified _PHRQRGFR_ 0 0 0 ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1053.085571289062 1 1053.58131 1052.57403 -0.36877 -0.00038853 0.14433 0.00015206 -0.22444 -0.00023647 1054.5813640823244 32.804 0.35989 32.645 32.5 32.86 -0.15919 20 14 2 0 0 0 8.7369 1 17210 17210 0.79363 0 1 1586000 45754 12192 30515 31256 53712 53712 0.04984458302760686 PHRQRGFR 8 Unmodified _PHRQRGFR_ 0 0 0 ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF ENST00000361762.3_2_4:30722797-30723229:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1054.584350585938 1 1053.58131 1052.57403 0.20648 0.00021754 1.3933 0.0014679 1.5998 0.0016855 1054.5837278404815 31.04 0.13696 31.07 31.015 31.152 0.030106 8 5 2 0 0 0 0.80624 1 16271 16271 2.8892 0 1 1350200 45755 12192 30515 31256 53713 53713 0.04984458302760686 PHRRKQHS 8 Unmodified _PHRRKQHS_ 0 0 0 REV__nc|ENSG00000011021|P51797-5|CLCN6 REV__nc|ENSG00000011021|P51797-5|CLCN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1045.573974609375 1 1045.57622 1044.56894 -0.31636 -0.00033078 -1.8104 -0.0018929 -2.1268 -0.0022237 1046.5755917672213 32.5 0.19946 32.371 32.33 32.53 -0.12915 13 8 2 0 0 0 0.80624 1 16934 16934 2.8892 0 1 4604700 + 45756 29483 30516 31257 53714 53714 0.04844154440138482 PHRRLDVP 8 Unmodified _PHRRLDVP_ 0 0 0 REV__ENST00000301765.9_1_11:60899050-60899611:-|nuORF REV__ENST00000301765.9_1_11:60899050-60899611:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 990.06640625 1 989.563924 988.556647 0.34219 0.00033862 -0.64518 -0.00063845 -0.30299 -0.00029983 989.5636114278482 33.451 0.60688 33.48 32.936 33.543 0.028934 35 26 2 0 0 0 8.7369 1 17588 17588 2.8892 0 1 2153000 + 45757 25324 30517 31258 53715 53715 0.061911179770731906 PHRSRRPL 8 Unmodified _PHRSRRPL_ 0 0 0 REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8044738769531 2 509.804491 1017.59443 0.22002 0.00011217 -0.74902 -0.00038186 -0.529 -0.00026969 509.8041223704475 89.124 0.40369 88.619 88.416 88.819 -0.50423 47 17 4 0 0 0 0.80044 1 48751 48751 6.3541 0.59368 1 3445300 + 45758 29232 30518 31259 53716 53716 0.08633628962559214 PHRSRRPL 8 Unmodified _PHRSRRPL_ 0 0 0 REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF REV__ENST00000598675.1_1_19:7997268-7998765:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.804491 1017.59443 0.22002 0.00011217 -0.74902 -0.00038186 -0.529 -0.00026969 509.8041223704475 89.124 0.40369 88.619 88.416 88.819 -0.50423 0 0 NaN 6.3541 47 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3445300 + 45759 29232 30518 31259 0.08633628962559214 PHRVTPRS 8 Unmodified _PHRVTPRS_ 0 0 0 ENST00000500118.2_1_8:6263499-6263865:-|nuORF ENST00000500118.2_1_8:6263499-6263865:-|nuORF ENST00000500118.2_1_8:6263499-6263865:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 949.5333862304688 1 949.532624 948.525347 0.48832 0.00046367 0.695 0.00065993 1.1833 0.0011236 949.5345992794422 24.275 0.21743 24.296 24.241 24.459 0.021185 10 8 2 0 0 0 0.80624 1 12530 12530 2.8892 0 1 4452800 45760 14438 30519 31260 53717 53717 0.04902544943001885 PHRYADRF 8 Unmodified _PHRYADRF_ 0 0 0 REV__nc|ENSG00000129993|O75081-2|CBFA2T3 REV__nc|ENSG00000129993|O75081-2|CBFA2T3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.26416015625 2 531.267407 1060.52026 NaN NaN NaN NaN NaN NaN NaN 52.165 1 51.731 51.231 52.231 -0.43367 0 0 0 0.95201 1 28165 28165 10.183 0.83596 1 + 45761 19690 30520 31261 53718 53718 -0.007577589196444023 PHRYCWVWR 9 Unmodified _PHRYCWVWR_ 0 0 0 ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822631835938 3 434.881948 1301.62402 NaN NaN NaN NaN NaN NaN NaN 37.575 1 37.303 36.803 37.803 -0.27133 0 0 0 0.84369 1 19746 19746 1.1933 0 1 45762 13972 30521 31262 53719 53719 -0.014731750836517676 PHRYCWVWR 9 Unmodified _PHRYCWVWR_ 0 0 0 ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF ENST00000475983.1_1_19:40877588-40880546:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.8828735351562 3 434.881948 1301.62402 NaN NaN NaN NaN NaN NaN NaN 15.248 1 12.72 12.22 13.22 -2.5273 0 0 0 0.85737 1 7806 7806 0.26902 0 1 45763 13972 30521 31262 53720 53720 -0.014731750836517676 PHSASRGP 8 Unmodified _PHSASRGP_ 0 0 0 ENST00000320256.5_1_2:70188593-70188707:-|nuORF ENST00000320256.5_1_2:70188593-70188707:-|nuORF ENST00000320256.5_1_2:70188593-70188707:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.7079467773438 2 404.706651 807.39875 NaN NaN NaN NaN NaN NaN NaN 35.541 1 31.348 30.848 31.848 -4.1928 0 0 0 0.97444 1 20631 20631 2.3027 0 1 45764 11762 30522 31263 53721 53721 -0.012653812821440624 PHSASRGP 8 Unmodified _PHSASRGP_ 0 0 0 ENST00000320256.5_1_2:70188593-70188707:-|nuORF ENST00000320256.5_1_2:70188593-70188707:-|nuORF ENST00000320256.5_1_2:70188593-70188707:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.7083740234375 2 404.706651 807.39875 NaN NaN NaN NaN NaN NaN NaN 35.897 1 31.705 31.205 32.205 -4.1928 0 0 0 0.97444 1 20896 20896 2.3027 0 1 45765 11762 30522 31263 53722 53722 -0.012653812821440624 PHSHPLVQQYF 11 Unmodified _PHSHPLVQQYF_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 676.8402709960938 2 676.840936 1351.66732 NaN NaN NaN NaN NaN NaN NaN 50.816 1 50.816 50.316 51.316 0 0 0 0 0.94144 1 28031 28031 1.4819 0 1 + 45766 19026 30523 31264 53723 53723 0.005552931746478862 PHSKIQALL 9 Unmodified _PHSKIQALL_ 0 0 0 REV__nc|ENSG00000108773|Q92830-2|KAT2A REV__nc|ENSG00000108773|Q92830-2|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8062744140625 2 503.805834 1005.59712 0.87633 0.0004415 -0.11311 -5.6985E-05 0.76322 0.00038451 504.307087252843 66.042 0.20666 59.866 59.758 59.965 -6.1757 17 11 2 0 0 0 0.013323 1 42925 42925 71.134 22.788 1 15537000 + 45767 18625 30524 31265 53724 53724 0.09454039576849027 PHSKLVTQKS 10 Unmodified _PHSKLVTQKS_ 0 0 0 REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.254638671875 2 562.824755 1123.63496 0.71798 0.0004041 3.5555 0.0020011 4.2735 0.0024052 563.3282166454618 49.265 0.082413 48.893 48.84 48.923 -0.37172 5 3 2 0 0 0 0.22327 1 26448 26448 19.257 9.1831 1 767910 + 45768 19226 30525 31266 53725 53725 0.07808505771663476 PHSLLAPGAL 10 Unmodified _PHSLLAPGAL_ 0 0 0 ENST00000402802.7_1_7:558720-558831:-|nuORF ENST00000402802.7_1_7:558720-558831:-|nuORF ENST00000402802.7_1_7:558720-558831:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2853393554688 2 488.284734 974.554916 0.12757 6.2289E-05 1.1753 0.00057387 1.3029 0.00063616 488.2852165028051 54.047 0.35635 53.98 53.806 54.162 -0.066936 38 17 3 0 0 0 0.50944 1 29415 29415 15.847 0 1 4661700 45769 12898 30526 31267 53726 53726 0.06662064168460802 PHSLLKEMVL 10 Unmodified _PHSLLKEMVL_ 0 0 0 REV__ENST00000548432.5_1_12:82832322-82872800:+|nuORF REV__ENST00000548432.5_1_12:82832322-82872800:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.55908203125 3 389.558248 1165.65292 1.5023 0.00058524 3.0741 0.0011975 4.5764 0.0017828 389.89476453498764 89.454 0.44791 83.279 83.022 83.47 -6.1757 37 24 2 0 0 0 0.5802 1 59076 59076 12.175 0 1 15257000 + 45770 28685 30527 31268 53727 53727 0.0767150470217075 PHSPLELL 8 Unmodified _PHSPLELL_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.2588500976562 2 453.258185 904.501818 1.4483 0.00065647 -0.61303 -0.00027786 0.8353 0.00037861 453.258153822394 49.828 0.18198 49.779 49.683 49.865 -0.048824 12 8 2 0 0 0 0.67481 1 26954 26954 19.439 0 1 901150 + 45771 18143 30528 31269 53728 53728 0.04574686385797122 PHSPNAVL 8 Unmodified _PHSPNAVL_ 0 0 0 REV__OGDH|p.L377P|1|0.15|ENSG00000105953|chr7:44676073-44676073|T/C|missense_variant REV__OGDH|p.L377P|1|0.15|ENSG00000105953|chr7:44676073-44676073|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8634643554688 2 417.727052 833.439552 NaN NaN NaN NaN NaN NaN NaN 29.049 1 29.049 28.549 29.549 0 0 0 0 0.97444 1 15032 15032 2.8892 0 1 + 45772 30064 30529 31270 53729 53729 0.016169600374723814 PHSPNGPL 8 Unmodified _PHSPNGPL_ 0 0 0 ENST00000504941.1_1_5:106762801-107006392:-|nuORF;ENSG00000184349|ENST00000333274|EFNA5 ENST00000504941.1_1_5:106762801-107006392:-|nuORF ENST00000504941.1_1_5:106762801-107006392:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.7109375 2 409.711402 817.408252 NaN NaN NaN NaN NaN NaN NaN 44.198 1 44.198 43.698 44.698 0 0 0 0 0.97444 1 24040 24040 2.8892 0 1 45773 9248 30530 31271 53730 53730 -0.0077561299663102545 PHSPPKPP 8 Unmodified _PHSPPKPP_ 0 0 0 ENSG00000179627|ENST00000342537|ZBTB42 ENSG00000179627|ENST00000342537|ZBTB42 ENSG00000179627|ENST00000342537|ZBTB42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7371826171875 2 428.73742 855.460287 0.6462 0.00027705 0.07678 3.2919E-05 0.72298 0.00030997 428.73757245983995 46.295 0.44942 41.285 41.025 41.474 -5.0098 60 31 3 0 0 0 0.76266 1 28430 28430 11.64 0.81637 1 37913000 45774 8849 30531 31272 53731 53731 0.026775504171382636 PHSQKRLLLR 10 Unmodified _PHSQKRLLLR_ 0 0 0 REV__ENST00000320316.7_1_17:7139851-7140732:-|nuORF REV__ENST00000320316.7_1_17:7139851-7140732:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 624.388671875 2 624.388388 1246.76222 NaN NaN NaN NaN NaN NaN NaN 106.62 1 100.44 99.941 100.94 -6.1757 0 0 0 1.0024 1 71358 71358 0.40072 0 1 + 45775 25499 30532 31273 53732 53732 0.14871271436504685 PHSQMPTAGMG 11 Unmodified _PHSQMPTAGMG_ 0 0 0 ENST00000475057.5_2_6:44797563-44921081:-|nuORF ENST00000475057.5_2_6:44797563-44921081:-|nuORF ENST00000475057.5_2_6:44797563-44921081:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.1780700683594 3 371.832043 1112.4743 0.73204 0.0002722 -0.48669 -0.00018097 0.24535 9.1228E-05 371.83221665512076 16.199 0.20564 13.642 13.53 13.735 -2.557 53 34 2 0 0 0 0.30139 1 8419 8419 2.6312 0.72486 1 2147000 45776 13950 30533 31274 53733 53733 -0.07743908208408357 PHSSSAKL 8 Unmodified _PHSSSAKL_ 0 0 0 ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5 ENST00000529480.1_1_11:57457792-57467500:+|nuORF ENST00000529480.1_1_11:57457792-57467500:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7259826660156 2 413.72451 825.434466 0.92509 0.00038273 1.1465 0.00047435 2.0716 0.00085708 413.72477667333055 18.448 0.25561 15.827 15.69 15.946 -2.6215 40 25 2 0 0 0 0.26159 1 9696 9696 60.39 9.5345 1 4117400 45777 6469 30534 31275 53734 53734 0.014766561748501772 PHSTPLPSF 9 Unmodified _PHSTPLPSF_ 0 0 0 ENST00000436179.1_3_7:39663639-39663861:+|nuORF ENST00000436179.1_3_7:39663639-39663861:+|nuORF ENST00000436179.1_3_7:39663639-39663861:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7532653808594 2 491.753267 981.491981 NaN NaN NaN NaN NaN NaN NaN 40.627 1 40.324 39.824 40.824 -0.30304 0 0 0 0.15618 1 21483 21483 36.044 7.5574 1 45778 13331 30535 31276 53735 53735 0.0004949838044012722 PHSTPLWL 8 Unmodified _PHSTPLWL_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7579040527344 2 475.758352 949.502152 0.66444 0.00031612 -0.9709 -0.00046191 -0.30645 -0.0001458 475.7573321337139 64.582 0.34532 64.097 63.949 64.294 -0.48512 24 15 2 0 0 0 0.65867 1 35276 35276 20.871 6.2895 1 860750 45779 1923 30536 31277 53736 53736 0.02538106105669158 PHSVFTSR 8 Unmodified _PHSVFTSR_ 0 0 0 ENST00000501008.2_1_12:92539970-92540141:+|nuORF ENST00000501008.2_1_12:92539970-92540141:+|nuORF ENST00000501008.2_1_12:92539970-92540141:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.4854125976562 1 930.479191 929.471915 3.0795 0.0028654 1.3271 0.0012348 4.4065 0.0041002 930.4804135489661 97.11 0.67747 97.103 96.826 97.503 -0.007019 62 25 3 0 0 0 0.80975 1 53809 53809 0.79363 0 1 23123000 45780 14442 30537 31278 53737 53737 0.004357474404855566 PHSVLLQII 9 Unmodified _PHSVLLQII_ 0 0 0 REV__ENSG00000185722|ENST00000341657|ANKFY1 REV__ENSG00000185722|ENST00000341657|ANKFY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8187255859375 2 510.316035 1018.61752 0.52524 0.00026804 -0.61956 -0.00031617 -0.094317 -4.8131E-05 510.3157282353102 74.811 0.45148 74.857 74.616 75.068 0.045959 58 20 4 0 0 0 0.19891 1 41363 41363 11.64 2.2929 1 26291000 + 45781 23521 30538 31279 53738 53738 0.1089521023668567 PHSWSAPSF 9 Unmodified _PHSWSAPSF_ 0 0 0 ENST00000389167.9_1_17:7218301-7218424:-|nuORF ENST00000389167.9_1_17:7218301-7218424:-|nuORF ENST00000389167.9_1_17:7218301-7218424:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.2361450195312 2 508.235242 1014.45593 NaN NaN NaN NaN NaN NaN NaN 46.485 1 41.404 40.904 41.904 -5.0805 0 0 0 0.10545 1 28722 28722 42.095 3.9434 1 45782 12642 30539 31280 53739 53739 -0.05071958796429499 PHTAFAVP 8 Unmodified _PHTAFAVP_ 0 0 0 ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.4412231445312 1 839.441015 838.433738 0.19617 0.00016468 0.47957 0.00040257 0.67575 0.00056725 839.4413564798107 49.454 0.31596 49.062 48.922 49.238 -0.3923 34 15 3 0 0 0 0.50586 1 26651 26651 34.187 0 1 9584800 45783 15633 30540 31281 53740 53740 0.00805861525805085 PHTAFAVP 8 Unmodified _PHTAFAVP_ 0 0 0 ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF ENST00000587016.5_1_19:4501842-4502019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 839.4420166015625 1 839.441015 838.433738 0.58166 0.00048827 0.17266 0.00014494 0.75432 0.00063321 839.4412004472744 49.11 0.21169 49.066 48.964 49.175 -0.04369 15 9 2 0 0 0 0.61462 1 26523 26523 24.674 3.8027 1 898800 45784 15633 30540 31281 53741 53741 0.00805861525805085 PHTAPPGH 8 Unmodified _PHTAPPGH_ 0 0 0 REV__ENSG00000277258|ENST00000620225|PCGF2 REV__ENSG00000277258|ENST00000620225|PCGF2 MSMS AL20221201_MKP_PDAC_01 4 407.5315551757812 2 407.203744 812.392936 NaN NaN NaN NaN NaN NaN NaN 87.662 1 81.486 80.986 81.986 -6.1757 0 0 0 0.95201 1 57812 57812 10.183 4.423 1 + 45785 24662 30541 31282 53742 53742 -0.02076479793811359 PHTGDSEGEEE 11 Unmodified _PHTGDSEGEEE_ 0 0 0 REV__nc|ENSG00000150867|P48426-2|PIP4K2A REV__nc|ENSG00000150867|P48426-2|PIP4K2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.728515625 2 593.728372 1185.44219 NaN NaN NaN NaN NaN NaN NaN 104.1 1 104.05 103.55 104.55 -0.048737 0 0 0 0.9435 1 57799 57799 0 0 1 + 45786 21040 30542 31283 53743 53743 -0.14311325876815317 PHTIDEMPE 9 Unmodified _PHTIDEMPE_ 0 0 0 nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF nc|ENSG00000143321|P51858-3|HDGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8272399902344 3 356.827063 1067.45936 -0.52841 -0.00018855 1.5892 0.00056707 1.0608 0.00037852 356.82749562226815 48.535 0.28053 48.535 48.394 48.675 0 26 13 3 0 0 0 0.49272 1 26631 26631 4.897 0 1 4361100 45787 16241 30543 31284 53744 53744 -0.07167076804739736 PHTLPLHA 8 Unmodified _PHTLPLHA_ 0 0 0 REV__ENST00000374837.7_1_20:33147851-33148046:+|nuORF REV__ENST00000374837.7_1_20:33147851-33148046:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2513427734375 2 443.250695 884.486836 0.28023 0.00012421 0.27764 0.00012306 0.55787 0.00024728 443.25065764358254 35.292 0.18626 35.319 35.211 35.397 0.027401 12 8 2 0 0 0 0.57408 1 18643 18643 28.173 1.832 1 2989300 + 45788 26191 30544 31285 53745 53745 0.03997239308478129 PHTNSGAF 8 Unmodified _PHTNSGAF_ 0 0 0 nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 415.587646484375 2 415.69321 829.371866 1.5933 0.00066233 -2.1825 -0.00090727 -0.58924 -0.00024494 415.69278001049975 33.787 0.44754 29.802 29.555 30.002 -3.9853 56 24 3 0 0 0 8.7369 1 19516 19516 0.79363 0 1 15476000 45789 6784 30545 31286 53746 53746 -0.04964489893325208 PHTQAPTY 8 Unmodified _PHTQAPTY_ 0 0 0 REV__nc|ENSG00000167281|A6NFN3|RBFOX3 REV__nc|ENSG00000167281|A6NFN3|RBFOX3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.6973876953125 2 457.721967 913.429381 0.84873 0.00038848 1.7295 0.00079163 2.5782 0.0011801 457.72325647604464 42.968 0.30542 38.283 38.125 38.431 -4.6846 23 19 2 0 0 0 8.7369 1 26046 26046 11.64 0 1 7496400 + 45790 22199 30546 31287 53747 53747 -0.03079647687764009 PHTRVKTPAPT 11 Unmodified _PHTRVKTPAPT_ 0 0 0 REV__ENST00000472605.1_1_9:35810342-35810636:-|nuORF REV__ENST00000472605.1_1_9:35810342-35810636:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2318115234375 3 402.231412 1203.67241 NaN NaN NaN NaN NaN NaN NaN 34.402 1 34.211 33.711 34.711 -0.19131 0 0 0 0.93893 1 17968 17968 1.3296 0.63198 1 + 45791 27521 30547 31288 53748 53748 0.07871597037274114 PHTTEMTSECQ 11 Unmodified _PHTTEMTSECQ_ 0 0 0 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 ENSG00000164309|ENST00000446378|CMYA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.837158203125 3 421.837522 1262.49074 NaN NaN NaN NaN NaN NaN NaN 0.098162 1 0.024243 -0.47576 0.52424 -0.07392 0 0 0 0.9435 1 51 51 0 0 1 45792 7178 30548 31289 53749 53749 -0.13000871832900884 PHTTRSRR 8 Unmodified _PHTTRSRR_ 0 0 0 nc|ENSG00000072415|Q8N3R9-2|PALS1;ENSG00000072415|ENST00000261681|PALS1 nc|ENSG00000072415|Q8N3R9-2|PALS1 nc|ENSG00000072415|Q8N3R9-2|PALS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1010.231567382812 1 1010.56024 1009.55296 -0.095526 -9.6534E-05 -1.0697 -0.001081 -1.1652 -0.0011775 1011.5606620287111 23.522 0.12745 23.534 23.5 23.628 0.012396 7 5 2 0 0 0 8.7369 1 12044 12044 0.79363 0 1 12142000 45793 1082 30549 31290 53750 53750 0.048564482032247724 PHTVTVSMD 9 Unmodified _PHTVTVSMD_ 0 0 0 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 ENSG00000112983|ENST00000254900|BRD8;nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7351379394531 2 493.734217 985.453881 1.6457 0.00081252 0.28626 0.00014134 1.9319 0.00095386 493.73428188956944 41.742 0.4707 37.134 36.923 37.394 -4.6079 80 29 4 0 0 0 0.042911 1 25174 25174 48.346 14.243 1 75431000 45794 2934;16128 30550 31291 53751 53751 -0.039427555965289685 PHTYRRLP 8 Unmodified _PHTYRRLP_ 0 0 0 REV__ENST00000447070.1_1_2:27579320-27579698:+|nuORF REV__ENST00000447070.1_1_2:27579320-27579698:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1040.416870117188 1 1039.57957 1038.5723 0.039526 4.109E-05 -1.2596 -0.0013094 -1.22 -0.0012683 1040.5821575993136 24.688 0.21173 24.687 24.639 24.851 -0.0016766 9 8 2 0 0 0 0.80624 1 12698 12698 2.8892 0 1 4390200 + 45795 27154 30551 31292 53752 53752 0.054554044941369284 PHTYRRLP 8 Unmodified _PHTYRRLP_ 0 0 0 REV__ENST00000447070.1_1_2:27579320-27579698:+|nuORF REV__ENST00000447070.1_1_2:27579320-27579698:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1039.408569335938 1 1039.57957 1038.5723 -0.55369 -0.0005756 -0.70536 -0.00073328 -1.259 -0.0013089 1039.5807873318458 36.548 0.082996 36.298 36.253 36.336 -0.2497 5 3 2 0 0 0 8.7369 1 19157 19157 0.79363 0 1 2183500 + 45796 27154 30551 31292 53753 53753 0.054554044941369284 PHTYTYMAV 9 Unmodified _PHTYTYMAV_ 0 0 0 REV__ENST00000372390.8_1_X:106957032-106957083:-|nuORF REV__ENST00000372390.8_1_X:106957032-106957083:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7532348632812 2 541.75241 1081.49027 0.93504 0.00050656 0.1114 6.0351E-05 1.0464 0.00056691 541.7525345826818 21.781 0.56641 19.046 18.827 19.394 -2.7348 64 31 3 0 0 0 0.2143 1 11617 11617 21.747 1.3321 1 3752700 + 45797 26108 30552 31293 53754 53754 -0.047218786998428186 PHVGPAPPPL 10 Unmodified _PHVGPAPPPL_ 0 0 0 REV__ENSG00000104897|ENST00000221494|SF3A2 REV__ENSG00000104897|ENST00000221494|SF3A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2805786132812 2 491.279452 980.544351 NaN NaN NaN NaN NaN NaN NaN 43.082 1 42.771 42.271 43.271 -0.31039 0 0 0 0.6668 1 22909 22909 18.135 0 1 + 45798 18386 30553 31294 53755 53755 0.053300815140460145 PHVHTWSL 8 Unmodified _PHVHTWSL_ 0 0 0 REV__ENSG00000177455|ENST00000538922|CD19 REV__ENSG00000177455|ENST00000538922|CD19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2699890136719 2 488.753601 975.49265 0.22347 0.00010922 -0.19808 -9.6812E-05 0.025391 1.241E-05 488.7535086417672 58.66 0.23485 58.66 58.489 58.723 0 15 9 2 0 0 0 8.7369 1 32604 32604 11.114 9.2702 1 1003000 + 45799 22983 30554 31295 53756 53756 0.0039233782013070595 PHVPPAAITT 10 Unmodified _PHVPPAAITT_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1003.387512207031 1 1003.55711 1002.54983 0.32598 0.00032714 0.6653 0.00066767 0.99129 0.00099481 1003.5560816468997 29.679 0.54943 29.71 29.632 30.182 0.030104 37 22 3 0 0 0 0.23862 1 15479 15479 3.9444 1.0552 1 3060700 45800 3233 30555 31296 53757 53757 0.0486576030583592 PHVRHTWK 8 Unmodified _PHVRHTWK_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-4|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1060.908935546875 1 1060.57991 1059.57263 -0.0015556 -1.6499E-06 1.02 0.0010818 1.0185 0.0010802 1061.5804816804623 31.654 0.14625 31.525 31.454 31.601 -0.12915 9 5 2 0 0 0 8.7369 1 16437 16437 0.79363 0 1 1906900 45801 10555 30556 31297 53758 53758 0.045228242139728536 PHVSLVKRLF 10 Unmodified _PHVSLVKRLF_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2503662109375 3 399.248514 1194.72371 NaN NaN NaN NaN NaN NaN NaN 35.604 1 35.629 35.129 36.129 0.024967 0 0 0 0.99897 1 18830 18830 0.77653 0.50751 1 + 45802 17510 30557 31298 53759 53759 0.13413965801987615 PHVTMKQLRT 10 Unmodified _PHVTMKQLRT_ 0 0 0 REV__ENST00000296509.10_1_4:120982079-120983154:-|nuORF REV__ENST00000296509.10_1_4:120982079-120983154:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.228759765625 3 404.229014 1209.66521 NaN NaN NaN NaN NaN NaN NaN 20.598 1 17.905 17.405 18.405 -2.693 0 0 0 0.94046 1 10978 10978 6.1918 3.1196 1 + 45803 25272 30558 31299 53760 53760 0.0687654116518388 PHVTVMFW 8 Unmodified _PHVTVMFW_ 0 0 0 REV__ENSG00000170965|ENST00000359237|PLAC1 REV__ENSG00000170965|ENST00000359237|PLAC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7729187011719 2 508.754756 1015.49496 0.30552 0.00015544 1.248 0.00063493 1.5535 0.00079037 508.7554967671175 40.002 0.1769 40.002 39.912 40.089 0 16 8 3 0 0 0 8.7369 1 21454 21454 20.871 8.3397 1 2082900 + 45804 22527 30559 31300 53761 53761 -0.012169497664217488 PHVWHGYPF 9 Unmodified _PHVWHGYPF_ 0 0 0 ENST00000237841.5_1_12:3950645-3951302:+|nuORF ENST00000237841.5_1_12:3950645-3951302:+|nuORF ENST00000237841.5_1_12:3950645-3951302:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2744140625 2 570.274701 1138.53485 NaN NaN NaN NaN NaN NaN NaN 86.277 1 85.774 85.274 86.274 -0.50318 0 0 0 0.84369 1 47208 47208 2.3027 0 1 45805 11093 30560 31301 53762 53762 -0.02887686771487097 PHWGFALH 8 Unmodified _PHWGFALH_ 0 0 0 ENST00000481971.5_1_20:33501265-33501584:+|nuORF ENST00000481971.5_1_20:33501265-33501584:+|nuORF ENST00000481971.5_1_20:33501265-33501584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.742919921875 2 482.743037 963.471521 NaN NaN NaN NaN NaN NaN NaN 6.0693 1 5.9919 5.4919 6.4919 -0.07749 0 0 0 0.97444 1 2996 2996 0 0 1 45806 14093 30561 31302 53763 53763 -0.011676274887463478 PHWVWERRM 9 Unmodified _PHWVWERRM_ 0 0 0 ENST00000449742.6_1_6:30126994-30128439:-|nuORF ENST00000449742.6_1_6:30126994-30128439:-|nuORF ENST00000449742.6_1_6:30126994-30128439:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8847351074219 3 432.88547 1295.63458 NaN NaN NaN NaN NaN NaN NaN 16.689 1 14.132 13.632 14.632 -2.557 0 0 0 0.84211 1 8663 8663 2.4985 0.41248 1 45807 13505 30562 31303 53764 53764 -0.0014119242921424302 PHYLRWRY 8 Unmodified _PHYLRWRY_ 0 0 0 REV__ENST00000294728.6_1_1:101200157-101200265:+|nuORF REV__ENST00000294728.6_1_1:101200157-101200265:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.8791198730469 3 397.545442 1189.6145 NaN NaN NaN NaN NaN NaN NaN 2.5031 1 0.021169 -0.47883 0.52117 -2.482 0 0 0 0.97444 1 1278 1278 0.45834 0.18932 1 + 45808 25255 30563 31304 53765 53765 0.02727379902512439 PHYQKLNKF 9 Unmodified _PHYQKLNKF_ 0 0 0 ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF ENST00000487828.1_1_3:180864080-180864248:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8214111328125 2 587.822015 1173.62948 0.32727 0.00019238 -0.75917 -0.00044626 -0.4319 -0.00025388 587.821561075532 95.342 0.27351 94.974 94.839 95.112 -0.36814 22 12 2 0 0 0 0.58145 2 52041 52041;52139 4.3292 1.0479 1 496600 45809 14211 30564 31305 53766;53767 53766 0.04960826979822741 PHYRPTSFI 9 Unmodified _PHYRPTSFI_ 0 0 0 REV__ENSG00000113460|ENST00000336767|BRIX1 REV__ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.1983032226562 3 373.197819 1116.57163 0.069981 2.6117E-05 1.4182 0.00052927 1.4882 0.00055538 373.1980027004028 19.658 0.37409 19.665 19.466 19.84 0.0078506 54 20 4 0 0 0 0.53666 1 10051 10051 2.9952 0 1 3485000 + 45810 18869 30565 31306 53768 53768 0.018005650544182572 PHYVPGYAGFF 11 Unmodified _PHYVPGYAGFF_ 0 0 0 nc|ENSG00000188163|Q6J272-2|CIMIP2A;ENSG00000188163|ENST00000344774|FAM166A nc|ENSG00000188163|Q6J272-2|CIMIP2A nc|ENSG00000188163|Q6J272-2|CIMIP2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7987060546875 2 627.800749 1253.58694 NaN NaN NaN NaN NaN NaN NaN 86.071 1 85.568 85.068 86.068 -0.50318 0 0 0 0.91154 1 47100 47100 6.7232 0.99131 1 45811 9634 30566 31307 53769 53769 -0.029705681483847002 PIAESWLHY 9 Unmodified _PIAESWLHY_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.7776489257812 2 558.279649 1114.54475 1.2734 0.00071093 -0.090337 -5.0433E-05 1.1831 0.0006605 558.7811205604019 98.468 0.29465 92.293 92.12 92.414 -6.1757 34 20 2 0 0 0 0.203 1 65410 65410 5.2307 0 1 30699000 + 45812 19319 30567 31308 53770 53770 -0.007945435567535242 PIAGDYILF 9 Unmodified _PIAGDYILF_ 0 0 0 ENSG00000071073|ENST00000393487|MGAT4A;nc|ENSG00000071073|Q9UM21-2|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A ENSG00000071073|ENST00000393487|MGAT4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7738952636719 2 504.773668 1007.53278 -0.064328 -3.2471E-05 0.24894 0.00012566 0.18461 9.3187E-05 504.7736876898851 96.126 0.38947 95.821 95.639 96.028 -0.30473 49 20 3 0 0 0 0.46577 1 52465 52465 9.3474 0 1 1018500 45813 1050 30568 31309 53771 53771 0.02931839700056571 PIAHTPPPPPA 11 Unmodified _PIAHTPPPPPA_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7709350585938 2 547.803291 1093.59203 0.88599 0.00048535 -3.4952 -0.0019147 -2.6092 -0.0014293 547.8022068702172 69.141 0.57625 62.966 62.705 63.281 -6.1757 48 31 2 0 0 0 0.28528 1 45075 45075 14.838 3.198 1 54235000 45814 10865 30569 31310 53772 53772 0.04897735714234841 PIAIRERF 8 Unmodified _PIAIRERF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2976989746094 2 501.298176 1000.5818 0.32667 0.00016376 -0.32821 -0.00016453 -0.0015409 -7.7246E-07 501.29791165413167 48.453 0.25479 48.41 48.3 48.555 -0.04369 23 12 3 0 0 0 0.34916 1 26141 26141 49.933 0 1 3564300 45815 748 30570 31311 53773 53773 0.08153172779657325 PIAQDELAL 9 Unmodified _PIAQDELAL_ 0 0 0 ENST00000525598.1_1_11:118984446-118985209:+|nuORF;ENSG00000172375|ENST00000648610|C2CD2L;nc|ENSG00000172375|O14523-2|C2CD2L ENST00000525598.1_1_11:118984446-118985209:+|nuORF ENST00000525598.1_1_11:118984446-118985209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2658386230469 2 485.266207 968.517862 0.46906 0.00022762 -0.41162 -0.00019975 0.057434 2.7871E-05 485.2659908528649 66.746 0.36636 66.746 66.512 66.878 0 42 16 3 0 0 0 0.16226 1 37147 37147 26.884 2.8631 1 6689300 45816 8209 30571 31312 53774 53774 0.03234347832028561 PIARELHQF 9 Unmodified _PIARELHQF_ 0 0 0 nc|ENSG00000169083|P10275-2|AR;ENSG00000169083|ENST00000374690|AR nc|ENSG00000169083|P10275-2|AR nc|ENSG00000169083|P10275-2|AR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3270874023438 2 555.806365 1109.59818 0.84916 0.00047197 2.4908 0.0013844 3.34 0.0018564 555.8080117139702 68.801 0.089836 68.826 68.77 68.86 0.025146 5 3 2 0 0 0 0.20528 1 37802 37802 8.5933 3.3626 1 502830 45817 7831 30572 31313 53775 53775 0.047762539457608 PIATAWAA 8 Unmodified _PIATAWAA_ 0 0 0 REV__ENSG00000156232|ENST00000286760|WHAMM REV__ENSG00000156232|ENST00000286760|WHAMM MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.718994140625 2 400.718696 799.422839 0.99822 0.0004 -0.94885 -0.00038022 0.04937 1.9783E-05 400.7185328588222 48.681 0.30215 43.285 43.069 43.371 -5.3961 25 17 2 0 0 0 0.77907 1 30329 30329 10.183 3.8293 1 17483000 + 45818 21321 30573 31314 53776 53776 0.015104591515068932 PIAYDGEVL 9 Unmodified _PIAYDGEVL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.7913818359375 2 488.752933 975.491313 0.6074 0.00029687 1.9945 0.0009748 2.6019 0.0012717 488.7536277024111 99.6 0.20013 93.424 93.29 93.49 -6.1757 26 12 3 0 0 0 0.12572 1 66404 66404 32.117 1.8922 1 23210000 45819 315 30574 31315 53777 53777 0.002586589407201245 PICNKHLHVL 10 Unmodified _PICNKHLHVL_ 0 0 0 REV__ENSG00000143224|ENST00000367999|PPOX REV__ENSG00000143224|ENST00000367999|PPOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8911743164062 3 391.890221 1172.64883 1.3215 0.00051788 -1.9338 -0.00075783 -0.61229 -0.00023995 391.88945583871254 88.571 0.51945 82.395 82.149 82.669 -6.1757 64 28 3 0 0 0 0.64183 1 58618 58618 8.9762 3.6794 1 58381000 + 45820 20615 30575 31316 53778 53778 0.06941459999097788 PICRDHVQAF 10 Unmodified _PICRDHVQAF_ 0 0 0 ENST00000357635.9_1_15:75192875-75193112:-|nuORF ENST00000357635.9_1_15:75192875-75193112:-|nuORF ENST00000357635.9_1_15:75192875-75193112:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7945556640625 2 593.295307 1184.57606 0.55229 0.00032767 -2.0031 -0.0011885 -1.4508 -0.00086078 593.7950240467754 85.851 0.5493 85.35 85.074 85.623 -0.5015 89 24 5 0 0 0 0.65502 1 47043 47043 7.9102 1.187 1 1793900 45821 12114 30576 31317 53779 53779 -0.008842937943200013 PIDERHRIL 9 Unmodified _PIDERHRIL_ 0 0 0 REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF REV__ENST00000472184.1_1_21:30378740-30380682:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.7855834960938 2 574.830372 1147.64619 1.2034 0.00069173 -1.772 -0.0010186 -0.56868 -0.00032689 574.8290254556404 60.748 0.4399 54.601 54.369 54.809 -6.1478 51 23 3 0 0 0 0.18882 1 39140 39140 15.847 5.0233 1 52792000 + 45822 21323 30577 31318 53780 53780 0.0782732786581164 PIDEWKVLI 9 Unmodified _PIDEWKVLI_ 0 0 0 REV__ENSG00000113594|ENST00000453190|LIFR REV__ENSG00000113594|ENST00000453190|LIFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8223266601562 2 556.82115 1111.62775 0.8508 0.00047374 0.06262 3.4868E-05 0.91342 0.00050861 556.8212346756228 68.631 0.40105 68.656 68.479 68.88 0.025154 56 18 4 0 0 0 0.39863 1 37808 37808 12.532 0 1 32610000 + 45823 18878 30578 31319 53781 53781 0.07639773171240449 PIDFNTQFLFV 11 Unmodified _PIDFNTQFLFV_ 0 0 0 ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENST00000490764.5_1_2:234327938-234366271:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8475952148438 2 670.847896 1339.68124 0.73631 0.00049395 -0.84271 -0.00056533 -0.1064 -7.1379E-05 670.8472587342715 75.367 0.32223 74.89 74.74 75.062 -0.47714 47 18 3 0 0 0 0.67922 1 41323 41323 6.2058 2.6187 1 6551600 45824 14267 30579 31320 53782 53782 0.024985258830838575 PIDGGIGCFY 10 Unmodified _PIDGGIGCFY_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|68 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|68 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2384033203125 2 521.239135 1040.46372 NaN NaN NaN NaN NaN NaN NaN 57.14 1 57.14 56.64 57.64 0 0 0 0 0.83398 1 31793 31793 10.824 1.4765 1 + 45825 16780 30580 31321 53783 53783 -0.05489567591166633 PIDGGVLR 8 Unmodified _PIDGGVLR_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.4793090820312 1 826.478128 825.470852 -0.42985 -0.00035526 -0.025368 -2.0966E-05 -0.45522 -0.00037623 826.4777188921113 70.038 0.29207 69.559 69.424 69.716 -0.47903 25 16 2 0 0 0 0.17994 1 38253 38253 77.984 0 1 3365000 + 45826 29807 30581 31322 53784 53784 0.05113533071562415 PIDGGVLR 8 Unmodified _PIDGGVLR_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4794921875 1 826.478128 825.470852 0.63263 0.00052286 -1.3987 -0.001156 -0.76607 -0.00063314 826.4769993960009 69.378 0.45602 69.409 69.227 69.683 0.030922 47 25 2 0 0 0 0.17994 2 38072 38072;38180 77.984 0 1 20492000 + 45827 29807 30581 31322 53785;53786 53785 0.05113533071562415 PIDGGVLR 8 Unmodified _PIDGGVLR_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 826.478128 825.470852 -0.42985 -0.00035526 -0.025368 -2.0966E-05 -0.45522 -0.00037623 826.4777188921113 70.038 0.29207 69.559 69.424 69.716 -0.47903 0.075244 0.00089498 NaN 77.984 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3365000 + 45828 29807 30581 31322 0.05113533071562415 PIDGGVLR 8 Unmodified _PIDGGVLR_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 826.478128 825.470852 0.63263 0.00052286 -1.3987 -0.001156 -0.76607 -0.00063314 826.4769993960009 69.378 0.45602 69.409 69.227 69.683 0.030922 -0.075244 -0.00024005 NaN 77.984 47 25 2 NaN NaN NaN NaN 0 NaN NaN 0 20492000 + 45829 29807 30581 31322 0.05113533071562415 PIDHFTHIF 9 Unmodified _PIDHFTHIF_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF;MOV10|p.D645N|1|0.1|ENSG00000155363|chr1:112696486-112696486|G/A|missense_variant ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2127685546875 3 376.194186 1125.56073 -0.062208 -2.3402E-05 0.17347 6.5258E-05 0.11126 4.1856E-05 376.1942866413744 55.454 0.23837 55.385 55.238 55.477 -0.068737 23 11 3 0 0 0 0.18118 1 30164 30164 8.1555 0 1 6821400 45830 6383 30582 31323 53787 53787 0.0029716268013544322 PIDLDDRLF 9 Unmodified _PIDLDDRLF_ 0 0 0 REV__ENST00000016171.5_1_10:101474196-101474316:-|nuORF REV__ENST00000016171.5_1_10:101474196-101474316:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3013916015625 2 552.290214 1102.56587 0.4858 0.0002683 3.9807 0.0021985 4.4665 0.0024668 552.2931911223095 100.59 0.099388 94.417 94.389 94.488 -6.1757 9 6 2 0 0 0 0.07916 1 67291 67291 37.974 7.3375 1 20455000 + 45831 24702 30583 31324 53788 53788 0.018694217520987877 PIDLNATEF 9 Unmodified _PIDLNATEF_ 0 0 0 REV__ENSG00000244462|ENST00000374114|RBM12 REV__ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2549133300781 2 510.25584 1018.49713 -0.39817 -0.00020317 -0.38751 -0.00019773 -0.78568 -0.0004009 510.2552050604287 34.113 0.18347 34.113 33.991 34.175 0 13 9 2 0 0 0 0.2001 1 17953 17953 23.148 3.8914 1 4722800 + 45832 24483 30584 31325 53789 53789 -0.0113824254760857 PIDQELYLF 9 Unmodified _PIDQELYLF_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 569.3515625 2 569.294965 1136.57538 1.1413 0.00064973 0.13898 7.9121E-05 1.2803 0.00072886 569.2964008507902 102.33 0.40877 96.159 95.918 96.326 -6.1757 43 30 3 0 0 0 0.203 1 68557 68557 9.3474 0 1 6003900 45833 5994 30585 31326 53790 53790 0.012551900376138292 PIDQWLSFT 9 Unmodified _PIDQWLSFT_ 0 0 0 REV__nc|ENSG00000142632|Q8IW93-2|ARHGEF19 REV__nc|ENSG00000142632|Q8IW93-2|ARHGEF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7815551757812 2 553.779482 1105.54441 0.98596 0.000546 0.53638 0.00029703 1.5223 0.00084304 553.7799412807407 80.166 0.86729 73.99 73.482 74.35 -6.1757 119 51 3 0 0 0 0.25681 1 52369 52369 19.257 6.7254 1 75910000 + 45834 20585 30586 31327 53791 53791 -0.004139632766282375 PIDYDRYF 8 Unmodified _PIDYDRYF_ 0 0 0 REV__ENSG00000188177|ENST00000409871|ZC3H6 REV__ENSG00000188177|ENST00000409871|ZC3H6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.3112182617188 2 544.756007 1087.49746 0.73424 0.00039998 1.2597 0.00068621 1.9939 0.0010862 544.756992197369 73.206 0.43481 67.03 66.809 67.243 -6.1757 51 20 3 0 0 0 8.7369 1 47774 47774 5.7604 0 1 44033000 + 45835 23696 30587 31328 53792 53792 -0.04278822827768636 PIDYHQYNYSL 11 Unmodified _PIDYHQYNYSL_ 0 0 0 REV__ENST00000448238.2_2_5:37006487-37006568:+|nuORF REV__ENST00000448238.2_2_5:37006487-37006568:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 706.8276977539062 2 706.827692 1411.64083 NaN NaN NaN NaN NaN NaN NaN 67.113 1 67.113 66.613 67.613 0 0 0 0 0.94301 1 37428 37428 0.35063 0 1 + 45836 27173 30588 31329 53793 53793 -0.048524405073294474 PIEDDHGNS 9 Unmodified _PIEDDHGNS_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1;nc|ENSG00000171735|Q9Y6Y1-3|CAMTA1;nc|ENSG00000171735|Q9Y6Y1-4|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.205322265625 2 492.206878 982.399203 0.64062 0.00031532 -1.7413 -0.00085709 -1.1007 -0.00054177 492.20603178144904 49.152 0.24673 48.781 48.635 48.882 -0.37171 17 11 2 0 0 0 0.55144 1 26426 26426 4.3292 0 1 1238200 45837 8133 30589 31330 53794 53794 -0.09270051143607816 PIEEAYAIL 9 Unmodified _PIEEAYAIL_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7772521972656 2 509.776408 1017.53826 0.33523 0.00017089 0.82944 0.00042283 1.1647 0.00059372 509.77661424656367 79.81 0.42539 79.81 79.588 80.013 0 40 19 3 0 0 0 0.41742 1 44390 44390 11.64 0 1 1158400 45838 3812 30590 31331 53795 53795 0.030195184918625273 PIEERIHLI 9 Unmodified _PIEERIHLI_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3314819335938 2 560.329673 1118.64479 1.2684 0.00071074 -0.42641 -0.00023893 0.84203 0.00047182 560.3298192286915 61.357 0.37724 55.209 55.055 55.432 -6.1478 26 18 2 0 0 0 0.32871 1 39513 39513 15.847 0.5987 1 25508000 + 45839 18573 30591 31332 53796 53796 0.09021693777049222 PIEKMDASL 9 Unmodified _PIEKMDASL_ 0 0 0 ENSG00000119661|ENST00000553645|DNAL1 ENSG00000119661|ENST00000553645|DNAL1 ENSG00000119661|ENST00000553645|DNAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2564086914062 2 502.260068 1002.50558 1.3154 0.00066068 0.57122 0.0002869 1.8866 0.00094759 502.2600330012743 40.945 0.48315 36.337 36.1 36.583 -4.6079 62 29 3 0 0 0 0.039985 2 24664 24506;24664 49.933 5.526 1 32083000 45840 3450 30592 31333 53797;53798 53798 0.00442988097347552 PIELFFIY 8 Unmodified _PIELFFIY_ 0 0 0 ENST00000397747.4_1_9:5570304-5570463:+|nuORF ENST00000397747.4_1_9:5570304-5570463:+|nuORF ENST00000397747.4_1_9:5570304-5570463:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.237548828125 2 521.286411 1040.55827 0.64109 0.00033419 -1.8722 -0.00097596 -1.2311 -0.00064177 521.2855510130428 74.976 0.5407 74.499 74.28 74.821 -0.47713 26 23 2 0 0 0 8.7369 1 40985 40985 5.2307 0.47466 1 895290 45841 12832 30593 31334 53799 53799 0.03961314222465262 PIELYKQI 8 Unmodified _PIELYKQI_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7671508789062 2 502.294768 1002.57498 0.43064 0.00021631 0.098666 4.9559E-05 0.52931 0.00026587 502.29459664793967 78.726 0.21267 78.726 78.617 78.829 0 12 9 2 0 0 0 8.7369 1 43782 43782 10.183 0 1 337320 + 45842 18891 30594 31335 53800 53800 0.07379815108436105 PIEPVWFSL 9 Unmodified _PIEPVWFSL_ 0 0 0 ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 ENSG00000250423|ENST00000691062|KIAA1210 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2949829101562 2 544.294768 1086.57498 NaN NaN NaN NaN NaN NaN NaN 40.714 1 40.714 40.214 41.214 0 0 0 0 0.6032 1 21901 21901 12.532 3.1841 1 45843 10752 30595 31336 53801 53801 0.03515815108426068 PIEVAPPQ 8 Unmodified _PIEVAPPQ_ 0 0 0 REV__ENSG00000013523|ENST00000251089|ANGEL1 REV__ENSG00000013523|ENST00000251089|ANGEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.46875 1 850.466895 849.459619 0.20266 0.00017236 0.035229 2.9961E-05 0.23789 0.00020232 850.4674731072494 57.997 0.33736 57.997 57.869 58.206 0 23 13 2 0 0 0 0.78849 1 32275 32275 9.3474 0.75416 1 1085600 + 45844 17076 30596 31337 53802 53802 0.028867109774296296 PIEYQLTPY 9 Unmodified _PIEYQLTPY_ 0 0 0 nc|ENSG00000134278|Q08AE8-2|SPIRE1;ENSG00000134278|ENST00000409402|SPIRE1;nc|ENSG00000134278|Q08AE8-4|SPIRE1;nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 nc|ENSG00000134278|Q08AE8-2|SPIRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2880249023438 2 562.28714 1122.55973 0.33492 0.00018832 0.681 0.00038292 1.0159 0.00057124 562.287513339282 84.731 0.61008 84.731 84.422 85.032 0 74 29 3 0 0 0 0.59218 1 46844 46844 1.8442 0.19162 1 1596000 45845 4582 30597 31338 53803 53803 0.0033490352057015116 PIFAEQPLNI 10 Unmodified _PIFAEQPLNI_ 0 0 0 REV__ENSG00000149054|ENST00000278319|ZNF215 REV__ENSG00000149054|ENST00000278319|ZNF215 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.817138671875 2 571.316232 1140.61791 1.5468 0.0008837 0.040786 2.3302E-05 1.5876 0.000907 571.8170666290299 58.954 0.32806 52.88 52.665 52.993 -6.0745 32 17 3 0 0 0 0.24511 1 37786 37786 43.858 22.987 1 12106000 + 45846 20977 30598 31339 53804 53804 0.05322585165868077 PIFAEQPLNI 10 Unmodified _PIFAEQPLNI_ 0 0 0 REV__ENSG00000149054|ENST00000278319|ZNF215 REV__ENSG00000149054|ENST00000278319|ZNF215 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.316232 1140.61791 0.60744 0.00034704 -1.0549 -0.0006027 -0.44749 -0.00025566 571.3158865083857 53.527 0.16607 53.075 52.943 53.109 -0.45173 0.097935 -0.0010277 NaN 43.858 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1086400 + 45847 20977 30598 31339 0.05322585165868077 PIFAEQPLNI 10 Unmodified _PIFAEQPLNI_ 0 0 0 REV__ENSG00000149054|ENST00000278319|ZNF215 REV__ENSG00000149054|ENST00000278319|ZNF215 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 571.316232 1140.61791 1.5468 0.0008837 0.040786 2.3302E-05 1.5876 0.000907 571.8170666290299 58.954 0.32806 52.88 52.665 52.993 -6.0745 -0.097935 0.00022427 NaN 43.858 32 17 3 NaN NaN NaN NaN 0 NaN NaN 0 12106000 + 45848 20977 30598 31339 0.05322585165868077 PIFDDLIFGG 10 Unmodified _PIFDDLIFGG_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2837524414062 2 547.281857 1092.54916 0.52331 0.0002864 1.0849 0.00059372 1.6082 0.00088012 547.2829249833948 62.592 1.2592 62.104 61.489 62.748 -0.48764 194 60 7 0 0 0 0.33553 3 34031 33923;34031;34141 25.399 7.253 1 196410000 + 45849 21699 30599 31340 53805;53806;53807 53806 0.006589208661580415 PIFDDLIFGG 10 Unmodified _PIFDDLIFGG_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2804565429688 2 547.281857 1092.54916 0.3196 0.00017491 0.03509 1.9204E-05 0.35469 0.00019412 547.2819647963528 63 0.52027 62.514 62.385 62.905 -0.48617 43 24 2 0 0 0 0.33553 2 34386 34386;34494 25.399 7.2643 1 23682000 + 45850 21699 30599 31340 53808;53809 53808 0.006589208661580415 PIFDDLIFGG 10 Unmodified _PIFDDLIFGG_ 0 0 0 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 REV__nc|ENSG00000162877|Q6GTS8-2|PM20D1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2804565429688 2 547.281857 1092.54916 0.52331 0.0002864 1.0849 0.00059372 1.6082 0.00088012 547.2829249833948 62.592 1.2592 62.104 61.489 62.748 -0.48764 194 60 7 0 0 0 0.21571 1 34386 34386 25.399 7.2643 1 196410000 + 45851 21699 30599 31340 53810 53810 0.006589208661580415 PIFDENDELI 10 Unmodified _PIFDENDELI_ 0 0 0 ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.7886962890625 2 602.790244 1203.56593 0.17465 0.00010528 -2.0091 -0.0012111 -1.8345 -0.0011058 602.789744683067 74.291 0.40369 74.335 74.096 74.499 0.043983 34 17 3 0 0 0 0.50362 1 40945 40945 16.149 0.30192 1 1573000 45852 8464 30600 31341 53811 53811 -0.02770623038577469 PIFFPELF 8 Unmodified _PIFFPELF_ 0 0 0 ENST00000470841.1_1_1:161681590-161683167:+|nuORF ENST00000470841.1_1_1:161681590-161683167:+|nuORF ENST00000470841.1_1_1:161681590-161683167:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2722473144531 2 505.273304 1008.53206 NaN NaN NaN NaN NaN NaN NaN 87.946 1 87.946 87.446 88.446 0 0 0 0 0.97348 1 48688 48688 5.7604 1.4312 1 45853 13860 30601 31342 53812 53812 0.028130450509820548 PIFKRRLLFRR 11 Unmodified _PIFKRRLLFRR_ 0 0 0 REV__nc|ENSG00000095303|P23219-4|PTGS1 REV__nc|ENSG00000095303|P23219-4|PTGS1 MSMS AL20221201_MKP_PDAC_01 4 751.4844360351562 2 751.483154 1500.95176 NaN NaN NaN NaN NaN NaN NaN 98.433 1 92.257 91.757 92.757 -6.1757 0 0 0 0.94337 1 65288 65288 0.35063 0.35063 1 + 45854 17938 30602 31343 53813 53813 0.2213176344966996 PIFLKYGY 8 Unmodified _PIFLKYGY_ 0 0 0 REV__ENST00000485671.1_1_X:104993011-105009296:+|nuORF REV__ENST00000485671.1_1_X:104993011-105009296:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.3029174804688 2 500.778754 999.542954 1.1593 0.00058055 0.93741 0.00046944 2.0967 0.00105 500.7790035437519 63.661 0.39182 57.486 57.242 57.634 -6.1757 28 21 2 0 0 0 8.7369 1 41147 41147 11.114 0.93107 1 10050000 + 45855 22393 30603 31344 53814 53814 0.043164474252762375 PIFREYQTHQL 11 Unmodified _PIFREYQTHQL_ 0 0 0 REV__nc|ENSG00000244038|P39656-2|DDOST REV__nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 716.3712158203125 2 716.372601 1430.73065 0.96143 0.00068874 -0.62999 -0.00045131 0.33144 0.00023743 716.3720932151687 66.701 0.30641 66.71 66.561 66.868 0.0095596 45 14 4 0 0 0 0.21511 1 36569 36569 31.268 7.2478 1 36371000 + 45856 24481 30604 31345 53815 53815 0.032512338918877504 PIFREYQTHQL 11 Unmodified _PIFREYQTHQL_ 0 0 0 REV__nc|ENSG00000244038|P39656-2|DDOST REV__nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.3772583007812 2 716.372601 1430.73065 0.76813 0.00055027 0.62194 0.00044554 1.3901 0.00099581 716.3731192140424 79.076 0.88308 72.901 72.437 73.32 -6.1757 148 50 4 0 0 0 0.088819 5 51506 51506;51646;51773;51893;52020 43.772 28.524 1 55358000 + 45857 24481 30604 31345 53816;53817;53818;53819;53820 53816 0.032512338918877504 PIFREYQTHQL 11 Unmodified _PIFREYQTHQL_ 0 0 0 REV__nc|ENSG00000244038|P39656-2|DDOST REV__nc|ENSG00000244038|P39656-2|DDOST MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 716.372601 1430.73065 0.27231 0.00019508 0.0070669 5.0625E-06 0.27938 0.00020014 716.8738759844443 67.25 0.16679 66.767 66.656 66.822 -0.48219 0.028615 0.0008277 NaN 31.268 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 642360 + 45858 24481 30604 31345 0.032512338918877504 PIFTEEFLNHS 11 Unmodified _PIFTEEFLNHS_ 0 0 0 ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A ENSG00000140382|ENST00000336216|HMG20A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.3250732421875 2 667.324785 1332.63502 0.26556 0.00017722 0.0078581 5.2439E-06 0.27342 0.00018246 667.32462073168 58.412 0.29197 57.921 57.778 58.07 -0.49079 35 13 3 0 0 0 0.58219 1 31727 31727 12.241 0 1 9328700 45859 5228 30605 31346 53821 53821 -0.017995390189980753 PIFYGRPI 8 Unmodified _PIFYGRPI_ 0 0 0 ENSG00000178401|ENST00000549441|DNAJC22 ENSG00000178401|ENST00000549441|DNAJC22 ENSG00000178401|ENST00000549441|DNAJC22 MSMS AL20221201_MKP_PDAC_01 4 481.7792053222656 2 481.776545 961.538538 NaN NaN NaN NaN NaN NaN NaN 47.056 1 41.976 41.476 42.476 -5.0805 0 0 0 0.59893 1 29166 29166 34.187 6.0141 1 45860 8751 30606 31347 53822 53822 0.056229830023767136 PIGALMRSPAD 11 Unmodified _PIGALMRSPAD_ 0 0 0 REV__ENST00000263277.7_1_19:48246209-48246341:+|nuORF REV__ENST00000263277.7_1_19:48246209-48246341:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3001098632812 2 564.297516 1126.58048 1.4531 0.00081998 0.36019 0.00020325 1.8133 0.0010232 564.2977062216953 97.792 0.35863 91.616 91.441 91.8 -6.1757 75 23 4 0 0 0 0.44389 1 64730 64730 19.257 1.1106 1 262560000 + 45861 25046 30607 31348 53823 53823 0.02225170628594242 PIGDEGLAVL 10 Unmodified _PIGDEGLAVL_ 0 0 0 REV__ENST00000466630.5_1_7:55980329-55991094:+|nuORF REV__ENST00000466630.5_1_7:55980329-55991094:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2752075195312 2 492.274032 982.533512 0.77842 0.00038319 0.7794 0.00038368 1.5578 0.00076687 492.2742403429251 75.811 0.39485 69.636 69.499 69.894 -6.1757 36 20 2 0 0 0 0.39779 1 49739 49739 21.747 0 1 9499100 + 45862 27412 30608 31349 53824 53824 0.04154634349117714 PIGDGPVL 8 Unmodified _PIGDGPVL_ 0 0 0 CON__Q9U6Y5 CON__Q9U6Y5 CON__Q9U6Y5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2190551757812 2 384.218529 766.422505 NaN NaN NaN NaN NaN NaN NaN 54.498 1 54.431 53.931 54.931 -0.066936 0 0 0 0.9706 1 29597 29597 6.3541 0 1 + 45863 215 30609 31350 53825 53825 0.029950394316642814 PIGEINGNEM 10 Unmodified _PIGEINGNEM_ 0 0 0 REV__ENSG00000151320|ENST00000280979|AKAP6 REV__ENSG00000151320|ENST00000280979|AKAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2487182617188 2 537.250231 1072.48591 -0.34716 -0.00018651 -0.56819 -0.00030526 -0.91535 -0.00049177 537.2492491882844 28.799 0.40151 28.799 28.641 29.043 0 42 19 3 0 0 0 0.62068 1 14892 14892 10.074 0.72649 1 3740000 + 45864 21061 30610 31351 53826 53826 -0.04743387913413244 PIGELFKRI 9 Unmodified _PIGELFKRI_ 0 0 0 REV__ENSG00000167077|ENST00000401548|MEI1 REV__ENSG00000167077|ENST00000401548|MEI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3286743164062 2 536.829309 1071.64407 1.2608 0.00067683 -0.63929 -0.00034319 0.62151 0.00033364 536.8292959682962 95.799 0.4797 89.623 89.481 89.96 -6.1757 39 29 2 0 0 0 0.2324 1 63420 63420 28.487 3.0875 1 17729000 + 45865 22177 30611 31352 53827 53827 0.11110899127993434 PIGEWALIL 9 Unmodified _PIGEWALIL_ 0 0 0 REV__nc|ENSG00000187605|O43151-2|TET3 REV__nc|ENSG00000187605|O43151-2|TET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2992553710938 2 506.29731 1010.58007 1.0724 0.00054295 1.4104 0.00071406 2.4828 0.001257 506.2984816626866 94.593 1.3326 88.417 87.898 89.23 -6.1757 230 76 4 0 0 0 0.078417 3 62516 62516;62644;62771 38.151 2.107 1 133550000 + 45866 23644 30612 31353 53828;53829;53830 53828 0.07520118971035572 PIGMPKMSL 9 Unmodified _PIGMPKMSL_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.4942626953125 1 973.520921 972.513645 0.16928 0.0001648 -1.3326 -0.0012973 -1.1633 -0.0011325 973.5195915529036 58.899 0.46931 58.899 58.654 59.123 0 60 20 4 0 0 0 0.58466 1 32747 32747 2.3027 0.24298 1 18054000 + 45867 19967 30613 31354 53831 53831 0.026288438131359726 PIGRGRRE 8 Unmodified _PIGRGRRE_ 0 0 0 REV__ENSG00000156395|ENST00000369701|SORCS3 REV__ENSG00000156395|ENST00000369701|SORCS3 MSMS AL20221201_MKP_PDAC_01 4 470.7748718261719 2 470.7754 939.536246 NaN NaN NaN NaN NaN NaN NaN 93.046 1 86.87 86.37 87.37 -6.1757 0 0 0 0.80403 1 61560 61560 23.148 1.4018 1 + 45868 21329 30614 31355 53832 53832 0.0640594731727333 PIGSEILG 8 Unmodified _PIGSEILG_ 0 0 0 nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47 nc|ENSG00000085433|O94967-2|WDR47 nc|ENSG00000085433|O94967-2|WDR47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.22509765625 2 393.223811 784.433069 NaN NaN NaN NaN NaN NaN NaN 38.564 1 38.579 38.079 39.079 0.014828 0 0 0 0.97444 1 20512 20512 2.8892 0 1 45869 1410 30615 31356 53833 53833 0.032230220861038106 PIGTLEFKGF 10 Unmodified _PIGTLEFKGF_ 0 0 0 REV__ENST00000485881.1_1_3:137600502-137600544:+|nuORF REV__ENST00000485881.1_1_3:137600502-137600544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8064575195312 2 554.8055 1107.59645 -0.42729 -0.00023706 0.29039 0.00016111 -0.1369 -7.5955E-05 554.8056562455945 77.482 0.36288 76.999 76.827 77.189 -0.4826 39 17 3 0 0 0 0.67033 1 42497 42497 6.2058 0 1 4407100 + 45870 27788 30616 31357 53834 53834 0.04695200137143729 PIHAAGMPDI 10 Unmodified _PIHAAGMPDI_ 0 0 0 ENST00000462657.1_1_3:15731457-15737643:-|nuORF ENST00000462657.1_1_3:15731457-15737643:-|nuORF ENST00000462657.1_1_3:15731457-15737643:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2608337402344 2 511.260402 1020.50625 1.2124 0.00061984 -1.5167 -0.00077543 -0.30433 -0.00015559 511.25982876965116 70.621 0.2366 70.657 70.549 70.785 0.035507 23 10 3 0 0 0 0.31022 1 38893 38893 26.884 0 1 2016900 45871 13684 30617 31358 53835 53835 -0.003181724629371274 PIHFYLVTL 9 Unmodified _PIHFYLVTL_ 0 0 0 ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF ENST00000556551.2_1_14:74398758-74398887:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2137756347656 3 368.214699 1101.62227 NaN NaN NaN NaN NaN NaN NaN 15.568 1 15.554 15.054 16.054 -0.014067 0 0 0 0.85737 1 7646 7646 0.26902 0.033176 1 45872 15242 30618 31359 53836 53836 0.07552094379434493 PIHHSLER 8 Unmodified _PIHHSLER_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7720336914062 2 494.769783 987.525013 1.1272 0.0005577 2.5344 0.0012539 3.6616 0.0018116 494.77017694991946 101.22 0.1011 95.049 94.99 95.091 -6.1757 9 6 2 0 0 0 0.57045 1 67882 67882 28.487 0 1 40983000 45873 8170 30619 31360 53837 53837 0.03075125223131181 PIHHYQVDVK 10 Unmodified _PIHHYQVDVK_ 0 0 0 ENSG00000154654|ENST00000400546|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 ENSG00000154654|ENST00000400546|NCAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.5556030273438 3 412.555895 1234.64586 -0.46356 -0.00019125 0.66853 0.00027581 0.20497 8.4562E-05 412.556060093766 24.622 0.60264 24.622 24.301 24.904 0 55 32 2 0 0 0 0.70951 1 12477 12477 0.77653 0 1 1134600 45874 6341 30620 31361 53838 53838 0.037919081459449444 PIHKHTHVF 9 Unmodified _PIHKHTHVF_ 0 0 0 REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.3096313476562 2 558.309075 1114.6036 0.41354 0.00023088 -0.008087 -4.5151E-06 0.40545 0.00022637 558.309013806246 91.852 0.35194 91.852 91.678 92.03 0 68 28 3 0 0 0 0.32871 2 50823 50727;50823 15.847 1.9411 1 1415700 + 45875 28149 30621 31362 53839;53840 53840 0.050879775282282935 PIHKHTHVF 9 Unmodified _PIHKHTHVF_ 0 0 0 REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.308837890625 2 558.309075 1114.6036 0.61625 0.00034406 -0.68675 -0.00038342 -0.070496 -3.9358E-05 558.3086607604176 92.389 0.38837 91.908 91.697 92.085 -0.48092 51 17 4 0 0 0 0.32871 2 50525 50432;50525 15.847 1.9411 1 3038300 + 45876 28149 30621 31362 53841;53842 53842 0.050879775282282935 PIHKHTHVF 9 Unmodified _PIHKHTHVF_ 0 0 0 REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 558.309075 1114.6036 0.41354 0.00023088 -0.008087 -4.5151E-06 0.40545 0.00022637 558.309013806246 91.852 0.35194 91.852 91.678 92.03 0 -0.028034 0.00038239 NaN 15.847 68 28 3 NaN NaN NaN NaN 0 NaN NaN 0 1415700 + 45877 28149 30621 31362 0.050879775282282935 PIHKHTHVF 9 Unmodified _PIHKHTHVF_ 0 0 0 REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF REV__ENST00000510650.5_1_5:42806855-42811951:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.309075 1114.6036 0.61625 0.00034406 -0.68675 -0.00038342 -0.070496 -3.9358E-05 558.3086607604176 92.389 0.38837 91.908 91.697 92.085 -0.48092 0.028034 -0.00037542 NaN 15.847 51 17 4 NaN NaN NaN NaN 0 NaN NaN 0 3038300 + 45878 28149 30621 31362 0.050879775282282935 PIHKMRVTF 9 Unmodified _PIHKMRVTF_ 0 0 0 REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF REV__ENST00000450390.6_1_1:1189931-1190276:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 376.8825378417969 3 376.883066 1127.62737 NaN NaN NaN NaN NaN NaN NaN 78.837 1 72.661 72.161 73.161 -6.1757 0 0 0 0.71962 1 51631 51631 8.7454 3.8484 1 + 45879 27202 30622 31363 53843 53843 0.06866074970389491 PIHMHCAMA 9 Unmodified _PIHMHCAMA_ 0 0 0 REV__nc|ENSG00000165655|Q96F45-3|ZNF503 REV__nc|ENSG00000165655|Q96F45-3|ZNF503 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2718505859375 2 505.722075 1009.4296 0.1773 8.9666E-05 0.63384 0.00032055 0.81115 0.00041021 505.72240799369393 67.725 0.25055 67.242 67.119 67.37 -0.48218 19 10 2 0 0 0 0.21242 1 36982 36982 2.3027 0 1 1594600 + 45880 22033 30623 31364 53844 53844 -0.07474010555426958 PIHWKQAWEK 10 Unmodified _PIHWKQAWEK_ 0 0 0 nc|ENSG00000152936|Q8N9Z9-2|LMNTD1;nc|ENSG00000152936|Q8N9Z9-3|LMNTD1;nc|ENSG00000152936|Q8N9Z9-4|LMNTD1;nc|ENSG00000152936|Q8N9Z9|LMNTD1;ENSG00000152936|ENST00000458174|LMNTD1 nc|ENSG00000152936|Q8N9Z9-2|LMNTD1 nc|ENSG00000152936|Q8N9Z9-2|LMNTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.5716247558594 3 441.571657 1321.69314 -0.055935 -2.4699E-05 -0.051244 -2.2628E-05 -0.10718 -4.7327E-05 441.571349495013 32.041 0.22427 31.912 31.818 32.042 -0.12915 20 8 3 0 0 0 0.70895 1 16676 16676 1.9064 0 1 1699800 45881 6220 30624 31365 53845 53845 0.04516187416948014 PIIPHTLEEV 10 Unmodified _PIIPHTLEEV_ 0 0 0 REV__ENST00000481849.5_1_6:31322262-31322472:-|nuORF REV__ENST00000481849.5_1_6:31322262-31322472:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.34716796875 2 574.321514 1146.62847 1.5278 0.00087746 1.2801 0.00073519 2.8079 0.0016126 574.3224010253206 82.263 0.19715 82.325 82.197 82.394 0.061996 10 7 2 0 0 0 0.23117 1 45433 45433 11.64 2.2929 1 3210100 + 45882 27705 30625 31366 53846 53846 0.06102567820266813 PIIPTALA 8 Unmodified _PIIPTALA_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL;ENST00000433827.2_1_1:47765575-47767319:-|nuORF ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2519226074219 2 398.252372 794.49019 NaN NaN NaN NaN NaN NaN NaN 88.815 1 88.311 87.811 88.811 -0.50423 0 0 0 0.97444 1 48569 48569 0.79363 0 1 45883 3712 30626 31367 53847 53847 0.08472489362441138 PIISAEKTY 9 Unmodified _PIISAEKTY_ 0 0 0 TUBA8|p.A281T|1|0.2|ENSG00000183785|chr22:18126819-18126819|G/A|missense_variant TUBA8|p.A281T|1|0.2|ENSG00000183785|chr22:18126819-18126819|G/A|missense_variant TUBA8|p.A281T|1|0.2|ENSG00000183785|chr22:18126819-18126819|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2822875976562 2 511.281857 1020.54916 0.70423 0.00036006 2.3069 0.0011795 3.0111 0.0015395 511.28332183379814 72.666 0.26697 66.49 66.372 66.639 -6.1757 16 13 2 0 0 0 0.12841 1 47563 47563 30.225 4.8255 1 8700900 45884 30203 30627 31368 53848 53848 0.03970920866140659 PIIYGMRTKQL 11 Unmodified _PIIYGMRTKQL_ 0 0 0 ENSG00000226288|ENST00000641896|OR52I2;ENSG00000232268|ENST00000530443|OR52I1;nc|ENSG00000226288|Q8NH67|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 ENSG00000226288|ENST00000641896|OR52I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8811645507812 2 660.37884 1318.74313 0.027049 1.7863E-05 2.3432 0.0015474 2.3702 0.0015652 660.8820293227822 99.723 0.28018 93.547 93.46 93.74 -6.1757 43 19 3 0 0 0 0.32631 1 66471 66471 25.399 6.0374 1 195830000 45885 10588 30628 31369 53849 53849 0.09650554030577041 PIKDGKLVF 9 Unmodified _PIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.8085021972656 2 508.810585 1015.60662 0.076832 3.9093E-05 -0.51265 -0.00026084 -0.43582 -0.00022175 508.8103415226869 55.584 0.30819 55.516 55.358 55.666 -0.068741 35 15 3 0 0 0 0.0099157 2 30172 30172;30271 80.676 32.927 1 19176000 45886 486 30629 31370 53850;53851 53850 0.09943807862384801 PIKDGKLVF 9 Unmodified _PIKDGKLVF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953408-64953522:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.81103515625 2 508.810585 1015.60662 1.0042 0.00051096 -2.9724 -0.0015124 -1.9682 -0.0010014 508.81088429195677 60.908 0.32714 54.76 54.574 54.901 -6.1478 23 17 2 0 0 0 0.030212 1 39207 39207 55.235 15.285 1 20484000 45887 486 30629 31370 53852 53852 0.09943807862384801 PIKDKLRIL 9 Unmodified _PIKDKLRIL_ 0 0 0 REV__ENSG00000109805|ENST00000251496|NCAPG REV__ENSG00000109805|ENST00000251496|NCAPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.9129333496094 3 365.913131 1094.71756 1.3002 0.00047578 -0.72003 -0.00026347 0.58021 0.00021231 365.9127769592872 76.277 1.1395 70.101 69.48 70.62 -6.1757 151 61 3 0 0 0 0.07916 1 49977 49977 41.956 8.5106 1 41088000 + 45888 18672 30630 31371 53853 53853 0.17399447570460325 PIKERLERP 9 Unmodified _PIKERLERP_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8961486816406 3 379.89614 1136.66659 -0.55836 -0.00021212 0.40888 0.00015533 -0.14948 -5.6789E-05 379.89630546717615 18.032 0.1971 18.032 17.946 18.143 0 57 23 3 0 0 0 0.49272 1 8906 8906 4.897 1.31 1 4344700 + 45889 21725 30631 31372 53854 53854 0.10372498525589435 PIKERLERP 9 Unmodified _PIKERLERP_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.89614 1136.66659 0.063595 2.4159E-05 0.44635 0.00016957 0.50994 0.00019372 380.23020721372905 18.047 0.085236 18.053 18.03 18.115 0.0060463 0.010339 4.0594E-05 NaN 4.897 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 266580 + 45890 21725 30631 31372 0.10372498525589435 PIKKYELYKQ 10 Unmodified _PIKKYELYKQ_ 0 0 0 REV__ENST00000470594.5_1_X:51805328-51809606:-|nuORF REV__ENST00000470594.5_1_X:51805328-51809606:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2559204101562 3 437.255334 1308.74417 0.78613 0.00034374 1.217 0.00053214 2.0031 0.00087588 437.2558307343925 43.001 0.65643 42.985 42.698 43.355 -0.015667 72 30 3 0 0 0 0.71042 1 23230 23230 1.7423 0 1 9149700 + 45891 21233 30632 31373 53855 53855 0.10215091671125265 PIKNCTTTLF 10 Unmodified _PIKNCTTTLF_ 0 0 0 REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF REV__ENST00000523223.1_1_5:170679154-170679559:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3033447265625 2 569.302267 1136.58998 0.79687 0.00045366 -0.049639 -2.826E-05 0.74723 0.0004254 569.3019650084084 67.565 1.6495 61.39 60.698 62.348 -6.1757 218 95 4 0 0 0 0.095098 3 44371 44052;44371;44676 47.749 12.979 1 306750000 + 45892 28310 30633 31374 53856;53857;53858 53857 0.0271493891409591 PIKPSPPYF 9 Unmodified _PIKPSPPYF_ 0 0 0 ENSG00000171793|ENST00000650070|CTPS1;ENST00000498694.1_1_1:41474453-41475914:+|nuORF;nc|ENSG00000171793|P17812-2|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.84912109375 2 523.289485 1044.56442 NaN NaN NaN NaN NaN NaN NaN 103.29 1 103.18 102.68 103.68 -0.10458 0 0 0 0.85737 1 56338 56338 0.6015 0 1 45893 8141 30634 31375 53859 53859 0.043918324539845344 PIKQAESCSI 10 Unmodified _PIKQAESCSI_ 0 0 0 REV__ENSG00000185475|ENST00000333449|TMEM179B REV__ENSG00000185475|ENST00000333449|TMEM179B MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2755737304688 2 538.276249 1074.53795 0.28703 0.0001545 1.6248 0.00087458 1.9118 0.0010291 538.2769812905427 82.326 0.42268 76.151 75.9 76.323 -6.1757 55 22 3 0 0 0 0.50944 1 53972 53972 15.847 0 1 37633000 + 45894 23503 30635 31376 53860 53860 0.0036577550035872264 PIKVEQWY 8 Unmodified _PIKVEQWY_ 0 0 0 REV__ENSG00000137806|ENST00000260361|NDUFAF1 REV__ENSG00000137806|ENST00000260361|NDUFAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.31591796875 2 531.784567 1061.55458 0.57876 0.00030778 -1.2948 -0.00068855 -0.71603 -0.00038078 531.7837156064502 53.159 0.14151 53.159 53.08 53.221 0 7 5 2 0 0 0 8.7369 1 29437 29437 12.532 0 1 586740 + 45895 20266 30636 31377 53861 53861 0.026266444486054752 PILALRRA 8 Unmodified _PILALRRA_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2548217773438 2 455.303262 908.59197 -0.30538 -0.00013904 -0.85382 -0.00038875 -1.1592 -0.00052779 455.3027017942741 103.5 0.2873 103.45 103.28 103.57 -0.04792 17 11 2 0 0 0 8.7369 1 57402 57402 0.79363 0 1 2215300 45896 8479 30637 31378 53862 53862 0.1340178050487566 PILDDYDCEE 10 Unmodified _PILDDYDCEE_ 0 0 0 nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 nc|ENSG00000148219|O75129-2|ASTN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.243408203125 2 606.242269 1210.46998 -0.14827 -8.9889E-05 1.5119 0.00091656 1.3636 0.00082667 606.2430497074013 52.544 0.34907 52.544 52.353 52.702 0 42 15 4 0 0 0 0.6606 1 29048 29048 7.2892 3.3448 1 5812100 45897 5906 30638 31379 53863 53863 -0.1268313894097446 PILEDYVH 8 Unmodified _PILEDYVH_ 0 0 0 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENST00000464728.5_1_16:838721-840735:+|nuORF;ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2541198730469 2 493.2531 984.491647 0.51866 0.00025583 -1.1144 -0.00054967 -0.59573 -0.00029384 493.25246516448857 100.26 0.21188 100.1 99.982 100.19 -0.15751 13 7 3 0 0 0 0.77907 1 54746 54746 10.183 0 1 660280 45898 4021 30639 31380 53864 53864 -0.001219213394392682 PILNILHF 8 Unmodified _PILNILHF_ 0 0 0 REV__ENST00000315717.9_1_2:219118712-219118979:+|nuORF REV__ENST00000315717.9_1_2:219118712-219118979:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7669982910156 2 483.792195 965.569838 -0.042767 -2.069E-05 -0.46206 -0.00022354 -0.50483 -0.00024423 483.7917115203954 56.774 0.27327 56.289 56.205 56.479 -0.48554 17 12 2 0 0 0 8.7369 1 30918 30918 10.183 0 1 808660 + 45899 25463 30640 31381 53865 53865 0.08567556036462065 PILPNYFDTVI 11 Unmodified _PILPNYFDTVI_ 0 0 0 REV__nc|ENSG00000181885|O95471-2|CLDN7 REV__nc|ENSG00000181885|O95471-2|CLDN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3500366210938 2 646.350271 1290.68599 0.11043 7.1374E-05 0.68149 0.00044048 0.79191 0.00051185 646.3507357774897 66.737 0.79379 66.253 65.88 66.674 -0.48323 125 37 4 0 0 0 0.48615 1 36343 36343 17.113 0 1 10328000 + 45900 23228 30641 31382 53866 53866 0.052274100258500766 PILPNYFDTVI 11 Unmodified _PILPNYFDTVI_ 0 0 0 REV__nc|ENSG00000181885|O95471-2|CLDN7 REV__nc|ENSG00000181885|O95471-2|CLDN7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 646.350271 1290.68599 1.2091 0.00078148 -0.032998 -2.1329E-05 1.1761 0.00076015 646.3503023601343 66.164 0.4668 66.173 66.033 66.5 0.0095596 0.0081079 -0.00081039 NaN 17.113 31 23 2 NaN NaN NaN NaN 0 NaN NaN 0 1534500 + 45901 23228 30641 31382 0.052274100258500766 PILQHLKYKE 10 Unmodified _PILQHLKYKE_ 0 0 0 nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5838623046875 3 423.583562 1267.72886 1.4164 0.00059996 0.0017921 7.591E-07 1.4182 0.00060072 423.5835290335578 54.395 0.39048 48.529 48.266 48.656 -5.8653 57 23 3 0 0 0 0.40136 1 34543 34543 18.721 10.435 1 47851000 45902 5537 30642 31383 53867 53867 0.1057022487393624 PILTMQQILC 10 Unmodified _PILTMQQILC_ 0 0 0 REV__ENST00000283131.3_1_4:144449811-144451662:+|nuORF REV__ENST00000283131.3_1_4:144449811-144451662:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2008361816406 3 387.211972 1158.61409 0.0065559 2.5385E-06 -0.83069 -0.00032165 -0.82413 -0.00031911 387.21187676391344 38.867 0.45432 38.58 38.382 38.836 -0.28687 60 20 5 0 0 0 0.64628 1 20404 20404 5.0475 0 1 30955000 + 45903 25206 30643 31384 53868 53868 0.04112456076131821 PILVAVKWR 9 Unmodified _PILVAVKWR_ 0 0 0 REV__ENSG00000118276|ENST00000306851|B4GALT6 REV__ENSG00000118276|ENST00000306851|B4GALT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2335815429688 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 24.176 1 24.176 23.676 24.676 0 0 0 0 0.85798 1 12344 12344 0.23584 0 1 + 45904 19142 30644 31385 53869 53869 0.1436719574453491 PILVAVKWR 9 Unmodified _PILVAVKWR_ 0 0 0 REV__ENSG00000118276|ENST00000306851|B4GALT6 REV__ENSG00000118276|ENST00000306851|B4GALT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2332763671875 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 92.203 1 92.203 91.703 92.703 0 0 0 0 0.85798 1 50984 50984 0.23584 0 1 + 45905 19142 30644 31385 53870 53870 0.1436719574453491 PILVAVKWR 9 Unmodified _PILVAVKWR_ 0 0 0 REV__ENSG00000118276|ENST00000306851|B4GALT6 REV__ENSG00000118276|ENST00000306851|B4GALT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2322692871094 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 89.654 1 89.152 88.652 89.652 -0.50171 0 0 0 0.85798 1 49014 49014 0.23584 0 1 + 45906 19142 30644 31385 53871 53871 0.1436719574453491 PILVAVKWR 9 Unmodified _PILVAVKWR_ 0 0 0 REV__ENSG00000118276|ENST00000306851|B4GALT6 REV__ENSG00000118276|ENST00000306851|B4GALT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2322998046875 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 90.031 1 89.529 89.029 90.029 -0.50171 0 0 0 0.84737 1 49216 49216 2.4985 0 1 + 45907 19142 30644 31385 53872 53872 0.1436719574453491 PILVEEMVSL 10 Unmodified _PILVEEMVSL_ 0 0 0 REV__nc|ENSG00000164616|Q9UKT6|FBXL21P REV__nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7767944335938 2 565.3123 1128.61005 0.13146 7.4316E-05 -3.1418 -0.0017761 -3.0104 -0.0017018 565.3109011180568 78.568 0.4902 78.082 77.971 78.461 -0.48596 33 19 2 0 0 0 0.21734 1 43090 43090 16.942 2.3606 1 622390 + 45908 29752 30645 31386 53873 53873 0.05088689854073891 PILVNIISNY 10 Unmodified _PILVNIISNY_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5569152832031 3 382.557013 1144.64921 -0.31313 -0.00011979 0.27893 0.0001067 -0.034206 -1.3086E-05 382.5570184364452 40.635 0.2869 40.635 40.471 40.758 0 49 15 4 0 0 0 0.52659 2 21800 21800;21916 14.957 7.4801 1 20016000 45909 6315 30646 31387 53874;53875 53874 0.0826715819994206 PILVNIISNY 10 Unmodified _PILVNIISNY_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5569763183594 3 382.557013 1144.64921 0.29941 0.00011454 0.065055 2.4887E-05 0.36446 0.00013943 382.5569978478849 41.02 0.3009 40.717 40.563 40.863 -0.30304 38 14 3 0 0 0 0.71177 1 21776 21776 1.5923 0 1 21063000 45910 6315 30646 31387 53876 53876 0.0826715819994206 PILVNIISNY 10 Unmodified _PILVNIISNY_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.33349609375 2 573.331882 1144.64921 0.64599 0.00037037 1.0475 0.00060056 1.6935 0.00097093 573.3324605352135 57.345 0.25324 56.855 56.75 57.003 -0.48974 26 11 4 0 0 0 0.62665 1 31155 31155 10.8 3.1906 1 3355100 45911 6315 30646 31387 53877 53877 0.0826715819994206 PILVNIISNY 10 Unmodified _PILVNIISNY_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.557013 1144.64921 0.29941 0.00011454 0.065055 2.4887E-05 0.36446 0.00013943 382.5569978478849 41.02 0.3009 40.717 40.563 40.863 -0.30304 0.041363 -0.00011811 NaN 14.957 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 21063000 45912 6315 30646 31387 0.0826715819994206 PILWALGQQT 10 Unmodified _PILWALGQQT_ 0 0 0 REV__nc|ENSG00000176225|Q86VV8-3|RTTN REV__nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2137451171875 3 376.213358 1125.61824 -0.13968 -5.2551E-05 1.5414 0.00057988 1.4017 0.00052733 376.2136962802047 55.181 0.45237 55.181 54.83 55.283 0 35 19 2 0 0 0 0.71042 1 30531 30531 1.7423 0.14999 1 2603800 + 45913 22919 30647 31388 53878 53878 0.06046004885683942 PIMCTYEEM 9 Unmodified _PIMCTYEEM_ 0 0 0 REV__ENSG00000198793|ENST00000361445|MTOR REV__ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7236938476562 2 558.724146 1115.43374 0.31971 0.00017863 0.66096 0.0003693 0.98067 0.00054792 558.7246168208991 65.009 0.41541 65.009 64.831 65.247 0 63 18 5 0 0 0 0.48152 1 36232 36232 8.5933 6.0158 1 7981500 + 45914 24059 30648 31389 53879 53879 -0.11936010643034933 PIMFPSLYR 9 Unmodified _PIMFPSLYR_ 0 0 0 nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;ENSG00000078304|ENST00000694906|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C nc|ENSG00000078304|Q13362-2|PPP2R5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.3016357421875 2 562.30207 1122.58959 NaN NaN NaN NaN NaN NaN NaN 47.941 1 47.588 47.088 48.088 -0.3526 0 0 0 0.6032 1 25711 25711 12.532 0 1 45915 1242 30649 31390 53880 53880 0.03319563984928209 PIMRKKVSL 9 Unmodified _PIMRKKVSL_ 0 0 0 nc|ENSG00000145725|O43314-2|PPIP5K2;ENSG00000145725|ENST00000358359|PPIP5K2;ENST00000504083.1_1_5:102530578-102537332:+|nuORF nc|ENSG00000145725|O43314-2|PPIP5K2 nc|ENSG00000145725|O43314-2|PPIP5K2 MSMS AL20221201_MKP_PDAC_01 4 536.3168334960938 2 536.338987 1070.66342 NaN NaN NaN NaN NaN NaN NaN 102.57 1 96.392 95.892 96.892 -6.1757 0 0 0 0.70111 1 68823 68823 9.3474 0 1 45916 5717 30650 31391 53881 53881 0.13091532147245744 PIMTSNLPF 9 Unmodified _PIMTSNLPF_ 0 0 0 REV__ENST00000568015.5_1_16:24551018-24552032:+|nuORF REV__ENST00000568015.5_1_16:24551018-24552032:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2663269042969 2 510.265153 1018.51575 0.68877 0.00035146 -0.10154 -5.1811E-05 0.58723 0.00029964 510.26514902337635 39.266 0.65301 34.815 34.361 35.014 -4.4509 81 40 3 0 0 0 0.1773 1 23258 23258 25.399 0 1 37540000 + 45917 28938 30651 31392 53882 53882 0.007235958225805916 PINAYISYL 9 Unmodified _PINAYISYL_ 0 0 0 nc|ENSG00000006695|Q12887-2|COX10;ENSG00000006695|ENST00000261643|COX10 nc|ENSG00000006695|Q12887-2|COX10 nc|ENSG00000006695|Q12887-2|COX10 MSMS AL20221201_MKP_PDAC_01 4 527.2850341796875 2 527.2844 1052.55425 NaN NaN NaN NaN NaN NaN NaN 81.177 1 75.001 74.501 75.501 -6.1757 0 0 0 0.12337 1 53272 53272 39.957 5.5556 1 45918 345 30652 31393 53883 53883 0.030072247287534992 PINEKPPSF 9 Unmodified _PINEKPPSF_ 0 0 0 REV__ENST00000256497.8_1_3:5260675-5260837:+|nuORF REV__ENST00000256497.8_1_3:5260675-5260837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2691650390625 2 514.7742 1027.53385 0.61319 0.00031566 -0.43205 -0.00022241 0.18115 9.325E-05 514.77411107443 49.803 0.49319 49.803 49.582 50.075 0 66 22 5 0 0 0 0.2143 1 27576 27576 21.747 10.106 1 99121000 + 45919 24920 30653 31394 53884 53884 0.021180540689329064 PINEVTMSL 9 Unmodified _PINEVTMSL_ 0 0 0 REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF REV__ENST00000434116.6_1_15:65916409-65944223:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2790222167969 2 502.260068 1002.50558 -0.24009 -0.00012059 -1.3269 -0.00066646 -1.567 -0.00078705 502.25955508194147 70.22 0.23894 69.741 69.653 69.892 -0.47903 26 10 3 0 0 0 0.18118 1 38409 38409 19.257 3.4098 1 1546300 + 45920 17555 30654 31395 53885 53885 0.00442988097347552 PINFLEALL 9 Unmodified _PINFLEALL_ 0 0 0 REV__ENSG00000109181|ENST00000265403|UGT2B10 REV__ENSG00000109181|ENST00000265403|UGT2B10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.8473510742188 2 515.302593 1028.59063 1.5874 0.000818 -0.35534 -0.00018311 1.2321 0.0006349 515.3022907469162 100.91 0.10931 94.732 94.67 94.78 -6.1757 12 6 2 0 0 0 0.20727 1 67624 67624 7.9102 0 1 63388000 + 45921 18649 30655 31396 53886 53886 0.07748101625475101 PINIRFSEF 9 Unmodified _PINIRFSEF_ 0 0 0 REV__ENSG00000070047|ENST00000264555|PHRF1 REV__ENSG00000070047|ENST00000264555|PHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8042602539062 2 561.800749 1121.58694 0.9677 0.00054365 0.31348 0.00017611 1.2812 0.00071977 561.8006902256274 47.775 0.62157 47.737 47.385 48.007 -0.038643 88 29 4 0 0 0 0.078314 3 25620 25620;25727;25833 42.095 13.013 1 23653000 + 45922 17462 30656 31397 53887;53888;53889 53887 0.031014318516099593 PINIRFSEF 9 Unmodified _PINIRFSEF_ 0 0 0 REV__ENSG00000070047|ENST00000264555|PHRF1 REV__ENSG00000070047|ENST00000264555|PHRF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.78125 2 561.800749 1121.58694 0.9677 0.00054365 0.31348 0.00017611 1.2812 0.00071977 561.8006902256274 47.775 0.62157 47.737 47.385 48.007 -0.038643 88 29 4 0 0 0 0.19205 1 25568 25568 14.838 0.93222 1 23653000 + 45923 17462 30656 31397 53890 53890 0.031014318516099593 PINQTAAPLCV 11 Unmodified _PINQTAAPLCV_ 0 0 0 REV__ENSG00000153802|ENST00000283916|TMPRSS11D REV__ENSG00000153802|ENST00000283916|TMPRSS11D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7543334960938 2 563.799891 1125.58523 0.60997 0.0003439 -0.4983 -0.00028094 0.11167 6.2959E-05 563.7999902159672 75.205 0.30541 75.25 75.147 75.452 0.045959 23 14 2 0 0 0 0.29564 1 41550 41550 5.7319 1.7875 1 1292900 + 45924 21185 30657 31398 53891 53891 0.027460547713417327 PINTEPGYL 9 Unmodified _PINTEPGYL_ 0 0 0 REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2589416503906 2 502.258382 1002.50221 0.95746 0.00048089 -0.66992 -0.00033647 0.28754 0.00014442 502.2580284880572 54.123 0.40702 54.123 53.923 54.33 0 47 18 3 0 0 0 0.16226 1 29976 29976 26.884 6.43 1 30526000 + 45925 18988 30658 31399 53892 53892 0.0010606131501162963 PINTEPGYL 9 Unmodified _PINTEPGYL_ 0 0 0 REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2596435546875 2 502.258382 1002.50221 0.96223 0.00048329 1.0131 0.00050885 1.9754 0.00099214 502.25896364729715 62.35 0.43754 56.174 55.905 56.343 -6.1757 50 24 3 0 0 0 0.16226 2 40094 40094;40225 26.884 5.137 1 56481000 + 45926 18988 30658 31399 53893;53894 53893 0.0010606131501162963 PINYIGSTY 9 Unmodified _PINYIGSTY_ 0 0 0 REV__nc|ENSG00000079308|Q9HBL0-2|TNS1 REV__nc|ENSG00000079308|Q9HBL0-2|TNS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.2996826171875 2 514.258382 1026.50221 0.53107 0.00027311 -1.3623 -0.00070059 -0.83125 -0.00042748 514.2579340665704 84.274 0.50375 78.098 77.91 78.414 -6.1757 51 28 2 0 0 0 0.15672 1 55517 55517 20.454 5.6154 1 29425000 + 45927 17644 30659 31400 53895 53895 -0.009979386849863658 PINYYVGTAV 10 Unmodified _PINYYVGTAV_ 0 0 0 ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENST00000433853.1_1_3:183867695-183868220:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.787353515625 2 548.787307 1095.56006 4.3625 0.0023941 -3.456 -0.0018966 0.90652 0.00049749 548.7848194056053 99.151 0.24309 99.122 99.003 99.246 -0.028282 12 8 2 0 0 0 0.62068 1 55081 55081 10.074 0.6908 1 2752900 45928 13297 30660 31401 53896 53896 0.016103232404248047 PIPDHYPN 8 Unmodified _PIPDHYPN_ 0 0 0 ENST00000478432.1_1_1:146687269-146696621:-|nuORF;nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5 ENST00000478432.1_1_1:146687269-146696621:-|nuORF ENST00000478432.1_1_1:146687269-146696621:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.730712890625 2 476.729792 951.445031 1.6182 0.00077146 0.80611 0.0003843 2.4243 0.0011558 476.7299235385495 82.065 0.48349 82.127 81.887 82.371 0.061996 39 19 3 0 0 0 0.80676 1 45454 45454 2.5775 1.7838 1 28903000 45929 4350 30661 31402 53897 53897 -0.03263361170718326 PIPNVKWTK 9 Unmodified _PIPNVKWTK_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5501708984375 3 361.550082 1081.62842 1.2465 0.00045069 -0.3447 -0.00012463 0.90185 0.00032606 361.54984722981806 50.288 0.52879 50.239 49.947 50.475 -0.048824 44 25 2 0 0 0 0.57757 1 27230 27230 2.7352 0 1 1543300 45930 6400 30662 31403 53898 53898 0.09086612610917655 PIPPAAPLGE 10 Unmodified _PIPPAAPLGE_ 0 0 0 REV__nc|ENSG00000186635|Q96P48-3|ARAP1 REV__nc|ENSG00000186635|Q96P48-3|ARAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2723388671875 2 481.271293 960.528032 1.2823 0.00061716 0.5763 0.00027736 1.8586 0.00089451 481.27116241271165 41.021 0.37186 36.413 36.211 36.583 -4.6079 39 22 2 0 0 0 0.48834 1 24665 24665 16.942 0 1 17910000 + 45931 23584 30663 31404 53899 53899 0.04618955557270965 PIPRGEVADWL 11 Unmodified _PIPRGEVADWL_ 0 0 0 REV__ENST00000568631.5_2_16:2317267-2317702:-|nuORF REV__ENST00000568631.5_2_16:2317267-2317702:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.8375854492188 2 626.837862 1251.66117 NaN NaN NaN NaN NaN NaN NaN 77.82 1 77.82 77.32 78.32 0 0 0 0 0.94032 1 43260 43260 2.2828 0.63015 1 + 45932 28947 30664 31405 53900 53900 0.04540774943143333 PIPRPQNK 8 Unmodified _PIPRPQNK_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A ENSG00000007314|ENST00000435607|SCN4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2829284667969 2 475.282526 948.550499 -0.17336 -8.2395E-05 1.1481 0.00054569 0.97477 0.00046329 475.283042835065 23.932 0.226 23.932 23.811 24.037 0 23 10 3 0 0 0 0.78849 1 12211 12211 9.3474 0 1 1966000 45933 363 30665 31406 53901 53901 0.07416599745567964 PIPSSTLG 8 Unmodified _PIPSSTLG_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2156982421875 2 386.215986 770.417419 0.018687 7.2171E-06 0.79142 0.00030566 0.81011 0.00031288 386.2161589821277 18.433 0.16336 18.439 18.368 18.531 0.0060463 10 7 2 0 0 0 0.80676 1 9373 9373 2.5775 0 1 316630 45934 3344 30666 31407 53902 53902 0.023027355690715012 PIPVLSDNYS 10 Unmodified _PIPVLSDNYS_ 0 0 0 nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.6984252929688 2 552.782222 1103.54989 0.54828 0.00030308 -1.7011 -0.00094034 -1.1528 -0.00063726 552.7814173109844 58.279 0.40815 58.279 58.103 58.511 0 33 11 4 0 0 0 0.22507 1 32518 32518 7.2892 0 1 8158200 45935 16178 30667 31408 53903 53903 0.0022571551519376953 PIPYHHLMLKF 11 Unmodified _PIPYHHLMLKF_ 0 0 0 REV__ENST00000523638.5_1_19:37019405-37019450:-|nuORF REV__ENST00000523638.5_1_19:37019405-37019450:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2473754882812 3 465.925043 1394.7533 -0.02034 -9.4769E-06 3.3787 0.0015742 3.3583 0.0015647 465.9258069713409 56.931 0.35742 56.446 56.226 56.583 -0.48554 39 16 4 0 0 0 0.30445 1 30875 30875 4.4062 2.951 1 6213800 + 45936 28316 30668 31409 53904 53904 0.0717116175578667 PIQAKTFHHVY 11 Unmodified _PIQAKTFHHVY_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.9093017578125 3 447.575178 1339.70371 0.4994 0.00022352 -1.0796 -0.00048319 -0.58018 -0.00025967 447.90902438265726 38.475 0.20963 38.492 38.374 38.583 0.01704 25 9 4 0 0 0 0.053529 1 20474 20474 50.13 37.903 1 9947700 45937 7383 30669 31410 53905 53905 0.04744170071398912 PIQAKTFHHVY 11 Unmodified _PIQAKTFHHVY_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 447.5479431152344 3 447.575178 1339.70371 0.83746 0.00037483 -0.34168 -0.00015293 0.49578 0.0002219 447.5751125141638 43.459 0.22387 38.694 38.633 38.857 -4.7648 22 13 2 0 0 0 0.19616 1 26487 26487 42.068 34.122 1 17894000 45938 7383 30669 31410 53906 53906 0.04744170071398912 PIQASEPLL 9 Unmodified _PIQASEPLL_ 0 0 0 REV__nc|ENSG00000124493|Q14833-5|GRM4 REV__nc|ENSG00000124493|Q14833-5|GRM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2779846191406 2 484.276575 966.538597 0.051386 2.4885E-05 1.7731 0.00085868 1.8245 0.00088357 484.27750161181115 70.486 0.32913 70.486 70.308 70.637 0 21 13 2 0 0 0 0.28047 1 39287 39287 18.135 0 1 559810 + 45939 29615 30670 31411 53907 53907 0.05398938211715176 PIQDSWSL 8 Unmodified _PIQDSWSL_ 0 0 0 ENSG00000165490|ENST00000533655|DDIAS ENSG00000165490|ENST00000533655|DDIAS ENSG00000165490|ENST00000533655|DDIAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2371826171875 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 66.029 1 65.546 65.046 66.046 -0.48323 0 0 0 0.53879 1 36046 36046 38.151 2.107 1 45940 7345 30671 31412 53908 53908 -0.014104943735219422 PIQESGYII 9 Unmodified _PIQESGYII_ 0 0 0 REV__nc|ENSG00000106648|Q7Z4T8-2|GALNTL5 REV__nc|ENSG00000106648|Q7Z4T8-2|GALNTL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7942810058594 2 510.274032 1018.53351 0.35687 0.0001821 -0.29871 -0.00015242 0.058157 2.9676E-05 510.2738357307638 64.053 0.25956 63.568 63.458 63.718 -0.48512 22 12 2 0 0 0 0.30562 1 34893 34893 16.942 3.4344 1 1576500 + 45941 18526 30672 31413 53909 53909 0.02498634349092299 PIQGFNNIF 9 Unmodified _PIQGFNNIF_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2767333984375 2 525.274367 1048.53418 0.093873 4.9309E-05 2.7439 0.0014413 2.8378 0.0014906 525.2759454249477 76.641 0.39461 76.691 76.494 76.889 0.05011 25 16 2 0 0 0 0.25297 1 42359 42359 19.439 0 1 1720400 + 45942 21791 30673 31414 53910 53910 0.01185473788791569 PIQKVAKNLI 10 Unmodified _PIQKVAKNLI_ 0 0 0 ENSG00000163295|ENST00000295463|ALPI ENSG00000163295|ENST00000295463|ALPI ENSG00000163295|ENST00000295463|ALPI MSMS AL20221201_MKP_PDAC_01 4 375.2443237304688 3 375.24477 1122.71248 NaN NaN NaN NaN NaN NaN NaN 71.858 1 65.682 65.182 66.182 -6.1757 0 0 0 0.98857 1 46994 46994 1.9064 0 1 45943 6974 30674 31415 53911 53911 0.15603143707835443 PIQPHTSLQI 10 Unmodified _PIQPHTSLQI_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3231201171875 2 567.319306 1132.62406 0.70577 0.0004004 1.2242 0.00069449 1.9299 0.0010949 567.3201430781166 65.206 0.62889 59.03 58.715 59.344 -6.1757 85 34 3 0 0 0 0.23548 1 42494 42494 31.268 1.4278 1 103640000 45944 8125 30675 31416 53912 53912 0.06305103397380662 PIQQDHSTL 9 Unmodified _PIQQDHSTL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3009033203125 2 519.764363 1037.51417 0.37684 0.00019587 -3.5677 -0.0018544 -3.1909 -0.0016585 519.7650640880657 67.414 0.4402 66.932 66.656 67.096 -0.48219 43 19 3 0 0 0 0.17275 1 36855 36855 15.847 2.3393 1 2605400 45945 9690 30676 31417 53913 53913 -0.0030832194181584782 PIQQPVGNDEI 11 Unmodified _PIQQPVGNDEI_ 0 0 0 REV__ENSG00000124171|ENST00000371610|PARD6B REV__ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2100830078125 3 403.875182 1208.60372 0.63266 0.00025551 0.43186 0.00017442 1.0645 0.00042993 403.87539674115766 46.701 0.31174 46.365 46.25 46.562 -0.33664 27 15 2 0 0 0 0.69155 1 25067 25067 5.0475 5.0475 1 2978500 + 45946 19422 30677 31418 53914 53914 0.007758879469065505 PIQQPVGNDEI 11 Unmodified _PIQQPVGNDEI_ 0 0 0 REV__ENSG00000124171|ENST00000371610|PARD6B REV__ENSG00000124171|ENST00000371610|PARD6B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 403.875182 1208.60372 0.63266 0.00025551 0.43186 0.00017442 1.0645 0.00042993 403.87539674115766 46.701 0.31174 46.365 46.25 46.562 -0.33664 -0.066464 0.00028344 NaN 5.0475 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2978500 + 45947 19422 30677 31418 0.007758879469065505 PIQQPVGNDEI 11 Unmodified _PIQQPVGNDEI_ 0 0 0 REV__ENSG00000124171|ENST00000371610|PARD6B REV__ENSG00000124171|ENST00000371610|PARD6B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.875182 1208.60372 0.88536 0.00035757 -0.53586 -0.00021642 0.34949 0.00014115 404.2090431235176 46.531 0.18004 46.497 46.349 46.529 -0.033417 0.066464 -0.00088907 NaN 5.0475 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 722740 + 45948 19422 30677 31418 0.007758879469065505 PIQQWATL 8 Unmodified _PIQQWATL_ 0 0 0 ENST00000559834.1_1_15:91475209-91475362:-|nuORF ENST00000559834.1_1_15:91475209-91475362:-|nuORF ENST00000559834.1_1_15:91475209-91475362:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.763916015625 2 478.763635 955.512717 0.82078 0.00039296 -0.044769 -2.1434E-05 0.77602 0.00037153 478.7636192974208 42.279 0.56011 37.594 37.234 37.794 -4.6846 94 35 3 0 0 0 0.55032 1 25473 25473 30.225 4.8255 1 53552000 45949 15303 30678 31419 53915 53915 0.03318088760090632 PIQTLVNM 8 Unmodified _PIQTLVNM_ 0 0 0 nc|ENSG00000122432|Q5VX52-2|SPATA1;nc|ENSG00000122432|Q5VX52-4|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1 nc|ENSG00000122432|Q5VX52-2|SPATA1 nc|ENSG00000122432|Q5VX52-2|SPATA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2528686523438 2 458.252046 914.489538 0.17563 8.0482E-05 0.78442 0.00035946 0.96005 0.00043995 458.25244568425506 59.039 0.3385 58.548 58.412 58.75 -0.49079 32 15 3 0 0 0 0.74163 1 32201 32201 13.508 0 1 3239300 45950 16162 30679 31420 53916 53916 0.028873266511027396 PIQTLVNM 8 Oxidation (M) _PIQTLVNM(Oxidation (M))_ PIQTLVNM(1) PIQTLVNM(57) 0 0 1 nc|ENSG00000122432|Q5VX52-2|SPATA1;nc|ENSG00000122432|Q5VX52-4|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1 nc|ENSG00000122432|Q5VX52-2|SPATA1 nc|ENSG00000122432|Q5VX52-2|SPATA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2498474121094 2 466.249503 930.484453 NaN NaN NaN NaN NaN NaN NaN 41.9 1 41.891 41.391 42.391 -0.0088196 0 0 0 0.36683 1 22417 22417 57.471 10.55 1 45951 16162 30679 31421 53917 53917 1800 0.016430227884939086 PIRFWILDS 9 Unmodified _PIRFWILDS_ 0 0 0 ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-6|UEVLD ENST00000535340.5_1_11:18591643-18610207:-|nuORF ENST00000535340.5_1_11:18591643-18610207:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2483215332031 3 382.88172 1145.62333 0.75931 0.00029073 -0.58781 -0.00022506 0.1715 6.5664E-05 382.88147485556954 57.997 0.29646 57.931 57.775 58.072 -0.066036 40 14 4 0 0 0 0.21806 1 31656 31656 1.0715 0 1 15463000 45952 6090 30680 31422 53918 53918 0.0563430874833557 PIRKNLRY 8 Unmodified _PIRKNLRY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8860778808594 3 353.885576 1058.6349 0.87013 0.00030793 0.13281 4.6999E-05 1.0029 0.00035493 353.88552704397745 23.544 0.3187 20.717 20.563 20.881 -2.8273 45 18 3 0 0 0 0.70294 1 12728 12728 13.042 6.8367 1 12402000 45953 3760 30681 31423 53919 53919 0.10792550562291581 PIRKNLRY 8 Unmodified _PIRKNLRY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 530.3241577148438 2 530.324725 1058.6349 NaN NaN NaN NaN NaN NaN NaN 23.618 1 20.791 20.291 21.291 -2.8273 0 0 0 0.65904 1 12793 12793 30.225 7.0764 1 45954 3760 30681 31423 53920 53920 0.10792550562291581 PIRKNLRY 8 Unmodified _PIRKNLRY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 353.885576 1058.6349 0.010722 3.7944E-06 0.073863 2.6139E-05 0.084585 2.9933E-05 353.8858494466877 20.548 0.13779 20.559 20.488 20.626 0.010551 -0.079037 -5.9733E-05 NaN 13.042 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 305700 45955 3760 30681 31423 0.10792550562291581 PIRQEPSSF 9 Unmodified _PIRQEPSSF_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7741088867188 2 530.774731 1059.53491 -0.076712 -4.0717E-05 -0.79581 -0.0004224 -0.87252 -0.00046311 530.7742934468082 22.053 0.27471 22.053 21.929 22.204 0 32 20 2 0 0 0 0.34999 1 11218 11218 14.838 7.549 1 1502300 45956 16035 30682 31424 53921 53921 0.007522684378500344 PIRRDIAENI 10 Unmodified _PIRRDIAENI_ 0 0 0 REV__ENSG00000140575|ENST00000268182|IQGAP1 REV__ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5618286132812 3 399.56305 1195.66732 0.45589 0.00018216 -0.65094 -0.00026009 -0.19505 -7.7935E-05 399.56228050597355 56.887 0.35639 56.818 56.598 56.955 -0.068741 57 17 4 0 0 0 0.67046 1 30974 30974 6.1918 0.40842 1 44294000 + 45957 20486 30683 31425 53922 53922 0.07731293174674647 PIRSGLHKL 9 Unmodified _PIRSGLHKL_ 0 0 0 ENST00000431571.5_1_9:123906333-123914781:+|nuORF;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL ENST00000431571.5_1_9:123906333-123914781:+|nuORF ENST00000431571.5_1_9:123906333-123914781:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 510.818359375 2 510.819276 1019.624 NaN NaN NaN NaN NaN NaN NaN 86.929 1 80.753 80.253 81.253 -6.1757 0 0 0 0.58748 1 57308 57308 13.042 0.51092 1 45958 3430 30684 31426 53923 53923 0.11497148188038864 PIRYKRHF 8 Unmodified _PIRYKRHF_ 0 0 0 REV__ENSG00000109846|ENST00000650687|CRYAB REV__ENSG00000109846|ENST00000650687|CRYAB MSMS AL20221201_MKP_PDAC_01 4 558.8226318359375 2 558.824892 1115.63523 NaN NaN NaN NaN NaN NaN NaN 46.963 1 41.883 41.383 42.383 -5.0805 0 0 0 0.95201 1 29093 29093 10.183 1.5901 1 + 45959 18674 30685 31427 53924 53924 0.08203970282170303 PISAEEAPRLA 11 Unmodified _PISAEEAPRLA_ 0 0 0 REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2124328613281 3 385.211906 1152.61389 0.18192 7.0078E-05 1.043 0.00040179 1.2249 0.00047187 385.21229421855503 27.757 0.34974 27.786 27.662 28.012 0.029564 20 14 2 0 0 0 0.557 1 14439 14439 13.519 1.8873 1 9674300 + 45960 28567 30686 31428 53925 53925 0.04368495672156314 PISAEEAPRLA 11 Unmodified _PISAEEAPRLA_ 0 0 0 REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF REV__ENST00000546098.5_1_12:124458034-124458474:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.211906 1152.61389 0.18192 7.0078E-05 1.043 0.00040179 1.2249 0.00047187 385.21229421855503 27.757 0.34974 27.786 27.662 28.012 0.029564 0 0 NaN 13.519 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 9674300 + 45961 28567 30686 31428 0.04368495672156314 PISDIWAIH 9 Unmodified _PISDIWAIH_ 0 0 0 nc|ENSG00000285791|Q8IWW8-4|ADHFE1;nc|ENSG00000285791|Q8IWW8-3|ADHFE1;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;ENSG00000147576|ENST00000396623|ADHFE1 nc|ENSG00000285791|Q8IWW8-4|ADHFE1 nc|ENSG00000285791|Q8IWW8-4|ADHFE1 MSMS AL20221201_MKP_PDAC_01 4 526.283447265625 2 526.282192 1050.54983 NaN NaN NaN NaN NaN NaN NaN 85.759 1 79.583 79.083 80.083 -6.1757 0 0 0 0.36554 1 56505 56505 21.747 3.6117 1 45962 5863 30687 31429 53926 53926 0.026577603058285604 PISDMLSSF 9 Unmodified _PISDMLSSF_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7394714355469 2 498.738968 995.463383 0.12175 6.072E-05 0.2845 0.00014189 0.40625 0.00020261 498.7389091717811 46.029 0.44142 45.705 45.51 45.951 -0.32425 50 22 3 0 0 0 0.03327 1 24574 24574 53.576 0 1 10958000 + 45963 23320 30688 31430 53927 53927 -0.03452987311004563 PISFPACFLQM 11 Unmodified _PISFPACFLQM_ 0 0 0 ENSG00000184478|ENST00000641160|OR56A3 ENSG00000184478|ENST00000641160|OR56A3 ENSG00000184478|ENST00000641160|OR56A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.30712890625 2 627.306495 1252.59844 0.78979 0.00049544 -0.93199 -0.00058464 -0.1422 -8.9204E-05 627.3060194201754 79.553 0.29626 79.064 78.916 79.212 -0.48932 32 12 3 0 0 0 0.56638 1 43533 43533 13.042 3.6593 1 2380700 45964 9262 30689 31431 53928 53928 -0.0177583044091989 PISIGDPCNII 11 Carbamidomethyl (C) _PISIGDPC(Carbamidomethyl (C))NII_ PISIGDPC(1)NII PISIGDPC(46)NII 0 1 0 REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20 REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8112182617188 2 599.810456 1197.60636 0.71822 0.0004308 1.0295 0.00061753 1.7478 0.0010483 599.8110572083884 101.06 0.17661 94.883 94.78 94.956 -6.1757 17 9 2 0 0 0 0.073964 1 67724 67724 45.7 45.7 1 29503000 + 45965 18784 30690 31432 53929 53929 1036 0.01546020080195376 PISIQDKTFIF 11 Unmodified _PISIQDKTFIF_ 0 0 0 ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB ENSG00000127311|ENST00000247815|HELB MSMS AL20221201_MKP_PDAC_01 4 654.8619995117188 2 654.863546 1307.71254 NaN NaN NaN NaN NaN NaN NaN 99.408 1 93.232 92.732 93.732 -6.1757 0 0 0 0.14145 1 66196 66196 43.982 3.5333 1 45966 3995 30691 31433 53930 53930 0.07099098917183255 PISKDFDCWLI 11 Unmodified _PISKDFDCWLI_ 0 0 0 REV__ENSG00000155897|ENST00000286355|ADCY8 REV__ENSG00000155897|ENST00000286355|ADCY8 MSMS AL20221201_MKP_PDAC_01 4 668.83251953125 2 668.833931 1335.65331 NaN NaN NaN NaN NaN NaN NaN 98.733 1 92.558 92.058 93.058 -6.1757 0 0 0 0.85601 1 65535 65535 9.3831 1.473 1 + 45967 21298 30692 31434 53931 53931 -0.0010912036866557173 PISKEDQSPEL 11 Unmodified _PISKEDQSPEL_ 0 0 0 REV__ENSG00000161911|ENST00000426005|TREML1 REV__ENSG00000161911|ENST00000426005|TREML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.81298828125 2 621.81425 1241.61395 0.035896 2.2321E-05 1.7823 0.0011082 1.8182 0.0011306 621.8136953485403 55.156 0.21378 55.156 55.005 55.218 0 27 8 4 0 0 0 0.59689 1 30654 30654 11.495 1.4208 1 2631700 + 45968 21611 30693 31435 53932 53932 0.0028045088147337083 PISLTPPQ 8 Unmodified _PISLTPPQ_ 0 0 0 REV__ENSG00000185070|ENST00000330753|FLRT2 REV__ENSG00000185070|ENST00000330753|FLRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 854.85107421875 1 852.482545 851.475269 -1.1797 -0.0010056 0.79675 0.00067922 -0.38292 -0.00032643 852.4831722286257 77.487 0.48504 77.005 76.784 77.269 -0.4826 58 22 3 0 0 0 0.63229 1 42387 42387 23.148 0 1 28113000 + 45969 23468 30694 31436 53933 53933 0.04358997494466621 PISNAGPVP 9 Unmodified _PISNAGPVP_ 0 0 0 REV__ENSG00000101115|ENST00000217086|SALL4 REV__ENSG00000101115|ENST00000217086|SALL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4635620117188 1 851.462144 850.454868 0.78175 0.00066563 0.19002 0.0001618 0.97177 0.00082743 851.4621832941971 42.752 0.36102 42.752 42.586 42.947 0 43 18 3 0 0 0 0.03327 1 23106 23106 53.576 0 1 8839500 + 45970 18131 30695 31437 53934 53934 0.0236582683467077 PISPNFFKDW 10 Unmodified _PISPNFFKDW_ 0 0 0 REV__ENSG00000119927|ENST00000348367|GPAM REV__ENSG00000119927|ENST00000348367|GPAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.4497680664062 2 625.813856 1249.61316 0.90444 0.00056601 -0.55639 -0.0003482 0.34805 0.00021781 625.8134256176145 57.198 0.34103 57.132 56.998 57.339 -0.066036 50 16 4 0 0 0 0.68719 1 31195 31195 4.3292 0 1 29407000 + 45971 19220 30696 31438 53935 53935 -0.0016629897688744677 PISPVQPLL 9 Unmodified _PISPVQPLL_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2973327636719 2 482.29731 962.580068 0.58367 0.0002815 -0.4781 -0.00023059 0.10557 5.0918E-05 482.2970460439026 87.738 0.55891 87.234 86.923 87.482 -0.50423 39 26 2 0 0 0 0.2001 2 47942 47942;48044 23.148 0 1 499080 + 45972 29496 30697 31439 53936;53937 53936 0.09728118971031563 PISQESLLL 9 Unmodified _PISQESLLL_ 0 0 0 nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3 nc|ENSG00000148700|Q9UEY8-2|ADD3 nc|ENSG00000148700|Q9UEY8-2|ADD3 MSMS AL20221201_MKP_PDAC_01 4 500.2902526855469 2 500.289682 998.564812 NaN NaN NaN NaN NaN NaN NaN 76.802 1 70.627 70.127 71.127 -6.1757 0 0 0 0.074615 1 50233 50233 49.933 6.0747 1 45973 5955 30698 31440 53938 53938 0.06547207383187015 PISQRSSASL 10 Unmodified _PISQRSSASL_ 0 0 0 ENST00000307201.4_1_17:27888928-27889195:-|nuORF ENST00000307201.4_1_17:27888928-27889195:-|nuORF ENST00000307201.4_1_17:27888928-27889195:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.284423828125 2 523.285463 1044.55637 -0.38333 -0.00020059 -0.86385 -0.00045204 -1.2472 -0.00065263 523.2846920938332 28.106 0.16154 28.106 28.048 28.209 0 16 9 2 0 0 0 0.13391 1 14527 14527 41.84 3.6641 1 2244200 45974 11636 30699 31441 53939 53939 0.03587653466570373 PISSLTVPL 9 Unmodified _PISSLTVPL_ 0 0 0 REV__ENSG00000089597|ENST00000356638|GANAB REV__ENSG00000089597|ENST00000356638|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7813415527344 2 463.781493 925.548434 -0.40099 -0.00018597 0.17358 8.0502E-05 -0.22741 -0.00010547 463.7814835297787 60.966 0.42329 60.477 60.291 60.715 -0.48932 44 20 3 0 0 0 0.023164 1 33257 33257 60.39 6.814 1 13207000 + 45975 17843 30700 31442 53940 53940 0.08268126217080862 PISSWFTAML 10 Unmodified _PISSWFTAML_ 0 0 0 ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B ENSG00000095209|ENST00000374692|TMEM38B MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7950439453125 2 576.791535 1151.56852 0.5969 0.00034429 -1.026 -0.00059177 -0.42908 -0.00024749 576.7912590584087 56.879 0.2876 50.902 50.719 51.007 -5.9769 24 16 2 0 0 0 0.092434 1 36220 36220 48.346 4.4876 1 18174000 45976 1647 30701 31443 53941 53941 -0.0012044611460169108 PISTHIGNEL 10 Unmodified _PISTHIGNEL_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7875366210938 2 540.787838 1079.56112 NaN NaN NaN NaN NaN NaN NaN 40.254 1 40.254 39.754 40.754 0 0 0 0 0.47175 1 21624 21624 27.629 0.74515 1 45977 3785 30702 31444 53942 53942 0.024525376093151863 PITCILLFV 9 Unmodified _PITCILLFV_ 0 0 0 REV__nc|ENSG00000108187|P30039-2|PBLD REV__nc|ENSG00000108187|P30039-2|PBLD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7774353027344 2 509.803914 1017.59328 NaN NaN NaN NaN NaN NaN NaN 74.082 1 74.082 73.582 74.582 0 0 0 0 0.82015 1 41231 41231 5.2307 2.3415 1 + 45978 29562 30703 31445 53943 53943 0.08518233758786664 PITCLCFR 8 Unmodified _PITCLCFR_ 0 0 0 nc|ENSG00000183628|Q14129-2|DGCR6 nc|ENSG00000183628|Q14129-2|DGCR6 nc|ENSG00000183628|Q14129-2|DGCR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.742431640625 2 476.740791 951.467029 0.36076 0.00017199 2.0593 0.00098177 2.4201 0.0011538 476.74263508596 54.157 0.33421 53.691 53.507 53.841 -0.46664 24 16 2 0 0 0 0.67481 1 29347 29347 19.439 2.4967 1 1598400 45979 16448 30704 31446 53944 53944 -0.010645960181591363 PITEGPTLL 9 Unmodified _PITEGPTLL_ 0 0 0 REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7716674804688 2 470.771126 939.527698 0.50049 0.00023562 3.11 0.0014641 3.6105 0.0016997 470.7718564054763 68.335 0.64995 68.335 67.914 68.564 0 64 31 3 0 0 0 0.48152 1 38044 38044 8.5933 0 1 1499000 + 45980 28459 30705 31447 53945 53945 0.055515358374464086 PITEGPTLL 9 Unmodified _PITEGPTLL_ 0 0 0 REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.771126 939.527698 0.50049 0.00023562 3.11 0.0014641 3.6105 0.0016997 470.7718564054763 68.335 0.64995 68.335 67.914 68.564 0 0.15174 0.00080514 NaN 8.5933 64 31 3 NaN NaN NaN NaN 0 NaN NaN 0 1499000 + 45981 28459 30705 31447 0.055515358374464086 PITEGPTLL 9 Unmodified _PITEGPTLL_ 0 0 0 REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF REV__ENST00000532336.1_1_11:8602460-8615297:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.771126 939.527698 0.27806 0.0001309 2.0309 0.0009561 2.309 0.001087 470.7718972963495 68.007 0.26872 68.032 67.9 68.168 0.025146 -0.15174 -0.00021084 NaN 8.5933 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 10336000 + 45982 28459 30705 31447 0.055515358374464086 PITKFSVFF 9 Unmodified _PITKFSVFF_ 0 0 0 REV__nc|ENSG00000172350|Q9H172-4|ABCG4 REV__nc|ENSG00000172350|Q9H172-4|ABCG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3092651367188 2 543.305136 1084.59572 0.27486 0.00014933 1.0925 0.00059356 1.3674 0.00074289 543.3058959647796 99.078 0.30172 92.902 92.689 92.99 -6.1757 46 19 4 0 0 0 0.08691 1 65772 65772 36.127 1.7253 1 426170000 + 45983 22645 30706 31448 53946 53946 0.056804054881013144 PITLFKEEWRL 11 Unmodified _PITLFKEEWRL_ 0 0 0 ENST00000593003.5_1_19:9646979-9648992:-|nuORF ENST00000593003.5_1_19:9646979-9648992:-|nuORF ENST00000593003.5_1_19:9646979-9648992:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 716.4011840820312 2 716.403369 1430.79219 NaN NaN NaN NaN NaN NaN NaN 78.576 1 72.401 71.901 72.901 -6.1757 0 0 0 0.37978 1 51445 51445 29.082 15.176 1 45984 15728 30707 31449 53947 53947 0.09402165591154699 PITQEACYEPT 11 Unmodified _PITQEACYEPT_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8778991699219 3 417.856911 1250.5489 NaN NaN NaN NaN NaN NaN NaN 42.782 1 42.782 42.282 43.282 0 0 0 0 0.92234 1 23185 23185 2.8433 0.21205 1 45985 5606 30708 31450 53948 53948 -0.06634866916033388 PITYHWYHWHP 11 Unmodified _PITYHWYHWHP_ 0 0 0 ENSG00000170074|ENST00000614127|FAM153A ENSG00000170074|ENST00000614127|FAM153A ENSG00000170074|ENST00000614127|FAM153A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.9105224609375 3 512.910561 1535.70985 1.5656 0.000803 -2.7158 -0.001393 -1.1502 -0.00058997 512.9095654313614 50.069 0.24078 50.021 49.846 50.087 -0.048828 23 11 3 0 0 0 0.73114 1 27066 27066 1.3296 0.11481 1 1794900 45986 7946 30709 31451 53949 53949 -0.036573116971339914 PIVDCFGYHY 10 Unmodified _PIVDCFGYHY_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.26953125 2 607.270967 1212.52738 NaN NaN NaN NaN NaN NaN NaN 35.643 1 35.643 35.143 36.143 0 0 0 0 0.91523 1 18854 18854 7.2892 1.0834 1 + 45987 19478 30710 31452 53950 53950 -0.07038207154073461 PIVEEFQV 8 Unmodified _PIVEEFQV_ 0 0 0 ENSG00000182326|ENST00000360817|C1S ENSG00000182326|ENST00000360817|C1S ENSG00000182326|ENST00000360817|C1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.5046997070312 1 960.503674 959.496398 0.20492 0.00019683 0.091803 8.8177E-05 0.29672 0.000285 960.5036032151054 66.463 0.59 66.463 66.135 66.725 0 62 26 3 0 0 0 0.80044 1 36967 36967 6.3541 0 1 5419900 45988 9046 30711 31453 53951 53951 0.015029628033403242 PIVEGTELI 9 Unmodified _PIVEGTELI_ 0 0 0 REV__nc|ENSG00000165264|O95139-2|NDUFB6 REV__nc|ENSG00000165264|O95139-2|NDUFB6 MSMS AL20221201_MKP_PDAC_01 4 485.7768859863281 2 485.776408 969.538263 NaN NaN NaN NaN NaN NaN NaN 89.403 1 83.227 82.727 83.727 -6.1757 0 0 0 0.12337 1 59014 59014 39.957 3.8303 1 + 45989 21997 30712 31454 53952 53952 0.05227518491858518 PIVFCLCTIF 10 Unmodified _PIVFCLCTIF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8682556152344 3 385.869546 1154.58681 NaN NaN NaN NaN NaN NaN NaN 18.07 1 18.07 17.57 18.57 0 0 0 0 0.98692 1 8957 8957 2.086 0 1 45990 6389 30713 31455 53953 53953 0.015699725357308125 PIVLISQLPF 10 Unmodified _PIVLISQLPF_ 0 0 0 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2325134277344 3 376.23387 1125.67978 NaN NaN NaN NaN NaN NaN NaN 45.312 1 45.312 44.812 45.812 0 0 0 0 0.92825 1 24693 24693 3.5871 0.59182 1 45991 8576 30714 31456 53954 53954 0.12196936584973628 PIVQPSFG 8 Unmodified _PIVQPSFG_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8400573730469 2 422.731803 843.449054 0.45846 0.0001938 -0.087544 -3.7007E-05 0.37091 0.0001568 422.73165267785146 88.297 0.43951 87.793 87.561 88 -0.50423 51 19 3 0 0 0 0.80044 1 48314 48314 6.3541 0 1 5062600 45992 6155;16276 30715 31457 53955 53955 0.02106728322996787 PIVSKTTT 8 Unmodified _PIVSKTTT_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.2256774902344 2 423.750193 845.485833 -0.034806 -1.4749E-05 -0.13799 -5.8473E-05 -0.1728 -7.3222E-05 423.75010280037765 61.91 0.22225 61.91 61.821 62.044 0 13 9 2 0 0 0 8.7369 1 34544 34544 2.8892 0 1 1419400 + 45993 20095 30716 31458 53956 53956 0.05690980148881408 PIVVEPSTFY 10 Unmodified _PIVVEPSTFY_ 0 0 0 REV__ENSG00000134007|ENST00000256389|ADAM20 REV__ENSG00000134007|ENST00000256389|ADAM20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8212890625 2 576.30279 1150.59103 0.69855 0.00040258 -1.1546 -0.00066542 -0.45609 -0.00026284 576.3029402921795 68.408 0.39817 68.434 68.223 68.621 0.025146 28 19 2 0 0 0 0.23227 1 37662 37662 6.7232 0 1 2008700 + 45994 19946 30717 31459 53957 53957 0.021754765546575072 PIWAVSVGI 9 Unmodified _PIWAVSVGI_ 0 0 0 REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10 REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.8135375976562 2 471.276378 940.538203 0.41341 0.00019483 -3.1302 -0.0014752 -2.7168 -0.0012804 471.27457847418776 38.785 0.3479 34.334 34.175 34.523 -4.4509 38 21 2 0 0 0 0.18118 1 22938 22938 18.135 0 1 24564000 + 45995 21204 30718 31460 53958 53958 0.06555563282518051 PIWDNTVT 8 Unmodified _PIWDNTVT_ 0 0 0 REV__ENSG00000099937|ENST00000215727|SERPIND1 REV__ENSG00000099937|ENST00000215727|SERPIND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2373657226562 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 65.391 1 65.391 64.891 65.891 0 0 0 0 0.77249 1 36475 36475 24.674 1.5255 1 + 45996 17992 30719 31461 53959 53959 -0.014104943735219422 PIWDNTVT 8 Unmodified _PIWDNTVT_ 0 0 0 REV__ENSG00000099937|ENST00000215727|SERPIND1 REV__ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.4695434570312 1 945.467623 944.460347 -0.003533 -3.3404E-06 0.22102 0.00020897 0.21749 0.00020563 945.4670328471028 66.034 0.77725 65.551 65.125 65.902 -0.48323 62 37 2 0 0 0 0.61462 1 35969 35969 24.674 2.9272 1 7683500 + 45997 17992 30719 31461 53960 53960 -0.014104943735219422 PIWKQMHDG 9 Unmodified _PIWKQMHDG_ 0 0 0 REV__nc|ENSG00000167419|P22079-2|LPO REV__nc|ENSG00000167419|P22079-2|LPO MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.8038330078125 2 556.271301 1110.52805 1.3476 0.00074961 0.25268 0.00014056 1.6002 0.00089017 556.2723690725472 94.382 0.53394 88.206 87.947 88.481 -6.1757 49 30 2 0 0 0 0.20528 1 62584 62584 8.5933 1.304 1 41079000 + 45998 22210 30720 31462 53961 53961 -0.022793677143681634 PIWLCSLEK 9 Unmodified _PIWLCSLEK_ 0 0 0 ENST00000271308.8_1_1:109954538-109954754:-|nuORF ENST00000271308.8_1_1:109954538-109954754:-|nuORF ENST00000271308.8_1_1:109954538-109954754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2913208007812 2 544.794078 1087.5736 0.31742 0.00017293 -0.82242 -0.00044805 -0.505 -0.00027512 544.7937944606513 60.298 0.90157 60.255 59.806 60.708 -0.04351 163 46 5 0 0 0 0.2143 1 33128 33128 21.747 21.747 1 429930000 45999 11366 30721 31463 53962 53962 0.03331857748003131 PIYFRSSL 8 Unmodified _PIYFRSSL_ 0 0 0 REV__RPS6KC1|p.A896S|1|0.28|ENSG00000136643|chr1:213242162-213242162|G/T|missense_variant REV__RPS6KC1|p.A896S|1|0.28|ENSG00000136643|chr1:213242162-213242162|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7743530273438 2 491.77146 981.528367 1.0074 0.00049541 -1.7809 -0.00087582 -0.77353 -0.0003804 491.7701872476025 55.034 0.34954 49.113 48.825 49.175 -5.9211 47 21 3 0 0 0 0.46494 1 34896 34896 38.151 2.107 1 42973000 + 46000 30095 30722 31464 53963 53963 0.03686375277152365 PIYPLCLRDS 10 Unmodified _PIYPLCLRDS_ 0 0 0 REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B REV__nc|ENSG00000084710|Q9Y2G0-2|EFR3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.87255859375 3 392.874236 1175.60088 0.27634 0.00010857 -4.4845 -0.0017618 -4.2082 -0.0016533 392.87319949957487 31.294 0.19995 31.191 31.109 31.309 -0.10269 10 7 2 0 0 0 0.5802 1 16265 16265 12.175 1.2758 1 1521600 + 46001 17738 30723 31465 53964 53964 0.020103412884054706 PIYPPGSTV 9 Unmodified _PIYPPGSTV_ 0 0 0 nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;nc|ENSG00000183283|Q15038-6|DAZAP2;nc|ENSG00000183283|Q15038-3|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2548217773438 2 465.750193 929.485833 -0.28827 -0.00013426 0.81871 0.00038131 0.53044 0.00024705 465.7499852695803 32.996 0.73831 32.996 32.677 33.415 0 64 37 3 0 0 0 0.18465 1 17227 17227 24.674 1.5255 1 8132800 46002 9130 30724 31466 53965 53965 0.018269801489168458 PIYPTDGF 8 Unmodified _PIYPTDGF_ 0 0 0 REV__ENSG00000218305|ENST00000650262|CDC14C REV__ENSG00000218305|ENST00000650262|CDC14C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2221374511719 2 455.221268 908.427984 0.42134 0.0001918 -0.023561 -1.0726E-05 0.39778 0.00018108 455.22124432813234 64.517 0.30527 64.517 64.345 64.65 0 36 15 3 0 0 0 0.80624 1 35917 35917 2.8892 0 1 4065500 + 46003 24351 30725 31467 53966 53966 -0.029892817765244217 PIYRWIMK 8 Unmodified _PIYRWIMK_ 0 0 0 MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|50|3|anti-sense MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|50|3|anti-sense MER65-int_dup835|chr19:41770581-41771297:+|1.1799307102546557|0.0130686126071448|6.5|168.0|50|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.316650390625 2 553.812605 1105.61066 1.2901 0.00071447 0.49109 0.00027197 1.7812 0.00098644 554.3147213176246 95.986 0.47174 89.811 89.535 90.007 -6.1757 81 28 4 0 0 0 0.77186 1 63525 63525 14.582 5.2343 1 38190000 46004 15993 30726 31468 53967 53967 0.06207574084442058 PIYSSSCCL 9 Unmodified _PIYSSSCCL_ 0 0 0 REV__ENSG00000164951|ENST00000297598|PDP1 REV__ENSG00000164951|ENST00000297598|PDP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7131042480469 2 486.711896 971.409239 NaN NaN NaN NaN NaN NaN NaN 51.193 1 51.193 50.693 51.693 0 0 0 0 0.82015 1 28258 28258 5.2307 2.3415 1 + 46005 21966 30727 31469 53968 53968 -0.07760902734230513 PIYTNYIF 8 Unmodified _PIYTNYIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7652587890625 2 515.765843 1029.51713 0.27546 0.00014208 -2.0136 -0.0010386 -1.7382 -0.00089649 515.7649183354927 99.057 0.16555 98.864 98.752 98.917 -0.19321 10 5 2 0 0 0 0.80624 1 54101 54101 2.8892 0 1 625620 46006 9559 30728 31470 53969 53969 0.003555531829761094 PIYYYKNGF 9 Unmodified _PIYYYKNGF_ 0 0 0 REV__ENSG00000164182|ENST00000296597|NDUFAF2 REV__ENSG00000164182|ENST00000296597|NDUFAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8628540039062 3 388.862325 1163.56515 0.98543 0.0003832 -0.04037 -1.5698E-05 0.94506 0.0003675 388.86228045269075 18.19 0.28354 15.569 15.442 15.726 -2.6215 53 22 3 0 0 0 0.28047 1 9547 9547 12.241 0 1 6631400 + 46007 21888 30729 31471 53970 53970 -0.010093728969650329 PKACEDEEKF 10 Unmodified _PKACEDEEKF_ 0 0 0 REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.865478515625 3 399.181506 1194.52269 -0.54974 -0.00021945 1.715 0.00068458 1.1652 0.00046513 399.1819164539327 18.907 0.17853 18.907 18.786 18.965 0 23 14 2 0 0 0 0.71123 1 9418 9418 0.69767 0.19171 1 1017900 + 46008 17177 30730 31472 53971 53971 -0.066791360875186 PKACEDEEKF 10 Unmodified _PKACEDEEKF_ 0 0 0 REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 399.181506 1194.52269 -0.54974 -0.00021945 1.715 0.00068458 1.1652 0.00046513 399.1819164539327 18.907 0.17853 18.907 18.786 18.965 0 0 0 NaN 0.69767 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1017900 + 46009 17177 30730 31472 -0.066791360875186 PKADADPH 8 Unmodified _PKADADPH_ 0 0 0 REV__nc|ENSG00000189348|A6NNH2|FAM90A27P REV__nc|ENSG00000189348|A6NNH2|FAM90A27P MULTI-MSMS AL20221201_MKP_PDAC_01 4 850.4031982421875 1 850.405357 849.398081 1.4502 0.0012333 -2.31 -0.0019644 -0.85981 -0.00073119 850.4030848103516 104.64 0.079514 98.464 98.417 98.497 -6.1757 6 3 2 0 0 0 0.80992 1 70078 70078 0.69038 0 1 8386600 + 46010 29873 30731 31473 53972 53972 -0.03264220721871425 PKAPGKII 8 Unmodified _PKAPGKII_ 0 0 0 nc|ENSG00000101605|P52179-2|MYOM1;ENSG00000101605|ENST00000356443|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 nc|ENSG00000101605|P52179-2|MYOM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2739562988281 2 412.273638 822.532724 NaN NaN NaN NaN NaN NaN NaN 105.15 1 105.1 104.6 105.6 -0.048737 0 0 0 0.97444 1 58355 58355 0.69038 0 1 46011 1981 30732 31474 53973 53973 0.1143588449069739 PKASPKAT 8 Unmodified _PKASPKAT_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MSMS AL20221201_MKP_PDAC_01 4 400.2384033203125 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 107 1 100.83 100.33 101.33 -6.1757 0 0 0 0.97444 1 71596 71596 4.756 0 1 46012 4279 30733 31475 53974 53974 0.052661306972822786 PKAVKRRINA 10 Unmodified _PKAVKRRINA_ 0 0 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5818176269531 3 384.915646 1151.72511 -0.1458 -5.612E-05 1.1147 0.00042907 0.96891 0.00037295 384.9161999083728 35.68 0.14259 35.705 35.602 35.744 0.024967 10 6 2 0 0 0 0.24007 1 18869 18869 0.69767 0 1 4463800 46013 10370 30734 31476 53975 53975 0.15531599890755388 PKCHLGGV 8 Unmodified _PKCHLGGV_ 0 0 0 REV__ENSG00000135220|ENST00000251566|UGT2A3;REV__nc|ENSG00000156096|P06133-2|UGT2B4;REV__nc|ENSG00000135226|Q9BY64-2|UGT2B28;REV__ENSG00000109181|ENST00000265403|UGT2B10;REV__ENSG00000173610|ENST00000286604|UGT2A1 REV__ENSG00000135220|ENST00000251566|UGT2A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1898193359375 2 405.718173 809.421793 0.67669 0.00027454 0.15097 6.1251E-05 0.82766 0.0003358 405.71799177524275 68.003 0.24747 67.521 67.346 67.594 -0.48218 15 11 2 0 0 0 8.7369 1 37128 37128 2.8892 2.0956 1 1130600 + 46014 20044;20046;18649;21309;22740 30735 31477 53976 53976 0.00945921510970038 PKEDEEEDDD 10 Unmodified _PKEDEEEDDD_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000470286.1_1_2:172571934-172582592:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7254028320312 2 610.725495 1219.43644 0.14206 8.6759E-05 -0.28914 -0.00017658 -0.14708 -8.9825E-05 610.7252678379613 45.671 0.3433 45.671 45.46 45.803 0 40 17 3 0 0 0 0.71123 1 24969 24969 1.6526 0 1 10017000 46015 1216 30736 31478 53977 53977 -0.16450469179176253 PKEDFDFILF 10 Unmodified _PKEDFDFILF_ 0 0 0 ENST00000447799.5_1_12:104165049-104171017:-|nuORF ENST00000447799.5_1_12:104165049-104171017:-|nuORF ENST00000447799.5_1_12:104165049-104171017:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2170104980469 3 424.216657 1269.62814 0.10418 4.4193E-05 1.067 0.00045263 1.1711 0.00049682 424.2172944720408 19.138 0.33 19.146 19.01 19.34 0.0078487 49 19 3 0 0 0 0.71123 1 9796 9796 0.69767 0 1 1476900 46016 13485 30737 31479 53978 53978 0.004111481004201778 PKEDLIKF 8 Unmodified _PKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2881164550781 2 495.286943 988.559333 0.54963 0.00027222 -0.70912 -0.00035122 -0.15949 -7.8995E-05 495.2864259001731 53.809 0.29906 53.342 53.227 53.526 -0.46664 28 14 3 0 0 0 0.17329 1 29108 29108 80.676 11.571 1 8338000 46017 4768 30738 31480 53979 53979 0.0645952859136969 PKEDLIKF 8 Unmodified _PKEDLIKF_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.2496032714844 2 495.286943 988.559333 1.4436 0.00071498 -0.46389 -0.00022976 0.97968 0.00048522 495.2858656922803 59.003 0.28542 52.929 52.779 53.065 -6.0745 34 15 3 0 0 0 8.7369 1 37850 37850 39.95 3.8227 1 18628000 46018 4768 30738 31480 53980 53980 0.0645952859136969 PKERCVKIFQ 10 Unmodified _PKERCVKIFQ_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.351806640625 2 624.350083 1246.68561 NaN NaN NaN NaN NaN NaN NaN 36.567 1 36.588 36.088 37.088 0.021545 0 0 0 0.99388 1 19377 19377 1.3295 0.13619 1 46019 830 30739 31481 53981 53981 0.07213711824988422 PKFEKGNKL 9 Unmodified _PKFEKGNKL_ 0 0 0 REV__nc|ENSG00000077782|P11362-21|FGFR1 REV__nc|ENSG00000077782|P11362-21|FGFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2100524902344 3 354.209836 1059.60768 -0.070028 -2.4805E-05 0.46932 0.00016624 0.39929 0.00014143 354.210054866512 39.586 0.25867 39.289 39.133 39.392 -0.29716 21 11 2 0 0 0 0.34999 1 20885 20885 10.151 0 1 1370600 + 46020 17617 30740 31482 53982 53982 0.08026022231297247 PKFRLGPK 8 Unmodified _PKFRLGPK_ 0 0 0 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 REV__nc|ENSG00000165568|Q96JD6-4|AKR1E2 MSMS AL20221201_MKP_PDAC_01 4 471.7982482910156 2 471.797812 941.581071 NaN NaN NaN NaN NaN NaN NaN 8.4079 1 5.9259 5.4259 6.4259 -2.482 0 0 0 0.97444 1 4246 4246 0.69038 0 1 + 46021 22022 30741 31483 53983 53983 0.10794378130617588 PKGAKVAE 8 Unmodified _PKGAKVAE_ 0 0 0 REV__ENST00000493434.1_1_17:16338039-16340200:+|nuORF REV__ENST00000493434.1_1_17:16338039-16340200:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.2385559082031 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 107.35 1 101.17 100.67 101.67 -6.1757 0 0 0 0.97444 1 71806 71806 2.5775 0 1 + 46022 27920 30742 31484 53984 53984 0.052661306972822786 PKGAKVAE 8 Unmodified _PKGAKVAE_ 0 0 0 REV__ENST00000493434.1_1_17:16338039-16340200:+|nuORF REV__ENST00000493434.1_1_17:16338039-16340200:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.2382202148438 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 107.7 1 101.53 101.03 102.03 -6.1757 0 0 0 0.97444 1 72020 72020 0.69038 0 1 + 46023 27920 30742 31484 53985 53985 0.052661306972822786 PKGEDVVTF 9 Unmodified _PKGEDVVTF_ 0 0 0 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 REV__nc|ENSG00000176927|A4FU69-3|EFCAB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2588500976562 2 496.258382 990.502212 NaN NaN NaN NaN NaN NaN NaN 71.041 1 71.041 70.541 71.541 0 0 0 0 0.67877 1 39577 39577 10.074 3.3508 1 + 46024 22951 30743 31485 53986 53986 0.00658061315004943 PKGFKKKVLD 10 Unmodified _PKGFKKKVLD_ 0 0 0 ENSG00000158786|ENST00000375102|PLA2G2F ENSG00000158786|ENST00000375102|PLA2G2F ENSG00000158786|ENST00000375102|PLA2G2F MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3628540039062 2 580.363516 1158.71248 1.5724 0.00091254 -1.1522 -0.00066871 0.42014 0.00024383 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.72247 1 71210 71210 0.40072 0 1 10927000 46025 6608 30744 31486 53987 53987 0.13947143707832765 PKGKKITLKV 10 Unmodified _PKGKKITLKV_ 0 0 0 nc|ENSG00000165383|Q8N456-2|LRRC18;ENSG00000165383|ENST00000374160|LRRC18 nc|ENSG00000165383|Q8N456-2|LRRC18 nc|ENSG00000165383|Q8N456-2|LRRC18 MSMS AL20221201_MKP_PDAC_01 4 556.3822631835938 2 556.381709 1110.74886 NaN NaN NaN NaN NaN NaN NaN 105.53 1 99.351 98.851 99.851 -6.1757 0 0 0 0.99248 1 70705 70705 1.4819 0.95714 1 46026 7332 30745 31487 53988 53988 0.19792020604563731 PKGKLHLRL 9 Unmodified _PKGKLHLRL_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.351318359375 2 531.350743 1060.68693 1.5548 0.00082614 -0.91613 -0.00048679 0.63867 0.00033936 531.3501351787361 109.64 1.7944 103.46 102.03 103.82 -6.1757 538 355 2 0 0 0 0.61381 7 72405 72405;72624;72735;72847;73064;73278;73384 0.52476 0 1 7658800 46027 3341 30746 31488 53989;53990;53991;53992;53993;53994;53995 53989 0.15901713976063547 PKGKLHLRL 9 Unmodified _PKGKLHLRL_ 0 0 0 nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 nc|ENSG00000117868|A0FGR8-4|ESYT2 MSMS AL20221201_MKP_PDAC_01 4 531.3499145507812 2 531.350743 1060.68693 NaN NaN NaN NaN NaN NaN NaN 107.96 1 101.79 101.29 102.29 -6.1757 0 0 0 0.85798 1 72178 72178 0.52476 0 1 46028 3341 30746 31488 53996 53996 0.15901713976063547 PKGKPLAL 8 Unmodified _PKGKPLAL_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.5409545898438 1 823.54 822.532724 1.7236 0.0014195 -0.32468 -0.00026739 1.399 0.0011521 823.5394754466462 105.31 0.42809 99.131 98.816 99.244 -6.1757 265 91 4 0 0 0 0.81107 4 70351 70351;70407;70497;70630 0 0 1 3027699999.9999995 46029 4742 30747 31489 53997;53998;53999;54000 53997 0.11435884490674653 PKGKPLAL 8 Unmodified _PKGKPLAL_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2741088867188 2 412.273638 822.532724 1.7603 0.00072574 -0.045269 -1.8663E-05 1.7151 0.00070707 412.2734350598397 105.31 0.30287 99.133 98.956 99.259 -6.1757 232 76 4 0 0 0 0.80992 2 70578 70434;70578 0.69038 0 1 5137700000 46030 4742 30747 31489 54001;54002 54002 0.11435884490674653 PKGKPLAL 8 Unmodified _PKGKPLAL_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.27490234375 2 412.273638 822.532724 1.759 0.00072519 -0.1959 -8.0765E-05 1.5631 0.00064443 412.2738084921896 105.47 0.22501 99.298 99.251 99.476 -6.1757 41 25 2 0 0 0 0.80992 1 70700 70700 0.69038 0 1 13889000 46031 4742 30747 31489 54003 54003 0.11435884490674653 PKGPFRIRKSR 11 Unmodified _PKGPFRIRKSR_ 0 0 0 REV__ENST00000474329.2_1_19:56728686-56728920:-|nuORF REV__ENST00000474329.2_1_19:56728686-56728920:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.4129028320312 2 671.414937 1340.81532 NaN NaN NaN NaN NaN NaN NaN 86.036 1 86.036 85.536 86.536 0 0 0 0 0.94184 1 47664 47664 1.1933 0.735 1 + 46032 27562 30748 31490 54004 54004 0.15854649219159 PKGPPGHK 8 Unmodified _PKGPPGHK_ 0 0 0 ENSG00000204291|ENST00000375001|COL15A1 ENSG00000204291|ENST00000375001|COL15A1 ENSG00000204291|ENST00000375001|COL15A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 817.4697265625 1 817.467898 816.460622 1.795 0.0014673 1.4901 0.0012181 3.2851 0.0026854 817.4688435430069 105.35 0.098412 99.17 99.112 99.211 -6.1757 31 25 2 0 0 0 0.80992 1 70585 70585 0.69038 0 1 36101000 46033 10261 30749 31491 54005 54005 0.045049701369862305 PKGQRIFLI 9 Unmodified _PKGQRIFLI_ 0 0 0 nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3379516601562 2 536.337301 1070.66005 1.4856 0.00079677 -1.0534 -0.00056498 0.43218 0.00023179 536.3364999674029 107.16 0.33189 100.99 100.8 101.13 -6.1757 97 62 2 0 0 0 0.61381 2 71639 71639;71748 0.52476 0 1 3523000 46034 8581 30750 31492 54006;54007 54006 0.12754605364875715 PKGQRIFLI 9 Unmodified _PKGQRIFLI_ 0 0 0 nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.337646484375 2 536.337301 1070.66005 1.4854 0.00079669 -1.2675 -0.0006798 0.21794 0.00011689 536.3363151317134 108.11 0.12175 101.93 101.89 102.01 -6.1757 38 22 2 0 0 0 0.61381 1 72270 72270 0.52476 0 1 3558500 46035 8581 30750 31492 54008 54008 0.12754605364875715 PKGQRIFLI 9 Unmodified _PKGQRIFLI_ 0 0 0 nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3377075195312 2 536.337301 1070.66005 1.4855 0.00079672 -2.4895 -0.0013352 -1.004 -0.00053847 536.3350168657333 109.08 0.25476 102.9 102.77 103.02 -6.1757 81 50 2 0 0 0 0.61381 1 72890 72890 0.52476 0 1 3352200 46036 8581 30750 31492 54009 54009 0.12754605364875715 PKGRGGSVI 9 Unmodified _PKGRGGSVI_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MSMS AL20221201_MKP_PDAC_01 4 435.7624206542969 2 435.761426 869.5083 NaN NaN NaN NaN NaN NaN NaN 30.175 1 26.678 26.178 27.178 -3.497 0 0 0 0.15549 1 17013 17013 36.127 0.082828 1 46037 10083 30751 31493 54010 54010 0.06832624337198467 PKGRHKIII 9 Unmodified _PKGRHKIII_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8522338867188 2 531.350743 1060.68693 1.5542 0.00082584 0.72132 0.00038327 2.2756 0.0012091 531.3507239074098 108.14 0.11345 101.97 101.91 102.03 -6.1757 32 23 2 0 0 0 0.61381 1 72290 72290 0.52476 0 1 1751500 46038 711 30752 31494 54011 54011 0.15901713976086285 PKGRHKIII 9 Unmodified _PKGRHKIII_ 0 0 0 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 ENSG00000049541|ENST00000055077|RFC2 MSMS AL20221201_MKP_PDAC_01 4 531.0123901367188 2 531.350743 1060.68693 NaN NaN NaN NaN NaN NaN NaN 107.77 1 101.59 101.09 102.09 -6.1757 0 0 0 0.85798 1 72057 72057 0.52476 0 1 46039 711 30752 31494 54012 54012 0.15901713976086285 PKGRKRGRIK 10 Unmodified _PKGRKRGRIK_ 0 0 0 REV__nc|ENSG00000079263|Q13342-6|SP140;REV__nc|ENSG00000185404|Q9H930-1|SP140L REV__nc|ENSG00000079263|Q13342-6|SP140 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3908081054688 2 598.396548 1194.77854 1.0191 0.00060982 -0.85746 -0.0005131 0.16162 9.6716E-05 598.393848923602 105.79 0.29888 99.617 99.535 99.834 -6.1757 51 35 3 0 0 0 0.72247 1 70891 70891 0.40072 0.050084 1 6876000 + 46040 17643;23499 30753 31495 54013 54013 0.18894397393250983 PKGSGWEVSS 10 Unmodified _PKGSGWEVSS_ 0 0 0 ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2512817382812 2 517.251089 1032.48762 0.25431 0.00013154 0.12632 6.5338E-05 0.38062 0.00019688 517.2510160253961 28.345 0.20829 28.375 28.236 28.444 0.029564 12 8 2 0 0 0 0.57893 1 14776 14776 12.241 2.1667 1 1333000 46041 14936 30754 31496 54014 54014 -0.0273201083314234 PKGSGWEVSS 10 Unmodified _PKGSGWEVSS_ 0 0 0 ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.251089 1032.48762 -0.46437 -0.00024019 -2.4778 -0.0012816 -2.9421 -0.0015218 517.2499445368661 28.494 0.14054 28.494 28.438 28.579 0 0.059317 -0.0024514 NaN 12.241 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1800400 46042 14936 30754 31496 -0.0273201083314234 PKGSGWEVSS 10 Unmodified _PKGSGWEVSS_ 0 0 0 ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF ENST00000533193.5_1_11:77583314-77583383:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.251089 1032.48762 0.25431 0.00013154 0.12632 6.5338E-05 0.38062 0.00019688 517.2510160253961 28.345 0.20829 28.375 28.236 28.444 0.029564 -0.059317 0.00024256 NaN 12.241 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1333000 46043 14936 30754 31496 -0.0273201083314234 PKGSPGEPGPF 11 Unmodified _PKGSPGEPGPF_ 0 0 0 REV__ENSG00000082293|ENST00000620364|COL19A1 REV__ENSG00000082293|ENST00000620364|COL19A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2689208984375 2 535.269281 1068.52401 0.27944 0.00014958 0.3758 0.00020116 0.65525 0.00035073 535.2695145912301 79.246 0.4446 79.246 78.974 79.418 0 26 19 2 0 0 0 0.71341 1 43968 43968 2.9952 0.41776 1 695160 + 46044 17705 30755 31497 54015 54015 -0.007511339364327796 PKGTGLFH 8 Unmodified _PKGTGLFH_ 0 0 0 REV__nc|ENSG00000204091|Q3Y452|TDRG1 REV__nc|ENSG00000204091|Q3Y452|TDRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7384948730469 2 428.73742 855.460287 0.6462 0.00027705 0.07678 3.2919E-05 0.72298 0.00030997 428.73757245983995 46.295 0.44942 41.285 41.025 41.474 -5.0098 60 31 3 0 0 0 0.63229 1 28716 28716 23.148 2.2772 1 37913000 + 46045 29905 30756 31498 54016 54016 0.026775504171382636 PKGVINII 8 Unmodified _PKGVINII_ 0 0 0 ENSG00000136010|ENST00000258494|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2814025878906 2 427.278921 852.543289 1.741 0.00074387 1.472 0.00062893 3.2129 0.0013728 427.2800502993391 104.92 0.10941 98.748 98.68 98.789 -6.1757 12 7 3 0 0 0 0.80676 1 70247 70247 2.5775 1.7838 1 12501000 46046 4774 30757 31499 54017 54017 0.11111867145120868 PKGVRVKEVA 10 Unmodified _PKGVRVKEVA_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.D710Afs*8|1|0.05|ENSG00000128591|chr7:128842237-128842240|GACG/-|frameshift_variant ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2138366699219 3 361.560869 1081.66078 0.97675 0.00035315 1.1629 0.00042045 2.1396 0.00077361 361.8955948907187 49.765 0.23942 49.716 49.626 49.865 -0.048828 15 11 2 0 0 0 0.23993 1 26905 26905 0.62683 0 1 694390 46047 4073 30758 31500 54018 54018 0.12321400013956918 PKGYRKVII 9 Unmodified _PKGYRKVII_ 0 0 0 ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3447265625 2 537.345126 1072.6757 1.4707 0.00079028 -1.7129 -0.00092042 -0.24218 -0.00013014 537.3437673958299 104.83 0.17671 98.656 98.559 98.736 -6.1757 37 19 3 0 0 0 0.58865 1 70162 70162 2.0598 0.21551 1 32943000 46048 297 30759 31501 54019 54019 0.14226891881935444 PKGYTYLGC 9 Unmodified _PKGYTYLGC_ 0 0 0 REV__ENSG00000175899|ENST00000318602|A2M;REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1001.48388671875 1 1001.47608 1000.4688 0.29381 0.00029425 4.4952 0.0045019 4.789 0.0047961 1001.4812096554805 73.578 0.48262 73.578 73.44 73.922 0 34 21 2 0 0 0 0.58865 1 41087 41087 2.0598 0.21551 1 959660 + + 46049 16827;22898 30760 31502 54020 54020 -0.031412637285598066 PKHHINGL 8 Unmodified _PKHHINGL_ 0 0 0 REV__nc|ENSG00000186868|P10636|MAPT REV__nc|ENSG00000186868|P10636|MAPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.262939453125 2 458.261594 914.508634 3.1018 0.0014214 0.80449 0.00036867 3.9063 0.0017901 458.26188719145557 97.183 1.7313 97.176 96.747 98.479 -0.0070114 178 64 4 0 0 0 0.80992 1 54226 54226 0.69038 0 1 238200000 + 46050 23605 30761 31503 54021 54021 0.04796044057047766 PKHRGNWH 8 Unmodified _PKHRGNWH_ 0 0 0 REV__ENSG00000120820|ENST00000360814|GLT8D2 REV__ENSG00000120820|ENST00000360814|GLT8D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2679443359375 2 516.267742 1030.52093 NaN NaN NaN NaN NaN NaN NaN 91.559 1 91.078 90.578 91.578 -0.48092 0 0 0 0.97444 1 50044 50044 0 0 1 + 46051 19263 30762 31504 54022 54022 0.006890805201010153 PKHWMLDKL 9 Unmodified _PKHWMLDKL_ 0 0 0 ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X;ENST00000486733.2_1_X:71494866-71496063:-|nuORF;ENST00000373626.4_1_X:71494279-71497060:-|nuORF ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3230590820312 2 584.320794 1166.62703 0.27079 0.00015823 2.4811 0.0014498 2.7519 0.001608 584.3231769274676 56.428 0.24451 56.359 56.194 56.438 -0.068737 22 9 3 0 0 0 0.054978 1 30671 30671 53.833 8.1332 1 9012100 46052 4163 30763 31505 54023 54023 0.050386552505187865 PKIFILYLI 9 Unmodified _PKIFILYLI_ 0 0 0 REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 560.3629150390625 2 560.362453 1118.71035 NaN NaN NaN NaN NaN NaN NaN 109.38 1 103.21 102.71 103.71 -6.1757 0 0 0 0.85798 1 73054 73054 0.52476 0 1 + 46053 29121 30764 31506 54024 54024 0.1557471497003462 PKKDIIKF 8 Unmodified _PKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8128356933594 2 494.813128 987.611703 0.021103 1.0442E-05 -0.12341 -6.1063E-05 -0.1023 -5.0621E-05 494.8130268917809 36.13 0.2599 36.154 36.012 36.272 0.024971 21 11 3 0 0 0 0.16757 1 19110 19110 82.529 36.83 1 4200000 46054 1830 30765 31507 54025 54025 0.11740111724986946 PKKDIIKF 8 Unmodified _PKKDIIKF_ 0 0 0 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 ENSG00000100442|ENST00000396062|FKBP3 MSMS AL20221201_MKP_PDAC_01 4 494.8134155273438 2 494.813128 987.611703 NaN NaN NaN NaN NaN NaN NaN 40.144 1 35.614 35.114 36.114 -4.5294 0 0 0 0.25505 1 23937 23937 74.2 30.341 1 46055 1830 30765 31507 54026 54026 0.11740111724986946 PKKEDHCVF 9 Unmodified _PKKEDHCVF_ 0 0 0 ENST00000558036.5_1_15:101826635-101826689:-|nuORF ENST00000558036.5_1_15:101826635-101826689:-|nuORF ENST00000558036.5_1_15:101826635-101826689:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.1703491210938 3 368.183181 1101.52771 NaN NaN NaN NaN NaN NaN NaN 17.102 1 14.516 14.016 15.016 -2.5866 0 0 0 0.82396 1 8914 8914 2.7352 0.89096 1 46056 15271 30766 31508 54027 54027 -0.018987874342428768 PKKEGLSF 8 Unmodified _PKKEGLSF_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2593078613281 2 453.258185 904.501818 1.133 0.00051353 0.50832 0.0002304 1.6413 0.00074393 453.25805927462443 38.002 0.32196 33.633 33.473 33.795 -4.3689 30 19 2 0 0 0 0.15437 1 22363 22363 85.642 20.406 1 9572700 46057 6474 30767 31509 54028 54028 0.04574686385808491 PKKELNPIVLL 11 Unmodified _PKKELNPIVLL_ 0 0 0 nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2 nc|ENSG00000162687|Q6UVM3-2|KCNT2 nc|ENSG00000162687|Q6UVM3-2|KCNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.4039916992188 2 632.405381 1262.79621 1.4076 0.00089017 -1.5119 -0.0009561 -0.10425 -6.593E-05 632.4041732105775 104.27 0.12726 98.098 98.014 98.141 -6.1757 21 7 4 0 0 0 0.73115 1 69838 69838 1.3295 0.87119 1 39359000 46058 6892 30768 31510 54029 54029 0.17532255084893222 PKKIHPKKK 9 Unmodified _PKKIHPKKK_ 0 0 0 REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2 REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3746948242188 2 552.374218 1102.73388 1.5686 0.00086646 -1.375 -0.00075953 0.19358 0.00010693 552.3737407418107 105.78 0.2568 99.606 99.527 99.784 -6.1757 42 31 2 0 0 0 0.61381 1 70846 70846 0.52476 0 1 4133600 + 46059 20967 30769 31511 54030 54030 0.18662573527194581 PKKKQKKKAK 10 Unmodified _PKKKQKKKAK_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MSMS AL20221201_MKP_PDAC_01 4 606.4216918945312 2 606.419157 1210.82376 NaN NaN NaN NaN NaN NaN NaN 106.25 1 100.07 99.57 100.57 -6.1757 0 0 0 1.0024 1 71128 71128 0.40072 0.050084 1 46060 591 30770 31512 54031 54031 0.2267820313577431 PKKMWQLE 8 Unmodified _PKKMWQLE_ 0 0 0 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8585815429688 3 353.860039 1058.55829 NaN NaN NaN NaN NaN NaN NaN 17.273 1 17.273 16.773 17.773 0 0 0 0 0.97444 1 8497 8497 0.40072 0.1317 1 46061 16591 30771 31513 54032 54032 0.0313499095084353 PKKNRIAI 8 Unmodified _PKKNRIAI_ 0 0 0 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.3089904785156 2 470.308544 938.602535 0.98149 0.0004616 0.24315 0.00011435 1.2246 0.00057596 470.30879481059816 21.827 0.28396 19.092 18.935 19.219 -2.7348 25 15 2 0 0 0 0.28079 1 11705 11705 57.471 26.835 1 2100300 46062 117 30772 31514 54033 54033 0.13077763159299138 PKKQGIFH 8 Unmodified _PKKQGIFH_ 0 0 0 ENSG00000123130|ENST00000379303|ACOT9;nc|ENSG00000123130|Q9Y305|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 ENSG00000123130|ENST00000379303|ACOT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7807312011719 2 477.779619 953.544686 NaN NaN NaN NaN NaN NaN NaN 44.586 1 44.564 44.064 45.064 -0.022064 0 0 0 0.95607 1 23926 23926 9.3474 0.75416 1 46063 3682 30773 31515 54034 54034 0.06605501233912037 PKKQGIRH 8 Unmodified _PKKQGIRH_ 0 0 0 REV__nc|ENSG00000102038|P28370-2|SMARCA1 REV__nc|ENSG00000102038|P28370-2|SMARCA1 MSMS AL20221201_MKP_PDAC_01 4 482.2970886230469 2 482.295968 962.577383 NaN NaN NaN NaN NaN NaN NaN 106.96 1 100.78 100.28 101.28 -6.1757 0 0 0 0.97444 1 71569 71569 2.3027 1.6124 1 + 46064 18217 30774 31516 54035 54035 0.09459708356757801 PKKRGRPRTI 10 Unmodified _PKKRGRPRTI_ 0 0 0 nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1 nc|ENSG00000153922|O14646-2|CHD1 nc|ENSG00000153922|O14646-2|CHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8903198242188 2 604.888555 1207.76256 1.122 0.00067867 1.4635 0.00088527 2.5855 0.0015639 604.8890933791221 104.65 0.098709 98.475 98.398 98.497 -6.1757 7 4 2 0 0 0 0.71276 1 70070 70070 1.4819 0.28856 1 7427700 46065 6281 30775 31517 54036 54036 0.1669869115637539 PKKSAEFLL 9 Unmodified _PKKSAEFLL_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8087158203125 2 516.808042 1031.60153 0.45135 0.00023326 0.16646 8.6028E-05 0.61782 0.00031929 516.8081103011392 42.465 0.22038 42.456 42.36 42.581 -0.0088196 16 9 2 0 0 0 0.069655 1 22760 22760 40.239 11.158 1 4525800 46066 16597 30776 31518 54037 54037 0.08699503999764602 PKKSAEFLL 9 Unmodified _PKKSAEFLL_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF;ENST00000446498.1_1_1:26781156-26781564:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8073120117188 2 516.808042 1031.60153 0.70703 0.0003654 0.38956 0.00020133 1.0966 0.00056672 516.8081939187537 45.906 0.30489 40.951 40.759 41.064 -4.9549 28 19 2 0 0 0 0.085319 1 28328 28328 36.506 10.238 1 7242400 46067 16597 30776 31518 54038 54038 0.08699503999764602 PKLKGKKKH 9 Unmodified _PKLKGKKKH_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1063.5283203125 1 1063.70986 1062.70258 1.8121 0.0019275 -0.63903 -0.00067974 1.173 0.0012478 1063.7100008431905 82.242 0.4304 82.304 82.125 82.556 0.062004 27 16 2 0 0 0 0.21819 1 45402 45402 2.0598 1.535 1 33866000 + 46068 22981 30777 31519 54039 54039 0.17374000493123276 PKLKLKWK 8 Unmodified _PKLKLKWK_ 0 0 0 ENST00000560065.6_1_15:41066541-41071423:-|nuORF;ENST00000561018.5_1_15:41067168-41068598:-|nuORF;ENST00000559238.5_1_15:41060140-41072106:-|nuORF;ENSG00000104129|ENST00000220496|DNAJC17 ENST00000560065.6_1_15:41066541-41071423:-|nuORF ENST00000560065.6_1_15:41066541-41071423:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.9994506835938 2 520.852587 1039.69062 NaN NaN NaN NaN NaN NaN NaN 104.56 1 98.385 97.885 98.885 -6.1757 0 0 0 0.97444 1 70017 70017 0.69038 0 1 46069 2179 30778 31520 54040 54040 0.17236383749923334 PKLKVCAL 8 Carbamidomethyl (C) _PKLKVC(Carbamidomethyl (C))AL_ PKLKVC(1)AL PKLKVC(74)AL 0 1 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000416734.1_1_7:121080890-121081274:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18 ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7868957519531 2 464.786056 927.557558 0.55096 0.00025608 -0.10196 -4.7391E-05 0.449 0.00020869 464.7862510504812 46.14 0.3317 41.185 40.983 41.315 -4.9549 44 21 3 0 0 0 0.18875 2 28387 28387;28521 74.423 30.016 1 18451000 46070 858 30779 31521 54041;54042 54041 72 0.09088196301763674 PKLLLLLPLI 10 Unmodified _PKLLLLLPLI_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1 REV__ENSG00000280021|ENST00000624103|OR51F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2127380371094 3 378.273778 1131.7995 NaN NaN NaN NaN NaN NaN NaN 16.265 1 16.266 15.766 16.766 0.0010548 0 0 0 1.0061 1 8014 8014 0 0 1 + 46071 24679 30780 31522 54043 54043 0.23887549929554552 PKLLSPRLLQ 10 Unmodified _PKLLSPRLLQ_ 0 0 0 REV__ENSG00000150275|ENST00000644397|PCDH15 REV__ENSG00000150275|ENST00000644397|PCDH15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.37744140625 2 582.876791 1163.73903 1.5445 0.00090023 0.27774 0.00016189 1.8222 0.0010621 582.876703719096 104.65 0.10953 98.474 98.417 98.527 -6.1757 8 5 2 0 0 0 0.71276 1 70075 70075 1.4819 0 1 5005400 + 46072 21021 30781 31523 54044 54044 0.16370832599181995 PKLNYAYLLL 10 Unmodified _PKLNYAYLLL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3592529296875 2 604.357899 1206.70125 1.8621 0.0011254 1.0027 0.000606 2.8648 0.0017314 604.358504756675 93.952 0.32487 93.966 93.811 94.135 0.014244 29 12 3 0 0 0 0.19662 1 52208 52208 34.102 1.3168 1 3548200 + 46073 23718 30782 31524 54045 54045 0.10616321613701984 PKLRGGSL 8 Unmodified _PKLRGGSL_ 0 0 0 REV__ENSG00000115091|ENST00000263238|ACTR3 REV__ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2598266601562 2 414.25852 826.502486 0.89511 0.00037081 0.71517 0.00029626 1.6103 0.00066707 414.2588431947576 18.29 0.27323 15.669 15.54 15.813 -2.6215 46 21 3 0 0 0 0.66338 1 9575 9575 20.454 0 1 7262800 + 46074 18951 30783 31525 54046 54046 0.08229525825527162 PKLRRWLLR 9 Unmodified _PKLRRWLLR_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.4027709960938 2 619.403841 1236.79313 1.3642 0.00084502 -0.54321 -0.00033646 0.82104 0.00050856 619.4029397921037 105.85 1.1775 99.674 99.359 100.54 -6.1757 438 165 5 0 0 0 0.61381 1 70823 70823 0.52476 0 1 27090000 + 46075 17359 30784 31526 54047 54047 0.1842046954138823 PKLRVVKLAAP 11 Unmodified _PKLRVVKLAAP_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.4021606445312 2 596.400433 1190.78631 1.1449 0.00068284 -1.6244 -0.0009688 -0.47947 -0.00028596 596.3996765710543 105.66 0.21532 99.488 99.375 99.59 -6.1757 32 17 2 0 0 0 0.74157 1 70812 70812 0.35063 0.043601 1 5489300 + 46076 20579 30785 31527 54048 54048 0.19855111870151632 PKLTDGYPAF 10 Unmodified _PKLTDGYPAF_ 0 0 0 ENSG00000172073|ENST00000303254|TEX37 ENSG00000172073|ENST00000303254|TEX37 ENSG00000172073|ENST00000303254|TEX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.78857421875 2 554.787307 1107.56006 0.70568 0.0003915 0.96297 0.00053424 1.6687 0.00092575 554.7877495891049 69.065 0.34341 69.096 68.93 69.273 0.030914 40 16 3 0 0 0 0.54684 1 38037 38037 13.906 0 1 8457000 46077 8181 30786 31528 54049 54049 0.010583232404314913 PKLVAALPIHT 11 Unmodified _PKLVAALPIHT_ 0 0 0 REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.363037109375 2 580.363516 1158.71248 1.5724 0.00091254 -1.1522 -0.00066871 0.42014 0.00024383 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.74203 1 71530 71530 0.30703 0.30703 1 10927000 + 46078 25239 30787 31529 54050 54050 0.13947143707832765 PKLVAALPIHT 11 Unmodified _PKLVAALPIHT_ 0 0 0 REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3624877929688 2 580.363516 1158.71248 1.5731 0.00091299 -0.86271 -0.00050069 0.71043 0.00041231 580.3628809206962 107.45 0.28432 101.27 101.19 101.48 -6.1757 75 47 2 0 0 0 0.74203 1 71847 71847 0.30703 0.30703 1 2976500 + 46079 25239 30787 31529 54051 54051 0.13947143707832765 PKLVAALPIHT 11 Unmodified _PKLVAALPIHT_ 0 0 0 REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 580.3633422851562 2 580.363516 1158.71248 NaN NaN NaN NaN NaN NaN NaN 108.36 1 102.18 101.68 102.68 -6.1757 0 0 0 0.94307 1 72428 72428 0.30703 0.30703 1 + 46080 25239 30787 31529 54052 54052 0.13947143707832765 PKLVAALPIHT 11 Unmodified _PKLVAALPIHT_ 0 0 0 REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF REV__ENST00000291295.13_1_19:47112759-47113158:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 580.3643188476562 2 580.363516 1158.71248 NaN NaN NaN NaN NaN NaN NaN 108.67 1 102.5 102 103 -6.1757 0 0 0 0.94184 1 72620 72620 1.1933 0.66858 1 + 46081 25239 30787 31529 54053 54053 0.13947143707832765 PKMKKELPQQ 10 Unmodified _PKMKKELPQQ_ 0 0 0 REV__nc|ENSG00000116698|Q92540-2|SMG7 REV__nc|ENSG00000116698|Q92540-2|SMG7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3548583984375 2 613.849916 1225.68528 4.1922 0.0025734 -1.6766 -0.0010292 2.5156 0.0015442 613.8491903722769 98.574 0.15241 98.546 98.458 98.61 -0.028282 8 5 2 0 0 0 0.23991 1 54730 54730 1.4819 0.95714 1 509830 + 46082 19059 30788 31530 54054 54054 0.08146292105175235 PKPKLLLLL 9 Unmodified _PKPKLLLLL_ 0 0 0 REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1034.401611328125 1 1034.73361 1033.72634 -0.39562 -0.00040936 3.6106 0.003736 3.215 0.0033266 1034.738942911135 36.98 0.19876 36.73 36.644 36.843 -0.2497 12 8 2 0 0 0 0.2191 1 19420 19420 0 0 1 1859300 + 46083 26775 30789 31531 54055 54055 0.21082421206938307 PKPLAIVI 8 Unmodified _PKPLAIVI_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MSMS AL20221201_MKP_PDAC_01 4 425.7911987304688 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 10.145 1 7.6629 7.1629 8.1629 -2.482 0 0 0 0.97444 1 5112 5112 0.69038 0 1 + 46084 21045 30790 31532 54056 54056 0.13797341667554974 PKPLKSVM 8 Unmodified _PKPLKSVM_ 0 0 0 REV__ENST00000556440.6_2_17:62502882-62503020:+|nuORF REV__ENST00000556440.6_2_17:62502882-62503020:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 899.5411376953125 1 899.538286 898.531009 1.878 0.0016893 0.83293 0.00074925 2.7109 0.0024386 899.5392961306604 82.066 0.26254 82.128 82.008 82.27 0.062004 17 10 2 0 0 0 0.80676 1 45394 45394 2.5775 0 1 6182600 + 46085 28779 30791 31533 54057 54057 0.07768507410446546 PKPPGRGV 8 Unmodified _PKPPGRGV_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2460021972656 2 404.245412 806.476272 -0.024125 -9.7525E-06 0.44184 0.00017861 0.41771 0.00016886 404.2456047056184 23.942 0.5981 23.963 23.592 24.19 0.021183 44 25 2 0 0 0 0.6895 1 12361 12361 18.135 0 1 3544400 46086 9045 30792 31534 54058 54058 0.06529256654039273 PKPPGRGV 8 Unmodified _PKPPGRGV_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2458801269531 2 404.245412 806.476272 0.63582 0.00025703 0.033316 1.3468E-05 0.66913 0.00027049 404.24541749233714 26.981 0.76568 23.945 23.493 24.259 -3.0365 94 39 3 0 0 0 0.63229 3 14820 14820;14938;15062 23.148 5.0134 1 39777000 46087 9045 30792 31534 54059;54060;54061 54059 0.06529256654039273 PKPPKEKL 8 Unmodified _PKPPKEKL_ 0 0 0 nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A nc|ENSG00000185585|Q68BL7-3|OLFML2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 468.2605895996094 2 468.797478 935.580402 0.10259 4.8092E-05 -1.8477 -0.00086619 -1.7451 -0.0008181 468.7966674720017 15.393 0.13091 12.866 12.807 12.938 -2.5273 38 25 2 0 0 0 8.7369 1 7931 7931 4.756 0 1 1947100 46088 9385 30793 31535 54062 54062 0.11003538690886217 PKPRGVGP 8 Unmodified _PKPRGVGP_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2444458007812 2 404.245412 806.476272 -0.024125 -9.7525E-06 0.44184 0.00017861 0.41771 0.00016886 404.2456047056184 23.942 0.5981 23.963 23.592 24.19 0.021183 44 25 2 0 0 0 0.79669 1 12213 12213 8.5933 0 1 3544400 + 46089 20568 30794 31536 54063 54063 0.06529256654050641 PKPRGVGP 8 Unmodified _PKPRGVGP_ 0 0 0 REV__ENSG00000142347|ENST00000644032|MYO1F REV__ENSG00000142347|ENST00000644032|MYO1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2457580566406 2 404.245412 806.476272 0.63582 0.00025703 0.033316 1.3468E-05 0.66913 0.00027049 404.24541749233714 26.981 0.76568 23.945 23.493 24.259 -3.0365 94 39 3 0 0 0 0.6895 1 14706 14706 18.135 0 1 39777000 + 46090 20568 30794 31536 54064 54064 0.06529256654050641 PKPVRRRLK 9 Unmodified _PKPVRRRLK_ 0 0 0 nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1 nc|ENSG00000135597|Q96D71-2|REPS1 nc|ENSG00000135597|Q96D71-2|REPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3873901367188 2 575.388191 1148.76183 1.6306 0.00093825 -2.2468 -0.0012928 -0.61615 -0.00035453 575.3867017379324 103.41 0.1096 97.235 97.172 97.282 -6.1757 22 16 2 0 0 0 0.61381 1 69343 69343 0.52476 0 1 5245100 46091 4724 30795 31537 54065 54065 0.19339896507312915 PKPWSRTLI 9 Unmodified _PKPWSRTLI_ 0 0 0 REV__ENSG00000025423|ENST00000322165|HSD17B6 REV__ENSG00000025423|ENST00000322165|HSD17B6 MSMS AL20221201_MKP_PDAC_01 4 366.5525512695312 3 366.553715 1096.63931 NaN NaN NaN NaN NaN NaN NaN 19.328 1 16.672 16.172 17.172 -2.6564 0 0 0 0.78465 1 10229 10229 6.6304 0.89852 1 + 46092 17128 30796 31538 54066 54066 0.0948601498523658 PKPYKKRK 8 Unmodified _PKPYKKRK_ 0 0 0 REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF REV__ENST00000349223.9_1_16:68260779-68260980:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8387451171875 2 522.837468 1043.66038 1.6535 0.00086452 0.3539 0.00018503 2.0074 0.0010495 522.8375044069348 109.56 2.8772 103.38 100.94 103.82 -6.1757 1186 553 3 0 0 0 0.80992 1 71985 71985 0.69038 0 1 10843000 + 46093 25777 30797 31539 54067 54067 0.1403002508473037 PKPYMSWQC 9 Unmodified _PKPYMSWQC_ 0 0 0 nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000559868.1_1_15:51745745-51748358:-|nuORF nc|ENSG00000104093|Q8TDJ6|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3104248046875 2 570.254262 1138.49397 0.87666 0.00049992 1.7684 0.0010084 2.645 0.0015083 570.2556167175843 74.398 0.1103 73.923 73.887 73.997 -0.47588 6 4 2 0 0 0 0.21834 1 40738 40738 1.8442 0 1 541800 46094 2177 30798 31540 54068 54068 -0.06973532197616805 PKQLTLLV 8 Unmodified _PKQLTLLV_ 0 0 0 REV__ENSG00000137076|ENST00000314888|TLN1 REV__ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 911.5931396484375 1 911.59243 910.585153 -0.33227 -0.00030289 1.9176 0.0017481 1.5853 0.0014452 911.593550148846 106.02 0.19388 105.98 105.9 106.1 -0.048103 12 7 2 0 0 0 0.80992 1 58776 58776 0.69038 0 1 2232600 + 46095 20210 30799 31541 54069 54069 0.1262842283366581 PKQNIITGNF 10 Unmodified _PKQNIITGNF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3115234375 2 566.31148 1130.60841 0.6033 0.00034166 0.71634 0.00040567 1.3196 0.00074733 566.3118912726311 50.914 0.26731 50.5 50.394 50.661 -0.41351 23 12 3 0 0 0 0.48505 1 27445 27445 17.113 1.2657 1 1732700 46096 4538 30800 31542 54070 54070 0.04832816880320934 PKQPRQRL 8 Unmodified _PKQPRQRL_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.7528991699219 2 511.814525 1021.6145 0.41778 0.00021382 0.38541 0.00019726 0.80319 0.00041108 511.8148526829918 22.435 0.29384 19.657 19.498 19.792 -2.7784 35 15 3 0 0 0 8.7369 1 12144 12144 2.3027 0 1 11347000 + 46097 23384 30801 31543 54071 54071 0.10455379902521145 PKQYAYWYQQK 11 Unmodified _PKQYAYWYQQK_ 0 0 0 nc|ENSG00000211659|P01717|IGLV3-25 nc|ENSG00000211659|P01717|IGLV3-25 nc|ENSG00000211659|P01717|IGLV3-25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.9183654785156 3 501.585743 1501.7354 -0.18107 -9.0824E-05 -1.0903 -0.0005469 -1.2714 -0.00063772 501.58524063552386 18.501 0.13167 18.501 18.455 18.586 0 26 13 3 0 0 0 0.74203 1 9204 9204 0.08335 0 1 1133100 46098 16522 30802 31544 54072 54072 0.004601180346298861 PKQYAYWYQQK 11 Unmodified _PKQYAYWYQQK_ 0 0 0 nc|ENSG00000211659|P01717|IGLV3-25 nc|ENSG00000211659|P01717|IGLV3-25 nc|ENSG00000211659|P01717|IGLV3-25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.913330078125 3 501.585743 1501.7354 -0.7584 -0.0003804 -0.051163 -2.5663E-05 -0.80956 -0.00040606 501.58559405756824 19.743 0.45775 19.771 19.634 20.092 0.028357 44 25 3 0 0 0 0.74203 1 9968 9968 0.08335 0.010087 1 660310 46099 16522 30802 31544 54073 54073 0.004601180346298861 PKRAPPLAQ 9 Unmodified _PKRAPPLAQ_ 0 0 0 REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF REV__ENST00000497036.5_1_22:50691832-50699551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2983093261719 2 489.298176 976.581799 -0.40175 -0.00019658 0.60408 0.00029558 0.20233 9.9E-05 489.29847596853523 18.784 0.27694 18.807 18.649 18.926 0.023106 45 36 2 0 0 0 0.59218 1 9497 9497 1.8442 0 1 562820 + 46100 27973 30803 31545 54074 54074 0.0925717277965532 PKRGIKHALDV 11 Unmodified _PKRGIKHALDV_ 0 0 0 REV__ENSG00000188177|ENST00000409871|ZC3H6 REV__ENSG00000188177|ENST00000409871|ZC3H6 MSMS AL20221201_MKP_PDAC_01 4 617.3789672851562 2 617.374946 1232.73534 NaN NaN NaN NaN NaN NaN NaN 105.05 1 98.876 98.376 99.376 -6.1757 0 0 0 0.94184 1 70345 70345 1.1933 0.735 1 + 46101 23696 30804 31546 54075 54075 0.1282816282530348 PKRGRISTL 9 Unmodified _PKRGRISTL_ 0 0 0 REV__ENSG00000039319|ENST00000505560|ZFYVE16 REV__ENSG00000039319|ENST00000505560|ZFYVE16 MSMS AL20221201_MKP_PDAC_01 4 514.3224487304688 2 514.322183 1026.62981 NaN NaN NaN NaN NaN NaN NaN 103.6 1 97.42 96.92 97.92 -6.1757 0 0 0 0.84564 1 69449 69449 2.0598 0.21551 1 + 46102 17186 30805 31547 54076 54076 0.11756246699701478 PKRGWVWNQ 9 Unmodified _PKRGWVWNQ_ 0 0 0 ENSG00000145526|ENST00000382275|CDH18;nc|ENSG00000145526|Q13634-2|CDH18;CDH18|p.R50H|1|0.08|ENSG00000145526|chr5:19838838-19838838|C/T|missense_variant ENSG00000145526|ENST00000382275|CDH18 ENSG00000145526|ENST00000382275|CDH18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8773498535156 3 390.87708 1169.60941 1.2722 0.00049726 -0.0063893 -2.4974E-06 1.2658 0.00049476 390.8770674291614 50.229 0.58816 50.18 49.907 50.495 -0.048824 68 28 3 0 0 0 0.59218 1 27029 27029 0.96228 0.96228 1 5876800 46103 5703 30806 31548 54077 54077 0.03139076039883548 PKRKKYVK 8 Unmodified _PKRKKYVK_ 0 0 0 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 MSMS AL20221201_MKP_PDAC_01 4 523.8442993164062 2 523.845294 1045.67603 NaN NaN NaN NaN NaN NaN NaN 106.99 1 100.82 100.32 101.32 -6.1757 0 0 0 0.97444 1 71588 71588 0.69038 0.16561 1 46104 4623 30807 31549 54078 54078 0.15502311601790097 PKRLALFC 8 Unmodified _PKRLALFC_ 0 0 0 REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6 REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2785339355469 2 474.278398 946.542243 NaN NaN NaN NaN NaN NaN NaN 44.511 1 44.489 43.989 44.989 -0.022064 0 0 0 0.97348 1 23885 23885 5.7604 0 1 + 46105 18446 30808 31550 54079 54079 0.06683329504562607 PKRLRQLL 8 Unmodified _PKRLRQLL_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MSMS AL20221201_MKP_PDAC_01 4 512.34375 2 512.342918 1022.67128 NaN NaN NaN NaN NaN NaN NaN 109.93 1 103.75 103.25 104.25 -6.1757 0 0 0 0.97444 1 73387 73387 0.69038 0 1 + 46106 23319 30809 31551 54080 54080 0.16085427459029233 PKRLYLKSK 9 Unmodified _PKRLYLKSK_ 0 0 0 REV__ENST00000358344.7_1_5:177637895-177638144:+|nuORF REV__ENST00000358344.7_1_5:177637895-177638144:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.8635864257812 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.56 1 102.38 101.88 102.88 -6.1757 0 0 0 0.85798 1 72550 72550 0.52476 0 1 + 46107 25875 30810 31552 54081 54081 0.1522256342768742 PKRMEHEDAF 10 Unmodified _PKRMEHEDAF_ 0 0 0 REV__ENSG00000153157|ENST00000283141|SYCP2L REV__ENSG00000153157|ENST00000283141|SYCP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5332336425781 3 420.532762 1258.57646 0.34359 0.00014449 1.0594 0.00044551 1.403 0.00059 420.5331627966052 52.922 0.41148 52.858 52.704 53.115 -0.063423 63 20 4 0 0 0 0.69626 1 28653 28653 3.3196 0.58445 1 11299000 + 46108 21155 30811 31553 54082 54082 -0.04248918865118867 PKRNMFSP 8 Unmodified _PKRNMFSP_ 0 0 0 ENST00000397174.6_2_1:41608656-41618308:-|nuORF ENST00000397174.6_2_1:41608656-41618308:-|nuORF ENST00000397174.6_2_1:41608656-41618308:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.7554321289062 2 488.755287 975.496021 NaN NaN NaN NaN NaN NaN NaN 51.409 1 45.76 45.26 46.26 -5.649 0 0 0 0.92452 1 32347 32347 15.847 1.2655 1 46109 12818 30812 31554 54083 54083 0.007292646024893656 PKRQKLIH 8 Unmodified _PKRQKLIH_ 0 0 0 REV__ENSG00000139083|ENST00000396373|ETV6 REV__ENSG00000139083|ENST00000396373|ETV6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3285217285156 2 510.327268 1018.63998 NaN NaN NaN NaN NaN NaN NaN 104.27 1 104.22 103.72 104.72 -0.048737 0 0 0 0.97444 1 57892 57892 0.69038 0 1 + 46110 20383 30813 31555 54084 54084 0.13140854424943882 PKRRKKRY 8 Unmodified _PKRRKKRY_ 0 0 0 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3662719726562 2 566.364716 1130.71488 1.7268 0.00097801 -0.38685 -0.0002191 1.34 0.00075891 566.3641038801452 105.12 0.41135 98.948 98.76 99.171 -6.1757 225 72 6 0 0 0 0.80992 1 70329 70329 0.69038 0 1 18463000000 46111 6775 30814 31556 54085 54085 0.15475036956172517 PKRRKKRY 8 Unmodified _PKRRKKRY_ 0 0 0 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 MSMS AL20221201_MKP_PDAC_01 4 566.0379028320312 2 566.364716 1130.71488 NaN NaN NaN NaN NaN NaN NaN 106.86 1 100.69 100.19 101.19 -6.1757 0 0 0 0.97444 1 71511 71511 0.69038 0 1 46112 6775 30814 31556 54086 54086 0.15475036956172517 PKRRRKPQ 8 Unmodified _PKRRRKPQ_ 0 0 0 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.341064453125 2 533.341241 1064.66793 0.7848 0.00041857 -1.1604 -0.00061889 -0.37561 -0.00020033 533.3405930610185 99.193 0.30255 93.018 92.841 93.144 -6.1757 44 17 4 0 0 0 0.80992 1 65954 65954 0.69038 0 1 153260000 46113 7990 30815 31557 54087 54087 0.1381817740502811 PKSELIINY 9 Unmodified _PKSELIINY_ 0 0 0 REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2;REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 REV__nc|ENSG00000176406|Q9UQ26-8|RIMS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8016357421875 2 538.802957 1075.59136 0.95236 0.00051314 0.7866 0.00042382 1.739 0.00093696 538.8033857939075 88.858 0.61929 82.682 82.477 83.096 -6.1757 59 34 2 0 0 0 0.15471 1 58812 58812 27.629 0 1 28669000 + 46114 29802;29803 30816 31558 54088 54088 0.05658896274530889 PKSGTLEGP 9 Unmodified _PKSGTLEGP_ 0 0 0 ENST00000472962.1_1_2:74708942-74709050:-|nuORF;ENST00000454193.5_2_2:74708646-74709050:-|nuORF ENST00000472962.1_1_2:74708942-74709050:-|nuORF ENST00000472962.1_1_2:74708942-74709050:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.4637451171875 2 443.23745 884.460347 NaN NaN NaN NaN NaN NaN NaN 28.913 1 28.944 28.444 29.444 0.030106 0 0 0 0.83049 1 15069 15069 3.9444 0 1 46115 13568 30817 31559 54089 54089 0.013495056264787308 PKSKSPLQW 9 Unmodified _PKSKSPLQW_ 0 0 0 nc|ENSG00000117091|P09326-2|CD48 nc|ENSG00000117091|P09326-2|CD48 nc|ENSG00000117091|P09326-2|CD48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.539306640625 3 357.537953 1069.59203 0.39976 0.00014293 1.6283 0.00058216 2.028 0.00072509 357.87277311176894 43.243 0.44058 43.227 42.936 43.377 -0.015667 44 20 3 0 0 0 0.56345 1 23122 23122 2.086 0.49373 1 10413000 46116 16148 30818 31560 54090 54090 0.06001735714221468 PKSKSPLQW 9 Unmodified _PKSKSPLQW_ 0 0 0 nc|ENSG00000117091|P09326-2|CD48 nc|ENSG00000117091|P09326-2|CD48 nc|ENSG00000117091|P09326-2|CD48 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 357.537953 1069.59203 0.036495 1.3048E-05 1.3031 0.00046591 1.3396 0.00047896 357.5383384028982 43.371 0.27853 43.371 43.183 43.461 0 0.072022 -0.00023042 NaN 2.086 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1929500 46117 16148 30818 31560 0.06001735714221468 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.723876953125 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 1.2508 1 1.2301 0.73015 1.7301 -0.020623 0 0 0 0.97444 1 646 646 0.69038 0 1 + 46118 19452 30819 31561 54091 54091 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7243347167969 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 3.6406 1 1.1586 0.65862 1.6586 -2.482 0 0 0 0.96305 1 1847 1847 7.9102 0 1 + 46119 19452 30819 31561 54092 54092 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7244567871094 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 4.1786 1 1.6966 1.1966 2.1966 -2.482 0 0 0 0.96606 1 2119 2119 7.2892 0 1 + 46120 19452 30819 31561 54093 54093 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7247619628906 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 4.5231 1 2.0411 1.5411 2.5411 -2.482 0 0 0 0.9489 1 2296 2296 10.824 0 1 + 46121 19452 30819 31561 54094 54094 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7249450683594 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 4.871 1 2.389 1.889 2.889 -2.482 0 0 0 0.96606 1 2471 2471 7.2892 0 1 + 46122 19452 30819 31561 54095 54095 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.724853515625 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 5.0784 1 2.5965 2.0965 3.0965 -2.482 0 0 0 0.9489 1 2581 2581 10.824 0 1 + 46123 19452 30819 31561 54096 54096 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7249755859375 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 5.4263 1 2.9444 2.4444 3.4444 -2.482 0 0 0 0.92452 1 2754 2754 15.847 0 1 + 46124 19452 30819 31561 54097 54097 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7243347167969 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 5.5987 1 3.1167 2.6167 3.6167 -2.482 0 0 0 0.9489 1 2840 2840 10.824 0 1 + 46125 19452 30819 31561 54098 54098 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7246704101562 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 5.8816 1 3.3997 2.8997 3.8997 -2.482 0 0 0 0.9489 1 2981 2981 10.824 0 1 + 46126 19452 30819 31561 54099 54099 0.02290441805962473 PKSLGGTF 8 Unmodified _PKSLGGTF_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20221201_MKP_PDAC_01 4 403.7246704101562 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 6.147 1 3.6651 3.1651 4.1651 -2.482 0 0 0 0.96606 1 3112 3112 7.2892 0 1 + 46127 19452 30819 31561 54100 54100 0.02290441805962473 PKTILQPYL 9 Unmodified _PKTILQPYL_ 0 0 0 REV__ENSG00000121316|ENST00000240617|PLBD1 REV__ENSG00000121316|ENST00000240617|PLBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2188720703125 3 358.21822 1071.63283 1.5295 0.0005479 2.5729 0.00092166 4.1024 0.0014696 358.2193259675225 42.905 0.26707 38.221 38.072 38.339 -4.6846 26 16 2 0 0 0 0.46162 1 26014 26014 9.544 1.935 1 7042400 + 46128 19288 30820 31562 54101 54101 0.09988077033835907 PKTKKKKHR 9 Unmodified _PKTKKKKHR_ 0 0 0 REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF REV__ENST00000565559.5_2_15:42697105-42701567:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.8786010742188 2 575.880199 1149.74584 NaN NaN NaN NaN NaN NaN NaN 109.69 1 103.51 103.01 104.01 -6.1757 0 0 0 0.86054 1 73239 73239 0.45834 0.45834 1 + 46129 28910 30821 31563 54102 54102 0.1769619027038516 PKTSRLYSY 9 Unmodified _PKTSRLYSY_ 0 0 0 REV__ENSG00000143536|ENST00000271835|CRNN REV__ENSG00000143536|ENST00000271835|CRNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.866455078125 3 372.201229 1113.58186 0.018399 6.8482E-06 -1.0933 -0.00040693 -1.0749 -0.00040008 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.49272 1 17848 17848 4.897 0 1 285750000 + 46130 20649 30822 31564 54103 54103 0.02961127988987755 PKTVFKDKVRR 11 Unmodified _PKTVFKDKVRR_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.9241333007812 2 687.422428 1372.8303 1.5948 0.0010963 -2.9608 -0.0020354 -1.3661 -0.00093908 687.4204258212318 105.01 0.14172 98.833 98.749 98.891 -6.1757 17 11 2 0 0 0 0.69316 1 70296 70296 4.897 2.1618 1 62830000 46131 4971 30823 31565 54104 54104 0.15880096296473312 PKTVFKDKVRR 11 Unmodified _PKTVFKDKVRR_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MSMS AL20221201_MKP_PDAC_01 4 458.6160278320312 3 458.617377 1372.8303 NaN NaN NaN NaN NaN NaN NaN 105.04 1 98.86 98.36 99.36 -6.1757 0 0 0 0.94002 1 70331 70331 1.0136 0.38675 1 46132 4971 30823 31565 54105 54105 0.15880096296473312 PKVALKGP 8 Unmodified _PKVALKGP_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2667846679688 2 405.265813 808.517074 1.6902 0.00068497 0.14683 5.9505E-05 1.837 0.00074448 405.2657298573138 108.63 2.1982 102.45 101.32 103.51 -6.1757 557 412 2 0 0 0 0.80992 2 72176 72176;72285 0.69038 0 1 6824600 46133 9384 30824 31566 54106;54107 54106 0.1051559797366508 PKVELQISIY 10 Unmodified _PKVELQISIY_ 0 0 0 nc|ENSG00000144366|Q9UBP9-4|GULP1;ENSG00000144366|ENST00000409830|GULP1;nc|ENSG00000144366|Q9UBP9-2|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 nc|ENSG00000144366|Q9UBP9-4|GULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3450927734375 2 595.344989 1188.67542 0.044902 2.6732E-05 -0.18557 -0.00011048 -0.14067 -8.3746E-05 595.344876609542 37.745 0.16874 37.474 37.375 37.544 -0.27133 11 7 2 0 0 0 0.50362 1 19859 19859 16.149 3.9084 1 2885900 46134 5603 30825 31567 54108 54108 0.08863427371443322 PKVFPVVH 8 Unmodified _PKVFPVVH_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7802124023438 2 461.779088 921.543623 0.90166 0.00041637 0.46717 0.00021573 1.3688 0.0006321 461.77922487681997 57.57 0.23682 57.504 57.397 57.634 -0.066036 18 11 2 0 0 0 0.67481 1 31356 31356 19.439 13.679 1 1620400 46135 16480 30826 31568 54109 54109 0.07971286864994909 PKVGNVEY 8 Unmodified _PKVGNVEY_ 0 0 0 REV__ENST00000354870.5_1_8:22035226-22069238:+|nuORF;REV__nc|ENSG00000168487|P13497-6|BMP1 REV__nc|ENSG00000168487|P13497-6|BMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 905.473876953125 1 905.472709 904.465432 0.36182 0.00032762 0.54737 0.00049563 0.90919 0.00082325 905.4730892298264 47.461 0.35059 47.461 47.25 47.601 0 48 15 4 0 0 0 0.19792 2 25898 25898;25997 70.716 0 1 49663000 + 46136 22315;29770 30827 31569 54110;54111 54110 0.00937809489096253 PKVGQLTT 8 Unmodified _PKVGQLTT_ 0 0 0 REV__ENST00000461909.1_1_14:21936585-21943060:-|nuORF REV__ENST00000461909.1_1_14:21936585-21943060:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2519226074219 2 422.25036 842.486168 1.8501 0.00078121 -0.6678 -0.00028198 1.1823 0.00049923 422.24967122911175 104.63 0.078438 98.459 98.398 98.476 -6.1757 6 3 2 0 0 0 0.80722 1 70059 70059 2.3027 0 1 6258800 + 46137 27326 30828 31570 54112 54112 0.05862399868738066 PKVKRTAR 8 Unmodified _PKVKRTAR_ 0 0 0 ENST00000541244.1_1_12:123560352-123560463:-|nuORF ENST00000541244.1_1_12:123560352-123560463:-|nuORF ENST00000541244.1_1_12:123560352-123560463:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.3139343261719 2 478.311618 954.608683 NaN NaN NaN NaN NaN NaN NaN 108.72 1 102.54 102.04 103.04 -6.1757 0 0 0 0.97444 1 72646 72646 0.69038 0 1 46138 15043 30829 31571 54113 54113 0.12956281390847835 PKVLTTTAT 9 Unmodified _PKVLTTTAT_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2776489257812 2 466.276575 930.538597 1.533 0.00071481 -0.14568 -6.7926E-05 1.3873 0.00064688 466.276282478158 105.18 0.14096 99.007 98.918 99.059 -6.1757 67 31 3 0 0 0 0.59218 1 70420 70420 1.8442 0.19162 1 203880000 46139 3344 30830 31572 54114 54114 0.07054938211717854 PKVVNALI 8 Unmodified _PKVVNALI_ 0 0 0 REV__ENST00000469061.1_1_9:39139924-39140549:-|nuORF REV__ENST00000469061.1_1_9:39139924-39140549:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.5520629882812 1 853.550565 852.543289 1.4323 0.0012226 0.70077 0.00059814 2.1331 0.0018207 853.5509790223548 108.11 2.1454 101.94 100.83 102.97 -6.1757 571 382 2 0 0 0 0.80676 2 71751 71751;71961 2.5775 0 1 5654400 + 46140 27460 30831 31573 54115;54116 54115 0.11111867145143606 PKVYKTTGFW 10 Unmodified _PKVYKTTGFW_ 0 0 0 REV__ENSG00000100473|ENST00000396618|COCH REV__ENSG00000100473|ENST00000396618|COCH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5569458007812 3 409.557125 1225.64954 NaN NaN NaN NaN NaN NaN NaN 18.659 1 18.659 18.159 19.159 0 0 0 0 0.99897 1 9292 9292 0.77653 0 1 + 46141 18072 30832 31574 54117 54117 0.04574577919811418 PKWFHPLPFQ 10 Unmodified _PKWFHPLPFQ_ 0 0 0 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 ENSG00000132357|ENST00000254691|CARD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.2339477539062 3 432.901114 1295.68151 -0.62403 -0.00027015 -1.6166 -0.00069984 -2.2407 -0.00096999 433.23458864734283 27.998 0.21629 27.998 27.804 28.021 0 25 11 3 0 0 0 0.71276 1 14429 14429 0.62683 0.17231 1 3091700 46142 4397 30833 31575 54118 54118 0.04549990393593362 PKWKKKVAS 9 Unmodified _PKWKKKVAS_ 0 0 0 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 ENSG00000174529|ENST00000367167|TMEM81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3372192382812 2 536.337301 1070.66005 1.4858 0.00079691 -0.58011 -0.00031113 0.90574 0.00048578 536.3367753410233 106.58 0.081017 100.4 100.34 100.43 -6.1757 26 15 2 0 0 0 0.61381 1 71319 71319 0.52476 0 1 1427900 46143 8432 30834 31576 54119 54119 0.12754605364875715 PKWNWSNRF 9 Unmodified _PKWNWSNRF_ 0 0 0 REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF REV__ENST00000429642.1_3_10:1094327-1094705:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.21044921875 3 412.208718 1233.60433 NaN NaN NaN NaN NaN NaN NaN 47.996 1 42.762 42.262 43.262 -5.2339 0 0 0 0.81228 1 29853 29853 5.7319 0 1 + 46144 26952 30835 31577 54120 54120 -0.0031322782274401106 PKWRAKKKPKT 11 Unmodified _PKWRAKKKPKT_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.5405883789062 2 684.435338 1366.85612 NaN NaN NaN NaN NaN NaN NaN 98.386 1 98.358 97.858 98.858 -0.028282 0 0 0 0.94307 1 54647 54647 0.30703 0 1 + 46145 23975 30836 31578 54121 54121 0.18736990538764076 PKWTKMHFCF 10 Unmodified _PKWTKMHFCF_ 0 0 0 REV__ENSG00000196917|ENST00000432564|HCAR1 REV__ENSG00000196917|ENST00000432564|HCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2160339355469 3 442.215828 1323.62565 -0.23987 -0.00010608 1.4226 0.0006291 1.1827 0.00052302 442.2165802712442 25.595 0.16741 25.595 25.507 25.674 0 21 7 4 0 0 0 0.71123 1 13137 13137 0.69767 0.19171 1 945240 + 46146 23881 30837 31579 54122 54122 -0.02321302109885437 PKWTKMHFCF 10 Unmodified _PKWTKMHFCF_ 0 0 0 REV__ENSG00000196917|ENST00000432564|HCAR1 REV__ENSG00000196917|ENST00000432564|HCAR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 442.215828 1323.62565 -0.23987 -0.00010608 1.4226 0.0006291 1.1827 0.00052302 442.2165802712442 25.595 0.16741 25.595 25.507 25.674 0 0 0 NaN 0.69767 21 7 4 NaN NaN NaN NaN 0 NaN NaN 0 945240 + 46147 23881 30837 31579 -0.02321302109885437 PLAAFARY 8 Unmodified _PLAAFARY_ 0 0 0 REV__ENSG00000180900|ENST00000356994|SCRIB REV__ENSG00000180900|ENST00000356994|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7543334960938 2 454.75307 907.491587 1.328 0.00060392 -0.095717 -4.3528E-05 1.2323 0.0005604 454.752900216546 49.756 0.29731 49.707 49.568 49.865 -0.048828 44 14 4 0 0 0 0.76859 1 26976 26976 11.114 0.93107 1 12457000 + 46148 23172 30838 31580 54123 54123 0.03414123451227624 PLAAKIIKVK 10 Unmodified _PLAAKIIKVK_ 0 0 0 ENST00000564731.5_1_16:46761123-46772038:-|nuORF;nc|ENSG00000140795|Q32MK0-4|MYLK3;ENSG00000140795|ENST00000394809|MYLK3 ENST00000564731.5_1_16:46761123-46772038:-|nuORF ENST00000564731.5_1_16:46761123-46772038:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.9205932617188 3 360.921627 1079.74305 NaN NaN NaN NaN NaN NaN NaN 7.6076 1 5.1256 4.6256 5.6256 -2.482 0 0 0 1.0048 1 3839 3839 0.13989 0.13989 1 46149 5268 30839 31581 54124 54124 0.20636922092876375 PLAALARYI 9 Unmodified _PLAALARYI_ 0 0 0 REV__ENST00000347404.9_1_12:88974054-88974564:-|nuORF REV__ENST00000347404.9_1_12:88974054-88974564:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.3039855957031 2 494.302927 986.591301 NaN NaN NaN NaN NaN NaN NaN 86.747 1 80.572 80.072 81.072 -6.1757 0 0 0 0.026323 1 57189 57189 70.716 1.6106 1 + 46150 25766 30840 31582 54125 54125 0.09746941065179726 PLAALLFT 8 Unmodified _PLAALLFT_ 0 0 0 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 845.5143432617188 1 845.513117 844.50584 0.20462 0.00017301 0.50256 0.00042492 0.70718 0.00059793 845.5136435692915 74.433 0.33771 73.957 73.817 74.155 -0.47588 22 14 2 0 0 0 0.76859 1 40804 40804 11.114 0 1 1079100 + 46151 22286 30841 31583 54126 54126 0.07736775879516244 PLAATPIF 8 Unmodified _PLAATPIF_ 0 0 0 ENST00000447654.5_1_6:34212664-34212856:+|nuORF ENST00000447654.5_1_6:34212664-34212856:+|nuORF ENST00000447654.5_1_6:34212664-34212856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 829.4820556640625 1 829.481817 828.47454 0.50646 0.0004201 0.48573 0.0004029 0.99219 0.000823 829.4822102353854 74.193 0.42728 74.237 74.006 74.433 0.043976 27 18 2 0 0 0 0.16583 1 40877 40877 82.939 12.075 1 1321600 46152 13483 30842 31584 54127 54127 0.05344202845435575 PLADTLLTM 9 Unmodified _PLADTLLTM_ 0 0 0 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 REV__nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7655944824219 2 487.764986 973.515419 0.45055 0.00021976 0.24779 0.00012087 0.69835 0.00034063 487.76523838281 76.471 0.44008 70.295 70.201 70.641 -6.1757 38 23 2 0 0 0 0.03327 1 50009 50009 53.576 0 1 14997000 + 46153 19492 30843 31585 54128 54128 0.027601761027312932 PLAEADPFY 9 Unmodified _PLAEADPFY_ 0 0 0 ENSG00000187550|ENST00000413299|SBK2 ENSG00000187550|ENST00000413299|SBK2 ENSG00000187550|ENST00000413299|SBK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7814331054688 2 511.745108 1021.47566 0.28808 0.00014742 0.22756 0.00011645 0.51563 0.00026387 511.7452144150545 89.847 0.20095 89.346 89.291 89.492 -0.50171 13 10 2 0 0 0 0.20528 1 49158 49158 8.5933 0.68312 1 439030 46154 9565 30844 31586 54129 54129 -0.03421627576335595 PLAERNIL 8 Unmodified _PLAERNIL_ 0 0 0 REV__ENSG00000008311|ENST00000417368|AASS REV__ENSG00000008311|ENST00000417368|AASS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2772216796875 2 463.276909 924.539266 0.033982 1.5743E-05 0.91242 0.0004227 0.9464 0.00043845 463.277322495404 39.96 0.23402 39.663 39.548 39.782 -0.29716 18 10 2 0 0 0 0.66338 1 21131 21131 20.454 2.3073 1 1649900 + 46155 17023 30845 31587 54130 54130 0.07397777651419801 PLAGGLWS 8 Unmodified _PLAGGLWS_ 0 0 0 REV__ENST00000568689.5_1_16:733170-734340:-|nuORF REV__ENST00000568689.5_1_16:733170-734340:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2201538085938 2 400.718696 799.422839 0.99822 0.0004 -0.94885 -0.00038022 0.04937 1.9783E-05 400.7185328588222 48.681 0.30215 43.285 43.069 43.371 -5.3961 25 17 2 0 0 0 0.77907 1 30319 30319 10.183 0 1 17483000 + 46156 28950 30846 31588 54131 54131 0.015104591515068932 PLAGGLWS 8 Unmodified _PLAGGLWS_ 0 0 0 REV__ENST00000568689.5_1_16:733170-734340:-|nuORF REV__ENST00000568689.5_1_16:733170-734340:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 401.2201538085938 2 400.718696 799.422839 0.99822 0.0004 -0.94885 -0.00038022 0.04937 1.9783E-05 400.7185328588222 48.681 0.30215 43.285 43.069 43.371 -5.3961 25 17 2 0 0 0 8.7369 1 30319 30319 10.183 0 1 17483000 + 46157 28950 30846 31588 54132 54132 0.015104591515068932 PLAGPFTA 8 Unmodified _PLAGPFTA_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.21337890625 2 387.213246 772.41194 0.47685 0.00018464 -0.43887 -0.00016993 0.037979 1.4706E-05 387.2131164543262 88.282 0.39835 87.778 87.602 88 -0.50423 30 17 2 0 0 0 0.77907 1 48255 48255 10.183 0.83596 1 760230 + 46158 19129 30847 31589 54133 54133 0.016630567772267568 PLAGPVWTA 9 Unmodified _PLAGPVWTA_ 0 0 0 REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF REV__ENST00000379789.8_1_10:6274912-6275263:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2528991699219 2 456.252903 910.491253 0.29129 0.0001329 0.46113 0.00021039 0.75241 0.00034329 456.2530447052143 65.02 0.29901 64.536 64.317 64.616 -0.48428 21 13 2 0 0 0 0.37804 1 35423 35423 13.508 0.97634 1 748750 + 46159 26298 30848 31590 54134 54134 0.03242703731370966 PLAGPWLGE 9 Unmodified _PLAGPWLGE_ 0 0 0 ENST00000524048.1_1_7:27162808-27163667:+|nuORF;ENST00000521159.5_1_7:27162261-27164022:+|nuORF;ENST00000521687.5_1_7:27162261-27168026:+|nuORF;ENST00000517550.1_1_7:27161590-27163258:+|nuORF ENST00000524048.1_1_7:27162808-27163667:+|nuORF ENST00000524048.1_1_7:27162808-27163667:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2510681152344 2 470.25036 938.486168 0.49348 0.00023206 0.1358 6.3861E-05 0.62928 0.00029592 470.25036241609087 61.952 0.27026 61.465 61.345 61.615 -0.48764 22 12 2 0 0 0 0.46577 1 33746 33746 9.3474 0 1 2484900 46160 14679 30849 31591 54135 54135 0.01446399868757453 PLAGPWLGE 9 Unmodified _PLAGPWLGE_ 0 0 0 ENST00000524048.1_1_7:27162808-27163667:+|nuORF;ENST00000521159.5_1_7:27162261-27164022:+|nuORF;ENST00000521687.5_1_7:27162261-27168026:+|nuORF;ENST00000517550.1_1_7:27161590-27163258:+|nuORF ENST00000524048.1_1_7:27162808-27163667:+|nuORF ENST00000524048.1_1_7:27162808-27163667:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.25036 938.486168 0.17052 8.0189E-05 0.23511 0.00011056 0.40563 0.00019075 470.2508017597718 61.544 0.21505 61.512 61.435 61.65 -0.032787 0.02351 7.2272E-05 NaN 9.3474 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1682800 46161 14679 30849 31591 0.01446399868757453 PLAKLFEVI 9 Unmodified _PLAKLFEVI_ 0 0 0 REV__ENSG00000137760|ENST00000428149|ALKBH8 REV__ENSG00000137760|ENST00000428149|ALKBH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3204956054688 2 515.320786 1028.62702 0.63607 0.00032778 0.022646 1.167E-05 0.65871 0.00033945 515.3208044043008 73.237 0.206 73.237 73.149 73.355 0 14 10 2 0 0 0 0.49272 1 40778 40778 7.9102 0 1 954640 + 46162 20263 30850 31592 54136 54136 0.11384978522164602 PLALAGKP 8 Unmodified _PLALAGKP_ 0 0 0 nc|ENSG00000149743|Q86TN4-3|TRPT1 nc|ENSG00000149743|Q86TN4-3|TRPT1 nc|ENSG00000149743|Q86TN4-3|TRPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.7449951171875 2 383.744714 765.474875 -0.22094 -8.4786E-05 0.70064 0.00026887 0.47969 0.00018408 383.74482447941335 48.972 0.21526 48.972 48.808 49.023 0 18 10 2 0 0 0 0.80676 1 26914 26914 2.5775 0 1 2423200 46163 16262 30851 31593 54137 54137 0.08275622565281537 PLALCLLLQAY 11 Unmodified _PLALCLLLQAY_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9902648925781 3 406.570265 1216.68897 -0.13627 -5.5403E-05 0.53178 0.00021621 0.39551 0.0001608 406.5708122145154 18.927 0.10709 18.933 18.862 18.969 0.0060482 8 5 2 0 0 0 0.30303 1 9589 9589 5.4027 1.2861 1 695040 46164 5401 30852 31594 54138 54138 0.08928961879041708 PLALHLSL 8 Unmodified _PLALHLSL_ 0 0 0 nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;ENST00000311573.9_1_1:155649295-155658075:-|nuORF nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000163374|Q9H869-9|YY1AP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2712707519531 2 432.271096 862.527639 0.50683 0.00021909 0.71184 0.00030771 1.2187 0.0005268 432.2714262391521 45.39 0.3284 40.435 40.254 40.582 -4.9549 35 22 2 0 0 0 0.2655 1 27783 27783 59.795 0 1 20213000 46165 16326 30853 31595 54139 54139 0.09087580628101932 PLALQDRI 8 Unmodified _PLALQDRI_ 0 0 0 REV__ENSG00000101997|ENST00000376227|CCDC22 REV__ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.27734375 2 463.276909 924.539266 0.54518 0.00025257 0.41305 0.00019136 0.95823 0.00044392 463.2771096141233 44.857 0.47338 40.005 39.759 40.233 -4.852 91 36 3 0 0 0 0.48669 1 27567 27567 36.044 1.9418 1 73920000 + 46166 18212 30854 31596 54140 54140 0.07397777651419801 PLALTHLLF 9 Unmodified _PLALTHLLF_ 0 0 0 ENST00000424197.5_1_7:44283083-44294198:-|nuORF ENST00000424197.5_1_7:44283083-44294198:-|nuORF ENST00000424197.5_1_7:44283083-44294198:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3209838867188 2 512.813128 1023.6117 0.56141 0.0002879 0.15429 7.9121E-05 0.71569 0.00036702 512.8130178682749 73.85 0.6227 73.894 73.635 74.258 0.043983 131 28 6 0 0 0 0.46577 1 40686 40686 9.3474 0 1 179790000 46167 13142 30855 31597 54141 54141 0.10084111724995637 PLALVALAL 9 Unmodified _PLALVALAL_ 0 0 0 REV__nc|nan|Q9BPX7-2|C7orf25 REV__nc|nan|Q9BPX7-2|C7orf25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7974853515625 2 440.796946 879.57934 1.027 0.00045269 -0.28968 -0.00012769 0.73729 0.000325 440.79697763344006 101.44 0.13093 95.262 95.178 95.309 -6.1757 13 6 3 0 0 0 0.047696 1 68050 68050 45.75 0 1 55727000 + 46168 30052 30856 31598 54142 54142 0.13473324321967084 PLAMVLLLL 9 Unmodified _PLAMVLLLL_ 0 0 0 REV__ENSG00000177202|ENST00000321762|SPACA4 REV__ENSG00000177202|ENST00000321762|SPACA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.6382446289062 1 982.636937 981.629661 1.3836 0.0013596 -0.024755 -2.4325E-05 1.3588 0.0013352 982.6369309773711 102.9 0.064545 96.729 96.696 96.76 -6.1757 24 16 2 0 0 0 0.047696 1 69026 69026 45.75 9.2838 1 3181400 + 46169 22972 30857 31599 54143 54143 0.13811110655512948 PLAREESIFL 10 Unmodified _PLAREESIFL_ 0 0 0 REV__nc|ENSG00000103710|Q9NYN1-3|RASL12 REV__nc|ENSG00000103710|Q9NYN1-3|RASL12 MSMS AL20221201_MKP_PDAC_01 4 392.2227172851562 3 392.220401 1173.63937 NaN NaN NaN NaN NaN NaN NaN 48.267 1 43.033 42.533 43.533 -5.2339 0 0 0 0.91092 1 30051 30051 7.4771 0.37534 1 + 46170 18321 30858 31600 54144 54144 0.05949970194569687 PLARGSRV 8 Unmodified _PLARGSRV_ 0 0 0 ENST00000437972.1_2_3:48229548-48229873:-|nuORF;ENST00000302506.7_2_3:48229548-48229785:-|nuORF ENST00000437972.1_2_3:48229548-48229873:-|nuORF ENST00000437972.1_2_3:48229548-48229873:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.26220703125 2 428.261594 854.508634 1.0702 0.00045833 0.31718 0.00013584 1.3874 0.00059416 428.26165220460723 90.072 0.74923 83.896 83.526 84.275 -6.1757 130 42 4 0 0 0 0.80624 1 59683 59683 2.8892 0 1 223570000 46171 11581 30859 31601 54145 54145 0.07556044057048439 PLARRPRA 8 Unmodified _PLARRPRA_ 0 0 0 nc|ENSG00000133216|P29323|EPHB2;ENST00000374632.7_1_1:23240108-23240360:+|nuORF nc|ENSG00000133216|P29323|EPHB2 nc|ENSG00000133216|P29323|EPHB2 MSMS AL20221201_MKP_PDAC_01 4 468.7973327636719 2 468.796135 935.577717 NaN NaN NaN NaN NaN NaN NaN 106.99 1 100.81 100.31 101.31 -6.1757 0 0 0 0.97444 1 71586 71586 0.69038 0 1 46172 16197 30860 31602 54146 54146 0.10735128076601086 PLARRPRA 8 Unmodified _PLARRPRA_ 0 0 0 nc|ENSG00000133216|P29323|EPHB2;ENST00000374632.7_1_1:23240108-23240360:+|nuORF nc|ENSG00000133216|P29323|EPHB2 nc|ENSG00000133216|P29323|EPHB2 MSMS AL20221201_MKP_PDAC_01 4 468.7976989746094 2 468.796135 935.577717 NaN NaN NaN NaN NaN NaN NaN 108.31 1 102.14 101.64 102.64 -6.1757 0 0 0 0.97444 1 72397 72397 0.69038 0 1 46173 16197 30860 31602 54147 54147 0.10735128076601086 PLARSAWAL 9 Unmodified _PLARSAWAL_ 0 0 0 REV__ENST00000525219.6_1_10:6008176-6019856:-|nuORF REV__ENST00000525219.6_1_10:6008176-6019856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7842102050781 2 492.784902 983.55525 0.24739 0.00012191 -1.2047 -0.00059368 -0.95735 -0.00047177 492.7844504237691 72.502 0.32239 72.502 72.334 72.657 0 28 12 3 0 0 0 0.46577 1 40414 40414 9.3474 0 1 1143200 + 46174 28349 30861 31603 54148 54148 0.06281483888312778 PLARSAWAL 9 Unmodified _PLARSAWAL_ 0 0 0 REV__ENST00000525219.6_1_10:6008176-6019856:-|nuORF REV__ENST00000525219.6_1_10:6008176-6019856:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 492.784902 983.55525 0.24739 0.00012191 -1.2047 -0.00059368 -0.95735 -0.00047177 492.7844504237691 72.502 0.32239 72.502 72.334 72.657 0 0 0 NaN 9.3474 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1143200 + 46175 28349 30861 31603 0.06281483888312778 PLATGAAD 8 Unmodified _PLATGAAD_ 0 0 0 REV__ENSG00000204347|ENST00000375366|BTBD17 REV__ENSG00000204347|ENST00000375366|BTBD17 MSMS AL20221201_MKP_PDAC_01 4 358.1835327148438 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 97.621 1 91.445 90.945 91.945 -6.1757 0 0 0 0.47265 1 64691 64691 42.968 0 1 + 46176 24161 30862 31604 54149 54149 -0.013784104991486856 PLATLCSNL 9 Unmodified _PLATLCSNL_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5;nc|ENSG00000166750|Q08AF3-2|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2483825683594 2 466.249503 930.484453 0.65885 0.00030719 -3.3202 -0.001548 -2.6613 -0.0012408 466.2478131644072 68.491 0.26297 68.491 68.371 68.634 0 19 11 2 0 0 0 0.37804 1 38168 38168 13.508 0 1 439770 46177 7527 30863 31605 54150 54150 0.016430227884939086 PLATQARSGYT 11 Unmodified _PLATQARSGYT_ 0 0 0 REV__nc|ENSG00000292366|P51809-3|VAMP7 REV__nc|ENSG00000292366|P51809-3|VAMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8009643554688 2 582.80402 1163.59349 0.66727 0.00038889 -0.066566 -3.8795E-05 0.6007 0.00035009 582.8026204963728 74.614 0.43161 74.138 73.974 74.406 -0.47588 28 17 3 0 0 0 0.53952 1 40801 40801 14.405 5.0223 1 1858300 + 46178 19439 30864 31606 54151 54151 0.018233250123103062 PLATQARSGYT 11 Unmodified _PLATQARSGYT_ 0 0 0 REV__nc|ENSG00000292366|P51809-3|VAMP7 REV__nc|ENSG00000292366|P51809-3|VAMP7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 582.80402 1163.59349 0.66727 0.00038889 -0.066566 -3.8795E-05 0.6007 0.00035009 582.8026204963728 74.614 0.43161 74.138 73.974 74.406 -0.47588 0 0 NaN 14.405 28 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1858300 + 46179 19439 30864 31606 0.018233250123103062 PLAVLFGIF 9 Unmodified _PLAVLFGIF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000425141.5_1_2:220498093-220506447:+|nuORF;ENSG00000004939|ENST00000262418|SLC4A1;nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 977.593505859375 1 976.586616 975.57934 0.93888 0.0009169 0.5397 0.00052706 1.4786 0.001444 976.5873457150628 102.59 0.044701 96.41 96.373 96.418 -6.1757 8 6 2 0 0 0 0.3554 1 68836 68836 14.582 0 1 1888500 46180 7258;30165;3073;291 30865 31607 54152 54152 0.0905732432199784 PLAVMPLSRF 10 Unmodified _PLAVMPLSRF_ 0 0 0 ENST00000379619.5_1_2:28637264-28637390:+|nuORF ENST00000379619.5_1_2:28637264-28637390:+|nuORF ENST00000379619.5_1_2:28637264-28637390:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.2607421875 2 565.823169 1129.63179 0.55078 0.00031164 0.19649 0.00011118 0.74727 0.00042282 565.8233448789524 78.338 0.82592 72.162 71.754 72.58 -6.1757 86 49 2 0 0 0 0.21193 1 51480 51480 27.629 27.629 1 44099000 46181 12573 30866 31608 54153 54153 0.0721553939331443 PLAWPAWLL 9 Unmodified _PLAWPAWLL_ 0 0 0 ENSG00000180902|ENST00000321264|D2HGDH;ENST00000463932.1_1_2:242674639-242675412:+|nuORF;nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH ENSG00000180902|ENST00000321264|D2HGDH ENSG00000180902|ENST00000321264|D2HGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7711791992188 2 533.807845 1065.60114 0.13587 7.253E-05 -2.7152 -0.0014494 -2.5793 -0.0013769 533.8055752239934 33.893 0.26767 33.922 33.769 34.036 0.028934 25 11 3 0 0 0 0.46577 1 17791 17791 9.3474 2.0582 1 8950200 46182 8931 30867 31609 54154 54154 0.07096129070555435 PLCDIKGSY 9 Unmodified _PLCDIKGSY_ 0 0 0 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.1920776367188 2 498.24696 994.479368 0.92313 0.00045994 -0.30191 -0.00015042 0.62122 0.00030952 498.2468613106079 54.782 0.40382 48.917 48.746 49.15 -5.8653 36 24 3 0 0 0 0.16785 1 34666 34666 11.64 0 1 24058000 46183 2762 30868 31610 54155 54155 -0.018092810741109133 PLCEEQVIY 9 Unmodified _PLCEEQVIY_ 0 0 0 ENSG00000187609|ENST00000340951|EXD3;ENST00000478344.6_1_9:140240296-140248823:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF ENSG00000187609|ENST00000340951|EXD3 ENSG00000187609|ENST00000340951|EXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2954711914062 2 547.26535 1092.51615 0.49938 0.0002733 -0.13038 -7.1353E-05 0.369 0.00020194 547.2652623356969 45.796 0.9947 45.796 45.396 46.391 0 139 50 6 0 0 0 0.43463 1 24789 24789 10.824 2.2306 1 37206000 46184 9572 30869 31611 54156 54156 -0.026410292482069053 PLCFCCCSCW 10 Unmodified _PLCFCCCSCW_ 0 0 0 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 ENSG00000197651|ENST00000358859|CCER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.69287109375 2 582.693812 1163.37307 0.48163 0.00028065 0.21109 0.000123 0.69273 0.00040365 582.6932917618705 53.712 0.23129 53.712 53.566 53.797 0 16 10 2 0 0 0 0.70951 1 29797 29797 1.8442 0 1 1839500 46185 9987 30870 31612 54157 54157 -0.2020814249860905 PLCFWFVL 8 Unmodified _PLCFWFVL_ 0 0 0 REV__ENSG00000182035|ENST00000537425|ADIG REV__ENSG00000182035|ENST00000537425|ADIG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7691650390625 2 512.769874 1023.5252 NaN NaN NaN NaN NaN NaN NaN 61.571 1 61.571 61.071 62.071 0 0 0 0 0.94749 1 34328 34328 11.114 0.29054 1 + 46186 23236 30871 31613 54158 54158 0.014374088987665345 PLCKTLDQY 9 Unmodified _PLCKTLDQY_ 0 0 0 ENSG00000124721|ENST00000327475|DNAH8;nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 ENSG00000124721|ENST00000327475|DNAH8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.831787109375 2 540.773342 1079.53213 0.65102 0.00035205 -1.614 -0.00087281 -0.96299 -0.00052076 540.7726606959378 80.792 0.3361 80.85 80.703 81.039 0.057587 19 12 2 0 0 0 0.21473 1 44633 44633 4.3292 0 1 3296900 46187 3812 30872 31614 54159 54159 -0.004453230112858364 PLCLPPCH 8 Unmodified _PLCLPPCH_ 0 0 0 REV__nc|ENSG00000182257|Q9NV39|PRR34 REV__nc|ENSG00000182257|Q9NV39|PRR34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5497436523438 2 440.214409 878.414265 NaN NaN NaN NaN NaN NaN NaN 15.736 1 15.741 15.241 16.241 0.0057774 0 0 0 0.97444 1 7856 7856 0.79363 0 1 + 46188 29833 30873 31615 54160 54160 -0.02980554080966158 PLCMHSAL 8 Unmodified _PLCMHSAL_ 0 0 0 nc|ENSG00000163743|Q96PM5-8|RCHY1;nc|ENSG00000163743|Q96PM5-7|RCHY1;nc|ENSG00000163743|Q96PM5-2|RCHY1;ENSG00000163743|ENST00000324439|RCHY1;nc|ENSG00000163743|Q96PM5-6|RCHY1;ENST00000514589.5_1_4:76407750-76415940:-|nuORF;ENST00000512567.5_1_4:76407750-76419412:-|nuORF nc|ENSG00000163743|Q96PM5-8|RCHY1 nc|ENSG00000163743|Q96PM5-8|RCHY1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 436.575927734375 2 436.211866 870.40918 0.83258 0.00036318 -0.88749 -0.00038714 -0.054911 -2.3953E-05 436.2115796452703 35.497 0.29758 31.304 31.177 31.474 -4.1928 30 18 2 0 0 0 8.7369 1 20633 20633 28.173 8.8113 1 6336000 46189 7061 30874 31616 54161 54161 -0.031208579435769934 PLCPMLECI 9 Unmodified _PLCPMLECI_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3023986816406 2 509.742142 1017.46973 -0.053112 -2.7073E-05 -0.92855 -0.00047332 -0.98166 -0.0005004 509.7421060412759 70.416 0.085739 69.937 69.869 69.954 -0.47903 5 3 2 0 0 0 0.19613 1 38490 38490 12.532 6.1774 1 1324400 + 46190 21189 30875 31617 54162 54162 -0.03830508675514466 PLCPSRRAAR 10 Unmodified _PLCPSRRAAR_ 0 0 0 ENST00000368272.4_1_1:156212074-156212582:+|nuORF;ENST00000471413.1_1_1:156212316-156212582:+|nuORF ENST00000368272.4_1_1:156212074-156212582:+|nuORF ENST00000368272.4_1_1:156212074-156212582:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2137145996094 3 376.213586 1125.61893 -0.01584 -5.9593E-06 0.9012 0.00033905 0.88536 0.00033309 376.21379798922715 53.215 0.37969 53.152 53.044 53.423 -0.063423 43 18 3 0 0 0 0.71123 1 28835 28835 0.69767 0.42865 1 5588700 46191 12264 30876 31618 54163 54163 0.061145210537461026 PLCQHQEII 9 Unmodified _PLCQHQEII_ 0 0 0 ENST00000227495.10_1_11:126284088-126284223:+|nuORF ENST00000227495.10_1_11:126284088-126284223:+|nuORF ENST00000227495.10_1_11:126284088-126284223:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.283935546875 2 540.778959 1079.54336 0.36952 0.00019983 -2.0082 -0.001086 -1.6386 -0.00088614 540.7768316145479 45.439 0.83603 40.484 40.299 41.135 -4.9549 70 56 2 0 0 0 0.2001 1 28151 28151 23.148 3.7094 1 56236000 46192 11049 30877 31619 54164 54164 0.006774990828262162 PLCSCCRQSSL 11 Unmodified _PLCSCCRQSSL_ 0 0 0 REV__ENST00000453195.5_1_6:30166895-30168914:-|nuORF REV__ENST00000453195.5_1_6:30166895-30168914:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.297607421875 2 598.764668 1195.51478 -0.43647 -0.00026134 0.41037 0.00024571 -0.026098 -1.5627E-05 598.7652802989188 48.859 0.23715 48.859 48.695 48.932 0 15 10 2 0 0 0 0.30496 1 26768 26768 2.9952 0 1 1956700 + 46193 27229 30878 31620 54165 54165 -0.0751530988027298 PLCSVTLYQ 9 Unmodified _PLCSVTLYQ_ 0 0 0 REV__ENSG00000168282|ENST00000305386|MGAT2 REV__ENSG00000168282|ENST00000305386|MGAT2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2265014648438 2 512.26261 1022.51067 0.91935 0.00047095 1.4939 0.00076526 2.4132 0.0012362 512.2629215685794 55.592 0.29417 49.671 49.525 49.819 -5.9211 26 17 2 0 0 0 0.18118 1 35335 35335 4.3292 0 1 13761000 + 46194 22299 30879 31621 54166 54166 0.00031291959987811424 PLCVVPLVL 9 Unmodified _PLCVVPLVL_ 0 0 0 REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF REV__ENST00000496920.1_1_8:27238201-27253644:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7597045898438 2 476.798632 951.582711 0.75052 0.00035785 2.76 0.001316 3.5105 0.0016738 476.79999936347485 49.409 0.25735 49.017 48.861 49.119 -0.3923 19 12 3 0 0 0 0.17158 1 26517 26517 20.871 0 1 2942900 + 46195 27970 30880 31622 54167 54167 0.10498251104343126 PLCYTPPDSY 10 Unmodified _PLCYTPPDSY_ 0 0 0 REV__ENSG00000099331|ENST00000682292|MYO9B REV__ENSG00000099331|ENST00000682292|MYO9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.25634765625 2 578.254982 1154.49541 NaN NaN NaN NaN NaN NaN NaN 48.76 1 48.389 47.889 48.889 -0.37172 0 0 0 0.5926 1 26180 26180 21.747 4.8044 1 + 46196 17974 30881 31623 54168 54168 -0.07565619627871456 PLDDLEMDFKF 11 Unmodified _PLDDLEMDFKF_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3220825195312 2 685.320854 1368.62715 NaN NaN NaN NaN NaN NaN NaN 58.882 1 58.882 58.382 59.382 0 0 0 0 0.93933 1 32793 32793 2.9952 1.6657 1 + 46197 18005 30882 31624 54169 54169 -0.042414343308337266 PLDDLYGRY 9 Unmodified _PLDDLYGRY_ 0 0 0 ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM ENSG00000187790|ENST00000267430|FANCM ENSG00000187790|ENST00000267430|FANCM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2741088867188 2 556.274564 1110.53457 0.36893 0.00020523 -0.7432 -0.00041342 -0.37426 -0.00020819 556.2740926013701 66.414 0.31834 65.93 65.792 66.11 -0.48323 42 15 3 0 0 0 0.48152 1 36355 36355 8.5933 0.68312 1 3594300 46198 9595 30883 31625 54170 54170 -0.016271512820139833 PLDDQVALL 9 Unmodified _PLDDQVALL_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2756652832031 2 492.274032 982.533512 0.3349 0.00016486 -0.09113 -4.4861E-05 0.24377 0.00012 492.27398192639833 67.658 0.49734 67.658 67.437 67.934 0 53 23 3 0 0 0 0.1773 1 37660 37660 25.399 0 1 6986600 46199 7240;1908 30884 31626 54171 54171 0.041546343490949766 PLDDQVALL 9 Unmodified _PLDDQVALL_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;ENSG00000101076|ENST00000316673|HNF4A;nc|ENSG00000101076|P41235-2|HNF4A;ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235|HNF4A;nc|ENSG00000101076|P41235-4|HNF4A nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-7|HNF4A nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 983.54296875 1 983.540788 982.533512 0.23323 0.0002294 -0.60519 -0.00059523 -0.37195 -0.00036583 983.5401894816812 67.664 0.32452 67.664 67.505 67.829 0 23 15 2 0 0 0 0.07087 1 37670 37670 39.95 7.164 1 2529500 46200 7240;1908 30884 31626 54172 54172 0.041546343490949766 PLDEPASFTY 10 Unmodified _PLDEPASFTY_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2657470703125 2 570.266404 1138.51826 0.54451 0.00031052 -0.97344 -0.00055512 -0.42893 -0.0002446 570.2654647445228 74.665 0.26391 74.665 74.54 74.803 0 26 11 3 0 0 0 0.6606 1 41522 41522 7.2892 0.56607 1 1440200 + 46201 17769 30885 31627 54173 54173 -0.045462772387509176 PLDERHKPN 9 Unmodified _PLDERHKPN_ 0 0 0 REV__ENST00000506929.1_1_5:130727944-130729167:+|nuORF REV__ENST00000506929.1_1_5:130727944-130729167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7932739257812 2 553.291079 1104.56761 0.10381 5.7439E-05 2.5445 0.0014078 2.6483 0.0014653 553.2924677862305 71.438 0.28052 71.438 71.293 71.574 0 20 13 2 0 0 0 0.41742 1 39791 39791 11.64 0.81637 1 1332000 + 46202 28094 30886 31628 54174 54174 0.019504755607158586 PLDERIVF 8 Unmodified _PLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7766723632812 2 494.776742 987.538931 0.17832 8.8229E-05 -0.019339 -9.5686E-06 0.15898 7.866E-05 494.7764999953179 65.833 0.45837 65.833 65.572 66.03 0 34 22 2 0 0 0 0.14033 2 36750 36652;36750 88.954 46.859 1 7515500 46203 4865 30887 31629 54175;54176 54176 0.0446635793156247 PLDERIVF 8 Unmodified _PLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7771911621094 2 494.776742 987.538931 1.1641 0.00057597 -0.41217 -0.00020393 0.75192 0.00037203 494.7765462283536 71.301 0.59586 65.125 64.749 65.345 -6.1757 39 29 2 0 0 0 0.20424 1 46626 46626 69.105 4.8686 1 35659000 46204 4865 30887 31629 54177 54177 0.0446635793156247 PLDERIVF 8 Unmodified _PLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS AL20221201_MKP_PDAC_01 4 494.7771911621094 2 494.776742 987.538931 NaN NaN NaN NaN NaN NaN NaN 73.062 1 66.886 66.386 67.386 -6.1757 0 0 0 0.068755 1 47784 47784 99.799 39.409 1 46205 4865 30887 31629 54178 54178 0.0446635793156247 PLDFRHFTL 9 Unmodified _PLDFRHFTL_ 0 0 0 ENST00000490314.1_1_7:127285216-127291805:-|nuORF ENST00000490314.1_1_7:127285216-127291805:-|nuORF ENST00000490314.1_1_7:127285216-127291805:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 573.3088989257812 2 573.308741 1144.60293 NaN NaN NaN NaN NaN NaN NaN 82.93 1 76.754 76.254 77.254 -6.1757 0 0 0 0.36554 1 54503 54503 21.747 3.6117 1 46206 14255 30888 31630 54179 54179 0.036411380885283506 PLDGVLANP 9 Unmodified _PLDGVLANP_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 895.48876953125 1 895.488359 894.481082 0.41549 0.00037207 0.16489 0.00014765 0.58037 0.00051972 895.4884428881576 57.229 0.34862 57.229 56.998 57.346 0 37 15 3 0 0 0 0.0090948 2 31857 31757;31857 85.272 10.343 1 6087900 46207 2068 30889 31631 54180;54181 54181 0.029620960061379265 PLDHYLVNF 9 Unmodified _PLDHYLVNF_ 0 0 0 nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2 nc|ENSG00000121753|O60241-4|ADGRB2 nc|ENSG00000121753|O60241-4|ADGRB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2885131835938 2 559.287474 1116.5604 NaN NaN NaN NaN NaN NaN NaN 69.393 1 69.424 68.924 69.924 0.030914 0 0 0 0.46757 1 38142 38142 16.942 2.104 1 46208 3598 30890 31632 54182 54182 0.0067774296028346726 PLDKKKGFSM 10 Unmodified _PLDKKKGFSM_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.0499267578125 3 384.214482 1149.62162 0.31098 0.00011948 -0.10931 -4.1998E-05 0.20167 7.7483E-05 384.2144004763931 39.022 0.25501 39.022 38.88 39.135 0 16 11 2 0 0 0 0.23896 1 20813 20813 1.7423 0.67081 1 2155100 46209 636 30891 31633 54183 54183 0.05278931668067344 PLDKTDVTTPI 11 Unmodified _PLDKTDVTTPI_ 0 0 0 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3301391601562 2 600.329536 1198.64452 -0.096067 -5.7672E-05 0.77737 0.00046668 0.6813 0.00040901 600.3303255992267 32.845 0.30549 28.989 28.776 29.081 -3.8562 33 16 3 0 0 0 0.14513 1 18714 18714 53.404 11.448 1 11682000 + 46210 18805 30892 31634 54184 54184 0.05314229266514303 PLDKTDVTTPI 11 Unmodified _PLDKTDVTTPI_ 0 0 0 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 600.329536 1198.64452 -0.067743 -4.0668E-05 1.5023 0.00090189 1.4346 0.00086122 600.8321633002283 29.174 0.19505 29.204 29.079 29.274 0.030104 0.10759 0.0006592 NaN 53.404 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1530700 + 46211 18805 30892 31634 0.05314229266514303 PLDKTDVTTPI 11 Unmodified _PLDKTDVTTPI_ 0 0 0 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 REV__nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 600.329536 1198.64452 -0.096067 -5.7672E-05 0.77737 0.00046668 0.6813 0.00040901 600.3303255992267 32.845 0.30549 28.989 28.776 29.081 -3.8562 -0.10759 -0.00021122 NaN 53.404 33 16 3 NaN NaN NaN NaN 0 NaN NaN 0 11682000 + 46212 18805 30892 31634 0.05314229266514303 PLDLVRARM 9 Unmodified _PLDLVRARM_ 0 0 0 ENST00000594070.5_1_19:19206777-19217195:+|nuORF;ENSG00000181035|ENST00000318596|SLC25A42 ENST00000594070.5_1_19:19206777-19217195:+|nuORF ENST00000594070.5_1_19:19206777-19217195:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.771484375 2 535.810593 1069.60663 1.5024 0.00080498 -0.72795 -0.00039004 0.77441 0.00041494 535.8099657562342 100.93 0.06237 94.757 94.717 94.78 -6.1757 5 3 2 0 0 0 0.19613 1 67610 67610 7.9102 2.6795 1 4959100 46213 8945 30893 31635 54185 54185 0.07461484590703549 PLDLVRRYF 9 Unmodified _PLDLVRRYF_ 0 0 0 ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4 ENSG00000151572|ENST00000392977|ANO4 ENSG00000151572|ENST00000392977|ANO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2305908203125 3 393.560869 1177.66078 -0.022442 -8.8323E-06 0.58317 0.00022951 0.56073 0.00022068 393.5611343257571 19.362 0.24891 19.37 19.28 19.529 0.0078487 25 14 2 0 0 0 0.58466 1 9844 9844 1.1933 0.12188 1 1287300 46214 6124 30894 31636 54186 54186 0.07905400013919461 PLDMQILI 8 Unmodified _PLDMQILI_ 0 0 0 REV__ENSG00000185313|ENST00000449082|SCN10A REV__ENSG00000185313|ENST00000449082|SCN10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2679748535156 2 471.770071 941.52559 0.32652 0.00015404 1.6405 0.00077396 1.9671 0.000928 471.7705388898917 63.076 0.16084 63.076 62.985 63.146 0 10 6 2 0 0 0 8.7369 1 35171 35171 5.7604 0 1 559980 + 46215 23493 30895 31637 54187 54187 0.05248783827983061 PLDPARYET 9 Unmodified _PLDPARYET_ 0 0 0 ENST00000513178.1_1_4:47954638-48018683:-|nuORF ENST00000513178.1_1_4:47954638-48018683:-|nuORF ENST00000513178.1_1_4:47954638-48018683:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.267333984375 2 531.266739 1060.51892 0.4199 0.00022308 1.326 0.00070444 1.7459 0.00092752 531.2675239981185 31.391 0.42869 31.391 31.132 31.561 0 49 20 3 0 0 0 0.5029 1 16339 16339 7.2892 1.5574 1 5875000 46216 14634 30896 31638 54188 54188 -0.008914377990549838 PLDRKLIL 8 Unmodified _PLDRKLIL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.3184814453125 2 484.318577 966.622602 0.1159 5.6133E-05 -0.44764 -0.0002168 -0.33174 -0.00016067 484.3185768862969 35.259 0.27235 35.286 35.143 35.415 0.027401 17 12 2 0 0 0 0.1875 1 18610 18610 74.929 13.572 1 1603000 46217 7097 30897 31639 54189 54189 0.13795514099274442 PLDRKLIL 8 Unmodified _PLDRKLIL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.78564453125 2 484.318577 966.622602 0.94413 0.00045726 -0.31951 -0.00015474 0.62462 0.00030251 484.3185832907147 39.214 0.29741 34.763 34.632 34.929 -4.4509 28 18 2 0 0 0 8.7369 1 23285 23285 47.749 11.622 1 7490500 46218 7097 30897 31639 54190 54190 0.13795514099274442 PLDSAHTLL 9 Unmodified _PLDSAHTLL_ 0 0 0 ENST00000473343.5_1_1:6521496-6523040:-|nuORF;nc|ENSG00000215788|Q93038-8|TNFRSF25;nc|ENSG00000215788|Q93038-9|TNFRSF25;nc|ENSG00000215788|Q93038-10|TNFRSF25;ENSG00000215788|ENST00000356876|TNFRSF25;nc|ENSG00000215788|Q93038-2|TNFRSF25;nc|ENSG00000215788|Q93038-11|TNFRSF25 ENST00000473343.5_1_1:6521496-6523040:-|nuORF ENST00000473343.5_1_1:6521496-6523040:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2684936523438 2 483.766374 965.518196 0.65536 0.00031704 0.45966 0.00022237 1.115 0.00053941 483.7665854503126 57.26 0.39671 57.26 56.974 57.371 0 36 17 3 0 0 0 0.045537 1 31804 31804 46.921 2.5139 1 9908900 46219 10537 30898 31640 54191 54191 0.03405767551907957 PLDSNLGP 8 Unmodified _PLDSNLGP_ 0 0 0 REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.4155883789062 1 812.414859 811.407583 0.028021 2.2765E-05 0.44368 0.00036046 0.47171 0.00038322 812.4151582278354 61.443 0.38653 61.443 61.254 61.641 0 38 17 3 0 0 0 0.31612 2 34310 34210;34310 53.576 9.7173 1 4346900 + 46220 27947 30899 31641 54192;54193 54193 -0.005664524363169221 PLDSNWLAA 9 Unmodified _PLDSNWLAA_ 0 0 0 ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS ENSG00000164654|ENST00000340080|MIOS ENSG00000164654|ENST00000340080|MIOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2442932128906 2 493.750724 985.486896 -0.5484 -0.00027077 -0.94887 -0.0004685 -1.4973 -0.00073928 493.7506971371856 34.375 0.62061 34.375 34.207 34.827 0 105 31 5 0 0 0 0.39863 1 18237 18237 12.532 0.89125 1 235380000 46221 7223 30900 31642 54194 54194 -0.006428054821981277 PLDSSYFPI 9 Unmodified _PLDSSYFPI_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7609252929688 2 519.760758 1037.50696 0.36219 0.00018825 0.34927 0.00018153 0.71146 0.00036979 519.7609139188352 89.11 0.36919 89.11 88.936 89.306 0 27 17 2 0 0 0 0.5029 1 49327 49327 7.2892 4.9865 1 725050 + 46222 17289 30901 31643 54195 54195 -0.010290545422321884 PLDVLLTSGF 10 Unmodified _PLDVLLTSGF_ 0 0 0 ENSG00000196267|ENST00000682614|ZNF836 ENSG00000196267|ENST00000682614|ZNF836 ENSG00000196267|ENST00000682614|ZNF836 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.297119140625 2 531.297507 1060.58046 0.34699 0.00018435 0.46828 0.0002488 0.81527 0.00043315 531.2976683659597 86.783 0.36174 86.783 86.613 86.975 0 45 20 3 0 0 0 0.69377 1 48014 48014 3.5965 1.2938 1 1669300 46223 9791 30902 31644 54196 54196 0.05259493900257439 PLDYEDQVTY 10 Unmodified _PLDYEDQVTY_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.2808227539062 2 621.779876 1241.5452 -0.13756 -8.5535E-05 -0.15803 -9.8258E-05 -0.29559 -0.00018379 621.779676403663 60.687 0.28253 60.198 60.03 60.313 -0.48932 21 13 2 0 0 0 0.66569 1 32995 32995 6.7232 0.99131 1 2163000 46224 385 30903 31645 54197 54197 -0.06591213418232655 PLDYRWPMRYD 11 Unmodified _PLDYRWPMRYD_ 0 0 0 ENSG00000126107|ENST00000372172|HECTD3;nc|ENSG00000126107|Q5T447-2|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 ENSG00000126107|ENST00000372172|HECTD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.3621826171875 2 756.358636 1510.70272 NaN NaN NaN NaN NaN NaN NaN 92.377 1 92.377 91.877 92.877 0 0 0 0 0.93893 1 51081 51081 3.2813 1.7994 1 46225 3928 30904 31646 54198 54198 -0.032204123598603474 PLEAEPPPGP 10 Unmodified _PLEAEPPPGP_ 0 0 0 ENST00000568064.5_1_16:89804366-89804651:+|nuORF;ENST00000569901.1_1_16:89804185-89804651:+|nuORF;ENST00000564004.5_1_16:89799827-89804651:+|nuORF;ENST00000561536.5_1_16:89789452-89804651:+|nuORF;nc|ENSG00000158805|Q8N554-2|ZNF276;ENSG00000158805|ENST00000443381|ZNF276 ENST00000568064.5_1_16:89804366-89804651:+|nuORF ENST00000568064.5_1_16:89804366-89804651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2586059570312 2 502.258382 1002.50221 0.39336 0.00019757 0.11961 6.0078E-05 0.51298 0.00025765 502.25834326366976 37.401 0.55038 37.401 37.018 37.569 0 55 28 3 0 0 0 0.2178 2 19839 19839;19965 32.305 3.2239 1 30179000 46226 6610 30905 31647 54199;54200 54199 0.0010606131500026095 PLEAQLDAF 9 Unmodified _PLEAQLDAF_ 0 0 0 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2592163085938 2 502.258382 1002.50221 0.29098 0.00014615 1.0548 0.00052979 1.3458 0.00067594 502.2587913256187 82.188 0.47556 81.693 81.443 81.919 -0.4952 38 18 3 0 0 0 0.46577 1 44952 44952 9.3474 0 1 1454700 46227 2510 30906 31648 54201 54201 0.0010606131498889226 PLEARAAN 8 Unmodified _PLEARAAN_ 0 0 0 ENST00000571572.2_1_17:6353382-6353613:+|nuORF ENST00000571572.2_1_17:6353382-6353613:+|nuORF ENST00000571572.2_1_17:6353382-6353613:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 421.2296752929688 2 421.229959 840.445365 NaN NaN NaN NaN NaN NaN NaN 49.522 1 44.126 43.626 44.626 -5.3961 0 0 0 0.90769 1 30948 30948 18.135 0 1 46228 15487 30907 31649 54202 54202 0.018760585491349957 PLEASSTRAR 10 Unmodified _PLEASSTRAR_ 0 0 0 ENST00000589669.1_1_19:13872231-13873207:+|nuORF ENST00000589669.1_1_19:13872231-13873207:+|nuORF ENST00000589669.1_1_19:13872231-13873207:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2745361328125 2 544.296362 1086.57817 -0.051205 -2.7871E-05 0.27141 0.00014773 0.2202 0.00011986 544.2966814833798 39.991 0.23402 39.694 39.548 39.782 -0.29716 21 10 3 0 0 0 0.23634 1 21057 21057 6.7232 1.9672 1 2447100 46229 15675 30908 31650 54203 54203 0.038344582151466966 PLEDAGDLIF 10 Unmodified _PLEDAGDLIF_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2716064453125 2 545.276772 1088.53899 -0.010754 -5.864E-06 0.15681 8.5502E-05 0.14605 7.9638E-05 545.2762801460052 70.505 0.53273 70.505 70.28 70.812 0 68 33 4 0 0 0 0.69064 1 39389 39389 3.9444 1.0552 1 12328000 + 46230 22824 30909 31651 54204 54204 -0.0017368685910241766 PLEDGSFRVF 10 Unmodified _PLEDGSFRVF_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7942504882812 2 583.795663 1165.57677 0.34926 0.0002039 -0.17143 -0.00010008 0.17783 0.00010382 583.794149999816 70.943 0.25771 70.465 70.331 70.589 -0.47736 26 11 3 0 0 0 0.66569 1 38884 38884 6.7232 0.51738 1 699360 46231 6255 30910 31652 54205 54205 0.0006082412637624657 PLEDKEDL 8 Unmodified _PLEDKEDL_ 0 0 0 ENST00000379349.5_1_X:23693192-23697319:+|nuORF ENST00000379349.5_1_X:23693192-23697319:+|nuORF ENST00000379349.5_1_X:23693192-23697319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.4776000976562 1 958.472768 957.465492 0.62791 0.00060184 -2.3506 -0.002253 -1.7227 -0.0016512 958.4705390815681 46.166 0.37373 46.166 45.939 46.313 0 31 17 3 0 0 0 0.75262 1 25203 25203 12.532 0 1 5142300 46232 12565 30911 31653 54206 54206 -0.014942353015612753 PLEEAYRF 8 Unmodified _PLEEAYRF_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4;ENST00000569223.1_1_15:42235208-42264692:-|nuORF ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.27978515625 2 512.758549 1023.50255 0.26953 0.0001382 -1.7349 -0.00088956 -1.4653 -0.00075136 512.7577154658841 61.921 0.3494 61.434 61.243 61.592 -0.48764 24 16 2 0 0 0 8.7369 1 33804 33804 20.454 3.3407 1 792450 46233 2167 30912 31654 54207 54207 -0.008265189651410765 PLEEEGPGL 9 Unmodified _PLEEEGPGL_ 0 0 0 REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF REV__ENST00000394467.3_1_X:124461034-124461598:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7525329589844 2 470.73474 939.454927 NaN NaN NaN NaN NaN NaN NaN 46.239 1 46.239 45.739 46.739 0 0 0 0 0.70111 1 25262 25262 9.3474 0 1 + 46234 26448 30913 31655 54208 54208 -0.01722217955978067 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7695922851562 2 545.769448 1089.52434 0.3516 0.00019189 0.80916 0.00044161 1.1608 0.00063351 545.7696586333338 46.752 0.18767 46.752 46.631 46.819 0 13 8 2 0 0 0 0.11159 1 25548 25548 96.285 32.048 1 5632700 46235 551;2694 30914 31656 54209 54209 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1828918457031 3 364.182058 1089.52434 0.18935 6.8957E-05 1.1112 0.00040468 1.3005 0.00047363 364.18244856939776 46.709 0.19195 46.709 46.607 46.799 0 15 8 2 0 0 0 0.28079 1 25560 25560 65.235 23.395 1 2336200 46236 551;2694 30914 31656 54210 54210 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.1824035644531 3 364.182058 1089.52434 0.63715 0.00023204 -0.10818 -3.9396E-05 0.52897 0.00019264 364.1820555308816 47.005 0.2906 46.668 46.503 46.794 -0.33664 23 14 2 0 0 0 0.14054 1 25169 25169 75.761 45.92 1 9171200 46237 551;2694 30914 31656 54211 54211 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7701416015625 2 545.769448 1089.52434 NaN NaN NaN NaN NaN NaN NaN 46.975 1 46.638 46.138 47.138 -0.33664 0 0 0 0.041202 1 25166 25166 103.75 35.668 1 46238 551;2694 30914 31656 54212 54212 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7694702148438 2 545.769448 1089.52434 0.3551 0.0001938 0.10393 5.6722E-05 0.45903 0.00025053 545.7695819813465 52.03 0.34803 46.295 46.121 46.469 -5.7345 39 23 2 0 0 0 0.055179 2 32729 32729;32873 136.33 72.097 1 77492000 46239 551;2694 30914 31656 54213;54214 54213 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 364.1827087402344 3 364.182058 1089.52434 NaN NaN NaN NaN NaN NaN NaN 51.983 1 46.249 45.749 46.749 -5.7345 0 0 0 0.26177 1 32773 32773 57.722 26.454 1 46240 551;2694 30914 31656 54215 54215 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MSMS AL20221201_MKP_PDAC_01 4 364.1830444335938 3 364.182058 1089.52434 NaN NaN NaN NaN NaN NaN NaN 52.207 1 46.473 45.973 46.973 -5.7345 0 0 0 0.54148 1 32945 32945 31.268 13.122 1 46241 551;2694 30914 31656 54216 54216 -0.01683714216574117 PLEEHYRF 8 Unmodified _PLEEHYRF_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2;ENSG00000110047|ENST00000320631|EHD1 ENSG00000024422|ENST00000263277|EHD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 545.769448 1089.52434 1.3595 0.00074198 -0.11116 -6.0669E-05 1.2483 0.00068131 545.7690352560129 46.74 0.20174 46.707 46.572 46.774 -0.033417 -0.022547 -0.00033999 NaN 96.285 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1546800 46242 551;2694 30914 31656 -0.01683714216574117 PLEEIITYY 9 Unmodified _PLEEIITYY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3019409179688 2 570.794798 1139.57504 0.35119 0.00020046 1.1575 0.00066067 1.5087 0.00086113 570.7949439337156 76.258 0.53259 76.258 75.936 76.468 0 63 22 4 0 0 0 0.30562 1 42280 42280 16.942 11.182 1 12586000 46243 5917 30915 31657 54217 54217 0.010837703177458025 PLEELQLLN 9 Unmodified _PLEELQLLN_ 0 0 0 REV__ENSG00000179094|ENST00000317276|PER1 REV__ENSG00000179094|ENST00000317276|PER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1069.585693359375 1 1068.59355 1067.58628 -0.522 -0.0005578 -3.642 -0.0038918 -4.164 -0.0044496 1068.5936872689717 65.236 0.27741 65.236 65.093 65.37 0 19 10 2 0 0 0 0.5029 1 36411 36411 7.2892 0.56607 1 867690 + 46244 23085 30916 31658 54218 54218 0.05518592411931422 PLEGTFPCDF 10 Unmodified _PLEGTFPCDF_ 0 0 0 ENSG00000133116|ENST00000380099|KL;nc|ENSG00000133116|Q9UEF7-2|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2515869140625 2 563.2497 1124.48485 0.28977 0.00016321 1.578 0.00088882 1.8678 0.001052 563.2506721347911 69.715 0.18489 69.715 69.654 69.839 0 11 8 2 0 0 0 0.69064 1 38849 38849 3.9444 1.6417 1 453470 46245 4491 30917 31659 54219 54219 -0.07241602282306303 PLEHLHFIGSA 11 Unmodified _PLEHLHFIGSA_ 0 0 0 REV__ENSG00000241945|ENST00000291576|PWP2 REV__ENSG00000241945|ENST00000291576|PWP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8847351074219 3 407.552262 1219.63496 0.44684 0.00018211 0.88832 0.00036204 1.3352 0.00054415 407.55344065016084 30.816 0.4998 30.713 30.392 30.891 -0.10269 48 19 4 0 0 0 0.73114 1 15940 15940 1.3296 0.87513 1 5223400 + 46246 24455 30918 31660 54220 54220 0.033925057716714946 PLEILQLDF 9 Unmodified _PLEILQLDF_ 0 0 0 ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3051147460938 2 544.305332 1086.59611 NaN NaN NaN NaN NaN NaN NaN 87.978 1 88.032 87.532 88.532 0.053352 0 0 0 0.6032 1 48935 48935 12.532 0.89125 1 46247 8963 30919 31661 54221 54221 0.05627780417262329 PLEKRCLEL 9 Unmodified _PLEKRCLEL_ 0 0 0 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 MSMS AL20221201_MKP_PDAC_01 4 550.8097534179688 2 550.810259 1099.60597 NaN NaN NaN NaN NaN NaN NaN 46.713 1 41.633 41.133 42.133 -5.0805 0 0 0 0.53226 1 28907 28907 14.838 0 1 + 46248 20689 30920 31662 54222 54222 0.06014645151003606 PLELDFRTIYL 11 Unmodified _PLELDFRTIYL_ 0 0 0 REV__ENST00000485925.5_1_9:136279761-136305516:+|nuORF REV__ENST00000485925.5_1_9:136279761-136305516:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.27392578125 3 460.590494 1378.74965 0.17525 8.0718E-05 0.30031 0.00013832 0.47556 0.00021904 460.5906346548939 68.678 0.8019 68.198 67.825 68.627 -0.48071 89 35 3 0 0 0 0.72952 1 37401 37401 0.50596 0.50596 1 2671000 + 46249 21538 30921 31663 54223 54223 0.07542770462964654 PLELDTDGIWC 11 Unmodified _PLELDTDGIWC_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.1978149414062 3 421.197156 1260.56964 0.62496 0.00026323 0.79007 0.00033278 1.415 0.00059601 421.1974933275838 82.352 0.29207 81.857 81.674 81.966 -0.4952 17 11 2 0 0 0 0.67922 1 45079 45079 2.8433 0 1 689140 46250 8655 30922 31664 54224 54224 -0.050222765363514554 PLELLLLLLF 10 Unmodified _PLELLLLLLF_ 0 0 0 ENST00000434027.2_1_5:98106159-98115843:+|nuORF;ENSG00000174136|ENST00000513185|RGMB ENST00000434027.2_1_5:98106159-98115843:+|nuORF ENST00000434027.2_1_5:98106159-98115843:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3908081054688 2 592.388668 1182.76278 NaN NaN NaN NaN NaN NaN NaN 71.876 1 71.4 70.9 71.9 -0.47609 0 0 0 1.0019 1 39335 39335 0.45834 0 1 46251 8393 30923 31665 54225 54225 0.17871253312978297 PLEMFSNVEF 10 Unmodified _PLEMFSNVEF_ 0 0 0 ENSG00000176208|ENST00000321990|ATAD5;nc|ENSG00000176208|Q96QE3-2|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.78515625 2 606.783907 1211.55326 0.50751 0.00030795 -2.7226 -0.001652 -2.215 -0.0013441 606.7841936635017 83.62 0.33033 83.123 82.938 83.268 -0.49751 29 13 3 0 0 0 0.68719 1 45771 45771 4.3292 0.38484 1 671460 46252 8575 30924 31666 54226 54226 -0.04405357702466972 PLENNYNINF 10 Unmodified _PLENNYNINF_ 0 0 0 REV__ENSG00000113272|ENST00000231198|THG1L REV__ENSG00000113272|ENST00000231198|THG1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.797119140625 2 619.296027 1236.5775 0.12584 7.7935E-05 0.02896 1.7935E-05 0.1548 9.5869E-05 619.2962100010974 69.249 0.29517 68.769 68.604 68.899 -0.48071 20 12 2 0 0 0 0.69064 1 37857 37857 3.9444 0 1 924350 + 46253 18858 30925 31667 54227 54227 -0.0313238122457733 PLENNYNINF 10 Unmodified _PLENNYNINF_ 0 0 0 REV__ENSG00000113272|ENST00000231198|THG1L REV__ENSG00000113272|ENST00000231198|THG1L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 619.296027 1236.5775 0.12584 7.7935E-05 0.02896 1.7935E-05 0.1548 9.5869E-05 619.2962100010974 69.249 0.29517 68.769 68.604 68.899 -0.48071 0 0 NaN 3.9444 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 924350 + 46254 18858 30925 31667 -0.0313238122457733 PLENPVLLDRF 11 Unmodified _PLENPVLLDRF_ 0 0 0 nc|ENSG00000274736|P55773|CCL23 nc|ENSG00000274736|P55773|CCL23 nc|ENSG00000274736|P55773|CCL23 MSMS AL20221201_MKP_PDAC_01 4 437.9134216308594 3 438.246839 1311.71869 NaN NaN NaN NaN NaN NaN NaN 95.448 1 89.272 88.772 89.772 -6.1757 0 0 0 0.91362 1 63221 63221 6.6235 0 1 46255 16603 30926 31668 54228 54228 0.07529617148702528 PLEPYLPEPA 10 Unmodified _PLEPYLPEPA_ 0 0 0 ENSG00000156150|ENST00000647563|ALX3 ENSG00000156150|ENST00000647563|ALX3 ENSG00000156150|ENST00000647563|ALX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2954711914062 2 563.294965 1124.57538 0.54214 0.00030539 -0.28496 -0.00016051 0.25719 0.00014487 563.2947038695419 96.91 0.2403 96.605 96.516 96.756 -0.30473 26 15 2 0 0 0 0.69377 1 52906 52906 3.5965 0 1 393500 46256 6434 30927 31669 54229 54229 0.018071900376071426 PLEQGQVLL 9 Unmodified _PLEQGQVLL_ 0 0 0 REV__nc|ENSG00000177731|Q13045-2|FLII REV__nc|ENSG00000177731|Q13045-2|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2904663085938 2 498.78985 995.565146 -0.10823 -5.3985E-05 0.71775 0.00035801 0.60952 0.00030402 498.7901808488273 69.364 0.67294 68.885 68.53 69.203 -0.47903 107 28 5 0 0 0 0.46577 1 38046 38046 9.3474 0 1 95211000 + 46257 23002 30928 31670 54230 54230 0.0671862710306641 PLEQVPSPL 9 Unmodified _PLEQVPSPL_ 0 0 0 nc|ENSG00000119715|O95718-2|ESRRB nc|ENSG00000119715|O95718-2|ESRRB nc|ENSG00000119715|O95718-2|ESRRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2759399414062 2 490.276575 978.538597 0.87877 0.00043084 -0.56278 -0.00027592 0.31599 0.00015492 490.27630174575955 74.478 0.3177 74.002 73.864 74.182 -0.47588 23 13 2 0 0 0 0.48152 1 40813 40813 8.5933 0 1 749700 46258 16154 30929 31671 54231 54231 0.04846938211710494 PLEQWLIL 8 Unmodified _PLEQWLIL_ 0 0 0 REV__ENST00000486029.1_1_X:18694175-18709044:+|nuORF REV__ENST00000486029.1_1_X:18694175-18709044:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2991638183594 2 506.29731 1010.58007 1.0724 0.00054295 1.4104 0.00071406 2.4828 0.001257 506.2984816626866 94.593 1.3326 88.417 87.898 89.23 -6.1757 230 76 4 0 0 0 0.5284 1 62401 62401 32.117 0 1 133550000 + 46259 27792 30930 31672 54232 54232 0.0752011897105831 PLEREESI 8 Unmodified _PLEREESI_ 0 0 0 REV__ENSG00000125998|ENST00000374408|FAM83C REV__ENSG00000125998|ENST00000374408|FAM83C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7245788574219 2 486.753464 971.492375 0.36658 0.00017844 2.0584 0.0010019 2.425 0.0011804 486.7543893500872 58.203 0.23711 58.203 58.103 58.34 0 14 8 2 0 0 0 8.7369 1 32453 32453 15.768 0 1 1013500 + 46260 19534 30931 31673 54233 54233 0.005488733096171927 PLESATAL 8 Unmodified _PLESATAL_ 0 0 0 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2269287109375 2 401.221268 800.427984 1.0842 0.000435 3.8226 0.0015337 4.9067 0.0019687 401.22281397545004 46.871 0.40421 46.838 46.572 46.976 -0.033417 35 19 3 0 0 0 0.77907 1 25143 25143 10.183 0 1 7288100 46261 10108 30932 31674 54234 54234 0.019787182234722422 PLESATAL 8 Unmodified _PLESATAL_ 0 0 0 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 401.221268 800.427984 0.1108 4.4455E-05 4.0765 0.0016356 4.1873 0.00168 401.2228754182617 47.203 0.30066 47.203 47.062 47.362 0 0.18244 2.2088E-05 NaN 10.183 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3515700 46262 10108 30932 31674 0.019787182234722422 PLESSLVVGV 10 Unmodified _PLESSLVVGV_ 0 0 0 REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2892761230469 2 500.289682 998.564812 0.36609 0.00018315 0.51446 0.00025738 0.88055 0.00044053 500.28982882537764 81.354 0.49077 81.354 81.102 81.593 0 44 22 3 0 0 0 0.66569 1 45082 45082 6.7232 1.4925 1 949460 + 46263 19906 30933 31675 54235 54235 0.06547207383209752 PLESTGHL 8 Unmodified _PLESTGHL_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4423828125 1 853.441409 852.434132 0.28463 0.00024292 -0.18783 -0.00016031 0.096797 8.2611E-05 853.4411759400689 53.152 0.20456 53.152 53.039 53.244 0 10 8 2 0 0 0 0.6895 1 29467 29467 18.135 0 1 747220 + 46264 21382 30934 31676 54236 54236 0.0020123645499552367 PLETFLENF 9 Unmodified _PLETFLENF_ 0 0 0 ENSG00000167987|ENST00000301765|VPS37C ENSG00000167987|ENST00000301765|VPS37C ENSG00000167987|ENST00000301765|VPS37C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7802734375 2 555.279315 1108.54408 0.98383 0.0005463 -2.1009 -0.0011666 -1.117 -0.00062026 555.2788207735731 81.285 0.73074 80.793 80.641 81.372 -0.49247 53 36 2 0 0 0 0.28047 1 44477 44477 18.135 1.1927 1 4979500 46265 7695 30935 31677 54237 54237 -0.005853829964962642 PLETFLQTL 9 Unmodified _PLETFLQTL_ 0 0 0 ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 ENSG00000160999|ENST00000444095|SH2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2981567382812 2 531.297507 1060.58046 0.34592 0.00018379 0.60495 0.00032141 0.95087 0.00050519 531.2978805171044 81.321 0.53019 81.321 81.046 81.576 0 74 24 4 0 0 0 0.37804 1 45033 45033 13.508 0.97634 1 4660400 46266 6777 30936 31678 54238 54238 0.05259493900234702 PLEVTGVVFHY 11 Unmodified _PLEVTGVVFHY_ 0 0 0 ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8914794921875 3 420.892284 1259.65502 -0.14975 -6.3031E-05 -1.1174 -0.0004703 -1.2671 -0.00053333 420.891927302743 30.562 0.21532 30.592 30.498 30.713 0.030106 20 9 3 0 0 0 0.71503 1 15991 15991 2.8433 0.75932 1 907240 46267 4196 30937 31679 54239 54239 0.03558256711653485 PLEVVDHGF 9 Unmodified _PLEVVDHGF_ 0 0 0 REV__ENST00000486587.1_1_9:130214250-130215833:+|nuORF REV__ENST00000486587.1_1_9:130214250-130215833:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.218994140625 2 506.758549 1011.50255 -0.23637 -0.00011978 0.83926 0.0004253 0.60289 0.00030552 506.75909523209185 48.526 0.26151 48.526 48.413 48.675 0 19 12 2 0 0 0 0.21819 1 26594 26594 2.0598 0 1 2965400 + 46268 27808 30938 31680 54240 54240 -0.002745189651363944 PLEVVVPACDE 11 Unmodified _PLEVVVPACDE_ 0 0 0 REV__ENSG00000131043|ENST00000320849|AAR2 REV__ENSG00000131043|ENST00000320849|AAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8605346679688 3 390.861885 1169.56383 -0.29874 -0.00011676 0.93131 0.00036401 0.63257 0.00024725 390.8622830881057 31.277 0.91758 31.307 30.904 31.822 0.030106 95 40 3 0 0 0 0.6889 1 16597 16597 2.4348 0 1 5851600 + 46269 19765 30939 31681 54241 54241 -0.014173750480040326 PLEYRCLPC 9 Unmodified _PLEYRCLPC_ 0 0 0 REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF REV__ENST00000456023.1_1_2:85824088-85824624:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7647705078125 2 547.262087 1092.50962 0.6706 0.00036699 0.83226 0.00045546 1.5029 0.00082246 547.763507371851 81.188 0.14839 80.695 80.666 80.815 -0.49247 16 11 2 0 0 0 0.48152 1 44481 44481 8.5933 0 1 1492100 + 46270 22355 30940 31682 54242 54242 -0.03293245680583823 PLFAAFFGDF 10 Unmodified _PLFAAFFGDF_ 0 0 0 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 REV__nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7146606445312 2 566.279118 1130.54368 0.64298 0.00036411 -0.047175 -2.6714E-05 0.5958 0.00033739 566.279148108353 60.692 0.20726 60.692 60.536 60.743 0 14 8 2 0 0 0 0.23117 1 33772 33772 11.64 2.2929 1 630570 + 46271 22382 30941 31683 54243 54243 -0.01636757925666643 PLFAYFIR 8 Unmodified _PLFAYFIR_ 0 0 0 ENSG00000197208|ENST00000200652|SLC22A4;ENST00000425923.1_1_5:131657926-131660304:+|nuORF;ENST00000461013.5_1_5:131719758-131729961:+|nuORF;ENSG00000197375|ENST00000245407|SLC22A5;nc|ENSG00000197375|O76082-3|SLC22A5 ENSG00000197208|ENST00000200652|SLC22A4 ENSG00000197208|ENST00000200652|SLC22A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8192749023438 2 513.792195 1025.56984 0.83792 0.00043052 2.1686 0.0011142 3.0066 0.0015447 513.7921349259161 66.966 0.18376 66.984 66.939 67.123 0.018036 9 8 2 0 0 0 8.7369 1 36796 36796 10.183 0 1 1043100 46272 9927 30942 31684 54244 54244 0.05807556036438655 PLFDLLSKL 9 Unmodified _PLFDLLSKL_ 0 0 0 REV__ENSG00000176986|ENST00000345254|SEC24C REV__ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8206787109375 2 523.318243 1044.62193 0.81549 0.00042676 0.84769 0.00044361 1.6632 0.00087038 523.3186916735932 80.252 0.7 79.762 79.479 80.179 -0.48932 49 27 2 0 0 0 0.49272 1 44024 44024 7.9102 0 1 615040 + 46273 22956 30943 31685 54245 54245 0.10140674659578508 PLFDSSFALLF 11 Unmodified _PLFDSSFALLF_ 0 0 0 REV__ENSG00000146205|ENST00000674324|ANO7 REV__ENSG00000146205|ENST00000674324|ANO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8319702148438 2 628.831714 1255.64888 0.70129 0.00044099 0.41695 0.00026219 1.1182 0.00070319 628.8314188184148 70.311 0.31011 70.346 70.193 70.503 0.035507 31 14 3 0 0 0 0.46578 1 38681 38681 18.146 3.741 1 6189700 + 46274 20817 30944 31686 54246 54246 0.031277384800887376 PLFEDKMY 8 Unmodified _PLFEDKMY_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7503662109375 2 521.749336 1041.48412 0.30946 0.00016146 -1.2868 -0.00067139 -0.97735 -0.00050993 521.7483701287566 65.369 0.22782 65.369 65.247 65.475 0 14 8 2 0 0 0 0.77907 1 36491 36491 10.183 1.5901 1 845610 + 46275 20769 30945 31687 54247 54247 -0.034963969313594134 PLFEGIGYA 9 Unmodified _PLFEGIGYA_ 0 0 0 nc|ENSG00000132164|P48066-2|SLC6A11;ENSG00000132164|ENST00000254488|SLC6A11 nc|ENSG00000132164|P48066-2|SLC6A11 nc|ENSG00000132164|P48066-2|SLC6A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4978637695312 1 966.49311 965.485833 -0.84365 -0.00081538 0.18356 0.00017741 -0.66009 -0.00063797 966.4929798485633 78.049 0.35448 77.567 77.405 77.76 -0.4826 64 28 3 0 0 0 0.37804 1 42716 42716 13.508 0 1 11779000 46276 4374 30946 31688 54248 54248 0.0017098014889143087 PLFFPSCIF 9 Unmodified _PLFFPSCIF_ 0 0 0 ENST00000519344.5_1_6:154567882-154568747:-|nuORF ENST00000519344.5_1_6:154567882-154568747:-|nuORF ENST00000519344.5_1_6:154567882-154568747:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7759399414062 2 535.772614 1069.53067 0.89002 0.00047685 3.3588 0.0017996 4.2488 0.0022764 535.7738160240185 99.982 0.1152 93.806 93.755 93.87 -6.1757 11 7 2 0 0 0 0.10925 1 66802 66802 32.117 1.8922 1 19428000 46277 14705 30947 31689 54249 54249 -0.001309123094415554 PLFGSWTF 8 Unmodified _PLFGSWTF_ 0 0 0 ENST00000309890.11_1_17:3828316-3828526:-|nuORF ENST00000309890.11_1_17:3828316-3828526:-|nuORF ENST00000309890.11_1_17:3828316-3828526:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7397766113281 2 477.739628 953.464704 0.47707 0.00022791 -0.8151 -0.00038941 -0.33804 -0.00016149 477.7393423489776 43.216 0.3164 43.2 43.083 43.399 -0.015671 22 14 2 0 0 0 0.41521 1 23161 23161 42.968 8.8656 1 6623400 46278 11668 30948 31690 54250 54250 -0.013889851599628855 PLFGYVLCYF 10 Unmodified _PLFGYVLCYF_ 0 0 0 REV__ENST00000477274.1_1_X:153276255-153284091:-|nuORF REV__ENST00000477274.1_1_X:153276255-153284091:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.302734375 2 611.304278 1220.594 NaN NaN NaN NaN NaN NaN NaN 82.212 1 81.717 81.217 82.217 -0.4952 0 0 0 0.96627 1 45010 45010 4.3292 0 1 + 46279 23407 30949 31691 54251 54251 -0.00746971592184309 PLFHWFLH 8 Unmodified _PLFHWFLH_ 0 0 0 REV__ENST00000371712.3_1_9:139327034-139327620:-|nuORF REV__ENST00000371712.3_1_9:139327034-139327620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1951293945312 3 366.19575 1095.56542 -0.53066 -0.00019432 -0.92574 -0.000339 -1.4564 -0.00053332 366.1952940339554 19.25 0.18489 19.274 19.184 19.369 0.023106 22 11 2 0 0 0 0.80975 1 9679 9679 0.45834 0.18932 1 853150 + 46280 26089 30950 31692 54252 54252 0.021460916135538355 PLFKNLYD 8 Unmodified _PLFKNLYD_ 0 0 0 REV__nc|ENSG00000139908|Q6SA08|TSSK4 REV__nc|ENSG00000139908|Q6SA08|TSSK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1010.537719726562 1 1009.53531 1008.52803 0.35573 0.00035912 -0.27676 -0.0002794 0.078965 7.9718E-05 1009.5347228975199 88.319 0.43951 87.815 87.561 88 -0.50423 48 19 3 0 0 0 0.80975 1 48398 48398 0.79363 0 1 7218400 + 46281 20438 30951 31693 54253 54253 0.024109555572636054 PLFKNLYD 8 Unmodified _PLFKNLYD_ 0 0 0 REV__nc|ENSG00000139908|Q6SA08|TSSK4 REV__nc|ENSG00000139908|Q6SA08|TSSK4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1009.53531 1008.52803 0.35573 0.00035912 -0.27676 -0.0002794 0.078965 7.9718E-05 1009.5347228975199 88.319 0.43951 87.815 87.561 88 -0.50423 0 0 NaN 0.79363 48 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7218400 + 46282 20438 30951 31693 0.024109555572636054 PLFLHYVL 8 Unmodified _PLFLHYVL_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2930603027344 2 501.294571 1000.57459 NaN NaN NaN NaN NaN NaN NaN 57.81 1 57.32 56.82 57.82 -0.48974 0 0 0 0.78208 1 31421 31421 24.21 3.3387 1 46283 2760 30952 31694 54254 54254 0.07432440179218247 PLFLLCLSL 9 Unmodified _PLFLLCLSL_ 0 0 0 ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3023986816406 2 509.803914 1017.59328 -0.065339 -3.331E-05 -0.99659 -0.00050807 -1.0619 -0.00054138 509.8035672427455 70.382 0.17774 69.903 69.777 69.954 -0.47903 10 7 2 0 0 0 0.20528 1 38490 38490 8.5933 0 1 1248200 46284 12469 30953 31695 54255 54255 0.08518233758763927 PLFLPYYI 8 Unmodified _PLFLPYYI_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2916259765625 2 513.288954 1024.56336 0.23962 0.00012299 1.2539 0.00064361 1.4935 0.0007666 513.2898461313677 84.696 1.0401 78.52 77.837 78.877 -6.1757 80 59 2 0 0 0 0.61999 1 55510 55510 24.21 0 1 18933000 46285 3937 30954 31696 54256 54256 0.05205618085074093 PLFPPPELACE 11 Unmodified _PLFPPPELACE_ 0 0 0 ENSG00000235718|ENST00000619721|MFRP ENSG00000235718|ENST00000619721|MFRP ENSG00000235718|ENST00000619721|MFRP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.8443603515625 2 606.8021 1211.58965 0.40746 0.00024725 0.59505 0.00036108 1.0025 0.00060832 606.8017498694198 101.94 0.11387 95.767 95.7 95.814 -6.1757 15 5 4 0 0 0 0.304 1 68403 68403 3.5965 1.2938 1 17910000 46286 10639 30955 31697 54257 54257 -0.0076848080573199695 PLFPPYRLL 9 Unmodified _PLFPPYRLL_ 0 0 0 REV__nc|ENSG00000127586|Q8WVB6-3|CHTF18 REV__nc|ENSG00000127586|Q8WVB6-3|CHTF18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.2422180175781 3 372.558577 1114.6539 1.7301 0.00064455 1.1498 0.00042835 2.8798 0.0010729 372.55909314381273 94.09 0.24026 87.914 87.823 88.064 -6.1757 21 13 2 0 0 0 0.21404 1 62367 62367 2.7352 0.23671 1 6707400 + 46287 19586 30956 31698 54258 54258 0.10116087133383189 PLFRIPDGY 9 Unmodified _PLFRIPDGY_ 0 0 0 REV__ENSG00000123091|ENST00000242719|RNF11 REV__ENSG00000123091|ENST00000242719|RNF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2849731445312 2 539.290017 1076.56548 0.1766 9.5238E-05 -3.5181 -0.0018973 -3.3415 -0.001802 539.2886281853554 77.695 1.4244 77.747 76.802 78.226 0.052452 115 59 3 0 0 0 0.25681 1 42687 42687 19.257 0 1 16716000 + 46288 19368 30957 31699 54259 54259 0.030260468229016624 PLFSHLSSQNI 11 Unmodified _PLFSHLSSQNI_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6;nc|ENSG00000141424|Q13433-2|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8270874023438 2 621.827495 1241.64044 0.74862 0.00046551 -1.7316 -0.0010768 -0.98299 -0.00061125 621.826226056682 100.77 0.13421 100.73 100.68 100.82 -0.04216 6 4 2 0 0 0 0.53099 1 55996 55996 14.838 1.7958 1 7129800 46289 5324 30958 31700 54260 54260 0.029281845634841375 PLFSLGLQHK 10 Unmodified _PLFSLGLQHK_ 0 0 0 REV__nc|ENSG00000170954|Q09FC8-4|ZNF415 REV__nc|ENSG00000170954|Q09FC8-4|ZNF415 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5577697753906 3 380.557236 1138.64988 0.49368 0.00018787 1.3005 0.0004949 1.7941 0.00068277 380.55768819950373 63.406 0.51171 63.384 63.029 63.541 -0.021614 67 25 4 0 0 0 0.70895 1 34674 34674 1.9064 0.1641 1 14111000 + 46290 22524 30959 31701 54261 54261 0.08609997639632638 PLFSTESVL 9 Unmodified _PLFSTESVL_ 0 0 0 REV__ENST00000484881.5_1_2:74756974-74758788:+|nuORF REV__ENST00000484881.5_1_2:74756974-74758788:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7676391601562 2 496.768583 991.522613 0.10647 5.2891E-05 -0.49136 -0.00024409 -0.38489 -0.0001912 496.7683098896577 76.439 0.27238 75.96 75.812 76.084 -0.47945 23 17 2 0 0 0 0.46577 1 41903 41903 9.3474 0 1 3986300 + 46291 27759 30960 31702 54262 54262 0.026512319748235313 PLFSTESVL 9 Unmodified _PLFSTESVL_ 0 0 0 REV__ENST00000484881.5_1_2:74756974-74758788:+|nuORF REV__ENST00000484881.5_1_2:74756974-74758788:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 496.768583 991.522613 0.10647 5.2891E-05 -0.49136 -0.00024409 -0.38489 -0.0001912 496.7683098896577 76.439 0.27238 75.96 75.812 76.084 -0.47945 0 0 NaN 9.3474 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3986300 + 46292 27759 30960 31702 0.026512319748235313 PLFTKQWYL 9 Unmodified _PLFTKQWYL_ 0 0 0 nc|ENSG00000125851|P16519-2|PCSK2;nc|ENSG00000125851|P16519-3|PCSK2;ENSG00000125851|ENST00000262545|PCSK2 nc|ENSG00000125851|P16519-2|PCSK2 nc|ENSG00000125851|P16519-2|PCSK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2217712402344 3 399.221853 1194.64373 0.21361 8.5279E-05 0.029768 1.1884E-05 0.24338 9.7163E-05 399.22194842538136 40.105 0.18563 40.11 40.026 40.212 0.0050545 14 8 2 0 0 0 0.4887 1 21369 21369 8.1555 0.67846 1 2484600 46293 3899 30961 31703 54263 54263 0.054194794081240616 PLFVHDAV 8 Unmodified _PLFVHDAV_ 0 0 0 REV__nc|ENSG00000114270|Q02388-2|COL7A1 REV__nc|ENSG00000114270|Q02388-2|COL7A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2449645996094 2 449.245078 896.475603 NaN NaN NaN NaN NaN NaN NaN 61.327 1 61.327 60.827 61.827 0 0 0 0 0.97444 1 34195 34195 2.5775 0 1 + 46294 18909 30962 31704 54264 54264 0.023224172143159194 PLGAALVLSYV 11 Unmodified _PLGAALVLSYV_ 0 0 0 REV__ENSG00000184574|ENST00000329858|LPAR5 REV__ENSG00000184574|ENST00000329858|LPAR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.222412109375 3 368.221742 1101.6434 NaN NaN NaN NaN NaN NaN NaN 74.495 1 74.019 73.519 74.519 -0.47588 0 0 0 0.94287 1 40773 40773 0.45452 0 1 + 46295 23426 30963 31705 54265 54265 0.09664059688270754 PLGAQVTYP 9 Unmodified _PLGAQVTYP_ 0 0 0 REV__ENSG00000142185|ENST00000397928|TRPM2 REV__ENSG00000142185|ENST00000397928|TRPM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 945.50390625 1 945.504009 944.496732 0.44065 0.00041663 -1.3248 -0.0012526 -0.88416 -0.00083598 945.5024194033634 63.941 0.31642 63.456 63.296 63.613 -0.48512 28 17 2 0 0 0 0.10925 1 34953 34953 32.117 7.4431 1 5208200 + 46296 20563 30964 31706 54266 54266 0.022263825231902956 PLGGRRVG 8 Unmodified _PLGGRRVG_ 0 0 0 ENST00000527696.5_1_11:209075-209246:+|nuORF ENST00000527696.5_1_11:209075-209246:+|nuORF ENST00000527696.5_1_11:209075-209246:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.489501953125 1 811.489696 810.48242 1.3318 0.0010807 -0.4283 -0.00034756 0.90348 0.00073316 811.4891510995521 87.236 0.41277 81.06 80.825 81.237 -6.1757 32 22 2 0 0 0 0.80044 1 57420 57420 6.3541 0 1 12784000 46297 14839 30965 31707 54267 54267 0.06959774885569914 PLGHFSAAR 9 Unmodified _PLGHFSAAR_ 0 0 0 REV__ENSG00000169184|ENST00000302326|MN1 REV__ENSG00000169184|ENST00000302326|MN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.9279479980469 2 478.259051 954.503549 0.4294 0.00020536 -1.0037 -0.00048005 -0.57434 -0.00027468 478.2585832681134 59.461 0.33764 58.971 58.814 59.151 -0.49079 19 15 2 0 0 0 0.21819 1 32443 32443 2.0598 0 1 1197300 + 46298 22383 30966 31708 54268 54268 0.02447740194418202 PLGHFSVGGL 10 Unmodified _PLGHFSVGGL_ 0 0 0 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 ENSG00000163132|ENST00000382723|MSX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2684020996094 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 57.859 1 57.37 56.87 57.87 -0.48974 0 0 0 0.81521 1 31449 31449 11.64 0 1 46299 6958 30967 31709 54269 54269 0.03165491134382137 PLGIQVVAGPF 11 Unmodified _PLGIQVVAGPF_ 0 0 0 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 ENSG00000165591|ENST00000374900|FAAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.322265625 2 549.321317 1096.62808 0.34188 0.0001878 1.0191 0.00055981 1.361 0.00074761 549.3220140767335 39.734 0.20463 39.739 39.627 39.832 0.0050545 12 9 2 0 0 0 0.6249 1 21180 21180 10.074 2.465 1 850270 46300 7362 30968 31710 54270 54270 0.0836319289110179 PLGKESPLL 9 Unmodified _PLGKESPLL_ 0 0 0 nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF;ENSG00000140470|ENST00000268070|ADAMTS17 nc|ENSG00000140470|Q8TE56-2|ADAMTS17 nc|ENSG00000140470|Q8TE56-2|ADAMTS17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2868957519531 2 477.286943 952.559333 0.25441 0.00012143 0.41532 0.00019823 0.66973 0.00031965 477.287084803753 78.023 0.25038 78.023 77.9 78.15 0 14 10 2 0 0 0 0.46577 1 43351 43351 9.3474 0 1 468290 46301 5240 30969 31711 54271 54271 0.08115528591372367 PLGLALLAT 9 Unmodified _PLGLALLAT_ 0 0 0 REV__ENSG00000198797|ENST00000361539|BRINP2 REV__ENSG00000198797|ENST00000361539|BRINP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8786315917969 2 434.778754 867.542954 1.3973 0.00060751 0.17637 7.6681E-05 1.5737 0.00068419 434.7788159238491 82.444 0.29671 82.506 82.394 82.691 0.061996 15 10 2 0 0 0 0.11303 1 45584 45584 26.341 8.2063 1 1368300 + 46302 24062 30970 31712 54272 54272 0.10388447425293634 PLGLLKRQRR 10 Unmodified _PLGLLKRQRR_ 0 0 0 REV__ENSG00000131747|ENST00000423485|TOP2A REV__ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.93896484375 3 412.938562 1235.79386 1.7701 0.00073096 0.81616 0.00033702 2.5863 0.001068 412.9388686923768 105.07 0.080315 98.896 98.856 98.936 -6.1757 13 10 2 0 0 0 0.71276 1 70371 70371 0.62683 0 1 44864000 + 46303 19809 30971 31713 54273 54273 0.18539264190440008 PLGPLAELF 9 Unmodified _PLGPLAELF_ 0 0 0 ENSG00000284395|ENST00000640283|PERCC1 ENSG00000284395|ENST00000640283|PERCC1 ENSG00000284395|ENST00000640283|PERCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.777099609375 2 478.776211 955.537869 -0.078005 -3.7347E-05 4.3422 0.0020789 4.2642 0.0020416 478.7766928365412 78.515 0.2957 78.029 77.942 78.238 -0.48596 18 12 2 0 0 0 0.48152 1 43033 43033 8.5933 3.8373 1 801290 46304 10959 30972 31714 54274 54274 0.05832143562656711 PLGPLAELF 9 Unmodified _PLGPLAELF_ 0 0 0 ENSG00000284395|ENST00000640283|PERCC1 ENSG00000284395|ENST00000640283|PERCC1 ENSG00000284395|ENST00000640283|PERCC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 478.776211 955.537869 0.25917 0.00012408 2.7504 0.0013168 3.0096 0.0014409 478.7769817670554 77.988 0.081955 77.988 77.922 78.004 0 -0.020281 -0.00069822 NaN 8.5933 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 483140 46305 10959 30972 31714 0.05832143562656711 PLGPRHGGGV 10 Unmodified _PLGPRHGGGV_ 0 0 0 REV__ENST00000304858.6_1_5:132387893-132388025:+|nuORF REV__ENST00000304858.6_1_5:132387893-132388025:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7655944824219 2 473.764501 945.514448 NaN NaN NaN NaN NaN NaN NaN 89.646 1 89.145 88.645 89.645 -0.50171 0 0 0 0.98914 1 49010 49010 1.8442 0 1 + 46306 25362 30973 31715 54275 54275 0.039511425687237534 PLGPSGVC 8 Unmodified _PLGPSGVC_ 0 0 0 REV__ENST00000479100.1_1_1:32136193-32138672:-|nuORF REV__ENST00000479100.1_1_1:32136193-32138672:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1842041015625 2 365.183632 728.352711 NaN NaN NaN NaN NaN NaN NaN 17.359 1 17.359 16.859 17.859 0 0 0 0 0.97348 1 8545 8545 5.7604 0 1 + 46307 17736 30974 31716 54276 54276 -0.022331625085939777 PLGPVHSLY 9 Unmodified _PLGPVHSLY_ 0 0 0 REV__nc|ENSG00000104447|Q9UHF7|TRPS1 REV__nc|ENSG00000104447|Q9UHF7|TRPS1 MSMS AL20221201_MKP_PDAC_01 4 491.7710876464844 2 491.77146 981.528367 NaN NaN NaN NaN NaN NaN NaN 55.258 1 49.337 48.837 49.837 -5.9211 0 0 0 0.13852 1 35155 35155 38.151 2.107 1 + 46308 18359 30975 31717 54277 54277 0.03686375277140996 PLGQQQDMI 9 Unmodified _PLGQQQDMI_ 0 0 0 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 ENSG00000076382|ENST00000321765|SPAG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2543334960938 2 515.255317 1028.49608 0.097221 5.0093E-05 -1.3251 -0.00068275 -1.2279 -0.00063266 515.2547015911664 66.413 0.37917 65.93 65.792 66.171 -0.48323 48 18 3 0 0 0 0.41742 1 36274 36274 11.64 11.64 1 12992000 46309 1187 30976 31718 54278 54278 -0.01702780188156794 PLGQTEPLF 9 Unmodified _PLGQTEPLF_ 0 0 0 REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 REV__nc|ENSG00000168065|Q9NSA0-2|SLC22A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2693786621094 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 75.065 1 75.065 74.565 75.565 0 0 0 0 0.6032 1 41761 41761 12.532 1.7076 1 + 46310 22285 30977 31719 54279 54279 0.022706516946641386 PLGRAQDTF 9 Unmodified _PLGRAQDTF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000529428.5_1_16:30280378-30291878:-|nuORF;ENST00000568855.1_1_16:70265056-70269235:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2637939453125 2 502.761623 1003.50869 -0.44676 -0.00022461 2.4608 0.0012372 2.0141 0.0010126 502.76332613275645 30.399 0.38523 30.399 30.222 30.607 0 56 18 5 0 0 0 0.37804 1 15851 15851 13.508 1.8676 1 24546000 46311 6500 30978 31720 54280 54280 0.007079992663761914 PLGSLIDSFL 10 Unmodified _PLGSLIDSFL_ 0 0 0 REV__ENSG00000104549|ENST00000265896|SQLE REV__ENSG00000104549|ENST00000265896|SQLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3015747070312 2 531.297507 1060.58046 1.3201 0.00070135 2.8019 0.0014886 4.122 0.00219 531.2989283132962 95.754 0.44855 89.579 89.496 89.944 -6.1757 35 27 2 0 0 0 0.14917 1 63432 63432 39.957 5.77 1 9356700 + 46312 18364 30979 31721 54281 54281 0.05259493900234702 PLGTDMLSI 9 Unmodified _PLGTDMLSI_ 0 0 0 REV__ENST00000521165.1_1_5:170380683-170395393:+|nuORF REV__ENST00000521165.1_1_5:170380683-170395393:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2373657226562 2 473.749336 945.484119 0.1763 8.3521E-05 -2.9099 -0.0013786 -2.7336 -0.001295 473.74755724525687 65.516 0.27644 65.516 65.32 65.597 0 28 10 4 0 0 0 0.17666 1 36475 36475 19.439 1.304 1 4003100 + 46313 24201 30980 31722 54282 54282 0.009196030686439371 PLGTIQEL 8 Unmodified _PLGTIQEL_ 0 0 0 REV__nc|ENSG00000290292|Q8IX15|HOMEZ REV__nc|ENSG00000290292|Q8IX15|HOMEZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.495849609375 1 870.49311 869.485833 -0.39085 -0.00034023 0.14359 0.00012499 -0.24727 -0.00021524 870.4930084357447 55.276 0.35991 55.276 55.077 55.437 0 35 15 3 0 0 0 0.79669 1 30690 30690 8.5933 0 1 7014600 + 46314 30025 30981 31723 54283 54283 0.0458698014890615 PLGTLEYK 8 Unmodified _PLGTLEYK_ 0 0 0 REV__nc|ENSG00000143322|P42684-10|ABL2 REV__nc|ENSG00000143322|P42684-10|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 922.5125122070312 1 920.50876 919.501483 0.60182 0.00055398 -0.56028 -0.00051574 0.04154 3.8238E-05 920.5082650403008 49.923 0.29855 49.531 49.374 49.672 -0.3923 33 14 3 0 0 0 0.80722 1 26933 26933 2.3027 0 1 9090200 + 46315 29676 30982 31724 54284 54284 0.038512666659471506 PLGTSSEL 8 Unmodified _PLGTSSEL_ 0 0 0 REV__nc|ENSG00000196588|Q969V6|MRTFA REV__nc|ENSG00000196588|Q969V6|MRTFA MSMS AL20221201_MKP_PDAC_01 4 402.2113952636719 2 402.210901 802.407249 NaN NaN NaN NaN NaN NaN NaN 55.562 1 49.641 49.141 50.141 -5.9211 0 0 0 0.95201 1 35381 35381 10.183 0 1 + 46316 23850 30983 31725 54285 54285 -0.0018587215619163544 PLGVRTRR 8 Unmodified _PLGVRTRR_ 0 0 0 ENST00000428021.1_2_2:58274102-58275677:+|nuORF ENST00000428021.1_2_2:58274102-58275677:+|nuORF ENST00000428021.1_2_2:58274102-58275677:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8031005859375 2 477.801417 953.588282 NaN NaN NaN NaN NaN NaN NaN 93.711 1 93.253 92.753 93.753 -0.4574 0 0 0 0.9706 1 51205 51205 6.3541 0 1 46317 13202 30984 31726 54286 54286 0.10963110731040615 PLHACGEVL 9 Unmodified _PLHACGEVL_ 0 0 0 REV__ENST00000366711.3_1_1:228363404-228363947:+|nuORF REV__ENST00000366711.3_1_1:228363404-228363947:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7445068359375 2 469.741845 937.469137 0.83521 0.00039233 1.8405 0.00086457 2.6757 0.0012569 469.7427446513933 59.698 0.32844 53.584 53.452 53.78 -6.1147 21 18 2 0 0 0 0.078417 1 38383 38383 38.151 3.9638 1 26332000 + 46318 25963 30985 31727 54287 54287 -0.0020984400869110686 PLHFVLELPI 10 Unmodified _PLHFVLELPI_ 0 0 0 REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2367858886719 3 393.237504 1176.69068 -0.6207 -0.00024408 -1.4035 -0.00055192 -2.0242 -0.000796 393.2370854006669 48.72 0.2735 48.72 48.579 48.852 0 18 12 2 0 0 0 0.69064 1 26775 26775 1.9064 0 1 2041100 + 46319 19345 30986 31728 54288 54288 0.10940338959267137 PLHFVLSTI 9 Unmodified _PLHFVLSTI_ 0 0 0 REV__ENSG00000180708|ENST00000641042|OR10K2 REV__ENSG00000180708|ENST00000641042|OR10K2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.8035278320312 2 513.80276 1025.59097 1.0878 0.00055891 -1.4907 -0.00076594 -0.40293 -0.00020703 513.801295317014 100.27 0.14131 94.095 94.03 94.171 -6.1757 15 8 2 0 0 0 0.19613 1 67067 67067 7.9102 1.187 1 34395000 + 46320 23164 30987 31729 54289 54289 0.0791952134532039 PLHHAKNCDF 10 Unmodified _PLHHAKNCDF_ 0 0 0 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1;ENST00000524043.1_1_2:190618786-190626366:-|nuORF;nc|ENSG00000128694|Q9H4B0-2|OSGEPL1;ENSG00000128694|ENST00000264151|OSGEPL1 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.279052734375 2 591.279657 1180.54476 0.49028 0.00028989 0.28815 0.00017038 0.77844 0.00046027 591.7813021203041 87.252 0.33797 86.747 86.562 86.9 -0.50423 32 13 3 0 0 0 0.68719 1 47772 47772 4.3292 0 1 1379000 46321 4085 30988 31730 54290 54290 -0.038288668284167215 PLHHAKNCDF 10 Unmodified _PLHHAKNCDF_ 0 0 0 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1;ENST00000524043.1_1_2:190618786-190626366:-|nuORF;nc|ENSG00000128694|Q9H4B0-2|OSGEPL1;ENSG00000128694|ENST00000264151|OSGEPL1 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2802124023438 2 591.279657 1180.54476 0.37686 0.00022283 0.7244 0.00042832 1.1013 0.00065115 591.2802464773449 97.102 0.3774 96.859 96.667 97.045 -0.24277 26 16 2 0 0 0 0.69064 1 53047 53047 3.9444 0.3479 1 569120 46322 4085 30988 31730 54291 54291 -0.038288668284167215 PLHHSLNDPL 10 Unmodified _PLHHSLNDPL_ 0 0 0 REV__ENST00000476848.5_1_21:43792873-43802453:-|nuORF REV__ENST00000476848.5_1_21:43792873-43802453:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.7990112304688 2 571.80128 1141.58801 NaN NaN NaN NaN NaN NaN NaN 85.019 1 78.843 78.343 79.343 -6.1757 0 0 0 0.57227 1 55968 55968 22.736 1.1993 1 + 46323 27600 30989 31731 54292 54292 0.022876462205204007 PLHHTGCL 8 Unmodified _PLHHTGCL_ 0 0 0 REV__ENST00000514073.1_1_4:3919607-3925846:-|nuORF REV__ENST00000514073.1_1_4:3919607-3925846:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2207641601562 2 439.22108 876.427607 0.5812 0.00025528 1.3068 0.00057398 1.888 0.00082926 439.22144889426033 82.458 0.31224 81.962 81.767 82.079 -0.4952 22 12 2 0 0 0 0.80624 1 45115 45115 2.8892 0 1 949660 + 46324 28188 30990 31732 54293 54293 -0.01554979977356652 PLHLGHHPLF 10 Unmodified _PLHLGHHPLF_ 0 0 0 REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF REV__ENST00000324607.7_1_6:20152917-20212568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.3245849609375 2 584.324725 1166.6349 0.20808 0.00012159 -1.2109 -0.00070755 -1.0028 -0.00058597 584.3240375253423 69.304 0.3177 69.304 69.127 69.444 0 34 13 3 0 0 0 0.57332 1 38679 38679 12.532 0.29089 1 4313900 + 46325 25536 30991 31733 54294 54294 0.058245505623062854 PLHLTSNGFVL 11 Unmodified _PLHLTSNGFVL_ 0 0 0 REV__ENSG00000099960|ENST00000382932|SLC7A4 REV__ENSG00000099960|ENST00000382932|SLC7A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3330078125 2 599.334956 1196.65536 0.3587 0.00021498 -1.6666 -0.00099887 -1.3079 -0.00078389 599.3328825975972 94.865 0.17503 88.69 88.573 88.748 -6.1757 23 9 3 0 0 0 0.088819 1 62830 62830 43.772 7.6454 1 9214600 + 46326 17996 30992 31734 54295 54295 0.06489676431465341 PLHLVPKPPAP 11 Unmodified _PLHLVPKPPAP_ 0 0 0 ENST00000253083.8_1_12:123346375-123346573:+|nuORF;ENST00000537322.1_1_12:123346375-123346949:+|nuORF ENST00000253083.8_1_12:123346375-123346573:+|nuORF ENST00000253083.8_1_12:123346375-123346573:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2084655761719 3 389.241248 1164.70191 0.13304 5.1786E-05 1.664 0.00064771 1.7971 0.0006995 389.24171413722956 53.155 0.37952 53.091 52.882 53.262 -0.063423 24 18 3 0 0 0 0.304 1 28710 28710 0.50596 0 1 1264200 46327 11157 30993 31735 54296 54296 0.12615161053417978 PLHNPPQLPL 10 Unmodified _PLHNPPQLPL_ 0 0 0 REV__nc|ENSG00000102452|Q8IZF0-2|NALCN REV__nc|ENSG00000102452|Q8IZF0-2|NALCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3247680664062 2 563.324391 1124.63423 NaN NaN NaN NaN NaN NaN NaN 68.631 1 68.656 68.156 69.156 0.025146 0 0 0 0.48706 1 37705 37705 26.884 6.43 1 + 46328 29542 30994 31736 54297 54297 0.07689711122611698 PLHNPPQLPL 10 Unmodified _PLHNPPQLPL_ 0 0 0 REV__nc|ENSG00000102452|Q8IZF0-2|NALCN REV__nc|ENSG00000102452|Q8IZF0-2|NALCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3242797851562 2 563.324391 1124.63423 NaN NaN NaN NaN NaN NaN NaN 68.812 1 68.838 68.338 69.338 0.025146 0 0 0 0.61917 1 37807 37807 20.454 4.6064 1 + 46329 29542 30994 31736 54298 54298 0.07689711122611698 PLHQQVHLL 9 Unmodified _PLHQQVHLL_ 0 0 0 REV__ENST00000419007.5_1_3:50310971-50311493:+|nuORF REV__ENST00000419007.5_1_3:50310971-50311493:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2147216796875 3 362.213581 1083.61891 1.8936 0.00068589 0.26486 9.5935E-05 2.1585 0.00078183 362.2136555312562 37.607 0.34771 33.238 33.017 33.364 -4.3689 45 20 3 0 0 0 0.40476 1 22147 22147 12.241 3.2644 1 18678000 + 46330 26813 30995 31737 54299 54299 0.08044844325422673 PLHRWPQL 8 Unmodified _PLHRWPQL_ 0 0 0 REV__ENSG00000177721|ENST00000616064|ANXA2R REV__ENSG00000177721|ENST00000616064|ANXA2R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7982788085938 2 523.798343 1045.58213 NaN NaN NaN NaN NaN NaN NaN 60.811 1 60.321 59.821 60.821 -0.48932 0 0 0 0.93066 1 33118 33118 14.582 3.7578 1 + 46331 23000 30996 31738 54300 54300 0.061165924995066234 PLHSHQQYNHM 11 Unmodified _PLHSHQQYNHM_ 0 0 0 REV__nc|ENSG00000153234|P43354-2|NR4A2 REV__nc|ENSG00000153234|P43354-2|NR4A2 MSMS AL20221201_MKP_PDAC_01 4 464.5478820800781 3 464.547294 1390.62005 NaN NaN NaN NaN NaN NaN NaN 20.646 1 17.953 17.453 18.453 -2.693 0 0 0 0.93933 1 11006 11006 2.6312 0 1 + 46332 21162 30997 31739 54301 54301 -0.05963309367984948 PLHSRAFL 8 Unmodified _PLHSRAFL_ 0 0 0 REV__ENST00000535222.5_1_11:61188589-61189007:-|nuORF REV__ENST00000535222.5_1_11:61188589-61189007:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7724914550781 2 470.771794 939.529036 0.37163 0.00017495 0.95206 0.0004482 1.3237 0.00062316 470.77228430992386 35.91 0.19458 35.91 35.816 36.01 0 16 9 2 0 0 0 0.80044 1 19024 19024 6.3541 0 1 3657400 + 46333 28521 30998 31740 54302 54302 0.0568521471685699 PLHSSKKTI 9 Unmodified _PLHSSKKTI_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.9404296875 2 505.803291 1009.59203 -0.13253 -6.7033E-05 -0.28759 -0.00014546 -0.42012 -0.0002125 505.8033136278282 58.556 0.27196 58.065 57.901 58.173 -0.49079 23 12 3 0 0 0 0.18118 1 31793 31793 18.135 18.135 1 1843100 + 46334 21482 30999 31741 54303 54303 0.08761735714244878 PLHSSPLL 8 Unmodified _PLHSSPLL_ 0 0 0 REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.2533874511719 2 432.252903 862.491253 0.51107 0.00022091 0.89929 0.00038872 1.4104 0.00060963 432.25365908031984 57.464 0.29258 57.464 57.281 57.573 0 17 12 2 0 0 0 0.64035 1 31957 31957 22.453 6.6844 1 661250 + 46335 22550 31000 31742 54304 54304 0.05450703731378326 PLHSSPLL 8 Unmodified _PLHSSPLL_ 0 0 0 REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 432.252903 862.491253 0.51107 0.00022091 0.89929 0.00038872 1.4104 0.00060963 432.25365908031984 57.464 0.29258 57.464 57.281 57.573 0 0 0 NaN 22.453 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 661250 + 46336 22550 31000 31742 0.05450703731378326 PLHSWLILY 9 Unmodified _PLHSWLILY_ 0 0 0 ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.216552734375 3 381.218332 1140.63317 NaN NaN NaN NaN NaN NaN NaN 35.699 1 35.724 35.224 36.224 0.024967 0 0 0 0.34649 1 18885 18885 22.736 5.2936 1 46337 9271 31001 31743 54305 54305 0.06847496753721316 PLHTGAAQVM 10 Unmodified _PLHTGAAQVM_ 0 0 0 nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF nc|ENSG00000197136|Q9H6A9-3|PCNX3 nc|ENSG00000197136|Q9H6A9-3|PCNX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7652587890625 2 512.765852 1023.51715 0.40195 0.00020611 -0.33931 -0.00017399 0.062642 3.2121E-05 512.7656699457609 29.867 0.22381 26.566 26.459 26.683 -3.3016 18 10 2 0 0 0 0.1942 1 16796 16796 34.402 1.616 1 22861000 46338 13372 31002 31744 54306 54306 0.006332299113523732 PLHVAASCGY 10 Unmodified _PLHVAASCGY_ 0 0 0 ENST00000586992.1_1_19:55624031-55624193:-|nuORF;nc|ENSG00000125503|Q9BZL4-5|PPP1R12C;nc|ENSG00000125503|Q9BZL4-2|PPP1R12C;nc|ENSG00000125503|Q9BZL4-3|PPP1R12C;nc|ENSG00000125503|Q9BZL4-4|PPP1R12C;ENSG00000125503|ENST00000263433|PPP1R12C ENST00000586992.1_1_19:55624031-55624193:-|nuORF ENST00000586992.1_1_19:55624031-55624193:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2476501464844 2 509.244752 1016.47495 NaN NaN NaN NaN NaN NaN NaN 60.839 1 60.839 60.339 61.339 0 0 0 0 0.5926 1 33929 33929 21.747 0.87544 1 46339 3858 31003 31745 54307 54307 -0.032627454970338476 PLHVFVLLL 9 Unmodified _PLHVFVLLL_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENST00000436236.1_1_3:31638325-31661336:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8396606445312 2 525.839146 1049.66374 2.2591 0.0011879 -1.4148 -0.00074394 0.84435 0.00044399 525.8384049374334 96.359 0.31303 96.352 96.192 96.505 -0.007019 26 10 3 0 0 0 0.047696 1 53511 53511 45.75 9.2838 1 3994000 46340 7010 31004 31746 54308 54308 0.14089275138780977 PLHYPLLMGPR 11 Unmodified _PLHYPLLMGPR_ 0 0 0 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.3399658203125 2 647.36045 1292.70635 0.46891 0.00030355 -2.2982 -0.0014878 -1.8293 -0.0011842 647.8596353586094 79.183 0.20525 78.697 78.619 78.824 -0.48596 12 8 2 0 0 0 0.70701 1 43369 43369 3.5965 0.60125 1 380770 46341 10319 31005 31747 54309 54309 0.07170302204667678 PLHYPLLMGPR 11 Unmodified _PLHYPLLMGPR_ 0 0 0 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 647.36045 1292.70635 0.59907 0.00038781 -1.9415 -0.0012569 -1.3424 -0.00086904 647.8609331166848 78.638 0.12697 78.691 78.601 78.728 0.052444 -0.0029582 0.00025621 NaN 3.5965 8 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1517900 46342 10319 31005 31747 0.07170302204667678 PLIAESAH 8 Unmodified _PLIAESAH_ 0 0 0 REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4473876953125 1 837.446494 836.439217 -0.0057168 -4.7875E-06 -1.5296 -0.001281 -1.5354 -0.0012858 837.4452510116929 79.069 0.37154 79.069 78.809 79.181 0 29 17 2 0 0 0 0.77907 1 43828 43828 10.183 3.8293 1 1687500 + 46343 21096 31006 31748 54310 54310 0.014455403176043546 PLIAESAH 8 Unmodified _PLIAESAH_ 0 0 0 REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF REV__ENST00000514421.1_1_5:43388450-43412448:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.4462890625 1 837.446494 836.439217 0.44578 0.00037331 -0.37566 -0.00031459 0.070119 5.8721E-05 837.4460599967524 79.547 0.39151 79.058 78.821 79.212 -0.48932 29 16 2 0 0 0 0.77907 1 43492 43492 10.183 0.83596 1 1460500 + 46344 21096 31006 31748 54311 54311 0.014455403176043546 PLIASFSFD 9 Unmodified _PLIASFSFD_ 0 0 0 REV__ENSG00000187474|ENST00000339223|FPR3 REV__ENSG00000187474|ENST00000339223|FPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.50439453125 1 996.503674 995.496398 -0.047027 -4.6863E-05 -0.5959 -0.00059382 -0.64293 -0.00064068 996.5028232765953 90.232 0.50224 90.232 89.967 90.47 0 71 33 3 0 0 0 0.28047 2 50018 49824;50018 18.135 4.9146 1 1858600 + 46345 23634 31007 31749 54312;54313 54313 -0.0015303719666235338 PLIASSFRSW 10 Unmodified _PLIASSFRSW_ 0 0 0 REV__ENST00000464038.5_1_2:31155024-31369832:-|nuORF REV__ENST00000464038.5_1_2:31155024-31369832:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7704467773438 2 582.314023 1162.61349 1.7579 0.0010237 -2.5378 -0.0014778 -0.77985 -0.00045412 582.3125939025525 49.962 0.22125 49.913 49.805 50.027 -0.048824 14 10 2 0 0 0 0.23117 1 26986 26986 1.6526 0 1 776940 + 46346 27364 31008 31750 54314 54314 0.03869120742956511 PLIDQTFY 8 Unmodified _PLIDQTFY_ 0 0 0 nc|ENSG00000008056|P17600-2|SYN1;ENSG00000008056|ENST00000295987|SYN1 nc|ENSG00000008056|P17600-2|SYN1 nc|ENSG00000008056|P17600-2|SYN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7544555664062 2 498.755475 995.496398 0.31425 0.00015674 -0.98364 -0.0004906 -0.66939 -0.00033386 498.7551427122805 90.293 0.51197 90.293 89.941 90.453 0 72 34 3 0 0 0 0.76859 1 49856 49856 11.114 2.5212 1 1755200 46347 375 31009 31751 54315 54315 -0.0015303719667372206 PLIEETPIG 9 Unmodified _PLIEETPIG_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7688903808594 2 484.768583 967.522613 0.26784 0.00012984 0.68723 0.00033315 0.95508 0.00046299 484.76867982573754 79.861 0.2067 79.861 79.729 79.936 0 12 8 2 0 0 0 0.53666 1 44354 44354 5.2307 0.47466 1 421560 46348 5688 31010 31752 54316 54316 0.03755231974810158 PLIETPVL 8 Unmodified _PLIETPVL_ 0 0 0 REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2 REV__nc|ENSG00000139793|Q5VZF2-3|MBNL2 MSMS AL20221201_MKP_PDAC_01 4 441.2701721191406 2 441.270761 880.52697 NaN NaN NaN NaN NaN NaN NaN 72.057 1 65.881 65.381 66.381 -6.1757 0 0 0 0.94749 1 47150 47150 11.114 0 1 + 46349 20432 31011 31753 54317 54317 0.08192741188372565 PLIHPAFSI 9 Unmodified _PLIHPAFSI_ 0 0 0 ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF ENST00000437916.2_1_2:45148822-45149500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7906799316406 2 497.789653 993.564752 0.67076 0.0003339 -0.56238 -0.00027995 0.10838 5.3952E-05 497.7894445023708 52.769 0.2223 52.706 52.603 52.826 -0.063419 19 10 2 0 0 0 0.18465 1 28611 28611 24.674 3.8027 1 2195100 46350 13355 31012 31754 54318 54318 0.06771252173848552 PLIILYFILIL 11 Unmodified _PLIILYFILIL_ 0 0 0 REV__ENSG00000183706|ENST00000328795|OR4N4 REV__ENSG00000183706|ENST00000328795|OR4N4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.9381103515625 2 665.941068 1329.86758 NaN NaN NaN NaN NaN NaN NaN 88.638 1 88.638 88.138 89.138 0 0 0 0 0.94301 1 49058 49058 0.35063 0 1 + 46351 23369 31013 31755 54319 54319 0.215843747895633 PLILDLNKY 9 Unmodified _PLILDLNKY_ 0 0 0 REV__ENSG00000135298|ENST00000370598|ADGRB3 REV__ENSG00000135298|ENST00000370598|ADGRB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8208618164062 2 544.82115 1087.62775 0.49133 0.00026769 -0.0047553 -2.5908E-06 0.48657 0.0002651 544.8213323646032 73.04 0.44523 73.04 72.749 73.195 0 40 20 3 0 0 0 0.37804 1 40578 40578 13.508 5.5977 1 788360 + 46352 20049 31014 31756 54320 54320 0.08743773171249813 PLILMKIRQ 9 Unmodified _PLILMKIRQ_ 0 0 0 REV__nc|ENSG00000112964|P10912-4|GHR REV__nc|ENSG00000112964|P10912-4|GHR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8194580078125 2 556.354637 1110.69472 0.38629 0.00021492 -1.0762 -0.00059875 -0.68992 -0.00038384 556.3539931827046 51.8 0.2633 51.742 51.611 51.875 -0.058918 25 12 3 0 0 0 0.19613 1 28064 28064 12.532 7.7755 1 3012200 + 46353 18844 31015 31757 54321 54321 0.1438010518131705 PLILNPRH 8 Unmodified _PLILNPRH_ 0 0 0 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 ENSG00000139083|ENST00000396373|ETV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2931518554688 2 480.292894 958.571235 0.14619 7.0213E-05 0.48142 0.00023122 0.62761 0.00030144 480.2930936987127 33.751 0.28199 33.78 33.625 33.907 0.028934 35 11 4 0 0 0 0.74163 1 17821 17821 13.508 0 1 21406000 46354 5122 31016 31758 54322 54322 0.0902919012522716 PLILSSEHSEV 11 Unmodified _PLILSSEHSEV_ 0 0 0 REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF REV__ENST00000512204.5_1_17:48185497-48187458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5497436523438 3 404.215316 1209.62412 0.07306 2.9532E-05 0.89003 0.00035976 0.96309 0.0003893 404.2156482978616 59.515 0.20483 59.461 59.33 59.535 -0.053062 15 10 2 0 0 0 0.46578 1 32442 32442 10.315 4.0809 1 2906600 + 46355 16975 31017 31759 54323 54323 0.0276905860671377 PLIMIAMI 8 Unmodified _PLIMIAMI_ 0 0 0 nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2705993652344 2 451.26611 900.517667 1.2551 0.00056638 1.0381 0.00046846 2.2932 0.0010348 451.26652294136704 55.087 0.55294 49.166 48.921 49.474 -5.9211 79 34 3 0 0 0 0.42709 1 35218 35218 41.817 0 1 75386000 46356 1500 31018 31760 54324 54324 0.0634293330683704 PLIQDYDTSYM 11 Unmodified _PLIQDYDTSYM_ 0 0 0 REV__nc|ENSG00000065833|P48163-2|ME1 REV__nc|ENSG00000065833|P48163-2|ME1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2802734375 3 449.204199 1344.59077 1.038 0.00046626 -1.1326 -0.00050875 -0.094589 -4.249E-05 449.20424645734954 70.327 0.31525 70.363 70.234 70.549 0.035507 36 14 4 0 0 0 0.3058 1 38803 38803 1.4551 0 1 4176500 + 46357 17388 31019 31761 54325 54325 -0.06774311227491125 PLIQGYTVL 9 Unmodified _PLIQGYTVL_ 0 0 0 ENST00000529077.5_1_11:134236970-134242406:+|nuORF;ENSG00000149328|ENST00000535456|GLB1L2 ENST00000529077.5_1_11:134236970-134242406:+|nuORF ENST00000529077.5_1_11:134236970-134242406:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7669982910156 2 502.294768 1002.57498 0.26388 0.00013255 0.0025508 1.2812E-06 0.26643 0.00013383 502.2948486854177 79.26 0.29659 78.774 78.596 78.893 -0.48596 24 12 3 0 0 0 0.19298 1 43436 43436 13.508 1.8676 1 650550 46358 6004 31020 31762 54326 54326 0.07379815108413368 PLIRDKKISQF 11 Unmodified _PLIRDKKISQF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|80|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|80|3|sense MSMS AL20221201_MKP_PDAC_01 4 672.906494140625 2 672.903537 1343.79252 NaN NaN NaN NaN NaN NaN NaN 94.823 1 88.647 88.147 89.147 -6.1757 0 0 0 0.85601 1 62808 62808 9.3831 0.63772 1 + 46359 29445 31021 31763 54327 54327 0.13437585311021394 PLIRDSNNY 9 Unmodified _PLIRDSNNY_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2789306640625 2 546.277638 1090.54072 1.0373 0.00056667 -1.8218 -0.00099522 -0.7845 -0.00042855 546.2781345683094 71.338 1.6597 65.162 64.826 66.486 -6.1757 129 86 4 0 0 0 0.32871 1 47451 47451 15.847 1.0089 1 78360000 46360 9395 31022 31764 54328 54328 -0.0009263305048534676 PLIRTTFF 8 Unmodified _PLIRTTFF_ 0 0 0 ENST00000240185.7_1_1:11082980-11083142:+|nuORF ENST00000240185.7_1_1:11082980-11083142:+|nuORF ENST00000240185.7_1_1:11082980-11083142:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7920532226562 2 497.789653 993.564752 1.1171 0.00055607 1.9794 0.00098535 3.0965 0.0015414 497.791046992061 88.611 0.60946 82.435 82.096 82.706 -6.1757 54 33 2 0 0 0 0.50586 1 58474 58474 34.187 12.441 1 22763000 46361 11104 31023 31765 54329 54329 0.06771252173848552 PLISILFYDL 10 Unmodified _PLISILFYDL_ 0 0 0 REV__ENST00000290795.7_1_1:46126652-46126787:-|nuORF REV__ENST00000290795.7_1_1:46126652-46126787:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.3456420898438 2 597.344458 1192.67436 0.36578 0.0002185 0.71423 0.00042664 1.08 0.00064514 597.8468462972594 102.13 0.085617 95.956 95.918 96.003 -6.1757 7 3 3 0 0 0 0.23412 1 68568 68568 5.7319 4.0792 1 3147100 + 46362 25238 31024 31766 54330 54330 0.08573213002523516 PLISLVAL 8 Unmodified _PLISLVAL_ 0 0 0 REV__ENSG00000166471|ENST00000528080|TMEM41B REV__ENSG00000166471|ENST00000528080|TMEM41B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.5464477539062 1 825.544417 824.537141 2.3116 0.0019084 0.68866 0.00056852 3.0003 0.0024769 825.5451997930509 95.15 0.35001 95.154 94.942 95.292 0.004158 22 12 2 0 0 0 0.41521 1 52924 52924 42.968 0 1 2378400 + 46363 22125 31025 31767 54331 54331 0.11785348913622329 PLITASYV 8 Unmodified _PLITASYV_ 0 0 0 ENSG00000181698|ENST00000641665|OR5T1;ENSG00000172489|ENST00000313033|OR5T3;nc|ENSG00000172489|Q8NGG3|OR5T3 ENSG00000181698|ENST00000641665|OR5T1 ENSG00000181698|ENST00000641665|OR5T1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 863.4877319335938 1 863.487296 862.48002 -0.25853 -0.00022324 1.5201 0.0013126 1.2616 0.0010894 863.4886204009913 66.992 0.21246 66.508 66.333 66.546 -0.48323 10 9 2 0 0 0 0.65867 1 36572 36572 20.871 0 1 781380 46364 8989 31026 31768 54332 54332 0.04327881637232167 PLITWLDY 8 Unmodified _PLITWLDY_ 0 0 0 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS AL20221201_MKP_PDAC_01 4 510.7737426757812 2 510.773668 1019.53278 NaN NaN NaN NaN NaN NaN NaN 92.61 1 86.434 85.934 86.934 -6.1757 0 0 0 0.63034 1 61250 61250 32.117 0 1 + 46365 29850 31027 31769 54333 54333 0.023798397000291516 PLIVFFLYF 9 Unmodified _PLIVFFLYF_ 0 0 0 REV__ENST00000262644.8_1_8:57871129-57871213:-|nuORF REV__ENST00000262644.8_1_8:57871129-57871213:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.6832885742188 2 579.833529 1157.6525 0.42133 0.0002443 1.2786 0.00074138 1.6999 0.00098568 580.3344641161787 74.847 0.10626 74.847 74.763 74.869 0 5 4 2 0 0 0 0.53666 1 41644 41644 5.2307 0 1 205100 + 46366 25028 31028 31770 54334 54334 0.0799845304459268 PLIWLSLEM 9 Unmodified _PLIWLSLEM_ 0 0 0 REV__ENST00000517882.1_1_5:172484532-172484580:+|nuORF REV__ENST00000517882.1_1_5:172484532-172484580:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.2599487304688 2 551.304278 1100.594 1.014 0.00055904 2.7454 0.0015135 3.7594 0.0020726 551.8071097586289 37.995 0.15488 33.626 33.531 33.686 -4.3689 9 8 2 0 0 0 0.19298 1 22299 22299 4.756 0 1 4876300 + 46367 28233 31029 31771 54335 54335 0.047730284078397744 PLIYSLRKK 9 Unmodified _PLIYSLRKK_ 0 0 0 ENSG00000171054|ENST00000338616|OR13H1 ENSG00000171054|ENST00000338616|OR13H1 ENSG00000171054|ENST00000338616|OR13H1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.6923828125 2 559.358234 1116.70191 1.7394 0.00097292 -0.75242 -0.00042087 0.98694 0.00055205 559.3575846879515 105.91 0.54275 99.738 99.568 100.11 -6.1757 92 69 2 0 0 0 0.21889 1 71094 71094 0.6015 0 1 4079000 46368 8057 31030 31772 54336 54336 0.14823161053391232 PLKALLLE 8 Unmodified _PLKALLLE_ 0 0 0 REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A REV__nc|ENSG00000175182|Q6UXB0-2|FAM131A MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7956237792969 2 448.794404 895.574254 1.6352 0.00073385 1.5754 0.00070703 3.2106 0.0014409 448.7948463874257 100.8 0.067307 94.629 94.584 94.651 -6.1757 6 4 2 0 0 0 0.80143 1 67520 67520 5.7604 0 1 13303000 + 46369 22846 31031 31773 54337 54337 0.1222902045938099 PLKARKVRFSE 11 Unmodified _PLKARKVRFSE_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A;nc|ENSG00000087074|O75807-2|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.27099609375 3 444.269978 1329.7881 0.98529 0.00043773 0.23136 0.00010278 1.2166 0.00054052 444.27013517014854 42.933 0.4365 38.249 37.994 38.431 -4.6846 83 27 4 0 0 0 0.69838 1 26073 26073 4.4062 0.28952 1 41783000 46370 1449 31032 31774 54338 54338 0.13640120888135243 PLKCCEAI 8 Unmodified _PLKCCEAI_ 0 0 0 REV__CON__Q3SZ57 REV__CON__Q3SZ57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7192687988281 2 438.719524 875.424495 -0.57908 -0.00025405 -0.4273 -0.00018746 -1.0064 -0.00044152 438.71932533414525 19.055 0.43966 19.078 18.784 19.223 0.023106 62 35 2 0 0 0 0.79669 1 9456 9456 8.5933 0 1 1344600 + + 46371 16876 31033 31775 54339 54339 -0.018199911463852914 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.9131774902344 3 365.913131 1094.71756 -0.24086 -8.8134E-05 0.15149 5.5432E-05 -0.089372 -3.2703E-05 365.913137110578 35.474 0.34828 35.474 35.326 35.674 0 34 17 3 0 0 0 0.20428 1 18784 18784 16.566 4.3911 1 4786600 + 46372 27200 31034 31776 54340 54340 0.17399447570460325 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.9128112792969 3 365.913131 1094.71756 -0.41551 -0.00015204 -0.35116 -0.0001285 -0.76668 -0.00028054 365.9130100725664 35.518 0.41224 35.295 35.107 35.519 -0.2224 37 18 3 0 0 0 0.20428 1 18669 18669 16.566 4.3911 1 9100100 + 46373 27200 31034 31776 54341 54341 0.17399447570460325 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.9129638671875 3 365.913131 1094.71756 -0.086386 -3.161E-05 -0.10404 -3.8068E-05 -0.19042 -6.9678E-05 365.91308374316424 35.23 0.52143 35.257 35.039 35.56 0.027401 83 24 4 0 0 0 0.047788 2 18563 18563;18675 35.612 0 1 75252000 + 46374 27200 31034 31776 54342;54343 54342 0.17399447570460325 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.52490234375 3 365.913131 1094.71756 -0.086386 -3.161E-05 -0.10404 -3.8068E-05 -0.19042 -6.9678E-05 365.91308374316424 35.23 0.52143 35.257 35.039 35.56 0.027401 83 24 4 0 0 0 0.18054 1 18539 18539 16.566 1.6087 1 75252000 + 46375 27200 31034 31776 54344 54344 0.17399447570460325 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.913818359375 3 365.913131 1094.71756 1.5292 0.00055955 -0.028832 -1.055E-05 1.5003 0.000549 365.91309660591446 39.237 0.64815 34.786 34.459 35.107 -4.4509 133 40 4 0 0 0 0.047788 3 23407 23140;23278;23407 38.615 0 1 294030000 + 46376 27200 31034 31776 54345;54346;54347 54347 0.17399447570460325 PLKDRLIKL 9 Unmodified _PLKDRLIKL_ 0 0 0 REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF REV__ENST00000450295.5_3_9:91992741-91993038:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2477416992188 3 365.913131 1094.71756 1.3002 0.00047578 -0.72003 -0.00026347 0.58021 0.00021231 365.9127769592872 76.277 1.1395 70.101 69.48 70.62 -6.1757 151 61 3 0 0 0 0.032796 2 49864 49743;49864 42.312 0 1 41088000 + 46377 27200 31034 31776 54348;54349 54349 0.17399447570460325 PLKEYRVLL 9 Unmodified _PLKEYRVLL_ 0 0 0 REV__SZT2|p.I751V|1|0.15|ENSG00000198198|chr1:43423312-43423312|A/G|missense_variant REV__SZT2|p.I751V|1|0.15|ENSG00000198198|chr1:43423312-43423312|A/G|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2186584472656 3 377.569253 1129.68593 0.752 0.00028393 1.3609 0.00051382 2.1129 0.00079776 377.5699039385479 57.533 0.17451 57.467 57.339 57.513 -0.066036 13 8 2 0 0 0 0.21806 1 31264 31264 2.7352 0 1 1395200 + 46378 30106 31035 31777 54350 54350 0.12627454816515638 PLKGASSI 8 Unmodified _PLKGASSI_ 0 0 0 ENST00000466757.7_1_10:73472535-73475261:+|nuORF;ENST00000442677.3_1_10:73474904-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF ENST00000466757.7_1_10:73472535-73475261:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.7331237792969 2 386.731803 771.449054 NaN NaN NaN NaN NaN NaN NaN 28.554 1 25.406 24.906 25.906 -3.1482 0 0 0 0.92452 1 15940 15940 15.847 0 1 46379 13412 31036 31778 54351 54351 0.054187283229907734 PLKIMKSPFN 10 Unmodified _PLKIMKSPFN_ 0 0 0 REV__nc|ENSG00000197617|Q7Z5H4|VN1R5 REV__nc|ENSG00000197617|Q7Z5H4|VN1R5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2260131835938 3 392.22661 1173.658 0.78366 0.00030737 0.17524 6.8732E-05 0.95889 0.0003761 392.22676213108235 26.982 0.60974 23.946 23.609 24.219 -3.0365 101 31 4 0 0 0 0.66569 1 14799 14799 3.5871 3.5871 1 240390000 + 46380 29892 31037 31779 54352 54352 0.07811808564792955 PLKLWLELN 9 Unmodified _PLKLWLELN_ 0 0 0 REV__ENST00000357214.5_1_1:35656541-35657042:-|nuORF REV__ENST00000357214.5_1_1:35656541-35657042:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.9207153320312 3 375.893737 1124.65938 0.30172 0.00011342 2.477 0.00093108 2.7787 0.0010445 375.89479097368525 39.721 0.10256 39.726 39.668 39.77 0.0050583 6 4 2 0 0 0 0.21819 1 21175 21175 1.0715 0 1 338110 + 46381 25845 31038 31780 54353 54353 0.10203765925166408 PLKMNHWLF 9 Unmodified _PLKMNHWLF_ 0 0 0 REV__ENSG00000183751|ENST00000568546|TBL3 REV__ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.8800659179688 3 395.879433 1184.61647 -0.10822 -4.2841E-05 2.0629 0.00081668 1.9547 0.00077384 395.8804192149976 35.743 0.22258 35.743 35.635 35.858 0 20 10 3 0 0 0 0.37804 1 18908 18908 13.042 1.5246 1 3319200 + 46382 23374 31039 31781 54354 54354 0.031546725960879485 PLKMSVDYI 9 Unmodified _PLKMSVDYI_ 0 0 0 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 ENSG00000119203|ENST00000238112|CPSF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7840576171875 2 533.286085 1064.55762 0.54944 0.00029301 -2.191 -0.0011684 -1.6416 -0.00087543 533.284825669643 61.977 0.58364 55.802 55.351 55.934 -6.1757 28 19 2 0 0 0 0.18144 1 39878 39878 24.991 0.97039 1 34843000 46383 3417 31040 31782 54355 54355 0.02792151511107477 PLKNKHFG 8 Unmodified _PLKNKHFG_ 0 0 0 ENST00000556382.1_1_15:92977594-92988160:+|nuORF;ENSG00000140557|ENST00000268164|ST8SIA2 ENST00000556382.1_1_15:92977594-92988160:+|nuORF ENST00000556382.1_1_15:92977594-92988160:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7730407714844 2 470.771794 939.529036 0.66854 0.00031473 1.1411 0.00053718 1.8096 0.0008519 470.7721494066535 58.018 0.239 57.952 57.852 58.091 -0.066036 19 11 2 0 0 0 0.80624 1 31599 31599 2.8892 0.31174 1 4097500 46384 5253 31041 31783 54356 54356 0.05685214716845621 PLKQDVNF 8 Unmodified _PLKQDVNF_ 0 0 0 REV__nc|ENSG00000188986|Q8WX92|NELFB REV__nc|ENSG00000188986|Q8WX92|NELFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7608947753906 2 480.761092 959.507631 NaN NaN NaN NaN NaN NaN NaN 64.606 1 64.606 64.106 65.106 0 0 0 0 0.9706 1 36031 36031 6.3541 0 1 + 46385 23749 31042 31784 54357 54357 0.026257848974637454 PLKQTPTI 8 Unmodified _PLKQTPTI_ 0 0 0 REV__ENSG00000177485|ENST00000557385|ZBTB33 REV__ENSG00000177485|ENST00000557385|ZBTB33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2739562988281 2 449.273835 896.533118 0.12859 5.7772E-05 0.29428 0.00013221 0.42287 0.00018998 449.27398447532914 66.643 0.28912 66.16 65.964 66.254 -0.48323 22 13 2 0 0 0 0.6895 1 36351 36351 18.135 0 1 870910 + 46386 22987 31043 31785 54358 54358 0.08071259419898524 PLKRATYSF 9 Unmodified _PLKRATYSF_ 0 0 0 REV__ENST00000590761.1_17:34640712-34640859:+|nuORF REV__ENST00000590761.1_17:34640712-34640859:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5383605957031 3 361.537953 1081.59203 -0.42707 -0.0001544 -0.52343 -0.00018924 -0.95051 -0.00034364 361.53778164172905 20.399 0.134 20.399 20.281 20.415 0 28 16 2 0 0 0 0.48152 1 10237 10237 8.7454 0 1 1638800 + 46387 24649 31044 31786 54359 54359 0.054497357142281544 PLKSKMIY 8 Oxidation (M) _PLKSKM(Oxidation (M))IY_ PLKSKM(1)IY PLKSKM(93)IY 0 0 1 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2838134765625 2 498.283346 994.552139 0.35106 0.00017493 -0.29403 -0.00014651 0.057029 2.8417E-05 498.2832948330742 24.286 0.47939 21.459 21.213 21.693 -2.8273 76 26 4 0 0 0 0.12464 2 13111 13111;13224 92.653 56.609 1 43459000 46388 8252;7335;3901 31045 31787 54360;54361 54360 696 0.05464472719290825 PLKSKMIY 8 Unmodified _PLKSKMIY_ 0 0 0 nc|ENSG00000125868|P60981-2|DSTN;ENSG00000125868|ENST00000246069|DSTN;ENST00000530945.1_1_11:65623104-65623215:-|nuORF;ENST00000602547.1_1_12:6994092-6994545:+|nuORF;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000165410|ENST00000298159|CFL2;ENSG00000172757|ENST00000308162|CFL1 nc|ENSG00000125868|P60981-2|DSTN;nc|ENSG00000165410|Q9Y281-3|CFL2;ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7873229980469 2 490.285889 978.557224 0.45231 0.00022176 -0.11011 -5.3983E-05 0.34221 0.00016778 490.2857014176136 32.994 0.36459 29.137 28.945 29.309 -3.8562 39 23 2 0 0 0 0.22167 2 18815 18815;18938 66.457 30.33 1 64220000 46389 8252;7335;3901 31045 31788 54362;54363 54362 0.06708776581911025 PLKTLESIAF 10 Unmodified _PLKTLESIAF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.5386047363281 3 373.55338 1117.63831 1.5693 0.00058622 -1.6966 -0.00063378 -0.1273 -4.7554E-05 373.5527016948473 42.731 0.29206 38.046 37.934 38.226 -4.6846 27 18 2 0 0 0 0.23767 1 25853 25853 3.5871 0.85186 1 11775000 46390 9717 31046 31789 54364 54364 0.08419755825661923 PLLAAAAAAA 10 Unmodified _PLLAAAAAAA_ 0 0 0 REV__nc|ENSG00000106799|P36897-3|TGFBR1 REV__nc|ENSG00000106799|P36897-3|TGFBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 841.5009765625 1 839.498529 838.491253 -0.11878 -9.9719E-05 -0.11401 -9.571E-05 -0.23279 -0.00019543 839.4988615045028 67.117 0.36238 66.634 66.459 66.822 -0.48269 36 16 3 0 0 0 0.72607 1 36681 36681 0 0 1 6475500 + 46391 18537 31047 31790 54365 54365 0.06554703731342215 PLLAEYCPAY 10 Unmodified _PLLAEYCPAY_ 0 0 0 REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198838|ENST00000634891|RYR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7809448242188 2 570.275718 1138.53688 0.21935 0.00012509 -0.72754 -0.0004149 -0.5082 -0.00028981 570.2761548750449 76.496 0.040359 76.016 75.99 76.031 -0.47945 5 3 2 0 0 0 0.57332 1 41879 41879 12.532 3.1841 1 1714200 + 46392 24073 31048 31791 54366 54366 -0.026844388685731246 PLLAKGSYGK 10 Unmodified _PLLAKGSYGK_ 0 0 0 REV__ENSG00000159708|ENST00000329956|LRRC36 REV__ENSG00000159708|ENST00000329956|LRRC36 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7714233398438 2 517.305667 1032.59678 0.19906 0.00010298 -1.3493 -0.00069799 -1.1502 -0.00059502 517.3049543314478 61.975 0.18624 61.975 61.885 62.072 0 11 7 2 0 0 0 0.21618 1 34539 34539 26.268 5.8145 1 784100 + 46393 21495 31049 31792 54367 54367 0.08178619856994374 PLLASWTYEC 10 Unmodified _PLLASWTYEC_ 0 0 0 ENST00000425773.1_1_20:57089925-57090084:-|nuORF ENST00000425773.1_1_20:57089925-57090084:-|nuORF ENST00000425773.1_1_20:57089925-57090084:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7805786132812 2 591.778625 1181.5427 0.2804 0.00016594 2.4179 0.0014309 2.6983 0.0015968 591.780491173545 66.951 0.20174 66.951 66.839 67.04 0 19 9 3 0 0 0 0.65502 1 37312 37312 7.9102 2.6795 1 1260600 46394 13168 31050 31793 54368 54368 -0.04081340356879082 PLLASWTYEC 10 Unmodified _PLLASWTYEC_ 0 0 0 ENST00000425773.1_1_20:57089925-57090084:-|nuORF ENST00000425773.1_1_20:57089925-57090084:-|nuORF ENST00000425773.1_1_20:57089925-57090084:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7800903320312 2 591.778625 1181.5427 NaN NaN NaN NaN NaN NaN NaN 67.61 1 67.128 66.628 67.628 -0.48218 0 0 0 0.98914 1 36940 36940 1.8442 0.19162 1 46395 13168 31050 31793 54369 54369 -0.04081340356879082 PLLAWHFV 8 Unmodified _PLLAWHFV_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2614135742188 2 491.779088 981.543623 0.26801 0.0001318 -1.9951 -0.00098117 -1.7271 -0.00084937 491.777710784898 69.276 0.35396 69.276 69.046 69.4 0 26 15 2 0 0 0 8.7369 1 38651 38651 11.114 0 1 2152100 46396 6489 31051 31794 54370 54370 0.05211286864982867 PLLAWHFV 8 Unmodified _PLLAWHFV_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7786865234375 2 491.779088 981.543623 0.078976 3.8839E-05 -0.13508 -6.6431E-05 -0.056107 -2.7592E-05 491.7782014186865 69.659 0.59798 69.18 68.742 69.34 -0.47903 52 25 3 0 0 0 0.76859 1 38154 38154 11.114 0 1 1967500 46397 6489 31051 31794 54371 54371 0.05211286864982867 PLLAWHFV 8 Unmodified _PLLAWHFV_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.779541015625 2 491.779088 981.543623 1.2684 0.00062378 -1.3989 -0.00068795 -0.1305 -6.4177E-05 491.77826249558825 71.319 0.37325 71.358 71.184 71.557 0.039032 50 16 4 0 0 0 0.80624 2 39217 39217;39319 2.8892 0 1 8545500 46398 6489 31051 31794 54372;54373 54372 0.05211286864982867 PLLCTKFT 8 Unmodified _PLLCTKFT_ 0 0 0 ENST00000476050.5_1_1:209948949-209949477:+|nuORF ENST00000476050.5_1_1:209948949-209949477:+|nuORF ENST00000476050.5_1_1:209948949-209949477:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2117614746094 2 461.756964 921.499375 0.18944 8.7475E-05 -2.2433 -0.0010359 -2.0539 -0.0009484 461.7556371430872 72.66 0.36134 72.702 72.442 72.803 0.041725 26 16 2 0 0 0 8.7369 1 39914 39914 34.102 1.9855 1 1489400 46399 13973 31052 31795 54374 54374 0.03548514656483803 PLLCWFRY 8 Unmodified _PLLCWFRY_ 0 0 0 nc|ENSG00000118961|Q9H6V9-4|LDAH;nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH nc|ENSG00000118961|Q9H6V9-4|LDAH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2839965820312 2 549.28368 1096.55281 NaN NaN NaN NaN NaN NaN NaN 57.044 1 57.044 56.544 57.544 0 0 0 0 0.9249 1 31738 31738 15.768 1.1865 1 46400 3404 31053 31796 54375 54375 0.008393121589961083 PLLDGVDGECP 11 Unmodified _PLLDGVDGECP_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.1754150390625 3 372.174352 1113.50123 0.84583 0.0003148 1.1503 0.0004281 1.9961 0.0007429 372.1746543857348 65.427 0.4742 59.252 59.036 59.51 -6.1757 36 26 2 0 0 0 0.46578 1 42473 42473 10.315 0 1 15967000 46401 9440 31054 31797 54376 54376 -0.05098521116201482 PLLDGVDGECP 11 Unmodified _PLLDGVDGECP_ 0 0 0 nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;nc|ENSG00000186001|Q96II8-3|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 nc|ENSG00000186001|Q96II8-4|LRCH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.75830078125 2 557.757889 1113.50123 0.35331 0.00019706 1.7671 0.00098562 2.1204 0.0011827 557.7587218012746 65.548 0.37793 59.373 59.132 59.51 -6.1757 37 21 2 0 0 0 0.48615 1 42611 42611 17.113 1.2657 1 22902000 46402 9440 31054 31797 54377 54377 -0.05098521116201482 PLLELTAL 8 Unmodified _PLLELTAL_ 0 0 0 ENST00000585803.1_1_18:57863810-57864818:+|nuORF ENST00000585803.1_1_18:57863810-57864818:+|nuORF ENST00000585803.1_1_18:57863810-57864818:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2703552246094 2 435.270761 868.52697 NaN NaN NaN NaN NaN NaN NaN 90.625 1 90.667 90.167 91.167 0.042175 0 0 0 0.97444 1 50412 50412 2.5775 0 1 46403 15614 31055 31798 54378 54378 0.0874474118835451 PLLESDLAYS 10 Unmodified _PLLESDLAYS_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.28173828125 2 554.282054 1106.54956 NaN NaN NaN NaN NaN NaN NaN 44.618 1 44.618 44.118 45.118 0 0 0 0 0.28434 1 24283 24283 37.974 0 1 46404 6480 31056 31799 54379 54379 0.000542957953257428 PLLFAFST 8 Unmodified _PLLFAFST_ 0 0 0 REV__ENSG00000081800|ENST00000194130|SLC13A1 REV__ENSG00000081800|ENST00000194130|SLC13A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 895.4943237304688 1 895.492381 894.485105 0.25338 0.0002269 1.3394 0.0011994 1.5928 0.0014263 895.4935341464317 80.158 0.40297 79.669 79.507 79.91 -0.48932 27 15 2 0 0 0 0.70131 2 43873 43873;43972 17.087 0 1 933600 + 46405 17696 31057 31800 54380;54381 54380 0.03364185499856376 PLLFAPAE 8 Unmodified _PLLFAPAE_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 857.476806640625 1 857.476731 856.469455 -0.043696 -3.7468E-05 0.1118 9.5868E-05 0.068107 5.84E-05 857.4770003665624 84.528 0.29327 84.029 83.864 84.157 -0.49961 24 13 2 0 0 0 0.48233 2 46202 46202;46298 36.466 0 1 1008400 46406 8320 31058 31801 54382;54383 54382 0.035478989827993246 PLLFCEIPY 9 Unmodified _PLLFCEIPY_ 0 0 0 REV__ENST00000609516.1_1_1:38148756-38148999:-|nuORF REV__ENST00000609516.1_1_1:38148756-38148999:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7855834960938 2 547.783179 1093.5518 0.90274 0.00049451 2.4035 0.0013166 3.3063 0.0018111 547.7850424649347 51.147 0.47297 45.498 45.264 45.737 -5.649 51 28 2 0 0 0 0.2001 1 32178 32178 23.148 4.7753 1 82495000 + 46407 27368 31059 31802 54384 54384 0.008770529994535536 PLLGDQVGP 9 Unmodified _PLLGDQVGP_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 895.4881591796875 1 895.488359 894.481082 -0.30664 -0.00027459 0.39271 0.00035167 0.086078 7.7082E-05 895.488710996446 57.831 0.24466 57.341 57.226 57.471 -0.48974 20 11 2 0 0 0 0.0086179 1 31410 31410 89.427 11.442 1 4555800 46408 5464 31060 31803 54385 54385 0.02962096006149295 PLLGDQVGP 9 Unmodified _PLLGDQVGP_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 895.4892578125 1 895.488359 894.481082 -0.15344 -0.00013741 0.73067 0.00065431 0.57723 0.0005169 895.4891421337225 65.53 0.47063 59.355 59.089 59.559 -6.1757 47 26 3 0 0 0 0.016184 1 42540 42540 67.344 3.1075 1 24245000 46409 5464 31060 31803 54386 54386 0.02962096006149295 PLLGFCEDY 9 Unmodified _PLLGFCEDY_ 0 0 0 ENST00000507419.5_1_5:133984116-133984272:-|nuORF ENST00000507419.5_1_5:133984116-133984272:-|nuORF ENST00000507419.5_1_5:133984116-133984272:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2952270507812 2 528.738968 1055.46338 0.42899 0.00022683 2.9149 0.0015412 3.3439 0.001768 528.7404984993722 84.433 0.22313 83.934 83.819 84.042 -0.49961 14 9 2 0 0 0 0.19298 1 46238 46238 13.508 2.3934 1 473300 46410 14538 31061 31804 54387 54387 -0.062129873110507106 PLLGGRHP 8 Unmodified _PLLGGRHP_ 0 0 0 REV__ENST00000415912.6_1_1:21544061-21544241:-|nuORF REV__ENST00000415912.6_1_1:21544061-21544241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.7503967285156 2 423.750862 845.487171 -0.069736 -2.9551E-05 0.59174 0.00025075 0.522 0.0002212 423.7510831979055 51.563 0.31483 51.509 51.361 51.675 -0.053875 31 15 3 0 0 0 0.78849 1 27899 27899 9.3474 0 1 5670800 + 46411 26763 31062 31805 54388 54388 0.05824659028314727 PLLGMLCYAQ 10 Unmodified _PLLGMLCYAQ_ 0 0 0 ENST00000250572.12_3_19:6887600-6896409:+|nuORF ENST00000250572.12_3_19:6887600-6896409:+|nuORF ENST00000250572.12_3_19:6887600-6896409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7796630859375 2 554.780113 1107.54567 0.037802 2.0972E-05 -1.1882 -0.00065918 -1.1504 -0.00063821 554.7793014508954 51.51 0.18592 51.097 51.009 51.194 -0.41351 14 9 2 0 0 0 0.65502 1 27789 27789 7.9102 0 1 3503600 46412 11140 31063 31806 54389 54389 -0.0037978850375566253 PLLHETAAQF 10 Unmodified _PLLHETAAQF_ 0 0 0 REV__ENSG00000261150|ENST00000615648|EPPK1 REV__ENSG00000261150|ENST00000615648|EPPK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3370361328125 2 563.798206 1125.58186 0.51682 0.00029138 0.21456 0.00012097 0.73137 0.00041235 564.299854269978 52.892 0.25257 52.44 52.36 52.613 -0.45173 20 12 2 0 0 0 0.23117 1 28672 28672 11.64 2.2929 1 1642500 + 46413 24580 31064 31807 54390 54390 0.024091279889717043 PLLHRALH 8 Unmodified _PLLHRALH_ 0 0 0 nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB nc|ENSG00000257365|P49356-2|FNTB nc|ENSG00000257365|P49356-2|FNTB MSMS AL20221201_MKP_PDAC_01 4 478.79296875 2 478.793061 955.571569 NaN NaN NaN NaN NaN NaN NaN 105.63 1 99.458 98.958 99.958 -6.1757 0 0 0 0.97444 1 70766 70766 2.8892 0 1 46414 10811 31065 31808 54391 54391 0.09200609845083818 PLLHREGA 8 Unmodified _PLLHREGA_ 0 0 0 ENST00000375754.8_1_9:93658667-93658919:+|nuORF ENST00000375754.8_1_9:93658667-93658919:+|nuORF ENST00000375754.8_1_9:93658667-93658919:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 446.7563781738281 2 446.753601 891.49265 NaN NaN NaN NaN NaN NaN NaN 88.261 1 82.086 81.586 82.586 -6.1757 0 0 0 0.57076 1 58221 58221 36.044 0 1 46415 12481 31066 31809 54392 54392 0.042563378201293744 PLLIDEDYY 9 Unmodified _PLLIDEDYY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.77490234375 2 570.776605 1139.53866 0.14729 8.4068E-05 -2.5125 -0.0014341 -2.3652 -0.00135 570.7750454029435 76.597 0.1974 76.118 76.037 76.235 -0.47945 19 13 2 0 0 0 0.3554 1 41902 41902 14.582 2.0501 1 1983200 46416 3132 31067 31810 54393 54393 -0.02553106578943698 PLLLGVLYFP 10 Unmodified _PLLLGVLYFP_ 0 0 0 REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9 REV__nc|ENSG00000177058|Q8NBW4-3|SLC38A9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.2090148925781 3 377.898599 1130.67397 1.0554 0.00039885 1.6573 0.0006263 2.7128 0.0010252 377.89916225541515 39.685 0.45591 35.234 34.964 35.42 -4.4509 36 28 2 0 0 0 0.23821 1 23597 23597 0.15932 0 1 9555100 + 46417 29806 31068 31811 54394 54394 0.11385838073306331 PLLLILLMP 9 Unmodified _PLLLILLMP_ 0 0 0 ENST00000452532.1_1_X:55934878-55934956:+|nuORF ENST00000452532.1_1_X:55934878-55934956:+|nuORF ENST00000452532.1_1_X:55934878-55934956:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8387451171875 2 511.837757 1021.66096 1.302 0.00066639 0.2141 0.00010959 1.5161 0.00077598 511.83786328880774 102.96 0.10076 96.781 96.742 96.842 -6.1757 67 27 3 0 0 0 0.047696 1 69064 69064 45.75 0 1 11511000 46418 13544 31069 31812 54395 54395 0.15099683689572885 PLLLKFITL 9 Unmodified _PLLLKFITL_ 0 0 0 REV__ENST00000534931.1_1_16:57079287-57079362:+|nuORF REV__ENST00000534931.1_1_16:57079287-57079362:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.355224609375 2 529.354628 1056.6947 NaN NaN NaN NaN NaN NaN NaN 104.1 1 97.924 97.424 98.424 -6.1757 0 0 0 0.84737 1 69738 69738 1.8442 1.3195 1 + 46419 28513 31070 31813 54396 54396 0.16862428452964195 PLLLKRQR 8 Unmodified _PLLLKRQR_ 0 0 0 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 ENSG00000198889|ENST00000371126|DCAF12L1 MSMS AL20221201_MKP_PDAC_01 4 512.3423461914062 2 512.342918 1022.67128 NaN NaN NaN NaN NaN NaN NaN 104.95 1 98.773 98.273 99.273 -6.1757 0 0 0 0.97444 1 70258 70258 0.69038 0 1 46420 10187 31071 31814 54397 54397 0.16085427459029233 PLLLLLLLLK 10 Unmodified _PLLLLLLLLK_ 0 0 0 REV__ENSG00000159189|ENST00000374640|C1QC REV__ENSG00000159189|ENST00000374640|C1QC MSMS AL20221201_MKP_PDAC_01 4 575.2543334960938 2 574.922678 1147.8308 NaN NaN NaN NaN NaN NaN NaN 12.48 1 9.9977 9.4977 10.498 -2.482 0 0 0 1.0061 1 6314 6314 0 0 1 + 46421 21464 31072 31815 54398 54398 0.2628012296363522 PLLLLLLLLK 10 Unmodified _PLLLLLLLLK_ 0 0 0 REV__ENSG00000159189|ENST00000374640|C1QC REV__ENSG00000159189|ENST00000374640|C1QC MSMS AL20221201_MKP_PDAC_01 4 574.9208984375 2 574.922678 1147.8308 NaN NaN NaN NaN NaN NaN NaN 14.482 1 11.979 11.479 12.479 -2.5029 0 0 0 1.0061 1 7358 7358 0 0 1 + 46422 21464 31072 31815 54399 54399 0.2628012296363522 PLLLSIQAI 9 Unmodified _PLLLSIQAI_ 0 0 0 REV__ENSG00000172742|ENST00000641962|OR4D9 REV__ENSG00000172742|ENST00000641962|OR4D9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.3121948242188 2 484.312961 966.611368 NaN NaN NaN NaN NaN NaN NaN 89.196 1 88.692 88.192 89.192 -0.50423 0 0 0 0.85737 1 48771 48771 0.6015 0 1 + 46423 22670 31073 31816 54400 54400 0.12672692005116915 PLLLSLPV 8 Unmodified _PLLLSLPV_ 0 0 0 ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2829284667969 2 426.283672 850.552791 0.10259 4.3733E-05 -2.6787 -0.0011419 -2.5761 -0.0010981 426.2826201941262 102.95 0.35916 102.95 102.73 103.09 0 25 16 2 0 0 0 0.81107 1 56752 56752 0 0 1 589980 46424 15881 31074 31817 54401 54401 0.12153635430649956 PLLLSLPV 8 Unmodified _PLLLSLPV_ 0 0 0 ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 426.283672 850.552791 0.3143 0.00013398 -2.6841 -0.0011442 -2.3698 -0.0010102 426.28265781358056 102.94 0.41433 102.84 102.64 103.06 -0.10458 -0.05248 -6.3541E-05 NaN 0 39 18 3 NaN NaN NaN NaN 0 NaN NaN 0 483120 46425 15881 31074 31817 0.12153635430649956 PLLLSLPV 8 Unmodified _PLLLSLPV_ 0 0 0 ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF ENST00000609516.1_1_1:38148823-38149105:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 426.283672 850.552791 -0.56031 -0.00023885 -2.5032 -0.0010671 -3.0635 -0.0013059 426.2826736164743 102.94 0.44967 102.89 102.69 103.14 -0.04792 -0.0011261 9.0676E-05 NaN 0 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2005600 46426 15881 31074 31817 0.12153635430649956 PLLLWPLPF 9 Unmodified _PLLLWPLPF_ 0 0 0 ENST00000334370.8_1_19:42840288-42840357:+|nuORF ENST00000334370.8_1_19:42840288-42840357:+|nuORF ENST00000334370.8_1_19:42840288-42840357:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.2085266113281 3 365.891556 1094.65284 2.0333 0.00074397 0.75354 0.00027571 2.7869 0.0010197 365.8916394784163 34.016 0.4404 30.031 29.693 30.133 -3.9853 32 23 2 0 0 0 0.21302 1 19522 19522 2.9952 0 1 5035700 46427 11884 31075 31818 54402 54402 0.1092987276445001 PLLPEAEACV 10 Unmodified _PLLPEAEACV_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000494526.1_1_10:5948484-5951317:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7312622070312 2 521.267893 1040.52123 0.31464 0.00016401 0.49608 0.00025859 0.81072 0.0004226 521.2667908935409 65.077 0.27863 65.077 64.994 65.272 0 27 11 3 0 0 0 0.18632 1 36337 36337 32.305 2.0807 1 973200 46428 4609 31076 31819 54403 54403 0.0025927461438186583 PLLPPLPDNI 10 Unmodified _PLLPPLPDNI_ 0 0 0 nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3215942382812 2 544.82115 1087.62775 0.11018 6.003E-05 -0.13108 -7.1416E-05 -0.020898 -1.1386E-05 544.8206570143349 72.772 0.4774 72.813 72.571 73.048 0.041725 36 22 2 0 0 0 0.39779 1 40052 40052 21.747 0 1 3634200 46429 1338 31077 31820 54404 54404 0.08743773171227076 PLLPSHGSYSF 11 Unmodified _PLLPSHGSYSF_ 0 0 0 REV__nc|ENSG00000148200|Q15406-3|NR6A1 REV__nc|ENSG00000148200|Q15406-3|NR6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8048706054688 2 602.803488 1203.59242 0.7738 0.00046645 -0.40853 -0.00024626 0.36527 0.00022019 603.3042443152717 81.267 0.23459 80.774 80.698 80.932 -0.49247 20 11 3 0 0 0 0.63851 1 44553 44553 9.3831 2.0939 1 1044500 + 46430 20932 31078 31821 54405 54405 -0.0012288935658943956 PLLQAMEEQQL 11 Unmodified _PLLQAMEEQQL_ 0 0 0 nc|ENSG00000177338|Q8N7U9-2|LINC00469;nc|ENSG00000177338|Q8N7U9|LINC00469 nc|ENSG00000177338|Q8N7U9-2|LINC00469 nc|ENSG00000177338|Q8N7U9-2|LINC00469 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.3347778320312 2 650.334295 1298.65404 NaN NaN NaN NaN NaN NaN NaN 61.499 1 61.499 60.999 61.999 0 0 0 0 0.86932 1 34288 34288 8.7454 0 1 46431 16405 31079 31822 54406 54406 0.01665674280411622 PLLQEEYY 8 Unmodified _PLLQEEYY_ 0 0 0 REV__ENST00000452013.5_1_3:99357368-99463837:+|nuORF REV__ENST00000452013.5_1_3:99357368-99463837:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.758544921875 2 527.758215 1053.50188 NaN NaN NaN NaN NaN NaN NaN 89.528 1 89.528 89.028 90.028 0 0 0 0 0.94749 1 49536 49536 11.114 3.2043 1 + 46432 27214 31080 31823 54407 54407 -0.022733584048637567 PLLRSHSLQ 9 Unmodified _PLLRSHSLQ_ 0 0 0 REV__ENST00000373913.7_1_20:35156076-35156352:+|nuORF REV__ENST00000373913.7_1_20:35156076-35156352:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.2567749023438 2 525.806365 1049.59818 0.46941 0.00024682 -0.65917 -0.00034659 -0.18975 -9.9774E-05 525.8059285913347 45.398 0.44939 40.443 40.207 40.656 -4.9549 75 30 3 0 0 0 0.19891 1 27803 27803 11.64 0 1 79972000 + 46433 26165 31081 31824 54408 54408 0.07536253945750104 PLLRSSLEM 9 Unmodified _PLLRSSLEM_ 0 0 0 ENST00000343348.10_1_5:115910063-115910231:-|nuORF ENST00000343348.10_1_5:115910063-115910231:-|nuORF ENST00000343348.10_1_5:115910063-115910231:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2875366210938 2 523.289159 1044.56377 NaN NaN NaN NaN NaN NaN NaN 36.5 1 36.251 35.751 36.751 -0.2497 0 0 0 0.25233 1 19154 19154 27.629 5.8822 1 46434 12002 31082 31825 54409 54409 0.043266697426361134 PLLRSTWLS 9 Unmodified _PLLRSTWLS_ 0 0 0 REV__ENST00000474216.5_1_1:11137420-11140866:-|nuORF REV__ENST00000474216.5_1_1:11137420-11140866:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2110900878906 3 358.209836 1071.60768 NaN NaN NaN NaN NaN NaN NaN 39.783 1 39.789 39.289 40.289 0.0050545 0 0 0 0.84564 1 21198 21198 1.0715 0 1 + 46435 27558 31083 31826 54410 54410 0.07474022231281197 PLLRYDSSF 9 Unmodified _PLLRYDSSF_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2841796875 2 549.284931 1096.55531 0.79545 0.00043693 -2.4053 -0.0013212 -1.6098 -0.00088426 549.2841524752899 80.978 0.31041 80.485 80.271 80.582 -0.49248 23 13 2 0 0 0 0.48152 1 44343 44343 8.5933 0 1 1333400 46436 9778 31084 31827 54411 54411 0.010894390976545765 PLLSDYESRWT 11 Unmodified _PLLSDYESRWT_ 0 0 0 REV__ENSG00000082212|ENST00000321341|ME2 REV__ENSG00000082212|ENST00000321341|ME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.332275390625 2 683.835517 1365.65648 -0.64235 -0.00043926 -1.3421 -0.0009178 -1.9845 -0.0013571 683.8349839659385 55.903 0.22371 55.903 55.746 55.969 0 30 14 3 0 0 0 0.39949 1 31050 31050 21.537 2.28 1 15413000 + 46437 17704 31085 31828 54412 54412 -0.011721539903192024 PLLSLNQLDQF 11 Unmodified _PLLSLNQLDQF_ 0 0 0 REV__SLIT1|p.S411P|1|0.17|ENSG00000187122|chr10:97056391-97056391|A/G|missense_variant REV__SLIT1|p.S411P|1|0.17|ENSG00000187122|chr10:97056391-97056391|A/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3890380859375 2 644.350803 1286.68705 0.22633 0.00014584 -0.1341 -8.641E-05 0.092225 5.9425E-05 644.3518358125572 100.95 0.10768 100.91 100.84 100.95 -0.04216 5 3 2 0 0 0 0.63851 1 56060 56060 9.3831 0 1 2526200 + 46438 30102 31086 31829 54413 54413 0.05517624394747145 PLLSMCLTI 9 Unmodified _PLLSMCLTI_ 0 0 0 nc|ENSG00000133475|P36268-2|GGT2P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P nc|ENSG00000133475|P36268-2|GGT2P nc|ENSG00000133475|P36268-2|GGT2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7788391113281 2 495.771757 989.52896 NaN NaN NaN NaN NaN NaN NaN 79.31 1 79.31 78.81 79.81 0 0 0 0 0.57317 1 44058 44058 13.508 4.1604 1 46439 16200 31087 31830 54414 54414 0.033777106103229926 PLLSPTSLPE 10 Unmodified _PLLSPTSLPE_ 0 0 0 REV__ENST00000380334.6_1_X:15721534-15721606:+|nuORF REV__ENST00000380334.6_1_X:15721534-15721606:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2955932617188 2 527.294965 1052.57538 0.58748 0.00030978 0.54249 0.00028605 1.13 0.00059583 527.2957566080303 44.231 0.41138 39.379 39.186 39.597 -4.852 53 29 2 0 0 0 0.42068 1 26970 26970 20.454 0 1 21781000 + 46440 26310 31088 31831 54415 54415 0.05119190037612498 PLLSRRAF 8 Unmodified _PLLSRRAF_ 0 0 0 ENST00000566159.1_1_16:1365264-1365732:+|nuORF ENST00000566159.1_1_16:1365264-1365732:+|nuORF ENST00000566159.1_1_16:1365264-1365732:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2939758300781 2 480.292894 958.571235 -0.14499 -6.9636E-05 1.1873 0.00057026 1.0423 0.00050062 480.29349980117405 34.025 0.2501 33.834 33.694 33.944 -0.19131 23 9 3 0 0 0 0.6895 1 17750 17750 18.135 0 1 3033600 46441 15415 31089 31832 54416 54416 0.0902919012522716 PLLSSYPVY 9 Unmodified _PLLSSYPVY_ 0 0 0 REV__ENST00000563207.1_1_16:58035387-58048199:+|nuORF REV__ENST00000563207.1_1_16:58035387-58048199:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.779541015625 2 519.778951 1037.54335 0.3635 0.00018894 0.17597 9.1465E-05 0.53947 0.00028041 519.7790609710534 84.016 0.34885 84.016 83.816 84.165 0 39 17 3 0 0 0 0.46577 1 46584 46584 9.3474 0 1 1616000 + 46442 28867 31090 31833 54417 54417 0.026078223544800494 PLLSVAIY 8 Unmodified _PLLSVAIY_ 0 0 0 REV__ENSG00000164951|ENST00000297598|PDP1 REV__ENSG00000164951|ENST00000297598|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.5257568359375 1 875.523682 874.516405 0.048279 4.2269E-05 1.7153 0.0015018 1.7636 0.0015441 875.5251916531274 72.883 0.35338 72.407 72.23 72.583 -0.47588 35 15 3 0 0 0 0.2655 1 39928 39928 59.795 0 1 1812100 + 46443 21966 31091 31834 54418 54418 0.07412758533951092 PLLTTESSHY 10 Unmodified _PLLTTESSHY_ 0 0 0 ENST00000430350.2_2_20:4667109-4679919:+|nuORF ENST00000430350.2_2_20:4667109-4679919:+|nuORF ENST00000430350.2_2_20:4667109-4679919:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2835083007812 2 574.285128 1146.5557 NaN NaN NaN NaN NaN NaN NaN 44.971 1 44.647 44.147 45.147 -0.32425 0 0 0 0.5926 1 24004 24004 21.747 1.293 1 46444 13240 31092 31835 54419 54419 -0.01171185973134925 PLLTTSSL 8 Unmodified _PLLTTSSL_ 0 0 0 REV__ENSG00000099864|ENST00000338448|PALM REV__ENSG00000099864|ENST00000338448|PALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.2457885742188 2 416.244744 830.474934 0.3999 0.00016645 1.4266 0.00059383 1.8265 0.00076029 416.24530191374686 23.236 0.23422 20.458 20.409 20.644 -2.7784 32 22 2 0 0 0 0.57045 1 12568 12568 28.487 0 1 6876900 + 46445 17987 31093 31836 54420 54420 0.052915777746079584 PLLVMGLDL 9 Unmodified _PLLVMGLDL_ 0 0 0 REV__ENSG00000131944|ENST00000588258|FAAP24 REV__ENSG00000131944|ENST00000588258|FAAP24 MSMS AL20221201_MKP_PDAC_01 4 485.7875366210938 2 485.785721 969.55689 NaN NaN NaN NaN NaN NaN NaN 49.174 1 43.778 43.278 44.278 -5.3961 0 0 0 0.13852 1 30703 30703 38.151 2.107 1 + 46446 19820 31094 31837 54421 54421 0.07089356862070417 PLLWEIDVF 9 Unmodified _PLLWEIDVF_ 0 0 0 ENST00000427960.5_1_2:190332350-190333254:+|nuORF ENST00000427960.5_1_2:190332350-190333254:+|nuORF ENST00000427960.5_1_2:190332350-190333254:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8089599609375 2 566.307875 1130.6012 0.64142 0.00036324 -2.7661 -0.0015665 -2.1247 -0.0012032 566.80814224846 87.357 0.21902 86.853 86.681 86.9 -0.50423 12 8 2 0 0 0 0.58466 1 47790 47790 2.3027 0 1 259980 46447 13201 31095 31838 54422 54422 0.04112084279881856 PLMADFIF 8 Oxidation (M) _PLM(Oxidation (M))ADFIF_ PLM(1)ADFIF PLM(43)ADFIF 0 0 1 ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2396545410156 2 485.241147 968.46774 NaN NaN NaN NaN NaN NaN NaN 42.944 1 42.944 42.444 43.444 0 0 0 0 0.47265 1 23289 23289 42.968 8.7807 1 46448 6438 31096 31839 54423 54423 1129 -0.017754780974428286 PLMGPVMG 8 Unmodified _PLMGPVMG_ 0 0 0 REV__ENSG00000063438|ENST00000684583|AHRR REV__ENSG00000063438|ENST00000684583|AHRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2046813964844 2 401.20351 800.392467 0.25262 0.00010135 3.8415 0.0015412 4.0941 0.0016426 401.2043767669864 40.521 0.37959 40.526 40.316 40.695 0.0050583 57 17 4 0 0 0 0.80624 1 21532 21532 2.8892 0 1 70611000 + 46449 17346 31097 31840 54424 54424 -0.015713588295284353 PLMGPVMG 8 Unmodified _PLMGPVMG_ 0 0 0 REV__ENSG00000063438|ENST00000684583|AHRR REV__ENSG00000063438|ENST00000684583|AHRR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 401.20351 800.392467 -0.24557 -9.8524E-05 2.2382 0.00089796 1.9926 0.00079944 401.2043148633504 40.442 0.30785 40.442 40.276 40.584 0 -0.056145 -0.00013724 NaN 2.8892 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 20289000 + 46450 17346 31097 31840 -0.015713588295284353 PLMGPVMG 8 Unmodified _PLMGPVMG_ 0 0 0 REV__ENSG00000063438|ENST00000684583|AHRR REV__ENSG00000063438|ENST00000684583|AHRR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 401.20351 800.392467 0.5103 0.00020473 2.4338 0.00097646 2.9441 0.0011812 401.20427801317794 40.829 0.28301 40.526 40.376 40.659 -0.30304 0.027986 1.9765E-05 NaN 2.8892 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6939900 + 46451 17346 31097 31840 -0.015713588295284353 PLMNQRVQ 8 Unmodified _PLMNQRVQ_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MSMS AL20221201_MKP_PDAC_01 4 493.2680969238281 2 493.266019 984.517485 NaN NaN NaN NaN NaN NaN NaN 49.954 1 44.415 43.915 44.915 -5.5391 0 0 0 0.95201 1 31268 31268 10.183 0 1 + 46452 23527 31098 31841 54425 54425 0.0246064963120034 PLMPSALPDTE 11 Unmodified _PLMPSALPDTE_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8620910644531 3 390.861885 1169.56383 1.0372 0.0004054 -0.11427 -4.4663E-05 0.92292 0.00036073 390.8620031806084 35.264 0.99252 31.169 30.718 31.711 -4.0951 135 60 3 0 0 0 0.68427 1 20500 20500 2.6312 0 1 34903000 46453 8543 31099 31842 54426 54426 -0.014173750480495073 PLMQLSCSRVY 11 Unmodified _PLMQLSCSRVY_ 0 0 0 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 ENSG00000197591|ENST00000355784|OR11L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849792480469 3 432.886148 1295.63661 NaN NaN NaN NaN NaN NaN NaN 52.024 1 51.59 51.09 52.09 -0.43367 0 0 0 0.94181 1 28082 28082 1.2148 0.14337 1 46454 9976 31100 31843 54427 54427 0.0006205547374520393 PLMVKRLL 8 Unmodified _PLMVKRLL_ 0 0 0 REV__ENSG00000158077|ENST00000299481|NLRP14 REV__ENSG00000158077|ENST00000299481|NLRP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2970275878906 2 485.317523 968.620493 NaN NaN NaN NaN NaN NaN NaN 27.462 1 27.491 26.991 27.991 0.028664 0 0 0 0.97348 1 14272 14272 5.7604 0 1 + 46455 21414 31101 31844 54428 54428 0.13492762089822463 PLNDLEQSTF 10 Unmodified _PLNDLEQSTF_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7833251953125 2 582.282586 1162.55062 1.3611 0.00079252 -0.57972 -0.00033756 0.78134 0.00045496 582.2821864977054 59.019 0.41593 52.945 52.734 53.15 -6.0745 33 22 2 0 0 0 0.43662 1 37865 37865 29.082 3.6823 1 21248000 + 46456 18564 31102 31845 54429 54429 -0.02415489835743756 PLNELEQI 8 Unmodified _PLNELEQI_ 0 0 0 REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2588195800781 2 478.258382 954.502212 0.4294 0.00020536 0.39446 0.00018866 0.82386 0.00039402 478.2585832681134 59.461 0.33764 58.971 58.814 59.151 -0.49079 19 15 2 0 0 0 0.77907 1 32337 32337 10.183 0 1 1197300 + 46457 17665 31103 31846 54430 54430 0.023140613149848832 PLNGELAEL 9 Unmodified _PLNGELAEL_ 0 0 0 REV__nc|ENSG00000005810|O75592-2|MYCBP2 REV__nc|ENSG00000005810|O75592-2|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2586059570312 2 478.258382 954.502212 0.28216 0.00013494 -0.18352 -8.7768E-05 0.098639 4.7175E-05 478.25830513787946 58.916 0.4935 58.916 58.699 59.192 0 45 21 3 0 0 0 0.30562 1 32745 32745 16.942 1.0951 1 6636200 + 46458 16974 31104 31847 54431 54431 0.023140613150076206 PLNIGMLRVYL 11 Unmodified _PLNIGMLRVYL_ 0 0 0 REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF REV__ENST00000479371.5_1_9:139697227-139701184:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 644.8754272460938 2 644.875933 1287.73731 NaN NaN NaN NaN NaN NaN NaN 76.576 1 70.401 69.901 70.901 -6.1757 0 0 0 0.79635 1 50091 50091 12.241 1.4411 1 + 46459 24279 31105 31848 54432 54432 0.1049545551893516 PLNIMAIVVF 10 Unmodified _PLNIMAIVVF_ 0 0 0 ENSG00000181104|ENST00000319211|F2R ENSG00000181104|ENST00000319211|F2R ENSG00000181104|ENST00000319211|F2R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.2129821777344 3 372.887706 1115.64129 1.6235 0.0006054 -0.18494 -6.8961E-05 1.4386 0.00053644 372.88749709062773 81.208 0.56458 75.032 74.863 75.427 -6.1757 45 32 2 0 0 0 0.23862 1 53234 53234 0.69767 0 1 13660000 46460 8952 31106 31849 54433 54433 0.08809307678802725 PLNRQIYELY 10 Unmodified _PLNRQIYELY_ 0 0 0 REV__ENSG00000048544|ENST00000053468|MRPS10 REV__ENSG00000048544|ENST00000053468|MRPS10 MSMS AL20221201_MKP_PDAC_01 4 436.5701904296875 3 436.903072 1307.68739 NaN NaN NaN NaN NaN NaN NaN 27.657 1 24.621 24.121 25.121 -3.0365 0 0 0 0.76313 1 15346 15346 8.4443 0 1 + 46461 17242 31107 31850 54434 54434 0.04585044114628545 PLNSIVPF 8 Unmodified _PLNSIVPF_ 0 0 0 REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 886.5057983398438 1 886.503281 885.496004 -0.15847 -0.00014049 0.77779 0.00068952 0.61932 0.00054903 886.5043133903711 71.338 0.3634 70.86 70.682 71.045 -0.47735 31 15 3 0 0 0 0.3408 2 38988 38988;39087 50.855 6.448 1 1756900 + 46462 25977 31108 31851 54435;54436 54435 0.048675878741505585 PLNSIVPF 8 Unmodified _PLNSIVPF_ 0 0 0 REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF REV__ENST00000367261.7_1_1:202861310-202861439:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.5040893554688 1 886.503281 885.496004 0.43471 0.00038537 1.128 0.00099998 1.5627 0.0013854 886.5043607552996 79.048 0.4517 72.872 72.665 73.117 -6.1757 44 24 2 0 0 0 0.19792 1 51705 51705 70.716 7.1527 1 13779000 + 46463 25977 31108 31851 54437 54437 0.048675878741505585 PLNWEYFQ 8 Unmodified _PLNWEYFQ_ 0 0 0 ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7337646484375 2 548.758549 1095.50255 0.22791 0.00012507 -0.71259 -0.00039104 -0.48469 -0.00026598 548.7578208755149 62.021 0.28186 62.021 61.907 62.189 0 19 11 2 0 0 0 8.7369 1 34607 34607 13.508 4.1604 1 2041900 46464 7503 31109 31852 54438 54438 -0.041385189651464316 PLNWEYFQ 8 Unmodified _PLNWEYFQ_ 0 0 0 ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.758549 1095.50255 0.60282 0.0003308 0.61324 0.00033652 1.2161 0.00066732 548.7593807375367 62.497 0.47527 62.009 61.768 62.243 -0.48764 -0.020962 -1.8443E-05 NaN 13.508 41 22 2 NaN NaN NaN NaN 0 NaN NaN 0 10125000 46465 7503 31109 31852 -0.041385189651464316 PLNWEYFQ 8 Unmodified _PLNWEYFQ_ 0 0 0 ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E ENSG00000166523|ENST00000299663|CLEC4E MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.758549 1095.50255 0.29949 0.00016435 1.4294 0.00078442 1.7289 0.00094877 548.76007325315 62.094 0.21354 62.061 61.926 62.14 -0.032787 0.030482 0.00087735 NaN 13.508 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2140500 46466 7503 31109 31852 -0.041385189651464316 PLNYFIEIL 9 Unmodified _PLNYFIEIL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3161010742188 2 561.3157 1120.61685 0.35889 0.00020145 0.46941 0.00026349 0.8283 0.00046494 561.3159590396476 100.63 0.079269 100.63 100.59 100.67 0 4 2 2 0 0 0 0.58466 1 55552 55552 2.3027 0 1 1014100 46467 9449 31110 31853 54439 54439 0.06136370796957635 PLNYKMGTAK 10 Unmodified _PLNYKMGTAK_ 0 0 0 REV__nc|ENSG00000168918|Q92835-3|INPP5D REV__nc|ENSG00000168918|Q92835-3|INPP5D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8013916015625 2 561.802434 1121.59032 NaN NaN NaN NaN NaN NaN NaN 47.869 1 47.516 47.016 48.016 -0.3526 0 0 0 0.3465 1 25670 25670 34.402 1.616 1 + 46468 22361 31111 31854 54440 54440 0.0343835863395725 PLNYYMHCLC 10 Unmodified _PLNYYMHCLC_ 0 0 0 REV__ENSG00000184571|ENST00000616349|PIWIL3 REV__ENSG00000184571|ENST00000616349|PIWIL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5136413574219 3 419.513545 1255.51881 0.13506 5.6659E-05 1.0201 0.00042796 1.1552 0.00048461 419.51374362916147 46.713 0.16774 46.713 46.631 46.799 0 15 7 3 0 0 0 0.72196 1 25568 25568 0.15932 0.064481 1 1564300 + 46469 23425 31112 31855 54441 54441 -0.09873220386543835 PLPCPLLSFS 10 Unmodified _PLPCPLLSFS_ 0 0 0 ENST00000546388.1_1_12:56708586-56708889:-|nuORF ENST00000546388.1_1_12:56708586-56708889:-|nuORF ENST00000546388.1_1_12:56708586-56708889:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2879028320312 2 537.288628 1072.5627 1.1119 0.00059743 -1.4549 -0.00078167 -0.34292 -0.00018425 537.2870058089601 87.916 2.3872 81.74 80.037 82.424 -6.1757 343 131 5 0 0 0 0.39779 1 57372 57372 21.747 0 1 304550000 46470 15105 31113 31856 54442 54442 0.02932455373729681 PLPELDPLF 9 Unmodified _PLPELDPLF_ 0 0 0 ENSG00000090565|ENST00000262305|RAB11FIP3;nc|ENSG00000090565|O75154-3|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 ENSG00000090565|ENST00000262305|RAB11FIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7877807617188 2 520.786776 1039.559 0.38936 0.00020277 0.83337 0.00043401 1.2227 0.00063678 520.7870097593723 88.539 0.51566 88.539 88.264 88.78 0 61 26 3 0 0 0 0.14602 1 48927 48927 28.487 0 1 1974800 46471 1562 31114 31857 54443 54443 0.04080108871517041 PLPEPLPF 8 Unmodified _PLPEPLPF_ 0 0 0 REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF REV__ENST00000334062.7_1_13:114748460-114748754:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 455.2582092285156 2 455.257654 908.500755 NaN NaN NaN NaN NaN NaN NaN 93.004 1 86.828 86.328 87.328 -6.1757 0 0 0 0.43098 1 61529 61529 49.669 0 1 + 46472 25625 31115 31858 54444 54444 0.042844720169114225 PLPESVPVF 9 Unmodified _PLPESVPVF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7740478515625 2 492.773668 983.532783 -0.090149 -4.4423E-05 0.6457 0.00031818 0.55555 0.00027376 492.77381112096293 78.433 0.46004 77.947 77.705 78.165 -0.48596 36 20 3 0 0 0 0.019979 1 42936 42936 63.563 44.124 1 1879400 46473 10168 31116 31859 54445 54445 0.040358397000545665 PLPESVPVF 9 Unmodified _PLPESVPVF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2422485351562 2 492.773668 983.532783 0.84958 0.00041865 -0.70885 -0.0003493 0.14073 6.9348E-05 492.77329553120654 85.79 0.40717 79.614 79.462 79.87 -6.1757 31 22 2 0 0 0 0.0081063 1 56431 56431 93.883 40.308 1 11273000 46474 10168 31116 31859 54446 54446 0.040358397000545665 PLPESVPVF 9 Unmodified _PLPESVPVF_ 0 0 0 ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B ENSG00000198837|ENST00000361217|DENND4B MSMS AL20221201_MKP_PDAC_01 4 492.7728271484375 2 492.773668 983.532783 NaN NaN NaN NaN NaN NaN NaN 85.609 1 79.433 78.933 79.933 -6.1757 0 0 0 0.036587 1 56394 56394 63.563 25.412 1 46475 10168 31116 31859 54447 54447 0.040358397000545665 PLPHIAVL 8 Unmodified _PLPHIAVL_ 0 0 0 nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6 nc|ENSG00000162591|O75095-2|MEGF6 nc|ENSG00000162591|O75095-2|MEGF6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7334289550781 2 430.273638 858.532724 0.3871 0.00016656 -0.085644 -3.685E-05 0.30146 0.00012971 430.2736598741654 67.664 0.43532 67.682 67.435 67.87 0.018028 33 21 2 0 0 0 8.7369 1 37229 37229 6.3541 0 1 4741600 46476 6876 31117 31860 54448 54448 0.09779884490706081 PLPHLHPL 8 Unmodified _PLPHLHPL_ 0 0 0 REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2763366699219 2 462.276712 922.538872 0.54487 0.00025188 0.29127 0.00013465 0.83614 0.00038653 462.2767594536485 48.059 0.46002 48.021 47.743 48.203 -0.038647 56 22 3 0 0 0 0.70131 1 25837 25837 17.087 0 1 10295000 + 46477 26196 31118 31861 54449 54449 0.0745040272222468 PLPHLHPL 8 Unmodified _PLPHLHPL_ 0 0 0 REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2761535644531 2 462.276712 922.538872 0.40174 0.00018572 0.058527 2.7056E-05 0.46027 0.00021277 462.27679201356443 51.92 0.37439 46.186 46.019 46.393 -5.7345 34 25 2 0 0 0 0.5245 2 32662 32662;32818 32.454 0 1 48956000 + 46478 26196 31118 31861 54450;54451 54450 0.0745040272222468 PLPHLHPL 8 Unmodified _PLPHLHPL_ 0 0 0 REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF REV__ENST00000375151.4_1_X:54470983-54471202:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.7434387207031 2 462.276712 922.538872 0.40174 0.00018572 0.058527 2.7056E-05 0.46027 0.00021277 462.27679201356443 51.92 0.37439 46.186 46.019 46.393 -5.7345 34 25 2 0 0 0 8.7369 1 32635 32635 6.3541 0 1 48956000 + 46479 26196 31118 31861 54452 54452 0.0745040272222468 PLPHPLLLL 9 Unmodified _PLPHPLLLL_ 0 0 0 REV__ENST00000303305.10_1_12:56506693-56506738:+|nuORF REV__ENST00000303305.10_1_12:56506693-56506738:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7567138671875 2 506.83132 1011.64809 1.6191 0.00082063 0.2298 0.00011647 1.8489 0.0009371 506.83134020510346 100.86 0.16216 94.685 94.635 94.798 -6.1757 15 9 2 0 0 0 0.034575 1 67601 67601 45.75 0 1 28251000 + 46480 25351 31119 31862 54453 54453 0.14272988621712557 PLPHQRKG 8 Unmodified _PLPHQRKG_ 0 0 0 ENST00000590474.5_1_17:67411013-67501942:+|nuORF ENST00000590474.5_1_17:67411013-67501942:+|nuORF ENST00000590474.5_1_17:67411013-67501942:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.7738647460938 2 466.774868 931.535184 NaN NaN NaN NaN NaN NaN NaN 17.37 1 14.783 14.283 15.283 -2.5866 0 0 0 0.97348 1 9075 9075 5.7604 1.0044 1 46481 15684 31120 31863 54454 54454 0.06667732948380944 PLPHRGGL 8 Unmodified _PLPHRGGL_ 0 0 0 ENST00000415912.6_1_1:21544061-21544241:-|nuORF ENST00000415912.6_1_1:21544061-21544241:-|nuORF ENST00000415912.6_1_1:21544061-21544241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.7515563964844 2 423.750862 845.487171 -0.069736 -2.9551E-05 0.59174 0.00025075 0.522 0.0002212 423.7510831979055 51.563 0.31483 51.509 51.361 51.675 -0.053875 31 15 3 0 0 0 0.80232 1 27999 27999 5.2307 0 1 5670800 46482 13029 31121 31864 54455 54455 0.058246590283374644 PLPHRPPP 8 Unmodified _PLPHRPPP_ 0 0 0 ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK ENSG00000090061|ENST00000389879|CCNK ENSG00000090061|ENST00000389879|CCNK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7672729492188 2 455.766512 909.518471 0.91846 0.0004186 1.3791 0.00062854 2.2975 0.0010471 455.76695843526784 71.733 0.43673 71.772 71.557 71.994 0.039024 52 20 4 0 0 0 0.80044 1 39439 39439 6.3541 0 1 13299000 46483 1548 31122 31865 54456 54456 0.06009232062422143 PLPHTRPA 8 Unmodified _PLPHTRPA_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.7571411132812 2 444.756144 887.497735 0.58365 0.00025958 1.4687 0.00065321 2.0523 0.00091279 444.7566416738506 74.915 0.33469 74.961 74.773 75.108 0.045967 38 15 3 0 0 0 0.80975 1 41312 41312 0.79363 0 1 9774100 46484 15871 31123 31866 54457 54457 0.04948641682756261 PLPHTRPA 8 Unmodified _PLPHTRPA_ 0 0 0 ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF ENST00000608517.1_1_1:178694567-178695308:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.756144 887.497735 0.49979 0.00022228 1.4173 0.00063035 1.9171 0.00085263 444.7570624689758 74.814 0.28606 74.814 74.626 74.912 0 -0.073828 -3.9145E-05 NaN 0.79363 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 655180 46485 15871 31123 31866 0.04948641682756261 PLPKETWKF 9 Unmodified _PLPKETWKF_ 0 0 0 nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH nc|ENSG00000136250|P28039-2|AOAH nc|ENSG00000136250|P28039-2|AOAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5497436523438 3 382.54997 1144.62808 0.29382 0.0001124 1.1348 0.00043411 1.4286 0.0005465 382.55032237816346 49.106 0.22961 49.062 48.946 49.175 -0.04369 20 10 3 0 0 0 0.35911 1 26528 26528 14.405 2.1647 1 2545700 46486 4806 31124 31867 54458 54458 0.061551928911057985 PLPLLMFI 8 Unmodified _PLPLLMFI_ 0 0 0 ENST00000438189.6_1_11:67226476-67226593:+|nuORF ENST00000438189.6_1_11:67226476-67226593:+|nuORF ENST00000438189.6_1_11:67226476-67226593:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2877807617188 2 472.2879 942.561247 -0.28269 -0.00013351 0.10307 4.868E-05 -0.17961 -8.4829E-05 472.28785651177145 84.904 0.51813 84.967 84.721 85.239 0.063179 73 21 4 0 0 0 0.80975 1 47118 47118 0.79363 0 1 472240000 46487 13359 31125 31868 54459 54459 0.0876686607564352 PLPLPPDSD 9 Unmodified _PLPLPPDSD_ 0 0 0 ENSG00000158748|ENST00000289753|HTR6 ENSG00000158748|ENST00000289753|HTR6 ENSG00000158748|ENST00000289753|HTR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7410278320312 2 475.745108 949.475663 0.60834 0.00028942 -1.3389 -0.00063697 -0.73054 -0.00034755 475.7458942581727 49.445 0.62653 49.445 49.128 49.754 0 71 28 4 0 0 0 0.3554 1 27081 27081 14.582 3.4672 1 6922200 46488 6606 31126 31869 54460 54460 -0.001096275763416088 PLPLVLYF 8 Unmodified _PLPLVLYF_ 0 0 0 REV__ENST00000335565.4_2_X:144903251-144903611:+|nuORF REV__ENST00000335565.4_2_X:144903251-144903611:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.29052734375 2 481.291497 960.568441 0.8676 0.00041757 -0.92783 -0.00044655 -0.060227 -2.8987E-05 481.2910792398058 57.966 0.47955 57.9 57.573 58.053 -0.066036 31 23 2 0 0 0 0.80624 1 31439 31439 2.8892 0 1 2921300 + 46489 25637 31127 31870 54461 54461 0.08657921947690284 PLPMTVEEY 9 Unmodified _PLPMTVEEY_ 0 0 0 nc|ENSG00000090975|Q9BZ72-2|PITPNM2;nc|ENSG00000090975|Q9BZ72-3|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2;ENST00000535289.1_1_12:123518987-123519149:-|nuORF;ENST00000451868.2_1_12:123484929-123519149:-|nuORF nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7597045898438 2 539.759901 1077.50525 0.20309 0.00010962 -0.26715 -0.00014419 -0.064057 -3.4575E-05 539.7595668855575 65.802 0.42482 59.626 59.362 59.787 -6.1757 41 25 2 0 0 0 0.48152 1 42754 42754 8.5933 0 1 40975000 46490 16073 31128 31871 54462 54462 -0.030404316225030925 PLPNLSLL 8 Unmodified _PLPNLSLL_ 0 0 0 ENST00000532904.5_1_11:62444872-62445073:-|nuORF ENST00000532904.5_1_11:62444872-62445073:-|nuORF ENST00000532904.5_1_11:62444872-62445073:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7722473144531 2 433.770929 865.527304 0.19136 8.3006E-05 2.5869 0.0011221 2.7783 0.0012051 433.7718905365646 76.894 0.19427 76.894 76.734 76.928 0 15 9 2 0 0 0 0.80975 1 42727 42727 0.79363 0 1 749490 46491 14932 31129 31872 54463 54463 0.08916160908245274 PLPNLSLL 8 Unmodified _PLPNLSLL_ 0 0 0 ENST00000532904.5_1_11:62444872-62445073:-|nuORF ENST00000532904.5_1_11:62444872-62445073:-|nuORF ENST00000532904.5_1_11:62444872-62445073:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7727355957031 2 433.770929 865.527304 NaN NaN NaN NaN NaN NaN NaN 76.63 1 76.63 76.13 77.13 0 0 0 0 0.97444 1 42603 42603 0.79363 0 1 46492 14932 31129 31872 54464 54464 0.08916160908245274 PLPNTTNQQ 9 Unmodified _PLPNTTNQQ_ 0 0 0 ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM ENSG00000197299|ENST00000355112|BLM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7552185058594 2 506.756538 1011.49852 -0.074258 -3.7631E-05 -1.493 -0.00075658 -1.5672 -0.00079421 506.7558602654168 36.927 0.23321 36.949 36.836 37.07 0.021542 28 10 4 0 0 0 0.43463 1 19550 19550 10.824 1.4408 1 5065400 46493 9938 31130 31873 54465 54465 -0.006766084588662125 PLPPCWPM 8 Unmodified _PLPPCWPM_ 0 0 0 ENST00000302517.7_1_5:139060409-139060541:+|nuORF ENST00000302517.7_1_5:139060409-139060541:+|nuORF ENST00000302517.7_1_5:139060409-139060541:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.1769714355469 2 470.72461 939.434666 0.11479 5.4033E-05 -1.6775 -0.00078965 -1.5627 -0.00073562 470.7238187267653 56.915 0.37891 56.429 56.247 56.626 -0.48554 33 17 2 0 0 0 8.7369 1 30844 30844 6.3541 0.59368 1 2713700 46494 11584 31131 31874 54466 54466 -0.03747383421159611 PLPPGGHLPLL 11 Unmodified _PLPPGGHLPLL_ 0 0 0 REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF REV__ENST00000371250.3_1_1:57002717-57044912:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8372802734375 2 555.837134 1109.65972 2.5052 0.0013925 -1.1204 -0.00062278 1.3848 0.00076973 555.8364467978622 96.335 0.37106 96.327 96.134 96.505 -0.007019 40 12 4 0 0 0 0.26781 1 53597 53597 28.487 11.374 1 18293000 + 46495 26078 31132 31875 54467 54467 0.10927185645050486 PLPPGITI 8 Unmodified _PLPPGITI_ 0 0 0 REV__ENSG00000132879|ENST00000251547|FBXO44 REV__ENSG00000132879|ENST00000251547|FBXO44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5571899414062 2 404.252372 806.49019 NaN NaN NaN NaN NaN NaN NaN 35.767 1 35.792 35.292 36.292 0.024967 0 0 0 0.95201 1 18922 18922 10.183 0 1 + 46496 19889 31133 31876 54468 54468 0.0792048936248193 PLPPHPAP 8 Unmodified _PLPPHPAP_ 0 0 0 REV__ENST00000554514.1_1_14:21549058-21555515:+|nuORF REV__ENST00000554514.1_1_14:21549058-21555515:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 413.2357177734375 2 413.234513 824.454474 NaN NaN NaN NaN NaN NaN NaN 40.25 1 35.721 35.221 36.221 -4.5294 0 0 0 0.78208 1 24016 24016 24.21 0 1 + 46497 28752 31134 31877 54469 54469 0.03522451905462276 PLPPLSFLN 9 Unmodified _PLPPLSFLN_ 0 0 0 REV__ENSG00000100379|ENST00000403888|KCTD17 REV__ENSG00000100379|ENST00000403888|KCTD17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2888793945312 2 499.289485 996.564418 NaN NaN NaN NaN NaN NaN NaN 21.472 1 21.486 20.986 21.986 0.013796 0 0 0 0.67877 1 10997 10997 10.074 0.6908 1 + 46498 18056 31135 31878 54470 54470 0.06599832453980525 PLPPMLLLLL 10 Unmodified _PLPPMLLLLL_ 0 0 0 ENSG00000115616|ENST00000233969|SLC9A2 ENSG00000115616|ENST00000233969|SLC9A2 ENSG00000115616|ENST00000233969|SLC9A2 MSMS AL20221201_MKP_PDAC_01 4 560.3662719726562 2 560.364139 1118.71372 NaN NaN NaN NaN NaN NaN NaN 108.13 1 101.96 101.46 102.46 -6.1757 0 0 0 1.0061 1 72281 72281 0 0 1 46499 3146 31136 31879 54471 54471 0.15911641752427386 PLPPPFPILI 10 Unmodified _PLPPPFPILI_ 0 0 0 ENST00000553116.5_1_12:56380664-56380745:+|nuORF ENST00000553116.5_1_12:56380664-56380745:+|nuORF ENST00000553116.5_1_12:56380664-56380745:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3477172851562 2 552.346803 1102.67905 1.3911 0.00076835 0.058071 3.2076E-05 1.4491 0.00080043 552.3467167611087 101.04 0.12717 94.86 94.78 94.907 -6.1757 15 6 3 0 0 0 0.22102 1 67715 67715 32.117 0 1 60387000 46500 15186 31137 31880 54472 54472 0.1318214193595395 PLPPPPAF 8 Unmodified _PLPPPPAF_ 0 0 0 nc|ENSG00000179111|Q9BYE0|HES7;ENSG00000179111|ENST00000541682|HES7 nc|ENSG00000179111|Q9BYE0|HES7 nc|ENSG00000179111|Q9BYE0|HES7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2350769042969 2 418.239264 834.463976 NaN NaN NaN NaN NaN NaN NaN 54.633 1 54.566 54.066 55.066 -0.066936 0 0 0 0.9706 1 29674 29674 6.3541 0 1 46501 8811 31138 31881 54473 54473 0.04012220190986682 PLPPPVKL 8 Unmodified _PLPPPVKL_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.7840576171875 2 430.783839 859.553125 0.4366 0.00018808 -0.35026 -0.00015089 0.086336 3.7192E-05 430.7836150612281 59.337 0.38624 59.284 59.093 59.479 -0.053059 55 19 4 0 0 0 0.28922 2 32281 32281;32390 56.541 0 1 108310000 + 46502 19721 31139 31882 54474;54475 54474 0.11773055150513301 PLPPPVKL 8 Unmodified _PLPPPVKL_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.7846374511719 2 430.783839 859.553125 0.36118 0.00015559 0.12339 5.3156E-05 0.48457 0.00020875 430.78385279835425 84.806 1.1013 78.631 77.837 78.938 -6.1757 161 63 3 0 0 0 0.21786 5 55451 55451;55587;55724;55850;55987 67.035 0 1 167610000 + 46503 19721 31139 31882 54476;54477;54478;54479;54480 54476 0.11773055150513301 PLPPPVKL 8 Unmodified _PLPPPVKL_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.2443542480469 2 430.783839 859.553125 0.36118 0.00015559 0.12339 5.3156E-05 0.48457 0.00020875 430.78385279835425 84.806 1.1013 78.631 77.837 78.938 -6.1757 161 63 3 0 0 0 8.7369 1 55367 55367 26.341 0 1 167610000 + 46504 19721 31139 31882 54481 54481 0.11773055150513301 PLPQGDMDL 9 Unmodified _PLPQGDMDL_ 0 0 0 ENST00000244496.5_1_6:42996985-42997015:+|nuORF ENST00000244496.5_1_6:42996985-42997015:+|nuORF ENST00000244496.5_1_6:42996985-42997015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2354736328125 2 493.236593 984.458632 0.30533 0.0001506 0.43646 0.00021528 0.74179 0.00036588 493.23648782152526 59.317 0.22432 59.317 59.241 59.465 0 13 9 2 0 0 0 0.30562 1 33057 33057 16.942 3.4344 1 1710000 46505 11117 31140 31883 54482 54482 -0.034218714537814776 PLPQGGSW 8 Unmodified _PLPQGGSW_ 0 0 0 REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF REV__ENST00000528896.6_1_17:26941527-26941671:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 843.4251098632812 1 841.420279 840.413003 0.87092 0.00073281 -0.47294 -0.00039794 0.39798 0.00033487 841.4198826053466 59.766 0.72342 53.651 53.452 54.175 -6.1147 92 39 3 0 0 0 0.6895 1 38398 38398 18.135 1.1927 1 92923000 + 46506 28415 31141 31884 54483 54483 -0.013587288538587927 PLPRVKAETYH 11 Unmodified _PLPRVKAETYH_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5789489746094 3 437.5787 1309.71427 0.27527 0.00012045 -0.11316 -4.9517E-05 0.16211 7.0936E-05 437.5785647323621 26.091 0.35487 23.14 23.003 23.358 -2.9511 43 20 3 0 0 0 0.44612 1 14434 14434 19.144 2.0954 1 12563000 46507 8577 31142 31885 54484 54484 0.07180152725800326 PLPSDISLL 9 Unmodified _PLPSDISLL_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7794494628906 2 477.778951 953.543348 0.54048 0.00025823 1.033 0.00049355 1.5735 0.00075178 477.77939228980915 74.169 0.48239 74.169 73.945 74.428 0 36 22 2 0 0 0 0.14602 1 41272 41272 28.487 3.813 1 1135200 46508 10553 31143 31886 54485 54485 0.06471822354478718 PLPSDISLL 9 Unmodified _PLPSDISLL_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 477.778951 953.543348 0.83368 0.00039832 2.6527 0.0012674 3.4864 0.0016657 477.7806294289721 74.648 0.42255 74.173 73.954 74.376 -0.47588 0.0016959 0.0012762 NaN 28.487 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 1619300 46509 10553 31143 31886 0.06471822354478718 PLPSFDWRP 9 Unmodified _PLPSFDWRP_ 0 0 0 REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3328857421875 2 557.787641 1113.56073 0.87246 0.00048665 1.1838 0.0006603 2.0562 0.0011469 557.7885952735276 64.952 0.42093 64.952 64.697 65.118 7.6294E-06 26 20 2 0 0 0 0.20727 1 35623 35623 7.9102 0.62092 1 1722300 + 46510 25653 31144 31887 54486 54486 0.008491626801287566 PLPSGSPLFY 10 Unmodified _PLPSGSPLFY_ 0 0 0 REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2859497070312 2 539.2844 1076.55425 NaN NaN NaN NaN NaN NaN NaN 87.418 1 87.418 86.918 87.918 0 0 0 0 0.91523 1 48407 48407 7.2892 0.93513 1 + 46511 28669 31145 31888 54487 54487 0.01903224728744135 PLPSGSPLFY 10 Unmodified _PLPSGSPLFY_ 0 0 0 REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF REV__ENST00000547260.5_1_12:49168067-49168277:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2869873046875 2 539.2844 1076.55425 NaN NaN NaN NaN NaN NaN NaN 91.392 1 91.392 90.892 91.892 0 0 0 0 0.91523 1 50544 50544 7.2892 0.93513 1 + 46512 28669 31145 31888 54488 54488 0.01903224728744135 PLPSHPFPESL 11 Unmodified _PLPSHPFPESL_ 0 0 0 REV__ENST00000484693.1_1_6:30709216-30709507:-|nuORF REV__ENST00000484693.1_1_6:30709216-30709507:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5480346679688 3 407.548518 1219.62372 NaN NaN NaN NaN NaN NaN NaN 21.655 1 21.655 21.155 22.155 0 0 0 0 0.94165 1 10973 10973 0.45452 0 1 + 46513 27755 31146 31889 54489 54489 0.022696836775139673 PLPSQPFQRQ 10 Unmodified _PLPSQPFQRQ_ 0 0 0 nc|ENSG00000151079|P17658|KCNA6 nc|ENSG00000151079|P17658|KCNA6 nc|ENSG00000151079|P17658|KCNA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8831481933594 3 399.884012 1196.63021 NaN NaN NaN NaN NaN NaN NaN 27.562 1 27.516 27.016 28.016 -0.046408 0 0 0 0.94014 1 14208 14208 3.3196 0.3244 1 46514 16269 31147 31890 54490 54490 0.03975621628887893 PLPSQSKL 8 Unmodified _PLPSQSKL_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2585144042969 2 435.258185 868.501818 0.85432 0.00037185 1.2088 0.00052613 2.0631 0.00089798 435.2586678397054 28.72 0.86804 25.572 25.022 25.89 -3.1482 105 45 3 0 0 0 0.36356 2 15786 15786;16166 48.346 0 1 66045000 + 46515 19635 31148 31891 54491;54492 54491 0.06230686385822537 PLPSRLGLLL 10 Unmodified _PLPSRLGLLL_ 0 0 0 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 ENSG00000115596|ENST00000233948|WNT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2391662597656 3 360.237615 1077.69102 1.5648 0.0005637 0.29424 0.000106 1.8591 0.0006697 360.2375552444561 39.282 0.33023 34.831 34.599 34.929 -4.4509 37 20 2 0 0 0 0.55245 1 23265 23265 13.615 0 1 14203000 46516 3142 31149 31892 54493 54493 0.15527758679149883 PLPSRRAHSL 10 Unmodified _PLPSRRAHSL_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3311767578125 2 567.330539 1132.64652 1.5571 0.00088339 -0.010614 -6.0217E-06 1.5465 0.00087737 567.3300944441074 81.311 1.2502 81.371 80.992 82.242 0.059929 92 49 3 0 0 0 0.69126 1 45109 45109 7.2892 7.2892 1 3888900 46517 5033 31150 31893 54494 54494 0.0855074758567298 PLPSRRTP 8 Unmodified _PLPSRRTP_ 0 0 0 ENST00000519651.5_2_8:143352450-143353011:-|nuORF ENST00000519651.5_2_8:143352450-143353011:-|nuORF ENST00000519651.5_2_8:143352450-143353011:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2744445800781 2 462.274701 922.534849 1.5143 0.00070004 0.024128 1.1154E-05 1.5385 0.00071119 462.27436154947065 81.376 0.74759 81.436 81.138 81.885 0.059929 42 28 2 0 0 0 0.80975 1 45015 45015 0.79363 0 1 1647300 46518 14711 31151 31894 54495 54495 0.07048313228528968 PLPTDGSVF 9 Unmodified _PLPTDGSVF_ 0 0 0 ENST00000563857.1_1_16:2314061-2314644:-|nuORF ENST00000563857.1_1_16:2314061-2314644:-|nuORF ENST00000563857.1_1_16:2314061-2314644:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7406311035156 2 466.739825 931.465098 0.20042 9.3544E-05 0.4646 0.00021685 0.66502 0.00031039 466.74003366143324 27.97 0.32657 27.999 27.862 28.188 0.029564 21 12 2 0 0 0 0.30562 1 14516 14516 16.942 0 1 6151000 46519 15371 31152 31895 54496 54496 -0.003376102307470319 PLPTHTTAF 9 Unmodified _PLPTHTTAF_ 0 0 0 nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC nc|ENSG00000081237|P08575-8|PTPRC nc|ENSG00000081237|P08575-8|PTPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7610473632812 2 492.761092 983.507631 0.16008 7.8881E-05 -0.62747 -0.00030919 -0.46739 -0.00023031 492.76081753383204 79.052 0.39946 79.052 78.829 79.229 0 40 18 3 0 0 0 0.37804 1 43953 43953 13.508 0.97634 1 914020 46520 1321 31153 31896 54497 54497 0.0152178489746575 PLPTPEGL 8 Unmodified _PLPTPEGL_ 0 0 0 REV__ENSG00000164061|ENST00000296452|BSN REV__ENSG00000164061|ENST00000296452|BSN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8564758300781 2 412.231636 822.448719 NaN NaN NaN NaN NaN NaN NaN 65.682 1 65.682 65.182 66.182 0 0 0 0 0.95201 1 36633 36633 10.183 0 1 + 46521 21856 31154 31897 54498 54498 0.030393086031608618 PLPVPGLL 8 Unmodified _PLPVPGLL_ 0 0 0 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2634582519531 2 403.262739 804.510926 1.479 0.00059644 -0.20482 -8.2595E-05 1.2742 0.00051385 403.26257999168286 96.597 0.35191 90.421 90.253 90.605 -6.1757 59 20 4 0 0 0 0.80044 1 63949 63949 6.3541 0 1 253320000 46522 9637 31155 31898 54499 54499 0.10085079742145808 PLQDAELAL 9 Unmodified _PLQDAELAL_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-3|TTC39C ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2661743164062 2 485.266207 968.517862 0.46906 0.00022762 -0.41162 -0.00019975 0.057434 2.7871E-05 485.2659908528649 66.746 0.36636 66.746 66.512 66.878 0 42 16 3 0 0 0 0.013041 1 37250 37250 71.922 3.8416 1 6689300 46523 7732 31156 31899 54500 54500 0.03234347832028561 PLQDAELAL 9 Unmodified _PLQDAELAL_ 0 0 0 ENSG00000168234|ENST00000317571|TTC39C;nc|ENSG00000168234|Q8N584-3|TTC39C ENSG00000168234|ENST00000317571|TTC39C ENSG00000168234|ENST00000317571|TTC39C MSMS AL20221201_MKP_PDAC_01 4 485.2659912109375 2 485.266207 968.517862 NaN NaN NaN NaN NaN NaN NaN 73.479 1 67.304 66.804 67.804 -6.1757 0 0 0 0.43483 1 48054 48054 18.146 4.2403 1 46524 7732 31156 31899 54501 54501 0.03234347832028561 PLQDETLDAY 10 Unmodified _PLQDETLDAY_ 0 0 0 REV__ENST00000548270.1_1_12:94034600-94035134:-|nuORF REV__ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7568969726562 2 582.774593 1163.53463 0.51905 0.00030249 3.4539 0.0020129 3.973 0.0023154 582.7763971635353 73.827 0.18373 73.827 73.738 73.922 0 10 7 2 0 0 0 0.23489 1 41061 41061 8.7454 1.4562 1 388570 + 46525 22552 31157 31900 54502 54502 -0.040591960726715115 PLQDQSLF 8 Unmodified _PLQDQSLF_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2744140625 2 474.245275 946.475997 0.14195 6.7318E-05 0.96205 0.00045625 1.104 0.00052357 474.2457745367022 61.882 0.22225 61.882 61.821 62.044 0 15 9 2 0 0 0 8.7369 1 34581 34581 32.117 3.6301 1 1076200 + 46526 22004 31158 31901 54503 54503 0.0006179214352641793 PLQDVFLRL 9 Unmodified _PLQDVFLRL_ 0 0 0 ENST00000515762.5_1_5:10450206-10461489:+|nuORF ENST00000515762.5_1_5:10450206-10461489:+|nuORF ENST00000515762.5_1_5:10450206-10461489:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8886413574219 3 367.553603 1099.63898 0.216 7.9392E-05 1.0505 0.00038611 1.2665 0.0004655 367.553943613995 40.942 0.42679 40.94 40.689 41.115 -0.0017929 31 20 2 0 0 0 0.54444 1 21789 21789 2.7352 0.82882 1 4151100 46527 14670 31159 31902 54504 54504 0.09314595265368553 PLQGEPPT 8 Unmodified _PLQGEPPT_ 0 0 0 ENST00000556973.1_1_14:102198142-102198797:+|nuORF ENST00000556973.1_1_14:102198142-102198797:+|nuORF ENST00000556973.1_1_14:102198142-102198797:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.4325561523438 1 838.430509 837.423233 -0.0051747 -4.3386E-06 1.1878 0.00099587 1.1826 0.00099154 838.4317628049538 81.683 0.22242 81.683 81.559 81.782 0 16 12 2 0 0 0 0.80143 1 45306 45306 5.7604 0 1 405950 46528 15249 31160 31903 54505 54505 -0.0019816591928929483 PLQHPHEYLY 10 Unmodified _PLQHPHEYLY_ 0 0 0 ENST00000474436.1_1_9:35093318-35095562:-|nuORF;ENST00000465745.6_1_9:35093318-35093600:-|nuORF ENST00000474436.1_1_9:35093318-35095562:-|nuORF ENST00000474436.1_1_9:35093318-35095562:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.885498046875 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 50.899 1 50.899 50.399 51.399 0 0 0 0 0.99897 1 28081 28081 0.77653 0 1 46529 13938 31161 31904 54506 54506 -0.006117980909493781 PLQHRHVL 8 Unmodified _PLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2961730957031 2 500.295968 998.577383 NaN NaN NaN NaN NaN NaN NaN 17.489 1 17.502 17.002 18.002 0.013865 0 0 0 0.4236 1 8700 8700 50.855 12.704 1 46530 7612 31162 31905 54507 54507 0.07803708356743755 PLQHRHVL 8 Unmodified _PLQHRHVL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2964477539062 2 500.295968 998.577383 1.1207 0.00056068 -0.69159 -0.000346 0.4291 0.00021468 500.2956251289281 19.39 0.23801 16.734 16.612 16.85 -2.6564 30 22 2 0 0 0 0.069468 1 10250 10250 123.1 52.381 1 6925600 46531 7612 31162 31905 54508 54508 0.07803708356743755 PLQKETHKL 9 Unmodified _PLQKETHKL_ 0 0 0 NCAPD2|p.Q455H|1|0.17|ENSG00000010292|chr12:6517640-6517640|G/T|missense_variant NCAPD2|p.Q455H|1|0.17|ENSG00000010292|chr12:6517640-6517640|G/T|missense_variant NCAPD2|p.Q455H|1|0.17|ENSG00000010292|chr12:6517640-6517640|G/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.2060241699219 3 365.216991 1092.62914 0.98827 0.00036093 0.16187 5.9118E-05 1.1501 0.00042005 365.217026373367 17.126 0.28768 14.539 14.405 14.693 -2.5866 161 51 4 0 0 0 0.209 1 9003 9003 7.609 0.31972 1 43863000 46532 16666 31163 31906 54509 54509 0.0865340725997612 PLQMLRCLY 9 Unmodified _PLQMLRCLY_ 0 0 0 ENST00000469632.1_1_3:3170712-3173035:+|nuORF;ENST00000465998.1_1_3:3170712-3170940:+|nuORF ENST00000469632.1_1_3:3170712-3173035:+|nuORF ENST00000469632.1_1_3:3170712-3173035:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8014526367188 2 568.80138 1135.58821 0.33328 0.00018957 1.6774 0.00095409 2.0107 0.0011437 568.802061159873 60.067 0.24129 59.577 59.411 59.652 -0.49079 29 11 3 0 0 0 0.18465 1 32645 32645 24.674 6.5275 1 10615000 46533 13747 31164 31907 54510 54510 0.025836066245119582 PLQPERFAA 9 Unmodified _PLQPERFAA_ 0 0 0 REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7796630859375 2 514.779816 1027.54508 -0.15152 -7.7997E-05 0.050676 2.6087E-05 -0.10084 -5.1911E-05 514.779773948995 23.406 0.20304 23.406 23.326 23.529 0 12 9 2 0 0 0 0.49272 1 11944 11944 7.9102 7.9102 1 406590 + 46534 27038 31165 31908 54511 54511 0.03240876163090434 PLQPRFMAL 9 Unmodified _PLQPRFMAL_ 0 0 0 ENST00000319540.8_1_4:83552326-83552455:-|nuORF ENST00000319540.8_1_4:83552326-83552455:-|nuORF ENST00000319540.8_1_4:83552326-83552455:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8040161132812 2 536.802237 1071.58992 3.9246 0.0021067 -1.4226 -0.00076364 2.502 0.0013431 536.8014553259355 98.576 0.20623 98.548 98.404 98.61 -0.028282 19 7 3 0 0 0 0.37804 1 54754 54754 13.508 0.97634 1 1122400 46535 11759 31166 31909 54512 54512 0.05698983704769489 PLQSCVKPPY 10 Unmodified _PLQSCVKPPY_ 0 0 0 nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG849|O42043|ERVK-18_env;nc|ENSG819|P61567|ERVK-7_env;nc|ENSG815|Q902F8|ERVK-8_env;nc|ENSG825|Q69384|ERVK-6_env;nc|ENSG840|P61565|ERVK-21_env;nc|ENSG811|Q9UKH3|ERVK-9_env;nc|ENSG833|P61570|ERVK-25_env;HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|121|2|sense;nc|ENSG836|P61566|ERVK-24_env;nc|ENSG802|Q902F9|HERVK_113_env nc|ENSG821|P63135|ERVK-7_pol nc|ENSG821|P63135|ERVK-7_pol MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2954711914062 2 566.296985 1130.57942 -0.58531 -0.00033146 -0.60341 -0.00034171 -1.1887 -0.00067317 566.2960459344818 77.995 0.25248 77.512 77.456 77.709 -0.4826 25 20 2 0 0 0 0.52888 1 42711 42711 14.838 2.5976 1 2370400 46536 16657 31167 31910 54513 54513 0.019349562596744363 PLQSCVKPPY 10 Unmodified _PLQSCVKPPY_ 0 0 0 nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG849|O42043|ERVK-18_env;nc|ENSG819|P61567|ERVK-7_env;nc|ENSG815|Q902F8|ERVK-8_env;nc|ENSG825|Q69384|ERVK-6_env;nc|ENSG840|P61565|ERVK-21_env;nc|ENSG811|Q9UKH3|ERVK-9_env;nc|ENSG833|P61570|ERVK-25_env;HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|121|2|sense;nc|ENSG836|P61566|ERVK-24_env;nc|ENSG802|Q902F9|HERVK_113_env nc|ENSG821|P63135|ERVK-7_pol nc|ENSG821|P63135|ERVK-7_pol MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 566.296985 1130.57942 0.3841 0.00021752 -0.6308 -0.00035722 -0.2467 -0.00013971 566.2963411745172 77.472 0.23367 77.522 77.395 77.629 0.05011 0.0048237 -2.2471E-05 NaN 14.838 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1357800 46537 16657 31167 31910 0.019349562596744363 PLQSFLHLIVL 11 Unmodified _PLQSFLHLIVL_ 0 0 0 REV__ENST00000533865.5_1_11:88068195-88070878:-|nuORF REV__ENST00000533865.5_1_11:88068195-88070878:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2432861328125 3 427.263941 1278.76999 0.61874 0.00026436 1.2069 0.00051568 1.8257 0.00078004 427.5989803980361 51.404 0.45142 51.404 51.109 51.561 0 34 20 2 0 0 0 0.30073 1 28356 28356 7.4771 3.6007 1 2246200 + 46538 28428 31168 31911 54514 54514 0.14175985913402656 PLQSLPFSTS 10 Unmodified _PLQSLPFSTS_ 0 0 0 REV__ENST00000562303.5_1_15:41810158-41810488:-|nuORF REV__ENST00000562303.5_1_15:41810158-41810488:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7850952148438 2 538.784764 1075.55498 0.53178 0.00028651 2.6824 0.0014452 3.2142 0.0017318 538.7849160539183 66.987 0.55421 60.811 60.537 61.091 -6.1757 59 30 3 0 0 0 0.40136 1 43696 43696 21.537 1.0834 1 21285000 + 46539 28856 31169 31912 54515 54515 0.020220193778186513 PLQVFPKR 8 Unmodified _PLQVFPKR_ 0 0 0 REV__ENST00000316334.4_1_13:28155715-28155751:-|nuORF REV__ENST00000316334.4_1_13:28155715-28155751:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.8039855957031 2 492.803094 983.591636 1.0695 0.00052704 0.64716 0.00031892 1.7166 0.00084597 492.8035961408246 50.515 0.38985 44.976 44.808 45.198 -5.5391 53 24 3 0 0 0 0.72953 1 31845 31845 14.582 1.0738 1 59233000 + 46540 25471 31170 31913 54516 54516 0.09918360785036384 PLQWGPGA 8 Unmodified _PLQWGPGA_ 0 0 0 REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF REV__ENST00000304842.5_1_7:65670295-65705388:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2659912109375 2 413.216321 824.418088 NaN NaN NaN NaN NaN NaN NaN 96.392 1 96.392 95.892 96.892 0 0 0 0 0.97444 1 53268 53268 0.79363 0.10326 1 + 46541 25361 31171 31914 54517 54517 -0.0011442499124996175 PLRASDPFI 9 Unmodified _PLRASDPFI_ 0 0 0 REV__ENSG00000176009|ENST00000531618|ASCL3 REV__ENSG00000176009|ENST00000531618|ASCL3 MSMS AL20221201_MKP_PDAC_01 4 508.2780151367188 2 508.282192 1014.54983 NaN NaN NaN NaN NaN NaN NaN 94.015 1 87.839 87.339 88.339 -6.1757 0 0 0 0.36554 1 62262 62262 21.747 5.8995 1 + 46542 22903 31172 31915 54518 54518 0.04313760305853975 PLRCPAGK 8 Unmodified _PLRCPAGK_ 0 0 0 REV__ENSG00000112706|ENST00000369950|IMPG1 REV__ENSG00000112706|ENST00000369950|IMPG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2257690429688 2 421.239273 840.463992 -0.02882 -1.214E-05 -0.56856 -0.0002395 -0.59738 -0.00025164 421.2399743232632 35.055 0.19095 35.083 34.973 35.164 0.027401 10 8 2 0 0 0 8.7369 1 18510 18510 2.5775 0 1 458890 + 46543 18832 31173 31916 54519 54519 0.03737896919335526 PLRDPLPDPL 10 Unmodified _PLRDPLPDPL_ 0 0 0 ENSG00000168878|ENST00000519937|SFTPB ENSG00000168878|ENST00000519937|SFTPB ENSG00000168878|ENST00000519937|SFTPB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.7175598144531 3 378.21688 1131.62881 -0.76446 -0.00028913 1.3879 0.00052491 0.62341 0.00023578 378.216860185996 33.018 0.24065 33.018 32.889 33.13 0 15 11 2 0 0 0 0.23767 1 17348 17348 3.5871 0.85186 1 2317700 46544 7806 31174 31917 54520 54520 0.06825987540150891 PLREAALL 8 Unmodified _PLREAALL_ 0 0 0 REV__ENST00000318782.8_1_16:3019292-3019526:+|nuORF REV__ENST00000318782.8_1_16:3019292-3019526:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.7752990722656 2 441.774003 881.533452 NaN NaN NaN NaN NaN NaN NaN 101.82 1 95.646 95.146 96.146 -6.1757 0 0 0 0.4392 1 68350 68350 48.346 6.5286 1 + 46545 25486 31175 31918 54521 54521 0.08794679139748496 PLRFYNSRRLR 11 Unmodified _PLRFYNSRRLR_ 0 0 0 REV__nc|ENSG00000197614|Q13361-2|MFAP5 REV__nc|ENSG00000197614|Q13361-2|MFAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2882995605469 3 493.288143 1476.8426 1.2124 0.00059805 -0.62579 -0.0003087 0.58659 0.00028936 493.2878122048803 63.907 0.34127 63.896 63.695 64.037 -0.010532 51 16 4 0 0 0 0.71503 1 34940 34940 2.8433 0 1 11502000 + 46546 23947 31176 31919 54522 54522 0.12325132759519875 PLRFYNSRRLR 11 Unmodified _PLRFYNSRRLR_ 0 0 0 REV__nc|ENSG00000197614|Q13361-2|MFAP5 REV__nc|ENSG00000197614|Q13361-2|MFAP5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 493.288143 1476.8426 0.83932 0.00041402 -0.77809 -0.00038382 0.061224 3.0201E-05 493.6220704337437 64.353 0.19315 63.868 63.821 64.014 -0.48512 -0.013871 -0.00018533 NaN 2.8433 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 776350 + 46547 23947 31176 31919 0.12325132759519875 PLRGELSALF 10 Unmodified _PLRGELSALF_ 0 0 0 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 REV__nc|ENSG00000198003|A5D8V7-2|ODAD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.8731079101562 3 368.213358 1101.61824 1.7744 0.00065337 1.0836 0.00039898 2.858 0.0010524 368.21361996894467 21.692 0.20907 18.957 18.844 19.054 -2.7348 15 10 2 0 0 0 0.23723 1 11613 11613 3.8763 0 1 1694400 + 46548 23979 31177 31920 54523 54523 0.07150004885670569 PLRHWDSKGR 10 Unmodified _PLRHWDSKGR_ 0 0 0 REV__ENST00000449946.5_1_15:43885850-43886314:+|nuORF REV__ENST00000449946.5_1_15:43885850-43886314:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.8957214355469 3 417.895022 1250.66324 NaN NaN NaN NaN NaN NaN NaN 21.477 1 18.742 18.242 19.242 -2.7348 0 0 0 0.97592 1 11509 11509 1.5923 0 1 + 46549 27192 31178 31921 54524 54524 0.04793248471582956 PLRLKELKI 9 Unmodified _PLRLKELKI_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF;ENSG00000188906|ENST00000298910|LRRK2 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 370.8510131835938 3 370.585015 1108.73321 1.9337 0.00071661 -0.31012 -0.00011493 1.6236 0.00060168 370.584862377138 35.945 0.28547 31.752 31.613 31.899 -4.1928 31 17 2 0 0 0 0.21144 1 20933 20933 4.1895 0 1 4786600 46550 14031 31179 31922 54525 54525 0.18319734087504003 PLRLPWCAH 9 Unmodified _PLRLPWCAH_ 0 0 0 ENST00000479967.5_1_3:127434467-127541990:-|nuORF ENST00000479967.5_1_3:127434467-127541990:-|nuORF ENST00000479967.5_1_3:127434467-127541990:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.300048828125 2 546.792204 1091.56985 0.87452 0.00047818 -0.60167 -0.00032899 0.27285 0.00014919 546.7910604992402 49.628 0.53288 49.579 49.21 49.743 -0.048824 84 26 4 0 0 0 0.46577 1 26776 26776 9.3474 0.75416 1 16489000 46551 14050 31180 31923 54526 54526 0.027732327647981947 PLRLREMRRKF 11 Unmodified _PLRLREMRRKF_ 0 0 0 ENST00000442133.8_1_10:75256199-75264836:+|nuORF ENST00000442133.8_1_10:75256199-75264836:+|nuORF ENST00000442133.8_1_10:75256199-75264836:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3038940429688 3 501.301395 1500.88236 1.0855 0.00054417 2.8464 0.0014269 3.9319 0.0019711 501.3027153373006 100.53 0.18068 100.49 100.4 100.58 -0.04216 19 6 4 0 0 0 0.73992 1 55870 55870 0.50596 0.41111 1 7049600 46552 13404 31181 31924 54527 54527 0.1519493643857004 PLRQKAMF 8 Unmodified _PLRQKAMF_ 0 0 0 nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000527370.5_1_11:67259506-67263940:-|nuORF nc|ENSG00000110697|O00562-2|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7810668945312 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 94.242 1 93.822 93.322 94.322 -0.42044 0 0 0 0.97444 1 51492 51492 0.69038 0 1 46553 2731 31182 31925 54528 54528 0.052864280162452815 PLRQRWAHSEW 11 Unmodified _PLRQRWAHSEW_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1928405761719 4 367.191643 1464.73747 1.7834 0.00065485 1.3106 0.00048124 3.094 0.0011361 367.1921765544412 20.666 0.37259 17.973 17.762 18.134 -2.693 61 23 3 0 0 0 0.71618 1 10968 10968 1.1098 0 1 7209500 + 46554 24360 31183 31926 54529 54529 0.02368591563094924 PLRRALRGKS 10 Unmodified _PLRRALRGKS_ 0 0 0 ENST00000553066.5_1_12:56551506-56551743:+|nuORF ENST00000553066.5_1_12:56551506-56551743:+|nuORF ENST00000553066.5_1_12:56551506-56551743:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.3689575195312 2 577.367456 1152.72036 NaN NaN NaN NaN NaN NaN NaN 107.62 1 101.45 100.95 101.95 -6.1757 0 0 0 0.99514 1 71970 71970 1.1933 0.50296 1 46555 15185 31184 31927 54530 54530 0.15010715747962422 PLRRLSLH 8 Unmodified _PLRRLSLH_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3111877441406 2 496.311618 990.608683 0.73838 0.00036647 -0.29582 -0.00014682 0.44257 0.00021965 496.31154454053757 42.187 0.46322 37.502 37.284 37.747 -4.6846 88 29 4 0 0 0 0.63229 1 25605 25605 23.148 0 1 151100000 46556 457 31185 31928 54531 54531 0.11300281390845157 PLRRPDWRIYH 11 Unmodified _PLRRPDWRIYH_ 0 0 0 ENST00000448257.6_1_10:62538265-62539917:+|nuORF ENST00000448257.6_1_10:62538265-62539917:+|nuORF ENST00000448257.6_1_10:62538265-62539917:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.8120422363281 3 503.612626 1507.81605 0.66549 0.00033515 -0.49194 -0.00024775 0.17355 8.7403E-05 503.61251601787575 43.769 0.31094 39.004 38.843 39.153 -4.7648 49 19 3 0 0 0 0.30584 1 26693 26693 0.45452 0 1 13316000 46557 13491 31186 31929 54532 54532 0.08245443868213442 PLRRRQRQQLH 11 Unmodified _PLRRRQRQQLH_ 0 0 0 REV__ENST00000298585.2_1_9:140476760-140476931:-|nuORF REV__ENST00000298585.2_1_9:140476760-140476931:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.1912231445312 4 372.724913 1486.87055 0.98793 0.00036823 0.80253 0.00029912 1.7905 0.00066735 372.9759041778683 26.472 0.11643 23.521 23.481 23.597 -2.9511 6 5 2 0 0 0 0.30604 1 14603 14603 0.094841 0.094841 1 5206000 + 46558 25291 31187 31930 54533 54533 0.14658455739640885 PLRSLYLAS 9 Unmodified _PLRSLYLAS_ 0 0 0 ENST00000534976.5_1_12:121756302-121773353:-|nuORF ENST00000534976.5_1_12:121756302-121773353:-|nuORF ENST00000534976.5_1_12:121756302-121773353:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.7714233398438 2 510.297842 1018.58113 0.5669 0.00028929 -0.83746 -0.00042735 -0.27056 -0.00013807 510.2974031417988 60.121 0.34542 60.068 59.875 60.221 -0.053062 33 18 2 0 0 0 0.18882 1 32774 32774 15.847 0 1 13857000 46559 14962 31188 31931 54534 54534 0.07258333339927958 PLRSTIISL 9 Unmodified _PLRSTIISL_ 0 0 0 ENST00000451318.2_1_9:135645025-135645512:-|nuORF ENST00000451318.2_1_9:135645025-135645512:-|nuORF ENST00000451318.2_1_9:135645025-135645512:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3141479492188 2 500.313492 998.612431 1.4436 0.00072227 -0.3015 -0.00015085 1.1421 0.00057142 500.31320257214315 95.914 0.32565 89.738 89.552 89.877 -6.1757 47 19 3 0 0 0 0.036857 1 63466 63466 51.63 1.6968 1 74892000 46560 13517 31189 31932 54535 54535 0.1130690637405678 PLRVLHRR 8 Unmodified _PLRVLHRR_ 0 0 0 ENSG00000162927|ENST00000316752|PUS10 ENSG00000162927|ENST00000316752|PUS10 ENSG00000162927|ENST00000316752|PUS10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.8361206054688 2 523.838334 1045.66212 NaN NaN NaN NaN NaN NaN NaN 103.02 1 102.97 102.47 103.47 -0.047928 0 0 0 0.97444 1 57214 57214 0.79363 0 1 46561 6930 31190 31933 54536 54536 0.14111078893370177 PLRWCLFI 8 Unmodified _PLRWCLFI_ 0 0 0 REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2666015625 2 524.294048 1046.57354 0.33504 0.00017566 -1.6104 -0.00084431 -1.2753 -0.00066865 524.7951607620777 53.809 0.1218 53.342 53.285 53.407 -0.46664 8 5 2 0 0 0 8.7369 1 29104 29104 10.183 0 1 1054500 + 46562 21765 31191 31934 54537 54537 0.052119025386673457 PLRYSNIMIS 10 Unmodified _PLRYSNIMIS_ 0 0 0 ENSG00000162694|ENST00000370114|EXTL2 ENSG00000162694|ENST00000370114|EXTL2 ENSG00000162694|ENST00000370114|EXTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3203125 2 597.320991 1192.62743 0.63646 0.00038017 -1.6821 -0.0010047 -1.0456 -0.00062457 597.3197366956375 79.873 0.34254 73.697 73.535 73.878 -6.1757 36 20 2 0 0 0 0.50944 1 52317 52317 15.847 0 1 23646000 46563 6894 31192 31935 54538 54538 0.03882030179738649 PLSAAVPEI 9 Unmodified _PLSAAVPEI_ 0 0 0 REV__ENSG00000183760|ENST00000331256|ACP7 REV__ENSG00000183760|ENST00000331256|ACP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7579956054688 2 448.758018 895.501483 1.091 0.00048957 -0.35393 -0.00015883 0.73703 0.00033075 448.7578109940868 70.43 0.57507 64.254 63.958 64.533 -6.1757 75 31 3 0 0 0 0.016184 1 45896 45896 67.344 6.9543 1 230830000 + 46564 23375 31193 31936 54539 54539 0.04955266665945146 PLSAEVTYP 9 Unmodified _PLSAEVTYP_ 0 0 0 REV__nc|ENSG00000136068|O75369-5|FLNB REV__nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.5014038085938 1 976.498589 975.491313 0.13362 0.00013048 1.8992 0.0018546 2.0328 0.0019851 976.4998955486144 58.652 0.23329 58.652 58.535 58.768 0 24 9 3 0 0 0 0.2001 2 32627 32607;32627 23.148 0 1 1659200 + 46565 20134 31194 31937 54540;54541 54541 0.0025865894070875584 PLSAQESKSF 10 Unmodified _PLSAQESKSF_ 0 0 0 ENST00000582356.5_1_17:7123904-7124179:+|nuORF ENST00000582356.5_1_17:7123904-7124179:+|nuORF ENST00000582356.5_1_17:7123904-7124179:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.2330322265625 2 547.279846 1092.54514 0.56736 0.0003105 -4.2679 -0.0023357 -3.7005 -0.0020252 547.2798664956999 43.753 0.60213 38.988 38.618 39.22 -4.7648 153 37 5 0 0 0 0.22489 1 26379 26379 13.042 5.7532 1 185150000 46566 15571 31195 31938 54542 54542 0.002568313724395921 PLSATVMLTV 10 Unmodified _PLSATVMLTV_ 0 0 0 PCDHGA8|p.T659M|1|0.04|ENSG00000253767|chr5:141394789-141394789|C/T|missense_variant PCDHGA8|p.T659M|1|0.04|ENSG00000253767|chr5:141394789-141394789|C/T|missense_variant PCDHGA8|p.T659M|1|0.04|ENSG00000253767|chr5:141394789-141394789|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7958374023438 2 516.293911 1030.57327 1.1201 0.0005783 0.057951 2.992E-05 1.178 0.00060822 516.2942756478683 79.887 0.44326 73.711 73.464 73.908 -6.1757 53 26 3 0 0 0 0.074936 1 52277 52277 52.268 6.2474 1 21966000 46567 16684 31196 31939 54543 54543 0.05920438028147146 PLSCNENNCYF 11 Unmodified _PLSCNENNCYF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.2588500976562 2 652.25773 1302.50091 0.4226 0.00027565 0.39519 0.00025776 0.81779 0.00053341 652.2579422389693 88.39 0.24998 87.886 87.75 88 -0.50423 27 11 3 0 0 0 0.72952 1 48302 48302 1.4819 0.8804 1 699390 + 46568 20387 31197 31940 54544 54544 -0.13824264107734052 PLSCNENNCYF 11 Unmodified _PLSCNENNCYF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 652.25773 1302.50091 0.4226 0.00027565 0.39519 0.00025776 0.81779 0.00053341 652.2579422389693 88.39 0.24998 87.886 87.75 88 -0.50423 0 0 NaN 1.4819 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 699390 + 46569 20387 31197 31940 -0.13824264107734052 PLSDAFRRS 9 Unmodified _PLSDAFRRS_ 0 0 0 REV__ENST00000375866.2_1_6:31637152-31637734:+|nuORF REV__ENST00000375866.2_1_6:31637152-31637734:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.7848510742188 2 524.780348 1047.54614 NaN NaN NaN NaN NaN NaN NaN 51.841 1 46.107 45.607 46.607 -5.7345 0 0 0 0.22437 1 32661 32661 29.082 0.59474 1 + 46570 26216 31198 31941 54545 54545 0.024270905319781377 PLSDLTSVS 9 Unmodified _PLSDLTSVS_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MSMS AL20221201_MKP_PDAC_01 4 459.7434387207031 2 459.742565 917.470577 NaN NaN NaN NaN NaN NaN NaN 45.253 1 40.298 39.798 40.798 -4.9549 0 0 0 0.12337 1 27747 27747 39.957 5.8549 1 46571 16306 31199 31942 54546 54546 0.008540685610455512 PLSDQALLL 9 Unmodified _PLSDQALLL_ 0 0 0 REV__ENST00000518812.1_1_8:143624907-143625775:+|nuORF REV__ENST00000518812.1_1_8:143624907-143625775:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 970.5638427734375 1 969.561524 968.554247 0.59858 0.00058036 -1.8852 -0.0018279 -1.2866 -0.0012475 969.5592626160536 73.673 0.28079 73.197 73.018 73.299 -0.47588 19 11 2 0 0 0 0.32871 1 40275 40275 15.847 0 1 1958500 + 46572 28252 31200 31943 54547 54547 0.06871224728774905 PLSEQFQDSTC 11 Unmodified _PLSEQFQDSTC_ 0 0 0 REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH REV__nc|ENSG00000119844|Q6ULP2-7|AFTPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8506774902344 3 418.848416 1253.52342 1.4883 0.00062339 4.089 0.0017127 5.5773 0.0023361 418.84971892992553 21.136 0.13622 18.443 18.371 18.507 -2.693 10 7 2 0 0 0 0.73389 1 11307 11307 0.36667 0 1 1924300 + 46573 19215 31201 31944 54548 54548 -0.09320341438456126 PLSGPIAV 8 Unmodified _PLSGPIAV_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5|UNKL REV__nc|ENSG00000059145|Q9H9P5|UNKL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.228515625 2 377.228897 752.44324 NaN NaN NaN NaN NaN NaN NaN 55.89 1 55.822 55.322 56.322 -0.068737 0 0 0 0.97348 1 30383 30383 5.7604 2.8712 1 + 46574 17316 31202 31945 54549 54549 0.057116298113214725 PLSHDHPAD 9 Unmodified _PLSHDHPAD_ 0 0 0 REV__nc|ENSG00000150672|Q15700|DLG2 REV__nc|ENSG00000150672|Q15700|DLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7276000976562 2 494.727781 987.441008 -0.26759 -0.00013238 -0.11006 -5.4448E-05 -0.37765 -0.00018683 494.7278321395533 21.997 0.28985 21.997 21.873 22.163 0 62 27 3 0 0 0 0.39863 2 11128 11128;11226 12.532 4.6214 1 4608400 + 46575 21032 31203 31946 54550;54551 54550 -0.053214506644280846 PLSHNNRLTP 10 Unmodified _PLSHNNRLTP_ 0 0 0 ENSG00000167759|ENST00000595793|KLK13 ENSG00000167759|ENST00000595793|KLK13 ENSG00000167759|ENST00000595793|KLK13 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.2078857421875 3 383.543878 1147.60981 1.6244 0.00062303 -0.01298 -4.9786E-06 1.6114 0.00061805 383.54397979543825 96.018 0.22627 89.842 89.748 89.974 -6.1757 20 13 2 0 0 0 0.23162 1 63598 63598 7.4771 0 1 7541000 46576 7666 31204 31947 54552 54552 0.04190450969099402 PLSHRQDYELQ 11 Unmodified _PLSHRQDYELQ_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3436279296875 2 693.34404 1384.67353 0.005491 3.8071E-06 -1.0214 -0.0007082 -1.0159 -0.0007044 693.343442106256 72.375 0.4043 72.375 72.16 72.564 0 72 16 6 0 0 0 0.61059 1 40221 40221 10.8 2.0541 1 28447000 46577 6514 31205 31948 54553 54553 -0.003422333844810055 PLSHSGIDF 9 Unmodified _PLSHSGIDF_ 0 0 0 ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF ENST00000486078.1_1_1:89325774-89329699:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.7432556152344 2 486.742899 971.471246 NaN NaN NaN NaN NaN NaN NaN 37.205 1 32.922 32.422 33.422 -4.2835 0 0 0 0.080768 1 21818 21818 48.346 12.302 1 46578 14178 31206 31949 54554 54554 -0.015630919992418058 PLSISMAFMS 10 Unmodified _PLSISMAFMS_ 0 0 0 REV__ENST00000265354.5_1_6:43147153-43147468:+|nuORF REV__ENST00000265354.5_1_6:43147153-43147468:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2943725585938 2 542.264296 1082.51404 0.51594 0.00027977 -1.9739 -0.0010704 -1.4579 -0.00079058 542.263951307806 74.317 0.60568 73.841 73.504 74.11 -0.47588 50 25 3 0 0 0 0.23325 1 40541 40541 10.074 1.4806 1 1453600 + 46579 25091 31207 31950 54555 54555 -0.023917812576655706 PLSIWPRN 8 Unmodified _PLSIWPRN_ 0 0 0 REV__ENST00000480755.1_1_19:9793972-9794221:-|nuORF REV__ENST00000480755.1_1_19:9793972-9794221:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.777099609375 2 491.777077 981.5396 0.64541 0.0003174 1.1658 0.00057334 1.8113 0.00089073 491.77753079841233 78.397 0.6763 78.45 78.156 78.832 0.052452 35 27 2 0 0 0 0.80676 1 43303 43303 2.5775 0 1 1697400 + 46580 27679 31208 31951 54556 54556 0.04809197371275786 PLSIYSFPT 9 Unmodified _PLSIYSFPT_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7713012695312 2 512.771126 1023.5277 0.48077 0.00024652 -0.28787 -0.00014761 0.19289 9.8911E-05 512.770683083035 82.554 0.26338 82.059 81.919 82.182 -0.4952 28 10 3 0 0 0 0.14602 1 45156 45156 28.487 0 1 1362600 + 46581 22433 31209 31952 54557 54557 0.016875358374250027 PLSIYSFPT 9 Unmodified _PLSIYSFPT_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.771126 1023.5277 0.48077 0.00024652 -0.28787 -0.00014761 0.19289 9.8911E-05 512.770683083035 82.554 0.26338 82.059 81.919 82.182 -0.4952 0.020194 0.00077127 NaN 28.487 28 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1362600 + 46582 22433 31209 31952 0.016875358374250027 PLSIYSFPT 9 Unmodified _PLSIYSFPT_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.771126 1023.5277 2.061 0.0010568 -1.9567 -0.0010033 0.10427 5.3468E-05 512.7700424156706 81.959 0.17118 82.019 81.86 82.031 0.059929 -0.020194 -0.00094018 NaN 28.487 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2313500 + 46583 22433 31209 31952 0.016875358374250027 PLSLASAW 8 Unmodified _PLSLASAW_ 0 0 0 ENST00000318443.9_1_15:73976775-73994724:+|nuORF ENST00000318443.9_1_15:73976775-73994724:+|nuORF ENST00000318443.9_1_15:73976775-73994724:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.4561767578125 1 844.45633 843.449054 -0.042562 -3.5942E-05 0.57455 0.00048518 0.53198 0.00044924 844.456934204723 88.34 0.35366 87.835 87.602 87.956 -0.50423 26 15 2 0 0 0 0.74163 1 48353 48353 13.508 13.508 1 1429400 46584 11750 31210 31953 54558 54558 0.021067283229854183 PLSLDYKYVY 10 Unmodified _PLSLDYKYVY_ 0 0 0 REV__ENSG00000180902|ENST00000321264|D2HGDH REV__ENSG00000180902|ENST00000321264|D2HGDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.8879699707031 3 420.88854 1259.64379 NaN NaN NaN NaN NaN NaN NaN 32.333 1 32.204 31.704 32.704 -0.12915 0 0 0 0.97592 1 16832 16832 1.5923 0.63001 1 + 46585 23173 31211 31954 54559 54559 0.0243543461747322 PLSLGFHLEF 10 Unmodified _PLSLGFHLEF_ 0 0 0 ENSG00000205327|ENST00000548615|OR6C68 ENSG00000205327|ENST00000548615|OR6C68 ENSG00000205327|ENST00000548615|OR6C68 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.782958984375 2 580.310949 1158.60735 -0.0011769 -6.8299E-07 0.60376 0.00035037 0.60258 0.00034969 580.3118651388827 39.002 0.17938 38.715 38.608 38.787 -0.28687 13 7 2 0 0 0 0.22149 1 20511 20511 14.838 0 1 2990800 46586 10359 31212 31955 54560 54560 0.034386025114145014 PLSLNQTLF 9 Unmodified _PLSLNQTLF_ 0 0 0 REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.295166015625 2 516.78985 1031.56515 1.3101 0.00067706 2.7976 0.0014458 4.1078 0.0021228 516.7918069503239 96.734 0.35395 90.558 90.387 90.741 -6.1757 35 19 3 0 0 0 0.20428 1 64169 64169 22.736 3.4793 1 23970000 + 46587 27282 31213 31956 54561 54561 0.05062627103052364 PLSLSYTRV 9 Unmodified _PLSLSYTRV_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2958984375 2 518.295299 1034.57605 0.040276 2.0875E-05 0.75305 0.0003903 0.79332 0.00041118 518.2958964341072 78.807 0.29615 78.321 78.165 78.461 -0.48596 19 11 2 0 0 0 0.43463 1 43154 43154 10.824 0 1 1045400 + 46588 20128 31214 31957 54562 54562 0.060140294773418645 PLSLSYTRV 9 Unmodified _PLSLSYTRV_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.295299 1034.57605 0.32336 0.00016759 0.44927 0.00023286 0.77263 0.00040045 518.2958915344203 78.274 0.2525 78.274 78.127 78.379 0 -0.023739 -0.00012511 NaN 10.824 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 384340 + 46589 20128 31214 31957 0.060140294773418645 PLSLSYTRV 9 Unmodified _PLSLSYTRV_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.295299 1034.57605 0.040276 2.0875E-05 0.75305 0.0003903 0.79332 0.00041118 518.2958964341072 78.807 0.29615 78.321 78.165 78.461 -0.48596 0.023739 0.00018978 NaN 10.824 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1045400 + 46590 20128 31214 31957 0.060140294773418645 PLSLWFPF 8 Unmodified _PLSLWFPF_ 0 0 0 ENST00000337351.8_1_16:239199-239475:-|nuORF ENST00000337351.8_1_16:239199-239475:-|nuORF ENST00000337351.8_1_16:239199-239475:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2725524902344 2 503.773471 1005.53239 -0.12649 -6.3721E-05 -0.73376 -0.00036965 -0.86025 -0.00043337 503.7727412126633 59.672 0.24458 59.181 59.048 59.293 -0.49079 17 11 2 0 0 0 8.7369 1 32473 32473 15.768 0 1 2635300 46591 11927 31215 31958 54563 54563 0.029844647708500815 PLSLYMMSRPW 11 Unmodified _PLSLYMMSRPW_ 0 0 0 REV__ENST00000467294.1_1_3:50386114-50386411:-|nuORF REV__ENST00000467294.1_1_3:50386114-50386411:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.8421020507812 2 690.843776 1379.673 -0.011644 -8.0443E-06 -0.55188 -0.00038126 -0.56352 -0.00038931 690.8432564767949 41.275 0.31407 40.972 40.776 41.09 -0.30304 22 14 2 0 0 0 0.50268 1 21862 21862 26.268 14.773 1 5255200 + 46592 27427 31216 31959 54564 54564 -0.0016506762954122678 PLSMLSCCM 9 Unmodified _PLSMLSCCM_ 0 0 0 REV__ENST00000297185.7_1_5:137895611-137895707:-|nuORF REV__ENST00000297185.7_1_5:137895611-137895707:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7028198242188 2 492.704702 983.394851 -0.0063828 -3.1448E-06 -1.161 -0.00057205 -1.1674 -0.0005752 492.7038886234882 56.779 0.38785 56.294 56.136 56.523 -0.48554 29 18 2 0 0 0 0.53666 1 30834 30834 5.2307 0 1 2593700 + 46593 25278 31217 31960 54565 54565 -0.09751014478399611 PLSNGAPPV 9 Unmodified _PLSNGAPPV_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2350769042969 2 426.23471 850.454868 1.1244 0.00047926 -0.24539 -0.0001046 0.879 0.00037466 426.23454564301346 49.744 0.32633 44.204 44.05 44.377 -5.5391 28 20 2 0 0 0 0.042911 1 31096 31096 48.346 0 1 15959000 + 46594 18993 31218 31961 54566 54566 0.023658268346594014 PLSNGTHKVM 10 Unmodified _PLSNGTHKVM_ 0 0 0 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2835083007812 2 542.284408 1082.55426 1.1579 0.00062791 -0.87583 -0.00047495 0.28206 0.00015296 542.2836182170064 95.939 0.30894 89.764 89.584 89.893 -6.1757 31 18 2 0 0 0 0.32072 1 63492 63492 26.268 1.5943 1 13819000 46595 5039 31219 31962 54567 54567 0.016289014570929794 PLSNSVPE 8 Unmodified _PLSNSVPE_ 0 0 0 ENSG00000197860|ENST00000381007|SGTB ENSG00000197860|ENST00000381007|SGTB ENSG00000197860|ENST00000381007|SGTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.4266967773438 1 842.425424 841.418148 0.016771 1.4128E-05 0.23028 0.00019399 0.24705 0.00020812 842.4256034464414 58.902 0.39613 58.902 58.699 59.095 0 37 17 3 0 0 0 0.55032 1 32733 32733 30.225 3.8835 1 5799900 46596 10012 31220 31963 54568 54568 -0.008904697819048124 PLSNSVPE 8 Unmodified _PLSNSVPE_ 0 0 0 ENSG00000197860|ENST00000381007|SGTB ENSG00000197860|ENST00000381007|SGTB ENSG00000197860|ENST00000381007|SGTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7166748046875 2 421.71635 841.418148 0.065957 2.7815E-05 -0.074184 -3.1284E-05 -0.0082264 -3.4692E-06 421.71636224339966 58.929 0.27593 58.929 58.748 59.024 0 22 12 2 0 0 0 0.55032 1 32782 32782 30.225 0 1 1098100 46597 10012 31220 31963 54569 54569 -0.008904697819048124 PLSPPETPF 9 Unmodified _PLSPPETPF_ 0 0 0 REV__ENSG00000077097|ENST00000264331|TOP2B REV__ENSG00000077097|ENST00000264331|TOP2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.774658203125 2 492.755475 983.496398 0.61201 0.00030157 -0.96195 -0.00047401 -0.34994 -0.00017243 492.7551474585376 67.264 0.26431 66.781 66.675 66.939 -0.48218 20 11 2 0 0 0 0.19298 1 36793 36793 8.5933 0 1 1039200 + 46598 17601 31221 31964 54570 54570 0.0039896280333096 PLSPVSIC 8 Unmodified _PLSPVSIC_ 0 0 0 REV__ENST00000416739.5_1_12:3982439-3982553:-|nuORF REV__ENST00000416739.5_1_12:3982439-3982553:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 815.4312133789062 1 815.433152 814.425876 0.59429 0.00048461 -3.4556 -0.0028178 -2.8613 -0.0023332 815.4299155084615 99.73 0.12051 93.554 93.49 93.611 -6.1757 10 7 2 0 0 0 0.74163 1 66517 66517 13.508 2.3934 1 17693000 + 46599 26780 31222 31965 54571 54571 0.011239662140042128 PLSQPKKHL 9 Unmodified _PLSQPKKHL_ 0 0 0 REV__ENST00000539644.5_1_12:124497619-124497844:+|nuORF REV__ENST00000539644.5_1_12:124497619-124497844:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3199462890625 2 524.319109 1046.62366 1.0826 0.00056765 1.3408 0.00070301 2.4234 0.0012707 524.3200415758633 102.35 0.11094 96.174 96.093 96.204 -6.1757 9 7 2 0 0 0 0.37804 1 68698 68698 13.508 0.97634 1 4296800 + 46600 28568 31223 31966 54572 54572 0.10221728468172842 PLSRLKIYYL 10 Unmodified _PLSRLKIYYL_ 0 0 0 ENST00000374199.8_1_9:116054008-116054197:+|nuORF ENST00000374199.8_1_9:116054008-116054197:+|nuORF ENST00000374199.8_1_9:116054008-116054197:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7229919433594 3 422.592058 1264.75434 0.17312 7.316E-05 1.6701 0.00070578 1.8432 0.00077894 422.592749454786 45.777 0.24396 45.749 45.661 45.905 -0.028011 14 11 2 0 0 0 0.71042 1 24569 24569 1.7423 0.41263 1 1804200 46601 12438 31224 31967 54573 54573 0.13255699396358978 PLSRQYRRNEA 11 Unmodified _PLSRQYRRNEA_ 0 0 0 REV__ENSG00000151655|ENST00000358415|ITIH2 REV__ENSG00000151655|ENST00000358415|ITIH2 MSMS AL20221201_MKP_PDAC_01 4 695.3723754882812 2 695.370924 1388.72729 NaN NaN NaN NaN NaN NaN NaN 44.587 1 39.735 39.235 40.235 -4.852 0 0 0 0.71476 1 27240 27240 16.149 0.90062 1 + 46602 21080 31225 31968 54574 54574 0.048479838378852946 PLSRWQRR 8 Unmodified _PLSRWQRR_ 0 0 0 ENSG00000133980|ENST00000256362|VRTN ENSG00000133980|ENST00000256362|VRTN ENSG00000133980|ENST00000256362|VRTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8807067871094 3 366.880825 1097.62064 -0.53535 -0.00019641 -0.63385 -0.00023255 -1.1692 -0.00042895 366.88058663958867 19.242 0.17669 19.265 19.144 19.32 0.023106 14 9 3 0 0 0 0.80975 1 9687 9687 0.45834 0 1 329310 46603 4546 31226 31969 54575 54575 0.07573898134023693 PLSSLSQDSK 10 Unmodified _PLSSLSQDSK_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MSMS AL20221201_MKP_PDAC_01 4 531.2760620117188 2 531.277303 1060.54005 NaN NaN NaN NaN NaN NaN NaN 40.007 1 35.478 34.978 35.978 -4.5294 0 0 0 0.61997 1 23829 23829 20.415 4.5674 1 46604 4903 31227 31970 54576 54576 0.012205275098040147 PLSSPPPPLL 10 Unmodified _PLSSPPPPLL_ 0 0 0 REV__nc|ENSG00000132635|Q9H1Q7-2|PCED1A REV__nc|ENSG00000132635|Q9H1Q7-2|PCED1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3033752441406 2 509.302593 1016.59063 -0.50445 -0.00025692 0.54882 0.00027951 0.04437 2.2598E-05 509.3028806395072 61.285 0.26902 60.796 60.694 60.963 -0.48932 20 12 2 0 0 0 0.2829 1 33412 33412 28.487 1.6032 1 1500800 + 46605 19868 31228 31971 54577 54577 0.08300101625468415 PLSSQPVLI 9 Unmodified _PLSSQPVLI_ 0 0 0 TBCD-FOXK2|1|fusion;nc|ENSG00000141568|Q01167-2|FOXK2;ENSG00000141568|ENST00000335255|FOXK2 TBCD-FOXK2|1|fusion;nc|ENSG00000141568|Q01167-2|FOXK2 TBCD-FOXK2|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.287353515625 2 477.286943 952.559333 0.80779 0.00038555 -0.15207 -7.258E-05 0.65572 0.00031297 477.28688654115314 77.992 0.55944 71.816 71.498 72.058 -6.1757 53 31 2 0 0 0 0.039985 1 51087 51087 49.933 3.912 1 37739000 46606 30184;5354 31229 31972 54578 54578 0.08115528591372367 PLSSRREAELY 11 Unmodified _PLSSRREAELY_ 0 0 0 nc|ENSG00000159588|Q96LX7-5|CCDC17;ENSG00000159588|ENST00000528266|CCDC17;nc|ENSG00000159588|Q96LX7-2|CCDC17;ENST00000482416.5_1_1:46087308-46089051:-|nuORF nc|ENSG00000159588|Q96LX7-5|CCDC17 nc|ENSG00000159588|Q96LX7-5|CCDC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8460083007812 2 660.848958 1319.68336 -0.1398 -9.2384E-05 -0.47195 -0.00031189 -0.61175 -0.00040427 661.3523226370222 85.454 0.23902 79.278 79.168 79.407 -6.1757 21 14 2 0 0 0 0.48615 1 56369 56369 17.113 0.96379 1 18427000 46607 6662 31230 31973 54579 54579 0.036309546208940446 PLSSSKCLS 9 Unmodified _PLSSSKCLS_ 0 0 0 REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP REV__nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 923.4773559570312 1 921.470994 920.463718 0.46351 0.00042711 1.163 0.0010717 1.6265 0.0014988 921.4720223836982 82.071 0.73338 81.576 81.185 81.919 -0.4952 61 28 3 0 0 0 0.55144 1 44865 44865 4.3292 1.44 1 1435300 + 46608 18268 31231 31974 54580 54580 0.0003043240883471299 PLSSSLLSL 9 Unmodified _PLSSSLLSL_ 0 0 0 REV__ENST00000244670.12_1_6:42988481-42988613:+|nuORF REV__ENST00000244670.12_1_6:42988481-42988613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7716369628906 2 458.771126 915.527698 0.015087 6.9214E-06 2.5731 0.0011805 2.5882 0.0011874 458.77111161911495 70.308 0.24081 69.829 69.693 69.934 -0.47903 17 10 2 0 0 0 0.087258 1 38459 38459 36.044 0 1 655700 + 46609 24854 31232 31975 54581 54581 0.06655535837444404 PLSSSTIP 8 Unmodified _PLSSSTIP_ 0 0 0 REV__nc|ENSG00000124789|P49790-2|NUP153 REV__nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2222900390625 2 401.221268 800.427984 1.0842 0.000435 3.8226 0.0015337 4.9067 0.0019687 401.22281397545004 46.871 0.40421 46.838 46.572 46.976 -0.033417 35 19 3 0 0 0 0.80143 1 25207 25207 5.7604 0 1 7288100 + 46610 19472 31233 31976 54582 54582 0.019787182234722422 PLSTTLGT 8 Unmodified _PLSTTLGT_ 0 0 0 nc|ENSG00000260852|Q494R0|FBXL19-AS1 nc|ENSG00000260852|Q494R0|FBXL19-AS1 nc|ENSG00000260852|Q494R0|FBXL19-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2225952148438 2 395.221268 788.427984 0.20992 8.2964E-05 0.57617 0.00022772 0.78609 0.00031068 395.2211350765949 36.956 0.38084 36.956 36.878 37.259 0 29 18 2 0 0 0 0.80975 1 19725 19725 0.79363 0 1 2090700 46611 16594 31234 31977 54583 54583 0.025307182234996617 PLSYHFSTI 9 Unmodified _PLSYHFSTI_ 0 0 0 MER34A_dup1023|chr11:33702486-33702773:+|3.2951721961415443|0.0170586342162612|7.59|179.0|5|2|sense MER34A_dup1023|chr11:33702486-33702773:+|3.2951721961415443|0.0170586342162612|7.59|179.0|5|2|sense MER34A_dup1023|chr11:33702486-33702773:+|3.2951721961415443|0.0170586342162612|7.59|179.0|5|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7515258789062 2 532.7742 1063.53385 -0.058874 -3.1367E-05 0.99054 0.00052773 0.93167 0.00049637 532.7748945426382 54.119 0.24135 54.052 53.921 54.162 -0.066936 16 11 2 0 0 0 0.19613 1 29429 29429 4.3292 0.38484 1 870280 46612 15991 31235 31978 54584 54584 0.004620540689757036 PLSYLADLTYL 11 Unmodified _PLSYLADLTYL_ 0 0 0 ENST00000472644.6_3_3:105238940-105243229:+|nuORF ENST00000472644.6_3_3:105238940-105243229:+|nuORF ENST00000472644.6_3_3:105238940-105243229:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3435668945312 2 634.842279 1267.67001 1.0187 0.00064672 0.32121 0.00020392 1.3399 0.00085064 634.8427242168872 100.27 0.11124 94.095 94.03 94.141 -6.1757 11 6 2 0 0 0 0.00047726 1 67009 67009 88.954 7.0637 1 28954000 46613 13911 31236 31979 54585 54585 0.046877037889544226 PLSYLSRSF 9 Unmodified _PLSYLSRSF_ 0 0 0 ENSG00000188694|ENST00000340345|KRTAP24-1 ENSG00000188694|ENST00000340345|KRTAP24-1 ENSG00000188694|ENST00000340345|KRTAP24-1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2386474609375 2 535.287474 1068.5604 0.25734 0.00013775 -0.78046 -0.00041777 -0.52312 -0.00028002 535.2861976533816 62.09 0.22335 55.915 55.76 55.984 -6.1757 17 12 2 0 0 0 0.17275 1 39984 39984 10.824 4.1008 1 32667000 46614 9685 31237 31980 54586 54586 0.028857429603021956 PLSYLSRSF 9 Unmodified _PLSYLSRSF_ 0 0 0 ENSG00000188694|ENST00000340345|KRTAP24-1 ENSG00000188694|ENST00000340345|KRTAP24-1 ENSG00000188694|ENST00000340345|KRTAP24-1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.287474 1068.5604 -1.0096 -0.00054043 0.83441 0.00044665 -0.1752 -9.3784E-05 535.2877207905356 56.343 0.25183 55.858 55.689 55.941 -0.48554 -0.028424 0.00012937 NaN 15.847 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 7085100 46615 9685 31237 31980 0.028857429603021956 PLTAAFEAV 9 Unmodified _PLTAAFEAV_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.495361328125 1 918.49311 917.485833 0.11642 0.00010693 0.33816 0.0003106 0.45458 0.00041752 918.492897127932 81.786 0.26577 81.786 81.643 81.908 0 20 15 2 0 0 0 0.2001 1 45355 45355 23.148 7.3802 1 769620 46616 4191 31238 31981 54587 54587 0.023789801488987905 PLTCEEDEY 9 Unmodified _PLTCEEDEY_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.260498046875 2 549.71843 1097.42231 0.54486 0.00029952 -3.4728 -0.001909 -2.9279 -0.0016095 550.2172054649371 68.263 0.12153 67.782 67.683 67.804 -0.48071 6 5 2 0 0 0 0.20528 1 37296 37296 8.5933 3.3626 1 431070 + 46617 22087 31239 31982 54588 54588 -0.12250793141174654 PLTDFGLFS 9 Unmodified _PLTDFGLFS_ 0 0 0 ENST00000254846.9_1_17:7757062-7757251:+|nuORF ENST00000254846.9_1_17:7757062-7757251:+|nuORF ENST00000254846.9_1_17:7757062-7757251:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.5110473632812 1 996.503674 995.496398 -0.047027 -4.6863E-05 -0.5959 -0.00059382 -0.64293 -0.00064068 996.5028232765953 90.232 0.50224 90.232 89.967 90.47 0 71 33 3 0 0 0 0.54444 1 49891 49891 4.756 0 1 1858600 46618 11168 31240 31983 54589 54589 -0.0015303719666235338 PLTDLRSDF 9 Unmodified _PLTDLRSDF_ 0 0 0 nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2 nc|ENSG00000095002|P43246-2|MSH2 nc|ENSG00000095002|P43246-2|MSH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2728271484375 2 532.274564 1062.53457 NaN NaN NaN NaN NaN NaN NaN 88.117 1 88.117 87.617 88.617 0 0 0 0 0.82739 1 48780 48780 4.3292 0 1 46619 1641 31241 31984 54590 54590 0.0058084871798200766 PLTDNKQSL 9 Unmodified _PLTDNKQSL_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7482604980469 2 508.274564 1014.53457 0.50767 0.00025803 -2.1279 -0.0010816 -1.6202 -0.00082352 508.2731994120324 50.622 0.10214 50.622 50.54 50.643 0 6 4 2 0 0 0 0.18118 1 27899 27899 18.135 0 1 432600 46620 10127 31242 31985 54591 54591 0.027888487179893673 PLTENPRKY 9 Unmodified _PLTENPRKY_ 0 0 0 ENSG00000115138|ENST00000395826|POMC ENSG00000115138|ENST00000395826|POMC ENSG00000115138|ENST00000395826|POMC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7225341796875 2 559.303655 1116.59276 0.80395 0.00044965 3.3713 0.0018856 4.1752 0.0023352 559.3054130145773 72.462 0.24856 71.986 71.834 72.083 -0.47609 19 11 2 0 0 0 0.19298 1 39662 39662 8.5933 0 1 901360 46621 3089 31243 31986 54592 54592 0.03912530363277256 PLTFSSGF 8 Unmodified _PLTFSSGF_ 0 0 0 REV__ENST00000558530.1_1_20:35238119-35240623:+|nuORF REV__ENST00000558530.1_1_20:35238119-35240623:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 856.4288330078125 1 855.424696 854.417419 -0.11975 -0.00010243 0.30047 0.00025703 0.18073 0.0001546 855.4250398625906 91.927 0.36311 91.446 91.269 91.632 -0.48092 38 20 2 0 0 0 0.80624 1 50193 50193 2.8892 0 1 2238600 + 46622 28802 31244 31987 54593 54593 -0.01561264430938536 PLTGCLSTLF 10 Unmodified _PLTGCLSTLF_ 0 0 0 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.277099609375 2 526.27826 1050.54197 0.90843 0.00047809 -1.2691 -0.00066788 -0.36064 -0.0001898 526.276740057969 52.538 0.40731 46.803 46.617 47.024 -5.7345 39 22 3 0 0 0 0.2178 1 33125 33125 32.305 0 1 89914000 46623 7932 31245 31988 54594 54594 0.018718649940410614 PLTHALFEEL 10 Unmodified _PLTHALFEEL_ 0 0 0 ENST00000439846.1_1_3:19982722-19982806:-|nuORF ENST00000439846.1_1_3:19982722-19982806:-|nuORF ENST00000439846.1_1_3:19982722-19982806:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.1929626464844 3 390.544885 1168.61282 1.0455 0.0004083 -1.5631 -0.00061046 -0.51762 -0.00020215 390.54391187842566 28.602 0.23058 25.454 25.303 25.534 -3.1482 19 11 2 0 0 0 0.23767 1 15918 15918 6.1918 0.78914 1 4467500 46624 13381 31246 31989 54595 54595 0.03526281303243195 PLTLKVNKHWF 11 Unmodified _PLTLKVNKHWF_ 0 0 0 REV__ENST00000395425.6_1_14:55642626-55642734:-|nuORF REV__ENST00000395425.6_1_14:55642626-55642734:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2405700683594 3 461.602957 1381.78704 0.5573 0.00025725 -0.51774 -0.00023899 0.039558 1.826E-05 461.60264937267266 81.876 0.26152 81.381 81.236 81.498 -0.4952 15 9 2 0 0 0 0.3058 1 44815 44815 1.4551 0 1 660810 + 46625 26478 31247 31990 54596 54596 0.11141906519196709 PLTPGPSFLS 10 Unmodified _PLTPGPSFLS_ 0 0 0 REV__ENSG00000156860|ENST00000356166|FBRS REV__ENSG00000156860|ENST00000356166|FBRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2773132324219 2 508.276575 1014.5386 0.41664 0.00021177 1.4199 0.00072171 1.8366 0.00093348 508.277328915009 74.551 0.39107 74.075 73.84 74.231 -0.47588 26 16 2 0 0 0 0.50944 1 40776 40776 15.847 5.0233 1 770780 + 46626 21348 31248 31991 54597 54597 0.03190938211707817 PLTPNSPP 8 Unmodified _PLTPNSPP_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MULTI-MSMS AL20221201_MKP_PDAC_01 4 822.4339599609375 1 822.435595 821.428318 1.2346 0.0010154 -0.22334 -0.00018369 1.0113 0.00083169 822.4354599934034 50.556 0.32628 45.017 44.854 45.18 -5.5391 29 20 2 0 0 0 0.11159 2 31649 31649;31804 96.285 14.138 1 25962000 + 46627 18993 31249 31992 54598;54599 54598 0.010461379433309048 PLTQDHFRN 9 Unmodified _PLTQDHFRN_ 0 0 0 ENST00000430014.1_1:144520944-144521145:-|nuORF ENST00000430014.1_1:144520944-144521145:-|nuORF ENST00000430014.1_1:144520944-144521145:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2823486328125 2 564.283254 1126.55196 NaN NaN NaN NaN NaN NaN NaN 41.142 1 41.14 40.64 41.64 -0.0017929 0 0 0 0.70001 1 21972 21972 9.3831 1.473 1 46628 13231 31250 31993 54600 54600 -0.00625810956330497 PLTRENSTF 9 Unmodified _PLTRENSTF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3247680664062 2 532.772188 1063.52982 0.83964 0.00044734 -3.3994 -0.0018111 -2.5597 -0.0013638 532.769575962226 71.546 0.27792 71.585 71.386 71.664 0.039032 19 12 2 0 0 0 0.18521 1 39349 39349 11.64 0 1 807980 46629 9967 31251 31994 54601 54601 0.0005996457521177945 PLTRLYLT 8 Unmodified _PLTRLYLT_ 0 0 0 ENSG00000183695|ENST00000329773|MRGPRX2 ENSG00000183695|ENST00000329773|MRGPRX2 ENSG00000183695|ENST00000329773|MRGPRX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 976.5868530273438 1 976.582593 975.575317 3.9428 0.0038504 -3.2495 -0.0031734 0.69329 0.00067705 976.5797047329617 98.219 0.21025 98.201 98.072 98.283 -0.018196 10 7 2 0 0 0 0.65867 1 54548 54548 20.871 0 1 1398300 46630 9179 31252 31995 54602 54602 0.08655234828268021 PLTSFIPKY 9 Unmodified _PLTSFIPKY_ 0 0 0 REV__ENSG00000119906|ENST00000238961|SLF2 REV__ENSG00000119906|ENST00000238961|SLF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.8130493164062 2 533.302593 1064.59063 0.61176 0.00032625 -1.4531 -0.00077493 -0.84131 -0.00044867 533.3022838433839 101.78 0.099213 95.603 95.545 95.644 -6.1757 13 8 2 0 0 0 0.097209 1 68285 68285 23.148 1.4018 1 79308000 + 46631 19216 31253 31996 54603 54603 0.060921016254724236 PLTVPSWE 8 Unmodified _PLTVPSWE_ 0 0 0 ENST00000576723.5_1_17:7843028-7852016:+|nuORF;nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB ENST00000576723.5_1_17:7843028-7852016:+|nuORF ENST00000576723.5_1_17:7843028-7852016:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 929.4847412109375 1 928.47746 927.470183 0.66868 0.00062085 -1.2978 -0.001205 -0.62911 -0.00058411 928.4760596892546 75.16 0.43959 74.682 74.405 74.844 -0.47714 39 19 3 0 0 0 0.80722 1 41053 41053 2.3027 0 1 6503100 46632 7942 31254 31997 54604 54604 0.00354693631857117 PLTVYTLHAY 10 Unmodified _PLTVYTLHAY_ 0 0 0 REV__ENST00000483374.1_1_22:45593059-45593908:-|nuORF REV__ENST00000483374.1_1_22:45593059-45593908:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3170776367188 2 589.316232 1176.61791 NaN NaN NaN NaN NaN NaN NaN 88.015 1 87.51 87.01 88.01 -0.50423 0 0 0 0.97302 1 48141 48141 3.5965 0.8613 1 + 46633 18051 31255 31998 54605 54605 0.03666585165842662 PLVAKGSG 8 Unmodified _PLVAKGSG_ 0 0 0 REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF REV__ENST00000266557.3_1_12:6554080-6554389:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7203979492188 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 40.845 1 40.844 40.344 41.344 -0.0017929 0 0 0 0.97444 1 21798 21798 2.8892 0 1 + 46634 25103 31256 31999 54606 54606 0.04822459151534986 PLVCWIVC 8 Unmodified _PLVCWIVC_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7406616210938 2 466.74026 931.465966 0.20042 9.3544E-05 -0.46568 -0.00021735 -0.26526 -0.00012381 466.74003366143324 27.97 0.32657 27.999 27.862 28.188 0.029564 21 12 2 0 0 0 0.80044 1 14628 14628 6.3541 0 1 6151000 46635 6898 31257 32000 54607 54607 -0.002508103870695777 PLVDFQSLLI 10 Unmodified _PLVDFQSLLI_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3358154296875 2 572.834257 1143.65396 0.67221 0.00038507 0.19351 0.00011085 0.86572 0.00049591 572.8343074859482 83.917 0.7474 83.418 83.05 83.797 -0.49961 79 31 3 0 0 0 0.68719 1 46094 46094 4.3292 0 1 2571500 46636 3477 31258 32001 54608 54608 0.08788042342712288 PLVEKFEKH 9 Unmodified _PLVEKFEKH_ 0 0 0 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 nc|ENSG00000116750|Q9Y5K5-4|UCHL5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1946716308594 3 376.213358 1125.61824 0.2789 0.00010492 0.11303 4.2523E-05 0.39193 0.00014745 376.21340777867397 55.767 0.35564 55.289 54.964 55.32 -0.47798 26 16 2 0 0 0 0.20727 1 30250 30250 8.1555 0 1 909320 46637 16144 31259 32002 54609 54609 0.060460048857066795 PLVFFFCIFF 10 Unmodified _PLVFFFCIFF_ 0 0 0 ENST00000347559.6_1_1:156108990-156109185:+|nuORF ENST00000347559.6_1_1:156108990-156109185:+|nuORF ENST00000347559.6_1_1:156108990-156109185:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 640.3340454101562 2 640.332839 1278.65112 NaN NaN NaN NaN NaN NaN NaN 91.194 1 85.019 84.519 85.519 -6.1757 0 0 0 0.6668 1 60275 60275 18.135 8.7875 1 46638 12035 31260 32003 54610 54610 0.02294495684168396 PLVFNLIVVK 10 Unmodified _PLVFNLIVVK_ 0 0 0 ENST00000367941.6_1_6:132781444-132781717:-|nuORF ENST00000367941.6_1_6:132781444-132781717:-|nuORF ENST00000367941.6_1_6:132781444-132781717:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.3695068359375 2 571.37081 1140.72707 NaN NaN NaN NaN NaN NaN NaN 108.25 1 102.07 101.57 102.57 -6.1757 0 0 0 1.0024 1 72357 72357 0.40072 0.050084 1 46639 12252 31261 32004 54611 54611 0.16233215855982053 PLVFYLEAW 9 Unmodified _PLVFYLEAW_ 0 0 0 ENSG00000203907|ENST00000370359|OOEP ENSG00000203907|ENST00000370359|OOEP ENSG00000203907|ENST00000370359|OOEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.361083984375 2 569.302593 1136.59063 1.3765 0.00078363 -3.1192 -0.0017758 -1.7428 -0.00099216 569.3003269508218 91.977 0.33331 92.008 91.829 92.162 0.030197 21 11 2 0 0 0 0.19298 1 51056 51056 8.5933 0 1 6067600 46640 10233 31262 32005 54612 54612 0.02780101625444331 PLVGAVTF 8 Unmodified _PLVGAVTF_ 0 0 0 REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1 REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1 MSMS AL20221201_MKP_PDAC_01 4 402.2369689941406 2 402.236722 802.45889 NaN NaN NaN NaN NaN NaN NaN 59.255 1 53.181 52.681 53.681 -6.0745 0 0 0 0.25871 1 38026 38026 70.865 18.171 1 + 46641 22415 31263 32006 54613 54613 0.04975916328373842 PLVGHKQHQ 9 Unmodified _PLVGHKQHQ_ 0 0 0 REV__ENSG00000266826|ENST00000583666|IGBP1C REV__ENSG00000266826|ENST00000583666|IGBP1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2924194335938 2 522.290882 1042.56721 0.42445 0.00022169 1.1684 0.00061027 1.5929 0.00083196 522.2920071593051 81.381 0.29539 81.381 81.195 81.491 0 20 12 2 0 0 0 0.53666 1 45142 45142 5.2307 0 1 434600 + 46642 24609 31264 32007 54614 54614 0.047631006314986735 PLVGHKQHQ 9 Unmodified _PLVGHKQHQ_ 0 0 0 REV__ENSG00000266826|ENST00000583666|IGBP1C REV__ENSG00000266826|ENST00000583666|IGBP1C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 522.290882 1042.56721 0.42445 0.00022169 1.1684 0.00061027 1.5929 0.00083196 522.2920071593051 81.381 0.29539 81.381 81.195 81.491 0 0 0 NaN 5.2307 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 434600 + 46643 24609 31264 32007 0.047631006314986735 PLVHVVVST 9 Unmodified _PLVHVVVST_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.7892150878906 2 475.78711 949.559667 NaN NaN NaN NaN NaN NaN NaN 28.43 1 28.46 27.96 28.96 0.029564 0 0 0 0.7453 1 14803 14803 7.9102 0.62092 1 + 46644 20626 31265 32008 54615 54615 0.08286948311229025 PLVIRGHY 8 Unmodified _PLVIRGHY_ 0 0 0 REV__ENSG00000198833|ENST00000435041|UBE2J1 REV__ENSG00000198833|ENST00000435041|UBE2J1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7793579101562 2 477.779619 953.544686 0.83368 0.00039832 1.2531 0.00059873 2.0868 0.00099704 477.7806294289721 74.648 0.42255 74.173 73.954 74.376 -0.47588 39 17 3 0 0 0 0.80624 1 40774 40774 2.8892 0 1 1619300 + 46645 24071 31266 32009 54616 54616 0.06605501233900668 PLVKKIKPKVV 11 Unmodified _PLVKKIKPKVV_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.9402465820312 2 624.941934 1247.86931 NaN NaN NaN NaN NaN NaN NaN 15.405 1 15.41 14.91 15.91 0.0057774 0 0 0 0.9435 1 7676 7676 0 0 1 46646 9324 31267 32010 54617 54617 0.25529428598133563 PLVLLLARLTL 11 Unmodified _PLVLLLARLTL_ 0 0 0 REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 611.4166870117188 2 611.418291 1220.82203 NaN NaN NaN NaN NaN NaN NaN 103.77 1 97.596 97.096 98.096 -6.1757 0 0 0 0.94307 1 69547 69547 0.30703 0 1 + 46647 26096 31268 32011 54618 54618 0.22045149327163927 PLVMFLSLF 9 Unmodified _PLVMFLSLF_ 0 0 0 ENST00000428097.5_1_7:55539979-55540045:-|nuORF ENST00000428097.5_1_7:55539979-55540045:-|nuORF ENST00000428097.5_1_7:55539979-55540045:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8009033203125 2 533.803914 1065.59328 0.97989 0.00052307 -0.66382 -0.00035435 0.31607 0.00016872 533.8038037497813 38.035 0.61416 33.666 33.286 33.9 -4.3689 95 36 4 0 0 0 0.078417 1 22315 22315 38.151 0 1 74297000 46648 13206 31269 32012 54619 54619 0.06310233758767936 PLVMFLSLF 9 Unmodified _PLVMFLSLF_ 0 0 0 ENST00000428097.5_1_7:55539979-55540045:-|nuORF ENST00000428097.5_1_7:55539979-55540045:-|nuORF ENST00000428097.5_1_7:55539979-55540045:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2063903808594 3 356.205035 1065.59328 1.7126 0.00061002 1.4765 0.00052592 3.189 0.0011359 356.20556616330833 38.029 0.78835 33.66 33.128 33.916 -4.3689 132 47 4 0 0 0 0.39863 1 22538 22538 12.241 2.8575 1 284170000 46649 13206 31269 32012 54620 54620 0.06310233758767936 PLVMSAGSVL 10 Unmodified _PLVMSAGSVL_ 0 0 0 REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2744445800781 2 487.272978 972.531403 NaN NaN NaN NaN NaN NaN NaN 69.185 1 63.009 62.509 63.509 -6.1757 0 0 0 0.91523 1 45178 45178 7.2892 0.93513 1 + 46650 22000 31270 32013 54621 54621 0.044038823396363114 PLVRQVLRQTF 11 Unmodified _PLVRQVLRQTF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.0357055664062 2 678.909153 1355.80375 NaN NaN NaN NaN NaN NaN NaN 98.208 1 98.19 97.69 98.69 -0.018188 0 0 0 0.9385 1 54553 54553 3.5965 0 1 46651 2632 31271 32014 54622 54622 0.14008407405140133 PLVSDEVFI 9 Unmodified _PLVSDEVFI_ 0 0 0 ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3083190917969 2 509.776408 1017.53826 0.76589 0.00039043 0.11569 5.8978E-05 0.88158 0.00044941 509.7763132570973 101.36 0.26624 95.185 95.107 95.373 -6.1757 23 8 4 0 0 0 0.37804 1 67941 67941 13.508 0 1 150930000 46652 1900 31272 32015 54623 54623 0.030195184918625273 PLVSIAATA 9 Unmodified _PLVSIAATA_ 0 0 0 nc|ENSG00000256463|Q9BXA9-4|SALL3;ENSG00000256463|ENST00000537592|SALL3;nc|ENSG00000256463|Q9BXA9-3|SALL3;nc|ENSG00000256463|Q9BXA9-2|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 842.4960327148438 1 842.498195 841.490919 -1.2832 -0.0010811 -1.385 -0.0011668 -2.6682 -0.002248 842.4967776850211 77.729 0.25072 77.246 77.082 77.333 -0.4826 15 10 2 0 0 0 0.62242 1 42530 42530 0 0 1 700160 46653 10800 31273 32016 54624 54624 0.06383284011496926 PLVSQTDIF 9 Unmodified _PLVSQTDIF_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.27392578125 2 510.274032 1018.53351 NaN NaN NaN NaN NaN NaN NaN 38.245 1 38.245 37.745 38.745 0 0 0 0 0.15549 1 20413 20413 36.127 1.7253 1 46654 637 31274 32017 54625 54625 0.024986343491036678 PLVSTKEEL 9 Unmodified _PLVSTKEEL_ 0 0 0 REV__ENSG00000088387|ENST00000682017|DOCK9 REV__ENSG00000088387|ENST00000682017|DOCK9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3308715820312 2 508.28714 1014.55973 0.48265 0.00024532 -2.4938 -0.0012676 -2.0112 -0.0010222 508.28620310968626 74.392 0.17986 74.437 74.321 74.501 0.045151 11 7 2 0 0 0 0.19298 1 40994 40994 13.508 0 1 662980 + 46655 17805 31275 32018 54626 54626 0.05302903520566815 PLVTTHSRI 9 Unmodified _PLVTTHSRI_ 0 0 0 ENST00000313010.7_1_11:82561531-82564256:-|nuORF ENST00000313010.7_1_11:82561531-82564256:-|nuORF ENST00000313010.7_1_11:82561531-82564256:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.320556640625 2 512.300916 1022.58728 NaN NaN NaN NaN NaN NaN NaN 101.47 1 95.295 94.795 95.795 -6.1757 0 0 0 0.50124 1 68083 68083 15.847 1.0089 1 46656 11707 31276 32019 54627 54627 0.07688851571458599 PLVTVEELF 9 Unmodified _PLVTVEELF_ 0 0 0 REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9 REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.811767578125 2 523.792058 1045.56956 0.8337 0.00043668 0.46115 0.00024155 1.2949 0.00067823 523.7923305648425 101.6 0.33163 95.425 95.192 95.524 -6.1757 16 8 2 0 0 0 0.16229 1 68114 68114 24.674 2.2213 1 41223000 + 46657 18850 31277 32020 54628 54628 0.04860091525938515 PLVVKYRVY 9 Unmodified _PLVVKYRVY_ 0 0 0 nc|ENSG00000293034|A6NFF2|NAP1L6P nc|ENSG00000293034|A6NFF2|NAP1L6P nc|ENSG00000293034|A6NFF2|NAP1L6P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5664978027344 3 379.565732 1135.67537 0.43096 0.00016358 1.0272 0.00038988 1.4581 0.00055346 379.5661795326855 48.016 0.31494 47.977 47.827 48.142 -0.038643 45 15 4 0 0 0 0.58865 1 25962 25962 1.0715 0 1 18714000 46658 16649 31278 32021 54629 54629 0.11295472162078113 PLVVTGHCCVR 11 Unmodified _PLVVTGHCCVR_ 0 0 0 REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2067260742188 3 395.207333 1182.60017 NaN NaN NaN NaN NaN NaN NaN 95.257 1 94.889 94.389 95.389 -0.36814 0 0 0 0.94337 1 52032 52032 0.094841 0 1 + 46659 17966 31279 32022 54630 54630 0.016172233676797987 PLVWSNPASE 10 Unmodified _PLVWSNPASE_ 0 0 0 ENST00000604081.1_1_12:54388338-54389007:-|nuORF ENST00000604081.1_1_12:54388338-54389007:-|nuORF ENST00000604081.1_1_12:54388338-54389007:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5130004882812 3 367.185468 1098.53457 NaN NaN NaN NaN NaN NaN NaN 57.207 1 57.207 56.707 57.707 0 0 0 0 0.96627 1 31831 31831 2.086 0.17963 1 46660 15837 31280 32023 54631 54631 -0.010751512820206699 PLVYFMYML 9 Unmodified _PLVYFMYML_ 0 0 0 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7997436523438 2 588.795232 1175.57591 NaN NaN NaN NaN NaN NaN NaN 65.676 1 65.676 65.176 66.176 0 0 0 0 0.70111 1 36630 36630 9.3474 2.6243 1 + 46661 24302 31281 32024 54632 54632 -0.0048542983854531485 PLVYREEYL 9 Unmodified _PLVYREEYL_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2149658203125 3 394.544885 1180.61282 0.4194 0.00016547 0.14997 5.9171E-05 0.56937 0.00022464 394.544738280438 38.736 0.23819 38.736 38.62 38.858 0 19 10 2 0 0 0 0.21798 1 20680 20680 0 0 1 2109600 + 46662 16944 31282 32025 54633 54633 0.029742813032498816 PLVYTLEH 8 Unmodified _PLVYTLEH_ 0 0 0 REV__ENSG00000165029|ENST00000374736|ABCA1 REV__ENSG00000165029|ENST00000374736|ABCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2635498046875 2 486.263468 970.512382 NaN NaN NaN NaN NaN NaN NaN 20.401 1 20.411 19.911 20.911 0.010553 0 0 0 0.97444 1 10404 10404 0.79363 0 1 + 46663 21973 31283 32026 54634 54634 0.02594669040252029 PLWDQHNFF 9 Unmodified _PLWDQHNFF_ 0 0 0 REV__B3GALT2|p.H46Q|1|0.06|ENSG00000162630|chr1:193181425-193181425|A/C|missense_variant REV__B3GALT2|p.H46Q|1|0.06|ENSG00000162630|chr1:193181425-193181425|A/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2835693359375 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 85.777 1 85.777 85.277 86.277 0 0 0 0 0.82015 1 47526 47526 5.2307 0 1 + 46664 16740 31284 32027 54635 54635 -0.04228025325255658 PLWEYLDPF 9 Unmodified _PLWEYLDPF_ 0 0 0 REV__ENST00000300688.7_1_11:118272047-118272203:+|nuORF REV__ENST00000300688.7_1_11:118272047-118272203:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2900390625 2 590.289682 1178.56481 NaN NaN NaN NaN NaN NaN NaN 100.64 1 100.6 100.1 101.1 -0.04216 0 0 0 0.70111 1 55911 55911 9.3474 0.75416 1 + 46665 25312 31285 32028 54636 54636 -0.01732792616826373 PLWFEGVA 8 Unmodified _PLWFEGVA_ 0 0 0 REV__ENST00000292431.4_1_19:13249425-13249899:+|nuORF REV__ENST00000292431.4_1_19:13249425-13249899:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.4730224609375 1 918.47198 917.464704 0.17856 0.00016401 -3.3156 -0.0030453 -3.1371 -0.0028813 918.4695106036253 53.462 0.14295 53.01 52.922 53.065 -0.45173 10 6 2 0 0 0 0.77907 1 28916 28916 10.183 0.80027 1 976730 + 46666 25245 31286 32029 54637 54637 0.002670148400511607 PLWIWGDSF 9 Unmodified _PLWIWGDSF_ 0 0 0 ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF ENST00000513372.5_1_4:2256680-2256926:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3045654296875 2 560.776742 1119.53893 0.76516 0.00042908 -1.033 -0.00057928 -0.26784 -0.0001502 560.7757582745268 52.313 0.3144 51.88 51.649 51.964 -0.43367 23 14 2 0 0 0 0.19891 1 28281 28281 11.64 3.047 1 1629400 46667 14638 31287 32030 54638 54638 -0.01605642068443558 PLWLREWWFYD 11 Unmodified _PLWLREWWFYD_ 0 0 0 REV__ENSG00000143418|ENST00000368954|CERS2 REV__ENSG00000143418|ENST00000368954|CERS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.895751953125 2 805.893169 1609.77178 NaN NaN NaN NaN NaN NaN NaN 73.409 1 72.933 72.433 73.433 -0.47588 0 0 0 0.94144 1 40172 40172 1.4819 1.4819 1 + 46668 20638 31288 32031 54639 54639 -0.008710050686431714 PLWLYLYFEYF 11 Unmodified _PLWLYLYFEYF_ 0 0 0 ENST00000486810.5_1_17:17171351-17179368:-|nuORF;ENST00000462236.1_1_17:17171268-17179473:-|nuORF ENST00000486810.5_1_17:17171351-17179368:-|nuORF ENST00000486810.5_1_17:17171351-17179368:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 518.5936889648438 3 518.595356 1552.76424 NaN NaN NaN NaN NaN NaN NaN 84.835 1 78.66 78.16 79.16 -6.1757 0 0 0 0.9385 1 55832 55832 1.4551 0 1 46669 13674 31289 32032 54640 54640 0.00996842611084503 PLWNQSFLF 9 Unmodified _PLWNQSFLF_ 0 0 0 ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.534912109375 3 384.53432 1150.58113 1.2909 0.00049638 0.336 0.0001292 1.6269 0.00062559 384.53440181138143 90.151 1.1727 83.975 83.598 84.771 -6.1757 190 68 4 0 0 0 0.2546 1 59363 59363 19.362 4.1135 1 92254000 46670 5243 31290 32033 54641 54641 0.011863333399332987 PLWPAPIP 8 Unmodified _PLWPAPIP_ 0 0 0 REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 445.7606506347656 2 445.760364 889.506175 0.707 0.00031515 -0.32787 -0.00014615 0.37913 0.000169 445.7602723182594 78.457 0.35006 78.509 78.327 78.677 0.052452 33 14 3 0 0 0 0.42709 1 43315 43315 41.817 41.817 1 5369400 + 46671 26944 31291 32034 54642 54642 0.057001955993769116 PLWPAPIP 8 Unmodified _PLWPAPIP_ 0 0 0 REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF REV__ENST00000428783.1_1_13:32520203-32526732:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.7604370117188 2 445.760364 889.506175 1.2414 0.00055338 -0.5229 -0.00023309 0.71853 0.00032029 445.7602033495077 94.649 0.52579 88.474 88.204 88.73 -6.1757 73 30 3 0 0 0 0.42709 2 62558 62558;62839 41.817 41.817 1 35895000 + 46672 26944 31291 32034 54643;54644 54643 0.057001955993769116 PLWPLDPRY 9 Unmodified _PLWPLDPRY_ 0 0 0 REV__ENST00000398900.2_1_3:170371678-170371921:-|nuORF REV__ENST00000398900.2_1_3:170371678-170371921:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2098083496094 3 386.209836 1155.60768 -0.16884 -6.5209E-05 2.759 0.0010655 2.5901 0.0010003 386.21086151111484 32.559 0.30184 32.588 32.44 32.742 0.029747 23 11 3 0 0 0 0.48152 1 17131 17131 5.2969 0 1 1561100 + 46673 26574 31292 32035 54645 54645 0.03610022231259791 PLWYRQWS 8 Unmodified _PLWYRQWS_ 0 0 0 REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF REV__ENST00000399151.3_1_21:37642452-37650333:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2861328125 2 568.287808 1134.56106 0.29724 0.00016892 -1.9144 -0.0010879 -1.6171 -0.00091901 568.2866561681973 22.083 0.1402 22.096 22.017 22.157 0.013796 8 5 2 0 0 0 0.80975 1 11356 11356 0.79363 0 1 471820 + 46674 26578 31293 32036 54646 54646 -0.0008341760001258081 PLYADPYTP 9 Unmodified _PLYADPYTP_ 0 0 0 nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 MSMS AL20221201_MKP_PDAC_01 4 518.7537841796875 2 518.752933 1035.49131 NaN NaN NaN NaN NaN NaN NaN 75.06 1 68.885 68.385 69.385 -6.1757 0 0 0 0.15618 1 49082 49082 36.044 0 1 46675 9568 31294 32037 54647 54647 -0.025013410592919172 PLYCAMMIAL 10 Unmodified _PLYCAMMIAL_ 0 0 0 ENSG00000203805|ENST00000398250|PLPP4;nc|ENSG00000203805|Q5VZY2-2|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1894226074219 3 375.85502 1124.54323 0.16091 6.0479E-05 0.94308 0.00035446 1.104 0.00041494 376.18952302993233 73.228 0.29404 73.269 73.108 73.402 0.041725 29 13 3 0 0 0 0.68719 1 40362 40362 2.086 0.63089 1 2812500 46676 10226 31295 32038 54648 54648 -0.01405960233046244 PLYCAMMIAL 10 Unmodified _PLYCAMMIAL_ 0 0 0 ENSG00000203805|ENST00000398250|PLPP4;nc|ENSG00000203805|Q5VZY2-2|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 375.85502 1124.54323 0.16091 6.0479E-05 0.94308 0.00035446 1.104 0.00041494 376.18952302993233 73.228 0.29404 73.269 73.108 73.402 0.041725 0.0117 -3.2437E-05 NaN 2.086 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2812500 46677 10226 31295 32038 -0.01405960233046244 PLYCCQQF 8 Unmodified _PLYCCQQF_ 0 0 0 REV__nc|ENSG00000166938|Q8TF46-4|DIS3L REV__nc|ENSG00000166938|Q8TF46-4|DIS3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2165832519531 2 501.214606 1000.41466 NaN NaN NaN NaN NaN NaN NaN 57.182 1 57.182 56.682 57.682 0 0 0 0 0.88073 1 31817 31817 19.439 0 1 + 46678 22167 31296 32039 54649 54649 -0.08553179151772383 PLYDSKLY 8 Unmodified _PLYDSKLY_ 0 0 0 REV__ENSG00000258223|ENST00000547058|PRSS58 REV__ENSG00000258223|ENST00000547058|PRSS58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7637329101562 2 499.7633 997.512048 0.48476 0.00024227 2.7258 0.0013622 3.2105 0.0016045 499.7642615734769 72.994 0.24251 72.519 72.341 72.583 -0.47588 12 10 2 0 0 0 0.80044 1 39923 39923 6.3541 0 1 389630 + 46679 24568 31297 32040 54650 54650 0.01319249320374638 PLYEGKQLTKQ 11 Unmodified _PLYEGKQLTKQ_ 0 0 0 REV__ENSG00000180043|ENST00000424985|GARIN5B REV__ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.8641357421875 2 652.864077 1303.7136 0.43852 0.0002863 0.14609 9.5375E-05 0.58461 0.00038167 652.8640893944688 51.789 0.2433 51.73 51.592 51.835 -0.058918 20 11 2 0 0 0 0.46131 1 28020 28020 18.373 2.224 1 4059600 + 46680 23135 31298 32041 54651 54651 0.07389313286080323 PLYEWKLRLYV 11 Unmodified _PLYEWKLRLYV_ 0 0 0 ENST00000586588.5_1_19:10244028-10244166:-|nuORF ENST00000586588.5_1_19:10244028-10244166:-|nuORF ENST00000586588.5_1_19:10244028-10244166:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 740.672607421875 2 740.421562 1478.82857 0.74365 0.00055061 1.1124 0.00082361 1.856 0.0013742 740.923301223961 75.335 0.16842 69.159 69.026 69.194 -6.1757 13 8 2 0 0 0 0.29817 1 49254 49254 8.1555 2.4237 1 7016600 46681 15625 31299 32042 54652 54652 0.10831042487893683 PLYFLPEYE 9 Unmodified _PLYFLPEYE_ 0 0 0 nc|ENSG00000162894|O60667-2|FCMR nc|ENSG00000162894|O60667-2|FCMR nc|ENSG00000162894|O60667-2|FCMR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8627014160156 3 390.862102 1169.56448 0.20218 7.9026E-05 0.82997 0.0003244 1.0322 0.00040343 390.8625019230391 31.442 0.90447 31.339 31.013 31.918 -0.10269 96 36 3 0 0 0 0.49272 2 16501 16178;16501 4.897 0 1 12268000 46682 16323 31300 32043 54653;54654 54654 -0.01352212336678349 PLYHDRGF 8 Unmodified _PLYHDRGF_ 0 0 0 REV__ENSG00000179774|ENST00000373673|ATOH7 REV__ENSG00000179774|ENST00000373673|ATOH7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2715759277344 2 502.751059 1003.48756 0.26646 0.00013397 -1.3927 -0.00070017 -1.1262 -0.0005662 503.2495296926523 44.121 0.21368 44.121 44.051 44.265 0 18 10 2 0 0 0 8.7369 1 23968 23968 9.3474 1.4373 1 6215200 + 46683 23117 31301 32044 54655 54655 -0.014039660424714384 PLYHDRGF 8 Unmodified _PLYHDRGF_ 0 0 0 REV__ENSG00000179774|ENST00000373673|ATOH7 REV__ENSG00000179774|ENST00000373673|ATOH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7554931640625 2 502.751059 1003.48756 1.0135 0.00050954 2.5506 0.0012823 3.5641 0.0017919 502.7555334380572 50.016 0.34275 44.477 44.251 44.594 -5.5391 36 21 3 0 0 0 0.72953 1 31311 31311 14.582 2.0501 1 14101000 + 46684 23117 31301 32044 54656 54656 -0.014039660424714384 PLYHDRGF 8 Unmodified _PLYHDRGF_ 0 0 0 REV__ENSG00000179774|ENST00000373673|ATOH7 REV__ENSG00000179774|ENST00000373673|ATOH7 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 502.751059 1003.48756 1.0135 0.00050954 2.5506 0.0012823 3.5641 0.0017919 502.7555334380572 50.016 0.34275 44.477 44.251 44.594 -5.5391 0.17798 0.0012626 NaN 14.582 36 21 3 NaN NaN NaN NaN 0 NaN NaN 0 14101000 + 46685 23117 31301 32044 -0.014039660424714384 PLYIRPAL 8 Unmodified _PLYIRPAL_ 0 0 0 REV__ENST00000471018.6_1_1:2065362-2066779:+|nuORF REV__ENST00000471018.6_1_1:2065362-2066779:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2939147949219 2 471.792195 941.569838 1.1821 0.00055772 2.9949 0.001413 4.177 0.0019707 471.79360690220955 46.619 0.24178 46.586 46.491 46.733 -0.033417 15 11 2 0 0 0 8.7369 1 25105 25105 14.582 3.4672 1 1428400 + 46686 27486 31302 32045 54657 54657 0.09671556036448692 PLYNLYNKL 9 Unmodified _PLYNLYNKL_ 0 0 0 ENSG00000188816|ENST00000339992|HMX2 ENSG00000188816|ENST00000339992|HMX2 ENSG00000188816|ENST00000339992|HMX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8407592773438 2 569.318774 1136.623 0.67358 0.00038348 -3.3734 -0.0019205 -2.6998 -0.0015371 569.3171830995527 83.088 0.33492 83.15 82.969 83.304 0.062332 15 12 2 0 0 0 0.15936 1 45933 45933 38.151 11.268 1 1676100 46687 9701 31303 32046 54658 54658 0.06014889028460857 PLYNQMCYQD 10 Unmodified _PLYNQMCYQD_ 0 0 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.7625732421875 2 637.762649 1273.51074 0.0036107 2.3028E-06 -0.42915 -0.00027369 -0.42554 -0.00027139 637.7630398792855 37.665 0.25712 37.665 37.549 37.806 0 33 12 4 0 0 0 0.49559 1 20066 20066 25.399 20.169 1 4275200 46688 16408 31304 32047 54659 54659 -0.11507076102338942 PLYPCHYCSY 10 Unmodified _PLYPCHYCSY_ 0 0 0 ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142 ENST00000433921.5_1_2:219503064-219516433:-|nuORF ENST00000433921.5_1_2:219503064-219516433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.25830078125 2 623.257002 1244.49945 0.37662 0.00023473 0.40732 0.00025386 0.78394 0.0004886 623.2575258782655 70.92 0.23719 70.443 70.331 70.568 -0.47736 18 10 2 0 0 0 0.52888 1 38820 38820 14.838 3.198 1 1011600 46689 3139 31305 32048 54660 54660 -0.11301853405825568 PLYPFSLPY 9 Unmodified _PLYPFSLPY_ 0 0 0 ENSG00000105364|ENST00000253099|MRPL4 ENSG00000105364|ENST00000253099|MRPL4 ENSG00000105364|ENST00000253099|MRPL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1857299804688 3 366.195304 1095.56408 NaN NaN NaN NaN NaN NaN NaN 19.421 1 19.421 18.921 19.921 0 0 0 0 0.82015 1 9710 9710 2.9952 0 1 46690 2309 31306 32049 54661 54661 0.02012412734143254 PLYPPSSPP 9 Unmodified _PLYPPSSPP_ 0 0 0 REV__ENST00000352645.4_1_22:41754676-41754982:+|nuORF REV__ENST00000352645.4_1_22:41754676-41754982:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7479858398438 2 477.750193 953.485833 NaN NaN NaN NaN NaN NaN NaN 55.578 1 55.1 54.6 55.6 -0.47798 0 0 0 0.7453 1 30151 30151 7.9102 0 1 + 46691 25786 31307 32050 54662 54662 0.007229801489074816 PLYRPDSSSF 10 Unmodified _PLYRPDSSSF_ 0 0 0 nc|ENSG00000274211|O14512-2|SOCS7;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7 nc|ENSG00000274211|O14512-2|SOCS7 nc|ENSG00000274211|O14512-2|SOCS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.783203125 2 584.785296 1167.55604 0.61017 0.00035682 -2.2504 -0.001316 -1.6403 -0.00095921 584.783073795064 35.294 0.51842 31.199 30.973 31.491 -4.0951 83 31 4 0 0 0 0.077785 2 20560 20432;20560 51.63 18.844 1 18799000 46692 10899 31308 32051 54663;54664 54664 -0.021037662532762624 PLYSCLIV 8 Unmodified _PLYSCLIV_ 0 0 0 REV__ENSG00000169490|ENST00000456397|TM2D2 REV__ENSG00000169490|ENST00000456397|TM2D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2511901855469 2 454.251514 906.488476 0.43113 0.00019584 -0.6742 -0.00030626 -0.24307 -0.00011042 454.25121878139913 77.274 0.3346 77.324 77.128 77.463 0.05011 21 13 2 0 0 0 0.41521 1 42675 42675 42.968 3.9757 1 1801400 + 46693 22402 31309 32052 54665 54665 0.031491122822103534 PLYSCLIV 8 Unmodified _PLYSCLIV_ 0 0 0 REV__ENSG00000169490|ENST00000456397|TM2D2 REV__ENSG00000169490|ENST00000456397|TM2D2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 454.251514 906.488476 0.43113 0.00019584 -0.6742 -0.00030626 -0.24307 -0.00011042 454.25121878139913 77.274 0.3346 77.324 77.128 77.463 0.05011 0.0028695 -0.00085379 NaN 42.968 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1801400 + 46694 22402 31309 32052 0.031491122822103534 PLYSLNNCIL 10 Unmodified _PLYSLNNCIL_ 0 0 0 ENST00000436829.1_1_10:15879559-15880273:-|nuORF ENST00000436829.1_1_10:15879559-15880273:-|nuORF ENST00000436829.1_1_10:15879559-15880273:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3004150390625 2 575.302267 1148.58998 -0.62578 -0.00036002 -2.2443 -0.0012912 -2.8701 -0.0016512 575.3006305454057 77.7 0.26296 77.217 77.049 77.312 -0.4826 19 11 2 0 0 0 0.56348 1 42523 42523 13.042 1.4022 1 919410 46695 13337 31310 32053 54666 54666 0.021629389141025968 PLYSPRRER 9 Unmodified _PLYSPRRER_ 0 0 0 REV__nc|ENSG00000151079|P17658|KCNA6 REV__nc|ENSG00000151079|P17658|KCNA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5606384277344 3 391.887756 1172.64144 1.5576 0.00061041 1.0091 0.00039543 2.5667 0.0010058 391.8871951649198 35.881 0.61166 31.688 31.425 32.037 -4.1928 141 37 6 0 0 0 0.39143 1 21047 21047 12.873 5.3955 1 81220000 + 46696 29703 31311 32054 54667 54667 0.06202443723032047 PLYSSDQLY 9 Unmodified _PLYSSDQLY_ 0 0 0 REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3 REV__nc|ENSG00000173681|A2AJT9-3|BCLAF3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.8115234375 2 543.261122 1084.50769 0.4563 0.00024789 -1.2326 -0.00066964 -0.77633 -0.00042175 543.2602975385661 43.94 0.35231 39.175 38.95 39.302 -4.7648 34 22 2 0 0 0 0.203 1 26647 26647 9.3474 5.0182 1 9031700 + 46697 29792 31312 32055 54668 54668 -0.031182598931764005 PLYSSTLLEF 10 Unmodified _PLYSSTLLEF_ 0 0 0 REV__nc|ENSG00000156026|Q8NE86-2|MCU REV__nc|ENSG00000156026|Q8NE86-2|MCU MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1169.2890625 1 1169.60887 1168.60159 0.70187 0.00082091 1.5287 0.001788 2.2306 0.0026089 1170.6116490532436 69.441 0.22785 63.266 63.132 63.36 -6.1757 13 11 2 0 0 0 0.23745 1 45292 45292 5.7319 2.1354 1 17831000 + 46698 29719 31313 32056 54669 54669 0.02403459209108405 PLYSVKTFE 9 Unmodified _PLYSVKTFE_ 0 0 0 ENSG00000109832|ENST00000263576|DDX25 ENSG00000109832|ENST00000263576|DDX25 ENSG00000109832|ENST00000263576|DDX25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2887573242188 2 542.289682 1082.56481 NaN NaN NaN NaN NaN NaN NaN 35.137 1 35.165 34.665 35.665 0.027401 0 0 0 0.83049 1 18556 18556 3.9444 0.3479 1 46699 2678 31314 32057 54670 54670 0.026832073831883463 PLYTRLPPSAL 11 Unmodified _PLYTRLPPSAL_ 0 0 0 ENSG00000237412|ENST00000617714|PRSS56 ENSG00000237412|ENST00000617714|PRSS56 ENSG00000237412|ENST00000617714|PRSS56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.3555297851562 2 614.358431 1226.70231 -0.3436 -0.0002111 -3.7521 -0.0023051 -4.0957 -0.0025162 614.3560503488657 101.82 0.089012 101.77 101.73 101.81 -0.045853 6 2 3 0 0 0 0.6607 1 56582 56582 14.838 7.549 1 7155200 46700 10654 31315 32058 54671 54671 0.09802535982612426 PLYVNRMAF 9 Unmodified _PLYVNRMAF_ 0 0 0 REV__ENSG00000212710|ENST00000391403|CTAGE1 REV__ENSG00000212710|ENST00000391403|CTAGE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7907104492188 2 555.791869 1109.56919 0.46248 0.00025704 -2.0797 -0.0011559 -1.6173 -0.00089886 555.7904799871407 85.464 0.28581 85.464 85.295 85.581 0 27 11 3 0 0 0 0.53666 1 47317 47317 5.2307 0.47466 1 704730 + 46701 24268 31316 32059 54672 54672 0.018783933251143026 PLYVNRMAF 9 Unmodified _PLYVNRMAF_ 0 0 0 REV__ENSG00000212710|ENST00000391403|CTAGE1 REV__ENSG00000212710|ENST00000391403|CTAGE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7901000976562 2 555.791869 1109.56919 0.70104 0.00038963 0.39513 0.00021961 1.0962 0.00060924 555.7916728622087 85.943 0.24989 85.441 85.321 85.571 -0.502 12 9 2 0 0 0 0.46577 1 47029 47029 9.3474 0.75416 1 243840 + 46702 24268 31316 32059 54673 54673 0.018783933251143026 PLYWLYVI 8 Unmodified _PLYWLYVI_ 0 0 0 REV__nc|ENSG00000144320|Q9C0E8-2|LNPK REV__nc|ENSG00000144320|Q9C0E8-2|LNPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.5384521484375 3 356.203911 1065.5899 -0.36528 -0.00013011 -0.86254 -0.00030724 -1.2278 -0.00043735 356.20366318735273 21.627 0.3854 21.627 21.421 21.806 0 184 57 4 0 0 0 0.80975 1 10853 10853 0.45834 0 1 17290000 + 46703 20700 31317 32060 54674 54674 0.05973306976420645 PMCYTVITF 9 Carbamidomethyl (C),Oxidation (M) _PM(Oxidation (M))C(Carbamidomethyl (C))YTVITF_ PMC(1)YTVITF PM(1)CYTVITF PMC(47)YTVITF PM(47)CYTVITF 0 1 1 ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP ENSG00000101966|ENST00000371199|XIAP MSMS AL20221201_MKP_PDAC_01 4 574.2621459960938 2 574.261753 1146.50895 NaN NaN NaN NaN NaN NaN NaN 80.716 1 74.54 74.04 75.04 -6.1757 0 0 0 0.086291 1 52959 52959 46.921 32.083 1 46704 2001 31318 32061 54675 54675 199 341 -0.05844085120315867 PMERPIAAY 9 Unmodified _PMERPIAAY_ 0 0 0 REV__ENSG00000176903|ENST00000316836|PNMA1 REV__ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2704467773438 2 524.268227 1046.5219 1.1168 0.00058552 -0.27798 -0.00014574 0.83885 0.00043978 524.2677088519188 42.654 0.90055 37.97 37.544 38.444 -4.6846 198 58 5 0 0 0 0.10734 5 25661 25661;25683;25787;25913;26035 32.305 11.852 1 509670000 + 46705 22947 31319 32062 54676;54677;54678;54679;54680 54676 0.000501140541246059 PMERPIAAY 9 Unmodified _PMERPIAAY_ 0 0 0 REV__ENSG00000176903|ENST00000316836|PNMA1 REV__ENSG00000176903|ENST00000316836|PNMA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.7763671875 2 524.268227 1046.5219 1.1168 0.00058552 -0.27798 -0.00014574 0.83885 0.00043978 524.2677088519188 42.654 0.90055 37.97 37.544 38.444 -4.6846 198 58 5 0 0 0 0.1325 1 26035 26035 32.305 11.852 1 509670000 + 46706 22947 31319 32062 54681 54681 0.000501140541246059 PMERPIAAY 9 Unmodified _PMERPIAAY_ 0 0 0 REV__ENSG00000176903|ENST00000316836|PNMA1 REV__ENSG00000176903|ENST00000316836|PNMA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.268227 1046.5219 0.42604 0.00022336 1.6557 0.00086803 2.0817 0.0010914 524.2676141377067 37.752 0.4127 37.752 37.493 37.905 0 -0.10906 0.001973 NaN 32.305 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 11875000 + 46707 22947 31319 32062 0.000501140541246059 PMETLVMKL 9 Unmodified _PMETLVMKL_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2901611328125 2 531.290314 1060.56607 0.3296 0.00017512 0.59823 0.00031783 0.92783 0.00049295 531.2907716801911 60.435 0.34266 60.392 60.152 60.495 -0.04351 32 16 3 0 0 0 0.48152 1 32971 32971 8.5933 0.68312 1 14026000 + 46708 17834 31320 32063 54682 54682 0.03821382156093023 PMFKLAVM 8 Unmodified _PMFKLAVM_ 0 0 0 REV__nc|ENSG00000185518|Q7L1I2-2|SV2B REV__nc|ENSG00000185518|Q7L1I2-2|SV2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.9892578125 1 936.504543 935.497266 0.19895 0.00018632 0.21141 0.00019799 0.41036 0.00038431 936.5041316744788 91.269 0.27091 91.269 91.125 91.396 0 26 16 2 0 0 0 0.81107 1 50482 50482 0 0 1 359060 + 46709 23506 31321 32064 54683 54683 0.026937626470385112 PMGFTATF 8 Unmodified _PMGFTATF_ 0 0 0 ENST00000395002.6_1_4:89648108-89648159:-|nuORF ENST00000395002.6_1_4:89648108-89648159:-|nuORF ENST00000395002.6_1_4:89648108-89648159:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.206787109375 2 436.204564 870.394575 1.2773 0.00055717 1.0761 0.00046939 2.3534 0.0010266 436.20566892637186 33.568 0.47341 29.583 29.369 29.842 -3.9853 70 26 4 0 0 0 0.78849 1 19195 19195 9.3474 0.75416 1 53916000 46710 12755 31322 32065 54684 54684 -0.04580606820070443 PMIISYKEVMK 11 Unmodified _PMIISYKEVMK_ 0 0 0 ENSG00000153157|ENST00000283141|SYCP2L;ENST00000480294.1_1_6:10891760-10930631:+|nuORF ENSG00000153157|ENST00000283141|SYCP2L ENSG00000153157|ENST00000283141|SYCP2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.8591918945312 2 669.861634 1337.70872 NaN NaN NaN NaN NaN NaN NaN 70.283 1 69.804 69.304 70.304 -0.47903 0 0 0 0.93669 1 38437 38437 4.897 0 1 46711 6243 31323 32066 54685 54685 0.053369698274309485 PMIPKMKI 8 Unmodified _PMIPKMKI_ 0 0 0 REV__ENST00000479868.6_1_3:10354804-10354891:-|nuORF REV__ENST00000479868.6_1_3:10354804-10354891:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2847595214844 2 479.284834 956.555116 NaN NaN NaN NaN NaN NaN NaN 76.429 1 76.429 75.929 76.929 0 0 0 0 0.97444 1 42497 42497 0.79363 0 1 + 46712 27664 31324 32067 54686 54686 0.0751002457246841 PMKLPPPYK 9 Unmodified _PMKLPPPYK_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8071899414062 2 535.806988 1069.59942 1.0148 0.00054373 -0.39365 -0.00021092 0.62114 0.00033281 535.8068307839037 21.766 0.25787 19.031 18.917 19.175 -2.7348 20 13 2 0 0 0 0.4887 1 11722 11722 7.9102 2.6795 1 2245700 46713 4457;16195 31325 32068 54687 54687 0.06740751990287208 PMKSGGGGG 9 Unmodified _PMKSGGGGG_ 0 0 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.177490234375 2 374.176338 746.338123 0.71309 0.00026682 1.4545 0.00054424 2.1676 0.00081106 374.1769839133687 74.47 0.61143 73.994 73.714 74.326 -0.47588 51 25 3 0 0 0 0.62242 2 40709 40709;40807 0 0 1 1138600 46714 8707 31326 32069 54688;54689 54688 -0.04519234656709159 PMLIILSSLKH 11 Unmodified _PMLIILSSLKH_ 0 0 0 REV__ENSG00000149257|ENST00000358171|SERPINH1 REV__ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.9209289550781 3 417.921298 1250.74206 0.98862 0.00041317 -0.71083 -0.00029707 0.27779 0.0001161 417.9208383911759 45.892 0.51136 40.937 40.729 41.241 -4.9549 81 33 3 0 0 0 0.73114 1 28243 28243 1.3296 1.3296 1 18321000 + 46715 20988 31327 32070 54690 54690 0.1267233966166259 PMLLILLLPK 10 Unmodified _PMLLILLLPK_ 0 0 0 REV__ENST00000452532.1_1_X:55934878-55934956:+|nuORF REV__ENST00000452532.1_1_X:55934878-55934956:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.4822082519531 3 384.259251 1149.75592 NaN NaN NaN NaN NaN NaN NaN 61.106 1 61.106 60.606 61.606 0 0 0 0 1.0048 1 34076 34076 0.13989 0.13989 1 + 46716 27218 31328 32071 54691 54691 0.18703617160758768 PMLPIGLSDI 10 Unmodified _PMLPIGLSDI_ 0 0 0 ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.0073547363281 3 352.531699 1054.57327 1.3518 0.00047654 0.63172 0.0002227 1.9835 0.00069925 352.5320738760354 18.215 0.081253 15.593 15.574 15.655 -2.6215 7 5 2 0 0 0 0.23566 1 9578 9578 1.9064 1.9064 1 969310 46717 10283 31329 32072 54692 54692 0.048164380281832564 PMLRKPGK 8 Unmodified _PMLRKPGK_ 0 0 0 nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2;nc|ENSG00000158321|Q8WXX7-5|AUTS2 nc|ENSG00000158321|Q8WXX7-2|AUTS2 nc|ENSG00000158321|Q8WXX7-2|AUTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7832641601562 2 463.783847 925.553142 -0.0092501 -4.29E-06 -1.1878 -0.00055087 -1.197 -0.00055516 463.783272038528 35.524 0.22857 35.549 35.434 35.663 0.024971 23 10 3 0 0 0 0.80676 1 18775 18775 2.5775 0 1 2907900 46718 6580 31330 32073 54693 54693 0.08738731878861472 PMPETFWF 8 Unmodified _PMPETFWF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 352.1617126464844 3 352.161606 1053.46299 NaN NaN NaN NaN NaN NaN NaN 13.796 1 11.293 10.793 11.793 -2.5029 0 0 0 0.97444 1 6993 6993 0.45834 0 1 46719 6400;16288 31331 32074 54694 54694 -0.06160362240211725 PMPETFWF 8 Unmodified _PMPETFWF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 351.8291625976562 3 352.161606 1053.46299 NaN NaN NaN NaN NaN NaN NaN 14.237 1 11.734 11.234 12.234 -2.5029 0 0 0 0.97444 1 7219 7219 0.45834 0 1 46720 6400;16288 31331 32074 54695 54695 -0.06160362240211725 PMPNPPLSGLA 11 Unmodified _PMPNPPLSGLA_ 0 0 0 REV__nc|ENSG00000102908|O94916-2|NFAT5 REV__nc|ENSG00000102908|O94916-2|NFAT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1947326660156 3 365.195198 1092.56377 NaN NaN NaN NaN NaN NaN NaN 96.648 1 96.648 96.148 97.148 0 0 0 0 0.94201 1 53411 53411 0.36667 0 1 + 46721 18267 31332 32075 54696 54696 0.021186697426401224 PMPSCLTLPRA 11 Unmodified _PMPSCLTLPRA_ 0 0 0 REV__ENST00000428069.1_1_22:39907333-39907899:+|nuORF REV__ENST00000428069.1_1_22:39907333-39907899:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8756103515625 3 395.875471 1184.60458 -0.19259 -7.6243E-05 2.0081 0.00079496 1.8155 0.00071872 395.8759824349343 30.141 0.40594 30.171 29.894 30.3 0.030106 33 16 3 0 0 0 0.66428 1 15745 15745 6.2344 0 1 1494500 + 46722 26931 31333 32076 54697 54697 0.019666877906047375 PMPVVLKVRL 10 Unmodified _PMPVVLKVRL_ 0 0 0 ENSG00000078898|ENST00000170150|BPIFB2 ENSG00000078898|ENST00000170150|BPIFB2 ENSG00000078898|ENST00000170150|BPIFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5818176269531 3 384.582617 1150.72602 -0.6597 -0.00025371 -1.5864 -0.00061011 -2.2461 -0.00086382 384.5820887274378 34.038 0.33409 34.038 33.841 34.175 0 26 16 2 0 0 0 0.70951 1 17901 17901 0.77653 0.14971 1 6244000 46723 1257 31334 32077 54698 54698 0.1566867821543383 PMRATVPF 8 Unmodified _PMRATVPF_ 0 0 0 nc|ENSG00000138439|Q6P1L5-2|FAM117B;FAM117B|p.N500Kfs*8|1|0.14|ENSG00000138439|chr2:202765488-202765489|-/A|frameshift_variant;ENSG00000138439|ENST00000392238|FAM117B nc|ENSG00000138439|Q6P1L5-2|FAM117B nc|ENSG00000138439|Q6P1L5-2|FAM117B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.2534484863281 2 459.746931 917.479308 1.0909 0.00050153 -0.24256 -0.00011152 0.84832 0.00039001 459.7466033728702 42.671 0.63007 37.987 37.693 38.323 -4.6846 103 41 3 0 0 0 8.7369 1 25673 25673 28.487 0 1 84269000 46724 5055 31335 32078 54699 54699 0.017267637165332417 PMRGLPFT 8 Unmodified _PMRGLPFT_ 0 0 0 REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7472534179688 2 459.746931 917.479308 1.0909 0.00050153 -0.24256 -0.00011152 0.84832 0.00039001 459.7466033728702 42.671 0.63007 37.987 37.693 38.323 -4.6846 103 41 3 0 0 0 0.5284 3 25798 25673;25798;25927 32.117 0 1 84269000 + 46725 16928 31336 32079 54700;54701;54702 54701 0.017267637165332417 PMRGLPFT 8 Unmodified _PMRGLPFT_ 0 0 0 REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 459.746931 917.479308 0.50657 0.00023289 -1.2183 -0.00056009 -0.71169 -0.0003272 459.7453729621774 37.752 0.31632 37.752 37.549 37.865 0 -0.1033 -0.00098904 NaN 32.117 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2737700 + 46726 16928 31336 32079 0.017267637165332417 PMRGLPFT 8 Unmodified _PMRGLPFT_ 0 0 0 REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L REV__nc|ENSG00000001497|Q9Y4W2-3|LAS1L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 459.746931 917.479308 -0.098866 -4.5453E-05 2.7231 0.0012519 2.6242 0.0012065 459.7472126792193 38.098 0.26926 37.826 37.699 37.969 -0.27133 -0.028603 0.002635 NaN 32.117 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1059900 + 46727 16928 31336 32079 0.017267637165332417 PMRRCTEPVIE 11 Carbamidomethyl (C) _PMRRC(Carbamidomethyl (C))TEPVIE_ PMRRC(1)TEPVIE PMRRC(46)TEPVIE 0 1 0 REV__ENST00000305386.3_1_14:50088557-50088605:+|nuORF REV__ENST00000305386.3_1_14:50088557-50088605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 694.2908935546875 2 694.344671 1386.67479 -0.014075 -9.7726E-06 -1.0452 -0.00072572 -1.0593 -0.0007355 694.3438600192254 98.567 0.42988 98.567 98.441 98.871 0 35 14 5 0 0 0 0.073778 2 54416 54416;54422 45.74 30.491 1 13144000 + 46728 25366 31337 32080 54703;54704 54703 1055 -0.0030805861156295578 PMRRCTEPVIE 11 Carbamidomethyl (C) _PMRRC(Carbamidomethyl (C))TEPVIE_ PMRRC(1)TEPVIE PMRRC(53)TEPVIE 0 1 0 REV__ENST00000305386.3_1_14:50088557-50088605:+|nuORF REV__ENST00000305386.3_1_14:50088557-50088605:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.3439331054688 2 694.344671 1386.67479 0.86107 0.00059788 -1.7341 -0.001204 -0.873 -0.00060617 694.3435489751471 100.78 0.094025 94.607 94.541 94.635 -6.1757 11 6 3 0 0 0 0.038431 1 67495 67495 53.404 24.909 1 28068000 + 46729 25366 31337 32080 54705 54705 1055 -0.0030805861156295578 PMSYQLSQTY 10 Oxidation (M) _PM(Oxidation (M))SYQLSQTY_ PM(1)SYQLSQTY PM(44)SYQLSQTY 0 0 1 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.7774047851562 2 617.276446 1232.53834 0.78877 0.00048689 -2.1803 -0.0013458 -1.3915 -0.00085893 617.275039502201 49.713 0.25758 49.713 49.536 49.793 0 26 11 3 0 0 0 0.11824 1 27355 27355 43.772 12.504 1 4459000 46730 1209 31338 32081 54706 54706 204 -0.06862849570461549 PMVAEPSSKE 10 Unmodified _PMVAEPSSKE_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1075.23046875 1 1074.51359 1073.50631 0.30826 0.00033123 -0.38709 -0.00041594 -0.078836 -8.471E-05 1074.5127918574308 90.714 0.30866 90.22 90.027 90.336 -0.49457 41 17 3 0 0 0 0.71413 1 49480 49480 1.3295 0 1 4492500 46731 10743 31339 32082 54707 54707 -0.027502172536060243 PMWNGLTTEM 10 Unmodified _PMWNGLTTEM_ 0 0 0 REV__ENST00000267890.10_3_15:43170844-43170877:-|nuORF REV__ENST00000267890.10_3_15:43170844-43170877:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 590.296875 2 590.262284 1178.51002 NaN NaN NaN NaN NaN NaN NaN 58.318 1 52.244 51.744 52.744 -6.0745 0 0 0 0.51756 1 37361 37361 25.399 6.0374 1 + 46732 25115 31340 32083 54708 54708 -0.07209870751398739 PMWVKCPPRI 10 Unmodified _PMWVKCPPRI_ 0 0 0 ENST00000496804.5_1_1:39735123-39735222:+|nuORF ENST00000496804.5_1_1:39735123-39735222:+|nuORF ENST00000496804.5_1_1:39735123-39735222:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8897705078125 3 409.556073 1225.64639 0.56117 0.00022983 -3.3509 -0.0013724 -2.7897 -0.0011425 409.55535040688943 17.444 0.16861 14.858 14.736 14.904 -2.5866 48 30 2 0 0 0 0.67046 1 9099 9099 6.1918 1.7857 1 6983600 46733 14387 31341 32084 54709 54709 0.04259288269781791 PMYGNCYTF 9 Unmodified _PMYGNCYTF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1483459472656 3 365.813989 1094.42014 0.41201 0.00015072 -0.46666 -0.00017071 -0.054654 -1.9993E-05 365.81445799878253 91.626 0.35269 91.145 90.977 91.33 -0.48092 57 23 3 0 0 0 0.54444 2 50052 50052;50057 2.7352 1.6637 1 1623600 46734 2778 31342 32085 54710;54711 54710 -0.12329500359965095 PMYGNCYTF 9 Unmodified _PMYGNCYTF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 365.813989 1094.42014 0.07692 2.8138E-05 0.28087 0.00010275 0.35779 0.00013088 365.81481897171443 91.129 0.35413 91.129 90.971 91.325 0 -0.0079018 0.00053925 NaN 2.7352 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 969480 46735 2778 31342 32085 -0.12329500359965095 PMYGSQTPMY 10 Unmodified _PMYGSQTPMY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1694946289062 3 392.168432 1173.48347 0.020369 7.9883E-06 -0.28821 -0.00011303 -0.26784 -0.00010504 392.16925518321074 63.949 0.47861 63.949 63.756 64.235 0 53 19 4 0 0 0 0.7191 1 35788 35788 0.77653 0 1 958650 46736 9785 31343 32086 54712 54712 -0.09633559642725231 PMYLYHLS 8 Unmodified _PMYLYHLS_ 0 0 0 ENST00000431580.1_1_20:25715079-25715199:+|nuORF ENST00000431580.1_1_20:25715079-25715199:+|nuORF ENST00000431580.1_1_20:25715079-25715199:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7876892089844 2 512.252046 1022.48954 0.72263 0.00037017 2.5884 0.0013259 3.311 0.0016961 512.2534925613012 47.998 0.17615 47.96 47.89 48.066 -0.038647 12 8 2 0 0 0 8.7369 1 25856 25856 19.439 0 1 1007700 46737 13261 31344 32087 54713 54713 -0.02080673348905293 PMYLYHLS 8 Unmodified _PMYLYHLS_ 0 0 0 ENST00000431580.1_1_20:25715079-25715199:+|nuORF ENST00000431580.1_1_20:25715079-25715199:+|nuORF ENST00000431580.1_1_20:25715079-25715199:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 512.252046 1022.48954 1.0876 0.00055711 2.6769 0.0013713 3.7645 0.0019284 512.2533833977323 53.895 0.30664 48.084 47.938 48.245 -5.8103 0.062307 1.9644E-05 NaN 13.508 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 13445000 46738 13261 31344 32087 -0.02080673348905293 PNAGRGLVRL 10 Unmodified _PNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8187866210938 2 526.819807 1051.62506 0.14758 7.7747E-05 -0.69666 -0.00036701 -0.54908 -0.00028927 526.819544984678 38.749 0.28266 38.761 38.597 38.88 0.011456 32 13 3 0 0 0 4.0036E-05 1 20570 20570 107.19 56.332 1 10359000 46739 1880 31345 32088 54714 54714 0.1013136255696736 PNAGRGLVRL 10 Unmodified _PNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5486145019531 3 351.548964 1051.62506 0.060161 2.1149E-05 -0.53301 -0.00018738 -0.47285 -0.00016623 351.54886780494206 38.756 0.2823 38.767 38.618 38.9 0.011452 27 13 3 0 0 0 0.24511 1 20589 20589 30.703 11.446 1 6859500 46740 1880 31345 32088 54715 54715 0.1013136255696736 PNAGRGLVRL 10 Unmodified _PNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8197631835938 2 526.819807 1051.62506 NaN NaN NaN NaN NaN NaN NaN 38.849 1 38.86 38.36 39.36 0.011452 0 0 0 0.72101 1 20674 20674 13.042 5.1323 1 46741 1880 31345 32088 54716 54716 0.1013136255696736 PNAGRGLVRL 10 Unmodified _PNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5489807128906 3 351.548964 1051.62506 1.394 0.00049005 0.027789 9.7694E-06 1.4218 0.00049982 351.548818404431 43.296 0.45158 38.531 38.288 38.74 -4.7648 39 31 2 0 0 0 0.13008 2 26231 26231;26394 42.312 9.5268 1 26223000 46742 1880 31345 32088 54717;54718 54717 0.1013136255696736 PNANRIAL 8 Unmodified _PNANRIAL_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7537841796875 2 434.753601 867.49265 1.2649 0.00054993 -0.66376 -0.00028857 0.60116 0.00026135 434.7532773526742 37.824 0.40322 33.455 33.252 33.655 -4.3689 42 23 2 0 0 0 0.10909 2 22266 22148;22266 97.075 40.533 1 15845000 46743 4363 31346 32089 54719;54720 54720 0.053603378201387386 PNARETNY 8 Unmodified _PNARETNY_ 0 0 0 REV__ENSG00000074276|ENST00000261944|CDHR2 REV__ENSG00000074276|ENST00000261944|CDHR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2286376953125 2 482.727781 963.441008 0.10963 5.2923E-05 0.31091 0.00015008 0.42054 0.00020301 482.72908806064106 35.685 0.30135 35.685 35.534 35.836 0 24 14 2 0 0 0 0.52622 1 18884 18884 32.305 0 1 2539400 + 46744 17549 31347 32090 54721 54721 -0.04217450664430089 PNARSGLG 8 Unmodified _PNARSGLG_ 0 0 0 REV__nc|ENSG00000204396|Q9Y334-2|VWA7 REV__nc|ENSG00000204396|Q9Y334-2|VWA7 MSMS AL20221201_MKP_PDAC_01 4 386.2104797363281 2 386.209027 770.403501 NaN NaN NaN NaN NaN NaN NaN 78.943 1 72.768 72.268 73.268 -6.1757 0 0 0 0.9489 1 51711 51711 10.824 2.9138 1 + 46745 24165 31348 32091 54722 54722 0.00911502860640212 PNASLEAFL 9 Unmodified _PNASLEAFL_ 0 0 0 ENSG00000175229|ENST00000312006|GAL3ST3 ENSG00000175229|ENST00000312006|GAL3ST3 ENSG00000175229|ENST00000312006|GAL3ST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2542419433594 2 481.2531 960.491647 1.103 0.00053081 1.3235 0.00063696 2.4265 0.0011678 481.2538346814148 64.808 0.48631 58.632 58.431 58.917 -6.1757 60 26 3 0 0 0 0.1685 1 42002 42002 26.268 0.86883 1 54384000 46746 8501 31349 32092 54723 54723 0.00982078660570096 PNCSSSRI 8 Unmodified _PNCSSSRI_ 0 0 0 nc|ENSG00000175854|Q1ZZU3|SWI5 nc|ENSG00000175854|Q1ZZU3|SWI5 nc|ENSG00000175854|Q1ZZU3|SWI5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.4058227539062 1 863.403977 862.396701 0.86926 0.00075053 0.68177 0.00058864 1.551 0.0013392 863.4043669700006 60.499 0.44271 54.351 54.204 54.647 -6.1478 34 23 2 0 0 0 0.50673 1 38924 38924 34.102 1.9855 1 17416000 46747 16397 31350 32093 54724 54724 -0.04000178082253569 PNDFSVFGFPL 11 Unmodified _PNDFSVFGFPL_ 0 0 0 REV__nc|ENSG00000101489|Q9BZC1-3|CELF4 REV__nc|ENSG00000101489|Q9BZC1-3|CELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2059631347656 3 413.873001 1238.59717 -0.12009 -4.9703E-05 -1.4747 -0.00061035 -1.5948 -0.00066006 413.87261931267915 22.415 0.21798 22.438 22.315 22.533 0.022896 16 9 3 0 0 0 0.72952 1 11446 11446 0.50596 0.051438 1 933700 + 46748 18179 31351 32094 54725 54725 -0.012580052137764142 PNDILGPNEAF 11 Unmodified _PNDILGPNEAF_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7899780273438 2 593.790578 1185.5666 -0.14242 -8.4565E-05 -0.21713 -0.00012893 -0.35955 -0.0002135 593.7904090417154 45.37 0.19939 45.37 45.23 45.429 0 17 10 2 0 0 0 0.2736 1 24731 24731 28.495 0.86571 1 11434000 + 46749 18185 31352 32095 54726 54726 -0.018757835988708393 PNDILGPNEAF 11 Unmodified _PNDILGPNEAF_ 0 0 0 REV__ENSG00000101577|ENST00000677752|LPIN2 REV__ENSG00000101577|ENST00000677752|LPIN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 593.790578 1185.5666 -0.14242 -8.4565E-05 -0.21713 -0.00012893 -0.35955 -0.0002135 593.7904090417154 45.37 0.19939 45.37 45.23 45.429 0 0 0 NaN 28.495 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 11434000 + 46750 18185 31352 32095 -0.018757835988708393 PNDQYKFY 8 Unmodified _PNDQYKFY_ 0 0 0 ENSG00000189043|ENST00000339600|NDUFA4 ENSG00000189043|ENST00000339600|NDUFA4 ENSG00000189043|ENST00000339600|NDUFA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7962036132812 2 537.748182 1073.48181 0.28627 0.00015394 -1.8408 -0.00098987 -1.5545 -0.00083593 537.7472857835795 37.997 0.18256 37.997 37.925 38.108 0 14 8 2 0 0 0 8.7369 1 20230 20230 10.183 2.5744 1 1069500 46751 9722 31353 32096 54727 54727 -0.051991093447895764 PNDYSAVLVL 10 Unmodified _PNDYSAVLVL_ 0 0 0 REV__FAM3D|p.D149N|1|0.19|ENSG00000198643|chr3:58637154-58637154|C/T|missense_variant REV__FAM3D|p.D149N|1|0.19|ENSG00000198643|chr3:58637154-58637154|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7930908203125 2 545.792589 1089.57063 -0.42817 -0.00023369 1.4555 0.0007944 1.0273 0.0005607 545.7933534868091 76.942 0.44095 76.463 76.235 76.676 -0.47945 66 19 5 0 0 0 0.43662 1 42162 42162 29.082 29.082 1 7646900 + 46752 29341 31354 32097 54728 54728 0.029423058948623293 PNDYSAVLVL 10 Unmodified _PNDYSAVLVL_ 0 0 0 REV__FAM3D|p.D149N|1|0.19|ENSG00000198643|chr3:58637154-58637154|C/T|missense_variant REV__FAM3D|p.D149N|1|0.19|ENSG00000198643|chr3:58637154-58637154|C/T|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 545.792589 1089.57063 0.16321 8.9077E-05 0.37747 0.00020602 0.54067 0.0002951 545.7926216959979 76.377 0.31226 76.425 76.299 76.611 0.047943 -0.021003 -0.0010433 NaN 29.082 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1530200 + 46753 29341 31354 32097 0.029423058948623293 PNEERLNF 8 Unmodified _PNEERLNF_ 0 0 0 REV__ENST00000519029.1_1_8:67896909-67897419:-|nuORF REV__ENST00000519029.1_1_8:67896909-67897419:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2980041503906 2 509.751256 1017.48796 0.69034 0.0003519 0.38942 0.00019851 1.0798 0.00055041 509.7515594005229 66.029 0.21887 59.853 59.773 59.992 -6.1757 17 12 2 0 0 0 8.7369 1 42934 42934 11.64 2.2572 1 7300900 + 46754 28256 31355 32098 54729 54729 -0.020085911132923684 PNEIIHAL 8 Unmodified _PNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7554626464844 2 453.75581 905.497067 0.78775 0.00035745 -0.85333 -0.0003872 -0.065575 -2.9755E-05 453.75527549532205 60.057 0.25597 60.057 59.902 60.158 0 18 11 2 0 0 0 0.17811 1 33484 33484 78.728 26.46 1 1406700 46755 1704 31356 32099 54730 54730 0.04053802243026894 PNEIIHAL 8 Unmodified _PNEIIHAL_ 0 0 0 ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM ENSG00000099783|ENST00000325495|HNRNPM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 453.75581 905.497067 -0.1213 -5.5043E-05 -0.59264 -0.00026892 -0.71395 -0.00032396 453.7556915968915 60.435 0.2607 59.945 59.826 60.087 -0.49079 -0.056221 9.6465E-05 NaN 78.728 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2357300 46756 1704 31356 32099 0.04053802243026894 PNEKKLSESST 11 Unmodified _PNEKKLSESST_ 0 0 0 ENSG00000242120|ENST00000567252|MDFIC2;nc|ENSG00000242120|A0A1B0GVS7-2|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 ENSG00000242120|ENST00000567252|MDFIC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2109985351562 3 407.210342 1218.6092 NaN NaN NaN NaN NaN NaN NaN 27.691 1 27.72 27.22 28.22 0.028843 0 0 0 0.82644 1 14397 14397 5.8681 0.46543 1 46757 10693 31357 32100 54731 54731 0.008635667386897694 PNFEPDQLY 9 Unmodified _PNFEPDQLY_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7572021484375 2 561.758746 1121.50294 NaN NaN NaN NaN NaN NaN NaN 27.956 1 27.91 27.41 28.41 -0.046408 0 0 0 0.7243 1 14420 14420 8.5933 0 1 + 46758 17004 31358 32101 54732 54732 -0.05295144035949306 PNFNWPYEPF 10 Unmodified _PNFNWPYEPF_ 0 0 0 REV__ENSG00000268041|ENST00000597630|ERFL REV__ENSG00000268041|ENST00000597630|ERFL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.7952880859375 2 655.795663 1309.57677 1.5616 0.0010241 -2.1962 -0.0014402 -0.63458 -0.00041616 655.7938787370074 81.23 0.28767 81.29 81.138 81.425 0.059929 17 10 2 0 0 0 0.6606 1 44951 44951 7.2892 0.56607 1 2411900 + 46759 24615 31359 32102 54733 54733 -0.06563175873634464 PNFNWPYEPF 10 Unmodified _PNFNWPYEPF_ 0 0 0 REV__ENSG00000268041|ENST00000597630|ERFL REV__ENSG00000268041|ENST00000597630|ERFL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 655.795663 1309.57677 0.70652 0.00046333 -2.5468 -0.0016702 -1.8403 -0.0012069 656.2957371145956 81.904 0.32095 81.409 81.236 81.557 -0.4952 0.059511 -0.0001357 NaN 7.2892 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 844000 + 46760 24615 31359 32102 -0.06563175873634464 PNFNWPYEPF 10 Unmodified _PNFNWPYEPF_ 0 0 0 REV__ENSG00000268041|ENST00000597630|ERFL REV__ENSG00000268041|ENST00000597630|ERFL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 655.795663 1309.57677 1.5616 0.0010241 -2.1962 -0.0014402 -0.63458 -0.00041616 655.7938787370074 81.23 0.28767 81.29 81.138 81.425 0.059929 -0.059511 0.00032422 NaN 7.2892 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2411900 + 46761 24615 31359 32102 -0.06563175873634464 PNFQNRER 8 Unmodified _PNFQNRER_ 0 0 0 REV__nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L REV__nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8984375 2 530.767771 1059.52099 0.17326 9.1962E-05 -3.3824 -0.0017953 -3.2091 -0.0017033 531.2657344568398 51.831 0.44745 51.772 51.513 51.961 -0.058914 41 21 3 0 0 0 8.7369 1 27970 27970 14.582 2.0501 1 14377000 + 46762 29526 31360 32103 54734 54734 -0.006389642705926235 PNFTQHVREQ 10 Unmodified _PNFTQHVREQ_ 0 0 0 nc|ENSG00000107831|P55075-3|FGF8;ENSG00000107831|ENST00000320185|FGF8 nc|ENSG00000107831|P55075-3|FGF8 nc|ENSG00000107831|P55075-3|FGF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.8767395019531 3 419.210788 1254.61053 0.24131 0.00010116 1.1932 0.0005002 1.4345 0.00060136 419.2114860356837 41.061 0.1668 40.758 40.697 40.863 -0.30304 10 7 2 0 0 0 0.69377 1 21746 21746 1.7423 0.52744 1 1600800 46763 2521 31361 32104 54735 54735 -0.00658754381856852 PNFTQHVREQ 10 Unmodified _PNFTQHVREQ_ 0 0 0 nc|ENSG00000107831|P55075-3|FGF8;ENSG00000107831|ENST00000320185|FGF8 nc|ENSG00000107831|P55075-3|FGF8 nc|ENSG00000107831|P55075-3|FGF8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 419.210788 1254.61053 0.24131 0.00010116 1.1932 0.0005002 1.4345 0.00060136 419.2114860356837 41.061 0.1668 40.758 40.697 40.863 -0.30304 0 0 NaN 1.7423 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1600800 46764 2521 31361 32104 -0.00658754381856852 PNGIVDTII 9 Unmodified _PNGIVDTII_ 0 0 0 REV__nc|ENSG00000108604|Q92925-3|SMARCD2 REV__nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2693176269531 2 471.26875 940.522947 0.58729 0.00027677 0.69832 0.0003291 1.2856 0.00060587 471.26901943781934 75.795 0.35345 75.318 75.126 75.479 -0.47714 28 15 2 0 0 0 0.59532 1 41581 41581 1.6526 0.85899 1 1439900 + 46765 18623 31362 32105 54736 54736 0.0503065169467618 PNGIVDTII 9 Unmodified _PNGIVDTII_ 0 0 0 REV__nc|ENSG00000108604|Q92925-3|SMARCD2 REV__nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 471.26875 940.522947 0.58729 0.00027677 0.69832 0.0003291 1.2856 0.00060587 471.26901943781934 75.795 0.35345 75.318 75.126 75.479 -0.47714 0 0 NaN 1.6526 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1439900 + 46766 18623 31362 32105 0.0503065169467618 PNGSALLLS 9 Unmodified _PNGSALLLS_ 0 0 0 ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;ENST00000417521.5_1_6:30861115-30864801:+|nuORF ENSG00000204580|ENST00000376568|DDR1 ENSG00000204580|ENST00000376568|DDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 871.4901123046875 1 871.488359 870.481082 -0.54835 -0.00047788 0.87322 0.000761 0.32488 0.00028313 871.4892873469604 65.769 0.16611 65.285 65.148 65.314 -0.48428 10 6 2 0 0 0 0.1773 1 35865 35865 25.399 0 1 1118000 46767 10304 31363 32106 54737 54737 0.04066096006158659 PNHSTSTQ 8 Unmodified _PNHSTSTQ_ 0 0 0 REV__ENSG00000156925|ENST00000287538|ZIC3 REV__ENSG00000156925|ENST00000287538|ZIC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.25244140625 2 436.198856 870.383159 NaN NaN NaN NaN NaN NaN NaN 84.17 1 84.17 83.67 84.67 0 0 0 0 0.97444 1 46667 46667 0.6015 0 1 + 46768 21353 31364 32107 54738 54738 -0.057217125898660015 PNIEFTIQF 9 Unmodified _PNIEFTIQF_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.787841796875 2 554.787307 1107.56006 0.099764 5.5348E-05 -0.56015 -0.00031077 -0.46039 -0.00025542 554.7879555956755 76.767 0.3673 76.287 76.111 76.479 -0.47945 41 17 3 0 0 0 0.2143 1 41960 41960 21.747 4.8044 1 5488100 + 46769 23975 31365 32108 54739 54739 0.010583232404314913 PNIFNNRF 8 Unmodified _PNIFNNRF_ 0 0 0 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 REV__nc|ENSG00000103534|Q6UXY8-4|TMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2646789550781 2 511.264333 1020.51411 0.4708 0.00024071 -1.7454 -0.00089238 -1.2746 -0.00065168 511.2633901383536 67.988 0.40646 67.505 67.208 67.615 -0.48218 45 18 3 0 0 0 0.78849 1 37067 37067 9.3474 1.4373 1 5241700 + 46770 18313 31366 32109 54740 54740 0.004677228488503715 PNIGLCSDGK 10 Unmodified _PNIGLCSDGK_ 0 0 0 REV__ENSG00000119720|ENST00000354366|NRDE2 REV__ENSG00000119720|ENST00000354366|NRDE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7846069335938 2 502.247492 1002.48043 -0.18605 -9.3445E-05 -2.6566 -0.0013343 -2.8426 -0.0014277 502.24602229887734 65.504 0.28886 65.02 64.835 65.124 -0.48428 19 13 2 0 0 0 0.23057 1 35813 35813 13.042 5.7532 1 1548500 + 46771 19209 31367 32110 54741 54741 -0.020710667052185272 PNIIETISS 9 Unmodified _PNIIETISS_ 0 0 0 REV__nc|ENSG00000168918|Q92835-3|INPP5D REV__nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.5204467773438 1 973.520053 972.512776 0.16928 0.0001648 -0.44058 -0.00042891 -0.2713 -0.00026412 973.5195915529036 58.899 0.46931 58.899 58.654 59.123 0 60 20 4 0 0 0 0.55144 1 32927 32927 4.3292 0 1 18054000 + 46772 22361 31368 32111 54742 54742 0.025420439694244124 PNIKVSREF 9 Unmodified _PNIKVSREF_ 0 0 0 REV__ENSG00000018699|ENST00000317907|TTC27 REV__ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3064575195312 2 545.306198 1088.59784 0.12947 7.06E-05 0.090255 4.9217E-05 0.21972 0.00011982 545.3062642339672 34.386 0.46484 34.413 34.184 34.648 0.027401 47 21 3 0 0 0 0.25681 1 18233 18233 19.257 1.8143 1 10382000 + 46773 17097 31369 32112 54743 54743 0.057088342259021374 PNIPIELIP 9 Unmodified _PNIPIELIP_ 0 0 0 ENSG00000143702|ENST00000366542|CEP170;nc|ENSG00000143702|Q5SW79-2|CEP170;nc|ENSG00000143702|Q5SW79-3|CEP170;ENST00000502249.6_1_4:119435248-119475252:+|nuORF ENSG00000143702|ENST00000366542|CEP170 ENSG00000143702|ENST00000366542|CEP170 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2559204101562 2 503.302593 1004.59063 0.023349 1.1751E-05 -1.6116 -0.00081111 -1.5882 -0.00079936 503.80082112179105 71.059 0.31226 70.582 70.434 70.747 -0.47735 36 13 4 0 0 0 0.16785 1 38827 38827 11.64 6.4096 1 3207300 46774 5544 31370 32113 54744 54744 0.08852101625473097 PNIQAVLL 8 Unmodified _PNIQAVLL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2691650390625 2 434.268553 866.522553 -0.25329 -0.00011 1.1535 0.00050093 0.90022 0.00039094 434.2690531267932 78.493 0.48141 78.007 77.732 78.213 -0.48596 29 21 2 0 0 0 0.79669 1 43078 43078 8.5933 0 1 1246000 46775 9238;9236 31371 32114 54745 54745 0.08395276765475046 PNIVGCHF 8 Unmodified _PNIVGCHF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7150573730469 2 443.71563 885.416708 -0.47004 -0.00020857 0.75608 0.00033548 0.28604 0.00012692 443.7158567551282 20.03 0.10729 20.058 20.006 20.113 0.028355 7 4 2 0 0 0 0.80624 1 10146 10146 2.8892 0 1 400090 + 46776 22751 31372 32115 54746 54746 -0.03058382351639466 PNIVGCHF 8 Unmodified _PNIVGCHF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.71563 885.416708 -0.47004 -0.00020857 0.75608 0.00033548 0.28604 0.00012692 443.7158567551282 20.03 0.10729 20.058 20.006 20.113 0.028355 0 0 NaN 2.8892 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 400090 + 46777 22751 31372 32115 -0.03058382351639466 PNIYILDYL 9 Unmodified _PNIYILDYL_ 0 0 0 ENST00000474094.1_1_6:74502386-74513776:+|nuORF;nc|ENSG00000156535|Q6YHK3-2|CD109;nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109 ENST00000474094.1_1_6:74502386-74513776:+|nuORF ENST00000474094.1_1_6:74502386-74513776:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.801025390625 2 562.305332 1122.59611 0.73149 0.00041132 -0.27661 -0.00015554 0.45488 0.00025578 562.3052957122645 48.041 0.17585 47.688 47.595 47.771 -0.3526 13 8 2 0 0 0 0.18118 1 25814 25814 18.135 0 1 4381900 46778 6466 31373 32116 54747 54747 0.039717804172596516 PNKDTTYLSQ 10 Unmodified _PNKDTTYLSQ_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5284118652344 3 389.527782 1165.56152 0.47213 0.00018391 0.56191 0.00021888 1.034 0.00040279 389.528229771138 40.353 0.39511 40.056 39.824 40.22 -0.29716 69 18 6 0 0 0 0.66569 1 21357 21357 3.5871 0 1 81939000 46779 3541 31374 32117 54748 54748 -0.014640874614769928 PNKDTTYLSQ 10 Unmodified _PNKDTTYLSQ_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5279541015625 3 389.527782 1165.56152 0.27288 0.00010629 0.39159 0.00015254 0.66447 0.00025883 389.528097225077 39.995 0.31698 40 39.811 40.128 0.0050545 50 14 5 0 0 0 0.66569 1 21266 21266 3.5871 0 1 10073000 46780 3541 31374 32117 54749 54749 -0.014640874614769928 PNKFVQLQM 9 Unmodified _PNKFVQLQM_ 0 0 0 REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF REV__ENST00000489313.1_1_1:32374455-32375805:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.796142578125 2 552.797152 1103.57975 1.2418 0.00068646 2.6339 0.001456 3.8757 0.0021425 552.7983744924753 53.924 0.59871 48.059 47.684 48.283 -5.8653 100 36 3 0 0 0 0.12424 1 33890 33890 30.637 7.9003 1 89041000 + 46781 27858 31375 32118 54750 54750 0.0321037597952909 PNKHISLQY 9 Unmodified _PNKHISLQY_ 0 0 0 REV__nc|ENSG00000163399|P05023-2|ATP1A1 REV__nc|ENSG00000163399|P05023-2|ATP1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.201416015625 3 367.201341 1098.58219 1.519 0.00055779 1.0391 0.00038157 2.5581 0.00093935 367.5363705337363 31.037 0.3633 27.54 27.343 27.706 -3.497 25 16 2 0 0 0 0.094149 1 17497 17497 26.021 6.3947 1 53429000 + 46782 21760 31376 32119 54751 54751 0.03684547708849095 PNKRQHIY 8 Unmodified _PNKRQHIY_ 0 0 0 ENST00000449600.1_1_2:110936461-110959062:-|nuORF;ENST00000496524.5_1_2:110922048-110962545:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1 ENST00000449600.1_1_2:110936461-110959062:-|nuORF ENST00000449600.1_1_2:110936461-110959062:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2911987304688 2 528.290882 1054.56721 -0.022481 -1.1876E-05 0.088109 4.6547E-05 0.065629 3.4671E-05 528.290888152385 37.93 0.18571 37.948 37.839 38.025 0.01704 14 8 2 0 0 0 0.67481 1 20163 20163 19.439 1.304 1 2116400 46783 5583 31377 32120 54752 54752 0.042111006315280974 PNKVLILA 8 Unmodified _PNKVLILA_ 0 0 0 ENST00000503063.5_1_17:48629318-48633020:+|nuORF;ENST00000511937.5_1_17:48628543-48633020:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20 ENST00000503063.5_1_17:48629318-48633020:+|nuORF ENST00000503063.5_1_17:48629318-48633020:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2877197265625 2 434.286746 866.558939 -0.43479 -0.00018882 1.9947 0.00086625 1.5599 0.00067743 434.2875948851517 105.13 0.040764 105.08 105.07 105.11 -0.048737 15 10 2 0 0 0 0.80975 1 58353 58353 0.79363 0 1 5930500 46784 332 31378 32121 54753 54753 0.12032153662187284 PNKWFTDQL 9 Unmodified _PNKWFTDQL_ 0 0 0 REV__ENSG00000214711|ENST00000403897|CAPN14 REV__ENSG00000214711|ENST00000403897|CAPN14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8628540039062 3 383.529346 1147.56621 0.47195 0.00018101 1.0474 0.0004017 1.5193 0.0005827 383.5297997946285 25.065 0.44249 22.182 21.945 22.387 -2.8831 108 41 3 0 0 0 0.54444 1 13608 13608 2.7352 0 1 38920000 + 46785 24321 31379 32122 54754 54754 -0.001671585280519139 PNLAFLRF 8 Unmodified _PNLAFLRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.282958984375 2 489.281995 976.549437 1.1562 0.00056571 -1.0555 -0.00051643 0.10072 4.9281E-05 489.2822021406582 97.021 0.26656 90.846 90.708 90.974 -6.1757 26 15 2 0 0 0 0.069468 1 64301 64301 123.1 69.521 1 15999000 46786 10025 31380 32123 54755 54755 0.06022385376661532 PNLAPPAPT 9 Unmodified _PNLAPPAPT_ 0 0 0 ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2423095703125 2 439.242535 876.470518 0.6248 0.00027444 -0.57537 -0.00025273 0.049433 2.1713E-05 439.24240419342937 57.242 0.30201 57.242 57.022 57.324 0 22 13 2 0 0 0 0.16226 1 31801 31801 26.884 2.8631 1 1676800 46787 12759 31381 32124 54756 54756 0.027341133516983973 PNLAPPAPT 9 Unmodified _PNLAPPAPT_ 0 0 0 ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF ENST00000395042.1_1_20:62710648-62710726:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 439.242535 876.470518 1.3135 0.00057693 0.0032699 1.4363E-06 1.3167 0.00057837 439.2425480490377 63.788 0.37624 57.612 57.405 57.782 -6.1757 0.18538 0.00036285 NaN 26.884 36 20 2 NaN NaN NaN NaN 0 NaN NaN 0 11854000 46788 12759 31381 32124 0.027341133516983973 PNLERFKMD 9 Unmodified _PNLERFKMD_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8626708984375 3 383.862219 1148.56483 NaN NaN NaN NaN NaN NaN NaN 22.061 1 22.084 21.584 22.584 0.022896 0 0 0 0.84737 1 11213 11213 0.96228 0 1 + 46789 24360 31382 32125 54757 54757 -0.003511158884748511 PNLMQNYNHQC 11 Unmodified _PNLMQNYNHQC_ 0 0 0 nc|ENSG00000121964|Q4AE62-5|GTDC1 nc|ENSG00000121964|Q4AE62-5|GTDC1 nc|ENSG00000121964|Q4AE62-5|GTDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 681.2920532226562 2 681.289896 1360.56524 NaN NaN NaN NaN NaN NaN NaN 80.574 1 80.574 80.074 81.074 0 0 0 0 0.94184 1 44737 44737 1.1933 0.12188 1 46790 16161 31383 32126 54758 54758 -0.10062064230896794 PNLRGIFVR 9 Unmodified _PNLRGIFVR_ 0 0 0 REV__ENST00000557435.1_1_14:70234873-70235008:+|nuORF REV__ENST00000557435.1_1_14:70234873-70235008:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7681884765625 2 536.324725 1070.6349 -0.27559 -0.00014781 -1.1926 -0.00063961 -1.4682 -0.00078742 536.3240661271059 51.498 0.26273 51.084 50.949 51.212 -0.41351 33 13 3 0 0 0 0.20727 1 27831 27831 1.8442 0 1 21075000 + 46791 18098 31384 32127 54759 54759 0.10240550562321005 PNLRKNVL 8 Unmodified _PNLRKNVL_ 0 0 0 ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1 ENST00000521086.6_1_8:54891227-54912595:-|nuORF ENST00000521086.6_1_8:54891227-54912595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2990417480469 2 477.298176 952.581799 0.77196 0.00036846 0.27143 0.00012955 1.0434 0.00049801 477.29836591118146 28.525 0.34322 25.377 25.23 25.573 -3.1482 30 17 2 0 0 0 0.079151 2 15897 15897;16011 109.63 54.856 1 11616000 46792 9588 31385 32128 54760;54761 54760 0.10361172779664685 PNLSLPSDL 9 Unmodified _PNLSLPSDL_ 0 0 0 ENST00000565121.1_1_15:75645991-75646635:+|nuORF;ENST00000567393.5_1_15:75645991-75647372:+|nuORF ENST00000565121.1_1_15:75645991-75646635:+|nuORF ENST00000565121.1_1_15:75645991-75646635:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2587280273438 2 478.258382 954.502212 0.28216 0.00013494 -0.18352 -8.7768E-05 0.098639 4.7175E-05 478.25830513787946 58.916 0.4935 58.916 58.699 59.192 0 45 21 3 0 0 0 0.14602 1 32853 32853 28.487 5.3384 1 6636200 46793 15398 31386 32129 54762 54762 0.023140613150076206 PNLSPPAE 8 Unmodified _PNLSPPAE_ 0 0 0 ENSG00000143373|ENST00000336715|ZNF687;nc|ENSG00000143373|Q8N1G0-2|ZNF687 ENSG00000143373|ENST00000336715|ZNF687 ENSG00000143373|ENST00000336715|ZNF687 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7110595703125 2 412.711068 823.407583 0.02405 9.9259E-06 0.039268 1.6206E-05 0.063319 2.6132E-05 412.7109205890999 58.907 0.32167 58.907 58.723 59.045 0 24 14 2 0 0 0 0.6895 1 32878 32878 18.135 3.5533 1 2424300 46794 5499 31387 32130 54763 54763 -0.011184524363329729 PNLSSTVWT 9 Unmodified _PNLSSTVWT_ 0 0 0 REV__nc|ENSG00000101331|Q9NUG4-3|CCM2L REV__nc|ENSG00000101331|Q9NUG4-3|CCM2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2543029785156 2 502.756007 1003.49746 0.069036 3.4708E-05 -2.043 -0.0010271 -1.9739 -0.0009924 502.7546557991361 55.315 0.31856 55.247 55.097 55.415 -0.068741 27 15 2 0 0 0 0.17275 1 30061 30061 15.847 0 1 3384800 + 46795 18159 31388 32131 54764 54764 -0.004148228277585986 PNLSVPQV 8 Unmodified _PNLSVPQV_ 0 0 0 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 ENSG00000164946|ENST00000380880|FREM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4786987304688 1 853.477794 852.470518 0.64254 0.00054839 0.49077 0.00041886 1.1333 0.00096725 853.4782233592399 51.338 0.24451 51.338 51.187 51.431 0 16 10 2 0 0 0 0.19688 1 28322 28322 71.134 9.7761 1 2033700 46796 7271 31389 32132 54765 54765 0.0383811335171913 PNMIGEKKFC 10 Unmodified _PNMIGEKKFC_ 0 0 0 REV__ENSG00000123213|ENST00000380985|NLN REV__ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5280151367188 3 389.528072 1165.56239 0.47213 0.00018391 -0.18121 -7.0588E-05 0.29092 0.00011332 389.528229771138 40.353 0.39511 40.056 39.824 40.22 -0.29716 69 18 6 0 0 0 0.6606 1 21257 21257 3.8763 0.28927 1 81939000 + 46797 19377 31390 32133 54766 54766 -0.013772876177654325 PNMIGEKKFC 10 Unmodified _PNMIGEKKFC_ 0 0 0 REV__ENSG00000123213|ENST00000380985|NLN REV__ENSG00000123213|ENST00000380985|NLN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.528072 1165.56239 -0.0076791 -2.9912E-06 -0.02303 -8.9707E-06 -0.030709 -1.1962E-05 389.5282871278343 39.962 0.31787 39.962 39.792 40.11 0 -0.044024 0.00016067 NaN 3.8763 59 15 5 NaN NaN NaN NaN 0 NaN NaN 0 60064000 + 46798 19377 31390 32133 -0.013772876177654325 PNMKKLGNF 9 Unmodified _PNMKKLGNF_ 0 0 0 REV__nc|ENSG00000133063|Q13231-2|CHIT1 REV__nc|ENSG00000133063|Q13231-2|CHIT1 MSMS AL20221201_MKP_PDAC_01 4 350.1918640136719 3 350.191788 1047.55354 NaN NaN NaN NaN NaN NaN NaN 23.124 1 20.345 19.845 20.845 -2.7784 0 0 0 0.36554 1 12492 12492 15.248 4.4246 1 + 46799 19904 31391 32134 54767 54767 0.03166106808043878 PNNELHGRI 9 Unmodified _PNNELHGRI_ 0 0 0 REV__nc|ENSG00000089157|P05388-2|RPLP0 REV__nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5211791992188 3 350.521074 1048.54139 -0.49162 -0.00017232 0.55793 0.00019557 0.066303 2.3241E-05 350.5211525824214 18.525 0.16523 18.525 18.455 18.62 0 30 16 3 0 0 0 0.5029 1 9208 9208 4.5289 0 1 822160 + 46800 17835 31392 32135 54768 54768 0.019062063892533843 PNNFHIVTR 9 Unmodified _PNNFHIVTR_ 0 0 0 REV__ENST00000418879.1_1_6:137865036-137865375:-|nuORF REV__ENST00000418879.1_1_6:137865036-137865375:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7696533203125 2 549.296165 1096.57778 0.67885 0.00037289 -1.4562 -0.00079989 -0.77736 -0.000427 549.2955330060654 57.423 0.16667 57.423 57.324 57.49 0 10 6 2 0 0 0 0.20727 1 31920 31920 7.9102 0 1 657950 + 46801 26808 31393 32136 54769 54769 0.03335083285946894 PNNLPPQR 8 Unmodified _PNNLPPQR_ 0 0 0 REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2569885253906 2 468.256508 934.498464 -0.22716 -0.00010637 0.54953 0.00025732 0.32237 0.00015095 468.25677044196294 27.013 0.21056 27.013 26.909 27.12 0 18 9 3 0 0 0 0.57045 1 13894 13894 28.487 5.3384 1 2581000 + 46802 28289 31394 32137 54770 54770 0.0285943633180068 PNNLPPQR 8 Unmodified _PNNLPPQR_ 0 0 0 REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF REV__ENST00000521587.1_1_8:95987590-95993104:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 468.2562561035156 2 468.256508 934.498464 NaN NaN NaN NaN NaN NaN NaN 29.651 1 26.349 25.849 26.849 -3.3016 0 0 0 0.33381 1 16688 16688 60.39 13.469 1 + 46803 28289 31394 32137 54771 54771 0.0285943633180068 PNNPAFGF 8 Unmodified _PNNPAFGF_ 0 0 0 nc|ENSG00000149639|O94964-1|MTCL2;ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2;nc|ENSG00000149639|O94964-4|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 nc|ENSG00000149639|O94964-1|MTCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.4032592773438 1 863.404629 862.397353 0.86926 0.00075053 -0.073295 -6.3284E-05 0.79597 0.00068724 863.4043669700006 60.499 0.44271 54.351 54.204 54.647 -6.1478 34 23 2 0 0 0 0.61462 1 39060 39060 24.674 4.2203 1 17416000 46804 6029 31395 32138 54772 54772 -0.039350153708937796 PNNSTPFTP 9 Unmodified _PNNSTPFTP_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7327880859375 2 487.732532 973.45051 0.18299 8.9252E-05 1.1296 0.00055096 1.3126 0.00064021 487.73304538956427 37.64 0.25345 37.64 37.51 37.764 0 18 12 2 0 0 0 0.10734 1 20056 20056 32.305 2.0807 1 1942900 + 46805 22428 31396 32139 54773 54773 -0.03727682378894315 PNNSTPFTP 9 Unmodified _PNNSTPFTP_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 487.732532 973.45051 0.18299 8.9252E-05 1.1296 0.00055096 1.3126 0.00064021 487.73304538956427 37.64 0.25345 37.64 37.51 37.764 0 0 0 NaN 32.305 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1942900 + 46806 22428 31396 32139 -0.03727682378894315 PNPGGISY 8 Unmodified _PNPGGISY_ 0 0 0 REV__ENSG00000196865|ENST00000369301|NHLRC2 REV__ENSG00000196865|ENST00000369301|NHLRC2 MSMS AL20221201_MKP_PDAC_01 4 402.6982116699219 2 402.697961 803.381368 NaN NaN NaN NaN NaN NaN NaN 27.32 1 24.283 23.783 24.783 -3.0365 0 0 0 0.77249 1 15128 15128 24.674 3.8027 1 + 46807 23876 31397 32140 54774 54774 -0.028187216078094934 PNPPNLELLL 10 Unmodified _PNPPNLELLL_ 0 0 0 REV__nc|ENSG00000168405|Q9Y471-4|CMAHP REV__nc|ENSG00000168405|Q9Y471-4|CMAHP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3253784179688 2 560.324057 1118.63356 0.17249 9.6653E-05 1.0776 0.00060383 1.2501 0.00070048 560.324750068977 69.452 0.73701 68.973 68.445 69.182 -0.47903 73 31 4 0 0 0 0.29752 1 38038 38038 27.629 0.74515 1 9217500 + 46808 29769 31398 32141 54775 54775 0.07898871682914432 PNPYFYQNL 9 Unmodified _PNPYFYQNL_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8533325195312 3 385.85383 1154.53966 -0.59661 -0.0002302 0.53199 0.00020527 -0.06462 -2.4934E-05 385.853995965299 17.35 0.21315 17.35 17.275 17.488 0 46 40 2 0 0 0 0.58145 1 8570 8570 2.4985 0 1 444790 46809 529 31399 32142 54776 54776 -0.03142847419371719 PNQKRLTL 8 Unmodified _PNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2955017089844 2 485.295633 968.576714 0.9117 0.00044245 0.4898 0.0002377 1.4015 0.00068015 485.295851976849 30.292 0.31988 26.795 26.655 26.975 -3.497 26 15 2 0 0 0 0.11214 2 17181 17060;17181 96.111 27.415 1 15489000 46810 977 31400 32143 54777;54778 54778 0.09116868917044485 PNQKRLTLL 9 Unmodified _PNQKRLTLL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8375244140625 2 541.837665 1081.66078 0.43288 0.00023455 0.42592 0.00023078 0.8588 0.00046533 541.8379194433315 40.469 0.27663 40.474 40.337 40.614 0.0050583 26 12 3 0 0 0 0.0087807 1 21552 21552 106.94 57.007 1 4038700 46811 977 31401 32144 54779 54779 0.12321400013956918 PNRDYFCQ 8 Unmodified _PNRDYFCQ_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7249145507812 2 521.724184 1041.43381 0.39512 0.00020615 0.95 0.00049564 1.3451 0.00070179 521.7245848777517 86.305 0.50004 85.801 85.544 86.044 -0.50318 47 20 3 0 0 0 0.80311 1 47263 47263 4.756 1.8668 1 4871900 46812 7972 31402 32145 54780 54780 -0.08524506536514309 PNRGAKVC 8 Unmodified _PNRGAKVC_ 0 0 0 REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000153253|Q9NY46-4|SCN3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2324523925781 2 422.726529 843.438506 -0.47288 -0.0001999 -1.242 -0.00052504 -1.7149 -0.00072494 422.7260436120538 56.125 0.28939 56.056 55.904 56.194 -0.068741 27 14 3 0 0 0 8.7369 1 30503 30503 0 0 1 6635300 + 46813 21165 31403 32146 54781 54781 0.010524223969127888 PNRGAKVC 8 Unmodified _PNRGAKVC_ 0 0 0 REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000153253|Q9NY46-4|SCN3A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.726529 843.438506 -0.4755 -0.00020101 -2.0662 -0.00087345 -2.5417 -0.0010745 422.7258834807727 56.009 0.16193 56.009 55.953 56.115 0 -0.023803 -0.00062645 NaN 0 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1043500 + 46814 21165 31403 32146 0.010524223969127888 PNRGSAFT 8 Unmodified _PNRGSAFT_ 0 0 0 ENSG00000164532|ENST00000408931|TBX20 ENSG00000164532|ENST00000408931|TBX20 ENSG00000164532|ENST00000408931|TBX20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2176208496094 2 425.214309 848.414065 NaN NaN NaN NaN NaN NaN NaN 94.46 1 94.04 93.54 94.54 -0.42044 0 0 0 0.97444 1 51607 51607 0.69038 0 1 46815 7203 31404 32147 54782 54782 -0.01620514484955038 PNRLFFESAL 10 Unmodified _PNRLFFESAL_ 0 0 0 REV__ENSG00000121892|ENST00000303538|PDS5A REV__ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5478210449219 3 398.548629 1192.62406 -0.11043 -4.4012E-05 -2.1238 -0.00084644 -2.2342 -0.00089045 398.8823435526005 51.135 0.24488 51.082 50.942 51.187 -0.053871 24 11 3 0 0 0 0.69126 1 27685 27685 3.8763 0.80407 1 1904000 + 46816 19317 31405 32148 54783 54783 0.03545103397368621 PNRQLAAV 8 Unmodified _PNRQLAAV_ 0 0 0 nc|ENSG00000146054|Q9C029-1|TRIM7;ENSG00000146054|ENST00000274773|TRIM7 nc|ENSG00000146054|Q9C029-1|TRIM7 nc|ENSG00000146054|Q9C029-1|TRIM7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8834533691406 2 434.753601 867.49265 -0.28394 -0.00012345 -0.31595 -0.00013736 -0.5999 -0.00026081 434.7533432262053 34.259 0.25758 34.067 33.917 34.174 -0.19131 14 9 2 0 0 0 8.7369 1 17847 17847 8.5933 0 1 1380200 46817 5748 31406 32149 54784 54784 0.0536033782012737 PNRSIDTHH 9 Unmodified _PNRSIDTHH_ 0 0 0 REV__ENST00000332408.8_1_15:49118117-49118171:-|nuORF REV__ENST00000332408.8_1_15:49118117-49118171:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.2646484375 2 538.765229 1075.5159 0.94588 0.00050961 -0.89661 -0.00048306 0.04927 2.6545E-05 538.7650305107331 19.74 0.22985 17.084 16.89 17.12 -2.6564 25 15 2 0 0 0 0.18882 1 10423 10423 10.824 7.8287 1 3742500 + 46818 25609 31407 32150 54785 54785 -0.018832681332014545 PNSHSAQHVK 10 Unmodified _PNSHSAQHVK_ 0 0 0 ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C ENSG00000198173|ENST00000358047|FAM47C MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8575134277344 3 368.856345 1103.5472 0.76942 0.00028381 1.0401 0.00038366 1.8095 0.00066746 368.8568795613025 4.8811 0.12194 2.3992 2.3389 2.4608 -2.482 74 51 2 0 0 0 0.71276 1 2480 2480 0.62683 0 1 1882300 46819 10057 31408 32151 54786 54786 -0.0004269509911409841 PNSKQELQPY 10 Unmodified _PNSKQELQPY_ 0 0 0 nc|ENSG00000188779|P84550-2|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1;ENSG00000188779|ENST00000380035|SKOR1 nc|ENSG00000188779|P84550-2|SKOR1 nc|ENSG00000188779|P84550-2|SKOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.3036499023438 2 602.303852 1202.59315 0.37762 0.00022744 0.38906 0.00023433 0.76668 0.00046177 602.3041134155311 36.668 0.22786 36.668 36.547 36.775 0 25 10 3 0 0 0 0.65471 1 19475 19475 13.042 13.042 1 3291700 46820 9695 31409 32152 54787 54787 -4.094707514923357E-05 PNTESHQVVM 10 Unmodified _PNTESHQVVM_ 0 0 0 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2700805664062 2 571.268955 1140.52336 0.64748 0.00036989 -0.91621 -0.0005234 -0.26873 -0.00015352 571.2685668300705 63.899 0.39927 63.414 63.213 63.613 -0.48512 58 21 3 0 0 0 0.32072 1 34788 34788 26.268 0.86883 1 21689000 46821 9637 31410 32153 54788 54788 -0.04128296647786556 PNTESHQVVM 10 Unmodified _PNTESHQVVM_ 0 0 0 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.268955 1140.52336 0.57992 0.00033129 -1.0346 -0.00059101 -0.45464 -0.00025972 571.2679870558613 63.495 0.24333 63.474 63.297 63.541 -0.021614 0.030012 -0.00011915 NaN 26.268 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3045900 46822 9637 31410 32153 -0.04128296647786556 PNTQQKTSSF 10 Unmodified _PNTQQKTSSF_ 0 0 0 ENSG00000260220|ENST00000638797|CCDC187 ENSG00000260220|ENST00000638797|CCDC187 ENSG00000260220|ENST00000638797|CCDC187 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2772216796875 2 569.280377 1136.5462 NaN NaN NaN NaN NaN NaN NaN 73.642 1 73.642 73.142 74.142 0 0 0 0 0.97302 1 40998 40998 3.5965 0.60125 1 46823 10827 31411 32154 54789 54789 -0.01660954258682068 PNTRALLI 8 Unmodified _PNTRALLI_ 0 0 0 ENST00000332118.10_1_11:126133397-126133748:-|nuORF ENST00000332118.10_1_11:126133397-126133748:-|nuORF ENST00000332118.10_1_11:126133397-126133748:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.254150390625 2 449.279452 896.544351 0.60529 0.00027195 -0.78357 -0.00035204 -0.17828 -8.0097E-05 449.27909836747386 50.761 0.24569 50.348 50.192 50.438 -0.41351 14 11 2 0 0 0 8.7369 1 27346 27346 14.838 0 1 899240 46824 11868 31412 32155 54790 54790 0.09194081514044683 PNTRHQQEF 9 Unmodified _PNTRHQQEF_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000585296.1_1_17:16068277-16097907:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.5431518554688 3 386.187983 1155.54212 1.4934 0.00057674 1.3953 0.00053883 2.8887 0.0011156 386.52297255206275 19.825 0.21384 17.168 17.043 17.257 -2.6564 22 13 2 0 0 0 0.21572 1 10482 10482 2.2828 0 1 2310000 46825 5298 31413 32156 54791 54791 -0.029429989617028696 PNVDEPRAE 9 Unmodified _PNVDEPRAE_ 0 0 0 REV__ENSG00000107957|ENST00000369774|SH3PXD2A REV__ENSG00000107957|ENST00000369774|SH3PXD2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7474365234375 2 513.74617 1025.47779 0.41799 0.00021474 1.8425 0.00094657 2.2605 0.0011613 513.7472771058548 67.203 0.46636 67.203 66.971 67.437 0 44 19 3 0 0 0 0.34999 1 37526 37526 14.838 0.93222 1 2148400 + 46826 18587 31414 32157 54792 54792 -0.03393198838512035 PNVDGGFVGTF 11 Unmodified _PNVDGGFVGTF_ 0 0 0 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 REV__nc|ENSG00000168778|Q96GX1-2|TCTN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2672119140625 2 555.266739 1108.51892 0.86177 0.00047851 0.83395 0.00046306 1.6957 0.00094157 555.267123338093 66.924 0.37 66.942 66.753 67.123 0.018036 50 17 4 0 0 0 0.56638 1 36695 36695 13.042 2.2185 1 14693000 + 46827 22342 31415 32158 54793 54793 -0.030994377990509747 PNVECKSMRF 10 Oxidation (M) _PNVECKSM(Oxidation (M))RF_ PNVECKSM(1)RF PNVECKSM(52)RF 0 0 1 nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 nc|ENSG00000197181|Q8TC59-2|PIWIL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7860717773438 2 613.786458 1225.55836 -0.17969 -0.00011029 -0.99677 -0.00061181 -1.1765 -0.0007221 613.7850925807764 40.82 0.45277 40.82 40.701 41.154 0 82 41 2 0 0 0 0.077785 3 21931 21931;22040;22148 51.63 23.358 1 63109000 46828 9924 31416 32159 54794;54795;54796 54794 1600 -0.045393771114959236 PNVEELCRFP 10 Unmodified _PNVEELCRFP_ 0 0 0 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7967529296875 2 602.294973 1202.57539 0.13647 8.2196E-05 0.27383 0.00016492 0.4103 0.00024712 602.2953908709196 48.844 0.6225 43.447 43.039 43.661 -5.3961 92 37 3 0 0 0 0.44373 1 30306 30306 19.257 2.3147 1 97991000 46829 4021 31417 32160 54797 54797 -0.017791332340493682 PNVENELDLFG 11 Unmodified _PNVENELDLFG_ 0 0 0 REV__ENSG00000204020|ENST00000404459|LIPN REV__ENSG00000204020|ENST00000404459|LIPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8013916015625 2 623.801143 1245.58773 0.49814 0.00031074 2.6512 0.0016538 3.1493 0.0019645 623.8025130318841 56.968 0.4256 56.968 56.835 57.26 0 38 18 3 0 0 0 0.5229 1 31673 31673 15.248 5.8654 1 2371300 + 46830 24134 31418 32161 54798 54798 -0.025238182900011452 PNVESTSRSSN 11 Unmodified _PNVESTSRSSN_ 0 0 0 REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7780151367188 2 589.275823 1176.53709 -0.036038 -2.1236E-05 -2.387 -0.0014066 -2.423 -0.0014278 589.2738534723693 38.968 0.38923 38.682 38.398 38.787 -0.28687 41 17 3 0 0 0 0.63851 1 20446 20446 9.3831 2.0939 1 9451400 + 46831 28624 31419 32162 54799 54799 -0.04411347614995975 PNVIVPDI 8 Unmodified _PNVIVPDI_ 0 0 0 ENSG00000198515|ENST00000514170|CNGA1 ENSG00000198515|ENST00000514170|CNGA1 ENSG00000198515|ENST00000514170|CNGA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7528381347656 2 433.752736 865.490919 NaN NaN NaN NaN NaN NaN NaN 76.027 1 76.027 75.527 76.527 0 0 0 0 0.63034 1 42278 42278 32.117 5.7757 1 46832 10100 31420 32163 54800 54800 0.05279284011510299 PNVIVPDI 8 Unmodified _PNVIVPDI_ 0 0 0 ENSG00000198515|ENST00000514170|CNGA1 ENSG00000198515|ENST00000514170|CNGA1 ENSG00000198515|ENST00000514170|CNGA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7519836425781 2 433.752736 865.490919 0.03407 1.4778E-05 -1.5489 -0.00067184 -1.5148 -0.00065706 433.7523939020029 76.45 0.34229 75.97 75.835 76.177 -0.47945 29 22 2 0 0 0 0.24071 1 41859 41859 63.563 16.642 1 2631800 46833 10100 31420 32163 54801 54801 0.05279284011510299 PNVKETYDSSS 11 Unmodified _PNVKETYDSSS_ 0 0 0 nc|ENSG00000151725|Q71F23-2|CENPU;ENSG00000151725|ENST00000281453|CENPU nc|ENSG00000151725|Q71F23-2|CENPU nc|ENSG00000151725|Q71F23-2|CENPU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.1736755371094 3 409.522697 1225.54626 NaN NaN NaN NaN NaN NaN NaN 40.878 1 40.878 40.378 41.378 0 0 0 0 0.8958 1 22004 22004 7.4771 1.2852 1 46834 6142 31421 32164 54802 54802 -0.057489990493195364 PNVSLARVI 9 Unmodified _PNVSLARVI_ 0 0 0 nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 nc|ENSG00000146755|Q86XT4-2|TRIM50 MSMS AL20221201_MKP_PDAC_01 4 484.7974548339844 2 484.798009 967.581465 NaN NaN NaN NaN NaN NaN NaN 46.375 1 41.294 40.794 41.794 -5.0805 0 0 0 0.29524 1 28629 28629 25.399 2.2509 1 46835 5792 31422 32165 54803 54803 0.09637753059791976 PNVTGRRC 8 Unmodified _PNVTGRRC_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.4650268554688 1 902.462495 901.455219 0.27131 0.00024485 0.24363 0.00021986 0.51493 0.00046471 902.4631530446339 49.223 0.19325 49.223 49.083 49.277 0 13 8 2 0 0 0 0.61462 1 27061 27061 24.674 0 1 727880 46836 4239 31423 32166 54804 54804 0.0005492328286891279 PNWMTFAL 8 Oxidation (M) _PNWM(Oxidation (M))TFAL_ PNWM(1)TFAL PNWM(44)TFAL 0 0 1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2364807128906 2 498.236396 994.458238 -0.13862 -6.9064E-05 0.22788 0.00011354 0.089261 4.4473E-05 498.23639665966385 48.385 0.42497 48.385 48.193 48.618 0 52 20 3 0 0 0 0.40035 1 26592 26592 44.407 14.182 1 56611000 + 46837 29598 31424 32167 54805 54805 1867 -0.03921246382969912 PNWMTFAL 8 Oxidation (M) _PNWM(Oxidation (M))TFAL_ PNWM(1)TFAL PNWM(44)TFAL 0 0 1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 REV__nc|ENSG00000118855|Q9H3U5-3|MFSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2373657226562 2 498.236396 994.458238 0.63253 0.00031515 0.83332 0.00041519 1.4659 0.00073034 498.2366943024814 56.339 0.49684 50.362 50.118 50.615 -5.9769 53 28 3 0 0 0 0.40035 2 35910 35910;36037 44.407 10.305 1 45913000 + 46838 29598 31424 32167 54806;54807 54806 1867 -0.03921246382969912 PNYHDSDSGE 10 Unmodified _PNYHDSDSGE_ 0 0 0 ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7140502929688 2 560.712525 1119.4105 0.54269 0.00030429 1.1547 0.00064747 1.6974 0.00095177 560.7128531094614 49.194 0.40023 49.194 48.952 49.352 0 37 19 3 0 0 0 0.67033 1 27031 27031 6.2058 0.9089 1 4830000 46839 6805 31425 32168 54808 54808 -0.14443273840129223 PNYLDVATFL 10 Unmodified _PNYLDVATFL_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.799560546875 2 576.800414 1151.58628 0.5571 0.00032133 2.8333 0.0016342 3.3904 0.0019556 576.8003814199601 88.284 0.70878 87.78 87.382 88.091 -0.50423 87 32 4 0 0 0 0.61603 1 48228 48228 11.495 0 1 1533400 46840 2874 31426 32169 54809 54809 0.01654592411887279 PNYNTFMEF 9 Unmodified _PNYNTFMEF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29552193-29556516:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7509155273438 2 581.747324 1161.4801 0.19761 0.00011496 3.1512 0.0018332 3.3488 0.0019482 581.7497033186115 85.676 0.3567 85.676 85.411 85.768 0 31 14 3 0 0 0 0.58865 1 47509 47509 2.0598 0.21551 1 454150 46841 16480 31427 32170 54810 54810 -0.09418486425056471 PNYPLAMGPPL 11 Unmodified _PNYPLAMGPPL_ 0 0 0 REV__DVL2|p.P669L|1|0.21|ENSG00000004975|chr17:7226070-7226070|G/A|missense_variant REV__DVL2|p.P669L|1|0.21|ENSG00000004975|chr17:7226070-7226070|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3037719726562 2 585.30481 1168.59507 NaN NaN NaN NaN NaN NaN NaN 70.922 1 70.444 69.944 70.944 -0.47735 0 0 0 0.37978 1 38810 38810 29.082 2.1979 1 + 46842 16914 31428 32171 54811 54811 0.017512427767314875 PNYWDISEPE 10 Unmodified _PNYWDISEPE_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3079223632812 2 625.272218 1248.52988 0.58823 0.0003678 -0.90111 -0.00056344 -0.31288 -0.00019563 625.2716019025887 59.973 0.30098 59.973 59.857 60.158 0 21 13 2 0 0 0 0.22327 1 33394 33394 19.257 12.534 1 2199000 + 46843 21238 31429 32172 54812 54812 -0.08444080215394933 PPAGEYIALY 10 Unmodified _PPAGEYIALY_ 0 0 0 ENST00000304813.13_1_12:100550719-100551143:-|nuORF ENST00000304813.13_1_12:100550719-100551143:-|nuORF ENST00000304813.13_1_12:100550719-100551143:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2801513671875 2 547.281857 1092.54916 NaN NaN NaN NaN NaN NaN NaN 41.385 1 41.385 40.885 41.885 0 0 0 0 0.48706 1 22313 22313 26.884 3.7352 1 46844 11606 31430 32173 54813 54813 0.006589208661353041 PPAHRNFL 8 Unmodified _PPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2613830566406 2 476.261594 950.508634 0.21626 0.000103 -0.077647 -3.698E-05 0.13861 6.6015E-05 476.26147420201255 27.775 0.2671 27.804 27.662 27.929 0.029564 21 11 3 0 0 0 0.13235 1 14428 14428 90.836 38.567 1 8451800 46845 4309 31431 32174 54814 54814 0.03140044057022351 PPAKRLRLI 9 Unmodified _PPAKRLRLI_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;ENST00000441488.6_1_11:67925157-67938746:-|nuORF ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3604125976562 2 532.358568 1062.70258 1.5393 0.00081944 0.46543 0.00024777 2.0047 0.0010672 532.3588971604026 106.08 0.83551 99.909 99.676 100.51 -6.1757 342 135 3 0 0 0 0.61256 3 71017 71017;71119;71226 0.6015 0 1 10174000 46846 2699 31432 32175 54815;54816;54817 54815 0.17374000493123276 PPALQPPGWGF 11 Unmodified _PPALQPPGWGF_ 0 0 0 ENST00000445090.5_1_2:233194598-233200857:+|nuORF;ENST00000429283.2_1_2:233200464-233200857:+|nuORF ENST00000445090.5_1_2:233194598-233200857:+|nuORF ENST00000445090.5_1_2:233194598-233200857:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8034057617188 2 583.803291 1165.59203 -0.33257 -0.00019416 0.55154 0.00032199 0.21897 0.00012784 583.8033864778832 33.638 0.53062 33.478 33.297 33.828 -0.15918 28 21 2 0 0 0 0.71938 1 17559 17559 2.7352 0.67545 1 1211100 46847 13447 31433 32176 54818 54818 0.01585735714229486 PPAPHAASR 9 Unmodified _PPAPHAASR_ 0 0 0 REV__ENST00000222120.7_1_19:11448117-11450293:-|nuORF REV__ENST00000222120.7_1_19:11448117-11450293:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 451.720947265625 2 452.243401 902.472249 1.0262 0.0004641 -0.059146 -2.6748E-05 0.96707 0.00043735 452.24349062765043 19.075 0.28296 16.453 16.334 16.617 -2.6215 39 18 3 0 0 0 0.19298 1 10164 10164 8.5933 0 1 8683700 + 46848 24762 31434 32177 54819 54819 0.017111671603174727 PPAPLLYA 8 Unmodified _PPAPLLYA_ 0 0 0 REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF REV__ENST00000460477.1_1_7:45956706-45960430:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2463684082031 2 421.244547 840.47454 NaN NaN NaN NaN NaN NaN NaN 27.078 1 27.107 26.607 27.607 0.028664 0 0 0 0.9706 1 14065 14065 6.3541 0 1 + 46849 20846 31435 32178 54820 54820 0.04792202845419524 PPAPSRGLCWR 11 Unmodified _PPAPSRGLCWR_ 0 0 0 REV__ENST00000418255.1_1_1:40363463-40364335:+|nuORF REV__ENST00000418255.1_1_1:40363463-40364335:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 620.3236694335938 2 620.324399 1238.63425 NaN NaN NaN NaN NaN NaN NaN 22.137 1 19.402 18.902 19.902 -2.7348 0 0 0 0.88164 1 11895 11895 8.1555 0 1 + 46850 26796 31436 32179 54821 54821 0.02447387850929772 PPAQPESL 8 Unmodified _PPAQPESL_ 0 0 0 ENST00000550853.1_2_9:136891668-136894151:+|nuORF;ENST00000603928.2_2_9:136893890-136894151:+|nuORF ENST00000550853.1_2_9:136891668-136894151:+|nuORF ENST00000550853.1_2_9:136891668-136894151:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7192993164062 2 419.718893 837.423233 0.015382 6.4561E-06 0.87245 0.00036619 0.88784 0.00037264 419.71922962971837 18.195 0.26944 18.201 18.03 18.3 0.0060482 70 24 4 0 0 0 0.38465 1 9247 9247 46.021 3.9264 1 37071000 46851 15169 31437 32180 54822 54822 -0.0019816591928929483 PPAQPESL 8 Unmodified _PPAQPESL_ 0 0 0 ENST00000550853.1_2_9:136891668-136894151:+|nuORF;ENST00000603928.2_2_9:136893890-136894151:+|nuORF ENST00000550853.1_2_9:136891668-136894151:+|nuORF ENST00000550853.1_2_9:136891668-136894151:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 419.718893 837.423233 -0.55787 -0.00023415 1.8687 0.00078431 1.3108 0.00055016 419.7196808451258 18.03 0.11988 18.044 17.972 18.092 0.013865 -0.078744 0.00047406 NaN 46.021 55 25 3 NaN NaN NaN NaN 0 NaN NaN 0 4872300 46852 15169 31437 32180 -0.0019816591928929483 PPAQPLSE 8 Unmodified _PPAQPLSE_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA ENSG00000077312|ENST00000243563|SNRPA ENSG00000077312|ENST00000243563|SNRPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.7196655273438 2 419.718893 837.423233 1.2883 0.0005407 1.188 0.00049863 2.4763 0.0010393 419.7191780206386 19.324 0.41046 16.668 16.455 16.865 -2.6564 68 35 3 0 0 0 0.38465 1 10259 10259 46.021 0 1 86675000 46853 1213 31438 32181 54823 54823 -0.0019816591927792615 PPARGVQPP 9 Unmodified _PPARGVQPP_ 0 0 0 nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MSMS AL20221201_MKP_PDAC_01 4 459.7631225585938 2 459.761426 917.5083 NaN NaN NaN NaN NaN NaN NaN 23.294 1 20.516 20.016 21.016 -2.7784 0 0 0 0.3092 1 12600 12600 24.674 1.5255 1 46854 8144 31439 32182 54824 54824 0.046246243371683704 PPARRPPEPN 10 Unmodified _PPARRPPEPN_ 0 0 0 ENST00000497209.5_1_20:61296327-61299537:+|nuORF ENST00000497209.5_1_20:61296327-61299537:+|nuORF ENST00000497209.5_1_20:61296327-61299537:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 377.5420227050781 3 377.540357 1129.59924 NaN NaN NaN NaN NaN NaN NaN 38.749 1 34.298 33.798 34.798 -4.4509 0 0 0 0.8671 1 22907 22907 8.4443 3.0416 1 46855 14394 31440 32183 54825 54825 0.03962468314648504 PPASQLPE 8 Unmodified _PPASQLPE_ 0 0 0 REV__nc|ENSG00000163531|O94856|NFASC REV__nc|ENSG00000163531|O94856|NFASC MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.7200927734375 2 419.718893 837.423233 1.2883 0.0005407 1.188 0.00049863 2.4763 0.0010393 419.7191780206386 19.324 0.41046 16.668 16.455 16.865 -2.6564 68 35 3 0 0 0 0.28079 1 10150 10150 57.471 0 1 86675000 + 46856 21780 31441 32184 54826 54826 -0.0019816591927792615 PPAYIEEF 8 Unmodified _PPAYIEEF_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7662658691406 2 483.234376 964.454199 0.32265 0.00015592 -2.6882 -0.001299 -2.3655 -0.0011431 483.2331800665224 41.089 0.14547 40.785 40.718 40.863 -0.30304 8 6 2 0 0 0 8.7369 1 21718 21718 6.3541 0 1 1007700 46857 10075 31442 32185 54827 54827 -0.0294501260503921 PPCCPAVL 8 Unmodified _PPCCPAVL_ 0 0 0 REV__ENSG00000179044|ENST00000314586|EXOC3L1 REV__ENSG00000179044|ENST00000314586|EXOC3L1 MSMS AL20221201_MKP_PDAC_01 4 399.8676147460938 2 400.195685 798.376817 NaN NaN NaN NaN NaN NaN NaN 24.91 1 22.027 21.527 22.527 -2.8831 0 0 0 0.9706 1 13593 13593 6.3541 0 1 + 46858 23080 31443 32186 54828 54828 -0.030436453465767954 PPCHPFFPFLT 11 Unmodified _PPCHPFFPFLT_ 0 0 0 ENST00000373548.7_1_1:32798641-32798926:+|nuORF ENST00000373548.7_1_1:32798641-32798926:+|nuORF ENST00000373548.7_1_1:32798641-32798926:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822326660156 3 434.882843 1301.6267 NaN NaN NaN NaN NaN NaN NaN 63.796 1 63.796 63.296 64.296 0 0 0 0 0.94148 1 35581 35581 1.4551 0.12547 1 46859 12416 31444 32187 54829 54829 -0.012047644693438997 PPCWHASFY 9 Unmodified _PPCWHASFY_ 0 0 0 REV__nc|ENSG00000167693|Q6DKJ4-2|NXN REV__nc|ENSG00000167693|Q6DKJ4-2|NXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8256530761719 3 369.828739 1106.46439 0.14789 5.4694E-05 -1.1877 -0.00043924 -1.0398 -0.00038455 369.82864181316114 39.395 0.30646 39.395 39.224 39.53 0 32 14 3 0 0 0 0.57331 1 21182 21182 2.9952 0 1 3012700 + 46860 22242 31445 32188 54830 54830 -0.08458728151458672 PPDAAAFTV 9 Unmodified _PPDAAAFTV_ 0 0 0 ENST00000512186.1_1_5:80388771-80391986:+|nuORF;ENSG00000113319|ENST00000265080|RASGRF2 ENST00000512186.1_1_5:80388771-80391986:+|nuORF ENST00000512186.1_1_5:80388771-80391986:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.4468994140625 1 888.44616 887.438883 0.20525 0.00018235 -1.5394 -0.0013676 -1.3341 -0.0011853 888.4461289114937 59.31 0.39671 59.31 59.068 59.465 0 30 16 2 0 0 0 0.2143 2 33075 32966;33075 21.747 6.9084 1 5874300 46861 2958 31446 32189 54831;54832 54832 -0.009338794022482944 PPDAAAFTV 9 Unmodified _PPDAAAFTV_ 0 0 0 ENST00000512186.1_1_5:80388771-80391986:+|nuORF;ENSG00000113319|ENST00000265080|RASGRF2 ENST00000512186.1_1_5:80388771-80391986:+|nuORF ENST00000512186.1_1_5:80388771-80391986:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.7267456054688 2 444.726718 887.438883 NaN NaN NaN NaN NaN NaN NaN 43.597 1 43.597 43.097 44.097 0 0 0 0 0.50124 1 23689 23689 15.847 8.558 1 46862 2958 31446 32189 54833 54833 -0.009338794022482944 PPDAAAFTV 9 Unmodified _PPDAAAFTV_ 0 0 0 ENST00000512186.1_1_5:80388771-80391986:+|nuORF;ENSG00000113319|ENST00000265080|RASGRF2 ENST00000512186.1_1_5:80388771-80391986:+|nuORF ENST00000512186.1_1_5:80388771-80391986:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.7267456054688 2 444.726718 887.438883 1.1984 0.00053298 -0.318 -0.00014143 0.88044 0.00039156 444.7265500334803 50.719 0.49258 45.07 44.804 45.297 -5.649 60 30 3 0 0 0 0.095405 3 31735 31735;31863;31993 34.102 15.956 1 92506000 46863 2958 31446 32189 54834;54835;54836 54834 -0.009338794022482944 PPDLHHQGRL 10 Unmodified _PPDLHHQGRL_ 0 0 0 REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5448913574219 3 390.54399 1168.61014 NaN NaN NaN NaN NaN NaN NaN 27.678 1 27.707 27.207 28.207 0.028664 0 0 0 0.9731 1 14390 14390 3.5871 2.5156 1 + 46864 26610 31447 32190 54837 54837 0.03257870688935327 PPDLRCCLL 9 Unmodified _PPDLRCCLL_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2657470703125 2 515.26463 1028.51471 1.0274 0.0005294 -0.34911 -0.00017989 0.67833 0.00034952 515.2654684213672 42.667 0.52987 37.983 37.747 38.277 -4.6846 84 34 3 0 0 0 0.16226 1 25855 25855 26.884 2.6737 1 57446000 46865 3167 31448 32191 54838 54838 0.0015905818204373645 PPDVVSRFNPY 11 Unmodified _PPDVVSRFNPY_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8881225585938 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 16.34 1 16.346 15.846 16.846 0.0050564 0 0 0 0.93933 1 8190 8190 1.2148 0 1 + 46866 23320 31449 32192 54839 54839 0.007201845634881465 PPDYSMALSY 10 Unmodified _PPDYSMALSY_ 0 0 0 nc|ENSG00000164107|P61296-2|HAND2;ENSG00000164107|ENST00000359562|HAND2 nc|ENSG00000164107|P61296-2|HAND2 nc|ENSG00000164107|P61296-2|HAND2 MSMS AL20221201_MKP_PDAC_01 4 381.8403625488281 3 381.83908 1142.49541 NaN NaN NaN NaN NaN NaN NaN 15.178 1 12.65 12.15 13.15 -2.5273 0 0 0 0.97302 1 7765 7765 1.7423 0 1 46867 7140 31450 32193 54840 54840 -0.07013619627878143 PPEPVLEQWRY 11 Unmodified _PPEPVLEQWRY_ 0 0 0 ENSG00000186416|ENST00000688521|NKRF ENSG00000186416|ENST00000688521|NKRF ENSG00000186416|ENST00000688521|NKRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.362060546875 2 707.361702 1412.70885 -0.011771 -8.3261E-06 0.87397 0.00061821 0.8622 0.00060988 707.3620217819964 90.852 0.38657 90.852 90.672 91.059 0 50 17 5 0 0 0 0.69708 1 50290 50290 4.5289 2.0304 1 1314100 46868 9474 31451 32194 54841 54841 0.019004291433020626 PPEQEEKSQL 10 Unmodified _PPEQEEKSQL_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5318908691406 3 395.531304 1183.57208 0.34794 0.00013762 1.2259 0.00048488 1.5738 0.0006225 395.53184932729744 14.922 0.28605 12.395 12.298 12.584 -2.5273 139 47 4 0 0 0 0.67459 1 7683 7683 3.0723 0.33707 1 27047000 + 46869 19045 31452 32195 54842 54842 -0.012361048070488323 PPETSLLIF 9 Unmodified _PPETSLLIF_ 0 0 0 ENST00000252512.13_1_8:21863862-21863988:+|nuORF ENST00000252512.13_1_8:21863862-21863988:+|nuORF ENST00000252512.13_1_8:21863862-21863988:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7879943847656 2 508.786776 1015.559 0.36357 0.00018498 0.4677 0.00023796 0.83127 0.00042294 508.7869395889195 88.053 0.5228 88.053 87.788 88.311 0 73 27 3 0 0 0 0.5029 2 48655 48655;48854 7.2892 2.0586 1 3308500 46870 11148 31453 32196 54843;54844 54843 0.05184108871526405 PPEYMLELYNK 11 Unmodified _PPEYMLELYNK_ 0 0 0 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 ENSG00000163217|ENST00000295379|BMP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.8443603515625 2 698.844496 1395.67444 0.40686 0.00028433 -1.1347 -0.00079299 -0.72785 -0.00050866 698.8436025365428 67.501 0.44962 67.018 66.716 67.165 -0.48218 39 19 3 0 0 0 0.69316 1 36884 36884 4.897 1.9018 1 2277200 46871 6965 31454 32197 54845 54845 -0.007571550597958776 PPFEFAFKDE 10 Unmodified _PPFEFAFKDE_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;ENST00000496238.5_1_2:113300301-113305728:+|nuORF ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5292663574219 3 409.529123 1225.56554 0.81076 0.00033203 0.39934 0.00016354 1.2101 0.00049557 409.5294646496569 22.312 0.56145 19.577 19.274 19.835 -2.7348 86 30 4 0 0 0 0.71413 1 11842 11842 0.56317 0 1 23003000 46872 3863 31455 32198 54846 54846 -0.03821997967770585 PPFGGRHA 8 Unmodified _PPFGGRHA_ 0 0 0 REV__ENSG00000145388|ENST00000388822|METTL14 REV__ENSG00000145388|ENST00000388822|METTL14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.7196960449219 2 419.719562 837.42457 0.53729 0.00022551 -0.061474 -2.5802E-05 0.47581 0.00019971 419.7195261193905 22.907 1.483 20.128 19.574 21.057 -2.7784 246 104 3 0 0 0 0.5953 3 12291 12291;12401;12741 26.341 26.341 1 53978000 + 46873 20772 31456 32199 54847;54848;54849 54847 -0.0006448703986734472 PPFKCEEVF 9 Unmodified _PPFKCEEVF_ 0 0 0 REV__nc|ENSG00000182670|P53804-3|TTC3;REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7675170898438 2 548.26261 1094.51067 0.16428 9.0071E-05 3.0673 0.0016817 3.2316 0.0017718 548.767101439684 65.604 0.8295 59.428 59.053 59.883 -6.1757 103 47 3 0 0 0 0.39863 1 42567 42567 12.532 0 1 164490000 + 46874 23288;26585 31457 32200 54850 54850 -0.032807080400289124 PPFRPPPPS 9 Unmodified _PPFRPPPPS_ 0 0 0 ENST00000472174.6_1_1:44440608-44440716:+|nuORF ENST00000472174.6_1_1:44440608-44440716:+|nuORF ENST00000472174.6_1_1:44440608-44440716:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2724914550781 2 496.271627 990.528701 1.0231 0.00050773 0.094293 4.6795E-05 1.1174 0.00055453 496.27168300480565 80.213 0.6186 74.038 73.55 74.168 -6.1757 87 37 3 0 0 0 0.2143 1 52523 52523 21.747 21.747 1 56294000 46875 13899 31458 32201 54851 54851 0.03305794996992972 PPFTKVRSR 9 Unmodified _PPFTKVRSR_ 0 0 0 REV__ENST00000509238.1_1_5:139039185-139059991:+|nuORF REV__ENST00000509238.1_1_5:139039185-139059991:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2051086425781 3 363.217214 1086.62981 0.00079463 2.8862E-07 3.1706 0.0011516 3.1714 0.0011519 363.21872839799806 17.994 0.14446 18 17.935 18.08 0.0060482 13 9 2 0 0 0 0.21473 1 9107 9107 0.96228 0.75542 1 408230 + 46876 28127 31459 32202 54852 54852 0.08996246699712174 PPFTKVRSR 9 Unmodified _PPFTKVRSR_ 0 0 0 REV__ENST00000509238.1_1_5:139039185-139059991:+|nuORF REV__ENST00000509238.1_1_5:139039185-139059991:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 363.217214 1086.62981 1.799 0.00065341 10.192 0.0037018 11.991 0.0043552 363.2201008777721 20.324 0.07267 17.631 17.593 17.666 -2.693 -0.18428 0.0071484 NaN 0.96228 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 547130 + 46877 28127 31459 32202 0.08996246699712174 PPFWLTYIHS 10 Unmodified _PPFWLTYIHS_ 0 0 0 REV__ENST00000318240.7_1_18:47009961-47013433:-|nuORF REV__ENST00000318240.7_1_18:47009961-47013433:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.3138427734375 2 630.824224 1259.63389 0.16652 0.00010504 0.4731 0.00029844 0.63962 0.00040349 630.8249233993555 100.91 0.078079 100.91 100.86 100.94 0 4 2 2 0 0 0 0.24008 1 55689 55689 0.40072 0 1 346470 + 46878 25482 31460 32203 54853 54853 0.014462914027490115 PPGAVLSPL 9 Unmodified _PPGAVLSPL_ 0 0 0 REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 850.5056762695312 1 850.503281 849.496004 0.028752 2.4454E-05 0.74987 0.00063776 0.77862 0.00066222 850.5048086576811 101.08 0.13086 101.08 101.01 101.14 0 7 4 2 0 0 0 0.58466 1 55785 55785 2.3027 0 1 600320 + 46879 29106 31461 32204 54854 54854 0.06523587874153236 PPGAVLSPL 9 Unmodified _PPGAVLSPL_ 0 0 0 REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 850.503281 849.496004 0.028752 2.4454E-05 0.74987 0.00063776 0.77862 0.00066222 850.5048086576811 101.08 0.13086 101.08 101.01 101.14 0 0.01485 -9.7449E-05 NaN 2.3027 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 600320 + 46880 29106 31461 32204 0.06523587874153236 PPGAVLSPL 9 Unmodified _PPGAVLSPL_ 0 0 0 REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF REV__ENST00000585990.5_1_17:73910371-73916335:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 850.503281 849.496004 -0.20197 -0.00017177 0.87174 0.00074142 0.66977 0.00056964 850.5040092883644 101.18 0.29372 101.05 100.81 101.11 -0.13293 -0.01485 6.2028E-06 NaN 2.3027 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4790400 + 46881 29106 31461 32204 0.06523587874153236 PPGFTLFSCL 10 Unmodified _PPGFTLFSCL_ 0 0 0 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 ENSG00000167637|ENST00000618787|ZNF283 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.5572509765625 3 361.184411 1080.5314 1.179 0.00042584 1.704 0.00061544 2.883 0.0010413 361.18566493535235 27.096 0.3646 24.06 23.816 24.18 -3.0365 28 18 3 0 0 0 0.23821 1 14842 14842 0.77653 0 1 7172500 46882 7647 31462 32205 54855 54855 -0.005641176603376152 PPGGFGGL 8 Unmodified _PPGGFGGL_ 0 0 0 ENSG00000196990|ENST00000673969|FAM163B ENSG00000196990|ENST00000673969|FAM163B ENSG00000196990|ENST00000673969|FAM163B MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1835327148438 2 351.184489 700.354425 1.7235 0.00060526 -1.4155 -0.00049709 0.308 0.00010816 351.1838726560957 59.34 0.67908 53.231 52.801 53.48 -6.109 72 37 3 0 0 0 0.80624 1 38009 38009 2.8892 0 1 71030000 46883 9894 31463 32206 54856 54856 -0.007737854283391243 PPGGFGRG 8 Unmodified _PPGGFGRG_ 0 0 0 ENST00000249883.9_1_3:134075432-134075489:-|nuORF ENST00000249883.9_1_3:134075432-134075489:-|nuORF ENST00000249883.9_1_3:134075432-134075489:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.4422302246094 2 372.693013 743.371472 NaN NaN NaN NaN NaN NaN NaN 22.768 1 22.786 22.286 23.286 0.01749 0 0 0 0.97444 1 11705 11705 2.5775 1.7838 1 46884 11134 31464 32207 54857 54857 -0.010478648225216602 PPGLFDGL 8 Unmodified _PPGLFDGL_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2181396484375 2 408.218529 814.422505 NaN NaN NaN NaN NaN NaN NaN 20.713 1 20.713 20.213 21.213 0 0 0 0 0.97444 1 10436 10436 2.8892 0 1 46885 7440 31465 32208 54858 54858 0.007870394316569218 PPGPGPPLL 9 Unmodified _PPGPGPPLL_ 0 0 0 REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.4960327148438 2 422.749996 843.485439 -0.12614 -5.3324E-05 -0.6118 -0.00025864 -0.73793 -0.00031196 422.7501610284492 56.506 0.20327 56.506 56.383 56.586 0 13 8 2 0 0 0 0.53666 1 31386 31386 5.2307 0 1 384210 + 46886 26879 31466 32209 54859 54859 0.05743605219709025 PPGPGPPLL 9 Unmodified _PPGPGPPLL_ 0 0 0 REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF REV__ENST00000424383.4_1_7:1784183-1785002:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.749996 843.485439 -0.12614 -5.3324E-05 -0.6118 -0.00025864 -0.73793 -0.00031196 422.7501610284492 56.506 0.20327 56.506 56.383 56.586 0 0 0 NaN 5.2307 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 384210 + 46887 26879 31466 32209 0.05743605219709025 PPGPPRVF 8 Unmodified _PPGPPRVF_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7482299804688 2 433.747788 865.481023 0.30909 0.00013407 0.14127 6.1277E-05 0.45037 0.00019535 433.7477880920906 41.133 0.71161 41.132 40.711 41.422 -0.0017891 94 34 3 0 0 0 0.41521 1 21880 21880 42.968 0 1 18456000 46888 7520;14803 31467 32210 54860 54860 0.04290140796808828 PPGPPRVF 8 Unmodified _PPGPPRVF_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7485961914062 2 433.747788 865.481023 0.79552 0.00034506 0.33135 0.00014372 1.1269 0.00048878 433.74783723852727 45.597 0.80504 40.642 40.299 41.104 -4.9549 131 54 3 0 0 0 0.41521 1 28277 28277 42.968 0 1 82487000 46889 7520;14803 31467 32210 54861 54861 0.04290140796808828 PPGQRGPSL 9 Unmodified _PPGQRGPSL_ 0 0 0 REV__ENST00000229416.10_1_6:53409297-53409843:-|nuORF REV__ENST00000229416.10_1_6:53409297-53409843:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 454.7516174316406 2 454.751059 907.487565 NaN NaN NaN NaN NaN NaN NaN 24.589 1 21.706 21.206 22.206 -2.8831 0 0 0 0.083082 1 13398 13398 47.749 1.7277 1 + 46890 24808 31468 32211 54862 54862 0.03012033957531912 PPGQVAIVEKY 11 Unmodified _PPGQVAIVEKY_ 0 0 0 REV__nc|ENSG00000159082|O43426-4|SYNJ1 REV__nc|ENSG00000159082|O43426-4|SYNJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8925170898438 3 400.892284 1199.65502 0.92649 0.00037142 0.073467 2.9452E-05 0.99996 0.00040087 400.89249459974343 18.831 0.46797 16.209 15.971 16.439 -2.6215 101 34 4 0 0 0 0.6889 1 10046 10046 7.0371 0.84524 1 16979000 + 46891 21457 31469 32212 54863 54863 0.06318256711620052 PPGSLYRDF 9 Unmodified _PPGSLYRDF_ 0 0 0 ENST00000326764.9_2_19:54972187-54972391:+|nuORF ENST00000326764.9_2_19:54972187-54972391:+|nuORF ENST00000326764.9_2_19:54972187-54972391:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.1799926757812 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 78.087 1 71.912 71.412 72.412 -6.1757 0 0 0 0.83329 1 51101 51101 2.086 0.60411 1 46892 11821 31470 32213 54864 54864 -0.0097911659086094 PPGSPDWAG 9 Unmodified _PPGSPDWAG_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2674865722656 2 442.200867 882.387182 1.5451 0.00068326 1.3142 0.00058115 2.8593 0.0012644 442.20114878306345 33.868 0.56084 29.883 29.589 30.15 -3.9853 55 30 3 0 0 0 0.20528 1 19590 19590 2.0598 2.0598 1 10940000 46893 2709 31471 32214 54865 54865 -0.058716230961408655 PPHELKNTF 9 Unmodified _PPHELKNTF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7853393554688 2 541.785099 1081.55564 0.91959 0.00049822 0.5226 0.00028313 1.4422 0.00078136 541.7849768402219 50.759 0.30694 45.11 44.99 45.297 -5.649 29 18 2 0 0 0 0.06294 1 31962 31962 41.84 1.8823 1 31366000 46894 6854 31472 32215 54866 54866 0.018128588175159166 PPHELKNTF 9 Unmodified _PPHELKNTF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.785099 1081.55564 -0.17442 -9.4498E-05 -0.51171 -0.00027724 -0.68613 -0.00037173 541.7851508276818 45.471 0.10864 45.147 45.086 45.195 -0.32425 0.018414 -0.00074439 NaN 41.84 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 5177800 46895 6854 31472 32215 0.018128588175159166 PPHGAGAAP 9 Unmodified _PPHGAGAAP_ 0 0 0 REV__ENSG00000185668|ENST00000373012|POU3F1 REV__ENSG00000185668|ENST00000373012|POU3F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1974182128906 2 387.698295 773.382037 -0.44617 -0.00017298 -0.86639 -0.0003359 -1.3126 -0.00050887 387.6984206316103 19.711 0.14515 19.739 19.691 19.836 0.028355 15 9 2 0 0 0 0.22317 1 9952 9952 20.871 2.7362 1 475880 + 46896 23518 31473 32216 54867 54867 -0.013718821680981819 PPHGLLGI 8 Unmodified _PPHGLLGI_ 0 0 0 REV__nc|ENSG00000150995|Q14643-4|ITPR1 REV__nc|ENSG00000150995|Q14643-4|ITPR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2425842285156 2 402.242338 802.470124 1.3051 0.00052496 -0.61069 -0.00024564 0.6944 0.00027932 402.24193602432473 21.422 0.40544 18.688 18.666 19.072 -2.7348 52 28 2 0 0 0 0.80044 1 11580 11580 6.3541 0 1 3370200 + 46897 21045 31474 32217 54868 54868 0.060987384225086316 PPHHHHHHHA 10 Unmodified _PPHHHHHHHA_ 0 0 0 REV__ENSG00000204612|ENST00000376708|FOXB2 REV__ENSG00000204612|ENST00000376708|FOXB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2899169921875 2 622.290071 1242.56559 NaN NaN NaN NaN NaN NaN NaN 94.654 1 94.654 94.154 95.154 0 0 0 0 1.0061 1 52322 52322 0 0 1 + 46898 24188 31475 32218 54869 54869 -0.045990956138894035 PPHHQVGSSQF 11 Unmodified _PPHHQVGSSQF_ 0 0 0 REV__ENST00000488084.1_1_2:96861046-96873890:-|nuORF REV__ENST00000488084.1_1_2:96861046-96873890:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7957153320312 2 610.793986 1219.57342 0.1054 6.4379E-05 0.71531 0.00043691 0.82071 0.00050128 610.7942572288281 40.01 0.7205 40.01 39.575 40.295 0 99 35 4 0 0 0 0.6249 1 21319 21319 10.074 2.1638 1 4370100 + 46899 17729 31476 32219 54870 54870 -0.027584259276409284 PPHHSPCL 8 Unmodified _PPHHSPCL_ 0 0 0 REV__ENST00000373731.6_1_6:36457270-36457471:+|nuORF REV__ENST00000373731.6_1_6:36457270-36457471:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2132568359375 2 444.213255 886.411957 NaN NaN NaN NaN NaN NaN NaN 24.434 1 24.457 23.957 24.957 0.022333 0 0 0 0.97444 1 12607 12607 0.79363 0 1 + 46900 26159 31477 32220 54871 54871 -0.03579266494409694 PPHLSLPI 8 Unmodified _PPHLSLPI_ 0 0 0 ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF ENST00000480825.6_1_1:36933583-36933964:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2337036132812 2 437.263271 872.511988 0.9637 0.00042139 -0.42204 -0.00018454 0.54166 0.00023685 437.26296975198335 47.411 0.23877 47.372 47.216 47.455 -0.038643 14 10 2 0 0 0 8.7369 1 25522 25522 2.5775 0 1 623200 46901 14063 31478 32221 54872 54872 0.07063294111037521 PPHPPDPSL 9 Unmodified _PPHPPDPSL_ 0 0 0 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 nc|ENSG00000278224|Q2TBC4-2|PRICKLE4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7440795898438 2 478.745442 955.476331 NaN NaN NaN NaN NaN NaN NaN 20.608 1 20.608 20.108 21.108 0 0 0 0 0.33856 1 10379 10379 23.148 0 1 46902 16611 31479 32222 54873 54873 -0.003187881366329748 PPHPQAQPGR 10 Unmodified _PPHPQAQPGR_ 0 0 0 ENST00000372827.7_1_1:40224173-40224701:-|nuORF ENST00000372827.7_1_1:40224173-40224701:-|nuORF ENST00000372827.7_1_1:40224173-40224701:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2860717773438 2 542.785964 1083.55738 -0.10584 -5.745E-05 0.75938 0.00041218 0.65354 0.00035473 542.7861899868243 42.582 0.39538 42.275 42.218 42.613 -0.30682 24 17 2 0 0 0 0.21952 1 22629 22629 21.747 3.6117 1 6428700 46903 12394 31480 32223 54874 54874 0.018939126261329875 PPIHFLDKI 9 Unmodified _PPIHFLDKI_ 0 0 0 REV__nc|ENSG00000166181|Q9BZZ5-5|API5 REV__nc|ENSG00000166181|Q9BZZ5-5|API5 MSMS AL20221201_MKP_PDAC_01 4 360.547119140625 3 360.546449 1078.61752 NaN NaN NaN NaN NaN NaN NaN 68.107 1 61.932 61.432 62.432 -6.1757 0 0 0 0.53226 1 44427 44427 10.151 0.076642 1 + 46904 22091 31481 32224 54875 54875 0.08135210236650892 PPIHLRYLL 9 Unmodified _PPIHLRYLL_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5663452148438 3 374.565843 1120.6757 0.58213 0.00021805 1.0153 0.0003803 1.5975 0.00059835 374.5661272163831 65.192 0.67091 65.192 64.76 65.431 7.6294E-06 94 32 4 0 0 0 0.61256 1 35567 35567 0.26902 0 1 18675000 + 46905 24192 31482 32225 54876 54876 0.12018891881939453 PPIKGRWIL 9 Unmodified _PPIKGRWIL_ 0 0 0 REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF REV__ENST00000401957.6_1_7:22233026-22233254:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5419311523438 3 360.562321 1078.66514 0.056873 2.0506E-05 2.0124 0.00072559 2.0693 0.0007461 360.56283112498244 33.974 0.22153 34.003 33.881 34.103 0.028934 22 9 3 0 0 0 0.21404 1 17920 17920 5.2969 0.96765 1 3709500 + 46906 26611 31483 32226 54877 54877 0.1289490922749792 PPILLLLLLF 10 Unmodified _PPILLLLLLF_ 0 0 0 REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3945922851562 2 576.393754 1150.77295 NaN NaN NaN NaN NaN NaN NaN 86.597 1 86.094 85.594 86.594 -0.50318 0 0 0 1.0019 1 47381 47381 0.45834 0 1 + 46907 25785 31484 32227 54878 54878 0.20359861038241434 PPIPAPAAV 9 Unmodified _PPIPAPAAV_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.7503662109375 2 416.749996 831.485439 NaN NaN NaN NaN NaN NaN NaN 35.946 1 35.946 35.446 36.446 0 0 0 0 0.54015 1 19033 19033 14.582 6.6715 1 + 46908 18899 31485 32228 54879 54879 0.06295605219702338 PPKALEQPG 9 Unmodified _PPKALEQPG_ 0 0 0 REV__ENSG00000203933|ENST00000370540|CXorf66 REV__ENSG00000203933|ENST00000370540|CXorf66 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7610778808594 2 468.761092 935.507631 NaN NaN NaN NaN NaN NaN NaN 15.042 1 15.042 14.542 15.542 0 0 0 0 0.82396 1 7211 7211 4.756 0 1 + 46909 24128 31486 32229 54880 54880 0.03729784897461741 PPKATLWPAT 10 Unmodified _PPKATLWPAT_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.5572509765625 3 361.206203 1080.59678 1.2209 0.000441 1.6082 0.00058089 2.8291 0.0010219 361.20637393409544 26.774 0.28355 23.738 23.57 23.854 -3.0365 30 14 3 0 0 0 0.23634 1 14842 14842 0.62683 0 1 6485400 46910 9629 31487 32230 54881 54881 0.059706198569983826 PPKEETTPYI 10 Unmodified _PPKEETTPYI_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2047729492188 3 392.204528 1173.59175 1.3667 0.00053602 1.6945 0.00066461 3.0612 0.0012006 392.20654211314013 19.881 0.5159 17.225 16.955 17.471 -2.6564 74 31 4 0 0 0 0.65502 1 10477 10477 4.1895 0.31317 1 3338100 46911 6233 31488 32231 54882 54882 0.011902712037226593 PPKKGGGA 8 Unmodified _PPKKGGGA_ 0 0 0 REV__ENSG00000167074|ENST00000266304|TEF REV__ENSG00000167074|ENST00000266304|TEF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2117004394531 2 356.211038 710.407523 2.2596 0.00080489 0.23739 8.456E-05 2.497 0.00088945 356.2110511542066 105.29 0.1606 99.116 99.05 99.211 -6.1757 69 40 2 0 0 0 0.81107 1 70517 70517 0 0 1 224990000 + 46912 22176 31489 32232 54883 54883 0.04073592354336597 PPKKTGKI 8 Unmodified _PPKKTGKI_ 0 0 0 ENSG00000176208|ENST00000321990|ATAD5;nc|ENSG00000176208|Q96QE3-2|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.569580078125 1 868.561464 867.554188 1.4269 0.0012394 2.0899 0.0018152 3.5169 0.0030546 868.5630827232999 105.48 0.16916 99.3 99.247 99.416 -6.1757 31 22 2 0 0 0 0.80992 1 70674 70674 0.69038 0 1 7741800 46913 8575 31490 32233 54884 54884 0.11511269519428424 PPKMPYEPPL 10 Unmodified _PPKMPYEPPL_ 0 0 0 REV__ENSG00000198833|ENST00000435041|UBE2J1 REV__ENSG00000198833|ENST00000435041|UBE2J1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2068176269531 3 390.207216 1167.59982 0.012963 5.0584E-06 -1.1275 -0.00043997 -1.1146 -0.00043491 390.2068258555027 19.826 0.23154 19.834 19.734 19.966 0.0078506 21 11 3 0 0 0 0.60623 1 10086 10086 13.615 3.4643 1 2538700 + 46914 24071 31491 32234 54885 54885 0.022721269195017157 PPKPRRWRRP 10 Unmodified _PPKPRRWRRP_ 0 0 0 ENST00000287878.8_2_7:151292537-151372615:-|nuORF ENST00000287878.8_2_7:151292537-151372615:-|nuORF ENST00000287878.8_2_7:151292537-151372615:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.4052734375 2 673.407447 1344.80034 NaN NaN NaN NaN NaN NaN NaN 103.66 1 103.62 103.12 104.12 -0.047928 0 0 0 1.0024 1 57569 57569 0.40072 0.093686 1 46915 11448 31492 32235 54886 54886 0.14173202141796537 PPLAAKVGF 9 Unmodified _PPLAAKVGF_ 0 0 0 REV__ENSG00000179627|ENST00000342537|ZBTB42 REV__ENSG00000179627|ENST00000342537|ZBTB42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2691345214844 2 450.271096 898.527639 NaN NaN NaN NaN NaN NaN NaN 15.997 1 15.997 15.497 16.497 0 0 0 0 0.85798 1 7760 7760 0.52476 0.52476 1 + 46916 23107 31493 32236 54887 54887 0.07431580628087886 PPLAENDGTDF 11 Unmodified _PPLAENDGTDF_ 0 0 0 nc|ENSG00000172728|Q6P4F1-3|FUT10 nc|ENSG00000172728|Q6P4F1-3|FUT10 nc|ENSG00000172728|Q6P4F1-3|FUT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7474975585938 2 588.264393 1174.51423 -0.12661 -7.4481E-05 3.1973 0.0018808 3.0706 0.0018064 588.2664893600859 71.777 0.17384 71.777 71.645 71.819 0 10 7 2 0 0 0 0.68427 1 39967 39967 5.7319 0.97584 1 657750 46917 16385 31494 32237 54888 54888 -0.06604366732472045 PPLCRRRW 8 Unmodified _PPLCRRRW_ 0 0 0 REV__ENST00000246117.8_1_19:3186110-3192488:+|nuORF REV__ENST00000246117.8_1_19:3186110-3192488:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8703308105469 3 361.871272 1082.59199 -0.42672 -0.00015442 -0.36769 -0.00013306 -0.79441 -0.00028747 361.87106963307696 25.23 0.19633 25.23 25.087 25.283 0 17 9 2 0 0 0 0.80676 1 12926 12926 3.9444 3.4861 1 782130 + 46918 24863 31495 32238 54889 54889 0.053994572332612734 PPLFFLKWR 9 Unmodified _PPLFFLKWR_ 0 0 0 ENST00000369063.7_1_6:107077156-107077285:-|nuORF ENST00000369063.7_1_6:107077156-107077285:-|nuORF ENST00000369063.7_1_6:107077156-107077285:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.38525390625 2 602.355494 1202.69644 NaN NaN NaN NaN NaN NaN NaN 103.87 1 103.83 103.33 104.33 -0.048737 0 0 0 0.85737 1 57680 57680 0.6015 0.076735 1 46919 12293 31496 32239 54890 54890 0.10319482261570556 PPLHHRTAQ 9 Unmodified _PPLHHRTAQ_ 0 0 0 REV__ENSG00000204767|ENST00000377365|INSYN2B REV__ENSG00000204767|ENST00000377365|INSYN2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.287109375 2 528.788507 1055.56246 0.25645 0.00013561 0.13597 7.19E-05 0.39242 0.00020751 528.7890086416663 52.947 0.23111 52.495 52.4 52.631 -0.45173 19 11 2 0 0 0 0.17275 1 28607 28607 15.847 7.2539 1 2441200 + 46920 24202 31497 32240 54891 54891 0.03690216488735132 PPLHHRTAQ 9 Unmodified _PPLHHRTAQ_ 0 0 0 REV__ENSG00000204767|ENST00000377365|INSYN2B REV__ENSG00000204767|ENST00000377365|INSYN2B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 528.788507 1055.56246 1.4566 0.00077021 0.33498 0.00017713 1.7915 0.00094735 528.7898314166318 58.712 0.22734 52.638 52.492 52.719 -6.0745 0.071062 9.7417E-05 NaN 15.847 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6108400 + 46921 24202 31497 32240 0.03690216488735132 PPLHPLLRI 9 Unmodified _PPLHPLLRI_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 nc|ENSG00000112200|Q9Y4E5-4|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5625915527344 3 352.562321 1054.66514 0.50101 0.00017664 1.4423 0.00050851 1.9433 0.00068514 352.5627014563027 58.503 0.21356 58.442 58.333 58.546 -0.060719 16 10 2 0 0 0 0.60285 1 31874 31874 1.1933 0 1 1739100 46922 16123 31498 32241 54892 54892 0.13998909227507284 PPLHRVPG 8 Unmodified _PPLHRVPG_ 0 0 0 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7592468261719 2 436.758687 871.502821 0.33866 0.00014791 1.398 0.00061057 1.7366 0.00075848 436.7592061107899 68.635 0.33996 68.154 67.99 68.33 -0.48071 30 15 3 0 0 0 0.80975 1 37481 37481 0.79363 0 1 3613000 46923 16422 31499 32242 54893 54893 0.061929455453764604 PPLHRVPG 8 Unmodified _PPLHRVPG_ 0 0 0 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7590026855469 2 436.758687 871.502821 -0.084826 -3.7048E-05 1.3219 0.00057737 1.2371 0.00054032 436.7593173509433 69.885 0.29218 69.406 69.223 69.515 -0.47903 21 12 2 0 0 0 0.80975 1 38187 38187 0.79363 0 1 1585400 46924 16422 31499 32242 54894 54894 0.061929455453764604 PPLHRVPG 8 Unmodified _PPLHRVPG_ 0 0 0 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7593994140625 2 436.758687 871.502821 0.63826 0.00027877 1.0972 0.00047921 1.7355 0.00075798 436.75900633992086 68.114 0.49709 68.139 67.9 68.397 0.025146 59 24 4 0 0 0 0.80975 1 37412 37412 0.79363 0 1 42306000 46925 16422 31499 32242 54895 54895 0.061929455453764604 PPLHRVPG 8 Unmodified _PPLHRVPG_ 0 0 0 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.75927734375 2 436.758687 871.502821 0.6516 0.00028459 0.73053 0.00031907 1.3821 0.00060366 436.75886437553186 69.324 0.32735 69.355 69.187 69.514 0.030914 34 18 2 0 0 0 0.80975 1 38097 38097 0.79363 0 1 21572000 46926 16422 31499 32242 54896 54896 0.061929455453764604 PPLHRVPG 8 Unmodified _PPLHRVPG_ 0 0 0 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 nc|ENSG00000179832|Q8NDA8-3|MROH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.758687 871.502821 0.36682 0.00016021 2.2516 0.00098339 2.6184 0.0011436 436.75951737897947 68.304 0.4269 68.304 68.099 68.526 0 0.10522 0.00055847 NaN 0.79363 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3067500 46927 16422 31499 32242 0.061929455453764604 PPLKLKTA 8 Unmodified _PPLKLKTA_ 0 0 0 REV__ENSG00000153201|ENST00000283195|RANBP2 REV__ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.5673217773438 1 867.566215 866.558939 1.4061 0.0012199 0.021514 1.8665E-05 1.4277 0.0012386 867.5659831425533 105.28 0.37788 99.1 98.828 99.206 -6.1757 229 79 4 0 0 0 0.80992 1 70358 70358 0.69038 0 1 2217200000 + 46928 21158 31500 32243 54897 54897 0.12032153662187284 PPLKQEQVQVL 11 Unmodified _PPLKQEQVQVL_ 0 0 0 nc|ENSG00000182621|Q9NQ66-2|PLCB1;ENSG00000182621|ENST00000338037|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 nc|ENSG00000182621|Q9NQ66-2|PLCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9192810058594 3 426.918722 1277.73434 1.413 0.00060325 0.66525 0.00028401 2.0783 0.00088726 426.9190477096186 50.279 0.40656 50.231 50.027 50.433 -0.048828 70 19 5 0 0 0 0.44612 1 27149 27149 19.144 4.306 1 9364000 46929 9073 31501 32244 54898 54898 0.10657903665764934 PPLKSQSI 8 Unmodified _PPLKSQSI_ 0 0 0 ENST00000579129.5_1_18:74778339-74844775:-|nuORF;ENST00000487778.5_1_18:74809335-74844688:-|nuORF ENST00000579129.5_1_18:74778339-74844775:-|nuORF ENST00000579129.5_1_18:74778339-74844775:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2592468261719 2 435.258185 868.501818 0.85432 0.00037185 1.2088 0.00052613 2.0631 0.00089798 435.2586678397054 28.72 0.86804 25.572 25.022 25.89 -3.1482 105 45 3 0 0 0 0.44629 2 16032 15909;16032 39.957 3.9131 1 66045000 46930 14210 31502 32245 54899;54900 54900 0.06230686385822537 PPLLPTDPC 9 Unmodified _PPLLPTDPC_ 0 0 0 REV__nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 REV__nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7444763183594 2 476.744053 951.473554 0.91889 0.00043808 -0.29805 -0.00014209 0.62084 0.00029598 476.7439491984776 49.77 0.93603 49.378 49.077 50.013 -0.3923 91 46 3 0 0 0 0.28047 1 26785 26785 18.135 4.6271 1 3996100 + 46931 29631 31503 32246 54901 54901 -0.0041237958580495615 PPLLVLPLLL 10 Unmodified _PPLLVLPLLL_ 0 0 0 REV__ENSG00000188038|ENST00000339176|NRN1L REV__ENSG00000188038|ENST00000339176|NRN1L MSMS AL20221201_MKP_PDAC_01 4 363.1607971191406 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 15.987 1 13.43 12.93 13.93 -2.557 0 0 0 1.0047 1 8250 8250 0.15932 0 1 + 46932 23684 31504 32247 54902 54902 0.20175288004134018 PPLPATPASGS 11 Unmodified _PPLPATPASGS_ 0 0 0 ENST00000561122.1_1_15:57179259-57179643:-|nuORF ENST00000561122.1_1_15:57179259-57179643:-|nuORF ENST00000561122.1_1_15:57179259-57179643:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.2858276367188 2 497.763832 993.513111 0.72791 0.00036233 0.96129 0.0004785 1.6892 0.00084082 497.7643635772816 43.734 0.46261 38.969 38.709 39.171 -4.7648 40 28 2 0 0 0 0.30139 1 26514 26514 5.7319 1.7875 1 9193700 46933 15316 31505 32248 54903 54903 0.01609463689283075 PPLPKLLG 8 Unmodified _PPLPKLLG_ 0 0 0 REV__ENST00000497825.5_1_9:130213401-130213527:-|nuORF REV__ENST00000497825.5_1_9:130213401-130213527:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.7760620117188 2 417.776014 833.537475 NaN NaN NaN NaN NaN NaN NaN 87.683 1 87.179 86.679 87.679 -0.50423 0 0 0 0.97444 1 47962 47962 0 0 1 + 46934 27981 31506 32249 54904 54904 0.11404768633485673 PPLPPPHR 8 Unmodified _PPLPPPHR_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7667541503906 2 455.766512 909.518471 0.37185 0.00016948 1.2414 0.00056577 1.6132 0.00073524 455.76688269643415 72.728 0.44084 72.77 72.527 72.968 0.041733 52 20 4 0 0 0 0.80975 1 40103 40103 0.79363 0 1 13577000 46935 10288 31507 32250 54905 54905 0.06009232062422143 PPLPPPPF 8 Unmodified _PPLPPPPF_ 0 0 0 ENST00000360299.9_1_12:56367870-56380734:+|nuORF;ENST00000409161.5_1_11:70508092-70508251:-|nuORF REV__ENSG00000135631|ENST00000486777|RAB11FIP5 REV__ENSG00000135631|ENST00000486777|RAB11FIP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.24755859375 2 431.247089 860.479626 1.6795 0.00072428 0.83111 0.00035841 2.5106 0.0010827 431.24728201220506 105.29 0.13551 99.118 99.059 99.194 -6.1757 53 33 2 0 0 0 0.80624 1 70525 70525 2.8892 0 1 90754000 46936 20083 31508 32251 54906 54906 0.04380506708037046 PPLPREATII 10 Unmodified _PPLPREATII_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;ENST00000332954.8_1_11:16810636-16813269:-|nuORF;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5578918457031 3 369.557125 1105.64954 1.0908 0.0004031 0.093979 3.473E-05 1.1847 0.00043783 369.5571597954867 46.32 0.38414 41.239 41.009 41.393 -5.0805 67 26 3 0 0 0 0.13391 1 28477 28477 35.612 7.1177 1 85151000 46937 7520;14803 31509 32252 54907 54907 0.10094577919812764 PPLRDYRR 8 Unmodified _PPLRDYRR_ 0 0 0 REV__nc|ENSG00000154027|Q9Y6K8-3|AK5 REV__nc|ENSG00000154027|Q9Y6K8-3|AK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2055053710938 3 358.205197 1071.59376 0.86049 0.00030823 1.4402 0.0005159 2.3007 0.00082413 358.20549348837676 41.401 0.51517 36.793 36.612 37.127 -4.6079 44 33 2 0 0 0 0.74687 1 24811 24811 13.042 6.3193 1 21940000 + 46938 21205 31510 32253 54908 54908 0.06082789522838539 PPLRPLSSTGY 11 Unmodified _PPLRPLSSTGY_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;ENST00000522196.1_1_8:95500936-95502329:-|nuORF ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MSMS AL20221201_MKP_PDAC_01 4 594.324462890625 2 594.324588 1186.63462 NaN NaN NaN NaN NaN NaN NaN 105.13 1 98.958 98.458 99.458 -6.1757 0 0 0 0.94032 1 70416 70416 2.2828 0.80087 1 46939 7270 31511 32254 54909 54909 0.048770860518061454 PPLRWCLF 8 Unmodified _PPLRWCLF_ 0 0 0 REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF REV__ENST00000474430.5_1_1:155151285-155154671:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.555297851562 1 1031.54952 1030.54224 -0.28332 -0.00029226 0.68091 0.00070239 0.39759 0.00041013 1032.5560525667815 72.567 0.47878 72.567 72.178 72.657 0 27 19 2 0 0 0 0.80992 1 40359 40359 0.69038 0 1 710150 + 46940 21765 31512 32255 54910 54910 0.028193295045639388 PPLVCDLAEL 10 Unmodified _PPLVCDLAEL_ 0 0 0 REV__ENST00000419025.1_1_3:183744750-183744864:-|nuORF REV__ENST00000419025.1_1_3:183744750-183744864:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2842407226562 2 535.283543 1068.55253 0.53469 0.00028621 0.77062 0.0004125 1.3053 0.00069871 535.2841434344895 53.312 0.42529 53.312 53.061 53.486 0 61 18 5 0 0 0 0.16524 1 29592 29592 37.974 3.5723 1 38717000 + 46941 26815 31513 32256 54911 54911 0.020998476484919593 PPLVCDLAEL 10 Unmodified _PPLVCDLAEL_ 0 0 0 REV__ENST00000419025.1_1_3:183744750-183744864:-|nuORF REV__ENST00000419025.1_1_3:183744750-183744864:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.283543 1068.55253 0.53469 0.00028621 0.77062 0.0004125 1.3053 0.00069871 535.2841434344895 53.312 0.42529 53.312 53.061 53.486 0 -0.0054148 -3.8177E-05 NaN 37.974 61 18 5 NaN NaN NaN NaN 0 NaN NaN 0 38717000 + 46942 26815 31513 32256 0.020998476484919593 PPLVLTLG 8 Unmodified _PPLVLTLG_ 0 0 0 REV__ENST00000574946.5_1_17:6024012-6024231:+|nuORF REV__ENST00000574946.5_1_17:6024012-6024231:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8975219726562 2 405.260197 808.50584 0.059913 2.428E-05 1.2 0.00048633 1.26 0.00051061 405.26055439977245 61.594 0.29647 61.561 61.374 61.671 -0.032787 24 14 3 0 0 0 8.7369 1 33632 33632 2.3027 0 1 2716000 + 46943 29011 31514 32257 54912 54912 0.09392775879530291 PPMPPMVLNF 10 Unmodified _PPMPPMVLNF_ 0 0 0 REV__nc|ENSG00000005007|Q92900|UPF1 REV__nc|ENSG00000005007|Q92900|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5270690917969 3 381.529413 1141.56641 1.4826 0.00056565 1.73 0.00066004 3.2126 0.0012257 381.5301064581866 42.566 0.39594 37.881 37.693 38.089 -4.6846 35 26 2 0 0 0 0.60623 1 25869 25869 6.1918 0 1 24998000 + 46944 16959 31515 32258 54913 54913 0.0012880187593964365 PPNDHDYHYL 10 Unmodified _PPNDHDYHYL_ 0 0 0 REV__nc|ENSG00000156983|P55201-4|BRPF1 REV__nc|ENSG00000156983|P55201-4|BRPF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.1880798339844 3 424.18776 1269.54145 NaN NaN NaN NaN NaN NaN NaN 40.799 1 40.799 40.299 41.299 0 0 0 0 0.92825 1 21955 21955 3.5871 1.6807 1 + 46945 21357 31516 32259 54914 54914 -0.08253838401424218 PPNKKKNKK 9 Unmodified _PPNKKKNKK_ 0 0 0 REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2330322265625 3 361.232864 1080.67676 -0.39271 -0.00014186 0.6872 0.00024824 0.29449 0.00010638 361.23311240555347 24.735 0.19966 24.735 24.624 24.823 0 22 11 2 0 0 0 0.60285 1 12653 12653 1.1933 0.12188 1 851080 + 46946 26288 31517 32260 54915 54915 0.139651062508392 PPNLPFKFYF 10 Unmodified _PPNLPFKFYF_ 0 0 0 ENST00000396061.5_1_15:59942911-59944418:-|nuORF ENST00000396061.5_1_15:59942911-59944418:-|nuORF ENST00000396061.5_1_15:59942911-59944418:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8931884765625 3 423.893737 1268.65938 NaN NaN NaN NaN NaN NaN NaN 15.996 1 15.982 15.482 16.482 -0.014067 0 0 0 1.0024 1 7876 7876 0.13989 0 1 46947 12783 31518 32261 54916 54916 0.03579765925178435 PPPAEPWRPSW 11 Unmodified _PPPAEPWRPSW_ 0 0 0 REV__ENSG00000090470|ENST00000204549|PDCD7 REV__ENSG00000090470|ENST00000204549|PDCD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3309936523438 2 660.330205 1318.64586 0.61597 0.00040674 0.61821 0.00040822 1.2342 0.00081497 660.3307061444996 74.423 0.44756 74.469 74.235 74.682 0.045959 58 19 4 0 0 0 0.58219 1 41061 41061 12.241 1.4411 1 18617000 + 46948 17859 31519 32262 54917 54917 -0.0007209185407646146 PPPAEPWRPSW 11 Unmodified _PPPAEPWRPSW_ 0 0 0 REV__ENSG00000090470|ENST00000204549|PDCD7 REV__ENSG00000090470|ENST00000204549|PDCD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8326416015625 2 660.330205 1318.64586 0.73406 0.00048472 0.5439 0.00035916 1.278 0.00084388 660.3303773654349 95.02 0.34698 88.844 88.693 89.04 -6.1757 57 18 4 0 0 0 0.15156 1 63016 63016 36.506 0.37917 1 83461000 + 46949 17859 31519 32262 54918 54918 -0.0007209185407646146 PPPAQNQNQF 10 Unmodified _PPPAQNQNQF_ 0 0 0 ENST00000446634.1_1_7:143080130-143081191:+|nuORF ENST00000446634.1_1_7:143080130-143081191:+|nuORF ENST00000446634.1_1_7:143080130-143081191:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7774047851562 2 570.775262 1139.53597 1.1966 0.000683 1.2641 0.00072153 2.4607 0.0014045 570.7766639984558 36.941 0.1829 32.658 32.613 32.796 -4.2835 17 10 2 0 0 0 0.16524 1 21637 21637 37.974 3.5723 1 12584000 46950 13468 31520 32263 54919 54919 -0.02821517193251566 PPPCCCYC 8 Unmodified _PPPCCCYC_ 0 0 0 REV__ENST00000529601.5_1_11:64879440-64881038:+|nuORF REV__ENST00000529601.5_1_11:64879440-64881038:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.1416625976562 2 443.141738 884.268923 NaN NaN NaN NaN NaN NaN NaN 11.787 1 9.3049 8.8049 9.8049 -2.482 0 0 0 0.97444 1 5930 5930 0 0 1 + 46951 28424 31521 32264 54920 54920 -0.17784101263839602 PPPCPSCP 8 Unmodified _PPPCPSCP_ 0 0 0 REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.1696472167969 2 399.169667 796.324781 0.47421 0.00018929 -0.5326 -0.0002126 -0.058397 -2.331E-05 399.1693512837495 43.011 0.21269 43.011 42.853 43.065 0 13 10 2 0 0 0 0.50586 1 23355 23355 34.187 7.8461 1 3687300 + 46952 27101 31522 32265 54921 54921 -0.08152808760348762 PPPDLARLY 9 Unmodified _PPPDLARLY_ 0 0 0 REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.7571411132812 2 521.290017 1040.56548 0.51451 0.00026821 -1.5915 -0.00082962 -1.077 -0.00056141 521.2894222652087 65.312 1.0169 59.137 58.77 59.787 -6.1757 105 58 3 0 0 0 0.17666 1 42856 42856 13.508 0.97634 1 28515000 + 46953 24829 31523 32266 54922 54922 0.0468204682290434 PPPFRGLS 8 Unmodified _PPPFRGLS_ 0 0 0 chr13:114000932-114004804|132|16.7|0.11|7.21|-|1|TE_info:L1PB4,L1PB4_dup6100,L1,LINE,donor,+,114004804,114005208|RASA3,None|3 chr13:114000932-114004804|132|16.7|0.11|7.21|-|1|TE_info:L1PB4,L1PB4_dup6100,L1,LINE,donor,+,114004804,114005208|RASA3,None|3 chr13:114000932-114004804|132|16.7|0.11|7.21|-|1|TE_info:L1PB4,L1PB4_dup6100,L1,LINE,donor,+,114004804,114005208|RASA3,None|3 MSMS AL20221201_MKP_PDAC_01 4 435.7463684082031 2 435.745245 869.475937 NaN NaN NaN NaN NaN NaN NaN 32.246 1 28.39 27.89 28.89 -3.8562 0 0 0 0.77249 1 18352 18352 24.674 0 1 46954 82 31524 32267 54923 54923 0.0359783693419331 PPPGAHVF 8 Unmodified _PPPGAHVF_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000418472.6_1_18:46856042-46938282:-|nuORF nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MSMS AL20221201_MKP_PDAC_01 4 411.2196350097656 2 411.218863 820.423173 NaN NaN NaN NaN NaN NaN NaN 47.105 1 42.024 41.524 42.524 -5.0805 0 0 0 0.48318 1 29201 29201 41.817 17.607 1 46955 5360 31525 32268 54924 54924 0.005778788713769245 PPPGLALLLL 10 Unmodified _PPPGLALLLL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 CON__ENSEMBL:ENSBTAP00000023055 MSMS AL20221201_MKP_PDAC_01 4 502.3308410644531 2 502.331153 1002.64775 NaN NaN NaN NaN NaN NaN NaN 99.341 1 93.166 92.666 93.666 -6.1757 0 0 0 0.24128 1 66126 66126 40.449 0.49126 1 + 46956 143 31526 32269 54925 54925 0.1465356890186058 PPPGPCPA 8 Unmodified _PPPGPCPA_ 0 0 0 REV__ENSG00000112787|ENST00000680143|FBRSL1 REV__ENSG00000112787|ENST00000680143|FBRSL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.17822265625 2 368.178349 734.342146 1.0484 0.000386 0.33431 0.00012308 1.3827 0.00050909 368.17851773841716 55.951 0.96529 50.029 49.706 50.671 -5.9211 67 56 2 0 0 0 0.61999 3 35514 35514;35776;35966 24.21 0 1 40733000 + 46957 18837 31527 32270 54926;54927;54928 54926 -0.03565145163031502 PPPGYGFG 8 Unmodified _PPPGYGFG_ 0 0 0 REV__ENST00000589874.2_1_19:1432091-1433000:+|nuORF REV__ENST00000589874.2_1_19:1432091-1433000:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1902770996094 2 396.189771 790.36499 -0.55736 -0.00022082 1.9536 0.00077399 1.3962 0.00055317 396.190372725581 78.089 0.30523 77.607 77.562 77.867 -0.4826 22 13 2 0 0 0 0.81107 1 42822 42822 0 0 1 1937000 + 46958 29142 31528 32271 54929 54929 -0.038578027738935816 PPPIEDENI 9 Unmodified _PPPIEDENI_ 0 0 0 REV__ENSG00000154222|ENST00000284376|CC2D1B REV__ENSG00000154222|ENST00000284376|CC2D1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.253173828125 2 512.253297 1022.49204 0.02995 1.5342E-05 -0.034816 -1.7835E-05 -0.0048659 -2.4926E-06 512.2533958366838 43.51 0.74261 43.199 42.82 43.563 -0.31039 94 35 4 0 0 0 0.39863 1 23204 23204 12.532 0.89125 1 43731000 + 46959 21214 31529 32272 54930 54930 -0.018305464102354563 PPPILENPTP 10 Unmodified _PPPILENPTP_ 0 0 0 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.8655395507812 3 358.865847 1073.57571 -0.38183 -0.00013703 -0.40996 -0.00014712 -0.79179 -0.00028415 358.8655899163349 24.579 0.26974 24.579 24.448 24.718 0 53 15 4 0 0 0 0.66569 1 12536 12536 3.5871 0.5148 1 23036000 46960 5504 31530 32273 54931 54931 0.04186609757448423 PPPINSPELL 10 Unmodified _PPPINSPELL_ 0 0 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3001708984375 2 538.802957 1075.59136 0.75338 0.00040592 0.21837 0.00011766 0.97175 0.00052358 538.8040110256245 47.677 0.31725 47.677 47.427 47.745 0 34 14 3 0 0 0 0.48834 1 26019 26019 16.942 2.104 1 14750000 46961 657 31531 32274 54932 54932 0.05658896274530889 PPPISAAPP 9 Unmodified _PPPISAAPP_ 0 0 0 REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7391357421875 2 423.739628 845.464704 -0.39885 -0.00016901 0.50053 0.00021209 0.10168 4.3084E-05 423.7398434778767 24.582 0.33268 24.582 24.469 24.802 0 30 18 2 0 0 0 0.0094915 2 12551 12532;12551 81.864 21.474 1 3067400 + 46962 22196 31532 32275 54933;54934 54934 0.0357901484002241 PPPISAAPP 9 Unmodified _PPPISAAPP_ 0 0 0 REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.8613586425781 2 423.739628 845.464704 -0.39885 -0.00016901 0.50053 0.00021209 0.10168 4.3084E-05 423.7398434778767 24.582 0.33268 24.582 24.469 24.802 0 30 18 2 0 0 0 0.1474 1 12532 12532 28.487 5.3384 1 3067400 + 46963 22196 31532 32275 54935 54935 0.0357901484002241 PPPISAAPP 9 Unmodified _PPPISAAPP_ 0 0 0 REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF REV__ENST00000534709.1_1_11:117152603-117155864:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7396545410156 2 423.739628 845.464704 0.65861 0.00027908 -1.1726 -0.00049688 -0.51399 -0.0002178 423.7395496789377 27.917 0.43434 24.768 24.568 25.003 -3.1482 73 23 4 0 0 0 0.013472 1 15474 15474 70.716 0 1 32710000 + 46964 22196 31532 32275 54936 54936 0.0357901484002241 PPPLHHGCWNG 11 Unmodified _PPPLHHGCWNG_ 0 0 0 REV__nc|ENSG00000157211|Q5VXM1-1|CDCP2 REV__nc|ENSG00000157211|Q5VXM1-1|CDCP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5215454101562 3 405.522309 1213.5451 NaN NaN NaN NaN NaN NaN NaN 29.186 1 29.186 28.686 29.686 0 0 0 0 0.94301 1 15109 15109 0.094841 0 1 + 46965 21371 31533 32276 54937 54937 -0.0531344710857411 PPPLSLMLLY 10 Unmodified _PPPLSLMLLY_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|142|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|142|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 381.8885498046875 3 381.887594 1142.64095 NaN NaN NaN NaN NaN NaN NaN 72.611 1 66.435 65.935 66.935 -6.1757 0 0 0 0.71851 1 47501 47501 9.544 0.79857 1 + 46966 16801 31534 32277 54938 54938 0.07533887958970809 PPPLSPQQP 9 Unmodified _PPPLSPQQP_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7627868652344 2 480.761092 959.507631 -0.20075 -9.6514E-05 0.75945 0.00036512 0.5587 0.0002686 480.7610797476855 24.58 0.27118 24.58 24.426 24.697 0 41 15 3 0 0 0 0.010818 2 12528 12528;12628 78.149 23.376 1 42162000 + 46967 19438 31535 32278 54939;54940 54939 0.026257848974637454 PPPLSPQQP 9 Unmodified _PPPLSPQQP_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.760498046875 2 480.761092 959.507631 0.28654 0.00013776 -0.84893 -0.00040813 -0.56239 -0.00027038 480.7607475262893 24.858 0.1862 24.856 24.758 24.944 -0.0016766 11 7 2 0 0 0 0.010818 1 12716 12716 78.149 23.376 1 6731700 + 46968 19438 31535 32278 54941 54941 0.026257848974637454 PPPLSPQQP 9 Unmodified _PPPLSPQQP_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7615966796875 2 480.761092 959.507631 0.52367 0.00025176 1.5644 0.00075212 2.0881 0.0010039 480.76158516748836 27.904 0.61577 24.756 24.526 25.142 -3.1482 81 32 4 0 0 0 0.008678 2 15403 15403;15522 88.904 24.667 1 387600000 + 46969 19438 31535 32278 54942;54943 54942 0.026257848974637454 PPPLSPQQP 9 Unmodified _PPPLSPQQP_ 0 0 0 REV__ENSG00000124313|ENST00000642864|IQSEC2 REV__ENSG00000124313|ENST00000642864|IQSEC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.761092 959.507631 0.28654 0.00013776 -0.84893 -0.00040813 -0.56239 -0.00027038 480.7607475262893 24.858 0.1862 24.856 24.758 24.944 -0.0016766 0.17197 -0.0013193 NaN 88.904 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 6731700 + 46970 19438 31535 32278 0.026257848974637454 PPPLTDRPH 9 Unmodified _PPPLTDRPH_ 0 0 0 REV__ENST00000323534.4_2_3:152880144-152880483:+|nuORF REV__ENST00000323534.4_2_3:152880144-152880483:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2779541015625 2 515.277441 1028.54033 1.1369 0.0005858 0.71411 0.00036796 1.851 0.00095376 515.2781717030052 21.221 0.19195 18.528 18.414 18.606 -2.693 14 10 2 0 0 0 0.06187 1 11319 11319 42.095 9.9776 1 3480600 + 46971 25528 31536 32279 54944 54944 0.027199920203202055 PPPLWRLVVH 10 Unmodified _PPPLWRLVVH_ 0 0 0 REV__nc|ENSG00000187266|P19235-2|EPOR REV__nc|ENSG00000187266|P19235-2|EPOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.246337890625 3 405.244992 1212.71315 NaN NaN NaN NaN NaN NaN NaN 68.268 1 68.268 67.768 68.768 0 0 0 0 1.0019 1 38058 38058 0.15932 0.01943 1 + 46972 23631 31537 32280 54945 54945 0.1152998314753404 PPPLWRLVVH 10 Unmodified _PPPLWRLVVH_ 0 0 0 REV__nc|ENSG00000187266|P19235-2|EPOR REV__nc|ENSG00000187266|P19235-2|EPOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2463684082031 3 405.244992 1212.71315 NaN NaN NaN NaN NaN NaN NaN 69.662 1 69.183 68.683 69.683 -0.47903 0 0 0 1.0019 1 38082 38082 0.15932 0.01943 1 + 46973 23631 31537 32280 54946 54946 0.1152998314753404 PPPPCAQWKEK 11 Unmodified _PPPPCAQWKEK_ 0 0 0 ENST00000479237.5_1_9:131773211-131773688:-|nuORF ENST00000479237.5_1_9:131773211-131773688:-|nuORF ENST00000479237.5_1_9:131773211-131773688:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.6806030273438 3 427.553386 1279.63833 0.39185 0.00016754 -2.169 -0.00092738 -1.7772 -0.00075984 427.5525499138606 40.257 0.12428 39.96 39.903 40.028 -0.29716 8 5 2 0 0 0 0.30303 1 21255 21255 5.4027 2.3304 1 697510 46974 14033 31538 32281 54947 54947 0.009694325540067439 PPPPCSLICP 10 Unmodified _PPPPCSLICP_ 0 0 0 REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF REV__ENST00000400762.7_1_4:1193492-1195154:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.253662109375 2 512.253731 1022.49291 0.02995 1.5342E-05 -0.88244 -0.00045203 -0.85249 -0.00043669 512.2533958366838 43.51 0.74261 43.199 42.82 43.563 -0.31039 94 35 4 0 0 0 0.48834 1 23095 23095 16.942 4.4107 1 43731000 + 46975 26599 31539 32282 54948 54948 -0.017437465665352647 PPPPGEAL 8 Unmodified _PPPPGEAL_ 0 0 0 ENST00000575301.5_1_17:7308593-7311834:+|nuORF ENST00000575301.5_1_17:7308593-7311834:+|nuORF ENST00000575301.5_1_17:7308593-7311834:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.5367126464844 2 389.210704 776.406855 NaN NaN NaN NaN NaN NaN NaN 18.659 1 16.038 15.538 16.538 -2.6215 0 0 0 0.95607 1 9842 9842 9.3474 0 1 46976 15514 31540 32283 54949 54949 0.009707529145998706 PPPPGWWP 8 Unmodified _PPPPGWWP_ 0 0 0 REV__ENSG00000181284|ENST00000323206|TMEM102 REV__ENSG00000181284|ENST00000323206|TMEM102 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2334899902344 2 467.234513 932.454474 1.1283 0.00052719 -1.5723 -0.00073463 -0.44398 -0.00020744 467.23342381394485 96.17 0.38325 89.994 89.767 90.15 -6.1757 42 23 2 0 0 0 0.61999 1 63626 63626 24.21 0.18939 1 9987400 + 46977 23198 31541 32284 54950 54950 -0.01445548094534388 PPPPHQAL 8 Unmodified _PPPPHQAL_ 0 0 0 ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7378845214844 2 428.73742 855.460287 0.6462 0.00027705 0.07678 3.2919E-05 0.72298 0.00030997 428.73757245983995 46.295 0.44942 41.285 41.025 41.474 -5.0098 60 31 3 0 0 0 0.50586 1 28564 28564 34.187 0 1 37913000 46978 15031 31542 32285 54951 54951 0.026775504171382636 PPPPHQAL 8 Unmodified _PPPPHQAL_ 0 0 0 ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 428.73742 855.460287 -0.22603 -9.6906E-05 -0.70363 -0.00030167 -0.92966 -0.00039858 428.7372308879627 41.975 0.26429 41.668 41.515 41.779 -0.30682 0.19131 -0.00050903 NaN 34.187 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4079900 46979 15031 31542 32285 0.026775504171382636 PPPPPEPGPR 10 Unmodified _PPPPPEPGPR_ 0 0 0 REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1 REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7586059570312 2 520.779816 1039.54508 0.19852 0.00010338 3.9417 0.0020527 4.1402 0.0021561 521.2838153065857 58.913 0.063026 58.422 58.369 58.432 -0.49079 4 2 2 0 0 0 0.23117 1 32047 32047 11.64 4.9171 1 403520 + 46980 24013 31543 32286 54952 54952 0.026888761630971203 PPPPPHRGGDL 11 Unmodified _PPPPPHRGGDL_ 0 0 0 HNRNPK|p.P315H|1|0.18|ENSG00000165119|chr9:83971891-83971891|G/T|missense_variant HNRNPK|p.P315H|1|0.18|ENSG00000165119|chr9:83971891-83971891|G/T|missense_variant HNRNPK|p.P315H|1|0.18|ENSG00000165119|chr9:83971891-83971891|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5378112792969 3 380.536724 1138.58834 0.87402 0.0003326 1.3706 0.00052157 2.2446 0.00085416 380.5373420738699 27.835 0.63801 24.687 24.384 25.022 -3.1482 74 33 3 0 0 0 0.65108 1 15428 15428 4.4062 0 1 46907000 46981 15927 31544 32287 54953 54953 0.024590659403884274 PPPPPHVF 8 Unmodified _PPPPPHVF_ 0 0 0 REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF REV__ENST00000489822.5_1_10:121336540-121356247:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2410888671875 2 444.242338 886.470124 NaN NaN NaN NaN NaN NaN NaN 57.841 1 57.775 57.275 58.275 -0.066036 0 0 0 0.9706 1 31489 31489 6.3541 0 1 + 46982 27869 31545 32288 54954 54954 0.02234738422509963 PPPPPKTRY 9 Unmodified _PPPPPKTRY_ 0 0 0 CYLC1|p.P636T|1|0.2|ENSG00000183035|chrX:83874614-83874614|C/A|missense_variant CYLC1|p.P636T|1|0.2|ENSG00000183035|chrX:83874614-83874614|C/A|missense_variant CYLC1|p.P636T|1|0.2|ENSG00000183035|chrX:83874614-83874614|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.798095703125 2 526.798009 1051.58147 1.0561 0.00055638 0.51826 0.00027302 1.5744 0.00082939 526.7979412387576 32.45 0.33562 28.594 28.418 28.753 -3.8562 27 18 2 0 0 0 0.1773 1 18483 18483 25.399 2.663 1 7799300 46983 225 31546 32289 54955 54955 0.05773753059793307 PPPPPPHFR 9 Unmodified _PPPPPPHFR_ 0 0 0 ENST00000462625.1_1_22:31608346-31654562:+|nuORF ENST00000462625.1_1_22:31608346-31654562:+|nuORF ENST00000462625.1_1_22:31608346-31654562:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7581787109375 2 521.285069 1040.55558 0.2216 0.00011552 -2.5153 -0.0013112 -2.2937 -0.0011956 521.7846870549071 59.389 0.21745 58.898 58.75 58.968 -0.49079 14 9 2 0 0 0 0.203 1 32260 32260 9.3474 0 1 438760 46984 13683 31547 32290 54956 54956 0.03692903608157394 PPPPQQFPQF 10 Unmodified _PPPPQQFPQF_ 0 0 0 nc|ENSG00000162889|P49137-2|MAPKAPK2;ENSG00000162889|ENST00000367103|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 nc|ENSG00000162889|P49137-2|MAPKAPK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8479614257812 2 591.800749 1181.58694 0.51461 0.00030455 2.3235 0.0013751 2.8382 0.0016796 591.8027213374384 65.242 0.38871 65.242 64.956 65.345 7.6294E-06 33 18 2 0 0 0 0.22327 1 35731 35731 13.906 0 1 5688400 46985 6926 31548 32291 54957 54957 0.0034143185159791756 PPPQHERSF 9 Unmodified _PPPQHERSF_ 0 0 0 REV__ENSG00000069020|ENST00000403625|MAST4 REV__ENSG00000069020|ENST00000403625|MAST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5172424316406 3 365.51744 1093.53049 -0.39442 -0.00014417 0.17537 6.4102E-05 -0.21905 -8.0066E-05 365.5174915977514 24.639 0.39739 24.639 24.405 24.802 0 75 21 5 0 0 0 0.45045 1 12580 12580 6.6304 0 1 38132000 + 46986 17446 31549 32292 54958 54958 -0.012531959850548446 PPPQPPPMYSQ 11 Unmodified _PPPQPPPMYSQ_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.7990112304688 2 619.797349 1237.58014 NaN NaN NaN NaN NaN NaN NaN 62.379 1 61.892 61.392 62.392 -0.48764 0 0 0 0.82644 1 33987 33987 10.8 4.0763 1 + 46987 19195 31550 32293 54959 54959 -0.029142490912818175 PPPQPPQQQQL 11 Unmodified _PPPQPPQQQQL_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.7200927734375 3 419.891055 1256.65134 1.2552 0.00052703 4.2348 0.0017782 5.4899 0.0023052 420.2268619693224 19.224 0.19522 16.567 16.404 16.599 -2.6564 19 12 2 0 0 0 0.2909 1 10150 10150 14.218 4.9744 1 13510000 + 46988 20929 31551 32294 54960 54960 0.03327586937757587 PPPQTPVQ 8 Unmodified _PPPQTPVQ_ 0 0 0 REV__ENST00000497036.5_1_22:50687618-50688730:-|nuORF REV__ENST00000497036.5_1_22:50687618-50688730:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.4629516601562 1 863.462144 862.454868 0.99179 0.00085638 0.51894 0.00044809 1.5107 0.0013045 863.4625223509391 40.832 0.33624 36.303 36.13 36.466 -4.5294 34 20 2 0 0 0 0.21098 2 24364 24364;24492 68.081 9.4019 1 6890000 + 46989 27972 31552 32295 54961;54962 54961 0.01813826834666088 PPPQTVAE 8 Unmodified _PPPQTVAE_ 0 0 0 nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13 nc|ENSG00000163629|Q12923-3|PTPN13 nc|ENSG00000163629|Q12923-3|PTPN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7197570800781 2 419.718893 837.423233 0.015382 6.4561E-06 0.87245 0.00036619 0.88784 0.00037264 419.71922962971837 18.195 0.26944 18.201 18.03 18.3 0.0060482 70 24 4 0 0 0 0.67686 1 9152 9152 19.257 0 1 37071000 46990 7034 31553 32296 54963 54963 -0.0019816591927792615 PPPRNWML 8 Unmodified _PPPRNWML_ 0 0 0 ENST00000238616.9_1_14:75576389-75576530:-|nuORF ENST00000238616.9_1_14:75576389-75576530:-|nuORF ENST00000238616.9_1_14:75576389-75576530:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7658081054688 2 505.765655 1009.51676 0.12278 6.2097E-05 -1.3178 -0.00066652 -1.1951 -0.00060442 505.7649397549641 83.067 0.31741 82.569 82.38 82.698 -0.49751 20 12 2 0 0 0 0.80624 1 45425 45425 2.8892 0 1 1386300 46991 11097 31554 32297 54964 54964 0.012378549821505658 PPPRNWML 8 Unmodified _PPPRNWML_ 0 0 0 ENST00000238616.9_1_14:75576389-75576530:-|nuORF ENST00000238616.9_1_14:75576389-75576530:-|nuORF ENST00000238616.9_1_14:75576389-75576530:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.765655 1009.51676 1.4239 0.00072018 -2.3835 -0.0012055 -0.95959 -0.00048533 505.7644489049874 82.372 0.31425 82.434 82.296 82.61 0.062004 -0.067747 -0.00037021 NaN 2.8892 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2598800 46992 11097 31554 32297 0.012378549821505658 PPPTEAAIEP 10 Unmodified _PPPTEAAIEP_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2637329101562 2 511.263665 1020.51278 0.44597 0.00022801 0.17527 8.9612E-05 0.62125 0.00031762 511.2634679203458 35.334 0.37526 31.239 31.041 31.416 -4.0951 39 22 2 0 0 0 0.14917 1 20514 20514 39.957 0.0076237 1 39003000 + 46993 30021 31555 32298 54965 54965 0.0033404396941705272 PPPTFHQLL 9 Unmodified _PPPTFHQLL_ 0 0 0 ENST00000583268.1_1_17:38412687-38430062:+|nuORF ENST00000583268.1_1_17:38412687-38430062:+|nuORF ENST00000583268.1_1_17:38412687-38430062:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1982116699219 3 350.530798 1048.57057 0.96354 0.00033775 4.3472 0.0015238 5.3108 0.0018616 350.53302469222075 24.282 0.36894 21.455 21.265 21.634 -2.8273 39 20 3 0 0 0 0.43463 1 13280 13280 10.8 1.8233 1 3920100 46994 15583 31556 32299 54966 54966 0.04822350685526544 PPPTPLPEEL 10 Unmodified _PPPTPLPEEL_ 0 0 0 REV__ENST00000272117.7_1_1:226820812-226820974:-|nuORF REV__ENST00000272117.7_1_1:226820812-226820974:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8657531738281 3 363.865735 1088.57538 1.1086 0.00040338 -0.072964 -2.6549E-05 1.0356 0.00037683 363.8655688718957 17.51 0.69865 14.924 14.693 15.392 -2.5866 443 106 5 0 0 0 0.074936 4 9147 9044;9147;9252;9357 37.075 20.509 1 1225800000 + 46995 25143 31557 32300 54967;54968;54969;54970 54968 0.0346319003760982 PPPTPPGPPPG 11 Unmodified _PPPTPPGPPPG_ 0 0 0 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.769287109375 2 505.768917 1009.52328 0.21503 0.00010875 0.52609 0.00026608 0.74112 0.00037484 505.76919710793425 46.78 0.29184 46.443 46.29 46.582 -0.33664 37 14 3 0 0 0 0.44389 1 25120 25120 19.257 0 1 19044000 + 46996 23835 31558 32301 54971 54971 0.018900714145274833 PPPTRVGF 8 Unmodified _PPPTRVGF_ 0 0 0 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1 ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7452087402344 2 435.745245 869.475937 -0.58309 -0.00025408 -0.5851 -0.00025496 -1.1682 -0.00050903 435.7452836132295 28.407 0.4121 28.407 28.271 28.683 0 35 22 2 0 0 0 0.5284 1 14676 14676 32.117 3.9437 1 5491900 46997 7378 31559 32302 54972 54972 0.035978369341819416 PPPTRVGF 8 Unmodified _PPPTRVGF_ 0 0 0 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1 ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7456359863281 2 435.745245 869.475937 1.2262 0.00053433 0.0004412 1.9225E-07 1.2267 0.00053452 435.7449690461622 42.678 0.23561 37.993 37.82 38.055 -4.6846 23 15 2 0 0 0 0.6895 1 25822 25822 18.135 1.1927 1 5930100 46998 7378 31559 32302 54973 54973 0.035978369341819416 PPPTSMAS 8 Unmodified _PPPTSMAS_ 0 0 0 REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 393.8957214355469 2 394.186371 786.35819 NaN NaN NaN NaN NaN NaN NaN 17.42 1 14.833 14.333 15.333 -2.5866 0 0 0 0.97348 1 9106 9106 5.7604 0 1 + 46999 28783 31560 32303 54974 54974 -0.04353483716795381 PPPTVMPITNK 11 Unmodified _PPPTVMPITNK_ 0 0 0 REV__ENSG00000016602|ENST00000370563|CLCA4 REV__ENSG00000016602|ENST00000370563|CLCA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8778076171875 3 398.889886 1193.64783 -0.0044814 -1.7876E-06 2.423 0.00096651 2.4185 0.00096472 398.8907732418693 28.425 0.25789 28.454 28.262 28.52 0.029564 17 10 2 0 0 0 0.30551 1 14775 14775 2.6312 0 1 2663900 + 47000 17092 31561 32304 54975 54975 0.058752008395231314 PPPYYPPEDK 10 Unmodified _PPPYYPPEDK_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000587642.5_1_17:73842817-73843099:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2894287109375 2 601.790047 1201.56554 0.48097 0.00028944 -1.0383 -0.00062482 -0.55731 -0.00033538 602.2902994617973 68.345 0.82278 67.864 67.577 68.399 -0.48071 50 37 2 0 0 0 0.57332 1 37299 37299 12.532 1.7076 1 4644900 47001 4413 31562 32305 54976 54976 -0.027179979677839583 PPQIQISDLL 10 Unmodified _PPQIQISDLL_ 0 0 0 REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2171630859375 3 375.216768 1122.62847 1.681 0.00063073 -0.19747 -7.4094E-05 1.4835 0.00055664 375.2166501404919 20.655 0.54035 17.962 17.723 18.264 -2.693 107 32 4 0 0 0 0.49559 1 11031 11031 16.566 5.6669 1 85549000 + 47002 18065 31563 32306 54977 54977 0.07206567820298915 PPQKRGTHR 9 Unmodified _PPQKRGTHR_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8065185546875 2 538.807231 1075.59991 0.28846 0.00015542 -0.40811 -0.00021989 -0.11965 -6.4466E-05 538.8065361935306 92.666 0.24619 92.209 92.088 92.334 -0.4574 18 10 2 0 0 0 0.61381 1 50639 50639 0.52476 0 1 588960 + 47003 21090 31564 32307 54978 54978 0.06513307754357811 PPQKRGTHR 9 Unmodified _PPQKRGTHR_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.807231 1075.59991 0.28846 0.00015542 -0.40811 -0.00021989 -0.11965 -6.4466E-05 538.8065361935306 92.666 0.24619 92.209 92.088 92.334 -0.4574 0 0 NaN 0.52476 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 588960 + 47004 21090 31564 32307 0.06513307754357811 PPQPPQQQQLP 11 Unmodified _PPQPPQQQQLP_ 0 0 0 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 REV__nc|ENSG00000148143|Q96JM2-3|ZNF462 MSMS AL20221201_MKP_PDAC_01 4 419.8915710449219 3 419.891055 1256.65134 NaN NaN NaN NaN NaN NaN NaN 20.883 1 18.19 17.69 18.69 -2.693 0 0 0 0.93737 1 11146 11146 4.4062 1.4109 1 + 47005 20929 31565 32308 54979 54979 0.03327586937757587 PPQRLKGVVPI 11 Unmodified _PPQRLKGVVPI_ 0 0 0 REV__ENST00000307365.3_1_10:74034942-74035086:+|nuORF REV__ENST00000307365.3_1_10:74034942-74035086:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2399291992188 3 401.923919 1202.74993 -0.18658 -7.499E-05 0.074983 3.0137E-05 -0.11159 -4.4853E-05 401.9239961684013 37.935 0.18962 37.952 37.881 38.071 0.01704 13 8 2 0 0 0 0.30073 1 20185 20185 4.7159 0.52642 1 2043600 + 47006 25389 31566 32309 54980 54980 0.15666234973468818 PPQYVLPTY 9 Unmodified _PPQYVLPTY_ 0 0 0 ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A ENSG00000068697|ENST00000175091|LAPTM4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2835693359375 2 539.2844 1076.55425 NaN NaN NaN NaN NaN NaN NaN 48.072 1 48.033 47.533 48.533 -0.038643 0 0 0 0.36554 1 25920 25920 21.747 2.3076 1 47007 984 31567 32310 54981 54981 0.01903224728744135 PPRFSWPAEIC 11 Unmodified _PPRFSWPAEIC_ 0 0 0 ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825988769531 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 19.905 1 19.905 19.405 20.405 0 0 0 0 0.94307 1 9986 9986 0.08335 0 1 47008 11914 31568 32311 54982 54982 -0.016068539630168743 PPRFSWPAEIC 11 Unmodified _PPRFSWPAEIC_ 0 0 0 ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8829345703125 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 85.474 1 85.474 84.974 85.974 0 0 0 0 0.94307 1 47367 47367 0.08335 0 1 47009 11914 31568 32311 54983 54983 -0.016068539630168743 PPRFSWPAEIC 11 Unmodified _PPRFSWPAEIC_ 0 0 0 ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824768066406 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 87.848 1 87.848 87.348 88.348 0 0 0 0 0.94307 1 48636 48636 0.08335 0 1 47010 11914 31568 32311 54984 54984 -0.016068539630168743 PPRFSWPAEIC 11 Unmodified _PPRFSWPAEIC_ 0 0 0 ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824768066406 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 96.362 1 96.362 95.862 96.862 0 0 0 0 0.94307 1 53252 53252 0.08335 0 1 47011 11914 31568 32311 54985 54985 -0.016068539630168743 PPRFSWPAEIC 11 Unmodified _PPRFSWPAEIC_ 0 0 0 ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF ENST00000336615.8_2_11:825115-825166:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821105957031 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 101.29 1 101.29 100.79 101.79 0 0 0 0 0.94307 1 55881 55881 0.08335 0 1 47012 11914 31568 32311 54986 54986 -0.016068539630168743 PPRLQDFRCL 10 Unmodified _PPRLQDFRCL_ 0 0 0 ENSG00000160447|ENST00000291906|PKN3;ENST00000485301.1_1_9:131477094-131479133:+|nuORF ENSG00000160447|ENST00000291906|PKN3 ENSG00000160447|ENST00000291906|PKN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5575866699219 3 415.55713 1243.64956 -0.1327 -5.5146E-05 -0.20272 -8.4242E-05 -0.33542 -0.00013939 415.55720690797165 35.127 0.3358 35.154 34.973 35.309 0.027401 24 15 2 0 0 0 0.56348 1 18533 18533 7.9454 0 1 2957800 47013 6729 31569 32312 54987 54987 0.037482546481442114 PPRPGGGGL 9 Unmodified _PPRPGGGGL_ 0 0 0 REV__ENSG00000185271|ENST00000636854|KLHL33 REV__ENSG00000185271|ENST00000636854|KLHL33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.895263671875 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 14.727 1 14.733 14.233 15.233 0.0057774 0 0 0 0.84564 1 7314 7314 2.0598 1.2661 1 + 47014 23488 31570 32313 54988 54988 0.028923797573497723 PPRPPPYGLRG 11 Unmodified _PPRPPPYGLRG_ 0 0 0 REV__ENST00000427220.5_1_3:9851662-9852079:+|nuORF REV__ENST00000427220.5_1_3:9851662-9852079:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.8970336914062 3 402.896252 1205.66693 NaN NaN NaN NaN NaN NaN NaN 28.965 1 28.995 28.495 29.495 0.030106 0 0 0 0.90499 1 15097 15097 7.0371 2.6309 1 + 47015 26919 31571 32314 54989 54989 0.07231918245452107 PPRVDIRSLPT 11 Unmodified _PPRVDIRSLPT_ 0 0 0 REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 REV__nc|ENSG00000105559|Q9H4M7-2|PLEKHA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.5809326171875 3 417.5787 1249.71427 NaN NaN NaN NaN NaN NaN NaN 48.833 1 48.79 48.29 49.29 -0.04369 0 0 0 0.91362 1 26365 26365 6.6235 3.3038 1 + 47016 18434 31572 32315 54990 54990 0.0994015272578963 PPRVGFPP 8 Unmodified _PPRVGFPP_ 0 0 0 REV__ENSG00000139445|ENST00000299162|FOXN4 REV__ENSG00000139445|ENST00000299162|FOXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7479858398438 2 433.747788 865.481023 0.30909 0.00013407 0.14127 6.1277E-05 0.45037 0.00019535 433.7477880920906 41.133 0.71161 41.132 40.711 41.422 -0.0017891 94 34 3 0 0 0 0.35156 2 21990 21990;22097 49.669 9.978 1 18456000 + 47017 20409 31573 32316 54991;54992 54991 0.04290140796808828 PPRVGFPP 8 Unmodified _PPRVGFPP_ 0 0 0 REV__ENSG00000139445|ENST00000299162|FOXN4 REV__ENSG00000139445|ENST00000299162|FOXN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7486267089844 2 433.747788 865.481023 0.79552 0.00034506 0.33135 0.00014372 1.1269 0.00048878 433.74783723852727 45.597 0.80504 40.642 40.299 41.104 -4.9549 131 54 3 0 0 0 0.35156 2 27841 27841;28135 49.669 6.7009 1 82487000 + 47018 20409 31573 32316 54993;54994 54993 0.04290140796808828 PPSAPPSF 8 Unmodified _PPSAPPSF_ 0 0 0 REV__nc|ENSG00000183248|Q9H6K5-2|PRR36 REV__nc|ENSG00000183248|Q9H6K5-2|PRR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2033996582031 2 400.202879 798.391205 0.11675 4.6725E-05 1.1637 0.00046572 1.2805 0.00051245 400.20322668816226 48.679 0.35429 48.636 48.455 48.81 -0.04369 25 17 2 0 0 0 0.28922 1 26238 26238 56.541 2.9657 1 3344900 + 47019 23331 31574 32317 54995 54995 -0.016055336024351163 PPSASARHMAL 11 Unmodified _PPSASARHMAL_ 0 0 0 nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7965087890625 2 569.295307 1136.57606 1.05 0.00059777 -2.2007 -0.0012528 -1.1507 -0.00065507 569.7966853300039 85.86 0.54946 79.684 79.407 79.957 -6.1757 61 30 3 0 0 0 0.5229 1 56583 56583 15.248 2.206 1 15936000 47020 4474 31575 32318 54996 54996 0.013237062056759896 PPSEGEEDEEL 11 Unmodified _PPSEGEEDEEL_ 0 0 0 nc|ENSG00000145808|Q8TE59|ADAMTS19;ENSG00000145808|ENST00000274487|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 nc|ENSG00000145808|Q8TE59|ADAMTS19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.8370361328125 3 410.838462 1229.49356 NaN NaN NaN NaN NaN NaN NaN 38.291 1 38.291 37.791 38.791 0 0 0 0 0.93984 1 20441 20441 2.6312 0.54523 1 47021 5727 31576 32319 54997 54997 -0.11201001902782082 PPSGPKKQQ 9 Unmodified _PPSGPKKQQ_ 0 0 0 ENST00000341084.6_1_8:101271265-101271364:-|nuORF ENST00000341084.6_1_8:101271265-101271364:-|nuORF ENST00000341084.6_1_8:101271265-101271364:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.7720642089844 2 483.771991 965.529429 0.0025024 1.2106E-06 1.0685 0.00051693 1.071 0.00051814 483.77264851687363 30.725 0.20543 30.755 30.625 30.83 0.030104 13 8 2 0 0 0 0.55144 1 16079 16079 4.3292 1.334 1 1097200 47022 11962 31577 32320 54998 54998 0.045285896460427466 PPSGPKKQQ 9 Unmodified _PPSGPKKQQ_ 0 0 0 ENST00000341084.6_1_8:101271265-101271364:-|nuORF ENST00000341084.6_1_8:101271265-101271364:-|nuORF ENST00000341084.6_1_8:101271265-101271364:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 483.771991 965.529429 0.5118 0.0002476 0.59357 0.00028715 1.1054 0.00053475 483.77214551622814 30.906 0.1741 30.803 30.717 30.891 -0.10269 0.024009 -0.00021746 NaN 4.3292 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1288100 47023 11962 31577 32320 0.045285896460427466 PPSHMYRSY 9 Unmodified _PPSHMYRSY_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7608642578125 2 569.260933 1136.50731 0.36001 0.00020494 -1.7653 -0.0010049 -1.4053 -0.0008 569.2599976952488 68.972 0.43295 68.491 68.286 68.719 -0.48071 46 18 3 0 0 0 0.55775 1 37774 37774 3.9444 0.3479 1 4910300 47024 1726 31578 32321 54999 54999 -0.055479580940300366 PPSHPDIF 8 Unmodified _PPSHPDIF_ 0 0 0 ENSG00000167548|ENST00000301067|KMT2D;nc|ENSG00000167548|O14686-3|KMT2D;KMT2D|p.A2491Gfs*15|1|0.21|ENSG00000167548|chr12:49040298-49040299|-/C|frameshift_variant;KMT2D|p.L2594Pfs*61|1|0.12|ENSG00000167548|chr12:49039989-49039990|-/G|frameshift_variant ENSG00000167548|ENST00000301067|KMT2D ENSG00000167548|ENST00000301067|KMT2D MSMS AL20221201_MKP_PDAC_01 4 455.2414855957031 2 455.226885 908.439217 NaN NaN NaN NaN NaN NaN NaN 94.312 1 88.136 87.636 88.636 -6.1757 0 0 0 0.95201 1 62465 62465 10.183 0 1 47025 7628 31579 32322 55000 55000 -0.018664596823896318 PPSHPWFSV 9 Unmodified _PPSHPWFSV_ 0 0 0 REV__ENST00000492715.1_1_X:48457171-48457486:+|nuORF REV__ENST00000492715.1_1_X:48457171-48457486:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1770324707031 3 351.843265 1052.50797 NaN NaN NaN NaN NaN NaN NaN 18.199 1 18.199 17.699 18.699 0 0 0 0 0.84564 1 9029 9029 1.0715 0.61312 1 + 47026 27910 31580 32323 55001 55001 -0.01618795382682947 PPSITWYK 8 Unmodified _PPSITWYK_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2659912109375 2 496.26601 990.517468 0.51413 0.00025515 -0.56645 -0.00028111 -0.052312 -2.5961E-05 496.26563050043274 88.348 0.33137 87.844 87.624 87.956 -0.50423 26 14 2 0 0 0 0.80992 1 48366 48366 0.69038 0 1 921770 47027 998 31581 32324 55002 55002 0.021829729028468137 PPSLEQHPAF 10 Unmodified _PPSLEQHPAF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.784423828125 2 561.782556 1121.55056 1.2035 0.00067612 -1.1246 -0.0006318 0.078891 4.4319E-05 561.7822110206316 50.7 0.39316 50.646 50.449 50.842 -0.053875 30 19 2 0 0 0 0.48505 1 27514 27514 17.113 0.1706 1 21894000 47028 3677 31582 32325 55003 55003 -0.005354450451022785 PPSPPVLPE 9 Unmodified _PPSPPVLPE_ 0 0 0 ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1 ENST00000497660.5_1_1:8390216-8404070:+|nuORF ENST00000497660.5_1_1:8390216-8404070:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7589721679688 2 466.758018 931.501483 0.56786 0.00026505 0.91616 0.00042762 1.484 0.00069267 466.75862408042485 39.636 1.984 35.185 34.028 36.012 -4.4509 240 137 3 0 0 0 0.087258 2 23007 23007;23965 36.044 3.7387 1 56942000 47029 6859 31583 32326 55004;55005 55004 0.03299266665953837 PPSREPSQSAP 11 Unmodified _PPSREPSQSAP_ 0 0 0 REV__ENSG00000128652|ENST00000683222|HOXD3 REV__ENSG00000128652|ENST00000683222|HOXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7850341796875 2 576.785827 1151.5571 -0.013378 -7.7163E-06 -0.35435 -0.00020438 -0.36773 -0.0002121 576.7854010626178 22.519 0.20368 22.542 22.442 22.645 0.022896 13 8 2 0 0 0 0.66968 1 11454 11454 7.1017 0 1 1500600 + 47030 19626 31584 32327 55006 55006 -0.012615518843858808 PPSREPSQSAP 11 Unmodified _PPSREPSQSAP_ 0 0 0 REV__ENSG00000128652|ENST00000683222|HOXD3 REV__ENSG00000128652|ENST00000683222|HOXD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7863159179688 2 576.785827 1151.5571 0.36838 0.00021248 -0.29483 -0.00017006 0.073544 4.2419E-05 576.7855066616397 22.467 0.18558 22.484 22.346 22.532 0.01749 15 8 2 0 0 0 0.53952 1 11527 11527 14.405 1.3629 1 5337300 + 47031 19626 31584 32327 55007 55007 -0.012615518843858808 PPSREPSQSAP 11 Unmodified _PPSREPSQSAP_ 0 0 0 REV__ENSG00000128652|ENST00000683222|HOXD3 REV__ENSG00000128652|ENST00000683222|HOXD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.785827 1151.5571 0.36838 0.00021248 -0.29483 -0.00017006 0.073544 4.2419E-05 576.7855066616397 22.467 0.18558 22.484 22.346 22.532 0.01749 -0.028911 4.4521E-05 NaN 14.405 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5337300 + 47032 19626 31584 32327 -0.012615518843858808 PPSVFPLSSY 10 Unmodified _PPSVFPLSSY_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.77392578125 2 547.281857 1092.54916 0.27924 0.00015282 -2.9112 -0.0015933 -2.632 -0.0014405 547.2802289210828 76.556 0.38947 76.556 76.37 76.759 0 25 15 2 0 0 0 0.67033 1 42519 42519 6.2058 0.9089 1 793640 47033 665 31585 32328 55008 55008 0.006589208661580415 PPTEREKQY 9 Unmodified _PPTEREKQY_ 0 0 0 REV__nc|ENSG00000116560|P23246-2|SFPQ REV__nc|ENSG00000116560|P23246-2|SFPQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2892456054688 2 574.290745 1146.56694 NaN NaN NaN NaN NaN NaN NaN 81.85 1 81.85 81.35 82.35 0 0 0 0 0.84564 1 45420 45420 2.0598 0 1 + 47034 19047 31586 32329 55009 55009 -0.0004836387897739769 PPTFKHQHF 9 Unmodified _PPTFKHQHF_ 0 0 0 ENST00000414287.5_1_22:49808404-49808650:-|nuORF ENST00000414287.5_1_22:49808404-49808650:-|nuORF ENST00000414287.5_1_22:49808404-49808650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7911987304688 2 569.793258 1137.57196 0.42234 0.00024065 -3.5843 -0.0020423 -3.1619 -0.0018017 569.789768033591 52.733 0.47351 52.733 52.508 52.982 0 51 21 4 0 0 0 0.55775 1 29240 29240 3.9444 0.3479 1 16814000 47035 13008 31587 32330 55010 55010 0.008679847742769198 PPTLDLRR 8 Unmodified _PPTLDLRR_ 0 0 0 ENST00000252674.8_2_19:6212397-6212727:-|nuORF ENST00000252674.8_2_19:6212397-6212727:-|nuORF ENST00000252674.8_2_19:6212397-6212727:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7584838867188 2 484.287808 966.561064 -0.14335 -6.9423E-05 0.97055 0.00047002 0.8272 0.0004006 484.28830549605084 34.057 0.17396 33.866 33.77 33.944 -0.19131 10 6 2 0 0 0 8.7369 1 17764 17764 9.3474 0 1 584120 47036 11151 31588 32331 55011 55011 0.07644582400007494 PPTLGASL 8 Unmodified _PPTLGASL_ 0 0 0 REV__ENSG00000189127|ENST00000338682|ANKRD34B REV__ENSG00000189127|ENST00000338682|ANKRD34B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2192993164062 2 378.218529 754.422505 NaN NaN NaN NaN NaN NaN NaN 25.126 1 25.151 24.651 25.651 0.024429 0 0 0 0.88073 1 12988 12988 19.439 1.304 1 + 47037 23763 31589 32332 55012 55012 0.03547039431657595 PPTWSMII 8 Unmodified _PPTWSMII_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7507629394531 2 472.749139 943.483725 NaN NaN NaN NaN NaN NaN NaN 74.325 1 74.325 73.825 74.825 0 0 0 0 0.97444 1 41360 41360 5.2307 0.47466 1 + 47038 23632 31590 32333 55013 55013 0.009722281394488164 PPTYIRCVSI 10 Unmodified _PPTYIRCVSI_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5425720214844 3 383.542598 1147.60597 -0.75626 -0.00029006 -0.13192 -5.0598E-05 -0.88818 -0.00034066 383.542543843764 28.396 0.43061 28.396 28.169 28.6 0 78 23 4 0 0 0 0.46514 1 14733 14733 11.518 0.61892 1 43469000 47039 8997 31591 32334 55014 55014 0.03806645151007615 PPVAAANF 8 Unmodified _PPVAAANF_ 0 0 0 ENST00000314233.2_15:23890641-23890966:-|nuORF;ENSG00000254585|ENST00000650528|MAGEL2 ENST00000314233.2_15:23890641-23890966:-|nuORF ENST00000314233.2_15:23890641-23890966:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.208251953125 2 393.710871 785.407189 -0.56969 -0.00022429 -2.4045 -0.00094669 -2.9742 -0.001171 393.7087845630184 35.052 0.51114 35.052 34.656 35.167 0 39 26 2 0 0 0 8.7369 1 18520 18520 2.8892 0 1 5547700 47040 10777 31592 32335 55015 55015 0.005901726344632152 PPVAEAPNYQ 10 Unmodified _PPVAEAPNYQ_ 0 0 0 ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2686767578125 2 543.266739 1084.51892 -1.1707 -0.00063601 3.0779 0.0016721 1.9072 0.0010361 543.2685633315084 32.419 0.22036 32.419 32.261 32.481 0 29 13 3 0 0 0 0.18021 1 16903 16903 36.127 3.3413 1 15886000 47041 4288 31593 32336 55016 55016 -0.01995437799064348 PPVDVCLKKGD 11 Unmodified _PPVDVCLKKGD_ 0 0 0 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.877197265625 3 390.877758 1169.61144 0.01566 6.1212E-06 -0.60782 -0.00023758 -0.59216 -0.00023146 390.8773183382804 51.79 0.48671 51.731 51.474 51.961 -0.058914 76 23 4 0 0 0 0.68427 1 28169 28169 2.6312 0.72486 1 8520400 47042 4204 31594 32337 55017 55017 0.03342323942820258 PPVENCADFDF 11 Unmodified _PPVENCADFDF_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2611694335938 2 627.260796 1252.50704 0.32596 0.00020446 -0.070187 -4.4025E-05 0.25577 0.00016043 627.2607434015936 66.204 0.37085 66.204 66.05 66.421 0 43 16 3 0 0 0 0.44182 2 36893 36893;36990 19.362 0 1 6146000 + 47043 19709 31595 32338 55018;55019 55018 -0.10911422604544896 PPVENCADFDF 11 Unmodified _PPVENCADFDF_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.260986328125 2 627.260796 1252.50704 0.058414 3.6641E-05 0.41537 0.00026054 0.47378 0.00029718 627.2610141176565 71.9 0.31976 71.9 71.734 72.054 0 32 14 3 0 0 0 0.65108 1 40008 40008 8.7454 0 1 1352000 + 47044 19709 31595 32338 55020 55020 -0.10911422604544896 PPVENCADFDF 11 Unmodified _PPVENCADFDF_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2607421875 2 627.260796 1252.50704 0.076221 4.7811E-05 0.19297 0.00012104 0.26919 0.00016886 627.2609186997679 66.744 0.41301 66.26 66.046 66.459 -0.48323 42 19 3 0 0 0 0.15156 2 36492 36390;36492 36.506 6.6656 1 8777100 + 47045 19709 31595 32338 55021;55022 55022 -0.10911422604544896 PPVENCADFDF 11 Unmodified _PPVENCADFDF_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2626342773438 2 627.260796 1252.50704 0.42974 0.00026956 -0.75751 -0.00047516 -0.32777 -0.0002056 627.2603610589694 72.338 0.40588 71.862 71.636 72.041 -0.47609 59 18 4 0 0 0 0.53952 2 39528 39528;39625 14.405 0 1 6116800 + 47046 19709 31595 32338 55023;55024 55023 -0.10911422604544896 PPVENCADFDF 11 Unmodified _PPVENCADFDF_ 0 0 0 REV__ENSG00000130254|ENST00000252542|SAFB2 REV__ENSG00000130254|ENST00000252542|SAFB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.260796 1252.50704 0.42974 0.00026956 -0.75751 -0.00047516 -0.32777 -0.0002056 627.2603610589694 72.338 0.40588 71.862 71.636 72.041 -0.47609 -0.019307 -0.00038691 NaN 14.405 59 18 4 NaN NaN NaN NaN 0 NaN NaN 0 6116800 + 47047 19709 31595 32338 -0.10911422604544896 PPVGGFSF 8 Unmodified _PPVGGFSF_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4052734375 1 807.403566 806.39629 0.91289 0.00073707 1.795 0.0014493 2.7079 0.0021864 807.4048675421224 82.952 0.44473 83.014 82.788 83.232 0.062004 22 16 2 0 0 0 0.50586 1 45844 45844 34.187 1.7337 1 4322400 47048 4883 31596 32339 55025 55025 -0.014652297398129122 PPVGGFSF 8 Unmodified _PPVGGFSF_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.405029296875 1 807.403566 806.39629 1.5109 0.0012199 -0.013713 -1.1072E-05 1.4972 0.0012088 807.4037461602733 90.863 0.56801 84.687 84.444 85.012 -6.1757 59 33 2 0 0 0 0.086157 3 60063 59932;60063;60204 104.31 51.976 1 14941000 47049 4883 31596 32339 55026;55027;55028 55027 -0.014652297398129122 PPVGPPRF 8 Unmodified _PPVGPPRF_ 0 0 0 ENST00000375614.6_1_11:111431307-111431388:+|nuORF ENST00000375614.6_1_11:111431307-111431388:+|nuORF ENST00000375614.6_1_11:111431307-111431388:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7481994628906 2 433.747788 865.481023 0.79552 0.00034506 0.33135 0.00014372 1.1269 0.00048878 433.74783723852727 45.597 0.80504 40.642 40.299 41.104 -4.9549 131 54 3 0 0 0 0.32412 1 27994 27994 52.693 9.7251 1 82487000 47050 12477 31597 32340 55029 55029 0.04290140796797459 PPVGRARP 8 Unmodified _PPVGRARP_ 0 0 0 REV__ENSG00000131773|ENST00000355849|KHDRBS3 REV__ENSG00000131773|ENST00000355849|KHDRBS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.8877258300781 2 425.256311 848.49807 0.15076 6.4111E-05 -0.4379 -0.00018622 -0.28714 -0.00012211 425.25609192089746 28.666 0.2069 28.695 28.569 28.776 0.029564 13 7 2 0 0 0 8.7369 1 14900 14900 6.3541 0 1 4939900 + 47051 19811 31598 32341 55030 55030 0.06776061402604228 PPVLVSIVS 9 Unmodified _PPVLVSIVS_ 0 0 0 REV__ENST00000251181.8_1_14:105360511-105361292:+|nuORF REV__ENST00000251181.8_1_14:105360511-105361292:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.5595092773438 1 910.560795 909.553519 0.038658 3.52E-05 0.018015 1.6403E-05 0.056672 5.1604E-05 910.5609984127641 75.938 0.47763 75.461 75.235 75.712 -0.47714 39 20 2 0 0 0 0.58466 1 41705 41705 2.3027 0 1 1744600 + 47052 24886 31599 32342 55031 55031 0.0951243007971243 PPWPPKALVL 10 Unmodified _PPWPPKALVL_ 0 0 0 ENST00000404284.6_1_22:35717823-35727385:+|nuORF ENST00000404284.6_1_22:35717823-35727385:+|nuORF ENST00000404284.6_1_22:35717823-35727385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3429565429688 2 559.342052 1116.66955 0.71185 0.00039817 -0.24582 -0.0001375 0.46602 0.00026067 559.3422788067675 39.935 0.21535 39.94 39.811 40.026 0.0050545 19 9 3 0 0 0 0.6192 1 21269 21269 3.9444 0.3479 1 1345600 47053 12913 31600 32343 55032 55032 0.11588373650397443 PPWRDRTN 8 Unmodified _PPWRDRTN_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2648315429688 2 521.264865 1040.51518 NaN NaN NaN NaN NaN NaN NaN 5.1525 1 5.1536 4.6536 5.6536 0.0010915 0 0 0 0.97444 1 2595 2595 0.79363 0 1 47054 4817 31601 32344 55033 55033 -0.003460627822278184 PPYFEGAPF 9 Unmodified _PPYFEGAPF_ 0 0 0 nc|ENSG00000171813|Q6NUJ5-2|PWWP2B;ENSG00000171813|ENST00000305233|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B nc|ENSG00000171813|Q6NUJ5-2|PWWP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.741455078125 2 512.742368 1023.47018 0.47513 0.00024362 2.236 0.0011465 2.7111 0.0013901 512.7440433636159 60.965 0.33535 60.965 60.788 61.123 0 23 13 2 0 0 0 0.53666 1 34074 34074 5.2307 0 1 1234100 47055 8144 31602 32345 55034 55034 -0.040613063681462336 PPYPAQSK 8 Unmodified _PPYPAQSK_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4609375 1 887.462144 886.454868 0.076027 6.7471E-05 -2.7383 -0.0024301 -2.6622 -0.0023626 887.4601683171174 102.95 0.065056 102.95 102.9 102.96 0 4 2 2 0 0 0 0.80975 1 56765 56765 0.79363 0.10326 1 1216400 47056 6406 31603 32346 55035 55035 0.007098268346680925 PPYPAQSK 8 Unmodified _PPYPAQSK_ 0 0 0 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.459716796875 1 887.462144 886.454868 0.075143 6.6687E-05 -2.0069 -0.001781 -1.9317 -0.0017143 887.459626926836 103.12 0.070618 103.12 103.06 103.13 0 10 4 3 0 0 0 0.80975 1 56856 56856 0.79363 0.10326 1 4288000 47057 6406 31603 32346 55036 55036 0.007098268346680925 PPYPPYEE 8 Unmodified _PPYPPYEE_ 0 0 0 REV__nc|ENSG00000143514|Q13625|TP53BP2;REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2261962890625 2 496.224008 990.433463 2.5164 0.0012487 2.1379 0.0010609 4.6543 0.0023096 496.2250564491775 96.655 0.32706 96.648 96.445 96.772 -0.007019 18 11 2 0 0 0 0.80143 1 53696 53696 5.7604 0.52976 1 1265500 + 47058 30124;20647 31604 32347 55037 55037 -0.062136029847238206 PQACAELDAA 10 Unmodified _PQACAELDAA_ 0 0 0 REV__ENSG00000235718|ENST00000619721|MFRP REV__ENSG00000235718|ENST00000619721|MFRP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7237548828125 2 494.723849 987.433146 NaN NaN NaN NaN NaN NaN NaN 0.023091 1 0.0010255 -0.49897 0.50103 -0.022065 0 0 0 1.0061 1 11 11 0 0 1 + 47059 24421 31605 32348 55038 55038 -0.06107345976238321 PQAEPTWI 8 Unmodified _PQAEPTWI_ 0 0 0 ENST00000585357.1_1_19:38782298-38782643:+|nuORF ENST00000585357.1_1_19:38782298-38782643:+|nuORF ENST00000585357.1_1_19:38782298-38782643:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2391357421875 2 471.239993 940.465432 NaN NaN NaN NaN NaN NaN NaN 65.813 1 65.813 65.313 66.313 0 0 0 0 0.97444 1 36706 36706 5.2307 0.90143 1 47060 15605 31606 32349 55039 55039 -0.007181905109064246 PQAGLPQIIQN 11 Unmodified _PQAGLPQIIQN_ 0 0 0 ENSG00000203867|ENST00000369519|RBM20 ENSG00000203867|ENST00000369519|RBM20 ENSG00000203867|ENST00000369519|RBM20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8289794921875 2 589.830037 1177.64552 0.6625 0.00039076 -0.38873 -0.00022929 0.27376 0.00016147 589.8296532077237 47.255 0.22253 46.903 46.798 47.02 -0.35261 25 10 3 0 0 0 0.65846 1 25338 25338 8.1555 1.9497 1 5476000 47061 10228 31607 32350 55040 55040 0.06380488426111697 PQAQRRHVPA 10 Unmodified _PQAQRRHVPA_ 0 0 0 REV__ENST00000372583.5_1_1:42048930-42049206:-|nuORF REV__ENST00000372583.5_1_1:42048930-42049206:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2202758789062 3 387.219617 1158.63702 1.0545 0.00040834 -0.40558 -0.00015705 0.64896 0.00025129 387.21948681328365 18.293 0.31633 15.672 15.548 15.864 -2.6215 46 25 3 0 0 0 0.70895 1 9705 9705 1.9064 0.1641 1 7160600 + 47062 26118 31608 32351 55041 55041 0.06404979300123159 PQAVERHVL 9 Unmodified _PQAVERHVL_ 0 0 0 nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2;ENSG00000189350|ENST00000379558|TOGARAM2 nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2 nc|ENSG00000189350|Q6ZUX3-2|TOGARAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2465209960938 2 524.79854 1047.58253 -0.18698 -9.8125E-05 -1.215 -0.00063765 -1.402 -0.00073578 524.7973878623837 16.912 0.03212 16.912 16.891 16.923 0 9 6 2 0 0 0 0.53557 1 8280 8280 5.2969 1.7004 1 481840 47063 9745 31609 32352 55042 55042 0.06063967428713113 PQAVPEPQP 9 Unmodified _PQAVPEPQP_ 0 0 0 REV__ENSG00000100941|ENST00000216832|PNN REV__ENSG00000100941|ENST00000216832|PNN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.716064453125 2 481.750724 961.486896 -0.28106 -0.0001354 2.815 0.0013561 2.534 0.0012207 481.7520831858127 19.412 0.30997 19.412 19.248 19.558 0 39 27 2 0 0 0 0.18521 1 9682 9682 16.942 1.0951 1 722750 + 47064 18119 31610 32353 55043 55043 0.0046119451779986775 PQAVPPPT 8 Unmodified _PQAVPPPT_ 0 0 0 REV__ENSG00000132024|ENST00000318003|CC2D1A REV__ENSG00000132024|ENST00000318003|CC2D1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.4442749023438 1 806.44068 805.433404 0.065688 5.2974E-05 1.7287 0.0013941 1.7944 0.0014471 806.4421060860556 72.499 0.35711 72.499 72.28 72.637 0 22 13 2 0 0 0 0.75262 1 40409 40409 12.532 0 1 1030900 + 47065 19827 31611 32354 55044 55044 0.022904418059511045 PQCCCEECCN 10 Unmodified _PQCCCEECCN_ 0 0 0 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 REV__ENSG00000186860|ENST00000334202|KRTAP17-1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.1558837890625 2 566.155248 1130.29594 NaN NaN NaN NaN NaN NaN NaN 14.857 1 14.863 14.363 15.363 0.0057774 0 0 0 1.0061 1 7383 7383 0 0 1 + 47066 23602 31612 32355 55045 55045 -0.26399405505594586 PQCPPRLEMQ 10 Unmodified _PQCPPRLEMQ_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 599.3167724609375 2 599.789001 1197.56345 -0.2473 -0.00014833 -1.4798 -0.00088755 -1.7271 -0.0010359 599.7880971097819 39.836 0.30799 35.307 35.078 35.386 -4.5294 46 19 3 0 0 0 0.23634 1 23641 23641 6.7232 0.99131 1 17930000 47067 9779 31613 32356 55046 55046 -0.02743073248871042 PQCQDNQVF 9 Unmodified _PQCQDNQVF_ 0 0 0 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7368774414062 2 539.734748 1077.45494 0.13467 7.2688E-05 3.4117 0.0018414 3.5464 0.0019141 539.7368335904704 68.792 0.24037 68.312 68.18 68.421 -0.48071 26 10 3 0 0 0 0.5029 1 37589 37589 7.2892 1.5288 1 1778100 + 47068 19038 31614 32357 55047 55047 -0.08068541227657988 PQCQDNQVF 9 Unmodified _PQCQDNQVF_ 0 0 0 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 REV__nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.734748 1077.45494 0.50252 0.00027123 4.1858 0.0022592 4.6883 0.0025304 539.7369420870167 68.342 0.17606 68.368 68.282 68.458 0.025146 0.02795 0.00010672 NaN 7.2892 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1261500 + 47069 19038 31614 32357 -0.08068541227657988 PQCSSKQCCL 10 Unmodified _PQCSSKQCCL_ 0 0 0 REV__ENSG00000187766|ENST00000334662|KRTAP10-8 REV__ENSG00000187766|ENST00000334662|KRTAP10-8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7340087890625 2 548.732837 1095.45112 NaN NaN NaN NaN NaN NaN NaN 65.325 1 64.841 64.341 65.341 -0.48428 0 0 0 0.97592 1 35651 35651 3.2813 0.39209 1 + 47070 23659 31615 32358 55048 55048 -0.09278670317371507 PQDFRQKNY 9 Unmodified _PQDFRQKNY_ 0 0 0 REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2923583984375 2 598.296362 1194.57817 0.6544 0.00039153 -2.5801 -0.0015437 -1.9257 -0.0011522 598.2938123082032 21.191 0.142 18.498 18.384 18.526 -2.693 10 7 2 0 0 0 0.41742 1 11338 11338 11.64 0.81637 1 2141900 + 47071 19872 31616 32359 55049 55049 -0.011335417848385987 PQDLAAYYYY 10 Unmodified _PQDLAAYYYY_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MSMS AL20221201_MKP_PDAC_01 4 633.7902221679688 2 633.787504 1265.56045 NaN NaN NaN NaN NaN NaN NaN 43.598 1 38.833 38.333 39.333 -4.7648 0 0 0 0.78689 1 26499 26499 14.838 2.5976 1 47072 5929 31617 32360 55050 55050 -0.0617030183038878 PQDMVVQLL 9 Unmodified _PQDMVVQLL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7840576171875 2 521.78371 1041.55287 0.6351 0.00033139 1.64 0.00085573 2.2751 0.0011871 521.7838248006218 72.89 0.5914 72.89 72.461 73.052 0 36 27 2 0 0 0 0.42049 1 40569 40569 11.495 2.7493 1 655780 47073 8124 31618 32361 55051 55051 0.0337526736836935 PQDMVVQLL 9 Unmodified _PQDMVVQLL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7839965820312 2 521.78371 1041.55287 0.59482 0.00031037 0.11509 6.0052E-05 0.70991 0.00037042 521.7838791376637 73.381 0.34921 72.905 72.717 73.066 -0.47588 38 15 3 0 0 0 0.4887 1 40231 40231 8.1555 1.4324 1 2468900 47074 8124 31618 32361 55052 55052 0.0337526736836935 PQDRVVTCKL 10 Unmodified _PQDRVVTCKL_ 0 0 0 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 ENSG00000260734|ENST00000561754|TLE7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2901000976562 2 579.818615 1157.62268 0.73929 0.00042866 -0.12186 -7.0657E-05 0.61743 0.000358 579.8182048772818 54.811 0.28135 54.744 54.579 54.861 -0.06694 32 13 3 0 0 0 0.22636 1 29739 29739 17.113 1.2657 1 7080400 47075 10830 31619 32362 55053 55053 0.050171460369710985 PQDVILKF 8 Unmodified _PQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2809143066406 2 480.28166 958.548768 0.22932 0.00011014 -0.63056 -0.00030285 -0.40124 -0.00019271 480.28142260704004 73.198 0.29404 73.24 73.108 73.402 0.041725 22 13 2 0 0 0 0.078938 1 40344 40344 110.67 60.742 1 3550900 47076 3769 31620 32363 55054 55054 0.0678354593695758 PQDVILKF 8 Unmodified _PQDVILKF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.28166 958.548768 0.80975 0.00038891 -0.57034 -0.00027392 0.23941 0.00011499 480.2816652771854 73.732 0.22861 73.256 73.166 73.394 -0.47588 0.008057 3.5549E-05 NaN 110.67 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1198000 47077 3769 31620 32363 0.0678354593695758 PQDYQLQAMDH 11 Unmodified _PQDYQLQAMDH_ 0 0 0 ENST00000502262.4_1_5:96158677-96209374:-|nuORF ENST00000502262.4_1_5:96158677-96209374:-|nuORF ENST00000502262.4_1_5:96158677-96209374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.29541015625 2 673.295701 1344.57685 -0.5607 -0.00037751 0.64965 0.0004374 0.088949 5.9889E-05 673.2963204471213 25.642 0.3924 25.642 25.427 25.819 0 64 18 5 0 0 0 0.65096 1 13098 13098 15.248 6.5031 1 19971000 47078 14450 31621 32364 55055 55055 -0.08165543935933783 PQDYTRISSLN 11 Unmodified _PQDYTRISSLN_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.32568359375 2 647.325316 1292.63608 0.44429 0.0002876 0.31061 0.00020106 0.7549 0.00048867 647.3257216148147 47.974 0.31593 47.621 47.474 47.79 -0.3526 39 15 3 0 0 0 0.5229 1 25705 25705 15.248 0 1 10463000 47079 1188 31622 32365 55056 55056 0.0014667534990167042 PQEFTTHK 8 Unmodified _PQEFTTHK_ 0 0 0 REV__ENSG00000112742|ENST00000369798|TTK REV__ENSG00000112742|ENST00000369798|TTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2493591308594 2 494.248349 986.482145 0.83035 0.0004104 1.996 0.00098653 2.8264 0.0013969 494.2492946426985 68.876 0.21118 68.901 68.793 69.004 0.025146 16 9 2 0 0 0 0.80383 1 37850 37850 4.3292 1.7518 1 1554900 + 47080 18834 31623 32366 55057 55057 -0.011636896249569872 PQELFRDYH 9 Unmodified _PQELFRDYH_ 0 0 0 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 ENSG00000214029|ENST00000537226|ZNF891 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.294677734375 2 602.790912 1203.56727 0.72748 0.00043852 -0.11908 -7.1779E-05 0.6084 0.00036674 602.7893166260093 34.078 0.53982 30.092 29.676 30.216 -3.9853 61 29 3 0 0 0 0.45045 1 19426 19426 10.074 0 1 9421200 47081 10477 31624 32367 55058 55058 -0.026369441591668874 PQEVIVLY 8 Unmodified _PQEVIVLY_ 0 0 0 REV__ENST00000467116.5_1_10:104155716-104158713:+|nuORF REV__ENST00000467116.5_1_10:104155716-104158713:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2746276855469 2 480.773668 959.532783 0.55575 0.00026719 -0.38324 -0.00018425 0.17252 8.2941E-05 480.77312596889254 73.011 0.13114 73.011 72.945 73.076 0 8 5 2 0 0 0 8.7369 1 40615 40615 4.3292 0 1 278960 + 47082 17603 31625 32368 55059 55059 0.051398397000298246 PQFEETVAF 9 Unmodified _PQFEETVAF_ 0 0 0 REV__nc|ENSG00000150093|P05556-2|ITGB1 REV__nc|ENSG00000150093|P05556-2|ITGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2540893554688 2 534.25584 1066.49713 NaN NaN NaN NaN NaN NaN NaN 40.07 1 40.075 39.575 40.575 0.0050545 0 0 0 0.82396 1 21359 21359 4.756 0.81161 1 + 47083 21018 31626 32369 55060 55060 -0.03346242547627298 PQFHEDSL 8 Unmodified _PQFHEDSL_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7245788574219 2 486.724707 971.43486 0.4059 0.00019756 -1.0039 -0.0004886 -0.59797 -0.00029105 486.7242491175223 58.075 0.75067 58.075 57.716 58.467 0 54 30 2 0 0 0 0.6895 1 32453 32453 18.135 0 1 4870900 + 47084 22466 31627 32370 55061 55061 -0.051999688959540435 PQFLLDDCF 9 Unmodified _PQFLLDDCF_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5044555664062 3 366.503921 1096.48993 1.3898 0.00050938 1.4178 0.00051963 2.8076 0.001029 366.5042616793441 100.7 0.12509 94.52 94.459 94.584 -6.1757 12 8 2 0 0 0 0.41742 1 67439 67439 11.495 5.2604 1 17226000 47085 678 31628 32371 55062 55062 -0.05445298419704159 PQFTFTSEPH 10 Unmodified _PQFTFTSEPH_ 0 0 0 nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1 nc|ENSG00000173531|P26927|MST1 nc|ENSG00000173531|P26927|MST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7784423828125 2 595.77747 1189.54039 0.70184 0.00041814 -1.9163 -0.0011417 -1.2145 -0.00072357 595.7765986413913 71.764 0.30194 65.588 65.462 65.764 -6.1757 28 16 2 0 0 0 0.35903 1 46919 46919 24.021 4.5816 1 39913000 47086 8334 31629 32372 55063 55063 -0.046800527703453554 PQGAEYRFR 9 Unmodified _PQGAEYRFR_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.787109375 2 562.285797 1122.55704 -0.42053 -0.00023646 0.35933 0.00020205 -0.061196 -3.4409E-05 562.2860537725941 27.568 0.23081 27.568 27.449 27.679 0 23 10 3 0 0 0 0.34134 1 14190 14190 21.747 6.4982 1 3939500 47087 6400 31630 32373 55064 55064 0.0006649290628502058 PQGHQQMSF 9 Unmodified _PQGHQQMSF_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.237548828125 2 530.237458 1058.46036 0.00058511 3.1025E-07 -1.4696 -0.00077922 -1.469 -0.00077891 530.2367735081376 54.741 0.31618 54.274 54.124 54.44 -0.46664 25 15 2 0 0 0 0.45045 1 29657 29657 10.074 0 1 3544600 + 47088 22553 31631 32374 55065 55065 -0.0665281764518113 PQGPLGPF 8 Unmodified _PQGPLGPF_ 0 0 0 REV__ENSG00000187498|ENST00000375820|COL4A1 REV__ENSG00000187498|ENST00000375820|COL4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.7193603515625 2 406.718696 811.422839 1.6851 0.00068535 0.060521 2.4615E-05 1.7456 0.00070997 406.7185892004059 41.73 0.35386 37.122 36.923 37.277 -4.6079 44 22 3 0 0 0 0.72953 1 25038 25038 14.582 0 1 13896000 + 47089 23636 31632 32375 55066 55066 0.009584591515249485 PQGRSGGV 8 Unmodified _PQGRSGGV_ 0 0 0 REV__ENST00000495878.5_1_11:72396416-72396572:-|nuORF REV__ENST00000495878.5_1_11:72396416-72396572:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2018737792969 2 379.201202 756.387851 NaN NaN NaN NaN NaN NaN NaN 40.286 1 39.989 39.489 40.489 -0.29716 0 0 0 0.97444 1 21290 21290 2.5775 0 1 + 47090 27955 31633 32376 55067 55067 -8.783656426203379E-05 PQHCLETFI 9 Unmodified _PQHCLETFI_ 0 0 0 REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|31|1|anti-sense REV__L1MB8_dup3477|chr3:193839654-193840532:-|2.16136861990194|0.3003449133866926|2.85|174.0|31|1|anti-sense MSMS AL20221201_MKP_PDAC_01 4 363.1799926757812 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 78.501 1 72.325 71.825 72.825 -6.1757 0 0 0 0.82396 1 51386 51386 2.7352 0 1 + 47091 29403 31634 32377 55068 55068 -0.022981898084935892 PQHTQLNLL 9 Unmodified _PQHTQLNLL_ 0 0 0 REV__ENST00000404008.6_1_7:6150774-6150897:+|nuORF REV__ENST00000404008.6_1_7:6150774-6150897:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2987670898438 2 532.298373 1062.58219 -0.0016501 -8.7837E-07 0.6542 0.00034823 0.65255 0.00034735 532.2987017488572 29.804 0.35487 29.834 29.693 30.047 0.030106 22 13 2 0 0 0 0.094149 1 15571 15571 34.402 3.7652 1 1848000 + 47092 26636 31635 32378 55069 55069 0.053405477088290354 PQHVSMTKR 9 Unmodified _PQHVSMTKR_ 0 0 0 ENST00000567535.5_1_15:75287957-75305364:+|nuORF;ENST00000565923.5_1_15:75287957-75310150:+|nuORF;ENSG00000198794|ENST00000425597|SCAMP5;nc|ENSG00000198794|Q8TAC9-2|SCAMP5 ENST00000567535.5_1_15:75287957-75305364:+|nuORF ENST00000567535.5_1_15:75287957-75305364:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.9173278808594 3 361.862442 1082.5655 0.92715 0.0003355 0.34468 0.00012473 1.2718 0.00046023 361.86285872062257 16.854 0.1056 14.297 14.25 14.356 -2.557 23 16 2 0 0 0 0.21822 1 8785 8785 0.96228 0 1 2620200 47093 15437 31636 32379 55070 55070 0.02751723551273244 PQIRSRSL 8 Unmodified _PQIRSRSL_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MSMS AL20221201_MKP_PDAC_01 4 478.7860107421875 2 478.785433 955.556313 NaN NaN NaN NaN NaN NaN NaN 23.156 1 20.378 19.878 20.878 -2.7784 0 0 0 0.5695 1 12511 12511 36.127 3.8215 1 47094 1421 31637 32380 55071 55071 0.07675698257230579 PQITPSYYT 9 Unmodified _PQITPSYYT_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000482902.5_1_X:153061851-153062064:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2896118164062 2 535.263665 1068.51278 1.0295 0.00055105 -0.44669 -0.0002391 0.5828 0.00031195 535.2636324775491 59.297 0.3472 53.222 53.03 53.377 -6.0745 53 19 3 0 0 0 0.19891 1 38173 38173 11.64 4.9171 1 85657000 47095 8928 31638 32381 55072 55072 -0.018739560305675695 PQIWPPGLPP 10 Unmodified _PQIWPPGLPP_ 0 0 0 ENST00000360202.9_1_19:36357302-36357455:+|nuORF ENST00000360202.9_1_19:36357302-36357455:+|nuORF ENST00000360202.9_1_19:36357302-36357455:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8749084472656 3 367.874565 1100.60187 -0.46044 -0.00016938 0.40056 0.00014735 -0.059882 -2.2029E-05 367.87469248607925 19.813 0.31554 19.841 19.691 20.006 0.028355 34 19 2 0 0 0 0.72196 1 10084 10084 0.15932 0 1 444190 47096 12159 31639 32382 55073 55073 0.05558923719604536 PQKDNPPSL 9 Unmodified _PQKDNPPSL_ 0 0 0 nc|ENSG00000137843|Q9NQU5-2|PAK6;ENSG00000137843|ENST00000560346|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 nc|ENSG00000137843|Q9NQU5-2|PAK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2650756835938 2 498.261456 994.50836 0.33505 0.00016694 3.2652 0.0016269 3.6002 0.0017938 498.2639354747266 92.215 0.30988 91.734 91.57 91.88 -0.48092 22 13 2 0 0 0 0.49272 2 50364 50364;50456 7.9102 0 1 462200 47097 4982 31640 32383 55074;55075 55074 0.010885795465128467 PQKGATLI 8 Unmodified _PQKGATLI_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2533569335938 2 414.252903 826.491253 0.014235 5.8967E-06 -0.29363 -0.00012164 -0.27939 -0.00011574 414.2527574023563 51.677 0.33965 51.243 51.079 51.418 -0.43367 41 17 3 0 0 0 0.58902 1 27825 27825 26.884 0 1 18081000 + 47098 23851 31641 32384 55076 55076 0.07106703731381003 PQKGATLI 8 Unmodified _PQKGATLI_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2520751953125 2 414.252903 826.491253 -0.34105 -0.00014128 -0.16951 -7.0221E-05 -0.51056 -0.0002115 414.2529681598112 51.31 0.33412 51.256 51.047 51.381 -0.053871 37 16 3 0 0 0 0.58902 1 27718 27718 26.884 0 1 6013400 + 47099 23851 31641 32384 55077 55077 0.07106703731381003 PQKGATLI 8 Unmodified _PQKGATLI_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2530517578125 2 414.252903 826.491253 0.49785 0.00020624 0.5076 0.00021027 1.0055 0.00041651 414.2531986898397 52.703 0.25999 52.639 52.522 52.782 -0.063423 25 12 3 0 0 0 0.58902 1 28549 28549 26.884 0 1 3936200 + 47100 23851 31641 32384 55078 55078 0.07106703731381003 PQKGATLI 8 Unmodified _PQKGATLI_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.88134765625 2 414.252903 826.491253 -0.34105 -0.00014128 -0.16951 -7.0221E-05 -0.51056 -0.0002115 414.2529681598112 51.31 0.33412 51.256 51.047 51.381 -0.053871 37 16 3 0 0 0 8.7369 1 27806 27806 14.838 0 1 6013400 + 47101 23851 31641 32384 55079 55079 0.07106703731381003 PQKGATLI 8 Unmodified _PQKGATLI_ 0 0 0 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 414.252903 826.491253 0.014235 5.8967E-06 -0.29363 -0.00012164 -0.27939 -0.00011574 414.2527574023563 51.677 0.33965 51.243 51.079 51.418 -0.43367 -0.0065562 -3.9121E-05 NaN 26.884 41 17 3 NaN NaN NaN NaN 0 NaN NaN 0 18081000 + 47102 23851 31641 32384 0.07106703731381003 PQKPWWEDEW 10 Unmodified _PQKPWWEDEW_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.54736328125 3 467.547177 1399.6197 NaN NaN NaN NaN NaN NaN NaN 24.56 1 24.56 24.06 25.06 0 0 0 0 0.99091 1 12556 12556 0.69767 0.24315 1 47103 9095 31642 32385 55080 55080 -0.06412405816172395 PQKQREITL 9 Unmodified _PQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8243408203125 2 556.824755 1111.63496 -0.38917 -0.0002167 0.36945 0.00020572 -0.019726 -1.0984E-05 556.8248646318783 30.204 0.26265 30.204 30.1 30.363 0 19 12 2 0 0 0 0.047714 1 15706 15706 45.74 19.472 1 852520 47104 7383 31643 32386 55081 55081 0.0836050577165679 PQKQREITL 9 Unmodified _PQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8253784179688 2 556.824755 1111.63496 0.85942 0.00047854 0.66527 0.00037044 1.5247 0.00084898 556.8251797254261 30.187 0.38817 30.107 29.92 30.308 -0.080429 22 14 2 0 0 0 0.0099157 1 15637 15637 80.676 29.046 1 2472600 47105 7383 31643 32386 55082 55082 0.0836050577165679 PQKQREITL 9 Unmodified _PQKQREITL_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8248291015625 2 556.824755 1111.63496 0.83377 0.00046427 -0.28129 -0.00015663 0.55249 0.00030764 556.8245825293086 33.228 0.40181 29.371 29.129 29.531 -3.8562 32 25 2 0 0 0 0.00010239 2 18941 18941;19078 152.89 70.357 1 21553000 47106 7383 31643 32386 55083;55084 55083 0.0836050577165679 PQLHHVRGL 9 Unmodified _PQLHHVRGL_ 0 0 0 REV__ENST00000374431.7_1_9:113704431-113734470:-|nuORF REV__ENST00000374431.7_1_9:113704431-113734470:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8067626953125 2 528.8067 1055.59885 0.42564 0.00022508 -0.85005 -0.00044951 -0.42442 -0.00022443 528.806242859237 49.225 0.34906 48.854 48.635 48.984 -0.37172 37 16 3 0 0 0 0.30562 1 26505 26505 16.942 0 1 4676800 + 47107 26179 31644 32387 55085 55085 0.0732709338544737 PQLLYKAA 8 Unmodified _PQLLYKAA_ 0 0 0 REV__ENSG00000103047|ENST00000261778|TANGO6 REV__ENSG00000103047|ENST00000261778|TANGO6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2685241699219 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 104.52 1 104.47 103.97 104.97 -0.048737 0 0 0 0.97444 1 58035 58035 0.69038 0 1 + 47108 18280 31645 32388 55086 55086 0.06739276765461 PQLNLVEIIWP 11 Unmodified _PQLNLVEIIWP_ 0 0 0 REV__nc|ENSG00000080839|P28749-2|RBL1 REV__nc|ENSG00000080839|P28749-2|RBL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 440.9232177734375 3 441.255334 1320.74417 0.93807 0.00041393 1.6472 0.00072683 2.5852 0.0011408 441.2560561814111 75.607 0.38087 69.431 69.253 69.634 -6.1757 28 20 2 0 0 0 0.30403 1 49342 49342 2.6312 0 1 8219400 + 47109 17676 31646 32389 55087 55087 0.09663091671131951 PQLQYYRAEEY 11 Unmodified _PQLQYYRAEEY_ 0 0 0 REV__nc|ENSG00000153885|Q96SI1-2|KCTD15 REV__nc|ENSG00000153885|Q96SI1-2|KCTD15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 730.3489379882812 2 730.346249 1458.67794 0.9911 0.00072385 2.2385 0.0016349 3.2296 0.0023587 730.3473631674767 53.572 0.33011 47.768 47.628 47.958 -5.8042 27 20 2 0 0 0 0.65846 1 33823 33823 8.1555 0.54658 1 24749000 + 47110 21192 31647 32390 55088 55088 -0.03304768961584159 PQLRCCIS 8 Unmodified _PQLRCCIS_ 0 0 0 REV__ENST00000573440.1_1_16:680894-681299:+|nuORF REV__ENST00000573440.1_1_16:680894-681299:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2284545898438 2 460.228048 918.441542 0.88655 0.00040802 0.97259 0.00044761 1.8591 0.00085563 460.22850161874544 99.185 0.12619 93.009 92.94 93.066 -6.1757 15 6 3 0 0 0 0.42423 1 65974 65974 42.095 0 1 60754000 + 47111 28997 31648 32391 55089 55089 -0.020940705406019333 PQLRCPGRPR 10 Unmodified _PQLRCPGRPR_ 0 0 0 ENST00000376509.4_1_X:48776104-48776263:-|nuORF ENST00000376509.4_1_X:48776104-48776263:-|nuORF ENST00000376509.4_1_X:48776104-48776263:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2974853515625 2 590.330016 1178.64548 1.0271 0.0006063 -1.2752 -0.0007528 -0.24817 -0.0001465 590.3293774378201 66.368 0.33823 66.377 66.202 66.54 0.0095596 40 16 3 0 0 0 0.23325 1 36399 36399 10.074 10.074 1 8738000 47112 12496 31649 32392 55090 55090 0.06330209945076604 PQLRRARTS 9 Unmodified _PQLRRARTS_ 0 0 0 REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF REV__ENST00000302904.8_1_17:42294008-42298982:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8664245605469 3 362.215984 1083.62612 NaN NaN NaN NaN NaN NaN NaN 1.9415 1 -0.54049 -1.0405 -0.040485 -2.482 0 0 0 0.85525 1 996 996 0.86438 0 1 + 47113 25345 31650 32393 55091 55091 0.08765576925839014 PQLSSLDCWQM 11 Unmodified _PQLSSLDCWQM_ 0 0 0 REV__nc|ENSG00000183878|O14607-2|UTY REV__nc|ENSG00000183878|O14607-2|UTY MSMS AL20221201_MKP_PDAC_01 4 654.29345703125 2 654.291573 1306.56859 NaN NaN NaN NaN NaN NaN NaN 100.05 1 93.878 93.378 94.378 -6.1757 0 0 0 0.39541 1 66817 66817 28.495 17 1 + 47114 29844 31651 32394 55092 55092 -0.07242814176902357 PQLVFFYGI 9 Unmodified _PQLVFFYGI_ 0 0 0 REV__ENST00000464589.1_1_21:28211878-28212356:-|nuORF REV__ENST00000464589.1_1_21:28211878-28212356:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8684692382812 3 361.867299 1082.58007 NaN NaN NaN NaN NaN NaN NaN 1.7719 1 -0.7101 -1.2101 -0.2101 -2.482 0 0 0 0.85798 1 914 914 0.23584 0 1 + 47115 21243 31652 32395 55093 55093 0.042081189710415856 PQLYLHAHV 9 Unmodified _PQLYLHAHV_ 0 0 0 REV__ENSG00000115464|ENST00000398571|USP34 REV__ENSG00000115464|ENST00000398571|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2010803222656 3 359.866181 1076.57671 -0.57938 -0.0002085 -0.43656 -0.0001571 -1.0159 -0.0003656 360.20125160142453 18.896 0.19055 18.919 18.801 18.992 0.023106 22 17 2 0 0 0 0.53666 1 9500 9500 2.9952 0 1 1086600 + 47116 18983 31653 32396 55094 55094 0.04148868917036452 PQLYPLPYL 9 Unmodified _PQLYPLPYL_ 0 0 0 REV__ENSG00000112659|ENST00000252050|CUL9 REV__ENSG00000112659|ENST00000252050|CUL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3116455078125 2 552.310418 1102.60628 NaN NaN NaN NaN NaN NaN NaN 79.956 1 80.013 79.513 80.513 0.057587 0 0 0 0.18753 1 44183 44183 32.305 0 1 + 47117 18828 31654 32397 55095 55095 0.059083881425067375 PQMCKSFTSL 10 Unmodified _PQMCKSFTSL_ 0 0 0 REV__ENST00000481639.1_1_3:169890418-169899526:-|nuORF REV__ENST00000481639.1_1_3:169890418-169899526:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7769775390625 2 571.272652 1140.53075 0.3545 0.00020252 2.4057 0.0013743 2.7602 0.0015768 571.2732630294264 77.64 0.11016 77.64 77.602 77.712 0 8 5 2 0 0 0 0.66569 1 43192 43192 6.7232 0 1 576080 + 47118 27698 31655 32398 55096 55096 -0.03389280371698078 PQMCKSFTSL 10 Unmodified _PQMCKSFTSL_ 0 0 0 REV__ENST00000481639.1_1_3:169890418-169899526:-|nuORF REV__ENST00000481639.1_1_3:169890418-169899526:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.272652 1140.53075 0.3545 0.00020252 2.4057 0.0013743 2.7602 0.0015768 571.2732630294264 77.64 0.11016 77.64 77.602 77.712 0 0 0 NaN 6.7232 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 576080 + 47119 27698 31655 32398 -0.03389280371698078 PQMLTPQQM 9 Unmodified _PQMLTPQQM_ 0 0 0 nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 nc|ENSG00000137166|Q8IVH2-3|FOXP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2593994140625 2 537.259545 1072.50454 -0.078736 -4.2301E-05 -2.9407 -0.0015799 -3.0194 -0.0016222 537.2583251082156 43.863 0.24055 43.547 43.421 43.661 -0.31585 26 12 3 0 0 0 0.1773 1 23334 23334 25.399 7.253 1 80344000 47120 4906 31656 32399 55097 55097 -0.028815495432127136 PQMRIVYQSS 10 Unmodified _PQMRIVYQSS_ 0 0 0 REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5415649414062 3 403.541257 1207.60194 0.99229 0.00040043 0.018242 7.3615E-06 1.0105 0.00040779 403.541318740474 30.302 0.37987 26.805 26.612 26.992 -3.497 54 18 4 0 0 0 0.57893 1 17037 17037 10.899 5.4962 1 104920000 + 47121 22407 31657 32400 55098 55098 0.006445556572998612 PQMSAKDYQ 9 Unmodified _PQMSAKDYQ_ 0 0 0 ENST00000519325.1_1_5:153476744-153529428:+|nuORF;ENST00000521527.5_1_5:153476717-153514692:+|nuORF ENST00000519325.1_1_5:153476744-153529428:+|nuORF ENST00000519325.1_1_5:153476744-153529428:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.5616760253906 3 356.499058 1066.47534 1.3664 0.00048713 -1.9598 -0.00069868 -0.59342 -0.00021155 356.4985487978569 22.287 0.28249 19.553 19.431 19.714 -2.7348 21 14 2 0 0 0 0.21822 1 11941 11941 0.96228 0.33545 1 3033400 47122 14704 31658 32401 55099 55099 -0.05523370567857455 PQMTSLPRREE 11 Unmodified _PQMTSLPRREE_ 0 0 0 ENST00000338754.8_2_22:26922169-26924190:-|nuORF ENST00000338754.8_2_22:26922169-26924190:-|nuORF ENST00000338754.8_2_22:26922169-26924190:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.3431396484375 2 672.340443 1342.66633 0.90863 0.00061091 2.9309 0.0019706 3.8396 0.0025815 672.8438940776707 60.919 0.32714 54.771 54.574 54.901 -6.1478 25 17 2 0 0 0 0.42108 1 39208 39208 20.415 2.0414 1 22779000 47123 11941 31659 32402 55100 55100 0.008707107434702266 PQNENLTSK 9 Unmodified _PQNENLTSK_ 0 0 0 REV__ENSG00000081026|ENST00000307546|MAGI3 REV__ENSG00000081026|ENST00000307546|MAGI3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2600708007812 2 515.76182 1029.50909 -0.23915 -0.00012334 2.1562 0.0011121 1.917 0.00098873 516.2653612772438 20.54 0.06702 20.54 20.495 20.562 0 8 6 2 0 0 0 0.21847 1 10335 10335 1.6526 0 1 420410 + 47124 17679 31660 32403 55101 55101 -0.00448625804438052 PQNKQMAF 8 Unmodified _PQNKQMAF_ 0 0 0 ENSG00000243978|ENST00000520821|RTL9 ENSG00000243978|ENST00000520821|RTL9 ENSG00000243978|ENST00000520821|RTL9 MSMS AL20221201_MKP_PDAC_01 4 482.2391052246094 2 482.23947 962.464386 NaN NaN NaN NaN NaN NaN NaN 38.209 1 33.84 33.34 34.34 -4.3689 0 0 0 0.93587 1 22508 22508 13.508 0.97634 1 47125 10720 31661 32404 55102 55102 -0.018347281514593305 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.27978515625 2 530.279118 1058.54368 0.2865 0.00015192 -1.0364 -0.00054959 -0.74991 -0.00039766 530.2785344996245 98.003 0.57388 97.76 97.561 98.135 -0.24277 69 23 5 0 0 0 0.0090851 2 53460 53460;53560 85.357 56.87 1 49394000 47126 10908 31662 32405 55103;55104 55103 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1059.022216796875 1 1059.55096 1058.54368 0.23121 0.00024497 -0.83107 -0.00088056 -0.59986 -0.00063558 1059.5496874134005 98.006 0.37002 97.764 97.6 97.97 -0.24277 36 15 4 0 0 0 0.023157 1 53499 53499 96.111 70.712 1 12886000 47127 10908 31662 32405 55105 55105 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2779541015625 2 530.279118 1058.54368 3.2103 0.0017023 -2.4878 -0.0013193 0.72243 0.00038309 530.2776471695428 97.654 0.46248 97.636 97.437 97.9 -0.018188 48 16 4 0 0 0 0.010818 2 54236 54236;54353 78.149 40.175 1 26869000 47128 10908 31662 32405 55106;55107 55106 0.016752420743159746 PQPDVFPLF 9 Unmodified _PQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2791137695312 2 530.279118 1058.54368 0.78261 0.000415 0.036081 1.9133E-05 0.81869 0.00043413 530.2790458367592 100.7 0.25257 94.52 94.418 94.67 -6.1757 58 17 5 0 0 0 0.024882 1 67383 67383 58.679 40.544 1 1215600000 47129 10908 31662 32405 55108 55108 0.016752420743159746 PQPGAGRF 8 Unmodified _PQPGAGRF_ 0 0 0 ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2203369140625 2 415.219395 828.424236 0.5959 0.00024743 0.9551 0.00039658 1.551 0.00064401 415.2196985420702 46.636 0.21573 46.3 46.169 46.385 -0.33664 19 10 2 0 0 0 0.79669 1 24961 24961 8.5933 0 1 9678900 47130 14867 31663 32406 55109 55109 0.00316093240292048 PQPGAGRF 8 Unmodified _PQPGAGRF_ 0 0 0 ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2200317382812 2 415.219395 828.424236 -0.49214 -0.00020435 1.6024 0.00066534 1.1102 0.00046099 415.21999793040527 55.841 0.18061 55.772 55.685 55.866 -0.068737 16 9 2 0 0 0 0.80975 1 30339 30339 0.79363 0 1 8027500 47131 14867 31663 32406 55110 55110 0.00316093240292048 PQPGAGRF 8 Unmodified _PQPGAGRF_ 0 0 0 ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.7463684082031 2 415.219395 828.424236 0.20387 8.465E-05 1.0528 0.00043714 1.2567 0.00052179 415.2197409241993 54.97 0.27493 54.901 54.744 55.019 -0.068741 23 13 2 0 0 0 8.7369 1 29845 29845 0 0 1 4964000 47132 14867 31663 32406 55111 55111 0.00316093240292048 PQPGAGRF 8 Unmodified _PQPGAGRF_ 0 0 0 ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 415.219395 828.424236 0.56196 0.00023333 1.7979 0.0007465 2.3598 0.00097984 415.2199833789306 46.363 0.35855 46.363 46.164 46.523 0 0.04342 0.00031098 NaN 8.5933 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 14714000 47133 14867 31663 32406 0.00316093240292048 PQPGAGRF 8 Unmodified _PQPGAGRF_ 0 0 0 ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF ENST00000529074.1_1_1:109560211-109584588:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 415.219395 828.424236 0.73576 0.0003055 1.4312 0.00059428 2.167 0.00089978 415.21993808690075 46.329 0.58909 46.296 45.921 46.51 -0.033417 -0.023652 6.5279E-06 NaN 8.5933 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 74381000 47134 14867 31663 32406 0.00316093240292048 PQPHIRKRK 9 Unmodified _PQPHIRKRK_ 0 0 0 ENST00000414442.1_1_2:105052472-105122404:+|nuORF ENST00000414442.1_1_2:105052472-105122404:+|nuORF ENST00000414442.1_1_2:105052472-105122404:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.364501953125 2 580.362173 1158.70979 1.5724 0.00091254 1.1613 0.00067396 2.7336 0.0015865 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.61381 2 70889 70889;70993 0.52476 0.066424 1 10927000 47135 13011 31664 32407 55112;55113 55112 0.13678733093524897 PQPHRLGLH 9 Unmodified _PQPHRLGLH_ 0 0 0 REV__ARID1A|p.Q594Sfs*25|1|0.13|ENSG00000117713|chr1:26731579-26731579|C/-|frameshift_variant REV__ARID1A|p.Q594Sfs*25|1|0.13|ENSG00000117713|chr1:26731579-26731579|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.2025451660156 3 352.201675 1053.5832 -0.59023 -0.00020788 1.3432 0.00047307 0.75296 0.00026519 352.2021618834988 14.858 0.060326 14.827 14.797 14.857 -0.030868 28 16 2 0 0 0 0.54444 1 7258 7258 2.7352 0 1 403960 + 47136 16731 31665 32408 55114 55114 0.05854806868410378 PQPPVGGW 8 Unmodified _PQPPVGGW_ 0 0 0 REV__ENST00000555704.5_1_14:50159830-50218487:+|nuORF REV__ENST00000555704.5_1_14:50159830-50218487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2163391113281 2 419.216321 836.418088 0.60249 0.00025257 -0.43457 -0.00018218 0.16792 7.0395E-05 419.2161464627307 28.943 0.15563 28.881 28.81 28.966 -0.06216 11 6 2 0 0 0 0.5953 1 14954 14954 26.341 8.2063 1 2543500 + 47137 28773 31666 32409 55115 55115 -0.006664249912319065 PQPQAPDCLE 10 Unmodified _PQPQAPDCLE_ 0 0 0 REV__ENST00000395756.5_1_17:17718546-17719313:-|nuORF REV__ENST00000395756.5_1_17:17718546-17719313:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.75341796875 2 549.250231 1096.48591 0.33475 0.00018386 3.5586 0.0019546 3.8934 0.0021384 549.7537520750027 98.03 0.26056 97.788 97.685 97.946 -0.24277 21 9 3 0 0 0 0.53722 1 53568 53568 14.405 1.3629 1 1948200 + 47138 26483 31667 32410 55116 55116 -0.05847387913422608 PQPSNWVQF 9 Unmodified _PQPSNWVQF_ 0 0 0 ENSG00000089818|ENST00000339754|NECAP1;ENST00000320802.6_1_7:37625105-37625180:-|nuORF ENSG00000089818|ENST00000339754|NECAP1 ENSG00000089818|ENST00000339754|NECAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7471923828125 2 551.769448 1101.52434 0.6867 0.0003789 0.60028 0.00033121 1.287 0.00071011 551.7694973660283 68.13 0.18591 67.647 67.538 67.724 -0.48218 12 8 2 0 0 0 0.18118 1 37212 37212 19.257 7.6167 1 1960000 47139 1538 31668 32411 55117 55117 -0.022357142165674304 PQPSNWVQF 9 Unmodified _PQPSNWVQF_ 0 0 0 ENSG00000089818|ENST00000339754|NECAP1;ENST00000320802.6_1_7:37625105-37625180:-|nuORF ENSG00000089818|ENST00000339754|NECAP1 ENSG00000089818|ENST00000339754|NECAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.769775390625 2 551.769448 1101.52434 0.85426 0.00047136 0.23562 0.00013001 1.0899 0.00060137 551.7696564290885 73.832 0.45872 67.656 67.445 67.903 -6.1757 33 22 2 0 0 0 0.028475 1 48353 48353 56.177 25.952 1 17110000 47140 1538 31668 32411 55118 55118 -0.022357142165674304 PQPSNWVQF 9 Unmodified _PQPSNWVQF_ 0 0 0 ENSG00000089818|ENST00000339754|NECAP1;ENST00000320802.6_1_7:37625105-37625180:-|nuORF ENSG00000089818|ENST00000339754|NECAP1 ENSG00000089818|ENST00000339754|NECAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.769448 1101.52434 0.31293 0.00017267 -0.069515 -3.8356E-05 0.24342 0.00013431 551.7687716172306 67.66 0.42319 67.678 67.553 67.976 0.018028 0.017411 -0.0003291 NaN 56.177 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 5565900 47141 1538 31668 32411 -0.022357142165674304 PQPTALIAL 9 Unmodified _PQPTALIAL_ 0 0 0 REV__nc|ENSG00000005381|P05164-3|MPO;REV__ENST00000580005.1_1_17:56357276-56358041:-|nuORF REV__ENST00000580005.1_1_17:56357276-56358041:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2821960449219 2 462.28166 922.548768 1.041 0.00048124 0.21577 9.9745E-05 1.2568 0.00058098 462.2816791798648 87.542 0.38733 81.367 81.182 81.57 -6.1757 36 20 2 0 0 0 0.094149 1 57834 57834 34.402 0 1 13655000 + 47142 16967;29055 31669 32412 55119 55119 0.0843954593693752 PQPVPPENGF 10 Unmodified _PQPVPPENGF_ 0 0 0 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2686767578125 2 541.269281 1080.52401 0.17829 9.6503E-05 0.62377 0.00033763 0.80206 0.00043413 541.2693961118734 98.003 0.34573 97.76 97.6 97.946 -0.24277 28 14 3 0 0 0 0.16361 1 53518 53518 38.176 2.0485 1 7667600 47143 643 31670 32413 55120 55120 -0.01303133936426093 PQPVPPENGF 10 Unmodified _PQPVPPENGF_ 0 0 0 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 ENSG00000039537|ENST00000337836|C6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.269281 1080.52401 3.2456 0.0017567 0.49986 0.00027056 3.7454 0.0020273 541.26912751716 97.696 0.24156 97.678 97.604 97.845 -0.018188 -0.041063 -0.00012694 NaN 38.176 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1310500 47144 643 31670 32413 -0.01303133936426093 PQPWAPLRF 9 Unmodified _PQPWAPLRF_ 0 0 0 ENST00000461013.5_1_5:131713711-131714174:+|nuORF ENST00000461013.5_1_5:131713711-131714174:+|nuORF ENST00000461013.5_1_5:131713711-131714174:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7510375976562 2 556.306001 1110.59745 0.45246 0.00025171 0.43799 0.00024365 0.89045 0.00049536 556.3062853344921 78.448 0.23666 78.448 78.359 78.595 0 16 11 2 0 0 0 0.21819 1 43572 43572 2.0598 0.21551 1 390550 47145 13650 31671 32414 55121 55121 0.04657459296709021 PQQIIEYNRM 10 Unmodified _PQQIIEYNRM_ 0 0 0 REV__ENSG00000101846|ENST00000674429|STS REV__ENSG00000101846|ENST00000674429|STS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.326904296875 2 646.326805 1290.63906 -0.029789 -1.9253E-05 -0.10497 -6.7845E-05 -0.13476 -8.7098E-05 646.3270568433919 88.199 0.19682 88.199 88.092 88.289 0 14 8 2 0 0 0 0.72247 1 48847 48847 0.40072 0 1 369380 + 47146 18196 31672 32415 55122 55122 0.0053622720304247196 PQQQPPPPY 9 Unmodified _PQQQPPPPY_ 0 0 0 REV__ENSG00000173473|ENST00000254480|SMARCC1 REV__ENSG00000173473|ENST00000254480|SMARCC1 MSMS AL20221201_MKP_PDAC_01 4 351.1805725097656 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 85.911 1 79.735 79.235 80.235 -6.1757 0 0 0 0.84564 1 56613 56613 1.0715 0.3738 1 + 47147 22732 31673 32416 55123 55123 -0.0097911659086094 PQQQRWRKLME 11 Unmodified _PQQQRWRKLME_ 0 0 0 REV__ENST00000473343.5_1_1:6521496-6523040:-|nuORF REV__ENST00000473343.5_1_1:6521496-6523040:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.6017761230469 3 500.60151 1498.7827 0.49405 0.00024732 0.90544 0.00045327 1.3995 0.00070059 500.60166280510873 99.715 0.19043 93.539 93.448 93.638 -6.1757 25 12 3 0 0 0 0.69316 1 66486 66486 2.2527 1.0379 1 76124000 + 47148 24346 31674 32417 55124 55124 0.053260740339965196 PQRAFLSS 8 Unmodified _PQRAFLSS_ 0 0 0 ENST00000412669.1_1_7:90226562-90226658:-|nuORF ENST00000412669.1_1_7:90226562-90226658:-|nuORF ENST00000412669.1_1_7:90226562-90226658:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2484130859375 2 453.245609 904.476666 NaN NaN NaN NaN NaN NaN NaN 103.28 1 103.18 102.68 103.68 -0.10458 0 0 0 0.97444 1 56335 56335 0.69038 0 1 47149 12989 31675 32418 55125 55125 0.020606315832424116 PQRCMPEF 8 Unmodified _PQRCMPEF_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.22607421875 2 504.225505 1006.43646 -1.0181 -0.00051337 1.0016 0.00050501 -0.016566 -8.3532E-06 504.2261557019762 16.932 0.070312 16.933 16.903 16.973 0.0010548 34 21 2 0 0 0 0.79783 1 8383 8383 7.9102 7.9102 1 458000 47150 4749 31676 32419 55126 55126 -0.06650374403193382 PQRCMTSI 8 Unmodified _PQRCMTSI_ 0 0 0 REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2260131835938 2 468.225505 934.436457 0.79225 0.00037095 0.13376 6.2631E-05 0.92602 0.00043358 468.2256640439035 80.949 0.44719 81.009 80.79 81.237 0.059929 41 17 3 0 0 0 0.50673 2 44719 44719;44829 34.102 34.102 1 3336000 + 47151 29285 31677 32420 55127;55128 55127 -0.033383744031993956 PQRCMTSI 8 Unmodified _PQRCMTSI_ 0 0 0 REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF REV__ENST00000604238.2_1_10:74322776-74385791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2279968261719 2 468.225505 934.436457 1.0996 0.00051486 0.57379 0.00026866 1.6734 0.00078352 468.22582433393285 95.277 0.46227 89.101 88.82 89.282 -6.1757 46 25 2 0 0 0 0.50673 2 62987 62987;63111 34.102 34.102 1 13340000 + 47152 29285 31677 32420 55129;55130 55129 -0.033383744031993956 PQRPRPTL 8 Unmodified _PQRPRPTL_ 0 0 0 ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 MSMS AL20221201_MKP_PDAC_01 4 482.7886047363281 2 482.787976 963.561398 NaN NaN NaN NaN NaN NaN NaN 22.029 1 19.294 18.794 19.794 -2.7348 0 0 0 0.92941 1 11833 11833 14.838 2.3067 1 47153 1200 31678 32421 55131 55131 0.07816002119852783 PQRRARWRRWW 11 Unmodified _PQRRARWRRWW_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3095703125 3 551.974781 1652.90251 0.62741 0.00034632 -1.6038 -0.00088524 -0.97635 -0.00053892 552.3086107994474 48.129 0.19752 47.776 47.652 47.85 -0.3526 23 9 3 0 0 0 0.74442 1 25807 25807 0.08335 0.08335 1 3840400 47154 12348 31679 32422 55132 55132 0.10217868213430847 PQRRLLWDF 9 Unmodified _PQRRLLWDF_ 0 0 0 ENST00000575722.1_1_18:76736994-76737210:-|nuORF ENST00000575722.1_1_18:76736994-76737210:-|nuORF ENST00000575722.1_1_18:76736994-76737210:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.3414306640625 2 615.840739 1229.66693 0.57843 0.00035622 0.72089 0.00044395 1.2993 0.00080018 615.8425050237807 101.92 0.29567 95.748 95.644 95.939 -6.1757 24 14 3 0 0 0 0.58865 1 68424 68424 2.0598 0.40713 1 4667800 47155 15517 31680 32423 55133 55133 0.06127918245442743 PQRVKIYPF 9 Unmodified _PQRVKIYPF_ 0 0 0 ENST00000215832.10_1_22:22160202-22160253:-|nuORF ENST00000215832.10_1_22:22160202-22160253:-|nuORF ENST00000215832.10_1_22:22160202-22160253:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.22607421875 3 383.225598 1146.65496 0.95719 0.00036682 0.12061 4.622E-05 1.0778 0.00041304 383.22552545399924 78.574 1.0068 72.399 72.126 73.132 -6.1757 109 59 3 0 0 0 0.21643 1 51515 51515 21.537 0 1 32050000 47156 10997 31681 32424 55134 55134 0.0875030150227758 PQSAHAAF 8 Unmodified _PQSAHAAF_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 828.4826049804688 1 828.399878 827.392602 1.1154 0.00092396 -3.714 -0.0030767 -2.5987 -0.0021527 828.396174891602 72.083 0.089645 65.907 65.83 65.919 -6.1757 7 4 2 0 0 0 8.7369 1 47117 47117 16.942 1.1741 1 7989200 47157 7454 31682 32425 55135 55135 -0.02799899513672699 PQSELILYL 9 Unmodified _PQSELILYL_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.3056640625 2 538.305332 1074.59611 0.54642 0.00029414 0.5809 0.0003127 1.1273 0.00060685 538.305486363067 73.037 0.38898 73.037 72.84 73.229 0 29 17 3 0 0 0 0.32235 1 40612 40612 16.149 3.9084 1 923170 47158 5400 31683 32426 55136 55136 0.06179780417301117 PQSLFTLF 8 Unmodified _PQSLFTLF_ 0 0 0 ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7613220214844 2 476.760561 951.506569 1.0926 0.00052089 1.5536 0.00074071 2.6462 0.0012616 476.7608984839058 94.773 0.86892 88.597 88.1 88.969 -6.1757 63 49 2 0 0 0 0.42423 2 62783 62783;62936 42.095 9.9776 1 7091400 47159 3317 31684 32427 55137;55138 55137 0.02887570528582728 PQSNCNCYRQ 10 Unmodified _PQSNCNCYRQ_ 0 0 0 REV__ENST00000547903.1_1_14:105848293-105857603:+|nuORF REV__ENST00000547903.1_1_14:105848293-105857603:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8337707519531 3 404.834335 1211.48118 NaN NaN NaN NaN NaN NaN NaN 72.651 1 72.175 71.675 72.675 -0.47591 0 0 0 1.0009 1 39759 39759 0.56317 0.46833 1 + 47160 23094 31685 32428 55139 55139 -0.11610595327829287 PQSRSLVTGS 10 Unmodified _PQSRSLVTGS_ 0 0 0 REV__ENSG00000049283|ENST00000268933|EPN3 REV__ENSG00000049283|ENST00000268933|EPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7786865234375 2 516.277638 1030.54072 0.2316 0.00011957 2.7883 0.0014395 3.0199 0.0015591 516.279956025201 37.621 0.41378 37.621 37.35 37.764 0 58 21 5 0 0 0 0.27276 1 19952 19952 29.082 0 1 16206000 + 47161 17248 31686 32429 55140 55140 0.02667366949526695 PQSYRYRE 8 Unmodified _PQSYRYRE_ 0 0 0 REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB MSMS AL20221201_MKP_PDAC_01 4 549.7717895507812 2 549.76998 1097.52541 NaN NaN NaN NaN NaN NaN NaN 18.764 1 16.142 15.642 16.642 -2.6215 0 0 0 0.97444 1 9903 9903 4.756 0 1 + 47162 22471 31687 32430 55141 55141 -0.019454998476703622 PQSYVTGVDM 10 Unmodified _PQSYVTGVDM_ 0 0 0 REV__ENSG00000115155|ENST00000272371|OTOF REV__ENSG00000115155|ENST00000272371|OTOF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2979736328125 2 548.752607 1095.49066 -0.57314 -0.00031451 0.28131 0.00015437 -0.29183 -0.00016014 548.7524783049988 78.223 0.34288 77.737 77.545 77.888 -0.48596 28 15 3 0 0 0 0.22489 1 42912 42912 18.146 1.2041 1 1407900 + 47163 18953 31688 32431 55142 55142 -0.053265037706296425 PQTHVIENLH 10 Unmodified _PQTHVIENLH_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5433044433594 3 396.543767 1186.60947 -0.45973 -0.0001823 -0.21027 -8.3382E-05 -0.67 -0.00026568 396.54361042393117 20.844 0.11691 20.844 20.784 20.901 0 26 18 2 0 0 0 0.69377 1 10503 10503 1.7423 0.63252 1 1181700 47164 5266 31689 32432 55143 55143 0.023630312492286976 PQTHVIENLH 10 Unmodified _PQTHVIENLH_ 0 0 0 ENST00000563711.5_1_16:21973998-21987565:+|nuORF;ENSG00000140740|ENST00000268379|UQCRC2 ENST00000563711.5_1_16:21973998-21987565:+|nuORF ENST00000563711.5_1_16:21973998-21987565:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 396.543767 1186.60947 -0.31278 -0.00012403 0.30465 0.00012081 -0.0081243 -3.2216E-06 396.5438675803574 20.725 0.12963 20.753 20.666 20.796 0.028357 -0.045545 0.0004348 NaN 1.7423 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 652620 47165 5266 31689 32432 0.023630312492286976 PQTKLHQQF 9 Unmodified _PQTKLHQQF_ 0 0 0 nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2;nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2 nc|ENSG00000176406|Q9UQ26-4|RIMS2 nc|ENSG00000176406|Q9UQ26-4|RIMS2 MSMS AL20221201_MKP_PDAC_01 4 563.8043212890625 2 563.803823 1125.59309 NaN NaN NaN NaN NaN NaN NaN 102.1 1 95.926 95.426 96.426 -6.1757 0 0 0 0.6306 1 68528 68528 11.64 0 1 47166 8591 31690 32433 55144 55144 0.035319500831292316 PQTLQAPL 8 Unmodified _PQTLQAPL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 869.4986572265625 1 867.493444 866.486168 0.047967 4.1611E-05 0.41957 0.00036397 0.46753 0.00040558 867.493930795373 49.416 0.42004 49.024 48.778 49.198 -0.3923 39 20 3 0 0 0 0.79887 1 26489 26489 7.2892 0 1 3594200 47167 2666 31691 32434 55145 55145 0.04758399868762808 PQTNFETEF 9 Unmodified _PQTNFETEF_ 0 0 0 REV__nc|ENSG00000196821|Q9H6K1-2|ILRUN REV__nc|ENSG00000196821|Q9H6K1-2|ILRUN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7510375976562 2 556.748379 1111.4822 NaN NaN NaN NaN NaN NaN NaN 78.405 1 78.405 77.905 78.905 0 0 0 0 0.83049 1 43572 43572 3.9444 0.66309 1 + 47168 23872 31692 32435 55146 55146 -0.06907734415631239 PQTPPKIDYL 10 Unmodified _PQTPPKIDYL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2181396484375 3 391.216768 1170.62847 0.44108 0.00017256 2.2835 0.00089333 2.7246 0.0010659 391.21714746560895 23.36 0.45812 20.582 20.381 20.839 -2.7784 61 36 3 0 0 0 0.57893 1 12558 12558 7.4771 0 1 10321000 47169 6097 31693 32436 55147 55147 0.049985678202801864 PQTRRISL 8 Unmodified _PQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7927551269531 2 485.793258 969.571963 0.3139 0.00015249 -0.1901 -9.2352E-05 0.1238 6.0141E-05 485.7932334704334 34.315 0.23196 34.343 34.203 34.435 0.027401 21 10 3 0 0 0 0.36898 1 18053 18053 47.749 11.622 1 3629400 47170 10109 31694 32437 55148 55148 0.08595984774274257 PQTRRISL 8 Unmodified _PQTRRISL_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000503716.5_1_4:151186876-151502511:-|nuORF nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.79345703125 2 485.793258 969.571963 0.52181 0.00025349 0.56931 0.00027657 1.0911 0.00053006 485.7935562562427 38.47 0.28326 34.101 33.932 34.215 -4.3689 29 17 2 0 0 0 0.19235 1 22646 22646 72.968 24.622 1 13774000 47171 10109 31694 32437 55149 55149 0.08595984774274257 PQTVYARFL 9 Unmodified _PQTVYARFL_ 0 0 0 ENSG00000112041|ENST00000229771|TULP1 ENSG00000112041|ENST00000229771|TULP1 ENSG00000112041|ENST00000229771|TULP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.8277587890625 2 547.803291 1093.59203 0.9253 0.00050688 3.1084 0.0017028 4.0337 0.0022097 548.3070219382809 79.14 0.61673 72.964 72.531 73.148 -6.1757 60 34 2 0 0 0 0.19891 1 51642 51642 11.64 2.2929 1 23251000 47172 2852 31695 32438 55150 55150 0.04897735714234841 PQVGSISFSE 10 Unmodified _PQVGSISFSE_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-6|TNIK REV__nc|ENSG00000154310|Q9UKE5-6|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7589111328125 2 525.758746 1049.50294 0.31809 0.00016724 -0.74483 -0.0003916 -0.42675 -0.00022437 525.7586600300509 92.914 0.44411 92.456 92.284 92.728 -0.4574 65 23 4 0 0 0 0.46514 2 50775 50775;50877 18.146 2.2992 1 4442000 + 47173 21224 31696 32439 55151;55152 55151 -0.01983144035943951 PQVGSISFSE 10 Unmodified _PQVGSISFSE_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-6|TNIK REV__nc|ENSG00000154310|Q9UKE5-6|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1050.160766601562 1 1050.51022 1049.50294 0.2907 0.00030538 -1.0783 -0.0011328 -0.78759 -0.00082738 1051.5105897939538 92.942 0.097725 92.485 92.462 92.56 -0.4574 7 5 2 0 0 0 0.6785 1 50826 50826 5.2969 1.7004 1 714450 + 47174 21224 31696 32439 55153 55153 -0.01983144035943951 PQVLEHYVI 9 Unmodified _PQVLEHYVI_ 0 0 0 REV__nc|ENSG00000147852|P98155-2|VLDLR REV__nc|ENSG00000147852|P98155-2|VLDLR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3035278320312 2 549.303124 1096.5917 0.41107 0.0002258 0.3544 0.00019467 0.76547 0.00042047 549.3034791520718 91.279 0.28453 90.784 90.663 90.948 -0.49458 27 12 3 0 0 0 0.5029 1 49869 49869 7.2892 2.96 1 891130 + 47175 20914 31697 32440 55154 55154 0.04726315994366814 PQVLNLRSE 9 Unmodified _PQVLNLRSE_ 0 0 0 REV__ENST00000398295.3_1_2:85004811-85005102:-|nuORF REV__ENST00000398295.3_1_2:85004811-85005102:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.3255615234375 2 528.29583 1054.57711 NaN NaN NaN NaN NaN NaN NaN 53.219 1 52.767 52.267 53.267 -0.45173 0 0 0 0.41346 1 28788 28788 19.257 3.4098 1 + 47176 26564 31698 32441 55155 55155 0.052002438462295686 PQVPGWEP 8 Unmodified _PQVPGWEP_ 0 0 0 nc|ENSG00000285891|A0A3B3IT52|MSANTD5 nc|ENSG00000285891|A0A3B3IT52|MSANTD5 nc|ENSG00000285891|A0A3B3IT52|MSANTD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8676147460938 2 455.226885 908.439217 NaN NaN NaN NaN NaN NaN NaN 95.921 1 95.921 95.421 96.421 0 0 0 0 0.97444 1 53013 53013 2.3027 0 1 47177 16621 31699 32442 55156 55156 -0.018664596823896318 PQVTVQPV 8 Unmodified _PQVTVQPV_ 0 0 0 REV__ENSG00000144857|ENST00000682979|BOC REV__ENSG00000144857|ENST00000682979|BOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.49658203125 1 867.493444 866.486168 0.079454 6.8926E-05 0.030001 2.6026E-05 0.10946 9.4952E-05 867.4934119122181 49.013 0.54415 49.013 48.808 49.352 0 61 26 3 0 0 0 0.74163 1 26844 26844 13.508 0.46542 1 20281000 + 47178 20743 31700 32443 55157 55157 0.04758399868762808 PQVVEKNSL 9 Unmodified _PQVVEKNSL_ 0 0 0 REV__ENSG00000182545|ENST00000430083|RNASE10 REV__ENSG00000182545|ENST00000430083|RNASE10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2863159179688 2 507.284931 1012.55531 1.135 0.00057579 0.74762 0.00037926 1.8827 0.00095505 507.28565307820634 37.237 0.42027 32.953 32.736 33.156 -4.2835 40 25 2 0 0 0 0.11784 1 21796 21796 31.268 3.6395 1 7193200 + 47179 23277 31701 32444 55158 55158 0.04953439097675982 PQWTRIPTDE 10 Unmodified _PQWTRIPTDE_ 0 0 0 REV__ENST00000474033.5_1_1:1288405-1288789:-|nuORF REV__ENST00000474033.5_1_1:1288405-1288789:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2092895507812 3 414.875293 1241.60405 -0.67358 -0.00027945 0.39771 0.000165 -0.27587 -0.00011445 414.87555624018967 26.985 0.23089 26.985 26.824 27.055 0 23 10 4 0 0 0 0.66652 1 13883 13883 6.6304 1.5829 1 4196400 + 47180 27554 31702 32445 55159 55159 -0.007086923332508377 PQWTWRRRRRR 11 Unmodified _PQWTWRRRRRR_ 0 0 0 ENST00000400913.5_1_1:6535562-6545948:-|nuORF;ENST00000537245.5_1_1:6535562-6556614:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.4746704101562 2 827.474715 1652.93488 NaN NaN NaN NaN NaN NaN NaN 77.7 1 77.217 76.717 77.717 -0.4826 0 0 0 0.9435 1 42538 42538 0 0 1 47181 12879 31703 32446 55160 55160 0.13452655616401898 PQWTWRRRRRR 11 Unmodified _PQWTWRRRRRR_ 0 0 0 ENST00000400913.5_1_1:6535562-6545948:-|nuORF;ENST00000537245.5_1_1:6535562-6556614:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.4763793945312 2 827.474715 1652.93488 NaN NaN NaN NaN NaN NaN NaN 98.719 1 98.691 98.191 99.191 -0.028282 0 0 0 0.94307 1 54826 54826 0.30703 0.30703 1 47182 12879 31703 32446 55161 55161 0.13452655616401898 PQYFSSYYT 9 Unmodified _PQYFSSYYT_ 0 0 0 REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1 REV__nc|ENSG00000137090|Q9Y5R6-2|DMRT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.7908325195312 2 578.253297 1154.49204 1.4815 0.00085669 -2.3827 -0.0013778 -0.90122 -0.00052113 578.2517844525472 79.446 0.33195 73.271 73.132 73.464 -6.1757 29 19 2 0 0 0 0.18882 1 52115 52115 15.847 9.124 1 15261000 + 47183 20211 31704 32447 55162 55162 -0.07902546410241484 PQYPDFSSY 9 Unmodified _PQYPDFSSY_ 0 0 0 ENSG00000113722|ENST00000231656|CDX1 ENSG00000113722|ENST00000231656|CDX1 ENSG00000113722|ENST00000231656|CDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2377319335938 2 552.237647 1102.46074 0.10316 5.6971E-05 0.64117 0.00035408 0.74434 0.00041105 552.2383198452268 37.831 0.21961 37.56 37.44 37.66 -0.27133 24 10 3 0 0 0 0.55775 1 19905 19905 3.9444 0 1 6327500 47184 2994 31705 32448 55163 55163 -0.08639119444342214 PQYPDFSSY 9 Unmodified _PQYPDFSSY_ 0 0 0 ENSG00000113722|ENST00000231656|CDX1 ENSG00000113722|ENST00000231656|CDX1 ENSG00000113722|ENST00000231656|CDX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 552.237647 1102.46074 0.38292 0.00021146 0.34018 0.00018786 0.7231 0.00039933 552.2377973294132 37.468 0.31158 37.468 37.333 37.645 0 -0.045834 -6.7659E-05 NaN 3.9444 59 16 5 NaN NaN NaN NaN 0 NaN NaN 0 52180000 47185 2994 31705 32448 -0.08639119444342214 PQYSYHDIN 9 Unmodified _PQYSYHDIN_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5417175292969 3 379.505089 1135.49344 0.97076 0.00036841 -1.8456 -0.00070043 -0.87489 -0.00033202 379.50424618362786 45.033 0.24048 40.181 40.053 40.294 -4.852 22 15 2 0 0 0 0.21439 1 27489 27489 3.3196 0 1 8452100 47186 3829;16172 31706 32449 55164 55164 -0.06888912321483076 PQYTRGFDMSR 11 Unmodified _PQYTRGFDMSR_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5;REV__LAMA5-CABLES2|1|fusion REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.5487060546875 3 453.215433 1356.62447 -0.083671 -3.7921E-05 -1.67 -0.00075687 -1.7537 -0.00079479 453.21467775318416 20.292 0.20307 20.292 20.175 20.378 0 32 13 3 0 0 0 0.67892 1 10190 10190 6.2344 1.8282 1 2582200 + 47187 19736;29448 31707 32450 55165 55165 -0.03957844945080069 PRAALTRL 8 Unmodified _PRAALTRL_ 0 0 0 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2855224609375 2 449.285069 896.555585 0.55731 0.00025039 0.40479 0.00018187 0.9621 0.00043226 449.28526460603604 28.45 0.21791 28.48 28.377 28.595 0.029564 14 8 2 0 0 0 0.17811 1 14805 14805 78.728 20.049 1 4488800 47188 7763 31708 32451 55166 55166 0.10316903608168104 PRADHAYCCI 10 Unmodified _PRADHAYCCI_ 0 0 0 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5040283203125 3 383.504038 1147.49028 0.58812 0.00022554 -0.95922 -0.00036786 -0.3711 -0.00014232 383.50363124988854 12.273 0.4239 9.7914 9.6817 10.106 -2.482 303 160 3 0 0 0 0.71123 1 6310 6310 0.69767 0 1 9891300 47189 6835 31709 32452 55167 55167 -0.07756201971483279 PRADLRARGS 10 Unmodified _PRADLRARGS_ 0 0 0 nc|ENSG00000197119|Q8N8R3-2|SLC25A29 nc|ENSG00000197119|Q8N8R3-2|SLC25A29 nc|ENSG00000197119|Q8N8R3-2|SLC25A29 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8949279785156 3 366.875739 1097.60539 -0.20559 -7.5427E-05 3.911 0.0014348 3.7054 0.0013594 366.87676236124383 30.912 0.2541 30.942 30.783 31.037 0.030104 28 10 4 0 0 0 0.23426 1 16164 16164 10.899 3.6097 1 2171500 47190 16483 31710 32453 55168 55168 0.06048986546170454 PRAERFEKF 9 Unmodified _PRAERFEKF_ 0 0 0 nc|ENSG00000125731|Q9BRG2-2|SH2D3A;ENSG00000125731|ENST00000245908|SH2D3A nc|ENSG00000125731|Q9BRG2-2|SH2D3A nc|ENSG00000125731|Q9BRG2-2|SH2D3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2147827148438 3 393.88049 1178.61964 0.88922 0.00035025 1.2487 0.00049184 2.1379 0.00084209 394.2150451065416 50.546 0.32263 50.492 50.305 50.628 -0.053871 21 15 2 0 0 0 0.58865 1 27333 27333 1.0715 0 1 3159200 47191 3874 31711 32454 55169 55169 0.03747638974459733 PRAFGVRL 8 Unmodified _PRAFGVRL_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23;ENST00000568570.1_1_16:31993258-32005419:+|nuORF ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.279052734375 2 458.279786 914.54502 0.1435 6.5765E-05 -0.84476 -0.00038714 -0.70125 -0.00032137 458.27938610244905 41.389 0.23046 41.387 41.261 41.491 -0.0017929 16 10 2 0 0 0 0.28079 1 22138 22138 57.471 6.6163 1 3948700 47192 10911 31712 32455 55170 55170 0.08432920953748635 PRAQMGDRALA 11 Unmodified _PRAQMGDRALA_ 0 0 0 ENST00000435327.2_1_3:42791351-42799837:-|nuORF ENST00000435327.2_1_3:42791351-42799837:-|nuORF ENST00000435327.2_1_3:42791351-42799837:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8760681152344 3 395.876751 1184.60842 0.010574 4.186E-06 -2.2316 -0.00088345 -2.2211 -0.00087927 395.87571052896834 22.159 0.21547 22.173 22.063 22.278 0.013796 20 8 3 0 0 0 0.69509 1 11363 11363 4.7159 1.1289 1 1976300 47193 13310 31713 32456 55171 55171 0.02350493608673787 PRASAAAGRTP 11 Unmodified _PRASAAAGRTP_ 0 0 0 ENST00000407479.5_1_16:3712726-3712951:+|nuORF ENST00000407479.5_1_16:3712726-3712951:+|nuORF ENST00000407479.5_1_16:3712726-3712951:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.1966857910156 3 352.19659 1053.56794 -0.071445 -2.5163E-05 0.87791 0.0003092 0.80646 0.00028403 352.19705146159646 15.546 0.22405 15.552 15.473 15.698 0.0057774 27 21 2 0 0 0 0.69316 1 7750 7750 2.2527 0 1 647250 47194 12946 31714 32457 55172 55172 0.04329895280557139 PRASCWLRL 9 Unmodified _PRASCWLRL_ 0 0 0 ENST00000302506.7_2_3:48200233-48200377:-|nuORF ENST00000302506.7_2_3:48200233-48200377:-|nuORF ENST00000302506.7_2_3:48200233-48200377:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.3055419921875 2 551.302936 1100.59132 NaN NaN NaN NaN NaN NaN NaN 20.215 1 17.523 17.023 18.023 -2.693 0 0 0 0.36554 1 10760 10760 21.747 3.6117 1 47195 11580 31715 32458 55173 55173 0.045046177935319065 PRASHKAV 8 Unmodified _PRASHKAV_ 0 0 0 ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN ENSG00000088812|ENST00000262919|ATRN ENSG00000088812|ENST00000262919|ATRN MSMS AL20221201_MKP_PDAC_01 4 433.2543029785156 2 433.253769 864.492984 NaN NaN NaN NaN NaN NaN NaN 20.283 1 17.59 17.09 18.09 -2.693 0 0 0 0.95254 1 10801 10801 10.074 1.4806 1 47196 1496 31716 32459 55174 55174 0.05531757539984028 PRASRPWPL 9 Unmodified _PRASRPWPL_ 0 0 0 REV__ENST00000441429.1_1_19:54705360-54705441:+|nuORF REV__ENST00000441429.1_1_19:54705360-54705441:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5419006347656 3 360.541809 1078.6036 -0.036443 -1.3139E-05 -0.047727 -1.7208E-05 -0.08417 -3.0347E-05 360.54203088765996 15.81 0.15334 15.815 15.746 15.9 0.0050564 22 10 3 0 0 0 0.39863 1 7906 7906 12.241 0.74595 1 1059400 + 47197 27089 31717 32460 55175 55175 0.06743977528230971 PRATHTHGAL 10 Unmodified _PRATHTHGAL_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.1934509277344 3 354.193068 1059.55738 -0.063052 -2.2332E-05 1.4129 0.00050045 1.3499 0.00047812 354.1935159123316 15.989 0.85343 15.994 15.662 16.515 0.0050564 116 70 3 0 0 0 0.63089 1 7992 7992 9.544 2.4423 1 2118100 47198 5249 31718 32461 55176 55176 0.029979126261423517 PRAWRLDPGE 10 Unmodified _PRAWRLDPGE_ 0 0 0 ENST00000396901.5_2_19:36387403-36388674:-|nuORF;ENST00000586361.5_1_19:36387800-36388662:-|nuORF ENST00000396901.5_2_19:36387403-36388674:-|nuORF ENST00000396901.5_2_19:36387403-36388674:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5447082519531 3 399.543878 1195.60981 0.65343 0.00026107 -0.016391 -6.5489E-06 0.63704 0.00025453 399.543780229631 33.031 0.57433 29.175 28.887 29.461 -3.8562 99 35 3 0 0 0 0.32072 1 18752 18752 28.234 5.4587 1 124040000 47199 12809 31719 32462 55177 55177 0.01982450969057936 PRAYHIEQR 9 Unmodified _PRAYHIEQR_ 0 0 0 REV__ENSG00000082458|ENST00000374360|DLG3 REV__ENSG00000082458|ENST00000374360|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5451354980469 3 390.54399 1168.61014 -0.037936 -1.4816E-05 0.3031 0.00011837 0.26516 0.00010356 390.54414876418485 17.335 0.15729 17.34 17.257 17.414 0.0050564 30 11 4 0 0 0 0.35911 1 8730 8730 14.405 7.3683 1 5545300 + 47200 17707 31720 32463 55178 55178 0.03257870688935327 PRAYHIEQR 9 Unmodified _PRAYHIEQR_ 0 0 0 REV__ENSG00000082458|ENST00000374360|DLG3 REV__ENSG00000082458|ENST00000374360|DLG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.544677734375 3 390.54399 1168.61014 0.99194 0.0003874 3.3403 0.0013045 4.3323 0.0016919 390.5441341535539 18.372 0.33751 15.75 15.594 15.931 -2.6215 143 29 6 0 0 0 0.35911 1 9634 9634 14.405 0.88672 1 35145000 + 47201 17707 31720 32463 55179 55179 0.03257870688935327 PRCASHQG 8 Unmodified _PRCASHQG_ 0 0 0 REV__ENST00000398944.7_1_16:28394518-28399487:-|nuORF REV__ENST00000398944.7_1_16:28394518-28399487:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.1992797851562 2 428.198136 854.381719 NaN NaN NaN NaN NaN NaN NaN 19.622 1 19.63 19.13 20.13 0.0078487 0 0 0 0.97444 1 9987 9987 2.3027 0.24298 1 + 47202 26575 31721 32464 55180 55180 -0.05129625159599982 PRCCYPYSANL 11 Unmodified _PRCCYPYSANL_ 0 0 0 REV__ENSG00000273238|ENST00000610212|TMEM271 REV__ENSG00000273238|ENST00000610212|TMEM271 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.527099609375 3 429.526731 1285.55836 0.80649 0.00034641 -1.6568 -0.00071163 -0.8503 -0.00036523 429.5259584604738 35.522 0.2207 31.329 31.188 31.409 -4.1928 22 13 2 0 0 0 0.68427 1 20647 20647 2.6312 0.54727 1 7674900 + 47203 24634 31722 32465 55181 55181 -0.0729937711146249 PRCFQSDTWRW 11 Unmodified _PRCFQSDTWRW_ 0 0 0 ENST00000396623.7_1_8:67369110-67372638:+|nuORF ENST00000396623.7_1_8:67369110-67372638:+|nuORF ENST00000396623.7_1_8:67369110-67372638:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 742.3441162109375 2 741.340778 1480.667 -0.58781 -0.00043577 0.38371 0.00028446 -0.2041 -0.00015131 741.3412577587978 33.64 0.49934 33.64 33.526 34.025 0 84 32 4 0 0 0 0.70147 1 17615 17615 8.1555 5.1603 1 33578000 47204 12800 31723 32466 55182 55182 -0.05410449816872642 PRCKGAAK 8 Unmodified _PRCKGAAK_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5855407714844 2 415.736897 829.459241 0.15808 6.5721E-05 -1.7603 -0.00073182 -1.6022 -0.0006661 415.7360323876154 62.04 0.21424 62.007 61.888 62.102 -0.032787 16 10 2 0 0 0 8.7369 1 33886 33886 2.5775 0 1 1510400 47205 444 31724 32467 55183 55183 0.037690127765813486 PRCPPGVSL 9 Unmodified _PRCPPGVSL_ 0 0 0 ENSG00000112761|ENST00000368666|CCN6;nc|ENSG00000112761|O95389-2|CCN6 ENSG00000112761|ENST00000368666|CCN6 ENSG00000112761|ENST00000368666|CCN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2504577636719 2 463.249837 924.485122 0.63178 0.00029267 -0.043762 -2.0273E-05 0.58802 0.0002724 463.2499217829343 28.38 0.41645 25.232 25.041 25.458 -3.1482 35 21 2 0 0 0 0.1773 1 15911 15911 25.399 2.2509 1 16106000 47206 2917 31725 32468 55184 55184 0.019858622282072247 PRCSFLMLR 9 Unmodified _PRCSFLMLR_ 0 0 0 ENST00000538035.5_3_6:24876009-24936140:-|nuORF ENST00000538035.5_3_6:24876009-24936140:-|nuORF ENST00000538035.5_3_6:24876009-24936140:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2016296386719 3 374.86854 1121.58379 1.3315 0.00049913 -0.15359 -5.7577E-05 1.1779 0.00044156 375.202217123067 42.094 0.65882 37.41 37.051 37.709 -4.6846 132 41 4 0 0 0 0.41742 2 25204 25204;25346 7.609 1.8048 1 58901000 47207 15001 31726 32469 55185;55186 55185 0.0278614220160307 PRCVGRIQW 9 Unmodified _PRCVGRIQW_ 0 0 0 ENSG00000164867|ENST00000297494|NOS3;nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3 ENSG00000164867|ENST00000297494|NOS3 ENSG00000164867|ENST00000297494|NOS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2019958496094 3 372.202799 1113.58657 NaN NaN NaN NaN NaN NaN NaN 45.049 1 44.725 44.225 45.225 -0.32425 0 0 0 0.84737 1 24047 24047 0.96228 0.3991 1 47208 7254 31727 32470 55187 55187 0.03431733650768365 PRDASNLRPA 10 Unmodified _PRDASNLRPA_ 0 0 0 REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2 REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2004089355469 3 366.200111 1095.5785 -0.01539 -5.6356E-06 1.1516 0.0004217 1.1362 0.00041606 366.20066916609534 15.233 0.15358 15.239 15.163 15.317 0.0057774 11 7 2 0 0 0 0.57893 1 7598 7598 7.4771 2.0744 1 877730 + 47209 29872 31728 32471 55188 55188 0.034538779349986726 PRDASNLRPA 10 Unmodified _PRDASNLRPA_ 0 0 0 REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2 REV__nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 366.200111 1095.5785 -0.01539 -5.6356E-06 1.1516 0.0004217 1.1362 0.00041606 366.20066916609534 15.233 0.15358 15.239 15.163 15.317 0.0057774 0 0 NaN 7.4771 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 877730 + 47210 29872 31728 32471 0.034538779349986726 PRDGGADLK 9 Unmodified _PRDGGADLK_ 0 0 0 ENSG00000188070|ENST00000433688|ZFTA ENSG00000188070|ENST00000433688|ZFTA ENSG00000188070|ENST00000433688|ZFTA MSMS AL20221201_MKP_PDAC_01 4 464.7460632324219 2 464.745973 927.477394 NaN NaN NaN NaN NaN NaN NaN 33.232 1 29.376 28.876 29.876 -3.8562 0 0 0 0.63508 1 19043 19043 11.495 1.3113 1 47211 9626 31729 32472 55189 55189 0.010754262322734576 PRDRPVMG 8 Unmodified _PRDRPVMG_ 0 0 0 REV__ENST00000523259.5_1_5:139931458-139936810:-|nuORF REV__ENST00000523259.5_1_5:139931458-139936810:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2449035644531 2 464.245086 926.47562 0.45492 0.00021119 0.26652 0.00012373 0.72144 0.00033492 464.2452124051842 32.984 0.29724 29.127 28.904 29.202 -3.8562 26 17 2 0 0 0 0.71527 1 18860 18860 15.847 3.3156 1 23601000 + 47212 28312 31730 32473 55190 55190 0.009440939426895056 PRDTDFNFRRH 11 Unmodified _PRDTDFNFRRH_ 0 0 0 REV__ENSG00000198952|ENST00000361813|SMG5 REV__ENSG00000198952|ENST00000361813|SMG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.578369140625 3 487.576241 1459.70689 NaN NaN NaN NaN NaN NaN NaN 64.564 1 64.564 64.064 65.064 0 0 0 0 0.94293 1 36008 36008 0.40827 0.2854 1 + 47213 24106 31731 32474 55191 55191 -0.004571868219272801 PRDVVYGSPMT 11 Unmodified _PRDVVYGSPMT_ 0 0 0 REV__ENSG00000152580|ENST00000282466|IGSF10 REV__ENSG00000152580|ENST00000282466|IGSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8695068359375 3 407.869262 1220.58596 0.099621 4.0632E-05 0.31384 0.00012801 0.41347 0.00016864 407.8696948339767 25.19 0.49356 22.307 22.219 22.712 -2.8831 99 34 4 0 0 0 0.70147 1 13844 13844 4.1166 0.79699 1 14074000 + 47214 21126 31732 32475 55192 55192 -0.015511505796212077 PREKPFDRP 9 Unmodified _PREKPFDRP_ 0 0 0 REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__ENSG00000136002|ENST00000409359|ARHGEF4 MSMS AL20221201_MKP_PDAC_01 4 381.2103881835938 3 381.208607 1140.60399 NaN NaN NaN NaN NaN NaN NaN 19.765 1 17.109 16.609 17.609 -2.6564 0 0 0 0.81961 1 10495 10495 3.3196 0.88486 1 + 47215 20126 31733 32476 55193 55193 0.03931352457425419 PRELFSEL 8 Unmodified _PRELFSEL_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7662048339844 2 495.766374 989.518196 0.13563 6.724E-05 0.071011 3.5205E-05 0.20664 0.00010244 495.7662120534461 61.766 0.33216 61.766 61.597 61.929 0 29 14 3 0 0 0 0.75262 1 34503 34503 12.532 0 1 2964400 + 47216 29704 31734 32477 55194 55194 0.023017675519099612 PRELKEVF 8 Unmodified _PRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2898559570312 2 509.290017 1016.56548 0.15876 8.0852E-05 0.1441 7.3388E-05 0.30285 0.00015424 509.290307325948 52.056 0.25532 51.622 51.474 51.73 -0.43367 18 12 2 0 0 0 0.58039 1 28128 28128 27.629 2.2295 1 2517700 47217 4867;1153;9937 31735 32478 55195 55195 0.05786046822890967 PRELKEVF 8 Unmodified _PRELKEVF_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2900085449219 2 509.290017 1016.56548 0.2908 0.0001481 0.85695 0.00043644 1.1478 0.00058454 509.2898448111254 51.701 0.21871 51.642 51.533 51.751 -0.058918 18 10 2 0 0 0 0.34916 1 28015 28015 49.933 17.628 1 1774900 47218 4867;1153;9937 31735 32478 55196 55196 0.05786046822890967 PRELSLQYF 9 Unmodified _PRELSLQYF_ 0 0 0 REV__ENSG00000168612|ENST00000372523|ZSWIM1 REV__ENSG00000168612|ENST00000372523|ZSWIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8735961914062 3 384.873113 1151.59751 1.546 0.00059503 0.31101 0.0001197 1.8571 0.00071473 384.87315369349824 20.284 0.35617 17.591 17.525 17.882 -2.693 33 19 2 0 0 0 0.41742 1 10795 10795 7.609 3.7326 1 2047400 + 47219 22328 31736 32479 55197 55197 0.027774145060448063 PRELSLQYF 9 Unmodified _PRELSLQYF_ 0 0 0 REV__ENSG00000168612|ENST00000372523|ZSWIM1 REV__ENSG00000168612|ENST00000372523|ZSWIM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5250244140625 3 384.873113 1151.59751 1.546 0.00059503 0.31101 0.0001197 1.8571 0.00071473 384.87315369349824 20.284 0.35617 17.591 17.525 17.882 -2.693 33 19 2 0 0 0 0.19111 1 10783 10783 11.495 11.495 1 2047400 + 47220 22328 31736 32479 55198 55198 0.027774145060448063 PREPASRRAM 10 Unmodified _PREPASRRAM_ 0 0 0 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 REV__nc|ENSG00000171798|Q76NI1-4|KNDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8113403320312 2 585.811656 1169.60876 1.0649 0.00062385 -1.1 -0.00064437 -0.035027 -2.0519E-05 585.8113004942225 20.13 0.29498 17.473 17.312 17.607 -2.6564 40 20 3 0 0 0 0.29752 1 10685 10685 27.629 8.3718 1 6151100 + 47221 22601 31737 32480 55199 55199 0.030739133285351272 PREQGLRL 8 Unmodified _PREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7842407226562 2 484.785433 967.556313 -0.30714 -0.0001489 -0.45432 -0.00022025 -0.76146 -0.00036914 484.785225771141 35.693 0.26542 35.47 35.333 35.599 -0.2224 22 11 3 0 0 0 0.08919 1 18681 18681 103.35 3.2628 1 5454800 47222 16412 31738 32481 55200 55200 0.07123698257237265 PREQGLRL 8 Unmodified _PREQGLRL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.78564453125 2 484.785433 967.556313 0.92608 0.00044895 -0.84693 -0.00041058 0.079149 3.837E-05 484.78511629904864 39.349 0.38765 34.898 34.704 35.091 -4.4509 48 23 3 0 0 0 0.16757 1 23285 23285 82.529 23.161 1 24174000 47223 16412 31738 32481 55201 55201 0.07123698257237265 PRFEAWDFTK 10 Unmodified _PRFEAWDFTK_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8851623535156 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 17.888 1 17.888 17.388 18.388 0 0 0 0 0.99273 1 8853 8853 1.4551 0.12547 1 + 47224 19900 31739 32482 55202 55202 -0.006117980909721155 PRFEEVEEEPE 11 Unmodified _PRFEEVEEEPE_ 0 0 0 ENSG00000117360|ENST00000324862|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF ENSG00000117360|ENST00000324862|PRPF3 ENSG00000117360|ENST00000324862|PRPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2103271484375 3 463.87714 1388.60959 0.11226 5.2076E-05 -3.9717 -0.0018424 -3.8594 -0.0017903 463.87533826285505 20.464 0.08169 20.464 20.449 20.531 0 10 8 2 0 0 0 0.72478 1 10312 10312 1.9275 1.5608 1 819800 47225 3296 31740 32483 55203 55203 -0.06917058332078341 PRFKDRHSQE 10 Unmodified _PRFKDRHSQE_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8890075683594 3 433.889937 1298.64798 NaN NaN NaN NaN NaN NaN NaN 17.86 1 17.86 17.36 18.36 0 0 0 0 1.0004 1 8836 8836 0.62683 0 1 47226 3775 31741 32484 55204 55204 0.01060336883756463 PRFPGRHLF 9 Unmodified _PRFPGRHLF_ 0 0 0 ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2138671875 3 376.213804 1125.61958 -0.01584 -5.9593E-06 0.32358 0.00012174 0.30774 0.00011578 376.21379798922715 53.215 0.37969 53.152 53.044 53.423 -0.063423 43 18 3 0 0 0 0.57757 1 28940 28940 2.7352 1.7729 1 5588700 47227 13495 31742 32485 55205 55205 0.06179683765117261 PRFPGRHLF 9 Unmodified _PRFPGRHLF_ 0 0 0 ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF ENST00000448759.1_1_1:43352460-43353038:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 376.213804 1125.61958 0.29793 0.00011209 -0.8431 -0.00031719 -0.54517 -0.0002051 376.21313240622874 53.095 0.41469 53.095 52.938 53.353 0 -0.028259 -0.0010476 NaN 2.7352 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 912160 47228 13495 31742 32485 0.06179683765117261 PRFPLLPG 8 Unmodified _PRFPLLPG_ 0 0 0 ENST00000257963.8_1_12:52388223-52388508:+|nuORF ENST00000257963.8_1_12:52388223-52388508:+|nuORF ENST00000257963.8_1_12:52388223-52388508:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.5464172363281 2 448.771263 895.527973 NaN NaN NaN NaN NaN NaN NaN 29.995 1 30.025 29.525 30.525 0.030106 0 0 0 0.97444 1 15675 15675 2.5775 0.51773 1 47229 11197 31743 32486 55206 55206 0.07603000347944544 PRFRVPNNHSF 11 Unmodified _PRFRVPNNHSF_ 0 0 0 REV__ENSG00000110066|ENST00000304363|KMT5B REV__ENSG00000110066|ENST00000304363|KMT5B MSMS AL20221201_MKP_PDAC_01 4 457.5737609863281 3 457.57406 1369.70035 NaN NaN NaN NaN NaN NaN NaN 16.351 1 13.794 13.294 14.294 -2.557 0 0 0 0.93933 1 8465 8465 1.2148 0 1 + 47230 18688 31744 32487 55207 55207 0.030289200173456265 PRFSRKLL 8 Unmodified _PRFSRKLL_ 0 0 0 REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.8217163085938 2 508.821818 1015.62908 NaN NaN NaN NaN NaN NaN NaN 25.018 1 22.135 21.635 22.635 -2.8831 0 0 0 0.97444 1 13659 13659 5.2307 2.6532 1 + 47231 27397 31745 32488 55208 55208 0.12189452050654381 PRGAACSL 8 Unmodified _PRGAACSL_ 0 0 0 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 REV__nc|ENSG00000163349|Q86Z02-2|HIPK1 MSMS AL20221201_MKP_PDAC_01 4 387.6990051269531 2 387.69998 773.385408 NaN NaN NaN NaN NaN NaN NaN 22.236 1 19.502 19.002 20.002 -2.7348 0 0 0 0.69365 1 11952 11952 28.487 0 1 + 47232 21751 31746 32489 55209 55209 -0.010349553857395222 PRGAAKAI 8 Unmodified _PRGAAKAI_ 0 0 0 nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2;nc|ENSG00000102100|P78381-5|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 nc|ENSG00000102100|P78381-2|SLC35A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2454528808594 2 392.245412 782.476272 0.0045473 1.7837E-06 0.057422 2.2524E-05 0.06197 2.4307E-05 392.2454939498325 20.287 0.19957 20.298 20.189 20.388 0.010553 22 11 3 0 0 0 0.5284 1 10329 10329 32.117 5.7757 1 2500000 47233 2016 31747 32490 55210 55210 0.076332566540259 PRGAFRLAAE 10 Unmodified _PRGAFRLAAE_ 0 0 0 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2051086425781 3 363.205085 1086.59343 0.0013103 4.7589E-07 0.27395 9.9499E-05 0.27526 9.9975E-05 363.20529768051233 18.024 0.21294 18.03 17.921 18.134 0.0060482 34 13 3 0 0 0 0.64628 1 9107 9107 7.9454 2.8979 1 2971100 47234 3893 31748 32491 55211 55211 0.05359369802999936 PRGCGGPGEL 10 Unmodified _PRGCGGPGEL_ 0 0 0 ENST00000392381.7_1_3:197024090-197024929:-|nuORF ENST00000392381.7_1_3:197024090-197024929:-|nuORF ENST00000392381.7_1_3:197024090-197024929:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 471.7257690429688 2 471.726726 941.4389 NaN NaN NaN NaN NaN NaN NaN 25.74 1 22.789 22.289 23.289 -2.9511 0 0 0 0.83398 1 14113 14113 10.824 1.4765 1 47235 12671 31749 32492 55212 55212 -0.03416202673884072 PRGDSQAPLR 10 Unmodified _PRGDSQAPLR_ 0 0 0 ENST00000594545.5_1_19:14672893-14674061:+|nuORF ENST00000594545.5_1_19:14672893-14674061:+|nuORF ENST00000594545.5_1_19:14672893-14674061:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.224609375 3 366.200111 1095.5785 NaN NaN NaN NaN NaN NaN NaN 15.456 1 15.462 14.962 15.962 0.0057774 0 0 0 0.97855 1 7703 7703 1.4551 0.49284 1 47236 15749 31750 32493 55213 55213 0.034538779349986726 PRGFARGL 8 Unmodified _PRGFARGL_ 0 0 0 ENSG00000122565|ENST00000396386|CBX3;ENSG00000108468|ENST00000225603|CBX1 ENSG00000122565|ENST00000396386|CBX3 ENSG00000122565|ENST00000396386|CBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.256103515625 2 437.256311 872.49807 1.2862 0.00056239 -0.40352 -0.00017644 0.88266 0.00038595 437.25621447031267 20.682 0.36508 17.989 17.82 18.186 -2.693 39 23 2 0 0 0 0.21583 1 11034 11034 67.344 29.193 1 4052900 47237 2572 31751 32494 55214 55214 0.05672061402606232 PRGGRPCL 8 Unmodified _PRGGRPCL_ 0 0 0 REV__ENST00000469140.2_1_14:105933129-105933369:+|nuORF REV__ENST00000469140.2_1_14:105933129-105933369:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2357788085938 2 428.234522 854.45449 NaN NaN NaN NaN NaN NaN NaN 33.723 1 33.752 33.252 34.252 0.028934 0 0 0 0.95973 1 17752 17752 8.5933 0 1 + 47238 27462 31752 32495 55215 55215 0.02144128633813125 PRGHSKAL 8 Unmodified _PRGHSKAL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS AL20221201_MKP_PDAC_01 4 433.2537231445312 2 433.253769 864.492984 NaN NaN NaN NaN NaN NaN NaN 20.108 1 17.452 16.952 17.952 -2.6564 0 0 0 0.7268 1 10694 10694 26.884 0.54238 1 47239 6769 31753 32496 55216 55216 0.05531757539984028 PRGKGIRL 8 Unmodified _PRGKGIRL_ 0 0 0 ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENST00000480755.1_1_19:9793972-9794221:-|nuORF;ENST00000479057.1_1_17:560036-560321:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1;ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X ENST00000470671.1_1_X:71475533-71493153:-|nuORF;ENSG00000129824|ENST00000250784|RPS4Y1 ENSG00000129824|ENST00000250784|RPS4Y1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7915954589844 2 448.793061 895.571569 0.63916 0.00028685 -1.1184 -0.00050191 -0.4792 -0.00021506 448.7924841129889 27.186 0.38869 24.15 23.949 24.338 -3.0365 28 19 2 0 0 0 0.12393 2 15004 15004;15093 92.822 11.209 1 21641000 47240 4163;13855 31754 32497 55217;55218 55217 0.11960609845084491 PRGLHWCE 8 Unmodified _PRGLHWCE_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2395629882812 2 499.237261 996.45997 0.13082 6.5309E-05 4.1134 0.0020536 4.2442 0.0021189 499.2392805307189 31.25 0.20486 31.147 31.034 31.238 -0.10269 11 7 2 0 0 0 0.63229 1 16236 16236 23.148 1.6114 1 1480900 + 47241 29889 31755 32498 55219 55219 -0.03840192574375578 PRGPGNPL 8 Unmodified _PRGPGNPL_ 0 0 0 ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15 ENSG00000271321|ENST00000470691|CTAGE6 ENSG00000271321|ENST00000470691|CTAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.22705078125 2 404.22722 806.439886 -1.2071 -0.00048795 0.24987 0.000101 -0.95725 -0.00038695 404.22728531362 32.63 0.32976 32.63 32.481 32.811 0 49 17 4 0 0 0 0.5284 1 17119 17119 32.117 5.7757 1 109580000 47242 10883 31756 32499 55220 55220 0.02892379757327035 PRGPGNPL 8 Unmodified _PRGPGNPL_ 0 0 0 ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15 ENSG00000271321|ENST00000470691|CTAGE6 ENSG00000271321|ENST00000470691|CTAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2270812988281 2 404.22722 806.439886 -0.22194 -8.9714E-05 0.53236 0.00021519 0.31042 0.00012548 404.22740749005703 32.739 0.32796 32.582 32.409 32.737 -0.157 43 13 4 0 0 0 0.46494 2 17000 17000;17101 38.151 6.0342 1 66925000 47243 10883 31756 32499 55221;55222 55221 0.02892379757327035 PRGPGNPL 8 Unmodified _PRGPGNPL_ 0 0 0 ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15 ENSG00000271321|ENST00000470691|CTAGE6 ENSG00000271321|ENST00000470691|CTAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2279357910156 2 404.22722 806.439886 -0.31471 -0.00012721 0.93859 0.0003794 0.62388 0.00025219 404.2275416487134 32.573 0.23159 32.603 32.466 32.698 0.029743 15 8 3 0 0 0 0.61462 1 17096 17096 24.674 5.2349 1 3748800 47244 10883 31756 32499 55223 55223 0.02892379757327035 PRGPGNPL 8 Unmodified _PRGPGNPL_ 0 0 0 ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15 ENSG00000271321|ENST00000470691|CTAGE6 ENSG00000271321|ENST00000470691|CTAGE6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2272644042969 2 404.22722 806.439886 0.7187 0.00029052 0.14251 5.7607E-05 0.86121 0.00034812 404.22725028898725 36.578 0.65585 32.295 31.976 32.632 -4.2835 117 40 4 0 0 0 0.5284 3 21343 21225;21343;21467 32.117 5.7757 1 446530000 47245 10883 31756 32499 55224;55225;55226 55225 0.02892379757327035 PRGQVAQL 8 Unmodified _PRGQVAQL_ 0 0 0 REV__nc|ENSG00000102312|Q9H237-5|PORCN REV__nc|ENSG00000102312|Q9H237-5|PORCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7541809082031 2 434.753601 867.49265 1.001 0.00043517 -1.4597 -0.0006346 -0.45872 -0.00019943 434.7530700916182 38.22 0.29263 33.851 33.671 33.964 -4.3689 26 17 2 0 0 0 0.3408 1 22474 22474 50.855 4.8341 1 11694000 + 47246 18232 31757 32500 55227 55227 0.053603378201387386 PRGRYGDL 8 Unmodified _PRGRYGDL_ 0 0 0 REV__ENSG00000073067|ENST00000308919|CYP2W1 REV__ENSG00000073067|ENST00000308919|CYP2W1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2491455078125 2 467.248683 932.482814 0.48214 0.00022528 -1.7896 -0.00083617 -1.3074 -0.00061089 467.2494143824322 97.295 0.7702 97.295 96.913 97.683 0 181 36 6 0 0 0 0.80722 1 53613 53613 2.3027 0 1 38492000 + 47247 17531 31758 32501 55228 55228 0.013871498147409511 PRGRYGDL 8 Unmodified _PRGRYGDL_ 0 0 0 REV__ENSG00000073067|ENST00000308919|CYP2W1 REV__ENSG00000073067|ENST00000308919|CYP2W1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2486267089844 2 467.248683 932.482814 0.65537 0.00030622 -0.27946 -0.00013058 0.37591 0.00017565 467.24948044934075 101.79 0.38306 95.616 95.574 95.957 -6.1757 79 22 4 0 0 0 0.80676 1 68327 68327 2.5775 0 1 60049000 + 47248 17531 31758 32501 55229 55229 0.013871498147409511 PRGSIPRSL 9 Unmodified _PRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7932739257812 2 491.793258 981.571963 0.088326 4.3438E-05 -0.20136 -9.9027E-05 -0.11303 -5.5588E-05 491.793053186267 36.278 0.20906 36.303 36.208 36.417 0.024967 15 8 2 0 0 0 0.0091809 1 19217 19217 84.522 19.287 1 2285100 47249 1177 31759 32502 55230 55230 0.08043984774269575 PRGSIPRSL 9 Unmodified _PRGSIPRSL_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7946166992188 2 491.793258 981.571963 1.2258 0.00060282 1.9097 0.00093918 3.1355 0.001542 491.7944712416813 40.91 0.33229 36.303 36.1 36.432 -4.6079 32 20 2 0 0 0 0.015688 1 24415 24415 67.838 2.6031 1 11304000 47250 1177 31759 32502 55231 55231 0.08043984774269575 PRGSRAHITL 10 Unmodified _PRGSRAHITL_ 0 0 0 ENST00000486438.1_1_17:40123824-40125939:+|nuORF;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP ENST00000486438.1_1_17:40123824-40125939:+|nuORF ENST00000486438.1_1_17:40123824-40125939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.884521484375 3 369.884235 1106.63087 0.18637 6.8935E-05 0.77987 0.00028846 0.96624 0.0003574 369.8845460348083 26.512 0.14225 26.539 26.425 26.567 0.026953 10 5 3 0 0 0 0.34249 1 13752 13752 21.799 0 1 3624200 47251 14185 31760 32503 55232 55232 0.08182461068599878 PRGTRLSP 8 Unmodified _PRGTRLSP_ 0 0 0 ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF ENST00000540691.5_2_19:18679489-18679762:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2590637207031 2 442.259051 882.503549 0.38142 0.00016869 -0.97716 -0.00043216 -0.59574 -0.00026347 442.25859652137154 18.736 0.2934 18.743 18.641 18.935 0.0060463 40 14 4 0 0 0 0.50364 1 9494 9494 34.402 3.1334 1 117070000 47252 15034 31761 32504 55233 55233 0.05759740194423557 PRGVRVAL 8 Unmodified _PRGVRVAL_ 0 0 0 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2804870605469 2 434.279786 866.54502 0.78743 0.00034196 0.16747 7.273E-05 0.9549 0.00041469 434.28002679020824 43.684 0.22977 38.919 38.755 38.985 -4.7648 17 13 2 0 0 0 0.37649 2 26568 26522;26568 46.921 8.7697 1 4109700 47253 10308 31762 32505 55234;55235 55235 0.10640920953744626 PRHGGFIL 8 Unmodified _PRHGGFIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000595368.5_1_19:39936232-39948556:+|nuORF;SUPT5H-SAMD4B|1|fusion;SUPT5H-SAMD4B|2|fusion nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7596435546875 2 448.758687 895.502821 0.65531 0.00029408 1.4496 0.00065052 2.1049 0.0009446 448.7593074823138 74.196 0.27295 74.196 74.045 74.318 0 23 13 2 0 0 0 0.80975 1 41328 41328 0.79363 0 1 664610 47254 9785 31763 32506 55236 55236 0.05088945545378465 PRHGGFIL 8 Unmodified _PRHGGFIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000595368.5_1_19:39936232-39948556:+|nuORF;SUPT5H-SAMD4B|1|fusion;SUPT5H-SAMD4B|2|fusion nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7597961425781 2 448.758687 895.502821 0.83182 0.00037329 0.41586 0.00018662 1.2477 0.00055991 448.75885551229226 69.414 0.56003 69.445 69.051 69.611 0.030914 56 30 2 0 0 0 0.80676 1 37998 37998 2.5775 0 1 15212000 47255 9785 31763 32506 55237 55237 0.05088945545378465 PRHGGFIL 8 Unmodified _PRHGGFIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000595368.5_1_19:39936232-39948556:+|nuORF;SUPT5H-SAMD4B|1|fusion;SUPT5H-SAMD4B|2|fusion nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 448.758687 895.502821 0.64556 0.0002897 1.1042 0.00049553 1.7498 0.00078523 448.75994124837297 74.616 0.23408 74.14 73.997 74.231 -0.47588 0.019118 -0.00042785 NaN 0.79363 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 359640 47256 9785 31763 32506 0.05088945545378465 PRHGGFIL 8 Unmodified _PRHGGFIL_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000595368.5_1_19:39936232-39948556:+|nuORF;SUPT5H-SAMD4B|1|fusion;SUPT5H-SAMD4B|2|fusion nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.758687 895.502821 0.70317 0.00031555 1.7927 0.0008045 2.4959 0.00112 448.7594189028028 73.984 0.39371 74.028 73.864 74.258 0.043983 -0.093594 0.00019009 NaN 0.79363 37 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4548700 47257 9785 31763 32506 0.05088945545378465 PRHLFPPMT 9 Unmodified _PRHLFPPMT_ 0 0 0 REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8628540039062 3 365.863783 1094.56952 NaN NaN NaN NaN NaN NaN NaN 34.662 1 34.69 34.19 35.19 0.027401 0 0 0 0.67877 1 18285 18285 6.6304 3.3107 1 + 47258 27593 31764 32507 55238 55238 0.026018130449529053 PRHLFPPMT 9 Unmodified _PRHLFPPMT_ 0 0 0 REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8624572753906 3 365.863783 1094.56952 NaN NaN NaN NaN NaN NaN NaN 34.848 1 34.875 34.375 35.375 0.027401 0 0 0 0.67877 1 18392 18392 6.6304 3.3107 1 + 47259 27593 31764 32507 55239 55239 0.026018130449529053 PRHLFPPMT 9 Unmodified _PRHLFPPMT_ 0 0 0 REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF REV__ENST00000476328.1_1_5:125885615-125885732:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.8638610839844 3 365.863783 1094.56952 NaN NaN NaN NaN NaN NaN NaN 38.914 1 34.463 33.963 34.963 -4.4509 0 0 0 0.53226 1 23023 23023 10.151 1.995 1 + 47260 27593 31764 32507 55240 55240 0.026018130449529053 PRHRFEYF 8 Unmodified _PRHRFEYF_ 0 0 0 REV__nc|ENSG00000159398|Q6NT32-3|CES5A REV__nc|ENSG00000159398|Q6NT32-3|CES5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1938171386719 3 384.52968 1150.56721 NaN NaN NaN NaN NaN NaN NaN 17.071 1 17.071 16.571 17.571 0 0 0 0 0.97444 1 8382 8382 1.6526 1.1467 1 + 47261 21478 31765 32508 55241 55241 -0.0020489936848662182 PRHSEEGPDVF 11 Unmodified _PRHSEEGPDVF_ 0 0 0 REV__ENSG00000163083|ENST00000295228|INHBB REV__ENSG00000163083|ENST00000295228|INHBB MSMS AL20221201_MKP_PDAC_01 4 423.8662719726562 3 423.866798 1268.57856 NaN NaN NaN NaN NaN NaN NaN 11.978 1 9.4963 8.9963 9.9963 -2.482 0 0 0 0.94184 1 6035 6035 0.40827 0 1 + 47262 21724 31766 32509 55242 55242 -0.04498166855660202 PRHSKCMVKN 10 Unmodified _PRHSKCMVKN_ 0 0 0 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8746643066406 3 400.542715 1198.60632 -0.084558 -3.3869E-05 -3.7116 -0.0014867 -3.7962 -0.0015205 400.8751146448648 19.125 0.11278 19.133 19.063 19.176 0.0078487 8 5 2 0 0 0 0.71413 1 9712 9712 0.56317 0.1965 1 310010 47263 4778 31767 32510 55243 55243 0.01495741599228495 PRHSTVACPY 10 Unmodified _PRHSTVACPY_ 0 0 0 ENST00000328257.12_1_11:73965393-73965618:+|nuORF ENST00000328257.12_1_11:73965393-73965618:+|nuORF ENST00000328257.12_1_11:73965393-73965618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5170288085938 3 377.518564 1129.53386 -0.55653 -0.0002101 -2.0366 -0.00076885 -2.5931 -0.00097894 377.5176408723047 18.715 0.1389 18.738 18.645 18.784 0.023106 22 18 2 0 0 0 0.71276 1 9389 9389 0.62683 0.17231 1 556530 47264 11833 31768 32511 55244 55244 -0.025722692027102312 PRIGAALLSIL 11 Unmodified _PRIGAALLSIL_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2463684082031 3 375.24477 1122.71248 0.39269 0.00014736 1.7635 0.00066174 2.1562 0.00080909 375.2456712598162 48.105 0.23567 48.067 47.988 48.224 -0.038643 18 11 2 0 0 0 0.69509 1 25954 25954 4.7159 0 1 1275600 + 47265 23742 31769 32512 55245 55245 0.1560314370785818 PRIIKVLFT 9 Unmodified _PRIIKVLFT_ 0 0 0 ENSG00000176495|ENST00000641998|OR5AN1 ENSG00000176495|ENST00000641998|OR5AN1 ENSG00000176495|ENST00000641998|OR5AN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.9070434570312 3 362.905977 1085.6961 1.8848 0.000684 1.2718 0.00046153 3.1565 0.0011455 362.9063053366944 98.425 0.13161 92.249 92.176 92.308 -6.1757 20 8 3 0 0 0 0.58145 1 65273 65273 2.4985 0.41248 1 36846000 47266 8600 31770 32513 55246 55246 0.1566806254174935 PRIRLHVT 8 Unmodified _PRIRLHVT_ 0 0 0 ENST00000538466.5_1_6:111982788-111982917:-|nuORF ENST00000538466.5_1_6:111982788-111982917:-|nuORF ENST00000538466.5_1_6:111982788-111982917:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3121643066406 2 496.311618 990.608683 0.053923 2.6763E-05 -0.1677 -8.3232E-05 -0.11378 -5.6469E-05 496.3115268654815 37.545 0.33706 37.562 37.416 37.753 0.01704 47 16 4 0 0 0 0.79669 1 19895 19895 8.5933 3.3626 1 67098000 47267 15006 31771 32514 55247 55247 0.11300281390845157 PRIRLHVT 8 Unmodified _PRIRLHVT_ 0 0 0 ENST00000538466.5_1_6:111982788-111982917:-|nuORF ENST00000538466.5_1_6:111982788-111982917:-|nuORF ENST00000538466.5_1_6:111982788-111982917:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3127746582031 2 496.311618 990.608683 0.73838 0.00036647 -0.29582 -0.00014682 0.44257 0.00021965 496.31154454053757 42.187 0.46322 37.502 37.284 37.747 -4.6846 88 29 4 0 0 0 0.70294 1 25336 25336 16.942 4.4107 1 151100000 47268 15006 31771 32514 55248 55248 0.11300281390845157 PRKAKAHP 8 Unmodified _PRKAKAHP_ 0 0 0 ENST00000591762.1_1_17:74379311-74379452:+|nuORF ENST00000591762.1_1_17:74379311-74379452:+|nuORF ENST00000591762.1_1_17:74379311-74379452:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.7773742675781 2 452.777411 903.540269 -0.23823 -0.00010787 0.36479 0.00016517 0.12656 5.7301E-05 452.7774712610235 103.32 0.12615 103.27 103.21 103.34 -0.047928 10 4 3 0 0 0 0.80992 1 57380 57380 0.69038 0 1 38669000 47269 15709 31772 32515 55249 55249 0.08464036810983089 PRKAKAHP 8 Unmodified _PRKAKAHP_ 0 0 0 ENST00000591762.1_1_17:74379311-74379452:+|nuORF ENST00000591762.1_1_17:74379311-74379452:+|nuORF ENST00000591762.1_1_17:74379311-74379452:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 452.777411 903.540269 0.42585 0.00019281 2.2019 0.00099695 2.6277 0.0011898 452.77732603063794 103.29 0.06369 103.29 103.26 103.32 0 0.0076165 0.0016223 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 134850 47270 15709 31772 32515 0.08464036810983089 PRKEQAPL 8 Unmodified _PRKEQAPL_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7747192382812 2 469.774534 937.534515 1.0397 0.0004884 -0.31412 -0.00014757 0.72554 0.00034084 469.77448762468066 41.618 0.43177 37.01 36.788 37.22 -4.6079 40 28 2 0 0 0 0.67481 1 24965 24965 19.439 0.18201 1 21888000 47271 8450 31773 32516 55250 55250 0.06324893508644891 PRKEQAPL 8 Unmodified _PRKEQAPL_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.774534 937.534515 0.82584 0.00038796 0.17426 8.1863E-05 1.0001 0.00046982 469.77460388874425 36.727 0.22986 36.727 36.588 36.818 0 -0.18905 0.00012863 NaN 19.439 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1817600 47272 8450 31773 32516 0.06324893508644891 PRKEQAPL 8 Unmodified _PRKEQAPL_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 469.774534 937.534515 -0.18114 -8.5096E-05 0.49222 0.00023123 0.31108 0.00014614 469.7748719165717 37.282 0.30911 37.01 36.872 37.181 -0.27133 0.09448 0.00042737 NaN 19.439 24 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3892300 47273 8450 31773 32516 0.06324893508644891 PRKGEKVWT 9 Unmodified _PRKGEKVWT_ 0 0 0 REV__ENSG00000180043|ENST00000424985|GARIN5B REV__ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5438232421875 3 367.545219 1099.61383 1.7564 0.00064556 -0.76379 -0.00028073 0.99262 0.00036483 367.87918750185554 20.233 0.22966 17.54 17.494 17.723 -2.693 20 13 2 0 0 0 0.5029 1 10805 10805 4.5289 0 1 2724500 + 47274 23135 31774 32517 55251 55251 0.06800540462791105 PRKHKFAEEDL 11 Unmodified _PRKHKFAEEDL_ 0 0 0 nc|ENSG00000167074|Q10587-2|TEF;ENSG00000167074|ENST00000266304|TEF nc|ENSG00000167074|Q10587-2|TEF nc|ENSG00000167074|Q10587-2|TEF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.8927612304688 3 457.245609 1368.715 0.81419 0.00037228 -0.787 -0.00035985 0.027188 1.2432E-05 457.2457332373399 28.637 0.25206 25.489 25.34 25.592 -3.1482 15 12 2 0 0 0 0.30145 1 15977 15977 7.0371 1.9896 1 4227100 47275 7565 31775 32518 55252 55252 0.04538947374840063 PRKLVPQTI 9 Unmodified _PRKLVPQTI_ 0 0 0 REV__ENST00000554849.1_1_14:21464355-21465046:+|nuORF REV__ENST00000554849.1_1_14:21464355-21465046:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2265014648438 3 351.225598 1050.65496 1.8887 0.00066337 -0.94519 -0.00033197 0.94353 0.00033139 351.22529410176355 21.054 0.35816 18.361 18.205 18.563 -2.693 42 19 3 0 0 0 0.2546 1 11224 11224 19.362 4.1135 1 4606700 + 47276 22050 31776 32519 55253 55253 0.13166301502269562 PRKPQNRML 9 Unmodified _PRKPQNRML_ 0 0 0 ENST00000311528.9_1_16:89629370-89629583:+|nuORF ENST00000311528.9_1_16:89629370-89629583:+|nuORF ENST00000311528.9_1_16:89629370-89629583:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.5536193847656 3 380.55372 1138.63933 NaN NaN NaN NaN NaN NaN NaN 15.914 1 13.357 12.857 13.857 -2.557 0 0 0 0.84564 1 8207 8207 1.0715 0 1 47277 11691 31777 32520 55254 55254 0.07555691713582746 PRKQRLNWLHL 11 Unmodified _PRKQRLNWLHL_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.1195068359375 3 487.624755 1459.85244 1.5735 0.00076725 2.1098 0.0010288 3.6833 0.001796 487.626316936614 109.94 0.017227 103.76 103.75 103.77 -6.1757 6 4 2 0 0 0 0.30604 1 73392 73392 0.094841 0.021578 1 1652000 + 47278 29680 31778 32521 55255 55255 0.1409032076492167 PRKSLMTRI 9 Unmodified _PRKSLMTRI_ 0 0 0 REV__nc|ENSG00000114904|P51957-3|NEK4 REV__nc|ENSG00000114904|P51957-3|NEK4 MSMS AL20221201_MKP_PDAC_01 4 367.8892822265625 3 367.890221 1100.64883 NaN NaN NaN NaN NaN NaN NaN 25.873 1 22.922 22.422 23.422 -2.9511 0 0 0 0.25233 1 14200 14200 20.581 6.9661 1 + 47279 18941 31779 32522 55256 55256 0.10253459999103143 PRKSNVFLLA 10 Unmodified _PRKSNVFLLA_ 0 0 0 ENST00000540429.1_1_12:26646977-26648169:-|nuORF ENST00000540429.1_1_12:26646977-26648169:-|nuORF ENST00000540429.1_1_12:26646977-26648169:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2332763671875 3 382.232752 1143.67643 NaN NaN NaN NaN NaN NaN NaN 31.056 1 31.086 30.586 31.586 0.030106 0 0 0 0.99897 1 16256 16256 0.77653 0 1 47280 15030 31780 32523 55257 55257 0.11033686531004605 PRKSTKSGPL 10 Unmodified _PRKSTKSGPL_ 0 0 0 REV__ENST00000476534.1_1_2:97269891-97271381:-|nuORF;REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF REV__ENST00000597150.5_1_2:97261350-97297069:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2925415039062 2 535.819473 1069.62439 -0.046586 -2.4962E-05 -0.26119 -0.00013995 -0.30778 -0.00016491 535.8197364690864 38.142 0.21017 37.87 37.782 37.992 -0.27133 17 9 3 0 0 0 0.23412 1 20040 20040 9.3831 2.0939 1 1425500 + 47281 27596;18946 31781 32524 55258 55258 0.09236523117260731 PRLDREGAPW 10 Unmodified _PRLDREGAPW_ 0 0 0 ENST00000409190.7_1_1:33168597-33168690:-|nuORF ENST00000409190.7_1_1:33168597-33168690:-|nuORF ENST00000409190.7_1_1:33168597-33168690:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5444946289062 3 399.543878 1195.60981 0.66215 0.00026456 0.62709 0.00025055 1.2892 0.00051511 399.54411521826603 30.251 0.7046 30.171 29.841 30.546 -0.080429 84 26 5 0 0 0 0.24625 1 15723 15723 26.021 17.044 1 22897000 47282 12956 31782 32525 55259 55259 0.019824509690806735 PRLDREGAPW 10 Unmodified _PRLDREGAPW_ 0 0 0 ENST00000409190.7_1_1:33168597-33168690:-|nuORF ENST00000409190.7_1_1:33168597-33168690:-|nuORF ENST00000409190.7_1_1:33168597-33168690:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5440673828125 3 399.543878 1195.60981 0.65343 0.00026107 -0.016391 -6.5489E-06 0.63704 0.00025453 399.543780229631 33.031 0.57433 29.175 28.887 29.461 -3.8562 99 35 3 0 0 0 0.35903 1 19006 19006 20.581 5.6238 1 124040000 47283 12956 31782 32525 55260 55260 0.019824509690806735 PRLEFQNDFYR 11 Unmodified _PRLEFQNDFYR_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MSMS AL20221201_MKP_PDAC_01 4 495.5795288085938 3 495.58088 1483.72081 NaN NaN NaN NaN NaN NaN NaN 21.484 1 18.749 18.249 19.249 -2.7348 0 0 0 0.94165 1 11513 11513 1.3296 0.82369 1 47284 16507 31783 32526 55261 55261 -0.0016995411349398637 PRLERILL 8 Unmodified _PRLERILL_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.3057250976562 2 505.329476 1008.6444 1.0621 0.00053671 -0.25784 -0.0001303 0.80426 0.00040642 505.32945625185016 94.669 0.22052 88.493 88.372 88.592 -6.1757 24 12 2 0 0 0 8.7369 1 62749 62749 19.257 2.3147 1 14179000 47285 10851 31784 32527 55262 55262 0.14042318847839397 PRLETKSL 8 Unmodified _PRLETKSL_ 0 0 0 nc|ENSG00000091542|Q6P6C2-1|ALKBH5;nc|ENSG00000091542|Q6P6C2-3|ALKBH5;ENSG00000091542|ENST00000399138|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 nc|ENSG00000091542|Q6P6C2-1|ALKBH5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7838745117188 2 472.282192 942.549831 0.71617 0.00033824 0.40867 0.00019301 1.1248 0.00053124 472.28244352396814 28.633 0.25206 25.485 25.34 25.592 -3.1482 18 12 2 0 0 0 0.088981 1 16002 16002 103.42 38.184 1 8161300 47286 16074 31785 32528 55263 55263 0.07625760305836593 PRLGGHCL 8 Unmodified _PRLGGHCL_ 0 0 0 ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF;ENST00000461680.1_1_3:51673299-51697433:+|nuORF ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080|ENST00000684192|RAD54L2 MSMS AL20221201_MKP_PDAC_01 4 426.7277526855469 2 426.729072 851.443591 NaN NaN NaN NaN NaN NaN NaN 32.126 1 28.43 27.93 28.93 -3.6958 0 0 0 0.9249 1 18268 18268 15.768 3.2367 1 47287 7134 31786 32529 55264 55264 0.011927262595122556 PRLGHVFLR 9 Unmodified _PRLGHVFLR_ 0 0 0 ENST00000602421.5_1_1:39547131-39549904:+|nuORF ENST00000602421.5_1_1:39547131-39549904:+|nuORF ENST00000602421.5_1_1:39547131-39549904:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2114562988281 3 365.55757 1093.65088 -0.0060985 -2.2294E-06 -1.3722 -0.00050162 -1.3783 -0.00050385 365.55682485033253 33.484 0.16714 33.513 33.437 33.604 0.028934 10 7 2 0 0 0 0.21806 1 17597 17597 2.7352 0.99292 1 1408400 47288 15817 31787 32530 55265 55265 0.10780256799216659 PRLHDYDDQ 9 Unmodified _PRLHDYDDQ_ 0 0 0 REV__RHOD|p.R80H|1|0.17|ENSG00000173156|chr11:67066756-67066756|G/A|missense_variant REV__RHOD|p.R80H|1|0.17|ENSG00000173156|chr11:67066756-67066756|G/A|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.7331237792969 3 386.843993 1157.51015 1.1549 0.00044678 3.4456 0.0013329 4.6006 0.0017797 386.8456334288156 28.669 0.27674 25.521 25.38 25.656 -3.1482 16 13 2 0 0 0 0.21021 1 15940 15940 4.5289 1.5336 1 4911100 + 47289 30090 31788 32531 55266 55266 -0.06230411435512906 PRLLDTKL 8 Unmodified _PRLLDTKL_ 0 0 0 nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-4|PARN;nc|ENSG00000140694|O95453-3|PARN nc|ENSG00000140694|O95453-2|PARN nc|ENSG00000140694|O95453-2|PARN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.3008422851562 2 478.300384 954.586216 0.52044 0.00024893 -0.50563 -0.00024184 0.014809 7.083E-06 478.30005880746523 58.84 0.27317 58.779 58.607 58.88 -0.060719 20 13 2 0 0 0 0.33377 1 32049 32049 51.63 0 1 1414800 47290 5265 31789 32532 55267 55267 0.10710637202555517 PRLLHLPVL 9 Unmodified _PRLLHLPVL_ 0 0 0 ENST00000555617.5_1_14:74759536-74766325:-|nuORF;ENST00000469672.5_1_14:74762559-74769587:-|nuORF ENST00000555617.5_1_14:74759536-74766325:-|nuORF ENST00000555617.5_1_14:74759536-74766325:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.347412109375 2 529.347669 1056.68079 NaN NaN NaN NaN NaN NaN NaN 106.2 1 100.03 99.529 100.53 -6.1757 0 0 0 0.85737 1 71102 71102 0.6015 0 1 47291 13842 31790 32533 55268 55268 0.15471195744544275 PRLLHVYLP 9 Unmodified _PRLLHVYLP_ 0 0 0 ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8939208984375 3 369.89396 1106.66005 -0.18291 -6.7659E-05 0.77025 0.00028491 0.58734 0.00021725 369.89420096655766 51.278 0.45749 51.224 50.963 51.421 -0.053871 64 22 4 0 0 0 0.21643 1 27778 27778 21.537 6.2885 1 13111000 47292 15064 31791 32534 55269 55269 0.11098605364873038 PRLLHVYLP 9 Unmodified _PRLLHVYLP_ 0 0 0 ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF ENST00000543067.5_1_X:21392776-21393022:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8943786621094 3 369.89396 1106.66005 0.85241 0.0003153 -0.42745 -0.00015811 0.42496 0.00015719 369.8938144459429 56.261 0.3229 50.284 50.052 50.375 -5.9769 32 18 2 0 0 0 0.42049 1 35807 35807 11.495 0.6952 1 23475000 47293 15064 31791 32534 55270 55270 0.11098605364873038 PRLLRAPLS 9 Unmodified _PRLLRAPLS_ 0 0 0 REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.827392578125 2 511.827101 1021.63965 0.65255 0.00033399 -2.0742 -0.0010616 -1.4217 -0.00072764 511.8270533919011 35.58 0.44138 31.387 31.143 31.584 -4.1928 45 27 2 0 0 0 0.34999 1 20663 20663 14.838 3.198 1 17357000 + 47294 26209 31792 32535 55271 55271 0.12969434705075855 PRLLRAPLS 9 Unmodified _PRLLRAPLS_ 0 0 0 REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 511.827101 1021.63965 0.058804 3.0097E-05 0.064938 3.3237E-05 0.12374 6.3335E-05 511.8272759905999 31.691 0.23614 31.721 31.564 31.8 0.030106 0.16728 0.00036259 NaN 14.838 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2646100 + 47295 26209 31792 32535 0.12969434705075855 PRLLRAPLS 9 Unmodified _PRLLRAPLS_ 0 0 0 REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF REV__ENST00000375663.7_1_6:31763358-31763445:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 511.827101 1021.63965 0.65255 0.00033399 -2.0742 -0.0010616 -1.4217 -0.00072764 511.8270533919011 35.58 0.44138 31.387 31.143 31.584 -4.1928 -0.16728 -0.0018272 NaN 14.838 45 27 2 NaN NaN NaN NaN 0 NaN NaN 0 17357000 + 47296 26209 31792 32535 0.12969434705075855 PRLNSADRPM 10 Unmodified _PRLNSADRPM_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3009643554688 2 578.798214 1155.58188 -0.15646 -9.0557E-05 -0.32341 -0.00018719 -0.47987 -0.00027775 578.7978147410579 25.714 0.21313 22.763 22.609 22.822 -2.9511 17 11 2 0 0 0 5.0622E-05 1 14074 14074 118.81 80.637 1 5077600 47297 16471 31793 32536 55272 55272 0.010308047173339219 PRLPLAKLR 9 Unmodified _PRLPLAKLR_ 0 0 0 REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF REV__ENST00000498040.5_1_21:45148712-45148838:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.359375 2 532.358568 1062.70258 NaN NaN NaN NaN NaN NaN NaN 105.89 1 99.711 99.211 100.21 -6.1757 0 0 0 0.85798 1 70915 70915 0.52476 0 1 + 47298 27988 31794 32537 55273 55273 0.1737400049310054 PRLPPTVEII 10 Unmodified _PRLPPTVEII_ 0 0 0 ENSG00000163611|ENST00000295872|SPICE1;ENST00000496105.1_1_3:113169108-113212968:-|nuORF ENSG00000163611|ENST00000295872|SPICE1 ENSG00000163611|ENST00000295872|SPICE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.9010620117188 3 378.900891 1133.68084 0.16563 6.2758E-05 0.45323 0.00017173 0.61886 0.00023449 378.90090520398917 51.042 0.30421 50.988 50.842 51.147 -0.053871 34 14 3 0 0 0 0.40136 1 27605 27605 14.218 0 1 6521400 47299 7028 31795 32538 55274 55274 0.1193515095390012 PRLPPTVEII 10 Unmodified _PRLPPTVEII_ 0 0 0 ENSG00000163611|ENST00000295872|SPICE1;ENST00000496105.1_1_3:113169108-113212968:-|nuORF ENSG00000163611|ENST00000295872|SPICE1 ENSG00000163611|ENST00000295872|SPICE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.9017333984375 3 378.900891 1133.68084 1.4579 0.0005524 1.2453 0.00047186 2.7032 0.0010243 378.9009987911018 91.608 0.49112 85.433 85.059 85.55 -6.1757 63 26 3 0 0 0 0.40136 2 60482 60482;60609 23.801 5.9379 1 19800000 47300 7028 31795 32538 55275;55276 55275 0.1193515095390012 PRLQKIWK 8 Unmodified _PRLQKIWK_ 0 0 0 ENSG00000073849|ENST00000169298|ST6GAL1 ENSG00000073849|ENST00000169298|ST6GAL1 ENSG00000073849|ENST00000169298|ST6GAL1 MSMS AL20221201_MKP_PDAC_01 4 534.8374633789062 2 534.837468 1067.66038 NaN NaN NaN NaN NaN NaN NaN 106.28 1 100.1 99.604 100.6 -6.1757 0 0 0 0.97444 1 71148 71148 0.79363 0 1 47301 1115 31796 32539 55277 55277 0.12926025084743742 PRMSMAPVPAI 11 Unmodified _PRMSMAPVPAI_ 0 0 0 ENST00000305123.5_1_2:227662067-227662256:-|nuORF ENST00000305123.5_1_2:227662067-227662256:-|nuORF ENST00000305123.5_1_2:227662067-227662256:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5443725585938 3 390.543833 1168.60967 0.49412 0.00019298 0.58268 0.00022756 1.0768 0.00042054 390.5440787502619 23.69 0.44443 20.863 20.613 21.058 -2.8273 61 26 3 0 0 0 0.56638 1 12876 12876 10.315 4.4471 1 28528000 47302 11611 31797 32540 55278 55278 0.03210991653236306 PRNDFGNFF 9 Unmodified _PRNDFGNFF_ 0 0 0 ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant;ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000571676.5_1_16:11858892-11864657:-|nuORF ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant ZC3H7A|p.V711Cfs*6|1|0.07|ENSG00000122299|chr16:11761992-11761992|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2606201171875 2 557.259248 1112.50394 0.43515 0.00024249 1.4047 0.00078277 1.8398 0.0010253 557.259922157669 85.357 0.26554 85.357 85.218 85.484 0 16 10 2 0 0 0 0.59218 1 47320 47320 1.8442 0 1 302750 47303 3629 31798 32541 55279 55279 -0.04780884876390701 PRNMDLYY 8 Unmodified _PRNMDLYY_ 0 0 0 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.5556030273438 3 357.835782 1070.48552 1.8252 0.00065312 -0.32978 -0.00011801 1.4954 0.00053512 357.83583029539466 21.722 0.25894 18.987 18.863 19.122 -2.7348 27 13 3 0 0 0 8.7369 1 11675 11675 1.4819 0.51963 1 2322200 47304 7237 31799 32542 55280 55280 -0.04690762842596996 PRNSCEAP 8 Unmodified _PRNSCEAP_ 0 0 0 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 nc|ENSG00000008735|Q13387-3|MAPK8IP2 MSMS AL20221201_MKP_PDAC_01 4 437.1993713378906 2 437.197802 872.381051 NaN NaN NaN NaN NaN NaN NaN 42.017 1 37.332 36.832 37.832 -4.6846 0 0 0 0.95607 1 25322 25322 9.3474 2.9933 1 47305 16015 31800 32543 55281 55281 -0.0602446459931798 PRNTAGVV 8 Unmodified _PRNTAGVV_ 0 0 0 REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B REV__nc|ENSG00000171763|Q9BVQ7-3|AFG2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 407.5474548339844 2 407.232502 812.450451 1.2791 0.00052089 0.30976 0.00012614 1.5888 0.00064703 407.23257806526226 20.645 0.30377 17.952 17.762 18.065 -2.693 30 18 2 0 0 0 8.7369 1 11018 11018 7.2892 0 1 2706200 + 47306 22598 31801 32544 55282 55282 0.036723624117598774 PRPAKACT 8 Unmodified _PRPAKACT_ 0 0 0 REV__ENST00000321867.5_1_12:132406822-132407029:+|nuORF REV__ENST00000321867.5_1_12:132406822-132407029:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2284851074219 2 422.228905 842.443257 NaN NaN NaN NaN NaN NaN NaN 64.678 1 64.678 64.178 65.178 0 0 0 0 0.97444 1 36073 36073 0.69038 0 1 + 47307 25517 31802 32545 55283 55283 0.015733065396602797 PRPASGPIRP 10 Unmodified _PRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3052368164062 2 524.306532 1046.59851 0.07772 4.0749E-05 -0.56089 -0.00029408 -0.48317 -0.00025333 524.3061980056497 21.212 0.25528 21.226 21.031 21.287 0.013796 46 34 2 0 0 0 0.1028 1 10801 10801 46.022 3.7098 1 2979700 47308 7624 31803 32546 55284 55284 0.07707673665595394 PRPASGPIRP 10 Unmodified _PRPASGPIRP_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000563749.1_1_16:89627605-89627911:+|nuORF;ENST00000399461.8_1_16:89627605-89629447:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3065185546875 2 524.306532 1046.59851 0.27617 0.0001448 0.017607 9.2316E-06 0.29378 0.00015403 524.3065318929898 23.866 0.40468 21.038 20.844 21.248 -2.8273 45 24 2 0 0 0 0.014262 1 12997 12997 80.896 13.815 1 8765100 47309 7624 31803 32546 55285 55285 0.07707673665595394 PRPASGPPRL 10 Unmodified _PRPASGPPRL_ 0 0 0 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 ENSG00000175707|ENST00000320567|KDF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3065795898438 2 524.306532 1046.59851 0.27617 0.0001448 0.017607 9.2316E-06 0.29378 0.00015403 524.3065318929898 23.866 0.40468 21.038 20.844 21.248 -2.8273 45 24 2 0 0 0 0.078417 1 12883 12883 51.488 3.4152 1 8765100 47310 8537 31804 32547 55286 55286 0.07707673665595394 PRPAWRPH 8 Unmodified _PRPAWRPH_ 0 0 0 ENST00000315422.8_1_11:64577237-64577864:-|nuORF ENST00000315422.8_1_11:64577237-64577864:-|nuORF ENST00000315422.8_1_11:64577237-64577864:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.7811584472656 2 508.780485 1015.54642 NaN NaN NaN NaN NaN NaN NaN 21.224 1 18.531 18.031 19.031 -2.693 0 0 0 0.95973 1 11342 11342 8.5933 1.304 1 47311 11731 31805 32548 55287 55287 0.03926555042505697 PRPDRLVNRL 10 Unmodified _PRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5827026367188 3 412.582556 1234.72584 -0.33186 -0.00013692 0.80349 0.00033151 0.47163 0.00019458 412.5830301061616 30.976 0.41634 31.006 30.783 31.199 0.030104 45 17 4 0 0 0 0.091475 2 16266 16155;16266 48.561 27.98 1 7082200 47312 401 31806 32549 55288;55289 55289 0.1178639453978576 PRPDRLVNRL 10 Unmodified _PRPDRLVNRL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5832214355469 3 412.582556 1234.72584 0.87079 0.00035927 1.0661 0.00043987 1.9369 0.00079914 412.5825832108481 35.269 0.30838 31.174 31.041 31.349 -4.0951 48 18 3 0 0 0 0.036856 1 20391 20391 64.692 30.87 1 16898000 47313 401 31806 32549 55290 55290 0.1178639453978576 PRPDSRHHSL 10 Unmodified _PRPDSRHHSL_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2116088867188 3 401.21101 1200.6112 0.27121 0.00010881 0.4525 0.00018155 0.72371 0.00029036 401.2110956076564 14.452 0.095343 11.949 11.903 11.998 -2.5029 34 15 3 0 0 0 0.30604 1 7335 7335 27.129 13.61 1 6912300 47314 8039 31807 32550 55291 55291 0.01892085057852455 PRPGKAAF 8 Unmodified _PRPGKAAF_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2462768554688 2 422.245412 842.476272 NaN NaN NaN NaN NaN NaN NaN 23.955 1 23.976 23.476 24.476 0.021185 0 0 0 0.95607 1 12348 12348 9.3474 0.75416 1 47315 4024 31808 32551 55292 55292 0.048732566540252265 PRPGRRPCCC 10 Unmodified _PRPGRRPCCC_ 0 0 0 ENST00000332290.3_1_6:170102517-170102613:+|nuORF ENST00000332290.3_1_6:170102517-170102613:+|nuORF ENST00000332290.3_1_6:170102517-170102613:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2382507324219 3 382.181012 1143.52121 -0.2641 -0.00010093 -1.924 -0.00073531 -2.1881 -0.00083624 382.1803820889694 36.938 0.18923 36.96 36.816 37.005 0.021545 13 8 2 0 0 0 0.23609 1 19540 19540 8.4443 2.2525 1 922210 47316 11870 31809 32552 55293 55293 -0.04481327138228153 PRPIPGCPV 9 Unmodified _PRPIPGCPV_ 0 0 0 REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2602233886719 2 468.260205 934.505857 -0.58653 -0.00027465 0.77038 0.00036074 0.18385 8.6088E-05 468.2605103539939 15.174 0.34232 15.16 15.027 15.369 -0.014066 178 119 2 0 0 0 0.49272 1 7536 7536 7.9102 2.1497 1 1167100 + 47317 29326 31810 32553 55294 55294 0.03598452607877789 PRPIPGCPV 9 Unmodified _PRPIPGCPV_ 0 0 0 REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF REV__ENST00000608290.1_1_22:46410950-46411199:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2609558105469 2 468.260205 934.505857 NaN NaN NaN NaN NaN NaN NaN 15.022 1 15.007 14.507 15.507 -0.014067 0 0 0 0.82739 1 7347 7347 4.3292 0 1 + 47318 29326 31810 32553 55295 55295 0.03598452607877789 PRPLLLRQLLT 11 Unmodified _PRPLLLRQLLT_ 0 0 0 REV__ENST00000379103.7_1_17:26206329-26206470:-|nuORF REV__ENST00000379103.7_1_17:26206329-26206470:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 660.4263916015625 2 660.429722 1318.84489 NaN NaN NaN NaN NaN NaN NaN 103.77 1 97.59 97.09 98.09 -6.1757 0 0 0 0.94307 1 69543 69543 0.30703 0 1 + 47319 26278 31811 32554 55296 55296 0.19822168444625277 PRPLLLSHF 9 Unmodified _PRPLLLSHF_ 0 0 0 ENST00000235307.6_1_1:184356213-184476760:+|nuORF ENST00000235307.6_1_1:184356213-184476760:+|nuORF ENST00000235307.6_1_1:184356213-184476760:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.8593139648438 3 360.550193 1078.62875 1.4275 0.00051468 -4.0942 -0.0014762 -2.6667 -0.0009615 360.8819721809853 28.602 0.17591 25.454 25.358 25.534 -3.1482 11 8 2 0 0 0 0.21404 1 15950 15950 1.0715 0 1 8962500 47320 11082 31812 32555 55297 55297 0.09258032330785682 PRPLRCVRKKL 11 Unmodified _PRPLRCVRKKL_ 0 0 0 REV__ENSG00000254126|ENST00000643224|CD8B2 REV__ENSG00000254126|ENST00000643224|CD8B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.9599609375 3 455.958969 1364.85508 0.24231 0.00011048 0.53592 0.00024436 0.77823 0.00035484 456.2931032419244 16.413 0.5555 13.856 13.519 14.075 -2.557 124 83 2 0 0 0 0.73114 1 8571 8571 1.3296 0.82369 1 3643600 + 47321 24519 31813 32556 55298 55298 0.18724452898231903 PRPPHPPELL 10 Unmodified _PRPPHPPELL_ 0 0 0 ENST00000519161.1_1_7:143056725-143059696:-|nuORF ENST00000519161.1_1_7:143056725-143059696:-|nuORF ENST00000519161.1_1_7:143056725-143059696:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8893737792969 3 384.888986 1151.64513 0.86571 0.0003332 0.28174 0.00010844 1.1474 0.00044164 384.8888847361925 46.337 0.37066 46.303 46.139 46.51 -0.033421 57 17 4 0 0 0 0.56675 1 25007 25007 12.873 0.63195 1 16661000 47322 14699 31814 32557 55299 55299 0.07537113496891834 PRPPMPKP 8 Unmodified _PRPPMPKP_ 0 0 0 REV__ENSG00000175220|ENST00000311956|ARHGAP1 REV__ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2637329101562 2 460.262748 918.510943 1.1599 0.00053386 0.61922 0.00028501 1.7791 0.00081887 460.26286065375785 20.264 0.87603 17.572 17.22 18.096 -2.693 89 55 2 0 0 0 0.52622 6 10853 10639;10741;10853;10951;11068;11083 32.305 12.532 1 8265900 + 47323 22853 31815 32558 55300;55301;55302;55303;55304;55305 55302 0.0484275647048662 PRPPMPKP 8 Unmodified _PRPPMPKP_ 0 0 0 REV__ENSG00000175220|ENST00000311956|ARHGAP1 REV__ENSG00000175220|ENST00000311956|ARHGAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.76513671875 2 460.262748 918.510943 1.1599 0.00053386 0.61922 0.00028501 1.7791 0.00081887 460.26286065375785 20.264 0.87603 17.572 17.22 18.096 -2.693 89 55 2 0 0 0 8.7369 1 11068 11068 7.9102 7.9102 1 8265900 + 47324 22853 31815 32558 55306 55306 0.0484275647048662 PRPRRRSWQLP 11 Unmodified _PRPRRRSWQLP_ 0 0 0 ENST00000302334.2_1_3:133169231-133185801:+|nuORF ENST00000302334.2_1_3:133169231-133185801:+|nuORF ENST00000302334.2_1_3:133169231-133185801:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.9642944335938 4 362.964097 1447.82728 0.82741 0.00030032 -0.24223 -8.792E-05 0.58518 0.0002124 362.96406740547144 15.269 0.21864 12.742 12.584 12.803 -2.5273 95 33 4 0 0 0 0.71938 1 7761 7761 2.4348 1.1051 1 18971000 47325 11578 31816 32559 55307 55307 0.12128265962383011 PRPTKSSF 8 Unmodified _PRPTKSSF_ 0 0 0 ENST00000401044.7_1_1:59134235-59156019:-|nuORF;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENSG00000162601|ENST00000472487|MYSM1 ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENST00000401044.7_1_1:59134235-59156019:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.25390625 2 460.253434 918.492316 0.18892 8.695E-05 0.90491 0.00041649 1.0938 0.00050344 460.25370259150435 23.507 0.22315 20.679 20.549 20.772 -2.8273 18 12 2 0 0 0 0.52066 1 12723 12723 32.786 0.4802 1 1740200 47326 6880 31817 32560 55308 55308 0.029809181002860896 PRPVLRAL 8 Unmodified _PRPVLRAL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.3031005859375 2 461.303262 920.59197 -0.08141 -3.7555E-05 0.078274 3.6108E-05 -0.0031363 -1.4468E-06 461.3033683520026 41.607 0.2578 41.605 41.422 41.68 -0.0017929 20 11 2 0 0 0 0.069468 1 22214 22214 123.1 52.381 1 12416000 47327 1536 31818 32561 55309 55309 0.12849780504882347 PRPVLRAL 8 Unmodified _PRPVLRAL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.3041687011719 2 461.303262 920.59197 0.70083 0.00032329 0.56342 0.00025991 1.2642 0.0005832 461.3035283474966 45.921 0.4023 40.966 40.774 41.176 -4.9549 55 26 3 0 0 0 0.079151 2 28210 28210;28348 109.63 35.233 1 33485000 47328 1536 31818 32561 55310;55311 55310 0.12849780504882347 PRPVLRALSF 10 Unmodified _PRPVLRALSF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MSMS AL20221201_MKP_PDAC_01 4 578.3539428710938 2 578.353483 1154.69241 NaN NaN NaN NaN NaN NaN NaN 91.505 1 85.33 84.83 85.83 -6.1757 0 0 0 0.098035 1 60489 60489 51.415 18.63 1 47329 1536 31819 32562 55312 55312 0.12125392767870835 PRPWNHMPH 9 Unmodified _PRPWNHMPH_ 0 0 0 REV__ENSG00000183631|ENST00000371125|PRR32 REV__ENSG00000183631|ENST00000371125|PRR32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.1914367675781 3 391.190782 1170.55052 0.5022 0.00019646 -1.8906 -0.0007396 -1.3885 -0.00054315 391.190279649304 23.897 0.31584 21.07 20.915 21.231 -2.8273 32 18 2 0 0 0 0.58145 1 12991 12991 2.4985 1.0166 1 5329600 + 47330 23361 31820 32563 55313 55313 -0.02793723526087888 PRQFAPRP 8 Unmodified _PRQFAPRP_ 0 0 0 REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF REV__ENST00000446789.2_1_13:113621986-113622999:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7760314941406 2 484.774868 967.535184 NaN NaN NaN NaN NaN NaN NaN 18.027 1 18.033 17.533 18.533 0.0060463 0 0 0 0.94061 1 9118 9118 12.532 0 1 + 47331 27146 31821 32564 55314 55314 0.05011732948366898 PRQGGKGA 8 Unmodified _PRQGGKGA_ 0 0 0 REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.7169799804688 2 385.717019 769.419485 0.028503 1.0994E-05 -0.82377 -0.00031774 -0.79527 -0.00030675 385.71670704477395 18.737 0.18056 18.743 18.658 18.839 0.0060463 15 8 2 0 0 0 0.74163 1 9516 9516 13.508 0 1 3314300 + 47332 29039 31822 32565 55315 55315 0.025552090975224928 PRQGGKGA 8 Unmodified _PRQGGKGA_ 0 0 0 REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.7176513671875 2 385.717019 769.419485 1.5264 0.00058874 -0.94353 -0.00036394 0.58282 0.0002248 385.7167297542616 20.177 0.55945 17.52 17.239 17.798 -2.6564 61 35 2 0 0 0 0.74163 1 10683 10683 13.508 0 1 18972000 + 47333 29039 31822 32565 55316 55316 0.025552090975224928 PRQGGKGA 8 Unmodified _PRQGGKGA_ 0 0 0 REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 385.717019 769.419485 -0.54589 -0.00021056 0.56918 0.00021954 0.023285 8.9815E-06 385.71737676873585 18.719 0.13276 18.742 18.66 18.793 0.023106 -0.00037446 0.00050201 NaN 13.508 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 501610 + 47334 29039 31822 32565 0.025552090975224928 PRQGGKGA 8 Unmodified _PRQGGKGA_ 0 0 0 REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF REV__ENST00000578273.5_1_17:79994901-79995568:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 385.717019 769.419485 0.028503 1.0994E-05 -0.82377 -0.00031774 -0.79527 -0.00030675 385.71670704477395 18.737 0.18056 18.743 18.658 18.839 0.0060463 0.00037446 -0.00057256 NaN 13.508 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3314300 + 47335 29039 31822 32565 0.025552090975224928 PRQGHTGDRK 10 Unmodified _PRQGHTGDRK_ 0 0 0 ENST00000546566.5_1_12:53439831-53440826:-|nuORF ENST00000546566.5_1_12:53439831-53440826:-|nuORF ENST00000546566.5_1_12:53439831-53440826:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3038330078125 2 576.305052 1150.59555 NaN NaN NaN NaN NaN NaN NaN 95.887 1 95.887 95.387 96.387 0 0 0 0 1.0009 1 52994 52994 0.30703 0 1 47336 15109 31823 32566 55317 55317 0.026277985407887172 PRQHVCVES 9 Unmodified _PRQHVCVES_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MSMS AL20221201_MKP_PDAC_01 4 352.1761169433594 3 352.174797 1053.50256 NaN NaN NaN NaN NaN NaN NaN 15.051 1 12.524 12.024 13.024 -2.5273 0 0 0 0.84564 1 7691 7691 1.0715 0 1 47337 1684 31824 32567 55318 55318 -0.02204842236778859 PRQHVCVES 9 Unmodified _PRQHVCVES_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MSMS AL20221201_MKP_PDAC_01 4 352.1749267578125 3 352.174797 1053.50256 NaN NaN NaN NaN NaN NaN NaN 15.464 1 12.937 12.437 13.437 -2.5273 0 0 0 0.84564 1 7935 7935 1.0715 0 1 47338 1684 31824 32567 55319 55319 -0.02204842236778859 PRQPAQHNKMA 11 Unmodified _PRQPAQHNKMA_ 0 0 0 ENST00000373865.6_2_9:123837189-123837279:+|nuORF ENST00000373865.6_2_9:123837189-123837279:+|nuORF ENST00000373865.6_2_9:123837189-123837279:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.8904724121094 3 426.555901 1276.64587 0.17187 7.3313E-05 0.51379 0.00021916 0.68566 0.00029247 426.55614110645536 33.893 0.33399 33.922 33.769 34.103 0.028934 35 14 3 0 0 0 0.67477 1 17824 17824 6.6235 0.43161 1 10827000 47339 12426 31825 32568 55320 55320 0.018615848742683738 PRQPPMSL 8 Oxidation (M) _PRQPPM(Oxidation (M))SL_ PRQPPM(1)SL PRQPPM(75)SL 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 471.2474975585938 2 471.247295 940.480036 NaN NaN NaN NaN NaN NaN NaN 25.936 1 22.985 22.485 23.485 -2.9511 0 0 0 0.25425 1 14236 14236 74.929 32.834 1 47340 8706 31826 32569 55321 55321 1472 0.00741558365587025 PRQPPMSL 8 Oxidation (M) _PRQPPM(Oxidation (M))SL_ PRQPPM(1)SL PRQPPM(56)SL 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 471.2472229003906 2 471.247295 940.480036 NaN NaN NaN NaN NaN NaN NaN 26.554 1 23.603 23.103 24.103 -2.9511 0 0 0 0.38147 1 14647 14647 56.177 19.711 1 47341 8706 31826 32569 55322 55322 1472 0.00741558365587025 PRQPSATRL 9 Unmodified _PRQPSATRL_ 0 0 0 ENST00000480182.1_1_2:130940128-130948196:+|nuORF;ENSG00000173272|ENST00000309451|MZT2A;ENSG00000152082|ENST00000281871|MZT2B;ENST00000410036.2_1_2:132241636-132250313:-|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF ENST00000480182.1_1_2:130940128-130948196:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2972412109375 2 513.296165 1024.57778 0.38503 0.00019763 2.4001 0.0012319 2.7851 0.0014296 513.2974325168387 27.186 0.28644 24.15 23.932 24.219 -3.0365 19 14 2 0 0 0 0.0085857 1 15018 15018 100.71 28.786 1 20013000 47342 6161 31827 32570 55323 55323 0.06647083285952249 PRQQQRLAA 9 Unmodified _PRQQQRLAA_ 0 0 0 REV__ENST00000475502.1_1_3:147108969-147110094:-|nuORF REV__ENST00000475502.1_1_3:147108969-147110094:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5404663085938 3 356.540468 1066.59957 1.2741 0.00045425 -2.3078 -0.00082282 -1.0337 -0.00036856 356.53909062131817 29.617 0.099434 26.316 26.257 26.357 -3.3016 7 5 2 0 0 0 0.34134 1 16638 16638 15.248 6.2722 1 32991000 + 47343 27575 31828 32571 55324 55324 0.06893888034505835 PRQVGVVV 8 Unmodified _PRQVGVVV_ 0 0 0 ENST00000465651.1_1_1:205561255-205569586:+|nuORF ENST00000465651.1_1_1:205561255-205569586:+|nuORF ENST00000465651.1_1_1:205561255-205569586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2666015625 2 427.266345 852.518136 -0.29401 -0.00012562 0.87515 0.00037392 0.58113 0.0002483 427.26674029336766 37.011 0.24944 36.761 36.644 36.894 -0.2497 16 10 2 0 0 0 0.74163 1 19460 19460 13.508 0 1 1507200 47344 13738 31829 32572 55325 55325 0.08597812342577527 PRRADHPE 8 Unmodified _PRRADHPE_ 0 0 0 ENST00000407315.5_1_2:242524111-242541371:-|nuORF ENST00000407315.5_1_2:242524111-242541371:-|nuORF ENST00000407315.5_1_2:242524111-242541371:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 489.2489013671875 2 489.249215 976.483876 NaN NaN NaN NaN NaN NaN NaN 103.24 1 97.063 96.563 97.563 -6.1757 0 0 0 0.97444 1 69232 69232 2.5775 0 1 47345 12940 31830 32573 55326 55326 -0.0053063581634660295 PRRAYYIYS 9 Unmodified _PRRAYYIYS_ 0 0 0 ENSG00000184557|ENST00000330871|SOCS3 ENSG00000184557|ENST00000330871|SOCS3 ENSG00000184557|ENST00000330871|SOCS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8775634765625 3 396.876857 1187.60874 NaN NaN NaN NaN NaN NaN NaN 19.834 1 19.842 19.342 20.342 0.0078487 0 0 0 0.84385 1 10100 10100 2.2828 0.030046 1 47346 9268 31831 32574 55327 55327 0.022442366001769187 PRRESLLRGL 10 Unmodified _PRRESLLRGL_ 0 0 0 nc|ENSG00000181577|Q8N319|LINC03040 nc|ENSG00000181577|Q8N319|LINC03040 nc|ENSG00000181577|Q8N319|LINC03040 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5442199707031 3 399.578923 1195.71494 -0.18523 -7.4014E-05 0.585 0.00023375 0.39977 0.00015974 399.57913714597595 29.823 0.62662 29.854 29.674 30.3 0.030106 69 25 5 0 0 0 0.23966 1 15685 15685 3.3196 0.58445 1 145620000 47347 16431 31832 32575 55328 55328 0.12490992165521675 PRRHPLPLLCS 11 Unmodified _PRRHPLPLLCS_ 0 0 0 ENST00000457861.1_1_7:935191-935371:+|nuORF ENST00000457861.1_1_7:935191-935371:+|nuORF ENST00000457861.1_1_7:935191-935371:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.3665771484375 2 644.868974 1287.72339 0.33818 0.00021808 -2.8726 -0.0018524 -2.5344 -0.0016344 644.8671803271237 71.396 0.49369 70.919 70.747 71.24 -0.47735 26 20 2 0 0 0 0.6889 1 39085 39085 5.2969 0.39987 1 627230 47348 13619 31833 32576 55329 55329 0.09104222810492502 PRRIGVTVWHH 11 Unmodified _PRRIGVTVWHH_ 0 0 0 ENST00000534987.5_1_11:71740313-71779161:-|nuORF ENST00000534987.5_1_11:71740313-71779161:-|nuORF ENST00000534987.5_1_11:71740313-71779161:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.3818969726562 2 679.383637 1356.75272 NaN NaN NaN NaN NaN NaN NaN 14.774 1 14.78 14.28 15.28 0.0057774 0 0 0 0.94165 1 7339 7339 1.3295 0 1 47349 14963 31834 32577 55330 55330 0.08861503150978933 PRRKKRPPM 9 Unmodified _PRRKKRPPM_ 0 0 0 REV__ENST00000513800.5_1_4:52709342-52740935:+|nuORF REV__ENST00000513800.5_1_4:52709342-52740935:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.7208251953125 3 389.241476 1164.7026 0.48073 0.00018712 1.0843 0.00042206 1.565 0.00060918 389.2417589550903 58.679 0.36828 58.618 58.373 58.741 -0.060722 26 18 2 0 0 0 0.21889 1 31946 31946 0.26902 0.033176 1 2187400 + 47350 18650 31835 32578 55331 55331 0.12683677221480139 PRRRKPFFRHK 11 Unmodified _PRRRKPFFRHK_ 0 0 0 ENST00000397677.5_1_8:23103919-23103997:+|nuORF ENST00000397677.5_1_8:23103919-23103997:+|nuORF ENST00000397677.5_1_8:23103919-23103997:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 762.9605102539062 2 762.960378 1523.9062 NaN NaN NaN NaN NaN NaN NaN 79.141 1 79.196 78.696 79.696 0.05497 0 0 0 0.9435 1 43718 43718 0 0 1 47351 12828 31836 32579 55332 55332 0.1652053798727593 PRRRRRCPGRA 11 Unmodified _PRRRRRCPGRA_ 0 0 0 ENST00000254190.3_1_15:101791750-101792119:-|nuORF ENST00000254190.3_1_15:101791750-101792119:-|nuORF ENST00000254190.3_1_15:101791750-101792119:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.7879028320312 3 460.93745 1379.79052 NaN NaN NaN NaN NaN NaN NaN 21.109 1 18.416 17.916 18.916 -2.693 0 0 0 0.93984 1 11276 11276 2.6312 0 1 47352 11161 31837 32580 55333 55333 0.11581690864773009 PRRRRRRRRKR 11 Unmodified _PRRRRRRRRKR_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20221201_MKP_PDAC_01 4 825.183837890625 2 825.041422 1648.06829 NaN NaN NaN NaN NaN NaN NaN 27.627 1 24.591 24.091 25.091 -3.0365 0 0 0 0.9435 1 15326 15326 0 0 1 + 47353 29498 31838 32581 55334 55334 0.2701793951275704 PRRRRRRRRRE 11 Unmodified _PRRRRRRRRRE_ 0 0 0 ENST00000372324.5_1_1:44444922-44446927:+|nuORF;ENST00000497866.5_1_1:44444922-44446927:+|nuORF ENST00000372324.5_1_1:44444922-44446927:+|nuORF ENST00000372324.5_1_1:44444922-44446927:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 825.5139770507812 2 825.515237 1649.01592 NaN NaN NaN NaN NaN NaN NaN 98.85 1 92.675 92.175 93.175 -6.1757 0 0 0 0.9435 1 65654 65654 0 0 1 47354 12377 31839 32582 55335 55335 0.2173735637916252 PRRRRTRRTL 10 Unmodified _PRRRRTRRTL_ 0 0 0 ENST00000259818.7_1_6:3227772-3227856:-|nuORF ENST00000259818.7_1_6:3227772-3227856:-|nuORF ENST00000259818.7_1_6:3227772-3227856:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.4324340820312 2 684.431984 1366.84942 1.8594 0.0012726 -3.7538 -0.0025692 -1.8944 -0.0012966 684.4299269747631 104.58 0.11912 98.409 98.338 98.457 -6.1757 11 6 3 0 0 0 0.72247 1 70032 70032 0.40072 0.050084 1 18561000 47355 11219 31840 32583 55336 55336 0.18066490430783233 PRRRSPHTSM 10 Unmodified _PRRRSPHTSM_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8222045898438 2 612.822555 1223.63056 -0.15355 -9.4096E-05 -0.79356 -0.00048631 -0.94711 -0.00058041 612.82196006971 55.921 0.42965 55.852 55.705 56.134 -0.068741 65 22 4 0 0 0 0.27276 1 30350 30350 29.082 1.4528 1 72857000 + 47356 18194 31841 32584 55337 55337 0.027687180770954 PRRRSPHTSM 10 Unmodified _PRRRSPHTSM_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.82275390625 2 612.822555 1223.63056 0.35231 0.00021591 -0.40809 -0.00025009 -0.055779 -3.4182E-05 612.8221075082494 62.042 0.46323 55.867 55.693 56.156 -6.1757 39 26 2 0 0 0 0.27276 1 39985 39985 29.082 1.4528 1 23439000 + 47357 18194 31841 32584 55338 55338 0.027687180770954 PRRRSPHTSM 10 Unmodified _PRRRSPHTSM_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 612.822555 1223.63056 0.35231 0.00021591 -0.40809 -0.00025009 -0.055779 -3.4182E-05 612.8221075082494 62.042 0.46323 55.867 55.693 56.156 -6.1757 0.0074069 0.00034732 NaN 29.082 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 23439000 + 47358 18194 31841 32584 0.027687180770954 PRRVKREEQR 10 Unmodified _PRRVKREEQR_ 0 0 0 REV__ENST00000469195.5_3_6:35227251-35248837:+|nuORF REV__ENST00000469195.5_3_6:35227251-35248837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.3966674804688 2 677.394733 1352.77491 1.3332 0.00090308 0.79052 0.0005355 2.1237 0.0014386 677.3952382078493 91.621 0.73154 91.658 91.297 92.029 0.036507 35 26 2 0 0 0 0.72482 1 51002 51002 0.40072 0.093686 1 4129700 + 47359 27463 31842 32585 55339 55339 0.11263682828735 PRRWEMWD 8 Unmodified _PRRWEMWD_ 0 0 0 REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF REV__ENST00000489097.5_1_1:6527238-6527559:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2994384765625 2 588.274375 1174.5342 -0.60693 -0.00035704 -1.8597 -0.001094 -2.4666 -0.001451 588.273469924668 29.99 0.16928 29.99 29.867 30.036 0 16 7 3 0 0 0 8.7369 1 15506 15506 2.3027 0.4585 1 940420 + 47360 27853 31843 32586 55340 55340 -0.046088494828381954 PRRWRRRL 8 Unmodified _PRRWRRRL_ 0 0 0 REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2501220703125 3 399.251363 1194.73226 NaN NaN NaN NaN NaN NaN NaN 30.082 1 30.112 29.612 30.612 0.030106 0 0 0 0.96606 1 15722 15722 7.2892 0.65886 1 + 47361 26800 31844 32587 55341 55341 0.14268377281837274 PRRWWALWEWR 11 Unmodified _PRRWWALWEWR_ 0 0 0 REV__ENST00000465124.1_1_9:127634977-127635226:+|nuORF REV__ENST00000465124.1_1_9:127634977-127635226:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 821.9337158203125 2 821.431119 1640.84768 0.022553 1.8525E-05 1.5991 0.0013136 1.6217 0.0013321 821.4327069295191 71.002 0.24816 70.524 70.411 70.659 -0.47735 22 10 3 0 0 0 0.7453 1 38906 38906 0 0 1 958620 + 47362 27386 31845 32588 55342 55342 0.052894366221607925 PRSAKPAL 8 Unmodified _PRSAKPAL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2587280273438 2 420.25852 838.502486 0.86838 0.00036494 0.4961 0.00020849 1.3645 0.00057343 420.2587027065486 17.868 0.27838 15.282 15.161 15.439 -2.5866 58 22 3 0 0 0 0.50364 1 9329 9329 34.402 5.9149 1 18483000 47363 4412 31846 32589 55343 55343 0.07677525825499742 PRSDLCLVF 9 Unmodified _PRSDLCLVF_ 0 0 0 REV__ENST00000216962.8_1_20:25278045-25278231:+|nuORF REV__ENST00000216962.8_1_20:25278045-25278231:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.275390625 2 525.276052 1048.53755 0.03957 2.0785E-05 -1.1788 -0.00061917 -1.1392 -0.00059839 525.2753759088724 72.374 0.33795 72.415 72.256 72.594 0.041725 41 15 4 0 0 0 0.36964 1 39901 39901 13.906 2.2658 1 6791800 + 47364 24746 31847 32590 55344 55344 0.015224005711615973 PRSEEHFSL 9 Unmodified _PRSEEHFSL_ 0 0 0 REV__ENST00000470606.5_1_13:28000472-28009731:+|nuORF REV__ENST00000470606.5_1_13:28000472-28009731:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8493347167969 3 367.848967 1100.52507 1.4097 0.00051856 -0.56529 -0.00020794 0.84441 0.00031062 367.8488489033074 36.212 0.36523 32.019 31.802 32.168 -4.1928 46 21 3 0 0 0 0.20428 1 21106 21106 16.566 4.3911 1 12317000 + 47365 19326 31848 32591 55345 55345 -0.021169195675156516 PRSFHLRPL 9 Unmodified _PRSFHLRPL_ 0 0 0 REV__ENST00000257261.10_1_11:61583746-61605301:+|nuORF REV__ENST00000257261.10_1_11:61583746-61605301:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2018432617188 3 374.889209 1121.6458 0.011096 4.1598E-06 -0.21639 -8.1121E-05 -0.20529 -7.6961E-05 374.8890943091074 38.368 0.26543 38.081 37.93 38.196 -0.28687 16 11 2 0 0 0 0.20883 1 20150 20150 8.1555 0 1 1595100 + 47366 24926 31849 32592 55346 55346 0.08983952936591777 PRSFHLRPL 9 Unmodified _PRSFHLRPL_ 0 0 0 REV__ENST00000257261.10_1_11:61583746-61605301:+|nuORF REV__ENST00000257261.10_1_11:61583746-61605301:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 374.889209 1121.6458 1.2112 0.00045405 -3.487 -0.0013072 -2.2758 -0.00085317 375.22152516436694 43.122 0.046021 38.357 38.318 38.364 -4.7648 0.13807 -0.0036171 NaN 4.897 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 5089400 + 47367 24926 31849 32592 0.08983952936591777 PRSGHLLY 8 Unmodified _PRSGHLLY_ 0 0 0 ENSG00000164900|ENST00000297537|GBX1 ENSG00000164900|ENST00000297537|GBX1 ENSG00000164900|ENST00000297537|GBX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7623291015625 2 471.761426 941.5083 NaN NaN NaN NaN NaN NaN NaN 17.709 1 17.723 17.223 18.223 0.013865 0 0 0 0.97444 1 8826 8826 2.8892 0 1 47368 7260 31850 32593 55347 55347 0.035206243371817436 PRSGKPAEL 9 Unmodified _PRSGKPAEL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53259774-53260053:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7733764648438 2 477.771991 953.529429 1.2088 0.00057752 0.24981 0.00011935 1.4586 0.00069688 477.77219792144604 20.615 0.33855 17.922 17.742 18.08 -2.693 34 20 2 0 0 0 0.015688 1 10945 10945 67.838 15.57 1 3429400 47369 7097 31851 32594 55348 55348 0.05080589646024691 PRSIDVKY 8 Unmodified _PRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2745971679688 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 41.75 1 41.443 40.943 41.943 -0.30682 0 0 0 0.25755 1 22139 22139 71.922 37.82 1 47370 2429 31852 32595 55349 55349 0.04497473788808293 PRSIDVKY 8 Unmodified _PRSIDVKY_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MSMS AL20221201_MKP_PDAC_01 4 489.27490234375 2 489.274367 976.53418 NaN NaN NaN NaN NaN NaN NaN 46.475 1 41.394 40.894 41.894 -5.0805 0 0 0 0.22104 1 28713 28713 81.89 39.796 1 47371 2429 31852 32595 55350 55350 0.04497473788808293 PRSIGRFC 8 Unmodified _PRSIGRFC_ 0 0 0 nc|ENSG00000105855|P26012-2|ITGB8;ENSG00000105855|ENST00000222573|ITGB8 nc|ENSG00000105855|P26012-2|ITGB8 nc|ENSG00000105855|P26012-2|ITGB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2476806640625 2 468.247629 934.480705 1.1693 0.00054754 -1.7359 -0.00081281 -0.56653 -0.00026528 468.24680064305625 37.611 0.39895 33.242 33.001 33.4 -4.3689 59 23 3 0 0 0 0.27285 2 21990 21990;22123 58.679 18.721 1 30712000 47372 2372 31853 32596 55351;55352 55351 0.010843978053003411 PRSKALEV 8 Unmodified _PRSKALEV_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2698059082031 2 450.269084 898.523616 0.010572 4.7604E-06 -0.34111 -0.00015359 -0.33054 -0.00014883 450.269075558895 23.311 0.22528 23.311 23.202 23.427 0 23 10 3 0 0 0 0.52066 1 11880 11880 32.786 0.4802 1 1100900 47373 9767 31854 32597 55353 55353 0.07029491134380805 PRSKRQESFK 10 Unmodified _PRSKRQESFK_ 0 0 0 ENST00000399021.2_1_10:126556549-126556830:+|nuORF ENST00000399021.2_1_10:126556549-126556830:+|nuORF ENST00000399021.2_1_10:126556549-126556830:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.0598754882812 3 421.570316 1261.68912 1.4595 0.00061526 -0.081728 -3.4454E-05 1.3777 0.00058081 421.57030552150445 20.843 0.33294 18.15 17.988 18.321 -2.693 40 19 3 0 0 0 0.23661 1 11209 11209 2.8433 1.8297 1 4279000 47374 12861 31855 32598 55354 55354 0.06874097923218869 PRSLPPGSSL 10 Unmodified _PRSLPPGSSL_ 0 0 0 REV__ENST00000586099.1_1_17:33687214-33689981:-|nuORF REV__ENST00000586099.1_1_17:33687214-33689981:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7853088378906 2 505.785099 1009.55564 NaN NaN NaN NaN NaN NaN NaN 40.081 1 39.784 39.284 40.284 -0.29716 0 0 0 0.27319 1 21172 21172 38.615 2.5706 1 + 47375 22667 31856 32599 55355 55355 0.051248588175326404 PRSLSWLASRL 11 Unmodified _PRSLSWLASRL_ 0 0 0 ENST00000561859.5_1_16:23555925-23568664:-|nuORF ENST00000561859.5_1_16:23555925-23568664:-|nuORF ENST00000561859.5_1_16:23555925-23568664:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.5852966308594 3 429.250695 1284.73025 0.32395 0.00013906 0.11426 4.9044E-05 0.43821 0.0001881 429.5849468027779 58.039 0.34357 52.012 51.888 52.231 -6.0275 27 18 2 0 0 0 0.29175 1 37194 37194 17.572 0 1 21062000 47376 15333 31857 32600 55356 55356 0.09927858962691971 PRSNLCRGVHI 11 Unmodified _PRSNLCRGVHI_ 0 0 0 REV__nc|ENSG00000229907|A8MXU0|DEFB108A REV__nc|ENSG00000229907|A8MXU0|DEFB108A MSMS AL20221201_MKP_PDAC_01 4 417.845947265625 3 417.896146 1250.66661 NaN NaN NaN NaN NaN NaN NaN 20.732 1 18.039 17.539 18.539 -2.693 0 0 0 0.93933 1 11057 11057 1.2148 0.021489 1 + 47377 29957 31858 32601 55357 55357 0.051301752539529843 PRSPDHVL 8 Unmodified _PRSPDHVL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.21044921875 2 460.751059 919.487565 0.55492 0.00025568 0.76024 0.00035028 1.3152 0.00060596 460.75130371316015 17.848 0.20189 15.261 15.161 15.362 -2.5866 19 17 2 0 0 0 8.7369 1 9351 9351 7.2892 0 1 1563300 47378 4022 31859 32602 55358 55358 0.024600339575158614 PRSPDLSKTH 10 Unmodified _PRSPDLSKTH_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MSMS AL20221201_MKP_PDAC_01 4 569.3045654296875 2 569.304187 1136.59382 NaN NaN NaN NaN NaN NaN NaN 30.874 1 27.377 26.877 27.877 -3.497 0 0 0 0.45397 1 17453 17453 28.495 4.4739 1 + 47379 22437 31860 32603 55359 55359 0.03098744732187697 PRSPQPEL 8 Unmodified _PRSPQPEL_ 0 0 0 ENSG00000133246|ENST00000423345|PRAM1 ENSG00000133246|ENST00000423345|PRAM1 ENSG00000133246|ENST00000423345|PRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2525939941406 2 462.250892 922.48723 0.77146 0.00035661 1.3033 0.00060244 2.0747 0.00095905 462.2518121022847 32.662 0.28681 28.806 28.618 28.904 -3.8562 22 14 2 0 0 0 0.58039 1 18611 18611 27.629 3.6082 1 10954000 47380 4500 31861 32604 55360 55360 0.022886142376592034 PRSSLRVL 8 Unmodified _PRSSLRVL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2900085449219 2 464.290351 926.566149 0.01622 7.5309E-06 0.72555 0.00033687 0.74178 0.0003444 464.29069516651725 29.999 0.31158 30.029 29.921 30.233 0.030104 24 12 3 0 0 0 0.42686 1 15664 15664 41.84 7.4379 1 2480500 47381 9729 31862 32605 55361 55361 0.09992886262625689 PRSSLRVL 8 Unmodified _PRSSLRVL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20221201_MKP_PDAC_01 4 464.2901000976562 2 464.290351 926.566149 NaN NaN NaN NaN NaN NaN NaN 33.46 1 29.475 28.975 29.975 -3.9853 0 0 0 0.48284 1 19189 19189 41.84 7.4379 1 47382 9729 31862 32605 55362 55362 0.09992886262625689 PRSSQNRPL 9 Unmodified _PRSSQNRPL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.1965942382812 3 352.19659 1053.56794 -0.071373 -2.5137E-05 1.7377 0.000612 1.6663 0.00058686 352.19711309587706 16.37 0.11938 16.375 16.317 16.436 0.0050564 12 7 2 0 0 0 0.59218 1 8218 8218 0.96228 0 1 529190 + 47383 29057 31863 32606 55363 55363 0.04329895280579876 PRSSTSDECL 10 Unmodified _PRSSTSDECL_ 0 0 0 REV__ENSG00000120278|ENST00000696526|PLEKHG1 REV__ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7437133789062 2 547.74277 1093.47099 0.7189 0.00039377 1.4854 0.00081361 2.2043 0.0012074 547.7432543382587 60.353 0.66256 60.353 59.983 60.646 0 83 29 4 0 0 0 0.60623 1 33573 33573 10.824 0.64053 1 4958800 + 47384 19235 31864 32607 55364 55364 -0.07200879781407821 PRSSTSDECL 10 Unmodified _PRSSTSDECL_ 0 0 0 REV__ENSG00000120278|ENST00000696526|PLEKHG1 REV__ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7438354492188 2 547.74277 1093.47099 -0.39016 -0.00021371 1.2963 0.00071004 0.90615 0.00049634 547.7432515992049 61.006 0.46537 60.516 60.332 60.798 -0.48932 35 22 2 0 0 0 0.50944 1 33289 33289 15.847 1.9411 1 5968500 + 47385 19235 31864 32607 55365 55365 -0.07200879781407821 PRTRLQLLRSW 11 Unmodified _PRTRLQLLRSW_ 0 0 0 ENST00000395491.6_1_17:21217545-21218022:+|nuORF ENST00000395491.6_1_17:21217545-21218022:+|nuORF ENST00000395491.6_1_17:21217545-21218022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.9533081054688 3 475.95276 1424.83645 0.48054 0.00022872 1.0589 0.00050398 1.5394 0.0007327 475.95286868074913 100.75 0.21516 100.71 100.63 100.84 -0.042152 16 7 3 0 0 0 0.74429 1 56004 56004 0.094841 0 1 1341300 47386 12772 31865 32608 55366 55366 0.1410261452801933 PRTSPKSVKF 10 Unmodified _PRTSPKSVKF_ 0 0 0 nc|ENSG00000108528|Q02978-2|SLC25A11;ENSG00000108528|ENST00000225665|SLC25A11;ENST00000574710.1_1_17:4843109-4843211:-|nuORF nc|ENSG00000108528|Q02978-2|SLC25A11 nc|ENSG00000108528|Q02978-2|SLC25A11 MSMS AL20221201_MKP_PDAC_01 4 382.8938293457031 3 382.892507 1145.65569 NaN NaN NaN NaN NaN NaN NaN 36.86 1 32.576 32.076 33.076 -4.2835 0 0 0 0.76313 1 21565 21565 12.175 8.2984 1 47387 2579 31866 32609 55367 55367 0.08869096151329359 PRVDAERAWE 10 Unmodified _PRVDAERAWE_ 0 0 0 REV__ENSG00000181085|ENST00000338033|MAPK15 REV__ENSG00000181085|ENST00000338033|MAPK15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2080383300781 3 410.207155 1227.59963 0.19489 7.9945E-05 0.2041 8.3725E-05 0.39899 0.00016367 410.20732326131036 24.933 0.44308 24.931 24.688 25.131 -0.0016766 29 18 2 0 0 0 0.57893 1 12687 12687 7.4771 0 1 12050000 + 47388 23188 31867 32610 55368 55368 -0.005061567561369884 PRVEDLKGAAL 11 Unmodified _PRVEDLKGAAL_ 0 0 0 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2279052734375 3 390.227667 1167.66117 0.79225 0.00030916 -0.28962 -0.00011302 0.50262 0.00019614 390.227609670832 27.294 0.47364 24.257 24.022 24.496 -3.0365 43 23 2 0 0 0 0.038431 1 15136 15136 37.251 0 1 34201000 47389 1271 31868 32611 55369 55369 0.08404774943142002 PRVGKIVM 8 Unmodified _PRVGKIVM_ 0 0 0 ENSG00000132746|ENST00000673966|ALDH3B2;ENST00000534425.5_1_11:67431830-67435009:-|nuORF;nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1 ENSG00000132746|ENST00000673966|ALDH3B2 ENSG00000132746|ENST00000673966|ALDH3B2 MSMS AL20221201_MKP_PDAC_01 4 450.2778015136719 2 450.278398 898.542243 NaN NaN NaN NaN NaN NaN NaN 34.522 1 30.427 29.927 30.927 -4.0951 0 0 0 0.63034 1 19911 19911 32.117 12.678 1 47390 4446 31869 32612 55370 55370 0.08891329504581336 PRVNQFWYKY 10 Unmodified _PRVNQFWYKY_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MSMS AL20221201_MKP_PDAC_01 4 467.5737915039062 3 467.575178 1399.70371 NaN NaN NaN NaN NaN NaN NaN 16.257 1 13.7 13.2 14.2 -2.557 0 0 0 1.0004 1 8409 8409 0.62683 0.12087 1 47391 1949 31870 32613 55371 55371 0.01984170071364133 PRVPSKVSAI 10 Unmodified _PRVPSKVSAI_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8858337402344 3 351.885353 1052.63423 0.050298 1.7699E-05 2.3658 0.0008325 2.4161 0.0008502 351.8857469593966 28.327 0.2789 28.356 28.188 28.467 0.029564 19 11 2 0 0 0 0.5012 1 14768 14768 16.275 9.2375 1 2135400 47392 5669 31871 32614 55372 55372 0.11001711122617053 PRVPSKVSAI 10 Unmodified _PRVPSKVSAI_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.88525390625 3 351.885353 1052.63423 1.729 0.00060841 1.8604 0.00065466 3.5894 0.0012631 351.88601036288316 32.238 0.31578 28.381 28.218 28.533 -3.8562 36 18 3 0 0 0 0.57918 1 18326 18326 12.228 2.9838 1 11847000 47393 5669 31871 32614 55373 55373 0.11001711122617053 PRVPTHTL 8 Unmodified _PRVPTHTL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7701110839844 2 460.769252 919.52395 1.4115 0.00065039 -0.41025 -0.00018903 1.0013 0.00046136 460.7689854458607 33.947 0.40305 29.962 29.747 30.15 -3.9853 35 21 2 0 0 0 0.076687 1 19556 19556 118.89 33.623 1 8753800 47394 4333 31872 32615 55374 55374 0.06096910854239468 PRVPTHTL 8 Unmodified _PRVPTHTL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 460.769252 919.52395 0.53138 0.00024484 0.24652 0.00011359 0.77789 0.00035843 460.7696379962351 30.17 0.12593 30.089 30.027 30.153 -0.080429 0.063571 0.00050232 NaN 118.89 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1192400 47395 4333 31872 32615 0.06096910854239468 PRVRARRPRLH 11 Unmodified _PRVRARRPRLH_ 0 0 0 ENST00000507479.5_1_4:186317245-186317479:+|nuORF ENST00000507479.5_1_4:186317245-186317479:+|nuORF ENST00000507479.5_1_4:186317245-186317479:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.4419555664062 2 707.442352 1412.87015 NaN NaN NaN NaN NaN NaN NaN 81.121 1 81.121 80.621 81.621 0 0 0 0 0.9435 1 45030 45030 0 0 1 47396 14540 31873 32616 55375 55375 0.18023080810462488 PRVYKLGPL 9 Unmodified _PRVYKLGPL_ 0 0 0 REV__ENSG00000224586|ENST00000412168|GPX5 REV__ENSG00000224586|ENST00000412168|GPX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8236694335938 2 521.824027 1041.6335 -0.33915 -0.00017698 0.68386 0.00035685 0.3447 0.00017988 521.8245414405862 36.695 0.27766 36.716 36.559 36.836 0.021545 28 12 3 0 0 0 0.55144 1 19509 19509 4.3292 0.73274 1 4668900 + 47397 24381 31874 32617 55376 55376 0.11434916473558587 PRWCYPHWPR 10 Unmodified _PRWCYPHWPR_ 0 0 0 REV__ENST00000245543.5_1_17:73125136-73125187:+|nuORF REV__ENST00000245543.5_1_17:73125136-73125187:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.8954162597656 3 466.560986 1396.66113 0.81221 0.00037894 -0.42297 -0.00019734 0.38923 0.0001816 466.56084548221577 53.652 0.35307 53.652 53.486 53.839 0 52 16 4 0 0 0 0.6966 1 29711 29711 1.5923 0.37745 1 24845000 + 47398 24858 31875 32618 55377 55377 -0.02133503537879733 PRWERWRWPWC 11 Unmodified _PRWERWRWPWC_ 0 0 0 REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7072448730469 4 415.20439 1656.78845 -0.67576 -0.00028058 0.8332 0.00034595 0.15745 6.5372E-05 415.2048681670575 15.291 0.10632 15.291 15.237 15.344 0 64 24 4 0 0 0 0.7453 1 7339 7339 0 0 1 3375900 + 47399 29133 31876 32619 55378 55378 -0.013667826636719838 PRWERWRWPWC 11 Unmodified _PRWERWRWPWC_ 0 0 0 REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.606201171875 3 553.270095 1656.78845 -0.22533 -0.00012467 1.082 0.00059862 0.85664 0.00047396 553.6049957081414 15.282 0.072499 15.282 15.243 15.316 0 30 14 3 0 0 0 0.7453 1 7343 7343 0 0 1 1092800 + 47400 29133 31876 32619 55379 55379 -0.013667826636719838 PRWERWRWPWC 11 Unmodified _PRWERWRWPWC_ 0 0 0 REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.0366821289062 4 415.20439 1656.78845 -0.67576 -0.00028058 0.8332 0.00034595 0.15745 6.5372E-05 415.2048681670575 15.291 0.10632 15.291 15.237 15.344 0 64 24 4 0 0 0 0.30605 1 7327 7327 0 0 1 3375900 + 47401 29133 31876 32619 55380 55380 -0.013667826636719838 PRWGNPRAL 9 Unmodified _PRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.798583984375 2 533.798875 1065.5832 0.066471 3.5482E-05 -0.90739 -0.00048437 -0.84092 -0.00044888 533.7982926243392 33.484 0.45163 33.513 33.317 33.769 0.028934 47 19 3 0 0 0 0.0041763 2 17667 17564;17667 120.45 72.105 1 12044000 47402 16067;16068 31877 32620 55381;55382 55382 0.05302806868417065 PRWGNPRAL 9 Unmodified _PRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2019653320312 3 356.201675 1065.5832 -0.034817 -1.2402E-05 0.51544 0.0001836 0.48062 0.0001712 356.2019364247406 33.498 0.45466 33.527 33.361 33.816 0.028934 31 19 2 0 0 0 0.047196 1 17626 17626 41.956 27.55 1 4911500 47403 16067;16068 31877 32620 55383 55383 0.05302806868417065 PRWGNPRAL 9 Unmodified _PRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8003540039062 2 533.798875 1065.5832 1.1643 0.00062149 -1.075 -0.00057382 0.089313 4.7675E-05 533.7983162495965 37.184 0.42244 32.9 32.65 33.072 -4.2835 63 25 3 0 0 0 2.6046E-06 1 21716 21716 156.16 91.92 1 47333000 47404 16067;16068 31877 32620 55384 55384 0.05302806868417065 PRWGNPRAL 9 Unmodified _PRWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2017822265625 3 356.201675 1065.5832 1.9058 0.00067885 -0.37504 -0.00013359 1.5308 0.00054526 356.2015109533447 37.219 0.40055 32.935 32.719 33.12 -4.2835 61 24 3 0 0 0 0.011968 2 21898 21773;21898 76.825 46.984 1 20379000 47405 16067;16068 31877 32620 55385;55386 55386 0.05302806868417065 PRWHMHDFF 9 Unmodified _PRWHMHDFF_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000136546|ENST00000643258|SCN7A;ENSG00000185313|ENST00000449082|SCN10A ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000136546|ENST00000643258|SCN7A;ENSG00000185313|ENST00000449082|SCN10A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.8639526367188 3 424.862554 1271.56583 -0.098177 -4.1712E-05 1.1211 0.00047633 1.023 0.00043462 424.86329646209236 48.215 0.30267 48.215 48.092 48.394 0 40 14 4 0 0 0 0.58145 1 26429 26429 2.4985 0.41248 1 6987900 47406 9878;4836;363;9361 31878 32621 55387 55387 -0.05908856728910905 PRWHMHDFFH 10 Unmodified _PRWHMHDFFH_ 0 0 0 ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;ENSG00000136546|ENST00000643258|SCN7A;ENSG00000185313|ENST00000449082|SCN10A ENSG00000007314|ENST00000435607|SCN4A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;ENSG00000136546|ENST00000643258|SCN7A;ENSG00000185313|ENST00000449082|SCN10A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8478698730469 4 353.163462 1408.62474 1.8859 0.00066604 -3.789 -0.0013381 -1.9031 -0.00067209 353.4127754909324 21.643 0.15076 18.908 18.844 18.995 -2.7348 12 7 2 0 0 0 0.23922 1 11589 11589 1.9064 0 1 1012700 47407 9878;4836;363;9361 31879 32622 55388 55388 -0.06322380434585284 PRWKRHISEQL 11 Unmodified _PRWKRHISEQL_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000485623.5_1_2:234160473-234172712:+|nuORF;ENST00000474148.5_1_2:234160473-234181699:+|nuORF;nc|ENSG00000085978|Q676U5-3|ATG16L1;ENST00000479942.5_1_2:234160473-234198706:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MSMS AL20221201_MKP_PDAC_01 4 483.9422302246094 3 483.940632 1448.80007 NaN NaN NaN NaN NaN NaN NaN 19.794 1 17.138 16.638 17.638 -2.6564 0 0 0 0.94011 1 10511 10511 2.4348 1.1051 1 47408 1424 31880 32623 55389 55389 0.09361737631343203 PRWLDDISF 9 Unmodified _PRWLDDISF_ 0 0 0 ENST00000424795.2_1_9:71403867-71403945:-|nuORF ENST00000424795.2_1_9:71403867-71403945:-|nuORF ENST00000424795.2_1_9:71403867-71403945:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5303344726562 3 383.529346 1147.56621 0.47195 0.00018101 1.0474 0.0004017 1.5193 0.0005827 383.5297997946285 25.065 0.44249 22.182 21.945 22.387 -2.8831 108 41 3 0 0 0 0.54444 1 13734 13734 2.7352 0.82882 1 38920000 47409 13153 31881 32624 55390 55390 -0.001671585280519139 PRWRRRWFVLK 11 Unmodified _PRWRRRWFVLK_ 0 0 0 ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 MSMS AL20221201_MKP_PDAC_01 4 800.4791870117188 2 800.478403 1598.94225 NaN NaN NaN NaN NaN NaN NaN 104.54 1 98.36 97.86 98.86 -6.1757 0 0 0 0.9435 1 70002 70002 0 0 1 47410 5438 31882 32625 55391 55391 0.16673995164137523 PRYCLFGDTV 10 Unmodified _PRYCLFGDTV_ 0 0 0 ENSG00000132518|ENST00000254854|GUCY2D;ENST00000464810.5_1_9:35808735-35809439:+|nuORF;ENST00000368677.2_1_1:153661447-153665772:+|nuORF;nc|ENSG00000293412|O75343|GUCY1B2;ENSG00000159899|ENST00000342694|NPR2;ENSG00000169418|ENST00000368680|NPR1;ENSG00000070019|ENST00000261170|GUCY2C;ENSG00000101890|ENST00000218006|GUCY2F ENSG00000132518|ENST00000254854|GUCY2D ENSG00000132518|ENST00000254854|GUCY2D MSMS AL20221201_MKP_PDAC_01 4 390.8612976074219 3 390.858586 1169.55393 NaN NaN NaN NaN NaN NaN NaN 20.945 1 18.252 17.752 18.752 -2.693 0 0 0 0.97302 1 11181 11181 1.7423 0 1 47411 4417 31883 32626 55392 55392 -0.024065182627509785 PRYEHVTTQ 9 Unmodified _PRYEHVTTQ_ 0 0 0 ENST00000438618.2_1_6:135963459-135963552:+|nuORF ENST00000438618.2_1_6:135963459-135963552:+|nuORF ENST00000438618.2_1_6:135963459-135963552:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7866821289062 2 565.783087 1129.55162 1.3893 0.00078605 0.56789 0.0003213 1.9572 0.0011073 565.7831938314996 37.524 0.53302 33.241 32.873 33.406 -4.2835 81 31 3 0 0 0 0.45045 1 21832 21832 10.074 0.72649 1 36685000 47412 13363 31884 32627 55393 55393 -0.007972306761985237 PRYPSECPADQ 11 Unmodified _PRYPSECPADQ_ 0 0 0 ENST00000485682.6_2_11:2422320-2422626:+|nuORF ENST00000485682.6_2_11:2422320-2422626:+|nuORF ENST00000485682.6_2_11:2422320-2422626:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.5191345214844 3 421.520522 1261.53974 NaN NaN NaN NaN NaN NaN NaN 56.161 1 55.675 55.175 56.175 -0.48554 0 0 0 0.94037 1 30485 30485 2.2527 0.34635 1 47413 14170 31885 32628 55394 55394 -0.08057215481699131 PSAARVHNL 9 Unmodified _PSAARVHNL_ 0 0 0 REV__ENSG00000020426|ENST00000261245|MNAT1 REV__ENSG00000020426|ENST00000261245|MNAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7694702148438 2 482.769783 963.525013 0.27301 0.0001318 -0.15278 -7.3756E-05 0.12023 5.8044E-05 482.769623290693 81.435 0.25544 81.435 81.304 81.559 0 17 10 2 0 0 0 0.34999 1 45167 45167 14.838 2.3067 1 602010 + 47414 17107 31886 32629 55395 55395 0.041791252231291764 PSAARVHNL 9 Unmodified _PSAARVHNL_ 0 0 0 REV__ENSG00000020426|ENST00000261245|MNAT1 REV__ENSG00000020426|ENST00000261245|MNAT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 482.769783 963.525013 0.27301 0.0001318 -0.15278 -7.3756E-05 0.12023 5.8044E-05 482.769623290693 81.435 0.25544 81.435 81.304 81.559 0 0 0 NaN 14.838 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 602010 + 47415 17107 31886 32629 0.041791252231291764 PSADRHKSKL 10 Unmodified _PSADRHKSKL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2162780761719 3 380.215761 1137.62546 0.62808 0.00023881 0.96152 0.00036559 1.5896 0.00060439 380.5503435866531 14.712 0.10425 12.209 12.163 12.267 -2.5029 23 16 2 0 0 0 0.40046 1 7489 7489 21.59 7.1848 1 1603500 47416 4284 31887 32630 55396 55396 0.06214737486129707 PSADTTPF 8 Unmodified _PSADTTPF_ 0 0 0 ENST00000480510.5_1_22:37678610-37692439:+|nuORF ENST00000480510.5_1_22:37678610-37692439:+|nuORF ENST00000480510.5_1_22:37678610-37692439:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.3834838867188 1 835.383225 834.375948 -0.045104 -3.7679E-05 -0.17761 -0.00014838 -0.22272 -0.00018606 835.3833282304756 72.207 0.33274 72.207 72.054 72.387 0 22 14 2 0 0 0 0.5284 1 40178 40178 32.117 1.8922 1 747420 47417 14059 31888 32631 55397 55397 -0.04786445190291033 PSAELHPFCP 10 Unmodified _PSAELHPFCP_ 0 0 0 ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF ENST00000373374.7_1_1:34673819-34684388:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.5079956054688 3 366.507665 1096.50117 0.79868 0.00029272 1.9196 0.00070356 2.7183 0.00099628 366.50860916504075 12.07 0.12336 9.5882 9.535 9.6584 -2.482 20 16 2 0 0 0 0.23986 1 6063 6063 0.69767 0.07084 1 1354300 47418 12412 31889 32632 55398 55398 -0.04322476325569369 PSAHSHYLYGH 11 Unmodified _PSAHSHYLYGH_ 0 0 0 ENST00000486360.1_1_1:203045416-203045515:+|nuORF ENST00000486360.1_1_1:203045416-203045515:+|nuORF ENST00000486360.1_1_1:203045416-203045515:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.7957763671875 2 634.793986 1267.57342 NaN NaN NaN NaN NaN NaN NaN 53.349 1 47.545 47.045 48.045 -5.8042 0 0 0 0.67092 1 33707 33707 18.146 1.0335 1 47419 14184 31890 32633 55399 55399 -0.049664259276369194 PSALALSLLL 10 Unmodified _PSALALSLLL_ 0 0 0 ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3204345703125 2 499.318243 996.621933 NaN NaN NaN NaN NaN NaN NaN 100.24 1 100.2 99.705 100.7 -0.036301 0 0 0 0.92825 1 55679 55679 6.7232 0 1 47420 6471 31891 32634 55400 55400 0.12348674659574499 PSALALSLLL 10 Unmodified _PSALALSLLL_ 0 0 0 ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.6285400390625 1 997.629209 996.621933 0.92982 0.00092762 -2.9356 -0.0029287 -2.0058 -0.0020011 997.6287551654035 101.24 0.08844 95.068 95.018 95.107 -6.1757 17 5 4 0 0 0 0.01132 1 67904 67904 85.272 0 1 43579000 47421 6471 31891 32634 55401 55401 0.12348674659574499 PSALALSLLL 10 Unmodified _PSALALSLLL_ 0 0 0 ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN;ENST00000565325.5_1_15:73854253-73925580:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3183288574219 2 499.318243 996.621933 1.1869 0.00059264 -1.6238 -0.00081079 -0.43688 -0.00021814 499.3173739473233 101.25 0.20155 95.072 94.923 95.125 -6.1757 31 12 4 0 0 0 0.017277 1 67905 67905 78.149 13.913 1 156040000 47422 6471 31891 32634 55402 55402 0.12348674659574499 PSALPYLLTL 10 Unmodified _PSALPYLLTL_ 0 0 0 REV__nc|ENSG00000196547|P49641-1|MAN2A2 REV__nc|ENSG00000196547|P49641-1|MAN2A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3242797851562 2 544.323525 1086.6325 0.7607 0.00041407 0.36613 0.00019929 1.1268 0.00061336 544.8254732783886 48.279 0.42565 43.045 42.821 43.247 -5.2339 54 25 3 0 0 0 0.52888 1 30112 30112 14.838 1.3304 1 21943000 + 47423 23843 31892 32635 55403 55403 0.09264657313997304 PSAPALPPPH 10 Unmodified _PSAPALPPPH_ 0 0 0 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2669372558594 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 24.866 1 24.866 24.366 25.366 0 0 0 0 0.71851 1 12722 12722 15.847 0 1 47424 5634 31893 32636 55404 55404 0.031654911343593994 PSAPALPPPH 10 Unmodified _PSAPALPPPH_ 0 0 0 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 ENSG00000144711|ENST00000613206|IQSEC1 MSMS AL20221201_MKP_PDAC_01 4 492.2675476074219 2 492.269084 982.523616 NaN NaN NaN NaN NaN NaN NaN 22.418 1 19.639 19.139 20.139 -2.7784 0 0 0 0.71851 1 12057 12057 15.847 1.9411 1 47425 5634 31893 32636 55405 55405 0.031654911343593994 PSAPKDLIDTY 11 Unmodified _PSAPKDLIDTY_ 0 0 0 ENSG00000197408|ENST00000324071|CYP2B6 ENSG00000197408|ENST00000324071|CYP2B6 ENSG00000197408|ENST00000324071|CYP2B6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5507507324219 3 407.211683 1218.61322 1.202 0.00048948 1.4235 0.00057967 2.6255 0.0010691 407.21213140633324 30.493 0.45716 26.996 26.736 27.193 -3.497 59 22 3 0 0 0 0.58219 1 17105 17105 6.6235 0 1 115100000 47426 9950 31894 32637 55406 55406 0.012656562324309562 PSAPPPSF 8 Unmodified _PSAPPPSF_ 0 0 0 ENST00000571495.1_1_17:2585080-2585146:+|nuORF ENST00000571495.1_1_17:2585080-2585146:+|nuORF ENST00000571495.1_1_17:2585080-2585146:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2326354980469 2 400.202879 798.391205 0.11675 4.6725E-05 1.1637 0.00046572 1.2805 0.00051245 400.20322668816226 48.679 0.35429 48.636 48.455 48.81 -0.04369 25 17 2 0 0 0 8.7369 1 26306 26306 56.541 0 1 3344900 47427 15485 31895 32638 55407 55407 -0.016055336024351163 PSAQEHLASL 10 Unmodified _PSAQEHLASL_ 0 0 0 ENSG00000089847|ENST00000318934|ANKRD24;nc|ENSG00000089847|Q8TF21-2|ANKRD24 ENSG00000089847|ENST00000318934|ANKRD24 ENSG00000089847|ENST00000318934|ANKRD24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7728271484375 2 526.772188 1051.52982 0.17145 9.0317E-05 -0.052968 -2.7902E-05 0.11849 6.2415E-05 526.7722641125806 58.299 0.38708 57.808 57.618 58.005 -0.49079 32 18 2 0 0 0 0.11824 2 31646 31646;31749 43.772 6.2814 1 16660000 47428 1539 31896 32639 55408;55409 55408 0.006119645752278302 PSARKLIYY 9 Unmodified _PSARKLIYY_ 0 0 0 nc|ENSG00000139926|Q96NE9-2|FRMD6;ENSG00000139926|ENST00000344768|FRMD6 nc|ENSG00000139926|Q96NE9-2|FRMD6 nc|ENSG00000139926|Q96NE9-2|FRMD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8827209472656 3 370.88172 1109.62333 1.7984 0.00066698 1.0665 0.00039556 2.8649 0.0010625 370.88220893344834 35.78 0.37768 31.587 31.409 31.787 -4.1928 63 23 4 0 0 0 0.36964 1 20796 20796 13.615 4.0709 1 34101000 47429 5198 31897 32640 55410 55410 0.0729030874831551 PSASAWPEE 9 Unmodified _PSASAWPEE_ 0 0 0 nc|ENSG00000115828|Q16769-2|QPCT;ENSG00000115828|ENST00000338415|QPCT nc|ENSG00000115828|Q16769-2|QPCT nc|ENSG00000115828|Q16769-2|QPCT MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2166442871094 2 487.216714 972.418876 0.25031 0.00012196 1.5914 0.00077534 1.8417 0.0008973 487.2173622245102 24.181 0.34228 21.354 21.159 21.501 -2.8273 25 18 2 0 0 0 0.41742 1 13204 13204 11.64 0.81637 1 2474500 47430 3166 31898 32641 55411 55411 -0.06843675132859062 PSASIYNYNI 10 Unmodified _PSASIYNYNI_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MSMS AL20221201_MKP_PDAC_01 4 381.1904602050781 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 93.247 1 87.071 86.571 87.571 -6.1757 0 0 0 0.76313 1 61708 61708 8.4443 0 1 47431 9633 31899 32642 55412 55412 -0.019511686275791362 PSASLAALP 9 Unmodified _PSASLAALP_ 0 0 0 REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF REV__ENST00000592217.2_1_19:46271832-46273041:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.47265625 1 826.466895 825.459619 0.49417 0.00040842 -0.36765 -0.00030385 0.12652 0.00010457 826.4664684523661 78.35 1.1249 72.175 71.754 72.879 -6.1757 203 66 4 0 0 0 0.10734 1 51073 51073 32.305 3.8186 1 211680000 + 47432 29173 31900 32643 55413 55413 0.03990710977427625 PSAVPRYPDAR 11 Unmodified _PSAVPRYPDAR_ 0 0 0 REV__ENSG00000156925|ENST00000287538|ZIC3 REV__ENSG00000156925|ENST00000287538|ZIC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2202453613281 3 410.219283 1227.63602 NaN NaN NaN NaN NaN NaN NaN 21.244 1 21.258 20.758 21.758 0.013796 0 0 0 0.88164 1 10868 10868 4.1166 0.27072 1 + 47433 21353 31901 32644 55414 55414 0.03130720140552512 PSCFHNYY 8 Unmodified _PSCFHNYY_ 0 0 0 REV__ENSG00000100139|ENST00000215957|MICALL1 REV__ENSG00000100139|ENST00000215957|MICALL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1030.744873046875 1 1030.40873 1029.40145 0.30983 0.00031925 0.67426 0.00069476 0.98408 0.001014 1030.409317351077 54.109 0.26143 54.042 53.981 54.243 -0.066936 15 10 2 0 0 0 8.7369 1 29487 29487 2.5775 0 1 3185100 + 47434 18017 31902 32645 55415 55415 -0.11207293939514784 PSCFHNYY 8 Unmodified _PSCFHNYY_ 0 0 0 REV__ENSG00000100139|ENST00000215957|MICALL1 REV__ENSG00000100139|ENST00000215957|MICALL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1030.40873 1029.40145 0.79674 0.00082096 -2.9448 -0.0030343 -2.1481 -0.0022134 1030.4086077871705 60.403 0.1638 54.288 54.216 54.379 -6.1147 0.12305 -0.0028809 NaN 2.5775 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 18385000 + 47435 18017 31902 32645 -0.11207293939514784 PSCNRSSPDL 10 Unmodified _PSCNRSSPDL_ 0 0 0 REV__PPP6R3-LRP5|1|fusion REV__PPP6R3-LRP5|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2478637695312 2 538.24548 1074.47641 0.48562 0.00026138 1.6053 0.00086402 2.0909 0.0011254 538.2461937361172 44.668 0.40277 39.816 39.557 39.959 -4.852 77 32 3 0 0 0 0.48505 1 27219 27219 17.113 2.2746 1 46877000 + 47436 30078 31903 32646 55416 55416 -0.05785156198930963 PSCSAAVAM 9 Unmodified _PSCSAAVAM_ 0 0 0 ENST00000427525.2_1_15:85175210-85177593:+|nuORF ENST00000427525.2_1_15:85175210-85177593:+|nuORF ENST00000427525.2_1_15:85175210-85177593:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 836.3651123046875 1 836.364086 835.35681 1.4488 0.0012117 -0.84521 -0.00070691 0.60355 0.00050479 836.3641067276394 47.803 0.4984 42.57 42.294 42.793 -5.2339 80 29 4 0 0 0 0.06187 2 29677 29677;29809 42.095 0 1 52517000 47437 13194 31904 32647 55417;55418 55417 -0.0674544107720294 PSDCLYNAPW 10 Unmodified _PSDCLYNAPW_ 0 0 0 REV__ENSG00000137462|ENST00000642700|TLR2 REV__ENSG00000137462|ENST00000642700|TLR2 MSMS AL20221201_MKP_PDAC_01 4 389.1726379394531 3 389.170941 1164.491 NaN NaN NaN NaN NaN NaN NaN 97.732 1 91.557 91.057 92.057 -6.1757 0 0 0 0.91523 1 64769 64769 3.8763 0.28927 1 + 47438 20240 31905 32648 55419 55419 -0.08467084050789708 PSDKLSPTRV 10 Unmodified _PSDKLSPTRV_ 0 0 0 REV__nc|ENSG00000163362|Q3KP66|INAVA REV__nc|ENSG00000163362|Q3KP66|INAVA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.2656860351562 2 550.308938 1098.60332 0.53418 0.00029396 -2.3097 -0.001271 -1.7755 -0.00097707 550.3074690928999 44.281 0.22634 39.429 39.371 39.597 -4.852 28 17 2 0 0 0 0.23946 1 27075 27075 3.5965 3.5965 1 13469000 + 47439 21754 31906 32649 55420 55420 0.05796513017708094 PSDLRLKDTES 11 Unmodified _PSDLRLKDTES_ 0 0 0 REV__ENSG00000268041|ENST00000597630|ERFL REV__ENSG00000268041|ENST00000597630|ERFL MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.824951171875 2 630.825149 1259.63574 0.84313 0.00053187 -1.4052 -0.00088645 -0.5621 -0.00035458 630.824133541589 102.34 0.10374 96.164 96.114 96.218 -6.1757 22 7 4 0 0 0 0.46578 1 68681 68681 18.146 0 1 23182000 + 47440 24615 31907 32650 55421 55421 0.016312556300363212 PSDLVEIK 8 Unmodified _PSDLVEIK_ 0 0 0 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 REV__ENSG00000151131|ENST00000552951|NOPCHAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 900.5037231445312 1 900.503674 899.496398 0.42843 0.0003858 0.055208 4.9715E-05 0.48363 0.00043551 900.5036043804184 53.85 0.26296 53.85 53.705 53.968 0 26 11 3 0 0 0 0.80311 1 29936 29936 4.756 0 1 5807400 + 47441 21050 31908 32651 55422 55422 0.042629628033296285 PSDLVLSYY 9 Unmodified _PSDLVLSYY_ 0 0 0 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7662963867188 2 528.76604 1055.51753 0.5057 0.0002674 -0.096725 -5.1145E-05 0.40898 0.00021625 528.7659975254954 68.942 0.56998 68.942 68.656 69.226 0 59 24 4 0 0 0 0.06187 1 38410 38410 42.095 23.96 1 8847800 + 47442 24536 31909 32652 55423 55423 -0.008010718878267653 PSDLVLSYY 9 Unmodified _PSDLVLSYY_ 0 0 0 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7662963867188 2 528.76604 1055.51753 -0.10362 -5.4789E-05 0.59359 0.00031387 0.48998 0.00025908 528.7664875539258 69.439 0.74814 68.96 68.653 69.401 -0.47903 120 32 5 0 0 0 0.06187 2 37950 37950;38051 42.095 23.96 1 42937000 + 47443 24536 31909 32652 55424;55425 55424 -0.008010718878267653 PSDLVLSYY 9 Unmodified _PSDLVLSYY_ 0 0 0 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 REV__nc|ENSG00000255408|Q9Y5H8-2|PCDHA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 528.76604 1055.51753 0.58403 0.00030881 -0.09258 -4.8953E-05 0.49145 0.00025986 528.7656791800454 68.936 0.3532 68.961 68.77 69.123 0.025154 0.0065634 -0.00027337 NaN 42.095 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2160000 + 47444 24536 31909 32652 -0.008010718878267653 PSDMAVALL 9 Unmodified _PSDMAVALL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 916.4796142578125 1 916.480831 915.473554 0.23114 0.00021183 -0.8489 -0.000778 -0.61776 -0.00056617 916.4801833930296 67.746 0.26833 67.746 67.583 67.851 0 22 12 2 0 0 0 0.070838 1 37742 37742 39.957 0 1 1233400 47445 16412 31910 32653 55426 55426 0.0124362041420909 PSDMAVALL 9 Unmodified _PSDMAVALL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 916.478759765625 1 916.480831 915.473554 0.2504 0.00022949 0.22533 0.00020651 0.47573 0.000436 916.4806996275483 68.247 0.19393 67.767 67.683 67.877 -0.48071 14 8 2 0 0 0 0.10734 1 37293 37293 32.305 0 1 805390 47446 16412 31910 32653 55427 55427 0.0124362041420909 PSDMAVALL 9 Unmodified _PSDMAVALL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.4891357421875 1 916.480831 915.473554 0.57954 0.00053113 -0.057627 -5.2814E-05 0.52191 0.00047832 916.4810511188517 75.101 0.57138 68.926 68.606 69.177 -6.1757 65 30 3 0 0 0 0.25681 1 49067 49067 19.257 3.4098 1 25818000 47447 16412 31910 32653 55428 55428 0.0124362041420909 PSDMAVALL 9 Unmodified _PSDMAVALL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7441711425781 2 458.744053 915.473554 0.9342 0.00042856 -0.14217 -6.5221E-05 0.79202 0.00036334 458.7440402370249 75.099 0.60919 68.923 68.606 69.215 -6.1757 70 32 3 0 0 0 0.16226 1 49174 49174 26.884 9.9414 1 25011000 47448 16412 31910 32653 55429 55429 0.0124362041420909 PSDRKVRPRPT 11 Unmodified _PSDRKVRPRPT_ 0 0 0 ENSG00000158545|ENST00000301011|ZC3H18 ENSG00000158545|ENST00000301011|ZC3H18 ENSG00000158545|ENST00000301011|ZC3H18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1308.297119140625 1 1308.74949 1307.74222 1.4174 0.001855 3.9162 0.0051253 5.3336 0.0069804 1308.7571986955786 81.167 0.19588 81.227 81.064 81.26 0.059929 9 7 2 0 0 0 0.30572 1 44827 44827 1.3295 0.13619 1 2422700 47449 6594 31911 32654 55430 55430 0.10065475705891913 PSDVESVM 8 Unmodified _PSDVESVM_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.1951599121094 2 432.194393 862.374234 NaN NaN NaN NaN NaN NaN NaN 53.179 1 53.179 52.679 53.679 0 0 0 0 0.97348 1 29459 29459 5.7604 2.8712 1 47450 1149 31912 32655 55431 55431 -0.06245822270534518 PSDVKLKL 8 Unmodified _PSDVKLKL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2820434570312 2 450.28166 898.548768 0.58839 0.00026494 -0.12462 -5.6113E-05 0.46378 0.00020883 450.28155891955987 47.311 0.20444 46.958 46.86 47.064 -0.3526 14 9 2 0 0 0 0.10059 1 25371 25371 99.755 35.519 1 2387000 47451 6383 31913 32656 55432 55432 0.09543545936935516 PSDVKLKL 8 Unmodified _PSDVKLKL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2823486328125 2 450.28166 898.548768 0.76802 0.00034583 1.0244 0.00046127 1.7924 0.00080709 450.2819742002935 52.212 0.19772 46.478 46.437 46.635 -5.7345 14 11 2 0 0 0 0.052536 1 32980 32980 147.06 54.237 1 20476000 47452 6383 31913 32656 55433 55433 0.09543545936935516 PSECTPPSSY 10 Unmodified _PSECTPPSSY_ 0 0 0 REV__ENST00000484333.1_1_10:46113605-46116262:-|nuORF REV__ENST00000484333.1_1_10:46113605-46116262:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.22021484375 2 534.221139 1066.42773 NaN NaN NaN NaN NaN NaN NaN 23.821 1 20.994 20.494 21.494 -2.8273 0 0 0 0.51756 1 12917 12917 25.399 4.9457 1 + 47453 27758 31914 32657 55434 55434 -0.10283069558681746 PSEEHLSPQ 9 Unmodified _PSEEHLSPQ_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2415161132812 2 512.240721 1022.46689 NaN NaN NaN NaN NaN NaN NaN 15.736 1 15.736 15.236 16.236 0 0 0 0 0.71962 1 7608 7608 8.7454 1.4562 1 47454 3021 31915 32658 55435 55435 -0.04344601212812904 PSEEPIKTI 9 Unmodified _PSEEPIKTI_ 0 0 0 ENSG00000185662|ENST00000523047|SMIM23 ENSG00000185662|ENST00000523047|SMIM23 ENSG00000185662|ENST00000523047|SMIM23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2798767089844 2 507.279315 1012.54408 NaN NaN NaN NaN NaN NaN NaN 40.302 1 40.302 39.802 40.802 0 0 0 0 0.7453 1 21653 21653 7.9102 0.62092 1 47455 9396 31916 32659 55436 55436 0.03830617003529824 PSEEQKKQ 8 Unmodified _PSEEQKKQ_ 0 0 0 ENSG00000134138|ENST00000561208|MEIS2;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;nc|ENSG00000134138|O14770-6|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000143995|O00470-2|MEIS1;nc|ENSG00000105419|Q99687-2|MEIS3;ENSG00000143995|ENST00000272369|MEIS1;ENST00000409517.5_1_2:66688993-66796237:+|nuORF;ENST00000606455.5_1_2:66670102-66794607:+|nuORF;ENSG00000105419|ENST00000558555|MEIS3;nc|ENSG00000188013|A8K0S8|MEIS3P2;nc|ENSG00000105419|Q99687-3|MEIS3;nc|ENSG00000179277|A6NDR6|MEIS3P1;ENST00000561204.5_1_19:47909736-47921444:-|nuORF ENSG00000134138|ENST00000561208|MEIS2 ENSG00000134138|ENST00000561208|MEIS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7256469726562 2 487.251089 972.487624 -0.14764 -7.1939E-05 -0.51423 -0.00025056 -0.66188 -0.0003225 487.2514959257067 23.291 0.29958 23.291 23.107 23.407 0 24 14 2 0 0 0 8.7369 1 11893 11893 25.399 1.3787 1 1269200 47456 4561 31917 32660 55437 55437 0.0002798916685833319 PSEEQTQQN 9 Unmodified _PSEEQTQQN_ 0 0 0 REV__ENSG00000121864|ENST00000496856|ZNF639 REV__ENSG00000121864|ENST00000496856|ZNF639 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2619018554688 2 530.730717 1059.44688 0.98918 0.00052499 -0.12754 -6.7691E-05 0.86164 0.0004573 530.7302512762378 54.677 0.23742 54.677 54.528 54.765 0 13 9 2 0 0 0 0.20139 1 30362 30362 10.824 0 1 2065600 + 47457 19316 31918 32661 55438 55438 -0.08046396943404943 PSEGVLLSL 9 Unmodified _PSEGVLLSL_ 0 0 0 REV__ENSG00000141456|ENST00000572293|PELP1 REV__ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.518798828125 1 914.519325 913.512048 0.20291 0.00018557 1.1368 0.0010396 1.3397 0.0012252 914.5200009388539 68.227 0.36759 68.227 68.024 68.391 0 26 17 2 0 0 0 0.16226 1 38066 38066 26.884 0 1 507020 + 47458 20536 31919 32662 55439 55439 0.05183249320384675 PSEHKRAFM 9 Unmodified _PSEHKRAFM_ 0 0 0 REV__nc|ENSG00000145016|Q92622-3|RUBCN REV__nc|ENSG00000145016|Q92622-3|RUBCN MSMS AL20221201_MKP_PDAC_01 4 368.1866455078125 3 368.186926 1101.53895 NaN NaN NaN NaN NaN NaN NaN 9.8968 1 7.4149 6.9149 7.9149 -2.482 0 0 0 0.85737 1 4991 4991 0.26902 0 1 + 47459 20752 31920 32663 55440 55440 -0.0077596534008534945 PSEIEVKY 8 Unmodified _PSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7535705566406 2 482.752933 963.491313 -0.066981 -3.2335E-05 0.2808 0.00013556 0.21382 0.00010322 482.7528769346315 48.878 0.17831 48.878 48.808 48.986 0 12 8 2 0 0 0 0.087939 1 26864 26864 103.75 43.359 1 3115900 47460 9832 31921 32664 55441 55441 0.00810658940713438 PSEIEVKY 8 Unmodified _PSEIEVKY_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7536315917969 2 482.752933 963.491313 1.201 0.00057977 0.69353 0.0003348 1.8945 0.00091457 482.7532011784552 55.086 0.28339 49.165 49.016 49.3 -5.9211 22 17 2 0 0 0 0.087939 1 34985 34985 103.75 50.173 1 23412000 47461 9832 31921 32664 55442 55442 0.00810658940713438 PSELFTIT 8 Unmodified _PSELFTIT_ 0 0 0 REV__nc|ENSG00000148053|Q16620-6|NTRK2 REV__nc|ENSG00000148053|Q16620-6|NTRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 907.5078125 1 907.477125 906.469849 0.91575 0.00083103 -0.077912 -7.0704E-05 0.83784 0.00076032 907.4775173487046 63.009 0.27333 56.834 56.676 56.949 -6.1757 17 13 2 0 0 0 0.46494 1 40649 40649 38.151 0 1 12293000 + 47462 20923 31922 32665 55443 55443 0.012872739119870857 PSELLVDTL 9 Unmodified _PSELLVDTL_ 0 0 0 REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7748413085938 2 493.773865 985.533177 0.15158 7.4844E-05 0.55663 0.00027485 0.7082 0.00034969 493.77409744901996 80.659 0.50258 80.659 80.408 80.911 0 73 23 4 0 0 0 0.5029 1 44904 44904 7.2892 0 1 27796000 + 47463 20854 31923 32666 55444 55444 0.039832146292383186 PSELPAKLL 9 Unmodified _PSELPAKLL_ 0 0 0 ENSG00000172680|ENST00000311923|MOS ENSG00000172680|ENST00000311923|MOS ENSG00000172680|ENST00000311923|MOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2982788085938 2 484.294768 966.574983 0.6134 0.00029707 1.003 0.00048573 1.6164 0.0007828 484.29540597959607 85.269 0.61833 84.767 84.365 84.983 -0.5015 67 42 3 0 0 0 0.2001 1 46570 46570 23.148 9.6405 1 5561500 47464 8241 31924 32667 55445 55445 0.09035815108438783 PSELPFFFFCH 11 Unmodified _PSELPFFFFCH_ 0 0 0 REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.8136596679688 2 685.815541 1369.61653 0.043332 2.9718E-05 0.87851 0.0006025 0.92184 0.00063221 685.8143359913139 39.491 0.52672 39.491 39.154 39.681 0 61 24 5 0 0 0 0.56638 1 21171 21171 13.042 1.5478 1 8422300 + 47465 29255 31925 32668 55446 55446 -0.05349372194541502 PSELPFFFFCH 11 Unmodified _PSELPFFFFCH_ 0 0 0 REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF REV__ENST00000601114.1_1_19:51379578-51380013:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 685.815541 1369.61653 0.075836 5.2009E-05 -0.86803 -0.00059531 -0.79219 -0.0005433 686.3157661531079 39.898 0.17813 39.601 39.512 39.69 -0.29716 0.055219 -0.00076478 NaN 13.042 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1108500 + 47466 29255 31925 32668 -0.05349372194541502 PSEMETDEP 9 Unmodified _PSEMETDEP_ 0 0 0 nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2822265625 2 517.70278 1033.39101 0.63228 0.00032733 1.2985 0.00067224 1.9308 0.00099957 517.7039428907876 38.918 0.37039 38.918 38.725 39.096 0 65 16 6 0 0 0 0.19613 1 20756 20756 7.9102 5.3327 1 16262000 47467 4729 31926 32669 55447 55447 -0.12435366175236595 PSEQPLPP 8 Unmodified _PSEQPLPP_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8854675292969 2 432.726718 863.438883 0.51594 0.00022326 0.69909 0.00030251 1.215 0.00052577 432.726885518977 42.385 0.30511 42.385 42.238 42.544 0 19 14 2 0 0 0 8.7369 1 22974 22974 2.5775 0 1 1249700 + 47468 23845 31927 32670 55448 55448 0.0017012059777243849 PSESPGVL 8 Unmodified _PSESPGVL_ 0 0 0 ENSG00000117475|ENST00000367808|BLZF1;nc|ENSG00000117475|Q9H2G9-2|BLZF1 ENSG00000117475|ENST00000367808|BLZF1 ENSG00000117475|ENST00000367808|BLZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2064819335938 2 393.205618 784.396684 0.62311 0.00024501 -0.10033 -3.9449E-05 0.52279 0.00020556 393.2056531990536 51.189 0.34605 51.189 51.085 51.431 0 20 15 2 0 0 0 0.67481 1 28311 28311 19.439 0 1 2320400 47469 3307 31928 32671 55449 55449 -0.004138548105970585 PSEVIAVLEE 10 Unmodified _PSEVIAVLEE_ 0 0 0 REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF REV__ENST00000473136.4_2_3:88108451-88184391:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.826171875 2 543.289879 1084.56521 0.53995 0.00029335 -4.2766 -0.0023234 -3.7366 -0.0020301 543.2868610143294 50.835 0.31229 50.781 50.589 50.901 -0.053871 49 15 4 0 0 0 0.23325 1 27394 27394 10.074 2.1638 1 9636800 + 47470 22842 31929 32672 55450 55450 0.026305823123948358 PSEVIYQPV 9 Unmodified _PSEVIYQPV_ 0 0 0 ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL;nc|ENSG00000152430|Q8N9W6-5|BOLL ENSG00000152430|ENST00000392296|BOLL ENSG00000152430|ENST00000392296|BOLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2744140625 2 516.274032 1030.53351 0.057537 2.9705E-05 2.4354 0.0012574 2.493 0.0012871 516.2755447236287 70.306 0.24098 69.827 69.673 69.914 -0.47903 17 10 2 0 0 0 0.23158 1 38433 38433 20.454 3.5113 1 1300500 47471 6184 31930 32673 55451 55451 0.01946634349087617 PSEYDTPLYF 10 Unmodified _PSEYDTPLYF_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2792358398438 2 616.279512 1230.54447 0.5313 0.00032743 -0.16213 -9.9916E-05 0.36917 0.00022751 616.2787023649485 94.785 0.28487 94.364 94.162 94.447 -0.42044 19 13 3 0 0 0 0.68719 1 51749 51749 4.3292 0 1 624970 47472 9162 31931 32674 55452 55452 -0.061580080672683835 PSFATTGASSA 11 Unmodified _PSFATTGASSA_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX nc|ENSG00000008441|Q14938-2|NFIX nc|ENSG00000008441|Q14938-2|NFIX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7363586425781 2 498.735271 995.45599 NaN NaN NaN NaN NaN NaN NaN 20.971 1 20.971 20.471 21.471 0 0 0 0 0.86932 1 10580 10580 8.7454 0.83525 1 47473 392 31932 32675 55453 55453 -0.041920035870930406 PSFDDYEL 8 Unmodified _PSFDDYEL_ 0 0 0 ENSG00000185127|ENST00000332290|C6orf120 ENSG00000185127|ENST00000332290|C6orf120 ENSG00000185127|ENST00000332290|C6orf120 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.7438049316406 2 493.211098 984.407643 0.57856 0.00028535 1.2879 0.00063521 1.8665 0.00092056 493.2118079767808 45.529 0.53085 40.574 40.363 40.894 -4.9549 166 35 7 0 0 0 8.7369 1 28180 28180 5.2307 0 1 267220000 47474 9336 31933 32676 55454 55454 -0.08518497226987165 PSFELSDP 8 Unmodified _PSFELSDP_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.409912109375 1 891.40944 890.402163 0.12021 0.00010715 -0.33885 -0.00030205 -0.21864 -0.00019489 891.4096670832703 56.805 0.28429 56.805 56.662 56.947 0 16 12 2 0 0 0 0.31612 1 31606 31606 53.576 21.459 1 979600 + 47475 21053 31934 32677 55455 55455 -0.047421760188058215 PSFEVLYSF 9 Unmodified _PSFEVLYSF_ 0 0 0 REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7697143554688 2 544.768583 1087.52261 0.63364 0.00034519 -1.4658 -0.0007985 -0.83212 -0.00045331 544.7684915428662 80.705 0.63261 80.213 79.906 80.539 -0.49247 64 26 4 0 0 0 0.16226 2 44197 44197;44295 26.884 8.558 1 2048700 + 47476 24646 31935 32678 55456;55457 55456 -0.017647680251684505 PSFEVLYSF 9 Unmodified _PSFEVLYSF_ 0 0 0 REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B REV__nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.787109375 2 544.768583 1087.52261 0.63364 0.00034519 -1.4658 -0.0007985 -0.83212 -0.00045331 544.7684915428662 80.705 0.63261 80.213 79.906 80.539 -0.49247 64 26 4 0 0 0 0.18521 1 44039 44039 16.942 3.4344 1 2048700 + 47477 24646 31935 32678 55458 55458 -0.017647680251684505 PSFFTRESFK 10 Unmodified _PSFFTRESFK_ 0 0 0 REV__ENSG00000187105|ENST00000553558|HEATR4 REV__ENSG00000187105|ENST00000553558|HEATR4 MSMS AL20221201_MKP_PDAC_01 4 623.3182373046875 2 623.316763 1244.61897 NaN NaN NaN NaN NaN NaN NaN 98.697 1 92.521 92.021 93.021 -6.1757 0 0 0 0.49971 1 65508 65508 26.268 8.1218 1 + 47478 23620 31936 32679 55459 55459 0.006447995347571123 PSFGSRPRLLS 11 Unmodified _PSFGSRPRLLS_ 0 0 0 REV__ENST00000291574.8_1_21:45506817-45507663:+|nuORF REV__ENST00000291574.8_1_21:45506817-45507663:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3451538085938 2 608.843479 1215.67241 0.97828 0.00059562 -2.1862 -0.0013311 -1.2079 -0.00073545 608.841892705001 101.17 0.14029 94.992 94.923 95.064 -6.1757 14 8 2 0 0 0 0.62338 1 67824 67824 10.151 2.8613 1 50991000 + 47479 25241 31937 32680 55460 55460 0.073195970372808 PSFGVMVFPGY 11 Unmodified _PSFGVMVFPGY_ 0 0 0 REV__ENST00000496479.5_1_3:37095344-37107514:-|nuORF REV__ENST00000496479.5_1_3:37095344-37107514:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8636779785156 3 400.863449 1199.56852 1.2552 0.00050316 -1.9988 -0.00080123 -0.74357 -0.00029807 401.1971639740965 20.475 0.3419 17.782 17.646 17.988 -2.693 34 19 2 0 0 0 0.68427 1 10946 10946 2.6312 0 1 1620100 + 47480 27964 31938 32681 55461 55461 -0.02328446114597682 PSFHKVDLL 9 Unmodified _PSFHKVDLL_ 0 0 0 REV__ENSG00000004776|ENST00000004982|HSPB6 REV__ENSG00000004776|ENST00000004982|HSPB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5345153808594 3 352.53432 1054.58113 -0.30267 -0.0001067 0.27208 9.5918E-05 -0.030588 -1.0783E-05 352.53449645011153 22.919 0.19959 22.919 22.816 23.015 0 18 11 2 0 0 0 0.53557 1 11670 11670 5.2969 0 1 1585500 + 47481 16948 31939 32682 55462 55462 0.05602333339948018 PSFIFPFSL 9 Unmodified _PSFIFPFSL_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7817993164062 2 527.784036 1053.55352 NaN NaN NaN NaN NaN NaN NaN 54.878 1 54.809 54.309 55.309 -0.068737 0 0 0 0.39043 1 29812 29812 20.454 0.039092 1 + 47482 21586 31940 32683 55463 55463 0.028884300797017204 PSFIMPFK 8 Unmodified _PSFIMPFK_ 0 0 0 ENSG00000189050|ENST00000305783|RNFT1;ENST00000486103.6_1_17:58031378-58035783:-|nuORF ENSG00000189050|ENST00000305783|RNFT1 ENSG00000189050|ENST00000305783|RNFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.5065307617188 1 966.511737 965.50446 0.85985 0.00083105 -4.1666 -0.0040271 -3.3067 -0.003196 966.5082656652482 99.362 0.14839 93.186 93.113 93.261 -6.1757 15 9 2 0 0 0 0.26159 1 66144 66144 60.39 1.7107 1 43555000 47483 9725 31941 32684 55464 55464 0.020328185191146986 PSFLTDTEDGY 11 Unmodified _PSFLTDTEDGY_ 0 0 0 REV__ENSG00000177409|ENST00000318238|SAMD9L REV__ENSG00000177409|ENST00000318238|SAMD9L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7697143554688 2 622.769508 1243.52446 NaN NaN NaN NaN NaN NaN NaN 55.262 1 55.262 54.762 55.762 0 0 0 0 0.85601 1 30695 30695 9.3831 4.0862 1 + 47484 22981 31942 32685 55465 55465 -0.08755803797885164 PSFNDMKFE 9 Unmodified _PSFNDMKFE_ 0 0 0 REV__nc|ENSG00000197579|Q9NS56-2|TOPORS REV__nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.29541015625 2 557.747324 1113.4801 -0.13225 -7.376E-05 -4.1483 -0.0023137 -4.2806 -0.0023875 557.7452908562507 34.992 0.24731 34.77 34.711 34.958 -0.2224 13 10 2 0 0 0 0.21185 1 18306 18306 6.2058 1.4498 1 790260 + 47485 23940 31943 32686 55466 55466 -0.07210486425083218 PSFPDLFSF 9 Unmodified _PSFPDLFSF_ 0 0 0 REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7518920898438 2 528.755475 1055.4964 0.30057 0.00015893 -1.1879 -0.00062812 -0.88735 -0.00046919 528.7548663867498 55.356 0.84756 54.878 54.733 55.58 -0.47798 85 40 5 0 0 0 0.30562 1 30360 30360 16.942 4.7016 1 49290000 + 47486 20995 31944 32687 55467 55467 -0.029130371966630264 PSFPSEILSL 10 Unmodified _PSFPSEILSL_ 0 0 0 ENST00000368474.8_1_1:154556801-154556882:-|nuORF ENST00000368474.8_1_1:154556801-154556882:-|nuORF ENST00000368474.8_1_1:154556801-154556882:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2957153320312 2 545.294965 1088.57538 2.1741 0.0011855 0.15001 8.1801E-05 2.3241 0.0012673 545.2949167522115 95.531 0.27188 95.535 95.379 95.651 0.0041504 26 10 3 0 0 0 0.35903 1 53071 53071 24.021 4.7636 1 1674200 47487 12269 31945 32688 55468 55468 0.034631900376325575 PSFRAAWDFK 10 Unmodified _PSFRAAWDFK_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.209716796875 3 408.876857 1223.60874 NaN NaN NaN NaN NaN NaN NaN 16.25 1 16.25 15.75 16.75 0 0 0 0 0.99388 1 7906 7906 0.56317 0 1 + 47488 21189 31946 32689 55469 55469 0.005882366001742412 PSFRWHPY 8 Unmodified _PSFRWHPY_ 0 0 0 REV__ENST00000370803.7_1_X:133507308-133511628:+|nuORF REV__ENST00000370803.7_1_X:133507308-133511628:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7897338867188 2 545.266876 1088.5192 -0.023773 -1.2963E-05 -1.8715 -0.0010204 -1.8952 -0.0010334 545.2661244731728 43.263 0.22619 42.953 42.799 43.025 -0.31039 17 10 2 0 0 0 8.7369 1 23027 23027 19.439 1.304 1 6698300 + 47489 26066 31947 32690 55470 55470 -0.021519732885280973 PSFSSSWLY 9 Unmodified _PSFSSSWLY_ 0 0 0 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2484741210938 2 537.250557 1072.48656 NaN NaN NaN NaN NaN NaN NaN 27.684 1 27.713 27.213 28.213 0.028664 0 0 0 0.7453 1 14393 14393 7.9102 1.187 1 + 47490 23346 31948 32691 55471 55471 -0.04678225202019348 PSFSVSPGG 9 Unmodified _PSFSVSPGG_ 0 0 0 nc|ENSG00000211638|A0A075B6I0|IGLV8-61 nc|ENSG00000211638|A0A075B6I0|IGLV8-61 nc|ENSG00000211638|A0A075B6I0|IGLV8-61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.395263671875 1 834.399209 833.391933 -0.11748 -9.8025E-05 0.3902 0.00032558 0.27272 0.00022755 834.3995266506383 53.963 0.53735 53.496 53.246 53.784 -0.46664 41 26 2 0 0 0 0.026094 3 29125 29125;29230;29341 57.471 13.064 1 1825700 47491 16520 31949 32692 55472;55473;55474 55472 -0.03142738953363278 PSFTKLFDKI 10 Unmodified _PSFTKLFDKI_ 0 0 0 REV__ENST00000537802.5_1_13:111301459-111315833:-|nuORF REV__ENST00000537802.5_1_13:111301459-111315833:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3394165039062 2 598.339707 1194.66486 0.36639 0.00021923 0.36686 0.00021951 0.73325 0.00043873 598.3397871259472 83.237 0.81413 77.061 76.571 77.385 -6.1757 92 43 3 0 0 0 0.087043 2 54846 54717;54846 49.554 5.7819 1 23575000 + 47492 20023 31950 32693 55475;55476 55476 0.0753144471698306 PSFVFMDHY 9 Unmodified _PSFVFMDHY_ 0 0 0 ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-4|PTCHD4 ENSG00000244694|ENST00000339488|PTCHD4 ENSG00000244694|ENST00000339488|PTCHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7528076171875 2 571.75241 1141.49027 0.20426 0.00011679 1.7158 0.00098101 1.9201 0.0010978 571.7537708001532 65.767 0.51923 65.283 65 65.52 -0.48428 86 22 5 0 0 0 0.39863 1 36006 36006 12.532 0.29089 1 89467000 47493 10733 31951 32694 55477 55477 -0.07481878699832123 PSFVTELYI 9 Unmodified _PSFVTELYI_ 0 0 0 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MSMS AL20221201_MKP_PDAC_01 4 534.7845458984375 2 534.784233 1067.55391 NaN NaN NaN NaN NaN NaN NaN 96.87 1 90.695 90.195 91.195 -6.1757 0 0 0 0.14 1 64196 64196 37.974 5.6685 1 47494 16108 31952 32695 55478 55478 0.02283805008892159 PSGAALFEVA 10 Unmodified _PSGAALFEVA_ 0 0 0 REV__ENSG00000187773|ENST00000343998|DIPK1C REV__ENSG00000187773|ENST00000343998|DIPK1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.3921508789062 1 961.498923 960.491647 0.96368 0.00092657 0.32709 0.00031449 1.2908 0.0012411 961.498608515389 71.781 0.61732 65.606 65.324 65.941 -6.1757 111 33 4 0 0 0 0.63399 1 46752 46752 9.3831 0 1 519740000 + 47495 23660 31953 32696 55479 55479 0.00982078660570096 PSGAELERQQ 10 Unmodified _PSGAELERQQ_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7809448242188 2 557.778002 1113.54145 1.2375 0.00069027 -2.7413 -0.0015291 -1.5038 -0.0008388 557.775528386796 50.255 0.9464 44.716 44.251 45.198 -5.5391 135 60 4 0 0 0 0.015688 2 31435 31296;31435 79.596 7.3552 1 165620000 47496 4794 31954 32697 55480;55481 55481 -0.010778384014201947 PSGCPCLC 8 Unmodified _PSGCPCLC_ 0 0 0 REV__ENST00000176763.9_1_5:171520696-171520777:-|nuORF REV__ENST00000176763.9_1_5:171520696-171520777:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1481628417969 2 390.147877 778.281202 NaN NaN NaN NaN NaN NaN NaN 4.5486 1 2.0667 1.5667 2.5667 -2.482 0 0 0 0.97444 1 2309 2309 0.69038 0 1 + 47497 24720 31955 32698 55482 55482 -0.11680741529119132 PSGEGESSYY 10 Unmodified _PSGEGESSYY_ 0 0 0 REV__ENSG00000153975|ENST00000368576|ZUP1 REV__ENSG00000153975|ENST00000368576|ZUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.215087890625 2 538.214369 1074.41418 0.37229 0.00020037 -0.083982 -4.52E-05 0.28831 0.00015517 538.2146657299224 66.252 0.3795 66.252 66.091 66.47 0 50 16 4 0 0 0 0.62068 1 37004 37004 10.074 1.4806 1 6880900 + 47498 21199 31956 32699 55483 55483 -0.12004604066282809 PSGFHCFL 8 Unmodified _PSGFHCFL_ 0 0 0 REV__nc|ENSG00000118523|P29279-2|CCN2 REV__nc|ENSG00000118523|P29279-2|CCN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 454.6031494140625 2 454.210181 906.405809 1.2167 0.00055264 3.1562 0.0014336 4.3729 0.0019862 454.21181781526826 19.97 0.14721 17.314 17.257 17.404 -2.6564 10 7 2 0 0 0 8.7369 1 10646 10646 20.871 0.41758 1 984490 + 47499 19158 31957 32700 55484 55484 -0.05113784725938331 PSGGLEDYV 9 Unmodified _PSGGLEDYV_ 0 0 0 REV__nc|ENSG00000196843|Q03989-5|ARID5A REV__nc|ENSG00000196843|Q03989-5|ARID5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.4347534179688 1 936.430903 935.423627 0.25996 0.00024343 -0.10545 -9.875E-05 0.1545 0.00014468 936.4308776445314 38.118 0.35494 38.118 37.865 38.22 0 39 17 3 0 0 0 0.55144 1 20229 20229 4.3292 1.7518 1 8600700 + 47500 23874 31958 32701 55485 55485 -0.046667909900975246 PSGPLEALT 9 Unmodified _PSGPLEALT_ 0 0 0 REV__nc|ENSG00000133318|O95197-7|RTN3 REV__nc|ENSG00000133318|O95197-7|RTN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2674865722656 2 442.739825 883.465098 1.5086 0.00066792 0.2953 0.00013074 1.8039 0.00079866 442.7399877134444 33.972 0.52433 29.986 29.66 30.184 -3.9853 33 28 2 0 0 0 0.19205 1 19590 19590 6.2058 0 1 4315600 + 47501 19921 31959 32702 55486 55486 0.018703897692262217 PSGTYMEDL 9 Unmodified _PSGTYMEDL_ 0 0 0 ENSG00000189108|ENST00000372582|IL1RAPL2 ENSG00000189108|ENST00000372582|IL1RAPL2 ENSG00000189108|ENST00000372582|IL1RAPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7184448242188 2 506.718233 1011.42191 0.063921 3.239E-05 1.0139 0.00051375 1.0778 0.00054614 506.7187811947979 53.456 0.22844 53.005 52.859 53.087 -0.45173 13 10 2 0 0 0 0.49272 1 28949 28949 7.9102 0.62092 1 1094900 47502 9730 31960 32703 55487 55487 -0.08334168070359738 PSGWEGGGP 9 Unmodified _PSGWEGGGP_ 0 0 0 REV__ENST00000457235.5_3_7:143078502-143078607:+|nuORF REV__ENST00000457235.5_3_7:143078502-143078607:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 843.3640747070312 1 843.363158 842.355882 -0.37649 -0.00031752 0.95596 0.00080622 0.57947 0.0004887 843.3639193567326 52.064 0.24675 52.064 51.953 52.199 0 16 10 2 0 0 0 0.042911 1 28777 28777 48.346 18.121 1 4447900 + 47503 27265 31961 32704 55488 55488 -0.0716019613022354 PSGWEQALS 9 Unmodified _PSGWEQALS_ 0 0 0 REV__ENST00000352645.4_1_22:41754676-41754982:+|nuORF REV__ENST00000352645.4_1_22:41754676-41754982:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.4644775390625 1 974.457787 973.45051 0.63548 0.00061925 -0.21048 -0.00020511 0.425 0.00041414 974.4574859312413 60.047 0.56584 53.933 53.65 54.216 -6.1147 63 30 3 0 0 0 0.32871 1 38527 38527 15.847 1.9411 1 94955000 + 47504 25786 31962 32705 55489 55489 -0.03727682378917052 PSHCGPGLGGP 11 Unmodified _PSHCGPGLGGP_ 0 0 0 ENST00000456170.5_1_1:44686783-44687191:-|nuORF ENST00000456170.5_1_1:44686783-44687191:-|nuORF ENST00000456170.5_1_1:44686783-44687191:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2698974609375 2 489.726726 977.4389 -0.40908 -0.00020034 -1.0259 -0.00050242 -1.435 -0.00070275 489.7263350604337 33.214 0.4659 33.214 32.968 33.434 0 76 23 4 0 0 0 0.28528 1 17368 17368 10.074 4.3135 1 27459000 47505 13594 31963 32706 55490 55490 -0.0507220267388675 PSHFPGDSF 9 Unmodified _PSHFPGDSF_ 0 0 0 REV__ENST00000494757.5_1_17:38434473-38434674:+|nuORF REV__ENST00000494757.5_1_17:38434473-38434674:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.8033142089844 2 495.719424 989.424296 1.2711 0.00063013 1.7775 0.00088113 3.0486 0.0015113 495.7208116323788 36.061 0.25137 31.868 31.678 31.93 -4.1928 21 15 2 0 0 0 0.1474 1 21018 21018 28.487 1.6032 1 4456600 + 47506 27941 31964 32707 55491 55491 -0.07083951550373513 PSHFTPHPAF 10 Unmodified _PSHFTPHPAF_ 0 0 0 REV__ENST00000335325.8_1_16:75142821-75143286:+|nuORF REV__ENST00000335325.8_1_16:75142821-75143286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2765502929688 2 569.277441 1136.54033 0.33542 0.00019095 -3.8309 -0.0021809 -3.4955 -0.0019899 569.2756229239212 79.74 0.36478 79.74 79.546 79.911 0 23 14 2 0 0 0 0.68719 1 44329 44329 4.3292 0.38484 1 690560 + 47507 25635 31965 32708 55492 55492 -0.022480079796878272 PSHGDRSYLF 10 Unmodified _PSHGDRSYLF_ 0 0 0 REV__nc|ENSG00000060656|Q92729|PTPRU REV__nc|ENSG00000060656|Q92729|PTPRU MSMS AL20221201_MKP_PDAC_01 4 589.7816162109375 2 589.783087 1177.55162 NaN NaN NaN NaN NaN NaN NaN 100.82 1 94.647 94.147 95.147 -6.1757 0 0 0 0.47175 1 67526 67526 27.629 4.4804 1 + 47508 29497 31966 32709 55493 55493 -0.030052306761945147 PSHLSLLAL 9 Unmodified _PSHLSLLAL_ 0 0 0 REV__ENST00000583487.1_1_17:27186296-27187766:+|nuORF REV__ENST00000583487.1_1_17:27186296-27187766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7868041992188 2 475.78711 949.559667 0.17558 8.3539E-05 -0.37259 -0.00017728 -0.19701 -9.3736E-05 475.7870085682031 70.145 0.30449 69.666 69.515 69.819 -0.47903 40 17 3 0 0 0 0.016184 2 38310 38310;38421 67.344 6.9543 1 8751300 + 47509 29079 31967 32710 55494;55495 55494 0.08286948311229025 PSHMQWQLLY 10 Unmodified _PSHMQWQLLY_ 0 0 0 REV__ENSG00000103184|ENST00000251170|SEC14L5 REV__ENSG00000103184|ENST00000251170|SEC14L5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825073242188 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 24.469 1 24.469 23.969 24.969 0 0 0 0 0.96981 1 12507 12507 1.9064 0.57673 1 + 47510 18289 31968 32711 55496 55496 -0.016068539630168743 PSHMQWQLLY 10 Unmodified _PSHMQWQLLY_ 0 0 0 REV__ENSG00000103184|ENST00000251170|SEC14L5 REV__ENSG00000103184|ENST00000251170|SEC14L5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8819885253906 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 36.946 1 36.946 36.446 37.446 0 0 0 0 0.96981 1 19624 19624 1.9064 0.57673 1 + 47511 18289 31968 32711 55497 55497 -0.016068539630168743 PSHPDYRA 8 Unmodified _PSHPDYRA_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MSMS AL20221201_MKP_PDAC_01 4 471.7248840332031 2 471.725041 941.435529 NaN NaN NaN NaN NaN NaN NaN 19.528 1 16.872 16.372 17.372 -2.6564 0 0 0 0.83735 1 10352 10352 21.537 0 1 47512 10649 31969 32712 55498 55498 -0.03753129456254101 PSHTKIKY 8 Unmodified _PSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2777709960938 2 487.276909 972.539266 -0.38378 -0.00018701 1.5256 0.00074341 1.1419 0.0005564 487.27773237547393 19.208 0.12471 19.232 19.163 19.288 0.023106 10 6 2 0 0 0 0.38756 1 9676 9676 45.7 23.953 1 876850 47513 6051 31970 32713 55499 55499 0.0518977765142381 PSHTKIKY 8 Unmodified _PSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2779541015625 2 487.276909 972.539266 0.31062 0.00015136 0.67234 0.00032761 0.98296 0.00047897 487.2773032095183 19.349 0.13401 19.356 19.28 19.414 0.0078506 12 7 2 0 0 0 0.3526 1 9830 9830 49.554 30.297 1 1323100 47514 6051 31970 32713 55500 55500 0.0518977765142381 PSHTKIKY 8 Unmodified _PSHTKIKY_ 0 0 0 ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15 ENST00000539856.5_1_11:94704113-94705349:-|nuORF ENST00000539856.5_1_11:94704113-94705349:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2776184082031 2 487.276909 972.539266 1.2051 0.0005872 -0.31261 -0.00015233 0.89244 0.00043487 487.27673702776787 21.606 0.34221 18.872 18.711 19.054 -2.7348 62 22 4 0 0 0 0.15437 1 11665 11665 85.642 57.155 1 23219000 47515 6051 31970 32713 55501 55501 0.0518977765142381 PSHYPPYFTSY 11 Unmodified _PSHYPPYFTSY_ 0 0 0 REV__ENSG00000164600|ENST00000297142|NEUROD6 REV__ENSG00000164600|ENST00000297142|NEUROD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.8069458007812 2 679.806228 1357.5979 1.6395 0.0011146 -1.0989 -0.00074704 0.54065 0.00036754 679.8057932953267 64.071 0.6626 57.895 57.579 58.241 -6.1757 127 35 5 0 0 0 0.65108 1 41479 41479 8.7454 0.58988 1 166760000 + 47516 21927 31971 32714 55502 55502 -0.06659210564771456 PSIFHDASYP 10 Unmodified _PSIFHDASYP_ 0 0 0 nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.266357421875 2 567.266739 1132.51892 0.83584 0.00047414 -0.89425 -0.00050728 -0.058407 -3.3133E-05 567.2661705993777 75.615 0.54745 75.138 74.957 75.505 -0.47714 56 26 4 0 0 0 0.5802 1 41432 41432 13.906 5.1606 1 6081100 47517 535 31972 32715 55503 55503 -0.042034377990376015 PSIFYTNK 8 Unmodified _PSIFYTNK_ 0 0 0 REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF REV__ENST00000480128.1_1_12:46233959-46234175:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 969.5089111328125 1 969.504009 968.496732 0.75071 0.00072782 3.2635 0.003164 4.0142 0.0038918 969.5071235821214 101.32 0.071297 95.147 95.091 95.163 -6.1757 5 3 2 0 0 0 0.28079 1 67961 67961 57.471 7.8024 1 7295300 + 47518 27665 31973 32716 55504 55504 0.011223825231695628 PSIKQLKY 8 Unmodified _PSIKQLKY_ 0 0 0 REV__ENST00000444025.1_1_7:23602199-23602811:-|nuORF REV__ENST00000444025.1_1_7:23602199-23602811:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.8141479492188 2 488.794935 975.575317 0.92801 0.00045361 -1.6816 -0.00082198 -0.75363 -0.00036837 488.7942250473089 60.119 0.35188 54.004 53.886 54.238 -6.1147 23 17 2 0 0 0 8.7369 1 38744 38744 7.2892 0 1 23240000 + 47519 27118 31974 32717 55505 55505 0.08655234828268021 PSIMEQEKEN 10 Unmodified _PSIMEQEKEN_ 0 0 0 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7803955078125 2 602.779353 1203.54415 0.75624 0.00045584 -1.444 -0.00087043 -0.68779 -0.00041458 602.778372379539 81.39 0.29816 80.898 80.792 81.091 -0.49247 22 12 2 0 0 0 0.27276 1 44576 44576 29.082 0 1 1209700 + 47520 29561 31975 32718 55506 55506 -0.04947751058762151 PSIMEQEKEN 10 Unmodified _PSIMEQEKEN_ 0 0 0 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 602.779353 1203.54415 -0.08954 -5.3973E-05 -0.87825 -0.00052939 -0.96779 -0.00058336 602.7792731902044 80.861 0.32346 80.861 80.7 81.024 0 -0.018124 0.0003976 NaN 29.082 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 417500 + 47521 29561 31975 32718 -0.04947751058762151 PSIQDQCAKY 10 Unmodified _PSIQDQCAKY_ 0 0 0 ENSG00000163376|ENST00000417314|KBTBD8 ENSG00000163376|ENST00000417314|KBTBD8 ENSG00000163376|ENST00000417314|KBTBD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7713623046875 2 576.771331 1151.52811 NaN NaN NaN NaN NaN NaN NaN 75.229 1 75.275 74.775 75.775 0.045959 0 0 0 0.75165 1 41483 41483 14.405 0 1 47522 6985 31976 32719 55507 55507 -0.04159412505032378 PSIREQWWRWN 11 Unmodified _PSIREQWWRWN_ 0 0 0 ENST00000510393.5_1_1:16083148-16084686:+|nuORF ENST00000510393.5_1_1:16083148-16084686:+|nuORF ENST00000510393.5_1_1:16083148-16084686:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 779.3861083984375 2 779.389116 1556.76368 NaN NaN NaN NaN NaN NaN NaN 74.742 1 74.742 74.242 75.242 0 0 0 0 0.94201 1 41586 41586 1.0715 0.80244 1 47523 14588 31977 32720 55508 55508 0.007568607346001954 PSISITLST 9 Unmodified _PSISITLST_ 0 0 0 nc|ENSG00000122591|Q9BYI3-2|HYCC1;ENSG00000122591|ENST00000432176|HYCC1 nc|ENSG00000122591|Q9BYI3-2|HYCC1 nc|ENSG00000122591|Q9BYI3-2|HYCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.5143432617188 1 918.514239 917.506963 0.19161 0.00017599 0.56102 0.0005153 0.75262 0.0006913 918.5151053894291 70.957 0.24297 70.48 70.368 70.611 -0.47735 14 10 2 0 0 0 0.2143 1 38828 38828 21.747 9.2151 1 693610 47524 3649 31978 32721 55509 55509 0.04490945457757789 PSIVNLEMTI 10 Unmodified _PSIVNLEMTI_ 0 0 0 REV__ENST00000373768.3_1_9:124914566-124914674:-|nuORF REV__ENST00000373768.3_1_9:124914566-124914674:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5397033691406 3 372.870492 1115.58965 1.7553 0.00065449 -0.61059 -0.00022767 1.1447 0.00042682 372.8703865191113 21.428 0.46965 18.694 18.465 18.935 -2.7348 110 39 4 0 0 0 0.66569 1 11555 11555 3.5871 0 1 38267000 + 47525 26160 31979 32722 55510 55510 0.03647519194259985 PSIVRCVPGV 10 Unmodified _PSIVRCVPGV_ 0 0 0 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8138427734375 2 513.791869 1025.56919 0.42556 0.00021865 -0.29931 -0.00015378 0.12626 6.4869E-05 513.7916460627791 75.569 0.1693 75.617 75.537 75.707 0.047943 13 7 2 0 0 0 0.23325 1 41693 41693 10.074 1.4806 1 614650 47526 5629 31980 32723 55511 55511 0.05742393325112971 PSIWSQIWLC 10 Unmodified _PSIWSQIWLC_ 0 0 0 ENST00000393784.7_1_5:172377864-172378200:+|nuORF ENST00000393784.7_1_5:172377864-172378200:+|nuORF ENST00000393784.7_1_5:172377864-172378200:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3087768554688 2 616.810259 1231.60597 -0.20135 -0.00012419 0.23614 0.00014566 0.034795 2.1462E-05 616.808995611389 29.74 0.11753 29.74 29.643 29.76 0 7 5 2 0 0 0 0.23862 1 15415 15415 3.9444 0 1 1893900 47527 12715 31981 32724 55512 55512 -0.0005735484896831622 PSKDDADHHF 10 Unmodified _PSKDDADHHF_ 0 0 0 ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7550659179688 2 584.754527 1167.4945 NaN NaN NaN NaN NaN NaN NaN 62.123 1 62.123 61.623 62.623 0 0 0 0 0.85122 1 34642 34642 10.074 3.7198 1 47528 10893 31982 32725 55513 55513 -0.08254697952588685 PSKDQDHQSF 10 Unmodified _PSKDQDHQSF_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2628784179688 2 594.767634 1187.52072 0.2658 0.00015809 1.2607 0.00074981 1.5265 0.0009079 594.767867900177 56.699 1.2801 50.722 50.25 51.53 -5.9769 165 65 4 0 0 0 0.27276 1 36051 36051 29.082 8.628 1 242930000 + 47529 21053 31983 32726 55514 55514 -0.06554428781100796 PSKHQYDF 8 Unmodified _PSKHQYDF_ 0 0 0 REV__LLGL1|p.R628H|1|0.08|ENSG00000131899|chr17:18237752-18237752|G/A|missense_variant REV__LLGL1|p.R628H|1|0.08|ENSG00000131899|chr17:18237752-18237752|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2440490722656 2 511.240524 1020.46649 -0.37778 -0.00019314 3.8347 0.0019605 3.4569 0.0017673 511.24248854166484 33.185 0.49441 33.185 32.87 33.365 0 55 24 4 0 0 0 0.63229 1 17427 17427 23.148 1.4018 1 12272000 + 47530 29452 31984 32727 55515 55515 -0.04291976142008025 PSKKMKLF 8 Unmodified _PSKKMKLF_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2;nc|ENSG00000037474|Q08J23-3|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MSMS AL20221201_MKP_PDAC_01 4 489.7947692871094 2 489.793881 977.573209 NaN NaN NaN NaN NaN NaN NaN 50.287 1 44.748 44.248 45.248 -5.5391 0 0 0 0.51139 1 31525 31525 39.957 11.784 1 47531 627 31985 32728 55516 55516 0.08352482818816043 PSKRGQKP 8 Unmodified _PSKRGQKP_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2746887207031 2 449.266876 896.519199 0.75168 0.00033771 2.4187 0.0010866 3.1704 0.0014243 449.2673470400986 78.51 0.37482 78.562 78.226 78.601 0.052452 25 15 2 0 0 0 8.7369 1 43378 43378 7.2892 0 1 2754500 47532 6169 31986 32729 55517 55517 0.06680026711478604 PSLAELETI 9 Unmodified _PSLAELETI_ 0 0 0 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 ENSG00000174358|ENST00000304460|SLC6A19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7658081054688 2 486.76604 971.517527 0.24099 0.0001173 0.71149 0.00034633 0.95248 0.00046363 486.7665240770738 76.306 0.3139 76.306 76.2 76.514 0 20 12 2 0 0 0 0.43463 1 42435 42435 10.824 0 1 677250 47533 8414 31987 32730 55518 55518 0.030629281121946406 PSLAVPMLL 9 Unmodified _PSLAVPMLL_ 0 0 0 REV__ENST00000586276.5_1_17:42931463-42937758:-|nuORF REV__ENST00000586276.5_1_17:42931463-42937758:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7474670410156 2 470.780439 939.546325 0.44085 0.00020755 1.7143 0.00080707 2.1552 0.0010146 470.7810549410969 39.437 0.18639 39.437 39.302 39.488 0 13 8 2 0 0 0 0.13712 1 21062 21062 23.148 2.6948 1 1917100 + 47534 29109 31988 32731 55519 55519 0.07413374207646939 PSLDLSSISF 10 Unmodified _PSLDLSSISF_ 0 0 0 REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 355.866943359375 3 355.853607 1064.53899 1.2352 0.00043953 0.65145 0.00023182 1.8866 0.00067135 355.85379847934615 32.816 0.24676 28.96 28.814 29.061 -3.8562 26 13 2 0 0 0 0.23227 1 18786 18786 6.1918 2.8722 1 8325800 + 47535 28179 31989 32732 55520 55520 0.009303131409069465 PSLDLSSISF 10 Unmodified _PSLDLSSISF_ 0 0 0 REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF REV__ENST00000513372.5_1_4:2256680-2256926:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 355.853607 1064.53899 -0.04271 -1.5198E-05 1.6422 0.00058437 1.5994 0.00056917 355.8543727811715 29.248 0.095341 29.278 29.204 29.299 0.030106 0.15894 0.00093345 NaN 6.1918 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1252300 + 47536 28179 31989 32732 0.009303131409069465 PSLDSEFYK 9 Unmodified _PSLDSEFYK_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2617797851562 2 543.261122 1084.50769 0.1823 9.9036E-05 -0.0018117 -9.8421E-07 0.18049 9.8052E-05 543.2610742904843 94.144 0.5738 93.723 93.457 94.031 -0.42044 118 30 5 0 0 0 0.2143 1 51534 51534 21.747 3.6117 1 45590000 47537 6094 31990 32733 55521 55521 -0.03118259893199138 PSLDSEFYK 9 Unmodified _PSLDSEFYK_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 543.261122 1084.50769 1.8643 0.0010128 0.8681 0.0004716 2.7324 0.0014844 543.2614981566296 93.594 0.25169 93.617 93.518 93.77 0.022987 -0.05323 0.00066028 NaN 21.747 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1160200 47538 6094 31990 32733 -0.03118259893199138 PSLEAILNY 9 Unmodified _PSLEAILNY_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.27392578125 2 510.274032 1018.53351 0.24755 0.00012632 -2.1989 -0.0011221 -1.9514 -0.00099574 510.27349038333296 62.316 0.29319 62.316 62.072 62.365 0 35 15 3 0 0 0 0.14602 1 34695 34695 28.487 3.0875 1 4486900 47539 4494 31991 32734 55522 55522 0.02498634349092299 PSLEFVPVF 9 Unmodified _PSLEFVPVF_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7794189453125 2 517.781493 1033.54843 0.60217 0.00031179 1.1265 0.00058329 1.7287 0.00089508 517.7817213292296 47.281 0.3209 46.928 46.722 47.042 -0.3526 22 15 2 0 0 0 0.070838 1 25315 25315 39.957 10.876 1 3541800 + 47540 23799 31992 32735 55523 55523 0.033001262170728296 PSLFFPQIVEY 11 Unmodified _PSLFFPQIVEY_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3494873046875 2 670.350271 1338.68599 0.050126 3.3602E-05 -1.2743 -0.0008542 -1.2241 -0.00082059 670.3493051293185 61.549 0.19433 61.059 60.986 61.18 -0.48932 12 8 2 0 0 0 0.42108 1 33572 33572 20.415 0 1 643570 + 47541 20883 31993 32736 55524 55524 0.03019410025876823 PSLFRGVSSI 10 Unmodified _PSLFRGVSSI_ 0 0 0 REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781 REV__nc|ENSG00000290988|Q8N8C0-2|ZNF781 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 355.1912536621094 3 354.869591 1061.58694 1.1238 0.0003988 -0.35752 -0.00012687 0.76628 0.00027193 354.86950287511206 46.493 0.27175 41.412 41.23 41.502 -5.0805 47 29 2 0 0 0 0.19886 1 28746 28746 21.799 11 1 62376000 + 47542 30035 31994 32737 55525 55525 0.05861431851622001 PSLGHLESSDY 11 Unmodified _PSLGHLESSDY_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8048706054688 2 602.777667 1203.54078 0.75624 0.00045584 1.352 0.00081498 2.1083 0.0012708 602.778372379539 81.39 0.29816 80.898 80.792 81.091 -0.49247 22 12 2 0 0 0 0.28953 1 44553 44553 13.042 0.80181 1 1209700 47543 9114 31995 32738 55526 55526 -0.05284677841132179 PSLHKNKWYRN 11 Unmodified _PSLHKNKWYRN_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.5932312011719 3 481.593232 1441.75787 -0.39385 -0.00018967 0.39379 0.00018965 -6.1928E-05 -2.9824E-08 481.59338225995043 36.319 0.24522 36.069 35.927 36.172 -0.2497 42 10 5 0 0 0 0.69509 1 19022 19022 4.7159 0.59929 1 30860000 + 47544 22989 31996 32739 55527 55527 0.05465762222934245 PSLHKNKWYRN 11 Unmodified _PSLHKNKWYRN_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 721.8880004882812 2 721.88621 1441.75787 1.0302 0.00074371 -0.77053 -0.00055624 0.2597 0.00018747 721.8855776174311 40.865 0.39828 36.257 36.034 36.432 -4.6079 59 24 3 0 0 0 0.58245 1 24533 24533 15.248 3.0078 1 24953000 + 47545 22989 31996 32739 55528 55528 0.05465762222934245 PSLHKNKWYRN 11 Unmodified _PSLHKNKWYRN_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 481.593232 1441.75787 0.39507 0.00019026 -0.83939 -0.00040424 -0.44432 -0.00021398 481.9270673551783 36.057 0.17319 36.057 35.957 36.131 0 0.023667 -0.0012742 NaN 4.7159 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 6349400 + 47546 22989 31996 32739 0.05465762222934245 PSLHKNKWYRN 11 Unmodified _PSLHKNKWYRN_ 0 0 0 REV__ENSG00000177511|ENST00000324000|ST8SIA3 REV__ENSG00000177511|ENST00000324000|ST8SIA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 481.593232 1441.75787 -0.39385 -0.00018967 0.39379 0.00018965 -6.1928E-05 -2.9824E-08 481.59338225995043 36.319 0.24522 36.069 35.927 36.172 -0.2497 0.036111 0.0005075 NaN 4.7159 42 10 5 NaN NaN NaN NaN 0 NaN NaN 0 30860000 + 47547 22989 31996 32739 0.05465762222934245 PSLHLSVYS 9 Unmodified _PSLHLSVYS_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7657470703125 2 501.766374 1001.5182 -0.33853 -0.00016986 1.0742 0.00053899 0.73566 0.00036913 501.76701183435614 33.087 0.17818 33.087 32.988 33.166 0 14 8 2 0 0 0 0.2143 1 17313 17313 21.747 1.293 1 2011800 + 47548 17386 31997 32740 55529 55529 0.01749767551905279 PSLHLSVYS 9 Unmodified _PSLHLSVYS_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7662048339844 2 501.766374 1001.5182 -0.57954 -0.00029079 1.4411 0.00072311 0.86158 0.00043231 501.7670390072709 33.166 0.2579 33.007 32.86 33.118 -0.15918 29 10 4 0 0 0 0.14602 1 17283 17283 28.487 1.6032 1 3503600 + 47549 17386 31997 32740 55530 55530 0.01749767551905279 PSLHLSVYS 9 Unmodified _PSLHLSVYS_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 501.766374 1001.5182 -0.33853 -0.00016986 1.0742 0.00053899 0.73566 0.00036913 501.76701183435614 33.087 0.17818 33.087 32.988 33.166 0 0.040003 -0.00027711 NaN 28.487 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2011800 + 47550 17386 31997 32740 0.01749767551905279 PSLHLSVYS 9 Unmodified _PSLHLSVYS_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.766374 1001.5182 -0.57954 -0.00029079 1.4411 0.00072311 0.86158 0.00043231 501.7670390072709 33.166 0.2579 33.007 32.86 33.118 -0.15918 -0.040003 9.112E-05 NaN 28.487 29 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3503600 + 47551 17386 31997 32740 0.01749767551905279 PSLHNLESF 9 Unmodified _PSLHNLESF_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.759033203125 2 522.261456 1042.50836 0.55745 0.00029113 -3.213 -0.001678 -2.6555 -0.0013869 522.2601713475507 68.295 0.26296 68.295 68.224 68.487 0 18 11 2 0 0 0 0.17275 1 38079 38079 15.847 5.0233 1 767240 + 47552 21159 31998 32741 55531 55531 -0.011194204534604069 PSLHPVQLHG 10 Unmodified _PSLHPVQLHG_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5355224609375 3 362.201452 1083.58253 -0.06725 -2.4358E-05 0.10552 3.8218E-05 0.038265 1.386E-05 362.2013601975447 23.041 0.18572 23.053 22.957 23.143 0.012394 10 8 2 0 0 0 0.68209 1 11764 11764 4.7159 2.2174 1 2139700 47553 1960 31999 32742 55532 55532 0.04407967428687698 PSLIEYQIF 9 Unmodified _PSLIEYQIF_ 0 0 0 REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|267|2|anti-sense REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|267|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2981567382812 2 555.297507 1108.58046 0.47082 0.00026144 0.28377 0.00015758 0.75459 0.00041902 555.2977245973548 87.155 0.38333 87.155 86.975 87.358 0 49 22 3 0 0 0 0.41742 1 48311 48311 11.64 1.5664 1 835050 + 47554 29436 32000 32743 55533 55533 0.03051493900238711 PSLIEYQIF 9 Unmodified _PSLIEYQIF_ 0 0 0 REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|267|2|anti-sense REV__L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|267|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2989501953125 2 555.297507 1108.58046 1.4667 0.00081448 0.22286 0.00012375 1.6896 0.00093823 555.2976801082671 97.526 0.85765 91.35 90.96 91.817 -6.1757 118 51 3 0 0 0 0.095405 1 64534 64534 34.102 0 1 69483000 + 47555 29436 32000 32743 55534 55534 0.03051493900238711 PSLLGSISI 9 Unmodified _PSLLGSISI_ 0 0 0 ENST00000258796.11_1_7:2701400-2702321:+|nuORF ENST00000258796.11_1_7:2701400-2702321:+|nuORF ENST00000258796.11_1_7:2701400-2702321:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7656555175781 2 443.765843 885.517133 NaN NaN NaN NaN NaN NaN NaN 42.726 1 42.726 42.226 43.226 0 0 0 0 0.12337 1 23151 23151 39.957 3.8303 1 47556 11207 32001 32744 55535 55535 0.06979553183009557 PSLLYIAELSP 11 Unmodified _PSLLYIAELSP_ 0 0 0 REV__ENST00000595181.5_1_19:7702035-7704702:+|nuORF REV__ENST00000595181.5_1_19:7702035-7704702:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5613098144531 3 401.560423 1201.65944 1.0422 0.0004185 1.0405 0.00041781 2.0826 0.00083631 401.5608341543745 83.241 0.55778 77.065 76.808 77.366 -6.1757 69 29 3 0 0 0 0.4121 1 54659 54659 20.871 3.008 1 20046000 + 47557 17599 32002 32745 55536 55536 0.06667721134522253 PSLMVSQSF 9 Unmodified _PSLMVSQSF_ 0 0 0 REV__ENST00000513079.5_1_5:73985169-73989478:+|nuORF REV__ENST00000513079.5_1_5:73985169-73989478:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2455139160156 2 498.24696 994.479368 NaN NaN NaN NaN NaN NaN NaN 50.727 1 50.727 50.227 51.227 0 0 0 0 0.41346 1 27977 27977 19.257 3.4098 1 + 47558 28175 32003 32746 55537 55537 -0.018092810741109133 PSLNTFLRH 9 Unmodified _PSLNTFLRH_ 0 0 0 ENST00000520416.1_1_8:71314518-71314644:-|nuORF ENST00000520416.1_1_8:71314518-71314644:-|nuORF ENST00000520416.1_1_8:71314518-71314644:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.199951171875 3 362.201452 1083.58253 0.84613 0.00030647 -1.3789 -0.00049943 -0.53274 -0.00019296 362.2008620108908 26.147 0.32682 23.196 23.078 23.405 -2.9511 30 18 2 0 0 0 0.47846 1 14459 14459 5.7834 1.6668 1 10850000 47559 14727 32004 32747 55538 55538 0.04407967428710435 PSLPRPIR 8 Unmodified _PSLPRPIR_ 0 0 0 REV__nc|ENSG00000143514|Q13625|TP53BP2;REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2934875488281 2 468.292894 934.571235 NaN NaN NaN NaN NaN NaN NaN 39.815 1 39.82 39.32 40.32 0.0050545 0 0 0 0.4236 1 21216 21216 50.855 0 1 + 47560 30124;20647 32005 32748 55539 55539 0.10133190125213787 PSLQDQLCL 9 Unmodified _PSLQDQLCL_ 0 0 0 REV__nc|ENSG00000122678|Q9NP87-3|POLM REV__nc|ENSG00000122678|Q9NP87-3|POLM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2599792480469 2 508.757692 1015.50083 -0.09171 -4.6658E-05 1.9174 0.00097547 1.8257 0.00092881 508.75892051099004 44.997 0.34162 44.997 44.847 45.189 0 40 14 4 0 0 0 0.25681 1 24572 24572 19.257 3.4098 1 43193000 + 47561 29609 32006 32749 55540 55540 -0.0062989604541598965 PSLRRRKCA 9 Unmodified _PSLRRRKCA_ 0 0 0 REV__nc|ENSG00000163508|O95936|EOMES REV__nc|ENSG00000163508|O95936|EOMES MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.2869262695312 2 543.819284 1085.62402 0.9502 0.00051674 1.1242 0.00061134 2.0744 0.0011281 543.8200666912148 47.324 0.51614 42.243 41.964 42.48 -5.0805 81 34 3 0 0 0 0.20727 1 29419 29419 7.9102 0 1 55744000 + 47562 21772 32007 32750 55541 55541 0.08462824916387035 PSLSHLVVY 9 Unmodified _PSLSHLVVY_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF;ENST00000482051.5_1_2:197742354-197755557:-|nuORF ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.784423828125 2 507.784567 1013.55458 0.060556 3.0749E-05 -0.25667 -0.00013034 -0.19612 -9.9586E-05 507.78435436126455 48.321 0.27882 48.321 48.212 48.491 0 32 13 3 0 0 0 0.095405 1 26487 26487 34.102 0 1 13247000 47563 9910 32008 32751 55542 55542 0.04834644448612835 PSLSSSWSC 9 Unmodified _PSLSSSWSC_ 0 0 0 REV__ENST00000306304.10_1_5:146614653-146619130:+|nuORF REV__ENST00000306304.10_1_5:146614653-146619130:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.3980712890625 1 953.403308 952.396032 0.28559 0.00027228 -3.8908 -0.0037095 -3.6052 -0.0034372 953.4010166396226 28.107 0.10659 24.959 24.896 25.003 -3.1482 6 5 2 0 0 0 0.10734 1 15669 15669 32.305 0 1 2635900 + 47564 25377 32009 32752 55543 55543 -0.08207017521976923 PSLTEILPF 9 Unmodified _PSLTEILPF_ 0 0 0 REV__ENST00000548872.5_1_12:50222327-50222528:+|nuORF REV__ENST00000548872.5_1_12:50222327-50222528:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7872924804688 2 508.786776 1015.559 0.22007 0.00011197 0.97781 0.0004975 1.1979 0.00060946 508.78700699156286 99.73 0.17528 93.555 93.448 93.623 -6.1757 18 11 2 0 0 0 0.087258 1 66524 66524 36.044 1.9418 1 40632000 + 47565 28691 32010 32753 55544 55544 0.05184108871526405 PSLYCPFFSL 10 Unmodified _PSLYCPFFSL_ 0 0 0 ENSG00000027001|ENST00000382172|MIPEP ENSG00000027001|ENST00000382172|MIPEP ENSG00000027001|ENST00000382172|MIPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8595581054688 3 391.859816 1172.55762 -0.44378 -0.0001739 0.39953 0.00015656 -0.044257 -1.7342E-05 391.86003186985505 24.76 0.23572 24.76 24.65 24.885 0 26 11 4 0 0 0 0.62068 1 12641 12641 5.7834 0 1 2283500 47566 564 32011 32754 55545 55545 -0.021758484888778185 PSLYGQHRP 9 Unmodified _PSLYGQHRP_ 0 0 0 REV__ENST00000566621.5_2_15:36871858-36872062:+|nuORF REV__ENST00000566621.5_2_15:36871858-36872062:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.775634765625 2 527.775065 1053.53558 NaN NaN NaN NaN NaN NaN NaN 20.159 1 20.187 19.687 20.687 0.028357 0 0 0 0.83049 1 10195 10195 3.9444 0 1 + 47567 28922 32012 32755 55546 55546 0.010951078775633505 PSMLPVSH 8 Unmodified _PSMLPVSH_ 0 0 0 nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT nc|ENSG00000164458|O15178-2|TBXT nc|ENSG00000164458|O15178-2|TBXT MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.4432373046875 1 867.4393 866.432024 0.84935 0.00073676 0.27868 0.00024174 1.128 0.0009785 867.4398870725926 99.383 0.17944 93.208 93.097 93.276 -6.1757 20 11 2 0 0 0 0.37649 1 66130 66130 46.921 0 1 76644000 47568 7197 32013 32756 55547 55547 -0.006535155544497684 PSMPLMSLF 9 Unmodified _PSMPLMSLF_ 0 0 0 REV__nc|ENSG00000146083|Q7L0R7-2|RNF44 REV__nc|ENSG00000146083|Q7L0R7-2|RNF44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7561645507812 2 511.756107 1021.49766 NaN NaN NaN NaN NaN NaN NaN 57.104 1 57.038 56.538 57.538 -0.066036 0 0 0 0.50124 1 31078 31078 15.847 0.078963 1 + 47569 20809 32014 32757 55548 55548 -0.012228624237650365 PSMQMPKVGF 10 Unmodified _PSMQMPKVGF_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2780151367188 2 561.277738 1120.54092 0.96912 0.00054395 0.94452 0.00053014 1.9136 0.0010741 561.2785574644287 81.175 0.67687 80.683 80.465 81.141 -0.49247 118 36 4 0 0 0 0.54684 1 44394 44394 13.906 1.3745 1 13371000 47570 9384 32015 32758 55549 55549 -0.014526726464737294 PSMVRHSLQ 9 Unmodified _PSMVRHSLQ_ 0 0 0 ENSG00000009694|ENST00000371130|TENM1;nc|ENSG00000009694|Q9UKZ4-2|TENM1 ENSG00000009694|ENST00000371130|TENM1 ENSG00000009694|ENST00000371130|TENM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.3031005859375 2 527.776751 1053.53895 0.32324 0.0001706 0.013097 6.9123E-06 0.33633 0.00017751 527.7769055549359 22.833 0.33827 20.054 19.828 20.166 -2.7784 37 25 2 0 0 0 0.15117 1 12370 12370 12.241 0 1 4533800 47571 404 32016 32759 55550 55550 0.014320346599333789 PSNAVIIVF 9 Unmodified _PSNAVIIVF_ 0 0 0 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 REV__nc|ENSG00000182077|Q3KNS1|PTCHD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.86767578125 2 480.28166 958.548768 0.61767 0.00029665 1.4632 0.00070273 2.0808 0.00099938 480.2826580703867 49.235 0.32828 48.863 48.635 48.963 -0.37172 27 15 3 0 0 0 0.21367 1 26498 26498 4.756 0 1 1561700 + 47572 29829 32017 32760 55551 55551 0.0678354593695758 PSNLIRFNENF 11 Unmodified _PSNLIRFNENF_ 0 0 0 REV__ENSG00000138115|ENST00000371270|CYP2C8 REV__ENSG00000138115|ENST00000371270|CYP2C8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.84326171875 2 675.843676 1349.6728 0.33353 0.00022542 -0.075777 -5.1214E-05 0.25776 0.0001742 675.84399714091 57.904 0.33105 57.414 57.288 57.619 -0.48974 36 15 3 0 0 0 0.65846 1 31459 31459 8.1555 1.4324 1 3661800 + 47573 20305 32018 32761 55552 55552 0.011949719664698932 PSNLIRFNENF 11 Unmodified _PSNLIRFNENF_ 0 0 0 REV__ENSG00000138115|ENST00000371270|CYP2C8 REV__ENSG00000138115|ENST00000371270|CYP2C8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8448486328125 2 675.843676 1349.6728 0.44115 0.00029815 -0.070179 -4.743E-05 0.37097 0.00025072 675.843655670938 65.269 0.46043 59.094 58.884 59.344 -6.1757 57 25 3 0 0 0 0.50515 1 42291 42291 16.149 0.90062 1 17870000 + 47574 20305 32018 32761 55553 55553 0.011949719664698932 PSNLLIFPN 9 Unmodified _PSNLLIFPN_ 0 0 0 REV__ENSG00000120832|ENST00000240050|MTERF2 REV__ENSG00000120832|ENST00000240050|MTERF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2626037597656 2 507.784567 1013.55458 0.21668 0.00011003 -4.1169 -0.0020905 -3.9002 -0.0019805 507.7816950011511 40.309 0.17859 40.309 40.192 40.37 0 12 8 2 0 0 0 0.20139 1 21605 21605 10.824 0.75 1 853930 + 47575 19264 32019 32762 55554 55554 0.04834644448601466 PSNMILVTPK 10 Unmodified _PSNMILVTPK_ 0 0 0 REV__ENST00000410111.7_1_2:86371830-86371917:-|nuORF REV__ENST00000410111.7_1_2:86371830-86371917:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2120971679688 3 367.210849 1098.61072 NaN NaN NaN NaN NaN NaN NaN 17.549 1 17.563 17.063 18.063 0.013865 0 0 0 1.0004 1 8734 8734 0.62683 0.35781 1 + 47576 26709 32020 32763 55555 55555 0.06535529293773834 PSNRDDEDA 9 Unmodified _PSNRDDEDA_ 0 0 0 ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF ENST00000591745.1_1_19:2328269-2328565:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2284851074219 2 509.707242 1017.39993 0.6049 0.00030832 -1.6378 -0.00083479 -1.0329 -0.00052647 509.7061314246135 53.402 0.46521 53.402 53.141 53.606 0 32 20 2 0 0 0 0.19891 1 29494 29494 7.2892 0 1 2326000 47577 15708 32021 32764 55556 55556 -0.10807256494570083 PSNYFHLF 8 Unmodified _PSNYFHLF_ 0 0 0 ENST00000280800.4_1_12:113827935-113828904:+|nuORF ENST00000280800.4_1_12:113827935-113828904:+|nuORF ENST00000280800.4_1_12:113827935-113828904:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.74853515625 2 512.747985 1023.48142 0.86449 0.00044327 -0.6307 -0.00032339 0.23379 0.00011988 512.7476798976345 87.355 0.45798 81.179 80.999 81.457 -6.1757 37 24 2 0 0 0 0.74163 1 57683 57683 13.508 0 1 14275000 47578 11409 32022 32765 55557 55557 -0.02938484274000075 PSPAAPEEPPA 11 Unmodified _PSPAAPEEPPA_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7587890625 2 531.758746 1061.50294 0.33673 0.00017906 0.45139 0.00024003 0.78811 0.00041909 531.7588910962032 77.545 0.50609 77.545 77.265 77.771 0 113 36 4 0 0 0 0.50515 1 43014 43014 16.149 0.90062 1 52787000 + 47579 19548 32023 32766 55558 55558 -0.02535144035960002 PSPAGGGSSPY 11 Unmodified _PSPAGGGSSPY_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13 ENSG00000065883|ENST00000181839|CDK13 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7215881347656 2 488.722164 975.429775 -0.38239 -0.00018688 0.072958 3.5656E-05 -0.30943 -0.00015123 488.72216894599245 18.384 0.19439 18.384 18.301 18.495 0 59 29 3 0 0 0 0.37677 1 9108 9108 22.736 5.794 1 1639700 47580 918 32024 32767 55559 55559 -0.05892272758569561 PSPAIYFTV 9 Unmodified _PSPAIYFTV_ 0 0 0 REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 995.5260009765625 1 994.52441 993.517133 0.22175 0.00022053 0.18912 0.00018809 0.41087 0.00040862 994.524815246514 101.08 0.12942 100.95 100.86 100.99 -0.13293 8 4 2 0 0 0 0.55775 1 55159 55159 3.9444 1.8846 1 570340 + 47581 28457 32025 32768 55560 55560 0.020115531829901556 PSPAIYFTV 9 Unmodified _PSPAIYFTV_ 0 0 0 REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF REV__ENST00000532245.5_1_11:57529333-57563148:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 994.52441 993.517133 0.22175 0.00022053 0.18912 0.00018809 0.41087 0.00040862 994.524815246514 101.08 0.12942 100.95 100.86 100.99 -0.13293 0 0 NaN 3.9444 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 570340 + 47582 28457 32025 32768 0.020115531829901556 PSPALQQQL 9 Unmodified _PSPALQQQL_ 0 0 0 ENST00000592414.1_1_19:3053819-3054095:-|nuORF ENST00000592414.1_1_19:3053819-3054095:-|nuORF ENST00000592414.1_1_19:3053819-3054095:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2726440429688 2 491.271824 980.529095 -0.20522 -0.00010082 0.46615 0.00022901 0.26093 0.00012819 491.2722118453613 23.431 0.40274 23.431 23.126 23.529 0 25 19 2 0 0 0 0.46501 1 11870 11870 9.3831 0.63772 1 598430 47583 15720 32026 32769 55561 55561 0.03805169926170038 PSPEPDFSVF 10 Unmodified _PSPEPDFSVF_ 0 0 0 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2605590820312 2 561.261122 1120.50769 0.81564 0.00045779 -2.4517 -0.001376 -1.6361 -0.00091826 561.2599701316011 72.623 0.25309 72.147 72.041 72.294 -0.47609 22 11 3 0 0 0 0.54684 1 39756 39756 13.906 2.7916 1 835770 47584 6030 32027 32770 55562 55562 -0.047742598932018154 PSPFPKLY 8 Unmodified _PSPFPKLY_ 0 0 0 ENST00000496645.5_1_1:159899888-159901393:-|nuORF ENST00000496645.5_1_1:159899888-159901393:-|nuORF ENST00000496645.5_1_1:159899888-159901393:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7636413574219 2 474.763104 947.511654 -0.10266 -4.8741E-05 1.2429 0.00059008 1.1402 0.00054134 474.76342186237554 35.422 0.51486 35.446 35.251 35.765 0.024967 52 24 3 0 0 0 0.80311 1 18773 18773 4.756 0 1 7725200 47585 14378 32028 32771 55563 55563 0.03579874391175508 PSPFVQPAL 9 Unmodified _PSPFVQPAL_ 0 0 0 REV__ENST00000599109.5_1_19:58869608-58874095:-|nuORF REV__ENST00000599109.5_1_19:58869608-58874095:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2651977539062 2 478.26601 954.517468 NaN NaN NaN NaN NaN NaN NaN 67.814 1 67.814 67.314 68.314 0 0 0 0 0.82396 1 37813 37813 4.756 0.42677 1 + 47586 29237 32029 32772 55564 55564 0.0383897290286086 PSPGALDVTIM 11 Unmodified _PSPGALDVTIM_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.265869140625 2 550.78645 1099.55835 0.5891 0.00032447 -1.2112 -0.00066713 -0.62213 -0.00034266 550.7854744965227 39.114 0.42974 39.114 38.97 39.4 0 45 20 4 0 0 0 0.29134 1 20903 20903 12.241 3.6474 1 28666000 47587 9379 32030 32773 55565 55565 0.012549461601565781 PSPGLGRVPS 10 Unmodified _PSPGLGRVPS_ 0 0 0 REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7726135253906 2 483.771991 965.529429 0.5118 0.0002476 0.59357 0.00028715 1.1054 0.00053475 483.77214551622814 30.906 0.1741 30.803 30.717 30.891 -0.10269 9 6 2 0 0 0 0.68209 1 16059 16059 4.897 3.0528 1 1288100 + 47588 27878 32031 32774 55566 55566 0.04528589646054115 PSPHPVRY 8 Unmodified _PSPHPVRY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7539978027344 2 476.753601 951.49265 NaN NaN NaN NaN NaN NaN NaN 28.97 1 28.908 28.408 29.408 -0.062159 0 0 0 0.60022 1 14970 14970 34.102 12.356 1 47589 5105 32032 32775 55567 55567 0.014963378201287014 PSPHPVRY 8 Unmodified _PSPHPVRY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7539978027344 2 476.753601 951.49265 0.70909 0.00033806 -0.71117 -0.00033905 -0.0020808 -9.9202E-07 476.7533931590582 32.735 0.37636 28.879 28.652 29.028 -3.8562 32 19 2 0 0 0 0.17994 1 18677 18677 77.984 24.409 1 9991000 47590 5105 32032 32775 55568 55568 0.014963378201287014 PSPLLTFASQ 10 Unmodified _PSPLLTFASQ_ 0 0 0 ENST00000379328.7_1_10:8097346-8097625:+|nuORF ENST00000379328.7_1_10:8097346-8097625:+|nuORF ENST00000379328.7_1_10:8097346-8097625:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7868041992188 2 530.787307 1059.56006 0.46786 0.00024833 -0.59849 -0.00031767 -0.13063 -6.9337E-05 530.7872524709734 59.232 0.43562 59.232 58.965 59.4 0 50 18 3 0 0 0 0.62665 1 33023 33023 15.248 2.206 1 6323800 47591 12563 32033 32776 55569 55569 0.03266323240427482 PSPLPRLR 8 Unmodified _PSPLPRLR_ 0 0 0 REV__ENSG00000138622|ENST00000261917|HCN4 REV__ENSG00000138622|ENST00000261917|HCN4 MSMS AL20221201_MKP_PDAC_01 4 468.2931518554688 2 468.292894 934.571235 NaN NaN NaN NaN NaN NaN NaN 43.837 1 39.072 38.572 39.572 -4.7648 0 0 0 0.32286 1 26678 26678 61.357 0 1 + 47592 20347 32034 32777 55570 55570 0.10133190125213787 PSPPGAHH 8 Unmodified _PSPPGAHH_ 0 0 0 ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF ENST00000358912.4_1_2:64335433-64371452:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.1969299316406 2 400.195919 798.377286 NaN NaN NaN NaN NaN NaN NaN 17.954 1 15.368 14.868 15.868 -2.5866 0 0 0 0.97444 1 9430 9430 5.2307 0 1 47593 12135 32035 32778 55571 55571 -0.029967663108664055 PSPPRGRRLF 10 Unmodified _PSPPRGRRLF_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8999328613281 3 394.899996 1181.67816 0.64308 0.00025395 -0.56561 -0.00022336 0.077468 3.0592E-05 394.89988469930705 17.482 0.26929 14.895 14.775 15.044 -2.5866 131 53 3 0 0 0 0.51153 1 9217 9217 15.739 1.5205 1 16515000 47594 8104 32036 32779 55572 55572 0.09458740339596261 PSPQIIGTQN 10 Unmodified _PSPQIIGTQN_ 0 0 0 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 REV__nc|ENSG00000184788|Q86VE3-2|SATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5218200683594 3 352.189101 1053.54547 -0.41855 -0.00014741 2.4964 0.00087922 2.0779 0.00073181 352.18974257103207 20.271 0.2507 20.271 20.106 20.357 0 40 16 3 0 0 0 0.67046 1 10138 10138 6.1918 1.2948 1 3075900 + 47595 23443 32037 32780 55573 55573 0.020842510923102964 PSPQNTCAPL 10 Unmodified _PSPQNTCAPL_ 0 0 0 ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2477416992188 2 514.247492 1026.48043 NaN NaN NaN NaN NaN NaN NaN 26.565 1 26.533 26.033 27.033 -0.031708 0 0 0 0.76313 1 13662 13662 13.906 0.86358 1 47596 9834 32038 32781 55574 55574 -0.03175066705216523 PSPRPCEPHF 10 Unmodified _PSPRPCEPHF_ 0 0 0 ENST00000498353.5_1_20:32247812-32250053:-|nuORF ENST00000498353.5_1_20:32247812-32250053:-|nuORF ENST00000498353.5_1_20:32247812-32250053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5178833007812 3 389.518564 1165.53386 -0.62493 -0.00024342 -1.1995 -0.00046723 -1.8244 -0.00071065 389.51787871041796 26.889 0.21004 26.889 26.782 26.992 0 16 9 3 0 0 0 0.6606 1 13846 13846 6.6304 2.754 1 856020 47597 14421 32039 32782 55575 55575 -0.04228269202712909 PSPTHPPVVI 10 Unmodified _PSPTHPPVVI_ 0 0 0 ENSG00000058673|ENST00000367210|ZC3H11A ENSG00000058673|ENST00000367210|ZC3H11A ENSG00000058673|ENST00000367210|ZC3H11A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.296630859375 2 522.297842 1042.58113 NaN NaN NaN NaN NaN NaN NaN 48.698 1 48.698 48.198 49.198 0 0 0 0 0.61917 1 26742 26742 20.454 2.3073 1 47598 806 32040 32783 55576 55576 0.06154333339964069 PSPTHWIGP 9 Unmodified _PSPTHWIGP_ 0 0 0 REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF REV__ENST00000301634.11_1_17:76170450-76170858:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.2544860839844 2 496.253434 990.492316 NaN NaN NaN NaN NaN NaN NaN 32.876 1 29.019 28.519 29.519 -3.8562 0 0 0 0.6032 1 18793 18793 12.532 0 1 + 47599 25322 32041 32784 55577 55577 -0.003310818997078968 PSPVPGPL 8 Unmodified _PSPVPGPL_ 0 0 0 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 ENSG00000173404|ENST00000310227|INSM1 MSMS AL20221201_MKP_PDAC_01 4 381.8724975585938 2 382.221072 762.42759 NaN NaN NaN NaN NaN NaN NaN 24.447 1 21.62 21.12 22.12 -2.8273 0 0 0 0.97444 1 13312 13312 5.2307 2.3415 1 47600 8320 32042 32785 55578 55578 0.03687343294279799 PSPVSAGPA 9 Unmodified _PSPVSAGPA_ 0 0 0 REV__ENST00000493082.5_1_5:850626-880074:-|nuORF REV__ENST00000493082.5_1_5:850626-880074:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.7239074707031 2 391.705786 781.397018 -0.22653 -8.8735E-05 2.4602 0.00096369 2.2337 0.00087496 391.7068792554255 52.232 0.2295 52.232 52.103 52.332 0 15 9 2 0 0 0 0.1474 1 28893 28893 15.847 0 1 987550 + 47601 27915 32043 32786 55579 55579 -0.0024243509076313785 PSPWLPLLI 9 Unmodified _PSPWLPLLI_ 0 0 0 ENSG00000107159|ENST00000378357|CA9 ENSG00000107159|ENST00000378357|CA9 ENSG00000107159|ENST00000378357|CA9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2935180664062 2 518.315503 1034.61645 NaN NaN NaN NaN NaN NaN NaN 89.057 1 88.553 88.053 89.053 -0.50423 0 0 0 0.85798 1 48697 48697 0.52476 0 1 47602 2477 32044 32787 55580 55580 0.10052995867749814 PSQEGRHDTF 10 Unmodified _PSQEGRHDTF_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2698364257812 2 587.267801 1172.52105 NaN NaN NaN NaN NaN NaN NaN 59.2 1 58.71 58.21 59.21 -0.49079 0 0 0 0.97855 1 32204 32204 2.9952 0.41776 1 + 47603 22659 32045 32788 55581 55581 -0.05831009061239456 PSQELPEIMA 10 Unmodified _PSQELPEIMA_ 0 0 0 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7743530273438 2 557.776082 1113.53761 1.2375 0.00069027 0.70073 0.00039085 1.9383 0.0010811 557.775528386796 50.255 0.9464 44.716 44.251 45.198 -5.5391 135 60 4 0 0 0 0.20962 1 31483 31483 32.786 0 1 165620000 47604 10511 32046 32789 55582 55582 -0.014616442195119816 PSQFLGHKI 9 Unmodified _PSQFLGHKI_ 0 0 0 REV__ENST00000510994.5_1_3:134197348-134197435:-|nuORF REV__ENST00000510994.5_1_3:134197348-134197435:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2219848632812 2 513.790184 1025.56581 0.16373 8.4125E-05 1.4195 0.00072932 1.5832 0.00081345 513.7910282849813 40.054 0.13757 40.054 39.952 40.089 0 11 6 2 0 0 0 0.19205 1 21479 21479 6.2058 0.97511 1 1539200 + 47605 28151 32047 32790 55583 55583 0.0540546654276568 PSQFLGHKI 9 Unmodified _PSQFLGHKI_ 0 0 0 REV__ENST00000510994.5_1_3:134197348-134197435:-|nuORF REV__ENST00000510994.5_1_3:134197348-134197435:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.790184 1025.56581 0.60429 0.00031048 0.71525 0.00036749 1.3195 0.00067796 513.790508705005 40.112 0.20782 40.117 40.004 40.212 0.0050545 0.031732 -6.0667E-05 NaN 6.2058 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 8566200 + 47606 28151 32047 32790 0.0540546654276568 PSQIMFETF 9 Unmodified _PSQIMFETF_ 0 0 0 ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000574671.5_1_17:79477718-79478688:-|nuORF ENST00000574671.5_1_17:79477718-79478688:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.1744995117188 3 367.175804 1098.50558 NaN NaN NaN NaN NaN NaN NaN 67.314 1 61.138 60.638 61.638 -6.1757 0 0 0 0.83049 1 43840 43840 2.2828 0.5405 1 47607 15509 32048 32791 55584 55584 -0.0397301190264443 PSQLDHTSK 9 Unmodified _PSQLDHTSK_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7562255859375 2 506.756538 1011.49852 -0.16594 -8.4092E-05 0.91252 0.00046243 0.74658 0.00037834 506.7565637834797 18.658 0.2874 18.658 18.463 18.75 0 69 29 3 0 0 0 0.07916 1 9205 9205 37.974 3.5723 1 2574900 + 47608 20378 32049 32792 55585 55585 -0.006766084588434751 PSQLFDPNF 9 Unmodified _PSQLFDPNF_ 0 0 0 nc|ENSG00000256463|Q9BXA9-4|SALL3;ENSG00000256463|ENST00000537592|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 nc|ENSG00000256463|Q9BXA9-4|SALL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.288818359375 2 532.756007 1063.49746 0.49202 0.00026213 1.396 0.0007437 1.888 0.0010058 532.7571529526102 71.879 0.25913 71.403 71.266 71.525 -0.47609 17 9 2 0 0 0 0.16895 1 39344 39344 13.042 3.6593 1 1026600 47609 10800 32050 32793 55586 55586 -0.03174822827782009 PSQLPPLRR 9 Unmodified _PSQLPPLRR_ 0 0 0 REV__ENST00000464324.5_1_11:64496468-64497660:-|nuORF REV__ENST00000464324.5_1_11:64496468-64497660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.288818359375 2 532.322183 1062.62981 0.51008 0.00027153 2.4081 0.0012819 2.9182 0.0015534 532.3233108267682 72.051 0.31545 71.575 71.415 71.73 -0.4761 27 12 3 0 0 0 0.19205 1 39344 39344 6.2058 4.5532 1 2632300 + 47610 27371 32051 32794 55587 55587 0.101002466996988 PSQLRTHVS 9 Unmodified _PSQLRTHVS_ 0 0 0 ENST00000462130.1_1_2:242208797-242208971:-|nuORF ENST00000462130.1_1_2:242208797-242208971:-|nuORF ENST00000462130.1_1_2:242208797-242208971:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7804565429688 2 512.780348 1023.54614 0.13833 7.0931E-05 -0.030162 -1.5466E-05 0.10816 5.5464E-05 512.780168300229 24.369 0.36744 21.541 21.356 21.724 -2.8273 42 20 3 0 0 0 0.06294 1 13340 13340 41.84 3.8656 1 10859000 47611 13671 32052 32795 55588 55588 0.035310905319988706 PSQLYSLRQH 10 Unmodified _PSQLYSLRQH_ 0 0 0 REV__ENST00000592915.1_1_17:42084599-42085966:+|nuORF REV__ENST00000592915.1_1_17:42084599-42085966:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.2198486328125 3 410.219283 1227.63602 NaN NaN NaN NaN NaN NaN NaN 24.133 1 21.306 20.806 21.806 -2.8273 0 0 0 0.78298 1 13114 13114 7.9454 0 1 + 47612 29186 32053 32796 55589 55589 0.031307201405752494 PSQMQPFLSY 10 Unmodified _PSQMQPFLSY_ 0 0 0 REV__nc|ENSG00000111728|Q92185-2|ST8SIA1 REV__nc|ENSG00000111728|Q92185-2|ST8SIA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7528686523438 2 599.284074 1196.5536 0.2662 0.00015953 -1.648 -0.00098765 -1.3818 -0.00082812 599.283276449513 36.886 0.38487 36.886 36.732 37.117 0 29 18 2 0 0 0 0.23227 1 19506 19506 6.7232 3.7279 1 1749800 + 47613 29572 32054 32797 55590 55590 -0.036819379825828946 PSQPCDFHY 9 Unmodified _PSQPCDFHY_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7286987304688 2 547.224017 1092.43348 -0.9199 -0.00050339 0.70597 0.00038632 -0.21393 -0.00011707 547.2244912909202 77.939 0.63417 77.456 77.189 77.824 -0.4826 239 41 7 0 0 0 0.5029 1 42645 42645 7.2892 2.96 1 193910000 47614 3344 32055 32798 55591 55591 -0.1090392625635559 PSQPIQLPSL 10 Unmodified _PSQPIQLPSL_ 0 0 0 REV__ENSG00000155495|ENST00000285879|MAGEC1 REV__ENSG00000155495|ENST00000285879|MAGEC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2872924804688 2 540.308406 1078.60226 0.20225 0.00010928 0.43003 0.00023235 0.63229 0.00034163 540.3090650152423 57.112 0.23061 56.627 56.503 56.734 -0.48554 16 10 2 0 0 0 0.23806 1 30988 30988 6.2058 0 1 1835300 + 47615 21272 32056 32799 55592 55592 0.0661029864882039 PSQQRERRE 9 Unmodified _PSQQRERRE_ 0 0 0 REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF REV__ENST00000429480.2_1_1:6298805-6299333:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5389709472656 3 395.874287 1184.60103 NaN NaN NaN NaN NaN NaN NaN 18.659 1 18.683 18.183 19.183 0.023106 0 0 0 0.85737 1 9372 9372 0.26902 0 1 + 47616 26950 32057 32800 55593 55593 0.01611477332630784 PSQQRSPLL 9 Unmodified _PSQQRSPLL_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2;nc|ENSG00000171435|Q6VAB6-2|KSR2;ENST00000545002.1_1_12:117955650-118115004:-|nuORF ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.29296875 2 513.290548 1024.56654 3.944 0.0020244 0.66326 0.00034045 4.6072 0.0023649 513.2908874735177 98.315 0.28956 98.287 98.142 98.432 -0.028282 16 10 2 0 0 0 0.39863 1 54603 54603 12.532 2.4576 1 1246500 47617 8097 32058 32801 55594 55594 0.05524261191817459 PSQRARSFP 9 Unmodified _PSQRARSFP_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2802124023438 2 523.280515 1044.54648 -0.35088 -0.00018361 0.78557 0.00041108 0.43469 0.00022747 523.280841172933 33.583 0.39865 33.424 33.223 33.622 -0.15918 46 16 4 0 0 0 0.044011 1 17577 17577 47.749 9.7747 1 9508900 47618 8204 32059 32802 55595 55595 0.02598510251868902 PSQRARSFP 9 Unmodified _PSQRARSFP_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.280515 1044.54648 -0.042127 -2.2044E-05 1.1119 0.00058185 1.0698 0.0005598 523.7822934373488 33.321 0.11215 33.35 33.274 33.386 0.028934 -0.11685 0.00020619 NaN 47.749 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 490990 47619 8204 32059 32802 0.02598510251868902 PSQRARSFP 9 Unmodified _PSQRARSFP_ 0 0 0 nc|ENSG00000172349|Q14005-4|IL16;nc|ENSG00000172349|Q14005-3|IL16;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16 nc|ENSG00000172349|Q14005-4|IL16 nc|ENSG00000172349|Q14005-4|IL16 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 523.280515 1044.54648 1.17 0.00061224 1.113 0.00058241 2.283 0.0011947 523.2817912730741 37.995 0.35134 33.626 33.334 33.686 -4.3689 0.1594 0.00020733 NaN 47.749 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 14271000 47620 8204 32059 32802 0.02598510251868902 PSQTPLLGF 9 Unmodified _PSQTPLLGF_ 0 0 0 ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576225.5_1_17:79058928-79084738:+|nuORF ENST00000576225.5_1_17:79058928-79084738:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2643127441406 2 480.263468 958.512382 0.97952 0.00047043 -0.64934 -0.00031185 0.33019 0.00015858 480.26329927109435 80.646 0.45357 80.153 79.88 80.334 -0.49247 29 18 2 0 0 0 0.32871 1 44150 44150 15.847 3.3156 1 878190 47621 15522 32060 32803 55596 55596 0.03146669040256711 PSQYYADQF 9 Unmodified _PSQYYADQF_ 0 0 0 REV__nc|ENSG00000292339|O95671-3|ASMTL REV__nc|ENSG00000292339|O95671-3|ASMTL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2710571289062 2 559.743096 1117.47164 0.17219 9.6381E-05 -1.764 -0.0009874 -1.5918 -0.00089102 559.7418611251874 69.972 0.11368 69.493 69.401 69.515 -0.47903 5 4 2 0 0 0 0.20139 1 38249 38249 10.824 0 1 884900 + 47622 22375 32061 32804 55597 55597 -0.08239717070068764 PSRASFHEL 9 Unmodified _PSRASFHEL_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6;ENST00000526148.5_2_11:10829222-10829513:-|nuORF nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7708740234375 2 522.267073 1042.51959 -0.45757 -0.00023897 2.999 0.0015663 2.5415 0.0013273 522.2681211262321 35.258 0.32792 35.036 34.873 35.201 -0.2224 27 14 3 0 0 0 0.017075 1 18453 18453 66.457 32.055 1 2383400 47623 9845 32062 32805 55598 55598 3.401640651645721E-05 PSREAPLPFI 10 Unmodified _PSREAPLPFI_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1822814941406 3 376.213358 1125.61824 NaN NaN NaN NaN NaN NaN NaN 21.48 1 21.509 21.009 22.009 0.028357 0 0 0 0.98692 1 10901 10901 2.086 1.5801 1 47624 2669 32063 32806 55599 55599 0.060460048857066795 PSREFWHRLRV 11 Unmodified _PSREFWHRLRV_ 0 0 0 ENST00000476826.5_1_6:160210904-160219152:+|nuORF;ENSG00000112110|ENST00000367034|MRPL18 ENST00000476826.5_1_6:160210904-160219152:+|nuORF ENST00000476826.5_1_6:160210904-160219152:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.9422302246094 3 494.940743 1481.8004 NaN NaN NaN NaN NaN NaN NaN 22.474 1 22.491 21.991 22.991 0.01749 0 0 0 0.94011 1 11543 11543 2.4348 0.18206 1 47625 2858 32064 32807 55600 55600 0.0787715735114034 PSREFWHRLRV 11 Unmodified _PSREFWHRLRV_ 0 0 0 ENST00000476826.5_1_6:160210904-160219152:+|nuORF;ENSG00000112110|ENST00000367034|MRPL18 ENST00000476826.5_1_6:160210904-160219152:+|nuORF ENST00000476826.5_1_6:160210904-160219152:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.9413757324219 3 494.940743 1481.8004 NaN NaN NaN NaN NaN NaN NaN 22.659 1 22.677 22.177 23.177 0.01749 0 0 0 0.94299 1 11644 11644 0.36667 0.27183 1 47626 2858 32064 32807 55601 55601 0.0787715735114034 PSREPPQL 8 Unmodified _PSREPPQL_ 0 0 0 REV__ENSG00000134207|ENST00000610222|SYT6 REV__ENSG00000134207|ENST00000610222|SYT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2506103515625 2 462.250892 922.48723 0.17424 8.0541E-05 -0.073752 -3.4092E-05 0.10048 4.6449E-05 462.2507845879758 29.212 0.26531 29.212 29.063 29.328 0 25 12 3 0 0 0 0.67686 1 15098 15098 19.257 1.1106 1 3668200 + 47627 19961 32065 32808 55602 55602 0.022886142376592034 PSREPPQL 8 Unmodified _PSREPPQL_ 0 0 0 REV__ENSG00000134207|ENST00000610222|SYT6 REV__ENSG00000134207|ENST00000610222|SYT6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 462.250892 922.48723 0.17424 8.0541E-05 -0.073752 -3.4092E-05 0.10048 4.6449E-05 462.2507845879758 29.212 0.26531 29.212 29.063 29.328 0 0 0 NaN 19.257 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3668200 + 47628 19961 32065 32808 0.022886142376592034 PSRERPKA 8 Unmodified _PSRERPKA_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MSMS AL20221201_MKP_PDAC_01 4 470.7701416015625 2 470.769783 939.525013 NaN NaN NaN NaN NaN NaN NaN 18.898 1 16.276 15.776 16.776 -2.6215 0 0 0 0.95973 1 9980 9980 8.5933 2.2392 1 47629 5491 32066 32809 55603 55603 0.052831252231385406 PSRGILKY 8 Unmodified _PSRGILKY_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.27978515625 2 467.279452 932.544351 0.75763 0.00035402 -0.49378 -0.00023073 0.26385 0.00012329 467.27933688198834 41.152 0.34728 36.544 36.339 36.686 -4.6079 32 21 2 0 0 0 0.26367 1 24596 24596 60.074 18.234 1 10380000 47630 5706 32067 32810 55604 55604 0.07538081514042005 PSRIQPAVF 9 Unmodified _PSRIQPAVF_ 0 0 0 nc|ENSG00000166448|Q8N3G9-3|TMEM130;ENSG00000166448|ENST00000339375|TMEM130;nc|ENSG00000166448|Q8N3G9|TMEM130 nc|ENSG00000166448|Q8N3G9-3|TMEM130 nc|ENSG00000166448|Q8N3G9-3|TMEM130 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.731201171875 2 507.790184 1013.56581 0.59089 0.00030005 -1.6527 -0.00083921 -1.0618 -0.00053916 507.7892399289608 43.318 0.33615 38.553 38.419 38.755 -4.7648 37 23 2 0 0 0 0.209 1 26216 26216 3.9444 0.3479 1 27724000 47631 7489 32068 32811 55605 55605 0.05957466542747625 PSRKLVAL 8 Unmodified _PSRKLVAL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2893676757812 2 442.28982 882.565087 0.52215 0.00023094 -0.10391 -4.5957E-05 0.41824 0.00018498 442.28966262458806 38.994 0.29542 39.005 38.9 39.196 0.011456 31 13 3 0 0 0 0.22971 1 20751 20751 65.235 15.566 1 5306000 47632 4089 32069 32812 55606 55606 0.11910671893701874 PSRKLVAL 8 Unmodified _PSRKLVAL_ 0 0 0 ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 ENSG00000128789|ENST00000317615|PSMG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2907409667969 2 442.28982 882.565087 0.77661 0.00034349 0.77141 0.00034119 1.548 0.00068467 442.2901837164471 43.779 0.39903 39.014 38.772 39.171 -4.7648 59 24 3 0 0 0 0.22971 2 26658 26521;26658 65.235 24.786 1 22674000 47633 4089 32069 32812 55607;55608 55608 0.11910671893701874 PSRLRQFGF 9 Unmodified _PSRLRQFGF_ 0 0 0 REV__ENSG00000134109|ENST00000256497|EDEM1 REV__ENSG00000134109|ENST00000256497|EDEM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7702026367188 2 554.306532 1106.59851 0.30423 0.00016864 -1.3963 -0.000774 -1.0921 -0.00060536 554.305536429139 55.083 0.27449 55.083 54.944 55.218 0 30 11 3 0 0 0 0.20528 1 30548 30548 8.5933 1.304 1 3267100 + 47634 19952 32070 32813 55609 55609 0.04947673665606089 PSRPGPNLFR 10 Unmodified _PSRPGPNLFR_ 0 0 0 REV__ENST00000250457.7_1_14:34420017-34420161:-|nuORF REV__ENST00000250457.7_1_14:34420017-34420161:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8805236816406 3 380.880602 1139.61998 -0.013594 -5.1778E-06 0.060963 2.322E-05 0.047369 1.8042E-05 380.8805361519466 35.056 0.14593 35.083 35.018 35.164 0.027405 11 6 2 0 0 0 0.38092 1 18534 18534 14.957 10.841 1 1164200 + 47635 24879 32071 32814 55610 55610 0.05575058694330437 PSRRLTLTY 9 Unmodified _PSRRLTLTY_ 0 0 0 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 MSMS AL20221201_MKP_PDAC_01 4 369.8310546875 3 369.548741 1105.62439 NaN NaN NaN NaN NaN NaN NaN 43.359 1 38.594 38.094 39.094 -4.7648 0 0 0 0.82739 1 26328 26328 2.4985 0.71606 1 + 47636 23818 32072 32815 55611 55611 0.07580523117235316 PSRSRYIF 8 Unmodified _PSRSRYIF_ 0 0 0 REV__ENSG00000183579|ENST00000544604|ZNRF3 REV__ENSG00000183579|ENST00000544604|ZNRF3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.3036499023438 2 513.279983 1024.54541 0.57531 0.0002953 1.1769 0.00060407 1.7522 0.00089937 513.2803740486366 67.558 0.12979 61.382 61.272 61.402 -6.1757 9 7 2 0 0 0 8.7369 1 44028 44028 5.7604 0 1 4451500 + 47637 23357 32073 32816 55612 55612 0.03412295882935723 PSRTPPSKRLF 11 Unmodified _PSRTPPSKRLF_ 0 0 0 ENST00000360547.9_1_15:81601214-81601322:+|nuORF ENST00000360547.9_1_15:81601214-81601322:+|nuORF ENST00000360547.9_1_15:81601214-81601322:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2511596679688 3 429.250695 1284.73025 0.90829 0.00038989 -0.46973 -0.00020163 0.43856 0.00018825 429.2504256496987 75.454 1.8608 69.279 68.759 70.62 -6.1757 201 101 3 0 0 0 0.53952 2 49217 49217;49339 11.631 3.7853 1 23716000 47638 12168 32074 32817 55613;55614 55613 0.09927858962691971 PSRVMGPRPYP 11 Unmodified _PSRVMGPRPYP_ 0 0 0 REV__ENST00000434030.1_1_3:50311077-50311539:+|nuORF REV__ENST00000434030.1_1_3:50311077-50311539:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7141723632812 3 419.55713 1255.64956 0.44155 0.00018525 -1.9675 -0.00082549 -1.526 -0.00064023 419.55611515462783 58.8 0.29362 58.74 58.607 58.901 -0.060719 25 14 2 0 0 0 0.29699 1 32045 32045 7.846 2.0626 1 1154500 + 47639 26814 32075 32818 55615 55615 0.031962546481736354 PSRWPAMKFRR 11 Unmodified _PSRWPAMKFRR_ 0 0 0 nc|ENSG00000120594|Q6UX71-3|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;ENSG00000120594|ENST00000377252|PLXDC2 nc|ENSG00000120594|Q6UX71-3|PLXDC2 nc|ENSG00000120594|Q6UX71-3|PLXDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2680358886719 3 477.931191 1430.77174 1.1716 0.00055992 -0.5556 -0.00026554 0.61596 0.00029439 478.26644457490875 50.183 0.70501 44.644 44.266 44.971 -5.5391 116 45 4 0 0 0 0.68427 1 31390 31390 4.7159 0.59929 1 137070000 47640 3523 32076 32819 55616 55616 0.0735871645035786 PSSADSTLSMP 11 Unmodified _PSSADSTLSMP_ 0 0 0 REV__nc|ENSG00000095787|Q9BTA9-5|WAC REV__nc|ENSG00000095787|Q9BTA9-5|WAC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8029174804688 2 546.747521 1091.48049 0.55359 0.00030268 1.7754 0.00097072 2.329 0.0012734 546.74833415084 73.488 0.2245 73.012 72.894 73.118 -0.47588 17 9 3 0 0 0 0.28953 1 40230 40230 8.7454 1.4562 1 563570 + 47641 17950 32077 32820 55617 55617 -0.06159111495867364 PSSDLPLA 8 Unmodified _PSSDLPLA_ 0 0 0 REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5 REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2151794433594 2 400.213443 798.412334 NaN NaN NaN NaN NaN NaN NaN 71.188 1 71.188 70.688 71.688 0 0 0 0 0.93587 1 39655 39655 13.508 0.97634 1 + 47642 18634 32078 32821 55618 55618 0.005064317064238821 PSSEIVKEPIT 11 Unmodified _PSSEIVKEPIT_ 0 0 0 REV__ENST00000368281.1_1_6:127765256-127771512:-|nuORF REV__ENST00000368281.1_1_6:127765256-127771512:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5553588867188 3 400.555449 1198.64452 -0.11221 -4.4948E-05 1.4573 0.00058372 1.3451 0.00053877 400.55599526835624 29.161 0.26911 29.191 29.03 29.299 0.030104 25 10 3 0 0 0 0.631 1 15200 15200 9.7643 3.1339 1 4433400 + 47643 23780 32079 32822 55619 55619 0.05314229266514303 PSSEPSLNL 9 Unmodified _PSSEPSLNL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7061767578125 2 472.24019 942.465826 0.54776 0.00025868 -1.2762 -0.00060265 -0.72839 -0.00034398 472.2394834292658 53.159 0.26207 53.159 52.982 53.244 0 16 11 2 0 0 0 0.19891 1 29426 29426 11.64 3.047 1 941750 47644 4852 32080 32823 55620 55620 -0.007708155817113038 PSSFEHLQRHD 11 Unmodified _PSSFEHLQRHD_ 0 0 0 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2205200195312 3 451.54958 1351.62691 -0.43835 -0.00019794 0.52162 0.00023554 0.083275 3.7603E-05 451.88408136637184 28.336 0.29395 28.336 28.074 28.368 0 29 14 4 0 0 0 0.71728 1 14488 14488 2.6312 0 1 2572500 + 47645 17534 32081 32824 55621 55621 -0.03483673215782801 PSSFHRCSVY 10 Unmodified _PSSFHRCSVY_ 0 0 0 nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB;nc|ENSG00000163576|Q8N7U6-2|EFHB;ENST00000498089.1_1_3:19936277-19975510:-|nuORF nc|ENSG00000163576|Q8N7U6-3|EFHB nc|ENSG00000163576|Q8N7U6-3|EFHB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7714233398438 2 591.771665 1181.52878 NaN NaN NaN NaN NaN NaN NaN 33.475 1 33.475 32.975 33.975 0 0 0 0 0.095408 1 17561 17561 51.63 15.503 1 47646 7021 32082 32825 55622 55622 -0.0547257306532174 PSSFNKCHC 9 Unmodified _PSSFNKCHC_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7131042480469 2 511.712762 1021.41097 0.12986 6.645E-05 -1.6026 -0.00082006 -1.4727 -0.00075361 511.7119969544435 63.461 0.35594 62.974 62.793 63.149 -0.48617 35 15 3 0 0 0 0.32871 1 34677 34677 15.847 1.0089 1 6005700 47647 6155;16276 32083 32826 55623 55623 -0.0988784892563217 PSSHPPPS 8 Unmodified _PSSHPPPS_ 0 0 0 ENST00000430710.7_1_14:21897217-21897280:-|nuORF ENST00000430710.7_1_14:21897217-21897280:-|nuORF ENST00000430710.7_1_14:21897217-21897280:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.1952209472656 2 403.195585 804.376617 0.064843 2.6144E-05 -0.66589 -0.00026848 -0.60105 -0.00024234 403.19506891680714 39.497 0.25677 39.497 39.424 39.681 0 13 11 2 0 0 0 0.40035 1 21221 21221 44.407 0 1 1803700 47648 13249 32084 32827 55624 55624 -0.03339605750568353 PSSIADRFYL 10 Unmodified _PSSIADRFYL_ 0 0 0 ENST00000474323.5_1_22:44371844-44392260:+|nuORF;ENSG00000100347|ENST00000350028|SAMM50 ENST00000474323.5_1_22:44371844-44392260:+|nuORF ENST00000474323.5_1_22:44371844-44392260:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.8020629882812 2 584.803488 1167.59242 0.57177 0.00033438 -1.6311 -0.00095388 -1.0593 -0.0006195 584.8021050500317 47.832 0.47367 47.832 47.558 48.032 0 59 22 4 0 0 0 0.22237 1 26119 26119 30.637 0 1 6580000 47649 1802 32085 32828 55625 55625 0.015331106434359754 PSSIRTKAL 9 Unmodified _PSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.7955627441406 2 486.795466 971.57638 0.0098549 4.7973E-06 0.092029 4.48E-05 0.10188 4.9597E-05 486.7952358163694 31.284 0.19188 31.315 31.199 31.391 0.030106 11 7 2 0 0 0 0.062454 1 16403 16403 41.956 14.327 1 1243400 47650 1774 32086 32829 55626 55626 0.08945449197187827 PSSIRTKAL 9 Unmodified _PSSIRTKAL_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7962951660156 2 486.795466 971.57638 0.67338 0.0003278 -0.19002 -9.2503E-05 0.48336 0.0002353 486.7953874688914 35.497 0.29551 31.304 31.161 31.457 -4.1928 26 18 2 0 0 0 0.0082981 1 20601 20601 96.936 49.187 1 7942200 47651 1774 32086 32829 55627 55627 0.08945449197187827 PSSKSSSGLP 10 Unmodified _PSSKSSSGLP_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.4818725585938 1 946.484002 945.476725 0.11444 0.00010832 -4.1447 -0.0039229 -4.0303 -0.0038146 946.4829127811831 68.164 0.10576 61.989 61.94 62.046 -6.1757 6 5 2 0 0 0 0.29752 1 44508 44508 27.629 3.6082 1 9182000 + 47652 20948 32087 32830 55628 55628 0.0018058679257819676 PSSPRPSPL 9 Unmodified _PSSPRPSPL_ 0 0 0 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30;nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30 nc|ENSG00000186517|Q7Z6I6-2|ARHGAP30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2581787109375 2 469.258717 936.50288 0.80868 0.00037948 -2.2251 -0.0010441 -1.4164 -0.00066466 469.2579495540335 35.575 0.25496 31.383 31.286 31.541 -4.1928 23 15 2 0 0 0 0.10734 1 20720 20720 32.305 0 1 5666000 47653 9482 32088 32831 55629 55629 0.0320890075471425 PSSPRYWLWY 10 Unmodified _PSSPRYWLWY_ 0 0 0 nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF;nc|ENSG00000177595|Q9HB75-5|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF nc|ENSG00000177595|Q9HB75-6|PIDD1 nc|ENSG00000177595|Q9HB75-6|PIDD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2206420898438 3 452.224146 1353.65061 0.55418 0.00025062 -0.56796 -0.00025685 -0.013781 -6.2319E-06 452.22388183486953 38.775 0.59055 34.324 34.068 34.659 -4.4509 108 37 5 0 0 0 0.69064 1 23077 23077 1.9064 0.1641 1 236530000 47654 14833 32089 32832 55630 55630 -0.012072077112861734 PSSPWLDWS 9 Unmodified _PSSPWLDWS_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7991943359375 2 537.748182 1073.48181 0.08714 4.6859E-05 0.056345 3.03E-05 0.14349 7.7159E-05 537.7484940434458 54.263 0.13475 53.797 53.687 53.822 -0.46664 9 6 2 0 0 0 0.19891 1 29381 29381 11.64 2.2572 1 1247000 47655 1186 32090 32833 55631 55631 -0.05199109344812314 PSSQSKDPRDE 11 Unmodified _PSSQSKDPRDE_ 0 0 0 nc|ENSG00000140534|Q7Z2Z1-2|TICRR;ENSG00000140534|ENST00000268138|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR nc|ENSG00000140534|Q7Z2Z1-2|TICRR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8625793457031 3 415.861713 1244.56331 NaN NaN NaN NaN NaN NaN NaN 16.453 1 16.453 15.953 16.953 0 0 0 0 0.94011 1 8023 8023 2.4348 0.34878 1 47656 5249 32091 32834 55632 55632 -0.04919078443526814 PSSRNRQEL 9 Unmodified _PSSRNRQEL_ 0 0 0 REV__ENSG00000164841|ENST00000297459|TMEM74 REV__ENSG00000164841|ENST00000297459|TMEM74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7853393554688 2 543.786161 1085.55777 -0.41113 -0.00022357 1.7197 0.00093514 1.3086 0.00071157 543.7866829196988 26.584 0.25064 26.584 26.428 26.679 0 14 8 2 0 0 0 0.45045 1 13658 13658 10.074 0.6908 1 1040800 + 47657 21956 32092 32835 55633 55633 0.018412875553167396 PSSRRLGL 8 Unmodified _PSSRRLGL_ 0 0 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2671508789062 2 443.266876 884.519199 NaN NaN NaN NaN NaN NaN NaN 27.219 1 27.247 26.747 27.747 0.028664 0 0 0 0.90769 1 14141 14141 18.135 0 1 47658 5333 32093 32836 55634 55634 0.07232026711460549 PSSRRLGL 8 Unmodified _PSSRRLGL_ 0 0 0 nc|ENSG00000141448|Q92908-2|GATA6;ENSG00000141448|ENST00000269216|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 nc|ENSG00000141448|Q92908-2|GATA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2673034667969 2 443.266876 884.519199 1.1168 0.00049504 1.9099 0.0008466 3.0267 0.0013416 443.26763572478785 30.408 0.37208 26.911 26.698 27.07 -3.497 33 18 2 0 0 0 0.44629 1 17218 17218 39.957 7.6518 1 18044000 47659 5333 32093 32836 55635 55635 0.07232026711460549 PSSSHGSMGGY 11 Unmodified _PSSSHGSMGGY_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18 ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 MSMS AL20221201_MKP_PDAC_01 4 533.718505859375 2 533.716556 1065.41856 NaN NaN NaN NaN NaN NaN NaN 23.557 1 20.729 20.229 21.229 -2.8273 0 0 0 0.76159 1 12757 12757 13.906 1.3745 1 47660 5321 32094 32837 55636 55636 -0.11153418124331438 PSSSSRGL 8 Unmodified _PSSSSRGL_ 0 0 0 ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENST00000490764.5_1_2:234327938-234366271:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.7066345214844 2 395.706317 789.398081 NaN NaN NaN NaN NaN NaN NaN 26.707 1 23.756 23.256 24.256 -2.9511 0 0 0 0.6528 1 14745 14745 30.637 0 1 47661 14267 32095 32838 55637 55637 -0.005042207218480144 PSSTIFVMYSL 11 Unmodified _PSSTIFVMYSL_ 0 0 0 REV__nc|ENSG00000117697|Q96IY1-2|NSL1 REV__nc|ENSG00000117697|Q96IY1-2|NSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8167724609375 2 622.815207 1243.61586 -0.15106 -9.4085E-05 2.228 0.0013876 2.0769 0.0012935 622.8168320554189 69.84 0.33727 69.361 69.064 69.401 -0.47903 22 14 2 0 0 0 0.39949 1 38104 38104 21.537 12.154 1 1329700 + 47662 29594 32096 32839 55638 55638 0.003797883657625789 PSSVDSTDSF 10 Unmodified _PSSVDSTDSF_ 0 0 0 ENSG00000175318|ENST00000309731|GRAMD2A;ENST00000564773.1_1_15:72455693-72456104:-|nuORF;ENST00000567662.5_1_15:72455885-72456104:-|nuORF;ENST00000565233.5_1_15:72454352-72456104:-|nuORF;ENST00000564184.1_1_15:72455114-72459029:-|nuORF ENSG00000175318|ENST00000309731|GRAMD2A ENSG00000175318|ENST00000309731|GRAMD2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.223388671875 2 521.222194 1040.42983 0.21721 0.00011321 -0.70626 -0.00036812 -0.48905 -0.0002549 521.2235086109957 56.484 0.39752 56.484 56.265 56.662 0 36 17 3 0 0 0 0.24625 1 31422 31422 30.637 11.38 1 5449500 47663 8509 32097 32840 55639 55639 -0.0887631754924314 PSSVPAYPT 9 Unmodified _PSSVPAYPT_ 0 0 0 ENST00000455873.7_2_15:69222974-69318872:+|nuORF ENST00000455873.7_2_15:69222974-69318872:+|nuORF ENST00000455873.7_2_15:69222974-69318872:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7508850097656 2 459.732 917.449448 -0.22065 -0.00010144 3.1045 0.0014272 2.8838 0.0013258 459.7335019441657 56.839 0.2527 56.354 56.226 56.479 -0.48554 18 11 2 0 0 0 0.1474 1 30857 30857 21.747 8.2388 1 709150 47664 13591 32098 32841 55640 55640 -0.012578967478134473 PSSVQHLWW 9 Unmodified _PSSVQHLWW_ 0 0 0 ENST00000505325.1_1_5:60642967-60643258:+|nuORF ENST00000505325.1_1_5:60642967-60643258:+|nuORF ENST00000505325.1_1_5:60642967-60643258:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5249938964844 3 380.525936 1138.55598 0.60313 0.00022951 -1.5443 -0.00058766 -0.9412 -0.00035815 380.52542731631956 23.256 0.23314 20.477 20.429 20.662 -2.7784 30 19 2 0 0 0 0.16226 1 12569 12569 19.362 3.6233 1 5406300 47665 14512 32099 32842 55641 55641 -0.007757214626280984 PSSVVGLG 8 Unmodified _PSSVVGLG_ 0 0 0 ENST00000497039.1_1_2:65298581-65300050:+|nuORF;nc|ENSG00000011523|Q76N32-2|CEP68;ENSG00000011523|ENST00000377990|CEP68 ENST00000497039.1_1_2:65298581-65300050:+|nuORF ENST00000497039.1_1_2:65298581-65300050:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2027893066406 2 358.202879 714.391205 0.01775 6.3583E-06 1.7908 0.00064147 1.8086 0.00064783 358.2030616699077 34.426 0.4031 34.453 34.265 34.668 0.027401 26 18 2 0 0 0 0.81107 1 18176 18176 0 0 1 1702600 47666 452 32100 32843 55642 55642 0.022584663975976582 PSSYWHSY 8 Unmodified _PSSYWHSY_ 0 0 0 REV__nc|ENSG00000006377|P56179|DLX6 REV__nc|ENSG00000006377|P56179|DLX6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.3037719726562 2 513.719424 1025.4243 0.55171 0.00028342 0.12565 6.4551E-05 0.67736 0.00034797 513.7195367991644 66.955 0.36271 60.779 60.599 60.962 -6.1757 36 20 2 0 0 0 8.7369 1 43625 43625 10.183 4.423 1 35633000 + 47667 16988 32101 32844 55643 55643 -0.08739951550364822 PSTDEATWAAV 11 Unmodified _PSTDEATWAAV_ 0 0 0 ENSG00000203942|ENST00000370640|C10orf62 ENSG00000203942|ENST00000370640|C10orf62 ENSG00000203942|ENST00000370640|C10orf62 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7243041992188 2 574.266936 1146.51932 0.44452 0.00025527 -0.17227 -9.8932E-05 0.27224 0.00015634 574.2665726810462 37.205 0.41328 37.205 36.936 37.35 0 37 20 2 0 0 0 0.29698 1 19824 19824 8.7454 8.7454 1 7165800 47668 10234 32102 32845 55644 55644 -0.048080628698699 PSTFMDMCLF 10 Unmodified _PSTFMDMCLF_ 0 0 0 REV__ENST00000557685.5_1_14:90263589-90390924:-|nuORF REV__ENST00000557685.5_1_14:90263589-90390924:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2474975585938 2 596.247788 1190.48102 -0.35824 -0.0002136 -0.57515 -0.00034293 -0.93339 -0.00055653 596.247430924181 23.623 0.56825 23.623 23.469 24.037 0 79 28 4 0 0 0 0.6606 1 12003 12003 7.2892 0.56607 1 6522500 + 47669 28792 32103 32846 55645 55645 -0.10659731372061287 PSTHHIGV 8 Unmodified _PSTHHIGV_ 0 0 0 nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B nc|ENSG00000171495|Q7Z745-2|MROH2B nc|ENSG00000171495|Q7Z745-2|MROH2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.2256469726562 2 424.224677 846.434801 NaN NaN NaN NaN NaN NaN NaN 18.107 1 18.121 17.621 18.621 0.013865 0 0 0 0.97444 1 9053 9053 0.79363 0 1 47670 8110 32104 32847 55646 55646 0.005440758947315771 PSTLASTYL 9 Unmodified _PSTLASTYL_ 0 0 0 ENST00000495258.1_1_X:48855574-48855907:-|nuORF ENST00000495258.1_1_X:48855574-48855907:-|nuORF ENST00000495258.1_1_X:48855574-48855907:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 952.4859008789062 1 952.498589 951.491313 0.59432 0.00056609 -1.13 -0.0010763 -0.53566 -0.00051022 952.4979490914386 73.371 0.61964 67.195 66.97 67.589 -6.1757 68 29 3 0 0 0 0.070838 1 47876 47876 39.957 1.9833 1 165730000 47671 14349 32105 32848 55647 55647 0.013626589406953826 PSTLISATP 9 Unmodified _PSTLISATP_ 0 0 0 REV__ENST00000307076.8_1_3:52568817-52569024:-|nuORF REV__ENST00000307076.8_1_3:52568817-52569024:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7480163574219 2 443.74765 885.480748 0.52196 0.00023162 1.4415 0.00063968 1.9635 0.0008713 443.7478801394866 72.081 0.28238 71.605 71.469 71.752 -0.47609 17 11 2 0 0 0 0.49272 1 39477 39477 7.9102 0 1 494340 + 47672 25386 32106 32849 55648 55648 0.033426762862859505 PSTLISATP 9 Unmodified _PSTLISATP_ 0 0 0 REV__ENST00000307076.8_1_3:52568817-52569024:-|nuORF REV__ENST00000307076.8_1_3:52568817-52569024:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.74765 885.480748 0.52196 0.00023162 1.4415 0.00063968 1.9635 0.0008713 443.7478801394866 72.081 0.28238 71.605 71.469 71.752 -0.47609 0 0 NaN 7.9102 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 494340 + 47673 25386 32106 32849 0.033426762862859505 PSTLLNPTEL 10 Unmodified _PSTLLNPTEL_ 0 0 0 ENSG00000100625|ENST00000216513|SIX4 ENSG00000100625|ENST00000216513|SIX4 ENSG00000100625|ENST00000216513|SIX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.2012939453125 3 362.201007 1083.58119 NaN NaN NaN NaN NaN NaN NaN 23.018 1 23.018 22.518 23.518 0 0 0 0 0.99248 1 11723 11723 0.62683 0 1 47674 1856 32107 32850 55649 55649 0.042742885492771165 PSTPTKTTY 9 Unmodified _PSTPTKTTY_ 0 0 0 ENSG00000136274|ENST00000490531|NACAD ENSG00000136274|ENST00000490531|NACAD ENSG00000136274|ENST00000490531|NACAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.75634765625 2 498.25584 994.497126 0.22195 0.00011059 -2.5048 -0.001248 -2.2828 -0.0011374 498.25435719549637 59.418 0.44721 58.927 58.685 59.132 -0.49079 38 20 3 0 0 0 0.41742 1 32313 32313 11.64 1.5664 1 1889900 47675 4811 32108 32851 55650 55650 -0.0003424254762194323 PSTREWQRERW 11 Unmodified _PSTREWQRERW_ 0 0 0 ENST00000523382.5_1_5:179225178-179228384:-|nuORF;ENST00000522293.5_1_5:179225178-179226553:-|nuORF ENST00000523382.5_1_5:179225178-179228384:-|nuORF ENST00000523382.5_1_5:179225178-179228384:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.5893249511719 3 510.923529 1529.74876 NaN NaN NaN NaN NaN NaN NaN 17.229 1 17.229 16.729 17.729 0 0 0 0 0.9428 1 8472 8472 0.50596 0.34663 1 47676 14768 32109 32852 55651 55651 0.005073688665788723 PSTSLPDVDAL 11 Unmodified _PSTSLPDVDAL_ 0 0 0 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.1936950683594 3 372.1924 1113.55537 0.99064 0.00036871 2.5861 0.00096252 3.5767 0.0013312 372.19332627330897 45.177 0.43062 40.325 40.083 40.513 -4.852 41 28 2 0 0 0 0.63851 1 27603 27603 4.7159 0.59929 1 18106000 + 47677 23738 32110 32853 55652 55652 0.003133943069997258 PSTSLPDVDAL 11 Unmodified _PSTSLPDVDAL_ 0 0 0 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 372.1924 1113.55537 -0.12886 -4.7961E-05 1.7912 0.00066667 1.6623 0.00061871 372.1928657931062 40.305 0.24181 40.305 40.17 40.412 0 -0.041036 -0.00063953 NaN 4.7159 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2389200 + 47678 23738 32110 32853 0.003133943069997258 PSTSLPDVDAL 11 Unmodified _PSTSLPDVDAL_ 0 0 0 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 372.1924 1113.55537 0.57966 0.00021574 2.8463 0.0010594 3.4259 0.0012751 372.1934346265155 40.711 0.36738 40.408 40.234 40.601 -0.30304 0.061764 0.00053855 NaN 4.7159 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4509400 + 47679 23738 32110 32853 0.003133943069997258 PSTSLPDVDAL 11 Unmodified _PSTSLPDVDAL_ 0 0 0 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 REV__nc|ENSG00000188848|Q6ZU67-5|BEND4 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 372.1924 1113.55537 0.99064 0.00036871 2.5861 0.00096252 3.5767 0.0013312 372.19332627330897 45.177 0.43062 40.325 40.083 40.513 -4.852 -0.020728 0.00024803 NaN 4.7159 41 28 2 NaN NaN NaN NaN 0 NaN NaN 0 18106000 + 47680 23738 32110 32853 0.003133943069997258 PSTSLSTDEFL 11 Unmodified _PSTSLSTDEFL_ 0 0 0 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1 MSMS AL20221201_MKP_PDAC_01 4 598.7897338867188 2 598.787701 1195.56085 NaN NaN NaN NaN NaN NaN NaN 96.578 1 90.402 89.902 90.902 -6.1757 0 0 0 0.58065 1 64004 64004 21.537 3.402 1 + 47681 19955 32111 32854 55653 55653 -0.02910926901199673 PSTTKPNEGFY 11 Unmodified _PSTTKPNEGFY_ 0 0 0 REV__ENSG00000184922|ENST00000331495|FMNL1 REV__ENSG00000184922|ENST00000331495|FMNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.7962036132812 2 620.79586 1239.57717 0.33045 0.00020514 0.46064 0.00028597 0.79109 0.00049111 620.7959281176602 55.201 0.2722 54.723 54.548 54.82 -0.47798 21 12 2 0 0 0 0.42108 1 29931 29931 20.415 0 1 2267900 + 47682 23452 32112 32855 55654 55654 -0.03303800944422619 PSTTLWEEHKE 11 Unmodified _PSTTLWEEHKE_ 0 0 0 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.3263549804688 2 678.825149 1355.63574 -0.57031 -0.00038714 0.92148 0.00062552 0.35117 0.00023838 679.3269829647304 35.133 0.17497 35.133 35.034 35.209 0 21 8 3 0 0 0 0.65108 1 18586 18586 8.7454 0 1 2538100 + 47683 22596 32113 32856 55655 55655 -0.027847443699556607 PSTVASSAPPA 11 Unmodified _PSTVASSAPPA_ 0 0 0 REV__nc|ENSG00000143190|P14859-3|POU2F1 REV__nc|ENSG00000143190|P14859-3|POU2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 984.50146484375 1 984.499652 983.492375 0.33134 0.00032621 3.2971 0.003246 3.6284 0.0035722 984.5034482016991 67.251 0.21882 66.769 66.695 66.914 -0.48218 13 9 2 0 0 0 0.46578 1 36776 36776 18.146 2.2992 1 866890 + 47684 29674 32114 32857 55656 55656 -3.1266903874893615E-05 PSVDAPREGP 10 Unmodified _PSVDAPREGP_ 0 0 0 REV__ENSG00000100368|ENST00000403662|CSF2RB REV__ENSG00000100368|ENST00000403662|CSF2RB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7537231445312 2 512.756538 1023.49852 0.3443 0.00017654 -3.8782 -0.0019886 -3.5339 -0.001812 512.7535529012818 89.053 0.29005 88.548 88.298 88.589 -0.50423 19 12 3 0 0 0 0.71276 1 48685 48685 1.4819 0 1 204180 + 47685 18053 32115 32858 55657 55657 -0.012286084588595259 PSVEDGFQTV 10 Unmodified _PSVEDGFQTV_ 0 0 0 ENSG00000170091|ENST00000303177|NSG2 ENSG00000170091|ENST00000303177|NSG2 ENSG00000170091|ENST00000303177|NSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7567749023438 2 539.756204 1077.49785 -0.15935 -8.6012E-05 3.0776 0.0016612 2.9183 0.0015751 539.7575187201132 69.421 0.34457 68.942 68.764 69.109 -0.47903 27 14 3 0 0 0 0.16361 1 37929 37929 38.176 5.3899 1 2573300 47686 7949 32116 32859 55658 55658 -0.03779447898568833 PSVEESQFGQ 10 Unmodified _PSVEESQFGQ_ 0 0 0 REV__ENSG00000104953|ENST00000246112|TLE6 REV__ENSG00000104953|ENST00000246112|TLE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2518920898438 2 554.251286 1106.48802 0.60112 0.00033317 1.1797 0.00065386 1.7808 0.00098703 554.2520044093473 94.142 0.41028 93.721 93.479 93.89 -0.42044 53 22 3 0 0 0 0.52097 2 51409 51409;51506 15.248 5.0979 1 2538000 + 47687 18391 32117 32860 55659;55660 55659 -0.060966359039412055 PSVEINLSY 9 Unmodified _PSVEINLSY_ 0 0 0 REV__ENSG00000263429|ENST00000581851|TMEM238L REV__ENSG00000263429|ENST00000581851|TMEM238L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.26416015625 2 511.263665 1020.51278 0.66367 0.00033931 0.11323 5.7888E-05 0.77689 0.0003972 511.26370015875233 47.479 0.66281 47.479 47.212 47.875 0 78 30 4 0 0 0 0.39863 1 26194 26194 12.532 0.89125 1 36790000 + 47688 24598 32118 32861 55661 55661 0.0033404396941705272 PSVEPFFSL 9 Unmodified _PSVEPFFSL_ 0 0 0 REV__ENST00000434373.3_1_7:33644718-33644835:+|nuORF REV__ENST00000434373.3_1_7:33644718-33644835:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.762451171875 2 511.7633 1021.51205 -0.97703 -0.00050001 -0.053472 -2.7365E-05 -1.0305 -0.00052737 511.7631949679959 77.962 0.36671 77.479 77.269 77.636 -0.4826 81 30 3 0 0 0 0.2001 1 42625 42625 23.148 23.148 1 12014000 + 47689 27009 32119 32862 55662 55662 0.0021524932037664257 PSVFKWMYFYF 11 Unmodified _PSVFKWMYFYF_ 0 0 0 REV__ENSG00000197106|ENST00000331565|SLC6A17 REV__ENSG00000197106|ENST00000331565|SLC6A17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.27392578125 3 505.57742 1513.71043 1.4719 0.00074415 -2.8875 -0.0014599 -1.4156 -0.00071571 505.91033826319074 50.086 0.12036 50.037 49.986 50.107 -0.048824 7 5 2 0 0 0 0.30558 1 27115 27115 2.4348 1.9288 1 722810 + 47690 23894 32120 32863 55663 55663 -0.025876530922914753 PSVFYKEIMEA 11 Unmodified _PSVFYKEIMEA_ 0 0 0 REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000153253|Q9NY46-4|SCN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.3297119140625 2 657.325939 1312.63732 0.32479 0.00021349 1.8874 0.0012406 2.2122 0.0014541 657.3280473466905 41.33 0.20144 41.329 41.2 41.402 -0.0017929 20 9 3 0 0 0 0.37147 1 22082 22082 34.932 12.196 1 3705400 + 47691 21165 32121 32864 55664 55664 -0.006488266055612257 PSVHCAAWVL 10 Unmodified _PSVHCAAWVL_ 0 0 0 ENST00000458001.2_1_13:114546204-114546789:+|nuORF ENST00000458001.2_1_13:114546204-114546789:+|nuORF ENST00000458001.2_1_13:114546204-114546789:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.27685546875 2 541.776219 1081.53789 0.22564 0.00012225 -2.8431 -0.0015403 -2.6174 -0.0014181 542.2758874089078 76.709 0.26791 76.709 76.491 76.759 0 19 10 2 0 0 0 0.69064 1 42580 42580 3.9444 0 1 692280 47692 13622 32122 32865 55665 55665 0.0003782029100420914 PSVLLCTSPF 10 Unmodified _PSVLLCTSPF_ 0 0 0 REV__ENST00000477149.5_1_2:238486577-238486817:-|nuORF REV__ENST00000477149.5_1_2:238486577-238486817:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2809448242188 2 532.27826 1062.54197 0.94921 0.00050524 3.1379 0.0016702 4.0871 0.0021755 532.2794491902232 38.15 0.44331 33.781 33.473 33.916 -4.3689 59 26 3 0 0 0 0.33553 1 22504 22504 25.399 3.8623 1 33979000 + 47693 27607 32123 32866 55666 55666 0.01319864994047748 PSVNPELNTI 10 Unmodified _PSVNPELNTI_ 0 0 0 REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2182006835938 3 361.860873 1082.56079 -0.031992 -1.1577E-05 2.5867 0.00093603 2.5547 0.00092446 361.8617696415741 15.047 0.16615 15.053 14.949 15.116 0.0057774 9 7 2 0 0 0 0.23489 1 7453 7453 9.544 1.3884 1 1067400 + 47694 24834 32124 32867 55667 55667 0.022811178894926343 PSVPFPLLSP 10 Unmodified _PSVPFPLLSP_ 0 0 0 REV__ENST00000606994.1_1_5:32174617-32174671:+|nuORF REV__ENST00000606994.1_1_5:32174617-32174671:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7696533203125 2 527.302593 1052.59063 0.2868 0.00015123 0.99305 0.00052364 1.2798 0.00067487 527.3034477513636 78.29 0.21209 78.342 78.156 78.368 0.052452 10 8 2 0 0 0 0.23412 1 43183 43183 5.7319 0 1 2779700 + 47695 29302 32125 32868 55668 55668 0.06644101625465737 PSVPQSLPSL 10 Unmodified _PSVPQSLPSL_ 0 0 0 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.78759765625 2 512.787307 1023.56006 0.39877 0.00020448 0.25027 0.00012834 0.64904 0.00033282 513.2889436344833 83.961 0.35521 83.462 83.217 83.572 -0.49961 18 14 2 0 0 0 0.57893 1 45934 45934 12.241 0.60036 1 792090 47696 8077 32126 32869 55669 55669 0.049223232404415285 PSVRDRSFIF 10 Unmodified _PSVRDRSFIF_ 0 0 0 REV__nc|ENSG00000174898|Q86XM0-2|CATSPERD REV__nc|ENSG00000174898|Q86XM0-2|CATSPERD MSMS AL20221201_MKP_PDAC_01 4 612.3285522460938 2 612.330205 1222.64586 NaN NaN NaN NaN NaN NaN NaN 89.47 1 83.294 82.794 83.794 -6.1757 0 0 0 0.71157 1 59061 59061 16.149 1.7437 1 + 47697 29794 32127 32870 55670 55670 0.04343908145938258 PSVREQLAL 9 Unmodified _PSVREQLAL_ 0 0 0 ENST00000460261.5_1_1:52822810-52825784:-|nuORF;ENST00000491136.6_1_1:52820057-52823576:-|nuORF;nc|ENSG00000154222|Q5T0F9-3|CC2D1B;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B ENST00000460261.5_1_1:52822810-52825784:-|nuORF ENST00000460261.5_1_1:52822810-52825784:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.794921875 2 506.792924 1011.57129 0.53473 0.000271 0.85475 0.00043318 1.3895 0.00070418 506.7934977587921 47.22 0.23616 47.22 47.103 47.339 0 18 10 2 0 0 0 0.15471 1 25876 25876 27.629 0 1 1725600 47698 6306 32128 32871 55671 55671 0.06597145334569632 PSVRNVEVI 9 Unmodified _PSVRNVEVI_ 0 0 0 ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000517561.1_1_5:77417682-77436990:-|nuORF ENSG00000132842|ENST00000255194|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7933654785156 2 506.792924 1011.57129 -0.0025719 -1.3034E-06 -0.30888 -0.00015654 -0.31145 -0.00015784 506.7928123176166 36.049 0.32285 36.074 35.907 36.23 0.024971 32 14 3 0 0 0 0.12424 1 19055 19055 30.637 3.7529 1 7086100 47699 4456 32129 32872 55672 55672 0.06597145334569632 PSVSDIFK 8 Unmodified _PSVSDIFK_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.484375 1 892.47746 891.470183 -0.16654 -0.00014863 0.46036 0.00041086 0.29382 0.00026222 892.477832234976 67.47 0.31926 66.988 66.822 67.142 -0.48218 26 13 3 0 0 0 0.67481 1 36869 36869 19.439 2.4967 1 3199200 47700 6148 32130 32873 55673 55673 0.020106936318711632 PSVSVYSLL 9 Unmodified _PSVSVYSLL_ 0 0 0 REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1 REV__nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7703247070312 2 482.771126 963.527698 NaN NaN NaN NaN NaN NaN NaN 81.894 1 81.399 80.899 81.899 -0.4952 0 0 0 0.50124 1 44840 44840 15.847 3.3156 1 + 47701 24520 32131 32874 55674 55674 0.04447535837448413 PSVTLYDPF 9 Unmodified _PSVTLYDPF_ 0 0 0 REV__ENSG00000113643|ENST00000231572|RARS1 REV__ENSG00000113643|ENST00000231572|RARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.76123046875 2 519.760758 1037.50696 0.36573 0.00019009 0.78745 0.00040929 1.1532 0.00059938 519.761015318039 89.6 0.41217 89.098 88.865 89.277 -0.50172 40 17 3 0 0 0 0.39863 1 48971 48971 12.532 0.89125 1 1629400 + 47702 18883 32132 32875 55675 55675 -0.010290545422321884 PSVTLYDPF 9 Unmodified _PSVTLYDPF_ 0 0 0 REV__ENSG00000113643|ENST00000231572|RARS1 REV__ENSG00000113643|ENST00000231572|RARS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.760758 1037.50696 0.36219 0.00018825 0.34927 0.00018153 0.71146 0.00036979 519.7609139188352 89.11 0.36919 89.11 88.936 89.306 0 0.0059304 -0.00023858 NaN 12.532 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 725050 + 47703 18883 32132 32875 -0.010290545422321884 PSVVHRSFAF 10 Unmodified _PSVVHRSFAF_ 0 0 0 REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF REV__ENST00000338785.7_1_21:38885923-38886019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8744506835938 3 382.873336 1145.59818 1.6137 0.00061782 -0.27465 -0.00010516 1.339 0.00051267 382.8732865066093 21.035 0.37901 18.342 18.167 18.546 -2.693 28 20 2 0 0 0 0.67413 1 11243 11243 5.7834 2.4638 1 2145300 + 47704 25676 32133 32876 55676 55676 0.031202539457581224 PSVVQHFG 8 Unmodified _PSVVQHFG_ 0 0 0 ENST00000561720.5_1_16:58529427-58541082:+|nuORF;nc|ENSG00000103034|Q9ULP0-4|NDRG4;ENSG00000103034|ENST00000570248|NDRG4;nc|ENSG00000103034|Q9ULP0-2|NDRG4;nc|ENSG00000103034|Q9ULP0-8|NDRG4;nc|ENSG00000103034|Q9ULP0-5|NDRG4;nc|ENSG00000103034|Q9ULP0-7|NDRG4;nc|ENSG00000103034|Q9ULP0-3|NDRG4;nc|ENSG00000103034|Q9ULP0-6|NDRG4 ENST00000561720.5_1_16:58529427-58541082:+|nuORF;nc|ENSG00000103034|Q9ULP0-2|NDRG4 nc|ENSG00000103034|Q9ULP0-2|NDRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7264404296875 2 435.727052 869.439552 -0.21083 -9.1865E-05 0.022624 9.8581E-06 -0.18821 -8.2007E-05 435.7270793943695 22.287 0.27973 22.287 22.143 22.423 0 21 13 2 0 0 0 0.80143 1 11306 11306 5.7604 0 1 1470700 47705 15331;16095 32134 32877 55677 55677 -0.00039039962518927496 PSWSGGGGGGG 11 Unmodified _PSWSGGGGGGG_ 0 0 0 REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF REV__ENST00000606082.5_1_2:54198066-54200871:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.1859130859375 2 438.185749 874.356944 NaN NaN NaN NaN NaN NaN NaN 22.627 1 22.65 22.15 23.15 0.022896 0 0 0 0.9435 1 11515 11515 0 0 1 + 47706 29294 32135 32878 55678 55678 -0.08525981761295043 PSWTADRVF 9 Unmodified _PSWTADRVF_ 0 0 0 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 REV__nc|ENSG00000116455|Q9BQA1-2|WDR77 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7703247070312 2 539.769448 1077.52434 -0.38172 -0.00020604 1.24 0.00066929 0.85824 0.00046325 539.7701895146074 56.733 0.32593 56.248 56.153 56.479 -0.48554 33 15 3 0 0 0 0.45045 1 30910 30910 10.074 0.6908 1 6102800 + 47707 19041 32136 32879 55679 55679 -0.011317142165808036 PSWVPVGH 8 Unmodified _PSWVPVGH_ 0 0 0 ENSG00000184560|ENST00000333870|SPEM2 ENSG00000184560|ENST00000333870|SPEM2 ENSG00000184560|ENST00000333870|SPEM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7304077148438 2 439.729595 877.444637 1.2047 0.00052974 -0.038096 -1.6752E-05 1.1666 0.00051299 439.7295812011169 87.696 0.65689 81.521 81.036 81.693 -6.1757 63 35 2 0 0 0 0.67481 1 57592 57592 19.439 4.8573 1 21443000 47708 9269 32137 32880 55680 55680 0.00101263900091908 PSYFLSIHH 9 Unmodified _PSYFLSIHH_ 0 0 0 REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.78125 2 550.779816 1099.54508 2.0629 0.0011362 -0.95156 -0.0005241 1.1113 0.00061209 550.7793351367575 94.803 0.41418 94.817 94.568 94.982 0.014244 28 15 2 0 0 0 0.43515 1 52629 52629 15.847 2.2323 1 2652900 + 47709 27544 32138 32881 55681 55681 -0.0007112383691492141 PSYGSSTI 8 Unmodified _PSYGSSTI_ 0 0 0 REV__ENSG00000112319|ENST00000355286|EYA4 REV__ENSG00000112319|ENST00000355286|EYA4 MSMS AL20221201_MKP_PDAC_01 4 406.5287475585938 2 406.195251 810.375948 NaN NaN NaN NaN NaN NaN NaN 87.857 1 81.681 81.181 82.181 -6.1757 0 0 0 0.97348 1 57945 57945 5.7604 0 1 + 47710 18811 32139 32882 55682 55682 -0.03682445190281669 PSYHVIAPII 10 Unmodified _PSYHVIAPII_ 0 0 0 REV__ENSG00000166796|ENST00000541669|LDHC REV__ENSG00000166796|ENST00000541669|LDHC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.2978515625 2 555.321317 1108.62808 1.4352 0.00079697 -0.41901 -0.00023269 1.0161 0.00056429 555.3207985636253 97.2 0.18098 91.025 90.974 91.155 -6.1757 14 9 2 0 0 0 0.071299 1 64412 64412 54.774 6.4277 1 6986300 + 47711 22150 32140 32883 55683 55683 0.07811192891063001 PSYLEVTPE 9 Unmodified _PSYLEVTPE_ 0 0 0 REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2 REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7561645507812 2 517.755672 1033.49679 0.20185 0.00010451 -0.65992 -0.00034168 -0.45806 -0.00023717 517.7553135757003 46.937 0.20472 46.937 46.839 47.044 0 11 9 2 0 0 0 0.2143 1 25693 25693 21.747 0 1 2847900 + 47712 19640 32141 32884 55684 55684 -0.018616622674926475 PSYLEVTPE 9 Unmodified _PSYLEVTPE_ 0 0 0 REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2 REV__nc|ENSG00000128881|Q6IQ55-2|TTBK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.755672 1033.49679 0.20185 0.00010451 -0.65992 -0.00034168 -0.45806 -0.00023717 517.7553135757003 46.937 0.20472 46.937 46.839 47.044 0 0 0 NaN 21.747 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2847900 + 47713 19640 32141 32884 -0.018616622674926475 PSYRHPRNY 9 Unmodified _PSYRHPRNY_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.29736328125 2 595.296696 1188.57884 -0.20943 -0.00012467 1.0162 0.00060494 0.80677 0.00048027 595.2977531186384 56.385 0.19035 56.385 56.284 56.474 0 13 8 2 0 0 0 0.49272 1 31404 31404 7.9102 3.1541 1 1314600 + 47714 23950 32142 32885 55685 55685 -0.007907023451252826 PSYRHPRNY 9 Unmodified _PSYRHPRNY_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 595.296696 1188.57884 -0.20943 -0.00012467 1.0162 0.00060494 0.80677 0.00048027 595.2977531186384 56.385 0.19035 56.385 56.284 56.474 0 -0.019941 -0.0001895 NaN 7.9102 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1314600 + 47715 23950 32142 32885 -0.007907023451252826 PSYRHPRNY 9 Unmodified _PSYRHPRNY_ 0 0 0 REV__ENSG00000197651|ENST00000358859|CCER1 REV__ENSG00000197651|ENST00000358859|CCER1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.296696 1188.57884 0.045418 2.7037E-05 1.6187 0.00096361 1.6641 0.00099065 595.2972257988914 56.91 0.33778 56.425 56.205 56.543 -0.48554 0.019941 0.00052782 NaN 7.9102 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1917600 + 47716 23950 32142 32885 -0.007907023451252826 PSYRPAMGF 9 Unmodified _PSYRPAMGF_ 0 0 0 nc|ENSG00000080854|Q9UPX0|IGSF9B;ENSG00000080854|ENST00000533871|IGSF9B nc|ENSG00000080854|Q9UPX0|IGSF9B nc|ENSG00000080854|Q9UPX0|IGSF9B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.3040161132812 2 513.247295 1024.48004 0.73441 0.00037694 -4.0026 -0.0020543 -3.2681 -0.0016774 513.2447567684636 68.545 0.34849 62.369 62.306 62.654 -6.1757 23 19 2 0 0 0 0.18521 1 44826 44826 11.64 0 1 15711000 47717 1310 32143 32886 55686 55686 -0.03122441634423012 PSYTAYNE 8 Unmodified _PSYTAYNE_ 0 0 0 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 REV__nc|ENSG00000216671|P0C7X3|CCNYL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2304992675781 2 472.70344 943.392327 -0.5403 -0.0002554 -1.3513 -0.00063875 -1.8916 -0.00089415 472.70302650430455 55.493 0.26728 55.493 55.305 55.573 0 28 11 4 0 0 0 8.7369 1 30781 30781 2.3027 2.3027 1 2270700 + 47718 29945 32144 32887 55687 55687 -0.08163364024187558 PSYYDSVPY 9 Unmodified _PSYYDSVPY_ 0 0 0 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 REV__nc|ENSG00000163082|Q8IWX5-2|SGPP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2151489257812 2 545.740022 1089.46549 0.73908 0.00040335 2.8628 0.0015624 3.6019 0.0019657 545.7423923456304 45.984 0.24686 45.984 45.918 46.164 0 17 11 2 0 0 0 0.19891 1 25170 25170 11.64 0.81637 1 3773500 + 47719 21723 32145 32888 55688 55688 -0.07566235301555935 PTAAARRV 8 Unmodified _PTAAARRV_ 0 0 0 REV__ENST00000534961.5_1_8:42742976-42751856:-|nuORF REV__ENST00000534961.5_1_8:42742976-42751856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2536010742188 2 421.253769 840.492984 0.90392 0.00038078 0.65579 0.00027626 1.5597 0.00065703 421.253981590881 70.604 1.0639 70.64 70.401 71.465 0.035515 83 48 3 0 0 0 0.80232 1 38805 38805 5.2307 2.3415 1 7673500 + 47720 28514 32146 32889 55689 55689 0.06635757539982023 PTAFPVAH 8 Unmodified _PTAFPVAH_ 0 0 0 REV__nc|ENSG00000090097|P57723-2|PCBP4 REV__nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 841.44482421875 1 839.441015 838.433738 0.19617 0.00016468 0.47957 0.00040257 0.67575 0.00056725 839.4413564798107 49.454 0.31596 49.062 48.922 49.238 -0.3923 34 15 3 0 0 0 0.74163 1 26581 26581 13.508 4.1604 1 9584800 + 47721 17851 32147 32890 55690 55690 0.00805861525805085 PTAFPVAH 8 Unmodified _PTAFPVAH_ 0 0 0 REV__nc|ENSG00000090097|P57723-2|PCBP4 REV__nc|ENSG00000090097|P57723-2|PCBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 839.44189453125 1 839.441015 838.433738 0.87343 0.00073319 0.29527 0.00024786 1.1687 0.00098106 839.4409806402103 54.865 0.50297 49 48.746 49.249 -5.8653 67 30 3 0 0 0 0.44122 1 34858 34858 40.449 0 1 43413000 + 47722 17851 32147 32890 55691 55691 0.00805861525805085 PTAGARQAPE 10 Unmodified _PTAGARQAPE_ 0 0 0 nc|ENSG00000096264|O95944-3|NCR2;nc|ENSG00000096264|O95944-2|NCR2;ENSG00000096264|ENST00000373089|NCR2 nc|ENSG00000096264|O95944-3|NCR2 nc|ENSG00000096264|O95944-3|NCR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2337646484375 2 499.256705 996.498858 0.31862 0.00015907 -3.8323 -0.0019133 -3.5137 -0.0017542 499.25524929261746 71.183 0.28622 70.706 70.505 70.791 -0.47735 15 12 2 0 0 0 0.22811 1 38866 38866 10.074 2.1638 1 554180 47723 16077 32148 32891 55692 55692 0.0004681126099512767 PTALLWYLA 9 Unmodified _PTALLWYLA_ 0 0 0 ENST00000395148.6_1_2:202001107-202001203:+|nuORF ENST00000395148.6_1_2:202001107-202001203:+|nuORF ENST00000395148.6_1_2:202001107-202001203:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2952270507812 2 524.29731 1046.58007 NaN NaN NaN NaN NaN NaN NaN 59.419 1 59.366 58.866 59.866 -0.053062 0 0 0 0.13852 1 32386 32386 38.151 16.614 1 47724 12762 32149 32892 55693 55693 0.05864118971044263 PTAPGLHCRS 10 Unmodified _PTAPGLHCRS_ 0 0 0 REV__ENST00000600076.5_1_19:14628087-14674061:+|nuORF REV__ENST00000600076.5_1_19:14628087-14674061:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7626953125 2 519.761101 1037.50765 1.5576 0.0008096 0.40161 0.00020874 1.9593 0.0010183 519.7621533821542 79.403 0.53427 73.228 72.93 73.464 -6.1757 95 30 4 0 0 0 0.35903 1 52017 52017 24.021 0.87215 1 167420000 + 47725 29245 32150 32893 55694 55694 -0.009605383741927653 PTAPGLHCRS 10 Unmodified _PTAPGLHCRS_ 0 0 0 REV__ENST00000600076.5_1_19:14628087-14674061:+|nuORF REV__ENST00000600076.5_1_19:14628087-14674061:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.761101 1037.50765 0.61419 0.00031923 -3.2656 -0.0016973 -2.6514 -0.0013781 520.258734117031 73.783 0.21904 73.307 73.229 73.448 -0.47588 0.039953 -0.0036929 NaN 24.021 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 639100 + 47726 29245 32150 32893 -0.009605383741927653 PTAPRSSPD 9 Unmodified _PTAPRSSPD_ 0 0 0 REV__ENSG00000196872|ENST00000397899|CRACDL REV__ENSG00000196872|ENST00000397899|CRACDL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2841491699219 2 464.230156 926.445759 0.89822 0.00041698 1.1314 0.00052525 2.0297 0.00094223 464.2306492602179 47.449 0.38769 47.449 47.171 47.558 0 37 17 3 0 0 0 0.209 1 25850 25850 7.2892 0.93513 1 9883900 + 47727 23878 32151 32894 55695 55695 -0.02040566521668552 PTAPVNKPPL 10 Unmodified _PTAPVNKPPL_ 0 0 0 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.30517578125 2 517.305667 1032.59678 0.085064 4.4004E-05 0.42198 0.00021829 0.50705 0.0002623 517.3057964303981 54.258 0.22013 54.191 54.041 54.262 -0.066936 15 10 2 0 0 0 0.54684 1 29476 29476 13.906 0 1 1475000 + 47728 19149 32152 32895 55696 55696 0.08178619856994374 PTAQEEALY 9 Unmodified _PTAQEEALY_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2462463378906 2 511.245472 1020.47639 NaN NaN NaN NaN NaN NaN NaN 30.617 1 30.617 30.117 31.117 0 0 0 0 0.41346 1 15913 15913 19.257 1.122 1 + 47729 20317 32153 32896 55697 55697 -0.033028329272838164 PTASPFPLLL 10 Unmodified _PTASPFPLLL_ 0 0 0 nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2443237304688 2 528.310418 1054.60628 0.42733 0.00022576 -0.0010157 -5.3661E-07 0.42631 0.00022522 528.3099503397565 70.122 0.31034 70.157 70.001 70.312 0.035515 34 15 3 0 0 0 0.23227 1 38662 38662 10.824 10.824 1 6583000 47730 4725 32154 32897 55698 55698 0.08116388142525466 PTASPSLSY 9 Unmodified _PTASPSLSY_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4493408203125 1 922.451639 921.444362 -0.30302 -0.00027952 -2.0224 -0.0018656 -2.3255 -0.0021451 922.4495323741021 33.415 0.18483 33.415 33.285 33.47 0 13 9 2 0 0 0 0.095405 1 17484 17484 34.102 5.6156 1 3743200 47731 3952 32155 32898 55699 55699 -0.01950200610428965 PTASPSLSY 9 Unmodified _PTASPSLSY_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7532653808594 2 461.729458 921.444362 0.08412 3.8841E-05 0.7756 0.00035812 0.85972 0.00039696 461.72949415765976 33.419 0.1693 33.419 33.264 33.434 0 13 8 2 0 0 0 0.17718 1 17525 17525 10.074 0 1 3396300 47732 3952 32155 32898 55700 55700 -0.01950200610428965 PTCSFHDVNL 10 Unmodified _PTCSFHDVNL_ 0 0 0 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7588500976562 2 566.758223 1131.50189 0.71009 0.00040245 0.65894 0.00037346 1.369 0.00077591 566.7586216612566 60.211 0.34497 60.211 60.023 60.368 0 26 14 2 0 0 0 0.46514 1 33535 33535 18.146 0 1 12013000 + 47733 22596 32156 32899 55701 55701 -0.0585968167649753 PTCSFHDVNL 10 Unmodified _PTCSFHDVNL_ 0 0 0 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 566.758223 1131.50189 0.031475 1.7839E-05 -1.1873 -0.00067292 -1.1558 -0.00065508 566.7582136049361 60.716 0.20278 60.227 60.089 60.291 -0.48932 0.0076121 -0.0017466 NaN 18.146 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 4816100 + 47734 22596 32156 32899 -0.0585968167649753 PTCSYQQISCL 11 Unmodified _PTCSYQQISCL_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8556823730469 3 414.854625 1241.54204 -0.61495 -0.00025512 0.91428 0.00037929 0.29933 0.00012418 414.8551875431377 28.808 0.36287 28.808 28.6 28.963 0 35 17 3 0 0 0 0.67922 1 14880 14880 2.8433 0 1 4640600 47735 4391 32157 32900 55702 55702 -0.06906503068216807 PTCWWVQCY 9 Unmodified _PTCWWVQCY_ 0 0 0 REV__ENST00000497927.5_1_20:33462930-33496606:+|nuORF REV__ENST00000497927.5_1_20:33462930-33496606:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2454833984375 2 593.246437 1184.47832 0.18926 0.00011228 -0.67429 -0.00040002 -0.48503 -0.00028774 593.2457075627017 31.419 0.18552 31.419 31.296 31.482 0 11 8 2 0 0 0 0.54444 1 16388 16388 4.756 0 1 1244000 + 47736 27986 32158 32901 55703 55703 -0.10653818714672525 PTDDSPKYNYS 11 Unmodified _PTDDSPKYNYS_ 0 0 0 ENSG00000124608|ENST00000244571|AARS2 ENSG00000124608|ENST00000244571|AARS2 ENSG00000124608|ENST00000244571|AARS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2359924316406 3 429.522697 1285.54626 0.93866 0.00040317 0.91462 0.00039285 1.8533 0.00079602 429.52310848087535 64.319 0.25745 64.309 64.194 64.451 -0.010529 20 12 2 0 0 0 0.30587 1 35175 35175 0.40827 0 1 4324000 47737 3806 32159 32902 55704 55704 -0.08508999049308841 PTDPRRGAVS 10 Unmodified _PTDPRRGAVS_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8070678710938 2 528.283254 1054.55196 -0.027069 -1.43E-05 -1.4295 -0.00075517 -1.4565 -0.00076947 528.2829300387831 56.946 0.25749 56.461 56.286 56.543 -0.48554 22 11 3 0 0 0 0.23162 1 30855 30855 12.241 1.4167 1 1417600 47738 5968 32160 32903 55705 55705 0.026861890436521207 PTDRNLCHF 9 Unmodified _PTDRNLCHF_ 0 0 0 ENSG00000104524|ENST00000495276|PYCR3;nc|ENSG00000104524|Q53H96-2|PYCR3;ENST00000482616.1_1_8:144689086-144691718:-|nuORF ENSG00000104524|ENST00000495276|PYCR3 ENSG00000104524|ENST00000495276|PYCR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1757202148438 3 368.174797 1101.50256 1.1222 0.00041315 2.1534 0.00079283 3.2756 0.001206 368.1759310198657 33.029 0.35439 29.173 28.887 29.241 -3.8562 27 21 2 0 0 0 0.43463 1 18888 18888 7.1017 2.3858 1 14443000 47739 2214 32161 32904 55706 55706 -0.04412842236797587 PTDRRPAE 8 Unmodified _PTDRRPAE_ 0 0 0 REV__nc|ENSG00000133816|O94851-2|MICAL2 REV__nc|ENSG00000133816|O94851-2|MICAL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.740478515625 2 471.243598 940.472643 0.90621 0.00042705 3.027 0.0014264 3.9332 0.0018535 471.2447917558854 34.876 0.35977 30.781 30.632 30.991 -4.0951 33 20 2 0 0 0 8.7369 1 20125 20125 10.824 0.75 1 12631000 + 47740 19936 32162 32905 55707 55707 2.5420895212846517E-05 PTEAPGLRCTF 11 Unmodified _PTEAPGLRCTF_ 0 0 0 REV__ENST00000409790.5_2_16:11272691-11272832:+|nuORF REV__ENST00000409790.5_2_16:11272691-11272832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2949829101562 2 596.294973 1190.57539 0.001188 7.084E-07 -0.53495 -0.00031899 -0.53376 -0.00031828 596.2948013938485 34.281 0.33244 34.308 34.123 34.456 0.027401 23 15 2 0 0 0 0.48615 1 18032 18032 17.113 0.96379 1 1809700 + 47741 26700 32163 32906 55708 55708 -0.012271332340560548 PTEILYLTV 9 Unmodified _PTEILYLTV_ 0 0 0 ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14;ENST00000447144.5_1_3:9714379-9730718:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.8007202148438 2 524.799883 1047.58521 0.47483 0.00024919 1.1148 0.00058504 1.5896 0.00083424 524.8006794689835 78.122 0.23985 78.122 78.004 78.244 0 14 9 2 0 0 0 0.41742 1 43438 43438 11.64 6.8843 1 298570 47742 7057 32164 32907 55709 55709 0.06332378042975506 PTEILYLTV 9 Unmodified _PTEILYLTV_ 0 0 0 ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14;ENST00000447144.5_1_3:9714379-9730718:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8004760742188 2 524.799883 1047.58521 1.2145 0.00063735 -2.1598 -0.0011334 -0.94529 -0.00049609 524.8000812839178 86.257 0.74213 80.081 79.596 80.338 -6.1757 96 40 3 0 0 0 0.042911 1 56873 56873 48.346 14.243 1 40172000 47743 7057 32164 32907 55710 55710 0.06332378042975506 PTEILYLTV 9 Unmodified _PTEILYLTV_ 0 0 0 ENST00000414996.1_1_3:9710441-9730764:+|nuORF;nc|ENSG00000163719|Q8NCE2-3|MTMR14;nc|ENSG00000163719|Q8NCE2-2|MTMR14;ENSG00000163719|ENST00000296003|MTMR14;ENST00000447144.5_1_3:9714379-9730718:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF ENST00000414996.1_1_3:9710441-9730764:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.799883 1047.58521 -0.18283 -9.5951E-05 1.6184 0.00084935 1.4356 0.0007534 524.8006855470223 78.631 0.32349 78.145 77.971 78.295 -0.48596 0.011239 0.00011581 NaN 11.64 33 12 4 NaN NaN NaN NaN 0 NaN NaN 0 2601600 47744 7057 32164 32907 0.06332378042975506 PTEIQSLLF 9 Unmodified _PTEIQSLLF_ 0 0 0 ENSG00000170790|ENST00000641461|OR10A2;ENSG00000166363|ENST00000299454|OR10A5 ENSG00000170790|ENST00000641461|OR10A2 ENSG00000170790|ENST00000641461|OR10A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2909545898438 2 524.289682 1046.56481 0.32268 0.00016918 -0.98836 -0.00051819 -0.66568 -0.00034901 524.289599335617 91.974 0.27847 91.493 91.308 91.587 -0.48093 26 16 2 0 0 0 0.48152 1 50225 50225 8.5933 3.8373 1 592650 47745 7478 32165 32908 55711 55711 0.04339207383191024 PTEKDLLY 8 Unmodified _PTEKDLLY_ 0 0 0 REV__ENSG00000081014|ENST00000261842|AP4E1 REV__ENSG00000081014|ENST00000261842|AP4E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7607421875 2 489.760758 977.506963 0.54259 0.00026574 -0.58269 -0.00028538 -0.040108 -1.9643E-05 489.76058860286736 50.889 0.30592 50.889 50.744 51.05 0 37 18 3 0 0 0 0.44629 1 28152 28152 39.957 13.074 1 5611900 + 47746 17678 32166 32909 55712 55712 0.017309454577684846 PTEMDSYWAT 10 Unmodified _PTEMDSYWAT_ 0 0 0 REV__nc|ENSG00000291110|Q309B1|TRIM16L REV__nc|ENSG00000291110|Q309B1|TRIM16L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7460327148438 2 600.747521 1199.48049 -0.78284 -0.00047029 -1.2708 -0.00076343 -2.0536 -0.0012337 600.7462590161899 33.096 0.31674 33.096 32.948 33.264 0 34 15 3 0 0 0 0.42068 1 17288 17288 20.454 1.1966 1 6705100 + 47747 24365 32167 32910 55713 55713 -0.1112711149585266 PTESAILYY 9 Unmodified _PTESAILYY_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7665405273438 2 528.76604 1055.51753 0.58403 0.00030881 -0.09258 -4.8953E-05 0.49145 0.00025986 528.7656791800454 68.936 0.3532 68.961 68.77 69.123 0.025154 27 16 2 0 0 0 0.28047 1 37884 37884 18.135 0 1 2160000 + 47748 18101 32168 32911 55714 55714 -0.00801071887804028 PTESCDPCCV 10 Unmodified _PTESCDPCCV_ 0 0 0 REV__ENST00000320776.4_1_4:6718763-6718838:+|nuORF REV__ENST00000320776.4_1_4:6718763-6718838:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.1881103515625 2 527.187928 1052.3613 NaN NaN NaN NaN NaN NaN NaN 20.837 1 20.837 20.337 21.337 0 0 0 0 0.99091 1 10505 10505 1.6526 0.85899 1 + 47749 25504 32169 32912 55715 55715 -0.16278344716602078 PTETFLSDFL 10 Unmodified _PTETFLSDFL_ 0 0 0 nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3;nc|ENSG00000079337|O95398-2|RAPGEF3 nc|ENSG00000079337|O95398-3|RAPGEF3 nc|ENSG00000079337|O95398-3|RAPGEF3 MSMS AL20221201_MKP_PDAC_01 4 585.2872314453125 2 585.289879 1168.56521 NaN NaN NaN NaN NaN NaN NaN 56.805 1 50.828 50.328 51.328 -5.9769 0 0 0 0.16406 1 36281 36281 46.021 3.9264 1 47750 1274 32170 32913 55716 55716 -0.012334176876265701 PTETLQELL 9 Unmodified _PTETLQELL_ 0 0 0 ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000162645|ENST00000370466|GBP2;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.28466796875 2 522.284597 1042.55464 0.86426 0.00045139 -0.1497 -7.8184E-05 0.71457 0.00037321 522.2844934320428 69.521 0.47269 63.345 63.071 63.544 -6.1757 65 24 3 0 0 0 0.08691 1 45391 45391 36.127 0.082828 1 74626000 47751 3290;6888 32171 32914 55717 55717 0.035065996579760395 PTEVQHLIK 9 Unmodified _PTEVQHLIK_ 0 0 0 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2688598632812 2 532.808574 1063.60259 0.24476 0.00013041 -0.44664 -0.00023798 -0.20188 -0.00010756 532.8082618450298 64.906 0.12343 64.906 64.831 64.955 0 7 5 2 0 0 0 0.19613 1 36215 36215 7.9102 1.187 1 699310 47752 2600 32172 32915 55718 55718 0.07333718368658992 PTEVQHLIK 9 Unmodified _PTEVQHLIK_ 0 0 0 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.808574 1063.60259 0.16439 8.7588E-05 -0.58623 -0.00031235 -0.42184 -0.00022476 532.8083624585048 65.35 0.3168 64.866 64.684 65 -0.48428 -0.020113 -4.0846E-05 NaN 15.847 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4039400 47753 2600 32172 32915 0.07333718368658992 PTEWTVTI 8 Unmodified _PTEWTVTI_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7479858398438 2 473.74765 945.480748 0.68197 0.00032308 -0.79925 -0.00037864 -0.11728 -5.5562E-05 473.74758685765437 72.141 0.32358 71.665 71.469 71.793 -0.47609 18 13 2 0 0 0 0.72953 1 39480 39480 14.582 2.0501 1 492720 + 47754 17414 32173 32916 55719 55719 0.005826762863080148 PTEWTVTI 8 Unmodified _PTEWTVTI_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.74765 945.480748 0.68197 0.00032308 -0.79925 -0.00037864 -0.11728 -5.5562E-05 473.74758685765437 72.141 0.32358 71.665 71.469 71.793 -0.47609 0 0 NaN 14.582 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 492720 + 47755 17414 32173 32916 0.005826762863080148 PTFDAYYP 8 Unmodified _PTFDAYYP_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7639770507812 2 487.218726 972.422899 0.31521 0.00015357 -0.14904 -7.2613E-05 0.16617 8.0962E-05 487.21857510835935 66.105 0.57246 66.105 65.898 66.47 0 37 26 2 0 0 0 8.7369 1 36991 36991 9.3474 0 1 757770 47756 10627 32174 32917 55720 55720 -0.06441585639151981 PTFDFIDIS 9 Unmodified _PTFDFIDIS_ 0 0 0 REV__nc|ENSG00000204113|Q5H9B9|BMP2KL REV__nc|ENSG00000204113|Q5H9B9|BMP2KL MSMS AL20221201_MKP_PDAC_01 4 352.1752014160156 3 352.174569 1053.50188 NaN NaN NaN NaN NaN NaN NaN 17.144 1 14.557 14.057 15.057 -2.5866 0 0 0 0.84564 1 8939 8939 1.0715 0 1 + 47757 29906 32175 32918 55721 55721 -0.022733584048410194 PTFEEPKF 8 Unmodified _PTFEEPKF_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7478637695312 2 497.74765 993.480748 0.32359 0.00016107 -0.5356 -0.00026659 -0.212 -0.00010552 497.74760560078863 67.135 0.27691 66.652 66.46 66.737 -0.48218 14 12 2 0 0 0 0.64853 1 36650 36650 21.747 3.6117 1 955140 + 47758 21419 32176 32919 55722 55722 -0.016253237137220822 PTFGWLAPFLS 11 Unmodified _PTFGWLAPFLS_ 0 0 0 ENST00000531569.1_1_11:35936821-35939650:-|nuORF ENST00000531569.1_1_11:35936821-35939650:-|nuORF ENST00000531569.1_1_11:35936821-35939650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5538940429688 3 412.553492 1234.63865 0.43682 0.00018021 0.24381 0.00010058 0.68063 0.0002808 412.55386503308387 24.184 0.47293 21.356 21.142 21.614 -2.8273 52 25 3 0 0 0 0.48615 1 13093 13093 9.7643 0.52048 1 18837000 47759 14910 32177 32920 55723 55723 0.030711755455058665 PTFLDGLMDQ 10 Unmodified _PTFLDGLMDQ_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7684936523438 2 568.768257 1135.52196 0.62184 0.00035368 1.8217 0.0010361 2.4436 0.0013898 568.7693925971018 88.817 0.23322 88.312 88.205 88.438 -0.50423 14 9 2 0 0 0 0.65773 1 48602 48602 7.609 1.4032 1 407870 + 47760 29680 32178 32921 55724 55724 -0.04037930736558337 PTFLFPIAYCM 11 Unmodified _PTFLFPIAYCM_ 0 0 0 ENST00000369466.8_1_1:117602942-117605049:+|nuORF ENST00000369466.8_1_1:117602942-117605049:+|nuORF ENST00000369466.8_1_1:117602942-117605049:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8833923339844 3 434.880222 1301.61884 NaN NaN NaN NaN NaN NaN NaN 106.28 1 106.19 105.69 106.69 -0.088829 0 0 0 0.94307 1 57771 57771 0.08335 0.010087 1 47761 12307 32179 32922 55725 55725 -0.019906597811313986 PTFMNEKW 8 Unmodified _PTFMNEKW_ 0 0 0 REV__ENSG00000203952|ENST00000695460|CCDC160 REV__ENSG00000203952|ENST00000695460|CCDC160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8346252441406 3 351.50051 1051.4797 -0.3886 -0.00013659 -0.28689 -0.00010084 -0.67549 -0.00023743 351.50030867321664 20.923 0.22866 20.923 20.799 21.028 0 64 44 2 0 0 0 0.80232 1 10512 10512 3.5965 0 1 2747500 + 47762 24129 32180 32923 55726 55726 -0.04397861354277666 PTFWPLFR 8 Unmodified _PTFWPLFR_ 0 0 0 ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515344.1_1_6:43171139-43171751:+|nuORF ENST00000515773.5_1_6:43164260-43192180:+|nuORF ENST00000515773.5_1_6:43164260-43192180:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2896728515625 2 532.28982 1062.56509 NaN NaN NaN NaN NaN NaN NaN 85.877 1 85.877 85.377 86.377 0 0 0 0 0.97444 1 47579 47579 0.69038 0 1 47763 2907 32181 32924 55727 55727 0.03630671893711224 PTGAISQY 8 Unmodified _PTGAISQY_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4141235351562 1 836.414859 835.407583 -0.085507 -7.152E-05 0.030261 2.5311E-05 -0.055246 -4.6209E-05 836.4147358612378 40.095 0.24009 40.095 39.952 40.192 0 16 11 2 0 0 0 0.13832 1 21513 21513 89.427 29.037 1 2228800 47764 10130 32182 32925 55728 55728 -0.01670452436337655 PTGARRLA 8 Unmodified _PTGARRLA_ 0 0 0 REV__ENST00000474837.5_1_3:53077257-53080594:-|nuORF REV__ENST00000474837.5_1_3:53077257-53080594:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.161865234375 2 421.253769 840.492984 0.45251 0.00019062 0.50287 0.00021184 0.95538 0.00040246 421.2536677473133 71.072 0.20151 70.595 70.434 70.636 -0.47736 9 8 2 0 0 0 8.7369 1 38808 38808 14.582 0 1 415590 + 47765 25452 32183 32926 55729 55729 0.06635757539993392 PTGDQRISQ 9 Unmodified _PTGDQRISQ_ 0 0 0 ENST00000475240.5_1_14:74762540-74766908:-|nuORF;ENST00000554453.5_1_14:74759931-74766908:-|nuORF ENST00000475240.5_1_14:74762540-74766908:-|nuORF ENST00000475240.5_1_14:74762540-74766908:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2534790039062 2 501.254163 1000.49377 -0.19024 -9.5358E-05 -1.7391 -0.00087172 -1.9293 -0.00096708 501.25385387260377 29.739 0.28345 29.739 29.584 29.867 0 38 17 3 0 0 0 0.07087 1 15424 15424 39.95 10.868 1 10871000 47766 13957 32184 32927 55730 55730 -0.006454926015976525 PTGEFTLPA 9 Unmodified _PTGEFTLPA_ 0 0 0 REV__ENST00000366810.5_1_1:226413550-226413685:+|nuORF REV__ENST00000366810.5_1_1:226413550-226413685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4740600585938 1 932.472374 931.465098 -0.11164 -0.0001041 -0.45599 -0.0004252 -0.56763 -0.0005293 932.4719393710463 41.533 0.40726 41.533 41.344 41.751 0 48 20 3 0 0 0 0.30562 1 22384 22384 16.942 0 1 23763000 + 47767 25965 32185 32928 55731 55731 -0.0033761023076976926 PTGGLGAGAF 10 Unmodified _PTGGLGAGAF_ 0 0 0 REV__nc|ENSG00000119715|O95718|ESRRB REV__nc|ENSG00000119715|O95718|ESRRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7202453613281 2 424.21906 846.423567 -0.10323 -4.3792E-05 -0.44628 -0.00018932 -0.54951 -0.00023311 424.21881591408646 44.049 0.27484 44.049 43.99 44.265 0 21 14 2 0 0 0 0.063761 1 23956 23956 54.774 7.0249 1 12283000 + 47768 19207 32186 32929 55732 55732 -0.005787461994259502 PTGGLGAGAF 10 Unmodified _PTGGLGAGAF_ 0 0 0 REV__nc|ENSG00000119715|O95718|ESRRB REV__nc|ENSG00000119715|O95718|ESRRB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 424.21906 846.423567 -0.10323 -4.3792E-05 -0.44628 -0.00018932 -0.54951 -0.00023311 424.21881591408646 44.049 0.27484 44.049 43.99 44.265 0 0 0 NaN 54.774 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 12283000 + 47769 19207 32186 32929 -0.005787461994259502 PTGGYTHHHL 10 Unmodified _PTGGYTHHHL_ 0 0 0 REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2710571289062 2 560.270147 1118.52574 0.21512 0.00012053 1.8661 0.0010455 2.0812 0.0011661 560.2712137999439 70.045 0.37534 69.566 69.401 69.777 -0.47903 39 20 2 0 0 0 0.42068 2 38249 38249;38363 20.454 2.3073 1 4520500 + 47770 26616 32187 32930 55733;55734 55733 -0.028780801278116996 PTGGYTHHHL 10 Unmodified _PTGGYTHHHL_ 0 0 0 REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2703247070312 2 560.270147 1118.52574 0.66679 0.00037358 0.50121 0.00028081 1.168 0.0006544 560.2700611982281 76.494 0.4885 70.318 70.093 70.581 -6.1757 39 26 2 0 0 0 0.42068 1 50046 50046 20.454 0 1 23496000 + 47771 26616 32187 32930 55735 55735 -0.028780801278116996 PTGGYTHHHL 10 Unmodified _PTGGYTHHHL_ 0 0 0 REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF REV__ENST00000402558.6_1_9:34255969-34256053:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.270147 1118.52574 0.21512 0.00012053 1.8661 0.0010455 2.0812 0.0011661 560.2712137999439 70.045 0.37534 69.566 69.401 69.777 -0.47903 0.029102 -0.00026127 NaN 20.454 39 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4520500 + 47772 26616 32187 32930 -0.028780801278116996 PTGIVSSD 8 Unmodified _PTGIVSSD_ 0 0 0 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 REV__nc|ENSG00000111271|Q6JQN1-2|ACAD10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1963806152344 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 27.149 1 27.149 26.649 27.649 0 0 0 0 0.97444 1 13980 13980 2.3027 0 1 + 47773 18744 32188 32931 55736 55736 -0.020264451902789915 PTGMIRIHQ 9 Unmodified _PTGMIRIHQ_ 0 0 0 nc|ENSG00000114013|P42081-6|CD86;nc|ENSG00000114013|P42081-3|CD86;ENSG00000114013|ENST00000330540|CD86;nc|ENSG00000114013|P42081-4|CD86 nc|ENSG00000114013|P42081-6|CD86 nc|ENSG00000114013|P42081-6|CD86 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7847900390625 2 526.787118 1051.55968 -0.061175 -3.2226E-05 -2.743 -0.001445 -2.8042 -0.0014772 526.7858114755024 29.948 0.22342 29.978 29.868 30.091 0.030104 17 8 3 0 0 0 0.14594 1 15650 15650 30.637 4.3684 1 2191000 47774 3012 32189 32932 55737 55737 0.035966250395631505 PTGPTELHA 9 Unmodified _PTGPTELHA_ 0 0 0 REV__ENST00000518143.1_1_8:77528581-77585127:-|nuORF REV__ENST00000518143.1_1_8:77528581-77585127:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4613647460938 1 922.462872 921.455596 0.25202 0.00023248 -1.9465 -0.0017956 -1.6945 -0.0015631 922.4611029098403 39.535 0.37747 39.535 39.362 39.74 0 30 17 2 0 0 0 0.095405 1 21264 21264 34.102 1.797 1 4841300 + 47775 28241 32190 32933 55738 55738 -0.008273785162828062 PTGSDGCC 8 Unmodified _PTGSDGCC_ 0 0 0 REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2117614746094 2 370.122914 738.231275 NaN NaN NaN NaN NaN NaN NaN 18.984 1 18.99 18.49 19.49 0.0060463 0 0 0 0.97444 1 9642 9642 0.79363 0 1 + 47776 25221 32191 32934 55739 55739 -0.14831152933425074 PTGSDGCC 8 Unmodified _PTGSDGCC_ 0 0 0 REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.7255249023438 2 370.122914 738.231275 NaN NaN NaN NaN NaN NaN NaN 3.6736 1 1.1916 0.69162 1.6916 -2.482 0 0 0 0.97444 1 1865 1865 0.79363 0 1 + 47777 25221 32191 32934 55740 55740 -0.14831152933425074 PTGSDGCC 8 Unmodified _PTGSDGCC_ 0 0 0 REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF REV__ENST00000285968.10_1_7:135279332-135279398:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.8731079101562 2 370.122914 738.231275 NaN NaN NaN NaN NaN NaN NaN 11.238 1 8.7563 8.2563 9.2563 -2.482 0 0 0 0.97444 1 5656 5656 0.79363 0 1 + 47778 25221 32191 32934 55741 55741 -0.14831152933425074 PTHDSEVMREW 11 Unmodified _PTHDSEVMREW_ 0 0 0 ENSG00000131711|ENST00000296755|MAP1B ENSG00000131711|ENST00000296755|MAP1B ENSG00000131711|ENST00000296755|MAP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.87548828125 3 462.875076 1385.6034 0.25704 0.00011898 0.44008 0.0002037 0.69711 0.00032268 462.8752656151752 16.882 0.23484 14.325 14.193 14.428 -2.557 83 37 3 0 0 0 0.71341 1 8772 8772 0.40827 0 1 9861200 47779 4342 32192 32935 55742 55742 -0.07397855044609969 PTHDTQLQF 9 Unmodified _PTHDTQLQF_ 0 0 0 REV__ENSG00000101158|ENST00000652272|NELFCD REV__ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7640991210938 2 543.764363 1085.51417 0.60377 0.00032831 -0.96762 -0.00052616 -0.36385 -0.00019785 543.7638231768622 38.736 0.15187 38.736 38.66 38.811 0 9 6 2 0 0 0 0.28023 1 20734 20734 18.146 0.011366 1 1202000 + 47780 18136 32193 32936 55743 55743 -0.025163219418118388 PTHEQWVM 8 Unmodified _PTHEQWVM_ 0 0 0 REV__nc|ENSG00000110786|P54829-2|PTPN5 REV__nc|ENSG00000110786|P54829-2|PTPN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.264892578125 2 514.236927 1026.4593 0.22375 0.00011506 0.46496 0.0002391 0.68872 0.00035416 514.2370213378385 77.941 0.3791 77.941 77.771 78.15 0 21 16 2 0 0 0 8.7369 1 43414 43414 0.69038 0.088878 1 559340 + 47781 18722 32194 32937 55744 55744 -0.05287032014075521 PTHHPRVY 8 Unmodified _PTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7644958496094 2 503.764501 1005.51445 -1.0061 -0.00050682 1.0903 0.00054928 0.084286 4.246E-05 503.76515629833557 17.627 0.10285 17.641 17.601 17.704 0.013865 34 19 2 0 0 0 0.58902 1 8772 8772 26.884 17.501 1 1026000 47782 7233 32195 32938 55745 55745 0.011911425687117116 PTHHPRVY 8 Unmodified _PTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7637939453125 2 503.764501 1005.51445 0.91041 0.00045863 0.11882 5.9857E-05 1.0292 0.00051849 503.7646429795859 19.041 0.30167 16.42 16.242 16.543 -2.6215 32 19 2 0 0 0 0.44629 2 10101 9998;10101 39.957 19.504 1 6239800 47783 7233 32195 32938 55746;55747 55747 0.011911425687117116 PTHHPRVY 8 Unmodified _PTHHPRVY_ 0 0 0 ENST00000474291.1_1_7:97911152-97911766:+|nuORF;ENST00000473967.1_1_7:97911152-97912144:+|nuORF;nc|ENSG00000164713|O95415-2|BRI3;ENST00000456357.6_1_7:97881701-97920552:+|nuORF;ENSG00000164713|ENST00000297290|BRI3 ENST00000474291.1_1_7:97911152-97911766:+|nuORF ENST00000474291.1_1_7:97911152-97911766:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.764501 1005.51445 0.11737 5.9126E-05 0.49363 0.00024867 0.611 0.0003078 503.76467403561713 17.597 0.059032 17.602 17.562 17.621 0.0050564 -0.019598 -0.00048078 NaN 26.884 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 337200 47784 7233 32195 32938 0.011911425687117116 PTHLGAAGKF 10 Unmodified _PTHLGAAGKF_ 0 0 0 REV__ENSG00000131697|ENST00000378156|NPHP4 REV__ENSG00000131697|ENST00000378156|NPHP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2804565429688 2 499.774534 997.534515 0.26697 0.00013343 0.10157 5.0763E-05 0.36854 0.00018419 499.77421857458677 63.833 0.66176 63.348 62.993 63.654 -0.48512 92 33 4 0 0 0 0.44373 1 34707 34707 19.257 2.3147 1 46038000 + 47785 19805 32196 32939 55748 55748 0.03564893508666955 PTIGVLKD 8 Unmodified _PTIGVLKD_ 0 0 0 REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.5000610351562 1 842.498195 841.490919 -0.018231 -1.536E-05 0.23479 0.00019781 0.21656 0.00018245 842.4983594668795 62.94 0.29613 62.94 62.8 63.096 0 20 12 2 0 0 0 0.61462 2 35080 35080;35179 24.674 11.166 1 909240 + 47786 21354 32197 32940 55749;55750 55749 0.06383284011519663 PTIGVLKD 8 Unmodified _PTIGVLKD_ 0 0 0 REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 842.5006103515625 1 842.498195 841.490919 -0.19278 -0.00016242 1.5374 0.0012953 1.3446 0.0011328 842.4999176089967 63.361 0.21933 62.875 62.75 62.969 -0.48617 17 9 2 0 0 0 0.61462 1 34516 34516 24.674 2.9272 1 1217100 + 47787 21354 32197 32940 55751 55751 0.06383284011519663 PTIGVLKD 8 Unmodified _PTIGVLKD_ 0 0 0 REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 842.498195 841.490919 -0.018231 -1.536E-05 0.23479 0.00019781 0.21656 0.00018245 842.4983594668795 62.94 0.29613 62.94 62.8 63.096 0 0.03264 -0.00033302 NaN 24.674 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 909240 + 47788 21354 32197 32940 0.06383284011519663 PTIGVLKD 8 Unmodified _PTIGVLKD_ 0 0 0 REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 842.498195 841.490919 -0.19278 -0.00016242 1.5374 0.0012953 1.3446 0.0011328 842.4999176089967 63.361 0.21933 62.875 62.75 62.969 -0.48617 -0.03264 0.00076442 NaN 24.674 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1217100 + 47789 21354 32197 32940 0.06383284011519663 PTIHQSANPY 10 Unmodified _PTIHQSANPY_ 0 0 0 REV__ENSG00000137573|ENST00000402687|SULF1 REV__ENSG00000137573|ENST00000402687|SULF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.279541015625 2 564.277638 1126.54072 0.83284 0.00046995 0.28974 0.00016349 1.1226 0.00063344 564.277885558912 82.074 0.25523 81.578 81.443 81.698 -0.4952 15 9 2 0 0 0 0.66569 1 44931 44931 6.7232 0 1 792040 + 47790 20251 32198 32941 55752 55752 -0.017486330504880243 PTIMTRRLC 9 Unmodified _PTIMTRRLC_ 0 0 0 ENSG00000196832|ENST00000641879|OR11G2;nc|ENSG00000196832|Q8NGC1|OR11G2 ENSG00000196832|ENST00000641879|OR11G2 ENSG00000196832|ENST00000641879|OR11G2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2616577148438 2 545.796629 1089.5787 0.33502 0.00018285 1.1135 0.00060775 1.4485 0.0007906 545.7974694976429 52.463 0.34597 52.029 51.891 52.237 -0.43367 43 17 4 0 0 0 0.20727 1 28275 28275 7.9102 1.5561 1 35551000 47791 9874 32199 32942 55753 55753 0.0374983833899023 PTITSTSYSFG 11 Unmodified _PTITSTSYSFG_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7761840820312 2 580.777136 1159.53972 -0.19593 -0.00011379 0.44223 0.00025684 0.2463 0.00014305 580.7774941809273 60.863 0.62704 60.373 59.99 60.617 -0.48932 64 30 3 0 0 0 0.63851 1 33046 33046 9.3831 2.66 1 8855100 47792 3194 32200 32943 55754 55754 -0.03366892210055994 PTITSTSYSFG 11 Unmodified _PTITSTSYSFG_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.7802734375 2 580.777136 1159.53972 0.7599 0.00044133 1.7221 0.0010002 2.482 0.0014415 580.7785265711574 60.5 0.36458 60.457 60.249 60.613 -0.043507 26 17 2 0 0 0 0.63851 1 33078 33078 9.3831 2.66 1 5083300 47793 3194 32200 32943 55755 55755 -0.03366892210055994 PTIVASFSV 9 Unmodified _PTIVASFSV_ 0 0 0 REV__ENSG00000170683|ENST00000642047|OR10A3 REV__ENSG00000170683|ENST00000642047|OR10A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 921.5128173828125 1 920.50876 919.501483 0.61 0.00056151 0.98283 0.0009047 1.5928 0.0014662 920.5100243565748 69.511 0.43521 63.335 63.071 63.506 -6.1757 44 22 3 0 0 0 0.14602 1 45496 45496 28.487 0 1 51459000 + 47794 22503 32201 32944 55756 55756 0.03851266665958519 PTKAMCVFWK 10 Unmodified _PTKAMCVFWK_ 0 0 0 REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF REV__ENST00000517617.1_1_8:68864752-69023167:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.810302734375 2 605.809205 1209.60386 NaN NaN NaN NaN NaN NaN NaN 29.743 1 29.743 29.243 30.243 0 0 0 0 0.7417 1 15418 15418 14.838 3.3436 1 + 47795 17220 32202 32945 55757 55757 0.007438931415435945 PTKCPVERY 9 Unmodified _PTKCPVERY_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MSMS AL20221201_MKP_PDAC_01 4 546.7802734375 2 546.778959 1091.54336 NaN NaN NaN NaN NaN NaN NaN 21.098 1 18.405 17.905 18.905 -2.693 0 0 0 0.76439 1 11269 11269 7.2892 0.56607 1 + 47796 21382 32203 32946 55758 55758 0.0012549908283290279 PTKDCSPDDL 10 Unmodified _PTKDCSPDDL_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.8303833007812 3 364.162223 1089.46484 1.308 0.00047634 1.1104 0.00040436 2.4184 0.00088069 364.4965099708729 85.693 0.38483 79.517 79.361 79.746 -6.1757 42 21 3 0 0 0 0.23634 1 56440 56440 1.7423 0 1 19582000 + 47797 21505 32204 32947 55759 55759 -0.07631398012927093 PTKDPVIL 8 Unmodified _PTKDPVIL_ 0 0 0 nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L nc|ENSG00000103544|Q7Z3J2-2|VPS35L nc|ENSG00000103544|Q7Z3J2-2|VPS35L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7702331542969 2 441.768386 881.522219 0.56888 0.00025131 1.8197 0.00080388 2.3886 0.0010552 441.7689864680105 69.764 0.44595 69.795 69.573 70.019 0.030914 33 22 2 0 0 0 0.80722 1 38335 38335 2.3027 0 1 3196500 47798 16098 32205 32948 55760 55760 0.07671857045625075 PTKETIEQEKR 11 Unmodified _PTKETIEQEKR_ 0 0 0 ENSG00000034510|ENST00000233143|TMSB10 ENSG00000034510|ENST00000233143|TMSB10 ENSG00000034510|ENST00000233143|TMSB10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 453.2468872070312 3 453.580658 1357.72014 0.32041 0.00014533 1.0899 0.00049434 1.4103 0.00063968 453.58126762515263 23.902 0.30093 21.075 20.948 21.248 -2.8273 24 17 2 0 0 0 0.24623 1 12940 12940 26.644 19.609 1 3280100 47799 605 32206 32949 55761 55761 0.05559206446787357 PTKFPRPCF 9 Unmodified _PTKFPRPCF_ 0 0 0 REV__FAM47A|p.E307K|1|0.15|ENSG00000185448|chrX:34131360-34131360|C/T|missense_variant REV__FAM47A|p.E307K|1|0.15|ENSG00000185448|chrX:34131360-34131360|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 364.8611755371094 3 364.86015 1091.55862 NaN NaN NaN NaN NaN NaN NaN 15.647 1 13.12 12.62 13.62 -2.5273 0 0 0 0.82396 1 8048 8048 2.7352 0 1 + 47800 29342 32207 32950 55762 55762 0.016504106706634047 PTKKAKVLHK 10 Unmodified _PTKKAKVLHK_ 0 0 0 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41601366-41613299:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3779907226562 2 575.376958 1148.73936 1.6293 0.00093748 -0.93034 -0.0005353 0.699 0.00040219 575.3768716331915 106.4 1.1421 100.23 99.784 100.93 -6.1757 344 195 3 0 0 0 0.71276 1 71513 71513 1.4819 1.0236 1 9179300 47801 1814 32208 32951 55763 55763 0.17094252319020597 PTKKLPIIRQ 10 Unmodified _PTKKLPIIRQ_ 0 0 0 REV__nc|ENSG00000197566|Q9P2J8-2|ZNF624 REV__nc|ENSG00000197566|Q9P2J8-2|ZNF624 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3905639648438 2 597.390065 1192.76558 1.08 0.00064521 -0.151 -9.0207E-05 0.92905 0.000555 597.3899434021429 106.07 1.4159 99.897 99.603 101.02 -6.1757 500 236 3 0 0 0 0.71276 3 70997 70997;71108;71323 1.4819 0.28856 1 14298000 + 47802 23938 32209 32952 55764;55765;55766 55764 0.17690521490499123 PTKKPCSLIPR 11 Unmodified _PTKKPCSLIPR_ 0 0 0 ENST00000584580.1_1_17:45912634-45914483:+|nuORF;ENSG00000141294|ENST00000269025|LRRC46 ENST00000584580.1_1_17:45912634-45914483:+|nuORF ENST00000584580.1_1_17:45912634-45914483:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5450134277344 3 413.912914 1238.71691 0.037439 1.5496E-05 -2.7028 -0.0011187 -2.6653 -0.0011032 413.91168361042514 41.034 0.20477 41.032 40.931 41.136 -0.0017891 14 9 2 0 0 0 0.30445 1 21933 21933 4.4062 1.0865 1 1301000 47803 15598 32210 32953 55767 55767 0.10710284859101193 PTKKSRPRKIP 11 Unmodified _PTKKSRPRKIP_ 0 0 0 PXDN|p.T1351S|1|0.04|ENSG00000130508|chr2:1639324-1639324|T/A|missense_variant PXDN|p.T1351S|1|0.04|ENSG00000130508|chr2:1639324-1639324|T/A|missense_variant PXDN|p.T1351S|1|0.04|ENSG00000130508|chr2:1639324-1639324|T/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.6148071289062 3 436.613856 1306.81974 1.6967 0.00074081 0.65545 0.00028618 2.3522 0.001027 436.6140116002286 105.04 0.16784 98.867 98.773 98.941 -6.1757 53 17 4 0 0 0 0.7326 1 70295 70295 0.40827 0 1 369660000 47804 16696 32211 32954 55768 55768 0.17860113642086617 PTKLELTFSY 10 Unmodified _PTKLELTFSY_ 0 0 0 nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3201904296875 2 599.821347 1197.62814 0.5172 0.00031023 -2.1017 -0.0012606 -1.5845 -0.00095041 599.8199801575561 40.376 0.31665 40.078 39.882 40.199 -0.29716 25 14 2 0 0 0 0.22489 1 21278 21278 18.146 10.857 1 2275100 47805 1282 32212 32955 55769 55769 0.037231481004027955 PTKLKTTKIVY 11 Unmodified _PTKLKTTKIVY_ 0 0 0 REV__ENST00000474983.5_1_6:10529144-10530083:+|nuORF REV__ENST00000474983.5_1_6:10529144-10530083:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.4052734375 2 646.402838 1290.79112 1.4664 0.00094786 -0.45038 -0.00029113 1.016 0.00065673 646.4024284532379 105.71 0.54469 99.531 99.359 99.904 -6.1757 144 61 3 0 0 0 0.7326 1 70764 70764 1.1933 0.79263 1 15970000 + 47806 18772 32213 32956 55770 55770 0.1573595122226834 PTKQLYPGPE 10 Unmodified _PTKQLYPGPE_ 0 0 0 ENST00000464187.1_1_9:137545303-137583524:+|nuORF ENST00000464187.1_1_9:137545303-137583524:+|nuORF ENST00000464187.1_1_9:137545303-137583524:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.759521484375 2 565.298039 1128.58152 0.72744 0.00041122 -0.016113 -9.1089E-06 0.71133 0.00040211 565.2982514195318 60.396 0.40031 60.396 60.158 60.559 0 40 17 3 0 0 0 0.23325 1 33593 33593 10.074 0 1 3445400 47807 13711 32214 32957 55771 55771 0.02237708269126415 PTLAGRHVPL 10 Unmodified _PTLAGRHVPL_ 0 0 0 nc|ENSG00000196243|Q96LM1|LINC00615 nc|ENSG00000196243|Q96LM1|LINC00615 nc|ENSG00000196243|Q96LM1|LINC00615 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2689819335938 2 530.816733 1059.61891 0.24854 0.00013193 -0.39753 -0.00021102 -0.14899 -7.9088E-05 530.8169040389711 46.11 0.1749 45.774 45.686 45.86 -0.33664 12 8 2 0 0 0 0.22811 1 24711 24711 10.074 2.1638 1 3725700 47808 16477 32215 32958 55772 55772 0.091488443254093 PTLARNVP 8 Unmodified _PTLARNVP_ 0 0 0 REV__ENSG00000138134|ENST00000371926|STAMBPL1 REV__ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7797546386719 2 434.255977 866.497401 1.0916 0.00047402 0.51244 0.00022253 1.604 0.00069655 434.25604641579395 32.184 0.3157 28.328 28.147 28.463 -3.8562 23 18 2 0 0 0 8.7369 1 18264 18264 32.305 10.559 1 14596000 + 47809 20308 32216 32959 55773 55773 0.05881221962897598 PTLARTEAKIT 11 Unmodified _PTLARTEAKIT_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.9036560058594 3 400.903072 1199.68739 1.0809 0.00043334 0.72463 0.00029051 1.8056 0.00072385 400.9034602464056 57.66 0.36342 51.633 51.39 51.753 -6.0275 28 19 2 0 0 0 0.35659 1 36786 36786 19.615 3.3408 1 26104000 47810 9866 32217 32960 55774 55774 0.09553044114591103 PTLCRPRSF 9 Unmodified _PTLCRPRSF_ 0 0 0 ENST00000525088.5_1_11:67196016-67196232:+|nuORF ENST00000525088.5_1_11:67196016-67196232:+|nuORF ENST00000525088.5_1_11:67196016-67196232:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.5823974609375 2 538.787118 1075.55968 0.30749 0.00016567 -3.9214 -0.0021128 -3.6139 -0.0019471 538.784628036377 70.925 0.21839 70.448 70.35 70.568 -0.47735 15 9 2 0 0 0 0.18118 1 38833 38833 18.135 2.2878 1 804180 47811 14790 32218 32961 55775 55775 0.024926250395765237 PTLGEDDDL 9 Unmodified _PTLGEDDDL_ 0 0 0 ENST00000377658.8_1_1:6653013-6653397:-|nuORF ENST00000377658.8_1_1:6653013-6653397:-|nuORF ENST00000377658.8_1_1:6653013-6653397:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7200927734375 2 487.719287 973.424021 0.69529 0.00033911 -0.46774 -0.00022813 0.22755 0.00011098 487.71942709625694 42.997 0.83469 42.997 42.488 43.323 0 114 42 4 0 0 0 0.2143 1 23167 23167 21.747 4.8044 1 45411000 47812 12523 32219 32962 55776 55776 -0.06375416060905081 PTLHGDEHL 9 Unmodified _PTLHGDEHL_ 0 0 0 ENSG00000204424|ENST00000375832|LY6G6F;nc|ENSG00000204424|Q5SQ64-2|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F ENSG00000204424|ENST00000375832|LY6G6F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7510070800781 2 509.751256 1017.48796 -0.084863 -4.3259E-05 -0.83613 -0.00042622 -0.92099 -0.00046948 509.7507735621883 65.48 0.33449 64.996 64.835 65.169 -0.48428 26 15 2 0 0 0 0.39863 1 35827 35827 12.532 0 1 3485100 47813 10282 32220 32963 55777 55777 -0.020085911132923684 PTLLGTKYI 9 Unmodified _PTLLGTKYI_ 0 0 0 ENST00000216181.9_1_22:36677912-36678251:-|nuORF ENST00000216181.9_1_22:36677912-36678251:-|nuORF ENST00000216181.9_1_22:36677912-36678251:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.30322265625 2 503.302593 1004.59063 1.3492 0.00067905 0.37166 0.00018706 1.7209 0.00086611 503.3032737736235 62.926 0.61689 56.75 56.526 57.143 -6.1757 61 32 3 0 0 0 0.10734 1 40555 40555 32.305 1.0371 1 55311000 47814 11004 32221 32964 55778 55778 0.08852101625473097 PTLPLALA 8 Unmodified _PTLPLALA_ 0 0 0 REV__ENST00000590067.5_1_19:3053819-3055997:-|nuORF REV__ENST00000590067.5_1_19:3053819-3055997:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2505798339844 2 398.252372 794.49019 NaN NaN NaN NaN NaN NaN NaN 89.812 1 89.311 88.811 89.811 -0.50171 0 0 0 0.97444 1 49099 49099 0 0 1 + 47815 29145 32222 32965 55779 55779 0.08472489362441138 PTLQAEVLY 9 Unmodified _PTLQAEVLY_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2826538085938 2 517.281857 1032.54916 0.30191 0.00015617 -2.2102 -0.0011433 -1.9083 -0.00098711 517.2819446281919 77.591 0.70563 77.591 77.538 78.244 0 55 35 3 0 0 0 0.56345 1 43315 43315 3.5965 0 1 1057700 + 47816 24020 32223 32966 55780 55780 0.03418920866147346 PTLQEVILANL 11 Unmodified _PTLQEVILANL_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.85546875 2 605.855721 1209.69689 -0.33589 -0.0002035 0.18351 0.00011118 -0.15238 -9.2322E-05 605.8558179243422 78.443 0.43416 77.957 77.705 78.139 -0.48596 67 19 4 0 0 0 0.39848 2 42978 42874;42978 21.59 8.5477 1 24346000 47817 8860 32224 32967 55781;55782 55782 0.10042812400138246 PTLQEVILANL 11 Unmodified _PTLQEVILANL_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8546752929688 2 605.855721 1209.69689 0.23247 0.00014084 -0.87026 -0.00052725 -0.6378 -0.00038641 605.8551696943846 77.877 0.33229 77.929 77.777 78.109 0.052452 30 13 3 0 0 0 0.14665 1 42973 42973 37.075 7.9931 1 8050200 47818 8860 32224 32967 55783 55783 0.10042812400138246 PTLQEVILANL 11 Unmodified _PTLQEVILANL_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8560180664062 2 605.855721 1209.69689 0.7618 0.00046154 -0.064049 -3.8805E-05 0.69775 0.00042274 605.8557609148901 86.126 0.57757 79.95 79.635 80.213 -6.1757 93 29 4 0 0 0 0.047603 3 56637 56637;56771;56897 51.415 29.825 1 154060000 47819 8860 32224 32967 55784;55785;55786 55784 0.10042812400138246 PTLYIVERPL 10 Unmodified _PTLYIVERPL_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 400.9034118652344 3 400.904413 1199.69141 NaN NaN NaN NaN NaN NaN NaN 58.466 1 52.392 51.892 52.892 -6.0745 0 0 0 0.71157 1 37464 37464 10.315 0.55098 1 47820 8688 32225 32968 55787 55787 0.0995513360833229 PTMAPAPELL 10 Unmodified _PTMAPAPELL_ 0 0 0 nc|ENSG00000132003|Q9H7M6|ZSWIM4 nc|ENSG00000132003|Q9H7M6|ZSWIM4 nc|ENSG00000132003|Q9H7M6|ZSWIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.281982421875 2 520.27826 1038.54197 0.70831 0.00036852 2.7435 0.0014274 3.4518 0.0017959 520.2798686760923 67.749 0.95276 61.573 61.13 62.083 -6.1757 70 54 2 0 0 0 0.2178 1 44160 44160 32.305 0 1 52868000 47821 16192 32226 32969 55788 55788 0.024238649940798496 PTMCIPKVDY 10 Unmodified _PTMCIPKVDY_ 0 0 0 ENSG00000101349|ENST00000353224|PAK5 ENSG00000101349|ENST00000353224|PAK5 ENSG00000101349|ENST00000353224|PAK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7877197265625 2 583.782853 1165.55115 NaN NaN NaN NaN NaN NaN NaN 31.211 1 31.211 30.711 31.711 0 0 0 0 0.19159 1 16248 16248 43.772 9.3707 1 47822 1952 32227 32970 55789 55789 -0.0250010971192296 PTMFKLAEL 9 Unmodified _PTMFKLAEL_ 0 0 0 ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9 ENST00000471613.1_1_1:161068499-161069114:+|nuORF ENST00000471613.1_1_1:161068499-161069114:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.1959838867188 3 350.528178 1048.5627 NaN NaN NaN NaN NaN NaN NaN 18.566 1 15.944 15.444 16.444 -2.6215 0 0 0 0.7453 1 9788 9788 4.897 0 1 47823 13881 32228 32971 55790 55790 0.04036455373739045 PTMKVGVEKH 10 Unmodified _PTMKVGVEKH_ 0 0 0 REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF REV__ENST00000422851.1_1_22:40915488-40929660:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.8761291503906 3 375.874348 1124.60121 NaN NaN NaN NaN NaN NaN NaN 47.25 1 42.169 41.669 42.669 -5.0805 0 0 0 0.80141 1 29307 29307 7.4771 0 1 + 47824 26863 32229 32972 55791 55791 0.04389761008246751 PTMLAGTSVK 10 Unmodified _PTMLAGTSVK_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MSMS AL20221201_MKP_PDAC_01 4 502.7744140625 2 502.775885 1003.53722 NaN NaN NaN NaN NaN NaN NaN 40.002 1 35.472 34.972 35.972 -4.5294 0 0 0 0.64375 1 23825 23825 19.257 2.1441 1 + 47825 18194 32230 32973 55792 55792 0.0355898085130093 PTMRSITPLDY 11 Unmodified _PTMRSITPLDY_ 0 0 0 REV__ENSG00000167971|ENST00000343516|CASKIN1 REV__ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3294067382812 2 647.329013 1292.64347 0.87906 0.00056904 -0.21812 -0.0001412 0.66094 0.00042784 647.3289873855755 55.646 0.53449 49.725 49.49 50.024 -5.9211 97 31 4 0 0 0 0.46131 1 35436 35436 18.373 3.1246 1 136850000 + 47826 22268 32231 32974 55793 55793 0.008856916259674108 PTNESPTCL 9 Unmodified _PTNESPTCL_ 0 0 0 REV__nc|ENSG00000133958|Q9P2D8|UNC79 REV__nc|ENSG00000133958|Q9P2D8|UNC79 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2552490234375 2 481.2184 960.422247 0.63097 0.00030363 1.7788 0.000856 2.4098 0.0011596 481.2191064216389 47.481 0.28418 47.481 47.339 47.623 0 21 12 2 0 0 0 0.19298 1 25916 25916 4.756 0.81161 1 4216000 + 47827 19942 32232 32975 55794 55794 -0.059547483505070886 PTNFNFCYD 9 Unmodified _PTNFNFCYD_ 0 0 0 nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1522827148438 3 374.151658 1119.43315 0.97958 0.00036651 -0.072496 -2.7125E-05 0.90708 0.00033939 374.48599234800815 22.606 0.24846 19.828 19.651 19.899 -2.7784 19 14 2 0 0 0 0.59218 1 12146 12146 0.96228 0 1 3020600 47828 2075 32233 32976 55795 55795 -0.12179345976210243 PTNFNFCYD 9 Unmodified _PTNFNFCYD_ 0 0 0 nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.151658 1119.43315 -0.46351 -0.00017342 0.040676 1.5219E-05 -0.42283 -0.0001582 374.15166003884485 19.999 0.19305 19.999 19.888 20.081 0 0.085568 1.9497E-05 NaN 0.96228 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1533900 47829 2075 32233 32976 -0.12179345976210243 PTNGMVYFRAF 11 Unmodified _PTNGMVYFRAF_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826904296875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 54.132 1 54.132 53.632 54.632 0 0 0 0 0.93933 1 30038 30038 1.2148 0 1 47830 2536 32234 32977 55796 55796 -0.016068539630396117 PTNKPGQSYY 10 Unmodified _PTNKPGQSYY_ 0 0 0 ENST00000471981.1_1_1:168195317-168198926:+|nuORF ENST00000471981.1_1_1:168195317-168198926:+|nuORF ENST00000471981.1_1_1:168195317-168198926:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7791137695312 2 577.77747 1153.54039 0.76328 0.00044101 0.34452 0.00019906 1.1078 0.00064007 577.777546052135 73.358 0.25998 72.883 72.758 73.018 -0.47588 18 11 2 0 0 0 0.67033 1 40155 40155 6.2058 0 1 782460 47831 13890 32235 32978 55797 55797 -0.030240527703199405 PTNYSIKY 8 Unmodified _PTNYSIKY_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.252197265625 2 493.2531 984.491647 NaN NaN NaN NaN NaN NaN NaN 43.885 1 43.885 43.385 44.385 0 0 0 0 0.93587 1 23861 23861 13.508 6.2187 1 47832 4658 32236 32979 55798 55798 -0.0012192133942789951 PTPLPLLG 8 Unmodified _PTPLPLLG_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000106258|P20815-2|CYP3A5;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2490234375 2 404.252372 806.49019 -0.42737 -0.00017277 0.63517 0.00025677 0.2078 8.4003E-05 404.25166282481166 31.547 0.91701 31.577 30.97 31.887 0.030106 61 40 3 0 0 0 0.81107 1 16318 16318 0 0 1 12334000 47833 7633;2408 32237 32980 55799 55799 0.07920489362493299 PTPLPLLG 8 Unmodified _PTPLPLLG_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000106258|P20815-2|CYP3A5;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2532653808594 2 404.252372 806.49019 -0.45275 -0.00018303 2.6687 0.0010788 2.2159 0.0008958 404.2531620784071 36.526 0.40292 36.548 36.434 36.836 0.021545 22 18 2 0 0 0 0.81107 1 19370 19370 0 0 1 3495500 47834 7633;2408 32237 32980 55800 55800 0.07920489362493299 PTPLPLLG 8 Unmodified _PTPLPLLG_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1;nc|ENSG00000106258|P20815-2|CYP3A5;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000106258|ENST00000222982|CYP3A5 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 404.7082214355469 2 404.252372 806.49019 1.1686 0.00047241 2.3158 0.00093619 3.4844 0.0014086 404.25324217647926 35.684 0.27948 31.491 31.351 31.63 -4.1928 29 17 2 0 0 0 8.7369 1 20759 20759 0 0 1 6798700 47835 7633;2408 32237 32980 55801 55801 0.07920489362493299 PTPSMEVTP 9 Unmodified _PTPSMEVTP_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.75244140625 2 479.731143 957.447733 0.77363 0.00037114 0.18798 9.0178E-05 0.96161 0.00046131 479.7310963709583 56.602 0.52902 50.625 50.412 50.941 -5.9769 42 30 2 0 0 0 0.18521 1 36300 36300 7.2892 5.6366 1 38843000 47836 8954 32238 32981 55802 55802 -0.03269273828061614 PTPYRSGYR 9 Unmodified _PTPYRSGYR_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7817993164062 2 548.780348 1095.54614 NaN NaN NaN NaN NaN NaN NaN 28.831 1 28.769 28.269 29.269 -0.062159 0 0 0 0.20153 1 14894 14894 30.637 1.555 1 + 47837 17692 32239 32982 55803 55803 0.002190905319821468 PTQCFKAVGP 10 Unmodified _PTQCFKAVGP_ 0 0 0 REV__ENST00000515007.6_1_5:77784418-77784583:-|nuORF REV__ENST00000515007.6_1_5:77784418-77784583:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2742309570312 2 524.268227 1046.5219 1.1168 0.00058552 -0.27798 -0.00014574 0.83885 0.00043978 524.2677088519188 42.654 0.90055 37.97 37.544 38.444 -4.6846 198 58 5 0 0 0 0.56348 1 25558 25558 13.042 1.4022 1 509670000 + 47838 28203 32240 32983 55804 55804 0.000501140541246059 PTQDVISY 8 Unmodified _PTQDVISY_ 0 0 0 ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7293701171875 2 461.729458 921.444362 -0.031994 -1.4772E-05 0.22522 0.00010399 0.19322 8.9216E-05 461.72936359129426 34.89 0.28103 34.89 34.753 35.034 0 26 14 2 0 0 0 0.79669 1 18416 18416 8.5933 0 1 4035200 47839 15585 32241 32984 55805 55805 -0.01950200610428965 PTQEHSFHF 9 Unmodified _PTQEHSFHF_ 0 0 0 ENST00000523123.5_1_8:29647883-29648749:+|nuORF ENST00000523123.5_1_8:29647883-29648749:+|nuORF ENST00000523123.5_1_8:29647883-29648749:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7568969726562 2 565.256705 1128.49886 0.80634 0.00045579 -1.1177 -0.00063179 -0.31137 -0.00017601 565.2559125323249 64.204 0.24755 63.719 63.553 63.8 -0.48512 17 11 2 0 0 0 0.19298 1 34985 34985 13.508 2.684 1 811230 47840 14762 32242 32985 55806 55806 -0.06025188738999532 PTQGDMYHHK 10 Unmodified _PTQGDMYHHK_ 0 0 0 REV__ENST00000568636.5_1_16:722693-723603:+|nuORF REV__ENST00000568636.5_1_16:722693-723603:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.1849365234375 3 405.185474 1212.53459 0.36738 0.00014886 -0.56538 -0.00022909 -0.198 -8.0227E-05 405.185255201124 22.8 0.43051 20.021 19.857 20.287 -2.7784 76 30 3 0 0 0 0.66569 1 12362 12362 3.5871 1.6807 1 11831000 + 47841 20507 32243 32986 55807 55807 -0.06317474553657121 PTQHNLFAM 9 Unmodified _PTQHNLFAM_ 0 0 0 nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF nc|ENSG00000138798|P01133-2|EGF nc|ENSG00000138798|P01133-2|EGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7578125 2 529.758027 1057.5015 NaN NaN NaN NaN NaN NaN NaN 78.908 1 78.422 77.922 78.922 -0.48596 0 0 0 0.57317 1 43220 43220 13.508 2.3934 1 47842 5108 32244 32987 55808 55808 -0.02495056605721402 PTQIDLLQF 9 Unmodified _PTQIDLLQF_ 0 0 0 REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3 REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7949829101562 2 537.795132 1073.57571 NaN NaN NaN NaN NaN NaN NaN 90.624 1 90.624 90.124 91.124 0 0 0 0 0.82739 1 50134 50134 4.3292 0 1 + 47843 24311 32245 32988 55809 55809 0.04186609757448423 PTQLHDRMR 9 Unmodified _PTQLHDRMR_ 0 0 0 REV__ENST00000251810.7_1_8:103244498-103251179:-|nuORF REV__ENST00000251810.7_1_8:103244498-103251179:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.2986450195312 2 577.298381 1152.58221 NaN NaN NaN NaN NaN NaN NaN 53.913 1 48.047 47.547 48.547 -5.8653 0 0 0 0.39043 1 34134 34134 20.454 2.3073 1 + 47844 24888 32246 32989 55810 55810 0.012022244372019486 PTQNHRRPA 9 Unmodified _PTQNHRRPA_ 0 0 0 ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7290649414062 2 538.789038 1075.56352 0.048972 2.6386E-05 -1.8624 -0.0010034 -1.8134 -0.00097704 538.7882135424575 22.894 0.24693 20.116 20.058 20.305 -2.7784 21 14 2 0 0 0 0.17718 1 12420 12420 20.454 5.6154 1 6301500 47845 4936 32247 32990 55811 55811 0.028764308576455733 PTQNREKWIYY 11 Unmodified _PTQNREKWIYY_ 0 0 0 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 748.8775634765625 2 749.377883 1496.74121 4.1122 0.0030816 -2.4697 -0.0018507 1.6425 0.0012309 749.3757821727102 98.592 0.31437 98.564 98.432 98.746 -0.028282 16 11 2 0 0 0 0.30452 1 54752 54752 0 0 1 1848300 47846 5752 32248 32991 55812 55812 0.012712165463199199 PTQPAPFFF 9 Unmodified _PTQPAPFFF_ 0 0 0 ENST00000337198.9_1_8:103876093-103876378:-|nuORF ENST00000337198.9_1_8:103876093-103876378:-|nuORF ENST00000337198.9_1_8:103876093-103876378:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.268310546875 2 526.26601 1050.51747 1.4092 0.00074161 2.6692 0.0014047 4.0784 0.0021463 526.266949426781 100.1 0.15851 93.929 93.838 93.996 -6.1757 15 9 2 0 0 0 0.28023 1 66866 66866 18.146 0.011366 1 29896000 47847 11922 32249 32992 55813 55813 -0.005770270971424907 PTQPWRRCRC 10 Unmodified _PTQPWRRCRC_ 0 0 0 REV__ENSG00000176020|ENST00000320431|AMIGO3 REV__ENSG00000176020|ENST00000320431|AMIGO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 31.7 1 31.7 31.2 32.2 0 0 0 0 1.0019 1 16522 16522 0.15932 0 1 + 47848 22904 32250 32993 55814 55814 -0.015383377949547139 PTQPWRRCRC 10 Unmodified _PTQPWRRCRC_ 0 0 0 REV__ENSG00000176020|ENST00000320431|AMIGO3 REV__ENSG00000176020|ENST00000320431|AMIGO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8820495605469 3 434.881731 1301.62336 NaN NaN NaN NaN NaN NaN NaN 89.294 1 88.793 88.293 89.293 -0.50171 0 0 0 0.99091 1 48823 48823 0.69767 0.24315 1 + 47849 22904 32250 32993 55815 55815 -0.015383377949547139 PTQRLRVA 8 Unmodified _PTQRLRVA_ 0 0 0 ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17 ENSG00000092096|ENST00000354772|SLC22A17 ENSG00000092096|ENST00000354772|SLC22A17 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.7369689941406 2 470.787976 939.561398 0.40302 0.00018974 -0.4113 -0.00019363 -0.00828 -3.8981E-06 470.78764253020336 17.596 0.21157 15.01 14.925 15.136 -2.5866 86 37 3 0 0 0 8.7369 1 9236 9236 23.148 3.7094 1 17525000 47850 1604 32251 32994 55816 55816 0.08920002119850778 PTQSLLMYM 9 Unmodified _PTQSLLMYM_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7669067382812 2 542.264296 1082.51404 0.74083 0.00040172 0.73182 0.00039684 1.4726 0.00079856 542.2645194620865 80.313 0.6742 74.137 73.659 74.334 -6.1757 51 39 2 0 0 0 0.094149 1 52701 52701 34.402 9.4108 1 19123000 47851 8162 32252 32995 55817 55817 -0.02391781257688308 PTQTITIEL 9 Unmodified _PTQTITIEL_ 0 0 0 ENST00000463101.1_1_22:24579934-24582448:+|nuORF;ENSG00000099994|ENST00000358321|SUSD2 ENST00000463101.1_1_22:24579934-24582448:+|nuORF ENST00000463101.1_1_22:24579934-24582448:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2869262695312 2 508.28714 1014.55973 0.21931 0.00011147 0.033282 1.6917E-05 0.2526 0.00012839 508.2872425812012 83.643 0.28162 83.146 82.962 83.243 -0.49751 25 11 3 0 0 0 0.14602 1 45741 45741 28.487 1.6032 1 1606900 47852 1733 32253 32996 55818 55818 0.05302903520566815 PTRAAKLRL 9 Unmodified _PTRAAKLRL_ 0 0 0 ENST00000424352.6_1_15:37392545-37392659:-|nuORF ENST00000424352.6_1_15:37392545-37392659:-|nuORF ENST00000424352.6_1_15:37392545-37392659:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.2488403320312 2 513.33255 1024.65055 1.1237 0.00057683 -0.45233 -0.0002322 0.67136 0.00034463 513.3324661887071 54.008 0.17743 48.143 48.034 48.211 -5.8653 15 9 2 0 0 0 0.21367 1 34246 34246 4.756 4.756 1 6675900 47853 13145 32254 32997 55819 55819 0.13920837079353987 PTRPHIAG 8 Unmodified _PTRPHIAG_ 0 0 0 ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7407531738281 2 424.740494 847.466435 NaN NaN NaN NaN NaN NaN NaN 32.919 1 32.949 32.449 33.449 0.029743 0 0 0 0.93587 1 17301 17301 13.508 0 1 47854 13880 32255 32998 55820 55820 0.03660068648662218 PTRPHIAG 8 Unmodified _PTRPHIAG_ 0 0 0 ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF ENST00000471560.1_1_2:170680960-170681107:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.740966796875 2 424.740494 847.466435 1.3157 0.00055884 -0.24429 -0.00010376 1.0714 0.00045508 424.74036466890357 36.96 0.55027 32.676 32.405 32.955 -4.2835 78 33 3 0 0 0 0.57045 1 21590 21590 28.487 0 1 80485000 47855 13880 32255 32998 55821 55821 0.03660068648662218 PTRVVTNY 8 Unmodified _PTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2593383789062 2 475.258717 948.50288 -0.34219 -0.00016263 3.713 0.0017646 3.3708 0.001602 475.2609768281543 36.471 0.36422 36.221 36.086 36.45 -0.2497 23 16 2 0 0 0 0.07965 1 19143 19143 107.19 58.841 1 3817800 47856 10212 32256 32999 55822 55822 0.026569007546981993 PTRVVTNY 8 Unmodified _PTRVVTNY_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2611999511719 2 475.258717 948.50288 0.2187 0.00010394 1.4544 0.00069123 1.6731 0.00079517 475.25955704203676 41.446 0.35851 36.838 36.703 37.062 -4.6079 36 23 2 0 0 0 0.079701 1 24956 24956 106.94 52.167 1 21536000 47857 10212 32256 32999 55823 55823 0.026569007546981993 PTSEVRVPL 9 Unmodified _PTSEVRVPL_ 0 0 0 REV__nc|ENSG00000141384|Q92750-2|TAF4B REV__nc|ENSG00000141384|Q92750-2|TAF4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.289794921875 2 499.287474 996.560395 0.23732 0.00011849 -0.58928 -0.00029422 -0.35196 -0.00017573 499.287261038231 42.086 0.53701 42.086 41.864 42.401 0 95 27 5 0 0 0 0.34999 1 22692 22692 14.838 0.93222 1 106950000 + 47858 20530 32257 33000 55824 55824 0.061977429602734446 PTSLFAIQVN 10 Unmodified _PTSLFAIQVN_ 0 0 0 nc|ENSG00000174130|Q9Y2C9-2|TLR6;ENSG00000174130|ENST00000508254|TLR6 nc|ENSG00000174130|Q9Y2C9-2|TLR6 nc|ENSG00000174130|Q9Y2C9-2|TLR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3001098632812 2 545.300581 1088.58661 NaN NaN NaN NaN NaN NaN NaN 44.384 1 44.362 43.862 44.862 -0.022064 0 0 0 0.88176 1 23813 23813 8.7454 0 1 47859 8392 32258 33001 55825 55825 0.0458601213174461 PTSLTHTSR 9 Unmodified _PTSLTHTSR_ 0 0 0 nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23 nc|ENSG00000040633|Q9BUL5-3|PHF23 nc|ENSG00000040633|Q9BUL5-3|PHF23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7656860351562 2 500.26453 998.514508 1.2867 0.00064367 3.3073 0.0016545 4.594 0.0022982 500.76643912916666 37.752 0.55768 33.383 33.128 33.686 -4.3689 121 33 5 0 0 0 0.23158 1 22088 22088 20.454 3.5113 1 47487000 47860 652 32259 33002 55826 55826 0.015190977780434878 PTSPTAIRTL 10 Unmodified _PTSPTAIRTL_ 0 0 0 nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2 nc|ENSG00000144712|O75155-2|CAND2 nc|ENSG00000144712|O75155-2|CAND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8063354492188 2 528.806031 1055.59751 -0.12786 -6.7613E-05 1.0617 0.00056144 0.93385 0.00049383 528.8065457619672 56.902 0.31804 56.416 56.205 56.523 -0.48554 40 14 4 0 0 0 0.17253 1 30965 30965 43.858 0 1 11794000 47861 5635 32260 33003 55827 55827 0.07193414506036788 PTSQATLL 8 Unmodified _PTSQATLL_ 0 0 0 REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2 REV__nc|ENSG00000101888|Q9NPJ8-4|NXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.46142578125 1 830.46181 829.454533 0.75986 0.00063103 0.087538 7.2697E-05 0.84739 0.00070373 830.46176974716 48.923 0.53123 43.527 43.186 43.717 -5.3961 58 32 2 0 0 0 0.25522 1 30355 30355 61.357 0 1 101390000 + 47862 18200 32261 33004 55828 55828 0.03298407114800739 PTSQNYCSL 9 Unmodified _PTSQNYCSL_ 0 0 0 ENSG00000134508|ENST00000256925|CABLES1;ENST00000580644.5_1_18:20716467-20770281:+|nuORF;ENST00000583220.5_1_18:20716467-20776816:+|nuORF ENSG00000134508|ENST00000256925|CABLES1 ENSG00000134508|ENST00000256925|CABLES1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.2508239746094 2 506.723849 1011.43315 0.69885 0.00035413 -0.9544 -0.00048362 -0.25555 -0.00012949 506.72303628442546 35.249 0.38814 31.154 30.898 31.286 -4.0951 47 22 3 0 0 0 0.1325 1 20354 20354 19.257 2.3147 1 20645000 47863 4615 32262 33005 55829 55829 -0.07211345976213579 PTSQPPVP 8 Unmodified _PTSQPPVP_ 0 0 0 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.4389038085938 1 822.435595 821.428318 1.2346 0.0010154 -0.22334 -0.00018369 1.0113 0.00083169 822.4354599934034 50.556 0.32628 45.017 44.854 45.18 -5.5391 29 20 2 0 0 0 0.25522 1 31790 31790 61.357 3.8861 1 25962000 47864 2033 32263 33006 55830 55830 0.010461379433309048 PTSRQAAAKL 10 Unmodified _PTSRQAAAKL_ 0 0 0 GATAD2A|p.A342T|1|0.25|ENSG00000167491|chr19:19498542-19498542|G/A|missense_variant GATAD2A|p.A342T|1|0.25|ENSG00000167491|chr19:19498542-19498542|G/A|missense_variant GATAD2A|p.A342T|1|0.25|ENSG00000167491|chr19:19498542-19498542|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.8014526367188 2 521.803823 1041.59309 NaN NaN NaN NaN NaN NaN NaN 53.708 1 53.708 53.208 54.208 0 0 0 0 0.83398 1 29784 29784 10.824 0.64053 1 47865 15899 32264 33007 55831 55831 0.073959500831279 PTSRVYTPLM 10 Unmodified _PTSRVYTPLM_ 0 0 0 REV__nc|ENSG00000106633|P35557-3|GCK REV__nc|ENSG00000106633|P35557-3|GCK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.3321533203125 2 582.807716 1163.60088 1.3214 0.0007701 -0.52104 -0.00030367 0.80033 0.00046644 583.3089344731002 79.593 0.60365 73.417 73.073 73.677 -6.1757 48 35 2 0 0 0 0.22327 1 52032 52032 19.257 13.525 1 14616000 + 47866 18523 32265 33008 55832 55832 0.025623412883760466 PTSSCLFSV 9 Unmodified _PTSSCLFSV_ 0 0 0 ENSG00000176531|ENST00000292140|PHLDB3 ENSG00000176531|ENST00000292140|PHLDB3 ENSG00000176531|ENST00000292140|PHLDB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.1276245117188 1 940.444445 939.437169 0.67207 0.00063204 -1.1999 -0.0011285 -0.52784 -0.00049641 940.4440323564473 75.339 0.23994 74.862 74.74 74.98 -0.47714 18 13 2 0 0 0 0.41742 1 41299 41299 11.64 0 1 1162200 47867 8601 32266 33009 55833 55833 -0.034972564824897745 PTSSLLDLG 9 Unmodified _PTSSLLDLG_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.4848022460938 1 902.482939 901.475663 0.047587 4.2946E-05 3.0517 0.0027541 3.0993 0.0027971 902.4858395775183 63.069 0.2264 63.069 62.92 63.146 0 15 9 2 0 0 0 0.095405 1 35131 35131 34.102 1.797 1 1122000 47868 5275 32267 33010 55834 55834 0.020983724236771195 PTSSPAYDV 9 Unmodified _PTSSPAYDV_ 0 0 0 REV__ENSG00000153208|ENST00000295408|MERTK REV__ENSG00000153208|ENST00000295408|MERTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7195739746094 2 468.71909 935.423627 0.49947 0.00023411 -0.51021 -0.00023914 -0.010735 -5.0318E-06 468.7188550141677 38.098 0.31829 38.098 37.865 38.184 0 32 15 3 0 0 0 0.30562 1 20260 20260 16.942 5.302 1 8434400 + 47869 21160 32268 33011 55835 55835 -0.046667909900975246 PTSSPAYDV 9 Unmodified _PTSSPAYDV_ 0 0 0 REV__ENSG00000153208|ENST00000295408|MERTK REV__ENSG00000153208|ENST00000295408|MERTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.4308471679688 1 936.430903 935.423627 0.25996 0.00024343 -0.10545 -9.875E-05 0.1545 0.00014468 936.4308776445314 38.118 0.35494 38.118 37.865 38.22 0 39 17 3 0 0 0 0.2001 2 20335 20264;20335 23.148 5.0134 1 8600700 + 47870 21160 32268 33011 55836;55837 55837 -0.046667909900975246 PTSSRHLSQE 10 Unmodified _PTSSRHLSQE_ 0 0 0 ENST00000219204.7_1_16:57286366-57286663:+|nuORF ENST00000219204.7_1_16:57286366-57286663:+|nuORF ENST00000219204.7_1_16:57286366-57286663:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.1905822753906 3 381.191393 1140.55235 NaN NaN NaN NaN NaN NaN NaN 81.616 1 75.441 74.941 75.941 -6.1757 0 0 0 0.91092 1 53583 53583 7.4771 2.7611 1 47871 11022 32269 33012 55838 55838 -0.012304360271400583 PTSSSVSSTF 10 Unmodified _PTSSSVSSTF_ 0 0 0 REV__nc|ENSG00000169894|Q02505-2|MUC3A REV__nc|ENSG00000169894|Q02505-2|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2352905273438 2 500.235104 998.455655 -0.37391 -0.00018704 1.0133 0.00050687 0.63935 0.00031983 500.235340324201 33.107 0.33692 33.107 32.927 33.264 0 39 16 3 0 0 0 0.60623 1 17284 17284 10.824 0.64053 1 2656200 + 47872 22433 32270 33013 55839 55839 -0.0436342330693833 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3184814453125 2 691.317157 1380.61976 -0.25885 -0.00017894 -0.21204 -0.00014659 -0.47089 -0.00032553 691.3169765464622 48.977 0.29774 48.977 48.786 49.083 0 26 14 2 0 0 0 0.53952 1 26877 26877 14.405 1.5328 1 3776100 47873 3160 32271 33014 55840 55840 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3173217773438 2 691.317157 1380.61976 -0.33297 -0.00023019 0.78399 0.00054199 0.45103 0.0003118 691.3173897773437 52.14 0.29079 52.14 51.996 52.287 0 21 12 2 0 0 0 0.21511 1 28841 28841 31.268 11.906 1 2807100 47874 3160 32271 33014 55841 55841 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 691.3175048828125 2 691.317157 1380.61976 NaN NaN NaN NaN NaN NaN NaN 51.675 1 51.675 51.175 52.175 0 0 0 0 0.82644 1 28553 28553 10.8 3.6978 1 47875 3160 32271 33014 55842 55842 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.318115234375 2 691.317157 1380.61976 0.75698 0.00052332 0.38668 0.00026732 1.1437 0.00079063 691.8189553682682 49.935 0.26086 49.542 49.431 49.692 -0.3923 19 12 2 0 0 0 0.61059 1 26926 26926 10.8 0.64894 1 3392700 47876 3160 32271 33014 55843 55843 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.3173217773438 2 691.317157 1380.61976 0.33232 0.00022974 0.11445 7.912E-05 0.44677 0.00030886 691.3171524691024 52.779 0.29752 52.327 52.159 52.457 -0.45173 25 14 2 0 0 0 0.44182 1 28528 28528 19.362 8.5624 1 4647800 47877 3160 32271 33014 55844 55844 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 691.317157 1380.61976 0.33984 0.00023494 0.13856 9.5786E-05 0.4784 0.00033072 691.8187055877204 49.454 0.27214 49.454 49.333 49.606 0 -0.04396 -0.00019494 NaN 10.8 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3412900 47878 3160 32271 33014 -0.055324506068473056 PTSTEEQQLYW 11 Unmodified _PTSTEEQQLYW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 691.317157 1380.61976 0.57695 0.00039885 -1.0868 -0.00075133 -0.50986 -0.00035248 691.3164616151371 49.428 0.23712 49.036 48.861 49.098 -0.3923 0.029517 -0.00055045 NaN 14.405 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2448100 47879 3160 32271 33014 -0.055324506068473056 PTSVIQVTN 9 Unmodified _PTSVIQVTN_ 0 0 0 ENSG00000153914|ENST00000334121|SREK1;ENST00000523851.1_1_5:65440204-65449482:+|nuORF;ENST00000520058.1_1_5:65440204-65449453:+|nuORF ENSG00000153914|ENST00000334121|SREK1 ENSG00000153914|ENST00000334121|SREK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2850341796875 2 479.763832 957.513111 0.79198 0.00037996 1.224 0.00058724 2.016 0.00096721 479.76475674622134 64.272 0.3166 63.787 63.654 63.971 -0.48512 26 14 3 0 0 0 0.079233 1 35097 35097 43.858 9.7559 1 1359100 47880 6280 32272 33015 55845 55845 0.03265463689297121 PTSVIVAGTI 10 Unmodified _PTSVIVAGTI_ 0 0 0 REV__ENSG00000151413|ENST00000281081|NUBPL REV__ENSG00000151413|ENST00000281081|NUBPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2850341796875 2 479.2844 956.554247 0.78285 0.00037521 0.27787 0.00013318 1.0607 0.00050839 479.28480505936807 64.328 0.27568 63.843 63.739 64.014 -0.48512 30 12 3 0 0 0 0.074936 1 35097 35097 52.268 6.2474 1 2229600 + 47881 21066 32273 33016 55846 55846 0.07423224728779587 PTTFVMVVM 9 Unmodified _PTTFVMVVM_ 0 0 0 ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5 ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENST00000470936.1_1_3:69134198-69151212:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7646484375 2 512.763932 1023.51331 0.56979 0.00029217 0.86883 0.0004455 1.4386 0.00073767 512.764558567633 32.72 0.27439 28.863 28.67 28.945 -3.8562 20 13 2 0 0 0 0.052168 1 18693 18693 44.407 2.3125 1 8642800 47882 5641 32274 33017 55847 55847 0.002494240932833236 PTTGTCQMSLF 11 Unmodified _PTTGTCQMSLF_ 0 0 0 nc|ENSG00000142856|Q13352-2|ITGB3BP;nc|ENSG00000142856|Q13352-4|ITGB3BP;nc|ENSG00000142856|Q13352-3|ITGB3BP;ENST00000460251.5_1_1:63924001-63988867:-|nuORF;ENSG00000142856|ENST00000271002|ITGB3BP;ENST00000460394.5_1_1:63917661-63988804:-|nuORF;nc|ENSG00000142856|Q13352-5|ITGB3BP nc|ENSG00000142856|Q13352-2|ITGB3BP nc|ENSG00000142856|Q13352-2|ITGB3BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.8473205566406 3 395.84747 1184.52058 0.07962 3.1517E-05 -0.49817 -0.0001972 -0.41855 -0.00016568 395.8474191901627 31.325 0.28869 31.325 31.152 31.441 0 44 13 5 0 0 0 0.68427 1 16374 16374 2.6312 0 1 5968600 47883 16238 32275 33018 55848 55848 -0.06429888096977265 PTTLLWVQY 9 Unmodified _PTTLLWVQY_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15;nc|ENSG00000172766|Q6N069-4|NAA16;nc|ENSG00000172766|Q6N069-3|NAA16;nc|ENSG00000172766|Q6N069-2|NAA16;ENSG00000172766|ENST00000379406|NAA16 ENSG00000164134|ENST00000296543|NAA15;ENSG00000172766|ENST00000379406|NAA16 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.305419921875 2 560.8055 1119.59645 0.70827 0.0003972 0.57827 0.00032429 1.2865 0.00072149 560.8075784002981 58.15 1.2073 52.123 51.638 52.845 -6.0275 178 67 4 0 0 0 0.34134 1 37448 37448 10.824 0 1 164380000 47884 7146;8253 32276 33019 55849 55849 0.04143200137150416 PTTLSEAVP 9 Unmodified _PTTLSEAVP_ 0 0 0 ENSG00000130348|ENST00000369046|QRSL1 ENSG00000130348|ENST00000369046|QRSL1 ENSG00000130348|ENST00000369046|QRSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7452697753906 2 457.745108 913.475663 1.1 0.00050354 -0.66868 -0.00030608 0.43137 0.00019746 457.74476481049584 46.348 0.22631 46.348 46.186 46.412 0 18 10 3 0 0 0 0.2001 1 25321 25321 23.148 0 1 2542800 47885 4207 32277 33020 55850 55850 0.015463724236610688 PTTSFTPTI 9 Unmodified _PTTSFTPTI_ 0 0 0 REV__ENSG00000198911|ENST00000361204|SREBF2 REV__ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 964.4960327148438 1 964.498589 963.491313 0.48224 0.00046512 -0.06033 -5.8188E-05 0.42191 0.00040693 964.498390128821 72.13 0.46357 71.654 71.415 71.878 -0.47609 66 19 4 0 0 0 0.49272 1 39591 39591 7.9102 0 1 29920000 + 47886 24097 32278 33021 55851 55851 0.008106589407248066 PTTVAKAPTV 10 Unmodified _PTTVAKAPTV_ 0 0 0 REV__ENST00000461347.5_1_2:232323706-232327997:-|nuORF REV__ENST00000461347.5_1_2:232323706-232327997:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.790771484375 2 492.78985 983.565146 0.068178 3.3597E-05 0.97923 0.00048256 1.0474 0.00051615 492.7904209316211 65.179 0.26862 65.179 65.052 65.32 0 22 10 3 0 0 0 0.50362 1 36357 36357 16.149 1.3108 1 1240900 + 47887 18949 32279 33022 55852 55852 0.07270627103036986 PTTYKRRLQKR 11 Unmodified _PTTYKRRLQKR_ 0 0 0 nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN;ENST00000558604.1_1_15:89417038-89417709:+|nuORF nc|ENSG00000157766|P16112-2|ACAN nc|ENSG00000157766|P16112-2|ACAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.4718322753906 4 362.471755 1445.85791 -0.029287 -1.0616E-05 0.64167 0.00023259 0.61238 0.00022197 362.4719943694468 14.44 0.19045 14.447 14.342 14.532 0.0073986 15 7 3 0 0 0 0.73237 1 7160 7160 1.2148 0.10508 1 9309800 47888 6539 32280 33023 55853 55853 0.15281999556714254 PTVAPADAGAV 11 Unmodified _PTVAPADAGAV_ 0 0 0 REV__ENSG00000119973|ENST00000239032|PRLHR REV__ENSG00000119973|ENST00000239032|PRLHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7535095214844 2 484.756007 967.497461 0.50898 0.00024673 -1.6469 -0.00079834 -1.1379 -0.00055161 484.7559846860378 36.979 0.56993 36.979 36.547 37.117 0 48 27 3 0 0 0 0.48615 1 19516 19516 17.113 4.5813 1 10653000 + 47889 19223 32281 33024 55854 55854 0.012411771722327103 PTVCIFKTK 9 Unmodified _PTVCIFKTK_ 0 0 0 REV__nc|ENSG00000168610|P40763-3|STAT3 REV__nc|ENSG00000168610|P40763-3|STAT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2706909179688 2 518.79662 1035.57869 0.5082 0.00026365 1.5546 0.00080654 2.0628 0.0010702 518.7981828601496 27.43 0.27706 24.393 24.317 24.594 -3.0365 22 13 2 0 0 0 0.209 1 15151 15151 7.2892 0 1 13922000 + 47890 22327 32282 33025 55855 55855 0.06232161610637377 PTVDGTWKTPS 11 Unmodified _PTVDGTWKTPS_ 0 0 0 ENSG00000143319|ENST00000368219|ISG20L2 ENSG00000143319|ENST00000368219|ISG20L2 ENSG00000143319|ENST00000368219|ISG20L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1188.38525390625 1 1188.58953 1187.58225 0.11616 0.00013807 -4.4412 -0.0052787 -4.325 -0.0051407 1188.5826636428394 85.893 0.25648 85.955 85.727 85.983 0.061638 12 10 2 0 0 0 0.29134 1 47472 47472 0.96228 0 1 42105000 47891 5490 32283 33026 55856 55856 -0.0040349708181111055 PTVDLASSI 9 Unmodified _PTVDLASSI_ 0 0 0 nc|ENSG00000136379|Q6PCB6-2|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7445373535156 2 451.745108 901.475663 0.79002 0.00035689 1.8169 0.00082079 2.607 0.0011777 451.74490467754833 56.332 0.36061 50.355 50.221 50.581 -5.9769 32 20 2 0 0 0 0.012148 1 35950 35950 74.423 7.0789 1 17163000 47892 16214 32284 33027 55857 55857 0.02098372423665751 PTVELLHAD 9 Unmodified _PTVELLHAD_ 0 0 0 REV__nc|ENSG00000113494|P16471-8|PRLR REV__nc|ENSG00000113494|P16471-8|PRLR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7636108398438 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 6.4432 1 6.3586 5.8586 6.8586 -0.08463 0 0 0 0.85798 1 3181 3181 0.52476 0 1 + 47893 29581 32285 33028 55858 55858 0.016094636892717062 PTVKQDRQPD 10 Unmodified _PTVKQDRQPD_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2244567871094 3 395.207043 1182.5993 -0.16809 -6.6431E-05 2.1907 0.00086576 2.0226 0.00079933 395.2079018572829 29.927 0.21598 29.957 29.921 30.137 0.030106 13 8 2 0 0 0 0.23057 1 15630 15630 7.9454 1.7536 1 794480 + 47894 19026 32286 33029 55859 55859 0.015304235239909758 PTVLEALYL 9 Unmodified _PTVLEALYL_ 0 0 0 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF;REV__nc|ENSG00000075151|O43432|EIF4G3 REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.794921875 2 509.794601 1017.57465 0.055123 2.8101E-05 -0.092416 -4.7113E-05 -0.037293 -1.9012E-05 509.7946867274466 93.058 0.75964 86.882 86.5 87.26 -6.1757 98 53 3 0 0 0 0.06187 1 61522 61522 42.095 0 1 32557000 + 47895 18939;17562 32287 33030 55860 55860 0.06656395388563396 PTVNNLEYI 9 Unmodified _PTVNNLEYI_ 0 0 0 REV__ENSG00000203963|ENST00000684719|C1orf141 REV__ENSG00000203963|ENST00000684719|C1orf141 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7772216796875 2 531.776939 1061.53933 0.90974 0.00048378 3.7697 0.0020047 4.6795 0.0024884 532.2799582942731 83.947 0.53693 77.771 77.459 77.996 -6.1757 66 28 3 0 0 0 0.094149 1 55266 55266 34.402 3.1334 1 17289000 + 47896 24130 32288 33031 55861 55861 0.011017328607522359 PTVNNLEYI 9 Unmodified _PTVNNLEYI_ 0 0 0 REV__ENSG00000203963|ENST00000684719|C1orf141 REV__ENSG00000203963|ENST00000684719|C1orf141 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3035278320312 2 531.776939 1061.53933 0.90974 0.00048378 3.7697 0.0020047 4.6795 0.0024884 532.2799582942731 83.947 0.53693 77.771 77.459 77.996 -6.1757 66 28 3 0 0 0 0.12771 1 55288 55288 34.402 3.1334 1 17289000 + 47897 24130 32288 33031 55862 55862 0.011017328607522359 PTVQGGLPVF 10 Unmodified _PTVQGGLPVF_ 0 0 0 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7848815917969 2 507.784567 1013.55458 0.26558 0.00013486 0.12215 6.2027E-05 0.38773 0.00019688 507.7846215049801 72.243 0.50114 71.767 71.499 72 -0.4761 38 22 2 0 0 0 0.20962 1 39547 39547 32.786 3.7041 1 6103000 47898 3577 32289 33032 55863 55863 0.04834644448601466 PTVQHLVESI 10 Unmodified _PTVQHLVESI_ 0 0 0 REV__ENSG00000081985|ENST00000674203|IL12RB2 REV__ENSG00000081985|ENST00000674203|IL12RB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.340576171875 2 561.811313 1121.60807 1.4911 0.0008377 2.2473 0.0012626 3.7384 0.0021003 562.3131978018556 98.04 0.30032 91.864 91.668 91.968 -6.1757 27 18 2 0 0 0 0.22667 1 65040 65040 15.847 1.9411 1 27246000 + 47899 17700 32290 33033 55864 55864 0.05213397160491695 PTWLSKNTL 9 Unmodified _PTWLSKNTL_ 0 0 0 REV__ENST00000302763.11_1_5:138160414-138163228:+|nuORF REV__ENST00000302763.11_1_5:138160414-138163228:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.302978515625 2 530.295299 1058.57605 0.99402 0.00052713 2.9085 0.0015424 3.9025 0.0020695 530.295247880427 66.143 0.50663 66.152 65.911 66.417 0.0095596 97 25 6 0 0 0 0.28047 1 36317 36317 18.135 0 1 32322000 + 47900 25340 32291 33034 55865 55865 0.049100294773325004 PTWRENCSF 9 Unmodified _PTWRENCSF_ 0 0 0 ENST00000264956.10_2_4:5813382-5814396:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5035705566406 3 380.502803 1138.48658 -0.40252 -0.00015316 0.65557 0.00024945 0.25305 9.6287E-05 380.5029946150872 35.54 0.31855 35.318 35.176 35.495 -0.2224 35 14 3 0 0 0 0.54444 1 18590 18590 2.7352 0.23671 1 12431000 47901 11322 32292 33035 55866 55866 -0.07712548473705283 PTWRENCSF 9 Unmodified _PTWRENCSF_ 0 0 0 ENST00000264956.10_2_4:5813382-5814396:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 380.502803 1138.48658 -0.04797 -1.8253E-05 0.53121 0.00020213 0.48324 0.00018388 380.502961665435 35.292 0.27198 35.319 35.186 35.458 0.027401 -0.032367 -0.00018923 NaN 2.7352 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 18608000 47902 11322 32292 33035 -0.07712548473705283 PTWWGPQRLN 10 Unmodified _PTWWGPQRLN_ 0 0 0 ENSG00000163382|ENST00000368235|NAXE ENSG00000163382|ENST00000368235|NAXE ENSG00000163382|ENST00000368235|NAXE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.8203125 2 627.822547 1253.63054 NaN NaN NaN NaN NaN NaN NaN 24.597 1 24.597 24.097 25.097 0 0 0 0 0.97302 1 12576 12576 3.5965 1.7523 1 47903 6987 32293 33036 55867 55867 0.013870413487666156 PTWYSDDPWL 10 Unmodified _PTWYSDDPWL_ 0 0 0 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.8281860351562 2 640.285128 1278.5557 -0.1594 -0.00010206 -1.0782 -0.00069034 -1.2376 -0.0007924 640.2845763724129 31.613 0.32108 31.613 31.418 31.739 0 31 15 3 0 0 0 0.23991 1 16409 16409 1.4819 0.15237 1 1292500 + 47904 29858 32294 33037 55868 55868 -0.07243185973129584 PTYLVPKDQ 9 Unmodified _PTYLVPKDQ_ 0 0 0 ENSG00000169330|ENST00000305428|MINAR1 ENSG00000169330|ENST00000305428|MINAR1 ENSG00000169330|ENST00000305428|MINAR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.7503662109375 2 530.787307 1059.56006 1.0125 0.00053744 0.35802 0.00019003 1.3706 0.00072747 531.2893493855723 36.168 0.25528 31.975 31.741 31.996 -4.1928 23 15 2 0 0 0 0.19613 1 20981 20981 7.9102 0 1 5181500 47905 7865 32295 33038 55869 55869 0.03266323240427482 PTYSEDSKY 9 Unmodified _PTYSEDSKY_ 0 0 0 REV__ENST00000506851.5_1_4:145888309-146017251:-|nuORF REV__ENST00000506851.5_1_4:145888309-146017251:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.8303833007812 3 363.82935 1088.46622 NaN NaN NaN NaN NaN NaN NaN 85.672 1 79.496 78.996 79.996 -6.1757 0 0 0 0.82396 1 56440 56440 2.7352 0 1 + 47906 21880 32296 33039 55870 55870 -0.07447440652504156 PTYTSGLTF 9 Unmodified _PTYTSGLTF_ 0 0 0 REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7444152832031 2 493.745108 985.475663 -0.25672 -0.00012675 -1.297 -0.00064037 -1.5537 -0.00076712 493.7443493407012 71.182 0.40892 71.182 70.975 71.384 0 44 19 3 0 0 0 0.2143 1 39712 39712 21.747 1.293 1 5579000 + 47907 27124 32297 33040 55871 55871 -0.017656275763329177 PTYTSGLTF 9 Unmodified _PTYTSGLTF_ 0 0 0 REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.745108 985.475663 -0.25672 -0.00012675 -1.297 -0.00064037 -1.5537 -0.00076712 493.7443493407012 71.182 0.40892 71.182 70.975 71.384 0 0.0044388 -1.263E-05 NaN 21.747 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 5579000 + 47908 27124 32297 33040 -0.017656275763329177 PTYTSGLTF 9 Unmodified _PTYTSGLTF_ 0 0 0 REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.745108 985.475663 0.70982 0.00035047 -1.2577 -0.00062097 -0.54786 -0.0002705 493.7445088043451 71.649 0.34149 71.173 70.999 71.341 -0.47609 -0.0044388 2.6168E-05 NaN 21.747 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 875730 + 47909 27124 32297 33040 -0.017656275763329177 PTYTSGLTFSF 11 Unmodified _PTYTSGLTFSF_ 0 0 0 REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF REV__ENST00000444527.2_1_8:56364433-56364982:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7930908203125 2 610.795329 1219.5761 NaN NaN NaN NaN NaN NaN NaN 40.936 1 40.936 40.436 41.436 0 0 0 0 0.93224 1 22038 22038 5.7319 0 1 + 47910 27124 32298 33041 55872 55872 -0.02490015313355798 PTYVVYYSQ 9 Unmodified _PTYVVYYSQ_ 0 0 0 nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN;nc|ENSG00000166451|Q96H22-2|CENPN;nc|ENSG00000166451|Q96H22-5|CENPN nc|ENSG00000166451|Q96H22-4|CENPN nc|ENSG00000166451|Q96H22-4|CENPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7781982421875 2 560.27149 1118.52843 0.64429 0.00036098 3.2885 0.0018424 3.9328 0.0022034 560.7760334608889 62.039 0.47633 55.863 55.597 56.073 -6.1757 45 26 2 0 0 0 0.2324 1 39850 39850 28.487 9.2299 1 100340000 47911 7490 32299 33042 55873 55873 -0.02609669513526569 PVACWPCQEQF 11 Unmodified _PVACWPCQEQF_ 0 0 0 REV__ENST00000368547.3_1_10:135176069-135176375:-|nuORF REV__ENST00000368547.3_1_10:135176069-135176375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.5232849121094 3 436.523098 1306.54746 0.16302 7.1162E-05 0.59442 0.00025948 0.75744 0.00033064 436.523420671537 31.495 0.1984 31.392 31.26 31.459 -0.10269 16 7 3 0 0 0 0.70701 1 16400 16400 1.4551 0.24029 1 4573500 + 47912 26012 32300 33043 55874 55874 -0.09354779485784093 PVAEEEEESDS 11 Unmodified _PVAEEEEESDS_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7446899414062 2 610.743687 1219.47282 1.2162 0.00074276 -0.43093 -0.00026319 0.78523 0.00047958 610.7435019672407 64.607 0.65631 58.431 58.167 58.823 -6.1757 98 36 3 0 0 0 0.54936 1 41719 41719 13.906 4.5229 1 66747000 + 47913 18302 32301 33044 55875 55875 -0.12813592282464015 PVAERQSLL 9 Unmodified _PVAERQSLL_ 0 0 0 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 REV__nc|ENSG00000033122|Q96NW7-2|LRRC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7924499511719 2 506.792924 1011.57129 0.84056 0.00042599 -0.29279 -0.00014838 0.54777 0.0002776 506.79284016348845 46.436 0.27246 46.436 46.313 46.585 0 26 12 3 0 0 0 0.2143 1 25383 25383 21.747 2.4897 1 2465700 + 47914 17154 32302 33045 55876 55876 0.06597145334569632 PVALLEAML 9 Unmodified _PVALLEAML_ 0 0 0 REV__ENSG00000135220|ENST00000251566|UGT2A3 REV__ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7762756347656 2 478.777896 955.54124 0.25917 0.00012408 -0.76982 -0.00036857 -0.51065 -0.00024449 478.7769817670554 77.988 0.081955 77.988 77.922 78.004 0 5 3 2 0 0 0 0.58466 1 43350 43350 2.3027 0 1 483140 + 47915 20044 32303 33046 55877 55877 0.06169070345004002 PVALLYRCCFC 11 Unmodified _PVALLYRCCFC_ 0 0 0 nc|ENSG00000169297|P51843-2|NR0B1;ENSG00000169297|ENST00000378970|NR0B1 nc|ENSG00000169297|P51843-2|NR0B1 nc|ENSG00000169297|P51843-2|NR0B1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2282104492188 3 429.873074 1286.59739 -0.47087 -0.00020241 3.9321 0.0016903 3.4613 0.0014879 430.20970998649864 30.661 0.20419 30.661 30.587 30.791 0 12 9 2 0 0 0 0.3058 1 15985 15985 0.50596 0 1 1088100 47916 7861 32304 33047 55878 55878 -0.03444368081477478 PVANIIELI 9 Unmodified _PVANIIELI_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.3025817871094 2 491.302593 980.590633 0.5815 0.00028569 0.34408 0.00016905 0.92558 0.00045474 491.30251306426436 93.165 0.29456 92.708 92.542 92.836 -0.4574 20 14 2 0 0 0 0.30562 1 50894 50894 16.942 9.0321 1 401300 + 47917 21677 32305 33048 55879 55879 0.09956101625471092 PVANIIELI 9 Unmodified _PVANIIELI_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 491.302593 980.590633 0.5815 0.00028569 0.34408 0.00016905 0.92558 0.00045474 491.30251306426436 93.165 0.29456 92.708 92.542 92.836 -0.4574 0 0 NaN 16.942 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 401300 + 47918 21677 32305 33048 0.09956101625471092 PVAPHTTEPM 10 Unmodified _PVAPHTTEPM_ 0 0 0 nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENSG00000173039|ENST00000406246|RELA;ENST00000525693.5_1_11:65421851-65422496:-|nuORF;ENST00000531484.5_1_11:65421851-65429483:-|nuORF nc|ENSG00000173039|Q04206-2|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF nc|ENSG00000173039|Q04206-2|RELA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2620239257812 2 540.263142 1078.51173 NaN NaN NaN NaN NaN NaN NaN 56.609 1 56.54 56.04 57.04 -0.068737 0 0 0 0.91523 1 30797 30797 7.2892 0 1 47919 8281;14908 32306 33049 55880 55880 -0.024384936711157934 PVAPRVAGAI 10 Unmodified _PVAPRVAGAI_ 0 0 0 REV__ENST00000477529.1_1_7:100485861-100486167:+|nuORF REV__ENST00000477529.1_1_7:100485861-100486167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7916259765625 2 475.792727 949.5709 -0.1295 -6.1613E-05 -0.23397 -0.00011132 -0.36347 -0.00017294 475.7924707574233 44.586 0.13717 44.586 44.472 44.61 0 9 6 2 0 0 0 0.33553 1 24260 24260 25.399 4.9457 1 3331600 + 47920 27615 32307 33050 55881 55881 0.09409770405375184 PVAPVFRMWYW 11 Unmodified _PVAPVFRMWYW_ 0 0 0 ENST00000308511.8_1_8:22477609-22477870:+|nuORF ENST00000308511.8_1_8:22477609-22477870:+|nuORF ENST00000308511.8_1_8:22477609-22477870:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2716369628906 3 484.581276 1450.722 0.88731 0.00042997 1.3944 0.00067572 2.2817 0.0011057 484.5817466621606 57.209 0.31952 57.143 56.978 57.297 -0.066036 45 15 4 0 0 0 0.30533 1 31175 31175 1.4551 0.67859 1 12916000 47921 11655 32308 33051 55882 55882 0.01466588721723383 PVAQARVPRHD 11 Unmodified _PVAQARVPRHD_ 0 0 0 ENST00000414490.5_3_2:203782748-203806586:+|nuORF ENST00000414490.5_3_2:203782748-203806586:+|nuORF ENST00000414490.5_3_2:203782748-203806586:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 623.34814453125 2 623.344178 1244.6738 NaN NaN NaN NaN NaN NaN NaN 54.957 1 49.092 48.592 49.592 -5.8653 0 0 0 0.64135 1 34924 34924 19.257 1.1106 1 47922 13012 32309 33052 55883 55883 0.061252311260204806 PVASVLPF 8 Unmodified _PVASVLPF_ 0 0 0 REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.244140625 2 415.244547 828.47454 0.15942 6.6199E-05 -0.44377 -0.00018428 -0.28435 -0.00011808 415.2440343792767 74.187 0.51437 74.231 73.985 74.499 0.043976 40 22 2 0 0 0 0.35156 1 40852 40852 49.669 0 1 2628500 + 47923 28315 32310 33053 55884 55884 0.05344202845435575 PVATSTIL 8 Unmodified _PVATSTIL_ 0 0 0 REV__nc|ENSG00000237621|Q8NGU1|OR9A1P REV__nc|ENSG00000237621|Q8NGU1|OR9A1P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2396545410156 2 401.239461 800.46437 -0.08093 -3.2472E-05 0.46448 0.00018637 0.38355 0.0001539 401.23962309353465 35.807 0.16387 35.807 35.694 35.858 0 11 7 2 0 0 0 0.67481 1 18948 18948 19.439 1.304 1 1695000 + 47924 29960 32311 33054 55885 55885 0.05615595120195849 PVATSTIL 8 Unmodified _PVATSTIL_ 0 0 0 REV__nc|ENSG00000237621|Q8NGU1|OR9A1P REV__nc|ENSG00000237621|Q8NGU1|OR9A1P MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 401.239461 800.46437 -0.08093 -3.2472E-05 0.46448 0.00018637 0.38355 0.0001539 401.23962309353465 35.807 0.16387 35.807 35.694 35.858 0 0 0 NaN 19.439 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1695000 + 47925 29960 32311 33054 0.05615595120195849 PVATVKYT 8 Unmodified _PVATVKYT_ 0 0 0 ENSG00000182333|ENST00000238983|LIPF;nc|ENSG00000182333|P07098-3|LIPF;nc|ENSG00000182333|P07098-2|LIPF;nc|ENSG00000182333|P07098-4|LIPF ENSG00000182333|ENST00000238983|LIPF ENSG00000182333|ENST00000238983|LIPF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.7530212402344 2 439.752736 877.490919 NaN NaN NaN NaN NaN NaN NaN 63.298 1 63.298 62.798 63.798 0 0 0 0 0.85111 1 35307 35307 20.871 5.024 1 47926 9048 32312 33055 55886 55886 0.04727284011505617 PVAVFTVRT 9 Unmodified _PVAVFTVRT_ 0 0 0 REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|62|1|anti-sense REV__THE1B-int_dup2014|chr7:17393836-17395404:-|1.1343826258470706|0.2678596597550775|2.08|174.0|62|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2919006347656 2 495.292559 988.570566 NaN NaN NaN NaN NaN NaN NaN 72.198 1 72.198 71.698 72.698 0 0 0 0 0.70111 1 40203 40203 9.3474 0 1 + 47927 30114 32313 33056 55887 55887 0.07582350685515848 PVAWHSKNL 9 Unmodified _PVAWHSKNL_ 0 0 0 ENST00000417723.1_1_3:11874583-11886385:-|nuORF;ENST00000494388.1_1_3:11885478-11888134:-|nuORF;nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41 ENST00000417723.1_1_3:11874583-11886385:-|nuORF ENST00000417723.1_1_3:11874583-11886385:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7870483398438 2 526.287808 1050.56106 0.93181 0.0004904 0.074992 3.9467E-05 1.0068 0.00052987 526.2883093990562 51.361 0.38427 45.712 45.479 45.863 -5.649 34 23 2 0 0 0 0.18941 1 32274 32274 14.582 8.2276 1 48485000 47928 5619 32314 33057 55888 55888 0.03780582399986088 PVCDHPDTAF 10 Unmodified _PVCDHPDTAF_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2365112304688 2 551.237124 1100.45969 0.27528 0.00015174 -0.28463 -0.0001569 -0.009355 -5.1568E-06 551.2370024257073 70.043 0.25507 70.043 69.998 70.253 0 57 36 2 0 0 0 0.68719 1 39008 39008 4.3292 0 1 6812000 47929 2457 32315 33058 55889 55889 -0.08651657084897124 PVCDPSDIV 9 Unmodified _PVCDPSDIV_ 0 0 0 REV__ENSG00000198753|ENST00000361971|PLXNB3 REV__ENSG00000198753|ENST00000361971|PLXNB3 MSMS AL20221201_MKP_PDAC_01 4 472.7250366210938 2 472.723318 943.432083 NaN NaN NaN NaN NaN NaN NaN 40.288 1 35.758 35.258 36.258 -4.5294 0 0 0 0.46757 1 24044 24044 16.942 3.4344 1 + 47930 24053 32316 33059 55890 55890 -0.041895603451280294 PVCGHNGETY 10 Unmodified _PVCGHNGETY_ 0 0 0 ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK ENSG00000122707|ENST00000377966|RECK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2559814453125 2 538.726923 1075.43929 0.82454 0.0004442 -3.0933 -0.0016665 -2.2688 -0.0012223 538.7243840076825 51.349 0.3254 51.349 51.15 51.475 0 28 14 3 0 0 0 0.23117 1 28400 28400 11.64 6.4096 1 3090000 47931 3656 32317 33060 55891 55891 -0.09540827744672242 PVCRLRTL 8 Unmodified _PVCRLRTL_ 0 0 0 nc|ENSG00000142405|P59046-5|NLRP12;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 nc|ENSG00000142405|P59046-5|NLRP12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7668762207031 2 479.286754 956.558955 1.0185 0.00048816 -3.4424 -0.0016499 -2.4239 -0.0011617 479.285322361844 80.399 0.20462 79.91 79.779 79.984 -0.48932 11 7 2 0 0 0 8.7369 1 44021 44021 10.183 0 1 179630 47932 16235 32318 33061 55892 55892 0.07893830390548828 PVCTWTHKVY 10 Unmodified _PVCTWTHKVY_ 0 0 0 REV__ENST00000218758.9_1_19:11685532-11685814:-|nuORF REV__ENST00000218758.9_1_19:11685532-11685814:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.7606201171875 2 617.307884 1232.60121 0.36875 0.00022763 0.53373 0.00032947 0.90248 0.00055711 617.3081476571274 58.76 0.43575 58.76 58.441 58.877 0 26 18 2 0 0 0 0.23566 1 32557 32557 7.2892 2.96 1 8271400 + 47933 24751 32319 33062 55893 55893 -0.005782389917385444 PVDCPVRSKL 10 Unmodified _PVDCPVRSKL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3125610351562 2 557.307884 1112.60121 0.10777 6.0059E-05 0.18356 0.0001023 0.29132 0.00016236 557.3060312762008 60.58 0.15866 60.091 60.03 60.189 -0.48932 17 7 3 0 0 0 0.5905 1 33013 33013 11.64 0 1 2718600 47934 8367 32320 33063 55894 55894 0.049417610082628016 PVDDAQEIL 9 Unmodified _PVDDAQEIL_ 0 0 0 ENSG00000100934|ENST00000307712|SEC23A;nc|ENSG00000100934|Q15436-2|SEC23A;ENST00000554615.1_1_14:39509818-39510055:-|nuORF ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2519836425781 2 500.253297 998.492041 0.36093 0.00018056 0.049419 2.4722E-05 0.41035 0.00020528 500.2526943076291 80.046 0.38516 80.046 79.911 80.296 0 26 20 2 0 0 0 0.49272 1 44450 44450 7.9102 0.62092 1 826860 47935 1893 32321 33064 55895 55895 -0.007265464102374608 PVDDMRHSIF 10 Unmodified _PVDDMRHSIF_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7906494140625 2 608.792598 1215.57064 NaN NaN NaN NaN NaN NaN NaN 46.22 1 46.22 45.72 46.72 0 0 0 0 0.81521 1 25250 25250 11.64 3.7301 1 + 47936 18337 32322 33065 55896 55896 -0.028520173767901724 PVDETGWVI 9 Unmodified _PVDETGWVI_ 0 0 0 ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584228515625 2 508.258382 1014.50221 0.37656 0.00019139 0.14728 7.4855E-05 0.52384 0.00026625 508.2582737020268 79.773 0.54874 79.773 79.5 80.048 0 60 25 3 0 0 0 0.48152 1 44420 44420 8.5933 0.68312 1 2575800 47937 1654 32323 33066 55897 55897 -0.004459386849816838 PVDEVSITY 9 Unmodified _PVDEVSITY_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7560119628906 2 511.755672 1021.49679 0.21569 0.00011038 -0.4424 -0.0002264 -0.22671 -0.00011602 511.75536986816303 61.776 0.40331 61.776 61.548 61.951 0 36 17 3 0 0 0 0.078417 1 34403 34403 38.151 2.107 1 4425100 47938 3658 32324 33067 55898 55898 -0.013096622674765968 PVDFHIKM 8 Oxidation (M) _PVDFHIKM(Oxidation (M))_ PVDFHIKM(1) PVDFHIKM(60) 0 0 1 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7574768066406 2 501.757495 1001.50044 0.48688 0.00024429 1.0883 0.00054606 1.5752 0.00079035 501.75805912211194 47.721 0.18716 47.682 47.64 47.827 -0.038643 14 8 2 0 0 0 0.26367 1 25733 25733 60.074 31.587 1 1781000 47939 1814 32325 33068 55899 55899 303 -0.0002527097459505967 PVDFWALYNHI 11 Unmodified _PVDFWALYNHI_ 0 0 0 ENST00000422311.1_1_20:5529653-5529806:+|nuORF ENST00000422311.1_1_20:5529653-5529806:+|nuORF ENST00000422311.1_1_20:5529653-5529806:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 687.846435546875 2 687.845687 1373.67682 NaN NaN NaN NaN NaN NaN NaN 95.133 1 88.957 88.457 89.457 -6.1757 0 0 0 0.77961 1 63010 63010 13.042 1.5478 1 47940 13116 32326 33069 55900 55900 0.0049306146017897845 PVDHRGRGL 9 Unmodified _PVDHRGRGL_ 0 0 0 REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF REV__ENST00000500800.2_1_4:144435011-144435338:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7810363769531 2 503.780682 1005.54681 -0.50856 -0.0002562 -1.6783 -0.00084551 -2.1869 -0.0011017 503.77880255891495 69.96 0.36562 69.481 69.203 69.568 -0.47903 34 16 3 0 0 0 0.48152 1 38165 38165 8.5933 0 1 1501100 + 47941 28009 32327 33070 55901 55901 0.04425929971716869 PVDHSGVVPF 10 Unmodified _PVDHSGVVPF_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2757568359375 2 527.271824 1052.5291 0.19745 0.00010411 1.5661 0.00082577 1.7636 0.00092988 527.2725384455981 58.838 0.32118 58.347 58.193 58.514 -0.49079 36 15 3 0 0 0 0.50944 1 31952 31952 15.847 1.9411 1 5725000 47942 6956 32328 33071 55902 55902 0.0049316992619878874 PVDINTPAL 9 Unmodified _PVDINTPAL_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2;ENST00000593460.1_1_19:18119399-18119966:+|nuORF nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2604370117188 2 470.260925 938.507297 0.13792 6.4858E-05 -0.82659 -0.00038871 -0.68867 -0.00032386 470.26031041337615 70.286 0.21529 69.807 69.653 69.869 -0.47903 15 9 2 0 0 0 0.43463 1 38458 38458 10.824 0.75 1 889540 47943 2345 32329 33072 55903 55903 0.035583651776164515 PVDKPGPSI 9 Unmodified _PVDKPGPSI_ 0 0 0 REV__ENSG00000076356|ENST00000367033|PLXNA2 REV__ENSG00000076356|ENST00000367033|PLXNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.255859375 2 455.255643 908.496732 0.40252 0.00018325 -0.52093 -0.00023716 -0.11841 -5.3908E-05 455.25544986381016 46.909 0.49295 46.909 46.656 47.149 0 53 23 3 0 0 0 0.0090948 1 25590 25590 85.272 3.3818 1 9167600 + 47944 17589 32330 33073 55904 55904 0.03882382523192973 PVDLAGFPVL 10 Unmodified _PVDLAGFPVL_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2938232421875 2 514.294768 1026.57498 0.38923 0.00020018 -1.8757 -0.00096466 -1.4865 -0.00076448 514.294055637748 99.882 0.19606 93.707 93.623 93.819 -6.1757 20 14 2 0 0 0 0.2829 1 66640 66640 28.487 0 1 22801000 47945 4198 32331 33074 55905 55905 0.0627581510843811 PVDLGVPSLF 10 Unmodified _PVDLGVPSLF_ 0 0 0 REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.294677734375 2 522.292225 1042.5699 0.38147 0.00019924 1.3797 0.0007206 1.7612 0.00091984 522.2933713384573 87.348 0.28434 86.844 86.708 86.992 -0.50423 19 11 2 0 0 0 0.60623 1 47811 47811 10.824 4.4698 1 798100 + 47946 28496 32332 33075 55906 55906 0.05031511245783804 PVDLSGVYK 9 Unmodified _PVDLSGVYK_ 0 0 0 REV__nc|ENSG00000198929|O75052-3|NOS1AP REV__nc|ENSG00000198929|O75052-3|NOS1AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2773132324219 2 489.26875 976.522947 -0.095869 -4.6906E-05 1.2715 0.00062212 1.1757 0.00057522 489.26908986126097 33.346 0.52325 33.187 32.984 33.507 -0.15918 86 21 5 0 0 0 0.45045 1 17554 17554 10.074 0.72649 1 85608000 + 47947 24101 32333 33076 55907 55907 0.03374651694662134 PVDLVDVP 8 Unmodified _PVDLVDVP_ 0 0 0 REV__ENST00000464251.5_1_X:148568821-148584844:-|nuORF REV__ENST00000464251.5_1_X:148568821-148584844:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2357177734375 2 427.236919 852.459284 0.11154 4.7656E-05 -0.91229 -0.00038977 -0.80075 -0.00034211 427.23645255616555 80.038 0.36134 80.038 79.819 80.18 0 34 19 2 0 0 0 0.5953 1 44499 44499 26.341 5.4701 1 1290200 + 47948 17048 32334 33077 55908 55908 0.02715291257561603 PVDSIANSG 9 Unmodified _PVDSIANSG_ 0 0 0 REV__nc|ENSG00000081237|P08575-7|PTPRC REV__nc|ENSG00000081237|P08575-7|PTPRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2121276855469 2 430.211432 858.408311 1.6819 0.00072358 -0.23061 -9.9212E-05 1.4513 0.00062437 430.2116559901265 105.44 0.12513 99.261 99.218 99.343 -6.1757 66 26 3 0 0 0 0.55775 1 70698 70698 3.9444 1.3669 1 37996000 + 47949 17688 32335 33078 55909 55909 -0.02655657787272503 PVDSKWLGHFY 11 Unmodified _PVDSKWLGHFY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.56201171875 3 450.227667 1347.66117 0.73375 0.00033035 -0.40503 -0.00018236 0.32872 0.000148 450.5617319950366 62.81 0.2486 62.789 62.678 62.927 -0.021614 26 12 3 0 0 0 0.036454 1 34353 34353 49.742 30.116 1 4979100 47950 4028 32336 33079 55910 55910 0.0012477494315135118 PVDSKWLGHFY 11 Unmodified _PVDSKWLGHFY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MSMS AL20221201_MKP_PDAC_01 4 674.837646484375 2 674.837862 1347.66117 NaN NaN NaN NaN NaN NaN NaN 84.56 1 78.384 77.884 78.884 -6.1757 0 0 0 4.6516000000000005E-45 1 55639 55639 174.48 139.55 1 47951 4028 32336 33079 55911 55911 0.0012477494315135118 PVDTLITYL 9 Unmodified _PVDTLITYL_ 0 0 0 nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7928466796875 2 517.792058 1033.56956 0.62978 0.0003261 0.97425 0.00050446 1.604 0.00083056 517.7925216317462 74.123 0.32463 73.647 73.469 73.794 -0.47588 31 13 3 0 0 0 0.052168 1 40548 40548 44.407 0 1 2193300 47952 2968 32337 33080 55912 55912 0.05412091525931828 PVDTLITYL 9 Unmodified _PVDTLITYL_ 0 0 0 nc|ENSG00000113448|Q08499-5|PDE4D;nc|ENSG00000113448|Q08499-8|PDE4D;nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant;ENSG00000113448|ENST00000340635|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D nc|ENSG00000113448|Q08499-5|PDE4D MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7906494140625 2 517.792058 1033.56956 0.76559 0.00039641 -1.4437 -0.00074756 -0.67816 -0.00035115 517.7906652605628 81.901 0.41846 75.725 75.532 75.951 -6.1757 37 23 2 0 0 0 0.052168 1 53782 53782 44.407 0 1 14081000 47953 2968 32337 33080 55913 55913 0.05412091525931828 PVDTLPAL 8 Unmodified _PVDTLPAL_ 0 0 0 ENST00000367021.7_1_1:209974702-209979388:-|nuORF ENST00000367021.7_1_1:209974702-209979388:-|nuORF ENST00000367021.7_1_1:209974702-209979388:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2381591796875 2 413.239461 824.46437 NaN NaN NaN NaN NaN NaN NaN 76.954 1 76.954 76.454 77.454 0 0 0 0 0.59893 1 42779 42779 34.187 0 1 47954 12218 32338 33081 55914 55914 0.04511595120175116 PVDTNTYSVH 10 Unmodified _PVDTNTYSVH_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.27001953125 2 566.767103 1131.51965 1.1276 0.00063911 -2.6357 -0.0014938 -1.508 -0.00085469 566.7657311510948 80.037 0.47221 73.862 73.612 74.085 -6.1757 38 28 2 0 0 0 0.16163 1 52477 52477 24.021 0 1 36715000 + 47955 20685 32339 33082 55915 55915 -0.0408464315000856 PVDTSRHIL 9 Unmodified _PVDTSRHIL_ 0 0 0 REV__ENST00000446571.7_2_17:42268247-42268439:+|nuORF REV__ENST00000446571.7_2_17:42268247-42268439:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.8118896484375 2 519.290548 1036.56654 0.21096 0.00010955 -0.73118 -0.00037969 -0.52022 -0.00027014 519.290436646159 59.011 0.38068 58.52 58.348 58.729 -0.49079 29 17 2 0 0 0 0.19891 1 32156 32156 7.2892 0 1 1540500 + 47956 27144 32340 33083 55916 55916 0.04972261191801408 PVDVAMRLCL 10 Unmodified _PVDVAMRLCL_ 0 0 0 ENSG00000119938|ENST00000238994|PPP1R3C ENSG00000119938|ENST00000238994|PPP1R3C ENSG00000119938|ENST00000238994|PPP1R3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3037109375 2 558.798837 1115.58312 1.3191 0.0007371 1.1114 0.00062102 2.4304 0.0013581 558.8003680443702 89.17 1.4737 82.995 82.494 83.968 -6.1757 145 82 3 0 0 0 0.42068 1 59491 59491 20.454 5.8719 1 22758000 47957 3482 32341 33084 55917 55917 0.029953027618830674 PVDVLDVP 8 Unmodified _PVDVLDVP_ 0 0 0 nc|ENSG00000241489|P22304-3|IDS;nc|ENSG00000241489|P22304-2|IDS;ENSG00000010404|ENST00000340855|IDS;ENST00000464251.5_1_X:148568821-148584844:-|nuORF nc|ENSG00000241489|P22304-3|IDS nc|ENSG00000241489|P22304-3|IDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2364807128906 2 427.236919 852.459284 0.11154 4.7656E-05 -0.91229 -0.00038977 -0.80075 -0.00034211 427.23645255616555 80.038 0.36134 80.038 79.819 80.18 0 34 19 2 0 0 0 0.72953 1 44399 44399 14.582 0 1 1290200 47958 423 32342 33085 55918 55918 0.02715291257561603 PVDVLYPY 8 Unmodified _PVDVLYPY_ 0 0 0 ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL ENST00000533086.5_1_19:15228578-15234387:-|nuORF ENST00000533086.5_1_19:15228578-15234387:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2155456542969 2 483.252569 964.490584 -0.47892 -0.00023144 0.086636 4.1867E-05 -0.39229 -0.00018957 483.2527340366839 27.534 0.18969 27.534 27.469 27.659 0 13 8 2 0 0 0 8.7369 1 14153 14153 6.3541 6.3541 1 1392200 47959 2278 32343 33086 55919 55919 0.006918642916502904 PVDWSLIVS 9 Unmodified _PVDWSLIVS_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7608337402344 2 508.276575 1014.5386 0.50676 0.00025758 -1.9997 -0.0010164 -1.493 -0.00075884 508.27612668080747 85.708 0.55159 79.533 79.277 79.829 -6.1757 53 31 2 0 0 0 0.11012 1 56317 56317 21.747 0 1 44520000 + 47960 21279 32344 33087 55920 55920 0.03190938211719185 PVEAHRWL 8 Unmodified _PVEAHRWL_ 0 0 0 SACS|p.R4448H|1|0.14|ENSG00000151835|chr13:23330533-23330533|C/T|missense_variant SACS|p.R4448H|1|0.14|ENSG00000151835|chr13:23330533-23330533|C/T|missense_variant SACS|p.R4448H|1|0.14|ENSG00000151835|chr13:23330533-23330533|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2746887207031 2 504.274701 1006.53485 NaN NaN NaN NaN NaN NaN NaN 83.345 1 82.847 82.347 83.347 -0.49751 0 0 0 0.97444 1 45623 45623 2.8892 0.31174 1 47961 30155 32345 33088 55921 55921 0.031843132285075626 PVEAKQEDSPF 11 Unmodified _PVEAKQEDSPF_ 0 0 0 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 ENSG00000136383|ENST00000258888|ALPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8016357421875 2 623.801143 1245.58773 0.56159 0.00035032 -1.3542 -0.00084473 -0.79257 -0.00049441 623.8003554507485 57.632 0.30399 57.632 57.49 57.794 0 28 15 2 0 0 0 0.6249 1 32035 32035 10.074 0 1 8406900 47962 4819 32346 33089 55922 55922 -0.025238182900011452 PVEALAPLYL 10 Unmodified _PVEALAPLYL_ 0 0 0 REV__ENST00000590258.2_2_18:34359160-34359487:-|nuORF REV__ENST00000590258.2_2_18:34359160-34359487:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.2129821777344 3 362.546226 1084.61685 1.9051 0.00069069 0.01057 3.8321E-06 1.9157 0.00069452 362.54656091769505 54.08 0.16447 48.215 48.118 48.283 -5.8653 12 8 2 0 0 0 0.23675 1 34242 34242 4.1895 1.4543 1 7377800 + 47963 29147 32347 33090 55923 55923 0.07792370796937576 PVEDCVQSTL 10 Unmodified _PVEDCVQSTL_ 0 0 0 nc|ENSG00000165801|Q8TER5-4|ARHGEF40;nc|ENSG00000165801|Q8TER5-3|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40;ENST00000555232.5_1_14:21538555-21549271:+|nuORF nc|ENSG00000165801|Q8TER5-4|ARHGEF40 nc|ENSG00000165801|Q8TER5-4|ARHGEF40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7593994140625 2 545.757889 1089.50123 0.24056 0.00013129 1.7945 0.00097938 2.0351 0.0011107 545.7588374119896 41.419 0.51507 36.811 36.547 37.062 -4.6079 60 33 2 0 0 0 0.35903 1 24852 24852 24.021 0 1 18608000 47964 7388 32348 33091 55924 55924 -0.03994521116192118 PVEDELPIK 9 Unmodified _PVEDELPIK_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3 REV__nc|ENSG00000170004|Q12873-3|CHD3 MSMS AL20221201_MKP_PDAC_01 4 520.7573852539062 2 520.28714 1038.55973 NaN NaN NaN NaN NaN NaN NaN 46.657 1 41.577 41.077 42.077 -5.0805 0 0 0 0.50124 1 28865 28865 15.847 4.2069 1 + 47965 29773 32349 33092 55925 55925 0.0419890352056882 PVEDKDAVAF 10 Unmodified _PVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.77490234375 2 545.774396 1089.53424 0.43858 0.00023936 -0.35315 -0.00019274 0.085431 4.6626E-05 545.7740994926932 38.333 0.21 38.333 38.248 38.458 0 33 20 2 0 0 0 0.031932 1 20462 20462 67.081 32.679 1 8415400 47966 2314;1437;3789;1275 32350 33093 55926 55926 -0.006945710018726459 PVEDKDAVAF 10 Unmodified _PVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.775390625 2 545.774396 1089.53424 -0.22465 -0.00012261 0.16271 8.8802E-05 -0.061939 -3.3805E-05 545.7749493524534 40.813 0.24086 40.813 40.72 40.961 0 39 29 2 0 0 0 0.031932 1 21944 21944 67.081 32.679 1 24218000 47967 2314;1437;3789;1275 32350 33093 55927 55927 -0.006945710018726459 PVEDKDAVAF 10 Unmodified _PVEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS AL20221201_MKP_PDAC_01 4 545.7750244140625 2 545.774396 1089.53424 NaN NaN NaN NaN NaN NaN NaN 43.444 1 38.679 38.179 39.179 -4.7648 0 0 0 0.28787 1 26392 26392 37.771 1.7271 1 47968 2314;1437;3789;1275 32350 33093 55928 55928 -0.006945710018726459 PVEECRGCAEL 11 Unmodified _PVEECRGCAEL_ 0 0 0 REV__nc|ENSG00000104524|Q53H96-2|PYCR3 REV__nc|ENSG00000104524|Q53H96-2|PYCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.5144653320312 3 402.514491 1204.52164 0.18013 7.2506E-05 -0.42908 -0.00017271 -0.24895 -0.00010021 402.514399315418 38.244 0.65201 38.244 37.925 38.577 0 148 43 4 0 0 0 0.71341 1 20566 20566 1.2148 0 1 125080000 + 47969 18363 32351 33094 55929 55929 -0.07243673728044087 PVEEEEEESGS 11 Unmodified _PVEEEEEESGS_ 0 0 0 REV__nc|ENSG00000071054|O95819-4|MAP4K4 REV__nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7440185546875 2 610.743687 1219.47282 1.2162 0.00074276 -0.43093 -0.00026319 0.78523 0.00047958 610.7435019672407 64.607 0.65631 58.431 58.167 58.823 -6.1757 98 36 3 0 0 0 0.68427 1 41857 41857 5.7319 1.7875 1 66747000 + 47970 29503 32352 33095 55930 55930 -0.12813592282464015 PVEEFNELL 9 Unmodified _PVEEFNELL_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2776489257812 2 545.276772 1088.53899 -0.010754 -5.864E-06 0.15681 8.5502E-05 0.14605 7.9638E-05 545.2762801460052 70.505 0.53273 70.505 70.28 70.812 0 68 33 4 0 0 0 0.010818 1 39298 39298 78.149 3.7266 1 12328000 47971 1350 32353 33096 55931 55931 -0.0017368685910241766 PVEFFQEL 8 Unmodified _PVEFFQEL_ 0 0 0 ENST00000602063.5_1_19:52507122-52511283:-|nuORF ENST00000602063.5_1_19:52507122-52511283:-|nuORF ENST00000602063.5_1_19:52507122-52511283:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1009.987426757812 1 1008.50367 1007.4964 -0.4717 -0.00047571 -0.70418 -0.00071017 -1.1759 -0.0011859 1008.5010936288929 77.109 0.18098 76.626 76.517 76.698 -0.4826 10 7 2 0 0 0 0.80676 1 42193 42193 2.5775 0.27475 1 379130 47972 15813 32354 33097 55932 55932 -0.007050371966556668 PVEFTTVP 8 Unmodified _PVEFTTVP_ 0 0 0 REV__ENSG00000099715|ENST00000698851|PCDH11Y REV__ENSG00000099715|ENST00000698851|PCDH11Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 889.4678344726562 1 889.466561 888.459284 0.086306 7.6767E-05 -0.69598 -0.00061905 -0.60968 -0.00054229 889.4658240686363 75.369 0.43005 74.892 74.696 75.126 -0.47714 40 23 2 0 0 0 0.44122 1 41202 41202 40.449 0 1 2061600 + 47973 17982 32355 33098 55933 55933 0.010592912575589253 PVEGTLMLV 9 Unmodified _PVEGTLMLV_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.725341796875 1 958.527781 957.520504 -0.035896 -3.4408E-05 -2.4788 -0.002376 -2.5147 -0.0024104 958.5246951920503 79.854 0.24747 79.854 79.729 79.977 0 15 10 2 0 0 0 0.5029 1 44311 44311 7.2892 1.5288 1 468860 + 47974 21753 32356 33099 55934 55934 0.04004479965351493 PVEHPDKF 8 Unmodified _PVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7454223632812 2 484.745442 967.476331 -0.2244 -0.00010878 0.55348 0.00026829 0.32907 0.00015952 484.74552350944475 29.065 0.23862 29.065 28.943 29.182 0 26 11 3 0 0 0 0.08919 1 15047 15047 103.35 51.085 1 5497500 47975 7318 32357 33100 55935 55935 -0.008707881366262882 PVEHPDKF 8 Unmodified _PVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7463989257812 2 484.745442 967.476331 0.7907 0.00038329 1.1091 0.00053762 1.8998 0.00092091 484.74526241327953 32.652 0.37934 28.796 28.582 28.961 -3.8562 32 19 2 0 0 0 0.071044 1 18609 18609 122.18 61.79 1 11270000 47976 7318 32357 33100 55936 55936 -0.008707881366262882 PVEKETLD 8 Unmodified _PVEKETLD_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7435913085938 2 465.742565 929.470577 NaN NaN NaN NaN NaN NaN NaN 23.224 1 23.224 22.724 23.724 0 0 0 0 0.95254 1 11832 11832 10.074 2.7847 1 + 47977 24045 32358 33101 55937 55937 0.0030206856106360647 PVEKIDTML 9 Unmodified _PVEKIDTML_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87121966-87144635:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.785400390625 2 523.283543 1044.55253 0.51636 0.0002702 0.035838 1.8753E-05 0.5522 0.00028896 523.2835557900488 49.351 0.29854 48.974 48.793 49.091 -0.37776 29 14 3 0 0 0 0.19127 1 26527 26527 24.021 3.606 1 4023800 47978 6239 32359 33102 55938 55938 0.03203847648478586 PVEKIDTML 9 Unmodified _PVEKIDTML_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87121966-87144635:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2869873046875 2 523.283543 1044.55253 0.19785 0.00010353 0.84231 0.00044077 1.0402 0.0005443 523.2841855257612 48.989 0.32827 48.945 48.867 49.195 -0.04369 27 15 3 0 0 0 0.28023 1 26482 26482 18.146 0.011366 1 1647800 47979 6239 32359 33102 55939 55939 0.03203847648478586 PVEKIDTML 9 Unmodified _PVEKIDTML_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000426186.1_3_2:87121966-87144635:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 ENSG00000153107|ENST00000341068|ANAPC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.7325439453125 2 523.283543 1044.55253 1.2166 0.00063663 -0.59761 -0.00031272 0.61899 0.00032391 523.2833336657766 55.213 0.73116 49.292 48.956 49.688 -5.9211 145 45 4 0 0 0 0.12183 1 34902 34902 26.884 6.43 1 827880000 47980 6239 32359 33102 55940 55940 0.03203847648478586 PVEKKAVG 8 Unmodified _PVEKKAVG_ 0 0 0 ENSG00000168070|ENST00000301896|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN;nc|ENSG00000168070|Q3KP22-4|MAJIN ENSG00000168070|ENST00000301896|MAJIN ENSG00000168070|ENST00000301896|MAJIN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8514099121094 2 414.252903 826.491253 -0.61974 -0.00025673 1.0919 0.00045233 0.47219 0.0001956 414.2534490603198 26.619 0.27148 26.619 26.448 26.719 0 20 12 2 0 0 0 8.7369 1 13692 13692 23.148 0 1 824920 47981 7715 32360 33103 55941 55941 0.07106703731381003 PVEKLPKY 8 Unmodified _PVEKLPKY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;nc|ENSG00000144028|O75643-2|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2886657714844 2 487.289485 972.564418 0.22794 0.00011107 0.32972 0.00016067 0.55766 0.00027174 487.28934317377036 39.842 0.17845 39.545 39.471 39.649 -0.29716 10 8 2 0 0 0 0.31379 1 21054 21054 53.833 19.73 1 1039400 47982 5575 32361 33104 55942 55942 0.07703832454001258 PVELKEDKF 9 Unmodified _PVELKEDKF_ 0 0 0 REV__ENSG00000176248|ENST00000323927|ANAPC2 REV__ENSG00000176248|ENST00000323927|ANAPC2 MSMS AL20221201_MKP_PDAC_01 4 552.7996826171875 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 68.546 1 62.37 61.87 62.87 -6.1757 0 0 0 0.6306 1 44749 44749 11.64 0.81637 1 + 47983 22920 32362 33105 55943 55943 0.03862592411906007 PVELNCNFSF 10 Unmodified _PVELNCNFSF_ 0 0 0 ENSG00000089775|ENST00000608382|ZBTB25 ENSG00000089775|ENST00000608382|ZBTB25 ENSG00000089775|ENST00000608382|ZBTB25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.263916015625 2 585.268424 1168.5223 0.19897 0.00011645 -4.313 -0.0025242 -4.114 -0.0024078 585.2662443027532 66.997 0.27487 66.513 66.294 66.569 -0.48323 17 12 2 0 0 0 0.69064 1 36556 36556 3.9444 1.6417 1 977010 47984 1537 32363 33106 55944 55944 -0.05522511016692988 PVEMMDDEQ 9 Unmodified _PVEMMDDEQ_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.21484375 2 547.212457 1092.41036 NaN NaN NaN NaN NaN NaN NaN 40.95 1 40.95 40.45 41.45 0 0 0 0 0.82396 1 22049 22049 4.756 0.42677 1 + 47985 21984 32364 33107 55945 55945 -0.13214733155996328 PVENKEVY 8 Unmodified _PVENKEVY_ 0 0 0 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 ENSG00000173276|ENST00000310826|ZBTB21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2506713867188 2 489.250557 976.486562 0.56527 0.00027656 -1.0275 -0.00050272 -0.46226 -0.00022616 489.2499495082164 55.381 0.29553 54.903 54.753 55.048 -0.47798 20 13 2 0 0 0 0.80232 1 30032 30032 5.2307 0 1 1286100 47986 8311 32365 33108 55946 55946 -0.002622252020501037 PVEPKKPPAL 10 Unmodified _PVEPKKPPAL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3294677734375 2 538.329142 1074.64373 -0.31872 -0.00017158 0.18869 0.00010158 -0.13004 -7.0002E-05 538.329277334711 78.492 0.27809 78.006 77.911 78.189 -0.48596 22 12 3 0 0 0 0.55245 1 42997 42997 21.747 0.20967 1 933430 + 47987 21279 32366 33109 55947 55947 0.10939479408125408 PVESAMELKE 10 Unmodified _PVESAMELKE_ 0 0 0 nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 nc|ENSG00000149474|Q9H8E8-2|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2828979492188 2 566.781364 1131.54818 0.53679 0.00030424 0.62429 0.00035383 1.1611 0.00065808 566.7815953757937 96.615 0.31335 96.31 96.16 96.473 -0.30472 43 17 3 0 0 0 0.69377 1 52727 52727 3.5965 0.60125 1 1322200 47988 6008 32367 33110 55948 55948 -0.012336615650610838 PVESSREKTVE 11 Unmodified _PVESSREKTVE_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8236694335938 2 630.825149 1259.63574 0.058288 3.6769E-05 -2.4883 -0.0015697 -2.43 -0.0015329 630.8237221028864 101.75 0.087997 101.63 101.59 101.68 -0.11613 8 3 3 0 0 0 0.46578 1 55532 55532 18.146 9.4009 1 1381800 + 47989 22517 32368 33111 55949 55949 0.016312556300590586 PVESSREKTVE 11 Unmodified _PVESSREKTVE_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8228759765625 2 630.825149 1259.63574 0.68604 0.00043277 -1.409 -0.00088884 -0.72297 -0.00045607 631.3258863716901 102.13 0.10081 95.95 95.877 95.978 -6.1757 7 4 2 0 0 0 0.46578 1 68549 68549 18.146 1.9972 1 8710200 + 47990 22517 32368 33111 55950 55950 0.016312556300590586 PVESSREKTVE 11 Unmodified _PVESSREKTVE_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 630.825149 1259.63574 0.16344 0.0001031 -2.5033 -0.0015791 -2.3398 -0.001476 630.8236156292861 101.73 0.10583 101.73 101.66 101.77 0 0.046567 -3.253E-06 NaN 18.146 11 4 4 NaN NaN NaN NaN 0 NaN NaN 0 1414600 + 47991 22517 32368 33111 0.016312556300590586 PVESSREKTVE 11 Unmodified _PVESSREKTVE_ 0 0 0 REV__ENSG00000170871|ENST00000307659|KIAA0232 REV__ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 630.825149 1259.63574 0.058288 3.6769E-05 -2.4883 -0.0015697 -2.43 -0.0015329 630.8237221028864 101.75 0.087997 101.63 101.59 101.68 -0.11613 -0.046567 1.5679E-05 NaN 18.146 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 1381800 + 47992 22517 32368 33111 0.016312556300590586 PVETEHSVPED 11 Unmodified _PVETEHSVPED_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5216979980469 3 413.522697 1237.54626 NaN NaN NaN NaN NaN NaN NaN 24.579 1 24.579 24.079 25.079 0 0 0 0 0.93984 1 12566 12566 2.6312 0.72486 1 47993 5688 32369 33112 55951 55951 -0.06300999049335587 PVETTYNY 8 Unmodified _PVETTYNY_ 0 0 0 nc|ENSG00000137261|Q5VV43-4|KIAA0319;nc|ENSG00000137261|Q5VV43-3|KIAA0319;nc|ENSG00000137261|Q5VV43-2|KIAA0319;ENSG00000137261|ENST00000378214|KIAA0319 nc|ENSG00000137261|Q5VV43-4|KIAA0319 nc|ENSG00000137261|Q5VV43-4|KIAA0319 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7281494140625 2 493.726915 985.439277 NaN NaN NaN NaN NaN NaN NaN 77.492 1 77.492 76.992 77.992 0 0 0 0 0.95201 1 43079 43079 10.183 0.83596 1 47994 4917 32370 33113 55952 55952 -0.05402504473056524 PVEVESFLV 9 Unmodified _PVEVESFLV_ 0 0 0 nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1;ENST00000397090.4_1_8:38287194-38314994:-|nuORF;nc|ENSG00000077782|P11362-15|FGFR1;nc|ENSG00000077782|P11362-9|FGFR1;nc|ENSG00000077782|P11362-8|FGFR1 nc|ENSG00000077782|P11362-20|FGFR1 nc|ENSG00000077782|P11362-20|FGFR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1018.650695800781 1 1018.54554 1017.53826 0.074131 7.5506E-05 0.41016 0.00041776 0.48429 0.00049327 1018.5464615385275 74.007 0.34233 74.007 73.807 74.15 0 22 15 2 0 0 0 0.21052 1 41260 41260 6.7232 0 1 897230 47995 1227 32371 33114 55953 55953 0.03019518491873896 PVEYSHTYL 9 Unmodified _PVEYSHTYL_ 0 0 0 REV__nc|ENSG00000115425|Q9BY49-2|PECR REV__nc|ENSG00000115425|Q9BY49-2|PECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.771240234375 2 554.769114 1107.52368 0.56507 0.00031348 -1.6094 -0.00089283 -1.0443 -0.00057935 555.2686062314926 59.141 0.36031 59.141 58.924 59.285 0 37 15 4 0 0 0 0.2001 1 32972 32972 23.148 1.4018 1 3922500 + 47996 18982 32372 33115 55954 55954 -0.02578553656303484 PVFDKDVF 8 Unmodified _PVFDKDVF_ 0 0 0 REV__ENSG00000131013|ENST00000253329|PPIL4 REV__ENSG00000131013|ENST00000253329|PPIL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2498168945312 2 483.750193 965.485833 0.54322 0.00026278 -1.3803 -0.00066772 -0.83708 -0.00040494 483.7500377245896 75.904 0.6061 75.427 75.255 75.861 -0.47714 61 25 3 0 0 0 0.64853 1 41533 41533 21.747 0 1 3239000 + 47997 19761 32373 33116 55955 55955 0.0017098014890279956 PVFDKDVF 8 Unmodified _PVFDKDVF_ 0 0 0 REV__ENSG00000131013|ENST00000253329|PPIL4 REV__ENSG00000131013|ENST00000253329|PPIL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2498168945312 2 483.750193 965.485833 0.54322 0.00026278 -1.3803 -0.00066772 -0.83708 -0.00040494 483.7500377245896 75.904 0.6061 75.427 75.255 75.861 -0.47714 61 25 3 0 0 0 8.7369 1 41533 41533 21.747 0 1 3239000 + 47998 19761 32373 33116 55956 55956 0.0017098014890279956 PVFFFGVPY 9 Unmodified _PVFFFGVPY_ 0 0 0 ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7796020507812 2 536.778754 1071.54295 -0.011398 -6.1185E-06 2.5537 0.0013708 2.5423 0.0013647 536.7805053015792 44.458 0.20382 44.436 44.303 44.506 -0.022064 13 9 2 0 0 0 0.22317 1 23838 23838 20.871 1.5093 1 6666500 47999 2684 32374 33117 55957 55957 0.010044474252936197 PVFFVCLFVF 10 Unmodified _PVFFVCLFVF_ 0 0 0 ENST00000262370.11_1_16:4740157-4740412:+|nuORF ENST00000262370.11_1_16:4740157-4740412:+|nuORF ENST00000262370.11_1_16:4740157-4740412:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.324462890625 2 609.325014 1216.63547 0.48701 0.00029675 -1.2349 -0.00075247 -0.74792 -0.00045572 609.3244122155454 60.357 0.33715 60.357 60.137 60.474 0 26 14 2 0 0 0 0.46535 1 33650 33650 18.135 1.9859 1 3000900 48000 11264 32375 33118 55958 55958 0.03582209167166184 PVFGAPEI 8 Unmodified _PVFGAPEI_ 0 0 0 ENST00000601758.5_1_10:13690136-13696366:+|nuORF;ENST00000596499.5_2_10:13690166-13694463:+|nuORF ENST00000601758.5_1_10:13690136-13696366:+|nuORF ENST00000601758.5_1_10:13690136-13696366:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 831.451904296875 1 829.445431 828.438155 1.1322 0.00093913 -0.076901 -6.3785E-05 1.0553 0.00087534 829.4451632017967 71.954 0.68021 65.778 65.443 66.123 -6.1757 72 36 3 0 0 0 0.64035 1 47016 47016 22.453 1.5814 1 57870000 48001 15766 32376 33119 55959 55959 0.017073259487233372 PVFGSDLGQL 10 Unmodified _PVFGSDLGQL_ 0 0 0 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 REV__nc|ENSG00000117859|Q96SU4-7|OSBPL9 MSMS AL20221201_MKP_PDAC_01 4 516.7683715820312 2 516.771657 1031.52876 NaN NaN NaN NaN NaN NaN NaN 83.849 1 77.673 77.173 78.173 -6.1757 0 0 0 0.64375 1 55148 55148 19.257 2.1704 1 + 48002 19126 32377 33120 55960 55960 0.014257502063173888 PVFIKDFWQRF 11 Unmodified _PVFIKDFWQRF_ 0 0 0 REV__ENSG00000183340|ENST00000332349|JRKL REV__ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.270751953125 3 494.934595 1481.78196 0.79573 0.00039384 0.35671 0.00017655 1.1524 0.00057038 494.93484236233576 77.751 0.38184 71.575 71.221 71.603 -6.1757 31 21 2 0 0 0 0.64126 1 50827 50827 9.2438 6.6125 1 13993000 + 48003 23341 32378 33121 55961 55961 0.0603360265658921 PVFKYFLEI 9 Unmodified _PVFKYFLEI_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8857727050781 3 385.886471 1154.63758 -0.45223 -0.00017451 0.54008 0.00020841 0.087856 3.3902E-05 385.88639395455635 25.014 0.10774 25.014 25 25.108 0 9 8 2 0 0 0 0.47846 1 12819 12819 8.7454 0.58988 1 1408800 + 48004 24515 32379 33122 55962 55962 0.06644961176630204 PVFLHLLYL 9 Unmodified _PVFLHLLYL_ 0 0 0 REV__ENST00000269919.10_1_19:18468362-18474329:+|nuORF REV__ENST00000269919.10_1_19:18468362-18474329:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8380737304688 2 557.836603 1113.65865 1.3841 0.00077209 -0.655 -0.00036538 0.72908 0.00040671 557.8364473444982 97.827 0.33859 91.652 91.553 91.891 -6.1757 51 22 4 0 0 0 0.22317 1 64934 64934 20.871 0 1 200460000 + 48005 25130 32380 33123 55963 55963 0.1063697127613068 PVFLRHAEL 9 Unmodified _PVFLRHAEL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3120727539062 2 541.311284 1080.60801 0.67511 0.00036544 0.017587 9.5199E-06 0.6927 0.00037496 541.3111197689345 56.935 0.29708 56.866 56.678 56.975 -0.068737 25 14 2 0 0 0 0.016448 1 30932 30932 72.968 45.339 1 6324700 48006 15906;14132 32381 33124 55964 55964 0.07093441951110435 PVFLRHAEL 9 Unmodified _PVFLRHAEL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3115844726562 2 541.311284 1080.60801 NaN NaN NaN NaN NaN NaN NaN 57.049 1 56.983 56.483 57.483 -0.066036 0 0 0 0.3052 1 31046 31046 26.268 11.43 1 48007 15906;14132 32381 33124 55965 55965 0.07093441951110435 PVFLRHAELI 10 Unmodified _PVFLRHAELI_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.9046936035156 3 398.904636 1193.69208 0.53376 0.00021292 -0.083275 -3.3219E-05 0.45049 0.0001797 398.9045652507535 57.26 0.31913 56.77 56.645 56.964 -0.48974 19 14 2 0 0 0 0.38225 1 31141 31141 22.658 12.894 1 2910900 48008 15906;14132 32382 33125 55966 55966 0.10297973048022868 PVFLRHAELI 10 Unmodified _PVFLRHAELI_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion;ENST00000483549.5_1_22:46114317-46136469:+|nuORF GTSE1-ATXN10|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.9049987792969 3 398.904636 1193.69208 1.385 0.00055249 -0.265 -0.00010571 1.12 0.00044678 398.9045497283973 88.299 0.94736 82.123 81.476 82.424 -6.1757 160 52 4 0 0 0 0.45406 1 58143 58143 18.721 6.4936 1 121930000 48009 15906;14132 32382 33125 55967 55967 0.10297973048022868 PVFLRLVEI 9 Unmodified _PVFLRLVEI_ 0 0 0 ENST00000354300.4_1_12:110974620-110974755:-|nuORF ENST00000354300.4_1_12:110974620-110974755:-|nuORF ENST00000354300.4_1_12:110974620-110974755:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3408813476562 2 543.33951 1084.66447 1.8076 0.00098213 -0.12801 -6.9552E-05 1.6796 0.00091258 543.3394108428001 93.266 0.39398 93.289 93.078 93.472 0.022987 28 14 3 0 0 0 0.10734 1 51838 51838 32.305 1.6689 1 3631000 48010 12063 32383 33126 55968 55968 0.12552069787784603 PVFQGRCAF 9 Unmodified _PVFQGRCAF_ 0 0 0 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 REV__nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2792358398438 2 512.755287 1023.49602 0.7681 0.00039385 -3.8697 -0.0019842 -3.1016 -0.0015904 512.7532006500314 79.445 0.48495 78.956 78.75 79.235 -0.48932 39 20 2 0 0 0 0.19298 1 43529 43529 13.508 4.1604 1 3048200 + 48011 20468 32384 33127 55969 55969 -0.014787353975066253 PVFSWCYGL 9 Unmodified _PVFSWCYGL_ 0 0 0 ENST00000236938.10_1_1:161683740-161683920:+|nuORF ENST00000236938.10_1_1:161683740-161683920:+|nuORF ENST00000236938.10_1_1:161683740-161683920:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2456665039062 2 536.252046 1070.48954 0.63585 0.00034098 1.2982 0.00069615 1.934 0.0010371 536.2527183380917 74.462 0.82 73.986 73.741 74.561 -0.47588 113 34 5 0 0 0 0.25297 2 40885 40885;40996 19.439 3.3245 1 47754000 48012 11087 32385 33128 55970;55971 55970 -0.04288673348878547 PVFTASRWMVY 11 Unmodified _PVFTASRWMVY_ 0 0 0 nc|ENSG00000292363|Q9HC73-2|CRLF2;ENSG00000205755|ENST00000400841|CRLF2 nc|ENSG00000292363|Q9HC73-2|CRLF2 nc|ENSG00000292363|Q9HC73-2|CRLF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.8440551757812 2 678.842091 1355.66963 0.19869 0.00013488 2.0113 0.0013653 2.2099 0.0015002 678.8434582429649 40.043 0.27334 39.746 39.569 39.843 -0.29716 28 12 3 0 0 0 0.48615 1 21122 21122 17.113 4.8722 1 6647000 48013 10380 32386 33129 55972 55972 0.00602005588098109 PVFTRYRCL 9 Unmodified _PVFTRYRCL_ 0 0 0 REV__ENST00000309862.10_1_17:37830244-37844267:-|nuORF REV__ENST00000309862.10_1_17:37830244-37844267:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8757629394531 3 385.542821 1153.60663 -0.2125 -8.1926E-05 0.8913 0.00034364 0.67881 0.00026171 385.54319516240804 37.297 0.3561 37.318 37.108 37.464 0.021545 44 15 4 0 0 0 0.39863 1 19735 19735 8.1555 1.9637 1 7218400 + 48014 21595 32387 33130 55973 55973 0.035974845907276176 PVFTRYRCL 9 Unmodified _PVFTRYRCL_ 0 0 0 REV__ENST00000309862.10_1_17:37830244-37844267:-|nuORF REV__ENST00000309862.10_1_17:37830244-37844267:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 385.542821 1153.60663 1.9638 0.00075715 0.92265 0.00035572 2.8865 0.0011129 385.54299073450295 41.827 0.39484 37.219 36.999 37.394 -4.6079 -0.049517 2.8598E-05 NaN 8.1555 55 24 3 NaN NaN NaN NaN 0 NaN NaN 0 6360100 + 48015 21595 32387 33130 0.035974845907276176 PVFWFCVNVFE 11 Unmodified _PVFWFCVNVFE_ 0 0 0 REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.8316650390625 2 693.831191 1385.64783 -0.31951 -0.00022168 1.1303 0.00078426 0.81082 0.00056257 693.8320865218326 33.252 0.25957 33.093 32.936 33.196 -0.15918 24 10 3 0 0 0 0.68427 1 17319 17319 5.7319 2.1354 1 2077100 + 48016 20423 32388 33131 55974 55974 -0.029567991604835697 PVFWFCVNVFE 11 Unmodified _PVFWFCVNVFE_ 0 0 0 REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 693.831191 1385.64783 -0.76022 -0.00052746 -1.8632 -0.0012928 -2.6234 -0.0018202 693.8309512212054 33.086 0.13737 33.086 33.029 33.166 0 -0.0038466 -0.0037995 NaN 5.7319 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1012400 + 48017 20423 32388 33131 -0.029567991604835697 PVFWFCVNVFE 11 Unmodified _PVFWFCVNVFE_ 0 0 0 REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF REV__ENST00000475890.5_1_12:53552117-53555118:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 693.831191 1385.64783 -0.31951 -0.00022168 1.1303 0.00078426 0.81082 0.00056257 693.8320865218326 33.252 0.25957 33.093 32.936 33.196 -0.15918 0.0038466 0.00035457 NaN 5.7319 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2077100 + 48018 20423 32388 33131 -0.029567991604835697 PVGACQRLF 9 Unmodified _PVGACQRLF_ 0 0 0 REV__ENST00000545579.5_1_11:113570319-113570689:-|nuORF REV__ENST00000545579.5_1_11:113570319-113570689:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.7623291015625 2 495.763112 989.511671 NaN NaN NaN NaN NaN NaN NaN 69.058 1 62.882 62.382 63.382 -6.1757 0 0 0 0.43505 1 45092 45092 18.135 1.0484 1 + 48019 25297 32389 33132 55975 55975 0.016495511195444124 PVGDTVITI 9 Unmodified _PVGDTVITI_ 0 0 0 REV__ENST00000467551.1_1_1:151065823-151090440:+|nuORF REV__ENST00000467551.1_1_1:151065823-151090440:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7637939453125 2 457.7633 913.512048 0.5164 0.00023639 0.60885 0.00027871 1.1252 0.0005151 457.76355889352885 77.218 0.27094 77.218 77.068 77.339 0 25 11 3 0 0 0 0.2001 1 42873 42873 23.148 0 1 1415600 + 48020 20642 32390 33133 55976 55976 0.05183249320384675 PVGEPDKPR 9 Unmodified _PVGEPDKPR_ 0 0 0 REV__ENSG00000171094|ENST00000389048|ALK REV__ENSG00000171094|ENST00000389048|ALK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7674560546875 2 497.769448 993.524344 NaN NaN NaN NaN NaN NaN NaN 22.962 1 22.979 22.479 23.479 0.01749 0 0 0 0.6306 1 11811 11811 11.64 2.2572 1 + 48021 22531 32391 33134 55977 55977 0.027322857834292336 PVGEPPRCQL 10 Unmodified _PVGEPPRCQL_ 0 0 0 REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7877197265625 2 548.284408 1094.55426 0.64424 0.00035323 1.7244 0.00094546 2.3686 0.0012987 548.7876583997894 74.113 0.35353 73.637 73.487 73.84 -0.47588 17 14 2 0 0 0 0.50944 1 40577 40577 15.847 2.3393 1 718360 + 48022 18572 32392 33135 55978 55978 0.010769014571224034 PVGEPPRCQL 10 Unmodified _PVGEPPRCQL_ 0 0 0 REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.284408 1094.55426 0.64424 0.00035323 1.7244 0.00094546 2.3686 0.0012987 548.7876583997894 74.113 0.35353 73.637 73.487 73.84 -0.47588 -0.10925 5.8254E-05 NaN 15.847 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 718360 + 48023 18572 32392 33135 0.010769014571224034 PVGFALPE 8 Unmodified _PVGFALPE_ 0 0 0 REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 829.4464111328125 1 829.445431 828.438155 -0.068299 -5.665E-05 -0.29751 -0.00024677 -0.36581 -0.00030342 829.4451539090117 64.752 0.78387 64.752 64.386 65.169 0 64 37 2 0 0 0 0.70131 2 36286 35909;36286 17.087 5.9721 1 1969800 + 48024 26784 32393 33136 55979;55980 55980 0.017073259487119685 PVGFALPE 8 Unmodified _PVGFALPE_ 0 0 0 REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF REV__ENST00000416938.5_1_7:99704896-99705589:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.4442749023438 1 829.445431 828.438155 -0.23203 -0.00019245 0.48629 0.00040335 0.25427 0.0002109 829.4458560798013 65.312 0.77406 64.828 64.448 65.222 -0.48428 64 35 2 0 0 0 0.70131 1 35822 35822 17.087 1.3183 1 3078300 + 48025 26784 32393 33136 55981 55981 0.017073259487119685 PVGFLGNGT 9 Unmodified _PVGFLGNGT_ 0 0 0 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4558715820312 1 861.446494 860.439217 0.32374 0.00027889 -0.074814 -6.4448E-05 0.24893 0.00021444 861.4464161536622 45.812 0.34956 45.812 45.644 45.994 0 49 17 4 0 0 0 0.46577 1 24988 24988 9.3474 2.9933 1 62122000 48026 9471 32394 33137 55982 55982 0.0034154031761772785 PVGGDSRF 8 Unmodified _PVGGDSRF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.7094421386719 2 417.70886 833.403166 -0.15023 -6.2754E-05 -1.0945 -0.00045716 -1.2447 -0.00051992 417.70889868838964 22.2 0.78835 22.223 21.982 22.771 0.022896 49 34 2 0 0 0 0.67686 2 11230 11230;11332 19.257 3.4098 1 3686000 48027 5370 32395 33138 55983;55984 55983 -0.020199168592398564 PVGGDSRF 8 Unmodified _PVGGDSRF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MSMS AL20221201_MKP_PDAC_01 4 417.7091674804688 2 417.70886 833.403166 NaN NaN NaN NaN NaN NaN NaN 24.946 1 22.063 21.563 22.563 -2.8831 0 0 0 0.30911 1 13616 13616 62.573 14.227 1 48028 5370 32395 33138 55985 55985 -0.020199168592398564 PVGGDSRFVF 10 Unmodified _PVGGDSRFVF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7777709960938 2 540.777274 1079.53999 0.36143 0.00019546 -1.4437 -0.00078074 -1.0823 -0.00058528 540.7763980727087 54.942 0.25597 54.873 54.724 54.98 -0.068741 29 12 3 0 0 0 0.36296 1 29815 29815 23.79 4.3508 1 8060400 48029 5370 32396 33139 55986 55986 0.003405723004561878 PVGLHPAP 8 Unmodified _PVGLHPAP_ 0 0 0 ENST00000601726.3_2_1:145498656-145507389:-|nuORF ENST00000601726.3_2_1:145498656-145507389:-|nuORF ENST00000601726.3_2_1:145498656-145507389:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2262268066406 2 394.226688 786.438824 -0.7775 -0.00030651 -0.83575 -0.00032947 -1.6132 -0.00063599 394.2261146882125 28.403 0.22849 28.403 28.292 28.52 0 13 13 2 0 0 0 0.61999 1 14678 14678 24.21 7.1234 1 2310100 48030 15810 32397 33140 55987 55987 0.037061653884165935 PVGLRARGAH 10 Unmodified _PVGLRARGAH_ 0 0 0 REV__ENST00000339570.9_1_12:125262502-125262823:-|nuORF REV__ENST00000339570.9_1_12:125262502-125262823:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.2568359375 2 517.304324 1032.5941 0.89052 0.00046067 -3.7929 -0.0019621 -2.9024 -0.0015014 517.8048170706352 70.221 0.094116 64.045 63.989 64.083 -6.1757 5 4 2 0 0 0 0.23489 1 45897 45897 7.9102 3.5809 1 10430000 + 48031 25683 32398 33141 55988 55988 0.07910209242709243 PVGMTEIII 9 Unmodified _PVGMTEIII_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2755126953125 2 486.775354 971.536154 0.51876 0.00025252 -2.8456 -0.0013852 -2.3269 -0.0011327 486.7747389657123 100.61 0.12826 94.434 94.36 94.488 -6.1757 19 8 3 0 0 0 0.06187 1 67307 67307 42.095 0.27733 1 34535000 + 48032 22278 32399 33142 55989 55989 0.049247664824065396 PVGNPPTV 8 Unmodified _PVGNPPTV_ 0 0 0 ENST00000371626.8_1_1:52521199-52521451:-|nuORF ENST00000371626.8_1_1:52521199-52521451:-|nuORF ENST00000371626.8_1_1:52521199-52521451:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.7158508300781 2 390.716153 779.417754 -0.039028 -1.5249E-05 -0.41628 -0.00016265 -0.45531 -0.0001779 390.71602939515475 64.945 0.32758 64.945 64.765 65.093 0 23 15 2 0 0 0 0.71616 1 36224 36224 15.768 0 1 1368400 48033 12362 32400 33143 55990 55990 0.0192215528890074 PVGNPPTV 8 Unmodified _PVGNPPTV_ 0 0 0 ENST00000371626.8_1_1:52521199-52521451:-|nuORF ENST00000371626.8_1_1:52521199-52521451:-|nuORF ENST00000371626.8_1_1:52521199-52521451:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 390.716153 779.417754 0.19549 7.6382E-05 -0.62234 -0.00024316 -0.42685 -0.00016678 390.715802966937 65.447 0.18731 64.963 64.854 65.041 -0.48428 0.0087183 -0.00011329 NaN 15.768 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 821810 48034 12362 32400 33143 0.0192215528890074 PVGPVHFF 8 Unmodified _PVGPVHFF_ 0 0 0 ENST00000483791.6_1_1:249152025-249153300:-|nuORF;ENST00000412341.6_1_1:249150017-249153213:-|nuORF ENST00000483791.6_1_1:249152025-249153300:-|nuORF ENST00000483791.6_1_1:249152025-249153300:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2404174804688 2 450.242338 898.470124 NaN NaN NaN NaN NaN NaN NaN 17.886 1 17.891 17.391 18.391 0.0050564 0 0 0 0.97444 1 9042 9042 0.79363 0.19213 1 48035 12985 32401 33144 55991 55991 0.016827384225166497 PVGRVHRL 8 Unmodified _PVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2911987304688 2 467.290685 932.566818 0.20709 9.6773E-05 0.062256 2.9092E-05 0.26935 0.00012586 467.29075605641395 26.574 0.23483 26.601 26.446 26.681 0.026951 16 9 2 0 0 0 0.050643 1 13758 13758 153.26 38.318 1 17974000 48036 9238;9236 32402 33145 55992 55992 0.09783725702311585 PVGRVHRL 8 Unmodified _PVGRVHRL_ 0 0 0 ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12 ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7918701171875 2 467.290685 932.566818 0.65569 0.0003064 0.1298 6.0656E-05 0.7855 0.00036706 467.290765051882 30.139 0.3248 26.642 26.488 26.812 -3.497 26 15 2 0 0 0 0.054917 2 16964 16964;17080 137.59 48.158 1 39566000 48037 9238;9236 32402 33145 55993;55994 55993 0.09783725702311585 PVGSLGRKGP 10 Unmodified _PVGSLGRKGP_ 0 0 0 REV__ENSG00000081052|ENST00000396625|COL4A4 REV__ENSG00000081052|ENST00000396625|COL4A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2887878417969 2 484.287808 966.561064 NaN NaN NaN NaN NaN NaN NaN 48.765 1 48.721 48.221 49.221 -0.04369 0 0 0 0.7417 1 26325 26325 14.838 5.4908 1 + 48038 17681 32403 33146 55995 55995 0.07644582399996125 PVGTIATLT 9 Unmodified _PVGTIATLT_ 0 0 0 REV__ENST00000358170.6_1_1:207967631-207967700:+|nuORF REV__ENST00000358170.6_1_1:207967631-207967700:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7576599121094 2 436.758018 871.501483 -0.13721 -5.9928E-05 -0.010971 -4.7918E-06 -0.14818 -6.472E-05 436.75798009337103 52.07 0.29018 52.07 51.953 52.243 0 20 12 2 0 0 0 0.052168 1 28786 28786 44.407 0 1 3526100 + 48039 25871 32404 33147 55996 55996 0.060592666659431416 PVGTIATLT 9 Unmodified _PVGTIATLT_ 0 0 0 REV__ENST00000358170.6_1_1:207967631-207967700:+|nuORF REV__ENST00000358170.6_1_1:207967631-207967700:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.758018 871.501483 -0.13721 -5.9928E-05 -0.010971 -4.7918E-06 -0.14818 -6.472E-05 436.75798009337103 52.07 0.29018 52.07 51.953 52.243 0 -0.058753 0.00019097 NaN 44.407 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3526100 + 48040 25871 32404 33147 0.060592666659431416 PVGTPVLF 8 Unmodified _PVGTPVLF_ 0 0 0 REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 829.4823608398438 1 829.481817 828.47454 0.50646 0.0004201 0.48573 0.0004029 0.99219 0.000823 829.4822102353854 74.193 0.42728 74.237 74.006 74.433 0.043976 27 18 2 0 0 0 0.50586 1 40973 40973 34.187 0 1 1321600 + 48041 27655 32405 33148 55997 55997 0.05344202845435575 PVGVIILEG 9 Unmodified _PVGVIILEG_ 0 0 0 nc|ENSG00000198324|Q8N4B1-4|PHETA1;ENSG00000198324|ENST00000683047|PHETA1 nc|ENSG00000198324|Q8N4B1-4|PHETA1 nc|ENSG00000198324|Q8N4B1-4|PHETA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.54541015625 1 896.545145 895.537869 -0.34389 -0.00030831 -0.08728 -7.8251E-05 -0.43117 -0.00038657 896.5448342069477 102.11 0.065033 101.99 101.94 102 -0.11613 4 2 2 0 0 0 0.53666 1 55714 55714 5.2307 2.3415 1 449040 48042 10076 32406 33149 55998 55998 0.08592143562668753 PVGVRVVG 8 Unmodified _PVGVRVVG_ 0 0 0 ENST00000523256.6_2_8:104427097-104427358:-|nuORF ENST00000523256.6_2_8:104427097-104427358:-|nuORF ENST00000523256.6_2_8:104427097-104427358:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 782.0127563476562 1 782.488299 781.481023 1.7634 0.0013799 -1.0684 -0.00083602 0.69501 0.00054384 782.4876085601568 105 0.22083 98.827 98.67 98.891 -6.1757 29 17 3 0 0 0 8.7369 1 70215 70215 5.7604 0 1 106870000 48043 14766 32407 33150 55999 55999 0.08154140796807496 PVGYFYHF 8 Unmodified _PVGYFYHF_ 0 0 0 REV__ENSG00000205667|ENST00000381130|ARSH REV__ENSG00000205667|ENST00000381130|ARSH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.24560546875 2 515.245078 1028.4756 0.65653 0.00033827 1.4019 0.00072231 2.0584 0.0010606 515.2453540339609 74.773 0.27344 74.297 74.133 74.406 -0.47588 26 10 4 0 0 0 0.80624 1 40914 40914 2.8892 0 1 1066400 + 48044 24235 32408 33151 56000 56000 -0.03749582785690109 PVHFLLLL 8 Unmodified _PVHFLLLL_ 0 0 0 ENSG00000178473|ENST00000380433|UCN3 ENSG00000178473|ENST00000380433|UCN3 ENSG00000178473|ENST00000380433|UCN3 MSMS AL20221201_MKP_PDAC_01 4 476.3065185546875 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 105.26 1 99.089 98.589 99.589 -6.1757 0 0 0 0.97444 1 70527 70527 0.79363 0 1 48045 8755 32409 33152 56001 56001 0.11805030558900853 PVHGQLQF 8 Unmodified _PVHGQLQF_ 0 0 0 REV__ENSG00000121380|ENST00000308721|BCL2L14 REV__ENSG00000121380|ENST00000308721|BCL2L14 MSMS AL20221201_MKP_PDAC_01 4 463.2488098144531 2 463.248152 924.481751 NaN NaN NaN NaN NaN NaN NaN 46.457 1 41.376 40.876 41.876 -5.0805 0 0 0 0.50394 1 28696 28696 40.449 11.367 1 + 48046 19290 32410 33153 56002 56002 0.01648935445848565 PVHPWPFPCA 10 Unmodified _PVHPWPFPCA_ 0 0 0 nc|ENSG00000179082|Q8NAJ2|LINC02913 nc|ENSG00000179082|Q8NAJ2|LINC02913 nc|ENSG00000179082|Q8NAJ2|LINC02913 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7804565429688 2 575.778762 1149.54297 NaN NaN NaN NaN NaN NaN NaN 2.3622 1 2.3452 1.8452 2.8452 -0.017019 0 0 0 1.0047 1 1205 1205 0 0 1 48047 16416 32411 33154 56003 56003 -0.02581875846362891 PVHQYLQTTH 10 Unmodified _PVHQYLQTTH_ 0 0 0 REV__ENSG00000163517|ENST00000295757|HDAC11 REV__ENSG00000163517|ENST00000295757|HDAC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8777770996094 3 408.543767 1222.60947 0.29233 0.00011943 -0.015141 -6.1856E-06 0.27719 0.00011325 408.8780523405922 15.059 0.11361 12.532 12.47 12.584 -2.5273 24 15 2 0 0 0 0.63399 1 7700 7700 8.4443 0 1 2167800 + 48048 21775 32412 33155 56004 56004 0.007070312492032826 PVHRALHRA 9 Unmodified _PVHRALHRA_ 0 0 0 ENST00000374694.2_1_10:35928201-35929404:-|nuORF ENST00000374694.2_1_10:35928201-35929404:-|nuORF ENST00000374694.2_1_10:35928201-35929404:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.812255859375 2 528.812316 1055.61008 -0.079323 -4.1947E-05 -1.3824 -0.00073103 -1.4617 -0.00077297 528.8117744282489 37.682 0.15971 37.699 37.572 37.731 0.01704 11 7 2 0 0 0 0.21819 1 20031 20031 2.0598 0 1 1974000 48049 12454 32413 33156 56005 56005 0.08449915479604897 PVHSCFHSF 9 Unmodified _PVHSCFHSF_ 0 0 0 ENST00000473333.1_1_7:74160372-74160549:+|nuORF ENST00000473333.1_1_7:74160372-74160549:+|nuORF ENST00000473333.1_1_7:74160372-74160549:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8273010253906 3 354.160488 1059.45964 -0.1691 -5.9888E-05 0.17248 6.1086E-05 0.0033834 1.1983E-06 354.16195566447476 70.636 0.19072 70.636 70.496 70.686 0 10 7 2 0 0 0 0.21798 1 39345 39345 1.1933 0 1 610670 48050 13920 32414 33157 56006 56006 -0.0677161229423291 PVHSKIFP 8 Unmodified _PVHSKIFP_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.768798828125 2 462.76872 923.522887 -0.62415 -0.00028884 0.45981 0.00021279 -0.16434 -7.6051E-05 462.7688839151421 36.083 0.40517 35.833 35.661 36.066 -0.2497 46 18 3 0 0 0 0.24071 2 18967 18866;18967 63.563 20.075 1 82064000 + 48051 22604 32415 33158 56007;56008 56008 0.05806696485319662 PVHSKIFP 8 Unmodified _PVHSKIFP_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7685546875 2 462.76872 923.522887 -0.012318 -5.7002E-06 -0.63504 -0.00029388 -0.64736 -0.00029958 462.7683830584211 35.71 0.40968 35.735 35.581 35.99 0.024971 57 19 4 0 0 0 0.28922 1 18847 18847 56.541 12.134 1 97525000 + 48052 22604 32415 33158 56009 56009 0.05806696485319662 PVHSKIFP 8 Unmodified _PVHSKIFP_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7690124511719 2 462.76872 923.522887 0.31829 0.0001473 0.21347 9.8789E-05 0.53177 0.00024608 462.7688412202779 40.141 0.91989 35.612 35.275 36.195 -4.5294 218 68 4 0 0 0 0.19792 5 23877 23737;23877;24010;24141;24275 70.716 24.966 1 479370000 + 48053 22604 32415 33158 56010;56011;56012;56013;56014 56011 0.05806696485319662 PVHSKIFP 8 Unmodified _PVHSKIFP_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 462.76872 923.522887 0.63997 0.00029616 -1.0375 -0.0004801 -0.39748 -0.00018394 462.76861779399127 35.94 0.19579 35.94 35.836 36.032 0 0.15979 -0.0010495 NaN 70.716 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3105800 + 48054 22604 32415 33158 0.05806696485319662 PVHSLQGHDD 10 Unmodified _PVHSLQGHDD_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MSMS AL20221201_MKP_PDAC_01 4 552.75830078125 2 552.757069 1103.49959 NaN NaN NaN NaN NaN NaN NaN 40.19 1 35.661 35.161 36.161 -4.5294 0 0 0 0.71851 1 23972 23972 15.847 4.2069 1 + 48055 23101 32416 33159 56015 56015 -0.04802394089938389 PVHTGEKPY 9 Unmodified _PVHTGEKPY_ 0 0 0 ENSG00000245680|ENST00000532828|ZNF585B;ENSG00000196967|ENST00000292841|ZNF585A ENSG00000245680|ENST00000532828|ZNF585B ENSG00000245680|ENST00000532828|ZNF585B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2652587890625 2 514.263999 1026.51345 0.56485 0.00029048 -0.95281 -0.00049 -0.38796 -0.00019951 514.2640711141909 62.575 0.31178 62.087 61.894 62.206 -0.48764 28 14 3 0 0 0 0.30562 1 34070 34070 16.942 0 1 4625500 48056 9891 32417 33160 56016 56016 0.0012488340912568674 PVHTVPLSEDQ 11 Unmodified _PVHTVPLSEDQ_ 0 0 0 nc|ENSG00000014257|P15309-2|ACP3;ENST00000493235.5_1_3:132036276-132056343:+|nuORF;nc|ENSG00000014257|P15309-3|ACP3;ENSG00000014257|ENST00000336375|ACP3 nc|ENSG00000014257|P15309-2|ACP3 nc|ENSG00000014257|P15309-2|ACP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.822998046875 2 611.309135 1220.60372 0.17585 0.0001075 3.2618 0.001994 3.4377 0.0021015 611.3113124646866 89.503 0.18784 89.503 89.42 89.608 0 19 11 3 0 0 0 0.29564 1 49529 49529 9.3831 5.7866 1 609670 48057 16021 32418 33161 56017 56017 0.002238879469132371 PVIADAKSLV 10 Unmodified _PVIADAKSLV_ 0 0 0 REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.8058776855469 2 506.8055 1011.59645 0.24011 0.00012169 0.5122 0.00025959 0.75231 0.00038127 506.8055641573366 47.746 0.33197 47.393 47.223 47.555 -0.3526 20 15 2 0 0 0 0.32072 1 25637 25637 26.268 0 1 1987300 + 48058 26187 32419 33162 56018 56018 0.09111200137135711 PVIASQTK 8 Unmodified _PVIASQTK_ 0 0 0 REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2506103515625 2 422.25036 842.486168 -0.62539 -0.00026407 1.3349 0.00056364 0.70947 0.00029957 422.2508560752674 105.99 0.17701 105.94 105.89 106.07 -0.048103 12 7 2 0 0 0 0.80975 1 58750 58750 0.79363 0 1 3778500 + 48059 29320 32420 33163 56019 56019 0.05862399868772172 PVIASQTK 8 Unmodified _PVIASQTK_ 0 0 0 REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2511291503906 2 422.25036 842.486168 NaN NaN NaN NaN NaN NaN NaN 104.55 1 104.5 104 105 -0.048737 0 0 0 0.97444 1 58047 58047 0.79363 0 1 + 48060 29320 32420 33163 56020 56020 0.05862399868772172 PVIASQTK 8 Unmodified _PVIASQTK_ 0 0 0 REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF REV__ENST00000607874.1_2_X:129115118-129115193:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2518310546875 2 422.25036 842.486168 1.8506 0.00078142 0.81295 0.00034327 2.6636 0.0011247 422.2506125196077 106.86 0.81985 100.69 100.04 100.86 -6.1757 235 146 2 0 0 0 0.80975 4 71133 71133;71242;71352;71460 0.79363 0 1 5193300 + 48061 29320 32420 33163 56021;56022;56023;56024 56021 0.05862399868772172 PVIDLLVGG 9 Unmodified _PVIDLLVGG_ 0 0 0 REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7699279785156 2 441.768386 881.522219 0.42443 0.0001875 2.0255 0.0008948 2.4499 0.0010823 441.76965696624063 66.303 0.33706 66.303 66.175 66.512 0 36 14 4 0 0 0 0.62242 1 36958 36958 0 0 1 2843400 + 48062 27574 32421 33164 56025 56025 0.07671857045636443 PVIENPQYF 9 Unmodified _PVIENPQYF_ 0 0 0 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3;EML4-NTRK3|2|fusion;EML4-NTRK3|1|fusion;nc|ENSG00000140538|Q16288-2|NTRK3;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2;nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000148053|Q16620-6|NTRK2 nc|ENSG00000140538|Q16288-5|NTRK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2518310546875 2 553.779482 1105.54441 0.28264 0.00015652 0.33963 0.00018808 0.62227 0.0003446 553.7799627255016 71.806 0.54651 71.806 71.548 72.095 0 58 24 3 0 0 0 0.17666 1 39997 39997 8.5933 3.8373 1 2491300 48063 5250;5892 32422 33165 56026 56026 -0.004139632766282375 PVIFWLSGF 9 Unmodified _PVIFWLSGF_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8643188476562 3 355.863778 1064.5695 1.5222 0.00054169 0.99422 0.00035381 2.5164 0.00089549 355.8635812314826 39.104 0.4504 34.653 34.361 34.811 -4.4509 79 28 5 0 0 0 0.37804 1 23089 23089 8.7454 0 1 19221000 48064 9210 32423 33166 56027 56027 0.03980136316613425 PVISESEVF 9 Unmodified _PVISESEVF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7770080566406 2 503.758215 1005.50188 0.53059 0.00026729 -1.8618 -0.0009379 -1.3312 -0.00067061 503.7572567311159 69.46 0.32956 69.46 69.269 69.598 0 22 14 2 0 0 0 0.19298 1 38712 38712 13.508 2.684 1 896680 48065 4205 32424 33167 56028 56028 -0.000653584048563971 PVISHPSWESV 11 Unmodified _PVISHPSWESV_ 0 0 0 REV__ENST00000243563.7_1_19:41271159-41271261:+|nuORF REV__ENST00000243563.7_1_19:41271159-41271261:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.3147583007812 2 619.31422 1236.61389 0.013607 8.4267E-06 0.19151 0.00011861 0.20512 0.00012703 619.3149155807996 39.601 0.21773 39.304 39.154 39.371 -0.29716 20 9 3 0 0 0 0.39949 1 20912 20912 21.537 4.0943 1 1831600 + 48066 24850 32425 33168 56029 56029 0.005044956721349081 PVISIVRHE 9 Unmodified _PVISIVRHE_ 0 0 0 ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3079223632812 2 525.308741 1048.60293 -0.011089 -5.8251E-06 -0.22361 -0.00011746 -0.2347 -0.00012329 525.3087490200814 38.102 0.25383 38.119 37.985 38.239 0.01704 29 11 3 0 0 0 0.14 1 20224 20224 29.082 1.4528 1 4768500 48067 10150 32426 33169 56030 56030 0.08057138088497595 PVIVPGCK 8 Unmodified _PVIVPGCK_ 0 0 0 REV__nc|ENSG00000185621|Q96KR4-2|LMLN REV__nc|ENSG00000185621|Q96KR4-2|LMLN MSMS AL20221201_MKP_PDAC_01 4 406.7370300292969 2 406.738574 811.462595 NaN NaN NaN NaN NaN NaN NaN 96.669 1 90.493 89.993 90.993 -6.1757 0 0 0 0.63034 1 64063 64063 32.117 7.907 1 + 48068 23513 32427 33170 56031 56031 0.04932262830584477 PVIVTYLVS 9 Unmodified _PVIVTYLVS_ 0 0 0 REV__ENSG00000197532|ENST00000641622|OR6Y1 REV__ENSG00000197532|ENST00000641622|OR6Y1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.3320617675781 2 495.797143 989.579734 0.75095 0.00037232 0.78423 0.00038882 1.5352 0.00076114 495.79714833531835 101.71 0.10089 95.535 95.461 95.562 -6.1757 7 4 2 0 0 0 0.203 1 68222 68222 9.3474 0 1 49506000 + 48069 23934 32428 33171 56032 56032 0.08452699251165541 PVIYYYRY 8 Unmodified _PVIYYYRY_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2938232421875 2 568.792392 1135.57023 0.57471 0.00032689 1.1587 0.00065905 1.7334 0.00098594 569.293569669234 74.462 0.15494 74.462 74.342 74.497 0 9 6 2 0 0 0 0.76859 1 41410 41410 11.114 1.767 1 1380000 48070 1803 32429 33172 56033 56033 0.007869309656598489 PVKEFEVY 8 Unmodified _PVKEFEVY_ 0 0 0 nc|ENSG00000290456|Q8N1L4|CYP4Z2P;nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;ENSG00000186160|ENST00000334194|CYP4Z1 nc|ENSG00000290456|Q8N1L4|CYP4Z2P nc|ENSG00000290456|Q8N1L4|CYP4Z2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.765869140625 2 505.7633 1009.51205 0.38234 0.00019337 0.023512 1.1891E-05 0.40585 0.00020526 505.7633070374187 64.728 1.3137 64.728 64.214 65.528 0 172 59 4 0 0 0 0.6895 1 36394 36394 18.135 0 1 29121000 48071 16632 32430 33173 56034 56034 0.0076724932038132465 PVKELKSI 8 Unmodified _PVKELKSI_ 0 0 0 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2897033691406 2 457.289485 912.564418 0.013931 6.3704E-06 0.34058 0.00015574 0.35451 0.00016211 457.2894993897828 53.827 0.23277 53.76 53.688 53.921 -0.066936 18 11 2 0 0 0 0.28079 1 29235 29235 57.471 11.45 1 2210900 48072 9088 32431 33174 56035 56035 0.10463832454001931 PVKELKSI 8 Unmodified _PVKELKSI_ 0 0 0 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2900695800781 2 457.289485 912.564418 0.94313 0.00043128 0.068309 3.1237E-05 1.0114 0.00046252 457.28931969552315 59.721 0.37591 53.606 53.337 53.713 -6.1147 31 20 2 0 0 0 0.19688 1 38312 38312 71.134 4.6769 1 30427000 48073 9088 32431 33174 56036 56036 0.10463832454001931 PVKESRTGWSS 11 Unmodified _PVKESRTGWSS_ 0 0 0 ENST00000564975.5_1_16:68087487-68087562:+|nuORF;ENST00000565263.5_1_16:68087487-68090268:+|nuORF ENST00000564975.5_1_16:68087487-68087562:+|nuORF ENST00000564975.5_1_16:68087487-68087562:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.8151245117188 2 617.314751 1232.61495 -0.32647 -0.00020154 -0.74639 -0.00046076 -1.0729 -0.00066229 617.3146721262669 34.401 0.18859 34.401 34.308 34.496 0 25 9 4 0 0 0 0.58245 1 18113 18113 15.248 5.8654 1 4583800 48074 15395 32432 33175 56037 56037 0.007947100410547137 PVKEVRRAAIQ 11 Unmodified _PVKEVRRAAIQ_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9269409179688 3 422.926211 1265.7568 0.033037 1.3972E-05 1.3606 0.00057542 1.3936 0.00058939 422.92667528803895 16.228 0.14342 16.233 16.131 16.275 0.0050564 14 12 2 0 0 0 0.7326 1 8105 8105 0.40827 0.078994 1 747430 48075 3420 32433 33176 56038 56038 0.13455547854050565 PVKFPSLR 8 Unmodified _PVKFPSLR_ 0 0 0 ENST00000394243.5_1_5:150029882-150030164:+|nuORF ENST00000394243.5_1_5:150029882-150030164:+|nuORF ENST00000394243.5_1_5:150029882-150030164:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.1249389648438 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 108.25 1 102.07 101.57 102.57 -6.1757 0 0 0 0.97444 1 72356 72356 0.69038 0 1 48076 12731 32434 33177 56039 56039 0.0915067189371257 PVKFPSLR 8 Unmodified _PVKFPSLR_ 0 0 0 ENST00000394243.5_1_5:150029882-150030164:+|nuORF ENST00000394243.5_1_5:150029882-150030164:+|nuORF ENST00000394243.5_1_5:150029882-150030164:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.6182861328125 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 108.91 1 102.73 102.23 103.23 -6.1757 0 0 0 0.97444 1 72763 72763 0.69038 0 1 48077 12731 32434 33177 56040 56040 0.0915067189371257 PVKGFRSY 8 Unmodified _PVKGFRSY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2651062011719 2 477.263802 952.513051 0.12213 5.8289E-05 0.53087 0.00025336 0.653 0.00031165 477.2644003453679 33.893 0.26767 33.922 33.769 34.036 0.028934 25 11 3 0 0 0 0.12533 1 17841 17841 92.491 44.146 1 7137400 48078 4347 32435 33178 56041 56041 0.0348950847994729 PVKGFRSY 8 Unmodified _PVKGFRSY_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2615966796875 2 477.263802 952.513051 1.0631 0.00050737 -1.4182 -0.00067684 -0.35508 -0.00016947 477.26291156369814 38.062 0.26608 33.693 33.548 33.814 -4.3689 28 15 2 0 0 0 0.21098 2 22362 22362;22490 68.081 19.735 1 27775000 48079 4347 32435 33178 56042;56043 56042 0.0348950847994729 PVKGLKTGY 9 Unmodified _PVKGLKTGY_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF;PLCG1|p.A1189T|1|0.18|ENSG00000124181|chr20:41173931-41173931|G/A|missense_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7874450683594 2 481.78711 961.559667 -0.18802 -9.0588E-05 0.62572 0.00030146 0.4377 0.00021088 481.7873789922806 36.736 0.30454 36.757 36.619 36.923 0.021545 27 13 3 0 0 0 0.0088668 1 19450 19450 87.258 41.237 1 3720400 48080 3756 32436 33179 56044 56044 0.07734948311224343 PVKGLKTGY 9 Unmodified _PVKGLKTGY_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF;PLCG1|p.A1189T|1|0.18|ENSG00000124181|chr20:41173931-41173931|G/A|missense_variant nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7862854003906 2 481.78711 961.559667 0.37447 0.00018042 -0.4347 -0.00020943 -0.060226 -2.9016E-05 481.7864448772082 41.463 0.34344 36.856 36.703 37.047 -4.6079 34 22 2 0 0 0 0.0082981 2 24840 24840;24974 96.936 42.162 1 16878000 48081 3756 32436 33179 56045;56046 56045 0.07734948311224343 PVKPRAAL 8 Unmodified _PVKPRAAL_ 0 0 0 nc|ENSG00000099849|Q02833-3|RASSF7;nc|ENSG00000099849|Q02833-2|RASSF7;ENSG00000099849|ENST00000397583|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 nc|ENSG00000099849|Q02833-3|RASSF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2766418457031 2 426.276712 850.538872 -0.010916 -4.6531E-06 0.61256 0.00026112 0.60164 0.00025647 426.2768933700104 30.125 0.20788 30.155 30.047 30.255 0.030106 11 8 2 0 0 0 0.74163 1 15762 15762 13.508 0 1 695960 48082 1714 32437 33180 56047 56047 0.10762402722230036 PVKRAGPI 8 Unmodified _PVKRAGPI_ 0 0 0 REV__ENSG00000182103|ENST00000329203|FAM181B REV__ENSG00000182103|ENST00000329203|FAM181B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.541259765625 2 419.268887 836.523222 0.56541 0.00023706 -0.32863 -0.00013778 0.23678 9.9274E-05 419.26886092857166 24.252 0.27603 21.424 21.305 21.581 -2.8273 24 15 2 0 0 0 8.7369 1 13167 13167 24.674 5.2349 1 4366600 + 48083 23241 32438 33181 56048 56048 0.09842116205186358 PVLAQTLV 8 Unmodified _PVLAQTLV_ 0 0 0 nc|ENSG00000187243|Q96JG8-2|MAGED4;ENSG00000187243|ENST00000335504|MAGED4B;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-4|MAGED4;nc|ENSG00000187243|Q96JG8-3|MAGED4;ENST00000470594.5_1_X:51809762-51812242:-|nuORF nc|ENSG00000187243|Q96JG8-2|MAGED4 nc|ENSG00000187243|Q96JG8-2|MAGED4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.7630615234375 2 420.763104 839.511654 0.22341 9.4002E-05 1.2719 0.00053515 1.4953 0.00062916 420.76342293845937 61.082 0.19633 61.082 60.953 61.149 0 11 7 2 0 0 0 0.76859 1 34048 34048 11.114 0.93107 1 408380 48084 6333 32439 33182 56049 56049 0.0854787439119491 PVLASLQL 8 Unmodified _PVLASLQL_ 0 0 0 REV__ENST00000574081.5_2_17:5113523-5113853:-|nuORF REV__ENST00000574081.5_2_17:5113523-5113853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.5184326171875 1 840.518931 839.511654 0.18588 0.00015624 1.4456 0.0012151 1.6315 0.0013713 840.5202936703971 61.057 0.24138 61.057 60.929 61.171 0 14 9 2 0 0 0 0.57408 1 34038 34038 28.173 1.832 1 537020 + 48085 29002 32440 33183 56050 56050 0.08547874391183541 PVLCGCVLFF 10 Unmodified _PVLCGCVLFF_ 0 0 0 ENST00000424349.1_1_3:14986389-14986572:-|nuORF ENST00000424349.1_1_3:14986389-14986572:-|nuORF ENST00000424349.1_1_3:14986389-14986572:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2799682617188 2 549.279749 1096.54494 0.34069 0.00018713 0.56661 0.00031123 0.90729 0.00049836 549.2800026318658 78.392 0.82105 78.392 77.965 78.786 0 102 37 4 0 0 0 0.68719 1 43709 43709 4.3292 4.3292 1 7917400 48086 13144 32441 33184 56051 56051 0.000534168472086094 PVLCGCVLFF 10 Unmodified _PVLCGCVLFF_ 0 0 0 ENST00000424349.1_1_3:14986389-14986572:-|nuORF ENST00000424349.1_1_3:14986389-14986572:-|nuORF ENST00000424349.1_1_3:14986389-14986572:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 549.279749 1096.54494 0.34069 0.00018713 0.56661 0.00031123 0.90729 0.00049836 549.2800026318658 78.392 0.82105 78.392 77.965 78.786 0 0 0 NaN 4.3292 102 37 4 NaN NaN NaN NaN 0 NaN NaN 0 7917400 48087 13144 32441 33184 0.000534168472086094 PVLCGRWHW 9 Unmodified _PVLCGRWHW_ 0 0 0 ENST00000511810.5_1_5:254575-256465:+|nuORF ENST00000511810.5_1_5:254575-256465:+|nuORF ENST00000511810.5_1_5:254575-256465:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.1943664550781 3 385.195644 1152.5651 -0.31856 -0.00012271 -0.95557 -0.00036808 -1.2741 -0.00049079 385.1949358457421 35.059 0.38332 34.836 34.575 34.958 -0.2224 35 16 3 0 0 0 0.58466 1 18402 18402 1.1933 0.49568 1 2162400 48088 14612 32442 33185 56052 56052 -0.005076513779613379 PVLDEHHQGDQ 11 Unmodified _PVLDEHHQGDQ_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.7921142578125 2 637.79164 1273.56873 -0.053202 -3.3932E-05 1.22 0.00077808 1.1668 0.00074414 637.7920161508106 66.689 0.40901 66.205 65.946 66.355 -0.48323 33 19 2 0 0 0 0.67922 1 36368 36368 6.2058 0.47393 1 1591400 48089 732 32443 33186 56053 56053 -0.057113548610459475 PVLDPVPK 8 Unmodified _PVLDPVPK_ 0 0 0 REV__ENSG00000171560|ENST00000403106|FGA REV__ENSG00000171560|ENST00000403106|FGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 864.5191650390625 1 864.518931 863.511654 -0.09882 -8.5432E-05 1.1211 0.00096917 1.0222 0.00088374 864.5196175838627 87.339 0.23804 86.835 86.708 86.946 -0.50423 15 9 2 0 0 0 0.72953 1 47771 47771 14.582 1.0738 1 360660 + 48090 22575 32444 33187 56054 56054 0.07443874391185545 PVLFAPRPAQV 11 Unmodified _PVLFAPRPAQV_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.9045104980469 3 398.904636 1193.69208 NaN NaN NaN NaN NaN NaN NaN 57.1 1 57.034 56.534 57.534 -0.066036 0 0 0 0.93694 1 31076 31076 4.7159 1.3963 1 48091 1438 32445 33188 56055 56055 0.10297973048000131 PVLFYVALS 9 Unmodified _PVLFYVALS_ 0 0 0 REV__ENST00000164133.6_1_11:64701657-64701921:+|nuORF REV__ENST00000164133.6_1_11:64701657-64701921:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7893371582031 2 504.791861 1007.56917 NaN NaN NaN NaN NaN NaN NaN 78.954 1 78.468 77.968 78.968 -0.48596 0 0 0 0.7243 1 43246 43246 8.5933 2.3875 1 + 48092 24714 32446 33189 56056 56056 0.06568716596746071 PVLGSWFVPI 10 Unmodified _PVLGSWFVPI_ 0 0 0 ENST00000377494.5_1_11:64510546-64510753:-|nuORF ENST00000377494.5_1_11:64510546-64510753:-|nuORF ENST00000377494.5_1_11:64510546-64510753:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8168334960938 2 557.81841 1113.62227 0.67832 0.00037838 -1.591 -0.0008875 -0.9127 -0.00050912 557.8175099521467 53.704 0.41929 53.253 52.963 53.383 -0.45173 38 20 2 0 0 0 0.33553 1 28979 28979 25.399 4.9457 1 9511700 48093 12520 32447 33190 56057 56057 0.07000094379418442 PVLIDRNFL 9 Unmodified _PVLIDRNFL_ 0 0 0 ENST00000331920.10_1_9:98239847-98239973:-|nuORF ENST00000331920.10_1_9:98239847-98239973:-|nuORF ENST00000331920.10_1_9:98239847-98239973:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8818359375 3 362.88172 1085.62333 0.39751 0.00014425 0.12837 4.6583E-05 0.52588 0.00019083 362.88177786168797 55.403 0.23185 54.925 54.774 55.005 -0.47798 27 10 3 0 0 0 0.48152 1 30038 30038 5.2969 0 1 3409100 48094 11866 32448 33191 56058 56058 0.08394308748324875 PVLKNLMF 8 Unmodified _PVLKNLMF_ 0 0 0 ENST00000267838.6_1_15:52016999-52017185:-|nuORF ENST00000267838.6_1_15:52016999-52017185:-|nuORF ENST00000267838.6_1_15:52016999-52017185:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2810363769531 2 481.280606 960.546659 0.6161 0.00029652 -0.88169 -0.00042434 -0.26559 -0.00012782 481.2800357220275 84.813 0.30444 84.314 84.157 84.462 -0.49961 17 12 2 0 0 0 0.80975 1 46414 46414 0.79363 0 1 304530 48095 11352 32449 33192 56059 56059 0.06480793927482864 PVLLAWAL 8 Unmodified _PVLLAWAL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7763977050781 2 441.776014 881.537475 0.69304 0.00030617 -0.20828 -9.2015E-05 0.48475 0.00021415 441.7759245811418 100.6 0.19638 94.425 94.345 94.541 -6.1757 17 13 2 0 0 0 0.5245 1 67322 67322 32.454 0 1 26070000 48096 1648 32450 33193 56060 56060 0.09196768633444208 PVLLGPPL 8 Unmodified _PVLLGPPL_ 0 0 0 nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1;ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 nc|ENSG00000155380|P53985-2|SLC16A1;ENST00000549928.5_1_12:60154925-60173457:+|nuORF nc|ENSG00000155380|P53985-2|SLC16A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2631530761719 2 403.262739 804.510926 1.4847 0.00059874 -0.64293 -0.00025927 0.84182 0.00033948 403.26242049460893 97.623 0.25339 91.448 91.313 91.566 -6.1757 29 14 3 0 0 0 0.70131 1 64667 64667 17.087 5.9721 1 32195000 48097 6386;3382 32451 33194 56061 56061 0.10085079742145808 PVLLHLPRM 9 Unmodified _PVLLHLPRM_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.325927734375 2 538.325879 1074.63721 0.25591 0.00013776 0.80159 0.00043151 1.0575 0.00056928 538.326032924103 92.328 0.41196 92.328 92.129 92.541 0 72 30 3 0 0 0 0.53666 1 51097 51097 5.2307 2.9279 1 1659400 48098 14231 32452 33195 56062 56062 0.10287262975771228 PVLLHLPRM 9 Unmodified _PVLLHLPRM_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3251953125 2 538.325879 1074.63721 0.29499 0.0001588 0.19436 0.00010463 0.48936 0.00026343 538.3254999597142 92.956 0.51361 92.499 92.257 92.771 -0.4574 43 26 2 0 0 0 0.46577 1 50783 50783 9.3474 4.1168 1 1729100 48099 14231 32452 33195 56063 56063 0.10287262975771228 PVLLKLIRL 9 Unmodified _PVLLKLIRL_ 0 0 0 ENST00000466027.1_1_13:96289346-96294343:-|nuORF;nc|ENSG00000134874|Q86YF9-3|DZIP1;nc|ENSG00000134874|Q86YF9-2|DZIP1;ENSG00000134874|ENST00000376829|DZIP1 ENST00000466027.1_1_13:96289346-96294343:-|nuORF ENST00000466027.1_1_13:96289346-96294343:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1064.416015625 1 1064.75541 1063.74814 0.49043 0.00052219 -4.0863 -0.0043509 -3.5959 -0.0038287 1064.751241919483 30.347 0.49738 30.266 29.999 30.496 -0.080429 22 18 2 0 0 0 0.21798 1 15628 15628 2.3027 0 1 1831700 48100 13748 32453 33196 56064 56064 0.21881225955507944 PVLLSDMLYC 10 Unmodified _PVLLSDMLYC_ 0 0 0 nc|ENSG00000146373|Q8TC41-2|RNF217 nc|ENSG00000146373|Q8TC41-2|RNF217 nc|ENSG00000146373|Q8TC41-2|RNF217 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2846069335938 2 577.285228 1152.5559 NaN NaN NaN NaN NaN NaN NaN 66.823 1 66.823 66.323 67.323 0 0 0 0 0.96627 1 37269 37269 4.3292 0 1 48101 16255 32454 33197 56065 56065 -0.014272255691366809 PVLPRPSSTF 10 Unmodified _PVLPRPSSTF_ 0 0 0 ENSG00000138411|ENST00000644978|HECW2;ENST00000462290.1_1_2:197122524-197143302:-|nuORF ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.26513671875 2 550.808574 1099.60259 0.4047 0.00022291 0.23686 0.00013047 0.64156 0.00035338 550.8086207174367 40.188 0.33799 39.891 39.735 40.073 -0.29716 28 15 3 0 0 0 0.23412 1 21162 21162 9.3831 2.0939 1 2726500 48102 5050 32455 33198 56066 56066 0.056777183686335775 PVLQAADILL 10 Unmodified _PVLQAADILL_ 0 0 0 nc|ENSG00000116874|Q9UGM6-2|WARS2;ENSG00000116874|ENST00000235521|WARS2 nc|ENSG00000116874|Q9UGM6-2|WARS2 nc|ENSG00000116874|Q9UGM6-2|WARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.821044921875 2 526.82115 1051.62775 0.092963 4.8975E-05 -1.1437 -0.00060253 -1.0508 -0.00055356 526.8204837821025 33.893 0.17728 33.922 33.816 33.993 0.028934 13 7 2 0 0 0 0.69126 1 17869 17869 1.6526 1.6526 1 1542600 48103 3264 32456 33199 56067 56067 0.10399773171229754 PVLRVLLSADL 11 Unmodified _PVLRVLLSADL_ 0 0 0 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 ENSG00000181045|ENST00000361193|SLC26A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8777770996094 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 30.368 1 30.368 29.868 30.868 0 0 0 0 0.93954 1 15775 15775 2.8433 0.10809 1 48104 8947 32457 33200 56068 56068 0.14403109016711824 PVLSHEPLLV 10 Unmodified _PVLSHEPLLV_ 0 0 0 REV__ENSG00000188011|ENST00000343216|RTP5 REV__ENSG00000188011|ENST00000343216|RTP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3283081054688 2 552.326599 1102.63865 0.43499 0.00024025 0.6933 0.00038293 1.1283 0.00062318 552.3270983208752 63.304 0.28209 62.817 62.709 62.992 -0.48617 29 12 3 0 0 0 0.46514 1 34520 34520 18.146 2.8979 1 1926000 + 48105 23680 32458 33201 56069 56069 0.09143175545523263 PVLSHWPF 8 Unmodified _PVLSHWPF_ 0 0 0 REV__ENSG00000079432|ENST00000681038|CIC REV__ENSG00000079432|ENST00000681038|CIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7591552734375 2 491.760895 981.507237 NaN NaN NaN NaN NaN NaN NaN 77.54 1 77.057 76.557 77.557 -0.4826 0 0 0 0.9706 1 42450 42450 6.3541 0 1 + 48106 17649 32459 33202 56070 56070 0.015744099682706292 PVLSLAPAP 9 Unmodified _PVLSLAPAP_ 0 0 0 ENSG00000177508|ENST00000329734|IRX3;ENST00000558180.2_1_16:54318400-54319510:-|nuORF ENSG00000177508|ENST00000329734|IRX3 ENSG00000177508|ENST00000329734|IRX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 864.5187377929688 1 864.518931 863.511654 -0.16129 -0.00013944 0.010715 9.2633E-06 -0.15057 -0.00013017 864.5187929204893 92.877 0.53891 92.419 92.189 92.728 -0.4574 77 27 4 0 0 0 0.2001 1 50874 50874 23.148 5.0134 1 15994000 48107 8691 32460 33203 56071 56071 0.07443874391162808 PVLSLAPAP 9 Unmodified _PVLSLAPAP_ 0 0 0 ENSG00000177508|ENST00000329734|IRX3;ENST00000558180.2_1_16:54318400-54319510:-|nuORF ENSG00000177508|ENST00000329734|IRX3 ENSG00000177508|ENST00000329734|IRX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 866.7332763671875 1 864.518931 863.511654 0.28751 0.00024856 0.15385 0.00013301 0.44136 0.00038156 864.5191085215874 99.895 0.28251 93.719 93.588 93.87 -6.1757 47 20 3 0 0 0 0.28047 1 66701 66701 18.135 3.5533 1 201580000 48108 8691 32460 33203 56072 56072 0.07443874391162808 PVLSYRNR 8 Unmodified _PVLSYRNR_ 0 0 0 ENST00000369306.7_1_1:145517283-145517373:+|nuORF ENST00000369306.7_1_1:145517283-145517373:+|nuORF ENST00000369306.7_1_1:145517283-145517373:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7861633300781 2 502.785433 1003.55631 0.038283 1.9248E-05 3.4204 0.0017197 3.4587 0.001739 502.78753774641064 92.052 0.23134 91.571 91.465 91.697 -0.48092 18 12 2 0 0 0 8.7369 1 50301 50301 6.3541 0 1 592430 48109 12303 32461 33204 56073 56073 0.05467698257223219 PVLSYYHQD 9 Unmodified _PVLSYYHQD_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7669067382812 2 561.266739 1120.51892 -0.040407 -2.2679E-05 1.8781 0.0010541 1.8377 0.0010314 561.2674568190363 32.62 0.18393 32.491 32.416 32.6 -0.12915 11 7 2 0 0 0 0.21834 1 17004 17004 1.8442 0.19162 1 1112600 48110 5160 32462 33205 56074 56074 -0.03651437799044288 PVLVILKVKV 10 Unmodified _PVLVILKVKV_ 0 0 0 REV__ENSG00000158769|ENST00000368026|F11R REV__ENSG00000158769|ENST00000368026|F11R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1107.953857421875 1 1107.78638 1106.7791 0.98405 0.0010901 -2.4333 -0.0026956 -1.4493 -0.0016055 1107.7824690184063 79.859 0.085236 73.684 73.642 73.727 -6.1757 6 4 2 0 0 0 0.23821 1 52362 52362 1.8442 1.3859 1 7054000 + 48111 21441 32463 33206 56075 56075 0.22998379269756697 PVLWRSHF 8 Unmodified _PVLWRSHF_ 0 0 0 REV__ENSG00000229637|ENST00000422730|PRAC2 REV__ENSG00000229637|ENST00000422730|PRAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2733154296875 2 521.285069 1040.55558 0.43126 0.00022481 -0.69007 -0.00035972 -0.25881 -0.00013491 521.2846196832394 83.206 0.65185 82.709 82.448 83.099 -0.49751 88 26 5 0 0 0 0.76859 1 45432 45432 11.114 5.8838 1 52551000 + 48112 24403 32464 33207 56076 56076 0.036929036081801314 PVMCDRPCF 9 Unmodified _PVMCDRPCF_ 0 0 0 REV__ENST00000508232.1_1_6:43603609-43604431:+|nuORF REV__ENST00000508232.1_1_6:43603609-43604431:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2266235351562 2 534.22719 1066.43983 -0.095636 -5.1091E-05 -0.12713 -6.7918E-05 -0.22277 -0.00011901 534.2271774286012 23.235 0.46898 23.235 22.938 23.407 0 49 23 3 0 0 0 0.53666 1 11737 11737 5.2307 0.90143 1 839200 + 48113 19461 32465 33208 56077 56077 -0.09073447620858133 PVMKWCCI 8 Unmodified _PVMKWCCI_ 0 0 0 REV__ENSG00000172244|ENST00000306862|C5orf34;REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2368774414062 2 490.231744 978.448936 -0.60222 -0.00029523 0.59368 0.00029104 -0.0085457 -4.1893E-06 490.2314266148529 27.845 0.44864 27.845 27.552 28.001 0 57 21 4 0 0 0 0.72953 1 14314 14314 14.582 2.9414 1 6849800 + 48114 28084;22635 32466 33209 56078 56078 -0.041150542645141286 PVMLRLQL 8 Unmodified _PVMLRLQL_ 0 0 0 REV__nc|ENSG00000087111|Q96S52-2|PIGS REV__nc|ENSG00000087111|Q96S52-2|PIGS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2995910644531 2 485.29933 968.584108 NaN NaN NaN NaN NaN NaN NaN 45.722 1 45.397 44.897 45.897 -0.32425 0 0 0 0.9249 1 24441 24441 15.768 0 1 + 48115 17777 32467 33210 56079 56079 0.09855885193098857 PVMPNMIFI 9 Unmodified _PVMPNMIFI_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2789306640625 2 531.279749 1060.54494 0.34772 0.00018474 -0.42286 -0.00022466 -0.075138 -3.9919E-05 531.279454810893 86.216 0.33553 86.216 86.043 86.379 0 32 16 3 0 0 0 0.54444 1 47703 47703 4.756 0.42677 1 819010 48116 10696;10680 32468 33211 56080 56080 0.01709416847211287 PVMTSLTVV 9 Unmodified _PVMTSLTVV_ 0 0 0 REV__ENST00000599227.5_2_19:58772663-58772768:+|nuORF REV__ENST00000599227.5_2_19:58772663-58772768:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7677307128906 2 473.767529 945.520504 0.99425 0.00047104 -0.088603 -4.1977E-05 0.90565 0.00042907 473.76765552570026 72.018 0.50607 65.842 65.714 66.22 -6.1757 56 26 3 0 0 0 0.045537 1 47084 47084 46.921 2.5139 1 37194000 + 48117 29239 32469 33212 56081 56081 0.04556479965344806 PVNFYDKYF 9 Unmodified _PVNFYDKYF_ 0 0 0 REV__nc|ENSG00000141279|P55786-2|NPEPPS REV__nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1936950683594 3 398.193963 1191.56006 NaN NaN NaN NaN NaN NaN NaN 23.252 1 23.252 22.752 23.752 0 0 0 0 0.84369 1 11847 11847 1.1933 0.41681 1 + 48118 20524 32470 33213 56082 56082 -0.028056767595899146 PVNFYDKYF 9 Unmodified _PVNFYDKYF_ 0 0 0 REV__nc|ENSG00000141279|P55786-2|NPEPPS REV__nc|ENSG00000141279|P55786-2|NPEPPS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.5475463867188 3 398.193963 1191.56006 0.82201 0.00032732 -1.9277 -0.00076762 -1.1057 -0.0004403 398.1927341300853 22.341 0.26378 19.606 19.374 19.638 -2.7348 20 13 2 0 0 0 0.21367 1 11953 11953 1.0715 0 1 2400700 + 48119 20524 32470 33213 56083 56083 -0.028056767595899146 PVNKDLLMI 9 Unmodified _PVNKDLLMI_ 0 0 0 REV__nc|ENSG00000167657|O43293-2|DAPK3 REV__nc|ENSG00000167657|O43293-2|DAPK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8004150390625 2 521.801903 1041.58925 0.93989 0.00049043 2.6874 0.0014023 3.6272 0.0018927 521.8016264146934 70.113 0.53754 63.937 63.648 64.186 -6.1757 70 30 4 0 0 0 0.05447 1 45691 45691 43.858 2.0187 1 44227000 + 48120 22237 32471 33214 56084 56084 0.0701214426505885 PVNKQGLQL 9 Unmodified _PVNKQGLQL_ 0 0 0 ENSG00000160883|ENST00000292432|HK3 ENSG00000160883|ENST00000292432|HK3 ENSG00000160883|ENST00000292432|HK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7966918945312 2 498.795466 995.57638 -0.48836 -0.00024359 4.2004 0.0020951 3.712 0.0018515 498.79860056237504 55.54 0.34919 55.54 55.262 55.611 0 20 15 2 0 0 0 0.095405 1 30851 30851 34.102 5.9292 1 1202400 48121 6765 32472 33215 56085 56085 0.07841449197189831 PVNLFNIPGF 10 Unmodified _PVNLFNIPGF_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.3412475585938 2 559.305667 1116.59678 1.2431 0.00069529 -0.60214 -0.00033678 0.64099 0.00035851 559.305487202704 61.142 0.42217 54.995 54.793 55.215 -6.1478 34 21 2 0 0 0 0.22507 1 39230 39230 7.2892 0.56607 1 33840000 48122 1249 32473 33216 56086 56086 0.04314619856995705 PVNPWLLT 8 Unmodified _PVNPWLLT_ 0 0 0 REV__ENST00000367051.5_1_1:207793326-207795335:+|nuORF REV__ENST00000367051.5_1_1:207793326-207795335:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 939.5296630859375 1 939.52983 938.522553 0.66192 0.00062189 1.5267 0.0014344 2.1886 0.0020563 939.5310228488368 67.948 0.10224 67.973 67.921 68.023 0.025146 5 4 2 0 0 0 0.78849 1 37326 37326 9.3474 1.4373 1 523660 + 48123 25970 32474 33217 56087 56087 0.05083276765458322 PVNQAELIC 9 Unmodified _PVNQAELIC_ 0 0 0 REV__ENSG00000143061|ENST00000369486|IGSF3 REV__ENSG00000143061|ENST00000369486|IGSF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7537231445312 2 493.75241 985.490267 0.33483 0.00016532 -3.13 -0.0015455 -2.7952 -0.0013801 493.7518211065838 67.179 0.39525 67.179 67.064 67.459 0 24 16 2 0 0 0 0.41742 1 37479 37479 11.64 0 1 654970 + 48124 20601 32475 33218 56088 56088 -0.003058786998508367 PVNQRACHI 9 Unmodified _PVNQRACHI_ 0 0 0 nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1;ENST00000589195.1_1_17:42307151-42307565:-|nuORF;nc|ENSG00000185634|Q6S5L8-2|SHC4;ENSG00000185634|ENST00000332408|SHC4 nc|ENSG00000160691|P29353-5|SHC1 nc|ENSG00000160691|P29353-5|SHC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2693481445312 2 519.269093 1036.52363 0.61038 0.00031695 1.7326 0.00089966 2.3429 0.0012166 519.2698037772586 75.628 0.3814 75.151 74.945 75.327 -0.47714 54 19 4 0 0 0 0.28047 1 41418 41418 18.135 4.6271 1 6636200 48125 6743 32476 33219 56089 56089 0.006831678627349902 PVNVEELAF 9 Unmodified _PVNVEELAF_ 0 0 0 nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;ENST00000472429.1_1_21:30971125-31311818:-|nuORF nc|ENSG00000171189|P39086-2|GRIK1 nc|ENSG00000171189|P39086-2|GRIK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2666625976562 2 509.266207 1016.51786 0.78951 0.00040207 -1.1355 -0.00057827 -0.34599 -0.0001762 509.26636776270055 55.663 0.4122 49.742 49.525 49.937 -5.9211 41 24 3 0 0 0 0.28047 1 35429 35429 18.135 1.0221 1 38226000 48126 8075 32477 33220 56090 56090 0.010263478320553077 PVNVQFIHTQY 11 Unmodified _PVNVQFIHTQY_ 0 0 0 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 REV__nc|ENSG00000168843|Q8N475-3|FSTL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.3413696289062 2 673.348594 1344.68264 0.28422 0.00019138 -2.65 -0.0017843 -2.3657 -0.001593 673.8484671008383 58.148 0.34831 57.658 57.471 57.819 -0.48974 29 16 2 0 0 0 0.68427 1 31684 31684 5.7319 1.7875 1 3235400 + 48127 22351 32478 33221 56091 56091 0.02408159971855639 PVNWIPWLRVQ 11 Unmodified _PVNWIPWLRVQ_ 0 0 0 ENST00000252597.7_2_19:17374874-17375065:-|nuORF ENST00000252597.7_2_19:17374874-17375065:-|nuORF ENST00000252597.7_2_19:17374874-17375065:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3958740234375 2 704.398422 1406.78229 -0.012116 -8.5344E-06 -0.11848 -8.3461E-05 -0.1306 -9.1995E-05 704.3983496917787 93.734 0.90093 93.734 93.344 94.245 0 137 56 3 0 0 0 0.74157 1 51839 51839 0.35063 0 1 926800 48128 11149 32479 33222 56092 56092 0.09517022376439854 PVNWIPWLRVQ 11 Unmodified _PVNWIPWLRVQ_ 0 0 0 ENST00000252597.7_2_19:17374874-17375065:-|nuORF ENST00000252597.7_2_19:17374874-17375065:-|nuORF ENST00000252597.7_2_19:17374874-17375065:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.3977661132812 2 704.398422 1406.78229 0.29721 0.00020935 -0.10951 -7.7136E-05 0.1877 0.00013222 704.3981865010386 94.33 1.0448 93.909 93.348 94.393 -0.42044 129 55 3 0 0 0 0.72952 1 51628 51628 1.4819 0 1 1037600 48129 11149 32479 33222 56093 56093 0.09517022376439854 PVPAPSLT 8 Unmodified _PVPAPSLT_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MSMS AL20221201_MKP_PDAC_01 4 391.2255859375 2 391.226354 780.438155 NaN NaN NaN NaN NaN NaN NaN 85.819 1 79.644 79.144 80.144 -6.1757 0 0 0 0.95607 1 56544 56544 9.3474 0 1 + 48130 17670 32480 33223 56094 56094 0.03915325948696591 PVPAYFRPW 9 Unmodified _PVPAYFRPW_ 0 0 0 ENST00000567562.5_1_16:20814828-20817484:-|nuORF ENST00000567562.5_1_16:20814828-20817484:-|nuORF ENST00000567562.5_1_16:20814828-20817484:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.2029724121094 3 378.202793 1131.58655 NaN NaN NaN NaN NaN NaN NaN 50.146 1 44.607 44.107 45.107 -5.5391 0 0 0 0.70111 1 31416 31416 9.3831 3.6513 1 48131 15439 32481 33224 56095 56095 0.026020569224101564 PVPCIERSCDA 11 Unmodified _PVPCIERSCDA_ 0 0 0 REV__nc|ENSG00000041982|P24821-4|TNC REV__nc|ENSG00000041982|P24821-4|TNC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8471069335938 3 397.182853 1188.52673 NaN NaN NaN NaN NaN NaN NaN 95.131 1 94.763 94.263 95.263 -0.36814 0 0 0 0.94144 1 51965 51965 0.50596 0 1 + 48132 17200 32482 33225 56096 56096 -0.059993698654352556 PVPCPPLD 8 Unmodified _PVPCPPLD_ 0 0 0 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.430419921875 1 837.417502 836.410226 0.56129 0.00047004 -0.67658 -0.00056658 -0.11529 -9.6545E-05 837.4169292059187 46.344 0.35183 46.344 46.149 46.501 0 34 16 3 0 0 0 0.71616 1 25216 25216 15.768 0 1 5206200 48133 8387 32483 33226 56097 56097 -0.014523203030421428 PVPCWQSYPK 10 Unmodified _PVPCWQSYPK_ 0 0 0 ENST00000481445.1_1_X:77158242-77160802:+|nuORF ENST00000481445.1_1_X:77158242-77160802:+|nuORF ENST00000481445.1_1_X:77158242-77160802:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7960205078125 2 602.794609 1203.57467 -0.57835 -0.00034862 0.30895 0.00018623 -0.26939 -0.00016239 602.7949205148041 40.842 2.0167 40.842 40.491 42.507 0 440 122 7 0 0 0 0.42068 1 22963 22963 20.454 3.3407 1 14353000000 48134 14083 32484 33227 56098 56098 -0.01897927883101147 PVPDCPSESVC 11 Unmodified _PVPDCPSESVC_ 0 0 0 REV__ENST00000329146.8_1_14:105946048-105946348:+|nuORF REV__ENST00000329146.8_1_14:105946048-105946348:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8217163085938 2 566.736099 1131.45765 -0.5292 -0.00029992 3.4346 0.0019465 2.9054 0.0016466 566.7380823995272 33.011 0.10118 33.011 32.948 33.049 0 7 4 2 0 0 0 0.30139 1 17286 17286 5.7319 3.6721 1 881280 + 48135 25584 32485 33228 56099 56099 -0.10282453884997267 PVPDEQSVI 9 Unmodified _PVPDEQSVI_ 0 0 0 REV__ENST00000525337.1_1_11:59522139-59522391:-|nuORF REV__ENST00000525337.1_1_11:59522139-59522391:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2509765625 2 492.25584 982.497126 0.81012 0.00039879 -0.056582 -2.7853E-05 0.75354 0.00037093 492.255945796411 54.306 0.50196 54.306 54.051 54.553 0 60 22 3 0 0 0 0.37804 1 30025 30025 13.508 2.684 1 18185000 + 48136 28353 32486 33229 56100 56100 0.005177574523941075 PVPEKGTSDPL 11 Unmodified _PVPEKGTSDPL_ 0 0 0 REV__ENST00000542260.1_1_12:6483977-6484648:-|nuORF REV__ENST00000542260.1_1_12:6483977-6484648:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5352478027344 3 380.536278 1138.587 -0.45284 -0.00017232 1.1631 0.00044259 0.71023 0.00027027 380.53671659017255 20.462 0.15616 20.462 20.386 20.542 0 70 28 3 0 0 0 0.71341 1 10263 10263 1.2148 0.021489 1 10708000 + 48137 28611 32487 33230 56101 56101 0.02325387060977846 PVPEPRDLL 9 Unmodified _PVPEPRDLL_ 0 0 0 nc|ENSG00000077942|P23142-4|FBLN1 nc|ENSG00000077942|P23142-4|FBLN1 nc|ENSG00000077942|P23142-4|FBLN1 MSMS AL20221201_MKP_PDAC_01 4 518.296142578125 2 518.295299 1034.57605 NaN NaN NaN NaN NaN NaN NaN 57.083 1 51.106 50.606 51.606 -5.9769 0 0 0 0.15549 1 36489 36489 36.127 3.8215 1 48138 16054 32488 33231 56102 56102 0.060140294773418645 PVPETVRSY 9 Unmodified _PVPETVRSY_ 0 0 0 nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP nc|ENSG00000126838|P20742-2|PZP nc|ENSG00000126838|P20742-2|PZP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7816772460938 2 524.277106 1046.53966 0.53046 0.00027811 0.70661 0.00037046 1.2371 0.00064857 525.279620861888 72.61 0.61826 72.134 71.878 72.496 -0.47609 45 28 3 0 0 0 0.16226 1 39752 39752 26.884 8.7373 1 2123800 48139 3975 32489 33232 56103 56103 0.018251525806363134 PVPETVRSY 9 Unmodified _PVPETVRSY_ 0 0 0 nc|ENSG00000126838|P20742-2|PZP;ENSG00000126838|ENST00000261336|PZP nc|ENSG00000126838|P20742-2|PZP nc|ENSG00000126838|P20742-2|PZP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.277106 1046.53966 0.4226 0.00022156 0.8245 0.00043226 1.2471 0.00065383 524.7787610181758 72.139 0.18582 72.139 72.054 72.24 0 0.0023658 9.4513E-05 NaN 26.884 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 640930 48140 3975 32489 33232 0.018251525806363134 PVPFTNYIL 9 Unmodified _PVPFTNYIL_ 0 0 0 PRSS27-TPSB2|1|fusion;ENSG00000172382|ENST00000302641|PRSS27 PRSS27-TPSB2|1|fusion PRSS27-TPSB2|1|fusion MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.7947387695312 2 532.294768 1062.57498 0.71128 0.00037861 2.2764 0.0012117 2.9877 0.0015903 532.2961860535476 68.376 0.17625 62.2 62.129 62.306 -6.1757 14 10 2 0 0 0 0.16785 1 44694 44694 23.148 6.2061 1 32661000 48141 8212 32490 33233 56104 56104 0.04619815108435432 PVPGFGYA 8 Unmodified _PVPGFGYA_ 0 0 0 ENST00000582193.5_2_17:37356602-37357495:+|nuORF ENST00000582193.5_2_17:37356602-37357495:+|nuORF ENST00000582193.5_2_17:37356602-37357495:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4061279296875 1 807.403566 806.39629 0.91289 0.00073707 1.795 0.0014493 2.7079 0.0021864 807.4048675421224 82.952 0.44473 83.014 82.788 83.232 0.062004 22 16 2 0 0 0 0.70131 1 45967 45967 17.087 2.5049 1 4322400 48142 15568 32491 33234 56105 56105 -0.014652297398242808 PVPHLLHQ 8 Unmodified _PVPHLLHQ_ 0 0 0 ENST00000313080.8_1_17:74473760-74475179:-|nuORF ENST00000313080.8_1_17:74473760-74475179:-|nuORF ENST00000313080.8_1_17:74473760-74475179:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7723693847656 2 470.771794 939.529036 0.19836 9.3381E-05 1.2381 0.00058288 1.4365 0.00067626 470.77214065174644 67.698 0.82266 67.716 67.258 68.081 0.018036 70 40 4 0 0 0 0.64035 1 37245 37245 22.453 3.0136 1 6943900 48143 11709 32492 33235 56106 56106 0.0568521471685699 PVPKLLPHF 9 Unmodified _PVPKLLPHF_ 0 0 0 nc|nan|Q49AR2-3|C5orf22;ENST00000504866.1_1_5:31545783-31553006:+|nuORF nc|nan|Q49AR2-3|C5orf22 nc|nan|Q49AR2-3|C5orf22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3225708007812 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 16.249 1 16.25 15.75 16.75 0.0010548 0 0 0 0.85737 1 8006 8006 0.6015 0 1 48144 14503 32493 33236 56107 56107 0.10623817961868554 PVPKVIWI 8 Unmodified _PVPKVIWI_ 0 0 0 REV__ENST00000525353.5_1_11:85361339-85366664:+|nuORF REV__ENST00000525353.5_1_11:85361339-85366664:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.3073425292969 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 106.19 1 100.01 99.513 100.51 -6.1757 0 0 0 0.97444 1 71093 71093 0.69038 0 1 + 48145 28354 32494 33237 56108 56108 0.11805030558900853 PVPLEAWRPGQ 11 Unmodified _PVPLEAWRPGQ_ 0 0 0 ENSG00000167601|ENST00000301178|AXL;ENST00000599659.5_1_19:41725288-41749617:+|nuORF ENSG00000167601|ENST00000301178|AXL ENSG00000167601|ENST00000301178|AXL MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.8291015625 2 625.33803 1248.66151 0.79283 0.00049578 -0.64599 -0.00040396 0.14684 9.1824E-05 625.3374899904348 83.439 0.56215 77.263 77.005 77.567 -6.1757 63 29 3 0 0 0 0.50515 1 55052 55052 16.149 5.3252 1 102590000 48146 7634 32495 33238 56109 56109 0.04712194662965885 PVPLGRKHC 9 Unmodified _PVPLGRKHC_ 0 0 0 REV__ENST00000303991.4_1_5:176025423-176025792:-|nuORF REV__ENST00000303991.4_1_5:176025423-176025792:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7845153808594 2 503.784379 1005.5542 0.22833 0.00011503 0.94128 0.0004742 1.1696 0.00058923 503.78483927122494 79.729 0.59703 79.784 79.495 80.092 0.054977 63 23 3 0 0 0 0.2001 2 44163 44060;44163 23.148 23.148 1 11107000 + 48147 25354 32496 33239 56110;56111 56111 0.051649462477712405 PVPLMSLRT 9 Unmodified _PVPLMSLRT_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7799072265625 2 507.294245 1012.57394 0.60976 0.00030933 1.4968 0.0007593 2.1065 0.0010686 507.2950362847671 101.91 0.09919 95.734 95.68 95.78 -6.1757 8 4 3 0 0 0 0.18882 1 68392 68392 15.847 1.2655 1 3746900 48148 7692 32497 33240 56112 56112 0.06815277467876513 PVPPEQQFI 9 Unmodified _PVPPEQQFI_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7821655273438 2 527.782025 1053.5495 0.27553 0.00014542 0.0067568 3.5661E-06 0.28228 0.00014898 527.7819827080465 53.957 0.32008 53.491 53.306 53.626 -0.46664 39 15 3 0 0 0 0.10925 1 29283 29283 32.117 8.9685 1 14072000 48149 702 32498 33241 56113 56113 0.024863405860060084 PVPPSIVSSSY 11 Unmodified _PVPPSIVSSSY_ 0 0 0 REV__ENST00000535220.1_1_12:6933100-6934099:+|nuORF REV__ENST00000535220.1_1_12:6933100-6934099:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.200439453125 3 378.201007 1131.58119 NaN NaN NaN NaN NaN NaN NaN 46.534 1 41.454 40.954 41.954 -5.0805 0 0 0 0.76159 1 28770 28770 7.4771 0.37534 1 + 48150 28520 32499 33242 56114 56114 0.02066288549303863 PVPSAFRLSSV 11 Unmodified _PVPSAFRLSSV_ 0 0 0 REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF REV__ENST00000225777.7_1_17:76168296-76168503:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 580.3262329101562 2 580.327131 1158.63971 NaN NaN NaN NaN NaN NaN NaN 18.32 1 15.698 15.198 16.198 -2.6215 0 0 0 0.92174 1 9642 9642 2.2828 1.0894 1 + 48151 24786 32500 33243 56115 56115 0.0667338991440829 PVPSPRRF 8 Unmodified _PVPSPRRF_ 0 0 0 nc|ENSG00000156504|Q7Z309-5|PABIR2;ENST00000478384.5_1_X:133905317-133923123:-|nuORF;nc|ENSG00000156504|Q7Z309-4|PABIR2;nc|ENSG00000156504|Q7Z309|PABIR2;nc|ENSG00000156504|Q7Z309-2|PABIR2;nc|ENSG00000156504|Q7Z309-3|PABIR2;ENSG00000156504|ENST00000343004|PABIR2 nc|ENSG00000156504|Q7Z309-5|PABIR2 nc|ENSG00000156504|Q7Z309-5|PABIR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7320251464844 2 478.277244 954.539935 0.053081 2.5388E-05 -1.2111 -0.00057925 -1.158 -0.00055387 478.2767207672226 51.833 0.22012 51.833 51.71 51.93 0 18 9 2 0 0 0 8.7369 1 28634 28634 10.183 0.10947 1 5085700 48152 6460 32501 33244 56116 56116 0.060846170911418085 PVPSPRRF 8 Unmodified _PVPSPRRF_ 0 0 0 nc|ENSG00000156504|Q7Z309-5|PABIR2;ENST00000478384.5_1_X:133905317-133923123:-|nuORF;nc|ENSG00000156504|Q7Z309-4|PABIR2;nc|ENSG00000156504|Q7Z309|PABIR2;nc|ENSG00000156504|Q7Z309-2|PABIR2;nc|ENSG00000156504|Q7Z309-3|PABIR2;ENSG00000156504|ENST00000343004|PABIR2 nc|ENSG00000156504|Q7Z309-5|PABIR2 nc|ENSG00000156504|Q7Z309-5|PABIR2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 478.277244 954.539935 0.54842 0.0002623 -2.6678 -0.0012759 -2.1193 -0.0010136 478.2758590930629 58.162 0.11345 52.135 52.078 52.192 -6.0275 0.15078 -0.0011403 NaN 10.183 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 7485500 48153 6460 32501 33244 0.060846170911418085 PVPSPSLVQCF 11 Unmodified _PVPSPSLVQCF_ 0 0 0 ENST00000565074.1_1_15:75501395-75501497:+|nuORF ENST00000565074.1_1_15:75501395-75501497:+|nuORF ENST00000565074.1_1_15:75501395-75501497:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8724365234375 3 391.870603 1172.58998 1.173 0.00045966 2.8716 0.0011253 4.0446 0.001585 391.8719155190504 19.152 0.26147 16.496 16.285 16.546 -2.6564 28 17 2 0 0 0 0.65108 1 10083 10083 4.4062 0 1 2205600 48154 15397 32502 33245 56117 56117 0.0105893891411597 PVPSRYGLAL 10 Unmodified _PVPSRYGLAL_ 0 0 0 REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.812255859375 2 536.811116 1071.60768 0.28678 0.00015395 -1.3194 -0.00070829 -1.0327 -0.00055434 536.8120532312778 61.936 0.30993 61.903 61.772 62.082 -0.032787 28 15 3 0 0 0 0.54684 1 33867 33867 13.906 0 1 3991500 + 48155 27112 32503 33246 56118 56118 0.07474022231258459 PVPTDVSLY 9 Unmodified _PVPTDVSLY_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.5236206054688 1 990.514239 989.506963 -0.079278 -7.8526E-05 0.4371 0.00043295 0.35782 0.00035443 990.5147703531321 65.029 0.31619 65.029 64.878 65.194 0 44 14 4 0 0 0 0.61381 1 36325 36325 0.52476 0 1 6750900 48156 5994 32504 33247 56119 56119 0.011789454577751712 PVPTKNFNRY 10 Unmodified _PVPTKNFNRY_ 0 0 0 REV__ENSG00000164591|ENST00000517768|MYOZ3 REV__ENSG00000164591|ENST00000517768|MYOZ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8901062011719 3 412.555895 1234.64586 -0.46356 -0.00019125 0.66853 0.00027581 0.20497 8.4562E-05 412.556060093766 24.622 0.60264 24.622 24.301 24.904 0 55 32 2 0 0 0 0.68719 1 12586 12586 2.086 0.63089 1 1134600 + 48157 21925 32505 33248 56120 56120 0.037919081459449444 PVPVNSLE 8 Unmodified _PVPVNSLE_ 0 0 0 REV__nc|ENSG00000276293|P78356-2|PIP4K2B REV__nc|ENSG00000276293|P78356-2|PIP4K2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.462646484375 1 854.46181 853.454533 0.47115 0.00040258 -0.3376 -0.00028847 0.13355 0.00011411 854.4615591356259 60.433 0.23608 60.433 60.322 60.559 0 15 10 2 0 0 0 0.37649 1 33708 33708 46.921 2.5139 1 875950 + 48158 24659 32506 33249 56121 56121 0.02194407114814112 PVQCAPVSRSL 11 Unmodified _PVQCAPVSRSL_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MSMS AL20221201_MKP_PDAC_01 4 386.2098999023438 3 386.209619 1155.60703 NaN NaN NaN NaN NaN NaN NaN 31.405 1 27.709 27.209 28.209 -3.6958 0 0 0 0.69464 1 17781 17781 9.7643 0.788 1 + 48159 21121 32507 33250 56122 56122 0.03544859519934107 PVQEEGPS 8 Unmodified _PVQEEGPS_ 0 0 0 REV__ENSG00000088808|ENST00000202556|PPP1R13B REV__ENSG00000088808|ENST00000202556|PPP1R13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.6984558105469 2 421.698158 841.381762 -0.3849 -0.00016231 0.12814 5.4037E-05 -0.25676 -0.00010828 421.69830413636663 48.398 0.32418 48.398 48.231 48.555 0 27 15 2 0 0 0 0.70294 1 26638 26638 16.942 3.4344 1 4044100 + 48160 17810 32508 33251 56123 56123 -0.045273466786056815 PVQELTYD 8 Unmodified _PVQELTYD_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4631958007812 1 964.462204 963.454927 0.6382 0.00061552 -0.34179 -0.00032964 0.29642 0.00028588 964.4620141619555 46.422 0.25037 46.422 46.294 46.544 0 19 11 2 0 0 0 0.80143 1 25439 25439 5.7604 0 1 2076500 48161 3488 32509 33252 56124 56124 -0.028262179560101686 PVQEPKDQAF 10 Unmodified _PVQEPKDQAF_ 0 0 0 ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA ENSG00000137996|ENST00000370128|RTCA ENSG00000137996|ENST00000370128|RTCA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.3389892578125 2 579.793121 1157.57169 0.32468 0.00018825 3.7009 0.0021457 4.0255 0.002334 579.7946456536861 63.394 0.17612 62.908 62.793 62.969 -0.48617 11 7 2 0 0 0 0.23566 1 34535 34535 7.2892 0.56607 1 440050 48162 5000 32510 33253 56125 56125 -0.0007947973624595761 PVQGGGDPI 9 Unmodified _PVQGGGDPI_ 0 0 0 ENSG00000119737|ENST00000394705|GPR75 ENSG00000119737|ENST00000394705|GPR75 ENSG00000119737|ENST00000394705|GPR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.4271240234375 1 839.425758 838.418482 0.1831 0.0001537 1.0281 0.00086303 1.2112 0.0010167 839.42639186017 67.237 0.35052 67.237 67.016 67.366 0 26 14 2 0 0 0 0.16226 1 37434 37434 26.884 5.137 1 1381000 48163 3465 32511 33254 56126 56126 -0.007190500620367857 PVQGQLVPL 9 Unmodified _PVQGQLVPL_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7855529785156 2 475.78711 949.559667 NaN NaN NaN NaN NaN NaN NaN 62.975 1 62.489 61.989 62.989 -0.48617 0 0 0 0.18911 1 34338 34338 32.117 7.4431 1 + 48164 24045 32512 33255 56127 56127 0.08286948311229025 PVQGSELQI 9 Unmodified _PVQGSELQI_ 0 0 0 REV__ENSG00000153207|ENST00000648844|AHCTF1 REV__ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.76318359375 2 485.763832 969.513111 0.18854 9.1586E-05 0.26782 0.0001301 0.45636 0.00022168 485.76383134052463 61.759 0.28829 61.759 61.597 61.885 0 29 12 3 0 0 0 0.2143 1 34479 34479 21.747 5.8995 1 2138500 + 48165 21159 32513 33256 56128 56128 0.027134636892810704 PVQGYKKE 8 Unmodified _PVQGYKKE_ 0 0 0 REV__ENSG00000164326|ENST00000296777|CARTPT REV__ENSG00000164326|ENST00000296777|CARTPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2565307617188 2 474.761092 947.507631 0.76694 0.00036411 -0.48818 -0.00023177 0.27876 0.00013234 474.76107749685775 28.677 0.48224 25.529 25.262 25.744 -3.1482 59 23 4 0 0 0 0.72953 1 15888 15888 14.582 2.0501 1 122420000 + 48166 21906 32514 33257 56129 56129 0.03177784897479796 PVQKPKLL 8 Unmodified _PVQKPKLL_ 0 0 0 nc|ENSG00000165828|Q96NZ9-2|PRAP1;nc|ENSG00000165828|Q96NZ9-4|PRAP1;ENSG00000165828|ENST00000433452|PRAP1;nc|ENSG00000165828|Q96NZ9-3|PRAP1 nc|ENSG00000165828|Q96NZ9-2|PRAP1 nc|ENSG00000165828|Q96NZ9-2|PRAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.2389221191406 2 461.807845 921.601138 1.3631 0.00062947 -0.028795 -1.3298E-05 1.3343 0.00061617 461.8078495487894 35.95 0.30082 31.758 31.613 31.914 -4.1928 27 18 2 0 0 0 8.7369 1 21017 21017 13.508 4.9146 1 4335800 48167 7396 32515 33258 56130 56130 0.13720129070577514 PVQLFEAAL 9 Unmodified _PVQLFEAAL_ 0 0 0 REV__ENSG00000099958|ENST00000318109|DERL3 REV__ENSG00000099958|ENST00000318109|DERL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2809143066406 2 494.279118 986.543683 1.1865 0.00058648 -0.96031 -0.00047466 0.22624 0.00011182 494.2787837863968 89.495 0.82626 83.319 83.022 83.848 -6.1757 134 45 4 0 0 0 0.28047 1 59326 59326 18.135 4.6271 1 97650000 + 48168 17995 32516 33259 56131 56131 0.04987242074309961 PVQLLPQVSGA 11 Unmodified _PVQLLPQVSGA_ 0 0 0 ENST00000234420.9_1_2:48010350-48010428:+|nuORF ENST00000234420.9_1_2:48010350-48010428:+|nuORF ENST00000234420.9_1_2:48010350-48010428:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3220825195312 2 554.821681 1107.62881 -0.083258 -4.6193E-05 3.717 0.0020623 3.6338 0.0020161 554.8252924247527 36.624 0.50842 36.646 36.434 36.942 0.021545 75 23 5 0 0 0 0.5229 1 19477 19477 15.248 0 1 16931000 48169 11081 32517 33260 56132 56132 0.07929987540137517 PVQPKIKLL 9 Unmodified _PVQPKIKLL_ 0 0 0 REV__ENST00000296424.8_1_4:104017377-104020969:-|nuORF REV__ENST00000296424.8_1_4:104017377-104020969:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3505859375 2 518.349877 1034.6852 NaN NaN NaN NaN NaN NaN NaN 77.907 1 77.424 76.924 77.924 -0.4826 0 0 0 0.84564 1 42658 42658 2.0598 0.21551 1 + 48170 25270 32518 33261 56133 56133 0.1692466016745584 PVQQSDPL 8 Unmodified _PVQQSDPL_ 0 0 0 REV__nc|ENSG00000159788|O14924-2|RGS12 REV__nc|ENSG00000159788|O14924-2|RGS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2294616699219 2 442.229625 882.444697 NaN NaN NaN NaN NaN NaN NaN 39.289 1 39.289 38.789 39.789 0 0 0 0 0.93066 1 21044 21044 14.582 2.0501 1 + 48171 21500 32519 33262 56134 56134 -0.0012278089055826058 PVQRDIQLI 9 Unmodified _PVQRDIQLI_ 0 0 0 REV__ENST00000175756.9_1_2:131131718-131131856:+|nuORF REV__ENST00000175756.9_1_2:131131718-131131856:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 541.322021484375 2 541.321848 1080.62914 NaN NaN NaN NaN NaN NaN NaN 62.828 1 56.653 56.153 57.153 -6.1757 0 0 0 0.098163 1 40567 40567 43.858 7.3521 1 + 48172 24718 32520 33263 56135 56135 0.09205407259992171 PVQRHVTM 8 Oxidation (M) _PVQRHVTM(Oxidation (M))_ PVQRHVTM(1) PVQRHVTM(100) 0 0 1 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20221201_MKP_PDAC_01 4 492.2598266601562 2 492.258194 982.501834 NaN NaN NaN NaN NaN NaN NaN 18.187 1 15.565 15.065 16.065 -2.6215 0 0 0 0.068755 1 9566 9566 99.799 45.025 1 48173 9762 32521 33264 56136 56136 1569 0.009883631141633487 PVQRLLERH 9 Unmodified _PVQRLLERH_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1;ENST00000471043.1_1_7:43436315-43477745:+|nuORF;ENST00000492310.5_1_7:43153648-43477745:+|nuORF nc|ENSG00000002746|Q76N89-2|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 MSMS AL20221201_MKP_PDAC_01 4 383.2268371582031 3 383.228001 1146.66217 NaN NaN NaN NaN NaN NaN NaN 78.224 1 72.048 71.548 72.548 -6.1757 0 0 0 0.50124 1 51193 51193 10.8 1.2555 1 48174 265 32522 33265 56137 56137 0.0947103410269392 PVQSHSRMQF 10 Unmodified _PVQSHSRMQF_ 0 0 0 REV__MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|17|1|anti-sense REV__MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|17|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7915649414062 2 608.798214 1215.58188 0.57339 0.00034908 -2.0828 -0.001268 -1.5094 -0.00091894 608.7967575151254 52.167 0.41074 51.733 51.531 51.942 -0.43367 63 20 4 0 0 0 0.54684 1 28254 28254 13.906 0 1 15444000 + 48175 29467 32523 33266 56138 56138 -0.017291952826553825 PVQSSTIEL 9 Unmodified _PVQSSTIEL_ 0 0 0 nc|ENSG00000197472|Q8IW36-1|ZNF695 nc|ENSG00000197472|Q8IW36-1|ZNF695 nc|ENSG00000197472|Q8IW36-1|ZNF695 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2640686035156 2 487.263665 972.512776 0.25462 0.00012407 -0.13627 -6.6401E-05 0.11835 5.7667E-05 487.2634586088955 58.888 0.87752 58.888 58.34 59.217 0 108 37 5 0 0 0 0.48152 1 32928 32928 8.5933 0 1 146320000 48176 16487 32524 33267 56139 56139 0.025420439694244124 PVQSSTIEL 9 Unmodified _PVQSSTIEL_ 0 0 0 nc|ENSG00000197472|Q8IW36-1|ZNF695 nc|ENSG00000197472|Q8IW36-1|ZNF695 nc|ENSG00000197472|Q8IW36-1|ZNF695 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2645874023438 2 487.263665 972.512776 0.45598 0.00022218 0.52009 0.00025342 0.97607 0.00047561 487.26372349837817 59.493 0.56822 59.002 58.685 59.253 -0.49079 78 26 4 0 0 0 0.54444 1 32450 32450 4.756 0 1 19759000 48177 16487 32524 33267 56140 56140 0.025420439694244124 PVQSTLISE 9 Unmodified _PVQSTLISE_ 0 0 0 ENSG00000148600|ENST00000623527|CDHR1;ENST00000459673.1_1_10:85972822-85974374:+|nuORF ENSG00000148600|ENST00000623527|CDHR1 ENSG00000148600|ENST00000623527|CDHR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3080749511719 2 487.263665 972.512776 0.63356 0.00030871 -0.23602 -0.000115 0.39755 0.00019371 487.2634600205195 59.077 0.44759 59.016 58.7 59.147 -0.060719 33 21 2 0 0 0 0.15672 1 32170 32170 26.884 1.4843 1 4073800 48178 5946 32525 33268 56141 56141 0.02542043969435781 PVQSYMDAAF 10 Unmodified _PVQSYMDAAF_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.755615234375 2 564.755149 1127.49575 0.65994 0.0003727 0.95714 0.00054055 1.6171 0.00091325 564.7556829514896 68.365 0.32817 67.885 67.725 68.053 -0.48071 20 14 2 0 0 0 0.42068 1 37387 37387 20.454 9.6297 1 1002000 48179 10397 32526 33269 56142 56142 -0.0629019990803954 PVQVGHLV 8 Unmodified _PVQVGHLV_ 0 0 0 REV__ENST00000458018.1_1_3:50357943-50358376:-|nuORF REV__ENST00000458018.1_1_3:50357943-50358376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.75341796875 2 424.75307 847.491587 -0.073032 -3.1021E-05 2.517 0.0010691 2.444 0.0010381 424.7540819170716 30.486 0.96764 30.517 30.091 31.059 0.030106 108 42 3 0 0 0 0.80975 1 15973 15973 0.79363 0 1 16383000 + 48180 27272 32527 33270 56143 56143 0.061741234512510346 PVQVILYVQS 10 Unmodified _PVQVILYVQS_ 0 0 0 REV__ENSG00000185565|ENST00000490035|LSAMP REV__ENSG00000185565|ENST00000490035|LSAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5571594238281 3 382.557013 1144.64921 0.29941 0.00011454 0.065055 2.4887E-05 0.36446 0.00013943 382.5569978478849 41.02 0.3009 40.717 40.563 40.863 -0.30304 38 14 3 0 0 0 0.56707 1 21669 21669 12.856 1.957 1 21063000 + 48181 23509 32528 33271 56144 56144 0.0826715819994206 PVRAVPARAP 10 Unmodified _PVRAVPARAP_ 0 0 0 ENSG00000215193|ENST00000399744|PEX26;nc|ENSG00000215193|Q7Z412-2|PEX26 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7901000976562 2 517.3169 1032.61925 1.8294 0.00094636 -0.096298 -4.9816E-05 1.7331 0.00089654 517.3170965964619 81.987 0.58175 82.048 81.636 82.218 0.060333 69 23 4 0 0 0 0.22667 1 45273 45273 15.847 1.2655 1 14652000 48182 10525 32529 33272 56145 56145 0.10424264045263953 PVRDLSTEM 9 Unmodified _PVRDLSTEM_ 0 0 0 REV__ENST00000504693.2_1_4:116550597-116550759:+|nuORF REV__ENST00000504693.2_1_4:116550597-116550759:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2592163085938 2 524.260599 1046.50665 1.0338 0.00054197 -1.2812 -0.00067168 -0.24742 -0.00012971 524.2608416115951 74.862 0.81249 68.687 68.306 69.119 -6.1757 171 43 5 0 0 0 0.10734 2 49117 48864;49117 32.305 5.4218 1 71197000 + 48183 28058 32530 33273 56146;56147 56147 -0.014747975337513708 PVRDSLSTL 9 Unmodified _PVRDSLSTL_ 0 0 0 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50;ENSG00000151458|ENST00000504087|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7507934570312 2 494.277106 986.53966 -0.10029 -4.9572E-05 0.088966 4.3974E-05 -0.011326 -5.5982E-06 494.27705293763654 34.627 0.18986 34.436 34.351 34.541 -0.19131 16 8 3 0 0 0 0.19298 1 18061 18061 13.508 0 1 2372900 48184 6114 32531 33274 56148 56148 0.04585152580614249 PVRFRPIKG 9 Unmodified _PVRFRPIKG_ 0 0 0 ENSG00000110066|ENST00000304363|KMT5B;nc|ENSG00000110066|Q4FZB7-2|KMT5B;nc|ENSG00000110066|Q4FZB7-4|KMT5B ENSG00000110066|ENST00000304363|KMT5B ENSG00000110066|ENST00000304363|KMT5B MSMS AL20221201_MKP_PDAC_01 4 357.2278442382812 3 357.225821 1068.65563 NaN NaN NaN NaN NaN NaN NaN 92.068 1 85.892 85.392 86.392 -6.1757 0 0 0 0.82739 1 60877 60877 2.4985 0 1 48185 2699 32532 33275 56149 56149 0.12405140941996251 PVRHQLFAE 9 Unmodified _PVRHQLFAE_ 0 0 0 REV__ENST00000559007.5_1_15:64204116-64217024:-|nuORF REV__ENST00000559007.5_1_15:64204116-64217024:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2028503417969 3 366.201452 1095.58253 -0.0050911 -1.8644E-06 2.7248 0.00099781 2.7197 0.00099595 366.20229197430393 17.094 0.14245 17.099 17.017 17.16 0.0050545 18 11 2 0 0 0 0.55144 1 8591 8591 2.4985 0 1 687300 + 48186 28810 32533 33276 56150 56150 0.03855967428717122 PVRPKGGKL 9 Unmodified _PVRPKGGKL_ 0 0 0 SPATA31D1|p.E1303K|1|0.17|ENSG00000214929|chr9:81994377-81994377|G/A|missense_variant SPATA31D1|p.E1303K|1|0.17|ENSG00000214929|chr9:81994377-81994377|G/A|missense_variant SPATA31D1|p.E1303K|1|0.17|ENSG00000214929|chr9:81994377-81994377|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.3095703125 2 476.308544 950.602535 1.599 0.00076163 -1.0998 -0.00052385 0.4992 0.00023777 476.3079426366882 104.09 0.14499 97.91 97.856 98.001 -6.1757 55 33 2 0 0 0 0.59218 1 69726 69726 1.8442 1.1539 1 4868800 48187 30171 32534 33277 56151 56151 0.12525763159328562 PVRPSCPVSCC 11 Unmodified _PVRPSCPVSCC_ 0 0 0 REV__ENST00000300648.6_1_12:120593516-120594359:-|nuORF REV__ENST00000300648.6_1_12:120593516-120594359:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.2554931640625 2 574.256479 1146.49841 1.0985 0.00063085 -0.14045 -8.0653E-05 0.9581 0.00055019 574.256408696439 66.205 0.316 66.214 66.101 66.417 0.0095596 37 15 3 0 0 0 0.68427 1 36313 36313 5.7319 0.50118 1 5921400 + 48188 25310 32535 33278 56152 56152 -0.0689839104636576 PVRQGALQ 8 Unmodified _PVRQGALQ_ 0 0 0 nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB;ENST00000378566.5_1_9:35106854-35108271:-|nuORF nc|ENSG00000005238|Q7L5A3-2|ATOSB nc|ENSG00000005238|Q7L5A3-2|ATOSB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8835144042969 2 434.753601 867.49265 -0.28132 -0.00012231 0.88092 0.00038298 0.59959 0.00026068 434.7540539372652 34.011 0.24891 33.819 33.668 33.917 -0.19131 13 9 2 0 0 0 8.7369 1 17710 17710 9.3474 1.4373 1 1648400 48189 304 32536 33279 56153 56153 0.053603378201387386 PVRRAPRCV 9 Unmodified _PVRRAPRCV_ 0 0 0 REV__ENSG00000189169|ENST00000400365|KRTAP10-12 REV__ENSG00000189169|ENST00000400365|KRTAP10-12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7882080078125 2 527.308552 1052.60255 4.091 0.0021572 0.90506 0.00047725 4.9961 0.0026345 527.3075644853791 99.241 0.13828 99.213 99.164 99.302 -0.028282 6 4 2 0 0 0 0.21242 1 55103 55103 5.2307 0 1 345490 + + 48190 16856 32537 33280 56154 56154 0.07835439887662687 PVRRPPLPG 9 Unmodified _PVRRPPLPG_ 0 0 0 ENSG00000176040|ENST00000452346|TMPRSS7 ENSG00000176040|ENST00000452346|TMPRSS7 ENSG00000176040|ENST00000452346|TMPRSS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8070373535156 2 494.806168 987.597784 NaN NaN NaN NaN NaN NaN NaN 26.164 1 26.19 25.69 26.69 0.026951 0 0 0 0.7453 1 13565 13565 7.9102 3.1541 1 48191 8559 32538 33281 56155 56155 0.10348879016567025 PVRRQLCHLH 10 Unmodified _PVRRQLCHLH_ 0 0 0 REV__ENST00000176183.5_1_11:639911-640686:+|nuORF REV__ENST00000176183.5_1_11:639911-640686:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2385864257812 3 420.236503 1257.68768 NaN NaN NaN NaN NaN NaN NaN 72.859 1 72.383 71.883 72.883 -0.47588 0 0 0 0.98914 1 39872 39872 0.77653 0.27058 1 + 48192 24719 32539 33282 56156 56156 0.06914185353480207 PVRRSLKE 8 Unmodified _PVRRSLKE_ 0 0 0 ENSG00000074356|ENST00000389005|NCBP3 ENSG00000074356|ENST00000389005|NCBP3 ENSG00000074356|ENST00000389005|NCBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.80322265625 2 492.801083 983.587613 1.0014 0.00049347 0.96286 0.0004745 1.9642 0.00096797 492.80150984952024 30.389 0.41643 26.892 26.678 27.094 -3.497 45 20 3 0 0 0 0.61462 1 17090 17090 24.674 6.5389 1 33104000 48193 1124 32540 33283 56157 56157 0.09516271291329303 PVRTHFDP 8 Unmodified _PVRTHFDP_ 0 0 0 ENST00000369503.8_1_1:116574121-116577852:+|nuORF;ENST00000369502.1_1_1:116574085-116574238:+|nuORF ENST00000369503.8_1_1:116574121-116577852:+|nuORF ENST00000369503.8_1_1:116574121-116577852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.5556945800781 2 484.751059 967.487565 NaN NaN NaN NaN NaN NaN NaN 41.653 1 41.653 41.153 42.153 0 0 0 0 0.93587 1 22491 22491 13.508 0 1 48194 12309 32541 33284 56158 56158 0.0025203395751987046 PVRTLLSWL 9 Unmodified _PVRTLLSWL_ 0 0 0 ENST00000373699.5_1_6:36839520-36839613:-|nuORF ENST00000373699.5_1_6:36839520-36839613:-|nuORF ENST00000373699.5_1_6:36839520-36839613:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2215576171875 3 362.221965 1083.64407 -0.055642 -2.0155E-05 0.15876 5.7505E-05 0.10311 3.735E-05 362.2219497033344 39.505 0.21553 39.208 39.049 39.264 -0.29716 18 9 3 0 0 0 0.54213 1 20825 20825 4.897 4.897 1 1573300 48195 12422 32542 33285 56159 56159 0.10558899127977384 PVRVLITAETF 11 Unmodified _PVRVLITAETF_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.362060546875 2 623.363713 1244.71287 NaN NaN NaN NaN NaN NaN NaN 59.027 1 58.966 58.466 59.466 -0.060719 0 0 0 0.93893 1 32162 32162 3.2813 0.28607 1 48196 2693 32543 33286 56160 56160 0.10030518637017849 PVRWQGAA 8 Unmodified _PVRWQGAA_ 0 0 0 REV__ENST00000372080.6_1_9:135937408-135940032:+|nuORF REV__ENST00000372080.6_1_9:135937408-135940032:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7409973144531 2 442.740494 883.466435 1.1149 0.00049363 -0.81226 -0.00035962 0.30267 0.00013401 442.7401005797362 49.569 0.31438 49.521 49.35 49.665 -0.048828 25 15 2 0 0 0 0.67481 1 26747 26747 19.439 1.304 1 2614300 + 48197 26103 32544 33287 56161 56161 0.020040686486595405 PVSAFLLL 8 Unmodified _PVSAFLLL_ 0 0 0 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2679443359375 2 430.268022 858.521491 1.0535 0.00045327 -0.91744 -0.00039475 0.13602 5.8526E-05 430.26761797577495 100.71 0.095695 94.538 94.488 94.584 -6.1757 10 6 2 0 0 0 0.17881 1 67452 67452 78.445 11.409 1 13371000 48198 2436 32545 33288 56162 56162 0.0865706239658266 PVSAKMFR 8 Unmodified _PVSAKMFR_ 0 0 0 REV__ENST00000533238.5_1_11:122929516-122932032:-|nuORF REV__ENST00000533238.5_1_11:122929516-122932032:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 468.7919616699219 2 468.260205 934.505857 0.62873 0.00029441 -3.6118 -0.0016912 -2.983 -0.0013968 468.25792101381893 100.56 0.18143 94.381 94.291 94.472 -6.1757 19 11 2 0 0 0 8.7369 1 67319 67319 14.582 4.3983 1 61911000 + 48199 28477 32546 33289 56163 56163 0.03598452607877789 PVSAVHASCTI 11 Unmodified _PVSAVHASCTI_ 0 0 0 REV__ENSG00000131899|ENST00000316843|LLGL1 REV__ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1857604980469 3 362.186703 1083.53828 0.0049385 1.7887E-06 -1.7814 -0.00064521 -1.7765 -0.00064342 362.1858543454022 38.137 0.25951 37.865 37.782 38.042 -0.27133 20 11 2 0 0 0 0.62014 1 20068 20068 10.315 5.0184 1 1540300 + 48200 19817 32547 33290 56164 56164 -0.00014804779789301392 PVSDLRSPL 9 Unmodified _PVSDLRSPL_ 0 0 0 REV__ENSG00000001629|ENST00000265742|ANKIB1 REV__ENSG00000001629|ENST00000265742|ANKIB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2795715332031 2 492.279649 982.544745 NaN NaN NaN NaN NaN NaN NaN 69.355 1 68.876 68.376 69.376 -0.47903 0 0 0 0.82739 1 37913 37913 4.3292 0 1 + 48201 16930 32548 33291 56165 56165 0.05277456443241135 PVSDSIRQGSS 11 Unmodified _PVSDSIRQGSS_ 0 0 0 REV__ENSG00000124203|ENST00000371030|ZNF831 REV__ENSG00000124203|ENST00000371030|ZNF831 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7538452148438 2 566.783284 1131.55202 0.50969 0.00028888 -3.6424 -0.0020645 -3.1328 -0.0017756 566.7811879685623 99.064 0.18977 98.871 98.752 98.942 -0.19321 10 6 2 0 0 0 0.30139 1 54072 54072 5.7319 2.1354 1 523140 + 48202 19428 32549 33292 56166 56166 -0.008498557469692969 PVSDVFVHGS 10 Unmodified _PVSDVFVHGS_ 0 0 0 REV__ENST00000520983.5_1_8:28651295-28747426:-|nuORF REV__ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7569580078125 2 522.261456 1042.50836 0.15897 8.3023E-05 -3.7501 -0.0019585 -3.5911 -0.0018755 522.2596594870611 68.833 0.5177 68.353 68.202 68.719 -0.48071 33 22 2 0 0 0 0.22149 1 37620 37620 20.454 8.8133 1 3977100 + 48203 18347 32550 33293 56167 56167 -0.011194204534604069 PVSEDQDPL 9 Unmodified _PVSEDQDPL_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.2363891601562 2 500.235104 998.455655 NaN NaN NaN NaN NaN NaN NaN 85.183 1 79.008 78.508 79.508 -6.1757 0 0 0 0.12337 1 56086 56086 39.957 9.3208 1 48204 844 32551 33294 56168 56168 -0.043634233069496986 PVSEDSGNPAL 11 Unmodified _PVSEDSGNPAL_ 0 0 0 REV__ENSG00000103742|ENST00000352385|IGDCC4 REV__ENSG00000103742|ENST00000352385|IGDCC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.261474609375 2 543.259111 1084.50367 1.0528 0.00057196 2.2909 0.0012445 3.3437 0.0018165 543.260007742229 100.33 0.24016 94.153 94.014 94.254 -6.1757 34 15 3 0 0 0 0.32631 1 67024 67024 25.399 3.6527 1 120180000 + 48205 18324 32552 33295 56169 56169 -0.0352034938689485 PVSEKPNDY 9 Unmodified _PVSEKPNDY_ 0 0 0 ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.752685546875 2 524.750921 1047.48729 0.47275 0.00024808 0.55118 0.00028923 1.0239 0.00053731 524.7511252113763 77.407 0.43414 77.407 77.186 77.62 0 79 31 4 0 0 0 0.28023 1 42964 42964 18.146 0.011366 1 19134000 48206 12204 32553 33296 56170 56170 -0.0345543055300368 PVSEKPNDY 9 Unmodified _PVSEKPNDY_ 0 0 0 ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.750921 1047.48729 0.47275 0.00024808 0.55118 0.00028923 1.0239 0.00053731 524.7511252113763 77.407 0.43414 77.407 77.186 77.62 0 -0.011706 -0.00025589 NaN 18.146 79 31 4 NaN NaN NaN NaN 0 NaN NaN 0 19134000 48207 12204 32553 33296 -0.0345543055300368 PVSEKPNDY 9 Unmodified _PVSEKPNDY_ 0 0 0 ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF ENST00000366609.3_1_1:234742844-234742886:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.750921 1047.48729 0.070121 3.6796E-05 1.7872 0.00093785 1.8574 0.00097465 524.7518433574725 77.38 0.54491 77.431 77.084 77.629 0.05011 0.011706 0.0010414 NaN 18.146 31 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2816800 48208 12204 32553 33296 -0.0345543055300368 PVSERHIV 8 Unmodified _PVSERHIV_ 0 0 0 REV__ENSG00000162415|ENST00000359600|ZSWIM5 REV__ENSG00000162415|ENST00000359600|ZSWIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.7671813964844 2 468.766709 935.518865 -0.034933 -1.6376E-05 0.65164 0.00030547 0.61671 0.00028909 468.76703331617205 38.089 0.27516 38.106 37.963 38.239 0.01704 19 12 2 0 0 0 0.36356 1 20257 20257 48.346 4.4876 1 1713900 + 48209 21645 32554 33297 56171 56171 0.04852606991619268 PVSESFCVLSE 11 Unmodified _PVSESFCVLSE_ 0 0 0 ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF ENST00000533428.2_1_15:97300531-97301611:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.780029296875 2 598.778822 1195.54309 0.44155 0.00026439 1.1531 0.00069046 1.5947 0.00095485 598.779411964632 94.384 0.273 93.963 93.838 94.111 -0.42044 23 14 2 0 0 0 0.68427 1 51503 51503 5.7319 0 1 594580 48210 14938 32555 33298 56172 56172 -0.04685965427665906 PVSESIFML 9 Unmodified _PVSESIFML_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2;ENST00000494224.1_1_1:118455281-118462980:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7631530761719 2 511.764986 1021.51542 0.2799 0.00014324 -3.2294 -0.0016527 -2.9495 -0.0015094 511.7624800167946 77.512 0.26257 77.512 77.339 77.602 0 51 24 3 0 0 0 0.078417 1 43061 43061 38.151 13.477 1 6771300 48211 9831 32556 33299 56173 56173 0.0055217610274667095 PVSESIFML 9 Unmodified _PVSESIFML_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2;ENST00000494224.1_1_1:118455281-118462980:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.7622680664062 2 511.764986 1021.51542 NaN NaN NaN NaN NaN NaN NaN 85.101 1 78.925 78.425 79.425 -6.1757 0 0 0 0.15618 1 56029 56029 36.044 5.8194 1 48212 9831 32556 33299 56174 56174 0.0055217610274667095 PVSESIFML 9 Unmodified _PVSESIFML_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2;ENST00000494224.1_1_1:118455281-118462980:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.7633972167969 2 511.764986 1021.51542 NaN NaN NaN NaN NaN NaN NaN 85.282 1 79.106 78.606 79.606 -6.1757 0 0 0 0.13852 1 56155 56155 38.151 13.477 1 48213 9831 32556 33299 56175 56175 0.0055217610274667095 PVSESIFML 9 Unmodified _PVSESIFML_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2;ENST00000494224.1_1_1:118455281-118462980:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.7638244628906 2 511.764986 1021.51542 NaN NaN NaN NaN NaN NaN NaN 85.472 1 79.296 78.796 79.796 -6.1757 0 0 0 0.13852 1 56294 56294 38.151 13.477 1 48214 9831 32556 33299 56176 56176 0.0055217610274667095 PVSESISDAAS 11 Unmodified _PVSESISDAAS_ 0 0 0 REV__ENST00000542371.1_1_12:6973128-6975238:+|nuORF REV__ENST00000542371.1_1_12:6973128-6975238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7526245117188 2 531.751118 1061.48768 0.54031 0.00028731 0.024108 1.2819E-05 0.56442 0.00030013 531.7522750493038 72.358 0.39621 71.882 71.686 72.083 -0.47609 34 18 2 0 0 0 0.46578 1 39582 39582 18.146 2.2992 1 1256900 + 48215 18764 32557 33300 56177 56177 -0.04060055623813241 PVSESWSYY 9 Unmodified _PVSESWSYY_ 0 0 0 REV__ENST00000373864.5_1_1:28339722-28384581:-|nuORF REV__ENST00000373864.5_1_1:28339722-28384581:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.8432006835938 2 559.245472 1116.47639 0.61235 0.00034245 1.4828 0.00082925 2.0952 0.0011717 559.2463102120973 51.788 0.32803 46.053 45.906 46.234 -5.7345 33 21 2 0 0 0 0.20528 1 32541 32541 2.0598 0 1 58594000 + 48216 26162 32558 33301 56178 56178 -0.07718832927275798 PVSFQCLLLGA 11 Unmodified _PVSFQCLLLGA_ 0 0 0 ENST00000493646.1_1_10:102746302-102746494:-|nuORF ENST00000493646.1_1_10:102746302-102746494:-|nuORF ENST00000493646.1_1_10:102746302-102746494:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7949829101562 2 574.312635 1146.61072 0.32593 0.00018718 -0.99841 -0.0005734 -0.67248 -0.00038622 574.8145790801779 42.349 0.17278 42.34 42.271 42.444 -0.0088196 10 7 2 0 0 0 0.29414 1 22668 22668 10.074 0.6908 1 8433600 48217 14319 32559 33302 56179 56179 0.043275292938005805 PVSFQSCICI 10 Unmodified _PVSFQSCICI_ 0 0 0 REV__nc|ENSG00000164308|Q6P179-4|ERAP2 REV__nc|ENSG00000164308|Q6P179-4|ERAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8639526367188 2 548.76192 1095.50929 0.31862 0.00017485 -2.61 -0.0014323 -2.2914 -0.0012574 548.7604380083033 67.681 0.30453 67.699 67.609 67.914 0.018028 23 14 2 0 0 0 0.17615 1 37218 37218 26.884 0 1 2807900 + 48218 21903 32560 33303 56180 56180 -0.03464665400429112 PVSFRYLC 8 Unmodified _PVSFRYLC_ 0 0 0 ENST00000340934.9_1_1:222908062-222908212:+|nuORF ENST00000340934.9_1_1:222908062-222908212:+|nuORF ENST00000340934.9_1_1:222908062-222908212:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.7522888183594 2 492.752213 983.489873 0.88797 0.00043755 -2.9974 -0.001477 -2.1094 -0.0010394 492.7505434666374 52.738 0.21967 52.675 52.542 52.761 -0.063423 16 10 2 0 0 0 0.75262 1 28585 28585 12.532 3.9383 1 1442200 48219 11961 32561 33304 56181 56181 -0.002532536290345888 PVSFSWYYVLR 11 Unmodified _PVSFSWYYVLR_ 0 0 0 REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6 REV__nc|ENSG00000177119|Q4KMQ2-3|ANO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.9158630371094 3 472.915201 1415.72377 -0.15953 -7.5444E-05 1.1045 0.00052235 0.94499 0.0004469 472.9157476015306 21.872 0.25363 21.872 21.746 22 0 97 38 3 0 0 0 0.73992 1 11139 11139 0.50596 0 1 8672200 + 48220 22965 32562 33305 56182 56182 0.032539210113100125 PVSGGGGGGGQ 11 Unmodified _PVSGGGGGGGQ_ 0 0 0 REV__nc|ENSG00000099783|P52272-2|HNRNPM REV__nc|ENSG00000099783|P52272-2|HNRNPM MSMS AL20221201_MKP_PDAC_01 4 415.1954345703125 2 415.193574 828.372594 NaN NaN NaN NaN NaN NaN NaN 48.397 1 43.163 42.663 43.663 -5.2339 0 0 0 0.93224 1 30138 30138 5.7319 0.97584 1 + 48221 17983 32563 33306 56183 56183 -0.048456952442620604 PVSGSVTIPVL 11 Unmodified _PVSGSVTIPVL_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.8187255859375 2 534.818607 1067.62266 0.68154 0.0003645 -0.21077 -0.00011272 0.47076 0.00025177 534.8183675635024 60.493 0.30215 60.493 60.322 60.625 0 30 13 3 0 0 0 0.35659 1 33749 33749 37.974 3.5723 1 1999600 48222 6806 32564 33307 56184 56184 0.09155469308620923 PVSHRSWRSL 10 Unmodified _PVSHRSWRSL_ 0 0 0 REV__ENST00000340491.8_1_20:35090686-35090824:+|nuORF REV__ENST00000340491.8_1_20:35090686-35090824:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.8917236328125 3 408.891389 1223.65234 NaN NaN NaN NaN NaN NaN NaN 16.309 1 13.752 13.252 14.252 -2.557 0 0 0 0.9731 1 8441 8441 3.5871 0 1 + 48223 25693 32565 33308 56185 56185 0.04945846097325557 PVSIAFLI 8 Unmodified _PVSIAFLI_ 0 0 0 ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT ENSG00000165102|ENST00000379644|HGSNAT ENSG00000165102|ENST00000379644|HGSNAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 859.5302734375 1 859.528767 858.521491 2.4692 0.0021224 1.4017 0.0012048 3.8709 0.0033272 859.5299884109648 95.987 0.21503 95.991 95.842 96.057 0.004158 10 7 2 0 0 0 0.21786 1 53335 53335 67.035 0 1 1521800 48224 7291 32566 33309 56186 56186 0.0865706239658266 PVSLFEPA 8 Unmodified _PVSLFEPA_ 0 0 0 REV__ENSG00000154217|ENST00000581322|PITPNC1 REV__ENSG00000154217|ENST00000581322|PITPNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4567260742188 1 859.455996 858.448719 -0.15779 -0.00013562 0.50425 0.00043338 0.34646 0.00029777 859.4560878946165 94.139 0.26254 93.719 93.593 93.856 -0.42043 22 15 2 0 0 0 0.65867 1 51424 51424 20.871 5.103 1 556150 + 48225 21213 32567 33310 56187 56187 0.013833086031354469 PVSLGSHALF 10 Unmodified _PVSLGSHALF_ 0 0 0 ENST00000367204.5_1_1:204095493-204095874:+|nuORF ENST00000367204.5_1_1:204095493-204095874:+|nuORF ENST00000367204.5_1_1:204095493-204095874:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2432861328125 2 514.282192 1026.54983 0.96861 0.00049814 0.20303 0.00010442 1.1716 0.00060256 514.28238788486 50.808 0.45614 45.159 44.941 45.397 -5.649 67 27 3 0 0 0 0.54684 1 31761 31761 13.906 1.3745 1 115880000 48226 12225 32568 33311 56188 56188 0.037617603058379245 PVSLIFGYV 9 Unmodified _PVSLIFGYV_ 0 0 0 REV__nc|ENSG00000101464|Q9H490-2|PIGU REV__nc|ENSG00000101464|Q9H490-2|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.5706787109375 1 994.560795 993.553519 1.2228 0.0012162 -0.31756 -0.00031584 0.90525 0.00090033 994.5604844432328 100.12 0.31785 93.946 93.804 94.122 -6.1757 46 19 4 0 0 0 0.2001 1 66873 66873 23.148 5.0134 1 231110000 + 48227 18178 32569 33312 56189 56189 0.05648430079713762 PVSLPPDAAD 10 Unmodified _PVSLPPDAAD_ 0 0 0 ENST00000243776.10_1_2:220403755-220404097:-|nuORF ENST00000243776.10_1_2:220403755-220404097:-|nuORF ENST00000243776.10_1_2:220403755-220404097:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.7664184570312 2 491.248015 980.481476 1.2964 0.00063688 -1.3371 -0.00065685 -0.040653 -1.9971E-05 491.2471033974188 59.113 0.35401 53.039 52.779 53.133 -6.0745 34 19 2 0 0 0 0.22941 1 37800 37800 13.906 7.5519 1 13611000 48228 11112 32570 33313 56190 56190 -0.009545290646656213 PVSMAAPF 8 Unmodified _PVSMAAPF_ 0 0 0 ENSG00000143458|ENST00000368918|GABPB2;ENST00000467551.1_1_1:151065823-151090440:+|nuORF ENSG00000143458|ENST00000368918|GABPB2 ENSG00000143458|ENST00000368918|GABPB2 MSMS AL20221201_MKP_PDAC_01 4 409.9052734375 2 410.207107 818.399661 NaN NaN NaN NaN NaN NaN NaN 68.887 1 62.711 62.211 63.211 -6.1757 0 0 0 0.94749 1 44977 44977 11.114 0 1 48229 5515 32571 33314 56191 56191 -0.016803029574589345 PVSMDQCEQHN 11 Unmodified _PVSMDQCEQHN_ 0 0 0 ENSG00000144229|ENST00000409968|THSD7B ENSG00000144229|ENST00000409968|THSD7B ENSG00000144229|ENST00000409968|THSD7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.842041015625 3 429.841267 1286.50197 -0.88212 -0.00037917 0.16265 6.9915E-05 -0.71946 -0.00030926 430.1761224205812 77.894 0.30948 77.411 77.143 77.452 -0.4826 47 16 4 0 0 0 0.67922 1 42638 42638 2.8433 0 1 4499200 48230 5592 32572 33315 56192 56192 -0.12982049738820933 PVSMPPKM 8 Oxidation (M) _PVSM(Oxidation (M))PPKM_ PVSM(0.944)PPKM(0.056) PVSM(12)PPKM(-12) 0 0 1 ENSG00000141968|ENST00000602142|VAV1 ENSG00000141968|ENST00000602142|VAV1 ENSG00000141968|ENST00000602142|VAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7254638671875 2 451.727349 901.440145 -0.06093 -2.7524E-05 -3.7761 -0.0017058 -3.837 -0.0017333 451.725735229327 54.535 0.15546 54.068 53.968 54.124 -0.46664 12 7 2 0 0 0 0.40035 1 29568 29568 44.407 8.3628 2 888470 48231 5384 32573 33316 56193 56193 992 -0.01451704629323558 PVSMSHPG 8 Unmodified _PVSMSHPG_ 0 0 0 REV__ENST00000484822.1_1_9:137293491-137293848:+|nuORF REV__ENST00000484822.1_1_9:137293491-137293848:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.1931457519531 2 406.191988 810.369423 NaN NaN NaN NaN NaN NaN NaN 11.952 1 9.4703 8.9703 9.9703 -2.482 0 0 0 0.97444 1 6021 6021 2.8892 0 1 + 48232 23570 32574 33317 56194 56194 -0.04334661622635849 PVSNMHKFWEN 11 Unmodified _PVSNMHKFWEN_ 0 0 0 REV__nc|ENSG00000111581|P57740-3|NUP107 REV__nc|ENSG00000111581|P57740-3|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 694.3427734375 2 694.824429 1387.63431 0.32671 0.00022701 -4.3973 -0.0030553 -4.0706 -0.0028283 695.323157601826 94.151 0.19397 93.731 93.616 93.81 -0.42044 13 11 2 0 0 0 0.69316 1 51436 51436 4.897 3.0528 1 714350 + 48233 18755 32575 33318 56195 56195 -0.044006569396742634 PVSNPWNLF 9 Unmodified _PVSNPWNLF_ 0 0 0 REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2738647460938 2 537.274367 1072.53418 0.27968 0.00015027 -0.91943 -0.00049399 -0.63975 -0.00034372 537.2736645412261 63.682 0.17244 63.196 63.082 63.254 -0.48617 10 7 2 0 0 0 0.28047 1 34755 34755 18.135 0 1 1447500 + 48234 25672 32576 33319 56196 56196 0.0008147378880494216 PVSNPWNLF 9 Unmodified _PVSNPWNLF_ 0 0 0 REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.274367 1072.53418 0.27968 0.00015027 -0.91943 -0.00049399 -0.63975 -0.00034372 537.2736645412261 63.682 0.17244 63.196 63.082 63.254 -0.48617 -0.036562 -0.00044655 NaN 18.135 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1447500 + 48235 25672 32576 33319 0.0008147378880494216 PVSNPWNLF 9 Unmodified _PVSNPWNLF_ 0 0 0 REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF REV__ENST00000338435.8_2_2:191765387-191766742:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.274367 1072.53418 0.46628 0.00025052 -0.41584 -0.00022342 0.05044 2.71E-05 537.2741650345715 63.29 0.31261 63.269 63.129 63.442 -0.021614 0.036562 9.4578E-05 NaN 18.135 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3246900 + 48236 25672 32576 33319 0.0008147378880494216 PVSPKPSPTF 10 Unmodified _PVSPKPSPTF_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5466613769531 3 352.862325 1055.56515 -0.26773 -9.4473E-05 3.5222 0.0012429 3.2545 0.0011484 352.8635127170061 35.984 0.18899 36.009 35.928 36.117 0.024971 14 8 2 0 0 0 0.23566 1 19033 19033 3.8763 1.033 1 1556500 48237 6095 32577 33320 56197 56197 0.03958627103043 PVSPTPPYQ 9 Unmodified _PVSPTPPYQ_ 0 0 0 nc|ENSG00000158089|Q96FL9-3|GALNT14 nc|ENSG00000158089|Q96FL9-3|GALNT14 nc|ENSG00000158089|Q96FL9-3|GALNT14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2542114257812 2 493.2531 984.491647 1.0724 0.00052894 -0.0070599 -3.4823E-06 1.0653 0.00052546 493.2532835271684 50.566 0.41863 45.026 44.808 45.226 -5.5391 58 26 3 0 0 0 0.2143 1 31876 31876 21.747 8.2388 1 77902000 48238 16303 32578 33321 56198 56198 -0.001219213394392682 PVSPVALF 8 Unmodified _PVSPVALF_ 0 0 0 ENST00000563555.1_1_16:22268974-22274610:+|nuORF ENST00000563555.1_1_16:22268974-22274610:+|nuORF ENST00000563555.1_1_16:22268974-22274610:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2439575195312 2 415.244547 828.47454 0.15942 6.6199E-05 -0.44377 -0.00018428 -0.28435 -0.00011808 415.2440343792767 74.187 0.51437 74.231 73.985 74.499 0.043976 40 22 2 0 0 0 0.41521 1 40954 40954 42.968 0 1 2628500 48239 15366 32579 33322 56199 56199 0.05344202845435575 PVSPVALF 8 Unmodified _PVSPVALF_ 0 0 0 ENST00000563555.1_1_16:22268974-22274610:+|nuORF ENST00000563555.1_1_16:22268974-22274610:+|nuORF ENST00000563555.1_1_16:22268974-22274610:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2456970214844 2 415.244547 828.47454 1.3144 0.0005458 0.54732 0.00022727 1.8617 0.00077307 415.24484236643315 88.671 0.74909 82.495 81.956 82.706 -6.1757 64 41 2 0 0 0 0.41521 2 58478 58478;58640 42.968 0 1 10607000 48240 15366 32579 33322 56200;56201 56200 0.05344202845435575 PVSPYYASL 9 Unmodified _PVSPYYASL_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7558288574219 2 498.755475 995.496398 0.36677 0.00018293 -0.14059 -7.0119E-05 0.22618 0.00011281 498.75550410552177 75.472 0.27459 75.472 75.297 75.571 0 19 11 2 0 0 0 0.28047 1 41968 41968 18.135 0 1 886790 + 48241 20268 32580 33323 56202 56202 -0.0015303719667372206 PVSQQEFDK 9 Unmodified _PVSQQEFDK_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2628173828125 2 539.264196 1076.51384 NaN NaN NaN NaN NaN NaN NaN 57.658 1 57.658 57.158 58.158 0 0 0 0 0.6557 1 32088 32088 10.824 0 1 48242 979 32581 33324 56203 56203 -0.021357416616638147 PVSRRSAL 8 Unmodified _PVSRRSAL_ 0 0 0 REV__ENST00000310837.8_1_17:39845180-39847075:+|nuORF REV__ENST00000310837.8_1_17:39845180-39847075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2690734863281 2 443.266876 884.519199 1.1168 0.00049504 1.9099 0.0008466 3.0267 0.0013416 443.26763572478785 30.408 0.37208 26.911 26.698 27.07 -3.497 33 18 2 0 0 0 0.6895 1 17098 17098 18.135 0 1 18044000 + 48243 25418 32582 33325 56204 56204 0.07232026711460549 PVSSADTVPL 10 Unmodified _PVSSADTVPL_ 0 0 0 REV__nc|ENSG00000145113|Q99102-3|MUC4 REV__nc|ENSG00000145113|Q99102-3|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2635498046875 2 493.263665 984.512776 0.72967 0.00035992 -0.6714 -0.00033118 0.058266 2.874E-05 493.26348144212767 31.883 0.39405 28.187 28 28.394 -3.6958 52 21 3 0 0 0 0.19662 1 18189 18189 34.102 1.797 1 47529000 + 48244 20754 32583 33326 56205 56205 0.01990043969431099 PVSSDYGAYL 10 Unmodified _PVSSDYGAYL_ 0 0 0 REV__nc|ENSG00000113580|P04150-16|NR3C1 REV__nc|ENSG00000113580|P04150-16|NR3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2536010742188 2 536.253297 1070.49204 0.31988 0.00017154 -0.1235 -6.6227E-05 0.19638 0.00010531 536.2531920621892 94.052 0.60365 93.631 93.37 93.973 -0.42044 84 31 4 0 0 0 0.50944 2 51315 51315;51407 15.847 3.3156 1 10474000 + 48245 18876 32584 33327 56206;56207 56206 -0.04038546410242816 PVSSIYQP 8 Unmodified _PVSSIYQP_ 0 0 0 REV__ENST00000521190.5_1_5:159840839-159846079:-|nuORF REV__ENST00000521190.5_1_5:159840839-159846079:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 890.461669921875 1 890.46181 889.454533 0.22578 0.00020105 -0.56235 -0.00050075 -0.33657 -0.0002997 890.4612144859439 67.648 0.2833 67.648 67.505 67.788 0 24 13 2 0 0 0 0.78849 1 37782 37782 9.3474 1.4373 1 4012400 + 48246 21929 32585 33328 56208 56208 0.005384071148114344 PVSSLLLYI 9 Unmodified _PVSSLLLYI_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.80517578125 2 502.804968 1003.59538 1.2341 0.00062051 -0.65665 -0.00033017 0.57746 0.00029035 502.8049754447481 100.04 0.18357 93.862 93.74 93.924 -6.1757 19 12 2 0 0 0 0.0094915 1 66813 66813 81.864 21.474 1 27161000 48247 1381 32586 33329 56209 56209 0.09372985768220587 PVSSVSSKG 9 Unmodified _PVSSVSSKG_ 0 0 0 ENST00000424808.6_1_8:66582187-66620357:+|nuORF ENST00000424808.6_1_8:66582187-66620357:+|nuORF ENST00000424808.6_1_8:66582187-66620357:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8511047363281 2 424.229625 846.444697 -0.79336 -0.00033657 0.37562 0.00015935 -0.41774 -0.00017722 424.22964933651303 77.689 0.28413 77.206 77.049 77.333 -0.4826 23 12 3 0 0 0 0.20727 1 42579 42579 7.9102 2.6795 1 1393600 48248 13154 32587 33330 56210 56210 0.01533219109444417 PVSTGTLIYL 10 Unmodified _PVSTGTLIYL_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3067626953125 2 532.305332 1062.59611 0.11744 6.2516E-05 0.96734 0.00051492 1.0848 0.00057743 532.3057377650612 69.049 0.20607 68.568 68.421 68.627 -0.48071 13 8 2 0 0 0 0.19662 1 37763 37763 34.102 1.797 1 937860 + 48249 19319 32588 33331 56211 56211 0.0673178041729443 PVSTGTLIYL 10 Unmodified _PVSTGTLIYL_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.305332 1062.59611 0.11744 6.2516E-05 0.96734 0.00051492 1.0848 0.00057743 532.3057377650612 69.049 0.20607 68.568 68.421 68.627 -0.48071 -0.04694 9.9503E-06 NaN 34.102 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 937860 + 48250 19319 32588 33331 0.0673178041729443 PVSTIDQLF 9 Unmodified _PVSTIDQLF_ 0 0 0 ENST00000585307.1_1_18:216449-219004:-|nuORF ENST00000585307.1_1_18:216449-219004:-|nuORF ENST00000585307.1_1_18:216449-219004:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2740478515625 2 510.274032 1018.53351 0.31023 0.0001583 -0.40273 -0.0002055 -0.092503 -4.7202E-05 510.7739885316041 84.496 0.36099 83.997 83.841 84.202 -0.49961 58 16 5 0 0 0 0.2143 1 46213 46213 21.747 0 1 1913700 48251 15604 32589 33332 56212 56212 0.024986343491036678 PVSTMTDMST 10 Unmodified _PVSTMTDMST_ 0 0 0 REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2305297851562 2 535.23065 1068.44675 0.41377 0.00022146 -0.29732 -0.00015913 0.11645 6.2329E-05 535.2303389188783 67.423 0.35888 66.941 66.737 67.096 -0.48218 28 15 2 0 0 0 0.6606 2 36779 36779;36883 7.2892 0 1 2560900 + 48252 28278 32590 33333 56213;56214 56213 -0.08473856259274726 PVSTMTDMST 10 Unmodified _PVSTMTDMST_ 0 0 0 REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.23065 1068.44675 0.41377 0.00022146 -0.29732 -0.00015913 0.11645 6.2329E-05 535.2303389188783 67.423 0.35888 66.941 66.737 67.096 -0.48218 -0.027415 -9.2776E-05 NaN 7.2892 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2560900 + 48253 28278 32590 33333 -0.08473856259274726 PVSTMTDMST 10 Unmodified _PVSTMTDMST_ 0 0 0 REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF REV__ENST00000520450.5_1_5:169483451-169483970:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 535.23065 1068.44675 0.66878 0.00035795 -0.057927 -3.1004E-05 0.61085 0.00032695 535.2305064131197 66.978 0.22679 66.996 66.837 67.064 0.018028 0.027415 0.00016348 NaN 7.2892 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1980400 + 48254 28278 32590 33333 -0.08473856259274726 PVSTPAVLP 9 Unmodified _PVSTPAVLP_ 0 0 0 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.76025390625 2 440.760561 879.506569 -0.053665 -2.3653E-05 -0.38381 -0.00016917 -0.43747 -0.00019282 440.76031652512836 56.277 0.54206 56.277 56.093 56.635 0 64 24 3 0 0 0 0.03327 1 31252 31252 53.576 2.7205 1 26498000 48255 8895 32591 33334 56215 56215 0.06199570528565346 PVSTSRWWSFQ 11 Unmodified _PVSTSRWWSFQ_ 0 0 0 REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8384399414062 2 690.838394 1379.66223 NaN NaN NaN NaN NaN NaN NaN 50.838 1 50.838 50.338 51.338 0 0 0 0 0.85601 1 28046 28046 9.3831 0.63772 1 + 48256 28996 32592 33335 56216 56216 -0.012410106879769955 PVSTTFLAHI 10 Unmodified _PVSTTFLAHI_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5379333496094 3 362.537842 1084.5917 0.007824 2.8365E-06 0.74896 0.00027153 0.75678 0.00027436 362.53813993474256 38.104 0.37972 37.832 37.638 38.018 -0.27133 32 17 2 0 0 0 0.5905 1 20053 20053 10.151 0 1 4923300 48257 8954 32593 33336 56217 56217 0.05278315994382865 PVSWECDCF 9 Unmodified _PVSWECDCF_ 0 0 0 nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF nc|ENSG00000138798|P01133-2|EGF nc|ENSG00000138798|P01133-2|EGF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8817443847656 3 362.473744 1084.3994 -0.3828 -0.00013875 -1.8079 -0.00065533 -2.1907 -0.00079408 362.4731856092342 41.679 0.17445 41.679 41.556 41.731 0 15 8 2 0 0 0 0.21798 1 22473 22473 1.1933 0.23107 1 4955000 48258 5108 32594 33337 56218 56218 -0.1394209073962429 PVSWECDCF 9 Unmodified _PVSWECDCF_ 0 0 0 nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF nc|ENSG00000138798|P01133-2|EGF nc|ENSG00000138798|P01133-2|EGF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8817749023438 3 362.473744 1084.3994 -0.22045 -7.9906E-05 -2.2724 -0.00082369 -2.4929 -0.0009036 362.47277302797875 41.918 0.24093 41.918 41.751 41.992 0 20 12 2 0 0 0 0.21798 1 22596 22596 1.1933 0.23107 1 4273200 48259 5108 32594 33337 56219 56219 -0.1394209073962429 PVSWEHFFHSL 11 Unmodified _PVSWEHFFHSL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3325805664062 2 693.335487 1384.65642 -0.015941 -1.1053E-05 -1.1415 -0.00079146 -1.1575 -0.00080251 693.3345490420868 90.28 0.53216 90.28 89.952 90.484 0 103 35 4 0 0 0 0.71036 1 50006 50006 3.2813 0.54611 1 4168200 48260 6396 32595 33338 56220 56220 -0.020521091996215546 PVSWRPRLYL 10 Unmodified _PVSWRPRLYL_ 0 0 0 REV__ENST00000381365.3_1_17:4804961-4805174:+|nuORF REV__ENST00000381365.3_1_17:4804961-4805174:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3745727539062 2 643.87204 1285.72953 0.62694 0.00040367 0.4744 0.00030545 1.1013 0.00070912 644.3739512570829 75.916 1.468 69.74 68.963 70.431 -6.1757 254 80 4 0 0 0 0.54684 1 49696 49696 13.906 13.906 1 72031000 + 48261 26334 32596 33339 56221 56221 0.0980906431366293 PVSYFDEIT 9 Unmodified _PVSYFDEIT_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7572631835938 2 535.755672 1069.49679 0.56032 0.0003002 0.13469 7.2159E-05 0.69501 0.00037236 535.7558194045168 73.008 0.49106 73.008 72.779 73.271 0 49 22 3 0 0 0 0.48152 1 40590 40590 8.5933 0 1 2442300 + 48262 21641 32597 33340 56222 56222 -0.03517662267495325 PVSYGPRA 8 Unmodified _PVSYGPRA_ 0 0 0 REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF REV__ENST00000419895.3_1_11:112161114-112161165:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.7255554199219 2 423.727052 845.439552 NaN NaN NaN NaN NaN NaN NaN 94.064 1 93.644 93.144 94.144 -0.42044 0 0 0 0.97444 1 51393 51393 2.5775 0 1 + 48263 26825 32598 33341 56223 56223 0.010649600374676993 PVSYLPGPV 9 Unmodified _PVSYLPGPV_ 0 0 0 nc|ENSG00000136699|Q9NXE4-4|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;ENST00000415574.6_1_2:132250659-132263934:+|nuORF nc|ENSG00000136699|Q9NXE4-4|SMPD4 nc|ENSG00000136699|Q9NXE4-4|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5220947265625 1 928.513845 927.506569 0.63084 0.00058574 -1.0963 -0.0010179 -0.46542 -0.00043214 928.512549786511 73.663 0.32692 73.187 72.996 73.323 -0.47588 34 13 3 0 0 0 0.49272 1 40273 40273 7.9102 2.1497 1 6241900 48264 4845 32599 33342 56224 56224 0.03991570528569355 PVTAKAETTL 10 Unmodified _PVTAKAETTL_ 0 0 0 nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4;ADGRG4|p.N1622Tfs*12|1|0.1|ENSG00000156920|chrX:136348566-136348566|A/-|frameshift_variant nc|ENSG00000156920|Q8IZF6-3|ADGRG4 nc|ENSG00000156920|Q8IZF6-3|ADGRG4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7661743164062 2 515.792589 1029.57063 0.91006 0.0004694 -0.7995 -0.00041237 0.11057 5.7031E-05 515.7920012309145 46.139 0.31303 46.139 45.939 46.252 0 28 14 3 0 0 0 0.22941 1 25255 25255 13.906 0 1 5916400 48265 6488 32600 33343 56225 56225 0.057023058948516336 PVTATSSLYI 10 Unmodified _PVTATSSLYI_ 0 0 0 ENSG00000166317|ENST00000394810|SYNPO2L;nc|ENSG00000166317|Q9H987-2|SYNPO2L ENSG00000166317|ENST00000394810|SYNPO2L ENSG00000166317|ENST00000394810|SYNPO2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.751953125 2 526.28714 1050.55973 0.66937 0.00035228 0.57089 0.00030045 1.2403 0.00065273 526.2878948709713 53.011 0.26088 53.011 52.88 53.141 0 23 12 2 0 0 0 0.20941 1 29327 29327 20.454 0 1 3671800 48266 7469 32601 33344 56226 56226 0.03646903520575506 PVTAVALEP 9 Unmodified _PVTAVALEP_ 0 0 0 ENST00000492877.1_1_1:28210997-28211207:+|nuORF ENST00000492877.1_1_1:28210997-28211207:+|nuORF ENST00000492877.1_1_1:28210997-28211207:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.5088500976562 1 896.50876 895.501483 -0.21575 -0.00019342 -0.68811 -0.0006169 -0.90386 -0.00081032 896.5080244355145 63.841 0.27919 63.356 63.193 63.473 -0.48512 22 15 2 0 0 0 0.038285 1 34761 34761 50.855 6.9967 1 2996900 48267 14301 32602 33345 56227 56227 0.04955266665956515 PVTAVALEP 9 Unmodified _PVTAVALEP_ 0 0 0 ENST00000492877.1_1_1:28210997-28211207:+|nuORF ENST00000492877.1_1_1:28210997-28211207:+|nuORF ENST00000492877.1_1_1:28210997-28211207:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.5050048828125 1 896.50876 895.501483 0.59912 0.00053712 -0.4993 -0.00044763 0.099817 8.9486E-05 896.5082826873415 70.454 0.50642 64.279 63.989 64.496 -6.1757 65 27 3 0 0 0 0.026094 2 45879 45864;45879 57.471 9.0154 1 114150000 48268 14301 32602 33345 56228;56229 56229 0.04955266665956515 PVTDFIAP 8 Unmodified _PVTDFIAP_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7;ENST00000299197.6_1_13:95410637-95411129:-|nuORF ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 859.4566040039062 1 859.455996 858.448719 -0.57838 -0.00049709 1.0378 0.00089197 0.45945 0.00039488 859.4568600108059 69.441 0.27647 68.962 68.81 69.086 -0.47903 21 11 2 0 0 0 0.57408 1 37907 37907 28.173 0 1 2200600 48269 7442 32603 33346 56230 56230 0.013833086031468156 PVTELSRIC 9 Unmodified _PVTELSRIC_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1 ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MSMS AL20221201_MKP_PDAC_01 4 509.2713317871094 2 509.273509 1016.53247 NaN NaN NaN NaN NaN NaN NaN 92.658 1 86.482 85.982 86.982 -6.1757 0 0 0 0.46757 1 61282 61282 16.942 3.4344 1 48270 3021 32604 33347 56231 56231 0.024860967085487573 PVTFPDLA 8 Unmodified _PVTFPDLA_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.4644775390625 1 859.455996 858.448719 0.086622 7.4448E-05 -0.71318 -0.00061295 -0.62656 -0.0005385 859.4552412977363 77.49 0.50609 77.49 77.265 77.771 0 111 36 4 0 0 0 0.80143 1 43089 43089 5.7604 0 1 37147000 + 48271 21279 32605 33348 56232 56232 0.013833086031240782 PVTGPIEV 8 Unmodified _PVTGPIEV_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.4566040039062 1 811.455996 810.448719 1.2659 0.0010272 -0.2241 -0.00018185 1.0418 0.00084538 811.4560577824025 64.838 0.37231 58.662 58.525 58.897 -6.1757 29 20 2 0 0 0 0.24071 2 42024 42024;42168 63.563 15.217 1 10949000 48272 6400 32606 33349 56233;56234 56233 0.03591308603131438 PVTIITGYL 9 Unmodified _PVTIITGYL_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.789794921875 2 488.789318 975.564084 0.40112 0.00019607 0.26187 0.000128 0.66299 0.00032406 488.7894677884588 82.282 0.59226 76.106 75.812 76.405 -6.1757 82 32 3 0 0 0 0.023164 2 54022 53903;54022 60.39 9.5345 1 74535000 48273 4842 32607 33350 56235;56236 56236 0.075324127341446 PVTIITGYL 9 Unmodified _PVTIITGYL_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000495626.2_9:69245151-69262487:-|nuORF;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF;ENST00000377449.1_9:69261316-69262487:-|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.581298828125 1 976.57136 975.564084 0.17688 0.00017274 0.37765 0.0003688 0.55453 0.00054154 976.571507752189 82.272 0.52643 76.097 75.812 76.339 -6.1757 70 28 3 0 0 0 0.052168 1 53934 53934 44.407 8.3628 1 62339000 48274 4842 32607 33350 56237 56237 0.075324127341446 PVTIMTFNL 9 Unmodified _PVTIMTFNL_ 0 0 0 CON__Q6T181 CON__Q6T181 CON__Q6T181 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.8111572265625 2 518.280803 1034.54705 1.2377 0.00064145 3.4226 0.0017739 4.6603 0.0024153 518.2827366578168 101.18 0.15784 95.002 94.889 95.046 -6.1757 17 9 2 0 0 0 0.13712 1 67749 67749 30.225 0 1 57577000 + 48275 209 32608 33351 56238 56238 0.03116168856695367 PVTIVGVLQSI 11 Unmodified _PVTIVGVLQSI_ 0 0 0 REV__nc|ENSG00000100106|Q9H2D6-6|TRIOBP REV__nc|ENSG00000100106|Q9H2D6-6|TRIOBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3483276367188 2 563.347532 1124.68051 0.6806 0.00038341 1.0277 0.00057897 1.7083 0.00096238 563.3479618459218 71.499 0.21216 71.021 70.884 71.097 -0.47735 14 8 2 0 0 0 0.69155 1 39134 39134 6.2058 0.9089 1 638240 + 48276 29532 32609 33352 56239 56239 0.12315731234048144 PVTKNNLSL 9 Unmodified _PVTKNNLSL_ 0 0 0 REV__ENST00000367879.8_1_1:165877228-165877291:+|nuORF REV__ENST00000367879.8_1_1:165877228-165877291:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.5836486816406 2 493.287474 984.560395 0.37473 0.00018485 -1.5803 -0.00077952 -1.2055 -0.00059467 493.2871688843831 38.538 0.3073 34.169 34.012 34.319 -4.3689 28 19 2 0 0 0 0.1325 1 22679 22679 25.399 7.253 1 8498800 + 48277 25998 32610 33353 56240 56240 0.06749742960278127 PVTLDVLY 8 Unmodified _PVTLDVLY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;chr19:41720208-41729184|39|18.69|0.61|4.94|+|2|CEACAM5,CEACAM5|1 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2605895996094 2 460.260394 918.506234 0.56323 0.00025923 -0.19272 -8.87E-05 0.37052 0.00017053 460.2600119718208 76.413 0.27201 76.413 76.294 76.566 0 14 10 2 0 0 0 0.80232 1 42504 42504 5.2307 2.6532 1 261810 48278 2314 32611 33354 56241 56241 0.0437215080870601 PVTLEYPERAI 11 Unmodified _PVTLEYPERAI_ 0 0 0 REV__ENSG00000157110|ENST00000397323|RBPMS REV__ENSG00000157110|ENST00000397323|RBPMS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 429.5345458984375 3 429.902961 1286.68705 0.70396 0.00030263 -1.5289 -0.00065728 -0.82493 -0.00035464 430.23743686367794 41.223 0.27067 36.615 36.432 36.703 -4.6079 24 16 2 0 0 0 0.29468 1 24766 24766 7.9454 2.162 1 14971000 + 48279 21364 32612 33355 56242 56242 0.05517624394769882 PVTLGLDSTF 10 Unmodified _PVTLGLDSTF_ 0 0 0 ENST00000377791.3_1_6:26138939-26139047:+|nuORF ENST00000377791.3_1_6:26138939-26139047:+|nuORF ENST00000377791.3_1_6:26138939-26139047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2793579101562 2 525.279315 1048.54408 0.44306 0.00023273 -0.030735 -1.6144E-05 0.41233 0.00021659 525.2791561865353 69.725 0.42093 69.725 69.489 69.91 0 50 19 3 0 0 0 0.39779 1 38881 38881 21.747 0 1 10168000 48280 12529 32613 33356 56243 56243 0.021746170035157775 PVTLIYPKGP 10 Unmodified _PVTLIYPKGP_ 0 0 0 REV__nc|ENSG00000244731|P0C0L4-2|C4A REV__nc|ENSG00000244731|P0C0L4-2|C4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2173461914062 3 362.21822 1083.63283 NaN NaN NaN NaN NaN NaN NaN 14.557 1 14.565 14.065 15.065 0.0073986 0 0 0 0.99897 1 7221 7221 0.77653 0.50751 1 + 48281 24379 32614 33357 56244 56244 0.09436077033865331 PVTLNVLY 8 Unmodified _PVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;nc|ENSG00000124467|Q9UQ74-2|PSG8;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENST00000599753.1_2_19:43406566-43412082:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;ENSG00000124467|ENST00000306511|PSG8;ENSG00000221826|ENST00000327495|PSG3;nc|ENSG00000170848|Q00889|PSG6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7676696777344 2 459.768386 917.522219 0.93534 0.00043004 -1.0527 -0.00048398 -0.11732 -5.3941E-05 459.76779096763687 73.24 0.32668 73.24 73.052 73.379 0 30 16 2 0 0 0 0.17035 1 40746 40746 81.864 33.518 1 2051900 48282 1437;3789;10337 32615 33358 56245 56245 0.06015857045611028 PVTLNVLY 8 Unmodified _PVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;nc|ENSG00000124467|Q9UQ74-2|PSG8;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENST00000599753.1_2_19:43406566-43412082:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;ENSG00000124467|ENST00000306511|PSG8;ENSG00000221826|ENST00000327495|PSG3;nc|ENSG00000170848|Q00889|PSG6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MSMS AL20221201_MKP_PDAC_01 4 459.7688903808594 2 459.768386 917.522219 NaN NaN NaN NaN NaN NaN NaN 80.783 1 74.607 74.107 75.107 -6.1757 0 0 0 0.25888 1 53002 53002 70.716 23.795 1 48283 1437;3789;10337 32615 33358 56246 56246 0.06015857045611028 PVTLNVLY 8 Unmodified _PVTLNVLY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;chr19:41761527-41770802|91|23.48|0.5|5.56|+|2|CEACAM6,CEACAM6|1;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000231924|P11464-2|PSG1;nc|ENSG00000231924|P11464-4|PSG1;ENSG00000221878|ENST00000406070|PSG7;ENSG00000231924|ENST00000436291|PSG1;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000231924|P11464-3|PSG1;nc|ENSG00000124467|Q9UQ74-2|PSG8;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENST00000599753.1_2_19:43406566-43412082:-|nuORF;ENSG00000170848|ENST00000187910|PSG6;ENSG00000124467|ENST00000306511|PSG8;ENSG00000221826|ENST00000327495|PSG3;nc|ENSG00000170848|Q00889|PSG6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6;ENSG00000124469|ENST00000244336|CEACAM8;ENSG00000204941|ENST00000342951|PSG5 ENSG00000086548|ENST00000199764|CEACAM6 MSMS AL20221201_MKP_PDAC_01 4 459.7691345214844 2 459.768386 917.522219 NaN NaN NaN NaN NaN NaN NaN 81.01 1 74.834 74.334 75.334 -6.1757 0 0 0 0.22128 1 53155 53155 81.864 34.943 1 48284 1437;3789;10337 32615 33358 56247 56247 0.06015857045611028 PVTLPTPE 8 Unmodified _PVTLPTPE_ 0 0 0 ENST00000480230.5_1_2:241463300-241465350:-|nuORF ENST00000480230.5_1_2:241463300-241465350:-|nuORF ENST00000480230.5_1_2:241463300-241465350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4677124023438 1 853.466561 852.459284 0.045912 3.9184E-05 0.12805 0.00010929 0.17396 0.00014847 853.4665298199778 80.023 0.47746 80.023 79.797 80.275 0 62 24 3 0 0 0 0.72953 1 44556 44556 14.582 1.0738 1 9222800 48285 14054 32616 33359 56248 56248 0.02715291257561603 PVTMDKVHY 9 Unmodified _PVTMDKVHY_ 0 0 0 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2711791992188 2 545.273509 1088.53247 NaN NaN NaN NaN NaN NaN NaN 45.819 1 45.819 45.319 46.319 0 0 0 0 0.57317 1 25005 25005 13.508 0.97634 1 48286 529 32617 33360 56249 56249 -0.008259032914565978 PVTPEELLY 9 Unmodified _PVTPEELLY_ 0 0 0 nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-6|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8 nc|ENSG00000114098|Q8IUR7-3|ARMC8 nc|ENSG00000114098|Q8IUR7-3|ARMC8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.748291015625 2 530.78169 1059.54883 1.2524 0.00066473 3.5527 0.0018857 4.8051 0.0025505 530.7825838294241 54.271 0.13514 48.405 48.302 48.437 -5.8653 11 7 2 0 0 0 0.19298 1 34366 34366 8.5933 0 1 12527000 48287 3017 32618 33361 56250 56250 0.021435011462926923 PVTPTVEVKL 10 Unmodified _PVTPTVEVKL_ 0 0 0 REV__nc|ENSG00000155744|Q8IXS8|HYCC2 REV__nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.8245849609375 2 541.826432 1081.63831 -0.077081 -4.1764E-05 1.1301 0.00061231 1.053 0.00057054 541.8271015560241 65.588 0.26645 65.104 64.979 65.246 -0.48428 30 11 3 0 0 0 0.64183 1 35881 35881 14.838 6.0929 1 3683100 + 48288 21283 32619 33362 56251 56251 0.10075755825664601 PVTQTGLKML 10 Unmodified _PVTQTGLKML_ 0 0 0 REV__ENST00000511430.1_1_4:15780037-15826710:+|nuORF REV__ENST00000511430.1_1_4:15780037-15826710:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3112182617188 2 544.312635 1086.61072 -0.48895 -0.00026614 -1.4516 -0.00079011 -1.9405 -0.0010563 544.3120009133122 33.973 0.27366 33.782 33.643 33.917 -0.19131 22 10 3 0 0 0 0.65502 1 17725 17725 7.9102 0 1 4017400 + 48289 16945 32620 33363 56252 56252 0.07087529293767147 PVTRRPSF 8 Unmodified _PVTRRPSF_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5426025390625 1 959.542126 958.534849 0.44284 0.00042492 -1.5692 -0.0015057 -1.1263 -0.0010808 959.5409286976743 71.771 0.59221 71.294 70.907 71.499 -0.47609 44 23 3 0 0 0 0.77907 1 39372 39372 10.183 0 1 1856100 48290 6056 32621 33364 56253 56253 0.05392313228514922 PVTSLRHGFKT 11 Unmodified _PVTSLRHGFKT_ 0 0 0 REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF REV__ENST00000588919.5_1_19:1105440-1106636:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8265380859375 2 621.851304 1241.68806 2.3677 0.0014723 2.2569 0.0014035 4.6246 0.0028758 621.8530202814155 95.389 0.18909 95.393 95.241 95.43 0.004158 8 6 2 0 0 0 0.28226 1 52970 52970 17.113 2.2746 1 354710 + 48291 29131 32622 33365 56254 56254 0.07687883554331165 PVTSTIPAV 9 Unmodified _PVTSTIPAV_ 0 0 0 nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7171020507812 2 442.758018 883.501483 0.16868 7.4686E-05 -0.61323 -0.00027151 -0.44455 -0.00019683 442.75797195403743 41.085 0.14547 40.782 40.718 40.863 -0.30304 9 6 2 0 0 0 0.16229 1 21770 21770 24.674 0 1 1130500 48292 1244 32623 33366 56255 56255 0.055072666659384595 PVTSTIPAV 9 Unmodified _PVTSTIPAV_ 0 0 0 nc|ENSG00000078403|P55197-1|MLLT10;ENSG00000078403|ENST00000307729|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 nc|ENSG00000078403|P55197-1|MLLT10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.758018 883.501483 -0.092428 -4.0923E-05 -0.64881 -0.00028727 -0.74124 -0.00032819 442.7576521668391 40.7 0.15696 40.7 40.601 40.758 0 -0.041148 -1.2428E-05 NaN 24.674 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3651800 48293 1244 32623 33366 0.055072666659384595 PVTSTPAK 8 Unmodified _PVTSTPAK_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.7288513183594 2 400.729261 799.443968 -0.47237 -0.00018929 -0.8723 -0.00034956 -1.3447 -0.00053885 400.72928734371305 20.785 0.27348 20.785 20.562 20.835 0 32 19 2 0 0 0 0.71527 1 10414 10414 15.847 3.3156 1 721130 48294 6205 32624 33367 56256 56256 0.03622424460365892 PVTTSWHG 8 Unmodified _PVTTSWHG_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.7164916992188 2 442.716685 883.418816 NaN NaN NaN NaN NaN NaN NaN 40.778 1 40.778 40.278 41.278 0 0 0 0 0.95201 1 21943 21943 10.183 0.83596 1 + 48295 22772 32625 33368 56257 56257 -0.027556303421874873 PVTTSWHG 8 Unmodified _PVTTSWHG_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7171020507812 2 442.716685 883.418816 0.28578 0.00012652 -0.72666 -0.0003217 -0.44088 -0.00019519 442.71649760943063 40.982 0.46649 40.679 40.397 40.863 -0.30304 47 22 3 0 0 0 0.77907 1 21770 21770 10.183 4.423 1 9416200 + 48296 22772 32625 33368 56258 56258 -0.027556303421874873 PVTTTTFLI 9 Unmodified _PVTTTTFLI_ 0 0 0 REV__ENSG00000171561|ENST00000641541|OR2AT4 REV__ENSG00000171561|ENST00000641541|OR2AT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 992.5670166015625 1 992.566275 991.558998 0.51122 0.00050742 -0.19927 -0.00019779 0.31195 0.00030963 992.5652433055818 75.909 0.19883 75.957 75.864 76.063 0.047943 11 8 2 0 0 0 0.06187 1 41887 41887 42.095 2.1372 1 2371100 + 48297 22576 32626 33369 56259 56259 0.062881088715244 PVVAQSLSSL 10 Unmodified _PVVAQSLSSL_ 0 0 0 REV__ENSG00000136738|ENST00000377524|STAM REV__ENSG00000136738|ENST00000377524|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7882080078125 2 500.787307 999.560061 0.81029 0.00040578 -0.50968 -0.00025524 0.30062 0.00015055 500.787701368954 53.912 0.09211 53.912 53.876 53.968 0 6 3 2 0 0 0 0.48834 1 29931 29931 16.942 1.6938 1 635650 + 48298 20179 32627 33370 56260 56260 0.06026323240439524 PVVATGKMSL 10 Unmodified _PVVATGKMSL_ 0 0 0 REV__ENSG00000171940|ENST00000371471|ZNF217 REV__ENSG00000171940|ENST00000371471|ZNF217 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7846984863281 2 501.786253 1001.55795 NaN NaN NaN NaN NaN NaN NaN 83.174 1 82.676 82.176 83.176 -0.49751 0 0 0 0.92825 1 45531 45531 6.7232 0.51738 1 + 48299 22613 32628 33371 56261 56261 0.05723571230964808 PVVCQSRGPF 10 Unmodified _PVVCQSRGPF_ 0 0 0 REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant REV__FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.279296875 2 545.279126 1088.5437 NaN NaN NaN NaN NaN NaN NaN 45.712 1 45.684 45.184 46.184 -0.028011 0 0 0 0.79473 1 24568 24568 12.532 0.89125 1 + 48300 20571 32629 33372 56262 56262 0.0029691880267819215 PVVDPLEW 8 Unmodified _PVVDPLEW_ 0 0 0 REV__ENSG00000162843|ENST00000437684|WDR64 REV__ENSG00000162843|ENST00000437684|WDR64 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7525634765625 2 477.750193 953.485833 0.8927 0.00042649 2.4942 0.0011916 3.3869 0.0016181 477.75223014410335 72.928 0.21616 66.753 66.678 66.894 -6.1757 13 10 2 0 0 0 0.71616 1 47696 47696 15.768 1.1865 1 9170400 + 48301 21696 32630 33373 56263 56263 0.0072298014889611295 PVVDSLGWAWQ 11 Unmodified _PVVDSLGWAWQ_ 0 0 0 REV__ENST00000337959.8_1_22:43266270-43266411:-|nuORF REV__ENST00000337959.8_1_22:43266270-43266411:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.8799743652344 3 419.880267 1256.61897 0.39102 0.00016418 -0.28451 -0.00011946 0.10652 4.4725E-05 419.88019018016973 45.999 0.28108 45.971 45.826 46.107 -0.028011 24 12 3 0 0 0 0.67037 1 24744 24744 7.0371 1.9896 1 2386600 + 48302 25668 32631 33374 56264 56264 0.0009279953474106151 PVVEEFECNI 10 Unmodified _PVVEEFECNI_ 0 0 0 REV__nc|ENSG00000165181|Q5VXU9-2|SHOC1 REV__nc|ENSG00000165181|Q5VXU9-2|SHOC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.8672180175781 3 393.518118 1177.53253 1.0805 0.0004252 2.4396 0.00096003 3.5201 0.0013852 393.5191686591607 34.64 0.096043 30.545 30.503 30.599 -4.0951 6 5 2 0 0 0 0.23566 1 19998 19998 0.69767 0.24315 1 2748600 + 48303 29756 32632 33375 56265 56265 -0.04913948082094066 PVVEEKNF 8 Unmodified _PVVEEKNF_ 0 0 0 ENSG00000132004|ENST00000393261|FBXW9 ENSG00000132004|ENST00000393261|FBXW9 ENSG00000132004|ENST00000393261|FBXW9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2529296875 2 481.2531 960.491647 NaN NaN NaN NaN NaN NaN NaN 56.983 1 56.983 56.483 57.483 0 0 0 0 0.94749 1 31703 31703 11.114 0 1 48304 4366 32633 33376 56266 56266 0.00982078660570096 PVVEINTKQ 9 Unmodified _PVVEINTKQ_ 0 0 0 REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2947998046875 2 514.292756 1026.57096 0.34892 0.00017945 2.5738 0.0013237 2.9227 0.0015031 514.2944046026257 92.851 0.35773 92.393 92.257 92.615 -0.4574 30 19 2 0 0 0 0.32871 1 50814 50814 15.847 2.8047 1 2276400 + 48305 27152 32634 33377 56267 56267 0.058737256147196604 PVVEINTKQ 9 Unmodified _PVVEINTKQ_ 0 0 0 REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF REV__ENST00000446986.1_1_X:118601448-118602151:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.292756 1026.57096 0.34892 0.00017945 2.5738 0.0013237 2.9227 0.0015031 514.2944046026257 92.851 0.35773 92.393 92.257 92.615 -0.4574 0.014943 0.0001072 NaN 15.847 30 19 2 NaN NaN NaN NaN 0 NaN NaN 0 2276400 + 48306 27152 32634 33377 0.058737256147196604 PVVESLVYL 9 Unmodified _PVVESLVYL_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7950744628906 2 509.794601 1017.57465 0.33549 0.00017103 0.5066 0.00025826 0.84209 0.00042929 509.7947194110469 84.808 0.34128 84.808 84.589 84.93 0 37 16 3 0 0 0 0.30562 1 47029 47029 16.942 3.4344 1 1009900 48307 1657 32635 33378 56268 56268 0.06656395388586134 PVVGGPLPLNY 11 Unmodified _PVVGGPLPLNY_ 0 0 0 REV__ENST00000556263.1_1_14:55605083-55607082:+|nuORF REV__ENST00000556263.1_1_14:55605083-55607082:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8052978515625 2 563.318774 1124.623 0.70923 0.00039952 -0.54843 -0.00030894 0.1608 9.058E-05 563.3186101610258 44.957 0.35881 40.105 39.935 40.294 -4.852 61 23 3 0 0 0 0.6249 1 27431 27431 10.074 2.1638 1 38013000 + 48308 19824 32636 33379 56269 56269 0.06566889028476908 PVVHLLHS 8 Unmodified _PVVHLLHS_ 0 0 0 ENST00000486746.5_1_21:45509724-45511845:+|nuORF ENST00000486746.5_1_21:45509724-45511845:+|nuORF ENST00000486746.5_1_21:45509724-45511845:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2658386230469 2 451.266345 900.518136 NaN NaN NaN NaN NaN NaN NaN 70.807 1 70.807 70.307 71.307 0 0 0 0 0.97348 1 39449 39449 5.7604 0.52976 1 48309 14188 32637 33380 56270 56270 0.06389812342570167 PVVLCILISC 10 Unmodified _PVVLCILISC_ 0 0 0 ENST00000379731.4_1_9:33110684-33110912:-|nuORF ENST00000379731.4_1_9:33110684-33110912:-|nuORF ENST00000379731.4_1_9:33110684-33110912:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8695678710938 3 353.869546 1058.58681 NaN NaN NaN NaN NaN NaN NaN 20.231 1 20.242 19.742 20.742 0.010553 0 0 0 1.0061 1 10313 10313 0 0 1 48310 12577 32638 33381 56271 56271 0.05985972535768269 PVVLRKRRQ 9 Unmodified _PVVLRKRRQ_ 0 0 0 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 ENSG00000138246|ENST00000260818|DNAJC13 MSMS AL20221201_MKP_PDAC_01 4 576.37841796875 2 576.377823 1150.74109 NaN NaN NaN NaN NaN NaN NaN 102.5 1 96.327 95.827 96.827 -6.1757 0 0 0 0.84369 1 68784 68784 2.3027 0.4585 1 48311 5034 32639 33382 56272 56272 0.17175306127637668 PVVQSHASFTI 11 Unmodified _PVVQSHASFTI_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5-3|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MSMS AL20221201_MKP_PDAC_01 4 593.31689453125 2 593.316763 1184.61897 NaN NaN NaN NaN NaN NaN NaN 36.955 1 32.672 32.172 33.172 -4.2835 0 0 0 0.32157 1 21635 21635 32.037 0.76914 1 48312 1711 32640 33383 56273 56273 0.03404799534769154 PVVRGYHL 8 Unmodified _PVVRGYHL_ 0 0 0 REV__nc|ENSG00000185989|Q14644-2|RASA3 REV__nc|ENSG00000185989|Q14644-2|RASA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.5344848632812 1 940.536312 939.529036 0.25749 0.00024218 -2.3327 -0.002194 -2.0752 -0.0019518 940.5339344938592 68.808 0.7824 68.327 67.683 68.465 -0.48071 42 35 2 0 0 0 0.80143 1 37454 37454 5.7604 0.52976 1 2027000 + 48313 23544 32641 33384 56274 56274 0.0568521471685699 PVVRTLREI 9 Unmodified _PVVRTLREI_ 0 0 0 REV__ENST00000408939.3_1_2:178417583-178417721:-|nuORF REV__ENST00000408939.3_1_2:178417583-178417721:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5604858398438 3 361.560869 1081.66078 -0.45086 -0.00016301 0.34787 0.00012578 -0.10298 -3.7235E-05 361.56110016340506 19.858 0.11094 19.858 19.777 19.888 0 12 7 2 0 0 0 0.58466 1 9957 9957 1.1933 0 1 431310 + 48314 26674 32642 33385 56275 56275 0.12321400013956918 PVVSSSAPFY 10 Unmodified _PVVSSSAPFY_ 0 0 0 REV__ENSG00000109851|ENST00000524983|DBX1 REV__ENSG00000109851|ENST00000524983|DBX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.271484375 2 527.266207 1052.51786 1.1195 0.00059025 0.30113 0.00015878 1.4206 0.00074903 527.2662733385689 54.388 0.48877 54.388 54.152 54.641 0 54 21 3 0 0 0 0.52888 1 30110 30110 14.838 14.838 1 67868000 + 48315 18675 32643 33386 56276 56276 -0.006296521679587386 PVVTFLSSL 9 Unmodified _PVVTFLSSL_ 0 0 0 REV__ENSG00000184792|ENST00000332585|OSBP2 REV__ENSG00000184792|ENST00000332585|OSBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5592651367188 1 962.55571 961.548434 0.61575 0.0005927 0.9265 0.00089181 1.5422 0.0014845 962.5566385688094 74.229 0.22702 73.753 73.613 73.84 -0.47588 12 8 2 0 0 0 0.48152 1 40602 40602 8.5933 0.68312 1 604870 + 48316 23444 32644 33387 56277 56277 0.06612126217100922 PVVVSPASDY 10 Unmodified _PVVVSPASDY_ 0 0 0 ENSG00000091640|ENST00000206020|SPAG7 ENSG00000091640|ENST00000206020|SPAG7 ENSG00000091640|ENST00000206020|SPAG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2644653320312 2 517.263665 1032.51278 0.39209 0.00020282 -0.042171 -2.1814E-05 0.34992 0.000181 517.2637686519312 48.068 0.27743 48.068 47.916 48.193 0 24 13 2 0 0 0 0.2178 1 26399 26399 32.305 8.2849 1 7879300 48317 1593 32645 33388 56278 56278 -0.00217956030564892 PVWAAKAP 8 Unmodified _PVWAAKAP_ 0 0 0 REV__nc|ENSG00000103066|Q8NCC3-2|PLA2G15 REV__nc|ENSG00000103066|Q8NCC3-2|PLA2G15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.4751586914062 1 839.4774 838.470124 -0.3398 -0.00028525 -1.8153 -0.0015239 -2.1551 -0.0018091 839.4752223038922 24.661 0.077965 24.66 24.61 24.688 -0.0016766 4 2 2 0 0 0 0.80975 1 12620 12620 0.79363 0 1 1881000 + 48318 29543 32646 33389 56279 56279 0.04442738422505954 PVWHCLWF 8 Unmodified _PVWHCLWF_ 0 0 0 REV__ENST00000570439.1_1_17:7250283-7250895:+|nuORF REV__ENST00000570439.1_1_17:7250283-7250895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.260986328125 2 544.262748 1086.51094 0.2087 0.00011359 -3.706 -0.0020171 -3.4973 -0.0019035 544.2611433515581 80.868 0.32837 80.868 80.717 81.046 0 29 15 3 0 0 0 0.80044 1 44857 44857 6.3541 1.1234 1 775020 + 48319 28970 32647 33390 56280 56280 -0.02885243529544823 PVWNRRHS 8 Unmodified _PVWNRRHS_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MSMS AL20221201_MKP_PDAC_01 4 351.1902465820312 3 351.189658 1050.54715 NaN NaN NaN NaN NaN NaN NaN 14.446 1 11.943 11.443 12.443 -2.5029 0 0 0 0.97444 1 7337 7337 0.45834 0 1 48320 577 32648 33391 56281 56281 0.023893496915434298 PVWPEEGQEL 10 Unmodified _PVWPEEGQEL_ 0 0 0 REV__ENSG00000205903|ENST00000382252|ZNF316 REV__ENSG00000205903|ENST00000382252|ZNF316 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2823486328125 2 592.285128 1182.5557 -0.28055 -0.00016617 -0.098215 -5.8171E-05 -0.37876 -0.00022434 592.2850894220381 52.081 0.42439 52.081 51.908 52.332 0 58 18 4 0 0 0 0.35903 2 28753 28753;28861 24.021 6.9077 1 52988000 + 48321 24245 32649 33392 56282;56283 56282 -0.028271859731376026 PVWQWIGKQWQ 11 Unmodified _PVWQWIGKQWQ_ 0 0 0 REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF REV__ENST00000416702.1_1_10:21318746-21318953:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 728.3826293945312 2 728.380229 1454.7459 NaN NaN NaN NaN NaN NaN NaN 95.299 1 95.303 94.803 95.803 0.004158 0 0 0 0.94165 1 52948 52948 1.3295 0.13619 1 + 48322 26778 32650 33393 56284 56284 0.03672145479754363 PVWRSSVF 8 Unmodified _PVWRSSVF_ 0 0 0 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.263427734375 2 489.263802 976.513051 -0.096519 -4.7223E-05 0.14783 7.2326E-05 0.051307 2.5103E-05 489.26386818726 56.216 0.36221 56.147 55.942 56.304 -0.068737 41 18 3 0 0 0 0.64853 1 30605 30605 21.747 5.8995 1 17638000 + 48323 20815 32651 33394 56285 56285 0.023855084799492943 PVWRSSVF 8 Unmodified _PVWRSSVF_ 0 0 0 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 REV__nc|ENSG00000146151|Q8TB92-5|HMGCLL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.3045959472656 2 489.263802 976.513051 -0.096519 -4.7223E-05 0.14783 7.2326E-05 0.051307 2.5103E-05 489.26386818726 56.216 0.36221 56.147 55.942 56.304 -0.068737 41 18 3 0 0 0 8.7369 1 30627 30627 15.847 15.847 1 17638000 + 48324 20815 32651 33394 56286 56286 0.023855084799492943 PVWYAIATY 9 Unmodified _PVWYAIATY_ 0 0 0 REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2793579101562 2 542.279118 1082.54368 0.46404 0.00025164 -2.183 -0.0011838 -1.719 -0.00093218 542.2781314355783 52.164 0.31423 52.105 51.896 52.21 -0.058918 26 14 2 0 0 0 0.37804 1 28199 28199 13.508 1.8676 1 2111400 + 48325 24151 32652 33395 56287 56287 0.005712420743293478 PVYDGGAP 8 Unmodified _PVYDGGAP_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 775.3614501953125 1 775.362096 774.354819 -0.31791 -0.00024649 0.72312 0.00056068 0.40522 0.00031419 775.362966026259 56.301 0.49334 56.301 56.093 56.586 0 34 22 2 0 0 0 0.24182 1 31301 31301 63.394 29.206 1 2955200 48326 6400 32653 33396 56288 56288 -0.0413841049913799 PVYETRWT 8 Unmodified _PVYETRWT_ 0 0 0 REV__ENSG00000121741|ENST00000610343|ZMYM2 REV__ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2660522460938 2 526.263999 1050.51345 0.019717 1.0376E-05 0.90919 0.00047848 0.92891 0.00048885 526.2645761395156 22.287 0.53071 22.287 22.143 22.674 0 35 14 3 0 0 0 0.80143 1 11388 11388 5.7604 0.52976 1 4577600 + 48327 19305 32654 33397 56289 56289 -0.0097911659086094 PVYFCCYDYF 10 Unmodified _PVYFCCYDYF_ 0 0 0 ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.506591796875 3 440.508566 1318.50387 0.32743 0.00014423 -2.6926 -0.0011861 -2.3652 -0.0010419 440.5074914565553 66.038 0.25507 66.038 65.88 66.135 0 27 12 3 0 0 0 0.7191 1 36814 36814 0.77653 0.27058 1 968200 48328 9865 32655 33398 56290 56290 -0.14264388982928722 PVYFHLIP 8 Unmodified _PVYFHLIP_ 0 0 0 ENST00000264025.7_1_11:119534550-119534718:-|nuORF ENST00000264025.7_1_11:119534550-119534718:-|nuORF ENST00000264025.7_1_11:119534550-119534718:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 986.5515747070312 1 985.550565 984.543289 0.13479 0.00013284 0.44498 0.00043855 0.57977 0.00057139 985.5524351175529 31.218 0.096893 31.248 31.199 31.296 0.030104 5 3 2 0 0 0 0.80975 1 16370 16370 0.79363 0 1 1851800 48329 11302 32656 33399 56291 56291 0.050398671451375776 PVYGLPMG 8 Unmodified _PVYGLPMG_ 0 0 0 REV__ENSG00000179954|ENST00000389623|SSC5D REV__ENSG00000179954|ENST00000389623|SSC5D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2134399414062 2 417.214932 832.415311 NaN NaN NaN NaN NaN NaN NaN 5.3585 1 5.3596 4.8596 5.8596 0.0010915 0 0 0 0.97444 1 2700 2700 0.79363 0.10326 1 + 48330 23130 32657 33400 56292 56292 -0.007600164404038878 PVYLLEKKA 9 Unmodified _PVYLLEKKA_ 0 0 0 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2179870605469 3 354.21822 1059.63283 0.7468 0.00026453 0.12737 4.5118E-05 0.87417 0.00030965 354.21813103617245 47.327 0.39478 47.288 47.082 47.477 -0.038647 40 18 3 0 0 0 0.53666 1 25565 25565 2.9952 0.90923 1 5019300 + 48331 29734 32658 33401 56293 56293 0.10540077033851958 PVYLMGPYL 9 Unmodified _PVYLMGPYL_ 0 0 0 REV__nc|ENSG00000178522|Q9NP70-2|AMBN REV__nc|ENSG00000178522|Q9NP70-2|AMBN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.779296875 2 526.777896 1051.54124 NaN NaN NaN NaN NaN NaN NaN 80.441 1 80.441 79.941 80.941 0 0 0 0 0.84369 1 44666 44666 2.3027 0 1 + 48332 23047 32659 33402 56294 56294 0.0175307034501202 PVYLPDSSY 9 Unmodified _PVYLPDSSY_ 0 0 0 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 REV__nc|ENSG00000275835|Q96RT8-2|TUBGCP5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7872314453125 2 520.75039 1039.48623 0.38656 0.0002013 0.70678 0.00036805 1.0933 0.00056936 520.7509590881656 82.824 0.37395 82.824 82.61 82.984 0 30 16 3 0 0 0 0.20528 1 45907 45907 8.5933 2.2392 1 900780 + 48333 24654 32660 33403 56295 56295 -0.03193644921907435 PVYNISHLRLQ 11 Unmodified _PVYNISHLRLQ_ 0 0 0 REV__ENSG00000155890|ENST00000286349|TRIM42 REV__ENSG00000155890|ENST00000286349|TRIM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.878173828125 2 670.377686 1338.74082 -0.36254 -0.00024304 -0.81131 -0.00054389 -1.1738 -0.00078692 670.3776256252861 70.893 0.22467 70.893 70.841 71.065 0 26 15 3 0 0 0 0.66428 2 39500 39500;39528 7.609 2.3121 1 1457500 + 48334 21297 32661 33404 56296;56297 56296 0.08499841617140191 PVYNISHLRLQ 11 Unmodified _PVYNISHLRLQ_ 0 0 0 REV__ENSG00000155890|ENST00000286349|TRIM42 REV__ENSG00000155890|ENST00000286349|TRIM42 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.878173828125 2 670.377686 1338.74082 -0.36254 -0.00024304 -0.81131 -0.00054389 -1.1738 -0.00078692 670.3776256252861 70.893 0.22467 70.893 70.841 71.065 0 26 15 3 0 0 0 0.29923 1 39500 39500 7.609 2.3121 1 1457500 + 48335 21297 32661 33404 56298 56298 0.08499841617140191 PVYNISHLRLQ 11 Unmodified _PVYNISHLRLQ_ 0 0 0 REV__ENSG00000155890|ENST00000286349|TRIM42 REV__ENSG00000155890|ENST00000286349|TRIM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8795776367188 2 670.377686 1338.74082 0.49524 0.000332 -1.0027 -0.00067218 -0.50744 -0.00034018 670.377036416866 71.433 0.30486 70.956 70.767 71.072 -0.47735 29 12 3 0 0 0 0.66428 1 39071 39071 7.609 2.3121 1 1412800 + 48336 21297 32661 33404 56299 56299 0.08499841617140191 PVYNISHLRLQ 11 Unmodified _PVYNISHLRLQ_ 0 0 0 REV__ENSG00000155890|ENST00000286349|TRIM42 REV__ENSG00000155890|ENST00000286349|TRIM42 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 670.377686 1338.74082 0.49524 0.000332 -1.0027 -0.00067218 -0.50744 -0.00034018 670.377036416866 71.433 0.30486 70.956 70.767 71.072 -0.47735 0.031037 -8.6994E-05 NaN 7.609 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1412800 + 48337 21297 32661 33404 0.08499841617140191 PVYNKLTD 8 Unmodified _PVYNKLTD_ 0 0 0 REV__nc|ENSG00000147862|O00712-6|NFIB REV__nc|ENSG00000147862|O00712-6|NFIB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7803955078125 2 475.2531 948.491647 0.49924 0.00023727 -1.0431 -0.00049574 -0.54388 -0.00025848 475.2528254480689 63.702 0.21438 63.216 63.104 63.318 -0.48617 12 9 2 0 0 0 8.7369 1 34693 34693 0.79363 0 1 999990 + 48338 20917 32662 33405 56300 56300 0.015340786605520407 PVYPATKQYF 10 Unmodified _PVYPATKQYF_ 0 0 0 REV__ENSG00000171209|ENST00000304954|CSN3 REV__ENSG00000171209|ENST00000304954|CSN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2137756347656 3 405.213246 1212.61791 0.10076 4.0829E-05 -0.044067 -1.7857E-05 0.056691 2.2972E-05 405.21331870988365 46.743 0.23198 46.743 46.607 46.839 0 20 10 3 0 0 0 0.69064 1 25573 25573 1.9064 0 1 1773800 + 48339 22542 32663 33406 56301 56301 0.02010585165817247 PVYPDDSPDYD 11 Unmodified _PVYPDDSPDYD_ 0 0 0 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 REV__nc|ENSG00000072415|Q8N3R9-2|PALS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.1749877929688 3 428.175186 1281.50373 0.30624 0.00013113 -0.81585 -0.00034933 -0.5096 -0.0002182 428.17480554561627 59.581 0.41644 59.09 58.876 59.293 -0.49079 64 19 5 0 0 0 0.73992 1 32480 32480 0.50596 0.051438 1 5643200 + 48340 17516 32664 33407 56302 56302 -0.12576394177585826 PVYRWSEPSGL 11 Unmodified _PVYRWSEPSGL_ 0 0 0 REV__ENST00000491862.5_1_3:153748128-153838919:-|nuORF REV__ENST00000491862.5_1_3:153748128-153838919:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8885498046875 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 41.482 1 36.874 36.374 37.374 -4.6079 0 0 0 0.92234 1 24916 24916 2.8433 0.93691 1 + 48341 27651 32665 33408 56303 56303 0.0072018456346540916 PVYTHHPWAGC 11 Unmodified _PVYTHHPWAGC_ 0 0 0 ENST00000510241.5_2_5:139943677-139944139:-|nuORF ENST00000510241.5_2_5:139943677-139944139:-|nuORF ENST00000510241.5_2_5:139943677-139944139:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.1951904296875 3 423.19408 1266.56041 -0.28964 -0.00012257 1.1684 0.00049446 0.87877 0.00037189 423.19479648709523 48.343 0.33807 48.343 48.193 48.531 0 53 16 4 0 0 0 0.72952 1 26606 26606 0.50596 0 1 30439000 48342 14583 32666 33409 56304 56304 -0.06220580311355661 PVYVDAASF 9 Unmodified _PVYVDAASF_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.739990234375 2 484.739825 967.465098 0.83876 0.00040658 0.27932 0.0001354 1.1181 0.00054198 484.7398472920575 74.658 0.32965 74.182 74.02 74.349 -0.47588 19 13 2 0 0 0 0.48152 1 40891 40891 8.5933 0.68312 1 327860 + 48343 20471 32667 33410 56305 56305 -0.019936102307724468 PVYVDAASF 9 Unmodified _PVYVDAASF_ 0 0 0 REV__ENSG00000140443|ENST00000650285|IGF1R REV__ENSG00000140443|ENST00000650285|IGF1R MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.739825 967.465098 0.83876 0.00040658 0.27932 0.0001354 1.1181 0.00054198 484.7398472920575 74.658 0.32965 74.182 74.02 74.349 -0.47588 0 0 NaN 8.5933 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 327860 + 48344 20471 32667 33410 -0.019936102307724468 PVYVPDPT 8 Unmodified _PVYVPDPT_ 0 0 0 ENST00000470092.1_1_20:30640227-30659618:+|nuORF;nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK ENST00000470092.1_1_20:30640227-30659618:+|nuORF ENST00000470092.1_1_20:30640227-30659618:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4501953125 1 887.450911 886.443634 0.071299 6.3275E-05 0.50411 0.00044737 0.57541 0.00051064 887.4512202416797 76.305 0.16944 76.305 76.226 76.396 0 8 6 2 0 0 0 0.80044 1 42445 42445 6.3541 0 1 339840 48345 1947 32668 33411 56306 56306 -0.004129952594894348 PVYWNQAD 8 Unmodified _PVYWNQAD_ 0 0 0 nc|ENSG00000100523|Q8NEL9-2|DDHD1;nc|ENSG00000100523|Q8NEL9-4|DDHD1;ENSG00000100523|ENST00000673822|DDHD1;ENST00000557445.1_1_14:53570389-53619075:-|nuORF nc|ENSG00000100523|Q8NEL9-2|DDHD1 nc|ENSG00000100523|Q8NEL9-2|DDHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7267456054688 2 496.727249 991.439946 NaN NaN NaN NaN NaN NaN NaN 68.544 1 68.064 67.564 68.564 -0.48071 0 0 0 0.97444 1 37463 37463 2.5775 0.27475 1 48346 1840 32669 33412 56307 56307 -0.0561166503334789 PVYYILYI 8 Unmodified _PVYYILYI_ 0 0 0 nc|ENSG00000145743|Q9UF56-2|FBXL17 nc|ENSG00000145743|Q9UF56-2|FBXL17 nc|ENSG00000145743|Q9UF56-2|FBXL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2957763671875 2 522.294236 1042.57392 0.3111 0.00016249 -0.025216 -1.317E-05 0.28588 0.00014932 522.2943374632555 93.692 0.31041 93.235 93.001 93.311 -0.45741 19 13 2 0 0 0 0.80624 1 51132 51132 2.8892 0 1 397890 48347 16252 32670 33413 56308 56308 0.054336007395022534 PWCRGPAGR 9 Unmodified _PWCRGPAGR_ 0 0 0 ENST00000530607.1_1_1:26872355-26877988:+|nuORF ENST00000530607.1_1_1:26872355-26877988:+|nuORF ENST00000530607.1_1_1:26872355-26877988:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.7772827148438 2 500.250703 998.486853 0.98227 0.00049138 0.77671 0.00038855 1.759 0.00087993 500.25058230655395 91.385 0.29462 85.209 85.076 85.371 -6.1757 31 15 3 0 0 0 0.19613 1 60433 60433 12.532 1.4171 1 4671900 48348 14894 32671 33414 56309 56309 -0.012450839631810595 PWEVPKKLKY 10 Unmodified _PWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.9203491210938 3 429.920174 1286.73869 0.36242 0.00015581 0.042246 1.8162E-05 0.40466 0.00017397 429.92019753448454 53.072 0.28965 53.008 52.826 53.115 -0.063423 31 14 3 0 0 0 0.077785 1 28762 28762 59.052 53.65 1 5946600 48349 7813 32672 33415 56310 56310 0.10679412879312622 PWEVPKKLKY 10 Unmodified _PWEVPKKLKY_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;ENST00000477975.2_1_3:112415757-112416508:-|nuORF ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MSMS AL20221201_MKP_PDAC_01 4 429.9209289550781 3 429.920174 1286.73869 NaN NaN NaN NaN NaN NaN NaN 85.215 1 79.039 78.539 79.539 -6.1757 0 0 0 0.59691 1 56109 56109 18.721 12.098 1 48350 7813 32672 33415 56311 56311 0.10679412879312622 PWFAGNKITF 10 Unmodified _PWFAGNKITF_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1 ENSG00000134184|ENST00000309851|GSTM1 ENSG00000134184|ENST00000309851|GSTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8124389648438 2 590.811116 1179.60768 0.013906 8.2158E-06 2.1881 0.0012927 2.202 0.001301 590.8117541268235 72.517 0.40459 72.558 72.399 72.803 0.041725 35 18 2 0 0 0 0.061642 1 39913 39913 72.968 42.743 1 11594000 48351 4565 32673 33416 56312 56312 0.02506022231273164 PWFAGNKITF 10 Unmodified _PWFAGNKITF_ 0 0 0 ENSG00000134184|ENST00000309851|GSTM1 ENSG00000134184|ENST00000309851|GSTM1 ENSG00000134184|ENST00000309851|GSTM1 MSMS AL20221201_MKP_PDAC_01 4 590.809326171875 2 590.811116 1179.60768 NaN NaN NaN NaN NaN NaN NaN 87.717 1 81.541 81.041 82.041 -6.1757 0 0 0 0.013844 1 57849 57849 86.332 61.341 1 48352 4565 32673 33416 56313 56313 0.02506022231273164 PWFKIIAATF 10 Unmodified _PWFKIIAATF_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3406372070312 2 597.33951 1192.66447 1.2219 0.00072987 -3.3042 -0.0019737 -2.0823 -0.0012439 597.3374619059397 92.107 0.47543 92.137 91.966 92.441 0.030197 33 17 2 0 0 0 0.061642 1 51211 51211 72.968 56.819 1 5538500 48353 947 32674 33417 56314 56314 0.0758406978777657 PWFKIIAATF 10 Unmodified _PWFKIIAATF_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1 ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3405151367188 2 597.33951 1192.66447 0.69363 0.00041433 1.6755 0.0010009 2.3692 0.0014152 597.3398277243135 100.32 0.14322 94.145 94.058 94.202 -6.1757 11 8 2 0 0 0 0.040614 1 67039 67039 82.529 59.793 1 69110000 48354 947 32674 33417 56315 56315 0.0758406978777657 PWFMITVTLLE 11 Unmodified _PWFMITVTLLE_ 0 0 0 nc|ENSG00000141314|P58872-2|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;ENSG00000141314|ENST00000269051|RHBDL3 nc|ENSG00000141314|P58872-2|RHBDL3 nc|ENSG00000141314|P58872-2|RHBDL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.3626098632812 2 675.362324 1348.7101 NaN NaN NaN NaN NaN NaN NaN 85.899 1 85.899 85.399 86.399 0 0 0 0 0.94301 1 47591 47591 0.35063 0 1 48355 5313 32675 33418 56316 56316 0.0496892718788331 PWFQNSSVILF 11 Unmodified _PWFQNSSVILF_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3492431640625 2 669.348063 1336.68157 0.97022 0.00064942 -0.50325 -0.00033685 0.46697 0.00031257 669.8493615234619 101.12 0.10159 94.948 94.889 94.99 -6.1757 13 5 3 0 0 0 0.0029835 1 67793 67793 78.728 66.487 1 68926000 48356 1481 32676 33419 56317 56317 0.026699456029518842 PWFREFWEQRF 11 Unmodified _PWFREFWEQRF_ 0 0 0 ENSG00000164082|ENST00000395052|GRM2 ENSG00000164082|ENST00000395052|GRM2 ENSG00000164082|ENST00000395052|GRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2341003417969 4 407.700572 1626.77318 -0.015608 -6.3634E-06 -0.32215 -0.00013134 -0.33776 -0.0001377 407.700379794824 25.755 0.18399 22.803 22.696 22.88 -2.9511 14 10 2 0 0 0 0.74157 1 14080 14080 0.094841 0 1 7929400 48357 7135 32677 33420 56318 56318 -0.015133709798647033 PWFTAAEREAL 11 Unmodified _PWFTAAEREAL_ 0 0 0 ENST00000419531.2_1_1:59361993-59364954:+|nuORF ENST00000419531.2_1_1:59361993-59364954:+|nuORF ENST00000419531.2_1_1:59361993-59364954:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8891296386719 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 49.806 1 49.758 49.258 50.258 -0.048824 0 0 0 0.92234 1 26925 26925 5.0475 2.9615 1 48358 13091 32678 33421 56319 56319 0.007201845634881465 PWFVGDKITF 10 Unmodified _PWFVGDKITF_ 0 0 0 nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENST00000493395.1_1_1:110201441-110203811:+|nuORF;ENST00000493171.5_1_1:110201318-110203873:+|nuORF nc|ENSG00000168765|Q03013-3|GSTM4 nc|ENSG00000168765|Q03013-3|GSTM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3169555664062 2 605.318774 1208.623 1.2861 0.0007785 -4.2164 -0.0025523 -2.9303 -0.0017738 605.3159105453309 82.377 0.2086 82.439 82.347 82.556 0.062004 14 7 2 0 0 0 0.23548 1 45626 45626 31.268 13.122 1 3447000 48359 7796 32679 33422 56320 56320 0.02702889028455502 PWFVGDKITF 10 Unmodified _PWFVGDKITF_ 0 0 0 nc|ENSG00000168765|Q03013-3|GSTM4;nc|ENSG00000168765|Q03013-2|GSTM4;ENSG00000168765|ENST00000369836|GSTM4;ENST00000493395.1_1_1:110201441-110203811:+|nuORF;ENST00000493171.5_1_1:110201318-110203873:+|nuORF nc|ENSG00000168765|Q03013-3|GSTM4 nc|ENSG00000168765|Q03013-3|GSTM4 MSMS AL20221201_MKP_PDAC_01 4 605.3201293945312 2 605.318774 1208.623 NaN NaN NaN NaN NaN NaN NaN 97.301 1 91.126 90.626 91.626 -6.1757 0 0 0 0.024108 1 64483 64483 84.522 61.786 1 48360 7796 32679 33422 56321 56321 0.02702889028455502 PWGCWRMG 8 Unmodified _PWGCWRMG_ 0 0 0 REV__ENST00000607097.1_1_8:94928640-94928784:-|nuORF REV__ENST00000607097.1_1_8:94928640-94928784:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7149963378906 2 496.715107 991.415662 NaN NaN NaN NaN NaN NaN NaN 5.33 1 5.2526 4.7526 5.7526 -0.07749 0 0 0 0.97444 1 2633 2633 0 0 1 + 48361 29306 32680 33423 56322 56322 -0.08038919992213778 PWGIKQAGF 9 Unmodified _PWGIKQAGF_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9;ENST00000507447.1_1_5:54960464-54965471:-|nuORF nc|ENSG00000177058|Q8NBW4-4|SLC38A9;ENST00000507447.1_1_5:54960464-54965471:-|nuORF nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2717590332031 2 502.271627 1002.5287 NaN NaN NaN NaN NaN NaN NaN 53.834 1 53.767 53.267 54.267 -0.066936 0 0 0 0.043758 1 29220 29220 60.39 31.903 1 48362 8653;14539 32681 33424 56323 56323 0.027537949969882902 PWHQLIAY 8 Unmodified _PWHQLIAY_ 0 0 0 REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.271240234375 2 514.271627 1026.5287 -0.18456 -9.4916E-05 -3.0671 -0.0015773 -3.2517 -0.0016722 514.2700224883496 22.704 0.16391 22.704 22.59 22.754 0 11 7 2 0 0 0 0.74163 1 11546 11546 13.508 0.97634 1 1037600 + 48363 26180 32682 33425 56324 56324 0.01649794996978926 PWHQLIAY 8 Unmodified _PWHQLIAY_ 0 0 0 REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF REV__ENST00000374476.3_1_2:177669824-177670178:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.271627 1026.5287 -0.18456 -9.4916E-05 -3.0671 -0.0015773 -3.2517 -0.0016722 514.2700224883496 22.704 0.16391 22.704 22.59 22.754 0 0 0 NaN 13.508 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1037600 + 48364 26180 32682 33425 0.01649794996978926 PWHTHLPEY 9 Unmodified _PWHTHLPEY_ 0 0 0 REV__ENSG00000182749|ENST00000675840|PAQR7 REV__ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2835693359375 2 590.282723 1178.55089 0.50935 0.00030066 2.415 0.0014255 2.9243 0.0017262 590.2841019837437 83.778 0.48158 83.279 82.96 83.441 -0.49961 44 19 3 0 0 0 0.5029 1 45832 45832 7.2892 0.56607 1 913760 + 48365 23292 32683 33426 56325 56325 -0.031240253252462935 PWKHIDYF 8 Unmodified _PWKHIDYF_ 0 0 0 ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D ENSG00000176658|ENST00000318217|MYO1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.27783203125 2 553.276909 1104.53927 0.6387 0.00035338 -0.56421 -0.00031217 0.07449 4.1213E-05 553.2769214154453 56.818 0.23752 56.749 56.619 56.857 -0.068737 26 11 3 0 0 0 0.1875 1 30900 30900 74.929 44.292 1 4351500 48366 8612 32684 33427 56326 56326 -0.008822223485822178 PWKKLLPCS 9 Unmodified _PWKKLLPCS_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5391540527344 3 357.872167 1070.59467 0.31595 0.00011307 2.4128 0.00086347 2.7287 0.00097654 357.87323980561786 48.168 0.25658 48.13 47.988 48.244 -0.038647 26 12 3 0 0 0 0.20727 1 25978 25978 4.897 1.9018 1 2287800 48367 3750 32685 33428 56327 56327 0.0621986784751698 PWKRGAGG 8 Unmodified _PWKRGAGG_ 0 0 0 ENST00000526405.5_1_11:124956598-124956961:+|nuORF ENST00000526405.5_1_11:124956598-124956961:+|nuORF ENST00000526405.5_1_11:124956598-124956961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.7286376953125 2 414.727387 827.44022 0.71923 0.00029828 1.8493 0.00076694 2.5685 0.0010652 414.7280960960207 65.817 0.28286 65.827 65.69 65.973 0.0095596 22 13 2 0 0 0 0.80992 1 36126 36126 0.69038 0 1 2795500 48368 14816 32686 33429 56328 56328 0.019597994771856975 PWKVIFVFAL 10 Unmodified _PWKVIFVFAL_ 0 0 0 ENSG00000205667|ENST00000381130|ARSH ENSG00000205667|ENST00000381130|ARSH ENSG00000205667|ENST00000381130|ARSH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.882568359375 3 407.24611 1218.7165 1.108 0.00045124 1.2694 0.00051697 2.3774 0.0009682 407.2464541286448 85.917 0.44673 79.741 79.53 79.977 -6.1757 45 24 2 0 0 0 0.23767 1 56516 56516 6.1918 0 1 19628000 48369 10375 32687 33430 56329 56329 0.1158923320156191 PWLFDAPKF 9 Unmodified _PWLFDAPKF_ 0 0 0 nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF nc|ENSG00000149761|Q9BRQ3-3|NUDT22 nc|ENSG00000149761|Q9BRQ3-3|NUDT22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.794677734375 2 560.794935 1119.57532 0.24791 0.00013903 0.093129 5.2226E-05 0.34104 0.00019125 560.7949219189022 84.515 0.2374 84.578 84.484 84.721 0.063171 16 10 2 0 0 0 0.0082353 1 46763 46763 96.111 71.437 1 27028000 48370 6034 32688 33431 56330 56330 0.0203123482826868 PWLFDAPKF 9 Unmodified _PWLFDAPKF_ 0 0 0 nc|ENSG00000149761|Q9BRQ3-3|NUDT22;ENSG00000149761|ENST00000279206|NUDT22;nc|ENSG00000149761|Q9BRQ3-2|NUDT22;ENST00000537707.1_1_11:63993896-63994784:+|nuORF;ENST00000422364.2_1_11:63994043-63994784:+|nuORF nc|ENSG00000149761|Q9BRQ3-3|NUDT22 nc|ENSG00000149761|Q9BRQ3-3|NUDT22 MSMS AL20221201_MKP_PDAC_01 4 560.7959594726562 2 560.794935 1119.57532 NaN NaN NaN NaN NaN NaN NaN 98.244 1 92.069 91.569 92.569 -6.1757 0 0 0 0.014715 1 65145 65145 85.642 55.005 1 48371 6034 32688 33431 56331 56331 0.0203123482826868 PWLLDPKILKF 11 Unmodified _PWLLDPKILKF_ 0 0 0 ENSG00000173530|ENST00000312584|TNFRSF10D ENSG00000173530|ENST00000312584|TNFRSF10D ENSG00000173530|ENST00000312584|TNFRSF10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2799377441406 3 457.279591 1368.81694 1.4319 0.00065477 -1.284 -0.00058716 0.14785 6.761E-05 457.2793098391633 91.76 0.30258 91.796 91.669 91.971 0.035294 24 10 3 0 0 0 0.18957 1 51060 51060 32.616 26.748 1 4529700 48372 8333 32689 33432 56332 56332 0.147288454645377 PWLLDPKILKF 11 Unmodified _PWLLDPKILKF_ 0 0 0 ENSG00000173530|ENST00000312584|TNFRSF10D ENSG00000173530|ENST00000312584|TNFRSF10D ENSG00000173530|ENST00000312584|TNFRSF10D MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.27978515625 3 457.279591 1368.81694 0.46197 0.00021125 0.78227 0.00035771 1.2442 0.00056896 457.27976884658335 99.696 0.12592 93.521 93.448 93.574 -6.1757 23 7 4 0 0 0 0.063019 1 66456 66456 48.073 43.357 1 93284000 48373 8333 32689 33432 56333 56333 0.147288454645377 PWLSNESI 8 Unmodified _PWLSNESI_ 0 0 0 nc|ENSG00000130768|Q92485-2|SMPDL3B;ENSG00000130768|ENST00000373894|SMPDL3B;ENST00000548116.5_1_1:28271947-28285346:+|nuORF nc|ENSG00000130768|Q92485-2|SMPDL3B nc|ENSG00000130768|Q92485-2|SMPDL3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2374877929688 2 473.23745 944.460347 0.82236 0.00038917 -0.082945 -3.9253E-05 0.73942 0.00034992 473.23740699805035 72.909 0.94871 66.734 66.259 67.207 -6.1757 100 47 3 0 0 0 0.3408 2 47443 47443;47915 50.855 0 1 51946000 48374 4257 32690 33433 56334;56335 56334 -0.014104943735219422 PWPEQHVPVLF 11 Unmodified _PWPEQHVPVLF_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 674.856201171875 2 674.856055 1347.69756 1.1834 0.00079859 0.15944 0.0001076 1.3428 0.00090619 674.8561842299002 96.404 0.30272 90.228 90.084 90.387 -6.1757 27 17 2 0 0 0 0.14513 1 63858 63858 38.615 27.12 1 14186000 48375 9912 32691 33434 56336 56336 0.037616518398408516 PWPPGWRAL 9 Unmodified _PWPPGWRAL_ 0 0 0 REV__ENST00000568731.1_1_16:50335583-50335724:+|nuORF REV__ENST00000568731.1_1_16:50335583-50335724:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2006225585938 3 360.531021 1078.57123 -0.036893 -1.3301E-05 1.5479 0.00055806 1.511 0.00054476 360.53169373078464 15.997 0.21366 16.002 15.952 16.166 0.0050564 22 18 2 0 0 0 0.21367 1 8041 8041 2.7352 0 1 411120 + 48376 28951 32692 33435 56337 56337 0.03509190125214445 PWPWVGVANPQ 11 Unmodified _PWPWVGVANPQ_ 0 0 0 ENST00000583444.1_1_17:80189502-80189688:+|nuORF ENST00000583444.1_1_17:80189502-80189688:+|nuORF ENST00000583444.1_1_17:80189502-80189688:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.5484008789062 3 417.548741 1249.62439 0.38685 0.00016153 -0.23491 -9.8088E-05 0.15194 6.3441E-05 417.5486344370665 63.689 0.23367 63.203 63.061 63.295 -0.48617 16 10 2 0 0 0 0.70701 1 34744 34744 1.4551 0 1 1463400 48377 15586 32693 33436 56338 56338 0.009565231172246058 PWQAGDKWGQT 11 Unmodified _PWQAGDKWGQT_ 0 0 0 REV__nc|ENSG00000106078|O75128-6|COBL REV__nc|ENSG00000106078|O75128-6|COBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.8054809570312 2 637.301644 1272.58874 1.0834 0.00069044 1.3021 0.00082983 2.3855 0.0015203 637.3020175552806 102.69 0.055588 96.516 96.487 96.543 -6.1757 19 11 2 0 0 0 0.48615 1 68900 68900 17.113 0.1706 1 7372800 + 48378 18488 32694 33437 56339 56339 -0.03665559130445217 PWRKWEWREAR 11 Unmodified _PWRKWEWREAR_ 0 0 0 ENST00000381989.3_1_13:25072288-25074457:-|nuORF ENST00000381989.3_1_13:25072288-25074457:-|nuORF ENST00000381989.3_1_13:25072288-25074457:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.4151611328125 2 800.418208 1598.82186 NaN NaN NaN NaN NaN NaN NaN 45.172 1 40.32 39.82 40.82 -4.852 0 0 0 0.94165 1 27683 27683 1.3295 0 1 48379 12623 32695 33438 56340 56340 0.046405423798660195 PWRNSQQYE 9 Unmodified _PWRNSQQYE_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM;ENAM|p.S456N|1|0.21|ENSG00000132464|chr4:70642793-70642793|G/A|missense_variant ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.1875915527344 3 403.187871 1206.54179 -0.57504 -0.00023185 -0.3316 -0.0001337 -0.90663 -0.00036554 403.18771980320844 18.468 0.26794 18.468 18.352 18.62 0 130 32 5 0 0 0 0.46501 1 9134 9134 6.1918 2.0752 1 99447000 48380 4409 32696 33439 56341 56341 -0.05322418681566887 PWRNWRWWQER 11 Unmodified _PWRNWRWWQER_ 0 0 0 REV__ENST00000510393.5_1_1:16083148-16084686:+|nuORF REV__ENST00000510393.5_1_1:16083148-16084686:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 850.4199829101562 2 850.421282 1698.82801 NaN NaN NaN NaN NaN NaN NaN 86.127 1 86.189 85.689 86.689 0.061638 0 0 0 0.9435 1 47759 47759 0 0 1 + 48381 28143 32697 33440 56342 56342 0.006550606113705726 PWRPKGLSV 9 Unmodified _PWRPKGLSV_ 0 0 0 ENST00000470749.1_1_3:51977316-51977406:+|nuORF ENST00000470749.1_1_3:51977316-51977406:+|nuORF ENST00000470749.1_1_3:51977316-51977406:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.3057861328125 2 520.306001 1038.59745 0.28147 0.00014645 -1.3788 -0.0007174 -1.0973 -0.00057095 520.3052494403711 97.022 0.76825 96.718 96.099 96.867 -0.30472 73 44 3 0 0 0 0.54444 1 53036 53036 4.756 0.81161 1 2782000 48382 13858 32698 33441 56343 56343 0.07969459296691639 PWRRRQRWRRR 11 Unmodified _PWRRRQRWRRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.9977416992188 2 855.001431 1707.98831 NaN NaN NaN NaN NaN NaN NaN 95.198 1 95.202 94.702 95.702 0.004158 0 0 0 0.9435 1 52894 52894 0 0 1 48383 12387 32699 33442 56344 56344 0.16263453118926918 PWRRRQRWRRR 11 Unmodified _PWRRRQRWRRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.0722045898438 2 855.001431 1707.98831 NaN NaN NaN NaN NaN NaN NaN 96.774 1 96.767 96.267 97.267 -0.007019 0 0 0 0.9435 1 53743 53743 0 0 1 48384 12387 32699 33442 56345 56345 0.16263453118926918 PWRWRHDLSWL 11 Unmodified _PWRWRHDLSWL_ 0 0 0 REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF REV__ENST00000586361.5_1_19:36387800-36388662:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 776.3995361328125 2 776.402027 1550.7895 NaN NaN NaN NaN NaN NaN NaN 68.718 1 68.718 68.218 69.218 0 0 0 0 0.94216 1 38299 38299 0.96228 0.65524 1 + 48385 26519 32700 33443 56346 56346 0.036137549768909594 PWSEIRNISF 10 Unmodified _PWSEIRNISF_ 0 0 0 ENSG00000092820|ENST00000367075|EZR;ENSG00000137710|ENST00000645495|RDX;nc|ENSG00000137710|P35241-5|RDX;nc|ENSG00000137710|P35241-4|RDX;ENSG00000147065|ENST00000360270|MSN ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.82568359375 2 624.822212 1247.62987 1.196 0.00074726 0.52611 0.00032872 1.7221 0.001076 624.823192878101 66.481 0.1773 66.49 66.342 66.519 0.0095596 20 8 3 0 0 0 0.11654 1 36471 36471 43.982 24.62 1 3299500 48386 1622 32701 33444 56347 56347 0.01596201909046613 PWSPSWPFPR 10 Unmodified _PWSPSWPFPR_ 0 0 0 ENST00000511998.1_1_3:129034238-129036147:+|nuORF ENST00000511998.1_1_3:129034238-129036147:+|nuORF ENST00000511998.1_1_3:129034238-129036147:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 628.8099365234375 2 628.81419 1255.61383 NaN NaN NaN NaN NaN NaN NaN 58.302 1 52.227 51.727 52.727 -6.0745 0 0 0 0.85122 1 37350 37350 10.074 0 1 48387 14618 32702 33445 56348 56348 -0.003754595372129188 PWTVVPRQ 8 Unmodified _PWTVVPRQ_ 0 0 0 REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7783813476562 2 491.777077 981.5396 0.85669 0.0004213 1.3204 0.00064933 2.1771 0.0010706 491.7775029462465 73.157 0.30693 72.681 72.497 72.804 -0.47588 25 13 3 0 0 0 0.80676 1 40029 40029 2.5775 0 1 1066900 + 48388 27410 32703 33446 56349 56349 0.04809197371275786 PWTVVPRQ 8 Unmodified _PWTVVPRQ_ 0 0 0 REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF REV__ENST00000466584.5_1_7:44259663-44260543:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.777077 981.5396 0.36872 0.00018133 1.7023 0.00083713 2.071 0.0010185 491.7776384885935 72.77 0.26814 72.77 72.637 72.905 0 0.10053 -0.00020004 NaN 2.5775 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1915200 + 48389 27410 32703 33446 0.04809197371275786 PWVAHHHH 8 Unmodified _PWVAHHHH_ 0 0 0 REV__nc|nan|P58505-3|C21orf58 REV__nc|nan|P58505-3|C21orf58 MSMS AL20221201_MKP_PDAC_01 4 510.7486267089844 2 510.749185 1019.48382 NaN NaN NaN NaN NaN NaN NaN 55.258 1 49.337 48.837 49.837 -5.9211 0 0 0 0.78208 1 35154 35154 24.21 0.42018 1 + 48390 21533 32704 33447 56350 56350 -0.025145910256810566 PWWCRRST 8 Unmodified _PWWCRRST_ 0 0 0 REV__ENST00000561809.1_1_16:75579966-75590016:-|nuORF REV__ENST00000561809.1_1_16:75579966-75590016:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7882080078125 2 546.26381 1090.51307 0.29022 0.00015854 -1.1188 -0.00061115 -0.82856 -0.00045261 546.2629756833081 53.55 0.37941 53.099 52.9 53.28 -0.45173 25 18 2 0 0 0 8.7369 1 29068 29068 2.8892 0 1 1384900 + 48391 28848 32705 33448 56351 56351 -0.028568147917212627 PWWGLCGV 8 Unmodified _PWWGLCGV_ 0 0 0 REV__ENST00000511185.5_1_4:2814082-2826487:+|nuORF REV__ENST00000511185.5_1_4:2814082-2826487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.4407348632812 1 917.433821 916.426544 0.3101 0.0002845 2.3575 0.0021628 2.6676 0.0024473 917.4358302288772 59.582 0.33529 59.582 59.4 59.736 0 18 14 2 0 0 0 0.80975 1 33268 33268 0.79363 0 1 775210 + 48392 28155 32706 33449 56352 56352 -0.035011943462677664 PWWQWLKWRRL 11 Unmodified _PWWQWLKWRRL_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.9578857421875 2 827.959512 1653.90447 NaN NaN NaN NaN NaN NaN NaN 18.122 1 18.122 17.622 18.622 0 0 0 0 0.9435 1 8986 8986 0 0 1 48393 15171 32707 33450 56353 56353 0.10367484178641462 PWWQWLKWRRL 11 Unmodified _PWWQWLKWRRL_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.9573974609375 2 827.959512 1653.90447 NaN NaN NaN NaN NaN NaN NaN 22.636 1 22.636 22.136 23.136 0 0 0 0 0.9435 1 11516 11516 0 0 1 48394 15171 32707 33450 56354 56354 0.10367484178641462 PWWWWIWWQW 10 Unmodified _PWWWWIWWQW_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 830.3883056640625 2 830.387857 1658.76116 NaN NaN NaN NaN NaN NaN NaN 57.857 1 51.83 51.33 52.33 -6.0275 0 0 0 1.0019 1 37033 37033 0.45834 0.15131 1 48395 77 32708 33451 56355 56355 -0.0418694293241515 PWYFWGETF 9 Unmodified _PWYFWGETF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.774169921875 2 616.7742 1231.53385 NaN NaN NaN NaN NaN NaN NaN 91.832 1 91.832 91.332 92.332 0 0 0 0 0.8622 1 50783 50783 0 0 1 48396 1685 32709 33452 56356 56356 -0.07265945931067108 PYACKLLFQEL 11 Carbamidomethyl (C) _PYAC(Carbamidomethyl (C))KLLFQEL_ PYAC(1)KLLFQEL PYAC(100)KLLFQEL 0 1 0 ENSG00000047315|ENST00000314595|POLR2B;nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B ENSG00000047315|ENST00000314595|POLR2B;nc|ENSG00000013503|Q9NW08-2|POLR3B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.86572265625 2 691.362856 1380.71116 0.2428 0.00016787 0.95932 0.00066324 1.2021 0.00083111 691.3635704864149 93.567 0.35626 87.391 87.247 87.603 -6.1757 58 21 3 0 0 0 8.4394E-07 2 61993 61861;61993 104.48 64.245 1 27555000 48397 681;475 32710 33453 56357;56358 56358 29;50 0.03603141556754963 PYACTDLAVY 10 Unmodified _PYACTDLAVY_ 0 0 0 ENSG00000181240|ENST00000321510|SLC25A41 ENSG00000181240|ENST00000321510|SLC25A41 ENSG00000181240|ENST00000321510|SLC25A41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2608642578125 2 558.257525 1114.5005 0.87938 0.00049092 1.6557 0.00092433 2.5351 0.0014153 558.2590177107331 73.201 0.39407 72.725 72.519 72.913 -0.47588 57 17 5 0 0 0 0.60623 1 40009 40009 10.824 0 1 6088500 48398 8959 32711 33454 56359 56359 -0.05217315765253261 PYADQVFRI 9 Unmodified _PYADQVFRI_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7937622070312 2 554.792924 1107.57129 -0.014536 -8.0646E-06 0.75443 0.00041855 0.73989 0.00041049 554.7934044812957 61.317 0.31501 60.828 60.694 61.009 -0.48932 22 14 2 0 0 0 0.171 1 33404 33404 34.402 13.948 1 2545900 48399 10070 32712 33455 56360 56360 0.021811453345662812 PYADQVFRI 9 Unmodified _PYADQVFRI_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.792924 1107.57129 0.46686 0.00025901 0.88474 0.00049085 1.3516 0.00074986 554.7935747135947 60.982 0.31841 60.938 60.745 61.064 -0.04351 -0.031578 4.1077E-05 NaN 34.402 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1712200 48400 10070 32712 33455 0.021811453345662812 PYAEGFIQGH 10 Unmodified _PYAEGFIQGH_ 0 0 0 ENST00000360311.4_1_3:32030681-32030846:+|nuORF ENST00000360311.4_1_3:32030681-32030846:+|nuORF ENST00000360311.4_1_3:32030681-32030846:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7634887695312 2 559.766906 1117.51926 1.048 0.00058663 -4.4134 -0.0024705 -3.3654 -0.0018838 559.7633620100626 101.46 0.11967 95.285 95.231 95.351 -6.1757 13 5 3 0 0 0 0.44373 1 68097 68097 19.257 1.122 1 14772000 48401 12162 32713 33456 56361 56361 -0.03480018079198999 PYAGSTAF 8 Unmodified _PYAGSTAF_ 0 0 0 nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5 nc|ENSG00000176842|P78411-2|IRX5 nc|ENSG00000176842|P78411-2|IRX5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1896362304688 2 407.192511 812.370469 NaN NaN NaN NaN NaN NaN NaN 35.969 1 35.969 35.469 36.469 0 0 0 0 0.9706 1 19048 19048 6.3541 1.1234 1 48402 8624 32714 33457 56362 56362 -0.04322123982103676 PYAKPIPAQF 10 Unmodified _PYAKPIPAQF_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3138427734375 2 566.313492 1130.61243 0.74097 0.00041962 -0.22827 -0.00012927 0.5127 0.00029035 566.3133407138619 47.946 0.23783 47.594 47.452 47.69 -0.3526 20 11 2 0 0 0 0.01173 1 25681 25681 88.954 65.805 1 5526300 48403 4846 32715 33458 56363 56363 0.05234906374039383 PYAKPIPAQF 10 Unmodified _PYAKPIPAQF_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3138427734375 2 566.313492 1130.61243 0.7821 0.00044292 -0.60663 -0.00034355 0.17547 9.9371E-05 566.3135477393811 47.666 0.36993 47.627 47.435 47.805 -0.038647 44 17 4 0 0 0 0.0015532 2 25639 25639;25740 107.19 84.039 1 18638000 48404 4846 32715 33458 56364;56365 56364 0.05234906374039383 PYAKPIPAQF 10 Unmodified _PYAKPIPAQF_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.313720703125 2 566.313492 1130.61243 0.72894 0.00041281 0.085714 4.8541E-05 0.81466 0.00046135 566.3133443432906 53.217 0.3696 47.413 47.234 47.603 -5.8042 57 22 3 0 0 0 0.0042881 2 33658 33535;33658 118.89 97.358 1 74316000 48405 4846 32715 33458 56366;56367 56367 0.05234906374039383 PYAPSGEIPKF 11 Unmodified _PYAPSGEIPKF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3133544921875 2 603.313689 1204.61282 0.2413 0.00014558 -0.87384 -0.0005272 -0.63254 -0.00038162 603.3127562268551 54.823 0.18216 54.756 54.622 54.804 -0.066936 14 8 2 0 0 0 0.10142 1 29798 29798 42.312 29.27 1 3897100 48406 2677 32716 33459 56368 56368 0.0187028130321778 PYAPSGEIPKF 11 Unmodified _PYAPSGEIPKF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 603.313689 1204.61282 0.26011 0.00015693 -0.15756 -9.5061E-05 0.10255 6.1867E-05 603.3132752266661 55.132 0.2202 54.654 54.471 54.691 -0.47798 -0.003628 -4.5058E-05 NaN 42.312 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5655200 48407 2677 32716 33459 0.0187028130321778 PYAPSGEIPKF 11 Unmodified _PYAPSGEIPKF_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 603.313689 1204.61282 0.57812 0.00034879 0.35562 0.00021455 0.93373 0.00056333 603.8147999001485 60.711 0.25536 54.564 54.412 54.667 -6.1478 -0.094326 0.00057416 NaN 42.312 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 18111000 48408 2677 32716 33459 0.0187028130321778 PYAQQLRVF 9 Unmodified _PYAQQLRVF_ 0 0 0 ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33;ENST00000575153.5_1_17:5347527-5364435:-|nuORF;ENST00000433302.7_1_17:5357282-5372070:-|nuORF ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.309326171875 2 561.308741 1120.60293 0.12886 7.2329E-05 0.72351 0.00040611 0.85236 0.00047844 561.3090743267217 53.7 0.095325 53.636 53.613 53.708 -0.063423 10 8 2 0 0 0 0.019303 1 29145 29145 64.236 39.562 1 5087400 48409 297 32717 33460 56369 56369 0.047451380885149774 PYARHYYF 8 Unmodified _PYARHYYF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.767822265625 2 558.766709 1115.51886 0.40509 0.00022635 1.0423 0.00058239 1.4474 0.00080874 558.7672810677599 82.291 0.30231 82.291 82.084 82.386 0 18 13 2 0 0 0 0.80143 1 45655 45655 5.7604 0 1 496430 48410 4865 32718 33461 56370 56370 -0.03427393008382751 PYAVESYEPV 10 Unmodified _PYAVESYEPV_ 0 0 0 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2744750976562 2 577.274229 1152.53391 0.69328 0.00040021 0.30184 0.00017424 0.99512 0.00057445 577.2745829613378 73.21 0.32724 73.21 73.028 73.355 0 30 15 3 0 0 0 0.37389 1 40736 40736 23.148 8.3102 1 5101800 + 48411 20033 32719 33462 56371 56371 -0.036259907217072396 PYAVLLEAL 9 Unmodified _PYAVLLEAL_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 988.5692138671875 1 988.57136 987.564084 0.27782 0.00027465 -0.39779 -0.00039325 -0.11997 -0.0001186 988.5713745245753 95.856 0.30177 95.488 95.355 95.656 -0.36814 27 16 2 0 0 0 0.22317 2 52317 52317;52419 20.871 6.2895 1 603410 48412 2806 32720 33463 56372;56373 56372 0.06980412734139918 PYAVLLEAL 9 Unmodified _PYAVLLEAL_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7901611328125 2 494.789318 987.564084 0.52323 0.00025889 0.12687 6.2775E-05 0.6501 0.00032166 494.7893846048003 95.903 0.34273 95.535 95.355 95.697 -0.36815 37 18 3 0 0 0 0.085487 2 52327 52327;52420 36.466 27.119 1 1153900 48413 2806 32720 33463 56374;56375 56374 0.06980412734139918 PYAVLLEAL 9 Unmodified _PYAVLLEAL_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7884521484375 2 494.789318 987.564084 1.1777 0.00058273 -2.058 -0.0010183 -0.88029 -0.00043556 494.78786439576277 100.41 0.18856 94.232 94.141 94.33 -6.1757 27 11 4 0 0 0 0.058206 1 67139 67139 42.968 10.851 1 57285000 48414 2806 32720 33463 56376 56376 0.06980412734139918 PYAVLLEAL 9 Unmodified _PYAVLLEAL_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 988.57136 987.564084 2.4695 0.0024413 0.85616 0.00084637 3.3257 0.0032877 988.5723513539606 95.361 0.261 95.366 95.292 95.553 0.004158 -0.061195 0.00078056 NaN 20.871 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2458000 48415 2806 32720 33463 0.06980412734139918 PYAVLLEAL 9 Unmodified _PYAVLLEAL_ 0 0 0 ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A ENSG00000111652|ENST00000543155|COPS7A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 494.789318 987.564084 2.3422 0.0011589 -0.43302 -0.00021426 1.9092 0.00094464 494.7892398035284 95.455 0.24469 95.459 95.265 95.51 0.0041504 -0.11232 -0.00043394 NaN 36.466 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 905310 48416 2806 32720 33463 0.06980412734139918 PYAVSTAM 8 Unmodified _PYAVSTAM_ 0 0 0 ENST00000464104.5_1_9:98997744-99012284:-|nuORF;ENSG00000130948|ENST00000375263|HSD17B3 ENST00000464104.5_1_9:98997744-99012284:-|nuORF ENST00000464104.5_1_9:98997744-99012284:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.5343322753906 2 420.202021 838.38949 NaN NaN NaN NaN NaN NaN NaN 20.951 1 20.951 20.451 21.451 0 0 0 0 0.97444 1 10568 10568 2.3027 1.5091 1 48417 4280 32721 33464 56377 56377 -0.03616910682683283 PYCEATLLQQL 11 Carbamidomethyl (C) _PYC(Carbamidomethyl (C))EATLLQQL_ PYC(1)EATLLQQL PYC(65)EATLLQQL 0 1 0 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 ENSG00000106524|ENST00000306999|ANKMY2 MSMS AL20221201_MKP_PDAC_01 4 668.3322143554688 2 668.334295 1334.65404 NaN NaN NaN NaN NaN NaN NaN 85.488 1 79.312 78.812 79.812 -6.1757 0 0 0 0.040278 1 56306 56306 65.235 52.193 1 48418 2434 32722 33465 56378 56378 243 9.674280408944469E-05 PYCLLWNEY 9 Unmodified _PYCLLWNEY_ 0 0 0 REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF REV__ENST00000560730.5_1_15:50757272-50769512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8520812988281 3 400.85132 1199.53213 NaN NaN NaN NaN NaN NaN NaN 19.792 1 19.792 19.292 20.292 0 0 0 0 0.84369 1 9924 9924 1.1933 0.41681 1 + 48419 20337 32723 33466 56379 56379 -0.0596532301130992 PYCQVTTRSF 10 Unmodified _PYCQVTTRSF_ 0 0 0 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 ENSG00000143126|ENST00000271332|CELSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.2984008789062 2 601.287148 1200.55974 0.18324 0.00011018 -1.1186 -0.00067261 -0.93539 -0.00056244 601.2864589079153 51.987 0.25476 51.928 51.792 52.047 -0.058918 24 11 3 0 0 0 0.52888 1 28094 28094 14.838 0 1 3036400 48420 5464 32724 33467 56380 56380 -0.03251419751109097 PYCSPPMTF 9 Carbamidomethyl (C),Oxidation (M) _PYC(Carbamidomethyl (C))SPPM(Oxidation (M))TF_ PYC(1)SPPMTF PYCSPPM(1)TF PYC(130)SPPMTF PYCSPPM(130)TF 0 1 1 ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1 ENST00000576921.1_1_16:3072866-3073436:-|nuORF ENST00000576921.1_1_16:3072866-3073436:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2311401367188 2 558.230453 1114.44635 0.93826 0.00052377 0.81067 0.00045254 1.7489 0.0009763 558.2305624104413 52.409 0.32951 46.675 46.563 46.892 -5.7345 28 17 2 0 0 0 0.0021514 2 33067 33067;33183 131.3 105.9 1 33190000 48421 2104 32725 33468 56381;56382 56381 208 360 -0.10629231188477206 PYCYTIDVEI 10 Unmodified _PYCYTIDVEI_ 0 0 0 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 ENSG00000124279|ENST00000264669|FASTKD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2808837890625 2 608.28374 1214.55293 0.22721 0.00013821 -4.4151 -0.0026856 -4.1879 -0.0025474 608.2802279671755 53.017 0.24032 53.017 52.88 53.12 0 24 11 3 0 0 0 0.54684 1 29332 29332 13.906 0.86358 1 1474200 48422 3773 32726 33469 56383 56383 -0.04576777422289524 PYDAMWLDI 9 Unmodified _PYDAMWLDI_ 0 0 0 ENSG00000214013|ENST00000318010|GANC;ENST00000567421.1_1_15:42570725-42619667:+|nuORF ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.17578125 3 375.175804 1122.50558 NaN NaN NaN NaN NaN NaN NaN 59.637 1 59.584 59.084 60.084 -0.053062 0 0 0 0.82283 1 32511 32511 4.897 2.6142 1 48423 10474 32727 33470 56384 56384 -0.05077011902653794 PYDHSWDY 8 Unmodified _PYDHSWDY_ 0 0 0 REV__nc|ENSG00000290584|Q9P1P4|TAAR3P REV__nc|ENSG00000290584|Q9P1P4|TAAR3P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7160034179688 2 541.714339 1081.41412 NaN NaN NaN NaN NaN NaN NaN 27.396 1 27.396 26.896 27.896 0 0 0 0 0.9706 1 14113 14113 6.3541 3.4649 1 + 48424 30029 32728 33471 56385 56385 -0.12332559275614585 PYDKTHISI 9 Unmodified _PYDKTHISI_ 0 0 0 REV__nc|ENSG00000005889|P17010-2|ZFX REV__nc|ENSG00000005889|P17010-2|ZFX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2869873046875 2 537.284931 1072.55531 -0.43107 -0.00023161 0.70316 0.00037779 0.27208 0.00014619 537.2867450736196 28.635 0.16421 28.635 28.558 28.723 0 17 7 3 0 0 0 0.45045 1 14813 14813 10.074 0 1 2559800 + 48425 16976 32729 33472 56386 56386 0.021934390976639406 PYDPGCNAQE 10 Unmodified _PYDPGCNAQE_ 0 0 0 REV__ENST00000333486.3_1_3:49845277-49845492:-|nuORF REV__ENST00000333486.3_1_3:49845277-49845492:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1470947265625 3 365.146684 1092.41822 0.4136 0.00015102 -2.9427 -0.0010745 -2.5291 -0.00092348 365.1466017159539 42.39 0.3475 42.39 42.218 42.565 0 43 16 4 0 0 0 0.69377 1 22921 22921 1.7423 0 1 3108400 + 48426 25622 32730 33473 56387 56387 -0.12428837844208829 PYDPPLEFNL 10 Unmodified _PYDPPLEFNL_ 0 0 0 REV__ENSG00000013561|ENST00000394520|RNF14 REV__ENSG00000013561|ENST00000394520|RNF14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.796142578125 2 602.797872 1203.58119 0.080046 4.8251E-05 -0.65544 -0.0003951 -0.5754 -0.00034685 602.7974131710996 67.502 0.67016 67.502 67.226 67.896 0 109 30 6 0 0 0 0.60623 1 37759 37759 10.824 0.024421 1 153220000 + 48427 17077 32731 33474 56388 56388 -0.012457114507014921 PYDQYLHRF 9 Unmodified _PYDQYLHRF_ 0 0 0 ENST00000586392.1_1_19:34884680-34890938:+|nuORF;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI ENST00000586392.1_1_19:34884680-34890938:+|nuORF ENST00000586392.1_1_19:34884680-34890938:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5365600585938 3 413.536612 1237.58801 NaN NaN NaN NaN NaN NaN NaN 43.334 1 43.318 42.818 43.818 -0.015667 0 0 0 0.053277 1 23223 23223 51.415 46.368 1 + 48428 204 32732 33475 56389 56389 -0.021283537794943186 PYDQYLHRF 9 Unmodified _PYDQYLHRF_ 0 0 0 ENST00000586392.1_1_19:34884680-34890938:+|nuORF;CON__Q3ZBD7;ENSG00000105220|ENST00000356487|GPI;nc|ENSG00000105220|P06744-2|GPI ENST00000586392.1_1_19:34884680-34890938:+|nuORF ENST00000586392.1_1_19:34884680-34890938:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5379333496094 3 413.536612 1237.58801 1.255 0.000519 0.28327 0.00011714 1.5383 0.00063614 413.53683144598745 48.496 0.27845 43.1 42.925 43.203 -5.3961 27 16 2 0 0 0 0.014417 1 30148 30148 63.227 46.953 1 15289000 + 48429 204 32732 33475 56390 56390 -0.021283537794943186 PYDSFCMM 8 Unmodified _PYDSFCMM_ 0 0 0 REV__ENST00000478432.1_1_1:146687269-146696621:-|nuORF REV__ENST00000478432.1_1_1:146687269-146696621:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.1797790527344 2 497.179375 992.344196 -0.045737 -2.274E-05 0.98441 0.00048943 0.93867 0.00046669 497.17990789876853 56.299 0.67751 56.299 56.028 56.705 0 125 30 6 0 0 0 0.80676 1 31333 31333 2.5775 0 1 23041000 + 48430 19812 32733 33476 56391 56391 -0.15228220531730585 PYDSRWEFPRD 11 Unmodified _PYDSRWEFPRD_ 0 0 0 ENST00000509092.5_1_4:55124935-55146696:+|nuORF;ENSG00000134853|ENST00000257290|PDGFRA;nc|ENSG00000134853|P16234-3|PDGFRA ENST00000509092.5_1_4:55124935-55146696:+|nuORF ENST00000509092.5_1_4:55124935-55146696:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.8938903808594 3 489.893236 1466.65788 0.78067 0.00038244 0.12838 6.2892E-05 0.90905 0.00044534 489.89329398279807 42.93 0.38925 38.246 38.041 38.431 -4.6846 51 24 3 0 0 0 0.631 1 25943 25943 9.7643 0 1 17395000 48431 4647 32734 33477 56392 56392 -0.05678519901539403 PYDYDDEWDD 10 Unmodified _PYDYDDEWDD_ 0 0 0 REV__nc|ENSG00000255302|Q9Y6B2-2|EID1 REV__nc|ENSG00000255302|Q9Y6B2-2|EID1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 666.7305297851562 2 666.73058 1331.44661 NaN NaN NaN NaN NaN NaN NaN 15.408 1 15.414 14.914 15.914 0.0057774 0 0 0 1.0061 1 7678 7678 0 0 1 + 48432 24534 32735 33478 56393 56393 -0.205858614539693 PYECTNYYD 9 Unmodified _PYECTNYYD_ 0 0 0 REV__nc|ENSG00000087087|Q9BXP5-5|SRRT REV__nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS AL20221201_MKP_PDAC_01 4 390.1485900878906 3 389.814823 1166.42264 NaN NaN NaN NaN NaN NaN NaN 12.1 1 9.6181 9.1181 10.118 -2.482 0 0 0 0.86031 1 6105 6105 0.23584 0.028987 1 + 48433 17776 32736 33479 56394 56394 -0.15391373421311982 PYECTNYYD 9 Unmodified _PYECTNYYD_ 0 0 0 REV__nc|ENSG00000087087|Q9BXP5-5|SRRT REV__nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS AL20221201_MKP_PDAC_01 4 389.8147277832031 3 389.814823 1166.42264 NaN NaN NaN NaN NaN NaN NaN 12.475 1 9.993 9.493 10.493 -2.482 0 0 0 0.85359 1 6311 6311 1.0715 0.10919 1 + 48434 17776 32736 33479 56395 56395 -0.15391373421311982 PYEDLLRQELR 11 Unmodified _PYEDLLRQELR_ 0 0 0 ENSG00000135750|ENST00000366621|KCNK1 ENSG00000135750|ENST00000366621|KCNK1 ENSG00000135750|ENST00000366621|KCNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 716.3826904296875 2 716.383165 1430.75178 -0.12495 -8.951E-05 -1.3876 -0.00099402 -1.5125 -0.0010835 716.3819894998925 38.532 0.18927 38.246 38.114 38.303 -0.28687 21 8 3 0 0 0 0.69316 1 20270 20270 4.897 2.3985 1 2802300 48435 4737 32737 33480 56396 56396 0.05363199200769486 PYEEQLHRC 9 Unmodified _PYEEQLHRC_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7687377929688 2 587.769123 1173.52369 0.6763 0.00039751 -2.528 -0.0014859 -1.8517 -0.0010884 587.76759737238 75.155 0.28293 74.678 74.538 74.821 -0.47714 19 12 2 0 0 0 0.48152 1 41139 41139 8.5933 0.68312 1 1831800 48436 4014 32738 33481 56397 56397 -0.05612876927943944 PYEEQLHRC 9 Unmodified _PYEEQLHRC_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 587.769123 1173.52369 0.42439 0.00024944 -4.6176 -0.0027141 -4.1932 -0.0024646 587.766251734222 74.64 0.15669 74.686 74.616 74.773 0.045959 0.004225 -0.0010965 NaN 8.5933 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 620460 48437 4014 32738 33481 -0.05612876927943944 PYEGGFFLF 9 Unmodified _PYEGGFFLF_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7590942382812 2 538.758018 1075.50148 0.76582 0.00041259 1.8323 0.00098717 2.5981 0.0013998 538.7587725321832 101.44 0.13093 95.262 95.178 95.309 -6.1757 9 6 2 0 0 0 0.18118 1 68080 68080 18.135 3.5533 1 24090000 48438 6634 32739 33482 56398 56398 -0.03324733334056873 PYEMFGDEEV 10 Unmodified _PYEMFGDEEV_ 0 0 0 nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;ENSG00000244414|ENST00000320493|CFHR1 nc|ENSG00000000971|P08603|CFH nc|ENSG00000000971|P08603|CFH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8335571289062 3 405.833995 1214.48016 0.035121 1.4253E-05 0.041332 1.6774E-05 0.076453 3.1027E-05 405.83389754682815 63.452 0.36843 63.452 63.244 63.612 0 41 19 3 0 0 0 0.67033 1 35353 35353 3.3196 0 1 5686600 48439 252 32740 33483 56399 56399 -0.11850531215736737 PYEPDSVVMV 10 Oxidation (M) _PYEPDSVVM(Oxidation (M))V_ PYEPDSVVM(1)V PYEPDSVVM(68)V 0 0 1 ENST00000545518.1_1_16:71950471-71955437:+|nuORF ENST00000545518.1_1_16:71950471-71955437:+|nuORF ENST00000545518.1_1_16:71950471-71955437:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2674560546875 2 576.26809 1150.52163 0.16551 9.5379E-05 -0.45823 -0.00026406 -0.29272 -0.00016868 576.2680574783411 43.685 0.39391 43.685 43.486 43.88 0 46 20 3 0 0 0 0.02987 1 23684 23684 68.081 6.7232 1 70211000 48440 15094 32741 33484 56400 56400 1778 -0.047613504564196774 PYEPDSVVMV 10 Unmodified _PYEPDSVVMV_ 0 0 0 ENST00000545518.1_1_16:71950471-71955437:+|nuORF ENST00000545518.1_1_16:71950471-71955437:+|nuORF ENST00000545518.1_1_16:71950471-71955437:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.7947387695312 2 568.270632 1134.52671 0.78929 0.00044853 -0.42736 -0.00024286 0.36193 0.00020567 568.2707689537073 65.132 0.50191 58.956 58.734 59.236 -6.1757 68 27 3 0 0 0 0.18632 1 42251 42251 32.305 6.9062 1 57934000 48441 15094 32741 33485 56401 56401 -0.03517046593788109 PYEQYYAFM 9 Unmodified _PYEQYYAFM_ 0 0 0 REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF REV__ENST00000488743.6_1_2:27425876-27434347:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.5075988769531 3 404.507442 1210.5005 NaN NaN NaN NaN NaN NaN NaN 14.557 1 14.557 14.057 15.057 0 0 0 0 0.85737 1 6929 6929 0.26902 0.033176 1 + 48442 20298 32742 33486 56402 56402 -0.09633315765290718 PYESIWHIF 9 Unmodified _PYESIWHIF_ 0 0 0 REV__ENST00000471706.1_1_1:145457217-145470350:-|nuORF REV__ENST00000471706.1_1_1:145457217-145470350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.290771484375 2 596.295299 1190.57605 -0.65025 -0.00038774 -0.80194 -0.00047819 -1.4522 -0.00086593 596.2949249961064 34.327 0.4817 34.327 34.175 34.656 0 80 24 4 0 0 0 0.48152 1 18248 18248 8.5933 0 1 26130000 + 48443 27498 32743 33487 56403 56403 -0.011619705226848964 PYESLMDPK 9 Unmodified _PYESLMDPK_ 0 0 0 REV__ENSG00000112972|ENST00000325110|HMGCS1 REV__ENSG00000112972|ENST00000325110|HMGCS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7575073242188 2 540.257525 1078.5005 0.90404 0.00048841 -0.56104 -0.0003031 0.343 0.00018531 540.2570888443261 85.961 0.6088 79.785 79.462 80.071 -6.1757 66 33 3 0 0 0 0.30562 1 56520 56520 16.942 4.4107 1 15811000 + 48444 18845 32744 33488 56404 56404 -0.03561315765273321 PYESQVYSL 9 Unmodified _PYESQVYSL_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.748779296875 2 543.261122 1084.50769 -0.14709 -7.9906E-05 2.1594 0.0011731 2.0123 0.0010932 543.2599500072737 51.968 0.3927 51.968 51.71 52.103 0 49 17 5 0 0 0 0.19496 1 28664 28664 13.906 1.3745 1 12796000 48445 4868 32745 33489 56405 56405 -0.03118259893199138 PYFFSVERF 9 Unmodified _PYFFSVERF_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2922973632812 2 596.295299 1190.57605 0.001188 7.084E-07 -1.0816 -0.00064495 -1.0804 -0.00064424 596.2948013938485 34.281 0.33244 34.308 34.123 34.456 0.027401 23 15 2 0 0 0 0.21242 1 18142 18142 5.2307 0 1 1809700 + 48446 16953 32746 33490 56406 56406 -0.011619705226848964 PYFGNKCHL 9 Unmodified _PYFGNKCHL_ 0 0 0 ENST00000606070.1_1_6:108279764-108279845:+|nuORF ENST00000606070.1_1_6:108279764-108279845:+|nuORF ENST00000606070.1_1_6:108279764-108279845:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1763305664062 3 360.176138 1077.50659 NaN NaN NaN NaN NaN NaN NaN 26.686 1 26.715 26.215 27.215 0.028664 0 0 0 0.7243 1 13851 13851 5.2969 2.5617 1 48447 15850 32747 33491 56407 56407 -0.02906752743092511 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2784423828125 2 542.279118 1082.54368 0.32455 0.000176 0.80983 0.00043915 1.1344 0.00061515 542.2794054266088 83.13 0.47423 82.633 82.488 82.962 -0.49751 63 18 5 0 0 0 0.012158 1 45475 45475 74.396 54.957 1 16041000 48448 2655 32748 33492 56408 56408 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2800903320312 2 542.279118 1082.54368 1.2479 0.00067669 0.15516 8.4139E-05 1.403 0.00076083 542.2791728699583 82.442 0.44512 82.504 82.296 82.741 0.061996 58 16 5 0 0 0 0.0089973 2 45663 45556;45663 86.121 65.25 1 84513000 48449 2655 32748 33492 56409;56410 56410 0.0057124207430661045 PYFNAPVYL 9 Unmodified _PYFNAPVYL_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2797241210938 2 542.279118 1082.54368 1.0741 0.00058247 1.6017 0.00086858 2.6758 0.001451 542.2798422639805 90.524 0.71783 84.348 84.156 84.873 -6.1757 123 42 4 0 0 0 0.012158 3 59873 59742;59873;60028 74.396 56.261 1 275660000 48450 2655 32748 33492 56411;56412;56413 56412 0.0057124207430661045 PYFNGSQGY 9 Unmodified _PYFNGSQGY_ 0 0 0 ENST00000413344.5_1_10:103347064-103347972:-|nuORF ENST00000413344.5_1_10:103347064-103347972:-|nuORF ENST00000413344.5_1_10:103347064-103347972:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.7234497070312 2 516.724707 1031.43486 NaN NaN NaN NaN NaN NaN NaN 35.43 1 31.237 30.737 31.737 -4.1928 0 0 0 0.29524 1 20550 20550 25.399 0.72543 1 48451 12998 32749 33493 56414 56414 -0.07959968895943348 PYFNVSQQF 9 Unmodified _PYFNVSQQF_ 0 0 0 nc|ENSG00000054983|P54803-5|GALC;nc|ENSG00000054983|P54803-4|GALC;nc|ENSG00000054983|P54803-3|GALC;ENSG00000054983|ENST00000261304|GALC nc|ENSG00000054983|P54803-5|GALC nc|ENSG00000054983|P54803-5|GALC MSMS AL20221201_MKP_PDAC_01 4 565.2700805664062 2 565.269281 1128.52401 NaN NaN NaN NaN NaN NaN NaN 71.606 1 65.43 64.93 65.93 -6.1757 0 0 0 0.36554 1 46805 46805 21.747 7.165 1 48452 769 32750 33494 56415 56415 -0.03511133936422084 PYFPIPEEYTF 11 Unmodified _PYFPIPEEYTF_ 0 0 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU;ENST00000468690.2_2_1:245021279-245021477:-|nuORF nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.8320922851562 2 701.831911 1401.64927 0.45176 0.00031706 0.23626 0.00016581 0.68802 0.00048288 702.333556458136 99.955 0.1283 93.779 93.727 93.855 -6.1757 12 8 2 0 0 0 0.18424 1 66752 66752 49.933 28.396 1 34803000 48453 6245 32751 33495 56416 56416 -0.035488865907382205 PYFQRPLAL 9 Unmodified _PYFQRPLAL_ 0 0 0 nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH nc|ENSG00000116761|P32929-3|CTH nc|ENSG00000116761|P32929-3|CTH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8131103515625 2 552.813659 1103.61277 0.39908 0.00022062 0.090424 4.9988E-05 0.4895 0.0002706 552.81361542373 60.546 0.37155 60.503 60.393 60.765 -0.04351 38 18 3 0 0 0 0.0087873 1 33037 33037 92.822 60.705 1 14186000 48454 3253 32752 33496 56417 56417 0.06510326093894037 PYFSANAQF 9 Unmodified _PYFSANAQF_ 0 0 0 nc|ENSG00000155034|Q96ME1-2|FBXL18;ENSG00000155034|ENST00000382368|FBXL18;nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 nc|ENSG00000155034|Q96ME1-2|FBXL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7426147460938 2 522.742899 1043.47125 0.74323 0.00038852 2.7212 0.0014225 3.4644 0.001811 522.7440497443915 65.92 0.28482 59.744 59.613 59.898 -6.1757 24 16 2 0 0 0 0.026094 1 42820 42820 57.471 43.963 1 15362000 48455 6363 32753 33497 56418 56418 -0.04875091999247161 PYFSKLLLNL 10 Unmodified _PYFSKLLLNL_ 0 0 0 ENST00000554446.5_1_14:23416818-23424363:-|nuORF;ENST00000554349.5_1_14:23417204-23426210:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-2|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;nc|ENSG00000092036|Q9H6D7-4|HAUS4;ENSG00000092036|ENST00000541587|HAUS4 ENST00000554446.5_1_14:23416818-23424363:-|nuORF ENST00000554446.5_1_14:23416818-23424363:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3599853515625 2 604.357899 1206.70125 0.23646 0.00014291 0.1447 8.7448E-05 0.38116 0.00023036 604.3578163023004 101.93 0.37488 95.754 95.582 95.957 -6.1757 74 21 4 0 0 0 0.68719 1 68322 68322 4.3292 0.73274 1 44710000 48456 1601 32754 33498 56419 56419 0.10616321613724722 PYFSPCYSI 9 Carbamidomethyl (C) _PYFSPC(Carbamidomethyl (C))YSI_ PYFSPC(1)YSI PYFSPC(44)YSI 0 1 0 ENSG00000167333|ENST00000300747|TRIM68;nc|ENSG00000167333|Q6AZZ1-2|TRIM68;ENST00000531101.5_1_11:4621508-4624512:-|nuORF ENSG00000167333|ENST00000300747|TRIM68 ENSG00000167333|ENST00000300747|TRIM68 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2548828125 2 567.252243 1132.48993 0.94928 0.00053848 1.041 0.00059048 1.9902 0.001129 567.2524655533875 75.474 0.47803 69.299 69.102 69.58 -6.1757 57 25 3 0 0 0 0.052168 1 49354 49354 44.407 26.272 1 16163000 48457 7601 32755 33499 56420 56420 735 -0.07101298419706836 PYGCNECGKGF 11 Unmodified _PYGCNECGKGF_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7349243164062 2 587.736434 1173.45831 0.094843 5.5743E-05 -1.208 -0.00071001 -1.1132 -0.00065427 587.7356313120576 80.666 0.50912 80.666 80.495 81.004 0 45 23 3 0 0 0 0.70701 1 44764 44764 3.5965 1.2938 1 1012200 48458 10798 32756 33500 56421 56421 -0.12147614445302679 PYGFSNMRY 9 Unmodified _PYGFSNMRY_ 0 0 0 ENSG00000014824|ENST00000264451|SLC30A9 ENSG00000014824|ENST00000264451|SLC30A9 ENSG00000014824|ENST00000264451|SLC30A9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2012939453125 3 378.839415 1133.49641 -0.48697 -0.00018448 2.4458 0.00092658 1.9589 0.0007421 378.8396713254398 25.727 0.39546 25.727 25.466 25.862 0 36 18 3 0 0 0 0.21242 1 13235 13235 1.1933 0 1 1371200 48459 487 32757 33501 56422 56422 -0.06499360468319537 PYGHLSFGF 9 Unmodified _PYGHLSFGF_ 0 0 0 nc|ENSG00000129226|P34810-2|CD68;nc|ENSG00000129226|P34810-3|CD68;ENSG00000129226|ENST00000250092|CD68;ENST00000581621.1_1_17:7483060-7484826:+|nuORF nc|ENSG00000129226|P34810-2|CD68 nc|ENSG00000129226|P34810-2|CD68 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2930297851562 2 512.747985 1023.48142 1.1006 0.00056434 0.16699 8.5625E-05 1.2676 0.00064996 512.747622696056 65.778 0.27717 65.788 65.633 65.911 0.0095596 22 13 2 0 0 0 0.15246 1 36048 36048 26.341 6.9023 1 3564100 48460 4123 32758 33502 56423 56423 -0.02938484274000075 PYGNIQSRL 9 Unmodified _PYGNIQSRL_ 0 0 0 ENST00000492568.1_1_1:230398346-230398752:+|nuORF;ENSG00000143641|ENST00000366672|GALNT2 ENST00000492568.1_1_1:230398346-230398752:+|nuORF ENST00000492568.1_1_1:230398346-230398752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2817993164062 2 524.282723 1046.55089 -0.36069 -0.00018911 1.5017 0.00078731 1.141 0.0005982 524.283461609293 37.071 0.27554 36.821 36.667 36.942 -0.2497 29 11 3 0 0 0 0.012668 1 19447 19447 72.968 42.331 1 6566400 48461 5540 32759 33503 56424 56424 0.02947974674748366 PYGNIQSRL 9 Unmodified _PYGNIQSRL_ 0 0 0 ENST00000492568.1_1_1:230398346-230398752:+|nuORF;ENSG00000143641|ENST00000366672|GALNT2 ENST00000492568.1_1_1:230398346-230398752:+|nuORF ENST00000492568.1_1_1:230398346-230398752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2826538085938 2 524.282723 1046.55089 -0.32124 -0.00016842 1.0157 0.00053251 0.69446 0.00036409 524.2831557696086 36.749 0.22011 36.771 36.661 36.881 0.021542 21 9 3 0 0 0 0.013609 1 19478 19478 70.332 22.583 1 3505200 48462 5540 32759 33503 56425 56425 0.02947974674748366 PYGPRYVPE 9 Unmodified _PYGPRYVPE_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.779296875 2 539.271824 1076.5291 0.19965 0.00010766 1.3024 0.00070234 1.502 0.00081001 539.2693829046995 37.713 0.45887 37.713 37.51 37.969 0 44 22 4 0 0 0 0.49272 1 20079 20079 7.9102 0 1 1790900 48463 10627 32760 33504 56426 56426 -0.006108300738333128 PYGTPASPY 9 Unmodified _PYGTPASPY_ 0 0 0 ENSG00000069011|ENST00000265340|PITX1 ENSG00000069011|ENST00000265340|PITX1 ENSG00000069011|ENST00000265340|PITX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7257080078125 2 476.724175 951.433798 0.63238 0.00030147 2.053 0.0009787 2.6854 0.0012802 476.72502945904756 44.358 0.30367 39.506 39.328 39.632 -4.852 34 22 2 0 0 0 0.023164 1 26981 26981 60.39 14.369 1 9733000 48464 995 32761 33505 56427 56427 -0.04386183264853116 PYHDYFYTI 9 Unmodified _PYHDYFYTI_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.77685546875 2 609.776939 1217.53933 -0.022 -1.3415E-05 0.73881 0.00045051 0.71681 0.00043709 609.7773395638475 61.51 0.2367 61.02 60.88 61.116 -0.48932 19 10 2 0 0 0 0.23158 1 33485 33485 20.454 13.164 1 2166300 48465 536 32762 33506 56428 56428 -0.06074267139251788 PYHDYFYTI 9 Unmodified _PYHDYFYTI_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.776939 1217.53933 0.45728 0.00027884 0.65777 0.00040109 1.1151 0.00067993 609.776467721854 61.076 0.1368 61.032 60.927 61.064 -0.043507 0.0058523 -7.7937E-05 NaN 20.454 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2418000 48466 536 32762 33506 -0.06074267139251788 PYHPHPHVF 9 Unmodified _PYHPHPHVF_ 0 0 0 ENST00000557261.1_1_14:89816083-89817451:-|nuORF;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3 ENST00000557261.1_1_14:89816083-89817451:-|nuORF ENST00000557261.1_1_14:89816083-89817451:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5224609375 3 377.522526 1129.54575 NaN NaN NaN NaN NaN NaN NaN 23.292 1 23.305 22.805 23.805 0.012396 0 0 0 0.053568 1 11873 11873 48.346 36.851 1 48467 742 32763 33507 56429 56429 -0.013842843972042829 PYHPHPHVF 9 Unmodified _PYHPHPHVF_ 0 0 0 ENST00000557261.1_1_14:89816083-89817451:-|nuORF;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3 ENST00000557261.1_1_14:89816083-89817451:-|nuORF ENST00000557261.1_1_14:89816083-89817451:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8571472167969 3 377.522526 1129.54575 0.1513 5.7118E-05 -0.79658 -0.00030073 -0.64529 -0.00024361 377.522138157402 23.154 0.17165 23.172 23.03 23.202 0.01749 12 8 2 0 0 0 0.047696 1 11912 11912 32.305 24.697 1 2773900 48468 742 32763 33507 56430 56430 -0.013842843972042829 PYHPHPHVF 9 Unmodified _PYHPHPHVF_ 0 0 0 ENST00000557261.1_1_14:89816083-89817451:-|nuORF;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3 ENST00000557261.1_1_14:89816083-89817451:-|nuORF ENST00000557261.1_1_14:89816083-89817451:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.85595703125 3 377.522526 1129.54575 0.75854 0.00028637 -0.42502 -0.00016045 0.33352 0.00012591 377.5223896633997 26.264 0.35168 23.313 23.15 23.502 -2.9511 38 19 2 0 0 0 0.028712 2 14380 14380;14504 39.957 39.957 1 30038000 48469 742 32763 33507 56431;56432 56431 -0.013842843972042829 PYHPLHIL 8 Unmodified _PYHPLHIL_ 0 0 0 REV__ENST00000282120.6_1_2:85547086-85547299:-|nuORF REV__ENST00000282120.6_1_2:85547086-85547299:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2799072265625 2 495.281995 988.549437 NaN NaN NaN NaN NaN NaN NaN 74.788 1 74.788 74.288 75.288 0 0 0 0 0.97444 1 41610 41610 0.79363 0.19213 1 + 48470 25203 32764 33508 56433 56433 0.05470385376668219 PYHRSSARL 9 Unmodified _PYHRSSARL_ 0 0 0 REV__ENST00000524830.1_1_11:85468947-85522086:-|nuORF REV__ENST00000524830.1_1_11:85468947-85522086:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2857666015625 2 543.793789 1085.57303 0.39778 0.00021631 2.5615 0.0013929 2.9592 0.0016092 543.7951924888471 82.343 0.24725 81.848 81.742 81.989 -0.4952 15 9 2 0 0 0 0.21242 1 45052 45052 5.2307 0 1 890940 + 48471 28337 32765 33509 56434 56434 0.03366199143169979 PYHVSKFVLAF 11 Unmodified _PYHVSKFVLAF_ 0 0 0 REV__ENSG00000131459|ENST00000253778|GFPT2 REV__ENSG00000131459|ENST00000253778|GFPT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.57568359375 3 436.576408 1306.70739 0.92978 0.00040592 0.10376 4.53E-05 1.0335 0.00045122 436.57648866054967 75.59 0.57082 69.414 69.009 69.58 -6.1757 42 30 2 0 0 0 0.68777 1 49429 49429 5.4027 0 1 7567200 + 48472 19792 32766 33510 56435 56435 0.06630839845229275 PYHVSKFVLAF 11 Unmodified _PYHVSKFVLAF_ 0 0 0 REV__ENSG00000131459|ENST00000253778|GFPT2 REV__ENSG00000131459|ENST00000253778|GFPT2 MSMS AL20221201_MKP_PDAC_01 4 436.575927734375 3 436.576408 1306.70739 NaN NaN NaN NaN NaN NaN NaN 75.997 1 69.821 69.321 70.321 -6.1757 0 0 0 0.8958 1 49714 49714 7.4771 0.43998 1 + 48473 19792 32766 33510 56436 56436 0.06630839845229275 PYIIAGLHF 9 Unmodified _PYIIAGLHF_ 0 0 0 ENST00000574155.1_1_17:79864303-79864642:-|nuORF;nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2 ENST00000574155.1_1_17:79864303-79864642:-|nuORF ENST00000574155.1_1_17:79864303-79864642:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.789306640625 2 515.789653 1029.56475 0.77238 0.00039839 -1.4192 -0.00073201 -0.64682 -0.00033362 515.7888396085556 80.791 0.26231 80.848 80.677 80.939 0.057587 22 9 3 0 0 0 0.016115 1 44656 44656 67.413 33.311 1 4660300 48474 9416 32767 33511 56437 56437 0.051152521738458745 PYIIAGLHF 9 Unmodified _PYIIAGLHF_ 0 0 0 ENST00000574155.1_1_17:79864303-79864642:-|nuORF;nc|ENSG00000185813|Q99447-2|PCYT2;nc|ENSG00000185813|Q99447-4|PCYT2;ENSG00000185813|ENST00000538936|PCYT2;nc|ENSG00000185813|Q99447-3|PCYT2 ENST00000574155.1_1_17:79864303-79864642:-|nuORF ENST00000574155.1_1_17:79864303-79864642:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7906494140625 2 515.789653 1029.56475 1.3241 0.00068298 0.12827 6.6162E-05 1.4524 0.00074914 515.7898541961996 96.618 0.2177 90.442 90.289 90.506 -6.1757 22 12 2 0 0 0 0.01018 1 63987 63987 79.935 47.818 1 16002000 48475 9416 32767 33511 56438 56438 0.051152521738458745 PYIIDLPSW 9 Unmodified _PYIIDLPSW_ 0 0 0 nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.7900390625 2 552.292225 1102.5699 0.4858 0.0002683 0.3388 0.00018712 0.8246 0.00045542 552.2931911223095 100.59 0.099388 94.417 94.389 94.488 -6.1757 9 6 2 0 0 0 0.047039 1 67320 67320 53.576 29.555 1 20455000 48476 1577 32768 33512 56439 56439 0.02271511245817237 PYIIHTVLY 9 Unmodified _PYIIHTVLY_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8165283203125 2 559.815867 1117.61718 1.2108 0.00067782 0.12035 6.7375E-05 1.3312 0.0007452 559.8159722080196 64.396 0.3141 64.385 64.214 64.528 -0.010529 50 15 4 0 0 0 0.016494 1 35214 35214 67.035 38.548 1 32824000 48477 4011 32769 33513 56440 56440 0.06307790516802925 PYIPGVPYY 9 Unmodified _PYIPGVPYY_ 0 0 0 REV__nc|ENSG00000183283|Q15038-2|DAZAP2 REV__nc|ENSG00000183283|Q15038-2|DAZAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7693481445312 2 534.773668 1067.53278 -0.35875 -0.00019185 -3.6584 -0.0019564 -4.0172 -0.0021483 534.7720198491186 26.793 0.6289 26.793 26.343 26.972 0 45 29 2 0 0 0 0.22317 1 13802 13802 20.871 2.7362 1 1434000 + 48478 23333 32770 33514 56441 56441 0.0017183970003316063 PYIQQSMYGR 10 Unmodified _PYIQQSMYGR_ 0 0 0 ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENST00000478357.1_1_10:81036939-81053539:+|nuORF ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MSMS AL20221201_MKP_PDAC_01 4 621.798583984375 2 621.800423 1241.58629 NaN NaN NaN NaN NaN NaN NaN 87.504 1 81.328 80.828 81.828 -6.1757 0 0 0 0.64375 1 57710 57710 19.257 2.3147 1 48479 2549 32771 33515 56442 56442 -0.02483730859762545 PYISNIYLI 9 Unmodified _PYISNIYLI_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.3072509765625 2 548.307875 1094.6012 0.37352 0.0002048 -0.67996 -0.00037283 -0.30645 -0.00016803 548.3074005269928 90.49 0.35838 89.995 89.781 90.139 -0.49457 34 16 3 0 0 0 0.087258 2 49435 49435;49538 36.044 20.197 1 1627300 48480 1365 32772 33516 56443;56444 56443 0.05768084279884533 PYISNIYLI 9 Unmodified _PYISNIYLI_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3085327148438 2 548.307875 1094.6012 0.43177 0.00023674 -0.18915 -0.00010371 0.24262 0.00013303 548.307740977738 89.925 0.35574 89.967 89.776 90.131 0.042175 23 12 2 0 0 0 0.0090851 2 49979 49979;50087 85.357 43.262 1 14015000 48481 1365 32772 33516 56445;56446 56445 0.05768084279884533 PYISNIYLI 9 Unmodified _PYISNIYLI_ 0 0 0 ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 ENSG00000083444|ENST00000196061|PLOD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3091430664062 2 548.307875 1094.6012 0.91042 0.00049919 -0.49047 -0.00026893 0.41996 0.00023027 548.3074262056194 99.478 0.21055 93.302 93.188 93.399 -6.1757 32 13 3 0 0 0 0.0083087 1 66211 66211 97.075 48.729 1 142950000 48482 1365 32772 33516 56447 56447 0.05768084279884533 PYISQAYVI 9 Unmodified _PYISQAYVI_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2833251953125 2 527.2844 1052.55425 0.463 0.00024413 1.0095 0.00053228 1.4725 0.00077641 527.2844925120307 67.652 0.31443 67.17 66.985 67.299 -0.48218 23 13 2 0 0 0 0.023164 1 36949 36949 60.39 38.643 1 1634500 48483 2424 32773 33517 56448 56448 0.030072247287534992 PYITEHTGF 9 Unmodified _PYITEHTGF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7567749023438 2 532.756007 1063.49746 0.65985 0.00035154 1.231 0.00065584 1.8909 0.0010074 532.7562167472748 42.391 0.17011 42.391 42.318 42.488 0 9 7 2 0 0 0 0.087258 1 22968 22968 36.044 16.787 1 1917400 48484 2191 32774 33518 56449 56449 -0.031748228277592716 PYITEHTGF 9 Unmodified _PYITEHTGF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.3003540039062 2 532.756007 1063.49746 0.51745 0.00027568 0.86326 0.00045991 1.3807 0.00073558 532.756099952311 48.096 0.19987 42.862 42.74 42.94 -5.2339 15 11 2 0 0 0 0.07019 1 29897 29897 36.044 6.9626 1 8085700 48485 2191 32774 33518 56450 56450 -0.031748228277592716 PYKLQWQQYF 10 Unmodified _PYKLQWQQYF_ 0 0 0 REV__ENSG00000140718|ENST00000471389|FTO REV__ENSG00000140718|ENST00000471389|FTO MSMS AL20221201_MKP_PDAC_01 4 467.5719604492188 3 467.571434 1399.69247 NaN NaN NaN NaN NaN NaN NaN 46.775 1 41.694 41.194 42.194 -5.0805 0 0 0 0.91523 1 28957 28957 3.8763 0 1 + 48486 20490 32775 33519 56451 56451 0.008613479772293431 PYKNVNVQNF 10 Unmodified _PYKNVNVQNF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8142700195312 2 611.814387 1221.61422 0.041235 2.5228E-05 0.26458 0.00016188 0.30582 0.0001871 611.8144637983089 37.77 0.16874 37.499 37.375 37.544 -0.27133 16 7 3 0 0 0 0.035244 1 19855 19855 68.081 44.06 1 3483300 48487 4211 32776 33520 56452 56452 0.012279153919735109 PYKNVNVQNF 10 Unmodified _PYKNVNVQNF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.81396484375 2 611.814387 1221.61422 NaN NaN NaN NaN NaN NaN NaN 37.42 1 37.441 36.941 37.941 0.021545 0 0 0 0.12115 1 19859 19859 58.679 43.841 1 48488 4211 32776 33520 56453 56453 0.012279153919735109 PYKNVNVQNF 10 Unmodified _PYKNVNVQNF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3157958984375 2 611.814387 1221.61422 0.6371 0.00038979 -1.3855 -0.00084767 -0.74841 -0.00045789 611.8132645534895 42.24 0.30366 37.555 37.406 37.709 -4.6846 37 18 3 0 0 0 0.0022709 2 25443 25443;25586 115.69 81.59 1 25613000 48489 4211 32776 33520 56454;56455 56454 0.012279153919735109 PYKQLSLL 8 Unmodified _PYKQLSLL_ 0 0 0 REV__ENST00000494567.1_1_15:99759074-99762030:-|nuORF REV__ENST00000494567.1_1_15:99759074-99762030:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2914733886719 2 481.289485 960.564418 1.1566 0.00055667 4.2742 0.0020571 5.4308 0.0026138 481.2918665516157 59.326 0.48041 53.251 53.011 53.492 -6.0745 38 26 2 0 0 0 0.42423 1 38067 38067 42.095 0.27733 1 26145000 + 48490 27938 32777 33521 56456 56456 0.08255832453994572 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL ENST00000494618.1_1_2:232322276-232325237:-|nuORF ENST00000494618.1_1_2:232322276-232325237:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7819213867188 2 546.782222 1091.54989 -0.43627 -0.00023854 0.027062 1.4797E-05 -0.4092 -0.00022375 546.7822091435099 34.052 0.52464 34.052 33.841 34.365 0 71 26 4 0 0 0 0.0086493 2 17833 17833;17945 121.53 58.961 1 310010000 48491 3081 32778 33522 56457;56458 56457 0.007777155151643456 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL ENST00000494618.1_1_2:232322276-232325237:-|nuORF ENST00000494618.1_1_2:232322276-232325237:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.78173828125 2 546.782222 1091.54989 0.14045 7.6795E-05 1.1432 0.00062509 1.2837 0.00070188 546.7828717457242 33.897 0.2198 33.926 33.837 34.057 0.028934 23 9 3 0 0 0 0.016448 1 17852 17852 72.968 29.11 1 3906600 48492 3081 32778 33522 56459 56459 0.007777155151643456 PYKVTQDEL 9 Unmodified _PYKVTQDEL_ 0 0 0 ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENSG00000115053|ENST00000322723|NCL ENST00000494618.1_1_2:232322276-232325237:-|nuORF ENST00000494618.1_1_2:232322276-232325237:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.782470703125 2 546.782222 1091.54989 0.24561 0.0001343 0.1685 9.2132E-05 0.41411 0.00022643 546.78241534286 38.633 0.62207 34.264 33.932 34.554 -4.3689 131 39 5 0 0 0 0.0058084 3 22800 22673;22800;22937 125.04 68.181 1 645140000 48493 3081 32778 33522 56460;56461;56462 56461 0.007777155151643456 PYKYKLRYRYT 11 Unmodified _PYKYKLRYRYT_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.955078125 3 517.620788 1549.84053 0.82726 0.00042821 0.65862 0.00034091 1.4859 0.00076912 517.6207242861636 57.381 0.27629 57.315 57.181 57.458 -0.066032 45 13 4 0 0 0 0.71728 1 31198 31198 2.6312 1.3016 1 9613600 48494 3283 32779 33523 56463 56463 0.08760659231052159 PYKYKLRYRYT 11 Unmodified _PYKYKLRYRYT_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 517.620788 1549.84053 0.59236 0.00030662 -0.73432 -0.0003801 -0.14196 -7.3482E-05 517.6202128046175 57.099 0.13691 57.099 56.998 57.135 0 -0.10799 -0.0016835 NaN 2.6312 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 662870 48495 3283 32779 33523 0.08760659231052159 PYLAAHRRI 9 Unmodified _PYLAAHRRI_ 0 0 0 nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 nc|ENSG00000214022|Q9BWE0|REPIN1 MSMS AL20221201_MKP_PDAC_01 4 366.2174377441406 3 366.217325 1095.63015 NaN NaN NaN NaN NaN NaN NaN 21.389 1 18.654 18.154 19.154 -2.7348 0 0 0 0.25233 1 11449 11449 27.629 9.2557 1 48496 10476 32780 33524 56464 56464 0.0861566641956415 PYLDKFFAL 9 Unmodified _PYLDKFFAL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.30322265625 2 557.302593 1112.59063 0.039073 2.1775E-05 0.3584 0.00019974 0.39747 0.00022151 557.3025679555915 98.924 0.15273 92.749 92.689 92.841 -6.1757 15 10 2 0 0 0 0.011291 1 65750 65750 76.825 32.966 1 52189000 48497 3233 32781 33525 56465 56465 0.03884101625476433 PYLDNLPNF 9 Unmodified _PYLDNLPNF_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7719116210938 2 546.771657 1091.52876 NaN NaN NaN NaN NaN NaN NaN 78.485 1 77.999 77.499 78.499 -0.48596 0 0 0 0.41346 1 42987 42987 19.257 6.2145 1 48498 2129 32782 33526 56466 56466 -0.013342497936719155 PYLDNLPNF 9 Unmodified _PYLDNLPNF_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1;ENSG00000189369|ENST00000340438|GSPT2 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.3106689453125 2 546.771657 1091.52876 0.54404 0.00029747 -2.1398 -0.00117 -1.5957 -0.00087249 546.7706740073284 85.721 0.22976 79.545 79.445 79.674 -6.1757 19 12 2 0 0 0 0.1325 1 56451 56451 25.399 19.667 1 13166000 48499 2129 32782 33526 56467 56467 -0.013342497936719155 PYLDPNFS 8 Unmodified _PYLDPNFS_ 0 0 0 REV__ENST00000574951.5_1_17:4883690-4883894:-|nuORF REV__ENST00000574951.5_1_17:4883690-4883894:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7242431640625 2 476.724175 951.433798 NaN NaN NaN NaN NaN NaN NaN 38.137 1 38.137 37.637 38.637 0 0 0 0 0.77249 1 20347 20347 24.674 0 1 + 48500 29013 32783 33527 56468 56468 -0.04386183264853116 PYLDQLWL 8 Unmodified _PYLDQLWL_ 0 0 0 REV__ENSG00000177427|ENST00000323019|MIEF2 REV__ENSG00000177427|ENST00000323019|MIEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2838745117188 2 524.279118 1046.54368 1.0233 0.00053651 -1.5987 -0.00083815 -0.57534 -0.00030164 524.2782449974432 41.612 0.6534 37.004 36.624 37.277 -4.6079 126 42 4 0 0 0 0.40035 1 24854 24854 44.407 10.305 1 166820000 + 48501 22982 32784 33528 56469 56469 0.022272420743320254 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2628784179688 2 598.760955 1195.50736 0.05445 3.2602E-05 1.5059 0.00090169 1.5604 0.00093429 598.7612691863525 72.482 0.43306 72.482 72.178 72.611 0 59 17 5 0 0 0 0.15471 1 40307 40307 38.151 30.862 1 3851400 48502 10661 32785 33529 56470 56470 -0.08257679613029723 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.761474609375 2 598.760955 1195.50736 0.70999 0.00042512 0.32245 0.00019307 1.0324 0.00061818 598.7609266406299 72.949 0.57105 72.473 72.146 72.717 -0.47588 56 25 3 0 0 0 0.047788 2 39954 39860;39954 60.39 35.716 1 9443400 48503 10661 32785 33529 56471;56472 56472 -0.08257679613029723 PYLDSFYEY 9 Unmodified _PYLDSFYEY_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7615356445312 2 598.760955 1195.50736 0.17506 0.00010482 0.63592 0.00038077 0.81098 0.00048558 598.7610181537483 80.851 0.43869 74.676 74.424 74.863 -6.1757 68 23 4 0 0 0 0.10247 2 53083 52964;53083 44.407 34.333 1 66391000 48504 10661 32785 33529 56473;56474 56474 -0.08257679613029723 PYLDTLQIP 9 Unmodified _PYLDTLQIP_ 0 0 0 REV__nc|ENSG00000163531|O94856|NFASC REV__nc|ENSG00000163531|O94856|NFASC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.313720703125 2 530.289682 1058.56481 0.64588 0.0003425 1.4704 0.00077974 2.1163 0.0011222 530.2897419777595 68.222 0.091286 62.046 61.975 62.067 -6.1757 5 4 2 0 0 0 0.1474 1 44470 44470 28.487 11.374 1 4784700 + 48505 21780 32786 33530 56475 56475 0.037872073831977104 PYLEAHDY 8 Unmodified _PYLEAHDY_ 0 0 0 nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A nc|ENSG00000159398|Q6NT32-3|CES5A nc|ENSG00000159398|Q6NT32-3|CES5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2272033691406 2 504.227082 1006.43961 -0.29995 -0.00015124 -0.44539 -0.00022458 -0.74534 -0.00037582 504.2269817014216 30.123 0.16536 30.123 30.057 30.222 0 11 7 2 0 0 0 0.5284 1 15645 15645 32.117 16.27 1 2893900 48506 6652 32787 33531 56476 56476 -0.06335084753197862 PYLESGISLF 10 Unmodified _PYLESGISLF_ 0 0 0 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2960815429688 2 563.294965 1124.57538 0.11243 6.3329E-05 4.1473 0.0023362 4.2597 0.0023995 563.2966255867121 61.503 0.25745 61.013 60.838 61.095 -0.48932 16 11 2 0 0 0 0.19662 1 33498 33498 34.102 1.3168 1 1155700 48507 455 32788 33532 56477 56477 0.0180719003762988 PYLEVLETM 9 Unmodified _PYLEVLETM_ 0 0 0 nc|ENSG00000011021|P51797-5|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1095.85888671875 1 1094.54382 1093.53655 -0.42606 -0.00046634 0.25237 0.00027623 -0.17369 -0.00019011 1094.5439060402502 82.572 0.48544 82.572 82.188 82.673 0 24 20 2 0 0 0 0.48152 1 45744 45744 8.5933 0 1 987020 48508 16018 32789 33533 56478 56478 -0.006478585883996857 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.739013671875 2 561.80276 1121.59097 0.70603 0.00039665 0.92851 0.00052164 1.6345 0.00091829 562.3047674200077 83.081 0.20477 82.583 82.467 82.672 -0.49751 13 7 2 0 0 0 0.17666 1 45497 45497 19.439 10.092 1 705380 48509 16480 32790 33534 56479 56479 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8032836914062 2 561.80276 1121.59097 1.8585 0.0010441 -1.2251 -0.00068827 0.63335 0.00035582 561.802002357305 82.31 0.51649 82.372 82.175 82.691 0.062004 60 19 4 0 0 0 0.0089973 2 45468 45468;45571 86.121 69.179 1 115900000 48510 16480 32790 33534 56480;56481 56480 0.035035213453284086 PYLFHVVTF 9 Unmodified _PYLFHVVTF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8035888671875 2 561.80276 1121.59097 1.7733 0.00099624 -0.70947 -0.00039858 1.0638 0.00059766 561.802260192763 98.273 0.33073 92.097 91.875 92.206 -6.1757 56 20 4 0 0 0 0.012158 1 65110 65110 74.396 52.65 1 704030000 48511 16480 32790 33534 56482 56482 0.035035213453284086 PYLFLNIGV 9 Unmodified _PYLFLNIGV_ 0 0 0 REV__ENSG00000158480|ENST00000289431|SPATA2 REV__ENSG00000158480|ENST00000289431|SPATA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2968139648438 2 518.29731 1034.58007 0.32335 0.00016759 -3.4315 -0.0017785 -3.1081 -0.0016109 518.2958915344203 78.274 0.2525 78.274 78.127 78.379 0 13 10 2 0 0 0 0.54444 1 43537 43537 4.756 0.42677 1 384340 + 48512 21432 32791 33535 56483 56483 0.06416118971037577 PYLGKTQKR 9 Unmodified _PYLGKTQKR_ 0 0 0 REV__ENST00000471743.1_1_2:26435372-26437931:-|nuORF REV__ENST00000471743.1_1_2:26435372-26437931:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8239135742188 2 545.822015 1089.62948 -0.19177 -0.00010467 1.0578 0.00057738 0.86606 0.00047271 545.8226751882928 37.073 0.36415 37.094 36.942 37.306 0.021545 50 16 4 0 0 0 0.52844 1 19733 19733 5.7319 0.43497 1 10866000 + 48513 17741 32792 33536 56484 56484 0.08824826979844147 PYLGQAPFL 9 Unmodified _PYLGQAPFL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.274658203125 2 503.273835 1004.53312 1.1639 0.00058577 0.10373 5.2202E-05 1.2676 0.00063797 503.273678998573 81.173 0.43369 81.233 81.019 81.452 0.059929 47 16 4 0 0 0 0.0089973 1 44852 44852 86.121 46.164 1 9090700 48514 10905 32793 33537 56485 56485 0.031032594199018604 PYLGQAPFL 9 Unmodified _PYLGQAPFL_ 0 0 0 nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;nc|ENSG00000275066|Q9UMZ2-6|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG nc|ENSG00000275066|Q9UMZ2-9|SYNRG MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2734375 2 503.273835 1004.53312 1.0904 0.00054875 -3.1011 -0.0015607 -2.0108 -0.001012 503.2739198168242 88.675 0.80377 82.5 82.079 82.882 -6.1757 114 44 4 0 0 0 0.0084408 2 58689 58569;58689 98.807 47.952 1 40658000 48515 10905 32793 33537 56486;56487 56487 0.031032594199018604 PYLHVQDTI 9 Unmodified _PYLHVQDTI_ 0 0 0 REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2 REV__nc|ENSG00000170340|Q9NY97-2|B3GNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2857666015625 2 543.284931 1084.55531 0.42359 0.00023013 2.8904 0.0015703 3.314 0.0018004 543.2859813286544 82.275 0.2692 81.78 81.65 81.919 -0.4952 15 10 2 0 0 0 0.28023 1 45052 45052 18.146 3.3081 1 621120 + 48516 22473 32794 33538 56488 56488 0.016414390976706272 PYLIKSITH 9 Unmodified _PYLIKSITH_ 0 0 0 REV__ENSG00000170255|ENST00000526914|MRGPRX1 REV__ENSG00000170255|ENST00000526914|MRGPRX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.312744140625 2 536.313492 1070.61243 0.0096938 5.1989E-06 -0.96397 -0.00051699 -0.95428 -0.00051179 536.3133583894245 33.216 0.27166 33.245 33.066 33.338 0.028934 25 11 3 0 0 0 0.10734 1 17448 17448 32.305 1.6689 1 2321000 + 48517 22460 32795 33539 56489 56489 0.07994906374028687 PYLISGSKF 9 Unmodified _PYLISGSKF_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2784423828125 2 506.279118 1010.54368 0.30427 0.00015405 -0.52407 -0.00026532 -0.2198 -0.00011128 506.2786895947636 51.838 0.20294 51.779 51.651 51.854 -0.058918 21 9 3 0 0 0 0.040683 1 28045 28045 49.554 26.406 1 2429800 48518 4754 32796 33540 56490 56490 0.03883242074334703 PYLISGSKF 9 Unmodified _PYLISGSKF_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.279118 1010.54368 0.21332 0.000108 1.1049 0.00055936 1.3182 0.00066736 506.2797144614829 52.206 0.10108 51.772 51.688 51.789 -0.43367 -0.0031637 0.0014079 NaN 49.554 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 354840 48519 4754 32796 33540 0.03883242074334703 PYLKVLGQTF 10 Unmodified _PYLKVLGQTF_ 0 0 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.33544921875 2 583.334424 1164.6543 0.87111 0.00050815 -0.56203 -0.00032785 0.30908 0.00018029 583.3343241765264 69.348 0.2332 69.379 69.227 69.46 0.030914 29 13 3 0 0 0 0.012821 1 38086 38086 82.529 38.671 1 32265000 48520 2653 32797 33541 56491 56491 0.0785546206257095 PYLKVLGQTF 10 Unmodified _PYLKVLGQTF_ 0 0 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.2687377929688 2 583.334424 1164.6543 0.89131 0.00051993 -0.82273 -0.00047992 0.068583 4.0007E-05 583.3339831030792 85.895 0.7567 79.719 79.361 80.118 -6.1757 75 42 2 0 0 0 0.21821 1 56735 56735 38.176 29.582 1 27100000 48521 2653 32797 33541 56492 56492 0.0785546206257095 PYLLDLHLF 9 Unmodified _PYLLDLHLF_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8189697265625 2 565.815867 1129.61718 4.5136 0.0025539 0.15337 8.6782E-05 4.667 0.0026407 565.8157835268014 98.964 0.16942 98.936 98.833 99.003 -0.028282 17 5 4 0 0 0 0.0090524 1 54969 54969 97.075 54.98 1 16500000 48522 3676 32798 33542 56493 56493 0.05755790516809611 PYLLDLHLF 9 Unmodified _PYLLDLHLF_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7688598632812 2 565.815867 1129.61718 0.68011 0.00038482 -2.0851 -0.0011798 -1.405 -0.00079498 565.8142800156353 100.66 0.13701 94.479 94.404 94.541 -6.1757 14 9 2 0 0 0 0.023371 1 67385 67385 57.471 30.588 1 68410000 48523 3676 32798 33542 56494 56494 0.05755790516809611 PYLLRSAAP 9 Unmodified _PYLLRSAAP_ 0 0 0 chr16:3016042-3018149|116|17.48|0.31|5.81|-|1|CLDN6,CLDN6|1 chr16:3016042-3018149|116|17.48|0.31|5.81|-|1|CLDN6,CLDN6|1 chr16:3016042-3018149|116|17.48|0.31|5.81|-|1|CLDN6,CLDN6|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2857360839844 2 494.284734 986.554916 1.1638 0.00057526 0.86453 0.00042733 2.0284 0.0010026 494.2850221674736 55.182 0.42861 49.261 49.031 49.459 -5.9211 55 26 3 0 0 0 0.070838 1 35114 35114 39.957 3.8303 1 33757000 48524 90 32799 33543 56495 56495 0.0611006416845612 PYLNQSKLL 9 Unmodified _PYLNQSKLL_ 0 0 0 ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000264006|ENST00000648824|AKR1C8 ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000198610|ENST00000263126|AKR1C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3113403320312 2 538.310949 1074.60735 0.33779 0.00018184 0.31986 0.00017218 0.65765 0.00035402 538.3110729524071 55.465 0.31164 54.987 54.841 55.152 -0.47798 41 14 3 0 0 0 0.1773 1 30156 30156 25.399 2.663 1 8409300 48525 10113 32800 33544 56496 56496 0.07302602511435907 PYLPAVPSS 9 Unmodified _PYLPAVPSS_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2536010742188 2 465.750193 929.485833 -0.28827 -0.00013426 0.81871 0.00038131 0.53044 0.00024705 465.7499852695803 32.996 0.73831 32.996 32.677 33.415 0 64 37 3 0 0 0 0.2001 1 17332 17332 23.148 0 1 8132800 48526 7710 32801 33545 56497 56497 0.01826980148905477 PYLPAVPSS 9 Unmodified _PYLPAVPSS_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7499694824219 2 465.750193 929.485833 -0.34034 -0.00015851 0.93069 0.00043347 0.59035 0.00027496 465.75051515457926 33.114 0.24195 32.955 32.81 33.052 -0.15918 14 9 2 0 0 0 0.2001 1 17281 17281 23.148 0 1 1472600 48527 7710 32801 33545 56498 56498 0.01826980148905477 PYLPFLSRF 9 Unmodified _PYLPFLSRF_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENST00000530867.1_1_11:9199613-9200479:-|nuORF;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000170456|Q6ZUT9-4|DENND5B nc|ENSG00000170456|Q6ZUT9-4|DENND5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5452270507812 3 380.546449 1138.61752 NaN NaN NaN NaN NaN NaN NaN 18.166 1 18.18 17.68 18.68 0.013865 0 0 0 0.85737 1 9088 9088 0.26902 0.033176 1 48528 9217;7987 32802 33546 56499 56499 0.05375210236661587 PYLPFLSRF 9 Unmodified _PYLPFLSRF_ 0 0 0 ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENST00000530867.1_1_11:9199613-9200479:-|nuORF;nc|ENSG00000170456|Q6ZUT9-4|DENND5B;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B ENSG00000184014|ENST00000328194|DENND5A;nc|ENSG00000170456|Q6ZUT9-4|DENND5B nc|ENSG00000170456|Q6ZUT9-4|DENND5B MSMS AL20221201_MKP_PDAC_01 4 570.3201293945312 2 570.316035 1138.61752 NaN NaN NaN NaN NaN NaN NaN 90.457 1 84.281 83.781 84.781 -6.1757 0 0 0 0.43505 1 59751 59751 18.135 2.2878 1 48529 9217;7987 32802 33546 56500 56500 0.05375210236661587 PYLQWYTSM 9 Unmodified _PYLQWYTSM_ 0 0 0 ENST00000324545.8_2_X:40996118-40996202:+|nuORF ENST00000324545.8_2_X:40996118-40996202:+|nuORF ENST00000324545.8_2_X:40996118-40996202:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7741088867188 2 594.773342 1187.53213 0.24603 0.00014633 2.54 0.0015107 2.786 0.001657 594.7751058266424 70.395 0.32004 69.916 69.693 70.013 -0.47903 41 18 4 0 0 0 0.41742 1 38519 38519 11.64 0.81637 1 4946700 48530 11801 32803 33547 56501 56501 -0.054133230113166064 PYLQWYTSM 9 Unmodified _PYLQWYTSM_ 0 0 0 ENST00000324545.8_2_X:40996118-40996202:+|nuORF ENST00000324545.8_2_X:40996118-40996202:+|nuORF ENST00000324545.8_2_X:40996118-40996202:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 594.773342 1187.53213 0.10666 6.3436E-05 3.3408 0.001987 3.4474 0.0020504 594.775168163017 69.858 0.29204 69.889 69.683 69.975 0.030914 -0.01376 0.00053764 NaN 11.64 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3354100 48531 11801 32803 33547 -0.054133230113166064 PYLSEVLTF 9 Unmodified _PYLSEVLTF_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7845458984375 2 534.784233 1067.55391 1.3419 0.00071761 0.82716 0.00044235 2.169 0.00116 534.7844594021157 92.098 0.39539 92.129 91.912 92.308 0.030197 30 14 3 0 0 0 0.023164 1 51235 51235 60.39 26.287 1 4111000 48532 9827 32804 33548 56502 56502 0.02283805008892159 PYLSEVLTF 9 Unmodified _PYLSEVLTF_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.784912109375 2 534.784233 1067.55391 0.46915 0.00025089 3.7696 0.0020159 4.2388 0.0022668 534.7869821898289 99.896 0.34083 93.72 93.558 93.898 -6.1757 31 24 2 0 0 0 0.052168 1 66673 66673 44.407 27.465 1 98552000 48533 9827 32804 33548 56503 56503 0.02283805008892159 PYLSEVLTF 9 Unmodified _PYLSEVLTF_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000558780.5_2_14:24651254-24657791:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.784233 1067.55391 0.36581 0.00019563 2.9612 0.0015836 3.327 0.0017793 534.7858789079937 92.693 0.12802 92.236 92.129 92.257 -0.45741 0.053656 0.0021319 NaN 60.39 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 337900 48534 9827 32804 33548 0.02283805008892159 PYLVVIHTL 9 Unmodified _PYLVVIHTL_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2450561523438 2 527.81841 1053.62227 0.81125 0.00042819 1.2326 0.00065058 2.0438 0.0010788 527.8192892573861 71.516 0.25619 71.555 71.386 71.642 0.039024 22 11 3 0 0 0 0.20528 1 39314 39314 8.5933 2.2392 1 1090200 48535 8055 32805 33549 56504 56504 0.09760094379430484 PYMAKFVVF 9 Oxidation (M) _PYM(Oxidation (M))AKFVVF_ PYM(1)AKFVVF PYM(44)AKFVVF 0 0 1 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.291015625 2 559.291171 1116.56779 1.2183 0.00068136 -1.2293 -0.00068755 -0.011059 -6.1854E-06 559.2905861137209 66.67 0.5189 66.68 66.48 66.999 0.0095596 59 24 4 0 0 0 0.052168 1 36566 36566 44.407 21.259 1 53564000 48536 6095;5688 32806 33550 56505 56505 1036 0.014167592363264703 PYMAKFVVF 9 Unmodified _PYMAKFVVF_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3 ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.293212890625 2 551.293714 1100.57287 1.3339 0.00073537 -1.5986 -0.00088129 -0.26469 -0.00014592 551.2927892914703 95.615 0.44746 89.439 89.23 89.678 -6.1757 72 27 3 0 0 0 0.012148 2 63293 63293;63418 74.423 52.676 1 60288000 48537 6095;5688 32806 33551 56506;56507 56506 0.026610630989580386 PYMANVYLI 9 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ PYM(1)ANVYLI PYM(57)ANVYLI 0 0 1 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2789306640625 2 550.27826 1098.54197 0.59872 0.00032946 0.29419 0.00016189 0.89292 0.00049135 550.278755555085 71.997 0.29603 71.521 71.319 71.615 -0.4761 40 11 5 0 0 0 0.027803 1 39371 39371 56.541 41.96 1 2173200 48538 6223 32807 33552 56508 56508 1107 -0.003361350059549295 PYMANVYLI 9 Oxidation (M) _PYM(Oxidation (M))ANVYLI_ PYM(1)ANVYLI PYM(40)ANVYLI 0 0 1 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2801513671875 2 550.27826 1098.54197 0.88685 0.00048802 1.3623 0.00074966 2.2492 0.0012377 550.2791101358622 71.497 0.31949 71.536 71.344 71.664 0.039024 26 14 3 0 0 0 0.068777 1 39352 39352 40.449 31.101 1 1295600 48539 6223 32807 33552 56509 56509 1107 -0.003361350059549295 PYMCHGDLLQF 11 Carbamidomethyl (C),Oxidation (M) _PYM(Oxidation (M))C(Carbamidomethyl (C))HGDLLQF_ PYMC(1)HGDLLQF PYM(1)CHGDLLQF PYMC(100)HGDLLQF PYM(100)CHGDLLQF 0 1 1 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.8027954101562 2 698.804848 1395.59514 0.33803 0.00023622 -0.23565 -0.00016467 0.10238 7.1545E-05 698.8045286359672 65.959 0.61763 59.784 59.628 60.245 -6.1757 71 35 3 0 0 0 1.3587E-06 2 42816 42816;42961 103.35 87.204 1 36294000 48540 7133 32808 33553 56510;56511 56510 697 1230 -0.08683125285574533 PYMCHGDLLQF 11 Carbamidomethyl (C) _PYMC(Carbamidomethyl (C))HGDLLQF_ PYMC(1)HGDLLQF PYMC(83)HGDLLQF 0 1 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.8076782226562 2 690.80739 1379.60023 0.33229 0.00022955 -0.92237 -0.00063718 -0.59008 -0.00040763 691.307767012659 77.575 0.59947 71.399 71.003 71.603 -6.1757 50 34 2 0 0 0 0.0010665 2 50662 50662;50804 82.529 67.281 1 15389000 48541 7133 32808 33554 56512;56513 56512 697 -0.0743882142298844 PYMCHGDLLQF 11 Carbamidomethyl (C) _PYMC(Carbamidomethyl (C))HGDLLQF_ PYMC(1)HGDLLQF PYMC(77)HGDLLQF 0 1 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.8096313476562 2 690.80739 1379.60023 0.56085 0.00038744 1.295 0.00089461 1.8559 0.001282 690.8085092716148 78.014 0.36832 71.839 71.566 71.935 -6.1757 25 20 2 0 0 0 0.0041032 1 50947 50947 76.825 58.678 1 12006000 48542 7133 32808 33554 56514 56514 697 -0.0743882142298844 PYMCHGDLLQF 11 Carbamidomethyl (C) _PYMC(Carbamidomethyl (C))HGDLLQF_ PYMC(1)HGDLLQF PYMC(89)HGDLLQF 0 1 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MSMS AL20221201_MKP_PDAC_01 4 690.8064575195312 2 690.80739 1379.60023 NaN NaN NaN NaN NaN NaN NaN 77.26 1 71.084 70.584 71.584 -6.1757 0 0 0 0.00015796 1 50533 50533 88.954 68.539 1 48543 7133 32808 33554 56515 56515 697 -0.0743882142298844 PYMCRVKTL 9 Unmodified _PYMCRVKTL_ 0 0 0 ENSG00000142677|ENST00000270800|IL22RA1 ENSG00000142677|ENST00000270800|IL22RA1 ENSG00000142677|ENST00000270800|IL22RA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.317138671875 2 555.793555 1109.57256 0.70104 0.00038963 -2.6373 -0.0014658 -1.9363 -0.0010762 555.7916728622087 85.943 0.24989 85.441 85.321 85.571 -0.502 12 9 2 0 0 0 0.20727 1 47101 47101 7.9102 1.5561 1 243840 48544 5440 32809 33555 56516 56516 0.022153201074615936 PYMDAVVSL 9 Oxidation (M) _PYM(Oxidation (M))DAVVSL_ PYM(1)DAVVSL PYM(44)DAVVSL 0 0 1 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21063687-21064617:-|nuORF;ENST00000492581.5_1_22:21062337-21064665:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7474975585938 2 505.746793 1009.47903 NaN NaN NaN NaN NaN NaN NaN 57.355 1 57.355 56.855 57.855 0 0 0 0 0.096036 1 31916 31916 44.407 26.272 1 48545 10689 32810 33556 56517 56517 1710 -0.025327007939722535 PYMDAVVSL 9 Unmodified _PYMDAVVSL_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;ENST00000466772.5_1_22:21063687-21064617:-|nuORF;ENST00000492581.5_1_22:21062337-21064665:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.8005981445312 2 497.749336 993.484119 0.9521 0.00047391 2.7255 0.0013566 3.6776 0.0018305 497.7494608718357 80.965 0.26532 74.789 74.679 74.944 -6.1757 22 14 2 0 0 0 0.05527 1 53198 53198 50.855 20.63 1 13786000 48546 10689 32810 33557 56518 56518 -0.012883969313520538 PYMDIDRDF 9 Unmodified _PYMDIDRDF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.1755676269531 3 391.174463 1170.50156 1.2262 0.00047967 1.1248 0.00043998 2.351 0.00091965 391.17472804322784 42.48 0.45079 37.795 37.559 38.009 -4.6846 59 29 3 0 0 0 0.54444 1 25756 25756 2.7352 0.23671 1 37134000 48547 1899 32811 33558 56519 56519 -0.07687101396368234 PYMDSPQSIGF 11 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ PYM(1)DSPQSIGF PYM(66)DSPQSIGF 0 0 1 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.2750854492188 2 629.276446 1256.53834 -0.42678 -0.00026856 -1.1571 -0.00072812 -1.5839 -0.00099668 629.275824788651 55.929 0.396 55.929 55.719 56.115 0 74 24 4 0 0 0 0.011312 1 31102 31102 66.457 57.074 1 28454000 48548 3504 32812 33559 56520 56520 621 -0.07966849570470913 PYMDSPQSIGF 11 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ PYM(1)DSPQSIGF PYM(66)DSPQSIGF 0 0 1 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2765502929688 2 629.276446 1256.53834 -0.91862 -0.00057807 -0.22927 -0.00014427 -1.1479 -0.00072234 629.2763777079933 56.511 0.42124 56.025 55.805 56.226 -0.48554 88 31 3 0 0 0 0.011312 2 30595 30595;30699 66.457 57.074 1 64525000 48549 3504 32812 33559 56521;56522 56521 621 -0.07966849570470913 PYMDSPQSIGF 11 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ PYM(1)DSPQSIGF PYM(72)DSPQSIGF 0 0 1 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.7777709960938 2 629.276446 1256.53834 -0.30069 -0.00018922 0.10839 6.8208E-05 -0.1923 -0.00012101 629.2767170873399 56.132 0.32406 56.063 55.942 56.266 -0.068741 39 16 3 0 0 0 0.0069872 1 30508 30508 71.922 65.199 1 6324200 48550 3504 32812 33559 56523 56523 621 -0.07966849570470913 PYMDSPQSIGF 11 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ PYM(1)DSPQSIGF PYM(76)DSPQSIGF 0 0 1 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.2776489257812 2 629.276446 1256.53834 0.80814 0.00050854 0.17639 0.000111 0.98453 0.00061954 629.2766949080736 63.555 0.64765 57.379 57.056 57.704 -6.1757 120 36 4 0 0 0 0.0047291 3 41203 40923;41069;41203 75.761 66.378 1 138430000 48551 3504 32812 33559 56524;56525;56526 56526 621 -0.07966849570470913 PYMDSPQSIGF 11 Oxidation (M) _PYM(Oxidation (M))DSPQSIGF_ PYM(1)DSPQSIGF PYM(66)DSPQSIGF 0 0 1 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MSMS AL20221201_MKP_PDAC_01 4 629.2766723632812 2 629.276446 1256.53834 NaN NaN NaN NaN NaN NaN NaN 63.886 1 57.711 57.211 58.211 -6.1757 0 0 0 0.036115 1 41343 41343 66.457 51.208 1 48552 3504 32812 33559 56527 56527 621 -0.07966849570470913 PYMDSPQSIGF 11 Unmodified _PYMDSPQSIGF_ 0 0 0 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.280517578125 2 621.278989 1240.54342 0.50163 0.00031165 -0.36365 -0.00022593 0.13798 8.5726E-05 621.2788788882526 67.497 0.3861 67.015 66.822 67.208 -0.48218 39 16 3 0 0 0 0.073964 2 36823 36823;36934 45.7 36.954 1 7334800 48553 3504 32812 33560 56528;56529 56528 -0.06722545707862082 PYMDSPQSIGF 11 Unmodified _PYMDSPQSIGF_ 0 0 0 ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 ENSG00000120265|ENST00000464889|PCMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2793579101562 2 621.278989 1240.54342 0.78783 0.00048946 0.095458 5.9306E-05 0.88329 0.00054877 621.2790522798382 74.512 0.60427 68.336 68.02 68.624 -6.1757 85 31 3 0 0 0 0.00078105 3 48816 48568;48689;48816 85.642 71.735 1 141160000 48554 3504 32812 33560 56530;56531;56532 56532 -0.06722545707862082 PYMKDLNAL 9 Unmodified _PYMKDLNAL_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.7383422851562 2 532.775885 1063.53722 1.0738 0.00057211 -0.36687 -0.00019546 0.70696 0.00037665 532.7754796814232 55.012 0.26886 49.091 49.031 49.3 -5.9211 25 16 2 0 0 0 0.033539 1 35061 35061 63.961 20.102 1 27773000 48555 2083 32813 33561 56533 56533 0.007989808513002572 PYMQVILML 9 Oxidation (M) _PYMQVILM(Oxidation (M))L_ PYMQVILM(1)L PYM(-48)QVILM(48)L 0 0 1 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2984619140625 2 562.298139 1122.58172 1.3357 0.00075104 -0.30685 -0.00017254 1.0288 0.0005785 562.2979858256474 100.42 0.15511 94.249 94.157 94.312 -6.1757 15 9 2 0 0 0 0.03327 1 67182 67182 53.576 23.351 2 25827000 48556 4011 32814 33562 56534 56534 715;716 0.0253366867314071 PYMQVILML 9 2 Oxidation (M) _PYM(Oxidation (M))QVILM(Oxidation (M))L_ PYM(1)QVILM(1)L PYM(74)QVILM(74)L 0 0 2 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MSMS AL20221201_MKP_PDAC_01 4 570.2939453125 2 570.295596 1138.57664 NaN NaN NaN NaN NaN NaN NaN 86.363 1 80.187 79.687 80.687 -6.1757 0 0 0 0.0233 1 56934 56934 74.396 36.245 1 48557 4011 32814 33563 56535 56535 715;716 0.012893648105318789 PYMSSPCHI 9 Carbamidomethyl (C),Oxidation (M) _PYM(Oxidation (M))SSPC(Carbamidomethyl (C))HI_ PYMSSPC(1)HI PYM(1)SSPCHI PYMSSPC(150)HI PYM(150)SSPCHI 0 1 1 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF nc|ENSG00000265681|P18621-3|RPL17;ENST00000498256.1_1_8:29489773-29490157:+|nuORF nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2345581054688 2 554.233527 1106.4525 0.67163 0.00037224 -0.40951 -0.00022697 0.26212 0.00014528 554.2336466364219 28.357 0.43705 25.209 24.983 25.421 -3.1482 71 22 4 0 0 0 3.299E-05 2 15726 15726;15844 154.46 112.37 1 92808000 48558 16597;14417 32815 33564 56536;56537 56536 987 1774 -0.09646712956941883 PYMSSPCHI 9 Carbamidomethyl (C) _PYMSSPC(Carbamidomethyl (C))HI_ PYMSSPC(1)HI PYMSSPC(120)HI 0 1 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000452862.1_1_3:197577273-197577471:-|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF nc|ENSG00000265681|P18621-3|RPL17;ENST00000498256.1_1_8:29489773-29490157:+|nuORF nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2359008789062 2 546.23607 1090.45759 0.23049 0.0001259 -0.6156 -0.00033626 -0.38511 -0.00021036 546.2359880176895 39.847 0.44243 35.317 35.044 35.487 -4.5294 92 29 4 0 0 0 0.0036753 2 23588 23588;23722 123.1 63.571 1 155220000 48559 16597;14417 32815 33565 56538;56539 56538 987 -0.08402409094333052 PYNAPTVKF 9 Unmodified _PYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.777099609375 2 518.776742 1035.53893 0.5659 0.00029357 0.10265 5.3255E-05 0.66855 0.00034683 518.7767359364283 46.837 0.86956 46.5 46.21 47.08 -0.33664 117 43 3 0 0 0 0.047714 1 25097 25097 45.74 25.286 1 29128000 48560 8480 32816 33566 56540 56540 0.022583579315551106 PYNAPTVKF 9 Unmodified _PYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7767944335938 2 518.776742 1035.53893 1.2421 0.00064436 -0.019979 -1.0364E-05 1.2221 0.000634 518.7766760423467 46.594 0.58912 46.561 46.267 46.856 -0.033417 66 28 3 0 0 0 0.0088668 2 25030 25030;25137 87.258 58.771 1 27250000 48561 8480 32816 33566 56541;56542 56541 0.022583579315551106 PYNAPTVKF 9 Unmodified _PYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7777099609375 2 518.776742 1035.53893 0.54415 0.00028229 0.7424 0.00038514 1.2866 0.00066743 518.7771681511705 52.108 0.6189 46.373 46.107 46.726 -5.7345 86 39 3 0 0 0 0.00023314 2 32726 32726;32871 149.91 87.341 1 139960000 48562 8480 32816 33566 56543;56544 56543 0.022583579315551106 PYNCNQCGEAF 11 Unmodified _PYNCNQCGEAF_ 0 0 0 ENSG00000196597|ENST00000481138|ZNF782 ENSG00000196597|ENST00000481138|ZNF782 ENSG00000196597|ENST00000481138|ZNF782 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.826904296875 3 415.826957 1244.45904 -0.038106 -1.5845E-05 0.38906 0.00016178 0.35095 0.00014593 415.8270872680207 37.367 0.36945 37.367 37.159 37.529 0 72 19 6 0 0 0 0.72952 1 19945 19945 0.50596 0 1 10720000 48563 9848 32817 33567 56545 56545 -0.15340819796233518 PYNDYFEYF 9 Unmodified _PYNDYFEYF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.259033203125 2 629.258579 1256.50261 0.18592 0.00011699 0.39788 0.00025037 0.5838 0.00036736 629.2587213293831 84.257 0.42105 84.257 84.044 84.465 0 72 21 4 0 0 0 0.015445 2 46743 46646;46743 68.081 55.84 1 6056600 48564 9847;3221 32818 33568 56546;56547 56547 -0.11538563755811992 PYNDYFEYF 9 Unmodified _PYNDYFEYF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2586669921875 2 629.258579 1256.50261 0.27861 0.00017532 -0.0085736 -5.395E-06 0.27003 0.00016992 629.258517099973 84.763 0.51183 84.264 84.02 84.531 -0.49961 88 22 6 0 0 0 0.010818 3 46399 46295;46399;46499 78.149 62 1 31485000 48565 9847;3221 32818 33568 56548;56549;56550 56549 -0.11538563755811992 PYNDYFEYF 9 Unmodified _PYNDYFEYF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.258056640625 2 629.258579 1256.50261 -0.058331 -3.6705E-05 0.23321 0.00014675 0.17487 0.00011004 629.7601523396581 84.253 0.22932 84.317 84.213 84.442 0.063171 15 9 2 0 0 0 0.0083938 1 46616 46616 108 86.25 1 16124000 48566 9847;3221 32818 33568 56551 56551 -0.11538563755811992 PYNDYFEYF 9 Unmodified _PYNDYFEYF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.2584228515625 2 629.258579 1256.50261 0.44456 0.00027974 0.10094 6.3519E-05 0.5455 0.00034326 629.2585549061572 92.713 0.80135 86.537 86.131 86.932 -6.1757 165 49 4 0 0 0 0.008678 5 61082 61082;61212;61334;61465;61599 88.904 67.367 1 292180000 48567 9847;3221 32818 33568 56552;56553;56554;56555;56556 56552 -0.11538563755811992 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7922973632812 2 575.792589 1149.57063 0.36717 0.00021141 -0.50438 -0.00029042 -0.13722 -7.9009E-05 575.792225102596 77.976 1.0041 77.976 77.712 78.716 0 145 46 6 0 0 0 0.33553 1 43635 43635 25.399 0 1 216290000 48568 1576;528 32819 33569 56557 56557 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2958984375 2 575.792589 1149.57063 0.50302 0.00028964 -2.4358 -0.0014025 -1.9328 -0.0011129 575.7920873876494 75.079 0.19793 75.079 74.93 75.128 0 14 11 2 0 0 0 0.21571 1 41727 41727 25.399 0 1 548300 48569 1576;528 32819 33569 56558 56558 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7902221679688 2 575.792589 1149.57063 0.85093 0.00048996 -1.053 -0.00060632 -0.20208 -0.00011636 575.7922676864584 75.518 0.32847 75.041 74.884 75.212 -0.47713 41 18 3 0 0 0 0.074936 2 41307 41307;41406 52.268 0 1 5090800 48570 1576;528 32819 33569 56559;56560 56559 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7926025390625 2 575.792589 1149.57063 0.5377 0.00030961 -1.1493 -0.00066175 -0.61158 -0.00035214 575.7920164697264 79.069 0.47607 78.583 78.323 78.799 -0.48596 64 20 4 0 0 0 0.0575 2 43349 43251;43349 56.177 0 1 7841100 48571 1576;528 32819 33569 56561;56562 56562 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.7921752929688 2 575.792589 1149.57063 0.52564 0.00030266 -2.7573 -0.0015876 -2.2316 -0.001285 575.7902141894901 78.498 0.43809 78.551 78.368 78.806 0.052452 24 17 2 0 0 0 0.04925 1 43365 43365 58.679 0 1 2377700 48572 1576;528 32819 33569 56563 56563 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7932739257812 2 575.792589 1149.57063 0.75597 0.00043528 0.77169 0.00044434 1.5277 0.00087962 575.7926990351244 82.816 0.50488 76.641 76.405 76.91 -6.1757 65 28 3 0 0 0 0.1028 1 54409 54409 46.021 0 1 36913000 48573 1576;528 32819 33569 56564 56564 0.0018230589482755022 PYNPILGETF 10 Unmodified _PYNPILGETF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8;ENST00000548535.1_1_12:76779917-76783618:-|nuORF;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;ENSG00000021762|ENST00000263650|OSBPL5 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;ENST00000534491.5_1_11:3114755-3187956:-|nuORF nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7943115234375 2 575.792589 1149.57063 1.2497 0.00071957 0.66822 0.00038476 1.9179 0.0011043 575.7931881562948 86.382 0.49326 80.206 79.94 80.434 -6.1757 61 26 3 0 0 0 0.020813 3 56817 56817;56949;57078 74.929 0 1 37143000 48574 1576;528 32819 33569 56565;56566;56567 56565 0.0018230589482755022 PYNPLWAQL 9 Unmodified _PYNPLWAQL_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.2886962890625 2 551.290017 1100.56548 -0.18777 -0.00010351 0.24567 0.00013544 0.057909 3.1925E-05 551.2900315016889 85.123 0.39142 85.186 85.025 85.417 0.063179 34 15 3 0 0 0 0.0067112 2 47071 47071;47201 112.59 72.636 1 29566000 48575 740;10543 32820 33570 56568;56569 56568 0.019220468228922982 PYNPLWAQL 9 Unmodified _PYNPLWAQL_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1 nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2900390625 2 551.290017 1100.56548 0.58206 0.00032088 0.29041 0.0001601 0.87246 0.00048098 551.2901088384165 93.583 0.90511 87.407 87.027 87.932 -6.1757 171 58 4 0 0 0 0.0083087 4 61802 61802;61930;62066;62201 97.075 56.626 1 79089000 48576 740;10543 32820 33570 56570;56571;56572;56573 56570 0.019220468228922982 PYNQQHLYF 9 Unmodified _PYNQQHLYF_ 0 0 0 ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3 ENST00000414624.6_1_11:61645294-61658904:-|nuORF ENST00000414624.6_1_11:61645294-61658904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2832641601562 2 605.288005 1208.56146 0.36195 0.00021909 -1.2394 -0.0007502 -0.87746 -0.00053112 605.2870692223141 48.527 0.19818 48.155 47.983 48.181 -0.37172 14 9 2 0 0 0 0.023481 1 26019 26019 67.344 44.195 1 3877700 48577 10565 32821 33571 56574 56574 -0.03448042670834184 PYNQQHLYF 9 Unmodified _PYNQQHLYF_ 0 0 0 ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3 ENST00000414624.6_1_11:61645294-61658904:-|nuORF ENST00000414624.6_1_11:61645294-61658904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.2835083007812 2 605.288005 1208.56146 0.38474 0.00023288 -3.0156 -0.0018253 -2.6309 -0.0015925 605.2856361853175 48.17 0.21671 48.131 48.007 48.224 -0.038647 17 10 2 0 0 0 0.10247 1 25987 25987 44.407 33.583 1 1527600 48578 10565 32821 33571 56575 56575 -0.03448042670834184 PYNRSLRERE 10 Unmodified _PYNRSLRERE_ 0 0 0 REV__ENSG00000173838|ENST00000311269|MARCHF10 REV__ENSG00000173838|ENST00000311269|MARCHF10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.8409423828125 2 660.344375 1318.6742 -0.79357 -0.00052403 -0.3797 -0.00025073 -1.1733 -0.00077476 660.3432272864414 27.637 0.12528 27.637 27.596 27.721 0 6 5 2 0 0 0 0.23862 1 14272 14272 3.9444 0 1 458430 + 48579 22754 32822 33572 56576 56576 0.027606060552443523 PYNSMYLRKM 10 Unmodified _PYNSMYLRKM_ 0 0 0 REV__ENST00000397033.6_1_2:182387000-182387063:+|nuORF REV__ENST00000397033.6_1_2:182387000-182387063:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8820495605469 3 434.882626 1301.62605 NaN NaN NaN NaN NaN NaN NaN 84.126 1 84.126 83.626 84.626 0 0 0 0 0.9997 1 46643 46643 0.69767 0 1 + 48580 26523 32823 33573 56577 56577 -0.01269927180715058 PYPASPLLGR 10 Unmodified _PYPASPLLGR_ 0 0 0 ENSG00000170561|ENST00000302057|IRX2 ENSG00000170561|ENST00000302057|IRX2 ENSG00000170561|ENST00000302057|IRX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2146301269531 3 357.537953 1069.59203 0.54945 0.00019645 0.027564 9.8554E-06 0.57702 0.0002063 357.87233272960225 49.482 0.24068 49.433 49.21 49.45 -0.048828 18 11 2 0 0 0 0.23926 1 26649 26649 1.5923 0.52082 1 1772200 48581 8004 32824 33574 56578 56578 0.06001735714244205 PYPCTGYRKAF 11 Unmodified _PYPCTGYRKAF_ 0 0 0 ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112 ENSG00000062370|ENST00000354340|ZNF112 ENSG00000062370|ENST00000354340|ZNF112 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 43.386 1 43.386 42.886 43.886 0 0 0 0 0.9385 1 23561 23561 1.4551 0.24029 1 48582 849 32825 33575 56579 56579 -0.016068539630396117 PYPDLPSRF 9 Unmodified _PYPDLPSRF_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2789306640625 2 546.279649 1090.54475 0.17002 9.2876E-05 -1.7586 -0.00096066 -1.5885 -0.00086779 546.2797148660943 55.222 0.25429 54.744 54.607 54.861 -0.47798 16 11 2 0 0 0 0.10247 1 29953 29953 32.786 5.902 1 1373100 48583 10560 32826 33576 56580 56580 0.003094564432331026 PYPFTHHWQF 10 Unmodified _PYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.8802490234375 3 453.88049 1358.61964 1.0535 0.00047818 -0.49958 -0.00022675 0.55396 0.00025143 453.8801914524966 58.207 0.27795 58.147 58.016 58.294 -0.060719 53 13 5 0 0 0 0.11755 2 31665 31665;31765 37.075 32.359 1 50393000 48584 6477 32827 33577 56581;56582 56581 -0.04532361025553655 PYPFTHHWQF 10 Unmodified _PYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.3170776367188 2 680.317097 1358.61964 0.92243 0.00062755 -0.82391 -0.00056052 0.098522 6.7026E-05 680.316510903733 58.206 0.15737 58.145 58.077 58.235 -0.060719 13 7 3 0 0 0 0.20962 1 31707 31707 32.786 23.403 1 3589500 48585 6477 32827 33577 56583 56583 -0.04532361025553655 PYPFTHHWQF 10 Unmodified _PYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2152099609375 3 453.88049 1358.61964 1.3236 0.00060074 -0.12314 -5.5889E-05 1.2004 0.00054485 453.88043164341804 86.659 0.84917 80.483 79.957 80.806 -6.1757 117 45 4 0 0 0 0.024115 4 57092 56840;56972;57092;57209 53.317 47.533 1 42466000 48586 6477 32827 33577 56584;56585;56586;56587 56586 -0.04532361025553655 PYPFTHHWQF 10 Unmodified _PYPFTHHWQF_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MSMS AL20221201_MKP_PDAC_01 4 680.3163452148438 2 680.317097 1358.61964 NaN NaN NaN NaN NaN NaN NaN 86.575 1 80.399 79.899 80.899 -6.1757 0 0 0 0.0020861 1 57075 57075 103.42 80.683 1 48587 6477 32827 33577 56588 56588 -0.04532361025553655 PYPLGSRD 8 Unmodified _PYPLGSRD_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 905.3744506835938 1 904.452308 903.445031 0.52067 0.00047092 0.16789 0.00015185 0.68856 0.00062277 904.457133466721 78.009 0.12186 78.062 77.964 78.086 0.052452 5 4 2 0 0 0 0.80676 1 43066 43066 2.5775 0 1 984670 48588 9843 32828 33578 56589 56589 -0.010553611707109667 PYPLLVVNI 9 Unmodified _PYPLLVVNI_ 0 0 0 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 ENSG00000120137|ENST00000239231|PANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.815185546875 2 514.312961 1026.61137 1.0939 0.00056262 1.1002 0.00056587 2.1942 0.0011285 514.8139281495237 54.343 0.2586 48.477 48.383 48.641 -5.8653 36 15 3 0 0 0 0.10925 1 34448 34448 32.117 7.4431 1 16274000 48589 3498 32829 33579 56590 56590 0.0991269200512761 PYPMGAGR 8 Unmodified _PYPMGAGR_ 0 0 0 REV__nc|ENSG00000005339|Q92793-2|CREBBP REV__nc|ENSG00000005339|Q92793-2|CREBBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7073669433594 2 424.707805 847.401058 NaN NaN NaN NaN NaN NaN NaN 45.355 1 45.355 44.855 45.855 0 0 0 0 0.9706 1 24717 24717 6.3541 3.4649 1 + 48590 16966 32830 33580 56591 56591 -0.02874668868696517 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7584838867188 2 520.758018 1039.50148 0.4823 0.00025116 1.3368 0.00069613 1.8191 0.00094729 520.7581606473103 58.262 1.1589 58.262 57.845 59.004 0 120 48 4 0 0 0 0.010877 5 32403 32289;32403;32506;32617;32727 77.984 49.811 1 10970000 48591 4413 32831 33581 56592;56593;56594;56595;56596 56593 -0.016687333340541954 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7586059570312 2 520.758018 1039.50148 0.20279 0.0001056 0.5852 0.00030475 0.78799 0.00041035 520.7581814978953 58.904 1.2899 58.414 57.963 59.253 -0.49079 160 61 4 0 0 0 0.0086179 5 32047 31945;32047;32154;32260;32368 89.427 61.254 1 19289000 48592 4413 32831 33581 56597;56598;56599;56600;56601 56598 -0.016687333340541954 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.75830078125 2 520.758018 1039.50148 0.54132 0.0002819 0.30576 0.00015923 0.84708 0.00044112 520.7582305478829 58.545 0.68528 58.484 58.195 58.88 -0.060722 51 34 2 0 0 0 0.03327 1 31896 31896 53.576 34.137 1 1930800 48593 4413 32831 33581 56602 56602 -0.016687333340541954 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7581787109375 2 520.758018 1039.50148 0.45712 0.00023805 0.16769 8.7325E-05 0.62481 0.00032537 520.7579568869933 65.533 1.7131 59.357 58.715 60.428 -6.1757 256 97 4 0 0 0 0.0083087 6 42453 42329;42453;42581;42719;42856;43020 101.72 73.549 1 174270000 48594 4413 32831 33581 56603;56604;56605;56606;56607;56608 56604 -0.016687333340541954 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.758018 1039.50148 0.46797 0.0002437 1.3095 0.00068191 1.7774 0.00092561 520.758919133014 59.071 0.21375 59.071 59.004 59.217 0 -0.072124 0.0011361 NaN 101.72 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 511290 48595 4413 32831 33581 -0.016687333340541954 PYPPPPPEF 9 Unmodified _PYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.758018 1039.50148 0.37126 0.00019334 0.024792 1.2911E-05 0.39606 0.00020625 520.7576883860352 59.062 0.18365 59.001 58.922 59.105 -0.060719 -0.14214 -0.00020191 NaN 101.72 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 797480 48596 4413 32831 33581 -0.016687333340541954 PYPQYFTQL 9 Unmodified _PYPQYFTQL_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7863159179688 2 578.787307 1155.56006 0.67206 0.00038898 -0.51854 -0.00030012 0.15353 8.8858E-05 578.7869167138709 72.585 0.41786 72.109 71.9 72.318 -0.47609 62 19 5 0 0 0 0.10247 2 39666 39666;39762 44.407 33.583 1 16811000 48597 2107 32832 33582 56609;56610 56609 -0.01149676759587237 PYPQYFTQL 9 Unmodified _PYPQYFTQL_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7864990234375 2 578.787307 1155.56006 0.69612 0.0004029 -0.65875 -0.00038128 0.037364 2.1626E-05 578.786744697208 72.065 0.44481 72.104 71.85 72.295 0.039032 65 21 4 0 0 0 0.13231 2 39602 39602;39701 39.957 21.811 1 29132000 48598 2107 32832 33582 56611;56612 56611 -0.01149676759587237 PYPQYLAVI 9 Unmodified _PYPQYLAVI_ 0 0 0 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2953491210938 2 532.294768 1062.57498 0.58073 0.00030912 -0.79983 -0.00042575 -0.2191 -0.00011663 532.2944494428318 82.24 0.65421 81.745 81.528 82.182 -0.4952 79 26 5 0 0 0 0.052168 1 44981 44981 44.407 26.272 1 8247000 48599 861 32833 33583 56613 56613 0.04619815108412695 PYPQYLAVI 9 Unmodified _PYPQYLAVI_ 0 0 0 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.29541015625 2 532.294768 1062.57498 1.7064 0.00090832 -0.60641 -0.00032279 1.1 0.00058553 532.2946312789354 81.614 0.57102 81.674 81.507 82.078 0.059929 54 22 4 0 0 0 0.019979 2 45132 45132;45242 63.563 40.414 1 9487300 48600 861 32833 33583 56614;56615 56614 0.04619815108412695 PYPQYLAVI 9 Unmodified _PYPQYLAVI_ 0 0 0 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 ENSG00000063322|ENST00000315588|MED29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2948608398438 2 532.294768 1062.57498 1.168 0.00062175 1.8313 0.00097477 2.9993 0.0015965 532.2962239385992 89.215 0.6693 83.039 82.569 83.239 -6.1757 50 20 3 0 0 0 0.095405 2 58809 58809;58933 34.102 12.356 1 38339000 48601 861 32833 33583 56616;56617 56616 0.04619815108412695 PYPRIHFPLV 10 Unmodified _PYPRIHFPLV_ 0 0 0 ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF ENSG00000183785|ENST00000330423|TUBA8 ENSG00000183785|ENST00000330423|TUBA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5729675292969 3 413.572998 1237.69716 0.2858 0.0001182 0.67409 0.00027879 0.95989 0.00039699 413.90763563278307 93.165 0.2774 86.989 86.806 87.084 -6.1757 33 19 2 0 0 0 0.40046 1 61573 61573 21.59 5.0243 1 38651000 48602 9198 32834 33584 56618 56618 0.08782276910642395 PYPRINLKF 9 Unmodified _PYPRINLKF_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2257690429688 3 383.225598 1146.65496 0.69159 0.00026503 -0.16178 -6.1998E-05 0.52981 0.00020304 383.2255521048112 57.176 0.39796 57.11 56.841 57.239 -0.066032 46 19 3 0 0 0 0.21643 2 31032 31032;31131 21.537 9.2963 1 11803000 48603 3218 32835 33585 56619;56620 56619 0.08750301502254842 PYPRINLKF 9 Unmodified _PYPRINLKF_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2267150878906 3 383.225598 1146.65496 0.95719 0.00036682 0.12061 4.622E-05 1.0778 0.00041304 383.22552545399924 78.574 1.0068 72.399 72.126 73.132 -6.1757 109 59 3 0 0 0 0.091924 3 51375 51375;51647;51788 34.932 18.783 1 32050000 48604 3218 32835 33585 56621;56622;56623 56621 0.08750301502254842 PYPRPIHL 8 Unmodified _PYPRPIHL_ 0 0 0 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 ENSG00000102897|ENST00000567954|LYRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7872924804688 2 496.787444 991.560336 0.99132 0.00049248 -1.5873 -0.00078853 -0.59594 -0.00029605 496.7866572992898 49.582 0.41292 49.533 49.35 49.763 -0.048824 37 20 2 0 0 0 0.24071 1 26750 26750 63.563 31.446 1 4483600 48605 2077 32836 33586 56624 56624 0.06421787750934982 PYQCDCPPGW 10 Unmodified _PYQCDCPPGW_ 0 0 0 ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-3|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1932983398438 3 389.152893 1164.43685 -0.61265 -0.00023841 -1.5431 -0.00060051 -2.1558 -0.00083892 389.15189056091543 34.7 0.1368 34.7 34.656 34.793 0 10 6 2 0 0 0 0.2399 1 18347 18347 1.9064 0.71303 1 1355900 48606 7297 32837 33587 56625 56625 -0.1387899947403639 PYQEIKNVI 9 Unmodified _PYQEIKNVI_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.309326171875 2 552.308406 1102.60226 0.57688 0.00031861 1.1355 0.00062715 1.7124 0.00094576 552.309221456547 51.667 0.1268 46.018 45.945 46.071 -5.649 10 7 2 0 0 0 0.018061 1 32560 32560 65.474 36.392 1 21572000 48607 4334 32838 33588 56626 56626 0.05506298648788288 PYQLARQI 8 Unmodified _PYQLARQI_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2;ENST00000479372.1_1_1:150459926-150460531:+|nuORF;ENST00000369053.3_1_1:150459926-150461710:+|nuORF nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7829284667969 2 494.782359 987.550165 -0.34756 -0.00017197 0.69188 0.00034233 0.34432 0.00017037 494.78270125493384 20.188 0.11248 20.188 20.143 20.255 0 11 6 2 0 0 0 0.74163 1 10174 10174 13.508 2.684 1 312560 48608 5500 32839 33589 56627 56627 0.05589180025708629 PYQLPFHNF 9 Unmodified _PYQLPFHNF_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3195190429688 2 581.787641 1161.56073 0.98724 0.00057436 0.88442 0.00051455 1.8717 0.0010889 581.7876248647933 68.306 0.35089 68.331 68.148 68.499 0.025154 38 17 3 0 0 0 0.12183 1 37480 37480 34.102 21.571 1 3381300 48609 5275 32840 33590 56628 56628 -0.013588373198672343 PYQLSAYAMA 10 Unmodified _PYQLSAYAMA_ 0 0 0 nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9 nc|ENSG00000144550|Q8IYJ1-2|CPNE9 nc|ENSG00000144550|Q8IYJ1-2|CPNE9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7639770507812 2 557.765517 1113.51648 0.92729 0.00051721 1.7994 0.0010037 2.7267 0.0015209 557.7636317877701 74.88 0.56708 74.403 74.11 74.677 -0.47643 62 23 4 0 0 0 0.44373 2 40901 40901;41006 19.257 7.6167 1 6851300 48610 5617 32841 33591 56629;56630 56629 -0.03573609528348243 PYQLSAYAMA 10 Unmodified _PYQLSAYAMA_ 0 0 0 nc|ENSG00000144550|Q8IYJ1-2|CPNE9;ENSG00000144550|ENST00000383832|CPNE9 nc|ENSG00000144550|Q8IYJ1-2|CPNE9 nc|ENSG00000144550|Q8IYJ1-2|CPNE9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7644653320312 2 557.765517 1113.51648 0.58498 0.00032628 -1.6474 -0.00091886 -1.0624 -0.00059258 557.7643151367052 74.31 0.31772 74.354 74.182 74.499 0.043976 41 13 5 0 0 0 0.44373 1 40930 40930 19.257 6.7254 1 9722800 48611 5617 32841 33591 56631 56631 -0.03573609528348243 PYQNGFTFHTW 11 Unmodified _PYQNGFTFHTW_ 0 0 0 nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA nc|ENSG00000198589|P50851-2|LRBA nc|ENSG00000198589|P50851-2|LRBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.3179931640625 2 699.317294 1396.62004 1.0945 0.0007654 -1.6608 -0.0011614 -0.56634 -0.00039605 699.3163886740059 64.087 0.27422 64.076 63.919 64.194 -0.010529 28 13 3 0 0 0 3.888999999999999E-52 1 35086 35086 192.32 157.92 1 5770800 48612 10109 32842 33592 56632 56632 -0.06240986096349843 PYQPAPGSPPY 11 Unmodified _PYQPAPGSPPY_ 0 0 0 REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF REV__ENST00000464117.1_1_1:201857869-201860971:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8583374023438 3 391.857351 1172.55022 1.2284 0.00048137 1.007 0.00039459 2.2354 0.00087596 391.8578999332784 42.495 0.39388 37.811 37.575 37.969 -4.6846 62 25 3 0 0 0 0.67371 1 25656 25656 3.0723 0.077021 1 50638000 + 48613 24095 32843 33593 56633 56633 -0.02914864764943559 PYQRELEAI 9 Unmodified _PYQRELEAI_ 0 0 0 REV__ENSG00000155816|ENST00000319653|FMN2 REV__ENSG00000155816|ENST00000319653|FMN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7960815429688 2 559.795663 1117.57677 0.45462 0.00025449 -0.9198 -0.0005149 -0.46518 -0.00026041 559.7949100189662 61.416 0.66319 61.416 60.999 61.663 0 66 29 3 0 0 0 0.46501 1 34097 34097 9.3831 1.2276 1 1961400 + 48614 21289 32844 33594 56634 56634 0.022688241263722375 PYQRYCHQ 8 Unmodified _PYQRYCHQ_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C REV__ENSG00000056277|ENST00000370978|ZNF280C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3005981445312 2 547.74545 1093.47635 0.29796 0.00016321 -0.16752 -9.1757E-05 0.13044 7.1449E-05 547.745185192743 94.92 0.29563 94.551 94.402 94.698 -0.36814 37 14 3 0 0 0 8.7369 1 51874 51874 5.7604 0.52976 1 1446700 + 48615 17296 32845 33595 56635 56635 -0.0666511140827879 PYQSQIAVF 9 Unmodified _PYQSQIAVF_ 0 0 0 nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17 nc|ENSG00000152942|O75943-3|RAD17 nc|ENSG00000152942|O75943-3|RAD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7745971679688 2 526.7742 1051.53385 0.57113 0.00030086 0.069977 3.6862E-05 0.64111 0.00033772 526.7741517975473 64.206 0.37538 63.721 63.532 63.908 -0.48512 34 17 2 0 0 0 0.015445 1 35036 35036 68.081 35.775 1 7032800 48616 6221 32846 33596 56636 56636 0.010140540689462796 PYQSQIAVF 9 Unmodified _PYQSQIAVF_ 0 0 0 nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17 nc|ENSG00000152942|O75943-3|RAD17 nc|ENSG00000152942|O75943-3|RAD17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.403442382812 1 1052.54112 1051.53385 0.54873 0.00057756 3.529 0.0037144 4.0777 0.0042919 1052.5448443959608 64.253 0.10387 63.768 63.675 63.779 -0.48512 7 4 2 0 0 0 0.11314 1 35005 35005 38.176 21.063 1 898570 48617 6221 32846 33596 56637 56637 0.010140540689462796 PYQSQIAVF 9 Unmodified _PYQSQIAVF_ 0 0 0 nc|ENSG00000152942|O75943-3|RAD17;nc|ENSG00000152942|O75943-4|RAD17;ENSG00000152942|ENST00000354868|RAD17;nc|ENSG00000152942|O75943|RAD17 nc|ENSG00000152942|O75943-3|RAD17 nc|ENSG00000152942|O75943-3|RAD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.77490234375 2 526.7742 1051.53385 0.85932 0.00045267 -0.024844 -1.3087E-05 0.83447 0.00043958 526.7739993377658 63.796 0.30879 63.786 63.629 63.938 -0.010532 23 14 2 0 0 0 0.015445 1 34929 34929 68.081 35.775 1 3360800 48618 6221 32846 33596 56638 56638 0.010140540689462796 PYRAKWRRFQI 11 Unmodified _PYRAKWRRFQI_ 0 0 0 ENST00000306052.10_1_1:53711551-53711623:-|nuORF ENST00000306052.10_1_1:53711551-53711623:-|nuORF ENST00000306052.10_1_1:53711551-53711623:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.6253051757812 3 507.624755 1519.85244 1.0383 0.00052705 -1.0859 -0.00055124 -0.047643 -2.4185E-05 507.62431994268223 89.722 0.35901 83.546 83.362 83.721 -6.1757 32 19 2 0 0 0 0.71503 1 59280 59280 2.8433 0.21205 1 11757000 48619 11620 32847 33597 56639 56639 0.1133032076490963 PYRDYNYSL 9 Unmodified _PYRDYNYSL_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2810668945312 2 595.77747 1189.54039 1.1194 0.00066691 1.669 0.00099436 2.7884 0.0016613 596.2797013715012 46.601 0.36356 46.567 46.41 46.774 -0.033417 34 17 3 0 0 0 0.48152 1 25116 25116 8.5933 1.304 1 3029400 48620 2944 32848 33598 56640 56640 -0.046800527703453554 PYRHRNTV 8 Unmodified _PYRHRNTV_ 0 0 0 nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4 nc|ENSG00000178568|Q15303-4|ERBB4 nc|ENSG00000178568|Q15303-4|ERBB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.779052734375 2 521.780682 1041.54681 0.64408 0.00033607 0.25677 0.00013398 0.90086 0.00047005 521.7805688549123 46.179 0.44409 41.224 40.999 41.443 -4.9549 83 27 4 0 0 0 0.75262 1 28406 28406 12.532 2.3482 1 147020000 48621 8760 32849 33599 56641 56641 0.02769929971691454 PYRKDNYF 8 Unmodified _PYRKDNYF_ 0 0 0 REV__ENSG00000164975|ENST00000380821|SNAPC3 REV__ENSG00000164975|ENST00000380821|SNAPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.77099609375 2 551.769448 1101.52434 0.76529 0.00042226 -0.065019 -3.5875E-05 0.70027 0.00038639 551.7693945153982 46.183 0.66952 46.149 45.878 46.548 -0.033417 55 31 2 0 0 0 0.80044 1 24748 24748 6.3541 1.1234 1 4356700 + 48622 21969 32850 33600 56642 56642 -0.022357142165901678 PYRLIFEKF 9 Unmodified _PYRLIFEKF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8975219726562 3 404.89737 1211.67028 0.059715 2.4178E-05 0.42592 0.00017245 0.48563 0.00019663 404.8975217149007 61.703 0.41175 61.67 61.476 61.888 -0.032787 69 20 5 0 0 0 0.025842 2 33632 33632;33735 46.022 25.39 1 68300000 48623 10766 32851 33601 56643;56644 56643 0.07291168299434503 PYRLIFEKF 9 Unmodified _PYRLIFEKF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8977661132812 3 404.89737 1211.67028 1.2689 0.00051377 -0.26054 -0.00010549 1.0084 0.00040828 404.89726060469053 89.627 0.59015 83.451 83.112 83.702 -6.1757 96 32 4 0 0 0 0.021948 3 59156 59025;59156;59276 57.108 38.386 1 91230000 48624 10766 32851 33601 56645;56646;56647 56646 0.07291168299434503 PYRLIFEKF 9 Unmodified _PYRLIFEKF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 606.843505859375 2 606.842416 1211.67028 NaN NaN NaN NaN NaN NaN NaN 89.539 1 83.363 82.863 83.863 -6.1757 0 0 0 0.011986 1 59110 59110 89.401 39.468 1 48625 10766 32851 33601 56648 56648 0.07291168299434503 PYRYDLTF 8 Unmodified _PYRYDLTF_ 0 0 0 REV__nc|ENSG00000112041|O00294-2|TULP1 REV__nc|ENSG00000112041|O00294-2|TULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7664794921875 2 537.766374 1073.5182 0.56571 0.00030422 0.47045 0.00025299 1.0362 0.00055722 537.7674502040811 64.275 0.2313 63.79 63.613 63.844 -0.48512 14 10 2 0 0 0 0.75262 1 35075 35075 12.532 3.1841 1 724380 + 48626 18782 32852 33602 56649 56649 -0.015622324481228134 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.9435729980469 4 395.942762 1579.74194 0.065644 2.5991E-05 0.16192 6.4113E-05 0.22757 9.0104E-05 395.9429254678586 38.064 0.33784 38.064 37.846 38.184 0 53 16 4 0 0 0 0.73992 2 20245 20245;20355 0.50596 0.41111 1 5264200 + 48627 22489 32853 33603 56650;56651 56650 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7650146484375 3 527.587924 1579.74194 0.45818 0.00024173 0.088981 4.6945E-05 0.54716 0.00028868 527.9221545823145 38.059 0.31886 38.059 37.846 38.165 0 26 15 2 0 0 0 0.30604 1 20253 20253 0.094841 0 1 3008500 + 48628 22489 32853 33603 56652 56652 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.9432983398438 4 395.942762 1579.74194 0.034313 1.3586E-05 0.35402 0.00014017 0.38833 0.00015376 395.9429085532149 38.475 0.55143 38.188 37.847 38.398 -0.28687 106 25 5 0 0 0 0.73992 2 20116 20116;20316 0.50596 0.41111 1 62000000 + 48629 22489 32853 33603 56653;56654 56653 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.588134765625 3 527.587924 1579.74194 -0.073909 -3.8994E-05 0.66342 0.00035001 0.58951 0.00031102 527.5882359190376 38.47 0.6077 38.183 37.847 38.454 -0.28687 92 28 5 0 0 0 0.73992 1 20244 20244 0.50596 0.051438 1 29940000 + 48630 22489 32853 33603 56655 56655 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.9425659179688 4 395.942762 1579.74194 -0.11964 -4.737E-05 0.45376 0.00017966 0.33412 0.00013229 396.19369035439547 38.05 0.51805 38.067 37.773 38.291 0.01704 75 23 4 0 0 0 0.73992 2 20155 20155;20255 0.50596 0.051438 1 9812600 + 48631 22489 32853 33603 56656;56657 56656 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9431762695312 4 395.942762 1579.74194 1.0024 0.00039688 0.15877 6.2864E-05 1.1611 0.00045974 395.9428125537923 42.93 0.57512 38.245 37.982 38.557 -4.6846 151 37 5 0 0 0 0.73992 2 25984 25984;26113 0.50596 0.41111 1 215790000 + 48632 22489 32853 33603 56658;56659 56658 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.5883178710938 3 527.587924 1579.74194 0.85747 0.00045239 -0.22435 -0.00011836 0.63313 0.00033403 527.5878746937555 42.925 0.5449 38.24 37.969 38.514 -4.6846 134 35 5 0 0 0 0.73992 1 26068 26068 0.50596 0.051438 1 160560000 + 48633 22489 32853 33603 56660 56660 -0.02473988804649707 PYRYYYKDQER 11 Unmodified _PYRYYYKDQER_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 527.587924 1579.74194 0.0010316 5.4425E-07 0.50033 0.00026397 0.50136 0.00026451 527.588092892792 38.066 0.44931 38.083 37.816 38.265 0.01704 -0.058497 0.00048543 NaN 0.094841 59 20 4 NaN NaN NaN NaN 0 NaN NaN 0 7838500 + 48634 22489 32853 33603 -0.02473988804649707 PYSAPRPGTVF 11 Unmodified _PYSAPRPGTVF_ 0 0 0 ENST00000322177.5_1_15:75247781-75248108:-|nuORF ENST00000322177.5_1_15:75247781-75248108:-|nuORF ENST00000322177.5_1_15:75247781-75248108:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8760070800781 3 397.876746 1190.60841 NaN NaN NaN NaN NaN NaN NaN 32.648 1 32.648 32.148 33.148 0 0 0 0 0.93224 1 17073 17073 2.6312 0.88896 1 48635 11782 32854 33604 56661 56661 0.02072816880308892 PYSDKLFEMVL 11 Oxidation (M) _PYSDKLFEM(Oxidation (M))VL_ PYSDKLFEM(1)VL PYSDKLFEM(41)VL 0 0 1 nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.3395385742188 2 679.339046 1356.66354 0.31912 0.00021679 -0.70905 -0.00048168 -0.38993 -0.0002649 679.3386394731599 72.835 0.18567 72.877 72.782 72.968 0.041725 13 8 2 0 0 0 0.10976 1 40129 40129 41.347 31.964 1 2671700 48636 4387 32855 33605 56662 56662 795 -0.0005255743410543801 PYSDKLFEMVL 11 Unmodified _PYSDKLFEMVL_ 0 0 0 nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000486633.1_1_2:86400704-86422514:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3411865234375 2 671.341589 1340.66863 0.006662 4.4725E-06 0.64519 0.00043314 0.65185 0.00043762 671.3420103285573 99.022 0.11631 92.846 92.778 92.894 -6.1757 15 6 3 0 0 0 0.10354 1 65825 65825 51.415 31.001 1 68796000 48637 4387 32855 33606 56663 56663 0.011917464285261303 PYSDSTAKL 9 Unmodified _PYSDSTAKL_ 0 0 0 nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;ENST00000602040.5_1_19:50354666-50357992:+|nuORF nc|ENSG00000104960|Q86YD1-2|PTOV1 nc|ENSG00000104960|Q86YD1-2|PTOV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2484741210938 2 491.248015 980.481476 -0.35243 -0.00017313 0.70486 0.00034626 0.35243 0.00017313 491.2483243077864 25.549 0.26858 25.549 25.406 25.674 0 35 12 4 0 0 0 0.023481 2 13156 13061;13156 60.074 36.053 1 6559000 48638 2264 32856 33607 56664;56665 56665 -0.009545290646656213 PYSEKMTVLF 10 Oxidation (M) _PYSEKM(Oxidation (M))TVLF_ PYSEKM(1)TVLF PYSEKM(48)TVLF 0 0 1 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.8067626953125 2 615.807382 1229.60021 0.25054 0.00015428 -2.0776 -0.0012794 -1.827 -0.0011251 615.806839071981 51.745 0.43512 51.312 51.115 51.55 -0.43367 55 22 3 0 0 0 0.095786 1 27970 27970 47.594 29.448 1 3355600 48639 10186 32857 33608 56666 56666 1658 -0.005404981513265739 PYSEYFEYF 9 Unmodified _PYSEYFEYF_ 0 0 0 ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3;ENST00000491581.5_1_5:141004689-141007494:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF ENST00000469550.6_1_5:141001037-141014565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.7608642578125 2 622.760955 1243.50736 NaN NaN NaN NaN NaN NaN NaN 84.102 1 83.603 83.103 84.103 -0.49961 0 0 0 0.71962 1 46028 46028 13.508 9.5635 1 48640 8130 32858 33609 56667 56667 -0.10465679613048451 PYSGGLCL 8 Unmodified _PYSGGLCL_ 0 0 0 ENSG00000120709|ENST00000239906|FAM53C ENSG00000120709|ENST00000239906|FAM53C ENSG00000120709|ENST00000239906|FAM53C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.3838500976562 1 809.386202 808.378925 0.05032 4.0728E-05 -0.29849 -0.0002416 -0.24817 -0.00020087 809.3827184044327 59.002 0.19843 59.002 58.924 59.123 0 14 8 2 0 0 0 0.65867 1 32874 32874 20.871 10.688 1 614110 48641 3535 32859 33610 56668 56668 -0.032928933371408675 PYSGSPANF 9 Unmodified _PYSGSPANF_ 0 0 0 nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF nc|ENSG00000176974|P34896-3|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 939.4210815429688 1 939.420673 938.413397 0.39765 0.00037356 0.67521 0.00063431 1.0729 0.0010079 939.4215077604794 38.844 0.18278 38.844 38.77 38.953 0 12 7 2 0 0 0 0.031062 1 20778 20778 54.774 26.287 1 979590 48642 8640 32860 33611 56669 56669 -0.05827353924678391 PYSGSPANF 9 Unmodified _PYSGSPANF_ 0 0 0 nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1;ENST00000579558.5_1_17:18243959-18259295:-|nuORF nc|ENSG00000176974|P34896-3|SHMT1 nc|ENSG00000176974|P34896-3|SHMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2139282226562 2 470.213975 938.413397 0.44969 0.00021145 0.75714 0.00035602 1.2068 0.00056747 470.21448368131377 44.946 0.3617 40.094 39.918 40.28 -4.852 33 23 2 0 0 0 0.010877 1 27494 27494 77.984 58.545 1 12149000 48643 8640 32860 33611 56670 56670 -0.05827353924678391 PYSINMNVF 9 Oxidation (M) _PYSINM(Oxidation (M))NVF_ PYSINM(1)NVF PYSINM(82)NVF 0 0 1 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.75634765625 2 550.757692 1099.50083 -0.1156 -6.3667E-05 -0.95396 -0.0005254 -1.0696 -0.00058907 550.7571492052867 60.735 0.42459 60.245 60.05 60.475 -0.48932 53 18 4 0 0 0 0.0095811 2 33146 33041;33146 81.613 53.126 1 11736000 48644 2053 32861 33612 56671;56672 56672 352 -0.04493896045414658 PYSINMNVF 9 Oxidation (M) _PYSINM(Oxidation (M))NVF_ PYSINM(1)NVF PYSINM(82)NVF 0 0 1 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.2587890625 2 550.757692 1099.50083 0.33455 0.00018426 -1.1558 -0.00063654 -0.82121 -0.00045229 550.7571550525313 60.366 0.3415 60.322 60.192 60.533 -0.04351 27 16 2 0 0 0 0.0095811 2 32965 32882;32965 81.613 45.569 1 7610300 48645 2053 32861 33612 56673;56674 56674 352 -0.04493896045414658 PYSINMNVF 9 Unmodified _PYSINMNVF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7607421875 2 542.760235 1083.50592 0.25921 0.00014069 0.59438 0.0003226 0.85358 0.00046329 542.7601603490139 78.005 0.28712 78.057 77.915 78.202 0.052452 26 11 3 0 0 0 0.0090948 1 43058 43058 85.272 47.298 1 3253200 48646 2053 32861 33613 56675 56675 -0.03249592182805827 PYSINMNVF 9 Unmodified _PYSINMNVF_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;KLF5|p.Q154Rfs*5|1|0.35|ENSG00000102554|chr13:73062057-73062057|C/-|frameshift_variant;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7621459960938 2 542.760235 1083.50592 0.52783 0.00028649 2.4883 0.0013506 3.0161 0.001637 542.7615093557808 85.698 0.43256 79.522 79.327 79.76 -6.1757 43 24 2 0 0 0 0.0088975 2 56413 56413;56552 104.8 68.755 1 39002000 48647 2053 32861 33613 56676;56677 56676 -0.03249592182805827 PYSKDSPF 8 Unmodified _PYSKDSPF_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.4483642578125 1 940.441074 939.433798 -0.33921 -0.00031901 -0.039533 -3.7178E-05 -0.37874 -0.00035618 940.4408225431567 56.347 0.67802 56.347 56.007 56.685 0 103 30 4 0 0 0 0.80232 1 31225 31225 5.2307 2.3415 1 53446000 48648 1099 32862 33614 56678 56678 -0.03834183264859803 PYSKETKIM 9 Unmodified _PYSKETKIM_ 0 0 0 REV__ENSG00000115155|ENST00000272371|OTOF REV__ENSG00000115155|ENST00000272371|OTOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7886962890625 2 548.788992 1095.56343 NaN NaN NaN NaN NaN NaN NaN 96.423 1 96.118 95.618 96.618 -0.30472 0 0 0 0.85798 1 52659 52659 0.52476 0 1 + 48649 18953 32863 33615 56679 56679 0.019472500227493583 PYSLIPTAF 9 Unmodified _PYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7727355957031 2 504.773668 1007.53278 0.008784 4.4339E-06 0.015141 7.6428E-06 0.023925 1.2077E-05 504.77380136166516 89.244 0.36737 88.74 88.519 88.886 -0.50423 24 13 2 0 0 0 0.052168 1 48787 48787 44.407 31.875 1 986140 48650 8124;9174 32864 33616 56680 56680 0.029318397000452023 PYSLIPTAF 9 Unmodified _PYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1009.727294921875 1 1008.54006 1007.53278 0.34511 0.00034805 -0.48338 -0.00048751 -0.13827 -0.00013945 1008.5399118244494 89.312 0.27059 88.811 88.642 88.913 -0.50171 16 11 2 0 0 0 0.2143 1 48831 48831 21.747 4.6338 1 592340 48651 8124;9174 32864 33616 56681 56681 0.029318397000452023 PYSLIPTAF 9 Unmodified _PYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2758483886719 2 504.773668 1007.53278 0.25585 0.00012915 -0.18479 -9.3279E-05 0.07106 3.5869E-05 504.7738598574096 88.668 0.21726 88.716 88.647 88.864 0.047852 12 8 2 0 0 0 0.0086629 1 49358 49358 101.72 74.838 1 13014000 48652 8124;9174 32864 33616 56682 56682 0.029318397000452023 PYSLIPTAF 9 Unmodified _PYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.77587890625 2 504.773668 1007.53278 0.93738 0.00047316 -0.068981 -3.482E-05 0.8684 0.00043834 504.77355741897156 98.485 0.43108 92.309 92.12 92.551 -6.1757 59 30 2 0 0 0 0.010877 2 65260 65260;65402 77.984 77.984 1 30378000 48653 8124;9174 32864 33616 56683;56684 56683 0.029318397000452023 PYSRPKQL 8 Unmodified _PYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.782470703125 2 494.782359 987.550165 -0.27282 -0.00013499 -0.3258 -0.0001612 -0.59862 -0.00029619 494.7822941270104 20.027 0.14622 20.055 19.988 20.135 0.028357 11 6 2 0 0 0 0.42686 1 10134 10134 41.84 9.0539 1 850050 48654 9177 32865 33617 56685 56685 0.05589180025708629 PYSRPKQL 8 Unmodified _PYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7821960449219 2 494.782359 987.550165 0.30471 0.00015076 1.0004 0.000495 1.3051 0.00064576 494.78240912433296 20.09 0.12838 20.098 20.022 20.15 0.0078487 7 5 2 0 0 0 0.76266 1 10257 10257 11.64 1.5664 1 334490 48655 9177 32865 33617 56686 56686 0.05589180025708629 PYSRPKQL 8 Unmodified _PYSRPKQL_ 0 0 0 nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF nc|ENSG00000183684|Q86V81|ALYREF nc|ENSG00000183684|Q86V81|ALYREF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7827758789062 2 494.782359 987.550165 0.58943 0.00029164 0.44436 0.00021986 1.0338 0.0005115 494.7826348695662 22.445 0.27322 19.667 19.519 19.792 -2.7784 36 14 3 0 0 0 0.078126 1 12041 12041 114.65 47.614 1 6634800 48656 9177 32865 33617 56687 56687 0.05589180025708629 PYSSIDQLL 9 Unmodified _PYSSIDQLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2752685546875 2 518.27149 1034.52843 0.66321 0.00034373 1.6825 0.00087197 2.3457 0.0012157 518.2723992151552 73.869 0.23093 73.869 73.738 73.969 0 17 9 2 0 0 0 0.2143 1 41123 41123 21.747 4.6601 1 737900 48657 583 32866 33618 56688 56688 0.012543304864948368 PYSSIDQLL 9 Unmodified _PYSSIDQLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2713012695312 2 518.27149 1034.52843 NaN NaN NaN NaN NaN NaN NaN 63.551 1 63.551 63.051 64.051 0 0 0 0 0.15618 1 35450 35450 36.044 11.37 1 48658 583 32866 33618 56689 56689 0.012543304864948368 PYSSIDQLL 9 Unmodified _PYSSIDQLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2726440429688 2 518.27149 1034.52843 0.63425 0.00032871 -0.085742 -4.4438E-05 0.54851 0.00028428 518.2715429001115 74.313 0.30789 73.837 73.667 73.974 -0.47588 22 12 2 0 0 0 0.010877 1 40659 40659 77.984 51.101 1 2608800 48659 583 32866 33618 56690 56690 0.012543304864948368 PYSSIDQLL 9 Unmodified _PYSSIDQLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2755126953125 2 518.27149 1034.52843 1.1459 0.0005939 3.0059 0.0015579 4.1518 0.0021518 518.2708686828678 81.655 0.43002 75.48 75.227 75.657 -6.1757 43 23 3 0 0 0 0.010877 1 53597 53597 77.984 49.497 1 15592000 48660 583 32866 33618 56691 56691 0.012543304864948368 PYSSQRQM 8 Unmodified _PYSSQRQM_ 0 0 0 ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7326049804688 2 498.732009 995.449465 -0.10548 -5.2606E-05 1.5782 0.00078708 1.4727 0.00073448 498.7325290677238 38.427 0.23639 38.14 38.003 38.239 -0.28687 21 10 3 0 0 0 0.63229 1 20201 20201 23.148 0 1 2294500 48661 15222 32867 33619 56692 56692 -0.04844220019447221 PYSSQRQM 8 Unmodified _PYSSQRQM_ 0 0 0 ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7330017089844 2 498.732009 995.449465 0.096922 4.8338E-05 1.3621 0.00067933 1.459 0.00072767 498.73284184589124 38.057 0.22771 38.074 37.942 38.17 0.01704 15 10 2 0 0 0 0.76266 1 20246 20246 11.64 0 1 1440000 48662 15222 32867 33619 56693 56693 -0.04844220019447221 PYSSQRQM 8 Unmodified _PYSSQRQM_ 0 0 0 ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7333679199219 2 498.732009 995.449465 1.351 0.00067377 -1.3922 -0.00069434 -0.041243 -2.0569E-05 498.7325759845045 41.953 0.42305 37.268 37 37.423 -4.6846 66 26 4 0 0 0 0.42423 1 25247 25247 42.095 0 1 22451000 48663 15222 32867 33619 56694 56694 -0.04844220019447221 PYSSQRQM 8 Unmodified _PYSSQRQM_ 0 0 0 ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF ENST00000555122.1_1_14:105406018-105406159:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.732009 995.449465 0.096922 4.8338E-05 1.3621 0.00067933 1.459 0.00072767 498.73284184589124 38.057 0.22771 38.074 37.942 38.17 0.01704 -0.032735 -0.0001011 NaN 23.148 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1440000 48664 15222 32867 33619 -0.04844220019447221 PYSSRYYKL 9 Unmodified _PYSSRYYKL_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.87353515625 3 392.873113 1175.59751 -0.28702 -0.00011276 0.29997 0.00011785 0.012949 5.0871E-06 392.87320514045314 31.091 0.30157 31.121 30.97 31.272 0.030106 37 12 4 0 0 0 0.08691 1 16241 16241 33.445 0 1 17284000 48665 1540 32868 33620 56695 56695 0.01673414506035442 PYSSRYYKL 9 Unmodified _PYSSRYYKL_ 0 0 0 ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32 ENSG00000089876|ENST00000284690|DHX32 ENSG00000089876|ENST00000284690|DHX32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8733520507812 3 392.873113 1175.59751 1.0727 0.00042143 -0.81742 -0.00032114 0.25528 0.00010029 392.8727621522021 34.35 0.62563 30.255 30.057 30.683 -4.0951 82 36 3 0 0 0 0.19127 1 19801 19801 41.956 19.219 1 56262000 48666 1540 32868 33620 56696 56696 0.01673414506035442 PYSVAVPAF 9 Unmodified _PYSVAVPAF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.75244140625 2 475.752736 949.490919 0.76502 0.00036396 0.33826 0.00016093 1.1033 0.00052489 475.7529003897829 72.809 0.28766 72.333 72.209 72.497 -0.47588 17 12 2 0 0 0 0.078417 1 39840 39840 38.151 15.003 1 561120 48667 8546;15522 32869 33621 56697 56697 0.014152840115116305 PYSVAVPAF 9 Unmodified _PYSVAVPAF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576995.1_1_17:79079719-79080836:+|nuORF;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 475.7981567382812 2 475.752736 949.490919 0.94164 0.00044799 -0.82863 -0.00039422 0.11302 5.3768E-05 475.7524095305646 80.202 0.3058 74.026 73.791 74.097 -6.1757 25 18 2 0 0 0 0.037958 1 52655 52655 56.541 31.867 1 16326000 48668 8546;15522 32869 33621 56698 56698 0.014152840115116305 PYSYMRDYDRQ 11 Unmodified _PYSYMRDYDRQ_ 0 0 0 REV__ENST00000571636.1_1_16:11336795-11337332:+|nuORF REV__ENST00000571636.1_1_16:11336795-11337332:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.5545654296875 3 498.554114 1492.64051 -0.13536 -6.7483E-05 0.40795 0.00020338 0.27259 0.0001359 498.5543129403191 29.222 0.40938 29.222 29.002 29.411 0 37 19 2 0 0 0 0.62014 1 15084 15084 10.315 6.7282 1 4553600 + 48669 28978 32870 33622 56699 56699 -0.08610183498853985 PYTDVNIVTI 10 Unmodified _PYTDVNIVTI_ 0 0 0 ENST00000558509.5_1_15:78453927-78455839:+|nuORF;ENST00000559889.5_1_15:78449787-78454580:+|nuORF;nc|ENSG00000166411|P50213-2|IDH3A;ENSG00000166411|ENST00000299518|IDH3A ENST00000558509.5_1_15:78453927-78455839:+|nuORF ENST00000558509.5_1_15:78453927-78455839:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.80517578125 2 567.805697 1133.59684 0.79069 0.00044896 -3.8958 -0.0022121 -3.1051 -0.0017631 567.8046235093908 72.593 0.42274 72.117 71.918 72.341 -0.47609 57 19 4 0 0 0 0.035736 1 39740 39740 65.235 49.388 1 2789200 48670 7483 32871 33623 56700 56700 0.035385750663408544 PYTDVVIHEIQ 11 Unmodified _PYTDVVIHEIQ_ 0 0 0 nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3374633789062 2 657.340435 1312.66632 0.67002 0.00044043 -3.7663 -0.0024757 -3.0963 -0.0020353 657.3370031247889 102.13 0.19565 95.952 95.898 96.093 -6.1757 16 8 3 0 0 0 0.39949 1 68565 68565 21.537 8.4945 1 6716800 48671 16634 32872 33624 56701 56701 0.022490340150852717 PYTERVEHL 9 Unmodified _PYTERVEHL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8650207519531 3 381.864617 1142.57202 -0.61484 -0.00023479 3.2122 0.0012266 2.5974 0.00099184 381.86537872288 26.908 0.1689 26.908 26.803 26.972 0 24 7 4 0 0 0 0.30202 1 13845 13845 16.566 3.5234 1 2751800 48672 974 32873 33625 56702 56702 0.006439399836381199 PYTFHSHGITY 11 Unmodified _PYTFHSHGITY_ 0 0 0 ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP ENST00000490639.5_1_3:148895590-148939579:-|nuORF ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.812255859375 2 661.811845 1321.60914 0.92055 0.00060923 -1.6029 -0.0010608 -0.6823 -0.00045155 662.3124375826354 97.793 0.33934 91.617 91.441 91.781 -6.1757 32 22 2 0 0 0 0.46578 1 64888 64888 18.146 1.9972 1 26030000 48673 684 32874 33626 56703 56703 -0.03880388470611251 PYTFVQQHL 9 Unmodified _PYTFVQQHL_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7930297851562 2 566.792924 1131.57129 1.6676 0.0009452 -1.1236 -0.00063684 0.54404 0.00030836 566.7924955009777 50.222 0.22424 50.173 50.046 50.271 -0.048824 22 10 3 0 0 0 0.0090948 1 27134 27134 85.272 47.121 1 2716100 48674 16078 32875 33627 56704 56704 0.01077145334556917 PYTFVQQHL 9 Unmodified _PYTFVQQHL_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7916870117188 2 566.792924 1131.57129 0.64089 0.00036325 3.2023 0.001815 3.8432 0.0021783 566.7953573228776 55.852 0.19797 49.931 49.878 50.076 -5.9211 18 11 2 0 0 0 0.0090948 2 35580 35574;35580 85.272 41.933 1 15490000 48675 16078 32875 33627 56705;56706 56706 0.01077145334556917 PYTIYTNHL 9 Unmodified _PYTIYTNHL_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2850952148438 2 561.284931 1120.55531 1.246 0.00069938 -1.6457 -0.00092373 -0.39971 -0.00022435 561.285337573016 52.758 0.10313 47.023 46.976 47.079 -5.7345 7 5 2 0 0 0 0.0036082 1 33325 33325 123.45 71.182 1 16443000 48676 1489 32876 33628 56707 56707 -0.00014560902354787686 PYTKVEESF 9 Unmodified _PYTKVEESF_ 0 0 0 ENSG00000182858|ENST00000330817|ALG12 ENSG00000182858|ENST00000330817|ALG12 ENSG00000182858|ENST00000330817|ALG12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2681274414062 2 550.268947 1098.52334 NaN NaN NaN NaN NaN NaN NaN 36.113 1 36.113 35.613 36.613 0 0 0 0 0.016726 1 19134 19134 110.55 46.316 1 48677 9094 32877 33629 56708 56708 -0.021979733761327225 PYTKVEESF 9 Unmodified _PYTKVEESF_ 0 0 0 ENSG00000182858|ENST00000330817|ALG12 ENSG00000182858|ENST00000330817|ALG12 ENSG00000182858|ENST00000330817|ALG12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2699584960938 2 550.268947 1098.52334 NaN NaN NaN NaN NaN NaN NaN 36.466 1 36.216 35.716 36.716 -0.2497 0 0 0 0.011453 1 19134 19134 90.135 35.361 1 48678 9094 32877 33629 56709 56709 -0.021979733761327225 PYTNYTFDF 9 Unmodified _PYTNYTFDF_ 0 0 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000138767|ENST00000504123|CNOT6L;ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2529296875 2 584.253297 1166.49204 0.53832 0.00031451 -0.38764 -0.00022648 0.15068 8.8037E-05 584.2525512528097 75.722 0.21397 75.245 75.062 75.276 -0.47714 14 9 2 0 0 0 0.39863 1 41447 41447 12.532 3.9383 1 600660 48679 2956;5102 32878 33630 56710 56710 -0.08454546410234798 PYTPFLTEL 9 Unmodified _PYTPFLTEL_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7836303710938 2 540.784233 1079.55391 0.27664 0.0001496 0.75219 0.00040677 1.0288 0.00055638 540.7846171287201 90.117 0.25937 89.616 89.447 89.706 -0.50172 34 13 3 0 0 0 0.12841 2 49309 49211;49309 30.225 12.09 1 1516300 48680 9795 32879 33631 56711;56712 56712 0.017318050088988457 PYTPFLTEL 9 Unmodified _PYTPFLTEL_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS AL20221201_MKP_PDAC_01 4 540.7842407226562 2 540.784233 1079.55391 NaN NaN NaN NaN NaN NaN NaN 99.103 1 92.927 92.427 93.427 -6.1757 0 0 0 0.096036 1 65901 65901 44.407 18.066 1 48681 9795 32879 33631 56713 56713 0.017318050088988457 PYTTQVYLI 9 Unmodified _PYTTQVYLI_ 0 0 0 ENSG00000142549|ENST00000270642|IGLON5 ENSG00000142549|ENST00000270642|IGLON5 ENSG00000142549|ENST00000270642|IGLON5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.299560546875 2 549.297507 1096.58046 2.4576 0.0013499 1.3458 0.00073924 3.8034 0.0020892 549.2983180902899 96.749 0.3952 96.742 96.505 96.9 -0.0070114 41 14 4 0 0 0 0.095405 1 53684 53684 34.102 1.797 1 8427600 48682 5427 32880 33632 56714 56714 0.03603493900232024 PYTTSTPNI 9 Unmodified _PYTTSTPNI_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;ENST00000472874.1_1_13:99498284-99512707:-|nuORF ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2472839355469 2 497.248015 992.481476 0.20382 0.00010135 -0.088474 -4.3993E-05 0.11535 5.7358E-05 497.248130133968 40.001 0.21786 40.001 39.892 40.11 0 21 10 3 0 0 0 0.03327 1 21472 21472 53.576 36.633 1 2129500 48683 1489 32881 33633 56715 56715 -0.015065290646703033 PYTWHIITI 9 Unmodified _PYTWHIITI_ 0 0 0 REV__ENST00000382758.5_1_13:21306075-21306183:-|nuORF REV__ENST00000382758.5_1_13:21306075-21306183:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3141479492188 2 572.313492 1142.61243 3.6573 0.0020931 -0.079474 -4.5484E-05 3.5779 0.0020477 572.3133308991409 98.315 0.28755 98.287 98.116 98.404 -0.028282 18 10 2 0 0 0 0.18465 1 54593 54593 24.674 10.092 1 2166700 + 48684 26348 32882 33634 56716 56716 0.04682906374023332 PYTWRAEG 8 Unmodified _PYTWRAEG_ 0 0 0 REV__nc|ENSG00000163832|Q0PNE2-2|ELP6 REV__nc|ENSG00000163832|Q0PNE2-2|ELP6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.7549133300781 2 490.235242 978.45593 0.56272 0.00027587 -0.17812 -8.7322E-05 0.3846 0.00018854 490.2346230358875 35.418 0.36783 31.231 31.063 31.431 -4.1871 34 22 2 0 0 0 8.7369 1 20446 20446 10.183 0 1 12249000 + 48685 21824 32883 33635 56717 56717 -0.03415958796426821 PYVDHFLRL 9 Unmodified _PYVDHFLRL_ 0 0 0 nc|ENSG00000136522|Q9HD33-3|MRPL47;nc|ENSG00000136522|Q9HD33-2|MRPL47;ENSG00000136522|ENST00000476781|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2135620117188 3 387.213469 1158.61858 0.22643 8.7677E-05 0.38622 0.00014955 0.61265 0.00023723 387.21367370992505 59.981 0.31826 59.928 59.734 60.052 -0.053062 36 15 3 0 0 0 0.053952 2 32666 32666;32768 43.982 17.714 1 9986100 48686 4831 32884 33636 56718;56719 56718 0.04561424605549291 PYVDHFLRL 9 Unmodified _PYVDHFLRL_ 0 0 0 nc|ENSG00000136522|Q9HD33-3|MRPL47;nc|ENSG00000136522|Q9HD33-2|MRPL47;ENSG00000136522|ENST00000476781|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5482788085938 3 387.213469 1158.61858 1.5369 0.00059512 2.0143 0.00077995 3.5512 0.0013751 387.2138819125682 86.228 0.4836 80.052 79.746 80.23 -6.1757 64 26 4 0 0 0 0.030212 2 56905 56767;56905 55.235 32.577 1 14875000 48687 4831 32884 33636 56720;56721 56721 0.04561424605549291 PYVDNSYKW 9 Unmodified _PYVDNSYKW_ 0 0 0 ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2757568359375 2 586.274564 1170.53457 1.0322 0.00060513 -0.12561 -7.3641E-05 0.90656 0.00053149 586.2744119544426 50.4 0.25972 44.861 44.725 44.985 -5.5391 33 16 3 0 0 0 0.0086209 1 31654 31654 89.401 60.319 1 11575000 48688 2156 32885 33637 56722 56722 -0.043871512820032876 PYVDRQNRI 9 Unmodified _PYVDRQNRI_ 0 0 0 ENSG00000169499|ENST00000617275|PLEKHA2;nc|ENSG00000107679|Q9HB21-2|PLEKHA1;ENSG00000107679|ENST00000368990|PLEKHA1 ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5439758300781 3 387.543878 1159.60981 0.57611 0.00022327 -0.29327 -0.00011365 0.28285 0.00010962 387.5437155017999 22.904 0.30565 20.126 19.945 20.25 -2.7784 39 21 2 0 0 0 0.13231 1 12302 12302 29.841 8.3036 1 35575000 48689 7878 32886 33638 56723 56723 0.03638450969083351 PYVGGLEEF 9 Unmodified _PYVGGLEEF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7454528808594 2 505.745108 1009.47566 0.54294 0.00027459 -0.2414 -0.00012208 0.30154 0.0001525 505.745162357382 66.128 0.31743 66.128 66.03 66.348 0 23 14 2 0 0 0 0.16776 1 36897 36897 26.341 14.701 1 2394200 48690 4151 32887 33639 56724 56724 -0.02869627576330913 PYVGIHLRI 9 Unmodified _PYVGIHLRI_ 0 0 0 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.5501708984375 3 356.550193 1066.62875 NaN NaN NaN NaN NaN NaN NaN 55.715 1 55.646 55.146 56.146 -0.068737 0 0 0 0.098496 1 30284 30284 43.772 17.504 1 48691 1950 32888 33640 56725 56725 0.09810032330778995 PYVHPYYEYYL 11 Unmodified _PYVHPYYEYYL_ 0 0 0 REV__ENSG00000171853|ENST00000324266|TRAPPC12 REV__ENSG00000171853|ENST00000324266|TRAPPC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.9029846191406 3 502.902849 1505.68672 -0.16683 -8.39E-05 0.17693 8.8978E-05 0.010099 5.0788E-06 502.90303089588167 36.282 0.22824 36.307 36.168 36.396 0.024967 22 9 3 0 0 0 0.73237 1 19206 19206 1.2148 0.10508 1 1915700 + 48692 22607 32889 33641 56726 56726 -0.045897953250914725 PYVKGSGV 8 Unmodified _PYVKGSGV_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.2339172363281 2 403.723978 805.433404 0.27844 0.00011241 0.85315 0.00034444 1.1316 0.00045685 403.7243170872793 4.0067 0.084864 1.5247 1.4616 1.5465 -2.482 47 33 2 0 0 0 8.7369 1 2031 2031 0.6015 0 1 625680 + 48693 16987 32890 33642 56727 56727 0.02290441805962473 PYVKKVIVYL 10 Unmodified _PYVKKVIVYL_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.9254150390625 3 407.925037 1220.75328 0.04903 2E-05 0.44138 0.00018005 0.49041 0.00020005 407.92530245100176 48.721 0.23867 48.677 48.495 48.734 -0.04369 18 11 2 0 0 0 0.68844 1 26276 26276 4.1895 1.4543 1 1527300 48694 1160 32891 33643 56728 56728 0.15173485027480638 PYVMATGVIF 10 Unmodified _PYVMATGVIF_ 0 0 0 REV__nc|ENSG00000167986|Q16531-2|DDB1 REV__nc|ENSG00000167986|Q16531-2|DDB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7875366210938 2 549.288628 1096.5627 0.63816 0.00035053 2.007 0.0011024 2.6452 0.001453 549.2900158636312 46.486 0.56396 46.486 46.294 46.858 0 42 26 2 0 0 0 0.23117 1 25404 25404 7.2892 0 1 6532100 + 48695 22273 32892 33644 56729 56729 0.018284553737430542 PYVNNVPHL 9 Unmodified _PYVNNVPHL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7799682617188 2 526.779816 1051.54508 0.51277 0.00027012 0.40563 0.00021368 0.9184 0.00048379 526.7800129245567 47.749 0.33197 47.397 47.223 47.555 -0.3526 40 15 4 0 0 0 0.0021514 2 25571 25571;25679 131.3 100.66 1 55622000 48696 7561 32893 33645 56730;56731 56730 0.021368761630810695 PYVNNVPHL 9 Unmodified _PYVNNVPHL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7811889648438 2 526.779816 1051.54508 NaN NaN NaN NaN NaN NaN NaN 47.424 1 47.386 46.886 47.886 -0.038643 0 0 0 1.4687E-06 1 25552 25552 146.01 103.91 1 48697 7561 32893 33645 56732 56732 0.021368761630810695 PYVNNVPHL 9 Unmodified _PYVNNVPHL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.779541015625 2 526.779816 1051.54508 0.6029 0.0003176 0.5076 0.00026739 1.1105 0.00058499 526.7798641571466 53.235 0.44278 47.431 47.216 47.659 -5.8042 65 27 4 0 0 0 0.000405 2 33565 33565;33690 146.01 107.86 1 246050000 48698 7561 32893 33645 56733;56734 56733 0.021368761630810695 PYVPPLPNVR 10 Unmodified _PYVPPLPNVR_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.8654479980469 3 384.557236 1150.64988 1.3212 0.00050807 -0.19798 -7.6136E-05 1.1232 0.00043194 384.5572683277852 42.888 0.26383 38.203 38.041 38.305 -4.6846 32 16 3 0 0 0 0.22949 1 25942 25942 11.518 1.9739 1 8202100 48699 441 32894 33646 56735 56735 0.08057997639639325 PYVPPLPNVR 10 Unmodified _PYVPPLPNVR_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 384.557236 1150.64988 0.026231 1.0087E-05 0.20967 8.0631E-05 0.2359 9.0718E-05 384.5573472643281 38.271 0.22381 38.288 38.17 38.394 0.01704 0.042704 0.00017861 NaN 11.518 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2841000 48700 441 32894 33646 0.08057997639639325 PYVRNTPQF 9 Unmodified _PYVRNTPQF_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8286743164062 2 561.290548 1120.56654 0.33877 0.00019015 0.037442 2.1016E-05 0.37621 0.00021117 561.2904186999933 37.489 0.19852 37.506 37.394 37.592 0.017273 22 9 3 0 0 0 0.21302 1 19880 19880 5.7319 1.4026 1 4054100 48701 325 32895 33647 56736 56736 0.011082611918027396 PYVVRLHNF 9 Unmodified _PYVVRLHNF_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5;ENST00000557758.1_1_14:23391634-23392032:-|nuORF nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2133483886719 3 382.213581 1143.61891 -0.017689 -6.761E-06 0.075605 2.8897E-05 0.057916 2.2136E-05 382.21360431847506 44.37 0.22134 44.348 44.224 44.446 -0.022064 17 10 2 0 0 0 0.010818 1 23796 23796 70.332 47.596 1 8538500 48702 1832 32896 33648 56737 56737 0.052848443254106314 PYVVRTTAAT 10 Unmodified _PYVVRTTAAT_ 0 0 0 REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2009887695312 3 360.201229 1077.58186 NaN NaN NaN NaN NaN NaN NaN 30.407 1 30.437 29.937 30.937 0.030106 0 0 0 0.97556 1 15897 15897 3.3196 0.038334 1 + 48703 27513 32897 33649 56738 56738 0.046171279889904326 PYVWTDVGF 9 Unmodified _PYVWTDVGF_ 0 0 0 REV__ENSG00000183862|ENST00000329903|CNGA2 REV__ENSG00000183862|ENST00000329903|CNGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2626342773438 2 542.260925 1082.5073 0.348 0.0001887 1.3219 0.00071682 1.6699 0.00090553 542.2617256396045 82.933 0.3537 82.436 82.203 82.557 -0.49751 39 15 3 0 0 0 0.37804 1 45466 45466 13.508 0 1 13145000 + 48704 23382 32898 33650 56739 56739 -0.0306563482238289 PYWGWAII 8 Unmodified _PYWGWAII_ 0 0 0 ENSG00000175336|ENST00000398189|APOF ENSG00000175336|ENST00000398189|APOF ENSG00000175336|ENST00000398189|APOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.265625 2 503.263271 1004.51199 NaN NaN NaN NaN NaN NaN NaN 40.729 1 40.729 40.229 41.229 0 0 0 0 0.62523 1 21909 21909 32.454 0.14816 1 48705 8511 32899 33651 56740 56740 0.00991294111042862 PYYAKPYEI 9 Unmodified _PYYAKPYEI_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000493220.5_2_17:29556858-29657521:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2836303710938 2 572.289682 1142.56481 0.79889 0.0004572 -0.08201 -4.6934E-05 0.71688 0.00041026 572.2904633487776 49.856 0.061417 44.316 44.282 44.344 -5.5391 5 3 2 0 0 0 0.018301 1 31170 31170 65.235 19.214 1 10905000 48706 16480 32900 33652 56741 56741 -0.0007679261680095806 PYYGFQAF 8 Unmodified _PYYGFQAF_ 0 0 0 nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 nc|ENSG00000159363|Q9NQ11-2|ATP13A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7292175292969 2 496.729261 991.443968 0.33298 0.0001654 -0.94703 -0.00047042 -0.61405 -0.00030502 496.7289256990728 24.378 0.517 21.551 21.374 21.891 -2.8273 62 28 3 0 0 0 0.65867 2 13203 13203;13317 20.871 2.7362 1 13364000 48707 6650 32901 33653 56742;56743 56742 -0.05209575539618072 PYYGREEELRK 11 Unmodified _PYYGREEELRK_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.8695068359375 2 720.367515 1438.72048 0.90492 0.00065188 1.1511 0.0008292 2.056 0.0014811 720.3678654288752 57.436 0.21714 57.37 57.277 57.494 -0.066036 17 10 2 0 0 0 0.58219 1 31283 31283 12.241 2.8575 1 1470400 48708 5930 32902 33654 56744 56744 0.01866626166633978 PYYHKVDFECI 11 Unmodified _PYYHKVDFECI_ 0 0 0 ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 ENSG00000138399|ENST00000453153|FASTKD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 707.3297119140625 2 707.329013 1412.64347 0.80075 0.00056639 0.21951 0.00015526 1.0203 0.00072166 707.3291178286963 36.07 0.38815 31.877 31.678 32.067 -4.1928 66 23 4 0 0 0 0.5229 1 21067 21067 15.248 3.7538 1 29795000 48709 5049 32903 33655 56745 56745 -0.04634308374011198 PYYIRETENFY 11 Unmodified _PYYIRETENFY_ 0 0 0 ENSG00000136546|ENST00000643258|SCN7A;SCN7A|p.S378Kfs*21|1|0.36|ENSG00000136546|chr2:166457029-166457030|-/A|frameshift_variant ENSG00000136546|ENST00000643258|SCN7A ENSG00000136546|ENST00000643258|SCN7A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7618103027344 3 498.901508 1493.6827 0.608 0.00030333 -3.0464 -0.0015198 -2.4384 -0.0012165 498.90081569311855 38.526 0.10358 38.526 38.494 38.598 0 5 4 2 0 0 0 0.3058 1 20607 20607 0.50596 0.41111 1 773450 48710 4836 32904 33656 56746 56746 -0.04439884818793871 PYYIVKQGKI 10 Unmodified _PYYIVKQGKI_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.237548828125 3 403.572775 1207.69649 0.86894 0.00035068 -2.0444 -0.00082506 -1.1754 -0.00047438 403.5719398831797 81.913 0.23016 75.738 75.618 75.849 -6.1757 19 12 2 0 0 0 0.23986 1 53779 53779 0.77653 0 1 12957000 48711 2543 32905 33657 56747 56747 0.10095437470954494 PYYPSPGVLF 10 Unmodified _PYYPSPGVLF_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MSMS AL20221201_MKP_PDAC_01 4 570.29443359375 2 570.292225 1138.5699 NaN NaN NaN NaN NaN NaN NaN 93.261 1 87.086 86.586 87.586 -6.1757 0 0 0 0.21264 1 61718 61718 42.095 20.348 1 48712 4012 32906 33658 56748 56748 0.006155112458145595 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3267211914062 2 572.326068 1142.63758 0.36623 0.00020961 -0.22636 -0.00012955 0.13988 8.0056E-05 572.326180890972 78.874 0.5302 78.929 78.679 79.21 0.054977 70 20 6 0 0 0 0.011739 2 43623 43515;43623 72.968 36.924 1 77033000 48713 7247 32907 33659 56749;56750 56750 0.07196961176623518 PYYSKFILI 9 Unmodified _PYYSKFILI_ 0 0 0 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 ENSG00000164815|ENST00000297431|ORC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.32666015625 2 572.326068 1142.63758 1.3795 0.00078954 -0.1347 -7.7093E-05 1.2448 0.00071245 572.3263141009655 96.771 0.38283 90.595 90.404 90.787 -6.1757 63 22 4 0 0 0 0.018061 2 64069 64069;64190 62.573 21.4 1 400800000 48714 7247 32907 33659 56751;56752 56751 0.07196961176623518 PYYTYLRP 8 Unmodified _PYYTYLRP_ 0 0 0 REV__ENST00000306562.7_1_1:249142917-249143094:+|nuORF REV__ENST00000306562.7_1_1:249142917-249143094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.187744140625 3 358.18692 1071.53893 NaN NaN NaN NaN NaN NaN NaN 58.371 1 58.371 57.871 58.871 0 0 0 0 0.97444 1 32500 32500 1.8442 0 1 + 48715 25381 32908 33660 56753 56753 0.00602357931552433 QAAALNAAY 9 Unmodified _QAAALNAAY_ 0 0 0 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 ENSG00000127666|ENST00000248244|TICAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.7298278808594 2 446.729792 891.445031 0.39739 0.00017752 -1.1315 -0.00050548 -0.73413 -0.00032796 446.72945907365886 35.962 0.21755 35.962 35.836 36.053 0 14 10 2 0 0 0 0.06187 1 19065 19065 42.095 7.9921 1 3255700 48716 4025 32909 33661 56754 56754 -0.005033611707176533 QAADDTEISF 10 Unmodified _QAADDTEISF_ 0 0 0 nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL nc|ENSG00000136279|Q9UJU6-5|DBNL nc|ENSG00000136279|Q9UJU6-5|DBNL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7431030273438 2 548.743293 1095.47203 0.90838 0.00049847 -0.88063 -0.00048324 0.027753 1.523E-05 548.7428682250641 51.202 0.45357 51.202 50.978 51.431 0 55 21 4 0 0 0 0.041224 1 28263 28263 62.573 24.599 1 36992000 48717 4812 32910 33662 56755 56755 -0.07188342140875648 QAADDTEISF 10 Unmodified _QAADDTEISF_ 0 0 0 nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL;nc|ENSG00000136279|Q9UJU6-6|DBNL nc|ENSG00000136279|Q9UJU6-5|DBNL nc|ENSG00000136279|Q9UJU6-5|DBNL MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.74365234375 2 548.743293 1095.47203 1.054 0.00057837 -0.43077 -0.00023638 0.62322 0.00034199 548.7424623641084 59.282 0.38745 53.208 52.953 53.341 -6.0745 50 21 3 0 0 0 0.1942 2 37938 37938;38073 34.402 12.38 1 50710000 48718 4812 32910 33662 56756;56757 56756 -0.07188342140875648 QAADFAEQF 9 Unmodified _QAADFAEQF_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7295532226562 2 513.729989 1025.44543 0.53596 0.00027534 -0.31661 -0.00016265 0.21936 0.00011269 513.730336031813 53.667 0.75062 53.667 53.281 54.032 0 70 34 3 0 0 0 0.008678 1 29736 29736 88.904 52.777 1 18826000 48719 10651 32911 33663 56758 56758 -0.06627986241505823 QAADFAEQF 9 Unmodified _QAADFAEQF_ 0 0 0 nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL;ENSG00000237190|ENST00000458198|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL nc|ENSG00000237190|Q96HQ2-2|CDKN2AIPNL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.8138427734375 2 513.729989 1025.44543 1.0587 0.00054391 -0.7032 -0.00036126 0.35554 0.00018265 514.2311171714703 61.579 0.37108 55.403 55.248 55.619 -6.1757 35 18 3 0 0 0 0.021386 1 39626 39626 62.573 22.623 1 33836000 48720 10651 32911 33663 56759 56759 -0.06627986241505823 QAADHQPIL 9 Unmodified _QAADHQPIL_ 0 0 0 ENSG00000284024|ENST00000640019|MSANTD7 ENSG00000284024|ENST00000640019|MSANTD7 ENSG00000284024|ENST00000640019|MSANTD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7615356445312 2 496.761623 991.508694 -0.70844 -0.00035193 1.5665 0.00077816 0.85802 0.00042623 496.7620308533664 32.132 0.221 32.132 31.983 32.204 0 16 10 2 0 0 0 0.087258 1 16749 16749 36.044 14.298 1 1391200 48721 10957 32912 33664 56760 56760 0.012599992663922421 QAADIDTRSEF 11 Unmodified _QAADIDTRSEF_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.7931518554688 2 626.793849 1251.57314 -0.48249 -0.00030242 0.51064 0.00032007 0.028153 1.7646E-05 626.7941006899104 34.322 0.21496 34.322 34.207 34.422 0 26 10 3 0 0 0 3.9134E-06 1 18055 18055 97.741 70.112 1 6561800 48722 5009 32913 33665 56761 56761 -0.04257890438157119 QAADIDTRSEF 11 Unmodified _QAADIDTRSEF_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.7936401367188 2 626.793849 1251.57314 0.66553 0.00041715 -0.11293 -7.0785E-05 0.5526 0.00034636 626.793436485547 39.466 0.28262 35.015 34.858 35.141 -4.4509 26 16 2 0 0 0 6.1613E-11 1 23426 23426 121.5 75.804 1 9766400 48723 5009 32913 33665 56762 56762 -0.04257890438157119 QAADSILVL 9 Unmodified _QAADSILVL_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523321.5_1_8:95835614-95871872:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.5314331054688 1 929.530224 928.522947 0.405 0.00037646 0.093523 8.6932E-05 0.49852 0.00046339 929.5305344628875 75.592 0.29318 75.592 75.453 75.746 0 20 11 2 0 0 0 0.011968 1 42055 42055 74.929 26.583 1 869470 48724 7269 32914 33666 56763 56763 0.05582651694669494 QAADTVVIF 9 Unmodified _QAADTVVIF_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.26123046875 2 482.260925 962.507297 -0.038263 -1.8453E-05 0.13761 6.6366E-05 0.099352 4.7914E-05 482.2609861838685 70.823 0.37012 70.823 70.565 70.935 0 74 40 2 0 0 0 0.044011 1 39479 39479 47.749 7.7914 1 3247300 48725 1298 32915 33667 56764 56764 0.024543651776298248 QAADYFGDAF 10 Unmodified _QAADYFGDAF_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7362060546875 2 552.735271 1103.45599 0.64522 0.00035664 -0.27564 -0.00015235 0.36959 0.00020428 552.7350745964812 66.648 0.34818 66.648 66.491 66.839 0 42 15 3 0 0 0 0.016642 2 37134 37134;37236 78.728 64.822 1 9749000 48726 7963 32916 33668 56765;56766 56765 -0.09160003587089705 QAADYFGDAF 10 Unmodified _QAADYFGDAF_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000459659.1_1_3:33863478-33868168:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7352905273438 2 552.735271 1103.45599 0.55289 0.0003056 2.5047 0.0013844 3.0576 0.00169 553.238438761561 67.264 0.19157 66.782 66.675 66.866 -0.48218 15 8 2 0 0 0 0.13391 1 36758 36758 41.84 23.693 1 774920 48727 7963 32916 33668 56767 56767 -0.09160003587089705 QAAEAIDDIPF 11 Unmodified _QAAEAIDDIPF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7932739257812 2 595.290411 1188.56627 0.066483 3.9577E-05 1.1336 0.00067485 1.2001 0.00071443 595.2914153993903 76.008 0.50085 76.008 75.77 76.271 0 39 20 3 0 0 0 0.67477 1 42196 42196 12.241 6.5088 1 4235200 48728 9390 32917 33669 56768 56768 -0.020472033187161287 QAAELIDSEF 10 Unmodified _QAAELIDSEF_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7702026367188 2 561.769311 1121.52407 0.31203 0.00017529 0.046414 2.6074E-05 0.35844 0.00020136 561.7696641493478 62.775 0.39373 62.775 62.569 62.963 0 52 16 5 0 0 0 0.051223 2 34964 34964;35067 57.722 23.32 1 8489900 48729 1657 32918 33670 56769;56770 56769 -0.03183178727090308 QAALAVLLY 9 Unmodified _QAALAVLLY_ 0 0 0 nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.28857421875 2 481.289485 960.564418 0.5801 0.0002792 -0.09237 -4.4457E-05 0.48773 0.00023474 481.2892526790454 88.053 0.32539 87.548 87.4 87.725 -0.50423 29 14 3 0 0 0 0.2001 2 48119 48119;48232 23.148 3.7094 1 1055100 48730 7795 32919 33671 56771;56772 56771 0.08255832453983203 QAALEYLGSF 10 Unmodified _QAALEYLGSF_ 0 0 0 nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7772827148438 2 549.776939 1097.53933 0.41499 0.00022815 0.13802 7.588E-05 0.55301 0.00030403 549.7768776877439 92.283 0.15958 91.802 91.721 91.88 -0.48092 10 6 2 0 0 0 0.69377 1 50449 50449 3.5965 1.5367 1 336400 48731 2319 32920 33672 56773 56773 -0.005542671392504417 QAAMPQVSY 9 Oxidation (M) _QAAM(Oxidation (M))PQVSY_ QAAM(1)PQVSY QAAM(50)PQVSY 0 0 1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7340087890625 2 505.734217 1009.45388 0.54338 0.00027481 -1.7322 -0.00087604 -1.1888 -0.00060124 505.73377548519477 31.383 0.3297 31.383 31.152 31.482 0 42 15 4 0 0 0 0.039985 1 16295 16295 49.933 26.785 1 28785000 48732 8631 32921 33673 56774 56774 1459 -0.05046755596549701 QAAMPQVSY 9 Oxidation (M) _QAAM(Oxidation (M))PQVSY_ QAAM(1)PQVSY QAAM(50)PQVSY 0 0 1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7339477539062 2 505.734217 1009.45388 -0.14212 -7.1877E-05 -0.59476 -0.00030079 -0.73689 -0.00037267 505.7343051172916 31.891 0.32434 31.891 31.739 32.063 0 42 15 4 0 0 0 0.039985 1 16587 16587 49.933 23.049 1 37437000 48733 8631 32921 33673 56775 56775 1459 -0.05046755596549701 QAAMPQVSY 9 Oxidation (M) _QAAM(Oxidation (M))PQVSY_ QAAM(1)PQVSY QAAM(59)PQVSY 0 0 1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7347412109375 2 505.734217 1009.45388 0.45944 0.00023235 -0.16848 -8.5204E-05 0.29096 0.00014715 505.73412710021984 36.485 0.47898 32.292 32.067 32.545 -4.1928 62 29 3 0 0 0 0.024882 1 21322 21322 58.679 31.05 1 42434000 48734 8631 32921 33673 56776 56776 1459 -0.05046755596549701 QAAMPQVSY 9 Oxidation (M) _QAAM(Oxidation (M))PQVSY_ QAAM(1)PQVSY QAAM(63)PQVSY 0 0 1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7342529296875 2 505.734217 1009.45388 1.1471 0.00058013 -0.44222 -0.00022365 0.70488 0.00035648 505.7342108766583 37.104 0.4985 32.821 32.557 33.056 -4.2835 74 30 4 0 0 0 0.020973 2 21630 21630;21757 62.573 25.567 1 51363000 48735 8631 32921 33673 56777;56778 56777 1459 -0.05046755596549701 QAAMPQVSY 9 Unmodified _QAAMPQVSY_ 0 0 0 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7376403808594 2 497.73676 993.458967 NaN NaN NaN NaN NaN NaN NaN 44.888 1 44.888 44.388 45.388 0 0 0 0 0.047623 1 24443 24443 58.679 16.584 1 48736 8631 32921 33674 56779 56779 -0.038024517339295016 QAAMPQVSY 9 Unmodified _QAAMPQVSY_ 0 0 0 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7371215820312 2 497.73676 993.458967 0.62569 0.00031143 -0.057675 -2.8707E-05 0.56802 0.00028272 497.7368077176941 52.153 0.42333 46.419 46.194 46.617 -5.7345 68 27 3 0 0 0 0.013323 2 32928 32789;32928 71.134 51.877 1 191210000 48737 8631 32921 33674 56780;56781 56781 -0.038024517339295016 QAAMPQVSY 9 Unmodified _QAAMPQVSY_ 0 0 0 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.4692993164062 1 994.466243 993.458967 0.41699 0.00041469 0.83127 0.00082667 1.2483 0.0012414 994.4663486504713 52.145 0.37339 46.41 46.207 46.58 -5.7345 40 24 3 0 0 0 5.3094E-21 3 32960 32825;32938;32960 198.25 140.78 1 56020000 48738 8631 32921 33674 56782;56783;56784 56784 -0.038024517339295016 QAAPLSGQTF 10 Unmodified _QAAPLSGQTF_ 0 0 0 nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1 nc|ENSG00000185591|P08047-3|SP1 nc|ENSG00000185591|P08047-3|SP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2618713378906 2 510.261456 1018.50836 0.57328 0.00029252 0.40459 0.00020645 0.97787 0.00049897 510.261503247453 46.61 0.30148 46.61 46.461 46.762 0 32 13 3 0 0 0 0.024115 1 25453 25453 71.922 54.98 1 5551200 48739 9386 32922 33675 56785 56785 -0.00015420453473780071 QAAQCYIKY 9 Carbamidomethyl (C) _QAAQC(Carbamidomethyl (C))YIKY_ QAAQC(1)YIKY QAAQC(59)YIKY 0 1 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000475021.1_1_5:137525501-137525636:-|nuORF ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7816772460938 2 572.776416 1143.53828 0.80127 0.00045895 4.4137 0.0025281 5.215 0.002987 572.7803514273749 40.572 0.29465 36.042 35.918 36.212 -4.5294 25 17 2 0 0 0 0.024882 1 24242 24242 58.679 36.021 1 8263100 48740 1638 32923 33676 56786 56786 157 -0.027748047798240805 QAAQKLEQF 9 Unmodified _QAAQKLEQF_ 0 0 0 ENSG00000198805|ENST00000361505|PNP;ENST00000556754.1_1_14:20943209-20944757:+|nuORF;ENST00000554056.5_1_14:20942916-20944757:+|nuORF ENSG00000198805|ENST00000361505|PNP ENSG00000198805|ENST00000361505|PNP MSMS AL20221201_MKP_PDAC_01 4 531.7794799804688 2 531.782556 1061.55056 NaN NaN NaN NaN NaN NaN NaN 47.62 1 42.386 41.886 42.886 -5.2339 0 0 0 0.25233 1 29573 29573 27.629 2.2295 1 48741 10158 32924 33677 56787 56787 0.022245549549097632 QAAQLSTTF 9 Unmodified _QAAQLSTTF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7481384277344 2 483.748182 965.481811 0.20803 0.00010063 -0.34091 -0.00016492 -0.13288 -6.428E-05 483.74803352544353 46.865 0.38482 46.865 46.718 47.103 0 47 18 3 0 0 0 0.019303 2 25584 25584;25703 64.236 31.931 1 37885000 48742 6326 32925 33678 56788;56789 56788 -0.002311093448270185 QAAQLSTTF 9 Unmodified _QAAQLSTTF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4881591796875 1 966.489087 965.481811 0.097226 9.3968E-05 -1.2312 -0.0011899 -1.134 -0.001096 966.4879295333204 46.879 0.2824 46.879 46.74 47.022 0 22 13 2 0 0 0 0.019303 1 25599 25599 64.236 30.134 1 3257000 48743 6326 32925 33678 56790 56790 -0.002311093448270185 QAAQLSTTF 9 Unmodified _QAAQLSTTF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7483825683594 2 483.748182 965.481811 0.79505 0.00038461 -0.32928 -0.00015929 0.46577 0.00022532 483.7480744985763 47.204 0.21689 46.852 46.722 46.938 -0.3526 18 10 2 0 0 0 0.023164 1 25292 25292 60.39 42.255 1 2929100 48744 6326 32925 33678 56791 56791 -0.002311093448270185 QAAQLSTTF 9 Unmodified _QAAQLSTTF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7485046386719 2 483.748182 965.481811 1.3018 0.00062972 -0.25432 -0.00012303 1.0474 0.0005067 483.74802616833733 54.019 0.50682 48.154 47.947 48.454 -5.8653 55 29 2 0 0 0 0.012148 3 34263 34131;34263;34412 74.423 42.117 1 60632000 48745 6326 32925 33678 56792;56793;56794 56793 -0.002311093448270185 QAAQLSTTF 9 Unmodified _QAAQLSTTF_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4909057617188 1 966.489087 965.481811 1.0779 0.0010418 0.4945 0.00047793 1.5724 0.0015197 966.4894505919772 54.07 0.36157 48.205 48.005 48.366 -5.8653 34 20 2 0 0 0 0.0085164 2 34286 34154;34286 107.19 57.254 1 13569000 48746 6326 32925 33678 56795;56796 56796 -0.002311093448270185 QAARACFAL 9 Carbamidomethyl (C) _QAARAC(Carbamidomethyl (C))FAL_ QAARAC(1)FAL QAARAC(71)FAL 0 1 0 ENSG00000142627|ENST00000358432|EPHA2;nc|ENSG00000142627|P29317-2|EPHA2;ENST00000461614.1_1_1:16475516-16482484:-|nuORF ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2590942382812 2 504.258194 1006.50183 0.84149 0.00042433 0.4177 0.00021063 1.2592 0.00063496 504.2584766767624 48.324 0.57047 43.09 42.711 43.282 -5.2339 58 34 2 0 0 0 0.013323 1 30000 30000 71.134 32.982 1 93563000 48747 5434 32926 33679 56797 56797 555 -0.001156368858460155 QAASLLQKY 9 Unmodified _QAASLLQKY_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2889099121094 2 511.287474 1020.5604 0.35178 0.00017986 0.53953 0.00027585 0.8913 0.00045571 511.2880439505126 40.421 0.17138 40.124 40.028 40.199 -0.29716 13 7 2 0 0 0 0.039985 1 21384 21384 49.933 25.259 1 2225500 48748 9138 32927 33680 56798 56798 0.05093742960275449 QACARRPRL 9 Unmodified _QACARRPRL_ 0 0 0 REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5387878417969 3 357.538182 1069.59272 0.25376 9.073E-05 1.5851 0.00056672 1.8388 0.00065745 357.5385137221766 42.472 0.24109 42.464 42.34 42.581 -0.0088196 24 10 3 0 0 0 0.55144 1 22733 22733 2.4985 0 1 5276100 + 48749 27555 32928 33681 56799 56799 0.060702518823063656 QACARRPRL 9 Unmodified _QACARRPRL_ 0 0 0 REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 357.538182 1069.59272 0.61575 0.00022015 0.4846 0.00017326 1.1003 0.00039342 357.53828005183925 42.485 0.22461 42.485 42.401 42.625 0 0.010929 -0.00049164 NaN 2.4985 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1996800 + 48750 27555 32928 33681 0.060702518823063656 QACARRPRL 9 Unmodified _QACARRPRL_ 0 0 0 REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF REV__ENST00000487318.6_1_2:216928831-216946521:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.538182 1069.59272 0.25376 9.073E-05 1.5851 0.00056672 1.8388 0.00065745 357.5385137221766 42.472 0.24109 42.464 42.34 42.581 -0.0088196 -0.010929 0.00068875 NaN 2.4985 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5276100 + 48751 27555 32928 33681 0.060702518823063656 QACLRLCAF 9 Unmodified _QACLRLCAF_ 0 0 0 REV__ENST00000553596.2_1_14:32545343-32545523:-|nuORF REV__ENST00000553596.2_1_14:32545343-32545523:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7574462890625 2 512.756972 1023.49939 0.25261 0.00012953 -0.27972 -0.00014343 -0.027109 -1.39E-05 512.7567684274023 79.044 0.39389 79.044 78.809 79.203 0 40 18 3 0 0 0 0.023164 2 43926 43829;43926 60.39 24.345 1 3243300 + 48752 28737 32929 33682 56800;56801 56801 -0.011418086151593343 QACPHDVEM 9 Carbamidomethyl (C),Oxidation (M) _QAC(Carbamidomethyl (C))PHDVEM(Oxidation (M))_ QAC(1)PHDVEM QACPHDVEM(1) QAC(48)PHDVEM QACPHDVEM(48) 0 1 1 ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.71728515625 2 551.718241 1101.42193 0.14528 8.0152E-05 0.32107 0.00017714 0.46634 0.00025729 551.7184566787108 16.164 0.20218 13.607 13.508 13.71 -2.557 51 32 2 0 0 0 0.042911 1 8337 8337 48.346 40.436 1 2695300 48753 4358 32930 33683 56802 56802 440 789 -0.12472491341986824 QACPHDVEM 9 Carbamidomethyl (C) _QAC(Carbamidomethyl (C))PHDVEM_ QAC(1)PHDVEM QAC(46)PHDVEM 0 1 0 ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.72119140625 2 543.720784 1085.42701 0.43626 0.00023721 -0.22874 -0.00012437 0.20752 0.00011283 543.7207460418349 26.7 0.3224 23.749 23.579 23.901 -2.9511 40 16 3 0 0 0 0.047196 1 14681 14681 46.021 29.079 1 11591000 48754 4358 32930 33684 56803 56803 440 -0.11228187479400731 QACRAMEEM 9 Carbamidomethyl (C) _QAC(Carbamidomethyl (C))RAMEEM_ QAC(1)RAMEEM QAC(76)RAMEEM 0 1 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.22900390625 2 563.227919 1124.44128 0.62615 0.00035267 -1.1016 -0.00062046 -0.47547 -0.0002678 563.2278866382592 27.55 0.3032 24.514 24.395 24.699 -3.0365 25 14 3 0 0 0 0.011671 1 15334 15334 75.761 27.415 1 12525000 48755 6399 32931 33685 56804 56804 636 -0.11595858322766617 QACRNVAQY 9 Carbamidomethyl (C) _QAC(Carbamidomethyl (C))RNVAQY_ QAC(1)RNVAQY QAC(100)RNVAQY 0 1 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2625732421875 2 555.261465 1108.50838 1.2281 0.00068193 2.3741 0.0013183 3.6023 0.0020002 555.2626581735548 20.637 0.22451 17.944 17.841 18.065 -2.693 28 14 3 0 0 0 0.0088975 1 11009 11009 104.8 19.442 1 5113300 48756 9907 32932 33686 56805 56805 903 -0.041537437251463416 QACSSLHAL 9 Carbamidomethyl (C) _QAC(Carbamidomethyl (C))SSLHAL_ QAC(1)SSLHAL QAC(42)SSLHAL 0 1 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000568855.1_1_16:70265056-70269235:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2413024902344 2 493.739834 985.465115 1.4486 0.00071524 -0.4624 -0.00022831 0.98623 0.00048694 493.7406356745091 33.914 0.40189 29.929 29.765 30.167 -3.9853 43 21 3 0 0 0 0.06187 1 19492 19492 42.095 20.348 1 7530000 48757 6500 32933 33687 56806 56806 641 -0.02819933502416916 QADAEDSPPSL 11 Unmodified _QADAEDSPPSL_ 0 0 0 nc|ENSG00000037280|P35916-1|FLT4;ENSG00000037280|ENST00000261937|FLT4 nc|ENSG00000037280|P35916-1|FLT4 nc|ENSG00000037280|P35916-1|FLT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2545776367188 2 565.254025 1128.4935 -0.31787 -0.00017968 1.2168 0.00068779 0.89891 0.00050811 565.2548949568155 28.811 0.19923 28.811 28.704 28.903 0 15 9 2 0 0 0 0.58219 1 14913 14913 12.241 2.1667 1 1787800 48758 626 32934 33688 56807 56807 -0.06560957112128563 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.262451171875 2 540.261456 1078.50836 0.35352 0.00019099 -0.27554 -0.00014886 0.07798 4.2129E-05 540.2613129910508 54.932 0.42799 54.932 54.765 55.193 0 49 18 3 0 0 0 0.032796 2 30470 30470;30571 50.855 32.709 1 63328000 48759 2308 32935 33689 56808;56809 56808 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2616577148438 2 540.261456 1078.50836 0.3077 0.00016624 0.32683 0.00017657 0.63453 0.00034281 540.2616007367864 55.557 0.37638 55.079 54.861 55.238 -0.47798 61 17 5 0 0 0 0.025842 2 30177 30071;30177 54.774 27.145 1 46736000 48760 2308 32935 33689 56810;56811 56811 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.788818359375 2 540.261456 1078.50836 0.1813 9.7949E-05 0.77089 0.00041648 0.95219 0.00051443 540.2619895911056 55.125 0.25894 55.057 54.999 55.258 -0.068741 26 12 3 0 0 0 0.20528 1 30008 30008 8.5933 2.8614 1 2365900 48761 2308 32935 33689 56812 56812 -0.027754204534630844 QADFSVLHY 9 Unmodified _QADFSVLHY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2603759765625 2 540.261456 1078.50836 0.97455 0.00052651 -0.69791 -0.00037705 0.27664 0.00014946 540.2611144147897 61.482 0.62888 55.335 54.918 55.547 -6.1478 71 31 3 0 0 0 0.040683 2 39526 39526;39648 54.774 32.037 1 157900000 48762 2308 32935 33689 56813;56814 56813 -0.027754204534630844 QADGEPDL 8 Unmodified _QADGEPDL_ 0 0 0 REV__nc|ENSG00000105664|P49747-2|COMP REV__nc|ENSG00000105664|P49747-2|COMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.3694458007812 1 844.368303 843.361027 0.59246 0.00050025 -0.59594 -0.00050319 -0.003478 -2.9367E-06 844.3678579925075 51.181 0.1938 51.181 51.132 51.326 0 11 8 2 0 0 0 0.40035 1 28275 28275 44.407 4.4497 1 1742400 + + 48763 16824 32936 33690 56815 56815 -0.06691937058280928 QADPTKLEL 9 Unmodified _QADPTKLEL_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7765197753906 2 507.776939 1013.53933 0.16418 8.3365E-05 -0.48956 -0.00024859 -0.32539 -0.00016522 507.77671026043686 45.363 0.30841 45.363 45.17 45.478 0 39 16 3 0 0 0 0.0082475 2 24654 24654;24770 92.653 27.418 1 45463000 48764 7213 32937 33691 56816;56817 56816 0.033097328607595955 QADPTKLEL 9 Unmodified _QADPTKLEL_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7;ENST00000523219.1_1_5:159833399-159834623:-|nuORF;ENST00000520841.1_1_5:159833399-159835410:-|nuORF ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.77685546875 2 507.776939 1013.53933 0.82153 0.00041715 -1.263 -0.0006413 -0.44143 -0.00022415 507.77629941402097 51.284 0.39158 45.635 45.397 45.789 -5.649 41 23 2 0 0 0 0.0087807 2 32276 32137;32276 106.94 14.449 1 59658000 48765 7213 32937 33691 56818;56819 56819 0.033097328607595955 QADTTRLEL 9 Unmodified _QADTTRLEL_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7 ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7772827148438 2 523.77747 1045.54039 0.054814 2.871E-05 -0.71256 -0.00037322 -0.65775 -0.00034451 523.7770214630136 40.743 0.23261 40.743 40.584 40.817 0 28 13 3 0 0 0 0.025842 1 21873 21873 57.722 24.936 1 11758000 48766 5088 32938 33692 56820 56820 0.019439472296653548 QADTTRLEL 9 Unmodified _QADTTRLEL_ 0 0 0 ENSG00000138686|ENST00000264499|BBS7;nc|ENSG00000138686|Q8IWZ6-2|BBS7 ENSG00000138686|ENST00000264499|BBS7 ENSG00000138686|ENST00000264499|BBS7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.2777709960938 2 523.77747 1045.54039 0.75096 0.00039334 1.9042 0.00099735 2.6551 0.0013907 523.7774980749424 45.56 0.44031 40.605 40.392 40.832 -4.9549 44 29 2 0 0 0 0.067365 1 27940 27940 41.956 7.7682 1 28247000 48767 5088 32938 33692 56821 56821 0.019439472296653548 QADWIEPAC 9 Unmodified _QADWIEPAC_ 0 0 0 ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7252807617188 2 516.726392 1031.43823 0.38685 0.0001999 -1.866 -0.00096422 -1.4792 -0.00076433 516.7252456085433 31.396 0.22711 31.396 31.255 31.482 0 19 10 2 0 0 0 0.51218 1 16344 16344 6.7232 0.96273 1 1530900 48768 4491 32939 33693 56822 56822 -0.07623042113596057 QAEAQQPTF 9 Unmodified _QAEAQQPTF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2428588867188 2 510.243264 1018.47197 -0.29027 -0.00014811 -0.29356 -0.00014979 -0.58383 -0.0002979 510.24306080980466 33.759 0.37509 33.759 33.572 33.947 0 62 20 4 0 0 0 0.0055767 2 17756 17651;17756 115.69 30.42 1 27767000 48769 16412 32940 33694 56823;56824 56824 -0.036522973501973865 QAEAQQPTF 9 Unmodified _QAEAQQPTF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 510.2412109375 2 510.243264 1018.47197 NaN NaN NaN NaN NaN NaN NaN 38.735 1 34.284 33.784 34.784 -4.4509 0 0 0 0.01136 1 22897 22897 107.19 38.082 1 48770 16412 32940 33694 56825 56825 -0.036522973501973865 QAEAQQPTF 9 Unmodified _QAEAQQPTF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 510.24267578125 2 510.243264 1018.47197 NaN NaN NaN NaN NaN NaN NaN 38.92 1 34.469 33.969 34.969 -4.4509 0 0 0 0.0084204 1 23028 23028 96.111 27.006 1 48771 16412 32940 33694 56826 56826 -0.036522973501973865 QAEEILQTY 9 Unmodified _QAEEILQTY_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7723388671875 2 547.771854 1093.52915 0.85833 0.00047017 -1.1905 -0.0006521 -0.33213 -0.00018193 548.2723515520547 57.717 0.37621 51.689 51.428 51.804 -6.0275 51 20 3 0 0 0 0.011968 2 36809 36809;36933 74.929 31.961 1 63211000 48772 3290;3289 32941 33695 56827;56828 56827 -0.01386874864465426 QAEEILQTYL 10 Unmodified _QAEEILQTYL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.3134765625 2 604.313886 1206.61322 -0.12879 -7.7832E-05 0.69534 0.0004202 0.56655 0.00034237 604.3143232342961 63.82 0.31497 63.82 63.659 63.974 0 29 12 3 0 0 0 0.67755 1 35669 35669 9.3831 0 1 3310600 48773 3290;3289 32942 33696 56829 56829 0.01817656232447007 QAEEKAHAF 9 Unmodified _QAEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.747314453125 2 515.751256 1029.48796 NaN NaN NaN NaN NaN NaN NaN 15.957 1 15.957 15.457 16.457 0 0 0 0 0.20153 1 7737 7737 30.637 15.798 1 48774 16412 32943 33697 56830 56830 -0.025605911132970505 QAEEKAHAF 9 Unmodified _QAEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2643432617188 2 515.751256 1029.48796 -0.41512 -0.0002141 -0.8358 -0.00043106 -1.2509 -0.00064516 515.7507901118703 15.805 0.20082 15.805 15.681 15.882 0 107 45 3 0 0 0 0.17718 1 7689 7689 20.454 8.8133 1 2483900 48775 16412 32943 33697 56831 56831 -0.025605911132970505 QAEEKAHAF 9 Unmodified _QAEEKAHAF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7511596679688 2 515.751256 1029.48796 0.13249 6.833E-05 0.84332 0.00043494 0.97581 0.00050327 515.7517553376147 16.518 0.24226 13.961 13.832 14.075 -2.557 88 36 3 0 0 0 0.011968 2 8503 8503;8606 74.929 49.53 1 10783000 48776 16412 32943 33697 56832;56833 56832 -0.025605911132970505 QAEGKLISVEY 11 Unmodified _QAEGKLISVEY_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.82763671875 2 618.82716 1235.63977 0.34087 0.00021094 -0.59374 -0.00036742 -0.25287 -0.00015648 618.8266961924429 46.83 0.28169 46.83 46.698 46.98 0 32 13 3 0 0 0 1.2421E-11 1 25582 25582 128.87 57.162 1 20911000 48777 8680 32944 33698 56834 56834 0.03137345123764135 QAEGKLISVEY 11 Unmodified _QAEGKLISVEY_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8272705078125 2 618.82716 1235.63977 0.78028 0.00048286 -0.0062697 -3.8799E-06 0.77401 0.00047898 618.8270547565111 52.922 0.34046 47.118 47.009 47.35 -5.8042 27 18 2 0 0 0 2.0747999999999997E-28 1 33403 33403 161.44 80.769 1 27097000 48778 8680 32944 33698 56835 56835 0.03137345123764135 QAEGSLTVY 9 Unmodified _QAEGSLTVY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000584080.5_1_17:26887110-26897972:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2399597167969 2 484.24019 966.465826 0.38364 0.00018578 0.31727 0.00015363 0.70091 0.00033941 484.2402355247962 42.222 0.29523 42.222 42.105 42.401 0 23 14 2 0 0 0 0.013041 1 22833 22833 71.922 13.243 1 5817700 48779 1454 32945 33699 56836 56836 -0.018748155817320367 QAEGSLTVY 9 Unmodified _QAEGSLTVY_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000584080.5_1_17:26887110-26897972:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 967.4720458984375 1 967.473103 966.465826 0.28944 0.00028003 -0.41403 -0.00040057 -0.12459 -0.00012054 967.4723476691894 42.213 0.18254 42.213 42.179 42.362 0 13 8 2 0 0 0 0.028475 1 22861 22861 56.177 12.319 1 2991100 48780 1454 32945 33699 56837 56837 -0.018748155817320367 QAELICRFEVP 11 Unmodified _QAELICRFEVP_ 0 0 0 REV__ENSG00000143061|ENST00000369486|IGSF3 REV__ENSG00000143061|ENST00000369486|IGSF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.3395385742188 2 652.837005 1303.65946 1.8534 0.00121 -1.0343 -0.00067525 0.81907 0.00053472 652.8362678237706 92.502 0.39256 92.532 92.362 92.755 0.030197 39 14 3 0 0 0 0.5229 1 51404 51404 15.248 15.248 1 35002000 + 48781 20601 32946 33700 56838 56838 0.019773978628563782 QAEPLLDACRL 11 Unmodified _QAEPLLDACRL_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442-3|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-6|PKD1L2;nc|ENSG00000166473|Q7Z442-4|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2167053222656 3 410.216662 1227.62816 0.90529 0.00037137 0.71147 0.00029186 1.6168 0.00066322 410.2169840782997 51.471 0.46677 45.822 45.605 46.071 -5.649 71 28 3 0 0 0 0.58219 1 32561 32561 6.6235 2.2173 1 326140000 48782 16354 32947 33701 56839 56839 0.02344824828765013 QAESIVVHTY 10 Unmodified _QAESIVVHTY_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7935791015625 2 573.793121 1145.57169 0.53397 0.00030639 -0.2944 -0.00016892 0.23957 0.00013746 573.7926444345017 37.057 0.24333 37.057 36.936 37.18 0 27 11 3 0 0 0 0.0032515 1 19682 19682 136.33 136.33 1 3598600 48783 3762;16168 32948 33702 56840 56840 0.0047252026377009315 QAESTALKY 9 Unmodified _QAESTALKY_ 0 0 0 ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233201010-233201337:+|nuORF ENSG00000144535|ENST00000325385|DIS3L2 ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2602844238281 2 505.761289 1009.50803 -0.28694 -0.00014512 -2.8964 -0.0014649 -3.1834 -0.00161 505.7609336131764 27.438 0.76928 27.438 26.952 27.721 0 48 37 2 0 0 0 0.20428 1 14108 14108 22.736 11.096 1 9561200 48784 5616 32949 33703 56841 56841 0.0036515982666287528 QAESTALKY 9 Unmodified _QAESTALKY_ 0 0 0 ENSG00000144535|ENST00000325385|DIS3L2;ENST00000433430.5_1_2:233201010-233201337:+|nuORF ENSG00000144535|ENST00000325385|DIS3L2 ENSG00000144535|ENST00000325385|DIS3L2 MSMS AL20221201_MKP_PDAC_01 4 505.7615661621094 2 505.761289 1009.50803 NaN NaN NaN NaN NaN NaN NaN 30.636 1 27.139 26.639 27.639 -3.497 0 0 0 0.014214 1 17310 17310 86.332 28.61 1 48785 5616 32949 33703 56842 56842 0.0036515982666287528 QAESWTTSYT 10 Unmodified _QAESWTTSYT_ 0 0 0 REV__nc|ENSG00000196504|O75400-2|PRPF40A REV__nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.256591796875 2 587.256568 1172.49858 -0.48003 -0.0002819 -0.41682 -0.00024478 -0.89685 -0.00052668 587.256328188249 26.184 0.44094 26.184 26.047 26.488 0 67 23 4 0 0 0 0.27276 1 13514 13514 29.082 16.039 1 20656000 + 48786 23836 32950 33704 56843 56843 -0.08076653249509036 QAETWEPYL 9 Unmodified _QAETWEPYL_ 0 0 0 REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF REV__ENST00000550590.5_1_12:56352149-56359825:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5121765136719 3 379.513473 1135.51859 NaN NaN NaN NaN NaN NaN NaN 34.027 1 34.027 33.527 34.527 0 0 0 0 0.82739 1 17894 17894 2.4985 0.59211 1 + 48787 28704 32951 33705 56844 56844 -0.04374857518905628 QAFDFEDDHF 10 Unmodified _QAFDFEDDHF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.7559814453125 2 635.754192 1269.49383 0.36605 0.00023272 -0.086925 -5.5263E-05 0.27913 0.00017746 635.7541517387923 60.778 0.25758 60.778 60.695 60.953 0 15 10 2 0 0 0 0.02987 1 33902 33902 68.081 55.84 1 1387400 48788 1235 32952 33706 56845 56845 -0.13013537392293983 QAFELDQQAF 10 Unmodified _QAFELDQQAF_ 0 0 0 nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 nc|ENSG00000178996|Q96RF0-3|SNX18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.783935546875 2 598.782753 1195.55095 -0.045758 -2.7399E-05 1.0682 0.00063962 1.0224 0.00061222 598.7833186721937 65.647 0.34988 65.647 65.475 65.824 0 36 15 4 0 0 0 0.0072789 1 36568 36568 92.653 46.632 1 2686800 48789 8795 32953 33707 56846 56846 -0.03900070115901144 QAFEQALEF 9 Unmodified _QAFEQALEF_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENST00000466653.1_1_1:235392530-235490234:-|nuORF nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7611694335938 2 541.761289 1081.50803 -0.01763 -9.5513E-06 0.20548 0.00011132 0.18785 0.00010177 541.7614070567599 71.687 0.48306 71.687 71.421 71.904 0 39 20 2 0 0 0 0.0082661 2 39875 39875;39972 92.491 61.855 1 30565000 48790 756 32954 33708 56847;56848 56847 -0.02946840173331111 QAFEQALEF 9 Unmodified _QAFEQALEF_ 0 0 0 nc|ENSG00000054267|Q4LE39-2|ARID4B;ENSG00000054267|ENST00000264183|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;ENST00000466653.1_1_1:235392530-235490234:-|nuORF nc|ENSG00000054267|Q4LE39-2|ARID4B nc|ENSG00000054267|Q4LE39-2|ARID4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7625732421875 2 541.761289 1081.50803 1.2029 0.0006517 1.0213 0.00055328 2.2242 0.001205 541.7619447864544 79.649 0.51035 73.473 73.167 73.677 -6.1757 83 30 3 0 0 0 0.009483 2 52212 52070;52212 81.89 51.254 1 70568000 48791 756 32954 33708 56849;56850 56850 -0.02946840173331111 QAFESSQKY 9 Unmodified _QAFESSQKY_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2560424804688 2 544.256371 1086.49819 -0.18983 -0.00010332 0.029643 1.6133E-05 -0.16019 -8.7182E-05 544.2565097277426 22.891 0.30139 22.891 22.734 23.036 0 58 16 4 0 0 0 0.0059585 2 11611 11611;11706 114.65 64.716 1 18373000 48792 1550 32955 33709 56851;56852 56851 -0.04160028178716857 QAFESSQKY 9 Unmodified _QAFESSQKY_ 0 0 0 nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2560424804688 2 544.256371 1086.49819 -0.24113 -0.00013123 -0.65993 -0.00035917 -0.90105 -0.0004904 544.255869512496 25.741 0.31894 22.79 22.594 22.913 -2.9511 51 19 3 0 0 0 0.0047067 2 14153 14040;14153 118.07 70.32 1 38175000 48793 1550 32955 33709 56853;56854 56854 -0.04160028178716857 QAFFLHTTY 9 Unmodified _QAFFLHTTY_ 0 0 0 ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENST00000467925.5_1_2:42935083-42946163:+|nuORF ENSG00000057935|ENST00000405094|MTA3 ENSG00000057935|ENST00000405094|MTA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2767944335938 2 564.279649 1126.54475 NaN NaN NaN NaN NaN NaN NaN 58.206 1 57.717 57.217 58.217 -0.48974 0 0 0 0.12337 1 31643 31643 39.957 20.7 1 48794 798 32956 33710 56855 56855 -0.01346543556769575 QAFGCSVQPCK 11 Unmodified _QAFGCSVQPCK_ 0 0 0 REV__ENST00000375398.6_1_10:29923835-29923874:-|nuORF REV__ENST00000375398.6_1_10:29923835-29923874:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8465881347656 3 389.847693 1166.52125 NaN NaN NaN NaN NaN NaN NaN 21.957 1 21.98 21.48 22.48 0.022896 0 0 0 0.94184 1 11157 11157 0.40827 0 1 + 48795 26204 32957 33711 56856 56856 -0.055350486572478985 QAFGEKITM 9 Oxidation (M) _QAFGEKITM(Oxidation (M))_ QAFGEKITM(1) QAFGEKITM(64) 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7576293945312 2 520.757692 1039.50083 -0.031457 -1.6381E-05 -0.43267 -0.00022532 -0.46413 -0.0002417 520.7582239026169 29.212 0.42781 29.212 28.963 29.391 0 64 20 5 0 0 0 0.01958 1 15114 15114 63.961 33.736 1 26191000 48796 4949 32958 33712 56857 56857 901 -0.017338960454253538 QAFGEKITM 9 Oxidation (M) _QAFGEKITM(Oxidation (M))_ QAFGEKITM(1) QAFGEKITM(64) 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7587280273438 2 520.757692 1039.50083 1.003 0.00052232 -1.2348 -0.00064301 -0.23176 -0.00012069 520.7575764118125 33.332 0.68303 29.347 29.192 29.875 -3.9853 53 38 2 0 0 0 0.01958 1 19065 19065 63.961 40.812 1 38406000 48797 4949 32958 33712 56858 56858 901 -0.017338960454253538 QAFGEKITM 9 Unmodified _QAFGEKITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000519115.5_1_8:59477592-59490768:+|nuORF;ENST00000523441.1_1_8:59490633-59492419:+|nuORF;ENST00000424643.3_1_8:70855645-70855750:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7597045898438 2 512.760235 1023.50592 0.90345 0.00046325 -3.5061 -0.0017978 -2.6026 -0.0013345 512.7596145051245 48.47 0.43295 43.108 42.86 43.293 -5.3617 47 25 3 0 0 0 0.040683 1 30250 30250 49.554 17.249 1 53536000 48798 4949 32958 33713 56859 56859 -0.0048959218280515415 QAFGSGNNSY 10 Unmodified _QAFGSGNNSY_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7228393554688 2 522.722695 1043.43084 0.041204 2.1538E-05 1.0407 0.00054398 1.0819 0.00056552 522.7229978986655 29.342 0.30928 29.342 29.142 29.451 0 40 14 4 0 0 0 0.1942 1 15172 15172 34.402 21.87 1 4708000 48799 3556 32959 33714 56860 56860 -0.0891405838965511 QAFGSGNNSY 10 Unmodified _QAFGSGNNSY_ 0 0 0 ENSG00000120948|ENST00000240185|TARDBP;nc|ENSG00000120948|Q13148-4|TARDBP ENSG00000120948|ENST00000240185|TARDBP ENSG00000120948|ENST00000240185|TARDBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7229614257812 2 522.722695 1043.43084 1.3033 0.00068128 0.081709 4.2711E-05 1.385 0.00072399 522.7226741397576 34.075 0.37331 30.089 29.914 30.287 -3.9853 38 20 2 0 0 0 0.0015761 2 19560 19560;19682 110.67 68.835 1 17244000 48800 3556 32959 33714 56861;56862 56861 -0.0891405838965511 QAFIDLHSA 9 Unmodified _QAFIDLHSA_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2565612792969 2 501.256174 1000.49779 0.72422 0.00036302 -0.32767 -0.00016425 0.39655 0.00019877 501.2561213479016 47.924 0.36456 47.924 47.686 48.051 0 48 17 4 0 0 0 0.00856 1 26302 26302 100.37 15.015 1 14624000 48801 8367 32960 33715 56863 56863 -0.002434031079133092 QAFIDLHSA 9 Unmodified _QAFIDLHSA_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2566528320312 2 501.256174 1000.49779 0.23114 0.00011586 -0.074954 -3.7571E-05 0.15619 7.8291E-05 501.25626880143915 48.119 0.28979 47.767 47.615 47.905 -0.3526 34 14 3 0 0 0 0.00856 1 25825 25825 100.37 15.015 1 5842600 48802 8367 32960 33715 56864 56864 -0.002434031079133092 QAFIDLHSA 9 Unmodified _QAFIDLHSA_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2569274902344 2 501.256174 1000.49779 1.3584 0.00068092 -0.15668 -7.8536E-05 1.2017 0.00060238 501.2562694703616 54.107 0.40973 48.241 47.991 48.401 -5.8653 41 23 2 0 0 0 0.008678 2 34173 34173;34307 88.904 14.481 1 27787000 48803 8367 32960 33715 56865;56866 56865 -0.002434031079133092 QAFIHNSLY 9 Unmodified _QAFIHNSLY_ 0 0 0 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 ENSG00000225921|ENST00000451315|NOL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7781372070312 2 546.777274 1091.53999 0.33933 0.00018554 0.36109 0.00019743 0.70041 0.00038297 546.7771769759299 46.309 0.19133 45.973 45.881 46.073 -0.33664 16 9 2 0 0 0 0.047196 1 24771 24771 46.021 2.1627 1 7599800 48804 10586 32961 33716 56867 56867 -0.002114276995371256 QAFKFCLQY 9 Carbamidomethyl (C) _QAFKFC(Carbamidomethyl (C))LQY_ QAFKFC(1)LQY QAFKFC(140)LQY 0 1 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.794189453125 2 602.794609 1203.57467 0.34572 0.0002084 0.13209 7.9624E-05 0.47781 0.00028802 602.7947227610197 74.041 1.6398 67.865 66.877 68.516 -6.1757 154 82 3 0 0 0 0.0014543 8 48014 47898;48014;48126;48244;48359;48479;48599;48723 136.33 109.45 1 39979000 48805 2503 32962 33717 56868;56869;56870;56871;56872;56873;56874;56875 56869 251 -0.018979278830784096 QAFKFCLQY 9 Carbamidomethyl (C) _QAFKFC(Carbamidomethyl (C))LQY_ QAFKFC(1)LQY QAFKFC(75)LQY 0 1 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MSMS AL20221201_MKP_PDAC_01 4 602.796875 2 602.794609 1203.57467 NaN NaN NaN NaN NaN NaN NaN 73.031 1 66.855 66.355 67.355 -6.1757 0 0 0 0.022863 1 47766 47766 74.929 40.527 1 48806 2503 32962 33717 56876 56876 251 -0.018979278830784096 QAFLEAVQF 9 Unmodified _QAFLEAVQF_ 0 0 0 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 ENSG00000135842|ENST00000367511|NIBAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7744140625 2 526.7742 1051.53385 NaN NaN NaN NaN NaN NaN NaN 82.41 1 81.915 81.415 82.415 -0.4952 0 0 0 0.36554 1 45116 45116 21.747 0 1 48807 4747 32963 33718 56877 56877 0.010140540689462796 QAFPGGHSM 9 Oxidation (M) _QAFPGGHSM(Oxidation (M))_ QAFPGGHSM(1) QAFPGGHSM(61) 0 0 1 nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000588713.1_1_17:33321324-33323247:+|nuORF nc|ENSG00000005156|P49916-4|LIG3 nc|ENSG00000005156|P49916-4|LIG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2064819335938 2 474.205627 946.396701 1.1498 0.00054525 0.10748 5.0966E-05 1.2573 0.00059622 474.2056451084985 20.785 0.44292 18.092 17.801 18.244 -2.693 49 27 2 0 0 0 0.022193 2 11099 10986;11099 61.357 20.909 1 2674900 48808 298 32964 33719 56878;56879 56879 28 -0.07864178082240869 QAFPGGHSM 9 Unmodified _QAFPGGHSM_ 0 0 0 nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000588713.1_1_17:33321324-33323247:+|nuORF nc|ENSG00000005156|P49916-4|LIG3 nc|ENSG00000005156|P49916-4|LIG3 MSMS AL20221201_MKP_PDAC_01 4 466.2090759277344 2 466.20817 930.401786 NaN NaN NaN NaN NaN NaN NaN 31.925 1 28.23 27.73 28.73 -3.6958 0 0 0 0.056448 1 18132 18132 54.774 20.671 1 48809 298 32964 33720 56880 56880 -0.06619874219632038 QAFQERLNSY 10 Unmodified _QAFQERLNSY_ 0 0 0 ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 ENSG00000113569|ENST00000231498|NUP155 ENSG00000113569|ENST00000231498|NUP155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.3074340820312 2 628.306926 1254.5993 0.29549 0.00018566 0.7058 0.00044346 1.0013 0.00062912 628.307323515016 37.137 0.24073 37.137 36.997 37.238 0 29 11 3 0 0 0 0.0022709 1 19713 19713 107.1 70.593 1 4619100 48810 2976 32965 33721 56881 56881 -0.017815764760143793 QAFQERLNSY 10 Unmodified _QAFQERLNSY_ 0 0 0 ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155 ENSG00000113569|ENST00000231498|NUP155 ENSG00000113569|ENST00000231498|NUP155 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.305419921875 2 628.306926 1254.5993 0.52734 0.00033133 -0.5022 -0.00031554 0.025143 1.5798E-05 628.3060860480624 42.251 0.33136 37.567 37.39 37.721 -4.6846 33 20 2 0 0 0 7.3725E-11 2 25444 25444;25585 159.1 122.59 1 21536000 48811 2976 32965 33721 56882;56883 56882 -0.017815764760143793 QAFRDMNRF 9 Unmodified _QAFRDMNRF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5254821777344 3 395.52583 1183.55566 1.4068 0.00055643 -0.39009 -0.00015429 1.0167 0.00040214 395.52577655588476 37.357 0.38631 33.073 32.843 33.229 -4.2835 62 22 4 0 0 0 0.0086209 2 21842 21842;21960 73.196 49.176 1 22136000 48812 5401 32966 33722 56884;56885 56884 -0.028774644541499583 QAFSLQHAL 9 Unmodified _QAFSLQHAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7727661132812 2 507.771991 1013.52943 0.022722 1.1538E-05 0.8396 0.00042633 0.86232 0.00043786 507.77228705801787 53.095 0.26644 52.643 52.496 52.762 -0.45173 34 13 3 0 0 0 0.028475 1 28692 28692 56.177 18.203 1 11578000 48813 16188 32967 33723 56886 56886 0.023205896460240183 QAFSLQHAL 9 Unmodified _QAFSLQHAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.771991 1013.52943 0.38921 0.00019763 1.5373 0.00078061 1.9265 0.00097824 508.27402983548643 52.608 0.17178 52.608 52.53 52.702 0 -0.017427 0.00066225 NaN 56.177 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1076100 48814 16188 32967 33723 0.023205896460240183 QAFVELHEF 9 Unmodified _QAFVELHEF_ 0 0 0 nc|ENSG00000008256|O43739|CYTH3;ENSG00000008256|ENST00000350796|CYTH3;ENST00000478541.1_1_7:6210722-6217545:-|nuORF nc|ENSG00000008256|O43739|CYTH3 nc|ENSG00000008256|O43739|CYTH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2783203125 2 560.277106 1118.53966 0.74123 0.00041529 1.5698 0.00087953 2.311 0.0012948 560.2778425290791 60.097 0.31103 60.097 59.943 60.254 0 38 13 4 0 0 0 0.012668 1 33517 33517 81.613 48.827 1 18648000 48815 380 32968 33724 56887 56887 -0.014868474193917791 QAFVELHEF 9 Unmodified _QAFVELHEF_ 0 0 0 nc|ENSG00000008256|O43739|CYTH3;ENSG00000008256|ENST00000350796|CYTH3;ENST00000478541.1_1_7:6210722-6217545:-|nuORF nc|ENSG00000008256|O43739|CYTH3 nc|ENSG00000008256|O43739|CYTH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2764282226562 2 560.277106 1118.53966 0.090561 5.0739E-05 2.0927 0.0011725 2.1832 0.0012232 560.2766535517832 60.612 0.17967 60.123 60.03 60.21 -0.48932 18 8 4 0 0 0 0.044296 1 33010 33010 52.268 12.311 1 10577000 48816 380 32968 33724 56888 56888 -0.014868474193917791 QAGAEILTY 9 Unmodified _QAGAEILTY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4960327148438 1 965.493838 964.486562 -0.21324 -0.00020588 -0.93239 -0.00090021 -1.1456 -0.0011061 965.4928421007615 52.014 0.33316 52.014 51.842 52.175 0 24 14 2 0 0 0 0.0036082 2 28709 28709;28830 123.45 27.34 1 18553000 48817 16306 32969 33725 56889;56890 56889 0.002897747979432097 QAGAEILTY 9 Unmodified _QAGAEILTY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2498168945312 2 483.250557 964.486562 -0.086442 -4.1773E-05 -1.3745 -0.00066421 -1.4609 -0.00070598 483.2499898186638 52 0.46815 52 51.908 52.376 0 38 20 3 0 0 0 0.0082485 1 28742 28742 96.285 21.862 1 15584000 48818 16306 32969 33725 56891 56891 0.002897747979432097 QAGAEILTY 9 Unmodified _QAGAEILTY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.4938354492188 1 965.493838 964.486562 0.78624 0.00075911 -0.57238 -0.00055263 0.21386 0.00020648 965.4928795258421 59.795 0.44973 53.68 53.515 53.964 -6.1147 47 25 2 0 0 0 0.0036082 2 38618 38486;38618 123.45 38.094 1 49520000 48819 16306 32969 33725 56892;56893 56893 0.002897747979432097 QAGAEILTY 9 Unmodified _QAGAEILTY_ 0 0 0 nc|ENSG00000158793|Q86X76-3|NIT1;nc|ENSG00000158793|Q86X76-5|NIT1;nc|ENSG00000158793|Q86X76-2|NIT1;nc|ENSG00000158793|Q86X76-4|NIT1;ENSG00000158793|ENST00000368009|NIT1;ENST00000485594.1_1_1:161089027-161090552:+|nuORF nc|ENSG00000158793|Q86X76-3|NIT1 nc|ENSG00000158793|Q86X76-3|NIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2508850097656 2 483.250557 964.486562 0.98709 0.00047701 -0.41276 -0.00019947 0.57433 0.00027755 483.25021859901807 59.818 0.54782 53.703 53.452 54 -6.1147 78 30 3 0 0 0 0.070838 1 38487 38487 39.957 1.7818 1 140690000 48820 16306 32969 33725 56894 56894 0.002897747979432097 QAGDPVARY 9 Unmodified _QAGDPVARY_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7458801269531 2 488.745973 975.477394 NaN NaN NaN NaN NaN NaN NaN 24.428 1 24.428 23.928 24.928 0 0 0 0 0.83329 1 12485 12485 3.5965 1.019 1 48821 1712 32970 33726 56895 56895 -0.011325737677225334 QAGKLAPA 8 Unmodified _QAGKLAPA_ 0 0 0 ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2250671386719 2 378.224146 754.433738 2.0593 0.0007789 0.23551 8.9074E-05 2.2949 0.00086797 378.2241469510015 105.27 0.16293 99.097 99.019 99.182 -6.1757 82 38 3 0 0 0 0.80975 1 70486 70486 0.79363 0 1 212700000 48822 7816 32971 33727 56896 56896 0.046698615258037535 QAGKPIVS 8 Unmodified _QAGKPIVS_ 0 0 0 REV__ENST00000527065.1_1_11:104915107-104915377:-|nuORF REV__ENST00000527065.1_1_11:104915107-104915377:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2388610839844 2 400.237253 798.459953 1.6755 0.00067062 1.0866 0.00043488 2.7621 0.0011055 400.2376456585838 108.29 0.355 102.12 102.01 102.37 -6.1757 94 68 2 0 0 0 0.80992 1 72341 72341 0.69038 0 1 3318900 + 48823 20262 32972 33728 56897 56897 0.05266130697293647 QAGLKESSHL 10 Unmodified _QAGLKESSHL_ 0 0 0 ENST00000557238.5_1_14:47341050-47530490:-|nuORF ENST00000557238.5_1_14:47341050-47530490:-|nuORF ENST00000557238.5_1_14:47341050-47530490:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.2859497070312 2 535.285463 1068.55637 NaN NaN NaN NaN NaN NaN NaN 32.798 1 28.942 28.442 29.442 -3.8562 0 0 0 0.73227 1 18735 18735 15.248 2.206 1 48824 15253 32973 33729 56898 56898 0.024836534665837462 QAGMLDEP 8 Unmodified _QAGMLDEP_ 0 0 0 REV__ENST00000558221.1_1_15:91383052-91384515:+|nuORF REV__ENST00000558221.1_1_15:91383052-91384515:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 861.3886108398438 1 860.381845 859.374568 0.47986 0.00041286 0.81383 0.00070021 1.2937 0.0011131 860.3824461844274 38.772 0.22056 38.772 38.66 38.88 0 17 9 2 0 0 0 0.80722 1 20700 20700 2.3027 0 1 1663700 + 48825 28798 32974 33730 56899 56899 -0.0607440255067786 QAGPLPLSY 9 Unmodified _QAGPLPLSY_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2546691894531 2 473.255643 944.496732 NaN NaN NaN NaN NaN NaN NaN 63.407 1 63.407 62.907 63.907 0 0 0 0 0.071041 1 35368 35368 50.855 18.738 1 48826 3104 32975 33731 56900 56900 0.022263825231902956 QAGPLPLSY 9 Unmodified _QAGPLPLSY_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 945.50341796875 1 945.504009 944.496732 0.44065 0.00041663 -1.3248 -0.0012526 -0.88416 -0.00083598 945.5024194033634 63.941 0.31642 63.456 63.296 63.613 -0.48512 28 17 2 0 0 0 0.0044708 1 34851 34851 118.89 54.658 1 5208200 48827 3104 32975 33731 56901 56901 0.022263825231902956 QAGPLPLSY 9 Unmodified _QAGPLPLSY_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2552490234375 2 473.255643 944.496732 NaN NaN NaN NaN NaN NaN NaN 63.938 1 63.453 62.953 63.953 -0.48512 0 0 0 0.33856 1 34877 34877 23.148 3.7094 1 48828 3104 32975 33731 56902 56902 0.022263825231902956 QAGPLPLSY 9 Unmodified _QAGPLPLSY_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 945.5047607421875 1 945.504009 944.496732 0.40774 0.00038552 1.0768 0.0010181 1.4845 0.0014036 945.50511761822 70.546 0.46155 64.37 64.134 64.596 -6.1757 38 24 2 0 0 0 0.0038489 2 46002 46002;46128 122.18 54.098 1 28587000 48829 3104 32975 33731 56903;56904 56903 0.022263825231902956 QAGPVVNTHM 10 Oxidation (M) _QAGPVVNTHM(Oxidation (M))_ QAGPVVNTHM(1) QAGPVVNTHM(53) 0 0 1 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2584228515625 2 535.258391 1068.50223 1.0916 0.00058428 -0.77236 -0.00041341 0.31924 0.00017087 535.2583398581969 21.685 0.25849 18.95 18.813 19.072 -2.7348 21 13 2 0 0 0 0.06987 1 11622 11622 53.404 34.147 1 3188000 48830 5498 32976 33732 56905 56905 1011 -0.029282619566629364 QAHAQVTWY 9 Unmodified _QAHAQVTWY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2648315429688 2 552.267073 1102.51959 0.1802 9.9521E-05 -2.6533 -0.0014653 -2.473 -0.0013658 552.2664617157085 41.256 0.22615 40.953 40.82 41.047 -0.30304 16 10 2 0 0 0 0.19361 1 21865 21865 32.305 18.798 1 2497900 48831 5448 32977 33733 56906 56906 -0.027565983593376586 QAHAQVTWY 9 Unmodified _QAHAQVTWY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS AL20221201_MKP_PDAC_01 4 552.2647094726562 2 552.267073 1102.51959 NaN NaN NaN NaN NaN NaN NaN 45.177 1 40.325 39.825 40.825 -4.852 0 0 0 0.090869 1 27688 27688 58.679 16.584 1 48832 5448 32977 33733 56907 56907 -0.027565983593376586 QAHKFVERY 9 Unmodified _QAHKFVERY_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5424194335938 3 393.208607 1176.60399 -0.59743 -0.00023492 -0.4436 -0.00017443 -1.041 -0.00040935 393.2082611892439 17.612 0.14245 17.612 17.549 17.691 0 30 22 3 0 0 0 0.57331 1 8678 8678 1.7423 0.54893 1 541520 48833 6277 32978 33734 56908 56908 0.022753524574227413 QAHKFVERY 9 Unmodified _QAHKFVERY_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.20849609375 3 393.208607 1176.60399 -0.53616 -0.00021082 0.65978 0.00025943 0.12362 4.8607E-05 393.20875036898474 17.716 0.030083 17.73 17.725 17.755 0.013866 6 4 2 0 0 0 0.57331 1 8840 8840 1.7423 0.54893 1 311990 48834 6277 32978 33734 56909 56909 0.022753524574227413 QAHLKVDVY 9 Unmodified _QAHLKVDVY_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.196533203125 3 358.197708 1071.57129 -0.53428 -0.00019138 0.89503 0.0003206 0.36075 0.00012922 358.1978892282663 31.891 0.38823 31.891 31.758 32.146 0 44 18 4 0 0 0 0.4887 1 16603 16603 8.1555 3.2585 1 8534900 48835 8065 32979 33735 56910 56910 0.03837145334568959 QAHLKVDVY 9 Unmodified _QAHLKVDVY_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7923583984375 2 536.792924 1071.57129 -0.34394 -0.00018462 0.28335 0.0001521 -0.060589 -3.2524E-05 536.7931352292428 31.925 0.16272 31.925 31.799 31.961 0 14 7 2 0 0 0 0.011739 1 16635 16635 92.653 58.252 1 1643400 48836 8065 32979 33735 56911 56911 0.03837145334568959 QAHLKVDVY 9 Unmodified _QAHLKVDVY_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1982727050781 3 358.197708 1071.57129 1.6881 0.00060466 -0.36787 -0.00013177 1.3202 0.00047289 358.1975150299234 35.704 0.47628 31.512 31.218 31.694 -4.1928 65 29 3 0 0 0 0.34134 1 20713 20713 15.248 6.2722 1 31506000 48837 8065 32979 33735 56912 56912 0.03837145334568959 QAHLKVDVY 9 Unmodified _QAHLKVDVY_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.2591552734375 2 536.792924 1071.57129 0.9025 0.00048446 -0.39775 -0.00021351 0.50475 0.00027094 536.7926493968805 35.688 0.29475 31.495 31.318 31.613 -4.1928 29 18 2 0 0 0 0.07631 1 20731 20731 38.176 16.639 1 8772600 48838 8065 32979 33735 56913 56913 0.03837145334568959 QAHNLTIEM 9 Oxidation (M) _QAHNLTIEM(Oxidation (M))_ QAHNLTIEM(1) QAHNLTIEM(85) 0 0 1 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7583618164062 2 536.758223 1071.50189 -0.41871 -0.00022475 0.14659 7.8681E-05 -0.27213 -0.00014607 536.7582841052623 27.065 0.2441 27.065 26.93 27.174 0 28 11 3 0 0 0 0.0090948 1 13893 13893 85.272 26.593 1 9783500 48839 4978 32980 33736 56914 56914 910 -0.030996816765082258 QAHNLTIEM 9 Oxidation (M) _QAHNLTIEM(Oxidation (M))_ QAHNLTIEM(1) QAHNLTIEM(110) 0 0 1 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7577514648438 2 536.758223 1071.50189 0.86651 0.00046511 -0.2166 -0.00011626 0.64991 0.00034885 536.7581488917308 30.481 0.46294 26.984 26.631 27.094 -3.497 33 22 2 0 0 0 0.0071894 2 17089 17089;17225 111.29 36.358 1 15347000 48840 4978 32980 33736 56915;56916 56915 910 -0.030996816765082258 QAHVDFEAM 9 Oxidation (M) _QAHVDFEAM(Oxidation (M))_ QAHVDFEAM(1) QAHVDFEAM(96) 0 0 1 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 ENSG00000105248|ENST00000262962|YJU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2276611328125 2 532.229299 1062.44404 -0.51565 -0.00027444 0.61904 0.00032947 0.10339 5.5026E-05 532.2294930005195 28.177 0.20174 28.177 28.09 28.292 0 30 9 5 0 0 0 0.0082485 1 14537 14537 96.285 56.327 1 2200600 48841 2293 32981 33737 56917 56917 391 -0.08467943601954175 QAHWSNINDVY 11 Unmodified _QAHWSNINDVY_ 0 0 0 ENSG00000042429|ENST00000251871|MED17 ENSG00000042429|ENST00000251871|MED17 ENSG00000042429|ENST00000251871|MED17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.8106689453125 2 673.809833 1345.60511 0.88022 0.0005931 1.4209 0.00095743 2.3011 0.0015505 673.8100925123898 50.953 0.14789 45.304 45.232 45.38 -5.649 12 8 2 0 0 0 2.947E-06 1 32037 32037 110.55 81.471 1 13883000 48842 662 32982 33738 56918 56918 -0.05386477964339065 QAHYNMYPQNP 11 Unmodified _QAHYNMYPQNP_ 0 0 0 ENSG00000173757|ENST00000293328|STAT5B ENSG00000173757|ENST00000293328|STAT5B ENSG00000173757|ENST00000293328|STAT5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2344665527344 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 18.48 1 18.503 18.003 19.003 0.023106 0 0 0 0.94307 1 9270 9270 0.08335 0.010087 1 48843 8360 32983 33739 56919 56919 -0.08405820353459603 QAIAAIELS 9 Unmodified _QAIAAIELS_ 0 0 0 ENST00000322315.5_1_19:3590178-3593283:+|nuORF ENST00000322315.5_1_19:3590178-3593283:+|nuORF ENST00000322315.5_1_19:3590178-3593283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 915.5147705078125 1 915.514573 914.507297 0.067379 6.1686E-05 1.5681 0.0014357 1.6355 0.0014973 915.5162782937134 63.698 0.25823 63.698 63.543 63.801 0 17 10 2 0 0 0 0.34999 1 35480 35480 14.838 0 1 983240 48844 11786 32984 33740 56920 56920 0.04662365177614447 QAIAIDKWYQ 10 Unmodified _QAIAIDKWYQ_ 0 0 0 REV__nc|ENSG00000133422|Q9Y6X9-2|MORC2 REV__nc|ENSG00000133422|Q9Y6X9-2|MORC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.3220825195312 2 618.324588 1234.63462 NaN NaN NaN NaN NaN NaN NaN 72.144 1 72.144 71.644 72.644 0 0 0 0 0.95103 1 40174 40174 5.7319 0.97584 1 + 48845 19923 32985 33741 56921 56921 0.02669086051787417 QAIECDQQE 9 Unmodified _QAIECDQQE_ 0 0 0 REV__nc|ENSG00000152492|Q8IVM0|CCDC50 REV__nc|ENSG00000152492|Q8IVM0|CCDC50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2230224609375 2 532.221671 1062.42879 0.71713 0.00038167 0.2376 0.00012646 0.95473 0.00050813 532.2224927945329 38.759 0.28998 38.759 38.639 38.929 0 22 12 2 0 0 0 0.34134 1 20702 20702 15.248 0.41021 1 8762900 + 48846 21123 32986 33742 56922 56922 -0.0999285518976194 QAIEDMVGY 9 Oxidation (M) _QAIEDM(Oxidation (M))VGY_ QAIEDM(1)VGY QAIEDM(74)VGY 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2319946289062 2 521.231507 1040.44846 0.78349 0.00040838 -0.57857 -0.00030157 0.20492 0.00010681 521.2313121389307 38.76 0.43481 38.76 38.577 39.012 0 60 19 4 0 0 0 0.012148 2 20666 20666;20777 74.423 44.25 1 148530000 48847 8355 32987 33743 56923;56924 56923 1410 -0.07014479179019872 QAIEDMVGY 9 Oxidation (M) _QAIEDM(Oxidation (M))VGY_ QAIEDM(1)VGY QAIEDM(82)VGY 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2323608398438 2 521.231507 1040.44846 0.8148 0.0004247 -2.2153 -0.0011547 -1.4004 -0.00072996 521.2321372166291 45.895 0.59872 40.94 40.656 41.255 -4.9549 121 39 4 0 0 0 0.0095811 3 28217 28079;28217;28359 81.613 47.511 1 104870000 48848 8355 32987 33743 56925;56926;56927 56926 1410 -0.07014479179019872 QAIEDMVGY 9 Oxidation (M) _QAIEDM(Oxidation (M))VGY_ 0 0 1 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.231507 1040.44846 0.12605 6.57E-05 -0.28165 -0.0001468 -0.1556 -8.1104E-05 521.2313882203705 38.806 0.16237 38.817 38.738 38.9 0.011456 0.028799 0.00022947 NaN 74.423 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2102600 48849 8355 32987 33743 1410 -0.07014479179019872 QAIEDMVGY 9 Unmodified _QAIEDMVGY_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS AL20221201_MKP_PDAC_01 4 513.2340698242188 2 513.23405 1024.45355 NaN NaN NaN NaN NaN NaN NaN 62.328 1 56.152 55.652 56.652 -6.1757 0 0 0 0.12337 1 40209 40209 39.957 25.119 1 48850 8355 32987 33744 56928 56928 -0.05770175316388304 QAIEDMVGY 9 Unmodified _QAIEDMVGY_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MSMS AL20221201_MKP_PDAC_01 4 513.234619140625 2 513.23405 1024.45355 NaN NaN NaN NaN NaN NaN NaN 62.511 1 56.335 55.835 56.835 -6.1757 0 0 0 0.04157 1 40337 40337 61.357 40.904 1 48851 8355 32987 33744 56929 56929 -0.05770175316388304 QAIEELYYF 9 Unmodified _QAIEELYYF_ 0 0 0 ENSG00000100926|ENST00000261789|TM9SF1;nc|ENSG00000100926|O15321-2|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 ENSG00000100926|ENST00000261789|TM9SF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.285888671875 2 588.284597 1174.55464 NaN NaN NaN NaN NaN NaN NaN 81.861 1 81.861 81.361 82.361 0 0 0 0 0.82739 1 45426 45426 4.3292 0.38484 1 48852 1892 32988 33745 56930 56930 -0.025654003420640947 QAIEFVNQY 9 Unmodified _QAIEFVNQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2744750976562 2 556.274564 1110.53457 0.44987 0.00025025 -0.054734 -3.0447E-05 0.39514 0.00021981 556.2745075496807 56.736 0.382 56.736 56.518 56.9 0 54 16 4 0 0 0 0.008678 2 31601 31487;31601 88.904 73.056 1 29546000 48853 357 32989 33746 56931;56932 56932 -0.01627151281991246 QAIEFVNQY 9 Unmodified _QAIEFVNQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.27490234375 2 556.274564 1110.53457 0.69582 0.00038707 -0.039792 -2.2135E-05 0.65603 0.00036493 556.2744545560338 57.389 0.29292 56.899 56.71 57.003 -0.48974 35 13 4 0 0 0 0.05447 1 31145 31145 43.858 29.952 1 4062500 48854 357 32989 33746 56933 56933 -0.01627151281991246 QAIELSPDNQY 11 Unmodified _QAIELSPDNQY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.3026733398438 2 639.304049 1276.59355 -0.63907 -0.00040856 0.80899 0.00051719 0.16992 0.00010863 639.3043997336968 48.539 0.34142 48.539 48.394 48.736 0 52 16 4 0 0 0 1.1447E-06 2 26596 26596;26712 103.82 83.409 1 27088000 48855 3479 32990 33747 56934;56935 56934 -0.033687197783365264 QAIELSPDNQY 11 Unmodified _QAIELSPDNQY_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3043212890625 2 639.304049 1276.59355 0.15825 0.00010117 -0.51001 -0.00032605 -0.35176 -0.00022488 639.303618577273 56.259 0.46457 50.282 50.02 50.485 -5.9769 57 26 3 0 0 0 9.8906E-21 2 35935 35797;35935 147.24 109.07 1 57575000 48856 3479 32990 33747 56936;56937 56937 -0.033687197783365264 QAIENAHVL 9 Unmodified _QAIENAHVL_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7694091796875 2 497.769448 993.524344 -0.20425 -0.00010167 -0.0054159 -2.6959E-06 -0.20966 -0.00010436 497.7694165799476 35.255 0.23186 35.255 35.11 35.342 0 18 11 2 0 0 0 0.013041 1 18606 18606 71.922 30.083 1 5473800 48857 4818 32991 33748 56938 56938 0.027322857834292336 QAIENQPSDLG 11 Unmodified _QAIENQPSDLG_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2852172851562 2 586.283117 1170.55168 NaN NaN NaN NaN NaN NaN NaN 61.869 1 61.869 61.369 62.369 0 0 0 0 0.68775 1 34494 34494 17.443 0.32975 1 + 48858 21053 32992 33749 56939 56939 -0.026772754668627385 QAIKELPQF 9 Unmodified _QAIKELPQF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.3025512695312 2 537.303124 1072.5917 NaN NaN NaN NaN NaN NaN NaN 52.618 1 52.618 52.118 53.118 0 0 0 0 0.032808 1 29127 29127 65.235 17.486 1 48859 7446 32993 33750 56940 56940 0.058303159943761784 QAIKELPQF 9 Unmodified _QAIKELPQF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3033447265625 2 537.303124 1072.5917 0.26344 0.00014155 -1.8675 -0.0010034 -1.604 -0.00086185 537.3030490964474 53.163 0.74374 52.711 52.179 52.922 -0.45173 79 37 4 0 0 0 0.0013034 2 28815 28703;28815 137.42 33.676 1 44650000 48860 7446 32993 33750 56941;56942 56942 0.058303159943761784 QAIKELPQF 9 Unmodified _QAIKELPQF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3045654296875 2 537.303124 1072.5917 NaN NaN NaN NaN NaN NaN NaN 52.81 1 52.746 52.246 53.246 -0.063423 0 0 0 0.019743 1 28621 28621 78.728 17.371 1 48861 7446 32993 33750 56943 56943 0.058303159943761784 QAIKELPQF 9 Unmodified _QAIKELPQF_ 0 0 0 nc|ENSG00000166181|Q9BZZ5-5|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-6|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 nc|ENSG00000166181|Q9BZZ5-5|API5 MSMS AL20221201_MKP_PDAC_01 4 537.3038330078125 2 537.303124 1072.5917 NaN NaN NaN NaN NaN NaN NaN 58.687 1 52.612 52.112 53.112 -6.0745 0 0 0 0.0052483 1 37619 37619 103.35 41.996 1 48862 7446 32993 33750 56944 56944 0.058303159943761784 QAINNAITY 9 Unmodified _QAINNAITY_ 0 0 0 ENST00000484040.1_1_2:213872086-213878776:-|nuORF;nc|ENSG00000030419|Q9UKS7-4|IKZF2;nc|ENSG00000030419|Q9UKS7-7|IKZF2;ENST00000412444.5_1_2:213872086-213945912:-|nuORF;nc|ENSG00000030419|Q9UKS7-2|IKZF2;ENSG00000030419|ENST00000434687|IKZF2 ENST00000484040.1_1_2:213872086-213878776:-|nuORF ENST00000484040.1_1_2:213872086-213878776:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2587280273438 2 504.261456 1006.50836 1.0987 0.00055406 -1.5979 -0.00080578 -0.4992 -0.00025173 504.2603792705725 42.883 0.1898 42.883 42.776 42.966 0 15 9 2 0 0 0 0.16785 1 23292 23292 23.148 10.617 1 2178000 48863 586 32994 33751 56945 56945 0.0053657954649679596 QAIQWILHY 9 Unmodified _QAIQWILHY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.3173828125 2 586.316566 1170.61858 0.49542 0.00029047 0.14524 8.5158E-05 0.64066 0.00037563 586.3167597202549 75.78 0.22618 75.302 75.169 75.395 -0.47714 16 9 2 0 0 0 0.094149 1 41470 41470 46.921 33.015 1 825580 48864 3021 32995 33752 56946 56946 0.04009424605578715 QAIQWILHY 9 Unmodified _QAIQWILHY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3170776367188 2 586.316566 1170.61858 0.46826 0.00027455 0.17998 0.00010552 0.64824 0.00038008 586.3166102352687 75.206 0.36487 75.252 75.087 75.452 0.045959 57 17 4 0 0 0 0.018301 2 41511 41407;41511 63.563 34.481 1 28066000 48865 3021 32995 33752 56947;56948 56948 0.04009424605578715 QAIQWILHY 9 Unmodified _QAIQWILHY_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3169555664062 2 586.316566 1170.61858 0.77645 0.00045524 -1.5149 -0.00088822 -0.73847 -0.00043298 586.3160368589637 91.287 0.92544 85.111 84.625 85.55 -6.1757 144 52 4 0 0 0 0.028475 3 60435 60223;60305;60435 63.563 34.481 1 51806000 48866 3021 32995 33752 56949;56950;56951 56951 0.04009424605578715 QAISAIQAL 9 Unmodified _QAISAIQAL_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;nc|ENSG00000160563|Q6P2C8-4|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7689819335938 2 457.768917 913.523281 0.90603 0.00041475 -0.040166 -1.8387E-05 0.86587 0.00039637 457.7688302094325 60.512 0.34996 60.512 60.345 60.695 0 37 15 3 0 0 0 0.0095811 2 33711 33711;33818 81.613 7.1903 1 4015900 48867 6734 32996 33753 56952;56953 56952 0.06306071414508096 QAISAIQAL 9 Unmodified _QAISAIQAL_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;nc|ENSG00000160563|Q6P2C8-4|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MSMS AL20221201_MKP_PDAC_01 4 457.7707824707031 2 457.768917 913.523281 NaN NaN NaN NaN NaN NaN NaN 67.848 1 61.672 61.172 62.172 -6.1757 0 0 0 0.04157 1 44231 44231 61.357 17.499 1 48868 6734 32996 33753 56954 56954 0.06306071414508096 QAITLVTQY 9 Unmodified _QAITLVTQY_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7877197265625 2 518.787307 1035.56006 0.24128 0.00012518 1.2784 0.00066324 1.5197 0.00078842 518.7875437518154 59.579 0.33783 59.088 58.876 59.214 -0.49079 47 15 4 0 0 0 0.028475 1 32382 32382 56.177 32.156 1 10511000 48869 2350 32997 33754 56955 56955 0.043703232404368464 QAITLVTQY 9 Unmodified _QAITLVTQY_ 0 0 0 ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 ENSG00000105671|ENST00000247003|DDX49 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7882080078125 2 518.787307 1035.56006 0.54241 0.00028139 1.4977 0.00077698 2.0401 0.0010584 518.7879979538671 66.651 0.59775 60.476 60.117 60.714 -6.1757 50 33 2 0 0 0 0.05447 1 43456 43456 43.858 3.901 1 52990000 48870 2350 32997 33754 56956 56956 0.043703232404368464 QAKDVIEEY 9 Unmodified _QAKDVIEEY_ 0 0 0 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7709350585938 2 547.771854 1093.52915 -0.25237 -0.00013824 -1.2248 -0.00067089 -1.4771 -0.00080913 547.7713205475072 33.542 0.34387 33.542 33.365 33.709 0 89 31 4 0 0 0 0.017075 2 17552 17552;17654 66.457 24.617 1 97805000 48871 2882 32998 33755 56957;56958 56957 -0.01386874864465426 QAKDVIEEY 9 Unmodified _QAKDVIEEY_ 0 0 0 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7719116210938 2 547.771854 1093.52915 0.92384 0.00050605 -0.44605 -0.00024433 0.47779 0.00026172 547.7715052356104 38.074 0.52899 33.705 33.419 33.948 -4.3689 92 31 4 0 0 0 0.0086722 3 22420 22294;22420;22550 88.954 42.933 1 141590000 48872 2882 32998 33755 56959;56960;56961 56960 -0.01386874864465426 QAKDVIEEY 9 Unmodified _QAKDVIEEY_ 0 0 0 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 ENSG00000112306|ENST00000230050|RPS12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 547.771854 1093.52915 0.045537 2.4944E-05 -0.61034 -0.00033433 -0.5648 -0.00030938 547.7724124657674 33.382 0.14128 33.411 33.295 33.437 0.028934 -0.14136 0.00027434 NaN 88.954 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 636080 48873 2882 32998 33755 -0.01386874864465426 QALAIQAVL 9 Unmodified _QALAIQAVL_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.786865234375 2 463.78711 925.559667 -0.68134 -0.000316 0.56599 0.0002625 -0.11535 -5.3498E-05 463.78754989225513 78.172 0.25316 77.69 77.591 77.844 -0.4826 17 10 2 0 0 0 0.070838 1 42817 42817 39.957 16.809 1 653270 48874 8230 32999 33756 56962 56962 0.09390948311227021 QALALIELY 9 Unmodified _QALALIELY_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000168710|O43865-2|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.3002319335938 2 517.30005 1032.58555 0.30136 0.00015589 0.49205 0.00025454 0.79341 0.00041043 517.3002564667682 91.144 0.24243 91.144 91.028 91.271 0 19 12 2 0 0 0 0.39863 1 50401 50401 12.532 8.2023 1 491780 48875 6587;7793 33000 33757 56963 56963 0.07055797762859584 QALALIELY 9 Unmodified _QALALIELY_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000168710|O43865-2|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.300048828125 2 517.30005 1032.58555 0.35188 0.00018203 -0.64634 -0.00033435 -0.29446 -0.00015232 517.2997005226159 91.661 0.55331 91.18 90.817 91.37 -0.48092 80 33 3 0 0 0 0.022193 2 50147 50050;50147 61.357 34.474 1 4430200 48876 6587;7793 33000 33757 56964;56965 56965 0.07055797762859584 QALALIELY 9 Unmodified _QALALIELY_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000168710|O43865-2|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3029174804688 2 517.30005 1032.58555 0.46718 0.00024167 2.0121 0.0010409 2.4793 0.0012826 517.3020931873131 99.666 0.14142 93.49 93.416 93.558 -6.1757 19 8 3 0 0 0 0.024882 1 66440 66440 58.679 16.584 1 42657000 48877 6587;7793 33000 33757 56966 56966 0.07055797762859584 QALANSVPAY 10 Unmodified _QALANSVPAY_ 0 0 0 ENST00000352410.8_1_15:75190163-75190397:+|nuORF ENST00000352410.8_1_15:75190163-75190397:+|nuORF ENST00000352410.8_1_15:75190163-75190397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.270263671875 2 517.269281 1032.52401 0.85536 0.00044245 0.75578 0.00039094 1.6111 0.00083339 517.2699182862978 80.215 0.45301 79.726 79.479 79.932 -0.48932 34 17 3 0 0 0 0.56348 1 43971 43971 13.042 2.2185 1 2460900 48878 12048 33001 33758 56967 56967 0.00904866063569898 QALDTSNVM 9 Oxidation (M) _QALDTSNVM(Oxidation (M))_ QALDTSNVM(1) QALDTSNVM(82) 0 0 1 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.729248046875 2 497.729132 993.44371 -0.20584 -0.00010245 -0.39853 -0.00019836 -0.60437 -0.00030081 497.7292173727118 24.81 0.38707 24.81 24.592 24.979 0 64 30 3 0 0 0 0.0095811 1 12696 12696 81.613 58.877 1 3238800 48879 10217 33002 33759 56968 56968 1661 -0.05327363321782741 QALDTSNVM 9 Unmodified _QALDTSNVM_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 489.7326049804688 2 489.731674 977.448796 NaN NaN NaN NaN NaN NaN NaN 46.822 1 41.742 41.242 42.242 -5.0805 0 0 0 0.022863 1 28989 28989 74.929 34.972 1 48880 10217 33002 33760 56969 56969 -0.04083059459162541 QALEAQYKY 9 Unmodified _QALEAQYKY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2828369140625 2 557.282389 1112.55022 -0.70251 -0.0003915 1.3609 0.0007584 0.65839 0.00036691 557.2830480803025 32.743 0.13294 32.743 32.639 32.772 0 9 6 2 0 0 0 0.06294 1 17126 17126 41.84 22.583 1 1767000 48881 8745 33003 33761 56970 56970 -0.001548647649542545 QALEAQYKY 9 Unmodified _QALEAQYKY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MSMS AL20221201_MKP_PDAC_01 4 557.281982421875 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 37.164 1 32.881 32.381 33.381 -4.2835 0 0 0 0.19623 1 21787 21787 31.268 6.5945 1 48882 8745 33003 33761 56971 56971 -0.001548647649542545 QALEDHFSSF 10 Unmodified _QALEDHFSSF_ 0 0 0 ENST00000466764.5_1_X:48433568-48434262:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF;ENSG00000102317|ENST00000376759|RBM3;ENST00000491240.5_1_X:48433568-48433703:+|nuORF;ENST00000489344.5_1_X:48433568-48434802:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF ENST00000466764.5_1_X:48433568-48434262:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7667846679688 2 590.767103 1179.51965 0.22836 0.00013491 0.73127 0.00043201 0.95963 0.00056692 590.7664490303888 50.106 0.27324 50.106 50.009 50.282 0 29 12 3 0 0 0 0.16524 1 27615 27615 37.974 20.861 1 4711000 48883 2037 33004 33762 56972 56972 -0.06292643150004551 QALEDLAGF 9 Unmodified _QALEDLAGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2427978515625 2 482.242732 962.470912 0.46529 0.00022439 -0.018293 -8.8216E-06 0.447 0.00021556 482.2425335735452 67.094 0.37013 67.094 66.878 67.248 0 40 16 3 0 0 0 0.026094 2 37375 37375;37473 57.471 0 1 6129800 48884 5963 33005 33763 56973;56974 56973 -0.011825117190937817 QALEDLAGF 9 Unmodified _QALEDLAGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2432556152344 2 482.242732 962.470912 0.19997 9.6434E-05 -0.88954 -0.00042898 -0.68957 -0.00033254 482.24222652199876 69.941 0.25537 69.941 69.734 69.989 0 28 17 3 0 0 0 0.10734 1 38905 38905 32.305 0 1 2646100 48885 5963 33005 33763 56975 56975 -0.011825117190937817 QALEDLTGF 9 Unmodified _QALEDLTGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.488037109375 1 993.488753 992.481476 0.10817 0.00010747 -2.5891 -0.0025723 -2.4809 -0.0024648 993.4854783541084 68.546 0.30655 68.546 68.35 68.656 0 23 13 2 0 0 0 0.10734 1 38159 38159 32.305 14.171 1 1038800 48886 5963 33006 33764 56976 56976 -0.015065290646703033 QALEDLTGF 9 Unmodified _QALEDLTGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.248046875 2 497.248015 992.481476 0.3867 0.00019228 -0.22724 -0.00011299 0.15946 7.929E-05 497.24796617302036 68.501 0.38613 68.501 68.33 68.717 0 41 17 3 0 0 0 0.070838 1 38162 38162 39.957 19.504 1 2070400 48887 5963 33006 33764 56977 56977 -0.015065290646703033 QALEELAVNY 10 Unmodified _QALEELAVNY_ 0 0 0 ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B ENSG00000168280|ENST00000435030|KIF5C;ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2930908203125 2 575.292953 1148.57135 0.28272 0.00016265 -0.66786 -0.00038422 -0.38514 -0.00022157 575.2926183206467 61.871 0.38094 61.871 61.663 62.044 0 51 16 4 0 0 0 0.022716 2 34554 34440;34554 96.111 67.029 1 20969000 48888 8019;7740 33007 33765 56978;56979 56979 0.003011005439020664 QALEELAVNY 10 Unmodified _QALEELAVNY_ 0 0 0 ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B ENSG00000168280|ENST00000435030|KIF5C;ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3190307617188 2 575.292953 1148.57135 0.80587 0.00046361 -0.2866 -0.00016488 0.51927 0.00029873 575.794473396285 62.472 0.18911 61.985 61.872 62.061 -0.48764 11 8 2 0 0 0 0.23162 1 34074 34074 12.241 3.6474 1 1224700 48889 8019;7740 33007 33765 56980 56980 0.003011005439020664 QALEELAVNY 10 Unmodified _QALEELAVNY_ 0 0 0 ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF;nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B ENSG00000168280|ENST00000435030|KIF5C;ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2932739257812 2 575.292953 1148.57135 0.78702 0.00045277 -1.1866 -0.00068264 -0.39957 -0.00022987 575.2921539262472 69.557 0.3165 63.381 63.227 63.544 -6.1757 30 16 2 0 0 0 0.018486 1 45437 45437 99.755 70.674 1 29988000 48890 8019;7740 33007 33765 56981 56981 0.003011005439020664 QALEELTGF 9 Unmodified _QALEELTGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2558898925781 2 504.25584 1006.49713 0.45846 0.00023118 0.25991 0.00013106 0.71836 0.00036224 504.25607085073807 69.723 0.51148 69.723 69.423 69.934 0 60 23 4 0 0 0 0.015445 1 38857 38857 68.081 33.978 1 8079800 48891 5963 33008 33766 56982 56982 -0.005862425476038879 QALEELTGF 9 Unmodified _QALEELTGF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2568664550781 2 504.25584 1006.49713 0.78979 0.00039825 1.916 0.00096617 2.7058 0.0013644 504.2563426720806 77.624 0.41386 71.448 71.254 71.668 -6.1757 35 23 2 0 0 0 0.009483 2 50742 50742;50884 81.89 29.622 1 14237000 48892 5963 33008 33766 56983;56984 56983 -0.005862425476038879 QALEEQIAVFA 11 Unmodified _QALEEQIAVFA_ 0 0 0 REV__ENSG00000133030|ENST00000651222|MPRIP REV__ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.821533203125 2 609.821878 1217.6292 -0.67413 -0.0004111 0.26196 0.00015975 -0.41218 -0.00025135 609.8220655600906 30.095 0.29008 30.095 29.953 30.243 0 40 13 4 0 0 0 0.7326 1 15694 15694 1.1933 0 1 17297000 + 48893 19900 33009 33767 56985 56985 0.029093624693359743 QALELDPNLY 10 Unmodified _QALELDPNLY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2994384765625 2 588.300778 1174.587 NaN NaN NaN NaN NaN NaN NaN 70.056 1 70.056 69.556 70.556 0 0 0 0 0.19159 1 39033 39033 43.772 14.691 1 48894 2308 33010 33768 56986 56986 0.006693870609524311 QALETVNDY 9 Unmodified _QALETVNDY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7450561523438 2 526.748379 1051.4822 NaN NaN NaN NaN NaN NaN NaN 38.253 1 38.253 37.753 38.753 0 0 0 0 0.08978 1 20418 20418 46.021 25.567 1 48895 9907 33011 33769 56987 56987 -0.0414773441559646 QALGILCTLF 10 Unmodified _QALGILCTLF_ 0 0 0 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7994995117188 2 539.801903 1077.58925 0.15162 8.1846E-05 -3.8071 -0.0020551 -3.6554 -0.0019732 539.7993929947758 59.115 0.21521 58.624 58.535 58.75 -0.49079 17 9 2 0 0 0 0.38092 1 32169 32169 22.736 2.2827 1 1125900 48896 8540 33012 33770 56988 56988 0.05356144265056173 QALGILCTLF 10 Unmodified _QALGILCTLF_ 0 0 0 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.801903 1077.58925 0.5475 0.00029554 -1.4049 -0.00075836 -0.85738 -0.00046282 539.8018764252035 58.699 0.27568 58.639 58.526 58.801 -0.060719 0.0072285 0.0010335 NaN 22.736 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2344300 48897 8540 33012 33770 0.05356144265056173 QALGPDTPF 9 Unmodified _QALGPDTPF_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2;ENST00000594017.5_1_19:49497156-49513425:+|nuORF nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.237060546875 2 473.23745 944.460347 -0.10429 -4.9352E-05 -0.67148 -0.00031777 -0.77577 -0.00036712 473.23700461935033 56.265 0.29007 56.265 56.093 56.383 0 17 13 2 0 0 0 0.16226 1 31279 31279 26.884 8.7487 1 3181100 48898 9127 33013 33771 56989 56989 -0.014104943735105735 QALGSEPIQY 10 Unmodified _QALGSEPIQY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2801513671875 2 553.279846 1104.54514 0.81228 0.00044942 -0.11428 -6.3229E-05 0.698 0.00038619 553.2798078741232 47.903 0.38585 47.903 47.665 48.051 0 38 18 4 0 0 0 0.0069983 1 26228 26228 93.166 51.21 1 7256900 48899 10015 33014 33772 56990 56990 -0.0029516862757645868 QALKENLYY 9 Unmodified _QALKENLYY_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2986450195312 2 571.298039 1140.58152 -0.0087063 -4.9739E-06 1.2901 0.00073703 1.2814 0.00073206 571.2988504515373 40.66 0.22939 40.66 40.529 40.758 0 28 12 3 0 0 0 0.018301 1 21833 21833 65.235 36.748 1 8237400 48900 1607 33015 33773 56991 56991 0.016857082691331016 QALKENLYY 9 Unmodified _QALKENLYY_ 0 0 0 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 ENSG00000092140|ENST00000206595|G2E3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.298039 1140.58152 0.40848 0.00023337 -1.0921 -0.00062394 -0.68366 -0.00039057 571.2973652877887 41.057 0.080208 40.754 40.718 40.798 -0.30304 0.046778 -0.0021862 NaN 65.235 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1175100 48901 1607 33015 33773 0.016857082691331016 QALKSVVLY 9 Unmodified _QALKSVVLY_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12;ENST00000584289.5_1_17:65341859-65362635:-|nuORF ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8088989257812 2 510.808042 1019.60153 0.85507 0.00043678 -0.27747 -0.00014173 0.57761 0.00029505 510.80818647232496 49.333 0.20021 49.29 49.175 49.376 -0.043694 23 9 3 0 0 0 0.07087 1 26663 26663 39.95 5.8473 1 1993800 48902 9922 33016 33774 56992 56992 0.09251503999757915 QALLDIQEF 9 Unmodified _QALLDIQEF_ 0 0 0 ENSG00000150672|ENST00000376104|DLG2;DLG2|p.V367Cfs*2|1|0.16|ENSG00000150672|chr11:83930411-83930412|-/T|frameshift_variant ENSG00000150672|ENST00000376104|DLG2 ENSG00000150672|ENST00000376104|DLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7848510742188 2 538.784764 1075.55498 0.25067 0.00013506 0.97926 0.00052761 1.2299 0.00066267 538.7852177751319 80.531 0.19818 80.531 80.393 80.592 0 12 8 2 0 0 0 0.43463 1 44710 44710 10.824 0 1 506380 48903 6067 33017 33775 56993 56993 0.020220193778186513 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2904052734375 2 497.290017 992.565481 0.0897 4.4607E-05 0.61059 0.00030364 0.70029 0.00034825 497.29027663437074 70.266 0.36507 70.266 70.109 70.474 0 49 16 4 0 0 0 0.010877 2 39198 39097;39198 77.984 35.89 1 11908000 48904 1451 33018 33776 56994;56995 56995 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2909851074219 2 497.290017 992.565481 0.28875 0.00014359 -0.51397 -0.00025559 -0.22522 -0.000112 497.2898352906684 70.68 0.37192 70.203 70.062 70.434 -0.47736 69 25 4 0 0 0 0.0086179 2 38607 38607;38714 89.427 47.332 1 28919000 48905 1451 33018 33776 56996;56997 56996 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2894592285156 2 497.290017 992.565481 1.0209 0.00050768 0.82127 0.00040841 1.8422 0.00091609 497.29032707335165 78.978 0.64784 72.802 72.5 73.148 -6.1757 61 36 2 0 0 0 0.016184 1 51612 51612 67.344 29.37 1 11498000 48906 1451 33018 33776 56998 56998 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MSMS AL20221201_MKP_PDAC_01 4 497.2896728515625 2 497.290017 992.565481 NaN NaN NaN NaN NaN NaN NaN 78.03 1 71.855 71.355 72.355 -6.1757 0 0 0 0.029091 1 51059 51059 67.344 33.241 1 48907 1451 33018 33776 56999 56999 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MSMS AL20221201_MKP_PDAC_01 4 497.2907409667969 2 497.290017 992.565481 NaN NaN NaN NaN NaN NaN NaN 78.233 1 72.057 71.557 72.557 -6.1757 0 0 0 0.029091 1 51199 51199 67.344 33.241 1 48908 1451 33018 33776 57000 57000 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MSMS AL20221201_MKP_PDAC_01 4 497.2917785644531 2 497.290017 992.565481 NaN NaN NaN NaN NaN NaN NaN 78.415 1 72.24 71.74 72.74 -6.1757 0 0 0 0.014983 1 51326 51326 85.272 39.251 1 48909 1451 33018 33776 57001 57001 0.06890046822900331 QALLDLHAL 9 Unmodified _QALLDLHAL_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MSMS AL20221201_MKP_PDAC_01 4 497.2905578613281 2 497.290017 992.565481 NaN NaN NaN NaN NaN NaN NaN 78.598 1 72.423 71.923 72.923 -6.1757 0 0 0 0.071041 1 51460 51460 50.855 20.63 1 48910 1451 33018 33776 57002 57002 0.06890046822900331 QALLTMDTY 9 Oxidation (M) _QALLTM(Oxidation (M))DTY_ QALLTM(1)DTY QALLTM(64)DTY 0 0 1 nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1;BIN1|p.T468Wfs*18|1|0.08|ENSG00000136717|chr2:127051217-127051218|-/CCCG|frameshift_variant nc|ENSG00000136717|O00499-9|BIN1 nc|ENSG00000136717|O00499-9|BIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2560424804688 2 536.254982 1070.49541 0.56909 0.00030518 0.80775 0.00043316 1.3768 0.00073834 536.2557008158219 47.469 0.51513 47.469 47.192 47.707 0 63 23 4 0 0 0 0.019303 1 25910 25910 64.236 35.749 1 11652000 48911 4848 33019 33777 57003 57003 880 -0.037016196278727875 QALNLPDVF 9 Unmodified _QALNLPDVF_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7747192382812 2 508.7742 1015.53385 0.21003 0.00010686 0.34072 0.00017335 0.55074 0.0002802 508.7744379430468 86.269 0.43214 85.766 85.544 85.976 -0.50318 41 17 3 0 0 0 0.026094 1 47178 47178 57.471 34.323 1 1740700 48912 1772 33020 33778 57004 57004 0.02670054068948957 QALNLPDVF 9 Unmodified _QALNLPDVF_ 0 0 0 nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENSG00000100225|ENST00000266087|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 nc|ENSG00000100225|Q9Y3I1-3|FBXO7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.7742 1015.53385 0.36685 0.00018664 0.45171 0.00022982 0.81856 0.00041646 508.7742349897243 85.756 0.23736 85.756 85.631 85.868 0 -0.0050118 8.7038E-05 NaN 57.471 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 350330 48913 1772 33020 33778 0.02670054068948957 QALNLQVAL 9 Unmodified _QALNLQVAL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2906494140625 2 485.290017 968.565481 0.55894 0.00027125 -0.42709 -0.00020726 0.13185 6.3986E-05 485.28970477274083 82.075 0.50165 75.9 75.73 76.232 -6.1757 33 27 2 0 0 0 0.095405 1 53904 53904 34.102 1.797 1 7583800 48914 7270 33021 33779 57005 57005 0.07994046822898326 QALPNDVLF 9 Unmodified _QALPNDVLF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7749938964844 2 508.7742 1015.53385 0.42426 0.00021585 0.1252 6.3696E-05 0.54946 0.00027955 508.7739277598292 75.464 0.34535 75.464 75.275 75.621 0 23 14 2 0 0 0 0.32871 1 41930 41930 15.847 7.2539 1 767600 48915 9967 33022 33780 57006 57006 0.026700540689603258 QALPNDVLF 9 Unmodified _QALPNDVLF_ 0 0 0 nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 nc|ENSG00000197555|O43166-3|SIPA1L1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.7742 1015.53385 0.2032 0.00010338 0.83237 0.00042349 1.0356 0.00052687 508.774599854999 75.927 0.20335 75.45 75.301 75.505 -0.47714 -0.0068169 0.00037359 NaN 15.847 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 422010 48916 9967 33022 33780 0.026700540689603258 QALQDLLSEY 10 Unmodified _QALQDLLSEY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;ENSG00000183230|ENST00000433211|CTNNA3;nc|ENSG00000183230|Q9UI47-2|CTNNA3;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2987060546875 2 590.298236 1178.58192 0.085382 5.0401E-05 1.0476 0.00061841 1.133 0.00066881 590.29870263295 79.43 0.35904 79.43 79.229 79.588 0 37 14 3 0 0 0 0.04925 2 44167 44065;44167 58.679 35.943 1 5949400 48917 671;924 33023 33781 57007;57008 57008 -0.00022916801663086517 QALQDLLSEY 10 Unmodified _QALQDLLSEY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;ENSG00000183230|ENST00000433211|CTNNA3;nc|ENSG00000183230|Q9UI47-2|CTNNA3;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2979125976562 2 590.298236 1178.58192 0.95157 0.00056171 0.634 0.00037425 1.5856 0.00093596 590.2984775250394 79.985 0.35579 79.496 79.333 79.689 -0.48932 31 13 3 0 0 0 0.13391 1 43779 43779 41.84 23.693 1 4949100 48918 671;924 33023 33781 57009 57009 -0.00022916801663086517 QALQDLLSEY 10 Unmodified _QALQDLLSEY_ 0 0 0 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;ENSG00000183230|ENST00000433211|CTNNA3;nc|ENSG00000183230|Q9UI47-2|CTNNA3;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2 ENSG00000044115|ENST00000302763|CTNNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2981567382812 2 590.298236 1178.58192 1.1899 0.00070237 -1.5968 -0.00094261 -0.40698 -0.00024024 590.2970688650822 88.111 0.61942 81.936 81.57 82.189 -6.1757 73 34 3 0 0 0 0.025861 2 58095 57976;58095 70.332 22.738 1 35684000 48919 671;924 33023 33781 57010;57011 57011 -0.00022916801663086517 QALRDLNTY 9 Unmodified _QALRDLNTY_ 0 0 0 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28;nc|ENSG00000159733|Q9HCC9-7|ZFYVE28;nc|ENSG00000159733|Q9HCC9-6|ZFYVE28;nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2866821289062 2 547.285463 1092.55637 -0.34007 -0.00018612 1.6396 0.00089735 1.2996 0.00071123 547.2867663652347 34.929 0.11639 34.929 34.9 35.016 0 8 5 2 0 0 0 0.0090524 1 18453 18453 85.642 47.668 1 7132800 48920 6671 33024 33782 57012 57012 0.01379653466574382 QALRDLNTY 9 Unmodified _QALRDLNTY_ 0 0 0 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28;nc|ENSG00000159733|Q9HCC9-7|ZFYVE28;nc|ENSG00000159733|Q9HCC9-6|ZFYVE28;nc|ENSG00000159733|Q9HCC9-5|ZFYVE28;nc|ENSG00000159733|Q9HCC9-4|ZFYVE28;nc|ENSG00000159733|Q9HCC9-3|ZFYVE28;nc|ENSG00000159733|Q9HCC9-2|ZFYVE28;ENSG00000159733|ENST00000290974|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 nc|ENSG00000159733|Q9HCC9-8|ZFYVE28 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 547.285463 1092.55637 0.30854 0.00016886 1.0228 0.00055974 1.3313 0.0007286 547.2848038804527 39.727 0.20096 35.277 35.233 35.434 -4.4509 0.17379 -0.0002805 NaN 85.642 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 20304000 48921 6671 33024 33782 0.01379653466574382 QALRENILF 9 Unmodified _QALRENILF_ 0 0 0 nc|ENSG00000156110|P55263-3|ADK;ENSG00000156110|ENST00000539909|ADK nc|ENSG00000156110|P55263-3|ADK nc|ENSG00000156110|P55263-3|ADK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8161010742188 2 552.314023 1102.61349 -0.080805 -4.463E-05 -0.11761 -6.496E-05 -0.19842 -0.00010959 552.3140749893493 60.83 0.20339 60.34 60.21 60.413 -0.48932 18 9 2 0 0 0 0.028475 1 33126 33126 56.177 12.319 1 4695400 48922 6429 33025 33783 57013 57013 0.06629120742945815 QALRLEREEY 10 Unmodified _QALRLEREEY_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2300109863281 3 436.229848 1305.66771 -0.44118 -0.00019246 0.21152 9.227E-05 -0.22966 -0.00010019 436.2299430968314 30.642 0.288 30.642 30.503 30.791 0 36 13 3 0 0 0 0.061704 1 15895 15895 55.467 39.929 1 19472000 48923 8291 33026 33784 57014 57014 0.027106681038503666 QALRLEREEY 10 Unmodified _QALRLEREEY_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2312927246094 3 436.229848 1305.66771 1.0121 0.00044149 1.0114 0.00044122 2.0235 0.00088271 436.2308827665163 34.298 0.39623 30.312 30.133 30.529 -3.9853 49 22 3 0 0 0 0.14294 1 19723 19723 35.996 20.257 1 42064000 48924 8291 33026 33784 57015 57015 0.027106681038503666 QALSEAYSLCC 11 Unmodified _QALSEAYSLCC_ 0 0 0 REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2582397460938 2 594.257199 1186.49985 -0.024144 -1.4348E-05 -0.49579 -0.00029463 -0.51994 -0.00030898 594.2570315227752 51.576 0.22195 51.146 51.048 51.27 -0.42992 25 11 3 0 0 0 0.42108 1 27800 27800 20.415 3.3016 1 5550900 + 48925 28731 33027 33785 57016 57016 -0.08594478476607037 QALSEAYSLCC 11 Unmodified _QALSEAYSLCC_ 0 0 0 REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 594.257199 1186.49985 -0.024144 -1.4348E-05 -0.49579 -0.00029463 -0.51994 -0.00030898 594.2570315227752 51.576 0.22195 51.146 51.048 51.27 -0.42992 0.069971 0.00081614 NaN 20.415 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5550900 + 48926 28731 33027 33785 -0.08594478476607037 QALTELIENY 10 Unmodified _QALTELIENY_ 0 0 0 REV__nc|ENSG00000186628|A1L4K1-2|FSD2 REV__nc|ENSG00000186628|A1L4K1-2|FSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3062744140625 2 597.306061 1192.59757 -0.51891 -0.00030995 0.30646 0.00018305 -0.21245 -0.0001269 597.3063212514655 41.063 0.78241 41.063 40.639 41.422 0 214 58 5 0 0 0 0.38092 2 22231 21895;22231 22.736 0 1 393470000 + 48927 23583 33028 33786 57017;57018 57018 0.008973697154033289 QALVLVLD 8 Unmodified _QALVLVLD_ 0 0 0 REV__ENST00000506098.5_1_4:77065364-77065620:-|nuORF REV__ENST00000506098.5_1_4:77065364-77065620:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7679443359375 2 435.768386 869.522219 0.39694 0.00017297 -1.295 -0.00056433 -0.89809 -0.00039136 435.76771583567944 75.714 0.59941 75.762 75.309 75.909 0.047943 48 27 2 0 0 0 0.80992 1 41751 41751 0.69038 0 1 3209900 + 48928 28081 33029 33787 57019 57019 0.08223857045607019 QAMDSDERI 9 Unmodified _QAMDSDERI_ 0 0 0 REV__ENSG00000132953|ENST00000255305|XPO4 REV__ENSG00000132953|ENST00000255305|XPO4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.7638549804688 2 532.737488 1063.46042 0.4716 0.00025124 1.7567 0.00093585 2.2283 0.0011871 532.7396348347693 45.034 0.068958 40.182 40.133 40.202 -4.852 6 4 2 0 0 0 0.18521 1 27535 27535 3.9444 1.8846 1 3116200 + 48929 19894 33030 33788 57020 57020 -0.06876862435842668 QAMEELKVSF 10 Unmodified _QAMEELKVSF_ 0 0 0 nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1 nc|ENSG00000130779|P30622-2|CLIP1 nc|ENSG00000130779|P30622-2|CLIP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 591.8299560546875 2 591.297181 1180.57981 0.22328 0.00013203 1.0142 0.00059972 1.2375 0.00073174 591.2979877747354 65.4 0.56041 59.224 58.917 59.478 -6.1757 87 31 4 0 0 0 0.18565 1 42319 42319 28.495 11.382 1 53890000 48930 4260 33031 33789 57021 57021 -0.0032566881113780255 QAMLYNFRDRQ 11 Unmodified _QAMLYNFRDRQ_ 0 0 0 nc|ENSG00000291164|Q6ZMU1|C3P1 nc|ENSG00000291164|Q6ZMU1|C3P1 nc|ENSG00000291164|Q6ZMU1|C3P1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.3528442382812 2 721.353885 1440.69322 NaN NaN NaN NaN NaN NaN NaN 50.591 1 50.591 50.091 51.091 0 0 0 0 0.94184 1 27895 27895 1.1933 0 1 48931 16645 33032 33790 57022 57022 -0.009501806453954487 QAMVAHEL 8 Unmodified _QAMVAHEL_ 0 0 0 ENSG00000224051|ENST00000343938|CPTP ENSG00000224051|ENST00000343938|CPTP ENSG00000224051|ENST00000343938|CPTP MSMS AL20221201_MKP_PDAC_01 4 449.7272338867188 2 449.726195 897.437837 NaN NaN NaN NaN NaN NaN NaN 34.99 1 30.895 30.395 31.395 -4.0951 0 0 0 0.60022 1 20246 20246 34.102 10.954 1 48932 10578 33033 33791 57023 57023 -0.014984170427851495 QANCSFQVF 9 Carbamidomethyl (C) _QANC(Carbamidomethyl (C))SFQVF_ QANC(1)SFQVF QANC(44)SFQVF 0 1 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.745361328125 2 550.745116 1099.47568 0.31171 0.00017167 0.68513 0.00037733 0.99683 0.000549 550.7456096478643 61.793 0.2483 61.305 61.139 61.387 -0.48764 25 11 3 0 0 0 0.05447 1 33644 33644 43.858 26.916 1 1621100 48933 2488 33034 33792 57024 57024 247 -0.07007950847992106 QANDDARTF 9 Unmodified _QANDDARTF_ 0 0 0 ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 ENSG00000181029|ENST00000596148|TRAPPC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2359008789062 2 519.23597 1036.45739 1.141 0.00059247 -0.098711 -5.1254E-05 1.0423 0.00054121 519.23592852562 21.824 0.37383 19.089 18.863 19.237 -2.7348 34 20 2 0 0 0 0.091924 1 11688 11688 34.932 20.094 1 2595200 48934 8944 33035 33793 57025 57025 -0.059383694983580426 QANLYYAQY 9 Unmodified _QANLYYAQY_ 0 0 0 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 REV__nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2673950195312 2 567.266739 1132.51892 0.31265 0.00017736 -0.81163 -0.00046041 -0.49898 -0.00028305 567.2668520327858 56.761 0.26988 56.761 56.543 56.813 0 18 11 2 0 0 0 0.1685 1 31580 31580 28.487 3.4959 1 2061800 + 48935 24317 33036 33794 57026 57026 -0.042034377990376015 QANPLLEAF 9 Unmodified _QANPLLEAF_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7666015625 2 501.766374 1001.5182 0.41763 0.00020955 -0.79518 -0.000399 -0.37755 -0.00018944 501.76599302983334 79.05 0.73209 79.05 78.64 79.372 0 109 33 5 0 0 0 0.0082281 3 43883 43782;43883;43984 92.822 0 1 48788000 48936 352 33037 33795 57027;57028;57029 57028 0.017497675518939104 QANPLLEAF 9 Unmodified _QANPLLEAF_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7666931152344 2 501.766374 1001.5182 0.6085 0.00030533 -0.7587 -0.00038069 -0.1502 -7.5363E-05 501.76599160522125 79.531 0.67358 79.042 78.638 79.312 -0.48932 79 29 3 0 0 0 0.0090851 3 43539 43436;43539;43638 85.357 0 1 38326000 48937 352 33037 33795 57030;57031;57032 57031 0.017497675518939104 QANPLLEAF 9 Unmodified _QANPLLEAF_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7663269042969 2 501.766374 1001.5182 0.37252 0.00018692 -1.0136 -0.00050858 -0.64105 -0.00032166 501.7661292205254 78.962 0.3763 79.016 78.809 79.185 0.054977 32 14 3 0 0 0 0.0095811 1 43590 43590 81.613 0 1 2161400 48938 352 33037 33795 57033 57033 0.017497675518939104 QANPLLEAF 9 Unmodified _QANPLLEAF_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7666625976562 2 501.766374 1001.5182 1.2555 0.00062994 -0.14457 -7.2541E-05 1.1109 0.0005574 501.7663302973549 86.191 0.91017 80.015 79.581 80.492 -6.1757 137 49 4 0 0 0 0.0082281 3 56995 56744;56871;56995 92.822 0 1 160400000 48939 352 33037 33795 57034;57035;57036 57036 0.017497675518939104 QANPLLEAF 9 Unmodified _QANPLLEAF_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7675170898438 2 501.766374 1001.5182 1.3303 0.00066752 -3.6555 -0.0018342 -2.3251 -0.0011667 501.76485776143227 86.713 0.054169 80.537 80.492 80.546 -6.1757 4 2 2 0 0 0 0.07916 1 57141 57141 37.974 0 1 4392600 48940 352 33037 33795 57037 57037 0.017497675518939104 QANRDTLAF 9 Unmodified _QANRDTLAF_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.26513671875 2 518.26453 1034.51451 0.26291 0.00013626 0.58799 0.00030474 0.85091 0.00044099 518.2649120013235 40.034 0.38318 40.034 39.853 40.236 0 40 17 3 0 0 0 0.010611 1 21443 21443 78.728 13.493 1 5332100 48941 6809 33038 33796 57038 57038 -0.0013690222197055846 QANRRLLLRI 10 Unmodified _QANRRLLLRI_ 0 0 0 ENST00000462828.1_1_7:115580420-115582090:-|nuORF;nc|ENSG00000105967|O14948-3|TFEC;nc|ENSG00000105967|O14948-4|TFEC;nc|ENSG00000105967|O14948-2|TFEC;ENSG00000105967|ENST00000265440|TFEC ENST00000462828.1_1_7:115580420-115582090:-|nuORF ENST00000462828.1_1_7:115580420-115582090:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.9033203125 2 626.901663 1251.78877 1.3771 0.00086328 1.1737 0.00073581 2.5508 0.0015991 626.9025083899796 104.62 0.078438 98.449 98.398 98.476 -6.1757 6 3 2 0 0 0 0.71123 1 70061 70061 1.6526 0.17072 1 9105200 48942 2382 33039 33797 57039 57039 0.17294960327831177 QANVICIVY 9 Carbamidomethyl (C) _QANVIC(Carbamidomethyl (C))IVY_ QANVIC(1)IVY QANVIC(48)IVY 0 1 0 nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.28125 2 540.281334 1078.54812 -0.2446 -0.00013215 0.19218 0.00010383 -0.052424 -2.8324E-05 540.2814881608061 69.843 0.24504 69.364 69.203 69.448 -0.47903 26 10 3 0 0 0 0.042911 1 38183 38183 48.346 14.243 1 1856800 48943 3977 33040 33798 57040 57040 402 0.01198383225573707 QANVICIVY 9 Carbamidomethyl (C) _QANVIC(Carbamidomethyl (C))IVY_ QANVIC(1)IVY QANVIC(57)IVY 0 1 0 nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1;nc|ENSG00000126858|Q8IXI2-6|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 nc|ENSG00000126858|Q8IXI2-4|RHOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.279541015625 2 540.281334 1078.54812 0.42821 0.00023135 -1.4954 -0.00080794 -1.0672 -0.00057659 540.2803329396706 76.472 0.46568 70.296 70.023 70.489 -6.1757 36 25 2 0 0 0 0.026094 1 49972 49972 57.471 15.377 1 16111000 48944 3977 33040 33798 57041 57041 402 0.01198383225573707 QANWGSFHPPR 11 Unmodified _QANWGSFHPPR_ 0 0 0 ENST00000549788.1_1_12:52668819-52672895:-|nuORF ENST00000549788.1_1_12:52668819-52672895:-|nuORF ENST00000549788.1_1_12:52668819-52672895:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.321533203125 2 648.815253 1295.61595 0.49186 0.00031913 -1.0147 -0.00065835 -0.52284 -0.00033923 648.8142758923959 52.273 0.21617 51.84 51.709 51.925 -0.43367 18 10 2 0 0 0 0.26469 1 28251 28251 20.415 7.3721 1 1819400 48945 15153 33041 33799 57042 57042 -0.02003030799392036 QAPEHTKEL 9 Unmodified _QAPEHTKEL_ 0 0 0 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7718505859375 2 526.772188 1051.52982 NaN NaN NaN NaN NaN NaN NaN 17.681 1 17.681 17.181 18.181 0 0 0 0 0.84737 1 8731 8731 1.8442 0 1 + 48946 21673 33042 33800 57043 57043 0.006119645752505676 QAPLATKA 8 Unmodified _QAPLATKA_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 400.2384948730469 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 106.48 1 100.3 99.8 100.8 -6.1757 0 0 0 0.97444 1 71270 71270 2.3027 0 1 + 48947 18970 33043 33801 57044 57044 0.052661306972822786 QAPLATKA 8 Unmodified _QAPLATKA_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 400.2383728027344 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 106.82 1 100.65 100.15 101.15 -6.1757 0 0 0 0.97444 1 71488 71488 2.3027 0 1 + 48948 18970 33043 33801 57045 57045 0.052661306972822786 QAPREMSS 8 Unmodified _QAPREMSS_ 0 0 0 ENST00000540753.5_1_9:125133477-125134045:+|nuORF ENST00000540753.5_1_9:125133477-125134045:+|nuORF ENST00000540753.5_1_9:125133477-125134045:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2102661132812 2 453.210909 904.407265 NaN NaN NaN NaN NaN NaN NaN 89.776 1 89.776 89.276 90.276 0 0 0 0 0.97444 1 49671 49671 0.69038 0 1 48949 15036 33044 33802 57046 57046 -0.04876195427834773 QAPTTESF 8 Unmodified _QAPTTESF_ 0 0 0 REV__ENST00000418994.1_1_3:15248030-15252351:+|nuORF REV__ENST00000418994.1_1_3:15248030-15252351:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 440.7076110839844 2 440.705983 879.397412 NaN NaN NaN NaN NaN NaN NaN 19.719 1 17.063 16.563 17.563 -2.6564 0 0 0 0.93587 1 10468 10468 13.508 0 1 + 48950 26812 33045 33803 57047 57047 -0.047110601615713676 QAPVPTPP 8 Unmodified _QAPVPTPP_ 0 0 0 ENST00000262577.5_1_8:144519846-144520068:-|nuORF ENST00000262577.5_1_8:144519846-144520068:-|nuORF ENST00000262577.5_1_8:144519846-144520068:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.4430541992188 1 806.44068 805.433404 0.065688 5.2974E-05 1.7287 0.0013941 1.7944 0.0014471 806.4421060860556 72.499 0.35711 72.499 72.28 72.637 0 22 13 2 0 0 0 0.75262 1 40314 40314 12.532 0.89125 1 1030900 48951 11269 33046 33804 57048 57048 0.022904418059511045 QAQGEAPGLM 10 Unmodified _QAQGEAPGLM_ 0 0 0 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2330017089844 2 501.239667 1000.46478 0.77885 0.00039039 -1.2536 -0.00062836 -0.47476 -0.00023797 501.2391140798165 35.424 0.79435 31.232 30.819 31.613 -4.1928 135 48 4 0 0 0 0.50362 1 20765 20765 16.149 1.3108 1 122320000 48952 6422 33047 33805 57049 57049 -0.035433532222555186 QAQGVLVL 8 Unmodified _QAQGVLVL_ 0 0 0 ENST00000320580.8_1_11:66010778-66011036:+|nuORF ENST00000320580.8_1_11:66010778-66011036:+|nuORF ENST00000320580.8_1_11:66010778-66011036:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.5011596679688 1 827.498529 826.491253 0.13353 0.0001105 -0.14649 -0.00012122 -0.012954 -1.072E-05 827.4980391154722 52.846 0.21795 52.846 52.702 52.92 0 15 9 2 0 0 0 0.80992 1 29230 29230 0.69038 0 1 1185200 48953 11763 33048 33806 57050 57050 0.07106703731358266 QARAAVDTY 9 Unmodified _QARAAVDTY_ 0 0 0 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7516479492188 2 497.751256 993.487959 NaN NaN NaN NaN NaN NaN NaN 20.28 1 20.28 19.78 20.78 0 0 0 0 0.6557 1 10196 10196 10.824 1.4408 1 48954 9765 33049 33807 57051 57051 -0.009045911133057416 QARAEEDAQRF 11 Unmodified _QARAEEDAQRF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8803100585938 3 440.881219 1319.62183 -0.29521 -0.00013015 -0.072463 -3.1947E-05 -0.36767 -0.0001621 440.881336102928 18.904 0.15838 18.904 18.806 18.965 0 32 13 3 0 0 0 0.61596 1 9405 9405 10.527 6.1213 1 2147000 48955 16412 33050 33808 57052 57052 -0.02519977078395641 QARAEEDAQRF 11 Unmodified _QARAEEDAQRF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 440.8809204101562 3 440.881219 1319.62183 NaN NaN NaN NaN NaN NaN NaN 20.219 1 17.526 17.026 18.026 -2.693 0 0 0 0.2397 1 10762 10762 36.955 21.998 1 48956 16412 33050 33808 57053 57053 -0.02519977078395641 QARDADIEF 9 Unmodified _QARDADIEF_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7554321289062 2 532.753995 1063.49344 0.53327 0.0002841 2.0706 0.0011031 2.6039 0.0013872 532.7549374975035 39.125 0.35281 39.125 38.929 39.282 0 27 16 2 0 0 0 0.010611 1 20914 20914 78.728 4.3053 1 23619000 48957 10598 33051 33809 57054 57054 -0.03576912321477721 QARDLFMHFLI 11 Unmodified _QARDLFMHFLI_ 0 0 0 REV__ENSG00000198471|ENST00000358241|RTP2 REV__ENSG00000198471|ENST00000358241|RTP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 695.8685913085938 2 695.86864 1389.72273 0.35017 0.00024367 -0.34261 -0.00023841 0.0075594 5.2604E-06 695.8686565755901 102.03 0.24278 95.856 95.735 95.978 -6.1757 22 11 3 0 0 0 0.24216 1 68489 68489 29.841 3.5724 1 8125700 + 48958 22838 33052 33810 57055 57055 0.04345383370764466 QARIEIESF 9 Unmodified _QARIEIESF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7874755859375 2 546.787838 1091.56112 0.77303 0.00042268 -1.3268 -0.00072549 -0.55378 -0.0003028 546.7871540279336 51.113 0.46887 51.113 50.833 51.302 0 90 23 5 0 0 0 0.015688 1 28227 28227 85.272 39.251 1 323980000 48959 673 33053 33811 57056 57056 0.019005376093446102 QARIEIESF 9 Unmodified _QARIEIESF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7876586914062 2 546.787838 1091.56112 -0.21084 -0.00011528 0.44732 0.00024459 0.23649 0.00012931 546.7879646000597 51.61 0.24348 51.176 51.061 51.305 -0.43367 21 12 2 0 0 0 0.037253 1 27830 27830 65.235 19.214 1 10030000 48960 673 33053 33811 57057 57057 0.019005376093446102 QARIEIESF 9 Unmodified _QARIEIESF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.787841796875 2 546.787838 1091.56112 0.67073 0.00036675 -0.64256 -0.00035135 0.028164 1.54E-05 546.7874993048648 56.991 0.62784 51.014 50.736 51.363 -5.9769 106 36 4 0 0 0 0.0093064 2 36538 36395;36538 103.75 45.069 1 469520000 48961 673 33053 33811 57058;57059 57059 0.019005376093446102 QARIEIESF 9 Unmodified _QARIEIESF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.787838 1091.56112 -0.070409 -3.8499E-05 -3.1864 -0.0017423 -3.2568 -0.0017808 546.7876119108985 51.215 0.27972 51.161 51.007 51.286 -0.053871 0.045133 -0.0025963 NaN 103.75 34 13 5 NaN NaN NaN NaN 0 NaN NaN 0 3504500 48962 673 33053 33811 0.019005376093446102 QARLEKEYF 9 Unmodified _QARLEKEYF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2079162597656 3 395.208384 1182.60332 -0.37349 -0.00014761 0.87948 0.00034758 0.50599 0.00019997 395.2086717041647 31.778 0.28093 31.778 31.619 31.9 0 51 13 5 0 0 0 0.2324 2 16523 16523;16621 20.415 2.0414 1 25699000 48963 5337 33054 33812 57060;57061 57060 0.019325130177094252 QARLEKEYF 9 Unmodified _QARLEKEYF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2088928222656 3 395.208384 1182.60332 1.0538 0.00041649 -0.4711 -0.00018618 0.58275 0.00023031 395.2081906053755 35.098 0.45261 31.003 30.788 31.24 -4.0951 65 26 3 0 0 0 0.2324 2 20238 20238;20360 20.415 3.8487 1 41116000 48964 5337 33054 33812 57062;57063 57062 0.019325130177094252 QARLEKEYF 9 Unmodified _QARLEKEYF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 592.30908203125 2 592.308938 1182.60332 NaN NaN NaN NaN NaN NaN NaN 35.084 1 30.989 30.489 31.489 -4.0951 0 0 0 0.01832 1 20302 20302 78.728 29.174 1 48965 5337 33054 33812 57064 57064 0.019325130177094252 QARLEKEYF 9 Unmodified _QARLEKEYF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.208384 1182.60332 0.1468 5.8016E-05 1.2845 0.00050763 1.4313 0.00056565 395.20869957268025 31.662 0.14625 31.532 31.454 31.601 -0.12915 -0.12264 0.00037389 NaN 20.415 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 522120 48966 5337 33054 33812 0.019325130177094252 QARLILSLPE 10 Unmodified _QARLILSLPE_ 0 0 0 REV__ENST00000463753.5_1_3:99357381-99394559:+|nuORF REV__ENST00000463753.5_1_3:99357381-99394559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 570.2997436523438 2 570.342781 1138.67101 NaN NaN NaN NaN NaN NaN NaN 80.1 1 73.924 73.424 74.424 -6.1757 0 0 0 0.78298 1 52537 52537 13.042 1.4022 1 + 48967 27215 33055 33813 57065 57065 0.10721962948514374 QARQLMCPF 9 Unmodified _QARQLMCPF_ 0 0 0 ENST00000582035.1_1_17:43530658-43531768:-|nuORF ENST00000582035.1_1_17:43530658-43531768:-|nuORF ENST00000582035.1_1_17:43530658-43531768:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8827514648438 3 365.180895 1092.52086 -0.46968 -0.00017152 -2.1499 -0.0007851 -2.6196 -0.00095662 365.1803084094397 19.534 0.16439 19.534 19.452 19.616 0 34 24 2 0 0 0 0.58466 1 9737 9737 1.1933 0.12188 1 601520 48968 15566 33056 33814 57066 57066 -0.02170423586449033 QARRQRKHSM 10 Unmodified _QARRQRKHSM_ 0 0 0 nc|ENSG00000163362|Q3KP66|INAVA;ENSG00000163362|ENST00000413687|INAVA nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.355224609375 2 649.354554 1296.69455 -0.029081 -1.8884E-05 -2.9782 -0.0019339 -3.0073 -0.0019528 649.35286089851 87.337 0.38432 87.337 87.147 87.531 0 33 18 2 0 0 0 0.56348 1 48421 48421 13.042 5.9407 1 441320 48969 16325 33057 33815 57067 57067 0.0580749823404858 QASDVSVKY 9 Unmodified _QASDVSVKY_ 0 0 0 ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7535400390625 2 498.753464 995.492375 -0.29402 -0.00014664 0.28986 0.00014457 -0.0041541 -2.0719E-06 498.75350217374006 26.478 0.46535 26.478 26.17 26.636 0 72 23 4 0 0 0 0.040683 2 13660 13561;13660 49.554 22.671 1 50357000 48970 683 33058 33816 57068;57069 57069 -0.0055512669038080276 QASDVSVKY 9 Unmodified _QASDVSVKY_ 0 0 0 ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7532958984375 2 498.753464 995.492375 0.30146 0.00015035 0.57687 0.00028772 0.87833 0.00043807 498.7536198306377 26.358 0.16891 26.385 26.256 26.425 0.026951 9 7 2 0 0 0 0.1685 1 13670 13670 26.268 13.737 1 2353300 48971 683 33058 33816 57070 57070 -0.0055512669038080276 QASDVSVKY 9 Unmodified _QASDVSVKY_ 0 0 0 ENSG00000047410|ENST00000367478|TPR;nc|ENSG00000047410|P12270-2|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7521057128906 2 498.753464 995.492375 0.65221 0.00032529 -0.14132 -7.0486E-05 0.51089 0.00025481 498.75340573840674 30.009 0.43456 26.512 26.264 26.698 -3.497 51 20 3 0 0 0 0.0093064 2 16813 16813;16931 83.429 44.814 1 191080000 48972 683 33058 33816 57071;57072 57071 -0.0055512669038080276 QASEHFFEY 9 Unmodified _QASEHFFEY_ 0 0 0 ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;nc|ENSG00000177830|Q9BWS9-3|CHID1 ENSG00000177830|ENST00000323578|CHID1 ENSG00000177830|ENST00000323578|CHID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2489624023438 2 579.248546 1156.48254 1.263 0.00073162 -0.46628 -0.00027009 0.79676 0.00046152 579.2483783766427 54.119 0.47996 48.254 48.02 48.5 -5.8653 72 27 3 0 0 0 0.015445 2 34370 34229;34370 68.081 52.234 1 41805000 48973 8709 33059 33817 57073;57074 57074 -0.08944314695759203 QASEHFFEY 9 Unmodified _QASEHFFEY_ 0 0 0 ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;nc|ENSG00000177830|Q9BWS9-3|CHID1 ENSG00000177830|ENST00000323578|CHID1 ENSG00000177830|ENST00000323578|CHID1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 579.248546 1156.48254 -0.38326 -0.00022201 0.76537 0.00044334 0.38211 0.00022134 579.7509368676431 48.718 0.11069 48.718 48.675 48.786 0 0.1984 0.0012338 NaN 68.081 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 5794300 48974 8709 33059 33817 -0.08944314695759203 QASEISKAL 9 Unmodified _QASEISKAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7636413574219 2 473.763832 945.513111 -0.2306 -0.00010925 1.008 0.00047758 0.77745 0.00036833 473.7636372644502 30.819 0.47119 30.819 30.503 30.974 0 55 22 3 0 0 0 0.044011 1 16034 16034 47.749 13.347 1 10043000 48975 16188 33060 33818 57075 57075 0.03817463689279066 QASEISKAL 9 Unmodified _QASEISKAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7638549804688 2 473.763832 945.513111 0.85744 0.00040622 -0.42155 -0.00019972 0.43589 0.00020651 473.7634075974169 34.703 0.4328 30.607 30.384 30.817 -4.0951 66 25 3 0 0 0 0.0087807 2 20077 19952;20077 106.94 10.829 1 40355000 48976 16188 33060 33818 57076;57077 57077 0.03817463689279066 QASELVVTY 9 Unmodified _QASELVVTY_ 0 0 0 ENSG00000168646|ENST00000307078|AXIN2 ENSG00000168646|ENST00000307078|AXIN2 ENSG00000168646|ENST00000307078|AXIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2628173828125 2 505.263665 1008.51278 0.17037 8.6081E-05 -0.25103 -0.00012684 -0.080658 -4.0754E-05 505.26364721452825 52.199 0.44738 52.199 51.996 52.443 0 51 19 3 0 0 0 0.011968 2 28809 28809;28917 74.929 15.337 1 14748000 48977 7786 33061 33819 57078;57079 57078 0.008860439694217348 QASFPRSL 8 Unmodified _QASFPRSL_ 0 0 0 REV__ENSG00000204262|ENST00000374866|COL5A2 REV__ENSG00000204262|ENST00000374866|COL5A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2447509765625 2 453.245609 904.476666 NaN NaN NaN NaN NaN NaN NaN 78.981 1 78.981 78.481 79.481 0 0 0 0 0.97444 1 43878 43878 2.5775 0 1 + 48978 24152 33062 33820 57080 57080 0.020606315832424116 QASGILPEY 9 Unmodified _QASGILPEY_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4931640625 1 977.493838 976.486562 -0.45036 -0.00044022 -0.67802 -0.00066276 -1.1284 -0.001103 977.4933505832745 55.315 0.24397 55.315 55.17 55.414 0 12 10 2 0 0 0 0.06294 1 30717 30717 41.84 9.0539 1 1084400 48979 760 33063 33821 57081 57081 -0.002622252020501037 QASGILPEY 9 Unmodified _QASGILPEY_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2511596679688 2 489.250557 976.486562 -0.37018 -0.00018111 0.56759 0.00027769 0.19741 9.6581E-05 489.25088393750536 55.287 0.45349 55.287 55.077 55.531 0 30 19 2 0 0 0 0.047196 1 30769 30769 46.021 11.919 1 2824300 48980 760 33063 33821 57082 57082 -0.002622252020501037 QASGITGSY 9 Unmodified _QASGITGSY_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 883.4168701171875 1 883.415588 882.408311 -0.33109 -0.00029249 0.60659 0.00053587 0.2755 0.00024338 883.4161727351482 29.467 0.26664 29.467 29.242 29.508 0 27 12 3 0 0 0 0.0059585 1 15204 15204 114.65 53.292 1 2799500 48981 1710 33064 33822 57083 57083 -0.03759657787281867 QASNILASF 9 Unmodified _QASNILASF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7508850097656 2 475.750724 949.486896 NaN NaN NaN NaN NaN NaN NaN 71.015 1 71.015 70.515 71.515 0 0 0 0 0.26667 1 39563 39563 26.884 6.43 1 48982 496 33065 33823 57084 57084 0.010131945178045498 QASNILASF 9 Unmodified _QASNILASF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.750732421875 2 475.750724 949.486896 0.62042 0.00029516 -1.4316 -0.0006811 -0.81122 -0.00038594 475.750880698796 71.522 0.59462 71.045 70.767 71.362 -0.47735 51 24 3 0 0 0 0.042911 1 39059 39059 48.346 4.4876 1 4710400 48983 496 33065 33823 57085 57085 0.010131945178045498 QASNILASF 9 Unmodified _QASNILASF_ 0 0 0 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 ENSG00000015479|ENST00000394805|MATR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7515869140625 2 475.750724 949.486896 0.68083 0.00032391 0.33553 0.00015963 1.0164 0.00048354 475.75094773624954 77.512 0.58477 71.336 71.1 71.684 -6.1757 44 33 2 0 0 0 0.018301 1 50648 50648 65.235 9.058 1 10995000 48984 496 33065 33823 57086 57086 0.010131945178045498 QASPSIEAF 9 Unmodified _QASPSIEAF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.4584350585938 1 949.462538 948.455261 -0.43018 -0.00040844 1.5063 0.0014302 1.0761 0.0010217 949.4617770393661 52.534 0.28344 52.534 52.353 52.636 0 20 12 2 0 0 0 0.078314 2 29120 29017;29120 38.176 9.6887 1 2695800 48985 1413 33066 33824 57087;57088 57088 -0.021027982361374598 QASPSIEAF 9 Unmodified _QASPSIEAF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2345886230469 2 475.234907 948.455261 0.18661 8.8682E-05 -0.41073 -0.00019519 -0.22412 -0.00010651 475.23464264317715 52.499 0.36655 52.499 52.311 52.678 0 22 16 2 0 0 0 0.010818 1 29095 29095 78.149 38.192 1 10044000 48986 1413 33066 33824 57089 57089 -0.021027982361374598 QASPSIEAF 9 Unmodified _QASPSIEAF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MSMS AL20221201_MKP_PDAC_01 4 475.23486328125 2 475.234907 948.455261 NaN NaN NaN NaN NaN NaN NaN 60.059 1 53.945 53.445 54.445 -6.1147 0 0 0 0.0066921 1 38623 38623 99.799 47.531 1 48987 1413 33066 33824 57090 57090 -0.021027982361374598 QASRAIDPTL 10 Unmodified _QASRAIDPTL_ 0 0 0 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 ENSG00000278803|ENST00000458091|PWWP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2918090820312 2 536.293288 1070.57202 0.48984 0.0002627 -0.72352 -0.00038802 -0.23367 -0.00012532 536.2926815709907 66.397 0.65331 60.221 60.045 60.698 -6.1757 80 36 3 0 0 0 0.20962 1 43292 43292 32.786 2.1491 1 75613000 48988 10938 33067 33825 57091 57091 0.039559399836207376 QASSAAFRY 9 Unmodified _QASSAAFRY_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7461242675781 2 500.745973 999.477394 0.27478 0.0001376 -0.14695 -7.3584E-05 0.12783 6.4011E-05 500.7458448616613 31.185 0.28333 31.185 31.013 31.296 0 16 13 2 0 0 0 0.1685 1 16213 16213 26.268 5.8145 1 4139200 48989 768 33068 33826 57092 57092 -0.02236573767720529 QASSAAFRY 9 Unmodified _QASSAAFRY_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7464294433594 2 500.745973 999.477394 0.90532 0.00045334 -0.22121 -0.00011077 0.68412 0.00034257 500.74561980971004 34.485 0.40454 30.39 30.16 30.565 -4.0951 30 23 2 0 0 0 0.015445 1 19873 19873 68.081 41.197 1 11127000 48990 768 33068 33826 57093 57093 -0.02236573767720529 QASTVVTYVY 10 Unmodified _QASTVVTYVY_ 0 0 0 ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29 ENSG00000111237|ENST00000549578|VPS29 ENSG00000111237|ENST00000549578|VPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7907104492188 2 565.790047 1129.56554 0.59292 0.00033547 -0.77763 -0.00043998 -0.18471 -0.00010451 565.7898916668986 53.63 0.31067 53.63 53.486 53.797 0 21 14 2 0 0 0 0.1942 1 29740 29740 34.402 18.555 1 3286900 48991 2770 33069 33827 57094 57094 0.005940020322441342 QASWSDWEGL 10 Unmodified _QASWSDWEGL_ 0 0 0 REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF REV__ENST00000399510.6_3_17:7122235-7122592:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5091247558594 3 393.508611 1177.504 0.47319 0.0001862 -0.045808 -1.8026E-05 0.42738 0.00016818 393.50871727612076 24.661 0.36255 21.778 21.541 21.904 -2.8831 51 19 4 0 0 0 0.69064 1 13474 13474 1.9064 0 1 9310700 + 48992 26584 33070 33828 57095 57095 -0.07764929667041542 QATAQDPVF 9 Unmodified _QATAQDPVF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7403869628906 2 488.740357 975.46616 0.048332 2.3622E-05 -0.57597 -0.0002815 -0.52764 -0.00025788 488.7402120097504 43.419 0.20628 43.419 43.3 43.507 0 21 9 3 0 0 0 0.013041 1 23573 23573 71.922 35.878 1 4369000 48993 9805 33071 33829 57096 57096 -0.022553958618573233 QATDADEPF 9 Unmodified _QATDADEPF_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.4183959960938 1 993.415982 992.408705 -0.034299 -3.4073E-05 0.83993 0.0008344 0.80563 0.00080033 993.4166215679646 37.282 0.31093 37.282 37.117 37.428 0 25 15 2 0 0 0 0.0026776 2 19776 19776;19891 128.37 82.344 1 3048000 48994 1262 33072 33830 57097;57098 57097 -0.08780282858094779 QATDSILVF 9 Unmodified _QATDSILVF_ 0 0 0 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2666015625 2 497.266207 992.517862 0.25936 0.00012897 0.70322 0.00034969 0.96257 0.00047866 497.26660681248865 79.683 0.46878 79.683 79.418 79.887 0 48 19 3 0 0 0 0.013041 2 44288 44186;44288 71.922 39.617 1 3507700 48995 3423 33073 33831 57099;57100 57100 0.02130347832053303 QATDSILVF 9 Unmodified _QATDSILVF_ 0 0 0 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.5291137695312 1 993.525138 992.517862 -0.021413 -2.1275E-05 0.8946 0.00088881 0.87319 0.00086753 993.5258132611359 79.626 0.27431 79.626 79.523 79.797 0 21 11 2 0 0 0 0.19127 2 44200 44200;44300 24.021 9.1823 1 1166600 48996 3423 33073 33831 57101;57102 57101 0.02130347832053303 QATDSILVF 9 Unmodified _QATDSILVF_ 0 0 0 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2669067382812 2 497.266207 992.517862 0.91783 0.0004564 1.3892 0.00069079 2.307 0.0011472 497.26712694826193 80.158 0.40491 79.668 79.428 79.833 -0.48933 37 15 3 0 0 0 0.32871 2 43845 43845;43946 15.847 3.7301 1 1743300 48997 3423 33073 33831 57103;57104 57103 0.02130347832053303 QATDSILVF 9 Unmodified _QATDSILVF_ 0 0 0 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15;nc|ENSG00000119321|Q5T1M5-3|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2666625976562 2 497.266207 992.517862 1.1469 0.0005703 -0.65485 -0.00032563 0.49202 0.00024467 497.26602840763303 87.151 0.30455 80.975 80.77 81.075 -6.1757 26 16 2 0 0 0 0.047788 1 57405 57405 45.7 13.394 1 11861000 48998 3423 33073 33831 57105 57105 0.02130347832053303 QATFMQGRL 9 Unmodified _QATFMQGRL_ 0 0 0 REV__ENST00000588224.1_1_10:118427801-118429708:-|nuORF REV__ENST00000588224.1_1_10:118427801-118429708:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7721557617188 2 526.271301 1050.52805 0.79556 0.00041868 2.134 0.0011231 2.9296 0.0015418 526.2726804570319 73.825 0.2597 73.825 73.663 73.922 0 20 10 2 0 0 0 0.58865 1 41052 41052 2.0598 0 1 957440 + 48999 29122 33074 33832 57106 57106 0.004806322856438783 QATKLILNY 9 Unmodified _QATKLILNY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29552193-29556516:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.31201171875 2 532.310949 1062.60735 0.80776 0.00042998 -0.53883 -0.00028683 0.26893 0.00014315 532.3109911225285 50.549 0.42318 50.135 49.971 50.394 -0.41351 48 20 4 0 0 0 0.0071894 1 27191 27191 111.29 71.33 1 14579000 49000 16480 33075 33833 57107 57107 0.0785460251142922 QATKLILNY 9 Unmodified _QATKLILNY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29552193-29556516:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.312255859375 2 532.310949 1062.60735 1.4507 0.00077222 -0.23612 -0.00012569 1.2146 0.00064653 532.3109632635036 50.209 0.26397 50.16 50.027 50.291 -0.048824 30 12 3 0 0 0 0.10734 1 27185 27185 32.305 10.559 1 4047300 49001 16480 33075 33833 57108 57108 0.0785460251142922 QATKLILNY 9 Unmodified _QATKLILNY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;ENST00000493220.5_2_17:29552193-29556516:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8121337890625 2 532.310949 1062.60735 0.51516 0.00027422 -0.46262 -0.00024626 0.052543 2.7969E-05 532.3103914914822 55.862 0.52536 49.94 49.669 50.195 -5.9211 69 30 3 0 0 0 0.0082353 2 35534 35534;35666 96.111 37.432 1 64197000 49002 16480 33075 33833 57109;57110 57109 0.0785460251142922 QATLSPWEL 9 Unmodified _QATLSPWEL_ 0 0 0 REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.77294921875 2 522.771657 1043.52876 0.52732 0.00027567 -1.2572 -0.00065721 -0.72986 -0.00038155 523.2716048080187 39.378 0.26678 39.378 39.202 39.469 0 22 12 2 0 0 0 0.39863 1 21061 21061 12.532 1.7076 1 3507700 + 49003 21655 33076 33834 57111 57111 0.008737502063240754 QATRAALVF 9 Unmodified _QATRAALVF_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7821960449219 2 488.782359 975.550165 0.49484 0.00024187 0.69557 0.00033998 1.1904 0.00058185 488.78265256355655 48.863 0.23171 48.819 48.714 48.946 -0.04369 19 11 2 0 0 0 0.094149 1 26428 26428 34.402 5.9149 1 2666600 49004 2721 33077 33835 57112 57112 0.06141180025713311 QATRTVPVF 9 Unmodified _QATRTVPVF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.78759765625 2 509.787641 1017.56073 -0.43907 -0.00022383 0.36655 0.00018686 -0.072523 -3.6972E-05 509.7880114316948 44.421 0.23902 44.105 44.026 44.265 -0.31585 34 16 3 0 0 0 0.0032147 1 23685 23685 125.53 64.172 1 34017000 49005 9188 33078 33836 57113 57113 0.05265162680143476 QATRTVPVF 9 Unmodified _QATRTVPVF_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7877502441406 2 509.787641 1017.56073 0.62738 0.00031983 0.45437 0.00023163 1.0817 0.00055146 509.7878298155124 48.756 0.48717 43.36 43.101 43.588 -5.3961 69 28 3 0 0 0 0.0086209 3 30534 30277;30404;30534 89.401 53.336 1 164710000 49006 9188 33078 33836 57114;57115;57116 57116 0.05265162680143476 QATTAYFLY 9 Unmodified _QATTAYFLY_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.26708984375 2 539.266207 1076.51786 -0.19448 -0.00010488 1.5475 0.0008345 1.353 0.00072962 539.2670138617774 69.496 0.524 69.017 68.721 69.245 -0.47903 33 22 2 0 0 0 0.07916 1 38027 38027 37.974 19.839 1 3815900 49007 517 33079 33837 57117 57117 -0.017336521679453654 QATTAYFLY 9 Unmodified _QATTAYFLY_ 0 0 0 nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000517791.1_1_5:149786694-149792396:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000522153.1_1_5:149786338-149792312:-|nuORF nc|ENSG00000019582|P04233-5|CD74 nc|ENSG00000019582|P04233-5|CD74 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 539.266207 1076.51786 0.70141 0.00037825 0.93958 0.00050668 1.641 0.00088493 539.266678748765 75.38 0.80041 69.204 68.72 69.521 -6.1757 0.12853 -5.6369E-05 NaN 37.974 63 43 2 NaN NaN NaN NaN 0 NaN NaN 0 14602000 49008 517 33079 33837 -0.017336521679453654 QATTLNVAF 9 Unmodified _QATTLNVAF_ 0 0 0 ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENST00000507425.5_1_4:16181029-16193070:-|nuORF ENSG00000169762|ENST00000405303|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7579345703125 2 482.758549 963.502546 0.70881 0.00034218 -1.067 -0.00051509 -0.35818 -0.00017291 482.7582489596131 62.657 0.18166 62.17 62.061 62.243 -0.48764 12 8 2 0 0 0 0.1773 1 34134 34134 25.399 11.493 1 1958600 49009 7914 33080 33838 57118 57118 0.019334810348595965 QATTLNVAF 9 Unmodified _QATTLNVAF_ 0 0 0 ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENST00000507425.5_1_4:16181029-16193070:-|nuORF ENSG00000169762|ENST00000405303|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 482.758549 963.502546 0.17972 8.6763E-05 -1.1623 -0.00056111 -0.98257 -0.00047435 482.75795414225786 61.823 0.31114 61.823 61.663 61.974 0 -0.17342 -6.361E-05 NaN 25.399 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1617100 49010 7914 33080 33838 0.019334810348595965 QAVAAVQKM 9 Oxidation (M) _QAVAAVQKM(Oxidation (M))_ QAVAAVQKM(1) QAVAAVQKM(52) 0 0 1 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2616271972656 2 481.260402 960.506251 0.48611 0.00023395 0.95857 0.00046132 1.4447 0.00069527 481.2608773954257 17.321 0.093805 14.734 14.651 14.745 -2.5866 16 13 2 0 0 0 0.03568 1 9031 9031 52.268 30.522 1 1978000 49011 2601 33081 33839 57119 57119 448 0.024418275370635456 QAVADAVTY 9 Unmodified _QAVADAVTY_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.4624633789062 1 937.462538 936.455261 0.098525 9.2363E-05 -0.42843 -0.00040164 -0.32991 -0.00030928 937.4620203981167 37.489 0.34611 37.489 37.316 37.662 0 53 18 4 0 0 0 0.0021556 2 19997 19879;19997 131.27 69.91 1 47809000 49012 5417 33082 33840 57120;57121 57121 -0.01550798236155515 QAVADAVTY 9 Unmodified _QAVADAVTY_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7366027832031 2 469.234907 936.455261 0.37303 0.00017504 -0.5396 -0.0002532 -0.16656 -7.8157E-05 469.2346786395805 37.496 0.47295 37.496 37.333 37.806 0 56 24 3 0 0 0 0.0090948 2 19888 19888;20012 85.272 51.17 1 47726000 49013 5417 33082 33840 57122;57123 57122 -0.01550798236155515 QAVADAVTY 9 Unmodified _QAVADAVTY_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 937.4633178710938 1 937.462538 936.455261 0.37064 0.00034746 -0.0090605 -8.4939E-06 0.36158 0.00033897 937.4625667693356 44.247 0.51502 39.395 39.147 39.662 -4.852 101 36 4 0 0 0 0.0004779 3 26955 26827;26955;27085 144.35 78.862 1 103250000 49014 5417 33082 33840 57124;57125;57126 57125 -0.01550798236155515 QAVADAVTY 9 Unmodified _QAVADAVTY_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2350769042969 2 469.234907 936.455261 0.47665 0.00022366 -0.82623 -0.0003877 -0.34958 -0.00016404 469.2348564518553 44.244 0.52924 39.392 39.133 39.662 -4.852 124 37 4 0 0 0 0.0082485 3 26968 26834;26968;27098 96.285 58.134 1 185540000 49015 5417 33082 33840 57127;57128;57129 57128 -0.01550798236155515 QAVADMAAY 9 Oxidation (M) _QAVADM(Oxidation (M))AAY_ QAVADM(1)AAY QAVADM(100)AAY 0 0 1 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2131958007812 2 478.213117 954.411682 -0.42342 -0.00020248 0.10749 5.1405E-05 -0.31593 -0.00015108 478.2133438713792 27.049 0.42917 27.049 26.803 27.232 0 62 20 4 0 0 0 0.00856 2 13844 13844;13947 100.37 49.516 1 23243000 49016 10669 33083 33841 57130;57131 57130 1709 -0.06734731004939931 QAVADMAAY 9 Oxidation (M) _QAVADM(Oxidation (M))AAY_ QAVADM(1)AAY QAVADM(75)AAY 0 0 1 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.4205322265625 1 955.418959 954.411682 -0.82304 -0.00078635 0.17399 0.00016624 -0.64904 -0.00062011 955.419550225429 27.039 0.32889 27.039 26.846 27.174 0 35 15 3 0 0 0 0.011968 2 13855 13855;13959 74.929 38.802 1 4837800 49017 10669 33083 33841 57132;57133 57132 1709 -0.06734731004939931 QAVADMAAY 9 Oxidation (M) _QAVADM(Oxidation (M))AAY_ QAVADM(1)AAY QAVADM(110)AAY 0 0 1 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2129821777344 2 478.213117 954.411682 0.61783 0.00029545 -0.47672 -0.00022798 0.1411 6.7477E-05 478.21283175200097 31.698 0.38378 28.002 27.823 28.206 -3.6958 33 20 2 0 0 0 0.0071894 1 17941 17941 111.29 43.206 1 41500000 49018 10669 33083 33841 57134 57134 1709 -0.06734731004939931 QAVADMAAY 9 Unmodified _QAVADMAAY_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 939.4263916015625 1 939.424044 938.416767 -0.5339 -0.00050156 -0.090163 -8.4701E-05 -0.62406 -0.00058626 939.4240600587145 41.353 0.14334 41.353 41.261 41.404 0 10 6 2 0 0 0 0.0082485 1 22269 22269 96.285 47.939 1 3059500 49019 10669 33083 33842 57135 57135 -0.054904271423311 QAVADMAAY 9 Unmodified _QAVADMAAY_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.4243774414062 1 939.424044 938.416767 0.61637 0.00057903 0.098494 9.2528E-05 0.71486 0.00067156 939.4241369060982 48.336 0.4974 43.102 42.851 43.348 -5.2339 79 29 3 0 0 0 0.0036082 3 29963 29963;30094;30223 123.45 51.528 1 77628000 49020 10669 33083 33842 57136;57137;57138 57136 -0.054904271423311 QAVADMAAY 9 Unmodified _QAVADMAAY_ 0 0 0 ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825046-32825190:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF ENST00000467593.1_1_6:32823908-32826344:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2170104980469 2 470.21566 938.416767 0.84521 0.00039743 0.48933 0.00023009 1.3345 0.00062752 470.2156915315797 48.362 0.58685 43.128 42.834 43.421 -5.2339 81 34 3 0 0 0 0.010611 2 29986 29986;30121 78.728 22.551 1 78655000 49021 10669 33083 33842 57139;57140 57139 -0.054904271423311 QAVAIFTVY 9 Unmodified _QAVAIFTVY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1;ENST00000285383.6_1_7:6895426-6899450:-|nuORF ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2793884277344 2 506.279118 1010.54368 0.43423 0.00021984 -0.52231 -0.00026443 -0.088082 -4.4594E-05 506.2786130873661 79.719 0.3901 79.719 79.546 79.936 0 27 16 2 0 0 0 0.41742 2 44236 44236;44341 11.64 5.0209 1 1033900 49022 2696 33084 33843 57141;57142 57141 0.038832420743119656 QAVAIFTVY 9 Unmodified _QAVAIFTVY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1;ENST00000285383.6_1_7:6895426-6899450:-|nuORF ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2803649902344 2 506.279118 1010.54368 0.54909 0.00027799 0.87031 0.00044062 1.4194 0.00071861 506.2794525695642 80.191 0.87181 79.702 79.403 80.275 -0.48932 93 34 4 0 0 0 0.038285 2 44028 43924;44028 50.855 21.462 1 25329000 49023 2696 33084 33843 57143;57144 57144 0.038832420743119656 QAVAIFTVY 9 Unmodified _QAVAIFTVY_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1;ENST00000285383.6_1_7:6895426-6899450:-|nuORF ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2789916992188 2 506.279118 1010.54368 0.94974 0.00048083 -1.0594 -0.00053634 -0.10964 -5.5506E-05 506.2783064436299 87.346 0.68867 81.17 80.788 81.476 -6.1757 79 34 3 0 0 0 0.031062 2 57613 57485;57613 54.774 22.657 1 102710000 49024 2696 33084 33843 57145;57146 57146 0.038832420743119656 QAVDAVEEF 9 Unmodified _QAVDAVEEF_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2380676269531 2 504.237647 1006.46074 0.48751 0.00024582 -0.32919 -0.00016599 0.15833 7.9834E-05 504.2376678737759 50.392 0.3717 50.392 50.188 50.56 0 39 16 3 0 0 0 0.011968 2 27712 27712;27824 74.929 36.955 1 28239000 49025 5260 33085 33844 57147;57148 57147 -0.042231194443274944 QAVDAVEEF 9 Unmodified _QAVDAVEEF_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1;ENST00000587875.1_1_16:4882642-4897278:-|nuORF nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2380065917969 2 504.237647 1006.46074 1.3486 0.00068 0.25672 0.00012945 1.6053 0.00080944 504.23740658854086 58.472 0.41522 52.398 52.165 52.58 -6.0745 69 22 4 0 0 0 0.0088174 2 37505 37375;37505 103.75 42.391 1 52357000 49026 5260 33085 33844 57149;57150 57150 -0.042231194443274944 QAVENLCSY 9 Carbamidomethyl (C) _QAVENLC(Carbamidomethyl (C))SY_ QAVENLC(1)SY QAVENLC(96)SY 0 1 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2430419921875 2 542.242406 1082.47026 0.57916 0.00031404 0.13189 7.1517E-05 0.71105 0.00038556 542.2424254501998 45.908 0.41683 40.953 40.745 41.162 -4.9549 67 27 3 0 0 0 0.0082485 2 28199 28199;28339 96.285 56.327 1 30265000 49027 6576 33086 33845 57151;57152 57151 647 -0.06767674430466286 QAVEVLPHF 9 Unmodified _QAVEVLPHF_ 0 0 0 ENST00000528150.1_1_1:78206598-78225465:-|nuORF ENST00000528150.1_1_1:78206598-78225465:-|nuORF ENST00000528150.1_1_1:78206598-78225465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2823486328125 2 520.282192 1038.54983 0.35892 0.00018674 0.14169 7.3719E-05 0.50061 0.00026046 520.2823219610802 61.615 0.36633 61.615 61.455 61.821 0 32 16 3 0 0 0 0.03327 1 34343 34343 53.576 39.67 1 2566400 49028 14850 33087 33846 57153 57153 0.03209760305844611 QAVEVLPHF 9 Unmodified _QAVEVLPHF_ 0 0 0 ENST00000528150.1_1_1:78206598-78225465:-|nuORF ENST00000528150.1_1_1:78206598-78225465:-|nuORF ENST00000528150.1_1_1:78206598-78225465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2830810546875 2 520.282192 1038.54983 0.55608 0.00028932 -1.0182 -0.00052973 -0.46209 -0.00024042 520.2829173292796 62.115 0.25782 61.628 61.51 61.768 -0.48764 27 11 3 0 0 0 0.12841 1 33842 33842 30.225 18.585 1 2705200 49029 14850 33087 33846 57154 57154 0.03209760305844611 QAVFFLEV 8 Unmodified _QAVFFLEV_ 0 0 0 REV__ENST00000254998.2_1_20:23335152-23335317:+|nuORF REV__ENST00000254998.2_1_20:23335152-23335317:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.762451171875 2 476.760561 951.506569 0.63498 0.00030273 1.0207 0.00048662 1.6557 0.00078935 476.7616463639593 63.93 0.46347 63.444 63.275 63.739 -0.48512 69 24 4 0 0 0 0.58902 1 34931 34931 26.884 2.2098 1 17068000 + 49030 24910 33088 33847 57155 57155 0.028875705285713593 QAVFPSGLE 9 Unmodified _QAVFPSGLE_ 0 0 0 REV__ENST00000600463.1_1_19:18284987-18285218:+|nuORF REV__ENST00000600463.1_1_19:18284987-18285218:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.4832153320312 1 947.483273 946.475997 -0.34714 -0.00032891 0.80986 0.00076733 0.46273 0.00043843 947.4841538289965 61.459 0.27655 61.459 61.321 61.597 0 21 12 2 0 0 0 0.16226 1 34234 34234 26.884 0 1 1286900 + 49031 29248 33089 33848 57156 57156 0.0006179214352641793 QAVGGGLLY 9 Unmodified _QAVGGGLLY_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.4771118164062 1 877.477794 876.470518 -0.47573 -0.00041744 -0.49715 -0.00043624 -0.97287 -0.00085367 877.4772108482226 55.931 0.35984 55.931 55.756 56.115 0 42 20 3 0 0 0 0.0086629 2 31145 31029;31145 101.72 34.687 1 11196000 49032 718 33090 33849 57157;57158 57158 0.02734113351709766 QAVGGGLLY 9 Unmodified _QAVGGGLLY_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2420959472656 2 439.242535 876.470518 NaN NaN NaN NaN NaN NaN NaN 55.936 1 55.936 55.436 56.436 0 0 0 0 0.46757 1 31092 31092 16.942 2.3606 1 49033 718 33090 33849 57159 57159 0.02734113351709766 QAVGGGLLY 9 Unmodified _QAVGGGLLY_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4783935546875 1 877.477794 876.470518 1.1518 0.0010107 0.16802 0.00014743 1.3198 0.0011581 877.4776807133858 63.738 0.42762 57.562 57.375 57.802 -6.1757 55 23 3 0 0 0 0.016184 2 41174 41174;41307 67.344 20.423 1 30560000 49034 718 33090 33849 57160;57161 57160 0.02734113351709766 QAVGGQDVAF 10 Unmodified _QAVGGQDVAF_ 0 0 0 ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2467346191406 2 496.245806 990.47706 0.16412 8.1444E-05 1.12 0.00055579 1.2841 0.00063724 496.2461248613918 45.581 0.28491 45.581 45.46 45.745 0 33 14 3 0 0 0 0.013171 2 24822 24822;24932 81.89 49.105 1 26343000 49035 8449 33091 33850 57162;57163 57162 -0.018559934875725048 QAVGGQDVAF 10 Unmodified _QAVGGQDVAF_ 0 0 0 ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B MSMS AL20221201_MKP_PDAC_01 4 496.2455749511719 2 496.245806 990.47706 NaN NaN NaN NaN NaN NaN NaN 52.712 1 46.978 46.478 47.478 -5.7345 0 0 0 0.025224 1 33280 33280 85.642 49.135 1 49036 8449 33091 33850 57164 57164 -0.018559934875725048 QAVGIILHY 9 Unmodified _QAVGIILHY_ 0 0 0 ENSG00000152990|ENST00000334304|ADGRA3;nc|ENSG00000152990|Q8IWK6-3|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 ENSG00000152990|ENST00000334304|ADGRA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.294189453125 2 507.292559 1012.57057 -0.046632 -2.3656E-05 1.9125 0.00097019 1.8659 0.00094653 507.2937194825176 59.09 0.21108 58.599 58.474 58.685 -0.49079 17 9 2 0 0 0 0.16776 1 32134 32134 26.341 11.76 1 1469800 49037 6226 33092 33851 57165 57165 0.06478350685506484 QAVHLESDAF 10 Unmodified _QAVHLESDAF_ 0 0 0 nc|ENSG00000185515|P46736-5|BRCC3;ENSG00000185515|ENST00000330045|BRCC3;nc|ENSG00000185515|P46736-3|BRCC3;nc|ENSG00000185515|P46736|BRCC3 nc|ENSG00000185515|P46736-5|BRCC3 nc|ENSG00000185515|P46736-5|BRCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.771484375 2 558.769645 1115.52474 1.0061 0.00056218 -0.2439 -0.00013629 0.76219 0.00042589 558.7697125730639 42.885 0.26896 42.885 42.737 43.006 0 38 13 4 0 0 0 3.6552E-05 1 23222 23222 122.18 40.289 1 14642000 49038 9380 33093 33852 57166 57166 -0.02840339287399729 QAVILDQKY 9 Unmodified _QAVILDQKY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3009033203125 2 539.300581 1076.58661 0.17717 9.5547E-05 0.025471 1.3736E-05 0.20264 0.00010928 539.3004361616603 40.057 0.36252 40.057 39.873 40.236 0 60 17 5 0 0 0 0.010301 1 21477 21477 79.596 45.494 1 161720000 49039 4028 33094 33853 57167 57167 0.05138012131760661 QAVILDQKY 9 Unmodified _QAVILDQKY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3007202148438 2 539.300581 1076.58661 0.35282 0.00019028 0.92691 0.00049988 1.2797 0.00069016 539.3008884792191 40.379 0.23443 40.082 39.942 40.177 -0.29716 25 10 3 0 0 0 0.044296 1 21314 21314 47.594 20.711 1 4669100 49040 4028 33094 33853 57168 57168 0.05138012131760661 QAVILDQKY 9 Unmodified _QAVILDQKY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.301513671875 2 539.300581 1076.58661 NaN NaN NaN NaN NaN NaN NaN 40.046 1 40.051 39.551 40.551 0.0050545 0 0 0 0.15231 1 21346 21346 36.506 20.659 1 49041 4028 33094 33853 57169 57169 0.05138012131760661 QAVILDQKY 9 Unmodified _QAVILDQKY_ 0 0 0 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 ENSG00000127831|ENST00000248444|VIL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.30078125 2 539.300581 1076.58661 0.24975 0.00013469 0.15213 8.2044E-05 0.40188 0.00021674 539.300551404927 45.347 0.58411 40.392 40.072 40.656 -4.9549 106 39 4 0 0 0 0.0074135 3 27802 27661;27802;27947 110.67 68.58 1 265280000 49042 4028 33094 33853 57170;57171;57172 57171 0.05138012131760661 QAVMHSCSY 9 Carbamidomethyl (C) _QAVMHSC(Carbamidomethyl (C))SY_ QAVMHSC(1)SY QAVMHSC(92)SY 0 1 0 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.72314453125 2 541.723326 1081.4321 0.068254 3.6975E-05 0.014887 8.0647E-06 0.083141 4.5039E-05 541.7236553216741 23.803 0.29778 20.976 20.809 21.107 -2.8273 34 18 3 0 0 0 0.0082661 2 12962 12848;12962 92.491 59.706 1 7276800 49043 6120 33095 33854 57173;57174 57174 609 -0.10535883616762476 QAVNVVINF 9 Unmodified _QAVNVVINF_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2823486328125 2 502.282192 1002.54983 0.89084 0.00044746 0.67358 0.00033833 1.5644 0.00078578 502.2821995620137 81.83 0.40152 75.655 75.481 75.883 -6.1757 30 22 2 0 0 0 0.031062 1 53721 53721 54.774 8.7526 1 10759000 49044 2715 33096 33855 57175 57175 0.048657603058586574 QAVPIEGAY 9 Unmodified _QAVPIEGAY_ 0 0 0 REV__ENSG00000153933|ENST00000284061|DGKE REV__ENSG00000153933|ENST00000284061|DGKE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.4817504882812 1 947.483273 946.475997 -0.34714 -0.00032891 0.80986 0.00076733 0.46273 0.00043843 947.4841538289965 61.459 0.27655 61.459 61.321 61.597 0 21 12 2 0 0 0 0.14602 1 34337 34337 28.487 1.6032 1 1286900 + 49045 21198 33097 33856 57176 57176 0.0006179214351504925 QAVPLADSF 9 Unmodified _QAVPLADSF_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2459106445312 2 474.245275 946.475997 0.27772 0.00013171 -0.016241 -7.7021E-06 0.26148 0.000124 474.2452580537782 61.482 0.32279 61.482 61.297 61.62 0 36 14 3 0 0 0 0.070838 2 34241 34241;34342 39.957 18.211 1 4221100 49046 1880 33098 33857 57177;57178 57177 0.0006179214351504925 QAVQDLESL 9 Unmodified _QAVQDLESL_ 0 0 0 ENST00000476275.5_1_1:78046613-78098535:-|nuORF;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3;nc|ENSG00000036549|Q8IYH5-3|ZZZ3 ENST00000476275.5_1_1:78046613-78098535:-|nuORF ENST00000476275.5_1_1:78046613-78098535:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7592468261719 2 501.758746 1001.50294 0.10269 5.1525E-05 1.1997 0.00060196 1.3024 0.00065349 501.7588642837974 52.088 0.27122 52.088 52.016 52.287 0 21 11 2 0 0 0 0.047196 1 28838 28838 46.021 11.619 1 2340100 49047 623 33099 33858 57179 57179 0.002248559640406711 QAVQQQEVY 9 Unmodified _QAVQQQEVY_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;ENST00000475367.1_1_9:131356439-131361310:+|nuORF nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.769775390625 2 546.769645 1091.52474 -0.52274 -0.00028582 0.10684 5.8414E-05 -0.4159 -0.0002274 546.7696158493707 27.828 0.32715 27.828 27.638 27.965 0 44 15 4 0 0 0 0.025842 2 14301 14301;14398 57.722 24.936 1 18768000 49048 9990 33100 33859 57180;57181 57180 -0.017363392873676275 QAVQQQEVY 9 Unmodified _QAVQQQEVY_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;ENST00000475367.1_1_9:131356439-131361310:+|nuORF nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7698364257812 2 546.769645 1091.52474 0.99804 0.0005457 -0.33367 -0.00018244 0.66437 0.00036326 546.7694706983511 32.339 0.36947 28.482 28.301 28.67 -3.8562 52 21 3 0 0 0 0.017075 2 18347 18347;18475 66.457 33.671 1 51408000 49049 9990 33100 33859 57182;57183 57182 -0.017363392873676275 QAVRCVTSY 9 Carbamidomethyl (C) _QAVRC(Carbamidomethyl (C))VTSY_ QAVRC(1)VTSY QAVRC(89)VTSY 0 1 0 nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1 nc|ENSG00000070047|Q9P1Y6-2|PHRF1 nc|ENSG00000070047|Q9P1Y6-2|PHRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2673950195312 2 542.266216 1082.51788 0.63609 0.00034493 -0.33763 -0.00018309 0.29846 0.00016185 542.2658744326167 28.64 0.21535 25.491 25.358 25.573 -3.1482 18 10 2 0 0 0 0.0086209 1 15988 15988 89.401 38.546 1 6208300 49050 1016 33101 33860 57184 57184 89 -0.02007975439596521 QAVSERLFY 9 Unmodified _QAVSERLFY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.790771484375 2 556.790381 1111.56621 1.0131 0.0005641 0.012985 7.2298E-06 1.0261 0.00057133 556.7904497296789 49.85 0.34928 49.458 49.277 49.627 -0.3923 32 17 2 0 0 0 0.078314 1 26813 26813 38.176 17.761 1 34525000 49051 16348 33102 33861 57185 57185 0.014888414719507637 QAVSERLFY 9 Unmodified _QAVSERLFY_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7911376953125 2 556.790381 1111.56621 1.0882 0.0006059 0.37518 0.0002089 1.4634 0.0008148 556.7902854124067 54.89 0.47708 49.025 48.819 49.296 -5.8653 77 29 3 0 0 0 0.008513 1 34765 34765 99.755 59.806 1 144110000 49052 16348 33102 33861 57186 57186 0.014888414719507637 QAVSLYQE 8 Unmodified _QAVSLYQE_ 0 0 0 REV__ENSG00000100154|ENST00000397906|TTC28 REV__ENSG00000100154|ENST00000397906|TTC28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.4691772460938 1 937.462538 936.455261 0.098525 9.2363E-05 -0.42843 -0.00040164 -0.32991 -0.00030928 937.4620203981167 37.489 0.34611 37.489 37.316 37.662 0 53 18 4 0 0 0 0.80232 1 19986 19986 5.2307 0 1 47809000 + 49053 18021 33103 33862 57187 57187 -0.015507982361441464 QAVTIVAQY 9 Unmodified _QAVTIVAQY_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7747497558594 2 496.7742 991.533846 0.62487 0.00031042 -0.013891 -6.9005E-06 0.61097 0.00030352 496.77432506613354 50.961 0.23662 50.961 50.813 51.05 0 25 13 3 0 0 0 0.0082661 1 28069 28069 92.491 58.389 1 5087400 49054 1168 33104 33863 57188 57188 0.037740540689469526 QAVTIVAQY 9 Unmodified _QAVTIVAQY_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7760009765625 2 496.7742 991.533846 1.492 0.0007412 0.20305 0.00010087 1.6951 0.00084207 496.77455463416504 58.606 0.38297 52.532 52.336 52.719 -6.0745 45 21 3 0 0 0 0.009483 1 37621 37621 81.89 39.796 1 22463000 49055 1168 33104 33863 57189 57189 0.037740540689469526 QAVTPITSF 9 Unmodified _QAVTPITSF_ 0 0 0 nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2;ENST00000547809.5_1_12:105570964-105626916:-|nuORF nc|ENSG00000136044|Q8NEU8-2|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2621765136719 2 482.260925 962.507297 0.54594 0.00026329 -0.28768 -0.00013874 0.25826 0.00012455 482.2609383885182 60.833 0.28301 60.833 60.67 60.953 0 20 11 2 0 0 0 0.12424 1 33917 33917 30.637 17.129 1 1205400 49056 4779 33105 33864 57190 57190 0.024543651776298248 QAVTPITSF 9 Unmodified _QAVTPITSF_ 0 0 0 nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2;ENST00000547809.5_1_12:105570964-105626916:-|nuORF nc|ENSG00000136044|Q8NEU8-2|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2602844238281 2 482.260925 962.507297 -0.080259 -3.8706E-05 0.71117 0.00034297 0.63092 0.00030427 482.26120693062455 61.388 0.2536 60.899 60.756 61.009 -0.48932 27 11 3 0 0 0 0.039985 1 33396 33396 49.933 28.186 1 2805600 49057 4779 33105 33864 57191 57191 0.024543651776298248 QAWEEGGILYL 11 Unmodified _QAWEEGGILYL_ 0 0 0 nc|ENSG00000127564|Q99640-4|PKMYT1;nc|ENSG00000127564|Q99640-2|PKMYT1;nc|ENSG00000127564|Q99640-3|PKMYT1;ENSG00000127564|ENST00000262300|PKMYT1 nc|ENSG00000127564|Q99640-4|PKMYT1 nc|ENSG00000127564|Q99640-4|PKMYT1 MSMS AL20221201_MKP_PDAC_01 4 639.82080078125 2 639.821878 1277.6292 NaN NaN NaN NaN NaN NaN NaN 98.933 1 92.757 92.257 93.257 -6.1757 0 0 0 0.18502 1 65739 65739 40.239 11.752 1 49058 4017 33106 33865 57192 57192 0.0014936246936940734 QAWHGLQTF 9 Unmodified _QAWHGLQTF_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2702026367188 2 544.269616 1086.52468 0.24647 0.00013415 -0.19966 -0.00010867 0.046814 2.548E-05 544.2696104424803 53.704 0.2537 53.253 53.148 53.402 -0.45173 32 12 3 0 0 0 0.008678 1 29039 29039 88.904 48.946 1 11729000 49059 457 33107 33866 57193 57193 -0.01512294496751565 QAWHGLQTF 9 Unmodified _QAWHGLQTF_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2694091796875 2 544.269616 1086.52468 -0.10068 -5.4799E-05 0.27242 0.00014827 0.17174 9.3473E-05 544.2696068106433 53.401 0.38077 53.338 53.136 53.517 -0.063423 44 18 3 0 0 0 0.011968 2 28901 28901;29005 74.929 38.857 1 17272000 49060 457 33107 33866 57194;57195 57194 -0.01512294496751565 QAWHGLQTF 9 Unmodified _QAWHGLQTF_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2702026367188 2 544.269616 1086.52468 1.349 0.00073422 1.0797 0.00058763 2.4287 0.0013219 544.2701270625384 58.917 0.60527 52.843 52.565 53.171 -6.0745 82 33 4 0 0 0 0.031062 1 37696 37696 54.774 24.549 1 107120000 49061 457 33107 33866 57196 57196 -0.01512294496751565 QAWNDHQTAM 10 Oxidation (M) _QAWNDHQTAM(Oxidation (M))_ QAWNDHQTAM(1) QAWNDHQTAM(51) 0 0 1 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.2546997070312 2 609.253837 1216.49312 1.0056 0.00061266 0.22972 0.00013996 1.2353 0.00075262 609.2540504792892 20.896 0.25531 18.203 18.065 18.321 -2.693 18 14 2 0 0 0 0.078742 1 11144 11144 51.415 35.568 1 1166900 49062 621 33108 33867 57197 57197 95 -0.10646655312984876 QAWREEVAA 9 Unmodified _QAWREEVAA_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2620239257812 2 530.26453 1058.51451 NaN NaN NaN NaN NaN NaN NaN 30.909 1 30.909 30.409 31.409 0 0 0 0 0.083082 1 16079 16079 47.749 14.963 1 49063 8934 33109 33868 57198 57198 -0.012409022219571852 QAYAVPYQY 9 Unmodified _QAYAVPYQY_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7637329101562 2 551.763832 1101.51311 0.40382 0.00022281 0.004118 2.2722E-06 0.40794 0.00022508 551.7640794208166 50.444 0.18735 50.444 50.308 50.495 0 16 8 3 0 0 0 0.41742 1 27828 27828 11.64 1.5664 1 2388200 49064 16138;16139 33110 33869 57199 57199 -0.03358536310724958 QAYDDKIYY 9 Unmodified _QAYDDKIYY_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7711791992188 2 589.771854 1177.52915 0.34277 0.00020216 -0.29929 -0.00017651 0.043484 2.5645E-05 589.7716051005739 39.02 0.36512 39.02 38.811 39.177 0 52 16 4 0 0 0 0.14 2 20947 20838;20947 29.082 9.8246 1 38996000 49065 5073 33111 33870 57200;57201 57201 -0.05250874864486832 QAYEDVLERY 10 Unmodified _QAYEDVLERY_ 0 0 0 nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;ENST00000467673.5_1_1:39571193-39720158:+|nuORF;ENST00000521821.1_1_6:56535374-56707943:-|nuORF nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.3084106445312 2 643.306592 1284.59863 0.09728 6.2581E-05 1.2319 0.00079249 1.3292 0.00085507 643.3073344056907 50.14 0.20592 50.14 50.053 50.259 0 21 9 3 0 0 0 0.036372 1 27625 27625 64.927 38.659 1 3788700 49066 16276 33112 33871 57202 57202 -0.03228415915691585 QAYGNSEGP 9 Unmodified _QAYGNSEGP_ 0 0 0 ENST00000557815.1_1_15:70347348-70347768:-|nuORF ENST00000557815.1_1_15:70347348-70347768:-|nuORF ENST00000557815.1_1_15:70347348-70347768:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 461.6990661621094 2 461.698689 921.382825 NaN NaN NaN NaN NaN NaN NaN 22.076 1 19.341 18.841 19.841 -2.7348 0 0 0 0.82739 1 11861 11861 4.3292 0 1 49067 15267 33113 33872 57203 57203 -0.08101132309707282 QAYLNLEWET 10 Unmodified _QAYLNLEWET_ 0 0 0 ENST00000470904.5_1_3:122176581-122178306:-|nuORF ENST00000470904.5_1_3:122176581-122178306:-|nuORF ENST00000470904.5_1_3:122176581-122178306:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8034057617188 2 633.803685 1265.59282 0.10032 6.358E-05 -0.6304 -0.00039955 -0.53008 -0.00033597 633.8034440504402 90.682 0.21757 90.188 89.991 90.208 -0.49457 13 9 2 0 0 0 0.66229 1 49532 49532 7.1017 1.3699 1 478900 49068 13864 33114 33873 57204 57204 -0.029355144273722544 QAYPEYLITF 10 Unmodified _QAYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.81396484375 2 622.813522 1243.61249 0.2911 0.0001813 0.11487 7.1541E-05 0.40597 0.00025284 622.8135700695636 90.075 0.30232 90.075 89.93 90.233 0 55 22 3 0 0 0 0.6785 1 49789 49789 5.2969 3.2371 1 1014900 49069 8296;8297 33115 33874 57205 57205 0.00042861583347075793 QAYPEYLITF 10 Unmodified _QAYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8129272460938 2 622.813522 1243.61249 0.39372 0.00024521 -1.0207 -0.00063568 -0.62694 -0.00039047 622.8128182775508 90.64 0.3815 90.145 89.912 90.294 -0.49458 56 18 4 0 0 0 0.067957 2 49573 49470;49573 53.833 41.592 1 12205000 49070 8296;8297 33115 33874 57206;57207 57207 0.00042861583347075793 QAYPEYLITF 10 Unmodified _QAYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8153076171875 2 622.813522 1243.61249 0.77236 0.00048104 -0.2223 -0.00013845 0.55007 0.00034259 622.8132318203798 99.339 0.30367 93.163 92.957 93.261 -6.1757 45 18 4 0 0 0 0.011118 1 66059 66059 85.642 66.385 1 204530000 49071 8296;8297 33115 33874 57208 57208 0.00042861583347075793 QAYPEYLITF 10 Unmodified _QAYPEYLITF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14;ENSG00000173200|ENST00000464300|PARP15 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 622.813522 1243.61249 0.66672 0.00041524 -0.51267 -0.0003193 0.15405 9.5944E-05 622.8131437124108 90.05 0.16523 90.093 89.966 90.131 0.042175 -0.011779 -3.2212E-05 NaN 53.833 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4665500 49072 8296;8297 33115 33874 0.00042861583347075793 QAYPEYLITY 10 Unmodified _QAYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.8087768554688 2 630.810979 1259.6074 0.41748 0.00026335 0.22594 0.00014253 0.64342 0.00040587 630.8109880558501 72.953 0.3392 72.953 72.762 73.101 0 37 15 3 0 0 0 0.32072 2 40568 40568;40665 26.268 13.226 1 2242300 49073 8309;2522 33116 33875 57209;57210 57209 -0.012014422792390178 QAYPEYLITY 10 Unmodified _QAYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8112182617188 2 630.810979 1259.6074 0.42061 0.00026532 0.64233 0.00040519 1.0629 0.00067051 630.8112117694656 73.463 0.34049 72.987 72.804 73.144 -0.47588 40 14 4 0 0 0 0.041224 2 40160 40160;40270 62.573 52.499 1 3625100 49074 8309;2522 33116 33875 57211;57212 57211 -0.012014422792390178 QAYPEYLITY 10 Unmodified _QAYPEYLITY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8115234375 2 630.810979 1259.6074 0.48565 0.00030635 -0.20015 -0.00012626 0.2855 0.00018009 630.8110321822271 80.667 0.34595 74.492 74.296 74.642 -6.1757 47 18 3 0 0 0 0.011118 2 52976 52861;52976 85.642 65.188 1 32767000 49075 8309;2522 33116 33875 57213;57214 57214 -0.012014422792390178 QAYSGIQQY 9 Unmodified _QAYSGIQQY_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.25048828125 2 529.251089 1056.48762 0.46459 0.00024589 2.5113 0.0013291 2.9759 0.001575 529.2506401578571 35.993 0.19897 35.993 35.914 36.113 0 11 9 2 0 0 0 0.047196 1 19072 19072 46.021 18.392 1 14802000 49076 5989 33117 33876 57215 57215 -0.038360108331289666 QCCDPSSF 8 Unmodified _QCCDPSSF_ 0 0 0 REV__ENST00000575992.1_1_17:79632233-79633184:-|nuORF REV__ENST00000575992.1_1_17:79632233-79633184:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.6548461914062 2 443.657121 885.299689 0.013271 5.8879E-06 -3.8519 -0.0017089 -3.8387 -0.0017031 443.65460399396153 56.285 0.31731 56.285 56.247 56.564 0 22 14 2 0 0 0 0.74163 1 31339 31339 13.508 0 1 1288700 + 49077 24148 33118 33877 57216 57216 -0.14754908353575047 QCECLYKILY 10 Unmodified _QCECLYKILY_ 0 0 0 REV__nc|ENSG00000048649|Q96T23-2|RSF1 REV__nc|ENSG00000048649|Q96T23-2|RSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.8748168945312 3 425.875249 1274.60392 -0.5158 -0.00021967 0.59778 0.00025458 0.081972 3.491E-05 425.8753709565316 28.829 0.18027 28.829 28.723 28.903 0 13 8 2 0 0 0 0.68209 1 14910 14910 4.7159 1.1289 1 1709700 + 49078 29492 33119 33878 57217 57217 -0.022401516490845097 QCFLTKMAEE 10 Unmodified _QCFLTKMAEE_ 0 0 0 nc|ENSG00000197446|P24903-2|CYP2F1;ENSG00000197446|ENST00000331105|CYP2F1 nc|ENSG00000197446|P24903-2|CYP2F1 nc|ENSG00000197446|P24903-2|CYP2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2761840820312 2 600.275392 1198.53623 -0.031973 -1.9192E-05 0.89662 0.00053822 0.86464 0.00051902 600.2755871416432 31.294 0.22635 31.294 31.152 31.379 0 16 10 2 0 0 0 0.65282 1 16296 16296 8.1555 1.4324 1 1256900 49079 9956 33120 33879 57218 57218 -0.055096015798881126 QCFRLYTQSA 10 Unmodified _QCFRLYTQSA_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.1972961425781 3 406.197491 1215.57064 NaN NaN NaN NaN NaN NaN NaN 69.8 1 69.321 68.821 69.821 -0.47903 0 0 0 0.99514 1 38158 38158 0.50596 0 1 49080 5271 33121 33880 57219 57219 -0.02852017376767435 QCFSDEQGEE 10 Unmodified _QCFSDEQGEE_ 0 0 0 nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2743986-2746461:-|nuORF;ENST00000505186.1_1_4:2743986-2747794:-|nuORF nc|ENSG00000168884|Q8NFZ5-2|TNIP2 nc|ENSG00000168884|Q8NFZ5-2|TNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1449890136719 3 391.145121 1170.41353 -0.53885 -0.00021077 -0.015747 -6.1594E-06 -0.55459 -0.00021693 391.1451506653709 15.518 0.4582 15.504 15.381 15.839 -0.014067 283 163 3 0 0 0 0.72247 1 7581 7581 0.13989 0.056541 1 1809600 49081 7808 33122 33881 57220 57220 -0.16485766777623212 QCHGCEFNTVY 11 Unmodified _QCHGCEFNTVY_ 0 0 0 ENST00000344337.10_1_3:122140911-122141163:-|nuORF ENST00000344337.10_1_3:122140911-122141163:-|nuORF ENST00000344337.10_1_3:122140911-122141163:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.757080078125 2 650.757898 1299.50124 -0.95827 -0.0006236 -0.5465 -0.00035564 -1.5048 -0.00097924 650.7578929194152 32.911 0.23849 32.911 32.79 33.029 0 24 11 3 0 0 0 0.63851 1 17225 17225 9.3831 5.4387 1 2607800 49082 12014 33123 33882 57221 57221 -0.13652844387866025 QCKCENLIM 9 Unmodified _QCKCENLIM_ 0 0 0 ENST00000523561.1_1_8:99044328-99047937:+|nuORF;nc|ENSG00000132561|O00339-4|MATN2;nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2 ENST00000523561.1_1_8:99044328-99047937:+|nuORF ENST00000523561.1_1_8:99044328-99047937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.5016174316406 3 361.166146 1080.47661 0.50153 0.00018114 2.2707 0.00082008 2.7722 0.0010012 361.16684587475265 79.147 0.24985 78.661 78.574 78.824 -0.48596 13 10 2 0 0 0 0.58865 1 43382 43382 1.0715 0 1 362900 49083 4422 33124 33883 57222 57222 -0.06041195794932719 QCLATQWACI 10 Unmodified _QCLATQWACI_ 0 0 0 REV__ENSG00000136925|ENST00000341170|TSTD2 REV__ENSG00000136925|ENST00000341170|TSTD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5109252929688 3 379.512422 1135.51544 NaN NaN NaN NaN NaN NaN NaN 21.835 1 21.835 21.335 22.335 0 0 0 0 0.99091 1 11080 11080 0.69767 0.19171 1 + 49084 20198 33125 33884 57223 57223 -0.046901471689125174 QCNLEVHVY 9 Carbamidomethyl (C) _QC(Carbamidomethyl (C))NLEVHVY_ QC(1)NLEVHVY QC(46)NLEVHVY 0 1 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2734985351562 2 581.271498 1160.52844 0.97451 0.00056646 -1.7819 -0.0010358 -0.8074 -0.00046932 581.2722129078378 47.267 0.53042 42.186 41.933 42.463 -5.0805 59 36 3 0 0 0 0.047196 1 29336 29336 46.021 26.659 1 18330000 49085 4780 33126 33885 57224 57224 486 -0.04539992785157665 QCPRFAFYK 9 Unmodified _QCPRFAFYK_ 0 0 0 ENST00000303221.9_1_5:49724015-49737091:-|nuORF ENST00000303221.9_1_5:49724015-49737091:-|nuORF ENST00000303221.9_1_5:49724015-49737091:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1956787109375 3 387.195421 1158.56443 -0.29324 -0.00011354 -1.4127 -0.00054701 -1.706 -0.00066055 387.1949941104425 53.843 0.30907 53.776 53.672 53.981 -0.066936 21 15 2 0 0 0 0.55144 1 29279 29279 2.4985 0.21571 1 2060800 49086 11591 33127 33886 57225 57225 -0.008504908176519166 QCRHDFRY 8 Unmodified _QCRHDFRY_ 0 0 0 ENST00000286298.4_1_5:149365201-149365333:+|nuORF ENST00000286298.4_1_5:149365201-149365333:+|nuORF ENST00000286298.4_1_5:149365201-149365333:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.75830078125 2 562.75635 1123.49815 NaN NaN NaN NaN NaN NaN NaN 85.957 1 85.454 84.954 85.954 -0.50307 0 0 0 0.97444 1 47040 47040 2.5775 0 1 49087 11445 33128 33887 57226 57226 -0.05866306659709153 QCRLPGAG 8 Unmodified _QCRLPGAG_ 0 0 0 ENST00000373225.7_1_9:130565640-130566634:+|nuORF ENST00000373225.7_1_9:130565640-130566634:+|nuORF ENST00000373225.7_1_9:130565640-130566634:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2039489746094 2 401.20543 800.396307 0.15085 6.0523E-05 -1.7558 -0.00070444 -1.605 -0.00064392 401.2044599615491 39.264 0.43089 39.264 39.077 39.508 0 38 20 3 0 0 0 0.80975 1 20995 20995 0.79363 0 1 5959500 49088 12406 33129 33888 57227 57227 -0.011875530114593857 QCRLPGAG 8 Unmodified _QCRLPGAG_ 0 0 0 ENST00000373225.7_1_9:130565640-130566634:+|nuORF ENST00000373225.7_1_9:130565640-130566634:+|nuORF ENST00000373225.7_1_9:130565640-130566634:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 401.20543 800.396307 -0.013482 -5.4092E-06 -5.5347 -0.0022206 -5.5482 -0.002226 401.2026103537321 39.569 0.19728 39.272 39.154 39.351 -0.29716 0.0036474 -0.0028685 NaN 0.79363 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2456400 49089 12406 33129 33888 -0.011875530114593857 QCRMCEKSYT 10 Unmodified _QCRMCEKSYT_ 0 0 0 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 ENSG00000140548|ENST00000268154|ZNF710 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.7608032226562 2 624.762126 1247.5097 NaN NaN NaN NaN NaN NaN NaN 6.5897 1 6.5986 6.0986 7.0986 0.0089307 0 0 0 1.0029 1 3300 3300 0.35063 0.043601 1 49090 5251 33130 33889 57228 57228 -0.10415613742907226 QCRPNGTVIR 10 Unmodified _QCRPNGTVIR_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.873291015625 3 381.87323 1142.59786 0.40921 0.00015627 -1.0303 -0.00039343 -0.62104 -0.00023716 381.87289831533144 30.896 0.1741 30.793 30.717 30.891 -0.10269 10 6 2 0 0 0 0.69917 1 16075 16075 1.4551 0.82829 1 1280500 + 49091 20755 33131 33890 57229 57229 0.032265109542322534 QCRPNGTVIR 10 Unmodified _QCRPNGTVIR_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.87323 1142.59786 -0.32171 -0.00012285 -1.0824 -0.00041335 -1.4041 -0.0005362 382.2069433362385 30.913 0.18377 30.913 30.811 30.995 0 0.060181 -3.7555E-05 NaN 1.4551 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1186700 + 49092 20755 33131 33890 0.032265109542322534 QCRPNGTVIR 10 Unmodified _QCRPNGTVIR_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 381.87323 1142.59786 0.40921 0.00015627 -1.0303 -0.00039343 -0.62104 -0.00023716 381.87289831533144 30.896 0.1741 30.793 30.717 30.891 -0.10269 -0.060181 2.2208E-05 NaN 1.4551 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1280500 + 49093 20755 33131 33890 0.032265109542322534 QCRRPLVLL 9 Unmodified _QCRRPLVLL_ 0 0 0 ENST00000406199.3_1_22:39176875-39178747:-|nuORF ENST00000406199.3_1_22:39176875-39178747:-|nuORF ENST00000406199.3_1_22:39176875-39178747:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5585632324219 3 366.558583 1096.65392 1.322 0.00048457 -0.33917 -0.00012432 0.98279 0.00036025 366.5585696948748 43.422 0.64721 38.657 38.419 39.066 -4.7648 144 42 4 0 0 0 0.14602 1 26232 26232 20.415 0 1 103200000 49094 12928 33132 33891 57230 57230 0.1094576386171866 QCSKPSVI 8 Carbamidomethyl (C) _QC(Carbamidomethyl (C))SKPSVI_ QC(1)SKPSVI QC(52)SKPSVI 0 1 0 ENSG00000276085|ENST00000619989|CCL3L3 ENSG00000276085|ENST00000619989|CCL3L3 ENSG00000276085|ENST00000619989|CCL3L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7392883300781 2 459.739302 917.464052 0.1865 8.574E-05 0.45127 0.00020747 0.63777 0.00029321 459.7395863660164 26.136 0.63817 23.185 22.904 23.542 -2.9511 98 37 4 0 0 0 0.32798 1 14233 14233 52.268 6.5687 1 282980000 49095 10915 33133 33892 57231 57231 960 0.002018521287027397 QCTRRFLLSF 10 Carbamidomethyl (C) _QC(Carbamidomethyl (C))TRRFLLSF_ QC(1)TRRFLLSF QC(52)TRRFLLSF 0 1 0 REV__chr16:19466233-19472088|55|11.02|0.47|4.54|+|1|TMC5,TMC5|1 REV__chr16:19466233-19472088|55|11.02|0.47|4.54|+|1|TMC5,TMC5|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.3495483398438 2 664.350614 1326.68668 0.305 0.00020263 -0.65687 -0.00043639 -0.35187 -0.00023376 664.3499724354409 101.81 0.19032 95.63 95.545 95.735 -6.1757 47 13 5 0 0 0 0.077785 1 68307 68307 51.63 15.124 1 305990000 + 49096 16791 33134 33893 57232 57232 1030 0.03639926193886822 QCTSAYNQLW 10 Unmodified _QCTSAYNQLW_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2685546875 2 607.268955 1212.52336 1.7306 0.001051 -1.4681 -0.00089152 0.26254 0.00015943 607.2678455326429 92.789 0.31323 92.819 92.675 92.989 0.030197 27 12 3 0 0 0 0.48505 1 51618 51618 17.113 4.0704 1 3007900 + 49097 18678 33135 33894 57233 57233 -0.07440296647814648 QCWWQRPVYT 10 Unmodified _QCWWQRPVYT_ 0 0 0 ENST00000269033.7_1_17:27953397-27953514:-|nuORF ENST00000269033.7_1_17:27953397-27953514:-|nuORF ENST00000269033.7_1_17:27953397-27953514:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2153625488281 3 456.216885 1365.62883 NaN NaN NaN NaN NaN NaN NaN 12.252 1 12.265 11.765 12.765 0.012355 0 0 0 1.0024 1 6044 6044 0.13989 0.066628 1 49098 11360 33136 33895 57234 57234 -0.03936335731509644 QCYMDTEQY 9 Carbamidomethyl (C) _QC(Carbamidomethyl (C))YMDTEQY_ QC(1)YMDTEQY QC(85)YMDTEQY 0 1 0 ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 ENSG00000168259|ENST00000457167|DNAJC7 MSMS AL20221201_MKP_PDAC_01 4 619.2301635742188 2 619.228639 1236.44272 NaN NaN NaN NaN NaN NaN NaN 43.406 1 38.642 38.142 39.142 -4.7648 0 0 0 0.014983 1 26363 26363 85.272 63.525 1 49099 7736 33137 33896 57235 57235 753 -0.1660394575301325 QDAEEKCEQ 9 Unmodified _QDAEEKCEQ_ 0 0 0 ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1642150878906 3 360.481844 1078.4237 -0.90517 -0.0003263 4.227 0.0015238 3.3218 0.0011975 360.81713803008347 77.847 0.20536 77.364 77.215 77.421 -0.4826 21 9 3 0 0 0 0.21052 1 42605 42605 4.1895 0 1 2649800 49100 9433 33138 33897 57236 57236 -0.11237159052416246 QDAEIKLTI 9 Unmodified _QDAEIKLTI_ 0 0 0 REV__CON__Q2UVX4 REV__CON__Q2UVX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7923583984375 2 515.792589 1029.57063 0.91006 0.0004694 -0.7995 -0.00041237 0.11057 5.7031E-05 515.7920012309145 46.139 0.31303 46.139 45.939 46.252 0 28 14 3 0 0 0 0.010301 1 25172 25172 79.596 3.8355 1 5916400 + + 49101 16872 33139 33898 57237 57237 0.05702305894828896 QDCPWYDQGF 10 Unmodified _QDCPWYDQGF_ 0 0 0 ENSG00000187959|ENST00000344935|CPSF4L ENSG00000187959|ENST00000344935|CPSF4L ENSG00000187959|ENST00000344935|CPSF4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.1666564941406 3 420.165968 1257.47607 0.29019 0.00012193 0.53351 0.00022416 0.8237 0.00034609 420.1660390394488 53.401 0.26193 53.401 53.244 53.506 0 26 11 3 0 0 0 0.70951 1 29568 29568 0.77653 0 1 5188100 49102 9613 33140 33899 57238 57238 -0.14236575918835115 QDDDLDKV 8 Unmodified _QDDDLDKV_ 0 0 0 ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1;nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF;ENST00000496816.5_1_20:62325699-62327208:+|nuORF;ENST00000504490.2_1_4:113279997-113280900:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF ENST00000480273.5_1_20:62319266-62327135:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2339782714844 2 474.219454 946.424355 NaN NaN NaN NaN NaN NaN NaN 71.409 1 71.409 70.909 71.909 0 0 0 0 0.97444 1 39776 39776 2.3027 0 1 49103 10817 33141 33900 57239 57239 -0.05099996341050428 QDDREQVHL 9 Unmodified _QDDREQVHL_ 0 0 0 ENST00000462822.1_1_10:45477980-45479333:+|nuORF;ENST00000472561.5_1_10:45467281-45480357:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4;nc|ENSG00000107551|Q9H2L5-3|RASSF4;ENSG00000107551|ENST00000340258|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF ENST00000462822.1_1_10:45477980-45479333:+|nuORF ENST00000462822.1_1_10:45477980-45479333:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5200500488281 3 380.51951 1138.5367 1.6608 0.00063196 -1.2709 -0.0004836 0.38988 0.00014836 380.5189566994753 21.626 0.30954 18.891 18.725 19.034 -2.7348 50 20 4 0 0 0 0.54444 1 11570 11570 2.7352 0.23671 1 7672100 49104 2499 33142 33901 57240 57240 -0.027027225441770497 QDDTFNWSRA 10 Unmodified _QDDTFNWSRA_ 0 0 0 REV__ENSG00000189045|ENST00000601380|ANKDD1B REV__ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8511047363281 3 413.851148 1238.53161 -0.67354 -0.00027875 0.99114 0.00041019 0.3176 0.00013144 413.85150585027344 15.385 0.24996 15.385 15.218 15.468 0 77 59 2 0 0 0 0.71276 1 7434 7434 0.62683 0 1 1159200 + 49105 23754 33143 33902 57241 57241 -0.07811026406807287 QDELVYTFG 9 Unmodified _QDELVYTFG_ 0 0 0 ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2546997070312 2 536.253297 1070.49204 0.27351 0.00014667 0.14679 7.8715E-05 0.4203 0.00022539 536.2532925677347 93.552 0.37447 93.552 93.387 93.761 0 33 21 2 0 0 0 0.51218 1 51706 51706 6.7232 0 1 877140 49106 2415 33144 33903 57242 57242 -0.04038546410242816 QDELVYTFG 9 Unmodified _QDELVYTFG_ 0 0 0 ENSG00000106304|ENST00000682466|SPAM1;nc|ENSG00000106304|P38567-2|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 ENSG00000106304|ENST00000682466|SPAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1072.059936523438 1 1071.49932 1070.49204 0.27171 0.00029114 -0.21326 -0.00022851 0.058451 6.2631E-05 1071.4994227269297 94.055 0.30801 93.635 93.435 93.743 -0.42044 28 15 2 0 0 0 0.51218 1 51320 51320 6.7232 0.51738 1 1729300 49107 2415 33144 33903 57243 57243 -0.04038546410242816 QDESHDHSF 9 Unmodified _QDESHDHSF_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.79638671875 2 551.215234 1100.41592 0.82168 0.00045292 1.5285 0.00084251 2.3501 0.0012954 551.2163064208711 39.484 0.38215 35.033 34.825 35.207 -4.4509 48 22 3 0 0 0 0.20727 1 23432 23432 4.3292 0 1 17110000 49108 5642 33145 33904 57244 57244 -0.13027550257675102 QDESLVLNL 9 Unmodified _QDESLVLNL_ 0 0 0 REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7748413085938 2 515.774396 1029.53424 0.59839 0.00030863 -0.042078 -2.1703E-05 0.55631 0.00028693 515.7745565692064 59.973 0.29789 59.973 59.839 60.137 0 24 13 2 0 0 0 0.047196 1 33432 33432 46.021 0 1 5058500 + 49109 24569 33146 33905 57245 57245 0.02065428998139396 QDESLVLNL 9 Unmodified _QDESLVLNL_ 0 0 0 REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.774396 1029.53424 0.59839 0.00030863 -0.042078 -2.1703E-05 0.55631 0.00028693 515.7745565692064 59.973 0.29789 59.973 59.839 60.137 0 0 0 NaN 46.021 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5058500 + 49110 24569 33146 33905 0.02065428998139396 QDETDLSTY 9 Unmodified _QDETDLSTY_ 0 0 0 nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 nc|ENSG00000032444|Q8IY17-5|PNPLA6 nc|ENSG00000032444|Q8IY17-5|PNPLA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2279663085938 2 536.227476 1070.4404 0.08484 4.5494E-05 0.083144 4.4584E-05 0.16798 9.0078E-05 536.2272176925428 51.781 0.47498 51.347 51.115 51.59 -0.43367 36 24 2 0 0 0 0.34999 1 27924 27924 14.838 0.25658 1 6443900 49111 593 33147 33906 57246 57246 -0.09200334894808293 QDETDLSTY 9 Unmodified _QDETDLSTY_ 0 0 0 nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6 nc|ENSG00000032444|Q8IY17-5|PNPLA6 nc|ENSG00000032444|Q8IY17-5|PNPLA6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.227476 1070.4404 0.82194 0.00044075 -0.64829 -0.00034763 0.17365 9.3118E-05 536.2270651096449 51.123 0.41036 51.123 50.959 51.369 0 -0.1121 -0.00039528 NaN 14.838 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 4868200 49112 593 33147 33906 -0.09200334894808293 QDFDELYDWEY 11 Unmodified _QDFDELYDWEY_ 0 0 0 ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-4|ADAMTSL1 ENST00000380559.7_1_9:18706652-18908543:+|nuORF ENST00000380559.7_1_9:18706652-18908543:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.71728515625 3 508.205145 1521.59361 0.64078 0.00032565 -0.53552 -0.00027216 0.10525 5.3489E-05 508.5395496898797 45.876 0.32135 45.876 45.722 46.044 0 23 15 3 0 0 0 0.30599 1 25135 25135 0.50596 0.41111 1 6260700 49113 8723 33148 33907 57247 57247 -0.14632764568978018 QDFLSTLFH 9 Unmodified _QDFLSTLFH_ 0 0 0 REV__ENST00000522142.1_1_8:38853185-38854124:-|nuORF REV__ENST00000522142.1_1_8:38853185-38854124:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2772216796875 2 554.277106 1106.53966 0.6273 0.0003477 0.3772 0.00020908 1.0045 0.00055677 554.2771207804368 48.39 0.23755 48.018 47.905 48.143 -0.37172 21 11 2 0 0 0 0.2143 1 25957 25957 21.747 5.8995 1 4698400 + 49114 28298 33149 33908 57248 57248 -0.009348474193757284 QDFNLQYVL 9 Unmodified _QDFNLQYVL_ 0 0 0 REV__ENSG00000168282|ENST00000305386|MGAT2 REV__ENSG00000168282|ENST00000305386|MGAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.291259765625 2 570.290214 1138.56587 0.73421 0.00041871 -0.33189 -0.00018928 0.40232 0.00022944 570.2901173185809 67.68 0.31688 67.198 67.053 67.37 -0.48218 25 13 2 0 0 0 0.49272 1 37059 37059 7.9102 0 1 5176000 + 49115 22299 33150 33909 57249 57249 0.0021342175209611014 QDFPLTRY 8 Unmodified _QDFPLTRY_ 0 0 0 REV__ENSG00000162971|ENST00000354611|TYW5 REV__ENSG00000162971|ENST00000354611|TYW5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.26806640625 2 520.263999 1038.51345 0.063145 3.2852E-05 2.4938 0.0012974 2.5569 0.0013303 520.2650402817138 98.853 0.28625 92.677 92.637 92.923 -6.1757 32 19 2 0 0 0 8.7369 1 65665 65665 13.906 2.2658 1 207140000 + 49116 21712 33151 33910 57250 57250 -0.0042711659086762666 QDGKELTL 8 Unmodified _QDGKELTL_ 0 0 0 REV__nc|ENSG00000163554|P02549-2|SPTA1 REV__nc|ENSG00000163554|P02549-2|SPTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2425537109375 2 452.242732 902.470912 -0.078296 -3.5409E-05 -0.26206 -0.00011852 -0.34036 -0.00015393 452.2425599703678 20.722 0.63666 20.722 20.444 21.08 0 141 80 3 0 0 0 0.42423 1 10495 10495 42.095 0 1 4598000 + 49117 21785 33152 33911 57251 57251 0.015774882808955226 QDGSSRLPSCE 11 Unmodified _QDGSSRLPSCE_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.758056640625 2 589.758952 1177.50335 -0.17913 -0.00010564 0.35657 0.00021029 0.17744 0.00010465 589.759131461479 31.372 0.60065 31.402 31.199 31.8 0.030106 37 26 2 0 0 0 0.66968 2 16520 16520;16651 7.1017 2.7725 1 5136700 49118 740 33153 33912 57252;57253 57252 -0.07830092378412701 QDGSSRLPSCE 11 Unmodified _QDGSSRLPSCE_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7604370117188 2 589.758952 1177.50335 0.04934 2.9099E-05 1.0416 0.00061429 1.0909 0.00064339 589.7594858225284 34.958 0.36789 34.985 34.796 35.164 0.027401 24 16 2 0 0 0 0.5229 1 18449 18449 15.248 0.41021 1 1761300 49119 740 33153 33912 57254 57254 -0.07830092378412701 QDGSSRLPSCE 11 Unmodified _QDGSSRLPSCE_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7588500976562 2 589.758952 1177.50335 0.21331 0.0001258 0.10018 5.9081E-05 0.31349 0.00018488 589.7589982978038 38.769 0.323 38.78 38.618 38.941 0.011456 36 15 3 0 0 0 0.61059 1 20603 20603 10.8 0.72558 1 10407000 49120 740 33153 33912 57255 57255 -0.07830092378412701 QDIKAQIIF 9 Unmodified _QDIKAQIIF_ 0 0 0 REV__ENSG00000155816|ENST00000319653|FMN2 REV__ENSG00000155816|ENST00000319653|FMN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3106079101562 2 538.310949 1074.60735 -0.17316 -9.3212E-05 -0.29428 -0.00015842 -0.46744 -0.00025163 538.3106889485427 41.8 0.43108 41.798 41.618 42.049 -0.0017891 59 20 4 0 0 0 0.042911 1 22392 22392 48.346 4.5735 1 33970000 + 49121 21289 33154 33913 57256 57256 0.0730260251141317 QDIKAQIIF 9 Unmodified _QDIKAQIIF_ 0 0 0 REV__ENSG00000155816|ENST00000319653|FMN2 REV__ENSG00000155816|ENST00000319653|FMN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7680053710938 2 538.310949 1074.60735 -0.17316 -9.3212E-05 -0.29428 -0.00015842 -0.46744 -0.00025163 538.3106889485427 41.8 0.43108 41.798 41.618 42.049 -0.0017891 59 20 4 0 0 0 0.17275 1 22415 22415 21.747 9.2151 1 33970000 + 49122 21289 33154 33913 57257 57257 0.0730260251141317 QDILQHTQT 9 Unmodified _QDILQHTQT_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000464622.5_1_6:121401919-121436400:-|nuORF ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2745971679688 2 542.275095 1082.53564 NaN NaN NaN NaN NaN NaN NaN 63.098 1 63.098 62.598 63.598 0 0 0 0 0.46232 1 35199 35199 17.113 0.96379 1 49123 5772 33155 33914 57258 57258 -0.0023293691310755094 QDKEACVGTNN 11 Unmodified _QDKEACVGTNN_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5085144042969 3 393.508393 1177.50335 0.47319 0.0001862 0.50643 0.00019928 0.97962 0.00038549 393.50871727612076 24.661 0.36255 21.778 21.541 21.904 -2.8831 51 19 4 0 0 0 0.69316 1 13366 13366 2.2527 0.34635 1 9310700 49124 7463 33156 33915 57259 57259 -0.07830092378389963 QDKEQSNPY 9 Unmodified _QDKEQSNPY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENST00000460262.1_1_2:11334380-11335170:-|nuORF ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.74853515625 2 554.74891 1107.48327 NaN NaN NaN NaN NaN NaN NaN 47.652 1 47.652 47.152 48.152 0 0 0 0 0.6557 1 26098 26098 10.824 0 1 49125 4591 33157 33916 57260 57260 -0.06617520046711434 QDLDQQFLFMI 11 Unmodified _QDLDQQFLFMI_ 0 0 0 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 REV__nc|ENSG00000197415|Q14D04-2|VEPH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3148803710938 2 699.34212 1396.66969 0.095054 6.6475E-05 -2.9093 -0.0020346 -2.8142 -0.0019681 699.3402060420337 48.058 0.21313 48.058 47.936 48.149 0 25 10 3 0 0 0 0.29578 1 26296 26296 6.6304 1.3335 1 10485000 + 49126 29887 33158 33917 57261 57261 -0.012780392025661058 QDLEPAEGGPV 11 Unmodified _QDLEPAEGGPV_ 0 0 0 ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000452089.5_3_7:99950889-99956429:+|nuORF ENST00000452089.5_3_7:99950889-99956429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7685546875 2 556.266936 1110.51932 0.68394 0.00038045 -2.9666 -0.0016502 -2.2826 -0.0012697 556.2648414297412 38.397 0.21526 38.397 38.32 38.535 0 24 17 2 0 0 0 0.48615 1 20559 20559 17.113 0.96379 1 5266400 49127 13537 33159 33918 57262 57262 -0.03152062869844485 QDLLQLQY 8 Unmodified _QDLLQLQY_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7715759277344 2 510.771657 1019.52876 0.21422 0.00010942 1.3466 0.0006878 1.5608 0.00079722 510.77265353364345 53.856 0.53655 53.389 53.031 53.567 -0.46664 59 26 4 0 0 0 0.38465 1 29126 29126 46.021 2.1627 1 17177000 49128 5256;9204 33160 33919 57263 57263 0.019777502063334396 QDLLQLQY 8 Unmodified _QDLLQLQY_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000561086.1_1_15:91040446-91043337:+|nuORF;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7735290527344 2 510.771657 1019.52876 0.91161 0.00046562 0.40748 0.00020813 1.3191 0.00067375 510.7719796902701 61.065 0.56929 54.918 54.667 55.236 -6.1478 65 29 3 0 0 0 0.38465 1 39217 39217 46.021 1.6139 1 99501000 49129 5256;9204 33160 33919 57264 57264 0.019777502063334396 QDLSFRSSPA 10 Unmodified _QDLSFRSSPA_ 0 0 0 ENST00000269025.8_1_17:45909270-45909508:+|nuORF ENST00000269025.8_1_17:45909270-45909508:+|nuORF ENST00000269025.8_1_17:45909270-45909508:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.2755737304688 2 554.275095 1106.53564 0.31642 0.00017538 -0.14719 -8.1585E-05 0.16923 9.3799E-05 554.2750875210685 23.846 0.18261 23.867 23.762 23.944 0.021185 14 7 2 0 0 0 0.18439 1 12271 12271 35.612 4.9088 1 2101800 49130 11359 33161 33920 57265 57265 -0.013369369130941777 QDLVSVVLPRR 11 Unmodified _QDLVSVVLPRR_ 0 0 0 ENST00000279281.7_2_11:64879073-64879157:+|nuORF ENST00000279281.7_2_11:64879073-64879157:+|nuORF ENST00000279281.7_2_11:64879073-64879157:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8272705078125 2 641.385511 1280.75647 2.2604 0.0014498 -1.5564 -0.00099826 0.70394 0.0004515 641.3844393713968 95.601 0.62479 95.605 95.379 96.004 0.004158 44 23 3 0 0 0 0.30586 1 53257 53257 0.96228 0 1 2448500 49131 11404 33162 33921 57266 57266 0.1273212813414375 QDLWHLQFHQ 10 Unmodified _QDLWHLQFHQ_ 0 0 0 ENST00000419007.5_1_3:50311657-50311978:+|nuORF;ENST00000456210.5_1_3:50310607-50311978:+|nuORF ENST00000419007.5_1_3:50311657-50311978:+|nuORF ENST00000419007.5_1_3:50311657-50311978:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.888427734375 3 451.222916 1350.64692 0.1365 6.1593E-05 -0.82163 -0.00037074 -0.68513 -0.00030915 451.2227791914504 41.718 0.22757 41.716 41.573 41.801 -0.0017929 24 10 3 0 0 0 0.23922 1 22285 22285 4.4062 0.28952 1 29576000 49132 13084 33163 33922 57267 57267 -0.014378774851593334 QDMKFRELN 9 Unmodified _QDMKFRELN_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7950439453125 2 590.792598 1179.57064 NaN NaN NaN NaN NaN NaN NaN 71.954 1 71.954 71.454 72.454 0 0 0 0 0.7818 1 40071 40071 6.7232 1.8262 1 49133 10553 33164 33923 57268 57268 -0.011960173767647575 QDMNHEYMY 9 Unmodified _QDMNHEYMY_ 0 0 0 nc|ENSG00000283063|P0DPF7|TRBV6-3;nc|ENSG00000253188|A0A0A0MS04|TRBV6-7 nc|ENSG00000283063|P0DPF7|TRBV6-3 nc|ENSG00000283063|P0DPF7|TRBV6-3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8243103027344 3 410.823324 1229.44814 1.351 0.00055501 3.4066 0.0013995 4.7575 0.0019545 410.82391951381277 63.771 0.30176 57.596 57.45 57.752 -6.1757 27 16 2 0 0 0 0.55144 1 41302 41302 2.4985 0 1 9242000 49134 16581 33165 33924 57269 57269 -0.15740222170506968 QDPAVSVAL 9 Unmodified _QDPAVSVAL_ 0 0 0 nc|ENSG00000211663|P01714|IGLV3-19 nc|ENSG00000211663|P01714|IGLV3-19 nc|ENSG00000211663|P01714|IGLV3-19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2454833984375 2 450.245275 898.475997 0.66338 0.00029868 -0.060314 -2.7156E-05 0.60307 0.00027153 450.24522758970033 60.851 0.35394 60.851 60.67 61.024 0 32 14 3 0 0 0 0.43463 1 33995 33995 10.824 0.75 1 3536600 49135 16523 33166 33925 57270 57270 0.022697921435110402 QDPIECLFSF 10 Unmodified _QDPIECLFSF_ 0 0 0 nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-4|OGG1;nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-3|OGG1;ENST00000432857.2_1_3:9792686-9793638:+|nuORF nc|ENSG00000114026|O15527-5|OGG1 nc|ENSG00000114026|O15527-5|OGG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8427734375 2 599.776082 1197.53761 0.13654 8.1893E-05 -1.5767 -0.00094569 -1.4402 -0.00086379 599.7752828926263 61.152 0.29978 61.152 60.975 61.275 0 27 12 3 0 0 0 0.23412 1 34132 34132 9.3831 0 1 588760 49136 16130 33167 33926 57271 57271 -0.053256442195333875 QDPKGNRI 8 Unmodified _QDPKGNRI_ 0 0 0 ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M ENSG00000175899|ENST00000318602|A2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2541198730469 2 464.253966 926.493378 0.37829 0.00017562 -0.13853 -6.4313E-05 0.23976 0.00011131 464.2537974060917 84.813 0.43922 84.314 84.092 84.531 -0.49961 50 18 4 0 0 0 0.81007 1 46447 46447 0.6015 0 1 3626400 49137 8549 33168 33927 57272 57272 0.027191324691784757 QDPPPELYF 9 Unmodified _QDPPPELYF_ 0 0 0 nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT;nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT nc|ENSG00000164362|O14746-4|TERT nc|ENSG00000164362|O14746-4|TERT MSMS AL20221201_MKP_PDAC_01 4 553.312255859375 2 553.263665 1104.51278 NaN NaN NaN NaN NaN NaN NaN 82.033 1 75.857 75.357 76.357 -6.1757 0 0 0 0.6306 1 53870 53870 11.64 0 1 49138 7187 33169 33928 57273 57273 -0.03529956030570247 QDPPVGGL 8 Unmodified _QDPPVGGL_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5 REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.184326171875 2 391.705786 781.397018 -0.10682 -4.1843E-05 1.901 0.00074465 1.7942 0.00070281 391.7064392784101 35.122 0.17159 35.149 35.039 35.211 0.027405 13 7 2 0 0 0 8.7369 1 18491 18491 2.8892 0 1 1206000 + 49139 19736 33170 33929 57274 57274 -0.0024243509075176917 QDQGDMPRVY 10 Unmodified _QDQGDMPRVY_ 0 0 0 REV__nc|ENSG00000155966|P51816-2|AFF2 REV__nc|ENSG00000155966|P51816-2|AFF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.76953125 2 604.771862 1207.52917 -0.1784 -0.00010789 -2.0637 -0.0012481 -2.2421 -0.001356 604.7701746848461 55.898 0.21961 55.42 55.3 55.52 -0.47798 19 10 3 0 0 0 0.63399 1 30386 30386 9.3831 2.66 1 1618900 + 49140 21301 33171 33930 57275 57275 -0.06629198136124614 QDQLFLQSAMQ 11 Unmodified _QDQLFLQSAMQ_ 0 0 0 REV__ENSG00000044446|ENST00000379942|PHKA2 REV__ENSG00000044446|ENST00000379942|PHKA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8797607421875 3 436.879939 1307.61799 NaN NaN NaN NaN NaN NaN NaN 86.134 1 86.134 85.634 86.634 0 0 0 0 0.94287 1 47717 47717 0.45452 0 1 + 49141 17215 33172 33931 57276 57276 -0.02351782896471377 QDQSASVDMVF 11 Unmodified _QDQSASVDMVF_ 0 0 0 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.516357421875 3 409.516777 1225.5285 -0.18202 -7.454E-05 -0.87051 -0.00035649 -1.0525 -0.00043103 409.51679246914335 15.751 0.070699 15.756 15.725 15.796 0.0057774 8 5 2 0 0 0 0.72952 1 7873 7873 0.50596 0 1 324750 49142 5646 33173 33932 57277 57277 -0.07524037575853981 QDREEGSNTS 10 Unmodified _QDREEGSNTS_ 0 0 0 REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF REV__ENST00000443945.6_1_13:47127426-47279607:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7385864257812 2 561.736531 1121.45851 0.34728 0.00019508 2.4017 0.0013491 2.749 0.0015442 561.7377819352998 82.464 0.31633 82.464 82.269 82.585 0 21 12 2 0 0 0 0.71535 1 45722 45722 1.1933 0 1 479140 + 49143 20139 33174 33933 57278 57278 -0.09736199920075705 QDRLRPTA 8 Unmodified _QDRLRPTA_ 0 0 0 nc|ENSG00000072195|Q15772-1|SPEG;ENSG00000072195|ENST00000312358|SPEG nc|ENSG00000072195|Q15772-1|SPEG nc|ENSG00000072195|Q15772-1|SPEG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5297241210938 1 956.527204 955.519927 0.23735 0.00022703 1.902 0.0018193 2.1394 0.0020464 956.5293643037314 103.33 0.13078 103.22 103.12 103.25 -0.10458 7 5 2 0 0 0 0.80722 1 56369 56369 2.3027 0 1 337240 49144 1075 33175 33934 57279 57279 0.04038821360518341 QDRLVFDVFD 10 Unmodified _QDRLVFDVFD_ 0 0 0 REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2 REV__nc|ENSG00000111846|Q8N0V5-3|GCNT2 MSMS AL20221201_MKP_PDAC_01 4 418.5455932617188 3 418.543544 1252.6088 NaN NaN NaN NaN NaN NaN NaN 22.247 1 19.512 19.012 20.012 -2.7348 0 0 0 0.97855 1 11958 11958 1.4551 0.44154 1 + 49145 29574 33176 33935 57280 57280 -0.007398081904739229 QDRNQLPR 8 Unmodified _QDRNQLPR_ 0 0 0 REV__nc|ENSG00000131089|O43307-2|ARHGEF9 REV__nc|ENSG00000131089|O43307-2|ARHGEF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.5250244140625 2 513.775597 1025.53664 NaN NaN NaN NaN NaN NaN NaN 38.586 1 38.598 38.098 39.098 0.011452 0 0 0 0.96305 1 20525 20525 7.9102 0 1 + 49146 19769 33177 33936 57281 57281 0.024893222464470455 QDRNQLPR 8 Unmodified _QDRNQLPR_ 0 0 0 REV__nc|ENSG00000131089|O43307-2|ARHGEF9 REV__nc|ENSG00000131089|O43307-2|ARHGEF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7750244140625 2 513.775597 1025.53664 NaN NaN NaN NaN NaN NaN NaN 38.613 1 38.625 38.125 39.125 0.011452 0 0 0 0.94061 1 20539 20539 12.532 0 1 + 49147 19769 33177 33936 57282 57282 0.024893222464470455 QDRVGPRLPDV 11 Unmodified _QDRVGPRLPDV_ 0 0 0 REV__AluSz6_dup43940|chr19:17814301-17814610:-|2.045573920306524|0.3287952390102888|2.64|177.0|10|3|sense REV__AluSz6_dup43940|chr19:17814301-17814610:-|2.045573920306524|0.3287952390102888|2.64|177.0|10|3|sense MSMS AL20221201_MKP_PDAC_01 4 417.8969421386719 3 417.898321 1250.67313 NaN NaN NaN NaN NaN NaN NaN 19.713 1 17.057 16.557 17.557 -2.6564 0 0 0 0.94082 1 10465 10465 1.9275 1.3007 1 + 49148 16721 33178 33937 57283 57283 0.057823916863071645 QDSEDEEERL 10 Unmodified _QDSEDEEERL_ 0 0 0 nc|ENSG00000156374|Q9BYE7-3|PCGF6;ENSG00000156374|ENST00000369847|PCGF6 nc|ENSG00000156374|Q9BYE7-3|PCGF6 nc|ENSG00000156374|Q9BYE7-3|PCGF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.17822265625 3 417.177478 1248.5106 1.3823 0.00057666 -0.33992 -0.00014181 1.0424 0.00043486 417.1771897176779 19.845 0.29343 17.189 17.058 17.351 -2.6564 38 17 3 0 0 0 0.71042 1 10518 10518 1.7423 0.41263 1 6656600 49149 6450 33179 33938 57284 57284 -0.1037108129698936 QDSIQWVY 8 Unmodified _QDSIQWVY_ 0 0 0 ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2 ENSG00000046889|ENST00000288368|PREX2 ENSG00000046889|ENST00000288368|PREX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.2586059570312 2 519.748182 1037.48181 1.1051 0.00057435 -0.073244 -3.8068E-05 1.0318 0.00053629 519.7476551398616 72.059 0.15264 65.883 65.745 65.898 -6.1757 10 8 2 0 0 0 8.7369 1 47079 47079 12.532 0 1 21740000 49150 677 33180 33939 57285 57285 -0.03543109344809636 QDTEEDEEE 9 Unmodified _QDTEEDEEE_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.1989135742188 2 562.199113 1122.38367 0.20874 0.00011735 -0.99896 -0.00056161 -0.79022 -0.00044426 562.1987061704749 49.012 0.3861 49.012 48.828 49.215 0 93 18 7 0 0 0 0.51218 1 27003 27003 6.7232 0 1 97802000 49151 1552 33181 33940 57286 57286 -0.1726242724198528 QDTFLPFEI 9 Unmodified _QDTFLPFEI_ 0 0 0 ENSG00000234469|ENST00000445307|CLDN34 ENSG00000234469|ENST00000445307|CLDN34 ENSG00000234469|ENST00000445307|CLDN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2791137695312 2 555.279315 1108.54408 0.30507 0.0001694 3.4208 0.0018995 3.7258 0.0020689 555.2801315643396 56.938 0.36441 56.452 56.329 56.694 -0.48554 29 16 3 0 0 0 0.14 1 30964 30964 29.082 3.6823 1 6041800 49152 10634 33182 33941 57287 57287 -0.005853829964735269 QDTGHYLCFY 10 Unmodified _QDTGHYLCFY_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1773986816406 3 416.178096 1245.51246 -0.57795 -0.00024053 -1.4243 -0.00059278 -2.0023 -0.00083331 416.1774424026159 41.074 0.42979 41.074 40.895 41.325 0 59 25 3 0 0 0 0.70895 1 22161 22161 1.9064 0.71303 1 17956000 49153 5837 33183 33942 57288 57288 -0.10047699022084089 QDTLIHLIKND 11 Unmodified _QDTLIHLIKND_ 0 0 0 ENST00000558034.1_1_3:53321600-53322346:-|nuORF;nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENSG00000272886|ENST00000610213|DCP1A ENST00000558034.1_1_3:53321600-53322346:-|nuORF ENST00000558034.1_1_3:53321600-53322346:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2416381835938 3 437.241865 1308.70376 0.42446 0.00018559 -0.46772 -0.00020451 -0.043266 -1.8918E-05 437.2418541084582 25.315 0.086224 25.339 25.314 25.401 0.024429 6 4 2 0 0 0 0.68282 1 13111 13111 5.8681 0.46543 1 14694000 49154 10891 33184 33943 57289 57289 0.06176125280694578 QDTLIHLIKND 11 Unmodified _QDTLIHLIKND_ 0 0 0 ENST00000558034.1_1_3:53321600-53322346:-|nuORF;nc|ENSG00000272886|Q9NPI6-2|DCP1A;ENSG00000272886|ENST00000610213|DCP1A ENST00000558034.1_1_3:53321600-53322346:-|nuORF ENST00000558034.1_1_3:53321600-53322346:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2425231933594 3 437.241865 1308.70376 0.39995 0.00017488 0.49675 0.0002172 0.8967 0.00039208 437.2420867488495 28.219 0.79435 28.249 27.775 28.569 0.029566 82 32 4 0 0 0 0.68282 2 14741 14635;14741 5.8681 3.2369 1 31735000 49155 10891 33184 33943 57290;57291 57291 0.06176125280694578 QDTTEFYAV 9 Unmodified _QDTTEFYAV_ 0 0 0 REV__ENSG00000170456|ENST00000389082|DENND5B REV__ENSG00000170456|ENST00000389082|DENND5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2442626953125 2 537.242929 1072.47131 1.0633 0.00057125 0.25513 0.00013707 1.3184 0.00070832 537.2431957618079 59.186 0.34147 53.111 52.953 53.295 -6.0745 29 18 2 0 0 0 0.06294 1 37931 37931 41.84 1.8899 1 34527000 + 49156 22483 33185 33944 57292 57292 -0.06203136789918062 QDTYNVAIR 9 Unmodified _QDTYNVAIR_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7991943359375 2 540.277638 1078.54072 -0.096275 -5.2015E-05 -1.4641 -0.00079103 -1.5604 -0.00084305 540.7785682289424 54.445 0.095901 53.979 53.948 54.044 -0.46664 6 4 2 0 0 0 0.20139 1 29499 29499 10.824 0 1 1353600 49157 10120 33186 33945 57293 57293 0.004593669495079666 QDVHIKAVLR 10 Unmodified _QDVHIKAVLR_ 0 0 0 nc|ENSG00000171587|O60469-2|DSCAM;ENSG00000171587|ENST00000400454|DSCAM nc|ENSG00000171587|O60469-2|DSCAM nc|ENSG00000171587|O60469-2|DSCAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.853759765625 2 589.853847 1177.69314 0.6822 0.0004024 1.1789 0.00069536 1.8611 0.0010978 589.8540982313708 22.185 0.24758 19.45 19.274 19.522 -2.7348 16 13 2 0 0 0 0.52659 1 11926 11926 12.241 0 1 1137000 49158 8117 33187 33946 57294 57294 0.11140187416935987 QDVKDSMRM 9 Unmodified _QDVKDSMRM_ 0 0 0 ENSG00000141748|ENST00000269586|ARL5C ENSG00000141748|ENST00000269586|ARL5C ENSG00000141748|ENST00000269586|ARL5C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7786254882812 2 555.257533 1108.50051 1.5351 0.00085239 -1.5621 -0.00086734 -0.026929 -1.4953E-05 555.2567441123787 58.806 0.3185 52.732 52.635 52.953 -6.0745 21 17 2 0 0 0 0.18735 1 37853 37853 13.615 1.3742 1 9361500 49159 5373 33188 33947 57295 57295 -0.04939639036911103 QDVNSPLRY 9 Unmodified _QDVNSPLRY_ 0 0 0 REV__ENSG00000160202|ENST00000291554|CRYAA REV__ENSG00000160202|ENST00000291554|CRYAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.279296875 2 546.277638 1090.54072 1.0373 0.00056667 -1.8218 -0.00099522 -0.7845 -0.00042855 546.2781345683094 71.338 1.6597 65.162 64.826 66.486 -6.1757 129 86 4 0 0 0 0.34999 1 47040 47040 14.838 0.93222 1 78360000 + 49160 21522 33189 33948 57296 57296 -0.0009263305048534676 QDVSQMYENI 10 Unmodified _QDVSQMYENI_ 0 0 0 ENSG00000101049|ENST00000373100|SGK2;nc|ENSG00000101049|Q9HBY8-3|SGK2;nc|ENSG00000101049|Q9HBY8-1|SGK2 ENSG00000101049|ENST00000373100|SGK2 ENSG00000101049|ENST00000373100|SGK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5173645019531 3 409.516777 1225.5285 NaN NaN NaN NaN NaN NaN NaN 85.248 1 84.747 84.247 85.247 -0.5015 0 0 0 0.97302 1 46644 46644 1.7423 0 1 49161 1905 33190 33949 57297 57297 -0.07524037575831244 QDVTHHWISFS 11 Unmodified _QDVTHHWISFS_ 0 0 0 ENSG00000187678|ENST00000434127|SPRY4;nc|ENSG00000187678|Q9C004-2|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.822021484375 2 678.820201 1355.62585 NaN NaN NaN NaN NaN NaN NaN 29.724 1 29.644 29.144 30.144 -0.080429 0 0 0 0.66488 1 15399 15399 18.373 6.1324 1 49162 9578 33191 33950 57298 57298 -0.03773887584679869 QDWLGVSRQ 9 Unmodified _QDWLGVSRQ_ 0 0 0 ENST00000549413.1_1_12:56355068-56359795:-|nuORF;ENST00000550590.5_1_12:56352149-56359825:-|nuORF;nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL ENST00000549413.1_1_12:56355068-56359795:-|nuORF ENST00000549413.1_1_12:56355068-56359795:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2732543945312 2 544.777805 1087.54106 -0.35385 -0.00019277 -1.7413 -0.0009486 -2.0951 -0.0011414 545.2759498737937 55.899 0.19975 55.83 55.666 55.866 -0.068737 17 10 2 0 0 0 0.46501 1 30296 30296 9.3831 0 1 4477100 49163 15150 33192 33951 57299 57299 0.0007878666935994261 QDWQFLAG 8 Unmodified _QDWQFLAG_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7295532226562 2 482.729792 963.445031 0.21225 0.00010246 -0.81207 -0.00039201 -0.59982 -0.00028955 482.72937814230517 62.42 0.29853 62.42 62.29 62.589 0 37 20 2 0 0 0 0.64853 1 34792 34792 21.747 1.293 1 7100900 + 49164 22625 33193 33952 57300 57300 -0.0381536117071164 QDWWLAWNL 9 Unmodified _QDWWLAWNL_ 0 0 0 REV__ENSG00000104133|ENST00000261866|SPG11 REV__ENSG00000104133|ENST00000261866|SPG11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.298583984375 2 616.298373 1230.58219 NaN NaN NaN NaN NaN NaN NaN 82.198 1 81.702 81.202 82.202 -0.4952 0 0 0 0.84564 1 45002 45002 2.0598 0.21551 1 + 49165 18338 33194 33953 57301 57301 -0.023874522911683016 QDYIRGYVL 9 Unmodified _QDYIRGYVL_ 0 0 0 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 ENSG00000169594|ENST00000345382|BNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7984619140625 2 563.798206 1125.58186 NaN NaN NaN NaN NaN NaN NaN 58.733 1 58.733 58.233 59.233 0 0 0 0 0.50124 1 32705 32705 15.847 0 1 49166 7888 33195 33954 57302 57302 0.024091279889944417 QEAAAAER 8 Unmodified _QEAAAAER_ 0 0 0 ENST00000422920.1_1_20:30310625-30310844:-|nuORF ENST00000422920.1_1_20:30310625-30310844:-|nuORF ENST00000422920.1_1_20:30310625-30310844:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.8736572265625 2 423.209224 844.403895 NaN NaN NaN NaN NaN NaN NaN 18.372 1 18.372 17.872 18.872 0 0 0 0 0.97444 1 9129 9129 2.5775 0 1 49167 13122 33196 33955 57303 57303 -0.024531222102041284 QEAKPVYKL 9 Unmodified _QEAKPVYKL_ 0 0 0 REV__ENSG00000091482|ENST00000379494|SMPX REV__ENSG00000091482|ENST00000379494|SMPX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2404174804688 2 538.310949 1074.60735 0.23041 0.00012403 -0.31028 -0.00016703 -0.079868 -4.2994E-05 538.3108663764127 63.65 0.28497 63.163 62.969 63.254 -0.48617 23 12 2 0 0 0 0.18118 1 34740 34740 9.3831 0 1 1890200 + 49168 17891 33197 33956 57304 57304 0.0730260251141317 QEALPPQL 8 Unmodified _QEALPPQL_ 0 0 0 ENST00000479835.1_1_7:75362785-75368238:-|nuORF ENST00000479835.1_1_7:75362785-75368238:-|nuORF ENST00000479835.1_1_7:75362785-75368238:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.2493286132812 2 448.247818 894.481082 NaN NaN NaN NaN NaN NaN NaN 65.557 1 59.381 58.881 59.881 -6.1757 0 0 0 0.41481 1 42558 42558 52.268 3.9225 1 49169 14047 33198 33957 57305 57305 0.029620960061379265 QEANEKFCL 9 Unmodified _QEANEKFCL_ 0 0 0 REV__nc|ENSG00000292348|P14209-3|CD99 REV__nc|ENSG00000292348|P14209-3|CD99 MSMS AL20221201_MKP_PDAC_01 4 541.2464599609375 2 541.252774 1080.491 NaN NaN NaN NaN NaN NaN NaN 73.682 1 67.506 67.006 68.006 -6.1757 0 0 0 0.43505 1 48179 48179 18.135 3.5533 1 + 49170 16933 33199 33958 57306 57306 -0.0460308405079104 QEANMKEEL 9 Unmodified _QEANMKEEL_ 0 0 0 REV__ENST00000476050.5_1_1:209941981-209948930:+|nuORF REV__ENST00000476050.5_1_1:209941981-209948930:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.1622924804688 2 546.255514 1090.49647 0.85181 0.00046531 1.8403 0.0010053 2.6921 0.0014706 546.2578942340057 42.469 0.088127 37.784 37.732 37.82 -4.6846 6 5 2 0 0 0 0.17275 1 25658 25658 10.824 0.75 1 7127500 + 49171 17038 33200 33959 57307 57307 -0.04515405258962346 QEAQQSGR 8 Unmodified _QEAQQSGR_ 0 0 0 REV__ENST00000588764.5_2_19:14044750-14046811:-|nuORF REV__ENST00000588764.5_2_19:14044750-14046811:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2188720703125 2 452.21758 902.420607 NaN NaN NaN NaN NaN NaN NaN 35.739 1 35.764 35.264 36.264 0.024967 0 0 0 0.96305 1 18907 18907 7.9102 0 1 + 49172 29127 33201 33960 57308 57308 -0.03450621324225267 QEASLRFTL 9 Unmodified _QEASLRFTL_ 0 0 0 ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7900390625 2 532.790381 1063.56621 -0.34695 -0.00018485 0.15399 8.2045E-05 -0.19296 -0.0001028 532.7904705433323 61.035 0.36205 60.546 60.353 60.715 -0.48932 48 17 4 0 0 0 0.047196 1 33286 33286 46.021 4.1813 1 58567000 49173 15697 33202 33961 57309 57309 0.036968414719467546 QEASLRFTL 9 Unmodified _QEASLRFTL_ 0 0 0 ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF ENST00000591292.5_1_16:4851502-4851742:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.790381 1063.56621 0.33298 0.00017741 -0.46261 -0.00024647 -0.12964 -6.9069E-05 532.7901178013699 60.711 0.23152 60.667 60.533 60.765 -0.04351 0.062468 -0.00054071 NaN 46.021 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3997200 49174 15697 33202 33961 0.036968414719467546 QECDCDESHCG 11 Unmodified _QECDCDESHCG_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.18115234375 2 613.181362 1224.34817 NaN NaN NaN NaN NaN NaN NaN 11.407 1 11.407 10.907 11.907 0 0 0 0 0.9435 1 5410 5410 0 0 1 + 49175 22166 33203 33962 57310 57310 -0.2550282756665183 QECLTLWVF 9 Unmodified _QECLTLWVF_ 0 0 0 nc|ENSG00000160505|Q96MN2-3|NLRP4;nc|ENSG00000160505|Q96MN2-2|NLRP4 nc|ENSG00000160505|Q96MN2-3|NLRP4 nc|ENSG00000160505|Q96MN2-3|NLRP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2831420898438 2 569.78371 1137.55287 0.59055 0.00033648 1.5553 0.00088616 2.1458 0.0012226 569.7849035751572 53.285 0.3134 53.285 53.039 53.353 0 15 13 2 0 0 0 0.20139 1 29550 29550 10.824 1.4765 1 1053600 49176 16317 33204 33963 57311 57311 -0.010407326316681065 QEDERQQSH 9 Unmodified _QEDERQQSH_ 0 0 0 REV__SMTN|p.A73D|1|0.09|ENSG00000183963|chr22:31088530-31088530|C/A|missense_variant REV__SMTN|p.A73D|1|0.09|ENSG00000183963|chr22:31088530-31088530|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8889770507812 3 386.170769 1155.49048 0.47686 0.00018415 1.0875 0.00041997 1.5644 0.00060412 386.50552364508314 53.579 0.13935 53.128 53.046 53.185 -0.45173 10 6 2 0 0 0 0.20727 1 28955 28955 2.4985 0.75621 1 1179100 + 49177 30104 33205 33964 57312 57312 -0.08104787446268347 QEDPLFLHC 9 Unmodified _QEDPLFLHC_ 0 0 0 REV__nc|ENSG00000163399|P05023-2|ATP1A1 REV__nc|ENSG00000163399|P05023-2|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2552490234375 2 551.255317 1100.49608 0.40563 0.0002236 0.54615 0.00030107 0.95178 0.00052467 551.2558250671755 92.037 0.39375 92.037 91.798 92.192 0 88 24 5 0 0 0 0.59218 1 50803 50803 1.8442 1.0506 1 3397000 + 49178 21760 33206 33965 57313 57313 -0.05014780188162149 QEEAESEETH 10 Unmodified _QEEAESEETH_ 0 0 0 REV__MAPRE2|p.P310S|1|0.14|ENSG00000166974|chr18:35140313-35140313|C/T|missense_variant REV__MAPRE2|p.P310S|1|0.14|ENSG00000166974|chr18:35140313-35140313|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 1188.467041015625 1 1188.46512 1187.45784 1.0517 0.00125 1.47 0.001747 2.5217 0.002997 1188.4648369150536 71.282 0.12552 65.106 65.026 65.151 -6.1757 6 5 2 0 0 0 0.72044 1 46600 46600 0.35063 0 1 28654000 + 49179 29457 33207 33966 57314 57314 -0.12839039359801063 QEEEEEQELIR 11 Unmodified _QEEEEEQELIR_ 0 0 0 REV__nc|ENSG00000087087|Q9BXP5-5|SRRT REV__nc|ENSG00000087087|Q9BXP5-5|SRRT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.333740234375 2 716.333535 1430.65252 NaN NaN NaN NaN NaN NaN NaN 89.725 1 89.725 89.225 90.225 0 0 0 0 0.94313 1 49644 49644 0.26902 0 1 + 49180 17776 33208 33967 57315 57315 -0.04558288274643019 QEEEENVEAP 10 Unmodified _QEEEENVEAP_ 0 0 0 REV__ENSG00000138771|ENST00000296043|SHROOM3 REV__ENSG00000138771|ENST00000296043|SHROOM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2481079101562 2 587.24894 1172.48333 0.59867 0.00035157 -1.81 -0.0010629 -1.2114 -0.00071136 587.2484626498416 51.06 0.42145 51.06 50.857 51.278 0 53 20 4 0 0 0 0.56348 1 28160 28160 13.042 1.5478 1 19545000 + 49181 20365 33209 33968 57316 57316 -0.09601564837362275 QEEEPTYKYTF 11 Unmodified _QEEEPTYKYTF_ 0 0 0 REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF REV__ENST00000440623.5_1_2:182756982-182781157:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 717.8248901367188 2 717.824815 1433.63508 0.62195 0.00044645 1.362 0.00097769 1.984 0.0014241 717.8250215910485 77.732 0.55257 71.557 71.221 71.773 -6.1757 40 31 2 0 0 0 0.073778 1 50830 50830 45.74 29.591 1 10888000 + 49182 20333 33210 33969 57317 57317 -0.06439583809674332 QEEEQRHE 8 Unmodified _QEEEQRHE_ 0 0 0 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7368774414062 2 542.736334 1083.45811 0.12756 6.9232E-05 1.2537 0.00068041 1.3812 0.00074964 542.7369600100112 100.18 0.10632 100.02 99.953 100.06 -0.1575 6 3 2 0 0 0 0.80383 1 54701 54701 4.3292 0.38484 1 1029300 + 49183 20586 33211 33970 57318 57318 -0.08027574849279517 QEEEQRHE 8 Unmodified _QEEEQRHE_ 0 0 0 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.736334 1083.45811 0.12756 6.9232E-05 1.2537 0.00068041 1.3812 0.00074964 542.7369600100112 100.18 0.10632 100.02 99.953 100.06 -0.1575 -0.01864 0.00017543 NaN 4.3292 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1029300 + 49184 20586 33211 33970 -0.08027574849279517 QEEEQRHE 8 Unmodified _QEEEQRHE_ 0 0 0 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 REV__nc|ENSG00000142661|Q5VTT5-2|MYOM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.736334 1083.45811 2.1218 0.0011516 -0.93282 -0.00050628 1.189 0.00064531 542.7360142319161 100.1 0.11142 100.06 99.989 100.1 -0.036301 0.01864 -0.0021979 NaN 4.3292 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1862400 + 49185 20586 33211 33970 -0.08027574849279517 QEEVFTPPGD 10 Unmodified _QEEVFTPPGD_ 0 0 0 ENSG00000174792|ENST00000311623|ODAPH ENSG00000174792|ENST00000311623|ODAPH ENSG00000174792|ENST00000311623|ODAPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.755615234375 2 559.753661 1117.49277 0.050808 2.844E-05 1.4612 0.00081794 1.5121 0.00084638 559.7554989756693 71.429 0.21056 71.429 71.363 71.574 0 12 9 2 0 0 0 0.69917 1 39809 39809 2.9952 0.10602 1 695840 49186 8457 33212 33971 57319 57319 -0.06127751761164291 QEEVQLLL 8 Unmodified _QEEVQLLL_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2734680175781 2 486.274032 970.533512 0.24969 0.00012142 0.15074 7.3303E-05 0.40044 0.00019472 486.2738139195893 90.808 0.33181 90.808 90.595 90.927 0 23 13 2 0 0 0 0.80232 1 50181 50181 5.2307 0 1 617860 + 49187 17659 33213 33972 57320 57320 0.047066343491110274 QEFLEQKI 8 Unmodified _QEFLEQKI_ 0 0 0 ENST00000552620.1_1_14:24679968-24681048:-|nuORF;ENST00000527154.5_1_14:24680556-24682678:-|nuORF;ENSG00000254505|ENST00000347519|CHMP4A;nc|ENSG00000254505|Q9BY43-2|CHMP4A ENST00000552620.1_1_14:24679968-24681048:-|nuORF ENST00000552620.1_1_14:24679968-24681048:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1035.556762695312 1 1034.55169 1033.54441 0.43227 0.0004472 1.5132 0.0015654 1.9454 0.0020126 1035.5531412553896 44.199 0.15445 44.177 44.126 44.281 -0.022064 11 9 2 0 0 0 0.79783 1 23734 23734 7.9102 0 1 18480000 49188 10775 33214 33973 57321 57321 0.028980367233771176 QEFLMLFL 8 Unmodified _QEFLMLFL_ 0 0 0 REV__ENST00000370580.5_1_1:85732129-85732177:-|nuORF REV__ENST00000370580.5_1_1:85732129-85732177:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1041.045654296875 1 1040.54852 1039.54124 0.85141 0.00088593 -0.73267 -0.00076238 0.11874 0.00012355 1041.5500630467845 50.839 0.094685 45.19 45.154 45.248 -5.649 6 5 2 0 0 0 8.7369 1 31948 31948 21.747 3.6117 1 14528000 + 49189 26060 33215 33974 57322 57322 0.023050703450053334 QEFSHWLHL 9 Unmodified _QEFSHWLHL_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2;ENST00000580882.5_1_17:26966325-26972074:-|nuORF ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2504577636719 3 399.533091 1195.57744 -0.22328 -8.9206E-05 0.04741 1.8942E-05 -0.17587 -7.0265E-05 399.53322911484855 33.405 0.2231 33.246 33.171 33.394 -0.15918 14 8 3 0 0 0 0.21798 1 17454 17454 1.1933 0.41681 1 684670 49190 359 33216 33975 57323 57323 -0.012523364339131149 QEFYQDTF 8 Unmodified _QEFYQDTF_ 0 0 0 nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP nc|ENSG00000271793|O60506-2|SYNCRIP nc|ENSG00000271793|O60506-2|SYNCRIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2298583984375 2 539.229822 1076.44509 NaN NaN NaN NaN NaN NaN NaN 77.034 1 77.034 76.534 77.534 0 0 0 0 0.97348 1 42826 42826 5.7604 0 1 49191 4687 33217 33976 57324 57324 -0.09007405961392578 QEGDKDTLHLF 11 Unmodified _QEGDKDTLHLF_ 0 0 0 REV__nc|ENSG00000170242|Q96K76-2|USP47 REV__nc|ENSG00000170242|Q96K76-2|USP47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.882568359375 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 75.717 1 75.717 75.217 76.217 0 0 0 0 0.9428 1 42112 42112 0.50596 0 1 + 49192 22458 33218 33977 57325 57325 -0.013567270243811436 QEGSESVK 8 Unmodified _QEGSESVK_ 0 0 0 ENST00000296181.8_1_3:124482040-124482349:-|nuORF ENST00000296181.8_1_3:124482040-124482349:-|nuORF ENST00000296181.8_1_3:124482040-124482349:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.2089538574219 2 432.208889 862.403226 NaN NaN NaN NaN NaN NaN NaN 109.58 1 103.41 102.91 103.91 -6.1757 0 0 0 0.97444 1 73179 73179 4.3292 0 1 49193 11506 33219 33978 57326 57326 -0.03347961649899389 QEGSYPYFI 9 Unmodified _QEGSYPYFI_ 0 0 0 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2609252929688 2 552.25584 1102.49713 0.81679 0.00045108 1.0907 0.00060234 1.9075 0.0010534 552.2564789506547 73.295 1.1792 73.295 72.883 74.062 0 219 55 6 0 0 0 0.51218 1 40626 40626 6.7232 0.96273 1 271680000 49194 2923 33220 33979 57327 57327 -0.05002242547629976 QEHEDRKHD 9 Unmodified _QEHEDRKHD_ 0 0 0 ENSG00000183783|ENST00000360029|KCTD8 ENSG00000183783|ENST00000360029|KCTD8 ENSG00000183783|ENST00000360029|KCTD8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8507385253906 3 398.514647 1192.52211 0.40814 0.00016265 2.3046 0.00091842 2.7128 0.0010811 398.51569386192335 57.252 0.14535 57.252 57.201 57.346 0 9 6 2 0 0 0 0.21834 1 31901 31901 0.96228 0.69326 1 892490 49195 9197 33221 33980 57328 57328 -0.06644794692351752 QEIATYRSL 9 Unmodified _QEIATYRSL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__P19001 ENSG00000171345|ENST00000361566|KRT19;CON__P19001 ENSG00000171345|ENST00000361566|KRT19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.78662109375 2 540.787838 1079.56112 NaN NaN NaN NaN NaN NaN NaN 76.444 1 75.965 75.465 76.465 -0.47945 0 0 0 0.7243 1 41845 41845 8.5933 0 1 + 49196 167;173 33222 33981 57329 57329 0.024525376093379236 QEIPFRLREIM 11 Unmodified _QEIPFRLREIM_ 0 0 0 ENSG00000185298|ENST00000329214|CCDC137 ENSG00000185298|ENST00000329214|CCDC137 ENSG00000185298|ENST00000329214|CCDC137 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.268310546875 3 477.930745 1430.7704 1.1716 0.00055992 0.37717 0.00018026 1.5487 0.00074019 478.26644457490875 50.183 0.70501 44.644 44.266 44.971 -5.5391 116 45 4 0 0 0 0.65846 1 31252 31252 4.1166 2.6615 1 137070000 49197 9358 33223 33982 57330 57330 0.07225037570924542 QEITVQQL 8 Unmodified _QEITVQQL_ 0 0 0 nc|ENSG00000137500|Q9GZT6-3|CCDC90B;nc|ENSG00000137500|Q9GZT6-2|CCDC90B;ENSG00000137500|ENST00000529689|CCDC90B;ENST00000526631.1_1_11:82985654-82997015:-|nuORF nc|ENSG00000137500|Q9GZT6-3|CCDC90B nc|ENSG00000137500|Q9GZT6-3|CCDC90B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7643127441406 2 479.763832 957.513111 0.26716 0.00012817 1.0051 0.00048222 1.2723 0.00061039 479.76428117157457 63.697 0.38691 63.697 63.543 63.93 0 40 15 4 0 0 0 0.46494 1 35592 35592 38.151 0 1 6014700 49198 4941 33224 33983 57331 57331 0.032654636892857525 QEKARLPK 8 Unmodified _QEKARLPK_ 0 0 0 ENSG00000072786|ENST00000176763|STK10 ENSG00000072786|ENST00000176763|STK10 ENSG00000072786|ENST00000176763|STK10 MSMS AL20221201_MKP_PDAC_01 4 485.7749328613281 2 485.295633 968.576714 NaN NaN NaN NaN NaN NaN NaN 93.5 1 87.324 86.824 87.824 -6.1757 0 0 0 0.9559 1 61888 61888 9.3831 0.63772 1 49199 1092 33225 33984 57332 57332 0.09116868917033116 QEKEQLTQELQ 11 Unmodified _QEKEQLTQELQ_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1;ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.8526611328125 2 687.348988 1372.68342 0.183 0.00012579 2.0806 0.0014301 2.2636 0.0015559 687.3500506795148 47.309 0.2153 47.309 47.212 47.427 0 19 9 3 0 0 0 0.53952 1 25906 25906 14.405 0 1 1870700 49200 980 33226 33985 57333 57333 0.011989098302365164 QEKEQLTQELQ 11 Unmodified _QEKEQLTQELQ_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1;ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 687.348988 1372.68342 0.66788 0.00045906 4.7007 0.003231 5.3685 0.0036901 687.8544689828138 47.71 0.081314 47.671 47.64 47.722 -0.038643 0.18078 0.0027095 NaN 14.405 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1553300 49201 980 33226 33985 0.011989098302365164 QEKKQQTY 8 Unmodified _QEKKQQTY_ 0 0 0 REV__ENSG00000164221|ENST00000379611|CCDC112 REV__ENSG00000164221|ENST00000379611|CCDC112 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.8092041015625 2 526.772188 1051.52982 0.8079 0.00042558 0.016345 8.61E-06 0.82425 0.00043419 526.7724111811901 28.768 0.23796 25.62 25.439 25.677 -3.1482 18 11 2 0 0 0 8.7369 1 16037 16037 26.884 8.7373 1 14031000 + 49202 21893 33227 33986 57334 57334 0.006119645752505676 QEKLIVLL 8 Unmodified _QEKLIVLL_ 0 0 0 REV__nc|ENSG00000074410|O43570-2|CA12 REV__nc|ENSG00000074410|O43570-2|CA12 MSMS AL20221201_MKP_PDAC_01 4 478.3128967285156 2 478.312961 954.611368 NaN NaN NaN NaN NaN NaN NaN 108.45 1 102.27 101.77 102.77 -6.1757 0 0 0 0.97444 1 72483 72483 0.79363 0 1 + 49203 17552 33228 33987 57335 57335 0.13224692005132965 QEKSEYWFF 9 Unmodified _QEKSEYWFF_ 0 0 0 ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK ENSG00000155530|ENST00000285928|LRGUK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.286376953125 2 632.287671 1262.56079 NaN NaN NaN NaN NaN NaN NaN 13.81 1 13.817 13.317 14.317 0.0073986 0 0 0 0.85737 1 6821 6821 0.6015 0 1 49204 6393 33229 33988 57336 57336 -0.05998882110543491 QEKYTSEKP 9 Unmodified _QEKYTSEKP_ 0 0 0 nc|ENSG00000173421|Q8IYA8-2|IHO1;ENSG00000173421|ENST00000452691|IHO1 nc|ENSG00000173421|Q8IYA8-2|IHO1 nc|ENSG00000173421|Q8IYA8-2|IHO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2772216796875 2 555.277303 1108.54005 0.67436 0.00037445 -0.0097278 -5.4016E-06 0.66463 0.00036905 555.2773784953698 48.306 0.33079 47.934 47.771 48.102 -0.37172 52 16 5 0 0 0 0.1685 1 25869 25869 26.268 1.2772 1 34611000 49205 8323 33230 33989 57337 57337 -0.009874724901919762 QELALLDKDP 10 Unmodified _QELALLDKDP_ 0 0 0 REV__ENSG00000090857|ENST00000288050|PDPR REV__ENSG00000090857|ENST00000288050|PDPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3106079101562 2 571.308603 1140.60265 NaN NaN NaN NaN NaN NaN NaN 50.993 1 50.993 50.493 51.493 0 0 0 0 0.61997 1 28138 28138 20.415 0 1 + 49206 17870 33231 33990 57338 57338 0.037976735780148374 QELALLDKDP 10 Unmodified _QELALLDKDP_ 0 0 0 REV__ENSG00000090857|ENST00000288050|PDPR REV__ENSG00000090857|ENST00000288050|PDPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3102416992188 2 571.308603 1140.60265 1.537 0.00087811 1.9502 0.0011142 3.4872 0.0019923 571.3091654915748 58.644 0.20838 52.569 52.457 52.665 -6.0745 12 11 2 0 0 0 0.44171 1 37624 37624 19.362 2.249 1 6783800 + 49207 17870 33231 33990 57339 57339 0.037976735780148374 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8796081542969 3 406.878592 1217.61395 NaN NaN NaN NaN NaN NaN NaN 11.985 1 11.985 11.485 12.485 0 0 0 0 0.94307 1 5679 5679 0.08335 0 1 + 49208 18740 33232 33991 57340 57340 0.01384450881482735 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8791809082031 3 406.878592 1217.61395 NaN NaN NaN NaN NaN NaN NaN 12.488 1 12.488 11.988 12.988 0 0 0 0 0.94307 1 5912 5912 0.08335 0 1 + 49209 18740 33232 33991 57341 57341 0.01384450881482735 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8785095214844 3 406.878592 1217.61395 -0.5384 -0.00021907 2.3689 0.00096387 1.8305 0.0007448 406.8797612252853 9.2751 0.023382 9.1836 9.1622 9.1856 -0.09156 9 8 2 0 0 0 0.74203 1 4539 4539 0.08335 0 1 204140 + 49210 18740 33232 33991 57342 57342 0.01384450881482735 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8791198730469 3 406.878592 1217.61395 -0.18317 -7.4528E-05 2.0968 0.00085313 1.9136 0.0007786 406.87923260596955 7.0424 0.022781 7.0513 7.0313 7.0541 0.0089307 11 8 2 0 0 0 0.74203 1 3514 3514 0.08335 0 1 355740 + 49211 18740 33232 33991 57343 57343 0.01384450881482735 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8797607421875 3 406.878592 1217.61395 NaN NaN NaN NaN NaN NaN NaN 7.4774 1 7.4927 6.9927 7.9927 0.015238 0 0 0 0.94307 1 3730 3730 0.08335 0 1 + 49212 18740 33232 33991 57344 57344 0.01384450881482735 QELISKIADDS 11 Unmodified _QELISKIADDS_ 0 0 0 REV__ENSG00000111249|ENST00000261726|CUX2 REV__ENSG00000111249|ENST00000261726|CUX2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 406.878592 1217.61395 -0.5384 -0.00021907 2.3689 0.00096387 1.8305 0.0007448 406.8797612252853 9.2751 0.023382 9.1836 9.1622 9.1856 -0.09156 0 0 NaN 0.08335 9 8 2 NaN NaN NaN NaN 0 NaN NaN 0 204140 + 49213 18740 33232 33991 0.01384450881482735 QELISKKKA 9 Unmodified _QELISKKKA_ 0 0 0 REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF REV__ENST00000566329.1_1_16:72134993-72137705:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2838745117188 2 522.824224 1043.63389 0.74917 0.00039168 2.4277 0.0012693 3.1769 0.001661 522.8262057927247 93.652 0.2211 87.477 87.334 87.555 -6.1757 16 12 2 0 0 0 0.20727 1 62042 62042 7.9102 0 1 6124300 + 49214 20495 33233 33992 57345 57345 0.11382291402765077 QELKLITVQ 9 Unmodified _QELKLITVQ_ 0 0 0 REV__ENSG00000139668|ENST00000298125|WDFY2 REV__ENSG00000139668|ENST00000298125|WDFY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.32373046875 2 536.324057 1070.63356 -0.27559 -0.00014781 0.054241 2.9091E-05 -0.22135 -0.00011872 536.3240661271059 51.498 0.26273 51.084 50.949 51.212 -0.41351 33 13 3 0 0 0 0.008513 1 27738 27738 99.755 3.6444 1 21075000 + 49215 20426 33234 33993 57346 57346 0.10106871682887686 QELKLITVQ 9 Unmodified _QELKLITVQ_ 0 0 0 REV__ENSG00000139668|ENST00000298125|WDFY2 REV__ENSG00000139668|ENST00000298125|WDFY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3236083984375 2 536.324057 1070.63356 0.083548 4.4809E-05 -1.1715 -0.00062831 -1.088 -0.0005835 536.323801071672 51.111 0.22428 51.057 50.942 51.166 -0.053871 18 10 2 0 0 0 0.040683 1 27663 27663 49.554 1.8056 1 2071500 + 49216 20426 33234 33993 57347 57347 0.10106871682887686 QELKLITVQ 9 Unmodified _QELKLITVQ_ 0 0 0 REV__ENSG00000139668|ENST00000298125|WDFY2 REV__ENSG00000139668|ENST00000298125|WDFY2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.324057 1070.63356 0.73202 0.0003926 -1.7107 -0.0009175 -0.9787 -0.0005249 536.3234000097095 51.058 0.19033 51.058 50.919 51.109 0 -0.0080821 -0.0015333 NaN 99.755 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4910100 + 49217 20426 33234 33993 0.10106871682887686 QELKLITVQ 9 Unmodified _QELKLITVQ_ 0 0 0 REV__ENSG00000139668|ENST00000298125|WDFY2 REV__ENSG00000139668|ENST00000298125|WDFY2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.324057 1070.63356 0.083548 4.4809E-05 -1.1715 -0.00062831 -1.088 -0.0005835 536.323801071672 51.111 0.22428 51.057 50.942 51.166 -0.053871 -0.0096619 -0.00095496 NaN 99.755 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2071500 + 49218 20426 33234 33993 0.10106871682887686 QELLALHSL 9 Unmodified _QELLALHSL_ 0 0 0 ABCA7|p.R198H|1|0.15|ENSG00000064687|chr19:1043054-1043054|G/A|missense_variant ABCA7|p.R198H|1|0.15|ENSG00000064687|chr19:1043054-1043054|G/A|missense_variant ABCA7|p.R198H|1|0.15|ENSG00000064687|chr19:1043054-1043054|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 512.2949829101562 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 92.109 1 85.933 85.433 86.433 -6.1757 0 0 0 0.26667 1 60903 60903 26.884 6.43 1 49219 1 33235 33994 57348 57348 0.06566029477335178 QELLGLEAL 9 Unmodified _QELLGLEAL_ 0 0 0 REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF REV__ENST00000598734.1_1_19:39421606-39422228:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.281982421875 2 493.281857 984.549162 0.15613 7.7015E-05 0.29288 0.00014447 0.44901 0.00022149 493.2819287018421 89.327 0.49765 89.327 89.076 89.574 0 78 25 4 0 0 0 0.013323 1 49434 49434 71.134 13.662 1 16803000 + 49220 29233 33236 33995 57349 57349 0.056269208661547054 QELLGSVNSL 10 Unmodified _QELLGSVNSL_ 0 0 0 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 ENSG00000120725|ENST00000394817|SIL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.291748046875 2 530.287671 1058.56079 0.58192 0.00030858 2.2034 0.0011684 2.7853 0.001477 530.7899487033336 74.621 0.7196 74.621 74.15 74.869 0 61 32 3 0 0 0 0.48505 1 41425 41425 17.113 1.2657 1 2377300 49221 3536 33237 33996 57350 57350 0.03385117889479261 QELLHQYNG 9 Unmodified _QELLHQYNG_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3008422851562 2 551.269813 1100.52507 0.79444 0.00043795 -1.5196 -0.00083773 -0.72519 -0.00039978 551.2682961704094 74.754 0.34412 74.278 74.11 74.454 -0.47588 28 13 3 0 0 0 0.18811 1 40832 40832 17.113 2.2746 1 1573000 + 49222 19763 33238 33997 57351 57351 -0.021169195675156516 QELLHYYA 8 Unmodified _QELLHYYA_ 0 0 0 REV__ENSG00000136167|ENST00000323076|LCP1 REV__ENSG00000136167|ENST00000323076|LCP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2673950195312 2 518.758549 1035.50255 -0.41016 -0.00021277 0.98212 0.00050948 0.57196 0.00029671 518.7590687149819 35.018 0.20399 34.796 34.691 34.895 -0.2224 18 8 3 0 0 0 8.7369 1 18377 18377 4.3292 0.38484 1 2342700 + 49223 20143 33239 33998 57352 57352 -0.013785189651571272 QELLISPDP 9 Unmodified _QELLISPDP_ 0 0 0 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 ENSG00000080573|ENST00000264828|COL5A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2728271484375 2 506.27149 1010.52843 0.38042 0.0001926 0.82841 0.0004194 1.2088 0.000612 506.2722143948634 62.463 0.21972 62.463 62.391 62.611 0 18 13 2 0 0 0 0.07916 1 34837 34837 37.974 0 1 3680500 49224 1300 33240 33999 57353 57353 0.02358330486470095 QELLLRGSL 9 Unmodified _QELLLRGSL_ 0 0 0 REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF REV__ENST00000371711.4_1_20:48251667-48252051:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.8037719726562 2 514.808574 1027.60259 0.019426 1.0001E-05 -0.55893 -0.00028774 -0.5395 -0.00027774 514.8078457640178 65.632 0.35976 65.148 65 65.36 -0.48428 34 15 3 0 0 0 0.32235 1 35923 35923 16.149 1.3108 1 2378100 + 49225 26088 33241 34000 57354 57354 0.0898971836866167 QELRDERSF 9 Unmodified _QELRDERSF_ 0 0 0 REV__ENSG00000184584|ENST00000330794|STING1 REV__ENSG00000184584|ENST00000330794|STING1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.29345703125 2 590.291276 1178.568 NaN NaN NaN NaN NaN NaN NaN 86.257 1 85.754 85.254 86.254 -0.50318 0 0 0 0.84737 1 47198 47198 1.8442 0.19162 1 + 49226 23428 33242 34001 57355 57355 -0.014141495101057444 QELRFIQYWQE 11 Unmodified _QELRFIQYWQE_ 0 0 0 ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000186399|ENST00000327271|GOLGA8R;ENSG00000232653|ENST00000448387|GOLGA8N;ENSG00000206127|ENST00000509311|GOLGA8O;ENSG00000188626|ENST00000563027|GOLGA8M;ENSG00000178115|ENST00000562783|GOLGA8Q ENSG00000261739|ENST00000562295|GOLGA8S ENSG00000261739|ENST00000562295|GOLGA8S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 770.3812255859375 2 770.383165 1538.75178 0.92361 0.00071154 -2.3957 -0.0018456 -1.4721 -0.0011341 770.3815159300328 58.134 0.2403 58.074 57.935 58.175 -0.060719 23 11 3 0 0 0 0.63534 1 31657 31657 9.544 2.4423 1 5774600 49227 10844 33243 34002 57356 57356 0.003951992007387162 QELSKSFL 8 Unmodified _QELSKSFL_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;nc|ENSG00000197136|Q9H6A9-2|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.224853515625 2 476.260925 950.507297 -0.20205 -9.6231E-05 1.4042 0.00066874 1.2021 0.00057251 476.26067894423693 48.88 0.21709 48.88 48.715 48.932 0 20 9 3 0 0 0 8.7369 1 26860 26860 7.9102 0 1 3058400 49228 9912 33244 34003 57357 57357 0.030063651776117695 QELSLKEQL 9 Unmodified _QELSLKEQL_ 0 0 0 REV__ENSG00000066739|ENST00000359933|ATG2B REV__ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3031005859375 2 544.303321 1086.59209 0.23486 0.00012783 -0.33209 -0.00018076 -0.097237 -5.2926E-05 544.3027367052525 46.822 0.17984 46.822 46.678 46.858 0 13 8 2 0 0 0 0.020973 1 25605 25605 62.573 2.4988 1 2591500 + 49229 17407 33245 34004 57358 57358 0.05225690923566617 QELTQEQRDQL 11 Unmodified _QELTQEQRDQL_ 0 0 0 ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENSG00000127980|ENST00000248633|PEX1;nc|ENSG00000127980|O43933-2|PEX1 ENST00000484913.5_1_7:92116773-92148321:-|nuORF ENST00000484913.5_1_7:92116773-92148321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.3445434570312 2 694.344237 1386.67392 0.7324 0.00050854 -0.26027 -0.00018072 0.47213 0.00032782 694.3438485614123 96.234 0.71762 90.058 89.535 90.253 -6.1757 105 43 3 0 0 0 0.37825 1 63820 63820 22.658 3.2961 1 29683000 49230 4039 33246 34005 57359 57359 -0.00394858455274516 QEMLFHRAK 9 Unmodified _QEMLFHRAK_ 0 0 0 ENST00000550735.6_1_12:112337947-112339324:+|nuORF ENST00000550735.6_1_12:112337947-112339324:+|nuORF ENST00000550735.6_1_12:112337947-112339324:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2068786621094 3 387.206209 1158.5968 1.3041 0.00050495 -0.095553 -3.6999E-05 1.2085 0.00046795 387.20630735256617 42.013 0.43156 37.328 37.143 37.575 -4.6846 67 27 3 0 0 0 0.41742 1 25289 25289 7.609 0 1 24162000 49231 15168 33247 34006 57360 57360 0.02384296585341872 QENESERQQQ 10 Unmodified _QENESERQQQ_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MSMS AL20221201_MKP_PDAC_01 4 638.2802124023438 2 638.281637 1274.54872 NaN NaN NaN NaN NaN NaN NaN 43.944 1 39.179 38.679 39.679 -4.7648 0 0 0 0.71157 1 26758 26758 16.149 0 1 49232 4409 33248 34007 57361 57361 -0.07757150591646678 QEPARAPAL 9 Unmodified _QEPARAPAL_ 0 0 0 REV__ENSG00000167680|ENST00000586582|SEMA6B REV__ENSG00000167680|ENST00000586582|SEMA6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7653503417969 2 476.764166 951.513779 -0.40654 -0.00019382 1.7172 0.0008187 1.3107 0.00062488 476.76499898228695 26.85 0.21125 26.85 26.761 26.972 0 15 9 2 0 0 0 0.54444 1 13827 13827 4.756 0.81161 1 797050 + 49233 22241 33249 34008 57362 57362 0.036083031289877 QEPATWCQRL 10 Unmodified _QEPATWCQRL_ 0 0 0 ENST00000296933.10_1_5:171433486-171433849:-|nuORF ENST00000296933.10_1_5:171433486-171433849:-|nuORF ENST00000296933.10_1_5:171433486-171433849:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2999267578125 2 616.298047 1230.58154 0.38972 0.00024018 0.94978 0.00058535 1.3395 0.00082553 616.2987441204222 77.409 0.77074 77.409 77.045 77.816 0 195 49 5 0 0 0 0.56348 1 42884 42884 13.042 1.5478 1 138110000 49234 11518 33250 34009 57363 57363 -0.024526150024939852 QEPCRFLQ 8 Unmodified _QEPCRFLQ_ 0 0 0 REV__ENST00000495579.5_1_6:32088425-32095984:-|nuORF REV__ENST00000495579.5_1_6:32088425-32095984:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7507629394531 2 510.750201 1019.48585 0.15934 8.1384E-05 0.63895 0.00032634 0.79829 0.00040773 510.7504562038252 57.911 0.71754 51.884 51.666 52.383 -6.0275 76 39 3 0 0 0 0.48669 1 37112 37112 36.044 3.7387 1 65704000 + 49235 24292 33251 34010 57364 57364 -0.023113431227557157 QEPNTYEKL 9 Unmodified _QEPNTYEKL_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.277587890625 2 561.277303 1120.54005 0.76293 0.00042821 -0.5238 -0.000294 0.23912 0.00013421 561.2768690905432 72.157 0.28846 71.681 71.525 71.813 -0.47609 31 12 3 0 0 0 0.41742 1 39448 39448 11.64 0.81637 1 6766500 + 49236 21196 33252 34011 57365 57365 -0.015394724901852896 QEPNTYEKL 9 Unmodified _QEPNTYEKL_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 561.277303 1120.54005 0.76293 0.00042821 -0.5238 -0.000294 0.23912 0.00013421 561.2768690905432 72.157 0.28846 71.681 71.525 71.813 -0.47609 0 0 NaN 11.64 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6766500 + 49237 21196 33252 34011 -0.015394724901852896 QEPRGPCF 8 Unmodified _QEPRGPCF_ 0 0 0 nc|ENSG00000138835|P49796-1|RGS3;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;ENST00000488620.5_1_9:116327559-116353744:+|nuORF nc|ENSG00000138835|P49796-1|RGS3;ENST00000488620.5_1_9:116327559-116353744:+|nuORF ENST00000488620.5_1_9:116327559-116353744:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2163391113281 2 467.215995 932.417436 0.1553 7.2557E-05 0.28347 0.00013244 0.43877 0.000205 467.21596994929706 56.309 0.35655 56.309 56.138 56.495 0 31 16 3 0 0 0 0.80624 1 31416 31416 2.8892 0 1 5045700 49238 5116;14224 33253 34012 57366 57366 -0.05147587702595047 QEPSTDYHF 9 Unmodified _QEPSTDYHF_ 0 0 0 ENSG00000132300|ENST00000254630|PTCD3;ENST00000484203.5_1_2:86348636-86354493:+|nuORF;ENST00000480102.1_1_2:86348636-86354336:+|nuORF ENSG00000132300|ENST00000254630|PTCD3 ENSG00000132300|ENST00000254630|PTCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2369384765625 2 562.238178 1122.4618 0.80745 0.00045398 -3.1534 -0.001773 -2.3459 -0.001319 562.2354664797443 82.314 0.26735 81.818 81.698 81.966 -0.4952 21 10 3 0 0 0 0.58466 1 45065 45065 2.3027 0.24298 1 831500 49239 4386 33254 34013 57367 57367 -0.09452905075431772 QEQDRIEF 8 Unmodified _QEQDRIEF_ 0 0 0 DDX39B-ETV7|3|fusion;DDX39B-ETV7|1|fusion;nc|ENSG00000010030|Q9Y603-7|ETV7;ENSG00000010030|ENST00000340181|ETV7;DDX39B-ETV7|4|fusion;nc|ENSG00000010030|Q9Y603-8|ETV7;nc|ENSG00000010030|Q9Y603-3|ETV7;nc|ENSG00000010030|Q9Y603-2|ETV7;nc|ENSG00000010030|Q9Y603-4|ETV7 DDX39B-ETV7|3|fusion DDX39B-ETV7|3|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7545776367188 2 532.753995 1063.49344 0.57897 0.00030845 1.0842 0.00057761 1.6632 0.00088606 532.7543257312806 43.826 0.4509 39.061 38.808 39.259 -4.7648 75 28 4 0 0 0 0.31612 1 26610 26610 53.576 9.1686 1 50798000 49240 230 33255 34014 57368 57368 -0.03576912321477721 QEQHSGQRG 9 Unmodified _QEQHSGQRG_ 0 0 0 REV__ENSG00000143631|ENST00000368799|FLG REV__ENSG00000143631|ENST00000368799|FLG MSMS AL20221201_MKP_PDAC_01 4 513.7420654296875 2 513.739211 1025.46387 NaN NaN NaN NaN NaN NaN NaN 19.746 1 17.089 16.589 17.589 -2.6564 0 0 0 0.18351 1 10484 10484 32.786 0.66872 1 + + 49241 16850 33256 34015 57369 57369 -0.04784431546954693 QEQLEAMVP 9 Unmodified _QEQLEAMVP_ 0 0 0 ENST00000469442.5_1_2:85978949-86014010:+|nuORF ENST00000469442.5_1_2:85978949-86014010:+|nuORF ENST00000469442.5_1_2:85978949-86014010:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2840576171875 2 522.755149 1043.49575 1.3108 0.00068524 1.7404 0.00090983 3.0513 0.0015951 523.2561249520858 94.286 0.58588 88.11 87.806 88.392 -6.1757 46 33 2 0 0 0 0.18882 1 62315 62315 10.824 0 1 3535600 49242 13836 33257 34016 57370 57370 -0.02426199908018134 QEQLRPQTPE 10 Unmodified _QEQLRPQTPE_ 0 0 0 nc|ENSG00000130363|Q86UC2|RSPH3;ENSG00000130363|ENST00000367069|RSPH3 nc|ENSG00000130363|Q86UC2|RSPH3 nc|ENSG00000130363|Q86UC2|RSPH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2628173828125 2 613.312209 1224.60986 0.75167 0.00046101 -0.14853 -9.1093E-05 0.60314 0.00036991 613.3122001073613 42.488 0.10391 42.488 42.42 42.524 0 6 4 2 0 0 0 0.22154 1 22995 22995 21.537 4.4241 1 1303000 49243 16186 33258 34017 57371 57371 0.0065440617845524685 QEQTTTEQSF 10 Unmodified _QEQTTTEQSF_ 0 0 0 REV__ENST00000317019.2_1_11:130542873-130584089:+|nuORF REV__ENST00000317019.2_1_11:130542873-130584089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7645874023438 2 599.764757 1197.51496 0.71529 0.00042901 0.81936 0.00049142 1.5347 0.00092043 599.7653139092251 73.282 0.8073 72.806 72.189 72.996 -0.47588 78 36 4 0 0 0 0.65282 1 40158 40158 8.1555 1.0538 1 11526000 + 49244 25475 33259 34018 57372 57372 -0.0758957208342963 QEQYPPLKF 9 Unmodified _QEQYPPLKF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8373413085938 2 575.300581 1148.58661 0.33271 0.00019141 3.0127 0.0017332 3.3454 0.0019246 575.3028816977035 68.935 0.22737 68.454 68.399 68.627 -0.48071 12 9 2 0 0 0 0.20727 1 37659 37659 7.9102 0 1 808690 49245 2325 33260 34019 57373 57373 0.018260121317553057 QERDLFQNL 9 Unmodified _QERDLFQNL_ 0 0 0 REV__ENSG00000250374|ENST00000503032|TRIM75 REV__ENSG00000250374|ENST00000503032|TRIM75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7940673828125 2 581.796195 1161.57784 0.41731 0.00024279 -2.1366 -0.0012431 -1.7193 -0.0010003 581.7941401878326 89.946 0.30939 89.445 89.277 89.586 -0.50171 40 16 3 0 0 0 0.43463 1 49120 49120 10.824 1.4765 1 1261900 + 49246 24500 33261 34020 57374 57374 0.0035103849527331477 QERDLHEQL 9 Unmodified _QERDLHEQL_ 0 0 0 ENSG00000088320|ENST00000201979|REM1 ENSG00000088320|ENST00000201979|REM1 ENSG00000088320|ENST00000201979|REM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.29541015625 2 584.291276 1166.568 0.34412 0.00020107 2.4599 0.0014373 2.8041 0.0016384 584.2934254794052 40.337 1.2102 40.04 39.492 40.702 -0.29716 116 58 4 0 0 0 0.11784 4 21407 21095;21211;21407;21510 31.268 12.011 1 12592000 49247 1484 33262 34021 57375;57376;57377;57378 57377 -0.00862149510112431 QERFRAVQ 8 Unmodified _QERFRAVQ_ 0 0 0 REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1033.72021484375 1 1033.55375 1032.54648 0.71237 0.00073627 1.1957 0.0012358 1.908 0.001972 1033.556882982262 52.569 0.3694 46.835 46.691 47.06 -5.7345 28 20 2 0 0 0 0.67481 1 33310 33310 19.439 0 1 22597000 + 49248 22353 33263 34022 57379 57379 0.03150510251839478 QERFRAVQ 8 Unmodified _QERFRAVQ_ 0 0 0 REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1033.724609375 1 1033.55375 1032.54648 0.71237 0.00073627 1.1957 0.0012358 1.908 0.001972 1033.556882982262 52.569 0.3694 46.835 46.691 47.06 -5.7345 28 20 2 0 0 0 8.7369 1 33129 33129 19.439 0 1 22597000 + 49249 22353 33263 34022 57380 57380 0.03150510251839478 QERLHVQAAA 10 Unmodified _QERLHVQAAA_ 0 0 0 REV__ENST00000519288.5_1_8:28480280-28571023:+|nuORF REV__ENST00000519288.5_1_8:28480280-28571023:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3014526367188 2 561.804354 1121.59415 0.45822 0.00025743 -3.3504 -0.0018823 -2.8922 -0.0016248 561.8027067651907 38.16 0.17872 38.16 38.069 38.248 0 14 9 2 0 0 0 0.21618 1 20356 20356 26.268 3.5319 1 12628000 + 49250 28260 33264 34023 57381 57381 0.03822164452049037 QERMHHDI 8 Unmodified _QERMHHDI_ 0 0 0 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 ENSG00000148400|ENST00000651671|NOTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2485961914062 2 533.248357 1064.48216 0.31074 0.0001657 0.059884 3.1933E-05 0.37062 0.00019763 533.2483841388198 95.568 0.40266 95.568 95.338 95.741 0 55 25 3 0 0 0 0.80232 1 52865 52865 5.2307 0 1 998160 49251 5930 33265 34024 57382 57382 -0.04750012896602129 QERPHTGKKRY 11 Unmodified _QERPHTGKKRY_ 0 0 0 nc|ENSG00000198342|Q9H7R0-2|ZNF442;ENSG00000198342|ENST00000242804|ZNF442 nc|ENSG00000198342|Q9H7R0-2|ZNF442 nc|ENSG00000198342|Q9H7R0-2|ZNF442 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2568359375 3 467.25662 1398.74803 0.11828 5.5266E-05 0.99596 0.00046537 1.1142 0.00052064 467.2570855700396 21.916 0.25799 21.93 21.805 22.063 0.013796 31 11 4 0 0 0 0.67477 1 11213 11213 6.6235 0.43161 1 5101500 49252 10077 33266 34025 57383 57383 0.06460574217567228 QERQQYAWL 9 Unmodified _QERQQYAWL_ 0 0 0 nc|ENSG00000010165|Q8N6R0-4|METTL13;ENSG00000010165|ENST00000361735|METTL13;nc|ENSG00000010165|Q8N6R0-2|METTL13;nc|ENSG00000010165|Q8N6R0-3|METTL13 nc|ENSG00000010165|Q8N6R0-4|METTL13 nc|ENSG00000010165|Q8N6R0-4|METTL13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8721618652344 3 407.871883 1220.59382 NaN NaN NaN NaN NaN NaN NaN 18.198 1 18.212 17.712 18.712 0.013865 0 0 0 0.85737 1 9106 9106 0.26902 0 1 49253 413 33267 34026 57384 57384 -0.007652552678337088 QERREKHGEQ 10 Unmodified _QERREKHGEQ_ 0 0 0 REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8848876953125 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 107.81 1 101.63 101.13 102.13 -6.1757 0 0 0 1.0004 1 72082 72082 0.62683 0 1 + 49254 24949 33268 34027 57385 57385 -0.002931549842514869 QERREKHGEQ 10 Unmodified _QERREKHGEQ_ 0 0 0 REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.885498046875 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 108.92 1 102.75 102.25 103.25 -6.1757 0 0 0 1.0004 1 72773 72773 0.62683 0 1 + 49255 24949 33268 34027 57386 57386 -0.002931549842514869 QERREKHGEQ 10 Unmodified _QERREKHGEQ_ 0 0 0 REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8859558105469 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 109.1 1 102.93 102.43 103.43 -6.1757 0 0 0 1.0004 1 72882 72882 0.62683 0 1 + 49256 24949 33268 34027 57387 57387 -0.002931549842514869 QERREKHGEQ 10 Unmodified _QERREKHGEQ_ 0 0 0 REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF REV__ENST00000258807.5_1_14:24777962-24780611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8853149414062 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 109.68 1 103.51 103.01 104.01 -6.1757 0 0 0 1.0004 1 73238 73238 0.62683 0 1 + 49257 24949 33268 34027 57388 57388 -0.002931549842514869 QERRRAWQ 8 Unmodified _QERRRAWQ_ 0 0 0 ENSG00000171700|ENST00000395042|RGS19 ENSG00000171700|ENST00000395042|RGS19 ENSG00000171700|ENST00000395042|RGS19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7637939453125 2 565.302313 1128.59007 1.2026 0.00067983 -4.0692 -0.0023003 -2.8666 -0.0016205 565.8019555057344 55.648 0.16268 49.727 49.603 49.766 -5.9211 14 9 2 0 0 0 8.7369 1 35450 35450 7.9102 0 1 9112600 49258 8128 33269 34028 57389 57389 0.030921197489760743 QESEILVQEIQ 11 Unmodified _QESEILVQEIQ_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.3392333984375 2 658.340632 1314.66671 -0.027792 -1.8297E-05 -1.8416 -0.0012124 -1.8693 -0.0012307 658.3399021082912 80.356 0.31311 80.356 80.138 80.452 0 38 15 3 0 0 0 0.62338 1 44563 44563 10.151 0.76745 1 1222600 + 49259 19463 33270 34029 57390 57390 0.02196408944291761 QESIHKFLEQI 11 Unmodified _QESIHKFLEQI_ 0 0 0 REV__TUBB2A|p.R380H|1|0.06|ENSG00000137267|chr6:3154062-3154062|C/T|missense_variant REV__TUBB2A|p.R380H|1|0.06|ENSG00000137267|chr6:3154062-3154062|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 457.9162292480469 3 457.913748 1370.71942 NaN NaN NaN NaN NaN NaN NaN 47.313 1 42.232 41.732 42.732 -5.0805 0 0 0 0.93224 1 29353 29353 7.4771 2.7611 1 + 49260 28240 33271 34030 57391 57391 0.048884117977877395 QESLKLVAL 9 Unmodified _QESLKLVAL_ 0 0 0 REV__nc|ENSG00000155511|P42261-6|GRIA1;REV__ENSG00000125675|ENST00000620443|GRIA3;REV__nc|ENSG00000120251|P42262-4|GRIA2 REV__nc|ENSG00000155511|P42261-6|GRIA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8048706054688 2 500.8055 999.596446 0.49632 0.00024856 0.92438 0.00046293 1.4207 0.0007115 500.80535986457596 62.085 0.38091 55.91 55.741 56.122 -6.1757 30 21 2 0 0 0 0.085319 1 39995 39995 36.506 0 1 59220000 + 49261 29717;19507;29602 33272 34031 57392 57392 0.09663200137140393 QESSEQDDTF 10 Unmodified _QESSEQDDTF_ 0 0 0 nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B nc|ENSG00000156650|Q8WYB5-3|KAT6B nc|ENSG00000156650|Q8WYB5-3|KAT6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2308349609375 2 593.230747 1184.44694 0.67238 0.00039888 -0.73008 -0.00043311 -0.057702 -3.423E-05 593.2304094244431 59.776 0.88915 53.662 53.452 54.341 -6.1147 135 48 4 0 0 0 0.67033 1 38722 38722 6.2058 0.47393 1 201050000 49262 6472 33273 34032 57393 57393 -0.13790441734090564 QETEGCNNQ 9 Unmodified _QETEGCNNQ_ 0 0 0 REV__ENSG00000149218|ENST00000278505|ENDOD1 REV__ENSG00000149218|ENST00000278505|ENDOD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1022.551574707031 1 1022.38436 1021.37709 0.85819 0.0008774 0.053353 5.4547E-05 0.91155 0.00093195 1022.3838617712637 50.56 0.12894 45.021 44.971 45.1 -5.5391 10 7 2 0 0 0 0.18521 1 31734 31734 16.942 6.1184 1 24486000 + 49263 20986 33274 34033 57394 57394 -0.1327459888368594 QETEGCNNQ 9 Unmodified _QETEGCNNQ_ 0 0 0 REV__ENSG00000149218|ENST00000278505|ENDOD1 REV__ENSG00000149218|ENST00000278505|ENDOD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1022.38436 1021.37709 -0.63817 -0.00065245 1.9207 0.0019637 1.2825 0.0013112 1023.3878571026951 45.123 0.093483 45.123 45.095 45.189 0 0.051019 0.0007794 NaN 16.942 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1533100 + 49264 20986 33274 34033 -0.1327459888368594 QETFYFLI 8 Unmodified _QETFYFLI_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|320|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|320|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7713623046875 2 530.771126 1059.5277 1.071 0.00056848 0.79433 0.00042161 1.8654 0.00099009 530.7710671493764 100.47 0.10155 94.295 94.228 94.33 -6.1757 10 5 2 0 0 0 0.44629 1 67203 67203 39.957 1.8061 1 18814000 + 49265 29422 33275 34034 57395 57395 0.00031535837410956447 QETLLRLIPPC 11 Unmodified _QETLLRLIPPC_ 0 0 0 nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;nc|ENSG00000148120|Q8N6M6-3|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP nc|ENSG00000148120|Q8N6M6-4|AOPEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.7938842773438 2 641.863023 1281.71149 4.1028 0.0026334 -3.6328 -0.0023318 0.46996 0.00030165 641.8608490183074 98.68 0.13411 98.652 98.584 98.718 -0.028282 7 4 2 0 0 0 0.29445 1 54817 54817 10.8 0.64894 1 1213600 49266 5894 33276 34035 57396 57396 0.08190561276637709 QETPPRTAK 9 Unmodified _QETPPRTAK_ 0 0 0 REV__ENSG00000260220|ENST00000638797|CCDC187 REV__ENSG00000260220|ENST00000638797|CCDC187 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1027.557495117188 1 1027.55308 1026.54581 -0.30382 -0.00031219 0.22902 0.00023533 -0.0748 -7.6861E-05 1028.5511336913 44.671 0.098438 44.355 44.308 44.406 -0.31585 5 4 2 0 0 0 0.20139 1 23821 23821 10.824 0 1 18605000 + 49267 24576 33277 34036 57397 57397 0.033596708121422125 QETYGDDR 8 Unmodified _QETYGDDR_ 0 0 0 REV__ENSG00000188026|ENST00000376874|RILPL1 REV__ENSG00000188026|ENST00000376874|RILPL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2640686035156 2 492.206878 982.399203 -0.53406 -0.00026287 -0.49939 -0.0002458 -1.0335 -0.00050867 492.2067655402588 48.708 0.31872 48.708 48.555 48.874 0 56 14 6 0 0 0 8.7369 1 26805 26805 12.532 0 1 18519000 + 49268 23681 33278 34037 57398 57398 -0.09270051143607816 QEVDHYFDTF 10 Unmodified _QEVDHYFDTF_ 0 0 0 ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT ENSG00000151014|ENST00000280614|NOCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2797241210938 2 650.777667 1299.54078 -0.012011 -7.8163E-06 1.4805 0.00096349 1.4685 0.00095567 650.7785486228812 63.415 0.70147 63.415 63.031 63.732 0 65 33 2 0 0 0 0.63399 1 35329 35329 9.3831 1.2276 1 3311500 49269 6086 33279 34038 57399 57399 -0.09700677841146899 QEVDMNVVR 9 Unmodified _QEVDMNVVR_ 0 0 0 ENSG00000104856|ENST00000221452|RELB ENSG00000104856|ENST00000221452|RELB ENSG00000104856|ENST00000221452|RELB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.7982177734375 2 545.271498 1088.52844 0.66164 0.00036077 -3.6553 -0.0019931 -2.9937 -0.0016324 545.2695351400072 99.123 0.21931 92.948 92.878 93.097 -6.1757 16 12 2 0 0 0 0.16418 1 66030 66030 13.906 0 1 15432000 49270 2243 33280 34039 57400 57400 -0.012279927851750472 QEVEGLTVPQT 11 Unmodified _QEVEGLTVPQT_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.8073120117188 2 600.808968 1199.60338 -0.23674 -0.00014223 -1.3533 -0.00081307 -1.59 -0.00095531 600.807773127496 43.691 0.17898 43.691 43.605 43.784 0 12 8 2 0 0 0 0.39848 1 23760 23760 21.59 3.2171 1 17829000 + 49271 29885 33281 34040 57401 57401 0.011564682270318372 QEVEGLTVPQT 11 Unmodified _QEVEGLTVPQT_ 0 0 0 REV__nc|ENSG00000197321|O95425-3|SVIL REV__nc|ENSG00000197321|O95425-3|SVIL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 600.808968 1199.60338 -0.23674 -0.00014223 -1.3533 -0.00081307 -1.59 -0.00095531 600.807773127496 43.691 0.17898 43.691 43.605 43.784 0 0 0 NaN 21.59 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 17829000 + 49272 29885 33281 34040 0.011564682270318372 QEVFLPDFF 9 Unmodified _QEVFLPDFF_ 0 0 0 REV__nc|ENSG00000134873|P78369-3|CLDN10 REV__nc|ENSG00000134873|P78369-3|CLDN10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7303466796875 2 571.281857 1140.54916 0.43384 0.00024784 -2.9735 -0.0016987 -2.5396 -0.0014509 571.7818143861439 39.442 0.16743 39.442 39.302 39.469 0 11 7 2 0 0 0 0.20528 1 21151 21151 8.5933 4.264 1 1097800 + 49273 20019 33282 34041 57402 57402 -0.015490791338379495 QEVKLQPGQ 9 Unmodified _QEVKLQPGQ_ 0 0 0 nc|ENSG00000137074|Q7Z2E3-13|APTX;nc|ENSG00000137074|Q7Z2E3-3|APTX;nc|ENSG00000137074|Q7Z2E3-9|APTX;nc|ENSG00000137074|Q7Z2E3-11|APTX;nc|ENSG00000137074|Q7Z2E3-8|APTX;ENSG00000137074|ENST00000379817|APTX;nc|ENSG00000137074|Q7Z2E3|APTX nc|ENSG00000137074|Q7Z2E3-13|APTX nc|ENSG00000137074|Q7Z2E3-13|APTX MULTI-MSMS AL20221201_MKP_PDAC_01 4 1027.557983398438 1 1026.55784 1025.55056 0.98417 0.0010103 -3.9629 -0.0040681 -2.9787 -0.0030578 1027.5568893230836 49.63 0.076321 44.091 44.065 44.141 -5.5391 6 4 2 0 0 0 0.43463 1 31038 31038 10.824 2.2306 1 46137000 49274 4896 33283 34042 57403 57403 0.03880554954912441 QEVLVDMP 8 Unmodified _QEVLVDMP_ 0 0 0 REV__ENST00000599181.1_1_19:50862995-50864373:-|nuORF REV__ENST00000599181.1_1_19:50862995-50864373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7333374023438 2 465.733686 929.452819 0.79339 0.00036951 -0.75286 -0.00035063 0.040528 1.8875E-05 465.7330827125766 74.445 0.32976 74.445 74.21 74.54 0 25 14 2 0 0 0 0.61462 1 41378 41378 24.674 0 1 960740 + 49275 19789 33284 34043 57404 57404 -0.014729699654594697 QEVLVDMP 8 Unmodified _QEVLVDMP_ 0 0 0 REV__ENST00000599181.1_1_19:50862995-50864373:-|nuORF REV__ENST00000599181.1_1_19:50862995-50864373:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7891235351562 2 465.733686 929.452819 0.79339 0.00036951 -0.75286 -0.00035063 0.040528 1.8875E-05 465.7330827125766 74.445 0.32976 74.445 74.21 74.54 0 25 14 2 0 0 0 8.7369 1 41324 41324 18.135 0 1 960740 + 49276 19789 33284 34043 57405 57405 -0.014729699654594697 QEVTFHSVDF 10 Unmodified _QEVTFHSVDF_ 0 0 0 ENST00000368679.8_1_10:127703041-127703137:-|nuORF ENST00000368679.8_1_10:127703041-127703137:-|nuORF ENST00000368679.8_1_10:127703041-127703137:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.2974243164062 2 604.782753 1207.55095 0.7341 0.00044397 -1.5534 -0.00093947 -0.81931 -0.0004955 604.782604241598 57.591 0.19619 57.525 57.397 57.593 -0.066036 12 9 2 0 0 0 0.23745 1 31366 31366 5.7319 0.83484 1 1269100 49277 12280 33285 34044 57406 57406 -0.044520701158944576 QEVVFLQEL 9 Unmodified _QEVVFLQEL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8005981445312 2 552.800414 1103.58628 0.65422 0.00036165 -0.40883 -0.000226 0.24539 0.00013565 552.8003109318805 57.976 0.86704 57.976 57.395 58.262 0 124 38 4 0 0 0 0.0082353 3 32329 32113;32219;32329 107.19 13.582 1 28898000 + 49278 21094 33286 34045 57407;57408;57409 57409 0.03862592411906007 QEVVFLQEL 9 Unmodified _QEVVFLQEL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.798583984375 2 552.800414 1103.58628 0.65422 0.00036165 -0.40883 -0.000226 0.24539 0.00013565 552.8003109318805 57.976 0.86704 57.976 57.395 58.262 0 124 38 4 0 0 0 0.079233 1 32008 32008 36.127 15.712 1 28898000 + 49279 21094 33286 34045 57410 57410 0.03862592411906007 QEVVFLQEL 9 Unmodified _QEVVFLQEL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8018188476562 2 552.800414 1103.58628 0.41294 0.00022828 -1.545 -0.00085409 -1.1321 -0.00062582 553.2992249143016 58.288 0.59814 57.797 57.555 58.153 -0.49079 67 28 3 0 0 0 0.30202 1 31847 31847 17.113 6.289 1 2247800 + 49280 21094 33286 34045 57411 57411 0.03862592411906007 QEVVFLQEL 9 Unmodified _QEVVFLQEL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MSMS AL20221201_MKP_PDAC_01 4 552.801025390625 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 64.187 1 58.012 57.512 58.512 -6.1757 0 0 0 0.044471 1 41563 41563 60.074 16.216 1 + 49281 21094 33286 34045 57412 57412 0.03862592411906007 QEVVFLQEL 9 Unmodified _QEVVFLQEL_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MSMS AL20221201_MKP_PDAC_01 4 552.801513671875 2 552.800414 1103.58628 NaN NaN NaN NaN NaN NaN NaN 64.374 1 58.199 57.699 58.699 -6.1757 0 0 0 0.019743 1 41699 41699 78.728 2.9672 1 + 49282 21094 33286 34045 57413 57413 0.03862592411906007 QEWDREAAF 9 Unmodified _QEWDREAAF_ 0 0 0 REV__ENSG00000179958|ENST00000319285|DCTPP1 REV__ENSG00000179958|ENST00000319285|DCTPP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.2986450195312 2 576.259445 1150.50434 1.4482 0.00083453 -2.8961 -0.0016689 -1.4479 -0.00083436 576.7598724717877 58.464 0.3004 52.39 52.28 52.58 -6.0745 36 16 3 0 0 0 0.19613 1 37528 37528 12.532 3.1841 1 23307000 + 49283 23131 33287 34046 57414 57414 -0.06489509947209626 QEWIMRWFDEF 11 Unmodified _QEWIMRWFDEF_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG REV__nc|ENSG00000144724|P23470-2|PTPRG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 793.8584594726562 2 793.858469 1585.70238 NaN NaN NaN NaN NaN NaN NaN 104.47 1 104.42 103.92 104.92 -0.048737 0 0 0 0.9435 1 58002 58002 0 0 1 + 49284 20730 33288 34047 57415 57415 -0.06703832079733729 QEWLSPDSASL 11 Unmodified _QEWLSPDSASL_ 0 0 0 REV__ENSG00000239388|ENST00000487349|ASB14 REV__ENSG00000239388|ENST00000487349|ASB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.2940673828125 2 616.793318 1231.57208 -0.32434 -0.00020005 -1.9886 -0.0012266 -2.313 -0.0014266 616.7921081419872 29.902 0.57002 29.902 29.793 30.363 0 70 29 4 0 0 0 0.48742 1 15597 15597 21.537 6.6987 1 6243700 + 49285 24438 33289 34048 57416 57416 -0.03444104807022086 QEWWLTPVIS 10 Unmodified _QEWWLTPVIS_ 0 0 0 ENST00000490553.1_1_2:101898195-101898495:-|nuORF ENST00000490553.1_1_2:101898195-101898495:-|nuORF ENST00000490553.1_1_2:101898195-101898495:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8271484375 2 629.826963 1257.63937 NaN NaN NaN NaN NaN NaN NaN 73.156 1 72.68 72.18 73.18 -0.47588 0 0 0 0.97302 1 40032 40032 3.5965 0.60125 1 49286 14261 33290 34049 57417 57417 0.02085970194548281 QEYHIVKK 8 Unmodified _QEYHIVKK_ 0 0 0 ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF ENSG00000133401|ENST00000438447|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.796630859375 2 522.795466 1043.57638 0.88115 0.00046066 -0.92849 -0.00048541 -0.047332 -2.4745E-05 522.7950839057205 54.775 0.34389 54.775 54.553 54.897 0 34 14 3 0 0 0 0.77186 1 30473 30473 10.824 4.1008 1 20189000 49287 4513 33291 34050 57418 57418 0.05633449197171103 QEYLISQV 8 Unmodified _QEYLISQV_ 0 0 0 ENST00000489476.5_1_2:73956300-73964431:-|nuORF;nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENST00000497464.5_1_2:73957656-73964442:-|nuORF;ENST00000463231.5_1_2:73956300-73964442:-|nuORF;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB ENST00000489476.5_1_2:73956300-73964431:-|nuORF ENST00000489476.5_1_2:73956300-73964431:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5113525390625 1 979.509488 978.502212 -0.13214 -0.00012943 0.82568 0.00080876 0.69354 0.00067933 979.5098677073812 78.697 0.28841 78.211 78.035 78.323 -0.48596 21 10 3 0 0 0 0.79669 1 43142 43142 8.5933 0.68312 1 1164400 49288 14239 33292 34051 57419 57419 0.012100613149982564 QEYRDEQDLNM 11 Unmodified _QEYRDEQDLNM_ 0 0 0 ENSG00000172361|ENST00000398545|CFAP53 ENSG00000172361|ENST00000398545|CFAP53 ENSG00000172361|ENST00000398545|CFAP53 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 720.8037719726562 2 720.80663 1439.59871 NaN NaN NaN NaN NaN NaN NaN 81.182 1 81.182 80.682 81.682 0 0 0 0 0.94184 1 45063 45063 1.1933 0.735 1 49289 8206 33293 34052 57420 57420 -0.10350783978014988 QEYSTKYF 8 Unmodified _QEYSTKYF_ 0 0 0 nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4 nc|ENSG00000178568|Q15303-4|ERBB4 nc|ENSG00000178568|Q15303-4|ERBB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.248291015625 2 533.248015 1064.48148 0.31074 0.0001657 0.70262 0.00037467 1.0134 0.00054037 533.2483841388198 95.568 0.40266 95.568 95.338 95.741 0 55 25 3 0 0 0 0.80232 1 52767 52767 5.2307 0.47466 1 998160 49290 8760 33294 34053 57421 57421 -0.0481852906466429 QEYVFSPGCGP 11 Unmodified _QEYVFSPGCGP_ 0 0 0 ENST00000487121.1_1_2:47136034-47168791:-|nuORF ENST00000487121.1_1_2:47136034-47168791:-|nuORF ENST00000487121.1_1_2:47136034-47168791:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2542724609375 2 592.258056 1182.50156 NaN NaN NaN NaN NaN NaN NaN 81.681 1 81.186 80.686 81.686 -0.4952 0 0 0 0.94184 1 44725 44725 1.1933 0.50296 1 49291 14195 33295 34054 57422 57422 -0.0823910139633881 QFALAFHLI 9 Unmodified _QFALAFHLI_ 0 0 0 ENSG00000085832|ENST00000371733|EPS15 ENSG00000085832|ENST00000371733|EPS15 ENSG00000085832|ENST00000371733|EPS15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3009033203125 2 530.302927 1058.5913 NaN NaN NaN NaN NaN NaN NaN 40.505 1 40.51 40.01 41.01 0.0050545 0 0 0 0.73776 1 21602 21602 7.9102 1.187 1 49292 1420 33296 34055 57423 57423 0.0643494106518574 QFALASHFF 9 Unmodified _QFALASHFF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.26953125 2 534.269084 1066.52362 0.22213 0.00011868 0.2811 0.00015019 0.50323 0.00026886 534.269269759906 75.506 0.33804 75.554 75.369 75.707 0.047951 38 15 3 0 0 0 0.016184 1 41625 41625 67.344 38.262 1 3335600 49293 5129 33297 34056 57424 57424 -0.006985088656165317 QFALASHFF 9 Unmodified _QFALASHFF_ 0 0 0 nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 nc|ENSG00000139163|Q9HBU6|ETNK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2669677734375 2 534.269084 1066.52362 1.1885 0.00063499 -1.3546 -0.0007237 -0.16605 -8.8715E-05 534.7698261142235 94.232 0.33917 88.056 87.88 88.219 -6.1757 33 19 2 0 0 0 0.038285 1 62430 62430 50.855 31.598 1 10237000 49294 5129 33297 34056 57425 57425 -0.006985088656165317 QFDDLDQLF 9 Unmodified _QFDDLDQLF_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2315063476562 2 570.764029 1139.5135 0.75856 0.00043296 -1.2484 -0.00071254 -0.48983 -0.00027958 570.7634234748979 73.339 0.32808 73.339 73.126 73.454 0 40 17 3 0 0 0 0.19758 1 40786 40786 13.042 5.7532 1 7058000 + 49295 17465 33298 34057 57426 57426 -0.05067161381521146 QFDNYGEEF 9 Unmodified _QFDNYGEEF_ 0 0 0 nc|ENSG00000079785|Q92499-3|DDX1;ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 nc|ENSG00000079785|Q92499-3|DDX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7297973632812 2 574.730186 1147.44582 0.0027003 1.5519E-06 -1.0014 -0.00057556 -0.99875 -0.00057401 574.7299091829026 52.014 0.24207 52.014 51.886 52.129 0 17 10 2 0 0 0 0.14602 1 28770 28770 28.487 19.104 1 4158500 49296 1284 33299 34058 57427 57427 -0.12200611312323417 QFDVATHL 8 Unmodified _QFDVATHL_ 0 0 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7371520996094 2 465.737617 929.460681 0.6518 0.00030357 -0.90101 -0.00041963 -0.24921 -0.00011606 465.7371985259546 48.073 0.35592 48.073 47.875 48.231 0 51 17 4 0 0 0 0.19792 2 26410 26292;26410 70.716 32.564 1 60359000 49297 9155 33300 34059 57428;57429 57429 -0.006870746536719707 QFDVATHL 8 Unmodified _QFDVATHL_ 0 0 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7373352050781 2 465.737617 929.460681 0.36808 0.00017143 -0.2449 -0.00011406 0.12318 5.7371E-05 465.73740797427376 48.294 0.2901 47.922 47.791 48.081 -0.37172 24 14 2 0 0 0 0.37649 1 25924 25924 46.921 23.772 1 5942200 49298 9155 33300 34059 57430 57430 -0.006870746536719707 QFDVATHL 8 Unmodified _QFDVATHL_ 0 0 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7382507324219 2 465.737617 929.460681 1.2089 0.00056303 -0.07115 -3.3137E-05 1.1378 0.00052989 465.73759286444863 54.094 0.50682 48.228 47.947 48.454 -5.8653 48 29 2 0 0 0 0.21583 2 34262 34132;34262 67.344 22.937 1 108610000 49299 9155 33300 34059 57431;57432 57432 -0.006870746536719707 QFEEAFAQF 9 Unmodified _QFEEAFAQF_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7535400390625 2 558.753464 1115.49238 0.093602 5.23E-05 -0.63903 -0.00035706 -0.54542 -0.00030476 558.7527427339326 70.824 0.31726 70.824 70.637 70.954 0 75 38 2 0 0 0 0.14602 1 39396 39396 28.487 5.3384 1 3155900 49300 1133 33301 34060 57433 57433 -0.0607512669037078 QFEEPLLYI 9 Unmodified _QFEEPLLYI_ 0 0 0 REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.303466796875 2 576.30279 1150.59103 0.44873 0.0002586 0.59772 0.00034447 1.0465 0.00060307 576.3030411798335 99.698 0.20571 99.54 99.407 99.613 -0.1575 13 6 3 0 0 0 0.36964 1 54430 54430 13.906 0 1 3992500 + 49301 28635 33302 34061 57434 57434 0.021754765546802446 QFEEPLLYI 9 Unmodified _QFEEPLLYI_ 0 0 0 REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 576.30279 1150.59103 0.35977 0.00020734 0.49652 0.00028614 0.85629 0.00049348 576.3031736965969 99.577 0.11794 99.577 99.503 99.621 0 0.024382 9.1449E-05 NaN 13.906 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 576350 + 49302 28635 33302 34061 0.021754765546802446 QFEEPLLYI 9 Unmodified _QFEEPLLYI_ 0 0 0 REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 576.30279 1150.59103 0.44873 0.0002586 0.59772 0.00034447 1.0465 0.00060307 576.3030411798335 99.698 0.20571 99.54 99.407 99.613 -0.1575 -0.012219 0.0002081 NaN 13.906 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 3992500 + 49303 28635 33302 34061 0.021754765546802446 QFEEPLLYI 9 Unmodified _QFEEPLLYI_ 0 0 0 REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.30279 1150.59103 3.5322 0.0020356 -0.23832 -0.00013735 3.2939 0.0018983 576.3021866312592 99.577 0.13596 99.54 99.477 99.613 -0.036301 -0.012163 -0.00075553 NaN 13.906 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1056400 + 49304 28635 33302 34061 0.021754765546802446 QFELLELQLNL 11 Unmodified _QFELLELQLNL_ 0 0 0 REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF REV__ENST00000572176.1_1_17:3838413-3839645:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.8817749023438 2 680.37956 1358.74457 0.56487 0.00038433 -0.67425 -0.00045874 -0.10937 -7.4416E-05 680.3790797627561 99.762 0.18687 93.587 93.49 93.677 -6.1757 27 12 4 0 0 0 0.26767 1 66555 66555 28.495 2.2264 1 41337000 + 49305 28985 33303 34062 57435 57435 0.07954466600335763 QFEQFRGYHFH 11 Unmodified _QFEQFRGYHFH_ 0 0 0 REV__nc|ENSG00000185745|P09914-2|IFIT1 REV__nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2333679199219 3 499.233704 1494.67928 -0.012149 -6.0653E-06 -0.522 -0.0002606 -0.53415 -0.00026666 499.2334774406117 70.341 0.36272 69.862 69.627 69.99 -0.47903 59 18 5 0 0 0 0.71618 1 38423 38423 2.4348 0 1 8552600 + 49306 23522 33304 34063 57436 57436 -0.04827090082153518 QFETFKTRSF 10 Unmodified _QFETFKTRSF_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883666992188 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 16.66 1 16.665 16.165 17.165 0.0050564 0 0 0 0.94014 1 8364 8364 3.3196 1.4133 1 + 49307 20157 33305 34064 57437 57437 0.0072018456346540916 QFETFKTRSF 10 Unmodified _QFETFKTRSF_ 0 0 0 REV__ENSG00000136367|ENST00000419474|ZFHX2 REV__ENSG00000136367|ENST00000419474|ZFHX2 MSMS AL20221201_MKP_PDAC_01 4 430.888427734375 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 16.649 1 14.092 13.592 14.592 -2.557 0 0 0 0.94014 1 8640 8640 5.7834 3.8771 1 + 49308 20157 33305 34064 57438 57438 0.0072018456346540916 QFEVFDIFVI 10 Unmodified _QFEVFDIFVI_ 0 0 0 ENST00000378954.8_1_2:38522031-38522217:-|nuORF ENST00000378954.8_1_2:38522031-38522217:-|nuORF ENST00000378954.8_1_2:38522031-38522217:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5567321777344 3 419.556902 1255.64888 -0.044471 -1.8658E-05 -1.2762 -0.00053543 -1.3206 -0.00055409 419.5562931424987 54.299 0.27822 54.232 54.021 54.299 -0.066936 31 13 3 0 0 0 0.65282 1 29441 29441 4.7159 0 1 4510600 49309 12556 33306 34065 57439 57439 0.03127738480066 QFEWLADI 8 Unmodified _QFEWLADI_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2542724609375 2 511.2531 1020.49165 0.25203 0.00012885 -0.14341 -7.3321E-05 0.10862 5.5532E-05 511.25299373443755 91.642 0.38927 91.161 90.962 91.351 -0.48092 58 25 3 0 0 0 0.80383 1 50032 50032 4.3292 0 1 2594600 49310 5216 33307 34066 57440 57440 -0.017779213394533144 QFFDEEEETG 10 Unmodified _QFFDEEEETG_ 0 0 0 ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6 ENSG00000112701|ENST00000447266|SENP6 ENSG00000112701|ENST00000447266|SENP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8316345214844 3 410.831419 1229.47243 0.75004 0.00030814 0.0015006 6.1648E-07 0.75154 0.00030876 410.8312504279535 75.304 0.12479 74.827 74.759 74.884 -0.47714 6 5 2 0 0 0 0.72247 1 41235 41235 0.13989 0 1 551210 49311 2912 33308 34067 57441 57441 -0.1331296721164108 QFFHQARYF 9 Unmodified _QFFHQARYF_ 0 0 0 ENST00000518696.5_1_8:121457540-121457615:-|nuORF ENST00000518696.5_1_8:121457540-121457615:-|nuORF ENST00000518696.5_1_8:121457540-121457615:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3040771484375 2 622.30399 1242.59343 NaN NaN NaN NaN NaN NaN NaN 91.32 1 90.825 90.325 91.325 -0.49457 0 0 0 0.85737 1 49917 49917 0.6015 0 1 49312 14694 33309 34068 57442 57442 -0.01816630197026825 QFFNSKRLLL 10 Unmodified _QFFNSKRLLL_ 0 0 0 REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF REV__ENST00000523850.5_1_8:85618206-85717007:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5846862792969 3 422.583674 1264.72919 0.78151 0.00033025 0.70452 0.00029772 1.486 0.00062797 422.58409124022086 93.528 0.24379 87.353 87.26 87.504 -6.1757 18 14 2 0 0 0 0.1942 1 61936 61936 23.801 3.8142 1 9709200 + 49313 28321 33310 34069 57443 57443 0.10741644593827004 QFFPAVWY 8 Unmodified _QFFPAVWY_ 0 0 0 REV__ENST00000447600.1_1_1:11159806-11161858:+|nuORF REV__ENST00000447600.1_1_1:11159806-11161858:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.262451171875 2 529.260728 1056.5069 NaN NaN NaN NaN NaN NaN NaN 60.475 1 60.475 59.975 60.975 0 0 0 0 0.93066 1 33726 33726 14.582 4.3983 1 + 49314 27164 33311 34070 57444 57444 -0.019090097515800153 QFFRRFGFAVL 11 Unmodified _QFFRRFGFAVL_ 0 0 0 REV__ENSG00000006283|ENST00000359106|CACNA1G REV__ENSG00000006283|ENST00000359106|CACNA1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.3880004882812 2 694.385314 1386.75608 0.67376 0.00046785 1.024 0.00071104 1.6977 0.0011789 694.8875397851527 91.865 0.57798 85.689 85.312 85.89 -6.1757 66 32 3 0 0 0 0.28407 1 60615 60615 27.629 8.2669 1 13045000 + 49315 16987 33312 34071 57445 57445 0.0781675320499744 QFGAWFRA 8 Unmodified _QFGAWFRA_ 0 0 0 nc|ENSG00000160271|Q12967-3|RALGDS;nc|ENSG00000160271|Q12967-4|RALGDS;nc|ENSG00000160271|Q12967-6|RALGDS;nc|ENSG00000160271|Q12967-5|RALGDS;ENSG00000160271|ENST00000372050|RALGDS;nc|ENSG00000160271|Q12967-2|RALGDS nc|ENSG00000160271|Q12967-3|RALGDS nc|ENSG00000160271|Q12967-3|RALGDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 985.4961547851562 1 982.489362 981.482085 0.61804 0.00060722 1.4707 0.0014449 2.0887 0.0020521 982.4910246696462 75.551 0.37018 75.074 74.864 75.235 -0.47714 52 20 4 0 0 0 0.80992 1 41336 41336 0.69038 0.69038 1 8600400 49316 6710 33313 34072 57446 57446 -0.0093964483429545 QFGESPIP 8 Unmodified _QFGESPIP_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.718505859375 2 437.718893 873.423233 0.39839 0.00017438 -0.67212 -0.0002942 -0.27373 -0.00011982 437.7186129427171 91.646 0.33103 91.165 90.977 91.308 -0.48092 44 22 2 0 0 0 0.74163 1 50137 50137 13.508 0 1 2581400 49317 8841 33314 34073 57447 57447 -0.018541659192919724 QFGESPIP 8 Unmodified _QFGESPIP_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 437.718893 873.423233 0.39839 0.00017438 -0.67212 -0.0002942 -0.27373 -0.00011982 437.7186129427171 91.646 0.33103 91.165 90.977 91.308 -0.48092 0.021462 -0.0003545 NaN 13.508 44 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2581400 49318 8841 33314 34073 -0.018541659192919724 QFGSEVPRCGE 11 Unmodified _QFGSEVPRCGE_ 0 0 0 REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3177490234375 2 604.771862 1207.52917 -0.1784 -0.00010789 -2.0637 -0.0012481 -2.2421 -0.001356 604.7701746848461 55.898 0.21961 55.42 55.3 55.52 -0.47798 19 10 3 0 0 0 0.29817 1 30394 30394 8.1555 0.8663 1 1618900 + 49319 27854 33315 34074 57448 57448 -0.06629198136147352 QFHDLMELF 9 Oxidation (M) _QFHDLM(Oxidation (M))ELF_ QFHDLM(1)ELF QFHDLM(71)ELF 0 0 1 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENST00000520515.5_1_5:133541561-133657575:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2802734375 2 598.276249 1194.53795 0.53725 0.00032142 0.80745 0.00048308 1.3447 0.0008045 598.2769433409001 71.293 0.36172 70.816 70.659 71.02 -0.47736 38 15 3 0 0 0 0.013323 1 38979 38979 71.134 22.788 1 3379400 49320 2224 33316 34075 57449 57449 383 -0.051542244996426234 QFHDLMELF 9 Oxidation (M) _QFHDLM(Oxidation (M))ELF_ QFHDLM(1)ELF QFHDLM(89)ELF 0 0 1 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENST00000520515.5_1_5:133541561-133657575:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2783813476562 2 598.276249 1194.53795 0.5956 0.00035633 0.79329 0.0004746 1.3889 0.00083094 598.2770795877946 71.835 0.33335 71.359 71.192 71.525 -0.47609 29 12 3 0 0 0 0.008678 1 39302 39302 88.904 40.558 1 2004000 49321 2224 33316 34075 57450 57450 383 -0.051542244996426234 QFHDLMELF 9 Unmodified _QFHDLMELF_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENST00000520515.5_1_5:133541561-133657575:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.781982421875 2 590.278792 1178.54303 0.45174 0.00026665 0.95829 0.00056566 1.41 0.00083231 590.2791193816616 88.699 0.32536 88.195 88.046 88.371 -0.50423 20 13 2 0 0 0 0.25681 1 48512 48512 19.257 8.4331 1 415260 49322 2224 33316 34076 57451 57451 -0.039099206370337924 QFHDLMELF 9 Unmodified _QFHDLMELF_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;nc|ENSG00000113575|P67775-2|PPP2CA;ENST00000520515.5_1_5:133541561-133657575:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2791137695312 2 590.278792 1178.54303 0.89252 0.00052683 -0.43428 -0.00025634 0.45824 0.00027049 590.2788282440989 99.477 0.12698 93.302 93.228 93.354 -6.1757 18 7 3 0 0 0 0.0088174 1 66253 66253 103.75 42.391 1 47227000 49323 2224 33316 34076 57452 57452 -0.039099206370337924 QFHMQLNEM 9 2 Oxidation (M) _QFHM(Oxidation (M))QLNEM(Oxidation (M))_ QFHM(1)QLNEM(1) QFHM(51)QLNEM(51) 0 0 2 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2548828125 2 605.254991 1208.49543 -0.57227 -0.00034637 1.4688 0.00088897 0.89649 0.0005426 605.2559330986801 22.226 0.23875 22.226 22.065 22.304 0 20 11 2 0 0 0 0.038285 1 11255 11255 50.855 40.781 1 1271300 49324 5149 33317 34077 57453 57453 944;945 -0.10047942899518603 QFHMQLNEM 9 2 Oxidation (M) _QFHM(Oxidation (M))QLNEM(Oxidation (M))_ QFHM(1)QLNEM(1) QFHM(51)QLNEM(51) 0 0 2 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.7473754882812 2 605.254991 1208.49543 -0.47216 -0.00028577 -2.5315 -0.0015322 -3.0037 -0.001818 605.2559855994828 25.262 0.19296 22.379 22.338 22.531 -2.8831 14 10 2 0 0 0 0.038285 1 13851 13851 50.855 31.598 1 2562300 49325 5149 33317 34077 57454 57454 944;945 -0.10047942899518603 QFHMQLNEM 9 Unmodified _QFHMQLNEM_ 0 0 0 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2595825195312 2 589.260076 1176.5056 0.93753 0.00055245 -0.56069 -0.00033039 0.37684 0.00022206 589.259924456466 58.321 0.24524 52.247 52.126 52.371 -6.0745 22 12 2 0 0 0 0.031062 1 37371 37371 54.774 42.242 1 15302000 49326 5149 33317 34078 57455 57455 -0.07559335174300941 QFHMQLNEM 9 Oxidation (M) _QFHMQLNEM(Oxidation (M))_ QFHMQLNEM(1) QFHM(-83)QLNEM(83) 0 0 1 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MSMS AL20221201_MKP_PDAC_01 4 597.2565307617188 2 597.257533 1192.50051 NaN NaN NaN NaN NaN NaN NaN 44.738 1 39.886 39.386 40.386 -4.852 0 0 0 0.014983 1 27343 27343 85.272 35.339 2 49327 5149 33317 34079 57456 57456 944;945 -0.08803639036932509 QFHNWQPDSF 10 Unmodified _QFHNWQPDSF_ 0 0 0 REV__nc|ENSG00000103995|O94986-2|CEP152 REV__nc|ENSG00000103995|O94986-2|CEP152 MSMS AL20221201_MKP_PDAC_01 4 653.2869262695312 2 653.285994 1304.55744 NaN NaN NaN NaN NaN NaN NaN 64.867 1 58.691 58.191 59.191 -6.1757 0 0 0 0.71157 1 42060 42060 16.149 0 1 + 49328 18331 33318 34080 57457 57457 -0.08266132164521878 QFHSHMVL 8 Unmodified _QFHSHMVL_ 0 0 0 REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3 REV__nc|ENSG00000240184|Q9UN70-2|PCDHGC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7474060058594 2 499.747462 997.480371 NaN NaN NaN NaN NaN NaN NaN 68.063 1 68.063 67.563 68.563 0 0 0 0 0.97444 1 37950 37950 2.8892 0 1 + 49329 29963 33319 34081 57458 57458 -0.018470219145456213 QFIDKPVCF 9 Carbamidomethyl (C) _QFIDKPVC(Carbamidomethyl (C))F_ QFIDKPVC(1)F QFIDKPVC(50)F 0 1 0 ENSG00000106399|ENST00000223129|RPA3;ENST00000462723.1_1_7:7678661-7680049:-|nuORF ENSG00000106399|ENST00000223129|RPA3 ENSG00000106399|ENST00000223129|RPA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.289794921875 2 577.289159 1152.56377 0.86518 0.00049946 -0.073784 -4.2595E-05 0.79139 0.00045686 577.2893287199877 61.875 1.682 55.7 54.566 56.248 -6.1757 204 90 5 0 0 0 0.039985 2 39907 39907;40173 49.933 21.446 1 647760000 49330 2425 33320 34082 57459;57460 57459 240 -0.006413302573719193 QFIEDKHSEF 10 Unmodified _QFIEDKHSEF_ 0 0 0 REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF;REV__ENSG00000102054|ENST00000380087|RBBP7 REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.20556640625 3 427.203299 1278.58807 NaN NaN NaN NaN NaN NaN NaN 37.313 1 37.334 36.834 37.834 0.021545 0 0 0 0.99091 1 19800 19800 0.69767 0.19171 1 + 49331 21655;18218 33321 34083 57461 57461 -0.040083985701585334 QFIHPEPLH 9 Unmodified _QFIHPEPLH_ 0 0 0 REV__ZNF468|p.H233Ifs*3|1|0.28|ENSG00000204604|chr19:52841597-52841597|G/-|frameshift_variant REV__ZNF468|p.H233Ifs*3|1|0.28|ENSG00000204604|chr19:52841597-52841597|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.1980895996094 3 373.197819 1116.57163 1.731 0.000646 -0.079422 -2.964E-05 1.6516 0.00061636 373.19754154357895 21.648 0.3268 18.913 18.775 19.102 -2.7348 42 18 3 0 0 0 0.43463 1 11655 11655 7.1017 2.0542 1 11189000 + 49332 24186 33322 34084 57462 57462 0.018005650544182572 QFINVDLAR 9 Unmodified _QFINVDLAR_ 0 0 0 REV__nc|ENSG00000138674|O94979-10|SEC31A REV__nc|ENSG00000138674|O94979-10|SEC31A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.2011413574219 3 359.201341 1074.58219 -0.96878 -0.00034799 0.33893 0.00012174 -0.62984 -0.00022624 359.2014716535542 32.769 0.40811 32.769 32.58 32.988 0 49 20 3 0 0 0 0.15882 1 17222 17222 27.223 0 1 6902200 + 49333 29658 33323 34085 57463 57463 0.047885477088584594 QFINVDLAR 9 Unmodified _QFINVDLAR_ 0 0 0 REV__nc|ENSG00000138674|O94979-10|SEC31A REV__nc|ENSG00000138674|O94979-10|SEC31A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.0280151367188 3 359.201341 1074.58219 -0.27048 -9.7158E-05 0.44638 0.00016034 0.1759 6.3182E-05 359.2018845540051 32.868 0.29109 32.709 32.622 32.913 -0.15918 13 11 2 0 0 0 0.21847 1 17203 17203 0.86438 0 1 797760 + 49334 29658 33323 34085 57464 57464 0.047885477088584594 QFITSTNTF 9 Unmodified _QFITSTNTF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7618408203125 2 529.761289 1057.50803 0.040098 2.1243E-05 0.010738 5.6884E-06 0.050836 2.6931E-05 529.7611900338803 56.964 0.31902 56.478 56.286 56.605 -0.48554 38 14 3 0 0 0 0.12841 1 30935 30935 30.225 10.968 1 14859000 49335 8954 33324 34086 57465 57465 -0.018428401733444844 QFITSTNTF 9 Unmodified _QFITSTNTF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 529.761289 1057.50803 0.096479 5.1111E-05 0.27184 0.00014401 0.36832 0.00019512 529.7612176543071 56.339 0.19339 56.339 56.301 56.495 0 -0.069381 0.0002451 NaN 30.225 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1391300 49336 8954 33324 34086 -0.018428401733444844 QFKDPEQTTF 10 Unmodified _QFKDPEQTTF_ 0 0 0 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 ENSG00000198356|ENST00000357332|GET3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.79541015625 2 620.79586 1239.57717 0.33708 0.00020926 0.21415 0.00013294 0.55123 0.0003422 620.7954132352437 38.006 0.20313 38.006 37.885 38.089 0 16 9 2 0 0 0 0.6606 1 20262 20262 7.2892 0.56607 1 1241400 49337 10081 33325 34087 57466 57466 -0.033038009444453564 QFKNKCRRK 9 Unmodified _QFKNKCRRK_ 0 0 0 REV__ENSG00000132275|ENST00000254605|RRP8 REV__ENSG00000132275|ENST00000254605|RRP8 MSMS AL20221201_MKP_PDAC_01 4 403.2333374023438 3 403.23287 1206.67678 NaN NaN NaN NaN NaN NaN NaN 13.967 1 11.464 10.964 11.964 -2.5029 0 0 0 0.86004 1 7080 7080 0.26902 0 1 + 49338 19838 33326 34088 57467 57467 0.08170782979186697 QFLCHYCCES 10 Unmodified _QFLCHYCCES_ 0 0 0 REV__ENSG00000165102|ENST00000379644|HGSNAT REV__ENSG00000165102|ENST00000379644|HGSNAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.7318115234375 2 616.730294 1231.44604 NaN NaN NaN NaN NaN NaN NaN 7.9936 1 8.0088 7.5088 8.5088 0.015238 0 0 0 1.0024 1 3985 3985 0.40072 0.093686 1 + 49339 21979 33327 34089 57468 57468 -0.1604297418000442 QFLEDNSYLS 10 Unmodified _QFLEDNSYLS_ 0 0 0 REV__ENSG00000106278|ENST00000393386|PTPRZ1 REV__ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8560791015625 3 405.855787 1214.54553 -0.14937 -6.0624E-05 1.2794 0.00051926 1.1301 0.00045864 405.85651435335143 52.356 0.42055 52.356 52.152 52.573 0 65 18 5 0 0 0 0.67033 1 28908 28908 3.3196 0 1 33180000 + 49340 18496 33328 34090 57469 57469 -0.05315793698378002 QFLFFCLSF 9 Unmodified _QFLFFCLSF_ 0 0 0 REV__ENST00000489256.5_1_2:242051898-242052042:-|nuORF REV__ENST00000489256.5_1_2:242051898-242052042:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5238952636719 3 384.524656 1150.55214 NaN NaN NaN NaN NaN NaN NaN 18.593 1 18.593 18.093 19.093 0 0 0 0 0.84564 1 9254 9254 1.0715 0 1 + 49341 27856 33329 34091 57470 57470 -0.017115272807131987 QFLFIDLAI 9 Unmodified _QFLFIDLAI_ 0 0 0 ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1986389160156 3 360.542704 1078.60628 -0.036443 -1.3139E-05 -2.5304 -0.00091232 -2.5669 -0.00092546 360.54203088765996 15.81 0.15334 15.815 15.746 15.9 0.0050564 22 10 3 0 0 0 0.20727 1 7942 7942 4.897 0 1 1059400 49342 4527 33330 34092 57471 57471 0.07012388142516102 QFLFQTYL 8 Unmodified _QFLFQTYL_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2779541015625 2 530.279118 1058.54368 0.75904 0.00040251 -0.4109 -0.00021789 0.34815 0.00018462 530.2788049889589 50.074 0.43989 49.681 49.532 49.971 -0.3923 65 21 5 0 0 0 0.64853 1 27022 27022 21.747 0 1 104090000 49343 6854 33331 34093 57472 57472 0.016752420743159746 QFLFYTGFF 9 Unmodified _QFLFYTGFF_ 0 0 0 REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF REV__ENST00000460773.5_1_X:138814597-138879340:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.285400390625 2 585.286943 1168.55933 -0.07395 -4.3282E-05 1.3609 0.00079653 1.287 0.00075325 585.2878944196731 54.694 0.35551 54.227 54.025 54.381 -0.46664 30 17 3 0 0 0 0.39863 1 29577 29577 12.532 1.7076 1 7551000 + 49344 18209 33332 34094 57473 57473 -0.018204714086323293 QFLGQMTQL 9 Unmodified _QFLGQMTQL_ 0 0 0 ENSG00000113296|ENST00000350881|THBS4 ENSG00000113296|ENST00000350881|THBS4 ENSG00000113296|ENST00000350881|THBS4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.230224609375 2 533.273509 1064.53247 0.93529 0.00049877 -0.32345 -0.00017249 0.61184 0.00032628 533.2734422656465 59.314 0.32276 53.24 53.15 53.473 -6.0745 25 17 2 0 0 0 0.17729 1 38086 38086 21.537 8.4945 1 15882000 49345 2955 33333 34095 57474 57474 0.0027809670855276636 QFLHVGGGVGF 11 Unmodified _QFLHVGGGVGF_ 0 0 0 REV__ENSG00000171806|ENST00000310392|METTL18 REV__ENSG00000171806|ENST00000310392|METTL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.1974792480469 3 373.197819 1116.57163 -0.49022 -0.00018295 0.12112 4.5201E-05 -0.3691 -0.00013775 373.19769195398567 19.564 0.43079 19.592 19.325 19.756 0.028357 98 41 3 0 0 0 0.70701 1 9827 9827 3.0723 1.4196 1 2221600 + 49346 22603 33334 34096 57475 57475 0.018005650544409946 QFLHVGGGVGF 11 Unmodified _QFLHVGGGVGF_ 0 0 0 REV__ENSG00000171806|ENST00000310392|METTL18 REV__ENSG00000171806|ENST00000310392|METTL18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.1980895996094 3 373.197819 1116.57163 0.069981 2.6117E-05 1.4182 0.00052927 1.4882 0.00055538 373.1980027004028 19.658 0.37409 19.665 19.466 19.84 0.0078506 54 20 4 0 0 0 0.70701 1 9948 9948 1.4551 0.24029 1 3485000 + 49347 22603 33334 34096 57476 57476 0.018005650544409946 QFLHVGGGVGF 11 Unmodified _QFLHVGGGVGF_ 0 0 0 REV__ENSG00000171806|ENST00000310392|METTL18 REV__ENSG00000171806|ENST00000310392|METTL18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.197819 1116.57163 -0.49022 -0.00018295 0.12112 4.5201E-05 -0.3691 -0.00013775 373.19769195398567 19.564 0.43079 19.592 19.325 19.756 0.028357 0 0 NaN 3.0723 98 41 3 NaN NaN NaN NaN 0 NaN NaN 0 2221600 + 49348 22603 33334 34096 0.018005650544409946 QFLPYCTQCL 10 Unmodified _QFLPYCTQCL_ 0 0 0 REV__ENST00000467960.1_1_6:108394960-108395921:-|nuORF REV__ENST00000467960.1_1_6:108394960-108395921:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2815551757812 2 608.280477 1214.5464 -0.15134 -9.206E-05 0.69968 0.0004256 0.54833 0.00033354 608.2810738018948 52.368 0.3308 52.368 52.199 52.53 0 52 14 5 0 0 0 0.47059 1 28924 28924 26.268 5.8536 1 16876000 + 49349 17682 33335 34097 57477 57477 -0.052289938546664416 QFLSHLLLF 9 Unmodified _QFLSHLLLF_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF;ENST00000585906.5_1_18:43437816-43497657:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3241577148438 2 559.32386 1116.63317 2.721 0.0015219 -1.4546 -0.00081359 1.2664 0.00070834 559.3229330638201 96.604 0.29738 96.597 96.475 96.772 -0.007019 16 10 2 0 0 0 0.042911 1 53661 53661 48.346 16.04 1 1596200 49350 6171 33336 34098 57478 57478 0.07951496753685205 QFLSRLFLF 9 Unmodified _QFLSRLFLF_ 0 0 0 nc|ENSG00000138942|Q96GF1-2|RNF185;ENSG00000138942|ENST00000326132|RNF185 nc|ENSG00000138942|Q96GF1-2|RNF185 nc|ENSG00000138942|Q96GF1-2|RNF185 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.839111328125 2 585.837134 1169.65972 4.3255 0.002534 -1.8829 -0.0011031 2.4426 0.001431 585.836195298938 98.733 0.16585 98.705 98.61 98.776 -0.028282 10 5 3 0 0 0 0.0088735 1 54845 54845 114.2 21.548 1 5898200 49351 5118 33337 34099 57479 57479 0.08167185645015707 QFLTDFYQL 9 Unmodified _QFLTDFYQL_ 0 0 0 REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.793701171875 2 587.792589 1173.57063 0.549 0.0003227 0.054879 3.2257E-05 0.60388 0.00035496 587.7924409231314 65.914 0.80914 59.738 59.236 60.045 -6.1757 67 47 2 0 0 0 0.19127 1 42957 42957 24.021 0 1 28768000 + 49352 20129 33338 34100 57480 57480 -0.009216941051363392 QFMVESFKF 9 Oxidation (M) _QFM(Oxidation (M))VESFKF_ QFM(1)VESFKF QFM(48)VESFKF 0 0 1 ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3 ENSG00000111231|ENST00000228827|GPN3 ENSG00000111231|ENST00000228827|GPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.781494140625 2 589.781167 1177.54778 0.49577 0.0002924 0.14206 8.3787E-05 0.63784 0.00037619 589.7813501889561 68.275 0.28835 68.3 68.148 68.436 0.025146 37 14 4 0 0 0 0.044296 1 37494 37494 47.594 26.057 1 7847000 49353 2769 33339 34101 57481 57481 482 -0.03389036494263564 QFMVESFKF 9 Unmodified _QFMVESFKF_ 0 0 0 ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3 ENSG00000111231|ENST00000228827|GPN3 ENSG00000111231|ENST00000228827|GPN3 MSMS AL20221201_MKP_PDAC_01 4 581.78369140625 2 581.78371 1161.55287 NaN NaN NaN NaN NaN NaN NaN 89.267 1 83.091 82.591 83.591 -6.1757 0 0 0 0.20097 1 58920 58920 32.786 12.332 1 49354 2769 33339 34102 57482 57482 -0.02144732631631996 QFNDNVGGKAI 11 Unmodified _QFNDNVGGKAI_ 0 0 0 REV__nc|ENSG00000137801|P07996-2|THBS1 REV__nc|ENSG00000137801|P07996-2|THBS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7964477539062 2 581.796195 1161.57784 NaN NaN NaN NaN NaN NaN NaN 63.885 1 63.885 63.385 64.385 0 0 0 0 0.93224 1 35629 35629 5.7319 0.97584 1 + + 49355 16865 33340 34103 57483 57483 0.0035103849529605213 QFNFLKFNV 9 Unmodified _QFNFLKFNV_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2094116210938 3 386.209836 1155.60768 1.0967 0.00042356 -0.63952 -0.00024699 0.45719 0.00017657 386.2093125382394 76.367 0.71947 70.191 69.58 70.299 -6.1757 56 39 2 0 0 0 0.39863 1 49978 49978 8.1555 0.54658 1 22917000 49356 1009 33341 34104 57484 57484 0.03610022231282528 QFNGPPDG 8 Unmodified _QFNGPPDG_ 0 0 0 REV__ENSG00000048342|ENST00000424120|CC2D2A REV__ENSG00000048342|ENST00000424120|CC2D2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1835327148438 2 416.185217 830.355882 0.0018066 7.519E-07 -1.3633 -0.00056739 -1.3615 -0.00056664 416.1842129573458 103.56 0.036575 103.56 103.55 103.58 0 23 12 3 0 0 0 0.80975 1 57086 57086 0.79363 0.10326 1 2004800 + 49357 17238 33342 34105 57485 57485 -0.06608196130230226 QFNGPPDG 8 Unmodified _QFNGPPDG_ 0 0 0 REV__ENSG00000048342|ENST00000424120|CC2D2A REV__ENSG00000048342|ENST00000424120|CC2D2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.1842956542969 2 416.185217 830.355882 0.32953 0.00013715 -1.3716 -0.00057084 -1.0421 -0.0004337 416.18449060766176 103.61 0.024811 103.5 103.48 103.51 -0.10458 15 9 2 0 0 0 0.80975 1 56512 56512 0.79363 0.10326 1 776980 + 49358 17238 33342 34105 57486 57486 -0.06608196130230226 QFNGPPDG 8 Unmodified _QFNGPPDG_ 0 0 0 REV__ENSG00000048342|ENST00000424120|CC2D2A REV__ENSG00000048342|ENST00000424120|CC2D2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 416.185217 830.355882 0.0018066 7.519E-07 -1.3633 -0.00056739 -1.3615 -0.00056664 416.1842129573458 103.56 0.036575 103.56 103.55 103.58 0 0.031054 3.0878E-06 NaN 0.79363 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2004800 + 49359 17238 33342 34105 -0.06608196130230226 QFNGPPDG 8 Unmodified _QFNGPPDG_ 0 0 0 REV__ENSG00000048342|ENST00000424120|CC2D2A REV__ENSG00000048342|ENST00000424120|CC2D2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 416.185217 830.355882 0.32953 0.00013715 -1.3716 -0.00057084 -1.0421 -0.0004337 416.18449060766176 103.61 0.024811 103.5 103.48 103.51 -0.10458 -0.031054 -3.8054E-06 NaN 0.79363 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 776980 + 49360 17238 33342 34105 -0.06608196130230226 QFPELMNMLW 10 Oxidation (M) _QFPELMNM(Oxidation (M))LW_ QFPELMNM(1)LW QFPELM(-33)NM(33)LW 0 0 1 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8072509765625 2 662.806859 1323.59917 0.47089 0.00031211 -1.3887 -0.00092043 -0.9178 -0.00060832 662.8065817362939 100.68 0.20472 94.503 94.431 94.635 -6.1757 30 14 3 0 0 0 4.814E-06 2 67391 67375;67391 129.77 102.89 2 51051000 49361 2954 33343 34106 57487;57488 57488 510;511 -0.04969035791873466 QFPELMNMLW 10 Unmodified _QFPELMNMLW_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8088989257812 2 654.809402 1307.60425 0.54672 0.000358 -0.72748 -0.00047636 -0.18077 -0.00011837 654.8090601258363 101.88 0.11308 95.7 95.644 95.757 -6.1757 16 5 4 0 0 0 0.013171 1 68378 68378 81.89 55.007 1 14816000 49362 2954 33343 34107 57489 57489 -0.03724731929264635 QFPELMNMLW 10 2 Oxidation (M) _QFPELM(Oxidation (M))NM(Oxidation (M))LW_ QFPELM(1)NM(1)LW QFPELM(72)NM(72)LW 0 0 2 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MSMS AL20221201_MKP_PDAC_01 4 670.8043823242188 2 670.804316 1339.59408 NaN NaN NaN NaN NaN NaN NaN 95.205 1 89.03 88.53 89.53 -6.1757 0 0 0 0.015821 1 63059 63059 71.922 49.186 1 49363 2954 33343 34108 57490 57490 510;511 -0.06213339654482297 QFQHQMREQ 9 Unmodified _QFQHQMREQ_ 0 0 0 REV__ENSG00000189233|ENST00000413272|NUGGC REV__ENSG00000189233|ENST00000413272|NUGGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.1937561035156 3 411.19274 1230.55639 -0.082385 -3.3876E-05 1.3792 0.00056712 1.2968 0.00053325 411.19311642171505 20.3 0.14494 20.311 20.208 20.353 0.010551 13 8 2 0 0 0 0.61381 1 10349 10349 0.23584 0 1 616940 + 49364 23771 33344 34109 57491 57491 -0.04966669805071433 QFQLRQSLWSL 11 Unmodified _QFQLRQSLWSL_ 0 0 0 REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 469.7750244140625 3 469.257738 1404.75138 0.89506 0.00042001 -3.1562 -0.0014811 -2.2611 -0.001061 469.2561340428282 40.701 0.2561 36.171 36.05 36.306 -4.5294 22 15 2 0 0 0 0.29891 1 24310 24310 6.2344 0.36622 1 7271400 + 49365 25999 33345 34110 57492 57492 0.06519824271572361 QFQLRQSLWSL 11 Unmodified _QFQLRQSLWSL_ 0 0 0 REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF REV__ENST00000367922.7_1_1:162625095-162688857:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 469.257738 1404.75138 -0.22366 -0.00010496 -2.427 -0.0011389 -2.6506 -0.0012438 469.5908591613562 35.942 0.23017 35.967 35.845 36.075 0.024971 -0.10215 0.00052447 NaN 9.2438 22 10 4 NaN NaN NaN NaN 0 NaN NaN 0 3032100 + 49366 25999 33345 34110 0.06519824271572361 QFQRRLDEIW 10 Unmodified _QFQRRLDEIW_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2457580566406 3 464.245721 1389.71533 0.86791 0.00040293 0.21546 0.00010003 1.0834 0.00050295 464.24579699347606 39.27 0.32263 34.819 34.675 34.997 -4.4509 45 19 3 0 0 0 0.69385 1 23282 23282 3.5871 0.26742 1 23013000 + 49367 18400 33346 34111 57493 57493 0.03606367094721463 QFRECAKWF 9 Unmodified _QFRECAKWF_ 0 0 0 REV__ENSG00000169220|ENST00000408923|RGS14 REV__ENSG00000169220|ENST00000408923|RGS14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.7933349609375 2 607.792401 1213.57025 NaN NaN NaN NaN NaN NaN NaN 71.823 1 71.347 70.847 71.847 -0.47609 0 0 0 0.84564 1 39306 39306 2.0598 0 1 + 49368 22386 33347 34112 57494 57494 -0.02799392305996662 QFRKKKRE 8 Unmodified _QFRKKKRE_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MSMS AL20221201_MKP_PDAC_01 4 560.3424682617188 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 107.06 1 100.88 100.38 101.38 -6.1757 0 0 0 0.97444 1 71629 71629 0.6015 0 1 49369 563 33348 34113 57495 57495 0.11267337965318802 QFRKKKRE 8 Unmodified _QFRKKKRE_ 0 0 0 nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 nc|ENSG00000026950|O00481-4|BTN3A1 MSMS AL20221201_MKP_PDAC_01 4 560.3434448242188 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 107.32 1 101.14 100.64 101.64 -6.1757 0 0 0 0.97444 1 71786 71786 0.69038 0 1 49370 563 33348 34113 57496 57496 0.11267337965318802 QFRREWCRYRW 11 Unmodified _QFRREWCRYRW_ 0 0 0 REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.4180908203125 2 843.415143 1684.81573 NaN NaN NaN NaN NaN NaN NaN 86.416 1 86.475 85.975 86.975 0.05822 0 0 0 0.9435 1 47974 47974 0 0 1 + 49371 25580 33349 34114 57497 57497 0.0007170087669692293 QFRSEMLSWI 10 Unmodified _QFRSEMLSWI_ 0 0 0 REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF REV__ENST00000523702.5_1_2:211438076-211442208:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8844604492188 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 23.951 1 21.124 20.624 21.624 -2.8273 0 0 0 0.98857 1 13000 13000 1.9064 0.1641 1 + 49372 28317 33350 34115 57498 57498 -0.002748713086020871 QFSVKCWLRY 10 Unmodified _QFSVKCWLRY_ 0 0 0 ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7692923-7693151:-|nuORF ENSG00000076924|ENST00000358368|XAB2 ENSG00000076924|ENST00000358368|XAB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3428955078125 2 665.342258 1328.66996 NaN NaN NaN NaN NaN NaN NaN 82.062 1 82.062 81.562 82.562 0 0 0 0 1.0024 1 45536 45536 0.40072 0 1 49373 1197 33351 34116 57499 57499 0.018774253079527625 QFTENHLQF 9 Unmodified _QFTENHLQF_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2761840820312 2 582.277638 1162.54072 0.11586 6.7465E-05 -0.6584 -0.00038337 -0.54253 -0.0003159 582.2772620590778 49.047 0.20022 49.047 48.952 49.152 0 22 9 3 0 0 0 0.0095811 1 26961 26961 81.613 41.656 1 3238000 49374 3241 33352 34117 57500 57500 -0.03404633050490702 QFTENHLQF 9 Unmodified _QFTENHLQF_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2774658203125 2 582.277638 1162.54072 0.58353 0.00033977 -0.3953 -0.00023017 0.18823 0.0001096 582.2774392540933 49.381 0.2593 48.988 48.839 49.098 -0.3923 27 12 3 0 0 0 0.013323 1 26524 26524 71.134 38.828 1 5535800 49375 3241 33352 34117 57501 57501 -0.03404633050490702 QFTENHLQF 9 Unmodified _QFTENHLQF_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2766723632812 2 582.277638 1162.54072 0.8012 0.00046652 -1.9003 -0.0011065 -1.0991 -0.00063996 582.277168853225 54.509 0.44788 48.644 48.401 48.848 -5.8653 55 27 3 0 0 0 0.0085164 2 34628 34582;34628 99.799 45.966 1 30799000 49376 3241 33352 34117 57502;57503 57503 -0.03404633050490702 QFTVDHISDM 10 Unmodified _QFTVDHISDM_ 0 0 0 REV__nc|ENSG00000005700|Q9P2D0-2|IBTK REV__nc|ENSG00000005700|Q9P2D0-2|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7659912109375 2 596.768788 1191.52302 0.168 0.00010026 -2.2441 -0.0013392 -2.0761 -0.001239 596.7673191406276 39.599 0.26845 39.611 39.447 39.716 0.011452 29 12 3 0 0 0 0.47059 1 21073 21073 20.415 0 1 3322100 + 49377 16973 33353 34118 57504 57504 -0.06507716367673311 QFTWRKRNYRR 11 Unmodified _QFTWRKRNYRR_ 0 0 0 REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.94287109375 2 805.942382 1609.87021 NaN NaN NaN NaN NaN NaN NaN 85.358 1 85.419 84.919 85.919 0.061638 0 0 0 0.94165 1 47252 47252 1.3295 1.0225 1 + 49378 27111 33354 34119 57505 57505 0.08967036019771513 QFVFEEIKW 9 Unmodified _QFVFEEIKW_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.826904296875 2 613.316232 1224.61791 NaN NaN NaN NaN NaN NaN NaN 64.545 1 64.545 64.045 65.045 0 0 0 0 0.58748 1 35998 35998 13.042 4.8869 1 49379 6860 33355 34120 57506 57506 0.014585851658466709 QFVKWIYI 8 Unmodified _QFVKWIYI_ 0 0 0 REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2121887207031 3 366.211177 1095.6117 NaN NaN NaN NaN NaN NaN NaN 16.242 1 16.242 15.742 16.742 0 0 0 0 0.97444 1 7901 7901 1.8442 0 1 + 49380 27745 33356 34121 57507 57507 0.06772111724990282 QFVPKSHLF 9 Unmodified _QFVPKSHLF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2063903808594 3 368.206315 1101.59712 0.10016 3.6878E-05 0.060445 2.2256E-05 0.1606 5.9134E-05 368.2063127269677 44.047 0.21453 44.025 43.878 44.092 -0.022068 23 14 2 0 0 0 0.069655 1 23587 23587 40.239 18.702 1 37103000 49381 894 33357 34122 57508 57508 0.05038039576857045 QFVPKSHLF 9 Unmodified _QFVPKSHLF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2069091796875 3 368.206315 1101.59712 1.4995 0.00055213 -0.35891 -0.00013215 1.1406 0.00041997 368.2062336415705 49.315 0.32325 43.919 43.745 44.068 -5.3961 42 20 3 0 0 0 0.51371 2 30733 30733;30858 6.6304 6.6304 1 70139000 49382 894 33357 34122 57509;57510 57509 0.05038039576857045 QFVPKSHLF 9 Unmodified _QFVPKSHLF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8068237304688 2 551.805834 1101.59712 0.86686 0.00047834 -0.85787 -0.00047338 0.0089893 4.9604E-06 551.8056102163985 49.351 0.29155 43.955 43.745 44.036 -5.3961 27 18 2 0 0 0 0.033747 1 30806 30806 66.457 50.609 1 42491000 49383 894 33357 34122 57511 57511 0.05038039576857045 QFVPKSHLF 9 Unmodified _QFVPKSHLF_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 368.206315 1101.59712 1.4995 0.00055213 -0.35891 -0.00013215 1.1406 0.00041997 368.2062336415705 49.315 0.32325 43.919 43.745 44.068 -5.3961 -0.053087 -0.00021985 NaN 40.239 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 70139000 49384 894 33357 34122 0.05038039576857045 QFVTQGNRVF 10 Unmodified _QFVTQGNRVF_ 0 0 0 REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3154907226562 2 598.314554 1194.61456 0.42334 0.00025329 0.25913 0.00015504 0.68247 0.00040833 598.31487120054 58.659 0.19468 58.598 58.505 58.7 -0.060719 17 9 2 0 0 0 0.46514 1 31982 31982 18.146 8.7632 1 2988300 + 49385 29405 33358 34123 57512 57512 0.025033351118281644 QFVTQGNRVF 10 Unmodified _QFVTQGNRVF_ 0 0 0 REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 598.314554 1194.61456 0.42334 0.00025329 0.25913 0.00015504 0.68247 0.00040833 598.31487120054 58.659 0.19468 58.598 58.505 58.7 -0.060719 0.038673 -0.00031255 NaN 18.146 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2988300 + 49386 29405 33358 34123 0.025033351118281644 QFVYACTP 8 Unmodified _QFVYACTP_ 0 0 0 REV__ENSG00000129925|ENST00000431232|PGAP6 REV__ENSG00000129925|ENST00000431232|PGAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.422607421875 1 928.423316 927.416039 0.62681 0.00058194 -1.7914 -0.0016632 -1.1646 -0.0010813 928.421409363188 57.616 0.18699 57.616 57.585 57.772 0 13 9 2 0 0 0 0.55032 1 32085 32085 30.225 3.8835 1 2030500 + 49387 19688 33359 34124 57513 57513 -0.05057221791378197 QFWFQRLWEFE 11 Unmodified _QFWFQRLWEFE_ 0 0 0 REV__ENSG00000140718|ENST00000471389|FTO REV__ENSG00000140718|ENST00000471389|FTO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.5939331054688 3 539.261259 1614.76195 -0.69451 -0.00037452 -0.45227 -0.00024389 -1.1468 -0.00061841 539.2610464915557 18.141 0.17905 18.155 18.075 18.254 0.013865 71 29 4 0 0 0 0.7453 1 9045 9045 0 0 1 2846400 + 49388 20490 33360 34125 57514 57514 -0.020841930740061798 QFWFQRLWEFE 11 Unmodified _QFWFQRLWEFE_ 0 0 0 REV__ENSG00000140718|ENST00000471389|FTO REV__ENSG00000140718|ENST00000471389|FTO MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 539.261259 1614.76195 -0.69451 -0.00037452 -0.45227 -0.00024389 -1.1468 -0.00061841 539.2610464915557 18.141 0.17905 18.155 18.075 18.254 0.013865 0 0 NaN 0 71 29 4 NaN NaN NaN NaN 0 NaN NaN 0 2846400 + 49389 20490 33360 34125 -0.020841930740061798 QFWSAHQRF 9 Unmodified _QFWSAHQRF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF;nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;nc|ENSG00000139697|A3KN83-4|SBNO1 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;nc|ENSG00000139697|A3KN83-3|SBNO1 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.8653564453125 3 402.864952 1205.57303 0.15907 6.4085E-05 0.75513 0.00030421 0.9142 0.0003683 402.86520393248657 39.942 0.2352 39.947 39.791 40.026 0.0050545 17 10 2 0 0 0 0.37578 1 21295 21295 13.615 6.9914 1 2383600 49390 887;5180 33361 34126 57515 57515 -0.02153800856831367 QFYFLWDRKMY 11 Unmodified _QFYFLWDRKMY_ 0 0 0 REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1 REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1 MSMS AL20221201_MKP_PDAC_01 4 532.9277954101562 3 532.927112 1595.75951 NaN NaN NaN NaN NaN NaN NaN 40.695 1 36.165 35.665 36.665 -4.5294 0 0 0 0.9428 1 24335 24335 0.50596 0 1 + 49391 29816 33362 34127 57516 57516 -0.014543648033395584 QGADRLRPA 9 Unmodified _QGADRLRPA_ 0 0 0 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2725524902344 2 492.27269 982.530826 -0.50841 -0.00025028 0.81463 0.00040102 0.30622 0.00015074 492.2731061918919 16.185 0.15018 16.185 16.064 16.215 0 50 34 2 0 0 0 0.55144 1 7826 7826 4.3292 0 1 642320 + 49392 20100 33363 34128 57517 57517 0.038862237347984774 QGADRLRPA 9 Unmodified _QGADRLRPA_ 0 0 0 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 REV__nc|ENSG00000135835|Q5VZ46-2|KIAA1614 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 492.27269 982.530826 -0.50841 -0.00025028 0.81463 0.00040102 0.30622 0.00015074 492.2731061918919 16.185 0.15018 16.185 16.064 16.215 0 0 0 NaN 4.3292 50 34 2 NaN NaN NaN NaN 0 NaN NaN 0 642320 + 49393 20100 33363 34128 0.038862237347984774 QGALGRSK 8 Unmodified _QGALGRSK_ 0 0 0 MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|9|2|sense MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|9|2|sense MLT1B_dup948|chr1:201401334-201401734:-|1.2803295292444992|0.1940662173317227|2.72|178.0|9|2|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 818.4746704101562 1 816.468626 815.46135 1.3694 0.0011181 0.045627 3.7253E-05 1.415 0.0011553 816.4686791427217 102.52 0.077644 96.34 96.296 96.373 -6.1757 19 10 3 0 0 0 0.80763 1 68802 68802 2.0598 0.21551 1 8851300 49394 15995 33364 34129 57518 57518 0.04623764786049378 QGALREQL 8 Unmodified _QGALREQL_ 0 0 0 ENST00000266746.10_1_12:100561203-100566904:-|nuORF;GOLGA2|p.W514Lfs*38|1|0.09|ENSG00000167110|chr9:128260601-128260602|-/A|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2 ENST00000266746.10_1_12:100561203-100566904:-|nuORF ENST00000266746.10_1_12:100561203-100566904:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7567749023438 2 457.756341 913.498129 -0.052198 -2.3894E-05 1.1919 0.00054559 1.1397 0.0005217 457.7569012052753 25.433 0.60315 22.55 22.322 22.925 -2.8831 69 33 3 0 0 0 0.21583 2 13857 13857;13966 67.344 9.1255 1 25446000 49395 7573 33365 34130 57519;57520 57519 0.03792016611953386 QGANPYLFI 9 Unmodified _QGANPYLFI_ 0 0 0 REV__ENSG00000027001|ENST00000382172|MIPEP REV__ENSG00000027001|ENST00000382172|MIPEP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7695922851562 2 511.768917 1021.52328 NaN NaN NaN NaN NaN NaN NaN 52.672 1 52.613 52.113 53.113 -0.058918 0 0 0 0.50124 1 28540 28540 15.847 2.3393 1 + 49396 17131 33366 34131 57521 57521 0.013380714145000638 QGAVGPKV 8 Unmodified _QGAVGPKV_ 0 0 0 nc|ENSG00000151651|P78325-2|ADAM8 nc|ENSG00000151651|P78325-2|ADAM8 nc|ENSG00000151651|P78325-2|ADAM8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.224609375 2 378.224146 754.433738 NaN NaN NaN NaN NaN NaN NaN 103.05 1 103 102.5 103.5 -0.047928 0 0 0 0.97444 1 57227 57227 0.69038 0 1 49397 16274 33367 34132 57522 57522 0.046698615258037535 QGAVPNTW 8 Unmodified _QGAVPNTW_ 0 0 0 ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENST00000562938.5_1_15:78207528-78213944:-|nuORF ENST00000562938.5_1_15:78207528-78213944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.4259643554688 1 872.426093 871.418816 0.46741 0.00040778 0.0077997 6.8047E-06 0.4752 0.00041458 872.4261764822447 42.369 0.22845 42.369 42.26 42.488 0 15 10 2 0 0 0 0.27285 1 22923 22923 58.679 12.658 1 895670 49398 15348 33368 34133 57523 57523 -0.022036303421828052 QGCCSFKCL 9 Unmodified _QGCCSFKCL_ 0 0 0 ENST00000566466.1_1_16:68403009-68404965:-|nuORF;ENST00000566009.5_1_16:68398402-68404929:-|nuORF;ENST00000567811.1_1_16:68398525-68404929:-|nuORF;nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3 ENST00000566466.1_1_16:68403009-68404965:-|nuORF ENST00000566466.1_1_16:68403009-68404965:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7066040039062 2 494.706091 987.397629 0.33025 0.00016338 1.2772 0.00063186 1.6075 0.00079523 494.70666559006685 58.063 0.73454 58.063 57.754 58.489 0 63 29 3 0 0 0 0.54444 1 32539 32539 4.756 0.42677 1 5283600 49399 2098 33369 34134 57524 57524 -0.0965742302922763 QGDKIEPTF 9 Unmodified _QGDKIEPTF_ 0 0 0 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 REV__nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7637329101562 2 517.761289 1033.50803 NaN NaN NaN NaN NaN NaN NaN 69.362 1 68.883 68.383 69.383 -0.47903 0 0 0 0.82739 1 37917 37917 4.3292 0 1 + 49400 19548 33370 34135 57525 57525 -0.007388401733351202 QGDRMELTI 9 Unmodified _QGDRMELTI_ 0 0 0 REV__nc|ENSG00000078900|O15350-10|TP73 REV__nc|ENSG00000078900|O15350-10|TP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7658081054688 2 531.766049 1061.51754 0.017827 9.4796E-06 1.0892 0.00057917 1.107 0.00058865 531.7665723385192 66.043 0.44566 65.56 65.361 65.807 -0.48323 65 22 4 0 0 0 0.06294 1 35997 35997 41.84 0 1 40133000 + 49401 29511 33371 34136 57526 57526 -0.010753951594551836 QGDRMELTI 9 Unmodified _QGDRMELTI_ 0 0 0 REV__nc|ENSG00000078900|O15350-10|TP73 REV__nc|ENSG00000078900|O15350-10|TP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7667846679688 2 531.766049 1061.51754 0.79207 0.0004212 0.87638 0.00046603 1.6684 0.00088722 531.7662922733856 65.61 0.30733 65.61 65.431 65.738 7.6294E-06 28 14 3 0 0 0 0.06294 1 35951 35951 41.84 0 1 5972800 + 49402 29511 33371 34136 57527 57527 -0.010753951594551836 QGDRMELTI 9 Unmodified _QGDRMELTI_ 0 0 0 REV__nc|ENSG00000078900|O15350-10|TP73 REV__nc|ENSG00000078900|O15350-10|TP73 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7675170898438 2 531.766049 1061.51754 0.48791 0.00025945 0.47777 0.00025406 0.96568 0.00051352 531.7664062742131 76.574 1.8414 70.398 69.521 71.362 -6.1757 154 101 2 0 0 0 0.039985 5 50204 49824;49944;50074;50204;50436 49.933 7.8384 1 24706000 + 49403 29511 33371 34136 57528;57529;57530;57531;57532 57531 -0.010753951594551836 QGEHFNFQY 9 Unmodified _QGEHFNFQY_ 0 0 0 REV__ENSG00000140511|ENST00000359595|HAPLN3 REV__ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2537231445312 2 585.254163 1168.49377 0.49023 0.00028691 -2.8347 -0.001659 -2.3445 -0.0013721 585.2528655630406 53.85 0.34637 53.85 53.665 54.011 0 24 15 2 0 0 0 0.34999 1 29900 29900 14.838 2.5976 1 4095300 + 49404 20478 33372 34137 57533 57533 -0.08373492601617727 QGEHFNFQY 9 Unmodified _QGEHFNFQY_ 0 0 0 REV__ENSG00000140511|ENST00000359595|HAPLN3 REV__ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 585.254163 1168.49377 0.49023 0.00028691 -2.8347 -0.001659 -2.3445 -0.0013721 585.2528655630406 53.85 0.34637 53.85 53.665 54.011 0 0 0 NaN 14.838 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 4095300 + 49405 20478 33372 34137 -0.08373492601617727 QGEHGFLVTF 10 Unmodified _QGEHGFLVTF_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.783447265625 2 567.782556 1133.55056 0.44671 0.00025363 1.3143 0.00074621 1.761 0.00099984 567.7835381103481 66.864 0.22943 66.381 66.273 66.503 -0.48323 16 10 2 0 0 0 0.5933 1 36542 36542 11.495 1.4208 1 694680 + 49406 18862 33373 34138 57534 57534 -0.01087445045095592 QGEHGFLVTF 10 Unmodified _QGEHGFLVTF_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8306274414062 2 567.782556 1133.55056 0.44671 0.00025363 1.3143 0.00074621 1.761 0.00099984 567.7835381103481 66.864 0.22943 66.381 66.273 66.503 -0.48323 16 10 2 0 0 0 0.2362 1 36554 36554 7.609 1.8485 1 694680 + 49407 18862 33373 34138 57535 57535 -0.01087445045095592 QGEHGFLVTF 10 Unmodified _QGEHGFLVTF_ 0 0 0 REV__ENSG00000113319|ENST00000265080|RASGRF2 REV__ENSG00000113319|ENST00000265080|RASGRF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.782556 1133.55056 0.94015 0.0005338 0.60074 0.00034109 1.5409 0.00087489 567.7826774053319 66.741 0.29165 66.751 66.684 66.976 0.0095596 0.18501 -0.00013128 NaN 11.495 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1867800 + 49408 18862 33373 34138 -0.01087445045095592 QGELLDCDED 10 Unmodified _QGELLDCDED_ 0 0 0 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 REV__nc|ENSG00000157181|Q5SWX8-3|ODR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7243041992188 2 568.724243 1135.43393 NaN NaN NaN NaN NaN NaN NaN 59.884 1 59.884 59.384 60.384 0 0 0 0 0.88176 1 33385 33385 8.7454 2.0222 1 + 49409 21368 33374 34139 57536 57536 -0.12836596117836052 QGELTVGP 8 Unmodified _QGELTVGP_ 0 0 0 ENST00000530439.1_2_11:10327370-10327646:+|nuORF ENST00000530439.1_2_11:10327370-10327646:+|nuORF ENST00000530439.1_2_11:10327370-10327646:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.4133911132812 1 800.414859 799.407583 0.31292 0.00025047 -0.53982 -0.00043208 -0.2269 -0.00018162 800.4149068831948 38.916 0.41716 38.916 38.66 39.077 0 28 18 2 0 0 0 0.77907 1 20764 20764 10.183 0 1 3417000 49410 14890 33375 34140 57537 57537 -0.00014452436334977392 QGEPFQGVDF 10 Unmodified _QGEPFQGVDF_ 0 0 0 ENST00000330539.1_1_8:37593400-37593877:-|nuORF ENST00000330539.1_1_8:37593400-37593877:-|nuORF ENST00000330539.1_1_8:37593400-37593877:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.759521484375 2 562.256371 1122.49819 0.84009 0.00047235 1.4782 0.00083115 2.3183 0.0013035 562.7585038807866 82.133 0.28357 81.637 81.415 81.698 -0.4952 16 10 2 0 0 0 0.64628 1 44975 44975 8.7454 1.4562 1 398920 49411 11850 33376 34141 57538 57538 -0.058160281787195345 QGFEETGDTLY 11 Unmodified _QGFEETGDTLY_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.27294921875 2 630.274958 1258.53536 0.74713 0.0004709 -1.0853 -0.00068402 -0.33815 -0.00021313 630.2743228892971 51.191 0.28115 51.191 51.067 51.348 0 34 12 4 0 0 0 9.0972E-05 1 28221 28221 93.166 62.529 1 10899000 49412 481 33377 34142 57539 57539 -0.08356401423588977 QGFEETGDTLY 11 Unmodified _QGFEETGDTLY_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.2754516601562 2 630.274958 1258.53536 0.69586 0.00043858 0.025525 1.6088E-05 0.72138 0.00045467 630.2748549382464 59.66 0.26254 53.546 53.357 53.62 -6.1147 24 13 2 0 0 0 1.1447E-06 1 38261 38261 103.82 61.984 1 24859000 49413 481 33377 34142 57540 57540 -0.08356401423588977 QGFIQDRAGR 10 Unmodified _QGFIQDRAGR_ 0 0 0 nc|ENSG00000087088|Q07812-5|BAX;nc|ENSG00000087088|Q07812-7|BAX;nc|ENSG00000087088|Q07812-8|BAX;ENSG00000087088|ENST00000345358|BAX;nc|ENSG00000087088|Q07812-2|BAX nc|ENSG00000087088|Q07812-5|BAX nc|ENSG00000087088|Q07812-5|BAX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1797180175781 3 383.203744 1146.5894 NaN NaN NaN NaN NaN NaN NaN 82.997 1 82.499 81.999 82.999 -0.49751 0 0 0 0.92825 1 45434 45434 3.5871 0 1 49414 1452 33378 34143 57541 57541 0.021972803092467075 QGFLQVMVAA 10 Unmodified _QGFLQVMVAA_ 0 0 0 chr1:155186209-155186836|53|283.3|0.0|24.76|-|1|MUC1,None|1 chr1:155186209-155186836|53|283.3|0.0|24.76|-|1|MUC1,None|1 chr1:155186209-155186836|53|283.3|0.0|24.76|-|1|MUC1,None|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2863159179688 2 532.283877 1062.5532 -0.39223 -0.00020878 1.165 0.00062012 0.77279 0.00041134 532.7843218586772 56.234 0.38248 56.165 55.904 56.287 -0.068737 43 19 3 0 0 0 0.27276 1 30610 30610 29.082 2.1979 1 7651900 49415 64 33379 34144 57542 57542 0.024426870882052754 QGFPDELAF 9 Unmodified _QGFPDELAF_ 0 0 0 ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2 ENSG00000090924|ENST00000425673|PLEKHG2 ENSG00000090924|ENST00000425673|PLEKHG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2432861328125 2 512.242732 1022.47091 0.26818 0.00013737 0.88279 0.0004522 1.151 0.00058958 512.243185445412 79.546 0.51519 79.546 79.303 79.819 0 33 21 3 0 0 0 0.30562 2 44216 44119;44216 16.942 9.0321 1 778320 49416 1573 33380 34145 57543;57544 57544 -0.039425117191058234 QGFPDELAF 9 Unmodified _QGFPDELAF_ 0 0 0 ENSG00000090924|ENST00000425673|PLEKHG2;nc|ENSG00000090924|Q9H7P9-3|PLEKHG2 ENSG00000090924|ENST00000425673|PLEKHG2 ENSG00000090924|ENST00000425673|PLEKHG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.242732 1022.47091 0.8038 0.00041174 2.8414 0.0014555 3.6452 0.0018673 512.2446774583061 80.118 0.26029 79.628 79.428 79.689 -0.48932 0.041148 0.0019331 NaN 16.942 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 409480 49417 1573 33380 34145 -0.039425117191058234 QGFPNRVVF 9 Unmodified _QGFPNRVVF_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MSMS AL20221201_MKP_PDAC_01 4 532.2903442382812 2 532.287808 1062.56106 NaN NaN NaN NaN NaN NaN NaN 61.681 1 55.506 55.006 56.006 -6.1757 0 0 0 0.014983 1 39745 39745 85.272 45.315 1 49418 1800 33381 34146 57545 57545 0.03228582399970037 QGFTLQPDY 9 Unmodified _QGFTLQPDY_ 0 0 0 ENSG00000198846|ENST00000361421|TOX ENSG00000198846|ENST00000361421|TOX ENSG00000198846|ENST00000361421|TOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.754150390625 2 534.753464 1067.49238 0.57921 0.00030973 -0.86349 -0.00046175 -0.28428 -0.00015202 534.7533493506838 43.1 0.4311 43.1 42.928 43.359 0 47 21 3 0 0 0 0.25681 1 23361 23361 19.257 1.1106 1 22774000 49419 10173 33382 34147 57546 57546 -0.03867126690374789 QGFTLQPDY 9 Unmodified _QGFTLQPDY_ 0 0 0 ENSG00000198846|ENST00000361421|TOX ENSG00000198846|ENST00000361421|TOX ENSG00000198846|ENST00000361421|TOX MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 534.753464 1067.49238 0.95948 0.00051309 -0.72034 -0.0003852 0.23914 0.00012788 534.7528270629141 48.517 0.23024 43.12 43.01 43.24 -5.3961 0.010261 0.00011122 NaN 19.257 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 11818000 49420 10173 33382 34147 -0.03867126690374789 QGFTQHSQW 9 Unmodified _QGFTQHSQW_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7544555664062 2 559.75433 1117.49411 -0.46307 -0.0002592 1.0851 0.00060741 0.62206 0.0003482 559.7544998172647 33.005 0.23841 33.005 32.87 33.109 0 21 11 3 0 0 0 0.42049 1 17278 17278 11.495 0.67078 1 1440500 49421 5414 33383 34148 57547 57547 -0.059940728817764466 QGFYTSKDF 9 Unmodified _QGFYTSKDF_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MSMS AL20221201_MKP_PDAC_01 4 546.7525024414062 2 546.753464 1091.49238 NaN NaN NaN NaN NaN NaN NaN 46.82 1 41.739 41.239 42.239 -5.0805 0 0 0 0.34649 1 28987 28987 22.736 5.794 1 49422 9678 33384 34149 57548 57548 -0.04971126690384153 QGGGRLAL 8 Unmodified _QGGGRLAL_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MSMS AL20221201_MKP_PDAC_01 4 386.2278747558594 2 386.22722 770.439886 NaN NaN NaN NaN NaN NaN NaN 27.982 1 24.834 24.334 25.334 -3.1482 0 0 0 0.25484 1 15556 15556 74.396 16.925 1 + 49423 24651 33385 34150 57549 57549 0.04548379757306975 QGGPHFLCL 9 Unmodified _QGGPHFLCL_ 0 0 0 REV__ENST00000415574.6_1_2:132258965-132266117:+|nuORF REV__ENST00000415574.6_1_2:132258965-132266117:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2442626953125 2 486.242012 970.469472 NaN NaN NaN NaN NaN NaN NaN 59.657 1 59.657 59.157 60.157 0 0 0 0 0.36554 1 33248 33248 21.747 4.6601 1 + 49424 26757 33386 34151 57550 57550 -0.016944242888598637 QGGRLPAP 8 Unmodified _QGGRLPAP_ 0 0 0 REV__ENST00000309100.7_1_11:65380814-65380982:-|nuORF REV__ENST00000309100.7_1_11:65380814-65380982:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2281188964844 2 398.22722 794.439886 NaN NaN NaN NaN NaN NaN NaN 18.509 1 18.515 18.015 19.015 0.0060463 0 0 0 0.97444 1 9383 9383 5.2307 0 1 + 49425 25404 33387 34152 57551 57551 0.03444379757320348 QGIPVYLFS 9 Unmodified _QGIPVYLFS_ 0 0 0 ENSG00000169299|ENST00000381967|PGM2 ENSG00000169299|ENST00000381967|PGM2 ENSG00000169299|ENST00000381967|PGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2792358398438 2 512.279118 1022.54368 0.8116 0.00041577 -0.51375 -0.00026318 0.29785 0.00015258 512.2788551464314 79.561 0.50024 79.071 78.796 79.296 -0.48933 37 21 2 0 0 0 0.23158 1 43529 43529 20.454 1.0146 1 4545600 49426 7862 33388 34153 57552 57552 0.03331242074318652 QGKAILWL 8 Unmodified _QGKAILWL_ 0 0 0 ENST00000264431.8_1_4:160271366-160274004:+|nuORF ENST00000264431.8_1_4:160271366-160274004:+|nuORF ENST00000264431.8_1_4:160271366-160274004:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2456970214844 2 464.78437 927.554188 0.12146 5.6453E-05 0.50134 0.00023302 0.6228 0.00028947 464.78462644363066 34.613 0.19296 34.64 34.52 34.713 0.027401 18 8 3 0 0 0 8.7369 1 18282 18282 9.3474 7.0447 1 5569400 49427 11312 33389 34154 57553 57553 0.08751269519416383 QGKAILWL 8 Unmodified _QGKAILWL_ 0 0 0 ENST00000264431.8_1_4:160271366-160274004:+|nuORF ENST00000264431.8_1_4:160271366-160274004:+|nuORF ENST00000264431.8_1_4:160271366-160274004:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 464.2457580566406 2 464.78437 927.554188 0.85563 0.00039768 0.25787 0.00011985 1.1135 0.00051753 464.7843360914815 39.141 0.38785 34.69 34.488 34.876 -4.4509 60 24 3 0 0 0 8.7369 1 23282 23282 5.2307 0 1 31119000 49428 11312 33389 34154 57554 57554 0.08751269519416383 QGKTKREH 8 Unmodified _QGKTKREH_ 0 0 0 REV__ENST00000503528.1_1_4:36335268-36335424:+|nuORF REV__ENST00000503528.1_1_4:36335268-36335424:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2723999023438 2 492.27269 982.530826 NaN NaN NaN NaN NaN NaN NaN 16.285 1 16.285 15.785 16.785 0 0 0 0 0.97444 1 7926 7926 2.5775 0 1 + 49429 28039 33390 34155 57555 57555 0.03886223734787109 QGLAFLAAN 9 Unmodified _QGLAFLAAN_ 0 0 0 REV__ENSG00000196497|ENST00000354464|IPO4 REV__ENSG00000196497|ENST00000354464|IPO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7498779296875 2 452.747985 903.481417 1.3284 0.00060141 0.26572 0.00012031 1.5941 0.00072172 452.74807437171654 35.771 0.48561 31.578 31.351 31.837 -4.1928 89 30 4 0 0 0 0.15471 1 20706 20706 27.629 1.2875 1 77483000 + 49430 23834 33391 34156 57556 57556 0.025815157259785337 QGLELAQSL 9 Unmodified _QGLELAQSL_ 0 0 0 REV__ENST00000330843.8_1_8:37728035-37728973:-|nuORF REV__ENST00000330843.8_1_8:37728035-37728973:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7642822265625 2 479.763832 957.513111 0.81595 0.00039146 0.43413 0.00020828 1.2501 0.00059974 479.76400237598835 75.613 0.2673 75.136 74.945 75.212 -0.47713 20 14 2 0 0 0 0.30562 1 41409 41409 16.942 0 1 1007700 + 49431 25597 33392 34157 57557 57557 0.032654636892857525 QGLELAREL 9 Unmodified _QGLELAREL_ 0 0 0 ENSG00000123999|ENST00000243786|INHA ENSG00000123999|ENST00000243786|INHA ENSG00000123999|ENST00000243786|INHA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2484741210938 2 514.790381 1027.56621 0.66023 0.00033988 -2.1505 -0.0011071 -1.4903 -0.00076719 514.7900511309572 53.925 0.1913 53.925 53.82 54.011 0 15 8 2 0 0 0 0.18811 1 29878 29878 17.113 0 1 2133800 49432 3741 33393 34158 57558 57558 0.05352841471949432 QGLGQALVQF 10 Unmodified _QGLGQALVQF_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12;ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENSG00000244462|ENST00000374114|RBM12;ENST00000317677.9_1_20:34220804-34241573:-|nuORF ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.792724609375 2 530.792924 1059.57129 0.72356 0.00038406 0.44849 0.00023806 1.172 0.00062211 530.7929840294711 46.512 0.19477 46.512 46.412 46.607 0 13 8 2 0 0 0 0.54684 1 25448 25448 13.906 0.86358 1 1206700 49433 10730;11748 33394 34159 57559 57559 0.04389145334562272 QGLLQLTGF 9 Unmodified _QGLLQLTGF_ 0 0 0 ENST00000292566.3_1_7:102097735-102097831:-|nuORF ENST00000292566.3_1_7:102097735-102097831:-|nuORF ENST00000292566.3_1_7:102097735-102097831:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7764587402344 2 488.776742 975.538931 NaN NaN NaN NaN NaN NaN NaN 79.629 1 79.14 78.64 79.64 -0.48932 0 0 0 0.46757 1 43617 43617 16.942 0 1 49434 11474 33395 34160 57560 57560 0.05018357931567152 QGMNFFLAEH 10 Unmodified _QGMNFFLAEH_ 0 0 0 REV__ENSG00000137124|ENST00000377698|ALDH1B1 REV__ENSG00000137124|ENST00000377698|ALDH1B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.51708984375 3 398.518453 1192.53353 NaN NaN NaN NaN NaN NaN NaN 19.159 1 19.182 18.682 19.682 0.023106 0 0 0 0.99008 1 9647 9647 1.7423 0 1 + 49435 20215 33396 34161 57561 57561 -0.05503688922567562 QGNDDNDQ 8 Unmodified _QGNDDNDQ_ 0 0 0 ENST00000578240.1_1_17:8133610-8135926:-|nuORF;nc|ENSG00000178971|Q2NKJ3-2|CTC1;ENSG00000178971|ENST00000651323|CTC1 ENST00000578240.1_1_17:8133610-8135926:-|nuORF ENST00000578240.1_1_17:8133610-8135926:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 453.5829162597656 2 453.16521 904.315867 0.83772 0.00037962 -2.3583 -0.0010687 -1.5206 -0.00068906 453.1645807054811 43.028 0.15421 38.265 38.181 38.335 -4.7637 11 9 2 0 0 0 8.7369 1 26102 26102 2.5775 0 1 4103500 49436 8790 33397 34162 57562 57562 -0.14011787591471148 QGNRVFSF 8 Unmodified _QGNRVFSF_ 0 0 0 REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense REV__L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|35|1|anti-sense MSMS AL20221201_MKP_PDAC_01 4 477.7449340820312 2 477.743234 953.471915 NaN NaN NaN NaN NaN NaN NaN 84.273 1 78.097 77.597 78.597 -6.1757 0 0 0 0.93066 1 55431 55431 14.582 2.0501 1 + 49437 29405 33398 34163 57563 57563 -0.006682525595238076 QGPGGRRL 8 Unmodified _QGPGGRRL_ 0 0 0 REV__ENST00000389915.3_1_2:131840226-131851016:-|nuORF REV__ENST00000389915.3_1_2:131840226-131851016:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 420.219970703125 2 420.743568 839.472583 1.5151 0.00063746 -0.79493 -0.00033446 0.72015 0.000303 420.7432703546335 21.478 0.29746 18.743 18.603 18.9 -2.7348 57 28 3 0 0 0 8.7369 1 11579 11579 5.2307 0 1 10531000 + 49438 26364 33399 34164 57564 57564 0.04642586880174804 QGPGPWGF 8 Unmodified _QGPGPWGF_ 0 0 0 ENST00000477757.5_1_10:97028616-97050708:-|nuORF;ENSG00000107438|ENST00000329399|PDLIM1 ENST00000477757.5_1_10:97028616-97050708:-|nuORF ENST00000477757.5_1_10:97028616-97050708:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 423.2005004882812 2 423.20067 844.386788 NaN NaN NaN NaN NaN NaN NaN 83.137 1 76.962 76.462 77.462 -6.1757 0 0 0 0.97444 1 54657 54657 2.8892 0 1 49439 2495 33400 34165 57565 57565 -0.04162998025333309 QGPLTKTKGI 10 Unmodified _QGPLTKTKGI_ 0 0 0 ENSG00000162396|ENST00000371279|PARS2 ENSG00000162396|ENST00000371279|PARS2 ENSG00000162396|ENST00000371279|PARS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2723999023438 2 521.816399 1041.61824 0.76443 0.00039889 -1.6454 -0.00085859 -0.88096 -0.0004597 521.8160338533194 50.58 0.1662 50.166 50.112 50.278 -0.41351 10 7 2 0 0 0 0.23693 1 27287 27287 6.2058 0.97511 1 1381400 49440 6853 33401 34166 57566 57566 0.09910004885728085 QGPSIQSPRT 10 Unmodified _QGPSIQSPRT_ 0 0 0 REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.782958984375 2 535.783087 1069.55162 NaN NaN NaN NaN NaN NaN NaN 35.59 1 35.368 34.868 35.868 -0.2224 0 0 0 0.68942 1 18643 18643 17.113 1.2657 1 + 49441 28267 33402 34167 57567 57567 0.01962769323813518 QGPYKINAL 9 Unmodified _QGPYKINAL_ 0 0 0 REV__nc|ENSG00000131686|P23280-3|CA6 REV__nc|ENSG00000131686|P23280-3|CA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2830200195312 2 502.282192 1002.54983 -0.044391 -2.2297E-05 1.0713 0.0005381 1.0269 0.0005158 502.2827587825599 54.139 0.30175 54.072 53.941 54.243 -0.066936 31 14 3 0 0 0 0.49272 1 29482 29482 7.9102 0 1 5628600 + 49442 19804 33403 34168 57568 57568 0.048657603058586574 QGQDCGHTY 9 Unmodified _QGQDCGHTY_ 0 0 0 ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.6962280273438 2 504.695623 1007.37669 0.29969 0.00015125 0.81545 0.00041156 1.1151 0.00056281 504.69600872462246 42.047 0.27819 42.047 41.901 42.179 0 36 14 3 0 0 0 0.54444 1 22735 22735 4.756 1.8668 1 19271000 49443 7244 33404 34169 57569 57569 -0.12669973812887747 QGQDCGHTY 9 Unmodified _QGQDCGHTY_ 0 0 0 ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.6967468261719 2 504.695623 1007.37669 0.88808 0.00044821 0.88934 0.00044885 1.7774 0.00089706 504.6957555344441 49.287 0.29009 43.89 43.809 44.099 -5.3961 24 17 2 0 0 0 0.54444 1 30775 30775 4.756 0 1 31116000 49444 7244 33404 34169 57570 57570 -0.12669973812887747 QGQDCGHTY 9 Unmodified _QGQDCGHTY_ 0 0 0 ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON ENSG00000164764|ENST00000297354|SBSPON MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.695623 1007.37669 0.29969 0.00015125 0.81545 0.00041156 1.1151 0.00056281 504.69600872462246 42.047 0.27819 42.047 41.901 42.179 0 0 0 NaN 4.756 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 19271000 49445 7244 33404 34169 -0.12669973812887747 QGQLHDRCL 9 Unmodified _QGQLHDRCL_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;ENST00000462762.1_1_1:233120052-233121280:-|nuORF;ENST00000344698.6_2_1:233120052-233120277:-|nuORF;nc|ENSG00000135749|A6NKB5-4|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1796569824219 3 357.17843 1068.51346 1.1374 0.00040627 1.1035 0.00039416 2.241 0.00080043 357.17880210175355 38.503 0.41673 34.134 33.916 34.333 -4.3689 58 26 3 0 0 0 0.55144 1 22657 22657 2.4985 0 1 25454000 49446 4736 33405 34170 57571 57571 -0.018054398625281465 QGQSWKEEVVT 11 Unmodified _QGQSWKEEVVT_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000489040.1_1_11:67351618-67352251:+|nuORF;ENST00000494593.1_1_11:67351834-67352083:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.8247680664062 2 645.819867 1289.62518 -0.028225 -1.8228E-05 -2.0328 -0.0013129 -2.0611 -0.0013311 645.8163363784058 96.897 0.2782 96.897 96.717 96.995 0 50 15 5 0 0 0 0.71341 1 53488 53488 2.9952 1.3426 1 1218200 49447 1386 33406 34171 57572 57572 -0.008047270244105675 QGRAPACL 8 Unmodified _QGRAPACL_ 0 0 0 ENST00000497170.5_1_13:101795259-101997694:-|nuORF;ENSG00000102452|ENST00000251127|NALCN;nc|ENSG00000102452|Q8IZF0-2|NALCN;ENST00000470333.1_1_13:101833448-102051507:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2130126953125 2 408.213255 814.411957 0.24617 0.00010049 -1.4052 -0.00057362 -1.159 -0.00047313 408.2126516475543 47.828 0.2464 47.789 47.661 47.907 -0.038643 17 11 2 0 0 0 0.80624 1 25784 25784 2.8892 0 1 1500200 49448 2045 33407 34172 57573 57573 -0.002672664944384451 QGRFQFERY 9 Unmodified _QGRFQFERY_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8721313476562 3 410.871995 1229.59415 -0.33744 -0.00013865 -0.060622 -2.4908E-05 -0.39806 -0.00016355 410.8715035691753 35.177 0.21515 34.955 34.83 35.045 -0.2224 18 9 3 0 0 0 0.18255 1 18418 18418 24.882 11.267 1 2305100 49449 550 33408 34173 57574 57574 -0.011458355479589954 QGRFQFERY 9 Unmodified _QGRFQFERY_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8727416992188 3 410.871995 1229.59415 NaN NaN NaN NaN NaN NaN NaN 34.975 1 35.002 34.502 35.502 0.027401 0 0 0 0.56988 1 18463 18463 13.615 11.332 1 49450 550 33408 34173 57575 57575 -0.011458355479589954 QGRFQFERY 9 Unmodified _QGRFQFERY_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8721008300781 3 410.871995 1229.59415 0.58008 0.00023834 1.0333 0.00042454 1.6134 0.00066288 410.87187295519374 38.533 0.2776 34.164 33.98 34.257 -4.3689 28 17 2 0 0 0 0.067618 1 22739 22739 40.725 30.574 1 12716000 49451 550 33408 34173 57576 57576 -0.011458355479589954 QGRLPEPAF 9 Unmodified _QGRLPEPAF_ 0 0 0 ENST00000423007.5_1_9:134378516-134379643:+|nuORF ENST00000423007.5_1_9:134378516-134379643:+|nuORF ENST00000423007.5_1_9:134378516-134379643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7713012695312 2 507.771991 1013.52943 0.48858 0.00024809 -1.3011 -0.00066068 -0.81255 -0.00041259 507.771119109286 38.203 0.22761 38.203 38.007 38.235 0 18 11 2 0 0 0 0.07916 1 20367 20367 37.974 12.575 1 5052300 49452 13124 33409 34174 57577 57577 0.02320589646035387 QGRQRKPA 8 Unmodified _QGRQRKPA_ 0 0 0 REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7718811035156 2 470.7754 939.536246 0.28365 0.00013354 -4.0647 -0.0019136 -3.781 -0.00178 470.7722324188194 59.205 0.67897 59.152 58.554 59.233 -0.053062 62 33 4 0 0 0 0.79669 1 32292 32292 8.5933 0 1 5322200 + 49453 25420 33410 34175 57578 57578 0.0640594731727333 QGRQRKPA 8 Unmodified _QGRQRKPA_ 0 0 0 REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.7754 939.536246 0.41183 0.00019388 -5.9936 -0.0028216 -5.5818 -0.0026278 470.7725137265742 58.961 0.31343 58.961 58.809 59.123 0 -0.095251 -0.00051703 NaN 8.5933 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 660370 + 49454 25420 33410 34175 0.0640594731727333 QGRWWQGELE 10 Unmodified _QGRWWQGELE_ 0 0 0 REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ REV__nc|ENSG00000107443|Q5T5M9-2|CCNJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8085327148438 2 644.807094 1287.59963 -0.032518 -2.0968E-05 1.6851 0.0010866 1.6526 0.0010656 644.8078063848315 75.892 0.27473 75.892 75.746 76.021 0 18 12 2 0 0 0 0.69377 1 42179 42179 3.5965 0.60125 1 1284600 + 49455 18561 33411 34176 57579 57579 -0.03266156756126293 QGRYCDECI 9 Unmodified _QGRYCDECI_ 0 0 0 ENSG00000198719|ENST00000366756|DLL1 ENSG00000198719|ENST00000366756|DLL1 ENSG00000198719|ENST00000366756|DLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7202758789062 2 543.720784 1085.42701 0.40873 0.00022223 -1.359 -0.00073889 -0.95022 -0.00051666 543.7200597716698 72.653 0.27235 72.177 72 72.273 -0.47589 21 12 2 0 0 0 0.54444 1 39747 39747 4.756 0 1 1565600 49456 10131 33412 34177 57580 57580 -0.11228187479400731 QGSALEALQEK 11 Unmodified _QGSALEALQEK_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.3089599609375 2 587.309135 1172.60372 -0.62399 -0.00036648 -0.54291 -0.00031886 -1.1669 -0.00068534 587.3088007517543 27.329 0.29349 27.329 27.155 27.449 0 41 14 4 0 0 0 0.62603 2 14018 14018;14119 16.566 16.566 1 33395000 + 49457 21816 33413 34178 57581;57582 57581 0.024318879468637533 QGSATLSSASF 11 Unmodified _QGSATLSSASF_ 0 0 0 REV__ENSG00000117036|ENST00000368192|ETV3 REV__ENSG00000117036|ENST00000368192|ETV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2553100585938 2 528.253828 1054.4931 0.32752 0.00017302 1.0034 0.00053006 1.3309 0.00070308 528.2543623174777 72.11 0.52223 72.11 71.84 72.362 0 75 23 4 0 0 0 0.42108 1 40154 40154 20.415 1.1575 1 7407000 + 49458 19082 33414 34179 57583 57583 -0.03196332041329697 QGSGPRHLAGP 11 Unmodified _QGSGPRHLAGP_ 0 0 0 REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF REV__ENST00000380770.3_1_19:10397831-10398857:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7822875976562 2 538.783422 1075.55229 -0.22789 -0.00012278 -1.288 -0.00069397 -1.5159 -0.00081676 538.7825646223946 24.78 0.12621 24.78 24.697 24.823 0 7 5 2 0 0 0 0.30346 1 12688 12688 4.5289 0.33936 1 502580 + 49459 26318 33415 34180 57584 57584 0.017536087635107833 QGSGPRHQGF 10 Unmodified _QGSGPRHQGF_ 0 0 0 REV__ENSG00000143520|ENST00000388718|FLG2 REV__ENSG00000143520|ENST00000388718|FLG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.76025390625 2 535.759946 1069.50534 -0.25705 -0.00013772 0.97399 0.00052182 0.71693 0.0003841 535.7604622533167 41.507 0.76348 41.507 41.304 42.068 0 149 39 6 0 0 0 0.56348 1 22693 22693 13.042 13.042 1 6350799999.999999 + + 49460 16882 33416 34181 57585 57585 -0.026632507876229283 QGSGYWQW 8 Unmodified _QGSGYWQW_ 0 0 0 ENST00000548882.5_1_12:56230822-56231236:-|nuORF ENST00000548882.5_1_12:56230822-56231236:-|nuORF ENST00000548882.5_1_12:56230822-56231236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7204895019531 2 506.219591 1010.42463 0.55052 0.00027868 -0.23417 -0.00011854 0.31635 0.00016014 506.21940886694154 75.077 0.21752 75.077 74.988 75.205 0 38 15 3 0 0 0 0.80676 1 41749 41749 2.5775 0 1 739450 49461 15140 33417 34182 57586 57586 -0.08016531830526219 QGSPGTSYSLD 11 Unmodified _QGSPGTSYSLD_ 0 0 0 nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5 nc|ENSG00000185988|Q496M5-2|PLK5 nc|ENSG00000185988|Q496M5-2|PLK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2483520507812 2 556.248743 1110.48293 -0.26263 -0.00014609 -2.0504 -0.0011405 -2.313 -0.0012866 556.2479061669789 34.286 0.24726 34.286 34.175 34.422 0 30 12 4 0 0 0 0.047603 1 18016 18016 51.415 5.6754 1 9950200 49462 9438 33418 34183 57587 57587 -0.0678893976657946 QGSSKLEEVQS 11 Unmodified _QGSSKLEEVQS_ 0 0 0 REV__ENSG00000140743|ENST00000268383|CDR2 REV__ENSG00000140743|ENST00000268383|CDR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2962036132812 2 596.296224 1190.5779 -0.43961 -0.00026214 -1.0105 -0.00060256 -1.4501 -0.0008647 596.2955746119112 24.915 0.33991 24.915 24.66 25 0 52 29 3 0 0 0 0.6607 1 12709 12709 7.9454 0.33645 1 4138400 + 49463 20491 33419 34184 57588 57588 -0.009770062953748493 QGSTHWQTARV 11 Unmodified _QGSTHWQTARV_ 0 0 0 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 ENSG00000184144|ENST00000331830|CNTN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8179321289062 2 635.817993 1269.62143 -0.7958 -0.00050598 -0.3345 -0.00021268 -1.1303 -0.00071866 635.8177769531864 30.306 0.40688 30.306 30.139 30.546 0 54 19 5 0 0 0 0.47965 2 15693 15693;15790 17.443 9.8337 1 23650000 49464 9223 33420 34185 57589;57590 57589 -0.0025935200760613952 QGSYAGKIHSI 11 Unmodified _QGSYAGKIHSI_ 0 0 0 ENSG00000159708|ENST00000329956|LRRC36 ENSG00000159708|ENST00000329956|LRRC36 ENSG00000159708|ENST00000329956|LRRC36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8070678710938 2 580.806562 1159.59857 -0.040657 -2.3614E-05 0.30679 0.00017819 0.26613 0.00015457 580.8068146758013 39.541 0.23894 39.244 39.112 39.351 -0.29716 22 10 3 0 0 0 0.53099 1 20858 20858 13.615 4.2317 1 2612300 49465 6669 33421 34186 57591 57591 0.02515628874948561 QGTEISKTRQ 10 Unmodified _QGTEISKTRQ_ 0 0 0 nc|ENSG00000163075|Q4G0U5-2|CFAP221;ENSG00000163075|ENST00000413369|CFAP221;nc|ENSG00000163075|Q4G0U5-3|CFAP221;ENST00000413057.6_1_2:120317267-120388537:+|nuORF nc|ENSG00000163075|Q4G0U5-2|CFAP221 nc|ENSG00000163075|Q4G0U5-2|CFAP221 MSMS AL20221201_MKP_PDAC_01 4 383.2068481445312 3 383.207043 1146.5993 NaN NaN NaN NaN NaN NaN NaN 82.464 1 76.288 75.788 76.788 -6.1757 0 0 0 0.95103 1 54168 54168 3.0723 0 1 49466 6948 33422 34187 57592 57592 0.031864235239936534 QGTNDVGWLTF 11 Unmodified _QGTNDVGWLTF_ 0 0 0 REV__ASTN1|p.R1132Q|1|0.24|ENSG00000152092|chr1:176876605-176876605|C/T|missense_variant REV__ASTN1|p.R1132Q|1|0.24|ENSG00000152092|chr1:176876605-176876605|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.1996459960938 3 413.199777 1236.5775 1.3599 0.00056193 -0.88467 -0.00036555 0.47527 0.00019638 413.1992862014568 37.077 0.57826 32.793 32.524 33.102 -4.2835 99 35 3 0 0 0 0.68427 1 21837 21837 2.6312 0 1 47259000 + 49467 16733 33423 34188 57593 57593 -0.03132381224600067 QGTPDVSSALD 11 Unmodified _QGTPDVSSALD_ 0 0 0 ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1 ENST00000592176.1_1_19:45418464-45422484:+|nuORF ENST00000592176.1_1_19:45418464-45422484:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2559814453125 2 545.256568 1088.49858 -0.487 -0.00026554 0.4172 0.00022748 -0.0698 -3.8059E-05 545.2567519831654 34.301 0.47331 34.301 34.123 34.597 0 72 24 5 0 0 0 0.42108 1 18105 18105 20.415 2.0414 1 126820000 49468 4190 33424 34189 57594 57594 -0.042126532495103675 QGTPDVSSALD 11 Unmodified _QGTPDVSSALD_ 0 0 0 ENST00000592176.1_1_19:45418464-45422484:+|nuORF;ENSG00000130208|ENST00000592535|APOC1 ENST00000592176.1_1_19:45418464-45422484:+|nuORF ENST00000592176.1_1_19:45418464-45422484:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 545.256568 1088.49858 -0.487 -0.00026554 0.4172 0.00022748 -0.0698 -3.8059E-05 545.2567519831654 34.301 0.47331 34.301 34.123 34.597 0 0 0 NaN 20.415 72 24 5 NaN NaN NaN NaN 0 NaN NaN 0 126820000 49469 4190 33424 34189 -0.042126532495103675 QGTRSEEEMMR 11 Unmodified _QGTRSEEEMMR_ 0 0 0 REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7 REV__nc|ENSG00000126856|Q9NQW5-1|PRDM7 MSMS AL20221201_MKP_PDAC_01 4 451.8677673339844 3 451.867704 1352.58128 NaN NaN NaN NaN NaN NaN NaN 25.22 1 22.337 21.837 22.837 -2.8831 0 0 0 0.82089 1 13792 13792 11.065 2.7788 1 + 49470 29621 33425 34190 57595 57595 -0.08090402784705475 QGVEFHYVY 9 Unmodified _QGVEFHYVY_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2691650390625 2 571.269281 1140.52401 -0.019376 -1.1069E-05 -0.20734 -0.00011845 -0.22672 -0.00012952 571.2690249835434 51.957 0.26482 51.957 51.864 52.129 0 26 11 3 0 0 0 0.026094 1 28740 28740 57.471 30.588 1 13745000 49471 5556 33426 34191 57596 57596 -0.04063133936415397 QGVEFHYVY 9 Unmodified _QGVEFHYVY_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.266845703125 2 571.269281 1140.52401 0.62554 0.00035735 -2.399 -0.0013705 -1.7735 -0.0010131 571.267431134156 52.621 0.38861 52.187 51.909 52.298 -0.43367 38 19 3 0 0 0 0.12841 1 28428 28428 30.225 16.319 1 13159000 49472 5556 33426 34191 57597 57597 -0.04063133936415397 QGVEFHYVY 9 Unmodified _QGVEFHYVY_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2698364257812 2 571.269281 1140.52401 0.31549 0.00018023 -0.164 -9.3687E-05 0.15149 8.6541E-05 571.2692797009812 58.042 0.53559 52.014 51.77 52.306 -6.0275 43 29 2 0 0 0 0.013323 2 37225 37086;37225 71.134 45.734 1 50549000 49473 5556 33426 34191 57598;57599 57599 -0.04063133936415397 QGVHHFTI 8 Unmodified _QGVHHFTI_ 0 0 0 ENST00000511064.5_1_4:121004470-121086645:+|nuORF ENST00000511064.5_1_4:121004470-121086645:+|nuORF ENST00000511064.5_1_4:121004470-121086645:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7366943359375 2 469.745776 937.477 0.6082 0.0002857 0.3035 0.00014257 0.9117 0.00042827 469.74556806596775 66.785 0.24071 66.785 66.637 66.878 0 12 10 2 0 0 0 0.80143 1 37219 37219 5.7604 0 1 1631400 49474 14601 33427 34192 57600 57600 0.005760513030963921 QGVISIGLFH 10 Unmodified _QGVISIGLFH_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5379028320312 3 357.537953 1069.59203 -0.010459 -3.7394E-06 0.59888 0.00021412 0.58842 0.00021038 357.5381999530968 42.152 0.18641 42.143 42.06 42.247 -0.0088196 12 8 2 0 0 0 0.69917 1 22584 22584 1.4551 0.34536 1 8970800 + 49475 18560 33428 34193 57601 57601 0.060017357141987304 QGVISIGLFH 10 Unmodified _QGVISIGLFH_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 357.537953 1069.59203 -0.25302 -9.0463E-05 1.6846 0.00060229 1.4315 0.00051183 357.5383767115776 41.855 0.35088 41.855 41.607 41.957 0 -0.14387 0.00048055 NaN 1.4551 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 3049000 + 49476 18560 33428 34193 0.060017357141987304 QGVISIGLFH 10 Unmodified _QGVISIGLFH_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.537953 1069.59203 -0.010459 -3.7394E-06 0.59888 0.00021412 0.58842 0.00021038 357.5381999530968 42.152 0.18641 42.143 42.06 42.247 -0.0088196 0.14387 -0.00068396 NaN 1.4551 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 8970800 + 49477 18560 33428 34193 0.060017357141987304 QGVLEHHTY 9 Unmodified _QGVLEHHTY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8456726074219 3 361.845446 1082.51451 -0.43295 -0.00015666 1.4355 0.00051943 1.0026 0.00036277 361.8458852736759 20.271 0.2377 20.271 20.119 20.357 0 36 15 3 0 0 0 0.095405 1 10178 10178 45.7 38.976 1 3156500 49478 10010 33429 34194 57602 57602 -0.023449022219665494 QGVLEHHTY 9 Unmodified _QGVLEHHTY_ 0 0 0 nc|ENSG00000197858|O43292-2|GPAA1;ENSG00000197858|ENST00000355091|GPAA1;ENST00000530796.1_1_8:145140395-145141025:+|nuORF;ENST00000529638.1_1_8:145140125-145141025:+|nuORF nc|ENSG00000197858|O43292-2|GPAA1 nc|ENSG00000197858|O43292-2|GPAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8459777832031 3 361.845446 1082.51451 0.98236 0.00035546 0.46614 0.00016867 1.4485 0.00052413 361.845426727879 22.766 0.28921 19.988 19.828 20.117 -2.7784 60 22 4 0 0 0 0.06187 2 12203 12203;12316 38.176 29.43 1 13368000 49479 10010 33429 34194 57603;57604 57603 -0.023449022219665494 QGVPHPSL 8 Unmodified _QGVPHPSL_ 0 0 0 REV__ENST00000369787.7_1_1:110775187-110775409:+|nuORF REV__ENST00000369787.7_1_1:110775187-110775409:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.7268676757812 2 417.727052 833.439552 0.92261 0.0003854 1.7114 0.0007149 2.634 0.0011003 417.72691670268665 68.118 0.53248 61.943 61.707 62.239 -6.1757 65 31 3 0 0 0 0.5284 1 44325 44325 32.117 1.8922 1 42336000 + 49480 26043 33430 34195 57605 57605 0.016169600374723814 QGVRDRAW 8 Unmodified _QGVRDRAW_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7116088867188 2 494.259582 986.504612 -0.10405 -5.1426E-05 2.4858 0.0012286 2.3817 0.0011772 494.26065446538166 52.245 0.38445 52.245 52.039 52.423 0 26 16 2 0 0 0 8.7369 1 28835 28835 9.3474 9.3474 1 2583400 + 49481 23805 33431 34196 57606 57606 0.010819545633125927 QGVRGPPP 8 Unmodified _QGVRGPPP_ 0 0 0 ENST00000357022.6_2_2:61404673-61404988:+|nuORF ENST00000357022.6_2_2:61404673-61404988:+|nuORF ENST00000357022.6_2_2:61404673-61404988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2278442382812 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 19.082 1 19.082 18.582 19.582 0 0 0 0 0.97444 1 9524 9524 2.5775 0 1 49482 12105 33432 34197 57607 57607 0.02892379757327035 QGVSAVPL 8 Unmodified _QGVSAVPL_ 0 0 0 REV__ENST00000609439.2_2_7:45849579-45850077:+|nuORF REV__ENST00000609439.2_2_7:45849579-45850077:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.7245483398438 2 385.723978 769.433404 NaN NaN NaN NaN NaN NaN NaN 35.809 1 35.834 35.334 36.334 0.024967 0 0 0 0.97444 1 18948 18948 2.3027 0 1 + 49483 29332 33433 34198 57608 57608 0.03946441805953782 QGVTGYDISM 10 Oxidation (M) _QGVTGYDISM(Oxidation (M))_ QGVTGYDISM(1) QGVTGYDISM(42) 0 0 1 ENSG00000154262|ENST00000284425|ABCA6;ENST00000590311.5_1_17:67101582-67103939:-|nuORF;ENST00000589803.5_1_17:67102167-67114054:-|nuORF ENSG00000154262|ENST00000284425|ABCA6 ENSG00000154262|ENST00000284425|ABCA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7415771484375 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 54.008 1 54.008 53.508 54.508 0 0 0 0 0.21708 1 29965 29965 41.84 9.0539 1 49484 6313 33434 34199 57609 57609 1114 -0.06939094150334313 QGVVTTLENV 10 Unmodified _QGVVTTLENV_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2879638671875 2 530.287671 1058.56079 1.1381 0.00060354 -3.501 -0.0018565 -2.3628 -0.001253 530.2871381703798 40.792 0.27724 36.262 36.113 36.39 -4.5294 25 16 2 0 0 0 0.10406 1 24392 24392 45.74 12.954 1 10083000 49485 3120 33435 34200 57610 57610 0.03385117889456524 QGWAAGWWDLV 11 Unmodified _QGWAAGWWDLV_ 0 0 0 REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF REV__ENST00000337304.2_1_22:39916672-39916864:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8104858398438 2 644.809105 1287.60366 -0.032362 -2.0867E-05 0.3938 0.00025392 0.36144 0.00023306 644.8092512198673 76.613 0.28889 76.613 76.419 76.708 0 26 11 3 0 0 0 0.71341 1 42547 42547 2.9952 0 1 1287400 + 49486 25659 33436 34201 57611 57611 -0.028640672624305807 QGWLVRFK 8 Unmodified _QGWLVRFK_ 0 0 0 nc|ENSG00000293473|B2RD01|CENPBD1P nc|ENSG00000293473|B2RD01|CENPBD1P nc|ENSG00000293473|B2RD01|CENPBD1P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.300537109375 2 517.300719 1032.58688 NaN NaN NaN NaN NaN NaN NaN 94.779 1 94.358 93.858 94.858 -0.42044 0 0 0 0.97444 1 51776 51776 0.69038 0 1 49487 16655 33437 34202 57612 57612 0.07189476642270165 QGYDTEVDE 9 Unmodified _QGYDTEVDE_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.4764099121094 3 352.476976 1054.4091 0.095456 3.3646E-05 -1.0761 -0.00037929 -0.98061 -0.00034564 352.47657821018214 82.379 0.24598 82.379 82.314 82.56 0 15 9 2 0 0 0 0.57757 1 45729 45729 2.7352 1.6637 1 451110 49488 7756 33438 34203 57613 57613 -0.11592907928888962 QGYGAFLP 8 Unmodified _QGYGAFLP_ 0 0 0 ENSG00000177508|ENST00000329734|IRX3 ENSG00000177508|ENST00000329734|IRX3 ENSG00000177508|ENST00000329734|IRX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7171630859375 2 426.716153 851.417754 0.72313 0.00030857 0.98341 0.00041964 1.7065 0.00072821 426.71659733972774 81.591 0.62408 81.096 80.767 81.392 -0.4952 59 25 3 0 0 0 0.80975 1 44566 44566 0.79363 0 1 1779900 49489 8691 33439 34204 57614 57614 -0.013898447110932466 QGYYLIYC 8 Unmodified _QGYYLIYC_ 0 0 0 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7353515625 2 511.736228 1021.4579 NaN NaN NaN NaN NaN NaN NaN 17.402 1 17.402 16.902 17.902 0 0 0 0 0.97348 1 8571 8571 5.7604 2.1639 1 49490 10928 33440 34205 57615 57615 -0.05196666102835934 QHAFLYIRQLA 11 Unmodified _QHAFLYIRQLA_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF;ENST00000452600.1_1_2:130987586-130988813:+|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.3795776367188 2 680.380229 1358.7459 0.35992 0.00024488 -0.28992 -0.00019726 0.069997 4.7625E-05 680.3799355157815 94.855 0.2392 94.487 94.38 94.619 -0.36814 17 10 2 0 0 0 0.71618 1 51825 51825 2.7352 1.5419 1 616470 49491 9710 33441 34206 57616 57616 0.08088145479723607 QHALGRPSLG 10 Unmodified _QHALGRPSLG_ 0 0 0 REV__ENSG00000235034|ENST00000425202|C19orf81 REV__ENSG00000235034|ENST00000425202|C19orf81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1036.732788085938 1 1035.5694 1034.56213 0.31545 0.00032667 -0.81693 -0.00084598 -0.50147 -0.00051931 1037.5704230532874 26.958 0.16562 26.926 26.836 27.002 -0.031706 17 10 3 0 0 0 0.69377 1 13860 13860 3.5965 1.019 1 52243000 + 49492 24419 33442 34207 57617 57617 0.04622796768876469 QHALGRPSLG 10 Unmodified _QHALGRPSLG_ 0 0 0 REV__ENSG00000235034|ENST00000425202|C19orf81 REV__ENSG00000235034|ENST00000425202|C19orf81 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1035.5694 1034.56213 0.31545 0.00032667 -0.81693 -0.00084598 -0.50147 -0.00051931 1037.5704230532874 26.958 0.16562 26.926 26.836 27.002 -0.031706 0 0 NaN 3.5965 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 52243000 + 49493 24419 33442 34207 0.04622796768876469 QHARPCLE 8 Unmodified _QHARPCLE_ 0 0 0 REV__ENST00000476151.5_1_7:102281096-102307568:-|nuORF REV__ENST00000476151.5_1_7:102281096-102307568:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7396545410156 2 477.234719 952.454884 0.9141 0.00043624 0.56842 0.00027127 1.4825 0.00070751 477.2322954595094 48.335 0.6539 43.101 42.711 43.365 -5.2339 97 39 4 0 0 0 0.76266 1 29900 29900 11.64 0 1 34711000 + 49494 26855 33443 34208 57618 57618 -0.023244964369837362 QHCESLSLASN 11 Unmodified _QHCESLSLASN_ 0 0 0 nc|ENSG00000263715|P34998-3|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENST00000582766.5_1_17:43884387-43907895:+|nuORF nc|ENSG00000263715|P34998-3|CRHR1;ENST00000582766.5_1_17:43884387-43907895:+|nuORF nc|ENSG00000263715|P34998-3|CRHR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7682495117188 2 594.769319 1187.52409 0.01528 9.0881E-06 0.83327 0.0004956 0.84855 0.00050469 594.7697422419012 51.719 0.37003 51.719 51.583 51.953 0 40 16 3 0 0 0 0.29175 2 28547 28547;28655 27.223 9.3495 1 26209000 49495 3496;15577 33444 34209 57619;57620 57619 -0.06217501998730768 QHCESLSLASN 11 Unmodified _QHCESLSLASN_ 0 0 0 nc|ENSG00000263715|P34998-3|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;nc|ENSG00000263715|P34998-4|CRHR1;ENST00000582766.5_1_17:43884387-43907895:+|nuORF nc|ENSG00000263715|P34998-3|CRHR1;ENST00000582766.5_1_17:43884387-43907895:+|nuORF nc|ENSG00000263715|P34998-3|CRHR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 594.769319 1187.52409 0.64554 0.00038395 -1.0036 -0.00059689 -0.35802 -0.00021294 595.2702318235193 52.332 0.17562 51.898 51.809 51.985 -0.43367 0.089854 -0.001889 NaN 27.223 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2673900 49496 3496;15577 33444 34209 -0.06217501998730768 QHCFQGTY 8 Unmodified _QHCFQGTY_ 0 0 0 REV__ENSG00000188107|ENST00000503581|EYS REV__ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2064819335938 2 492.205627 982.396701 0.71765 0.00035323 0.69293 0.00034107 1.4106 0.0006943 492.2061670968237 56.423 0.3954 50.446 50.236 50.632 -5.9769 52 22 4 0 0 0 0.80143 1 36074 36074 5.7604 0.52976 1 36513000 + 49497 23690 33445 34210 57621 57621 -0.09520178082266284 QHCNATFKRKD 11 Unmodified _QHCNATFKRKD_ 0 0 0 ENSG00000177888|ENST00000367405|ZBTB41;ENST00000467322.1_1_1:197128491-197145097:-|nuORF ENSG00000177888|ENST00000367405|ZBTB41 ENSG00000177888|ENST00000367405|ZBTB41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.3312377929688 2 674.332953 1346.65135 -0.084646 -5.708E-05 -2.1854 -0.0014737 -2.2701 -0.0015308 674.3312771498518 65.555 0.2776 65.555 65.394 65.671 0 24 10 3 0 0 0 0.66428 1 36555 36555 7.609 2.3121 1 1123500 49498 8715 33446 34211 57622 57622 -0.008107363339377116 QHCRTRKY 8 Unmodified _QHCRTRKY_ 0 0 0 ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1 ENST00000411772.5_2_15:43699583-43738985:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5217590332031 3 364.52242 1090.54543 -0.70998 -0.0002588 0.2602 9.4848E-05 -0.44978 -0.00016395 364.52221147095224 30.532 0.18588 30.532 30.443 30.628 0 16 8 3 0 0 0 0.80676 1 15889 15889 1.6526 0 1 1013100 49499 958 33447 34212 57623 57623 0.003779726113180004 QHEEQSSDNF 10 Unmodified _QHEEQSSDNF_ 0 0 0 REV__ENSG00000172215|ENST00000304552|CXCR6 REV__ENSG00000172215|ENST00000304552|CXCR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.83837890625 3 407.498663 1219.47416 0.30782 0.00012543 -0.036858 -1.502E-05 0.27096 0.00011041 407.4986283668146 57.593 0.39926 57.593 57.395 57.794 0 37 19 2 0 0 0 0.72247 1 31942 31942 0.13989 0 1 16458000 + 49500 22634 33448 34213 57624 57624 -0.12679913403053433 QHEGKELVIA 10 Unmodified _QHEGKELVIA_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.3096923828125 2 562.308938 1122.60332 0.63483 0.00035697 1.0471 0.00058877 1.6819 0.00094574 562.3095418505488 60.778 0.43866 60.778 60.514 60.953 0 51 18 4 0 0 0 0.32072 1 33831 33831 26.268 2.2476 1 10693000 49501 5578 33449 34214 57625 57625 0.04692513017721467 QHEGKELVIA 10 Unmodified _QHEGKELVIA_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.3076782226562 2 562.308938 1122.60332 -0.099879 -5.6163E-05 1.3415 0.00075434 1.2416 0.00069818 562.3095319674599 61.309 0.28833 60.82 60.654 60.943 -0.48932 24 13 2 0 0 0 0.42143 1 33361 33361 20.415 5.1661 1 3747200 49502 5578 33449 34214 57626 57626 0.04692513017721467 QHEKRLMRL 9 Unmodified _QHEKRLMRL_ 0 0 0 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1211.68310546875 1 1210.68372 1209.67644 0.28461 0.00034457 -2.1264 -0.0025744 -1.8418 -0.0022299 1211.6840955920093 26.941 0.10019 26.909 26.851 26.951 -0.031708 7 5 2 0 0 0 0.58865 1 13875 13875 2.0598 0 1 36855000 + 49503 20725 33450 34215 57627 57627 0.07999363259364145 QHEMFHGRQSF 11 Oxidation (M) _QHEM(Oxidation (M))FHGRQSF_ QHEM(1)FHGRQSF QHEM(46)FHGRQSF 0 0 1 REV__ENSG00000096654|ENST00000683788|ZNF184 REV__ENSG00000096654|ENST00000683788|ZNF184 MULTI-MSMS AL20221201_MKP_PDAC_01 4 710.3153076171875 2 710.31476 1418.61497 0.99569 0.00070726 -0.037346 -2.6527E-05 0.95835 0.00068073 710.8162762025577 96.776 0.60561 90.6 90.354 90.96 -6.1757 75 35 3 0 0 0 0.073778 1 64127 64127 45.74 24.203 1 20461000 + 49504 17962 33451 34216 57628 57628 1832 -0.0775961323060983 QHENEPLSDD 10 Unmodified _QHENEPLSDD_ 0 0 0 REV__DCLK1|p.G651S|1|0.19|ENSG00000133083|chr13:35793473-35793473|C/T|missense_variant REV__DCLK1|p.G651S|1|0.19|ENSG00000133083|chr13:35793473-35793473|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1679382324219 3 395.166913 1182.47891 NaN NaN NaN NaN NaN NaN NaN 67.905 1 67.905 67.405 68.405 0 0 0 0 0.99248 1 37862 37862 0.62683 0.17231 1 + 49505 16903 33452 34217 57629 57629 -0.10503029260280528 QHEPECKQ 8 Unmodified _QHEPECKQ_ 0 0 0 ENSG00000237136|ENST00000438731|C4orf51 ENSG00000237136|ENST00000438731|C4orf51 ENSG00000237136|ENST00000438731|C4orf51 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7221984863281 2 499.721641 997.428729 NaN NaN NaN NaN NaN NaN NaN 1.0714 1 1.0508 0.55082 1.5508 -0.020623 0 0 0 0.97444 1 554 554 0.69038 0 1 49506 10650 33453 34218 57630 57630 -0.07008810399122467 QHEYGSCGRF 10 Unmodified _QHEYGSCGRF_ 0 0 0 ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862 ENSG00000143520|ENST00000388718|FLG2 ENSG00000143520|ENST00000388718|FLG2 MSMS AL20221201_MKP_PDAC_01 4 395.1695251464844 3 395.169823 1182.48764 NaN NaN NaN NaN NaN NaN NaN 81.665 1 75.49 74.99 75.99 -6.1757 0 0 0 0.97556 1 53615 53615 3.3196 0.58445 1 + 49507 207 33454 34219 57631 57631 -0.09630334104804206 QHFERAEQY 9 Unmodified _QHFERAEQY_ 0 0 0 REV__ENSG00000187862|ENST00000368236|TTC24 REV__ENSG00000187862|ENST00000368236|TTC24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.1878051757812 3 403.187871 1206.54179 -0.57504 -0.00023185 -0.3316 -0.0001337 -0.90663 -0.00036554 403.18771980320844 18.468 0.26794 18.468 18.352 18.62 0 130 32 5 0 0 0 0.55144 1 9232 9232 2.4985 0 1 99447000 + 49508 23670 33455 34220 57632 57632 -0.05322418681566887 QHFHGQNMTI 10 Unmodified _QHFHGQNMTI_ 0 0 0 ENSG00000186792|ENST00000336307|HYAL3;nc|ENSG00000243477|O43820-2|HYAL3 ENSG00000186792|ENST00000336307|HYAL3 ENSG00000186792|ENST00000336307|HYAL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7835693359375 2 606.782564 1211.55058 NaN NaN NaN NaN NaN NaN NaN 61.551 1 61.551 61.051 62.051 0 0 0 0 0.97302 1 34317 34317 3.5965 0 1 49509 9505 33456 34221 57633 57633 -0.04673768316729365 QHFHTKKH 8 Unmodified _QHFHTKKH_ 0 0 0 REV__nc|ENSG00000214198|Q6P2S7|TTC41P REV__nc|ENSG00000214198|Q6P2S7|TTC41P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2371826171875 2 531.783225 1061.5519 -0.22323 -0.00011871 -0.85249 -0.00045334 -1.0757 -0.00057205 532.2836128650085 19.253 0.15536 19.253 19.185 19.34 0 21 9 3 0 0 0 8.7369 1 9599 9599 5.2307 0.47466 1 1439100 + 49510 29937 33457 34222 57634 57634 0.023582338343203446 QHFLRPSF 8 Unmodified _QHFLRPSF_ 0 0 0 REV__nc|ENSG00000292277|Q9UJ98-3|STAG3 REV__nc|ENSG00000292277|Q9UJ98-3|STAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2745971679688 2 516.274701 1030.53485 0.34794 0.00017963 0.22969 0.00011858 0.57763 0.00029822 516.2749131304502 75.449 0.61182 75.449 75.035 75.647 0 54 31 2 0 0 0 0.80143 1 42005 42005 5.7604 0 1 1446500 + 49511 17409 33458 34223 57635 57635 0.020803132285209358 QHGHPLTILE 10 Unmodified _QHGHPLTILE_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8117065429688 2 572.809105 1143.60366 0.74117 0.00042455 1.2376 0.00070889 1.9787 0.0011334 572.8098313953286 30.406 0.34332 30.326 30.178 30.521 -0.080429 38 12 4 0 0 0 0.71981 1 15855 15855 0.40072 0 1 12688000 + 49512 20281 33459 34224 57636 57636 0.037599327375801295 QHHCCHLHCGF 11 Unmodified _QHHCCHLHCGF_ 0 0 0 REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF REV__ENST00000300146.9_1_11:59405566-59405851:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.1786804199219 3 441.176038 1320.50628 -0.67494 -0.00029777 2.031 0.00089602 1.356 0.00059825 441.1769395866841 32.901 0.27516 32.901 32.733 33.008 0 28 13 3 0 0 0 0.72981 1 17192 17192 1.4551 0.67859 1 2765600 + 49513 25305 33460 34225 57637 57637 -0.1411481900624949 QHHLTLSI 8 Unmodified _QHHLTLSI_ 0 0 0 ENSG00000254636|ENST00000528446|ARMS2 ENSG00000254636|ENST00000528446|ARMS2 ENSG00000254636|ENST00000528446|ARMS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7663879394531 2 474.766709 947.518865 NaN NaN NaN NaN NaN NaN NaN 5.2778 1 5.2778 4.7778 5.7778 0 0 0 0 0.97444 1 2537 2537 0.69038 0 1 49514 10778 33461 34226 57638 57638 0.04300606991614586 QHHTVCMDSE 10 Unmodified _QHHTVCMDSE_ 0 0 0 ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1 ENSG00000180198|ENST00000683442|RCC1 ENSG00000180198|ENST00000683442|RCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.4927062988281 3 396.158707 1185.45429 0.51745 0.00020499 0.4457 0.00017657 0.96315 0.00038156 396.15872121176824 63.869 0.3784 63.384 63.255 63.634 -0.48512 39 20 2 0 0 0 0.60623 1 34819 34819 13.615 6.5131 1 8158900 49515 8888 33462 34227 57639 57639 -0.13101703938991704 QHIALFHNY 9 Unmodified _QHIALFHNY_ 0 0 0 REV__nc|ENSG00000112365|O43167-2|ZBTB24 REV__nc|ENSG00000112365|O43167-2|ZBTB24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.8895263671875 3 381.529569 1141.56688 1.069 0.00040785 1.3273 0.00050639 2.3962 0.00091424 381.53031087347074 35.472 0.20519 31.28 31.188 31.394 -4.1928 20 12 2 0 0 0 0.20727 1 20562 20562 2.4985 0 1 6738500 + 49516 18814 33463 34228 57640 57640 0.001756809116614022 QHICVNDRT 9 Unmodified _QHICVNDRT_ 0 0 0 nc|ENSG00000132031|O15232-2|MATN3;ENSG00000132031|ENST00000407540|MATN3 nc|ENSG00000132031|O15232-2|MATN3 nc|ENSG00000132031|O15232-2|MATN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2618408203125 2 543.261465 1084.50838 0.21664 0.00011769 0.10827 5.8822E-05 0.32491 0.00017651 543.2613905799485 93.672 0.42806 93.672 93.473 93.901 0 68 27 3 0 0 0 0.59218 1 51707 51707 1.8442 0 1 4321300 49517 4370 33464 34229 57641 57641 -0.030497437251369774 QHIGNIFMF 9 Oxidation (M) _QHIGNIFM(Oxidation (M))F_ QHIGNIFM(1)F QHIGNIFM(71)F 0 0 1 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7738037109375 2 561.773677 1121.5328 0.71774 0.00040321 -0.30627 -0.00017205 0.41147 0.00023116 561.7734341740567 69.911 0.52203 69.942 69.707 70.229 0.030914 69 26 4 0 0 0 0.013472 2 38392 38392;38512 70.716 47.567 1 48878000 49518 10445 33465 34230 57642;57643 57642 1695 -0.02310483571613986 QHIGNIFMF 9 Oxidation (M) _QHIGNIFM(Oxidation (M))F_ QHIGNIFM(1)F QHIGNIFM(110)F 0 0 1 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7733154296875 2 561.773677 1121.5328 1.2271 0.00068933 -0.58076 -0.00032626 0.64629 0.00036307 561.7734566123629 87.331 0.83221 81.156 80.699 81.531 -6.1757 96 45 3 0 0 0 0.0077963 2 57669 57532;57669 109.63 79.404 1 16846000 49519 10445 33465 34230 57644;57645 57645 1695 -0.02310483571613986 QHIGNIFMF 9 Oxidation (M) _QHIGNIFM(Oxidation (M))F_ QHIGNIFM(1)F QHIGNIFM(54)F 0 0 1 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MSMS AL20221201_MKP_PDAC_01 4 561.7735595703125 2 561.773677 1121.5328 NaN NaN NaN NaN NaN NaN NaN 87.021 1 80.845 80.345 81.345 -6.1757 0 0 0 0.060495 1 57365 57365 53.576 13.127 1 49520 10445 33465 34230 57646 57646 1695 -0.02310483571613986 QHIGNIFMF 9 Unmodified _QHIGNIFMF_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3341064453125 2 553.776219 1105.53789 0.3805 0.00021071 0.29925 0.00016572 0.67975 0.00037643 553.7762932875471 78.049 0.21426 78.101 77.987 78.202 0.052444 15 8 2 0 0 0 0.11012 1 43046 43046 36.044 20.197 1 1047300 49521 10445 33465 34231 57647 57647 -0.010661797089824177 QHIGNIFMF 9 Unmodified _QHIGNIFMF_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7756958007812 2 553.776219 1105.53789 1.5043 0.00083303 0.23528 0.00013029 1.7395 0.00096332 553.7763172437475 97.376 0.3226 91.2 91.062 91.384 -6.1757 46 17 3 0 0 0 0.016184 2 64632 64501;64632 67.344 67.344 1 65917000 49522 10445 33465 34231 57648;57649 57649 -0.010661797089824177 QHIIFKSKKC 10 Unmodified _QHIIFKSKKC_ 0 0 0 REV__nc|ENSG00000164631|P17014-3|ZNF12 REV__nc|ENSG00000164631|P17014-3|ZNF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2373962402344 3 411.237509 1230.6907 NaN NaN NaN NaN NaN NaN NaN 40.521 1 40.526 40.026 41.026 0.0050545 0 0 0 0.97855 1 21611 21611 1.4551 0 1 + 49523 20843 33466 34232 57650 57650 0.08458015687642728 QHIILQSKL 9 Unmodified _QHIILQSKL_ 0 0 0 REV__nc|ENSG00000090612|Q14587-2|ZNF268 REV__nc|ENSG00000090612|Q14587-2|ZNF268 MSMS AL20221201_MKP_PDAC_01 4 360.5556945800781 3 360.557236 1078.64988 NaN NaN NaN NaN NaN NaN NaN 57.97 1 51.942 51.442 52.442 -6.0275 0 0 0 0.20153 1 37116 37116 22.658 4.285 1 + 49524 17865 33467 34233 57651 57651 0.11369997639667417 QHIKNWTLL 9 Unmodified _QHIKNWTLL_ 0 0 0 REV__ENST00000427677.1_1_Y:3551406-3551445:+|nuORF REV__ENST00000427677.1_1_Y:3551406-3551445:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8892211914062 3 384.888986 1151.64513 1.275 0.00049074 -0.85236 -0.00032806 0.42265 0.00016267 384.8887464410413 80.158 0.60083 73.982 73.677 74.278 -6.1757 50 35 2 0 0 0 0.44883 1 52737 52737 10.151 0 1 17463000 + 49525 26928 33468 34234 57652 57652 0.07537113496891834 QHIKSAKLLI 10 Unmodified _QHIKSAKLLI_ 0 0 0 ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN ENSG00000152818|ENST00000367545|UTRN ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2485046386719 3 384.248403 1149.72338 0.31871 0.00012246 1.0153 0.00039013 1.334 0.00051259 384.24890655389873 48.355 0.33654 48.312 48.097 48.434 -0.04369 27 16 2 0 0 0 0.54083 1 26055 26055 14.218 0.6033 1 6520300 49526 6216 33469 34235 57653 57653 0.1545054608211558 QHILCNFELW 10 Unmodified _QHILCNFELW_ 0 0 0 nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000128815|Q6ZS81-5|WDFY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 14.133 1 14.133 13.633 14.633 0 0 0 0 1.0024 1 6697 6697 0.13989 0 1 49527 4092 33470 34236 57654 57654 -0.016068539630396117 QHILKKYY 8 Unmodified _QHILKKYY_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8152465820312 2 546.813659 1091.61277 NaN NaN NaN NaN NaN NaN NaN 33.021 1 33.051 32.551 33.551 0.029743 0 0 0 0.96606 1 17358 17358 2.5775 0.27475 1 49528 4828 33471 34237 57655 57655 0.0706232609388735 QHILYEGPT 9 Unmodified _QHILYEGPT_ 0 0 0 REV__ENSG00000135519|ENST00000257981|KCNH3 REV__ENSG00000135519|ENST00000257981|KCNH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2696533203125 2 529.269281 1056.52401 NaN NaN NaN NaN NaN NaN NaN 26.765 1 26.765 26.265 27.265 0 0 0 0 0.82283 1 13771 13771 4.3292 0 1 + 49529 20074 33472 34238 57656 57656 -0.0019913393641672883 QHKRKYLLFY 10 Unmodified _QHKRKYLLFY_ 0 0 0 ENST00000307808.10_1_4:88052973-88053445:+|nuORF ENST00000307808.10_1_4:88052973-88053445:+|nuORF ENST00000307808.10_1_4:88052973-88053445:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.901123046875 2 698.398422 1394.78229 0.57712 0.00040306 -0.071401 -4.9866E-05 0.50572 0.0003532 698.9001857491696 72.872 0.17851 72.396 72.318 72.497 -0.47588 13 7 2 0 0 0 0.72196 1 39902 39902 0.45834 0 1 430880 49530 11643 33473 34239 57657 57657 0.10069022376455905 QHKVEYGLPE 10 Unmodified _QHKVEYGLPE_ 0 0 0 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.3087768554688 2 600.306395 1198.59824 NaN NaN NaN NaN NaN NaN NaN 81.851 1 81.356 80.856 81.856 -0.4952 0 0 0 1.0004 1 44817 44817 0.35063 0 1 49531 9231 33474 34240 57658 57658 0.006882091551233316 QHLEVKCDVE 10 Unmodified _QHLEVKCDVE_ 0 0 0 ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2;nc|ENSG00000170324|Q68DX3-3|FRMPD2;ENST00000486151.5_1_10:49420141-49482610:-|nuORF ENSG00000170324|ENST00000374201|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5557861328125 3 400.529017 1198.56522 0.12101 4.847E-05 2.451 0.00098169 2.572 0.0010302 400.529731428089 39.319 0.29407 39.319 39.154 39.448 0 37 13 4 0 0 0 0.23609 1 21095 21095 8.4443 2.2525 1 12294000 49532 7971 33475 34241 57659 57659 -0.026117409592416152 QHLLFPDFL 9 Unmodified _QHLLFPDFL_ 0 0 0 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|11;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|80|1|anti-sense;chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|5 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|11 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3065795898438 2 565.305667 1128.59678 3.8601 0.0021822 -1.5367 -0.0008687 2.3234 0.0013135 565.3047556553266 99.511 0.15033 99.474 99.379 99.529 -0.036301 8 5 2 0 0 0 0.43463 1 55286 55286 10.824 0.75 1 1615600 49533 88 33476 34242 57660 57660 0.03762619857002392 QHLPLQQPQL 10 Unmodified _QHLPLQQPQL_ 0 0 0 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 ENSG00000197576|ENST00000360046|HOXA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2293701171875 3 401.227779 1200.66151 -0.092991 -3.7311E-05 0.95681 0.0003839 0.86382 0.00034659 401.22944470834517 33.682 0.36431 33.71 33.543 33.907 0.028931 40 15 4 0 0 0 0.66569 1 17799 17799 3.5871 0.95582 1 4902300 49534 9972 33477 34243 57661 57661 0.06920194663007351 QHLSLFITCH 10 Unmodified _QHLSLFITCH_ 0 0 0 ENST00000543155.5_1_12:6840383-6840503:+|nuORF ENST00000543155.5_1_12:6840383-6840503:+|nuORF ENST00000543155.5_1_12:6840383-6840503:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2052612304688 3 400.206098 1197.59646 0.16352 6.5441E-05 -1.8999 -0.00076035 -1.7364 -0.00069491 400.2054993444407 39.928 0.201 39.631 39.512 39.713 -0.29716 23 9 3 0 0 0 0.46514 1 21083 21083 11.518 6.802 1 2885700 49535 15068 33478 34244 57662 57662 0.005568768654939049 QHLTTKGHF 9 Unmodified _QHLTTKGHF_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7822875976562 2 534.78289 1067.55123 -0.056712 -3.0329E-05 1.2297 0.00065765 1.173 0.00062732 534.7830669077491 39.751 0.32735 39.454 39.264 39.592 -0.29716 23 15 2 0 0 0 0.08691 1 20945 20945 36.127 10.728 1 4367700 49536 832 33479 34245 57663 57663 0.020153943946070285 QHLTTKGHF 9 Unmodified _QHLTTKGHF_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MSMS AL20221201_MKP_PDAC_01 4 534.78271484375 2 534.78289 1067.55123 NaN NaN NaN NaN NaN NaN NaN 44.697 1 39.845 39.345 40.345 -4.852 0 0 0 0.22437 1 27317 27317 29.082 8.667 1 49537 832 33479 34245 57664 57664 0.020153943946070285 QHLTVTFL 8 Unmodified _QHLTVTFL_ 0 0 0 REV__ENST00000367059.3_2_1:207647596-207648195:+|nuORF REV__ENST00000367059.3_2_1:207647596-207648195:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.7715454101562 2 479.77146 957.528367 NaN NaN NaN NaN NaN NaN NaN 45.372 1 40.417 39.917 40.917 -4.9549 0 0 0 0.83301 1 27835 27835 21.747 0.87544 1 + 49538 25971 33480 34246 57665 57665 0.04790375277127623 QHLWRIVM 8 Unmodified _QHLWRIVM_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5351257324219 3 361.535778 1081.5855 NaN NaN NaN NaN NaN NaN NaN 16.293 1 16.298 15.798 16.798 0.0050564 0 0 0 0.97444 1 8163 8163 0.45834 0 1 49539 8106 33481 34247 57666 57666 0.04797519281851237 QHLWRPWKYQ 10 Unmodified _QHLWRPWKYQ_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 721.378662109375 2 721.37802 1440.74149 0.3706 0.00026734 0.30019 0.00021655 0.67079 0.00048389 721.379197633675 26.322 0.080849 26.349 26.301 26.382 0.026951 5 3 2 0 0 0 0.72247 1 13629 13629 0.40072 0.050084 1 3409000 + 49540 20178 33482 34248 57667 57667 0.03874681056845475 QHNTEGQY 8 Unmodified _QHNTEGQY_ 0 0 0 nc|ENSG00000074527|Q9HB63-3|NTN4;nc|ENSG00000074527|Q9HB63-2|NTN4;ENSG00000074527|ENST00000343702|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 nc|ENSG00000074527|Q9HB63-3|NTN4 MSMS AL20221201_MKP_PDAC_01 4 488.7106018066406 2 488.709588 975.404623 NaN NaN NaN NaN NaN NaN NaN 44.283 1 39.431 38.931 39.931 -4.852 0 0 0 0.90769 1 27013 27013 18.135 2.2878 1 49541 1127 33483 34249 57668 57668 -0.0840632756113564 QHPLRRFHAR 10 Unmodified _QHPLRRFHAR_ 0 0 0 ENST00000313431.13_2_1:144931903-144932074:-|nuORF ENST00000313431.13_2_1:144931903-144932074:-|nuORF ENST00000313431.13_2_1:144931903-144932074:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.9180297851562 3 439.918161 1316.73265 NaN NaN NaN NaN NaN NaN NaN 16.41 1 16.415 15.915 16.915 0.0050564 0 0 0 1.0047 1 8227 8227 0.15932 0 1 49542 11714 33484 34250 57669 57669 0.0869575221101968 QHPYQQLYSPT 11 Unmodified _QHPYQQLYSPT_ 0 0 0 REV__ENSG00000235718|ENST00000619721|MFRP REV__ENSG00000235718|ENST00000619721|MFRP MSMS AL20221201_MKP_PDAC_01 4 454.5544128417969 3 454.554331 1360.64116 NaN NaN NaN NaN NaN NaN NaN 15.898 1 13.341 12.841 13.841 -2.557 0 0 0 0.94165 1 8198 8198 0.45452 0 1 + 49543 24421 33485 34251 57670 57670 -0.024730207874654297 QHQEVQAFL 9 Unmodified _QHQEVQAFL_ 0 0 0 ENSG00000204710|ENST00000377185|SPDYC ENSG00000204710|ENST00000377185|SPDYC ENSG00000204710|ENST00000377185|SPDYC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.28173828125 2 550.28018 1098.54581 NaN NaN NaN NaN NaN NaN NaN 40.854 1 40.854 40.354 41.354 0 0 0 0 0.29524 1 21989 21989 25.399 4.9457 1 49544 10321 33486 34252 57671 57671 0.0004767081213685742 QHQGLGQG 8 Unmodified _QHQGLGQG_ 0 0 0 REV__ENST00000526325.5_1_11:767245-772514:-|nuORF REV__ENST00000526325.5_1_11:767245-772514:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.7056579589844 2 412.704109 823.393664 NaN NaN NaN NaN NaN NaN NaN 32.379 1 28.523 28.023 29.023 -3.8562 0 0 0 0.97444 1 18446 18446 2.5775 0 1 + 49545 28367 33487 34253 57672 57672 -0.025096851447528934 QHQKVREY 8 Unmodified _QHQKVREY_ 0 0 0 ENSG00000112561|ENST00000373033|TFEB ENSG00000112561|ENST00000373033|TFEB ENSG00000112561|ENST00000373033|TFEB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3112182617188 2 544.285797 1086.55704 0.16324 8.8852E-05 -2.627 -0.0014298 -2.4638 -0.001341 544.282156362183 37.762 0.2232 37.762 37.662 37.885 0 20 10 3 0 0 0 8.7369 1 20064 20064 21.747 1.293 1 1380900 49546 2899 33488 34254 57673 57673 0.01722492906287698 QHQQFLQL 8 Unmodified _QHQQFLQL_ 0 0 0 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 ENSG00000146830|ENST00000678049|GIGYF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7791137695312 2 521.277441 1040.54033 0.49443 0.00025774 0.34314 0.00017887 0.83758 0.00043661 521.2774266329781 75.226 0.18613 75.226 75.157 75.343 0 15 9 2 0 0 0 8.7369 1 41818 41818 2.5775 0 1 695120 49547 5799 33489 34255 57674 57674 0.021679920203496295 QHQSSTSFQE 10 Unmodified _QHQSSTSFQE_ 0 0 0 ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000527286.5_1_11:111789765-111796920:+|nuORF ENST00000527286.5_1_11:111789765-111796920:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7598876953125 2 589.757266 1177.49998 0.40242 0.00023733 3.1726 0.001871 3.575 0.0021084 589.7595093496298 68.007 0.39241 68.032 67.735 68.127 0.025146 41 18 3 0 0 0 0.46077 1 37306 37306 18.373 3.1246 1 11983000 49548 14831 33490 34256 57675 57675 -0.08167019160759992 QHRAAFSK 8 Unmodified _QHRAAFSK_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B;ENSG00000218305|ENST00000650262|CDC14C;nc|ENSG00000081377|O60729-5|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7567749023438 2 472.756675 943.498798 NaN NaN NaN NaN NaN NaN NaN 28.062 1 28.091 27.591 28.591 0.029564 0 0 0 0.97444 1 14599 14599 2.3027 0 1 49549 1324 33491 34257 57676 57676 0.02478856051652656 QHRRDRWHHIF 11 Unmodified _QHRRDRWHHIF_ 0 0 0 REV__ENSG00000261247|ENST00000569052|GOLGA8T REV__ENSG00000261247|ENST00000569052|GOLGA8T MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 794.4105834960938 2 794.411249 1586.80794 0.024749 1.966E-05 -0.11323 -8.9954E-05 -0.088485 -7.0294E-05 794.4110564653388 95.981 0.14595 95.677 95.574 95.72 -0.30473 10 7 2 0 0 0 0.7453 1 52391 52391 0 0 1 259120 + 49550 24582 33492 34258 57677 57677 0.03801309671439412 QHRRLLKLRS 10 Unmodified _QHRRLLKLRS_ 0 0 0 REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.9135131835938 2 653.912562 1305.81057 NaN NaN NaN NaN NaN NaN NaN 56.188 1 56.12 55.62 56.62 -0.068737 0 0 0 1.0019 1 30554 30554 0.45834 0 1 + 49551 19815 33493 34259 57678 57678 0.1698976507639145 QHSACLCFF 9 Unmodified _QHSACLCFF_ 0 0 0 ENST00000524669.5_1_11:57416538-57416754:-|nuORF ENST00000524669.5_1_11:57416538-57416754:-|nuORF ENST00000524669.5_1_11:57416538-57416754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8202209472656 3 352.486095 1054.43646 0.094681 3.3374E-05 2.6832 0.00094579 2.7779 0.00097917 352.82079797828743 78.966 0.27027 78.966 78.872 79.142 0 19 12 2 0 0 0 0.59218 1 43903 43903 0.96228 0.50394 1 334390 49552 14781 33494 34260 57679 57679 -0.0885837440321211 QHSATGHF 8 Unmodified _QHSATGHF_ 0 0 0 REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7043151855469 2 442.704109 883.393664 -0.10592 -4.6889E-05 0.44655 0.00019769 0.34064 0.0001508 442.70440510921816 37.69 0.41177 37.418 37.206 37.618 -0.27133 26 18 2 0 0 0 0.48669 1 19758 19758 36.044 3.9272 1 2445500 + 49553 24844 33495 34261 57680 57680 -0.05269685144764935 QHSATGHF 8 Unmodified _QHSATGHF_ 0 0 0 REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7045288085938 2 442.704109 883.393664 0.94639 0.00041897 0.068115 3.0155E-05 1.0145 0.00044913 442.7040377221322 41.527 0.52826 36.919 36.722 37.25 -4.6079 55 34 2 0 0 0 0.40035 2 25004 24857;25004 44.407 21.259 1 19858000 + 49554 24844 33495 34261 57681;57682 57682 -0.05269685144764935 QHSATGHF 8 Unmodified _QHSATGHF_ 0 0 0 REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.5630798339844 2 442.704109 883.393664 0.94639 0.00041897 0.068115 3.0155E-05 1.0145 0.00044913 442.7040377221322 41.527 0.52826 36.919 36.722 37.25 -4.6079 55 34 2 0 0 0 8.7369 1 25062 25062 36.044 3.9272 1 19858000 + 49555 24844 33495 34261 57683 57683 -0.05269685144764935 QHSATGHF 8 Unmodified _QHSATGHF_ 0 0 0 REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF REV__ENST00000241527.10_1_2:242035830-242036751:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 442.704109 883.393664 -0.10592 -4.6889E-05 0.44655 0.00019769 0.34064 0.0001508 442.70440510921816 37.69 0.41177 37.418 37.206 37.618 -0.27133 0 0 NaN 36.044 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2445500 + 49556 24844 33495 34261 -0.05269685144764935 QHSCSRGSDG 10 Unmodified _QHSCSRGSDG_ 0 0 0 nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000150672|Q15700-4|DLG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1034.413818359375 1 1033.41158 1032.40431 1.686 0.0017423 -3.3976 -0.0035111 -1.7116 -0.0017688 1033.4105067865576 62.519 0.13957 56.343 56.302 56.442 -6.1757 8 6 2 0 0 0 0.6785 1 40347 40347 5.2969 0.066215 1 19326000 49557 16268 33496 34262 57684 57684 -0.11060070552639445 QHSRCPAQIF 10 Unmodified _QHSRCPAQIF_ 0 0 0 ENST00000495690.6_1_1:156552093-156554937:+|nuORF;ENST00000413282.6_1_1:156552045-156554937:+|nuORF ENST00000495690.6_1_1:156552093-156554937:+|nuORF ENST00000495690.6_1_1:156552093-156554937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.7938232421875 2 593.792932 1185.57131 1.8574 0.0011029 -0.32722 -0.0001943 1.5302 0.0009086 593.7927145066435 94.497 0.31988 94.511 94.323 94.643 0.014244 28 11 3 0 0 0 0.69064 1 52584 52584 3.9444 0 1 4557500 49558 12996 33497 34263 57685 57685 -0.014051779370902295 QHSSSSNG 8 Unmodified _QHSSSSNG_ 0 0 0 nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2;ENST00000559862.5_1_15:48451996-48470434:-|nuORF;nc|ENSG00000104177|Q9P2K5-4|MYEF2 nc|ENSG00000104177|Q9P2K5-2|MYEF2 nc|ENSG00000104177|Q9P2K5-2|MYEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1683654785156 2 402.167556 802.320559 1.3075 0.00052584 0.16973 6.8259E-05 1.4772 0.0005941 402.1674102623418 86.785 0.53733 80.609 80.338 80.876 -6.1757 72 28 3 0 0 0 0.80232 1 57326 57326 5.2307 2.9279 1 41361000 49559 2183 33498 34264 57686 57686 -0.08850858658024663 QHTFCKPCLQ 10 Unmodified _QHTFCKPCLQ_ 0 0 0 ENSG00000156463|ENST00000359120|SH3RF2 ENSG00000156463|ENST00000359120|SH3RF2 ENSG00000156463|ENST00000359120|SH3RF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2855224609375 2 602.783718 1203.55288 0.62328 0.0003757 0.8871 0.00053473 1.5104 0.00091043 602.7840486739244 72.571 1.2252 72.095 71.469 72.694 -0.47609 92 49 4 0 0 0 0.67459 1 39836 39836 5.7319 0.97584 1 10929000 49560 6454 33499 34265 57687 57687 -0.040750559033085665 QHVAAVTF 8 Unmodified _QHVAAVTF_ 0 0 0 REV__TBC1D1|p.Q377H|1|0.07|ENSG00000065882|chr4:38021639-38021639|G/T|missense_variant REV__TBC1D1|p.Q377H|1|0.07|ENSG00000065882|chr4:38021639-38021639|G/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2658996582031 2 436.734877 871.455202 0.31124 0.00013593 -1.1059 -0.000483 -0.79471 -0.00034708 436.7346502865478 39.415 0.2445 39.415 39.244 39.488 0 17 11 2 0 0 0 8.7369 1 21078 21078 7.9102 0 1 1767800 + 49561 30108 33500 34266 57688 57688 0.01433246554518064 QHVASGLWL 9 Unmodified _QHVASGLWL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7744140625 2 505.774534 1009.53451 -0.42443 -0.00021467 0.019526 9.8756E-06 -0.4049 -0.00020479 505.774372903509 39.266 0.24087 38.979 38.861 39.101 -0.28687 20 11 3 0 0 0 0.095405 1 20716 20716 34.102 1.797 1 4399800 49562 9779 33501 34267 57689 57689 0.03012893508673642 QHVQEWWE 8 Unmodified _QHVQEWWE_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENST00000569959.5_1_16:30214216-30214357:+|nuORF;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;ENST00000562257.5_1_16:30212387-30214357:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000197165|ENST00000335715|SULT1A2;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3223266601562 2 571.256705 1140.49886 0.70295 0.00040157 -3.7912 -0.0021658 -3.0883 -0.0017642 571.2552982317029 38.829 0.24503 38.829 38.725 38.97 0 15 10 2 0 0 0 8.7369 1 20841 20841 11.64 5.9084 1 811510 49563 9829;10450;9920 33502 34268 57690 57690 -0.06577188738992845 QHWMVISEFQY 11 Unmodified _QHWMVISEFQY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;ENST00000464234.5_1_3:195474049-195480138:-|nuORF ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2300109863281 3 489.8957 1466.66527 -0.26536 -0.00013 -0.66721 -0.00032687 -0.93257 -0.00045686 489.8958481461551 35.712 0.20049 35.489 35.372 35.573 -0.2224 25 8 4 0 0 0 0.71036 1 18692 18692 1.3296 0 1 5912400 49564 5669 33503 34269 57691 57691 -0.04939503625450925 QHYKLYEFMFY 11 Unmodified _QHYKLYEFMFY_ 0 0 0 nc|ENSG00000183346|Q8IVU9|CABCOCO1;ENSG00000183346|ENST00000648843|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 nc|ENSG00000183346|Q8IVU9|CABCOCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.9153442382812 3 523.579601 1567.71697 -0.10752 -5.6296E-05 2.3494 0.0012301 2.2419 0.0011738 523.915781159483 26.024 0.1821 26.024 25.924 26.106 0 17 8 3 0 0 0 0.73992 1 13372 13372 0.50596 0.051438 1 1309800 49565 9140 33504 34270 57692 57692 -0.04417759931584442 QHYYQHYYF 9 Unmodified _QHYYQHYYF_ 0 0 0 ENST00000510376.1_1_5:176332285-176333139:-|nuORF ENST00000510376.1_1_5:176332285-176333139:-|nuORF ENST00000510376.1_1_5:176332285-176333139:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.7919921875 2 674.790912 1347.56727 NaN NaN NaN NaN NaN NaN NaN 89.286 1 89.286 88.786 89.786 0 0 0 0 0.85737 1 49406 49406 0.6015 0.076735 1 49566 14586 33505 34271 57693 57693 -0.0926094415915486 QIAIPVAH 8 Unmodified _QIAIPVAH_ 0 0 0 REV__ENST00000438965.1_1_1:108815823-108815895:-|nuORF REV__ENST00000438965.1_1_1:108815823-108815895:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2477416992188 2 424.75307 847.491587 0.16595 7.0486E-05 2.0931 0.00088904 2.259 0.00095952 424.75296139996374 22.006 0.37902 22.02 21.876 22.255 0.013796 20 15 2 0 0 0 8.7369 1 11287 11287 5.7604 0 1 782940 + 49567 27058 33506 34272 57694 57694 0.06174123451239666 QIAPLHLVPP 10 Unmodified _QIAPLHLVPP_ 0 0 0 REV__ENSG00000157933|ENST00000378536|SKI REV__ENSG00000157933|ENST00000378536|SKI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8292236328125 2 542.829309 1083.64407 0.24147 0.00013108 1.3985 0.00075917 1.64 0.00089025 542.8302456648258 39.11 0.19596 39.122 39.021 39.217 0.011452 13 8 2 0 0 0 0.66652 1 20830 20830 7.2892 0 1 1185300 + 49568 21407 33507 34273 57695 57695 0.10558899127977384 QIDDDFCGQD 10 Unmodified _QIDDDFCGQD_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.2821044921875 2 578.216585 1154.41862 1.3226 0.00076472 -0.94271 -0.00054509 0.37985 0.00021963 578.2163318060733 87.948 0.5266 81.773 81.57 82.096 -6.1757 68 29 3 0 0 0 0.23412 1 58144 58144 9.3831 5.4387 1 25490000 49569 3047 33508 34274 57696 57696 -0.1524146291501438 QIDKNQYII 9 Unmodified _QIDKNQYII_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3151245117188 2 567.811313 1133.60807 1.1305 0.00064189 2.4658 0.0014001 3.5963 0.002042 567.8112515644817 79.232 0.98008 73.057 72.468 73.448 -6.1757 120 56 3 0 0 0 0.047714 1 51585 51585 45.74 5.7826 1 23316000 + 49570 20652 33509 34275 57697 57697 0.04661397160475644 QIDLLQQY 8 Unmodified _QIDLLQQY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.771484375 2 510.771657 1019.52876 0.91161 0.00046562 0.40748 0.00020813 1.3191 0.00067375 510.7719796902701 61.065 0.56929 54.918 54.667 55.236 -6.1478 65 29 3 0 0 0 0.36356 1 39354 39354 48.346 2.3249 1 99501000 49571 1980 33510 34276 57698 57698 0.019777502063334396 QIEKYSWRE 9 Unmodified _QIEKYSWRE_ 0 0 0 nc|ENSG00000178690|Q8N1N2|DYNAP nc|ENSG00000178690|Q8N1N2|DYNAP nc|ENSG00000178690|Q8N1N2|DYNAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5441284179688 3 413.543655 1237.60914 NaN NaN NaN NaN NaN NaN NaN 17.772 1 17.777 17.277 18.277 0.0050564 0 0 0 0.85798 1 8980 8980 0.23584 0 1 49572 16414 33511 34277 57699 57699 -0.00016388470635320118 QIENGYFVHYF 11 Unmodified _QIENGYFVHYF_ 0 0 0 CON__Q3T052;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4 CON__Q3T052 CON__Q3T052 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.8903503417969 3 472.890944 1415.651 0.21171 0.00010012 -1.8929 -0.00089513 -1.6812 -0.00079501 473.2243774068389 48.678 0.21798 48.635 48.516 48.734 -0.04369 21 10 3 0 0 0 0.631 1 26261 26261 9.7643 5.6476 1 2928600 + 49573 203 33512 34278 57700 57700 -0.04019832782091726 QIENLKQQL 9 Unmodified _QIENLKQQL_ 0 0 0 nc|ENSG00000118197|Q5T1V6-2|DDX59;ENSG00000118197|ENST00000331314|DDX59 nc|ENSG00000118197|Q5T1V6-2|DDX59 nc|ENSG00000118197|Q5T1V6-2|DDX59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3175659179688 2 557.316763 1112.61897 0.80112 0.00044648 -0.97505 -0.00054341 -0.17392 -9.693E-05 557.3169213066166 38.823 0.24938 38.823 38.703 38.953 0 17 10 2 0 0 0 0.011671 1 20770 20770 75.761 9.3041 1 2434000 49574 3356 33513 34279 57701 57701 0.06716799534751772 QIFGHEVAHCL 11 Unmodified _QIFGHEVAHCL_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.540283203125 3 418.541369 1252.60228 0.49083 0.00020543 -2.1495 -0.00089965 -1.6586 -0.00069421 418.54037297782276 52.511 0.1738 52.077 52.023 52.197 -0.43367 14 8 2 0 0 0 0.6249 1 28397 28397 5.0475 1.1712 1 1854900 + 49575 17564 33514 34280 57702 57702 -0.013920246228508404 QIFGHEVAHCL 11 Unmodified _QIFGHEVAHCL_ 0 0 0 REV__ENSG00000075213|ENST00000265362|SEMA3A REV__ENSG00000075213|ENST00000265362|SEMA3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 418.541369 1252.60228 0.49083 0.00020543 -2.1495 -0.00089965 -1.6586 -0.00069421 418.54037297782276 52.511 0.1738 52.077 52.023 52.197 -0.43367 0 0 NaN 5.0475 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1854900 + 49576 17564 33514 34280 -0.013920246228508404 QIFNELQPI 9 Unmodified _QIFNELQPI_ 0 0 0 REV__nc|ENSG00000005436|P16383-2|GCFC2 REV__nc|ENSG00000005436|P16383-2|GCFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3009033203125 2 551.300581 1100.58661 0.92026 0.00050734 -0.43316 -0.0002388 0.4871 0.00026854 551.3004370370747 60.032 0.38686 53.917 53.713 54.1 -6.1147 37 20 2 0 0 0 0.14 1 38526 38526 29.082 1.8583 1 39044000 + 49577 16969 33515 34281 57703 57703 0.04034012131751297 QIFYPNLIR 9 Unmodified _QIFYPNLIR_ 0 0 0 REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5606689453125 3 388.557236 1162.64988 0.68967 0.00026797 4.1979 0.0016311 4.8876 0.0018991 388.5606281692615 52.628 0.33984 52.57 52.368 52.708 -0.058914 37 16 3 0 0 0 0.37578 1 28458 28458 13.615 6.5131 1 5407600 + 49578 19538 33516 34282 57704 57704 0.07505997639623274 QIGPKRIRKAA 11 Unmodified _QIGPKRIRKAA_ 0 0 0 ENST00000470787.6_1_1:249144674-249149911:-|nuORF;ENST00000533927.5_1_1:249144411-249149911:-|nuORF;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692 ENST00000470787.6_1_1:249144674-249149911:-|nuORF ENST00000470787.6_1_1:249144674-249149911:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 619.396484375 2 619.396213 1236.77787 NaN NaN NaN NaN NaN NaN NaN 106.77 1 100.59 100.09 101.09 -6.1757 0 0 0 0.94307 1 71450 71450 0.30703 0 1 49579 8072 33517 34283 57705 57705 0.16895557953557727 QIHHRHYQL 9 Unmodified _QIHHRHYQL_ 0 0 0 ENST00000451613.5_1_4:57248692-57248746:-|nuORF ENST00000451613.5_1_4:57248692-57248746:-|nuORF ENST00000451613.5_1_4:57248692-57248746:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.2194213867188 3 411.219617 1230.63702 -0.24757 -0.0001018 -0.032455 -1.3346E-05 -0.28002 -0.00011515 411.21978277788725 34.121 0.33428 33.93 33.77 34.104 -0.19131 28 12 4 0 0 0 0.41742 1 17803 17803 7.609 3.0801 1 4514900 49580 13525 33518 34284 57706 57706 0.03092979300117804 QIIFFSMILLV 11 Unmodified _QIIFFSMILLV_ 0 0 0 nc|ENSG00000258806|Q8NGC8|OR11H7 nc|ENSG00000258806|Q8NGC8|OR11H7 nc|ENSG00000258806|Q8NGC8|OR11H7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3910522460938 2 662.390885 1322.76722 0.63655 0.00042165 -0.078288 -5.1857E-05 0.55827 0.00036979 662.3909857152049 62.944 0.25836 62.922 62.791 63.049 -0.021614 28 12 3 0 0 0 0.69708 1 34410 34410 4.5289 0.93237 1 4977000 49581 16592 33519 34285 57707 57707 0.1187439446425742 QIIGSNSCPF 10 Unmodified _QIIGSNSCPF_ 0 0 0 ENST00000583810.5_1_17:8783958-8785234:-|nuORF;nc|ENSG00000141506|Q8WYR1-2|PIK3R5;ENSG00000141506|ENST00000447110|PIK3R5 ENST00000583810.5_1_17:8783958-8785234:-|nuORF ENST00000583810.5_1_17:8783958-8785234:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7540893554688 2 533.255317 1064.49608 0.11338 6.0458E-05 -0.82263 -0.00043867 -0.70925 -0.00037821 533.2553093325085 43.553 0.26342 43.553 43.341 43.605 0 59 12 5 0 0 0 0.63399 1 23608 23608 9.3831 0 1 130240000 49582 5340 33520 34286 57708 57708 -0.03358780188182209 QIILTWLPLFV 11 Unmodified _QIILTWLPLFV_ 0 0 0 REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF REV__ENST00000261488.10_1_13:43987046-43987121:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.9102172851562 2 671.910299 1341.80605 0.57936 0.00038928 0.23107 0.00015526 0.81043 0.00054454 671.9102943539394 100.69 0.11158 94.519 94.459 94.57 -6.1757 18 7 3 0 0 0 0.54415 1 67399 67399 22.658 7.4096 1 56949000 + 49583 24990 33521 34287 57709 57709 0.14881443090257562 QIIQEKRGY 9 Unmodified _QIIQEKRGY_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.88037109375 3 378.880379 1133.61931 1.6834 0.0006378 -1.4938 -0.00056595 0.18962 7.1844E-05 378.8799920251726 21.607 0.28994 18.872 18.725 19.015 -2.7348 52 19 3 0 0 0 0.08907 1 11558 11558 35.612 21.207 1 6355100 49584 9424 33522 34288 57710 57710 0.05784219254633172 QIITLQVVNM 10 Oxidation (M) _QIITLQVVNM(Oxidation (M))_ QIITLQVVNM(1) QIITLQVVNM(60) 0 0 1 ENSG00000102974|ENST00000264010|CTCF;ENST00000566078.1_1_16:67644735-67645545:+|nuORF ENSG00000102974|ENST00000264010|CTCF ENSG00000102974|ENST00000264010|CTCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.83056640625 2 587.828649 1173.64274 -0.12088 -7.1058E-05 0.068683 4.0374E-05 -0.052198 -3.0684E-05 587.8291905466446 69.554 0.34838 69.075 68.874 69.223 -0.47903 55 14 5 0 0 0 0.046375 1 38065 38065 60.074 16.302 1 7439700 49585 2087 33523 34289 57711 57711 358 0.06286896976916978 QIIVQLVRL 9 Unmodified _QIIVQLVRL_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.1902465820312 3 361.241248 1080.70191 0.11517 4.1605E-05 1.5207 0.00054934 1.6359 0.00059094 361.2418243037175 28.084 0.46945 28.113 27.885 28.354 0.029564 32 18 3 0 0 0 0.2188 1 14518 14518 1.0715 0.20709 1 23117000 + 49586 17772 33524 34290 57712 57712 0.16479161053416647 QILCVLYWW 9 Unmodified _QILCVLYWW_ 0 0 0 REV__nc|ENSG00000205944|Q13117-2|DAZ2 REV__nc|ENSG00000205944|Q13117-2|DAZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5483093261719 3 408.547572 1222.62089 -0.64002 -0.00026148 0.66377 0.00027118 0.023747 9.7019E-06 408.88223705219366 17.163 0.10356 17.163 17.118 17.222 0 46 26 2 0 0 0 0.59218 1 8424 8424 0.96228 0 1 1171200 + 49587 23626 33525 34291 57713 57713 0.018481370189874724 QILFLLLYRRL 11 Unmodified _QILFLLLYRRL_ 0 0 0 REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF REV__ENST00000507175.5_1_5:145838810-145843302:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 724.4612426757812 2 724.461022 1446.90749 NaN NaN NaN NaN NaN NaN NaN 98.439 1 98.439 97.939 98.939 0 0 0 0 0.9435 1 54368 54368 0 0 1 + 49588 28097 33526 34292 57714 57714 0.20191314512840108 QILIGLIHL 9 Unmodified _QILIGLIHL_ 0 0 0 ENSG00000166961|ENST00000405633|MS4A15 ENSG00000166961|ENST00000405633|MS4A15 ENSG00000166961|ENST00000405633|MS4A15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.8140869140625 2 510.334227 1018.6539 0.97441 0.00049727 -1.0122 -0.00051658 -0.03782 -1.9301E-05 510.33368732015504 96.146 0.27449 89.971 89.767 90.041 -6.1757 35 16 3 0 0 0 0.12572 1 63660 63660 32.117 1.8922 1 16329000 49589 7557 33527 34293 57715 57715 0.1453208713337517 QILIPFPNL 9 Unmodified _QILIPFPNL_ 0 0 0 REV__ENSG00000139160|ENST00000357721|ETFBKMT REV__ENSG00000139160|ENST00000357721|ETFBKMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.8179931640625 2 527.81841 1053.62227 0.47006 0.00024811 0.9673 0.00051056 1.4374 0.00075866 527.8189832185666 65.319 0.38788 59.143 58.897 59.285 -6.1757 36 21 2 0 0 0 0.087258 1 42321 42321 36.044 0 1 60736000 + 49590 20390 33528 34294 57716 57716 0.09760094379430484 QILKSSLIGF 10 Unmodified _QILKSSLIGF_ 0 0 0 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 REV__nc|ENSG00000172139|Q4G0N8-2|SLC9C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3338623046875 2 553.334424 1104.6543 NaN NaN NaN NaN NaN NaN NaN 87.369 1 86.865 86.365 87.365 -0.50423 0 0 0 0.98857 1 47792 47792 3.9444 1.6417 1 + 49591 22628 33529 34295 57717 57717 0.10615462062582992 QILNGKQTF 9 Unmodified _QILNGKQTF_ 0 0 0 REV__ENSG00000196724|ENST00000396147|ZNF418 REV__ENSG00000196724|ENST00000396147|ZNF418 MSMS AL20221201_MKP_PDAC_01 4 350.1971435546875 3 350.197708 1047.57129 NaN NaN NaN NaN NaN NaN NaN 18.381 1 15.76 15.26 16.26 -2.6215 0 0 0 0.73776 1 9677 9677 8.1555 0.54658 1 + 49592 23864 33530 34296 57718 57718 0.049411453345555856 QILPITRPF 9 Unmodified _QILPITRPF_ 0 0 0 REV__ENST00000310645.9_1_21:47546143-47549402:+|nuORF REV__ENST00000310645.9_1_21:47546143-47549402:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8296508789062 2 542.829309 1083.64407 0.24492 0.00013295 0.48283 0.00026209 0.72775 0.00039504 542.8295828499173 75.071 1.2807 75.117 74.366 75.647 0.045959 77 59 2 0 0 0 0.11784 2 41536 41536;41648 34.102 0 1 3025000 + 49593 25417 33531 34297 57719;57720 57719 0.10558899127977384 QILPVERSCL 10 Unmodified _QILPVERSCL_ 0 0 0 REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP REV__nc|ENSG00000153820|Q2M3C7-2|SPHKAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3199462890625 2 579.320991 1156.62743 NaN NaN NaN NaN NaN NaN NaN 61.289 1 61.245 60.745 61.745 -0.04351 0 0 0 0.59691 1 33446 33446 21.537 4.5947 1 + 49594 21186 33532 34298 57721 57721 0.05538030179741327 QILQKNLQL 9 Unmodified _QILQKNLQL_ 0 0 0 REV__ENSG00000116882|ENST00000325945|HAO2 REV__ENSG00000116882|ENST00000325945|HAO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3384399414062 2 549.337498 1096.66044 NaN NaN NaN NaN NaN NaN NaN 74.411 1 74.457 73.957 74.957 0.045959 0 0 0 0.098496 1 41016 41016 48.346 0.75146 1 + 49595 19071 33533 34299 57722 57722 0.11597980294095578 QINKCNPA 8 Unmodified _QINKCNPA_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|159|3|sense;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|34|2|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|159|3|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|159|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2225646972656 2 444.22382 886.433086 -0.40564 -0.00018019 -1.2414 -0.00055145 -1.647 -0.00073165 444.22301643741446 48.662 0.29645 48.662 48.511 48.808 0 30 13 3 0 0 0 0.79669 1 26692 26692 8.5933 0.68312 1 3771700 49596 15959 33534 34300 57723 57723 -0.01467301185573433 QIPLLEQKVLI 11 Unmodified _QIPLLEQKVLI_ 0 0 0 ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA ENSG00000151611|ENST00000649156|MMAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.4112548828125 2 647.410663 1292.80677 1.4797 0.00095798 -2.0268 -0.0013122 -0.54715 -0.00035423 647.409137443597 104.74 0.14882 98.569 98.513 98.662 -6.1757 26 17 2 0 0 0 0.73115 1 70123 70123 1.3295 0.13619 1 9482900 49597 6126 33535 34301 57724 57724 0.1720823773932807 QIQDKNILWT 10 Unmodified _QIQDKNILWT_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.7557373046875 2 629.843145 1257.67174 0.12076 7.6061E-05 -0.7722 -0.00048636 -0.65143 -0.0004103 630.3453531124457 70.755 0.23782 70.277 70.173 70.411 -0.47735 15 11 2 0 0 0 0.2362 1 38719 38719 7.609 2.3121 1 1066700 + 49598 23082 33536 34302 57725 57725 0.05320757597564807 QIRDTLEVSEF 11 Unmodified _QIRDTLEVSEF_ 0 0 0 ENSG00000137825|ENST00000260386|ITPKA ENSG00000137825|ENST00000260386|ITPKA ENSG00000137825|ENST00000260386|ITPKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3424682617188 2 668.840799 1335.66705 0.86767 0.00058034 -0.93115 -0.00062279 -0.063478 -4.2457E-05 668.839816063739 102.54 0.081139 96.363 96.316 96.397 -6.1757 13 8 2 0 0 0 0.59689 1 68805 68805 11.495 0.67078 1 6584700 49599 4977 33537 34303 57726 57726 0.012638286641276864 QIRDVQETL 9 Unmodified _QIRDVQETL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2926635742188 2 551.29857 1100.58259 NaN NaN NaN NaN NaN NaN NaN 34.567 1 34.567 34.067 35.067 0 0 0 0 0.055406 1 18218 18218 69.105 19.172 1 49600 7248 33538 34304 57727 57727 0.03631922638055585 QIRGRAPI 8 Unmodified _QIRGRAPI_ 0 0 0 nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7825012207031 2 455.782693 909.550834 NaN NaN NaN NaN NaN NaN NaN 102.72 1 102.68 102.18 103.18 -0.047928 0 0 0 0.97444 1 57054 57054 0.69038 0 1 49601 16134 33539 34305 57728 57728 0.09244019465393194 QIRKKMMEI 9 Unmodified _QIRKKMMEI_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000472161.1_1_18:57817108-57817555:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8907165527344 3 392.891233 1175.65187 0.37291 0.00014651 -1.2843 -0.00050457 -0.91135 -0.00035806 393.22501406468956 26.07 0.36426 23.119 22.955 23.319 -2.9511 47 21 3 0 0 0 0.2546 1 14290 14290 19.362 11.417 1 20836000 49602 5696 33540 34306 57729 57729 0.07106967061599789 QIRLAAALLIV 11 Unmodified _QIRLAAALLIV_ 0 0 0 REV__ENSG00000120254|ENST00000367321|MTHFD1L REV__ENSG00000120254|ENST00000367321|MTHFD1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1180.973266601562 1 1180.7776 1179.77033 2.3685 0.0027967 0.36124 0.00042655 2.7297 0.0032232 1181.7777668179228 94.465 0.10617 94.479 94.41 94.516 0.014244 5 3 2 0 0 0 0.29817 1 52466 52466 4.897 1.3005 1 2058600 + 49603 19233 33541 34307 57730 57730 0.18763405633239927 QIRRKLRIEKR 11 Unmodified _QIRRKLRIEKR_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3280639648438 3 499.326709 1494.9583 NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.2 103.7 104.7 -0.048737 0 0 0 0.9435 1 57881 57881 0 0 1 49604 3575 33542 34308 57731 57731 0.230616566103663 QIRTNGSAL 9 Unmodified _QIRTNGSAL_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2683410644531 2 480.267073 958.519593 -0.067193 -3.227E-05 1.4162 0.00068014 1.349 0.00064787 480.2677881735921 25.676 0.33849 22.724 22.518 22.857 -2.9511 34 18 2 0 0 0 0.011671 2 14122 14011;14122 75.761 14.403 1 16154000 49605 8706 33543 34309 57732;57733 57733 0.03867401640661683 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000548088.1_1_12:52632481-52635423:+|nuORF CON__P05787;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 961.5180053710938 1 961.520053 960.512776 0.71015 0.00068282 -0.0083829 -8.0603E-06 0.70176 0.00067476 961.5197491595685 54.283 0.30736 54.283 54.132 54.44 0 30 13 3 0 0 0 0.0086904 2 30084 30084;30194 107.19 39.106 1 6532500 + 49606 165;199;150 33544 34310 57734;57735 57734 0.030940439694290944 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000548088.1_1_12:52632481-52635423:+|nuORF CON__P05787;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2633666992188 2 481.263665 960.512776 0.89881 0.00043256 0.76451 0.00036793 1.6633 0.00080049 481.26417056259595 54.299 0.32967 54.299 54.132 54.462 0 39 14 5 0 0 0 0.010818 2 30093 30093;30213 78.149 23.376 1 8818900 + 49607 165;199;150 33544 34310 57736;57737 57736 0.030940439694290944 QISDTSVVL 9 Unmodified _QISDTSVVL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000430398.2_1_1:73570714-73571443:+|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000512037.2_1_4:103650201-103650651:-|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000548088.1_1_12:52632481-52635423:+|nuORF CON__P05787;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7 CON__P05787 MSMS AL20221201_MKP_PDAC_01 4 481.2637329101562 2 481.263665 960.512776 NaN NaN NaN NaN NaN NaN NaN 62.407 1 56.231 55.731 56.731 -6.1757 0 0 0 0.047623 1 40265 40265 58.679 14.821 1 + 49608 165;199;150 33544 34310 57738 57738 0.030940439694290944 QISPFLWM 8 Unmodified _QISPFLWM_ 0 0 0 ENST00000456853.1_1_3:29628670-29781292:+|nuORF ENST00000456853.1_1_3:29628670-29781292:+|nuORF ENST00000456853.1_1_3:29628670-29781292:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2636413574219 2 511.262413 1020.51027 0.81668 0.00041754 0.86536 0.00044243 1.682 0.00085996 511.2627904671981 54.081 0.64261 54.081 53.797 54.44 0 128 29 6 0 0 0 0.76266 1 30172 30172 11.64 0.81637 1 912480000 49609 13603 33545 34311 57739 57739 0.0008391703076995327 QITERIYI 8 Unmodified _QITERIYI_ 0 0 0 ENST00000377861.4_3_13:67783303-67783480:-|nuORF ENST00000377861.4_3_13:67783303-67783480:-|nuORF ENST00000377861.4_3_13:67783303-67783480:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2966918945312 2 518.295299 1034.57605 NaN NaN NaN NaN NaN NaN NaN 69.523 1 69.554 69.054 70.054 0.030914 0 0 0 0.80403 1 38221 38221 23.148 3.8914 1 49610 12533 33546 34312 57740 57740 0.06014029477319127 QIVDVFMEY 9 Oxidation (M) _QIVDVFM(Oxidation (M))EY_ QIVDVFM(1)EY QIVDVFM(52)EY 0 0 1 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;ENST00000466513.1_1_17:57742174-57744343:+|nuORF;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.271728515625 2 580.270632 1158.52671 0.61434 0.00035648 1.2694 0.00073661 1.8838 0.0010931 580.2714202790986 73.764 0.56654 73.764 73.379 73.945 0 62 25 4 0 0 0 0.03568 2 40957 40957;41060 52.268 44.358 1 2035800 49611 5318;130 33547 34313 57741;57742 57741 7 -0.04621046593797473 QIVEILTAY 9 Unmodified _QIVEILTAY_ 0 0 0 nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2979125976562 2 525.297507 1048.58046 -0.93234 -0.00048975 -0.14578 -7.6579E-05 -1.0781 -0.00056633 525.2973493941711 77.809 0.29056 77.326 77.101 77.391 -0.4826 23 12 2 0 0 0 0.042911 1 42555 42555 48.346 16.04 1 2089900 49612 4387 33548 34314 57743 57743 0.05811493900228015 QIVIDSLKI 9 Unmodified _QIVIDSLKI_ 0 0 0 REV__ENSG00000134258|ENST00000369458|VTCN1 REV__ENSG00000134258|ENST00000369458|VTCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8228149414062 2 514.82115 1027.62775 1.0485 0.00053978 0.33273 0.0001713 1.3812 0.00071107 514.8212578570248 79.475 1.619 73.299 72.37 73.989 -6.1757 161 96 2 0 0 0 0.07087 1 51633 51633 39.95 1.7741 1 14663000 + 49613 19970 33549 34315 57744 57744 0.1150377317121638 QIWQQLEL 8 Unmodified _QIWQQLEL_ 0 0 0 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2857055664062 2 529.287474 1056.5604 0.88247 0.00046708 -2.383 -0.0012613 -1.5006 -0.00079423 529.2860372212641 39.134 0.37015 34.683 34.488 34.858 -4.4509 37 23 2 0 0 0 0.63229 1 23214 23214 23.148 0.41214 1 19733000 49614 3782 33550 34316 57745 57745 0.034377429602727716 QKAEPEVEVF 10 Unmodified _QKAEPEVEVF_ 0 0 0 REV__ENSG00000100347|ENST00000350028|SAMM50 REV__ENSG00000100347|ENST00000350028|SAMM50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5372009277344 3 392.536278 1174.587 1.2594 0.00049435 1.4279 0.0005605 2.6873 0.0010549 392.5368650561853 21.894 0.33942 19.159 18.995 19.335 -2.7348 45 19 3 0 0 0 0.57893 1 11721 11721 14.957 4.0582 1 3476600 + 49615 18048 33551 34317 57746 57746 0.006693870609524311 QKALFSIGFP 10 Unmodified _QKALFSIGFP_ 0 0 0 ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11 ENST00000471702.2_2_3:132339980-132400782:-|nuORF ENST00000471702.2_2_3:132339980-132400782:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8779296875 3 369.878087 1106.61243 0.18548 6.8607E-05 -0.47319 -0.00017502 -0.28771 -0.00010642 369.8777456447935 48.926 0.25073 48.882 48.753 49.004 -0.04369 30 12 3 0 0 0 0.5802 1 26402 26402 12.175 0 1 8019300 49616 10671 33552 34318 57747 57747 0.0633890637402601 QKAPRHPLA 9 Unmodified _QKAPRHPLA_ 0 0 0 ENSG00000163357|ENST00000295542|DCST1;nc|ENSG00000163357|Q5T197-3|DCST1 ENSG00000163357|ENST00000295542|DCST1 ENSG00000163357|ENST00000295542|DCST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3023986816406 2 509.30125 1016.58795 NaN NaN NaN NaN NaN NaN NaN 70.377 1 69.898 69.398 70.398 -0.47903 0 0 0 0.36554 1 38490 38490 21.747 3.6003 1 49617 6983 33553 34319 57748 57748 0.08031691011171915 QKCADYSENKY 11 Unmodified _QKCADYSENKY_ 0 0 0 REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55 REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.7945556640625 2 674.795534 1347.57652 -0.59234 -0.00039971 -0.55044 -0.00037143 -1.1428 -0.00077114 674.7953347866796 26.081 0.22187 26.081 25.965 26.187 0 33 12 4 0 0 0 0.59689 1 13375 13375 11.495 1.4208 1 3275600 + 49618 29846 33554 34320 57749 57749 -0.08336963655779073 QKCNIFSLIF 10 Unmodified _QKCNIFSLIF_ 0 0 0 nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4 nc|ENSG00000005471|P21439-3|ABCB4 nc|ENSG00000005471|P21439-3|ABCB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.8265991210938 2 606.825909 1211.63727 0.1195 7.2517E-05 0.40151 0.00024365 0.52101 0.00031617 606.8266045801433 67.072 0.33012 67.072 66.896 67.226 0 33 14 3 0 0 0 0.66569 1 37475 37475 6.7232 1.4925 1 2332800 49619 310 33555 34321 57750 57750 0.039912181850922934 QKCRSISEEW 10 Unmodified _QKCRSISEEW_ 0 0 0 ENST00000542452.1_1_11:73727738-73744892:-|nuORF ENST00000542452.1_1_11:73727738-73744892:-|nuORF ENST00000542452.1_1_11:73727738-73744892:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2281188964844 3 422.536283 1264.58702 -0.00070544 -2.9808E-07 1.4335 0.00060571 1.4328 0.00060541 422.53695850981285 54.28 0.1609 54.213 54.101 54.262 -0.066936 10 7 2 0 0 0 0.23996 1 29473 29473 1.5923 0.48253 1 1204300 49620 15059 33556 34322 57751 57751 -0.03468936210697393 QKDLRTYRR 9 Unmodified _QKDLRTYRR_ 0 0 0 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.9036560058594 3 412.570427 1234.68945 -0.17705 -7.3047E-05 3.4307 0.0014154 3.2537 0.0013424 412.57200895605365 29.726 0.33768 29.756 29.632 29.97 0.030106 27 13 4 0 0 0 0.58145 1 15625 15625 2.4985 0.24576 1 6107000 49621 1212 33557 34323 57752 57752 0.08149517643050785 QKDVALLY 8 Unmodified _QKDVALLY_ 0 0 0 REV__nc|ENSG00000143355|Q9NQ69-3|LHX9 REV__nc|ENSG00000143355|Q9NQ69-3|LHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2710266113281 2 475.271293 948.528032 0.73263 0.0003482 0.45096 0.00021433 1.1836 0.00056253 475.2712970890679 64.501 0.28109 64.016 63.821 64.102 -0.48512 18 12 2 0 0 0 0.78849 1 35141 35141 9.3474 1.4373 1 1285000 + 49622 18530 33558 34324 57753 57753 0.05170955557287016 QKEDTDHNQ 9 Unmodified _QKEDTDHNQ_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.244384765625 2 557.741616 1113.46868 0.59931 0.00033426 1.79 0.00099835 2.3893 0.0013326 557.7419452245515 94.11 0.33026 93.689 93.479 93.81 -0.42043 50 17 4 0 0 0 0.52067 1 51388 51388 6.2058 1.4498 1 1906400 49623 16307 33559 34325 57754 57754 -0.08351592194867408 QKGAATSA 8 Unmodified _QKGAATSA_ 0 0 0 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 REV__nc|ENSG00000101343|Q9BZJ0-3|CRNKL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1965026855469 2 367.195585 732.376617 NaN NaN NaN NaN NaN NaN NaN 36.057 1 36.057 35.557 36.557 0 0 0 0 0.97444 1 19101 19101 2.5775 0 1 + 49624 29539 33560 34326 57755 57755 -0.00027605750562997855 QKGFCALS 8 Unmodified _QKGFCALS_ 0 0 0 REV__ENST00000493635.1_1_6:36981758-36982189:+|nuORF REV__ENST00000493635.1_1_6:36981758-36982189:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.5496826171875 2 427.215463 852.416374 NaN NaN NaN NaN NaN NaN NaN 18.411 1 18.434 17.934 18.934 0.023106 0 0 0 0.97444 1 9230 9230 0.69038 0 1 + 49625 27924 33561 34327 57756 57756 -0.015738020715161838 QKIACVLPAL 10 Unmodified _QKIACVLPAL_ 0 0 0 CON__Q29RQ1 CON__Q29RQ1 CON__Q29RQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.323486328125 2 528.31772 1054.62089 1.1984 0.00063314 0.44046 0.0002327 1.6389 0.00086585 528.317377179859 96.932 0.42259 90.756 90.622 91.044 -6.1757 70 24 5 0 0 0 0.25982 1 64305 64305 10.824 4.1008 1 101740000 + 49626 190 33562 34328 57757 57757 0.0957613701898481 QKISIGLVLLK 11 Unmodified _QKISIGLVLLK_ 0 0 0 ENST00000474024.5_1_20:17587690-17587750:+|nuORF ENST00000474024.5_1_20:17587690-17587750:+|nuORF ENST00000474024.5_1_20:17587690-17587750:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 606.4068603515625 2 606.407924 1210.80129 NaN NaN NaN NaN NaN NaN NaN 92.398 1 86.222 85.722 86.722 -6.1757 0 0 0 0.93969 1 61103 61103 2.7352 0 1 49627 13929 33563 34329 57758 57758 0.20432558947481994 QKKETGKEEPD 11 Unmodified _QKKETGKEEPD_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8213500976562 2 644.822606 1287.63066 -0.85001 -0.00054811 -1.0133 -0.00065337 -1.8633 -0.0012015 644.8219701103698 28.026 0.71739 28.026 27.7 28.418 0 159 39 6 0 0 0 0.5551 1 14454 14454 13.615 0.74226 1 1730999999.9999998 + 49628 27796 33564 34330 57759 57759 -0.0016504823256582313 QKKETGKEEPD 11 Unmodified _QKKETGKEEPD_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8223876953125 2 644.822606 1287.63066 0.38787 0.00025011 0.58016 0.0003741 0.96803 0.00062421 644.8228261358388 28.038 0.26665 27.992 27.821 28.088 -0.046408 23 9 3 0 0 0 0.35681 1 14440 14440 23.79 12.295 1 18815000 + 49629 27796 33564 34330 57760 57760 -0.0016504823256582313 QKKETGKEEPD 11 Unmodified _QKKETGKEEPD_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.323486328125 2 644.822606 1287.63066 0.37175 0.00023971 0.33677 0.00021716 0.70852 0.00045687 644.8228358274916 27.887 0.31072 27.917 27.75 28.061 0.029564 33 12 4 0 0 0 0.5551 1 14473 14473 13.615 3.4643 1 40299000 + 49630 27796 33564 34330 57761 57761 -0.0016504823256582313 QKKETGKEEPD 11 Unmodified _QKKETGKEEPD_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 644.822606 1287.63066 0.38787 0.00025011 0.58016 0.0003741 0.96803 0.00062421 644.8228261358388 28.038 0.26665 27.992 27.821 28.088 -0.046408 0.037622 0.00015668 NaN 23.79 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 18815000 + 49631 27796 33564 34330 -0.0016504823256582313 QKKETGKEEPD 11 Unmodified _QKKETGKEEPD_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 644.822606 1287.63066 0.37175 0.00023971 0.33677 0.00021716 0.70852 0.00045687 644.8228358274916 27.887 0.31072 27.917 27.75 28.061 0.029564 -0.037622 -0.0001572 NaN 23.79 33 12 4 NaN NaN NaN NaN 0 NaN NaN 0 40299000 + 49632 27796 33564 34330 -0.0016504823256582313 QKKGKLLL 8 Unmodified _QKKGKLLL_ 0 0 0 REV__ENST00000311275.11_1_20:45838578-45838890:-|nuORF REV__ENST00000311275.11_1_20:45838578-45838890:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.3237609863281 2 464.32112 926.627687 2.5956 0.0012052 1.5895 0.00073804 4.1851 0.0019432 464.3226557981801 96.888 0.26263 96.881 96.724 96.986 -0.007019 21 9 3 0 0 0 0.80311 1 53803 53803 4.756 0 1 2478300 + 49633 25424 33565 34331 57762 57762 0.16143817961904006 QKKKKKKK 8 Unmodified _QKKKKKKK_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2;AluSz6_dup36815|chr15:60362892-60363058:+|3.018323961167338|0.0012375329650786|11.25|178.0|7|3|sense;L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|150|3|sense;ENST00000323571.8_1_17:38438263-38438389:+|nuORF;AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|7|2|sense;ENST00000265340.11_1_5:134364111-134364312:-|nuORF;ENSG00000129292|ENST00000395386|PHF20L1;ENSG00000111300|ENST00000261745|NAA25;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1 ENSG00000167978|ENST00000301740|SRRM2;ENSG00000129292|ENST00000395386|PHF20L1;ENSG00000111300|ENST00000261745|NAA25;ENST00000528205.1_1_11:57472131-57479651:-|nuORF;nc|ENSG00000070814|Q13428-2|TCOF1 ENSG00000167978|ENST00000301740|SRRM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1044.076538085938 1 1043.74116 1042.73388 -0.43846 -0.00045764 1.0303 0.0010753 0.59181 0.00061769 1044.7416396786211 35.017 0.34166 34.795 34.575 34.917 -0.2224 18 14 2 0 0 0 8.7369 1 18262 18262 0 0 1 1823300 49634 7692;2777;1041;4127;14852 33566 34332 57763 57763 0.2142257352722936 QKKKLKRKKN 10 Unmodified _QKKKLKRKKN_ 0 0 0 REV__ENSG00000104714|ENST00000262109|ERICH1 REV__ENSG00000104714|ENST00000262109|ERICH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1299.279174804688 1 1298.8743 1297.86702 1.1329 0.0014715 -0.23019 -0.00029898 0.90274 0.0011725 1298.8750078573896 37.386 0.16468 33.102 32.955 33.12 -4.2835 10 9 2 0 0 0 0.24008 1 21855 21855 0 0 1 2655200 + 49635 18367 33567 34333 57764 57764 0.2300039291308167 QKKRKKRKHL 10 Unmodified _QKKRKKRKHL_ 0 0 0 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.2994384765625 2 675.451854 1348.88916 NaN NaN NaN NaN NaN NaN NaN 102.42 1 102.3 101.8 102.8 -0.11613 0 0 0 1.0061 1 55880 55880 0 0 1 49636 10300 33568 34334 57765 57765 0.22866617381509968 QKKWLEFYYSW 11 Unmodified _QKKWLEFYYSW_ 0 0 0 ENST00000263955.8_1_2:197001783-197001954:-|nuORF ENST00000263955.8_1_2:197001783-197001954:-|nuORF ENST00000263955.8_1_2:197001783-197001954:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 789.89404296875 2 789.393002 1576.77145 1.4618 0.001154 -2.4914 -0.0019667 -1.0296 -0.00081275 789.8919077516804 96.356 0.1813 90.18 90.056 90.237 -6.1757 14 10 2 0 0 0 0.53952 1 63846 63846 14.405 2.1647 1 11657000 49637 11300 33569 34335 57766 57766 0.006135752115369542 QKLALQEFL 9 Unmodified _QKLALQEFL_ 0 0 0 ENST00000427024.5_1_2:132222614-132229673:-|nuORF ENST00000427024.5_1_2:132222614-132229673:-|nuORF ENST00000427024.5_1_2:132222614-132229673:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2662963867188 2 545.318774 1088.623 0.18761 0.00010231 0.4821 0.0002629 0.6697 0.0003652 545.318997525332 94.431 0.25401 94.01 93.908 94.162 -0.42044 22 13 2 0 0 0 0.21847 1 51570 51570 1.6526 0 1 371680 49638 13188 33570 34336 57767 57767 0.08222889028479585 QKLFHLHI 8 Unmodified _QKLFHLHI_ 0 0 0 REV__nc|ENSG00000148634|Q5GLZ8-5|HERC4 REV__nc|ENSG00000148634|Q5GLZ8-5|HERC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3084106445312 2 518.308544 1034.60253 1.6104 0.00083466 -1.0774 -0.00055844 0.53292 0.00027622 518.30784083296 104.6 0.22171 98.426 98.275 98.497 -6.1757 24 14 2 0 0 0 0.80975 1 69970 69970 0.79363 0.10326 1 36845000 + 49639 29695 33571 34337 57768 57768 0.08661763159329894 QKLLARLLV 9 Unmodified _QKLLARLLV_ 0 0 0 ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A ENSG00000185038|ENST00000389758|MROH2A MSMS AL20221201_MKP_PDAC_01 4 527.3596801757812 2 527.360776 1052.707 NaN NaN NaN NaN NaN NaN NaN 104.54 1 98.367 97.867 98.867 -6.1757 0 0 0 0.85737 1 70007 70007 0.6015 0 1 49640 9322 33572 34338 57769 57769 0.1827546491601879 QKLLEETQL 9 Unmodified _QKLLEETQL_ 0 0 0 ENSG00000085872|ENST00000546361|CHERP;ENST00000546538.1_1_19:16643407-16652813:-|nuORF ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8772888183594 3 367.876523 1100.60774 -0.038977 -1.4339E-05 2.8123 0.0010346 2.7734 0.0010203 367.8774278456664 35.046 0.19804 35.073 34.924 35.122 0.027401 15 8 2 0 0 0 0.43515 1 18485 18485 10.8 1.4164 1 1104400 49641 1423 33573 34339 57770 57770 0.061459774406330325 QKLPHKLPP 9 Unmodified _QKLPHKLPP_ 0 0 0 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 ENSG00000155085|ENST00000424296|AK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.33056640625 2 529.329476 1056.6444 1.5801 0.00083641 3.6751 0.0019453 5.2552 0.0027817 529.3322386433836 104.46 0.051811 98.28 98.262 98.313 -6.1757 7 5 2 0 0 0 0.57757 1 69956 69956 0.52476 0 1 6154100 49642 6366 33574 34340 57771 57771 0.11834318847832037 QKLPPQNFV 9 Unmodified _QKLPPQNFV_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000575656.5_1_16:24960717-24971282:-|nuORF;nc|ENSG00000140750|Q68EM7-3|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 nc|ENSG00000140750|Q68EM7-2|ARHGAP17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5386657714844 3 357.537953 1069.59203 1.156 0.0004133 1.3096 0.00046823 2.4655 0.00088153 357.5382085348535 46.87 0.35908 46.836 46.617 46.976 -0.033417 51 17 4 0 0 0 0.59218 1 25299 25299 0.96228 0 1 5326200 49643 5267 33575 34341 57772 57772 0.06001735714221468 QKLQELYL 8 Unmodified _QKLQELYL_ 0 0 0 REV__ENSG00000123933|ENST00000337190|MXD4 REV__ENSG00000123933|ENST00000337190|MXD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7999267578125 2 517.797675 1033.5808 0.81661 0.00042284 0.73808 0.00038218 1.5547 0.00080502 517.7981263887295 54.061 0.25192 54.061 53.945 54.197 0 17 11 2 0 0 0 0.44629 1 30003 30003 39.957 3.8303 1 3069900 + 49644 19408 33576 34342 57773 57773 0.06534913620089355 QKLYTWSFFHF 11 Unmodified _QKLYTWSFFHF_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.6914978027344 4 376.690944 1502.73467 0.20546 7.7395E-05 -0.35746 -0.00013465 -0.152 -5.7258E-05 376.94160596831455 39.009 0.39902 39.02 38.86 39.259 0.011456 49 18 4 0 0 0 0.73992 1 20851 20851 0.50596 0.41111 1 4617500 49645 15914 33577 34343 57774 57774 0.0034132338557810726 QKMQEKKKL 9 Unmodified _QKMQEKKKL_ 0 0 0 nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1829223632812 3 387.565514 1159.67471 0.076233 2.9545E-05 -2.6298 -0.0010192 -2.5536 -0.00098969 387.564346732621 28.484 0.076586 28.514 28.467 28.544 0.029566 4 2 2 0 0 0 0.21874 1 14812 14812 1.1933 0 1 453090 49646 7428 33578 34344 57775 57775 0.10126309450720328 QKMVVKYPDK 10 Unmodified _QKMVVKYPDK_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MSMS AL20221201_MKP_PDAC_01 4 412.5653076171875 3 412.565403 1234.67438 NaN NaN NaN NaN NaN NaN NaN 77.041 1 70.866 70.366 71.366 -6.1757 0 0 0 0.8671 1 50388 50388 8.4443 0.49891 1 + 49647 20002 33579 34345 57776 57776 0.06642889730869683 QKNDSDCGVF 10 Unmodified _QKNDSDCGVF_ 0 0 0 nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 nc|ENSG00000119231|Q96HI0-2|SENP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7366943359375 2 556.737488 1111.46042 0.50613 0.00028178 -1.1918 -0.00066354 -0.68571 -0.00038176 556.7364310009729 82.251 0.42231 76.075 75.883 76.305 -6.1757 30 22 2 0 0 0 0.48505 1 54017 54017 17.113 1.8644 1 9295500 49648 3419 33580 34346 57777 57777 -0.09084862435838659 QKNDSQLVI 9 Unmodified _QKNDSQLVI_ 0 0 0 nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1;nc|ENSG00000187239|Q96RU3-4|FNBP1 nc|ENSG00000187239|Q96RU3-3|FNBP1 nc|ENSG00000187239|Q96RU3-3|FNBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7889404296875 2 522.787838 1043.56112 NaN NaN NaN NaN NaN NaN NaN 72.597 1 72.121 71.621 72.621 -0.47609 0 0 0 0.41346 1 39729 39729 19.257 1.122 1 49649 9546 33581 34347 57778 57778 0.04108537609317864 QKNKNVEIY 9 Unmodified _QKNKNVEIY_ 0 0 0 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 ENSG00000187715|ENST00000405109|KBTBD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2113952636719 3 379.208384 1134.60332 NaN NaN NaN NaN NaN NaN NaN 44.648 1 44.332 43.832 44.832 -0.31585 0 0 0 0.76439 1 23827 23827 4.5289 0 1 49650 9585 33582 34348 57779 57779 0.04140513017705416 QKPVAGGY 8 Unmodified _QKPVAGGY_ 0 0 0 REV__nc|ENSG00000119650|Q96FT9-3|IFT43 REV__nc|ENSG00000119650|Q96FT9-3|IFT43 MSMS AL20221201_MKP_PDAC_01 4 410.240234375 2 410.221603 818.428653 NaN NaN NaN NaN NaN NaN NaN 34.984 1 30.889 30.389 31.389 -4.0951 0 0 0 0.95607 1 20240 20240 9.3474 2.6243 1 + 49651 28745 33583 34349 57780 57780 0.012175576631875629 QKPYHCKEC 9 Unmodified _QKPYHCKEC_ 0 0 0 ENSG00000196646|ENST00000343979|ZNF136;ENST00000464860.1_1_19:12296590-12298813:+|nuORF ENSG00000196646|ENST00000343979|ZNF136 ENSG00000196646|ENST00000343979|ZNF136 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1736755371094 3 379.172288 1134.49503 NaN NaN NaN NaN NaN NaN NaN 83.958 1 83.958 83.458 84.458 0 0 0 0 0.84737 1 46554 46554 0.96228 0 1 49652 9853 33584 34350 57781 57781 -0.06683317828719737 QKRCWKHCF 9 Unmodified _QKRCWKHCF_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.535400390625 3 412.535672 1234.58519 NaN NaN NaN NaN NaN NaN NaN 15.819 1 15.805 15.305 16.305 -0.014067 0 0 0 0.85798 1 7781 7781 0.23584 0.15249 1 + 49653 22306 33585 34351 57782 57782 -0.022722237096559184 QKRKQFAESD 10 Unmodified _QKRKQFAESD_ 0 0 0 REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198838|ENST00000634891|RYR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8814697265625 3 412.882559 1235.62585 NaN NaN NaN NaN NaN NaN NaN 33.969 1 33.998 33.498 34.498 0.028934 0 0 0 1.0004 1 17889 17889 0.62683 0.53198 1 + 49654 24073 33586 34352 57783 57783 0.01746112415321477 QKRKYDLM 8 Unmodified _QKRKYDLM_ 0 0 0 REV__ENSG00000144224|ENST00000272638|UBXN4 REV__ENSG00000144224|ENST00000272638|UBXN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.0009765625 2 541.294776 1080.575 -0.6032 -0.00032651 -1.5053 -0.00081482 -2.1085 -0.0011413 541.2930417159475 101.93 0.14764 101.88 101.76 101.9 -0.045853 8 4 3 0 0 0 8.7369 1 56566 56566 2.3027 0 1 3577000 + 49655 20693 33587 34353 57784 57784 0.03793491836768226 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2655334472656 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 2.9597 1 2.9597 2.4597 3.4597 0 0 0 0 0.94307 1 1436 1436 0.08335 0 1 49656 11267 33588 34354 57785 57785 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.265869140625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 4.6118 1 4.6118 4.1118 5.1118 0 0 0 0 0.94307 1 2220 2220 0.08335 0 1 49657 11267 33588 34354 57786 57786 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.26611328125 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 8.4433 1 8.4433 7.9433 8.9433 0 0 0 0 0.94307 1 4026 4026 0.08335 0 1 49658 11267 33588 34354 57787 57787 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2646789550781 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 83.63 1 83.63 83.13 84.13 0 0 0 0 0.94165 1 46376 46376 0.45452 0 1 49659 11267 33588 34354 57788 57788 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2675170898438 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 94.917 1 94.917 94.417 95.417 0 0 0 0 0.94307 1 52469 52469 0.08335 0 1 49660 11267 33588 34354 57789 57789 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2660522460938 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 95.549 1 95.549 95.049 96.049 0 0 0 0 0.94307 1 52812 52812 0.08335 0 1 49661 11267 33588 34354 57790 57790 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.265869140625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 0.62192 1 0.54863 0.048629 1.0486 -0.073289 0 0 0 0.94307 1 313 313 0.08335 0 1 49662 11267 33588 34354 57791 57791 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.265869140625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 1.324 1 1.2507 0.75071 1.7507 -0.07329 0 0 0 0.94307 1 663 663 0.08335 0 1 49663 11267 33588 34354 57792 57792 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2657165527344 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 3.1403 1 3.0683 2.5683 3.5683 -0.072029 0 0 0 0.94307 1 1545 1545 0.08335 0 1 49664 11267 33588 34354 57793 57793 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2658996582031 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 3.38 1 3.308 2.808 3.808 -0.072029 0 0 0 0.94307 1 1663 1663 0.08335 0 1 49665 11267 33588 34354 57794 57794 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2662048339844 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 3.5994 1 3.5274 3.0274 4.0274 -0.072029 0 0 0 0.94307 1 1774 1774 0.08335 0 1 49666 11267 33588 34354 57795 57795 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2662353515625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 4.5125 1 4.4397 3.9397 4.9397 -0.072869 0 0 0 0.94307 1 2230 2230 0.08335 0 1 49667 11267 33588 34354 57796 57796 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.265869140625 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 4.8366 1 4.7638 4.2638 5.2638 -0.072869 0 0 0 0.94307 1 2391 2391 0.08335 0 1 49668 11267 33588 34354 57797 57797 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2663269042969 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 16.065 1 16.051 15.551 16.551 -0.014067 0 0 0 0.94307 1 7912 7912 0.08335 0 1 49669 11267 33588 34354 57798 57798 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2672424316406 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 95.812 1 95.444 94.944 95.944 -0.36814 0 0 0 0.94307 1 52331 52331 0.08335 0 1 49670 11267 33588 34354 57799 57799 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2678527832031 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 96.445 1 96.14 95.64 96.64 -0.30472 0 0 0 0.94307 1 52670 52670 0.08335 0 1 49671 11267 33588 34354 57800 57800 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2667541503906 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 0.99639 1 0.97577 0.47577 1.4758 -0.020623 0 0 0 0.94307 1 512 512 0.08335 0 1 49672 11267 33588 34354 57801 57801 0.1689555795353499 QKRLGVGKRVP 11 Unmodified _QKRLGVGKRVP_ 0 0 0 ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF ENST00000262544.6_1_20:18488293-18488443:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2660217285156 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 11.104 1 11.12 10.62 11.62 0.015327 0 0 0 0.94307 1 5485 5485 0.08335 0 1 49673 11267 33588 34354 57802 57802 0.1689555795353499 QKRLHWYYYYR 11 Unmodified _QKRLHWYYYYR_ 0 0 0 REV__nc|ENSG00000139926|Q96NE9-2|FRMD6 REV__nc|ENSG00000139926|Q96NE9-2|FRMD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.4298706054688 2 838.428242 1674.84193 NaN NaN NaN NaN NaN NaN NaN 66.722 1 66.722 66.222 67.222 0 0 0 0 0.9435 1 37212 37212 0 0 1 + 49674 20440 33589 34355 57803 57803 0.03150293319845332 QKRRRRRMLWH 11 Unmodified _QKRRRRRMLWH_ 0 0 0 REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF REV__ENST00000579674.1_1_17:27898877-27899117:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.9758911132812 2 811.973493 1621.93243 NaN NaN NaN NaN NaN NaN NaN 87.736 1 87.789 87.289 88.289 0.053352 0 0 0 0.9435 1 48796 48796 0 0 1 + 49675 22216 33590 34356 57804 57804 0.14634483887130045 QKRRRRVH 8 Unmodified _QKRRRRVH_ 0 0 0 ENST00000300591.10_1_18:44118269-44121845:-|nuORF ENST00000300591.10_1_18:44118269-44121845:-|nuORF ENST00000300591.10_1_18:44118269-44121845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2384948730469 3 379.239235 1134.69588 0.23625 8.9593E-05 -2.819 -0.0010691 -2.5827 -0.00097947 379.2376265624659 73.538 0.39727 73.582 73.337 73.734 0.043976 39 17 3 0 0 0 0.81031 1 40485 40485 0.45834 0.057624 1 2284800 49676 11553 33591 34357 57805 57805 0.13391500385137078 QKSAVRRRL 9 Unmodified _QKSAVRRRL_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MSMS AL20221201_MKP_PDAC_01 4 557.3536376953125 2 557.351806 1112.68906 NaN NaN NaN NaN NaN NaN NaN 103.86 1 97.679 97.179 98.179 -6.1757 0 0 0 0.84737 1 69596 69596 1.8442 0 1 49677 807 33592 34358 57806 57806 0.13722142713891117 QKSLLMTTK 9 Unmodified _QKSLLMTTK_ 0 0 0 REV__ENST00000479399.5_1_9:34613781-34614146:-|nuORF REV__ENST00000479399.5_1_9:34613781-34614146:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.305419921875 2 525.30481 1048.59507 NaN NaN NaN NaN NaN NaN NaN 45.002 1 44.98 44.48 45.48 -0.022064 0 0 0 0.32177 1 24159 24159 24.021 0 1 + 49678 20214 33593 34359 57807 57807 0.07271242776710096 QKSWIERAF 9 Unmodified _QKSWIERAF_ 0 0 0 nc|ENSG00000083067|Q9HCF6-10|TRPM3;nc|ENSG00000083067|Q9HCF6-8|TRPM3;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-11|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 nc|ENSG00000083067|Q9HCF6-10|TRPM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8769226074219 3 388.876857 1163.60874 1.5273 0.00059391 -2.1805 -0.00084795 -0.65326 -0.00025404 388.8758483753218 21.068 0.50966 18.375 18.08 18.59 -2.693 42 29 2 0 0 0 0.50598 1 11272 11272 7.1017 3.5147 1 6278300 49679 1356 33594 34360 57808 57808 0.03348236600186283 QKTRMKIVR 9 Unmodified _QKTRMKIVR_ 0 0 0 ENST00000456760.1_1_9:125448634-125449186:+|nuORF ENST00000456760.1_1_9:125448634-125449186:+|nuORF ENST00000456760.1_1_9:125448634-125449186:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.5739135742188 3 387.241254 1158.70193 NaN NaN NaN NaN NaN NaN NaN 19.13 1 16.474 15.974 16.974 -2.6564 0 0 0 0.84543 1 10111 10111 2.086 0.34373 1 49680 13601 33595 34361 57809 57809 0.12892837781760136 QKVIKLGVLPV 11 Unmodified _QKVIKLGVLPV_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.4012451171875 2 597.402641 1192.79073 -0.741 -0.00044268 -1.5501 -0.00092602 -2.2911 -0.0013687 597.4016184513484 103.39 0.16658 103.35 103.26 103.43 -0.047928 9 6 2 0 0 0 0.74203 1 57440 57440 0.30703 0 1 573390 49681 2227 33596 34362 57810 57810 0.2020457629307657 QKVQLAFLY 9 Unmodified _QKVQLAFLY_ 0 0 0 REV__nc|ENSG00000152767|Q9Y4F1-2|FARP1 REV__nc|ENSG00000152767|Q9Y4F1-2|FARP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2200317382812 3 370.54997 1108.62808 -0.26961 -9.9903E-05 1.5053 0.00055779 1.2357 0.00045789 370.88506813659234 37.07 0.31893 36.82 36.623 36.942 -0.2497 19 13 2 0 0 0 0.21798 1 19386 19386 0.26902 0 1 1337800 + 49682 21134 33597 34363 57811 57811 0.07811192891085739 QKYIEQGTKHF 11 Unmodified _QKYIEQGTKHF_ 0 0 0 REV__ENSG00000154710|ENST00000284957|RABGEF1 REV__ENSG00000154710|ENST00000284957|RABGEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 689.8568725585938 2 689.859326 1377.7041 NaN NaN NaN NaN NaN NaN NaN 53.624 1 53.561 53.061 54.061 -0.063423 0 0 0 0.93893 1 29096 29096 3.2813 1.4371 1 + 49683 21240 33598 34364 57812 57812 0.03035545000534512 QLAELAETR 9 Unmodified _QLAELAETR_ 0 0 0 REV__ENST00000555793.1_1_14:93275739-93276806:+|nuORF;REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5 REV__nc|ENSG00000066455|Q8TBA6-2|GOLGA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1030.06005859375 1 1030.55275 1029.54547 0.40207 0.00041435 -3.81 -0.0039264 -3.4079 -0.003512 1030.5509403678639 71.609 0.31566 71.133 70.95 71.266 -0.47609 14 12 2 0 0 0 0.21052 1 39150 39150 6.7232 0 1 526270 + 49684 28776;17403 33599 34365 57813 57813 0.031882510922514484 QLAELKEKY 9 Unmodified _QLAELKEKY_ 0 0 0 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 ENSG00000179562|ENST00000321407|GCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.31689453125 2 561.313689 1120.61282 2.0883 0.0011722 1.2711 0.00071351 3.3594 0.0018857 561.3143223378208 100.29 0.19393 100.26 100.18 100.38 -0.036301 17 6 4 0 0 0 0.16226 1 55711 55711 26.884 0.61551 1 49357000 49685 8843 33600 34366 57814 57814 0.05734281303239186 QLAENLVVI 9 Unmodified _QLAENLVVI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;PSMA3-ACTR10|3|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7989196777344 2 499.797675 997.580796 0.34514 0.0001725 1.593 0.00079616 1.9381 0.00096866 499.79853961629294 76.489 0.27071 76.489 76.341 76.612 0 18 10 2 0 0 0 0.2143 1 42507 42507 21.747 5.8995 1 485830 49686 4361 33601 34367 57815 57815 0.08190913620103402 QLAENLVVI 9 Unmodified _QLAENLVVI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;PSMA3-ACTR10|3|fusion ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7967224121094 2 499.797675 997.580796 -0.44243 -0.00022112 0.78813 0.00039391 0.3457 0.00017278 499.7979585279779 76.969 0.19669 76.49 76.343 76.54 -0.47945 10 8 2 0 0 0 0.59218 1 42148 42148 1.8442 0 1 304370 49687 4361 33601 34367 57816 57816 0.08190913620103402 QLAESVANV 9 Unmodified _QLAESVANV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7774658203125 2 465.748182 929.481811 -0.028543 -1.3294E-05 -0.43617 -0.00020315 -0.46471 -0.00021644 465.748204834802 41.042 0.24755 41.042 40.949 41.196 0 24 13 2 0 0 0 0.15672 1 22051 22051 20.454 7.9221 1 7575600 49688 6120 33602 34368 57817 57817 0.014248906551983964 QLAESVANV 9 Unmodified _QLAESVANV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7474060058594 2 465.748182 929.481811 0.76236 0.00035507 -0.49572 -0.00023088 0.26664 0.00012419 465.74811058975655 48.301 0.35133 43.067 42.821 43.172 -5.2339 38 20 2 0 0 0 0.0082353 2 29982 29982;30123 96.111 26.204 1 16741000 49689 6120 33602 34368 57818;57819 57818 0.014248906551983964 QLAFQVEQV 9 Unmodified _QLAFQVEQV_ 0 0 0 ENSG00000130787|ENST00000253083|HIP1R;nc|ENSG00000130787|O75146-2|HIP1R;ENST00000452196.6_1_12:123320097-123341792:+|nuORF;ENST00000535831.5_1_12:123319379-123341792:+|nuORF ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.283935546875 2 531.284931 1060.55531 0.3661 0.0001945 -0.56378 -0.00029953 -0.19767 -0.00010502 531.2848835763375 63.333 0.25845 63.333 63.146 63.405 0 18 10 2 0 0 0 0.016184 1 35294 35294 67.344 31.3 1 2341400 49690 4262 33603 34369 57820 57820 0.027454390976799914 QLAHIQALI 9 Unmodified _QLAHIQALI_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.8042297363281 2 503.805834 1005.59712 NaN NaN NaN NaN NaN NaN NaN 60.796 1 60.306 59.806 60.806 -0.48932 0 0 0 0.029091 1 33110 33110 67.344 2.1088 1 + 49691 167 33604 34370 57821 57821 0.09454039576849027 QLAIGVNEV 9 Unmodified _QLAIGVNEV_ 0 0 0 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7651672363281 2 471.766374 941.518196 0.71007 0.00033499 -0.1773 -8.3646E-05 0.53277 0.00025134 471.7657501992174 57.219 0.2593 57.219 57.111 57.371 0 17 11 2 0 0 0 0.2143 1 31865 31865 21.747 2.3076 1 1419400 49692 6188 33605 34371 57822 57822 0.04509767551905952 QLALDVEYL 9 Unmodified _QLALDVEYL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2;ENST00000478710.1_1_1:230825798-230827388:+|nuORF nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2881469726562 2 532.28714 1062.55973 0.32956 0.00017542 1.0004 0.0005325 1.33 0.00070792 532.2868426820366 78.434 0.44306 78.434 78.197 78.64 0 28 20 2 0 0 0 0.1773 1 43600 43600 25.399 2.663 1 1597200 49693 4740 33606 34372 57823 57823 0.030949035205594555 QLAMLYNNRE 10 Unmodified _QLAMLYNNRE_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.208251953125 3 417.876529 1250.60776 -0.44335 -0.00018526 -0.39978 -0.00016706 -0.84312 -0.00035232 417.8766296886611 21.998 1.5171 21.998 21.478 22.995 0 267 129 5 0 0 0 0.71276 1 11354 11354 0.62683 0 1 34852000 49694 3067 33607 34373 57824 57824 -0.007523458310515707 QLANQIYDLD 10 Unmodified _QLANQIYDLD_ 0 0 0 nc|ENSG00000071243|Q9NXR8-3|ING3 nc|ENSG00000071243|Q9NXR8-3|ING3 nc|ENSG00000071243|Q9NXR8-3|ING3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2003784179688 3 398.199666 1191.57717 NaN NaN NaN NaN NaN NaN NaN 67.96 1 67.478 66.978 67.978 -0.48218 0 0 0 0.97302 1 37135 37135 3.5871 1.8448 1 49695 16047 33608 34374 57825 57825 -0.010958009444493655 QLAPSLWCFGF 11 Unmodified _QLAPSLWCFGF_ 0 0 0 REV__ENSG00000135643|ENST00000258111|KCNMB4 REV__ENSG00000135643|ENST00000258111|KCNMB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5426940917969 3 423.542598 1267.60597 0.60181 0.00025489 0.18072 7.6541E-05 0.78253 0.00033143 423.542710955476 67.779 0.4909 67.297 66.985 67.475 -0.48218 47 21 4 0 0 0 0.70147 1 37009 37009 4.1166 0.52957 1 5261800 + 49696 20085 33609 34375 57826 57826 -0.01713354848993731 QLAPSLWCFGF 11 Unmodified _QLAPSLWCFGF_ 0 0 0 REV__ENSG00000135643|ENST00000258111|KCNMB4 REV__ENSG00000135643|ENST00000258111|KCNMB4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 423.542598 1267.60597 0.60181 0.00025489 0.18072 7.6541E-05 0.78253 0.00033143 423.542710955476 67.779 0.4909 67.297 66.985 67.475 -0.48218 -0.064977 -0.00014024 NaN 4.1166 47 21 4 NaN NaN NaN NaN 0 NaN NaN 0 5261800 + 49697 20085 33609 34375 -0.01713354848993731 QLAQFVHEV 9 Unmodified _QLAQFVHEV_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000543026.5_1_12:31240692-31242187:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.785400390625 2 535.785099 1069.55564 0.39933 0.00021395 -0.065871 -3.5293E-05 0.33345 0.00017866 535.7852782007188 50.145 0.32164 50.145 49.986 50.308 0 35 14 4 0 0 0 0.018301 1 27657 27657 65.235 32.93 1 22970000 49698 479 33610 34376 57827 57827 0.023648588175319674 QLAQFVHEV 9 Unmodified _QLAQFVHEV_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000543026.5_1_12:31240692-31242187:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7860717773438 2 535.785099 1069.55564 0.77408 0.00041474 1.7587 0.00094229 2.5328 0.001357 535.7855025368202 50.612 0.32464 50.199 50.051 50.376 -0.41351 40 15 4 0 0 0 0.013041 1 27232 27232 71.922 23.576 1 12371000 49699 479 33610 34376 57828 57828 0.023648588175319674 QLAQFVHEV 9 Unmodified _QLAQFVHEV_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;ENST00000542242.1_1_12:31240692-31242486:+|nuORF;ENST00000542244.5_1_12:31237807-31242486:+|nuORF;ENST00000543026.5_1_12:31240692-31242187:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7863159179688 2 535.785099 1069.55564 0.39541 0.00021185 0.89224 0.00047805 1.2876 0.0006899 535.7857388438902 56.267 0.44251 50.29 50.118 50.561 -5.9769 61 25 3 0 0 0 0.024882 1 35865 35865 58.679 30.192 1 110010000 49700 479 33610 34376 57829 57829 0.023648588175319674 QLAQIDGT 8 Unmodified _QLAQIDGT_ 0 0 0 nc|ENSG00000258469|P59074|CHMP4BP1;ENSG00000101421|ENST00000217402|CHMP4B nc|ENSG00000258469|P59074|CHMP4BP1 nc|ENSG00000258469|P59074|CHMP4BP1 MSMS AL20221201_MKP_PDAC_01 4 423.223388671875 2 423.2218 844.429047 NaN NaN NaN NaN NaN NaN NaN 73.105 1 66.929 66.429 67.429 -6.1757 0 0 0 0.95607 1 47817 47817 9.3474 0 1 49701 1964 33611 34377 57830 57830 0.0006093259239605686 QLCDLETKL 9 Carbamidomethyl (C) _QLC(Carbamidomethyl (C))DLETKL_ QLC(1)DLETKL QLC(56)DLETKL 0 1 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2889404296875 2 560.289356 1118.56416 1.1893 0.00066634 -0.90182 -0.00050528 0.28745 0.00016106 560.2890016425614 54.95 0.41359 49.085 48.835 49.249 -5.8653 65 25 3 0 0 0 0.029718 2 34779 34779;34917 55.503 11.644 1 58661000 49702 4267 33612 34378 57831;57832 57831 430 0.009620446718372477 QLCEDIIQL 9 Carbamidomethyl (C) _QLC(Carbamidomethyl (C))EDIIQL_ QLC(1)EDIIQL QLC(120)EDIIQL 0 1 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3;CCT3|p.A379Gfs*2|1|0.09|ENSG00000163468|chr1:156312060-156312061|-/C|frameshift_variant nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.289794921875 2 566.289356 1130.56416 0.68099 0.00038564 -0.63307 -0.0003585 0.047921 2.7137E-05 566.2890751285237 84.405 0.53584 78.23 77.948 78.483 -6.1757 86 30 4 0 0 0 0.0055767 3 55530 55401;55530;55657 115.69 40.763 1 124230000 49703 6997 33613 34379 57833;57834;57835 57834 686 0.00410044671821197 QLCEPLPSL 9 Carbamidomethyl (C) _QLC(Carbamidomethyl (C))EPLPSL_ QLC(1)EPLPSL QLC(75)EPLPSL 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000529179.1_1_8:144657010-144657269:-|nuORF;ENST00000464332.5_1_8:144657010-144658430:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7733154296875 2 528.773342 1055.53213 0.82959 0.00043867 -1.84 -0.00097293 -1.0104 -0.00053426 528.7723448606656 75.408 0.5422 69.232 68.871 69.413 -6.1757 46 29 2 0 0 0 0.011968 1 49326 49326 74.929 21.096 1 26357000 49704 5884 33614 34380 57836 57836 596 0.00658676988678053 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.8252563476562 2 641.824952 1281.63535 0.64876 0.00041639 -0.42926 -0.00027551 0.2195 0.00014088 641.8246207345647 46.155 0.43339 46.155 45.957 46.391 0 66 20 5 0 0 0 0.43683 1 25142 25142 29.437 11.291 1 88751000 + 49705 27246 33615 34381 57837 57837 0.0057988070086594234 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2185974121094 3 428.21906 1281.63535 0.55214 0.00023644 -0.93451 -0.00040018 -0.38237 -0.00016374 428.21868381518004 46.517 0.19722 46.18 46.053 46.25 -0.33664 18 9 2 0 0 0 0.58003 1 24875 24875 12.35 1.0791 1 9416700 + 49706 27246 33615 34381 57838 57838 0.0057988070086594234 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3272705078125 2 641.824952 1281.63535 0.83988 0.00053906 -0.4354 -0.00027945 0.40448 0.00025961 641.8246405876081 46.233 0.35384 46.199 46.015 46.369 -0.033417 55 16 5 0 0 0 0.46197 1 24812 24812 28.495 6.9044 1 84332000 + 49707 27246 33615 34381 57839 57839 0.0057988070086594234 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 641.824952 1281.63535 0.64876 0.00041639 -0.42926 -0.00027551 0.2195 0.00014088 641.8246207345647 46.155 0.43339 46.155 45.957 46.391 0 -0.0039078 7.2064E-05 NaN 29.437 66 20 5 NaN NaN NaN NaN 0 NaN NaN 0 88751000 + 49708 27246 33615 34381 0.0057988070086594234 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 641.824952 1281.63535 0.35764 0.00022954 -0.55519 -0.00035634 -0.19756 -0.0001268 641.8245666638657 46.459 0.64777 46.122 45.976 46.624 -0.33664 -0.036647 -8.9595E-05 NaN 29.437 108 32 6 NaN NaN NaN NaN 0 NaN NaN 0 769640000 + 49709 27246 33615 34381 0.0057988070086594234 QLDASQPPWLQ 11 Unmodified _QLDASQPPWLQ_ 0 0 0 REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF REV__ENST00000455915.6_1_22:41677053-41677107:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 641.824952 1281.63535 0.83988 0.00053906 -0.4354 -0.00027945 0.40448 0.00025961 641.8246405876081 46.233 0.35384 46.199 46.015 46.369 -0.033417 0.040555 6.4177E-05 NaN 29.437 55 16 5 NaN NaN NaN NaN 0 NaN NaN 0 84332000 + 49710 27246 33615 34381 0.0057988070086594234 QLDDLKVEL 9 Unmodified _QLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7980346679688 2 536.797872 1071.58119 0.40244 0.00021603 0.42129 0.00022615 0.82373 0.00044218 536.7980017771206 61.205 0.64355 61.205 60.767 61.411 0 81 27 5 0 0 0 0.07087 1 34162 34162 39.95 3.8227 1 44442000 49711 4888 33616 34382 57840 57840 0.0482628854927043 QLDDLKVEL 9 Unmodified _QLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7984008789062 2 536.797872 1071.58119 0.042804 2.2977E-05 1.2619 0.00067739 1.3047 0.00070037 536.798337864216 61.659 0.33403 61.171 61.011 61.345 -0.48764 31 15 3 0 0 0 0.032796 1 33556 33556 53.833 17.706 1 4106600 49712 4888 33616 34382 57841 57841 0.0482628854927043 QLDDLKVEL 9 Unmodified _QLDDLKVEL_ 0 0 0 ENST00000446039.2_1_7:27309195-27309288:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF ENST00000446039.2_1_7:27309195-27309288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7982788085938 2 536.797872 1071.58119 0.54374 0.00029188 1.1952 0.00064158 1.7389 0.00093346 536.7982670921349 67.655 0.41836 61.479 61.217 61.636 -6.1757 61 23 3 0 0 0 0.013041 2 43960 43960;44094 71.922 20.117 1 115230000 49713 4888 33616 34382 57842;57843 57842 0.0482628854927043 QLDEARGLLL 10 Unmodified _QLDEARGLLL_ 0 0 0 ENST00000566703.1_1_16:30776326-30777900:+|nuORF;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENSG00000103549|ENST00000324685|RNF40 ENST00000566703.1_1_16:30776326-30777900:+|nuORF ENST00000566703.1_1_16:30776326-30777900:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.32421875 2 564.324588 1126.63462 0.61461 0.00034684 -0.93734 -0.00052896 -0.32273 -0.00018213 564.3240689721795 61.946 0.22584 61.459 61.366 61.592 -0.48764 13 10 2 0 0 0 0.39689 1 33726 33726 24.991 5.734 1 1623500 49714 2152 33617 34383 57844 57844 0.07637086051818187 QLDEEDPCF 9 Unmodified _QLDEEDPCF_ 0 0 0 ENSG00000165905|ENST00000401752|LARGE2;ENST00000530437.5_1_11:45947935-45950393:+|nuORF;ENST00000528236.5_1_11:45947679-45949381:+|nuORF ENSG00000165905|ENST00000401752|LARGE2 ENSG00000165905|ENST00000401752|LARGE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8154602050781 3 365.814823 1094.42264 0.075283 2.754E-05 0.95178 0.00034818 1.0271 0.00037572 365.81536911238976 81.906 0.22126 81.906 81.801 82.022 0 22 13 3 0 0 0 0.60285 1 45434 45434 1.1933 0 1 881300 49715 7403 33618 34384 57845 57845 -0.12079373421306627 QLDELPGGG 9 Unmodified _QLDELPGGG_ 0 0 0 REV__ENSG00000178685|ENST00000313028|PARP10 REV__ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2183227539062 2 443.219257 884.423961 -0.2692 -0.00011932 -0.72505 -0.00032136 -0.99425 -0.00044067 443.21877326989915 55.922 0.22299 55.922 55.892 56.115 0 16 11 2 0 0 0 0.070838 1 31103 31103 39.957 3.9131 1 5423600 + 49716 23057 33619 34385 57846 57846 -0.022873712702107696 QLDESPAVPL 10 Unmodified _QLDESPAVPL_ 0 0 0 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7819213867188 2 534.782222 1067.54989 0.28413 0.00015195 0.12537 6.7044E-05 0.4095 0.00021899 534.7823411389768 87.523 0.47148 87.523 87.244 87.715 0 42 21 3 0 0 0 0.67033 1 48424 48424 6.2058 0.47393 1 1544700 49717 2334 33620 34386 57847 57847 0.01881715515196447 QLDETNALL 9 Unmodified _QLDETNALL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7660522460938 2 508.766571 1015.51859 -0.22823 -0.00011612 -0.87088 -0.00044307 -1.0991 -0.00055919 508.7660690133769 55.961 0.38284 55.961 55.756 56.138 0 57 21 3 0 0 0 0.0055767 2 31121 31016;31121 115.69 58.221 1 58366000 49718 4591 33621 34387 57848;57849 57849 0.011451424810957178 QLDETNALL 9 Unmodified _QLDETNALL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7675170898438 2 508.766571 1015.51859 1.291 0.00065682 -0.112 -5.6983E-05 1.179 0.00059984 508.76654455030774 64.377 0.58467 58.201 57.955 58.54 -6.1757 53 31 2 0 0 0 0.0088174 2 41621 41621;41759 103.75 63.791 1 63223000 49719 4591 33621 34387 57850;57851 57850 0.011451424810957178 QLDNAALR 8 Unmodified _QLDNAALR_ 0 0 0 REV__ENSG00000040608|ENST00000043402|RTN4R REV__ENSG00000040608|ENST00000043402|RTN4R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7482604980469 2 450.748516 899.482479 0.014131 6.3694E-06 0.051094 2.303E-05 0.065224 2.94E-05 450.748691141991 23.322 0.30056 23.322 23.126 23.427 0 25 14 2 0 0 0 0.71527 1 11845 11845 15.847 0 1 758040 + 49720 17195 33622 34388 57852 57852 0.028717300948983393 QLDQRSLVL 9 Unmodified _QLDQRSLVL_ 0 0 0 nc|ENSG00000125826|Q9BYM8-3|RBCK1;ENSG00000125826|ENST00000356286|RBCK1 nc|ENSG00000125826|Q9BYM8-3|RBCK1 nc|ENSG00000125826|Q9BYM8-3|RBCK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8776550292969 3 357.876746 1070.60841 1.691 0.00060518 0.7408 0.00026512 2.4318 0.0008703 357.8773182345059 38.081 0.41089 33.713 33.473 33.884 -4.3689 52 24 3 0 0 0 0.36964 1 22484 22484 13.615 1.4401 1 25058000 49721 3890 33623 34389 57853 57853 0.07592816880332975 QLDSIVEQL 9 Unmodified _QLDSIVEQL_ 0 0 0 REV__ENST00000496204.1_1_5:131931266-131935763:+|nuORF REV__ENST00000496204.1_1_5:131931266-131935763:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7830810546875 2 522.782222 1043.54989 0.43895 0.00022948 -0.039176 -2.048E-05 0.39977 0.00020899 522.7821936499254 50.429 0.35085 50.429 50.209 50.56 0 30 15 3 0 0 0 0.05447 1 27799 27799 43.858 9.4566 1 6028800 + 49722 18871 33624 34390 57854 57854 0.029857155152058112 QLDTSVSS 8 Unmodified _QLDTSVSS_ 0 0 0 ENST00000601417.1_1_19:53548107-53552264:+|nuORF ENST00000601417.1_1_19:53548107-53552264:+|nuORF ENST00000601417.1_1_19:53548107-53552264:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.4000244140625 1 836.399603 835.392327 1.1424 0.00095553 -2.954 -0.0024707 -1.8115 -0.0015152 836.3975976915301 100.41 0.12003 94.237 94.171 94.291 -6.1757 10 7 2 0 0 0 0.70294 1 67138 67138 16.942 0 1 17381000 49723 15805 33625 34391 57855 57855 -0.031953640241795256 QLEEETPYI 9 Unmodified _QLEEETPYI_ 0 0 0 REV__ENSG00000056097|ENST00000265069|ZFR REV__ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.269287109375 2 561.271687 1120.52882 1.6422 0.00092171 -3.3635 -0.0018878 -1.7213 -0.00096611 561.2701052035477 58.96 0.60596 52.885 52.527 53.133 -6.0745 56 33 3 0 0 0 0.32871 1 37784 37784 15.847 1.4418 1 37960000 + 49724 17295 33626 34392 57856 57856 -0.02662294584342817 QLEERERYRNY 11 Unmodified _QLEERERYRNY_ 0 0 0 REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 778.3827514648438 2 778.384228 1554.7539 0.34897 0.00027164 -0.33326 -0.0002594 0.015715 1.2232E-05 778.3839253311874 60.04 0.76828 60.04 59.532 60.301 0 59 34 3 0 0 0 0.74046 1 33302 33302 0.30703 0 1 2281700 + 49725 19661 33627 34393 57857 57857 -0.0012837206143103685 QLEKRKQL 8 Unmodified _QLEKRKQL_ 0 0 0 REV__ENSG00000118007|ENST00000383202|STAG1;REV__nc|ENSG00000101972|Q8N3U4|STAG2 REV__nc|ENSG00000101972|Q8N3U4|STAG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7957153320312 2 521.822015 1041.62948 1.3687 0.00071424 0.67171 0.00035051 2.0404 0.0010647 521.8218658393334 40.97 0.28593 36.362 36.227 36.513 -4.6079 24 17 2 0 0 0 8.7369 1 24489 24489 20.871 2.7362 1 9171100 + 49726 19132;18208 33628 34394 57858 57858 0.11032826979840138 QLELIYHEL 9 Unmodified _QLELIYHEL_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.81494140625 2 579.313689 1156.61282 0.42468 0.00024602 0.6329 0.00036665 1.0576 0.00061267 579.3139961477189 95.182 0.3493 94.814 94.619 94.968 -0.36815 29 17 2 0 0 0 0.55144 1 51954 51954 4.3292 1.0479 1 835690 + 49727 20652 33629 34395 57859 57859 0.040782813032365084 QLEQLRQFEEK 11 Unmodified _QLEQLRQFEEK_ 0 0 0 REV__nc|ENSG00000125386|P78312-4|FAM193A REV__nc|ENSG00000125386|P78312-4|FAM193A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 724.3796997070312 2 724.380623 1446.74669 NaN NaN NaN NaN NaN NaN NaN 26.797 1 26.826 26.326 27.326 0.028664 0 0 0 0.94184 1 13911 13911 1.1933 0 1 + 49728 19489 33630 34396 57860 57860 0.041188953381151805 QLEVPEPY 8 Unmodified _QLEVPEPY_ 0 0 0 ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP ENSG00000135451|ENST00000257909|TROAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7200927734375 2 487.745108 973.475663 0.91175 0.0004447 1.3568 0.00066177 2.2685 0.0011065 487.7460924775982 42.603 0.37158 42.603 42.445 42.816 0 33 18 2 0 0 0 8.7369 1 23167 23167 7.9102 0 1 2119200 49729 4708 33631 34397 57861 57861 -0.012136275763396043 QLEWMFPMM 9 Unmodified _QLEWMFPMM_ 0 0 0 REV__ENST00000464889.5_1_6:150117589-150123339:+|nuORF REV__ENST00000464889.5_1_6:150117589-150123339:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8162841796875 2 606.766148 1211.51774 -0.64518 -0.00039148 -2.6072 -0.001582 -3.2524 -0.0019734 606.7643530678167 78.136 0.2113 77.653 77.549 77.76 -0.4826 20 9 3 0 0 0 0.20358 1 42843 42843 10.074 2.1638 1 1565300 + 49730 27383 33632 34398 57862 57862 -0.0795543475546765 QLFAYVYPWI 10 Unmodified _QLFAYVYPWI_ 0 0 0 REV__nc|ENSG00000147853|Q9UIJ7-2|AK3 REV__nc|ENSG00000147853|Q9UIJ7-2|AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.343017578125 2 650.342249 1298.66995 0.33134 0.00021549 -0.43249 -0.00028127 -0.10115 -6.5781E-05 650.342919909994 93.567 0.17484 93.109 93.023 93.198 -0.4574 10 7 2 0 0 0 0.71123 1 51138 51138 1.6526 0.17072 1 224930 + 49731 20915 33633 34399 57863 57863 0.03255748579590545 QLFCRNFVTTS 11 Unmodified _QLFCRNFVTTS_ 0 0 0 REV__ENST00000463886.1_1_22:41998573-42000148:-|nuORF REV__ENST00000463886.1_1_22:41998573-42000148:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.326904296875 2 658.326805 1314.63906 0.5012 0.00032995 -1.1974 -0.00078829 -0.69621 -0.00045833 658.3258021688598 51.09 0.24539 51.036 50.882 51.127 -0.053871 19 11 2 0 0 0 0.631 1 27616 27616 12.241 2.8575 1 1554800 + 49732 27361 33634 34400 57864 57864 -0.005677727969441548 QLFDQIPEL 9 Unmodified _QLFDQIPEL_ 0 0 0 ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8;ENST00000567785.5_1_16:27226197-27231714:+|nuORF ENSG00000155666|ENST00000286096|KDM8 ENSG00000155666|ENST00000286096|KDM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7921752929688 2 551.792589 1101.57063 0.55902 0.00030846 3.2145 0.0017738 3.7736 0.0020822 551.7939339681184 87.706 0.23251 87.202 87.101 87.334 -0.50423 17 10 2 0 0 0 0.32871 1 47991 47991 15.847 3.3156 1 678640 49733 6403 33635 34401 57865 57865 0.023903058948462785 QLFEDLVYL 9 Unmodified _QLFEDLVYL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.303466796875 2 570.30279 1138.59103 0.49825 0.00028415 1.1018 0.00062835 1.6 0.0009125 570.3031893141948 99.725 0.11676 99.567 99.496 99.613 -0.1575 12 3 4 0 0 0 0.085319 1 54444 54444 48.346 21.462 1 2770100 49734 8479 33636 34402 57866 57866 0.02727476554673558 QLFEDLVYL 9 Unmodified _QLFEDLVYL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3042602539062 2 570.30279 1138.59103 1.5228 0.00086846 -1.1102 -0.00063315 0.41261 0.00023531 570.3023036462977 101.02 0.14357 94.842 94.78 94.923 -6.1757 16 7 3 0 0 0 0.011291 1 67703 67703 96.285 69.401 1 49713000 49735 8479 33636 34402 57867 57867 0.02727476554673558 QLFEKQLQL 9 Unmodified _QLFEKQLQL_ 0 0 0 nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12 nc|ENSG00000127947|Q05209-2|PTPN12 nc|ENSG00000127947|Q05209-2|PTPN12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.259033203125 2 573.829506 1145.64446 0.46898 0.00026912 -0.40395 -0.0002318 0.065028 3.7315E-05 573.829274790884 59.375 0.27827 58.884 58.729 59.007 -0.49079 26 12 3 0 0 0 0.069627 1 32305 32305 46.021 11.619 1 5330800 49736 4034 33637 34403 57868 57868 0.07746274057171831 QLFEKQLQL 9 Unmodified _QLFEKQLQL_ 0 0 0 nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;ENSG00000127947|ENST00000248594|PTPN12 nc|ENSG00000127947|Q05209-2|PTPN12 nc|ENSG00000127947|Q05209-2|PTPN12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.2576904296875 2 573.829506 1145.64446 0.80787 0.00046358 1.5962 0.00091596 2.4041 0.0013795 573.8310821720747 65.125 0.5036 58.949 58.606 59.11 -6.1757 34 27 2 0 0 0 0.14225 1 42289 42289 30.637 13.524 1 9543500 49737 4034 33637 34403 57869 57869 0.07746274057171831 QLFKCCFCDF 10 Unmodified _QLFKCCFCDF_ 0 0 0 ENSG00000017427|ENST00000337514|IGF1;nc|ENSG00000017427|P05019-4|IGF1;nc|ENSG00000017427|P05019|IGF1 ENSG00000017427|ENST00000337514|IGF1 ENSG00000017427|ENST00000337514|IGF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7618408203125 2 627.26123 1252.50791 0.058414 3.6641E-05 -0.27685 -0.00017366 -0.21843 -0.00013701 627.2610141176565 71.9 0.31976 71.9 71.734 72.054 0 32 14 3 0 0 0 0.71123 1 40118 40118 1.6526 0 1 1352000 49738 503 33638 34404 57870 57870 -0.10824622760856073 QLFKRLKH 8 Unmodified _QLFKRLKH_ 0 0 0 REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27 REV__nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3339233398438 2 535.335093 1068.65563 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.48 103.98 104.98 -0.048737 0 0 0 0.97444 1 58037 58037 0.69038 0 1 + 49739 21472 33639 34405 57871 57871 0.12405140941996251 QLFLFFQI 8 Unmodified _QLFLFFQI_ 0 0 0 REV__nc|ENSG00000133818|P62070-4|RRAS2 REV__nc|ENSG00000133818|P62070-4|RRAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8714294433594 3 352.535661 1054.58515 -0.38632 -0.00013619 2.5059 0.00088341 2.1196 0.00074722 352.5366441312368 20.58 0.18252 20.608 20.504 20.686 0.028357 16 8 3 0 0 0 0.80232 1 10441 10441 6.7232 0 1 466980 + 49740 29636 33640 34406 57872 57872 0.06004422833666467 QLFMQLLSF 9 Unmodified _QLFMQLLSF_ 0 0 0 REV__ENSG00000040531|ENST00000046640|CTNS REV__ENSG00000040531|ENST00000046640|CTNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8047485351562 2 563.801903 1125.58925 0.65661 0.0003702 2.4211 0.001365 3.0777 0.0017352 563.8034609169343 74.487 0.59487 74.533 74.281 74.876 0.045959 48 26 2 0 0 0 0.49272 1 41052 41052 7.9102 0.62092 1 2118700 + 49741 17194 33641 34407 57873 57873 0.03148144265060182 QLFQEKIKQM 10 Unmodified _QLFQEKIKQM_ 0 0 0 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 REV__nc|ENSG00000090615|Q08378-4|GOLGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.35498046875 2 646.855198 1291.69584 0.50958 0.00032962 -2.3479 -0.0015188 -1.8384 -0.0011892 646.8529869501187 60.539 0.18148 60.495 60.371 60.553 -0.04351 14 8 2 0 0 0 0.0575 1 33021 33021 56.177 8.4284 1 9765200 + 49742 17866 33642 34408 57874 57874 0.061662747595619294 QLFQGAFLGS 10 Unmodified _QLFQGAFLGS_ 0 0 0 nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1 nc|ENSG00000171790|Q499Z3-2|SLFNL1 nc|ENSG00000171790|Q499Z3-2|SLFNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2802734375 2 534.279649 1066.54475 0.24273 0.00012968 -0.628 -0.00033553 -0.38527 -0.00020584 534.279386045507 73.433 0.42034 73.477 73.272 73.692 0.043983 51 18 4 0 0 0 0.46514 2 40415 40415;40509 18.146 1.2041 1 6059800 49743 8139 33643 34409 57875;57876 57875 0.014134564432424668 QLFQGVLTL 9 Unmodified _QLFQGVLTL_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8013305664062 2 509.800217 1017.58588 2.0616 0.001051 -0.52647 -0.0002684 1.5352 0.00078263 509.79995405696485 93.309 0.31137 93.332 93.16 93.472 0.022987 20 11 2 0 0 0 0.042911 1 51907 51907 48.346 14.243 1 1521900 49744 874 33644 34410 57877 57877 0.07779217482709555 QLFSQQHFL 9 Unmodified _QLFSQQHFL_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.297607421875 2 574.298373 1146.58219 0.38139 0.00021903 -0.87566 -0.00050289 -0.49428 -0.00028386 574.2976189399856 60.312 0.23785 60.269 60.113 60.351 -0.04351 20 12 2 0 0 0 0.0087807 1 32876 32876 108 55.729 1 8576900 49745 9016 33645 34411 57878 57878 0.014765477088531043 QLFTSGSYIW 10 Unmodified _QLFTSGSYIW_ 0 0 0 ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2 ENST00000480738.1_1_13:99967048-100037586:+|nuORF ENST00000480738.1_1_13:99967048-100037586:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3003540039062 2 601.298039 1200.58152 0.014565 8.7578E-06 0.013144 7.9032E-06 0.027708 1.6661E-05 601.2981831735838 67.516 0.45513 61.341 61.091 61.546 -6.1757 56 25 3 0 0 0 0.18021 1 43910 43910 36.127 1.7253 1 30339000 49746 4648 33646 34412 57879 57879 -0.010742917308789401 QLGDRLSVEL 10 Unmodified _QLGDRLSVEL_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5 ENSG00000204889|ENST00000377755|KRT40 ENSG00000204889|ENST00000377755|KRT40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.211669921875 3 377.211906 1128.61389 -0.65049 -0.00024537 0.17013 6.4174E-05 -0.48036 -0.0001812 377.2119753527983 28.623 0.29767 28.623 28.483 28.781 0 24 14 2 0 0 0 0.60478 1 14847 14847 10.899 0 1 25973000 + 49747 208 33647 34413 57880 57880 0.05472495672142941 QLGGARRGDP 10 Unmodified _QLGGARRGDP_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8199462890625 2 513.775597 1025.53664 0.26475 0.00013602 0.28667 0.00014729 0.55142 0.00028331 513.7757337679453 26.402 0.25949 23.451 23.319 23.579 -2.9511 22 13 2 0 0 0 0.42143 1 14622 14622 20.415 2.2796 1 7451300 + 49748 28837 33648 34414 57881 57881 0.02489322246469783 QLGLKDVLIQ 10 Unmodified _QLGLKDVLIQ_ 0 0 0 REV__ENSG00000177992|ENST00000325643|SPATA31E1 REV__ENSG00000177992|ENST00000325643|SPATA31E1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2949829101562 2 563.845156 1125.67576 0.42194 0.00023791 -0.60977 -0.00034381 -0.18782 -0.0001059 563.8450663487071 61.265 0.27102 61.265 61.095 61.366 0 19 11 3 0 0 0 0.2362 1 34133 34133 7.609 0.97858 1 1017700 + 49749 23014 33649 34415 57882 57882 0.11794847091277916 QLGSLLEVLHV 11 Unmodified _QLGSLLEVLHV_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2410583496094 3 403.239684 1206.69722 0.13341 5.3798E-05 2.9559 0.001192 3.0894 0.0012458 403.2412232902961 39.777 0.30906 39.782 39.585 39.894 0.0050545 23 14 3 0 0 0 0.66428 1 21202 21202 3.8459 0 1 1291000 + 49750 29763 33650 34416 57883 57883 0.10214232119983535 QLHASHCLDD 10 Unmodified _QLHASHCLDD_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.751220703125 2 569.75093 1137.48731 0.33865 0.00019294 1.0039 0.00057199 1.3426 0.00076494 569.7515726376394 63.073 0.34845 63.073 62.87 63.219 0 40 14 4 0 0 0 0.69377 2 35138 35138;35234 3.5965 0.70727 1 5210000 49751 1070 33651 34417 57884;57885 57884 -0.07593753824653504 QLHCDVFF 8 Unmodified _QLHCDVFF_ 0 0 0 REV__ENST00000379066.5_1_2:37480197-37480257:-|nuORF REV__ENST00000379066.5_1_2:37480197-37480257:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7330322265625 2 504.73402 1007.45349 -0.070923 -3.5797E-05 -1.7537 -0.00088513 -1.8246 -0.00092093 504.73301719222286 64.993 0.23615 64.509 64.403 64.64 -0.48428 19 10 2 0 0 0 0.75262 1 35466 35466 12.532 0.89125 1 959410 + 49752 26276 33652 34418 57886 57886 -0.049941305257334534 QLHLQQLSP 9 Unmodified _QLHLQQLSP_ 0 0 0 REV__ENST00000462656.5_1_10:134147028-134161500:+|nuORF REV__ENST00000462656.5_1_10:134147028-134161500:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2969970703125 2 532.298373 1062.58219 -0.0016501 -8.7837E-07 0.6542 0.00034823 0.65255 0.00034735 532.2987017488572 29.804 0.35487 29.834 29.693 30.047 0.030106 22 13 2 0 0 0 0.59218 1 15678 15678 1.8442 0 1 1848000 + 49753 20970 33653 34419 57887 57887 0.05340547708851773 QLHLSEHFRRI 11 Unmodified _QLHLSEHFRRI_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.9356079101562 3 479.268748 1434.78442 1.2059 0.00057794 -1.4188 -0.00067999 -0.21293 -0.00010205 479.2695735919267 50.131 0.44707 44.592 44.344 44.791 -5.5391 85 28 4 0 0 0 0.67892 2 31414 31414;31463 6.2344 2.6417 1 46323000 + 49754 22278 33654 34420 57888;57889 57888 0.0844145111425405 QLHLSTKF 8 Unmodified _QLHLSTKF_ 0 0 0 REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF REV__ENST00000533035.5_1_11:65627684-65629484:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2785949707031 2 487.276909 972.539266 NaN NaN NaN NaN NaN NaN NaN 27.675 1 24.639 24.139 25.139 -3.0365 0 0 0 0.93394 1 15357 15357 13.906 3.7227 1 + 49755 28473 33655 34421 57890 57890 0.0518977765142381 QLHQVDYKLQD 11 Unmodified _QLHQVDYKLQD_ 0 0 0 REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.9049377441406 3 462.905253 1385.69393 0.18972 8.7823E-05 0.25398 0.00011757 0.4437 0.00020539 462.90546125996735 28.88 0.18831 28.91 28.821 29.009 0.030104 17 7 3 0 0 0 0.65096 1 15044 15044 8.7518 3.7043 1 6236000 + 49756 18605 33656 34422 57891 57891 0.016509372753034768 QLHQVDYKLQD 11 Unmodified _QLHQVDYKLQD_ 0 0 0 REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 462.905253 1385.69393 0.18972 8.7823E-05 0.25398 0.00011757 0.4437 0.00020539 462.90546125996735 28.88 0.18831 28.91 28.821 29.009 0.030104 -0.023629 0.00027902 NaN 8.7518 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 6236000 + 49757 18605 33656 34422 0.016509372753034768 QLHQVDYKLQD 11 Unmodified _QLHQVDYKLQD_ 0 0 0 REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF REV__ENST00000571658.2_2_17:45009367-45009658:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 462.905253 1385.69393 0.53545 0.00024786 0.2669 0.00012355 0.80235 0.00037141 462.9054204045647 32.827 0.17151 28.971 28.872 29.044 -3.8562 0.036964 0.00029696 NaN 8.7518 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 8780100 + 49758 18605 33656 34422 0.016509372753034768 QLHRTTNFFI 10 Unmodified _QLHRTTNFFI_ 0 0 0 ENSG00000163064|ENST00000295206|EN1 ENSG00000163064|ENST00000295206|EN1 ENSG00000163064|ENST00000295206|EN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2341613769531 3 426.231412 1275.67241 0.3808 0.00016231 2.8901 0.0012318 3.2709 0.0013941 426.2326325814174 42.477 0.17852 42.469 42.36 42.539 -0.0088196 9 7 2 0 0 0 0.69848 1 22774 22774 3.0723 0.22898 1 7435600 49759 6945 33657 34423 57892 57892 0.04559597037268759 QLHSELVTDQL 11 Unmodified _QLHSELVTDQL_ 0 0 0 REV__ENST00000464829.5_1_9:33462182-33469499:-|nuORF REV__ENST00000464829.5_1_9:33462182-33469499:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.8385620117188 2 641.835517 1281.65648 -0.022337 -1.4337E-05 2.6617 0.0017084 2.6394 0.001694 641.8358133146968 92.802 0.49374 92.802 92.531 93.025 0 83 33 4 0 0 0 0.70711 1 51289 51289 3.5871 0.30575 1 868930 + 49760 21998 33658 34424 57893 57893 0.026918460097249408 QLHTRATEAF 10 Unmodified _QLHTRATEAF_ 0 0 0 REV__ENST00000491238.5_1_3:71161735-71179856:-|nuORF REV__ENST00000491238.5_1_3:71161735-71179856:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.30322265625 2 587.304187 1172.59382 NaN NaN NaN NaN NaN NaN NaN 103.5 1 103.5 103 104 0 0 0 0 0.95103 1 57053 57053 5.7319 0.97584 1 + 49761 27891 33659 34425 57894 57894 0.014427447321850195 QLHVILKELR 10 Unmodified _QLHVILKELR_ 0 0 0 ENSG00000138180|ENST00000371485|CEP55;nc|ENSG00000138180|Q53EZ4-2|CEP55;ENST00000496302.1_1_10:95278654-95279576:+|nuORF ENSG00000138180|ENST00000371485|CEP55 ENSG00000138180|ENST00000371485|CEP55 MSMS AL20221201_MKP_PDAC_01 4 416.9298706054688 3 416.931073 1247.77139 NaN NaN NaN NaN NaN NaN NaN 14.889 1 12.362 11.862 12.862 -2.5273 0 0 0 1.0004 1 7594 7594 0.62683 0 1 49762 5030 33660 34426 57895 57895 0.15741620002154377 QLIDAVLNL 9 Unmodified _QLIDAVLNL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MSMS AL20221201_MKP_PDAC_01 4 499.797607421875 2 499.797675 997.580796 NaN NaN NaN NaN NaN NaN NaN 99.97 1 93.795 93.295 94.295 -6.1757 0 0 0 0.028486 1 66746 66746 68.081 9.4019 1 49763 7256 33661 34427 57896 57896 0.08190913620080664 QLIDIIHTA 9 Unmodified _QLIDIIHTA_ 0 0 0 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2971801757812 2 512.295299 1022.57605 0.38325 0.00019634 1.4299 0.00073255 1.8132 0.00092889 512.2960907561289 61.258 0.29411 61.258 61.095 61.389 0 33 12 3 0 0 0 0.012148 1 34131 34131 74.423 23.568 1 3470500 49764 4878 33662 34428 57897 57897 0.06566029477323809 QLIDKVWQL 9 Unmodified _QLIDKVWQL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.83251953125 2 571.832049 1141.64954 0.84017 0.00048044 -0.29534 -0.00016888 0.54483 0.00031155 571.8319497660262 73.158 0.37483 72.682 72.451 72.826 -0.47588 53 16 4 0 0 0 0.0082661 1 39990 39990 92.491 40.223 1 7739900 49765 4157 33663 34429 57898 57898 0.08438577919810086 QLIDKVWQL 9 Unmodified _QLIDKVWQL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8328857421875 2 571.832049 1141.64954 0.019069 1.0904E-05 0.69448 0.00039713 0.71355 0.00040803 571.8323876356677 72.517 0.50713 72.558 72.316 72.823 0.041725 71 23 4 0 0 0 0.010818 2 39911 39911;40009 78.149 30.401 1 68463000 49766 4157 33663 34429 57899;57900 57899 0.08438577919810086 QLIDKVWQL 9 Unmodified _QLIDKVWQL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8324584960938 2 571.832049 1141.64954 1.1103 0.00063492 0.76988 0.00044024 1.8802 0.0010752 571.8327737256034 91.583 0.72877 85.407 85.059 85.788 -6.1757 124 40 4 0 0 0 0.0017364 3 60536 60411;60536;60658 134.3 72.938 1 194720000 49767 4157 33663 34429 57901;57902;57903 57902 0.08438577919810086 QLIDLAEEY 9 Unmodified _QLIDLAEEY_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.274658203125 2 547.274229 1092.53391 0.32334 0.00017696 1.4231 0.00077881 1.7464 0.00095577 547.2742973820912 69.5 0.42354 69.5 69.269 69.692 0 68 19 5 0 0 0 0.013609 2 38781 38681;38781 88.904 47.064 1 8858700 49768 5160 33664 34430 57904;57905 57905 -0.008659907217179352 QLIDLAEEY 9 Unmodified _QLIDLAEEY_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2739868164062 2 547.274229 1092.53391 0.4846 0.00026521 -0.18 -9.851E-05 0.3046 0.0001667 547.2740177729072 78.25 0.51799 72.074 71.702 72.22 -6.1757 40 29 2 0 0 0 0.024189 2 51233 51054;51233 74.929 42.624 1 23435000 49769 5160 33664 34430 57906;57907 57907 -0.008659907217179352 QLIFPQSTL 9 Unmodified _QLIFPQSTL_ 0 0 0 REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1 REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.7769775390625 2 523.797675 1045.5808 1.2259 0.00064211 2.4564 0.0012867 3.6823 0.0019288 524.3003646219795 96.245 0.19708 90.07 89.925 90.122 -6.1757 17 11 2 0 0 0 0.19496 1 63775 63775 13.906 2.2658 1 4271700 + 49770 29831 33665 34431 57908 57908 0.05982913620096042 QLIKELPEL 9 Unmodified _QLIKELPEL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.8269653320312 2 541.826432 1081.63831 0.13631 7.3858E-05 1.1704 0.00063414 1.3067 0.000708 541.8269878190273 65.132 0.32686 65.132 64.994 65.32 0 33 13 3 0 0 0 0.19361 2 36303 36303;36406 32.305 3.1841 1 2619500 49771 7963 33666 34432 57909;57910 57909 0.10075755825664601 QLIKELPEL 9 Unmodified _QLIKELPEL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.8268432617188 2 541.826432 1081.63831 -0.077081 -4.1764E-05 1.1301 0.00061231 1.053 0.00057054 541.8271015560241 65.588 0.26645 65.104 64.979 65.246 -0.48428 30 11 3 0 0 0 0.098164 1 35781 35781 43.858 9.4566 1 3683100 49772 7963 33666 34432 57911 57911 0.10075755825664601 QLIKHAVYL 9 Unmodified _QLIKHAVYL_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.5943603515625 2 542.829309 1083.64407 0.24147 0.00013108 1.3985 0.00075917 1.64 0.00089025 542.8302456648258 39.11 0.19596 39.122 39.021 39.217 0.011452 13 8 2 0 0 0 0.18521 1 20796 20796 16.942 4.4107 1 1185300 49773 852 33667 34433 57912 57912 0.10558899127977384 QLIKHAVYL 9 Unmodified _QLIKHAVYL_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.829309 1083.64407 -0.24122 -0.00013094 0.62928 0.00034159 0.38806 0.00021065 542.8295556240264 39.498 0.21654 39.201 39.091 39.308 -0.29716 -0.0042743 -0.00034009 NaN 16.942 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1330400 49774 852 33667 34433 0.10558899127977384 QLIKHAVYL 9 Unmodified _QLIKHAVYL_ 0 0 0 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 ENSG00000062725|ENST00000083182|APPBP2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 542.829309 1083.64407 0.38504 0.00020901 0.90096 0.00048907 1.286 0.00069808 542.8293365831556 44.119 0.19492 39.294 39.16 39.355 -4.8253 0.08817 -4.5131E-05 NaN 16.942 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 11347000 49775 852 33667 34433 0.10558899127977384 QLINIRVEL 9 Unmodified _QLINIRVEL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3386840820312 2 549.337498 1096.66044 NaN NaN NaN NaN NaN NaN NaN 74.208 1 74.252 73.752 74.752 0.043983 0 0 0 0.042175 1 40903 40903 75.761 17.082 1 49776 5560 33668 34434 57913 57913 0.1159798029407284 QLINIRVEL 9 Unmodified _QLINIRVEL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3373413085938 2 549.337498 1096.66044 NaN NaN NaN NaN NaN NaN NaN 74.599 1 74.645 74.145 75.145 0.045959 0 0 0 0.36452 1 41123 41123 28.495 1.6109 1 49777 5560 33668 34434 57914 57914 0.1159798029407284 QLINIRVEL 9 Unmodified _QLINIRVEL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3383178710938 2 549.337498 1096.66044 0.80515 0.0004423 0.3957 0.00021737 1.2008 0.00065967 549.3377767975716 90.384 0.65536 84.209 83.868 84.523 -6.1757 97 38 3 0 0 0 0.011739 2 59730 59599;59730 92.653 11.04 1 44043000 49778 5560 33668 34434 57915;57916 57916 0.1159798029407284 QLIRETLISW 10 Unmodified _QLIRETLISW_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.2903442382812 2 629.861338 1257.70812 0.35674 0.00022469 -0.80805 -0.00050896 -0.45131 -0.00028427 629.8614082386911 79.33 0.26673 79.385 79.257 79.523 0.054977 22 9 3 0 0 0 0.23343 1 43815 43815 10.8 1.4164 1 4107600 49779 9273 33669 34435 57917 57917 0.08957634494277045 QLITCNPCI 9 Unmodified _QLITCNPCI_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1;REV__nc|ENSG00000101191|Q9BTC0-3|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.2993469238281 2 502.748813 1003.48307 0.92177 0.00046342 -0.17827 -8.9626E-05 0.7435 0.00037379 502.7490510710343 65.005 0.3618 58.829 58.606 58.968 -6.1757 34 19 2 0 0 0 0.17718 1 42003 42003 10.074 2.1638 1 8155400 + 49780 18143;29538 33670 34436 57918 57918 -0.018529345719116463 QLIYHENI 8 Unmodified _QLIYHENI_ 0 0 0 ENSG00000142556|ENST00000270649|ZNF614 ENSG00000142556|ENST00000270649|ZNF614 ENSG00000142556|ENST00000270649|ZNF614 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2872924804688 2 515.271824 1028.5291 NaN NaN NaN NaN NaN NaN NaN 57.447 1 57.447 56.947 57.947 0 0 0 0 0.95607 1 31967 31967 9.3474 0 1 49781 5428 33671 34437 57919 57919 0.015971699261854155 QLKEYEDDWT 10 Unmodified _QLKEYEDDWT_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2302856445312 3 442.866464 1325.57756 -0.51631 -0.00022866 -0.049324 -2.1844E-05 -0.56564 -0.0002505 442.8664894383331 28.03 0.30508 28.03 27.884 28.189 0 46 18 3 0 0 0 0.24005 1 14547 14547 0.77653 0 1 15488000 + 49782 23893 33672 34438 57920 57920 -0.07220426015260273 QLKHHFADLYK 11 Unmodified _QLKHHFADLYK_ 0 0 0 ENST00000503423.5_1_4:114267078-114274201:+|nuORF ENST00000503423.5_1_4:114267078-114274201:+|nuORF ENST00000503423.5_1_4:114267078-114274201:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.7520141601562 3 467.254216 1398.74082 1.2049 0.00056298 3.6065 0.0016851 4.8113 0.0022481 467.5913071161048 50.378 0.18321 50.329 50.23 50.413 -0.048828 15 8 3 0 0 0 0.30584 1 27268 27268 1.3296 0.11481 1 705710 49783 14470 33673 34439 57921 57921 0.05739841617105412 QLKHLSLLTT 10 Unmodified _QLKHLSLLTT_ 0 0 0 nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC nc|ENSG00000145321|P02774-2|GC nc|ENSG00000145321|P02774-2|GC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2348937988281 3 385.236163 1152.68666 NaN NaN NaN NaN NaN NaN NaN 59.545 1 59.054 58.554 59.554 -0.49079 0 0 0 1.0024 1 32398 32398 0.13989 0 1 49784 5684 33674 34440 57922 57922 0.11642249465558052 QLKHLSLLTT 10 Unmodified _QLKHLSLLTT_ 0 0 0 nc|ENSG00000145321|P02774-2|GC;ENSG00000145321|ENST00000273951|GC;nc|ENSG00000145321|P02774-3|GC nc|ENSG00000145321|P02774-2|GC nc|ENSG00000145321|P02774-2|GC MSMS AL20221201_MKP_PDAC_01 4 385.2354125976562 3 385.236163 1152.68666 NaN NaN NaN NaN NaN NaN NaN 9.3934 1 6.9114 6.4114 7.4114 -2.482 0 0 0 1.0024 1 4740 4740 0.13989 0 1 49785 5684 33674 34440 57923 57923 0.11642249465558052 QLKLNSSGS 9 Unmodified _QLKLNSSGS_ 0 0 0 nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN nc|ENSG00000123240|Q96CV9-3|OPTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.255126953125 2 467.253631 932.49271 1.1449 0.00053498 0.4015 0.0001876 1.5464 0.00072258 467.2536305365232 102.59 0.131 96.419 96.334 96.465 -6.1757 52 21 3 0 0 0 0.58865 1 68833 68833 2.0598 0.40713 1 64606000 49786 3693 33675 34441 57924 57924 0.02376293029487897 QLKQLAREF 9 Unmodified _QLKQLAREF_ 0 0 0 REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2217407226562 3 378.220624 1131.64004 NaN NaN NaN NaN NaN NaN NaN 40.09 1 40.095 39.595 40.595 0.0050545 0 0 0 0.84564 1 21370 21370 1.0715 0.10919 1 + 49787 20379 33676 34442 57925 57925 0.07948809634262943 QLKWWQWWIWW 11 Unmodified _QLKWWQWWIWW_ 0 0 0 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.4419555664062 2 873.440621 1744.86669 NaN NaN NaN NaN NaN NaN NaN 82.165 1 81.67 81.17 82.17 -0.4952 0 0 0 0.9435 1 44984 44984 0 0 1 + 49788 16776 33677 34443 57926 57926 0.024049731932109353 QLKWWQWWIWW 11 Unmodified _QLKWWQWWIWW_ 0 0 0 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 873.443603515625 2 873.440621 1744.86669 NaN NaN NaN NaN NaN NaN NaN 85.607 1 85.669 85.169 86.169 0.061638 0 0 0 0.9435 1 47388 47388 0 0 1 + 49789 16776 33677 34443 57927 57927 0.024049731932109353 QLKWWQWWIWW 11 Unmodified _QLKWWQWWIWW_ 0 0 0 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 873.4393920898438 2 873.440621 1744.86669 NaN NaN NaN NaN NaN NaN NaN 101.07 1 101.02 100.52 101.52 -0.04216 0 0 0 0.94307 1 56147 56147 0.30703 0.30703 1 + 49790 16776 33677 34443 57928 57928 0.024049731932109353 QLKYFRERRWS 11 Unmodified _QLKYFRERRWS_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.4281005859375 2 784.925866 1567.83718 0.32606 0.00025594 1.8511 0.0014529 2.1771 0.0017089 784.9274860516342 76.602 0.25667 76.652 76.567 76.824 0.05011 19 10 3 0 0 0 0.73114 1 42272 42272 1.3295 0 1 2341800 + 49791 23618 33678 34444 57929 57929 0.07597409177060399 QLKYFRERRWS 11 Unmodified _QLKYFRERRWS_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.42919921875 2 784.925866 1567.83718 0.59771 0.00046916 0.79819 0.00062652 1.3959 0.0010957 784.9266495151927 78.775 0.40372 78.83 78.652 79.056 0.05497 35 15 3 0 0 0 0.74046 1 43487 43487 0.30703 0 1 4234000 + 49792 23618 33678 34444 57930 57930 0.07597409177060399 QLKYFRERRWS 11 Unmodified _QLKYFRERRWS_ 0 0 0 REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF REV__ENST00000461445.5_1_3:38051483-38071030:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.428466796875 2 784.925866 1567.83718 0.28597 0.00022446 1.5036 0.0011802 1.7895 0.0014046 785.4287385614062 80.064 0.4474 80.122 79.722 80.17 0.057587 44 17 4 0 0 0 0.73114 1 44151 44151 1.3295 0 1 11814000 + 49793 23618 33678 34444 57931 57931 0.07597409177060399 QLLAILPEA 9 Unmodified _QLLAILPEA_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2955932617188 2 484.294768 966.574983 0.27398 0.00013269 1.0944 0.00053002 1.3684 0.00066271 484.2954236838192 84.876 0.33572 84.876 84.631 84.967 0 31 16 3 0 0 0 0.042911 1 47012 47012 48.346 10.372 1 1336200 49794 8080 33679 34445 57932 57932 0.09035815108416045 QLLAILPEA 9 Unmodified _QLLAILPEA_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2952575683594 2 484.294768 966.574983 0.6134 0.00029707 1.003 0.00048573 1.6164 0.0007828 484.29540597959607 85.269 0.61833 84.767 84.365 84.983 -0.5015 67 42 3 0 0 0 0.013323 1 46667 46667 71.134 10.744 1 5561500 49795 8080 33679 34445 57933 57933 0.09035815108416045 QLLAILPEA 9 Unmodified _QLLAILPEA_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2948913574219 2 484.294768 966.574983 1.2421 0.00060156 -1.0752 -0.00052072 0.16691 8.0836E-05 484.2947366195223 94.165 0.76201 87.989 87.57 88.332 -6.1757 91 44 3 0 0 0 0.013323 5 62323 62205;62323;62419;62451;62578 71.134 24.279 1 12009000 49796 8080 33679 34445 57934;57935;57936;57937;57938 57935 0.09035815108416045 QLLDFERTL 9 Unmodified _QLLDFERTL_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.81201171875 2 567.811313 1133.60807 0.47066 0.00026725 1.4368 0.00081583 1.9075 0.0010831 567.8123081667011 68.066 0.29446 68.066 67.971 68.266 0 36 14 4 0 0 0 0.091924 1 38031 38031 34.932 6.4452 1 3071000 49797 5145;7136 33680 34446 57939 57939 0.04661397160475644 QLLDFERTL 9 Unmodified _QLLDFERTL_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000164086|Q16829-2|DUSP7 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8118896484375 2 567.811313 1133.60807 0.55188 0.00031336 0.1081 6.1382E-05 0.65998 0.00037474 567.8114696668675 68.589 0.29942 68.108 67.943 68.242 -0.48071 38 13 4 0 0 0 0.0061223 2 37443 37443;37550 114.2 48.967 1 11458000 49798 5145;7136 33680 34446 57940;57941 57940 0.04661397160475644 QLLDLMHTL 9 Oxidation (M) _QLLDLM(Oxidation (M))HTL_ QLLDLM(1)HTL QLLDLM(57)HTL 0 0 1 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2946166992188 2 550.294442 1098.57433 0.39247 0.00021597 0.12563 6.9132E-05 0.51809 0.0002851 550.2941780963253 63.651 0.17244 63.164 63.082 63.254 -0.48617 16 7 3 0 0 0 0.026094 1 34750 34750 57.471 28.985 1 2972100 49799 16108 33681 34447 57942 57942 1793 0.028986523970843336 QLLDLMHTL 9 Oxidation (M) _QLLDLM(Oxidation (M))HTL_ QLLDLM(1)HTL QLLDLM(64)HTL 0 0 1 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2935180664062 2 550.294442 1098.57433 0.6333 0.0003485 -0.83812 -0.00046121 -0.20482 -0.00011271 550.2939392748286 64.046 0.41154 63.561 63.432 63.844 -0.48512 62 20 5 0 0 0 0.019303 1 34912 34912 64.236 35.749 1 2917000 49800 16108 33681 34447 57943 57943 1793 0.028986523970843336 QLLDLMHTL 9 Unmodified _QLLDLMHTL_ 0 0 0 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MSMS AL20221201_MKP_PDAC_01 4 542.2959594726562 2 542.296985 1082.57942 NaN NaN NaN NaN NaN NaN NaN 98.018 1 91.842 91.342 92.342 -6.1757 0 0 0 0.023279 1 64975 64975 74.423 30.016 1 49801 16108 33681 34448 57944 57944 0.041429562596931646 QLLDQVEQI 9 Unmodified _QLLDQVEQI_ 0 0 0 nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4 nc|ENSG00000158604|Q7Z7H5-3|TMED4 nc|ENSG00000158604|Q7Z7H5-3|TMED4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.295654296875 2 543.295496 1084.57644 0.21006 0.00011413 0.11324 6.1525E-05 0.32331 0.00017565 543.29552357726 63.081 0.42594 63.081 62.846 63.272 0 62 17 5 0 0 0 0.00856 2 35220 35122;35220 100.37 18.758 1 50827000 49802 6598 33682 34449 57945;57946 57946 0.03753404406529626 QLLDQVEQI 9 Unmodified _QLLDQVEQI_ 0 0 0 nc|ENSG00000158604|Q7Z7H5-3|TMED4;nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4 nc|ENSG00000158604|Q7Z7H5-3|TMED4 nc|ENSG00000158604|Q7Z7H5-3|TMED4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2969360351562 2 543.295496 1084.57644 1.0422 0.00056622 0.65485 0.00035578 1.6971 0.000922 543.2959185299148 71.469 0.45319 65.293 65.066 65.52 -6.1757 41 22 2 0 0 0 0.0055767 2 46652 46652;46770 115.69 19.407 1 76049000 49803 6598 33682 34449 57947;57948 57947 0.03753404406529626 QLLDTLEQL 9 Unmodified _QLLDTLEQL_ 0 0 0 REV__ENSG00000155827|ENST00000389120|RNF20 REV__ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7975463867188 2 536.797872 1071.58119 0.40244 0.00021603 0.42129 0.00022615 0.82373 0.00044218 536.7980017771206 61.205 0.64355 61.205 60.767 61.411 0 81 27 5 0 0 0 0.094149 1 34069 34069 34.402 0 1 44442000 + 49804 21290 33683 34450 57949 57949 0.0482628854927043 QLLEGELETL 10 Unmodified _QLLEGELETL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8087768554688 2 572.808436 1143.60232 0.63378 0.00036303 0.53347 0.00030558 1.1672 0.00066861 572.808493247001 74.311 0.27821 74.311 74.15 74.428 0 31 12 3 0 0 0 0.024115 1 41327 41327 71.922 35.795 1 1602300 49805 3399 33684 34451 57950 57950 0.03626253858146811 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;nc|ENSG00000093144|Q9NTX5-3|ECHDC1 ENST00000368287.1_1_6:127648134-127664493:-|nuORF ENST00000368287.1_1_6:127648134-127664493:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.8339233398438 2 542.834257 1083.65396 0.18358 9.9653E-05 -0.29366 -0.00015941 -0.11008 -5.9756E-05 542.8340505462747 69.764 0.28886 69.764 69.598 69.887 0 36 13 4 0 0 0 0.018301 1 38869 38869 65.235 19.214 1 6159800 49806 1631 33685 34452 57951 57951 0.11548042342701592 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;nc|ENSG00000093144|Q9NTX5-3|ECHDC1 ENST00000368287.1_1_6:127648134-127664493:-|nuORF ENST00000368287.1_1_6:127648134-127664493:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8335571289062 2 542.834257 1083.65396 -0.12969 -7.0401E-05 -0.018617 -1.0106E-05 -0.14831 -8.0508E-05 542.8341218991769 70.19 0.32394 69.711 69.568 69.892 -0.47903 48 17 4 0 0 0 0.011968 1 38331 38331 74.929 28.908 1 15467000 49807 1631 33685 34452 57952 57952 0.11548042342701592 QLLEKVIEL 9 Unmodified _QLLEKVIEL_ 0 0 0 ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1;nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;nc|ENSG00000093144|Q9NTX5-4|ECHDC1;nc|ENSG00000093144|Q9NTX5-3|ECHDC1 ENST00000368287.1_1_6:127648134-127664493:-|nuORF ENST00000368287.1_1_6:127648134-127664493:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8347778320312 2 542.834257 1083.65396 1.0286 0.00055836 -0.55333 -0.00030037 0.47527 0.00025799 542.8339185495621 91.956 0.60471 85.78 85.416 86.02 -6.1757 93 34 3 0 0 0 0.00035873 3 60773 60653;60773;60902 147.06 50.774 1 34648000 49808 1631 33685 34452 57953;57954;57955 57954 0.11548042342701592 QLLELGRGVL 10 Unmodified _QLLELGRGVL_ 0 0 0 ENST00000483782.1_1_6:26091468-26093193:+|nuORF;nc|ENSG00000010704|Q30201-4|HFE;nc|ENSG00000010704|Q30201-2|HFE;nc|ENSG00000010704|Q30201-8|HFE;nc|ENSG00000010704|Q30201-5|HFE;nc|ENSG00000010704|Q30201-3|HFE;ENSG00000010704|ENST00000357618|HFE ENST00000483782.1_1_6:26091468-26093193:+|nuORF ENST00000483782.1_1_6:26091468-26093193:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3380126953125 2 549.337498 1096.66044 0.80515 0.0004423 0.3957 0.00021737 1.2008 0.00065967 549.3377767975716 90.384 0.65536 84.209 83.868 84.523 -6.1757 97 38 3 0 0 0 0.17804 1 59902 59902 49.554 7.7147 1 44043000 49809 426 33686 34453 57956 57956 0.11597980294095578 QLLEPIRDFEA 11 Unmodified _QLLEPIRDFEA_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.8531494140625 2 665.853709 1329.69287 -0.10081 -6.7127E-05 -0.59037 -0.0003931 -0.69119 -0.00046023 665.8533940582365 64.933 0.26563 64.933 64.786 65.052 0 20 12 2 0 0 0 0.29175 1 36201 36201 27.223 3.4335 1 1606500 49810 4959 33687 34454 57957 57957 0.04120722906441188 QLLEPQISF 9 Unmodified _QLLEPQISF_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7957153320312 2 537.795132 1073.57571 0.43917 0.00023619 0.44244 0.00023794 0.88161 0.00047413 537.7952197296561 67.405 0.30409 67.405 67.201 67.505 0 32 12 3 0 0 0 0.2324 2 37528 37528;37626 20.415 7.3721 1 3587700 49811 5601 33688 34455 57958;57959 57958 0.04186609757448423 QLLETFSAL 9 Unmodified _QLLETFSAL_ 0 0 0 REV__ENSG00000124713|ENST00000372808|GNMT REV__ENSG00000124713|ENST00000372808|GNMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2810668945312 2 511.281857 1020.54916 0.22922 0.0001172 0.51691 0.00026429 0.74613 0.00038148 511.28202890802805 37.651 0.24127 37.668 37.552 37.793 0.01704 23 11 3 0 0 0 0.2143 1 19979 19979 21.747 0 1 7847900 + 49812 19462 33689 34456 57960 57960 0.03970920866152028 QLLGPLPHPL 10 Unmodified _QLLGPLPHPL_ 0 0 0 REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF REV__ENST00000301015.13_2_16:88800318-88802577:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3302612304688 2 542.829309 1083.64407 0.24492 0.00013295 0.48283 0.00026209 0.72775 0.00039504 542.8295828499173 75.071 1.2807 75.117 74.366 75.647 0.045959 77 59 2 0 0 0 0.21952 1 41424 41424 21.747 4.6338 1 3025000 + 49813 25314 33690 34457 57961 57961 0.10558899127977384 QLLGPPAPQL 10 Unmodified _QLLGPPAPQL_ 0 0 0 ENST00000266643.5_1_12:58152865-58153108:+|nuORF ENST00000266643.5_1_12:58152865-58153108:+|nuORF ENST00000266643.5_1_12:58152865-58153108:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2816162109375 2 517.305667 1032.59678 NaN NaN NaN NaN NaN NaN NaN 77.538 1 77.538 77.038 78.038 0 0 0 0 0.96981 1 43106 43106 3.9444 0 1 49814 11344 33691 34458 57962 57962 0.08178619856971636 QLLGSAHEV 9 Unmodified _QLLGSAHEV_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2554321289062 2 477.256174 952.497795 -0.45634 -0.00021779 -0.046363 -2.2127E-05 -0.50271 -0.00023992 477.25613937546035 33.13 0.23482 33.13 33.008 33.243 0 29 11 3 0 0 0 0.018301 1 17334 17334 65.235 16.889 1 5131100 49815 9990 33692 34459 57963 57963 0.019645968920826817 QLLGSAHEV 9 Unmodified _QLLGSAHEV_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2565002441406 2 477.256174 952.497795 1.1741 0.00056037 -1.2233 -0.00058384 -0.049174 -2.3469E-05 477.25524802691575 37.868 0.26064 33.499 33.32 33.581 -4.3689 35 15 3 0 0 0 0.011968 1 22260 22260 74.929 20.155 1 18045000 49816 9990 33692 34459 57964 57964 0.019645968920826817 QLLHQLILVM 10 Unmodified _QLLHQLILVM_ 0 0 0 REV__ENST00000352251.7_2_13:39588472-39588577:-|nuORF REV__ENST00000352251.7_2_13:39588472-39588577:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2472839355469 3 403.245893 1206.71585 3.9004 0.0015728 0.53033 0.00021385 4.4308 0.0017867 403.2460222969955 98.79 0.51891 98.761 98.559 99.077 -0.028282 58 18 6 0 0 0 0.72196 1 54827 54827 0.15932 0 1 100440000 + 49817 25784 33693 34460 57965 57965 0.12076070490184065 QLLIKTVKL 9 Unmodified _QLLIKTVKL_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1056.887084960938 1 1055.71869 1054.71142 0.73305 0.0007739 0.93099 0.00098286 1.664 0.0017568 1056.7223015934653 81.137 0.30055 74.961 74.679 74.98 -6.1757 22 16 2 0 0 0 0.55144 1 53103 53103 4.3292 0 1 13658000 49818 1648 33694 34461 57966 57966 0.1862492933894373 QLLIWIPRL 9 Unmodified _QLLIWIPRL_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.0499267578125 3 384.581493 1150.72265 0.42099 0.0001619 1.765 0.00067879 2.186 0.00084069 384.5822573174399 38.736 0.41748 38.736 38.535 38.953 0 26 18 2 0 0 0 0.21904 1 20813 20813 0.26902 0 1 1109000 49819 1009 33695 34462 57967 57967 0.15331751433086538 QLLKKILIS 9 Unmodified _QLLKKILIS_ 0 0 0 ENST00000393249.6_1_12:76780405-76783428:-|nuORF ENST00000393249.6_1_12:76780405-76783428:-|nuORF ENST00000393249.6_1_12:76780405-76783428:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1056.723999023438 1 1055.71869 1054.71142 0.73305 0.0007739 0.93099 0.00098286 1.664 0.0017568 1056.7223015934653 81.137 0.30055 74.961 74.679 74.98 -6.1757 22 16 2 0 0 0 0.58865 2 53115 53115;53142 2.0598 0 1 13658000 49820 12700 33696 34463 57968;57969 57968 0.18624929338966467 QLLKSRTGEF 10 Unmodified _QLLKSRTGEF_ 0 0 0 ENSG00000127399|ENST00000359623|LRRC61 ENSG00000127399|ENST00000359623|LRRC61 ENSG00000127399|ENST00000359623|LRRC61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.830322265625 2 589.830037 1177.64552 1.1889 0.00070128 -0.91439 -0.00053934 0.27455 0.00016194 589.8295973177492 46.954 0.18272 46.921 46.814 46.996 -0.033417 14 8 2 0 0 0 0.68209 1 25293 25293 4.897 1.9018 1 2928400 49821 4003 33697 34464 57970 57970 0.0638048842608896 QLLLLLVLK 9 Unmodified _QLLLLLVLK_ 0 0 0 ENST00000381340.7_1_12:26868233-26868320:-|nuORF ENST00000381340.7_1_12:26868233-26868320:-|nuORF ENST00000381340.7_1_12:26868233-26868320:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.41943359375 1 1052.74418 1051.7369 0.23535 0.00024776 -0.71483 -0.00075254 -0.47949 -0.00050478 1052.7464590082022 26.338 0.079536 26.306 26.26 26.339 -0.031708 5 3 2 0 0 0 0.2191 1 13555 13555 0 0 1 7336600 49822 12617 33698 34465 57971 57971 0.2131040386134373 QLLLPEAE 8 Unmodified _QLLLPEAE_ 0 0 0 REV__ENSG00000253797|ENST00000521776|UTP14C REV__ENSG00000253797|ENST00000521776|UTP14C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7570495605469 2 456.755475 911.496398 NaN NaN NaN NaN NaN NaN NaN 81.577 1 81.577 81.077 82.077 0 0 0 0 0.97444 1 45273 45273 0.69038 0 1 + 49823 24516 33699 34466 57972 57972 0.03710962803336315 QLLLRPLLLQL 11 Unmodified _QLLLRPLLLQL_ 0 0 0 ENST00000606915.1_1_6:150184898-150185078:+|nuORF ENST00000606915.1_1_6:150184898-150185078:+|nuORF ENST00000606915.1_1_6:150184898-150185078:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.6309814453125 3 440.630624 1318.87004 NaN NaN NaN NaN NaN NaN NaN 38.301 1 38.301 37.801 38.801 0 0 0 0 0.94307 1 20447 20447 0.08335 0 1 49824 15856 33700 34467 57973 57973 0.22336223247225462 QLLMYIRSTI 10 Unmodified _QLLMYIRSTI_ 0 0 0 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 REV__nc|ENSG00000095319|Q5SRE5-2|NUP188 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.9036560058594 3 413.237286 1236.69003 -0.18471 -7.633E-05 1.2184 0.00050347 1.0336 0.00042714 413.2374293089139 29.841 0.13478 29.871 29.811 29.946 0.030106 6 4 2 0 0 0 0.23999 1 15625 15625 1.4551 0 1 660210 + 49825 17939 33701 34468 57974 57974 0.08115176247929412 QLLPCATLMPF 11 Unmodified _QLLPCATLMPF_ 0 0 0 REV__ENST00000525333.5_1_11:834595-834778:+|nuORF REV__ENST00000525333.5_1_11:834595-834778:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.2154846191406 3 411.883856 1232.62974 NaN NaN NaN NaN NaN NaN NaN 26.237 1 23.286 22.786 23.786 -2.9511 0 0 0 0.93224 1 14438 14438 4.7159 1.8726 1 + 49826 28352 33702 34469 57975 57975 0.02272742593163457 QLLQEPNF 8 Unmodified _QLLQEPNF_ 0 0 0 REV__ENST00000463740.5_1_9:136217349-136217397:+|nuORF REV__ENST00000463740.5_1_9:136217349-136217397:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7878112792969 2 494.758549 987.502546 0.64199 0.00031763 0.21192 0.00010485 0.85391 0.00042248 494.75858293324563 57.355 0.21387 56.866 56.75 56.964 -0.48974 15 9 2 0 0 0 8.7369 1 31110 31110 13.508 0 1 924560 + 49827 27358 33703 34470 57976 57976 0.008294810348502324 QLLRKKRRIFI 11 Unmodified _QLLRKKRRIFI_ 0 0 0 ENSG00000255501|ENST00000530950|CARD18 ENSG00000255501|ENST00000530950|CARD18 ENSG00000255501|ENST00000530950|CARD18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 735.9911499023438 2 735.990812 1469.96707 NaN NaN NaN NaN NaN NaN NaN 90.872 1 90.909 90.409 91.409 0.036499 0 0 0 0.94307 1 50547 50547 0.30703 0.30703 1 49828 10791 33704 34471 57977 57977 0.2508863024686434 QLLRMRVEND 10 Unmodified _QLLRMRVEND_ 0 0 0 REV__nc|ENSG00000123124|Q9H0M0-6|WWP1 REV__nc|ENSG00000123124|Q9H0M0-6|WWP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3383178710938 2 637.337704 1272.66085 NaN NaN NaN NaN NaN NaN NaN 66.522 1 66.522 66.022 67.022 0 0 0 0 0.97855 1 37101 37101 2.9952 0 1 + 49829 19370 33705 34472 57978 57978 0.03543031951630837 QLLWLVRLRFY 11 Unmodified _QLLWLVRLRFY_ 0 0 0 REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.9700622558594 3 502.96964 1505.88709 1.1652 0.00058608 -0.33212 -0.00016705 0.83311 0.00041903 502.9692454123583 87.625 0.50957 81.449 81.237 81.747 -6.1757 87 27 4 0 0 0 0.73115 2 57717 57717;57840 0.45452 0.046251 1 52148000 + 49830 26046 33706 34473 57979;57980 57979 0.15438143853020847 QLLWLVRLRFY 11 Unmodified _QLLWLVRLRFY_ 0 0 0 REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 754.4545288085938 2 753.950821 1505.88709 1.0926 0.00082375 -0.64159 -0.00048373 0.45099 0.00034002 754.4517160105612 87.585 0.5405 81.409 81.112 81.652 -6.1757 43 29 2 0 0 0 0.71341 1 57759 57759 2.9952 0.26005 1 13063000 + 49831 26046 33706 34473 57981 57981 0.15438143853020847 QLLWLVRLRFY 11 Unmodified _QLLWLVRLRFY_ 0 0 0 REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 754.4545288085938 2 753.950821 1505.88709 1.0926 0.00082375 -0.64159 -0.00048373 0.45099 0.00034002 754.4517160105612 87.585 0.5405 81.409 81.112 81.652 -6.1757 43 29 2 0 0 0 0.30496 1 57759 57759 2.9952 0.26005 1 13063000 + 49832 26046 33706 34473 57982 57982 0.15438143853020847 QLMEQVAQL 9 Oxidation (M) _QLM(Oxidation (M))EQVAQL_ QLM(1)EQVAQL QLM(120)EQVAQL 0 0 1 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2767944335938 2 538.276249 1074.53795 0.3615 0.00019459 0.10898 5.866E-05 0.47048 0.00025325 538.2763802419671 46.71 0.29466 46.71 46.544 46.839 0 43 13 4 0 0 0 0.0055767 2 25493 25493;25600 115.69 67.943 1 39326000 49833 10331 33707 34474 57983;57984 57983 1685 0.0036577550035872264 QLMEQVAQL 9 Oxidation (M) _QLM(Oxidation (M))EQVAQL_ QLM(1)EQVAQL QLM(100)EQVAQL 0 0 1 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.276123046875 2 538.276249 1074.53795 0.15925 8.572E-05 -0.79298 -0.00042684 -0.63373 -0.00034112 538.2759689445558 46.999 0.37313 46.999 46.839 47.212 0 54 17 4 0 0 0 0.0088174 1 25714 25714 103.75 59.976 1 46528000 49834 10331 33707 34474 57985 57985 1685 0.0036577550035872264 QLMEQVAQL 9 Unmodified _QLMEQVAQL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2803344726562 2 530.278792 1058.54303 0.50171 0.00026604 0.30721 0.0001629 0.80891 0.00042895 530.2789040021748 61.184 0.36654 61.184 60.999 61.366 0 38 15 3 0 0 0 0.0082661 2 34085 34085;34189 92.491 52.534 1 3871000 49835 10331 33707 34475 57986;57987 57986 0.016100793629675536 QLMEQVAQL 9 Unmodified _QLMEQVAQL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2808837890625 2 530.278792 1058.54303 0.15964 8.4655E-05 1.522 0.0008071 1.6817 0.00089175 530.2795567985291 61.732 0.30847 61.245 61.118 61.426 -0.48764 23 14 2 0 0 0 0.0088174 1 33622 33622 103.75 61.909 1 3779300 49836 10331 33707 34475 57988 57988 0.016100793629675536 QLMEQVAQL 9 Unmodified _QLMEQVAQL_ 0 0 0 nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 nc|ENSG00000204843|Q14203-5|DCTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2789306640625 2 530.278792 1058.54303 0.99781 0.00052912 -0.90051 -0.00047752 0.097298 5.1595E-05 530.2784584515289 69.084 0.56245 62.908 62.612 63.174 -6.1757 68 30 3 0 0 0 0.0055767 3 45100 44978;45100;45224 115.69 67.346 1 81046000 49837 10331 33707 34475 57989;57990;57991 57990 0.016100793629675536 QLMKWRLQRRY 11 Unmodified _QLMKWRLQRRY_ 0 0 0 REV__nc|ENSG00000173805|P54257-3|HAP1 REV__nc|ENSG00000173805|P54257-3|HAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 789.4434814453125 2 789.445911 1576.87727 NaN NaN NaN NaN NaN NaN NaN 85.437 1 85.498 84.998 85.998 0.061638 0 0 0 0.94307 1 47295 47295 0.30703 0.30703 1 + 49838 22749 33708 34476 57992 57992 0.11190632575971904 QLMLLKFLRYI 11 Unmodified _QLMLLKFLRYI_ 0 0 0 ENST00000563094.5_1_16:69200987-69201092:+|nuORF;ENST00000562237.5_1_16:69200987-69202772:+|nuORF ENST00000563094.5_1_16:69200987-69201092:+|nuORF ENST00000563094.5_1_16:69200987-69201092:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.9597778320312 3 479.959864 1436.85776 1.0528 0.00050532 0.82954 0.00039815 1.8824 0.00090346 480.294783618713 91.564 0.36259 85.388 85.188 85.55 -6.1757 31 19 2 0 0 0 0.69509 1 60464 60464 4.7159 0.30977 1 18956000 49839 15339 33709 34477 57993 57993 0.15680863512534415 QLMLVRGN 8 Unmodified _QLMLVRGN_ 0 0 0 REV__ENST00000502346.1_1_5:82352934-82360830:-|nuORF REV__ENST00000502346.1_1_5:82352934-82360830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7621154785156 2 465.763112 929.511671 0.267 0.00012436 -0.69836 -0.00032527 -0.43136 -0.00020091 465.76203977835496 73.581 0.35049 73.625 73.405 73.755 0.043983 43 15 4 0 0 0 0.80722 1 40507 40507 2.3027 0 1 5619600 + 49840 28018 33710 34478 57994 57994 0.04409551119533717 QLMREVLLL 9 Oxidation (M) _QLM(Oxidation (M))REVLLL_ QLM(1)REVLLL QLM(68)REVLLL 0 0 1 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8341064453125 2 565.833734 1129.65292 0.62118 0.00035149 0.30299 0.00017144 0.92418 0.00052293 565.8339324437733 64.83 0.47208 64.345 64.102 64.574 -0.48512 71 21 4 0 0 0 0.015445 2 35414 35309;35414 68.081 26.499 1 14389000 49841 7082 33711 34479 57995;57996 57996 1216 0.09327504702173428 QLMREVLLL 9 Oxidation (M) _QLM(Oxidation (M))REVLLL_ QLM(1)REVLLL QLM(76)REVLLL 0 0 1 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8341674804688 2 565.833734 1129.65292 1.1091 0.00062759 -0.56664 -0.00032063 0.5425 0.00030696 565.833326377107 64.395 0.43266 64.384 64.154 64.586 -0.010529 37 21 2 0 0 0 0.011671 2 35207 35207;35317 75.761 27.415 1 8736900 49842 7082 33711 34479 57997;57998 57997 1216 0.09327504702173428 QLMREVLLL 9 Oxidation (M) _QLM(Oxidation (M))REVLLL_ QLM(1)REVLLL QLM(54)REVLLL 0 0 1 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MSMS AL20221201_MKP_PDAC_01 4 565.8347778320312 2 565.833734 1129.65292 NaN NaN NaN NaN NaN NaN NaN 69.226 1 63.05 62.55 63.55 -6.1757 0 0 0 0.059498 1 45207 45207 53.833 6.0841 1 49843 7082 33711 34479 57999 57999 1216 0.09327504702173428 QLMREVLLL 9 Unmodified _QLMREVLLL_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8365478515625 2 557.836277 1113.658 -0.1743 -9.7229E-05 1.0932 0.0006098 0.91886 0.00051258 557.8369149242035 77.107 0.28949 76.624 76.476 76.765 -0.4826 30 12 3 0 0 0 0.028475 1 42190 42190 56.177 16.227 1 1229100 49844 7082 33711 34480 58000 58000 0.10571808564782259 QLMREVLLL 9 Unmodified _QLMREVLLL_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8373413085938 2 557.836277 1113.658 0.43684 0.00024368 0.13467 7.5126E-05 0.57151 0.00031881 557.8364459164936 76.533 0.30312 76.58 76.445 76.748 0.047951 21 12 2 0 0 0 0.0090524 1 42232 42232 85.642 18.298 1 3318500 49845 7082 33711 34480 58001 58001 0.10571808564782259 QLMREVLLL 9 Unmodified _QLMREVLLL_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8375244140625 2 557.836277 1113.658 1.3841 0.00077209 -0.070663 -3.9418E-05 1.3134 0.00073267 557.8364473444982 97.827 0.33859 91.652 91.553 91.891 -6.1757 51 22 4 0 0 0 0.0059585 1 64796 64796 114.65 47.305 1 200460000 49846 7082 33711 34480 58002 58002 0.10571808564782259 QLMVEHTP 8 Unmodified _QLMVEHTP_ 0 0 0 ENSG00000169223|ENST00000303127|LMAN2;ENST00000504071.1_1_5:176759089-176761465:-|nuORF ENSG00000169223|ENST00000303127|LMAN2 ENSG00000169223|ENST00000303127|LMAN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7394714355469 2 477.739302 953.464052 NaN NaN NaN NaN NaN NaN NaN 26.728 1 26.728 26.228 27.228 0 0 0 0 0.97444 1 13751 13751 2.5775 0 1 49847 7851 33712 34481 58003 58003 -0.014541478713113065 QLNDVAHLV 9 Unmodified _QLNDVAHLV_ 0 0 0 ENST00000588511.5_1_19:13223619-13226880:-|nuORF;ENST00000593157.5_1_19:13216299-13227549:-|nuORF;nc|ENSG00000104907|Q9NXH9-2|TRMT1;ENSG00000104907|ENST00000357720|TRMT1 ENST00000588511.5_1_19:13223619-13226880:-|nuORF ENST00000588511.5_1_19:13223619-13226880:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2380065917969 2 504.777274 1007.53999 0.50986 0.00025736 -0.71772 -0.00036229 -0.20786 -0.00010492 504.77682501810875 50.469 0.23394 50.469 50.369 50.603 0 22 10 3 0 0 0 0.20727 1 27824 27824 7.9102 1.7044 1 3471000 49848 2258 33713 34482 58004 58004 0.036525723004729116 QLNEKVAQL 9 Unmodified _QLNEKVAQL_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7990112304688 2 521.798206 1041.58186 0.58011 0.0003027 -0.7947 -0.00041467 -0.21459 -0.00011197 521.7977041751986 36.115 0.17579 36.115 36.01 36.186 0 14 8 2 0 0 0 0.019303 1 19137 19137 64.236 0 1 4709800 49849 259;13088 33714 34483 58005 58005 0.0627312798899311 QLNGILLHL 9 Unmodified _QLNGILLHL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8138122558594 2 510.813659 1019.61277 0.40212 0.00020541 0.033919 1.7326E-05 0.43604 0.00022273 510.8135904976121 77.38 0.43121 77.43 77.173 77.605 0.050102 47 17 4 0 0 0 0.016494 2 42657 42657;42763 67.035 27.078 1 15880000 49850 2759 33715 34484 58006;58007 58006 0.10374326093915442 QLNKLLTFSSY 11 Unmodified _QLNKLLTFSSY_ 0 0 0 ENST00000487204.1_1_X:50085140-50094699:+|nuORF;nc|ENSG00000147082|Q8WWL7-2|CCNB3;ENSG00000147082|ENST00000376042|CCNB3 ENST00000487204.1_1_X:50085140-50094699:+|nuORF ENST00000487204.1_1_X:50085140-50094699:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3604125976562 2 657.358628 1312.7027 0.97807 0.00064295 0.33225 0.0002184 1.3103 0.00086135 657.3589865720342 94.14 0.65987 87.965 87.622 88.282 -6.1757 93 38 3 0 0 0 0.48615 1 62204 62204 17.113 4.8722 1 27120000 49851 5817 33716 34485 58008 58008 0.058859109117975095 QLNMSFVM 8 Unmodified _QLNMSFVM_ 0 0 0 REV__ENSG00000173335|ENST00000376971|CST9 REV__ENSG00000173335|ENST00000376971|CST9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.7802429199219 2 485.230256 968.445959 1.4871 0.00072157 -1.1841 -0.00057455 0.30298 0.00014702 485.22955188061667 33.869 0.28824 29.884 29.714 30.002 -3.9853 21 15 2 0 0 0 8.7369 1 19371 19371 14.582 1.0738 1 3749600 + 49852 22724 33717 34486 58009 58009 -0.039526061176729854 QLNRLNSQI 9 Unmodified _QLNRLNSQI_ 0 0 0 ENSG00000050730|ENST00000057513|TNIP3;nc|ENSG00000050730|Q96KP6-2|TNIP3;nc|ENSG00000050730|Q96KP6-3|TNIP3;ENST00000511909.5_1_4:122053805-122071269:-|nuORF ENSG00000050730|ENST00000057513|TNIP3 ENSG00000050730|ENST00000057513|TNIP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.830322265625 2 543.306729 1084.59891 0.25048 0.00013609 3.3488 0.0018194 3.5993 0.0019555 543.8107190260423 74.907 0.1721 74.953 74.876 75.048 0.045967 12 7 2 0 0 0 0.16785 1 41297 41297 23.148 1.4018 1 820700 49853 726 33718 34487 58010 58010 0.059990485947992056 QLNRRYQNI 9 Unmodified _QLNRRYQNI_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8321533203125 2 602.830903 1203.64725 0.48502 0.00029239 1.9554 0.0011788 2.4405 0.0014712 602.8319778833305 86.374 0.25291 85.871 85.791 86.044 -0.50318 17 10 2 0 0 0 0.5029 1 47280 47280 7.2892 0 1 575240 49854 265 33719 34488 58011 58011 0.053575422347194035 QLNVRVLQL 9 Unmodified _QLNVRVLQL_ 0 0 0 nc|ENSG00000101004|Q9Y2I6-2|NINL;ENSG00000101004|ENST00000278886|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL nc|ENSG00000101004|Q9Y2I6-2|NINL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5606994628906 3 361.560869 1081.66078 NaN NaN NaN NaN NaN NaN NaN 31.533 1 31.563 31.063 32.063 0.030106 0 0 0 0.7453 1 16527 16527 4.897 0 1 49855 1904 33720 34489 58012 58012 0.12321400013956918 QLPCEDDDLI 10 Unmodified _QLPCEDDDLI_ 0 0 0 REV__nc|ENSG00000130396|P55196-2|AFDN REV__nc|ENSG00000130396|P55196-2|AFDN MSMS AL20221201_MKP_PDAC_01 4 387.5089111328125 3 387.509511 1159.5067 NaN NaN NaN NaN NaN NaN NaN 57.956 1 51.928 51.428 52.428 -6.0275 0 0 0 0.95103 1 37105 37105 3.0723 0.22898 1 + 49856 19719 33721 34490 58013 58013 -0.06666842324398203 QLPKLQHSF 9 Unmodified _QLPKLQHSF_ 0 0 0 REV__ENSG00000155754|ENST00000439140|C2CD6 REV__ENSG00000155754|ENST00000439140|C2CD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.8013916015625 2 549.308741 1096.60293 0.39277 0.00021575 -2.0896 -0.0011478 -1.6968 -0.00093206 549.3080817856421 52.74 0.29775 52.288 52.121 52.419 -0.45173 25 14 2 0 0 0 0.39863 1 28445 28445 12.532 0 1 4025300 + 49857 21285 33722 34491 58014 58014 0.05849138088501604 QLPKQCTFRF 10 Carbamidomethyl (C) _QLPKQC(Carbamidomethyl (C))TFRF_ QLPKQC(1)TFRF QLPKQC(50)TFRF 0 1 0 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 ENSG00000164916|ENST00000328914|FOXK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2327575683594 3 442.232535 1323.67578 1.6652 0.00073642 -0.44429 -0.00019648 1.2209 0.00053994 442.23224623046826 47.76 0.42924 42.526 42.327 42.756 -5.2339 68 25 4 0 0 0 0.084474 2 29574 29574;29706 50.13 46.284 1 43804000 49858 7262 33723 34492 58015;58016 58015 714 0.026885238195973216 QLPLIKVG 8 Unmodified _QLPLIKVG_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MSMS AL20221201_MKP_PDAC_01 4 434.2879943847656 2 434.286746 866.558939 NaN NaN NaN NaN NaN NaN NaN 104.81 1 98.639 98.139 99.139 -6.1757 0 0 0 0.97444 1 70165 70165 0.69038 0 1 + 49859 21090 33724 34493 58017 58017 0.12032153662187284 QLPLVVDAIC 10 Unmodified _QLPLVVDAIC_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2643432617188 2 535.79936 1069.58417 0.32096 0.00017197 -3.9853 -0.0021353 -3.6643 -0.0019634 535.7970792218655 94.748 0.23405 94.328 94.213 94.447 -0.42043 22 10 3 0 0 0 0.23862 1 51779 51779 3.9444 0 1 393070 49860 9403 33725 34494 58018 58018 0.05215840402433969 QLPPLLLHPQL 11 Unmodified _QLPPLLLHPQL_ 0 0 0 REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF REV__ENST00000540386.5_1_11:66131737-66133984:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.598388671875 3 423.595691 1267.76524 3.1241 0.0013234 1.4385 0.00060935 4.5627 0.0019327 423.5962138411797 99.687 0.27014 99.651 99.529 99.799 -0.036301 26 9 4 0 0 0 0.71618 1 55359 55359 1.1098 0.70149 1 30185000 + 49861 28579 33726 34495 58019 58019 0.14207101770671215 QLPPRLFTL 9 Unmodified _QLPPRLFTL_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MSMS AL20221201_MKP_PDAC_01 4 542.82958984375 2 542.829309 1083.64407 NaN NaN NaN NaN NaN NaN NaN 93.701 1 87.525 87.025 88.025 -6.1757 0 0 0 0.26013 1 62035 62035 29.082 7.3349 1 49862 4255 33727 34496 58020 58020 0.10558899127977384 QLPQPDVFPLF 11 Unmodified _QLPQPDVFPLF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.8511962890625 2 650.850438 1299.68632 0.98026 0.000638 -0.3437 -0.0002237 0.63656 0.0004143 650.8503477688371 101.27 0.097824 95.098 95.046 95.144 -6.1757 12 5 3 0 0 0 0.00099783 1 67949 67949 92.653 66.385 1 20917000 49863 10908 33728 34497 58021 58021 0.048468297457020526 QLPRADAI 8 Unmodified _QLPRADAI_ 0 0 0 nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF nc|ENSG00000166762|Q96P56-3|CATSPER2 nc|ENSG00000166762|Q96P56-3|CATSPER2 MSMS AL20221201_MKP_PDAC_01 4 442.2532043457031 2 442.253434 882.492316 NaN NaN NaN NaN NaN NaN NaN 93.734 1 87.559 87.059 88.059 -6.1757 0 0 0 0.97444 1 62060 62060 5.2307 0 1 49864 7528 33729 34498 58022 58022 0.04636918100254661 QLPRFVRVN 9 Unmodified _QLPRFVRVN_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000130305|Q96P11-3|NSUN5;ENST00000471461.5_1_7:72717735-72721871:-|nuORF nc|ENSG00000130305|Q96P11-5|NSUN5 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.0382385253906 3 376.89273 1127.65636 0.037317 1.4065E-05 -2.1466 -0.00080905 -2.1093 -0.00079499 376.89201120593464 17.201 0.050144 17.206 17.175 17.225 0.0050564 6 3 2 0 0 0 0.60485 1 8653 8653 1.0715 0.3738 1 220270 49865 4201 33730 34499 58023 58023 0.09763935591035988 QLPYFPSAL 9 Unmodified _QLPYFPSAL_ 0 0 0 REV__ENST00000357749.6_1_X:85117728-85117830:-|nuORF REV__ENST00000357749.6_1_X:85117728-85117830:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2792358398438 2 518.279118 1034.54368 2.5289 0.0013107 -0.92909 -0.00048153 1.5998 0.00082912 518.2782882700897 96.837 0.39667 96.83 96.562 96.958 -0.007019 25 14 2 0 0 0 0.21564 1 53834 53834 3.9444 0.3479 1 2160600 + 49866 25859 33731 34500 58024 58024 0.027792420743253388 QLQEELEKV 9 Unmodified _QLQEELEKV_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8012084960938 2 558.300778 1114.587 -0.12052 -6.7288E-05 -1.1298 -0.00063076 -1.2503 -0.00069804 558.2996175774124 40.974 0.10519 40.974 40.919 41.024 0 10 7 2 0 0 0 0.094631 1 22030 22030 32.305 3.8186 1 6463800 49867 2508 33732 34501 58025 58025 0.034293870609417354 QLQIDTLHL 9 Unmodified _QLQIDTLHL_ 0 0 0 REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.8063354492188 2 540.806031 1079.59751 0.14168 7.6623E-05 1.7132 0.00092649 1.8548 0.0010031 540.8066444290401 65.234 0.20284 65.234 65.093 65.296 0 12 7 2 0 0 0 0.37804 1 36372 36372 13.508 0 1 548280 + 49868 24263 33733 34502 58026 58026 0.060894145060501614 QLQIDTLHL 9 Unmodified _QLQIDTLHL_ 0 0 0 REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.806031 1079.59751 0.14168 7.6623E-05 1.7132 0.00092649 1.8548 0.0010031 540.8066444290401 65.234 0.20284 65.234 65.093 65.296 0 0.04872 5.398E-05 NaN 13.508 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 548280 + 49869 24263 33733 34502 0.060894145060501614 QLQIDTLHL 9 Unmodified _QLQIDTLHL_ 0 0 0 REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF REV__ENST00000445499.2_1_3:45730957-45754662:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.806031 1079.59751 -0.059214 -3.2023E-05 1.3569 0.00073384 1.2977 0.00070181 540.8066821963664 65.621 0.18114 65.137 65.041 65.222 -0.48428 -0.04872 -0.00033133 NaN 13.508 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 761600 + 49870 24263 33733 34502 0.060894145060501614 QLQLHEQFRI 10 Unmodified _QLQLHEQFRI_ 0 0 0 REV__CLTC-VMP1|9|fusion REV__CLTC-VMP1|9|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.9102172851562 3 437.910449 1310.70952 NaN NaN NaN NaN NaN NaN NaN 25.403 1 25.427 24.927 25.927 0.024429 0 0 0 0.97302 1 13145 13145 1.7423 0 1 + 49871 16822 33734 34503 58027 58027 0.06659268583030098 QLQPDNSTLTW 11 Unmodified _QLQPDNSTLTW_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8824157714844 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 90.201 1 89.699 89.199 90.199 -0.50171 0 0 0 0.94337 1 49308 49308 0.094841 0 1 49872 5033 33735 34504 58028 58028 -0.013567270243811436 QLQQADHR 8 Unmodified _QLQQADHR_ 0 0 0 REV__ENST00000381639.3_1_7:32973453-32982633:-|nuORF REV__ENST00000381639.3_1_7:32973453-32982633:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2557678222656 2 498.254497 994.494441 NaN NaN NaN NaN NaN NaN NaN 73.302 1 73.302 72.802 73.802 0 0 0 0 0.97444 1 40806 40806 2.0598 0.57785 1 + 49873 21930 33736 34505 58029 58029 -0.003026531619184425 QLQQLDQAIQI 11 Unmodified _QLQQLDQAIQI_ 0 0 0 REV__nc|ENSG00000143190|P14859-3|POU2F1 REV__nc|ENSG00000143190|P14859-3|POU2F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5762023925781 3 433.241865 1296.70376 NaN NaN NaN NaN NaN NaN NaN 27.62 1 27.648 27.148 28.148 0.028664 0 0 0 0.93669 1 14358 14358 2.2527 0 1 + 49874 29674 33737 34506 58030 58030 0.06728125280710628 QLQTLAQQL 9 Unmodified _QLQTLAQQL_ 0 0 0 REV__ENSG00000166025|ENST00000433060|AMOTL1 REV__ENSG00000166025|ENST00000433060|AMOTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7957153320312 2 521.798206 1041.58186 1.423 0.00074252 -1.3284 -0.00069314 0.094624 4.9375E-05 521.79722385985 40.905 0.2361 36.297 36.18 36.416 -4.6079 21 14 2 0 0 0 0.08691 1 24489 24489 36.127 3.8215 1 6761100 + 49875 22078 33738 34507 58031 58031 0.0627312798899311 QLQVPFAAH 9 Unmodified _QLQVPFAAH_ 0 0 0 ENST00000397420.7_1_11:838256-838586:+|nuORF;ENST00000525181.1_1_11:838256-839661:+|nuORF ENST00000397420.7_1_11:838256-838586:+|nuORF ENST00000397420.7_1_11:838256-838586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2793884277344 2 505.774534 1009.53451 0.35878 0.00018146 2.8249 0.0014288 3.1837 0.0016102 506.278036957921 79.538 0.82307 79.593 79.079 79.902 0.054977 90 31 5 0 0 0 0.32871 1 44073 44073 15.847 1.9411 1 16352000 49876 12822 33739 34508 58032 58032 0.030128935086509046 QLQVTNLLEY 10 Unmodified _QLQVTNLLEY_ 0 0 0 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 ENSG00000125815|ENST00000246012|CST8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.830078125 2 610.829703 1219.64485 0.7619 0.00046539 -0.15807 -9.6551E-05 0.60384 0.00036884 610.8296713842554 53.417 0.44798 47.613 47.383 47.831 -5.8042 78 28 4 0 0 0 0.0022539 1 33797 33797 107.19 12.278 1 111630000 49877 3886 33740 34509 58033 58033 0.04381648986372966 QLRAACYL 8 Unmodified _QLRAACYL_ 0 0 0 ENST00000408953.3_1_5:159826673-159826808:-|nuORF ENST00000408953.3_1_5:159826673-159826808:-|nuORF ENST00000408953.3_1_5:159826673-159826808:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2491455078125 2 469.249837 936.485122 NaN NaN NaN NaN NaN NaN NaN 18.635 1 18.635 18.135 19.135 0 0 0 0 0.97444 1 9278 9278 0.79363 0 1 49878 12949 33741 34510 58034 58034 0.014338622281798052 QLRAKMILF 9 Unmodified _QLRAKMILF_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3409423828125 2 560.338987 1118.66342 2.4664 0.001382 0.63536 0.00035602 3.1017 0.001738 560.3391742012174 94.871 1.0934 94.885 94.568 95.661 0.014244 134 41 5 0 0 0 0.60485 1 52912 52912 2.0598 1.2661 1 228320000 49879 3208 33742 34511 58035 58035 0.10883532147249753 QLREYQIL 8 Unmodified _QLREYQIL_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.8009033203125 2 531.800749 1061.58694 0.62526 0.00033251 -0.55023 -0.00029261 0.07503 3.9901E-05 531.800423771572 53.588 0.53041 53.588 53.327 53.858 0 71 24 4 0 0 0 0.64853 1 29672 29672 21.747 0 1 70021000 + 49880 18635 33743 34512 58036 58036 0.058614318515992636 QLREYQIL 8 Unmodified _QLREYQIL_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8012084960938 2 531.800749 1061.58694 0.25333 0.00013472 0.97617 0.00051913 1.2295 0.00065385 531.8013415037126 54.037 0.5348 53.57 53.306 53.841 -0.46664 83 25 4 0 0 0 0.58902 1 29319 29319 26.884 3.7352 1 58386000 + 49881 18635 33743 34512 58037 58037 0.058614318515992636 QLREYQIL 8 Unmodified _QLREYQIL_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8025512695312 2 531.800749 1061.58694 0.85092 0.00045252 1.1451 0.00060894 1.996 0.0010615 531.8014273396005 59.653 0.57654 53.538 53.219 53.796 -6.1147 85 32 4 0 0 0 0.66338 1 38282 38282 20.454 0.039092 1 310120000 + 49882 18635 33743 34512 58038 58038 0.058614318515992636 QLRKLLKRLKK 11 Unmodified _QLRKLLKRLKK_ 0 0 0 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 712.50244140625 2 712.501013 1422.98747 NaN NaN NaN NaN NaN NaN NaN 19.165 1 19.188 18.688 19.688 0.023106 0 0 0 0.9435 1 9650 9650 0 0 1 + 49883 23846 33744 34513 58039 58039 0.2928980090666755 QLRKLQEYTIF 11 Unmodified _QLRKLQEYTIF_ 0 0 0 REV__nc|ENSG00000102078|O95258-2|SLC25A14 REV__nc|ENSG00000102078|O95258-2|SLC25A14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2731323242188 3 480.273276 1437.798 0.3511 0.00016862 0.31634 0.00015193 0.66744 0.00032055 480.6077830557938 61.033 0.27935 60.989 60.825 61.104 -0.04351 31 13 3 0 0 0 0.62014 1 33273 33273 10.315 4.4471 1 9115000 + 49884 18219 33745 34514 58040 58040 0.09661264102828682 QLRLPTDTL 9 Unmodified _QLRLPTDTL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.806396484375 2 528.806031 1055.59751 0.15478 8.1847E-05 0.77076 0.00040758 0.92554 0.00048943 528.8063586624281 56.414 0.17773 56.414 56.341 56.518 0 12 7 2 0 0 0 0.015688 1 31399 31399 85.272 39.251 1 1694100 49885 6889 33746 34515 58041 58041 0.07193414506014051 QLRLPTDTL 9 Unmodified _QLRLPTDTL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8070678710938 2 528.806031 1055.59751 -0.12786 -6.7613E-05 1.0617 0.00056144 0.93385 0.00049383 528.8065457619672 56.902 0.31804 56.416 56.205 56.523 -0.48554 40 14 4 0 0 0 0.0020017 1 30855 30855 147.06 68.91 1 11794000 49886 6889 33746 34515 58042 58042 0.07193414506014051 QLRLPTDTL 9 Unmodified _QLRLPTDTL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8048706054688 2 528.806031 1055.59751 2.0373 0.0010773 -1.855 -0.00098092 0.1823 9.6401E-05 528.8042660859365 62.799 0.39398 56.624 56.442 56.836 -6.1757 45 19 3 0 0 0 0.0088668 1 40564 40564 96.111 37.432 1 24249000 49887 6889 33746 34515 58043 58043 0.07193414506014051 QLRPSGSSL 9 Unmodified _QLRPSGSSL_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MSMS AL20221201_MKP_PDAC_01 4 472.7611389160156 2 472.761623 943.508694 NaN NaN NaN NaN NaN NaN NaN 33.812 1 29.827 29.327 30.327 -3.9853 0 0 0 0.083082 1 19423 19423 47.749 1.7277 1 + 49888 22217 33747 34516 58044 58044 0.03467999266388233 QLRRGKQSI 9 Unmodified _QLRRGKQSI_ 0 0 0 REV__ENSG00000220201|ENST00000707000|ZGLP1 REV__ENSG00000220201|ENST00000707000|ZGLP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8296508789062 2 543.330539 1084.64652 0.22005 0.00011956 0.46366 0.00025192 0.68371 0.00037148 543.3307977099273 75.425 0.73946 75.471 75.147 75.886 0.045967 49 34 2 0 0 0 0.18882 1 41536 41536 15.847 15.847 1 1585200 + 49889 24356 33748 34517 58045 58045 0.10758747585668971 QLRRWFTLWRW 11 Unmodified _QLRRWFTLWRW_ 0 0 0 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 REV__nc|ENSG00000164284|Q8TAA5-2|GRPEL2 MSMS AL20221201_MKP_PDAC_01 4 824.4537963867188 2 824.454594 1646.89463 NaN NaN NaN NaN NaN NaN NaN 72.048 1 65.873 65.373 66.373 -6.1757 0 0 0 0.94313 1 47143 47143 0.26902 0.26902 1 + 49890 29749 33749 34518 58046 58046 0.09706296173294504 QLRTKILWIP 10 Unmodified _QLRTKILWIP_ 0 0 0 REV__nc|ENSG00000114120|Q96CQ1-3|SLC25A36 REV__nc|ENSG00000114120|Q96CQ1-3|SLC25A36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.3966674804688 2 634.39789 1266.78123 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.74 103.24 104.24 -0.048737 0 0 0 1.0019 1 57637 57637 0.45834 0 1 + 49891 18903 33750 34519 58047 58047 0.15850808007553496 QLSDVAEKL 9 Unmodified _QLSDVAEKL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7769775390625 2 501.776939 1001.53933 0.99854 0.00050104 0.79462 0.00039872 1.7932 0.00089977 501.7769165611382 42.613 0.46161 42.613 42.238 42.7 0 40 22 3 0 0 0 0.011291 1 23051 23051 76.825 11.59 1 7616900 49892 8367 33751 34520 58048 58048 0.038617328607642776 QLSHEEQLRSQ 11 Unmodified _QLSHEEQLRSQ_ 0 0 0 REV__ENSG00000087502|ENST00000360150|ERGIC2 REV__ENSG00000087502|ENST00000360150|ERGIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.5623779296875 3 452.228507 1353.66369 -0.64704 -0.00029261 0.33153 0.00014993 -0.31551 -0.00014268 452.2287796769534 18.067 0.12244 18.081 18.016 18.139 0.013865 48 25 3 0 0 0 0.70069 1 9016 9016 1.9275 0 1 2088200 + 49893 17791 33752 34521 58049 58049 0.0010057861013592628 QLSKQLLAY 9 Unmodified _QLSKQLLAY_ 0 0 0 nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2;ENST00000547809.5_1_12:105570964-105626916:-|nuORF nc|ENSG00000136044|Q8NEU8-2|APPL2 nc|ENSG00000136044|Q8NEU8-2|APPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3128662109375 2 532.310949 1062.60735 3.1803 0.0016929 0.35786 0.00019049 3.5382 0.0018834 532.311127880055 97.644 0.60083 97.625 97.384 97.985 -0.018188 64 21 4 0 0 0 0.34134 2 54274 54171;54274 15.248 15.248 1 115100000 49894 4779 33753 34522 58050;58051 58051 0.07854602511406483 QLSPRLLEV 9 Unmodified _QLSPRLLEV_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8174438476562 2 527.816399 1053.61824 0.10856 5.73E-05 -0.66536 -0.00035119 -0.5568 -0.00029389 527.8163689923077 59.977 0.33905 59.486 59.313 59.652 -0.49079 35 16 3 0 0 0 0.014182 1 32610 32610 75.761 3.8386 1 31101000 49895 8296;16388 33754 34523 58052 58052 0.09358004885712035 QLSPVSDPPV 10 Unmodified _QLSPVSDPPV_ 0 0 0 REV__nc|ENSG00000163346|Q96AQ6-3|PBXIP1 REV__nc|ENSG00000163346|Q96AQ6-3|PBXIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7776489257812 2 519.776939 1037.53933 0.87472 0.00045466 -0.68838 -0.00035781 0.18634 9.6853E-05 519.7767425256216 54.081 0.22955 54.081 53.923 54.152 0 14 10 2 0 0 0 0.11824 1 30014 30014 43.772 13.136 1 3659900 + 49896 21749 33755 34524 58053 58053 0.022057328607616 QLSRELLPV 9 Unmodified _QLSRELLPV_ 0 0 0 ENST00000335730.6_1_18:44089558-44181581:-|nuORF;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1;nc|ENSG00000167210|Q8IVV2-3|LOXHD1 ENST00000335730.6_1_18:44089558-44181581:-|nuORF ENST00000335730.6_1_18:44089558-44181581:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8165283203125 2 527.816399 1053.61824 0.10856 5.73E-05 -0.66536 -0.00035119 -0.5568 -0.00029389 527.8163689923077 59.977 0.33905 59.486 59.313 59.652 -0.49079 35 16 3 0 0 0 0.29507 1 32723 32723 18.146 0 1 31101000 49897 7588 33756 34525 58054 58054 0.09358004885712035 QLSSEEENNS 10 Unmodified _QLSSEEENNS_ 0 0 0 ENST00000508798.5_1_4:99392964-99393330:-|nuORF ENST00000508798.5_1_4:99392964-99393330:-|nuORF ENST00000508798.5_1_4:99392964-99393330:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8017578125 2 568.738739 1135.46293 0.76657 0.00043598 -1.7732 -0.0010085 -1.0067 -0.00057253 568.7380716211763 36.685 0.20854 36.685 36.588 36.796 0 16 9 2 0 0 0 0.23693 1 19488 19488 6.2058 0 1 1017100 49898 14568 33757 34526 58055 58055 -0.09938735497166817 QLSYSPLWAL 10 Unmodified _QLSYSPLWAL_ 0 0 0 REV__ENSG00000181045|ENST00000361193|SLC26A11 REV__ENSG00000181045|ENST00000361193|SLC26A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3138427734375 2 589.316232 1176.61791 NaN NaN NaN NaN NaN NaN NaN 48.78 1 48.408 47.908 48.908 -0.37172 0 0 0 0.71157 1 26191 26191 16.149 0.30192 1 + 49899 23186 33758 34527 58056 58056 0.03666585165842662 QLTDLNVQL 9 Unmodified _QLTDLNVQL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7400512695312 2 522.290214 1042.56587 0.53179 0.00027775 -0.57923 -0.00030253 -0.047438 -2.4776E-05 522.2898527718174 69.005 0.41142 69.005 68.74 69.152 0 41 17 3 0 0 0 0.10661 1 38471 38471 24.021 12.38 1 6243800 49900 5632 33759 34528 58057 58057 0.04629421752088092 QLTDLNVQL 9 Unmodified _QLTDLNVQL_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2902221679688 2 522.290214 1042.56587 -0.15286 -7.9835E-05 -0.34533 -0.00018036 -0.49818 -0.0002602 522.2904334354286 69.476 0.37189 68.997 68.851 69.223 -0.47903 33 15 3 0 0 0 0.013323 1 37978 37978 71.134 25.113 1 2088900 49901 5632 33759 34528 58058 58058 0.04629421752088092 QLTEKVMQL 9 Unmodified _QLTEKVMQL_ 0 0 0 REV__nc|ENSG00000162946|Q9NRI5-2|DISC1 REV__nc|ENSG00000162946|Q9NRI5-2|DISC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.302490234375 2 545.302267 1088.58998 0.30878 0.00016838 -0.87911 -0.00047938 -0.57033 -0.000311 545.3017860941189 48.173 0.17818 47.82 47.672 47.85 -0.3526 12 8 2 0 0 0 0.19127 1 25861 25861 24.021 2.4836 1 2896200 + 49902 21709 33760 34529 58059 58059 0.049229389141146385 QLTLILVD 8 Unmodified _QLTLILVD_ 0 0 0 ENSG00000143363|ENST00000271620|PRUNE1;ENST00000462440.5_1_1:150981012-150999718:+|nuORF;ENST00000475722.5_1_1:150981012-150999718:+|nuORF ENSG00000143363|ENST00000271620|PRUNE1 ENSG00000143363|ENST00000271620|PRUNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 914.5563354492188 1 914.55571 913.548434 0.1815 0.00016599 0.54259 0.00049622 0.72408 0.00066221 914.556175941202 84.116 0.35594 83.616 83.441 83.797 -0.49961 21 15 2 0 0 0 0.79887 1 46090 46090 7.2892 0 1 979180 49903 5497 33761 34530 58060 58060 0.08820126217096913 QLTNVILHL 9 Unmodified _QLTNVILHL_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8195190429688 2 525.818941 1049.62333 0.58627 0.00030827 -2.9412 -0.0015466 -2.355 -0.0012383 525.8189561472404 73.151 0.35321 72.676 72.473 72.826 -0.47588 34 15 4 0 0 0 0.052168 1 39993 39993 44.407 21.259 1 2921800 49904 1797 33762 34531 58061 58061 0.10050308748327552 QLTNVILHL 9 Unmodified _QLTNVILHL_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.2970581054688 2 525.818941 1049.62333 1.0725 0.00056395 -2.2181 -0.0011663 -1.1456 -0.00060239 525.81775121827 91.034 0.74336 84.858 84.444 85.188 -6.1757 77 43 2 0 0 0 0.18521 1 60160 60160 11.64 0 1 14563000 49905 1797 33762 34531 58062 58062 0.10050308748327552 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8185424804688 2 528.818607 1055.62266 0.5629 0.00029767 -0.76595 -0.00040505 -0.20306 -0.00010738 528.8181543617511 67.662 0.43709 67.662 67.459 67.896 0 74 20 5 0 0 0 0.0061223 2 37770 37672;37770 114.2 42.279 1 117440000 49906 4327 33763 34532 58063;58064 58064 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.818115234375 2 528.818607 1055.62266 0.52725 0.00027882 -0.88326 -0.00046708 -0.35601 -0.00018826 528.818102095648 68.13 0.39582 67.647 67.453 67.848 -0.48218 58 18 4 0 0 0 0.0048194 2 37179 37179;37283 117.76 44.793 1 40482000 49907 4327 33763 34532 58065;58066 58065 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8182373046875 2 528.818607 1055.62266 0.26088 0.00013796 -0.36457 -0.00019279 -0.10368 -5.483E-05 528.8182865921196 67.655 0.27319 67.673 67.514 67.787 0.018028 29 13 3 0 0 0 0.01958 1 37142 37142 63.961 24.011 1 5883700 49908 4327 33763 34532 58067 58067 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8195190429688 2 528.818607 1055.62266 0.5763 0.00030476 0.029329 1.551E-05 0.60563 0.00032027 528.818287761741 76.456 0.57758 70.28 70.004 70.581 -6.1757 44 31 2 0 0 0 0.037253 1 49939 49939 51.415 11.466 1 16672000 49909 4327 33763 34532 58068 58068 0.09707469308591499 QLVDIIEKV 9 Unmodified _QLVDIIEKV_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8186645507812 2 528.818607 1055.62266 1.0581 0.00055954 -0.5643 -0.00029841 0.4938 0.00026113 528.8180634687204 79.358 1.6698 73.182 72.255 73.924 -6.1757 236 99 3 0 0 0 0.0025703 5 51834 51571;51704;51834;51959;52094 128.93 43.139 1 33954000 49910 4327 33763 34532 58069;58070;58071;58072;58073 58071 0.09707469308591499 QLVDLKLTV 9 Unmodified _QLVDLKLTV_ 0 0 0 nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.822509765625 2 514.82115 1027.62775 -0.081146 -4.1776E-05 0.7306 0.00037613 0.64945 0.00033435 514.8215225392413 69.438 0.31921 68.959 68.79 69.109 -0.47903 32 13 3 0 0 0 0.032796 2 37912 37912;38015 53.833 15.859 1 6627200 49911 1398 33764 34533 58074;58075 58074 0.11503773171193643 QLVDLKLTV 9 Unmodified _QLVDLKLTV_ 0 0 0 nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.822265625 2 514.82115 1027.62775 0.78642 0.00040487 0.029096 1.4979E-05 0.81552 0.00041985 514.8206397509914 68.898 0.27378 68.923 68.793 69.067 0.025146 33 12 3 0 0 0 0.044011 1 37835 37835 47.749 18.667 1 5276400 49912 1398 33764 34533 58076 58076 0.11503773171193643 QLVDLKLTV 9 Unmodified _QLVDLKLTV_ 0 0 0 nc|ENSG00000084764|Q9UPY8-2|MAPRE3;ENSG00000084764|ENST00000233121|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 nc|ENSG00000084764|Q9UPY8-2|MAPRE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.8222045898438 2 514.82115 1027.62775 1.0485 0.00053978 0.33273 0.0001713 1.3812 0.00071107 514.8212578570248 79.475 1.619 73.299 72.37 73.989 -6.1757 161 96 2 0 0 0 0.0094097 4 52025 51895;52025;52159;52291 82.529 19.762 1 14663000 49913 1398 33764 34533 58077;58078;58079;58080 58078 0.11503773171193643 QLVDTTVEL 9 Unmodified _QLVDTTVEL_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2766418457031 2 509.276772 1016.53899 0.30452 0.00015509 -0.22331 -0.00011373 0.081209 4.1358E-05 509.2765801417082 62.594 0.3679 62.594 62.432 62.8 0 40 17 3 0 0 0 0.008678 1 34903 34903 88.904 46.809 1 6830900 49914 3132 33765 34534 58081 58081 0.031383131409029374 QLVNREDRSK 10 Unmodified _QLVNREDRSK_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2434387207031 3 415.561709 1243.6633 -0.15481 -6.4333E-05 3.9763 0.0016524 3.8214 0.001588 415.8980952866338 37.822 0.19079 37.84 37.731 37.922 0.01704 17 8 3 0 0 0 0.23634 1 20125 20125 3.5871 0.5148 1 2717500 49915 4529 33766 34535 58082 58082 0.05121203680914732 QLVNVLEAI 9 Unmodified _QLVNVLEAI_ 0 0 0 REV__ENSG00000272047|ENST00000607778|GTF2H5 REV__ENSG00000272047|ENST00000607778|GTF2H5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7980041503906 2 499.797675 997.580796 NaN NaN NaN NaN NaN NaN NaN 92.999 1 92.541 92.041 93.041 -0.4574 0 0 0 0.82396 1 50827 50827 4.756 0 1 + 49916 24630 33767 34536 58083 58083 0.08190913620080664 QLVRDLLEV 9 Unmodified _QLVRDLLEV_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.821533203125 2 542.821681 1083.62881 -0.09692 -5.261E-05 -2.0099 -0.001091 -2.1068 -0.0011436 542.820728758575 66.172 0.1414 65.689 65.651 65.792 -0.48323 11 8 2 0 0 0 0.012668 1 36135 36135 72.968 31.128 1 3309900 49917 2642 33768 34537 58084 58084 0.09033987540146882 QLVRDLLEV 9 Unmodified _QLVRDLLEV_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1;nc|ENSG00000109320|P19838-3|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.821681 1083.62881 0.22665 0.00012303 -1.9081 -0.0010358 -1.6814 -0.00091272 542.8208052701435 65.827 0.24657 65.827 65.671 65.918 0 0.069056 1.2752E-05 NaN 72.968 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1512700 49918 2642 33768 34537 0.09033987540146882 QLVSMSPDF 9 Unmodified _QLVSMSPDF_ 0 0 0 REV__ENSG00000152402|ENST00000526355|GUCY1A2 REV__ENSG00000152402|ENST00000526355|GUCY1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2435913085938 2 512.244418 1022.47428 0.8038 0.00041174 -0.44881 -0.0002299 0.35499 0.00018184 512.2446774583061 80.118 0.26029 79.628 79.428 79.689 -0.48932 11 9 2 0 0 0 0.56345 1 43903 43903 3.5965 0 1 409480 + 49919 21114 33769 34538 58085 58085 -0.03605584936735795 QLVTQPLLQQ 10 Unmodified _QLVTQPLLQQ_ 0 0 0 REV__ENSG00000170485|ENST00000335681|NPAS2 REV__ENSG00000170485|ENST00000335681|NPAS2 MSMS AL20221201_MKP_PDAC_01 4 584.7486572265625 2 584.340238 1166.66592 NaN NaN NaN NaN NaN NaN NaN 88.258 1 82.082 81.582 82.582 -6.1757 0 0 0 0.69089 1 58219 58219 19.362 0 1 + 49920 22488 33770 34539 58086 58086 0.08925659085889492 QLVTSPSP 8 Unmodified _QLVTSPSP_ 0 0 0 nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.4474487304688 1 828.44616 827.438883 0.17149 0.00014207 -0.25066 -0.00020766 -0.079172 -6.559E-05 828.4459195094286 72.77 0.31969 72.77 72.585 72.905 0 23 15 2 0 0 0 0.48669 1 40474 40474 36.044 5.8194 1 1956300 49921 8999 33771 34540 58087 58087 0.018261205977523787 QLVVELEAF 9 Unmodified _QLVVELEAF_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7598876953125 2 524.289682 1046.56481 -0.87582 -0.00045919 4.2195 0.0022122 3.3436 0.001753 524.292228123037 56.133 0.37223 55.647 55.531 55.903 -0.48554 29 18 2 0 0 0 0.32871 1 30606 30606 15.847 0 1 4690700 + 49922 17402 33772 34541 58088 58088 0.043392073831682865 QLVVELKDI 9 Unmodified _QLVVELKDI_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;ENST00000472829.1_1_3:121448028-121448843:-|nuORF nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS AL20221201_MKP_PDAC_01 4 528.8184814453125 2 528.818607 1055.62266 NaN NaN NaN NaN NaN NaN NaN 77.467 1 71.291 70.791 71.791 -6.1757 0 0 0 0.25233 1 50672 50672 27.629 1.3607 1 49923 8304 33773 34542 58089 58089 0.09707469308591499 QLWRERRRQKR 11 Unmodified _QLWRERRRQKR_ 0 0 0 REV__ENSG00000164197|ENST00000389100|RNF180 REV__ENSG00000164197|ENST00000389100|RNF180 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.4739990234375 2 806.47438 1610.93421 NaN NaN NaN NaN NaN NaN NaN 102.26 1 102.21 101.71 102.71 -0.045853 0 0 0 0.9435 1 56803 56803 0 0 1 + 49924 21891 33774 34543 58090 58090 0.1531781617670731 QLWVPLRW 8 Unmodified _QLWVPLRW_ 0 0 0 ENST00000573441.1_1_17:79096339-79098810:-|nuORF;nc|ENSG00000181409|Q6ZMQ8-3|AATK;ENSG00000181409|ENST00000326724|AATK ENST00000573441.1_1_17:79096339-79098810:-|nuORF ENST00000573441.1_1_17:79096339-79098810:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3130493164062 2 549.316369 1096.61818 0.92041 0.0005056 -2.6797 -0.001472 -1.7592 -0.00096638 550.3205574263677 80.176 0.27347 79.687 79.56 79.833 -0.48932 20 10 3 0 0 0 0.80975 1 43981 43981 0.79363 0 1 511260 49925 8972 33775 34544 58091 58091 0.07374049676332106 QLWWWRRRPQI 11 Unmodified _QLWWWRRRPQI_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.6651611328125 2 812.952218 1623.88988 NaN NaN NaN NaN NaN NaN NaN 100.36 1 100.33 99.826 100.83 -0.036301 0 0 0 0.94307 1 55751 55751 0.30703 0 1 + 49926 29159 33776 34545 58092 58092 0.1028941203053364 QLWYFWRRHVF 11 Unmodified _QLWYFWRRHVF_ 0 0 0 ENST00000441875.1_1_17:16330801-16331912:+|nuORF;ENSG00000187688|ENST00000338560|TRPV2 ENST00000441875.1_1_17:16330801-16331912:+|nuORF ENST00000441875.1_1_17:16330801-16331912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 819.4251098632812 2 819.428045 1636.84154 NaN NaN NaN NaN NaN NaN NaN 42.961 1 42.961 42.461 43.461 0 0 0 0 0.94165 1 23299 23299 1.3295 1.0225 1 49927 9580 33777 34546 58093 58093 0.04858918390618783 QLYDQAVLKMY 11 Unmodified _QLYDQAVLKMY_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.35107421875 2 686.352488 1370.69042 -0.016889 -1.1592E-05 -0.46382 -0.00031834 -0.48071 -0.00032994 686.3523924710175 96.083 0.25011 96.083 95.913 96.163 0 35 18 2 0 0 0 0.71618 2 53042 53040;53042 2.7352 0.23671 1 1370000 + 49928 18400 33778 34547 58094;58095 58095 0.019905511770957673 QLYDQAVLKMY 11 Unmodified _QLYDQAVLKMY_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3517456054688 2 686.352488 1370.69042 NaN NaN NaN NaN NaN NaN NaN 90.381 1 90.381 89.881 90.881 0 0 0 0 0.93969 1 50003 50003 2.7352 1.2533 1 + 49929 18400 33778 34547 58096 58096 0.019905511770957673 QLYDQAVLKMY 11 Unmodified _QLYDQAVLKMY_ 0 0 0 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 REV__nc|ENSG00000105122|Q86YV0-2|RASAL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3516235351562 2 686.352488 1370.69042 -0.016889 -1.1592E-05 -0.46382 -0.00031834 -0.48071 -0.00032994 686.3523924710175 96.083 0.25011 96.083 95.913 96.163 0 35 18 2 0 0 0 0.30577 1 53144 53144 1.1933 0.12188 1 1370000 + 49930 18400 33778 34547 58097 58097 0.019905511770957673 QLYEEEIREL 10 Unmodified _QLYEEEIREL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000396270.3_1_12:69099864-69100302:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.3370361328125 2 661.33535 1320.65615 0.62127 0.00041087 0.28228 0.00018668 0.90355 0.00059755 661.335882597992 54.318 0.17658 54.318 54.222 54.398 0 16 7 3 0 0 0 0.14294 1 30159 30159 40.725 22.352 1 1637500 + 49931 165 33779 34548 58098 58098 0.008644262898314992 QLYEFDIKV 9 Unmodified _QLYEFDIKV_ 0 0 0 nc|ENSG00000135677|P15586-2|GNS;ENSG00000135677|ENST00000258145|GNS nc|ENSG00000135677|P15586-2|GNS nc|ENSG00000135677|P15586-2|GNS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8087768554688 2 577.808239 1153.60193 NaN NaN NaN NaN NaN NaN NaN 70.422 1 69.943 69.443 70.443 -0.47903 0 0 0 0.82739 1 38515 38515 4.3292 0 1 49932 4730 33780 34549 58099 58099 0.03126878928947008 QLYEKGLYY 9 Unmodified _QLYEKGLYY_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.8011474609375 2 588.800414 1175.58628 0.32796 0.0001931 1.153 0.00067888 1.481 0.00087199 588.8014974848727 63.232 0.19881 62.746 62.642 62.841 -0.48617 11 8 2 0 0 0 0.49272 1 34511 34511 7.9102 0 1 916180 49933 6540 33781 34550 58100 58100 0.005505924119006522 QLYGVFPE 8 Unmodified _QLYGVFPE_ 0 0 0 ENSG00000100288|ENST00000406938|CHKB;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENST00000465842.1_1_22:51020081-51020803:-|nuORF;ENST00000492556.5_1_22:51018168-51020414:-|nuORF ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2669372558594 2 476.742368 951.470183 -0.45416 -0.00021652 -0.70111 -0.00033425 -1.1553 -0.00055076 476.7420584576093 48.722 0.32117 48.722 48.531 48.852 0 32 14 3 0 0 0 8.7369 1 26633 26633 2.3027 0 1 7561100 49934 1784 33782 34551 58101 58101 -0.007493063681408785 QLYLADHL 8 Unmodified _QLYLADHL_ 0 0 0 REV__nc|ENSG00000037280|P35916-3|FLT4 REV__nc|ENSG00000037280|P35916-3|FLT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7617797851562 2 486.761092 971.507631 0.34912 0.00016994 0.021864 1.0642E-05 0.37098 0.00018058 486.76108276417534 66.643 0.34982 66.16 65.964 66.314 -0.48323 27 16 2 0 0 0 0.6895 1 36372 36372 18.135 4.6271 1 1220700 + 49935 17172 33783 34552 58102 58102 0.02073784897470432 QLYNQIIKL 9 Unmodified _QLYNQIIKL_ 0 0 0 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 ENSG00000174780|ENST00000642900|SRP72 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.309326171875 2 566.839874 1131.66519 1.1214 0.00063568 -1.1078 -0.00062795 0.013645 7.7344E-06 567.3400557010453 65.94 0.21948 65.95 65.813 66.033 0.0095673 17 10 2 0 0 0 0.15672 1 36148 36148 26.884 2.8631 1 1984000 49936 8455 33784 34553 58103 58103 0.10462864436840391 QLYQLLFHEF 10 Unmodified _QLYQLLFHEF_ 0 0 0 REV__nc|ENSG00000100416|O75648-2|TRMU REV__nc|ENSG00000100416|O75648-2|TRMU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 669.8490600585938 2 669.348063 1336.68157 -0.14378 -9.6241E-05 0.54259 0.00036318 0.39881 0.00026694 669.8499309778726 55.05 0.24947 55.05 54.944 55.193 0 18 10 3 0 0 0 0.67459 1 30595 30595 5.7319 0 1 800510 + 49937 18064 33785 34554 58104 58104 0.026699456029746216 QLYSVDVTL 9 Unmodified _QLYSVDVTL_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27;nc|ENSG00000204713|P14373-2|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2783813476562 2 519.279315 1036.54408 1.0984 0.00057039 -0.090728 -4.7113E-05 1.0077 0.00052328 519.279401978382 79.964 0.45458 73.788 73.599 74.054 -6.1757 67 27 3 0 0 0 0.009483 2 52388 52388;52511 81.89 47.788 1 49111000 49938 10323 33786 34555 58105;58106 58105 0.027266170035318282 QMAPTFGLGH 10 Unmodified _QMAPTFGLGH_ 0 0 0 REV__ENSG00000033050|ENST00000287844|ABCF2 REV__ENSG00000033050|ENST00000287844|ABCF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7636108398438 2 529.758027 1057.5015 NaN NaN NaN NaN NaN NaN NaN 93.616 1 93.159 92.659 93.659 -0.4574 0 0 0 1.0061 1 51155 51155 0 0 1 + 49939 17152 33787 34556 58107 58107 -0.02495056605675927 QMARAAPG 8 Unmodified _QMARAAPG_ 0 0 0 REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF REV__ENST00000563396.1_1_16:68395424-68397457:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2043151855469 2 401.20543 800.396307 0.30332 0.0001217 -3.2977 -0.0013231 -2.9944 -0.0012014 401.20390353037163 43.231 0.14494 43.216 43.144 43.289 -0.015667 9 6 2 0 0 0 0.80676 1 23187 23187 2.5775 0 1 3167700 + 49940 28875 33788 34557 58108 58108 -0.011875530114593857 QMCGLHIVV 9 Carbamidomethyl (C) _QMC(Carbamidomethyl (C))GLHIVV_ QMC(1)GLHIVV QMC(47)GLHIVV 0 1 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7721557617188 2 528.77008 1055.52561 1.1981 0.00063353 2.366 0.001251 3.5641 0.0018846 528.7710478876501 64.678 0.5662 58.502 58.132 58.699 -6.1757 57 31 2 0 0 0 0.045537 2 41871 41871;42001 46.921 23.772 1 40143000 49941 5318;130 33789 34558 58109;58110 58109 1 6.460556301135512E-05 QMEEDILQL 9 Unmodified _QMEEDILQL_ 0 0 0 ENSG00000130173|ENST00000252453|ANGPTL8 ENSG00000130173|ENST00000252453|ANGPTL8 ENSG00000130173|ENST00000252453|ANGPTL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.772705078125 2 559.773539 1117.53253 -0.068911 -3.8575E-05 -0.73369 -0.0004107 -0.80261 -0.00044928 559.7730323127138 34.251 0.28722 34.059 33.865 34.152 -0.19131 15 10 2 0 0 0 0.28023 1 17892 17892 18.146 0.011366 1 1882900 49942 4185 33790 34559 58111 58111 -0.02153948082104762 QMEKLTFH 8 Unmodified _QMEKLTFH_ 0 0 0 REV__ENSG00000140993|ENST00000396862|TIGD7 REV__ENSG00000140993|ENST00000396862|TIGD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2626342773438 2 517.260402 1032.50625 1.0531 0.00054473 2.6843 0.0013885 3.7374 0.0019332 517.2620330099702 102.4 0.14766 96.228 96.132 96.28 -6.1757 29 12 3 0 0 0 0.80232 1 68697 68697 5.2307 0.47466 1 6394500 + 49943 20510 33791 34560 58112 58112 -0.008701724629418095 QMEWTGLR 8 Oxidation (M) _QM(Oxidation (M))EWTGLR_ QM(1)EWTGLR QM(46)EWTGLR 0 0 1 REV__ENST00000590444.5_1_19:6475993-6476077:-|nuORF REV__ENST00000590444.5_1_19:6475993-6476077:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.747314453125 2 518.747659 1035.48076 0.4936 0.00025605 -0.22763 -0.00011808 0.26597 0.00013797 518.747833635094 38.243 0.44553 38.243 38.069 38.515 0 80 33 3 0 0 0 0.38465 1 20359 20359 46.021 6.0636 1 36582000 + 49944 29149 33792 34561 58113 58113 1866 -0.03555646985341809 QMFEGQILDV 10 Oxidation (M) _QM(Oxidation (M))FEGQILDV_ QM(1)FEGQILDV QM(60)FEGQILDV 0 0 1 ENSG00000176092|ENST00000308182|CRYBG2;ENST00000374211.5_1_1:26648461-26651325:-|nuORF ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2867431640625 2 598.286814 1194.55907 0.20147 0.00012054 0.6994 0.00041844 0.90087 0.00053898 598.286949711993 67.087 0.2299 67.087 66.971 67.201 0 17 9 2 0 0 0 0.046375 1 37412 37412 60.074 40.712 1 1481200 49945 8564 33793 34562 58114 58114 1454 -0.03042259190783625 QMIEQIQFV 9 Oxidation (M) _QM(Oxidation (M))IEQIQFV_ QM(1)IEQIQFV QM(61)IEQIQFV 0 0 1 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G nc|ENSG00000164749|Q14541|HNF4G nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.292236328125 2 576.291899 1150.56925 0.27054 0.00015591 0.55575 0.00032027 0.82628 0.00047618 576.2920177926356 65.413 0.27644 65.413 65.32 65.597 0 16 10 2 0 0 0 0.022193 1 36489 36489 61.357 29.052 1 1130500 49946 7240 33794 34563 58115 58115 1252 -1.651465572649613E-05 QMIFHTFHLE 10 Unmodified _QMIFHTFHLE_ 0 0 0 nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523488.5_1_8:3008913-3253839:-|nuORF nc|ENSG00000183117|Q96PZ7-4|CSMD1 nc|ENSG00000183117|Q96PZ7-4|CSMD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 74.073 1 74.073 73.573 74.573 0 0 0 0 0.99091 1 41226 41226 0.69767 0 1 49947 9120 33795 34564 58116 58116 -0.016068539630396117 QMLETHLLRG 10 Unmodified _QMLETHLLRG_ 0 0 0 REV__ENST00000604751.1_1_9:115618996-115637523:+|nuORF REV__ENST00000604751.1_1_9:115618996-115637523:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8863220214844 3 399.885135 1196.63358 1.1824 0.00047283 0.71182 0.00028464 1.8942 0.00075748 399.885215660793 89.902 0.30305 83.727 83.58 83.883 -6.1757 37 16 3 0 0 0 0.49559 1 59327 59327 16.566 0.82726 1 13159000 + 49948 29288 33796 34565 58117 58117 0.04312548411235184 QMLKVRGL 8 Unmodified _QMLKVRGL_ 0 0 0 REV__nc|ENSG00000110002|O00534-3|VWA5A REV__nc|ENSG00000110002|O00534-3|VWA5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7864990234375 2 472.78913 943.563706 NaN NaN NaN NaN NaN NaN NaN 21.536 1 21.55 21.05 22.05 0.013796 0 0 0 0.97444 1 11035 11035 5.2307 0 1 + 49949 18684 33797 34566 58118 58118 0.08966714533289633 QMLRMWHNL 9 Unmodified _QMLRMWHNL_ 0 0 0 ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.2062683105469 3 410.207444 1227.6005 -0.60271 -0.00024724 -1.0239 -0.00042002 -1.6266 -0.00066725 410.20693339148517 26.516 0.35519 26.516 26.303 26.658 0 26 16 2 0 0 0 0.55144 1 13604 13604 2.4985 1.0434 1 1518000 49950 11558 33798 34567 58119 58119 -0.004193569124481655 QMLRMWHNL 9 Unmodified _QMLRMWHNL_ 0 0 0 ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF ENST00000300870.14_1_16:31927813-31927912:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 410.207444 1227.6005 -0.60271 -0.00024724 -1.0239 -0.00042002 -1.6266 -0.00066725 410.20693339148517 26.516 0.35519 26.516 26.303 26.658 0 0 0 NaN 2.4985 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1518000 49951 11558 33798 34567 -0.004193569124481655 QMLYVYYKFWY 11 Unmodified _QMLYVYYKFWY_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 802.3880615234375 2 802.386331 1602.75811 NaN NaN NaN NaN NaN NaN NaN 89.648 1 89.691 89.191 90.191 0.042175 0 0 0 0.94307 1 49870 49870 0.30703 0.03801 1 + 49952 28076 33799 34568 58120 58120 -0.019159988921046534 QMMQDHSVF 9 Unmodified _QMMQDHSVF_ 0 0 0 REV__nc|ENSG00000147044|O14936-3|CASK REV__nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7396850585938 2 561.738976 1121.4634 1.3082 0.00073489 -0.82241 -0.00046198 0.48582 0.0002729 561.7393015477652 50.408 0.27532 44.869 44.695 44.971 -5.5391 23 17 2 0 0 0 0.20507 1 31599 31599 24.021 5.8742 1 13199000 + 49953 20860 33800 34569 58121 58121 -0.09247310582668433 QMPLRVPRYPD 11 Unmodified _QMPLRVPRYPD_ 0 0 0 REV__nc|ENSG00000184634|Q93074-3|MED12 REV__nc|ENSG00000184634|Q93074-3|MED12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3642578125 2 686.363721 1370.71289 NaN NaN NaN NaN NaN NaN NaN 101.85 1 101.85 101.35 102.35 0 0 0 0 0.94337 1 56180 56180 0 0 1 + 49954 23432 33801 34570 58122 58122 0.042361953653880846 QMPTVHYEF 9 Unmodified _QMPTVHYEF_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2631225585938 2 576.263142 1150.51173 0.90849 0.00052353 -2.4735 -0.0014254 -1.565 -0.00090183 576.2620577170164 59.607 0.3178 53.492 53.286 53.604 -6.1147 38 16 3 0 0 0 0.16226 1 38217 38217 26.884 7.6267 1 52228000 49955 4829 33802 34571 58123 58123 -0.057504936711211485 QMQLLKKI 8 Unmodified _QMQLLKKI_ 0 0 0 REV__nc|ENSG00000103723|Q13367-3|AP3B2;REV__nc|ENSG00000132842|O00203-3|AP3B1 REV__nc|ENSG00000103723|Q13367-3|AP3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3143005371094 2 501.312438 1000.61032 3.696 0.0018528 0.86032 0.00043129 4.5563 0.0022841 501.31282745756545 98.295 0.34293 98.274 98.096 98.439 -0.021278 22 12 2 0 0 0 0.80992 1 54607 54607 0.69038 0 1 1137400 + 49956 18322;19885 33803 34572 58124 58124 0.11004154364604801 QMQSLDLGLL 10 Unmodified _QMQSLDLGLL_ 0 0 0 nc|ENSG00000152782|Q8TE04-4|PANK1 nc|ENSG00000152782|Q8TE04-4|PANK1 nc|ENSG00000152782|Q8TE04-4|PANK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7711181640625 2 559.299724 1116.5849 1.2734 0.00071219 0.67624 0.00037822 1.9496 0.0010904 559.3001404025422 82.77 0.33046 82.832 82.664 82.994 0.062004 30 12 3 0 0 0 0.21193 1 45790 45790 27.629 3.6082 1 7657300 49957 16278 33804 34573 58125 58125 0.03126635051512494 QMQVLLDQA 9 Unmodified _QMQVLLDQA_ 0 0 0 nc|ENSG00000025708|P19971-2|TYMP;ENSG00000025708|ENST00000252029|TYMP;ENST00000476284.1_1_22:50964673-50968379:-|nuORF nc|ENSG00000025708|P19971-2|TYMP nc|ENSG00000025708|P19971-2|TYMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2716674804688 2 523.270967 1044.52738 1.0037 0.0005252 1.0496 0.00054922 2.0533 0.0010744 523.2713878160386 42.051 0.43491 37.366 37.109 37.544 -4.6846 67 27 3 0 0 0 0.28023 2 25354 25220;25354 18.146 1.6654 1 37898000 49958 556 33805 34574 58126;58127 58127 0.006897928459238756 QMSNITVTY 9 Unmodified _QMSNITVTY_ 0 0 0 nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.755859375 2 528.755149 1055.49575 0.76267 0.00040327 0.50128 0.00026506 1.264 0.00066832 528.7551410465803 56.51 0.45124 50.533 50.304 50.755 -5.9769 51 25 3 0 0 0 0.0085366 2 36142 36001;36142 103.35 21.463 1 55047000 49959 1741 33806 34575 58128;58129 58129 -0.029781999080114474 QMVEQESQIF 10 Unmodified _QMVEQESQIF_ 0 0 0 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5283813476562 3 413.528906 1237.56489 0.16946 7.0076E-05 -0.37009 -0.00015304 -0.20063 -8.2968E-05 413.52893486889906 59.292 0.22511 59.238 59.155 59.38 -0.053062 16 11 2 0 0 0 0.54684 1 32322 32322 12.175 0 1 5085300 49960 8200 33807 34576 58130 58130 -0.04439160679135057 QMVEQESQIF 10 Unmodified _QMVEQESQIF_ 0 0 0 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 413.528906 1237.56489 0.33054 0.00013669 0.067307 2.7834E-05 0.39785 0.00016452 413.5292032211365 59.704 0.10228 59.213 59.132 59.234 -0.49079 -0.012554 0.00025256 NaN 12.175 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1032500 49961 8200 33807 34576 -0.04439160679135057 QMVEQESQIF 10 Unmodified _QMVEQESQIF_ 0 0 0 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 ENSG00000172318|ENST00000392690|B3GALT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.528906 1237.56489 0.16946 7.0076E-05 -0.37009 -0.00015304 -0.20063 -8.2968E-05 413.52893486889906 59.292 0.22511 59.238 59.155 59.38 -0.053062 0.012554 -0.00029007 NaN 12.175 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5085300 49962 8200 33807 34576 -0.04439160679135057 QMVEYIKN 8 Unmodified _QMVEYIKN_ 0 0 0 REV__ENST00000474240.1_1_6:127637576-127637633:-|nuORF REV__ENST00000474240.1_1_6:127637576-127637633:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7606201171875 2 512.760235 1023.50592 0.62772 0.00032187 3.019 0.001548 3.6468 0.0018699 512.7606076353575 101.6 0.17183 95.428 95.373 95.545 -6.1757 15 8 2 0 0 0 0.72664 1 68205 68205 14.838 0.25658 1 9671200 + 49963 27560 33808 34577 58131 58131 -0.004895921827937855 QMYYDRTLKSI 11 Unmodified _QMYYDRTLKSI_ 0 0 0 REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2445068359375 3 473.242988 1416.70714 0.34209 0.00016189 2.9079 0.0013762 3.25 0.001538 473.2442922356748 31.33 0.19995 31.227 31.109 31.309 -0.10269 17 7 3 0 0 0 0.59689 1 16287 16287 6.2344 0 1 4467800 + 49964 26886 33809 34578 58132 58132 0.015450520630565734 QMYYDRTLKSI 11 Unmodified _QMYYDRTLKSI_ 0 0 0 REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 473.242988 1416.70714 0.34209 0.00016189 2.9079 0.0013762 3.25 0.001538 473.2442922356748 31.33 0.19995 31.227 31.109 31.309 -0.10269 0.037039 -0.00067948 NaN 6.2344 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 4467800 + 49965 26886 33809 34578 0.015450520630565734 QMYYDRTLKSI 11 Unmodified _QMYYDRTLKSI_ 0 0 0 REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF REV__ENST00000425081.2_1_17:1421064-1421190:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 473.242988 1416.70714 -0.24746 -0.00011711 3.8857 0.0018389 3.6382 0.0017218 473.2446305569762 31.123 0.16453 31.153 31.059 31.223 0.030104 -0.037039 0.00070869 NaN 6.2344 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2987800 + 49966 26886 33809 34578 0.015450520630565734 QNAAQVHF 8 Unmodified _QNAAQVHF_ 0 0 0 nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10;nc|ENSG00000170325|Q9NQV6-6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 nc|ENSG00000170325|Q9NQV6|PRDM10 MSMS AL20221201_MKP_PDAC_01 4 457.7281188964844 2 457.727584 913.440614 NaN NaN NaN NaN NaN NaN NaN 21.52 1 18.785 18.285 19.285 -2.7348 0 0 0 0.95607 1 11534 11534 9.3474 3.587 1 49967 7972 33810 34579 58133 58133 -0.01956825593629219 QNAQLKSVY 9 Unmodified _QNAQLKSVY_ 0 0 0 REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198838|ENST00000634891|RYR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7849731445312 2 525.782556 1049.55056 0.97121 0.00051065 -0.16771 -8.8181E-05 0.8035 0.00042246 525.7844746310664 70.764 1.0498 70.8 70.312 71.361 0.035507 165 47 5 0 0 0 0.2143 1 39103 39103 21.747 4.6338 1 6905300 + 49968 24073 33811 34580 58134 58134 0.027765549549030766 QNAQLKSVY 9 Unmodified _QNAQLKSVY_ 0 0 0 REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198838|ENST00000634891|RYR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3060302734375 2 525.782556 1049.55056 0.97121 0.00051065 -0.16771 -8.8181E-05 0.8035 0.00042246 525.7844746310664 70.764 1.0498 70.8 70.312 71.361 0.035507 165 47 5 0 0 0 0.17275 1 39112 39112 21.747 4.8044 1 6905300 + 49969 24073 33811 34580 58135 58135 0.027765549549030766 QNCHSKCPM 9 Unmodified _QNCHSKCPM_ 0 0 0 ENST00000438017.5_1_3:42653847-42674179:-|nuORF ENST00000438017.5_1_3:42653847-42674179:-|nuORF ENST00000438017.5_1_3:42653847-42674179:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.21044921875 2 524.212072 1046.40959 NaN NaN NaN NaN NaN NaN NaN 19.69 1 17.033 16.533 17.533 -2.6564 0 0 0 0.83329 1 10451 10451 3.5965 0.31518 1 49970 13356 33812 34581 58136 58136 -0.11175806286041734 QNCNREYDL 9 Unmodified _QNCNREYDL_ 0 0 0 ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;nc|ENSG00000164989|Q6TFL3-3|CCDC171 ENSG00000164989|ENST00000380701|CCDC171 ENSG00000164989|ENST00000380701|CCDC171 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7897338867188 2 577.748387 1153.48222 0.13323 7.6973E-05 -2.7363 -0.0015809 -2.6031 -0.0015039 577.7470034280905 70.274 0.24551 70.274 70.203 70.449 0 14 9 3 0 0 0 0.21367 1 39232 39232 4.756 0 1 455850 49971 7277 33813 34582 58137 58137 -0.08838057687262335 QNDDNFLNIIY 11 Unmodified _QNDDNFLNIIY_ 0 0 0 nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF;ENSG00000151065|ENST00000280665|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B nc|ENSG00000151065|Q8IZD4-2|DCP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.8868408203125 3 456.885858 1367.63574 -0.36754 -0.00016793 1.3608 0.00062171 0.99322 0.00045379 456.8866117275389 33.721 0.21368 33.561 33.436 33.649 -0.15918 20 8 3 0 0 0 0.71036 1 17591 17591 1.3296 0.11481 1 2612500 49972 6087 33814 34583 58138 58138 -0.03336744369948974 QNDEEMDSAL 10 Unmodified _QNDEEMDSAL_ 0 0 0 REV__ENSG00000183318|ENST00000689094|SPDYE4 REV__ENSG00000183318|ENST00000689094|SPDYE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.4888610839844 3 384.488887 1150.44483 -0.40463 -0.00015558 -1.9616 -0.00075423 -2.3663 -0.0009098 384.4889871572474 44.708 0.2364 44.708 44.552 44.788 0 30 12 3 0 0 0 0.69064 1 24350 24350 1.9064 0 1 24145000 + 49973 23337 33815 34584 58139 58139 -0.12437193743539865 QNDGVCMAQF 10 Unmodified _QNDGVCMAQF_ 0 0 0 ENST00000465870.5_1_2:238536269-238629540:+|nuORF ENST00000465870.5_1_2:238536269-238629540:+|nuORF ENST00000465870.5_1_2:238536269-238629540:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.728759765625 2 556.728609 1111.44266 0.47458 0.00026421 -3.0413 -0.0016932 -2.5668 -0.001429 556.7283610938866 48.109 0.41956 48.109 47.852 48.272 0 72 20 5 0 0 0 0.67459 1 26324 26324 5.7319 0.97584 1 18546000 49974 13743 33816 34585 58140 58140 -0.10859900962350366 QNEKLEEIEWR 11 Unmodified _QNEKLEEIEWR_ 0 0 0 REV__ENSG00000153132|ENST00000325617|CLGN REV__ENSG00000153132|ENST00000325617|CLGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.9155578613281 3 491.915929 1472.72596 0.39367 0.00019365 -0.39254 -0.0001931 0.0011338 5.5775E-07 491.9156788430981 28.768 0.2361 28.798 28.681 28.917 0.029566 32 9 5 0 0 0 0.72131 1 14984 14984 2.2527 0.79761 1 30177000 + 49975 21153 33817 34586 58141 58141 0.008503049584533073 QNEMEGAPQEP 11 Unmodified _QNEMEGAPQEP_ 0 0 0 REV__ENSG00000114698|ENST00000354952|PLSCR4 REV__ENSG00000114698|ENST00000354952|PLSCR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5077819824219 3 410.508282 1228.50302 NaN NaN NaN NaN NaN NaN NaN 17.756 1 17.756 17.256 18.256 0 0 0 0 0.94313 1 8775 8775 0.073264 0 1 + 49976 18927 33818 34587 58142 58142 -0.10209512098253981 QNEMSLDY 8 Unmodified _QNEMSLDY_ 0 0 0 REV__ENSG00000165105|ENST00000376447|RASEF REV__ENSG00000165105|ENST00000376447|RASEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2083435058594 2 500.208032 998.401511 -0.29558 -0.00014785 0.75016 0.00037523 0.45457 0.00022738 500.20842615948516 31.93 0.3683 31.93 31.758 32.126 0 28 17 2 0 0 0 0.76266 1 16715 16715 11.64 1.5664 1 1876000 + 49977 21980 33819 34588 58143 58143 -0.09775338730162275 QNFSLMVVQ 9 Unmodified _QNFSLMVVQ_ 0 0 0 REV__ENST00000473182.2_1_2:173830035-173830095:+|nuORF REV__ENST00000473182.2_1_2:173830035-173830095:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2696533203125 2 533.273509 1064.53247 0.58976 0.0003145 -4.2154 -0.0022479 -3.6256 -0.0019334 533.2713730233238 49.273 0.24499 49.273 49.128 49.373 0 19 11 2 0 0 0 0.15471 1 27118 27118 27.629 1.3607 1 1719100 + 49978 27533 33820 34589 58144 58144 0.00278096708530029 QNFTSESK 8 Unmodified _QNFTSESK_ 0 0 0 nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2 nc|ENSG00000101096|Q13469-5|NFATC2 nc|ENSG00000101096|Q13469-5|NFATC2 MSMS AL20221201_MKP_PDAC_01 4 470.7229919433594 2 470.722164 939.429775 NaN NaN NaN NaN NaN NaN NaN 40 1 35.471 34.971 35.971 -4.5294 0 0 0 0.9192 1 23824 23824 16.942 0 1 49979 1912 33821 34590 58145 58145 -0.042362727585668836 QNFYENDF 8 Unmodified _QNFYENDF_ 0 0 0 REV__nc|ENSG00000054523|O60333-2|KIF1B REV__nc|ENSG00000054523|O60333-2|KIF1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.48291015625 3 359.482173 1075.42469 NaN NaN NaN NaN NaN NaN NaN 37.024 1 37.045 36.545 37.545 0.021545 0 0 0 0.97444 1 19639 19639 1.6526 0.45928 1 + 49980 17282 33822 34591 58146 58146 -0.11000576621199798 QNGKHFKF 8 Unmodified _QNGKHFKF_ 0 0 0 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2673950195312 2 503.266876 1004.5192 1.2247 0.00061633 -1.5425 -0.00077629 -0.31786 -0.00015997 503.26567249198064 20.94 0.20403 18.247 18.167 18.371 -2.693 15 10 2 0 0 0 0.57045 1 11221 11221 28.487 5.3384 1 1676100 49981 7023 33823 34592 58147 58147 0.017120267114592025 QNICRKRCL 9 Unmodified _QNICRKRCL_ 0 0 0 REV__ENSG00000250722|ENST00000514985|SELENOP REV__ENSG00000250722|ENST00000514985|SELENOP MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5382995605469 3 378.539194 1132.59575 0.64842 0.00024545 0.54445 0.00020609 1.1929 0.00045155 378.5393764656601 16.168 0.25663 13.611 13.472 13.729 -2.557 92 41 3 0 0 0 0.49272 1 8314 8314 8.1555 5.3122 1 7555300 + 49982 24501 33824 34593 58148 58148 0.034757589447963255 QNIKWCDK 8 Unmodified _QNIKWCDK_ 0 0 0 REV__ENST00000581274.1_1_18:20303550-20366766:-|nuORF REV__ENST00000581274.1_1_18:20303550-20366766:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7789306640625 2 517.758027 1033.5015 0.55349 0.00028658 -1.1944 -0.00061843 -0.64095 -0.00033185 518.2585340981002 74.419 0.20169 74.419 74.318 74.52 0 10 8 2 0 0 0 8.7369 1 41402 41402 9.3474 0 1 307380 + 49983 29064 33825 34594 58149 58149 -0.013910566057120377 QNKGLEVTY 9 Unmodified _QNKGLEVTY_ 0 0 0 REV__LCP1|p.A463T|1|0.2|ENSG00000136167|chr13:46142407-46142407|C/T|missense_variant REV__LCP1|p.A463T|1|0.2|ENSG00000136167|chr13:46142407-46142407|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2748413085938 2 526.274564 1050.53457 1.1389 0.00059936 1.9623 0.0010327 3.1012 0.0016321 526.2742831356899 50.429 0.38787 44.89 44.663 45.051 -5.5391 60 24 3 0 0 0 0.12424 1 31523 31523 30.637 1.555 1 32867000 + 49984 29449 33826 34595 58150 58150 0.011328487180207958 QNKNLLVV 8 Unmodified _QNKNLLVV_ 0 0 0 REV__ENSG00000133640|ENST00000393217|LRRIQ1 REV__ENSG00000133640|ENST00000393217|LRRIQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2835693359375 2 464.284734 926.554916 -0.56399 -0.00026185 -0.45421 -0.00021088 -1.0182 -0.00047274 464.2843113049151 35.782 0.21161 35.56 35.43 35.642 -0.2224 14 8 2 0 0 0 0.74163 1 18761 18761 13.508 1.8676 1 2408300 + 49985 19928 33827 34596 58151 58151 0.0887006416847953 QNKRARLPPAE 11 Unmodified _QNKRARLPPAE_ 0 0 0 ENSG00000283755|ENST00000640559|CPHXL ENSG00000283755|ENST00000640559|CPHXL ENSG00000283755|ENST00000640559|CPHXL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.24609375 3 427.245832 1278.71567 NaN NaN NaN NaN NaN NaN NaN 94.169 1 93.748 93.248 94.248 -0.42044 0 0 0 0.93984 1 51452 51452 2.6312 2.1767 1 49986 10956 33828 34597 58152 58152 0.08745786814552048 QNLATDPR 8 Unmodified _QNLATDPR_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MSMS AL20221201_MKP_PDAC_01 4 458.0733642578125 2 457.738148 913.461744 NaN NaN NaN NaN NaN NaN NaN 14.711 1 12.209 11.709 12.709 -2.5029 0 0 0 0.96881 1 7491 7491 6.7232 2.3939 1 49987 8977 33829 34598 58153 58153 0.0015513971524114822 QNLDSIIIY 9 Unmodified _QNLDSIIIY_ 0 0 0 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7932739257812 2 539.792589 1077.57063 0.43186 0.00023312 -0.81593 -0.00044043 -0.38407 -0.00020732 539.792976121962 67.159 0.27689 67.159 67.04 67.317 0 20 11 3 0 0 0 0.32871 1 37456 37456 15.847 0 1 854570 49988 6772 33830 34599 58154 58154 0.0349430589487838 QNLFHLILD 9 Unmodified _QNLFHLILD_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.4885559082031 3 371.541475 1111.60259 0.143 5.3131E-05 1.0055 0.00037357 1.1485 0.00042671 371.54162709979425 48.155 0.46207 48.155 47.81 48.272 0 42 22 2 0 0 0 0.21889 1 26323 26323 0.26902 0 1 5326300 + 49989 23951 33831 34600 58155 58155 0.051257183686630015 QNLFHLILD 9 Unmodified _QNLFHLILD_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.541475 1111.60259 0.41873 0.00015557 1.215 0.00045142 1.6337 0.00060699 371.5418328781629 48.376 0.36974 48.004 47.812 48.181 -0.37172 -0.075115 0.00011586 NaN 0.26902 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 3648800 + 49990 23951 33831 34600 0.051257183686630015 QNLFINKIY 9 Unmodified _QNLFINKIY_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8250122070312 2 576.824224 1151.63389 0.94757 0.00054658 0.14745 8.5054E-05 1.095 0.00063164 576.8242097479811 63.602 0.30938 63.592 63.453 63.762 -0.010532 33 14 3 0 0 0 0.23158 1 34807 34807 20.454 1.1966 1 5866400 + 49991 19800 33832 34601 58156 58156 0.06414291402757044 QNLFINKIY 9 Unmodified _QNLFINKIY_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 576.824224 1151.63389 0.67352 0.0003885 -0.51819 -0.00029891 0.15532 8.9593E-05 576.823929170203 64.029 0.23756 63.544 63.458 63.696 -0.48512 -0.023904 -0.00032552 NaN 20.454 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2224600 + 49992 19800 33832 34601 0.06414291402757044 QNLFINKIY 9 Unmodified _QNLFINKIY_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.824224 1151.63389 0.94757 0.00054658 0.14745 8.5054E-05 1.095 0.00063164 576.8242097479811 63.602 0.30938 63.592 63.453 63.762 -0.010532 0.023904 0.0004424 NaN 20.454 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5866400 + 49993 19800 33832 34601 0.06414291402757044 QNLGNYGGKHL 11 Unmodified _QNLGNYGGKHL_ 0 0 0 REV__ENSG00000197372|ENST00000359788|ZNF675 REV__ENSG00000197372|ENST00000359788|ZNF675 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8764343261719 3 400.875516 1199.60472 NaN NaN NaN NaN NaN NaN NaN 32.258 1 32.129 31.629 32.629 -0.12915 0 0 0 0.93893 1 16791 16791 1.3296 0.1363 1 + 49994 23920 33833 34602 58157 58157 0.01290147106465156 QNLLRPMQL 9 Unmodified _QNLLRPMQL_ 0 0 0 nc|ENSG00000156206|Q6P656-2|CFAP161;ENSG00000156206|ENST00000286732|CFAP161 nc|ENSG00000156206|Q6P656-2|CFAP161 nc|ENSG00000156206|Q6P656-2|CFAP161 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8136596679688 2 556.815876 1111.6172 NaN NaN NaN NaN NaN NaN NaN 93.481 1 93.481 92.981 93.981 0 0 0 0 0.84564 1 51682 51682 2.0598 0 1 49995 6437 33834 34603 58158 58158 0.06585467245145082 QNLQMLQTF 9 Unmodified _QNLQMLQTF_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7872314453125 2 561.784241 1121.55393 1.5166 0.000852 0.66338 0.00037268 2.18 0.0012247 561.7845590193275 96.66 0.87894 90.484 89.877 90.756 -6.1757 96 52 3 0 0 0 0.23158 1 64114 64114 20.454 1.1966 1 41577000 49996 2211 33835 34604 58159 58159 -0.001985182627549875 QNNEKNISCV 10 Unmodified _QNNEKNISCV_ 0 0 0 ENSG00000134389|ENST00000256785|CFHR5 ENSG00000134389|ENST00000256785|CFHR5 ENSG00000134389|ENST00000256785|CFHR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.773193359375 2 574.771862 1147.52917 0.42166 0.00024236 -0.051434 -2.9563E-05 0.37023 0.0002128 574.771723908268 48.635 1.8664 48.591 47.902 49.768 -0.04369 268 93 4 0 0 0 0.50362 1 25951 25951 16.149 1.3108 1 27608000 49997 4604 33836 34605 58160 58160 -0.03869198136112573 QNNLKELEL 9 Unmodified _QNNLKELEL_ 0 0 0 REV__nc|ENSG00000047410|P12270-2|TPR REV__nc|ENSG00000047410|P12270-2|TPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.8008422851562 2 550.800946 1099.58734 NaN NaN NaN NaN NaN NaN NaN 55.617 1 55.617 55.117 56.117 0 0 0 0 0.73776 1 30904 30904 4.3292 0 1 + 49998 17226 33837 34606 58161 58161 0.041528067808030755 QNNSEHVF 8 Unmodified _QNNSEHVF_ 0 0 0 ENST00000395611.7_3_10:49643604-49643799:+|nuORF ENST00000395611.7_3_10:49643604-49643799:+|nuORF ENST00000395611.7_3_10:49643604-49643799:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4326782226562 1 974.432635 973.425358 0.60369 0.00058825 -1.5869 -0.0015464 -0.98325 -0.00095811 974.4316505075562 42.986 0.40597 42.986 42.798 43.204 0 41 20 3 0 0 0 0.63229 2 23348 23238;23348 23.148 3.7094 1 6751200 49999 12774 33838 34607 58162;58163 58163 -0.062417371814717626 QNPFILLNSPT 11 Unmodified _QNPFILLNSPT_ 0 0 0 ENSG00000120832|ENST00000240050|MTERF2 ENSG00000120832|ENST00000240050|MTERF2 ENSG00000120832|ENST00000240050|MTERF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.337890625 2 622.337695 1242.66084 NaN NaN NaN NaN NaN NaN NaN 90.097 1 89.595 89.095 90.095 -0.50171 0 0 0 0.94184 1 49252 49252 1.1933 0 1 50000 3544 33839 34608 58164 58164 0.0492135522326862 QNQFGILTL 9 Unmodified _QNQFGILTL_ 0 0 0 CON__Q2UVX4 CON__Q2UVX4 CON__Q2UVX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2903442382812 2 517.287474 1032.5604 0.89047 0.00046063 3.6715 0.0018992 4.562 0.0023599 517.2898403576226 79.948 0.20582 79.459 79.354 79.56 -0.48932 13 7 3 0 0 0 0.5029 1 43818 43818 7.2892 1.0834 1 1052800 + 50001 196 33840 34609 58165 58165 0.04541742960304873 QNQLIARLR 9 Unmodified _QNQLIARLR_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2271118164062 3 371.228001 1110.66217 NaN NaN NaN NaN NaN NaN NaN 37.887 1 37.887 37.387 38.387 0 0 0 0 0.85359 1 20196 20196 1.0715 0.10919 1 + 50002 23115 33841 34610 58166 58166 0.1112703410267386 QNQMYQKF 8 Unmodified _QNQMYQKF_ 0 0 0 REV__nc|ENSG00000158290|Q13620-3|CUL4B REV__nc|ENSG00000158290|Q13620-3|CUL4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2501831054688 2 543.755484 1085.49641 0.20283 0.00011029 -0.35507 -0.00019307 -0.15224 -8.2779E-05 543.7548139433865 91.688 0.30982 91.207 90.977 91.287 -0.48092 25 21 2 0 0 0 8.7369 1 49991 49991 2.5775 0 1 689420 + 50003 21424 33842 34611 58167 58167 -0.04291360468300809 QNQPQQYDY 9 Unmodified _QNQPQQYDY_ 0 0 0 REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1726379394531 3 395.171999 1182.49417 0.74825 0.00029569 -0.12189 -4.8167E-05 0.62636 0.00024752 395.1719965234107 81.643 0.38385 81.148 80.929 81.313 -0.4952 40 15 4 0 0 0 0.58822 1 44679 44679 2.086 0.34373 1 1641400 + 50004 22917 33843 34612 58168 58168 -0.08978117672427288 QNQPQQYDY 9 Unmodified _QNQPQQYDY_ 0 0 0 REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.171999 1182.49417 0.74825 0.00029569 -0.12189 -4.8167E-05 0.62636 0.00024752 395.1719965234107 81.643 0.38385 81.148 80.929 81.313 -0.4952 -0.010017 0.00017732 NaN 2.086 40 15 4 NaN NaN NaN NaN 0 NaN NaN 0 1641400 + 50005 22917 33843 34612 -0.08978117672427288 QNQPQQYDY 9 Unmodified _QNQPQQYDY_ 0 0 0 REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 395.171999 1182.49417 0.88145 0.00034832 -3.0933 -0.0012224 -2.2118 -0.00087405 395.1716819884119 81.108 0.37791 81.168 80.966 81.343 0.059929 0.010017 -0.0033453 NaN 2.086 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1663600 + 50006 22917 33843 34612 -0.08978117672427288 QNREEPAVQF 10 Unmodified _QNREEPAVQF_ 0 0 0 nc|ENSG00000120156|Q02763-3|TEK nc|ENSG00000120156|Q02763-3|TEK nc|ENSG00000120156|Q02763-3|TEK MSMS AL20221201_MKP_PDAC_01 4 406.5367736816406 3 406.53516 1216.58365 NaN NaN NaN NaN NaN NaN NaN 19.156 1 16.5 16 17 -2.6564 0 0 0 0.97302 1 10126 10126 1.7423 0.14999 1 50007 16157 33844 34613 58169 58169 -0.015978629930714305 QNRESERE 8 Unmodified _QNRESERE_ 0 0 0 REV__ENSG00000117724|ENST00000366955|CENPF REV__ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2446899414062 2 524.244326 1046.4741 0.36374 0.00019069 0.52326 0.00027431 0.887 0.000465 524.2447701329985 88.308 0.37601 87.804 87.602 87.978 -0.50423 35 16 3 0 0 0 0.80383 1 48368 48368 4.3292 0 1 2104700 + 50008 19123 33845 34614 58170 58170 -0.04727868612371822 QNRLTYIF 8 Unmodified _QNRLTYIF_ 0 0 0 REV__ENSG00000179626|ENST00000641569|OR6C4;REV__ENSG00000205329|ENST00000641740|OR6C3 REV__ENSG00000179626|ENST00000641569|OR6C4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2229614257812 2 527.787641 1053.56073 0.83572 0.00044108 1.9323 0.0010198 2.768 0.0014609 527.7881049806927 36.729 0.20916 36.729 36.628 36.837 0 13 9 2 0 0 0 8.7369 1 19550 19550 8.5933 0.68312 1 1085300 + 50009 23106;24221 33846 34615 58171 58171 0.036091626800953236 QNRPKKLHL 9 Unmodified _QNRPKKLHL_ 0 0 0 REV__ENST00000432587.6_1_1:168014203-168014425:+|nuORF REV__ENST00000432587.6_1_1:168014203-168014425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5687255859375 3 378.568247 1132.68291 0.16916 6.4039E-05 0.59347 0.00022467 0.76263 0.00028871 378.9026514233774 28.196 0.17354 28.226 28.134 28.308 0.029566 10 6 2 0 0 0 0.42049 1 14699 14699 11.495 3.3392 1 1557800 + 50010 26989 33847 34616 58172 58172 0.1218762448236248 QNRQYMEVY 9 Unmodified _QNRQYMEVY_ 0 0 0 REV__nc|ENSG00000088899|O60299-2|LZTS3 REV__nc|ENSG00000088899|O60299-2|LZTS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.7012023925781 3 410.857245 1229.54991 NaN NaN NaN NaN NaN NaN NaN 16.712 1 16.712 16.212 17.212 0 0 0 0 0.85359 1 8173 8173 1.0715 0.3738 1 + 50011 17818 33848 34617 58173 58173 -0.05568607756458732 QNSGQFFYY 9 Unmodified _QNSGQFFYY_ 0 0 0 REV__ENSG00000262406|ENST00000571244|MMP12 REV__ENSG00000262406|ENST00000571244|MMP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2506713867188 2 577.251089 1152.48762 -0.46797 -0.00027013 0.94336 0.00054456 0.4754 0.00027442 577.7529590920676 18.865 0.063366 18.888 18.849 18.913 0.023106 6 4 2 0 0 0 0.61381 1 9495 9495 0.52476 0 1 337590 + 50012 24592 33849 34618 58174 58174 -0.08252010833143686 QNSGQFFYY 9 Unmodified _QNSGQFFYY_ 0 0 0 REV__ENSG00000262406|ENST00000571244|MMP12 REV__ENSG00000262406|ENST00000571244|MMP12 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.251089 1152.48762 -0.46797 -0.00027013 0.94336 0.00054456 0.4754 0.00027442 577.7529590920676 18.865 0.063366 18.888 18.849 18.913 0.023106 -0.00045914 0.0018682 NaN 0.52476 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 337590 + 50013 24592 33849 34618 -0.08252010833143686 QNTCEYNAF 9 Unmodified _QNTCEYNAF_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2186889648438 2 545.218931 1088.42331 0.19869 0.00010833 -0.091324 -4.9791E-05 0.10737 5.8538E-05 545.2188455118071 52.564 0.34833 52.564 52.402 52.75 0 39 15 3 0 0 0 0.55144 1 29063 29063 4.3292 4.3292 1 6545300 50014 4383 33850 34619 58175 58175 -0.11736533981616049 QNTRCLKGY 9 Unmodified _QNTRCLKGY_ 0 0 0 REV__nc|ENSG00000182149|P53990-2|IST1 REV__nc|ENSG00000182149|P53990-2|IST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7744750976562 2 541.774208 1081.53386 NaN NaN NaN NaN NaN NaN NaN 91.513 1 91.513 91.013 92.013 0 0 0 0 0.83049 1 50609 50609 3.9444 0 1 + 50015 23244 33851 34620 58176 58176 -0.0036426920269150287 QNTSAGKDPL 10 Unmodified _QNTSAGKDPL_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MSMS AL20221201_MKP_PDAC_01 4 515.7628784179688 2 515.76182 1029.50909 NaN NaN NaN NaN NaN NaN NaN 24.687 1 21.804 21.304 22.304 -2.8831 0 0 0 0.59691 1 13456 13456 21.537 3.3906 1 50016 3355 33852 34621 58177 58177 -0.00448625804438052 QNVSQENEMF 10 Unmodified _QNVSQENEMF_ 0 0 0 nc|ENSG00000162892|Q13007-3|IL24 nc|ENSG00000162892|Q13007-3|IL24 nc|ENSG00000162892|Q13007-3|IL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.2623291015625 2 613.261327 1224.5081 0.11672 7.158E-05 1.4469 0.00088731 1.5636 0.00095889 613.2627582486645 60.378 0.22286 59.887 59.766 59.988 -0.49079 21 10 3 0 0 0 0.48505 1 32855 32855 17.113 4.8722 1 6129700 50017 16322 33853 34622 58178 58178 -0.09517208235661201 QNVSTHVF 8 Unmodified _QNVSTHVF_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2354431152344 2 466.235242 930.45593 0.49081 0.00022883 1.1145 0.00051961 1.6053 0.00074844 466.2357067840304 50.816 0.39823 50.762 50.608 51.007 -0.053871 34 19 2 0 0 0 0.80143 1 27442 27442 5.7604 2.1639 1 1346000 + 50018 17004 33854 34623 58179 58179 -0.012079587964194616 QNYDLRRL 8 Unmodified _QNYDLRRL_ 0 0 0 ENST00000566455.1_1_16:77227993-77232202:+|nuORF;nc|ENSG00000164077|Q86VX9-3|MON1A;nc|ENSG00000164077|Q86VX9-2|MON1A;ENST00000486107.5_1_3:49947550-49967319:-|nuORF;nc|ENSG00000103111|Q7L1V2-2|MON1B;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000103111|ENST00000248248|MON1B;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A ENST00000566455.1_1_16:77227993-77232202:+|nuORF ENST00000566455.1_1_16:77227993-77232202:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.295654296875 2 539.293622 1076.57269 NaN NaN NaN NaN NaN NaN NaN 89.877 1 89.877 89.377 90.377 0 0 0 0 0.97444 1 49725 49725 2.3027 0 1 50019 15418 33855 34624 58180 58180 0.03746779423318003 QNYELFVHF 9 Unmodified _QNYELFVHF_ 0 0 0 REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF;REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7894897460938 2 598.790381 1195.56621 -0.10042 -6.013E-05 -3.6443 -0.0021822 -3.7447 -0.0022423 598.7891033752427 78.571 0.24834 78.085 77.99 78.238 -0.48596 17 9 3 0 0 0 0.58466 1 43063 43063 2.3027 0.24298 1 798700 + 50020 19670;29258 33856 34625 58181 58181 -0.02375158528047905 QNYELFVHF 9 Unmodified _QNYELFVHF_ 0 0 0 REV__ENST00000601728.1_1_19:23310047-23310578:-|nuORF;REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.790381 1195.56621 -0.10042 -6.013E-05 -3.6443 -0.0021822 -3.7447 -0.0022423 598.7891033752427 78.571 0.24834 78.085 77.99 78.238 -0.48596 0 0 NaN 2.3027 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 798700 + 50021 19670;29258 33856 34625 -0.02375158528047905 QNYVKPVFES 10 Unmodified _QNYVKPVFES_ 0 0 0 REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.8095703125 2 605.808771 1209.60299 NaN NaN NaN NaN NaN NaN NaN 24.163 1 24.163 23.663 24.663 0 0 0 0 0.97855 1 12337 12337 2.9952 0 1 + 50022 20688 33857 34626 58182 58182 0.006570932978547717 QNYWEMCSFSE 11 Unmodified _QNYWEMCSFSE_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.2673950195312 2 712.268295 1422.52204 -0.17722 -0.00012623 -1.1506 -0.00081957 -1.3279 -0.00094579 712.7685792640127 25.075 0.26384 22.192 22.008 22.272 -2.8831 39 26 2 0 0 0 0.69838 1 13722 13722 8.7454 5.4641 1 14977000 50023 3172 33858 34627 58183 58183 -0.17232298798853662 QPAAAILAL 9 Unmodified _QPAAAILAL_ 0 0 0 ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.5297241210938 1 867.52983 866.522553 0.14082 0.00012217 0.0055792 4.8401E-06 0.1464 0.00012701 867.5299499745664 76.243 0.33185 76.243 76.064 76.396 0 29 13 3 0 0 0 0.012148 2 42355 42355;42459 74.423 33.974 1 3469600 50024 7648 33859 34628 58184;58185 58184 0.08395276765452309 QPAAAILAL 9 Unmodified _QPAAAILAL_ 0 0 0 ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2687072753906 2 434.268553 866.522553 0.1977 8.5855E-05 1.2363 0.00053688 1.434 0.00062274 434.2691680391331 76.187 0.71352 76.187 76.021 76.734 0 66 29 4 0 0 0 0.087258 1 42433 42433 36.044 1.8569 1 6938600 50025 7648 33859 34628 58186 58186 0.08395276765452309 QPAAAILAL 9 Unmodified _QPAAAILAL_ 0 0 0 ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 867.5293579101562 1 867.52983 866.522553 -0.6158 -0.00053423 0.68878 0.00059754 0.07298 6.3312E-05 867.5304563150672 76.635 0.45847 76.156 75.955 76.413 -0.47945 77 28 4 0 0 0 0.0090851 1 41976 41976 85.357 35.688 1 23156000 50026 7648 33859 34628 58187 58187 0.08395276765452309 QPAAAILAL 9 Unmodified _QPAAAILAL_ 0 0 0 ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2688293457031 2 434.268553 866.522553 0.96096 0.00041732 -0.35303 -0.00015331 0.60793 0.000264 434.2684265068411 83.036 0.79524 76.86 76.458 77.253 -6.1757 118 43 4 0 0 0 0.012148 3 54670 54524;54670;54801 74.423 26.895 1 138710000 50027 7648 33859 34628 58188;58189;58190 58189 0.08395276765452309 QPAAAILAL 9 Unmodified _QPAAAILAL_ 0 0 0 ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA ENSG00000167653|ENST00000301258|PSCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.5302734375 1 867.52983 866.522553 0.67921 0.00058924 0.03591 3.1153E-05 0.71512 0.00062039 867.5297986889843 83.074 0.65572 76.899 76.536 77.192 -6.1757 84 35 3 0 0 0 0.0083087 3 54536 54536;54667;54798 97.075 43.499 1 56998000 50028 7648 33859 34628 58191;58192;58193 58191 0.08395276765452309 QPAAFIVTQY 10 Unmodified _QPAAFIVTQY_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2998657226562 2 569.300581 1136.58661 0.32147 0.00018301 0.22465 0.00012789 0.54612 0.0003109 569.3002099469574 66.39 0.36604 65.907 65.744 66.11 -0.48324 44 18 3 0 0 0 0.1028 1 36224 36224 46.021 22 1 6086200 50029 6218 33860 34629 58194 58194 0.023780121317713565 QPAAFIVTQY 10 Unmodified _QPAAFIVTQY_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK nc|ENSG00000152894|Q15262|PTPRK nc|ENSG00000152894|Q15262|PTPRK MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 569.300581 1136.58661 1.096 0.00062393 3.7178 0.0021166 4.8138 0.0027405 569.8037958365818 72.258 0.098 66.082 66.043 66.141 -6.1757 0.087582 0.0037335 NaN 46.021 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8458700 50030 6218 33860 34629 0.023780121317713565 QPAAKRQELE 10 Unmodified _QPAAKRQELE_ 0 0 0 REV__nc|ENSG00000175920|Q18PE1-3|DOK7 REV__nc|ENSG00000175920|Q18PE1-3|DOK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5454406738281 3 390.547288 1168.62004 NaN NaN NaN NaN NaN NaN NaN 23.334 1 23.352 22.852 23.852 0.01749 0 0 0 0.97302 1 12016 12016 1.7423 0.63252 1 + 50031 29798 33861 34630 58195 58195 0.042470139036595356 QPAAVVAAL 9 Unmodified _QPAAVVAAL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2535400390625 2 420.252903 838.491253 -0.28457 -0.00011959 0.16312 6.8553E-05 -0.12144 -5.1037E-05 420.2531290857553 56.345 0.3145 56.345 56.204 56.518 0 21 14 2 0 0 0 0.087258 1 31315 31315 36.044 9.7029 1 3526200 50032 2488 33862 34631 58196 58196 0.06554703731353584 QPACKRLTL 9 Carbamidomethyl (C) _QPAC(Carbamidomethyl (C))KRLTL_ QPAC(1)KRLTL QPAC(50)KRLTL 0 1 0 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8082885742188 2 543.808051 1085.60155 0.65872 0.00035822 0.069545 3.7819E-05 0.72827 0.00039604 543.8083189380145 28.731 0.2804 25.583 25.421 25.701 -3.1482 25 13 2 0 0 0 0.040683 1 16024 16024 49.554 21.067 1 16523000 50033 10921 33863 34632 58197 58197 961 0.06217180728094718 QPACKRLTL 9 Carbamidomethyl (C) _QPAC(Carbamidomethyl (C))KRLTL_ QPAC(1)KRLTL QPAC(44)KRLTL 0 1 0 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8745422363281 3 362.874459 1085.60155 1.4324 0.00051979 -0.7919 -0.00028736 0.64053 0.00023243 362.8743874581894 28.729 0.46246 25.581 25.282 25.744 -3.1482 55 22 4 0 0 0 0.052231 1 16099 16099 44.392 26.019 1 54991000 50034 10921 33863 34632 58198 58198 961 0.06217180728094718 QPADVFPRL 9 Unmodified _QPADVFPRL_ 0 0 0 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7882080078125 2 521.787641 1041.56073 0.19195 0.00010016 -0.017544 -9.1543E-06 0.1744 9.1001E-05 521.7876437125797 59.773 0.2579 59.282 59.171 59.429 -0.49079 18 12 2 0 0 0 0.13231 1 32547 32547 29.841 5.82 1 2953100 50035 390;3592 33864 34633 58199 58199 0.04161162680134112 QPADVIKTHM 10 Unmodified _QPADVIKTHM_ 0 0 0 ENSG00000144659|ENST00000650617|SLC25A38;ENST00000458247.1_1_1:172718057-172718594:+|nuORF ENSG00000144659|ENST00000650617|SLC25A38 ENSG00000144659|ENST00000650617|SLC25A38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.534912109375 3 380.534103 1138.58048 1.3807 0.00052539 -0.62752 -0.00023879 0.75316 0.0002866 380.53392111291333 36.855 0.44064 32.572 32.324 32.765 -4.2835 69 26 4 0 0 0 0.41822 1 21512 21512 18.34 12.556 1 24000000 50036 5629 33865 34634 58200 58200 0.01673170628578191 QPAELLPQF 9 Unmodified _QPAELLPQF_ 0 0 0 ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.78076171875 2 521.782025 1041.5495 0.41121 0.00021456 0.069869 3.6456E-05 0.48108 0.00025102 522.2837179033127 77.068 0.20889 77.068 77.033 77.242 0 18 10 2 0 0 0 0.10734 1 42856 42856 32.305 5.4218 1 809230 50037 1893 33866 34635 58201 58201 0.030383405859765844 QPAELLPQF 9 Unmodified _QPAELLPQF_ 0 0 0 ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A ENSG00000100934|ENST00000307712|SEC23A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7806396484375 2 521.782025 1041.5495 -0.78324 -0.00040868 0.43054 0.00022465 -0.3527 -0.00018403 521.7821471863754 77.522 0.3087 77.039 76.935 77.244 -0.4826 25 14 2 0 0 0 0.008678 1 42449 42449 88.904 42.883 1 1959300 50038 1893 33866 34635 58202 58202 0.030383405859765844 QPAEMAAEL 9 Oxidation (M) _QPAEM(Oxidation (M))AAEL_ QPAEM(1)AAEL QPAEM(82)AAEL 0 0 1 ENST00000588356.1_1_19:2235749-2236304:-|nuORF;ENST00000588450.1_1_19:2235759-2236247:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1 ENST00000588356.1_1_19:2235749-2236304:-|nuORF ENST00000588356.1_1_19:2235749-2236304:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2257385253906 2 488.226225 974.437897 NaN NaN NaN NaN NaN NaN NaN 32.387 1 32.387 31.887 32.887 0 0 0 0 0.017438 1 16917 16917 81.89 38.032 1 50039 2252 33867 34636 58203 58203 387 -0.050344618334634106 QPAEMAAEL 9 Oxidation (M) _QPAEM(Oxidation (M))AAEL_ QPAEM(1)AAEL QPAEM(89)AAEL 0 0 1 ENST00000588356.1_1_19:2235749-2236304:-|nuORF;ENST00000588450.1_1_19:2235759-2236247:-|nuORF;ENSG00000104886|ENST00000326631|PLEKHJ1 ENST00000588356.1_1_19:2235749-2236304:-|nuORF ENST00000588356.1_1_19:2235749-2236304:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2261352539062 2 488.226225 974.437897 1.2153 0.00059336 0.12956 6.3256E-05 1.3449 0.00065662 488.22648762900934 37.363 0.35669 33.079 32.857 33.213 -4.2835 32 20 2 0 0 0 0.0086722 1 21888 21888 88.954 30.275 1 8717600 50040 2252 33867 34636 58204 58204 387 -0.050344618334634106 QPAENISKDLY 11 Unmodified _QPAENISKDLY_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.3223266601562 2 639.322242 1276.62993 0.034775 2.2233E-05 -0.073496 -4.6988E-05 -0.038721 -2.4755E-05 639.3222140248876 39.689 0.34331 39.689 39.53 39.873 0 58 16 5 0 0 0 0.014635 2 21347 21241;21347 67.081 35.812 1 47815000 50041 7491 33868 34637 58205;58206 58206 0.0026815711837571143 QPAENISKDLY 11 Unmodified _QPAENISKDLY_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3219604492188 2 639.322242 1276.62993 0.19681 0.00012583 0.045351 2.8994E-05 0.24217 0.00015482 639.3221815627054 45.23 0.44721 40.275 40.03 40.477 -4.9549 80 30 3 0 0 0 1.764E-06 2 27601 27601;27744 121.5 84.429 1 78538000 50042 7491 33868 34637 58207;58208 58207 0.0026815711837571143 QPAENVNQY 9 Unmodified _QPAENVNQY_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7461547851562 2 531.74617 1061.47779 -0.14382 -7.6478E-05 -0.16748 -8.9057E-05 -0.3113 -0.00016554 531.7462069688338 24.764 0.35977 24.764 24.572 24.932 0 59 21 5 0 0 0 0.013323 2 12695 12593;12695 71.134 38.828 1 6018300 50043 4284 33869 34638 58209;58210 58210 -0.050491988385147124 QPAENVNQY 9 Unmodified _QPAENVNQY_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 531.74617 1061.47779 0.41681 0.00022163 0.63063 0.00033533 1.0474 0.00055697 532.2485271675076 27.598 0.15943 24.561 24.435 24.594 -3.0365 -0.1013 0.00072707 NaN 71.134 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 7243900 50044 4284 33869 34638 -0.050491988385147124 QPAFDFDRY 9 Unmodified _QPAFDFDRY_ 0 0 0 nc|ENSG00000091732|Q86WB0-3|ZC3HC1;nc|ENSG00000091732|Q86WB0-2|ZC3HC1;ENSG00000091732|ENST00000358303|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 nc|ENSG00000091732|Q86WB0-3|ZC3HC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7642822265625 2 579.764363 1157.51417 NaN NaN NaN NaN NaN NaN NaN 53.322 1 53.322 52.822 53.822 0 0 0 0 0.18978 1 29548 29548 32.037 16.19 1 50045 1598 33870 34639 58211 58211 -0.05828321941817194 QPAGILEHQY 10 Unmodified _QPAGILEHQY_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2929077148438 2 578.293288 1154.57202 0.51869 0.00029995 -2.1581 -0.001248 -1.6394 -0.00094806 578.292058997605 38.406 0.37167 38.406 38.288 38.66 0 42 27 2 0 0 0 0.025861 1 20490 20490 70.332 51.075 1 6338200 50046 4107 33871 34640 58212 58212 0.0009193998362206912 QPAIIDGELY 10 Unmodified _QPAIIDGELY_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC;ENST00000437039.1_1_2:179319678-179320041:+|nuORF ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7904052734375 2 559.790047 1117.56554 0.36721 0.00020556 0.055744 3.1205E-05 0.42295 0.00023676 559.7900367234355 63.982 0.88377 63.982 63.612 64.496 0 120 37 4 0 0 0 0.0072789 4 35757 35561;35663;35757;35854 92.653 54.679 1 34245000 50047 1552 33872 34641 58213;58214;58215;58216 58215 0.011460020322374476 QPAIIDGELY 10 Unmodified _QPAIIDGELY_ 0 0 0 ENSG00000090273|ENST00000321265|NUDC;ENST00000437039.1_1_2:179319678-179320041:+|nuORF ENSG00000090273|ENST00000321265|NUDC ENSG00000090273|ENST00000321265|NUDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7910766601562 2 559.790047 1117.56554 1.3292 0.00074408 0.16482 9.2262E-05 1.494 0.00083634 559.7905874525886 71.566 0.65058 65.39 65.026 65.676 -6.1757 77 33 4 0 0 0 0.0575 2 46850 46726;46850 56.177 30.778 1 76617000 50048 1552 33872 34641 58217;58218 58218 0.011460020322374476 QPAKADKESF 10 Unmodified _QPAKADKESF_ 0 0 0 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1926879882812 3 374.192623 1119.55604 -0.6142 -0.00022983 1.2983 0.00048583 0.68414 0.000256 374.19312254791936 16.097 0.24585 16.097 15.928 16.174 0 73 52 2 0 0 0 0.63399 1 7812 7812 8.4443 0.83535 1 760380 50049 10080 33873 34642 58219 58219 0.0010423374669699115 QPAKPTKVTL 10 Unmodified _QPAKPTKVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5569763183594 3 361.557125 1081.64954 -0.3691 -0.00013345 0.49559 0.00017918 0.12649 4.5733E-05 361.5572890368211 24.351 0.20656 24.351 24.263 24.469 0 30 12 3 0 0 0 0.65773 1 12426 12426 10.315 3.5921 1 1877500 50050 2175 33874 34643 58220 58220 0.1119857791979939 QPAKPTKVTL 10 Unmodified _QPAKPTKVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5572509765625 3 361.557125 1081.64954 1.2134 0.00043872 -0.17307 -6.2575E-05 1.0403 0.00037614 361.55704140708775 26.773 0.43702 23.737 23.512 23.949 -3.0365 64 22 4 0 0 0 0.16005 2 14842 14725;14842 39.923 23.648 1 57703000 50051 2175 33874 34643 58221;58222 58222 0.1119857791979939 QPAKPTKVTL 10 Unmodified _QPAKPTKVTL_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8326416015625 2 541.832049 1081.64954 0.41463 0.00022466 -0.34409 -0.00018644 0.070537 3.8219E-05 541.8319172386471 26.773 0.32329 23.737 23.609 23.932 -3.0365 30 16 3 0 0 0 0.30444 2 14766 14766;14888 27.223 6.8087 1 10566000 50052 2175 33874 34643 58223;58224 58223 0.1119857791979939 QPALPIQPE 9 Unmodified _QPALPIQPE_ 0 0 0 ENSG00000155099|ENST00000285419|PIP4P2 ENSG00000155099|ENST00000285419|PIP4P2 ENSG00000155099|ENST00000285419|PIP4P2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2347412109375 2 496.7742 991.533846 -0.32745 -0.00016267 1.0477 0.00052048 0.72027 0.00035781 496.77510720712127 28.919 0.14276 28.919 28.82 28.963 0 11 6 2 0 0 0 0.21052 1 14915 14915 6.7232 0.96273 1 1225000 50053 6370 33875 34644 58225 58225 0.03774054068958321 QPALQEKHAM 10 Unmodified _QPALQEKHAM_ 0 0 0 ENSG00000123349|ENST00000334478|PFDN5;ENST00000552341.5_1_12:53691573-53693126:+|nuORF;nc|ENSG00000123349|Q99471-3|PFDN5;ENST00000553171.1_1_12:53691669-53691972:+|nuORF ENSG00000123349|ENST00000334478|PFDN5 ENSG00000123349|ENST00000334478|PFDN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8661804199219 3 384.865852 1151.57573 1.5308 0.00058916 1.4607 0.00056216 2.9915 0.0011513 385.2016167398053 20.121 0.18036 17.465 17.312 17.493 -2.6564 14 10 2 0 0 0 0.65471 1 10706 10706 7.9454 2.5427 1 2457500 50054 3699 33876 34645 58226 58226 0.006002864858146495 QPANPTEEY 9 Unmodified _QPANPTEEY_ 0 0 0 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7321166992188 2 524.732729 1047.4509 -0.26732 -0.00014027 -0.51902 -0.00027235 -0.78634 -0.00041262 524.7325301578622 27.503 0.29748 27.503 27.32 27.617 0 28 14 3 0 0 0 0.32871 1 14122 14122 15.847 3.3156 1 3578500 50055 6222 33877 34646 58227 58227 -0.0709230744969318 QPANPTEEY 9 Unmodified _QPANPTEEY_ 0 0 0 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 ENSG00000152944|ENST00000282892|MED21 MSMS AL20221201_MKP_PDAC_01 4 524.73291015625 2 524.732729 1047.4509 NaN NaN NaN NaN NaN NaN NaN 31.927 1 28.232 27.732 28.732 -3.6958 0 0 0 0.18753 1 18133 18133 32.305 9.1571 1 50056 6222 33877 34646 58228 58228 -0.0709230744969318 QPAPAWTTF 9 Unmodified _QPAPAWTTF_ 0 0 0 nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 MSMS AL20221201_MKP_PDAC_01 4 509.7545166015625 2 509.753267 1017.49198 NaN NaN NaN NaN NaN NaN NaN 73.018 1 66.843 66.343 67.343 -6.1757 0 0 0 0.028486 1 47757 47757 68.081 10.609 1 50057 5492 33878 34647 58229 58229 -0.016065016195852877 QPAPELAVF 9 Unmodified _QPAPELAVF_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2640686035156 2 486.263468 970.512382 0.32241 0.00015678 1.1288 0.0005489 1.4512 0.00070568 486.2639726176488 72.489 0.45918 72.489 72.24 72.699 0 46 18 3 0 0 0 0.0090948 2 40383 40281;40383 85.272 45.315 1 7934200 50058 676 33879 34648 58230;58231 58231 0.025946690402292916 QPAPELAVF 9 Unmodified _QPAPELAVF_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2637329101562 2 486.263468 970.512382 0.79223 0.00038523 0.67229 0.00032691 1.4645 0.00071214 486.2637933220087 72.912 0.4424 72.436 72.209 72.651 -0.47588 45 19 3 0 0 0 0.03568 2 39943 39839;39943 52.268 26.869 1 3146600 50059 676 33879 34648 58232;58233 58233 0.025946690402292916 QPAPELAVF 9 Unmodified _QPAPELAVF_ 0 0 0 nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1;ENST00000490265.5_1_X:13771424-13787224:+|nuORF nc|ENSG00000046651|O75665-3|OFD1 nc|ENSG00000046651|O75665-3|OFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2657470703125 2 486.263468 970.512382 1.3946 0.00067814 -0.86883 -0.00042248 0.52577 0.00025566 486.26367644110127 79.555 0.60048 73.38 73.095 73.696 -6.1757 77 35 3 0 0 0 0.0082661 3 52050 52050;52184;52365 92.491 56.364 1 30957000 50060 676 33879 34648 58234;58235;58236 58234 0.025946690402292916 QPAPISPHL 9 Unmodified _QPAPISPHL_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.269287109375 2 480.269084 958.523616 -0.039254 -1.8852E-05 1.9552 0.00093902 1.9159 0.00092017 480.26893996301715 41.895 0.42274 41.895 41.645 42.068 0 61 21 4 0 0 0 0.052168 2 22577 22577;22704 44.407 22.66 1 11570000 50061 465 33880 34649 58237;58238 58237 0.04269491134380132 QPAPISPHL 9 Unmodified _QPAPISPHL_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MSMS AL20221201_MKP_PDAC_01 4 480.2713928222656 2 480.269084 958.523616 NaN NaN NaN NaN NaN NaN NaN 46.799 1 41.718 41.218 42.218 -5.0805 0 0 0 0.071041 1 28973 28973 50.855 24.587 1 50062 465 33880 34649 58239 58239 0.04269491134380132 QPAPISPHL 9 Unmodified _QPAPISPHL_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MSMS AL20221201_MKP_PDAC_01 4 480.2703857421875 2 480.269084 958.523616 NaN NaN NaN NaN NaN NaN NaN 46.979 1 41.898 41.398 42.398 -5.0805 0 0 0 0.035065 1 29106 29106 64.236 30.049 1 50063 465 33880 34649 58240 58240 0.04269491134380132 QPAPPREAHF 10 Unmodified _QPAPPREAHF_ 0 0 0 ENSG00000122026|ENST00000311549|RPL21;ENST00000483765.5_1_13:27827977-27830662:+|nuORF ENSG00000122026|ENST00000311549|RPL21 ENSG00000122026|ENST00000311549|RPL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8651428222656 3 383.86484 1148.57269 -0.46848 -0.00017983 1.2318 0.00047284 0.7633 0.000293 383.86513113425593 25.329 0.24236 25.329 25.184 25.427 0 23 11 3 0 0 0 0.68209 1 12948 12948 2.6312 0.72486 1 1872500 50064 3618 33881 34650 58241 58241 0.0043477942331264785 QPAPRSQQL 9 Unmodified _QPAPRSQQL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7811889648438 2 512.780348 1023.54614 -0.31869 -0.00016342 0.47129 0.00024167 0.1526 7.825E-05 512.7806568485928 18.952 0.32337 18.952 18.806 19.13 0 76 24 4 0 0 0 0.023481 2 9421 9421;9519 60.074 14.053 1 7877000 50065 16188 33882 34651 58242;58243 58242 0.03531090531987502 QPAPRSQQL 9 Unmodified _QPAPRSQQL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7811279296875 2 512.780348 1023.54614 1.0289 0.00052761 0.048019 2.4623E-05 1.0769 0.00055223 512.7804325456931 20.584 0.48355 17.891 17.627 18.11 -2.693 79 28 4 0 0 0 0.0082475 3 10983 10887;10983;11092 92.653 43.38 1 19936000 50066 16188 33882 34651 58244;58245;58246 58245 0.03531090531987502 QPAPTPLKM 9 Oxidation (M) _QPAPTPLKM(Oxidation (M))_ QPAPTPLKM(1) QPAPTPLKM(58) 0 0 1 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1;ENST00000476994.1_1_17:17723326-17726886:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7708740234375 2 499.770603 997.526652 0.54166 0.0002707 -0.24322 -0.00012155 0.29844 0.00014915 499.7704045215906 27.722 0.40844 24.685 24.454 24.863 -3.0365 34 20 2 0 0 0 0.025842 1 15358 15358 57.722 30.093 1 15103000 50067 1078 33883 34652 58247 58247 178 0.027789981968794564 QPAQDIFSVY 10 Unmodified _QPAQDIFSVY_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2885131835938 2 584.287671 1166.56079 -0.18424 -0.00010765 0.36618 0.00021395 0.18194 0.0001063 584.2879685295829 70.766 0.7086 70.766 70.542 71.251 0 138 55 3 0 0 0 0.1942 2 39401 39401;39505 34.402 27.629 1 8096800 50068 6855 33884 34653 58248;58249 58248 -0.015828821105060342 QPAQDIFSVY 10 Unmodified _QPAQDIFSVY_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2876586914062 2 584.287671 1166.56079 0.39484 0.0002307 0.72327 0.0004226 1.1181 0.0006533 584.2879777332872 71.321 0.82842 70.844 70.611 71.439 -0.47735 90 34 4 0 0 0 0.10424 2 38992 38992;39107 45.7 25.285 1 9017700 50069 6855 33884 34653 58250;58251 58250 -0.015828821105060342 QPAQDIFSVY 10 Unmodified _QPAQDIFSVY_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MSMS AL20221201_MKP_PDAC_01 4 584.2879028320312 2 584.287671 1166.56079 NaN NaN NaN NaN NaN NaN NaN 78.228 1 72.052 71.552 72.552 -6.1757 0 0 0 0.3465 1 51196 51196 34.402 9.0024 1 50070 6855 33884 34653 58252 58252 -0.015828821105060342 QPAQSLGEIH 10 Unmodified _QPAQSLGEIH_ 0 0 0 REV__ENSG00000197019|ENST00000357949|SERTAD1 REV__ENSG00000197019|ENST00000357949|SERTAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2777709960938 2 540.277638 1078.54072 -0.3672 -0.00019839 0.29717 0.00016055 -0.070033 -3.7837E-05 540.2777565145619 18.152 0.13905 18.152 18.077 18.216 0 23 15 2 0 0 0 0.70151 1 8990 8990 2.7352 0.15772 1 984980 + 50071 23888 33885 34654 58253 58253 0.00459366949530704 QPAQSLGEIH 10 Unmodified _QPAQSLGEIH_ 0 0 0 REV__ENSG00000197019|ENST00000357949|SERTAD1 REV__ENSG00000197019|ENST00000357949|SERTAD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.277638 1078.54072 -0.3672 -0.00019839 0.29717 0.00016055 -0.070033 -3.7837E-05 540.2777565145619 18.152 0.13905 18.152 18.077 18.216 0 0 0 NaN 2.7352 23 15 2 NaN NaN NaN NaN 0 NaN NaN 0 984980 + 50072 23888 33885 34654 0.00459366949530704 QPARSRLWL 9 Unmodified _QPARSRLWL_ 0 0 0 nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-4|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2200927734375 3 376.220847 1125.64071 0.21674 8.1542E-05 0.40434 0.00015212 0.62108 0.00023366 376.22089683397564 42.343 0.2591 42.334 42.208 42.467 -0.0088196 17 11 2 0 0 0 0.34748 1 22664 22664 14.957 1.3423 1 4915400 50073 4716 33886 34655 58254 58254 0.08291649073998997 QPASAAAAAAF 11 Unmodified _QPASAAAAAAF_ 0 0 0 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2486267089844 2 488.248349 974.482145 0.40888 0.00019964 0.36693 0.00017915 0.77581 0.00037879 488.2485866927316 42.264 0.25928 42.264 42.161 42.42 0 27 12 3 0 0 0 0.0079227 1 22880 22880 70.332 0 1 4386300 50074 2393 33887 34656 58255 58255 -0.006116896249750425 QPASAAAAAAF 11 Unmodified _QPASAAAAAAF_ 0 0 0 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 ENSG00000106031|ENST00000649031|HOXA13 MSMS AL20221201_MKP_PDAC_01 4 488.2491149902344 2 488.248349 974.482145 NaN NaN NaN NaN NaN NaN NaN 48.502 1 43.106 42.606 43.606 -5.3961 0 0 0 0.10709 1 30219 30219 49.554 5.7819 1 50075 2393 33887 34656 58256 58256 -0.006116896249750425 QPASAILYDY 10 Unmodified _QPASAILYDY_ 0 0 0 CON__P01030;CON__ENSEMBL:ENSBTAP00000007350 CON__P01030 CON__P01030 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7821655273438 2 570.782222 1139.54989 0.33858 0.00019326 -1.4677 -0.00083774 -1.1291 -0.00064448 570.7814910837435 63.97 0.52264 63.97 63.732 64.255 0 49 21 3 0 0 0 0.52659 1 35700 35700 17.113 6.289 1 2231200 + 50076 155 33888 34657 58257 58257 -0.014302844848316454 QPASFAIRL 9 Unmodified _QPASFAIRL_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7886047363281 2 501.790184 1001.56581 0.38812 0.00019476 -0.43662 -0.00021909 -0.048498 -2.4336E-05 501.7897575829682 62.373 0.20931 61.886 61.788 61.997 -0.48764 18 9 2 0 0 0 0.13231 1 33968 33968 29.841 10.402 1 1668100 50077 16209 33889 34658 58258 58258 0.06509466542752307 QPASFAIRL 9 Unmodified _QPASFAIRL_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.787353515625 2 501.790184 1001.56581 0.27449 0.00013774 -0.29721 -0.00014914 -0.022726 -1.1404E-05 501.7900275679038 61.986 0.33165 61.953 61.808 62.14 -0.032787 42 16 3 0 0 0 0.05483 2 33803 33803;33905 43.772 11.467 1 45248000 50078 16209 33889 34658 58259;58260 58259 0.06509466542752307 QPASFAIRL 9 Unmodified _QPASFAIRL_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7880554199219 2 501.790184 1001.56581 0.66733 0.00033486 0.018958 9.5127E-06 0.68628 0.00034437 501.789437821357 66.865 0.67657 60.689 60.214 60.89 -6.1757 56 38 2 0 0 0 0.05483 2 43611 43482;43611 43.772 16.889 1 96181000 50079 16209 33889 34658 58261;58262 58262 0.06509466542752307 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2474365234375 2 460.247818 918.481082 0.57194 0.00026323 -0.72028 -0.00033151 -0.14834 -6.8273E-05 460.2474773252838 65.816 0.43334 65.816 65.597 66.03 0 55 21 3 0 0 0 0.015445 2 36762 36662;36762 68.081 30.107 1 11468000 50080 9884;14271 33890 34659 58263;58264 58264 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 919.4869995117188 1 919.488359 918.481082 0.146 0.00013424 -1.9016 -0.0017485 -1.7556 -0.0016143 919.4864683982647 65.817 0.26328 65.817 65.695 65.959 0 22 13 2 0 0 0 0.013041 1 36690 36690 71.922 21.989 1 2069800 50081 9884;14271 33890 34659 58265 58265 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2478332519531 2 460.247818 918.481082 0.0034861 1.6045E-06 0.12525 5.7644E-05 0.12873 5.9248E-05 460.24781438651723 66.304 0.50347 65.821 65.586 66.09 -0.48323 75 26 4 0 0 0 0.03568 2 36123 36123;36232 52.268 19.963 1 42643000 50082 9884;14271 33890 34659 58266;58267 58266 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 919.4866333007812 1 919.488359 918.481082 -0.102 -9.3791E-05 -1.0707 -0.00098449 -1.1727 -0.0010783 919.4865520075941 66.312 0.41777 65.829 65.651 66.068 -0.48323 54 22 3 0 0 0 0.0059585 3 36145 36145;36185;36243 114.65 68.628 1 11044000 50083 9884;14271 33890 34659 58268;58269;58270 58268 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2479248046875 2 460.247818 918.481082 1.0765 0.00049544 0.050659 2.3316E-05 1.1271 0.00051875 460.24768150896926 71.91 0.45738 65.734 65.462 65.919 -6.1757 70 25 4 0 0 0 0.015445 2 46923 46923;47067 68.081 30.107 1 190950000 50084 9884;14271 33890 34659 58271;58272 58271 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 919.4876708984375 1 919.488359 918.481082 0.86109 0.00079176 -1.853 -0.0017038 -0.99188 -0.00091202 919.4867215224845 71.897 0.32288 65.721 65.537 65.86 -6.1757 41 18 3 0 0 0 0.028475 2 47091 46932;47091 56.177 12.319 1 55302000 50085 9884;14271 33890 34659 58273;58274 58274 0.01858096006139931 QPASFAVSL 9 Unmodified _QPASFAVSL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA;ENST00000490936.5_1_X:153578959-153579424:-|nuORF nc|ENSG00000196924|P21333-2|FLNA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 460.247818 918.481082 1.0493 0.00048295 -0.078871 -3.63E-05 0.97046 0.00044665 460.2480029678761 65.841 0.31649 65.85 65.747 66.064 0.0095596 0.045025 7.3965E-05 NaN 68.081 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1670100 50086 9884;14271 33890 34659 0.01858096006139931 QPATPTTYGL 10 Unmodified _QPATPTTYGL_ 0 0 0 REV__ENST00000479135.5_1_22:29673993-29684776:+|nuORF REV__ENST00000479135.5_1_22:29673993-29684776:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7686767578125 2 524.769114 1047.52368 NaN NaN NaN NaN NaN NaN NaN 84.969 1 84.969 84.469 85.469 0 0 0 0 0.96981 1 47095 47095 3.9444 0 1 + 50087 27648 33891 34660 58275 58275 0.0018144634370855783 QPAWIRGGL 9 Unmodified _QPAWIRGGL_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2825317382812 2 499.282526 996.550499 0.46167 0.0002305 -0.79706 -0.00039796 -0.3354 -0.00016746 499.28207145891366 52.108 0.27306 52.049 51.854 52.127 -0.058918 23 12 2 0 0 0 0.34999 1 28211 28211 14.838 5.4908 1 2308400 50088 16329 33892 34661 58276 58276 0.05208599745560605 QPCFYGIKQF 10 Unmodified _QPCFYGIKQF_ 0 0 0 nc|ENSG00000186940|Q5T1J5|CHCHD2P9 nc|ENSG00000186940|Q5T1J5|CHCHD2P9 nc|ENSG00000186940|Q5T1J5|CHCHD2P9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.5914611816406 3 410.870715 1229.59032 1.3358 0.00054885 -3.2173 -0.0013219 -1.8815 -0.00077304 410.86943377517326 20.974 0.236 18.281 18.148 18.384 -2.693 18 12 2 0 0 0 0.23896 1 11256 11256 1.7423 0.14999 1 1907200 50089 16464 33893 34662 58277 58277 -0.015296413660507824 QPCGLPPRPGL 11 Unmodified _QPCGLPPRPGL_ 0 0 0 REV__ENST00000557439.5_1_14:104171572-104171944:-|nuORF REV__ENST00000557439.5_1_14:104171572-104171944:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8752136230469 3 378.874459 1133.60155 1.4916 0.00056513 -0.73722 -0.00027931 0.75439 0.00028582 378.8742826802249 36.909 0.46863 32.626 32.388 32.857 -4.2835 63 28 3 0 0 0 0.18636 2 21538 21538;21662 20.871 0 1 19146000 + 50090 28790 33894 34663 58278;58279 58278 0.04009180728121464 QPCHVIYTDY 10 Carbamidomethyl (C) _QPC(Carbamidomethyl (C))HVIYTDY_ QPC(1)HVIYTDY QPC(96)HVIYTDY 0 1 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.2899780273438 2 648.289888 1294.56522 0.61588 0.00039927 -0.29815 -0.00019329 0.31773 0.00020598 648.2898717867132 43.549 0.58609 38.784 38.493 39.079 -4.7648 148 38 5 0 0 0 0.0058182 3 26307 26307;26447;26574 96.111 65.474 1 299870000 50091 640 33895 34664 58280;58281;58282 58280 44 -0.07027740959279072 QPCSLSGLNRN 11 Unmodified _QPCSLSGLNRN_ 0 0 0 REV__ENST00000484115.5_1_3:49043105-49043375:+|nuORF REV__ENST00000484115.5_1_3:49043105-49043375:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8642578125 3 396.864511 1187.5717 -0.47816 -0.00018977 0.67927 0.00026958 0.20111 7.9814E-05 396.86491447227166 20.447 0.13448 20.447 20.396 20.531 0 29 24 2 0 0 0 0.6889 1 10294 10294 2.4348 0 1 1500600 + 50092 27514 33896 34665 58283 58283 -0.0145780300788374 QPDEKSIITY 10 Unmodified _QPDEKSIITY_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant;ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 nc|ENSG00000178209|Q15149|PLEC;ENSG00000173898|ENST00000533211|SPTBN2 nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3060302734375 2 597.306061 1192.59757 -0.51891 -0.00030995 0.30646 0.00018305 -0.21245 -0.0001269 597.3063212514655 41.063 0.78241 41.063 40.639 41.422 0 214 58 5 0 0 0 0.52888 1 22000 22000 14.838 1.7958 1 393470000 50093 16412;8374 33897 34666 58284 58284 0.008973697153805915 QPDGVTLEY 9 Unmodified _QPDGVTLEY_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;ENST00000607814.5_1_20:44520477-44520965:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2454833984375 2 511.245472 1020.47639 0.70316 0.00035949 -1.8091 -0.0009249 -1.106 -0.00056541 511.24420937536837 49.626 0.28667 49.626 49.487 49.773 0 20 12 2 0 0 0 0.32871 1 27310 27310 15.847 0 1 3921100 50094 878 33898 34667 58285 58285 -0.03302832927295185 QPDIMLAWRN 10 Unmodified _QPDIMLAWRN_ 0 0 0 REV__ENSG00000183914|ENST00000572933|DNAH2 REV__ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2133178710938 3 415.213252 1242.61793 0.32202 0.00013371 -0.34913 -0.00014496 -0.02711 -1.1257E-05 415.21328962533784 42.639 0.21378 42.63 42.491 42.705 -0.0088196 28 9 4 0 0 0 0.63399 1 22795 22795 5.4027 1.8157 1 20863000 + 50095 23387 33899 34668 58286 58286 0.006322618942022018 QPDLPCVP 8 Unmodified _QPDLPCVP_ 0 0 0 ENST00000514984.1_1_4:1243983-1244804:+|nuORF;ENST00000578730.1_1_4:1243983-1244322:+|nuORF ENST00000514984.1_1_4:1243983-1244804:+|nuORF ENST00000514984.1_1_4:1243983-1244804:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 2 434.715296 867.416039 0.031124 1.353E-05 -1.8622 -0.00080952 -1.8311 -0.00079599 434.71426627724765 43.435 0.16299 43.435 43.323 43.486 0 11 7 2 0 0 0 8.7369 1 23561 23561 4.756 0.81161 1 2138500 50096 14663 33900 34669 58287 58287 -0.02297221791377524 QPDLRRIVEL 10 Unmodified _QPDLRRIVEL_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5796813964844 3 413.5787 1237.71427 0.2972 0.00012292 0.54709 0.00022626 0.84429 0.00034918 413.5789052219968 58.952 0.35392 58.461 58.29 58.644 -0.49079 45 16 4 0 0 0 0.60478 2 32021 32021;32128 10.899 3.4219 1 4307400 50097 635 33901 34670 58288;58289 58288 0.10492152725805681 QPDLRRIVEL 10 Unmodified _QPDLRRIVEL_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000536072.6_1_16:67909906-67914140:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.5787 1237.71427 0.45473 0.00018807 0.27225 0.0001126 0.72697 0.00030066 413.57875331475174 58.494 0.21356 58.433 58.333 58.546 -0.060719 -0.013778 -0.00024248 NaN 10.899 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2050900 50098 635 33901 34670 0.10492152725805681 QPDNIVYVM 9 Oxidation (M) _QPDNIVYVM(Oxidation (M))_ QPDNIVYVM(1) QPDNIVYVM(78) 0 0 1 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.762939453125 2 547.762975 1093.5114 -0.14505 -7.9453E-05 1.4552 0.00079711 1.3102 0.00071766 547.7637452002346 45.011 0.38226 45.011 44.847 45.23 0 59 19 4 0 0 0 0.010818 2 24464 24464;24570 78.149 52.312 1 60800000 50099 1883 33902 34671 58290;58291 58290 313 -0.031619133909771335 QPDNIVYVM 9 Unmodified _QPDNIVYVM_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7667846679688 2 539.765517 1077.51648 0.25792 0.00013922 0.84524 0.00045623 1.1032 0.00059545 539.7658470219279 63.553 0.22944 63.553 63.456 63.685 0 19 11 2 0 0 0 0.070838 1 35484 35484 39.957 22.844 1 1327800 50100 1883 33902 34672 58292 58292 -0.019176095283455652 QPDNIVYVM 9 Unmodified _QPDNIVYVM_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.764892578125 2 539.765517 1077.51648 0.92246 0.00049791 -1.2486 -0.00067394 -0.32613 -0.00017603 539.7649729757646 70.841 0.39798 64.665 64.461 64.859 -6.1757 35 20 3 0 0 0 0.020973 2 46255 46255;46383 62.573 44.426 1 27257000 50101 1883 33902 34672 58293;58294 58293 -0.019176095283455652 QPDNIVYVM 9 Unmodified _QPDNIVYVM_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.765517 1077.51648 0.44819 0.00024192 -1.1193 -0.00060415 -0.67108 -0.00036223 539.765014946819 64.068 0.24535 63.583 63.473 63.718 -0.48512 0.015112 -0.0011784 NaN 39.957 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 885630 50102 1883 33902 34672 -0.019176095283455652 QPDPESVVL 9 Unmodified _QPDPESVVL_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2562255859375 2 492.25584 982.497126 0.81012 0.00039879 -0.056582 -2.7853E-05 0.75354 0.00037093 492.255945796411 54.306 0.50196 54.306 54.051 54.553 0 60 22 3 0 0 0 0.0088174 2 30167 30051;30167 103.75 55.402 1 18185000 50103 2508 33903 34673 58295;58296 58296 0.005177574523941075 QPDPESVVL 9 Unmodified _QPDPESVVL_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 983.5068359375 1 983.504403 982.497126 0.71783 0.00070599 0.28398 0.00027929 1.0018 0.00098529 983.5049626740163 54.306 0.31102 54.306 54.173 54.484 0 29 13 3 0 0 0 0.05447 1 30115 30115 43.858 7.8141 1 1720500 50104 2508 33903 34673 58297 58297 0.005177574523941075 QPDPESVVL 9 Unmodified _QPDPESVVL_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2551879882812 2 492.25584 982.497126 0.59559 0.00029318 -2.4808 -0.0012212 -1.8852 -0.00092802 492.25414304132244 62.271 0.30518 56.095 55.905 56.21 -6.1757 29 17 2 0 0 0 0.013041 1 40104 40104 71.922 39.617 1 39226000 50105 2508 33903 34673 58298 58298 0.005177574523941075 QPDQGKIFY 9 Unmodified _QPDQGKIFY_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2781982421875 2 548.277106 1094.53966 0.54445 0.00029851 0.79448 0.00043559 1.3389 0.0007341 548.2769032496093 39.022 0.46716 39.022 38.834 39.302 0 55 21 3 0 0 0 0.41742 2 20853 20853;20961 11.64 2.2929 1 17737000 50106 4835 33904 34674 58299;58300 58299 -0.0038284741938241496 QPDQIANGFF 10 Unmodified _QPDQIANGFF_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7717895507812 2 568.772188 1135.52982 0.73565 0.00041842 0.0070543 4.0123E-06 0.74271 0.00042243 568.7720793103523 49.293 0.34349 48.921 48.734 49.078 -0.37172 51 16 4 0 0 0 0.50944 1 26560 26560 15.847 1.0089 1 29966000 50107 3357 33905 34675 58301 58301 -0.03252035424770838 QPDQTRIVAL 10 Unmodified _QPDQTRIVAL_ 0 0 0 ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8223876953125 2 570.822212 1139.62987 0.21306 0.00012162 -0.47563 -0.0002715 -0.26257 -0.00014988 570.8220358767253 45.488 0.6102 45.488 45.075 45.685 0 89 32 4 0 0 0 0.1989 2 24721 24721;24832 45.74 9.2337 1 301100000 50108 2287 33906 34676 58302;58303 58302 0.06564201909031908 QPDQTRIVAL 10 Unmodified _QPDQTRIVAL_ 0 0 0 ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8219604492188 2 570.822212 1139.62987 NaN NaN NaN NaN NaN NaN NaN 45.747 1 45.423 44.923 45.923 -0.32425 0 0 0 0.54704 1 24456 24456 27.223 3.4335 1 50109 2287 33906 34676 58304 58304 0.06564201909031908 QPDQTRIVAL 10 Unmodified _QPDQTRIVAL_ 0 0 0 ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL ENSG00000105202|ENST00000221801|FBL MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8225708007812 2 570.822212 1139.62987 1.134 0.00064734 -0.40441 -0.00023085 0.72963 0.00041649 570.8219760582642 50.958 0.59639 45.309 45.026 45.622 -5.649 123 36 4 0 0 0 0.10078 3 31932 31932;32065;32191 53.404 9.4597 1 671700000 50110 2287 33906 34676 58305;58306;58307 58305 0.06564201909031908 QPDQVTAVRVY 11 Unmodified _QPDQVTAVRVY_ 0 0 0 ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENST00000483946.1_1_3:113252030-113286558:+|nuORF;ENST00000491730.5_1_3:113251655-113300327:+|nuORF ENSG00000072858|ENST00000264852|SIDT1 ENSG00000072858|ENST00000264852|SIDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.3377685546875 2 638.338227 1274.6619 -0.16797 -0.00010722 -0.51857 -0.00033102 -0.68654 -0.00043824 638.3381732189774 40.338 0.23641 40.338 40.214 40.451 0 21 11 3 0 0 0 0.16638 1 21662 21662 42.312 27.064 1 3015600 50111 1095 33907 34677 58308 58308 0.03555569592185748 QPDQVTAVRVY 11 Unmodified _QPDQVTAVRVY_ 0 0 0 ENSG00000072858|ENST00000264852|SIDT1;nc|ENSG00000072858|Q9NXL6-2|SIDT1;ENST00000483946.1_1_3:113252030-113286558:+|nuORF;ENST00000491730.5_1_3:113251655-113300327:+|nuORF ENSG00000072858|ENST00000264852|SIDT1 ENSG00000072858|ENST00000264852|SIDT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.3384399414062 2 638.338227 1274.6619 0.46403 0.00029621 0.090602 5.7834E-05 0.55463 0.00035404 638.3382414233445 46.018 0.29989 41.063 40.908 41.208 -4.9549 32 19 2 0 0 0 0.041516 1 28306 28306 70.929 30.689 1 9918500 50112 1095 33907 34677 58309 58309 0.03555569592185748 QPDRQLQQ 8 Unmodified _QPDRQLQQ_ 0 0 0 REV__ENSG00000275793|ENST00000619918|RIMBP3 REV__ENSG00000275793|ENST00000619918|RIMBP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7628479003906 2 506.762155 1011.50976 NaN NaN NaN NaN NaN NaN NaN 20.406 1 20.406 19.906 20.906 0 0 0 0 0.90769 1 10265 10265 18.135 0 1 + 50113 23330 33908 34678 58310 58310 0.004462136352913149 QPDVLWGHY 9 Unmodified _QPDVLWGHY_ 0 0 0 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1114.516479492188 1 1114.53162 1113.52434 -0.42623 -0.00047505 -1.527 -0.0017019 -1.9532 -0.0021769 1114.5293054538406 81.848 0.72121 81.848 81.593 82.314 0 100 39 4 0 0 0 0.56345 1 45637 45637 3.5965 0.70727 1 23454000 + 50114 20636 33909 34679 58311 58311 -0.027877142165834812 QPDVLWGHY 9 Unmodified _QPDVLWGHY_ 0 0 0 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1114.53162 1113.52434 0.47337 0.00052758 -1.3179 -0.0014688 -0.8445 -0.00094122 1114.5300366324318 82.404 0.2901 81.909 81.742 82.032 -0.4952 0.030159 0.00010757 NaN 3.5965 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5554100 + 50115 20636 33909 34679 -0.027877142165834812 QPDVVVVEL 9 Unmodified _QPDVVVVEL_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2821350097656 2 499.281857 996.549162 0.50581 0.00025254 0.023148 1.1557E-05 0.52896 0.0002641 499.2818396411844 72.727 0.51858 72.727 72.487 73.005 0 62 24 3 0 0 0 0.015445 1 40506 40506 68.081 30.107 1 2550300 50116 8011 33910 34680 58312 58312 0.050749208661500234 QPDWIAICY 9 Carbamidomethyl (C) _QPDWIAIC(Carbamidomethyl (C))Y_ QPDWIAIC(1)Y QPDWIAIC(59)Y 0 1 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2718505859375 2 583.270967 1164.52738 1.0835 0.00063199 -0.85232 -0.00049714 0.2312 0.00013486 583.2705455142386 86.125 0.89969 79.949 79.479 80.379 -6.1757 101 49 3 0 0 0 0.024882 2 56999 56862;56999 58.679 45.353 1 38038000 50117 4825 33911 34681 58313;58314 58314 492 -0.04830207154100208 QPEEGLRLLY 10 Unmodified _QPEEGLRLLY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158424360-158447416:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3307495117188 2 609.32987 1216.64519 0.21585 0.00013152 1.2623 0.00076915 1.4781 0.00090067 609.330589406263 61.184 0.34537 61.184 60.975 61.321 0 42 14 4 0 0 0 0.24975 2 34141 34047;34141 41.956 27.117 1 2400000 50118 5809 33912 34682 58315;58316 58316 0.045530687062409925 QPEEGLRLLY 10 Unmodified _QPEEGLRLLY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158424360-158447416:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3291015625 2 609.32987 1216.64519 0.059916 3.6508E-05 0.098792 6.0197E-05 0.15871 9.6705E-05 609.3294981547093 61.588 0.27792 61.1 60.944 61.222 -0.48764 29 12 3 0 0 0 0.093652 1 33520 33520 55.503 36.141 1 4056400 50119 5809 33912 34682 58317 58317 0.045530687062409925 QPEEGLRLLY 10 Unmodified _QPEEGLRLLY_ 0 0 0 ENST00000467785.5_1_7:158424360-158447992:-|nuORF;ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158424360-158447416:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF ENST00000467785.5_1_7:158424360-158447992:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 609.7671508789062 2 609.32987 1216.64519 0.31331 0.00019091 -1.1284 -0.00068755 -0.81506 -0.00049664 609.3293514665087 66.711 0.39763 60.535 60.332 60.73 -6.1757 32 22 2 0 0 0 0.073905 1 43359 43359 47.594 26.057 1 19712000 50120 5809 33912 34682 58318 58318 0.045530687062409925 QPEIALRFY 9 Unmodified _QPEIALRFY_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8070068359375 2 568.808574 1135.60259 0.44455 0.00025286 -1.2815 -0.00072894 -0.83697 -0.00047608 568.8072848709951 66.848 0.28912 66.365 66.235 66.524 -0.48323 17 13 2 0 0 0 0.40476 1 36526 36526 12.241 6.0349 1 870030 50121 7358 33913 34683 58319 58319 0.04021718368676375 QPEIALRFY 9 Unmodified _QPEIALRFY_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.808574 1135.60259 1.1717 0.00066645 0.0055284 3.1446E-06 1.1772 0.0006696 568.808076713631 66.357 0.19869 66.367 66.26 66.459 0.0095596 0.00092135 0.00067521 NaN 12.241 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1447500 50122 7358 33913 34683 0.04021718368676375 QPEKQKQF 8 Unmodified _QPEKQKQF_ 0 0 0 ENSG00000164609|ENST00000297151|SLU7;ENST00000521190.5_1_5:159840839-159846079:-|nuORF ENSG00000164609|ENST00000297151|SLU7 ENSG00000164609|ENST00000297151|SLU7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7850341796875 2 516.777274 1031.53999 0.59667 0.00030834 0.28457 0.00014706 0.88124 0.0004554 516.7770534155587 36.586 0.76862 32.302 32.028 32.796 -4.2835 112 47 4 0 0 0 0.50673 1 21268 21268 34.102 1.3168 1 128590000 50123 7213 33914 34684 58320 58320 0.02548572300474916 QPESLCIVEM 10 Carbamidomethyl (C) _QPESLC(Carbamidomethyl (C))IVEM_ QPESLC(1)IVEM QPESLC(52)IVEM 0 1 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20221201_MKP_PDAC_01 4 603.2806396484375 2 603.280674 1204.5468 NaN NaN NaN NaN NaN NaN NaN 74.695 1 68.519 68.019 69.019 -6.1757 0 0 0 0.095408 1 48835 48835 51.63 15.124 1 50124 9729 33915 34685 58321 58321 891 -0.04729618925489376 QPFDVGPRY 9 Unmodified _QPFDVGPRY_ 0 0 0 nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7693481445312 2 539.769448 1077.52434 -0.10599 -5.7211E-05 1.2771 0.00068934 1.1711 0.00063213 539.7702346360089 43.795 0.15416 43.484 43.426 43.58 -0.31039 11 7 2 0 0 0 0.0038489 1 23319 23319 122.18 69.911 1 13957000 50125 2073 33916 34686 58322 58322 -0.011317142165808036 QPFDVGPRY 9 Unmodified _QPFDVGPRY_ 0 0 0 nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7699584960938 2 539.769448 1077.52434 0.78891 0.00042583 -0.23942 -0.00012923 0.54949 0.0002966 539.769301510109 49.325 0.31901 43.929 43.795 44.114 -5.3961 33 19 2 0 0 0 0.010611 2 30761 30761;30831 78.728 51.844 1 36074000 50126 2073 33916 34686 58323;58324 58323 -0.011317142165808036 QPFFQKRSEL 10 Unmodified _QPFFQKRSEL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2304992675781 3 427.2313 1278.67207 -0.48377 -0.00020668 -0.30585 -0.00013067 -0.78962 -0.00033735 427.2311587483182 36.026 0.25093 35.804 35.642 35.893 -0.2224 24 11 3 0 0 0 0.10406 1 18867 18867 46.475 36.711 1 10510000 50127 3426 33917 34687 58325 58325 0.043881773174234695 QPFFQKRSEL 10 Unmodified _QPFFQKRSEL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2311096191406 3 427.2313 1278.67207 -0.036992 -1.5804E-05 -0.34255 -0.00014635 -0.37954 -0.00016215 427.231014381365 35.685 0.2479 35.71 35.558 35.806 0.024971 28 11 3 0 0 0 0.087164 1 18848 18848 43.477 29.958 1 10639000 50128 3426 33917 34687 58326 58326 0.043881773174234695 QPFFQKRSEL 10 Unmodified _QPFFQKRSEL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5660400390625 3 427.2313 1278.67207 0.59604 0.00025465 0.33467 0.00014298 0.93071 0.00039763 427.2313831189983 39.764 0.34151 35.26 35.07 35.412 -4.5032 61 21 4 0 0 0 0.0032515 2 23712 23571;23712 99.864 61.249 1 47252000 50129 3426 33917 34687 58327;58328 58328 0.043881773174234695 QPFFQKRSEL 10 Unmodified _QPFFQKRSEL_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENSG00000230667|ENST00000596516|SETSIP;nc|ENSG00000230667|P0DME0-1|SETSIP nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MSMS AL20221201_MKP_PDAC_01 4 640.3436279296875 2 640.343312 1278.67207 NaN NaN NaN NaN NaN NaN NaN 39.793 1 35.264 34.764 35.764 -4.5294 0 0 0 0.098035 1 23670 23670 51.415 20.147 1 50130 3426 33917 34687 58329 58329 0.043881773174234695 QPFGDTGGFHF 11 Unmodified _QPFGDTGGFHF_ 0 0 0 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2703247070312 2 605.269813 1208.52507 NaN NaN NaN NaN NaN NaN NaN 65.177 1 64.692 64.192 65.192 -0.48428 0 0 0 0.54872 1 35566 35566 22.736 13.353 1 50131 10265 33918 34688 58330 58330 -0.07084919567500947 QPFGGGSHM 9 Oxidation (M) _QPFGGGSHM(Oxidation (M))_ QPFGGGSHM(1) QPFGGGSHM(44) 0 0 1 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.1981811523438 2 467.197802 932.381051 0.71963 0.00033621 0.17341 8.1016E-05 0.89304 0.00041722 467.1978861270604 18.638 0.44877 16.017 15.793 16.242 -2.6215 113 42 3 0 0 0 0.05447 1 9723 9723 43.858 28.09 1 18365000 50132 1206 33919 34689 58331 58331 201 -0.08784464599295916 QPFGGGSHM 9 Unmodified _QPFGGGSHM_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2005004882812 2 459.200344 916.386136 0.77673 0.00035667 -0.57468 -0.0002639 0.20205 9.2779E-05 459.20013543003245 28.892 0.30938 25.67 25.46 25.769 -3.2221 22 15 2 0 0 0 0.009483 2 16186 16074;16186 81.89 37.483 1 57903000 50133 1206 33919 34690 58332;58333 58333 -0.07540160736687085 QPFGGGSHM 9 Unmodified _QPFGGGSHM_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 459.200344 916.386136 0.0017468 8.0213E-07 0.27948 0.00012834 0.28123 0.00012914 459.2005145106946 25.692 0.14621 25.692 25.591 25.737 0 0.01105 0.00062648 NaN 81.89 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 440990 50134 1206 33919 34690 -0.07540160736687085 QPFGVPLSM 9 Oxidation (M) _QPFGVPLSM(Oxidation (M))_ QPFGVPLSM(1) QPFGVPLSM(69) 0 0 1 nc|ENSG00000109787|P57682-2|KLF3;ENSG00000109787|ENST00000261438|KLF3 nc|ENSG00000109787|P57682-2|KLF3 nc|ENSG00000109787|P57682-2|KLF3 MSMS AL20221201_MKP_PDAC_01 4 496.2509155273438 2 496.249503 990.484453 NaN NaN NaN NaN NaN NaN NaN 67.142 1 60.966 60.466 61.466 -6.1757 0 0 0 0.027645 1 43720 43720 69.105 7.7474 1 50135 2674 33920 34691 58334 58334 461 -0.011169772115067644 QPFHATGAESD 11 Unmodified _QPFHATGAESD_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;THUMPD2-RALGAPA1|1|fusion;THUMPD2-RALGAPA1|2|fusion;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000443361.1_1_9:108285096-108287232:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1 nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.1721801757812 3 387.171999 1158.49417 NaN NaN NaN NaN NaN NaN NaN 39.655 1 39.358 38.858 39.858 -0.29716 0 0 0 0.93767 1 20925 20925 1.9275 0 1 50136 8416 33921 34692 58335 58335 -0.07874117672440661 QPFKDLGNLRY 11 Unmodified _QPFKDLGNLRY_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9105834960938 3 450.910338 1349.70918 0.9214 0.00041547 -0.47385 -0.00021366 0.44755 0.00020181 450.91020924391654 49.268 0.36975 49.225 49.027 49.397 -0.04369 51 17 4 0 0 0 0.12206 2 26673 26564;26673 39.923 33.299 1 8559900 50137 2409 33922 34693 58336;58337 58337 0.04831848863182131 QPFKDLGNLRY 11 Unmodified _QPFKDLGNLRY_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.91064453125 3 450.910338 1349.70918 0.86565 0.00039033 0.45579 0.00020552 1.3214 0.00059585 451.24508272445865 54.629 0.30247 48.764 48.656 48.959 -5.8653 24 18 2 0 0 0 0.074411 1 34669 34669 45.603 33.971 1 19287000 50138 2409 33922 34693 58338 58338 0.04831848863182131 QPFKDLGNLRY 11 Unmodified _QPFKDLGNLRY_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 450.910338 1349.70918 0.68842 0.00031042 -0.012258 -5.5271E-06 0.67616 0.00030489 450.9103139133862 49.6 0.17704 49.208 49.119 49.296 -0.3923 -0.0083447 0.00053035 NaN 39.923 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1747400 50139 2409 33922 34693 0.04831848863182131 QPFKGWALY 9 Unmodified _QPFKGWALY_ 0 0 0 ENSG00000116096|ENST00000234454|SPR ENSG00000116096|ENST00000234454|SPR ENSG00000116096|ENST00000234454|SPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.293212890625 2 555.292559 1108.57057 1.1281 0.00062642 -0.34617 -0.00019222 0.78193 0.0004342 555.2924631854779 66.045 0.3484 66.055 65.835 66.183 0.0095596 49 17 4 0 0 0 0.39863 1 36222 36222 12.532 4.6214 1 26829000 50140 3190 33923 34694 58339 58339 0.020623506855145024 QPFLDKSGL 9 Unmodified _QPFLDKSGL_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7742919921875 2 502.7742 1003.53385 0.61304 0.00030822 0.35942 0.00018071 0.97246 0.00048893 502.774392223508 46.628 0.3381 46.628 46.501 46.839 0 25 15 2 0 0 0 0.18144 1 25508 25508 24.991 4.5373 1 1807900 50141 3678 33924 34695 58340 58340 0.03222054068965008 QPFLEVTKEAF 11 Unmodified _QPFLEVTKEAF_ 0 0 0 ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR ENST00000585164.2_1_17:79994733-79995558:-|nuORF ENST00000585164.2_1_17:79994733-79995558:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 654.8461303710938 2 654.845353 1307.67615 -0.037414 -2.45E-05 0.14795 9.6885E-05 0.11054 7.2384E-05 654.845430979749 65.761 0.29243 65.761 65.572 65.864 0 32 13 3 0 0 0 0.33612 1 36663 36663 24.882 15.498 1 3525100 50142 7909 33925 34696 58341 58341 0.034622220204710175 QPFLEVTKEAF 11 Unmodified _QPFLEVTKEAF_ 0 0 0 ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR ENST00000585164.2_1_17:79994733-79995558:-|nuORF ENST00000585164.2_1_17:79994733-79995558:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3469848632812 2 654.845353 1307.67615 0.11728 7.6803E-05 -0.93319 -0.00061109 -0.8159 -0.00053429 654.8445431261027 66.245 0.38235 65.762 65.563 65.946 -0.48323 55 20 3 0 0 0 0.06459 2 36113 36113;36220 47.732 24.996 1 17442000 50143 7909 33925 34696 58342;58343 58342 0.034622220204710175 QPFLEVTKEAF 11 Unmodified _QPFLEVTKEAF_ 0 0 0 ENST00000585164.2_1_17:79994733-79995558:-|nuORF;ENST00000582074.5_1_17:79994229-79994802:-|nuORF;ENST00000580750.5_1_17:79994503-79995558:-|nuORF;ENST00000578885.5_1_17:79994327-79995552:-|nuORF;ENSG00000169738|ENST00000306869|DCXR ENST00000585164.2_1_17:79994733-79995558:-|nuORF ENST00000585164.2_1_17:79994733-79995558:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 654.8473510742188 2 654.845353 1307.67615 NaN NaN NaN NaN NaN NaN NaN 75.678 1 69.502 69.002 70.002 -6.1757 0 0 0 0.26205 1 49500 49500 35.612 15.198 1 50144 7909 33925 34696 58344 58344 0.034622220204710175 QPFLTRTEVY 10 Unmodified _QPFLTRTEVY_ 0 0 0 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.329833984375 2 627.32987 1252.64519 0.56453 0.00035415 -0.1165 -7.3084E-05 0.44803 0.00028106 627.3300720172082 49.524 0.19855 49.131 49.04 49.238 -0.3923 24 9 3 0 0 0 0.17253 1 26625 26625 37.075 19.632 1 4225800 50145 9293 33926 34697 58345 58345 0.028970687062610523 QPFLTRTEVY 10 Unmodified _QPFLTRTEVY_ 0 0 0 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3307495117188 2 627.32987 1252.64519 0.95011 0.00059603 -0.63235 -0.00039669 0.31776 0.00019934 627.329561729294 55.222 0.36422 49.301 49.143 49.507 -5.9211 31 22 2 0 0 0 0.17253 1 35097 35097 37.075 15.328 1 19919000 50146 9293 33926 34697 58346 58346 0.028970687062610523 QPFPGAVPSL 10 Unmodified _QPFPGAVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7772521972656 2 506.776742 1011.53893 0.15579 7.895E-05 1.384 0.00070137 1.5398 0.00078033 506.7773700453447 71.555 0.73453 71.079 70.706 71.44 -0.47647 89 30 4 0 0 0 0.074936 3 39182 39077;39182;39289 52.268 16.224 1 6447200 50147 3859 33927 34698 58347;58348;58349 58348 0.03362357931564475 QPFPGAVPSL 10 Unmodified _QPFPGAVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7785034179688 2 506.776742 1011.53893 1.356 0.00068717 0.49868 0.00025272 1.8546 0.00093989 506.7774524294006 71.017 0.53096 71.053 70.81 71.341 0.035515 52 23 3 0 0 0 0.18021 2 39063 39063;39165 36.127 9.2434 1 3993800 50148 3859 33927 34698 58350;58351 58350 0.03362357931564475 QPFPGAVPSL 10 Unmodified _QPFPGAVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1012.547912597656 1 1012.54621 1011.53893 0.38285 0.00038765 3.8081 0.0038559 4.191 0.0042436 1012.550321862805 78.831 0.38107 72.656 72.468 72.849 -6.1757 26 21 2 0 0 0 0.038363 1 51674 51674 63.961 29.559 1 7661300 50149 3859 33927 34698 58352 58352 0.03362357931564475 QPFPGAVPSL 10 Unmodified _QPFPGAVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.77685546875 2 506.776742 1011.53893 0.58271 0.0002953 0.76196 0.00038614 1.3447 0.00068145 506.7771227338803 78.828 0.61944 72.652 72.437 73.056 -6.1757 62 35 2 0 0 0 0.11755 1 51691 51691 43.858 19.838 1 44349000 50150 3859 33927 34698 58353 58353 0.03362357931564475 QPFPGAVPSL 10 Unmodified _QPFPGAVPSL_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.776742 1011.53893 1.356 0.00068717 0.49868 0.00025272 1.8546 0.00093989 506.7774524294006 71.017 0.53096 71.053 70.81 71.341 0.035515 -0.013103 -0.00077219 NaN 52.268 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 3993800 50151 3859 33927 34698 0.03362357931564475 QPFPPHEF 8 Unmodified _QPFPPHEF_ 0 0 0 nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A nc|ENSG00000132635|Q9H1Q7-2|PCED1A nc|ENSG00000132635|Q9H1Q7-2|PCED1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7396240234375 2 499.74016 997.465767 0.22748 0.00011368 -0.90402 -0.00045178 -0.67654 -0.0003381 499.7398010629912 48.17 0.48053 48.17 48.051 48.531 0 37 23 3 0 0 0 0.74163 1 26413 26413 13.508 0.97634 1 3723200 50152 4429 33928 34699 58354 58354 -0.033067707910504396 QPFQQQHAL 9 Unmodified _QPFQQQHAL_ 0 0 0 nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF nc|ENSG00000157212|Q6ZW49-1|PAXIP1 nc|ENSG00000157212|Q6ZW49-1|PAXIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.780517578125 2 548.780348 1095.54614 -0.0025735 -1.4123E-06 -0.28079 -0.00015409 -0.28337 -0.00015551 548.7800606907014 30.963 0.28019 30.963 30.852 31.132 0 18 13 2 0 0 0 0.30562 1 16125 16125 16.942 1.0951 1 2944800 50153 13608 33929 34700 58355 58355 0.002190905319821468 QPFQQQHAL 9 Unmodified _QPFQQQHAL_ 0 0 0 nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF nc|ENSG00000157212|Q6ZW49-1|PAXIP1 nc|ENSG00000157212|Q6ZW49-1|PAXIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7804565429688 2 548.780348 1095.54614 0.88905 0.0004879 -1.0592 -0.00058127 -0.17015 -9.3376E-05 548.7799521797685 34.819 0.31656 30.723 30.581 30.898 -4.0951 28 18 2 0 0 0 0.070838 1 20104 20104 39.957 14.558 1 7654500 50154 13608 33929 34700 58356 58356 0.002190905319821468 QPFQVAEVF 9 Unmodified _QPFQVAEVF_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7753295898438 2 532.7742 1063.53385 0.31705 0.00016892 -1.8779 -0.0010005 -1.5608 -0.00083157 532.7732037834871 78.349 0.48975 78.349 78.127 78.617 0 42 22 3 0 0 0 0.070838 1 43494 43494 39.957 7.6518 1 2101800 50155 2756 33930 34701 58357 58357 0.004620540689529662 QPFQVAEVF 9 Unmodified _QPFQVAEVF_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7744750976562 2 532.7742 1063.53385 0.097766 5.2087E-05 -1.9251 -0.0010256 -1.8273 -0.00097356 532.7733692633651 78.823 0.44165 78.337 78.111 78.553 -0.48596 43 17 4 0 0 0 0.026094 2 43119 43119;43228 57.471 17.514 1 8711000 50156 2756 33930 34701 58358;58359 58358 0.004620540689529662 QPFQVAEVF 9 Unmodified _QPFQVAEVF_ 0 0 0 ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B ENSG00000110955|ENST00000262030|ATP5F1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7743530273438 2 532.7742 1063.53385 1.0914 0.00058149 -1.9983 -0.0010647 -0.9069 -0.00048317 532.773628790324 86.106 0.40914 79.931 79.709 80.118 -6.1757 53 22 3 0 0 0 0.042911 2 56669 56669;56800 48.346 8.3885 1 28509000 50157 2756 33930 34701 58360;58361 58360 0.004620540689529662 QPFQVILRY 9 Unmodified _QPFQVILRY_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3327026367188 2 582.332216 1162.64988 1.0806 0.00062929 -0.2424 -0.00014116 0.83823 0.00048813 582.3320392597303 68.615 0.46396 68.64 68.416 68.88 0.025146 66 21 4 0 0 0 0.015688 3 37704 37607;37704;37806 85.272 78.149 1 55571000 50158 5409 33931 34702 58362;58363;58364 58363 0.07505997639646012 QPFREAIAL 9 Unmodified _QPFREAIAL_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7966918945312 2 522.795466 1043.57638 0.88115 0.00046066 -0.92849 -0.00048541 -0.047332 -2.4745E-05 522.7950839057205 54.775 0.34389 54.775 54.553 54.897 0 34 14 3 0 0 0 0.023481 1 30367 30367 60.074 11.728 1 20189000 50159 9091 33932 34703 58365 58365 0.05633449197171103 QPFREAIAL 9 Unmodified _QPFREAIAL_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7957763671875 2 522.795466 1043.57638 0.24146 0.00012623 -0.24306 -0.00012707 -0.0015983 -8.3561E-07 522.7956752797638 55.238 0.60475 54.76 54.548 55.152 -0.47798 154 28 7 0 0 0 0.023481 2 29973 29874;29973 60.074 11.728 1 114300000 50160 9091 33932 34703 58366;58367 58367 0.05633449197171103 QPFREAIAL 9 Unmodified _QPFREAIAL_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7960815429688 2 522.795466 1043.57638 0.30247 0.00015813 0.37244 0.00019471 0.67491 0.00035284 522.7954959686783 54.88 0.23761 54.811 54.681 54.919 -0.068737 27 11 3 0 0 0 0.028475 1 29804 29804 56.177 7.8312 1 4465100 50161 9091 33932 34703 58368 58368 0.05633449197171103 QPFREAIAL 9 Unmodified _QPFREAIAL_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7959594726562 2 522.795466 1043.57638 1.1974 0.00062598 -0.12754 -6.6675E-05 1.0698 0.0005593 522.7953504321442 60.692 0.91262 54.544 54.142 55.055 -6.1478 134 48 4 0 0 0 0.023481 3 39161 39037;39161;39288 60.074 11.728 1 345010000 50162 9091 33932 34703 58369;58370;58371 58370 0.05633449197171103 QPFRLGERSF 10 Unmodified _QPFRLGERSF_ 0 0 0 ENSG00000106628|ENST00000610533|POLD2;ENST00000496539.1_1_7:44157490-44163110:-|nuORF;ENST00000470867.5_1_7:44156819-44163110:-|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF ENSG00000106628|ENST00000610533|POLD2 ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8887939453125 3 412.887645 1235.64111 0.29332 0.00012111 0.95957 0.00039619 1.2529 0.0005173 412.88827338609536 43.273 0.23531 43.258 43.164 43.399 -0.015667 15 10 2 0 0 0 0.24975 1 23205 23205 22.486 15.009 1 3634100 50163 2447 33933 34704 58372 58372 0.03271024003174716 QPFRLGERSF 10 Unmodified _QPFRLGERSF_ 0 0 0 ENSG00000106628|ENST00000610533|POLD2;ENST00000496539.1_1_7:44157490-44163110:-|nuORF;ENST00000470867.5_1_7:44156819-44163110:-|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF ENSG00000106628|ENST00000610533|POLD2 ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8873596191406 3 412.887645 1235.64111 0.81795 0.00033772 0.29631 0.00012234 1.1143 0.00046006 412.8877932743709 48.146 0.24435 42.912 42.808 43.053 -5.2339 21 14 2 0 0 0 0.1887 1 29946 29946 31.446 18.404 1 7490300 50164 2447 33933 34704 58373 58373 0.03271024003174716 QPFRSQVY 8 Unmodified _QPFRSQVY_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2661743164062 2 512.764166 1023.51378 0.082502 4.2304E-05 1.0997 0.00056386 1.1822 0.00060617 512.7646821983064 31.474 0.24252 31.371 31.238 31.481 -0.10269 23 9 4 0 0 0 0.1875 1 16347 16347 74.929 31.071 1 9149600 50165 16627 33934 34705 58374 58374 0.0029630312900508216 QPFRSQVYM 9 Unmodified _QPFRSQVYM_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MSMS AL20221201_MKP_PDAC_01 4 578.2850952148438 2 578.284408 1154.55426 NaN NaN NaN NaN NaN NaN NaN 46.199 1 41.244 40.744 41.744 -4.9549 0 0 0 0.6557 1 28491 28491 10.824 1.4765 1 50166 16627 33935 34706 58375 58375 -0.016830985428896383 QPFSLQETY 9 Unmodified _QPFSLQETY_ 0 0 0 nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8 nc|ENSG00000164402|Q92599-3|SEPTIN8 nc|ENSG00000164402|Q92599-3|SEPTIN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7665405273438 2 556.766571 1111.51859 0.82682 0.00046035 -0.8737 -0.00048645 -0.046879 -2.61E-05 556.7662833176116 57.241 0.28707 57.241 57.156 57.443 0 19 12 2 0 0 0 0.07916 1 31859 31859 37.974 17.52 1 2416700 50167 7190 33936 34707 58376 58376 -0.03270857518873527 QPFTHFLAF 9 Unmodified _QPFTHFLAF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.285888671875 2 554.284734 1106.55492 1.2593 0.000698 1.0885 0.00060333 2.3478 0.0013013 554.2852858667438 97.883 0.19989 91.708 91.6 91.8 -6.1757 21 12 2 0 0 0 0.39863 1 64883 64883 12.532 2.4576 1 50886000 50168 5038 33937 34708 58377 58377 0.005900641684547736 QPFVDHVF 8 Unmodified _QPFVDHVF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7484741210938 2 494.747985 987.481417 NaN NaN NaN NaN NaN NaN NaN 55.312 1 55.312 54.812 55.812 0 0 0 0 0.93066 1 30724 30724 14.582 8.2276 1 50169 2970 33938 34709 58378 58378 -0.012824842739973974 QPFVDHVF 8 Unmodified _QPFVDHVF_ 0 0 0 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 ENSG00000113460|ENST00000336767|BRIX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7479248046875 2 494.747985 987.481417 0.14882 7.3626E-05 0.043755 2.1648E-05 0.19257 9.5274E-05 494.7480249317878 55.825 0.24777 55.347 55.192 55.44 -0.47798 19 11 2 0 0 0 0.5953 1 30313 30313 26.341 12.833 1 2311200 50170 2970 33938 34709 58379 58379 -0.012824842739973974 QPFWLTLHF 9 Unmodified _QPFWLTLHF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8171997070312 2 594.813659 1187.61277 4.1054 0.0024419 0.39079 0.00023245 4.4962 0.0026744 594.8138074154444 98.965 0.19513 98.937 98.833 99.028 -0.028282 21 6 5 0 0 0 0.023481 1 54967 54967 67.344 44.608 1 43759000 50171 10212 33939 34710 58380 58380 0.02646326093895368 QPFYHDDSY 9 Unmodified _QPFYHDDSY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2373046875 2 586.238178 1170.4618 -0.93774 -0.00054974 -0.093692 -5.4926E-05 -1.0314 -0.00060466 586.2380516770567 32.8 0.42956 32.8 32.639 33.068 0 85 21 6 0 0 0 0.06187 2 17105 17105;17208 42.095 26.247 1 418490000 50172 8081 33940 34711 58381;58382 58381 -0.11660905075427763 QPFYHDDSY 9 Unmodified _QPFYHDDSY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.23828125 2 586.238178 1170.4618 -0.33276 -0.00019508 0.76563 0.00044884 0.43287 0.00025377 586.2383458890893 32.894 0.29176 32.735 32.596 32.888 -0.15919 26 11 3 0 0 0 0.095405 1 17132 17132 34.102 10.082 1 5697300 50173 8081 33940 34711 58383 58383 -0.11660905075427763 QPFYHDDSY 9 Unmodified _QPFYHDDSY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.7406616210938 2 586.238178 1170.4618 0.17334 0.00010162 -0.82564 -0.00048402 -0.65229 -0.0003824 586.2373596740823 32.764 0.24139 32.793 32.672 32.914 0.029743 20 10 3 0 0 0 0.013323 1 17205 17205 71.134 40.497 1 7405900 50174 8081 33940 34711 58384 58384 -0.11660905075427763 QPFYHDDSY 9 Unmodified _QPFYHDDSY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.23828125 2 586.238178 1170.4618 1.1606 0.00068038 -0.67785 -0.00039738 0.48273 0.000283 586.2377117211406 37.534 0.59628 33.251 32.991 33.587 -4.2835 127 35 5 0 0 0 0.008678 3 21906 21906;22029;22154 88.904 58.267 1 410260000 50175 8081 33940 34711 58385;58386;58387 58385 -0.11660905075427763 QPGAERNLLYE 11 Unmodified _QPGAERNLLYE_ 0 0 0 nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.3272094726562 2 645.327859 1288.64116 NaN NaN NaN NaN NaN NaN NaN 27.486 1 27.44 26.94 27.94 -0.046408 0 0 0 0.88164 1 14167 14167 8.1555 0 1 50176 1139 33941 34712 58388 58388 0.008389792125399254 QPGCVRTSVF 10 Unmodified _QPGCVRTSVF_ 0 0 0 REV__ENST00000520161.5_1_8:30242782-30242878:+|nuORF REV__ENST00000520161.5_1_8:30242782-30242878:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.252685546875 2 547.276583 1092.53861 -0.58948 -0.00032261 -1.1132 -0.00060925 -1.7027 -0.00093186 547.2760062620739 30.399 0.36505 30.399 30.285 30.65 0 21 17 2 0 0 0 0.22316 1 15793 15793 20.415 1.1575 1 1378900 + 50177 28273 33942 34713 58389 58389 -0.003953850599373254 QPGCVRTSVF 10 Unmodified _QPGCVRTSVF_ 0 0 0 REV__ENST00000520161.5_1_8:30242782-30242878:+|nuORF REV__ENST00000520161.5_1_8:30242782-30242878:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.276583 1092.53861 0.4523 0.00024753 -1.6983 -0.00092942 -1.246 -0.00068189 547.2756745430952 30.403 0.3134 30.323 30.232 30.546 -0.080431 -0.038194 -0.00015757 NaN 20.415 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2391800 + 50178 28273 33942 34713 -0.003953850599373254 QPGCYSTAWL 10 Unmodified _QPGCYSTAWL_ 0 0 0 REV__nc|ENSG00000182698|Q5W5W9-3|RESP18 REV__nc|ENSG00000182698|Q5W5W9-3|RESP18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.289794921875 2 563.255317 1124.49608 0.4369 0.00024608 0.60576 0.0003412 1.0427 0.00058728 563.2551388060753 65.501 0.43668 59.325 59.089 59.525 -6.1757 41 24 2 0 0 0 0.23634 1 42606 42606 6.7232 0 1 14784000 + 50179 23290 33943 34714 58390 58390 -0.061187801881942505 QPGEQKYEY 9 Unmodified _QPGEQKYEY_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.26220703125 2 571.261653 1140.50875 -0.06291 -3.5938E-05 0.91129 0.00052059 0.84838 0.00048465 571.2621180981815 22.427 0.32623 22.427 22.264 22.59 0 37 15 3 0 0 0 0.36964 1 11445 11445 13.906 5.1606 1 2799300 50180 3070;16132 33944 34715 58391 58391 -0.05588045524291374 QPGEQKYEY 9 Unmodified _QPGEQKYEY_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MSMS AL20221201_MKP_PDAC_01 4 571.2612915039062 2 571.261653 1140.50875 NaN NaN NaN NaN NaN NaN NaN 24.841 1 21.958 21.458 22.458 -2.8831 0 0 0 0.10759 1 13551 13551 41.84 14.211 1 50181 3070;16132 33944 34715 58392 58392 -0.05588045524291374 QPGSFEYEY 9 Unmodified _QPGSFEYEY_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2351684570312 2 560.235104 1118.45566 0.41383 0.00023184 -0.3553 -0.00019905 0.058524 3.2787E-05 560.2348616177835 48.119 0.56381 48.119 47.831 48.394 0 100 27 5 0 0 0 0.070838 2 26384 26275;26384 39.957 25.119 1 125550000 50182 5827 33945 34716 58393;58394 58394 -0.09883423306951045 QPGSFEYEY 9 Unmodified _QPGSFEYEY_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2352294921875 2 560.235104 1118.45566 0.56461 0.00031632 -0.63794 -0.00035739 -0.073323 -4.1078E-05 560.2346696417543 48.565 0.29467 48.194 47.983 48.278 -0.37172 24 14 2 0 0 0 0.43463 1 26027 26027 10.824 0 1 4443400 50183 5827 33945 34716 58395 58395 -0.09883423306951045 QPGSFEYEY 9 Unmodified _QPGSFEYEY_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.235595703125 2 560.235104 1118.45566 1.3262 0.00074296 -0.26785 -0.00015006 1.0583 0.0005929 560.2349159652166 55.184 0.75057 49.263 48.888 49.638 -5.9211 146 46 4 0 0 0 0.024882 3 35102 34964;35102;35248 58.679 26.373 1 293110000 50184 5827 33945 34716 58396;58397;58398 58397 -0.09883423306951045 QPGTFEFEY 9 Unmodified _QPGTFEFEY_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2457275390625 2 559.245472 1116.47639 0.40167 0.00022463 2.1776 0.0012178 2.5793 0.0014424 559.7485934527953 65.757 0.64715 65.757 65.528 66.175 0 70 31 4 0 0 0 0.08691 1 36805 36805 36.127 16.688 1 9492300 50185 3581 33946 34717 58399 58399 -0.07718832927275798 QPGTFEFEY 9 Unmodified _QPGTFEFEY_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2463989257812 2 559.245472 1116.47639 1.1281 0.00063091 0.06034 3.3745E-05 1.1885 0.00066466 559.2456304510974 72.331 0.29949 66.156 65.959 66.259 -6.1757 24 14 2 0 0 0 0.07087 1 47269 47269 39.95 21.815 1 18722000 50186 3581 33946 34717 58400 58400 -0.07718832927275798 QPGTTILQY 9 Unmodified _QPGTTILQY_ 0 0 0 ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1 ENSG00000118260|ENST00000353267|CREB1 ENSG00000118260|ENST00000353267|CREB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7720336914062 2 510.771657 1019.52876 0.55753 0.00028477 2.8182 0.0014395 3.3757 0.0017242 510.7726997328 53.292 0.66674 53.292 52.82 53.486 0 86 30 4 0 0 0 0.039985 1 29520 29520 49.933 1.5872 1 36169000 50187 3363 33947 34718 58401 58401 0.019777502063334396 QPGVIASVAII 11 Unmodified _QPGVIASVAII_ 0 0 0 REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P REV__nc|ENSG00000268758|Q86SQ3|ADGRE4P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2630004882812 2 534.326599 1066.63865 0.60548 0.00032353 -0.58428 -0.00031219 0.021209 1.1332E-05 534.3260945966165 82.135 0.21388 81.639 81.528 81.742 -0.4952 12 8 2 0 0 0 0.30139 1 44956 44956 5.7319 1.4026 1 419150 + 50188 29997 33948 34719 58402 58402 0.10799175545503203 QPGVLIQVY 9 Unmodified _QPGVLIQVY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1016.576965332031 1 1016.57751 1015.57023 0.032575 3.3115E-05 0.20409 0.00020747 0.23667 0.00024059 1016.5772513550455 69.096 0.41221 68.615 68.376 68.788 -0.48071 34 17 3 0 0 0 0.031062 1 37704 37704 54.774 14.816 1 3559800 50189 10277;2688 33949 34720 58403 58403 0.06306930965661195 QPGVLIQVY 9 Unmodified _QPGVLIQVY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7930603027344 2 508.792392 1015.57023 -0.13374 -6.8047E-05 0.66402 0.00033785 0.53028 0.0002698 508.79278485731606 69.097 0.68338 68.616 68.264 68.948 -0.48071 68 29 3 0 0 0 0.087258 1 37787 37787 36.044 5.8194 1 15271000 50190 10277;2688 33949 34720 58404 58404 0.06306930965661195 QPGVLIQVY 9 Unmodified _QPGVLIQVY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 1016.580261230469 1 1016.57751 1015.57023 0.61995 0.00063023 0.17927 0.00018224 0.79922 0.00081246 1016.5776506720241 75.481 0.6899 69.305 68.963 69.652 -6.1757 67 37 2 0 0 0 0.0071894 1 49179 49179 111.29 33.138 1 34978000 50191 10277;2688 33949 34720 58405 58405 0.06306930965661195 QPGVLIQVY 9 Unmodified _QPGVLIQVY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7930297851562 2 508.792392 1015.57023 0.66882 0.00034029 0.31769 0.00016164 0.9865 0.00050193 508.79262247014503 75.528 0.81022 69.352 68.906 69.717 -6.1757 129 43 4 0 0 0 0.06187 2 49434 49311;49434 42.095 5.8194 1 113490000 50192 10277;2688 33949 34720 58406;58407 58407 0.06306930965661195 QPGYDGYYPF 10 Unmodified _QPGYDGYYPF_ 0 0 0 ENST00000475124.1_1_3:53892285-53892672:+|nuORF ENST00000475124.1_1_3:53892285-53892672:+|nuORF ENST00000475124.1_1_3:53892285-53892672:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.8412780761719 3 402.84159 1205.50294 1.1984 0.00048276 -1.0362 -0.0004174 0.16223 6.5355E-05 402.84130428416046 71.791 0.26407 65.615 65.481 65.745 -6.1757 19 14 2 0 0 0 0.35903 1 46947 46947 15.739 0 1 19988000 50193 13952 33950 34721 58408 58408 -0.09159144035970712 QPHAPDRQL 9 Unmodified _QPHAPDRQL_ 0 0 0 REV__ENST00000379598.9_1_20:3782590-3782695:+|nuORF REV__ENST00000379598.9_1_20:3782590-3782695:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.279541015625 2 531.277972 1060.54139 0.38788 0.00020607 3.5284 0.0018746 3.9163 0.0020807 531.2799053441134 89.327 0.29184 88.826 88.688 88.98 -0.50171 17 12 2 0 0 0 0.55144 1 48819 48819 4.3292 0.38484 1 389590 + 50194 26292 33951 34722 58409 58409 0.013542063892145961 QPHAPIPTF 9 Unmodified _QPHAPIPTF_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3;LAMA3|p.Q2624H|1|0.04|ENSG00000053747|chr18:23916644-23916644|G/T|missense_variant nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2701721191406 2 504.269084 1006.52362 -0.036807 -1.8561E-05 1.9373 0.00097692 1.9005 0.00095836 504.2697991242135 53.424 0.2827 52.972 52.783 53.065 -0.45173 27 13 3 0 0 0 0.10734 1 28896 28896 32.305 3.2239 1 2566800 50195 748 33952 34723 58410 58410 0.020614911343727726 QPHFDSPAF 9 Unmodified _QPHFDSPAF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2406005859375 2 523.240524 1044.46649 0.95056 0.00049737 -0.73457 -0.00038436 0.21599 0.00011301 523.2400503673259 46.422 0.64991 46.422 46.149 46.799 0 100 30 5 0 0 0 0.06187 2 25402 25291;25402 42.095 13.013 1 234820000 50196 3564 33953 34724 58411;58412 58412 -0.05395976141994652 QPHFDSPAF 9 Unmodified _QPHFDSPAF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2407836914062 2 523.240524 1044.46649 0.50627 0.0002649 0.055145 2.8854E-05 0.56141 0.00029375 523.2405057477525 46.713 0.4126 46.376 46.169 46.582 -0.33664 71 20 5 0 0 0 0.038285 2 25049 24939;25049 50.855 19.264 1 118330000 50197 3564 33953 34724 58413;58414 58414 -0.05395976141994652 QPHFDSPAF 9 Unmodified _QPHFDSPAF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7433471679688 2 523.240524 1044.46649 0.94921 0.00049666 -0.12317 -6.4448E-05 0.82604 0.00043222 523.2403265453263 46.426 0.28245 46.392 46.246 46.529 -0.033421 22 13 2 0 0 0 0.06187 1 24966 24966 42.095 13.013 1 3599300 50198 3564 33953 34724 58415 58415 -0.05395976141994652 QPHFDSPAF 9 Unmodified _QPHFDSPAF_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2410278320312 2 523.240524 1044.46649 0.53827 0.00028164 0.092852 4.8584E-05 0.63112 0.00033023 523.2404938255536 52.032 0.58334 46.298 46.051 46.635 -5.7345 115 38 4 0 0 0 0.012148 3 32813 32672;32813;32949 74.423 45.341 1 499480000 50199 3564 33953 34724 58416;58417;58418 58417 -0.05395976141994652 QPHFWCCRF 9 Unmodified _QPHFWCCRF_ 0 0 0 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5148620605469 3 408.512756 1222.51644 1.2566 0.00051333 1.8505 0.00075596 3.1071 0.0012693 408.51385353560534 20.182 0.042734 17.525 17.519 17.562 -2.6564 5 3 2 0 0 0 0.58865 1 10752 10752 1.0715 0.29493 1 1681400 + 50200 17110 33954 34725 58419 58419 -0.08591888009368631 QPHIFHFVY 9 Unmodified _QPHIFHFVY_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5373229980469 3 396.538064 1186.59236 0.10486 4.1583E-05 -0.37268 -0.00014778 -0.26782 -0.0001062 396.8724168707144 56.586 0.20036 56.517 56.438 56.638 -0.068737 15 9 2 0 0 0 0.40476 1 30793 30793 12.241 4.7636 1 4553900 50201 16194 33955 34726 58420 58420 0.006531554340881485 QPHIGNYRL 9 Unmodified _QPHIGNYRL_ 0 0 0 nc|ENSG00000075413|P27448-8|MARK3;nc|ENSG00000075413|P27448-6|MARK3;nc|ENSG00000075413|P27448-3|MARK3;nc|ENSG00000075413|P27448-4|MARK3;nc|ENSG00000075413|P27448-2|MARK3;ENSG00000075413|ENST00000429436|MARK3;nc|ENSG00000075413|P27448-7|MARK3;ENST00000558223.5_1_14:103852366-103932133:+|nuORF;nc|ENSG00000116141|Q9P0L2-3|MARK1;ENSG00000116141|ENST00000366917|MARK1;ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2 nc|ENSG00000075413|P27448-8|MARK3;ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5335083007812 3 366.533202 1096.57778 NaN NaN NaN NaN NaN NaN NaN 36.252 1 36.002 35.502 36.502 -0.2497 0 0 0 0.26667 1 19013 19013 19.362 10.386 1 50202 1086;1155 33956 34727 58421 58421 0.03335083285946894 QPHLAGHR 8 Unmodified _QPHLAGHR_ 0 0 0 REV__ENST00000433948.5_2_12:50189219-50189822:-|nuORF REV__ENST00000433948.5_2_12:50189219-50189822:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2502746582031 2 458.249018 914.483482 0.95528 0.00043776 -0.071939 -3.2966E-05 0.88334 0.00040479 458.248593958089 102.21 0.073959 96.03 95.978 96.052 -6.1757 4 2 2 0 0 0 0.80311 1 68607 68607 4.756 0 1 4513500 + 50203 27006 33957 34728 58422 58422 0.02281989254470318 QPHLLPILY 9 Unmodified _QPHLLPILY_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3240356445312 2 547.32386 1092.63317 0.27036 0.00014798 0.31046 0.00016992 0.58082 0.0003179 547.3242390380555 79.402 0.51052 79.457 79.284 79.795 0.05497 40 19 3 0 0 0 0.017075 2 43849 43849;43956 74.423 27.502 1 12914000 50204 6097 33958 34729 58423;58424 58423 0.09055496753717307 QPHLLPILY 9 Unmodified _QPHLLPILY_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3250732421875 2 547.32386 1092.63317 1.1937 0.00065336 -0.028358 -1.5521E-05 1.1654 0.00063784 547.3240659437598 98.035 0.17554 91.859 91.749 91.924 -6.1757 29 10 4 0 0 0 0.036857 1 64973 64973 67.344 10.803 1 90047000 50205 6097 33958 34729 58425 58425 0.09055496753717307 QPHLRKNTL 9 Unmodified _QPHLRKNTL_ 0 0 0 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant;ENSG00000181481|ENST00000328381|RNF135;nc|ENSG00000181481|Q8IUD6-2|RNF135;nc|ENSG00000181481|Q8IUD6-3|RNF135 RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant RNF135|p.Q356Mfs*24|1|0.13|ENSG00000181481|chr17:30998956-30998966|GCCAGCTCTCT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8863525390625 3 369.552485 1105.63563 0.78983 0.00029188 0.47699 0.00017627 1.2668 0.00046815 369.5526423804505 16.62 0.19837 14.064 13.983 14.182 -2.557 57 27 3 0 0 0 0.40615 1 8592 8592 12.175 6.772 1 7932200 50206 8975 33959 34730 58426 58426 0.08703345211370106 QPHLVNIQF 9 Unmodified _QPHLVNIQF_ 0 0 0 ENST00000514704.5_1_4:146002810-146018845:-|nuORF;ENST00000507134.5_1_4:146002810-146018667:-|nuORF;ENST00000511466.5_1_4:145916712-146017251:-|nuORF;ENST00000506851.5_1_4:145888309-146017251:-|nuORF;ENST00000508087.5_1_4:145985483-146017251:-|nuORF;ENST00000510270.5_1_4:145920431-146018845:-|nuORF;ENST00000502562.5_1_4:145954424-146019337:-|nuORF;ENSG00000164162|ENST00000507656|ANAPC10 ENST00000514704.5_1_4:146002810-146018845:-|nuORF ENST00000514704.5_1_4:146002810-146018845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.3003540039062 2 548.300916 1094.58728 0.24166 0.0001325 -0.79711 -0.00043705 -0.55545 -0.00030455 548.3002659722239 63.486 0.5043 63 62.75 63.254 -0.48617 89 22 6 0 0 0 0.038285 1 34544 34544 50.855 8.7605 1 32053000 50207 7150 33960 34731 58427 58427 0.04376851571464613 QPHLVNIQF 9 Unmodified _QPHLVNIQF_ 0 0 0 ENST00000514704.5_1_4:146002810-146018845:-|nuORF;ENST00000507134.5_1_4:146002810-146018667:-|nuORF;ENST00000511466.5_1_4:145916712-146017251:-|nuORF;ENST00000506851.5_1_4:145888309-146017251:-|nuORF;ENST00000508087.5_1_4:145985483-146017251:-|nuORF;ENST00000510270.5_1_4:145920431-146018845:-|nuORF;ENST00000502562.5_1_4:145954424-146019337:-|nuORF;ENSG00000164162|ENST00000507656|ANAPC10 ENST00000514704.5_1_4:146002810-146018845:-|nuORF ENST00000514704.5_1_4:146002810-146018845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3023681640625 2 548.300916 1094.58728 0.33225 0.00018217 -0.067743 -3.7144E-05 0.2645 0.00014503 548.3010813438461 63.021 0.50444 62.999 62.697 63.201 -0.021618 69 25 4 0 0 0 0.016184 2 34419 34419;34520 67.344 29.193 1 27307000 50208 7150 33960 34731 58428;58429 58428 0.04376851571464613 QPHLVNIQF 9 Unmodified _QPHLVNIQF_ 0 0 0 ENST00000514704.5_1_4:146002810-146018845:-|nuORF;ENST00000507134.5_1_4:146002810-146018667:-|nuORF;ENST00000511466.5_1_4:145916712-146017251:-|nuORF;ENST00000506851.5_1_4:145888309-146017251:-|nuORF;ENST00000508087.5_1_4:145985483-146017251:-|nuORF;ENST00000510270.5_1_4:145920431-146018845:-|nuORF;ENST00000502562.5_1_4:145954424-146019337:-|nuORF;ENSG00000164162|ENST00000507656|ANAPC10 ENST00000514704.5_1_4:146002810-146018845:-|nuORF ENST00000514704.5_1_4:146002810-146018845:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.802978515625 2 548.300916 1094.58728 0.77281 0.00042373 -0.045492 -2.4943E-05 0.72732 0.00039879 548.8020196795719 73.094 0.30568 66.918 66.753 67.059 -6.1757 22 14 2 0 0 0 0.031062 1 47845 47845 54.774 6.4277 1 12733000 50209 7150 33960 34731 58430 58430 0.04376851571464613 QPHMVLSSF 9 Oxidation (M) _QPHM(Oxidation (M))VLSSF_ QPHM(1)VLSSF QPHM(82)VLSSF 0 0 1 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2578125 2 531.257859 1060.50117 -0.40604 -0.00021571 0.19126 0.00010161 -0.21478 -0.0001141 531.2580377253139 41.707 0.25233 41.401 41.283 41.535 -0.30682 28 11 4 0 0 0 0.0095811 1 22107 22107 81.613 34.692 1 16599000 50210 7904 33961 34732 58431 58431 1342 -0.026664763255666912 QPHMVLSSF 9 Oxidation (M) _QPHM(Oxidation (M))VLSSF_ QPHM(1)VLSSF QPHM(42)VLSSF 0 0 1 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2579956054688 2 531.257859 1060.50117 0.6422 0.00034118 0.23152 0.000123 0.87372 0.00046417 531.2582027704354 46.025 0.36072 41.07 40.815 41.176 -4.9549 51 23 3 0 0 0 0.06187 1 28420 28420 42.095 9.7891 1 20071000 50211 7904 33961 34732 58432 58432 1342 -0.026664763255666912 QPHMVLSSF 9 Unmodified _QPHMVLSSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2617797851562 2 523.260402 1044.50625 0.13471 7.0489E-05 0.41444 0.00021686 0.54915 0.00028735 523.2606367904409 54.135 0.23536 53.668 53.567 53.803 -0.46664 20 11 2 0 0 0 0.39863 1 29384 29384 12.532 0 1 2415000 50212 7904 33961 34733 58433 58433 -0.014221724629351229 QPHMVLSSF 9 Unmodified _QPHMVLSSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2615966796875 2 523.260402 1044.50625 0.97669 0.00051106 0.55012 0.00028785 1.5268 0.00079892 523.2608234445632 59.525 0.44653 53.411 53.11 53.557 -6.1147 42 23 2 0 0 0 0.022193 1 38174 38174 61.357 23.383 1 48143000 50213 7904 33961 34733 58434 58434 -0.014221724629351229 QPHNKKFV 8 Unmodified _QPHNKKFV_ 0 0 0 ENST00000439231.6_1_12:133318392-133318488:-|nuORF ENST00000439231.6_1_12:133318392-133318488:-|nuORF ENST00000439231.6_1_12:133318392-133318488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.8045043945312 2 499.282526 996.550499 NaN NaN NaN NaN NaN NaN NaN 103.44 1 103.39 102.89 103.89 -0.047928 0 0 0 0.97444 1 57442 57442 2.3027 0 1 50214 13371 33962 34734 58435 58435 0.05208599745560605 QPHPHVLSEL 10 Unmodified _QPHPHVLSEL_ 0 0 0 REV__ENSG00000103742|ENST00000352385|IGDCC4 REV__ENSG00000103742|ENST00000352385|IGDCC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2853393554688 2 578.809105 1155.60366 0.66206 0.00038321 0.23964 0.0001387 0.9017 0.00052191 578.8091352832432 54.81 0.2799 54.743 54.6 54.88 -0.066936 19 13 2 0 0 0 0.23227 1 29837 29837 10.824 0 1 2577800 + 50215 18324 33963 34735 58436 58436 0.03207932737586816 QPHQVNIKL 9 Unmodified _QPHQVNIKL_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.5457153320312 3 359.545219 1075.61383 -0.28145 -0.0001012 1.0026 0.00036048 0.72114 0.00025928 359.54553524361506 34.058 0.27893 33.866 33.694 33.972 -0.19131 24 10 3 0 0 0 0.34134 1 17768 17768 15.248 7.093 1 2557900 50216 10560 33964 34736 58437 58437 0.07904540462777732 QPHQVNIKL 9 Unmodified _QPHQVNIKL_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8810424804688 3 359.545219 1075.61383 1.8785 0.00067541 -0.48428 -0.00017412 1.3942 0.00050129 359.5454704547055 37.122 0.44033 32.838 32.632 33.072 -4.2835 70 26 3 0 0 0 0.42049 2 21727 21727;21863 11.495 3.8858 1 20649000 50217 10560 33964 34736 58438;58439 58438 0.07904540462777732 QPHQVNIKL 9 Unmodified _QPHQVNIKL_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 359.545219 1075.61383 -0.15941 -5.7314E-05 -0.15255 -5.485E-05 -0.31196 -0.00011216 359.5455178895549 32.764 0.16665 32.793 32.698 32.864 0.029743 -0.022527 0.00027045 NaN 11.495 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2011200 50218 10560 33964 34736 0.07904540462777732 QPHSLMDLSW 10 Unmodified _QPHSLMDLSW_ 0 0 0 REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF REV__ENST00000435916.1_1_10:52025510-52026503:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1955261230469 3 405.193858 1212.55974 -0.41804 -0.00016939 2.8219 0.0011434 2.4039 0.00097403 405.1952055237891 22.102 0.11273 22.102 22.05 22.163 0 10 5 2 0 0 0 0.71276 1 11260 11260 0.62683 0 1 667260 + 50219 17610 33965 34737 58440 58440 -0.03803419751079673 QPHSPTSSL 9 Unmodified _QPHSPTSSL_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2387390136719 2 477.237981 952.461409 0.18512 8.8345E-05 0.14984 7.1511E-05 0.33496 0.00015986 477.2378724002867 24.878 0.2593 21.994 21.835 22.094 -2.8831 20 16 2 0 0 0 0.011968 1 13540 13540 74.929 28.908 1 6055400 50220 3923 33966 34738 58441 58441 -0.016722800046068187 QPHVGDYRQL 10 Unmodified _QPHVGDYRQL_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.875244140625 3 404.875516 1211.60472 -0.47959 -0.00019418 -0.076461 -3.0957E-05 -0.55605 -0.00022513 404.87543762455937 29.073 0.16015 29.073 28.982 29.142 0 16 7 3 0 0 0 0.1942 1 15066 15066 23.801 16.192 1 1582900 50221 1599 33967 34739 58442 58442 0.007381471064718426 QPHVGDYRQL 10 Unmodified _QPHVGDYRQL_ 0 0 0 ENSG00000092010|ENST00000206451|PSME1;nc|ENSG00000092010|Q06323-3|PSME1;nc|ENSG00000092010|Q06323-2|PSME1 ENSG00000092010|ENST00000206451|PSME1 ENSG00000092010|ENST00000206451|PSME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8758544921875 3 404.875516 1211.60472 1.1641 0.0004713 0.11179 4.5262E-05 1.2758 0.00051656 404.8756159629567 32.427 0.18897 28.571 28.463 28.652 -3.8562 16 10 2 0 0 0 0.038363 1 18482 18482 55.249 40 1 5174800 50222 1599 33967 34739 58443 58443 0.007381471064718426 QPIAEKIIAKY 11 Unmodified _QPIAEKIIAKY_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2555236816406 3 425.255334 1272.74417 -0.17901 -7.6127E-05 0.62933 0.00026763 0.45032 0.0001915 425.58982298867016 44.779 0.30544 44.463 44.265 44.571 -0.31585 23 16 2 0 0 0 0.31454 1 23859 23859 21.241 13.812 1 17837000 50223 7657 33968 34740 58444 58444 0.1187109167115068 QPIAEKIIAKY 11 Unmodified _QPIAEKIIAKY_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.2565612792969 3 425.255334 1272.74417 1.1712 0.00049806 -0.26472 -0.00011257 0.90649 0.00038549 425.25522899899613 49.345 0.39795 43.949 43.745 44.143 -5.3961 60 25 3 0 0 0 0.20054 2 30849 30721;30849 26.121 20.598 1 62147000 50224 7657 33968 34740 58445;58446 58446 0.1187109167115068 QPIAEKIIAKY 11 Unmodified _QPIAEKIIAKY_ 0 0 0 nc|ENSG00000167693|Q6DKJ4-3|NXN;ENSG00000167693|ENST00000336868|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN nc|ENSG00000167693|Q6DKJ4-3|NXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.8797607421875 2 637.379363 1272.74417 0.79523 0.00050686 -1.0306 -0.00065689 -0.23538 -0.00015002 637.3790504737946 49.341 0.22761 43.945 43.824 44.052 -5.3961 18 13 2 0 0 0 5.2027E-06 1 30867 30867 94.909 72.251 1 22965000 50225 7657 33968 34740 58447 58447 0.1187109167115068 QPIAPQTTF 9 Unmodified _QPIAPQTTF_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7665710449219 2 501.766374 1001.5182 -0.3234 -0.00016227 1.1826 0.00059338 0.85918 0.00043111 501.76702933784725 48.651 0.35553 48.651 48.452 48.808 0 44 16 4 0 0 0 0.022193 1 26667 26667 61.357 38.209 1 14711000 50226 825 33969 34741 58448 58448 0.017497675518939104 QPIAPQTTF 9 Unmodified _QPIAPQTTF_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7666625976562 2 501.766374 1001.5182 0.051 2.559E-05 1.0548 0.00052927 1.1058 0.00055486 501.7669333230175 49.034 0.37398 48.663 48.446 48.82 -0.37172 54 18 4 0 0 0 0.042911 2 26293 26293;26414 48.346 31.404 1 10447000 50227 825 33969 34741 58449;58450 58449 0.017497675518939104 QPIAQPGL 8 Unmodified _QPIAQPGL_ 0 0 0 REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant REV__KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 412.2356567382812 2 412.237253 822.459953 NaN NaN NaN NaN NaN NaN NaN 39.691 1 35.24 34.74 35.74 -4.4509 0 0 0 0.94061 1 23593 23593 12.532 0.89125 1 + 50228 17289 33970 34742 58451 58451 0.04162130697284283 QPIDKPKPF 9 Unmodified _QPIDKPKPF_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2691040039062 2 535.305667 1068.59678 0.45636 0.00024429 0.085893 4.5979E-05 0.54225 0.00029027 535.3055908822429 59.445 0.27276 59.445 59.329 59.602 0 18 11 2 0 0 0 0.21367 1 33089 33089 4.756 0.42677 1 1564300 + 50229 19938 33971 34743 58452 58452 0.06522619856991696 QPIDNVSRNLL 11 Unmodified _QPIDNVSRNLL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8519897460938 2 634.851501 1267.68845 0.25994 0.00016503 0.92021 0.0005842 1.1802 0.00074923 634.8523070139258 52.187 0.2015 51.753 51.649 51.851 -0.43367 20 9 3 0 0 0 0.51324 1 28184 28184 15.739 10.842 1 1673200 50230 7256 33972 34744 58453 58453 0.06531258483551028 QPIDNVSRNLL 11 Unmodified _QPIDNVSRNLL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8524169921875 2 634.851501 1267.68845 1.2372 0.00078541 0.22714 0.0001442 1.4643 0.00092961 634.8521586767542 58.548 0.22937 52.473 52.336 52.565 -6.0745 15 12 2 0 0 0 0.18424 1 37550 37550 32.898 17.649 1 6736600 50231 7256 33972 34744 58454 58454 0.06531258483551028 QPIDVTVTL 9 Unmodified _QPIDVTVTL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1;ENST00000484567.5_1_16:88782015-88783673:-|nuORF ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2819519042969 2 493.281857 984.549162 0.29613 0.00014607 0.067501 3.3297E-05 0.36363 0.00017937 493.2818092223497 77.171 0.49821 70.995 70.739 71.237 -6.1757 45 28 2 0 0 0 0.0082661 1 50413 50413 92.491 7.2194 1 17977000 50232 2128 33973 34745 58455 58455 0.056269208661547054 QPIEGHAASF 10 Unmodified _QPIEGHAASF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|23|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7590942382812 2 528.759081 1055.50361 0.36825 0.00019471 0.07363 3.8932E-05 0.44188 0.00023365 528.7591318038726 31.239 0.56913 31.239 31.071 31.64 0 62 27 4 0 0 0 0.35903 1 16235 16235 24.021 9.1823 1 27828000 50233 5318;130 33974 34746 58456 58456 -0.02192304596246686 QPIEGHAASF 10 Unmodified _QPIEGHAASF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;CLTC-VMP1|24|fusion;CLTC-VMP1|1|fusion;CLTC-VMP1|18|fusion;CLTC-VMP1|2|fusion;CLTC-VMP1|14|fusion;CLTC-VMP1|25|fusion;CLTC-VMP1|23|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7593994140625 2 528.759081 1055.50361 0.6973 0.00036871 0.23007 0.00012165 0.92738 0.00049036 528.7591546385712 35.472 0.57299 31.28 31.057 31.63 -4.1928 100 35 4 0 0 0 0.16524 2 20657 20516;20657 37.974 18.717 1 104360000 50234 5318;130 33974 34746 58457;58458 58458 -0.02192304596246686 QPIELIIII 9 Unmodified _QPIELIIII_ 0 0 0 REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF REV__ENST00000394288.7_2_4:129029149-129029425:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 350.8858947753906 3 351.230237 1050.66888 1.7909 0.00062901 1.4113 0.00049571 3.2022 0.0011247 351.2307853021004 41.988 0.178 37.304 37.173 37.351 -4.6846 16 10 2 0 0 0 0.21806 1 25297 25297 2.7352 0.82882 1 3151800 + 50235 26442 33975 34747 58459 58459 0.1455753421071222 QPIEVTALY 9 Unmodified _QPIEVTALY_ 0 0 0 nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2823486328125 2 517.281857 1032.54916 0.89981 0.00046545 -0.33292 -0.00017221 0.56689 0.00029324 517.2816793022034 72.671 0.47857 66.496 66.179 66.658 -6.1757 43 24 2 0 0 0 0.023481 1 47429 47429 60.074 3.8969 1 20724000 50236 611 33976 34748 58460 58460 0.034189208661246084 QPIEVTALYSF 11 Unmodified _QPIEVTALYSF_ 0 0 0 nc|ENSG00000035115|Q96HL8-4|SH3YL1;nc|ENSG00000035115|Q96HL8-3|SH3YL1;nc|ENSG00000035115|Q96HL8-2|SH3YL1;ENSG00000035115|ENST00000356150|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 nc|ENSG00000035115|Q96HL8-4|SH3YL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3325805664062 2 634.332079 1266.6496 1.219 0.00077326 0.7141 0.00045298 1.9331 0.0012262 634.3321847127175 97.394 0.40166 91.219 90.911 91.313 -6.1757 39 22 2 0 0 0 0.0043436 2 64380 64380;64539 103.42 71.114 1 12184000 50237 611 33977 34749 58461;58462 58461 0.026945331291244656 QPIGLTYQF 9 Unmodified _QPIGLTYQF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7817993164062 2 533.782025 1065.5495 0.52229 0.00027879 -3.0152 -0.0016095 -2.4929 -0.0013307 533.7818423902456 72.077 0.46357 71.601 71.415 71.878 -0.47609 44 19 3 0 0 0 0.06187 1 39412 39412 42.095 13.608 1 10224000 50238 10367 33978 34750 58463 58463 0.019343405859899576 QPIGLTYQF 9 Unmodified _QPIGLTYQF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7830810546875 2 533.782025 1065.5495 0.80265 0.00042844 0.4907 0.00026193 1.2934 0.00069037 533.7823105879835 71.553 0.27861 71.592 71.427 71.706 0.039024 26 12 3 0 0 0 0.30562 1 39373 39373 16.942 2.3606 1 2847200 50239 10367 33978 34750 58464 58464 0.019343405859899576 QPIGLTYQF 9 Unmodified _QPIGLTYQF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MSMS AL20221201_MKP_PDAC_01 4 533.7830810546875 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 79.493 1 73.317 72.817 73.817 -6.1757 0 0 0 0.29524 1 52092 52092 25.399 4.9457 1 50240 10367 33978 34750 58465 58465 0.019343405859899576 QPIGLTYQF 9 Unmodified _QPIGLTYQF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.782025 1065.5495 0.80265 0.00042844 0.4907 0.00026193 1.2934 0.00069037 533.7823105879835 71.553 0.27861 71.592 71.427 71.706 0.039024 -0.0045336 0.00068322 NaN 42.095 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2847200 50241 10367 33978 34750 0.019343405859899576 QPIKESNSL 9 Unmodified _QPIKESNSL_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.274169921875 2 508.274564 1014.53457 -0.024683 -1.2546E-05 -0.25478 -0.0001295 -0.27946 -0.00014204 508.2745482238594 22.838 0.26106 22.838 22.694 22.955 0 30 14 3 0 0 0 0.047196 1 11600 11600 46.021 4.1813 1 3656600 50242 6854 33979 34751 58466 58466 0.027888487179893673 QPILNLEKF 9 Unmodified _QPILNLEKF_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3184204101562 2 551.318774 1100.623 0.10223 5.6364E-05 -0.61285 -0.00033788 -0.51062 -0.00028151 551.3183261199404 65.922 0.27322 65.438 65.267 65.54 -0.48428 20 11 2 0 0 0 0.073961 1 35960 35960 41.956 17.935 1 6735300 50243 2724 33980 34752 58467 58467 0.07670889028440797 QPILNLEKF 9 Unmodified _QPILNLEKF_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 551.318774 1100.623 0.32456 0.00017893 0.9567 0.00052745 1.2813 0.00070638 551.8205432568169 65.474 0.13083 65.474 65.419 65.55 0 0.018092 0.00091102 NaN 41.956 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 851820 50244 2724 33980 34752 0.07670889028440797 QPILPVVK 8 Unmodified _QPILPVVK_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 893.5843505859375 1 893.581865 892.574589 1.0888 0.00097292 -0.018735 -1.6741E-05 1.07 0.00095618 893.5817359666163 105.12 0.25465 98.944 98.76 99.015 -6.1757 62 35 2 0 0 0 0.80992 1 70313 70313 0.69038 0 1 76978000 50245 5187 33981 34753 58468 58468 0.1240044017922628 QPILYSYSF 9 Unmodified _QPILYSYSF_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2820434570312 2 559.281857 1116.54916 0.70108 0.0003921 0.22774 0.00012737 0.92881 0.00051947 559.2816464896938 75.852 0.31564 75.375 75.212 75.528 -0.47714 27 13 3 0 0 0 0.16226 1 41500 41500 26.884 15.243 1 1226900 50246 1943 33982 34754 58469 58469 -0.004450791338740601 QPILYSYSF 9 Unmodified _QPILYSYSF_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2835083007812 2 559.281857 1116.54916 1.0491 0.00058676 0.84897 0.00047482 1.8981 0.0010616 559.2823218950497 83.154 0.37801 76.978 76.747 77.125 -6.1757 30 20 2 0 0 0 0.07916 1 54586 54586 37.974 21.032 1 10163000 50247 1943 33982 34754 58470 58470 -0.004450791338740601 QPILYSYSF 9 Unmodified _QPILYSYSF_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.281857 1116.54916 0.57641 0.00032238 2.2003 0.0012306 2.7767 0.001553 559.2832722913962 75.34 0.20567 75.386 75.266 75.472 0.045959 0.005643 0.0016122 NaN 26.884 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1246100 50248 1943 33982 34754 -0.004450791338740601 QPIMKFINDQY 11 Unmodified _QPIMKFINDQY_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MSMS AL20221201_MKP_PDAC_01 4 698.8509521484375 2 698.850113 1395.68567 NaN NaN NaN NaN NaN NaN NaN 68.371 1 62.195 61.695 62.695 -6.1757 0 0 0 0.5508 1 44621 44621 22.658 7.4096 1 50249 9280;15721 33983 34755 58471 58471 0.003656670343616497 QPINFSVSL 9 Unmodified _QPINFSVSL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7742919921875 2 502.7742 1003.53385 -1.0242 -0.00051492 0.54203 0.00027252 -0.48214 -0.00024241 502.7745437882988 77.461 0.38672 76.978 76.803 77.189 -0.4826 41 18 3 0 0 0 0.070838 1 42462 42462 39.957 18.211 1 6061800 50250 5929 33984 34756 58472 58472 0.032220540689422705 QPINFSVSL 9 Unmodified _QPINFSVSL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7744750976562 2 502.7742 1003.53385 0.14372 7.226E-05 0.17577 8.8371E-05 0.31949 0.00016063 502.7742317938898 76.987 0.37297 77.037 76.848 77.221 0.05011 37 15 3 0 0 0 0.16226 1 42549 42549 26.884 5.137 1 6413800 50251 5929 33984 34756 58473 58473 0.032220540689422705 QPINFSVSL 9 Unmodified _QPINFSVSL_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7744140625 2 502.7742 1003.53385 0.28711 0.00014435 0.32211 0.00016195 0.60922 0.0003063 502.77432603847626 84.672 0.6653 78.497 78.155 78.82 -6.1757 47 34 2 0 0 0 0.16226 1 55680 55680 26.884 5.137 1 73386000 50252 5929 33984 34756 58474 58474 0.032220540689422705 QPINLIFRY 9 Unmodified _QPINLIFRY_ 0 0 0 SNRPE|p.L25I|1|0.03|ENSG00000182004|chr1:203862214-203862214|T/A|missense_variant;ENSG00000182004|ENST00000414487|SNRPE SNRPE|p.L25I|1|0.03|ENSG00000182004|chr1:203862214-203862214|T/A|missense_variant SNRPE|p.L25I|1|0.03|ENSG00000182004|chr1:203862214-203862214|T/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3327026367188 2 582.332216 1162.64988 0.66873 0.00038942 -0.43395 -0.0002527 0.23477 0.00013672 582.3321941683798 74.34 0.28399 73.864 73.69 73.974 -0.47588 26 11 3 0 0 0 0.076472 1 40671 40671 49.933 34.086 1 1290100 50253 9008 33985 34757 58475 58475 0.07505997639646012 QPIPCKPVEY 10 Carbamidomethyl (C) _QPIPC(Carbamidomethyl (C))KPVEY_ QPIPC(1)KPVEY QPIPC(42)KPVEY 0 1 0 ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13 ENST00000272193.10_1_1:204085443-204095259:+|nuORF ENST00000272193.10_1_1:204085443-204095259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8134155273438 2 615.812999 1229.61144 0.92057 0.0005669 -1.0207 -0.00062856 -0.10013 -6.1661E-05 615.8129292667669 36.551 0.2592 36.551 36.43 36.69 0 31 12 3 0 0 0 0.13297 1 19416 19416 41.956 24.843 1 3233300 50254 5558 33986 34758 58476 58476 567 0.0058232394283095346 QPIPCKPVEY 10 Carbamidomethyl (C) _QPIPC(Carbamidomethyl (C))KPVEY_ QPIPC(1)KPVEY QPIPC(74)KPVEY 0 1 0 ENST00000272193.10_1_1:204085443-204095259:+|nuORF;ENSG00000143842|ENST00000367204|SOX13 ENST00000272193.10_1_1:204085443-204095259:+|nuORF ENST00000272193.10_1_1:204085443-204095259:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8126220703125 2 615.812999 1229.61144 1.3883 0.00085496 -0.73105 -0.00045019 0.65729 0.00040477 615.8124251580572 41.848 0.38176 37.24 37.03 37.412 -4.6079 59 23 4 0 0 0 0.021614 2 25273 25124;25273 74.2 46.571 1 15540000 50255 5558 33986 34758 58477;58478 58478 567 0.0058232394283095346 QPIPGLINY 9 Unmodified _QPIPGLINY_ 0 0 0 ENSG00000171723|ENST00000478722|GPHN ENSG00000171723|ENST00000478722|GPHN ENSG00000171723|ENST00000478722|GPHN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7842407226562 2 507.784567 1013.55458 -0.35306 -0.00017928 -0.04364 -2.216E-05 -0.3967 -0.00020144 507.7845638230257 69.975 0.27836 69.495 69.29 69.568 -0.47903 16 12 2 0 0 0 0.042911 1 38250 38250 48.346 26.599 1 1456400 50256 8131 33987 34759 58479 58479 0.04834644448601466 QPKIQEYEF 9 Unmodified _QPKIQEYEF_ 0 0 0 nc|ENSG00000171148|O75528-2|TADA3;ENSG00000171148|ENST00000301964|TADA3 nc|ENSG00000171148|O75528-2|TADA3 nc|ENSG00000171148|O75528-2|TADA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2965698242188 2 591.295496 1180.57644 0.28466 0.00016832 -0.86564 -0.00051185 -0.58098 -0.00034353 591.2941224005144 45.811 0.38308 45.811 45.685 46.068 0 40 18 4 0 0 0 0.14602 1 24968 24968 28.487 11.374 1 10276000 50257 8069 33988 34760 58480 58480 -0.006625955934850936 QPKKSVLY 8 Unmodified _QPKKSVLY_ 0 0 0 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 REV__nc|ENSG00000147036|Q6ZV70-2|LANCL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7880859375 2 481.78711 961.559667 NaN NaN NaN NaN NaN NaN NaN 103.69 1 103.64 103.14 104.14 -0.047928 0 0 0 0.97444 1 57581 57581 0.69038 0 1 + 50258 29690 33989 34761 58481 58481 0.07734948311235712 QPKLPMRTL 9 Unmodified _QPKLPMRTL_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;ENST00000374933.3_1_1:21219982-21267875:-|nuORF nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8829650878906 3 361.882955 1082.62703 1.5969 0.0005779 -1.1819 -0.00042771 0.41502 0.00015019 361.88234430409625 42.454 0.39315 37.769 37.559 37.952 -4.6846 45 25 2 0 0 0 0.2862 2 25757 25626;25757 17.863 9.7076 1 24782000 50259 1143 33990 34762 58482;58483 58483 0.08902655250540192 QPKRAFDM 8 Unmodified _QPKRAFDM_ 0 0 0 ENSG00000179855|ENST00000644452|GIPC3 ENSG00000179855|ENST00000644452|GIPC3 ENSG00000179855|ENST00000644452|GIPC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8223571777344 2 496.752744 991.490935 -0.083136 -4.1298E-05 0.48878 0.0002428 0.40565 0.00020151 496.75286187125715 36.407 0.30932 36.429 36.227 36.536 0.021545 20 13 2 0 0 0 8.7369 1 19195 19195 2.3027 0 1 1474300 50260 8859 33991 34763 58484 58484 -0.00515039260130834 QPKRAFDM 8 Unmodified _QPKRAFDM_ 0 0 0 ENSG00000179855|ENST00000644452|GIPC3 ENSG00000179855|ENST00000644452|GIPC3 ENSG00000179855|ENST00000644452|GIPC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 496.752744 991.490935 -0.36429 -0.00018096 -0.48325 -0.00024006 -0.84754 -0.00042102 496.7522804748465 36.708 0.30623 36.458 36.273 36.579 -0.2497 0.014689 -0.00041291 NaN 2.3027 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2215700 50261 8859 33991 34763 -0.00515039260130834 QPKRDLTRF 9 Unmodified _QPKRDLTRF_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000444895.1_1_9:20532627-20532768:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5566101074219 3 387.556007 1159.64619 0.035794 1.3872E-05 0.50608 0.00019613 0.54187 0.00021001 387.5561945199589 19.897 0.16492 19.905 19.801 19.966 0.0078487 13 8 2 0 0 0 0.43515 1 10139 10139 10.899 8.4005 1 1299200 50262 5914 33992 34764 58485 58485 0.07275327865795589 QPKRDLTRF 9 Unmodified _QPKRDLTRF_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000444895.1_1_9:20532627-20532768:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5573120117188 3 387.556007 1159.64619 1.4158 0.0005487 0.62388 0.00024179 2.0397 0.00079049 387.55636713775664 21.876 0.37426 19.141 18.917 19.291 -2.7348 48 20 3 0 0 0 0.12357 2 11669 11669;11780 29.281 17.763 1 9908700 50263 5914 33992 34764 58486;58487 58486 0.07275327865795589 QPLAAKRAL 9 Unmodified _QPLAAKRAL_ 0 0 0 ENSG00000188167|ENST00000342462|TMPPE;nc|ENSG00000188167|Q6ZT21-2|TMPPE ENSG00000188167|ENST00000342462|TMPPE ENSG00000188167|ENST00000342462|TMPPE MSMS AL20221201_MKP_PDAC_01 4 484.3065795898438 2 484.306001 966.597449 NaN NaN NaN NaN NaN NaN NaN 23.624 1 20.797 20.297 21.297 -2.8273 0 0 0 0.26667 1 12796 12796 26.884 12.978 1 50264 9635 33993 34765 58488 58488 0.11281459296708363 QPLALNVAY 9 Unmodified _QPLALNVAY_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7765197753906 2 494.776742 987.538931 0.13535 6.697E-05 0.76587 0.00037894 0.90123 0.00044591 494.77712991407276 64.29 0.37294 64.29 64.1 64.473 0 26 16 2 0 0 0 0.12841 1 35870 35870 30.225 13.283 1 1298200 50265 5535 33994 34766 58489 58489 0.0446635793156247 QPLALNVAY 9 Unmodified _QPLALNVAY_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7768859863281 2 494.776742 987.538931 0.58997 0.0002919 0.58086 0.0002874 1.1708 0.0005793 494.7768935128621 64.847 0.44611 64.362 64.169 64.615 -0.48512 50 20 3 0 0 0 0.038285 2 35427 35328;35427 50.855 23.971 1 4120400 50266 5535 33994 34766 58490;58491 58491 0.0446635793156247 QPLALNVAY 9 Unmodified _QPLALNVAY_ 0 0 0 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 ENSG00000143621|ENST00000361891|ILF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7770385742188 2 494.776742 987.538931 1.1641 0.00057597 -0.41217 -0.00020393 0.75192 0.00037203 494.7765462283536 71.301 0.59586 65.125 64.749 65.345 -6.1757 39 29 2 0 0 0 0.016184 1 46508 46508 67.344 15.714 1 35659000 50267 5535 33994 34766 58492 58492 0.0446635793156247 QPLALVVQVY 10 Unmodified _QPLALVVQVY_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L;ENST00000587385.6_1_19:34895335-34895721:+|nuORF ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.3353881835938 2 565.334424 1128.6543 NaN NaN NaN NaN NaN NaN NaN 83.924 1 83.424 82.924 83.924 -0.49961 0 0 0 0.99091 1 45932 45932 1.6526 0.85899 1 50268 3937 33995 34767 58493 58493 0.09511462062573628 QPLALVVQVY 10 Unmodified _QPLALVVQVY_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L;ENST00000587385.6_1_19:34895335-34895721:+|nuORF ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2879638671875 2 565.334424 1128.6543 0.73779 0.0004171 -2.3905 -0.0013514 -1.6527 -0.00093435 565.3329353930909 83.252 0.25495 83.315 83.157 83.412 0.063171 14 9 2 0 0 0 0.21571 1 46088 46088 25.399 18.11 1 3919700 50269 3937 33995 34767 58494 58494 0.09511462062573628 QPLALVVQVY 10 Unmodified _QPLALVVQVY_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L;ENST00000587385.6_1_19:34895335-34895721:+|nuORF ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3359375 2 565.334424 1128.6543 1.2142 0.00068644 0.60411 0.00034153 1.8183 0.001028 565.3349773706205 91.836 0.67735 85.661 85.145 85.823 -6.1757 67 37 2 0 0 0 0.085354 2 60505 60505;60639 49.933 29.479 1 11699000 50270 3937 33995 34767 58495;58496 58495 0.09511462062573628 QPLALVVQVY 10 Unmodified _QPLALVVQVY_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L;ENST00000587385.6_1_19:34895335-34895721:+|nuORF ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 565.334424 1128.6543 0.68153 0.00038529 -0.047185 -2.6675E-05 0.63435 0.00035862 565.3347654756233 83.877 0.22336 83.378 83.195 83.418 -0.49961 0.031119 0.000668 NaN 25.399 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 493900 50271 3937 33995 34767 0.09511462062573628 QPLAPDGRIL 10 Unmodified _QPLAPDGRIL_ 0 0 0 REV__ENST00000341500.9_1_19:7267817-7293934:-|nuORF REV__ENST00000341500.9_1_19:7267817-7293934:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3157958984375 2 540.314023 1078.61349 0.51466 0.00027808 0.82504 0.00044578 1.3397 0.00072386 540.3146983750289 49.459 0.1758 49.067 48.943 49.119 -0.3923 15 8 2 0 0 0 0.041224 1 26575 26575 62.573 3.8939 1 5548200 + 50272 25709 33996 34768 58497 58497 0.0773312074295518 QPLAPSGLTL 10 Unmodified _QPLAPSGLTL_ 0 0 0 ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000476218.1_1_7:75508475-75509583:+|nuORF ENSG00000005486|ENST00000006777|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7896728515625 2 498.78985 995.565146 0.17077 8.5177E-05 0.0624 3.1125E-05 0.23317 0.0001163 498.78985987093665 68.782 0.32501 68.301 68.118 68.443 -0.48071 35 14 3 0 0 0 0.27276 1 37552 37552 29.082 0.59474 1 3872200 50273 312 33997 34769 58498 58498 0.06718627103043673 QPLDICHSF 9 Carbamidomethyl (C) _QPLDIC(Carbamidomethyl (C))HSF_ QPLDIC(1)HSF QPLDIC(120)HSF 0 1 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7605590820312 2 558.760766 1115.50698 1.1169 0.00062406 0.14269 7.9728E-05 1.2595 0.00070379 558.7606274035319 57.671 0.34403 51.643 51.443 51.787 -6.0275 50 18 4 0 0 0 0.0044708 2 36819 36819;36946 118.89 82.389 1 55300000 50274 8545 33998 34770 58499;58500 58499 821 -0.04615377813888699 QPLDICHSF 9 Carbamidomethyl (C) _QPLDIC(Carbamidomethyl (C))HSF_ 0 1 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4 nc|ENSG00000175832|P43268-2|ETV4 nc|ENSG00000175832|P43268-2|ETV4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 558.760766 1115.50698 0.031077 1.7365E-05 -2.733 -0.0015271 -2.7019 -0.0015097 558.7608054812831 52.039 0.13251 52.039 51.996 52.129 0 0.19812 -0.0029385 NaN 118.89 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1369600 50275 8545 33998 34770 821 -0.04615377813888699 QPLDLSKAL 9 Unmodified _QPLDLSKAL_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7898254394531 2 492.78985 983.565146 -0.58388 -0.00028773 0.56725 0.00027954 -0.016627 -8.1938E-06 492.7901286664774 55.367 0.22663 55.367 55.283 55.509 0 15 9 2 0 0 0 0.28023 1 30800 30800 18.146 10.236 1 1130500 50276 357 33999 34771 58501 58501 0.07270627103048355 QPLDLSKAL 9 Unmodified _QPLDLSKAL_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7899169921875 2 492.78985 983.565146 0.040573 1.9994E-05 -0.15632 -7.7035E-05 -0.11575 -5.7041E-05 492.7898036379111 55.883 0.24092 55.405 55.259 55.5 -0.47798 20 11 2 0 0 0 0.19127 1 30321 30321 24.021 4.7636 1 2892800 50277 357 33999 34771 58502 58502 0.07270627103048355 QPLEDLASF 9 Unmodified _QPLEDLASF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;ENST00000604297.1_1_X:46421090-46422044:-|nuORF ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2554016113281 2 510.25584 1018.49713 -0.04559 -2.3263E-05 1.2133 0.00061907 1.1677 0.00059581 510.25623228493936 71.019 0.40529 71.019 70.831 71.237 0 67 25 4 0 0 0 0.022193 2 39527 39527;39627 61.357 34.474 1 8159800 50278 5963 34000 34772 58503;58504 58503 -0.0113824254760857 QPLEDLASF 9 Unmodified _QPLEDLASF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;ENST00000604297.1_1_X:46421090-46422044:-|nuORF ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2568054199219 2 510.25584 1018.49713 0.2959 0.00015098 1.1098 0.00056627 1.4057 0.00071725 510.2568457355067 71.557 0.31462 71.08 70.927 71.241 -0.47639 20 12 2 0 0 0 0.41742 1 39164 39164 11.64 0 1 987740 50279 5963 34000 34772 58505 58505 -0.0113824254760857 QPLEDLASF 9 Unmodified _QPLEDLASF_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67;ENST00000604297.1_1_X:46421090-46422044:-|nuORF ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2557373046875 2 510.25584 1018.49713 1.1854 0.00060484 -1.3855 -0.00070696 -0.20013 -0.00010212 510.25527740614837 79.269 0.45467 73.093 72.865 73.32 -6.1757 56 25 3 0 0 0 0.0082661 2 51983 51861;51983 92.491 60.186 1 17854000 50280 5963 34000 34772 58506;58507 58507 -0.0113824254760857 QPLEEIITY 9 Unmodified _QPLEEIITY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2920532226562 2 553.292422 1104.57029 0.54301 0.00030044 -0.62599 -0.00034636 -0.082984 -4.5914E-05 553.2919706789837 69.279 0.55811 69.279 68.998 69.557 0 96 24 5 0 0 0 0.011968 3 38593 38490;38593;38689 74.929 49.53 1 96189000 50281 5917 34001 34773 58508;58509;58510 58509 0.02218886175000989 QPLEEIITY 9 Unmodified _QPLEEIITY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.29248046875 2 553.292422 1104.57029 NaN NaN NaN NaN NaN NaN NaN 69.806 1 69.806 69.306 70.306 0 0 0 0 0.32177 1 38889 38889 24.021 7.0783 1 50282 5917 34001 34773 58511 58511 0.02218886175000989 QPLEEIITY 9 Unmodified _QPLEEIITY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2930297851562 2 553.292422 1104.57029 0.072073 3.9877E-05 0.58539 0.00032389 0.65746 0.00036377 553.2927423467512 69.813 0.40623 69.334 69.109 69.515 -0.47903 61 17 5 0 0 0 0.011968 2 38094 38094;38191 74.929 48.045 1 12387000 50283 5917 34001 34773 58512;58513 58512 0.02218886175000989 QPLEEIITY 9 Unmodified _QPLEEIITY_ 0 0 0 ENST00000496594.5_1_9:130885151-130886781:-|nuORF;ENSG00000148334|ENST00000338961|PTGES2 ENST00000496594.5_1_9:130885151-130886781:-|nuORF ENST00000496594.5_1_9:130885151-130886781:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.292422 1104.57029 0.57063 0.00031572 0.36895 0.00020414 0.93958 0.00051986 553.2924293347189 69.275 0.14595 69.306 69.187 69.333 0.030914 -0.00046692 0.00048088 NaN 74.929 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 4339900 50284 5917 34001 34773 0.02218886175000989 QPLFLVAPRL 10 Unmodified _QPLFLVAPRL_ 0 0 0 REV__ENST00000568636.5_1_16:718678-720341:+|nuORF REV__ENST00000568636.5_1_16:718678-720341:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2401428222656 3 385.241248 1152.70191 NaN NaN NaN NaN NaN NaN NaN 104.25 1 104.15 103.65 104.65 -0.096809 0 0 0 0.9997 1 56805 56805 0.69767 0.19171 1 + 50285 28949 34002 34774 58514 58514 0.13167161053388554 QPLGFKEGV 9 Unmodified _QPLGFKEGV_ 0 0 0 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 ENSG00000176635|ENST00000336726|HORMAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5280151367188 1 974.530558 973.523281 -0.01519 -1.4803E-05 0.75209 0.00073294 0.7369 0.00071814 974.5307594092851 69.189 0.31906 68.708 68.554 68.873 -0.48071 25 13 3 0 0 0 0.61381 1 37911 37911 0.52476 0 1 952990 50286 8611 34003 34775 58515 58515 0.03546071414530161 QPLGMAFVTF 10 Unmodified _QPLGMAFVTF_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7871704101562 2 555.786253 1109.55795 1.2509 0.00069522 -3.2184 -0.0017888 -1.9676 -0.0010936 555.7844968205011 100.33 0.33441 94.15 93.957 94.291 -6.1757 32 20 2 0 0 0 0.27276 1 67158 67158 29.082 0.59474 1 78717000 50287 9775 34004 34776 58516 58516 0.0075557123095677525 QPLGTLPQAVM 11 Oxidation (M) _QPLGTLPQAVM(Oxidation (M))_ QPLGTLPQAVM(1) QPLGTLPQAVM(110) 0 0 1 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8142700195312 2 585.812999 1169.61144 0.25688 0.00015048 1.1577 0.00067818 1.4146 0.00082867 585.8139173404295 53.144 0.40221 52.692 52.457 52.859 -0.45173 36 20 2 0 0 0 5.0416E-09 1 28705 28705 114.2 74.252 1 12854000 50288 8873 34005 34777 58517 58517 1497 0.03342323942820258 QPLGTLPQAVM 11 Oxidation (M) _QPLGTLPQAVM(Oxidation (M))_ QPLGTLPQAVM(1) QPLGTLPQAVM(97) 0 0 1 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 586.27685546875 2 585.812999 1169.61144 0.9723 0.00056959 0.89037 0.00052159 1.8627 0.0010912 585.8136412363631 60.463 0.27916 54.315 54.182 54.462 -6.1478 21 14 2 0 0 0 4.4164E-09 1 38945 38945 96.936 60.429 1 13251000 50289 8873 34005 34777 58518 58518 1497 0.03342323942820258 QPLGTLPQAVM 11 Unmodified _QPLGTLPQAVM_ 0 0 0 nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 nc|ENSG00000179950|Q9UHX1-4|PUF60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8172607421875 2 577.815541 1153.61653 0.83408 0.00048195 0.28286 0.00016344 1.1169 0.00064539 577.8158243535879 75.554 0.44163 69.379 69.138 69.58 -6.1757 35 23 2 0 0 0 0.0041032 1 49387 49387 76.825 44.039 1 13868000 50290 8873 34005 34778 58519 58519 0.04586627805451826 QPLGTPPPFFL 11 Unmodified _QPLGTPPPFFL_ 0 0 0 ENST00000360270.6_1_X:64959754-64959913:+|nuORF ENST00000360270.6_1_X:64959754-64959913:+|nuORF ENST00000360270.6_1_X:64959754-64959913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3350830078125 2 607.334424 1212.6543 1.0302 0.00062568 -0.40306 -0.00024479 0.62714 0.00038088 607.333892718666 91.286 0.34126 91.322 91.165 91.506 0.036499 28 12 3 0 0 0 0.3535 1 50779 50779 29.841 3.5724 1 6085500 50291 12160 34006 34779 58520 58520 0.056474620625749594 QPLHEKSKL 9 Unmodified _QPLHEKSKL_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-2|IQCN REV__nc|ENSG00000130518|Q9H0B3-2|IQCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.3150634765625 2 540.314023 1078.61349 0.33555 0.0001813 1.4841 0.00080189 1.8197 0.00098319 540.3151069495611 49.164 0.1522 49.164 49.042 49.194 0 10 6 2 0 0 0 0.028475 1 27028 27028 56.177 3.9087 1 4696000 + 50292 19724 34007 34780 58521 58521 0.0773312074295518 QPLHEKSKL 9 Unmodified _QPLHEKSKL_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-2|IQCN REV__nc|ENSG00000130518|Q9H0B3-2|IQCN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.314023 1078.61349 0.33555 0.0001813 1.4841 0.00080189 1.8197 0.00098319 540.3151069495611 49.164 0.1522 49.164 49.042 49.194 0 0.048933 0.00046287 NaN 56.177 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4696000 + 50293 19724 34007 34780 0.0773312074295518 QPLHEKSKL 9 Unmodified _QPLHEKSKL_ 0 0 0 REV__nc|ENSG00000130518|Q9H0B3-2|IQCN REV__nc|ENSG00000130518|Q9H0B3-2|IQCN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.314023 1078.61349 0.51466 0.00027808 0.82504 0.00044578 1.3397 0.00072386 540.3146983750289 49.459 0.1758 49.067 48.943 49.119 -0.3923 -0.048933 -0.00024933 NaN 56.177 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5548200 + 50294 19724 34007 34780 0.0773312074295518 QPLIIAVVL 9 Unmodified _QPLIIAVVL_ 0 0 0 nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4 nc|ENSG00000181856|P14672-2|SLC2A4 nc|ENSG00000181856|P14672-2|SLC2A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.6383056640625 1 965.63938 964.632104 0.82635 0.00079795 0.20835 0.00020119 1.0347 0.00099914 965.6390190396774 101.32 0.098442 95.145 95.079 95.178 -6.1757 9 5 2 0 0 0 0.0090851 1 67957 67957 85.357 0 1 14997000 50295 9001 34008 34781 58522 58522 0.1483728238479216 QPLIIAVVL 9 Unmodified _QPLIIAVVL_ 0 0 0 nc|ENSG00000181856|P14672-2|SLC2A4;ENSG00000181856|ENST00000317370|SLC2A4 nc|ENSG00000181856|P14672-2|SLC2A4 nc|ENSG00000181856|P14672-2|SLC2A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.3240051269531 2 483.323328 964.632104 1.0395 0.0005024 -0.12297 -5.9436E-05 0.91649 0.00044296 483.32326183880764 101.31 0.1471 95.138 95.064 95.211 -6.1757 16 8 3 0 0 0 0.038285 1 67962 67962 50.855 0 1 40928000 50296 9001 34008 34781 58523 58523 0.1483728238479216 QPLKKPKWRK 10 Unmodified _QPLKKPKWRK_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MSMS AL20221201_MKP_PDAC_01 4 655.2987670898438 2 654.916781 1307.81901 NaN NaN NaN NaN NaN NaN NaN 105.54 1 99.364 98.864 99.864 -6.1757 0 0 0 1.0024 1 70712 70712 0.40072 0 1 50297 2632 34009 34782 58524 58524 0.177413189930121 QPLKLDTSF 9 Unmodified _QPLKLDTSF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000591307.5_1_17:40972740-40975895:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.787353515625 2 524.787307 1047.56006 0.26717 0.00014021 -0.19836 -0.0001041 0.068809 3.611E-05 524.7871883001794 53.201 0.40942 52.749 52.554 52.963 -0.45173 88 20 6 0 0 0 0.29507 1 28827 28827 18.146 7.3224 1 178690000 50298 3958 34010 34783 58525 58525 0.03818323240398058 QPLKLDTSF 9 Unmodified _QPLKLDTSF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000591307.5_1_17:40972740-40975895:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7868041992188 2 524.787307 1047.56006 0.45738 0.00024003 0.45544 0.00023901 0.91282 0.00047904 524.7874734748663 52.835 0.25503 52.771 52.664 52.919 -0.063423 33 12 3 0 0 0 0.076472 1 28619 28619 34.402 12.655 1 7563100 50299 3958 34010 34783 58526 58526 0.03818323240398058 QPLKLDTSF 9 Unmodified _QPLKLDTSF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000591307.5_1_17:40972740-40975895:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7884521484375 2 524.787307 1047.56006 1.2145 0.00063736 0.054884 2.8802E-05 1.2694 0.00066616 524.7871963397516 59.192 0.60111 53.117 52.851 53.452 -6.0745 106 33 4 0 0 0 0.14859 1 37873 37873 36.506 12.486 1 516610000 50300 3958 34010 34783 58527 58527 0.03818323240398058 QPLLDNQVGF 10 Unmodified _QPLLDNQVGF_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7963256835938 2 565.795663 1129.57677 0.38112 0.00021564 0.17398 9.8435E-05 0.5551 0.00031407 565.7957374410241 66.097 0.49137 66.097 65.88 66.372 0 69 23 4 0 0 0 0.0022539 2 36885 36789;36885 107.19 78.105 1 15362000 50301 374 34011 34784 58528;58529 58529 0.01716824126378924 QPLLDNQVGF 10 Unmodified _QPLLDNQVGF_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7966918945312 2 565.795663 1129.57677 0.38923 0.00022023 -0.6776 -0.00038338 -0.28837 -0.00016316 565.7956171230624 66.656 0.49305 66.172 65.925 66.418 -0.48323 59 23 3 0 0 0 0.012821 1 36425 36425 82.529 65.416 1 9621600 50302 374 34011 34784 58530 58530 0.01716824126378924 QPLLDNQVGF 10 Unmodified _QPLLDNQVGF_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.796630859375 2 565.795663 1129.57677 0.99403 0.00056242 -0.01918 -1.0852E-05 0.97485 0.00055156 565.7956860919048 73.529 0.50999 67.353 67.079 67.589 -6.1757 45 24 2 0 0 0 1.125E-08 2 48117 48006;48117 152.89 116.38 1 27126000 50303 374 34011 34784 58531;58532 58532 0.01716824126378924 QPLLLSVP 8 Unmodified _QPLLLSVP_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7720336914062 2 433.770929 865.527304 NaN NaN NaN NaN NaN NaN NaN 76.451 1 76.499 75.999 76.999 0.047943 0 0 0 0.97444 1 42185 42185 0.69038 0 1 50304 3029 34012 34785 58533 58533 0.08916160908233906 QPLLREVL 8 Unmodified _QPLLREVL_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4 ENSG00000103061|ENST00000263997|SLC7A6OS;ENST00000474100.1_1_1:151372658-151373852:+|nuORF ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2993469238281 2 484.300384 966.586216 0.47968 0.00023231 -1.2657 -0.000613 -0.78606 -0.00038069 484.29942302175095 57.852 0.20364 57.362 57.247 57.45 -0.48974 13 9 2 0 0 0 0.62219 1 31454 31454 24.021 0.87215 1 1894300 50305 2099;6651 34013 34786 58534 58534 0.10158637202562204 QPLLSDNQY 9 Unmodified _QPLLSDNQY_ 0 0 0 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 ENSG00000147676|ENST00000614891|MAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7666625976562 2 539.264196 1076.51384 0.057447 3.0979E-05 1.1665 0.00062904 1.2239 0.00066002 539.2643661132115 44.171 0.21403 44.171 44.07 44.284 0 24 10 3 0 0 0 0.015445 1 24013 24013 68.081 48.642 1 9649800 50306 5874 34014 34787 58535 58535 -0.021357416616638147 QPLLVANAM 9 Unmodified _QPLLVANAM_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MSMS AL20221201_MKP_PDAC_01 4 478.7655944824219 2 478.76532 955.516088 NaN NaN NaN NaN NaN NaN NaN 68.922 1 62.746 62.246 63.246 -6.1757 0 0 0 0.035065 1 45000 45000 64.236 32.119 1 50307 6405 34015 34788 58536 58536 0.03655015542437923 QPLPCPTEVQ 10 Unmodified _QPLPCPTEVQ_ 0 0 0 ENST00000328933.9_1_22:39777925-39778135:+|nuORF ENST00000328933.9_1_22:39777925-39778135:+|nuORF ENST00000328933.9_1_22:39777925-39778135:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 556.2463989257812 2 556.276249 1110.53795 NaN NaN NaN NaN NaN NaN NaN 47.399 1 42.166 41.666 42.666 -5.2339 0 0 0 0.47175 1 29411 29411 27.629 2.2295 1 50308 11841 34016 34789 58537 58537 -0.01290224499643955 QPLQAIMEM 9 2 Oxidation (M) _QPLQAIM(Oxidation (M))EM(Oxidation (M))_ QPLQAIM(1)EM(1) QPLQAIM(64)EM(64) 0 0 2 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7572631835938 2 546.756835 1091.49912 0.57997 0.0003171 -1.5135 -0.00082751 -0.93352 -0.00051041 546.7568532225745 38.894 0.49502 38.894 38.682 39.177 0 45 22 3 0 0 0 0.019303 1 20851 20851 64.236 9.4628 1 9794100 50309 6157 34017 34790 58538 58538 1098;1099 -0.04297273125689571 QPLQAIMEM 9 Unmodified _QPLQAIMEM_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.2404174804688 2 530.76192 1059.50929 1.0097 0.00053592 -1.6709 -0.00088687 -0.66121 -0.00035094 530.761021060045 83.616 0.42041 77.441 77.146 77.567 -6.1757 35 21 2 0 0 0 0.17275 1 54949 54949 21.747 1.293 1 14985000 50310 6157 34017 34791 58539 58539 -0.01808665400449172 QPLSERLTL 9 Unmodified _QPLSERLTL_ 0 0 0 ENSG00000178904|ENST00000392250|DPY19L3;nc|ENSG00000178904|Q6ZPD9-2|DPY19L3 ENSG00000178904|ENST00000392250|DPY19L3 ENSG00000178904|ENST00000392250|DPY19L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8071899414062 2 528.806031 1055.59751 1.2196 0.00064491 -0.63483 -0.0003357 0.58473 0.00030921 528.8058179929702 54.354 0.48403 48.488 48.139 48.623 -5.8653 77 28 3 0 0 0 0.14859 1 34322 34322 36.506 11.515 1 46430000 50311 8780 34018 34792 58540 58540 0.07193414506036788 QPLSKTWEL 9 Unmodified _QPLSKTWEL_ 0 0 0 nc|ENSG00000121481|Q99496-2|RNF2;ENSG00000121481|ENST00000367510|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3015747070312 2 551.300581 1100.58661 0.92026 0.00050734 -0.43316 -0.0002388 0.4871 0.00026854 551.3004370370747 60.032 0.38686 53.917 53.713 54.1 -6.1147 37 20 2 0 0 0 0.11784 1 38651 38651 31.268 8.5321 1 39044000 50312 3585 34019 34793 58541 58541 0.04034012131751297 QPLSKTWEL 9 Unmodified _QPLSKTWEL_ 0 0 0 nc|ENSG00000121481|Q99496-2|RNF2;ENSG00000121481|ENST00000367510|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 nc|ENSG00000121481|Q99496-2|RNF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 551.300581 1100.58661 1.0058 0.00055451 0.2303 0.00012696 1.2361 0.00068147 551.3011167628947 54.25 0.094002 54.25 54.197 54.291 0 0.090214 0.00080099 NaN 31.268 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 615210 50313 3585 34019 34793 0.04034012131751297 QPLSLDCGHSF 11 Carbamidomethyl (C) _QPLSLDC(Carbamidomethyl (C))GHSF_ QPLSLDC(1)GHSF QPLSLDC(140)GHSF 0 1 0 ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.2896728515625 2 630.787512 1259.56047 1.079 0.00068063 0.1383 8.7236E-05 1.2173 0.00076786 630.7874132484807 54.291 0.34189 48.425 48.23 48.572 -5.8653 45 20 3 0 0 0 1.6181E-15 2 34463 34323;34463 140.63 109.36 1 25627000 50314 4381 34020 34794 58542;58543 58543 446 -0.058926251020466225 QPLSTQDNSEV 11 Unmodified _QPLSTQDNSEV_ 0 0 0 ENSG00000163535|ENST00000357799|SGO2;nc|ENSG00000163535|Q562F6-2|SGO2;nc|ENSG00000163535|Q562F6-3|SGO2 ENSG00000163535|ENST00000357799|SGO2 ENSG00000163535|ENST00000357799|SGO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2844848632812 2 609.285857 1216.55716 -0.54978 -0.00033497 -0.59043 -0.00035974 -1.1402 -0.00069471 609.2854129372304 30.782 0.51085 30.782 30.463 30.974 0 37 24 2 0 0 0 0.721 1 15920 15920 2.2828 0 1 2073200 50315 7014 34021 34795 58544 58544 -0.0424559667505946 QPLTPDEYLTY 11 Unmodified _QPLTPDEYLTY_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.3250732421875 2 670.32445 1338.63435 0.17306 0.00011601 0.4474 0.00029991 0.62046 0.00041591 670.3247151856434 67.003 0.43115 67.003 66.795 67.226 0 76 19 5 0 0 0 0.010023 2 37397 37291;37397 67.838 46.301 1 31510000 50316 3290 34022 34796 58545;58546 58546 -0.021423784587341288 QPLTPDEYLTY 11 Unmodified _QPLTPDEYLTY_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.32470703125 2 670.32445 1338.63435 0.54388 0.00036457 -0.03263 -2.1872E-05 0.51125 0.0003427 670.3243773313541 67.626 0.45597 67.143 66.914 67.37 -0.48218 74 19 5 0 0 0 0.0079227 2 36981 36882;36981 70.332 48.795 1 25179000 50317 3290 34022 34796 58547;58548 58548 -0.021423784587341288 QPLTPDEYLTY 11 Unmodified _QPLTPDEYLTY_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.325439453125 2 670.32445 1338.63435 0.65696 0.00044037 0.12933 8.6694E-05 0.78629 0.00052707 670.3245195486519 75.038 0.71915 68.862 68.534 69.253 -6.1757 121 38 4 0 0 0 1.3287E-06 4 48906 48906;49033;49154;49279 103.42 72.151 1 117300000 50318 3290 34022 34796 58549;58550;58551;58552 58549 -0.021423784587341288 QPLTPDEYLTY 11 Unmodified _QPLTPDEYLTY_ 0 0 0 ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 670.32445 1338.63435 0.80517 0.00053973 0.39312 0.00026352 1.1983 0.00080325 670.3246196103088 67.103 0.31094 67.122 67.007 67.318 0.018028 0.03234 0.00012836 NaN 70.332 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3266300 50319 3290 34022 34796 -0.021423784587341288 QPLTPGPSI 9 Unmodified _QPLTPGPSI_ 0 0 0 KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.25537109375 2 455.255643 908.496732 0.40252 0.00018325 -0.52093 -0.00023716 -0.11841 -5.3908E-05 455.25544986381016 46.909 0.49295 46.909 46.656 47.149 0 53 23 3 0 0 0 0.0090948 1 25705 25705 85.272 0 1 9167600 50320 15937 34023 34797 58553 58553 0.03882382523192973 QPLTPGPSI 9 Unmodified _QPLTPGPSI_ 0 0 0 KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2556457519531 2 455.255643 908.496732 0.57301 0.00026086 0.27958 0.00012728 0.85259 0.00038814 455.2558681391692 47.254 0.37908 46.902 46.685 47.064 -0.3526 27 18 2 0 0 0 0.047196 1 25324 25324 46.021 0 1 2250500 50321 15937 34023 34797 58554 58554 0.03882382523192973 QPLTPGPSI 9 Unmodified _QPLTPGPSI_ 0 0 0 KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant KDM1A|p.I804L|1|0.21|ENSG00000004487|chr1:23083215-23083215|A/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2559204101562 2 455.255643 908.496732 1.3036 0.00059349 -0.013129 -5.9773E-06 1.2905 0.00058751 455.2556020179574 54.317 0.49826 48.452 48.158 48.656 -5.8653 63 29 3 0 0 0 0.0082475 2 34332 34332;34471 92.653 0 1 33458000 50322 15937 34023 34797 58555;58556 58555 0.03882382523192973 QPLTSAFLHF 10 Unmodified _QPLTSAFLHF_ 0 0 0 ENSG00000100678|ENST00000356921|SLC8A3;nc|ENSG00000100678|P57103-6|SLC8A3;nc|ENSG00000100678|P57103-7|SLC8A3;nc|ENSG00000100678|P57103|SLC8A3;nc|ENSG00000100678|P57103-3|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 ENSG00000100678|ENST00000356921|SLC8A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.54150390625 3 387.541475 1159.60259 0.037583 1.4565E-05 0.33089 0.00012823 0.36847 0.0001428 387.54172848257747 33.834 0.4113 33.863 33.625 34.036 0.028934 40 12 4 0 0 0 0.69064 1 17864 17864 1.9064 0 1 14121000 50323 1864 34024 34798 58557 58557 0.02917718368644273 QPLVAVQVSF 10 Unmodified _QPLVAVQVSF_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3124389648438 2 544.310949 1086.60735 1.1134 0.00060602 0.69859 0.00038025 1.812 0.00098628 544.3114164749177 86.458 0.41889 80.282 80.054 80.473 -6.1757 36 22 2 0 0 0 0.0575 2 56943 56943;57072 56.177 30.778 1 12945000 50324 1007 34025 34799 58558;58559 58558 0.06750602511419856 QPLVESIWY 9 Unmodified _QPLVESIWY_ 0 0 0 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 ENSG00000176903|ENST00000316836|PNMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7950439453125 2 567.795132 1133.57571 0.87733 0.00049815 1.2044 0.00068385 2.0817 0.001182 567.7954213493565 91.185 0.2719 85.01 84.873 85.145 -6.1757 24 15 2 0 0 0 0.11005 1 60236 60236 41.84 15.571 1 6464900 50325 8631 34026 34800 58560 58560 0.01426609757481856 QPLVGLQVY 9 Unmodified _QPLVGLQVY_ 0 0 0 REV__ENSG00000139610|ENST00000293636|CELA1 REV__ENSG00000139610|ENST00000293636|CELA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7576599121094 2 508.792392 1015.57023 0.49178 0.00025022 -0.87409 -0.00044473 -0.38231 -0.00019451 508.7914900880458 68.605 0.3255 68.605 68.415 68.74 0 24 14 2 0 0 0 0.19613 1 38203 38203 12.532 0 1 491290 + 50326 20416 34027 34801 58561 58561 0.06306930965661195 QPLVGLQVY 9 Unmodified _QPLVGLQVY_ 0 0 0 REV__ENSG00000139610|ENST00000293636|CELA1 REV__ENSG00000139610|ENST00000293636|CELA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7930297851562 2 508.792392 1015.57023 -0.13374 -6.8047E-05 0.66402 0.00033785 0.53028 0.0002698 508.79278485731606 69.097 0.68338 68.616 68.264 68.948 -0.48071 68 29 3 0 0 0 0.30562 1 37887 37887 16.942 0 1 15271000 + 50327 20416 34027 34801 58562 58562 0.06306930965661195 QPLVQVAAWCI 11 Unmodified _QPLVQVAAWCI_ 0 0 0 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF ENSG00000166747|ENST00000299980|AP1G1;ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENSG00000166747|ENST00000299980|AP1G1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8872375488281 3 409.889998 1226.64816 NaN NaN NaN NaN NaN NaN NaN 31.783 1 31.654 31.154 32.154 -0.12915 0 0 0 0.90499 1 16534 16534 7.0371 3.45 1 50328 7526;10470 34028 34802 58563 58563 0.043906205593884806 QPLWIPRYEY 10 Unmodified _QPLWIPRYEY_ 0 0 0 ENSG00000158006|ENST00000374282|PAFAH2 ENSG00000158006|ENST00000374282|PAFAH2 ENSG00000158006|ENST00000374282|PAFAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.8551635742188 2 682.853512 1363.69247 0.71981 0.00049153 0.54306 0.00037083 1.2629 0.00086236 682.8538320580799 68.425 0.24486 68.45 68.337 68.582 0.025154 31 11 3 0 0 0 0.2881 1 37591 37591 38.615 17.078 1 3660600 50329 6556 34029 34803 58564 58564 0.025173479772092833 QPMELPENL 9 Unmodified _QPMELPENL_ 0 0 0 nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4 nc|ENSG00000158711|P28324-2|ELK4 nc|ENSG00000158711|P28324-2|ELK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.5105285644531 3 357.511075 1069.5114 1.5877 0.00056763 -2.9468 -0.0010535 -1.3591 -0.00048588 357.51007985497546 32.062 0.33677 28.367 28.206 28.543 -3.6958 25 18 2 0 0 0 0.45045 1 18221 18221 6.6304 1.7334 1 15803000 50330 6605 34030 34804 58565 58565 -0.020579133909905067 QPMEVQEGY 9 Unmodified _QPMEVQEGY_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7366943359375 2 540.736957 1079.45936 -0.14212 -7.6847E-05 -0.82647 -0.0004469 -0.96858 -0.00052375 540.7369303549722 35.398 0.26971 35.398 35.265 35.534 0 29 13 3 0 0 0 0.011968 2 18682 18682;18724 61.357 44.245 1 8622700 50331 4249 34031 34805 58566;58567 58566 -0.07719076804710312 QPMEVQEGY 9 Unmodified _QPMEVQEGY_ 0 0 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7371215820312 2 540.736957 1079.45936 0.87784 0.00047468 -0.55172 -0.00029833 0.32613 0.00017635 540.7367116706897 41.607 0.53877 37 36.738 37.277 -4.6079 123 35 5 0 0 0 0.0085164 3 24868 24868;24997;25128 99.799 78.052 1 192160000 50332 4249 34031 34805 58568;58569;58570 58568 -0.07719076804710312 QPMEVQEGY 9 Oxidation (M) _QPM(Oxidation (M))EVQEGY_ QPM(1)EVQEGY QPM(69)EVQEGY 0 0 1 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000601150.5_1_19:59059168-59060232:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.734619140625 2 548.734414 1095.45428 0.54269 0.00029779 -0.083382 -4.5755E-05 0.45931 0.00025204 548.734414208303 30.083 0.44805 26.586 26.349 26.797 -3.497 52 21 3 0 0 0 0.014417 2 16861 16861;16970 69.105 30.929 1 102270000 50333 4249 34031 34806 58571;58572 58571 753 -0.0896338066734188 QPMNPTQNM 9 2 Oxidation (M) _QPM(Oxidation (M))NPTQNM(Oxidation (M))_ QPM(1)NPTQNM(1) QPM(71)NPTQNM(71) 0 0 2 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7260131835938 2 546.726066 1091.43758 0.084785 4.6354E-05 0.072292 3.9524E-05 0.15708 8.5878E-05 546.7264118599661 16.299 0.37428 13.742 13.545 13.92 -2.557 106 54 3 0 0 0 0.013323 1 8447 8447 71.134 33.16 1 4133600 50334 49 34032 34807 58573 58573 2;3 -0.10448204824933782 QPMNPTQNM 9 Oxidation (M) _QPMNPTQNM(Oxidation (M))_ QPMNPTQNM(1) QPM(-66)NPTQNM(66) 0 0 1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7290649414062 2 538.728609 1075.44266 0.031603 1.7025E-05 0.318 0.00017132 0.34961 0.00018834 538.729010721487 22.954 0.35638 20.176 20.002 20.359 -2.7784 47 22 3 0 0 0 0.015445 2 12420 12308;12420 68.081 35.295 2 11754000 50335 49 34032 34808 58574;58575 58575 2;3 -0.09203900962324951 QPMNPTQNM 9 Oxidation (M) _QPM(Oxidation (M))NPTQNM_ QPM(1)NPTQNM QPM(59)NPTQNM(-59) 0 0 1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7290649414062 2 538.728609 1075.44266 0.29422 0.0001585 0.38346 0.00020658 0.67767 0.00036508 538.7287710740078 27.92 0.45768 24.771 24.526 24.983 -3.1482 37 24 2 0 0 0 0.024882 2 15433 15433;15552 58.679 31.795 2 20010000 50336 49 34032 34808 58576;58577 58576 2;3 -0.09203900962324951 QPMNPTQNM 9 Unmodified _QPMNPTQNM_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7313232421875 2 530.731151 1059.44775 0.90691 0.00048132 -0.91714 -0.00048676 -0.010235 -5.4322E-06 530.7307832806424 38.146 0.46349 33.778 33.548 34.012 -4.3689 63 27 3 0 0 0 0.011291 2 22425 22425;22552 96.285 50.264 1 35810000 50337 49 34032 34809 58578;58579 58578 -0.0795959709971612 QPMPYLTTY 9 Unmodified _QPMPYLTTY_ 0 0 0 YTHDF3|p.L307*|1|0.08|ENSG00000185728|chr8:63186929-63186929|A/-|frameshift_variant;ENSG00000185728|ENST00000539294|YTHDF3 YTHDF3|p.L307*|1|0.08|ENSG00000185728|chr8:63186929-63186929|A/-|frameshift_variant YTHDF3|p.L307*|1|0.08|ENSG00000185728|chr8:63186929-63186929|A/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2687377929688 2 557.267893 1112.52123 0.95175 0.00053038 1.3706 0.00076379 2.3224 0.0012942 557.2681813794536 70.082 0.3969 63.906 63.706 64.103 -6.1757 49 22 3 0 0 0 0.14602 2 45819 45689;45819 28.487 11.545 1 48785000 50338 9404 34033 34810 58580;58581 58581 -0.03052725385600752 QPMQPTPSM 9 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ QPM(1)QPTPSM(1) QPM(71)QPTPSM(71) 0 0 2 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7257690429688 2 524.725535 1047.43652 -0.17742 -9.3099E-05 -0.63714 -0.00033432 -0.81456 -0.00042742 524.7255079053086 17.183 0.6343 17.183 16.91 17.544 0 393 144 4 0 0 0 0.013323 2 8404 8404;8505 71.134 36.732 1 6263500 50339 3321 34034 34811 58582;58583 58582 593;594 -0.08530419193857597 QPMQPTPSM 9 2 Oxidation (M) _QPM(Oxidation (M))QPTPSM(Oxidation (M))_ QPM(1)QPTPSM(1) QPM(52)QPTPSM(52) 0 0 2 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7257080078125 2 524.725535 1047.43652 0.88046 0.000462 -0.88543 -0.00046461 -0.004972 -2.6089E-06 524.7253818301871 18.826 0.46996 16.204 16.001 16.471 -2.6215 77 33 3 0 0 0 0.03568 2 9957 9850;9957 52.268 24.64 1 11200000 50340 3321 34034 34811 58584;58585 58585 593;594 -0.08530419193857597 QPMQPTPSM 9 Oxidation (M) _QPMQPTPSM(Oxidation (M))_ QPMQPTPSM(1) QPM(-100)QPTPSM(100) 0 0 1 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7276000976562 2 516.728077 1031.4416 -0.087657 -4.5295E-05 -0.56746 -0.00029322 -0.65511 -0.00033852 516.7281463963296 25.8 0.41872 22.849 22.644 23.063 -2.9511 51 26 3 0 0 0 0.0088174 2 14216 14103;14216 103.75 55.402 2 18726000 50341 3321 34034 34812 58586;58587 58587 593;594 -0.07286115331226029 QPMQPTPSM 9 Oxidation (M) _QPM(Oxidation (M))QPTPSM_ QPM(1)QPTPSM QPM(50)QPTPSM(-50) 0 0 1 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7284545898438 2 516.728077 1031.4416 0.58033 0.00029987 0.49583 0.00025621 1.0762 0.00055609 516.727770762802 33.055 0.36172 29.199 29.01 29.371 -3.8562 32 23 3 0 0 0 0.039985 1 18914 18914 49.933 18.665 2 23513000 50342 3321 34034 34812 58588 58588 593;594 -0.07286115331226029 QPMQPTPSM 9 Unmodified _QPMQPTPSM_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7308044433594 2 508.73062 1015.44669 0.67951 0.00034569 1.7441 0.0008873 2.4237 0.001233 508.7315692074774 42.1 0.59742 37.415 37.051 37.648 -4.6846 72 37 2 0 0 0 0.015445 2 25437 25299;25437 68.081 38.999 1 42450000 50343 3321 34034 34813 58589;58590 58590 -0.06041811468628566 QPMQTNVVY 9 Oxidation (M) _QPM(Oxidation (M))QTNVVY_ QPM(1)QTNVVY QPM(68)QTNVVY 0 0 1 ENST00000539828.6_1_16:68119591-68225707:+|nuORF;ENST00000563288.5_1_16:68120670-68248329:+|nuORF;nc|ENSG00000072736|Q12968-4|NFATC3;ENST00000379165.8_1_16:68119584-68225707:+|nuORF;ENST00000553077.5_1_16:68118971-68225707:+|nuORF;nc|ENSG00000072736|Q12968-3|NFATC3;nc|ENSG00000072736|Q12968-2|NFATC3;ENST00000563319.5_1_16:68118971-68248329:+|nuORF;ENSG00000072736|ENST00000346183|NFATC3;ENST00000569766.5_1_16:68118971-68260371:+|nuORF ENST00000539828.6_1_16:68119591-68225707:+|nuORF ENST00000539828.6_1_16:68119591-68225707:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2612915039062 2 548.260599 1094.50665 -0.711 -0.00038981 0.43345 0.00023765 -0.27755 -0.00015217 548.261021494626 32.834 0.3108 32.834 32.677 32.988 0 40 15 3 0 0 0 0.015445 1 17139 17139 68.081 46.334 1 5573700 50344 1091 34035 34814 58591 58591 181 -0.03682797533747362 QPMSFVLEF 9 Oxidation (M) _QPM(Oxidation (M))SFVLEF_ QPM(1)SFVLEF QPM(52)SFVLEF 0 0 1 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2686767578125 2 557.267893 1112.52123 0.68347 0.00038088 0.16286 9.0758E-05 0.84633 0.00047163 557.2680961176258 86.832 0.66211 86.329 86.02 86.682 -0.50318 91 26 5 0 0 0 0.03568 2 47419 47419;47523 52.268 29.12 1 23161000 50345 10370;9540 34036 34815 58592;58593 58592 1562 -0.030527253855780145 QPMSFVLEF 9 Oxidation (M) _QPM(Oxidation (M))SFVLEF_ QPM(1)SFVLEF QPM(71)SFVLEF 0 0 1 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.268798828125 2 557.267893 1112.52123 1.0609 0.00059123 1.1409 0.0006358 2.2019 0.001227 557.2687098034869 93.706 1.1584 87.53 87.233 88.392 -6.1757 135 68 2 0 0 0 0.013323 2 61933 61933;62067 71.134 44.25 1 49295000 50346 10370;9540 34036 34815 58594;58595 58594 1562 -0.030527253855780145 QPMSFVLEF 9 Unmodified _QPMSFVLEF_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2709350585938 2 549.270435 1096.52632 0.32632 0.00017924 0.89481 0.00049149 1.2211 0.00067073 549.2710279857957 98.707 0.23771 98.514 98.392 98.63 -0.1932 17 7 3 0 0 0 0.32871 1 53913 53913 15.847 5.0233 1 973970 50347 10370;9540 34036 34816 58596 58596 -0.018084215229691836 QPMSFVLEF 9 Unmodified _QPMSFVLEF_ 0 0 0 nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF nc|ENSG00000187109|P55209-3|NAP1L1;ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.272216796875 2 549.270435 1096.52632 0.75679 0.00041568 0.28433 0.00015617 1.0411 0.00057186 549.2708321420818 100.7 0.20472 94.525 94.431 94.635 -6.1757 37 14 3 0 0 0 0.022193 1 67386 67386 61.357 39.611 1 315480000 50348 10370;9540 34036 34816 58597 58597 -0.018084215229691836 QPMTAQAASY 10 Unmodified _QPMTAQAASY_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MSMS AL20221201_MKP_PDAC_01 4 534.2452392578125 2 534.244949 1066.47534 NaN NaN NaN NaN NaN NaN NaN 36.219 1 32.026 31.526 32.526 -4.1928 0 0 0 0.039331 1 21127 21127 60.074 27.768 1 50349 10662 34037 34817 58598 58598 -0.05523370567834718 QPMTQHLHVTY 11 Unmodified _QPMTQHLHVTY_ 0 0 0 nc|ENSG00000176946|Q8WY91-2|THAP4;ENSG00000176946|ENST00000407315|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.5580139160156 3 452.223928 1353.64996 -0.36643 -0.00016571 -0.24868 -0.00011246 -0.61511 -0.00027817 452.2239089618608 34.656 0.16987 34.465 34.371 34.541 -0.19131 18 7 3 0 0 0 0.65108 1 18113 18113 4.4062 0 1 6641500 50350 8637 34038 34818 58599 58599 -0.012723704226573318 QPMTQHLHVTY 11 Unmodified _QPMTQHLHVTY_ 0 0 0 nc|ENSG00000176946|Q8WY91-2|THAP4;ENSG00000176946|ENST00000407315|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.224365234375 3 452.223928 1353.64996 0.55418 0.00025062 -0.087431 -3.9538E-05 0.46675 0.00021108 452.22388183486953 38.775 0.59055 34.324 34.068 34.659 -4.4509 108 37 5 0 0 0 0.59689 2 22950 22816;22950 6.2344 2.7959 1 236530000 50351 8637 34038 34818 58600;58601 58601 -0.012723704226573318 QPMTQHLHVTY 11 Unmodified _QPMTQHLHVTY_ 0 0 0 nc|ENSG00000176946|Q8WY91-2|THAP4;ENSG00000176946|ENST00000407315|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 nc|ENSG00000176946|Q8WY91-2|THAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.8325805664062 2 677.832254 1353.64996 0.51748 0.00035077 0.0070746 4.7954E-06 0.52456 0.00035556 677.8322331527858 38.773 0.33614 34.323 34.152 34.488 -4.4509 48 21 3 0 0 0 4.2801E-06 1 22875 22875 96.936 69.307 1 36270000 50352 8637 34038 34818 58602 58602 -0.012723704226573318 QPNASVHQF 9 Unmodified _QPNASVHQF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2506103515625 2 514.251423 1026.48829 -0.33581 -0.00017269 -0.21395 -0.00011002 -0.54977 -0.00028272 514.2512736385044 25.98 0.32631 25.98 25.799 26.125 0 39 15 3 0 0 0 0.15471 2 13385 13287;13385 27.629 15.989 1 3586500 50353 10134 34039 34819 58603;58604 58604 -0.02389171393451761 QPNAYKWKSP 10 Unmodified _QPNAYKWKSP_ 0 0 0 REV__nc|ENSG00000170381|O15041-2|SEMA3E REV__nc|ENSG00000170381|O15041-2|SEMA3E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8788452148438 3 406.880379 1217.61931 NaN NaN NaN NaN NaN NaN NaN 6.7781 1 6.7871 6.2871 7.2871 0.0089307 0 0 0 1.0004 1 3392 3392 0.62683 0.39098 1 + 50354 22476 34040 34820 58605 58605 0.019202192546117658 QPNEEGITAL 10 Unmodified _QPNEEGITAL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.27001953125 2 536.269478 1070.5244 -0.035638 -1.9111E-05 -1.3689 -0.0007341 -1.4045 -0.00075321 536.2687649135389 48.304 0.46766 48.304 48.132 48.6 0 29 22 2 0 0 0 0.067957 1 26475 26475 53.833 29.159 1 6867200 50355 2248 34041 34821 58606 58606 -0.008037590072490275 QPNGEPIVY 9 Unmodified _QPNGEPIVY_ 0 0 0 ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF ENSG00000106346|ENST00000306177|USP42 ENSG00000106346|ENST00000306177|USP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7562561035156 2 508.756007 1015.49746 0.17344 8.8236E-05 -1.4489 -0.00073716 -1.2755 -0.00064892 508.75565552992236 43.592 0.18279 43.592 43.507 43.689 0 16 8 2 0 0 0 0.07916 1 23705 23705 37.974 12.575 1 14933000 50356 2420 34042 34822 58607 58607 -0.00966822827751912 QPNIVIIRF 9 Unmodified _QPNIVIIRF_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3359375 2 550.334759 1098.65496 0.30517 0.00016794 0.82576 0.00045445 1.1309 0.00062239 550.3352804638158 74.335 0.73613 74.379 74.096 74.832 0.043983 68 20 4 0 0 0 0.022193 2 40874 40874;40974 61.357 21.4 1 22650000 50357 1445 34043 34823 58608;58609 58608 0.10958301502273571 QPNIVIIRF 9 Unmodified _QPNIVIIRF_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MSMS AL20221201_MKP_PDAC_01 4 550.3339233398438 2 550.334759 1098.65496 NaN NaN NaN NaN NaN NaN NaN 87.652 1 81.477 80.977 81.977 -6.1757 0 0 0 0.047623 1 57807 57807 58.679 33.28 1 50358 1445 34043 34823 58610 58610 0.10958301502273571 QPNLTNLPP 9 Unmodified _QPNLTNLPP_ 0 0 0 nc|ENSG00000189308|Q6MZP7-2|LIN54;nc|ENSG00000189308|Q6MZP7-4|LIN54;nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2472839355469 2 497.271824 992.529095 -0.12046 -5.9901E-05 -2.651 -0.0013183 -2.7715 -0.0013782 497.2707980809923 35.401 0.19575 35.401 35.265 35.46 0 13 9 2 0 0 0 0.19205 1 18701 18701 14.838 0 1 2912800 50359 16472 34044 34824 58611 58611 0.032531699261767244 QPNMRLRQL 9 Unmodified _QPNMRLRQL_ 0 0 0 ENSG00000128059|ENST00000264220|PPAT;ENST00000425339.2_1_4:57261520-57265668:-|nuORF ENSG00000128059|ENST00000264220|PPAT ENSG00000128059|ENST00000264220|PPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8858032226562 3 385.885358 1154.63425 1.3584 0.0005242 -0.79704 -0.00030757 0.5614 0.00021664 385.88529636877837 34.887 0.50919 30.792 30.549 31.058 -4.0951 87 29 4 0 0 0 0.05483 2 20233 20103;20233 43.772 19.983 1 20109000 50360 4047 34045 34825 58612;58613 58613 0.06311387850973915 QPNPASRAKL 10 Unmodified _QPNPASRAKL_ 0 0 0 nc|ENSG00000141985|Q99961-3|SH3GL1;ENSG00000107295|ENST00000380607|SH3GL2;ENSG00000141985|ENST00000269886|SH3GL1 nc|ENSG00000141985|Q99961-3|SH3GL1 nc|ENSG00000141985|Q99961-3|SH3GL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2096557617188 3 361.208607 1080.60399 1.8759 0.00067759 0.053163 1.9203E-05 1.929 0.00069679 361.20871962168974 21.493 0.29075 18.758 18.685 18.976 -2.7348 30 20 2 0 0 0 0.38026 1 11572 11572 22.775 10.6 1 3256400 50361 2489 34046 34826 58614 58614 0.06691352457414723 QPNPLPLRL 9 Unmodified _QPNPLPLRL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3192138671875 2 524.319109 1046.62366 0.24781 0.00012993 -0.60911 -0.00031937 -0.3613 -0.00018944 524.318621529092 65.07 0.367 64.586 64.382 64.749 -0.48428 39 16 3 0 0 0 0.047196 1 35534 35534 46.021 22 1 3322500 50362 1249 34047 34827 58615 58615 0.10221728468172842 QPNPLPLRL 9 Unmodified _QPNPLPLRL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3201904296875 2 524.319109 1046.62366 0.6818 0.00035748 0.69968 0.00036686 1.3815 0.00072434 524.3194523757614 64.58 0.48816 64.569 64.338 64.826 -0.010529 77 24 4 0 0 0 0.015445 2 35409 35301;35409 68.081 31.954 1 41140000 50363 1249 34047 34827 58616;58617 58617 0.10221728468172842 QPNPLPLRL 9 Unmodified _QPNPLPLRL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3193969726562 2 524.319109 1046.62366 0.9904 0.00051928 -0.23474 -0.00012308 0.75566 0.0003962 524.3191389914007 69.217 0.70509 63.041 62.762 63.467 -6.1757 77 38 3 0 0 0 0.0083938 3 45343 45083;45212;45343 108 61.976 1 82448000 50364 1249 34047 34827 58618;58619;58620 58620 0.10221728468172842 QPNPVEQRY 9 Unmodified _QPNPVEQRY_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.783203125 2 565.783087 1129.55162 NaN NaN NaN NaN NaN NaN NaN 25.32 1 25.32 24.82 25.82 0 0 0 0 0.016974 1 12976 12976 82.529 44.555 1 50365 8061 34048 34828 58621 58621 -0.007972306761985237 QPNPVEQRY 9 Unmodified _QPNPVEQRY_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1 ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.3245849609375 2 565.783087 1129.55162 0.89858 0.0005084 0.27831 0.00015747 1.1769 0.00066587 565.783318006591 28.556 0.34632 25.408 25.246 25.592 -3.1482 28 17 2 0 0 0 0.18735 1 15944 15944 18.373 9.6277 1 6467400 50366 8061 34048 34828 58622 58622 -0.007972306761985237 QPNTPWELV 9 Unmodified _QPNTPWELV_ 0 0 0 REV__ENSG00000196664|ENST00000380659|TLR7 REV__ENSG00000196664|ENST00000380659|TLR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2855224609375 2 542.277106 1082.53966 0.66885 0.0003627 -0.96715 -0.00052446 -0.2983 -0.00016176 542.2764792553509 50.462 0.50711 50.062 49.864 50.371 -0.39994 118 24 7 0 0 0 0.55775 1 27327 27327 3.9444 1.0552 1 387660000 + 50367 23859 34049 34829 58623 58623 0.0016915258058816107 QPPAWTDSY 9 Unmodified _QPPAWTDSY_ 0 0 0 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-2|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7384033203125 2 532.737814 1063.46108 0.58579 0.00031207 1.0434 0.00055585 1.6292 0.00086793 532.7382211706915 47.981 0.65301 47.981 47.517 48.17 0 76 31 4 0 0 0 0.39863 1 26213 26213 12.532 0.89125 1 16549000 50368 4697 34050 34830 58624 58624 -0.0681169972447151 QPPAWTDSY 9 Unmodified _QPPAWTDSY_ 0 0 0 nc|ENSG00000135373|Q9NZC4-3|EHF;ENSG00000135373|ENST00000257831|EHF;nc|ENSG00000135373|Q9NZC4-2|EHF nc|ENSG00000135373|Q9NZC4-3|EHF nc|ENSG00000135373|Q9NZC4-3|EHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7386474609375 2 532.737814 1063.46108 0.95916 0.00051098 0.80113 0.00042679 1.7603 0.00093777 532.7385121146527 54.96 0.55663 49.094 48.799 49.356 -5.8653 86 34 3 0 0 0 0.2143 2 34908 34908;35061 21.747 8.349 1 52597000 50369 4697 34050 34830 58625;58626 58625 -0.0681169972447151 QPPECMED 8 Unmodified _QPPECMED_ 0 0 0 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.342041015625 1 948.343745 947.336468 -0.095183 -9.0266E-05 0.023926 2.269E-05 -0.071257 -6.7576E-05 948.34346998732 65.792 0.53936 59.617 59.266 59.805 -6.1757 59 31 2 0 0 0 0.80763 1 42651 42651 2.0598 1.3694 1 37720000 50370 1617 34051 34831 58627 58627 -0.1393065652766836 QPPHFIEMNN 10 Unmodified _QPPHFIEMNN_ 0 0 0 REV__ENSG00000081014|ENST00000261842|AP4E1 REV__ENSG00000081014|ENST00000261842|AP4E1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2469177246094 3 409.525607 1225.55499 -0.87611 -0.00035879 1.0196 0.00041754 0.14345 5.8748E-05 409.52611142594156 30.333 0.14051 30.333 30.222 30.363 0 8 6 2 0 0 0 0.23986 1 15712 15712 0.69767 0 1 1665600 + 50371 17678 34052 34832 58628 58628 -0.04876303893820477 QPPHFIEMNN 10 Unmodified _QPPHFIEMNN_ 0 0 0 REV__ENSG00000081014|ENST00000261842|AP4E1 REV__ENSG00000081014|ENST00000261842|AP4E1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 409.525607 1225.55499 0.62678 0.00025668 0.98224 0.00040225 1.609 0.00065893 409.526210698281 30.324 0.10192 30.244 30.178 30.28 -0.080429 -0.044583 -3.9147E-05 NaN 0.69767 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 686490 + 50372 17678 34052 34832 -0.04876303893820477 QPPNLSSDWF 10 Unmodified _QPPNLSSDWF_ 0 0 0 REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF REV__ENST00000418924.6_1_14:93042630-93154594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2794189453125 2 595.77747 1189.54039 0.70184 0.00041814 -1.9163 -0.0011417 -1.2145 -0.00072357 595.7765986413913 71.764 0.30194 65.588 65.462 65.764 -6.1757 28 16 2 0 0 0 0.40136 1 46883 46883 21.537 2.28 1 39913000 + 50373 18087 34053 34833 58629 58629 -0.046800527703453554 QPPPHIQA 8 Unmodified _QPPPHIQA_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7370910644531 2 444.240327 886.466101 0.48515 0.00021552 -0.66927 -0.00029732 -0.18412 -8.1793E-05 444.2400347328574 56.911 0.49318 56.911 56.662 57.156 0 35 21 2 0 0 0 8.7369 1 31748 31748 5.2307 0 1 1678100 50374 16152 34054 34834 58630 58630 0.018326489287915138 QPPQGGNQSQG 11 Unmodified _QPPQGGNQSQG_ 0 0 0 ENSG00000197870|ENST00000538488|PRB3 ENSG00000197870|ENST00000538488|PRB3 ENSG00000197870|ENST00000538488|PRB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5042724609375 3 366.50386 1096.48975 0.34125 0.00012507 0.084363 3.0919E-05 0.42561 0.00015599 366.503774527483 98.003 0.43495 97.76 97.645 98.08 -0.24277 31 16 3 0 0 0 0.65108 1 53550 53550 4.4062 0.46175 1 2485500 50375 10014 34055 34835 58631 58631 -0.05463582095330821 QPPRDESL 8 Unmodified _QPPRDESL_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2389221191406 2 471.237981 940.461409 0.17426 8.2118E-05 1.2045 0.00056762 1.3788 0.00064974 471.2384861623112 66.319 0.33649 65.836 65.668 66.005 -0.48323 28 18 2 0 0 0 0.72664 1 36286 36286 14.838 3.198 1 3714600 50376 5787 34056 34836 58632 58632 -0.01120280004624874 QPPRVGGP 8 Unmodified _QPPRVGGP_ 0 0 0 REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2288208007812 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 23.399 1 23.42 22.92 23.92 0.021185 0 0 0 0.97444 1 12052 12052 2.3027 0 1 + 50377 27447 34057 34837 58633 58633 0.028923797573384036 QPPRVGGP 8 Unmodified _QPPRVGGP_ 0 0 0 REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF REV__ENST00000468101.5_1_3:183353437-183368104:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2291870117188 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 23.761 1 23.783 23.283 24.283 0.021185 0 0 0 0.95607 1 12245 12245 9.3474 0 1 + 50378 27447 34057 34837 58634 58634 0.028923797573384036 QPPSVPLL 8 Unmodified _QPPSVPLL_ 0 0 0 REV__nc|ENSG00000179912|Q9Y2K5-3|R3HDM2 REV__nc|ENSG00000179912|Q9Y2K5-3|R3HDM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 850.5034790039062 1 850.503281 849.496004 -0.20197 -0.00017177 0.87174 0.00074142 0.66977 0.00056964 850.5040092883644 101.18 0.29372 101.05 100.81 101.11 -0.13293 19 11 3 0 0 0 0.80992 1 55174 55174 0.69038 0 1 4790400 + 50379 29819 34058 34838 58635 58635 0.06523587874153236 QPQAIITWY 9 Unmodified _QPQAIITWY_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS AL20221201_MKP_PDAC_01 4 560.2958374023438 2 560.295299 1118.57605 NaN NaN NaN NaN NaN NaN NaN 83.601 1 77.426 76.926 77.926 -6.1757 0 0 0 0.12337 1 54979 54979 39.957 15.937 1 50380 5448 34059 34839 58636 58636 0.02150029477343196 QPQCQPCWWT 10 Unmodified _QPQCQPCWWT_ 0 0 0 REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF REV__ENST00000524741.1_1_8:11640652-11643779:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 426.5445251464844 3 426.179443 1275.5165 1.1675 0.00049755 -1.6043 -0.00068373 -0.43687 -0.00018618 426.1786793404482 34.917 0.42462 30.822 30.616 31.041 -4.0951 44 24 2 0 0 0 0.23966 1 20130 20130 3.3196 0.82116 1 10710000 + 50381 21225 34060 34840 58637 58637 -0.11023932800003422 QPQDAGVP 8 Unmodified _QPQDAGVP_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.39404296875 1 811.394458 810.387182 -0.63244 -0.00051316 0.6954 0.00056424 0.06296 5.1086E-05 811.3949467005311 26.64 0.2314 26.64 26.488 26.719 0 15 10 2 0 0 0 0.79887 1 13684 13684 7.2892 0 1 469320 50382 3395 34061 34841 58638 58638 -0.025596230961355104 QPQFQRQGL 9 Unmodified _QPQFQRQGL_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2937622070312 2 551.293622 1100.57269 0.44994 0.00024805 -2.6463 -0.0014589 -2.1963 -0.0012108 551.2920745253468 30.97 0.20091 30.867 30.691 30.891 -0.10269 12 7 3 0 0 0 0.038285 1 16061 16061 50.855 32.709 1 6226600 50383 9279 34062 34842 58639 58639 0.02642779423331376 QPQFQRQGL 9 Unmodified _QPQFQRQGL_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2946166992188 2 551.293622 1100.57269 0.87211 0.00048079 -0.41772 -0.00023029 0.45438 0.0002505 551.2933230748716 34.734 0.36549 30.639 30.473 30.838 -4.0951 47 21 3 0 0 0 0.0088975 2 20127 20001;20127 104.8 54.866 1 15880000 50384 9279 34062 34842 58640;58641 58641 0.02642779423331376 QPQFRAVL 8 Unmodified _QPQFRAVL_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7765502929688 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 48.803 1 48.759 48.259 49.259 -0.04369 0 0 0 0.77249 1 26347 26347 24.674 5.2349 1 50385 10781 34063 34843 58642 58642 0.05913197371273782 QPQHLEKIAY 10 Unmodified _QPQHLEKIAY_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5547180175781 3 409.555784 1225.64552 -0.44706 -0.0001831 -2.6947 -0.0011036 -3.1418 -0.0012867 409.55460564856133 29.152 0.19899 29.152 29.043 29.242 0 14 9 2 0 0 0 0.54083 1 15097 15097 14.218 4.9744 1 1707200 50386 7520;14803 34064 34844 58643 58643 0.041724884260929684 QPQHPLHVTY 10 Unmodified _QPQHPLHVTY_ 0 0 0 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2124938964844 3 407.212128 1218.61456 -0.73413 -0.00029895 0.408 0.00016614 -0.32613 -0.0001328 407.2123274818861 27.476 0.24003 27.476 27.377 27.617 0 32 11 4 0 0 0 0.65023 1 14140 14140 8.4443 8.4443 1 6700800 50387 1522 34065 34845 58644 58644 0.01399335111864275 QPQHPLHVTY 10 Unmodified _QPQHPLHVTY_ 0 0 0 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5464782714844 3 407.212128 1218.61456 0.509 0.00020727 -0.401 -0.00016329 0.108 4.3978E-05 407.2119379890128 27.437 0.28698 27.39 27.225 27.512 -0.046408 33 13 4 0 0 0 0.49559 2 14088 14088;14185 16.566 11.85 1 22624000 50388 1522 34065 34845 58645;58646 58645 0.01399335111864275 QPQHPLHVTY 10 Unmodified _QPQHPLHVTY_ 0 0 0 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2124633789062 3 407.212128 1218.61456 1.202 0.00048948 0.32874 0.00013387 1.5308 0.00062335 407.21213140633324 30.493 0.45716 26.996 26.736 27.193 -3.497 59 22 3 0 0 0 0.56675 1 17149 17149 12.873 8.4665 1 115100000 50389 1522 34065 34845 58647 58647 0.01399335111864275 QPQHPLHVTY 10 Unmodified _QPQHPLHVTY_ 0 0 0 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 ENSG00000089220|ENST00000261313|PEBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3156127929688 2 610.314554 1218.61456 0.98836 0.00060321 0.69402 0.00042357 1.6824 0.0010268 610.3146808127295 30.494 0.39509 26.997 26.779 27.175 -3.497 42 19 3 0 0 0 0.015874 2 17281 17164;17281 103.35 74.272 1 42793000 50390 1522 34065 34845 58648;58649 58649 0.01399335111864275 QPQPPQPPF 9 Unmodified _QPQPPQPPF_ 0 0 0 ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1 ENSG00000090863|ENST00000422840|GLG1 ENSG00000090863|ENST00000422840|GLG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2658081054688 2 518.266542 1034.51853 NaN NaN NaN NaN NaN NaN NaN 52.17 1 51.736 51.236 52.236 -0.43367 0 0 0 0.33856 1 28168 28168 23.148 0 1 50391 1570 34066 34846 58650 58650 0.002651872717478909 QPQQEPLALVF 11 Unmodified _QPQQEPLALVF_ 0 0 0 ENSG00000140398|ENST00000355059|NEIL1;ENST00000564738.5_1_15:75641306-75646619:+|nuORF;ENST00000564951.1_1_15:75639698-75641681:+|nuORF;ENST00000561643.5_1_15:75639698-75645080:+|nuORF ENSG00000140398|ENST00000355059|NEIL1 ENSG00000140398|ENST00000355059|NEIL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8467407226562 2 635.34552 1268.67649 0.97709 0.00062079 -0.33942 -0.00021565 0.63766 0.00040514 635.345133879118 94.623 0.35382 88.447 88.204 88.558 -6.1757 31 20 2 0 0 0 0.50515 1 62639 62639 16.149 0 1 8736400 50392 5231 34067 34847 58651 58651 0.05289641740296247 QPQQLERLLRQ 11 Unmodified _QPQQLERLLRQ_ 0 0 0 REV__CON__Q9N2I2 REV__CON__Q9N2I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2714233398438 3 470.272158 1407.79465 0.074123 3.4858E-05 0.73104 0.00034379 0.80516 0.00037864 470.2723655221249 23.313 0.25147 20.535 20.448 20.7 -2.7784 39 17 3 0 0 0 0.7187 1 12588 12588 1.0136 0.16863 1 4979900 + + 50393 16889 34068 34848 58652 58652 0.10706014048832913 QPQQLVLRL 9 Unmodified _QPQQLVLRL_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-2|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.838134765625 2 547.837665 1093.66078 0.29031 0.00015904 -0.36642 -0.00020074 -0.076114 -4.1698E-05 547.8375834709802 61.87 0.2348 61.838 61.711 61.946 -0.032787 26 11 3 0 0 0 0.069655 1 33770 33770 43.858 11.553 1 8319800 50394 6050 34069 34849 58653 58653 0.1176940001391813 QPQQPYTGQIY 11 Unmodified _QPQQPYTGQIY_ 0 0 0 nc|ENSG00000145817|Q969M3-2|YIPF5;ENSG00000145817|ENST00000274496|YIPF5;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.822265625 2 661.822409 1321.63027 0.73635 0.00048733 -0.04452 -2.9464E-05 0.69183 0.00045787 661.8220857894571 50.467 0.29076 44.928 44.76 45.051 -5.5391 28 18 2 0 0 0 0.0017085 1 31619 31619 89.401 72.288 1 13150000 50395 5728 34070 34850 58654 58654 -0.017684231617522528 QPQQQQQQQQQ 11 Unmodified _QPQQQQQQQQQ_ 0 0 0 REV__ENSG00000090863|ENST00000422840|GLG1;REV__ENSG00000140521|ENST00000268124|POLG;REV__nc|ENSG00000080503|P51531-2|SMARCA2 REV__ENSG00000090863|ENST00000422840|GLG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.9345092773438 3 466.223644 1395.6491 0.054436 2.5379E-05 -1.0073 -0.00046961 -0.95282 -0.00044423 466.22334518188944 72.428 0.27816 72.47 72.316 72.594 0.041725 30 12 3 0 0 0 0.30452 1 39830 39830 1.3296 0 1 2326600 + 50396 17872;20480;17665 34071 34851 58655 58655 -0.03289493537999988 QPQQTSFAL 9 Unmodified _QPQQTSFAL_ 0 0 0 ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 ENSG00000189376|ENST00000276704|C8orf76 ENSG00000189376|ENST00000276704|C8orf76 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2612915039062 2 510.261456 1018.50836 0.2681 0.0001368 -1.2391 -0.00063228 -0.97104 -0.00049548 510.26059724545627 52.533 0.30432 52.533 52.353 52.657 0 26 13 2 0 0 0 0.05447 1 29038 29038 43.858 16.975 1 2763100 50397 9748 34072 34852 58656 58656 -0.00015420453462411388 QPQQTSFAL 9 Unmodified _QPQQTSFAL_ 0 0 0 ENSG00000189376|ENST00000276704|C8orf76;nc|nan|Q96EF9|ZHX1-C8orf76 ENSG00000189376|ENST00000276704|C8orf76 ENSG00000189376|ENST00000276704|C8orf76 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 510.261456 1018.50836 1.2662 0.00064607 -0.67322 -0.00034352 0.59293 0.00030255 510.2610951670921 58.72 0.10273 52.646 52.58 52.683 -6.0745 0.05634 0.00050337 NaN 43.858 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3867900 50398 9748 34072 34852 -0.00015420453462411388 QPQQYGIQY 9 Unmodified _QPQQYGIQY_ 0 0 0 nc|ENSG00000114354|Q92734-2|TFG;ENSG00000114354|ENST00000240851|TFG;nc|ENSG00000114354|Q92734-4|TFG;nc|ENSG00000114354|Q92734-3|TFG;ENST00000481203.1_1_3:100463567-100467372:+|nuORF nc|ENSG00000114354|Q92734-2|TFG nc|ENSG00000114354|Q92734-2|TFG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7724609375 2 562.772188 1123.52982 1.0854 0.00061083 -2.3021 -0.0012956 -1.2167 -0.00068472 562.7710087235948 42.809 0.30494 42.809 42.565 42.87 0 28 15 2 0 0 0 0.013323 1 23135 23135 71.134 35.089 1 4548400 50399 3032 34073 34853 58657 58657 -0.027000354247547875 QPQRRQFWGHW 11 Unmodified _QPQRRQFWGHW_ 0 0 0 ENST00000481024.5_1_X:30671646-30683673:+|nuORF ENST00000481024.5_1_X:30671646-30683673:+|nuORF ENST00000481024.5_1_X:30671646-30683673:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7584533691406 3 509.256843 1524.7487 -0.29858 -0.00015205 1.2975 0.00066076 0.99892 0.00050871 509.59029482472073 17.145 0.030544 17.145 17.123 17.153 0 6 5 2 0 0 0 0.30604 1 8415 8415 0.094841 0 1 167840 50400 14070 34074 34854 58658 58658 0.007314136572631469 QPQSSASASCF 11 Unmodified _QPQSSASASCF_ 0 0 0 REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF REV__ENST00000492667.5_1_10:102249405-102250104:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7347412109375 2 556.737488 1111.46042 0.88765 0.00049419 -3.5636 -0.001984 -2.6759 -0.0014898 556.734961743226 100.68 0.12509 94.505 94.459 94.584 -6.1757 17 8 3 0 0 0 0.44182 1 67412 67412 19.362 4.5237 1 48129000 + 50401 27907 34075 34855 58659 58659 -0.09084862435838659 QPQSSSPVY 9 Unmodified _QPQSSSPVY_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7381591796875 2 496.737814 991.461075 -0.39012 -0.00019379 0.84977 0.00042211 0.45964 0.00022832 496.73807434686813 26.615 0.54478 26.615 26.386 26.93 0 35 25 2 0 0 0 0.23158 1 13686 13686 20.454 4.6064 1 4350000 50402 16069 34076 34856 58660 58660 -0.03499699724466154 QPQSSSPVY 9 Unmodified _QPQSSSPVY_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7370910644531 2 496.737814 991.461075 1.2099 0.00060099 -1.3995 -0.00069521 -0.18968 -9.4222E-05 496.73678319183057 30.601 0.25559 27.105 26.975 27.23 -3.497 17 12 2 0 0 0 0.16226 1 17293 17293 26.884 6.0124 1 23298000 50403 16069 34076 34856 58661 58661 -0.03499699724466154 QPQSSSPVY 9 Unmodified _QPQSSSPVY_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 496.737814 991.461075 -0.39012 -0.00019379 0.84977 0.00042211 0.45964 0.00022832 496.73807434686813 26.615 0.54478 26.615 26.386 26.93 0 0 0 NaN 20.454 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 4350000 50404 16069 34076 34856 -0.03499699724466154 QPQSVLSF 8 Unmodified _QPQSVLSF_ 0 0 0 REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF REV__ENST00000526623.2_1_11:64948241-64949272:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 905.4720458984375 1 905.472709 904.465432 0.22482 0.00020357 0.22688 0.00020544 0.45171 0.00040901 905.4728918161213 39.168 0.45385 39.168 38.97 39.424 0 50 21 3 0 0 0 0.71527 1 21122 21122 15.847 0 1 6729000 + 50405 28375 34077 34857 58662 58662 0.009378094891076216 QPQVPQPQF 9 Unmodified _QPQVPQPQF_ 0 0 0 REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF REV__ENST00000577324.1_1_17:30677304-30687987:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2831420898438 2 534.777274 1067.53999 1.3703 0.00073278 0.62526 0.00033437 1.9955 0.0010672 534.7767121818268 58.79 0.66137 52.715 52.439 53.1 -6.0745 119 36 5 0 0 0 0.2143 1 37589 37589 21.747 0 1 124370000 + 50406 17043 34078 34858 58663 58663 0.008925723004722386 QPQVSGTTDT 10 Unmodified _QPQVSGTTDT_ 0 0 0 REV__ENSG00000196440|ENST00000423738|ARMCX4 REV__ENSG00000196440|ENST00000423738|ARMCX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.7666625976562 2 517.24346 1032.47237 0.81817 0.00042319 3.4729 0.0017964 4.2911 0.0022195 517.7470064450617 49.894 0.38908 44.355 44.094 44.483 -5.5391 37 24 2 0 0 0 0.22941 1 31284 31284 13.906 2.2658 1 21262000 + 50407 23829 34079 34859 58664 58664 -0.04256922420995579 QPRAQDHPL 9 Unmodified _QPRAQDHPL_ 0 0 0 ENST00000382734.9_1_22:25851689-25853254:+|nuORF ENST00000382734.9_1_22:25851689-25853254:+|nuORF ENST00000382734.9_1_22:25851689-25853254:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.1922302246094 3 354.521074 1060.54139 1.0024 0.00035536 -0.51087 -0.00018111 0.4915 0.00017425 354.5208468034976 17.034 0.24129 14.447 14.304 14.545 -2.5866 72 42 2 0 0 0 0.16785 1 8910 8910 11.495 8.8635 1 6403700 50408 12632 34080 34860 58665 58665 0.013542063892145961 QPREEAMLY 9 Oxidation (M) _QPREEAM(Oxidation (M))LY_ QPREEAM(1)LY QPREEAM(44)LY 0 0 1 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7718505859375 2 576.771331 1151.52811 -0.15902 -9.172E-05 0.34814 0.0002008 0.18912 0.00010908 576.7718256743683 29.069 0.199 29.069 28.923 29.122 0 20 9 3 0 0 0 0.05447 1 15030 15030 43.858 21.122 1 1866000 50409 5367 34081 34861 58666 58666 987 -0.04159412505009641 QPRESELY 8 Unmodified _QPRESELY_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1;ENST00000596221.1_1_19:50920282-50921201:+|nuORF;ENST00000597963.5_1_19:50919583-50921201:+|nuORF ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7637939453125 2 511.251089 1020.48762 -0.25832 -0.00013207 1.3533 0.00069187 1.095 0.0005598 511.25112187407024 25.836 0.29015 25.836 25.695 25.986 0 24 13 3 0 0 0 0.55032 1 13232 13232 30.225 0 1 1991600 50410 853 34082 34862 58667 58667 -0.021800108331376578 QPREWGLAV 9 Unmodified _QPREWGLAV_ 0 0 0 ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF ENST00000598304.5_1_19:40170059-40172766:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2845458984375 2 528.285266 1054.55598 0.28333 0.00014968 -0.28516 -0.00015064 -0.0018212 -9.621E-07 528.2849946917196 58.075 0.43604 52.048 51.87 52.306 -6.0275 38 23 2 0 0 0 0.018301 2 37117 37117;37270 65.235 29.108 1 59555000 50411 15783 34083 34863 58668;58669 58668 0.0308827853737057 QPRFHIVRA 9 Unmodified _QPRFHIVRA_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2210998535156 3 375.220958 1122.64105 NaN NaN NaN NaN NaN NaN NaN 24.912 1 24.936 24.436 25.436 0.024429 0 0 0 0.56988 1 12870 12870 13.615 8.2122 1 50412 4671 34084 34864 58670 58670 0.08463068793844286 QPRFHIVRA 9 Unmodified _QPRFHIVRA_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2221984863281 3 375.220958 1122.64105 1.0001 0.00037525 1.5446 0.00057957 2.5447 0.00095481 375.22168579658165 28.073 0.23439 24.925 24.807 25.041 -3.1482 21 12 2 0 0 0 0.20507 1 15603 15603 22.658 10.417 1 8146300 50413 4671 34084 34864 58671 58671 0.08463068793844286 QPRFSAPL 8 Unmodified _QPRFSAPL_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2567443847656 2 458.255977 914.497401 0.52338 0.00023984 0.39793 0.00018235 0.92131 0.0004222 458.25607477192676 40.619 0.35078 40.316 40.067 40.418 -0.30304 25 16 3 0 0 0 0.57045 1 21473 21473 28.487 0 1 1363200 + 50414 22909 34085 34865 58672 58672 0.03673221962901607 QPRFSAPL 8 Unmodified _QPRFSAPL_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 458.255977 914.497401 0.52338 0.00023984 0.39793 0.00018235 0.92131 0.0004222 458.25607477192676 40.619 0.35078 40.316 40.067 40.418 -0.30304 0.048603 -0.0004397 NaN 28.487 25 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1363200 + 50415 22909 34085 34865 0.03673221962901607 QPRGDTVII 9 Unmodified _QPRGDTVII_ 0 0 0 REV__nc|ENSG00000132031|O15232-2|MATN3 REV__nc|ENSG00000132031|O15232-2|MATN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7844848632812 2 499.785099 997.555644 0.095998 4.7978E-05 -0.21429 -0.0001071 -0.11829 -5.9121E-05 499.7850431463706 44.337 0.28263 44.337 44.19 44.472 0 23 14 2 0 0 0 0.08691 1 24088 24088 36.127 0 1 12815000 + 50416 19828 34086 34866 58673 58673 0.05676858817525954 QPRGDTVII 9 Unmodified _QPRGDTVII_ 0 0 0 REV__nc|ENSG00000132031|O15232-2|MATN3 REV__nc|ENSG00000132031|O15232-2|MATN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.785099 997.555644 0.095998 4.7978E-05 -0.21429 -0.0001071 -0.11829 -5.9121E-05 499.7850431463706 44.337 0.28263 44.337 44.19 44.472 0 0 0 NaN 36.127 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 12815000 + 50417 19828 34086 34866 0.05676858817525954 QPRGGSQEHGL 11 Unmodified _QPRGGSQEHGL_ 0 0 0 nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF nc|ENSG00000162711|Q96P20-2|NLRP3 nc|ENSG00000162711|Q96P20-2|NLRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2882690429688 2 583.289068 1164.56358 -0.26321 -0.00015353 -2.1582 -0.0012588 -2.4214 -0.0014124 583.2876465392619 22.381 0.46971 22.381 22.163 22.633 0 32 22 2 0 0 0 0.67477 1 11418 11418 8.1555 0 1 875950 50418 6898 34087 34867 58674 58674 -0.012116139329918951 QPRGPDNSM 9 Unmodified _QPRGPDNSM_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2270812988281 2 501.227091 1000.43963 0.5236 0.00026244 -0.72235 -0.00036206 -0.19875 -9.9619E-05 501.2266920512052 17.395 0.17276 14.809 14.685 14.858 -2.5866 39 26 2 0 0 0 0.023481 1 9043 9043 60.074 31.587 1 2938100 50419 401 34088 34868 58675 58675 -0.06057408024844335 QPRGPIEQVY 10 Unmodified _QPRGPIEQVY_ 0 0 0 nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2;nc|ENSG00000110931|Q96RR4-7|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2 nc|ENSG00000110931|Q96RR4-6|CAMKK2 nc|ENSG00000110931|Q96RR4-6|CAMKK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.81494140625 2 593.814387 1185.61422 NaN NaN NaN NaN NaN NaN NaN 36.881 1 36.881 36.381 37.381 0 0 0 0 0.41201 1 19586 19586 30.637 8.8899 1 50420 2753 34089 34869 58676 58676 0.028839153919989258 QPRIFPSI 8 Unmodified _QPRIFPSI_ 0 0 0 ENST00000262096.12_1_8:17053025-17055120:+|nuORF ENST00000262096.12_1_8:17053025-17055120:+|nuORF ENST00000262096.12_1_8:17053025-17055120:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2798156738281 2 479.279452 956.544351 -0.11309 -5.4204E-05 0.62828 0.00030112 0.51518 0.00024692 479.27988389062205 56.751 0.26044 56.265 56.17 56.43 -0.48554 17 12 2 0 0 0 0.63229 1 30860 30860 23.148 2.6948 1 1023100 50421 11259 34090 34870 58677 58677 0.0643408151404401 QPRKDLWVY 9 Unmodified _QPRKDLWVY_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 ENSG00000120696|ENST00000379483|KBTBD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2203369140625 3 402.220624 1203.64004 0.90665 0.00036467 -0.20502 -8.2465E-05 0.70163 0.00028221 402.2200328803686 47.158 0.33763 42.078 41.919 42.257 -5.0805 38 25 2 0 0 0 0.10734 2 29190 29190;29340 29.841 17.6 1 17799000 50422 3531 34091 34871 58678;58679 58678 0.04636809634257588 QPRLGRWSPRR 11 Unmodified _QPRLGRWSPRR_ 0 0 0 REV__ENST00000543196.6_1_12:51773598-51777285:-|nuORF REV__ENST00000543196.6_1_12:51773598-51777285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2733154296875 3 470.272604 1407.79598 0.074123 3.4858E-05 -0.21693 -0.00010202 -0.14281 -6.7158E-05 470.2723655221249 23.313 0.25147 20.535 20.448 20.7 -2.7784 39 17 3 0 0 0 0.721 1 12700 12700 0.92553 0.22787 1 4979900 + 50423 28631 34092 34872 58680 58680 0.10839692928266231 QPRNPATSV 9 Unmodified _QPRNPATSV_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2558288574219 2 485.259248 968.503943 -0.28811 -0.00013981 -1.9994 -0.00097021 -2.2875 -0.00111 485.2580908810709 19.445 0.3161 19.445 19.248 19.564 0 39 29 2 0 0 0 0.2001 1 9768 9768 23.148 8.5667 1 1397600 50424 2723 34093 34873 58681 58681 0.018431151236086407 QPRNPATSV 9 Unmodified _QPRNPATSV_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MSMS AL20221201_MKP_PDAC_01 4 485.2590942382812 2 485.259248 968.503943 NaN NaN NaN NaN NaN NaN NaN 21.635 1 18.9 18.4 19.4 -2.7348 0 0 0 0.022863 1 11603 11603 74.929 10.693 1 50425 2723 34093 34873 58682 58682 0.018431151236086407 QPRNPGREL 9 Unmodified _QPRNPGREL_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.1963195800781 3 356.19659 1065.56794 -0.58699 -0.00020908 -0.10799 -3.8464E-05 -0.69498 -0.00024755 356.19654426313474 16.428 0.219 16.428 16.331 16.55 0 135 59 3 0 0 0 0.19361 1 8002 8002 22.775 15.346 1 3852000 50426 1985 34094 34874 58683 58683 0.037778952805638255 QPRNPGREL 9 Unmodified _QPRNPGREL_ 0 0 0 ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG ENSG00000101670|ENST00000261292|LIPG MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1967468261719 3 356.19659 1065.56794 1.0657 0.00037961 -0.064862 -2.3103E-05 1.0009 0.00035651 356.1965364257598 17.296 0.25147 14.709 14.545 14.796 -2.5866 102 41 3 0 0 0 0.091924 1 8981 8981 27.088 15.457 1 16523000 50427 1985 34094 34874 58684 58684 0.037778952805638255 QPRPEAVQF 9 Unmodified _QPRPEAVQF_ 0 0 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.3065185546875 2 536.282723 1070.55089 0.22453 0.00012041 -0.77507 -0.00041566 -0.55055 -0.00029525 536.2824209772162 37.634 0.21351 37.634 37.51 37.724 0 26 10 3 0 0 0 0.1176 1 20058 20058 36.127 7.0454 1 6505000 50428 7966 34095 34875 58685 58685 0.01843974674761739 QPRPEEAAEF 10 Unmodified _QPRPEEAAEF_ 0 0 0 ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000497693.1_1_9:37429643-37429838:+|nuORF;ENST00000480596.5_1_9:37429643-37436776:+|nuORF;nc|ENSG00000137106|Q9UBQ7-2|GRHPR ENSG00000137106|ENST00000318158|GRHPR ENSG00000137106|ENST00000318158|GRHPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2822875976562 2 587.280377 1172.5462 -0.42207 -0.00024788 3.0858 0.0018122 2.6637 0.0015644 587.2820410780411 31.867 0.26152 31.867 31.7 31.961 0 19 12 2 0 0 0 0.19566 1 16624 16624 39.95 10.868 1 842920 50429 4900 34096 34876 58686 58686 -0.03316954258662008 QPRPLKNLVL 10 Unmodified _QPRPLKNLVL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2521362304688 3 393.252036 1176.73428 0.18325 7.2062E-05 0.56647 0.00022277 0.74972 0.00029483 393.2521859628609 45.889 0.25229 45.861 45.745 45.997 -0.028015 25 11 3 0 0 0 0.69126 1 24666 24666 3.8763 0 1 4658500 50430 9729 34097 34877 58687 58687 0.15297948456418453 QPRPPPAAL 9 Unmodified _QPRPPPAAL_ 0 0 0 nc|ENSG00000177427|Q96C03-3|MIEF2;ENSG00000177427|ENST00000323019|MIEF2;nc|ENSG00000177427|Q96C03-2|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7776489257812 2 473.777077 945.5396 0.93019 0.0004407 0.34292 0.00016247 1.2731 0.00060317 473.7771451282684 35.058 0.33395 30.963 30.771 31.105 -4.0951 25 19 2 0 0 0 0.026094 1 20264 20264 57.471 17.023 1 7550400 50431 8683 34098 34878 58688 58688 0.06465197371267095 QPRPQSTSLL 10 Unmodified _QPRPQSTSLL_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.81396484375 2 563.814387 1125.61422 -0.28367 -0.00015994 -0.19176 -0.00010812 -0.47543 -0.00026806 563.8142146756937 35.884 0.22527 35.661 35.546 35.772 -0.2224 16 9 2 0 0 0 0.19566 1 18823 18823 39.95 39.95 1 3127900 50432 1605 34099 34879 58689 58689 0.056439153920109675 QPRPQSTSLL 10 Unmodified _QPRPQSTSLL_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;nc|ENSG00000092098|Q96EP0-3|RNF31 ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.814387 1125.61422 0.20092 0.00011328 1.2455 0.00070222 1.4464 0.00081551 563.8147309454115 35.805 0.16387 35.805 35.694 35.858 0 0.071728 0.0013718 NaN 39.95 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1927600 50433 1605 34099 34879 0.056439153920109675 QPRPRPAWR 9 Unmodified _QPRPRPAWR_ 0 0 0 ENST00000315422.8_1_11:64577237-64577864:-|nuORF ENST00000315422.8_1_11:64577237-64577864:-|nuORF ENST00000315422.8_1_11:64577237-64577864:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.331787109375 2 582.330873 1162.64719 0.7906 0.00046039 0.90488 0.00052694 1.6955 0.00098733 582.3313400001861 73.768 0.66901 73.812 73.589 74.258 0.043983 111 30 6 0 0 0 0.41742 1 40705 40705 11.64 11.64 1 606590000 50434 11731 34100 34880 58690 58690 0.07237587025338144 QPRPRSSDL 9 Unmodified _QPRPRSSDL_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MSMS AL20221201_MKP_PDAC_01 4 352.5252075195312 3 352.524595 1054.55196 NaN NaN NaN NaN NaN NaN NaN 16.01 1 13.453 12.953 13.953 -2.557 0 0 0 0.79771 1 8263 8263 6.6304 0.89852 1 50435 5395 34101 34881 58691 58691 0.026861890436521207 QPRPSAAF 8 Unmodified _QPRPSAAF_ 0 0 0 ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2332763671875 2 437.232502 872.450451 1.4544 0.00063593 0.7426 0.00032469 2.197 0.00096062 437.2325150624711 49.956 0.4248 49.907 49.723 50.148 -0.048828 41 20 3 0 0 0 0.80624 1 27018 27018 2.8892 0 1 3444000 50436 11114 34102 34882 58692 58692 0.009123624117592044 QPRPSAAF 8 Unmodified _QPRPSAAF_ 0 0 0 ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF ENST00000243918.9_1_20:43991701-43991908:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 437.232502 872.450451 0.54716 0.00023924 0.4477 0.00019575 0.99486 0.00043499 437.2327117180187 49.857 0.25179 49.857 49.735 49.986 0 -0.02481 -0.00023566 NaN 2.8892 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1333300 50437 11114 34102 34882 0.009123624117592044 QPRREEAVSAL 11 Unmodified _QPRREEAVSAL_ 0 0 0 ENST00000538277.1_1_11:62603381-62607042:-|nuORF;ENST00000453708.6_1_11:62603082-62607042:-|nuORF;ENST00000540620.5_1_11:62602715-62607042:-|nuORF;ENST00000541930.5_1_11:62601897-62607060:-|nuORF;nc|ENSG00000133316|Q6RFH5-2|WDR74;ENSG00000133316|ENST00000278856|WDR74 ENST00000538277.1_1_11:62603381-62607042:-|nuORF ENST00000538277.1_1_11:62603381-62607042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2297058105469 3 419.229959 1254.66805 -0.40129 -0.00016823 1.0168 0.00042625 0.61547 0.00025802 419.23020463456066 23.799 0.19896 23.799 23.694 23.893 0 21 9 3 0 0 0 0.60863 1 12123 12123 10.899 3.4219 1 871110 50438 4506 34103 34883 58693 58693 0.05090087823714384 QPRRISAISV 10 Unmodified _QPRRISAISV_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2284240722656 3 376.22789 1125.66184 -0.15442 -5.8098E-05 0.3915 0.00014729 0.23708 8.9196E-05 376.2280983329699 30.765 0.34395 30.795 30.604 30.948 0.030106 40 14 4 0 0 0 0.30673 1 16089 16089 27.088 7.9444 1 8197800 50439 8474;6964 34104 34884 58694 58694 0.10403614382835258 QPRRISAISV 10 Unmodified _QPRRISAISV_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2283020019531 3 376.22789 1125.66184 1.3482 0.00050723 -0.80666 -0.00030349 0.54153 0.00020374 376.2275451874314 34.376 0.45246 30.28 30.005 30.457 -4.0951 55 25 3 0 0 0 0.30673 1 19803 19803 27.088 8.3671 1 29686000 50440 8474;6964 34104 34884 58695 58695 0.10403614382835258 QPRRISAISV 10 Unmodified _QPRRISAISV_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000163214|Q6P158-2|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36;ENSG00000174953|ENST00000496811|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36 ENSG00000163214|ENST00000457308|DHX57;nc|ENSG00000174953|Q9H2U1-3|DHX36 nc|ENSG00000174953|Q9H2U1-3|DHX36 MSMS AL20221201_MKP_PDAC_01 4 563.8386840820312 2 563.838197 1125.66184 NaN NaN NaN NaN NaN NaN NaN 34.366 1 30.271 29.771 30.771 -4.0951 0 0 0 0.48286 1 19806 19806 24.991 4.5764 1 50441 8474;6964 34104 34884 58696 58696 0.10403614382835258 QPRRISAVSV 10 Unmodified _QPRRISAVSV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.5563354492188 3 371.556007 1111.64619 1.2432 0.0004619 0.12832 4.7679E-05 1.3715 0.00050958 371.5559398450091 28.471 0.39975 25.323 25.097 25.497 -3.1482 47 20 3 0 0 0 0.50362 1 15883 15883 14.218 5.9317 1 28918000 50442 4745 34105 34885 58697 58697 0.0948332786579158 QPRRLLNTL 9 Unmodified _QPRRLLNTL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.8964233398438 3 370.896252 1109.66693 0.096941 3.5955E-05 -0.2766 -0.00010259 -0.17966 -6.6636E-05 370.89628243204356 34.268 0.43773 34.296 34.123 34.561 0.027401 59 20 4 0 0 0 0.18144 1 18026 18026 24.991 8.4251 1 40920000 50443 6882 34106 34886 58698 58698 0.11647918245466826 QPRRLLNTL 9 Unmodified _QPRRLLNTL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8970642089844 3 370.896252 1109.66693 0.97702 0.00036237 0.11192 4.1511E-05 1.0889 0.00040389 370.896334781736 38.51 0.44739 34.141 33.932 34.379 -4.3689 84 28 4 0 0 0 0.14594 2 22667 22667;22804 28.495 13.473 1 94306000 50444 6882 34106 34886 58699;58700 58699 0.11647918245466826 QPRRLLNTL 9 Unmodified _QPRRLLNTL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8421020507812 2 555.840739 1109.66693 0.46962 0.00026103 0.71717 0.00039863 1.1868 0.00065966 555.8412371625094 38.526 0.35358 34.157 33.98 34.333 -4.3689 51 22 3 0 0 0 0.19361 1 22836 22836 19.257 0 1 34476000 50445 6882 34106 34886 58701 58701 0.11647918245466826 QPRRLLNTL 9 Unmodified _QPRRLLNTL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 370.896252 1109.66693 -0.27163 -0.00010075 -2.9583 -0.0010972 -3.23 -0.001198 371.22900154114404 34.532 0.059372 34.341 34.312 34.371 -0.19131 0.081621 -0.0032505 NaN 28.495 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 981250 50446 6882 34106 34886 0.11647918245466826 QPRRPPRTH 9 Unmodified _QPRRPPRTH_ 0 0 0 ENST00000418505.3_1_2:241494422-241508600:-|nuORF ENST00000418505.3_1_2:241494422-241508600:-|nuORF ENST00000418505.3_1_2:241494422-241508600:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2197570800781 3 382.219729 1143.63736 NaN NaN NaN NaN NaN NaN NaN 68.537 1 68.056 67.556 68.556 -0.48071 0 0 0 0.85798 1 37459 37459 0.23584 0 1 50447 13070 34107 34887 58702 58702 0.071283990199845 QPRRRDLL 8 Unmodified _QPRRRDLL_ 0 0 0 REV__ENSG00000183921|ENST00000602312|SDR42E2 REV__ENSG00000183921|ENST00000602312|SDR42E2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.2025451660156 3 351.880713 1052.62031 -0.59059 -0.00020782 0.63058 0.00022189 0.03999 1.4072E-05 351.8810204323611 14.819 0.086584 14.788 14.745 14.832 -0.030868 32 20 2 0 0 0 8.7369 1 7258 7258 1.6526 0 1 415680 + 50448 23388 34108 34888 58703 58703 0.09610478414197132 QPRSHHWL 8 Unmodified _QPRSHHWL_ 0 0 0 REV__ENST00000488952.1_1_2:96809981-96810071:-|nuORF REV__ENST00000488952.1_1_2:96809981-96810071:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1859741210938 3 354.186025 1059.53625 -0.34276 -0.0001214 -0.25496 -9.0302E-05 -0.59772 -0.0002117 354.18603023389153 22.037 0.25694 22.037 21.947 22.204 0 25 18 2 0 0 0 0.80676 1 11276 11276 1.6526 0.45928 1 615140 + 50449 27851 34109 34889 58704 58704 0.008859473172833532 QPRSLHHH 8 Unmodified _QPRSLHHH_ 0 0 0 ENST00000533005.5_1_11:67811756-67818283:+|nuORF ENST00000533005.5_1_11:67811756-67818283:+|nuORF ENST00000533005.5_1_11:67811756-67818283:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2630615234375 2 506.265199 1010.51585 NaN NaN NaN NaN NaN NaN NaN 20.226 1 20.226 19.726 20.726 0 0 0 0 0.97444 1 10166 10166 0.79363 0 1 50450 14933 34110 34890 58705 58705 0.011007766574721245 QPRSPGRSSL 10 Unmodified _QPRSPGRSSL_ 0 0 0 nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENSG00000178075|ENST00000358160|GRAMD1C nc|ENSG00000178075|Q8IYS0-2|GRAMD1C nc|ENSG00000178075|Q8IYS0-2|GRAMD1C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.9174499511719 3 362.200111 1083.5785 0.89283 0.00032338 -1.6608 -0.00060154 -0.76797 -0.00027816 362.1996124574794 16.711 0.11715 14.154 14.116 14.233 -2.557 28 20 2 0 0 0 0.23489 1 8680 8680 5.0475 3.7179 1 2368100 50451 8728 34111 34891 58706 58706 0.04005877935014723 QPRVPLPR 8 Unmodified _QPRVPLPR_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7991943359375 2 481.798343 961.582134 0.2632 0.00012681 0.069229 3.3354E-05 0.33243 0.00016016 481.79840413659997 23.576 0.17721 20.748 20.613 20.791 -2.8273 12 9 2 0 0 0 0.79783 1 12780 12780 7.9102 0.62092 1 2560100 + 50452 26289 34112 34892 58707 58707 0.09980592499505292 QPRVTGVVL 9 Unmodified _QPRVTGVVL_ 0 0 0 ENSG00000109610|ENST00000382120|SOD3 ENSG00000109610|ENST00000382120|SOD3 ENSG00000109610|ENST00000382120|SOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7975158691406 2 484.798009 967.581465 1.1362 0.00055085 -0.68608 -0.00033261 0.45017 0.00021824 484.79764017308304 50.475 0.3068 44.936 44.71 45.017 -5.5391 31 19 2 0 0 0 0.022193 1 31711 31711 61.357 13.012 1 19331000 50453 2659 34113 34893 58708 58708 0.09637753059814713 QPRYPVNSV 9 Unmodified _QPRYPVNSV_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2824096679688 2 530.282723 1058.55089 -0.52536 -0.00027859 -0.07666 -4.0652E-05 -0.60202 -0.00031924 530.2826839920413 30.404 0.38523 30.404 30.222 30.607 0 58 18 4 0 0 0 0.0044708 2 15848 15749;15848 118.89 72.874 1 25168000 50454 3515 34114 34894 58709;58710 58710 0.023959746747550525 QPRYPVNSV 9 Unmodified _QPRYPVNSV_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2838745117188 2 530.282723 1058.55089 0.50855 0.00026968 1.1862 0.00062903 1.6948 0.00089871 530.2831996760372 30.404 0.46268 30.323 30.178 30.641 -0.080431 42 17 4 0 0 0 0.0086904 2 15752 15752;15853 107.19 63.329 1 5471400 50455 3515 34114 34894 58711;58712 58711 0.023959746747550525 QPRYPVNSV 9 Unmodified _QPRYPVNSV_ 0 0 0 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 ENSG00000120438|ENST00000321394|TCP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2833251953125 2 530.282723 1058.55089 1.0082 0.00053463 0.32143 0.00017045 1.3296 0.00070508 530.282694587701 34.227 0.54588 30.242 29.965 30.511 -3.9853 92 30 4 0 0 0 0.0085164 1 19766 19766 99.799 63.672 1 125010000 50456 3515 34114 34894 58713 58713 0.023959746747550525 QPRYSIFKL 9 Unmodified _QPRYSIFKL_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5572814941406 3 384.557236 1150.64988 -0.23407 -9.0012E-05 0.90261 0.0003471 0.66854 0.00025709 384.5575851561297 53.923 0.31677 53.856 53.704 54.021 -0.066936 35 15 3 0 0 0 0.069655 1 29255 29255 40.239 40.239 1 6900500 50457 3393 34115 34895 58714 58714 0.08057997639662062 QPSASLGVGY 10 Unmodified _QPSASLGVGY_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7485046386719 2 489.748182 977.481811 NaN NaN NaN NaN NaN NaN NaN 44.154 1 44.154 43.654 44.654 0 0 0 0 0.095408 1 24015 24015 51.63 15.586 1 50458 10662 34116 34896 58715 58715 -0.007831093447975945 QPSDLIFEF 9 Unmodified _QPSDLIFEF_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.271484375 2 548.27149 1094.52843 0.31401 0.00017216 0.23575 0.00012925 0.54976 0.00030142 548.2715517337045 93.538 0.35012 93.538 93.344 93.695 0 47 18 3 0 0 0 0.16226 1 51730 51730 26.884 11.036 1 2073700 50459 2012 34117 34897 58716 58716 -0.015056695135399423 QPSDLIFEF 9 Unmodified _QPSDLIFEF_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2713012695312 2 548.27149 1094.52843 0.33321 0.00018269 -0.30669 -0.00016815 0.026526 1.4543E-05 548.2712935761501 94.039 0.46835 93.619 93.37 93.838 -0.42044 55 24 3 0 0 0 0.047196 2 51408 51305;51408 46.021 24.274 1 4299600 50460 2012 34117 34897 58717;58718 58718 -0.015056695135399423 QPSDLIFEF 9 Unmodified _QPSDLIFEF_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2725219726562 2 548.27149 1094.52843 1.0473 0.00057423 1.2351 0.00067719 2.2825 0.0012514 548.27220157006 100.01 0.19798 93.834 93.74 93.938 -6.1757 35 13 3 0 0 0 0.16226 1 66778 66778 26.884 0 1 94772000 50461 2012 34117 34897 58719 58719 -0.015056695135399423 QPSENLISY 9 Unmodified _QPSENLISY_ 0 0 0 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 ENSG00000139687|ENST00000267163|RB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7591552734375 2 525.758746 1049.50294 0.84811 0.0004459 -0.34904 -0.00018351 0.49907 0.00026239 525.758447674568 49.718 0.52533 49.718 49.441 49.966 0 75 23 5 0 0 0 0.047196 2 27336 27336;27440 46.021 16.939 1 29316000 50462 5179 34118 34898 58720;58721 58720 -0.01983144035943951 QPSEQELLF 9 Unmodified _QPSEQELLF_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4 ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7744140625 2 545.774396 1089.53424 0.39509 0.00021563 -2.1735 -0.0011862 -1.7784 -0.0009706 545.7729094928515 67.903 0.50756 67.903 67.697 68.204 0 57 24 3 0 0 0 0.022193 1 37909 37909 61.357 31.133 1 2200100 50463 970 34119 34899 58722 58722 -0.006945710018726459 QPSFPTPQL 9 Unmodified _QPSFPTPQL_ 0 0 0 nc|ENSG00000140320|Q8TBE0-3|BAHD1;nc|ENSG00000140320|Q8TBE0-2|BAHD1;ENSG00000140320|ENST00000416165|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 nc|ENSG00000140320|Q8TBE0-3|BAHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7658386230469 2 507.766374 1013.5182 NaN NaN NaN NaN NaN NaN NaN 66.152 1 65.669 65.169 66.169 -0.48323 0 0 0 0.12337 1 36115 36115 39.957 7.6518 1 50464 5222 34120 34900 58723 58723 0.01197767551900597 QPSKYHFL 8 Unmodified _QPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2688903808594 2 510.269084 1018.52362 -0.23164 -0.0001182 -0.72955 -0.00037227 -0.96119 -0.00049047 510.26869079825366 38.988 0.27438 38.701 38.562 38.836 -0.28687 25 11 3 0 0 0 0.21583 1 20555 20555 67.344 7.5486 1 5962500 50465 8678 34121 34901 58724 58724 0.015094911343794593 QPSKYHFL 8 Unmodified _QPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2694396972656 2 510.269084 1018.52362 0.40944 0.00020892 -0.59191 -0.00030204 -0.18247 -9.3111E-05 510.26855376038094 38.556 0.26318 38.573 38.46 38.724 0.01704 28 12 3 0 0 0 0.36356 1 20502 20502 48.346 14.159 1 7227700 50466 8678 34121 34901 58725 58725 0.015094911343794593 QPSLKEELV 9 Unmodified _QPSLKEELV_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH REV__ENSG00000181523|ENST00000326317|SGSH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8184814453125 2 521.792589 1041.57063 0.28988 0.00015126 -0.15462 -8.0682E-05 0.13526 7.0576E-05 521.7911765678003 67.421 0.40974 67.44 67.143 67.553 0.018036 28 20 2 0 0 0 0.17718 1 36907 36907 20.454 0 1 1629500 + 50467 23209 34122 34902 58726 58726 0.05150305894835583 QPSMGSRHWT 10 Unmodified _QPSMGSRHWT_ 0 0 0 ENST00000416256.5_2_14:21955709-21955796:+|nuORF ENST00000416256.5_2_14:21955709-21955796:+|nuORF ENST00000416256.5_2_14:21955709-21955796:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7747802734375 2 593.774739 1185.53493 -0.59369 -0.00035252 -0.72701 -0.00043168 -1.3207 -0.0007842 593.7744623831902 26.949 0.23007 26.949 26.803 27.033 0 18 10 3 0 0 0 0.69917 1 13841 13841 2.9952 0 1 1088800 50468 13038 34123 34903 58727 58727 -0.0504205483377973 QPSPARAPAEL 11 Unmodified _QPSPARAPAEL_ 0 0 0 ENSG00000141682|ENST00000316660|PMAIP1 ENSG00000141682|ENST00000316660|PMAIP1 ENSG00000141682|ENST00000316660|PMAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8065795898438 2 568.806562 1135.59857 -0.5556 -0.00031603 0.95353 0.00054237 0.39792 0.00022634 568.8069681875494 32.087 0.28374 32.087 31.92 32.204 0 31 13 3 0 0 0 0.22582 1 16701 16701 30.703 14.554 1 5530400 50469 5366 34124 34904 58728 58728 0.03619628874935188 QPSPIVPAL 9 Unmodified _QPSPIVPAL_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1;ENST00000521168.5_1_8:68070723-68107652:+|nuORF nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2738647460938 2 461.273835 920.533118 0.40029 0.00018465 0.39834 0.00018375 0.79864 0.00036839 461.27408958569305 68.287 0.30489 67.807 67.638 67.943 -0.48071 24 13 2 0 0 0 0.14602 1 37289 37289 28.487 0 1 1096200 50470 2185 34125 34905 58729 58729 0.06967259419900529 QPSPQQDVY 9 Unmodified _QPSPQQDVY_ 0 0 0 ARID1A-WDTC1|1|fusion;ARID1A|p.S1930*|1|0.47|ENSG00000117713|chr1:26779687-26779687|C/-|frameshift_variant;ARID1A|p.G1926Efs*30|1|0.23|ENSG00000117713|chr1:26779674-26779674|G/-|frameshift_variant;nc|ENSG00000117713|O14497-3|ARID1A;ARID1A|p.C2276Ffs*7|1|0.08|ENSG00000117713|chr1:26780721-26780722|-/TT|frameshift_variant;ENSG00000117713|ENST00000324856|ARID1A ARID1A-WDTC1|1|fusion;nc|ENSG00000117713|O14497-3|ARID1A ARID1A-WDTC1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2471313476562 2 531.248546 1060.48254 -0.40762 -0.00021655 3.298 0.0017521 2.8904 0.0015355 531.2500789638566 28.556 0.16098 28.556 28.418 28.579 0 15 9 2 0 0 0 0.0082353 1 14737 14737 96.111 41.337 1 5267400 50471 36;37 34126 34906 58730 58730 -0.04528314695744484 QPSPSPQSY 9 Unmodified _QPSPSPQSY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7318115234375 2 495.729989 989.445425 -0.31692 -0.00015711 2.5123 0.0012454 2.1954 0.0010883 495.73105522408997 25.47 0.35073 25.47 25.283 25.634 0 36 16 3 0 0 0 0.018301 1 13032 13032 65.235 9.058 1 2041800 50472 9785 34127 34907 58731 58731 -0.049719862415145144 QPSRAVYIF 9 Unmodified _QPSRAVYIF_ 0 0 0 nc|ENSG00000133433|P0CG29|GSTT2;ENSG00000133433|ENST00000290765|GSTT2B nc|ENSG00000133433|P0CG29|GSTT2 nc|ENSG00000133433|P0CG29|GSTT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7948608398438 2 540.795466 1079.57638 0.22258 0.00012037 -0.945 -0.00051105 -0.72242 -0.00039068 540.7946747104314 54.611 0.26157 54.544 54.402 54.663 -0.066936 18 12 2 0 0 0 0.044011 1 29680 29680 47.749 13.646 1 2704800 50473 4515 34128 34908 58732 58732 0.039774491971684256 QPSTIATSM 9 Oxidation (M) _QPSTIATSM(Oxidation (M))_ QPSTIATSM(1) QPSTIATSM(55) 0 0 1 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2261657714844 2 476.226225 950.437897 -0.25012 -0.00011911 -0.4179 -0.00019902 -0.66802 -0.00031813 476.2262058512166 20.647 0.89412 20.647 20.049 20.943 0 273 102 4 0 0 0 0.031062 2 10472 10275;10472 54.774 14.294 1 22552000 50474 10697 34129 34909 58733;58734 58734 1714 -0.03930461833442678 QPSTIATSM 9 Oxidation (M) _QPSTIATSM(Oxidation (M))_ QPSTIATSM(1) QPSTIATSM(100) 0 0 1 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4462280273438 1 951.445173 950.437897 -0.049557 -4.7151E-05 -0.15472 -0.00014721 -0.20428 -0.00019436 951.445374631007 24.195 0.34927 21.368 21.196 21.545 -2.8273 25 19 2 0 0 0 0.0087873 1 13097 13097 103.35 41.996 1 3438300 50475 10697 34129 34909 58735 58735 1714 -0.03930461833442678 QPSTIATSM 9 Unmodified _QPSTIATSM_ 0 0 0 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2297058105469 2 468.228768 934.442982 0.59737 0.00027971 -0.90962 -0.00042591 -0.31225 -0.0001462 468.22833623290654 36.059 0.49185 36.059 35.896 36.388 0 45 24 3 0 0 0 0.047196 1 19068 19068 46.021 9.9768 1 16510000 50476 10697 34129 34910 58736 58736 -0.026861579708338468 QPSTIATSM 9 Unmodified _QPSTIATSM_ 0 0 0 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.449951171875 1 935.450259 934.442982 0.38376 0.00035899 -0.061661 -5.7681E-05 0.3221 0.00030131 935.4502725833602 36.043 0.21144 36.043 35.937 36.148 0 16 10 2 0 0 0 0.013041 1 19082 19082 71.922 29.828 1 2802500 50477 10697 34129 34910 58737 58737 -0.026861579708338468 QPSTIATSM 9 Unmodified _QPSTIATSM_ 0 0 0 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 935.4503173828125 1 935.450259 934.442982 0.67884 0.00063502 -0.88919 -0.00083179 -0.21035 -0.00019677 935.4496288112379 42.254 0.56011 37.57 37.234 37.794 -4.6846 86 35 3 0 0 0 0.00065891 3 25448 25318;25448;25589 142.08 85.903 1 58203000 50478 10697 34129 34910 58738;58739;58740 58739 -0.026861579708338468 QPSTIATSM 9 Unmodified _QPSTIATSM_ 0 0 0 nc|ENSG00000242372|P56537-2|EIF6;ENSG00000242372|ENST00000374450|EIF6 nc|ENSG00000242372|P56537-2|EIF6 nc|ENSG00000242372|P56537-2|EIF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2290344238281 2 468.228768 934.442982 0.66287 0.00031037 -0.40852 -0.00019128 0.25434 0.00011909 468.2286276933204 42.249 0.79086 37.565 37.067 37.858 -4.6846 141 51 4 0 0 0 0.022193 3 25495 25353;25495;25623 61.357 29.293 1 342690000 50479 10697 34129 34910 58741;58742;58743 58742 -0.026861579708338468 QPSVGTEIF 9 Unmodified _QPSVGTEIF_ 0 0 0 nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;ENST00000434910.1_1_20:6194638-6195010:+|nuORF nc|ENSG00000271793|O60506-2|SYNCRIP nc|ENSG00000271793|O60506-2|SYNCRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2515258789062 2 489.250557 976.486562 0.29733 0.00014547 2.3849 0.0011668 2.6822 0.0013123 489.25212687620365 59.235 0.42788 59.235 58.902 59.329 0 31 18 2 0 0 0 0.05447 1 32915 32915 43.858 7.8141 1 1828800 50480 4687 34130 34911 58744 58744 -0.00262225202038735 QPSWDKWS 8 Unmodified _QPSWDKWS_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MSMS AL20221201_MKP_PDAC_01 4 517.2408447265625 2 517.240524 1032.46649 NaN NaN NaN NaN NaN NaN NaN 82.903 1 76.727 76.227 77.227 -6.1757 0 0 0 0.4637 1 54485 54485 44.407 13.77 1 + 50481 18104 34131 34912 58745 58745 -0.04843976142001338 QPSYRKYRQ 9 Unmodified _QPSYRKYRQ_ 0 0 0 REV__ENSG00000182348|ENST00000333190|ZNF804B REV__ENSG00000182348|ENST00000333190|ZNF804B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.326171875 2 613.325454 1224.63635 NaN NaN NaN NaN NaN NaN NaN 79.801 1 79.311 78.811 79.811 -0.48932 0 0 0 0.83049 1 43710 43710 3.9444 0.3479 1 + 50482 23266 34132 34913 58746 58746 0.03302139860420539 QPTALVPAL 9 Unmodified _QPTALVPAL_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MSMS AL20221201_MKP_PDAC_01 4 455.2741088867188 2 455.273835 908.533118 NaN NaN NaN NaN NaN NaN NaN 76.76 1 70.584 70.084 71.084 -6.1757 0 0 0 0.17247 1 50208 50208 34.102 3.8776 1 50483 4587 34133 34914 58747 58747 0.07519259419893842 QPTALVPAL 9 Unmodified _QPTALVPAL_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MSMS AL20221201_MKP_PDAC_01 4 455.2741088867188 2 455.273835 908.533118 NaN NaN NaN NaN NaN NaN NaN 76.983 1 70.807 70.307 71.307 -6.1757 0 0 0 0.020219 1 50351 50351 78.149 29.804 1 50484 4587 34133 34914 58748 58748 0.07519259419893842 QPTDLQLLF 9 Unmodified _QPTDLQLLF_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;nc|ENSG00000166912|Q9NXD2-2|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7948608398438 2 537.795132 1073.57571 0.32198 0.00017316 0.65054 0.00034986 0.97252 0.00052302 537.7951434798479 91.127 0.38416 90.632 90.419 90.803 -0.49458 50 18 4 0 0 0 0.03568 1 49751 49751 52.268 4.5197 1 2872100 50485 7550 34134 34915 58749 58749 0.0418660975747116 QPTDTNVIRY 10 Unmodified _QPTDTNVIRY_ 0 0 0 ENSG00000133985|ENST00000256367|TTC9 ENSG00000133985|ENST00000256367|TTC9 ENSG00000133985|ENST00000256367|TTC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.8088989257812 2 603.809302 1205.60405 0.011365 6.8623E-06 -0.11365 -6.8622E-05 -0.10228 -6.176E-05 603.8094842304937 36.072 0.39053 36.072 35.878 36.269 0 57 19 4 0 0 0 0.002045 1 19050 19050 114.2 86.978 1 20354000 50486 4547 34135 34916 58750 58750 0.009473076667518399 QPTDTNVIRY 10 Unmodified _QPTDTNVIRY_ 0 0 0 ENSG00000133985|ENST00000256367|TTC9 ENSG00000133985|ENST00000256367|TTC9 ENSG00000133985|ENST00000256367|TTC9 MSMS AL20221201_MKP_PDAC_01 4 603.8114624023438 2 603.809302 1205.60405 NaN NaN NaN NaN NaN NaN NaN 41.074 1 36.466 35.966 36.966 -4.6079 0 0 0 0.0012493 1 24614 24614 125.53 93.492 1 50487 4547 34135 34916 58751 58751 0.009473076667518399 QPTEFFQSL 9 Unmodified _QPTEFFQSL_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.770751953125 2 548.769114 1095.52368 0.6584 0.00036131 -0.90277 -0.00049541 -0.24437 -0.0001341 548.768928510282 73.931 0.25517 73.931 73.738 73.994 0 17 10 2 0 0 0 0.30562 1 41170 41170 16.942 4.4107 1 435910 50488 10257 34136 34917 58752 58752 -0.02026553656287433 QPTEFFQSL 9 Unmodified _QPTEFFQSL_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.76708984375 2 548.769114 1095.52368 0.67131 0.00036839 -1.7137 -0.00094045 -1.0424 -0.00057205 548.7676709143146 74.412 0.30176 73.936 73.741 74.042 -0.47588 32 12 3 0 0 0 0.16226 1 40683 40683 26.884 5.3467 1 1923700 50489 10257 34136 34917 58753 58753 -0.02026553656287433 QPTEVVNIL 9 Unmodified _QPTEVVNIL_ 0 0 0 ENST00000602534.1_1_13:39603416-39611379:-|nuORF;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1 ENST00000602534.1_1_13:39603416-39611379:-|nuORF ENST00000602534.1_1_13:39603416-39611379:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7873229980469 2 506.787307 1011.56006 0.57343 0.00029061 -0.4919 -0.00024929 0.081532 4.1319E-05 506.7870916163586 67.934 0.33329 67.934 67.743 68.076 0 43 16 3 0 0 0 0.022193 1 37854 37854 61.357 0 1 4026300 50490 3528 34137 34918 58754 58754 0.05474323240423473 QPTEVVNIL 9 Unmodified _QPTEVVNIL_ 0 0 0 ENST00000602534.1_1_13:39603416-39611379:-|nuORF;nc|ENSG00000120685|Q86XN7-2|PROSER1;ENSG00000120685|ENST00000352251|PROSER1 ENST00000602534.1_1_13:39603416-39611379:-|nuORF ENST00000602534.1_1_13:39603416-39611379:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.787307 1011.56006 0.1422 7.2065E-05 0.5644 0.00028603 0.7066 0.0003581 506.7879437340603 68.353 0.28468 67.872 67.725 68.01 -0.48071 -0.03095 0.00089767 NaN 61.357 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1575700 50491 3528 34137 34918 0.05474323240423473 QPTHPIRLGL 10 Unmodified _QPTHPIRLGL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8934326171875 3 377.892619 1130.65603 0.16995 6.4222E-05 0.75785 0.00028639 0.9278 0.00035061 377.8928002311878 41.037 0.30949 41.035 40.891 41.2 -0.0017929 31 14 3 0 0 0 0.38026 1 21896 21896 22.775 14.331 1 4208600 50492 4588;4050;7941 34138 34919 58755 58755 0.09592515871190699 QPTHPIRLGL 10 Unmodified _QPTHPIRLGL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENST00000517727.5_1_8:101936341-101962760:-|nuORF;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000445359.1_1_9:38643302-38643692:+|nuORF;ENST00000480304.5_1_8:101936173-101961117:-|nuORF ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.89404296875 3 377.892619 1130.65603 0.90767 0.000343 0.11869 4.4853E-05 1.0264 0.00038785 377.89260296330843 45.444 0.23002 40.489 40.311 40.541 -4.9549 22 15 2 0 0 0 0.41271 1 27867 27867 20.871 9.3533 1 10576000 50493 4588;4050;7941 34138 34919 58756 58756 0.09592515871190699 QPTHWKITY 9 Unmodified _QPTHWKITY_ 0 0 0 ENST00000471540.5_1_21:46685399-46685959:-|nuORF;ENST00000331343.11_1_21:46685399-46685879:-|nuORF;ENSG00000186866|ENST00000349485|POFUT2 ENST00000471540.5_1_21:46685399-46685959:-|nuORF ENST00000471540.5_1_21:46685399-46685959:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8731689453125 3 391.873224 1172.59784 -0.009042 -3.5433E-06 -0.18515 -7.2555E-05 -0.19419 -7.6098E-05 391.8730096146229 38.403 0.21222 38.42 38.291 38.503 0.01704 20 9 3 0 0 0 0.35911 1 20406 20406 14.405 10.809 1 3188400 50494 9513 34139 34920 58757 58757 0.01844834225903469 QPTIERVAL 9 Unmodified _QPTIERVAL_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.8012084960938 2 513.800749 1025.58694 NaN NaN NaN NaN NaN NaN NaN 46.635 1 46.635 46.135 47.135 0 0 0 0 0.71962 1 25494 25494 8.7454 0.15213 1 50495 7074 34140 34921 58758 58758 0.07517431851601941 QPTMVHDGSL 10 Unmodified _QPTMVHDGSL_ 0 0 0 nc|ENSG00000150967|Q9NP78-6|ABCB9;nc|ENSG00000150967|Q9NP78-5|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9;nc|ENSG00000150967|Q9NP78-3|ABCB9;ENST00000538895.5_1_12:123424612-123444782:-|nuORF nc|ENSG00000150967|Q9NP78-6|ABCB9 nc|ENSG00000150967|Q9NP78-6|ABCB9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2774658203125 2 542.758223 1083.50189 -0.20992 -0.00011393 -1.9902 -0.0010802 -2.2001 -0.0011941 543.2597783139719 41.321 0.10305 41.018 40.964 41.067 -0.30304 6 4 2 0 0 0 0.23325 1 21882 21882 6.2058 0 1 1318800 50496 6081 34141 34922 58759 58759 -0.03651681676501539 QPTNVSEAF 9 Unmodified _QPTNVSEAF_ 0 0 0 nc|ENSG00000177125|Q8NCN2|ZBTB34;ENSG00000177125|ENST00000319119|ZBTB34 nc|ENSG00000177125|Q8NCN2|ZBTB34 nc|ENSG00000177125|Q8NCN2|ZBTB34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7379760742188 2 496.737814 991.461075 -0.37688 -0.00018721 0.47579 0.00023634 0.098918 4.9136E-05 496.7385957089533 41.171 0.23605 41.171 41.045 41.281 0 19 11 2 0 0 0 0.06294 1 22174 22174 41.84 18.691 1 2880200 50497 8659 34142 34923 58760 58760 -0.03499699724477523 QPTPAMAKY 9 Unmodified _QPTPAMAKY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7544250488281 2 503.754953 1005.49535 0.75714 0.00038141 -0.082545 -4.1582E-05 0.6746 0.00033983 503.7548794854107 31.905 0.25287 28.209 28.086 28.339 -3.6958 24 13 2 0 0 0 0.011968 1 18107 18107 74.929 33.089 1 16397000 50498 8657 34143 34924 58761 58761 -0.007175748372219459 QPTPEDVNHPM 11 Unmodified _QPTPEDVNHPM_ 0 0 0 REV__ENSG00000188738|ENST00000424728|FSIP2 REV__ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.1920776367188 3 422.192405 1263.55539 -0.62498 -0.00026386 0.23863 0.00010075 -0.38635 -0.00016312 422.19258728245694 15.729 0.35845 15.729 15.508 15.866 0 260 90 4 0 0 0 0.71036 1 7580 7580 1.3296 0.11481 1 3378700 + 50499 23727 34144 34925 58762 58762 -0.0658492896466214 QPTQLVNF 8 Unmodified _QPTQLVNF_ 0 0 0 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7529602050781 2 473.753267 945.491981 0.30259 0.00014335 3.1991 0.0015156 3.5017 0.0016589 473.75309390188 60.012 0.38037 59.522 59.272 59.652 -0.49079 24 18 2 0 0 0 0.25522 2 32600 32600;32713 61.357 9.0891 1 11947000 50500 65 34145 34926 58763;58764 58763 0.017054983804200674 QPTQLVNF 8 Unmodified _QPTQLVNF_ 0 0 0 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 chr1:223622900-223623585|45|12.84|0.53|4.6|-|0|CAPN8,None|2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7533569335938 2 473.753267 945.491981 0.65222 0.00030899 1.0182 0.00048238 1.6704 0.00079137 473.7530291966241 67.002 0.4917 60.826 60.599 61.091 -6.1757 39 27 2 0 0 0 0.21098 2 43553 43553;43688 68.081 26.241 1 28049000 50501 65 34145 34926 58765;58766 58765 0.017054983804200674 QPTQSMMTFA 10 Unmodified _QPTQSMMTFA_ 0 0 0 ENST00000311601.5_1_5:171764926-171765073:-|nuORF ENST00000311601.5_1_5:171764926-171765073:-|nuORF ENST00000311601.5_1_5:171764926-171765073:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2553100585938 2 571.254459 1140.49437 0.23305 0.00013313 -0.20454 -0.00011685 0.028512 1.6288E-05 571.2549155513901 49.006 0.25414 49.006 48.874 49.128 0 25 12 3 0 0 0 0.56348 1 26947 26947 13.042 5.7532 1 4424900 50502 11694 34146 34927 58767 58767 -0.07026157268433053 QPTQSMMTFA 10 Unmodified _QPTQSMMTFA_ 0 0 0 ENST00000311601.5_1_5:171764926-171765073:-|nuORF ENST00000311601.5_1_5:171764926-171765073:-|nuORF ENST00000311601.5_1_5:171764926-171765073:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.254459 1140.49437 0.78687 0.0004495 -0.018559 -1.0602E-05 0.76831 0.0004389 571.2545278683899 49.374 0.17482 48.982 48.882 49.057 -0.3923 -0.011985 0.0001434 NaN 13.042 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1616300 50503 11694 34146 34927 -0.07026157268433053 QPTSTIILH 9 Unmodified _QPTSTIILH_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1;ENST00000503921.5_1_5:96133011-96143586:-|nuORF ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2879943847656 2 505.287474 1008.5604 0.66955 0.00033832 -0.54069 -0.00027321 0.12886 6.511E-05 505.2871803778105 43.22 0.40633 38.455 38.243 38.65 -4.7648 50 28 2 0 0 0 0.14602 1 26174 26174 28.487 19.139 1 28367000 50504 7176 34147 34928 58768 58768 0.056457429602915 QPTVRITEL 9 Unmodified _QPTVRITEL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8057861328125 2 528.806031 1055.59751 0.15102 7.986E-05 -0.20996 -0.00011103 -0.058944 -3.117E-05 528.8058674918019 48.954 0.36686 48.954 48.761 49.128 0 44 17 3 0 0 0 0.040733 1 26842 26842 53.833 6.0841 1 18132000 50505 2089 34148 34929 58769 58769 0.07193414506014051 QPTVRITEL 9 Unmodified _QPTVRITEL_ 0 0 0 ENSG00000102978|ENST00000219252|POLR2C;ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF ENSG00000102978|ENST00000219252|POLR2C ENSG00000102978|ENST00000219252|POLR2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8069458007812 2 528.806031 1055.59751 0.42564 0.00022508 0.4145 0.00021919 0.84013 0.00044427 528.806242859237 49.225 0.34906 48.854 48.635 48.984 -0.37172 37 16 3 0 0 0 0.13639 1 26404 26404 31.268 8.1199 1 4676800 50506 2089 34148 34929 58770 58770 0.07193414506014051 QPTVSYFL 8 Unmodified _QPTVSYFL_ 0 0 0 ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11;nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11 ENST00000524576.5_1_11:66203480-66233392:-|nuORF ENST00000524576.5_1_11:66203480-66233392:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 955.4664916992188 1 954.49311 953.485833 0.32244 0.00030777 -0.34601 -0.00033027 -0.023573 -2.25E-05 954.4926661744101 67.225 0.3924 66.742 66.547 66.939 -0.48219 39 17 3 0 0 0 0.76266 1 36658 36658 11.64 3.7301 1 5998500 50507 8433 34149 34930 58771 58771 0.007229801489074816 QPTVTIKVY 9 Unmodified _QPTVTIKVY_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.8056030273438 2 524.8055 1047.59645 0.86505 0.00045398 -0.35681 -0.00018726 0.50823 0.00026672 524.805261667764 47.232 0.35049 47.199 47.016 47.366 -0.033417 31 17 3 0 0 0 0.078314 1 25422 25422 38.176 12.776 1 4269500 50508 673 34150 34931 58772 58772 0.07455200137133033 QPTVTIKVY 9 Unmodified _QPTVTIKVY_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8062133789062 2 524.8055 1047.59645 1.0911 0.00057264 0.80914 0.00042464 1.9003 0.00099728 524.8056772517338 52.855 0.51162 47.05 46.822 47.334 -5.8042 80 28 4 0 0 0 0.10247 1 33414 33414 32.786 3.7041 1 165010000 50509 673 34150 34931 58773 58773 0.07455200137133033 QPTYVQALF 9 Unmodified _QPTYVQALF_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.2513427734375 2 533.782025 1065.5495 0.96259 0.00051381 -1.3899 -0.00074191 -0.42733 -0.0002281 533.7824045631626 83.612 0.44952 77.436 77.212 77.662 -6.1757 42 23 3 0 0 0 0.17275 1 54991 54991 21.747 0 1 10933000 50510 8714 34151 34932 58774 58774 0.019343405859899576 QPTYYTIII 9 Unmodified _QPTYYTIII_ 0 0 0 REV__ENSG00000148218|ENST00000409155|ALAD REV__ENSG00000148218|ENST00000409155|ALAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.30712890625 2 556.305332 1110.59611 0.45247 0.00025171 1.64 0.00091236 2.0925 0.0011641 556.3062853344921 78.448 0.23666 78.448 78.359 78.595 0 16 11 2 0 0 0 0.5029 1 43609 43609 7.2892 1.5288 1 390550 + 50511 20934 34152 34933 58775 58775 0.0452378041729844 QPTYYTIII 9 Unmodified _QPTYYTIII_ 0 0 0 REV__ENSG00000148218|ENST00000409155|ALAD REV__ENSG00000148218|ENST00000409155|ALAD MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3059692382812 2 556.305332 1110.59611 1.2367 0.00068798 -0.37403 -0.00020807 0.86267 0.00047991 556.3052842708839 86.919 0.76733 80.743 80.379 81.146 -6.1757 143 41 4 0 0 0 0.024882 1 57397 57397 58.679 2.5018 1 231770000 + 50512 20934 34152 34933 58776 58776 0.0452378041729844 QPVALHRNVY 10 Unmodified _QPVALHRNVY_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF;ENST00000481343.1_1_3:183525829-183527073:+|nuORF ENSG00000163872|ENST00000305135|YEATS2;ENST00000481343.1_1_3:183525829-183527073:+|nuORF ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5569458007812 3 399.556007 1195.64619 0.87495 0.00034959 1.2542 0.00050112 2.1291 0.00085071 399.55683346937036 28.768 0.21961 25.62 25.458 25.677 -3.1482 17 10 2 0 0 0 0.45406 1 16100 16100 18.721 6.5465 1 26653000 50513 7087;14081 34153 34934 58777 58777 0.05619327865792911 QPVDPKRHGQL 11 Unmodified _QPVDPKRHGQL_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000484717.5_1_3:38035793-38043423:+|nuORF;ENST00000486616.5_1_3:38042946-38043150:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.5704650878906 3 425.570316 1273.68912 -0.58435 -0.00024868 0.70722 0.00030097 0.12287 5.2289E-05 425.5705590002978 16.192 0.13284 16.192 16.119 16.252 0 79 36 3 0 0 0 0.71938 1 7855 7855 2.4348 1.22 1 1349800 50514 4784 34154 34935 58778 58778 0.06322097923225556 QPVDPKRHGQL 11 Unmodified _QPVDPKRHGQL_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000484717.5_1_3:38035793-38043423:+|nuORF;ENST00000486616.5_1_3:38042946-38043150:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.5707092285156 3 425.570316 1273.68912 0.57656 0.00024537 0.18062 7.6865E-05 0.75718 0.00032223 425.5704264732111 17.248 0.25023 14.661 14.531 14.781 -2.5866 106 39 3 0 0 0 0.50268 1 8989 8989 16.275 12.158 1 17889000 50515 4784 34154 34935 58779 58779 0.06322097923225556 QPVDWFVVY 9 Unmodified _QPVDWFVVY_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7907104492188 2 576.78985 1151.56515 0.48682 0.00028079 2.2078 0.0012734 2.6946 0.0015542 576.790876219955 94.918 0.33831 94.55 94.359 94.698 -0.36814 55 16 4 0 0 0 0.10734 2 51801 51801;51892 32.305 15.363 1 1854500 50516 2340 34155 34936 58780;58781 58780 -0.004573728969489821 QPVDWFVVY 9 Unmodified _QPVDWFVVY_ 0 0 0 ENSG00000105612|ENST00000222219|DNASE2;nc|ENSG00000105612|O00115-2|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 ENSG00000105612|ENST00000222219|DNASE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7918701171875 2 576.78985 1151.56515 2.2082 0.0012737 1.2256 0.00070691 3.4338 0.0019806 576.7906471108023 94.499 0.29568 94.513 94.323 94.618 0.014252 18 10 2 0 0 0 0.07916 1 52518 52518 37.974 16.227 1 2242200 50517 2340 34155 34936 58782 58782 -0.004573728969489821 QPVEFNHAINY 11 Unmodified _QPVEFNHAINY_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.32275390625 2 666.322576 1330.6306 -0.028793 -1.9186E-05 -0.22553 -0.00015028 -0.25433 -0.00016946 666.3223966867217 47.113 0.21335 47.113 46.999 47.212 0 16 9 2 0 0 0 0.56638 1 25783 25783 13.042 3.6593 1 4015800 50518 7870 34156 34937 58783 58783 -0.021490034418775394 QPVEFNHAINY 11 Unmodified _QPVEFNHAINY_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.3222045898438 2 666.322576 1330.6306 0.65824 0.0004386 -0.50893 -0.00033911 0.14931 9.9491E-05 666.3219583483275 47.454 0.22255 47.101 46.98 47.203 -0.3526 25 10 3 0 0 0 0.58219 1 25420 25420 12.241 5.5175 1 7297600 50519 7870 34156 34937 58784 58784 -0.021490034418775394 QPVEFNHAINY 11 Unmodified _QPVEFNHAINY_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 666.322265625 2 666.322576 1330.6306 0.41344 0.00027549 -1.094 -0.00072898 -0.68059 -0.00045349 666.3226968039822 53.117 0.29372 47.313 47.159 47.453 -5.8042 36 16 3 0 0 0 4.588799999999999E-21 1 33489 33489 151.48 109.52 1 33371000 50520 7870 34156 34937 58785 58785 -0.021490034418775394 QPVEPLPGF 9 Unmodified _QPVEPLPGF_ 0 0 0 ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2614135742188 2 492.263468 982.512382 0.23395 0.00011517 -1.3674 -0.00067313 -1.1335 -0.00055797 492.2625892678253 69.375 0.33173 69.375 69.203 69.534 0 34 14 3 0 0 0 0.010818 1 38651 38651 78.149 20.678 1 3434300 50521 6147 34157 34938 58786 58786 0.02042669040235978 QPVEPLPGF 9 Unmodified _QPVEPLPGF_ 0 0 0 ENSG00000151806|ENST00000281543|GUF1;ENST00000506793.5_1_4:44680541-44700695:+|nuORF ENSG00000151806|ENST00000281543|GUF1 ENSG00000151806|ENST00000281543|GUF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2654418945312 2 492.263468 982.512382 0.12772 6.2871E-05 0.49427 0.00024331 0.62199 0.00030618 492.26356854693114 69.951 0.22498 69.472 69.29 69.515 -0.47903 13 9 2 0 0 0 0.14602 1 38221 38221 28.487 8.0332 1 1266400 50522 6147 34157 34938 58787 58787 0.02042669040235978 QPVGSSVIF 9 Unmodified _QPVGSSVIF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 933.5069580078125 1 933.504009 932.496732 0.44429 0.00041474 0.5279 0.0004928 0.97219 0.00090754 933.5046863104461 61.994 0.29402 61.506 61.366 61.66 -0.48764 22 13 2 0 0 0 0.06294 2 33731 33731;33838 41.84 9.5341 1 3014600 50523 1378 34158 34939 58788;58789 58788 0.02778382523183609 QPVGSSVIF 9 Unmodified _QPVGSSVIF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2565307617188 2 467.255643 932.496732 0.45882 0.00021439 0.18403 8.5989E-05 0.64285 0.00030038 467.2558828896549 61.99 0.35844 61.503 61.345 61.704 -0.48764 26 16 2 0 0 0 0.10734 1 33735 33735 32.305 5.4218 1 2650200 50524 1378 34158 34939 58790 58790 0.02778382523183609 QPVGSSVIF 9 Unmodified _QPVGSSVIF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2546997070312 2 467.255643 932.496732 0.95285 0.00044522 0.08499 3.9712E-05 1.0378 0.00048494 467.2554957124934 68.895 0.33197 62.719 62.537 62.869 -6.1757 31 17 2 0 0 0 0.032796 1 44953 44953 53.833 15.859 1 16062000 50525 1378 34158 34939 58791 58791 0.02778382523183609 QPVHTVIL 8 Unmodified _QPVHTVIL_ 0 0 0 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 ENSG00000149654|ENST00000537909|CDH22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.7742004394531 2 453.774003 905.533452 0.25042 0.00011363 -0.03915 -1.7765E-05 0.21127 9.5869E-05 453.77400541799835 53.097 0.20771 52.645 52.535 52.742 -0.45173 16 10 2 0 0 0 0.64853 1 28746 28746 21.747 2.3076 1 1334600 50526 6030 34159 34940 58792 58792 0.076906791397505 QPVKSFPTM 9 Oxidation (M) _QPVKSFPTM(Oxidation (M))_ QPVKSFPTM(1) QPVKSFPTM(60) 0 0 1 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7687377929688 2 525.76806 1049.52157 0.38194 0.00020081 -0.65309 -0.00034337 -0.27115 -0.00014256 525.7679563662057 27.293 0.32578 27.247 27.107 27.433 -0.046408 39 15 3 0 0 0 0.023481 1 14020 14020 60.074 36.053 1 17058000 50527 7270 34160 34941 58793 58793 1259 -0.001213056657661582 QPVKSFPTM 9 Oxidation (M) _QPVKSFPTM(Oxidation (M))_ QPVKSFPTM(1) QPVKSFPTM(60) 0 0 1 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7683715820312 2 525.76806 1049.52157 1.0702 0.00056269 -0.51835 -0.00027253 0.55188 0.00029016 525.7680882671797 30.844 0.45001 27.347 27.07 27.52 -3.497 37 20 3 0 0 0 0.023481 1 17364 17364 60.074 32.445 1 100630000 50528 7270 34160 34941 58794 58794 1259 -0.001213056657661582 QPVKSFPTM 9 Unmodified _QPVKSFPTM_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7706298828125 2 517.770603 1033.52665 0.51396 0.00026611 0.29895 0.00015479 0.8129 0.0004209 517.770705111031 46.389 0.41283 41.309 41.009 41.422 -5.0805 82 29 4 0 0 0 0.06294 2 28622 28475;28622 41.84 17.819 1 179610000 50529 7270 34160 34942 58795;58796 58796 0.011229981968654101 QPVKVLGENY 10 Unmodified _QPVKVLGENY_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.811767578125 2 573.811313 1145.60807 0.63356 0.00036354 -0.061209 -3.5123E-05 0.57235 0.00032842 573.8112971785415 44.821 0.51846 39.969 39.73 40.249 -4.852 112 39 4 0 0 0 0.65471 1 27531 27531 8.7454 2.5396 1 160700000 50530 2616 34161 34943 58797 58797 0.04109397160482331 QPVKVRVSY 9 Unmodified _QPVKVRVSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.2124328613281 3 359.213469 1074.61858 -0.75108 -0.0002698 -0.77035 -0.00027672 -1.5214 -0.00054652 359.2130430037374 28.328 0.13147 28.328 28.271 28.402 0 10 6 2 0 0 0 0.42049 1 14640 14640 11.518 2.7725 1 1652000 50531 8403 34162 34944 58798 58798 0.08425424605570697 QPVKVRVSY 9 Unmodified _QPVKVRVSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2139282226562 3 359.213469 1074.61858 0.09979 3.5846E-05 1.2134 0.00043586 1.3132 0.00047171 359.2139721523773 28.18 0.22636 28.209 28.106 28.332 0.029564 16 8 3 0 0 0 0.19361 1 14663 14663 17.863 10.254 1 4403100 50532 8403 34162 34944 58799 58799 0.08425424605570697 QPVKVRVSY 9 Unmodified _QPVKVRVSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2142944335938 3 359.213469 1074.61858 1.2664 0.00045491 -0.10893 -3.9128E-05 1.1575 0.00041578 359.21343289908083 31.742 0.31828 28.046 27.908 28.226 -3.6958 42 17 3 0 0 0 0.085319 2 18090 17962;18090 40.725 19.188 1 73432000 50533 8403 34162 34944 58800;58801 58801 0.08425424605570697 QPVKVRVSY 9 Unmodified _QPVKVRVSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3170166015625 2 538.316566 1074.61858 0.47084 0.00025346 -0.43521 -0.00023428 0.035627 1.9179E-05 538.3165452621305 31.755 0.27968 28.059 27.947 28.226 -3.6958 23 15 2 0 0 0 0.040683 1 18000 18000 49.554 21.925 1 20173000 50534 8403 34162 34944 58802 58802 0.08425424605570697 QPVLFIPDVHF 11 Unmodified _QPVLFIPDVHF_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2;ENST00000517674.5_1_8:102644467-102676686:+|nuORF;ENSG00000134317|ENST00000324907|GRHL1;nc|ENSG00000134317|Q9NZI5-2|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;ENSG00000134317|ENST00000324907|GRHL1 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3604736328125 2 656.358431 1310.70231 0.7379 0.00048433 0.89033 0.00058438 1.6282 0.0010687 656.3595294381357 99.498 0.11909 93.322 93.261 93.38 -6.1757 15 7 3 0 0 0 0.016495 1 66287 66287 75.761 61.855 1 43751000 50535 1363;4590 34163 34945 58803 58803 0.0593853598259102 QPVLKPLEY 9 Unmodified _QPVLKPLEY_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;ENST00000530174.1_1_11:65392695-65393791:+|nuORF ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.814208984375 2 543.813325 1085.6121 0.27624 0.00015022 0.19205 0.00010444 0.46829 0.00025466 543.8135817567965 55.982 0.31331 50.061 49.861 50.174 -5.9211 39 18 3 0 0 0 0.025842 1 35680 35680 57.722 34.986 1 25028000 50536 9912 34164 34946 58804 58804 0.07271486654190085 QPVLKPLEY 9 Unmodified _QPVLKPLEY_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;ENST00000530174.1_1_11:65392695-65393791:+|nuORF ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 543.813325 1085.6121 0.44736 0.00024328 -0.87237 -0.00047441 -0.42501 -0.00023113 543.812607700785 50.001 0.19241 50.001 49.883 50.075 0 -0.032769 -0.00055264 NaN 57.722 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 4429700 50537 9912 34164 34946 0.07271486654190085 QPVLKPLEY 9 Unmodified _QPVLKPLEY_ 0 0 0 ENSG00000197136|ENST00000355703|PCNX3;ENST00000530174.1_1_11:65392695-65393791:+|nuORF ENSG00000197136|ENST00000355703|PCNX3 ENSG00000197136|ENST00000355703|PCNX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.813325 1085.6121 0.63623 0.00034599 -3.1271 -0.0017006 -2.4909 -0.0013546 543.8112961615932 50.432 0.242 50.039 49.911 50.153 -0.3923 0.0057569 -0.0030049 NaN 57.722 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3585000 50538 9912 34164 34946 0.07271486654190085 QPVLSSLEY 9 Unmodified _QPVLSSLEY_ 0 0 0 ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226 ENSG00000239887|ENST00000458626|C1orf226 ENSG00000239887|ENST00000458626|C1orf226 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2718505859375 2 518.27149 1034.52843 0.74394 0.00038556 -2.4789 -0.0012847 -1.7349 -0.00089916 518.271433906931 60.411 0.509 60.411 60.137 60.646 0 69 22 4 0 0 0 0.03568 1 33675 33675 52.268 31.397 1 15220000 50539 10666 34165 34947 58805 58805 0.012543304864720994 QPVLSSLEY 9 Unmodified _QPVLSSLEY_ 0 0 0 ENSG00000239887|ENST00000458626|C1orf226;nc|nan|A1L170-2|C1orf226 ENSG00000239887|ENST00000458626|C1orf226 ENSG00000239887|ENST00000458626|C1orf226 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2705078125 2 518.27149 1034.52843 0.65456 0.00033924 -0.23442 -0.00012149 0.42014 0.00021775 518.2715187638767 68.063 0.32526 61.887 61.721 62.046 -6.1757 28 18 2 0 0 0 0.044011 2 44473 44335;44473 47.749 22.349 1 20458000 50540 10666 34165 34947 58806;58807 58807 0.012543304864720994 QPVPPYGMY 9 Oxidation (M) _QPVPPYGM(Oxidation (M))Y_ QPVPPYGM(1)Y QPVPPYGM(97)Y 0 0 1 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2470703125 2 534.24696 1066.47937 0.072515 3.8741E-05 0.044335 2.3686E-05 0.11685 6.2427E-05 534.2470870263074 44.223 0.6174 44.223 43.974 44.591 0 73 32 3 0 0 0 0.0083087 3 24043 23939;24043;24154 97.075 78.94 1 23459000 50541 3631 34166 34948 58808;58809;58810 58809 638 -0.051212810741162684 QPVPPYGMY 9 Oxidation (M) _QPVPPYGM(Oxidation (M))Y_ QPVPPYGM(1)Y QPVPPYGM(89)Y 0 0 1 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2470092773438 2 534.24696 1066.47937 -0.27163 -0.00014512 0.32348 0.00017282 0.051854 2.7703E-05 534.2470617950875 44.541 0.14403 44.225 44.164 44.308 -0.31585 13 7 2 0 0 0 0.0086179 1 23764 23764 89.427 64.753 1 9061100 50542 3631 34166 34948 58811 58811 638 -0.051212810741162684 QPVPPYGMY 9 Unmodified _QPVPPYGMY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2494506835938 2 526.249503 1050.48445 0.27761 0.00014609 0.29863 0.00015716 0.57624 0.00030325 526.2495960894544 55.58 0.64695 55.102 54.733 55.379 -0.47798 35 30 2 0 0 0 0.14602 1 30147 30147 28.487 11.545 1 1391200 50543 3631 34166 34949 58812 58812 -0.038769772115074375 QPVPPYGMY 9 Unmodified _QPVPPYGMY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2498168945312 2 526.249503 1050.48445 1.6732 0.0008805 -0.86489 -0.00045515 0.80826 0.00042535 526.249079779771 62.371 0.83611 56.195 56.021 56.857 -6.1757 95 43 3 0 0 0 0.038285 2 40302 40163;40302 50.855 20.63 1 35368000 50544 3631 34166 34949 58813;58814 58814 -0.038769772115074375 QPVPRSVL 8 Unmodified _QPVPRSVL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35 nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2715759277344 2 448.271627 894.528701 0.39801 0.00017841 0.029064 1.3028E-05 0.42707 0.00019144 448.2716622474171 35.947 0.33744 35.947 35.776 36.113 0 37 16 3 0 0 0 0.80383 1 19113 19113 4.3292 0 1 10641000 50545 972 34167 34950 58815 58815 0.07721794997007692 QPVPRSVL 8 Unmodified _QPVPRSVL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35 nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7733154296875 2 448.271627 894.528701 0.53026 0.0002377 0.099024 4.4389E-05 0.62929 0.00028209 448.271721359861 40.29 0.57775 35.761 35.52 36.097 -4.5294 109 43 3 0 0 0 0.46468 2 23898 23898;24156 38.176 6.0586 1 121820000 50546 972 34167 34950 58816;58817 58816 0.07721794997007692 QPVPVGVVPAL 11 Unmodified _QPVPVGVVPAL_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2619018554688 2 538.329142 1074.64373 -0.31872 -0.00017158 0.18869 0.00010158 -0.13004 -7.0002E-05 538.329277334711 78.492 0.27809 78.006 77.911 78.189 -0.48596 22 12 3 0 0 0 0.631 1 42983 42983 17.113 2.2746 1 933430 50547 4544 34168 34951 58818 58818 0.10939479408125408 QPVQEPKDQAF 11 Unmodified _QPVQEPKDQAF_ 0 0 0 ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA ENSG00000137996|ENST00000370128|RTCA ENSG00000137996|ENST00000370128|RTCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.3235473632812 2 643.822409 1285.63027 -0.81535 -0.00052494 -1.6244 -0.0010458 -2.4397 -0.0015708 644.3234045232948 30.111 0.22859 30.111 29.994 30.222 0 23 10 3 0 0 0 0.29175 1 15626 15626 27.223 11.074 1 3601700 50548 5000 34169 34952 58819 58819 -0.001124231617723126 QPVQPQQGY 9 Unmodified _QPVQPQQGY_ 0 0 0 ENST00000577324.1_1_17:30677304-30687987:+|nuORF;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207 ENST00000577324.1_1_17:30677304-30687987:+|nuORF ENST00000577324.1_1_17:30677304-30687987:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7583618164062 2 522.759081 1043.50361 NaN NaN NaN NaN NaN NaN NaN 25.392 1 25.392 24.892 25.892 0 0 0 0 0.6032 1 13016 13016 12.532 6.3258 1 50549 415 34170 34953 58820 58820 -0.01640304596230635 QPVQTKFPAY 10 Unmodified _QPVQTKFPAY_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8131713867188 2 589.813856 1177.61316 NaN NaN NaN NaN NaN NaN NaN 42.418 1 42.111 41.611 42.611 -0.30682 0 0 0 0.63617 1 22530 22530 29.082 13.833 1 50550 2175 34171 34954 58821 58821 0.031457010230724336 QPVQTKFPAY 10 Unmodified _QPVQTKFPAY_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;ENST00000462916.1_1_15:30024631-30025027:-|nuORF nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.813232421875 2 589.813856 1177.61316 0.90063 0.0005312 0.73967 0.00043627 1.6403 0.00096747 589.8142464772538 47.305 0.49964 42.224 41.933 42.432 -5.0805 56 34 2 0 0 0 0.069578 1 29238 29238 70.332 37.546 1 52942000 50551 2175 34171 34954 58822 58822 0.031457010230724336 QPVRSDPVSM 10 Oxidation (M) _QPVRSDPVSM(Oxidation (M))_ QPVRSDPVSM(1) QPVRSDPVSM(54) 0 0 1 ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3 ENSG00000141376|ENST00000407086|BCAS3 ENSG00000141376|ENST00000407086|BCAS3 MSMS AL20221201_MKP_PDAC_01 4 566.2763061523438 2 566.27678 1130.53901 NaN NaN NaN NaN NaN NaN NaN 21.22 1 18.527 18.027 19.027 -2.693 0 0 0 0.068442 1 11340 11340 53.833 15.859 1 50552 5319 34172 34955 58823 58823 974 -0.02104010130756251 QPVRVELEF 9 Unmodified _QPVRVELEF_ 0 0 0 REV__ENSG00000180900|ENST00000356994|SCRIB REV__ENSG00000180900|ENST00000356994|SCRIB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8076782226562 2 558.806031 1115.59751 NaN NaN NaN NaN NaN NaN NaN 68.273 1 68.273 67.773 68.773 0 0 0 0 0.84564 1 38061 38061 2.0598 0 1 + 50553 23172 34173 34956 58824 58824 0.04433414506047484 QPVSDAKVY 9 Unmodified _QPVSDAKVY_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7683410644531 2 503.763832 1005.51311 0.001783 8.9819E-07 3.0353 0.0015291 3.0371 0.00153 503.7655309140374 24.791 0.20683 24.791 24.678 24.885 0 16 9 2 0 0 0 0.36964 1 12672 12672 13.906 2.4113 1 1861400 50554 5744 34174 34957 58825 58825 0.010574636892783928 QPVSDAKVY 9 Unmodified _QPVSDAKVY_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 503.763832 1005.51311 0.64676 0.00032581 1.2876 0.00064867 1.9344 0.00097448 503.76479957692374 28.301 0.22568 25.153 25.097 25.323 -3.1482 0.18098 -0.00049122 NaN 13.906 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6026000 50555 5744 34174 34957 0.010574636892783928 QPVSQPLTY 9 Unmodified _QPVSQPLTY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7715454101562 2 516.771657 1031.52876 1.033 0.00053382 -0.84267 -0.00043547 0.19032 9.835E-05 516.7711243091688 42.765 0.42242 42.765 42.524 42.947 0 81 21 5 0 0 0 0.047196 2 23202 23095;23202 46.021 22.873 1 353210000 50556 8657 34175 34958 58826;58827 58827 0.014257502063401262 QPVSQPLTY 9 Unmodified _QPVSQPLTY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7706298828125 2 516.771657 1031.52876 0.093666 4.8404E-05 -0.21172 -0.00010941 -0.11806 -6.1008E-05 516.7717391709455 43.088 0.31983 42.778 42.61 42.93 -0.31039 33 14 3 0 0 0 0.03568 1 22898 22898 52.268 29.12 1 23567000 50557 8657 34175 34958 58828 58828 0.014257502063401262 QPVSQPLTY 9 Unmodified _QPVSQPLTY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7713623046875 2 516.771657 1031.52876 0.66848 0.00034545 0.30017 0.00015512 0.96866 0.00050057 516.7715771558878 42.755 0.27195 42.746 42.599 42.871 -0.0088196 24 12 3 0 0 0 0.0090948 1 22905 22905 85.272 49.145 1 6061100 50558 8657 34175 34958 58829 58829 0.014257502063401262 QPVSQPLTY 9 Unmodified _QPVSQPLTY_ 0 0 0 ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF;ENST00000534679.1_1_11:726170-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF ENST00000526909.5_1_11:710402-726978:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7722778320312 2 516.771657 1031.52876 0.98066 0.00050678 -0.30315 -0.00015666 0.67751 0.00035012 516.771467274624 49.735 0.56202 44.196 43.846 44.408 -5.5391 108 35 4 0 0 0 0.0090948 3 31129 30990;31129;31260 85.272 49.228 1 683090000 50559 8657 34175 34958 58830;58831;58832 58831 0.014257502063401262 QPVSSSYYYCC 11 Unmodified _QPVSSSYYYCC_ 0 0 0 ENST00000445193.7_2_3:58305088-58305178:+|nuORF ENST00000445193.7_2_3:58305088-58305178:+|nuORF ENST00000445193.7_2_3:58305088-58305178:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.251953125 2 650.254656 1298.49476 -0.52851 -0.00034367 -0.04468 -2.9053E-05 -0.57319 -0.00037272 650.2538023327302 40.903 0.16515 40.903 40.824 40.989 0 38 24 3 0 0 0 0.39949 2 21972 21972;22006 21.537 7.9936 1 16425000 50560 13452 34176 34959 58833;58834 58833 -0.1425478233920785 QPVTDPFAF 9 Unmodified _QPVTDPFAF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2540283203125 2 511.2531 1020.49165 0.29589 0.00015128 -0.99709 -0.00050977 -0.7012 -0.00035849 511.2533162943245 77.704 0.33096 77.704 77.547 77.878 0 32 17 3 0 0 0 0.2143 1 43255 43255 21.747 5.8995 1 2288300 50561 5929 34177 34960 58835 58835 -0.01777921339430577 QPVTDPFAF 9 Unmodified _QPVTDPFAF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2532653808594 2 511.2531 1020.49165 -0.7336 -0.00037506 -0.96685 -0.0004943 -1.7004 -0.00086936 511.252995504318 78.181 0.37405 77.698 77.517 77.891 -0.48296 47 18 5 0 0 0 0.011968 1 42795 42795 74.929 34.972 1 2831000 50562 5929 34177 34960 58836 58836 -0.01777921339430577 QPVTDPFAF 9 Unmodified _QPVTDPFAF_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2528991699219 2 511.2531 1020.49165 -0.078299 -4.0031E-05 0.54509 0.00027868 0.4668 0.00023865 511.2536772408643 84.992 0.33273 78.816 78.675 79.008 -6.1757 25 19 2 0 0 0 0.015445 1 55979 55979 68.081 19.735 1 14554000 50563 5929 34177 34960 58837 58837 -0.01777921339430577 QPVTLLDIY 9 Unmodified _QPVTLLDIY_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2987060546875 2 531.297507 1060.58046 0.4246 0.00022559 1.0564 0.00056129 1.481 0.00078687 531.298059544605 86.115 0.34674 85.612 85.444 85.791 -0.50318 31 13 3 0 0 0 0.23158 1 47099 47099 20.454 4.6064 1 1306000 50564 1041 34178 34961 58838 58838 0.05259493900257439 QPVTLLDIY 9 Unmodified _QPVTLLDIY_ 0 0 0 nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1;nc|ENSG00000070814|Q13428-5|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 nc|ENSG00000070814|Q13428-2|TCOF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.297507 1060.58046 0.34923 0.00018555 1.0025 0.0005326 1.3517 0.00071815 531.298165867703 85.663 0.25972 85.663 85.508 85.768 0 0.025304 -3.2844E-05 NaN 20.454 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 452010 50565 1041 34178 34961 0.05259493900257439 QPVTLPCTY 9 Carbamidomethyl (C) _QPVTLPC(Carbamidomethyl (C))TY_ QPVTLPC(1)TY QPVTLPC(79)TY 0 1 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7659912109375 2 539.765517 1077.51648 0.78941 0.0004261 -0.093238 -5.0327E-05 0.69618 0.00037577 539.7656313738102 59.839 0.68053 53.724 53.337 54.018 -6.1147 94 37 4 0 0 0 0.010611 3 38449 38316;38449;38596 78.728 42.601 1 262710000 50566 2355 34179 34962 58839;58840;58841 58840 232 -0.019176095283455652 QPVTTVPSM 9 Oxidation (M) _QPVTTVPSM(Oxidation (M))_ QPVTTVPSM(1) QPVTTVPSM(61) 0 0 1 ENST00000525183.1_1_11:75848287-75852454:+|nuORF;nc|ENSG00000198382|Q9P2Y5-2|UVRAG;ENSG00000198382|ENST00000356136|UVRAG ENST00000525183.1_1_11:75848287-75852454:+|nuORF ENST00000525183.1_1_11:75848287-75852454:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2453308105469 2 488.244418 974.474282 0.86559 0.00042262 1.0603 0.00051767 1.9258 0.00094028 488.2450080195645 32.562 0.41023 28.706 28.494 28.904 -3.8562 39 21 2 0 0 0 0.022193 2 18619 18495;18619 61.357 32.871 1 16337000 50567 10086 34180 34963 58842;58843 58843 1637 -0.013975849367284354 QPVVKLLG 8 Unmodified _QPVVKLLG_ 0 0 0 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 REV__nc|ENSG00000126107|Q5T447-2|HECTD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.5521240234375 1 853.550565 852.543289 1.4323 0.0012226 0.70077 0.00059814 2.1331 0.0018207 853.5509790223548 108.11 2.1454 101.94 100.83 102.97 -6.1757 571 382 2 0 0 0 0.81107 2 71646 71646;72598 0 0 1 5654400 + 50568 19540 34181 34964 58844;58845 58844 0.11111867145154974 QPVYNQPVY 9 Unmodified _QPVYNQPVY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2774047851562 2 554.277106 1106.53966 -0.021976 -1.2181E-05 0.41559 0.00023035 0.39362 0.00021817 554.2775646204542 40.903 0.32634 40.903 40.774 41.1 0 54 34 2 0 0 0 0.06187 1 22078 22078 42.095 16.695 1 26131000 50569 9647 34182 34965 58846 58846 -0.009348474193984657 QPVYNQPVY 9 Unmodified _QPVYNQPVY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2781982421875 2 554.277106 1106.53966 NaN NaN NaN NaN NaN NaN NaN 40.822 1 40.822 40.322 41.322 0 0 0 0 0.071041 1 21970 21970 50.855 29.108 1 50570 9647 34182 34965 58847 58847 -0.009348474193984657 QPWAQEAVCRY 11 Carbamidomethyl (C) _QPWAQEAVC(Carbamidomethyl (C))RY_ QPWAQEAVC(1)RY QPWAQEAVC(110)RY 0 1 0 nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1 nc|ENSG00000066117|Q96GM5-2|SMARCD1 nc|ENSG00000066117|Q96GM5-2|SMARCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 704.8276977539062 2 704.327336 1406.64012 0.57604 0.00040572 0.83525 0.00058829 1.4113 0.00099401 704.3280737070454 48.63 0.33249 43.234 43.039 43.371 -5.3961 42 19 3 0 0 0 4.7025E-09 2 30246 30246;30394 114.5 96.124 1 34700000 50571 928 34183 34966 58848;58849 58848 81 -0.046935584280390685 QPWHQYNAY 9 Unmodified _QPWHQYNAY_ 0 0 0 ENST00000538548.5_1_12:132198725-132271134:+|nuORF;ENSG00000061936|ENST00000261674|SFSWAP;nc|ENSG00000061936|Q12872-2|SFSWAP ENST00000538548.5_1_12:132198725-132271134:+|nuORF ENST00000538548.5_1_12:132198725-132271134:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.7695922851562 2 603.76998 1205.52541 -0.29226 -0.00017646 -0.065351 -3.9457E-05 -0.35761 -0.00021591 603.7698934235563 34.696 0.14748 34.505 34.417 34.564 -0.19131 16 6 3 0 0 0 0.47846 1 18148 18148 8.5933 0.98433 1 3474400 50572 843 34184 34967 58850 58850 -0.06913499847678395 QPWNGQYSL 9 Unmodified _QPWNGQYSL_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7601928710938 2 546.759081 1091.50361 -0.0061326 -3.3531E-06 0.28188 0.00015412 0.27574 0.00015077 546.7593036935928 56.984 0.34011 56.499 56.309 56.649 -0.48554 34 15 3 0 0 0 0.031062 1 30939 30939 54.774 12.679 1 8643900 50573 3488 34185 34968 58851 58851 -0.03848304596226626 QPWNGQYSL 9 Unmodified _QPWNGQYSL_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7603759765625 2 546.759081 1091.50361 1.1804 0.00064539 -0.56145 -0.00030698 0.61894 0.00033841 546.7590121008935 63.885 0.39349 57.71 57.487 57.88 -6.1757 52 21 3 0 0 0 0.30562 1 41273 41273 16.942 0.79319 1 33415000 50574 3488 34185 34968 58852 58852 -0.03848304596226626 QPWQEIHKL 9 Unmodified _QPWQEIHKL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5481567382812 3 393.548741 1177.62439 0.031229 1.229E-05 -0.11959 -4.7063E-05 -0.088357 -3.4773E-05 393.5487250431907 41.307 0.24873 41.004 40.863 41.112 -0.30304 30 11 3 0 0 0 0.10247 1 21868 21868 24.882 10.043 1 7688200 50575 9762 34186 34969 58853 58853 0.04268523117229961 QPWQEIHKL 9 Unmodified _QPWQEIHKL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20221201_MKP_PDAC_01 4 393.5482177734375 3 393.548741 1177.62439 NaN NaN NaN NaN NaN NaN NaN 45.184 1 40.332 39.832 40.832 -4.852 0 0 0 0.32177 1 27692 27692 17.443 12.146 1 50576 9762 34186 34969 58854 58854 0.04268523117229961 QPWRADVTY 9 Unmodified _QPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2799072265625 2 568.28018 1134.54581 1.5088 0.00085743 0.87056 0.00049472 2.3794 0.0013522 568.2802358266513 47.437 0.42593 42.203 42.025 42.451 -5.2339 43 24 3 0 0 0 0.010301 2 29375 29375;29497 79.596 31.848 1 28138000 50577 4005 34187 34970 58855;58856 58855 -0.0160832918786582 QPWRADVTY 9 Unmodified _QPWRADVTY_ 0 0 0 ENSG00000127415|ENST00000514224|IDUA;ENST00000514698.5_1_4:995622-996120:+|nuORF ENSG00000127415|ENST00000514224|IDUA ENSG00000127415|ENST00000514224|IDUA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.28018 1134.54581 -0.009836 -5.5896E-06 0.85716 0.00048711 0.84732 0.00048152 568.2802363237146 41.854 0.13005 41.854 41.751 41.881 0 -0.17477 -1.3477E-05 NaN 79.596 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1438700 50578 4005 34187 34970 -0.0160832918786582 QPWWTPKETGY 11 Unmodified _QPWWTPKETGY_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.8311767578125 2 696.832777 1391.651 0.91448 0.00063724 -0.30246 -0.00021077 0.61202 0.00042647 696.8324502927173 58.023 0.20057 57.957 57.852 58.053 -0.066036 17 9 2 0 0 0 0.20054 1 31588 31588 32.037 24.429 1 3383700 50579 10082 34188 34971 58857 58857 -0.02915832782105099 QPWWTPKETGY 11 Unmodified _QPWWTPKETGY_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 696.832777 1391.651 0.18071 0.00012593 -1.3543 -0.00094371 -1.1736 -0.00081778 696.8308918545426 58.392 0.20645 57.902 57.798 58.005 -0.49079 -0.027608 -0.0010746 NaN 32.037 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 860910 50580 10082 34188 34971 -0.02915832782105099 QPYDSRRVLY 10 Unmodified _QPYDSRRVLY_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.2294006347656 3 432.894688 1295.66223 0.15582 6.7453E-05 0.37405 0.00016192 0.52987 0.00022938 433.22891241600666 31.522 0.20111 31.522 31.418 31.619 0 19 9 3 0 0 0 0.64616 1 16420 16420 8.7518 4.6352 1 4285500 50581 5400 34189 34972 58858 58858 0.026229893120444103 QPYDSRRVLY 10 Unmodified _QPYDSRRVLY_ 0 0 0 nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B nc|ENSG00000142197|Q9Y3R5-2|DOP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8971252441406 3 432.894688 1295.66223 0.17242 7.4639E-05 2.4628 0.0010661 2.6352 0.0011408 432.89651384225283 31.475 0.1984 31.372 31.26 31.459 -0.10269 17 7 3 0 0 0 0.32533 1 16365 16365 25.997 15.682 1 16638000 50582 5400 34189 34972 58859 58859 0.026229893120444103 QPYFENGRVHY 11 Unmodified _QPYFENGRVHY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.5579833984375 3 470.558076 1408.6524 0.57409 0.00027014 -0.33325 -0.00015681 0.24085 0.00011333 470.5577468122415 36.987 0.30213 36.987 36.857 37.159 0 43 14 4 0 0 0 0.16388 1 19638 19638 35.08 24.764 1 12037000 50583 4653 34190 34973 58860 58860 -0.03558198693326631 QPYFENGRVHY 11 Unmodified _QPYFENGRVHY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.5588684082031 3 470.558076 1408.6524 -0.08823 -4.1517E-05 1.0074 0.00047404 0.91917 0.00043252 470.5585431959146 37.495 0.36022 37.224 37.015 37.375 -0.27133 52 14 5 0 0 0 0.018255 2 19665 19665;19770 59.013 51.067 1 22811000 50584 4653 34190 34973 58861;58862 58861 -0.03558198693326631 QPYFENGRVHY 11 Unmodified _QPYFENGRVHY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.5581665039062 3 470.558076 1408.6524 -0.30181 -0.00014202 1.1715 0.00055127 0.86971 0.00040925 470.55873611962437 37.142 0.21154 37.163 37.005 37.216 0.021545 13 9 2 0 0 0 0.67037 1 19710 19710 7.0371 5.7074 1 1895000 50585 4653 34190 34973 58863 58863 -0.03558198693326631 QPYFENGRVHY 11 Unmodified _QPYFENGRVHY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.5585021972656 3 470.558076 1408.6524 0.50861 0.00023933 0.31108 0.00014638 0.8197 0.00038571 470.55827743461845 41.215 0.4017 36.607 36.371 36.772 -4.6079 75 24 4 0 0 0 0.10976 2 24635 24635;24777 41.347 29.829 1 109890000 50586 4653 34190 34973 58864;58865 58864 -0.03558198693326631 QPYFENGRVHY 11 Unmodified _QPYFENGRVHY_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 705.3327026367188 2 705.333476 1408.6524 0.2386 0.00016829 0.92459 0.00065215 1.1632 0.00082044 705.3337897472755 41.222 0.25429 36.614 36.467 36.722 -4.6079 34 15 3 0 0 0 4.9583E-15 1 24731 24731 140.63 82.911 1 15486000 50587 4653 34190 34973 58866 58866 -0.03558198693326631 QPYFIYFPQI 10 Unmodified _QPYFIYFPQI_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.8411254882812 2 658.339707 1314.66486 -0.025994 -1.7113E-05 -0.59148 -0.00038939 -0.61747 -0.00040651 658.8407074077971 90.074 0.24971 90.074 89.93 90.18 0 29 19 2 0 0 0 0.71276 2 49788 49788;49811 1.4819 0.95714 1 443180 50588 9169 34191 34974 58867;58868 58867 0.02011444716981714 QPYGGTMSEF 10 Oxidation (M) _QPYGGTM(Oxidation (M))SEF_ QPYGGTM(1)SEF QPYGGTM(48)SEF 0 0 1 ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7337646484375 2 566.734414 1131.45428 0.2736 0.00015506 -0.58502 -0.00033155 -0.31141 -0.00017649 566.7341786679997 37.332 0.25741 37.332 37.201 37.458 0 28 13 3 0 0 0 0.095098 1 19838 19838 47.749 32.91 1 5688800 50589 254 34192 34975 58869 58869 20 -0.10619380667367295 QPYGTRNAVL 10 Unmodified _QPYGTRNAVL_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7999877929688 2 559.80128 1117.58801 1.4088 0.00078866 -1.426 -0.00079827 -0.017159 -9.6056E-06 559.8002298256501 37.532 0.25268 33.248 33.102 33.355 -4.2835 23 14 2 0 0 0 0.30444 1 22049 22049 27.223 9.0883 1 8669700 50590 3909 34193 34976 58870 58870 0.033916462205070275 QPYLYKISF 9 Unmodified _QPYLYKISF_ 0 0 0 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 ENSG00000123395|ENST00000336854|ATG101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8182373046875 2 579.813325 1157.6121 0.69406 0.00040243 1.3485 0.00078189 2.0426 0.0011843 579.8143477069709 67.755 0.24515 67.773 67.647 67.893 0.018036 22 11 2 0 0 0 0.331 1 37190 37190 21.537 0 1 9279000 50591 3706 34194 34977 58871 58871 0.039594866541847296 QPYNASHLY 9 Unmodified _QPYNASHLY_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7593383789062 2 546.759081 1091.50361 NaN NaN NaN NaN NaN NaN NaN 32.852 1 32.852 32.352 33.352 0 0 0 0 0.12337 1 17191 17191 39.957 24.11 1 50592 7794 34195 34978 58872 58872 -0.03848304596226626 QPYNASHLY 9 Unmodified _QPYNASHLY_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MSMS AL20221201_MKP_PDAC_01 4 546.7554321289062 2 546.759081 1091.50361 NaN NaN NaN NaN NaN NaN NaN 37.066 1 32.783 32.283 33.283 -4.2835 0 0 0 0.17247 1 21715 21715 34.102 15.956 1 50593 7794 34195 34978 58873 58873 -0.03848304596226626 QPYPGSSHTF 10 Unmodified _QPYPGSSHTF_ 0 0 0 ENST00000538517.6_1_19:14048664-14064120:-|nuORF ENST00000538517.6_1_19:14048664-14064120:-|nuORF ENST00000538517.6_1_19:14048664-14064120:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7539672851562 2 560.756538 1119.49852 -0.53001 -0.00029721 -0.66334 -0.00037197 -1.1933 -0.00066918 560.7557483894763 30.416 0.17914 30.416 30.324 30.503 0 13 8 2 0 0 0 0.24625 1 15806 15806 30.637 23.913 1 1460200 50594 15007 34196 34979 58874 58874 -0.05644608458851508 QPYSKDSPF 9 Unmodified _QPYSKDSPF_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7532348632812 2 534.753464 1067.49238 -0.2338 -0.00012502 0.055051 2.9439E-05 -0.17875 -9.5585E-05 534.7535445992955 33.43 0.28374 33.43 33.223 33.507 0 43 18 4 0 0 0 0.21643 1 17477 17477 21.537 3.3906 1 30720000 50595 1099 34197 34980 58875 58875 -0.03867126690374789 QPYSKDSPF 9 Unmodified _QPYSKDSPF_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1;ENST00000595789.5_1_19:44056953-44079610:-|nuORF ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.753464 1067.49238 -0.2338 -0.00012502 0.055051 2.9439E-05 -0.17875 -9.5585E-05 534.7535445992955 33.43 0.28374 33.43 33.223 33.507 0 0 0 NaN 21.537 43 18 4 NaN NaN NaN NaN 0 NaN NaN 0 30720000 50596 1099 34197 34980 -0.03867126690374789 QPYTDGVRM 9 Oxidation (M) _QPYTDGVRM(Oxidation (M))_ QPYTDGVRM(1) QPYTDGVRM(46) 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7494506835938 2 541.750398 1081.48624 -0.30034 -0.00016271 -0.96638 -0.00052353 -1.2667 -0.00068624 541.7499546732328 20.003 0.50866 20.003 19.801 20.31 0 210 48 6 0 0 0 0.047788 1 10025 10025 45.7 34.876 1 193140000 50597 8363 34198 34981 58876 58876 1415 -0.05123968193561268 QPYTDGVRM 9 Oxidation (M) _QPYTDGVRM(Oxidation (M))_ QPYTDGVRM(1) QPYTDGVRM(110) 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.75048828125 2 541.750398 1081.48624 1.0331 0.00055969 -0.2955 -0.00016009 0.73761 0.0003996 541.7504253415385 20.804 0.35183 18.111 17.95 18.302 -2.693 50 21 3 0 0 0 0.0074135 2 11151 11049;11151 110.67 74.548 1 6159700 50598 8363 34198 34981 58877;58878 58878 1415 -0.05123968193561268 QPYTDGVRM 9 Oxidation (M) _QPYTDGVRM(Oxidation (M))_ QPYTDGVRM(1) QPYTDGVRM(69) 0 0 1 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.750732421875 2 541.750398 1081.48624 0.28429 0.00015401 -0.62252 -0.00033725 -0.33823 -0.00018324 541.7502374051494 22.62 0.69529 19.842 19.574 20.269 -2.7784 151 45 5 0 0 0 0.014417 3 12060 12060;12162;12277 69.105 46.369 1 400360000 50599 8363 34198 34981 58879;58880;58881 58879 1415 -0.05123968193561268 QPYTDGVRM 9 Unmodified _QPYTDGVRM_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7520751953125 2 533.752941 1065.49133 -0.70214 -0.00037477 -0.4912 -0.00026218 -1.1933 -0.00063695 533.7527503567353 32.861 0.33099 32.861 32.677 33.008 0 43 16 3 0 0 0 0.033747 2 17143 17143;17252 57.722 41.875 1 51020000 50600 8363 34198 34982 58882;58883 58882 -0.038796643309296996 QPYTDGVRM 9 Unmodified _QPYTDGVRM_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7526245117188 2 533.752941 1065.49133 1.1739 0.00062655 -1.337 -0.00071362 -0.16311 -8.7062E-05 533.7523799364095 37.415 0.73009 33.131 32.857 33.587 -4.2835 181 43 6 0 0 0 0.033747 3 21984 21858;21984;22109 57.722 36.132 1 1047799999.9999999 50601 8363 34198 34982 58884;58885;58886 58885 -0.038796643309296996 QPYTDGVRM 9 Unmodified _QPYTDGVRM_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.2610473632812 2 533.752941 1065.49133 1.1487 0.00061315 0.68652 0.00036643 1.8353 0.00097958 533.7535552603271 35.803 0.29654 31.61 31.382 31.678 -4.1928 38 18 3 0 0 0 0.16524 1 20743 20743 20.415 3.3016 1 18328000 50602 8363 34198 34982 58887 58887 -0.038796643309296996 QPYTDGVRM 9 Unmodified _QPYTDGVRM_ 0 0 0 ENSG00000173801|ENST00000393931|JUP;ENST00000585793.1_1_17:39914605-39919321:-|nuORF ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.752941 1065.49133 -0.29756 -0.00015882 1.051 0.00056096 0.75341 0.00040213 533.7533309583463 32.914 0.14612 32.755 32.664 32.81 -0.15918 -0.16049 0.0019628 NaN 57.722 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 746930 50603 8363 34198 34982 -0.038796643309296996 QPYWFWFLYFS 11 Unmodified _QPYWFWFLYFS_ 0 0 0 ENST00000228506.7_1_12:121134380-121134431:+|nuORF ENST00000228506.7_1_12:121134380-121134431:+|nuORF ENST00000228506.7_1_12:121134380-121134431:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.77001953125 3 528.583451 1582.72852 -0.0095842 -5.0661E-06 1.0641 0.00056246 1.0545 0.00055739 528.584023207722 29.652 0.27229 29.682 29.567 29.84 0.030106 17 11 2 0 0 0 0.306 1 15561 15561 0.45452 0.046251 1 1871900 50604 11052 34199 34983 58888 58888 -0.03953194845917096 QPYYELQGSNY 11 Unmodified _QPYYELQGSNY_ 0 0 0 nc|ENSG00000116785|Q02985-2|CFHR3;ENSG00000116785|ENST00000367425|CFHR3 nc|ENSG00000116785|Q02985-2|CFHR3 nc|ENSG00000116785|Q02985-2|CFHR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 681.3043823242188 2 681.304049 1360.59355 0.12188 8.3037E-05 1.2831 0.00087418 1.405 0.00095722 681.3036829308807 50.621 0.14555 50.621 50.518 50.664 0 10 6 2 0 0 0 0.71618 1 27930 27930 2.7352 0.23671 1 1608400 50605 3255 34200 34984 58889 58889 -0.07232719778312457 QQALFDFL 8 Unmodified _QQALFDFL_ 0 0 0 CACNB2|p.K302Q|1|0.17|ENSG00000165995|chr10:18518928-18518928|A/C|missense_variant CACNB2|p.K302Q|1|0.17|ENSG00000165995|chr10:18518928-18518928|A/C|missense_variant CACNB2|p.K302Q|1|0.17|ENSG00000165995|chr10:18518928-18518928|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.5050048828125 1 981.504009 980.496732 0.22728 0.00022308 1.1843 0.0011624 1.4116 0.0013855 981.5048608746629 100.58 0.10338 100.45 100.39 100.49 -0.13293 5 3 2 0 0 0 0.50586 1 54906 54906 34.187 5.7005 1 1033400 50606 47 34201 34985 58890 58890 0.005703825231762494 QQALSDRP 8 Unmodified _QQALSDRP_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MSMS AL20221201_MKP_PDAC_01 4 457.9066467285156 2 457.738148 913.461744 NaN NaN NaN NaN NaN NaN NaN 14.699 1 12.196 11.696 12.696 -2.5029 0 0 0 0.96606 1 7484 7484 7.2892 0 1 50607 10061 34202 34986 58891 58891 0.0015513971522977954 QQALYLDL 8 Unmodified _QQALYLDL_ 0 0 0 REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF REV__ENST00000435576.2_1_1:48241052-48459876:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.5147705078125 1 963.514573 962.507297 0.14592 0.0001406 0.69576 0.00067038 0.84168 0.00081097 963.5156282198888 84.71 0.30168 84.71 84.567 84.868 0 25 14 2 0 0 0 0.74163 1 47028 47028 13.508 2.684 1 865490 + 50608 24622 34203 34987 58892 58892 0.02454365177618456 QQAQGPYIY 9 Unmodified _QQAQGPYIY_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.8009643554688 2 534.261456 1066.50836 0.22435 0.00011986 0.3505 0.00018726 0.57485 0.00030712 534.7630159961697 64.714 0.7423 64.714 64.427 65.169 0 66 35 3 0 0 0 0.19613 1 36344 36344 12.532 3.1841 1 1455000 + 50609 22602 34204 34988 58893 58893 -0.02223420453469771 QQATFATRSR 10 Unmodified _QQATFATRSR_ 0 0 0 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 REV__nc|ENSG00000197587|Q8NFW5|DMBX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.3049926757812 2 583.307261 1164.59997 -0.56012 -0.00032672 -4.2686 -0.0024899 -4.8287 -0.0028166 583.8054702731667 27.233 0.16637 27.233 27.174 27.341 0 12 7 2 0 0 0 0.44373 1 14035 14035 19.257 1.1106 1 1924200 + 50610 29891 34205 34989 58894 58894 0.024252629636976053 QQATPGPAY 9 Unmodified _QQATPGPAY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7270202636719 2 466.727249 931.439946 -0.19415 -9.0616E-05 -0.818 -0.00038178 -1.0122 -0.0004724 466.7268585529486 27.167 0.36871 27.167 26.972 27.341 0 53 17 4 0 0 0 0.0088975 2 13937 13937;14031 104.8 74.163 1 41234000 50611 2314;1437 34206 34990 58895;58896 58895 -0.02851665033347217 QQATPGPAY 9 Unmodified _QQATPGPAY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4471435546875 1 932.447222 931.439946 -0.28565 -0.00026635 -1.1433 -0.0010661 -1.429 -0.0013324 932.4456382612007 27.153 0.21921 27.153 27.033 27.253 0 19 10 2 0 0 0 0.038285 1 13961 13961 50.855 16.753 1 2406200 50612 2314;1437 34206 34990 58897 58897 -0.02851665033347217 QQATPGPAY 9 Unmodified _QQATPGPAY_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7279968261719 2 466.727249 931.439946 0.5668 0.00026454 0.07386 3.4473E-05 0.64066 0.00029901 466.7272014458851 31.508 0.28507 27.812 27.642 27.927 -3.6958 17 14 2 0 0 0 0.0067112 2 17779 17779;17913 112.59 68.186 1 53801000 50613 2314;1437 34206 34990 58898;58899 58898 -0.02851665033347217 QQATRCVQ 8 Unmodified _QQATRCVQ_ 0 0 0 REV__ENST00000233099.5_1_2:37291955-37292069:-|nuORF REV__ENST00000233099.5_1_2:37291955-37292069:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 467.2307434082031 2 467.232176 932.449799 NaN NaN NaN NaN NaN NaN NaN 31.386 1 27.69 27.19 28.19 -3.6958 0 0 0 0.77249 1 17769 17769 24.674 7.7316 1 + 50614 24818 34207 34991 58900 58900 -0.01912800299612627 QQATRKMAAM 10 Unmodified _QQATRKMAAM_ 0 0 0 REV__ENST00000532490.1_1_11:36103265-36250724:+|nuORF REV__ENST00000532490.1_1_11:36103265-36250724:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.1938781738281 3 379.195204 1134.56378 0.81033 0.00030727 -4.2345 -0.0016057 -3.4241 -0.0012984 379.1936146337372 26.347 0.084444 23.396 23.374 23.459 -2.9511 6 4 2 0 0 0 0.63399 1 14530 14530 5.4027 0.35519 1 17780000 + 50615 28465 34208 34992 58901 58901 0.001883464709862892 QQAVPVDLF 9 Unmodified _QQAVPVDLF_ 0 0 0 nc|ENSG00000188917|Q96GJ1-3|TRMT2B;ENSG00000188917|ENST00000372936|TRMT2B nc|ENSG00000188917|Q96GJ1-3|TRMT2B nc|ENSG00000188917|Q96GJ1-3|TRMT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2760314941406 2 508.7742 1015.53385 0.21003 0.00010686 0.34072 0.00017335 0.55074 0.0002802 508.7744379430468 86.269 0.43214 85.766 85.544 85.976 -0.50318 41 17 3 0 0 0 0.54444 1 47278 47278 4.756 0 1 1740700 50616 9709 34209 34993 58902 58902 0.026700540689603258 QQCGGCTLL 9 Unmodified _QQCGGCTLL_ 0 0 0 REV__nc|ENSG00000135363|P25791|LMO2 REV__nc|ENSG00000135363|P25791|LMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.4136352539062 1 922.412099 921.404823 1.0359 0.00095551 0.20461 0.00018874 1.2405 0.0011442 922.4122956136295 102.51 0.080017 96.338 96.306 96.386 -6.1757 11 8 2 0 0 0 0.5029 1 68796 68796 7.2892 0.56607 1 2159800 + 50617 20058 34210 34994 58903 58903 -0.05902367157148092 QQDFFTPNLF 10 Unmodified _QQDFFTPNLF_ 0 0 0 ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.800048828125 2 628.800946 1255.58734 1.4108 0.00088711 -0.9941 -0.00062509 0.4167 0.00026202 628.8005094609218 50.016 0.28107 49.967 49.846 50.127 -0.048828 21 13 2 0 0 0 0.63399 1 27036 27036 9.3831 3.1773 1 2212000 50618 3050 34211 34995 58904 58904 -0.03023193219200948 QQDFFTPNLF 10 Unmodified _QQDFFTPNLF_ 0 0 0 ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8008422851562 2 628.800946 1255.58734 0.96057 0.00060401 -0.61375 -0.00038593 0.34682 0.00021808 628.8002929368256 55.179 0.49446 49.258 49.078 49.573 -5.9211 53 30 2 0 0 0 0.44373 1 35226 35226 19.257 5.3509 1 18656000 50619 3050 34211 34995 58905 58905 -0.03023193219200948 QQDFFTPNLF 10 Unmodified _QQDFFTPNLF_ 0 0 0 ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B ENSG00000114638|ENST00000264234|UPK1B MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 628.800946 1255.58734 0.96057 0.00060401 -0.61375 -0.00038593 0.34682 0.00021808 628.8002929368256 55.179 0.49446 49.258 49.078 49.573 -5.9211 -0.14687 0.0003733 NaN 19.257 53 30 2 NaN NaN NaN NaN 0 NaN NaN 0 18656000 50620 3050 34211 34995 -0.03023193219200948 QQDFVFFASNC 11 Unmodified _QQDFVFFASNC_ 0 0 0 ENST00000547865.5_2_12:49854586-49856075:+|nuORF;ENST00000548777.5_2_12:49854586-49878444:+|nuORF ENST00000547865.5_2_12:49854586-49856075:+|nuORF ENST00000547865.5_2_12:49854586-49856075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.2813720703125 2 653.282063 1304.54957 0.68167 0.00044532 -2.2904 -0.0014963 -1.6087 -0.0010509 653.7819173369626 74.047 0.2817 73.571 73.487 73.768 -0.47588 23 11 3 0 0 0 0.67937 1 40529 40529 6.1918 3.1966 1 856740 50621 15132 34212 34996 58906 58906 -0.09052027476286639 QQDFVFFASNC 11 Unmodified _QQDFVFFASNC_ 0 0 0 ENST00000547865.5_2_12:49854586-49856075:+|nuORF;ENST00000548777.5_2_12:49854586-49878444:+|nuORF ENST00000547865.5_2_12:49854586-49856075:+|nuORF ENST00000547865.5_2_12:49854586-49856075:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 653.282063 1304.54957 0.58525 0.00038233 -2.4719 -0.0016148 -1.8866 -0.0012325 653.7820055997133 73.543 0.24442 73.587 73.428 73.672 0.043983 0.0082883 -0.00017156 NaN 6.1918 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1144500 50622 15132 34212 34996 -0.09052027476286639 QQDLNLDIEKI 11 Unmodified _QQDLNLDIEKI_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.8527221679688 2 664.856449 1327.69835 NaN NaN NaN NaN NaN NaN NaN 93.046 1 93.046 92.546 93.546 0 0 0 0 0.94201 1 51446 51446 1.0715 0.67075 1 50623 3335 34213 34997 58907 58907 0.04760401698240457 QQDVQDLY 8 Unmodified _QQDVQDLY_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7391967773438 2 504.735271 1007.45599 1.0844 0.00054733 3.8706 0.0019536 4.955 0.0025009 504.73727848087816 19.749 0.25059 17.093 16.955 17.205 -2.6564 27 16 2 0 0 0 0.42423 1 10443 10443 42.095 0 1 4661900 50624 9900 34214 34998 58908 58908 -0.04744003587086354 QQDWLYEP 8 Unmodified _QQDWLYEP_ 0 0 0 REV__nc|ENSG00000175164|P16442|ABO REV__nc|ENSG00000175164|P16442|ABO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.748291015625 2 539.745639 1077.47673 -0.19034 -0.00010274 1.9604 0.0010581 1.77 0.00095536 539.746467275973 29.448 0.24684 29.448 29.262 29.508 0 18 11 2 0 0 0 0.75262 1 15247 15247 12.532 0 1 1982900 + 50625 22844 34215 34999 58909 58909 -0.05891413207450569 QQEITSTIN 9 Unmodified _QQEITSTIN_ 0 0 0 REV__ENSG00000181817|ENST00000315732|LSM10 REV__ENSG00000181817|ENST00000315732|LSM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2633056640625 2 517.261653 1032.50875 1.3878 0.00071786 -1.0688 -0.00055282 0.31906 0.00016504 517.2609656875076 102.87 0.082573 96.691 96.639 96.722 -6.1757 43 23 2 0 0 0 0.55144 1 69000 69000 4.3292 0 1 7099900 + 50626 23225 34216 35000 58910 58910 -0.00620045524260604 QQETLIEF 8 Unmodified _QQETLIEF_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.257080078125 2 504.25584 1006.49713 0.72782 0.00036701 0.12943 6.5268E-05 0.85725 0.00043227 504.2561322449626 60.925 0.47934 60.925 60.67 61.149 0 44 19 3 0 0 0 0.40035 2 33941 33941;34039 44.407 3.3156 1 3510500 + 50627 19148 34217 35001 58911;58912 58911 -0.005862425476038879 QQETLIEF 8 Unmodified _QQETLIEF_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2564086914062 2 504.25584 1006.49713 -0.54444 -0.00027454 1.5531 0.00078314 1.0086 0.0005086 504.2567965774533 61.443 0.32062 60.954 60.838 61.158 -0.48932 23 14 2 0 0 0 0.71527 1 33441 33441 15.847 0 1 2232300 + 50628 19148 34217 35001 58913 58913 -0.005862425476038879 QQETLIEF 8 Unmodified _QQETLIEF_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.25584 1006.49713 0.72782 0.00036701 0.12943 6.5268E-05 0.85725 0.00043227 504.2561322449626 60.925 0.47934 60.925 60.67 61.149 0 -0.014157 -0.00054266 NaN 44.407 44 19 3 NaN NaN NaN NaN 0 NaN NaN 0 3510500 + 50629 19148 34217 35001 -0.005862425476038879 QQETLIEF 8 Unmodified _QQETLIEF_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 504.25584 1006.49713 -0.54444 -0.00027454 1.5531 0.00078314 1.0086 0.0005086 504.2567965774533 61.443 0.32062 60.954 60.838 61.158 -0.48932 0.014157 0.00089307 NaN 44.407 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2232300 + 50630 19148 34217 35001 -0.005862425476038879 QQFAAEYT 8 Unmodified _QQFAAEYT_ 0 0 0 nc|ENSG00000196233|Q96JN0-2|LCOR;nc|ENSG00000196233|Q96JN0|LCOR;ENSG00000196233|ENST00000421806|LCOR nc|ENSG00000196233|Q96JN0-2|LCOR;ENSG00000196233|ENST00000421806|LCOR ENSG00000196233|ENST00000421806|LCOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2201538085938 2 479.219257 956.423961 0.91299 0.00043752 -0.61207 -0.00029331 0.30092 0.00014421 479.2189024028711 49.917 0.38043 44.378 44.201 44.581 -5.5391 43 23 2 0 0 0 0.6895 1 31195 31195 18.135 18.135 1 26047000 50631 9784;16476 34218 35002 58914 58914 -0.05599371270250231 QQFCWHVKLQF 11 Unmodified _QQFCWHVKLQF_ 0 0 0 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 nc|ENSG00000117174|Q9NWK9-2|ZNHIT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 732.3675537109375 2 732.366264 1462.71798 0.45904 0.00033619 1.5889 0.0011637 2.0479 0.0014998 732.367467186395 60.862 0.27923 60.818 60.708 60.987 -0.04351 30 13 3 0 0 0 0.18636 1 33197 33197 32.786 3.3485 1 8783400 50632 3287 34219 35003 58915 58915 0.005124992279888829 QQFLYMGF 8 Unmodified _QQFLYMGF_ 0 0 0 ENSG00000119147|ENST00000238044|ECRG4 ENSG00000119147|ENST00000238044|ECRG4 ENSG00000119147|ENST00000238044|ECRG4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7721557617188 2 517.244221 1032.47389 0.2697 0.0001395 1.7626 0.0009117 2.0323 0.0010512 517.2447600604341 65.693 0.20378 65.693 65.572 65.776 0 13 8 2 0 0 0 8.7369 1 36584 36584 6.3541 0 1 1137500 50633 3415 34220 35004 58916 58916 -0.041049598659128606 QQGCSSSE 8 Unmodified _QQGCSSSE_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1546630859375 2 413.1558 824.297046 NaN NaN NaN NaN NaN NaN NaN 59.098 1 59.098 58.598 59.598 0 0 0 0 0.97444 1 32920 32920 2.3027 1.5091 1 50634 10523 34221 35005 58917 58917 -0.12213040486869886 QQGGQEGDSI 10 Unmodified _QQGGQEGDSI_ 0 0 0 REV__ENSG00000157637|ENST00000374759|SLC38A10 REV__ENSG00000157637|ENST00000374759|SLC38A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.724853515625 2 509.725435 1017.43632 0.076045 3.8762E-05 -0.29155 -0.00014861 -0.21551 -0.00010985 509.72506805012387 52.231 0.38445 52.231 52.039 52.423 0 61 16 5 0 0 0 0.62068 1 28849 28849 10.074 0.72649 1 24648000 + 50635 21395 34222 35006 58918 58918 -0.07170379597835108 QQHTQVLFI 9 Unmodified _QQHTQVLFI_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3067626953125 2 557.306198 1112.59784 0.10777 6.0059E-05 3.2078 0.0017877 3.3155 0.0018478 557.3060312762008 60.58 0.15866 60.091 60.03 60.189 -0.48932 17 7 3 0 0 0 0.042911 1 33000 33000 48.346 0 1 2718600 50636 2314 34223 35007 58919 58919 0.04604834225892773 QQIDRVVEV 9 Unmodified _QQIDRVVEV_ 0 0 0 nc|ENSG00000145996|Q5VV42-2|CDKAL1;ENSG00000145996|ENST00000274695|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 nc|ENSG00000145996|Q5VV42-2|CDKAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3026733398438 2 543.301113 1084.58767 0.32067 0.00017422 2.7428 0.0014902 3.0635 0.0016644 543.3014040381588 39.349 0.39231 39.349 39.077 39.469 0 44 18 3 0 0 0 0.0087923 1 21075 21075 103.42 35.339 1 5240700 50637 5744 34224 35008 58920 58920 0.048762265006644157 QQKAALQEL 9 Unmodified _QQKAALQEL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.3117065429688 2 514.790381 1027.56621 2.1636 0.0011138 -1.0843 -0.00055819 1.0793 0.0005556 514.7902735765014 62.686 0.45615 56.511 56.302 56.759 -6.1757 33 22 3 0 0 0 0.20554 1 40483 40483 9.3831 1.473 1 47530000 50638 3863 34225 35009 58921 58921 0.05352841471949432 QQKLSGWG 8 Unmodified _QQKLSGWG_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2390747070312 2 452.237784 902.461016 0.95403 0.00043145 1.2362 0.00055906 2.1902 0.0009905 452.23839254277965 52.328 1.0573 52.269 51.611 52.669 -0.058918 82 51 2 0 0 0 0.80676 1 28416 28416 2.5775 0 1 2291400 50639 10242 34226 35010 58922 58922 0.0058834506620542015 QQKWKDFEL 9 Unmodified _QQKWKDFEL_ 0 0 0 ENSG00000074755|ENST00000381638|ZZEF1;ENST00000573536.1_1_17:3912804-3919778:-|nuORF ENSG00000074755|ENST00000381638|ZZEF1 ENSG00000074755|ENST00000381638|ZZEF1 MSMS AL20221201_MKP_PDAC_01 4 407.8824462890625 3 407.880267 1220.61897 NaN NaN NaN NaN NaN NaN NaN 22.049 1 19.315 18.815 19.815 -2.7348 0 0 0 0.82283 1 11844 11844 4.897 3.5674 1 50640 1133 34227 35011 58923 58923 0.017487995347664764 QQLCVEWAF 9 Unmodified _QQLCVEWAF_ 0 0 0 ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-6|ADAMTSL1 ENST00000380559.7_1_9:18706652-18908543:+|nuORF ENST00000380559.7_1_9:18706652-18908543:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2395629882812 2 562.265684 1122.51682 NaN NaN NaN NaN NaN NaN NaN 30.553 1 30.553 30.053 31.053 0 0 0 0 0.82396 1 15879 15879 4.756 0.42677 1 50641 8723 34228 35012 58924 58924 -0.03954189808519004 QQLDSKFLEQV 11 Unmodified _QQLDSKFLEQV_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.8507690429688 2 667.851167 1333.68778 -0.29105 -0.00019438 0.058946 3.9367E-05 -0.2321 -0.00015501 667.851582271995 56.404 0.19339 56.404 56.301 56.495 0 15 8 2 0 0 0 0.65846 1 31361 31361 8.1555 2.4237 1 2681900 50642 3121 34229 35013 58925 58925 0.034284190437801954 QQLDSKFLEQV 11 Unmodified _QQLDSKFLEQV_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MSMS AL20221201_MKP_PDAC_01 4 667.8516235351562 2 667.851167 1333.68778 NaN NaN NaN NaN NaN NaN NaN 62.941 1 56.765 56.265 57.265 -6.1757 0 0 0 0.39541 1 40643 40643 28.495 10.121 1 50643 3121 34229 35013 58926 58926 0.034284190437801954 QQLEELCIACE 11 Unmodified _QQLEELCIACE_ 0 0 0 REV__ENSG00000180233|ENST00000323037|ZNRF2 REV__ENSG00000180233|ENST00000323037|ZNRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.7886352539062 2 639.788863 1277.56317 0.97097 0.00062122 0.46401 0.00029687 1.435 0.00091809 639.7893049419474 87.718 0.45054 81.542 81.296 81.747 -6.1757 31 24 2 0 0 0 0.59689 1 57860 57860 11.495 0.67078 1 11866000 + 50644 23144 34230 35014 58927 58927 -0.06450537759360486 QQLEELCIACE 11 Unmodified _QQLEELCIACE_ 0 0 0 REV__ENSG00000180233|ENST00000323037|ZNRF2 REV__ENSG00000180233|ENST00000323037|ZNRF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 640.3237915039062 2 639.788863 1277.56317 0.97097 0.00062122 0.46401 0.00029687 1.435 0.00091809 639.7893049419474 87.718 0.45054 81.542 81.296 81.747 -6.1757 31 24 2 0 0 0 0.29445 1 57772 57772 10.8 2.644 1 11866000 + 50645 23144 34230 35014 58928 58928 -0.06450537759360486 QQLGKVVQV 9 Unmodified _QQLGKVVQV_ 0 0 0 ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF ENST00000495104.1_1_4:165841962-165842070:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.8035583496094 2 499.803291 997.59203 NaN NaN NaN NaN NaN NaN NaN 40.504 1 35.975 35.475 36.475 -4.5294 0 0 0 0.035065 1 24195 24195 64.236 0 1 50646 14348 34231 35015 58929 58929 0.09313735714238192 QQLHNWYKI 9 Unmodified _QQLHNWYKI_ 0 0 0 REV__ENSG00000162630|ENST00000367434|B3GALT2 REV__ENSG00000162630|ENST00000367434|B3GALT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.888671875 3 410.552374 1228.63529 1.1951 0.00049063 2.4276 0.00099664 3.6226 0.0014873 410.55350033796816 38.026 0.24838 33.657 33.501 33.75 -4.3689 23 14 2 0 0 0 0.2001 1 22369 22369 21.537 5.2624 1 10264000 + 50647 21670 34232 35016 58930 58930 0.030119254915007332 QQLLLQQQL 9 Unmodified _QQLLLQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3277587890625 2 556.327131 1110.63971 0.14114 7.8518E-05 0.22646 0.00012598 0.36759 0.0002045 556.3268872881712 51.336 0.21085 50.923 50.738 50.949 -0.41351 18 10 2 0 0 0 0.070838 1 27634 27634 39.957 3.9131 1 2228000 + 50648 24425 34233 35017 58931 58931 0.08881389914427018 QQLLLQQQL 9 Unmodified _QQLLLQQQL_ 0 0 0 REV__ENSG00000236609|ENST00000457543|ZNF853 REV__ENSG00000236609|ENST00000457543|ZNF853 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 556.327131 1110.63971 0.14114 7.8518E-05 0.22646 0.00012598 0.36759 0.0002045 556.3268872881712 51.336 0.21085 50.923 50.738 50.949 -0.41351 0 0 NaN 39.957 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2228000 + 50649 24425 34233 35017 0.08881389914427018 QQLPLELF 8 Unmodified _QQLPLELF_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|229|1|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|229|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2796020507812 2 494.279118 986.543683 0.15641 7.731E-05 0.45746 0.00022611 0.61387 0.00030342 494.2793072896673 81.617 0.29399 81.617 81.465 81.759 0 40 15 3 0 0 0 0.67481 2 45250 45250;45346 19.439 2.4967 1 1094900 + 50650 29373 34234 35018 58932;58933 58932 0.0498724207432133 QQLSGLSPSSP 11 Unmodified _QQLSGLSPSSP_ 0 0 0 REV__ENSG00000105270|ENST00000360535|CLIP3 REV__ENSG00000105270|ENST00000360535|CLIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.28515625 2 550.782753 1099.55095 -0.49266 -0.00027135 2.1731 0.0011969 1.6804 0.00092554 550.7839752233522 56.576 0.26794 56.09 56.018 56.286 -0.48554 24 16 2 0 0 0 0.39949 1 30731 30731 21.537 2.28 1 10332000 + 50651 18413 34235 35019 58934 58934 0.005159298840908377 QQLWLLTPKP 10 Unmodified _QQLWLLTPKP_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.9113464355469 3 408.576408 1222.70739 0.15498 6.3323E-05 1.4422 0.00058924 1.5972 0.00065256 408.5768206216769 40.255 0.48803 40.26 39.936 40.424 0.0050545 48 22 3 0 0 0 0.7191 1 21454 21454 0.77653 0.14971 1 4493600 + 50652 22751 34236 35020 58935 58935 0.10494839845205206 QQMCTWPLTY 10 Unmodified _QQMCTWPLTY_ 0 0 0 REV__ENSG00000115556|ENST00000450993|PLCD4 REV__ENSG00000115556|ENST00000450993|PLCD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1914367675781 3 424.191348 1269.55222 0.4147 0.00017591 -0.13651 -5.7907E-05 0.27818 0.000118 424.1913149582233 48.377 0.17796 48.005 47.945 48.123 -0.37172 14 8 2 0 0 0 0.71123 1 25985 25985 0.69767 0 1 2257700 + 50653 18992 34237 35021 58936 58936 -0.0717789534298845 QQMLGVNEY 9 Unmodified _QQMLGVNEY_ 0 0 0 REV__nc|ENSG00000179295|Q06124-1|PTPN11 REV__nc|ENSG00000179295|Q06124-1|PTPN11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2489013671875 2 541.252774 1080.491 -0.31194 -0.00016884 -2.3938 -0.0012957 -2.7058 -0.0014645 541.753733636152 19.666 0.18726 19.666 19.566 19.754 0 63 32 3 0 0 0 0.55775 1 9818 9818 3.9444 1.3669 1 1599400 + 50654 23090 34238 35022 58937 58937 -0.046030840507683024 QQMMQQQQQQG 11 Unmodified _QQMMQQQQQQG_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.867919921875 3 454.867816 1361.58162 NaN NaN NaN NaN NaN NaN NaN 92.41 1 91.929 91.429 92.429 -0.48092 0 0 0 0.94307 1 50508 50508 0.08335 0 1 50655 1813 34239 35023 58938 58938 -0.08470983064808024 QQMRDYCKYQ 10 Unmodified _QQMRDYCKYQ_ 0 0 0 REV__nc|ENSG00000004948|P30988-4|CALCR REV__nc|ENSG00000004948|P30988-4|CALCR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8681640625 3 454.869157 1361.58564 NaN NaN NaN NaN NaN NaN NaN 92.804 1 92.804 92.304 93.304 0 0 0 0 1.0048 1 51314 51314 0.13989 0.056541 1 + 50656 29480 34240 35024 58939 58939 -0.08068893571089575 QQNPRLVYVC 10 Unmodified _QQNPRLVYVC_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.2135925292969 3 407.213252 1218.61793 NaN NaN NaN NaN NaN NaN NaN 10.581 1 10.581 10.081 11.081 0 0 0 0 1.0024 1 5021 5021 0.13989 0 1 50657 6701 34241 35025 58940 58940 0.017362618941888286 QQPAKSWEVF 10 Unmodified _QQPAKSWEVF_ 0 0 0 REV__ENSG00000268182|ENST00000598409|SMIM17 REV__ENSG00000268182|ENST00000598409|SMIM17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8763122558594 3 407.208384 1218.60332 -0.0038155 -1.5537E-06 -0.21083 -8.5853E-05 -0.21465 -8.7407E-05 407.20821763745846 39.17 0.19852 38.883 38.763 38.961 -0.28687 15 8 2 0 0 0 0.6966 1 20587 20587 3.3196 2.1263 1 3686600 + 50658 24618 34242 35026 58941 58941 0.0027651301768401026 QQPAKSWEVF 10 Unmodified _QQPAKSWEVF_ 0 0 0 REV__ENSG00000268182|ENST00000598409|SMIM17 REV__ENSG00000268182|ENST00000598409|SMIM17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.208384 1218.60332 0.36615 0.0001491 -0.50836 -0.00020701 -0.14221 -5.7911E-05 407.208160184973 38.859 0.15887 38.859 38.77 38.929 0 -0.012337 -0.00023899 NaN 3.3196 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 598290 + 50659 24618 34242 35026 0.0027651301768401026 QQPAKSWEVF 10 Unmodified _QQPAKSWEVF_ 0 0 0 REV__ENSG00000268182|ENST00000598409|SMIM17 REV__ENSG00000268182|ENST00000598409|SMIM17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 407.208384 1218.60332 -0.0038155 -1.5537E-06 -0.21083 -8.5853E-05 -0.21465 -8.7407E-05 407.20821763745846 39.17 0.19852 38.883 38.763 38.961 -0.28687 0.012337 0.00012448 NaN 3.3196 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3686600 + 50660 24618 34242 35026 0.0027651301768401026 QQPVIVQASR 10 Unmodified _QQPVIVQASR_ 0 0 0 REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF REV__ENST00000358933.9_1_16:67906988-67910776:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.2909545898438 2 563.32238 1124.63021 0.96314 0.00054256 -0.59568 -0.00033556 0.36746 0.000207 563.3223857490091 65.142 0.40535 58.967 58.666 59.072 -6.1757 29 22 2 0 0 0 0.23162 1 42312 42312 12.241 2.8575 1 7349100 + 50661 25881 34243 35027 58942 58942 0.07287621628893248 QQQEGQQMVHR 11 Unmodified _QQQEGQQMVHR_ 0 0 0 REV__ENSG00000171495|ENST00000399564|MROH2B REV__ENSG00000171495|ENST00000399564|MROH2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 684.8247680664062 2 684.825492 1367.63643 0.39856 0.00027294 -1.1172 -0.00076508 -0.71863 -0.00049214 684.8248144424192 63.038 0.24969 62.552 62.44 62.689 -0.48617 18 11 2 0 0 0 0.70069 1 34380 34380 4.1895 1.1943 1 3316500 + 50662 22567 34244 35028 58943 58943 -0.032682282018868136 QQQFLSAPY 9 Unmodified _QQQFLSAPY_ 0 0 0 REV__nc|ENSG00000134644|Q14671-4|PUM1 REV__nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2723388671875 2 541.269281 1080.52401 0.35984 0.00019477 0.10672 5.7764E-05 0.46656 0.00025253 541.2693199250077 32.961 0.6296 29.105 28.652 29.281 -3.8562 87 36 3 0 0 0 0.1773 1 18614 18614 25.399 25.399 1 118510000 + 50663 29642 34245 35029 58944 58944 -0.01303133936426093 QQQLKAEYF 9 Unmodified _QQQLKAEYF_ 0 0 0 REV__nc|ENSG00000078674|Q15154-4|PCM1 REV__nc|ENSG00000078674|Q15154-4|PCM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5336608886719 3 385.532868 1153.57677 NaN NaN NaN NaN NaN NaN NaN 45.921 1 45.893 45.393 46.393 -0.028011 0 0 0 0.84564 1 24691 24691 1.0715 0.10919 1 + 50664 17632 34246 35030 58945 58945 0.0061282412636956 QQQRYTEITH 10 Unmodified _QQQRYTEITH_ 0 0 0 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2189025878906 3 435.217831 1302.63166 -0.38784 -0.00016879 2.358 0.0010262 1.9702 0.00085745 435.2192579352524 35.274 0.46105 35.051 34.784 35.245 -0.2224 53 20 4 0 0 0 0.63399 1 18413 18413 5.4027 1.8157 1 4527000 + 50665 17534 34247 35031 58946 58946 -0.007547890730165818 QQQRYTEITH 10 Unmodified _QQQRYTEITH_ 0 0 0 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 REV__nc|ENSG00000073282|Q9H3D4-10|TP63 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5532836914062 3 435.217831 1302.63166 0.38458 0.00016738 2.3545 0.0010247 2.7391 0.0011921 435.55305174898757 40.071 0.31061 35.542 35.341 35.652 -4.5294 38 28 2 0 0 0 0.48505 2 23919 23781;23919 10.899 6.183 1 28452000 + 50666 17534 34247 35031 58947;58948 58948 -0.007547890730165818 QQQYQALQQR 10 Unmodified _QQQYQALQQR_ 0 0 0 REV__ENSG00000146457|ENST00000621533|WTAP REV__ENSG00000146457|ENST00000621533|WTAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883361816406 3 430.889825 1289.64765 NaN NaN NaN NaN NaN NaN NaN 96.054 1 96.054 95.554 96.554 0 0 0 0 1.0004 1 53084 53084 0.62683 0.48693 1 + 50667 20836 34248 35032 58949 58949 0.014409171638817497 QQRIADIFV 9 Unmodified _QQRIADIFV_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8737487792969 3 363.873224 1088.59784 -0.58571 -0.00021313 1.4143 0.00051462 0.82857 0.0003015 363.8737518158007 34.658 0.33128 34.658 34.442 34.773 0 41 16 3 0 0 0 0.34999 1 18239 18239 10.151 0 1 6958000 50668 8890 34249 35033 58950 58950 0.057088342259021374 QQRLNRRPR 9 Unmodified _QQRLNRRPR_ 0 0 0 REV__nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5 REV__nc|ENSG00000290571|Q9HBQ8-2|GOLGA2P5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5770874023438 3 408.577916 1222.71192 -0.38298 -0.00015648 -1.2527 -0.00051183 -1.6357 -0.00066831 408.577253444177 37.261 0.38363 37.283 37.153 37.537 0.021545 53 17 4 0 0 0 0.58499 1 19759 19759 2.2828 0 1 7897800 + 50669 30028 34250 35034 58951 58951 0.10947161831336416 QQRRPYRRRRF 11 Unmodified _QQRRPYRRRRF_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS AL20221201_MKP_PDAC_01 4 809.9700317382812 2 809.966723 1617.91889 NaN NaN NaN NaN NaN NaN NaN 98.407 1 92.231 91.731 92.731 -6.1757 0 0 0 0.94301 1 65269 65269 0.35063 0.043601 1 50670 921 34251 35035 58952 58952 0.13464949379522295 QQRVMARHL 9 Unmodified _QQRVMARHL_ 0 0 0 ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38051140-38051556:-|nuORF ENSG00000187091|ENST00000334661|PLCD1 ENSG00000187091|ENST00000334661|PLCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2138977050781 3 380.213586 1137.61893 0.70445 0.00026784 0.19795 7.5265E-05 0.90241 0.00034311 380.21356797043694 41.462 0.37473 36.854 36.655 37.03 -4.6079 43 24 2 0 0 0 0.54444 1 25003 25003 2.7352 0 1 33568000 50671 9535 34252 35036 58953 58953 0.055625210537755265 QQRWRRQQWQD 11 Unmodified _QQRWRRQQWQD_ 0 0 0 REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.9379272460938 3 538.938061 1613.79235 NaN NaN NaN NaN NaN NaN NaN 15.754 1 15.76 15.26 16.26 0.0057774 0 0 0 0.9435 1 7867 7867 0 0 1 + 50672 26772 34253 35037 58954 58954 0.010009783637542569 QQSCGRRWL 9 Unmodified _QQSCGRRWL_ 0 0 0 REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF REV__ENST00000512375.1_1_4:84377137-84378237:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5259094238281 3 378.525942 1132.556 NaN NaN NaN NaN NaN NaN NaN 19.392 1 19.415 18.915 19.915 0.023106 0 0 0 0.85359 1 9774 9774 1.0715 0.61312 1 + 50673 21746 34254 35038 58955 58955 -0.0049804473428594065 QQSLGPFK 8 Unmodified _QQSLGPFK_ 0 0 0 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7481689453125 2 452.747985 903.481417 -0.16744 -7.5807E-05 0.95047 0.00043032 0.78303 0.00035452 452.7483959887662 32.236 0.25905 32.107 31.94 32.199 -0.12915 23 9 3 0 0 0 0.57045 1 16749 16749 28.487 0 1 3067900 + 50674 29832 34255 35039 58956 58956 0.02581515726001271 QQSQGPFY 8 Unmodified _QQSQGPFY_ 0 0 0 ENST00000376701.4_1_X:48549553-48549787:+|nuORF ENST00000376701.4_1_X:48549553-48549787:+|nuORF ENST00000376701.4_1_X:48549553-48549787:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.71728515625 2 477.719424 953.424296 NaN NaN NaN NaN NaN NaN NaN 27.191 1 27.191 26.691 27.691 0 0 0 0 0.47897 1 14002 14002 42.095 4.1206 1 50675 12505 34256 35040 58957 58957 -0.05427951550370835 QQSSWSVLS 9 Unmodified _QQSSWSVLS_ 0 0 0 ENST00000317089.9_1_16:46990844-46990895:-|nuORF ENST00000317089.9_1_16:46990844-46990895:-|nuORF ENST00000317089.9_1_16:46990844-46990895:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.7881774902344 2 511.251089 1020.48762 0.85933 0.00043933 0.29074 0.00014864 1.1501 0.00058797 511.75147424366503 91.61 0.088158 85.435 85.401 85.49 -6.1757 6 4 2 0 0 0 0.19891 1 60547 60547 11.64 1.4569 1 2622700 50676 11744 34257 35041 58958 58958 -0.02180010833126289 QQTFAAEY 8 Unmodified _QQTFAAEY_ 0 0 0 nc|ENSG00000173275|Q6P9G9-3|ZNF449 nc|ENSG00000173275|Q6P9G9-3|ZNF449 nc|ENSG00000173275|Q6P9G9-3|ZNF449 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 957.43017578125 1 957.431238 956.423961 0.050205 4.8068E-05 -0.039389 -3.7712E-05 0.010816 1.0356E-05 957.4317054125188 43.586 0.19392 43.276 43.144 43.338 -0.31039 15 8 2 0 0 0 0.50673 1 23152 23152 34.102 1.797 1 18583000 50677 16390 34258 35042 58959 58959 -0.05599371270250231 QQTKQQRENI 10 Unmodified _QQTKQQRENI_ 0 0 0 nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-3|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1 nc|ENSG00000164830|Q8N573-6|OXR1 nc|ENSG00000164830|Q8N573-6|OXR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.8939208984375 3 424.893347 1271.65821 0.079734 3.3878E-05 0.43906 0.00018655 0.51879 0.00022043 424.8935156501567 17.347 0.13314 17.352 17.269 17.402 0.0050564 15 9 3 0 0 0 0.6785 1 8752 8752 2.8433 0 1 1247200 50678 7250 34259 35043 58960 58960 0.03324899818335325 QQVKSYFYR 9 Unmodified _QQVKSYFYR_ 0 0 0 REV__nc|ENSG00000066117|Q96GM5-2|SMARCD1 REV__nc|ENSG00000066117|Q96GM5-2|SMARCD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2196655273438 3 406.880379 1217.61931 -0.44049 -0.00017923 1.0112 0.00041144 0.57071 0.00023221 406.88047242047475 36.421 0.22695 36.443 36.247 36.474 0.021545 15 9 2 0 0 0 0.21856 1 19191 19191 1.9064 0.71303 1 632190 + 50679 17396 34260 35044 58961 58961 0.019202192546117658 QQVNVYGVCV 10 Unmodified _QQVNVYGVCV_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2826538085938 2 554.776416 1107.53828 0.27749 0.00015395 -0.0031777 -1.7629E-06 0.27431 0.00015218 554.7762504222896 76.445 0.53172 75.966 75.617 76.149 -0.47945 73 29 3 0 0 0 0.69064 1 41761 41761 3.9444 1.0552 1 20178000 50680 1374 34261 35045 58962 58962 -0.011188047797986655 QQVTILII 8 Unmodified _QQVTILII_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2991943359375 2 464.29731 926.580068 4.1329 0.0019189 -1.7625 -0.00081834 2.3704 0.0011006 464.2966029395717 99.29 0.19567 99.261 99.137 99.332 -0.028282 17 6 3 0 0 0 0.17994 1 55131 55131 77.984 6.0621 1 9399400 50681 2874 34262 35046 58963 58963 0.11384118971056978 QQVTILII 8 Unmodified _QQVTILII_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2979431152344 2 464.29731 926.580068 1.2899 0.00059889 0.263 0.00012211 1.5529 0.000721 464.2973701843105 101.07 0.1587 94.899 94.798 94.956 -6.1757 23 8 4 0 0 0 0.17994 1 67745 67745 77.984 0 1 222320000 50682 2874 34262 35046 58964 58964 0.11384118971056978 QQYAEVKY 8 Unmodified _QQYAEVKY_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000520294.5_1_8:109476316-109498824:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2572631835938 2 514.756007 1027.49746 -0.35549 -0.00018299 0.18178 9.357E-05 -0.17371 -8.9419E-05 515.2575704294251 41.834 0.20451 41.527 41.392 41.597 -0.30682 14 9 2 0 0 0 0.79669 1 22215 22215 8.5933 1.304 1 9126600 50683 2204 34263 35047 58965 58965 -0.01518822827756594 QQYAVFENIF 10 Unmodified _QQYAVFENIF_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3093872070312 2 629.808771 1257.60299 0.3698 0.0002329 -0.76199 -0.00047991 -0.39219 -0.00024701 629.8082082260469 62.618 0.2419 62.13 62.019 62.261 -0.48764 19 11 2 0 0 0 0.33553 1 34122 34122 25.399 2.2509 1 3501100 + 50684 20277 34264 35048 58966 58966 -0.015509067021639567 QQYAVFENIF 10 Unmodified _QQYAVFENIF_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.80859375 2 629.808771 1257.60299 0.69002 0.00043458 -0.61575 -0.0003878 0.074268 4.6775E-05 629.8083516286445 68.696 1.0452 68.721 68.282 69.327 0.025146 170 50 6 0 0 0 0.33553 1 37777 37777 25.399 0.40835 1 678120000 + 50685 20277 34264 35048 58967 58967 -0.015509067021639567 QQYAVFENIF 10 Unmodified _QQYAVFENIF_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8092041015625 2 629.808771 1257.60299 0.35329 0.0002225 0.034571 2.1773E-05 0.38786 0.00024428 629.8086938772987 78.359 2.0321 72.183 71.17 73.202 -6.1757 343 118 4 0 0 0 0.085354 1 51734 51734 49.933 7.8384 1 130200000 + 50686 20277 34264 35048 58968 58968 -0.015509067021639567 QQYRAENQI 9 Unmodified _QQYRAENQI_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5272521972656 3 383.859755 1148.55744 NaN NaN NaN NaN NaN NaN NaN 16.811 1 16.812 16.312 17.312 0.0010548 0 0 0 0.85798 1 8316 8316 0.23584 0 1 50687 10127 34265 35049 58969 58969 -0.010901321645178541 QQYRNWFLKEF 11 Unmodified _QQYRNWFLKEF_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 779.8917236328125 2 779.8937 1557.77285 -0.0070116 -5.4683E-06 -0.16827 -0.00013123 -0.17528 -0.0001367 779.8936215888771 82.989 0.30641 82.989 82.811 83.117 0 48 16 4 0 0 0 0.7453 1 46089 46089 0 0 1 2959500 50688 1799 34266 35050 58970 58970 0.016272093002271504 QQYWRGYRQ 9 Unmodified _QQYWRGYRQ_ 0 0 0 ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.3408203125 2 642.815253 1283.61595 -0.71307 -0.00045837 -1.8958 -0.0012186 -2.6088 -0.001677 642.8142502649115 34.517 0.15471 34.517 34.442 34.597 0 10 7 2 0 0 0 0.20727 1 18203 18203 7.9102 1.187 1 1408500 50689 12449 34267 35051 58971 58971 -0.014510307993987226 QQYWRGYRQ 9 Unmodified _QQYWRGYRQ_ 0 0 0 ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF ENST00000374514.7_1_1:24121362-24121572:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 642.815253 1283.61595 -0.47289 -0.00030398 -2.3708 -0.001524 -2.8437 -0.0018279 642.8145041626352 34.691 0.14793 34.499 34.393 34.541 -0.19131 -0.0089617 -0.00041972 NaN 7.9102 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2221200 50690 12449 34267 35051 -0.014510307993987226 QRAFCTMHF 9 Unmodified _QRAFCTMHF_ 0 0 0 ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF ENST00000277415.15_1_9:137989658-137989826:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8423461914062 3 380.840761 1139.50045 1.0698 0.00040743 2.5752 0.00098074 3.645 0.0013882 380.84171164003874 46.495 0.2232 46.462 46.349 46.572 -0.033417 18 10 2 0 0 0 0.54444 1 25026 25026 2.7352 0.99292 1 2003300 50691 11396 34268 35052 58972 58972 -0.06371594246252243 QRAGPEPVAAA 11 Unmodified _QRAGPEPVAAA_ 0 0 0 REV__nc|ENSG00000106348|P20839-3|IMPDH1 REV__nc|ENSG00000106348|P20839-3|IMPDH1 MSMS AL20221201_MKP_PDAC_01 4 356.1930847167969 3 356.192845 1065.55671 NaN NaN NaN NaN NaN NaN NaN 42.787 1 38.102 37.602 38.602 -4.6846 0 0 0 0.93669 1 25890 25890 2.2527 0.16672 1 + 50692 18502 34269 35053 58973 58973 0.026550731864290356 QRCVHDRF 8 Unmodified _QRCVHDRF_ 0 0 0 REV__ENST00000507414.1_1_5:7892894-7893736:+|nuORF REV__ENST00000507414.1_1_5:7892894-7893736:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2796630859375 2 530.758892 1059.50323 0.6135 0.00032562 -2.9628 -0.0015725 -2.3493 -0.0012469 530.7573608668462 53.316 0.25372 53.316 53.166 53.42 0 16 10 2 0 0 0 8.7369 1 29538 29538 13.508 0 1 3465700 + 50693 28101 34270 35054 58974 58974 -0.024140027970815936 QREGQRRCR 9 Unmodified _QREGQRRCR_ 0 0 0 ENSG00000184451|ENST00000332438|CCR10 ENSG00000184451|ENST00000332438|CCR10 ENSG00000184451|ENST00000332438|CCR10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5022888183594 3 396.875745 1187.60541 NaN NaN NaN NaN NaN NaN NaN 14.5 1 14.5 14 15 0 0 0 0 0.85852 1 6898 6898 0.20686 0.047535 1 50694 9259 34271 35055 58975 58975 0.019106632745206298 QREMEEEEDED 11 Unmodified _QREMEEEEDED_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.1802368164062 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 7.1046 1 7.02 6.52 7.52 -0.08463 0 0 0 0.9435 1 3496 3496 0 0 1 50695 4713;15149 34272 35056 58976 58976 -0.18107681073774984 QREMEEEEDED 11 Unmodified _QREMEEEEDED_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.1807861328125 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 8.0214 1 7.9298 7.4298 8.4298 -0.09156 0 0 0 0.9435 1 3940 3940 0 0 1 50696 4713;15149 34272 35056 58977 58977 -0.18107681073774984 QREMEEEEDED 11 Unmodified _QREMEEEEDED_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2073364257812 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 15.797 1 15.783 15.283 16.283 -0.014067 0 0 0 0.9435 1 7770 7770 0 0 1 50697 4713;15149 34272 35056 58978 58978 -0.18107681073774984 QREMEEEEDED 11 Unmodified _QREMEEEEDED_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.1818237304688 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 3.3666 1 3.3542 2.8542 3.8542 -0.012334 0 0 0 0.9435 1 1709 1709 0 0 1 50698 4713;15149 34272 35056 58979 58979 -0.18107681073774984 QREMEEEEDED 11 Unmodified _QREMEEEEDED_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.1809692382812 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 12.443 1 12.456 11.956 12.956 0.012355 0 0 0 0.9435 1 6137 6137 0 0 1 50699 4713;15149 34272 35056 58980 58980 -0.18107681073774984 QREPLYDLPWY 11 Unmodified _QREPLYDLPWY_ 0 0 0 ENSG00000147596|ENST00000276594|PRDM14 ENSG00000147596|ENST00000276594|PRDM14 ENSG00000147596|ENST00000276594|PRDM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2485656738281 3 493.913748 1478.71942 0.59238 0.00029258 -0.050282 -2.4835E-05 0.54209 0.00026775 493.91371651496115 55.322 0.23262 54.844 54.753 54.986 -0.47798 26 10 3 0 0 0 0.71036 1 30013 30013 1.3296 0 1 3239400 50700 5866 34273 35057 58981 58981 -0.000795882022657679 QRFEPHDTL 9 Unmodified _QRFEPHDTL_ 0 0 0 REV__nc|ENSG00000284680|Q96RD0|OR8B2 REV__nc|ENSG00000284680|Q96RD0|OR8B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5248413085938 3 381.524484 1141.55162 0.40047 0.00015279 0.55297 0.00021097 0.95343 0.00036376 381.5246984188594 48.464 0.21675 48.093 47.983 48.2 -0.37172 20 10 3 0 0 0 0.39863 1 26017 26017 8.1555 2.3721 1 4261400 + 50701 30012 34274 35058 58982 58982 -0.013492306761918371 QRFPVHCEI 9 Unmodified _QRFPVHCEI_ 0 0 0 ENST00000423462.6_1_10:16553279-16553402:+|nuORF ENST00000423462.6_1_10:16553279-16553402:+|nuORF ENST00000423462.6_1_10:16553279-16553402:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8583984375 3 376.858809 1127.5546 -0.39428 -0.00014859 0.74747 0.00028169 0.35319 0.0001331 376.8589726861295 24.378 0.30414 24.378 24.227 24.531 0 29 18 2 0 0 0 0.58865 1 12416 12416 1.0715 0 1 892250 50702 13133 34275 35059 58983 58983 -0.004076788230349848 QRFTAPTSQF 10 Unmodified _QRFTAPTSQF_ 0 0 0 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 ENSG00000178235|ENST00000674365|SLITRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8686218261719 3 394.86825 1181.58292 -0.087211 -3.4437E-05 1.1026 0.00043536 1.0153 0.00040093 394.86858033730607 15.73 0.2768 15.735 15.643 15.92 0.0057774 53 23 3 0 0 0 0.69064 1 7920 7920 3.8763 0 1 1117500 50703 8739 34276 35060 58984 58984 -0.0006065764209779445 QRGVPGPF 8 Unmodified _QRGVPGPF_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-7|HELLS;nc|ENSG00000119969|Q9NRZ9-8|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8915100097656 2 429.235045 856.455536 0.43035 0.00018472 1.0522 0.00045165 1.4826 0.00063637 429.23546829379825 54.939 0.53945 54.87 54.598 55.138 -0.068737 42 26 3 0 0 0 8.7369 1 29930 29930 0.79363 0 1 2261300 50704 3486 34277 35061 58985 58985 0.02156666274379404 QRHHREQRSG 10 Unmodified _QRHHREQRSG_ 0 0 0 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 ENSG00000165804|ENST00000360947|ZNF219 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880310058594 3 430.88893 1289.64496 NaN NaN NaN NaN NaN NaN NaN 32.313 1 32.313 31.813 32.813 0 0 0 0 0.99388 1 16871 16871 0.56317 0 1 50705 7390 34278 35062 58986 58986 0.011725065495966192 QRHLGGGA 8 Unmodified _QRHLGGGA_ 0 0 0 ENST00000243776.10_1_2:220408117-220408489:-|nuORF ENST00000243776.10_1_2:220408117-220408489:-|nuORF ENST00000243776.10_1_2:220408117-220408489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2147827148438 2 398.214643 794.414734 0.19377 7.7164E-05 0.02637 1.0501E-05 0.22014 8.7665E-05 398.21461920346707 74.806 0.47754 74.806 74.582 75.06 0 51 23 3 0 0 0 0.80975 2 41558 41558;41662 0.79363 0 1 5590800 50706 11113 34279 35063 58987;58988 58987 0.009303249547770065 QRHLGGGA 8 Unmodified _QRHLGGGA_ 0 0 0 ENST00000243776.10_1_2:220408117-220408489:-|nuORF ENST00000243776.10_1_2:220408117-220408489:-|nuORF ENST00000243776.10_1_2:220408117-220408489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2149047851562 2 398.214643 794.414734 0.73649 0.00029328 0.021318 8.489E-06 0.7578 0.00030177 398.21460375889876 75.501 0.30955 75.024 74.945 75.255 -0.47714 30 16 3 0 0 0 0.80975 1 41329 41329 0.79363 0 1 1650500 50707 11113 34279 35063 58989 58989 0.009303249547770065 QRIRRTFK 8 Unmodified _QRIRRTFK_ 0 0 0 ENST00000383693.7_1_3:100120443-100120494:+|nuORF ENST00000383693.7_1_3:100120443-100120494:+|nuORF ENST00000383693.7_1_3:100120443-100120494:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.5491943359375 3 368.896475 1103.66759 1.2745 0.00047016 2.6096 0.00096269 3.8842 0.0014329 369.2320543651384 35.519 0.31403 31.326 31.143 31.457 -4.1928 23 19 2 0 0 0 8.7369 1 20559 20559 4.897 0 1 5745400 50708 12636 34280 35064 58990 58990 0.11990757685180142 QRKAAGPV 8 Unmodified _QRKAAGPV_ 0 0 0 ENST00000464148.2_1_1:228296563-228296986:-|nuORF ENST00000464148.2_1_1:228296563-228296986:-|nuORF ENST00000464148.2_1_1:228296563-228296986:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7484741210938 2 413.748319 825.482085 NaN NaN NaN NaN NaN NaN NaN 33.281 1 33.122 32.622 33.622 -0.15918 0 0 0 0.97444 1 17356 17356 5.2307 0 1 50709 13710 34281 35065 58991 58991 0.062363551657085736 QRKDKKVI 8 Unmodified _QRKDKKVI_ 0 0 0 REV__nc|ENSG00000078304|Q13362-4|PPP2R5C REV__nc|ENSG00000078304|Q13362-4|PPP2R5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3261108398438 2 507.824558 1013.63456 0.32308 0.00016407 -0.76579 -0.00038888 -0.4427 -0.00022481 507.82417131524033 38.55 0.22276 38.567 38.46 38.683 0.01704 18 10 2 0 0 0 0.61462 1 20515 20515 24.674 1.9376 1 5280800 + 50710 17626 34282 35066 58992 58992 0.12829130842476388 QRKENLTI 8 Unmodified _QRKENLTI_ 0 0 0 REV__ENST00000398675.7_1_12:42480757-42480901:-|nuORF REV__ENST00000398675.7_1_12:42480757-42480901:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2909545898438 2 501.290548 1000.56654 0.15039 7.5389E-05 -1.0599 -0.00053132 -0.90951 -0.00045593 501.2897814109786 88.72 0.43769 88.768 88.539 88.977 0.047852 22 17 2 0 0 0 0.66338 1 49340 49340 20.454 1.1966 1 22829000 + 50711 26567 34283 35067 58993 58993 0.06628261191792717 QRKENLTI 8 Unmodified _QRKENLTI_ 0 0 0 REV__ENST00000398675.7_1_12:42480757-42480901:-|nuORF REV__ENST00000398675.7_1_12:42480757-42480901:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 501.290548 1000.56654 0.15039 7.5389E-05 -1.0599 -0.00053132 -0.90951 -0.00045593 501.2897814109786 88.72 0.43769 88.768 88.539 88.977 0.047852 0.068385 -0.0010983 NaN 20.454 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 22829000 + 50712 26567 34283 35067 0.06628261191792717 QRKFPMMMVY 10 Unmodified _QRKFPMMMVY_ 0 0 0 REV__nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL REV__nc|ENSG00000143889|Q8WVV9-3|HNRNPLL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.82568359375 2 665.827072 1329.63959 NaN NaN NaN NaN NaN NaN NaN 91.557 1 91.557 91.057 92.057 0 0 0 0 1.0019 1 50632 50632 0.45834 0 1 + 50713 20680;29678 34284 35068 58994 58994 -0.012043926730939347 QRLAGPAL 8 Unmodified _QRLAGPAL_ 0 0 0 REV__ENST00000402802.7_1_7:558720-558831:-|nuORF REV__ENST00000402802.7_1_7:558720-558831:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2513427734375 2 413.250695 824.486836 0.76914 0.00031785 0.50973 0.00021064 1.2789 0.00052849 413.2507269221398 43.953 0.41286 39.188 38.985 39.398 -4.7648 47 26 2 0 0 0 0.31612 1 26797 26797 53.576 5.2297 1 17732000 + 50714 26620 34285 35069 58995 58995 0.06757239308467433 QRLEHLQSF 9 Unmodified _QRLEHLQSF_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.5404663085938 3 386.540245 1156.59891 NaN NaN NaN NaN NaN NaN NaN 16.772 1 16.773 16.273 17.273 0.0010548 0 0 0 0.84737 1 8292 8292 2.4985 0.65425 1 + 50715 22247 34286 35070 58996 58996 0.026870485947938505 QRLGWAGL 8 Unmodified _QRLGWAGL_ 0 0 0 REV__ENSG00000181418|ENST00000421952|DDN REV__ENSG00000181418|ENST00000421952|DDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7570190429688 2 450.756144 899.497735 1.3735 0.0006191 0.70711 0.00031873 2.0806 0.00093784 450.7563112799 66.051 0.31117 66.06 65.891 66.202 0.0095596 29 15 3 0 0 0 0.80624 1 36228 36228 2.8892 0 1 7848700 + 50716 23204 34287 35071 58997 58997 0.043966416827515786 QRLIFRLLKLE 11 Unmodified _QRLIFRLLKLE_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MSMS AL20221201_MKP_PDAC_01 4 714.9562377929688 2 714.956104 1427.89765 NaN NaN NaN NaN NaN NaN NaN 104.59 1 98.417 97.917 98.917 -6.1757 0 0 0 0.94307 1 70035 70035 0.30703 0 1 50717 1832 34288 35072 58998 58998 0.20082126507463727 QRLKKKWLF 9 Unmodified _QRLKKKWLF_ 0 0 0 REV__ENSG00000129467|ENST00000418030|ADCY4 REV__ENSG00000129467|ENST00000418030|ADCY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2642517089844 3 416.264276 1245.771 NaN NaN NaN NaN NaN NaN NaN 103.42 1 103.38 102.88 103.88 -0.047928 0 0 0 0.86031 1 57436 57436 0.23584 0 1 + 50718 19667 34289 35073 58999 58999 0.15794245072970625 QRLLKHKVRV 10 Unmodified _QRLLKHKVRV_ 0 0 0 REV__ENSG00000163541|ENST00000393868|SUCLG1 REV__ENSG00000163541|ENST00000393868|SUCLG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.9180297851562 2 638.919855 1275.82516 NaN NaN NaN NaN NaN NaN NaN 103.86 1 103.81 103.31 104.31 -0.048737 0 0 0 0.99248 1 57670 57670 1.4819 0.28856 1 + 50719 21784 34290 35074 59000 59000 0.1982783722453405 QRLLKHKVRV 10 Unmodified _QRLLKHKVRV_ 0 0 0 REV__ENSG00000163541|ENST00000393868|SUCLG1 REV__ENSG00000163541|ENST00000393868|SUCLG1 MSMS AL20221201_MKP_PDAC_01 4 638.917724609375 2 638.919855 1275.82516 NaN NaN NaN NaN NaN NaN NaN 103.74 1 97.566 97.066 98.066 -6.1757 0 0 0 1.0024 1 69529 69529 0.40072 0.050084 1 + 50720 21784 34290 35074 59001 59001 0.1982783722453405 QRLNDDMKE 9 Unmodified _QRLNDDMKE_ 0 0 0 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7728881835938 2 574.771862 1147.52917 0.41121 0.00023635 -1.3529 -0.00077763 -0.94172 -0.00054128 574.7712265826215 39.625 0.32354 39.625 39.488 39.812 0 45 15 4 0 0 0 0.36964 1 21218 21218 13.906 2.2658 1 14862000 + 50721 22958 34291 35075 59002 59002 -0.03869198136112573 QRLNDDMKE 9 Unmodified _QRLNDDMKE_ 0 0 0 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 REV__nc|ENSG00000177034|Q5HYI7-5|MTX3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.771862 1147.52917 0.36361 0.00020899 -1.7715 -0.0010182 -1.4079 -0.0008092 574.7704683049781 40.056 0.21217 39.759 39.592 39.804 -0.29716 0.067026 -0.00040591 NaN 13.906 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 982490 + 50722 22958 34291 35075 -0.03869198136112573 QRLPGSQPF 9 Unmodified _QRLPGSQPF_ 0 0 0 ENSG00000176986|ENST00000345254|SEC24C ENSG00000176986|ENST00000345254|SEC24C ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2780151367188 2 515.277441 1028.54033 0.018526 9.5458E-06 1.0066 0.00051868 1.0251 0.00052822 515.2779763620409 31.785 0.29008 31.656 31.503 31.793 -0.12915 24 11 3 0 0 0 0.10734 1 16509 16509 32.305 0 1 3122700 50723 8643 34292 35076 59003 59003 0.02719992020342943 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2367553710938 4 407.23665 1624.9175 0.39418 0.00016052 -0.5662 -0.00023058 -0.17202 -7.0053E-05 407.4871972588106 24.404 0.38549 21.577 21.428 21.814 -2.8273 54 21 3 0 0 0 0.74429 1 13373 13373 0.094841 0.011491 1 12852000 + 50724 25036 34293 35077 59004 59004 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 407.23665 1624.9175 -0.091218 -3.7147E-05 -1.425 -0.00058031 -1.5162 -0.00061746 407.2355647911924 21.579 0.064827 21.593 21.582 21.647 0.013796 0.008151 -0.0012513 NaN 0.094841 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2964000 + 50725 25036 34293 35077 0.130033152907572 QRLQRRQLWWR 11 Unmodified _QRLQRRQLWWR_ 0 0 0 REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF REV__ENST00000262919.9_1_20:3451704-3451788:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 4 407.23665 1624.9175 0.39418 0.00016052 -0.5662 -0.00023058 -0.17202 -7.0053E-05 407.4871972588106 24.404 0.38549 21.577 21.428 21.814 -2.8273 -0.008151 0.00014768 NaN 0.094841 54 21 3 NaN NaN NaN NaN 0 NaN NaN 0 12852000 + 50726 25036 34293 35077 0.130033152907572 QRLRKWRRERH 11 Unmodified _QRLRKWRRERH_ 0 0 0 ENST00000563197.5_2_16:30007482-30007590:+|nuORF ENST00000563197.5_2_16:30007482-30007590:+|nuORF ENST00000563197.5_2_16:30007482-30007590:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 810.9713134765625 2 810.974548 1619.93454 NaN NaN NaN NaN NaN NaN NaN 87.018 1 87.076 86.576 87.576 0.05822 0 0 0 0.94307 1 48353 48353 0.30703 0 1 50727 15355 34294 35078 59005 59005 0.14937235896559287 QRLSDVAFI 9 Unmodified _QRLSDVAFI_ 0 0 0 REV__ENSG00000066777|ENST00000262215|ARFGEF1;REV__ENSG00000124198|ENST00000371917|ARFGEF2 REV__ENSG00000066777|ENST00000262215|ARFGEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1968688964844 3 350.197708 1047.57129 NaN NaN NaN NaN NaN NaN NaN 28.991 1 28.929 28.429 29.429 -0.062159 0 0 0 0.85447 1 14982 14982 0.96228 0.33545 1 + 50728 17408;19426 34295 35079 59006 59006 0.049411453345555856 QRLTEDLEYHE 11 Unmodified _QRLTEDLEYHE_ 0 0 0 ENSG00000110048|ENST00000263847|OSBP;ENST00000528903.1_1_11:59361446-59368013:-|nuORF ENSG00000110048|ENST00000263847|OSBP ENSG00000110048|ENST00000263847|OSBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.8379516601562 2 716.838788 1431.66302 -0.0081296 -5.8276E-06 0.48934 0.00035078 0.48121 0.00034495 716.83881741971 96.317 0.32589 96.317 96.163 96.489 0 52 25 3 0 0 0 0.74046 1 53292 53292 1.3295 0.9789 1 650100 50729 2695 34296 35080 59007 59007 -0.03554260829582745 QRMDILDV 8 Unmodified _QRMDILDV_ 0 0 0 ENST00000564507.5_1_16:1551718-1556512:+|nuORF;ENSG00000100726|ENST00000262319|TELO2 ENST00000564507.5_1_16:1551718-1556512:+|nuORF ENST00000564507.5_1_16:1551718-1556512:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2874450683594 2 495.257859 988.501166 NaN NaN NaN NaN NaN NaN NaN 103.71 1 103.66 103.16 104.16 -0.048019 0 0 0 0.97444 1 57593 57593 2.5775 0 1 50730 1868 34297 35081 59008 59008 0.006455236744500326 QRMLMVQCQ 9 Unmodified _QRMLMVQCQ_ 0 0 0 REV__ENST00000414613.1_1_2:61164276-61164498:-|nuORF REV__ENST00000414613.1_1_2:61164276-61164498:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5166015625 3 379.51729 1135.53004 NaN NaN NaN NaN NaN NaN NaN 16.123 1 16.123 15.623 16.623 0 0 0 0 0.85798 1 7835 7835 0.23584 0 1 + 50731 26749 34298 35082 59009 59009 -0.032303982924304364 QRMVQYRRP 9 Unmodified _QRMVQYRRP_ 0 0 0 REV__nc|ENSG00000167447|Q8ND04-3|SMG8 REV__nc|ENSG00000167447|Q8ND04-3|SMG8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.890869140625 3 411.892624 1232.65604 NaN NaN NaN NaN NaN NaN NaN 23.983 1 23.983 23.483 24.483 0 0 0 0 0.85798 1 12240 12240 0.23584 0.028987 1 + 50732 22211 34299 35083 59010 59010 0.04902192599524824 QRNGEGTAPIY 11 Unmodified _QRNGEGTAPIY_ 0 0 0 REV__ENST00000454305.1_1_1:77533610-77544072:+|nuORF REV__ENST00000454305.1_1_1:77533610-77544072:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.2969970703125 2 603.299101 1204.58365 0.0059605 3.596E-06 -2.3624 -0.0014252 -2.3564 -0.0014216 603.2979736252161 19.847 0.11527 19.854 19.779 19.894 0.0078487 8 5 2 0 0 0 0.71341 1 10119 10119 2.9952 0 1 316940 + 50733 27237 34300 35084 59011 59011 -0.010458629930553798 QRNILKPR 8 Unmodified _QRNILKPR_ 0 0 0 ENSG00000112137|ENST00000332995|PHACTR1 ENSG00000112137|ENST00000332995|PHACTR1 ENSG00000112137|ENST00000332995|PHACTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8238525390625 2 512.82235 1023.63015 1.4443 0.00074069 0.98368 0.00050445 2.428 0.0012451 512.8228019495036 106.35 0.47731 100.17 100.06 100.54 -6.1757 111 84 2 0 0 0 0.80676 1 71260 71260 2.5775 0 1 2703000 50734 2861 34301 35085 59012 59012 0.11927666419558136 QRPGPCYE 8 Unmodified _QRPGPCYE_ 0 0 0 ENST00000403150.5_1_7:1578052-1578815:+|nuORF ENST00000403150.5_1_7:1578052-1578815:+|nuORF ENST00000403150.5_1_7:1578052-1578815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2132873535156 2 475.213452 948.412351 0.26812 0.00012741 0.48791 0.00023186 0.75603 0.00035928 475.2135044676652 63.35 0.44655 63.35 63.096 63.543 0 56 22 3 0 0 0 0.78849 1 35375 35375 9.3474 9.3474 1 14636000 50735 12901 34302 35086 59013 59013 -0.06391891565226615 QRPPTIVL 8 Unmodified _QRPPTIVL_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.2878112792969 2 462.287277 922.560001 0.69511 0.00032134 0.10587 4.8943E-05 0.80098 0.00037029 462.28728567486286 50.122 0.48117 49.73 49.49 49.971 -0.3923 72 23 4 0 0 0 0.17994 1 27034 27034 77.984 24.409 1 58655000 50736 4313 34303 35087 59014 59014 0.09562368031083679 QRPPTIVL 8 Unmodified _QRPPTIVL_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2876586914062 2 462.287277 922.560001 1.1515 0.00053234 0.16608 7.6778E-05 1.3176 0.00060912 462.28729645558076 49.799 0.37841 49.75 49.549 49.927 -0.048824 48 18 4 0 0 0 0.30525 2 26879 26879;26982 54.774 12.704 1 7730100 50737 4313 34303 35087 59015;59016 59015 0.09562368031083679 QRPPTIVL 8 Unmodified _QRPPTIVL_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM;nc|ENSG00000131263|Q9NVW2-2|RLIM ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.287841796875 2 462.287277 922.560001 0.7351 0.00033983 1.1303 0.00052252 1.8654 0.00086235 462.287874865365 54.611 0.58736 48.746 48.485 49.072 -5.8653 96 36 4 0 0 0 0.28079 2 34737 34602;34737 57.471 17.023 1 204670000 50738 4313 34303 35087 59017;59018 59018 0.09562368031083679 QRPQLHEL 8 Unmodified _QRPQLHEL_ 0 0 0 REV__ENST00000393965.7_1_2:74701806-74702394:-|nuORF REV__ENST00000393965.7_1_2:74701806-74702394:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7857360839844 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 88.493 1 88.493 87.993 88.993 0 0 0 0 0.97444 1 48981 48981 2.5775 0.27475 1 + 50739 26434 34304 35088 59019 59019 0.04223394394614388 QRPRESYQM 9 Unmodified _QRPRESYQM_ 0 0 0 ENSG00000137845|ENST00000260408|ADAM10;nc|ENSG00000137845|O14672-2|ADAM10;ENST00000482945.5_1_15:58889748-58902828:-|nuORF;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.1954040527344 3 398.86099 1193.56114 0.92783 0.00037007 0.34637 0.00013815 1.2742 0.00050823 398.8610304645858 18.817 0.25818 16.196 16.076 16.334 -2.6215 26 17 2 0 0 0 0.039985 2 9958 9922;9958 38.615 25.742 1 3010300 50740 4983;12784 34305 35089 59020;59021 59021 -0.02789785662344002 QRQARWFWEAY 11 Unmodified _QRQARWFWEAY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2799072265625 3 514.252987 1539.73713 -0.17512 -9.0058E-05 -0.99866 -0.00051356 -1.1738 -0.00060362 514.5859703481053 29.384 0.14693 29.384 29.285 29.432 0 11 6 2 0 0 0 0.306 1 15206 15206 0.45452 0 1 922240 50741 6106 34306 35090 59022 59022 -0.011148281566875085 QRQASSPPESF 11 Unmodified _QRQASSPPESF_ 0 0 0 REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.2946166992188 2 617.296559 1232.57856 0.78851 0.00048674 0.57472 0.00035477 1.3632 0.00084152 617.7993422461957 50.997 0.25256 50.997 50.833 51.085 0 30 13 3 0 0 0 0.15156 1 28104 28104 36.506 4.2007 1 8164100 + 50742 26833 34307 35091 59023 59023 -0.028421668556802615 QRQASSPPESF 11 Unmodified _QRQASSPPESF_ 0 0 0 REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 617.296559 1232.57856 0.78851 0.00048674 0.57472 0.00035477 1.3632 0.00084152 617.7993422461957 50.997 0.25256 50.997 50.833 51.085 0 -0.074164 -0.0013992 NaN 36.506 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8164100 + 50743 26833 34307 35091 -0.028421668556802615 QRQASSPPESF 11 Unmodified _QRQASSPPESF_ 0 0 0 REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF REV__ENST00000420434.7_1_2:231177411-231177723:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 617.296559 1232.57856 -0.011727 -7.2388E-06 2.5687 0.0015857 2.557 0.0015784 617.2974512040026 51.564 0.22108 51.146 51.041 51.262 -0.41826 0.074164 0.0010626 NaN 36.506 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 8762700 + 50744 26833 34307 35091 -0.028421668556802615 QRQCEAESW 9 Unmodified _QRQCEAESW_ 0 0 0 REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7401123046875 2 568.743105 1135.47166 NaN NaN NaN NaN NaN NaN NaN 48.191 1 48.191 47.691 48.691 0 0 0 0 0.6032 1 26425 26425 12.532 3.1484 1 + 50745 19915 34308 35092 59024 59024 -0.09066040341690496 QRQCPQYIF 9 Unmodified _QRQCPQYIF_ 0 0 0 REV__ENSG00000078804|ENST00000374810|TP53INP2 REV__ENSG00000078804|ENST00000374810|TP53INP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1963195800781 3 394.862331 1181.56516 -0.51694 -0.00020412 -0.32135 -0.00012689 -0.83829 -0.00033101 394.8622457255502 25.773 0.1661 25.773 25.695 25.862 0 13 7 2 0 0 0 0.5029 1 13229 13229 4.5289 0 1 935160 + 50746 17637 34309 35093 59025 59025 -0.01835696168609502 QRQDIAFAY 9 Unmodified _QRQDIAFAY_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2803344726562 2 556.28018 1110.54581 0.35675 0.00019846 0.011272 6.2702E-06 0.36803 0.00020473 556.2801481789423 45.525 0.2754 45.525 45.429 45.704 0 39 14 4 0 0 0 0.009483 1 24813 24813 81.89 27.117 1 41260000 50747 9079 34310 35094 59026 59026 -0.00504329187856456 QRQDIAFAY 9 Unmodified _QRQDIAFAY_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2797241210938 2 556.28018 1110.54581 NaN NaN NaN NaN NaN NaN NaN 45.884 1 45.56 45.06 46.06 -0.32425 0 0 0 0.053277 1 24535 24535 56.177 10.156 1 50748 9079 34310 35094 59027 59027 -0.00504329187856456 QRQDRPFFLYY 11 Unmodified _QRQDRPFFLYY_ 0 0 0 nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA;ENST00000551731.1_1_22:51065210-51065465:-|nuORF nc|ENSG00000100299|P15289-2|ARSA nc|ENSG00000100299|P15289-2|ARSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9469909667969 4 383.946576 1531.7572 1.3968 0.0005363 0.1763 6.769E-05 1.5731 0.00060399 383.94665453563374 83.345 0.43681 77.17 76.985 77.422 -6.1757 52 22 3 0 0 0 0.73992 1 54913 54913 0.50596 0 1 16639000 50749 1788 34311 35095 59028 59028 0.012589227832449978 QRQGLPRQAL 10 Unmodified _QRQGLPRQAL_ 0 0 0 REV__ENST00000465296.1_1_2:120189667-120195013:+|nuORF REV__ENST00000465296.1_1_2:120189667-120195013:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8406982421875 2 583.841271 1165.66799 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.72 103.22 104.22 -0.048737 0 0 0 0.99091 1 57622 57622 1.6526 1.0511 1 + 50750 27389 34312 35096 59029 59029 0.0917813261437459 QRQQSISY 8 Unmodified _QRQQSISY_ 0 0 0 REV__ENSG00000115226|ENST00000264703|FNDC4 REV__ENSG00000115226|ENST00000264703|FNDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7347717285156 2 505.256705 1008.49886 -0.12572 -6.3522E-05 -0.19749 -9.9785E-05 -0.32322 -0.00016331 505.2564575518122 26.367 0.30072 26.367 26.187 26.488 0 21 14 2 0 0 0 0.79783 1 13615 13615 7.9102 1.7044 1 1002300 + 50751 18959 34313 35097 59030 59030 -0.00505188738986817 QRQRERYKNWL 11 Unmodified _QRQRERYKNWL_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 788.927978515625 2 788.926397 1575.83824 NaN NaN NaN NaN NaN NaN NaN 96.869 1 96.862 96.362 97.362 -0.007019 0 0 0 0.94304 1 53794 53794 0.96228 0.65524 1 + 50752 19026 34314 35098 59031 59031 0.07335623545986891 QRQRRVSCNWI 11 Unmodified _QRQRRVSCNWI_ 0 0 0 REV__ENST00000377245.8_3_9:71789338-71831310:+|nuORF REV__ENST00000377245.8_3_9:71789338-71831310:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.5885009765625 3 482.589604 1444.74698 NaN NaN NaN NaN NaN NaN NaN 37.111 1 32.827 32.327 33.327 -4.2835 0 0 0 0.78351 1 21748 21748 12.856 1.2246 1 + 50753 26244 34315 35099 59032 59032 0.04240036577016326 QRQWRERERQE 11 Unmodified _QRQWRERERQE_ 0 0 0 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.9059448242188 2 800.906193 1599.79783 NaN NaN NaN NaN NaN NaN NaN 63.179 1 63.179 62.679 63.679 0 0 0 0 0.9435 1 35243 35243 0 0 1 + 50754 20812 34316 35100 59033 59033 0.0219265715554684 QRREDDKLVEY 11 Unmodified _QRREDDKLVEY_ 0 0 0 REV__ENST00000447548.5_3_10:22208848-22292309:-|nuORF REV__ENST00000447548.5_3_10:22208848-22292309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2464904785156 3 484.247678 1449.72121 -0.26228 -0.00012701 -0.05205 -2.5205E-05 -0.31433 -0.00015222 484.24746766908055 19.718 0.13157 19.718 19.67 19.801 0 28 18 2 0 0 0 0.73992 1 9885 9885 0.50596 0.50596 1 930970 + 50755 20180 34317 35101 59034 59034 0.014334208157151807 QRRGRSIASNR 11 Unmodified _QRRGRSIASNR_ 0 0 0 REV__ENST00000262520.10_1_16:30996539-30997136:+|nuORF REV__ENST00000262520.10_1_16:30996539-30997136:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.8681030273438 2 650.868883 1299.72321 0.28376 0.00018469 -0.92358 -0.00060113 -0.63982 -0.00041644 650.8682007954637 98.87 0.26855 98.676 98.514 98.782 -0.19321 26 8 4 0 0 0 0.53952 1 53969 53969 14.405 14.405 1 12610000 + 50756 25024 34318 35102 59035 59035 0.08533939134827051 QRRLLHRKKRL 11 Unmodified _QRRLLHRKKRL_ 0 0 0 REV__ENSG00000178605|ENST00000326153|GTPBP6 REV__ENSG00000178605|ENST00000326153|GTPBP6 MSMS AL20221201_MKP_PDAC_01 4 502.0001220703125 3 501.998815 1502.97462 NaN NaN NaN NaN NaN NaN NaN 40.548 1 36.019 35.519 36.519 -4.5294 0 0 0 0.94337 1 24229 24229 0.094841 0.094841 1 + 50757 23053 34319 35103 59036 59036 0.2432478256714603 QRRLLHRKKRL 11 Unmodified _QRRLLHRKKRL_ 0 0 0 REV__ENSG00000178605|ENST00000326153|GTPBP6 REV__ENSG00000178605|ENST00000326153|GTPBP6 MSMS AL20221201_MKP_PDAC_01 4 502.0004577636719 3 501.998815 1502.97462 NaN NaN NaN NaN NaN NaN NaN 42.355 1 37.67 37.17 38.17 -4.6846 0 0 0 0.94337 1 25576 25576 0.094841 0.094841 1 + 50758 23053 34319 35103 59037 59037 0.2432478256714603 QRRLSPPECL 10 Unmodified _QRRLSPPECL_ 0 0 0 ENSG00000116819|ENST00000373235|TFAP2E;ENSG00000008196|ENST00000393655|TFAP2B;nc|ENSG00000008196|Q92481-2|TFAP2B;nc|ENSG00000137203|P05549-2|TFAP2A;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000137203|P05549-6|TFAP2A;nc|ENSG00000137203|P05549|TFAP2A;ENSG00000137203|ENST00000379613|TFAP2A;nc|ENSG00000087510|Q92754-2|TFAP2C;TFAP2C|p.P380Rfs*57|1|0.25|ENSG00000087510|chr20:56637799-56637800|CA/-|frameshift_variant;ENSG00000087510|ENST00000201031|TFAP2C ENSG00000116819|ENST00000373235|TFAP2E;nc|ENSG00000137203|P05549-5|TFAP2A;nc|ENSG00000087510|Q92754-2|TFAP2C ENSG00000116819|ENST00000373235|TFAP2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2168273925781 3 400.216885 1197.62883 -0.34677 -0.00013878 0.5008 0.00020043 0.15403 6.1646E-05 400.21704257628966 51.465 0.27169 51.411 51.286 51.558 -0.053871 37 13 3 0 0 0 0.65023 1 27934 27934 8.4443 2.2525 1 20905000 50759 3258;4911;1473 34320 35104 59038 59038 0.03791664268487693 QRRMKEEQERI 11 Unmodified _QRRMKEEQERI_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.600341796875 3 501.600058 1501.77834 -0.59018 -0.00029604 0.41046 0.00020589 -0.17972 -9.0146E-05 501.60037218332195 34.7 0.23837 34.508 34.393 34.631 -0.19132 33 10 4 0 0 0 0.631 1 18116 18116 9.7643 2.7272 1 17369000 + 50760 24638 34321 35105 59039 59039 0.047525648204100435 QRRMKEEQERI 11 Unmodified _QRRMKEEQERI_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.6006469726562 3 501.600058 1501.77834 0.098759 4.9537E-05 -0.049543 -2.4851E-05 0.049216 2.4687E-05 501.9344298651686 34.45 0.27913 34.477 34.327 34.606 0.027401 40 12 4 0 0 0 0.50268 1 18136 18136 16.275 9.2375 1 19961000 + 50761 24638 34321 35105 59040 59040 0.047525648204100435 QRRMKEEQERI 11 Unmodified _QRRMKEEQERI_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 501.600058 1501.77834 -0.59018 -0.00029604 0.41046 0.00020589 -0.17972 -9.0146E-05 501.60037218332195 34.7 0.23837 34.508 34.393 34.631 -0.19132 0.015656 0.00035282 NaN 16.275 33 10 4 NaN NaN NaN NaN 0 NaN NaN 0 17369000 + 50762 24638 34321 35105 0.047525648204100435 QRRMKEEQERI 11 Unmodified _QRRMKEEQERI_ 0 0 0 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 REV__nc|ENSG00000273756|P0DX02|GOLGA6L26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 501.600058 1501.77834 0.098759 4.9537E-05 -0.049543 -2.4851E-05 0.049216 2.4687E-05 501.9344298651686 34.45 0.27913 34.477 34.327 34.606 0.027401 -0.015656 -0.0003394 NaN 16.275 40 12 4 NaN NaN NaN NaN 0 NaN NaN 0 19961000 + 50763 24638 34321 35105 0.047525648204100435 QRRPGRSYFLY 11 Unmodified _QRRPGRSYFLY_ 0 0 0 REV__ENSG00000268089|ENST00000598523|GABRQ REV__ENSG00000268089|ENST00000598523|GABRQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.5932922363281 3 481.593232 1441.75787 1.3058 0.00062888 -2.1391 -0.0010302 -0.83326 -0.00040129 481.5926719173764 40.858 0.48055 36.261 36.015 36.495 -4.5968 98 29 4 0 0 0 0.69838 1 24483 24483 4.4062 1.3339 1 126460000 + 50764 24616 34322 35106 59041 59041 0.054657622229569824 QRRQLQKRIEY 11 Unmodified _QRRQLQKRIEY_ 0 0 0 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 nc|ENSG00000204053|P12525|MYCLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 759.438720703125 2 759.436598 1516.85864 0.75979 0.00057702 0.042442 3.2232E-05 0.80224 0.00060925 759.4379475207189 101.83 0.3571 95.657 95.582 95.939 -6.1757 91 20 6 0 0 0 0.7453 1 68446 68446 0 0 1 35766000 50765 16499 34323 35107 59042 59042 0.1208879420582889 QRRQLWWWRRR 11 Unmodified _QRRQLWWWRRR_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 863.9846801757812 2 863.984915 1725.95528 NaN NaN NaN NaN NaN NaN NaN 88.233 1 88.287 87.787 88.787 0.053352 0 0 0 0.9435 1 49083 49083 0 0 1 + 50766 29159 34324 35108 59043 59043 0.12133826276203763 QRRRVKKRHR 10 Unmodified _QRRRVKKRHR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.970947265625 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 14.726 1 12.224 11.724 12.724 -2.5029 0 0 0 1.0047 1 7500 7500 0.15932 0.064481 1 50767 5582 34325 35109 59044 59044 0.19925885559018752 QRRYRELLE 9 Unmodified _QRRYRELLE_ 0 0 0 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 ENSG00000079313|ENST00000170168|REXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.57080078125 3 421.570316 1261.68912 -0.50267 -0.00021191 1.3117 0.00055297 0.80901 0.00034106 421.9050657229437 19.55 0.07703 19.55 19.508 19.585 0 17 10 2 0 0 0 0.60285 1 9775 9775 1.1933 0 1 751350 50768 1271 34326 35110 59045 59045 0.06874097923241607 QRSETINTSSF 11 Unmodified _QRSETINTSSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.3063354492188 2 635.307123 1268.59969 -1.2068 -0.00076669 -0.13668 -8.6836E-05 -1.3435 -0.00085353 635.3070577880335 32.55 0.23292 32.55 32.462 32.695 0 43 13 4 0 0 0 0.065225 1 16979 16979 47.594 3.822 1 18875000 50769 10134 34327 35111 59046 59046 -0.023862015468012032 QRSETINTSSF 11 Unmodified _QRSETINTSSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3065795898438 2 635.307123 1268.59969 -0.5275 -0.00033513 0.46532 0.00029562 -0.06218 -3.9503E-05 635.3074559170614 32.603 0.38784 32.474 32.287 32.675 -0.12915 62 16 5 0 0 0 0.047603 2 16912 16912;17022 51.415 7.6428 1 81677000 50770 10134 34327 35111 59047;59048 59047 -0.023862015468012032 QRSETINTSSF 11 Unmodified _QRSETINTSSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.306396484375 2 635.307123 1268.59969 -0.15946 -0.0001013 -0.12359 -7.8515E-05 -0.28304 -0.00017982 635.3070635344022 32.478 0.32445 32.508 32.319 32.643 0.029743 36 12 4 0 0 0 0.047603 1 17013 17013 51.415 7.6428 1 8610200 50771 10134 34327 35111 59049 59049 -0.023862015468012032 QRSETINTSSF 11 Unmodified _QRSETINTSSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3076171875 2 635.307123 1268.59969 0.91986 0.00058439 -0.33109 -0.00021035 0.58877 0.00037405 635.3069685870886 36.956 0.58561 32.673 32.388 32.974 -4.2835 118 35 4 0 0 0 0.08701 3 21486 21486;21614;21743 43.982 7.4756 1 150680000 50772 10134 34327 35111 59050;59051;59052 59050 -0.023862015468012032 QRSETINTSSF 11 Unmodified _QRSETINTSSF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 635.307123 1268.59969 -1.2068 -0.00076669 -0.13668 -8.6836E-05 -1.3435 -0.00085353 635.3070577880335 32.55 0.23292 32.55 32.462 32.695 0 -0.0009549 -9.6109E-05 NaN 51.415 43 13 4 NaN NaN NaN NaN 0 NaN NaN 0 18875000 50773 10134 34327 35111 -0.023862015468012032 QRSPQSRTA 9 Unmodified _QRSPQSRTA_ 0 0 0 ENST00000230538.11_1_6:112575672-112575810:-|nuORF ENST00000230538.11_1_6:112575672-112575810:-|nuORF ENST00000230538.11_1_6:112575672-112575810:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.27734375 2 515.773054 1029.53155 0.099826 5.1488E-05 0.30802 0.00015887 0.40785 0.00021036 515.7747560714051 23.226 0.14747 20.447 20.424 20.572 -2.7784 19 14 2 0 0 0 0.16895 1 12565 12565 18.146 2.2992 1 15618000 50774 11070 34328 35112 59053 59053 0.017970183838770026 QRSTQEKLH 9 Unmodified _QRSTQEKLH_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.302734375 2 563.801811 1125.58907 0.38736 0.00021839 -0.56581 -0.000319 -0.17845 -0.00010061 563.8018103785354 24.713 0.42938 21.83 21.578 22.008 -2.8831 84 24 5 0 0 0 0.37804 1 13388 13388 13.508 0.46542 1 26420000 50775 5543 34329 35113 59054 59054 0.031298605894335196 QRTPKIQV 8 Unmodified _QRTPKIQV_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.29541015625 2 485.295633 968.576714 NaN NaN NaN NaN NaN NaN NaN 29.518 1 29.548 29.048 30.048 0.030106 0 0 0 0.41481 1 15409 15409 52.268 18.166 1 50776 7522 34330 35114 59055 59055 0.09116868917033116 QRTPPGLPLPR 11 Unmodified _QRTPPGLPLPR_ 0 0 0 REV__ENSG00000266524|ENST00000580279|GDF10 REV__ENSG00000266524|ENST00000580279|GDF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2475891113281 3 411.247173 1230.71969 -0.34069 -0.00014011 0.68925 0.00028345 0.34856 0.00014334 411.2474866726782 30.887 0.25591 30.917 30.759 31.015 0.030106 20 10 3 0 0 0 0.51719 1 16154 16154 15.538 6.2947 1 2034600 + 50777 24607 34331 35115 59056 59056 0.11355876308266488 QRTPYYACPQ 10 Unmodified _QRTPYYACPQ_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.7619018554688 2 613.784773 1225.55499 0.51424 0.00031563 3.0606 0.0018785 3.5748 0.0021942 613.7867962438196 73.541 0.28761 73.585 73.405 73.692 0.043983 24 12 2 0 0 0 0.23325 1 40489 40489 10.074 6.1295 1 1353500 50778 1726 34332 35116 59057 59057 -0.048763038938432146 QRTSPTNPHQH 11 Unmodified _QRTSPTNPHQH_ 0 0 0 nc|ENSG00000196739|Q8IZC6-3|COL27A1;ENSG00000196739|ENST00000356083|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 nc|ENSG00000196739|Q8IZC6-3|COL27A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826599121094 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 78.215 1 77.729 77.229 78.229 -0.48596 0 0 0 0.94184 1 42837 42837 0.40827 0 1 50779 9866 34333 35117 59058 59058 -0.016251376386890115 QRTTRLALL 9 Unmodified _QRTTRLALL_ 0 0 0 REV__ENSG00000180914|ENST00000316793|OXTR REV__ENSG00000180914|ENST00000316793|OXTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8930053710938 3 357.892619 1070.65603 0.344 0.00012312 -1.7346 -0.0006208 -1.3906 -0.00049768 357.8927596593105 40.475 0.29517 40.48 40.337 40.633 0.0050545 18 13 2 0 0 0 0.34748 1 21598 21598 14.957 0.55178 1 2141200 + 50780 23174 34334 35118 59059 59059 0.12352515871180003 QRTTRLALL 9 Unmodified _QRTTRLALL_ 0 0 0 REV__ENSG00000180914|ENST00000316793|OXTR REV__ENSG00000180914|ENST00000316793|OXTR MSMS AL20221201_MKP_PDAC_01 4 357.8934020996094 3 357.892619 1070.65603 NaN NaN NaN NaN NaN NaN NaN 44.695 1 39.843 39.343 40.343 -4.852 0 0 0 0.56988 1 27315 27315 13.615 0.5724 1 + 50781 23174 34334 35118 59060 59060 0.12352515871180003 QRVKFLNYL 9 Unmodified _QRVKFLNYL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20221201_MKP_PDAC_01 4 394.2338256835938 3 394.232752 1179.67643 NaN NaN NaN NaN NaN NaN NaN 89.132 1 82.956 82.456 83.456 -6.1757 0 0 0 0.7243 1 58826 58826 5.2969 1.4206 1 50782 9779 34335 35119 59061 59061 0.0937768653097919 QRWCRRSSAR 10 Unmodified _QRWCRRSSAR_ 0 0 0 REV__ENST00000275364.7_1_7:2768725-2768878:-|nuORF REV__ENST00000275364.7_1_7:2768725-2768878:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 436.2615356445312 3 435.895028 1304.66325 0.9644 0.00042038 2.4344 0.0010611 3.3988 0.0014815 435.8957354894794 35.148 0.32597 31.053 30.882 31.208 -4.0951 44 18 3 0 0 0 0.23356 1 20323 20323 11.518 1.7536 1 21676000 + 50783 25169 34336 35120 59062 59062 0.023109251999585467 QRWFFFFFFF 10 Unmodified _QRWFFFFFFF_ 0 0 0 REV__AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|11|1|anti-sense REV__AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|11|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.9165649414062 3 506.916764 1517.72846 NaN NaN NaN NaN NaN NaN NaN 19.701 1 19.73 19.23 20.23 0.028357 0 0 0 1.0047 1 9949 9949 0.15932 0 1 + 50784 16712 34337 35121 59063 59063 -0.009691500552662546 QRWRRQQWQDM 11 Unmodified _QRWRRQQWQDM_ 0 0 0 REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.3932495117188 2 809.394407 1616.77426 -0.0033016 -2.6723E-06 -0.37754 -0.00030558 -0.38084 -0.00030825 809.3935164962509 99.538 0.1189 99.538 99.473 99.592 0 8 3 3 0 0 0 0.74244 1 54973 54973 0.26902 0 1 1421700 + 50785 26772 34338 35122 59064 59064 -0.009454798826254773 QRWRRQQWQDM 11 Unmodified _QRWRRQQWQDM_ 0 0 0 REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 809.394407 1616.77426 -0.0033016 -2.6723E-06 -0.37754 -0.00030558 -0.38084 -0.00030825 809.3935164962509 99.538 0.1189 99.538 99.473 99.592 0 0.028417 -0.0007382 NaN 0.26902 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 1421700 + 50786 26772 34338 35122 -0.009454798826254773 QRWRRQQWQDM 11 Unmodified _QRWRRQQWQDM_ 0 0 0 REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF REV__ENST00000416426.6_2_17:55729477-55752284:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 809.394407 1616.77426 -0.060019 -4.8579E-05 1.0839 0.00087734 1.0239 0.00082876 809.3946523642813 99.639 0.11832 99.481 99.407 99.525 -0.1575 -0.028417 0.0016276 NaN 0.26902 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 813120 + 50787 26772 34338 35122 -0.009454798826254773 QRYCLLSLWD 10 Unmodified _QRYCLLSLWD_ 0 0 0 ENST00000584437.5_1_17:56494777-56494825:-|nuORF ENST00000584437.5_1_17:56494777-56494825:-|nuORF ENST00000584437.5_1_17:56494777-56494825:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8855895996094 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 47.021 1 47.021 46.521 47.521 0 0 0 0 0.9997 1 25730 25730 0.69767 0 1 50788 15596 34339 35123 59065 59065 -0.002748713086020871 QRYFDRLLY 9 Unmodified _QRYFDRLLY_ 0 0 0 REV__ENST00000482467.1_1_1:91486538-91487250:-|nuORF REV__ENST00000482467.1_1_1:91486538-91487250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.33837890625 2 637.33803 1272.66151 0.050172 3.1977E-05 -0.43106 -0.00027473 -0.38089 -0.00024275 637.3377475913081 67.036 0.29663 66.552 66.377 66.674 -0.48323 27 13 3 0 0 0 0.25681 1 36587 36587 19.257 2.1441 1 1941900 + 50789 27720 34340 35124 59066 59066 0.036081946630019957 QRYFDRLLY 9 Unmodified _QRYFDRLLY_ 0 0 0 REV__ENST00000482467.1_1_1:91486538-91487250:-|nuORF REV__ENST00000482467.1_1_1:91486538-91487250:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 637.33803 1272.66151 0.21814 0.00013903 -0.57773 -0.00036821 -0.35958 -0.00022918 637.3377001225695 66.419 0.16534 66.419 66.325 66.491 0 -0.066657 -0.00011982 NaN 19.257 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 454650 + 50790 27720 34340 35124 0.036081946630019957 QRYFRQKL 8 Unmodified _QRYFRQKL_ 0 0 0 ENSG00000168014|ENST00000334126|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 ENSG00000168014|ENST00000334126|C2CD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2202758789062 3 380.220847 1137.64071 -0.62333 -0.000237 -0.99034 -0.00037655 -1.6137 -0.00061355 380.22041427798865 15.321 0.079719 15.321 15.285 15.365 0 33 19 2 0 0 0 0.80676 1 7365 7365 1.6526 0.58116 1 550200 50791 7703 34341 35125 59067 59067 0.07739649074005683 QRYGRWYQQWP 11 Unmodified _QRYGRWYQQWP_ 0 0 0 REV__ENST00000374514.7_1_1:24121362-24121572:+|nuORF REV__ENST00000374514.7_1_1:24121362-24121572:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2591552734375 3 523.25662 1566.74803 NaN NaN NaN NaN NaN NaN NaN 13.804 1 13.804 13.304 14.304 0 0 0 0 0.94307 1 6533 6533 0.08335 0 1 + 50792 26181 34342 35126 59068 59068 -0.012674257824528468 QRYQHRWSPV 10 Unmodified _QRYQHRWSPV_ 0 0 0 ENST00000599581.5_1_19:52786637-52794448:+|nuORF ENST00000599581.5_1_19:52786637-52794448:+|nuORF ENST00000599581.5_1_19:52786637-52794448:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 452.9004211425781 3 452.902177 1355.6847 NaN NaN NaN NaN NaN NaN NaN 16.146 1 13.589 13.089 14.089 -2.557 0 0 0 0.98857 1 8344 8344 1.9064 0.57673 1 50793 15788 34343 35127 59069 59069 0.021086335003019485 QRYWYLRD 8 Unmodified _QRYWYLRD_ 0 0 0 REV__nc|ENSG00000211818|A0A0B4J263|TRAV39 REV__nc|ENSG00000211818|A0A0B4J263|TRAV39 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.045166015625 3 400.536724 1198.58834 -0.19837 -7.9453E-05 2.5486 0.0010208 2.3503 0.00094136 400.8720359215963 33.064 0.14167 33.094 32.998 33.14 0.029743 8 5 2 0 0 0 8.7369 1 17407 17407 0.35063 0.19131 1 728540 + 50794 29930 34344 35128 59070 59070 -0.0030093405964635167 QRYYDRYRNYE 11 Unmodified _QRYYDRYRNYE_ 0 0 0 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 REV__ENSG00000214753|ENST00000301785|HNRNPUL2 MSMS AL20221201_MKP_PDAC_01 4 813.3783569335938 2 813.376403 1624.73825 NaN NaN NaN NaN NaN NaN NaN 84.713 1 78.537 78.037 79.037 -6.1757 0 0 0 0.93933 1 55751 55751 2.9952 1.8019 1 + 50795 24322 34345 35129 59071 59071 -0.049126585784733834 QRYYKNKF 8 Unmodified _QRYYKNKF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8736267089844 3 382.873336 1145.59818 0.057096 2.1861E-05 1.2279 0.00047014 1.285 0.00049201 382.87371700937814 19.018 0.20979 19.024 18.935 19.145 0.0064507 15 10 2 0 0 0 0.81031 1 9683 9683 0.45834 0 1 383950 50796 1504 34346 35130 59072 59072 0.031202539457581224 QRYYRRKLISR 11 Unmodified _QRYYRRKLISR_ 0 0 0 REV__ENSG00000175826|ENST00000574322|CTDNEP1 REV__ENSG00000175826|ENST00000574322|CTDNEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 769.9544677734375 2 769.954958 1537.89536 NaN NaN NaN NaN NaN NaN NaN 86.711 1 86.711 86.211 87.211 0 0 0 0 0.9435 1 48024 48024 0 0 1 + 50797 22895 34347 35131 59073 59073 0.14793090822354316 QSACRAGRR 9 Unmodified _QSACRAGRR_ 0 0 0 REV__ENST00000264883.7_1_4:77069556-77069613:-|nuORF REV__ENST00000264883.7_1_4:77069556-77069613:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7637939453125 2 502.761966 1003.50938 -0.18664 -9.3835E-05 1.9579 0.00098435 1.7712 0.00089051 502.7629421779328 17.453 0.23503 17.453 17.38 17.615 0 61 35 2 0 0 0 0.1773 1 8636 8636 25.399 2.663 1 769080 + 50798 25081 34348 35132 59074 59074 0.007765154344383518 QSALHLPTVGQ 11 Unmodified _QSALHLPTVGQ_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2130126953125 3 384.212017 1149.61422 1.1375 0.00043705 2.1245 0.00081627 3.2621 0.0012533 384.2129371627314 22.265 0.28281 19.53 19.335 19.617 -2.7348 23 14 2 0 0 0 0.67937 1 11956 11956 5.1984 1.6058 1 1927800 + 50799 20769 34349 35133 59075 59075 0.04539915392001603 QSALVGPK 8 Unmodified _QSALVGPK_ 0 0 0 REV__nc|ENSG00000088888|Q7Z434-4|MAVS REV__nc|ENSG00000088888|Q7Z434-4|MAVS MSMS AL20221201_MKP_PDAC_01 4 400.2383422851562 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 107.17 1 101 100.5 101.5 -6.1757 0 0 0 0.97444 1 71702 71702 2.0598 0 1 + 50800 17817 34350 35134 59076 59076 0.052661306972822786 QSAMFNVQTNY 11 Unmodified _QSAMFNVQTNY_ 0 0 0 REV__ENSG00000076924|ENST00000358368|XAB2 REV__ENSG00000076924|ENST00000358368|XAB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2963256835938 2 651.792795 1301.57104 0.28916 0.00018847 2.5412 0.0016563 2.8303 0.0018448 651.7954281766742 46.474 0.52618 46.474 46.313 46.839 0 33 24 2 0 0 0 0.30286 1 25346 25346 4.897 1.3005 1 1649700 + 50801 17597 34351 35135 59077 59077 -0.06768642447582351 QSAVGETGP 9 Unmodified _QSAVGETGP_ 0 0 0 REV__ENST00000006053.6_2_16:57417041-57417284:+|nuORF REV__ENST00000006053.6_2_16:57417041-57417284:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.205078125 2 423.203607 844.392661 1.4166 0.00059952 0.76272 0.00032279 2.1794 0.00092231 423.2037500361349 20.69 0.42923 17.997 17.705 18.134 -2.693 40 26 2 0 0 0 0.25681 2 11077 10977;11077 19.257 4.4187 1 3657700 + 50802 24700 34352 35136 59078;59079 59079 -0.03575944304338918 QSDLILLII 9 Unmodified _QSDLILLII_ 0 0 0 REV__ENST00000557937.5_1_15:60654925-60655006:-|nuORF REV__ENST00000557937.5_1_15:60654925-60655006:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3240966796875 2 514.323525 1026.6325 1.489 0.00076583 0.4245 0.00021833 1.9135 0.00098416 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.59218 1 72537 72537 1.8442 0 1 4939700 + 50803 28796 34353 35137 59080 59080 0.12024657314009346 QSDLRFMFP 9 Unmodified _QSDLRFMFP_ 0 0 0 REV__ENSG00000121053|ENST00000225371|EPX REV__ENSG00000121053|ENST00000225371|EPX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.779296875 2 570.778959 1139.54336 -0.20563 -0.00011737 1.9155 0.0010933 1.7099 0.00097598 570.7798162724331 25.894 0.4079 25.894 25.737 26.145 0 37 19 3 0 0 0 0.46501 1 13255 13255 9.3831 0 1 5428700 + 50804 19273 34354 35138 59081 59081 -0.02082500917163088 QSEDGSHTLQR 11 Unmodified _QSEDGSHTLQR_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.8619384765625 3 419.865457 1256.57454 -0.64991 -0.00027288 -2.4692 -0.0010367 -3.1191 -0.0013096 419.8627272251855 34.55 0.29143 34.55 34.442 34.733 0 23 14 2 0 0 0 0.48615 1 18214 18214 9.7643 7.133 1 2778400 50805 10298 34355 35139 59082 59082 -0.043482563493626 QSEKSKEV 8 Unmodified _QSEKSKEV_ 0 0 0 REV__nc|ENSG00000164114|Q49MG5-2|MAP9 REV__nc|ENSG00000164114|Q49MG5-2|MAP9 MSMS AL20221201_MKP_PDAC_01 4 467.7454528808594 2 467.745639 933.476725 NaN NaN NaN NaN NaN NaN NaN 51.989 1 46.255 45.755 46.755 -5.7345 0 0 0 0.62748 1 32777 32777 32.305 6.9062 1 + 50806 21872 34356 35140 59083 59083 0.007325867925828788 QSELHVYL 8 Unmodified _QSELHVYL_ 0 0 0 REV__ENST00000264993.7_2_3:133308073-133308205:+|nuORF REV__ENST00000264993.7_2_3:133308073-133308205:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2663879394531 2 494.758549 987.502546 0.66192 0.00032749 3.526 0.0017445 4.1879 0.002072 494.75847853943793 36.634 0.44605 36.634 36.35 36.796 0 56 21 4 0 0 0 0.55032 1 19381 19381 30.225 3.3412 1 17229000 + 50807 25084 34357 35141 59084 59084 0.00829481034861601 QSFDEITAM 9 Oxidation (M) _QSFDEITAM(Oxidation (M))_ QSFDEITAM(1) QSFDEITAM(82) 0 0 1 nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000174437|P16615-5|ATP2A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2285766601562 2 529.228965 1056.44338 -0.17815 -9.4282E-05 -0.66114 -0.0003499 -0.83929 -0.00044418 529.2288148137059 41.396 0.3203 41.396 41.218 41.538 0 43 15 4 0 0 0 0.009483 1 22277 22277 81.89 56.491 1 38029000 50808 8419 34358 35142 59085 59085 1432 -0.08258783041651441 QSFDEITAM 9 Unmodified _QSFDEITAM_ 0 0 0 nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2 nc|ENSG00000174437|P16615-5|ATP2A2 nc|ENSG00000174437|P16615-5|ATP2A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2330322265625 2 521.231507 1040.44846 0.92908 0.00048426 1.0375 0.0005408 1.9666 0.0010251 521.2321267580292 66.122 0.43786 59.947 59.74 60.177 -6.1757 41 24 2 0 0 0 0.2143 1 42974 42974 21.747 5.8995 1 23395000 50809 8419 34358 35143 59086 59086 -0.0701447917904261 QSFDLETL 8 Unmodified _QSFDLETL_ 0 0 0 REV__ENSG00000175928|ENST00000319331|LRRN1 REV__ENSG00000175928|ENST00000319331|LRRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7344665527344 2 476.73474 951.454927 0.50696 0.00024169 -0.32158 -0.00015331 0.18538 8.8379E-05 476.73400280407543 53.292 0.23892 53.292 53.141 53.38 0 20 9 3 0 0 0 0.66338 1 29524 29524 20.454 4.6064 1 4681300 + 50810 22899 34359 35144 59087 59087 -0.02274217955982749 QSFMAQLF 8 Unmodified _QSFMAQLF_ 0 0 0 nc|ENSG00000254769|Q8NGN8|OR4A4P nc|ENSG00000254769|Q8NGN8|OR4A4P nc|ENSG00000254769|Q8NGN8|OR4A4P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2353515625 2 486.236396 970.458238 NaN NaN NaN NaN NaN NaN NaN 17.717 1 17.717 17.217 18.217 0 0 0 0 0.97444 1 8753 8753 2.5775 0 1 50811 16585 34360 35145 59088 59088 -0.028172463829946537 QSFNNFMLR 9 Unmodified _QSFNNFMLR_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.78173828125 2 578.782033 1155.54951 0.78281 0.00045308 -0.83728 -0.0004846 -0.054469 -3.1526E-05 578.7815944487601 75.105 0.34657 74.628 74.474 74.821 -0.47714 41 15 3 0 0 0 0.52844 1 41119 41119 5.7319 0.50118 1 10284000 50812 5005 34361 35146 59089 59089 -0.022039826856598665 QSFNNFMLR 9 Unmodified _QSFNNFMLR_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7831420898438 2 578.782033 1155.54951 0.60079 0.00034773 0.62549 0.00036202 1.2263 0.00070975 578.7824044430814 74.553 0.36221 74.599 74.411 74.773 0.045959 37 15 3 0 0 0 0.52844 1 41079 41079 5.7319 0.97584 1 6730200 50813 5005 34361 35146 59090 59090 -0.022039826856598665 QSFPRPVHF 9 Unmodified _QSFPRPVHF_ 0 0 0 REV__ENST00000249923.7_1_11:14479099-14479171:-|nuORF REV__ENST00000249923.7_1_11:14479099-14479171:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2946166992188 2 557.793258 1113.57196 0.59555 0.0003322 -0.6979 -0.00038928 -0.10235 -5.7087E-05 557.7928005068263 74.062 0.39537 74.106 73.924 74.319 0.043983 58 17 4 0 0 0 0.2143 1 40765 40765 21.747 2.4897 1 24739000 + 50814 24876 34362 35147 59091 59091 0.019719847742635466 QSFTRMDEL 9 Unmodified _QSFTRMDEL_ 0 0 0 REV__ENSG00000137478|ENST00000409418|FCHSD2 REV__ENSG00000137478|ENST00000409418|FCHSD2 MSMS AL20221201_MKP_PDAC_01 4 376.1784973144531 3 376.178096 1125.51246 NaN NaN NaN NaN NaN NaN NaN 23.216 1 20.437 19.937 20.937 -2.7784 0 0 0 0.82396 1 12551 12551 2.7352 0 1 + 50815 20242 34363 35148 59092 59092 -0.04527699022082743 QSFTWSEE 8 Unmodified _QSFTWSEE_ 0 0 0 REV__nc|ENSG00000114439|Q8WY36-2|BBX REV__nc|ENSG00000114439|Q8WY36-2|BBX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.212158203125 2 507.214172 1012.41379 NaN NaN NaN NaN NaN NaN NaN 15.492 1 15.498 14.998 15.998 0.0057774 0 0 0 0.97444 1 7723 7723 2.3027 0.24298 1 + 50816 18913 34364 35149 59093 59093 -0.09191978995465888 QSFVHADYAVM 11 Unmodified _QSFVHADYAVM_ 0 0 0 REV__nc|ENSG00000152061|Q5R372-9|RABGAP1L REV__nc|ENSG00000152061|Q5R372-9|RABGAP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.29150390625 2 634.29243 1266.57031 0.32386 0.00020542 0.011685 7.4118E-06 0.33554 0.00021283 634.2927331695128 62.067 0.7066 55.891 55.576 56.283 -6.1757 91 39 3 0 0 0 0.26767 1 39981 39981 28.495 4.4739 1 36087000 + 50817 29708 34365 35150 59094 59094 -0.052314370966769275 QSGARPTGR 9 Unmodified _QSGARPTGR_ 0 0 0 REV__ENST00000393640.8_1_16:70432690-70432861:-|nuORF REV__ENST00000393640.8_1_16:70432690-70432861:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.3183898925781 2 465.249215 928.483876 NaN NaN NaN NaN NaN NaN NaN 104.01 1 103.96 103.46 104.46 -0.048737 0 0 0 0.85029 1 57751 57751 1.4819 0.68827 1 + 50818 26423 34366 35151 59095 59095 0.016773641836607567 QSHLELINTSI 11 Unmodified _QSHLELINTSI_ 0 0 0 ZNF37A|p.R86I|1|0.17|ENSG00000075407|chr10:38117408-38117408|G/T|missense_variant ZNF37A|p.R86I|1|0.17|ENSG00000075407|chr10:38117408-38117408|G/T|missense_variant ZNF37A|p.R86I|1|0.17|ENSG00000075407|chr10:38117408-38117408|G/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8384399414062 2 627.838059 1253.66157 NaN NaN NaN NaN NaN NaN NaN 102.94 1 102.84 102.34 103.34 -0.10458 0 0 0 0.94216 1 56156 56156 0.96228 0 1 50819 30212 34367 35152 59096 59096 0.044881498723498225 QSHLIQGKF 9 Unmodified _QSHLIQGKF_ 0 0 0 REV__ENST00000462992.1_1_1:171292253-171302174:+|nuORF REV__ENST00000462992.1_1_1:171292253-171302174:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1981506347656 3 353.197819 1056.57163 NaN NaN NaN NaN NaN NaN NaN 71.449 1 71.449 70.949 71.949 0 0 0 0 0.85447 1 39797 39797 0.96228 0 1 + 50820 17586 34368 35153 59097 59097 0.04560565054430299 QSHYIMLC 8 Unmodified _QSHYIMLC_ 0 0 0 REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF REV__ENST00000487698.5_2_2:198285187-198288554:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7271423339844 2 497.72788 993.441208 NaN NaN NaN NaN NaN NaN NaN 11.803 1 11.816 11.316 12.316 0.012355 0 0 0 0.97444 1 5826 5826 0.79363 0.10326 1 + 50821 27833 34369 35154 59098 59098 -0.05577490260441209 QSIESGSIEY 10 Unmodified _QSIESGSIEY_ 0 0 0 ENSG00000269058|ENST00000269881|CALR3 ENSG00000269058|ENST00000269881|CALR3 ENSG00000269058|ENST00000269881|CALR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7589111328125 2 556.758943 1111.50333 NaN NaN NaN NaN NaN NaN NaN 44.693 1 44.693 44.193 45.193 0 0 0 0 0.49971 1 24330 24330 26.268 3.5319 1 50822 10874 34370 35155 59099 59099 -0.047957691067495034 QSIYPLHDVF 10 Unmodified _QSIYPLHDVF_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000488297.2_1_5:87678278-87678506:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8109130859375 2 609.811313 1217.60807 0.62091 0.00037864 1.3312 0.00081178 1.9521 0.0011904 609.8120900812215 67.729 0.31602 67.247 67.075 67.391 -0.48218 37 13 4 0 0 0 0.07026 1 36968 36968 62.573 20.733 1 4206700 50823 5696 34371 35156 59100 59100 0.007973971604315011 QSKHIVVILD 10 Unmodified _QSKHIVVILD_ 0 0 0 ENSG00000158966|ENST00000651257|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.843505859375 2 576.342781 1150.67101 1.6184 0.00093277 -1.7093 -0.00098516 -0.090909 -5.2395E-05 576.3415372504089 105.07 0.1375 98.892 98.803 98.941 -6.1757 27 15 3 0 0 0 0.71413 1 70332 70332 1.3295 0.13619 1 77761000 50824 6619 34372 35157 59101 59101 0.10169962948521061 QSKIFLFDKC 10 Unmodified _QSKIFLFDKC_ 0 0 0 nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43 nc|ENSG00000198521|P17038-2|ZNF43 nc|ENSG00000198521|P17038-2|ZNF43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8248901367188 2 614.823366 1227.63218 1.3032 0.00080124 0.1099 6.7566E-05 1.4131 0.0008688 614.8226221649295 66.299 0.27208 66.308 66.166 66.438 0.0095596 33 13 3 0 0 0 0.1899 1 36357 36357 34.932 0.53034 1 12434000 50825 10101 34373 35158 59102 59102 0.027469143225061998 QSKQLRLA 8 Unmodified _QSKQLRLA_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.28759765625 2 472.287808 942.561064 2.1464 0.0010137 -0.55326 -0.0002613 1.5931 0.00075242 472.2873773712944 95.97 0.43723 95.974 95.737 96.174 0.004158 29 15 3 0 0 0 0.80992 1 53274 53274 0.69038 0 1 3241100 + 50826 17984 34374 35159 59103 59103 0.08748582399971383 QSKTCRLFIAF 11 Unmodified _QSKTCRLFIAF_ 0 0 0 REV__ENSG00000203734|ENST00000541398|ECT2L REV__ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.3544311523438 2 657.355365 1312.69618 -0.02818 -1.8524E-05 -2.9894 -0.0019651 -3.0176 -0.0019836 657.3530590631293 79.716 0.25215 79.716 79.566 79.819 0 22 10 3 0 0 0 0.69316 1 44259 44259 4.897 0.95262 1 504610 + 50827 24119 34375 35160 59104 59104 0.05233694479443329 QSLHFFWFL 9 Unmodified _QSLHFFWFL_ 0 0 0 ENST00000439326.7_1_19:12187946-12187997:+|nuORF ENST00000439326.7_1_19:12187946-12187997:+|nuORF ENST00000439326.7_1_19:12187946-12187997:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.8113403320312 2 612.813659 1223.61277 NaN NaN NaN NaN NaN NaN NaN 73.747 1 73.747 73.247 74.247 0 0 0 0 0.85737 1 41054 41054 0.6015 0 1 50828 13375 34376 35161 59105 59105 0.009903260938926906 QSLIYIAEK 9 Unmodified _QSLIYIAEK_ 0 0 0 REV__nc|ENSG00000188162|Q6ZRI0|OTOG REV__nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8040161132812 2 532.802957 1063.59136 1.0633 0.00056655 -0.5307 -0.00028276 0.53265 0.0002838 532.8026942726009 87.047 0.55785 80.871 80.588 81.146 -6.1757 76 30 3 0 0 0 0.028475 1 57375 57375 56.177 1.4035 1 50671000 + 50829 23694 34377 35162 59106 59106 0.06210896274501465 QSLPEPVA 8 Unmodified _QSLPEPVA_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.7270812988281 2 420.726718 839.438883 0.55749 0.00023455 -0.27549 -0.00011591 0.28199 0.00011864 420.726632358395 54.092 0.32532 54.092 53.945 54.271 0 25 14 2 0 0 0 0.60622 1 30113 30113 25.399 2.2509 1 4441600 50830 8226 34378 35163 59107 59107 0.012741205977590653 QSLPKFLKKEL 11 Unmodified _QSLPKFLKKEL_ 0 0 0 REV__ENSG00000250821|ENST00000636125|EXOC1L REV__ENSG00000250821|ENST00000636125|EXOC1L MSMS AL20221201_MKP_PDAC_01 4 665.9068603515625 2 665.908288 1329.80202 NaN NaN NaN NaN NaN NaN NaN 106.09 1 99.918 99.418 100.42 -6.1757 0 0 0 0.94184 1 71037 71037 1.1933 0.79263 1 + 50831 24502 34379 35164 59108 59108 0.15031353596555164 QSLPLETFS 9 Unmodified _QSLPLETFS_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2632446289062 2 511.263665 1020.51278 -0.11279 -5.7664E-05 -0.22123 -0.00011311 -0.33402 -0.00017077 511.2634933581978 54.725 0.4149 54.258 54.025 54.44 -0.46664 58 20 4 0 0 0 0.18144 1 29606 29606 24.991 3.2443 1 66455000 50832 8472 34380 35165 59109 59109 0.003340439694397901 QSLPLETFS 9 Unmodified _QSLPLETFS_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2627258300781 2 511.263665 1020.51278 0.39462 0.00020175 -3.8678 -0.0019774 -3.4731 -0.0017757 511.2615504379683 54.408 0.2819 54.341 54.202 54.484 -0.066936 22 13 2 0 0 0 0.18144 1 29521 29521 24.991 0.97039 1 10518000 50833 8472 34380 35165 59110 59110 0.003340439694397901 QSLPLETFS 9 Unmodified _QSLPLETFS_ 0 0 0 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 ENSG00000174948|ENST00000389740|GPR149 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2640075683594 2 511.263665 1020.51278 0.72421 0.00037026 0.1316 6.7282E-05 0.85581 0.00043754 511.2636470980192 62.295 0.74118 56.119 55.803 56.544 -6.1757 136 40 5 0 0 0 0.085319 2 40272 40145;40272 36.506 11.107 1 1349600000 50834 8472 34380 35165 59111;59112 59112 0.003340439694397901 QSLTSYWSL 9 Unmodified _QSLTSYWSL_ 0 0 0 ENST00000471841.5_1_3:179066694-179069717:+|nuORF ENST00000471841.5_1_3:179066694-179069717:+|nuORF ENST00000471841.5_1_3:179066694-179069717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7698974609375 2 542.769114 1083.52368 0.24888 0.00013508 -0.15142 -8.2187E-05 0.097455 5.2896E-05 542.7688662814478 53.786 0.27576 53.333 53.183 53.459 -0.45354 37 13 3 0 0 0 0.51218 1 29189 29189 6.7232 0 1 14983000 50835 13887 34381 35166 59113 59113 -0.014745536562941197 QSMASLLHLV 10 Unmodified _QSMASLLHLV_ 0 0 0 REV__ENSG00000103544|ENST00000417362|VPS35L REV__ENSG00000103544|ENST00000417362|VPS35L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.869140625 3 366.870715 1097.59032 -0.45715 -0.00016771 -2.7683 -0.0010156 -3.2254 -0.0011833 366.86963431824694 25.538 0.18675 25.538 25.427 25.613 0 15 8 2 0 0 0 0.71276 1 13080 13080 0.62683 0 1 988750 + 50836 18314 34382 35167 59114 59114 0.045423586339666144 QSMRCLPAF 9 Carbamidomethyl (C) _QSMRC(Carbamidomethyl (C))LPAF_ QSMRC(1)LPAF QSMRC(86)LPAF 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2650756835938 2 555.265161 1108.51577 0.75107 0.00041704 0.20761 0.00011528 0.95868 0.00053232 555.2656250527674 57.004 0.32491 51.027 50.79 51.115 -5.9769 26 19 2 0 0 0 0.0089732 1 36413 36413 86.332 52.229 1 30040000 50837 8367 34383 35168 59115 59115 811 -0.03414727449080601 QSNKKKKKKKK 11 Unmodified _QSNKKKKKKKK_ 0 0 0 REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF REV__ENST00000359660.9_1_5:107195069-107195318:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.3088684082031 3 458.308544 1371.9038 NaN NaN NaN NaN NaN NaN NaN 19.22 1 19.228 18.728 19.728 0.0078487 0 0 0 0.9434 1 9770 9770 0.073264 0 1 + 50838 25896 34384 35169 59116 59116 0.23272644738972303 QSNLEPLFEG 10 Unmodified _QSNLEPLFEG_ 0 0 0 ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533 ENSG00000170442|ENST00000423955|KRT86 ENSG00000170442|ENST00000423955|KRT86 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5198974609375 3 378.520628 1132.54005 NaN NaN NaN NaN NaN NaN NaN 17.18 1 17.18 16.68 17.68 0 0 0 0 0.99897 1 8443 8443 0.77653 0 1 + 50839 151 34385 35170 59117 59117 -0.020914724902013404 QSPGSRIDSMS 11 Unmodified _QSPGSRIDSMS_ 0 0 0 REV__ENSG00000132518|ENST00000254854|GUCY2D REV__ENSG00000132518|ENST00000254854|GUCY2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7705688476562 2 582.769319 1163.52409 0.61063 0.00035586 0.64479 0.00037576 1.2554 0.00073162 582.7695463658931 53.279 1.0731 47.475 47.199 48.272 -5.8042 199 66 5 0 0 0 0.5551 1 34017 34017 13.615 1.3742 1 1761099999.9999998 + 50840 19859 34386 35171 59118 59118 -0.05113501998744141 QSPLIRQSPRC 11 Unmodified _QSPLIRQSPRC_ 0 0 0 REV__ENST00000409299.7_1_20:32295381-32295504:-|nuORF REV__ENST00000409299.7_1_20:32295381-32295504:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.3466796875 2 642.845696 1283.67684 -0.029202 -1.8772E-05 -0.71829 -0.00046175 -0.74749 -0.00048052 642.8452461275474 92.425 0.3893 92.425 92.233 92.622 0 97 30 4 0 0 0 0.69316 1 51042 51042 4.897 1.3005 1 10658000 + 50841 26685 34387 35172 59119 59119 0.04634738188542542 QSPQQIVHPF 10 Unmodified _QSPQQIVHPF_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;nc|ENSG00000060749|Q2KHR3-2|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2081604003906 3 394.208495 1179.60366 -0.53487 -0.00021085 0.29203 0.00011512 -0.24285 -9.5732E-05 394.20853693668005 18.212 0.28024 18.226 18.131 18.412 0.013865 127 52 3 0 0 0 0.69377 1 9080 9080 1.7423 0.41263 1 4290700 50842 832 34388 35173 59120 59120 0.021039327375319772 QSPTQRPRG 9 Unmodified _QSPTQRPRG_ 0 0 0 ENST00000373615.8_2_9:126774056-126774209:+|nuORF ENST00000373615.8_2_9:126774056-126774209:+|nuORF ENST00000373615.8_2_9:126774056-126774209:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.775634765625 2 513.775597 1025.53664 0.26475 0.00013602 0.28667 0.00014729 0.55142 0.00028331 513.7757337679453 26.402 0.25949 23.451 23.319 23.579 -2.9511 22 13 2 0 0 0 0.30202 1 14543 14543 17.113 17.113 1 7451300 50843 12418 34389 35174 59121 59121 0.02489322246469783 QSPVSCPS 8 Unmodified _QSPVSCPS_ 0 0 0 REV__ENSG00000004777|ENST00000007510|ARHGAP33 REV__ENSG00000004777|ENST00000007510|ARHGAP33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 804.3565063476562 1 804.35563 803.348354 1.3224 0.0010637 0.74831 0.00060191 2.0707 0.0016656 804.3559335367288 87.355 0.47559 81.18 80.93 81.405 -6.1757 44 25 2 0 0 0 0.79669 1 57610 57610 8.5933 0 1 21079000 + 50844 16949 34390 35175 59122 59122 -0.061186717221630715 QSRLTFYAL 9 Unmodified _QSRLTFYAL_ 0 0 0 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 CON__ENSEMBL:ENSBTAP00000032840 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5519104003906 3 366.869591 1097.58694 NaN NaN NaN NaN NaN NaN NaN 14.953 1 14.953 14.453 15.453 0 0 0 0 0.81228 1 7159 7159 5.7319 1.5423 1 + 50845 148 34391 35176 59123 59123 0.04205431851596586 QSRMGPYM 8 Unmodified _QSRMGPYM_ 0 0 0 REV__nc|ENSG00000228970|P0CB48|UBTFL6 REV__nc|ENSG00000228970|P0CB48|UBTFL6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2176208496094 2 485.21768 968.420807 NaN NaN NaN NaN NaN NaN NaN 19.705 1 19.733 19.233 20.233 0.028357 0 0 0 0.97444 1 9951 9951 0.79363 0 1 + 50846 29955 34392 35177 59124 59124 -0.06466660920250433 QSRNCCTKSDT 11 Unmodified _QSRNCCTKSDT_ 0 0 0 ENST00000220592.9_2_8:141540658-141540805:-|nuORF ENST00000220592.9_2_8:141540658-141540805:-|nuORF ENST00000220592.9_2_8:141540658-141540805:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 415.1755065917969 3 414.8449 1241.51287 NaN NaN NaN NaN NaN NaN NaN 36.506 1 32.257 31.757 32.757 -4.2489 0 0 0 0.85265 1 21326 21326 5.1984 0.15092 1 50847 11029 34393 35178 59125 59125 -0.09822647364535442 QSRQLILRL 9 Unmodified _QSRQLILRL_ 0 0 0 REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.359130859375 2 563.85639 1125.69823 1.7522 0.000988 -1.0049 -0.00056664 0.74729 0.00042137 564.3574665843546 105.18 0.23477 99.005 98.867 99.102 -6.1757 60 48 2 0 0 0 0.59218 1 70398 70398 1.8442 0 1 167720000 + 50848 18681 34394 35179 59126 59126 0.14040491279547496 QSRQLILRL 9 Unmodified _QSRQLILRL_ 0 0 0 REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.3250122070312 2 563.85639 1125.69823 1.7522 0.000988 -1.0049 -0.00056664 0.74729 0.00042137 564.3574665843546 105.18 0.23477 99.005 98.867 99.102 -6.1757 60 48 2 0 0 0 0.21834 1 70401 70401 0.45834 0.10771 1 167720000 + 50849 18681 34394 35179 59127 59127 0.14040491279547496 QSSDHGQT 8 Unmodified _QSSDHGQT_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.1798400878906 2 430.180663 858.346774 0.79722 0.00034295 -0.76756 -0.00033019 0.029659 1.2759E-05 430.17998837400216 54.329 0.35313 54.329 54.152 54.505 0 38 15 3 0 0 0 0.80383 1 30135 30135 4.3292 1.44 1 6000900 50850 2889 34395 35180 59128 59128 -0.08806589486562189 QSSDHGQT 8 Unmodified _QSSDHGQT_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 430.180663 858.346774 0.11608 4.9935E-05 -0.42922 -0.00018464 -0.31314 -0.00013471 430.1804984004977 54.849 0.24104 54.383 54.261 54.502 -0.46664 0.026854 0.00024254 NaN 4.3292 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1483200 50851 2889 34395 35180 -0.08806589486562189 QSSLGFHIF 9 Unmodified _QSSLGFHIF_ 0 0 0 REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2666625976562 2 518.266542 1034.51853 0.35659 0.00018481 1.0602 0.00054947 1.4168 0.00073428 518.267041817356 48.597 0.29434 48.553 48.359 48.654 -0.043694 36 14 3 0 0 0 0.32871 1 26192 26192 15.847 1.0089 1 4913700 + 50852 27757 34396 35181 59129 59129 0.0026518727172515355 QSSPSKENLLE 11 Unmodified _QSSPSKENLLE_ 0 0 0 REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR REV__nc|ENSG00000155792|Q8TB45-2|DEPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.8135375976562 2 616.311874 1230.6092 -0.34129 -0.00021034 -0.68354 -0.00042127 -1.0248 -0.00063161 616.3114185237357 27.392 0.31962 27.392 27.232 27.552 0 47 15 4 0 0 0 0.5551 1 14070 14070 13.615 0 1 22704000 + 50853 21288 34397 35182 59130 59130 0.00311566738696456 QSSSCTDNFV 10 Unmodified _QSSSCTDNFV_ 0 0 0 ENSG00000205089|ENST00000378731|CCNI2;nc|ENSG00000205089|Q6ZMN8-3|CCNI2;nc|ENSG00000205089|Q6ZMN8-2|CCNI2 ENSG00000205089|ENST00000378731|CCNI2 ENSG00000205089|ENST00000378731|CCNI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2213745117188 2 544.221671 1086.42879 0.65829 0.00035826 0.78031 0.00042466 1.4386 0.00078292 544.2221499490674 50.991 0.51024 50.991 50.744 51.254 0 49 28 2 0 0 0 0.42143 2 28241 28131;28241 20.415 4.8722 1 3486200 50854 10346 34398 35183 59131;59132 59132 -0.11096855189794042 QSTAKLAA 8 Unmodified _QSTAKLAA_ 0 0 0 REV__nc|ENSG00000107242|O14986-3|PIP5K1B REV__nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2259826660156 2 395.226885 788.439217 -0.013693 -5.4118E-06 -1.4894 -0.00058864 -1.5031 -0.00059406 395.22619132149117 72.912 0.46625 72.954 72.7 73.166 0.041725 51 22 3 0 0 0 0.80975 2 40086 40086;40192 0.79363 0 1 22596000 + 50855 18555 34399 35184 59133;59134 59133 0.036535403176003456 QSTIQRCISCK 11 Unmodified _QSTIQRCISCK_ 0 0 0 nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7454223632812 2 633.818289 1265.62203 -0.71214 -0.00045137 0.18584 0.00011779 -0.52629 -0.00033357 633.8182189131215 36.749 0.12612 36.5 36.405 36.531 -0.2497 7 5 2 0 0 0 0.30217 1 19268 19268 5.2969 0.96765 1 2032400 50856 5976 34400 35185 59135 59135 -0.00016016674385355145 QSTLSTKI 8 Unmodified _QSTLSTKI_ 0 0 0 REV__nc|ENSG00000002079|Q9H6N6|MYH16 REV__nc|ENSG00000002079|Q9H6N6|MYH16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2532653808594 2 439.2531 876.491647 0.56985 0.00025031 -1.3 -0.00057103 -0.73015 -0.00032072 439.25247852058476 79.164 0.4799 79.219 78.988 79.468 0.05497 44 18 3 0 0 0 0.80975 2 43684 43684;43797 0.79363 0 1 20486000 + 50857 29478 34401 35186 59136;59137 59136 0.04846078660557396 QSTLSYILI 9 Unmodified _QSTLSYILI_ 0 0 0 nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;nc|ENSG00000162687|Q6UVM3-3|KCNT2;ENST00000451324.6_1_1:196197356-196228734:-|nuORF;ENST00000498426.5_1_1:196197356-196286329:-|nuORF nc|ENSG00000162687|Q6UVM3-2|KCNT2 nc|ENSG00000162687|Q6UVM3-2|KCNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2978515625 2 519.297507 1036.58046 0.78919 0.00040982 -0.018863 -9.7956E-06 0.77032 0.00040003 519.2974749894054 70.487 0.44936 70.522 70.336 70.785 0.035507 35 20 2 0 0 0 0.14 1 38774 38774 29.082 2.1979 1 4306500 50858 6892 34402 35187 59138 59138 0.06363493900221329 QSTNFQELVF 10 Unmodified _QSTNFQELVF_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA REV__ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8688049316406 3 404.868027 1211.58225 1.0677 0.00043228 -0.29838 -0.0001208 0.76933 0.00031148 404.8680919133806 46.834 0.24385 46.801 46.675 46.919 -0.033417 38 11 5 0 0 0 0.5802 1 25194 25194 12.175 4.0192 1 13209000 + 50859 24456 34403 35188 59139 59139 -0.015074970818204747 QSTRTERLGP 10 Unmodified _QSTRTERLGP_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.808837890625 2 572.807094 1143.59963 -0.074076 -4.2431E-05 1.8697 0.001071 1.7956 0.0010285 572.8086910298808 35.448 0.25121 35.473 35.351 35.602 0.024967 18 11 2 0 0 0 0.52097 1 18752 18752 15.248 3.7538 1 1811600 + 50860 23192 34404 35189 59140 59140 0.03357843243838943 QSTRTERLGP 10 Unmodified _QSTRTERLGP_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 572.807094 1143.59963 -0.074076 -4.2431E-05 1.8697 0.001071 1.7956 0.0010285 572.8086910298808 35.448 0.25121 35.473 35.351 35.602 0.024967 0 0 NaN 15.248 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1811600 + 50861 23192 34404 35189 0.03357843243838943 QSVAWAIRAWM 11 Unmodified _QSVAWAIRAWM_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.8413696289062 2 659.839882 1317.66521 0.67144 0.00044304 1.4672 0.0009681 2.1386 0.0014111 659.8408191355975 29.668 0.18328 29.588 29.46 29.643 -0.080429 15 7 3 0 0 0 0.42108 1 15356 15356 20.415 4.2654 1 10201000 + 50862 21226 34405 35190 59141 59141 0.019085411651758477 QSVAWAIRAWM 11 Unmodified _QSVAWAIRAWM_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.8423461914062 2 659.839882 1317.66521 0.77684 0.00051259 1.9355 0.0012771 2.7123 0.0017897 659.8409519435462 34.219 0.29546 30.233 30.045 30.34 -3.9853 36 16 3 0 0 0 0.46131 1 19736 19736 18.373 2.224 1 13959000 + 50863 21226 34405 35190 59142 59142 0.019085411651758477 QSVAWAIRAWM 11 Unmodified _QSVAWAIRAWM_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 659.839882 1317.66521 -0.57772 -0.0003812 2.1169 0.0013968 1.5392 0.0010156 659.8413027252401 29.666 0.17458 29.666 29.567 29.742 0 0.039256 0.00029493 NaN 20.415 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5141800 + 50864 21226 34405 35190 0.019085411651758477 QSVAWAIRAWM 11 Unmodified _QSVAWAIRAWM_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 659.839882 1317.66521 0.67144 0.00044304 1.4672 0.0009681 2.1386 0.0014111 659.8408191355975 29.668 0.18328 29.588 29.46 29.643 -0.080429 -0.039256 -0.00056254 NaN 20.415 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 10201000 + 50865 21226 34405 35190 0.019085411651758477 QSVEVIESF 9 Unmodified _QSVEVIESF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2611694335938 2 519.261122 1036.50769 0.24897 0.00012928 -1.1394 -0.00059163 -0.89041 -0.00046236 519.2607905864579 61.964 0.25697 61.964 61.842 62.099 0 25 10 3 0 0 0 0.062454 1 34566 34566 41.956 5.8285 1 3944200 50866 1378 34406 35191 59143 59143 -0.00910259893203147 QSVNQGFEAVY 11 Unmodified _QSVNQGFEAVY_ 0 0 0 nc|ENSG00000166949|P84022-4|SMAD3;nc|ENSG00000166949|P84022-3|SMAD3;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2 nc|ENSG00000166949|P84022-4|SMAD3 nc|ENSG00000166949|P84022-4|SMAD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2933349609375 2 621.293485 1240.57242 0.57765 0.00035889 0.2727 0.00016943 0.85035 0.00052832 621.2936734156406 51.55 0.1713 51.55 51.431 51.603 0 10 7 2 0 0 0 0.028917 1 28488 28488 67.838 55.598 1 2307000 50867 7555 34407 35192 59144 59144 -0.03824685087192847 QSVRRPRPM 9 Unmodified _QSVRRPRPM_ 0 0 0 REV__ENST00000509386.2_1_12:31872283-31882011:-|nuORF REV__ENST00000509386.2_1_12:31872283-31882011:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2134399414062 3 376.213586 1125.61893 0.045821 1.7239E-05 -0.065056 -2.4475E-05 -0.019234 -7.2363E-06 376.21337022723594 54.32 0.56253 54.253 53.941 54.504 -0.066936 83 27 4 0 0 0 0.59218 1 29553 29553 0.96228 0 1 26969000 + 50868 21088 34408 35193 59145 59145 0.061145210537461026 QSWIERGR 8 Unmodified _QSWIERGR_ 0 0 0 ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-3|RANBP3L ENSG00000164188|ENST00000296604|RANBP3L ENSG00000164188|ENST00000296604|RANBP3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2749633789062 2 516.27269 1030.53083 0.73577 0.00037986 3.375 0.0017424 4.1108 0.0021223 516.2746394241702 93.613 0.36864 87.437 87.334 87.703 -6.1757 26 21 2 0 0 0 0.6895 1 62047 62047 18.135 1.0221 1 9936300 50869 7160 34409 35194 59146 59146 0.016782237348024864 QSWRAVSR 8 Unmodified _QSWRAVSR_ 0 0 0 ENSG00000131263|ENST00000332687|RLIM;ENSG00000165553|ENST00000298352|NGB;ENST00000558657.1_1_15:50086592-50087141:+|nuORF ENSG00000131263|ENST00000332687|RLIM ENSG00000131263|ENST00000332687|RLIM MSMS AL20221201_MKP_PDAC_01 4 495.2669677734375 2 495.267407 988.520262 NaN NaN NaN NaN NaN NaN NaN 31.612 1 27.916 27.416 28.416 -3.6958 0 0 0 0.83301 1 17917 17917 21.747 0.20967 1 50870 4313 34410 35195 59147 59147 0.025542410803723214 QSYCPGAFADL 11 Unmodified _QSYCPGAFADL_ 0 0 0 REV__ENST00000477979.5_1_10:102821786-102824056:+|nuORF REV__ENST00000477979.5_1_10:102821786-102824056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.25830078125 2 586.258056 1170.50156 0.023615 1.3845E-05 1.9609 0.0011496 1.9845 0.0011635 586.259418510536 64.951 0.11207 64.951 64.901 65.013 0 7 5 2 0 0 0 0.69316 1 36248 36248 4.897 0.56777 1 597090 + 50871 27475 34411 35196 59148 59148 -0.07687101396345497 QSYGVYYIKE 10 Unmodified _QSYGVYYIKE_ 0 0 0 REV__nc|ENSG00000173239|Q5VYY2-2|LIPM REV__nc|ENSG00000173239|Q5VYY2-2|LIPM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2392272949219 3 417.208161 1248.60265 0.075777 3.1615E-05 4.0386 0.0016849 4.1144 0.0017166 417.2101478844613 76.071 0.21482 76.119 75.968 76.182 0.047943 12 8 2 0 0 0 0.23745 1 41935 41935 3.0723 0.9883 1 2784400 + 50872 22714 34412 35197 59149 59149 -0.0117032642203867 QSYYAKLLGEL 11 Unmodified _QSYYAKLLGEL_ 0 0 0 ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.8452758789062 2 642.845353 1283.67615 -0.030623 -1.9686E-05 0.15669 0.00010072 0.12606 8.1038E-05 642.8455323316432 84.94 0.47021 84.94 84.668 85.138 0 71 25 4 0 0 0 0.33405 1 47080 47080 24.991 3.454 1 5109400 50873 10893 34413 35198 59150 59150 0.04566222020457644 QSYYAKLLGEL 11 Unmodified _QSYYAKLLGEL_ 0 0 0 ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B ENSG00000273274|ENST00000609129|ZBTB8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.8455200195312 2 642.845353 1283.67615 -0.029202 -1.8772E-05 -0.18513 -0.00011901 -0.21434 -0.00013779 642.8452461275474 92.425 0.3893 92.425 92.233 92.622 0 97 30 4 0 0 0 0.33405 1 51147 51147 24.991 6.8446 1 10658000 50874 10893 34413 35198 59151 59151 0.04566222020457644 QSYYEIWFF 9 Unmodified _QSYYEIWFF_ 0 0 0 REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF REV__ENST00000548147.5_1_12:49047690-49047822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.792236328125 2 641.792589 1281.57063 0.13775 8.8408E-05 -0.090749 -5.8242E-05 0.047002 3.0166E-05 641.7925061281304 98.9 0.18224 98.706 98.63 98.812 -0.19321 14 5 4 0 0 0 0.51218 1 54017 54017 6.7232 0.99131 1 2528400 + 50875 28682 34414 35199 59152 59152 -0.05889694105167109 QTAATYMLTAR 11 Unmodified _QTAATYMLTAR_ 0 0 0 nc|ENSG00000234636|P0DP75|MED14OS;ENST00000456333.2_1_X:40594682-40597507:+|nuORF nc|ENSG00000234636|P0DP75|MED14OS nc|ENSG00000234636|P0DP75|MED14OS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.815673828125 2 613.81353 1225.61251 NaN NaN NaN NaN NaN NaN NaN 43.15 1 42.84 42.34 43.34 -0.31039 0 0 0 0.63856 1 22947 22947 19.362 4.1135 1 50876 13598 34415 35200 59153 59153 0.008725383117280217 QTAIFENPCL 10 Unmodified _QTAIFENPCL_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.3109130859375 2 568.276249 1134.53795 0.068882 3.9144E-05 -1.9461 -0.0011059 -1.8773 -0.0010668 568.2753487259922 69.776 0.2196 69.297 69.182 69.401 -0.47903 15 9 2 0 0 0 0.23162 1 38093 38093 8.1555 0 1 610400 + 50877 20399 34416 35201 59154 59154 -0.02394224499653319 QTAREMKKKI 10 Unmodified _QTAREMKKKI_ 0 0 0 ENST00000493234.1_1_11:1955154-1956368:+|nuORF;nc|ENSG00000130595|P45378-5|TNNT3;nc|ENSG00000130595|P45378-7|TNNT3;nc|ENSG00000130595|P45378-4|TNNT3;nc|ENSG00000130595|P45378-6|TNNT3;ENSG00000130595|ENST00000278317|TNNT3;nc|ENSG00000130595|P45378-3|TNNT3;nc|ENSG00000130595|P45378|TNNT3 ENST00000493234.1_1_11:1955154-1956368:+|nuORF ENST00000493234.1_1_11:1955154-1956368:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5769958496094 3 411.576302 1231.70708 -0.16232 -6.6808E-05 0.95293 0.0003922 0.7906 0.00032539 411.5766940567596 33.337 0.23049 33.366 33.231 33.461 0.028931 23 9 3 0 0 0 0.62665 1 17525 17525 9.7643 0.788 1 2961000 50878 4229 34417 35202 59155 59155 0.10049096853731498 QTASSMRSVLF 11 Unmodified _QTASSMRSVLF_ 0 0 0 REV__ENSG00000137494|ENST00000533342|ANKRD42 REV__ENSG00000137494|ENST00000533342|ANKRD42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8134155273438 2 613.81353 1225.61251 0.9206 0.00056508 -0.51306 -0.00031492 0.40754 0.00025015 613.8130207105737 92.18 1.9376 86.004 84.994 86.932 -6.1757 459 115 6 0 0 0 0.48615 1 60992 60992 17.113 17.113 1 3726699999.9999995 + 50879 20244 34418 35203 59156 59156 0.00872538311750759 QTAYFIGIF 9 Unmodified _QTAYFIGIF_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.279541015625 2 530.279118 1058.54368 0.45302 0.00024022 1.3228 0.00070147 1.7758 0.00094169 530.2796370935898 67.247 0.3907 67.265 67.064 67.455 0.018036 63 19 4 0 0 0 0.14 1 36961 36961 29.082 1.4528 1 41608000 50880 8321 34419 35204 59157 59157 0.016752420743159746 QTAYFIGIF 9 Unmodified _QTAYFIGIF_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2789306640625 2 530.279118 1058.54368 0.79645 0.00042234 -0.47256 -0.00025059 0.32389 0.00017175 530.2783743120821 75.581 0.69941 69.405 69.102 69.801 -6.1757 65 37 2 0 0 0 0.14 1 49303 49303 29.082 3.6823 1 14629000 50881 8321 34419 35204 59158 59158 0.016752420743159746 QTEALIHRAT 10 Unmodified _QTEALIHRAT_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.783447265625 2 570.312012 1138.60947 0.2633 0.00015016 -1.3514 -0.00077074 -1.0881 -0.00062058 570.3115846384229 73.398 0.27512 73.442 73.337 73.612 0.043983 24 11 3 0 0 0 0.23558 1 40412 40412 8.1555 0 1 951490 50882 2957 34420 35205 59159 59159 0.045710312492246885 QTELKRTF 8 Unmodified _QTELKRTF_ 0 0 0 ENSG00000151846|ENST00000281589|PABPC3 ENSG00000151846|ENST00000281589|PABPC3 ENSG00000151846|ENST00000281589|PABPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.787109375 2 511.785099 1021.55564 0.70772 0.0003622 2.3372 0.0011962 3.045 0.0015584 511.78683832805154 59.08 0.18419 59.019 58.943 59.127 -0.060719 13 8 2 0 0 0 0.76266 1 32210 32210 11.64 3.047 1 1113300 50883 6150 34421 35206 59160 59160 0.045728588175165896 QTEQVVLF 8 Unmodified _QTEQVVLF_ 0 0 0 REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF REV__ENST00000466855.1_1_7:150774852-150776190:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2607727050781 2 482.260925 962.507297 -0.038263 -1.8453E-05 0.13761 6.6366E-05 0.099352 4.7914E-05 482.2609861838685 70.823 0.37012 70.823 70.565 70.935 0 74 40 2 0 0 0 0.6895 1 39380 39380 18.135 0 1 3247300 + 50884 21961 34422 35207 59161 59161 0.024543651776298248 QTETRLLIL 9 Unmodified _QTETRLLIL_ 0 0 0 ENST00000504800.5_1_1:2525263-2526307:-|nuORF ENST00000504800.5_1_1:2525263-2526307:-|nuORF ENST00000504800.5_1_1:2525263-2526307:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7646484375 2 543.829506 1085.64446 0.67666 0.00036799 0.81307 0.00044217 1.4897 0.00081016 544.3316056044259 51.443 0.17373 51.443 51.302 51.475 0 10 7 2 0 0 0 0.21052 1 28427 28427 3.5965 0 1 852790 50885 14501 34423 35208 59162 59162 0.1050627405720661 QTEVSNEKKVE 11 Unmodified _QTEVSNEKKVE_ 0 0 0 REV__ENST00000402966.1_1_22:42090190-42091087:+|nuORF REV__ENST00000402966.1_1_22:42090190-42091087:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8877563476562 3 430.88938 1289.64631 NaN NaN NaN NaN NaN NaN NaN 38.437 1 38.437 37.937 38.937 0 0 0 0 0.94002 1 20532 20532 1.0136 0 1 + 50886 26624 34424 35209 59163 59163 0.013072382844711683 QTFRQQASGP 10 Unmodified _QTFRQQASGP_ 0 0 0 REV__ENSG00000129473|ENST00000250405|BCL2L2 REV__ENSG00000129473|ENST00000250405|BCL2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2802734375 2 560.280712 1118.54687 -0.26319 -0.00014746 0.39384 0.00022066 0.13065 7.32E-05 560.2809354303246 26.68 0.25216 26.68 26.551 26.803 0 36 11 4 0 0 0 0.25982 1 13721 13721 29.841 2.2118 1 5332300 + 50887 19668 34425 35210 59164 59164 -0.007661148189754385 QTIDFLVRF 9 Unmodified _QTIDFLVRF_ 0 0 0 REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.1987609863281 3 380.213358 1137.61824 1.3631 0.00051827 -1.4378 -0.00054668 -0.074717 -2.8408E-05 380.21299708364484 50.285 0.16277 50.236 50.148 50.31 -0.048828 15 7 3 0 0 0 0.209 1 27199 27199 4.5289 1.2092 1 655780 + 50888 28044 34426 35211 59165 59165 0.05494004885713366 QTIEWTLW 8 Unmodified _QTIEWTLW_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.774658203125 2 538.7742 1075.53385 1.1872 0.00063964 -0.48535 -0.0002615 0.70187 0.00037815 538.7737731775148 95.565 1.3581 89.39 88.912 90.27 -6.1757 216 81 4 0 0 0 0.62219 2 63439 63188;63439 30.225 6.7402 1 170050000 + 50889 20095 34427 35212 59166;59167 59167 -0.0008994593106308457 QTIINMLLY 9 Unmodified _QTIINMLLY_ 0 0 0 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8065185546875 2 554.807185 1107.59982 0.27812 0.0001543 1.0315 0.00057229 1.3096 0.00072659 554.8087932189537 77.004 0.23554 77.054 76.848 77.084 0.05011 16 9 2 0 0 0 0.15471 1 42460 42460 27.629 1.3607 1 7566300 + 50890 24212 34428 35213 59168 59168 0.050321269195137575 QTIINMLLY 9 Unmodified _QTIINMLLY_ 0 0 0 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 554.807185 1107.59982 -0.42729 -0.00023706 -2.7474 -0.0015243 -3.1747 -0.0017614 554.8056562455945 77.482 0.36288 76.999 76.827 77.189 -0.4826 -0.027703 -0.00015359 NaN 27.629 39 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4407100 + 50891 24212 34428 35213 0.050321269195137575 QTIINMLLY 9 Unmodified _QTIINMLLY_ 0 0 0 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 REV__nc|ENSG00000205060|Q969S0-3|SLC35B4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.807185 1107.59982 0.27812 0.0001543 1.0315 0.00057229 1.3096 0.00072659 554.8087932189537 77.004 0.23554 77.054 76.848 77.084 0.05011 0.027703 0.0040396 NaN 27.629 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 7566300 + 50892 24212 34428 35213 0.050321269195137575 QTKDKLLL 8 Unmodified _QTKDKLLL_ 0 0 0 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.8000793457031 2 479.800217 957.585882 0.1851 8.881E-05 -0.58917 -0.00028269 -0.40408 -0.00019388 479.79997209429473 62.253 0.32827 62.253 62.018 62.346 0 25 16 2 0 0 0 0.71527 1 34655 34655 15.847 1.9411 1 3594900 + 50893 20878 34429 35214 59169 59169 0.1053921748269886 QTKIPRGN 8 Unmodified _QTKIPRGN_ 0 0 0 ENSG00000146070|ENST00000274793|PLA2G7 ENSG00000146070|ENST00000274793|PLA2G7 ENSG00000146070|ENST00000274793|PLA2G7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.264892578125 2 457.264333 912.514114 0.20856 9.5368E-05 0.6564 0.00030015 0.86496 0.00039552 457.26462715317695 23.322 0.23292 20.544 20.448 20.681 -2.7784 27 16 2 0 0 0 0.30525 1 12657 12657 54.774 2.5052 1 4132200 50894 5751 34430 35215 59170 59170 0.05435722848858404 QTKIRKWMYFD 11 Unmodified _QTKIRKWMYFD_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54;nc|ENSG00000166348|Q70EL1-4|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.929443359375 3 505.930745 1514.7704 0.35203 0.0001781 -2.2937 -0.0011605 -1.9417 -0.00098237 505.92939073138234 51.024 0.30434 50.97 50.823 51.127 -0.053871 32 14 3 0 0 0 0.70147 1 27603 27603 4.1166 2.787 1 4736700 50895 7477 34431 35216 59171 59171 0.03361037570948611 QTKLEWDEP 9 Unmodified _QTKLEWDEP_ 0 0 0 REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF REV__ENST00000472011.5_1_1:235582749-235612074:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2791137695312 2 573.277303 1144.54005 NaN NaN NaN NaN NaN NaN NaN 84.774 1 84.774 84.274 85.274 0 0 0 0 0.85029 1 46991 46991 1.4819 0.15237 1 + 50896 27509 34432 35217 59172 59172 -0.02643472490217391 QTKQEKKE 8 Unmodified _QTKQEKKE_ 0 0 0 ENST00000607746.1_1_3:107854124-107855282:+|nuORF ENST00000607746.1_1_3:107854124-107855282:+|nuORF ENST00000607746.1_1_3:107854124-107855282:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1018.230773925781 1 1018.55275 1017.54547 -0.21339 -0.00021734 -0.063387 -6.4563E-05 -0.27677 -0.00028191 1018.5561277031484 45.05 0.1126 44.726 44.62 44.732 -0.32425 7 5 2 0 0 0 8.7369 1 24000 24000 5.2307 0 1 26010000 50897 15865 34433 35218 59173 59173 0.03740251092278868 QTKTEYYAI 9 Unmodified _QTKTEYYAI_ 0 0 0 REV__nc|ENSG00000154027|Q9Y6K8-3|AK5 REV__nc|ENSG00000154027|Q9Y6K8-3|AK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7825317382812 2 558.782222 1115.54989 0.40591 0.00022681 0.70777 0.00039549 1.1137 0.0006223 558.7824638645052 43.277 0.27503 43.277 43.143 43.418 0 32 13 3 0 0 0 0.018301 1 23477 23477 65.235 17.486 1 15414000 + 50898 21205 34434 35219 59174 59174 -0.0032628448482228123 QTKVEGAVNK 10 Unmodified _QTKVEGAVNK_ 0 0 0 REV__ENSG00000130508|ENST00000252804|PXDN REV__ENSG00000130508|ENST00000252804|PXDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2987060546875 2 537.301113 1072.58767 0.9312 0.00050033 -1.5269 -0.00082039 -0.59568 -0.00032006 537.3007176999686 80.04 2.0203 73.864 72.238 74.258 -6.1757 276 120 4 0 0 0 0.32072 1 52427 52427 26.268 0.86883 1 243440000 + 50899 19723 34435 35220 59175 59175 0.05428226500657729 QTLDKVYQM 9 Oxidation (M) _QTLDKVYQM(Oxidation (M))_ QTLDKVYQM(1) QTLDKVYQM(86) 0 0 1 nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF nc|ENSG00000064012|Q14790-2|CASP8 nc|ENSG00000064012|Q14790-2|CASP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2818603515625 2 571.281531 1140.54851 -0.37381 -0.00021355 -0.46954 -0.00026824 -0.84336 -0.00048179 571.2811393714027 27.363 0.25545 27.363 27.232 27.488 0 19 12 2 0 0 0 0.0090524 1 14092 14092 85.642 55.005 1 3193100 50900 867 34436 35221 59176 59176 135 -0.016142418452318452 QTLKEYNL 8 Unmodified _QTLKEYNL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7712707519531 2 504.771657 1007.52876 0.62804 0.00031701 -0.19163 -9.6727E-05 0.43641 0.00022029 504.77173343972845 68.103 0.6736 61.928 61.583 62.257 -6.1757 91 39 3 0 0 0 0.25522 1 44270 44270 61.357 7.9535 1 408140000 50901 4372 34437 35222 59177 59177 0.025297502063153843 QTLLRIALLVP 11 Unmodified _QTLLRIALLVP_ 0 0 0 REV__ENST00000264431.8_1_4:160271366-160274004:+|nuORF REV__ENST00000264431.8_1_4:160271366-160274004:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 413.1699829101562 3 412.939458 1235.79654 NaN NaN NaN NaN NaN NaN NaN 14.993 1 12.466 11.966 12.966 -2.5273 0 0 0 0.94216 1 7657 7657 0.32927 0.093427 1 + 50902 25072 34438 35223 59178 59178 0.18807674804725139 QTLRHPIF 8 Unmodified _QTLRHPIF_ 0 0 0 ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1 ENST00000531756.5_1_11:74862426-74914042:+|nuORF ENST00000531756.5_1_11:74862426-74914042:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.3501892089844 2 506.290351 1010.56615 1.1028 0.00055832 0.48051 0.00024328 1.5833 0.0008016 506.29058013090594 87.724 0.38023 81.548 81.385 81.765 -6.1757 33 20 2 0 0 0 8.7369 1 57915 57915 28.487 0 1 25375000 50903 4938 34439 35224 59179 59179 0.061288862626156515 QTLRVEKVPSF 11 Unmodified _QTLRVEKVPSF_ 0 0 0 ENSG00000014824|ENST00000264451|SLC30A9;ENST00000510460.1_1_4:41992668-42022533:+|nuORF ENSG00000014824|ENST00000264451|SLC30A9 ENSG00000014824|ENST00000264451|SLC30A9 MSMS AL20221201_MKP_PDAC_01 4 652.4326171875 2 652.372069 1302.72959 NaN NaN NaN NaN NaN NaN NaN 104.15 1 97.979 97.479 98.479 -6.1757 0 0 0 0.94181 1 69771 69771 1.1933 0 1 50904 487 34440 35225 59180 59180 0.09033019522985342 QTLSNEIIM 9 Unmodified _QTLSNEIIM_ 0 0 0 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7723999023438 2 524.7708 1047.52705 0.9389 0.00049271 -0.3076 -0.00016142 0.6313 0.00033129 524.7707640837635 40.653 0.50097 36.123 35.889 36.39 -4.5294 81 30 3 0 0 0 0.14 1 24202 24202 29.082 3.6823 1 76658000 50905 3577 34441 35226 59181 59181 0.005183731260558488 QTLTRFAE 8 Unmodified _QTLTRFAE_ 0 0 0 ENSG00000170807|ENST00000458573|LMOD2 ENSG00000170807|ENST00000458573|LMOD2 ENSG00000170807|ENST00000458573|LMOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2563781738281 2 483.256174 964.497795 -0.33547 -0.00016212 0.39749 0.00019209 0.062027 2.9975E-05 483.25622217456174 31.916 0.48394 31.916 31.6 32.084 0 52 23 3 0 0 0 0.32798 1 16667 16667 52.268 6.2474 1 8720000 50906 8026 34442 35227 59182 59182 0.014125968920893683 QTMVIHDDLL 10 Unmodified _QTMVIHDDLL_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.8101196289062 2 592.802631 1183.59071 0.61586 0.00036508 0.33103 0.00019624 0.9469 0.00056132 592.8025343430224 82.712 1.7729 82.215 81.495 83.268 -0.49751 188 73 5 0 0 0 0.67033 1 45100 45100 6.2058 2.2614 1 74481000 + 50907 18935 34443 35228 59183 59183 0.00625733563151698 QTNLILQTF 9 Unmodified _QTNLILQTF_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3011474609375 2 539.300581 1076.58661 0.76678 0.00041352 -0.39421 -0.0002126 0.37257 0.00020092 539.3002127159253 79.497 0.59676 79.008 78.616 79.212 -0.48933 63 25 4 0 0 0 0.0017364 2 43575 43477;43575 134.3 23.621 1 8929000 50908 3024 34444 35229 59184;59185 59185 0.05138012131760661 QTNLILQTF 9 Unmodified _QTNLILQTF_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3009643554688 2 539.300581 1076.58661 0.38393 0.00020705 0.10312 5.561E-05 0.48705 0.00026266 539.3003846584066 78.981 0.2697 79.036 78.86 79.13 0.054977 17 10 2 0 0 0 0.0086904 1 43617 43617 107.19 14.696 1 2124500 50909 3024 34444 35229 59186 59186 0.05138012131760661 QTNLILQTF 9 Unmodified _QTNLILQTF_ 0 0 0 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 ENSG00000114209|ENST00000392750|PDCD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.301513671875 2 539.300581 1076.58661 1.1021 0.00059438 0.6885 0.00037131 1.7906 0.00096569 539.3010277969059 86.682 0.48367 80.506 80.247 80.731 -6.1757 45 25 2 0 0 0 0.0013034 2 57181 57064;57181 137.42 23.222 1 29517000 50910 3024 34444 35229 59187;59188 59188 0.05138012131760661 QTPAFMGAEKI 11 Unmodified _QTPAFMGAEKI_ 0 0 0 REV__ENSG00000161217|ENST00000431016|PCYT1A REV__ENSG00000161217|ENST00000431016|PCYT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.20458984375 3 398.205875 1191.59579 -0.61989 -0.00024684 -1.7666 -0.00070346 -2.3865 -0.0009503 398.20519426939836 26.762 0.44106 26.762 26.571 27.012 0 32 20 2 0 0 0 0.7187 1 13711 13711 1.0136 0 1 729020 + 50911 21589 34445 35230 59189 59189 0.007660374257739022 QTPQLLVASC 10 Unmodified _QTPQLLVASC_ 0 0 0 REV__ENST00000532586.1_1_11:62557096-62557147:+|nuORF REV__ENST00000532586.1_1_11:62557096-62557147:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.26025390625 2 530.278792 1058.54303 0.5321 0.00028216 3.0913 0.0016393 3.6234 0.0019214 530.2798526924829 67.772 0.37965 67.29 67.096 67.475 -0.48219 45 16 4 0 0 0 0.21618 1 36956 36956 26.268 2.2476 1 8879300 + 50912 28467 34446 35231 59190 59190 0.016100793629675536 QTPQLYIAY 9 Unmodified _QTPQLYIAY_ 0 0 0 REV__ENSG00000129173|ENST00000250024|E2F8 REV__ENSG00000129173|ENST00000250024|E2F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1916198730469 3 366.193963 1095.56006 -0.30753 -0.00011262 -3.2331 -0.001184 -3.5407 -0.0012966 366.19235484783474 23.291 0.1649 23.291 23.222 23.387 0 10 7 2 0 0 0 0.53666 1 11913 11913 2.9952 0 1 258790 + 50913 19654 34447 35232 59191 59191 0.016103232404020673 QTPQSPSQNMF 11 Unmodified _QTPQSPSQNMF_ 0 0 0 nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4 nc|ENSG00000179242|P55283-2|CDH4 nc|ENSG00000179242|P55283-2|CDH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.86083984375 3 422.192405 1263.55539 -0.62498 -0.00026386 0.23863 0.00010075 -0.38635 -0.00016312 422.19258728245694 15.729 0.35845 15.729 15.508 15.866 0 260 90 4 0 0 0 0.7326 1 7520 7520 0.40827 0 1 3378700 50914 8820 34448 35233 59192 59192 -0.0658492896466214 QTQISETNVIL 11 Unmodified _QTQISETNVIL_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.339599609375 2 623.337892 1244.66123 0.6837 0.00042618 0.42337 0.00026391 1.1071 0.00069008 623.3378420449699 60.218 0.2768 60.218 60.068 60.345 0 26 11 3 0 0 0 0.53099 1 33616 33616 23.79 15.634 1 1377400 + 50915 7667 34449 35234 59193 59193 0.04868730152475109 QTQKILALF 9 Unmodified _QTQKILALF_ 0 0 0 ENSG00000198780|ENST00000687041|FAM169A;nc|ENSG00000198780|Q9Y6X4-2|FAM169A ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3215942382812 2 531.321317 1060.62808 0.73788 0.00039205 0.14524 7.7167E-05 0.88312 0.00046922 531.3212749437763 71.612 0.46393 71.651 71.386 71.85 0.039024 61 21 5 0 0 0 0.0071894 1 39428 39428 111.29 40.153 1 6402800 50916 10148 34450 35235 59194 59194 0.1001919289108173 QTQKILALF 9 Unmodified _QTQKILALF_ 0 0 0 ENSG00000198780|ENST00000687041|FAM169A;nc|ENSG00000198780|Q9Y6X4-2|FAM169A ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A MSMS AL20221201_MKP_PDAC_01 4 531.3236083984375 2 531.321317 1060.62808 NaN NaN NaN NaN NaN NaN NaN 89.618 1 83.442 82.942 83.942 -6.1757 0 0 0 0.083082 1 59164 59164 47.749 7.7914 1 50917 10148 34450 35235 59195 59195 0.1001919289108173 QTQNFLCGPL 10 Unmodified _QTQNFLCGPL_ 0 0 0 nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3;nc|ENSG00000143257|Q14994-16|NR1I3;nc|ENSG00000143257|Q14994-4|NR1I3;nc|ENSG00000143257|Q14994-9|NR1I3;nc|ENSG00000143257|Q14994-10|NR1I3;nc|ENSG00000143257|Q14994-11|NR1I3;nc|ENSG00000143257|Q14994-5|NR1I3;nc|ENSG00000143257|Q14994-6|NR1I3 nc|ENSG00000143257|Q14994-15|NR1I3 nc|ENSG00000143257|Q14994-15|NR1I3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2352294921875 2 560.776416 1119.53828 0.59431 0.00033328 0.7505 0.00042086 1.3448 0.00075414 560.7770131032572 48.485 0.14013 48.113 47.983 48.123 -0.37172 9 6 2 0 0 0 0.23412 1 26027 26027 5.7319 0 1 1026000 50918 5484 34451 35236 59196 59196 -0.01670804779791979 QTRLRRGRCA 10 Unmodified _QTRLRRGRCA_ 0 0 0 REV__ENST00000515130.5_1_4:128886407-128887124:-|nuORF REV__ENST00000515130.5_1_4:128886407-128887124:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2332153320312 3 406.23164 1215.67309 NaN NaN NaN NaN NaN NaN NaN 64.352 1 64.352 63.852 64.852 0 0 0 0 0.99388 1 35887 35887 1.5923 0 1 + 50919 28207 34452 35237 59197 59197 0.07388113205365698 QTRRALCYDL 10 Unmodified _QTRRALCYDL_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MSMS AL20221201_MKP_PDAC_01 4 413.5503845214844 3 413.548523 1237.62374 NaN NaN NaN NaN NaN NaN NaN 46.415 1 41.335 40.835 41.835 -5.0805 0 0 0 0.68942 1 28661 28661 14.957 2.6068 1 + 50920 20564 34453 35238 59198 59198 0.014433604058694982 QTRSLLLFLL 10 Unmodified _QTRSLLLFLL_ 0 0 0 REV__ENST00000394479.3_1_2:61144110-61145349:+|nuORF REV__ENST00000394479.3_1_2:61144110-61145349:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3775634765625 2 602.376623 1202.73869 0.96293 0.00058005 0.12942 7.7958E-05 1.0923 0.000658 602.3765631050113 105.99 0.97316 99.811 99.547 100.52 -6.1757 345 148 3 0 0 0 0.72196 1 70904 70904 0.45834 0 1 11909000 + 50921 26449 34454 35239 59199 59199 0.14543412879334028 QTRYAFTY 8 Unmodified _QTRYAFTY_ 0 0 0 REV__nc|ENSG00000148516|P37275-3|ZEB1 REV__nc|ENSG00000148516|P37275-3|ZEB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2577514648438 2 525.256174 1048.49779 0.34891 0.00018327 1.7995 0.00094517 2.1484 0.0011284 525.2570728493354 43.396 0.19957 43.396 43.262 43.461 0 16 9 2 0 0 0 0.6895 1 23570 23570 18.135 5.6034 1 2881300 + 50922 20958 34455 35240 59200 59200 -0.024514031078979315 QTRYAFTY 8 Unmodified _QTRYAFTY_ 0 0 0 REV__nc|ENSG00000148516|P37275-3|ZEB1 REV__nc|ENSG00000148516|P37275-3|ZEB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 525.256174 1048.49779 0.34891 0.00018327 1.7995 0.00094517 2.1484 0.0011284 525.2570728493354 43.396 0.19957 43.396 43.262 43.461 0 0 0 NaN 18.135 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2881300 + 50923 20958 34455 35240 -0.024514031078979315 QTTEEEDGE 9 Unmodified _QTTEEEDGE_ 0 0 0 REV__ENST00000569186.5_1_16:71898712-71901814:-|nuORF REV__ENST00000569186.5_1_16:71898712-71901814:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2789306640625 2 519.198916 1036.38328 0.42567 0.00022101 -1.0904 -0.00056611 -0.66468 -0.0003451 519.1983172738746 62.832 0.23901 62.345 62.262 62.501 -0.48617 22 11 3 0 0 0 0.20139 1 34262 34262 6.7232 2.7788 1 6914600 + 50924 18272 34456 35241 59201 59201 -0.13345802171170362 QTTRHPAL 8 Unmodified _QTTRHPAL_ 0 0 0 ENST00000314412.6_1_9:139924917-139925142:-|nuORF ENST00000314412.6_1_9:139924917-139925142:-|nuORF ENST00000314412.6_1_9:139924917-139925142:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.2567749023438 2 462.256508 922.498464 NaN NaN NaN NaN NaN NaN NaN 70.058 1 63.883 63.383 64.383 -6.1757 0 0 0 0.63034 1 45762 45762 32.117 5.7757 1 50925 11724 34457 35242 59202 59202 0.03411436331805362 QTTYTECC 8 Unmodified _QTTYTECC_ 0 0 0 ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.3424682617188 1 948.343745 947.336468 -0.095183 -9.0266E-05 0.023926 2.269E-05 -0.071257 -6.7576E-05 948.34346998732 65.792 0.53936 59.617 59.266 59.805 -6.1757 59 31 2 0 0 0 0.80992 1 42787 42787 0.69038 0 1 37720000 50926 709 34458 35243 59203 59203 -0.1393065652766836 QTVVQTFS 8 Unmodified _QTVVQTFS_ 0 0 0 ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1;nc|ENSG00000106459|Q16656-3|NRF1 ENSG00000106459|ENST00000393232|NRF1 ENSG00000106459|ENST00000393232|NRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.467041015625 1 909.467623 908.460347 0.073403 6.6758E-05 0.37751 0.00034334 0.45092 0.00041009 909.4672410349166 55.955 0.37569 50.034 49.819 50.195 -5.9211 24 21 2 0 0 0 0.17811 1 35611 35611 78.728 8.396 1 17985000 50927 2428 34459 35244 59204 59204 0.0024550562648073537 QTYYICFDTF 10 Unmodified _QTYYICFDTF_ 0 0 0 ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1;ENST00000588953.1_1_18:60506025-60506217:+|nuORF ENSG00000081913|ENST00000262719|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.7808837890625 2 650.781364 1299.54818 NaN NaN NaN NaN NaN NaN NaN 72.194 1 71.717 71.217 72.217 -0.47609 0 0 0 0.99091 1 39507 39507 1.6526 0 1 50928 1334 34460 35245 59205 59205 -0.08961661565081158 QVACLEQQLF 10 Unmodified _QVACLEQQLF_ 0 0 0 REV__ENST00000485807.1_1_1:227920095-227920875:-|nuORF REV__ENST00000485807.1_1_1:227920095-227920875:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5341491699219 3 393.533991 1177.58014 1.3222 0.00052032 2.1246 0.00083611 3.4468 0.0013564 393.53474600005785 50.219 0.30368 50.17 49.947 50.25 -0.048824 24 14 3 0 0 0 0.65891 1 27144 27144 7.4771 2.1802 1 2469300 + 50929 17693 34461 35246 59206 59206 -0.0015424909126977582 QVADIDGQY 9 Unmodified _QVADIDGQY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7347717285156 2 504.735271 1007.45599 0.99154 0.00050046 -0.79288 -0.00040019 0.19866 0.00010027 504.73477562784745 36.517 0.21883 36.517 36.409 36.628 0 18 10 2 0 0 0 0.03568 1 19390 19390 52.268 14.294 1 4091200 50930 7707 34462 35247 59207 59207 -0.047440035870977226 QVAEGPGF 8 Unmodified _QVAEGPGF_ 0 0 0 ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENST00000484651.5_1_4:1725148-1739714:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.3880004882812 1 804.388645 803.381368 0.21421 0.00017231 -0.20293 -0.00016324 0.011279 9.0729E-06 804.3892096718257 60.941 0.23244 60.941 60.863 61.095 0 21 9 3 0 0 0 0.31612 1 33974 33974 53.576 0 1 1334100 50931 14155 34463 35248 59208 59208 -0.028187216078094934 QVAEIVSKY 9 Unmodified _QVAEIVSKY_ 0 0 0 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7880249023438 2 518.787307 1035.56006 0.29181 0.00015139 0.67521 0.00035029 0.96702 0.00050168 518.787631802197 37.636 0.25345 37.636 37.51 37.764 0 31 12 3 0 0 0 0.037253 1 20037 20037 51.415 25.147 1 9042400 50932 5057 34464 35249 59209 59209 0.043703232404368464 QVAEIVSKY 9 Unmodified _QVAEIVSKY_ 0 0 0 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.78759765625 2 518.787307 1035.56006 0.97962 0.00050821 -0.41631 -0.00021598 0.5633 0.00029224 518.7869385757484 42.845 0.38679 38.161 37.952 38.339 -4.6846 47 24 3 0 0 0 0.0085366 1 25937 25937 90.135 50.185 1 20076000 50933 5057 34464 35249 59210 59210 0.043703232404368464 QVAGDAKDK 9 Unmodified _QVAGDAKDK_ 0 0 0 nc|ENSG00000149294|P13591-6|NCAM1;nc|ENSG00000149294|P13591-5|NCAM1;nc|ENSG00000149294|P13591-4|NCAM1;nc|ENSG00000149294|P13591-3|NCAM1;nc|ENSG00000149294|P13591-1|NCAM1;ENSG00000149294|ENST00000316851|NCAM1 nc|ENSG00000149294|P13591-6|NCAM1 nc|ENSG00000149294|P13591-6|NCAM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.243896484375 2 466.245806 930.47706 NaN NaN NaN NaN NaN NaN NaN 38.331 1 38.331 37.831 38.831 0 0 0 0 0.083082 1 20467 20467 47.749 1.7277 1 50934 6000 34465 35250 59211 59211 0.009040065124281682 QVAGPLLRYY 10 Unmodified _QVAGPLLRYY_ 0 0 0 REV__nc|ENSG00000204961|Q9Y5H5-2|PCDHA9 REV__nc|ENSG00000204961|Q9Y5H5-2|PCDHA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3302001953125 2 590.329673 1178.64479 1.0271 0.0006063 -0.69463 -0.00041006 0.33242 0.00019624 590.3293774378201 66.368 0.33823 66.377 66.202 66.54 0.0095596 40 16 3 0 0 0 0.51153 1 36430 36430 18.146 3.3081 1 8738000 + 50935 29913 34466 35251 59212 59212 0.0626169377703718 QVAKILLLL 9 Unmodified _QVAKILLLL_ 0 0 0 REV__nc|ENSG00000187048|Q02928-2|CYP4A11 REV__nc|ENSG00000187048|Q02928-2|CYP4A11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3058776855469 2 505.852253 1009.68995 0.26715 0.00013514 0.14607 7.389E-05 0.41322 0.00020903 505.85197050511937 55.218 0.12131 55.15 55.076 55.198 -0.068737 10 5 2 0 0 0 0.21819 1 30004 30004 2.0598 0 1 591170 + 50936 23617 34467 35252 59213 59213 0.18549544310246802 QVAPVANSY 9 Unmodified _QVAPVANSY_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7438354492188 2 474.742899 947.471246 -0.26041 -0.00012363 -0.25118 -0.00011925 -0.51159 -0.00024287 474.74276449277005 33.394 0.24725 33.394 33.223 33.47 0 30 12 3 0 0 0 0.012148 1 17453 17453 74.423 40.32 1 30910000 50937 6528 34468 35253 59214 59214 -0.004590919992438103 QVAPVANSY 9 Unmodified _QVAPVANSY_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.4791870117188 1 948.478522 947.471246 -0.90138 -0.00085494 0.53933 0.00051154 -0.36206 -0.0003434 948.479077726072 33.388 0.1693 33.388 33.264 33.434 0 20 8 3 0 0 0 0.0021556 1 17460 17460 131.27 76.494 1 6778800 50938 6528 34468 35253 59215 59215 -0.004590919992438103 QVAPVANSY 9 Unmodified _QVAPVANSY_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7432556152344 2 474.742899 947.471246 0.8683 0.00041222 4.0495 0.0019224 4.9178 0.0023347 474.7446925691376 39.25 0.59836 34.799 34.399 34.997 -4.4509 82 37 3 0 0 0 0.0088174 2 23339 23205;23339 103.75 48.975 1 56929000 50939 6528 34468 35253 59216;59217 59217 -0.004590919992438103 QVAPVANSY 9 Unmodified _QVAPVANSY_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.4788818359375 1 948.478522 947.471246 0.46099 0.00043724 0.88778 0.00084204 1.3488 0.0012793 948.4793908986317 39.243 0.33438 34.792 34.645 34.98 -4.4509 41 20 3 0 0 0 7.9238E-51 3 23349 23222;23289;23349 240.41 136.66 1 12978000 50940 6528 34468 35253 59218;59219;59220 59220 -0.004590919992438103 QVCAIIERV 9 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))AIIERV_ QVC(1)AIIERV QVC(110)AIIERV 0 1 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3009033203125 2 544.300059 1086.58556 0.57836 0.0003148 -0.13272 -7.2238E-05 0.44564 0.00024256 544.3002215001418 53.354 0.42456 47.549 47.334 47.759 -5.8042 80 26 4 0 0 0 0.0074582 2 33614 33614;33749 110.55 60.62 1 103060000 50941 9221 34469 35254 59221;59222 59221 862 0.045734744911896996 QVCERIPTI 9 Carbamidomethyl (C) _QVC(Carbamidomethyl (C))ERIPTI_ QVC(1)ERIPTI QVC(160)ERIPTI 0 1 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2986450195312 2 558.297516 1114.58048 1.1187 0.00062459 -0.47157 -0.00026327 0.64718 0.00036132 558.2971631685558 52.929 0.5133 47.124 46.906 47.419 -5.8042 41 28 2 0 0 0 2.2236E-06 2 33477 33362;33477 157.8 92.56 1 38053000 50942 613 34470 35255 59223;59224 59224 42 0.02777170628564818 QVCPLLQPF 9 Unmodified _QVCPLLQPF_ 0 0 0 REV__ENSG00000186143|ENST00000335524|PRR30 REV__ENSG00000186143|ENST00000335524|PRR30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7792358398438 2 522.78097 1043.54739 NaN NaN NaN NaN NaN NaN NaN 57.449 1 57.449 56.949 57.949 0 0 0 0 0.071041 1 31968 31968 50.855 14.728 1 + 50943 23555 34471 35256 59225 59225 0.027355885765246057 QVCVLHVDPDF 11 Unmodified _QVCVLHVDPDF_ 0 0 0 REV__ENST00000369503.8_1_1:116574121-116577852:+|nuORF REV__ENST00000369503.8_1_1:116574121-116577852:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 636.3609008789062 2 636.308081 1270.60161 1.4133 0.0008993 -1.6984 -0.0010807 -0.28514 -0.00018144 636.3071326601828 98.301 0.16206 92.125 92 92.163 -6.1757 18 10 3 0 0 0 0.29698 1 65113 65113 5.2969 1.7004 1 28930000 + 50944 26037 34472 35257 59226 59226 -0.0228686406255747 QVDDGIPSY 9 Unmodified _QVDDGIPSY_ 0 0 0 REV__ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant REV__ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.44580078125 1 993.452367 992.445091 -0.86867 -0.00086299 -3.4075 -0.0033852 -4.2762 -0.0042482 993.4489284212144 55.448 0.12002 55.448 55.389 55.509 0 6 4 2 0 0 0 0.55144 1 30820 30820 4.3292 0 1 418550 + 50945 16728 34473 35258 59227 59227 -0.05143405961382541 QVDDIKRVY 9 Unmodified _QVDDIKRVY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2080078125 3 379.208384 1134.60332 -0.6745 -0.00025578 -0.33645 -0.00012758 -1.0109 -0.00038336 379.2082161334771 27.376 0.21631 27.376 27.253 27.469 0 19 10 2 0 0 0 0.15471 1 14099 14099 20.581 6.1756 1 14185000 50946 9127 34474 35259 59228 59228 0.04140513017705416 QVDDIKRVY 9 Unmodified _QVDDIKRVY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2088928222656 3 379.208384 1134.60332 1.4637 0.00055505 0.40288 0.00015278 1.8666 0.00070783 379.20848015136846 30.915 0.36819 27.418 27.175 27.543 -3.497 25 16 2 0 0 0 0.085319 1 17437 17437 28.234 10.791 1 61258000 50947 9127 34474 35259 59229 59229 0.04140513017705416 QVDDIKRVY 9 Unmodified _QVDDIKRVY_ 0 0 0 nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 nc|ENSG00000183207|Q9Y230-2|RUVBL2 MSMS AL20221201_MKP_PDAC_01 4 568.3107299804688 2 568.308938 1134.60332 NaN NaN NaN NaN NaN NaN NaN 30.981 1 27.484 26.984 27.984 -3.497 0 0 0 0.18351 1 17516 17516 32.786 10.049 1 50948 9127 34474 35259 59230 59230 0.04140513017705416 QVDENQQQFI 10 Unmodified _QVDENQQQFI_ 0 0 0 ENSG00000196911|ENST00000368564|KPNA5 ENSG00000196911|ENST00000368564|KPNA5 ENSG00000196911|ENST00000368564|KPNA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.76806640625 2 624.796392 1247.57823 -0.26365 -0.00016473 0.25085 0.00015673 -0.012801 -7.9982E-06 624.7963104317089 76.803 0.18187 76.324 76.255 76.437 -0.47945 12 7 2 0 0 0 0.22811 1 42085 42085 3.2813 0 1 386600 50949 9881 34475 35260 59231 59231 -0.03565586575518864 QVDGGRLEAEL 11 Unmodified _QVDGGRLEAEL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.8069458007812 2 593.806759 1185.59897 -0.12061 -7.1617E-05 0.028842 1.7126E-05 -0.091765 -5.449E-05 593.8067937725249 43.475 0.3084 43.475 43.341 43.649 0 40 14 4 0 0 0 0.014635 2 23691 23579;23691 84.522 30.743 1 35806000 + 50950 199 34476 35261 59232;59233 59233 0.013590038041684238 QVDGGRLEAEL 11 Unmodified _QVDGGRLEAEL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8059692382812 2 593.806759 1185.59897 0.72511 0.00043057 -1.1803 -0.00070087 -0.45518 -0.00027029 593.806046881047 49.382 0.30558 43.986 43.809 44.114 -5.3961 31 18 2 0 0 0 0.085069 1 30908 30908 61.09 17.232 1 53693000 + 50951 199 34476 35261 59234 59234 0.013590038041684238 QVDLFGLKF 9 Unmodified _QVDLFGLKF_ 0 0 0 REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.2029724121094 3 356.20257 1065.58588 -0.031361 -1.1171E-05 1.2191 0.00043423 1.1877 0.00042306 356.2029275320321 38.77 0.22607 38.483 38.382 38.608 -0.28687 26 10 3 0 0 0 0.54444 1 20431 20431 2.7352 0 1 4198600 + 50952 27346 34477 35262 59235 59235 0.055712174827021954 QVDLFGLKF 9 Unmodified _QVDLFGLKF_ 0 0 0 REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 356.20257 1065.58588 -0.031361 -1.1171E-05 1.2191 0.00043423 1.1877 0.00042306 356.2029275320321 38.77 0.22607 38.483 38.382 38.608 -0.28687 0.048229 7.5037E-05 NaN 2.7352 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4198600 + 50953 27346 34477 35262 0.055712174827021954 QVDLFGLKF 9 Unmodified _QVDLFGLKF_ 0 0 0 REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 356.20257 1065.58588 -0.0058279 -2.0759E-06 0.9449 0.00033658 0.93908 0.0003345 356.20298121621005 38.369 0.22181 38.386 38.239 38.46 0.01704 -0.048229 -0.00021793 NaN 2.7352 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1597800 + 50954 27346 34477 35262 0.055712174827021954 QVDLSVHAY 9 Unmodified _QVDLSVHAY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2618408203125 2 516.261456 1030.50836 1.0115 0.00052218 -1.7479 -0.00090236 -0.73642 -0.00038018 516.2609386268971 48.5 0.27816 43.104 42.962 43.24 -5.3961 31 16 2 0 0 0 0.12841 1 30161 30161 30.225 9.3536 1 26518000 50955 7082 34478 35263 59236 59236 -0.005674204534898308 QVDPKKRISM 10 Unmodified _QVDPKKRISM_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-6|MELK;nc|ENSG00000165304|Q14680-3|MELK nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2298278808594 3 401.228902 1200.66488 1.1641 0.00046707 -0.042829 -1.7184E-05 1.1213 0.00044989 401.22899889678854 21.82 0.39086 19.085 18.9 19.291 -2.7348 57 21 4 0 0 0 0.13297 2 11687 11687;11800 36.395 27.419 1 9424400 50956 7323 34479 35264 59237;59238 59237 0.07257121445331904 QVEGECCKYS 10 Unmodified _QVEGECCKYS_ 0 0 0 ENSG00000080007|ENST00000370336|DDX43 ENSG00000080007|ENST00000370336|DDX43 ENSG00000080007|ENST00000370336|DDX43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2341918945312 2 573.233724 1144.45289 -0.27754 -0.0001591 -0.35622 -0.0002042 -0.63376 -0.00036329 573.233746862664 34.708 0.19645 34.708 34.597 34.793 0 24 9 3 0 0 0 0.54684 1 18307 18307 13.906 1.3745 1 6101700 50957 1290 34480 35265 59239 59239 -0.11355338027760808 QVEIDKTLPVF 11 Unmodified _QVEIDKTLPVF_ 0 0 0 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2434692382812 3 430.243094 1287.70745 0.86998 0.0003743 1.0894 0.00046872 1.9594 0.00084302 430.24361571312903 91.26 0.41646 85.085 84.873 85.29 -6.1757 32 23 2 0 0 0 0.61059 1 60323 60323 5.8681 1.7515 1 10962000 50958 1488 34481 35266 59240 59240 0.07510795054554364 QVELNLQNASS 11 Unmodified _QVELNLQNASS_ 0 0 0 ENSG00000183542|ENST00000309384|KLRC4 ENSG00000183542|ENST00000309384|KLRC4 ENSG00000183542|ENST00000309384|KLRC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.306396484375 2 601.804217 1201.59388 0.59358 0.00035722 -0.10592 -6.3742E-05 0.48766 0.00029348 602.3057246231422 86.687 0.78886 80.511 80.017 80.806 -6.1757 117 42 4 0 0 0 0.46197 1 57143 57143 28.495 13.246 1 40311000 50959 9158 34482 35267 59241 59241 0.0011469994153685548 QVERLTFRCSF 11 Unmodified _QVERLTFRCSF_ 0 0 0 REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1 REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.8750610351562 3 462.571328 1384.69215 0.59141 0.00027357 -1.7675 -0.00081758 -1.1761 -0.00054401 462.5705026869487 22.414 0.20766 19.636 19.498 19.706 -2.7784 14 10 2 0 0 0 0.3021 1 12082 12082 6.6235 3.9922 1 2366400 + 50960 23662 34483 35268 59242 59242 0.015196049857422622 QVEVYKIQ 8 Unmodified _QVEVYKIQ_ 0 0 0 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 ENSG00000135968|ENST00000309863|GCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7824096679688 2 503.782025 1005.5495 -0.53367 -0.00026885 2.4921 0.0012555 1.9584 0.0009866 503.7826312090596 37.624 0.44515 37.353 37.039 37.485 -0.27133 25 18 2 0 0 0 0.48583 1 19756 19756 36.127 0 1 4347700 50961 4768 34484 35269 59243 59243 0.04694340586001999 QVFDNDISY 9 Unmodified _QVFDNDISY_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7492065429688 2 550.748379 1099.4822 0.37056 0.00020408 2.4471 0.0013477 2.8176 0.0015518 550.7488535188635 51.711 0.38636 51.711 51.5 51.886 0 61 17 5 0 0 0 0.031062 1 28589 28589 54.774 31.625 1 16463000 50962 8706 34485 35270 59244 59244 -0.06355734415592451 QVFDNDISY 9 Unmodified _QVFDNDISY_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7487182617188 2 550.748379 1099.4822 0.90456 0.00049819 -0.59748 -0.00032906 0.30709 0.00016913 550.7480494309627 60.15 0.27279 54.035 53.921 54.194 -6.1147 21 13 2 0 0 0 0.015445 1 38689 38689 68.081 47.627 1 24825000 50963 8706 34485 35270 59245 59245 -0.06355734415592451 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.1734008789062 3 373.173562 1116.49886 -0.38291 -0.00014289 0.73386 0.00027386 0.35094 0.00013096 373.17361801814855 21.826 0.47615 21.826 21.485 21.961 0 187 70 4 0 0 0 0.070838 2 11013 11013;11115 43.772 27.623 1 22287000 50964 9257 34486 35271 59246;59247 59246 -0.05473188738983481 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2572021484375 2 559.256705 1116.49886 -0.050084 -2.801E-05 0.045719 2.5569E-05 -0.0043641 -2.4407E-06 559.2568656502668 21.809 0.1932 21.809 21.707 21.901 0 51 30 2 0 0 0 0.06187 1 11031 11031 42.095 25.152 1 2285600 50965 9257 34486 35271 59248 59248 -0.05473188738983481 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.1737670898438 3 373.173562 1116.49886 0.81787 0.00030521 -0.18645 -6.9577E-05 0.63142 0.00023563 373.17363232007784 24.47 0.6762 21.643 21.196 21.872 -2.8273 125 37 5 0 0 0 0.038285 3 13252 13252;13259;13360 45.7 37.544 1 83437000 50966 9257 34486 35271 59249;59250;59251 59249 -0.05473188738983481 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2570190429688 2 559.256705 1116.49886 0.44023 0.0002462 0.81478 0.00045567 1.255 0.00070187 559.2570225848958 24.491 0.38425 21.663 21.469 21.853 -2.8273 37 21 3 0 0 0 0.0055767 2 13274 13274;13386 115.69 75.735 1 11612000 50967 9257 34486 35271 59252;59253 59252 -0.05473188738983481 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.173562 1116.49886 -0.22425 -8.3684E-05 -0.18378 -6.858E-05 -0.40803 -0.00015226 373.1733870151167 21.675 0.17531 21.698 21.609 21.785 0.022896 -0.017089 -0.00020463 NaN 38.176 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1235700 50968 9257 34486 35271 -0.05473188738983481 QVFEGHTHY 9 Unmodified _QVFEGHTHY_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2;ENST00000510181.5_1_3:139093277-139108392:-|nuORF ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 373.173562 1116.49886 0.10774 4.0206E-05 -0.50118 -0.00018703 -0.39344 -0.00014682 373.17328987350436 21.679 0.13769 21.693 21.621 21.758 0.013796 -0.022011 -0.00055997 NaN 38.176 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 959360 50969 9257 34486 35271 -0.05473188738983481 QVFQPNPL 8 Unmodified _QVFQPNPL_ 0 0 0 ENSG00000112761|ENST00000368666|CCN6;nc|ENSG00000112761|O95389-2|CCN6 ENSG00000112761|ENST00000368666|CCN6 ENSG00000112761|ENST00000368666|CCN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7566528320312 2 471.75581 941.497067 0.42261 0.00019937 0.16591 7.8269E-05 0.58852 0.00027764 471.75604853527744 63.147 0.4677 62.66 62.501 62.969 -0.48617 31 21 2 0 0 0 0.80143 1 34575 34575 5.7604 0 1 1202600 50970 2917 34487 35272 59254 59254 0.023978022430242163 QVGGHKLG 8 Unmodified _QVGGHKLG_ 0 0 0 REV__nc|ENSG00000182648|Q8NI28|RNF32-DT REV__nc|ENSG00000182648|Q8NI28|RNF32-DT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.228271484375 2 398.22722 794.439886 NaN NaN NaN NaN NaN NaN NaN 18.511 1 18.534 18.034 19.034 0.023106 0 0 0 0.97444 1 9286 9286 0.69038 0 1 + 50971 29838 34488 35273 59255 59255 0.03444379757343086 QVGPENLLY 9 Unmodified _QVGPENLLY_ 0 0 0 REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF REV__ENST00000472045.1_1_5:131819943-131820240:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7714233398438 2 516.771657 1031.52876 0.19176 9.9097E-05 -0.11695 -6.0438E-05 0.07481 3.8659E-05 516.7715264812324 62.039 0.40876 62.039 61.821 62.23 0 44 18 3 0 0 0 0.009483 1 34539 34539 81.89 3.1622 1 12757000 + 50972 19486 34489 35274 59256 59256 0.014257502063401262 QVHDDTPSE 9 Unmodified _QVHDDTPSE_ 0 0 0 REV__nc|ENSG00000166454|O43313-2|ATMIN REV__nc|ENSG00000166454|O43313-2|ATMIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2195434570312 2 514.219985 1026.42542 0.26216 0.00013481 -0.43294 -0.00022263 -0.17078 -8.7818E-05 514.2197834785364 17.374 0.49523 17.379 17.036 17.532 0.0050564 100 38 3 0 0 0 0.12424 1 8699 8699 30.637 0 1 5559800 + 50973 22124 34490 35275 59257 59257 -0.08673781972129291 QVHKFKKIE 9 Unmodified _QVHKFKKIE_ 0 0 0 REV__nc|ENSG00000153789|Q6ZTR7|CIBAR2 REV__nc|ENSG00000153789|Q6ZTR7|CIBAR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5533752441406 3 386.232752 1155.67643 0.18563 7.1697E-05 3.2412 0.0012519 3.4268 0.0013236 386.2341493354398 48.866 0.37422 48.822 48.674 49.049 -0.04369 22 18 2 0 0 0 0.21493 1 26386 26386 4.897 0.36815 1 2209700 + 50974 21183 34491 35276 59258 59258 0.10481686530988554 QVHNLLLTY 9 Unmodified _QVHNLLLTY_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8087158203125 2 550.808574 1099.60259 0.30888 0.00017013 -0.037769 -2.0804E-05 0.27111 0.00014933 550.8085365053433 58.41 0.36701 57.92 57.723 58.09 -0.49079 60 17 4 0 0 0 0.0090851 2 31807 31697;31807 85.357 56.87 1 18879000 50975 8000 34492 35277 59259;59260 59260 0.05677718368656315 QVHNLLLTY 9 Unmodified _QVHNLLLTY_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8091430664062 2 550.808574 1099.60259 0.80325 0.00044244 -0.98471 -0.00054239 -0.18147 -9.9954E-05 550.8080682794365 58.036 0.31477 57.97 57.815 58.13 -0.066036 45 15 4 0 0 0 0.0090851 2 31557 31557;31655 85.357 56.87 1 18402000 50976 8000 34492 35277 59261;59262 59261 0.05677718368656315 QVHNLLLTY 9 Unmodified _QVHNLLLTY_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8091430664062 2 550.808574 1099.60259 1.1144 0.00061382 -0.10789 -5.9427E-05 1.0065 0.0005544 550.8085103328823 63.724 0.64303 57.548 57.292 57.935 -6.1757 91 35 4 0 0 0 0.00856 2 41125 41125;41258 100.37 60.414 1 88558000 50977 8000 34492 35277 59263;59264 59263 0.05677718368656315 QVHPDTGISSK 11 Unmodified _QVHPDTGISSK_ 0 0 0 ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000234289|ENST00000599962|H2BC12L ENSG00000234289|ENST00000599962|H2BC12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5379028320312 3 390.20341 1167.5884 -0.63899 -0.00024934 0.54456 0.00021249 -0.094434 -3.6848E-05 390.20361838638644 16.182 0.19378 16.182 16.07 16.264 0 103 46 3 0 0 0 0.56863 1 7886 7886 12.929 5.827 1 2135200 50978 3808 34493 35278 59265 59265 0.011310211496947886 QVHPDTGISSK 11 Unmodified _QVHPDTGISSK_ 0 0 0 ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000234289|ENST00000599962|H2BC12L ENSG00000234289|ENST00000599962|H2BC12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2046203613281 3 390.20341 1167.5884 -0.54006 -0.00021073 0.68486 0.00026723 0.1448 5.65E-05 390.20358802292776 16.682 0.12453 16.683 16.64 16.764 0.0010548 60 37 2 0 0 0 0.65341 1 8261 8261 8.6273 5.784 1 900130 50979 3808 34493 35278 59266 59266 0.011310211496947886 QVHPDTGISSK 11 Unmodified _QVHPDTGISSK_ 0 0 0 ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000203814|ENST00000369167|H2BC18;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000276410|ENST00000615966|H2BC3;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000196890|ENST00000693095|H2BC26;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000203814|Q5QNW6-2|H2BC18;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000146047|ENST00000274764|H2BC1 ENSG00000234289|ENST00000599962|H2BC12L ENSG00000234289|ENST00000599962|H2BC12L MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2032775878906 3 390.20341 1167.5884 0.69633 0.00027171 -1.0795 -0.00042124 -0.38321 -0.00014953 390.2029926170135 17.295 0.15841 14.708 14.616 14.775 -2.5866 29 22 2 0 0 0 0.61122 1 9004 9004 10.768 3.1587 1 2093800 50980 3808 34493 35278 59267 59267 0.011310211496947886 QVHQCIPRPL 10 Unmodified _QVHQCIPRPL_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.8260498046875 2 595.826775 1189.639 NaN NaN NaN NaN NaN NaN NaN 15.894 1 15.88 15.38 16.38 -0.014067 0 0 0 1.0024 1 7821 7821 0.40072 0 1 + 50981 19845 34494 35279 59268 59268 0.05176271993741466 QVIGLVTAL 9 Unmodified _QVIGLVTAL_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 913.57275390625 1 913.571694 912.564418 0.31465 0.00028745 0.75048 0.00068561 1.0651 0.00097307 913.5725433960272 82.096 0.37538 81.6 81.392 81.767 -0.4952 36 14 3 0 0 0 0.0088174 2 44982 44888;44982 103.75 25.599 1 4629400 50982 4346 34495 35280 59269;59270 59270 0.10463832453979194 QVIGLVTAL 9 Unmodified _QVIGLVTAL_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2892150878906 2 457.289485 912.564418 0.54569 0.00024954 0.3825 0.00017491 0.92819 0.00042445 457.2896995674952 82.089 0.35033 81.593 81.392 81.742 -0.4952 26 13 3 0 0 0 0.06187 1 44941 44941 42.095 13.608 1 1753600 50983 4346 34495 35280 59271 59271 0.10463832453979194 QVIGLVTAL 9 Unmodified _QVIGLVTAL_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 913.5718383789062 1 913.571694 912.564418 0.56735 0.00051831 1.6473 0.0015049 2.2146 0.0020232 913.573417704161 89.981 0.51284 83.805 83.544 84.057 -6.1757 47 28 2 0 0 0 0.0082661 3 59546 59287;59405;59546 103.75 31.826 1 14322000 50984 4346 34495 35280 59272;59273;59274 59274 0.10463832453979194 QVIRTDRPCR 10 Unmodified _QVIRTDRPCR_ 0 0 0 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.33935546875 2 622.338038 1242.66152 NaN NaN NaN NaN NaN NaN NaN 89.489 1 88.987 88.487 89.487 -0.50171 0 0 0 0.99514 1 48927 48927 1.1933 0 1 + 50985 23216 34496 35281 59275 59275 0.04989871391308043 QVIRTDRPCR 10 Unmodified _QVIRTDRPCR_ 0 0 0 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3377685546875 2 622.338038 1242.66152 NaN NaN NaN NaN NaN NaN NaN 90.368 1 89.866 89.366 90.366 -0.50171 0 0 0 0.99514 1 49397 49397 1.1933 0.23107 1 + 50986 23216 34496 35281 59276 59276 0.04989871391308043 QVIRTDRPCR 10 Unmodified _QVIRTDRPCR_ 0 0 0 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 REV__nc|ENSG00000181631|Q9BPV8-2|P2RY13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3387451171875 2 622.338038 1242.66152 0.74318 0.00046251 0.23529 0.00014643 0.97847 0.00060894 622.338116807256 90.329 0.44978 90.371 90.131 90.581 0.042183 28 15 3 0 0 0 0.64628 1 50257 50257 8.7454 2.0222 1 6462600 + 50987 23216 34496 35281 59277 59277 0.04989871391308043 QVKFRRRREG 10 Unmodified _QVKFRRRREG_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 666.3911743164062 2 666.391993 1330.76943 NaN NaN NaN NaN NaN NaN NaN 14.794 1 14.8 14.3 15.3 0.0057774 0 0 0 1.0024 1 7350 7350 0.40072 0.093686 1 50988 3636 34497 35282 59278 59278 0.11728004036922357 QVKFYMRF 8 Unmodified _QVKFYMRF_ 0 0 0 REV__ENST00000485985.1_1_7:156626414-156629563:-|nuORF REV__ENST00000485985.1_1_7:156626414-156629563:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.286865234375 2 559.794412 1117.57427 1.0428 0.00058378 -1.6685 -0.00093399 -0.62562 -0.00035022 559.7935567271702 42.603 0.27381 42.603 42.445 42.718 0 17 13 2 0 0 0 8.7369 1 23054 23054 13.508 0 1 3036000 + 50989 27790 34498 35283 59279 59279 0.020186971877137694 QVKLNKLAF 9 Unmodified _QVKLNKLAF_ 0 0 0 ENST00000563305.1_1_16:67472433-67472676:-|nuORF ENST00000563305.1_1_16:67472433-67472676:-|nuORF ENST00000563305.1_1_16:67472433-67472676:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.273681640625 2 530.829309 1059.64407 0.23967 0.00012722 0.074585 3.9592E-05 0.31425 0.00016681 530.8292362040863 75.159 0.59559 75.205 74.94 75.535 0.045959 49 28 2 0 0 0 0.19613 1 41375 41375 1.8442 0 1 7673800 50990 15359 34499 35284 59280 59280 0.11662899127986748 QVKSGCVLHTY 11 Unmodified _QVKSGCVLHTY_ 0 0 0 REV__ENST00000514612.5_1_3:134197273-134197324:-|nuORF REV__ENST00000514612.5_1_3:134197273-134197324:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.213134765625 3 412.213141 1233.61759 0.70163 0.00028922 -0.16213 -6.6833E-05 0.5395 0.00022239 412.21318116414045 27.005 0.32637 23.968 23.796 24.122 -3.0365 18 16 2 0 0 0 0.65706 1 14954 14954 8.2864 1.2493 1 8122900 + 50991 28197 34500 35285 59281 59281 0.010128421743502258 QVKSGCVLHTY 11 Unmodified _QVKSGCVLHTY_ 0 0 0 REV__ENST00000514612.5_1_3:134197273-134197324:-|nuORF REV__ENST00000514612.5_1_3:134197273-134197324:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 412.213141 1233.61759 -0.4303 -0.00017738 0.77407 0.00031908 0.34377 0.00014171 412.2133904046282 24.116 0.10102 24.116 24.037 24.138 0 0.07386 0.00081778 NaN 8.2864 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 245340 + 50992 28197 34500 35285 0.010128421743502258 QVKTPKTVFFE 11 Unmodified _QVKTPKTVFFE_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.9160461425781 3 441.915089 1322.72344 1.1575 0.00051153 1.4516 0.00064149 2.6092 0.001153 441.91556551783214 70.611 0.73089 70.647 70.312 71.043 0.035507 50 33 2 0 0 0 0.73992 1 38874 38874 0.50596 0.051438 1 1294500 50993 601 34501 35286 59282 59282 0.07498501291456705 QVKVSPLLP 9 Unmodified _QVKVSPLLP_ 0 0 0 REV__ENSG00000141867|ENST00000679869|BRD4 REV__ENSG00000141867|ENST00000679869|BRD4 MSMS AL20221201_MKP_PDAC_01 4 490.8109741210938 2 490.810585 979.606617 NaN NaN NaN NaN NaN NaN NaN 106.17 1 99.997 99.497 100.5 -6.1757 0 0 0 0.85798 1 71084 71084 0.52476 0 1 + 50994 20553 34502 35287 59283 59283 0.11599807862364742 QVLDLRDDEF 10 Unmodified _QVLDLRDDEF_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3054809570312 2 625.306592 1248.59863 0.3023 0.00018903 -0.54396 -0.00034014 -0.24166 -0.00015111 625.3063506059176 58.499 0.23977 58.499 58.366 58.606 0 21 9 3 0 0 0 0.28276 1 32569 32569 28.495 11.552 1 3376500 50995 10141 34503 35288 59284 59284 -0.01572415915734382 QVLEEEKNFLL 11 Unmodified _QVLEEEKNFLL_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 681.3689575195312 2 681.369192 1360.72383 NaN NaN NaN NaN NaN NaN NaN 65.947 1 65.947 65.447 66.447 0 0 0 0 0.81193 1 36782 36782 11.495 5.7629 1 50996 10310 34504 35289 59285 59285 0.05789876220660517 QVLEPQLTY 9 Unmodified _QVLEPQLTY_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7939453125 2 545.792589 1089.57063 0.27487 0.00015002 0.18414 0.0001005 0.45901 0.00025052 545.7926457291164 58.561 0.38189 58.561 58.366 58.748 0 47 15 4 0 0 0 0.033587 1 32577 32577 68.081 22.06 1 11746000 50997 8942 34505 35290 59286 59286 0.029423058948623293 QVLFTPATQA 10 Unmodified _QVLFTPATQA_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2943725585938 2 538.292756 1074.57096 NaN NaN NaN NaN NaN NaN NaN 50.855 1 50.801 50.301 51.301 -0.053871 0 0 0 0.80141 1 27511 27511 12.241 1.4167 1 50998 4011 34506 35291 59287 59287 0.036657256147236694 QVLGQAAH 8 Unmodified _QVLGQAAH_ 0 0 0 REV__ENSG00000115339|ENST00000392701|GALNT3 REV__ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.440673828125 1 823.442077 822.434801 1.4442 0.0011892 -4.193 -0.0034527 -2.7488 -0.0022635 823.4384107541352 100.04 0.12025 93.862 93.804 93.924 -6.1757 11 7 2 0 0 0 0.61462 1 66808 66808 24.674 0.46393 1 14627000 + 50999 18972 34507 35292 59288 59288 0.016480758946954666 QVLGSLVHV 9 Unmodified _QVLGSLVHV_ 0 0 0 ENST00000566359.1_1_16:66969484-66972145:+|nuORF;nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2 ENST00000566359.1_1_16:66969484-66972145:+|nuORF ENST00000566359.1_1_16:66969484-66972145:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2848510742188 2 476.284734 950.554916 0.54569 0.0002599 -0.3005 -0.00014313 0.24519 0.00011678 476.28461291037195 57.114 0.46891 56.628 56.479 56.948 -0.48554 34 21 2 0 0 0 0.2001 1 31123 31123 23.148 6.2061 1 3235400 51000 8262 34508 35293 59289 59289 0.07766064168458797 QVLNQKRLSL 10 Unmodified _QVLNQKRLSL_ 0 0 0 ENSG00000133111|ENST00000255476|RFXAP ENSG00000133111|ENST00000255476|RFXAP ENSG00000133111|ENST00000255476|RFXAP MSMS AL20221201_MKP_PDAC_01 4 599.8698120117188 2 599.866954 1197.71936 NaN NaN NaN NaN NaN NaN NaN 106.28 1 100.1 99.603 100.6 -6.1757 0 0 0 0.9997 1 71147 71147 0.40072 0 1 51001 4489 34509 35294 59290 59290 0.12840456588423876 QVLRAINQ 8 Unmodified _QVLRAINQ_ 0 0 0 nc|ENSG00000103313|O15553-3|MEFV;nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV nc|ENSG00000103313|O15553-3|MEFV nc|ENSG00000103313|O15553-3|MEFV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2811279296875 2 471.279983 940.545414 1.2854 0.00060578 -0.63303 -0.00029834 0.65236 0.00030744 471.2796878073514 81.379 0.71306 81.439 81.09 81.803 0.059929 41 27 2 0 0 0 0.80992 1 45027 45027 0.69038 0 1 2627400 51002 2125 34510 35295 59291 59291 0.07276295882934392 QVLTMEPY 8 Unmodified _QVLTMEPY_ 0 0 0 nc|ENSG00000164663|Q70CQ1-2|USP49;ENSG00000164663|ENST00000682992|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 nc|ENSG00000164663|Q70CQ1-2|USP49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7416076660156 2 490.741511 979.468469 0.90753 0.00044536 -1.6797 -0.00082431 -0.7722 -0.00037895 490.74059644128835 81.669 0.53363 81.174 80.728 81.262 -0.4952 34 22 2 0 0 0 0.74163 1 44737 44737 13.508 4.1604 1 707840 51003 7225 34511 35296 59292 59292 -0.022086834484184692 QVLWFFLM 8 Unmodified _QVLWFFLM_ 0 0 0 REV__ENST00000423725.5_1_2:207003318-207006755:-|nuORF REV__ENST00000423725.5_1_2:207003318-207006755:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7866821289062 2 542.288431 1082.56231 0.51325 0.00027833 -1.713 -0.00092892 -1.1997 -0.00065059 542.7889526956976 46.975 1.1802 41.895 41.393 42.573 -5.0805 286 140 5 0 0 0 0.50586 1 28883 28883 34.187 8.788 1 171840000 + 51004 26872 34512 35297 59293 59293 0.024330804445071408 QVMRWVPA 8 Unmodified _QVMRWVPA_ 0 0 0 REV__ENST00000340736.10_1_19:14274115-14281507:-|nuORF REV__ENST00000340736.10_1_19:14274115-14281507:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7669372558594 2 493.765655 985.516756 1.1214 0.0005537 -0.51583 -0.0002547 0.60556 0.000299 493.7655517387377 47.224 0.39156 47.191 47.069 47.46 -0.033417 27 18 2 0 0 0 0.79669 1 25430 25430 8.5933 1.304 1 3904200 + 51005 25697 34513 35298 59294 59294 0.023418549821485612 QVNFSPPEFIF 11 Unmodified _QVNFSPPEFIF_ 0 0 0 ENST00000392650.7_1_17:71334510-71334729:-|nuORF ENST00000392650.7_1_17:71334510-71334729:-|nuORF ENST00000392650.7_1_17:71334510-71334729:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2259826660156 3 442.223923 1323.64994 NaN NaN NaN NaN NaN NaN NaN 57.555 1 57.555 57.055 58.055 0 0 0 0 0.82644 1 32031 32031 8.7518 0 1 51006 12678 34514 35299 59295 59295 0.0010595284900318802 QVNPVLLTL 9 Unmodified _QVNPVLLTL_ 0 0 0 nc|ENSG00000085185|Q5H9F3-4|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.8079223632812 2 498.808042 995.601532 0.36338 0.00018126 0.015665 7.8138E-06 0.37904 0.00018907 498.8079018912918 86.42 0.25291 85.916 85.791 86.044 -0.50318 16 10 2 0 0 0 0.41742 1 47296 47296 11.64 1.5664 1 350100 51007 1402 34515 35300 59296 59296 0.1035550399976728 QVPDVISSI 9 Unmodified _QVPDVISSI_ 0 0 0 nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 nc|ENSG00000136111|O60343-3|TBC1D4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2665710449219 2 479.266207 956.517862 1.0819 0.00051851 -1.9059 -0.00091342 -0.82398 -0.00039491 479.26499015163756 74.771 1.032 68.595 68.268 69.3 -6.1757 105 55 3 0 0 0 0.06294 1 48889 48889 41.84 0 1 59744000 51008 4789 34516 35301 59297 59297 0.03786347832055981 QVPEMEVDKRC 11 Unmodified _QVPEMEVDKRC_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.3154296875 2 667.31558 1332.61661 NaN NaN NaN NaN NaN NaN NaN 48.298 1 47.927 47.427 48.427 -0.37172 0 0 0 0.93767 1 25917 25917 4.1895 0.59301 1 + 51009 17428 34517 35302 59298 59298 -0.03639740256880941 QVPGAQLPVF 10 Unmodified _QVPGAQLPVF_ 0 0 0 REV__ENSG00000095951|ENST00000379388|HIVEP1 REV__ENSG00000095951|ENST00000379388|HIVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3443603515625 2 528.297842 1054.58113 0.30482 0.00016104 0.69586 0.00036762 1.0007 0.00052866 528.2980720982027 60.656 0.21219 60.613 60.533 60.745 -0.04351 25 10 3 0 0 0 0.22327 1 33063 33063 13.906 0 1 11688000 + 51010 17953 34518 35303 59299 59299 0.05602333339948018 QVPHEDSS 8 Unmodified _QVPHEDSS_ 0 0 0 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 REV__nc|ENSG00000181827|Q2KHR2-1|RFX7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.6985168457031 2 449.698689 897.382825 NaN NaN NaN NaN NaN NaN NaN 15.549 1 15.555 15.055 16.055 0.0057774 0 0 0 0.97444 1 7753 7753 5.2307 0 1 + 51011 23226 34519 35304 59300 59300 -0.06997132309709286 QVPNESFFNFF 11 Unmodified _QVPNESFFNFF_ 0 0 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 688.320556640625 2 688.319502 1374.62445 1.3389 0.00092162 -0.61533 -0.00042355 0.72362 0.00049808 688.319233387784 100.49 0.13553 100.45 100.37 100.51 -0.04216 12 4 4 0 0 0 0.0024728 1 55832 55832 79.596 57.85 1 6449000 51012 10370 34520 35305 59301 59301 -0.047875216734382775 QVPNESFFNFF 11 Unmodified _QVPNESFFNFF_ 0 0 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.319091796875 2 688.319502 1374.62445 1.0345 0.00071206 -0.75741 -0.00052134 0.27709 0.00019073 688.318355972684 101.23 0.13255 95.052 94.974 95.107 -6.1757 20 8 3 0 0 0 4.5949E-15 1 67878 67878 136.39 98.217 1 51041000 51013 10370 34520 35305 59302 59302 -0.047875216734382775 QVPNGVLQF 9 Unmodified _QVPNGVLQF_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2745666503906 2 501.274367 1000.53418 0.31634 0.00015857 1.1163 0.00055956 1.4326 0.00071813 501.2748327346977 67.798 0.3562 67.315 67.119 67.475 -0.48219 39 15 3 0 0 0 0.06187 1 37022 37022 42.095 6.0504 1 2310100 + 51014 21984 34521 35306 59303 59303 0.03393473788810297 QVPNGVLQF 9 Unmodified _QVPNGVLQF_ 0 0 0 REV__ENSG00000165124|ENST00000374469|SVEP1 REV__ENSG00000165124|ENST00000374469|SVEP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.274367 1000.53418 0.31634 0.00015857 1.1163 0.00055956 1.4326 0.00071813 501.2748327346977 67.798 0.3562 67.315 67.119 67.475 -0.48219 0 0 NaN 42.095 39 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2310100 + 51015 21984 34521 35306 0.03393473788810297 QVPVMFDYFH 10 Unmodified _QVPVMFDYFH_ 0 0 0 nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B;nc|ENSG00000147724|Q49AJ0-3|FAM135B nc|ENSG00000147724|Q49AJ0-4|FAM135B nc|ENSG00000147724|Q49AJ0-4|FAM135B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.7982177734375 2 641.799891 1281.58523 0.076593 4.9158E-05 -2.8765 -0.0018462 -2.7999 -0.001797 641.7980535227299 61.287 0.21775 61.287 61.193 61.411 0 22 9 3 0 0 0 0.71123 1 34168 34168 1.6526 0.32309 1 476170 51016 5880 34522 35307 59304 59304 -0.04429945228662291 QVQFLFELF 9 Unmodified _QVQFLFELF_ 0 0 0 REV__ENSG00000100739|ENST00000216629|BDKRB1 REV__ENSG00000100739|ENST00000216629|BDKRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8782043457031 3 390.877975 1169.6121 0.24454 9.5584E-05 -1.1239 -0.00043932 -0.8794 -0.00034374 390.87764791814334 53.004 0.1978 52.941 52.804 53.002 -0.063423 21 9 3 0 0 0 0.58865 1 28720 28720 1.0715 0 1 2367000 + 51017 18105 34523 35308 59305 59305 0.03407486654191416 QVQHLSYNY 9 Unmodified _QVQHLSYNY_ 0 0 0 nc|ENSG00000184716|A6NH21|SERINC4;nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF nc|ENSG00000184716|A6NH21|SERINC4 nc|ENSG00000184716|A6NH21|SERINC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2763061523438 2 576.277638 1150.54072 NaN NaN NaN NaN NaN NaN NaN 77.655 1 77.655 77.155 78.155 0 0 0 0 0.82396 1 43171 43171 4.756 0 1 51018 16457 34524 35309 59306 59306 -0.028526330504973885 QVQHREKYLP 10 Unmodified _QVQHREKYLP_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.3558349609375 2 649.354211 1296.69387 -0.02799 -1.8176E-05 3.1215 0.002027 3.0935 0.0020088 649.3560445739631 93.123 0.21463 93.123 93.081 93.296 0 15 12 2 0 0 0 0.71535 1 51506 51506 1.1933 0.735 1 283900 + 51019 22779 34525 35310 59307 59307 0.0573898206598642 QVQHREKYLP 10 Unmodified _QVQHREKYLP_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 649.354211 1296.69387 -0.02799 -1.8176E-05 3.1215 0.002027 3.0935 0.0020088 649.3560445739631 93.123 0.21463 93.123 93.081 93.296 0 0.12702 0.0013106 NaN 1.1933 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 283900 + 51020 22779 34525 35310 0.0573898206598642 QVQHREKYLP 10 Unmodified _QVQHREKYLP_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 649.354211 1296.69387 0.23232 0.00015086 0.94802 0.0006156 1.1803 0.00076646 649.3546305328748 99.045 0.053513 92.869 92.824 92.878 -6.1757 -0.12702 -0.0015121 NaN 1.1933 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 12962000 + 51021 22779 34525 35310 0.0573898206598642 QVQMKLRF 8 Unmodified _QVQMKLRF_ 0 0 0 ENST00000296468.7_1_4:128854167-128859985:-|nuORF ENST00000296468.7_1_4:128854167-128859985:-|nuORF ENST00000296468.7_1_4:128854167-128859985:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5357055664062 3 350.535667 1048.58517 -0.78533 -0.00027529 1.2965 0.00045447 0.51118 0.00017919 350.53612181417685 32.094 0.22432 32.094 31.94 32.164 0 14 10 2 0 0 0 0.78849 1 16729 16729 6.7232 0 1 1167400 51022 11509 34526 35311 59308 59308 0.06282099562008625 QVQPFFDNIF 10 Unmodified _QVQPFFDNIF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3140258789062 2 627.811313 1253.60807 2.3317 0.0014638 -0.55763 -0.00035009 1.774 0.0011138 627.8109112688717 95.793 0.40556 95.798 95.599 96.004 0.004158 44 14 4 0 0 0 0.35903 2 53180 53180;53277 24.021 8.7721 1 11893000 51023 10153 34527 35312 59309;59310 59309 -0.00858602839548439 QVQPFFDNIF 10 Unmodified _QVQPFFDNIF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.8112182617188 2 627.811313 1253.60807 1.1118 0.000698 0.018545 1.1643E-05 1.1303 0.00070965 627.8117082399726 100.16 0.18803 93.988 93.884 94.072 -6.1757 18 11 2 0 0 0 0.10424 1 66894 66894 45.7 7.5484 1 24238000 51024 10153 34527 35312 59311 59311 -0.00858602839548439 QVQYLLFE 8 Unmodified _QVQYLLFE_ 0 0 0 REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.27685546875 2 520.276575 1038.5386 0.37602 0.00019564 0.31834 0.00016563 0.69437 0.00036126 520.2767443603093 83.613 0.44045 83.613 83.399 83.84 0 73 23 4 0 0 0 0.6895 1 46411 46411 18.135 0 1 7195600 + 51025 26728 34528 35313 59312 59312 0.020869382117098212 QVQYLLFE 8 Unmodified _QVQYLLFE_ 0 0 0 REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.276611328125 2 520.276575 1038.5386 0.42557 0.00022141 -0.38347 -0.00019951 0.042098 2.1902E-05 520.2762814179501 84.081 0.55258 83.581 83.288 83.841 -0.49961 99 23 5 0 0 0 0.5284 1 46019 46019 32.117 0 1 88885000 + 51026 26728 34528 35313 59313 59313 0.020869382117098212 QVQYLLFE 8 Unmodified _QVQYLLFE_ 0 0 0 REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF REV__ENST00000412976.1_1_10:65930205-65930388:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2772827148438 2 520.276575 1038.5386 0.93719 0.0004876 0.51747 0.00026923 1.4547 0.00075683 520.2768319309384 91.321 1.3163 85.145 84.406 85.723 -6.1757 166 54 4 0 0 0 0.46494 1 60290 60290 38.151 0 1 283730000 + 51027 26728 34528 35313 59314 59314 0.020869382117098212 QVRDEYRQDY 10 Unmodified _QVRDEYRQDY_ 0 0 0 nc|ENSG00000114503|P52298-2|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;nc|ENSG00000114503|P52298-3|NCBP2 nc|ENSG00000114503|P52298-2|NCBP2 nc|ENSG00000114503|P52298-2|NCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.8812561035156 3 457.881107 1370.62149 -0.035453 -1.6233E-05 0.34692 0.00015885 0.31146 0.00014261 457.8811646081542 19.375 0.16957 19.375 19.282 19.452 0 15 10 2 0 0 0 0.63089 1 9675 9675 9.544 0 1 612470 51028 3043 34529 35314 59315 59315 -0.04899396798236921 QVRKAVDAL 9 Unmodified _QVRKAVDAL_ 0 0 0 ENSG00000171490|ENST00000571133|RSL1D1;ENST00000574287.1_1_16:11941440-11945369:-|nuORF ENSG00000171490|ENST00000571133|RSL1D1 ENSG00000171490|ENST00000571133|RSL1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3013305664062 2 500.300916 998.587279 0.31944 0.00015982 -1.296 -0.00064841 -0.97659 -0.00048859 500.30023840075495 23.664 0.24131 20.837 20.741 20.983 -2.8273 25 14 2 0 0 0 0.022193 1 12855 12855 61.357 21.4 1 5915300 51029 8108 34530 35315 59316 59316 0.08792851571456595 QVRRFHVQL 9 Unmodified _QVRRFHVQL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8995361328125 3 394.899996 1181.67816 -0.35345 -0.00013958 0.13286 5.2468E-05 -0.22059 -8.7109E-05 394.8999506945005 31.513 0.23729 31.543 31.411 31.648 0.030106 27 10 4 0 0 0 0.036857 1 16487 16487 51.63 28.855 1 15472000 51030 4412 34531 35316 59317 59317 0.09458740339596261 QVRRFHVQL 9 Unmodified _QVRRFHVQL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9006042480469 3 394.899996 1181.67816 1.009 0.00039846 0.17041 6.7293E-05 1.1794 0.00046576 394.90003943036174 77.663 0.60899 71.487 71.185 71.794 -6.1757 40 34 2 0 0 0 0.27545 1 50779 50779 18.373 3.1246 1 12402000 51031 4412 34531 35316 59318 59318 0.09458740339596261 QVRRRHRRRFL 11 Unmodified _QVRRRHRRRFL_ 0 0 0 REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 790.4862060546875 2 790.485082 1578.95561 NaN NaN NaN NaN NaN NaN NaN 70.8 1 70.8 70.3 71.3 0 0 0 0 0.9435 1 39445 39445 0 0 1 + 51032 28883 34532 35317 59319 59319 0.189292459960825 QVRRRPPVLFR 11 Unmodified _QVRRRPPVLFR_ 0 0 0 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.9457397460938 2 712.441486 1422.86842 1.3317 0.00094879 -0.16413 -0.00011693 1.1676 0.00083185 712.9432365604666 105.5 0.16145 99.329 99.293 99.455 -6.1757 22 12 3 0 0 0 0.74203 1 70695 70695 0.30703 0 1 8584200 51033 10701 34533 35318 59320 59320 0.1739002700180663 QVSALRQEL 9 Unmodified _QVSALRQEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2213745117188 2 522.29583 1042.57711 0.91492 0.00047786 -0.50821 -0.00026544 0.4067 0.00021242 522.2954375804575 36.621 0.3053 36.621 36.448 36.754 0 38 14 4 0 0 0 0.19111 1 19462 19462 11.495 2.7493 1 13825000 51034 16188 34534 35319 59321 59321 0.057522438462456194 QVSALRQEL 9 Unmodified _QVSALRQEL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2957153320312 2 522.29583 1042.57711 0.34366 0.00017949 -1.7416 -0.00090962 -1.3979 -0.00073012 522.2957479625957 41.311 0.43741 36.703 36.499 36.936 -4.6079 55 28 3 0 0 0 0.0039711 2 24853 24709;24853 121.53 52.429 1 35282000 51035 16188 34534 35319 59322;59323 59323 0.057522438462456194 QVSATLPHGG 10 Unmodified _QVSATLPHGG_ 0 0 0 ENST00000564189.1_2_16:31086034-31087758:+|nuORF;ENST00000300850.5_1_16:31085796-31087758:+|nuORF ENST00000564189.1_2_16:31086034-31087758:+|nuORF ENST00000564189.1_2_16:31086034-31087758:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7542419433594 2 483.753798 965.493044 0.64422 0.00031164 -0.052611 -2.5451E-05 0.59161 0.00028619 483.75405039354064 44.709 0.22434 39.857 39.782 40.007 -4.852 27 18 2 0 0 0 0.23548 1 27346 27346 31.268 5.869 1 11974000 51036 11556 34535 35320 59324 59324 0.008917127493418775 QVSLQPLPEY 10 Unmodified _QVSLQPLPEY_ 0 0 0 REV__ENSG00000186806|ENST00000335624|VSIG10L REV__ENSG00000186806|ENST00000335624|VSIG10L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5762939453125 3 391.876523 1172.60774 -0.35092 -0.00013752 2.0957 0.00082124 1.7447 0.00068373 391.87728392464857 36.574 0.20822 36.595 36.453 36.661 0.021545 14 9 2 0 0 0 0.23707 1 19381 19381 7.4771 2.0744 1 4371600 + 51037 23597 34536 35321 59325 59325 0.0283397744060494 QVSPEIFQF 9 Unmodified _QVSPEIFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7799682617188 2 547.779482 1093.54441 0.4375 0.00023965 3.6658 0.002008 4.1033 0.0022477 547.7797464751982 83.725 0.50629 83.228 82.914 83.421 -0.49751 58 20 4 0 0 0 0.1773 1 45795 45795 25.399 9.5521 1 2970000 51038 8296;16388 34537 35322 59326 59326 0.0013803672338781325 QVTESFRER 9 Unmodified _QVTESFRER_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2;nc|ENSG00000099954|Q9BXF3-2|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.290283203125 2 576.293819 1150.57309 0.12998 7.4909E-05 -3.0049 -0.0017317 -2.8749 -0.0016568 576.2920479381772 69.406 0.55373 68.927 68.605 69.159 -0.47903 38 23 2 0 0 0 0.30202 1 37952 37952 17.113 0.1706 1 2282300 51039 1726 34538 35323 59327 59327 0.003821543525191373 QVTSLITYG 9 Unmodified _QVTSLITYG_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.526123046875 1 981.525138 980.517862 0.30058 0.00029503 -0.026375 -2.5888E-05 0.27421 0.00026914 981.5249814068043 94.002 0.36581 93.581 93.413 93.778 -0.42044 29 18 2 0 0 0 0.078314 1 51322 51322 38.176 2.0485 1 1597800 51040 10367 34539 35324 59328 59328 0.026823478320466165 QVVDEIFNEY 10 Unmodified _QVVDEIFNEY_ 0 0 0 RTCB|p.M246Wfs*11|1|0.06|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant;ENSG00000100220|ENST00000216038|RTCB RTCB|p.M246Wfs*11|1|0.06|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant RTCB|p.M246Wfs*11|1|0.06|ENSG00000100220|chr22:32398019-32398019|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2960205078125 2 628.295693 1254.57683 0.16109 0.00010121 -1.2378 -0.00077773 -1.0767 -0.00067651 628.2948486387533 69.775 0.25626 69.775 69.654 69.91 0 22 11 3 0 0 0 0.35903 1 38836 38836 24.021 1.2843 1 1636200 51041 1771 34540 35325 59329 59329 -0.04027220664261222 QVVKETPEY 9 Unmodified _QVVKETPEY_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7822875976562 2 546.782222 1091.54989 -0.27943 -0.00015279 2.605 0.0014244 2.3256 0.0012716 546.7832094594498 25.741 0.12484 25.741 25.674 25.799 0 8 5 2 0 0 0 0.49766 1 13219 13219 7.2892 0 1 718440 51042 6408 34541 35326 59330 59330 0.007777155151643456 QVVLFLPEI 9 Unmodified _QVVLFLPEI_ 0 0 0 ENST00000570455.1_1_17:6538276-6538423:-|nuORF ENST00000570455.1_1_17:6538276-6538423:-|nuORF ENST00000570455.1_1_17:6538276-6538423:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3199462890625 2 529.318243 1056.62193 NaN NaN NaN NaN NaN NaN NaN 87.58 1 87.075 86.575 87.575 -0.50423 0 0 0 0.82739 1 47906 47906 4.3292 0.38484 1 51043 15478 34542 35327 59331 59331 0.0958867465953972 QVVMQKVSVCI 11 Unmodified _QVVMQKVSVCI_ 0 0 0 nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8949279785156 3 411.894643 1232.6621 1.3673 0.00056317 -0.019708 -8.1177E-06 1.3476 0.00055505 411.894477381582 21.177 0.45741 18.484 18.167 18.624 -2.693 66 25 4 0 0 0 0.67037 1 11346 11346 7.0371 7.0371 1 40810000 51044 4985 34543 35328 59332 59332 0.0550752999620272 QVVRFHGGAL 10 Unmodified _QVVRFHGGAL_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8730773925781 3 361.873447 1082.59851 -0.306 -0.00011073 2.7516 0.00099573 2.4456 0.00088499 361.8742739217055 31.572 0.27426 31.602 31.478 31.753 0.030106 26 12 3 0 0 0 0.63399 1 16541 16541 5.4027 0 1 2582900 51045 9910 34544 35329 59333 59333 0.06051673665592716 QVVRLLRHKA 10 Unmodified _QVVRLLRHKA_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3922729492188 2 610.390931 1218.76731 1.4903 0.00090967 0.036663 2.2379E-05 1.527 0.00093205 610.3906388971533 105.08 0.26503 98.908 98.76 99.025 -6.1757 148 37 6 0 0 0 0.72247 1 70300 70300 0.40072 0.050084 1 11944000000 + 51046 21247 34545 35330 59334 59334 0.16667575299129567 QVVRLLRHKA 10 Unmodified _QVVRLLRHKA_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2641906738281 3 407.263046 1218.76731 1.6964 0.00069089 0.3541 0.00014421 2.0505 0.0008351 407.2632309750274 105.09 0.14322 98.91 98.828 98.971 -6.1757 46 20 3 0 0 0 0.72247 1 70343 70343 0.13989 0 1 136200000 + 51047 21247 34545 35330 59335 59335 0.16667575299129567 QVVWLPEPG 9 Unmodified _QVVWLPEPG_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7755126953125 2 512.776742 1023.53893 NaN NaN NaN NaN NaN NaN NaN 32.26 1 32.131 31.631 32.631 -0.12915 0 0 0 0.7453 1 16792 16792 7.9102 3.1541 1 51048 3425 34546 35331 59336 59336 0.028103579315711613 QVVYIKLISTK 11 Unmodified _QVVYIKLISTK_ 0 0 0 REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.4035034179688 2 646.402838 1290.79112 1.4664 0.00094786 -0.45038 -0.00029113 1.016 0.00065673 646.4024284532379 105.71 0.54469 99.531 99.359 99.904 -6.1757 144 61 3 0 0 0 0.74203 1 70872 70872 0.30703 0 1 15970000 + 51049 26065 34547 35332 59337 59337 0.1573595122226834 QVWSTFNAIF 10 Unmodified _QVWSTFNAIF_ 0 0 0 REV__AluSz_dup96270|chr19:48707462-48707763:+|1.001394656643946|0.3683053515596958|1.44|177.0|15|2|anti-sense REV__AluSz_dup96270|chr19:48707462-48707763:+|1.001394656643946|0.3683053515596958|1.44|177.0|15|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8086547851562 2 606.806031 1211.59751 1.262 0.00076578 -0.19324 -0.00011726 1.0687 0.00064852 606.806092826853 91.827 0.30261 91.857 91.72 92.022 0.030197 17 10 2 0 0 0 0.47869 1 51089 51089 20.454 5.6154 1 3061500 + 51050 16720 34548 35333 59338 59338 0.00017414506010027253 QVYDEKFV 8 Unmodified _QVYDEKFV_ 0 0 0 REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2584838867188 2 514.258382 1026.50221 0.49163 0.00025282 0.43698 0.00022472 0.92861 0.00047755 514.2592519195538 74.272 0.19922 74.272 74.166 74.365 0 14 8 2 0 0 0 0.80624 1 41369 41369 2.8892 0 1 368960 + 51051 18719 34549 35334 59339 59339 -0.009979386850091032 QVYDEKFV 8 Unmodified _QVYDEKFV_ 0 0 0 REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant REV__EXPH5|p.Q1186Pfs*5|1|0.16|ENSG00000110723|chr11:108511950-108511951|-/G|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.258382 1026.50221 0.49163 0.00025282 0.43698 0.00022472 0.92861 0.00047755 514.2592519195538 74.272 0.19922 74.272 74.166 74.365 0 0 0 NaN 2.8892 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 368960 + 51052 18719 34549 35334 -0.009979386850091032 QVYGEPMASKF 11 Unmodified _QVYGEPMASKF_ 0 0 0 REV__CON__Q9U6Y5 REV__CON__Q9U6Y5 MSMS AL20221201_MKP_PDAC_01 4 419.5401000976562 3 419.537513 1255.59071 NaN NaN NaN NaN NaN NaN NaN 35.859 1 31.666 31.166 32.166 -4.1928 0 0 0 0.93224 1 20869 20869 2.6312 0 1 + + 51053 16892 34550 35335 59340 59340 -0.02686266436853657 QVYTGTLYR 9 Unmodified _QVYTGTLYR_ 0 0 0 REV__nc|ENSG00000157985|Q9UPQ3-3|AGAP1 REV__nc|ENSG00000157985|Q9UPQ3-3|AGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8273315429688 2 550.790381 1099.56621 0.0061843 3.4063E-06 4.1791 0.0023018 4.1853 0.0023052 550.7929683345316 51.271 0.098038 50.857 50.798 50.896 -0.41351 7 4 2 0 0 0 0.19496 1 27601 27601 13.906 0 1 682100 + 51054 21408 34551 35336 59341 59341 0.02040841471944077 QWAPPSPT 8 Unmodified _QWAPPSPT_ 0 0 0 REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF REV__ENST00000598397.1_1_19:49850519-49858643:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2181701660156 2 442.21906 882.423567 NaN NaN NaN NaN NaN NaN NaN 76.848 1 76.369 75.869 76.869 -0.47945 0 0 0 0.97444 1 42075 42075 0.69038 0 1 + 51055 17547 34552 35337 59342 59342 -0.022347461994399964 QWAQDGPVYGH 11 Unmodified _QWAQDGPVYGH_ 0 0 0 REV__ENSG00000115568|ENST00000411696|ZNF142 REV__ENSG00000115568|ENST00000411696|ZNF142 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.2442626953125 2 629.285994 1256.55744 NaN NaN NaN NaN NaN NaN NaN 14.239 1 14.246 13.746 14.746 0.0073986 0 0 0 0.94144 1 7051 7051 1.4819 0.28856 1 + 51056 18993 34553 35338 59343 59343 -0.06058132164525887 QWCWRWWRRPN 11 Unmodified _QWCWRWWRRPN_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.9276123046875 2 837.404578 1672.7946 NaN NaN NaN NaN NaN NaN NaN 107.38 1 107.34 106.84 107.84 -0.047607 0 0 0 0.9435 1 59496 59496 0 0 1 + 51057 28896 34554 35339 59344 59344 -0.014882644321687621 QWDCFWHRD 9 Unmodified _QWDCFWHRD_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.5131225585938 3 431.513702 1291.51928 -0.23292 -0.00010051 -0.48092 -0.00020752 -0.71383 -0.00030803 431.5134195246234 22.94 0.25562 22.94 22.816 23.071 0 31 14 3 0 0 0 0.59218 1 11687 11687 0.96228 0.26461 1 2678000 51058 2442 34555 35340 59345 59345 -0.11482341350847491 QWDLQQQRV 9 Unmodified _QWDLQQQRV_ 0 0 0 nc|ENSG00000137821|Q8IUZ0-2|LRRC49;ENST00000559422.1_1_15:71272454-71302150:+|nuORF;ENST00000560980.5_1_15:71197061-71276639:+|nuORF;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49 nc|ENSG00000137821|Q8IUZ0-2|LRRC49 nc|ENSG00000137821|Q8IUZ0-2|LRRC49 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2088012695312 3 400.875516 1199.60472 NaN NaN NaN NaN NaN NaN NaN 19.527 1 19.527 19.027 20.027 0 0 0 0 0.85798 1 9770 9770 0.23584 0 1 51059 16222 34556 35341 59346 59346 0.012901471064424186 QWDVDTIYL 9 Unmodified _QWDVDTIYL_ 0 0 0 nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1;nc|ENSG00000079691|Q5VZK9-4|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.78271484375 2 576.782222 1151.54989 1.0792 0.00062249 -0.6529 -0.00037658 0.42634 0.00024591 576.7818291169016 94.788 0.7708 88.613 88.233 89.004 -6.1757 63 43 2 0 0 0 0.013041 1 62818 62818 71.922 19.654 1 8411500 51060 1282 34557 35342 59347 59347 -0.019822844848022214 QWEDLTPLTF 10 Unmodified _QWEDLTPLTF_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.309326171875 2 625.308603 1248.60265 0.29031 0.00018153 0.92804 0.00058031 1.2183 0.00076184 625.3091119373165 93.793 0.40167 93.372 93.168 93.57 -0.42044 44 17 3 0 0 0 0.041224 2 51289 51198;51289 62.573 49.53 1 2562800 51061 1058 34558 35343 59348;59349 59349 -0.011703264220159326 QWEDLTPLTF 10 Unmodified _QWEDLTPLTF_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.307861328125 2 625.308603 1248.60265 0.51336 0.00032101 2.2528 0.0014087 2.7662 0.0017297 625.3103612561075 99.928 0.10049 93.753 93.703 93.804 -6.1757 13 7 2 0 0 0 4.9436E-08 2 66718 66691;66718 145.13 109 1 38365000 51062 1058 34558 35343 59350;59351 59351 -0.011703264220159326 QWEDLTPLTF 10 Unmodified _QWEDLTPLTF_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 625.308603 1248.60265 1.9972 0.0012489 0.75744 0.00047363 2.7546 0.0017225 625.3085837898191 93.323 0.22958 93.346 93.242 93.472 0.02298 -0.14444 -0.00027064 NaN 145.13 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1011600 51063 1058 34558 35343 -0.011703264220159326 QWEGLEKDYV 10 Unmodified _QWEGLEKDYV_ 0 0 0 ENST00000444508.5_1_2:217277428-217279408:+|nuORF ENST00000444508.5_1_2:217277428-217279408:+|nuORF ENST00000444508.5_1_2:217277428-217279408:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2054443359375 3 422.871549 1265.59282 -0.52214 -0.0002208 -0.57433 -0.00024287 -1.0965 -0.00046367 422.87143942279755 19.259 0.15651 19.282 19.184 19.341 0.023106 13 9 2 0 0 0 0.71276 1 9723 9723 0.62683 0.21856 1 625960 51064 13438 34559 35344 59352 59352 -0.029355144273949918 QWETDDTA 8 Unmodified _QWETDDTA_ 0 0 0 nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS nc|ENSG00000105426|Q13332-3|PTPRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.5595092773438 1 965.384682 964.377405 -0.65087 -0.00062834 -0.5049 -0.00048743 -1.1558 -0.0011158 965.3836156581173 18.853 0.052074 18.876 18.849 18.902 0.023106 5 3 2 0 0 0 0.81107 1 9476 9476 0 0 1 393130 51065 2319 34560 35345 59353 59353 -0.10620855892204872 QWGMKERAG 9 Unmodified _QWGMKERAG_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MSMS AL20221201_MKP_PDAC_01 4 354.8450927734375 3 354.843159 1061.50765 NaN NaN NaN NaN NaN NaN NaN 40.918 1 36.31 35.81 36.81 -4.6079 0 0 0 0.76439 1 24498 24498 4.5289 0.19963 1 51066 8543 34561 35346 59354 59354 -0.02064538374179392 QWGWGWGWGG 10 Unmodified _QWGWGWGWGG_ 0 0 0 REV__ENST00000497544.2_2_11:1775127-1776230:-|nuORF REV__ENST00000497544.2_2_11:1775127-1776230:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7523803710938 2 588.754133 1175.49371 -0.52211 -0.0003074 -1.5703 -0.0009245 -2.0924 -0.0012319 588.7532210555424 18.028 0.26001 18.028 17.868 18.128 0 57 32 3 0 0 0 0.70951 1 8968 8968 1.8442 0.51471 1 871420 + 51067 27979 34562 35347 59355 59355 -0.0870144781097224 QWIHDFHI 8 Unmodified _QWIHDFHI_ 0 0 0 REV__ENSG00000177752|ENST00000415895|YIPF7 REV__ENSG00000177752|ENST00000415895|YIPF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8514404296875 3 365.850531 1094.52976 NaN NaN NaN NaN NaN NaN NaN 17.959 1 17.973 17.473 18.473 0.013865 0 0 0 0.97444 1 8969 8969 1.6526 0.58116 1 + 51068 23004 34563 35348 59356 59356 -0.013719906341293608 QWKQDILRQYF 11 Unmodified _QWKQDILRQYF_ 0 0 0 REV__nc|ENSG00000107938|Q3B7T1-5|EDRF1 REV__nc|ENSG00000107938|Q3B7T1-5|EDRF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8469543457031 4 381.954401 1523.7885 -0.50684 -0.00019359 -0.89899 -0.00034337 -1.4058 -0.00053696 381.95380986491426 19.263 0.10835 19.263 19.217 19.326 0 13 6 3 0 0 0 0.30599 1 9656 9656 0.50596 0.41111 1 546520 + 51069 18586 34564 35349 59357 59357 0.04755495817312294 QWLLRPLVL 9 Unmodified _QWLLRPLVL_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.361083984375 2 569.360776 1136.707 1.2707 0.00072347 -0.28768 -0.00016379 0.98299 0.00055967 569.3605545232076 91.776 0.22086 91.808 91.693 91.914 0.032135 13 7 2 0 0 0 0.012148 1 51056 51056 74.423 52.676 1 4815100 51070 1698 34565 35350 59358 59358 0.14411464916020122 QWLLRPLVL 9 Unmodified _QWLLRPLVL_ 0 0 0 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 ENSG00000099377|ENST00000297679|HSD3B7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3607177734375 2 569.360776 1136.707 0.3747 0.00021334 0.45249 0.00025763 0.82718 0.00047096 569.3613362351463 99.824 0.12636 93.648 93.6 93.727 -6.1757 20 9 3 0 0 0 0.012148 1 66595 66595 74.423 57.48 1 43805000 51071 1698 34565 35350 59359 59359 0.14411464916020122 QWLRKQYVS 9 Unmodified _QWLRKQYVS_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3328857421875 2 604.332747 1206.65094 NaN NaN NaN NaN NaN NaN NaN 87.194 1 86.69 86.19 87.19 -0.50423 0 0 0 0.85798 1 47700 47700 0.52476 0 1 51072 5033 34566 35351 59360 59360 0.05588212008547089 QWLRPKTH 8 Unmodified _QWLRPKTH_ 0 0 0 ENSG00000140987|ENST00000396852|ZSCAN32;ENST00000304926.7_1_16:3440119-3447566:-|nuORF ENSG00000140987|ENST00000396852|ZSCAN32 ENSG00000140987|ENST00000396852|ZSCAN32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.301025390625 2 533.30125 1064.58795 0.0091835 4.8976E-06 0.070002 3.7332E-05 0.079186 4.223E-05 533.3017250705548 37.935 0.18833 37.952 37.859 38.048 0.01704 14 8 2 0 0 0 0.76266 1 20178 20178 11.64 0.14559 1 1502400 51073 5290 34567 35352 59361 59361 0.05823691011164556 QWMEEEELW 9 Unmodified _QWMEEEELW_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.2647094726562 2 640.268621 1278.52269 0.29726 0.00019033 0.28391 0.00018178 0.58118 0.00037211 640.2684603978953 75.051 0.59523 75.097 74.813 75.409 0.045959 89 28 4 0 0 0 0.43463 1 41281 41281 10.824 0 1 33440000 + 51074 20066 34568 35353 59362 59362 -0.10543136087494531 QWMEEEELW 9 Unmodified _QWMEEEELW_ 0 0 0 REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 640.268621 1278.52269 0.48224 0.00030876 -4.181 -0.002677 -3.6988 -0.0023682 640.2653809735561 75.55 0.081551 75.073 75.023 75.104 -0.47714 -0.012075 -0.0054089 NaN 10.824 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 380860 + 51075 20066 34568 35353 -0.10543136087494531 QWPELLLRF 9 Unmodified _QWPELLLRF_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000227942|Q9BZ68|FRMD8P1 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3409423828125 2 601.340041 1200.66553 0.62208 0.00037408 0.48198 0.00028984 1.1041 0.00066392 601.3404668314533 100.19 0.24973 94.017 93.838 94.088 -6.1757 46 15 5 0 0 0 0.0082353 1 66865 66865 96.111 58.137 1 99131000 51076 3945 34569 35354 59363 59363 0.07322284156703063 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3079833984375 2 617.306198 1232.59784 0.45387 0.00028018 1.7971 0.0011093 2.2509 0.0013895 617.3072894996209 76.301 0.7215 75.821 75.187 75.909 -0.47945 46 30 2 0 0 0 0.42068 1 41698 41698 20.454 14.248 1 485040 51077 3186 34570 35355 59364 59364 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.305908203125 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 76.694 1 76.214 75.714 76.714 -0.47945 0 0 0 0.71851 1 41991 41991 15.847 9.124 1 51078 3186 34570 35355 59365 59365 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3052978515625 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 76.968 1 76.489 75.989 76.989 -0.47945 0 0 0 0.81521 1 42139 42139 11.64 5.9084 1 51079 3186 34570 35355 59366 59366 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.304443359375 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 77.293 1 76.81 76.31 77.31 -0.4826 0 0 0 0.96981 1 42314 42314 3.9444 1.8846 1 51080 3186 34570 35355 59367 59367 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20221201_MKP_PDAC_01 4 617.30712890625 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 86.591 1 80.415 79.915 80.915 -6.1757 0 0 0 0.049482 1 57085 57085 57.471 34.735 1 51081 3186 34570 35355 59368 59368 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20221201_MKP_PDAC_01 4 617.3052368164062 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 86.778 1 80.602 80.102 81.102 -6.1757 0 0 0 0.023095 1 57211 57211 64.236 44.979 1 51082 3186 34570 35355 59369 59369 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20221201_MKP_PDAC_01 4 617.3060913085938 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 87.194 1 81.019 80.519 81.519 -6.1757 0 0 0 0.21264 1 57490 57490 42.095 27.256 1 51083 3186 34570 35355 59370 59370 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MSMS AL20221201_MKP_PDAC_01 4 617.30517578125 2 617.306198 1232.59784 NaN NaN NaN NaN NaN NaN NaN 87.381 1 81.206 80.706 81.706 -6.1757 0 0 0 0.01817 1 57618 57618 78.149 50.521 1 51084 3186 34570 35355 59371 59371 -0.009151657741313102 QWPPDPPLHF 10 Unmodified _QWPPDPPLHF_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1;ENST00000466465.5_1_2:46607308-46611796:+|nuORF ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 617.306198 1232.59784 0.44614 0.00027541 1.4665 0.00090529 1.9127 0.0011807 617.8088665133946 75.714 0.3266 75.762 75.537 75.864 0.047943 -0.029493 -0.00030433 NaN 20.454 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2275100 51085 3186 34570 35355 -0.009151657741313102 QWPQPDKPMFF 11 Unmodified _QWPQPDKPMFF_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 710.8413696289062 2 710.839548 1419.66454 0.79906 0.000568 0.20718 0.00014727 1.0062 0.00071527 710.8397225848879 88.846 0.64287 82.671 82.292 82.935 -6.1757 46 35 2 0 0 0 0.0024728 2 58534 58534;58669 79.596 63.447 1 11568000 51086 293 34571 35356 59372;59373 59372 -0.028502982745521876 QWPQPDKPMFF 11 Oxidation (M) _QWPQPDKPM(Oxidation (M))FF_ QWPQPDKPM(1)FF QWPQPDKPM(58)FF 0 0 1 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20221201_MKP_PDAC_01 4 718.837890625 2 718.837005 1435.65946 NaN NaN NaN NaN NaN NaN NaN 73.428 1 67.252 66.752 67.752 -6.1757 0 0 0 0.065884 1 48020 48020 57.722 43.816 1 51087 293 34571 35357 59374 59374 25 -0.040946021371610186 QWPWQASLQF 10 Unmodified _QWPWQASLQF_ 0 0 0 nc|ENSG00000160183|P57727-2|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000476848.5_1_21:43803140-43803371:-|nuORF nc|ENSG00000160183|P57727-2|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.820068359375 2 645.81693 1289.61931 4.2111 0.0027196 -1.0016 -0.00064687 3.2095 0.0020728 645.8163362649337 98.733 0.32777 98.705 98.506 98.833 -0.028282 31 11 4 0 0 0 0.0045909 1 54813 54813 99.799 74.4 1 9588800 51088 6690 34572 35358 59375 59375 -0.013917807453935893 QWPWQASLQF 10 Unmodified _QWPWQASLQF_ 0 0 0 nc|ENSG00000160183|P57727-2|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;nc|ENSG00000160183|P57727-4|TMPRSS3;nc|ENSG00000160183|P57727-3|TMPRSS3;ENST00000476848.5_1_21:43803140-43803371:-|nuORF nc|ENSG00000160183|P57727-2|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.818115234375 2 645.81693 1289.61931 0.91939 0.00059376 0.035073 2.2651E-05 0.95446 0.00061641 645.8167484508214 100.48 0.15879 94.303 94.215 94.374 -6.1757 29 9 4 0 0 0 2.255E-05 1 67159 67159 125.53 75.596 1 180350000 51089 6690 34572 35358 59376 59376 -0.013917807453935893 QWQEKPLCLG 10 Unmodified _QWQEKPLCLG_ 0 0 0 ENST00000512791.1_1_4:145636196-145636656:+|nuORF;ENSG00000164161|ENST00000296575|HHIP ENST00000512791.1_1_4:145636196-145636656:+|nuORF ENST00000512791.1_1_4:145636196-145636656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2066040039062 3 401.205986 1200.59613 0.1203 4.8267E-05 0.30312 0.00012162 0.42343 0.00016988 401.205904231281 73.813 0.27084 73.857 73.672 73.943 0.043983 23 12 3 0 0 0 0.69377 1 40664 40664 1.7423 0.41263 1 3283800 51090 7149 34573 35359 59377 59377 0.003854571456258782 QWQRYQHQWQR 11 Unmodified _QWQRYQHQWQR_ 0 0 0 ENST00000577066.2_1_17:79004653-79005004:-|nuORF ENST00000577066.2_1_17:79004653-79005004:-|nuORF ENST00000577066.2_1_17:79004653-79005004:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 822.399169921875 2 822.400547 1642.78654 NaN NaN NaN NaN NaN NaN NaN 96.056 1 95.751 95.251 96.251 -0.30472 0 0 0 0.9435 1 52461 52461 0 0 1 51091 15527 34574 35360 59378 59378 -0.00914120147945141 QWRDRWRARRH 11 Unmodified _QWRDRWRARRH_ 0 0 0 REV__nc|ENSG00000105711|Q07699-2|SCN1B REV__nc|ENSG00000105711|Q07699-2|SCN1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.935302734375 2 811.935422 1621.85629 NaN NaN NaN NaN NaN NaN NaN 102.63 1 102.58 102.08 103.08 -0.047356 0 0 0 0.9435 1 57004 57004 0 0 1 + 51092 29550 34575 35361 59379 59379 0.07023803311335541 QWRRRQRRRVR 11 Unmodified _QWRRRQRRRVR_ 0 0 0 ENST00000370332.5_1_1:92949124-92949509:-|nuORF ENST00000370332.5_1_1:92949124-92949509:-|nuORF ENST00000370332.5_1_1:92949124-92949509:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.9962158203125 2 826.998888 1651.98322 NaN NaN NaN NaN NaN NaN NaN 86.33 1 86.391 85.891 86.891 0.061638 0 0 0 0.9435 1 47918 47918 0 0 1 51093 12328 34576 35362 59380 59380 0.18331149256300705 QWRRRRRRRKR 11 Unmodified _QWRRRRRRRKR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.5324096679688 2 855.53343 1709.05231 NaN NaN NaN NaN NaN NaN NaN 101.31 1 101.31 100.81 101.81 0 0 0 0 0.9435 1 55894 55894 0 0 1 + 51094 27819 34577 35363 59381 59381 0.22614233275885454 QWRRRRRRRKR 11 Unmodified _QWRRRRRRRKR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.5328979492188 2 855.53343 1709.05231 NaN NaN NaN NaN NaN NaN NaN 93.69 1 87.514 87.014 88.014 -6.1757 0 0 0 0.9435 1 62027 62027 0 0 1 + 51095 27819 34577 35363 59382 59382 0.22614233275885454 QWRRRRRRRKR 11 Unmodified _QWRRRRRRRKR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.5313720703125 2 855.53343 1709.05231 NaN NaN NaN NaN NaN NaN NaN 93.872 1 87.696 87.196 88.196 -6.1757 0 0 0 0.9435 1 62160 62160 0 0 1 + 51096 27819 34577 35363 59383 59383 0.22614233275885454 QWRRRRRRRKR 11 Unmodified _QWRRRRRRRKR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.52978515625 2 855.53343 1709.05231 NaN NaN NaN NaN NaN NaN NaN 94.049 1 87.873 87.373 88.373 -6.1757 0 0 0 0.9435 1 62283 62283 0 0 1 + 51097 27819 34577 35363 59384 59384 0.22614233275885454 QWRRRRRRRKR 11 Unmodified _QWRRRRRRRKR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.53271484375 2 855.53343 1709.05231 NaN NaN NaN NaN NaN NaN NaN 94.252 1 88.076 87.576 88.576 -6.1757 0 0 0 0.9435 1 62424 62424 0 0 1 + 51098 27819 34577 35363 59385 59385 0.22614233275885454 QWRTNLHDQ 9 Unmodified _QWRTNLHDQ_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8607177734375 3 399.863499 1196.56867 -0.17233 -6.8909E-05 -2.1961 -0.00087813 -2.3684 -0.00094704 399.861550002287 33.187 0.22418 33.216 33.093 33.317 0.028934 26 9 4 0 0 0 0.59532 1 17471 17471 0.86438 0 1 2083500 + 51099 17465 34578 35364 59386 59386 -0.021753100704017925 QWSEEREE 8 Unmodified _QWSEEREE_ 0 0 0 nc|ENSG00000227059|E9PGG2|ANHX;ENSG00000227059|ENST00000545940|ANHX nc|ENSG00000227059|E9PGG2|ANHX nc|ENSG00000227059|E9PGG2|ANHX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7324829101562 2 546.73326 1091.45197 0.26663 0.00014578 -0.55022 -0.00030083 -0.28359 -0.00015505 546.7331459966364 83.627 0.25565 83.627 83.474 83.729 0 21 12 2 0 0 0 0.80975 1 46358 46358 0.79363 0 1 719910 51100 10596 34579 35365 59387 59387 -0.09010093080792103 QWSVVVECED 10 Unmodified _QWSVVVECED_ 0 0 0 ENSG00000088826|ENST00000305958|SMOX;nc|ENSG00000088826|Q9NWM0-6|SMOX;nc|ENSG00000088826|Q9NWM0-5|SMOX ENSG00000088826|ENST00000305958|SMOX ENSG00000088826|ENST00000305958|SMOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2606811523438 2 597.260796 1192.50704 -0.14149 -8.4506E-05 1.2811 0.00076512 1.1396 0.00068062 597.2612248622918 56.519 0.25199 56.519 56.383 56.635 0 28 10 3 0 0 0 0.6067 1 31411 31411 10.8 2.644 1 4434600 51101 1497 34580 35366 59388 59388 -0.08151422604555592 QWTCPEDSL 9 Unmodified _QWTCPEDSL_ 0 0 0 ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000554621.1_1_12:96883387-96894780:+|nuORF ENSG00000188596|ENST00000524981|CFAP54 ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7305908203125 2 539.729132 1077.44371 0.75794 0.00040908 0.98603 0.00053219 1.744 0.00094127 539.7303334913519 19.095 0.32106 16.473 16.277 16.598 -2.6215 38 21 3 0 0 0 0.52067 1 10138 10138 6.2058 0 1 2534400 51102 9673 34581 35367 59389 59389 -0.09191363321770041 QWTSRKRK 8 Unmodified _QWTSRKRK_ 0 0 0 ENST00000275820.3_1_7:156745216-156745255:+|nuORF ENST00000275820.3_1_7:156745216-156745255:+|nuORF ENST00000275820.3_1_7:156745216-156745255:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.317138671875 2 545.317432 1088.62031 0.29242 0.00015946 -0.89245 -0.00048667 -0.60004 -0.00032721 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.80975 1 43163 43163 0.79363 0.10326 1 5672300 51103 11392 34582 35368 59390 59390 0.07954478414171717 QWVATTYLGF 10 Unmodified _QWVATTYLGF_ 0 0 0 REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3013916015625 2 593.300581 1184.58661 0.10652 6.3201E-05 1.5565 0.0009235 1.6631 0.0009867 593.3011779509064 79.425 0.23906 79.48 79.363 79.602 0.05497 14 8 2 0 0 0 0.6606 1 43932 43932 7.2892 1.5574 1 2156800 + 51104 21612 34583 35369 59391 59391 0.0017001213172989083 QWVPATWI 8 Unmodified _QWVPATWI_ 0 0 0 nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2914123535156 2 500.766178 999.517802 0.03835 1.9204E-05 3.5591 0.0017823 3.5974 0.0018015 500.766934664716 72.472 0.10617 72.514 72.442 72.548 0.041725 6 4 2 0 0 0 8.7369 1 39902 39902 0.79363 0 1 408970 51105 1338 34584 35370 59392 59392 0.018023926227101583 QWYFLHECIF 10 Unmodified _QWYFLHECIF_ 0 0 0 REV__ENSG00000273079|ENST00000609686|GRIN2B REV__ENSG00000273079|ENST00000609686|GRIN2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3207397460938 2 693.320991 1384.62743 -0.23025 -0.00015963 0.27929 0.00019364 0.049042 3.4002E-05 693.3210789790721 55.122 0.20699 55.122 54.986 55.193 0 12 8 2 0 0 0 0.66569 1 30645 30645 6.7232 0.99131 1 904050 + 51106 24633 34585 35371 59393 59393 -0.049499698202907894 QYADGLEQL 9 Unmodified _QYADGLEQL_ 0 0 0 ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7501220703125 2 518.750921 1035.48729 0.1556 8.0717E-05 0.2939 0.00015246 0.4495 0.00023318 518.7509846439963 52.341 0.24396 52.341 52.199 52.443 0 30 10 4 0 0 0 0.03568 1 28944 28944 52.268 16.141 1 5276400 51107 4167 34586 35372 59394 59394 -0.029034305530103666 QYADGLEQL 9 Unmodified _QYADGLEQL_ 0 0 0 ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH ENSG00000129932|ENST00000427575|DOHH MSMS AL20221201_MKP_PDAC_01 4 518.7508544921875 2 518.750921 1035.48729 NaN NaN NaN NaN NaN NaN NaN 60.473 1 54.325 53.825 54.825 -6.1478 0 0 0 0.14 1 38918 38918 37.974 5.6685 1 51108 4167 34586 35372 59395 59395 -0.029034305530103666 QYAHLEWLL 9 Unmodified _QYAHLEWLL_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.809326171875 2 586.808574 1171.60259 0.5197 0.00030496 0.81783 0.00047991 1.3375 0.00078488 586.8087625385322 82.578 0.30782 82.083 81.919 82.227 -0.4952 29 12 3 0 0 0 0.016184 1 45168 45168 67.344 38.857 1 1705200 51109 3464 34587 35373 59396 59396 0.023657183686509597 QYAIISEAW 9 Unmodified _QYAIISEAW_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7723388671875 2 540.771657 1079.52876 0.43659 0.0002361 0.34636 0.0001873 0.78295 0.0004234 540.7714328703174 74.655 0.24318 74.655 74.52 74.763 0 23 10 4 0 0 0 0.30562 1 41507 41507 16.942 9.0321 1 1129000 51110 7341 34588 35374 59397 59397 -0.007822497936786021 QYAIISEAW 9 Unmodified _QYAIISEAW_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7716674804688 2 540.771657 1079.52876 0.56798 0.00030715 -0.71254 -0.00038532 -0.14456 -7.8176E-05 540.7708976704024 75.152 0.3259 74.674 74.495 74.821 -0.47714 21 14 2 0 0 0 0.12841 1 41107 41107 30.225 4.8255 1 2371900 51111 7341 34588 35374 59398 59398 -0.007822497936786021 QYAIISEAW 9 Unmodified _QYAIISEAW_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7719116210938 2 540.771657 1079.52876 0.31638 0.00017109 -0.35415 -0.00019152 -0.037776 -2.0428E-05 540.7713289656106 82.436 0.43047 76.261 76.044 76.474 -6.1757 42 23 2 0 0 0 0.026094 2 54083 54083;54214 57.471 27.247 1 15830000 51112 7341 34588 35374 59399;59400 59399 -0.007822497936786021 QYAIISEAWRL 11 Unmodified _QYAIISEAWRL_ 0 0 0 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MSMS AL20221201_MKP_PDAC_01 4 675.3662719726562 2 675.364244 1348.71394 NaN NaN NaN NaN NaN NaN NaN 95.811 1 89.636 89.136 90.136 -6.1757 0 0 0 0.12691 1 63473 63473 55.249 26.754 1 51113 7341 34589 35375 59401 59401 0.05352733005929622 QYAKDIGFI 9 Unmodified _QYAKDIGFI_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7821655273438 2 527.782025 1053.5495 0.68506 0.00036156 -0.44487 -0.00023479 0.2402 0.00012677 527.7817401360379 53.434 0.28452 53.434 53.281 53.566 0 35 12 4 0 0 0 0.07087 1 29596 29596 39.95 3.8227 1 15447000 51114 10455 34590 35376 59402 59402 0.024863405860060084 QYAKDIGFI 9 Unmodified _QYAKDIGFI_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7822265625 2 527.782025 1053.5495 0.27553 0.00014542 0.0067568 3.5661E-06 0.28228 0.00014898 527.7819827080465 53.957 0.32008 53.491 53.306 53.626 -0.46664 39 15 3 0 0 0 0.023481 1 29169 29169 60.074 17.979 1 14072000 51115 10455 34590 35376 59403 59403 0.024863405860060084 QYAKDIGFI 9 Unmodified _QYAKDIGFI_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.781494140625 2 527.782025 1053.5495 NaN NaN NaN NaN NaN NaN NaN 53.622 1 53.559 53.059 54.059 -0.063423 0 0 0 0.6306 1 29095 29095 11.64 1.4569 1 51116 10455 34590 35376 59404 59404 0.024863405860060084 QYAKDIGFI 9 Unmodified _QYAKDIGFI_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000401543.2_1_9:90140306-90140387:+|nuORF;ENST00000496507.1_1_4:25680486-25680639:+|nuORF;ENST00000557367.2_1_14:50050387-50052826:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7837524414062 2 527.782025 1053.5495 0.88444 0.00046679 -0.31758 -0.00016761 0.56686 0.00029918 527.7818033280159 59.629 0.30205 53.514 53.255 53.557 -6.1147 39 15 3 0 0 0 0.0094097 1 38202 38202 82.529 26.352 1 90463000 51117 10455 34590 35376 59405 59405 0.024863405860060084 QYAPLLAVF 9 Unmodified _QYAPLLAVF_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2903442382812 2 511.289485 1020.56442 0.16432 8.4015E-05 1.1895 0.0006082 1.3539 0.00069221 511.29006245527484 99.639 0.14804 99.481 99.377 99.525 -0.1575 11 4 3 0 0 0 0.023164 1 54400 54400 60.39 26.287 1 2678800 51118 4807 34591 35377 59406 59406 0.0549583245398253 QYAPLLAVF 9 Unmodified _QYAPLLAVF_ 0 0 0 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 ENSG00000136261|ENST00000258761|BZW2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2891235351562 2 511.289485 1020.56442 1.2403 0.00063415 -0.40363 -0.00020637 0.83666 0.00042778 511.28932681080136 101.03 0.19114 94.851 94.748 94.939 -6.1757 26 10 4 0 0 0 0.010877 1 67686 67686 77.984 43.882 1 314050000 51119 4807 34591 35377 59407 59407 0.0549583245398253 QYAPSTAQF 9 Unmodified _QYAPSTAQF_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7406311035156 2 506.740357 1011.46616 0.22094 0.00011196 0.17188 8.7099E-05 0.39282 0.00019906 506.74014742233237 42.045 0.41353 42.045 41.785 42.199 0 62 21 4 0 0 0 0.013041 2 22665 22665;22781 71.922 37.82 1 97274000 51120 3643 34592 35378 59408;59409 59408 -0.03911395861860001 QYAPSTAQF 9 Unmodified _QYAPSTAQF_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7404479980469 2 506.740357 1011.46616 0.65397 0.00033139 0.5789 0.00029335 1.2329 0.00062474 506.7401794854222 48.865 0.46153 43.469 43.186 43.648 -5.3961 71 27 4 0 0 0 0.013041 2 30470 30351;30470 71.922 37.82 1 114120000 51121 3643 34592 35378 59410;59411 59411 -0.03911395861860001 QYAPSTAQF 9 Unmodified _QYAPSTAQF_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1013.22119140625 1 1012.47344 1011.46616 0.54477 0.00055157 0.38763 0.00039246 0.9324 0.00094403 1012.473902361085 48.857 0.33455 43.461 43.222 43.556 -5.3961 28 19 2 0 0 0 0.0048194 1 30383 30383 117.76 53.524 1 33449000 51122 3643 34592 35378 59412 59412 -0.03911395861860001 QYARIWNAL 9 Unmodified _QYARIWNAL_ 0 0 0 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8060302734375 2 567.806365 1133.59818 0.48237 0.00027389 -0.32659 -0.00018544 0.15578 8.8452E-05 567.8060038157197 60.72 0.28982 60.677 60.515 60.805 -0.04351 39 14 4 0 0 0 0.0010099 1 33104 33104 139.54 93.523 1 34558000 51123 973 34593 35379 59413 59413 0.03672253945751436 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2667846679688 2 542.266542 1082.51853 0.47635 0.00025831 0.27595 0.00014964 0.7523 0.00040794 542.2666778364822 69.269 0.29889 69.3 69.093 69.392 0.030922 44 14 4 0 0 0 0.011968 2 38120 38013;38120 86.121 47.97 1 26005000 51124 5237 34594 35380 59414;59415 59415 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2661743164062 2 542.266542 1082.51853 0.74385 0.00040337 -0.8588 -0.0004657 -0.11494 -6.233E-05 542.7678166260687 81.638 1.0471 75.462 75.15 76.197 -6.1757 133 58 3 0 0 0 0.013041 3 54044 53710;53863;54044 81.864 54.235 1 17234000 51125 5237 34594 35380 59416;59417;59418 59418 -0.019428127282481 QYASAFHFL 9 Unmodified _QYASAFHFL_ 0 0 0 nc|ENSG00000140463|Q96RK4-3|BBS4;ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF nc|ENSG00000140463|Q96RK4-3|BBS4 nc|ENSG00000140463|Q96RK4-3|BBS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2691650390625 2 542.266542 1082.51853 0.37062 0.00020097 3.5623 0.0019317 3.9329 0.0021327 542.2682320763016 82.477 0.27673 76.301 76.197 76.474 -6.1757 28 15 2 0 0 0 0.11784 1 54222 54222 42.095 18.305 1 9868300 51126 5237 34594 35380 59419 59419 -0.019428127282481 QYASLMHSF 9 Oxidation (M) _QYASLM(Oxidation (M))HSF_ QYASLM(1)HSF QYASLM(42)HSF 0 0 1 ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF ENSG00000125971|ENST00000357156|DYNLRB1 ENSG00000125971|ENST00000357156|DYNLRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7489624023438 2 550.247492 1098.48043 0.70238 0.00038648 -3.6741 -0.0020217 -2.9717 -0.0016352 550.7473040518237 38.595 0.31217 38.595 38.458 38.77 0 34 14 3 0 0 0 0.06187 1 20601 20601 42.095 29.563 1 4089100 51127 3918 34595 35381 59420 59420 700 -0.06487066705221878 QYASLMHSF 9 Oxidation (M) _QYASLM(Oxidation (M))HSF_ QYASLM(1)HSF QYASLM(89)HSF 0 0 1 ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF ENSG00000125971|ENST00000357156|DYNLRB1 ENSG00000125971|ENST00000357156|DYNLRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2457275390625 2 550.247492 1098.48043 0.0081896 4.5063E-06 -1.7781 -0.00097842 -1.77 -0.00097391 550.2465736428229 39.007 0.25055 38.72 38.562 38.812 -0.28687 24 10 3 0 0 0 0.008678 1 20533 20533 88.904 60.417 1 8522400 51128 3918 34595 35381 59421 59421 700 -0.06487066705221878 QYASLMHSF 9 Unmodified _QYASLMHSF_ 0 0 0 ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF ENSG00000125971|ENST00000357156|DYNLRB1 ENSG00000125971|ENST00000357156|DYNLRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2509765625 2 542.250034 1082.48552 0.23826 0.0001292 1.0062 0.00054562 1.2445 0.00067482 542.2505581044443 53.467 0.24649 53.015 52.841 53.087 -0.45173 19 11 2 0 0 0 0.016184 1 28899 28899 67.344 49.209 1 2904500 51129 3918 34595 35382 59422 59422 -0.05242762842613047 QYASLMHSF 9 Unmodified _QYASLMHSF_ 0 0 0 ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF ENSG00000125971|ENST00000357156|DYNLRB1 ENSG00000125971|ENST00000357156|DYNLRB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2515869140625 2 542.250034 1082.48552 1.3274 0.00071977 0.01886 1.0227E-05 1.3462 0.00073 542.2500308824879 58.908 0.5392 52.833 52.509 53.048 -6.0745 52 29 2 0 0 0 0.0082281 2 37627 37627;37772 92.822 68.148 1 43655000 51130 3918 34595 35382 59423;59424 59423 -0.05242762842613047 QYASRFVQL 9 Unmodified _QYASRFVQL_ 0 0 0 nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4;ENST00000507454.1_1_4:128812246-128813710:+|nuORF nc|ENSG00000142731|O00444-3|PLK4 nc|ENSG00000142731|O00444-3|PLK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7998046875 2 556.298373 1110.58219 0.84509 0.00047012 0.50444 0.00028062 1.3495 0.00075074 556.2985208484688 50.78 0.3036 50.367 50.214 50.518 -0.41351 38 14 4 0 0 0 0.010611 1 27316 27316 78.728 44.626 1 20561000 51131 5444 34596 35383 59425 59425 0.03132547708855782 QYASRFVQL 9 Unmodified _QYASRFVQL_ 0 0 0 nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4;ENST00000507454.1_1_4:128812246-128813710:+|nuORF nc|ENSG00000142731|O00444-3|PLK4 nc|ENSG00000142731|O00444-3|PLK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2981567382812 2 556.298373 1110.58219 1.3766 0.00076579 0.21572 0.00012001 1.5923 0.00088579 556.2983707768467 50.434 0.30454 50.386 50.21 50.515 -0.048828 42 14 4 0 0 0 0.0013034 2 27225 27225;27318 137.42 82.65 1 17380000 51132 5444 34596 35383 59426;59427 59426 0.03132547708855782 QYASRFVQL 9 Unmodified _QYASRFVQL_ 0 0 0 nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4;ENST00000507454.1_1_4:128812246-128813710:+|nuORF nc|ENSG00000142731|O00444-3|PLK4 nc|ENSG00000142731|O00444-3|PLK4 MSMS AL20221201_MKP_PDAC_01 4 556.2991943359375 2 556.298373 1110.58219 NaN NaN NaN NaN NaN NaN NaN 56.055 1 50.134 49.634 50.634 -5.9211 0 0 0 0.16996 1 35737 35737 34.402 5.9149 1 51133 5444 34596 35383 59428 59428 0.03132547708855782 QYASYEFVQRL 11 Unmodified _QYASYEFVQRL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 702.8536987304688 2 702.351334 1402.68811 -0.16478 -0.00011574 0.79175 0.00055609 0.62696 0.00044035 702.3520180575596 61.486 0.2786 60.996 60.838 61.116 -0.48932 31 12 3 0 0 0 0.083469 1 33461 33461 44.392 36.236 1 2941900 51134 9907 34597 35384 59429 59429 0.00287838763642867 QYASYEFVQRL 11 Unmodified _QYASYEFVQRL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 702.351334 1402.68811 0.44932 0.00031558 -0.39037 -0.00027418 0.058952 4.1405E-05 702.3509554770624 60.651 0.28889 60.607 60.457 60.745 -0.04351 -0.19462 -0.00072457 NaN 44.392 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 27440000 51135 9907 34597 35384 0.00287838763642867 QYATICQQL 9 Carbamidomethyl (C) _QYATIC(Carbamidomethyl (C))QQL_ QYATIC(1)QQL QYATIC(76)QQL 0 1 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7730102539062 2 562.773874 1123.53319 1.1327 0.00063745 -0.38267 -0.00021535 0.75003 0.0004221 562.773164279347 54.879 0.30489 49.013 48.864 49.168 -5.8653 30 18 2 0 0 0 0.011671 1 34849 34849 75.761 46.679 1 15903000 51136 9459 34598 35385 59430 59430 880 -0.023631086424074965 QYATICQQL 9 Carbamidomethyl (C) _QYATIC(Carbamidomethyl (C))QQL_ 0 1 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 562.773874 1123.53319 0.58909 0.00033153 0.13923 7.8356E-05 0.72833 0.00040988 563.2750084434049 49.077 0.16196 48.705 48.616 48.778 -0.37172 -0.15423 0.00050179 NaN 75.761 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 905590 51137 9459 34598 35385 880 -0.023631086424074965 QYAVLLNRF 9 Unmodified _QYAVLLNRF_ 0 0 0 ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF ENSG00000178694|ENST00000314622|NSUN3 ENSG00000178694|ENST00000314622|NSUN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3179931640625 2 562.316566 1122.61858 NaN NaN NaN NaN NaN NaN NaN 63.963 1 63.952 63.452 64.452 -0.010532 0 0 0 0.010967 1 35004 35004 120.45 72.105 1 51138 8766 34599 35386 59431 59431 0.06217424605551969 QYAVLLNRF 9 Unmodified _QYAVLLNRF_ 0 0 0 ENSG00000178694|ENST00000314622|NSUN3;ENST00000476588.5_1_3:93781949-93803329:+|nuORF ENSG00000178694|ENST00000314622|NSUN3 ENSG00000178694|ENST00000314622|NSUN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3173217773438 2 562.316566 1122.61858 NaN NaN NaN NaN NaN NaN NaN 64.142 1 64.131 63.631 64.631 -0.010529 0 0 0 0.061161 1 35106 35106 58.679 38.225 1 51139 8766 34599 35386 59432 59432 0.06217424605551969 QYCCRLQAF 9 2 Carbamidomethyl (C) _QYC(Carbamidomethyl (C))C(Carbamidomethyl (C))RLQAF_ QYC(1)C(1)RLQAF QYC(160)C(160)RLQAF 0 2 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.2800903320312 2 623.2788 1244.54305 1.0962 0.00068322 0.39031 0.00024327 1.4865 0.0009265 623.2792307244105 47.429 0.52371 42.196 41.973 42.496 -5.2339 87 31 4 0 0 0 1.0251E-06 3 29458 29327;29458;29610 162.95 128.85 1 40385000 51140 1157 34600 35387 59433;59434;59435 59434 103;104 -0.06944243908674252 QYCGDYELF 9 Carbamidomethyl (C) _QYC(Carbamidomethyl (C))GDYELF_ QYC(1)GDYELF QYC(78)GDYELF 0 1 0 ENSG00000142669|ENST00000270792|SH3BGRL3 ENSG00000142669|ENST00000270792|SH3BGRL3 ENSG00000142669|ENST00000270792|SH3BGRL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7405395507812 2 597.742239 1193.46993 0.35031 0.00020939 0.45631 0.00027275 0.80662 0.00048215 597.7423015109129 72.766 0.57814 66.59 66.331 66.909 -6.1757 47 29 2 0 0 0 0.010818 2 47667 47546;47667 78.149 57.696 1 17631000 51141 5437 34601 35388 59436;59437 59437 557 -0.11907094150319608 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7425537109375 2 535.743096 1069.47164 0.15922 8.5303E-05 -0.95593 -0.00051213 -0.7967 -0.00042683 535.7424946713145 49.013 0.44999 49.013 48.786 49.236 0 116 21 7 0 0 0 0.0082485 2 26859 26859;26979 96.285 73.136 1 547900000 51142 14844 34602 35389 59438;59439 59438 -0.06031717070072773 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.743896484375 2 535.743096 1069.47164 0.60503 0.00032414 -1.8578 -0.0009953 -1.2528 -0.00067116 535.7418057883639 49.435 0.23557 49.042 48.943 49.178 -0.3923 25 11 3 0 0 0 0.12424 1 26612 26612 30.637 15.798 1 2198600 51143 14844 34602 35389 59440 59440 -0.06031717070072773 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7433471679688 2 535.743096 1069.47164 0.32386 0.0001735 1.0697 0.00057311 1.3936 0.00074661 535.7436550489828 49.088 0.30779 49.045 48.887 49.195 -0.04369 36 14 3 0 0 0 0.018301 1 26491 26491 65.235 44.781 1 5437500 51144 14844 34602 35389 59441 59441 -0.06031717070072773 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7432861328125 2 535.743096 1069.47164 0.47023 0.00025192 0.096131 5.1502E-05 0.56636 0.00030343 535.7431196864062 56.723 0.57476 50.747 50.446 51.021 -5.9769 66 33 2 0 0 0 0.0004779 3 36197 36073;36197;36324 144.35 98.329 1 612010000 51145 14844 34602 35389 59442;59443;59444 59443 -0.06031717070072773 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1071.096435546875 1 1070.47892 1069.47164 0.35332 0.00037823 0.065076 6.9662E-05 0.4184 0.00044789 1070.4788624136984 56.739 0.41214 50.762 50.529 50.941 -5.9769 49 23 3 0 0 0 1.5911E-06 1 36127 36127 160.52 101.84 1 82100000 51146 14844 34602 35389 59445 59445 -0.06031717070072773 QYDEAVAQF 9 Unmodified _QYDEAVAQF_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000529239.1_1_8:61850552-61850903:-|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.743096 1069.47164 0.36962 0.00019802 -2.7128 -0.0014534 -2.3432 -0.0012554 535.7428323422674 50.595 0.18895 50.595 50.433 50.622 0 -0.075616 -0.0029692 NaN 144.35 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 819240 51147 14844 34602 35389 -0.06031717070072773 QYDESEEDE 9 Unmodified _QYDESEEDE_ 0 0 0 REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF REV__ENST00000490586.1_1_7:73634828-73639069:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2015380859375 2 572.201655 1142.38876 0.51969 0.00029737 -0.055904 -3.1988E-05 0.46379 0.00026538 572.2014671182528 82.282 0.62813 76.106 75.83 76.458 -6.1757 71 34 3 0 0 0 0.50598 1 54066 54066 10.824 5.0635 1 28293000 + 51148 17771 34603 35390 59446 59446 -0.17674123379356388 QYDGIFYEF 9 Unmodified _QYDGIFYEF_ 0 0 0 ENSG00000136783|ENST00000374767|NIPSNAP3A ENSG00000136783|ENST00000374767|NIPSNAP3A ENSG00000136783|ENST00000374767|NIPSNAP3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2621459960938 2 591.261122 1180.50769 0.083333 4.9272E-05 0.14844 8.7765E-05 0.23177 0.00013704 591.2612762276148 86.969 0.31271 86.969 86.805 87.118 0 48 20 3 0 0 0 0.43463 1 48127 48127 10.824 5.9269 1 1370300 51149 4854 34604 35391 59447 59447 -0.0753425989319112 QYDGIFYEF 9 Unmodified _QYDGIFYEF_ 0 0 0 ENSG00000136783|ENST00000374767|NIPSNAP3A ENSG00000136783|ENST00000374767|NIPSNAP3A ENSG00000136783|ENST00000374767|NIPSNAP3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.26123046875 2 591.261122 1180.50769 0.48665 0.00028774 -0.38562 -0.000228 0.10102 5.9732E-05 591.2610173794876 87.516 0.27709 87.012 86.877 87.154 -0.50423 27 12 3 0 0 0 0.042911 1 47861 47861 48.346 26.809 1 1003000 51150 4854 34604 35391 59448 59448 -0.0753425989319112 QYDKILDLI 9 Unmodified _QYDKILDLI_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.816650390625 2 560.816064 1119.61758 1.0244 0.00057449 -0.37075 -0.00020792 0.65364 0.00036657 560.8158553851772 79.429 0.39069 78.94 78.75 79.141 -0.48933 45 16 3 0 0 0 0.0090948 1 43540 43540 85.272 23.915 1 8483600 51151 7289 34605 35392 59449 59449 0.06255165445986677 QYDKILDLI 9 Unmodified _QYDKILDLI_ 0 0 0 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 ENSG00000165092|ENST00000297785|ALDH1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.817626953125 2 560.816064 1119.61758 1.4319 0.00080301 0.53082 0.00029769 1.9627 0.0011007 560.816530087899 96.843 0.35432 90.667 90.523 90.877 -6.1757 53 20 3 0 0 0 0.0071894 1 64115 64115 111.29 26.015 1 81048000 51152 7289 34605 35392 59450 59450 0.06255165445986677 QYDLATKRV 9 Unmodified _QYDLATKRV_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2055358886719 3 365.204862 1092.59276 -0.44069 -0.00016094 0.63498 0.0002319 0.1943 7.0959E-05 365.20515414484856 25.324 0.1661 25.324 25.239 25.406 0 11 7 2 0 0 0 0.53557 1 12981 12981 8.9762 6.6935 1 904090 51153 2963 34606 35393 59451 59451 0.050165303632638825 QYDLATKRV 9 Unmodified _QYDLATKRV_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2057189941406 3 365.204862 1092.59276 1.2097 0.00044179 0.66676 0.0002435 1.8765 0.00068529 365.20541524226877 28.257 0.17658 25.109 24.983 25.16 -3.1482 15 8 2 0 0 0 0.10247 1 15753 15753 43.982 23.567 1 4971000 51154 2963 34606 35393 59452 59452 0.050165303632638825 QYDMTLTSF 9 Oxidation (M) _QYDM(Oxidation (M))TLTSF_ QYDM(1)TLTSF QYDM(71)TLTSF 0 0 1 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.242431640625 2 561.244615 1120.47468 0.0020159 1.1314E-06 -1.23 -0.00069033 -1.228 -0.0006892 561.2436436143951 55.18 0.36034 55.18 55.029 55.389 0 45 15 4 0 0 0 0.013323 2 30716 30612;30716 71.134 58.602 1 19819000 51155 7358 34607 35394 59453;59454 59454 1269 -0.08074210007544025 QYDMTLTSF 9 Oxidation (M) _QYDM(Oxidation (M))TLTSF_ QYDM(1)TLTSF QYDM(61)TLTSF 0 0 1 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2446899414062 2 561.244615 1120.47468 0.15345 8.6125E-05 -1.1688 -0.000656 -1.0154 -0.00056988 561.243538173382 55.821 0.30823 55.343 55.192 55.5 -0.47798 23 14 2 0 0 0 0.022193 1 30297 30297 61.357 43.222 1 2981600 51156 7358 34607 35394 59455 59455 1269 -0.08074210007544025 QYDMTLTSF 9 Oxidation (M) _QYDM(Oxidation (M))TLTSF_ QYDM(1)TLTSF QYDM(92)TLTSF 0 0 1 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2454223632812 2 561.244615 1120.47468 1.0043 0.00056367 0.38243 0.00021464 1.3868 0.00077831 561.2447339411988 63.118 0.57055 56.942 56.821 57.391 -6.1757 61 32 2 0 0 0 0.0082661 2 40725 40725;40885 92.491 74.356 1 28568000 51157 7358 34607 35394 59456;59457 59456 1269 -0.08074210007544025 QYDMTLTSF 9 Unmodified _QYDMTLTSF_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7471313476562 2 553.247157 1104.47976 0.20149 0.00011147 0.17109 9.4653E-05 0.37257 0.00020612 553.2475612056462 70.579 0.2847 70.579 70.402 70.686 0 25 11 3 0 0 0 0.32871 1 39291 39291 15.847 7.937 1 1360000 51158 7358 34607 35395 59458 59458 -0.06829906144935194 QYDMTLTSF 9 Unmodified _QYDMTLTSF_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8;nc|ENSG00000165533|Q8TAM2-2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2459716796875 2 553.247157 1104.47976 0.62697 0.00034687 -0.10619 -5.875E-05 0.52078 0.00028812 553.246293043198 71.133 0.40233 70.656 70.389 70.791 -0.47735 34 17 3 0 0 0 0.022193 1 38917 38917 61.357 38.209 1 2887700 51159 7358 34607 35395 59459 59459 -0.06829906144935194 QYDNLLFF 8 Unmodified _QYDNLLFF_ 0 0 0 nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1 nc|ENSG00000104047|Q8N5C7-2|DTWD1 nc|ENSG00000104047|Q8N5C7-2|DTWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2632446289062 2 530.260925 1058.5073 3.554 0.0018845 2.4093 0.0012775 5.9632 0.0031621 530.2619179521822 99.506 0.17514 99.469 99.379 99.554 -0.036301 16 6 3 0 0 0 0.50673 1 55269 55269 34.102 0 1 4095000 51160 2172 34608 35396 59460 59460 -0.019616348223962632 QYDQPRFR 8 Unmodified _QYDQPRFR_ 0 0 0 REV__ENST00000556354.5_1_14:23983477-24028046:+|nuORF REV__ENST00000556354.5_1_14:23983477-24028046:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7769775390625 2 555.277972 1108.54139 0.98384 0.0005463 0.31716 0.00017611 1.301 0.00072241 555.2788207735731 81.285 0.73074 80.793 80.641 81.372 -0.49247 53 36 2 0 0 0 0.74163 1 44670 44670 13.508 2.684 1 4979500 + 51161 24572 34609 35397 59461 59461 -0.008537936107813948 QYEDAEYYF 9 Unmodified _QYEDAEYYF_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2473754882812 2 614.245669 1226.47678 0.76616 0.00047061 -0.21421 -0.00013158 0.55195 0.00033904 614.2457366654811 60.326 0.33578 60.326 60.158 60.494 0 37 14 3 0 0 0 0.0088174 1 33622 33622 103.75 82.002 1 3552600 51162 3480 34610 35398 59462 59462 -0.1273945799810008 QYEDIAQK 8 Unmodified _QYEDIAQK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7451171875 2 497.745639 993.476725 -0.53603 -0.00026681 0.69859 0.00034772 0.16256 8.0912E-05 497.7458539556412 19.542 0.15034 19.57 19.451 19.602 0.028357 26 16 2 0 0 0 0.52622 1 9833 9833 32.305 3.8186 1 335140 + 51163 7667 34611 35399 59463 59463 -0.020274132074405316 QYEEQFVTL 9 Unmodified _QYEEQFVTL_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7794189453125 2 578.779679 1155.5448 0.36268 0.00020991 0.076887 4.45E-05 0.43956 0.00025441 578.779642734566 66.129 0.44969 66.129 65.898 66.348 0 79 21 5 0 0 0 0.0082485 2 36806 36806;36908 96.285 62.182 1 58825000 51164 1354 34612 35400 59464;59465 59464 -0.02674588347417739 QYEEQFVTL 9 Unmodified _QYEEQFVTL_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7799072265625 2 578.779679 1155.5448 0.27369 0.00015841 -0.54877 -0.00031762 -0.27508 -0.00015921 578.7798705716496 66.681 0.32858 66.197 66.005 66.333 -0.48323 31 15 3 0 0 0 0.0090948 1 36413 36413 85.272 58.388 1 3120200 51165 1354 34612 35400 59466 59466 -0.02674588347417739 QYEEQFVTL 9 Unmodified _QYEEQFVTL_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7798461914062 2 578.779679 1155.5448 0.85837 0.00049681 -0.14609 -8.4554E-05 0.71228 0.00041225 578.7793948326513 72.978 0.61629 66.802 66.504 67.12 -6.1757 76 30 3 0 0 0 0.0082485 3 47811 47581;47700;47811 96.285 69.401 1 118990000 51166 1354 34612 35400 59467;59468;59469 59469 -0.02674588347417739 QYEIWRELF 9 Unmodified _QYEIWRELF_ 0 0 0 nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3223266601562 2 642.324588 1282.63462 0.26842 0.00017241 -0.60835 -0.00039076 -0.33993 -0.00021835 642.3241585502468 87.876 0.3528 87.372 87.154 87.507 -0.50423 40 16 3 0 0 0 0.11784 2 48004 48004;48100 31.268 21.194 1 3664100 51167 7718 34613 35401 59470;59471 59470 0.0046108605179142614 QYEIWRELF 9 Unmodified _QYEIWRELF_ 0 0 0 nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8257446289062 2 642.324588 1282.63462 0.015922 1.0227E-05 0.2837 0.00018223 0.29963 0.00019246 642.3247416913258 99.008 0.14392 92.832 92.764 92.908 -6.1757 30 8 5 0 0 0 1.3386E-11 1 65792 65792 179.17 113.94 1 209400000 51168 7718 34613 35401 59472 59472 0.0046108605179142614 QYEKLFHKW 9 Unmodified _QYEKLFHKW_ 0 0 0 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.8932800292969 3 426.892507 1277.65569 -0.16853 -7.1945E-05 1.6275 0.00069475 1.4589 0.00062281 426.8931943236734 37.374 0.19138 37.103 37.015 37.206 -0.27133 17 7 3 0 0 0 0.54816 1 19657 19657 4.5289 2.7866 1 1762100 51169 3175 34614 35402 59473 59473 0.027970961513346992 QYEKLFHKW 9 Unmodified _QYEKLFHKW_ 0 0 0 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.8925170898438 3 426.892507 1277.65569 0.97715 0.00041714 0.13614 5.8116E-05 1.1133 0.00047525 426.89244392991867 41.124 0.39172 36.516 36.311 36.703 -4.6079 58 24 3 0 0 0 0.040683 2 24583 24583;24706 49.554 33.816 1 31986000 51170 3175 34614 35402 59474;59475 59474 0.027970961513346992 QYEKLFHKW 9 Unmodified _QYEKLFHKW_ 0 0 0 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 ENSG00000115942|ENST00000234296|ORC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2263488769531 3 426.892507 1277.65569 0.99727 0.00042573 -0.52239 -0.000223 0.47488 0.00020272 426.89249211604084 75.357 0.68873 69.181 68.832 69.521 -6.1757 92 37 3 0 0 0 0.091924 3 49167 49167;49290;49415 34.932 11.376 1 31873000 51171 3175 34614 35402 59476;59477;59478 59476 0.027970961513346992 QYEQVKQLF 9 Unmodified _QYEQVKQLF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.811767578125 2 591.811313 1181.60807 0.2833 0.00016766 0.53091 0.0003142 0.81421 0.00048186 591.8116285413938 50.715 0.32487 50.715 50.518 50.843 0 36 18 3 0 0 0 0.0085164 1 27914 27914 99.799 68.531 1 8519900 51172 3829;16172 34615 35403 59479 59479 0.02453397160456916 QYEQVKQLF 9 Unmodified _QYEQVKQLF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.811767578125 2 591.811313 1181.60807 0.084427 4.9965E-05 0.98686 0.00058404 1.0713 0.000634 591.8116301375647 51.195 0.39217 50.782 50.557 50.949 -0.41351 60 19 4 0 0 0 0.0021556 1 27606 27606 131.27 85.568 1 25066000 51173 3829;16172 34615 35403 59480 59480 0.02453397160456916 QYEQVKQLF 9 Unmodified _QYEQVKQLF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8115234375 2 591.811313 1181.60807 0.50251 0.00029739 0.37992 0.00022484 0.88243 0.00052223 591.8115684464148 56.613 0.48562 50.636 50.357 50.843 -5.9769 69 27 3 0 0 0 1.0053E-06 2 36188 36047;36188 163.04 107.53 1 134450000 51174 3829;16172 34615 35403 59481;59482 59482 0.02453397160456916 QYERDFERI 9 Unmodified _QYERDFERI_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2063293457031 3 419.207043 1254.5993 -1.1504 -0.00048224 0.46759 0.00019602 -0.68277 -0.00028622 419.2070436747681 32.677 0.21007 32.677 32.561 32.772 0 24 10 3 0 0 0 0.21643 1 17081 17081 15.739 4.2207 1 6002700 51175 574 34616 35404 59483 59483 -0.017815764760143793 QYERDFERI 9 Unmodified _QYERDFERI_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2079162597656 3 419.207043 1254.5993 1.0849 0.00045478 0.44494 0.00018652 1.5298 0.0006413 419.2074160757956 36.739 0.33081 32.456 32.283 32.613 -4.2835 31 20 2 0 0 0 0.47846 1 21450 21450 17.443 9.9656 1 7203800 51176 574 34616 35404 59484 59484 -0.017815764760143793 QYERDFERI 9 Unmodified _QYERDFERI_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 419.207043 1254.5993 1.0849 0.00045478 0.44494 0.00018652 1.5298 0.0006413 419.2074160757956 36.739 0.33081 32.456 32.283 32.613 -4.2835 -0.11065 -1.6851E-05 NaN 15.739 31 20 2 NaN NaN NaN NaN 0 NaN NaN 0 7203800 51177 574 34616 35404 -0.017815764760143793 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3015747070312 2 588.800414 1175.58628 0.14242 8.3859E-05 0.52811 0.00031095 0.67054 0.00039481 588.8006824609964 58.499 0.46541 58.499 58.233 58.699 0 65 18 5 0 0 0 0.018301 1 32514 32514 65.235 23.14 1 39161000 51178 4050;7941 34617 35405 59485 59485 0.005505924119233896 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.801025390625 2 588.800414 1175.58628 0.25317 0.00014907 0.71944 0.00042361 0.97261 0.00057267 588.800811314689 58.933 0.41199 58.442 58.232 58.644 -0.49079 76 19 5 0 0 0 0.015445 2 32081 31981;32081 68.081 25.986 1 108420000 51179 4050;7941 34617 35405 59486;59487 59487 0.005505924119233896 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.80078125 2 588.800414 1175.58628 0.68559 0.00040368 -0.33742 -0.00019867 0.34817 0.000205 588.8003893370479 58.576 0.37014 58.515 58.254 58.624 -0.060719 38 18 3 0 0 0 0.05447 1 31866 31866 43.858 9.7559 1 11552000 51180 4050;7941 34617 35405 59488 59488 0.005505924119233896 QYESKVFYL 9 Unmodified _QYESKVFYL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH;ENSG00000170027|ENST00000307630|YWHAG ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8006591796875 2 588.800414 1175.58628 1.2917 0.00076054 0.0056196 3.3088E-06 1.2973 0.00076385 588.8003209873054 64.003 1.13 57.827 57.427 58.557 -6.1757 174 61 4 0 0 0 0.011671 4 41784 41373;41504;41651;41784 75.761 37.146 1 376450000 51181 4050;7941 34617 35405 59489;59490;59491;59492 59492 0.005505924119233896 QYESVSDLF 9 Unmodified _QYESVSDLF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2511596679688 2 544.250754 1086.48696 0.029895 1.627E-05 0.51962 0.0002828 0.54952 0.00029907 544.251130031839 70.251 0.32103 70.251 70.153 70.474 0 29 13 3 0 0 0 0.031062 1 39200 39200 54.774 28.432 1 1893100 51182 763 34618 35406 59493 59493 -0.05282850272851647 QYFAEPMML 9 2 Oxidation (M) _QYFAEPM(Oxidation (M))M(Oxidation (M))L_ QYFAEPM(1)M(1)L QYFAEPM(42)M(42)L 0 0 2 ENSG00000204713|ENST00000377199|TRIM27;nc|ENSG00000204713|P14373-2|TRIM27;ENST00000481474.5_1_6:28876558-28891553:-|nuORF ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2484130859375 2 581.251385 1160.48822 -0.067495 -3.9232E-05 -1.7782 -0.0010336 -1.8457 -0.0010728 581.2496994870596 55.189 0.53826 55.189 54.876 55.414 0 51 23 4 0 0 0 0.06187 1 30683 30683 42.095 30.454 1 3628800 51183 10323 34619 35407 59494 59494 1683;1684 -0.08560675499938952 QYFIEAHEI 9 Unmodified _QYFIEAHEI_ 0 0 0 nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2840576171875 2 575.282389 1148.55022 0.44947 0.00025857 1.8042 0.0010379 2.2537 0.0012965 575.2842207758946 52.739 0.24651 52.739 52.552 52.798 0 17 10 2 0 0 0 0.022193 1 29192 29192 61.357 29.052 1 2451700 51184 1531 34620 35408 59495 59495 -0.01810864764956932 QYFKNLHRF 9 Unmodified _QYFKNLHRF_ 0 0 0 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2246398925781 3 418.224368 1251.65128 -0.11872 -4.9653E-05 1.2451 0.00052071 1.1263 0.00047106 418.2249689482781 29.977 0.29147 30.007 29.868 30.159 0.030106 15 11 2 0 0 0 0.19127 1 15659 15659 17.443 14.37 1 2957400 51185 2657 34621 35409 59496 59496 0.03551631728396387 QYFMCKCE 8 Carbamidomethyl (C) _QYFMC(Carbamidomethyl (C))KCE_ QYFMC(0.5)KC(0.5)E QYFMC(0)KC(0)E 0 1 0 ENST00000546503.1_1_12:113715083-113718023:+|nuORF ENST00000546503.1_1_12:113715083-113718023:+|nuORF ENST00000546503.1_1_12:113715083-113718023:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7158813476562 2 554.716655 1107.41876 0.35994 0.00019966 -0.51744 -0.00028704 -0.15751 -8.7373E-05 554.7162642243169 49.008 0.32076 49.008 48.874 49.194 0 39 15 3 0 0 0 0.21583 1 26918 26918 67.344 29.37 2 18030000 51186 15106 34622 35410 59497 59497 994;995 -0.13065457720381346 QYFNMEMC 8 Unmodified _QYFNMEMC_ 0 0 0 ENST00000471538.1_1_1:16200123-16200204:+|nuORF ENST00000471538.1_1_1:16200123-16200204:+|nuORF ENST00000471538.1_1_1:16200123-16200204:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.1956176757812 2 533.195556 1064.37656 0.11307 6.0286E-05 0.99616 0.00053115 1.1092 0.00059143 533.1957294036367 42.036 0.28005 42.036 41.881 42.161 0 40 14 4 0 0 0 0.79783 1 22696 22696 7.9102 1.187 1 19912000 51187 13877 34623 35411 59498 59498 -0.15305433128742152 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7796630859375 2 563.782025 1125.5495 NaN NaN NaN NaN NaN NaN NaN 55.229 1 55.161 54.661 55.661 -0.068737 0 0 0 0.14754 1 30010 30010 39.95 18.203 1 51188 1567 34624 35412 59499 59499 -0.008256594140220841 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7864379882812 2 563.782025 1125.5495 NaN NaN NaN NaN NaN NaN NaN 55.263 1 55.194 54.694 55.694 -0.068737 0 0 0 0.14754 1 30029 30029 47.749 24.6 1 51189 1567 34624 35412 59500 59500 -0.008256594140220841 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7825317382812 2 563.782025 1125.5495 1.2734 0.00071791 0.055729 3.1419E-05 1.3291 0.00074933 563.7819292400249 61.39 0.62604 55.243 54.978 55.604 -6.1478 76 31 3 0 0 0 0.0088668 3 39697 39450;39574;39697 85.642 47.49 1 127700000 51190 1567 34624 35412 59501;59502;59503 59503 -0.008256594140220841 QYFPKAPEF 9 Unmodified _QYFPKAPEF_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-5|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.782025 1125.5495 0.55109 0.00031069 -1.6985 -0.0009576 -1.1474 -0.0006469 563.7804925915248 55.209 0.10083 55.141 55.057 55.158 -0.068737 -0.050921 -0.0019218 NaN 85.642 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1769200 51191 1567 34624 35412 -0.008256594140220841 QYFSSGKYYW 10 Unmodified _QYFSSGKYYW_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 665.303466796875 2 664.800946 1327.58734 0.85266 0.00056685 -0.95087 -0.00063214 -0.098212 -6.5291E-05 664.800391900974 56.811 0.21959 56.742 56.619 56.839 -0.068741 19 10 2 0 0 0 0.50362 1 30893 30893 16.149 6.766 1 3600500 51192 4383 34625 35413 59504 59504 -0.06335193219183566 QYFSYYELRNE 11 Unmodified _QYFSYYELRNE_ 0 0 0 REV__ENSG00000186105|ENST00000334994|LRRC70 REV__ENSG00000186105|ENST00000334994|LRRC70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.5653076171875 3 504.564896 1510.67286 0.2284 0.00011524 0.82221 0.00041486 1.0506 0.0005301 504.5652191169569 73.029 0.63351 72.553 72.318 72.952 -0.47588 83 28 4 0 0 0 0.7326 1 39933 39933 0.40827 0 1 5746600 + 51193 23551 34626 35414 59505 59505 -0.0620507282417293 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.30029296875 2 624.300778 1246.587 -0.060221 -3.7596E-05 0.13584 8.4806E-05 0.07562 4.7209E-05 624.3008557296907 52.106 0.28757 52.106 51.976 52.264 0 27 12 3 0 0 0 0.35903 1 28853 28853 24.021 4.6586 1 4026500 51194 13301 34627 35415 59506 59506 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.3008422851562 2 624.300778 1246.587 0.3461 0.00021607 -0.45722 -0.00028544 -0.11112 -6.9372E-05 624.3004257956023 52.682 0.39173 52.247 52.063 52.455 -0.43489 74 19 5 0 0 0 0.18021 2 28519 28409;28519 36.127 12.106 1 96314000 51195 13301 34627 35415 59507;59508 59508 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.301025390625 2 624.300778 1246.587 0.28335 0.00017689 1.068 0.00066675 1.3513 0.00084364 624.3011838252761 51.107 0.30607 51.053 50.901 51.207 -0.053875 25 14 2 0 0 0 0.44373 1 27661 27661 19.257 9.1831 1 1625600 51196 13301 34627 35415 59509 59509 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.8019409179688 2 624.300778 1246.587 0.88358 0.00055162 -0.67917 -0.00042401 0.20441 0.00012761 624.3003149976929 52.358 0.33825 52.299 52.148 52.486 -0.058918 54 16 4 0 0 0 0.18021 2 28324 28324;28423 36.127 14.59 1 43889000 51197 13301 34627 35415 59510;59511 59510 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3009033203125 2 624.300778 1246.587 1.0471 0.00065369 0.2749 0.00017162 1.322 0.00082531 624.300940816193 58.462 0.4895 52.388 52.109 52.598 -6.0745 69 26 3 0 0 0 0.024115 2 37324 37324;37446 71.922 30.083 1 67827000 51198 13301 34627 35415 59512;59513 59512 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 624.300778 1246.587 0.3461 0.00021607 -0.45722 -0.00028544 -0.11112 -6.9372E-05 624.3004257956023 52.682 0.39173 52.247 52.063 52.455 -0.43489 -0.012851 -0.00018149 NaN 71.922 74 19 5 NaN NaN NaN NaN 0 NaN NaN 0 96314000 51199 13301 34627 35415 -0.02642612939052924 QYFTTTWSTL 10 Unmodified _QYFTTTWSTL_ 0 0 0 ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF ENST00000434597.2_1_9:37477166-37477928:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 624.300778 1246.587 0.88358 0.00055162 -0.67917 -0.00042401 0.20441 0.00012761 624.3003149976929 52.358 0.33825 52.299 52.148 52.486 -0.058918 0.03926 -0.00045861 NaN 71.922 54 16 4 NaN NaN NaN NaN 0 NaN NaN 0 43889000 51200 13301 34627 35415 -0.02642612939052924 QYGDDDYMYF 10 Unmodified _QYGDDDYMYF_ 0 0 0 REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.745849609375 2 658.742436 1315.47032 2.4966 0.0016446 2.5665 0.0016907 5.0631 0.0033353 658.7441627029725 95.424 0.31017 95.429 95.265 95.575 0.004158 20 11 3 0 0 0 0.71123 1 53039 53039 1.6526 0.32309 1 1397300 + 51201 17801 34628 35416 59514 59514 -0.17479719221137202 QYGDDDYMYF 10 Unmodified _QYGDDDYMYF_ 0 0 0 REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B REV__nc|ENSG00000088305|Q9UBC3-7|DNMT3B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 658.742436 1315.47032 2.4966 0.0016446 2.5665 0.0016907 5.0631 0.0033353 658.7441627029725 95.424 0.31017 95.429 95.265 95.575 0.004158 0 0 NaN 1.6526 20 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1397300 + 51202 17801 34628 35416 -0.17479719221137202 QYGEVANLL 9 Unmodified _QYGEVANLL_ 0 0 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7641296386719 2 503.763832 1005.51311 0.55208 0.00027812 0.16641 8.383E-05 0.71849 0.00036195 503.76419489965747 66.078 0.68003 66.078 65.624 66.304 0 93 33 4 0 0 0 0.00856 2 36847 36847;36955 100.37 43.83 1 38014000 51203 5308 34629 35417 59515;59516 59515 0.010574636892783928 QYGEVANLL 9 Unmodified _QYGEVANLL_ 0 0 0 nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 nc|ENSG00000141252|Q5VIR6-2|VPS53 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7643127441406 2 503.763832 1005.51311 NaN NaN NaN NaN NaN NaN NaN 66.676 1 66.193 65.693 66.693 -0.48323 0 0 0 0.01764 1 36415 36415 81.613 41.164 1 51204 5308 34629 35417 59517 59517 0.010574636892783928 QYGGDLTNTF 10 Unmodified _QYGGDLTNTF_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2543334960938 2 558.253828 1114.4931 0.16151 9.0164E-05 -0.023565 -1.3155E-05 0.13795 7.7008E-05 558.2539261618168 51.905 0.4813 51.905 51.622 52.103 0 53 21 4 0 0 0 0.0093042 2 28621 28621;28736 88.954 63.555 1 35130000 51205 7155 34630 35418 59518;59519 59518 -0.05956332041364476 QYGGDLTNTF 10 Unmodified _QYGGDLTNTF_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2521362304688 2 558.253828 1114.4931 1.0993 0.00061371 -0.69472 -0.00038783 0.40462 0.00022588 558.2529714953617 60.261 0.43617 54.147 53.921 54.357 -6.1147 56 22 3 0 0 0 0.074936 2 38723 38723;38864 52.268 37.43 1 70658000 51206 7155 34630 35418 59520;59521 59520 -0.05956332041364476 QYGHLFDKI 9 Unmodified _QYGHLFDKI_ 0 0 0 ENST00000496637.6_1_10:28342996-28348461:-|nuORF;ENSG00000150054|ENST00000683449|MPP7 ENST00000496637.6_1_10:28342996-28348461:-|nuORF ENST00000496637.6_1_10:28342996-28348461:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.197998046875 3 374.197708 1119.57129 0.67334 0.00025196 -0.32344 -0.00012103 0.3499 0.00013093 374.1974968512814 47.128 0.1557 46.791 46.72 46.876 -0.33664 13 7 2 0 0 0 0.2289 1 25270 25270 20.581 11.605 1 3012300 51207 6049 34631 35419 59522 59522 0.01629145334572968 QYGKNFFRI 9 Unmodified _QYGKNFFRI_ 0 0 0 ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5447082519531 3 391.545219 1171.61383 0.23789 9.3146E-05 0.071836 2.8127E-05 0.30973 0.00012127 391.54517124068394 48.426 0.2934 48.382 48.261 48.555 -0.04369 40 14 3 0 0 0 0.18144 1 26099 26099 24.991 16.835 1 13598000 51208 5429 34632 35420 59523 59523 0.0348854046278575 QYGKNFFRI 9 Unmodified _QYGKNFFRI_ 0 0 0 ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE ENSG00000142599|ENST00000400908|RERE MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5337524414062 3 391.545219 1171.61383 1.1536 0.0004517 0.19934 7.805E-05 1.353 0.00052975 391.5450957824938 52.993 0.26476 47.189 47.085 47.35 -5.8042 19 14 2 0 0 0 0.062454 2 33411 33411;33537 41.956 20.365 1 23906000 51209 5429 34632 35420 59524;59525 59524 0.0348854046278575 QYGKPDQYYF 10 Unmodified _QYGKPDQYYF_ 0 0 0 REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.867919921875 3 436.868027 1307.58225 0.53629 0.00023429 -0.178 -7.7762E-05 0.35829 0.00015653 436.8678279843549 52.353 0.25424 51.919 51.749 52.003 -0.43367 38 12 4 0 0 0 0.44373 1 28247 28247 16.566 7.0219 1 12982000 + 51210 24813 34633 35421 59526 59526 -0.05923497081835194 QYGKPDQYYF 10 Unmodified _QYGKPDQYYF_ 0 0 0 REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 436.868027 1307.58225 0.53629 0.00023429 -0.178 -7.7762E-05 0.35829 0.00015653 436.8678279843549 52.353 0.25424 51.919 51.749 52.003 -0.43367 -0.02172 0.00012584 NaN 16.566 38 12 4 NaN NaN NaN NaN 0 NaN NaN 0 12982000 + 51211 24813 34633 35421 -0.05923497081835194 QYGKPDQYYF 10 Unmodified _QYGKPDQYYF_ 0 0 0 REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF REV__ENST00000230771.7_1_5:140071223-140073536:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 436.868027 1307.58225 0.54962 0.00024011 -1.0779 -0.0004709 -0.52828 -0.00023079 436.86705756292116 52.021 0.15035 51.962 51.854 52.005 -0.058918 0.02172 -0.0010536 NaN 16.566 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2192400 + 51212 24813 34633 35421 -0.05923497081835194 QYGSALAHFF 10 Unmodified _QYGSALAHFF_ 0 0 0 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7781982421875 2 570.777274 1139.53999 0.74958 0.00042784 0.43349 0.00024743 1.1831 0.00067527 570.7779625732979 70.483 0.27746 70.518 70.358 70.636 0.035507 27 12 3 0 0 0 0.18088 1 38806 38806 36.044 19.102 1 1503800 51213 8041 34634 35422 59527 59527 -0.02419427699555854 QYGTFCEKF 9 Carbamidomethyl (C) _QYGTFC(Carbamidomethyl (C))EKF_ QYGTFC(1)EKF QYGTFC(53)EKF 0 1 0 ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENSG00000181523|ENST00000326317|SGSH;ENST00000575282.5_1_17:78187814-78194112:-|nuORF ENST00000570923.1_1_17:78185753-78194107:-|nuORF;ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7630615234375 2 590.260599 1178.50665 1.0098 0.00059602 -0.30744 -0.00018147 0.70231 0.00041455 590.2604596529778 50.133 0.61511 44.594 44.299 44.914 -5.5391 147 39 5 0 0 0 0.033587 2 31286 31286;31424 53.404 35.031 1 342530000 51214 8977;15483 34635 35423 59528;59529 59528 845 -0.0754679753374603 QYGTISHGI 9 Unmodified _QYGTISHGI_ 0 0 0 nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF;nc|ENSG00000084234|Q06481-5|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 nc|ENSG00000084234|Q06481-4|APLP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2502746582031 2 488.248349 974.482145 0.54203 0.00026464 -0.35012 -0.00017095 0.19191 9.3698E-05 488.24853336981784 36.278 0.27057 32.086 31.914 32.185 -4.1928 20 15 2 0 0 0 0.031062 1 21165 21165 54.774 20.671 1 10376000 51215 1387 34636 35424 59530 59530 -0.0061168962496367385 QYGYRCLQF 9 Unmodified _QYGYRCLQF_ 0 0 0 REV__nc|ENSG00000257335|O43451-1|MGAM REV__nc|ENSG00000257335|O43451-1|MGAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1880493164062 3 393.186814 1176.53861 1.2374 0.00048652 -1.3694 -0.00053842 -0.13199 -5.1897E-05 393.18641238712627 34.973 0.28826 30.878 30.718 31.007 -4.0951 27 16 3 0 0 0 0.39863 1 20252 20252 8.1555 0 1 5424000 + 51216 24564 34637 35425 59531 59531 -0.04259385059935994 QYHFVFNNF 9 Unmodified _QYHFVFNNF_ 0 0 0 nc|ENSG00000225830|P0DP91|ERCC6 nc|ENSG00000225830|P0DP91|ERCC6 nc|ENSG00000225830|P0DP91|ERCC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.2839965820312 2 608.282723 1214.55089 0.55631 0.00033839 -0.86963 -0.00052898 -0.31332 -0.00019059 608.2819414790125 69.325 0.24254 69.356 69.166 69.409 0.030914 18 11 2 0 0 0 0.036857 1 38079 38079 67.344 29.37 1 8545400 51217 16552 34638 35426 59532 59532 -0.04780025325248971 QYHLQQLFYRY 11 Unmodified _QYHLQQLFYRY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 779.8912353515625 2 779.8937 1557.77285 -0.007856 -6.1268E-06 0.16241 0.00012666 0.15455 0.00012053 779.8936609837268 78.439 0.4027 78.439 78.313 78.716 0 31 19 3 0 0 0 0.74203 2 43560 43560;43676 0.30703 0 1 702380 51218 5324 34639 35427 59533;59534 59533 0.01627209300272625 QYHLQQLFYRY 11 Unmodified _QYHLQQLFYRY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 779.8937 1557.77285 -0.067387 -5.2555E-05 -1.5388 -0.0012001 -1.6062 -0.0012527 779.8926776858589 78.898 0.18256 78.412 78.323 78.506 -0.48596 -0.013325 -0.002068 NaN 0.30703 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 555450 51219 5324 34639 35427 0.01627209300272625 QYHLQSNEF 9 Unmodified _QYHLQSNEF_ 0 0 0 nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1;ENST00000489994.5_1_7:112107978-112115571:+|nuORF nc|ENSG00000288640|O00458-2|IFRD1 nc|ENSG00000288640|O00458-2|IFRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2677612304688 2 583.26727 1164.51999 0.10674 6.2255E-05 0.23142 0.00013498 0.33815 0.00019723 583.2674547908518 37.775 0.3009 37.775 37.604 37.905 0 45 14 4 0 0 0 0.024882 2 20082 20082;20194 58.679 28.042 1 36029000 51220 344 34640 35428 59535;59536 59535 -0.05569223430143211 QYHLQSNEF 9 Unmodified _QYHLQSNEF_ 0 0 0 nc|ENSG00000288640|O00458-2|IFRD1;ENSG00000006652|ENST00000403825|IFRD1;ENST00000489994.5_1_7:112107978-112115571:+|nuORF nc|ENSG00000288640|O00458-2|IFRD1 nc|ENSG00000288640|O00458-2|IFRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2672729492188 2 583.26727 1164.51999 0.99519 0.00058046 -0.39444 -0.00023006 0.60075 0.0003504 583.2669509948926 42.562 0.40751 37.878 37.648 38.055 -4.6846 72 27 3 0 0 0 0.008678 2 25608 25608;25743 88.904 54.635 1 48310000 51221 344 34640 35428 59537;59538 59537 -0.05569223430143211 QYHTLQAGF 9 Unmodified _QYHTLQAGF_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;ENST00000533069.1_1_11:394244-396720:+|nuORF nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7615966796875 2 532.761623 1063.50869 0.45992 0.00024503 0.79807 0.00042518 1.258 0.00067021 532.7618694709421 40.405 0.25632 40.108 39.963 40.22 -0.29716 28 11 3 0 0 0 0.0088174 1 21347 21347 103.75 53.815 1 7754700 51222 9250 34641 35429 59539 59539 -0.020520007336244817 QYHTLQAGF 9 Unmodified _QYHTLQAGF_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3;ENST00000533069.1_1_11:394244-396720:+|nuORF nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7638549804688 2 532.761623 1063.50869 0.43406 0.00023125 0.012116 6.4551E-06 0.44618 0.00023771 532.7618157742714 45.087 0.42709 40.235 39.959 40.387 -4.852 46 27 2 0 0 0 0.0026776 2 27535 27535;27687 128.37 60.285 1 29441000 51223 9250 34641 35429 59540;59541 59540 -0.020520007336244817 QYIATGTL 8 Unmodified _QYIATGTL_ 0 0 0 REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7345275878906 2 433.734543 865.454533 -0.27622 -0.00011981 0.85289 0.00036993 0.57667 0.00025012 433.7349380678543 33.589 0.45272 33.429 33.247 33.7 -0.15918 45 18 4 0 0 0 0.74163 1 17587 17587 13.508 0 1 6915000 + 51224 20278 34642 35430 59542 59542 0.016424071148321673 QYIDCFQKI 9 Carbamidomethyl (C) _QYIDC(Carbamidomethyl (C))FQKI_ QYIDC(1)FQKI QYIDC(140)FQKI 0 1 0 nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7976684570312 2 607.797349 1213.58014 0.40163 0.00024411 -0.11374 -6.9132E-05 0.28789 0.00017498 607.7973701541353 57.812 0.3306 51.785 51.592 51.923 -6.0275 34 18 2 0 0 0 0.0014462 1 36900 36900 136.39 90.693 1 46615000 51225 10144 34643 35431 59543 59543 918 -0.018102490912724534 QYIDKLNAL 9 Unmodified _QYIDKLNAL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3013916015625 2 539.300581 1076.58661 0.58411 0.00031501 0.042291 2.2807E-05 0.6264 0.00033782 539.3004960848216 49.824 0.33833 49.824 49.671 50.009 0 35 15 3 0 0 0 0.070838 1 27434 27434 39.957 1.9833 1 10024000 51226 490 34644 35432 59544 59544 0.05138012131760661 QYIDKLNAL 9 Unmodified _QYIDKLNAL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3007202148438 2 539.300581 1076.58661 0.70519 0.00038031 3.1528 0.0017003 3.858 0.0020806 539.3007663797437 50.286 0.23929 49.893 49.732 49.971 -0.3923 37 11 4 0 0 0 0.042911 1 27093 27093 48.346 8.3885 1 6856100 51227 490 34644 35432 59545 59545 0.05138012131760661 QYIDKLNAL 9 Unmodified _QYIDKLNAL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3010864257812 2 539.300581 1076.58661 0.59235 0.00031945 0.051207 2.7616E-05 0.64356 0.00034707 539.3000114368568 56.427 0.34866 50.45 50.25 50.599 -5.9769 42 19 3 0 0 0 0.07916 1 35940 35940 37.974 7.3375 1 38408000 51228 490 34644 35432 59546 59546 0.05138012131760661 QYIDVSHVF 9 Unmodified _QYIDVSHVF_ 0 0 0 ENST00000588021.5_1_19:6007990-6026242:-|nuORF;nc|ENSG00000087903|P48378-2|RFX2;ENSG00000087903|ENST00000303657|RFX2 ENST00000588021.5_1_19:6007990-6026242:-|nuORF ENST00000588021.5_1_19:6007990-6026242:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.277099609375 2 554.277106 1106.53966 0.50644 0.00028071 -0.34731 -0.0001925 0.15913 8.8205E-05 554.7778487828112 63.371 0.2443 62.885 62.771 63.016 -0.48617 17 10 2 0 0 0 0.14602 1 34583 34583 28.487 12.719 1 1505500 51229 15641 34645 35433 59547 59547 -0.009348474193984657 QYIEELQKF 9 Unmodified _QYIEELQKF_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8143310546875 2 599.311146 1196.60774 0.6763 0.00040531 -0.04043 -2.423E-05 0.63587 0.00038108 599.3112416970712 54.388 0.35575 54.388 54.197 54.553 0 42 15 4 0 0 0 0.01085 1 30176 30176 85.642 45.684 1 14566000 51230 3203 34646 35434 59548 59548 0.017299774405728385 QYIEELQKF 9 Unmodified _QYIEELQKF_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3107299804688 2 599.311146 1196.60774 0.25184 0.00015093 -0.3679 -0.00022049 -0.11606 -6.9553E-05 599.3107335981807 55.02 0.25948 54.542 54.369 54.629 -0.47798 31 12 3 0 0 0 0.02676 1 29804 29804 61.602 37.581 1 5707700 51231 3203 34646 35434 59549 59549 0.017299774405728385 QYIEELQKF 9 Unmodified _QYIEELQKF_ 0 0 0 nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3110961914062 2 599.311146 1196.60774 0.50746 0.00030413 -0.21335 -0.00012786 0.29411 0.00017626 599.3112468866688 61.011 0.44907 54.863 54.726 55.175 -6.1478 31 23 2 0 0 0 0.0081563 1 39290 39290 110.79 65.053 1 39983000 51232 3203 34646 35434 59550 59550 0.017299774405728385 QYIETERFW 9 Unmodified _QYIETERFW_ 0 0 0 REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3076171875 2 636.306395 1270.59824 -0.20128 -0.00012808 0.58017 0.00036917 0.37889 0.00024109 636.3082687147917 53.9 0.61366 53.833 53.609 54.223 -0.066936 81 34 4 0 0 0 0.30562 1 29202 29202 16.942 1.6938 1 5447900 + 51233 18575 34647 35435 59551 59551 -0.026237908449274983 QYIKAVKKI 9 Unmodified _QYIKAVKKI_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152;nc|ENSG00000103995|O94986-1|CEP152;nc|ENSG00000103995|O94986-2|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MSMS AL20221201_MKP_PDAC_01 4 364.2373657226562 3 364.237615 1089.69102 NaN NaN NaN NaN NaN NaN NaN 22.951 1 20.173 19.673 20.673 -2.7784 0 0 0 0.51965 1 12386 12386 15.248 8.6181 1 51234 2170 34648 35436 59552 59552 0.14975758679133833 QYIKFISETL 10 Unmodified _QYIKFISETL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3429565429688 2 621.342446 1240.67034 0.64816 0.00040273 -0.85062 -0.00052853 -0.20246 -0.0001258 621.3417720177305 67.925 0.25858 67.442 67.299 67.558 -0.48218 29 11 3 0 0 0 0.44373 1 37107 37107 19.257 2.3147 1 3440700 51235 16412 34649 35437 59553 59553 0.05963123508809076 QYIKFISETL 10 Unmodified _QYIKFISETL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 621.342446 1240.67034 0.58354 0.00036258 -0.34457 -0.00021409 0.23897 0.00014848 621.8439133227546 67.417 0.17616 67.435 67.318 67.494 0.018036 -0.0037342 0.00038662 NaN 19.257 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2196100 51236 16412 34649 35437 0.05963123508809076 QYILFPLRF 9 Unmodified _QYILFPLRF_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8453979492188 2 598.844959 1195.67537 0.62625 0.00037503 0.1974 0.00011821 0.82365 0.00049324 598.8449787758615 100.26 0.3187 94.08 93.838 94.157 -6.1757 66 19 5 0 0 0 0.0083938 2 66893 66893;67043 108 70.023 1 1778599999.9999998 51237 1960 34650 35438 59554;59555 59554 0.08535472162066071 QYISYIPQI 9 Unmodified _QYISYIPQI_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8026123046875 2 562.802957 1123.59136 1.2203 0.0006868 -1.0096 -0.00056818 0.21077 0.00011862 562.8028668485304 87.266 0.49041 81.09 80.806 81.296 -6.1757 43 26 3 0 0 0 0.0086722 1 57479 57479 88.954 50.98 1 13457000 51238 7770 34651 35439 59556 59556 0.03450896274512161 QYKGMFDTL 9 Oxidation (M) _QYKGM(Oxidation (M))FDTL_ QYKGM(1)FDTL QYKGM(92)FDTL 0 0 1 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7636108398438 2 559.762975 1117.5114 0.021601 1.2091E-05 0.3239 0.00018131 0.34551 0.0001934 559.7631194393052 40.633 0.26721 40.633 40.491 40.758 0 37 14 3 0 0 0 0.0082661 1 21825 21825 92.491 44.743 1 9534400 51239 7265 34652 35440 59557 59557 1258 -0.04265913390986498 QYKGMFDTL 9 Oxidation (M) _QYKGM(Oxidation (M))FDTL_ QYKGM(1)FDTL QYKGM(46)FDTL 0 0 1 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MSMS AL20221201_MKP_PDAC_01 4 559.76416015625 2 559.762975 1117.5114 NaN NaN NaN NaN NaN NaN NaN 45.642 1 40.687 40.187 41.187 -4.9549 0 0 0 0.08978 1 28058 28058 46.021 19.137 1 51240 7265 34652 35440 59558 59558 1258 -0.04265913390986498 QYKGMFDTL 9 Oxidation (M) _QYKGM(Oxidation (M))FDTL_ 0 0 1 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.762975 1117.5114 0.56543 0.00031651 0.39805 0.00022282 0.96349 0.00053932 559.7631964451981 40.949 0.21626 40.646 40.502 40.718 -0.30304 0.0067233 5.5305E-05 NaN 92.491 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2277500 51241 7265 34652 35440 1258 -0.04265913390986498 QYKHLSELL 9 Unmodified _QYKHLSELL_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5448913574219 3 377.544996 1129.61316 0.50853 0.00019199 -0.14054 -5.3061E-05 0.36798 0.00013893 377.54495332455417 42.465 0.22523 42.465 42.318 42.544 0 18 10 2 0 0 0 0.32235 1 22982 22982 16.149 4.6312 1 3766500 51242 3178 34653 35441 59559 59559 0.05353701023091162 QYKHLSELL 9 Unmodified _QYKHLSELL_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5452270507812 3 377.544996 1129.61316 0.097768 3.6912E-05 -0.09266 -3.4983E-05 0.0051079 1.9285E-06 377.54494097142776 42.614 0.1956 42.307 42.238 42.434 -0.30682 14 8 2 0 0 0 0.05483 1 22660 22660 43.772 19.983 1 8639100 51243 3178 34653 35441 59560 59560 0.05353701023091162 QYKHLSELL 9 Unmodified _QYKHLSELL_ 0 0 0 ENSG00000115947|ENST00000392857|ORC4;ENST00000495601.1_1_2:148716324-148733527:-|nuORF ENSG00000115947|ENST00000392857|ORC4 ENSG00000115947|ENST00000392857|ORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8134765625 2 565.813856 1129.61316 0.26362 0.00014916 -0.39534 -0.00022369 -0.13172 -7.4531E-05 565.8132249748572 42.647 0.1492 42.34 42.258 42.408 -0.30682 9 6 2 0 0 0 0.062454 1 22687 22687 37.974 14.826 1 5021500 51244 3178 34653 35441 59561 59561 0.05353701023091162 QYKHQMLH 8 Unmodified _QYKHQMLH_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.771484375 2 542.771468 1083.52838 -0.45765 -0.0002484 1.1879 0.00064474 0.73022 0.00039634 542.7721885288445 14.48 0.027922 14.48 14.47 14.497 0 9 5 2 0 0 0 0.80975 1 6893 6893 0.79363 0 1 491110 51245 16152 34654 35442 59562 59562 -0.010039479945135099 QYKITTTT 8 Unmodified _QYKITTTT_ 0 0 0 REV__ENST00000416893.2_1_X:82253937-82254204:+|nuORF REV__ENST00000416893.2_1_X:82253937-82254204:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2584838867188 2 478.258382 954.502212 NaN NaN NaN NaN NaN NaN NaN 17.249 1 17.263 16.763 17.763 0.013865 0 0 0 0.97444 1 8562 8562 0.79363 0 1 + 51246 26783 34655 35443 59563 59563 0.023140613149735145 QYKKWTSYLHL 11 Unmodified _QYKKWTSYLHL_ 0 0 0 REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.4501953125 4 367.450223 1465.77178 0.78609 0.00028885 -0.22733 -8.3531E-05 0.55876 0.00020532 367.45018396899616 14.531 0.31137 12.028 11.871 12.183 -2.5029 145 56 4 0 0 0 0.73114 1 7427 7427 1.3296 0 1 13030000 + 51247 22443 34656 35444 59564 59564 0.05752994931390276 QYKLIVKIYT 10 Unmodified _QYKLIVKIYT_ 0 0 0 REV__ENST00000564781.1_1_16:68057459-68071937:+|nuORF REV__ENST00000564781.1_1_16:68057459-68071937:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.88671875 2 634.884281 1267.75401 NaN NaN NaN NaN NaN NaN NaN 82.241 1 82.303 81.803 82.803 0.062004 0 0 0 0.9997 1 45493 45493 1.6526 1.1943 1 + 51248 28900 34657 35445 59565 59565 0.13084279676513688 QYKLVSDTI 9 Unmodified _QYKLVSDTI_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.794677734375 2 533.792589 1065.57063 -0.01403 -7.489E-06 -0.11995 -6.4031E-05 -0.13398 -7.152E-05 533.79284572139 45.237 0.21067 45.237 45.095 45.306 0 22 10 3 0 0 0 0.087258 1 24628 24628 36.044 3.9272 1 8483400 51249 4022;16177 34658 35446 59566 59566 0.04046305894848956 QYKVDYTL 8 Unmodified _QYKVDYTL_ 0 0 0 nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF nc|ENSG00000167202|Q9UPU7-2|TBC1D2B nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2669067382812 2 515.266207 1028.51786 0.43649 0.00022491 -1.5785 -0.00081333 -1.142 -0.00058842 515.2647975752092 46.357 0.21599 41.277 41.115 41.331 -5.0805 19 14 2 0 0 0 0.57045 1 28614 28614 28.487 10.352 1 9609500 51250 7585 34659 35447 59567 59567 0.004743478320506256 QYLAAVRKF 9 Unmodified _QYLAAVRKF_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8827514648438 3 365.881831 1094.62366 2.3254 0.00085082 -0.90519 -0.00033119 1.4202 0.00051962 365.8816510916931 41.735 0.40546 37.127 36.923 37.329 -4.6079 57 25 4 0 0 0 0.036857 2 25072 25072;25215 51.63 36.792 1 21109000 51251 3266 34660 35448 59568;59569 59568 0.0801372846817685 QYLAAVRKF 9 Unmodified _QYLAAVRKF_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 365.881831 1094.62366 -0.23923 -8.7528E-05 -0.71085 -0.00026009 -0.95008 -0.00034762 366.21560272786 37.179 0.34561 37.201 37.005 37.35 0.021545 0.036715 0.00013146 NaN 51.63 38 15 4 NaN NaN NaN NaN 0 NaN NaN 0 14408000 51252 3266 34660 35448 0.0801372846817685 QYLAQHEHL 9 Unmodified _QYLAQHEHL_ 0 0 0 ENST00000491618.1_1_20:32210926-32212581:+|nuORF;nc|ENSG00000078699|O43439-3|CBFA2T2;nc|ENSG00000078699|O43439-2|CBFA2T2;ENSG00000078699|ENST00000342704|CBFA2T2;nc|ENSG00000078699|O43439|CBFA2T2;nc|ENSG00000078699|O43439-4|CBFA2T2 ENST00000491618.1_1_20:32210926-32212581:+|nuORF ENST00000491618.1_1_20:32210926-32212581:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.1930236816406 3 380.192845 1137.55671 NaN NaN NaN NaN NaN NaN NaN 28.648 1 25.5 25 26 -3.1482 0 0 0 0.18753 1 16000 16000 29.841 14.592 1 51253 1251 34661 35449 59570 59570 -0.0065692681357631955 QYLDALKTL 9 Unmodified _QYLDALKTL_ 0 0 0 nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-4|PIGG;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-6|PIGG;ENST00000507493.1_1_4:514867-515974:+|nuORF nc|ENSG00000174227|Q5H8A4-2|PIGG nc|ENSG00000174227|Q5H8A4-2|PIGG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.803466796875 2 532.802957 1063.59136 NaN NaN NaN NaN NaN NaN NaN 63.229 1 62.743 62.243 63.243 -0.48617 0 0 0 0.15231 1 34481 34481 36.506 5.8697 1 51254 8402 34662 35450 59571 59571 0.062108962745242025 QYLDEIQTL 9 Unmodified _QYLDEIQTL_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7860717773438 2 561.787504 1121.56045 0.29297 0.00016459 -0.57536 -0.00032323 -0.28239 -0.00015864 561.7869532145813 65.55 0.2152 65.55 65.503 65.718 0 19 8 3 0 0 0 0.06187 1 36573 36573 42.095 21.641 1 1664100 51255 10127 34663 35451 59572 59572 0.0045369816962193 QYLDKLKQL 9 Unmodified _QYLDKLKQL_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000493216.1_1_22:20937386-20937681:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MSMS AL20221201_MKP_PDAC_01 4 383.5614929199219 3 383.560646 1147.66011 NaN NaN NaN NaN NaN NaN NaN 51.241 1 45.592 45.092 46.092 -5.649 0 0 0 0.17147 1 32232 32232 34.222 12.632 1 51256 1720 34664 35452 59573 59573 0.09218560574208823 QYLDNLLVRF 10 Unmodified _QYLDNLLVRF_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8554077148438 2 640.853512 1279.69247 1.3383 0.00085763 0.65366 0.0004189 1.9919 0.0012765 640.8537402597054 98.325 0.13343 92.149 92.072 92.206 -6.1757 13 8 2 0 0 0 4.0285E-07 1 65218 65218 137.42 100.92 1 27065000 51257 3604 34665 35453 59574 59574 0.06381347977230689 QYLDRAEKL 9 Unmodified _QYLDRAEKL_ 0 0 0 ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2093505859375 3 379.208384 1134.60332 1.9059 0.00072275 -0.58619 -0.00022229 1.3197 0.00050046 379.20830169737945 33.903 0.41904 29.918 29.714 30.133 -3.9853 46 22 3 0 0 0 0.094149 2 19448 19448;19572 38.615 20.242 1 31857000 51258 4427 34666 35454 59575;59576 59575 0.04140513017705416 QYLDRAEKL 9 Unmodified _QYLDRAEKL_ 0 0 0 ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A ENSG00000132612|ENST00000254950|VPS4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 379.208384 1134.60332 -0.55495 -0.00021044 -0.58828 -0.00022308 -1.1432 -0.00043352 379.2080838544385 29.774 0.33073 29.774 29.643 29.974 0 -0.0721 -1.0953E-06 NaN 38.615 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 11027000 51259 4427 34666 35454 0.04140513017705416 QYLDSHPFL 9 Unmodified _QYLDSHPFL_ 0 0 0 ENSG00000011638|ENST00000233047|LDAF1;nc|ENSG00000011638|Q96B96-2|LDAF1 ENSG00000011638|ENST00000233047|LDAF1 ENSG00000011638|ENST00000233047|LDAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2764282226562 2 560.277106 1118.53966 0.54089 0.00030305 0.31837 0.00017838 0.85927 0.00048143 560.2770232394521 57.89 0.26729 57.4 57.31 57.577 -0.48974 27 12 3 0 0 0 0.10247 1 31461 31461 44.407 17.523 1 4801900 51260 454 34667 35455 59577 59577 -0.014868474193917791 QYLDVLHAL 9 Unmodified _QYLDVLHAL_ 0 0 0 ENST00000607532.5_1_6:13307806-13327130:-|nuORF;ENSG00000145979|ENST00000379300|TBC1D7;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7 ENST00000607532.5_1_6:13307806-13327130:-|nuORF ENST00000607532.5_1_6:13307806-13327130:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2954711914062 2 536.295299 1070.57605 0.35965 0.00019288 0.35312 0.00018938 0.71277 0.00038226 536.2955154723018 75.279 0.24622 75.279 75.168 75.415 0 17 10 2 0 0 0 0.49272 1 41895 41895 7.9102 0.62092 1 578020 51261 5742 34668 35456 59578 59578 0.043580294773164496 QYLDVLHAL 9 Unmodified _QYLDVLHAL_ 0 0 0 ENST00000607532.5_1_6:13307806-13327130:-|nuORF;ENSG00000145979|ENST00000379300|TBC1D7;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-4|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7 ENST00000607532.5_1_6:13307806-13327130:-|nuORF ENST00000607532.5_1_6:13307806-13327130:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2963256835938 2 536.295299 1070.57605 0.52495 0.00028153 -0.11344 -6.0839E-05 0.41151 0.00022069 536.2950350286475 75.716 0.33302 75.239 75.062 75.395 -0.47714 35 14 3 0 0 0 0.078417 2 41410 41410;41511 38.151 22.304 1 4486100 51262 5742 34668 35456 59579;59580 59579 0.043580294773164496 QYLEAHDRL 9 Unmodified _QYLEAHDRL_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF;nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1965026855469 3 382.196367 1143.56727 1.2099 0.0004624 -0.16133 -6.1659E-05 1.0485 0.00040074 382.19638129258504 31.939 0.14646 28.243 28.175 28.322 -3.6958 10 7 2 0 0 0 0.35911 1 18172 18172 14.218 6.6092 1 5285200 51263 14844 34669 35457 59581 59581 0.001230558408451543 QYLECPQYL 9 Carbamidomethyl (C) _QYLEC(Carbamidomethyl (C))PQYL_ QYLEC(1)PQYL QYLEC(89)PQYL 0 1 0 ENSG00000198917|ENST00000361256|SPOUT1;ENST00000466556.5_1_9:131588609-131591411:-|nuORF ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7842407226562 2 607.281531 1212.54851 0.16257 9.8729E-05 -2.7427 -0.0016656 -2.5801 -0.0015669 607.2795305400911 66.703 0.33035 60.528 60.298 60.628 -6.1757 31 18 2 0 0 0 0.008678 1 43410 43410 88.904 64.883 1 34334000 51264 10196 34670 35458 59582 59582 922 -0.049262418452372 QYLEHASKY 9 Unmodified _QYLEHASKY_ 0 0 0 ENSG00000182400|ENST00000330149|TRAPPC6B ENSG00000182400|ENST00000330149|TRAPPC6B ENSG00000182400|ENST00000330149|TRAPPC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1895446777344 3 380.189101 1137.54547 -0.46073 -0.00017516 1.6065 0.00061077 1.1458 0.00043561 380.18982424305915 20.252 0.14703 20.252 20.195 20.342 0 14 9 2 0 0 0 0.54213 1 10183 10183 4.897 2.9906 1 747240 51265 9052 34671 35459 59583 59583 -0.017797489077111095 QYLEHILGF 9 Unmodified _QYLEHILGF_ 0 0 0 ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2957763671875 2 560.295299 1118.57605 -0.29661 -0.00016619 0.81293 0.00045548 0.51633 0.00028929 560.295823614638 78.23 0.27823 77.744 77.632 77.911 -0.48596 31 11 4 0 0 0 0.06187 1 42830 42830 42.095 16.695 1 2945200 51266 10557 34672 35460 59584 59584 0.02150029477343196 QYLEHILGF 9 Unmodified _QYLEHILGF_ 0 0 0 ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A ENSG00000221909|ENST00000449309|FAM200A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2952270507812 2 560.295299 1118.57605 0.58853 0.00032975 -1.2381 -0.00069369 -0.64954 -0.00036394 560.2944146280399 77.736 0.23622 77.788 77.607 77.843 0.052452 14 9 2 0 0 0 0.019303 1 42908 42908 64.236 28.192 1 3936500 51267 10557 34672 35460 59585 59585 0.02150029477343196 QYLELAHSL 9 Unmodified _QYLELAHSL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.284423828125 2 537.284931 1072.55531 -0.21147 -0.00011362 0.16783 9.0174E-05 -0.04364 -2.3447E-05 537.2848849715656 56.119 0.33036 56.119 55.953 56.284 0 45 15 4 0 0 0 0.0082281 2 31248 31148;31248 92.822 45.073 1 50062000 51268 6769 34673 35461 59586;59587 59587 0.021934390976412033 QYLELAHSL 9 Unmodified _QYLELAHSL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2845458984375 2 537.284931 1072.55531 -0.7243 -0.00038916 0.66874 0.0003593 -0.055558 -2.985E-05 537.2850366095279 56.549 0.40833 56.063 55.941 56.349 -0.48554 63 30 3 0 0 0 0.00856 2 30773 30666;30773 100.37 52.623 1 62136000 51269 6769 34673 35461 59588;59589 59589 0.021934390976412033 QYLELAHSL 9 Unmodified _QYLELAHSL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2852783203125 2 537.284931 1072.55531 0.66888 0.00035938 -0.8707 -0.00046782 -0.20183 -0.00010844 537.2848560979444 62.255 1.3153 56.079 55.404 56.719 -6.1757 90 70 2 0 0 0 0.0067112 4 40195 40061;40195;40327;40471 112.59 64.845 1 221170000 51270 6769 34673 35461 59590;59591;59592;59593 59591 0.021934390976412033 QYLENLEKL 9 Unmodified _QYLENLEKL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.8128051757812 2 575.311146 1148.60774 0.03892 2.2391E-05 -0.28672 -0.00016495 -0.2478 -0.00014256 575.3109223650747 56.311 0.42732 56.311 56.115 56.543 0 58 19 5 0 0 0 0.0093064 2 31258 31258;31367 83.429 31.799 1 36511000 51271 6500 34674 35462 59594;59595 59594 0.03937977440614304 QYLENLEKL 9 Unmodified _QYLENLEKL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3128051757812 2 575.311146 1148.60774 -0.076744 -4.4152E-05 1.7409 0.0010015 1.6641 0.00095738 575.3123587981737 56.783 0.20351 56.297 56.186 56.39 -0.48554 22 9 3 0 0 0 0.05483 1 30868 30868 43.772 1.8168 1 2412100 51272 6500 34674 35462 59596 59596 0.03937977440614304 QYLENLEKL 9 Unmodified _QYLENLEKL_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;ENST00000309865.11_1_16:22482951-22501641:+|nuORF;ENST00000523028.5_1_16:21892164-21910369:-|nuORF;ENST00000540706.5_1_16:21899129-21899858:-|nuORF ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3135986328125 2 575.311146 1148.60774 1.9806 0.0011394 -0.052295 -3.0086E-05 1.9283 0.0011094 575.3112162533632 62.824 0.47845 56.648 56.398 56.877 -6.1757 53 23 3 0 0 0 0.0087224 2 40491 40491;40625 107.1 47.026 1 44014000 51273 6500 34674 35462 59597;59598 59597 0.03937977440614304 QYLEQSSKL 9 Unmodified _QYLEQSSKL_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2880249023438 2 548.287671 1094.56079 -0.16058 -8.8042E-05 1.6347 0.00089628 1.4741 0.00080824 548.2880931794527 31.802 0.23893 31.802 31.681 31.92 0 21 11 2 0 0 0 0.0081887 1 16553 16553 93.166 51.071 1 11405000 51274 8565 34675 35463 59599 59599 0.017291178894765835 QYLEQSSKL 9 Unmodified _QYLEQSSKL_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MSMS AL20221201_MKP_PDAC_01 4 548.2894287109375 2 548.287671 1094.56079 NaN NaN NaN NaN NaN NaN NaN 36.188 1 31.995 31.495 32.495 -4.1928 0 0 0 0.020269 1 21107 21107 117.76 46.627 1 51275 8565 34675 35463 59600 59600 0.017291178894765835 QYLEQSSKL 9 Unmodified _QYLEQSSKL_ 0 0 0 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 ENSG00000176102|ENST00000323959|CSTF3 MSMS AL20221201_MKP_PDAC_01 4 548.2855834960938 2 548.287671 1094.56079 NaN NaN NaN NaN NaN NaN NaN 36.426 1 32.233 31.733 32.733 -4.1928 0 0 0 0.023462 1 21270 21270 74.2 28.179 1 51276 8565 34675 35463 59601 59601 0.017291178894765835 QYLERLKQF 9 Unmodified _QYLERLKQF_ 0 0 0 nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ENSG00000136379|ENST00000258884|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2301940917969 3 408.896029 1223.66626 -0.087134 -3.5629E-05 0.53583 0.0002191 0.44869 0.00018347 408.8961717966869 42.228 0.21688 42.219 42.123 42.34 -0.0088196 19 9 3 0 0 0 0.06294 1 22610 22610 38.615 3.6827 1 13176000 51277 16214 34676 35464 59602 59602 0.0633707880572274 QYLERLKQF 9 Unmodified _QYLERLKQF_ 0 0 0 nc|ENSG00000136379|Q6PCB6-2|ABHD17C;ENSG00000107362|ENST00000333421|ABHD17B;nc|ENSG00000107362|Q5VST6-2|ABHD17B;ENSG00000136379|ENST00000258884|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C nc|ENSG00000136379|Q6PCB6-2|ABHD17C MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.896240234375 3 408.896029 1223.66626 1.7317 0.00070807 0.15315 6.2621E-05 1.8848 0.00077069 408.8959160875285 47.77 0.34783 42.536 42.31 42.657 -5.2339 48 20 3 0 0 0 0.19127 1 29618 29618 28.495 3.5035 1 23686000 51278 16214 34676 35464 59603 59603 0.0633707880572274 QYLEYQQSL 9 Unmodified _QYLEYQQSL_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2860717773438 2 586.285128 1170.5557 0.68202 0.00039986 -0.050761 -2.9761E-05 0.63126 0.0003701 586.2851156273348 51.23 0.37868 51.23 51.014 51.393 0 38 17 4 0 0 0 0.031062 1 28232 28232 54.774 31.625 1 5764600 51279 5783 34677 35465 59604 59604 -0.02275185973144289 QYLGEDPKHH 10 Unmodified _QYLGEDPKHH_ 0 0 0 REV__ENSG00000187323|ENST00000442544|DCC REV__ENSG00000187323|ENST00000442544|DCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.7945556640625 2 612.293819 1222.57309 0.60972 0.00037333 -0.19746 -0.0001209 0.41226 0.00025242 612.2940833615306 48.92 0.24202 43.524 43.391 43.633 -5.3961 23 14 2 0 0 0 0.016642 1 30478 30478 78.728 24.895 1 24076000 + 51280 23632 34678 35466 59605 59605 -0.029298456474862178 QYLGQIQHI 9 Unmodified _QYLGQIQHI_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2994384765625 2 550.298373 1098.58219 0.37462 0.00020616 -0.040429 -2.2248E-05 0.3342 0.00018391 550.2982664255434 45.65 0.24043 45.65 45.527 45.768 0 42 11 5 0 0 0 0.0031966 1 24864 24864 125.62 63.052 1 17656000 51281 8629 34679 35467 59606 59606 0.03684547708849095 QYLGQIQHI 9 Unmodified _QYLGQIQHI_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2977294921875 2 550.298373 1098.58219 0.16685 9.1816E-05 0.09471 5.2119E-05 0.26156 0.00014393 550.2983809188107 45.902 0.2201 45.578 45.478 45.698 -0.32425 26 11 3 0 0 0 0.0031966 1 24536 24536 125.62 63.052 1 15978000 51282 8629 34679 35467 59607 59607 0.03684547708849095 QYLGQIQHI 9 Unmodified _QYLGQIQHI_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2987060546875 2 550.298373 1098.58219 0.78689 0.00043303 1.2167 0.00066953 2.0036 0.0011026 550.2990955450897 51.396 0.38864 45.747 45.572 45.96 -5.649 46 23 3 0 0 0 0.0083938 2 32422 32283;32422 108 36.075 1 105740000 51283 8629 34679 35467 59608;59609 59609 0.03684547708849095 QYLIKHHNI 9 Unmodified _QYLIKHHNI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2189636230469 3 389.220735 1164.64038 -0.39888 -0.00015525 -0.2319 -9.026E-05 -0.63078 -0.00024551 389.22062329554154 20.119 0.17763 20.147 20.024 20.201 0.028357 19 7 3 0 0 0 0.10247 1 10145 10145 32.786 11.196 1 2757900 51284 10770 34680 35468 59610 59610 0.0646422935415103 QYLIKHHNI 9 Unmodified _QYLIKHHNI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2213745117188 3 389.220735 1164.64038 0.025958 1.0103E-05 1.1209 0.00043627 1.1468 0.00044637 389.2210712471823 20.144 0.18953 20.154 20.046 20.236 0.010551 22 9 4 0 0 0 0.49766 1 10252 10252 7.609 4.8738 1 1308000 51285 10770 34680 35468 59611 59611 0.0646422935415103 QYLIKHHNI 9 Unmodified _QYLIKHHNI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5554809570312 3 389.220735 1164.64038 0.48272 0.00018788 0.1069 4.1608E-05 0.58962 0.00022949 389.2207864520111 23.31 0.402 20.531 20.388 20.79 -2.7784 96 32 4 0 0 0 0.078314 2 12561 12561;12666 38.176 21.063 1 55252000 51286 10770 34680 35468 59612;59613 59612 0.0646422935415103 QYLIKHHNI 9 Unmodified _QYLIKHHNI_ 0 0 0 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 ENSG00000254004|ENST00000523638|ZNF260 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.829833984375 2 583.327465 1164.64038 0.11778 6.8706E-05 0.12812 7.4737E-05 0.24591 0.00014344 583.3275794614136 23.308 0.19567 20.529 20.467 20.662 -2.7784 22 12 2 0 0 0 0.029718 1 12611 12611 61.357 13.609 1 4026400 51287 10770 34680 35468 59614 59614 0.0646422935415103 QYLIKTGYSF 10 Unmodified _QYLIKTGYSF_ 0 0 0 REV__nc|ENSG00000104325|Q16698-2|DECR1 REV__nc|ENSG00000104325|Q16698-2|DECR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8240356445312 2 610.321514 1218.62847 0.56468 0.00034464 0.88429 0.0005397 1.449 0.00088434 610.3223342373477 83.588 0.35459 83.09 82.864 83.219 -0.49751 23 14 2 0 0 0 0.23986 1 45813 45813 1.6526 0 1 644370 + 51288 18350 34681 35469 59615 59615 0.02790567820261458 QYLKILTSL 9 Unmodified _QYLKILTSL_ 0 0 0 ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 ENSG00000085382|ENST00000262903|HACE1 ENSG00000085382|ENST00000262903|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.82958984375 2 539.828975 1077.6434 0.55865 0.00030158 0.46554 0.00025131 1.0242 0.00055289 539.8291336695444 74.109 0.23622 73.634 73.504 73.741 -0.47588 16 9 2 0 0 0 0.42049 1 40551 40551 16.942 0 1 628180 51289 1408 34682 35470 59616 59616 0.10768059688280118 QYLKILTSL 9 Unmodified _QYLKILTSL_ 0 0 0 ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 ENSG00000085382|ENST00000262903|HACE1 ENSG00000085382|ENST00000262903|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.830322265625 2 539.828975 1077.6434 0.26004 0.00014038 1.0337 0.00055802 1.2937 0.0006984 539.8291440999762 73.579 0.4614 73.623 73.361 73.822 0.043976 58 20 4 0 0 0 0.011291 2 40458 40458;40558 85.272 21.036 1 58865000 51290 1408 34682 35470 59617;59618 59617 0.10768059688280118 QYLKMLQKL 9 Unmodified _QYLKMLQKL_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000483007.1_1_1:52280221-52280296:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.5695495605469 3 388.898493 1163.67365 0.99464 0.00038681 3.124 0.0012149 4.1187 0.0016017 389.2336916636167 82.721 0.30836 76.546 76.438 76.747 -6.1757 21 17 2 0 0 0 0.20572 1 54327 54327 10.151 0.6066 1 11964000 51291 1247 34683 35471 59619 59619 0.09836095081800522 QYLKNYFHL 9 Unmodified _QYLKNYFHL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2166137695312 3 409.216991 1224.62914 0.040968 1.6765E-05 0.39424 0.00016133 0.4352 0.00017809 409.216995048968 55.058 0.25847 54.989 54.859 55.117 -0.068737 19 12 2 0 0 0 0.10925 1 29918 29918 36.127 30.395 1 2314900 51292 1980 34684 35472 59620 59620 0.025814072599814608 QYLKVEQLF 9 Unmodified _QYLKVEQLF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 584.3251953125 2 584.324057 1166.63356 NaN NaN NaN NaN NaN NaN NaN 83.417 1 77.242 76.742 77.742 -6.1757 0 0 0 0.053277 1 54851 54851 56.177 14.082 1 51293 844 34685 35473 59621 59621 0.05690871682895704 QYLKVEQLF 9 Unmodified _QYLKVEQLF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 584.3226928710938 2 584.324057 1166.63356 NaN NaN NaN NaN NaN NaN NaN 83.603 1 77.427 76.927 77.927 -6.1757 0 0 0 0.083082 1 54980 54980 47.749 3.3417 1 51294 844 34685 35473 59622 59622 0.05690871682895704 QYLLDTSTW 9 Unmodified _QYLLDTSTW_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7754516601562 2 563.774396 1125.53424 0.87937 0.00049577 -0.31038 -0.00017498 0.56899 0.00032078 563.7743111592719 74.17 0.35938 73.694 73.504 73.864 -0.47588 28 14 3 0 0 0 0.2001 1 40620 40620 23.148 0 1 2013000 51295 7926 34686 35474 59623 59623 -0.02350571001852586 QYLLDTSTW 9 Unmodified _QYLLDTSTW_ 0 0 0 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 ENSG00000169908|ENST00000305366|TM4SF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.774396 1125.53424 0.6191 0.00034903 -4.8962 -0.0027604 -4.2771 -0.0024113 563.7721157333001 73.417 0.11395 73.461 73.405 73.519 0.043983 -0.11638 -0.0047257 NaN 23.148 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 343720 51296 7926 34686 35474 -0.02350571001852586 QYLLTALEL 9 Unmodified _QYLLTALEL_ 0 0 0 nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260|RELCH nc|ENSG00000134444|Q9P260|RELCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3053588867188 2 532.305332 1062.59611 0.30907 0.00016452 0.13335 7.0981E-05 0.44241 0.0002355 532.3053017680708 96.95 0.28493 96.646 96.495 96.78 -0.30472 36 17 3 0 0 0 0.43463 1 52899 52899 10.824 3.5347 1 1083000 51297 4608 34687 35475 59624 59624 0.06731780417271693 QYLLVTALY 9 Unmodified _QYLLVTALY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3079223632812 2 542.307875 1082.6012 0.2441 0.00013238 0.02248 1.2191E-05 0.26658 0.00014457 542.3078038414035 90.339 0.38165 89.838 89.639 90.02 -0.50171 45 17 3 0 0 0 0.13231 1 49403 49403 39.957 13.074 1 3649400 51298 7333 34688 35476 59625 59625 0.06320084279900584 QYLLVTALY 9 Unmodified _QYLLVTALY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3092041015625 2 542.307875 1082.6012 0.38653 0.00020962 0.88033 0.00047741 1.2669 0.00068703 542.308208324604 89.733 0.32097 89.776 89.645 89.966 0.042175 26 11 3 0 0 0 0.012668 2 49907 49907;50005 92.822 50.728 1 12731000 51299 7333 34688 35476 59626;59627 59626 0.06320084279900584 QYLLVTALY 9 Unmodified _QYLLVTALY_ 0 0 0 ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA ENSG00000165389|ENST00000298130|SPTSSA MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3082885742188 2 542.307875 1082.6012 0.91498 0.0004962 0.031476 1.707E-05 0.94646 0.00051327 542.3080182149705 99.432 0.1972 93.256 93.144 93.341 -6.1757 22 12 2 0 0 0 0.029718 1 66187 66187 71.134 31.176 1 74882000 51300 7333 34688 35476 59628 59628 0.06320084279900584 QYLMDNPTF 9 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ QYLM(1)DNPTF QYLM(100)DNPTF 0 0 1 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.75341796875 2 572.752607 1143.49066 0.97336 0.00055749 -0.73147 -0.00041895 0.24189 0.00013854 572.7522862617268 51.267 0.41082 51.267 51.15 51.561 0 49 18 4 0 0 0 0.00856 1 28349 28349 100.37 78.625 1 33530000 51301 9830 34689 35477 59629 59629 1576 -0.07534503770671108 QYLMDNPTF 9 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ QYLM(1)DNPTF QYLM(74)DNPTF 0 0 1 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.752197265625 2 572.752607 1143.49066 0.17436 9.9867E-05 0.47547 0.00027233 0.64984 0.0003722 572.7520706547783 51.69 0.22833 51.256 51.136 51.364 -0.43367 17 11 2 0 0 0 0.012148 1 27881 27881 74.423 52.676 1 5044900 51302 9830 34689 35477 59630 59630 1576 -0.07534503770671108 QYLMDNPTF 9 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ QYLM(1)DNPTF QYLM(67)DNPTF 0 0 1 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7518920898438 2 572.752607 1143.49066 0.42306 0.00024231 -0.53402 -0.00030586 -0.11096 -6.3555E-05 572.7523350302286 51.918 0.22369 51.485 51.346 51.569 -0.43367 24 11 3 0 0 0 0.016184 1 28026 28026 67.344 45.597 1 4173400 51303 9830 34689 35477 59631 59631 1576 -0.07534503770671108 QYLMDNPTF 9 Oxidation (M) _QYLM(Oxidation (M))DNPTF_ QYLM(1)DNPTF QYLM(100)DNPTF 0 0 1 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7529907226562 2 572.752607 1143.49066 1.3478 0.00077193 -0.72326 -0.00041425 0.62449 0.00035768 572.7522907954742 59.184 0.64317 53.11 52.734 53.377 -6.0745 76 35 3 0 0 0 0.00856 3 37964 37825;37964;38100 100.37 66.269 1 42381000 51304 9830 34689 35477 59632;59633;59634 59633 1576 -0.07534503770671108 QYLMDNPTF 9 Unmodified _QYLMDNPTF_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.75341796875 2 564.755149 1127.49575 NaN NaN NaN NaN NaN NaN NaN 63.576 1 63.576 63.076 64.076 0 0 0 0 0.098163 1 35464 35464 43.858 26.916 1 51305 9830 34689 35478 59635 59635 -0.0629019990803954 QYLMDNPTF 9 Unmodified _QYLMDNPTF_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7576293945312 2 564.755149 1127.49575 1.295 0.00073133 -0.088041 -4.9722E-05 1.2069 0.00068161 564.7556102864044 71.185 0.41878 65.01 64.787 65.206 -6.1757 51 20 3 0 0 0 0.010818 2 46454 46454;46570 78.149 44.047 1 62562000 51306 9830 34689 35478 59636;59637 59636 -0.0629019990803954 QYLMQYWRYQ 10 Unmodified _QYLMQYWRYQ_ 0 0 0 REV__nc|ENSG00000261832|Q13286-7|CLN3 REV__nc|ENSG00000261832|Q13286-7|CLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 739.8455810546875 2 739.847904 1477.68126 0.14597 0.000108 -3.8483 -0.0028471 -3.7023 -0.0027391 739.8453140692096 57.93 0.1837 57.44 57.35 57.533 -0.48974 11 8 2 0 0 0 0.71276 1 31506 31506 1.4819 0 1 2296600 + 51307 23719 34690 35479 59638 59638 -0.03847797388584695 QYLMQYWRYQ 10 Unmodified _QYLMQYWRYQ_ 0 0 0 REV__nc|ENSG00000261832|Q13286-7|CLN3 REV__nc|ENSG00000261832|Q13286-7|CLN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 739.847904 1477.68126 0.14597 0.000108 -3.8483 -0.0028471 -3.7023 -0.0027391 739.8453140692096 57.93 0.1837 57.44 57.35 57.533 -0.48974 0 0 NaN 1.4819 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2296600 + 51308 23719 34690 35479 -0.03847797388584695 QYLNKNALTTL 11 Unmodified _QYLNKNALTTL_ 0 0 0 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3572387695312 2 639.856252 1277.69795 -0.45989 -0.00029426 0.040212 2.573E-05 -0.41968 -0.00026853 639.8564851781339 51.447 0.18711 51.033 50.969 51.156 -0.41351 18 9 2 0 0 0 0.056311 1 27734 27734 49.527 27.781 1 9814200 51309 9325 34691 35480 59639 59639 0.07021026769029959 QYLNKNALTTL 11 Unmodified _QYLNKNALTTL_ 0 0 0 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.85595703125 2 639.856252 1277.69795 0.13923 8.9089E-05 -0.46435 -0.00029712 -0.32512 -0.00020803 640.3572279221034 51.109 0.20481 51.055 50.942 51.147 -0.053875 19 9 3 0 0 0 0.42108 1 27640 27640 20.415 11.031 1 3305200 51310 9325 34691 35480 59640 59640 0.07021026769029959 QYLNKNALTTL 11 Unmodified _QYLNKNALTTL_ 0 0 0 ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF ENSG00000185049|ENST00000382882|NELFA ENSG00000185049|ENST00000382882|NELFA MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8551025390625 2 639.856252 1277.69795 0.70587 0.00045165 -0.98645 -0.00063119 -0.28059 -0.00017953 639.8555022056231 57.149 0.43227 51.173 50.975 51.407 -5.9769 47 24 3 0 0 0 0.0008837 2 36488 36488;36624 84.522 40.75 1 48152000 51311 9325 34691 35480 59641;59642 59641 0.07021026769029959 QYLPAIRALW 10 Unmodified _QYLPAIRALW_ 0 0 0 ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8539428710938 2 615.853316 1229.69208 1.0709 0.0006595 0.063331 3.9003E-05 1.1342 0.00069851 615.852977495505 97.908 0.2047 91.732 91.627 91.831 -6.1757 24 11 3 0 0 0 0.016642 1 64877 64877 78.728 46.423 1 33751000 51312 3493 34692 35481 59643 59643 0.0864197304802019 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2134399414062 3 366.213581 1095.61891 -0.42861 -0.00015696 -0.033997 -1.245E-05 -0.46261 -0.00016941 366.2136291871373 41.553 0.28603 41.553 41.499 41.785 0 19 14 2 0 0 0 0.37578 1 22437 22437 13.615 6.5131 1 5574000 51313 5909 34693 35482 59644 59644 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.2136535644531 3 366.213581 1095.61891 -0.3111 -0.00011393 0.14166 5.1877E-05 -0.16944 -6.2052E-05 366.2135968659383 41.811 0.34509 41.505 41.355 41.701 -0.30682 53 16 5 0 0 0 0.44883 2 22252 22142;22252 10.151 3.0488 1 260010000 51314 5909 34693 35482 59645;59646 59646 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.31689453125 2 548.816733 1095.61891 -0.3415 -0.00018742 0.13999 7.6828E-05 -0.20151 -0.00011059 548.8169855343032 41.823 0.22664 41.517 41.392 41.619 -0.30682 23 10 3 0 0 0 0.033587 1 22168 22168 58.679 31.795 1 11548000 51315 5909 34693 35482 59647 59647 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2133483886719 3 366.213581 1095.61891 -0.2646 -9.6898E-05 0.046549 1.7047E-05 -0.21805 -7.9851E-05 366.2135520512204 41.564 0.36184 41.562 41.359 41.721 -0.0017929 63 16 5 0 0 0 0.35911 2 22273 22164;22273 14.405 7.3037 1 328890000 51316 5909 34693 35482 59648;59649 59649 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8163452148438 2 548.816733 1095.61891 -0.19076 -0.00010469 -0.02666 -1.4631E-05 -0.21742 -0.00011932 548.816672335927 41.581 0.2578 41.579 41.422 41.68 -0.0017891 29 11 3 0 0 0 0.021948 1 22192 22192 68.081 39.594 1 17308000 51317 5909 34693 35482 59650 59650 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.548828125 3 366.213581 1095.61891 1.1836 0.00043345 -0.28437 -0.00010414 0.89922 0.00032931 366.21342485722175 46.186 0.55699 41.231 40.951 41.508 -4.9549 136 37 5 0 0 0 0.19361 3 28693 28405;28541;28693 23.79 7.3037 1 1553099999.9999998 51318 5909 34693 35482 59651;59652;59653 59653 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8162231445312 2 548.816733 1095.61891 0.48793 0.00026779 -0.2869 -0.00015746 0.20103 0.00011033 548.8165610223101 46.183 0.47371 41.228 40.983 41.457 -4.9549 87 31 4 0 0 0 0.029718 2 28588 28449;28588 52.268 23.782 1 195550000 51319 5909 34693 35482 59654;59655 59655 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2140502929688 3 366.213581 1095.61891 1.4586 0.00053418 0.085955 3.1478E-05 1.5446 0.00056565 366.21343414681377 55.568 0.94065 49.647 49.272 50.212 -5.9211 121 56 3 0 0 0 0.19361 4 35426 35298;35426;35557;35694 23.79 12.99 1 60498000 51320 5909 34693 35482 59656;59657;59658;59659 59657 0.07492844325406622 QYLPHVARL 9 Unmodified _QYLPHVARL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4;ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5482482910156 3 366.213581 1095.61891 1.243 0.00045522 -0.25779 -9.4407E-05 0.98526 0.00036081 366.2134835088656 56.308 1.0928 50.331 50.139 51.232 -5.9769 116 64 3 0 0 0 0.085319 6 35961 35830;35961;36100;36257;36501;36512 36.506 22.891 1 34754000 51321 5909 34693 35482 59660;59661;59662;59663;59664;59665 59661 0.07492844325406622 QYLPKLHTL 9 Unmodified _QYLPKLHTL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.5541381835938 3 371.553603 1111.63898 -0.22824 -8.4804E-05 0.41942 0.00015584 0.19118 7.1033E-05 371.55377944865415 44.5 0.1992 44.184 44.087 44.287 -0.31585 20 13 2 0 0 0 0.020973 1 23729 23729 49.527 28.946 1 31908000 51322 4485 34694 35483 59666 59666 0.08762595265375239 QYLPKLHTL 9 Unmodified _QYLPKLHTL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.553466796875 3 371.553603 1111.63898 0.051552 1.9154E-05 -0.74296 -0.00027605 -0.69141 -0.0002569 371.5535843583251 44.174 0.26214 44.152 44.04 44.303 -0.022064 42 17 3 0 0 0 0.010611 1 23671 23671 71.708 45.687 1 63319000 51323 4485 34694 35483 59667 59667 0.08762595265375239 QYLPKLHTL 9 Unmodified _QYLPKLHTL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8272094726562 2 556.826766 1111.63898 NaN NaN NaN NaN NaN NaN NaN 44.154 1 44.132 43.632 44.632 -0.022064 0 0 0 0.018164 1 23684 23684 118.89 75.122 1 51324 4485 34694 35483 59668 59668 0.08762595265375239 QYLPKLHTL 9 Unmodified _QYLPKLHTL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.5536193847656 3 371.553603 1111.63898 1.6631 0.00061793 -0.50654 -0.00018821 1.1566 0.00042973 371.5533916827649 49.447 0.47424 44.051 43.824 44.298 -5.3961 75 29 3 0 0 0 0.024882 2 30787 30787;30903 53.404 36.838 1 181760000 51325 4485 34694 35483 59669;59670 59669 0.08762595265375239 QYLPKLHTL 9 Unmodified _QYLPKLHTL_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8272705078125 2 556.826766 1111.63898 1.1946 0.00066516 -0.11763 -6.5498E-05 1.0769 0.00059966 556.8267264231636 49.425 0.36906 44.029 43.853 44.222 -5.3961 39 22 2 0 0 0 0.0082353 2 30815 30815;30954 107.19 76.55 1 88795000 51326 4485 34694 35483 59671;59672 59671 0.08762595265375239 QYLPMCISDI 10 Carbamidomethyl (C),Oxidation (M) _QYLPM(Oxidation (M))C(Carbamidomethyl (C))ISDI_ QYLPMC(1)ISDI QYLPM(1)CISDI QYLPMC(44)ISDI QYLPM(44)CISDI 0 1 1 REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2879028320312 2 628.288499 1254.56245 0.16943 0.00010645 -0.79222 -0.00049775 -0.62279 -0.00039129 628.2885905726273 37.302 0.16969 37.302 37.219 37.389 0 19 8 3 0 0 0 0.11755 1 19836 19836 43.858 7.3521 1 2829000 + 51327 19628 34695 35484 59673 59673 1037 1839 -0.05465332408402901 QYLPMCISDI 10 Carbamidomethyl (C),Oxidation (M) _QYLPM(Oxidation (M))C(Carbamidomethyl (C))ISDI_ 0 1 1 REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A REV__nc|ENSG00000128655|Q9HCR9-4|PDE11A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 628.288499 1254.56245 0.16943 0.00010645 -0.79222 -0.00049775 -0.62279 -0.00039129 628.2885905726273 37.302 0.16969 37.302 37.219 37.389 0 -0.061941 -0.002055 NaN 43.858 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2829000 + 51328 19628 34695 35484 1037 1839 -0.05465332408402901 QYLPPKCMQEI 11 Carbamidomethyl (C) _QYLPPKC(Carbamidomethyl (C))MQEI_ QYLPPKC(1)MQEI QYLPPKC(59)MQEI 0 1 0 ENSG00000168404|ENST00000308807|MLKL ENSG00000168404|ENST00000308807|MLKL ENSG00000168404|ENST00000308807|MLKL MSMS AL20221201_MKP_PDAC_01 4 703.8447265625 2 703.843973 1405.67339 NaN NaN NaN NaN NaN NaN NaN 54.089 1 48.224 47.724 48.724 -5.8653 0 0 0 0.060273 1 34259 34259 59.368 22.862 1 51329 7759 34696 35485 59674 59674 756 -0.013216927003668388 QYLPYISYL 9 Unmodified _QYLPYISYL_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.76904296875 2 580.305332 1158.59611 0.51028 0.00029612 -0.52742 -0.00030606 -0.017137 -9.9447E-06 580.3053579714528 99.626 0.17758 93.45 93.38 93.558 -6.1757 27 10 4 0 0 0 0.15672 1 66343 66343 26.884 9.9414 1 58841000 51330 7661 34697 35486 59675 59675 0.023157804172797114 QYLQDAYSF 9 Unmodified _QYLQDAYSF_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7592163085938 2 567.758746 1133.50294 0.74963 0.00042561 0.37772 0.00021445 1.1273 0.00064006 567.7589260184781 60.331 0.42548 60.331 60.068 60.494 0 45 18 3 0 0 0 0.040683 1 33633 33633 64.236 42.49 1 15480000 51331 418 34698 35487 59676 59676 -0.05847144035965357 QYLQDAYSF 9 Unmodified _QYLQDAYSF_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.759033203125 2 567.758746 1133.50294 -0.11097 -6.3005E-05 0.66113 0.00037536 0.55015 0.00031235 567.7591791525671 61.008 0.30176 60.518 60.353 60.654 -0.48932 21 14 2 0 0 0 0.029718 1 33207 33207 71.134 50.68 1 6244400 51332 418 34698 35487 59677 59677 -0.05847144035965357 QYLQDAYSF 9 Unmodified _QYLQDAYSF_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2;ENST00000538600.1_1_12:6631091-6632090:+|nuORF ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.2978515625 2 567.758746 1133.50294 0.84876 0.00048189 -0.78117 -0.00044352 0.06759 3.8375E-05 567.7587217135691 68.327 0.45905 62.151 61.906 62.365 -6.1757 57 27 3 0 0 0 0.17716 1 44683 44683 30.637 21.253 1 53159000 51333 418 34698 35487 59678 59678 -0.05847144035965357 QYLQERTY 8 Unmodified _QYLQERTY_ 0 0 0 REV__MCOLN1|p.A118T|1|0.16|ENSG00000090674|chr19:7526553-7526553|G/A|missense_variant REV__MCOLN1|p.A118T|1|0.16|ENSG00000090674|chr19:7526553-7526553|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7710571289062 2 550.772188 1099.52982 0.71568 0.00039418 -1.2149 -0.00066912 -0.49919 -0.00027494 550.7713373912035 41.164 0.77913 36.556 36.067 36.846 -4.6079 136 38 5 0 0 0 0.57045 2 24520 24520;24788 28.487 3.0875 1 618650000 + 51334 17868 34699 35488 59679;59680 59679 -0.015960354247454234 QYLREVYF 8 Unmodified _QYLREVYF_ 0 0 0 ENST00000479014.1_1_7:87005212-87011518:+|nuORF ENST00000479014.1_1_7:87005212-87011518:+|nuORF ENST00000479014.1_1_7:87005212-87011518:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2879638671875 2 559.287474 1116.5604 0.66448 0.00037163 1.2411 0.00069411 1.9055 0.0010657 559.789986226596 87.62 0.26836 87.116 86.97 87.239 -0.50423 24 12 3 0 0 0 0.80722 1 47908 47908 2.3027 0 1 495400 51335 14030 34700 35489 59681 59681 0.0067774296028346726 QYLRNPPKL 9 Unmodified _QYLRNPPKL_ 0 0 0 nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 nc|ENSG00000160691|P29353-5|SHC1 nc|ENSG00000160691|P29353-5|SHC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8888549804688 3 376.888986 1127.64513 -0.25218 -9.5045E-05 1.1468 0.00043221 0.89459 0.00033716 376.8893914308427 33.342 0.29255 33.183 33.052 33.345 -0.15918 23 11 3 0 0 0 0.1773 1 17398 17398 18.373 7.5492 1 2452100 51336 6743 34701 35490 59682 59682 0.08641113496878461 QYLRNPPKL 9 Unmodified _QYLRNPPKL_ 0 0 0 nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 nc|ENSG00000160691|P29353-5|SHC1 nc|ENSG00000160691|P29353-5|SHC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.889404296875 3 376.888986 1127.64513 1.7295 0.00065183 -0.85216 -0.00032117 0.87734 0.00033066 376.8887694667467 37.419 0.3505 33.135 32.955 33.306 -4.2835 51 20 3 0 0 0 0.2143 1 21916 21916 26.268 14.628 1 33267000 51337 6743 34701 35490 59683 59683 0.08641113496878461 QYLRNPPKL 9 Unmodified _QYLRNPPKL_ 0 0 0 nc|ENSG00000160691|P29353-5|SHC1;nc|ENSG00000160691|P29353-3|SHC1;nc|ENSG00000160691|P29353-2|SHC1;nc|ENSG00000160691|P29353-7|SHC1;nc|ENSG00000160691|P29353|SHC1;ENSG00000160691|ENST00000448116|SHC1 nc|ENSG00000160691|P29353-5|SHC1 nc|ENSG00000160691|P29353-5|SHC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 376.888986 1127.64513 -0.022178 -8.3588E-06 0.71707 0.00027026 0.69489 0.0002619 376.88927413616784 33.17 0.2972 33.199 33.041 33.338 0.028931 0.0078194 -0.00024852 NaN 18.373 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6256300 51338 6743 34701 35490 0.08641113496878461 QYLRNQGAF 9 Unmodified _QYLRNQGAF_ 0 0 0 REV__ENSG00000103023|ENST00000567164|PRSS54 REV__ENSG00000103023|ENST00000567164|PRSS54 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8064575195312 2 548.780348 1095.54614 1.3691 0.00075132 0.25902 0.00014215 1.6281 0.00089347 548.7787054607118 81.358 0.16307 81.418 81.343 81.507 0.059929 9 5 2 0 0 0 0.19613 1 45035 45035 12.532 0 1 734370 + 51339 18274 34702 35491 59684 59684 0.002190905319821468 QYLRQAEVL 9 Unmodified _QYLRQAEVL_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;ENST00000367538.1_1_1:183441704-183485127:+|nuORF nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3109741210938 2 560.31148 1118.60841 0.80776 0.0004526 0.026133 1.4643E-05 0.83389 0.00046724 560.3114670538331 42.482 0.44273 42.482 42.143 42.586 0 51 21 3 0 0 0 0.032796 1 22896 22896 53.833 11.993 1 22976000 51340 16141 34703 35492 59685 59685 0.05384816880314247 QYLRQEVL 8 Unmodified _QYLRQEVL_ 0 0 0 ENSG00000099940|ENST00000215730|SNAP29;ENST00000490458.1_1_22:21213398-21224822:+|nuORF ENSG00000099940|ENST00000215730|SNAP29 ENSG00000099940|ENST00000215730|SNAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7931518554688 2 524.792924 1047.57129 0.36542 0.00019177 -0.53679 -0.0002817 -0.17137 -8.9936E-05 524.7926422495274 45.517 0.47402 45.517 45.345 45.819 0 80 25 5 0 0 0 0.40602 1 24866 24866 36.044 6.9626 1 270500000 51341 1722 34704 35493 59686 59686 0.049411453345555856 QYLRRLHYF 9 Unmodified _QYLRRLHYF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5718383789062 3 432.571768 1294.69348 -0.0028139 -1.2172E-06 -0.13757 -5.9507E-05 -0.14038 -6.0724E-05 432.5717417002443 35.954 0.42426 35.979 35.826 36.25 0.024967 69 19 5 0 0 0 0.016184 1 18998 18998 69.105 43.084 1 115970000 51342 9204 34705 35494 59687 59687 0.057916071367799304 QYLRRLHYF 9 Unmodified _QYLRRLHYF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5715637207031 3 432.571768 1294.69348 0.38188 0.00016519 -0.24121 -0.00010434 0.14067 6.0851E-05 432.5716811544947 84.621 0.5649 78.445 78.155 78.72 -6.1757 75 32 3 0 0 0 0.026094 2 55565 55565;55725 43.772 22.235 1 44676000 51343 9204 34705 35494 59688;59689 59688 0.057916071367799304 QYLRVETQF 9 Unmodified _QYLRVETQF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.30908203125 2 592.308938 1182.60332 0.49041 0.00029047 -0.20369 -0.00012064 0.28672 0.00016983 592.3088798938692 49.657 0.34908 49.657 49.51 49.859 0 34 15 3 0 0 0 0.073961 1 27373 27373 49.554 20.473 1 9333300 51344 10934 34706 35495 59690 59690 0.019325130176866878 QYLRVETQF 9 Unmodified _QYLRVETQF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3095092773438 2 592.308938 1182.60332 0.86809 0.00051418 -0.018438 -1.0921E-05 0.84966 0.00050326 592.3088530745308 50.109 0.36066 49.717 49.55 49.911 -0.3923 52 17 4 0 0 0 0.018061 1 26999 26999 71.922 37.521 1 22564000 51345 10934 34706 35495 59691 59691 0.019325130176866878 QYLRVETQF 9 Unmodified _QYLRVETQF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3093872070312 2 592.308938 1182.60332 0.91842 0.00054399 -0.27081 -0.0001604 0.64761 0.00038359 592.3086367934936 49.784 0.21977 49.735 49.626 49.846 -0.048824 24 10 3 0 0 0 0.016448 1 26927 26927 82.529 46.402 1 2209000 51346 10934 34706 35495 59692 59692 0.019325130176866878 QYLRVETQF 9 Unmodified _QYLRVETQF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3092041015625 2 592.308938 1182.60332 0.10398 6.159E-05 0.86423 0.00051189 0.96821 0.00057348 592.3092225709901 56.004 0.52434 50.083 49.782 50.306 -5.9211 84 30 4 0 0 0 1.719E-10 3 35691 35560;35691;35845 193.29 114.57 1 227150000 51347 10934 34706 35495 59693;59694;59695 59694 0.019325130176866878 QYLSEIVQ 8 Unmodified _QYLSEIVQ_ 0 0 0 REV__ENST00000550797.1_1_12:49458888-49462935:-|nuORF REV__ENST00000550797.1_1_12:49458888-49462935:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.51611328125 1 979.509488 978.502212 -0.13214 -0.00012943 0.82568 0.00080876 0.69354 0.00067933 979.5098677073812 78.697 0.28841 78.211 78.035 78.323 -0.48596 21 10 3 0 0 0 0.75262 1 43048 43048 12.532 0 1 1164400 + 51348 22219 34707 35496 59696 59696 0.012100613149982564 QYLSLPTVF 9 Unmodified _QYLSLPTVF_ 0 0 0 nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1 nc|ENSG00000241635|P22309-2|UGT1A1 nc|ENSG00000241635|P22309-2|UGT1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2928466796875 2 534.292225 1066.5699 1.8943 0.0010121 1.2266 0.00065534 3.1209 0.0016675 534.2928573577477 93.805 0.27116 93.828 93.62 93.892 0.022987 25 10 3 0 0 0 0.10734 1 52105 52105 32.305 13.049 1 1666400 51349 10684 34708 35497 59697 59697 0.03927511245797177 QYLSRFESW 9 Unmodified _QYLSRFESW_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2935180664062 2 608.293288 1214.57202 0.31978 0.00019452 -1.2788 -0.00077789 -0.95903 -0.00058337 608.292223445522 58.116 0.29247 57.626 57.41 57.702 -0.48974 21 13 2 0 0 0 0.10134 1 31564 31564 34.932 7.3033 1 3445300 51350 3678 34709 35498 59698 59698 -0.026680600163899726 QYLSRFESW 9 Unmodified _QYLSRFESW_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.293288 1214.57202 0.89191 0.00054254 -0.5482 -0.00033347 0.34371 0.00020908 608.7941113241458 57.71 0.18184 57.644 57.573 57.755 -0.066036 0.0091225 0.00060061 NaN 34.932 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1440500 51351 3678 34709 35498 -0.026680600163899726 QYLSSIQHL 9 Unmodified _QYLSSIQHL_ 0 0 0 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7924194335938 2 544.790381 1087.56621 0.11233 6.1195E-05 1.3644 0.00074334 1.4768 0.00080453 544.7910851357395 48.969 0.23376 48.597 48.48 48.714 -0.37172 29 11 3 0 0 0 0.014417 1 26290 26290 69.105 29.148 1 6061000 51352 608 34710 35499 59699 59699 0.025928414719373905 QYLSSIQHL 9 Unmodified _QYLSSIQHL_ 0 0 0 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 ENSG00000034693|ENST00000367591|PEX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7916870117188 2 544.790381 1087.56621 0.72393 0.00039439 0.75602 0.00041187 1.48 0.00080627 544.7903976277497 54.527 0.32992 48.662 48.469 48.799 -5.8653 25 20 2 0 0 0 0.0087873 1 34555 34555 103.35 59.495 1 35607000 51353 608 34710 35499 59700 59700 0.025928414719373905 QYLSSVDSF 9 Unmodified _QYLSSVDSF_ 0 0 0 nc|ENSG00000125740|P53539-6|FOSB;nc|ENSG00000125740|P53539-5|FOSB;nc|ENSG00000125740|P53539-2|FOSB;nc|ENSG00000125740|P53539-11|FOSB;nc|ENSG00000125740|P53539-7|FOSB;nc|ENSG00000125740|P53539-4|FOSB;nc|ENSG00000125740|P53539-3|FOSB;ENSG00000125740|ENST00000353609|FOSB;nc|ENSG00000125740|P53539-9|FOSB;nc|ENSG00000125740|P53539-8|FOSB nc|ENSG00000125740|P53539-6|FOSB nc|ENSG00000125740|P53539-6|FOSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2451171875 2 523.245472 1044.47639 0.39004 0.00020409 -0.57923 -0.00030308 -0.18919 -9.8991E-05 523.2451433457742 56.662 0.26857 56.662 56.495 56.763 0 24 11 3 0 0 0 0.07916 1 31496 31496 37.974 19.839 1 2474200 51354 16173 34711 35500 59701 59701 -0.044068329272931805 QYLSTDKLI 9 Unmodified _QYLSTDKLI_ 0 0 0 nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5 nc|ENSG00000104055|O43548-2|TGM5 nc|ENSG00000104055|O43548-2|TGM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.800537109375 2 540.800414 1079.58628 0.2052 0.00011097 0.92616 0.00050087 1.1314 0.00061184 540.8009043360621 38.61 0.2894 34.241 34.03 34.319 -4.3689 33 18 2 0 0 0 0.14 1 22817 22817 29.082 5.061 1 18760000 51355 2173 34712 35501 59702 59702 0.04966592411892634 QYLTFKPQTF 10 Unmodified _QYLTFKPQTF_ 0 0 0 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8330688476562 2 636.834788 1271.65502 NaN NaN NaN NaN NaN NaN NaN 60.359 1 60.315 59.815 60.815 -0.04351 0 0 0 2.3021E-10 1 32920 32920 143.91 109.51 1 51356 2657 34713 35502 59703 59703 0.030062567115919592 QYLTFKPQTF 10 Unmodified _QYLTFKPQTF_ 0 0 0 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 ENSG00000109586|ENST00000265000|GALNT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.833984375 2 636.834788 1271.65502 0.42047 0.00026777 -1.0406 -0.0006627 -0.62014 -0.00039493 636.834267090524 67.821 0.43315 61.645 61.438 61.871 -6.1757 41 24 2 0 0 0 0.021614 1 44196 44196 74.2 52.663 1 17522000 51357 2657 34713 35502 59704 59704 0.030062567115919592 QYLTSSLHF 9 Unmodified _QYLTSSLHF_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2750854492188 2 548.277106 1094.53966 -0.19871 -0.00010895 -1.3306 -0.00072956 -1.5294 -0.00083851 548.2759595884606 60.695 0.26256 60.206 60.05 60.313 -0.48932 29 12 3 0 0 0 0.095405 1 33030 33030 34.102 17.016 1 8999000 51358 1796 34714 35503 59705 59705 -0.0038284741938241496 QYLTSSLHF 9 Unmodified _QYLTSSLHF_ 0 0 0 nc|ENSG00000100330|Q13615-3|MTMR3;nc|ENSG00000100330|Q13615-2|MTMR3;ENSG00000100330|ENST00000401950|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.275390625 2 548.277106 1094.53966 0.74991 0.00041116 -0.77612 -0.00042553 -0.026212 -1.4372E-05 548.2756099863484 66.156 0.3508 59.981 59.806 60.156 -6.1757 42 19 3 0 0 0 0.095405 1 43003 43003 34.102 17.016 1 20184000 51359 1796 34714 35503 59706 59706 -0.0038284741938241496 QYLTSVQQL 9 Unmodified _QYLTSVQQL_ 0 0 0 nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2904663085938 2 540.290214 1078.56587 -0.11699 -6.3208E-05 -1.1725 -0.00063347 -1.2894 -0.00069668 540.2902674775318 55.199 0.47502 55.199 54.986 55.461 0 57 20 5 0 0 0 0.015445 2 30627 30627;30732 68.081 25.986 1 12618000 51360 9060 34715 35504 59707;59708 59707 0.029734217520854145 QYLTSVQQL 9 Unmodified _QYLTSVQQL_ 0 0 0 nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2891845703125 2 540.290214 1078.56587 -0.057299 -3.0958E-05 -0.4087 -0.00022081 -0.466 -0.00025177 540.2898590095806 55.787 0.30972 55.309 55.112 55.422 -0.47798 33 14 3 0 0 0 0.015445 1 30240 30240 68.081 30.107 1 7221100 51361 9060 34715 35504 59709 59709 0.029734217520854145 QYLTSVQQL 9 Unmodified _QYLTSVQQL_ 0 0 0 nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2907104492188 2 540.290214 1078.56587 0.85209 0.00046037 -0.44359 -0.00023967 0.4085 0.00022071 540.2913131990828 63.043 0.48985 56.868 56.653 57.143 -6.1757 49 25 3 0 0 0 0.015445 1 40655 40655 68.081 41.197 1 38987000 51362 9060 34715 35504 59710 59710 0.029734217520854145 QYLTVLASL 9 Unmodified _QYLTVLASL_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897115-64897501:-|nuORF;ENST00000527765.1_1_11:64896153-64897501:-|nuORF;ENST00000530451.1_1_11:64889655-64897376:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2933959960938 2 504.292225 1006.5699 0.88742 0.00044752 2.554 0.001288 3.4414 0.0017355 504.2937652365078 99.5 0.12253 93.325 93.276 93.399 -6.1757 12 7 2 0 0 0 0.011968 1 66307 66307 74.929 18.752 1 30647000 51363 6845 34716 35505 59711 59711 0.06687511245786482 QYLTYYPSF 9 Unmodified _QYLTYYPSF_ 0 0 0 ENST00000492106.1_3_3:107938255-107938309:-|nuORF;ENST00000264538.3_1_3:107937469-107938327:-|nuORF ENST00000492106.1_3_3:107938255-107938309:-|nuORF ENST00000492106.1_3_3:107938255-107938309:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2792358398438 2 591.279315 1180.54408 0.59663 0.00035278 -1.1806 -0.00069809 -0.58401 -0.00034531 591.2788347305025 82.831 0.38823 76.655 76.458 76.846 -6.1757 32 21 2 0 0 0 0.08691 1 54497 54497 36.127 7.0454 1 8926200 51364 11315 34717 35506 59712 59712 -0.03897382996501619 QYLVKLNKE 9 Unmodified _QYLVKLNKE_ 0 0 0 REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8886413574219 3 378.888763 1133.64446 -0.3282 -0.00012435 -0.098747 -3.7414E-05 -0.42695 -0.00016177 378.8885253189612 23.357 0.16294 23.357 23.264 23.427 0 13 7 2 0 0 0 0.60969 1 11900 11900 0.77653 0 1 527630 + 51365 17016 34718 35507 59713 59713 0.08298274057165145 QYLVKLNKE 9 Unmodified _QYLVKLNKE_ 0 0 0 REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF REV__ENST00000465508.5_1_1:6695737-6697639:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 378.888763 1133.64446 -0.3282 -0.00012435 -0.098747 -3.7414E-05 -0.42695 -0.00016177 378.8885253189612 23.357 0.16294 23.357 23.264 23.427 0 0 0 NaN 0.77653 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 527630 + 51366 17016 34718 35507 0.08298274057165145 QYLVRASYL 9 Unmodified _QYLVRASYL_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8086547851562 2 556.808574 1111.60259 0.42062 0.00023421 -0.6726 -0.00037451 -0.25197 -0.0001403 556.8081672128563 51.869 0.22675 51.435 51.305 51.531 -0.43367 27 11 3 0 0 0 0.0085857 1 27959 27959 122.18 77.772 1 8636400 51367 1953;1395 34719 35508 59714 59714 0.05125718368640264 QYLVRASYL 9 Unmodified _QYLVRASYL_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8094482421875 2 556.808574 1111.60259 0.10948 6.0962E-05 0.26816 0.00014931 0.37765 0.00021028 556.808865675937 51.521 0.25176 51.468 51.306 51.558 -0.053871 26 12 3 0 0 0 0.0088231 1 27868 27868 103.35 62.905 1 8249000 51368 1953;1395 34719 35508 59715 59715 0.05125718368640264 QYLVRASYL 9 Unmodified _QYLVRASYL_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B;ENSG00000084731|ENST00000264712|KIF3C ENSG00000101350|ENST00000375712|KIF3B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 556.808574 1111.60259 1.1179 0.00062248 1.0907 0.00060732 2.2086 0.0012298 556.8094693330798 57.53 0.21962 51.503 51.372 51.592 -6.0275 0.034252 0.0013096 NaN 122.18 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 32389000 51369 1953;1395 34719 35508 0.05125718368640264 QYLVSSTFWNY 11 Unmodified _QYLVSSTFWNY_ 0 0 0 REV__nc|ENSG00000112499|O15244-2|SLC22A2 REV__nc|ENSG00000112499|O15244-2|SLC22A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3322143554688 2 704.33261 1406.65067 -0.06903 -4.862E-05 -0.049478 -3.4849E-05 -0.11851 -8.3469E-05 704.3323034147701 65.577 0.19673 65.577 65.475 65.671 0 10 7 2 0 0 0 0.721 1 36619 36619 2.2828 0 1 591680 + 51370 29575 34720 35509 59716 59716 -0.03639252501966439 QYMCYLMEE 9 Unmodified _QYMCYLMEE_ 0 0 0 ENST00000463742.1_1_8:103935654-103935939:-|nuORF ENST00000463742.1_1_8:103935654-103935939:-|nuORF ENST00000463742.1_1_8:103935654-103935939:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.235595703125 2 605.234878 1208.4552 -0.058601 -3.5467E-05 1.2055 0.00072962 1.1469 0.00069416 605.2355198535317 66.121 0.34341 66.121 65.938 66.281 0 58 16 5 0 0 0 0.57757 1 36920 36920 4.756 2.4533 1 8431900 51371 13702 34721 35510 59717 59717 -0.1406862561429989 QYMELFNKI 9 Oxidation (M) _QYM(Oxidation (M))ELFNKI_ QYM(1)ELFNKI QYM(72)ELFNKI 0 0 1 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2984008789062 2 601.299724 1200.5849 -0.12674 -7.621E-05 0.43659 0.00026252 0.30985 0.00018631 601.2999204507053 55.89 0.26041 55.412 55.259 55.52 -0.47798 27 12 3 0 0 0 0.013041 1 30291 30291 71.922 41.286 1 7055500 51372 3809 34722 35511 59718 59718 670 -0.007373649485089118 QYMELFNKI 9 Oxidation (M) _QYM(Oxidation (M))ELFNKI_ QYM(1)ELFNKI QYM(44)ELFNKI 0 0 1 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.298583984375 2 601.299724 1200.5849 -0.63035 -0.00037903 -0.23147 -0.00013918 -0.86182 -0.00051821 601.2996546300525 56.114 0.236 55.629 55.512 55.748 -0.48554 28 11 3 0 0 0 0.05447 1 30441 30441 43.858 23.405 1 10146000 51373 3809 34722 35511 59719 59719 670 -0.007373649485089118 QYMELFNKI 9 Oxidation (M) _QYM(Oxidation (M))ELFNKI_ QYM(1)ELFNKI QYM(69)ELFNKI 0 0 1 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MSMS AL20221201_MKP_PDAC_01 4 601.2994384765625 2 601.299724 1200.5849 NaN NaN NaN NaN NaN NaN NaN 61.698 1 55.522 55.022 56.022 -6.1757 0 0 0 0.027645 1 39758 39758 69.105 34.703 1 51374 3809 34722 35511 59720 59720 670 -0.007373649485089118 QYMELFNKI 9 Unmodified _QYMELFNKI_ 0 0 0 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3021240234375 2 593.302267 1184.58998 0.22456 0.00013323 0.032982 1.9568E-05 0.25754 0.0001528 593.3018929232205 69.02 0.23085 68.539 68.421 68.652 -0.48071 17 9 3 0 0 0 0.21643 1 37741 37741 21.537 12.154 1 1054300 51375 3809 34722 35512 59721 59721 0.005069389141226566 QYMELFNKI 9 Unmodified _QYMELFNKI_ 0 0 0 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 ENSG00000124641|ENST00000265350|MED20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.30029296875 2 593.302267 1184.58998 0.64715 0.00038396 -0.20464 -0.00012141 0.44251 0.00026254 593.302209484004 80.108 0.69015 73.932 73.659 74.35 -6.1757 64 40 2 0 0 0 0.0059585 2 52664 52535;52664 114.65 74.692 1 16298000 51376 3809 34722 35512 59722;59723 59723 0.005069389141226566 QYMENMEQVF 10 2 Oxidation (M) _QYM(Oxidation (M))ENM(Oxidation (M))EQVF_ QYM(1)ENM(1)EQVF QYM(89)ENM(89)EQVF 0 0 2 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.7703857421875 2 675.770671 1349.52679 0.26931 0.00018199 -0.095416 -6.448E-05 0.1739 0.00011751 675.770762516621 42.376 0.38238 42.376 42.161 42.544 0 52 18 4 0 0 0 0.0093042 2 22888 22888;23004 88.954 76.713 1 7777200 51377 1782 34723 35513 59724;59725 59724 299;300 -0.13399414656100817 QYMENMEQVF 10 Unmodified _QYMENMEQVF_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000124507|ENST00000244458|PACSIN1 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.7764282226562 2 659.775756 1317.53696 0.72496 0.00047831 0.18695 0.00012335 0.91191 0.00060166 659.7756200051662 74.822 0.28489 68.646 68.495 68.78 -6.1757 22 14 2 0 0 0 0.0034079 1 48907 48907 103.35 74.272 1 9740000 51378 1782 34723 35514 59726 59726 -0.10910806930883155 QYMERLQLL 9 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ QYM(1)ERLQLL QYM(56)ERLQLL 0 0 1 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.31787109375 2 605.318448 1208.62234 -0.87916 -0.00053217 -0.37275 -0.00022563 -1.2519 -0.0007578 605.3184345798498 55.703 0.43167 55.703 55.437 55.869 0 102 34 4 0 0 0 0.029718 1 30968 30968 55.503 38.39 1 51965000 51379 8295 34724 35515 59727 59727 1401 0.02637726317107081 QYMERLQLL 9 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ QYM(1)ERLQLL QYM(69)ERLQLL 0 0 1 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3177490234375 2 605.318448 1208.62234 -0.65422 -0.00039601 -1.0224 -0.00061886 -1.6766 -0.0010149 605.3180125672952 56.11 0.45025 55.624 55.432 55.882 -0.48554 84 22 5 0 0 0 0.014417 2 30394 30394;30500 69.105 43.706 1 122190000 51380 8295 34724 35515 59728;59729 59728 1401 0.02637726317107081 QYMERLQLL 9 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ QYM(1)ERLQLL QYM(93)ERLQLL 0 0 1 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3206787109375 2 605.318448 1208.62234 NaN NaN NaN NaN NaN NaN NaN 55.689 1 55.62 55.12 56.12 -0.068737 0 0 0 0.010041 1 30270 30270 92.653 60.348 1 51381 8295 34724 35515 59730 59730 1401 0.02637726317107081 QYMERLQLL 9 Oxidation (M) _QYM(Oxidation (M))ERLQLL_ QYM(1)ERLQLL QYM(93)ERLQLL 0 0 1 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3204345703125 2 605.318448 1208.62234 0.65307 0.00039532 -0.15479 -9.3694E-05 0.49829 0.00030162 605.3186645933768 61.322 0.53598 55.174 54.937 55.473 -6.1478 64 26 3 0 0 0 0.0082475 3 39381 39381;39502;39652 92.653 52.704 1 113380000 51382 8295 34724 35515 59731;59732;59733 59731 1401 0.02637726317107081 QYMERLQLL 9 Unmodified _QYMERLQLL_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000495492.1_1_1:155182265-155182385:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3235473632812 2 597.320991 1192.62743 0.70071 0.00041855 0.025334 1.5132E-05 0.72604 0.00043368 597.3211688442117 64.419 0.34429 63.933 63.758 64.102 -0.48512 49 15 4 0 0 0 0.0017364 2 35108 35108;35212 134.3 62.373 1 11586000 51383 8295 34724 35516 59734;59735 59734 0.03882030179738649 QYMKATATQF 10 Unmodified _QYMKATATQF_ 0 0 0 nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;ENST00000515800.6_1_5:86667940-86686697:+|nuORF nc|ENSG00000145715|P20936-2|RASA1 nc|ENSG00000145715|P20936-2|RASA1 MSMS AL20221201_MKP_PDAC_01 4 594.7891235351562 2 594.789524 1187.56449 NaN NaN NaN NaN NaN NaN NaN 39.937 1 35.407 34.907 35.907 -4.5294 0 0 0 0.168 1 23775 23775 45.7 18.816 1 51384 5715 34725 35517 59736 59736 -0.02178535608322818 QYMKIISSF 9 Oxidation (M) _QYM(Oxidation (M))KIISSF_ QYM(1)KIISSF QYM(75)KIISSF 0 0 1 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7900390625 2 566.788992 1131.56343 0.5433 0.00030794 -2.9768 -0.0016872 -2.4335 -0.0013793 566.789005060947 48.532 0.33251 48.16 47.945 48.278 -0.37172 55 16 5 0 0 0 0.011968 2 26008 26008;26114 74.929 44.292 1 28281000 51385 8008 34726 35518 59737;59738 59737 1363 0.002912500227921555 QYMKIISSF 9 Oxidation (M) _QYM(Oxidation (M))KIISSF_ QYM(1)KIISSF QYM(71)KIISSF 0 0 1 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7889404296875 2 566.788992 1131.56343 0.46351 0.00026271 -0.38223 -0.00021665 0.081273 4.6065E-05 566.7888926169351 48.712 0.2807 48.34 48.258 48.539 -0.37172 38 15 4 0 0 0 0.013323 1 26220 26220 71.134 56.295 1 29405000 51386 8008 34726 35518 59739 59739 1363 0.002912500227921555 QYMKIISSF 9 Oxidation (M) _QYM(Oxidation (M))KIISSF_ QYM(1)KIISSF QYM(68)KIISSF 0 0 1 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7915649414062 2 566.788992 1131.56343 0.60922 0.0003453 -0.80896 -0.00045851 -0.19974 -0.00011321 566.7892865058785 48.223 0.27958 48.185 48.007 48.286 -0.038647 41 13 4 0 0 0 0.015445 1 25971 25971 68.081 46.334 1 12586000 51387 8008 34726 35518 59740 59740 1363 0.002912500227921555 QYMKIISSF 9 Oxidation (M) _QYM(Oxidation (M))KIISSF_ QYM(1)KIISSF QYM(72)KIISSF 0 0 1 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7896118164062 2 566.788992 1131.56343 0.56018 0.0003175 -0.63961 -0.00036252 -0.079434 -4.5022E-05 566.7888503553335 48.428 0.27474 48.384 48.261 48.536 -0.04369 41 13 4 0 0 0 0.013041 2 26176 26070;26176 71.922 57.084 1 13145000 51388 8008 34726 35518 59741;59742 59742 1363 0.002912500227921555 QYMKIISSF 9 Unmodified _QYMKIISSF_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7921142578125 2 558.791535 1115.56852 0.61846 0.00034559 0.67812 0.00037893 1.2966 0.00072452 558.7920389177671 61.997 0.294 61.965 61.808 62.102 -0.032787 32 14 3 0 0 0 0.024882 1 33836 33836 58.679 40.532 1 8786200 51389 8008 34726 35519 59743 59743 0.015355538854009865 QYMKIISSF 9 Unmodified _QYMKIISSF_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;ENST00000514825.1_1_5:132437411-132440125:+|nuORF ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MSMS AL20221201_MKP_PDAC_01 4 558.7921752929688 2 558.791535 1115.56852 NaN NaN NaN NaN NaN NaN NaN 67.871 1 61.695 61.195 62.195 -6.1757 0 0 0 0.044471 1 44248 44248 60.074 30.992 1 51390 8008 34726 35519 59744 59744 0.015355538854009865 QYNANHPDF 9 Unmodified _QYNANHPDF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2379760742188 2 553.238513 1104.46247 0.040584 2.2453E-05 -0.47348 -0.00026195 -0.43289 -0.00023949 553.2385717166089 29.239 0.22703 29.239 29.122 29.349 0 19 10 3 0 0 0 0.05447 1 15134 15134 43.858 26.916 1 1439700 51391 9907 34727 35520 59745 59745 -0.08558065635725143 QYNCLTQRI 9 Carbamidomethyl (C) _QYNC(Carbamidomethyl (C))LTQRI_ QYNC(1)LTQRI QYNC(120)LTQRI 0 1 0 ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF ENSG00000183520|ENST00000373014|UTP11 ENSG00000183520|ENST00000373014|UTP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2996826171875 2 598.298047 1194.58154 0.14975 8.9594E-05 -0.50752 -0.00030365 -0.35777 -0.00021405 598.2979308312117 43.254 0.28401 38.489 38.334 38.618 -4.7648 36 20 2 0 0 0 0.0047067 2 26187 26187;26327 118.07 76.113 1 30830000 51392 9155 34728 35521 59746;59747 59746 854 -0.007966150025367824 QYNFDFSKL 9 Unmodified _QYNFDFSKL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8089599609375 2 581.282389 1160.55022 0.36383 0.00021149 -0.78274 -0.00045499 -0.41891 -0.0002435 581.2820276025218 67.117 0.18818 66.634 66.57 66.758 -0.48269 14 8 2 0 0 0 0.14565 1 36683 36683 24.991 14.917 1 1795100 51393 5401 34729 35522 59748 59748 -0.023628647649502454 QYNMNFEKL 9 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ QYNM(1)NFEKL QYNM(76)NFEKL 0 0 1 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.77783203125 2 601.779156 1201.54376 0.30172 0.00018157 0.20537 0.00012358 0.50708 0.00030515 601.7794388024217 38.711 0.29679 38.711 38.515 38.811 0 54 13 5 0 0 0 0.011671 2 20632 20632;20737 75.761 48.877 1 37550000 51394 7391 34730 35523 59749;59750 59749 1277 -0.048951259879686404 QYNMNFEKL 9 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ QYNM(1)NFEKL QYNM(60)NFEKL 0 0 1 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7794189453125 2 601.779156 1201.54376 0.22335 0.00013441 0.29948 0.00018022 0.52283 0.00031463 601.7802284174329 38.916 0.61082 38.916 38.77 39.381 0 79 28 5 0 0 0 0.023481 1 20849 20849 60.074 25.971 1 33565000 51395 7391 34730 35523 59751 59751 1277 -0.048951259879686404 QYNMNFEKL 9 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ QYNM(1)NFEKL QYNM(44)NFEKL 0 0 1 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7782592773438 2 601.779156 1201.54376 -0.0075717 -4.5565E-06 -0.97527 -0.0005869 -0.98284 -0.00059145 602.279840564395 39.041 0.25253 38.754 38.608 38.861 -0.28687 24 10 4 0 0 0 0.05483 1 20588 20588 43.772 23.319 1 4387100 51396 7391 34730 35523 59752 59752 1277 -0.048951259879686404 QYNMNFEKL 9 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ QYNM(1)NFEKL QYNM(58)NFEKL 0 0 1 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.779541015625 2 601.779156 1201.54376 -0.013324 -8.0181E-06 -0.37038 -0.00022289 -0.38371 -0.00023091 601.7788566334492 39.271 0.19772 38.984 38.882 39.08 -0.28687 15 9 2 0 0 0 0.025842 1 20710 20710 57.722 32.323 1 3994100 51397 7391 34730 35523 59753 59753 1277 -0.048951259879686404 QYNMNFEKL 9 Oxidation (M) _QYNM(Oxidation (M))NFEKL_ QYNM(1)NFEKL QYNM(83)NFEKL 0 0 1 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7800903320312 2 601.779156 1201.54376 0.034871 2.0984E-05 -0.3193 -0.00019215 -0.28443 -0.00017116 601.7791544943414 43.375 0.73449 38.61 38.419 39.153 -4.7648 111 48 3 0 0 0 0.0094097 4 26242 26242;26378;26509;26652 82.529 55.646 1 45184000 51398 7391 34730 35523 59754;59755;59756;59757 59754 1277 -0.048951259879686404 QYNMNFEKL 9 Unmodified _QYNMNFEKL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7813720703125 2 593.781699 1185.54884 0.47599 0.00028263 -1.4889 -0.00088409 -1.0129 -0.00060146 593.7811708516927 52.733 0.25967 52.281 52.159 52.419 -0.45173 37 12 4 0 0 0 0.0098373 1 28509 28509 96.936 54.841 1 6223000 51399 7391 34730 35524 59758 59758 -0.036508221253598094 QYNMNFEKL 9 Unmodified _QYNMNFEKL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7;nc|ENSG00000165806|P55210-2|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7816162109375 2 593.781699 1185.54884 0.041365 2.4562E-05 -0.14489 -8.6035E-05 -0.10353 -6.1473E-05 593.7816867503412 58.129 0.44167 52.102 51.905 52.346 -6.0275 60 23 3 0 0 0 0.010362 2 37139 37139;37268 96.367 58.191 1 105180000 51400 7391 34730 35524 59759;59760 59759 -0.036508221253598094 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.193359375 3 379.192957 1134.55704 -0.37352 -0.00014163 0.071364 2.7061E-05 -0.30215 -0.00011457 379.1930206696803 22.214 0.3788 22.214 22.065 22.444 0 67 18 5 0 0 0 0.047788 2 11249 11249;11345 45.7 31.294 1 216560000 51401 6097 34731 35525 59761;59762 59761 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2871704101562 2 568.285797 1134.55704 -0.10031 -5.7007E-05 0.547 0.00031085 0.44669 0.00025385 568.2861758775744 22.214 0.22262 22.214 22.102 22.324 0 32 10 4 0 0 0 0.0082548 1 11265 11265 108 80.368 1 8236900 51402 6097 34731 35525 59763 59763 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1932678222656 3 379.192957 1134.55704 -0.15968 -6.0549E-05 0.38292 0.0001452 0.22324 8.4652E-05 379.19311248562235 22.129 0.33274 22.152 21.982 22.315 0.022896 49 14 5 0 0 0 0.10247 2 11205 11205;11310 32.786 24.341 1 34996000 51403 6097 34731 35525 59764;59765 59764 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2867431640625 2 568.285797 1134.55704 0.0022595 1.284E-06 0.61735 0.00035083 0.61961 0.00035211 568.2859584169973 22.122 0.2207 22.145 22.029 22.249 0.022896 20 9 3 0 0 0 0.01958 1 11241 11241 71.134 58.602 1 1556100 51404 6097 34731 35525 59766 59766 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.1934814453125 3 379.192957 1134.55704 0.13842 5.2487E-05 0.92138 0.00034938 1.0598 0.00040187 379.1933258544062 22.083 0.26656 22.097 21.965 22.232 0.013796 30 10 4 0 0 0 0.078314 1 11311 11311 38.176 27.86 1 9793300 51405 6097 34731 35525 59767 59767 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.1931762695312 3 379.192957 1134.55704 0.6312 0.00023935 -1.0967 -0.00041586 -0.46549 -0.00017651 379.1924853978079 24.799 0.56558 21.916 21.617 22.183 -2.8831 140 38 5 0 0 0 0.05483 3 13418 13418;13524;13633 43.772 32.278 1 1278800000 51406 6097 34731 35525 59768;59769;59770 59768 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2852172851562 2 568.285797 1134.55704 0.29078 0.00016524 -0.19542 -0.00011105 0.095358 5.4191E-05 568.2857076802178 24.798 0.42189 21.915 21.723 22.144 -2.8831 83 26 4 0 0 0 0.00023314 2 13455 13455;13569 171.47 149.99 1 141090000 51407 6097 34731 35525 59771;59772 59771 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.8890075683594 3 379.192957 1134.55704 0.81034 0.00030727 1.6918 0.00064152 2.5022 0.0009488 379.1936146337372 26.347 0.084444 23.396 23.374 23.459 -2.9511 6 4 2 0 0 0 0.13704 1 14515 14515 32.786 18.38 1 17780000 51408 6097 34731 35525 59773 59773 -0.004855070937082928 QYNPHVHQL 9 Unmodified _QYNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.285797 1134.55704 0.29724 0.00016892 1.625 0.00092345 1.9222 0.0010924 568.2866561681973 22.083 0.1402 22.096 22.017 22.157 0.013796 0.003719 0.0017109 NaN 171.47 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 471820 51409 6097 34731 35525 -0.004855070937082928 QYNPKFQTL 9 Unmodified _QYNPKFQTL_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7984008789062 2 569.798206 1137.58186 -0.25878 -0.00014745 0.65338 0.0003723 0.39461 0.00022485 569.7982778981025 41.08 0.21325 41.08 41.005 41.218 0 23 10 3 0 0 0 0.091924 1 22147 22147 46.021 29.079 1 4750600 51410 3229;16326 34732 35526 59774 59774 0.018571279890011283 QYNPKFQTL 9 Unmodified _QYNPKFQTL_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-5|YY1AP1;nc|ENSG00000163374|Q9H869-6|YY1AP1;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000163374|Q9H869-9|YY1AP1 nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8016357421875 2 569.798206 1137.58186 0.73656 0.00041969 -0.21404 -0.00012196 0.52252 0.00029773 569.798410750183 46.031 0.46608 41.076 40.848 41.315 -4.9549 117 30 5 0 0 0 0.0020017 2 28261 28261;28392 147.06 85.702 1 147740000 51411 3229;16326 34732 35526 59775;59776 59775 0.018571279890011283 QYNTYPIKL 9 Unmodified _QYNTYPIKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3093872070312 2 570.308406 1138.60226 1.0884 0.00062074 1.0885 0.00062076 2.1769 0.0012415 570.3087223900469 54.512 0.28931 54.512 54.352 54.641 0 38 12 4 0 0 0 0.07087 1 30238 30238 39.95 21.815 1 6194700 51412 801 34733 35527 59777 59777 0.038502986487856106 QYNTYPIKL 9 Unmodified _QYNTYPIKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3089599609375 2 570.308406 1138.60226 0.38595 0.00022011 0.2999 0.00017104 0.68585 0.00039114 570.3087035379423 55.037 0.34315 54.559 54.369 54.712 -0.47798 62 16 5 0 0 0 0.020973 2 29868 29769;29868 62.573 36.053 1 43660000 51413 801 34733 35527 59778;59779 59779 0.038502986487856106 QYNTYPIKL 9 Unmodified _QYNTYPIKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3063354492188 2 570.308406 1138.60226 0.30817 0.00017575 -0.52925 -0.00030184 -0.22108 -0.00012609 570.3082821363191 54.683 0.28154 54.616 54.484 54.765 -0.066936 32 13 3 0 0 0 0.0090524 1 29690 29690 85.642 60.242 1 5473300 51414 801 34733 35527 59780 59780 0.038502986487856106 QYNTYPIKL 9 Unmodified _QYNTYPIKL_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3087768554688 2 570.308406 1138.60226 1.0616 0.00060542 -0.55509 -0.00031657 0.50648 0.00028885 570.3082804860285 60.125 0.67064 54.011 53.62 54.29 -6.1147 86 36 3 0 0 0 0.0039711 3 38704 38567;38704;38843 121.53 79.44 1 209550000 51415 801 34733 35527 59781;59782;59783 59782 0.038502986487856106 QYNTYPIKLF 10 Unmodified _QYNTYPIKLF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.842041015625 2 643.842613 1285.67067 0.25349 0.00016321 -0.47243 -0.00030417 -0.21894 -0.00014096 643.8421056793367 72.911 0.30649 72.953 72.782 73.089 0.041725 36 14 3 0 0 0 0.027759 2 40116 40116;40226 69.105 44.114 1 11834000 51416 801 34734 35528 59784;59785 59784 0.03926543228635637 QYNTYPIKLF 10 Unmodified _QYNTYPIKLF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.8427124023438 2 643.842613 1285.67067 0.82461 0.00053092 -0.82656 -0.00053218 -0.0019527 -1.2572E-06 643.8425813351473 83.714 0.95102 77.538 77.045 77.996 -6.1757 75 50 2 0 0 0 0.018732 2 54968 54968;55105 76.825 58.678 1 12524000 51417 801 34734 35528 59786;59787 59786 0.03926543228635637 QYNTYPIKLF 10 Unmodified _QYNTYPIKLF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 643.3345947265625 2 643.842613 1285.67067 0.7741 0.0004984 -0.83448 -0.00053727 -0.060379 -3.8874E-05 643.8422425590476 98.515 0.17427 92.34 92.253 92.427 -6.1757 22 12 2 0 0 0 0.19064 1 65322 65322 32.786 13.529 1 94399000 51418 801 34734 35528 59788 59788 0.03926543228635637 QYNTYPIKLF 10 Unmodified _QYNTYPIKLF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 643.842613 1285.67067 0.51146 0.0003293 -0.57503 -0.00037023 -0.063573 -4.0931E-05 644.3437940253614 73.446 0.15232 72.97 72.913 73.066 -0.47588 0.0084363 -0.00010976 NaN 69.105 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 326010 51419 801 34734 35528 0.03926543228635637 QYPEHISNI 9 Unmodified _QYPEHISNI_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.77197265625 2 550.772188 1099.52982 0.71821 0.00039557 -1.1426 -0.00062931 -0.42438 -0.00023373 550.7711343449777 36.328 0.49652 36.328 36.01 36.507 0 79 24 4 0 0 0 0.094149 1 19246 19246 34.402 9.7278 1 263790000 51420 3760 34735 35529 59789 59789 -0.015960354247681607 QYPEHISNII 10 Unmodified _QYPEHISNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.314453125 2 607.31422 1212.61389 -0.19769 -0.00012006 0.087494 5.3137E-05 -0.1102 -6.6925E-05 607.3145698245946 52.418 0.28572 52.418 52.223 52.508 0 26 12 3 0 0 0 0.20771 1 28982 28982 45.7 23.953 1 2463000 51421 3760 34736 35530 59790 59790 0.01608495672121535 QYPEHISNII 10 Unmodified _QYPEHISNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.313720703125 2 607.31422 1212.61389 0.35572 0.00021603 -0.79683 -0.00048393 -0.44111 -0.00026789 607.3140105484714 52.885 0.25488 52.433 52.299 52.554 -0.45173 27 12 3 0 0 0 0.43662 1 28569 28569 29.082 12.139 1 3664700 51422 3760 34736 35530 59791 59791 0.01608495672121535 QYPEHISNII 10 Unmodified _QYPEHISNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.31591796875 2 607.31422 1212.61389 1.1575 0.00070299 -0.66888 -0.00040622 0.48866 0.00029677 607.3139821154617 58.703 0.51791 52.628 52.387 52.905 -6.0745 50 28 3 0 0 0 0.0062184 2 37523 37523;37656 99.755 37.893 1 19762000 51423 3760 34736 35530 59792;59793 59792 0.01608495672121535 QYPELSDHEF 10 Unmodified _QYPELSDHEF_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.7771606445312 2 632.777667 1263.54078 -0.20596 -0.00013033 -0.031044 -1.9644E-05 -0.23701 -0.00014997 632.7776546223738 48.31 0.21964 48.31 48.272 48.491 0 13 10 2 0 0 0 0.27276 1 26513 26513 29.082 14.243 1 2569700 51424 6239;13571 34737 35531 59794 59794 -0.08044677841144221 QYPEVKEFF 9 Unmodified _QYPEVKEFF_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7926025390625 2 593.792589 1185.57063 0.044383 2.6355E-05 0.40422 0.00024002 0.4486 0.00026638 593.7924857584932 62.772 0.35324 62.772 62.589 62.942 0 23 14 2 0 0 0 0.29507 2 34982 34982;35103 18.146 7.3224 1 903850 51425 9023 34738 35532 59795;59796 59795 -0.0147369410515239 QYPEVKEFF 9 Unmodified _QYPEVKEFF_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7921142578125 2 593.792589 1185.57063 0.39372 0.00023379 -0.41464 -0.00024621 -0.020923 -1.2424E-05 593.7922307302917 63.276 0.27995 62.789 62.689 62.969 -0.48617 22 12 2 0 0 0 0.29507 1 34508 34508 18.146 9.4009 1 1569300 51426 9023 34738 35532 59797 59797 -0.0147369410515239 QYPFPLPVF 9 Unmodified _QYPFPLPVF_ 0 0 0 ENSG00000145414|ENST00000274054|NAF1 ENSG00000145414|ENST00000274054|NAF1 ENSG00000145414|ENST00000274054|NAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2992553710938 2 554.29731 1106.58007 0.81981 0.00045442 2.7733 0.0015372 3.5931 0.0019917 554.2990418503591 101.59 0.21169 95.412 95.291 95.503 -6.1757 31 10 4 0 0 0 0.023164 1 68162 68162 60.39 28.273 1 111850000 51427 5695 34739 35533 59798 59798 0.031041189710322215 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.787353515625 2 533.787641 1065.56073 0.37538 0.00020037 -0.64399 -0.00034376 -0.26861 -0.00014338 533.7872118992664 52.69 0.56919 52.249 52.016 52.585 -0.44062 91 28 4 0 0 0 0.036857 2 28556 28450;28556 51.63 31.176 1 81740000 51428 1536 34740 35534 59799;59800 59800 0.030571626801247476 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7875366210938 2 533.787641 1065.56073 0.65848 0.00035149 1.5775 0.00084206 2.236 0.0011935 533.7873327744229 52.272 0.69059 52.213 51.917 52.608 -0.058918 128 33 6 0 0 0 0.047788 3 28363 28262;28363;28465 45.7 21.679 1 157390000 51429 1536 34740 35534 59801;59802;59803 59802 0.030571626801247476 QYPGRSLVF 9 Unmodified _QYPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7880859375 2 533.787641 1065.56073 0.68512 0.00036571 0.2761 0.00014738 0.96122 0.00051309 533.7877169489415 57.736 0.8429 51.708 51.313 52.156 -6.0275 156 46 5 0 0 0 0.040683 4 37058 36792;36919;37058;37191 49.554 25.534 1 969400000 51430 1536 34740 35534 59804;59805;59806;59807 59806 0.030571626801247476 QYPLQTFAI 9 Unmodified _QYPLQTFAI_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS;ENST00000462436.1_1_7:97484616-97487685:-|nuORF nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2847900390625 2 540.78985 1079.56515 0.40725 0.00022024 -3.2847 -0.0017764 -2.8775 -0.0015561 541.2875861526626 82.703 0.65091 82.206 81.816 82.467 -0.49751 95 27 5 0 0 0 0.06187 2 45259 45176;45259 42.095 16.695 1 2636800 51431 1033 34741 35535 59808;59809 59809 0.028546271030336356 QYPNPLPVL 9 Unmodified _QYPNPLPVL_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7938232421875 2 520.792392 1039.57023 0.85022 0.00044279 0.61663 0.00032113 1.4668 0.00076392 520.792697861267 80.143 0.55465 79.654 79.377 79.932 -0.48932 75 21 4 0 0 0 0.023164 2 43819 43819;43925 60.39 37.241 1 6046700 51432 7544 34742 35536 59810;59811 59810 0.05202930965651831 QYPNPLPVL 9 Unmodified _QYPNPLPVL_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7938842773438 2 520.792392 1039.57023 1.1453 0.00059646 0.19624 0.0001022 1.3415 0.00069866 520.7925241720775 87.217 0.52647 81.041 80.751 81.277 -6.1757 61 28 3 0 0 0 0.023164 2 57447 57447;57576 60.39 33.506 1 33588000 51433 7544 34742 35536 59812;59813 59812 0.05202930965651831 QYPNPLPVL 9 Unmodified _QYPNPLPVL_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39 ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.792392 1039.57023 0.38467 0.00020033 0.34353 0.00017891 0.7282 0.00037924 520.7925426213961 79.638 0.37313 79.638 79.446 79.819 0 -0.0079522 -0.00016464 NaN 60.39 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 561870 51434 7544 34742 35536 0.05202930965651831 QYPNQPTRF 9 Unmodified _QYPNQPTRF_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.785400390625 2 575.78563 1149.55671 0.2285 0.00013157 0.67815 0.00039047 0.90665 0.00052204 575.7857961474682 31.582 0.27621 31.582 31.463 31.739 0 19 13 2 0 0 0 0.06294 1 16459 16459 41.84 21.386 1 1349300 51435 9381 34743 35537 59814 59814 -0.01208926813569633 QYPNQPTRF 9 Unmodified _QYPNQPTRF_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.78662109375 2 575.78563 1149.55671 0.29476 0.00016972 1.4201 0.00081769 1.7149 0.00098742 575.7863631391967 31.515 0.21928 31.412 31.333 31.553 -0.10269 14 8 2 0 0 0 0.021948 1 16406 16406 61.602 32.52 1 1974900 51436 9381 34743 35537 59815 59815 -0.01208926813569633 QYPNQPTRF 9 Unmodified _QYPNQPTRF_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 575.78563 1149.55671 0.65519 0.00037725 0.88187 0.00050777 1.5371 0.00088501 575.7864848484096 35.437 0.31711 31.244 31.076 31.394 -4.1928 -0.16878 6.4386E-06 NaN 61.602 29 19 2 NaN NaN NaN NaN 0 NaN NaN 0 9996200 51437 9381 34743 35537 -0.01208926813569633 QYPPVNWAALL 11 Unmodified _QYPPVNWAALL_ 0 0 0 ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD ENSG00000188352|ENST00000338382|FOCAD MSMS AL20221201_MKP_PDAC_01 4 636.3432006835938 2 636.342781 1270.67101 NaN NaN NaN NaN NaN NaN NaN 100.98 1 94.801 94.301 95.301 -6.1757 0 0 0 0.080715 1 67661 67661 53.833 32.296 1 51438 9652 34744 35538 59816 59816 0.04649962948519715 QYPRLREE 8 Unmodified _QYPRLREE_ 0 0 0 nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000106976|Q05193-5|DNM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.283447265625 2 545.78563 1089.55671 -0.41492 -0.00022645 0.15147 8.2669E-05 -0.26345 -0.00014379 545.7860439894924 17.152 0.12437 17.152 17.047 17.171 0 41 27 2 0 0 0 8.7369 1 8377 8377 0.69038 0.69038 1 602510 51439 2467 34745 35539 59817 59817 0.01551073186396934 QYPRPWGRG 9 Unmodified _QYPRPWGRG_ 0 0 0 ENST00000266542.8_1_12:7249524-7252328:-|nuORF ENST00000266542.8_1_12:7249524-7252328:-|nuORF ENST00000266542.8_1_12:7249524-7252328:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8614196777344 3 372.86143 1115.56246 0.19521 7.2787E-05 0.2092 7.8001E-05 0.40441 0.00015079 372.8613937471642 26.344 0.21642 26.371 26.279 26.495 0.026951 21 9 3 0 0 0 0.4887 1 13664 13664 8.1555 1.9212 1 9135500 51440 11343 34746 35540 59818 59818 0.009302164887230902 QYPSICPRL 9 Carbamidomethyl (C) _QYPSIC(Carbamidomethyl (C))PRL_ QYPSIC(1)PRL QYPSIC(75)PRL 0 1 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2916259765625 2 567.292233 1132.56991 0.70242 0.00039848 -1.1744 -0.00066623 -0.47198 -0.00026775 567.2914961948132 56.766 0.75311 50.789 50.446 51.2 -5.9769 131 44 4 0 0 0 0.011968 2 36063 36063;36199 74.929 24.074 1 467670000 51441 2059 34747 35541 59819;59820 59819 202 0.008931879741567172 QYPSQPQRF 9 Unmodified _QYPSQPQRF_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7860717773438 2 575.78563 1149.55671 -0.048745 -2.8067E-05 1.3949 0.00080319 1.3462 0.00077512 575.7863506414 29.406 0.22785 29.406 29.262 29.489 0 30 10 4 0 0 0 0.013041 1 15198 15198 71.922 31.973 1 7641400 51442 6687 34748 35542 59821 59821 -0.01208926813569633 QYPSQPQRF 9 Unmodified _QYPSQPQRF_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.78564453125 2 575.78563 1149.55671 NaN NaN NaN NaN NaN NaN NaN 29.357 1 29.294 28.794 29.794 -0.062159 0 0 0 0.00011706 1 15182 15182 139.14 71.058 1 51443 6687 34748 35542 59822 59822 -0.01208926813569633 QYPSQPQRF 9 Unmodified _QYPSQPQRF_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7864379882812 2 575.78563 1149.55671 0.53877 0.00031021 1.165 0.00067081 1.7038 0.00098102 575.7860634188855 32.907 0.37326 29.05 28.814 29.187 -3.8562 49 21 3 0 0 0 0.094149 1 18761 18761 34.402 16.255 1 27994000 51444 6687 34748 35542 59823 59823 -0.01208926813569633 QYPSQPQRF 9 Unmodified _QYPSQPQRF_ 0 0 0 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 ENSG00000160113|ENST00000291442|NR2F6 MSMS AL20221201_MKP_PDAC_01 4 575.7860107421875 2 575.78563 1149.55671 NaN NaN NaN NaN NaN NaN NaN 33.051 1 29.195 28.695 29.695 -3.8562 0 0 0 0.12337 1 18920 18920 39.957 19.504 1 51445 6687 34748 35542 59824 59824 -0.01208926813569633 QYPVFPWVL 9 Unmodified _QYPVFPWVL_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000128815|Q6ZS81-5|WDFY4 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20221201_MKP_PDAC_01 4 574.8112182617188 2 574.810585 1147.60662 NaN NaN NaN NaN NaN NaN NaN 101.84 1 95.665 95.165 96.165 -6.1757 0 0 0 0.10545 1 68362 68362 42.095 0 1 51446 6755;8268;4092 34749 35543 59825 59825 0.03871807862356036 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.33203125 2 548.331685 1094.64882 0.50775 0.00027842 -0.28045 -0.00015378 0.2273 0.00012464 548.3315123938365 82.742 0.92525 82.244 81.717 82.642 -0.49751 128 38 4 0 0 0 0.12424 3 45152 45152;45255;45352 42.968 30.436 1 19476000 51447 934 34750 35544 59826;59827;59828 59826 0.10527783270754298 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3319702148438 2 548.331685 1094.64882 1.7322 0.0009498 -1.1866 -0.00065064 0.54559 0.00029916 548.3310368233991 81.904 1.0183 81.964 81.48 82.498 0.059929 133 40 4 0 0 0 0.07916 4 45450 45134;45233;45341;45450 42.968 22.097 1 92813000 51448 934 34750 35544 59829;59830;59831;59832 59832 0.10527783270754298 QYPVIIHLI 9 Unmodified _QYPVIIHLI_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3323974609375 2 548.331685 1094.64882 1.3336 0.00073124 -0.54874 -0.00030089 0.78484 0.00043035 548.3313689471046 97.612 0.62474 91.436 91.062 91.687 -6.1757 132 37 4 0 0 0 0.12424 4 64504 64479;64504;64626;64742 42.968 30.436 1 725940000 51449 934 34750 35544 59833;59834;59835;59836 59834 0.10527783270754298 QYPVIIHLIW 10 Unmodified _QYPVIIHLIW_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.37158203125 2 641.371341 1280.72813 0.94887 0.00060858 0.49852 0.00031974 1.4474 0.00092831 641.3717016149961 100.43 0.17286 94.252 94.157 94.33 -6.1757 32 10 4 0 0 0 0.060508 1 67113 67113 77.984 60.871 1 159100000 51450 934 34751 35545 59837 59837 0.09899430224891148 QYPVLVLLY 9 Unmodified _QYPVLVLLY_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|372|2|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|372|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.326416015625 2 554.326068 1106.63758 0.68543 0.00037995 0.64765 0.00035901 1.3331 0.00073896 554.3264149990301 86.858 0.27574 86.354 86.242 86.517 -0.50318 19 10 3 0 0 0 0.43515 1 47532 47532 15.847 15.847 1 750960 + 51451 29379 34752 35546 59838 59838 0.08852961176603458 QYPVNHLVTF 10 Unmodified _QYPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3173217773438 2 609.319306 1216.62406 -0.012582 -7.6663E-06 -0.51242 -0.00031223 -0.52501 -0.0003199 609.3181115949697 60.503 0.36328 60.013 59.847 60.21 -0.48932 35 17 3 0 0 0 0.54083 1 32997 32997 21.537 9.0054 1 7369400 51452 4289 34753 35547 59839 59839 0.02441103397381994 QYPVNHLVTF 10 Unmodified _QYPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3185424804688 2 609.319306 1216.62406 0.48909 0.00029801 1.4705 0.00089599 1.9596 0.001194 609.3203356197222 65.876 0.51962 59.7 59.525 60.045 -6.1757 52 30 2 0 0 0 0.022716 2 42758 42758;42908 85.642 45.692 1 25491000 51453 4289 34753 35547 59840;59841 59840 0.02441103397381994 QYPVNHLVTF 10 Unmodified _QYPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.319306 1216.62406 0.44183 0.00026922 -0.85606 -0.00052161 -0.41423 -0.0002524 609.3183633232159 60.114 0.24392 60.061 59.938 60.182 -0.053059 0.13606 -0.0013123 NaN 85.642 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3971000 51454 4289 34753 35547 0.02441103397381994 QYPVYWDHLEF 11 Unmodified _QYPVYWDHLEF_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 748.8468017578125 2 748.845884 1495.67722 0.43844 0.00032832 0.95196 0.00071287 1.3904 0.0010412 748.8465002874935 82.038 0.39772 81.543 81.369 81.767 -0.4952 49 15 4 0 0 0 0.017265 2 44969 44878;44969 60.074 53.868 1 8216000 51455 1559 34754 35548 59842;59843 59843 -0.05079563610615878 QYPVYWDHLEF 11 Unmodified _QYPVYWDHLEF_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 748.8473510742188 2 748.845884 1495.67722 1.6549 0.0012393 0.60733 0.00045479 2.2623 0.0016941 749.3481366243697 81.471 0.35791 81.531 81.371 81.729 0.059929 39 13 4 0 0 0 0.046614 2 45028 45028;45136 51.63 36.792 1 8955500 51456 1559 34754 35548 59844;59845 59844 -0.05079563610615878 QYPVYWDHLEF 11 Unmodified _QYPVYWDHLEF_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 749.3477172851562 2 748.845884 1495.67722 1.0148 0.00075995 0.067525 5.0566E-05 1.0824 0.00081052 748.8459152291967 94.748 0.5902 88.572 88.282 88.872 -6.1757 126 33 5 0 0 0 0.00047726 3 62625 62625;62748;62871 88.954 74.548 1 168400000 51457 1559 34754 35548 59846;59847;59848 59846 -0.05079563610615878 QYQDKSREY 9 Unmodified _QYQDKSREY_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MSMS AL20221201_MKP_PDAC_01 4 608.783203125 2 608.783284 1215.55202 NaN NaN NaN NaN NaN NaN NaN 45.793 1 40.838 40.338 41.338 -4.9549 0 0 0 0.36554 1 28176 28176 21.747 3.6003 1 51458 2346 34755 35549 59849 59849 -0.047138557469679654 QYQDYTFL 8 Unmodified _QYQDYTFL_ 0 0 0 REV__ENSG00000181092|ENST00000320741|ADIPOQ REV__ENSG00000181092|ENST00000320741|ADIPOQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.24755859375 2 539.248015 1076.48148 NaN NaN NaN NaN NaN NaN NaN 71.598 1 71.598 71.098 72.098 0 0 0 0 0.97348 1 39879 39879 5.7604 0 1 + 51459 23190 34756 35550 59850 59850 -0.053705290646803405 QYQEAFQKL 9 Unmodified _QYQEAFQKL_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7955322265625 2 577.795663 1153.57677 0.36001 0.00020801 -0.085866 -4.9613E-05 0.27415 0.0001584 577.7953323362675 42.231 0.27125 42.231 42.068 42.339 0 24 13 2 0 0 0 0.0024112 1 22813 22813 129.77 77.504 1 5685900 51460 1348 34757 35551 59851 59851 0.006128241263922973 QYQEAFQKL 9 Unmodified _QYQEAFQKL_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2940673828125 2 577.795663 1153.57677 0.80062 0.0004626 0.21448 0.00012392 1.0151 0.00058652 577.7957543078779 47.102 0.32117 42.021 41.919 42.241 -5.0805 34 24 2 0 0 0 8.2399E-06 2 29208 29171;29208 155.03 105.09 1 22297000 51461 1348 34757 35551 59852;59853 59853 0.006128241263922973 QYQELVLSM 9 Unmodified _QYQELVLSM_ 0 0 0 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7772827148438 2 555.778625 1109.5427 0.2588 0.00014384 -3.8679 -0.0021497 -3.6091 -0.0020059 555.7761172170649 65.944 0.31522 65.459 65.314 65.629 -0.48428 22 13 2 0 0 0 0.23158 1 35982 35982 20.454 1.1966 1 4287500 51462 1066 34758 35552 59854 59854 -0.007693403568964641 QYQIYSESF 9 Unmodified _QYQIYSESF_ 0 0 0 ENSG00000177570|ENST00000314727|SAMD12 ENSG00000177570|ENST00000314727|SAMD12 ENSG00000177570|ENST00000314727|SAMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7642211914062 2 582.764029 1163.5135 0.078771 4.5905E-05 0.67559 0.00039371 0.75436 0.00043962 582.7639698520262 56.611 0.32171 56.611 56.424 56.746 0 23 13 2 0 0 0 0.052168 1 31460 31460 44.407 26.272 1 3488700 51463 8693 34759 35553 59855 59855 -0.0617116138153051 QYQKILERL 9 Unmodified _QYQKILERL_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1;nc|ENSG00000100324|Q15750-2|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.568115234375 3 397.567912 1189.68191 0.57921 0.00023028 -0.11438 -4.5473E-05 0.46483 0.0001848 397.56790749303025 46.504 0.2429 41.424 41.215 41.458 -5.0805 30 20 2 0 0 0 0.12357 1 28679 28679 30.703 16.298 1 54722000 51464 1794 34760 35554 59856 59856 0.09465365322807884 QYQKMHIF 8 Unmodified _QYQKMHIF_ 0 0 0 ENSG00000214891|ENST00000617704|TRIM64C ENSG00000214891|ENST00000617704|TRIM64C ENSG00000214891|ENST00000617704|TRIM64C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2770385742188 2 547.776219 1093.53789 0.29718 0.00016279 0.71322 0.00039068 1.0104 0.00055347 548.2763400196797 83.303 0.21424 83.303 83.202 83.417 0 13 9 2 0 0 0 0.80676 1 46219 46219 2.5775 0.51773 1 260340 51465 10512 34761 35555 59857 59857 -0.0051417970898910426 QYQKVPVLF 9 Unmodified _QYQKVPVLF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3222045898438 2 561.321317 1120.62808 0.59625 0.00033469 -0.29825 -0.00016742 0.298 0.00016727 561.3213121749678 63.754 0.48292 63.268 62.948 63.431 -0.48617 72 23 4 0 0 0 0.0086179 2 34704 34704;34810 101.72 67.62 1 41392000 51466 8367 34762 35556 59858;59859 59858 0.07259192891069688 QYQKVPVLF 9 Unmodified _QYQKVPVLF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.322021484375 2 561.321317 1120.62808 0.91 0.0005108 -0.44115 -0.00024763 0.46885 0.00026317 561.3209936288633 63.332 0.39219 63.31 63.049 63.442 -0.021614 66 19 4 0 0 0 0.0094915 2 34556 34556;34668 81.864 47.762 1 109060000 51467 8367 34762 35556 59860;59861 59860 0.07259192891069688 QYQKVPVLF 9 Unmodified _QYQKVPVLF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3218383789062 2 561.321317 1120.62808 0.86065 0.0004831 0.088886 4.9893E-05 0.94953 0.00053299 561.3209998613895 68.131 1.0873 61.955 61.546 62.633 -6.1757 157 63 4 0 0 0 0.0086179 5 44569 44307;44443;44569;44712;44844 89.427 45.568 1 348410000 51468 8367 34762 35556 59862;59863;59864;59865;59866 59864 0.07259192891069688 QYQKVPVLF 9 Unmodified _QYQKVPVLF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3217163085938 2 561.321317 1120.62808 1.2249 0.00068757 -1.6828 -0.00094461 -0.45792 -0.00025704 561.3219929471267 68.999 0.42469 62.823 62.537 62.962 -6.1757 45 22 3 0 0 0 0.052168 1 44974 44974 44.407 6.433 1 25599000 51469 8367 34762 35556 59867 59867 0.07259192891069688 QYQLQHLTL 9 Unmodified _QYQLQHLTL_ 0 0 0 ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.3125610351562 2 572.31148 1142.60841 0.39867 0.00022816 0.28968 0.00016579 0.68835 0.00039395 572.3116243586142 57.039 0.30393 56.553 56.39 56.694 -0.48554 25 13 2 0 0 0 0.0087923 1 30959 30959 128.37 70.643 1 17540000 51470 8992 34763 35557 59868 59868 0.0428081688032762 QYQLQHLTL 9 Unmodified _QYQLQHLTL_ 0 0 0 ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3111572265625 2 572.31148 1142.60841 0.72585 0.00041541 -0.2576 -0.00014743 0.46825 0.00026798 572.3112700480245 62.263 0.55482 56.087 55.823 56.378 -6.1757 51 31 2 0 0 0 0.0026383 2 40065 40065;40200 155.03 83.892 1 26996000 51471 8992 34763 35557 59869;59870 59869 0.0428081688032762 QYQLQHLTL 9 Unmodified _QYQLQHLTL_ 0 0 0 ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR ENSG00000181751|ENST00000319933|MACIR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 572.31148 1142.60841 0.23822 0.00013633 1.998 0.0011435 2.2362 0.0012798 572.3128118697055 56.561 0.18834 56.561 56.474 56.662 0 0.0037844 0.0016295 NaN 128.37 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 831250 51472 8992 34763 35557 0.0428081688032762 QYQMIFSIW 9 Oxidation (M) _QYQM(Oxidation (M))IFSIW_ QYQM(1)IFSIW QYQM(54)IFSIW 0 0 1 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000523426.1_1_8:54669186-54714423:-|nuORF nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2965087890625 2 616.294442 1230.57433 2.2163 0.0013659 0.37781 0.00023284 2.5941 0.0015987 616.2947944017576 94.268 0.43427 94.283 94.029 94.464 0.014244 35 15 3 0 0 0 0.03327 1 52363 52363 53.576 28.176 1 4945700 51473 680 34764 35558 59871 59871 104 -0.031733476029558005 QYQMIFSIW 9 Unmodified _QYQMIFSIW_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000523426.1_1_8:54669186-54714423:-|nuORF nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.2966918945312 2 608.296985 1214.57942 0.76541 0.00046559 1.9295 0.0011737 2.695 0.0016393 608.2969536688556 101.31 0.12887 95.139 95.064 95.192 -6.1757 12 7 3 0 0 0 0.095405 1 67969 67969 34.102 12.356 1 15962000 51474 680 34764 35559 59872 59872 -0.019290437403242322 QYQNVLTLW 9 Unmodified _QYQNVLTLW_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS AL20221201_MKP_PDAC_01 4 582.8074951171875 2 582.806031 1163.59751 NaN NaN NaN NaN NaN NaN NaN 99.169 1 92.994 92.494 93.494 -6.1757 0 0 0 0.030047 1 65963 65963 85.357 54.088 1 51475 6155;16276;16275 34765 35560 59873 59873 0.02225414506051493 QYQNYYAQW 9 Unmodified _QYQNYYAQW_ 0 0 0 nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.2755737304688 2 632.275095 1262.53564 -1.2513 -0.00079115 1.4457 0.00091411 0.19447 0.00012296 632.276066736271 56.366 0.2125 55.881 55.728 55.941 -0.48554 18 10 3 0 0 0 0.038285 1 30581 30581 50.855 37.813 1 2089300 51476 8882 34766 35561 59874 59874 -0.08512936913120939 QYQNYYAQW 9 Unmodified _QYQNYYAQW_ 0 0 0 nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.276611328125 2 632.275095 1262.53564 1.2101 0.0007651 0.002644 1.6717E-06 1.2127 0.00076677 632.2749958526512 62.914 0.40481 56.739 56.544 56.949 -6.1757 36 20 2 0 0 0 0.0095811 2 40584 40584;40723 81.613 48.827 1 20403000 51477 8882 34766 35561 59875;59876 59875 -0.08512936913120939 QYQQIISRL 9 Unmodified _QYQQIISRL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.824951171875 2 574.824755 1147.63496 0.5939 0.00034139 -0.69206 -0.00039781 -0.098161 -5.6425E-05 574.8243851919738 52.655 0.29182 52.221 52.064 52.356 -0.43367 46 14 4 0 0 0 0.0087923 2 28417 28417;28521 103.42 34.315 1 18318000 51478 2248 34767 35562 59877;59878 59877 0.0670450577167685 QYQQIISRL 9 Unmodified _QYQQIISRL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8237915039062 2 574.824755 1147.63496 0.76539 0.00043996 -1.1233 -0.00064572 -0.35795 -0.00020576 574.8241323213631 52.343 0.25816 52.284 52.168 52.426 -0.058918 21 12 2 0 0 0 0.0089732 1 28328 28328 86.332 26.258 1 6517400 51479 2248 34767 35562 59879 59879 0.0670450577167685 QYQQIISRL 9 Unmodified _QYQQIISRL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MSMS AL20221201_MKP_PDAC_01 4 574.8248901367188 2 574.824755 1147.63496 NaN NaN NaN NaN NaN NaN NaN 57.858 1 51.831 51.331 52.331 -6.0275 0 0 0 0.016921 1 37034 37034 110.67 31.947 1 51480 2248 34767 35562 59880 59880 0.0670450577167685 QYQQRAFGW 9 Unmodified _QYQQRAFGW_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.284423828125 2 592.285797 1182.55704 0.65533 0.00038814 -0.14231 -8.4291E-05 0.51301 0.00030385 592.2852976835553 47.625 0.20164 47.272 47.165 47.367 -0.3526 19 9 3 0 0 0 0.038285 1 25556 25556 50.855 20.218 1 2384800 51481 4828 34768 35563 59881 59881 -0.02693507093727021 QYQQRAFGW 9 Unmodified _QYQQRAFGW_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.2861328125 2 592.285797 1182.55704 0.6706 0.00039719 -0.74471 -0.00044108 -0.074112 -4.3896E-05 592.2853158755479 47.359 0.39478 47.321 47.082 47.477 -0.038643 54 18 4 0 0 0 0.0018186 2 25499 25446;25499 133.7 75.023 1 16781000 51482 4828 34768 35563 59882;59883 59883 -0.02693507093727021 QYQQRAFGW 9 Unmodified _QYQQRAFGW_ 0 0 0 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 ENSG00000136514|ENST00000259030|RTP4 MSMS AL20221201_MKP_PDAC_01 4 592.285400390625 2 592.285797 1182.55704 NaN NaN NaN NaN NaN NaN NaN 52.239 1 46.504 46.004 47.004 -5.7345 0 0 0 5.4397E-05 1 32969 32969 139.54 88.689 1 51483 4828 34768 35563 59884 59884 -0.02693507093727021 QYQREYSEF 9 Unmodified _QYQREYSEF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000589493.1_1_17:40967924-40970674:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.2767333984375 2 625.277835 1248.54112 -0.60237 -0.00037665 -0.051759 -3.2364E-05 -0.65413 -0.00040901 625.2777995605904 32.995 0.25776 32.995 32.851 33.109 0 36 12 3 0 0 0 0.0047067 1 17232 17232 118.07 82.024 1 9030100 51484 3958 34769 35564 59885 59885 -0.07321258121282881 QYQREYSEF 9 Unmodified _QYQREYSEF_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1;ENST00000589493.1_1_17:40967924-40970674:-|nuORF ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2797241210938 2 625.277835 1248.54112 0.81317 0.00050846 -0.31838 -0.00019907 0.49479 0.00030938 625.2776879759538 36.936 0.34148 32.653 32.455 32.796 -4.2835 42 20 3 0 0 0 0.0038489 1 21571 21571 122.18 86.052 1 11332000 51485 3958 34769 35564 59886 59886 -0.07321258121282881 QYQSCCSCMCD 11 Unmodified _QYQSCCSCMCD_ 0 0 0 ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B ENSG00000172538|ENST00000311787|FAM170B MSMS AL20221201_MKP_PDAC_01 4 635.6876831054688 2 635.686912 1269.35927 NaN NaN NaN NaN NaN NaN NaN 25.726 1 22.775 22.275 23.275 -2.9511 0 0 0 0.9435 1 14104 14104 0 0 1 51486 8231 34770 35565 59887 59887 -0.26463464788366764 QYQTEFIL 8 Unmodified _QYQTEFIL_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2677001953125 2 521.266207 1040.51786 0.3976 0.00020725 0.65686 0.0003424 1.0545 0.00054965 521.2670625470022 82.152 0.39094 82.152 81.969 82.36 0 28 18 2 0 0 0 0.75262 1 45580 45580 12.532 0.89125 1 676050 + 51487 19319 34771 35566 59888 59888 -0.0007765216794268781 QYQTEFIL 8 Unmodified _QYQTEFIL_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 521.266207 1040.51786 0.3976 0.00020725 0.65686 0.0003424 1.0545 0.00054965 521.2670625470022 82.152 0.39094 82.152 81.969 82.36 0 -0.014083 0.00072961 NaN 12.532 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 676050 + 51488 19319 34771 35566 -0.0007765216794268781 QYQTEFIL 8 Unmodified _QYQTEFIL_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 521.266207 1040.51786 0.48799 0.00025437 -0.33826 -0.00017632 0.14973 7.8048E-05 521.2662286806836 82.678 0.43983 82.18 82.008 82.448 -0.49751 0.014083 -0.00030783 NaN 12.532 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 692310 + 51489 19319 34771 35566 -0.0007765216794268781 QYQYQHQNR 9 Unmodified _QYQYQHQNR_ 0 0 0 nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.1994323730469 3 422.198771 1263.57448 0.40183 0.00016965 1.3994 0.00059083 1.8013 0.00076049 422.1990422085594 48.099 0.17506 48.061 47.967 48.142 -0.038647 20 8 3 0 0 0 0.49766 1 25950 25950 7.609 0.50723 1 1968200 51490 6950 34772 35567 59889 59889 -0.04676211558739851 QYRIDFEQF 9 Unmodified _QYRIDFEQF_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.2979736328125 2 623.29857 1244.58259 0.26771 0.00016686 0.19786 0.00012333 0.46557 0.00029019 623.2986168435796 64.016 0.19364 64.016 63.953 64.147 0 13 7 2 0 0 0 0.022193 1 35711 35711 61.357 37.337 1 915980 51491 2647 34773 35568 59890 59890 -0.02992077361977863 QYRIDFEQF 9 Unmodified _QYRIDFEQF_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.2978515625 2 623.29857 1244.58259 0.50418 0.00031425 -0.55673 -0.00034701 -0.052555 -3.2757E-05 623.2979278438404 64.616 0.25959 64.131 63.949 64.209 -0.48512 26 11 3 0 0 0 0.028475 1 35232 35232 56.177 25.541 1 2395300 51492 2647 34773 35568 59891 59891 -0.02992077361977863 QYRKEWFL 8 Unmodified _QYRKEWFL_ 0 0 0 REV__ENST00000579860.5_1_17:62504766-62506299:+|nuORF REV__ENST00000579860.5_1_17:62504766-62506299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.3095092773438 2 585.308741 1168.60293 0.10519 6.1569E-05 0.79111 0.00046304 0.8963 0.00052461 585.3091972484683 87.285 0.18803 87.285 87.147 87.335 0 10 9 2 0 0 0 0.80624 1 48331 48331 2.8892 0.58649 1 210340 + 51493 29054 34774 35569 59892 59892 0.025371380885189865 QYRKRDRMA 9 Unmodified _QYRKRDRMA_ 0 0 0 REV__ENST00000482151.1_2:149856814-149868187:+|nuORF REV__ENST00000482151.1_2:149856814-149868187:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.551025390625 3 408.552379 1222.63531 -0.13548 -5.5351E-05 -1.9686 -0.00080429 -2.1041 -0.00085965 408.55144280774465 19.67 0.10507 19.677 19.629 19.734 0.0078506 9 4 3 0 0 0 0.60664 1 10033 10033 0.96228 0.26461 1 314190 + 51494 22298 34775 35570 59893 59893 0.03289602219865628 QYRNFIFY 8 Unmodified _QYRNFIFY_ 0 0 0 ENST00000452284.1_1_22:21356738-21362956:+|nuORF;ENST00000436079.1_1_22:21356738-21363657:+|nuORF;ENST00000429962.1_1_22:21356738-21357321:+|nuORF ENST00000452284.1_1_22:21356738-21362956:+|nuORF ENST00000452284.1_1_22:21356738-21362956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2872924804688 2 575.787641 1149.56073 0.2285 0.00013157 -2.8151 -0.0016209 -2.5866 -0.0014893 575.7857961474682 31.582 0.27621 31.582 31.463 31.739 0 19 13 2 0 0 0 0.71527 1 16489 16489 14.582 1.0738 1 1349300 51495 13228 34776 35571 59894 59894 -0.00806837319873921 QYRREREHE 9 Unmodified _QYRREREHE_ 0 0 0 ENST00000481998.1_1_6:31513879-31514336:-|nuORF;nc|ENSG00000213760|O95670-3|ATP6V1G2;ENSG00000213760|ENST00000303892|ATP6V1G2;ENST00000475917.1_1_6:31510065-31514336:-|nuORF ENST00000481998.1_1_6:31513879-31514336:-|nuORF ENST00000481998.1_1_6:31513879-31514336:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.882568359375 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 95.214 1 95.214 94.714 95.714 0 0 0 0 0.85798 1 52632 52632 0.23584 0 1 51496 10456 34777 35572 59895 59895 -0.01625137638666274 QYRREREHE 9 Unmodified _QYRREREHE_ 0 0 0 ENST00000481998.1_1_6:31513879-31514336:-|nuORF;nc|ENSG00000213760|O95670-3|ATP6V1G2;ENSG00000213760|ENST00000303892|ATP6V1G2;ENST00000475917.1_1_6:31510065-31514336:-|nuORF ENST00000481998.1_1_6:31513879-31514336:-|nuORF ENST00000481998.1_1_6:31513879-31514336:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821105957031 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 95.501 1 95.501 95.001 96.001 0 0 0 0 0.85798 1 52786 52786 0.23584 0 1 51497 10456 34777 35572 59896 59896 -0.01625137638666274 QYRVEHLTTF 10 Unmodified _QYRVEHLTTF_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MSMS AL20221201_MKP_PDAC_01 4 431.7203063964844 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 1.5574 1 -0.92456 -1.4246 -0.42456 -2.482 0 0 0 0.98914 1 806 806 0.77653 0.078866 1 51498 6120 34778 35573 59897 59897 0.016715869377321724 QYSDINNRW 9 Unmodified _QYSDINNRW_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2778930664062 2 598.278169 1194.54179 0.25916 0.00015505 -0.8947 -0.00053528 -0.63554 -0.00038023 598.2775415487072 36.211 0.25565 36.211 36.074 36.33 0 39 12 4 0 0 0 0.0085164 1 19157 19157 99.799 65.397 1 36890000 51499 8374 34779 35574 59898 59898 -0.04770418681573574 QYSDINNRW 9 Unmodified _QYSDINNRW_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2775268554688 2 598.278169 1194.54179 NaN NaN NaN NaN NaN NaN NaN 36.337 1 36.337 35.837 36.837 0 0 0 0 0.70001 1 19267 19267 9.3831 2.66 1 51500 8374 34779 35574 59899 59899 -0.04770418681573574 QYSDINNRW 9 Unmodified _QYSDINNRW_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2779541015625 2 598.278169 1194.54179 -0.39831 -0.0002383 -0.22455 -0.00013434 -0.62286 -0.00037264 598.2781659509095 36.519 0.22652 36.27 36.132 36.358 -0.2497 22 10 3 0 0 0 0.010611 1 19148 19148 78.728 51.099 1 4256000 51501 8374 34779 35574 59900 59900 -0.04770418681573574 QYSDINNRW 9 Unmodified _QYSDINNRW_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2761840820312 2 598.278169 1194.54179 0.45789 0.00027394 0.044801 2.6804E-05 0.50269 0.00030075 598.2781341733896 40.749 0.49695 36.22 35.952 36.449 -4.5294 96 30 4 0 0 0 0.0036082 2 24254 24254;24387 123.45 77.751 1 132770000 51502 8374 34779 35574 59901;59902 59901 -0.04770418681573574 QYSEDLEEMN 10 Unmodified _QYSEDLEEMN_ 0 0 0 REV__ENSG00000168078|ENST00000301905|PBK REV__ENSG00000168078|ENST00000301905|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.8366088867188 3 419.836176 1256.4867 -0.46046 -0.00019332 0.87312 0.00036657 0.41266 0.00017325 419.83687091576627 40.857 0.64573 40.857 40.659 41.304 0 380 51 9 0 0 0 0.71276 1 22135 22135 0.62683 0.17231 1 304700000 + 51503 22287 34780 35575 59903 59903 -0.13128638055013653 QYSEMQLAT 9 Unmodified _QYSEMQLAT_ 0 0 0 REV__nc|ENSG00000171502|Q17RW2-2|COL24A1 REV__nc|ENSG00000171502|Q17RW2-2|COL24A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8660583496094 3 357.498947 1069.47501 0.83607 0.00029889 0.49663 0.00017754 1.3327 0.00047644 357.4991037446137 42.765 0.34223 42.765 42.586 42.928 0 47 17 3 0 0 0 0.21302 1 23144 23144 3.5871 0 1 16554000 + 51504 22569 34781 35576 59904 59904 -0.05694790287680007 QYSIISNVF 9 Unmodified _QYSIISNVF_ 0 0 0 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7796020507812 2 535.779482 1069.54441 0.55654 0.00029818 1.5161 0.0008123 2.0726 0.0011105 535.7800300874416 82.336 0.42609 81.84 81.629 82.055 -0.4952 47 17 4 0 0 0 0.008678 1 45036 45036 88.904 56.598 1 6558700 51505 6909 34782 35577 59905 59905 0.0124203672337444 QYSIISNVF 9 Unmodified _QYSIISNVF_ 0 0 0 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7813720703125 2 535.779482 1069.54441 1.8074 0.00096835 1.5991 0.00085677 3.4065 0.0018251 535.7802805569726 81.744 0.31623 81.804 81.636 81.952 0.059929 26 12 3 0 0 0 0.019303 1 45180 45180 64.236 37.353 1 2833100 51506 6909 34782 35577 59906 59906 0.0124203672337444 QYSIISNVF 9 Unmodified _QYSIISNVF_ 0 0 0 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1 FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant FLVCR1|p.S462Yfs*7|1|0.2|ENSG00000162769|chr1:212888560-212888561|-/TACT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7796020507812 2 535.779482 1069.54441 0.71276 0.00038188 1.5371 0.00082355 2.2499 0.0012054 535.7803292192622 90.204 0.51389 84.028 83.826 84.34 -6.1757 61 29 3 0 0 0 0.015445 1 59550 59550 68.081 32.037 1 24545000 51507 6909 34782 35577 59907 59907 0.0124203672337444 QYSKQVIF 8 Unmodified _QYSKQVIF_ 0 0 0 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7758178710938 2 506.776742 1011.53893 NaN NaN NaN NaN NaN NaN NaN 76.106 1 75.627 75.127 76.127 -0.47945 0 0 0 0.97444 1 41664 41664 2.5775 0 1 + 51508 23668 34783 35578 59908 59908 0.033623579315758434 QYSNAFDVF 9 Unmodified _QYSNAFDVF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7454833984375 2 545.745639 1089.47673 0.4706 0.00025683 -0.29629 -0.0001617 0.1743 9.5125E-05 545.7453804213347 74.485 0.6155 74.485 74.21 74.825 0 82 27 4 0 0 0 0.00856 2 41462 41368;41462 100.37 74.972 1 27029000 51509 5307 34784 35579 59909;59910 59910 -0.06443413207443882 QYSNAFDVF 9 Unmodified _QYSNAFDVF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7456665039062 2 545.745639 1089.47673 0.5475 0.0002988 -0.17629 -9.6209E-05 0.37121 0.00020259 545.7455313659517 74.998 0.68877 74.521 74.256 74.945 -0.47713 86 31 3 0 0 0 0.008678 2 41066 40961;41066 88.904 69.647 1 41715000 51510 5307 34784 35579 59911;59912 59912 -0.06443413207443882 QYSNAFDVF 9 Unmodified _QYSNAFDVF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7456665039062 2 545.745639 1089.47673 0.28725 0.00015676 1.3851 0.00075591 1.6723 0.00091267 545.7464249709641 74.423 0.29367 74.469 74.302 74.595 0.045959 31 12 3 0 0 0 0.015445 1 41004 41004 68.081 47.627 1 4721000 51511 5307 34784 35579 59913 59913 -0.06443413207443882 QYSNAFDVF 9 Unmodified _QYSNAFDVF_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7460327148438 2 545.745639 1089.47673 0.35702 0.00019484 0.19065 0.00010405 0.54767 0.00029889 545.7456470869166 82.32 0.94839 76.144 75.712 76.661 -6.1757 142 53 3 0 0 0 0.0055767 4 53970 53844;53970;54089;54213 115.69 95.238 1 167990000 51512 5307 34784 35579 59914;59915;59916;59917 59915 -0.06443413207443882 QYSNDIMQRG 10 Oxidation (M) _QYSNDIM(Oxidation (M))QRG_ QYSNDIM(1)QRG QYSNDIM(48)QRG 0 0 1 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2733154296875 2 614.274769 1226.53499 0.82437 0.00050639 -1.4278 -0.00087704 -0.6034 -0.00037065 614.2740789860139 34.82 0.30489 30.725 30.533 30.838 -4.0951 35 17 3 0 0 0 0.095098 1 20073 20073 47.749 7.799 1 8611400 + 51513 17364 34785 35580 59918 59918 1827 -0.06922099624466682 QYSNDIMQRG 10 Oxidation (M) _QYSNDIM(Oxidation (M))QRG_ 0 0 1 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 614.274769 1226.53499 -0.22414 -0.00013768 -3.1308 -0.0019232 -3.3549 -0.0020609 614.273018437008 30.758 0.73208 30.758 30.16 30.892 0 0.045978 -0.00051407 NaN 47.749 91 35 5 NaN NaN NaN NaN 0 NaN NaN 0 30320000 + 51514 17364 34785 35580 1827 -0.06922099624466682 QYSNDIMQRG 10 Oxidation (M) _QYSNDIM(Oxidation (M))QRG_ 0 0 1 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 614.274769 1226.53499 0.57058 0.00035049 -2.4608 -0.0015116 -1.8902 -0.0011611 614.2733957970474 30.757 0.19395 30.654 30.523 30.717 -0.10269 -0.058441 0.00030905 NaN 47.749 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2027000 + 51515 17364 34785 35580 1827 -0.06922099624466682 QYSNDIMQRG 10 Oxidation (M) _QYSNDIM(Oxidation (M))QRG_ 0 0 1 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 REV__nc|ENSG00000064886|Q15782-5|CHI3L2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 614.274769 1226.53499 0.82437 0.00050639 -1.4278 -0.00087704 -0.6034 -0.00037065 614.2740789860139 34.82 0.30489 30.725 30.533 30.838 -4.0951 0.012462 0.0015782 NaN 47.749 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 8611400 + 51516 17364 34785 35580 1827 -0.06922099624466682 QYSNNIRQLL 10 Unmodified _QYSNNIRQLL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.8382568359375 2 624.838394 1247.66223 0.23158 0.0001447 -0.18161 -0.00011348 0.049972 3.1224E-05 624.8380811106417 53.001 0.18701 52.55 52.476 52.663 -0.45173 19 9 3 0 0 0 0.067957 1 28669 28669 53.833 33.379 1 1956900 51517 4284 34786 35581 59919 59919 0.04830989312040401 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2718505859375 2 505.271293 1008.52803 0.45981 0.00023233 -0.24526 -0.00012392 0.21455 0.00010841 505.271387303687 87.833 0.33693 87.833 87.616 87.953 0 32 15 3 0 0 0 0.34999 1 48588 48588 14.838 3.198 1 1052200 51518 1340 34787 35582 59920 59920 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2713012695312 2 505.271293 1008.52803 0.044739 2.2605E-05 0.25695 0.00012983 0.30169 0.00015243 505.271398781425 88.302 0.58402 87.798 87.507 88.091 -0.50423 96 25 5 0 0 0 0.0082661 3 48289 48186;48289;48389 92.491 46.47 1 41656000 51519 1340 34787 35582 59921;59922;59923 59922 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2716064453125 2 505.271293 1008.52803 0.061435 3.1041E-05 0.34963 0.00017666 0.41107 0.0002077 505.27153154464014 87.679 0.36464 87.732 87.586 87.95 0.053352 22 15 2 0 0 0 0.0026776 2 48732 48732;48861 128.37 53.943 1 26325000 51520 1340 34787 35582 59924;59925 59924 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2716064453125 2 505.271293 1008.52803 1.2207 0.0006168 0.27188 0.00013737 1.4926 0.00075417 505.27119994971207 96.327 1.2178 90.152 89.569 90.787 -6.1757 235 73 4 0 0 0 0.0055767 7 63865 63485;63604;63738;63865;63990;64112;64243 115.69 51.456 1 113810000 51521 1340 34787 35582 59926;59927;59928;59929;59930;59931;59932 59929 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1009.539245605469 1 1009.53531 1008.52803 1.0693 0.0010795 0.33109 0.00033425 1.4004 0.0014138 1009.5348579691841 96.331 0.96048 90.156 89.678 90.638 -6.1757 123 57 3 0 0 0 0.00012323 1 64110 64110 152.41 67.055 1 29709000 51522 1340 34787 35582 59933 59933 0.024109555572863428 QYSPLLAAF 9 Unmodified _QYSPLLAAF_ 0 0 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1 ENSG00000082153|ENST00000409600|BZW1 ENSG00000082153|ENST00000409600|BZW1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.271293 1008.52803 0.45981 0.00023233 -0.24526 -0.00012392 0.21455 0.00010841 505.271387303687 87.833 0.33693 87.833 87.616 87.953 0 0.04545 -0.00038653 NaN 128.37 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1052200 51523 1340 34787 35582 0.024109555572863428 QYSQDYQQF 9 Unmodified _QYSQDYQQF_ 0 0 0 ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5;ENST00000441812.6_1_3:50144918-50150831:+|nuORF;ENST00000494360.5_1_3:50144211-50147205:+|nuORF ENST00000489437.1_1_3:50144918-50148299:+|nuORF ENST00000489437.1_1_3:50144918-50148299:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2763061523438 2 603.756735 1205.49892 0.11655 7.0367E-05 -0.31057 -0.00018751 -0.19402 -0.00011714 603.7573472394807 39.098 0.20637 39.098 38.97 39.177 0 13 9 2 0 0 0 0.21564 1 20930 20930 3.9444 1.3669 1 907290 51524 271 34788 35583 59934 59934 -0.09561233529689162 QYSRAHNCDF 10 Unmodified _QYSRAHNCDF_ 0 0 0 REV__ENSG00000203837|ENST00000369230|PNLIPRP3 REV__ENSG00000203837|ENST00000369230|PNLIPRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.1777954101562 3 414.176978 1239.5091 0.58102 0.00024064 -0.37305 -0.00015451 0.20797 8.6135E-05 414.17759899238587 82.678 0.25432 82.18 82.077 82.331 -0.49751 22 10 3 0 0 0 0.7191 1 45265 45265 0.77653 0 1 851800 + 51525 24122 34789 35584 59935 59935 -0.10106949076089222 QYSRFSLENNF 11 Unmodified _QYSRFSLENNF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 702.8297119140625 2 702.830766 1403.64698 0.024035 1.6893E-05 0.071871 5.0513E-05 0.095906 6.7406E-05 702.8307129121818 54.832 0.29869 54.365 54.222 54.52 -0.46664 42 14 4 0 0 0 1.3203E-08 1 29701 29701 107.1 76.463 1 23808000 51526 3121 34790 35585 59936 59936 -0.03869922275771387 QYSRFSLENNF 11 Unmodified _QYSRFSLENNF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 702.8300170898438 2 702.830766 1403.64698 0.31818 0.00022363 -0.25016 -0.00017582 0.068018 4.7805E-05 703.3317342029443 54.563 0.16193 54.496 54.38 54.542 -0.066936 10 7 2 0 0 0 0.012228 1 29629 29629 65.474 41.453 1 3507100 51527 3121 34790 35585 59937 59937 -0.03869922275771387 QYSRFSLENNF 11 Unmodified _QYSRFSLENNF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 702.8311157226562 2 702.830766 1403.64698 0.68244 0.00047964 0.12298 8.6433E-05 0.80542 0.00056607 703.3325471000626 60.483 0.43316 54.335 54.161 54.594 -6.1478 55 22 3 0 0 0 5.4079E-44 2 39003 38879;39003 190.03 157.73 1 63813000 51528 3121 34790 35585 59938;59939 59939 -0.03869922275771387 QYSRFSLENNF 11 Unmodified _QYSRFSLENNF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 702.830766 1403.64698 0.60074 0.00042222 0.24299 0.00017078 0.84373 0.000593 702.830913706034 54.273 0.15651 54.273 54.173 54.33 0 -0.093891 0.0002376 NaN 190.03 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 889370 51529 3121 34790 35585 -0.03869922275771387 QYSTRIRKTL 10 Unmodified _QYSTRIRKTL_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.58349609375 3 422.582333 1264.72517 2.3353 0.00098685 -0.26233 -0.00011085 2.073 0.00087599 422.5820904108845 100.04 0.32712 100 99.747 100.07 -0.036301 31 11 4 0 0 0 0.70895 1 55516 55516 1.9064 0 1 6929700 + 51530 29680 34791 35586 59940 59940 0.1033955510006308 QYSTRIRKTL 10 Unmodified _QYSTRIRKTL_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 422.582333 1264.72517 2.3353 0.00098685 -0.26233 -0.00011085 2.073 0.00087599 422.5820904108845 100.04 0.32712 100 99.747 100.07 -0.036301 0 0 NaN 1.9064 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6929700 + 51531 29680 34791 35586 0.1033955510006308 QYSTYTELCR 10 Unmodified _QYSTYTELCR_ 0 0 0 nc|ENSG00000154511|Q5T7M9-2|DIPK1A;ENSG00000154511|ENST00000370310|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.2897338867188 2 632.287345 1262.56014 2.1777 0.0013769 1.3342 0.00084357 3.5119 0.0022205 632.2881983561473 95.437 0.49504 95.442 95.184 95.679 0.004158 57 18 4 0 0 0 0.52888 1 52961 52961 14.838 5.4551 1 18231000 51532 6330 34792 35587 59941 59941 -0.06064044821891912 QYSTYTELCR 10 Unmodified _QYSTYTELCR_ 0 0 0 nc|ENSG00000154511|Q5T7M9-2|DIPK1A;ENSG00000154511|ENST00000370310|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 632.287345 1262.56014 0.073086 4.6211E-05 1.0715 0.0006775 1.1446 0.00072371 632.2880174842705 95.801 0.32301 95.433 95.273 95.596 -0.36815 -0.0043203 -0.00018747 NaN 14.838 46 19 3 NaN NaN NaN NaN 0 NaN NaN 0 825250 51533 6330 34792 35587 -0.06064044821891912 QYSYALFKAMS 11 Unmodified _QYSYALFKAMS_ 0 0 0 ENSG00000138622|ENST00000261917|HCN4;ENSG00000164588|ENST00000303230|HCN1 ENSG00000138622|ENST00000261917|HCN4;ENSG00000164588|ENST00000303230|HCN1 ENSG00000164588|ENST00000303230|HCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8799438476562 3 436.88128 1307.62201 0.23208 0.00010139 -2.3833 -0.0010412 -2.1512 -0.00093984 436.87938221958865 102.34 0.45583 102.34 101.92 102.38 0 39 20 2 0 0 0 0.73992 1 56376 56376 0.50596 0.09769 1 392240 51534 5072;7209 34793 35588 59942 59942 -0.019496934027529278 QYSYIDFKF 9 Unmodified _QYSYIDFKF_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.793212890625 2 605.792589 1209.57063 0.68171 0.00041297 0.75858 0.00045954 1.4403 0.00087251 605.7927721583675 74.194 0.24663 73.719 73.57 73.817 -0.47588 20 9 3 0 0 0 0.2289 1 40608 40608 27.629 18.246 1 770290 51535 441 34794 35589 59943 59943 -0.02577694105161754 QYSYIDFKF 9 Unmodified _QYSYIDFKF_ 0 0 0 ENSG00000011275|ENST00000389902|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;nc|ENSG00000011275|Q9NWF9-3|RNF216 ENSG00000011275|ENST00000389902|RNF216 ENSG00000011275|ENST00000389902|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.7929077148438 2 605.792589 1209.57063 0.2878 0.00017435 -0.42885 -0.0002598 -0.14105 -8.5447E-05 605.7921978085009 73.699 0.25214 73.743 73.612 73.864 0.043983 23 11 3 0 0 0 0.047194 1 40610 40610 49.554 30.192 1 3240000 51536 441 34794 35589 59944 59944 -0.02577694105161754 QYTDLLRLF 9 Unmodified _QYTDLLRLF_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.82177734375 2 584.821681 1167.62881 0.31114 0.00018196 0.37788 0.00022099 0.68902 0.00040295 584.8217540896736 92.482 0.20477 92.001 91.88 92.085 -0.48092 17 9 2 0 0 0 0.46501 1 50528 50528 9.3831 7.3234 1 686020 51537 10449 34795 35590 59945 59945 0.05169987540125476 QYTDLLRLF 9 Unmodified _QYTDLLRLF_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8230590820312 2 584.821681 1167.62881 1.5858 0.00092742 -0.50576 -0.00029578 1.08 0.00063164 584.8212713449524 91.926 0.38948 91.956 91.745 92.135 0.030197 32 13 3 0 0 0 0.0090948 2 51091 51091;51188 85.272 57.643 1 17537000 51538 10449 34795 35590 59946;59947 59946 0.05169987540125476 QYTDLLRLF 9 Unmodified _QYTDLLRLF_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8211059570312 2 584.821681 1167.62881 0.53578 0.00031334 -0.78116 -0.00045684 -0.24538 -0.0001435 584.8208649296 99.614 0.13574 93.439 93.354 93.49 -6.1757 17 8 3 0 0 0 0.0085164 1 66382 66382 99.799 69.574 1 131140000 51539 10449 34795 35590 59948 59948 0.05169987540125476 QYTDQSEELY 10 Unmodified _QYTDQSEELY_ 0 0 0 REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.2725219726562 2 638.272415 1274.53028 -0.028509 -1.8196E-05 0.08775 5.6009E-05 0.059242 3.7812E-05 638.272506604294 52.5 0.32482 52.5 52.332 52.657 0 45 14 4 0 0 0 0.47869 1 29021 29021 20.454 10.38 1 15919000 + 51540 26246 34796 35591 59949 59949 -0.09600705286220546 QYTDQSEELY 10 Unmodified _QYTDQSEELY_ 0 0 0 REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.7738647460938 2 638.272415 1274.53028 -0.028509 -1.8196E-05 0.08775 5.6009E-05 0.059242 3.7812E-05 638.272506604294 52.5 0.32482 52.5 52.332 52.657 0 45 14 4 0 0 0 0.23566 1 29140 29140 7.2892 3.3448 1 15919000 + 51541 26246 34796 35591 59950 59950 -0.09600705286220546 QYTDQSEELY 10 Unmodified _QYTDQSEELY_ 0 0 0 REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 638.272415 1274.53028 0.083758 5.346E-05 0.91574 0.00058449 0.99949 0.00063795 638.2728341541467 53.115 0.22723 52.664 52.515 52.742 -0.45173 0.081836 0.0007946 NaN 20.454 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2066500 + 51542 26246 34796 35591 -0.09600705286220546 QYTFVGDIF 9 Unmodified _QYTFVGDIF_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2669677734375 2 545.266207 1088.51786 0.24556 0.00013389 0.64652 0.00035253 0.89208 0.00048642 545.266459198264 89.78 0.44794 89.279 88.98 89.428 -0.50171 46 20 3 0 0 0 0.047196 1 49055 49055 46.021 35.197 1 2085400 51543 2083 34797 35592 59951 59951 -0.02285652167961416 QYTGGIAKL 9 Unmodified _QYTGGIAKL_ 0 0 0 ENST00000462616.1_1_9:139311477-139313651:+|nuORF;nc|ENSG00000165688|Q10713-2|PMPCA;ENSG00000165688|ENST00000371717|PMPCA ENST00000462616.1_1_9:139311477-139313651:+|nuORF;ENSG00000165688|ENST00000371717|PMPCA ENSG00000165688|ENST00000371717|PMPCA MSMS AL20221201_MKP_PDAC_01 4 475.7690124511719 2 475.768917 949.523281 NaN NaN NaN NaN NaN NaN NaN 43.185 1 38.42 37.92 38.92 -4.7648 0 0 0 0.18351 1 26199 26199 32.786 8.1118 1 51544 13682;7375 34798 35593 59952 59952 0.04650071414528156 QYTHKIYHL 9 Unmodified _QYTHKIYHL_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.5488586425781 3 401.548741 1201.62439 -0.36344 -0.00014594 0.56472 0.00022676 0.20128 8.0824E-05 401.5489388325453 23.369 0.26731 23.369 23.222 23.489 0 22 12 2 0 0 0 0.30562 1 11874 11874 16.149 10.366 1 9462300 51545 8405 34799 35594 59953 59953 0.031645231171978594 QYTHKIYHL 9 Unmodified _QYTHKIYHL_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5488891601562 3 401.548741 1201.62439 0.025617 1.0286E-05 -0.87816 -0.00035262 -0.85255 -0.00034234 401.54841988992877 23.45 0.28344 23.462 23.33 23.614 0.012396 29 12 3 0 0 0 0.070838 1 11927 11927 29.841 18.209 1 32127000 51546 8405 34799 35594 59954 59954 0.031645231171978594 QYTHKIYHL 9 Unmodified _QYTHKIYHL_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.54833984375 3 401.548741 1201.62439 -0.01371 -5.5051E-06 -0.43785 -0.00017582 -0.45156 -0.00018132 401.5484214848494 23.267 0.19072 23.285 23.202 23.393 0.01749 15 8 2 0 0 0 0.1773 1 11983 11983 23.79 18.006 1 19120000 51547 8405 34799 35594 59955 59955 0.031645231171978594 QYTHKIYHL 9 Unmodified _QYTHKIYHL_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5483703613281 3 401.548741 1201.62439 0.16877 6.7767E-05 -0.25417 -0.00010206 -0.085406 -3.4295E-05 401.54873609635246 26.001 1.0771 23.05 22.804 23.881 -2.9511 170 62 6 0 0 0 0.10734 3 14163 14163;14276;14398 23.79 16.313 1 395920000 51548 8405 34799 35594 59956;59957;59958 59956 0.031645231171978594 QYTHKIYHL 9 Unmodified _QYTHKIYHL_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.8193359375 2 601.819473 1201.62439 -0.58964 -0.00035486 0.15289 9.201E-05 -0.43676 -0.00026285 601.8195750805604 25.992 0.33385 23.04 22.88 23.214 -2.9511 49 21 3 0 0 0 0.00035873 2 14308 14196;14308 147.06 104.96 1 26431000 51549 8405 34799 35594 59959;59960 59960 0.031645231171978594 QYTPDAQRF 9 Unmodified _QYTPDAQRF_ 0 0 0 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 nc|ENSG00000169129|Q8N4X5-2|AFAP1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2698364257812 2 563.269813 1124.52507 -0.083005 -4.6754E-05 1.7774 0.0010012 1.6944 0.0009544 563.2708044097354 31.76 0.19857 31.76 31.661 31.86 0 22 9 3 0 0 0 0.047194 1 16537 16537 49.554 24.155 1 3172000 51550 7837 34800 35595 59961 59961 -0.03220919567525016 QYTPHSHQF 9 Unmodified _QYTPHSHQF_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5122375488281 3 382.177195 1143.50976 -0.548 -0.00020943 0.48061 0.00018368 -0.067386 -2.5753E-05 382.17738598485647 18.963 0.1227 18.986 18.913 19.035 0.023106 21 7 4 0 0 0 0.21589 1 9529 9529 21.59 16.693 1 2987100 51551 5353 34801 35596 59962 59962 -0.05625786364726082 QYTPHSHQF 9 Unmodified _QYTPHSHQF_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1776428222656 3 382.177195 1143.50976 1.5972 0.00061043 -0.42874 -0.00016386 1.1685 0.00044657 382.1769104436718 20.675 0.38691 17.982 17.762 18.148 -2.693 77 24 4 0 0 0 0.053952 2 11071 10962;11071 43.982 28.733 1 26709000 51552 5353 34801 35596 59963;59964 59964 -0.05625786364726082 QYTPHSHQF 9 Unmodified _QYTPHSHQF_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2642822265625 2 572.762155 1143.50976 1.2465 0.00071394 -0.69651 -0.00039893 0.54997 0.000315 572.7618541777078 20.628 0.27597 17.936 17.82 18.096 -2.693 28 17 2 0 0 0 0.058763 1 10981 10981 53.404 31.657 1 2388500 51553 5353 34801 35596 59965 59965 -0.05625786364726082 QYTPHSHQF 9 Unmodified _QYTPHSHQF_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 382.177195 1143.50976 -0.51639 -0.00019735 0.37364 0.0001428 -0.14275 -5.4556E-05 382.17727245416665 19.078 0.17714 19.078 18.983 19.16 0 0.04595 -5.2281E-05 NaN 21.59 34 11 4 NaN NaN NaN NaN 0 NaN NaN 0 8830600 51554 5353 34801 35596 -0.05625786364726082 QYTQALEKF 9 Unmodified _QYTQALEKF_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2902221679688 2 564.290214 1126.56587 0.1182 6.6696E-05 0.030882 1.7426E-05 0.14908 8.4123E-05 564.2902057760084 44.064 0.34964 44.064 43.896 44.246 0 60 19 4 0 0 0 0.0074582 2 24009 23908;24009 110.55 68.713 1 374220000 51555 6139 34802 35597 59966;59967 59967 0.007654217520666862 QYTQALEKF 9 Unmodified _QYTQALEKF_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2913818359375 2 564.290214 1126.56587 0.02227 1.2567E-05 0.47455 0.00026778 0.49682 0.00028035 564.2902953155756 44.305 0.19997 43.989 43.887 44.087 -0.31585 21 14 2 0 0 0 0.0014462 1 23615 23615 136.39 94.552 1 68396000 51556 6139 34802 35597 59968 59968 0.007654217520666862 QYTQALEKF 9 Unmodified _QYTQALEKF_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2904052734375 2 564.290214 1126.56587 1.3536 0.0007638 -0.82408 -0.00046502 0.52948 0.00029878 564.2896516822708 49.504 0.54002 44.108 43.839 44.379 -5.3961 112 33 4 0 0 0 0.0085366 3 30914 30791;30914;31048 90.135 55.733 1 828360000 51557 6139 34802 35597 59969;59970;59971 59970 0.007654217520666862 QYTTLYKV 8 Unmodified _QYTTLYKV_ 0 0 0 REV__ENSG00000165943|ENST00000298894|MOAP1 REV__ENSG00000165943|ENST00000298894|MOAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2758178710938 2 508.276575 1014.5386 NaN NaN NaN NaN NaN NaN NaN 94.587 1 94.167 93.667 94.667 -0.42044 0 0 0 0.97444 1 51675 51675 0.69038 0 1 + 51558 22066 34803 35598 59972 59972 0.03190938211696448 QYTVFHSLI 9 Unmodified _QYTVFHSLI_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2959594726562 2 554.295299 1106.57605 NaN NaN NaN NaN NaN NaN NaN 67.376 1 66.894 66.394 67.394 -0.48218 0 0 0 0.46757 1 36807 36807 16.942 2.104 1 51559 8786 34804 35599 59973 59973 0.027020294773365094 QYTVFHSLI 9 Unmodified _QYTVFHSLI_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.2962036132812 2 554.295299 1106.57605 NaN NaN NaN NaN NaN NaN NaN 66.821 1 66.839 66.339 67.339 0.018028 0 0 0 0.060495 1 36666 36666 53.576 23.351 1 51560 8786 34804 35599 59974 59974 0.027020294773365094 QYVDFHNQL 9 Unmodified _QYVDFHNQL_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2779541015625 2 582.277638 1162.54072 0.57663 0.00033576 0.15 8.7342E-05 0.72663 0.0004231 582.2773067342861 45.938 0.42647 45.938 45.722 46.149 0 60 20 4 0 0 0 0.0082485 1 25122 25122 96.285 65.648 1 65999000 51561 4650 34805 35600 59975 59975 -0.03404633050490702 QYVDFHNQL 9 Unmodified _QYVDFHNQL_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2778930664062 2 582.277638 1162.54072 0.41588 0.00024216 -0.20184 -0.00011753 0.21404 0.00012463 582.277401027298 46.294 0.27258 45.957 45.8 46.073 -0.33664 39 13 4 0 0 0 0.25681 1 24835 24835 19.257 7.0163 1 32294000 51562 4650 34805 35600 59976 59976 -0.03404633050490702 QYVDFHNQL 9 Unmodified _QYVDFHNQL_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2780151367188 2 582.277638 1162.54072 0.63102 0.00036743 -0.36028 -0.00020978 0.27075 0.00015765 582.2773728731269 52.292 0.55211 46.558 46.248 46.8 -5.7345 71 33 3 0 0 0 0.0082661 2 33064 32940;33064 92.491 81.89 1 182180000 51563 4650 34805 35600 59977;59978 59978 -0.03404633050490702 QYVDSQWSL 9 Unmodified _QYVDSQWSL_ 0 0 0 nc|ENSG00000196998|Q9Y484-2|WDR45;ENST00000433252.7_1_X:48932732-48932966:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45 nc|ENSG00000196998|Q9Y484-2|WDR45 nc|ENSG00000196998|Q9Y484-2|WDR45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2645263671875 2 563.264196 1124.51384 0.33754 0.00019012 0.43507 0.00024506 0.77261 0.00043518 563.2643847067276 63.438 0.25159 63.438 63.315 63.567 0 30 14 3 0 0 0 0.076472 1 35389 35389 49.933 49.933 1 5049700 51564 16481 34806 35601 59979 59979 -0.04343741661659806 QYVEKLEKI 9 Unmodified _QYVEKLEKI_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.888427734375 3 383.888651 1148.64412 -0.60337 -0.00023163 0.4802 0.00018434 -0.12318 -4.7286E-05 383.88872576933 34.713 0.23085 34.713 34.597 34.827 0 33 11 4 0 0 0 0.08907 1 18306 18306 35.612 11.811 1 11424000 51565 3033;3790 34807 35602 59980 59980 0.07574854337326542 QYVEKLEKI 9 Unmodified _QYVEKLEKI_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3284912109375 2 575.329339 1148.64412 -0.26427 -0.00015204 -0.41935 -0.00024126 -0.68362 -0.0003933 575.3289063000814 34.724 0.15721 34.724 34.636 34.793 0 13 7 2 0 0 0 0.14859 1 18321 18321 29.841 11.694 1 2724700 51566 3033;3790 34807 35602 59981 59981 0.07574854337326542 QYVEKLEKI 9 Unmodified _QYVEKLEKI_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8894958496094 3 383.888651 1148.64412 1.2893 0.00049495 2.5815 0.00099103 3.8708 0.001486 383.88857701867335 39.31 0.54256 34.859 34.632 35.175 -4.4509 70 33 3 0 0 0 0.331 1 23263 23263 15.739 3.5639 1 17931000 51567 3033;3790 34807 35602 59982 59982 0.07574854337326542 QYVHCLFLW 9 Carbamidomethyl (C) _QYVHC(Carbamidomethyl (C))LFLW_ QYVHC(1)LFLW QYVHC(97)LFLW 0 1 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3128051757812 2 633.310426 1264.6063 0.36804 0.00023308 0.039699 2.5142E-05 0.40774 0.00025823 633.3105043193283 98.675 0.16126 92.499 92.389 92.551 -6.1757 37 11 4 0 0 0 0.0083087 1 65439 65439 97.075 62.673 1 313530000 51568 9710 34808 35603 59983 59983 889 -0.015419351291484418 QYVKELYE 8 Unmodified _QYVKELYE_ 0 0 0 nc|ENSG00000141179|Q9UKL6-2|PCTP;ENSG00000141179|ENST00000268896|PCTP nc|ENSG00000141179|Q9UKL6-2|PCTP nc|ENSG00000141179|Q9UKL6-2|PCTP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1073.512084960938 1 1071.5357 1070.52843 -0.21082 -0.0002259 1.0549 0.0011304 0.84411 0.00090449 1071.536448293558 78.611 0.29393 78.125 77.971 78.265 -0.48596 26 11 3 0 0 0 0.80232 1 43025 43025 5.2307 0.90143 1 3129000 51569 5304 34809 35604 59984 59984 -0.004016695135305781 QYVKELYE 8 Unmodified _QYVKELYE_ 0 0 0 nc|ENSG00000141179|Q9UKL6-2|PCTP;ENSG00000141179|ENST00000268896|PCTP nc|ENSG00000141179|Q9UKL6-2|PCTP nc|ENSG00000141179|Q9UKL6-2|PCTP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1071.5357 1070.52843 -0.42688 -0.00045742 1.3898 0.0014893 0.96295 0.0010318 1071.5373972135649 78.07 0.26032 78.07 77.984 78.244 0 -0.027837 0.00032466 NaN 5.2307 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1150800 51570 5304 34809 35604 -0.004016695135305781 QYVKVLLGL 9 Unmodified _QYVKVLLGL_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.328369140625 2 516.826235 1031.63792 0.14595 7.5428E-05 1.5158 0.00078343 1.6618 0.00085886 516.8269776792828 72.517 0.3022 72.558 72.378 72.68 0.041725 32 13 3 0 0 0 0.038285 1 39893 39893 50.855 25.456 1 7403300 51571 3479 34810 35605 59985 59985 0.12336380896454102 QYVKVLLGL 9 Unmodified _QYVKVLLGL_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8253173828125 2 516.826235 1031.63792 1.0798 0.00055807 -0.82124 -0.00042444 0.25855 0.00013363 516.8257092014029 94.669 0.54379 88.493 88.204 88.748 -6.1757 47 31 2 0 0 0 0.038285 2 62661 62661;62807 50.855 5.137 1 7446700 51572 3479 34810 35605 59986;59987 59986 0.12336380896454102 QYVLFDWFL 9 Unmodified _QYVLFDWFL_ 0 0 0 REV__ENST00000394806.6_1_16:46836560-46836860:-|nuORF REV__ENST00000394806.6_1_16:46836560-46836860:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3133544921875 2 615.813325 1229.6121 1.0823 0.00066652 -3.1678 -0.0019508 -2.0855 -0.0012843 615.8116240807174 64.392 0.3141 64.382 64.214 64.528 -0.010536 26 15 2 0 0 0 0.2143 1 35253 35253 21.747 1.3321 1 5766300 + 51573 26455 34811 35606 59988 59988 0.0064748665417937445 QYVLFDWFL 9 Unmodified _QYVLFDWFL_ 0 0 0 REV__ENST00000394806.6_1_16:46836560-46836860:-|nuORF REV__ENST00000394806.6_1_16:46836560-46836860:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 615.813325 1229.6121 1.0823 0.00066652 -3.1678 -0.0019508 -2.0855 -0.0012843 615.8116240807174 64.392 0.3141 64.382 64.214 64.528 -0.010536 0.015969 -0.00047925 NaN 21.747 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5766300 + 51574 26455 34811 35606 0.0064748665417937445 QYVLWHVI 8 Unmodified _QYVLWHVI_ 0 0 0 REV__ENST00000315691.7_1_3:143708817-143709024:+|nuORF REV__ENST00000315691.7_1_3:143708817-143709024:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1983947753906 3 353.19916 1056.57565 0.97145 0.00034312 -0.46861 -0.00016551 0.50284 0.0001776 353.1990152554776 22.875 0.24533 20.097 19.887 20.132 -2.7784 28 19 2 0 0 0 0.77186 1 12280 12280 10.824 0.024421 1 5891700 + 51575 25462 34812 35607 59989 59989 0.04962654548126011 QYVNEVFNF 9 Unmodified _QYVNEVFNF_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2752075195312 2 580.274564 1158.53457 0.23194 0.00013459 -1.3892 -0.0008061 -1.1572 -0.00067151 580.2739786489311 77.98 0.40056 77.98 77.771 78.172 0 55 17 5 0 0 0 0.042911 2 43287 43287;43382 48.346 37.522 1 2469700 51576 536 34813 35608 59990;59991 59990 -0.03835151282009974 QYVNEVFNF 9 Unmodified _QYVNEVFNF_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2730712890625 2 580.274564 1158.53457 -0.26483 -0.00015368 -1.2514 -0.00072615 -1.5162 -0.00087983 580.2738132873338 78.451 0.59281 77.965 77.757 78.349 -0.48596 81 25 5 0 0 0 0.010818 2 42903 42903;43003 78.149 58.892 1 17829000 51577 536 34813 35608 59992;59993 59992 -0.03835151282009974 QYVNEVFNF 9 Unmodified _QYVNEVFNF_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2748413085938 2 580.274564 1158.53457 0.64992 0.00037713 -0.036464 -2.1159E-05 0.61346 0.00035597 580.2740640833451 77.909 0.19601 77.961 77.89 78.086 0.052452 10 7 2 0 0 0 0.019303 1 43047 43047 64.236 47.294 1 1858200 51578 536 34813 35608 59994 59994 -0.03835151282009974 QYVNEVFNF 9 Unmodified _QYVNEVFNF_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2742309570312 2 580.274564 1158.53457 0.77151 0.00044769 -1.0402 -0.0006036 -0.26868 -0.00015591 580.273679938105 85.801 0.42161 79.626 79.407 79.829 -6.1757 56 23 3 0 0 0 0.0095811 1 56551 56551 81.613 58.877 1 66271000 51579 536 34813 35608 59995 59995 -0.03835151282009974 QYVNEVFNF 9 Unmodified _QYVNEVFNF_ 0 0 0 nc|ENSG00000023171|Q3KR37-3|GRAMD1B;nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B nc|ENSG00000023171|Q3KR37-3|GRAMD1B MSMS AL20221201_MKP_PDAC_01 4 580.2742309570312 2 580.274564 1158.53457 NaN NaN NaN NaN NaN NaN NaN 85.637 1 79.461 78.961 79.961 -6.1757 0 0 0 0.04157 1 56415 56415 61.357 33.729 1 51580 536 34813 35608 59996 59996 -0.03835151282009974 QYVSAFSKL 9 Unmodified _QYVSAFSKL_ 0 0 0 nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7816772460938 2 521.782025 1041.5495 0.05168 2.6966E-05 0.98322 0.00051303 1.0349 0.00053999 521.7818696979343 51.801 0.33778 51.367 51.174 51.512 -0.43367 52 17 4 0 0 0 0.025842 1 27914 27914 57.722 11.972 1 25619000 51581 7320 34814 35609 59997 59997 0.030383405859993218 QYVSAFSKL 9 Unmodified _QYVSAFSKL_ 0 0 0 nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7819213867188 2 521.782025 1041.5495 -0.28665 -0.00014957 0.77417 0.00040395 0.48752 0.00025438 521.782245486744 51.444 0.25296 51.39 51.246 51.499 -0.053871 29 12 3 0 0 0 0.018061 1 27818 27818 65.474 17.725 1 6406700 51582 7320 34814 35609 59998 59998 0.030383405859993218 QYVSAFSKL 9 Unmodified _QYVSAFSKL_ 0 0 0 nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7827758789062 2 521.782025 1041.5495 0.83259 0.00043443 -0.18051 -9.4189E-05 0.65208 0.00034024 521.7819354309283 57.012 0.42098 51.035 50.811 51.232 -5.9769 63 25 3 0 0 0 0.013609 2 36446 36313;36446 70.332 21.986 1 121220000 51583 7320 34814 35609 59999;60000 60000 0.030383405859993218 QYVSEVEII 9 Unmodified _QYVSEVEII_ 0 0 0 ENSG00000161654|ENST00000293406|LSM12;nc|ENSG00000161654|Q3MHD2-2|LSM12 ENSG00000161654|ENST00000293406|LSM12 ENSG00000161654|ENST00000293406|LSM12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.284423828125 2 540.284597 1078.55464 0.44862 0.00024238 -1.3181 -0.00071214 -0.86947 -0.00046976 540.2840568087986 66.766 0.26248 66.766 66.576 66.839 0 15 11 2 0 0 0 0.05447 1 37213 37213 43.858 16.975 1 939980 51584 6802 34815 35610 60001 60001 0.01850599657973362 QYVTLHSRW 9 Unmodified _QYVTLHSRW_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.208251953125 3 397.208607 1188.60399 0.050867 2.0205E-05 0.32964 0.00013093 0.3805 0.00015114 397.2086202849229 38.133 0.23152 37.861 37.761 37.992 -0.27133 24 10 3 0 0 0 0.34134 1 20079 20079 10.899 6.3701 1 2338300 51585 5275 34816 35611 60002 60002 0.01723352457429428 QYVTLHSRW 9 Unmodified _QYVTLHSRW_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2092590332031 3 397.208607 1188.60399 0.82467 0.00032756 -0.18972 -7.5359E-05 0.63494 0.00025221 397.20849338034344 42.136 0.43107 37.451 37.217 37.648 -4.6846 74 26 4 0 0 0 0.34134 1 25347 25347 14.957 5.9809 1 55124000 51586 5275 34816 35611 60003 60003 0.01723352457429428 QYVTLHSRW 9 Unmodified _QYVTLHSRW_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3095703125 2 595.309272 1188.60399 0.28297 0.00016846 0.25329 0.00015079 0.53626 0.00031924 595.309030321413 42.169 0.24152 37.485 37.317 37.559 -4.6846 22 15 2 0 0 0 0.025842 1 25420 25420 57.722 21.595 1 8980600 51587 5275 34816 35611 60004 60004 0.01723352457429428 QYVVDLTSF 9 Unmodified _QYVVDLTSF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.271240234375 2 536.27149 1070.52843 0.26976 0.00014466 1.0986 0.00058917 1.3684 0.00073383 536.2719744880102 78.09 0.29948 78.09 77.922 78.222 0 35 12 4 0 0 0 0.042911 2 43456 43354;43456 48.346 29.089 1 3401500 51588 4742 34817 35612 60005;60006 60006 -0.004016695135305781 QYVVDLTSF 9 Unmodified _QYVVDLTSF_ 0 0 0 ENST00000487953.1_1_1:233091430-233112053:+|nuORF;ENST00000494689.5_1_1:233086425-233113974:+|nuORF;ENSG00000135778|ENST00000366628|NTPCR ENST00000487953.1_1_1:233091430-233112053:+|nuORF ENST00000487953.1_1_1:233091430-233112053:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2723999023438 2 536.27149 1070.52843 1.0842 0.00058144 0.19291 0.00010345 1.2771 0.00068489 536.2714386950756 86.238 0.54964 80.062 79.829 80.379 -6.1757 53 29 2 0 0 0 0.015445 2 56885 56752;56885 68.081 20.332 1 74226000 51589 4742 34817 35612 60007;60008 60008 -0.004016695135305781 QYVVTVDDSPV 11 Unmodified _QYVVTVDDSPV_ 0 0 0 REV__nc|ENSG00000156026|Q8NE86-2|MCU REV__nc|ENSG00000156026|Q8NE86-2|MCU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.87158203125 3 407.871438 1220.59248 -0.23396 -9.5424E-05 1.848 0.00075377 1.6141 0.00065834 407.8721555187557 33.267 0.30946 33.108 32.913 33.223 -0.15918 29 12 3 0 0 0 0.69155 1 17354 17354 5.0475 2.7948 1 2801500 + 51590 29719 34818 35613 60009 60009 -0.008989341472670276 QYVYWLHML 9 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ QYVYWLHM(1)L QYVYWLHM(60)L 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.3118896484375 2 634.810259 1267.60597 0.089775 5.699E-05 -0.78484 -0.00049822 -0.69506 -0.00044123 634.8098001880718 72.858 0.32897 72.9 72.7 73.029 0.041733 43 15 3 0 0 0 0.023761 2 40063 40063;40164 59.795 45.889 1 96055000 51591 4760 34819 35614 60010;60011 60010 864 -0.01713354848993731 QYVYWLHML 9 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ QYVYWLHM(1)L QYVYWLHM(60)L 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8096313476562 2 634.810259 1267.60597 0.13404 8.5089E-05 -0.95757 -0.00060788 -0.82354 -0.00052279 634.8097377798505 73.092 0.82335 73.134 72.719 73.543 0.041725 97 38 5 0 0 0 0.023761 1 40271 40271 59.795 40.433 1 140170000 51592 4760 34819 35614 60012 60012 864 -0.01713354848993731 QYVYWLHML 9 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ QYVYWLHM(1)L QYVYWLHM(71)L 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.810791015625 2 634.810259 1267.60597 1.0679 0.00067789 -0.85812 -0.00054475 0.20974 0.00013314 634.8099433879545 88.211 1.2727 82.035 81.344 82.617 -6.1757 224 70 4 0 0 0 0.013419 6 58212 57829;57953;58084;58212;58341;58472 70.865 55.017 1 77501000 51593 4760 34819 35614 60013;60014;60015;60016;60017;60018 60016 864 -0.01713354848993731 QYVYWLHML 9 Oxidation (M) _QYVYWLHM(Oxidation (M))L_ QYVYWLHM(1)L QYVYWLHM(40)L 0 0 1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MSMS AL20221201_MKP_PDAC_01 4 634.8423461914062 2 634.810259 1267.60597 NaN NaN NaN NaN NaN NaN NaN 96.872 1 90.697 90.197 91.197 -6.1757 0 0 0 0.11925 1 64197 64197 40.449 7.6629 1 51594 4760 34819 35614 60019 60019 864 -0.01713354848993731 QYVYWLHML 9 Unmodified _QYVYWLHML_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.812255859375 2 626.812802 1251.61105 0.28644 0.00017955 0.024598 1.5418E-05 0.31104 0.00019496 626.8126831049331 88.617 0.28738 88.665 88.466 88.754 0.047859 29 11 3 0 0 0 0.03568 1 49246 49246 59.795 32.572 1 47656000 51595 4760 34819 35615 60020 60020 -0.004690509863849002 QYVYWLHML 9 Unmodified _QYVYWLHML_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8134765625 2 626.812802 1251.61105 0.59877 0.00037532 0.057177 3.5839E-05 0.65594 0.00041115 626.8128445519513 99.158 0.17144 92.982 92.894 93.066 -6.1757 36 9 5 0 0 0 0.024882 1 65917 65917 78.445 48.604 1 1274200000 51596 4760 34819 35615 60021 60021 -0.004690509863849002 QYWEAQGWTF 10 Unmodified _QYWEAQGWTF_ 0 0 0 ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 ENST00000523948.5_1_8:56686169-56737149:+|nuORF ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.7918090820312 2 658.290745 1314.56694 0.76061 0.00050071 -0.71878 -0.00047317 0.04183 2.7536E-05 658.7915692301716 92.195 0.55848 86.02 85.788 86.346 -6.1757 74 33 3 0 0 0 0.012412 3 60983 60860;60983;61111 106.94 81.949 1 30866000 51597 4948 34820 35616 60022;60023;60024 60023 -0.0777636387902021 QYWKWKRFAWL 11 Unmodified _QYWKWKRFAWL_ 0 0 0 REV__nc|ENSG00000130294|Q12756|KIF1A REV__nc|ENSG00000130294|Q12756|KIF1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.4318237304688 2 806.432796 1610.85104 NaN NaN NaN NaN NaN NaN NaN 81.102 1 81.162 80.662 81.662 0.059929 0 0 0 0.9435 1 44846 44846 0 0 1 + 51598 19712 34821 35617 60025 60025 0.07004686676145866 QYWYRFLF 8 Unmodified _QYWYRFLF_ 0 0 0 REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF REV__ENST00000281419.7_1_2:9543485-9543617:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.8724975585938 3 408.206315 1221.59712 -0.23027 -9.3997E-05 -0.30159 -0.00012311 -0.53186 -0.00021711 408.20629467735534 32.88 0.14265 32.721 32.645 32.787 -0.15918 8 5 2 0 0 0 8.7369 1 17121 17121 4.3292 1.334 1 1083700 + 51599 25196 34822 35618 60026 60026 -0.004819604231670382 QYYRLVTAT 9 Unmodified _QYYRLVTAT_ 0 0 0 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8656311035156 3 372.201229 1113.58186 -0.33134 -0.00012332 0.4687 0.00017445 0.13737 5.1128E-05 372.2014413915087 35.013 1.2544 34.791 34.099 35.353 -0.2224 92 56 2 0 0 0 0.56345 1 18133 18133 2.086 0.34373 1 34936000 51600 10772 34823 35619 60027 60027 0.029611279890104925 QYYRLVTAT 9 Unmodified _QYYRLVTAT_ 0 0 0 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8660583496094 3 372.201229 1113.58186 0.018399 6.8482E-06 -1.0933 -0.00040693 -1.0749 -0.00040008 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.51218 1 18614 18614 4.1895 0 1 285750000 51601 10772 34823 35619 60028 60028 0.029611279890104925 RAADAILTEF 10 Unmodified _RAADAILTEF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7944946289062 2 553.795663 1105.57677 0.38495 0.00021318 -1.2728 -0.00070486 -0.88783 -0.00049168 553.7948268439386 62.182 0.39514 62.182 61.996 62.391 0 64 22 4 0 0 0 0.16005 2 34638 34638;34739 38.615 14.594 1 34669000 51602 16188 34824 35620 60029;60030 60029 0.028208241263882883 RAADAILTEF 10 Unmodified _RAADAILTEF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7958984375 2 553.795663 1105.57677 0.80677 0.00044678 -1.3121 -0.00072663 -0.50533 -0.00027985 553.7948242413037 62.585 0.3489 62.097 61.894 62.243 -0.48764 24 16 2 0 0 0 0.49559 1 34089 34089 16.566 2.6598 1 3424700 51603 16188 34824 35620 60031 60031 0.028208241263882883 RAADQFDIY 9 Unmodified _RAADQFDIY_ 0 0 0 nc|nan|Q7Z6I8-2|C5orf24;ENSG00000181904|ENST00000394976|C5orf24 nc|nan|Q7Z6I8-2|C5orf24 nc|nan|Q7Z6I8-2|C5orf24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.763671875 2 549.764363 1097.51417 0.86117 0.00047344 -1.0509 -0.00057773 -0.18971 -0.00010429 549.7638642136507 46.4 0.39664 46.4 46.21 46.607 0 64 18 5 0 0 0 0.26811 1 25426 25426 24.991 12.459 1 24262000 51604 9005 34825 35621 60032 60032 -0.03068321941805152 RAAEGYLYV 9 Unmodified _RAAEGYLYV_ 0 0 0 REV__nc|ENSG00000160282|O95954-3|FTCD REV__nc|ENSG00000160282|O95954-3|FTCD MSMS AL20221201_MKP_PDAC_01 4 521.2730102539062 2 521.271824 1040.5291 NaN NaN NaN NaN NaN NaN NaN 102.71 1 96.536 96.036 97.036 -6.1757 0 0 0 0.7818 1 68913 68913 6.7232 0.96273 1 + 51605 21528 34826 35622 60033 60033 0.010451699261693648 RAAEHSGVLS 10 Unmodified _RAAEHSGVLS_ 0 0 0 ENST00000310924.6_1_17:77914006-77914372:-|nuORF ENST00000310924.6_1_17:77914006-77914372:-|nuORF ENST00000310924.6_1_17:77914006-77914372:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7688598632812 2 513.76998 1025.52541 0.99638 0.00051191 1.5694 0.00080632 2.5658 0.0013182 513.7708269921176 37.971 0.79764 33.602 33.017 33.814 -4.3689 121 47 4 0 0 0 0.29752 1 22111 22111 27.629 1.2875 1 98781000 51606 11682 34827 35623 60034 60034 0.013665001523577303 RAAEILYYF 9 Unmodified _RAAEILYYF_ 0 0 0 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 ENSG00000112893|ENST00000261483|MAN2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3031616210938 2 573.303124 1144.5917 NaN NaN NaN NaN NaN NaN NaN 74.414 1 73.939 73.439 74.439 -0.47588 0 0 0 0.61214 1 40728 40728 12.241 2.1667 1 51607 2929 34828 35624 60035 60035 0.02518315994348086 RAAFGGWGFCH 11 Unmodified _RAAFGGWGFCH_ 0 0 0 ENST00000517503.1_3_8:144103316-144103727:+|nuORF ENST00000517503.1_3_8:144103316-144103727:+|nuORF ENST00000517503.1_3_8:144103316-144103727:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.774658203125 2 604.774542 1207.53453 NaN NaN NaN NaN NaN NaN NaN 4.7622 1 4.6894 4.1894 5.1894 -0.072869 0 0 0 0.9435 1 2354 2354 0 0 1 51608 14676 34829 35625 60036 60036 -0.06093429762972846 RAAGYAHGLIF 11 Unmodified _RAAGYAHGLIF_ 0 0 0 NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5496215820312 3 392.548852 1174.62473 0.038833 1.5244E-05 -0.72415 -0.00028426 -0.68532 -0.00026902 392.8823528640202 22.253 0.23252 22.267 22.134 22.366 0.013807 15 9 3 0 0 0 0.72952 1 11436 11436 0.50596 0 1 547180 51609 16667 34830 35626 60037 60037 0.0443994283707525 RAAGYAHGLIF 11 Unmodified _RAAGYAHGLIF_ 0 0 0 NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant NEURL4|p.V944I|1|0.07|ENSG00000215041|chr17:7321906-7321906|C/T|missense_variant MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 392.548852 1174.62473 0.23416 9.192E-05 -1.5856 -0.00062242 -1.3514 -0.0005305 392.8822523230974 25.231 0.096493 22.348 22.309 22.406 -2.8831 0.040494 -0.0007471 NaN 0.50596 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1660300 51610 16667 34830 35626 0.0443994283707525 RAALFRSSL 9 Unmodified _RAALFRSSL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000462389.1_1_20:33231889-33264889:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3029174804688 2 510.801083 1019.58761 0.034655 1.7702E-05 -0.51783 -0.00026451 -0.48318 -0.00024681 510.80070113000323 36.561 0.1468 36.582 36.515 36.661 0.021542 10 6 2 0 0 0 0.38785 1 19388 19388 13.042 2.9685 1 3304700 51611 1972 34831 35627 60038 60038 0.07860271291337995 RAALFRSSL 9 Unmodified _RAALFRSSL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000462389.1_1_20:33231889-33264889:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8021240234375 2 510.801083 1019.58761 1.0714 0.00054726 -0.3958 -0.00020217 0.67558 0.00034509 510.8011583787361 40.864 0.31612 36.256 36.116 36.432 -4.6079 31 19 2 0 0 0 0.18144 1 24440 24440 24.991 9.1438 1 9873700 51612 1972 34831 35627 60039 60039 0.07860271291337995 RAALHFFNF 9 Unmodified _RAALHFFNF_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7974243164062 2 561.795801 1121.57705 1.503 0.00084435 0.54998 0.00030898 2.0529 0.0011533 561.79625841037 66.383 0.23987 66.392 66.26 66.5 0.0095596 23 11 3 0 0 0 0.085319 1 36425 36425 39.957 20.7 1 4066200 51613 3395 34832 35628 60040 60040 0.021122886368857507 RAALHFFNF 9 Unmodified _RAALHFFNF_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1;nc|ENSG00000118849|P49788-2|RARRES1;ENST00000498640.1_1_3:158422689-158450240:-|nuORF ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5665283203125 3 374.866293 1121.57705 1.0135 0.00037993 0.77271 0.00028966 1.7862 0.00066959 374.8665998545719 66.344 0.25961 66.353 66.26 66.519 0.0095596 21 12 2 0 0 0 0.21834 1 36362 36362 2.4985 1.8717 1 2996800 51614 3395 34832 35628 60041 60041 0.021122886368857507 RAALPTPAL 9 Unmodified _RAALPTPAL_ 0 0 0 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 ENSG00000076201|ENST00000265562|PTPN23 MSMS AL20221201_MKP_PDAC_01 4 455.2796936035156 2 455.279452 908.544351 NaN NaN NaN NaN NaN NaN NaN 55.146 1 49.225 48.725 49.725 -5.9211 0 0 0 0.032808 1 35071 35071 65.235 16.889 1 51615 1181 34833 35629 60042 60042 0.08642081514017264 RAAMLKDNK 9 Unmodified _RAAMLKDNK_ 0 0 0 ENSG00000122971|ENST00000242592|ACADS ENSG00000122971|ENST00000242592|ACADS ENSG00000122971|ENST00000242592|ACADS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7919921875 2 523.792401 1045.57025 NaN NaN NaN NaN NaN NaN NaN 19.064 1 19.064 18.564 19.564 0 0 0 0 0.79771 1 9514 9514 6.2058 0.47393 1 51616 3674 34834 35630 60043 60043 0.04928607693977938 RAAPEHISY 9 Unmodified _RAAPEHISY_ 0 0 0 ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2675170898438 2 522.267073 1042.51959 0.32587 0.00017019 0.76441 0.00039922 1.0903 0.00056941 522.2672991254807 24.143 0.33785 21.316 21.091 21.428 -2.8273 31 18 2 0 0 0 0.1685 1 13157 13157 26.268 4.7312 1 3719400 51617 7734 34835 35631 60044 60044 3.4016406743830885E-05 RAAPFSLEY 9 Unmodified _RAAPFSLEY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.271728515625 2 527.271824 1052.5291 0.00056747 2.9921E-07 -0.23623 -0.00012456 -0.23566 -0.00012426 527.2715493041865 54.773 0.31596 54.306 54.084 54.4 -0.46664 40 15 3 0 0 0 0.14 1 29732 29732 29.082 3.6823 1 43938000 51618 8926 34836 35632 60045 60045 0.004931699261760514 RAAPFSLEY 9 Unmodified _RAAPFSLEY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2726440429688 2 527.271824 1052.5291 0.97605 0.00051465 1.2028 0.00063422 2.1789 0.0011489 527.2721754289046 60.27 0.40467 54.156 53.886 54.29 -6.1147 50 20 3 0 0 0 0.044011 2 38800 38670;38800 47.749 3.8904 1 93839000 51619 8926 34836 35632 60046;60047 60047 0.004931699261760514 RAAPGKAL 8 Unmodified _RAAPGKAL_ 0 0 0 ENST00000528273.5_1_17:43509052-43510583:-|nuORF ENST00000528273.5_1_17:43509052-43510583:-|nuORF ENST00000528273.5_1_17:43509052-43510583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2458801269531 2 392.245412 782.476272 -0.37388 -0.00014665 -0.033492 -1.3137E-05 -0.40737 -0.00015979 392.2454782619006 20.257 0.1703 20.285 20.201 20.372 0.028357 13 8 2 0 0 0 0.74163 1 10257 10257 13.508 0 1 546210 51620 14853 34837 35633 60048 60048 0.076332566540259 RAARLKYA 8 Unmodified _RAARLKYA_ 0 0 0 REV__nc|ENSG00000161533|Q15067-3|ACOX1 REV__nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 948.57470703125 1 948.57376 947.566484 -0.30715 -0.00029135 -0.044905 -4.2595E-05 -0.35205 -0.00033395 948.5738912353919 103.39 0.073128 103.35 103.28 103.36 -0.047928 4 2 2 0 0 0 0.80992 1 57419 57419 0.69038 0 1 3110500 + 51621 21597 34838 35634 60049 60049 0.09060305982450245 RAARNVLHLRR 11 Unmodified _RAARNVLHLRR_ 0 0 0 REV__ENST00000477440.6_1_3:57112609-57112699:-|nuORF REV__ENST00000477440.6_1_3:57112609-57112699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.4209594726562 2 681.421085 1360.82762 NaN NaN NaN NaN NaN NaN NaN 103.64 1 103.6 103.1 104.1 -0.047928 0 0 0 0.94307 1 57558 57558 0.30703 0 1 + 51622 27613 34839 35635 60050 60050 0.16163685682181494 RAASVFVLY 9 Unmodified _RAASVFVLY_ 0 0 0 ENSG00000148229|ENST00000374171|POLE3;ENST00000479871.1_1_9:116172333-116172573:-|nuORF ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2920532226562 2 513.292559 1024.57057 1.1838 0.00060762 -0.62974 -0.00032324 0.55404 0.00028438 513.2920843953023 64.133 0.49492 64.122 63.803 64.298 -0.010536 76 24 5 0 0 0 0.10247 1 35041 35041 32.786 0.4802 1 42376000 51623 5908 34840 35636 60051 60051 0.05926350685513171 RAAVRLVRRH 10 Unmodified _RAAVRLVRRH_ 0 0 0 REV__ENST00000483208.5_2_15:42694555-42694738:+|nuORF REV__ENST00000483208.5_2_15:42694555-42694738:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3923950195312 2 617.391796 1232.76904 1.4095 0.00087021 4.228 0.0026103 5.6375 0.0034805 617.3950686171997 103.26 0.090416 97.088 97.038 97.128 -6.1757 31 26 2 0 0 0 0.71276 1 69244 69244 1.4819 0.28856 1 3985400 + 51624 27737 34841 35637 60052 60052 0.16196629107730587 RACLHFHM 8 Unmodified _RACLHFHM_ 0 0 0 ENST00000462874.1_1_10:100173939-100174892:-|nuORF ENST00000462874.1_1_10:100173939-100174892:-|nuORF ENST00000462874.1_1_10:100173939-100174892:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7654113769531 2 507.741657 1013.46876 NaN NaN NaN NaN NaN NaN NaN 72.82 1 72.344 71.844 72.844 -0.47588 0 0 0 0.9706 1 39851 39851 6.3541 0.59368 1 51625 13687 34842 35638 60053 60053 -0.037435422095427384 RACPPEPPPEH 11 Unmodified _RACPPEPPPEH_ 0 0 0 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.529541015625 3 410.52924 1228.56589 0.40724 0.00016718 0.73621 0.00030223 1.1434 0.00046942 410.5294559732986 52.291 0.48315 52.232 51.983 52.466 -0.058918 56 23 3 0 0 0 0.58219 1 28367 28367 9.7643 4.4674 1 4894500 51626 567 34843 35639 60054 60054 -0.039249015195764514 RACVHVYKVL 10 Unmodified _RACVHVYKVL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MSMS AL20221201_MKP_PDAC_01 4 396.5614318847656 3 396.562104 1186.66448 NaN NaN NaN NaN NaN NaN NaN 75.809 1 69.633 69.133 70.133 -6.1757 0 0 0 0.61917 1 49586 49586 12.873 3.8964 1 51627 2181 34844 35640 60055 60055 0.07861746516141466 RAEDILPTY 9 Unmodified _RAEDILPTY_ 0 0 0 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2821655273438 2 539.282389 1076.55022 0.29985 0.00016171 -0.16419 -8.8545E-05 0.13566 7.3161E-05 539.2820282363472 48.096 0.54613 48.096 47.725 48.272 0 73 26 4 0 0 0 0.036857 1 26385 26385 51.63 21.405 1 66610000 51628 10564 34845 35641 60056 60056 0.01501135235048423 RAEDILPTY 9 Unmodified _RAEDILPTY_ 0 0 0 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2814331054688 2 539.282389 1076.55022 0.29842 0.00016093 0.19467 0.00010498 0.49309 0.00026591 539.2824763586955 48.363 0.3311 47.991 47.812 48.143 -0.37172 37 16 3 0 0 0 0.017075 1 25932 25932 66.457 24.617 1 5564300 51629 10564 34845 35641 60057 60057 0.01501135235048423 RAEDILPTY 9 Unmodified _RAEDILPTY_ 0 0 0 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 ENSG00000221963|ENST00000409652|APOL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2827758789062 2 539.282389 1076.55022 1.1083 0.0005977 -1.4754 -0.00079565 -0.36705 -0.00019795 539.282088821801 54.224 0.6655 48.359 47.991 48.656 -5.8653 101 39 4 0 0 0 0.023481 2 34431 34293;34431 60.074 23.947 1 122040000 51630 10564 34845 35641 60058;60059 60059 0.01501135235048423 RAEEHEQI 8 Unmodified _RAEEHEQI_ 0 0 0 KRT75|p.R150H|1|0.04|ENSG00000170454|chr12:52433856-52433856|C/T|missense_variant KRT75|p.R150H|1|0.04|ENSG00000170454|chr12:52433856-52433856|C/T|missense_variant KRT75|p.R150H|1|0.04|ENSG00000170454|chr12:52433856-52433856|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2462768554688 2 506.246338 1010.47812 0.23526 0.0001191 0.11606 5.8755E-05 0.35133 0.00017786 506.2462761092255 28.86 0.096479 28.89 28.847 28.943 0.030106 5 3 2 0 0 0 8.7369 1 15059 15059 4.3292 0 1 1010500 51631 15942 34846 35642 60060 60060 -0.026697791186620634 RAEGEQAQQF 10 Unmodified _RAEGEQAQQF_ 0 0 0 REV__ENST00000464434.1_1_7:45018499-45018613:-|nuORF REV__ENST00000464434.1_1_7:45018499-45018613:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7782592773438 2 582.275626 1162.5367 0.80121 0.00046652 1.5541 0.00090489 2.3553 0.0013714 582.277168853225 54.509 0.44788 48.644 48.401 48.848 -5.8653 55 27 3 0 0 0 0.46514 1 34440 34440 18.146 2.8979 1 30799000 + 51632 27376 34847 35643 60061 60061 -0.03806722544186414 RAEIRRPRLL 10 Unmodified _RAEIRRPRLL_ 0 0 0 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 ENSG00000184389|ENST00000442999|A3GALT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2764587402344 3 427.273834 1278.79967 NaN NaN NaN NaN NaN NaN NaN 98.622 1 98.594 98.094 99.094 -0.028282 0 0 0 1.005 1 54771 54771 0.12286 0.028024 1 51633 9254 34848 35644 60062 60062 0.1714236270213405 RAEPMRSK 8 Unmodified _RAEPMRSK_ 0 0 0 REV__ENSG00000163380|ENST00000420581|LMOD3 REV__ENSG00000163380|ENST00000420581|LMOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.4354858398438 1 974.52001 973.512734 0.24219 0.00023602 -0.83822 -0.00081687 -0.59603 -0.00058084 974.5192919917555 66.204 0.31743 66.204 66.03 66.348 0 36 14 3 0 0 0 0.80232 1 36846 36846 5.2307 0 1 9041500 + 51634 21756 34849 35645 60063 60063 0.024917654884461626 RAEQIAKMVT 10 Unmodified _RAEQIAKMVT_ 0 0 0 REV__nc|ENSG00000110693|P35712-4|SOX6 REV__nc|ENSG00000110693|P35712-4|SOX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8195190429688 2 573.818615 1145.62268 1.7631 0.0010117 0.14643 8.4022E-05 1.9095 0.0010957 573.8187145293223 100.87 0.26558 94.696 94.584 94.85 -6.1757 42 16 4 0 0 0 0.23548 1 67519 67519 31.268 4.3847 1 421620000 + 51635 18713 34850 35646 60064 60064 0.05569146036964412 RAEQSALLL 9 Unmodified _RAEQSALLL_ 0 0 0 REV__ENSG00000181963|ENST00000325719|OR52K2 REV__ENSG00000181963|ENST00000325719|OR52K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2918090820312 2 500.792924 999.571294 0.94594 0.00047372 -0.78317 -0.00039221 0.16277 8.1512E-05 501.2923328911465 75.432 1.1841 69.256 68.801 69.986 -6.1757 96 64 2 0 0 0 0.07087 1 49416 49416 39.95 3.9055 1 13266000 + 51636 23233 34851 35647 60065 60065 0.07149145334562945 RAEWAPHRQAP 11 Unmodified _RAEWAPHRQAP_ 0 0 0 REV__nc|ENSG00000072195|Q15772-1|SPEG REV__nc|ENSG00000072195|Q15772-1|SPEG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.840576171875 2 659.841802 1317.66905 -0.57772 -0.0003812 -0.79272 -0.00052307 -1.3704 -0.00090428 659.8413027252401 29.666 0.17458 29.666 29.567 29.742 0 22 10 3 0 0 0 0.50515 1 15363 15363 16.149 1.7437 1 5141800 + 51637 17510 34852 35648 60066 60066 0.022923469832676346 RAFANGKL 8 Unmodified _RAFANGKL_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7560424804688 2 438.756144 875.497735 -0.026515 -1.1634E-05 2.2935 0.0010063 2.2669 0.00099463 438.7565141578328 32.023 0.14722 31.894 31.793 31.94 -0.12915 8 5 2 0 0 0 0.74163 1 16666 16666 13.508 0 1 828410 51638 4198 34853 35649 60067 60067 0.05500641682760943 RAFANGKL 8 Unmodified _RAFANGKL_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MSMS AL20221201_MKP_PDAC_01 4 438.7566833496094 2 438.756144 875.497735 NaN NaN NaN NaN NaN NaN NaN 35.788 1 31.595 31.095 32.095 -4.1928 0 0 0 0.77249 1 20820 20820 24.674 0.65332 1 51639 4198 34853 35649 60068 60068 0.05500641682760943 RAFANGKL 8 Unmodified _RAFANGKL_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MSMS AL20221201_MKP_PDAC_01 4 438.7517395019531 2 438.756144 875.497735 NaN NaN NaN NaN NaN NaN NaN 35.803 1 31.61 31.11 32.11 -4.1928 0 0 0 0.77249 1 20832 20832 24.674 1.5255 1 51640 4198 34853 35649 60069 60069 0.05500641682760943 RAFDQGADAIY 11 Unmodified _RAFDQGADAIY_ 0 0 0 nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7933959960938 2 613.793652 1225.57275 0.10282 6.311E-05 1.2491 0.00076671 1.352 0.00082982 613.7934013203275 40.361 0.46051 40.361 40.049 40.51 0 94 22 5 0 0 0 0.0033438 2 21761 21656;21761 67.081 43.291 1 219510000 51641 9219 34854 35650 60070;60071 60071 -0.03101265367331507 RAFDQGADAIY 11 Unmodified _RAFDQGADAIY_ 0 0 0 nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.79443359375 2 613.793652 1225.57275 0.69224 0.00042489 2.0014 0.0012285 2.6937 0.0016534 614.297884298491 40.475 0.27579 40.48 40.295 40.571 0.0050545 19 12 2 0 0 0 0.5186 1 21613 21613 18.721 9.1773 1 3152300 51642 9219 34854 35650 60072 60072 -0.03101265367331507 RAFDQGADAIY 11 Unmodified _RAFDQGADAIY_ 0 0 0 nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 nc|ENSG00000184076|Q9UDW1-2|UQCR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.7937622070312 2 613.793652 1225.57275 0.40037 0.00024574 1.8983 0.0011652 2.2987 0.0014109 613.793514276779 46.356 0.72861 41.275 40.723 41.452 -5.0805 120 52 4 0 0 0 0.058008 2 28646 28506;28646 51.488 27.698 1 303100000 51643 9219 34854 35650 60073;60074 60074 -0.03101265367331507 RAFFDELKLK 10 Unmodified _RAFFDELKLK_ 0 0 0 REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9114685058594 3 422.911679 1265.71321 0.2379 0.00010061 0.020629 8.7241E-06 0.25853 0.00010933 422.9114795802444 48.86 0.67901 48.817 48.516 49.195 -0.04369 112 33 6 0 0 0 0.57918 1 26419 26419 12.228 0.70971 1 265230000 + 51644 21524 34855 35651 60075 60075 0.09097938356876512 RAFFDELKLK 10 Unmodified _RAFFDELKLK_ 0 0 0 REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF REV__ENST00000497281.5_1_X:153763381-153774262:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9119873046875 3 422.911679 1265.71321 1.4227 0.00060167 0.67059 0.0002836 2.0933 0.00088527 422.9118928186472 86.913 0.64334 80.737 80.338 80.982 -6.1757 112 34 4 0 0 0 0.41271 2 57257 57135;57257 20.871 2.1499 1 138000000 + 51645 21524 34855 35651 60076;60077 60077 0.09097938356876512 RAFLKKKGP 9 Unmodified _RAFLKKKGP_ 0 0 0 nc|ENSG00000142655|O75381-2|PEX14 nc|ENSG00000142655|O75381-2|PEX14 nc|ENSG00000142655|O75381-2|PEX14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.8383178710938 2 522.837468 1043.66038 1.6535 0.00086452 0.3539 0.00018503 2.0074 0.0010495 522.8375044069348 109.56 2.8772 103.38 100.94 103.82 -6.1757 1186 553 3 0 0 0 0.61256 1 72700 72700 0.6015 0 1 10843000 51646 16237 34856 35652 60078 60078 0.14030025084753106 RAFPYGNVAF 10 Unmodified _RAFPYGNVAF_ 0 0 0 ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1 ENST00000513008.5_1_4:54292015-54325613:+|nuORF ENST00000513008.5_1_4:54292015-54325613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2938232421875 2 571.293091 1140.57163 0.2835 0.00016196 -0.73567 -0.00042028 -0.45216 -0.00025832 571.2933056923717 60.056 0.36963 60.003 59.734 60.103 -0.053062 29 18 2 0 0 0 0.14923 1 32720 32720 39.95 21.803 1 5959700 51647 5675 34857 35653 60079 60079 0.0069656505440889305 RAGDPILTY 9 Unmodified _RAGDPILTY_ 0 0 0 nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3;nc|ENSG00000119977|Q6NUS6-3|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2715759277344 2 503.271824 1004.5291 0.28641 0.00014414 -0.40975 -0.00020621 -0.12334 -6.2074E-05 503.27172925867774 44.041 0.18464 44.041 44.005 44.19 0 14 9 2 0 0 0 0.047788 1 23968 23968 45.7 18.816 1 10075000 51648 16156 34858 35654 60080 60080 0.02701169926183411 RAGKAFPA 8 Unmodified _RAGKAFPA_ 0 0 0 ENST00000547521.5_1_12:44152776-44152941:+|nuORF ENST00000547521.5_1_12:44152776-44152941:+|nuORF ENST00000547521.5_1_12:44152776-44152941:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2373657226562 2 409.237587 816.460622 -0.49892 -0.00020418 -0.83018 -0.00033974 -1.3291 -0.00054392 409.2371607761944 20.395 0.20801 20.395 20.296 20.504 0 55 32 2 0 0 0 0.79669 1 10249 10249 8.5933 0 1 2779600 51649 15124 34859 35655 60081 60081 0.045049701369862305 RAGKAFPA 8 Unmodified _RAGKAFPA_ 0 0 0 ENST00000547521.5_1_12:44152776-44152941:+|nuORF ENST00000547521.5_1_12:44152776-44152941:+|nuORF ENST00000547521.5_1_12:44152776-44152941:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 409.237587 816.460622 -0.49892 -0.00020418 -0.83018 -0.00033974 -1.3291 -0.00054392 409.2371607761944 20.395 0.20801 20.395 20.296 20.504 0 0 0 NaN 8.5933 55 32 2 NaN NaN NaN NaN 0 NaN NaN 0 2779600 51650 15124 34859 35655 0.045049701369862305 RAGKALLL 8 Unmodified _RAGKALLL_ 0 0 0 REV__OSTF1|p.V156I|1|0.09|ENSG00000134996|chr9:75137595-75137595|G/A|missense_variant REV__OSTF1|p.V156I|1|0.09|ENSG00000134996|chr9:75137595-75137595|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2858276367188 2 421.284537 840.554522 NaN NaN NaN NaN NaN NaN NaN 71.052 1 71.052 70.552 71.552 0 0 0 0 0.97444 1 39583 39583 0.79363 0 1 + 51651 20029 34860 35656 60082 60082 0.12786689239283078 RAGKPCGV 8 Unmodified _RAGKPCGV_ 0 0 0 REV__nc|ENSG00000228741|Q96N96|SPATA13 REV__nc|ENSG00000228741|Q96N96|SPATA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2164611816406 2 394.215798 786.417042 -0.077529 -3.0563E-05 0.075757 2.9865E-05 -0.0017718 -6.9846E-07 394.2157790852237 38.206 0.58228 38.223 37.773 38.355 0.01704 64 26 5 0 0 0 0.80722 1 20266 20266 2.3027 0 1 47342000 + 51652 23309 34861 35657 60083 60083 0.01529037368209174 RAGRKRFP 8 Unmodified _RAGRKRFP_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3008422851562 2 494.301585 986.588616 NaN NaN NaN NaN NaN NaN NaN 87.916 1 87.969 87.469 88.469 0.053352 0 0 0 0.97444 1 48902 48902 0.79363 0 1 51653 6155;16276 34862 35658 60084 60084 0.09478530450894596 RAGSLWPS 8 Unmodified _RAGSLWPS_ 0 0 0 REV__ENST00000478253.5_1_3:58223274-58223340:+|nuORF REV__ENST00000478253.5_1_3:58223274-58223340:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2332153320312 2 437.232502 872.450451 0.19044 8.3269E-05 1.1089 0.00048484 1.2993 0.00056811 437.2327875313541 48.124 0.39946 48.124 47.995 48.394 0 23 19 2 0 0 0 0.80311 1 26378 26378 4.756 0 1 5368600 + 51654 27628 34863 35659 60085 60085 0.009123624117705731 RAIEASNAY 9 Unmodified _RAIEASNAY_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7509460449219 2 497.751256 993.487959 -0.19263 -9.5881E-05 -1.0234 -0.0005094 -1.216 -0.00060529 497.75066370866284 21.347 0.25092 21.347 21.227 21.478 0 54 35 2 0 0 0 0.2324 2 10740 10740;10842 20.415 6.5085 1 1784600 51655 4239 34864 35660 60086;60087 60086 -0.00904591113294373 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8192749023438 2 580.819138 1159.62372 0.59342 0.00034467 -0.49662 -0.00028845 0.096799 5.6223E-05 580.8187933235084 57.232 0.44501 57.232 56.974 57.419 0 61 19 4 0 0 0 0.30444 2 31761 31761;31869 27.223 11.975 1 35013000 51656 4825 34865 35661 60088;60089 60088 0.05029683677526009 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8190307617188 2 580.819138 1159.62372 0.39491 0.00022937 -0.93086 -0.00054066 -0.53596 -0.00031129 580.8184949139571 57.704 0.2438 57.215 57.106 57.35 -0.48974 25 11 3 0 0 0 0.30444 1 31360 31360 27.223 11.975 1 3061300 51657 4825 34865 35661 60090 60090 0.05029683677526009 RAIEDPILAY 10 Unmodified _RAIEDPILAY_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.820068359375 2 580.819138 1159.62372 0.93048 0.00054044 1.3338 0.00077467 2.2642 0.0013151 580.8201102782496 63.451 0.5398 57.275 57.075 57.615 -6.1757 74 30 3 0 0 0 0.10406 2 41106 40968;41106 45.74 25.325 1 58615000 51658 4825 34865 35661 60091;60092 60092 0.05029683677526009 RAIEIYTDM 9 Oxidation (M) _RAIEIYTDM(Oxidation (M))_ RAIEIYTDM(1) RAIEIYTDM(100) 0 0 1 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2741088867188 2 564.273706 1126.53286 -0.22501 -0.00012697 -0.017846 -1.007E-05 -0.24285 -0.00013704 564.2739337119307 35.181 0.34815 35.181 34.958 35.306 0 49 17 4 0 0 0 0.008513 2 18534 18534;18646 99.755 55.897 1 18591000 51659 2318 34866 35662 60093;60094 60093 399 -0.025345283622755232 RAIEIYTDM 9 Oxidation (M) _RAIEIYTDM(Oxidation (M))_ RAIEIYTDM(1) RAIEIYTDM(89) 0 0 1 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.275146484375 2 564.273706 1126.53286 0.51725 0.00029187 0.57437 0.0003241 1.0916 0.00061597 564.2738208652376 40.169 0.12158 35.639 35.608 35.73 -4.5294 14 11 2 0 0 0 0.0086209 1 23966 23966 89.401 34.627 1 15178000 51660 2318 34866 35662 60095 60095 399 -0.025345283622755232 RAIEIYTDM 9 Unmodified _RAIEIYTDM_ 0 0 0 ENSG00000105402|ENST00000263354|NAPA;ENST00000602082.5_1_19:47996374-48018112:-|nuORF;ENST00000596892.5_1_19:47996374-48000675:-|nuORF;ENST00000602174.5_1_19:47996374-48018112:-|nuORF;ENST00000601927.1_1_19:47996374-47999001:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF;ENST00000597778.5_1_19:47996282-47999001:-|nuORF ENSG00000105402|ENST00000263354|NAPA ENSG00000105402|ENST00000263354|NAPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2775268554688 2 556.276249 1110.53795 1.3345 0.00074233 0.24773 0.00013781 1.5822 0.00088013 556.2758779473162 54.116 0.34595 48.25 48.02 48.366 -5.8653 33 19 2 0 0 0 0.0094097 2 34188 34188;34318 82.529 38.671 1 20787000 51661 2318 34866 35663 60096;60097 60096 -0.01290224499643955 RAINLTQKL 9 Unmodified _RAINLTQKL_ 0 0 0 ENSG00000128829|ENST00000263791|EIF2AK4;nc|ENSG00000128829|Q9P2K8-2|EIF2AK4 ENSG00000128829|ENST00000263791|EIF2AK4 ENSG00000128829|ENST00000263791|EIF2AK4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7266235351562 2 528.82984 1055.64513 0.96026 0.00050781 0.67304 0.00035592 1.6333 0.00086373 528.8300675425065 41.084 0.19584 36.477 36.387 36.583 -4.6079 16 11 2 0 0 0 0.1735 1 24567 24567 13.906 0 1 6685600 51662 4093 34867 35664 60098 60098 0.11953113496883816 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303|ENST00000375472|SUSD3 REV__ENSG00000157303|ENST00000375472|SUSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7746887207031 2 436.774868 871.535184 0.97113 0.00042416 -0.79515 -0.0003473 0.17598 7.6863E-05 436.7744278921096 79.658 0.38643 79.169 78.968 79.354 -0.48932 40 17 3 0 0 0 0.81107 1 43591 43591 0 0 1 3610000 + 51663 21375 34868 35665 60099 60099 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303|ENST00000375472|SUSD3 REV__ENSG00000157303|ENST00000375472|SUSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7745361328125 2 436.774868 871.535184 0.54024 0.00023596 -0.42345 -0.00018495 0.11679 5.1011E-05 436.77456343931095 82.75 0.50282 82.253 82.008 82.511 -0.49751 34 21 2 0 0 0 0.81107 2 45262 45262;45369 0 0 1 962880 + 51664 21375 34868 35665 60100;60101 60100 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303|ENST00000375472|SUSD3 REV__ENSG00000157303|ENST00000375472|SUSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7748107910156 2 436.774868 871.535184 0.5304 0.00023167 -0.20855 -9.1088E-05 0.32186 0.00014058 436.77466659905923 79.142 1.111 79.197 78.936 80.047 0.05497 112 43 5 0 0 0 0.81107 3 43749 43749;43969;44083 0 0 1 252220000 + 51665 21375 34868 35665 60102;60103;60104 60102 0.09427732948347511 RAKGRLTA 8 Unmodified _RAKGRLTA_ 0 0 0 REV__ENSG00000157303|ENST00000375472|SUSD3 REV__ENSG00000157303|ENST00000375472|SUSD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 436.774868 871.535184 0.54024 0.00023596 -0.42345 -0.00018495 0.11679 5.1011E-05 436.77456343931095 82.75 0.50282 82.253 82.008 82.511 -0.49751 0 0 NaN 0 34 21 2 NaN NaN NaN NaN 0 NaN NaN 0 962880 + 51666 21375 34868 35665 0.09427732948347511 RAKKKKKKKK 10 Unmodified _RAKKKKKKKK_ 0 0 0 ENSG00000183354|ENST00000399933|KIAA2026 ENSG00000183354|ENST00000399933|KIAA2026 ENSG00000183354|ENST00000399933|KIAA2026 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.3087158203125 3 424.310108 1269.90849 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.43 103.93 104.93 -0.096809 0 0 0 1.0061 1 56937 56937 0 0 1 51667 9142 34869 35666 60105 60105 0.2843357367239605 RAKSQGMAL 9 Unmodified _RAKSQGMAL_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.266845703125 2 481.266019 960.517485 1.147 0.000552 -0.2754 -0.00013254 0.87158 0.00041946 481.266039984369 19.639 0.26998 16.983 16.85 17.12 -2.6564 41 20 3 0 0 0 0.085319 1 10381 10381 36.506 8.0194 1 7403100 51668 4113 34870 35667 60106 60106 0.035646496311983356 RALAKLLPL 9 Unmodified _RALAKLLPL_ 0 0 0 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.8417663574219 2 497.84222 993.669886 NaN NaN NaN NaN NaN NaN NaN 57.867 1 57.377 56.877 57.877 -0.48974 0 0 0 0.6306 1 31453 31453 11.64 0 1 51669 4135 34871 35668 60107 60107 0.17279793370266816 RALAKLLPL 9 Unmodified _RALAKLLPL_ 0 0 0 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8424377441406 2 497.84222 993.669886 0.86154 0.00042891 0.094751 4.7171E-05 0.95629 0.00047608 497.8422133854142 57.466 0.55361 57.4 57.181 57.735 -0.066036 85 27 5 0 0 0 0.023164 3 31308 31213;31308;31411 60.39 6.814 1 147080000 51670 4135 34871 35668 60108;60109;60110 60109 0.17279793370266816 RALAKLLPL 9 Unmodified _RALAKLLPL_ 0 0 0 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8427734375 2 497.84222 993.669886 1.241 0.00061782 -0.22009 -0.00010957 1.0209 0.00050825 497.842063281964 62.995 0.31355 56.82 56.636 56.949 -6.1757 25 15 2 0 0 0 0.052168 1 40668 40668 44.407 6.2558 1 14960000 51671 4135 34871 35668 60111 60111 0.17279793370266816 RALAKLLPL 9 Unmodified _RALAKLLPL_ 0 0 0 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8426208496094 2 497.84222 993.669886 1.2337 0.00061419 -0.11637 -5.7934E-05 1.1173 0.00055626 497.84212015838307 94.014 0.47164 87.839 87.663 88.135 -6.1757 105 26 5 0 0 0 0.087258 2 62320 62202;62320 36.044 10.954 1 576370000 51672 4135 34871 35668 60112;60113 60113 0.17279793370266816 RALAYQDSI 9 Unmodified _RALAYQDSI_ 0 0 0 ENST00000270001.11_1_19:36858817-36870083:-|nuORF ENST00000270001.11_1_19:36858817-36870083:-|nuORF ENST00000270001.11_1_19:36858817-36870083:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7779541015625 2 518.774731 1035.53491 0.49512 0.00025685 1.6304 0.00084583 2.1256 0.0011027 518.7753735537473 38.793 0.29291 34.342 34.152 34.445 -4.4509 44 18 3 0 0 0 0.08691 1 23006 23006 36.127 1.195 1 42926000 51673 11363 34872 35669 60114 60114 0.018562684378366612 RALDVNVAL 9 Unmodified _RALDVNVAL_ 0 0 0 nc|ENSG00000114115|P09455|RBP1;nc|ENSG00000114115|P09455-2|RBP1;nc|ENSG00000114115|P09455-3|RBP1;ENSG00000114115|ENST00000672186|RBP1 nc|ENSG00000114115|P09455|RBP1 nc|ENSG00000114115|P09455|RBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7877502441406 2 485.787641 969.56073 0.59255 0.00028785 -0.85841 -0.000417 -0.26585 -0.00012915 485.7872487652896 53.776 0.2751 53.324 53.167 53.442 -0.45173 22 13 2 0 0 0 0.078314 1 29079 29079 38.176 2.0485 1 8858300 51674 3019 34873 35670 60115 60115 0.07473162680128098 RALELAVKY 9 Unmodified _RALELAVKY_ 0 0 0 nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80 nc|ENSG00000068885|Q9P2H3-3|IFT80 nc|ENSG00000068885|Q9P2H3-3|IFT80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3191528320312 2 531.818941 1061.62333 -0.14964 -7.9581E-05 -0.84834 -0.00045117 -0.99798 -0.00053075 532.3193422782822 42.197 0.12396 41.89 41.817 41.941 -0.30682 8 5 2 0 0 0 0.21643 1 22424 22424 21.537 4.5947 1 11545000 51675 16044 34874 35671 60116 60116 0.09498308748334239 RALELAVKY 9 Unmodified _RALELAVKY_ 0 0 0 nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80;ENSG00000068885|ENST00000326448|IFT80 nc|ENSG00000068885|Q9P2H3-3|IFT80 nc|ENSG00000068885|Q9P2H3-3|IFT80 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.8825073242188 2 531.818941 1061.62333 0.43046 0.00022893 2.5173 0.0013387 2.9477 0.0015677 531.8203938881879 46.481 0.16295 41.4 41.259 41.422 -5.0805 13 12 2 0 0 0 0.1735 1 28630 28630 18.373 0 1 26390000 51676 16044 34874 35671 60117 60117 0.09498308748334239 RALFLQMKL 9 Unmodified _RALFLQMKL_ 0 0 0 REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.341796875 2 560.338987 1118.66342 2.4664 0.001382 0.63536 0.00035602 3.1017 0.001738 560.3391742012174 94.871 1.0934 94.885 94.568 95.661 0.014244 134 41 5 0 0 0 0.60664 1 52597 52597 1.8442 1.8442 1 228320000 + 51677 22280 34875 35672 60118 60118 0.1088353214727249 RALGPKREVL 10 Unmodified _RALGPKREVL_ 0 0 0 REV__ENST00000278198.2_1_11:40315421-40315586:-|nuORF REV__ENST00000278198.2_1_11:40315421-40315586:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2405700683594 3 380.240018 1137.69823 1.6116 0.0006128 -0.34209 -0.00013008 1.2695 0.00048273 380.2400472407841 21.663 0.545 18.928 18.775 19.32 -2.7348 76 31 4 0 0 0 0.56675 1 11610 11610 12.873 1.3779 1 12553000 + 51678 25180 34876 35673 60119 60119 0.1348849127957692 RALKGAAG 8 Unmodified _RALKGAAG_ 0 0 0 REV__ENSG00000179044|ENST00000314586|EXOC3L1 REV__ENSG00000179044|ENST00000314586|EXOC3L1 MSMS AL20221201_MKP_PDAC_01 4 372.2301940917969 2 372.229762 742.444972 NaN NaN NaN NaN NaN NaN NaN 28.836 1 25.688 25.188 26.188 -3.1482 0 0 0 0.94061 1 16119 16119 12.532 0 1 + 51679 23080 34877 35674 60120 60120 0.06344683619954594 RALPLDTVTF 10 Unmodified _RALPLDTVTF_ 0 0 0 ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENST00000442902.1_1_20:50727220-50727574:-|nuORF ENST00000442902.1_1_20:50727220-50727574:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.2214050292969 3 378.21688 1131.62881 NaN NaN NaN NaN NaN NaN NaN 18.421 1 15.8 15.3 16.3 -2.6215 0 0 0 0.81803 1 9701 9701 11.518 0.61892 1 51680 13414 34878 35675 60121 60121 0.06825987540128153 RALSDKIFFT 10 Unmodified _RALSDKIFFT_ 0 0 0 REV__nc|ENSG00000154803|Q8NFG4-2|FLCN REV__nc|ENSG00000154803|Q8NFG4-2|FLCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8926086425781 3 399.892396 1196.65536 0.30219 0.00012085 0.3523 0.00014088 0.65449 0.00026173 399.89231168682795 68.215 0.43134 68.24 68.088 68.519 0.025146 39 21 2 0 0 0 0.65773 1 37481 37481 4.4062 0 1 3529500 + 51681 21248 34879 35676 60122 60122 0.06489676431465341 RALVDRRPL 9 Unmodified _RALVDRRPL_ 0 0 0 ENSG00000232237|ENST00000449188|ASCL5;nc|ENSG00000232237|Q7RTU5|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 ENSG00000232237|ENST00000449188|ASCL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.568359375 3 365.896363 1094.66726 0.92668 0.00033907 -0.41982 -0.00015361 0.50686 0.00018546 365.8960662686666 26.331 0.4473 23.38 23.094 23.542 -2.9511 72 24 4 0 0 0 0.43515 1 14381 14381 10.8 3.1906 1 64835000 51682 10624 34880 35677 60123 60123 0.12371337965328166 RAMRGGGG 8 Unmodified _RAMRGGGG_ 0 0 0 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1975402832031 2 381.195396 760.37624 -0.025476 -9.7113E-06 1.7725 0.00067567 1.747 0.00066596 381.1961420708476 69.95 0.26314 69.471 69.29 69.553 -0.47903 22 11 3 0 0 0 0.80992 1 38208 38208 0.69038 0 1 2232000 + 51683 20469 34881 35678 60124 60124 -0.013533039513959011 RAMRGGGG 8 Unmodified _RAMRGGGG_ 0 0 0 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 381.195396 760.37624 -0.025476 -9.7113E-06 1.7725 0.00067567 1.747 0.00066596 381.1961420708476 69.95 0.26314 69.471 69.29 69.553 -0.47903 -0.083021 0.00036336 NaN 0.69038 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2232000 + 51684 20469 34881 35678 -0.013533039513959011 RAMRGGGG 8 Unmodified _RAMRGGGG_ 0 0 0 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 381.195396 760.37624 0.33898 0.00012922 1.1407 0.00043484 1.4797 0.00056405 381.19572564258004 69.606 0.49332 69.637 69.409 69.902 0.030914 0.083021 -0.00011832 NaN 0.69038 60 27 3 NaN NaN NaN NaN 0 NaN NaN 0 28977000 + 51685 20469 34881 35678 -0.013533039513959011 RANIAAMAP 9 Unmodified _RANIAAMAP_ 0 0 0 REV__nc|ENSG00000143870|Q15084-3|PDIA6 REV__nc|ENSG00000143870|Q15084-3|PDIA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7471008300781 2 457.747462 913.480371 1.0476 0.00047953 -1.3604 -0.0006227 -0.31278 -0.00014317 457.7466261606379 71.53 0.44823 71.569 71.279 71.727 0.039024 61 20 4 0 0 0 0.41742 1 39403 39403 11.64 0 1 16958000 + 51686 20677 34882 35679 60125 60125 0.0201697808543031 RANIAAMAP 9 Unmodified _RANIAAMAP_ 0 0 0 REV__nc|ENSG00000143870|Q15084-3|PDIA6 REV__nc|ENSG00000143870|Q15084-3|PDIA6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.747462 913.480371 0.45644 0.00020893 -2.0659 -0.00094567 -1.6095 -0.00073674 457.7464856315064 72.088 0.337 71.612 71.415 71.752 -0.47609 -0.041159 -0.00023156 NaN 11.64 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1523100 + 51687 20677 34882 35679 0.0201697808543031 RANIAAMAP 9 Unmodified _RANIAAMAP_ 0 0 0 REV__nc|ENSG00000143870|Q15084-3|PDIA6 REV__nc|ENSG00000143870|Q15084-3|PDIA6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 457.747462 913.480371 1.0476 0.00047953 -1.3604 -0.0006227 -0.31278 -0.00014317 457.7466261606379 71.53 0.44823 71.569 71.279 71.727 0.039024 -0.084337 0.00041438 NaN 11.64 61 20 4 NaN NaN NaN NaN 0 NaN NaN 0 16958000 + 51688 20677 34882 35679 0.0201697808543031 RAPAPGAR 8 Unmodified _RAPAPGAR_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2328491210938 2 398.232836 794.45112 -0.072624 -2.8921E-05 -0.58528 -0.00023308 -0.6579 -0.000262 398.2324974043366 18.75 0.16196 18.756 18.658 18.82 0.0060463 16 7 3 0 0 0 0.63229 1 9509 9509 23.148 0 1 3115600 51689 14767 34883 35680 60126 60126 0.04567201851455138 RAPHPDQVQTL 11 Unmodified _RAPHPDQVQTL_ 0 0 0 ENST00000581786.5_1_17:30349314-30355958:+|nuORF;ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.2267761230469 3 421.226438 1260.65748 -0.25709 -0.00010829 0.87228 0.00036743 0.61518 0.00025913 421.22680651520795 33.579 0.30583 33.42 33.247 33.553 -0.15918 42 12 4 0 0 0 0.57006 2 17478 17478;17578 12.856 1.957 1 10949000 51690 9339 34884 35681 60127;60128 60127 0.0375810516927686 RAPHPDQVQTL 11 Unmodified _RAPHPDQVQTL_ 0 0 0 ENST00000581786.5_1_17:30349314-30355958:+|nuORF;ENST00000583204.5_1_17:30348129-30360999:+|nuORF;ENSG00000185158|ENST00000543378|LRRC37B;nc|ENSG00000185158|Q96QE4-2|LRRC37B;nc|ENSG00000185158|Q96QE4|LRRC37B ENST00000581786.5_1_17:30349314-30355958:+|nuORF ENST00000581786.5_1_17:30349314-30355958:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.226318359375 3 421.226438 1260.65748 1.5224 0.00064128 -1.0687 -0.00045017 0.45369 0.00019111 421.2262568610939 37.316 0.44333 33.033 32.827 33.27 -4.2835 79 26 4 0 0 0 0.67892 2 21807 21807;21927 6.2344 2.9147 1 76288000 51691 9339 34884 35681 60129;60130 60129 0.0375810516927686 RAPPPPSGCSS 11 Unmodified _RAPPPPSGCSS_ 0 0 0 ENST00000554470.5_1_14:35182751-35183904:-|nuORF ENST00000554470.5_1_14:35182751-35183904:-|nuORF ENST00000554470.5_1_14:35182751-35183904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5029296875 3 352.502803 1054.48658 0.051839 1.8273E-05 -0.16396 -5.7797E-05 -0.11212 -3.9524E-05 352.5027703784935 62.607 0.33655 62.607 62.486 62.823 0 30 14 3 0 0 0 0.7326 1 34925 34925 0.40827 0 1 935130 51692 15211 34885 35682 60131 60131 -0.038485484737066145 RAPQPAYA 8 Unmodified _RAPQPAYA_ 0 0 0 ENST00000356079.8_1_2:204131259-204131349:+|nuORF ENST00000356079.8_1_2:204131259-204131349:+|nuORF ENST00000356079.8_1_2:204131259-204131349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2330322265625 2 437.232502 872.450451 0.9556 0.00041782 0.46677 0.00020409 1.4224 0.00062191 437.23282144124914 49.397 0.51305 49.354 49.215 49.728 -0.04369 47 25 2 0 0 0 0.74163 1 26790 26790 13.508 13.508 1 5634200 51693 12086 34886 35683 60132 60132 0.009123624117478357 RAPQPAYA 8 Unmodified _RAPQPAYA_ 0 0 0 ENST00000356079.8_1_2:204131259-204131349:+|nuORF ENST00000356079.8_1_2:204131259-204131349:+|nuORF ENST00000356079.8_1_2:204131259-204131349:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 437.232502 872.450451 0.59812 0.00026152 1.7688 0.00077337 2.3669 0.0010349 437.233351217806 49.454 0.33731 49.454 49.333 49.671 0 0.050323 0.00076754 NaN 13.508 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1555100 51694 12086 34886 35683 0.009123624117478357 RAPSLWPTAP 10 Unmodified _RAPSLWPTAP_ 0 0 0 ENST00000534589.5_1_8:144771463-144773942:+|nuORF ENST00000534589.5_1_8:144771463-144773942:+|nuORF ENST00000534589.5_1_8:144771463-144773942:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2991333007812 2 548.300916 1094.58728 1.0165 0.00055733 -1.9658 -0.0010778 -0.94928 -0.00052049 548.2986943361394 32.352 0.31869 28.496 28.352 28.67 -3.8562 30 18 2 0 0 0 0.38092 1 18397 18397 22.736 0 1 17454000 51695 14955 34887 35684 60133 60133 0.043768515714418754 RAPVQVIH 8 Unmodified _RAPVQVIH_ 0 0 0 nc|ENSG00000175575|Q9BRP4-3|PAAF1;nc|ENSG00000175575|Q9BRP4-2|PAAF1;ENSG00000175575|ENST00000310571|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2769775390625 2 460.277244 918.539935 NaN NaN NaN NaN NaN NaN NaN 37.514 1 37.514 37.014 38.014 0 0 0 0 0.94061 1 19969 19969 12.532 0.89125 1 51696 8529 34888 35685 60134 60134 0.07740617091121749 RAPVQVIH 8 Unmodified _RAPVQVIH_ 0 0 0 nc|ENSG00000175575|Q9BRP4-3|PAAF1;nc|ENSG00000175575|Q9BRP4-2|PAAF1;ENSG00000175575|ENST00000310571|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2771911621094 2 460.277244 918.539935 -0.15904 -7.3201E-05 0.025599 1.1783E-05 -0.13344 -6.1419E-05 460.2772372494829 37.767 0.41537 37.495 37.303 37.719 -0.27133 50 19 3 0 0 0 0.55032 1 19903 19903 30.225 7.0764 1 43787000 51697 8529 34888 35685 60135 60135 0.07740617091121749 RAPVQVIH 8 Unmodified _RAPVQVIH_ 0 0 0 nc|ENSG00000175575|Q9BRP4-3|PAAF1;nc|ENSG00000175575|Q9BRP4-2|PAAF1;ENSG00000175575|ENST00000310571|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2777099609375 2 460.277244 918.539935 0.72687 0.00033456 -0.5004 -0.00023032 0.22647 0.00010424 460.27689398742245 42.141 0.35806 37.457 37.234 37.592 -4.6846 42 22 2 0 0 0 0.70294 1 25393 25393 16.942 2.3606 1 18182000 51698 8529 34888 35685 60136 60136 0.07740617091121749 RAPVQVIH 8 Unmodified _RAPVQVIH_ 0 0 0 nc|ENSG00000175575|Q9BRP4-3|PAAF1;nc|ENSG00000175575|Q9BRP4-2|PAAF1;ENSG00000175575|ENST00000310571|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2780151367188 2 460.277244 918.539935 0.95369 0.00043896 -0.012931 -5.9518E-06 0.94076 0.00043301 460.27725071617914 72.365 0.49839 66.19 66.024 66.522 -6.1757 66 25 3 0 0 0 0.63229 1 47304 47304 23.148 0 1 115020000 51699 8529 34888 35685 60137 60137 0.07740617091121749 RAPVQVIH 8 Unmodified _RAPVQVIH_ 0 0 0 nc|ENSG00000175575|Q9BRP4-3|PAAF1;nc|ENSG00000175575|Q9BRP4-2|PAAF1;ENSG00000175575|ENST00000310571|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 nc|ENSG00000175575|Q9BRP4-3|PAAF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 460.277244 918.539935 0.039262 1.8072E-05 0.18019 8.2939E-05 0.21945 0.00010101 460.2772660824178 37.388 0.33337 37.409 37.263 37.597 0.021545 -0.04442 0.00024261 NaN 30.225 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 13997000 51700 8529 34888 35685 0.07740617091121749 RAQAHELRTI 10 Unmodified _RAQAHELRTI_ 0 0 0 REV__ENSG00000140564|ENST00000268171|FURIN REV__ENSG00000140564|ENST00000268171|FURIN MSMS AL20221201_MKP_PDAC_01 4 398.8955383300781 3 398.894911 1193.6629 NaN NaN NaN NaN NaN NaN NaN 20.94 1 18.247 17.747 18.747 -2.693 0 0 0 0.97044 1 11178 11178 3.8763 1.033 1 + 51701 20485 34889 35686 60138 60138 0.07381828751749708 RAQLLCIHL 9 Unmodified _RAQLLCIHL_ 0 0 0 REV__ENST00000586916.6_1_17:76993962-76996331:-|nuORF REV__ENST00000586916.6_1_17:76993962-76996331:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 356.2121276855469 3 356.211183 1065.61172 NaN NaN NaN NaN NaN NaN NaN 104.69 1 98.511 98.011 99.011 -6.1757 0 0 0 0.85798 1 70090 70090 0.23584 0 1 + 51702 29114 34890 35687 60139 60139 0.08153788453341804 RAQWRRRMRKR 11 Unmodified _RAQWRRRMRKR_ 0 0 0 ENST00000392813.8_1_3:158519897-158520086:+|nuORF ENST00000392813.8_1_3:158519897-158520086:+|nuORF ENST00000392813.8_1_3:158519897-158520086:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.471923828125 2 800.471118 1598.92768 NaN NaN NaN NaN NaN NaN NaN 107.63 1 101.46 100.96 101.96 -6.1757 0 0 0 0.9435 1 71978 71978 0 0 1 51703 12682 34891 35688 60140 60140 0.15217599744323707 RARAAAAAAAP 11 Unmodified _RARAAAAAAAP_ 0 0 0 REV__ENST00000525718.5_1_11:832961-833994:+|nuORF REV__ENST00000525718.5_1_11:832961-833994:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7884521484375 2 498.788507 995.562461 NaN NaN NaN NaN NaN NaN NaN 80.868 1 80.868 80.368 81.368 0 0 0 0 0.9435 1 44896 44896 0 0 1 + 51704 28358 34892 35689 60141 60141 0.06450216488724436 RARAHSIQI 9 Unmodified _RARAHSIQI_ 0 0 0 ENSG00000105640|ENST00000222247|RPL18A ENSG00000105640|ENST00000222247|RPL18A ENSG00000105640|ENST00000222247|RPL18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2091979980469 3 351.20883 1050.60466 1.6489 0.00057911 -0.046051 -1.6173E-05 1.6028 0.00056293 351.2087692731205 19.286 0.22047 16.629 16.455 16.675 -2.6564 27 15 2 0 0 0 0.20507 1 10185 10185 22.658 5.5452 1 3986900 51705 2343 34893 35690 60142 60142 0.08138191897114666 RARDAAEFELF 11 Unmodified _RARDAAEFELF_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.5604553222656 3 442.226326 1323.65715 0.28565 0.00012632 -0.15252 -6.7449E-05 0.13313 5.8873E-05 442.2260055254162 58.014 0.22889 57.525 57.39 57.619 -0.48974 26 10 3 0 0 0 0.60536 1 31522 31522 11.065 6.6591 1 2019600 51706 5884 34894 35691 60143 60143 0.008266854494195286 RAREVIEAL 9 Unmodified _RAREVIEAL_ 0 0 0 nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1;nc|ENSG00000068028|Q9NS23-3|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 nc|ENSG00000068028|Q9NS23-4|RASSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8775634765625 3 352.876857 1055.60874 1.0812 0.00038153 1.4989 0.00052892 2.5801 0.00091045 352.8770591104863 38.586 0.32515 34.217 33.98 34.305 -4.3689 36 20 2 0 0 0 0.14 1 22751 22751 21.59 7.1848 1 11008000 51707 971 34895 35692 60144 60144 0.08316236600194316 RAREYNARL 9 Unmodified _RAREYNARL_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5467529296875 3 383.547623 1147.62104 0.71824 0.00027548 -0.19217 -7.3707E-05 0.52607 0.00020177 383.54750497511293 16.997 0.207 14.411 14.269 14.476 -2.5866 61 35 2 0 0 0 0.40615 1 8796 8796 12.175 5.1377 1 4043000 51708 1206 34896 35693 60145 60145 0.053132730632114544 RARMLPTY 8 Unmodified _RARMLPTY_ 0 0 0 ENST00000557552.1_1_14:105238371-105239528:-|nuORF ENST00000557552.1_1_14:105238371-105239528:-|nuORF ENST00000557552.1_1_14:105238371-105239528:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2760009765625 2 504.276386 1006.53822 2.1946 0.0011067 0.8827 0.00044513 3.0773 0.0015518 504.2767762269015 62.712 0.55437 56.537 56.248 56.803 -6.1757 71 27 3 0 0 0 0.55032 1 40381 40381 30.225 8.4782 1 212520000 51709 15259 34897 35694 60146 60146 0.035212400108548536 RARMVFDNKSF 11 Unmodified _RARMVFDNKSF_ 0 0 0 REV__ENSG00000016082|ENST00000230658|ISL1 REV__ENSG00000016082|ENST00000230658|ISL1 MSMS AL20221201_MKP_PDAC_01 4 685.8555908203125 2 685.853521 1369.69249 NaN NaN NaN NaN NaN NaN NaN 80.769 1 74.594 74.094 75.094 -6.1757 0 0 0 0.58065 1 52994 52994 21.537 8.4945 1 + 51710 17089 34898 35695 60147 60147 0.022430247055581276 RARPATDSF 9 Unmodified _RARPATDSF_ 0 0 0 nc|ENSG00000063046|P23588-2|EIF4B;ENSG00000063046|ENST00000262056|EIF4B nc|ENSG00000063046|P23588-2|EIF4B nc|ENSG00000063046|P23588-2|EIF4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7647399902344 2 510.764697 1019.51484 0.64154 0.00032768 -0.32102 -0.00016397 0.32052 0.00016371 510.764599109794 18.836 0.28819 16.214 16.076 16.364 -2.6215 50 19 3 0 0 0 0.36964 1 9976 9976 13.906 13.906 1 18514000 51711 855 34899 35696 60148 60148 0.0058651749790215035 RARQVQVAL 9 Unmodified _RARQVQVAL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.8199462890625 2 520.819807 1039.62506 1.2371 0.00064433 -0.67901 -0.00035364 0.55813 0.00029068 520.8195626625435 30.601 0.33552 27.104 26.895 27.23 -3.497 23 16 2 0 0 0 0.06187 1 17231 17231 42.095 11.87 1 30484000 51712 16412 34900 35697 60149 60149 0.10683362556937936 RARREMQLCQ 10 Unmodified _RARREMQLCQ_ 0 0 0 REV__ENST00000262585.6_3_8:142205376-142205649:+|nuORF REV__ENST00000262585.6_3_8:142205376-142205649:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8883972167969 3 430.888774 1289.64449 NaN NaN NaN NaN NaN NaN NaN 63.991 1 63.506 63.006 64.006 -0.48512 0 0 0 1.0024 1 34908 34908 0.13989 0 1 + 51713 25027 34901 35698 60150 60150 0.01125627513897598 RARRRRKKKK 10 Unmodified _RARRRRKKKK_ 0 0 0 REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF REV__ENST00000321870.2_1_8:65492938-65493277:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.9719848632812 2 691.973819 1381.93309 NaN NaN NaN NaN NaN NaN NaN 104.16 1 104.11 103.61 104.61 -0.048737 0 0 0 1.0061 1 57834 57834 0 0 1 + 51714 25518 34902 35699 60151 60151 0.2573964659845842 RARRRRRRRRR 11 Unmodified _RARRRRRRRRR_ 0 0 0 ENSG00000185052|ENST00000328041|SLC24A3;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENSG00000185052|ENST00000328041|SLC24A3;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 550.6935424804688 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 106.36 1 100.18 99.682 100.68 -6.1757 0 0 0 0.9435 1 71197 71197 0 0 1 51715 11156;9326 34903 35700 60152 60152 0.2597617122723932 RARRRRRRRRR 11 Unmodified _RARRRRRRRRR_ 0 0 0 ENSG00000185052|ENST00000328041|SLC24A3;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENSG00000185052|ENST00000328041|SLC24A3;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 550.6922607421875 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 106.91 1 100.73 100.23 101.23 -6.1757 0 0 0 0.9435 1 71540 71540 0 0 1 51716 11156;9326 34903 35700 60153 60153 0.2597617122723932 RARRWRRKRRL 11 Unmodified _RARRWRRKRRL_ 0 0 0 REV__ENSG00000224109|ENST00000417339|CENPVL3 REV__ENSG00000224109|ENST00000417339|CENPVL3 MSMS AL20221201_MKP_PDAC_01 4 805.5148315429688 2 805.514174 1609.0138 NaN NaN NaN NaN NaN NaN NaN 103.88 1 97.705 97.205 98.205 -6.1757 0 0 0 0.9435 1 69612 69612 0 0 1 + 51717 24378 34904 35701 60154 60154 0.23364927641341637 RARSAELAP 9 Unmodified _RARSAELAP_ 0 0 0 REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7747497558594 2 485.775065 969.535577 -0.43 -0.00020888 -0.40284 -0.00019569 -0.83284 -0.00040457 485.77493179127106 18.113 0.075741 18.127 18.083 18.159 0.013866 16 11 2 0 0 0 0.58865 1 9057 9057 2.0598 0 1 472830 + 51718 28592 34905 35702 60155 60155 0.04959107877562019 RARSAELAP 9 Unmodified _RARSAELAP_ 0 0 0 REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 485.775065 969.535577 -0.3524 -0.00017119 0.38053 0.00018485 0.028126 1.3663E-05 485.77529519908177 18.138 0.17015 18.138 18.046 18.216 0 0.0054894 0.00016296 NaN 2.0598 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1820500 + 51719 28592 34905 35702 0.04959107877562019 RARSAELAP 9 Unmodified _RARSAELAP_ 0 0 0 REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 485.775065 969.535577 -0.43 -0.00020888 -0.40284 -0.00019569 -0.83284 -0.00040457 485.77493179127106 18.113 0.075741 18.127 18.083 18.159 0.013866 -0.0054894 -0.00059812 NaN 2.0598 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 472830 + 51720 28592 34905 35702 0.04959107877562019 RARSWSFVF 9 Unmodified _RARSWSFVF_ 0 0 0 REV__ENST00000395136.6_2_1:70687083-70687281:+|nuORF REV__ENST00000395136.6_2_1:70687083-70687281:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.2284240722656 3 385.873447 1154.59851 1.1063 0.0004269 0.72704 0.00028054 1.8333 0.00070744 385.8721722726827 43.081 0.28068 38.316 38.096 38.377 -4.7648 24 17 2 0 0 0 0.19891 1 26119 26119 7.609 1.8255 1 6885400 + 51721 26467 34906 35703 60156 60156 0.027396736656100984 RARTILLK 8 Unmodified _RARTILLK_ 0 0 0 REV__ENSG00000127418|ENST00000510644|FGFRL1 REV__ENSG00000127418|ENST00000510644|FGFRL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.8292236328125 2 485.829643 969.644734 NaN NaN NaN NaN NaN NaN NaN 103.58 1 103.53 103.03 104.03 -0.047928 0 0 0 0.97444 1 57522 57522 0.69038 0 1 + 51722 19579 34907 35704 60157 60157 0.158697385677101 RARYTKNW 8 Unmodified _RARYTKNW_ 0 0 0 ENST00000529567.5_1_11:89372457-89431764:+|nuORF;nc|ENSG00000290503|Q9HBA9|FOLH1B;nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1 ENST00000529567.5_1_11:89372457-89431764:+|nuORF ENST00000529567.5_1_11:89372457-89431764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7955932617188 2 547.796332 1093.57811 0.33853 0.00018544 -1.0072 -0.00055177 -0.66872 -0.00036632 547.7956333466402 30.837 0.29318 30.734 30.571 30.864 -0.10269 27 11 4 0 0 0 0.80722 1 16080 16080 2.3027 0.4585 1 18379000 51723 14873 34908 35705 60158 60158 0.03506503005792183 RASDVVLGF 9 Unmodified _RASDVVLGF_ 0 0 0 ENSG00000143891|ENST00000272252|GALM;ENST00000427858.4_1_2:38893303-38907288:+|nuORF ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2658081054688 2 482.266542 962.51853 NaN NaN NaN NaN NaN NaN NaN 56.796 1 56.31 55.81 56.81 -0.48554 0 0 0 0.51965 1 30856 30856 15.248 4.4246 1 51724 5565 34909 35706 60159 60159 0.03577187271753246 RASLNTGHIH 10 Unmodified _RASLNTGHIH_ 0 0 0 REV__nc|ENSG00000180663|Q9BXE9|VN1R3 REV__nc|ENSG00000180663|Q9BXE9|VN1R3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.857421875 3 369.200223 1104.57884 0.76376 0.00028198 -0.57936 -0.0002139 0.1844 6.8081E-05 369.19850241132605 15.324 0.29407 12.797 12.719 13.013 -2.5273 100 62 3 0 0 0 0.23227 1 7963 7963 3.5871 0 1 4472300 + 51725 29823 34910 35707 60160 60160 0.030732976548506485 RATHVTDFF 9 Unmodified _RATHVTDFF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1852722167969 3 365.185691 1092.53524 NaN NaN NaN NaN NaN NaN NaN 45.568 1 45.243 44.743 45.743 -0.32425 0 0 0 0.77016 1 24349 24349 7.1017 2.7725 1 51726 2877 34911 35708 60161 60161 -0.007323118422846164 RAVDEKGWEY 10 Unmodified _RAVDEKGWEY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2025451660156 3 418.20341 1251.5884 -0.81515 -0.0003409 0.78197 0.00032702 -0.033178 -1.3875E-05 418.2038621266943 30.178 0.24773 30.178 30.057 30.305 0 30 11 4 0 0 0 0.061642 1 15654 15654 55.249 38.974 1 5680100 51727 5021 34912 35709 60162 60162 -0.027329788502811425 RAVDEKGWEY 10 Unmodified _RAVDEKGWEY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.8004760742188 2 626.801477 1251.5884 -0.58618 -0.00036742 -0.25849 -0.00016202 -0.84467 -0.00052944 627.3024031968748 30.165 0.20658 30.165 30.078 30.285 0 21 9 3 0 0 0 0.10874 1 15659 15659 51.415 18.63 1 2641500 51728 5021 34912 35709 60163 60163 -0.027329788502811425 RAVDEKGWEY 10 Unmodified _RAVDEKGWEY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8013305664062 2 626.801477 1251.5884 0.62407 0.00039117 -0.1809 -0.00011339 0.44317 0.00027778 626.8011975846299 33.329 0.25394 29.344 29.18 29.434 -3.9853 22 14 2 0 0 0 0.068112 1 19031 19031 61.09 31.249 1 12591000 51729 5021 34912 35709 60164 60164 -0.027329788502811425 RAVDEKGWEY 10 Unmodified _RAVDEKGWEY_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.203857421875 3 418.20341 1251.5884 1.1152 0.00046639 -0.014153 -5.9188E-06 1.1011 0.00046047 418.5375849958142 33.336 0.26596 29.351 29.152 29.418 -3.9853 23 15 2 0 0 0 0.048562 1 19057 19057 59.013 36.238 1 15711000 51730 5021 34912 35709 60165 60165 -0.027329788502811425 RAVFGLPF 8 Unmodified _RAVFGLPF_ 0 0 0 REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.763671875 2 453.763438 905.512323 -0.58071 -0.0002635 -0.49291 -0.00022367 -1.0736 -0.00048717 453.76348071076353 36.064 0.30049 35.815 35.703 36.004 -0.2497 22 13 2 0 0 0 0.67481 1 18914 18914 19.439 9.2556 1 7984700 + 51731 17389 34913 35710 60166 60166 0.055787138309028705 RAVFGLPF 8 Unmodified _RAVFGLPF_ 0 0 0 REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7638549804688 2 453.763438 905.512323 0.42219 0.00019157 0.5411 0.00024553 0.96329 0.00043711 453.7638186856684 40.144 0.66025 35.615 35.356 36.016 -4.5294 95 52 2 0 0 0 0.65867 3 23784 23784;23931;24063 20.871 5.103 1 51929000 + 51732 17389 34913 35710 60167;60168;60169 60167 0.055787138309028705 RAVFGLPF 8 Unmodified _RAVFGLPF_ 0 0 0 REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 453.763438 905.512323 -0.58071 -0.0002635 -0.49291 -0.00022367 -1.0736 -0.00048717 453.76348071076353 36.064 0.30049 35.815 35.703 36.004 -0.2497 0.093423 -1.6846E-05 NaN 20.871 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 7984700 + 51733 17389 34913 35710 0.055787138309028705 RAVFGLPF 8 Unmodified _RAVFGLPF_ 0 0 0 REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF REV__ENST00000401554.5_1_4:38112345-38138953:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 453.763438 905.512323 0.42219 0.00019157 0.5411 0.00024553 0.96329 0.00043711 453.7638186856684 40.144 0.66025 35.615 35.356 36.016 -4.5294 -0.10667 0.00092155 NaN 20.871 95 52 2 NaN NaN NaN NaN 0 NaN NaN 0 51929000 + 51734 17389 34913 35710 0.055787138309028705 RAVFRDLAA 9 Unmodified _RAVFRDLAA_ 0 0 0 REV__ENSG00000111331|ENST00000228928|OAS3 REV__ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.7933044433594 2 509.793258 1017.57196 0.3211 0.0001637 1.5588 0.00079466 1.8799 0.00095835 509.7934475121649 29.121 0.28976 29.151 29.009 29.299 0.030106 32 11 4 0 0 0 0.30202 1 15202 15202 17.113 0 1 8158400 + 51735 18748 34914 35711 60170 60170 0.06387984774266897 RAWIYRLNF 9 Unmodified _RAWIYRLNF_ 0 0 0 REV__ENST00000572680.1_1_17:7221024-7221219:-|nuORF REV__ENST00000572680.1_1_17:7221024-7221219:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2327270507812 3 413.564614 1237.67201 -0.54846 -0.00022683 -0.69849 -0.00028887 -1.247 -0.0005157 413.5647123044985 18.101 0.13393 18.115 18.043 18.177 0.013865 33 23 2 0 0 0 0.61381 1 9061 9061 0.23584 0.076522 1 623990 + 51736 28989 34915 35712 60171 60171 0.06268222108064947 RAYPAAITI 9 Unmodified _RAYPAAITI_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.736572265625 2 488.284734 974.554916 0.59447 0.00029027 1.3712 0.00066952 1.9656 0.00095979 488.28572625129544 66.438 0.36189 60.262 60.079 60.441 -6.1757 32 19 2 0 0 0 0.16418 1 43310 43310 19.257 5.3509 1 11544000 51737 2211 34916 35713 60172 60172 0.06662064168460802 RAYQILNSY 9 Unmodified _RAYQILNSY_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1;ENST00000564643.1_1_16:84104272-84115494:-|nuORF;ENST00000565863.1_1_16:84109176-84124517:-|nuORF ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2963256835938 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 18.246 1 18.259 17.759 18.759 0.013865 0 0 0 0.84737 1 9134 9134 1.8442 0 1 51738 5283 34917 35714 60173 60173 0.018882438462242135 RAYWWSILLF 10 Unmodified _RAYWWSILLF_ 0 0 0 REV__ENSG00000198786|ENST00000361567|MT-ND5 REV__ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.8694458007812 2 677.868966 1353.72338 0.72089 0.00048867 -0.33502 -0.0002271 0.38587 0.00026157 677.8684156456139 100.77 0.10628 100.73 100.68 100.79 -0.04216 9 3 4 0 0 0 0.44373 1 55997 55997 19.257 2.1441 1 4174800 + 51739 24057 34918 35715 60174 60174 0.06066546082115565 RCAHIEAKF 9 Carbamidomethyl (C) _RC(Carbamidomethyl (C))AHIEAKF_ RC(1)AHIEAKF RC(51)AHIEAKF 0 1 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8628540039062 3 377.862442 1130.5655 0.62768 0.00023718 -0.018412 -6.9571E-06 0.60927 0.00023022 377.8624937121336 23.012 0.52484 20.233 19.92 20.445 -2.7784 119 42 5 0 0 0 0.037118 1 12451 12451 51.488 29.951 1 163910000 51740 10370 34919 35716 60175 60175 935 0.005437235512317784 RCAHIEAKF 9 Carbamidomethyl (C) _RC(Carbamidomethyl (C))AHIEAKF_ RC(1)AHIEAKF RC(42)AHIEAKF 0 1 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MSMS AL20221201_MKP_PDAC_01 4 566.2902221679688 2 566.290025 1130.5655 NaN NaN NaN NaN NaN NaN NaN 22.996 1 20.217 19.717 20.717 -2.7784 0 0 0 0.10661 1 12412 12412 41.956 28.05 1 51741 10370 34919 35716 60176 60176 935 0.005437235512317784 RCARRECQTRV 11 Unmodified _RCARRECQTRV_ 0 0 0 ENST00000493776.1_1_19:12605931-12606006:-|nuORF ENST00000493776.1_1_19:12605931-12606006:-|nuORF ENST00000493776.1_1_19:12605931-12606006:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.9024658203125 3 459.903195 1376.68775 0.77585 0.00035681 -0.38477 -0.00017696 0.39108 0.00017986 459.90303999054845 52.765 0.34048 52.701 52.542 52.882 -0.063423 48 16 5 0 0 0 0.59689 1 28555 28555 6.2344 1.5184 1 15059000 51742 14323 34920 35717 60177 60177 0.014478172911367437 RCAVHAARAHG 11 Unmodified _RCAVHAARAHG_ 0 0 0 ENST00000478597.5_1_9:140007734-140009165:-|nuORF ENST00000478597.5_1_9:140007734-140009165:-|nuORF ENST00000478597.5_1_9:140007734-140009165:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7962646484375 2 574.79634 1147.57813 NaN NaN NaN NaN NaN NaN NaN 3.2377 1 3.2254 2.7254 3.7254 -0.012334 0 0 0 0.9435 1 1642 1642 0 0 1 51743 14021 34921 35718 60178 60178 0.010241797341222991 RCCHWGAR 8 Unmodified _RCCHWGAR_ 0 0 0 REV__ENST00000394900.7_2_11:61105527-61106546:+|nuORF REV__ENST00000394900.7_2_11:61105527-61106546:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7211608886719 2 494.721255 987.427958 NaN NaN NaN NaN NaN NaN NaN 0.032772 1 0.032772 -0.46723 0.53277 0 0 0 0 0.97444 1 16 16 0 0 1 + 51744 26459 34922 35719 60179 60179 -0.06625883529159182 RCDCEGSQRS 10 Unmodified _RCDCEGSQRS_ 0 0 0 REV__ENST00000530702.1_2_11:10827534-10828858:-|nuORF REV__ENST00000530702.1_2_11:10827534-10828858:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8227844238281 3 380.822206 1139.44479 0.099899 3.8044E-05 2.3596 0.0008986 2.4595 0.00093664 380.82300998653955 39.525 0.28088 39.525 39.4 39.681 0 22 12 2 0 0 0 0.69917 1 21242 21242 1.4551 0 1 3365300 + 51745 28442 34923 35720 60180 60180 -0.1193547222453617 RCEFQRAKCKD 11 Unmodified _RCEFQRAKCKD_ 0 0 0 ENSG00000112562|ENST00000356284|SMOC2;nc|ENSG00000112562|Q9H3U7-2|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 ENSG00000112562|ENST00000356284|SMOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.3356323242188 2 692.334638 1382.65472 -0.017279 -1.1963E-05 0.294 0.00020355 0.27673 0.00019159 692.3349742791888 84.851 0.27901 84.851 84.651 84.93 0 23 13 2 0 0 0 0.73506 2 46955 46955;47052 0.96228 0.43751 1 488000 51746 2900 34924 35721 60181;60182 60181 -0.021298095515476234 RCEWDDQFSSC 11 Unmodified _RCEWDDQFSSC_ 0 0 0 REV__ENSG00000018869|ENST00000586929|ZNF582 REV__ENSG00000018869|ENST00000586929|ZNF582 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.1726989746094 3 459.172905 1374.49689 NaN NaN NaN NaN NaN NaN NaN 20.97 1 20.98 20.48 21.48 0.010553 0 0 0 0.94338 1 10713 10713 0.08335 0 1 + 51747 17098 34925 35722 60183 60183 -0.1753835360143512 RCFLMGSFLL 10 Unmodified _RCFLMGSFLL_ 0 0 0 REV__ENSG00000164187|ENST00000296603|LMBRD2 REV__ENSG00000164187|ENST00000296603|LMBRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.810302734375 2 593.809205 1185.60386 0.87171 0.00051763 1.3934 0.0008274 2.2651 0.001345 593.8098370765026 81.035 0.56541 80.543 80.271 80.837 -0.49247 97 32 4 0 0 0 0.27276 1 44404 44404 29.082 4.4077 1 19981000 + 51748 21889 34926 35723 60184 60184 0.01847893141575696 RCGKALGP 8 Unmodified _RCGKALGP_ 0 0 0 ENSG00000131899|ENST00000316843|LLGL1;ENST00000479155.1_1_17:18137242-18138852:+|nuORF ENSG00000131899|ENST00000316843|LLGL1 ENSG00000131899|ENST00000316843|LLGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2227478027344 2 401.223623 800.432692 0.061255 2.4577E-05 -1.9725 -0.00079141 -1.9112 -0.00076684 401.22292515211876 51.923 0.35108 51.864 51.632 51.983 -0.058918 28 16 2 0 0 0 0.80992 1 28099 28099 0.69038 0 1 2663900 51749 4358 34927 35724 60185 60185 0.024493238852414834 RCHHRRTL 8 Unmodified _RCHHRRTL_ 0 0 0 REV__ENSG00000166289|ENST00000436066|PLEKHF1 REV__ENSG00000166289|ENST00000436066|PLEKHF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1986389160156 3 360.198159 1077.57265 NaN NaN NaN NaN NaN NaN NaN 15.894 1 15.899 15.399 16.399 0.0050564 0 0 0 0.95607 1 7942 7942 6.7232 1.4263 1 + 51750 22102 34928 35725 60186 60186 0.03696500942351122 RCKKNNKAEL 10 Unmodified _RCKKNNKAEL_ 0 0 0 nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 nc|ENSG00000100888|Q9HCK8-2|CHD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8916625976562 3 401.892401 1202.65538 0.45389 0.00018242 0.32445 0.00013039 0.77834 0.00031281 401.8923698272578 17.153 0.15109 14.566 14.492 14.643 -2.5866 48 27 2 0 0 0 0.54684 1 8919 8919 8.4443 0.96724 1 4352800 51751 1884 34929 35726 60187 60187 0.06215353159814185 RCLCWLAFGL 10 Unmodified _RCLCWLAFGL_ 0 0 0 REV__ENST00000481883.1_1_21:47976701-47976983:+|nuORF REV__ENST00000481883.1_1_21:47976701-47976983:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8709106445312 3 394.53679 1180.58854 -0.0016451 -6.4905E-07 1.1752 0.00046367 1.1736 0.00046303 394.53731057434476 39.225 0.20754 38.939 38.812 39.02 -0.28687 20 9 3 0 0 0 0.66569 1 20667 20667 3.5871 0.26742 1 7283300 + 51752 27707 34930 35727 60188 60188 0.005470263443612566 RCLKYMAF 8 Unmodified _RCLKYMAF_ 0 0 0 nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2592163085938 2 516.26189 1030.50923 0.39345 0.00020313 -0.055939 -2.8879E-05 0.33752 0.00017425 516.2616360570223 88.291 0.39912 87.787 87.624 88.024 -0.50423 43 17 3 0 0 0 0.77907 1 48244 48244 10.183 10.183 1 4092500 51753 1035 34931 35728 60189 60189 -0.00480620609801008 RCPKGAGP 8 Unmodified _RCPKGAGP_ 0 0 0 REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2091369628906 2 393.207973 784.401392 0.09991 3.9285E-05 1.0727 0.00042178 1.1726 0.00046107 393.2086952399768 35.981 0.57421 35.981 35.776 36.35 0 41 28 2 0 0 0 0.80676 1 19156 19156 2.5775 1.7838 1 6597300 + 51754 26715 34932 35729 60190 60190 0.0005675085116081391 RCPKGAGP 8 Unmodified _RCPKGAGP_ 0 0 0 REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF REV__ENST00000411826.1_1_6:114383905-114384022:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2078857421875 2 393.207973 784.401392 -0.1099 -4.3212E-05 -0.15033 -5.9111E-05 -0.26023 -0.00010232 393.20803930057406 35.062 0.87032 35.09 34.713 35.583 0.027401 88 40 4 0 0 0 0.80992 1 18479 18479 0.69038 0 1 13005000 + 51755 26715 34932 35729 60191 60191 0.0005675085116081391 RCPPMRSWPI 10 Unmodified _RCPPMRSWPI_ 0 0 0 REV__ENSG00000066248|ENST00000264051|NGEF REV__ENSG00000066248|ENST00000264051|NGEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8789978027344 3 414.879327 1241.61615 -0.38048 -0.00015785 0.12839 5.3264E-05 -0.2521 -0.00010459 414.87853291504746 23.267 0.16553 23.267 23.202 23.367 0 11 7 2 0 0 0 0.70951 1 11876 11876 0.77653 0 1 379850 + 51756 17399 34933 35730 60192 60192 0.005009296045955125 RCRDDRSEMRL 11 Unmodified _RCRDDRSEMRL_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.9015197753906 3 479.56636 1435.67725 0.84452 0.000405 -1.1847 -0.00056812 -0.34014 -0.00016312 479.56584474573083 31.903 0.30737 28.207 28.086 28.394 -3.6958 25 16 2 0 0 0 0.67477 1 18121 18121 6.6235 0 1 15872000 + 51757 18501 34934 35731 60193 60193 -0.023162101539355717 RCRGKYVKG 9 Unmodified _RCRGKYVKG_ 0 0 0 REV__nc|ENSG00000116783|Q59H18-1|TNNI3K REV__nc|ENSG00000116783|Q59H18-1|TNNI3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2027282714844 3 356.202799 1065.58657 -0.0058279 -2.0759E-06 0.30344 0.00010808 0.29761 0.00010601 356.20298121621005 38.369 0.22181 38.386 38.239 38.46 0.01704 16 9 2 0 0 0 0.59218 1 20428 20428 0.96228 0.18574 1 1597800 + 51758 29590 34935 35732 60194 60194 0.05639733650764356 RCRLRLRFPL 10 Unmodified _RCRLRLRFPL_ 0 0 0 REV__ENST00000317173.8_1_8:9911825-9911984:+|nuORF REV__ENST00000317173.8_1_8:9911825-9911984:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.40771484375 2 665.406058 1328.79756 1.2471 0.00082983 2.1601 0.0014373 3.4072 0.0022671 665.4071984523197 105.03 0.13291 98.857 98.773 98.906 -6.1757 24 11 3 0 0 0 0.71123 1 70297 70297 1.6526 0 1 61877000 + 51759 25477 34936 35733 60195 60195 0.14631610692663344 RCRQNGRPF 9 Unmodified _RCRQNGRPF_ 0 0 0 REV__ENSG00000173714|ENST00000311378|WFIKKN2 REV__ENSG00000173714|ENST00000311378|WFIKKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5299987792969 3 378.529686 1132.56723 -0.037604 -1.4234E-05 -0.081034 -3.0674E-05 -0.11864 -4.4908E-05 378.52991297882403 29.896 0.2102 29.927 29.811 30.021 0.030106 14 7 3 0 0 0 0.54444 1 15634 15634 2.7352 0.64919 1 1600200 + 51760 22745 34937 35734 60196 60196 0.006247773598715867 RCRQYHRHLEY 11 Unmodified _RCRQYHRHLEY_ 0 0 0 ENST00000556883.1_1_14:93650687-93651102:-|nuORF ENST00000556883.1_1_14:93650687-93651102:-|nuORF ENST00000556883.1_1_14:93650687-93651102:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 780.8836059570312 2 780.883675 1559.7528 -0.006372 -4.9758E-06 -0.82047 -0.00064069 -0.82684 -0.00064567 780.8829794275192 86.442 0.31989 86.442 86.293 86.613 0 23 14 2 0 0 0 0.73115 1 47852 47852 1.3295 0 1 970990 51761 15248 34938 35735 60197 60197 -0.0046886491131772345 RCRRAGISAP 10 Unmodified _RCRRAGISAP_ 0 0 0 ENSG00000172315|ENST00000372114|TP53RK ENSG00000172315|ENST00000372114|TP53RK ENSG00000172315|ENST00000372114|TP53RK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8704833984375 3 362.86982 1085.58763 0.20392 7.3997E-05 1.1607 0.00042119 1.3646 0.00049519 362.8701316381242 39.323 1.2317 39.334 38.779 40.011 0.011452 76 58 2 0 0 0 0.71042 1 21117 21117 1.7423 0.14999 1 5459600 51762 8199 34939 35736 60198 60198 0.0482594801965206 RCRRRRRRRYC 11 Unmodified _RCRRRRRRRYC_ 0 0 0 ENST00000447274.6_1_11:67056466-67056871:+|nuORF ENST00000447274.6_1_11:67056466-67056871:+|nuORF ENST00000447274.6_1_11:67056466-67056871:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.3270874023438 3 546.30766 1635.90115 1.1466 0.00062642 0.71536 0.00039081 1.862 0.0010172 546.307417386783 97.849 0.22281 91.673 91.577 91.8 -6.1757 36 14 3 0 0 0 0.30605 1 64794 64794 0 0 1 31972000 51763 13478 34940 35737 60199 60199 0.10863587581388856 RCRSSVRWQKR 11 Unmodified _RCRSSVRWQKR_ 0 0 0 ENST00000357736.8_1_17:79877633-79877984:-|nuORF ENST00000357736.8_1_17:79877633-79877984:-|nuORF ENST00000357736.8_1_17:79877633-79877984:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.9374084472656 3 487.937116 1460.78952 NaN NaN NaN NaN NaN NaN NaN 24.12 1 21.292 20.792 21.792 -2.8273 0 0 0 0.94011 1 13106 13106 2.4348 0.35082 1 51764 12115 34941 35738 60200 60200 0.07755431705231786 RCRTDWFHQ 9 Unmodified _RCRTDWFHQ_ 0 0 0 REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF REV__ENST00000357155.1_1_1:109837903-109840046:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8607177734375 3 416.861213 1247.56181 0.43366 0.00018078 -0.54071 -0.0002254 -0.10704 -4.4622E-05 416.86100801613713 15.285 0.37799 12.758 12.617 12.995 -2.5273 164 71 3 0 0 0 0.58865 1 7750 7750 1.0715 0.3738 1 11413000 + 51765 25842 34942 35739 60201 60201 -0.05206946222597253 RCRYWWSR 8 Unmodified _RCRYWWSR_ 0 0 0 REV__ENST00000543885.2_1_18:44036595-44036901:+|nuORF REV__ENST00000543885.2_1_18:44036595-44036901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8645629882812 3 404.866298 1211.57707 NaN NaN NaN NaN NaN NaN NaN 18.598 1 18.621 18.121 19.121 0.023106 0 0 0 0.97444 1 9335 9335 0.40072 0 1 + 51766 28634 34943 35740 60202 60202 -0.020260346347868108 RCSAHPHSMTG 11 Unmodified _RCSAHPHSMTG_ 0 0 0 ENST00000567020.6_2_16:2552545-2553103:+|nuORF ENST00000567020.6_2_16:2552545-2553103:+|nuORF ENST00000567020.6_2_16:2552545-2553103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.1751403808594 3 395.174692 1182.50225 0.4714 0.00018629 0.78551 0.00031041 1.2569 0.0004967 395.1750479639445 49.37 0.14191 49.326 49.255 49.397 -0.04369 8 6 2 0 0 0 0.7187 1 26690 26690 1.0136 0 1 2149100 51767 15430 34944 35741 60203 60203 -0.08170585228322125 RCSRQKHVA 9 Unmodified _RCSRQKHVA_ 0 0 0 REV__ENST00000264042.7_1_2:242422896-242429387:+|nuORF REV__ENST00000264042.7_1_2:242422896-242429387:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5325622558594 3 362.197936 1083.57198 -0.08688 -3.1468E-05 1.3175 0.00047721 1.2306 0.00044574 362.19836161881256 45.146 0.23146 45.118 45.031 45.263 -0.028011 21 13 2 0 0 0 0.51218 1 24234 24234 4.1895 0 1 23864000 + 51768 25056 34945 35742 60204 60204 0.03353661502637806 RCSRSPRRF 9 Unmodified _RCSRSPRRF_ 0 0 0 REV__ENST00000606771.1_1_6:17706900-17707011:+|nuORF REV__ENST00000606771.1_1_6:17706900-17707011:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8756103515625 3 388.877086 1163.60943 -0.01125 -4.3747E-06 -0.5965 -0.00023197 -0.60775 -0.00023634 388.8767262003872 17.953 0.35761 17.959 17.826 18.183 0.0060463 46 24 2 0 0 0 0.57757 1 9039 9039 2.7352 2.7352 1 1580100 + 51769 29300 34946 35743 60205 60205 0.03416752768248443 RCSWLLPLRS 10 Unmodified _RCSWLLPLRS_ 0 0 0 ENST00000457668.1_1_2:60579119-60579293:-|nuORF ENST00000457668.1_1_2:60579119-60579293:-|nuORF ENST00000457668.1_1_2:60579119-60579293:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.844482421875 2 615.842425 1229.6703 0.57843 0.00035622 -2.0159 -0.0012415 -1.4374 -0.00088523 615.8425050237807 101.92 0.29567 95.748 95.644 95.939 -6.1757 24 14 3 0 0 0 0.71276 1 68432 68432 1.4819 0 1 4667800 51770 13616 34947 35744 60206 60206 0.06464845027812771 RCTFLHLTF 9 Unmodified _RCTFLHLTF_ 0 0 0 REV__ENST00000409790.5_2_16:11272691-11272832:+|nuORF REV__ENST00000409790.5_2_16:11272691-11272832:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.8670349121094 3 379.867305 1136.58008 NaN NaN NaN NaN NaN NaN NaN 47.64 1 42.406 41.906 42.906 -5.2339 0 0 0 0.6557 1 29587 29587 7.1017 1.8048 1 + 51771 26700 34948 35745 60207 60207 0.017257956993717016 RCTPLLGR 8 Unmodified _RCTPLLGR_ 0 0 0 REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF REV__ENST00000414990.2_3_7:143298660-143300142:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.74658203125 2 458.263279 914.512005 0.48996 0.00022453 -2.145 -0.00098296 -1.655 -0.00075843 458.26247912312687 72.212 0.23227 72.212 72.074 72.306 0 14 10 2 0 0 0 8.7369 1 40239 40239 2.0598 0 1 608860 + 51772 26751 34949 35746 60208 60208 0.05132970839383688 RCVQIAKR 8 Unmodified _RCVQIAKR_ 0 0 0 ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000472820.1_1_9:139568206-139571631:-|nuORF ENST00000472820.1_1_9:139568206-139571631:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2920532226562 2 487.289828 972.565103 NaN NaN NaN NaN NaN NaN NaN 109.64 1 103.47 102.97 103.97 -6.1757 0 0 0 0.97444 1 73214 73214 2.3027 0 1 51773 7901 34950 35747 60209 60209 0.07772348622063419 RCVRRRPL 8 Unmodified _RCVRRRPL_ 0 0 0 REV__ENST00000294484.6_2_1:11577566-11579522:+|nuORF REV__ENST00000294484.6_2_1:11577566-11579522:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5507507324219 3 352.550421 1054.62944 0.66611 0.00023484 1.0197 0.0003595 1.6858 0.00059433 352.5506865679341 57.551 0.5378 57.485 57.277 57.815 -0.066036 41 26 2 0 0 0 0.80859 1 31458 31458 1.4819 0 1 4286000 + 51774 25254 34951 35748 60210 60210 0.10430548498857206 RCWWRWPRCYW 11 Unmodified _RCWWRWPRCYW_ 0 0 0 ENST00000341500.9_1_19:7267817-7293934:-|nuORF ENST00000341500.9_1_19:7267817-7293934:-|nuORF ENST00000341500.9_1_19:7267817-7293934:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 849.3908081054688 2 849.390082 1696.76561 NaN NaN NaN NaN NaN NaN NaN 104.35 1 104.35 103.85 104.85 0 0 0 0 0.9435 1 57451 57451 0 0 1 51775 11967 34952 35749 60211 60211 -0.05490125052801886 RDAQVDLPMF 10 Unmodified _RDAQVDLPMF_ 0 0 0 REV__ENSG00000115414|ENST00000354785|FN1 REV__ENSG00000115414|ENST00000354785|FN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2955322265625 2 596.294973 1190.57539 NaN NaN NaN NaN NaN NaN NaN 65.126 1 65.126 64.626 65.626 0 0 0 0 0.97855 1 36330 36330 2.9952 0.41776 1 + 51776 18977 34953 35750 60212 60212 -0.012271332340560548 RDARPALE 8 Unmodified _RDARPALE_ 0 0 0 ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.253173828125 2 464.253966 926.493378 0.60292 0.00027991 -1.4235 -0.00066085 -0.82056 -0.00038095 464.2531243371956 84.109 0.37546 84.109 83.944 84.319 0 32 19 2 0 0 0 0.80992 1 46605 46605 0.69038 0 1 951210 51777 10148 34954 35751 60213 60213 0.02719132469167107 RDAYPGIY 8 Unmodified _RDAYPGIY_ 0 0 0 nc|ENSG00000205176|Q8IX06|REXO1L1P nc|ENSG00000205176|Q8IX06|REXO1L1P nc|ENSG00000205176|Q8IX06|REXO1L1P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7369079589844 2 477.737617 953.460681 -0.45334 -0.00021658 -0.3622 -0.00017304 -0.81554 -0.00038961 477.73723208971734 34.368 0.24726 34.368 34.175 34.422 0 20 12 2 0 0 0 0.6895 1 18077 18077 18.135 0 1 2219700 51778 16510 34955 35752 60214 60214 -0.01791074653681335 RDDELQVEEW 10 Unmodified _RDDELQVEEW_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2023315429688 3 440.201846 1317.58371 0.45789 0.00020156 -0.094214 -4.1473E-05 0.36368 0.00016009 440.20189712015457 85.98 0.27852 85.477 85.343 85.621 -0.50318 17 10 2 0 0 0 0.72247 1 47067 47067 0.13989 0 1 221480 + 51779 24074 34956 35753 60215 60215 -0.0623790778372495 RDDELQVEEW 10 Unmodified _RDDELQVEEW_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MSMS AL20221201_MKP_PDAC_01 4 659.8062133789062 2 659.799131 1317.58371 NaN NaN NaN NaN NaN NaN NaN 56.51 1 50.533 50.033 51.033 -5.9769 0 0 0 0.61997 1 36067 36067 20.415 2.0414 1 + 51780 24074 34956 35753 60216 60216 -0.0623790778372495 RDDVVKIT 8 Unmodified _RDDVVKIT_ 0 0 0 MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant;nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MBIP|p.I186Yfs*2|1|0.22|ENSG00000151332|chr14:36314528-36314529|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2711791992188 2 473.271824 944.529095 NaN NaN NaN NaN NaN NaN NaN 15.928 1 15.914 15.414 16.414 -0.014067 0 0 0 0.97444 1 7838 7838 0.6015 0 1 51781 6105 34957 35754 60217 60217 0.054611699261727153 RDECKYPKER 10 Unmodified _RDECKYPKER_ 0 0 0 REV__nc|ENSG00000182903|Q8TF20|ZNF721 REV__nc|ENSG00000182903|Q8TF20|ZNF721 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8865356445312 3 441.887316 1322.64012 0.40333 0.00017822 -1.729 -0.00076403 -1.3257 -0.00058581 441.88648950481127 80.267 0.50553 80.324 80.282 80.788 0.057587 29 22 2 0 0 0 0.56348 1 44483 44483 7.9454 3.5392 1 18419000 + 51782 23306 34958 35755 60218 60218 -0.008295584280631374 RDEDSSEEDSD 11 Unmodified _RDEDSSEEDSD_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.2291259765625 2 642.228933 1282.44331 NaN NaN NaN NaN NaN NaN NaN 13.61 1 13.61 13.11 14.11 0 0 0 0 0.9435 1 6440 6440 0 0 1 51783 7709 34959 35756 60219 60219 -0.18661156298594506 RDEEQCQMGA 10 Unmodified _RDEEQCQMGA_ 0 0 0 ENST00000486707.5_2_1:151733957-151734956:-|nuORF ENST00000486707.5_2_1:151733957-151734956:-|nuORF ENST00000486707.5_2_1:151733957-151734956:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.4906005859375 3 389.490345 1165.44921 0.46575 0.0001814 0.83745 0.00032618 1.3032 0.00050758 389.4905834044836 60.342 0.31401 60.342 60.137 60.451 0 24 13 2 0 0 0 0.6966 1 33623 33623 1.5923 0 1 1826800 51784 14186 34960 35757 60220 60220 -0.12690007801620595 RDEHIYPYMY 10 Unmodified _RDEHIYPYMY_ 0 0 0 nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1 nc|ENSG00000133895|O00255-3|MEN1 nc|ENSG00000133895|O00255-3|MEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.8756103515625 3 462.876417 1385.60742 0.093862 4.3447E-05 -2.1159 -0.0009794 -2.022 -0.00093596 463.2099353890637 20.094 0.2874 20.094 20.039 20.326 0 27 22 2 0 0 0 0.72196 1 10106 10106 0.15932 0 1 517900 51785 4541 34961 35758 60221 60221 -0.0699576555089152 RDENDTIPSVD 11 Unmodified _RDENDTIPSVD_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1;nc|ENSG00000095951|P15822-2|HIVEP1;nc|ENSG00000095951|P15822-3|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7872924804688 2 630.788763 1259.56297 NaN NaN NaN NaN NaN NaN NaN 25.537 1 25.537 25.037 26.037 0 0 0 0 0.94184 1 13095 13095 1.1933 0.66858 1 51786 1664 34962 35759 60222 60222 -0.056424981633881544 RDEPKHAWCQ 10 Unmodified _RDEPKHAWCQ_ 0 0 0 REV__nc|ENSG00000061938|Q07912-2|TNK2 REV__nc|ENSG00000061938|Q07912-2|TNK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.8641052246094 3 423.864623 1268.57204 -0.43475 -0.00018428 -0.95206 -0.00040354 -1.3868 -0.00058782 423.86420366730863 20.433 0.20533 20.433 20.42 20.625 0 34 24 2 0 0 0 0.71535 1 10280 10280 0.50596 0 1 1741600 + 51787 17336 34963 35760 60223 60223 -0.05150383288037119 RDESIEEHHF 10 Unmodified _RDESIEEHHF_ 0 0 0 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.5299987792969 3 433.530186 1297.56873 1.1653 0.00050519 -0.59624 -0.00025849 0.56906 0.00024671 433.5297848372036 93.895 0.30661 87.719 87.555 87.862 -6.1757 27 17 2 0 0 0 0.67033 1 62170 62170 3.3196 0 1 5788300 51788 1066 34964 35761 60224 60224 -0.06815354861055312 RDFETRID 8 Unmodified _RDFETRID_ 0 0 0 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7437744140625 2 526.261988 1050.50942 0.37796 0.00019891 -2.8406 -0.0014949 -2.4627 -0.001296 526.2605497626857 87.737 0.13089 87.233 87.177 87.308 -0.50423 8 5 2 0 0 0 8.7369 1 48024 48024 12.532 3.1841 1 277200 + 51789 21335 34965 35762 60225 60225 -0.013812060845793894 RDFNDNPPSF 10 Unmodified _RDFNDNPPSF_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5152282714844 3 403.515877 1207.5258 NaN NaN NaN NaN NaN NaN NaN 42.993 1 42.682 42.182 43.182 -0.31039 0 0 0 0.96981 1 22857 22857 1.9064 0 1 51790 9772 34966 35763 60226 60226 -0.06966124918494643 RDGNRDRNR 9 Unmodified _RDGNRDRNR_ 0 0 0 ENSG00000140832|ENST00000268485|MARVELD3;nc|ENSG00000140832|Q96A59-3|MARVELD3;nc|ENSG00000140832|Q96A59-2|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.795654296875 2 579.795383 1157.57621 0.35054 0.00020324 -0.0020853 -1.209E-06 0.34845 0.00020203 579.7955713854349 101.06 0.080193 100.92 100.88 100.96 -0.13293 4 2 2 0 0 0 0.62242 1 55173 55173 0 0 1 837250 51791 5273 34967 35764 60227 60227 0.00372842249862515 RDGQVLGRRSF 11 Unmodified _RDGQVLGRRSF_ 0 0 0 nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-12|TP73 nc|ENSG00000078900|O15350-12|TP73 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.5718994140625 3 430.905698 1289.69527 0.58122 0.00025045 -0.15856 -6.8323E-05 0.42266 0.00018213 430.9055574030058 42.655 0.36457 42.646 42.381 42.745 -0.0088196 41 16 4 0 0 0 0.28844 1 22804 22804 16.275 10.04 1 44920000 51792 1258 34968 35765 60228 60228 0.062006161547287775 RDHLVKFF 8 Unmodified _RDHLVKFF_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.3219604492188 2 531.298176 1060.5818 1.0648 0.00056575 -0.59209 -0.00031458 0.47276 0.00025117 531.7997711790263 60.624 0.52492 54.476 54.142 54.667 -6.1478 42 27 2 0 0 0 8.7369 1 38825 38825 14.582 5.2343 1 17778000 + 51793 17961 34969 35766 60229 60229 0.05393172779668021 RDHVCKAY 8 Unmodified _RDHVCKAY_ 0 0 0 REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF REV__ENST00000445636.1_1_13:50935548-50935701:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7615966796875 2 496.242544 990.470534 -0.42746 -0.00021212 -2.6688 -0.0013244 -3.0963 -0.0015365 496.24167258565876 34.756 0.1745 34.756 34.636 34.81 0 11 8 2 0 0 0 8.7369 1 18273 18273 8.5933 0.68312 1 956670 + 51794 27134 34970 35767 60230 60230 -0.025082099199494223 RDIAPQAVL 9 Unmodified _RDIAPQAVL_ 0 0 0 ENST00000523167.1_1_8:101300446-101321650:-|nuORF ENST00000523167.1_1_8:101300446-101321650:-|nuORF ENST00000523167.1_1_8:101300446-101321650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7879943847656 2 491.787641 981.56073 0.1294 6.3638E-05 0.65829 0.00032374 0.78769 0.00038738 491.7881057216634 37.608 0.19219 37.608 37.51 37.702 0 17 9 2 0 0 0 0.40476 1 20052 20052 12.241 0 1 1651700 51795 14764 34971 35768 60231 60231 0.06921162680123416 RDIDIILNRRN 11 Unmodified _RDIDIILNRRN_ 0 0 0 nc|ENSG00000290798|Q9H1B4-3|NXF5;nc|ENSG00000290798|Q9H1B4-5|NXF5;nc|ENSG00000290798|Q9H1B4-4|NXF5;nc|ENSG00000290798|Q9H1B4-6|NXF5;nc|ENSG00000290798|Q9H1B4-2|NXF5;nc|ENSG00000290798|Q9H1B4|NXF5;ENSG00000269437|ENST00000602195|NXF2B;ENSG00000269405|ENST00000625106|NXF2 nc|ENSG00000290798|Q9H1B4-3|NXF5 nc|ENSG00000290798|Q9H1B4-3|NXF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.205322265625 4 350.20475 1396.78989 0.41931 0.00014685 0.24544 8.5956E-05 0.66476 0.0002328 350.20502900742053 49.368 0.50904 49.324 48.927 49.436 -0.04369 33 24 2 0 0 0 0.306 1 26716 26716 0.45452 0 1 1250200 51796 10880 34972 35769 60232 60232 0.10737129906101472 RDINKQAAR 9 Unmodified _RDINKQAAR_ 0 0 0 REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5385131835938 3 357.872106 1070.59449 -0.28988 -0.00010374 2.5618 0.0009168 2.2719 0.00081306 357.87295017431086 41.554 0.21781 41.553 41.422 41.64 -0.0017929 15 9 2 0 0 0 0.21473 1 22219 22219 0.96228 0 1 3704800 + 51797 17853 34973 35770 60233 60233 0.062015841718903175 RDKLGIPWQYS 11 Unmodified _RDKLGIPWQYS_ 0 0 0 nc|ENSG00000146535|Q03113-3|GNA12;nc|ENSG00000146535|Q03113-2|GNA12;ENSG00000146535|ENST00000275364|GNA12 nc|ENSG00000146535|Q03113-3|GNA12 nc|ENSG00000146535|Q03113-3|GNA12 MSMS AL20221201_MKP_PDAC_01 4 454.7874755859375 3 454.910338 1361.70918 NaN NaN NaN NaN NaN NaN NaN 36.523 1 32.24 31.74 32.74 -4.2835 0 0 0 0.73356 1 21336 21336 12.228 0.59622 1 51798 5786 34974 35771 60234 60234 0.042798488631888176 RDKMRKWREEN 11 Unmodified _RDKMRKWREEN_ 0 0 0 ENSG00000104412|ENST00000220853|EMC2;ENST00000517593.5_1_8:109455866-109468189:+|nuORF ENSG00000104412|ENST00000220853|EMC2 ENSG00000104412|ENST00000220853|EMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 774.3947143554688 2 774.396615 1546.77868 -0.1651 -0.00012785 -1.2345 -0.00095597 -1.3996 -0.0010838 774.3953202900447 31.649 0.24294 31.52 31.38 31.623 -0.12915 25 9 4 0 0 0 0.72309 1 16436 16436 2.086 0.89267 1 8126600 51799 2204 34975 35772 60235 60235 0.027159845403048166 RDKQNRQL 8 Unmodified _RDKQNRQL_ 0 0 0 REV__ENSG00000083290|ENST00000395544|ULK2 REV__ENSG00000083290|ENST00000395544|ULK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2976684570312 2 529.296696 1056.57884 NaN NaN NaN NaN NaN NaN NaN 21.045 1 21.055 20.555 21.555 0.010553 0 0 0 0.97444 1 10754 10754 0.69038 0.16561 1 + 51800 17716 34976 35773 60236 60236 0.052812976548466395 RDLPPAPPA 9 Unmodified _RDLPPAPPA_ 0 0 0 ENST00000204517.10_1_16:4322791-4323031:-|nuORF ENST00000204517.10_1_16:4322791-4323031:-|nuORF ENST00000204517.10_1_16:4322791-4323031:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2602844238281 2 467.261259 932.507966 -0.10136 -4.7362E-05 -1.7249 -0.00080598 -1.8263 -0.00085334 467.26039707727796 29.745 0.13103 29.745 29.662 29.793 0 10 6 2 0 0 0 0.30562 1 15429 15429 16.942 1.0951 1 2025300 51801 10987 34977 35774 60237 60237 0.03901204617318399 RDLPQKKK 8 Unmodified _RDLPQKKK_ 0 0 0 ENSG00000141371|ENST00000269127|CHCT1 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.0968017578125 2 506.816733 1011.61891 0.77283 0.00039168 -0.84553 -0.00042853 -0.072697 -3.6844E-05 506.81631981860494 34.608 0.42317 30.513 30.348 30.771 -4.0951 41 22 2 0 0 0 8.7369 1 19876 19876 4.3292 3.7277 1 14747000 + 51802 17684 34978 35775 60238 60238 0.11356844325405291 RDLPRETVL 9 Unmodified _RDLPRETVL_ 0 0 0 REV__ENSG00000081818|ENST00000194152|PCDHB4 REV__ENSG00000081818|ENST00000194152|PCDHB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8806762695312 3 366.880379 1097.61931 1.832 0.00067211 -0.97732 -0.00035856 0.85464 0.00031355 366.88001477133366 21.452 0.41571 18.717 18.485 18.9 -2.7348 84 36 3 0 0 0 0.32871 1 11497 11497 20.415 3.8487 1 13517000 + 51803 17697 34979 35776 60239 60239 0.07440219254613112 RDLRMKAEDY 10 Unmodified _RDLRMKAEDY_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MSMS AL20221201_MKP_PDAC_01 4 432.88623046875 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 45.929 1 40.974 40.474 41.474 -4.9549 0 0 0 0.95639 1 28284 28284 5.4027 1.5264 1 51804 967 34980 35777 60240 60240 -0.006769608023205365 RDLSSGTM 8 Unmodified _RDLSSGTM_ 0 0 0 ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 433.7352294921875 2 433.70546 865.396366 1.3456 0.00058361 -0.0093183 -4.0414E-06 1.3363 0.00057957 433.70588385864664 37.554 0.31539 33.271 33.072 33.387 -4.2835 34 18 3 0 0 0 8.7369 1 21921 21921 7.2892 0 1 11603000 51805 9865 34981 35778 60241 60241 -0.04171597802121596 RDPDSGADL 9 Unmodified _RDPDSGADL_ 0 0 0 ENST00000593158.1_1_17:27209636-27224592:-|nuORF ENST00000593158.1_1_17:27209636-27224592:-|nuORF ENST00000593158.1_1_17:27209636-27224592:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2167358398438 2 473.217246 944.419939 NaN NaN NaN NaN NaN NaN NaN 70.433 1 69.955 69.455 70.455 -0.47823 0 0 0 0.83049 1 38522 38522 3.9444 1.0552 1 51806 15732 34982 35779 60242 60242 -0.054494607639526293 RDPNLIHYF 9 Unmodified _RDPNLIHYF_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8054809570312 2 587.803823 1173.59309 1.0298 0.00060532 -0.49018 -0.00028813 0.53962 0.00031719 587.804163782376 19.872 0.2557 17.216 17.149 17.404 -2.6564 22 14 2 0 0 0 0.59218 1 10649 10649 1.8442 0.19162 1 1518700 + 51807 17726 34983 35780 60243 60243 0.013239500831332407 RDPNLIHYFL 10 Unmodified _RDPNLIHYFL_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.3453369140625 2 644.345855 1286.67716 -0.31142 -0.00020066 0.85366 0.00055005 0.54224 0.00034939 644.3469370941356 37.455 0.16348 37.183 37.067 37.23 -0.27133 12 6 2 0 0 0 0.71042 1 19684 19684 1.4819 0.15237 1 786920 + 51808 17726 34984 35781 60244 60244 0.04528481180045674 RDQRRLKKV 9 Unmodified _RDQRRLKKV_ 0 0 0 ENST00000380637.7_1_21:40834409-40883616:+|nuORF ENST00000380637.7_1_21:40834409-40883616:+|nuORF ENST00000380637.7_1_21:40834409-40883616:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.1945190429688 3 400.254551 1197.74182 NaN NaN NaN NaN NaN NaN NaN 23.57 1 23.57 23.07 24.07 0 0 0 0 0.86054 1 12018 12018 0.20686 0.047535 1 51809 12602 34985 35782 60245 60245 0.15086100776693456 RDRAPLEVSR 10 Unmodified _RDRAPLEVSR_ 0 0 0 ENST00000574828.1_1_17:80584850-80606216:-|nuORF ENST00000574828.1_1_17:80584850-80606216:-|nuORF ENST00000574828.1_1_17:80584850-80606216:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.2281799316406 3 400.226549 1197.65782 NaN NaN NaN NaN NaN NaN NaN 20.221 1 17.528 17.028 18.028 -2.693 0 0 0 0.43781 1 10763 10763 29.281 3.2604 1 51810 15510 34986 35783 60246 60246 0.06689524889134191 RDRCLPGGFFD 11 Unmodified _RDRCLPGGFFD_ 0 0 0 REV__ENST00000324288.12_1_16:11021589-11021871:+|nuORF REV__ENST00000324288.12_1_16:11021589-11021871:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.2049560546875 3 428.204757 1281.59244 NaN NaN NaN NaN NaN NaN NaN 15.744 1 13.216 12.716 13.716 -2.5273 0 0 0 0.93669 1 8105 8105 2.2527 0.51045 1 + 51811 25532 34987 35784 60247 60247 -0.03709212628223213 RDRDRHQRD 9 Unmodified _RDRDRHQRD_ 0 0 0 REV__ENSG00000158545|ENST00000301011|ZC3H18 REV__ENSG00000158545|ENST00000301011|ZC3H18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2071533203125 3 418.545052 1252.61333 0.032154 1.3458E-05 -0.13709 -5.738E-05 -0.10494 -4.3922E-05 418.87951244890917 19.968 0.29474 19.976 19.855 20.15 0.0078506 32 14 3 0 0 0 0.21834 1 10124 10124 0.96228 0 1 927010 + 51812 21436 34988 35785 60248 60248 -0.0028748620436545025 RDREGERDRER 11 Unmodified _RDREGERDRER_ 0 0 0 ENST00000579009.1_1_17:16842557-16842860:-|nuORF ENST00000579009.1_1_17:16842557-16842860:-|nuORF ENST00000579009.1_1_17:16842557-16842860:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.1755676269531 4 369.187089 1472.71925 0.76533 0.00028255 1.2979 0.00047915 2.0632 0.0007617 369.18770565725885 23.457 0.25317 20.661 20.568 20.822 -2.7963 31 14 3 0 0 0 0.30575 1 12790 12790 0.84494 0.43668 1 2741100 51813 15547 34989 35786 60249 60249 0.0017980485047246475 RDREMFGYM 9 Unmodified _RDREMFGYM_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1936645507812 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 8.1791 1 8.1967 7.6967 8.6967 0.017581 0 0 0 0.85737 1 4075 4075 0.26902 0 1 51814 6109 34990 35787 60250 60250 -0.07711932800020804 RDRLAMYDVA 10 Unmodified _RDRLAMYDVA_ 0 0 0 nc|ENSG00000187045|Q8IU80-2|TMPRSS6;ENSG00000187045|ENST00000676104|TMPRSS6;nc|ENSG00000187045|Q8IU80|TMPRSS6;nc|ENSG00000187045|Q8IU80-5|TMPRSS6 nc|ENSG00000187045|Q8IU80-2|TMPRSS6 nc|ENSG00000187045|Q8IU80-2|TMPRSS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.8763122558594 3 403.873007 1208.59719 -0.067997 -2.7462E-05 4.3102 0.0017408 4.2422 0.0017133 403.87567762679197 25.688 0.14663 22.737 22.625 22.772 -2.9511 10 7 2 0 0 0 0.67033 1 14089 14089 3.3196 0.24738 1 4544200 51815 9530 34991 35788 60251 60251 0.0012367151452963299 RDRLLLLG 8 Unmodified _RDRLLLLG_ 0 0 0 nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91 nc|ENSG00000105875|A4D1P6-2|WDR91 nc|ENSG00000105875|A4D1P6-2|WDR91 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3067016601562 2 478.306001 954.597449 1.268 0.00060651 0.10352 4.9515E-05 1.3716 0.00065602 478.3058417233279 102.61 0.25818 96.43 96.298 96.556 -6.1757 79 46 2 0 0 0 0.80975 1 68799 68799 0.79363 0 1 10321000 51816 2374 34992 35789 60252 60252 0.11833459296713045 RDRPFGGT 8 Unmodified _RDRPFGGT_ 0 0 0 REV__ENST00000461256.5_1_2:42795323-42836639:+|nuORF REV__ENST00000461256.5_1_2:42795323-42836639:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4602661132812 1 905.45879 904.451513 0.014239 1.2893E-05 0.44755 0.00040524 0.46179 0.00041813 905.4593765392463 62.619 0.26806 62.619 62.506 62.774 0 16 11 2 0 0 0 0.80992 1 34947 34947 0.69038 0 1 397460 + 51817 27314 34993 35790 60253 60253 -0.004534232193350363 RDRQEWERQ 9 Unmodified _RDRQEWERQ_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825988769531 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 93.524 1 93.524 93.024 94.024 0 0 0 0 0.85798 1 51705 51705 0.23584 0 1 51818 7773 34994 35791 60254 60254 -0.01625137638666274 RDRRPPKGM 9 Unmodified _RDRRPPKGM_ 0 0 0 REV__ENST00000586954.1_1_19:28268253-28268367:-|nuORF REV__ENST00000586954.1_1_19:28268253-28268367:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5425415039062 3 371.541703 1111.60328 0.76608 0.00028463 1.2188 0.00045283 1.9849 0.00073746 371.5420213242218 47.326 0.46074 47.287 47.1 47.561 -0.038643 46 21 3 0 0 0 0.57757 1 25576 25576 2.7352 2.7352 1 68617000 + 51819 29115 34995 35792 60255 60255 0.05194234536725162 RDRWLHRY 8 Unmodified _RDRWLHRY_ 0 0 0 REV__ENSG00000213906|ENST00000533293|LTB4R2 REV__ENSG00000213906|ENST00000533293|LTB4R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.3203125 2 601.320506 1200.62646 NaN NaN NaN NaN NaN NaN NaN 80.782 1 80.782 80.282 81.282 0 0 0 0 0.97444 1 44850 44850 0.79363 0 1 + 51820 24297 34996 35793 60256 60256 0.03416996645682957 RDSAYQYLFK 10 Unmodified _RDSAYQYLFK_ 0 0 0 REV__ENST00000326361.7_2_3:179051453-179051519:+|nuORF REV__ENST00000326361.7_2_3:179051453-179051519:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8879699707031 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 15.879 1 13.322 12.822 13.822 -2.557 0 0 0 0.97592 1 8185 8185 1.5923 0 1 + 51821 25558 34997 35794 60257 60257 0.007201845634426718 RDVDPGEHY 9 Unmodified _RDVDPGEHY_ 0 0 0 nc|ENSG00000118520|P05089-3|ARG1;ENSG00000118520|ENST00000368087|ARG1;nc|ENSG00000118520|P05089-2|ARG1 nc|ENSG00000118520|P05089-3|ARG1 nc|ENSG00000118520|P05089-3|ARG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.246826171875 2 544.243795 1086.47304 0.068818 3.7454E-05 0.43207 0.00023515 0.50089 0.0002726 544.2440905013551 17.572 0.10483 17.577 17.516 17.621 0.0050564 15 10 2 0 0 0 0.45045 1 8852 8852 10.074 2.465 1 688040 51822 3379 34998 35795 60258 60258 -0.06674082981294305 RDWSTWKLHHF 11 Unmodified _RDWSTWKLHHF_ 0 0 0 REV__ENSG00000182179|ENST00000333486|UBA7 REV__ENSG00000182179|ENST00000333486|UBA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 756.8756103515625 2 756.878385 1511.74222 NaN NaN NaN NaN NaN NaN NaN 92.456 1 91.975 91.475 92.475 -0.48092 0 0 0 0.94301 1 50532 50532 0.35063 0.043601 1 + 51823 23249 34999 35796 60259 60259 0.006814757058691612 REAGSGSK 8 Unmodified _REAGSGSK_ 0 0 0 ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 MSMS AL20221201_MKP_PDAC_01 4 396.2022399902344 2 396.203941 790.39333 NaN NaN NaN NaN NaN NaN NaN 17.334 1 14.748 14.248 15.248 -2.5866 0 0 0 0.97444 1 9055 9055 4.3292 1.44 1 51824 6988 35000 35797 60260 60260 -0.010251048646182426 REALSIHVF 9 Unmodified _REALSIHVF_ 0 0 0 nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8695373535156 3 357.869703 1070.58728 -0.31278 -0.00011193 0.017645 6.3147E-06 -0.29514 -0.00010562 357.86970608836225 34.711 0.17178 34.52 34.46 34.631 -0.19131 11 7 2 0 0 0 0.57331 1 18191 18191 2.9952 2.9952 1 2449800 51825 1610 35001 35798 60261 60261 0.054808515714512396 REANAGNLKP 10 Unmodified _REANAGNLKP_ 0 0 0 nc|ENSG00000163832|Q0PNE2-2|ELP6;ENSG00000163832|ENST00000296149|ELP6 nc|ENSG00000163832|Q0PNE2-2|ELP6 nc|ENSG00000163832|Q0PNE2-2|ELP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.1967163085938 3 357.196478 1068.56761 NaN NaN NaN NaN NaN NaN NaN 88.828 1 88.876 88.376 89.376 0.047852 0 0 0 0.97592 1 49420 49420 1.5923 0.52082 1 51826 7081 35002 35799 60262 60262 0.03606475560695799 RECASFLQHC 10 Unmodified _RECASFLQHC_ 0 0 0 REV__ENST00000274203.13_1_5:16936162-16936204:-|nuORF REV__ENST00000274203.13_1_5:16936162-16936204:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5121765136719 3 398.511192 1192.51175 NaN NaN NaN NaN NaN NaN NaN 68.687 1 68.206 67.706 68.706 -0.48071 0 0 0 0.99091 1 37543 37543 0.69767 0.24315 1 + 51827 25164 35003 35800 60263 60263 -0.07680816942752244 RECPSVLEY 9 Carbamidomethyl (C) _REC(Carbamidomethyl (C))PSVLEY_ REC(1)PSVLEY REC(79)PSVLEY 0 1 0 ENSG00000135069|ENST00000376588|PSAT1;nc|ENSG00000135069|Q9Y617-2|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.771484375 2 576.771331 1151.52811 0.50572 0.00029169 -0.43255 -0.00024948 0.073174 4.2204E-05 576.7713978329084 45.148 0.40763 40.296 40.007 40.414 -4.852 57 26 3 0 0 0 0.010611 1 27659 27659 78.728 34.87 1 22937000 51828 4666 35004 35801 60264 60264 477 -0.04159412505032378 REDFATTY 8 Unmodified _REDFATTY_ 0 0 0 nc|ENSG00000174348|Q7Z5L7-4|PODN;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN nc|ENSG00000174348|Q7Z5L7-4|PODN nc|ENSG00000174348|Q7Z5L7-4|PODN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7286376953125 2 501.729989 1001.44543 -0.20533 -0.00010302 -1.0964 -0.00055009 -1.3017 -0.00065311 501.7295157076929 28.785 0.21995 28.785 28.683 28.903 0 17 10 2 0 0 0 0.57045 1 14907 14907 28.487 0 1 1529600 51829 8413 35005 35802 60265 60265 -0.05523986241530565 REDFATTY 8 Unmodified _REDFATTY_ 0 0 0 nc|ENSG00000174348|Q7Z5L7-4|PODN;ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN nc|ENSG00000174348|Q7Z5L7-4|PODN nc|ENSG00000174348|Q7Z5L7-4|PODN MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7311096191406 2 501.729989 1001.44543 1.5272 0.00076624 -0.036397 -1.8261E-05 1.4908 0.00074798 501.73007624866085 33.907 0.48958 29.921 29.643 30.133 -3.9853 66 26 3 0 0 0 0.57045 2 19375 19375;19497 28.487 5.3384 1 38368000 51830 8413 35005 35802 60266;60267 60266 -0.05523986241530565 REDIEREWRWA 11 Unmodified _REDIEREWRWA_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 773.3875732421875 2 773.381488 1544.74842 -0.0050192 -3.8818E-06 2.4671 0.001908 2.4621 0.0019042 773.8840660358726 93.029 0.16116 93.029 92.92 93.081 0 13 9 2 0 0 0 0.73506 1 51428 51428 0.96228 0.65524 1 438210 + 51831 18989 35006 35803 60268 60268 -0.002160508532597305 REDIEREWRWA 11 Unmodified _REDIEREWRWA_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.8983764648438 2 773.381488 1544.74842 NaN NaN NaN NaN NaN NaN NaN 97.463 1 97.221 96.721 97.721 -0.24277 0 0 0 0.94216 1 53219 53219 0.96228 0.65524 1 + 51832 18989 35006 35803 60269 60269 -0.002160508532597305 REDLLAEEE 9 Unmodified _REDLLAEEE_ 0 0 0 nc|ENSG00000006283|O43497-5|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G nc|ENSG00000006283|O43497-5|CACNA1G nc|ENSG00000006283|O43497-5|CACNA1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5110168457031 3 368.512021 1102.51423 NaN NaN NaN NaN NaN NaN NaN 21.229 1 21.229 20.729 21.729 0 0 0 0 0.84021 1 10727 10727 2.7352 2.2292 1 51833 16011 35007 35804 60270 60270 -0.032923667324666894 REDLNDIFVNY 11 Unmodified _REDLNDIFVNY_ 0 0 0 REV__ENST00000462786.1_1_X:48564870-48565958:+|nuORF REV__ENST00000462786.1_1_X:48564870-48565958:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3408203125 2 699.338424 1396.66229 -0.30018 -0.00020993 -1.1364 -0.00079474 -1.4366 -0.0010047 699.3378048262059 51.412 1.1286 50.999 50.661 51.79 -0.41351 197 58 7 0 0 0 0.70069 1 27524 27524 4.1895 1.4543 1 6733799999.999999 + 51834 18206 35008 35805 60271 60271 -0.02017055478609109 REEDELLAL 9 Unmodified _REEDELLAL_ 0 0 0 REV__ENSG00000117868|ENST00000275418|ESYT2 REV__ENSG00000117868|ENST00000275418|ESYT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2865600585938 2 544.285128 1086.5557 0.13299 7.2386E-05 0.59107 0.00032171 0.72406 0.0003941 544.2876410919142 97.176 0.48816 96.933 96.706 97.194 -0.24277 50 21 3 0 0 0 0.43463 1 53001 53001 10.824 1.4765 1 1373800 + 51835 19127 35009 35806 60272 60272 0.015888140268543793 REEDKESDQ 9 Unmodified _REEDKESDQ_ 0 0 0 REV__ENST00000230461.10_1_6:75965301-75965511:-|nuORF REV__ENST00000230461.10_1_6:75965301-75965511:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.83935546875 3 379.166913 1134.47891 -0.52549 -0.00019925 -3.9592 -0.0015012 -4.4847 -0.0017005 379.16506813149914 26.245 0.14791 26.245 26.175 26.323 0 10 7 2 0 0 0 0.21874 1 13459 13459 1.1933 0.41681 1 513500 + 51836 24812 35010 35807 60273 60273 -0.08295029260284537 REEEDMEEEEN 11 Unmodified _REEEDMEEEEN_ 0 0 0 ENST00000488249.1_1_7:127975899-127977248:-|nuORF;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28 ENST00000488249.1_1_7:127975899-127977248:-|nuORF ENST00000488249.1_1_7:127975899-127977248:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.1807861328125 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 13.325 1 13.325 12.825 13.825 0 0 0 0 0.9435 1 6306 6306 0 0 1 51837 2419 35011 35808 60274 60274 -0.18107681073752246 REEEDMEEEEN 11 Unmodified _REEEDMEEEEN_ 0 0 0 ENST00000488249.1_1_7:127975899-127977248:-|nuORF;nc|ENSG00000106344|Q9NW13-2|RBM28;ENSG00000106344|ENST00000223073|RBM28 ENST00000488249.1_1_7:127975899-127977248:-|nuORF ENST00000488249.1_1_7:127975899-127977248:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.1804504394531 3 480.180671 1437.52018 NaN NaN NaN NaN NaN NaN NaN 1.122 1 1.0487 0.54875 1.5487 -0.07329 0 0 0 0.9435 1 564 564 0 0 1 51838 2419 35011 35808 60275 60275 -0.18107681073752246 REEHCRLFDWI 11 Unmodified _REEHCRLFDWI_ 0 0 0 REV__ENST00000409658.7_1_2:128520603-128520774:-|nuORF REV__ENST00000409658.7_1_2:128520603-128520774:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.9145812988281 3 501.910232 1502.70887 NaN NaN NaN NaN NaN NaN NaN 19.065 1 19.065 18.565 19.565 0 0 0 0 0.94307 1 9515 9515 0.08335 0 1 + 51839 20174 35012 35809 60276 60276 -0.022378941283250242 REENWQEWRQR 11 Unmodified _REENWQEWRQR_ 0 0 0 nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.8878784179688 2 808.887469 1615.76039 NaN NaN NaN NaN NaN NaN NaN 84.093 1 84.093 83.593 84.593 0 0 0 0 0.9434 1 46626 46626 0.26902 0 1 51840 7293 35013 35810 60277 60277 -0.022864341100785168 REENWQEWRQR 11 Unmodified _REENWQEWRQR_ 0 0 0 nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.8869018554688 2 808.887469 1615.76039 NaN NaN NaN NaN NaN NaN NaN 86.595 1 86.595 86.095 87.095 0 0 0 0 0.9435 1 47963 47963 0 0 1 51841 7293 35013 35810 60278 60278 -0.022864341100785168 REENWQEWRQR 11 Unmodified _REENWQEWRQR_ 0 0 0 nc|ENSG00000165113|Q5VSY0-2|GKAP1;ENSG00000165113|ENST00000376371|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 nc|ENSG00000165113|Q5VSY0-2|GKAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7884521484375 3 539.594072 1615.76039 0.28318 0.0001528 -1.7943 -0.00096818 -1.5111 -0.00081538 539.9273519345925 55.032 0.14059 54.963 54.878 55.019 -0.068741 8 6 2 0 0 0 0.30602 1 29906 29906 0.32927 0.23443 1 1560700 51842 7293 35013 35810 60279 60279 -0.022864341100785168 REERRQREHTR 11 Unmodified _REERRQREHTR_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 777.4116821289062 2 776.91181 1551.80907 0.7406 0.00057538 -2.5372 -0.0019712 -1.7966 -0.0013958 777.411283193694 56.816 0.21825 56.747 56.638 56.857 -0.068741 13 10 2 0 0 0 0.7326 1 30913 30913 1.1933 0 1 1423500 51843 9690 35014 35811 60280 60280 0.055234792496548835 REESHPLDCRR 11 Unmodified _REESHPLDCRR_ 0 0 0 REV__ENST00000425350.1_1_13:49151796-49152201:-|nuORF REV__ENST00000425350.1_1_13:49151796-49152201:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.3416137695312 2 699.338766 1396.66298 0.30636 0.00021425 -0.03393 -2.3729E-05 0.27243 0.00019052 699.3386937623801 48.505 0.31267 48.133 47.945 48.258 -0.37172 57 15 5 0 0 0 0.6889 1 25971 25971 5.2969 0.39987 1 88254000 + 51844 26893 35015 35812 60281 60281 -0.019485393105696858 REETKKKI 8 Unmodified _REETKKKI_ 0 0 0 RNF214-SIDT2|1|fusion;ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214 RNF214-SIDT2|1|fusion;ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.3138427734375 2 516.314023 1030.61349 0.27736 0.00014321 0.23313 0.00012037 0.51049 0.00026357 516.3141128314248 89.91 0.36768 89.91 89.746 90.114 0 67 26 3 0 0 0 0.81007 2 49683 49683;49782 0.6015 0.14316 1 2415700 51845 7591;30150 35016 35813 60282;60283 60282 0.09941120742928433 REEVFDRKSM 10 Unmodified _REEVFDRKSM_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8850402832031 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 35.934 1 35.934 35.434 36.434 0 0 0 0 0.97784 1 19027 19027 3.0723 0.81953 1 + 51846 21053 35017 35814 60284 60284 -0.006769608023205365 REEYEAHQDRV 11 Unmodified _REEYEAHQDRV_ 0 0 0 nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1 nc|ENSG00000204227|Q06587-2|RING1 nc|ENSG00000204227|Q06587-2|RING1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 716.3341064453125 2 716.334204 1430.65385 NaN NaN NaN NaN NaN NaN NaN 89.438 1 89.438 88.938 89.938 0 0 0 0 0.9435 1 49487 49487 0 0 1 51847 10253 35018 35815 60285 60285 -0.04424609395277912 REFADFEYR 9 Unmodified _REFADFEYR_ 0 0 0 nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A;ENST00000590416.1_1_19:34712331-34717333:+|nuORF nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.7218017578125 3 411.528005 1231.56219 1.3616 0.00056035 0.17689 7.2797E-05 1.5385 0.00063314 411.5281797593646 35.761 0.056831 31.568 31.541 31.598 -4.1928 5 3 2 0 0 0 0.16418 1 20812 20812 13.615 6.5131 1 2350300 51848 10808 35019 35816 60286 60286 -0.04433248021769032 REFGARCV 8 Unmodified _REFGARCV_ 0 0 0 REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2357482910156 2 469.237261 936.45997 0.77452 0.00036344 -0.74589 -0.00035 0.028631 1.3435E-05 469.2366977723119 35.163 0.32597 31.068 30.882 31.208 -4.0951 33 18 2 0 0 0 0.57045 1 20435 20435 28.487 0 1 25666000 + 51849 24291 35020 35817 60287 60287 -0.010801925743635366 REFLEKEEL 9 Unmodified _REFLEKEEL_ 0 0 0 nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 nc|ENSG00000028528|Q13596-2|SNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8151245117188 2 596.814053 1191.61355 -0.09643 -5.7551E-05 0.33595 0.0002005 0.23952 0.00014295 596.8145306601739 31.6 0.23704 31.6 31.463 31.7 0 20 11 3 0 0 0 0.2324 1 16468 16468 20.415 1.1575 1 1870000 51850 574 35021 35818 60288 60288 0.02541075952308347 REFMGTKWLE 10 Unmodified _REFMGTKWLE_ 0 0 0 REV__nc|ENSG00000162959|Q9Y316-2|MEMO1 REV__nc|ENSG00000162959|Q9Y316-2|MEMO1 MSMS AL20221201_MKP_PDAC_01 4 432.8849792480469 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 102.78 1 96.6 96.1 97.1 -6.1757 0 0 0 0.99146 1 68952 68952 1.5923 0.26264 1 + 51851 21711 35022 35819 60289 60289 -0.002748713085793497 REFSVLITD 9 Unmodified _REFSVLITD_ 0 0 0 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 REV__nc|ENSG00000168067|Q12851-2|MAP4K2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2908935546875 2 540.290214 1078.56587 NaN NaN NaN NaN NaN NaN NaN 50.427 1 50.378 49.878 50.878 -0.048824 0 0 0 0.73776 1 27269 27269 8.1555 0 1 + 51852 22286 35023 35820 60290 60290 0.029734217520854145 REFVEGACETH 11 Unmodified _REFVEGACETH_ 0 0 0 REV__ENST00000544145.1_1_6:16289789-16295414:+|nuORF REV__ENST00000544145.1_1_6:16289789-16295414:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.5241394042969 3 426.524155 1276.55064 -0.36185 -0.00015434 -0.19949 -8.5089E-05 -0.56135 -0.00023943 426.5244571461631 21.352 0.13717 21.352 21.297 21.434 0 40 18 3 0 0 0 0.7187 1 10781 10781 1.0136 0 1 1713400 + 51853 20220 35024 35821 60291 60291 -0.07657813107402944 REFVEGACETH 11 Unmodified _REFVEGACETH_ 0 0 0 REV__ENST00000544145.1_1_6:16289789-16295414:+|nuORF REV__ENST00000544145.1_1_6:16289789-16295414:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5253601074219 3 426.524155 1276.55064 0.3817 0.0001628 0.1469 6.2658E-05 0.5286 0.00022546 426.5242715850052 23.667 0.40322 20.84 20.669 21.073 -2.8273 38 24 2 0 0 0 0.70069 1 12806 12806 1.9275 0.021128 1 5024500 + 51854 20220 35024 35821 60292 60292 -0.07657813107402944 REGEIVISY 9 Unmodified _REGEIVISY_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2822265625 2 533.282389 1064.55022 0.4285 0.00022851 0.51984 0.00027722 0.94834 0.00050574 533.2825973463385 53.653 0.27532 53.201 53.046 53.321 -0.45173 26 13 2 0 0 0 0.06294 1 29102 29102 41.84 0 1 23149000 + 51855 24605 35025 35822 60293 60293 0.020531352350417365 REGNEPPD 8 Unmodified _REGNEPPD_ 0 0 0 REV__nc|ENSG00000164867|P29474-3|NOS3 REV__nc|ENSG00000164867|P29474-3|NOS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2049865722656 2 457.204138 912.393724 NaN NaN NaN NaN NaN NaN NaN 82.138 1 82.138 81.638 82.638 0 0 0 0 0.97444 1 45576 45576 0.69038 0 1 + 51856 29753 35026 35823 60294 60294 -0.06597729935424468 REGRMASF 8 Unmodified _REGRMASF_ 0 0 0 ENST00000504251.6_1_5:40728574-40756023:-|nuORF;ENST00000503936.6_1_5:40716581-40756023:-|nuORF;ENST00000511730.2_1_5:40716249-40756023:-|nuORF ENST00000504251.6_1_5:40728574-40756023:-|nuORF ENST00000504251.6_1_5:40728574-40756023:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2362060546875 2 477.234719 952.454884 0.23838 0.00011377 0.028103 1.3412E-05 0.26649 0.00012718 477.2346612952702 26.193 0.31114 23.242 23.063 23.374 -2.9511 35 17 3 0 0 0 0.73714 1 14456 14456 13.906 3.0821 1 8785800 51857 14480 35027 35824 60295 60295 -0.023244964369837362 REGTHTRYHMK 11 Unmodified _REGTHTRYHMK_ 0 0 0 REV__ENSG00000101115|ENST00000217086|SALL4;REV__nc|ENSG00000103449|Q9NSC2-2|SALL1 REV__ENSG00000101115|ENST00000217086|SALL4 MSMS AL20221201_MKP_PDAC_01 4 708.3489379882812 2 708.351677 1414.6888 NaN NaN NaN NaN NaN NaN NaN 59.216 1 53.142 52.642 53.642 -6.0745 0 0 0 0.81193 1 37999 37999 11.495 1.3441 1 + 51858 18131;18306 35028 35825 60296 60296 -0.0019564506831102335 REHDRCPQNI 10 Unmodified _REHDRCPQNI_ 0 0 0 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 ENSG00000100078|ENST00000215885|PLA2G3 MSMS AL20221201_MKP_PDAC_01 4 423.2060546875 3 423.203527 1266.58875 NaN NaN NaN NaN NaN NaN NaN 36.795 1 32.511 32.011 33.011 -4.2835 0 0 0 0.92825 1 21517 21517 3.5871 0 1 51859 1750 35029 35826 60297 60297 -0.03387882402080322 REHHLRYWLHY 11 Unmodified _REHHLRYWLHY_ 0 0 0 nc|ENSG00000117411|O60909-2|B4GALT2;ENSG00000117411|ENST00000372324|B4GALT2;nc|ENSG00000117411|O60909-3|B4GALT2 nc|ENSG00000117411|O60909-2|B4GALT2 nc|ENSG00000117411|O60909-2|B4GALT2 MSMS AL20221201_MKP_PDAC_01 4 805.4121704101562 2 805.410383 1608.80621 NaN NaN NaN NaN NaN NaN NaN 66.089 1 59.913 59.413 60.413 -6.1757 0 0 0 0.9428 1 42958 42958 1.4819 1.1313 1 51860 16149 35030 35827 60298 60298 0.026162558628357147 REHRHRRRYYY 11 Unmodified _REHRHRRRYYY_ 0 0 0 REV__ENSG00000170464|ENST00000302060|DNAJC18 REV__ENSG00000170464|ENST00000302060|DNAJC18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 846.443115234375 2 846.440538 1690.86652 NaN NaN NaN NaN NaN NaN NaN 99.385 1 99.354 98.854 99.854 -0.031067 0 0 0 0.9435 1 55197 55197 0 0 1 + 51861 22484 35031 35828 60299 60299 0.04872366245945159 REHVKRHSL 9 Unmodified _REHVKRHSL_ 0 0 0 nc|ENSG00000205189|Q96DT7-4|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;ENSG00000205189|ENST00000455036|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 nc|ENSG00000205189|Q96DT7-4|ZBTB10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.6990051269531 3 387.891501 1160.65267 1.1638 0.00045143 -0.51954 -0.00020153 0.64425 0.0002499 387.89142439022214 22.161 0.21417 19.427 19.291 19.505 -2.7348 19 11 2 0 0 0 0.20883 1 11952 11952 8.1555 8.1555 1 3734200 51862 10351 35032 35829 60300 60300 0.07877265817182888 REIKLYLLK 9 Unmodified _REIKLYLLK_ 0 0 0 REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3759155273438 2 588.379166 1174.74378 -0.48979 -0.00028818 -1.4564 -0.0008569 -1.9462 -0.0011451 588.3778217834312 105.07 0.064697 105.02 104.99 105.05 -0.048737 36 17 3 0 0 0 0.59218 1 58311 58311 1.8442 0 1 6408100 + 51863 26921 35033 35830 60301 60301 0.16339716741913435 REIKLYLLK 9 Unmodified _REIKLYLLK_ 0 0 0 REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF REV__ENST00000427278.7_1_2:145275823-145275997:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 588.379166 1174.74378 -0.48979 -0.00028818 -1.4564 -0.0008569 -1.9462 -0.0011451 588.3778217834312 105.07 0.064697 105.02 104.99 105.05 -0.048737 0 0 NaN 1.8442 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 6408100 + 51864 26921 35033 35830 0.16339716741913435 REIMDYHTLL 10 Unmodified _REIMDYHTLL_ 0 0 0 REV__ENSG00000178295|ENST00000381254|GEN1 REV__ENSG00000178295|ENST00000381254|GEN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8887939453125 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 49.271 1 48.899 48.399 49.399 -0.37172 0 0 0 1.0024 1 26480 26480 0.13989 0 1 + 51865 23033 35034 35831 60302 60302 0.010571113458127002 REKGRLHRR 9 Unmodified _REKGRLHRR_ 0 0 0 REV__ENST00000592895.5_1_19:1987398-1987842:-|nuORF REV__ENST00000592895.5_1_19:1987398-1987842:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.367919921875 2 604.365779 1206.717 4.0478 0.0024464 -0.037452 -2.2634E-05 4.0104 0.0024237 604.3655937932009 98.789 0.66156 98.761 98.584 99.246 -0.028282 65 23 5 0 0 0 0.62242 1 54853 54853 0 0 1 125120000 + 51866 29184 35035 35832 60303 60303 0.12191465693945247 REKKKKKCR 9 Unmodified _REKKKKKCR_ 0 0 0 REV__ENST00000413731.1_1_17:16649540-16650074:-|nuORF REV__ENST00000413731.1_1_17:16649540-16650074:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3773803710938 2 602.376966 1202.73938 0.96293 0.00058005 -0.43956 -0.00026478 0.52337 0.00031527 602.3765631050113 105.99 0.97316 99.811 99.547 100.52 -6.1757 345 148 3 0 0 0 0.61256 1 71005 71005 0.6015 0.076735 1 11909000 + 51867 26740 35036 35833 60304 60304 0.14611929047396188 REKKKMVH 8 Unmodified _REKKKMVH_ 0 0 0 ENST00000424148.1_1_11:1618612-1618831:+|nuORF ENST00000424148.1_1_11:1618612-1618831:+|nuORF ENST00000424148.1_1_11:1618612-1618831:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5447998046875 3 352.542933 1054.60697 NaN NaN NaN NaN NaN NaN NaN 24.98 1 24.98 24.48 25.48 0 0 0 0 0.97444 1 12788 12788 3.5965 1.3137 1 51868 13141 35037 35834 60305 60305 0.08184904310587626 REKQQLLHLL 10 Unmodified _REKQQLLHLL_ 0 0 0 nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP nc|ENSG00000178104|Q5VU43-3|PDE4DIP nc|ENSG00000178104|Q5VU43-3|PDE4DIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5964660644531 3 426.594461 1276.76155 1.2897 0.00055017 -0.24897 -0.00010621 1.0407 0.00044396 426.5944843465933 41.598 0.32895 36.99 36.857 37.186 -4.6079 32 21 2 0 0 0 0.69385 1 25121 25121 3.5871 0.26742 1 9490500 51869 8731 35038 35835 60306 60306 0.1342443199682748 REKTHSRHHI 10 Unmodified _REKTHSRHHI_ 0 0 0 REV__ENSG00000170265|ENST00000610704|ZNF282 REV__ENSG00000170265|ENST00000610704|ZNF282 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2369384765625 3 434.23756 1299.69085 0.1975 8.5761E-05 -2.3899 -0.0010378 -2.1924 -0.00095204 434.5707538296859 82.846 0.16887 82.846 82.791 82.96 0 11 7 2 0 0 0 0.70951 1 45966 45966 0.77653 0 1 445430 + 51870 22463 35039 35836 60307 60307 0.05299151731856 RELCAAFA 8 Unmodified _RELCAAFA_ 0 0 0 REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF REV__ENST00000554315.5_1_14:73753704-73876743:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7225646972656 2 440.720913 879.427273 0.92774 0.00040887 0.99797 0.00043983 1.9257 0.0008487 440.72126946184164 63.236 0.87181 57.06 56.78 57.652 -6.1757 122 48 3 0 0 0 0.72953 3 40724 40724;40864;41003 14.582 14.582 1 483770000 + 51871 18410 35040 35837 60308;60309;60310 60308 -0.017263996972246787 RELELKVPLV 10 Unmodified _RELELKVPLV_ 0 0 0 nc|ENSG00000172340|Q96I99-2|SUCLG2;ENSG00000172340|ENST00000307227|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 nc|ENSG00000172340|Q96I99-2|SUCLG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2508544921875 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 78.193 1 77.709 77.209 78.209 -0.48457 0 0 0 0.99897 1 42825 42825 0.77653 0 1 51872 16383 35041 35838 60311 60311 0.14403109016711824 RELKEQMELFY 11 Unmodified _RELKEQMELFY_ 0 0 0 REV__ENST00000608648.1_1_19:18220994-18239762:+|nuORF REV__ENST00000608648.1_1_19:18220994-18239762:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.9171447753906 3 495.918393 1484.73335 0.82886 0.00041105 0.27824 0.00013798 1.1071 0.00054903 496.2541333716004 69.51 1.2947 63.335 62.633 63.928 -6.1757 129 71 3 0 0 0 0.42108 1 45572 45572 12.228 0 1 57419000 + 51873 17972 35042 35839 60312 60312 0.010373212345484717 RELNSKFSF 9 Unmodified _RELNSKFSF_ 0 0 0 REV__ENSG00000196417|ENST00000396408|ZNF765 REV__ENSG00000196417|ENST00000396408|ZNF765 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5325927734375 3 376.532979 1126.57711 -0.27531 -0.00010366 -0.12496 -4.7051E-05 -0.40027 -0.00015071 376.53293211119575 34.654 0.27486 34.463 34.331 34.606 -0.19131 26 12 3 0 0 0 0.25681 1 18143 18143 23.79 0 1 9126300 + 51874 23826 35043 35840 60313 60313 0.018882438462242135 RELNSKFSF 9 Unmodified _RELNSKFSF_ 0 0 0 REV__ENSG00000196417|ENST00000396408|ZNF765 REV__ENSG00000196417|ENST00000396408|ZNF765 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5332336425781 3 376.532979 1126.57711 0.1009 3.7991E-05 -0.41556 -0.00015647 -0.31467 -0.00011848 376.5330542908407 34.398 0.27518 34.425 34.265 34.54 0.027401 26 12 3 0 0 0 0.25681 1 18126 18126 13.615 0 1 2506300 + 51875 23826 35043 35840 60314 60314 0.018882438462242135 RELNSKFSF 9 Unmodified _RELNSKFSF_ 0 0 0 REV__ENSG00000196417|ENST00000396408|ZNF765 REV__ENSG00000196417|ENST00000396408|ZNF765 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 376.532979 1126.57711 -0.62116 -0.00023389 0.4536 0.00017079 -0.16756 -6.3092E-05 376.53309056012694 34.519 0.19453 34.519 34.402 34.597 0 0.14659 0.00074829 NaN 23.79 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1909600 + 51876 23826 35043 35840 0.018882438462242135 RELPDPVL 8 Unmodified _RELPDPVL_ 0 0 0 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1;nc|ENSG00000134668|Q6ZMY3-2|SPOCD1;ENSG00000134668|ENST00000360482|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 nc|ENSG00000134668|Q6ZMY3-3|SPOCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7695007324219 2 469.768917 937.523281 0.78843 0.00037038 -0.16612 -7.8036E-05 0.62232 0.00029234 469.7686703845541 49.579 0.40071 49.579 49.373 49.773 0 29 17 2 0 0 0 0.64853 1 27266 27266 21.747 0 1 2496500 51877 4628 35044 35841 60315 60315 0.05202071414510101 RELRQVQERLV 11 Unmodified _RELRQVQERLV_ 0 0 0 REV__ENSG00000181215|ENST00000531445|C4orf50 REV__ENSG00000181215|ENST00000531445|C4orf50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2132568359375 4 357.212575 1424.82119 1.8097 0.00064646 -0.021349 -7.6263E-06 1.7884 0.00063883 357.4633146715893 20.122 0.37532 17.466 17.22 17.596 -2.6564 60 24 3 0 0 0 0.73237 1 10682 10682 1.2148 0.20126 1 11679000 + 51878 23195 35045 35842 60316 60316 0.12577702940143354 RELTVELKNP 10 Unmodified _RELTVELKNP_ 0 0 0 REV__ENST00000595091.6_2_19:53856949-53857078:+|nuORF REV__ENST00000595091.6_2_19:53856949-53857078:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2332763671875 3 400.231189 1197.67174 NaN NaN NaN NaN NaN NaN NaN 49.263 1 49.263 48.763 49.763 0 0 0 0 0.99008 1 27094 27094 1.7423 1.1154 1 + 51879 29207 35046 35843 60317 60317 0.08080757597554111 REMRWWHEWRR 11 Unmodified _REMRWWHEWRR_ 0 0 0 REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF REV__ENST00000398117.1_1_18:60791148-60791340:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4285888671875 2 864.426042 1726.83753 NaN NaN NaN NaN NaN NaN NaN 72.253 1 72.253 71.753 72.753 0 0 0 0 0.9435 1 40235 40235 0 0 1 + 51880 26558 35047 35844 60318 60318 0.003185056252959839 RENAALRRR 9 Unmodified _RENAALRRR_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000475705.1_1_6:32086681-32087735:-|nuORF nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2274169921875 3 381.226883 1140.65882 NaN NaN NaN NaN NaN NaN NaN 71.32 1 71.32 70.82 71.82 0 0 0 0 0.85447 1 39728 39728 0.96228 0 1 51881 10452 35048 35845 60319 60319 0.09411784048688787 RENEDSCVTF 10 Unmodified _RENEDSCVTF_ 0 0 0 nc|ENSG00000107447|P04053-2|DNTT;ENSG00000107447|ENST00000371174|DNTT nc|ENSG00000107447|P04053-2|DNTT nc|ENSG00000107447|P04053-2|DNTT MSMS AL20221201_MKP_PDAC_01 4 400.5045776367188 3 400.50476 1198.49245 NaN NaN NaN NaN NaN NaN NaN 47.955 1 42.721 42.221 43.221 -5.2339 0 0 0 0.97556 1 29820 29820 3.3196 0 1 51882 2497 35049 35846 60320 60320 -0.09885494752688828 RENLRELSR 9 Unmodified _RENLRELSR_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.554443359375 3 391.554666 1171.64217 0.18627 7.2935E-05 -2.1108 -0.00082647 -1.9245 -0.00075354 391.88801196991705 59.408 0.20613 59.355 59.273 59.479 -0.053059 18 10 2 0 0 0 0.5209 1 32383 32383 6.1918 0.78914 1 4180800 51883 7710 35050 35847 60321 60321 0.06321238372083826 RENLRELSR 9 Unmodified _RENLRELSR_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.826904296875 2 586.82836 1171.64217 0.49012 0.00028762 -2.0827 -0.0012222 -1.5926 -0.00093458 586.8264342723472 61.966 0.33322 61.933 61.711 62.044 -0.032787 41 16 3 0 0 0 0.31356 1 33796 33796 22.736 0 1 8492700 51884 7710 35050 35847 60322 60322 0.06321238372083826 RENLRELSR 9 Unmodified _RENLRELSR_ 0 0 0 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1;nc|ENSG00000168060|Q9UQQ1-8|NAALADL1;nc|ENSG00000168060|Q9UQQ1-2|NAALADL1;nc|ENSG00000168060|Q9UQQ1-3|NAALADL1;ENSG00000168060|ENST00000358658|NAALADL1;nc|ENSG00000168060|Q9UQQ1-4|NAALADL1;nc|ENSG00000168060|Q9UQQ1-5|NAALADL1;nc|ENSG00000168060|Q9UQQ1-6|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 nc|ENSG00000168060|Q9UQQ1-7|NAALADL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8270874023438 2 586.82836 1171.64217 1.0307 0.00060485 -2.2964 -0.0013476 -1.2657 -0.00074275 586.8265023113602 87.023 0.3555 80.847 80.661 81.017 -6.1757 43 19 3 0 0 0 0.20389 1 57323 57323 29.841 1.3537 1 15525000 51885 7710 35050 35847 60323 60323 0.06321238372083826 RENVMEDFL 9 Unmodified _RENVMEDFL_ 0 0 0 ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2 ENST00000411990.6_1_1:207235951-207252361:+|nuORF ENST00000411990.6_1_1:207235951-207252361:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8503723144531 3 384.849979 1151.52811 1.6342 0.00062891 1.965 0.00075624 3.5992 0.0013852 384.8507618590732 37.45 0.27958 33.167 32.991 33.27 -4.2835 22 16 2 0 0 0 0.55144 1 22015 22015 2.4985 0.21571 1 4355100 51886 3731 35051 35848 60324 60324 -0.04159412505009641 RENYLRWTFFI 11 Unmodified _RENYLRWTFFI_ 0 0 0 REV__ENSG00000124557|ENST00000684113|BTN1A1 REV__ENSG00000124557|ENST00000684113|BTN1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.9393920898438 3 515.605137 1543.79358 0.43111 0.00022228 -0.89917 -0.00046362 -0.46806 -0.00024133 515.9390727160104 62.046 0.23339 62.013 61.906 62.14 -0.032787 31 11 4 0 0 0 0.72131 1 33896 33896 2.2527 1.7982 1 6092300 + 51887 19454 35052 35849 60325 60325 0.0434379967989571 RENYLRWTFFI 11 Unmodified _RENYLRWTFFI_ 0 0 0 REV__ENSG00000124557|ENST00000684113|BTN1A1 REV__ENSG00000124557|ENST00000684113|BTN1A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 515.605137 1543.79358 0.43111 0.00022228 -0.89917 -0.00046362 -0.46806 -0.00024133 515.9390727160104 62.046 0.23339 62.013 61.906 62.14 -0.032787 -0.013687 0.00048309 NaN 2.2527 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 6092300 + 51888 19454 35052 35849 0.0434379967989571 REPAIVRFF 9 Unmodified _REPAIVRFF_ 0 0 0 ENSG00000213918|ENST00000246949|DNASE1 ENSG00000213918|ENST00000246949|DNASE1 ENSG00000213918|ENST00000246949|DNASE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.82470703125 2 567.824558 1133.63456 0.58703 0.00033333 -1.2733 -0.00072303 -0.6863 -0.0003897 567.8244331842634 91.996 0.23134 91.515 91.465 91.697 -0.48092 21 12 2 0 0 0 0.55144 1 50327 50327 4.3292 0.73274 1 364370 51889 10465 35053 35850 60326 60326 0.07309130842463674 REPLLKRVKKE 11 Unmodified _REPLLKRVKKE_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.9653930664062 3 465.964666 1394.87217 1.5358 0.00071563 0.75295 0.00035085 2.2888 0.0010665 465.9648767413972 104.99 0.17142 98.819 98.719 98.891 -6.1757 47 13 5 0 0 0 0.74244 1 70257 70257 0.073264 0.073264 1 345760000 + 51890 21279 35054 35851 60327 60327 0.19052651985043667 REPQPAASEAF 11 Unmodified _REPQPAASEAF_ 0 0 0 ENSG00000100151|ENST00000356976|PICK1;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.794677734375 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.42108 2 51997 51547;51997 20.415 0 1 114760000 51891 1761 35055 35852 60328;60329 60329 -0.019972653673448804 REQCPSYTF 9 Unmodified _REQCPSYTF_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7513427734375 2 565.750398 1129.48624 0.61602 0.00034851 -1.0599 -0.00059964 -0.44388 -0.00025112 565.7498626223178 89.677 0.25587 89.176 89.001 89.257 -0.50172 15 10 2 0 0 0 0.56345 1 49049 49049 3.5965 1.5367 1 244700 51892 7473 35056 35853 60330 60330 -0.07331968193557259 REQERLHWEM 10 Unmodified _REQERLHWEM_ 0 0 0 CSRNP3|p.R118W|1|0.09|ENSG00000178662|chr2:165657964-165657964|C/T|missense_variant CSRNP3|p.R118W|1|0.09|ENSG00000178662|chr2:165657964-165657964|C/T|missense_variant CSRNP3|p.R118W|1|0.09|ENSG00000178662|chr2:165657964-165657964|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.3373413085938 2 707.338235 1412.66192 -0.7348 -0.00051975 -1.8054 -0.001277 -2.5402 -0.0017968 707.3369345785051 48.68 0.22889 48.68 48.579 48.808 0 13 10 2 0 0 0 0.68209 1 26744 26744 4.897 0.36815 1 1481700 51893 220 35057 35854 60331 60331 -0.027907536794828047 REQFDEPVEF 10 Unmodified _REQFDEPVEF_ 0 0 0 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 REV__nc|ENSG00000114841|Q9P2D7-6|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.5362243652344 3 432.534937 1294.58298 0.34414 0.00014885 2.0822 0.00090063 2.4264 0.0010495 432.5359929392985 38.853 0.16099 38.864 38.801 38.962 0.011452 16 7 3 0 0 0 0.71276 1 20731 20731 0.62683 0.17231 1 2892200 + 51894 18935 35058 35855 60332 60332 -0.052527024327673644 REQFYRYY 8 Unmodified _REQFYRYY_ 0 0 0 ENSG00000159069|ENST00000325285|FBXW5;nc|ENSG00000159069|Q969U6-2|FBXW5 ENSG00000159069|ENST00000325285|FBXW5 ENSG00000159069|ENST00000325285|FBXW5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7935791015625 2 612.793455 1223.57236 0.43086 0.00026403 -0.53961 -0.00033067 -0.10875 -6.6642E-05 612.7933833644433 72.708 0.74568 72.708 72.306 73.052 0 77 33 3 0 0 0 0.80975 1 40311 40311 0.79363 0 1 1339500 51895 6623 35059 35856 60333 60333 -0.030486402965152593 REQIKKKSLL 10 Unmodified _REQIKKKSLL_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MSMS AL20221201_MKP_PDAC_01 4 414.8600158691406 3 414.934595 1241.78196 NaN NaN NaN NaN NaN NaN NaN 22.011 1 19.276 18.776 19.776 -2.7348 0 0 0 1.0004 1 11824 11824 0.62683 0 1 + 51896 17185 35060 35857 60334 60334 0.17073602656591902 REQIYLHHLRF 11 Unmodified _REQIYLHHLRF_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.7116088867188 4 378.711205 1510.81572 1.6963 0.00064241 -1.1681 -0.00044237 0.52823 0.00020005 378.7109800454895 35.772 0.43809 31.579 31.382 31.82 -4.1928 95 27 5 0 0 0 0.70147 2 20748 20748;20884 4.1166 1.4854 1 51186000 + 51897 17607 35061 35858 60335;60336 60335 0.08074024148322678 REQIYLHHLRF 11 Unmodified _REQIYLHHLRF_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 378.711205 1510.81572 -0.25062 -9.4911E-05 -1.0129 -0.00038361 -1.2636 -0.00047853 378.7108793159559 31.825 0.27722 31.855 31.692 31.969 0.030106 0.13784 0.00011072 NaN 4.1166 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 16738000 + 51898 17607 35061 35858 0.08074024148322678 REQIYLHHLRF 11 Unmodified _REQIYLHHLRF_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 4 378.711205 1510.81572 1.6963 0.00064241 -1.1681 -0.00044237 0.52823 0.00020005 378.7109800454895 35.772 0.43809 31.579 31.382 31.82 -4.1928 -0.13784 -0.00012428 NaN 4.1166 95 27 5 NaN NaN NaN NaN 0 NaN NaN 0 51186000 + 51899 17607 35061 35858 0.08074024148322678 REQWRREQERM 11 Unmodified _REQWRREQERM_ 0 0 0 nc|ENSG00000047644|Q9ULE0-2|WWC3;ENSG00000047644|ENST00000380861|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3969116210938 2 802.397147 1602.77974 NaN NaN NaN NaN NaN NaN NaN 71.518 1 71.518 71.018 72.018 0 0 0 0 0.9435 1 39835 39835 0 0 1 51900 690 35062 35859 60337 60337 0.002461989091898431 REQYMKWVY 9 Unmodified _REQYMKWVY_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3 REV__ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8828735351562 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 46.758 1 46.758 46.258 47.258 0 0 0 0 0.84369 1 25567 25567 1.1933 0 1 + 51901 24033;23805;24073 35063 35860 60338 60338 -0.016068539630396117 RERAVEKRE 9 Unmodified _RERAVEKRE_ 0 0 0 ENSG00000177494|ENST00000317012|ZBED2 ENSG00000177494|ENST00000317012|ZBED2 ENSG00000177494|ENST00000317012|ZBED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5537414550781 3 391.554666 1171.64217 0.667 0.00026117 -1.7837 -0.00069841 -1.1167 -0.00043724 391.55385974090575 57.551 0.51497 57.485 57.22 57.735 -0.066036 39 25 2 0 0 0 0.5636 1 31251 31251 3.5871 0 1 2488000 51902 8690 35064 35861 60339 60339 0.06321238372061089 RERDWFPDQGY 11 Unmodified _RERDWFPDQGY_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.8328857421875 2 734.83384 1467.65313 -0.084488 -6.2085E-05 -1.0356 -0.00076099 -1.1201 -0.00082307 734.8330522212818 47.008 0.86125 47.008 46.718 47.579 0 105 40 4 0 0 0 0.69316 1 25640 25640 4.897 4.897 1 91618000 51903 3315 35065 35862 60340 60340 -0.061994040442868936 REREKEELSGY 11 Unmodified _REREKEELSGY_ 0 0 0 REV__ENSG00000136875|ENST00000374198|PRPF4 REV__ENSG00000136875|ENST00000374198|PRPF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.848876953125 2 698.34678 1394.67901 -0.56538 -0.00039483 0.56626 0.00039545 0.00087976 6.1438E-07 698.3472609713048 36.415 0.2472 36.165 36.026 36.273 -0.2497 26 11 3 0 0 0 0.61059 1 19075 19075 10.8 0 1 6183700 + 51904 20191 35066 35863 60341 60341 -0.0025455459265231184 REREKEELSGY 11 Unmodified _REREKEELSGY_ 0 0 0 REV__ENSG00000136875|ENST00000374198|PRPF4 REV__ENSG00000136875|ENST00000374198|PRPF4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 698.34678 1394.67901 -0.56538 -0.00039483 0.56626 0.00039545 0.00087976 6.1438E-07 698.3472609713048 36.415 0.2472 36.165 36.026 36.273 -0.2497 0 0 NaN 10.8 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6183700 + 51905 20191 35066 35863 -0.0025455459265231184 REREKRFSF 9 Unmodified _REREKRFSF_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8359985351562 2 627.838728 1253.6629 NaN NaN NaN NaN NaN NaN NaN 74.149 1 73.674 73.174 74.174 -0.47588 0 0 0 0.84564 1 40584 40584 2.0598 0.40713 1 51906 8374 35067 35864 60342 60342 0.04621828751760404 RERESISFWFP 11 Unmodified _RERESISFWFP_ 0 0 0 REV__ENST00000327827.11_1_16:9211589-9211736:+|nuORF REV__ENST00000327827.11_1_16:9211589-9211736:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.2459716796875 3 485.245609 1452.715 0.74257 0.00036033 -0.53569 -0.00025994 0.20688 0.00010039 485.2454675569685 83.097 0.43852 83.159 82.918 83.356 0.062706 47 16 4 0 0 0 0.70705 1 45950 45950 3.5927 1.5067 1 10257000 + 51907 25573 35068 35865 60343 60343 0.006749473748186574 REREWDRDR 9 Unmodified _REREWDRDR_ 0 0 0 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 REV__nc|ENSG00000088367|Q9H4G0-4|EPB41L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8836059570312 3 439.885074 1316.63339 NaN NaN NaN NaN NaN NaN NaN 16.41 1 16.41 15.91 16.91 0 0 0 0 0.86054 1 7998 7998 0.20686 0 1 + 51908 17803 35069 35866 60344 60344 -0.012257352643928243 RERGRAASY 9 Unmodified _RERGRAASY_ 0 0 0 REV__ENST00000262482.10_2_17:4843544-4843607:+|nuORF REV__ENST00000262482.10_2_17:4843544-4843607:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2804565429688 2 533.281046 1064.54754 0.90698 0.00048368 -0.13087 -6.9793E-05 0.77611 0.00041388 533.2806575360926 60.093 0.79396 53.978 53.701 54.495 -6.1147 91 42 3 0 0 0 0.15471 1 38565 38565 27.629 0.74515 1 210200000 + 51909 25021 35070 35867 60345 60345 0.01784724620756606 RERMRVERERR 11 Unmodified _RERMRVERERR_ 0 0 0 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.9579467773438 3 524.958579 1571.85391 0.27253 0.00014307 -1.7139 -0.00089975 -1.4414 -0.00075669 524.9580775922359 23.93 0.3346 21.102 20.931 21.265 -2.8273 47 19 4 0 0 0 0.73114 1 12961 12961 1.3296 0 1 9114600 51910 4193 35071 35868 60346 60346 0.09085586791343303 RERMRVERERR 11 Unmodified _RERMRVERERR_ 0 0 0 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 ENSG00000130254|ENST00000252542|SAFB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 524.958579 1571.85391 -0.0056441 -2.9629E-06 -2.3774 -0.001248 -2.383 -0.001251 525.2916480223829 21.1 0.039677 21.1 21.071 21.111 0 -0.0010125 -0.0007286 NaN 1.3296 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 906960 51911 4193 35071 35868 0.09085586791343303 RERQIIQLRL 10 Unmodified _RERQIIQLRL_ 0 0 0 REV__nc|ENSG00000119509|Q9Y283-2|INVS REV__nc|ENSG00000119509|Q9Y283-2|INVS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2774963378906 3 442.277244 1323.8099 NaN NaN NaN NaN NaN NaN NaN 94.157 1 94.157 93.657 94.657 0 0 0 0 1.0047 1 52049 52049 0.15932 0 1 + 51912 19192 35072 35869 60347 60347 0.16094925636707558 RERQIIQLRL 10 Unmodified _RERQIIQLRL_ 0 0 0 REV__nc|ENSG00000119509|Q9Y283-2|INVS REV__nc|ENSG00000119509|Q9Y283-2|INVS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2778930664062 3 442.277244 1323.8099 NaN NaN NaN NaN NaN NaN NaN 94.771 1 94.351 93.851 94.851 -0.42044 0 0 0 1.0047 1 51772 51772 0.15932 0 1 + 51913 19192 35072 35869 60348 60348 0.16094925636707558 RERRDLNEKL 10 Unmodified _RERRDLNEKL_ 0 0 0 REV__ENSG00000138771|ENST00000296043|SHROOM3;REV__ENSG00000146950|ENST00000380913|SHROOM2 REV__ENSG00000138771|ENST00000296043|SHROOM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.5836791992188 3 443.584625 1327.73205 0.12619 5.5975E-05 -3.9522 -0.0017531 -3.826 -0.0016972 443.5832487019343 71.85 0.18905 71.85 71.734 71.923 0 13 8 2 0 0 0 0.71981 1 40003 40003 0.69767 0.24315 1 819750 + 51914 20365;20856 35073 35870 60349 60349 0.08128867980644827 RERRNYRRRRC 11 Unmodified _RERRNYRRRRC_ 0 0 0 ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7977905273438 3 540.966068 1619.87638 -0.1213 -6.5618E-05 -1.0618 -0.00057438 -1.1831 -0.00064 541.2995798071273 31.87 0.34291 31.74 31.548 31.891 -0.12915 27 13 3 0 0 0 0.30604 1 16536 16536 0.094841 0.094841 1 3953800 51915 12355 35074 35871 60350 60350 0.0912323097963963 RERRNYRRRRC 11 Unmodified _RERRNYRRRRC_ 0 0 0 ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.9656372070312 3 540.966068 1619.87638 -0.24362 -0.00013179 -1.0031 -0.00054263 -1.2467 -0.00067442 541.2996786096555 31.783 0.29781 31.813 31.627 31.925 0.030106 28 13 3 0 0 0 0.74429 1 16632 16632 0.094841 0.094841 1 5193600 51916 12355 35074 35871 60351 60351 0.0912323097963963 RERRNYRRRRC 11 Unmodified _RERRNYRRRRC_ 0 0 0 ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF ENST00000371361.3_1_10:96112804-96114802:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.96630859375 3 540.966068 1619.87638 1.2169 0.00065832 -0.79844 -0.00043193 0.41849 0.00022639 540.9656765875347 35.903 0.30915 31.71 31.527 31.837 -4.1928 34 19 2 0 0 0 0.74429 1 20859 20859 0.094841 0.094841 1 9913800 51917 12355 35074 35871 60352 60352 0.0912323097963963 RERSPAPEPW 10 Unmodified _RERSPAPEPW_ 0 0 0 REV__ENST00000328914.4_1_7:4804199-4804568:+|nuORF REV__ENST00000328914.4_1_7:4804199-4804568:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.87646484375 3 408.875516 1223.60472 1.2048 0.00049262 -1.3664 -0.00055867 -0.16155 -6.6052E-05 408.8755494196113 34.186 0.61519 30.201 29.842 30.457 -3.9853 96 34 4 0 0 0 0.14688 1 19527 19527 35.08 7.7903 1 108450000 + 51918 25581 35075 35872 60353 60353 0.001861471064557918 RERWHHIF 8 Unmodified _RERWHHIF_ 0 0 0 REV__ENSG00000179938|ENST00000567927|GOLGA8J REV__ENSG00000179938|ENST00000567927|GOLGA8J MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.207763671875 3 394.208941 1179.60499 -0.53487 -0.00021085 -0.18724 -7.381E-05 -0.72211 -0.00028466 394.2088318230795 16.491 0.1249 16.492 16.441 16.566 0.0010548 60 39 2 0 0 0 0.80975 1 8119 8119 0.45834 0 1 788720 + 51919 23129 35076 35873 60354 60354 0.022376116169880333 RESGLSARKSF 11 Unmodified _RESGLSARKSF_ 0 0 0 REV__nc|ENSG00000117748|P15927-3|RPA2 REV__nc|ENSG00000117748|P15927-3|RPA2 MSMS AL20221201_MKP_PDAC_01 4 619.3386840820312 2 619.336018 1236.65748 NaN NaN NaN NaN NaN NaN NaN 49.145 1 43.748 43.248 44.248 -5.3961 0 0 0 0.82644 1 30680 30680 10.8 1.4164 1 + 51920 29595 35077 35874 60355 60355 0.048621051692634865 RESNLFRAPYF 11 Unmodified _RESNLFRAPYF_ 0 0 0 ENST00000514704.5_1_4:146018956-146019220:-|nuORF ENST00000514704.5_1_4:146018956-146019220:-|nuORF ENST00000514704.5_1_4:146018956-146019220:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2430725097656 3 467.242088 1398.70443 0.95848 0.00044784 0.42833 0.00020013 1.3868 0.00064797 467.2426269253019 92.223 0.27665 86.048 85.89 86.166 -6.1757 43 16 3 0 0 0 0.69838 1 60928 60928 4.4062 0.81348 1 81420000 51921 14656 35078 35875 60356 60356 0.021029647204386492 RESQPYLF 8 Unmodified _RESQPYLF_ 0 0 0 ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE ENSG00000146530|ENST00000275358|VWDE MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2645874023438 2 520.263999 1038.51345 1.0233 0.00053239 -1.0912 -0.0005677 -0.067884 -3.5318E-05 520.2632945681526 54.865 0.75399 49 48.542 49.296 -5.8653 91 46 3 0 0 0 0.50673 2 34943 34811;34943 34.102 5.6156 1 105570000 51922 5785 35079 35876 60357;60358 60358 -0.0042711659086762666 RESRPLMVQT 10 Unmodified _RESRPLMVQT_ 0 0 0 nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH nc|ENSG00000080031|Q9HD43-3|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2197265625 3 406.220407 1215.63939 -0.37695 -0.00015312 -1.0659 -0.000433 -1.4429 -0.00058613 406.22000274885914 23.086 0.26725 23.086 22.955 23.222 0 42 13 4 0 0 0 0.66658 1 11750 11750 6.6235 6.6235 1 11198000 51923 1291 35080 35877 60359 60359 0.04019646922915854 RESRQRKRK 9 Unmodified _RESRQRKRK_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2205810546875 3 415.253321 1242.73813 0.55028 0.00022851 -2.6438 -0.0010978 -2.0935 -0.00086933 415.5859817393644 56.946 0.23574 56.878 56.699 56.935 -0.068737 15 11 3 0 0 0 0.21906 1 30899 30899 0.23584 0 1 2137000 + 51924 17670 35081 35878 60360 60360 0.12647431002824305 RESRRREIREK 11 Unmodified _RESRRREIREK_ 0 0 0 REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 758.4367065429688 2 757.934754 1513.85495 -0.0039982 -3.0304E-06 -0.022722 -1.7222E-05 -0.02672 -2.0252E-05 757.9346529806181 97.293 0.53288 97.293 96.995 97.528 0 75 26 3 0 0 0 0.7453 3 53657 53657;53754;53848 0 0 1 9192500 + 51925 18396 35082 35879 60361;60362;60363 60361 0.11858124431910255 RESRRREIREK 11 Unmodified _RESRRREIREK_ 0 0 0 REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 757.9346313476562 2 757.934754 1513.85495 -0.0039982 -3.0304E-06 -0.022722 -1.7222E-05 -0.02672 -2.0252E-05 757.9346529806181 97.293 0.53288 97.293 96.995 97.528 0 75 26 3 0 0 0 0.30605 1 53754 53754 0 0 1 9192500 + 51926 18396 35082 35879 60364 60364 0.11858124431910255 RESRRREIREK 11 Unmodified _RESRRREIREK_ 0 0 0 REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF REV__ENST00000592920.5_1_19:55652034-55658489:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 757.9337768554688 2 757.934754 1513.85495 0.74375 0.00056371 -0.30392 -0.00023035 0.43983 0.00033336 757.9346439114337 101.89 0.34769 95.71 95.592 95.939 -6.1757 36 19 2 0 0 0 0.7453 1 68470 68470 0 0 1 24466000 + 51927 18396 35082 35879 60365 60365 0.11858124431910255 RETAHLLNYG 10 Unmodified _RETAHLLNYG_ 0 0 0 REV__ENSG00000181786|ENST00000324436|ACTL9 REV__ENSG00000181786|ENST00000324436|ACTL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.3035278320312 2 587.304187 1172.59382 -0.28727 -0.00016871 2.0682 0.0012146 1.7809 0.0010459 587.3053576101065 23.371 0.32161 23.371 23.126 23.448 0 26 15 2 0 0 0 0.70151 1 11871 11871 2.7352 1.2533 1 729150 + 51928 23222 35083 35880 60366 60366 0.014427447321850195 RETDTLWQ 8 Unmodified _RETDTLWQ_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MSMS AL20221201_MKP_PDAC_01 4 350.174560546875 3 350.173451 1047.49852 NaN NaN NaN NaN NaN NaN NaN 40.127 1 35.597 35.097 36.097 -4.5294 0 0 0 0.65904 1 23923 23923 24.021 4.6586 1 + 51929 29707;21097 35084 35881 60367 60367 -0.023326084588461526 REVEVFKIYI 10 Unmodified _REVEVFKIYI_ 0 0 0 REV__ENSG00000120458|ENST00000374979|MSANTD2 REV__ENSG00000120458|ENST00000374979|MSANTD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8731689453125 2 648.371538 1294.72852 1.4261 0.00092465 -2.7065 -0.0017548 -1.2804 -0.0008302 648.8698532012307 100.96 0.12087 94.788 94.748 94.869 -6.1757 8 6 2 0 0 0 0.54684 1 67676 67676 13.906 2.4113 1 14495000 + 51930 19246 35085 35882 60368 60368 0.09294805154104324 REVFCCGT 8 Unmodified _REVFCCGT_ 0 0 0 ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B ENSG00000283329|ENST00000637493|FAM240B MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.6977233886719 2 457.69658 913.378608 0.96047 0.0004396 1.091 0.00049933 2.0514 0.00093893 457.6969496926652 42.883 0.45142 38.198 37.917 38.369 -4.6846 46 28 2 0 0 0 0.74163 1 25902 25902 13.508 0 1 12655000 51931 10951 35086 35883 60369 60369 -0.08154636328629294 REVKPVIH 8 Unmodified _REVKPVIH_ 0 0 0 TDP2-DCDC2|1|fusion TDP2-DCDC2|1|fusion TDP2-DCDC2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.297607421875 2 489.298176 976.581799 -0.40175 -0.00019658 0.60408 0.00029558 0.20233 9.9E-05 489.29847596853523 18.784 0.27694 18.807 18.649 18.926 0.023106 45 36 2 0 0 0 0.80975 1 9397 9397 0.79363 0 1 562820 51932 30185 35087 35884 60370 60370 0.09257172779666689 REWPGDLYNN 10 Unmodified _REWPGDLYNN_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8622131347656 3 421.863276 1262.568 -0.4167 -0.00017579 -0.29119 -0.00012284 -0.70788 -0.00029863 421.8630261021705 21.419 0.17014 21.419 21.327 21.497 0 51 24 3 0 0 0 0.71981 1 10797 10797 0.69767 0.23933 1 1527300 51933 347 35088 35885 60371 60371 -0.05278149510058938 REWRCFQWWRM 11 Unmodified _REWRCFQWWRM_ 0 0 0 ENST00000582986.5_1_17:62801160-62833227:-|nuORF;ENST00000430334.7_1_17:43555485-43568071:-|nuORF ENST00000582986.5_1_17:62801160-62833227:-|nuORF ENST00000582986.5_1_17:62801160-62833227:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.3892822265625 2 842.392822 1682.77109 NaN NaN NaN NaN NaN NaN NaN 58.178 1 58.178 57.678 58.678 0 0 0 0 0.9435 1 32392 32392 0 0 1 51934 15580 35089 35886 60372 60372 -0.04298446261009303 REWRKQEKLDK 11 Unmodified _REWRKQEKLDK_ 0 0 0 REV__ENST00000473539.5_2_3:112080428-112080524:+|nuORF REV__ENST00000473539.5_2_3:112080428-112080524:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.7154235839844 4 379.715216 1514.83176 0.050037 1.9E-05 0.056127 2.1312E-05 0.10616 4.0312E-05 379.7152629661357 17.34 0.10697 17.345 17.295 17.402 0.0050564 15 6 3 0 0 0 0.74429 1 8738 8738 0.094841 0 1 750840 + 51935 27543 35090 35887 60373 60373 0.09493685594588896 REWRKQEKLDK 11 Unmodified _REWRKQEKLDK_ 0 0 0 REV__ENST00000473539.5_2_3:112080428-112080524:+|nuORF REV__ENST00000473539.5_2_3:112080428-112080524:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 379.715216 1514.83176 0.050037 1.9E-05 0.056127 2.1312E-05 0.10616 4.0312E-05 379.7152629661357 17.34 0.10697 17.345 17.295 17.402 0.0050564 0 0 NaN 0.094841 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 750840 + 51936 27543 35090 35887 0.09493685594588896 REWSGKEKWW 10 Unmodified _REWSGKEKWW_ 0 0 0 nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 nc|ENSG00000163346|Q96AQ6-3|PBXIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5664672851562 3 464.566683 1390.67822 NaN NaN NaN NaN NaN NaN NaN 28.627 1 28.565 28.065 29.065 -0.062159 0 0 0 1.0048 1 14781 14781 0.13989 0 1 51937 6979 35091 35888 60374 60374 -0.001493044510425534 REYEAAAY 8 Unmodified _REYEAAAY_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7239379882812 2 486.724707 971.43486 -0.52313 -0.00025462 -0.0068766 -3.347E-06 -0.53001 -0.00025797 486.72460681902 30.077 0.26969 30.077 29.953 30.222 0 28 12 3 0 0 0 0.57045 1 15589 15589 28.487 0 1 6067000 + 51938 18899 35092 35889 60375 60375 -0.05199968895965412 REYEAAAY 8 Unmodified _REYEAAAY_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7922973632812 2 486.724707 971.43486 1.0993 0.00053508 -0.64466 -0.00031377 0.45468 0.00022131 486.72420505570364 34.191 0.35611 30.206 29.984 30.34 -3.9853 31 19 2 0 0 0 8.7369 1 19557 19557 21.747 0 1 19080000 + 51939 18899 35092 35889 60376 60376 -0.05199968895965412 REYESSKQAQ 10 Unmodified _REYESSKQAQ_ 0 0 0 REV__ENST00000453705.1_3_X:154299864-154348422:+|nuORF REV__ENST00000453705.1_3_X:154299864-154348422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.1985168457031 3 409.198436 1224.57348 0.60771 0.00024867 -1.2595 -0.00051537 -0.65175 -0.0002667 409.19789090535704 52.253 0.21617 51.82 51.709 51.925 -0.43367 16 10 2 0 0 0 0.71981 1 28227 28227 0.69767 0.29695 1 1356000 + 51940 23505 35093 35890 60377 60377 -0.029824707182797283 REYNLVSF 8 Unmodified _REYNLVSF_ 0 0 0 REV__nc|ENSG00000164362|O14746-3|TERT REV__nc|ENSG00000164362|O14746-3|TERT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7421875 2 514.263999 1026.51345 0.12578 6.4685E-05 -0.16959 -8.7216E-05 -0.043812 -2.2531E-05 514.2638671287101 61.994 0.28014 61.994 61.842 62.122 0 25 11 3 0 0 0 8.7369 1 34490 34490 13.508 0 1 1964200 + 51941 21912 35094 35891 60378 60378 0.0012488340912568674 RFAEELASL 9 Unmodified _RFAEELASL_ 0 0 0 REV__ENSG00000171368|ENST00000360578|TPPP REV__ENSG00000171368|ENST00000360578|TPPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2763061523438 2 518.277106 1034.53966 0.37679 0.00019528 -0.41085 -0.00021293 -0.034053 -1.7649E-05 518.2766215975485 63.804 0.31982 63.319 63.172 63.492 -0.48512 30 17 2 0 0 0 0.15471 2 34765 34765;34870 27.629 2.2295 1 6985900 + 51942 22556 35095 35892 60379;60380 60379 0.023771525806068894 RFAENPSLF 9 Unmodified _RFAENPSLF_ 0 0 0 REV__ENSG00000183337|ENST00000378444|BCOR REV__ENSG00000183337|ENST00000378444|BCOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7767944335938 2 540.777274 1079.53999 0.477 0.00025795 0.12014 6.4969E-05 0.59714 0.00032292 540.7773707661416 58.918 0.28475 58.858 58.7 58.984 -0.060719 17 13 2 0 0 0 0.25681 1 32052 32052 19.257 0 1 1860400 + 51943 23340 35096 35893 60381 60381 0.003405723004561878 RFAHGTAGLVF 11 Unmodified _RFAHGTAGLVF_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.549072265625 3 392.548852 1174.62473 1.184 0.00046478 -0.30916 -0.00012136 0.87484 0.00034342 392.5487008741621 46.788 0.30057 46.754 46.637 46.938 -0.033417 24 14 2 0 0 0 0.047603 1 25174 25174 42.068 25.793 1 10362000 51944 489 35097 35894 60382 60382 0.0443994283707525 RFAHGTAGLVF 11 Unmodified _RFAHGTAGLVF_ 0 0 0 nc|ENSG00000014919|Q7KZN9-2|COX15;ENSG00000014919|ENST00000016171|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 nc|ENSG00000014919|Q7KZN9-2|COX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3218994140625 2 588.31964 1174.62473 1.4223 0.00083679 1.0202 0.00060021 2.4425 0.001437 588.3203694007201 46.78 0.26081 46.747 46.637 46.898 -0.033417 25 12 3 0 0 0 0.13335 1 25183 25183 38.615 23.366 1 6511800 51945 489 35097 35894 60383 60383 0.0443994283707525 RFALEMFNR 9 Unmodified _RFALEMFNR_ 0 0 0 ENSG00000174080|ENST00000310325|CTSF ENSG00000174080|ENST00000310325|CTSF ENSG00000174080|ENST00000310325|CTSF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.5254821777344 3 395.206209 1182.5968 1.4179 0.00056037 4.0908 0.0016167 5.5088 0.0021771 395.2081129173028 37.304 0.20087 33.021 32.955 33.156 -4.2835 14 11 2 0 0 0 0.19891 1 21842 21842 4.5289 0.41224 1 4924200 51946 8388 35098 35895 60384 60384 0.012802965853325077 RFAPPPLGA 9 Unmodified _RFAPPPLGA_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MSMS AL20221201_MKP_PDAC_01 4 462.932373046875 2 463.266345 924.518136 NaN NaN NaN NaN NaN NaN NaN 14.955 1 12.428 11.928 12.928 -2.5273 0 0 0 0.84564 1 7634 7634 2.0598 1.2661 1 + 51947 18425 35099 35896 60385 60385 0.05285812342560803 RFASEKDVL 9 Unmodified _RFASEKDVL_ 0 0 0 REV__ENSG00000153404|ENST00000637938|PLEKHG4B REV__ENSG00000153404|ENST00000637938|PLEKHG4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.289794921875 2 532.790381 1063.56621 0.24914 0.00013274 -0.085434 -4.5519E-05 0.16371 8.7221E-05 532.7905978431336 45.863 0.70383 45.835 45.421 46.125 -0.028011 75 34 4 0 0 0 0.2143 1 24518 24518 21.747 0.20967 1 39346000 + 51948 21171 35100 35897 60386 60386 0.036968414719467546 RFCDNVWTF 9 Carbamidomethyl (C) _RFC(Carbamidomethyl (C))DNVWTF_ RFC(1)DNVWTF RFC(86)DNVWTF 0 1 0 ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2 ENST00000267869.8_1_15:59931333-59949661:-|nuORF ENST00000267869.8_1_15:59931333-59949661:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.779052734375 2 622.77949 1243.54443 0.61443 0.00038266 -0.20307 -0.00012647 0.41136 0.00025619 622.7795219982099 83.217 2.0959 77.042 76.044 78.139 -6.1757 306 114 3 0 0 0 0.0090524 8 54934 54263;54420;54550;54686;54813;54934;55060;55191 85.642 44.354 1 73004000 51949 5220 35101 35898 60387;60388;60389;60390;60391;60392;60393;60394 60392 537 -0.0676028654829679 RFCQREVSF 9 Unmodified _RFCQREVSF_ 0 0 0 ENSG00000115718|ENST00000234071|PROC ENSG00000115718|ENST00000234071|PROC ENSG00000115718|ENST00000234071|PROC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2900390625 2 586.287482 1170.56041 NaN NaN NaN NaN NaN NaN NaN 92.485 1 92.485 91.985 92.985 0 0 0 0 0.84564 1 51141 51141 2.0598 0 1 51950 3155 35102 35899 60395 60395 -0.018045803113636794 RFCVQPQL 8 Unmodified _RFCVQPQL_ 0 0 0 nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 nc|ENSG00000061987|Q7Z3U7-2|MON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7637939453125 2 495.763112 989.511671 0.30157 0.00014951 0.8911 0.00044177 1.1927 0.00059128 495.7635044674476 50.266 0.80441 50.266 49.859 50.664 0 89 37 4 0 0 0 0.61462 1 27645 27645 24.674 0 1 18083000 51951 845 35103 35900 60396 60396 0.016495511195330437 RFDCSDRQF 9 Carbamidomethyl (C) _RFDC(Carbamidomethyl (C))SDRQF_ RFDC(1)SDRQF RFDC(110)SDRQF 0 1 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8490905761719 3 410.848861 1229.52475 0.81143 0.00033337 -0.52747 -0.00021671 0.28396 0.00011666 410.8488296785517 28.397 0.38088 25.249 25.059 25.439 -3.1482 52 19 4 0 0 0 0.0071813 2 15800 15800;15920 111.31 64.834 1 27833000 51952 6755 35104 35901 60397;60398 60397 667 -0.08082662559058917 RFDCSDRQF 9 Carbamidomethyl (C) _RFDC(Carbamidomethyl (C))SDRQF_ RFDC(1)SDRQF RFDC(100)SDRQF 0 1 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.7694702148438 2 615.769654 1229.52475 0.51497 0.0003171 -0.0015765 -9.7075E-07 0.5134 0.00031613 615.7697857627293 28.421 0.34324 25.273 25.077 25.421 -3.1482 30 17 2 0 0 0 0.0088231 1 15825 15825 103.82 48.321 1 11177000 51953 6755 35104 35901 60399 60399 667 -0.08082662559058917 RFDDGLVHL 9 Unmodified _RFDDGLVHL_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2;nc|ENSG00000063176|Q9NRA0-5|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2830810546875 2 536.282723 1070.55089 0.11147 5.9778E-05 1.4533 0.0007794 1.5648 0.00083918 536.2834043142905 52.363 0.28572 52.363 52.223 52.508 0 31 12 3 0 0 0 0.025842 1 28970 28970 57.722 25.416 1 6201100 51954 857 35105 35902 60400 60400 0.01843974674761739 RFDDGLVHL 9 Unmodified _RFDDGLVHL_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2;nc|ENSG00000063176|Q9NRA0-5|SPHK2;nc|ENSG00000063176|Q9NRA0-4|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2830200195312 2 536.282723 1070.55089 0.29295 0.00015711 0.19196 0.00010295 0.48492 0.00026005 536.2825470078382 52.828 0.21595 52.377 52.28 52.496 -0.45173 23 10 3 0 0 0 0.13231 1 28568 28568 29.841 8.0939 1 2346800 51955 857 35105 35902 60401 60401 0.01843974674761739 RFDEARARF 9 Unmodified _RFDEARARF_ 0 0 0 ENSG00000027075|ENST00000332981|PRKCH;nc|ENSG00000027075|P24723-2|PRKCH ENSG00000027075|ENST00000332981|PRKCH ENSG00000027075|ENST00000332981|PRKCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8727111816406 3 389.872106 1166.59449 0.78171 0.00030477 0.78139 0.00030464 1.5631 0.00060941 389.872143330813 27.456 0.22014 24.42 24.299 24.519 -3.0365 17 10 2 0 0 0 0.094149 1 15223 15223 38.615 23.366 1 14810000 51956 565 35106 35903 60402 60402 0.017855841718755983 RFDEARARF 9 Unmodified _RFDEARARF_ 0 0 0 ENSG00000027075|ENST00000332981|PRKCH;nc|ENSG00000027075|P24723-2|PRKCH ENSG00000027075|ENST00000332981|PRKCH ENSG00000027075|ENST00000332981|PRKCH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.872106 1166.59449 0.1075 4.1911E-05 0.93498 0.00036452 1.0425 0.00040643 389.8723267666447 24.707 0.11441 24.731 24.666 24.78 0.024429 0.15596 7.9101E-05 NaN 38.615 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1322200 51957 565 35106 35903 0.017855841718755983 RFDEAYIYM 9 Oxidation (M) _RFDEAYIYM(Oxidation (M))_ RFDEAYIYM(1) RFDEAYIYM(69) 0 0 1 ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000481107.1_1_17:15928260-15930833:+|nuORF ENST00000481107.1_1_17:15928260-15930833:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2741088867188 2 612.273706 1222.53286 -0.054814 -3.3561E-05 -0.25195 -0.00015426 -0.30676 -0.00018782 612.2737208502461 45.261 0.374 45.261 45.055 45.429 0 47 19 3 0 0 0 0.014417 2 24710 24601;24710 69.105 56.062 1 14920000 51958 442 35107 35904 60403;60404 60404 55 -0.06950528362267505 RFDEAYIYM 9 Unmodified _RFDEAYIYM_ 0 0 0 ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000481107.1_1_17:15928260-15930833:+|nuORF ENST00000481107.1_1_17:15928260-15930833:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2779541015625 2 604.276249 1206.53795 0.1444 8.7258E-05 -0.96958 -0.0005859 -0.82518 -0.00049864 604.2763292606697 60.026 0.18116 59.535 59.471 59.652 -0.49079 13 8 2 0 0 0 0.37781 1 32689 32689 18.373 10.463 1 2672100 51959 442 35107 35905 60405 60405 -0.05706224499658674 RFDEAYIYM 9 Unmodified _RFDEAYIYM_ 0 0 0 ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000481107.1_1_17:15928260-15930833:+|nuORF ENST00000481107.1_1_17:15928260-15930833:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.2760620117188 2 604.276249 1206.53795 0.3445 0.00020817 -0.72831 -0.0004401 -0.38382 -0.00023193 604.7768965337456 66.097 0.42818 59.922 59.709 60.137 -6.1757 47 24 3 0 0 0 0.20389 2 42885 42885;43023 29.841 15.002 1 18191000 51960 442 35107 35905 60406;60407 60406 -0.05706224499658674 RFDEGPVRL 9 Unmodified _RFDEGPVRL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.5334777832031 3 363.533091 1087.57744 -0.48762 -0.00017726 0.67725 0.0002462 0.18963 6.8938E-05 363.53333834666785 41.389 0.1996 41.389 41.281 41.48 0 21 9 3 0 0 0 0.020973 1 22338 22338 49.527 5.5454 1 10510000 51961 367 35108 35906 60408 60408 0.03715663566094918 RFDEGPVRL 9 Unmodified _RFDEGPVRL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5331726074219 3 363.533091 1087.57744 -0.36752 -0.00013361 0.57638 0.00020953 0.20886 7.5928E-05 363.5333601455485 41.702 0.18735 41.395 41.308 41.495 -0.30682 20 8 3 0 0 0 0.0086904 1 22144 22144 87.258 6.5822 1 14834000 51962 367 35108 35906 60409 60409 0.03715663566094918 RFDEGPVRL 9 Unmodified _RFDEGPVRL_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8672790527344 3 363.533091 1087.57744 1.134 0.00041223 0.20016 7.2766E-05 1.3341 0.000485 363.5332932893622 46.403 0.32957 41.322 41.1 41.43 -5.0805 58 24 3 0 0 0 0.047788 1 28720 28720 35.612 4.9088 1 85010000 51963 367 35108 35906 60410 60410 0.03715663566094918 RFDEGVPRL 9 Unmodified _RFDEGVPRL_ 0 0 0 REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7955932617188 2 544.795998 1087.57744 -0.35171 -0.00019161 -0.14466 -7.8813E-05 -0.49638 -0.00027043 544.7956969038214 41.398 0.29758 41.398 41.241 41.538 0 35 14 3 0 0 0 0.082934 1 22296 22296 37.075 0 1 22729000 + 51964 21638 35109 35907 60411 60411 0.03715663566094918 RFDEGVPRL 9 Unmodified _RFDEGVPRL_ 0 0 0 REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7957153320312 2 544.795998 1087.57744 -0.57042 -0.00031076 0.4791 0.00026101 -0.091322 -4.9752E-05 544.7962754927454 41.718 0.25661 41.411 41.259 41.515 -0.30682 28 11 3 0 0 0 0.0099157 1 22086 22086 80.676 0 1 39263000 + 51965 21638 35109 35907 60412 60412 0.03715663566094918 RFDEGVPRL 9 Unmodified _RFDEGVPRL_ 0 0 0 REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7957763671875 2 544.795998 1087.57744 0.36915 0.00020111 -1.1928 -0.00064984 -0.82367 -0.00044873 544.7959535290714 46.401 0.42183 41.32 41.036 41.458 -5.0805 96 32 4 0 0 0 0.29507 1 28747 28747 17.443 0 1 124560000 + 51966 21638 35109 35907 60413 60413 0.03715663566094918 RFDEGVPRL 9 Unmodified _RFDEGVPRL_ 0 0 0 REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.795998 1087.57744 -0.57042 -0.00031076 0.4791 0.00026101 -0.091322 -4.9752E-05 544.7962754927454 41.718 0.25661 41.411 41.259 41.515 -0.30682 0.034857 0.00065992 NaN 80.676 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 39263000 + 51967 21638 35109 35907 0.03715663566094918 RFDEGVPRL 9 Unmodified _RFDEGVPRL_ 0 0 0 REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF REV__ENST00000474227.1_1_1:53685893-53686247:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 544.795998 1087.57744 0.36915 0.00020111 -1.1928 -0.00064984 -0.82367 -0.00044873 544.7959535290714 46.401 0.42183 41.32 41.036 41.458 -5.0805 -0.056514 -0.0011618 NaN 80.676 96 32 4 NaN NaN NaN NaN 0 NaN NaN 0 124560000 + 51968 21638 35109 35907 0.03715663566094918 RFDESMQVF 9 Unmodified _RFDESMQVF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7670288085938 2 579.766049 1157.51754 0.44704 0.00025918 1.2144 0.00070408 1.6615 0.00096326 579.7665268665586 55.42 0.2091 54.942 54.796 55.006 -0.47798 21 9 3 0 0 0 0.085319 1 30040 30040 36.506 11.107 1 2654400 51969 7544 35110 35908 60414 60414 -0.054913951594471655 RFDFYTEI 8 Unmodified _RFDFYTEI_ 0 0 0 REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.1781311035156 3 364.178313 1089.51311 NaN NaN NaN NaN NaN NaN NaN 34.542 1 34.351 33.851 34.851 -0.19131 0 0 0 0.97348 1 18048 18048 3.9444 0.3479 1 + 51970 22051 35111 35909 60415 60415 -0.02806536310708907 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2136840820312 3 354.213581 1059.61891 NaN NaN NaN NaN NaN NaN NaN 46.165 1 45.829 45.329 46.329 -0.33664 0 0 0 0.27852 1 24698 24698 19.626 9.552 1 51971 4536 35112 35910 60416 60416 0.091488443254093 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8170166015625 2 530.816733 1059.61891 0.21608 0.0001147 0.40234 0.00021357 0.61842 0.00032827 530.8168387841038 45.805 0.30479 45.777 45.622 45.926 -0.028015 47 14 4 0 0 0 0.07087 1 24589 24589 39.95 21.815 1 33188000 51972 4536 35112 35910 60417 60417 0.091488443254093 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.21337890625 3 354.213581 1059.61891 0.10034 3.5542E-05 0.37286 0.00013207 0.4732 0.00016761 354.2137305051735 45.812 0.35545 45.784 45.642 45.997 -0.028011 39 16 4 0 0 0 0.062454 1 24601 24601 32.898 21.999 1 20756000 51973 4536 35112 35910 60418 60418 0.091488443254093 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.214599609375 3 354.213581 1059.61891 1.6891 0.0005983 -0.0059291 -2.1002E-06 1.6832 0.0005962 354.21357746382506 51.114 0.37244 45.465 45.232 45.605 -5.649 34 22 2 0 0 0 0.062454 2 32073 32073;32205 32.898 13.536 1 37003000 51974 4536 35112 35910 60419;60420 60419 0.091488443254093 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.816650390625 2 530.816733 1059.61891 0.98185 0.00052118 0.2264 0.00012018 1.2083 0.00064136 530.8164330785971 51.09 0.40527 45.441 45.217 45.622 -5.649 69 24 4 0 0 0 0.32235 1 32193 32193 16.149 0.30192 1 88686000 51975 4536 35112 35910 60421 60421 0.091488443254093 RFDGRVVLV 9 Unmodified _RFDGRVVLV_ 0 0 0 nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;ENST00000515235.6_1_5:118788237-118827866:+|nuORF;ENST00000504811.5_1_5:118788270-118788363:+|nuORF;ENST00000511186.5_1_5:118788168-118811542:+|nuORF nc|ENSG00000133835|P51659-3|HSD17B4 nc|ENSG00000133835|P51659-3|HSD17B4 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 530.816733 1059.61891 0.98185 0.00052118 0.2264 0.00012018 1.2083 0.00064136 530.8164330785971 51.09 0.40527 45.441 45.217 45.622 -5.649 -0.22293 4.5106E-06 NaN 39.95 69 24 4 NaN NaN NaN NaN 0 NaN NaN 0 88686000 51976 4536 35112 35910 0.091488443254093 RFDNADRMF 9 Oxidation (M) _RFDNADRM(Oxidation (M))F_ RFDNADRM(1)F RFDNADRM(41)F 0 0 1 ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF ENSG00000035681|ENST00000038176|NSMAF ENSG00000035681|ENST00000038176|NSMAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5135803222656 3 396.51359 1186.51894 -0.53582 -0.00021246 0.047074 1.8665E-05 -0.48875 -0.00019379 396.5136397233339 26.029 0.20251 26.029 25.904 26.106 0 21 9 3 0 0 0 0.065007 1 13360 13360 41.347 28.474 1 2080800 51977 616 35113 35911 60422 60422 90 -0.06685761070707485 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2928466796875 2 559.293091 1116.57163 0.30961 0.00017316 -0.92237 -0.00051587 -0.61276 -0.00034271 559.2926486157788 56.975 0.44624 56.49 56.226 56.672 -0.48554 65 20 4 0 0 0 0.013041 2 30996 30891;30996 71.922 39.805 1 22041000 51978 2723 35114 35912 60423;60424 60424 0.018005650544182572 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.1971740722656 3 373.197819 1116.57163 0.13325 4.9727E-05 -0.42086 -0.00015706 -0.28762 -0.00010734 373.19756913894037 56.978 0.23406 56.492 56.349 56.583 -0.48554 17 10 2 0 0 0 0.16226 1 30976 30976 19.362 13.156 1 4025100 51979 2723 35114 35912 60425 60425 0.018005650544182572 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2936401367188 2 559.293091 1116.57163 0.68369 0.00038238 -0.22608 -0.00012644 0.45761 0.00025594 559.2930503547783 56.676 0.26136 56.607 56.458 56.72 -0.068737 33 12 4 0 0 0 0.017075 1 30817 30817 66.457 22.05 1 20540000 51980 2723 35114 35912 60426 60426 0.018005650544182572 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.1976013183594 3 373.197819 1116.57163 0.30977 0.00011561 0.11778 4.3954E-05 0.42755 0.00015956 373.1980356658218 56.638 0.12008 56.569 56.538 56.658 -0.068737 9 5 2 0 0 0 0.031062 1 30836 30836 41.956 31.156 1 2812100 51981 2723 35114 35912 60427 60427 0.018005650544182572 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.29443359375 2 559.293091 1116.57163 1.3895 0.00077713 0.2896 0.00016197 1.6791 0.0009391 559.2930036925829 86.725 0.79077 80.549 79.997 80.788 -6.1757 91 42 3 0 0 0 0.0090524 3 57199 56952;57070;57199 85.642 41.234 1 42621000 51982 2723 35114 35912 60428;60429;60430 60430 0.018005650544182572 RFDPLGHYL 9 Unmodified _RFDPLGHYL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.1983337402344 3 373.197819 1116.57163 1.7729 0.00066163 0.8739 0.00032614 2.6468 0.00098776 373.19812885446703 86.721 0.59326 80.546 80.177 80.77 -6.1757 48 31 2 0 0 0 0.0090851 2 57172 57052;57172 66.457 46.042 1 18002000 51983 2723 35114 35912 60431;60432 60432 0.018005650544182572 RFDSDVGEF 9 Unmodified _RFDSDVGEF_ 0 0 0 ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1;nc|ENSG00000232629|P05538-2|HLA-DQB2;ENSG00000232629|ENST00000437316|HLA-DQB2;nc|ENSG00000232629|P05538|HLA-DQB2;ENSG00000196126|ENST00000360004|HLA-DRB1 ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000196126|ENST00000360004|HLA-DRB1 ENSG00000196126|ENST00000360004|HLA-DRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7418212890625 2 536.240721 1070.46689 0.090718 4.8647E-05 -0.25632 -0.00013745 -0.1656 -8.8801E-05 536.2407250413821 43.975 0.25137 43.975 43.88 44.131 0 22 14 2 0 0 0 0.0086904 1 23922 23922 107.19 62.78 1 21142000 51984 9765;10577 35115 35913 60433 60433 -0.06552601212820264 RFDVHDVTL 9 Unmodified _RFDVHDVTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8614196777344 3 367.861096 1100.56146 0.45763 0.00016835 0.33795 0.00012432 0.79558 0.00029266 367.8611795463229 49.551 0.23256 49.551 49.416 49.649 0 21 9 3 0 0 0 0.4887 1 27306 27306 8.4443 5.7091 1 3448900 51985 7651 35116 35914 60434 60434 0.015199573291965862 RFDVHDVTL 9 Unmodified _RFDVHDVTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7625732421875 2 551.288005 1100.56146 0.78244 0.00043135 -0.60228 -0.00033203 0.18017 9.9323E-05 551.2880058878177 49.59 0.20778 49.59 49.441 49.649 0 21 8 3 0 0 0 0.19633 1 27281 27281 14.405 4.3315 1 4359200 51986 7651 35116 35914 60435 60435 0.015199573291965862 RFDVHDVTL 9 Unmodified _RFDVHDVTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.288005 1100.56146 0.87937 0.00048478 -1.0699 -0.00058982 -0.19052 -0.00010503 551.2875709549076 49.935 0.22162 49.542 49.451 49.672 -0.3923 -0.024117 -0.00034739 NaN 19.362 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2617700 51987 7651 35116 35914 0.015199573291965862 RFDVHDVTL 9 Unmodified _RFDVHDVTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 367.861096 1100.56146 0.80409 0.00029579 -0.72047 -0.00026503 0.083619 3.076E-05 367.8609092175409 49.944 0.1991 49.552 49.451 49.65 -0.3923 0.033696 -0.00047007 NaN 8.4443 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1577900 51988 7651 35116 35914 0.015199573291965862 RFDVHDVTL 9 Unmodified _RFDVHDVTL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 367.861096 1100.56146 1.7664 0.0006498 -0.41599 -0.00015303 1.3504 0.00049677 367.8612251760587 55.373 0.066963 49.451 49.407 49.474 -5.9211 -0.066669 -0.00013404 NaN 8.4443 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 5442200 51989 7651 35116 35914 0.015199573291965862 RFDVSSTSV 9 Unmodified _RFDVSSTSV_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2506408691406 2 499.251089 996.487624 -0.3037 -0.00015162 -0.39889 -0.00019915 -0.70259 -0.00035077 499.2510490951377 34.818 0.54995 34.818 34.56 35.11 0 58 28 3 0 0 0 0.01958 1 18345 18345 63.961 29.559 1 13250000 51990 4865 35117 35915 60436 60436 -0.010760108331396623 RFDVSSTSV 9 Unmodified _RFDVSSTSV_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS AL20221201_MKP_PDAC_01 4 499.2507934570312 2 499.251089 996.487624 NaN NaN NaN NaN NaN NaN NaN 40.018 1 35.488 34.988 35.988 -4.5294 0 0 0 0.049786 1 23837 23837 57.722 13.864 1 51991 4865 35117 35915 60437 60437 -0.010760108331396623 RFDVSSTSVF 10 Unmodified _RFDVSSTSVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7862548828125 2 572.785296 1143.55604 0.44204 0.00025319 0.81506 0.00046686 1.2571 0.00072005 572.7858477048625 55.138 0.28741 54.66 54.509 54.796 -0.47798 24 13 2 0 0 0 0.11654 1 29869 29869 43.982 24.725 1 12266000 51992 4865 35118 35916 60438 60438 -0.009997662532896356 RFDVSSTSVF 10 Unmodified _RFDVSSTSVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7861938476562 2 572.785296 1143.55604 0.32676 0.00018717 1.5803 0.00090519 1.9071 0.0010924 572.7863626930462 54.802 0.26066 54.736 54.6 54.861 -0.066936 21 12 2 0 0 0 0.11654 1 29767 29767 43.982 24.725 1 3499000 51993 4865 35118 35916 60439 60439 -0.009997662532896356 RFDVSSTSVF 10 Unmodified _RFDVSSTSVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7884521484375 2 572.785296 1143.55604 1.1483 0.00065771 1.5296 0.00087612 2.6778 0.0015338 572.7865029313391 61.728 0.32649 55.553 55.367 55.693 -6.1757 23 16 2 0 0 0 0.03037 1 39742 39742 67.838 40.209 1 25650000 51994 4865 35118 35916 60440 60440 -0.009997662532896356 RFDYKDKEF 9 Unmodified _RFDYKDKEF_ 0 0 0 ENSG00000255974|ENST00000301141|CYP2A6 ENSG00000255974|ENST00000301141|CYP2A6 ENSG00000255974|ENST00000301141|CYP2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5405883789062 3 416.540022 1246.59824 0.47379 0.00019735 0.40269 0.00016774 0.87648 0.00036509 416.54021464439836 58.585 0.28522 58.524 58.394 58.679 -0.060719 37 14 3 0 0 0 0.53557 1 31903 31903 5.2969 3.0442 1 4956400 51995 10797 35119 35917 60441 60441 -0.015197908449408715 RFDYTNSEF 9 Unmodified _RFDYTNSEF_ 0 0 0 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.75927734375 2 589.759278 1177.504 -0.10455 -6.1658E-05 -1.0656 -0.00062845 -1.1701 -0.00069011 589.7594263737598 43.606 0.24494 43.606 43.461 43.706 0 24 11 3 0 0 0 0.025842 1 23661 23661 57.722 32.323 1 27040000 51996 6361 35120 35918 60442 60442 -0.0776492966706428 RFDYTNSEF 9 Unmodified _RFDYTNSEF_ 0 0 0 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 ENSG00000155016|ENST00000332884|CYP2U1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.26171875 2 589.759278 1177.504 0.98043 0.00057822 0.28774 0.0001697 1.2682 0.00074791 589.7593073169244 49.677 0.33233 44.138 44 44.332 -5.5391 51 20 3 0 0 0 0.025842 2 31009 31009;31145 57.722 32.323 1 77774000 51997 6361 35120 35918 60443;60444 60443 -0.0776492966706428 RFEDSPSYV 9 Unmodified _RFEDSPSYV_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2555541992188 2 550.256371 1098.49819 -0.27891 -0.00015347 -0.43859 -0.00024133 -0.7175 -0.00039481 550.2554787788314 34.749 0.16926 34.749 34.695 34.864 0 13 8 2 0 0 0 0.15471 1 18375 18375 27.629 13.047 1 14012000 51998 6242 35121 35919 60445 60445 -0.0471202817871017 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2797241210938 2 592.28018 1182.54581 0.48722 0.00028857 0.022884 1.3554E-05 0.5101 0.00030212 592.279773031951 49.629 0.32869 49.629 49.465 49.793 0 33 14 3 0 0 0 0.19127 1 27332 27332 24.021 11.489 1 8594900 51999 4351 35122 35920 60446 60446 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.7142944335938 3 395.189212 1182.54581 0.43899 0.00017348 0.34756 0.00013735 0.78655 0.00031084 395.18958314463566 49.64 0.20543 49.64 49.51 49.716 0 14 8 2 0 0 0 0.20207 1 27340 27340 5.0475 0 1 2269300 52000 4351 35122 35920 60447 60447 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2811279296875 2 592.28018 1182.54581 0.86188 0.00051048 -0.023887 -1.4148E-05 0.838 0.00049633 592.2800705703478 50.076 0.36078 49.683 49.49 49.851 -0.3923 60 17 4 0 0 0 0.062454 1 26896 26896 41.956 17.935 1 52638000 52001 4351 35122 35920 60448 60448 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1893310546875 3 395.189212 1182.54581 0.85025 0.00033601 0.13177 5.2074E-05 0.98202 0.00038809 395.18925545244866 50.057 0.25935 49.665 49.532 49.791 -0.3923 36 12 4 0 0 0 0.06294 1 26920 26920 45.74 39.11 1 12348000 52002 4351 35122 35920 60449 60449 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.28076171875 2 592.28018 1182.54581 0.86956 0.00051502 0.44338 0.00026261 1.3129 0.00077763 592.2802376000385 49.73 0.25645 49.681 49.589 49.846 -0.048828 26 12 3 0 0 0 0.062454 1 26887 26887 41.956 17.935 1 3106900 52003 4351 35122 35920 60450 60450 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.1896362304688 3 395.189212 1182.54581 0.99333 0.00039256 0.10209 4.0346E-05 1.0954 0.0004329 395.1891635778084 54.735 0.39006 48.87 48.682 49.072 -5.8653 48 23 3 0 0 0 0.025842 2 34726 34726;34864 46.022 32.407 1 33485000 52004 4351 35122 35920 60451;60452 60451 -0.03816329187861811 RFEEAHFTF 9 Unmodified _RFEEAHFTF_ 0 0 0 ENSG00000131788|ENST00000393045|PIAS3;ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF ENSG00000131788|ENST00000393045|PIAS3 ENSG00000131788|ENST00000393045|PIAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.279541015625 2 592.28018 1182.54581 0.61222 0.0003626 -0.60459 -0.00035809 0.0076254 4.5164E-06 592.2795740700045 54.725 0.46314 48.859 48.656 49.119 -5.8653 66 28 3 0 0 0 0.18144 1 34750 34750 24.991 5.734 1 77112000 52005 4351 35122 35920 60453 60453 -0.03816329187861811 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.535888671875 3 409.536612 1225.58801 -0.56605 -0.00023182 -0.29322 -0.00012008 -0.85926 -0.0003519 409.536480643796 26.168 0.27642 26.168 26.026 26.303 0 48 15 4 0 0 0 0.047194 2 13406 13406;13504 46.022 38.077 1 25947000 52006 1949 35123 35921 60454;60455 60454 -0.015763537795010052 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5368957519531 3 409.536612 1225.58801 0.35593 0.00014577 0.5118 0.0002096 0.86774 0.00035537 409.5366191061785 26.196 0.20813 26.164 26.095 26.303 -0.031708 19 12 2 0 0 0 0.018061 1 13460 13460 65.474 49.199 1 14918000 52007 1949 35123 35921 60456 60456 -0.015763537795010052 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5376281738281 3 409.536612 1225.58801 -0.0036033 -1.4757E-06 0.61683 0.00025262 0.61323 0.00025114 409.8708673312454 25.958 0.1337 25.985 25.912 26.046 0.026953 10 6 2 0 0 0 0.43305 1 13467 13467 10.899 7.0226 1 3721100 52008 1949 35123 35921 60457 60457 -0.015763537795010052 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5370788574219 3 409.536612 1225.58801 0.87916 0.00036005 -0.15605 -6.3907E-05 0.72312 0.00029614 409.5365359129742 28.882 0.37193 25.728 25.528 25.9 -3.154 54 19 4 0 0 0 0.033747 2 16061 16061;16174 53.317 35.874 1 238330000 52009 1949 35123 35921 60458;60459 60458 -0.015763537795010052 RFEEKHAYF 9 Unmodified _RFEEKHAYF_ 0 0 0 ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 ENSG00000101343|ENST00000536226|CRNKL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.800048828125 2 613.80128 1225.58801 0.65307 0.00040085 -0.63661 -0.00039075 0.016458 1.0102E-05 613.8010191967834 28.898 0.20596 25.638 25.462 25.668 -3.2598 11 9 2 0 0 0 0.012024 1 16146 16146 90.135 60.294 1 32847000 52010 1949 35123 35921 60460 60460 -0.015763537795010052 RFEIWFRRRRK 11 Unmodified _RFEIWFRRRRK_ 0 0 0 ENST00000504041.1_1_5:169407-179718:+|nuORF;ENSG00000153404|ENST00000637938|PLEKHG4B ENST00000504041.1_1_5:169407-179718:+|nuORF ENST00000504041.1_1_5:169407-179718:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.4826049804688 2 825.484217 1648.95388 NaN NaN NaN NaN NaN NaN NaN 73.487 1 73.011 72.511 73.511 -0.47588 0 0 0 0.9435 1 40217 40217 0 0 1 52011 6263 35124 35922 60461 60461 0.15536192187460074 RFELEDTYI 9 Unmodified _RFELEDTYI_ 0 0 0 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF;REV__ENSG00000185722|ENST00000341657|ANKFY1 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.8639526367188 3 395.864394 1184.57135 NaN NaN NaN NaN NaN NaN NaN 94.843 1 88.667 88.167 89.167 -6.1757 0 0 0 0.71962 1 62822 62822 8.7454 6.4927 1 + 52012 29021;23521 35125 35923 60462 60462 -0.013548994560778738 RFEQKWNFFL 10 Unmodified _RFEQKWNFFL_ 0 0 0 REV__ENSG00000091106|ENST00000402280|NLRC4 REV__ENSG00000091106|ENST00000402280|NLRC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2478637695312 3 472.247062 1413.71936 0.35895 0.00016951 1.1332 0.00053513 1.4921 0.00070465 472.24758789934447 66.055 0.42297 66.055 65.793 66.216 0 66 21 4 0 0 0 0.6785 1 36848 36848 5.0475 0.3316 1 6326700 + 52013 17880 35126 35924 60463 60463 0.02904456588407811 RFETYRRYI 9 Unmodified _RFETYRRYI_ 0 0 0 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29 MSMS AL20221201_MKP_PDAC_01 4 435.2366333007812 3 435.235045 1302.6833 NaN NaN NaN NaN NaN NaN NaN 92.161 1 85.986 85.486 86.486 -6.1757 0 0 0 0.69506 1 60939 60939 9.544 0.3002 1 + 52014 17240 35127 35925 60464 60464 0.04406999411548895 RFFAFMRTF 9 Unmodified _RFFAFMRTF_ 0 0 0 REV__nc|ENSG00000290184|Q9BZS1-2|FOXP3 REV__nc|ENSG00000290184|Q9BZS1-2|FOXP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8139038085938 2 611.813136 1221.61172 2.9281 0.0017914 -3.8943 -0.0023826 -0.9662 -0.00059114 611.8106219499643 99.838 0.35149 99.801 99.666 100.02 -0.036301 45 12 5 0 0 0 0.55144 1 55563 55563 4.3292 0.38484 1 11388000 + 52015 17253 35128 35926 60465 60465 0.0097778845333778 RFFCPNNW 8 Unmodified _RFFCPNNW_ 0 0 0 ENST00000496144.5_1_8:100568863-100588008:+|nuORF ENST00000496144.5_1_8:100568863-100588008:+|nuORF ENST00000496144.5_1_8:100568863-100588008:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.8941650390625 3 361.832483 1082.47562 0.063732 2.306E-05 3.0995 0.0011215 3.1633 0.0011446 361.83399006228 34.278 0.18364 34.306 34.184 34.367 0.027401 13 8 2 0 0 0 8.7369 1 18021 18021 1.6526 0.45928 1 890570 52016 14365 35129 35927 60466 60466 -0.06231906057314518 RFFFFFFFFWQ 11 Unmodified _RFFFFFFFFWQ_ 0 0 0 ENST00000335154.9_1_12:50038759-50038969:-|nuORF ENST00000335154.9_1_12:50038759-50038969:-|nuORF ENST00000335154.9_1_12:50038759-50038969:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.4058837890625 2 833.405715 1664.79688 NaN NaN NaN NaN NaN NaN NaN 79.192 1 79.192 78.692 79.692 0 0 0 0 0.9435 1 43993 43993 0 0 1 52017 11894 35130 35928 60467 60467 -0.00892905475416228 RFFGTGFV 8 Unmodified _RFFGTGFV_ 0 0 0 REV__ENST00000356638.7_1_11:62407137-62407200:-|nuORF REV__ENST00000356638.7_1_11:62407137-62407200:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.4830932617188 1 930.483214 929.475937 0.39876 0.00037103 0.33114 0.00030812 0.7299 0.00067916 930.4834890236132 97.293 0.55611 97.293 96.972 97.528 0 67 27 3 0 0 0 0.81107 1 53721 53721 0 0 1 5511500 + 52018 25828 35131 35929 60468 60468 0.00837836934204006 RFFPYTSSQMF 11 Oxidation (M) _RFFPYTSSQM(Oxidation (M))F_ RFFPYTSSQM(1)F RFFPYTSSQM(72)F 0 0 1 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 713.82666015625 2 713.826637 1425.63872 0.69151 0.00049362 -0.27262 -0.0001946 0.41889 0.00029902 713.8266090524168 58.588 0.68926 58.527 58.274 58.964 -0.060719 103 34 4 0 0 0 0.0071133 3 31968 31862;31968;32070 71.708 59.467 1 16229000 52019 603 35132 35930 60469;60470;60471 60470 87 -0.05707192516797477 RFFPYTSSQMF 11 Unmodified _RFFPYTSSQMF_ 0 0 0 nc|ENSG00000033800|O75925-2|PIAS1;ENSG00000033800|ENST00000249636|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 nc|ENSG00000033800|O75925-2|PIAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 705.82958984375 2 705.82918 1409.64381 -0.27755 -0.0001959 0.076795 5.4204E-05 -0.20076 -0.0001417 705.829435323905 93.241 0.46228 87.066 86.823 87.285 -6.1757 81 34 3 0 0 0 0.0011228 3 61696 61564;61696;61824 81.915 52.075 1 46963000 52020 603 35132 35931 60472;60473;60474 60473 -0.04462888654188646 RFFQLNYS 8 Unmodified _RFFQLNYS_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.5335388183594 3 358.85042 1073.52943 0.62458 0.00022413 -0.57126 -0.000205 0.05332 1.9134E-05 358.8505150173472 29.74 0.21899 29.659 29.551 29.77 -0.080431 23 10 3 0 0 0 8.7369 1 15424 15424 6.2058 0 1 32778000 52021 1438 35133 35932 60475 60475 -0.004394103539425487 RFGEEILYR 9 Unmodified _RFGEEILYR_ 0 0 0 ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 ENSG00000118507|ENST00000431975|AKAP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8804016113281 3 394.880379 1181.61931 0.010863 4.2896E-06 -0.51898 -0.00020494 -0.50812 -0.00020065 394.88006946769895 39.711 0.28477 39.414 39.285 39.569 -0.29716 34 13 3 0 0 0 0.1773 1 20931 20931 18.373 6.1983 1 11385000 52022 3376 35134 35933 60476 60476 0.03576219254637181 RFGPGVAF 8 Unmodified _RFGPGVAF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.7315063476562 2 425.732138 849.449723 -0.17682 -7.5278E-05 -0.066601 -2.8354E-05 -0.24342 -0.00010363 425.73209251681493 51.433 0.27229 51.379 51.226 51.499 -0.053871 32 13 3 0 0 0 0.5284 1 27805 27805 32.117 17.535 1 12398000 + 52023 167 35135 35934 60477 60477 0.01897567762705421 RFGSHISPY 9 Unmodified _RFGSHISPY_ 0 0 0 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.266357421875 2 532.269616 1062.52468 -0.45163 -0.00024039 1.1939 0.00063545 0.74222 0.00039506 532.2667248957093 27.791 0.45719 27.791 27.488 27.945 0 43 21 3 0 0 0 0.16226 1 14311 14311 26.884 0 1 3521000 52024 9013 35136 35935 60478 60478 -0.004082944967194635 RFGSHISPY 9 Unmodified _RFGSHISPY_ 0 0 0 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 ENSG00000182070|ENST00000380367|OR52A1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 532.269616 1062.52468 0.55095 0.00029325 2.7442 0.0014607 3.2951 0.0017539 532.7740525375582 31.721 0.24388 28.025 27.947 28.19 -3.6958 0.11669 0.00060783 NaN 26.884 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 20295000 52025 9013 35136 35935 -0.004082944967194635 RFHLSWSA 8 Unmodified _RFHLSWSA_ 0 0 0 REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2586669921875 2 502.259051 1002.50355 0.28819 0.00014475 -1.5503 -0.00077865 -1.2621 -0.00063391 502.7594548075618 72.706 0.3465 72.23 72.083 72.429 -0.47588 22 15 2 0 0 0 0.80232 1 39791 39791 5.2307 0.47466 1 798410 + 52026 27845 35137 35936 60479 60479 0.0023974019441084238 RFHPTPLLL 9 Unmodified _RFHPTPLLL_ 0 0 0 nc|ENSG00000089195|Q9UJA5-4|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5557556152344 3 365.222076 1092.6444 -0.36726 -0.00013413 0.25526 9.3228E-05 -0.112 -4.0904E-05 365.2222942116976 56.234 0.28428 56.165 56.055 56.339 -0.068737 18 14 2 0 0 0 0.14 1 30579 30579 21.59 9.4154 1 3424500 52027 1520 35138 35937 60480 60480 0.10178318847874834 RFHPTPLLL 9 Unmodified _RFHPTPLLL_ 0 0 0 nc|ENSG00000089195|Q9UJA5-4|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3298950195312 2 547.329476 1092.6444 -0.28842 -0.00015786 1.406 0.00076953 1.1176 0.00061167 547.3302120620026 56.251 0.24924 56.183 56.055 56.304 -0.068741 21 12 3 0 0 0 0.06294 1 30608 30608 41.84 3.8656 1 4613200 52028 1520 35138 35937 60481 60481 0.10178318847874834 RFHPTPLLL 9 Unmodified _RFHPTPLLL_ 0 0 0 nc|ENSG00000089195|Q9UJA5-4|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3309326171875 2 547.329476 1092.6444 1.0506 0.00057502 -0.41681 -0.00022813 0.63378 0.00034689 547.3294465243728 94.026 0.18307 87.85 87.749 87.932 -6.1757 23 9 3 0 0 0 0.044011 1 62252 62252 47.749 1.7277 1 22594000 52029 1520 35138 35937 60482 60482 0.10178318847874834 RFHPTPLLL 9 Unmodified _RFHPTPLLL_ 0 0 0 nc|ENSG00000089195|Q9UJA5-4|TRMT6;ENSG00000089195|ENST00000203001|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 nc|ENSG00000089195|Q9UJA5-4|TRMT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2221374511719 3 365.222076 1092.6444 1.7704 0.00064659 -0.32758 -0.00011964 1.4428 0.00052695 365.2216017440562 93.998 0.14706 87.822 87.769 87.916 -6.1757 14 7 3 0 0 0 0.14 1 62255 62255 21.59 5.0243 1 11661000 52030 1520 35138 35937 60483 60483 0.10178318847874834 RFHTLFGL 8 Unmodified _RFHTLFGL_ 0 0 0 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7818908691406 2 495.779619 989.544686 0.51013 0.00025291 0.60792 0.00030139 1.1181 0.00055431 495.780009710178 90.794 1.1121 90.3 89.991 91.103 -0.49457 203 62 5 0 0 0 0.80975 1 50043 50043 0.79363 0 1 135250000 + 52031 22272 35139 35938 60484 60484 0.04949501233920728 RFHVLKMLLNL 11 Unmodified _RFHVLKMLLNL_ 0 0 0 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 ENSG00000198932|ENST00000537097|GPRASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.9489135742188 3 461.947959 1382.82205 0.13584 6.2752E-05 0.07328 3.3852E-05 0.20912 9.6603E-05 461.9478930244682 100.98 0.22018 100.94 100.84 101.06 -0.04216 21 7 5 0 0 0 0.7453 1 56098 56098 0 0 1 189930000 52032 10202 35140 35939 60485 60485 0.14594826055554222 RFIDAVYKL 9 Unmodified _RFIDAVYKL_ 0 0 0 ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44;CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant ENSG00000164118|ENST00000503780|CEP44 ENSG00000164118|ENST00000503780|CEP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8258666992188 2 562.826766 1123.63898 0.25343 0.00014264 -0.22669 -0.00012759 0.026739 1.505E-05 562.826652918233 55.627 0.28982 55.558 55.395 55.685 -0.068737 36 14 3 0 0 0 0.037118 2 30189 30189;30292 55.503 13.454 1 34483000 52033 7144 35141 35940 60486;60487 60486 0.08210595265359188 RFIDAVYKL 9 Unmodified _RFIDAVYKL_ 0 0 0 ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44;CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant ENSG00000164118|ENST00000503780|CEP44 ENSG00000164118|ENST00000503780|CEP44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8274536132812 2 562.826766 1123.63898 1.189 0.00066923 -1.1182 -0.00062937 0.070808 3.9853E-05 562.8267554445897 87.39 0.50556 81.214 80.858 81.364 -6.1757 58 27 3 0 0 0 0.085786 1 57628 57628 45.74 9.2337 1 23647000 52034 7144 35141 35940 60488 60488 0.08210595265359188 RFIDTGTMF 9 Unmodified _RFIDTGTMF_ 0 0 0 ENST00000230859.7_2_5:6756907-6757138:+|nuORF ENST00000230859.7_2_5:6756907-6757138:+|nuORF ENST00000230859.7_2_5:6756907-6757138:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.1803588867188 3 363.179548 1086.51682 NaN NaN NaN NaN NaN NaN NaN 90.608 1 84.432 83.932 84.932 -6.1757 0 0 0 0.7818 1 59856 59856 4.1895 1.4543 1 52035 11071 35142 35941 60489 60489 -0.02298189808470852 RFIERKYRQEL 11 Unmodified _RFIERKYRQEL_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 769.43359375 2 769.433524 1536.85249 NaN NaN NaN NaN NaN NaN NaN 45.401 1 45.401 44.901 45.901 0 0 0 0 0.94165 1 24744 24744 1.3295 0 1 52036 2960 35143 35942 60490 60490 0.10554275974300253 RFIGAPLH 8 Unmodified _RFIGAPLH_ 0 0 0 REV__ENSG00000178772|ENST00000323830|CPN2 REV__ENSG00000178772|ENST00000323830|CPN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2694702148438 2 455.766512 909.518471 0.14829 6.7587E-05 1.4586 0.00066478 1.6069 0.00073236 455.7668635578627 71.455 0.32051 71.455 71.324 71.645 0 27 14 3 0 0 0 8.7369 1 39777 39777 0.79363 0 1 1195300 + 52037 23064 35144 35943 60491 60491 0.06009232062422143 RFIGATANF 9 Unmodified _RFIGATANF_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7670288085938 2 498.766709 995.518865 1.1293 0.00056326 0.055738 2.78E-05 1.185 0.00059106 498.7667078762074 46.475 0.39071 46.441 46.246 46.637 -0.033421 59 18 4 0 0 0 0.028475 2 25051 24951;25051 56.177 22.075 1 82585000 52038 8269 35145 35944 60492;60493 60493 0.02092606991595858 RFIGATANF 9 Unmodified _RFIGATANF_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7669067382812 2 498.766709 995.518865 1.0343 0.00051588 -0.030617 -1.5271E-05 1.0037 0.00050061 498.76663946860623 52.647 0.48508 46.913 46.652 47.137 -5.7345 69 26 3 0 0 0 0.020973 3 33114 33114;33227;33363 62.573 26.528 1 267070000 52039 8269 35145 35944 60494;60495;60496 60494 0.02092606991595858 RFILNLPTF 9 Unmodified _RFILNLPTF_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.82958984375 2 560.829309 1119.64407 1.3276 0.00074459 -0.38235 -0.00021443 0.9453 0.00053015 560.8290313223438 91.183 0.39142 91.219 91.012 91.403 0.036507 43 14 4 0 0 0 0.033587 2 50775 50669;50775 68.081 61.357 1 30190000 52040 3924 35146 35945 60497;60498 60498 0.08902899127974706 RFILNLPTF 9 Unmodified _RFILNLPTF_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.82958984375 2 560.829309 1119.64407 0.46103 0.00025856 0.55997 0.00031405 1.021 0.00057261 560.8294929788248 99.819 0.22797 93.644 93.541 93.769 -6.1757 45 16 4 0 0 0 0.011291 1 66570 66570 85.272 59.873 1 428890000 52041 3924 35146 35945 60499 60499 0.08902899127974706 RFIPELINF 9 Unmodified _RFIPELINF_ 0 0 0 nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14 nc|ENSG00000087269|P78316-2|NOP14 nc|ENSG00000087269|P78316-2|NOP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.825439453125 2 574.826766 1147.63898 0.98426 0.00056578 -1.232 -0.00070819 -0.24775 -0.00014241 574.8258355458634 99.243 0.10661 93.067 92.99 93.097 -6.1757 13 5 3 0 0 0 0.0074135 1 66024 66024 110.67 62.926 1 35131000 52042 1463 35147 35946 60500 60500 0.07106595265372562 RFIPRENGVYL 11 Unmodified _RFIPRENGVYL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.5878295898438 3 455.254216 1362.74082 0.21423 9.7528E-05 0.56033 0.00025509 0.77456 0.00035262 455.58862253371376 44.585 0.31229 44.563 44.426 44.739 -0.022064 40 16 4 0 0 0 0.42115 2 23892 23892;24001 20.411 10.647 1 16084000 52043 9884 35148 35947 60501;60502 60501 0.07395841617130827 RFIPRENGVYL 11 Unmodified _RFIPRENGVYL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2552185058594 3 455.254216 1362.74082 0.92082 0.00041921 -1.8725 -0.00085245 -0.95164 -0.00043324 455.25339191642934 77.868 0.42854 71.692 71.292 71.72 -6.1757 42 24 2 0 0 0 0.5942 1 50788 50788 11.631 3.1871 1 20332000 52044 9884 35148 35947 60503 60503 0.07395841617130827 RFIPYTEEF 9 Unmodified _RFIPYTEEF_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.29736328125 2 601.298039 1200.58152 0.12776 7.6823E-05 0.30081 0.00018088 0.42858 0.0002577 601.2977372373444 59.442 0.24726 59.442 59.355 59.602 0 21 10 3 0 0 0 0.15471 1 33138 33138 27.629 13.723 1 1715500 52045 2508 35149 35948 60504 60504 -0.010742917308789401 RFIPYTEEF 9 Unmodified _RFIPYTEEF_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 601.298039 1200.58152 0.14926 8.9752E-05 -0.84732 -0.00050949 -0.69805 -0.00041974 601.297447294711 60.115 0.27502 59.625 59.471 59.746 -0.49079 0.09113 -0.00019382 NaN 27.629 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8075400 52046 2508 35149 35948 -0.010742917308789401 RFIQAHPQW 9 Unmodified _RFIQAHPQW_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8126831054688 2 591.811982 1181.60941 -0.29803 -0.00017638 1.4139 0.00083676 1.1159 0.00066039 591.8127630548967 37.099 0.27928 37.12 36.984 37.263 0.021542 38 12 4 0 0 0 0.015445 1 19652 19652 68.081 35.775 1 13598000 52047 11358 35150 35949 60505 60505 0.025870760398902348 RFIQAHPQW 9 Unmodified _RFIQAHPQW_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8778076171875 3 394.87708 1181.60941 -0.32328 -0.00012766 -0.33364 -0.00013175 -0.65692 -0.0002594 394.87729106889196 37.101 0.2355 37.123 37.005 37.24 0.021545 25 10 3 0 0 0 0.095405 1 19676 19676 24.991 20.462 1 2212200 52048 11358 35150 35949 60506 60506 0.025870760398902348 RFIQAHPQW 9 Unmodified _RFIQAHPQW_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8121948242188 2 591.811982 1181.60941 0.70046 0.00041454 -0.6051 -0.0003581 0.095362 5.6436E-05 591.8116413281645 42.047 0.31914 37.362 37.173 37.492 -4.6846 52 19 3 0 0 0 0.010611 2 25391 25252;25391 78.728 57.191 1 32676000 52049 11358 35150 35949 60507;60508 60508 0.025870760398902348 RFIQAHPQW 9 Unmodified _RFIQAHPQW_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.877197265625 3 394.87708 1181.60941 1.0499 0.0004146 -0.52157 -0.00020596 0.52836 0.00020864 394.876947205485 42.039 0.41875 37.354 37.125 37.544 -4.6846 62 26 3 0 0 0 0.019303 2 25292 25292;25429 57.722 41.573 1 22046000 52050 11358 35150 35949 60509;60510 60509 0.025870760398902348 RFISFALYL 9 Unmodified _RFISFALYL_ 0 0 0 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.32470703125 2 565.32386 1128.63317 1.7387 0.00098293 -0.51406 -0.00029061 1.2246 0.00069232 565.3234198908744 92.377 0.33483 92.407 92.184 92.519 0.030197 26 12 3 0 0 0 0.18144 1 51324 51324 24.991 14.917 1 4912000 52051 7031 35151 35950 60511 60511 0.07399496753691892 RFITWSAFF 9 Unmodified _RFITWSAFF_ 0 0 0 REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF REV__ENST00000466324.1_1_11:64444212-64481216:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2055358886719 3 392.206315 1173.59712 NaN NaN NaN NaN NaN NaN NaN 16.956 1 16.956 16.456 17.456 0 0 0 0 0.82739 1 8318 8318 2.4985 1.1688 1 + 52052 27407 35152 35951 60512 60512 0.017260395768289527 RFKALKEQRLR 11 Unmodified _RFKALKEQRLR_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.3009033203125 3 482.30016 1443.87865 -0.42396 -0.00020448 -1.6462 -0.00079398 -2.0702 -0.00099846 482.2992532103215 101.22 0.1848 101.17 101.09 101.27 -0.04216 20 6 5 0 0 0 0.74429 1 56228 56228 0.094841 0 1 25669000 52053 945 35153 35952 60513 60513 0.174465899363895 RFKDLGEEHF 10 Unmodified _RFKDLGEEHF_ 0 0 0 CON__P02769 CON__P02769 CON__P02769 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.5485534667969 3 426.547288 1276.62004 -0.051684 -2.2046E-05 -0.1752 -7.473E-05 -0.22688 -9.6776E-05 426.54759753192457 31.606 0.15825 31.606 31.523 31.681 0 10 7 2 0 0 0 0.69064 1 16491 16491 1.9064 1.1298 1 678170 + 52054 162 35154 35953 60514 60514 -0.007209860963484971 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.8026123046875 2 569.803823 1137.59309 0.85688 0.00048825 -3.0484 -0.001737 -2.1915 -0.0012487 569.8019538911987 36.539 0.21883 36.539 36.409 36.628 0 16 10 2 0 0 0 0.085319 1 19397 19397 36.506 8.0194 1 2510200 52055 5868 35155 35954 60515 60515 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.8045654296875 2 569.803823 1137.59309 -0.20749 -0.00011823 0.19708 0.0001123 -0.010407 -5.93E-06 569.8039257203509 36.74 0.26492 36.491 36.358 36.623 -0.2497 34 11 4 0 0 0 0.06294 1 19262 19262 41.84 9.5341 1 31852000 52056 5868 35155 35954 60516 60516 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.2048950195312 3 380.204974 1137.59309 -0.36663 -0.00013939 0.16495 6.2714E-05 -0.20168 -7.668E-05 380.2050076759264 36.737 0.26492 36.487 36.358 36.623 -0.2497 32 11 4 0 0 0 0.028475 1 19265 19265 51.415 29.878 1 26064000 52057 5868 35155 35954 60517 60517 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8038940429688 2 569.803823 1137.59309 -0.16353 -9.3181E-05 0.091081 5.1898E-05 -0.072451 -4.1283E-05 569.8040830894363 36.442 0.26376 36.463 36.295 36.559 0.021545 31 11 3 0 0 0 0.023481 1 19264 19264 60.074 24.03 1 15872000 52058 5868 35155 35954 60518 60518 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2049865722656 3 380.204974 1137.59309 -0.23466 -8.9217E-05 -0.16528 -6.2841E-05 -0.39994 -0.00015206 380.20507958060654 36.442 0.28462 36.463 36.295 36.58 0.021545 38 12 4 0 0 0 0.028475 1 19266 19266 59.368 31.74 1 14751000 52059 5868 35155 35954 60519 60519 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2049255371094 3 380.204974 1137.59309 1.2269 0.00046649 -0.43619 -0.00016584 0.79075 0.00030065 380.2046206965295 40.605 0.62619 36.076 35.73 36.356 -4.5294 102 38 4 0 0 0 0.10247 2 24146 24146;24285 37.075 16.332 1 93032000 52060 5868 35155 35954 60520;60521 60520 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8043212890625 2 569.803823 1137.59309 0.88158 0.00050233 0.48666 0.0002773 1.3682 0.00077963 569.8039960255649 40.581 0.53283 36.052 35.806 36.339 -4.5294 94 32 4 0 0 0 0.044011 3 24150 24150;24283;24412 47.749 17.524 1 118260000 52061 5868 35155 35954 60522;60523;60524 60522 0.029799500831359182 RFKEANNFL 9 Unmodified _RFKEANNFL_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 380.204974 1137.59309 0.58139 0.00022105 -0.86402 -0.00032851 -0.28264 -0.00010746 380.204595486511 36.551 0.19772 36.551 36.43 36.628 0 0.050746 -0.00076155 NaN 51.415 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2729600 52062 5868 35155 35954 0.029799500831359182 RFKEANNFLW 10 Unmodified _RFKEANNFLW_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2311096191406 3 442.231412 1323.67241 0.39036 0.00017263 -1.6017 -0.00070833 -1.2114 -0.0005357 442.23077148476614 54.386 0.24048 54.319 54.202 54.443 -0.066936 22 11 3 0 0 0 0.35999 1 29541 29541 23.964 12.899 1 3786900 52063 5868 35156 35955 60525 60525 0.02351597037272768 RFKEANNFLW 10 Unmodified _RFKEANNFLW_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2322692871094 3 442.231412 1323.67241 1.3331 0.00058954 -0.016874 -7.4623E-06 1.3162 0.00058208 442.5657526899058 89.281 0.37213 83.105 82.882 83.255 -6.1757 27 20 2 0 0 0 0.39689 1 58926 58926 21.799 15.608 1 11125000 52064 5868 35156 35955 60526 60526 0.02351597037272768 RFKHEKIYTY 10 Unmodified _RFKHEKIYTY_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.8722534179688 2 692.872237 1383.72992 0.29619 0.00020522 -0.33141 -0.00022963 -0.035221 -2.4404E-05 692.8720351858299 65.03 0.34534 64.546 64.36 64.705 -0.48428 53 15 5 0 0 0 0.40136 1 35532 35532 21.537 8.4945 1 16665000 52065 945 35157 35956 60527 60527 0.053404392428547 RFKHEKIYTY 10 Unmodified _RFKHEKIYTY_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.8718872070312 2 692.872237 1383.72992 0.89513 0.00062021 -0.27314 -0.00018925 0.62199 0.00043096 692.8719472528637 64.511 0.30795 64.5 64.338 64.646 -0.010529 53 15 4 0 0 0 0.46514 1 35287 35287 18.146 8.0724 1 17138000 52066 945 35157 35956 60528 60528 0.053404392428547 RFKHEKIYTY 10 Unmodified _RFKHEKIYTY_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;ENST00000563542.5_1_15:72185266-72338904:-|nuORF;nc|ENSG00000066933|B2RTY4-3|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MSMS AL20221201_MKP_PDAC_01 4 692.8743896484375 2 692.872237 1383.72992 NaN NaN NaN NaN NaN NaN NaN 73.288 1 67.112 66.612 67.612 -6.1757 0 0 0 0.28083 1 47933 47933 38.176 3.7738 1 52067 945 35157 35956 60529 60529 0.053404392428547 RFKKAPLLL 9 Unmodified _RFKKAPLLL_ 0 0 0 ENST00000440452.5_1_4:728709-759864:+|nuORF;ENSG00000185619|ENST00000362003|PCGF3;nc|ENSG00000185619|Q3KNV8-2|PCGF3 ENST00000440452.5_1_4:728709-759864:+|nuORF ENST00000440452.5_1_4:728709-759864:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.57861328125 3 362.577972 1084.71209 1.576 0.00057141 0.57243 0.00020755 2.1484 0.00077897 362.5780733667051 91.437 0.25078 85.262 85.165 85.416 -6.1757 15 13 2 0 0 0 0.35911 1 60466 60466 14.405 5.9611 1 7632500 52068 9388 35158 35957 60530 60530 0.17311768778654368 RFKKRTELF 9 Unmodified _RFKKRTELF_ 0 0 0 ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF ENSG00000161016|ENST00000528957|RPL8 ENSG00000161016|ENST00000528957|RPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.9128723144531 3 408.911902 1223.71388 1.1307 0.00046236 0.61994 0.0002535 1.7506 0.00071586 408.9121404492476 88.812 0.28731 82.636 82.459 82.746 -6.1757 27 15 2 0 0 0 0.27545 1 58587 58587 18.373 1.8072 1 9978400 52069 6779 35159 35958 60531 60531 0.11096777796592505 RFKLQWNLRHY 11 Unmodified _RFKLQWNLRHY_ 0 0 0 ENST00000577300.1_1_18:2705761-2706389:+|nuORF ENST00000577300.1_1_18:2705761-2706389:+|nuORF ENST00000577300.1_1_18:2705761-2706389:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 780.9286499023438 2 780.930951 1559.84735 NaN NaN NaN NaN NaN NaN NaN 84.014 1 83.514 83.014 84.014 -0.49961 0 0 0 0.94184 1 45980 45980 1.1933 0.88631 1 52070 15529 35160 35959 60532 60532 0.08982016902314172 RFKLRYKVS 9 Unmodified _RFKLRYKVS_ 0 0 0 REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF REV__ENST00000503413.1_1_4:81189541-81207823:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5787963867188 3 399.580264 1195.71896 NaN NaN NaN NaN NaN NaN NaN 21.432 1 21.46 20.96 21.96 0.028357 0 0 0 0.85261 1 10875 10875 1.1933 0.41681 1 + 52071 20353 35161 35960 60533 60533 0.12893081659240124 RFKPLSDKI 9 Unmodified _RFKPLSDKI_ 0 0 0 ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 ENST00000479307.5_1_3:186508099-186512490:-|nuORF ENST00000479307.5_1_3:186508099-186512490:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5575866699219 3 368.557236 1102.64988 0.11528 4.2488E-05 0.84963 0.00031314 0.96491 0.00035563 368.8919473643335 28.325 0.20539 28.355 28.262 28.467 0.029564 20 8 3 0 0 0 0.012668 1 14757 14757 67.081 26.356 1 2668700 52072 7095 35162 35961 60534 60534 0.10265997639658053 RFKPLSDKI 9 Unmodified _RFKPLSDKI_ 0 0 0 ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4 ENST00000479307.5_1_3:186508099-186512490:-|nuORF ENST00000479307.5_1_3:186508099-186512490:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5575256347656 3 368.557236 1102.64988 1.4163 0.000522 -0.18948 -6.9834E-05 1.2269 0.00045217 368.55715706007317 32.015 0.27182 28.319 28.138 28.41 -3.6958 25 14 2 0 0 0 0.021948 1 18194 18194 49.742 20.305 1 13475000 52073 7095 35162 35961 60535 60535 0.10265997639658053 RFKTHNEHL 9 Unmodified _RFKTHNEHL_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5434265136719 3 394.54399 1180.61014 0.37321 0.00014725 0.80179 0.00031634 1.175 0.00046359 394.5443168604083 14.564 0.11336 12.061 12.008 12.121 -2.5029 39 20 3 0 0 0 0.21589 1 7393 7393 21.59 8.7175 1 9011000 52074 9934 35163 35962 60536 60536 0.027058706889420137 RFLAATFLL 9 Unmodified _RFLAATFLL_ 0 0 0 nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2 nc|ENSG00000119655|P61916-2|NPC2 nc|ENSG00000119655|P61916-2|NPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.31884765625 2 526.318577 1050.6226 -0.036091 -1.8996E-05 0.5389 0.00028363 0.50281 0.00026464 526.318827487395 87.887 0.34955 87.94 87.746 88.096 0.053352 30 14 3 0 0 0 0.024189 1 48864 48864 65.235 14.38 1 57610000 52075 3449 35164 35963 60537 60537 0.09931514099275773 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.3435668945312 2 612.342781 1222.67101 0.16678 0.00010213 -1.5561 -0.00095286 -1.3893 -0.00085073 612.3416096586031 76.462 0.27437 75.982 75.787 76.061 -0.47945 31 16 2 0 0 0 0.17253 1 41804 41804 37.075 20.926 1 4539000 52076 674 35165 35964 60538 60538 0.06857962948492968 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5645141601562 3 408.564279 1222.67101 0.11938 4.8774E-05 -0.0062039 -2.5347E-06 0.11318 4.6239E-05 408.5639525540282 76.45 0.24937 75.97 75.812 76.061 -0.47945 26 15 3 0 0 0 0.027759 1 41807 41807 51.488 42.512 1 2259000 52077 674 35165 35964 60539 60539 0.06857962948492968 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.34375 2 612.342781 1222.67101 0.44651 0.00027341 -0.39225 -0.00024019 0.054257 3.3224E-05 612.3425091723722 75.87 0.4962 75.918 75.686 76.182 0.047943 88 21 6 0 0 0 0.0052757 2 41774 41774;41888 97.741 71.473 1 439500000 52078 674 35165 35964 60540;60541 60540 0.06857962948492968 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8988952636719 3 408.564279 1222.67101 -0.050478 -2.0623E-05 0.20531 8.3883E-05 0.15483 6.3259E-05 408.5643490127417 75.871 0.40176 75.918 75.707 76.109 0.047943 70 17 5 0 0 0 0.01074 2 41789 41789;41903 66.683 54.508 1 146760000 52079 674 35165 35964 60542;60543 60542 0.06857962948492968 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.343994140625 2 612.342781 1222.67101 1.1318 0.00069303 0.084701 5.1866E-05 1.2165 0.0007449 612.3427348447113 98.481 0.6849 92.305 91.891 92.576 -6.1757 135 47 4 0 0 0 0.014503 3 65212 65077;65212;65347 80.676 51.594 1 344220000 52080 674 35165 35964 60544;60545;60546 60545 0.06857962948492968 RFLDDLGLKF 10 Unmodified _RFLDDLGLKF_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5649719238281 3 408.564279 1222.67101 1.3452 0.00054961 0.11375 4.6475E-05 1.459 0.00059609 408.564235757627 98.482 0.53637 92.306 91.891 92.427 -6.1757 94 36 3 0 0 0 0.01074 3 65224 65081;65224;65359 66.683 54.508 1 160360000 52081 674 35165 35964 60547;60548;60549 60548 0.06857962948492968 RFLDFITNI 9 Unmodified _RFLDFITNI_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8165893554688 2 569.816399 1137.61824 0.18724 0.00010669 1.0154 0.00057858 1.2026 0.00068528 569.8168581121827 88.554 0.27989 88.602 88.423 88.702 0.047859 21 11 3 0 0 0 0.012668 1 49229 49229 72.968 38.566 1 22748000 52082 7549 35166 35965 60550 60550 0.054940048857361035 RFLDFITNI 9 Unmodified _RFLDFITNI_ 0 0 0 nc|ENSG00000166908|Q8TBX8-2|PIP4K2C;nc|ENSG00000166908|Q8TBX8-3|PIP4K2C;ENSG00000166908|ENST00000354947|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C nc|ENSG00000166908|Q8TBX8-2|PIP4K2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8164672851562 2 569.816399 1137.61824 1.1762 0.00067021 0.30746 0.00017519 1.4836 0.0008454 570.318349453198 99.986 0.18357 93.81 93.74 93.924 -6.1757 20 12 2 0 0 0 0.029718 1 66827 66827 55.503 21.101 1 35697000 52083 7549 35166 35965 60551 60551 0.054940048857361035 RFLDKALEL 9 Unmodified _RFLDKALEL_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8232421875 2 552.824224 1103.63389 0.55715 0.00030801 -1.2106 -0.00066926 -0.65347 -0.00036125 552.8237522252892 54.932 0.22356 54.932 54.83 55.054 0 12 9 2 0 0 0 0.10247 1 30517 30517 32.786 5.1569 1 1738200 52084 4666 35167 35966 60552 60552 0.08622291402753035 RFLDKALEL 9 Unmodified _RFLDKALEL_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8854064941406 3 368.885241 1103.63389 0.40772 0.0001504 0.056254 2.0751E-05 0.46397 0.00017115 368.8851848964703 55.394 0.35852 54.916 54.733 55.091 -0.47798 55 16 4 0 0 0 0.08691 2 30109 30002;30109 33.445 11.855 1 31578000 52085 4666 35167 35966 60553;60554 60554 0.08622291402753035 RFLDKALEL 9 Unmodified _RFLDKALEL_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8243408203125 2 552.824224 1103.63389 0.3369 0.00018625 0.34221 0.00018918 0.67911 0.00037543 552.8241866579228 55.087 0.29663 55.018 54.841 55.138 -0.068741 35 14 3 0 0 0 0.020316 1 29887 29887 63.227 15.633 1 9122700 52086 4666 35167 35966 60555 60555 0.08622291402753035 RFLDKALEL 9 Unmodified _RFLDKALEL_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8853149414062 3 368.885241 1103.63389 0.2109 7.7796E-05 0.24611 9.0786E-05 0.457 0.00016858 368.8853511267807 55.079 0.31643 55.01 54.841 55.158 -0.068737 37 15 4 0 0 0 0.044011 1 29890 29890 43.982 10.537 1 7711500 52087 4666 35167 35966 60556 60556 0.08622291402753035 RFLDKALEL 9 Unmodified _RFLDKALEL_ 0 0 0 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 ENSG00000135069|ENST00000376588|PSAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8854675292969 3 368.885241 1103.63389 1.8479 0.00068167 -0.6429 -0.00023715 1.205 0.00044452 368.88492432154055 90.693 0.80241 84.518 84.091 84.894 -6.1757 106 47 3 0 0 0 0.01958 3 59750 59750;59895;60025 59.052 16.74 1 22403000 52088 4666 35167 35966 60557;60558;60559 60557 0.08622291402753035 RFLDPRNKISF 11 Unmodified _RFLDPRNKISF_ 0 0 0 ENSG00000116489|ENST00000263168|CAPZA1 ENSG00000116489|ENST00000263168|CAPZA1 ENSG00000116489|ENST00000263168|CAPZA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.9290771484375 3 464.929733 1391.76737 1.0009 0.00046535 -0.78426 -0.00036463 0.21665 0.00010073 465.26389883678 47.128 0.24987 47.095 47.035 47.285 -0.033417 19 12 2 0 0 0 0.557 1 25408 25408 13.519 6.4816 1 8162200 52089 3222 35168 35967 60560 60560 0.08715530508470692 RFLEETNRL 9 Unmodified _RFLEETNRL_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B nc|ENSG00000158290|Q13620-3|CUL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3199462890625 2 589.319837 1176.62512 -0.55052 -0.00032443 0.3423 0.00020173 -0.20821 -0.0001227 589.320020684904 34.808 0.18697 34.808 34.695 34.882 0 17 9 2 0 0 0 0.16019 1 18382 18382 27.088 7.7264 1 2436900 52090 6576 35169 35968 60561 60561 0.04387317766304477 RFLEKAQRL 9 Unmodified _RFLEKAQRL_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;nc|ENSG00000148719|Q9NXW2-2|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.9019470214844 3 387.568135 1159.68258 NaN NaN NaN NaN NaN NaN NaN 23.412 1 23.433 22.933 23.933 0.021185 0 0 0 0.79814 1 12059 12059 6.1918 3.3486 1 52091 5958 35170 35969 60562 60562 0.10912204762507827 RFLELAGL 8 Unmodified _RFLELAGL_ 0 0 0 ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4;ENST00000484380.2_1_14:74755361-74755529:-|nuORF ENST00000553745.5_1_14:74753379-74769587:-|nuORF ENST00000553745.5_1_14:74753379-74769587:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.7745056152344 2 459.774003 917.533452 NaN NaN NaN NaN NaN NaN NaN 103.67 1 103.62 103.12 104.12 -0.047928 0 0 0 0.97444 1 57572 57572 0.79363 0 1 52092 3457 35171 35970 60563 60563 0.07138679139768556 RFLEQQNKL 9 Unmodified _RFLEQQNKL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86 ENSG00000135480|ENST00000331817|KRT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8576049804688 3 392.555895 1174.64586 0.60048 0.00023572 0.40347 0.00015838 1.0039 0.00039411 392.55589206737125 28.578 0.13485 28.516 28.445 28.58 -0.062159 5 4 2 0 0 0 0.20572 1 14779 14779 10.151 0 1 682280 + 52093 199;211;151 35172 35971 60564 60564 0.06551908145956986 RFLEQQNKL 9 Unmodified _RFLEQQNKL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENSG00000161849|ENST00000257951|KRT84;CON__Q6ISB0;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86;CON__O43790;ENSG00000205426|ENST00000327741|KRT81;CON__Q14533;CON__Q61726;ENSG00000170523|ENST00000293670|KRT83;CON__Q6NT21;CON__P78385;ENSG00000135443|ENST00000257901|KRT85;CON__P78386 ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2;ENSG00000170442|ENST00000423955|KRT86 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5559692382812 3 392.555895 1174.64586 1.3443 0.00052772 -0.23184 -9.1012E-05 1.1125 0.00043671 392.5559913041724 32.368 0.28779 28.512 28.383 28.67 -3.8562 23 16 2 0 0 0 0.45045 1 18467 18467 6.6304 0 1 7681600 + 52094 199;211;151 35172 35971 60565 60565 0.06551908145956986 RFLEYRLDW 9 Unmodified _RFLEYRLDW_ 0 0 0 ENST00000554360.5_1_14:58733385-58733508:-|nuORF ENST00000554360.5_1_14:58733385-58733508:-|nuORF ENST00000554360.5_1_14:58733385-58733508:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8842468261719 3 433.227779 1296.66151 1.2624 0.00054689 1.9609 0.00084952 3.2233 0.0013964 433.2288026018303 50.472 0.22452 50.423 50.271 50.495 -0.048824 14 10 2 0 0 0 0.21885 1 27320 27320 0.96228 0.18574 1 914990 52095 15209 35173 35972 60566 60566 0.025041946629926315 RFLFDRTSNFP 11 Unmodified _RFLFDRTSNFP_ 0 0 0 REV__ENSG00000043355|ENST00000376335|ZIC2 REV__ENSG00000043355|ENST00000376335|ZIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2423706054688 3 467.242088 1398.70443 0.27506 0.00012852 -0.18628 -8.7037E-05 0.088783 4.1483E-05 467.2419815153193 62.58 0.39561 62.558 62.375 62.771 -0.021614 67 20 4 0 0 0 0.69509 1 34256 34256 4.7159 0 1 84954000 + 52096 17212 35174 35973 60567 60567 0.02102964720415912 RFLFDRTSNFP 11 Unmodified _RFLFDRTSNFP_ 0 0 0 REV__ENSG00000043355|ENST00000376335|ZIC2 REV__ENSG00000043355|ENST00000376335|ZIC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 467.242088 1398.70443 0.38413 0.00017948 -0.35877 -0.00016763 0.025355 1.1847E-05 467.24190331248707 63.04 0.24968 62.554 62.46 62.709 -0.48617 -0.0021893 -0.0002046 NaN 4.7159 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2657600 + 52097 17212 35174 35973 0.02102964720415912 RFLFDRTSNFP 11 Unmodified _RFLFDRTSNFP_ 0 0 0 REV__ENSG00000043355|ENST00000376335|ZIC2 REV__ENSG00000043355|ENST00000376335|ZIC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 467.242088 1398.70443 0.27506 0.00012852 -0.18628 -8.7037E-05 0.088783 4.1483E-05 467.2419815153193 62.58 0.39561 62.558 62.375 62.771 -0.021614 0.0021893 3.7194E-05 NaN 4.7159 67 20 4 NaN NaN NaN NaN 0 NaN NaN 0 84954000 + 52098 17212 35174 35973 0.02102964720415912 RFLGPLHPSF 10 Unmodified _RFLGPLHPSF_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8245849609375 2 585.824558 1169.63456 0.069078 4.0467E-05 -0.12517 -7.3327E-05 -0.056092 -3.286E-05 585.8247607294943 53.507 0.17498 53.444 53.306 53.481 -0.063423 11 8 2 0 0 0 0.22237 1 29024 29024 30.637 20.563 1 1704900 52099 8699 35175 35974 60568 60568 0.05653130842438259 RFLLEGQVF 9 Unmodified _RFLLEGQVF_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125432350-125435235:-|nuORF ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7304077148438 2 554.811116 1107.60768 0.84808 0.00047052 -0.91161 -0.00050577 -0.06353 -3.5247E-05 555.3125674957696 72.632 0.20971 72.156 72.063 72.272 -0.47609 13 9 2 0 0 0 0.20358 1 39717 39717 10.074 2.1638 1 553360 52100 6082 35176 35975 60569 60569 0.05818022231278519 RFLLEGQVF 9 Unmodified _RFLLEGQVF_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37;ENST00000542400.5_1_12:125432350-125435235:-|nuORF ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8111572265625 2 554.811116 1107.60768 0.48715 0.00027028 -1.158 -0.00064246 -0.67083 -0.00037218 554.8105008583054 72.076 0.23595 72.115 71.994 72.23 0.039024 21 11 2 0 0 0 0.12357 1 39673 39673 39.95 19.496 1 5419200 52101 6082 35176 35975 60570 60570 0.05818022231278519 RFLNAENAQKF 11 Unmodified _RFLNAENAQKF_ 0 0 0 ENST00000448394.2_1_22:20110177-20114572:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1 ENST00000448394.2_1_22:20110177-20114572:+|nuORF ENST00000448394.2_1_22:20110177-20114572:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.3511962890625 2 669.351668 1336.68878 0.39365 0.00026349 0.070933 4.7479E-05 0.46458 0.00031097 669.3517346310194 34.427 0.15263 34.455 34.347 34.5 0.027401 10 6 2 0 0 0 0.72309 1 18166 18166 2.086 0 1 1046300 52102 1717 35177 35976 60571 60571 0.033906782033454874 RFLNAENAQKF 11 Unmodified _RFLNAENAQKF_ 0 0 0 ENST00000448394.2_1_22:20110177-20114572:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1 ENST00000448394.2_1_22:20110177-20114572:+|nuORF ENST00000448394.2_1_22:20110177-20114572:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2391967773438 3 446.570204 1336.68878 1.0054 0.00044898 0.4611 0.00020591 1.4665 0.00065489 446.5703386754527 39.096 0.41261 34.645 34.399 34.811 -4.4509 44 19 3 0 0 0 0.010729 2 23107 23107;23250 49.159 43.291 1 16566000 52103 1717 35177 35976 60572;60573 60572 0.033906782033454874 RFLNAENAQKF 11 Unmodified _RFLNAENAQKF_ 0 0 0 ENST00000448394.2_1_22:20110177-20114572:+|nuORF;nc|ENSG00000099901|P43487-2|RANBP1;nc|ENSG00000099901|P43487|RANBP1;ENSG00000099901|ENST00000430524|RANBP1 ENST00000448394.2_1_22:20110177-20114572:+|nuORF ENST00000448394.2_1_22:20110177-20114572:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 446.570204 1336.68878 -0.33697 -0.00015048 0.84848 0.00037891 0.51151 0.00022843 446.57041527716694 34.637 0.18986 34.446 34.351 34.541 -0.19131 -0.09976 0.0003825 NaN 49.159 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2757600 52104 1717 35177 35976 0.033906782033454874 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.579345703125 3 456.578811 1366.7146 0.16501 7.5339E-05 0.8229 0.00037572 0.98791 0.00045106 456.57914945301764 68.808 0.24132 68.327 68.202 68.443 -0.48071 15 10 2 0 0 0 0.53952 1 37630 37630 11.631 10.302 1 839380 52105 10682 35178 35977 60574 60574 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.9132690429688 3 456.578811 1366.7146 0.74428 0.00033982 0.16709 7.6289E-05 0.91137 0.00041611 456.5788703485079 68.289 0.45508 68.314 68.127 68.582 0.025146 86 22 6 0 0 0 0.056186 2 37448 37448;37557 39.923 34.52 1 151470000 52106 10682 35178 35977 60575;60576 60575 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.3638305664062 2 684.364579 1366.7146 0.65757 0.00045002 0.3647 0.00024959 1.0223 0.00069961 684.3647919696676 68.273 0.37122 68.298 68.148 68.519 0.025154 65 18 5 0 0 0 0.0071133 2 37469 37469;37579 71.708 51.293 1 51613000 52107 10682 35178 35977 60577;60578 60577 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.578369140625 3 456.578811 1366.7146 1.2784 0.00058369 -0.2685 -0.00012259 1.0099 0.00046109 456.57874118125255 96.149 1.3688 89.973 89.801 91.17 -6.1757 222 81 4 0 0 0 9.0947E-09 6 63634 63634;63761;63888;64024;64149;64270 89.609 70.887 1 159920000 52108 10682 35178 35977 60579;60580;60581;60582;60583;60584 60579 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.365478515625 2 684.364579 1366.7146 1.4886 0.0010188 -0.65962 -0.00045142 0.82902 0.00056735 684.3640792776773 96.163 1.1424 89.987 89.817 90.96 -6.1757 172 68 4 0 0 0 1.3203E-08 6 63652 63652;63773;63902;64025;64151;64268 107.1 74.314 1 94571000 52109 10682 35178 35977 60585;60586;60587;60588;60589;60590 60585 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.5788269042969 3 456.578811 1366.7146 NaN NaN NaN NaN NaN NaN NaN 97.185 1 91.01 90.51 91.51 -6.1757 0 0 0 0.039465 1 64410 64410 53.798 45.512 1 52110 10682 35178 35977 60591 60591 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 684.364501953125 2 684.364579 1366.7146 NaN NaN NaN NaN NaN NaN NaN 97.283 1 91.107 90.607 91.607 -6.1757 0 0 0 0.32157 1 64472 64472 32.037 12.676 1 52111 10682 35178 35977 60592 60592 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.5798034667969 3 456.578811 1366.7146 NaN NaN NaN NaN NaN NaN NaN 97.432 1 91.256 90.756 91.756 -6.1757 0 0 0 0.01405 1 64570 64570 60.943 50.044 1 52112 10682 35178 35977 60593 60593 0.04591572445656311 RFLNDPGHLLW 11 Unmodified _RFLNDPGHLLW_ 0 0 0 ENST00000498414.5_1_6:30314081-30314584:+|nuORF;ENST00000473266.1_1_6:30313175-30314584:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21 ENST00000498414.5_1_6:30314081-30314584:+|nuORF ENST00000498414.5_1_6:30314081-30314584:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 683.8214111328125 2 684.364579 1366.7146 1.737 0.0011887 -2.6026 -0.0017811 -0.86561 -0.00059239 684.8650710438152 97.363 0.18021 91.187 91.099 91.279 -6.1757 14 9 3 0 0 0 0.28167 1 64565 64565 13.615 7.883 1 9453500 52113 10682 35178 35977 60594 60594 0.04591572445656311 RFLNSSNDHRF 11 Unmodified _RFLNSSNDHRF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2275390625 3 464.897092 1391.66945 NaN NaN NaN NaN NaN NaN NaN 24.238 1 24.236 23.736 24.736 -0.0016766 0 0 0 0.93627 1 12382 12382 5.1984 4.5008 1 52114 2874 35179 35978 60595 60595 -0.010722780875539684 RFLNSSNDHRF 11 Unmodified _RFLNSSNDHRF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2310791015625 3 464.897092 1391.66945 0.22311 0.00010372 -1.1704 -0.00054414 -0.94733 -0.00044041 465.23035632520146 23.965 0.17316 23.986 23.863 24.036 0.021185 13 7 2 0 0 0 0.034488 1 12335 12335 54.259 40.088 1 4288400 52115 2874 35179 35978 60596 60596 -0.010722780875539684 RFLNSSNDHRF 11 Unmodified _RFLNSSNDHRF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.8971862792969 3 464.897092 1391.66945 0.42548 0.0001978 -0.75344 -0.00035027 -0.32797 -0.00015247 464.8967223123255 27.512 0.12377 24.476 24.395 24.519 -3.0365 8 5 2 0 0 0 0.019307 1 15265 15265 57.885 20.634 1 9484700 52116 2874 35179 35978 60597 60597 -0.010722780875539684 RFLNTTFSF 9 Unmodified _RFLNTTFSF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7954711914062 2 566.792924 1131.57129 1.2943 0.00073362 -0.086448 -4.8998E-05 1.2079 0.00068463 566.7929717406732 95.243 0.28981 89.067 88.872 89.162 -6.1757 19 15 2 0 0 0 0.05483 1 63048 63048 43.772 14.691 1 7275800 52117 10766 35180 35979 60598 60598 0.01077145334556917 RFLPALGWP 9 Unmodified _RFLPALGWP_ 0 0 0 REV__ENST00000567322.1_1_16:30665560-30666759:+|nuORF REV__ENST00000567322.1_1_16:30665560-30666759:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8032836914062 2 528.803094 1055.59164 NaN NaN NaN NaN NaN NaN NaN 20.596 1 20.624 20.124 21.124 0.028357 0 0 0 0.85737 1 10429 10429 0.6015 0 1 + 52118 21347 35181 35980 60599 60599 0.06606360785031029 RFLPHGQLLF 10 Unmodified _RFLPHGQLLF_ 0 0 0 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.9043579101562 3 409.904747 1226.69241 NaN NaN NaN NaN NaN NaN NaN 60.077 1 60.024 59.524 60.524 -0.053062 0 0 0 0.68942 1 32760 32760 10.899 8.8129 1 52119 3893 35182 35981 60600 60600 0.08813392767888217 RFLPHGQLLF 10 Unmodified _RFLPHGQLLF_ 0 0 0 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.9059753417969 3 409.904747 1226.69241 1.289 0.00052839 0.25131 0.00010301 1.5404 0.0006314 409.9049169918279 95.23 0.19074 89.054 88.949 89.14 -6.1757 24 10 3 0 0 0 0.40136 1 63075 63075 14.218 12.476 1 13382000 52120 3893 35182 35981 60601 60601 0.08813392767888217 RFLPHGQLLF 10 Unmodified _RFLPHGQLLF_ 0 0 0 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 ENSG00000125843|ENST00000615891|AP5S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.354248046875 2 614.353483 1226.69241 1.0367 0.00063692 -1.0912 -0.00067036 -0.054431 -3.344E-05 614.3524416422149 95.253 0.15082 89.077 88.969 89.12 -6.1757 20 8 3 0 0 0 0.11824 1 63088 63088 43.772 24.41 1 13163000 52121 3893 35182 35981 60602 60602 0.08813392767888217 RFLPSPVVI 9 Unmodified _RFLPSPVVI_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3187255859375 2 514.318577 1026.6226 0.62077 0.00031927 -0.73997 -0.00038058 -0.1192 -6.1308E-05 514.3179266223552 70.112 0.35648 70.148 69.98 70.336 0.035507 44 17 3 0 0 0 0.25681 2 38677 38571;38677 19.257 5.6148 1 15570000 52122 621 35183 35982 60603;60604 60604 0.11035514099285137 RFLPSPVVI 9 Unmodified _RFLPSPVVI_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3187866210938 2 514.318577 1026.6226 1.3035 0.00067043 -2.1445 -0.001103 -0.84099 -0.00043254 514.3182731945778 95.705 0.46467 89.529 89.195 89.66 -6.1757 71 28 3 0 0 0 0.094149 1 63381 63381 34.402 12.655 1 62803000 52123 621 35183 35982 60605 60605 0.11035514099285137 RFLQESNVL 9 Unmodified _RFLQESNVL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2354736328125 2 553.303655 1104.59276 0.036174 2.0015E-05 -1.0375 -0.00057408 -1.0014 -0.00055406 553.3029718960231 48.866 0.20774 48.866 48.761 48.969 0 12 9 2 0 0 0 0.17729 1 26862 26862 21.537 5.6898 1 1822200 52124 7784 35184 35983 60606 60606 0.04464530363270569 RFLQESNVL 9 Unmodified _RFLQESNVL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.234130859375 2 553.303655 1104.59276 1.167 0.00064573 -0.52586 -0.00029096 0.64118 0.00035477 553.3033961433431 55.357 0.37907 49.436 49.208 49.587 -5.9211 38 23 2 0 0 0 0.10271 1 35120 35120 39.95 10.868 1 28536000 52125 7784 35184 35983 60607 60607 0.04464530363270569 RFLSFPLPPA 10 Unmodified _RFLSFPLPPA_ 0 0 0 ENST00000482704.1_1_2:96688855-96689146:-|nuORF;ENST00000484440.5_1_2:96688852-96698107:-|nuORF ENST00000482704.1_1_2:96688855-96689146:-|nuORF ENST00000482704.1_1_2:96688855-96689146:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.221923828125 3 382.221965 1143.64407 1.4407 0.00055068 0.25457 9.7301E-05 1.6953 0.00064798 382.22199959011726 88.792 0.38918 82.616 82.407 82.796 -6.1757 46 21 3 0 0 0 0.55245 1 58559 58559 13.615 1.4401 1 21981000 52126 14110 35185 35984 60608 60608 0.07798899127988079 RFLSGIINF 9 Unmodified _RFLSGIINF_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8055419921875 2 533.805834 1065.59712 0.35393 0.00018893 -1.3761 -0.00073458 -1.0222 -0.00054566 533.804809157143 80.577 0.29291 80.634 80.495 80.788 0.057587 23 11 3 0 0 0 0.078314 1 44518 44518 38.176 3.7738 1 9405300 52127 5481 35186 35985 60609 60609 0.06694039576859723 RFLTPSELLF 10 Unmodified _RFLTPSELLF_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-3|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8463134765625 2 611.845156 1221.67576 0.33696 0.00020617 1.8906 0.0011568 2.2276 0.0013629 611.8458673339488 99.728 0.23565 93.553 93.416 93.652 -6.1757 20 15 2 0 0 0 0.051223 1 66506 66506 57.722 17.772 1 23126000 52128 5275 35187 35986 60610 60610 0.07378847091285934 RFLTSQQLF 9 Unmodified _RFLTSQQLF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.313720703125 2 570.314023 1138.61349 0.36196 0.00020643 -0.92535 -0.00052774 -0.56339 -0.00032131 570.3134541575586 60.49 0.16389 60.446 60.351 60.515 -0.04351 11 7 2 0 0 0 0.094905 1 33011 33011 43.772 23.319 1 4009900 52129 944 35188 35987 60611 60611 0.04973120742943138 RFLVKSHYI 9 Unmodified _RFLVKSHYI_ 0 0 0 nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 nc|ENSG00000181827|Q2KHR2-1|RFX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2290344238281 3 388.229231 1161.66586 -0.30074 -0.00011676 -0.031502 -1.223E-05 -0.33224 -0.00012899 388.2293149555341 31.521 0.23804 31.551 31.432 31.67 0.030106 23 10 3 0 0 0 0.032796 1 16505 16505 42.312 35.689 1 8694700 52130 8999 35189 35988 60612 60612 0.09149703876573767 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.1834411621094 3 375.183293 1122.52805 0.18246 6.8455E-05 -0.27714 -0.00010398 -0.094685 -3.5524E-05 375.18333521283813 51.119 0.20263 50.705 50.576 50.778 -0.41351 25 9 3 0 0 0 0.098164 1 27521 27521 33.445 24.699 1 3725000 52131 1235 35190 35989 60613 60613 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2730102539062 2 562.271301 1122.52805 0.3588 0.00020174 0.20199 0.00011357 0.56078 0.00031531 562.2718102388047 51.102 0.20055 50.689 50.597 50.798 -0.41351 17 9 2 0 0 0 0.171 1 27530 27530 21.537 4.5947 1 7317900 52132 1235 35190 35989 60614 60614 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.1836547851562 3 375.183293 1122.52805 0.68923 0.00025859 -0.68846 -0.0002583 0.00077086 2.8921E-07 375.18311131974605 50.714 0.23589 50.66 50.53 50.766 -0.053871 33 11 4 0 0 0 0.098164 1 27404 27404 33.445 25.289 1 6971200 52133 1235 35190 35989 60615 60615 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2720947265625 2 562.271301 1122.52805 0.91118 0.00051233 -1.2669 -0.00071233 -0.3557 -0.0002 562.2706220151932 56.562 0.46766 50.585 50.375 50.843 -5.9769 75 26 4 0 0 0 0.12357 1 36025 36025 32.786 21.145 1 147030000 52134 1235 35190 35989 60616 60616 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1841125488281 3 375.183293 1122.52805 1.2487 0.00046851 -0.46067 -0.00017284 0.78807 0.00029567 375.18315390224654 56.576 0.39808 50.599 50.375 50.773 -5.9769 57 22 3 0 0 0 0.044042 2 36028 36028;36159 47.732 33.327 1 87909000 52135 1235 35190 35989 60617;60618 60617 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1826477050781 3 375.183293 1122.52805 1.0457 0.00039234 -0.96813 -0.00036323 0.077605 2.9116E-05 375.1826729359557 77.447 1.627 71.272 70.431 72.058 -6.1757 127 91 2 0 0 0 0.026499 8 50371 50161;50257;50371;50501;50625;50755;51014;51145 57.249 39.986 1 14585000 52136 1235 35190 35989 60619;60620;60621;60622;60623;60624;60625;60626 60621 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2709350585938 2 562.271301 1122.52805 0.69918 0.00039313 -0.33159 -0.00018644 0.36759 0.00020668 562.2710428928057 78.432 1.6443 72.256 71.221 72.865 -6.1757 174 96 2 0 0 0 0.030212 7 51512 50738;50857;50989;51116;51247;51369;51512 66.457 41.057 1 41868000 52137 1235 35190 35989 60627;60628;60629;60630;60631;60632;60633 60633 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1827087402344 3 375.183293 1122.52805 0.86047 0.00032283 -1.4212 -0.00053321 -0.56072 -0.00021037 375.18247345651565 78.475 0.87092 72.299 72.008 72.879 -6.1757 85 52 2 0 0 0 0.026499 3 51423 51423;51572;51753 57.249 43.343 1 32378000 52138 1235 35190 35989 60634;60635;60636 60634 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 375.1833801269531 3 375.183293 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.22 1 70.045 69.545 70.545 -6.1757 0 0 0 0.20097 1 49860 49860 30.703 17.831 1 52139 1235 35190 35989 60637 60637 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.2703247070312 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.273 1 70.098 69.598 70.598 -6.1757 0 0 0 0.1598 1 49892 49892 45.7 15.475 1 52140 1235 35190 35989 60638 60638 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 375.1820678710938 3 375.183293 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.46 1 70.285 69.785 70.785 -6.1757 0 0 0 0.097684 1 50012 50012 43.982 32.487 1 52141 1235 35190 35989 60639 60639 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.2708740234375 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.465 1 70.289 69.789 70.789 -6.1757 0 0 0 0.17147 1 50015 50015 43.772 24.515 1 52142 1235 35190 35989 60640 60640 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.2713012695312 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.639 1 70.464 69.964 70.964 -6.1757 0 0 0 0.11693 1 50130 50130 51.63 26.23 1 52143 1235 35190 35989 60641 60641 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.27099609375 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 76.834 1 70.659 70.159 71.159 -6.1757 0 0 0 0.083147 1 50254 50254 60.074 29.849 1 52144 1235 35190 35989 60642 60642 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.271240234375 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 77.015 1 70.839 70.339 71.339 -6.1757 0 0 0 0.083147 1 50370 50370 60.074 34.675 1 52145 1235 35190 35989 60643 60643 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.2698364257812 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 77.193 1 71.017 70.517 71.517 -6.1757 0 0 0 0.083147 1 50487 50487 60.074 32.445 1 52146 1235 35190 35989 60644 60644 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 562.271728515625 2 562.271301 1122.52805 NaN NaN NaN NaN NaN NaN NaN 77.376 1 71.2 70.7 71.7 -6.1757 0 0 0 0.055406 1 50611 50611 60.074 29.437 1 52147 1235 35190 35989 60645 60645 -0.028313677143842142 RFMDGHITF 9 Unmodified _RFMDGHITF_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MSMS AL20221201_MKP_PDAC_01 4 375.1824340820312 3 375.183293 1122.52805 NaN NaN NaN NaN NaN NaN NaN 78.329 1 72.153 71.653 72.653 -6.1757 0 0 0 0.024286 1 51266 51266 73.196 44.702 1 52148 1235 35190 35989 60646 60646 -0.028313677143842142 RFMDGHITF 9 Oxidation (M) _RFM(Oxidation (M))DGHITF_ RFM(1)DGHITF RFM(50)DGHITF 0 0 1 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2694702148438 2 570.268758 1138.52296 0.28274 0.00016124 0.10494 5.9845E-05 0.38769 0.00022109 570.2689244258976 40.961 0.28322 40.959 40.792 41.075 -0.0017929 46 13 4 0 0 0 0.040683 1 21815 21815 49.554 27.102 1 25971000 52149 1235 35190 35990 60647 60647 206 -0.04075671576993045 RFMDGHITF 9 Oxidation (M) _RFM(Oxidation (M))DGHITF_ RFM(1)DGHITF RFM(60)DGHITF 0 0 1 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2694702148438 2 570.268758 1138.52296 0.67696 0.00038605 0.53513 0.00030517 1.2121 0.00069121 570.2687597827921 45.44 0.85674 40.485 40.207 41.064 -4.9549 188 57 4 0 0 0 0.023481 2 28014 27739;28014 60.074 33.19 1 166800000 52150 1235 35190 35990 60648;60649 60649 206 -0.04075671576993045 RFMEETANF 9 Oxidation (M) _RFM(Oxidation (M))EETANF_ RFM(1)EETANF RFM(66)EETANF 0 0 1 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7540893554688 2 580.755681 1159.49681 -0.42266 -0.00024546 -0.46073 -0.00026757 -0.88338 -0.00051303 580.755462316013 34.791 0.37896 34.791 34.54 34.919 0 54 19 4 0 0 0 0.017075 1 18283 18283 66.457 38.828 1 10817000 52151 8479 35191 35991 60650 60650 1438 -0.07655985539145149 RFMEETANF 9 Unmodified _RFMEETANF_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.758544921875 2 572.758223 1143.50189 1.1858 0.00067918 -1.3096 -0.00075007 -0.12377 -7.089E-05 572.7576530019403 50.407 0.30478 44.868 44.68 44.985 -5.5391 51 19 4 0 0 0 0.036857 1 31604 31604 51.63 19.324 1 20989000 52152 8479 35191 35992 60651 60651 -0.06411681676513581 RFMPELPLPW 10 Unmodified _RFMPELPLPW_ 0 0 0 ENST00000325942.10_1_4:78978964-79158713:+|nuORF ENST00000325942.10_1_4:78978964-79158713:+|nuORF ENST00000325942.10_1_4:78978964-79158713:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3423461914062 2 643.341726 1284.6689 1.1059 0.00071147 0.9439 0.00060725 2.0498 0.0013187 643.3415315540722 100.76 0.081154 94.581 94.541 94.623 -6.1757 7 5 2 0 0 0 0.10424 1 67477 67477 45.7 19.431 1 35445000 52153 11814 35192 35993 60652 60652 0.03795210939051685 RFMWWVRPAYF 11 Unmodified _RFMWWVRPAYF_ 0 0 0 REV__ENSG00000128311|ENST00000249042|TST REV__ENSG00000128311|ENST00000249042|TST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 780.39453125 2 779.892449 1557.77035 0.071985 5.6141E-05 0.52467 0.00040918 0.59665 0.00046532 780.3946138248162 95.449 0.14406 95.081 94.968 95.112 -0.36814 10 6 2 0 0 0 0.7453 1 52132 52132 0 0 1 357250 + 52154 19607 35193 35994 60653 60653 0.013770823616368943 RFMYIGRNQ 9 Unmodified _RFMYIGRNQ_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.3134765625 2 592.8033 1183.59205 1.4698 0.00087132 -0.83212 -0.00049328 0.63771 0.00037804 592.8027666810285 100.86 0.17786 94.688 94.57 94.748 -6.1757 17 11 2 0 0 0 0.18882 1 67511 67511 15.847 8.558 1 126840000 + 52155 22217 35194 35995 60654 60654 0.007594124425850168 RFNRYPLII 9 Unmodified _RFNRYPLII_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.9044189453125 3 397.904747 1190.69241 0.071509 2.8454E-05 -0.1467 -5.8372E-05 -0.07519 -2.9918E-05 397.90459723908447 56.587 0.33925 56.518 56.36 56.699 -0.068737 30 16 2 0 0 0 0.06187 1 30774 30774 31.268 19.041 1 5459100 52156 9907 35195 35996 60655 60655 0.10469392767890895 RFNRYPLII 9 Unmodified _RFNRYPLII_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.9044189453125 3 397.904747 1190.69241 0.53989 0.00021482 0.24484 9.7423E-05 0.78473 0.00031225 397.9046824608211 92.918 0.31116 86.742 86.56 86.871 -6.1757 34 19 2 0 0 0 0.042911 2 61396 61396;61553 36.506 19.637 1 22731000 52157 9907 35195 35996 60656;60657 60656 0.10469392767890895 RFNYWSRST 9 Unmodified _RFNYWSRST_ 0 0 0 REV__ENST00000446284.5_3_9:115933982-115935770:-|nuORF REV__ENST00000446284.5_3_9:115933982-115935770:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8671264648438 3 406.200111 1215.5785 1.2402 0.00050378 1.0681 0.00043385 2.3083 0.00093764 406.2004269582636 81.434 0.2397 81.494 81.371 81.61 0.059929 10 8 2 0 0 0 0.2188 1 45056 45056 1.0715 0.83562 1 1011300 + 52158 27138 35196 35997 60658 60658 -0.020661220650026735 RFPASTFFW 9 Unmodified _RFPASTFFW_ 0 0 0 ENSG00000185803|ENST00000643944|SLC52A2;ENSG00000132517|ENST00000254853|SLC52A1;ENST00000575919.1_1_17:4936703-4937901:-|nuORF;ENST00000573674.1_1_17:4936254-4937771:-|nuORF ENSG00000185803|ENST00000643944|SLC52A2 ENSG00000185803|ENST00000643944|SLC52A2 MSMS AL20221201_MKP_PDAC_01 4 579.7919921875 2 579.790184 1157.56581 NaN NaN NaN NaN NaN NaN NaN 99.072 1 92.896 92.396 93.396 -6.1757 0 0 0 0.25233 1 65869 65869 27.629 11.782 1 52159 9414 35197 35998 60659 60659 -0.0066653345725171675 RFPEELTQTF 10 Unmodified _RFPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3197631835938 2 634.319502 1266.62445 0.18072 0.00011463 1.5498 0.00098306 1.7305 0.0010977 634.3200998388112 61.467 0.39157 61.467 61.123 61.514 0 27 17 2 0 0 0 0.51539 1 34279 34279 17.443 5.9479 1 526270 52160 10781 35198 35999 60660 60660 0.0018047832654701779 RFPEELTQTF 10 Unmodified _RFPEELTQTF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3190307617188 2 634.319502 1266.62445 0.17873 0.00011337 0.23487 0.00014898 0.4136 0.00026236 634.3198163858232 61.967 1.3027 61.48 60.903 62.206 -0.48764 142 61 3 0 0 0 0.077181 5 33779 33579;33677;33779;33890;34015 51.415 22.921 1 4320900 52161 10781 35198 35999 60661;60662;60663;60664;60665 60663 0.0018047832654701779 RFPIFKACF 9 Carbamidomethyl (C) _RFPIFKAC(Carbamidomethyl (C))F_ RFPIFKAC(1)F RFPIFKAC(59)F 0 1 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8804016113281 3 395.879433 1184.61647 1.3215 0.00052314 -1.2154 -0.00048115 0.10606 4.1987E-05 395.8793583901951 92.002 0.22937 85.826 85.723 85.952 -6.1757 28 13 3 0 0 0 0.024189 1 60802 60802 59.368 53.966 1 18114000 52162 440 35199 36000 60666 60666 24 0.031546725960879485 RFPIFKACF 9 Carbamidomethyl (C) _RFPIFKAC(Carbamidomethyl (C))F_ RFPIFKAC(1)F RFPIFKAC(78)F 0 1 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3163452148438 2 593.315512 1184.61647 0.90467 0.00053675 -0.29508 -0.00017507 0.60959 0.00036168 593.3156453795808 91.992 0.14968 85.816 85.723 85.872 -6.1757 13 8 2 0 0 0 0.010818 1 60813 60813 78.149 55.413 1 15688000 52163 440 35199 36000 60667 60667 24 0.031546725960879485 RFPLPTYLH 9 Unmodified _RFPLPTYLH_ 0 0 0 REV__ENSG00000100347|ENST00000350028|SAMM50 REV__ENSG00000100347|ENST00000350028|SAMM50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8812255859375 3 381.881831 1142.62366 -0.55086 -0.00021036 -1.8821 -0.00071875 -2.433 -0.00092911 381.88100491917237 14.87 0.049683 14.839 14.817 14.867 -0.030868 21 15 2 0 0 0 0.61256 1 7269 7269 0.26902 0 1 399040 + 52164 18048 35200 36001 60668 60668 0.05805728468158122 RFPMLHYNMA 10 Unmodified _RFPMLHYNMA_ 0 0 0 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 REV__nc|ENSG00000197705|Q9P2G3-2|KLHL14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2066955566406 3 427.207333 1278.60017 -0.28302 -0.00012091 -0.12289 -5.2498E-05 -0.40591 -0.00017341 427.5417166163937 23.529 0.25863 23.529 23.347 23.605 0 18 12 2 0 0 0 0.70895 1 11977 11977 1.9064 0 1 477920 + 52165 23954 35201 36002 60669 60669 -0.02798776632289446 RFPNFTNQL 9 Unmodified _RFPNFTNQL_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7960205078125 2 568.795998 1135.57744 0.9198 0.00052318 0.18954 0.00010781 1.1093 0.00063099 568.7963607147631 57.993 0.41646 57.927 57.694 58.111 -0.066036 31 20 2 0 0 0 0.12424 1 31572 31572 30.637 8.8899 1 2648000 52166 7776 35202 36003 60670 60670 0.015076635660989268 RFPRTIHMTF 10 Unmodified _RFPRTIHMTF_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000465121.5_1_3:52018080-52021658:+|nuORF;ENST00000497128.1_1_3:52019461-52020636:+|nuORF nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.9013366699219 3 435.901008 1304.6812 1.0081 0.00043942 0.3277 0.00014284 1.3358 0.00058226 435.90115339085133 89.996 0.71321 83.82 83.562 84.275 -6.1757 72 40 2 0 0 0 0.34306 3 59366 59366;59503;59665 24.957 16.205 1 15233000 52167 10721 35203 36004 60671;60672;60673 60671 0.04104247402074179 RFPTCFPSF 9 Carbamidomethyl (C) _RFPTC(Carbamidomethyl (C))FPSF_ RFPTC(1)FPSF RFPTC(69)FPSF 0 1 0 nc|ENSG00000053900|Q9UJX5-2|ANAPC4;ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 nc|ENSG00000053900|Q9UJX5-2|ANAPC4 nc|ENSG00000053900|Q9UJX5-2|ANAPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7745361328125 2 579.773677 1157.5328 0.85874 0.00049787 0.53427 0.00030975 1.393 0.00080763 579.7737768248742 70.156 0.33867 70.192 70.04 70.379 0.035507 35 16 3 0 0 0 0.014417 1 38613 38613 69.105 46.369 1 4151100 52168 750 35204 36005 60674 60674 61 -0.039664835716166635 RFPWLLFA 8 Unmodified _RFPWLLFA_ 0 0 0 ENSG00000187701|ENST00000460972|OR2T27 ENSG00000187701|ENST00000460972|OR2T27 ENSG00000187701|ENST00000460972|OR2T27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.534423828125 3 350.535884 1048.58582 NaN NaN NaN NaN NaN NaN NaN 23.043 1 23.043 22.543 23.543 0 0 0 0 0.97444 1 11736 11736 0.45834 0 1 52169 9583 35205 36006 60675 60675 0.06347262273357046 RFQAIITTF 9 Unmodified _RFQAIITTF_ 0 0 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000569225.5_1_16:53269177-53281416:+|nuORF nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8123779296875 2 548.811116 1095.60768 0.65662 0.00036036 0.48461 0.00026596 1.1412 0.00062632 548.8113605766083 66.983 0.26595 67.001 66.857 67.123 0.018036 27 12 3 0 0 0 0.076472 1 36742 36742 49.933 11.959 1 3839200 52170 8666 35206 36007 60676 60676 0.06370022231271832 RFQEKFFIF 9 Unmodified _RFQEKFFIF_ 0 0 0 nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2 nc|ENSG00000078043|O75928-3|PIAS2 nc|ENSG00000078043|O75928-3|PIAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.228515625 3 421.229119 1260.66553 0.13138 5.5342E-05 -0.030807 -1.2977E-05 0.10057 4.2365E-05 421.2291411330753 73.134 0.2828 73.176 73.029 73.311 0.041725 34 13 3 0 0 0 0.07087 1 40266 40266 30.703 24.92 1 17369000 52171 1232 35207 36008 60677 60677 0.04562284156691021 RFQEKFFIF 9 Unmodified _RFQEKFFIF_ 0 0 0 nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF;ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2 nc|ENSG00000078043|O75928-3|PIAS2 nc|ENSG00000078043|O75928-3|PIAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.33740234375 2 631.340041 1260.66553 0.21801 0.00013764 -1.1263 -0.00071111 -0.90834 -0.00057347 631.3392387173674 73.12 0.30225 73.162 73.009 73.311 0.041733 30 14 3 0 0 0 0.023481 1 40285 40285 60.074 35.4 1 8071300 52172 1232 35207 36008 60678 60678 0.04562284156691021 RFQERFFLL 9 Unmodified _RFQERFFLL_ 0 0 0 ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF ENSG00000120318|ENST00000239440|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2362670898438 3 419.236385 1254.68733 1.1037 0.0004627 -0.21915 -9.1874E-05 0.88453 0.00037083 419.2362606341073 70.901 0.57781 70.936 70.741 71.319 0.035515 72 25 4 0 0 0 0.094905 2 38993 38993;39100 34.222 34.222 1 29592000 52173 3508 35208 36009 60679;60680 60679 0.07017088905286073 RFQERFFLL 9 Unmodified _RFQERFFLL_ 0 0 0 ENSG00000120318|ENST00000239440|ARAP3;nc|ENSG00000120318|Q8WWN8-2|ARAP3;ENST00000512390.1_1_5:141033519-141041645:-|nuORF ENSG00000120318|ENST00000239440|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3512573242188 2 628.35094 1254.68733 1.2878 0.00080922 -0.66382 -0.00041711 0.62403 0.00039211 628.3504487112108 70.898 0.32013 70.933 70.785 71.106 0.035515 36 14 3 0 0 0 0.15882 1 39016 39016 17.113 3.2068 1 9121400 52174 3508 35208 36009 60681 60681 0.07017088905286073 RFQQDSQKF 9 Unmodified _RFQQDSQKF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.296875 2 592.296362 1182.57817 -0.45749 -0.00027097 0.39305 0.0002328 -0.06444 -3.8167E-05 592.2964636120024 19.75 0.094555 19.75 19.72 19.815 0 19 11 2 0 0 0 0.53557 1 9901 9901 5.2969 1.3525 1 361620 52175 3030 35209 36010 60682 60682 -0.005815417848680227 RFQQDSQKF 9 Unmodified _RFQQDSQKF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2965698242188 2 592.296362 1182.57817 NaN NaN NaN NaN NaN NaN NaN 19.654 1 19.682 19.182 20.182 0.028357 0 0 0 0.85029 1 9922 9922 1.4819 0.15237 1 52176 3030 35209 36010 60683 60683 -0.005815417848680227 RFQQDSQKF 9 Unmodified _RFQQDSQKF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2976684570312 2 592.296362 1182.57817 0.93091 0.00055137 -0.25032 -0.00014826 0.68059 0.00040311 592.29663021342 21.746 0.22148 19.012 18.9 19.122 -2.7348 19 11 2 0 0 0 0.023481 1 11651 11651 60.074 31.587 1 1759100 52177 3030 35209 36010 60684 60684 -0.005815417848680227 RFQRRRTPP 9 Unmodified _RFQRRRTPP_ 0 0 0 REV__nc|ENSG00000085644|O14771-2|ZNF213 REV__nc|ENSG00000085644|O14771-2|ZNF213 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.7009887695312 3 405.239012 1212.69521 -0.53627 -0.00021732 -0.42592 -0.0001726 -0.96218 -0.00038991 405.2387804596418 18.167 0.18921 18.181 18.075 18.264 0.013865 92 31 4 0 0 0 0.21806 1 9040 9040 2.7352 0.64919 1 10390000 + 52178 17755 35210 36011 60685 60685 0.09736660945418407 RFQTILLY 8 Unmodified _RFQTILLY_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF;ENST00000416720.1_9:42808985-42809460:+|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3085327148438 2 527.30821 1052.60187 0.56214 0.00029642 0.5358 0.00028253 1.0979 0.00057895 527.3086722702748 68.605 0.35999 68.63 68.458 68.818 0.025146 27 16 2 0 0 0 0.53823 1 37663 37663 37.974 11.09 1 4643300 52179 13430 35211 36012 60686 60686 0.07766923719646002 RFQTILLY 8 Unmodified _RFQTILLY_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF;ENST00000416720.1_9:42808985-42809460:+|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.30821 1052.60187 0.059304 3.1271E-05 1.344 0.00070868 1.4033 0.00073995 527.3093069593446 69.109 0.21137 68.628 68.485 68.697 -0.48071 -0.00094618 0.00076563 NaN 37.974 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 608320 52180 13430 35211 36012 0.07766923719646002 RFQTILLY 8 Unmodified _RFQTILLY_ 0 0 0 ENST00000443754.1_1_9:67328347-67334199:-|nuORF;ENST00000416720.1_9:42808985-42809460:+|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF ENST00000443754.1_1_9:67328347-67334199:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 527.30821 1052.60187 0.56214 0.00029642 0.5358 0.00028253 1.0979 0.00057895 527.3086722702748 68.605 0.35999 68.63 68.458 68.818 0.025146 0.00094618 -8.6672E-05 NaN 37.974 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4643300 52181 13430 35211 36012 0.07766923719646002 RFREQPLLF 9 Unmodified _RFREQPLLF_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.5646667480469 3 402.564502 1204.67168 -0.31202 -0.00012561 0.84352 0.00033957 0.53149 0.00021396 402.5648728318272 54.033 0.31778 53.966 53.824 54.142 -0.066936 38 15 3 0 0 0 0.047788 1 29320 29320 35.612 17.239 1 8037200 52182 9330 35212 36013 60687 60687 0.07752802388222335 RFREQPLLF 9 Unmodified _RFREQPLLF_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5651245117188 3 402.564502 1204.67168 1.156 0.00046536 0.86371 0.0003477 2.0197 0.00081306 402.56481682414585 91.655 0.25491 85.479 85.312 85.567 -6.1757 20 13 2 0 0 0 0.07087 1 60589 60589 30.703 11.982 1 9786600 52183 9330 35212 36013 60688 60688 0.07752802388222335 RFRLFDIMRYR 11 Unmodified _RFRLFDIMRYR_ 0 0 0 REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.9689025878906 4 393.969957 1571.85072 0.43837 0.0001727 -0.51834 -0.00020421 -0.079972 -3.1507E-05 393.9692557011984 23.925 0.3574 21.098 20.948 21.305 -2.8273 47 20 3 0 0 0 0.74046 1 12989 12989 0.45452 0 1 11184000 + 52184 18826 35213 36014 60689 60689 0.08766943684645412 RFRLFDIMRYR 11 Unmodified _RFRLFDIMRYR_ 0 0 0 REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 4 393.969957 1571.85072 -0.44436 -0.00017507 0.48367 0.00019055 0.039309 1.5487E-05 393.97012758326554 21.129 0.14593 21.129 21.028 21.174 0 0.015226 0.00045983 NaN 0.45452 41 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1587800 + 52185 18826 35213 36014 0.08766943684645412 RFRLFDIMRYR 11 Unmodified _RFRLFDIMRYR_ 0 0 0 REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 4 393.969957 1571.85072 0.43837 0.0001727 -0.51834 -0.00020421 -0.079972 -3.1507E-05 393.9692557011984 23.925 0.3574 21.098 20.948 21.305 -2.8273 -0.015226 -0.0011192 NaN 0.45452 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 11184000 + 52186 18826 35213 36014 0.08766943684645412 RFRLLRWWRRQ 11 Unmodified _RFRLLRWWRRQ_ 0 0 0 ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF ENST00000393313.5_1_7:127032353-127032743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 837.277099609375 2 836.992209 1671.96987 NaN NaN NaN NaN NaN NaN NaN 86.129 1 86.19 85.69 86.69 0.061638 0 0 0 0.9435 1 47761 47761 0 0 1 52187 12703 35214 36015 60690 60690 0.16075898424401203 RFRPFKKVIG 10 Unmodified _RFRPFKKVIG_ 0 0 0 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.3911743164062 2 624.3904 1246.76625 1.3615 0.00085012 -0.96523 -0.00060268 0.3963 0.00024745 624.389369613785 105.79 0.89849 99.617 99.416 100.31 -6.1757 293 119 4 0 0 0 0.72196 1 71006 71006 0.45834 0 1 16001000 + 52188 17892 35215 36016 60691 60691 0.15273360930223134 RFRQEWFERFW 11 Unmodified _RFRQEWFERFW_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2 REV__ENSG00000164082|ENST00000395052|GRM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.9214477539062 2 843.918041 1685.82153 NaN NaN NaN NaN NaN NaN NaN 78.34 1 78.392 77.892 78.892 0.052452 0 0 0 0.94301 1 43261 43261 0.35063 0.35063 1 + 52189 21865 35216 36017 60692 60692 0.006051226600220616 RFRQEWFERFW 11 Unmodified _RFRQEWFERFW_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2 REV__ENSG00000164082|ENST00000395052|GRM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.919921875 2 843.918041 1685.82153 NaN NaN NaN NaN NaN NaN NaN 92.235 1 92.265 91.765 92.765 0.030197 0 0 0 0.9435 1 51292 51292 0 0 1 + 52190 21865 35216 36017 60693 60693 0.006051226600220616 RFRRSWYFCYT 11 Unmodified _RFRRSWYFCYT_ 0 0 0 ENST00000369063.7_1_6:107040122-107067091:-|nuORF ENST00000369063.7_1_6:107040122-107067091:-|nuORF ENST00000369063.7_1_6:107040122-107067091:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 792.88134765625 2 792.88007 1583.74559 0.30861 0.00024469 3.4353 0.0027238 3.7439 0.0029685 793.384818193902 83.572 0.26617 83.635 83.465 83.731 0.063171 19 9 3 0 0 0 0.71618 1 46206 46206 2.7352 0.23671 1 8623500 52191 12292 35217 36018 60694 60694 -0.022935975117434282 RFRRWLNRYSY 11 Unmodified _RFRRWLNRYSY_ 0 0 0 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 nc|ENSG00000204183|Q5U4N7|GDF5-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 808.931640625 2 808.931483 1615.84841 NaN NaN NaN NaN NaN NaN NaN 79.891 1 79.948 79.448 80.448 0.057587 0 0 0 0.9435 1 44148 44148 0 0 1 52192 16503 35218 36019 60695 60695 0.06512231271221935 RFRSSFQNYLW 11 Unmodified _RFRSSFQNYLW_ 0 0 0 nc|ENSG00000119685|Q6EMB2-2|TTLL5 nc|ENSG00000119685|Q6EMB2-2|TTLL5 nc|ENSG00000119685|Q6EMB2-2|TTLL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.921630859375 3 501.921237 1502.74188 0.1268 6.3641E-05 -1.021 -0.00051248 -0.89425 -0.00044884 502.25436206964116 55.24 0.41578 55.171 54.98 55.395 -0.068741 53 20 4 0 0 0 0.67477 1 29962 29962 6.6235 0.75532 1 7548300 52193 16153 35219 36020 60696 60696 0.0106205598606266 RFRTITSSYY 10 Unmodified _RFRTITSSYY_ 0 0 0 ENSG00000174903|ENST00000311481|RAB1B;ENSG00000138069|ENST00000409784|RAB1A ENSG00000174903|ENST00000311481|RAB1B ENSG00000174903|ENST00000311481|RAB1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5824890136719 3 431.891055 1292.65134 0.097253 4.2003E-05 -1.5422 -0.00066604 -1.4449 -0.00062404 432.22354524657936 32.858 0.60867 32.888 32.803 33.412 0.029747 28 26 2 0 0 0 0.24008 1 17352 17352 0.62683 0.12087 1 671900 52194 5008 35220 36021 60697 60697 0.01671586937777647 RFSDHVALL 9 Unmodified _RFSDHVALL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000473076.1_1_1:182850471-182852465:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2931518554688 2 529.293091 1056.57163 0.52257 0.00027659 0.72903 0.00038587 1.2516 0.00066246 529.2933559346004 47.763 0.208 47.411 47.308 47.516 -0.3526 16 9 2 0 0 0 0.12357 1 25593 25593 32.786 10.049 1 7124600 52195 4745 35221 36022 60698 60698 0.04560565054430299 RFSDHVALL 9 Unmodified _RFSDHVALL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;ENST00000473076.1_1_1:182850471-182852465:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.293091 1056.57163 0.64412 0.00034093 0.028581 1.5128E-05 0.6727 0.00035605 529.2929048563317 47.476 0.13282 47.437 47.385 47.518 -0.038643 0.013253 -0.00047857 NaN 32.786 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 694510 52196 4745 35221 36022 0.04560565054430299 RFSDLRELF 9 Unmodified _RFSDLRELF_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8814392089844 3 394.880379 1181.61931 0.71722 0.00028322 1.2082 0.00047709 1.9254 0.00076031 394.8807769488077 63.762 0.25501 63.751 63.59 63.845 -0.010532 20 11 2 0 0 0 0.08907 1 34884 34884 28.181 20.704 1 4030700 52197 1574 35222 36023 60699 60699 0.03576219254614443 RFSDLRELF 9 Unmodified _RFSDLRELF_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.81689453125 2 591.81693 1181.61931 0.74783 0.00044258 0.83367 0.00049338 1.5815 0.00093596 591.8167113054715 63.762 0.25501 63.751 63.59 63.845 -0.010532 19 11 2 0 0 0 0.053952 1 34885 34885 43.982 11.865 1 5295300 52198 1574 35222 36023 60700 60700 0.03576219254614443 RFSDLRSLF 9 Unmodified _RFSDLRSLF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.877685546875 3 380.876857 1139.60874 0.82946 0.00031592 0.65068 0.00024783 1.4801 0.00056375 380.8771334206603 63.76 0.27438 63.75 63.571 63.845 -0.010532 29 12 3 0 0 0 0.021948 1 34875 34875 57.108 40.542 1 4578500 52199 7704 35223 36024 60701 60701 0.0445223660017291 RFSDLRSLF 9 Unmodified _RFSDLRSLF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.81298828125 2 570.811648 1139.60874 0.83075 0.0004742 3.2719 0.0018677 4.1027 0.0023419 570.8130716530065 63.727 0.33138 63.717 63.532 63.863 -0.010529 25 15 2 0 0 0 0.2324 1 34886 34886 20.415 5.1661 1 2529200 52200 7704 35223 36024 60702 60702 0.0445223660017291 RFSDLRSLF 9 Unmodified _RFSDLRSLF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS AL20221201_MKP_PDAC_01 4 380.8780822753906 3 380.876857 1139.60874 NaN NaN NaN NaN NaN NaN NaN 94.129 1 87.953 87.453 88.453 -6.1757 0 0 0 0.21752 1 62340 62340 23.016 9.497 1 52201 7704 35223 36024 60703 60703 0.0445223660017291 RFSELCTIDC 10 Unmodified _RFSELCTIDC_ 0 0 0 REV__nc|ENSG00000101605|P52179-2|MYOM1 REV__nc|ENSG00000101605|P52179-2|MYOM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1780090332031 3 396.17922 1185.51583 NaN NaN NaN NaN NaN NaN NaN 25.752 1 25.752 25.252 26.252 0 0 0 0 0.97556 1 13214 13214 3.3196 0.3244 1 + 52202 18187 35224 36025 60704 60704 -0.06950772239702019 RFSFSSKIIF 10 Unmodified _RFSFSSKIIF_ 0 0 0 REV__ENST00000219302.7_1_16:1820310-1820562:-|nuORF REV__ENST00000219302.7_1_16:1820310-1820562:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2337951660156 3 411.232641 1230.67609 1.4246 0.00058583 0.071264 2.9306E-05 1.4958 0.00061514 411.2325717057312 54.231 0.35783 48.366 48.158 48.516 -5.8653 46 20 3 0 0 0 0.38092 1 34461 34461 19.626 1.7628 1 24723000 + 52203 24754 35225 36026 60705 60705 0.0699826681113791 RFSFSSKIIF 10 Unmodified _RFSFSSKIIF_ 0 0 0 REV__ENST00000219302.7_1_16:1820310-1820562:-|nuORF REV__ENST00000219302.7_1_16:1820310-1820562:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2332153320312 3 411.232641 1230.67609 1.1324 0.00046567 0.1476 6.0697E-05 1.28 0.00052637 411.2326751870445 81.108 0.58515 74.932 74.642 75.227 -6.1757 69 33 3 0 0 0 0.38092 1 53244 53244 14.957 2.7824 1 30581000 + 52204 24754 35225 36026 60706 60706 0.0699826681113791 RFSPPLRLF 9 Unmodified _RFSPPLRLF_ 0 0 0 ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.835693359375 2 566.834926 1131.6553 1.228 0.00069606 -1.6733 -0.00094848 -0.44532 -0.00025242 566.8346929334338 66.44 0.42212 66.45 66.202 66.624 0.0095596 47 20 3 0 0 0 0.10134 1 36410 36410 34.932 13.395 1 7788300 52205 12369 35226 36027 60707 60707 0.09473721222116183 RFSPPLRLF 9 Unmodified _RFSPPLRLF_ 0 0 0 ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3359985351562 2 566.834926 1131.6553 1.1353 0.00064353 0.24808 0.00014062 1.3834 0.00078415 566.834978453186 94.818 0.33871 88.642 88.481 88.82 -6.1757 57 19 4 0 0 0 0.0081437 2 62742 62742;62858 103.42 61.325 1 120680000 52206 12369 35226 36027 60708;60709 60708 0.09473721222116183 RFSPPLRLF 9 Unmodified _RFSPPLRLF_ 0 0 0 ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF ENST00000371953.7_1_10:89623465-89623600:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2261047363281 3 378.225709 1131.6553 1.4709 0.00055633 -0.18975 -7.1767E-05 1.2812 0.00048457 378.22560226976935 94.815 0.30754 88.639 88.496 88.803 -6.1757 54 17 4 0 0 0 0.062454 2 62750 62750;62872 41.956 29.715 1 65558000 52207 12369 35226 36027 60710;60711 60710 0.09473721222116183 RFSRPFFI 8 Unmodified _RFSRPFFI_ 0 0 0 ENST00000343526.8_1_7:138270165-138270417:+|nuORF ENST00000343526.8_1_7:138270165-138270417:+|nuORF ENST00000343526.8_1_7:138270165-138270417:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8692626953125 3 357.202905 1068.58688 0.043417 1.5509E-05 3.5912 0.0012828 3.6346 0.0012983 357.53814870844303 34.299 0.42261 34.326 34.013 34.435 0.027401 33 19 3 0 0 0 8.7369 1 18063 18063 3.9444 0 1 2028300 52208 12003 35227 36028 60712 60712 0.05533476642290225 RFSRPFFI 8 Unmodified _RFSRPFFI_ 0 0 0 ENST00000343526.8_1_7:138270165-138270417:+|nuORF ENST00000343526.8_1_7:138270165-138270417:+|nuORF ENST00000343526.8_1_7:138270165-138270417:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 357.202905 1068.58688 -0.28602 -0.00010217 7.1069 0.0025386 6.8208 0.0024364 357.20403905051126 34.211 0.073174 34.02 33.972 34.046 -0.19132 -0.1532 0.0033796 NaN 3.9444 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 301940 52209 12003 35227 36028 0.05533476642290225 RFSWLGDLEKC 11 Unmodified _RFSWLGDLEKC_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2268981933594 3 451.892179 1352.65471 0.20247 9.1496E-05 0.83669 0.00037809 1.0392 0.00046959 451.8925976696297 66.887 0.25157 66.404 66.294 66.546 -0.48323 24 11 3 0 0 0 0.72309 1 36534 36534 0.84494 0 1 1828700 + 52210 22437 35228 36029 60713 60713 -0.00751486279909841 RFSWLGDLEKC 11 Unmodified _RFSWLGDLEKC_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.8923950195312 3 451.892179 1352.65471 1.4294 0.00064593 -0.31936 -0.00014432 1.11 0.00050161 451.8918717141107 66.379 0.28064 66.389 66.26 66.54 0.0095596 34 13 4 0 0 0 0.67937 1 36422 36422 3.134 0.69917 1 7586900 + 52211 22437 35228 36029 60714 60714 -0.00751486279909841 RFSYHLQI 8 Unmodified _RFSYHLQI_ 0 0 0 ENST00000538304.1_1_12:8540468-8549057:-|nuORF ENST00000538304.1_1_12:8540468-8549057:-|nuORF ENST00000538304.1_1_12:8540468-8549057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2877807617188 2 532.287808 1062.56106 0.25763 0.00013714 0.74368 0.00039585 1.0013 0.00053299 532.2873133508284 78.967 0.65449 78.481 78.238 78.893 -0.48596 44 27 3 0 0 0 0.78849 1 43441 43441 9.3474 0 1 4300300 52212 15004 35229 36030 60715 60715 0.03228582399992774 RFTAHVPLGCI 11 Unmodified _RFTAHVPLGCI_ 0 0 0 REV__ENSG00000168575|ENST00000520262|SLC20A2 REV__ENSG00000168575|ENST00000520262|SLC20A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2215881347656 3 405.221859 1212.64375 NaN NaN NaN NaN NaN NaN NaN 33.471 1 33.471 32.971 33.971 0 0 0 0 0.76766 1 17559 17559 7.846 0 1 + 52213 22323 35230 36031 60716 60716 0.0459315613650233 RFTDGVRDHFY 11 Unmodified _RFTDGVRDHFY_ 0 0 0 REV__nc|ENSG00000140284|O14975-2|SLC27A2 REV__nc|ENSG00000140284|O14975-2|SLC27A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 706.8389282226562 2 706.838925 1411.6633 -0.0065938 -4.6607E-06 -0.74287 -0.00052509 -0.74946 -0.00052975 707.3399405660916 63.186 0.24195 63.186 63.053 63.295 0 24 9 3 0 0 0 0.65846 1 35236 35236 8.1555 3.2585 1 1963300 + 52214 20457 35231 36032 60717 60717 -0.026067963190598675 RFTDGVRDHFY 11 Unmodified _RFTDGVRDHFY_ 0 0 0 REV__nc|ENSG00000140284|O14975-2|SLC27A2 REV__nc|ENSG00000140284|O14975-2|SLC27A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 706.838925 1411.6633 -0.0065938 -4.6607E-06 -0.74287 -0.00052509 -0.74946 -0.00052975 707.3399405660916 63.186 0.24195 63.186 63.053 63.295 0 0 0 NaN 8.1555 24 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1963300 + 52215 20457 35231 36032 -0.026067963190598675 RFTFGSRSL 9 Unmodified _RFTFGSRSL_ 0 0 0 ENST00000355221.7_3_8:54745628-54755835:-|nuORF ENST00000355221.7_3_8:54745628-54755835:-|nuORF ENST00000355221.7_3_8:54745628-54755835:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.5137634277344 3 357.529569 1069.56688 -0.69134 -0.00024717 4.2952 0.0015357 3.6039 0.0012885 357.5311656605648 33.111 0.25541 33.111 32.927 33.183 0 15 12 2 0 0 0 0.20399 1 17372 17372 7.1017 4.3665 1 641320 52216 12072 35232 36033 60718 60718 0.03487680911666757 RFTFTEGHR 9 Unmodified _RFTFTEGHR_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1973571777344 3 384.19659 1149.56794 -0.54786 -0.00021049 0.80389 0.00030885 0.25603 9.8366E-05 384.19687816879207 14.664 0.071463 14.633 14.577 14.649 -0.030868 25 15 2 0 0 0 0.55775 1 7135 7135 2.2828 0.69049 1 523300 + 52217 20281 35233 36034 60719 60719 -0.0008610471945758036 RFTFTEGHR 9 Unmodified _RFTFTEGHR_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.19659 1149.56794 -0.62951 -0.00024186 0.44973 0.00017279 -0.17978 -6.907E-05 384.1965999206646 14.71 0.045856 14.71 14.687 14.732 0 0.038228 -0.00030802 NaN 2.2828 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 350510 + 52218 20281 35233 36034 -0.0008610471945758036 RFTFTEGHR 9 Unmodified _RFTFTEGHR_ 0 0 0 REV__ENSG00000137936|ENST00000260502|BCAR3 REV__ENSG00000137936|ENST00000260502|BCAR3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 384.19659 1149.56794 -0.54786 -0.00021049 0.80389 0.00030885 0.25603 9.8366E-05 384.19687816879207 14.664 0.071463 14.633 14.577 14.649 -0.030868 -0.038228 0.00010018 NaN 2.2828 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 523300 + 52219 20281 35233 36034 -0.0008610471945758036 RFTGTIASF 9 Unmodified _RFTGTIASF_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7682189941406 2 500.266542 998.51853 0.078322 3.9182E-05 0.66071 0.00033053 0.73903 0.00036971 500.76826220566295 51.111 0.34488 51.057 50.882 51.226 -0.053871 42 16 4 0 0 0 0.15471 1 27634 27634 27.629 2.2295 1 3510500 52220 2815 35234 36035 60720 60720 0.01921187271761937 RFTLPPLVF 9 Unmodified _RFTLPPLVF_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.327392578125 2 545.326402 1088.63825 2.0785 0.0011334 -1.7354 -0.00094636 0.34306 0.00018708 545.3254126568854 94.901 0.5827 94.915 94.668 95.251 0.014244 40 21 2 0 0 0 0.20428 1 52767 52767 22.736 10.205 1 3406900 52221 1001 35235 36036 60721 60721 0.09747800616310087 RFTPSTHIK 9 Unmodified _RFTPSTHIK_ 0 0 0 REV__ENST00000467573.1_1_21:40499576-40499963:+|nuORF REV__ENST00000467573.1_1_21:40499576-40499963:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7772827148438 2 543.806365 1085.59818 -0.48958 -0.00026624 -0.15 -8.1572E-05 -0.63958 -0.00034781 543.8061810135808 34.581 0.47187 34.389 34.046 34.518 -0.19131 33 20 2 0 0 0 0.19633 1 18132 18132 10.074 5.3179 1 5151000 + 52222 27435 35236 36037 60722 60722 0.05880253945747427 RFTPSTHIK 9 Unmodified _RFTPSTHIK_ 0 0 0 REV__ENST00000467573.1_1_21:40499576-40499963:+|nuORF REV__ENST00000467573.1_1_21:40499576-40499963:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.778076171875 2 543.806365 1085.59818 0.2933 0.0001595 -0.66253 -0.00036029 -0.36923 -0.00020079 543.8059181809725 38.552 0.57322 34.183 33.87 34.443 -4.3689 93 36 3 0 0 0 0.20572 1 22621 22621 10.074 3.8681 1 53112000 + 52223 27435 35236 36037 60723 60723 0.05880253945747427 RFTRSQTL 8 Unmodified _RFTRSQTL_ 0 0 0 nc|ENSG00000065413|Q8N8A2-5|ANKRD44;nc|ENSG00000065413|Q8N8A2-3|ANKRD44;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44 nc|ENSG00000065413|Q8N8A2-5|ANKRD44 nc|ENSG00000065413|Q8N8A2-5|ANKRD44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.783935546875 2 504.78289 1007.55123 1.1813 0.00059631 0.76187 0.00038458 1.9432 0.00098089 505.28502482890394 21.652 0.18989 18.917 18.844 19.034 -2.7348 14 9 2 0 0 0 0.72664 1 11660 11660 14.838 0 1 987980 52224 902 35237 36038 60724 60724 0.047753943946077015 RFTSGRHYW 9 Unmodified _RFTSGRHYW_ 0 0 0 nc|ENSG00000154370|Q96F44-3|TRIM11;ENSG00000154370|ENST00000284551|TRIM11;ENSG00000229292|ENST00000341750|RFPL4AL1;ENSG00000223638|ENST00000434937|RFPL4A;ENST00000530883.1_2_19:56289199-56290240:+|nuORF nc|ENSG00000154370|Q96F44-3|TRIM11;ENST00000530883.1_2_19:56289199-56290240:+|nuORF ENST00000530883.1_2_19:56289199-56290240:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8695983886719 3 403.868585 1208.58392 NaN NaN NaN NaN NaN NaN NaN 23.509 1 23.53 23.03 24.03 0.021185 0 0 0 0.61214 1 12111 12111 12.175 9.4395 1 52225 14897;6324 35238 36039 60725 60725 -0.012023984825418665 RFVHGEGLRW 10 Unmodified _RFVHGEGLRW_ 0 0 0 ENSG00000100300|ENST00000337554|TSPO;ENST00000472378.1_1_22:43555244-43555427:+|nuORF ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5592041015625 3 419.559751 1255.65742 0.083345 3.4968E-05 -0.34135 -0.00014322 -0.258 -0.00010825 419.5595577054375 34.225 0.33867 34.253 34.077 34.416 0.027573 46 15 4 0 0 0 0.10078 2 17988 17988;18100 46.475 34.957 1 23484000 52226 1789 35239 36040 60726;60727 60726 0.03982149959938397 RFVLMGLH 8 Unmodified _RFVLMGLH_ 0 0 0 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.77734375 2 486.776022 971.537492 NaN NaN NaN NaN NaN NaN NaN 95.448 1 95.08 94.58 95.58 -0.36814 0 0 0 0.97444 1 52134 52134 0.69038 0 1 + 52227 22427 35240 36041 60728 60728 0.050584453618398584 RFVNTFNEL 9 Unmodified _RFVNTFNEL_ 0 0 0 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 ENSG00000088386|ENST00000376503|SLC15A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.1994934082031 3 380.532979 1138.57711 1.5044 0.00057248 1.0483 0.00039891 2.5527 0.0009714 380.5334933466594 19.58 0.27839 16.923 16.841 17.12 -2.6564 27 22 2 0 0 0 0.20727 1 10444 10444 2.4985 0 1 4395900 52228 1488 35241 36042 60729 60729 0.013362438462309001 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.805419921875 2 539.805834 1077.59712 0.9345 0.00050445 -0.98023 -0.00052913 -0.045724 -2.4682E-05 539.8052174700283 66.509 0.71913 66.518 66.301 67.02 0.0095596 100 34 4 0 0 0 0.013323 2 36520 36421;36520 71.134 27.275 1 570460000 52229 6038 35242 36043 60730;60731 60731 0.06142039576843672 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8054809570312 2 539.805834 1077.59712 1.1299 0.00060992 -0.25207 -0.00013607 0.87781 0.00047385 539.8056846360703 88.138 1.6435 81.962 81.326 82.969 -6.1757 285 91 5 0 0 0 0.0082281 7 57780 57780;57913;58033;58153;58273;58406;58531 92.822 27.275 1 512790000 52230 6038 35242 36043 60732;60733;60734;60735;60736;60737;60738 60732 0.06142039576843672 RFVNVVPTF 9 Unmodified _RFVNVVPTF_ 0 0 0 ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU ENSG00000149806|ENST00000529639|FAU MULTI-MSMS AL20221201_MKP_PDAC_01 4 1078.602172851562 1 1078.60439 1077.59712 1.1599 0.0012511 -1.0384 -0.00112 0.12158 0.00013114 1079.6065722875471 88.083 0.42129 81.907 81.71 82.132 -6.1757 35 23 2 0 0 0 0.018301 1 58158 58158 65.235 39.836 1 10698000 52231 6038 35242 36043 60739 60739 0.06142039576843672 RFVQRPLLF 9 Unmodified _RFVQRPLLF_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.355712890625 2 588.356025 1174.6975 0.42053 0.00024742 0.19433 0.00011434 0.61486 0.00036176 588.3560169089914 54.763 0.26207 54.696 54.542 54.804 -0.066936 30 12 3 0 0 0 0.085319 1 29704 29704 39.957 16.809 1 5086800 52232 9202 35243 36044 60740 60740 0.11713696630499726 RFVQRPLLF 9 Unmodified _RFVQRPLLF_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.573486328125 3 392.573109 1174.6975 0.19558 7.678E-05 0.33903 0.00013309 0.53461 0.00020987 392.57323794608607 54.764 0.30087 54.697 54.523 54.824 -0.066936 40 14 4 0 0 0 0.13231 1 29707 29707 29.841 13.691 1 7227900 52233 9202 35243 36044 60741 60741 0.11713696630499726 RFVQRPLLF 9 Unmodified _RFVQRPLLF_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5736389160156 3 392.573109 1174.6975 1.3372 0.00052494 -0.32836 -0.0001289 1.0088 0.00039604 392.5729917349755 92.089 0.42766 85.913 85.757 86.185 -6.1757 66 25 4 0 0 0 0.062454 2 60838 60838;60959 41.956 15.687 1 72414000 52234 9202 35243 36044 60742;60743 60742 0.11713696630499726 RFVQRPLLF 9 Unmodified _RFVQRPLLF_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3558349609375 2 588.356025 1174.6975 0.99186 0.00058357 -0.49067 -0.00028869 0.50119 0.00029488 588.3556157885569 92.088 0.37327 85.912 85.757 86.131 -6.1757 53 22 3 0 0 0 0.040683 1 60873 60873 54.774 18.729 1 84849000 52235 9202 35243 36044 60744 60744 0.11713696630499726 RFVRGSFS 8 Unmodified _RFVRGSFS_ 0 0 0 REV__APMAP|p.P139Lfs*37|1|0.06|ENSG00000101474|chr20:24973650-24973650|G/-|frameshift_variant REV__APMAP|p.P139Lfs*37|1|0.06|ENSG00000101474|chr20:24973650-24973650|G/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2597961425781 2 478.259051 954.503549 0.49193 0.00023527 1.1931 0.00057062 1.685 0.00080589 478.25978946566886 38.542 0.35747 34.173 33.932 34.29 -4.3689 39 22 2 0 0 0 0.6895 1 22763 22763 18.135 0 1 10319000 + 52236 16726 35244 36045 60745 60745 0.024477401944409394 RFVRIRPQTW 10 Unmodified _RFVRIRPQTW_ 0 0 0 nc|ENSG00000118257|O60462-6|NRP2;nc|ENSG00000118257|O60462-4|NRP2;nc|ENSG00000118257|O60462-5|NRP2;nc|ENSG00000118257|O60462-2|NRP2;ENSG00000118257|ENST00000357785|NRP2;nc|ENSG00000118257|O60462|NRP2 nc|ENSG00000118257|O60462-6|NRP2 nc|ENSG00000118257|O60462-6|NRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.5978698730469 3 453.598317 1357.77312 NaN NaN NaN NaN NaN NaN NaN 25.893 1 25.92 25.42 26.42 0.026951 0 0 0 0.98857 1 13419 13419 1.9064 0.57673 1 52237 3362 35245 36046 60746 60746 0.10854673810763416 RFVYWKSF 8 Unmodified _RFVYWKSF_ 0 0 0 REV__nc|ENSG00000090060|P51003-2|PAPOLA REV__nc|ENSG00000090060|P51003-2|PAPOLA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7994384765625 2 566.800552 1131.58655 NaN NaN NaN NaN NaN NaN NaN 102.35 1 102.3 101.8 102.8 -0.045853 0 0 0 0.97444 1 56851 56851 0.69038 0 1 + 52238 29528 35246 36047 60747 60747 0.026020569224101564 RFWLLKLL 8 Unmodified _RFWLLKLL_ 0 0 0 nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 nc|ENSG00000143324|Q9UBH6-2|XPR1 MSMS AL20221201_MKP_PDAC_01 4 544.8519287109375 2 544.852587 1087.69062 NaN NaN NaN NaN NaN NaN NaN 106.7 1 100.53 100.03 101.03 -6.1757 0 0 0 0.97444 1 71412 71412 0.79363 0 1 52239 5492 35247 36048 60748 60748 0.15028383749927343 RFWTVEAEPVG 11 Unmodified _RFWTVEAEPVG_ 0 0 0 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 REV__ENSG00000178031|ENST00000380548|ADAMTSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.887939453125 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 74.999 1 75.045 74.545 75.545 0.045959 0 0 0 0.93613 1 41351 41351 2.4348 0 1 + 52240 23017 35248 36049 60749 60749 0.0072018456346540916 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 831.9890747070312 2 831.985538 1661.95652 NaN NaN NaN NaN NaN NaN NaN 82.04 1 82.04 81.54 82.54 0 0 0 0 0.9435 1 45524 45524 0 0 1 + 52241 24809 35249 36050 60750 60750 0.1520232432078501 RFWWRRRKKIM 11 Unmodified _RFWWRRRKKIM_ 0 0 0 REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.0595092773438 2 831.985538 1661.95652 NaN NaN NaN NaN NaN NaN NaN 88.466 1 88.52 88.02 89.02 0.053352 0 0 0 0.9435 1 49218 49218 0 0 1 + 52242 24809 35249 36050 60751 60751 0.1520232432078501 RFYERYFFLCK 11 Unmodified _RFYERYFFLCK_ 0 0 0 REV__ENST00000357429.10_1_7:1036850-1037003:-|nuORF REV__ENST00000357429.10_1_7:1036850-1037003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.5995483398438 3 524.599107 1570.77549 NaN NaN NaN NaN NaN NaN NaN 15.429 1 15.429 14.929 15.929 0 0 0 0 0.9434 1 7431 7431 0.073264 0 1 + 52243 25851 35250 36051 60752 60752 0.012933414335748239 RFYLYDSET 9 Unmodified _RFYLYDSET_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.278076171875 2 597.277303 1192.54005 NaN NaN NaN NaN NaN NaN NaN 87.595 1 87.09 86.59 87.59 -0.50423 0 0 0 0.85798 1 47914 47914 0.52476 0 1 52244 4956 35251 36052 60753 60753 -0.04851472490190645 RFYNHPLHF 9 Unmodified _RFYNHPLHF_ 0 0 0 nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3;ENSG00000168763|ENST00000305510|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 nc|ENSG00000168763|Q8NE01-2|CNNM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2120361328125 3 410.87708 1229.60941 -0.24134 -9.9162E-05 1.077 0.00044253 0.83569 0.00034336 411.21201811164394 35.33 0.33129 35.355 35.184 35.515 0.024971 23 15 2 0 0 0 0.052168 1 18645 18645 47.749 29.027 1 3924500 52245 7795 35252 36053 60754 60754 0.003790760398715065 RFYRGDAEGF 10 Unmodified _RFYRGDAEGF_ 0 0 0 REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF REV__ENST00000482704.1_1_2:96688855-96689146:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5283508300781 3 406.528117 1216.56252 0.30805 0.00012523 -0.045667 -1.8565E-05 0.26239 0.00010667 406.52803289279683 55.132 0.39078 54.654 54.45 54.841 -0.47798 33 18 2 0 0 0 0.69064 1 29914 29914 1.9064 0.1641 1 1179400 + 52246 23564 35253 36054 60755 60755 -0.03709828301930429 RGAAAGHP 8 Unmodified _RGAAAGHP_ 0 0 0 ENSG00000107281|ENST00000371601|NPDC1;ENST00000488145.1_1_9:139935475-139940441:-|nuORF;ENST00000354619.9_1_1:236433277-236445243:-|nuORF ENSG00000107281|ENST00000371601|NPDC1 ENSG00000107281|ENST00000371601|NPDC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1922912597656 2 368.696087 735.37762 -0.38854 -0.00014325 -2.328 -0.00085833 -2.7165 -0.0010016 368.69336616522276 21.524 0.054195 21.524 21.489 21.543 0 6 5 2 0 0 0 8.7369 1 10893 10893 0.79363 0.79363 1 466450 52247 2486 35254 36055 60756 60756 -0.0006534659102044316 RGAGGPGW 8 Unmodified _RGAGGPGW_ 0 0 0 REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 757.3741455078125 1 757.373998 756.366721 0.081219 6.1514E-05 2.5077 0.0018993 2.5889 0.0019608 757.3751955173751 79.025 0.4502 78.539 78.213 78.663 -0.48596 23 18 2 0 0 0 0.80992 1 43267 43267 0.69038 0 1 525890 + 52248 24922 35255 36056 60757 60757 -0.02120748965285202 RGAGGPGW 8 Unmodified _RGAGGPGW_ 0 0 0 REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 757.373998 756.366721 -0.0074944 -5.6761E-06 3.2044 0.0024269 3.1969 0.0024212 757.3764313615635 78.534 0.36573 78.534 78.313 78.679 0 -0.10245 0.00051576 NaN 0.69038 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 343540 + 52249 24922 35255 36056 -0.02120748965285202 RGAGGPGW 8 Unmodified _RGAGGPGW_ 0 0 0 REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 757.373998 756.366721 0.081219 6.1514E-05 2.5077 0.0018993 2.5889 0.0019608 757.3751955173751 79.025 0.4502 78.539 78.213 78.663 -0.48596 -0.096866 -1.1901E-05 NaN 0.69038 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 525890 + 52250 24922 35255 36056 -0.02120748965285202 RGAGGPGW 8 Unmodified _RGAGGPGW_ 0 0 0 REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF REV__ENST00000256682.8_1_12:49332049-49332487:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 757.373998 756.366721 0.58471 0.00044285 1.1053 0.00083713 1.69 0.00128 757.3746238472629 78.78 0.30841 78.835 78.628 78.936 0.05497 0.19931 -0.001074 NaN 0.69038 12 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1463100 + 52251 24922 35255 36056 -0.02120748965285202 RGAGLAWG 8 Unmodified _RGAGLAWG_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2145385742188 2 394.214112 786.413671 0.17322 6.8284E-05 0.87855 0.00034634 1.0518 0.00041462 394.21448965535944 38.228 0.26321 38.228 38.089 38.352 0 26 20 2 0 0 0 0.80624 1 20388 20388 2.8892 0 1 15702000 52252 1543 35256 36057 60758 60758 0.011921105858505143 RGAGLAWG 8 Unmodified _RGAGLAWG_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2150573730469 2 394.214112 786.413671 -0.017198 -6.7798E-06 1.4511 0.00057204 1.4339 0.00056526 394.21483785701975 39.943 0.55582 39.943 39.72 40.276 0 73 27 4 0 0 0 0.80624 1 21363 21363 2.8892 0 1 9544100 52253 1543 35256 36057 60759 60759 0.011921105858505143 RGAGLAWG 8 Unmodified _RGAGLAWG_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2156066894531 2 394.214112 786.413671 0.4463 0.00017594 0.48428 0.00019091 0.93058 0.00036685 394.21484755218387 40.207 0.43619 39.91 39.804 40.24 -0.29716 43 20 3 0 0 0 0.80624 1 21254 21254 2.8892 0 1 2670600 52254 1543 35256 36057 60760 60760 0.011921105858505143 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.264404296875 2 435.263802 868.513051 0.2701 0.00011756 -0.0050882 -2.2147E-06 0.26501 0.00011535 435.2637572404048 40.122 0.35874 39.825 39.649 40.008 -0.29716 29 16 2 0 0 0 0.15558 2 21153 21153;21262 85.357 7.3724 1 10253000 + 52255 22247 35257 36058 60761;60762 60761 0.07353508479945958 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2644348144531 2 435.263802 868.513051 0.51382 0.00022365 0.41293 0.00017973 0.92675 0.00040338 435.2640836593476 39.762 0.28746 39.767 39.607 39.894 0.0050545 29 13 3 0 0 0 0.17954 1 21160 21160 78.149 16.792 1 3271600 + 52256 22247 35257 36058 60763 60763 0.07353508479945958 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2634887695312 2 435.263802 868.513051 0.65329 0.00028435 -0.11128 -4.8435E-05 0.54201 0.00023592 435.26375513724355 44.224 0.54321 39.372 39.039 39.582 -4.852 65 38 2 0 0 0 0.15558 2 26858 26858;26985 85.357 3.7437 1 40685000 + 52257 22247 35257 36058 60764;60765 60764 0.07353508479945958 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.8267211914062 2 435.263802 868.513051 0.65329 0.00028435 -0.11128 -4.8435E-05 0.54201 0.00023592 435.26375513724355 44.224 0.54321 39.372 39.039 39.582 -4.852 65 38 2 0 0 0 8.7369 1 27092 27092 57.471 2.6978 1 40685000 + 52258 22247 35257 36058 60766 60766 0.07353508479945958 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.263802 868.513051 0.2701 0.00011756 -0.0050882 -2.2147E-06 0.26501 0.00011535 435.2637572404048 40.122 0.35874 39.825 39.649 40.008 -0.29716 0.029154 -0.00017256 NaN 85.357 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 10253000 + 52259 22247 35257 36058 0.07353508479945958 RGAPDLKL 8 Unmodified _RGAPDLKL_ 0 0 0 REV__nc|ENSG00000167716|Q562E7-4|WDR81 REV__nc|ENSG00000167716|Q562E7-4|WDR81 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 435.263802 868.513051 0.51382 0.00022365 0.41293 0.00017973 0.92675 0.00040338 435.2640836593476 39.762 0.28746 39.767 39.607 39.894 0.0050545 -0.029154 0.00019134 NaN 85.357 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3271600 + 52260 22247 35257 36058 0.07353508479945958 RGARVVSK 8 Unmodified _RGARVVSK_ 0 0 0 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.775390625 2 436.774868 871.535184 1.0575 0.00046191 0.35486 0.000155 1.4124 0.0006169 436.7749211350576 90.047 0.659 83.872 83.544 84.203 -6.1757 106 37 4 0 0 0 0.80992 1 59433 59433 0.69038 0 1 164060000 52261 2926 35258 36059 60767 60767 0.09427732948381617 RGASGSFE 8 Unmodified _RGASGSFE_ 0 0 0 ENST00000607094.1_1_6:116600797-116720830:+|nuORF REV__ENST00000229395.7_1_12:27091398-27091527:+|nuORF REV__ENST00000229395.7_1_12:27091398-27091527:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 810.3778686523438 1 810.374057 809.366781 1.8772 0.0015213 0.017921 1.4523E-05 1.8952 0.0015358 810.3741542420083 103.54 0.070084 97.367 97.331 97.401 -6.1757 34 15 3 0 0 0 0.80311 1 69405 69405 4.756 0 1 31070000 52262 15859 35259 36060 60768 60768 -0.04552793755954099 RGASHILF 8 Unmodified _RGASHILF_ 0 0 0 REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7563171386719 2 450.756144 899.497735 NaN NaN NaN NaN NaN NaN NaN 67.488 1 67.488 66.988 67.988 0 0 0 0 0.97444 1 37632 37632 0.79363 0 1 + 52263 28160 35260 36061 60769 60769 0.04396641682762947 RGASHILF 8 Unmodified _RGASHILF_ 0 0 0 REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7581481933594 2 450.756144 899.497735 NaN NaN NaN NaN NaN NaN NaN 71.047 1 71.047 70.547 71.547 0 0 0 0 0.97444 1 39580 39580 0.79363 0 1 + 52264 28160 35260 36061 60770 60770 0.04396641682762947 RGASHILF 8 Unmodified _RGASHILF_ 0 0 0 REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF REV__ENST00000511771.1_1_4:189020146-189026726:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.75732421875 2 450.756144 899.497735 0.93998 0.0004237 1.5695 0.00070746 2.5095 0.0011312 450.75663996355655 67.128 0.2686 67.146 67.029 67.297 0.018036 22 13 2 0 0 0 0.80975 1 36875 36875 0.79363 0 1 2787500 + 52265 28160 35260 36061 60771 60771 0.04396641682762947 RGAVAHVF 8 Unmodified _RGAVAHVF_ 0 0 0 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.7428894042969 2 428.743037 855.471521 0.013397 5.744E-06 0.61839 0.00026513 0.63178 0.00027087 428.74325655242336 65.86 0.37051 65.375 65.169 65.54 -0.48428 37 15 3 0 0 0 0.80676 1 35954 35954 2.5775 0 1 14435000 52266 16452 35261 36062 60772 60772 0.03800372511284422 RGAVAHVF 8 Unmodified _RGAVAHVF_ 0 0 0 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.743408203125 2 428.743037 855.471521 0.7755 0.00033249 0.7907 0.00033901 1.5662 0.0006715 428.74327982427576 65.377 0.42212 65.377 65.14 65.562 1.5259E-05 60 19 4 0 0 0 0.80676 2 35782 35782;35887 2.5775 0 1 103130000 52267 16452 35261 36062 60773;60774 60773 0.03800372511284422 RGAVKEDSGY 10 Unmodified _RGAVKEDSGY_ 0 0 0 REV__TXNIP|p.G24D|1|0.03|ENSG00000265972|chr1:145996196-145996196|C/T|missense_variant REV__TXNIP|p.G24D|1|0.03|ENSG00000265972|chr1:145996196-145996196|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2695922851562 2 541.26727 1080.51999 0.56417 0.00030537 1.7582 0.00095167 2.3224 0.001257 541.2686182058856 36.852 0.18424 36.852 36.732 36.916 0 12 8 2 0 0 0 0.64628 1 19585 19585 8.7454 1.4562 1 1463600 + 52268 30129 35262 36063 60775 60775 -0.01705223430121805 RGDEQSRESF 10 Unmodified _RGDEQSRESF_ 0 0 0 REV__ENSG00000139289|ENST00000266671|PHLDA1 REV__ENSG00000139289|ENST00000266671|PHLDA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7764282226562 2 605.77599 1209.53743 NaN NaN NaN NaN NaN NaN NaN 65.83 1 65.83 65.33 66.33 0 0 0 0 0.97592 1 36716 36716 3.2813 0.28607 1 + 52269 20397 35263 36064 60776 60776 -0.05895927895130626 RGEAATFNQF 10 Unmodified _RGEAATFNQF_ 0 0 0 ENST00000318967.6_2_1:153700611-153701247:+|nuORF;ENST00000435409.6_2_1:153700651-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF ENST00000318967.6_2_1:153700611-153701247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.77490234375 2 570.775262 1139.53597 -0.79444 -0.00045345 -0.074497 -4.2521E-05 -0.86894 -0.00049597 570.7751458746076 32.259 0.33121 32.259 32.043 32.374 0 50 16 4 0 0 0 0.13391 1 16826 16826 41.84 0 1 8175800 52270 11755 35264 36065 60777 60777 -0.02821517193251566 RGEDHREVQ 9 Unmodified _RGEDHREVQ_ 0 0 0 ENST00000497343.5_1_3:160473906-160474320:+|nuORF ENST00000497343.5_1_3:160473906-160474320:+|nuORF ENST00000497343.5_1_3:160473906-160474320:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8510131835938 3 375.851371 1124.53228 -0.090549 -3.4033E-05 -0.23572 -8.8596E-05 -0.32627 -0.00012263 375.8512817195309 32.822 0.23911 32.852 32.698 32.937 0.029743 19 10 2 0 0 0 0.58145 1 17237 17237 2.4985 0 1 5619000 52271 14398 35265 36066 60778 60778 -0.02500186967108675 RGEDWATFH 9 Unmodified _RGEDWATFH_ 0 0 0 REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF REV__ENST00000370010.6_1_6:76311739-76312006:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.7551879882812 2 559.75433 1117.49411 NaN NaN NaN NaN NaN NaN NaN 26.597 1 23.646 23.146 24.146 -2.9511 0 0 0 0.6557 1 14673 14673 10.824 0.67336 1 + 52272 26049 35266 36067 60779 60779 -0.05994072881753709 RGEEKWDFACQ 11 Unmodified _RGEEKWDFACQ_ 0 0 0 REV__FAM76B|p.R114W|1|0.15|ENSG00000077458|chr11:95786142-95786142|G/A|missense_variant REV__FAM76B|p.R114W|1|0.15|ENSG00000077458|chr11:95786142-95786142|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 684.80224609375 2 684.803694 1367.59283 0.51802 0.00035475 -0.9691 -0.00066364 -0.45107 -0.0003089 684.8032837893913 24.613 0.25612 21.73 21.541 21.797 -2.8831 21 13 2 0 0 0 0.66428 1 13421 13421 7.609 0.50723 1 2650500 + 52273 29344 35267 36068 60780 60780 -0.07625837699015392 RGELNEHL 8 Unmodified _RGELNEHL_ 0 0 0 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7787475585938 2 484.251423 966.488293 0.31856 0.00015426 1.4281 0.00069155 1.7466 0.00084581 484.2523410302501 75.506 0.64394 75.506 75.25 75.894 0 34 27 2 0 0 0 0.80383 1 42198 42198 4.3292 0 1 894590 52274 9318 35268 36069 60781 60781 0.003708286065602806 RGELPCDDY 9 Unmodified _RGELPCDDY_ 0 0 0 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.228515625 2 534.226756 1066.43896 0.52152 0.00027861 0.82572 0.00044112 1.3472 0.00071973 534.2275320274559 36.987 0.21919 36.987 36.837 37.056 0 17 10 2 0 0 0 0.5029 1 19642 19642 7.2892 0.56607 1 3081900 52275 3053 35269 36070 60782 60782 -0.09160247464546956 RGENDSSEQF 10 Unmodified _RGENDSSEQF_ 0 0 0 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 REV__nc|ENSG00000136536|Q9H992-2|MARCHF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7465209960938 2 584.746899 1167.47924 NaN NaN NaN NaN NaN NaN NaN 89.587 1 89.587 89.087 90.087 0 0 0 0 0.99248 1 49568 49568 1.4819 0.68827 1 + 52276 20168 35270 36071 60783 60783 -0.09779609540419187 RGEPELQCIK 10 Unmodified _RGEPELQCIK_ 0 0 0 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3079223632812 2 586.808248 1171.60194 0.71406 0.00041901 -1.0512 -0.00061686 -0.33716 -0.00019785 586.8083556915432 82.81 2.0493 76.634 75.932 77.981 -6.1757 242 111 4 0 0 0 0.63399 1 54171 54171 9.3831 0 1 61015000 + 52277 22930 35271 36072 60784 60784 0.023005556572798014 RGGAAATP 8 Unmodified _RGGAAATP_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.6908569335938 2 350.69047 699.366387 0.4598 0.00016125 -0.22666 -7.9486E-05 0.23314 8.1761E-05 350.69042529382205 71.386 0.3918 70.909 70.705 71.097 -0.47736 27 16 2 0 0 0 0.80992 1 39163 39163 0.69038 0 1 1069200 + 52278 23823 35272 36073 60785 60785 0.004678313148360758 RGGAAATP 8 Unmodified _RGGAAATP_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1889953613281 2 350.69047 699.366387 0.4598 0.00016125 -0.22666 -7.9486E-05 0.23314 8.1761E-05 350.69042529382205 71.386 0.3918 70.909 70.705 71.097 -0.47736 27 16 2 0 0 0 8.7369 1 39034 39034 0.69038 0 1 1069200 + 52279 23823 35272 36073 60786 60786 0.004678313148360758 RGGAAATP 8 Unmodified _RGGAAATP_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.6898193359375 2 350.69047 699.366387 NaN NaN NaN NaN NaN NaN NaN 69.311 1 69.342 68.842 69.842 0.030914 0 0 0 0.97444 1 38094 38094 0.79363 0 1 + 52280 23823 35272 36073 60787 60787 0.004678313148360758 RGGAAHLA 8 Unmodified _RGGAAHLA_ 0 0 0 REV__ENST00000397676.7_1_3:183963587-183966660:-|nuORF REV__ENST00000397676.7_1_3:183963587-183966660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1988830566406 2 376.711737 751.40892 0.065827 2.4798E-05 -0.53935 -0.00020318 -0.47352 -0.00017838 376.7113184994804 18.732 0.14337 18.738 18.658 18.802 0.0060463 13 6 3 0 0 0 8.7369 1 9463 9463 0.79363 0 1 2063300 + 52281 26542 35273 36074 60788 60788 0.02327226443071595 RGGAGAWL 8 Unmodified _RGGAGAWL_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2145385742188 2 394.214112 786.413671 0.39369 0.0001552 1.6636 0.00065582 2.0573 0.00081102 394.21475977861667 42.663 0.46909 42.654 42.516 42.985 -0.0088196 25 21 2 0 0 0 0.80676 1 22845 22845 2.5775 0 1 7998900 52282 7374 35274 36075 60789 60789 0.011921105858505143 RGGAVPHV 8 Unmodified _RGGAVPHV_ 0 0 0 REV__ENST00000546076.5_1_12:31135471-31135615:+|nuORF REV__ENST00000546076.5_1_12:31135471-31135615:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.7272338867188 2 396.727387 791.44022 NaN NaN NaN NaN NaN NaN NaN 18.25 1 18.256 17.756 18.756 0.0060463 0 0 0 0.93066 1 9242 9242 14.582 8.8213 1 + 52283 28656 35275 36076 60790 60790 0.03615799477177006 RGGGGGGGC 9 Unmodified _RGGGGGGGC_ 0 0 0 REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF;REV__ENST00000491136.6_1_1:52826615-52827248:-|nuORF REV__ENST00000491136.6_1_1:52826615-52827248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.2780151367188 1 677.278383 676.271106 0.44635 0.0003023 -1.8285 -0.0012384 -1.3822 -0.00093612 677.2772021715815 87.945 0.40729 87.44 87.195 87.602 -0.50423 30 18 2 0 0 0 0.62242 1 48175 48175 0 0 1 1435200 + 52284 26822;27888 35276 36077 60791 60791 -0.07997845147838234 RGGQAPGF 8 Unmodified _RGGQAPGF_ 0 0 0 nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L nc|ENSG00000131778|Q86WJ1-3|CHD1L nc|ENSG00000131778|Q86WJ1-3|CHD1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8916931152344 2 395.203744 788.392936 -0.5336 -0.00021088 0.34395 0.00013593 -0.18965 -7.495E-05 395.20392998515314 18.404 0.1293 18.427 18.389 18.518 0.023106 35 28 2 0 0 0 8.7369 1 9213 9213 2.5775 0 1 294440 52285 4349 35277 36078 60792 60792 -0.009724797938133634 RGGRHELSV 9 Unmodified _RGGRHELSV_ 0 0 0 REV__ENST00000591949.1_1_19:36237385-36237745:+|nuORF REV__ENST00000591949.1_1_19:36237385-36237745:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7781372070312 2 505.778139 1009.54173 0.16831 8.5129E-05 0.074114 3.7485E-05 0.24243 0.00012261 505.7781896466 22.896 0.41227 20.118 19.91 20.322 -2.7784 73 28 3 0 0 0 0.52067 1 12359 12359 6.2058 0.44535 1 47505000 + 52286 29169 35278 36079 60793 60793 0.03733626109078614 RGGRHVEKQVI 11 Unmodified _RGGRHVEKQVI_ 0 0 0 ENST00000382293.7_1_9:707199-710887:+|nuORF ENST00000382293.7_1_9:707199-710887:+|nuORF ENST00000382293.7_1_9:707199-710887:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 426.9194641113281 3 426.917827 1277.73165 NaN NaN NaN NaN NaN NaN NaN 79.433 1 73.257 72.757 73.757 -6.1757 0 0 0 0.71214 1 52052 52052 16.275 1.4366 1 52287 12630 35279 36080 60794 60794 0.10389493051457066 RGGRHVEKQVI 11 Unmodified _RGGRHVEKQVI_ 0 0 0 ENST00000382293.7_1_9:707199-710887:+|nuORF ENST00000382293.7_1_9:707199-710887:+|nuORF ENST00000382293.7_1_9:707199-710887:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 426.9194946289062 3 426.917827 1277.73165 NaN NaN NaN NaN NaN NaN NaN 79.681 1 73.505 73.005 74.005 -6.1757 0 0 0 0.51603 1 52232 52232 23.964 4.8202 1 52288 12630 35279 36080 60795 60795 0.10389493051457066 RGGRLPTP 8 Unmodified _RGGRLPTP_ 0 0 0 ENST00000374490.7_1_1:24128417-24128612:-|nuORF ENST00000374490.7_1_1:24128417-24128612:-|nuORF ENST00000374490.7_1_1:24128417-24128612:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2539978027344 2 427.253769 852.492984 -0.56899 -0.0002431 0.77755 0.00033221 0.20857 8.911E-05 427.2541978824629 16.055 0.18577 16.041 15.944 16.13 -0.014065 105 69 2 0 0 0 0.81007 1 7875 7875 0.6015 0 1 511070 52289 12446 35280 36081 60796 60796 0.0608375753998871 RGHHEHSI 8 Unmodified _RGHHEHSI_ 0 0 0 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.74072265625 2 486.741557 971.468561 NaN NaN NaN NaN NaN NaN NaN 19.423 1 19.423 18.923 19.923 0 0 0 0 0.97444 1 9711 9711 4.756 0 1 + 52290 29871 35281 36082 60797 60797 -0.018315026135155676 RGHWWPGGV 9 Unmodified _RGHWWPGGV_ 0 0 0 REV__ENST00000313401.3_1_17:30817050-30817605:+|nuORF REV__ENST00000313401.3_1_17:30817050-30817605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1791076660156 3 351.178871 1050.51478 -0.2341 -8.2212E-05 -0.28107 -9.8707E-05 -0.51518 -0.00018092 351.1785852483435 31.703 0.20082 31.703 31.619 31.82 0 13 9 2 0 0 0 0.58865 1 16572 16572 1.0715 0.3738 1 609370 + 52291 25439 35282 36083 60798 60798 -0.008454377114503586 RGIWLAYIIL 10 Unmodified _RGIWLAYIIL_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5859375 3 406.585015 1216.73321 0.54826 0.00022291 0.93965 0.00038205 1.4879 0.00060496 406.58524129238737 70.521 0.23459 70.557 70.401 70.636 0.035507 25 10 3 0 0 0 0.63089 1 38817 38817 9.544 0.79857 1 2012700 52292 3701 35283 36084 60799 60799 0.13351734087518707 RGKGGCGA 8 Unmodified _RGKGGCGA_ 0 0 0 REV__ENSG00000188895|ENST00000398532|MSL1 REV__ENSG00000188895|ENST00000398532|MSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1765747070312 2 353.176672 704.338792 NaN NaN NaN NaN NaN NaN NaN 19.413 1 19.436 18.936 19.936 0.023106 0 0 0 0.97444 1 9786 9786 0 0 1 + 52293 23741 35284 36085 60800 60800 -0.0252039521703864 RGKGQAAL 8 Unmodified _RGKGQAAL_ 0 0 0 REV__ENST00000528031.1_1_11:75167685-75168798:-|nuORF REV__ENST00000528031.1_1_11:75167685-75168798:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2376708984375 2 400.740494 799.466435 -0.7817 -0.00031326 -1.7291 -0.00069291 -2.5108 -0.0010062 400.7397436195858 103.13 0.11593 103.09 103.03 103.14 -0.047928 9 4 3 0 0 0 8.7369 1 57276 57276 0 0 1 14960000 + 52294 28406 35285 36086 60801 60801 0.058680686486354716 RGKIRVAIK 9 Unmodified _RGKIRVAIK_ 0 0 0 REV__ENST00000533296.5_1_6:130497274-130536439:-|nuORF REV__ENST00000533296.5_1_6:130497274-130536439:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8549194335938 2 520.856193 1039.69783 NaN NaN NaN NaN NaN NaN NaN 105.86 1 105.81 105.31 106.31 -0.048737 0 0 0 0.8622 1 58678 58678 0 0 1 + 52295 28479 35286 36087 60802 60802 0.17957116350339675 RGKKAGCP 8 Unmodified _RGKKAGCP_ 0 0 0 REV__ENST00000308982.11_1_3:128598473-128603521:+|nuORF REV__ENST00000308982.11_1_3:128598473-128603521:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.7288208007812 2 408.729072 815.443591 -0.23301 -9.5237E-05 -1.1397 -0.00046582 -1.3727 -0.00056106 408.72850292600145 76.911 0.28397 76.432 76.3 76.584 -0.47945 15 12 2 0 0 0 0.81107 1 42127 42127 0 0 1 345270 + 52296 25402 35287 36088 60803 60803 0.02848726259526302 RGKMWMRSC 9 Unmodified _RGKMWMRSC_ 0 0 0 REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF REV__ENST00000254657.7_1_2:239171664-239176756:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7733764648438 2 577.772631 1153.53071 0.59607 0.00034439 0.071543 4.1336E-05 0.66762 0.00038573 578.273988303215 83.195 0.32667 82.697 82.511 82.837 -0.49751 20 12 2 0 0 0 0.21893 1 45609 45609 0.52476 0 1 796900 + 52297 24905 35288 36089 60804 60804 -0.03991558852703747 RGKPLAAL 8 Unmodified _RGKPLAAL_ 0 0 0 REV__nc|ENSG00000163531|O94856|NFASC REV__nc|ENSG00000163531|O94856|NFASC MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2696228027344 2 413.268887 824.523222 0.71595 0.00029588 0.1139 4.707E-05 0.82984 0.00034295 413.26902844720144 22.522 0.23402 19.743 19.594 19.828 -2.7784 17 12 2 0 0 0 0.61462 1 12089 12089 24.674 6.5389 1 2384900 + 52298 21780 35289 36090 60805 60805 0.10394116205168302 RGKQNHVLK 9 Unmodified _RGKQNHVLK_ 0 0 0 ENSG00000086102|ENST00000379540|NFX1;nc|ENSG00000086102|Q12986-3|NFX1;nc|ENSG00000086102|Q12986-2|NFX1;ENST00000379521.8_2_9:33290558-33364805:+|nuORF ENSG00000086102|ENST00000379540|NFX1 ENSG00000086102|ENST00000379540|NFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2220764160156 3 360.552597 1078.63596 0.0088392 3.187E-06 0.13296 4.7938E-05 0.14179 5.1125E-05 360.55261854374663 18.934 0.16914 18.941 18.839 19.008 0.0060482 18 8 3 0 0 0 0.60485 1 9645 9645 1.0715 1.0715 1 1078100 52299 1430 35290 36091 60806 60806 0.09978764931202022 RGKRWRLGR 9 Unmodified _RGKRWRLGR_ 0 0 0 nc|ENSG00000135903|P23760-2|PAX3 nc|ENSG00000135903|P23760-2|PAX3 nc|ENSG00000135903|P23760-2|PAX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8875427246094 3 395.579369 1183.71628 -0.079394 -3.1407E-05 -1.5138 -0.00059881 -1.5931 -0.00063022 395.5790535534548 17.284 0.12281 17.29 17.225 17.348 0.0050564 21 9 3 0 0 0 0.60285 1 8689 8689 1.1933 0 1 1449700 52300 16208 35291 36092 60807 60807 0.13176671044902832 RGKVKVHSY 9 Unmodified _RGKVKVHSY_ 0 0 0 ENST00000370466.3_1_1:89591553-89591781:-|nuORF;ENST00000464839.5_1_1:89591553-89613456:-|nuORF ENST00000370466.3_1_1:89591553-89591781:-|nuORF ENST00000370466.3_1_1:89591553-89591781:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.5445861816406 3 358.545331 1072.61416 NaN NaN NaN NaN NaN NaN NaN 38.967 1 38.979 38.479 39.479 0.011452 0 0 0 0.84564 1 20742 20742 1.0715 0.20709 1 52301 12333 35292 36093 60808 60808 0.08075960182668496 RGLFLPLSLCF 11 Unmodified _RGLFLPLSLCF_ 0 0 0 REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2 REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5757446289062 3 422.57401 1264.7002 NaN NaN NaN NaN NaN NaN NaN 17.619 1 17.624 17.124 18.124 0.0050564 0 0 0 0.94165 1 8896 8896 0.45452 0 1 + 52302 24694 35293 36094 60809 60809 0.0784378397315777 RGLGWWSWSR 10 Unmodified _RGLGWWSWSR_ 0 0 0 REV__ENST00000271375.6_1_1:168195277-168200759:+|nuORF REV__ENST00000271375.6_1_1:168195277-168200759:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8883056640625 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 53.969 1 53.502 53.002 54.002 -0.46664 0 0 0 1.0024 1 29221 29221 0.13989 0 1 + 52303 25135 35294 36095 60810 60810 0.008538634428759906 RGLLLYTATV 10 Unmodified _RGLLLYTATV_ 0 0 0 REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF REV__ENST00000588621.5_1_19:45767955-45791108:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8304443359375 2 553.832049 1105.64954 NaN NaN NaN NaN NaN NaN NaN 78.324 1 78.377 77.877 78.877 0.052452 0 0 0 0.97592 1 43252 43252 3.2813 0 1 + 52304 17001 35295 36096 60811 60811 0.10094577919790026 RGLQLAWG 8 Unmodified _RGLQLAWG_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7567749023438 2 450.756144 899.497735 1.1108 0.0005007 1.478 0.00066623 2.5888 0.0011669 450.7567854592734 66.911 0.25632 66.929 66.772 67.028 0.018028 17 11 2 0 0 0 0.80232 1 36737 36737 5.2307 0 1 3052500 52305 12057 35296 36097 60812 60812 0.043966416827515786 RGLQLAWG 8 Unmodified _RGLQLAWG_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7572937011719 2 450.756144 899.497735 1.3348 0.00060165 1.4968 0.00067468 2.8315 0.0012763 450.75658569377026 70.632 0.5159 70.668 70.463 70.979 0.035507 38 23 3 0 0 0 0.80676 1 38837 38837 2.5775 0 1 3734300 52306 12057 35296 36097 60813 60813 0.043966416827515786 RGLQTPLFLK 10 Unmodified _RGLQTPLFLK_ 0 0 0 REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF REV__ENST00000261483.4_1_5:109025676-109026051:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5767211914062 3 391.576519 1171.70773 -0.35987 -0.00014092 0.32276 0.00012639 -0.037104 -1.4529E-05 391.57666598205117 36.61 0.54906 36.631 36.393 36.942 0.021545 81 25 4 0 0 0 0.28721 1 19488 19488 28.234 6.4342 1 38859000 + 52307 24989 35297 36098 60814 60814 0.12874259565069224 RGLSPRAAA 9 Unmodified _RGLSPRAAA_ 0 0 0 REV__ENST00000589108.1_1_19:55967712-55972941:-|nuORF REV__ENST00000589108.1_1_19:55967712-55972941:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7662963867188 2 449.764501 897.514448 NaN NaN NaN NaN NaN NaN NaN 72.975 1 72.975 72.475 73.475 0 0 0 0 0.84892 1 40629 40629 1.6526 0.17072 1 + 52308 17344 35298 36099 60815 60815 0.06159142568697007 RGMEPNIVY 9 Unmodified _RGMEPNIVY_ 0 0 0 REV__nc|ENSG00000037749|P55082-2|MFAP3 REV__nc|ENSG00000037749|P55082-2|MFAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7720336914062 2 539.771134 1077.52771 0.088356 4.7692E-05 -0.97669 -0.00052719 -0.88834 -0.0004795 539.7708868828618 65.336 0.40571 64.852 64.616 65.021 -0.48428 28 18 2 0 0 0 0.1773 1 35624 35624 25.399 2.663 1 5657800 + 52309 17174 35299 36100 60816 60816 -0.007947874342335126 RGMEPNIVY 9 Unmodified _RGMEPNIVY_ 0 0 0 REV__nc|ENSG00000037749|P55082-2|MFAP3 REV__nc|ENSG00000037749|P55082-2|MFAP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.771134 1077.52771 0.61439 0.00033163 -0.50318 -0.0002716 0.11121 6.003E-05 539.770944639514 64.898 0.2792 64.898 64.718 64.997 7.6294E-06 0.022979 0.00028929 NaN 25.399 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 3632400 + 52310 17174 35299 36100 -0.007947874342335126 RGPAPGCF 8 Unmodified _RGPAPGCF_ 0 0 0 REV__ENST00000422128.5_1_2:39664577-39681021:+|nuORF REV__ENST00000422128.5_1_2:39664577-39681021:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.6952209472656 2 402.694698 803.374843 NaN NaN NaN NaN NaN NaN NaN 8.0565 1 8.0717 7.5717 8.5717 0.015238 0 0 0 0.97444 1 4017 4017 0 0 1 + 52311 26852 35300 36101 60817 60817 -0.03470938040175042 RGPGASVHDR 10 Unmodified _RGPGASVHDR_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2979125976562 2 526.273221 1050.53189 0.066338 3.4912E-05 1.815 0.00095521 1.8814 0.00099012 526.273912228936 40.709 0.30704 40.709 40.451 40.758 0 20 16 2 0 0 0 0.23103 1 21787 21787 13.615 8.8589 1 2899000 52312 10287 35301 36102 60818 60818 0.008644381037129278 RGPKGPAC 8 Unmodified _RGPKGPAC_ 0 0 0 REV__ENST00000320934.7_1_11:117100369-117100402:-|nuORF REV__ENST00000320934.7_1_11:117100369-117100402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2065734863281 2 393.207973 784.401392 -0.1099 -4.3212E-05 -0.15033 -5.9111E-05 -0.26023 -0.00010232 393.20803930057406 35.062 0.87032 35.09 34.713 35.583 0.027401 88 40 4 0 0 0 0.80992 1 18372 18372 0.69038 0 1 13005000 + 52313 25508 35302 36103 60819 60819 0.0005675085114944523 RGPKNGRF 8 Unmodified _RGPKNGRF_ 0 0 0 ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK ENSG00000143157|ENST00000367876|POGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2637939453125 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 75.148 1 75.148 74.648 75.648 0 0 0 0 0.97444 1 41808 41808 0.79363 0 1 52314 5470 35303 36104 60820 60820 0.04674562288562356 RGPPPKGR 8 Unmodified _RGPPPKGR_ 0 0 0 REV__nc|ENSG00000120913|Q96JY6-2|PDLIM2 REV__nc|ENSG00000120913|Q96JY6-2|PDLIM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8839111328125 2 432.761761 863.508969 0.18068 7.8193E-05 0.32656 0.00014132 0.50724 0.00021951 432.76202976606874 34.892 0.15462 34.92 34.818 34.973 0.027405 10 6 2 0 0 0 8.7369 1 18371 18371 5.2307 2.6532 1 894920 + 52315 29604 35304 36105 60821 60821 0.07175463776889046 RGPRWNFFA 9 Unmodified _RGPRWNFFA_ 0 0 0 ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM ENSG00000132464|ENST00000396073|ENAM MSMS AL20221201_MKP_PDAC_01 4 384.2037658691406 3 384.201675 1149.5832 NaN NaN NaN NaN NaN NaN NaN 21.973 1 19.238 18.738 19.738 -2.7348 0 0 0 0.81961 1 11802 11802 5.2969 2.5617 1 52316 4409 35305 36106 60822 60822 0.014388068684183963 RGPRWPVVF 9 Unmodified _RGPRWPVVF_ 0 0 0 REV__ENST00000397042.7_1_20:37101517-37101613:+|nuORF REV__ENST00000397042.7_1_20:37101517-37101613:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8810729980469 3 371.882054 1112.62433 NaN NaN NaN NaN NaN NaN NaN 14.524 1 14.531 14.031 15.031 0.0073986 0 0 0 0.85261 1 7203 7203 1.1933 0.735 1 + 52317 26524 35306 36107 60823 60823 0.07252567907880803 RGQCLALA 8 Unmodified _RGQCLALA_ 0 0 0 REV__ENST00000520178.3_1_8:17103802-17103883:-|nuORF REV__ENST00000520178.3_1_8:17103802-17103883:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2278442382812 2 416.228905 830.443257 0.40072 0.00016679 -1.8601 -0.00077424 -1.4594 -0.00060745 416.2280726777642 42.663 0.27039 42.654 42.516 42.786 -0.0088196 16 12 2 0 0 0 0.80975 1 22892 22892 0.79363 0 1 4559400 + 52318 28274 35307 36108 60824 60824 0.02125306539653593 RGQESIIKCL 10 Unmodified _RGQESIIKCL_ 0 0 0 REV__ENST00000511442.1_2_4:87857587-87967329:+|nuORF REV__ENST00000511442.1_2_4:87857587-87967329:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8818359375 3 382.881502 1145.62268 0.75931 0.00029073 -0.020247 -7.7522E-06 0.73906 0.00028297 382.88147485556954 57.997 0.29646 57.931 57.775 58.072 -0.066036 40 14 4 0 0 0 0.55245 1 31548 31548 12.228 0.052842 1 15463000 + 52319 28158 35308 36109 60825 60825 0.05569146036964412 RGQESIIKCL 10 Unmodified _RGQESIIKCL_ 0 0 0 REV__ENST00000511442.1_2_4:87857587-87967329:+|nuORF REV__ENST00000511442.1_2_4:87857587-87967329:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.820068359375 2 573.818615 1145.62268 0.83938 0.00048165 0.26028 0.00014935 1.0997 0.000631 573.8184957519746 58.018 0.21756 57.952 57.815 58.033 -0.066036 21 10 3 0 0 0 0.46077 1 31570 31570 18.373 3.9677 1 4350000 + 52320 28158 35308 36109 60826 60826 0.05569146036964412 RGQFVLERI 9 Unmodified _RGQFVLERI_ 0 0 0 REV__ENST00000413379.7_1_19:47713132-47713255:+|nuORF REV__ENST00000413379.7_1_19:47713132-47713255:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2206726074219 3 373.220735 1116.64038 0.055767 2.0813E-05 -0.26812 -0.00010007 -0.21236 -7.9256E-05 373.22057895676375 18.904 0.20394 18.91 18.784 18.988 0.0060463 24 10 3 0 0 0 0.13231 1 9599 9599 29.841 1.3461 1 14466000 + 52321 26732 35309 36110 60827 60827 0.08672229354147021 RGQHHPAG 8 Unmodified _RGQHHPAG_ 0 0 0 ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF;ENST00000300954.9_1_19:1483001-1487678:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF;ENST00000591201.5_1_19:1483001-1487304:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.4301147460938 1 859.428159 858.420882 1.3991 0.0012024 0.36705 0.00031545 1.7661 0.0015179 859.4285808208439 105.33 0.098228 99.158 99.108 99.206 -6.1757 33 25 2 0 0 0 0.80975 1 70572 70572 0.79363 0 1 40145000 52322 13399 35310 36111 60828 60828 -0.013991568137271315 RGQHHPAG 8 Unmodified _RGQHHPAG_ 0 0 0 ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF;ENST00000300954.9_1_19:1483001-1487678:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF;ENST00000591201.5_1_19:1483001-1487304:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 861.4366455078125 1 859.428159 858.420882 1.3983 0.0012017 1.353 0.0011628 2.7513 0.0023646 859.4290974473387 105.47 0.14062 99.294 99.218 99.359 -6.1757 69 27 3 0 0 0 0.80975 2 70645 70645;70687 0.79363 0 1 73458000 52323 13399 35310 36111 60829;60830 60829 -0.013991568137271315 RGQHRAWHL 9 Unmodified _RGQHRAWHL_ 0 0 0 ENST00000526409.5_1_11:62342313-62344193:-|nuORF ENST00000526409.5_1_11:62342313-62344193:-|nuORF ENST00000526409.5_1_11:62342313-62344193:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5453796386719 3 387.544324 1159.61114 NaN NaN NaN NaN NaN NaN NaN 24.948 1 24.948 24.448 25.448 0 0 0 0 0.82015 1 12768 12768 2.9952 0 1 52324 14817 35311 36112 60831 60831 0.037721298484939325 RGQPACGL 8 Unmodified _RGQPACGL_ 0 0 0 ENST00000380094.9_1_10:5931461-5931704:-|nuORF ENST00000380094.9_1_10:5931461-5931704:-|nuORF ENST00000380094.9_1_10:5931461-5931704:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2045288085938 2 401.20543 800.396307 0.25262 0.00010135 -0.94392 -0.00037871 -0.6913 -0.00027735 401.2043767669864 40.521 0.37959 40.526 40.316 40.695 0.0050583 57 17 4 0 0 0 0.80676 1 21631 21631 2.5775 0 1 70611000 52325 12587 35312 36113 60832 60832 -0.011875530114707544 RGQVTVGTR 9 Unmodified _RGQVTVGTR_ 0 0 0 ENST00000457686.5_1_2:242823608-242824780:+|nuORF;ENST00000429947.1_1_2:242824263-242824780:+|nuORF ENST00000457686.5_1_2:242823608-242824780:+|nuORF ENST00000457686.5_1_2:242823608-242824780:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.2804565429688 2 487.280515 972.546476 NaN NaN NaN NaN NaN NaN NaN 92.38 1 86.204 85.704 86.704 -6.1757 0 0 0 0.46232 1 61089 61089 17.113 1.8644 1 52326 13227 35313 36114 60833 60833 0.059105102518515196 RGRAAATAL 9 Unmodified _RGRAAATAL_ 0 0 0 REV__nc|ENSG00000147889|P42771-3|CDKN2A REV__nc|ENSG00000147889|P42771-3|CDKN2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7642517089844 2 443.764501 885.514448 NaN NaN NaN NaN NaN NaN NaN 80.013 1 80.013 79.513 80.513 0 0 0 0 0.8622 1 44433 44433 0 0 1 + 52327 29694 35314 36115 60834 60834 0.06711142568667583 RGRAVCFC 8 Unmodified _RGRAVCFC_ 0 0 0 ENST00000498717.2_1_3:143566672-143566723:-|nuORF ENST00000498717.2_1_3:143566672-143566723:-|nuORF ENST00000498717.2_1_3:143566672-143566723:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2212524414062 2 456.220557 910.426561 0.59193 0.00027005 0.12179 5.5562E-05 0.71371 0.00032561 456.22143295456516 79.143 0.4536 79.198 79.015 79.468 0.05497 43 17 3 0 0 0 0.80975 1 43841 43841 0.79363 0 1 10539000 52328 14429 35315 36116 60835 60835 -0.032235176179256086 RGRDATRL 8 Unmodified _RGRDATRL_ 0 0 0 ENST00000398637.9_1_12:46579638-46579734:-|nuORF ENST00000398637.9_1_12:46579638-46579734:-|nuORF ENST00000398637.9_1_12:46579638-46579734:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.769775390625 2 472.772857 943.531161 NaN NaN NaN NaN NaN NaN NaN 4.6764 1 4.6764 4.1764 5.1764 0 0 0 0 0.97444 1 2252 2252 0 0 1 52329 12853 35316 36117 60836 60836 0.057136434546350756 RGRDATRL 8 Unmodified _RGRDATRL_ 0 0 0 ENST00000398637.9_1_12:46579638-46579734:-|nuORF ENST00000398637.9_1_12:46579638-46579734:-|nuORF ENST00000398637.9_1_12:46579638-46579734:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.7727966308594 2 472.772857 943.531161 NaN NaN NaN NaN NaN NaN NaN 2.5772 1 2.5601 2.0601 3.0601 -0.017019 0 0 0 0.97444 1 1310 1310 0 0 1 52330 12853 35316 36117 60837 60837 0.057136434546350756 RGRGKGPA 8 Unmodified _RGRGKGPA_ 0 0 0 ENSG00000117318|ENST00000374561|ID3 ENSG00000117318|ENST00000374561|ID3 ENSG00000117318|ENST00000374561|ID3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.7383422851562 2 399.738286 797.462019 0.74402 0.00029741 -0.084961 -3.3962E-05 0.65906 0.00026345 399.73816611400616 74.46 0.56718 73.984 73.69 74.258 -0.47588 72 23 4 0 0 0 0.81107 1 40769 40769 0 0 1 16178000 52331 3294 35317 36118 60838 60838 0.05518604225744639 RGRGVPGR 8 Unmodified _RGRGVPGR_ 0 0 0 ENST00000321944.8_1_19:39616488-39658870:+|nuORF ENST00000321944.8_1_19:39616488-39658870:+|nuORF ENST00000321944.8_1_19:39616488-39658870:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.7557678222656 2 427.75701 853.499467 NaN NaN NaN NaN NaN NaN NaN 17.052 1 17.053 16.553 17.553 0.0010548 0 0 0 0.97444 1 8450 8450 0.69038 0 1 52332 11778 35318 36119 60839 60839 0.0668569549136464 RGRLFLKI 8 Unmodified _RGRLFLKI_ 0 0 0 REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF REV__ENST00000479185.1_1_2:218746916-218750490:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.3432312011719 2 501.832186 1001.64982 1.6683 0.00083721 -0.56439 -0.00028323 1.1039 0.00055399 501.8314581674611 107.4 0.25336 101.22 101.15 101.4 -6.1757 60 42 2 0 0 0 0.81107 1 71815 71815 0 0 1 3128100 + 52333 27649 35319 36120 60840 60840 0.14906042430288835 RGRNAPAA 8 Unmodified _RGRNAPAA_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7273254394531 2 406.727918 811.441283 0.72568 0.00029515 -0.13855 -5.6352E-05 0.58713 0.0002388 406.72772730942154 75.63 0.28091 75.153 74.932 75.212 -0.47714 21 15 2 0 0 0 0.81107 1 41339 41339 0 0 1 737240 52334 4650 35320 36121 60841 60841 0.028020138460647104 RGRRHRLQYR 10 Unmodified _RGRRHRLQYR_ 0 0 0 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 ENSG00000105278|ENST00000262961|ZFR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.6076049804688 3 466.608098 1396.80247 -0.3334 -0.00015557 0.56256 0.00026249 0.22915 0.00010693 466.6080948436624 101.14 0.16082 101.1 100.98 101.14 -0.042152 16 5 4 0 0 0 0.72482 1 56191 56191 0.13989 0.056541 1 7178600 52335 2297 35321 36122 60842 60842 0.11993630879624106 RGRRPKGPQR 10 Unmodified _RGRRPKGPQR_ 0 0 0 REV__ENST00000473958.1_1_3:128208233-128208692:+|nuORF REV__ENST00000473958.1_1_3:128208233-128208692:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2476196289062 3 403.246278 1206.717 3.9004 0.0015728 -0.42399 -0.00017097 3.4764 0.0014019 403.2460222969955 98.79 0.51891 98.761 98.559 99.077 -0.028282 58 18 6 0 0 0 0.72247 1 54933 54933 0.13989 0 1 100440000 + 52336 27450 35322 36123 60843 60843 0.12191465693967984 RGRRRRRRRRW 11 Unmodified _RGRRRRRRRRW_ 0 0 0 REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.020751953125 2 834.017947 1666.02134 NaN NaN NaN NaN NaN NaN NaN 80.93 1 80.99 80.49 81.49 0.059929 0 0 0 0.9435 1 44749 44749 0 0 1 + 52337 25232 35323 36124 60844 60844 0.21497079961659438 RGRRRRRRRRW 11 Unmodified _RGRRRRRRRRW_ 0 0 0 REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF REV__ENST00000288502.8_2_9:117373626-117379440:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.0193481445312 2 834.017947 1666.02134 NaN NaN NaN NaN NaN NaN NaN 101.91 1 101.87 101.37 102.37 -0.045853 0 0 0 0.9435 1 56615 56615 0 0 1 + 52338 25232 35323 36124 60845 60845 0.21497079961659438 RGRWRRRWGWR 11 Unmodified _RGRWRRRWGWR_ 0 0 0 ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 814.4588012695312 2 814.456325 1626.8981 NaN NaN NaN NaN NaN NaN NaN 102.26 1 96.089 95.589 96.589 -6.1757 0 0 0 0.9435 1 68631 68631 0 0 1 52339 11011 35324 36125 60846 60846 0.10972403790515273 RGSEFNPIY 9 Unmodified _RGSEFNPIY_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7686157226562 2 541.766906 1081.51926 0.238 0.00012894 1.1212 0.00060745 1.3592 0.00073639 541.7676661869341 40.192 0.24943 35.663 35.608 35.858 -4.5294 26 19 2 0 0 0 0.10734 1 24073 24073 32.305 0 1 11872000 + 52340 17692 35325 36126 60847 60847 -0.018240180791963212 RGSKRKVF 8 Unmodified _RGSKRKVF_ 0 0 0 ENSG00000119703|ENST00000524913|ZC2HC1C ENSG00000119703|ENST00000524913|ZC2HC1C ENSG00000119703|ENST00000524913|ZC2HC1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.3054809570312 2 489.303793 976.593033 1.5456 0.00075626 -0.60245 -0.00029478 0.94314 0.00046148 489.3039448562967 105.23 0.12256 99.052 98.999 99.122 -6.1757 68 30 3 0 0 0 0.80722 1 70472 70472 2.3027 0 1 209160000 52341 3459 35326 36127 60848 60848 0.10379994873801479 RGSLARAAL 9 Unmodified _RGSLARAAL_ 0 0 0 ENSG00000118181|ENST00000527673|RPS25;ENST00000418538.1_1_3:53508733-53508949:-|nuORF ENSG00000118181|ENST00000527673|RPS25 ENSG00000118181|ENST00000527673|RPS25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7798767089844 2 457.780151 913.545748 0.38555 0.0001765 -0.77842 -0.00035635 -0.39287 -0.00017985 457.7799847359507 22.373 0.10887 22.39 22.305 22.414 0.01749 7 4 2 0 0 0 0.46501 1 11493 11493 9.3831 1.473 1 1161100 52342 3354 35327 36128 60849 60849 0.08551715602800414 RGSPEEELPL 10 Unmodified _RGSPEEELPL_ 0 0 0 nc|ENSG00000137221|Q5JTD0-2|TJAP1;ENSG00000137221|ENST00000372449|TJAP1;ENST00000454762.1_1_6:43472456-43473590:+|nuORF;nc|ENSG00000137221|Q5JTD0-4|TJAP1 nc|ENSG00000137221|Q5JTD0-2|TJAP1 nc|ENSG00000137221|Q5JTD0-2|TJAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1974487304688 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 52.431 1 52.431 51.931 52.931 0 0 0 0 0.97302 1 29015 29015 1.7423 0 1 52343 4914 35328 36129 60850 60850 0.008842164011412024 RGSTWLDCSQ 10 Unmodified _RGSTWLDCSQ_ 0 0 0 REV__ENST00000425217.5_2_12:117904834-117909018:-|nuORF REV__ENST00000425217.5_2_12:117904834-117909018:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5823059082031 3 384.841595 1151.50296 -0.054248 -2.0877E-05 -1.3315 -0.00051243 -1.3858 -0.00053331 384.8411133234635 33.173 0.1808 33.202 33.093 33.274 0.028934 17 7 3 0 0 0 0.23991 1 17396 17396 0.62683 0 1 1983700 + 52344 26888 35329 36130 60851 60851 -0.06673467307609826 RGTAEPFPRL 10 Unmodified _RGTAEPFPRL_ 0 0 0 nc|ENSG00000174015|Q8NA61-2|CBY2;ENSG00000174015|ENST00000310521|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 nc|ENSG00000174015|Q8NA61-2|CBY2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.26904296875 2 572.317097 1142.61964 0.56459 0.00032312 -1.724 -0.00098668 -1.1594 -0.00066356 572.3158547939801 66.969 0.31511 66.969 66.77 67.085 0 23 14 2 0 0 0 0.23745 1 37256 37256 5.7319 0.97584 1 2078700 52345 8385 35330 36131 60852 60852 0.0540363897446241 RGTMGALRFVY 11 Unmodified _RGTMGALRFVY_ 0 0 0 REV__ENSG00000197912|ENST00000645818|SPG7 REV__ENSG00000197912|ENST00000645818|SPG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8386840820312 2 635.839882 1269.66521 0.080822 5.139E-05 -0.79673 -0.0005066 -0.71591 -0.00045521 635.8391731505604 78.161 0.26166 78.161 78.03 78.291 0 27 10 3 0 0 0 0.61059 1 43415 43415 10.8 4.0763 1 1520300 + 52346 23968 35331 36132 60853 60853 0.041165411652173134 RGTMGALRFVY 11 Unmodified _RGTMGALRFVY_ 0 0 0 REV__ENSG00000197912|ENST00000645818|SPG7 REV__ENSG00000197912|ENST00000645818|SPG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.4598999023438 2 635.839882 1269.66521 0.087267 5.5488E-05 -3.2536 -0.0020687 -3.1663 -0.0020133 635.8377333051918 96.664 0.20639 96.664 96.62 96.826 0 18 10 2 0 0 0 0.721 1 53443 53443 2.2828 0.80087 1 429080 + 52347 23968 35331 36132 60854 60854 0.041165411652173134 RGTWLRPF 8 Unmodified _RGTWLRPF_ 0 0 0 REV__ENST00000369550.9_1_X:153991185-153991239:+|nuORF REV__ENST00000369550.9_1_X:153991185-153991239:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7897338867188 2 516.790518 1031.56648 NaN NaN NaN NaN NaN NaN NaN 97.069 1 97.069 96.569 97.569 0 0 0 0 0.97444 1 53637 53637 2.3027 0.4585 1 + 52348 26038 35332 36133 60855 60855 0.051963059824629454 RGTYLPQTYII 11 Unmodified _RGTYLPQTYII_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.8670043945312 2 662.86662 1323.71869 1.2556 0.00083231 -0.59039 -0.00039135 0.66522 0.00044096 662.8661782191865 66.03 0.27337 66.04 65.873 66.146 0.0095673 34 13 3 0 0 0 0.33612 1 36182 36182 24.882 4.467 1 12276000 52349 4756 35333 36134 60856 60856 0.06977617148709214 RGVKPVKEL 9 Unmodified _RGVKPVKEL_ 0 0 0 REV__ENSG00000038210|ENST00000264864|PI4K2B REV__ENSG00000038210|ENST00000264864|PI4K2B MSMS AL20221201_MKP_PDAC_01 4 513.3264770507812 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 102.82 1 96.645 96.145 97.145 -6.1757 0 0 0 0.84564 1 68979 68979 2.0598 0 1 + 52350 17175 35334 36135 60857 60857 0.12798014985219197 RGVVPDCANGY 11 Unmodified _RGVVPDCANGY_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1819763183594 3 384.181841 1149.52369 0.50896 0.00019553 -0.19771 -7.5955E-05 0.31125 0.00011958 384.1817195546326 47.827 0.21063 47.827 47.725 47.936 0 20 9 3 0 0 0 0.71341 1 26196 26196 2.6312 0 1 1892700 52351 9204 35335 36136 60858 60858 -0.0450887692793458 RGWDLKKAV 9 Unmodified _RGWDLKKAV_ 0 0 0 REV__ENST00000441645.1_1_2:237317014-237317317:-|nuORF REV__ENST00000441645.1_1_2:237317014-237317317:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.295654296875 2 536.816733 1071.61891 -0.26862 -0.0001442 2.7087 0.0014541 2.4401 0.0013099 536.8184812188497 61.395 0.23013 60.906 60.756 60.986 -0.48932 19 10 2 0 0 0 0.20358 1 33433 33433 10.074 2.1638 1 2641300 + 52352 27092 35336 36137 60859 60859 0.08596844325415987 RGWGWGQGF 9 Unmodified _RGWGWGQGF_ 0 0 0 nc|ENSG00000170291|Q8TE02-2|ELP5 nc|ENSG00000170291|Q8TE02-2|ELP5 nc|ENSG00000170291|Q8TE02-2|ELP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.748291015625 2 525.74885 1049.48315 NaN NaN NaN NaN NaN NaN NaN 60.699 1 60.21 59.71 60.71 -0.48932 0 0 0 0.6032 1 33056 33056 12.532 4.6214 1 52353 16377 35337 36138 60860 60860 -0.03961430465392368 RGWPASVPL 9 Unmodified _RGWPASVPL_ 0 0 0 nc|ENSG00000129467|Q8NFM4-2|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7776489257812 2 491.777077 981.5396 0.2852 0.00014025 0.32521 0.00015993 0.61041 0.00030019 491.77703510124985 68.947 0.38605 68.947 68.717 69.103 0 28 16 2 0 0 0 0.41742 1 38353 38353 11.64 2.2929 1 1798300 52354 16182 35338 36139 60861 60861 0.04809197371275786 RGWPASVPL 9 Unmodified _RGWPASVPL_ 0 0 0 nc|ENSG00000129467|Q8NFM4-2|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4 nc|ENSG00000129467|Q8NFM4-2|ADCY4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.777077 981.5396 0.2852 0.00014025 0.32521 0.00015993 0.61041 0.00030019 491.77703510124985 68.947 0.38605 68.947 68.717 69.103 0 0 0 NaN 11.64 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1798300 52355 16182 35338 36139 0.04809197371275786 RGYLLDECL 9 Unmodified _RGYLLDECL_ 0 0 0 REV__ENSG00000135698|ENST00000258169|MPHOSPH6 REV__ENSG00000135698|ENST00000258169|MPHOSPH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.27197265625 2 541.270967 1080.52738 -0.12351 -6.6852E-05 1.9055 0.0010314 1.782 0.00096457 541.7744076152093 60.283 0.25599 59.792 59.63 59.886 -0.49079 31 12 3 0 0 0 0.1773 1 32839 32839 25.399 2.663 1 12319000 + 52356 20091 35339 36140 60862 60862 -0.00966207154078802 RGYLLPVY 8 Unmodified _RGYLLPVY_ 0 0 0 ENST00000590532.2_1_18:47361759-47363231:-|nuORF ENST00000590532.2_1_18:47361759-47363231:-|nuORF ENST00000590532.2_1_18:47361759-47363231:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.253662109375 2 490.781828 979.549102 0.35955 0.00017646 0.33524 0.00016453 0.6948 0.00034099 490.781972373928 45.382 0.20399 40.427 40.32 40.524 -4.9549 19 13 2 0 0 0 8.7369 1 27768 27768 15.768 2.2603 1 10505000 52357 15687 35340 36141 60863 60863 0.05850965656804874 RGYNHRNEL 9 Unmodified _RGYNHRNEL_ 0 0 0 REV__ENSG00000164500|ENST00000297001|SPATA48 REV__ENSG00000164500|ENST00000297001|SPATA48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8623657226562 3 386.863611 1157.569 0.36679 0.0001419 -3.0859 -0.0011938 -2.7191 -0.0010519 386.8621961480457 59.889 0.22972 59.889 59.839 60.068 0 16 10 2 0 0 0 0.25681 1 33397 33397 13.615 4.0709 1 1834300 + 52358 21919 35341 36142 60864 60864 -0.003478903505310882 RHAGRLHLL 9 Unmodified _RHAGRLHLL_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2207336425781 3 358.22107 1071.64138 0.036596 1.311E-05 -0.1342 -4.8073E-05 -0.097602 -3.4963E-05 358.2210522214433 20.874 0.26321 20.885 20.776 21.039 0.010551 35 16 3 0 0 0 0.070838 1 10635 10635 36.506 12.486 1 6582700 52359 10361 35342 36143 60865 60865 0.10842488513708304 RHAGRLHLL 9 Unmodified _RHAGRLHLL_ 0 0 0 ENST00000565539.5_1_16:57684180-57697491:+|nuORF;ENST00000564907.5_1_16:57684180-57697491:+|nuORF;ENSG00000205336|ENST00000562631|ADGRG1;nc|ENSG00000205336|Q9Y653-3|ADGRG1;nc|ENSG00000205336|Q9Y653|ADGRG1;ENST00000564912.5_1_16:57684199-57687923:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF ENST00000565539.5_1_16:57684180-57697491:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2221374511719 3 358.22107 1071.64138 1.8763 0.00067212 0.14785 5.2962E-05 2.0241 0.00072508 358.22111876087695 94.127 0.79549 87.951 87.504 88.299 -6.1757 84 46 3 0 0 0 0.06187 1 62274 62274 38.176 5.8701 1 14221000 52360 10361 35342 36143 60866 60866 0.10842488513708304 RHCHDHVF 8 Unmodified _RHCHDHVF_ 0 0 0 REV__ENSG00000137825|ENST00000260386|ITPKA REV__ENSG00000137825|ENST00000260386|ITPKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.234619140625 2 525.73796 1049.46137 0.40288 0.00021181 2.3029 0.0012107 2.7058 0.0014225 525.7388015972016 64.542 0.94465 64.542 63.974 64.919 0 82 34 4 0 0 0 0.80143 1 35929 35929 5.7604 1.0044 1 6365100 + 52361 20272 35343 36144 60867 60867 -0.06138558485622525 RHCQDEHDN 9 Unmodified _RHCQDEHDN_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ENST00000444273.6_1_6:56954967-57015704:+|nuORF nc|ENSG00000112200|Q9Y4E5-2|ZNF451 nc|ENSG00000112200|Q9Y4E5-2|ZNF451 MSMS AL20221201_MKP_PDAC_01 4 385.1536254882812 3 385.152832 1152.43667 NaN NaN NaN NaN NaN NaN NaN 7.8715 1 5.3896 4.8896 5.8896 -2.482 0 0 0 0.86054 1 3973 3973 0.20686 0 1 52362 2868 35344 36145 60868 60868 -0.13345283149647003 RHCQHCGWHYW 11 Unmodified _RHCQHCGWHYW_ 0 0 0 ENST00000533705.5_1_9:86292703-86292778:-|nuORF ENST00000533705.5_1_9:86292703-86292778:-|nuORF ENST00000533705.5_1_9:86292703-86292778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.8780212402344 3 504.876868 1511.60878 0.045814 2.313E-05 0.76122 0.00038432 0.80704 0.00040746 504.8773582602361 23.962 0.40522 23.962 23.752 24.157 0 47 19 3 0 0 0 0.74157 1 12232 12232 0.094841 0 1 1037800 52363 14941 35345 36146 60869 60869 -0.12656409943110702 RHDKAVQRF 9 Unmodified _RHDKAVQRF_ 0 0 0 ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1 ENSG00000166342|ENST00000327305|NETO1 ENSG00000166342|ENST00000327305|NETO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2175598144531 3 386.215984 1155.62612 NaN NaN NaN NaN NaN NaN NaN 50.393 1 50.345 49.845 50.845 -0.048824 0 0 0 0.82283 1 27251 27251 4.897 3.4419 1 52364 7474 35346 36147 60870 60870 0.054535769258336586 RHEEWLNDLHK 11 Unmodified _RHEEWLNDLHK_ 0 0 0 REV__ENSG00000013561|ENST00000394520|RNF14 REV__ENSG00000013561|ENST00000394520|RNF14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 738.8685913085938 2 738.870756 1475.72696 NaN NaN NaN NaN NaN NaN NaN 15.77 1 15.775 15.275 16.275 0.0051832 0 0 0 0.94313 1 7875 7875 0.26902 0 1 + 52365 17077 35347 36148 60871 60871 0.008125641180413368 RHEQSAPAL 9 Unmodified _RHEQSAPAL_ 0 0 0 nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7629089355469 2 504.764697 1007.51484 1.2233 0.00061747 -2.0822 -0.001051 -0.85895 -0.00043357 504.762662347864 37.557 0.48174 33.274 33.023 33.505 -4.2835 63 28 3 0 0 0 0.047788 1 22086 22086 45.7 5.7499 1 36699000 52366 4543 35348 36149 60872 60872 0.01138517497884095 RHEREQREY 9 Unmodified _RHEREQREY_ 0 0 0 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822937011719 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 88.435 1 88.435 87.935 88.935 0 0 0 0 0.85798 1 48950 48950 0.23584 0.095952 1 + 52367 21222 35349 36150 60873 60873 -0.01625137638666274 RHEREQREY 9 Unmodified _RHEREQREY_ 0 0 0 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8824157714844 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 35.116 1 35.144 34.644 35.644 0.027401 0 0 0 0.82396 1 18543 18543 2.7352 0 1 + 52368 21222 35349 36150 60874 60874 -0.01625137638666274 RHEREQREY 9 Unmodified _RHEREQREY_ 0 0 0 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 REV__nc|ENSG00000154305|Q5JRA6-4|MIA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8823852539062 3 434.881441 1301.62249 NaN NaN NaN NaN NaN NaN NaN 35.535 1 35.56 35.06 36.06 0.024967 0 0 0 0.84564 1 18789 18789 1.0715 0 1 + 52369 21222 35349 36150 60875 60875 -0.01625137638666274 RHETGGVLFF 10 Unmodified _RHETGGVLFF_ 0 0 0 REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2059326171875 3 388.204974 1161.59309 0.043716 1.6971E-05 0.28178 0.00010939 0.3255 0.00012636 388.2050658484193 20.636 0.18567 20.647 20.535 20.72 0.010553 17 7 3 0 0 0 0.67033 1 10514 10514 3.3196 0 1 3580900 + 52370 16897 35350 36151 60876 60876 0.018759500831492915 RHETGGVLFF 10 Unmodified _RHETGGVLFF_ 0 0 0 REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.204974 1161.59309 0.043716 1.6971E-05 0.28178 0.00010939 0.3255 0.00012636 388.2050658484193 20.636 0.18567 20.647 20.535 20.72 0.010553 -0.0039012 -0.00069438 NaN 3.3196 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3580900 + 52371 16897 35350 36151 0.018759500831492915 RHETGGVLFF 10 Unmodified _RHETGGVLFF_ 0 0 0 REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant REV__CSMD3|p.A3445V|1|0.1|ENSG00000164796|chr8:112244462-112244462|G/A|missense_variant MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 388.204974 1161.59309 0.51756 0.00020092 1.3448 0.00052207 1.8624 0.00072299 388.20552328090923 23.433 0.28211 20.655 20.492 20.774 -2.7784 0.0039012 0.00054366 NaN 3.3196 43 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10232000 + 52372 16897 35350 36151 0.018759500831492915 RHEVNKWEGLR 11 Unmodified _RHEVNKWEGLR_ 0 0 0 ENST00000391835.1_1_19:50380666-50380804:-|nuORF ENST00000391835.1_1_19:50380666-50380804:-|nuORF ENST00000391835.1_1_19:50380666-50380804:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.384521484375 2 712.381291 1422.74803 0.90494 0.00064466 1.4355 0.0010226 2.3404 0.0016673 712.3826078692172 91.992 0.52239 85.816 85.53 86.053 -6.1757 68 30 3 0 0 0 0.557 1 60812 60812 8.1555 0.54658 1 21044000 52373 12655 35351 36152 60877 60877 0.05356574217535126 RHFIGLQT 8 Unmodified _RHFIGLQT_ 0 0 0 ENSG00000171126|ENST00000306078|KCNG3;nc|ENSG00000171126|Q8TAE7-2|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2739868164062 2 486.274701 970.534849 0.24969 0.00012142 -1.2244 -0.0005954 -0.97472 -0.00047398 486.2738139195893 90.808 0.33181 90.808 90.595 90.927 0 23 13 2 0 0 0 0.80992 1 50279 50279 0.69038 0 1 617860 52374 8066 35352 36153 60878 60878 0.048403132284988715 RHFWMLVL 8 Unmodified _RHFWMLVL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8716735839844 3 367.87239 1100.59534 -0.46936 -0.00017266 -1.2654 -0.00046549 -1.7347 -0.00063816 367.8718551511363 19.643 0.16399 19.643 19.564 19.728 0 67 27 3 0 0 0 0.78849 1 9815 9815 6.7232 1.8262 1 2554400 52375 7163;16335 35353 36154 60879 60879 0.04906707287250356 RHFWMLVL 8 Unmodified _RHFWMLVL_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-2|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8722839355469 3 367.87239 1100.59534 NaN NaN NaN NaN NaN NaN NaN 19.566 1 19.594 19.094 20.094 0.028357 0 0 0 0.97444 1 9873 9873 1.6526 0.58116 1 52376 7163;16335 35353 36154 60880 60880 0.04906707287250356 RHGHAIVI 8 Unmodified _RHGHAIVI_ 0 0 0 ENST00000488625.6_1_10:31817321-31817384:+|nuORF ENST00000488625.6_1_10:31817321-31817384:+|nuORF ENST00000488625.6_1_10:31817321-31817384:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 451.7690124511719 2 451.769586 901.524619 NaN NaN NaN NaN NaN NaN NaN 19.428 1 16.772 16.272 17.272 -2.6564 0 0 0 0.43098 1 10289 10289 49.669 0 1 52377 14225 35354 36155 60881 60881 0.06991750293946097 RHGHGRGPCP 10 Unmodified _RHGHGRGPCP_ 0 0 0 REV__ENSG00000110169|ENST00000265983|HPX REV__ENSG00000110169|ENST00000265983|HPX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.0287170410156 3 358.510514 1072.50971 -0.58119 -0.00020836 -0.06449 -2.312E-05 -0.64568 -0.00023148 358.5105637773808 16.921 0.15484 16.922 16.839 16.994 0.0010529 79 49 2 0 0 0 0.24012 1 8412 8412 0 0 1 606710 + 52378 18694 35355 36156 60882 60882 -0.023640648457103453 RHGHGRGPCP 10 Unmodified _RHGHGRGPCP_ 0 0 0 REV__ENSG00000110169|ENST00000265983|HPX REV__ENSG00000110169|ENST00000265983|HPX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 358.510514 1072.50971 -0.044083 -1.5804E-05 -0.31547 -0.0001131 -0.35955 -0.0001289 358.51073767957087 16.537 0.15745 16.542 16.473 16.63 0.0050564 -0.19016 -0.00023836 NaN 0 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 228400 + 52379 18694 35355 36156 -0.023640648457103453 RHGHVRSL 8 Unmodified _RHGHVRSL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2746276855469 2 481.275567 960.53658 NaN NaN NaN NaN NaN NaN NaN 72.949 1 72.949 72.449 73.449 0 0 0 0 0.97444 1 40615 40615 2.5775 0.27475 1 52380 3013 35356 36157 60883 60883 0.05473367037131993 RHGRLTWR 8 Unmodified _RHGRLTWR_ 0 0 0 ENST00000560634.1_1_15:84858634-84860056:+|nuORF;ENST00000558229.1_15:82983798-82985220:-|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF ENST00000560634.1_1_15:84858634-84860056:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2080688476562 3 361.209053 1080.60533 NaN NaN NaN NaN NaN NaN NaN 94.423 1 94.003 93.503 94.503 -0.42044 0 0 0 0.97444 1 51588 51588 0.45834 0 1 52381 15312 35357 36158 60884 60884 0.06825031336802567 RHHFSWFWFF 10 Unmodified _RHHFSWFWFF_ 0 0 0 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.5724182128906 3 499.57188 1495.69381 NaN NaN NaN NaN NaN NaN NaN 19.048 1 19.048 18.548 19.548 0 0 0 0 1.0047 1 9505 9505 0.15932 0.064481 1 + 52382 29827 35358 36159 60885 60885 -0.03420973143374795 RHHKKSKKS 9 Unmodified _RHHKKSKKS_ 0 0 0 REV__nc|ENSG00000196504|O75400-2|PRPF40A REV__nc|ENSG00000196504|O75400-2|PRPF40A MSMS AL20221201_MKP_PDAC_01 4 379.2398681640625 3 379.231746 1134.67341 NaN NaN NaN NaN NaN NaN NaN 105.38 1 99.205 98.705 99.705 -6.1757 0 0 0 0.84737 1 70614 70614 0.96228 0 1 + 52383 23836 35359 36160 60886 60886 0.11145856196844761 RHIFPRFY 8 Unmodified _RHIFPRFY_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2090148925781 3 379.210171 1134.60868 1.3028 0.00049405 -0.054281 -2.0584E-05 1.2486 0.00047346 379.5451203181494 34.575 0.69518 30.48 30.023 30.718 -4.0951 90 40 4 0 0 0 0.80383 2 19902 19902;20029 4.3292 1.8308 1 36412000 52384 9210 35360 36161 60887;60888 60887 0.04676281390857184 RHIQAEVQL 9 Unmodified _RHIQAEVQL_ 0 0 0 nc|ENSG00000196169|Q2TAC6-3|KIF19;ENST00000359939.10_1_17:72322488-72347101:+|nuORF;nc|ENSG00000196169|Q2TAC6-2|KIF19;ENST00000547389.1_1_17:72322488-72347101:+|nuORF;ENSG00000196169|ENST00000389916|KIF19 nc|ENSG00000196169|Q2TAC6-3|KIF19 nc|ENSG00000196169|Q2TAC6-3|KIF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2084350585938 3 365.208607 1092.60399 -0.34006 -0.00012419 0.21729 7.9357E-05 -0.12276 -4.4834E-05 365.20855535309914 23.839 0.18349 23.839 23.752 23.936 0 11 8 2 0 0 0 0.54444 1 12161 12161 2.7352 0 1 450560 52385 9773 35361 36162 60889 60889 0.0613935245742141 RHISTQDTFL 10 Unmodified _RHISTQDTFL_ 0 0 0 REV__ENSG00000136925|ENST00000341170|TSTD2 REV__ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8819274902344 3 406.547288 1216.62004 -0.23469 -9.5412E-05 1.4587 0.00059305 1.2241 0.00049764 406.54783803431314 33.555 0.23695 33.396 33.27 33.507 -0.15918 14 9 2 0 0 0 0.56348 1 17519 17519 15.739 3.5639 1 1200800 + 52386 20198 35362 36163 60890 60890 0.020390139036408073 RHISTQDTFL 10 Unmodified _RHISTQDTFL_ 0 0 0 REV__ENSG00000136925|ENST00000341170|TSTD2 REV__ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5466918945312 3 406.547288 1216.62004 1.0662 0.00043346 -1.0716 -0.00043565 -0.0053791 -2.1869E-06 406.5465745454606 36.841 0.39355 32.558 32.388 32.782 -4.2835 46 23 3 0 0 0 0.14923 1 21536 21536 34.222 4.7846 1 11945000 + 52387 20198 35362 36163 60891 60891 0.020390139036408073 RHISTQDTFL 10 Unmodified _RHISTQDTFL_ 0 0 0 REV__ENSG00000136925|ENST00000341170|TSTD2 REV__ENSG00000136925|ENST00000341170|TSTD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 406.547288 1216.62004 -0.23469 -9.5412E-05 1.4587 0.00059305 1.2241 0.00049764 406.54783803431314 33.555 0.23695 33.396 33.27 33.507 -0.15918 0 0 NaN 15.739 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1200800 + 52388 20198 35362 36163 0.020390139036408073 RHKRRRILKER 11 Unmodified _RHKRRRILKER_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.6674194335938 3 516.665836 1546.97568 NaN NaN NaN NaN NaN NaN NaN 12.145 1 12.081 11.581 12.581 -0.064889 0 0 0 0.9435 1 5902 5902 0 0 1 + 52389 22907 35363 36164 60892 60892 0.22406996936069845 RHKRRRILKER 11 Unmodified _RHKRRRILKER_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.6663818359375 3 516.665836 1546.97568 NaN NaN NaN NaN NaN NaN NaN 2.1031 1 2.0861 1.5861 2.5861 -0.017019 0 0 0 0.9435 1 1075 1075 0 0 1 + 52390 22907 35363 36164 60893 60893 0.22406996936069845 RHKRRRILKER 11 Unmodified _RHKRRRILKER_ 0 0 0 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 REV__nc|ENSG00000176049|Q96AA8-4|JAKMIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.6668701171875 3 516.665836 1546.97568 NaN NaN NaN NaN NaN NaN NaN 8.8817 1 8.8993 8.3993 9.3993 0.017581 0 0 0 0.9435 1 4414 4414 0 0 1 + 52391 22907 35363 36164 60894 60894 0.22406996936069845 RHLAYLKWIS 10 Unmodified _RHLAYLKWIS_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3740844726562 2 643.87204 1285.72953 0.62694 0.00040367 0.4744 0.00030545 1.1013 0.00070912 644.3739512570829 75.916 1.468 69.74 68.963 70.431 -6.1757 254 80 4 0 0 0 0.6067 1 49821 49821 10.8 0.72558 1 72031000 52392 4681 35364 36165 60895 60895 0.0980906431366293 RHLDTLHNF 9 Unmodified _RHLDTLHNF_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8428344726562 3 384.868473 1151.58359 -0.50309 -0.00019362 0.89285 0.00034363 0.38976 0.00015001 384.8689809088037 25.789 0.14577 25.789 25.737 25.883 0 14 6 3 0 0 0 0.21564 1 13259 13259 2.2828 0.3764 1 885430 52393 6155;16276;16275;14741 35365 36166 60896 60896 0.013861817976021484 RHLHYIHF 8 Unmodified _RHLHYIHF_ 0 0 0 ENST00000219139.7_1_16:67181483-67181936:+|nuORF ENST00000219139.7_1_16:67181483-67181936:+|nuORF ENST00000219139.7_1_16:67181483-67181936:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.2041625976562 3 374.870037 1121.58828 -0.40236 -0.00015083 -1.4103 -0.00052868 -1.8126 -0.00067951 374.86933937113156 21.41 0.14755 21.41 21.341 21.489 0 41 20 3 0 0 0 0.80799 1 10872 10872 1.8442 0.6509 1 2191600 52394 11021 35366 36167 60897 60897 0.03235110731020541 RHLKALDKR 9 Unmodified _RHLKALDKR_ 0 0 0 REV__nc|ENSG00000100568|Q9UEU0-2|VTI1B REV__nc|ENSG00000100568|Q9UEU0-2|VTI1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.853759765625 2 568.854181 1135.69381 1.0777 0.00061305 -1.033 -0.00058761 0.044719 2.5439E-05 568.8534339574559 100.5 0.23111 94.323 94.187 94.418 -6.1757 42 14 4 0 0 0 0.55373 1 67153 67153 3.5965 0 1 282140000 + 52395 18081 35367 36168 60898 60898 0.13139026856629243 RHLLVLLLLL 10 Unmodified _RHLLVLLLLL_ 0 0 0 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 ENSG00000104901|ENST00000221498|DKKL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1202.34423828125 1 1202.83473 1201.82745 -0.42316 -0.00050899 1.36 0.0016358 0.9368 0.0011268 1202.8378324888818 97.777 0.078285 97.777 97.711 97.789 0 4 2 2 0 0 0 0.24012 1 54008 54008 0 0 1 252020 52396 2257 35368 36169 60899 60899 0.23460872909663522 RHLPFHCPH 9 Unmodified _RHLPFHCPH_ 0 0 0 REV__ENST00000593460.1_1_19:18120319-18120565:+|nuORF REV__ENST00000593460.1_1_19:18120319-18120565:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8577575683594 3 381.859144 1142.5556 NaN NaN NaN NaN NaN NaN NaN 33.224 1 33.253 32.753 33.753 0.028934 0 0 0 0.84385 1 17473 17473 2.2828 1.2113 1 + 52397 29192 35369 36170 60900 60900 -0.009974196634630061 RHLPFHCPH 9 Unmodified _RHLPFHCPH_ 0 0 0 REV__ENST00000593460.1_1_19:18120319-18120565:+|nuORF REV__ENST00000593460.1_1_19:18120319-18120565:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8578186035156 3 381.859144 1142.5556 NaN NaN NaN NaN NaN NaN NaN 34.049 1 34.078 33.578 34.578 0.028934 0 0 0 0.84385 1 17934 17934 2.2828 0 1 + 52398 29192 35369 36170 60901 60901 -0.009974196634630061 RHLQRHIL 8 Unmodified _RHLQRHIL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.221435546875 3 358.22107 1071.64138 1.8763 0.00067212 0.14785 5.2962E-05 2.0241 0.00072508 358.22111876087695 94.127 0.79549 87.951 87.504 88.299 -6.1757 84 46 3 0 0 0 0.40035 1 62400 62400 43.858 0.085901 1 14221000 52399 448 35370 36171 60902 60902 0.10842488513708304 RHLRCTLL 8 Unmodified _RHLRCTLL_ 0 0 0 ENST00000464038.5_1_2:31155024-31369832:-|nuORF;ENST00000455477.5_1_2:31155024-31348064:-|nuORF;nc|ENSG00000158089|Q96FL9-4|GALNT14;ENSG00000158089|ENST00000349752|GALNT14 ENST00000464038.5_1_2:31155024-31369832:-|nuORF ENST00000464038.5_1_2:31155024-31369832:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7955932617188 2 506.297653 1010.58075 1.0724 0.00054295 0.73341 0.00037133 1.8058 0.00091427 506.2984816626866 94.593 1.3326 88.417 87.898 89.23 -6.1757 230 76 4 0 0 0 0.58902 1 63017 63017 26.884 3.7352 1 133550000 52400 13706 35371 36172 60903 60903 0.07588635139109101 RHLTRCLL 8 Unmodified _RHLTRCLL_ 0 0 0 ENST00000372802.5_2_1:40525091-40525804:+|nuORF ENST00000372802.5_2_1:40525091-40525804:+|nuORF ENST00000372802.5_2_1:40525091-40525804:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7950439453125 2 506.297653 1010.58075 1.0724 0.00054295 0.73341 0.00037133 1.8058 0.00091427 506.2984816626866 94.593 1.3326 88.417 87.898 89.23 -6.1757 230 76 4 0 0 0 0.57045 1 63142 63142 28.487 6.7402 1 133550000 52401 12392 35372 36173 60904 60904 0.07588635139109101 RHNLKKLF 8 Unmodified _RHNLKKLF_ 0 0 0 REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF REV__ENST00000377325.1_1_6:28056349-28056487:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.327392578125 2 528.327268 1054.63998 NaN NaN NaN NaN NaN NaN NaN 80.325 1 79.836 79.336 80.336 -0.48932 0 0 0 0.97444 1 43992 43992 2.5775 0 1 + 52402 26246 35373 36174 60905 60905 0.11484854424929836 RHPAEWRL 8 Unmodified _RHPAEWRL_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2952270507812 2 532.79105 1063.56755 0.39498 0.00021044 1.846 0.00098352 2.241 0.001194 533.2950581128456 40.308 0.37305 40.011 39.804 40.177 -0.29716 27 17 2 0 0 0 0.78849 1 21256 21256 9.3474 0.75416 1 2706600 52403 3348 35374 36175 60906 60906 0.03830520351357336 RHPAVCPRPV 10 Unmodified _RHPAVCPRPV_ 0 0 0 ENST00000508859.6_1_5:751252-755178:-|nuORF ENST00000508859.6_1_5:751252-755178:-|nuORF ENST00000508859.6_1_5:751252-755178:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 377.87939453125 3 377.878315 1130.61312 NaN NaN NaN NaN NaN NaN NaN 18.992 1 16.37 15.87 16.87 -2.6215 0 0 0 0.95103 1 10033 10033 3.0723 0 1 52404 14569 35375 36176 60907 60907 0.05303422542078806 RHPHIVHVF 9 Unmodified _RHPHIVHVF_ 0 0 0 ENSG00000178093|ENST00000585580|TSSK6 ENSG00000178093|ENST00000585580|TSSK6 ENSG00000178093|ENST00000585580|TSSK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2177734375 3 381.217437 1140.63048 0.77991 0.00029731 -0.081077 -3.0908E-05 0.69883 0.00026641 381.2172696959634 57.88 0.43948 57.814 57.614 58.053 -0.066036 63 21 4 0 0 0 0.58145 1 31467 31467 2.4985 1.8717 1 8551000 52405 8730 35376 36177 60908 60908 0.06579086139413448 RHPPRTEKRKR 11 Unmodified _RHPPRTEKRKR_ 0 0 0 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MSMS AL20221201_MKP_PDAC_01 4 487.6259155273438 3 487.627158 1459.85965 NaN NaN NaN NaN NaN NaN NaN 107.67 1 101.5 101 102 -6.1757 0 0 0 0.94337 1 72001 72001 0.094841 0 1 52406 6686 35377 36178 60909 60909 0.14811053365338012 RHPPRTEKRKR 11 Unmodified _RHPPRTEKRKR_ 0 0 0 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MSMS AL20221201_MKP_PDAC_01 4 487.2916259765625 3 487.627158 1459.85965 NaN NaN NaN NaN NaN NaN NaN 108.5 1 102.32 101.82 102.82 -6.1757 0 0 0 0.94337 1 72510 72510 0.094841 0.011491 1 52407 6686 35377 36178 60910 60910 0.14811053365338012 RHPSFFLY 8 Unmodified _RHPSFFLY_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.278564453125 2 533.777077 1065.5396 0.30038 0.00016034 0.76766 0.00040976 1.068 0.0005701 533.7774492717804 80.11 0.55993 80.11 79.775 80.335 0 56 28 2 0 0 0 0.80383 1 44379 44379 4.3292 0 1 1105500 52408 6957 35378 36179 60911 60911 0.009451973712884865 RHPSFHCHWRA 11 Unmodified _RHPSFHCHWRA_ 0 0 0 ENST00000508510.5_1_4:76649268-76649475:-|nuORF ENST00000508510.5_1_4:76649268-76649475:-|nuORF ENST00000508510.5_1_4:76649268-76649475:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.563232421875 3 478.56339 1432.66834 0.26044 0.00012464 -0.14751 -7.0593E-05 0.11293 5.4046E-05 478.5633183052724 88.653 0.1171 88.653 88.621 88.738 0 8 5 2 0 0 0 0.74244 1 49082 49082 0.073264 0 1 258370 52409 14560 35379 36180 60912 60912 -0.03068770937420595 RHPSPPPAP 9 Unmodified _RHPSPPPAP_ 0 0 0 REV__ENST00000537771.1_1_11:73105464-73105626:+|nuORF REV__ENST00000537771.1_1_11:73105464-73105626:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2589416503906 2 478.259051 954.503549 NaN NaN NaN NaN NaN NaN NaN 18.145 1 18.159 17.659 18.659 0.013865 0 0 0 0.84892 1 9076 9076 1.6526 0.17072 1 + 52410 28551 35380 36181 60913 60913 0.02447740194418202 RHPVRLFW 8 Unmodified _RHPVRLFW_ 0 0 0 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2;ENSG00000203877|ENST00000369689|RIPPLY2 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.821533203125 2 555.81961 1109.62467 NaN NaN NaN NaN NaN NaN NaN 14.467 1 14.436 13.936 14.936 -0.030868 0 0 0 0.97444 1 7042 7042 0.69038 0.088878 1 52411 10230 35381 36182 60914 60914 0.07423987627748829 RHQEMFHYF 9 Oxidation (M) _RHQEM(Oxidation (M))FHYF_ RHQEM(1)FHYF RHQEM(40)FHYF 0 0 1 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.8641052246094 3 437.529352 1309.56623 0.13604 5.9523E-05 -0.33781 -0.0001478 -0.20177 -8.8279E-05 437.5295768305159 31.551 0.2907 31.448 31.284 31.575 -0.10269 43 11 5 0 0 0 0.069655 1 16380 16380 40.239 33.609 1 93721000 52412 10310 35382 36183 60915 60915 1682 -0.07617481799707093 RHQEMFHYF 9 Oxidation (M) _RHQEM(Oxidation (M))FHYF_ RHQEM(1)FHYF RHQEM(51)FHYF 0 0 1 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5291748046875 3 437.529352 1309.56623 -0.021839 -9.5554E-06 -0.09356 -4.0935E-05 -0.1154 -5.0491E-05 437.52946675500755 31.699 0.25875 31.729 31.584 31.843 0.030106 37 11 4 0 0 0 0.037253 1 16583 16583 51.415 41.871 1 14719000 52413 10310 35382 36183 60916 60916 1682 -0.07617481799707093 RHQEMFHYF 9 Oxidation (M) _RHQEM(Oxidation (M))FHYF_ RHQEM(1)FHYF RHQEM(56)FHYF 0 0 1 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.52978515625 3 437.529352 1309.56623 1.1622 0.00050849 -0.2995 -0.00013104 0.86269 0.00037745 437.5293048065143 34.2 0.42709 30.215 29.984 30.411 -3.9853 75 23 4 0 0 0 0.029718 1 19730 19730 55.503 41.097 1 93389000 52414 10310 35382 36183 60917 60917 1682 -0.07617481799707093 RHQEMFHYF 9 Oxidation (M) _RHQEM(Oxidation (M))FHYF_ RHQEM(1)FHYF RHQEM(40)FHYF 0 0 1 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5296325683594 3 437.529352 1309.56623 0.94516 0.00041354 -0.6195 -0.00027105 0.32566 0.00014248 437.5291962699742 34.6 0.45103 30.505 30.301 30.752 -4.0951 85 26 4 0 0 0 0.069655 1 19926 19926 40.239 30.089 1 83281000 52415 10310 35382 36183 60918 60918 1682 -0.07617481799707093 RHQEMFHYF 9 Oxidation (M) _RHQEM(Oxidation (M))FHYF_ 0 0 1 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 437.529352 1309.56623 0.011885 5.2E-06 -1.0128 -0.00044313 -1.0009 -0.00043793 437.529213694245 31.423 0.26761 31.453 31.296 31.564 0.030104 0.045357 -0.00030178 NaN 40.239 33 11 4 NaN NaN NaN NaN 0 NaN NaN 0 15217000 52416 10310 35382 36183 1682 -0.07617481799707093 RHQEMFHYF 9 Unmodified _RHQEMFHYF_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.1972045898438 3 432.197713 1293.57131 0.31471 0.00013602 -0.32976 -0.00014252 -0.015052 -6.5055E-06 432.19772595791153 40.178 0.31742 39.881 39.69 40.008 -0.29716 39 14 4 0 0 0 0.044296 1 21193 21193 47.594 43.718 1 7244800 52417 10310 35382 36184 60919 60919 -0.06373177937098262 RHQEMFHYF 9 Unmodified _RHQEMFHYF_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.1976013183594 3 432.197713 1293.57131 0.46826 0.00020238 0.038715 1.6733E-05 0.50698 0.00021911 432.19781101287003 39.76 0.28764 39.765 39.627 39.915 0.0050583 36 13 3 0 0 0 0.037253 1 21172 21172 51.415 45.223 1 5771700 52418 10310 35382 36184 60920 60920 -0.06373177937098262 RHQEMFHYF 9 Unmodified _RHQEMFHYF_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.1990966796875 3 432.197713 1293.57131 0.69012 0.00029827 0.43841 0.00018948 1.1285 0.00048775 432.19796748094984 43.916 0.40065 39.151 38.935 39.336 -4.7648 76 25 4 0 0 0 0.012668 2 26639 26639;26772 72.968 66.338 1 50592000 52419 10310 35382 36184 60921;60922 60921 -0.06373177937098262 RHQEMFHYF 9 Unmodified _RHQEMFHYF_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.1983642578125 3 432.197713 1293.57131 0.23465 0.00010141 -0.20364 -8.8011E-05 0.03101 1.3402E-05 432.1976534512305 84.822 0.64131 78.646 78.35 78.992 -6.1757 124 37 4 0 0 0 0.029718 2 55736 55736;55864 55.503 50.1 1 136540000 52420 10310 35382 36184 60923;60924 60923 -0.06373177937098262 RHQPYTTQVY 10 Unmodified _RHQPYTTQVY_ 0 0 0 ENSG00000142549|ENST00000270642|IGLON5 ENSG00000142549|ENST00000270642|IGLON5 ENSG00000142549|ENST00000270642|IGLON5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.5506286621094 3 431.550921 1291.63093 NaN NaN NaN NaN NaN NaN NaN 27.835 1 27.788 27.288 28.288 -0.046408 0 0 0 0.95103 1 14355 14355 3.0723 0 1 52421 5427 35383 36185 60925 60925 -0.003215837220523099 RHQQEMWGFRK 11 Unmodified _RHQQEMWGFRK_ 0 0 0 nc|ENSG00000175701|Q8NCU8-1|MTLN nc|ENSG00000175701|Q8NCU8-1|MTLN nc|ENSG00000175701|Q8NCU8-1|MTLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.5855407714844 3 501.585971 1501.73608 0.077594 3.892E-05 -0.57982 -0.00029083 -0.50222 -0.00025191 501.5857174735107 18.901 0.14722 18.907 18.802 18.949 0.0060463 23 7 4 0 0 0 0.7326 1 9572 9572 1.2148 1.12 1 2814800 52422 16396 35384 36186 60926 60926 0.005286342026920465 RHREVFSLY 9 Unmodified _RHREVFSLY_ 0 0 0 REV__nc|ENSG00000078725|O60477-2|BRINP1 REV__nc|ENSG00000078725|O60477-2|BRINP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.8232421875 2 603.822547 1205.63054 0.49423 0.00029843 -1.0998 -0.00066408 -0.60556 -0.00036565 603.8217821067916 84.409 0.40659 83.909 83.729 84.136 -0.49961 51 18 4 0 0 0 0.4887 1 46153 46153 12.532 1.0368 1 6259700 + 52423 17634 35385 36187 60927 60927 0.035950413487626065 RHREVFSLY 9 Unmodified _RHREVFSLY_ 0 0 0 REV__nc|ENSG00000078725|O60477-2|BRINP1 REV__nc|ENSG00000078725|O60477-2|BRINP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.822509765625 2 603.822547 1205.63054 0.093047 5.6184E-05 -1.4521 -0.00087679 -1.359 -0.0008206 603.8212498549866 93.591 0.83276 87.416 87.1 87.932 -6.1757 126 52 3 0 0 0 0.34134 1 62028 62028 15.847 0 1 43424000 + 52424 17634 35385 36187 60928 60928 0.035950413487626065 RHREWLLEH 9 Unmodified _RHREWLLEH_ 0 0 0 REV__ENSG00000165724|ENST00000298585|ZMYND19 REV__ENSG00000165724|ENST00000298585|ZMYND19 MSMS AL20221201_MKP_PDAC_01 4 425.8963623046875 3 425.895022 1274.66324 NaN NaN NaN NaN NaN NaN NaN 19.27 1 16.613 16.113 17.113 -2.6564 0 0 0 0.82739 1 10193 10193 2.4985 0.90621 1 + 52425 22044 35386 36188 60929 60929 0.036892484716190665 RHRFKNPRLRR 11 Unmodified _RHRFKNPRLRR_ 0 0 0 REV__ENSG00000101825|ENST00000217939|MXRA5 REV__ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.7378234863281 4 384.736817 1534.91816 0.10403 4.0023E-05 2.0839 0.00080174 2.1879 0.00084177 384.98851471635504 42.281 0.25793 42.272 42.123 42.381 -0.0088196 14 11 2 0 0 0 0.306 1 22682 22682 0.45452 0.35968 1 9191500 + 52426 18194 35387 36189 60930 60930 0.17210154730469185 RHRLWIMGII 10 Unmodified _RHRLWIMGII_ 0 0 0 REV__ENSG00000103257|ENST00000261622|SLC7A5 REV__ENSG00000103257|ENST00000261622|SLC7A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2564392089844 3 432.257015 1293.74922 NaN NaN NaN NaN NaN NaN NaN 88.296 1 87.792 87.292 88.292 -0.50423 0 0 0 0.98692 1 48292 48292 2.086 0.63089 1 + 52427 18296 35388 36190 60931 60931 0.11409117052767215 RHRPWCSECSS 11 Unmodified _RHRPWCSECSS_ 0 0 0 REV__ENSG00000196569|ENST00000421865|LAMA2 REV__ENSG00000196569|ENST00000421865|LAMA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.8595275878906 3 449.860884 1346.56082 NaN NaN NaN NaN NaN NaN NaN 17.386 1 17.4 16.9 17.9 0.013865 0 0 0 0.94338 1 8641 8641 0.08335 0.08335 1 + 52428 23847 35389 36191 60932 60932 -0.0985952865382842 RHRQKDQGF 9 Unmodified _RHRQKDQGF_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2077941894531 3 391.207489 1170.60064 -0.19259 -7.5343E-05 0.68648 0.00026855 0.49389 0.00019321 391.2074382251632 54.094 0.279 54.027 53.863 54.142 -0.06694 26 13 3 0 0 0 0.58466 1 29366 29366 1.1933 0 1 1351100 52429 8645 35390 36192 60933 60933 0.02216102403417608 RHRRLHRY 8 Unmodified _RHRRLHRY_ 0 0 0 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.34521484375 2 597.347389 1192.68023 -0.74103 -0.00044266 -2.6223 -0.0015664 -3.3633 -0.0020091 597.3459128674817 101.99 0.12014 101.95 101.9 102.02 -0.045853 7 3 3 0 0 0 0.80975 1 56680 56680 0.79363 0.10326 1 5199100 52430 5245 35391 36193 60934 60934 0.09159213868088045 RHRRRRHH 8 Unmodified _RHRRRRHH_ 0 0 0 REV__ENSG00000166546|ENST00000536005|BEAN1 REV__ENSG00000166546|ENST00000536005|BEAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8530883789062 2 605.853704 1209.69286 NaN NaN NaN NaN NaN NaN NaN 103.78 1 103.73 103.23 104.23 -0.048737 0 0 0 0.97444 1 57628 57628 0.69038 0.28966 1 + 52431 22132 35392 36194 60935 60935 0.09639670050978566 RHRRTHHGEN 10 Unmodified _RHRRTHHGEN_ 0 0 0 ENSG00000185730|ENST00000330143|ZNF696 ENSG00000185730|ENST00000330143|ZNF696 ENSG00000185730|ENST00000330143|ZNF696 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5157165527344 3 433.889042 1298.6453 NaN NaN NaN NaN NaN NaN NaN 14.75 1 14.719 14.219 15.219 -0.030868 0 0 0 1.0061 1 7196 7196 0 0 1 52432 9405 35393 36195 60936 60936 0.007919262694713325 RHSHTTHPIF 10 Unmodified _RHSHTTHPIF_ 0 0 0 REV__ENST00000526104.5_2_11:214922-215090:+|nuORF REV__ENST00000526104.5_2_11:214922-215090:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5484619140625 3 411.547623 1231.62104 0.64083 0.00026373 1.8784 0.00077306 2.5193 0.0010368 411.5482184012392 62.577 0.26966 62.09 61.956 62.226 -0.48764 20 12 3 0 0 0 0.69377 1 34121 34121 1.7423 0.52744 1 2492600 + 52433 28362 35394 36196 60937 60937 0.01449273063212786 RHSLEVMNSMV 11 Unmodified _RHSLEVMNSMV_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826904296875 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 54.597 1 54.597 54.097 55.097 0 0 0 0 0.94216 1 30313 30313 0.32927 0 1 52434 6164 35395 36197 60938 60938 -0.0167201667441077 RHSMDPPTF 9 Unmodified _RHSMDPPTF_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2521362304688 2 544.253108 1086.49166 0.17373 9.4554E-05 -0.89093 -0.00048489 -0.7172 -0.00039034 544.2523002583489 70.865 0.34077 70.387 70.248 70.589 -0.47735 25 15 2 0 0 0 0.49272 1 38778 38778 7.9102 0 1 1591300 52435 10663 35396 36198 60939 60939 -0.04812244611071037 RHSVGKIG 8 Unmodified _RHSVGKIG_ 0 0 0 REV__ENST00000565109.5_1_16:75652525-75654697:-|nuORF REV__ENST00000565109.5_1_16:75652525-75654697:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2534790039062 2 427.253769 852.492984 0.10555 4.5098E-05 0.088817 3.7947E-05 0.19437 8.3045E-05 427.25383609652016 16.728 0.18267 16.733 16.648 16.83 0.0050564 15 11 2 0 0 0 0.80799 1 8393 8393 1.8442 0 1 799180 + 52436 28905 35397 36199 60940 60940 0.06083757540000079 RHSWRPAAASL 11 Unmodified _RHSWRPAAASL_ 0 0 0 REV__ENST00000522915.5_1_8:27610094-27630105:-|nuORF REV__ENST00000522915.5_1_8:27610094-27630105:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.8957824707031 3 417.895022 1250.66324 NaN NaN NaN NaN NaN NaN NaN 23.391 1 20.613 20.113 21.113 -2.7784 0 0 0 0.89305 1 12660 12660 3.8459 1.5932 1 + 52437 28307 35398 36200 60941 60941 0.04793248471605693 RHSYPVTL 8 Unmodified _RHSYPVTL_ 0 0 0 REV__ENST00000264350.7_1_4:89384727-89385075:+|nuORF REV__ENST00000264350.7_1_4:89384727-89385075:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7693176269531 2 486.766709 971.518865 0.59913 0.00029164 2.3288 0.0011336 2.9279 0.0014252 486.76763259977076 46.065 0.50728 41.11 40.908 41.415 -4.9549 68 33 3 0 0 0 0.26159 2 28342 28342;28499 60.39 9.7891 1 27217000 + 52438 25069 35399 36201 60942;60943 60942 0.03196606991616591 RHTGALPLF 9 Unmodified _RHTGALPLF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2902221679688 2 506.290351 1010.56615 0.064348 3.2579E-05 -0.25625 -0.00012974 -0.1919 -9.7157E-05 506.2904293698391 51.577 0.37001 51.524 51.325 51.695 -0.053871 56 18 4 0 0 0 0.25681 1 27930 27930 19.257 1.122 1 25285000 52439 2360 35400 36202 60944 60944 0.061288862626156515 RHTGALPLF 9 Unmodified _RHTGALPLF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2913513183594 2 506.290351 1010.56615 0.13009 6.5865E-05 0.38302 0.00019392 0.51312 0.00025979 506.29058522441494 56.107 0.391 50.13 49.913 50.304 -5.9769 38 22 2 0 0 0 0.047788 1 35804 35804 45.7 3.86 1 49422000 52440 2360 35400 36202 60945 60945 0.061288862626156515 RHVLFLALI 9 Unmodified _RHVLFLALI_ 0 0 0 REV__ENSG00000167601|ENST00000301178|AXL REV__ENSG00000167601|ENST00000301178|AXL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2331237792969 3 361.234205 1080.68079 NaN NaN NaN NaN NaN NaN NaN 88.952 1 88.448 87.948 88.948 -0.50423 0 0 0 0.85737 1 48641 48641 0.26902 0 1 + 52441 22224 35401 36203 60946 60946 0.1436719574453491 RHVLWRFLREY 11 Unmodified _RHVLWRFLREY_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.6296997070312 3 525.628276 1573.863 NaN NaN NaN NaN NaN NaN NaN 75.581 1 75.104 74.604 75.604 -0.47714 0 0 0 0.94337 1 41375 41375 0.094841 0.094841 1 + 52442 19898 35402 36204 60947 60947 0.09902303419380587 RHVVSPLTFQ 10 Unmodified _RHVVSPLTFQ_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2249450683594 3 395.224257 1182.65094 NaN NaN NaN NaN NaN NaN NaN 15.852 1 15.852 15.352 16.352 0 0 0 0 0.99388 1 7674 7674 0.56317 0.32733 1 + 52443 17379 35403 36205 60948 60948 0.06692212008556453 RHWQEITF 8 Unmodified _RHWQEITF_ 0 0 0 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 ENSG00000088035|ENST00000263440|ALG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7839965820312 2 558.78289 1115.55123 0.631 0.00035259 1.0206 0.00057028 1.6516 0.00092288 558.7833349252959 90.871 0.91029 90.377 90.074 90.984 -0.49458 190 52 6 0 0 0 0.74163 2 49555 49555;49656 13.508 13.508 1 308160000 52444 1477 35404 36206 60949;60950 60949 -0.001926056054116998 RHWSWWCRRSP 11 Unmodified _RHWSWWCRRSP_ 0 0 0 ENST00000380486.3_2_21:43339056-43362335:-|nuORF ENST00000380486.3_2_21:43339056-43362335:-|nuORF ENST00000380486.3_2_21:43339056-43362335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.5872802734375 3 519.586194 1555.73675 0.21933 0.00011396 0.99969 0.00051943 1.219 0.00063338 519.586685036792 26.121 0.29699 26.147 26.004 26.301 0.026951 36 13 4 0 0 0 0.72131 1 13524 13524 2.2527 1.143 1 62147000 52445 12598 35405 36207 60951 60951 -0.018885263575839417 RHYPLWVKVE 10 Unmodified _RHYPLWVKVE_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.9151611328125 3 442.915423 1325.72444 0.44541 0.00019728 -0.33186 -0.00014699 0.11355 5.0293E-05 442.91513844679156 68.238 0.33165 68.238 68.06 68.391 0 39 15 3 0 0 0 0.713 1 38004 38004 1.4551 0.24029 1 2515600 52446 8400 35406 36208 60952 60952 0.0746076045099926 RHYRRGDRE 9 Unmodified _RHYRRGDRE_ 0 0 0 REV__ENST00000374280.3_1_1:26348274-26348409:+|nuORF REV__ENST00000374280.3_1_1:26348274-26348409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8181762695312 2 622.821401 1243.62825 0.4725 0.00029428 -2.9992 -0.0018679 -2.5267 -0.0015737 622.8190623128264 83.901 0.26178 83.401 83.266 83.528 -0.49961 17 10 2 0 0 0 0.42049 1 45929 45929 11.495 0.59575 1 674690 + 52447 26175 35407 36209 60953 60953 0.01618005663635813 RHYRRRCSRCC 11 Unmodified _RHYRRRCSRCC_ 0 0 0 REV__ENST00000368455.8_1_6:122720752-122720851:+|nuORF REV__ENST00000368455.8_1_6:122720752-122720851:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.9328002929688 4 374.681762 1494.69794 0.69609 0.00026081 -0.0017948 -6.7247E-07 0.6943 0.00026014 374.9328652275856 15.154 0.092768 12.627 12.584 12.677 -2.5273 19 12 2 0 0 0 0.74046 1 7762 7762 0.45452 0 1 1805900 + 52448 26010 35408 36210 60954 60954 -0.029618982552165107 RIAAWVRDYF 10 Unmodified _RIAAWVRDYF_ 0 0 0 REV__ENST00000585325.5_1_19:11557144-11558756:+|nuORF REV__ENST00000585325.5_1_19:11557144-11558756:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.2349548339844 3 432.899773 1295.67749 0.47146 0.00020409 0.83023 0.00035941 1.3017 0.0005635 433.23418145069803 39.72 0.20435 39.725 39.607 39.811 0.0050545 23 9 3 0 0 0 0.66569 1 21163 21163 6.1918 0 1 1980100 + 52449 19701 35409 36211 60955 60955 0.041479008998976497 RIAVIGGGV 9 Unmodified _RIAVIGGGV_ 0 0 0 ENST00000478432.1_1_1:146687269-146696621:-|nuORF;nc|ENSG00000131781|P49326-2|FMO5;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5 ENST00000478432.1_1_1:146687269-146696621:-|nuORF ENST00000478432.1_1_1:146687269-146696621:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.5265502929688 1 841.525413 840.518136 1.5164 0.0012761 1.157 0.00097366 2.6735 0.0022498 841.5262165235002 105.87 0.31022 99.69 99.535 99.845 -6.1757 63 36 2 0 0 0 0.62242 1 70835 70835 0 0 1 3031200 52450 4350 35410 36212 60956 60956 0.09149812342582209 RICKVPLT 8 Unmodified _RICKVPLT_ 0 0 0 ENST00000374023.7_2_6:34556733-34556940:-|nuORF ENST00000374023.7_2_6:34556733-34556940:-|nuORF ENST00000374023.7_2_6:34556733-34556940:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 465.2837524414062 2 465.28368 928.552807 NaN NaN NaN NaN NaN NaN NaN 103.68 1 97.507 97.007 98.007 -6.1757 0 0 0 0.97444 1 69499 69499 5.2307 0 1 52451 12432 35411 36213 60957 60957 0.08567312159004814 RICPRVRNG 9 Unmodified _RICPRVRNG_ 0 0 0 REV__AluJb_dup87692|chr12:125798275-125798456:-|1.702961103152003|0.000958979254526|10.79|160.0|10|3|sense REV__AluJb_dup87692|chr12:125798275-125798456:-|1.702961103152003|0.000958979254526|10.79|160.0|10|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5385131835938 3 357.538182 1069.59272 -0.27062 -9.6757E-05 0.13777 4.9258E-05 -0.13285 -4.7499E-05 357.53814635398123 41.887 0.6469 41.878 41.395 42.042 -0.0088196 44 30 2 0 0 0 0.55144 1 22219 22219 2.4985 0 1 15109000 + 52452 16709 35412 36214 60958 60958 0.06070251882283628 RICWAVMVGP 10 Unmodified _RICWAVMVGP_ 0 0 0 ENST00000277141.10_2_9:88923435-88923504:-|nuORF ENST00000277141.10_2_9:88923435-88923504:-|nuORF ENST00000277141.10_2_9:88923435-88923504:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2982177734375 2 566.293722 1130.57289 3.6596 0.0020724 2.7229 0.001542 6.3825 0.0036144 566.2957710612211 97.959 0.36359 97.941 97.651 98.015 -0.018188 27 12 3 0 0 0 0.57332 1 54426 54426 12.532 0.89125 1 4199000 52453 11395 35413 36215 60959 60959 0.012827398272975188 RIDGFSSPDQY 11 Unmodified _RIDGFSSPDQY_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.7974243164062 2 642.796392 1283.57823 -0.69648 -0.00044769 1.5958 0.0010258 0.89934 0.00057809 642.7974847648871 26.931 0.27283 26.931 26.719 26.992 0 21 12 3 0 0 0 0.66968 1 13859 13859 7.1017 0.47135 1 1392200 52454 8170 35414 36216 60960 60960 -0.05221586575521542 RIEFYYCSEI 10 Unmodified _RIEFYYCSEI_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|256|2|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|256|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.8085327148438 2 661.807913 1321.60127 4.6209 0.0030581 -1.7259 -0.0011422 2.895 0.0019159 661.8079290133411 99.136 0.457 99.108 99.003 99.46 -0.028282 31 16 4 0 0 0 0.65773 1 55062 55062 7.609 0.88579 1 4240500 + 52455 29429 35415 36217 60961 60961 -0.0466628378239875 RIEMVRREAC 10 Unmodified _RIEMVRREAC_ 0 0 0 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5534973144531 3 421.553391 1261.63834 0.37587 0.00015845 -1.1707 -0.00049349 -0.79478 -0.00033504 421.55290140364485 71.978 0.27728 72.017 71.871 72.149 0.039024 39 13 4 0 0 0 0.56348 1 39613 39613 11.518 7.1117 1 9189400 52456 10073 35416 36218 60962 60962 0.017991092823876897 RIEQIDPVLL 10 Unmodified _RIEQIDPVLL_ 0 0 0 REV__nc|ENSG00000130294|Q12756|KIF1A REV__nc|ENSG00000130294|Q12756|KIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2400817871094 3 399.239684 1194.69722 1.6733 0.00066804 -1.1623 -0.00046404 0.51097 0.000204 399.23913553181796 105.04 0.12885 98.861 98.789 98.918 -6.1757 25 12 3 0 0 0 0.72292 1 70316 70316 0.12286 0 1 52082000 + 52457 19712 35417 36219 60963 60963 0.10766232119999586 RIERTREGDS 10 Unmodified _RIERTREGDS_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8791809082031 3 406.877697 1217.61126 NaN NaN NaN NaN NaN NaN NaN 7.7382 1 7.6467 7.1467 8.1467 -0.09156 0 0 0 1.0024 1 3801 3801 0.13989 0.056541 1 52458 10115 35418 36220 60964 60964 0.011160402671976044 RIERTREGDS 10 Unmodified _RIERTREGDS_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.87939453125 3 406.877697 1217.61126 NaN NaN NaN NaN NaN NaN NaN 8.2346 1 8.1431 7.6431 8.6431 -0.09156 0 0 0 1.0024 1 4045 4045 0.13989 0.056541 1 52459 10115 35418 36220 60965 60965 0.011160402671976044 RIERTREGDS 10 Unmodified _RIERTREGDS_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.87890625 3 406.877697 1217.61126 NaN NaN NaN NaN NaN NaN NaN 7.2342 1 7.2495 6.7495 7.7495 0.015238 0 0 0 1.0024 1 3609 3609 0.13989 0.017027 1 52460 10115 35418 36220 60966 60966 0.011160402671976044 RIERTREGDS 10 Unmodified _RIERTREGDS_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8797302246094 3 406.877697 1217.61126 NaN NaN NaN NaN NaN NaN NaN 8.4061 1 8.4237 7.9237 8.9237 0.017581 0 0 0 1.0024 1 4186 4186 0.13989 0.056541 1 52461 10115 35418 36220 60967 60967 0.011160402671976044 RIERTREGDS 10 Unmodified _RIERTREGDS_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2 ENSG00000198626|ENST00000366574|RYR2 ENSG00000198626|ENST00000366574|RYR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8003845214844 3 406.877697 1217.61126 NaN NaN NaN NaN NaN NaN NaN 8.9107 1 8.9282 8.4282 9.4282 0.017581 0 0 0 1.0024 1 4429 4429 0.13989 0.056541 1 52462 10115 35418 36220 60968 60968 0.011160402671976044 RIFAHKIYL 9 Unmodified _RIFAHKIYL_ 0 0 0 ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 ENSG00000008853|ENST00000251822|RHOBTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5693359375 3 387.569476 1159.6866 -0.29497 -0.00011432 1.6347 0.00063355 1.3397 0.00051923 387.56975435379 36.943 0.14384 36.964 36.904 37.048 0.021545 10 6 2 0 0 0 0.37578 1 19615 19615 13.615 10.772 1 1308700 52463 397 35419 36221 60969 60969 0.11314294256226276 RIFPMIFK 8 Unmodified _RIFPMIFK_ 0 0 0 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15 MSMS AL20221201_MKP_PDAC_01 4 351.2096252441406 3 351.208891 1050.60484 NaN NaN NaN NaN NaN NaN NaN 15.949 1 13.392 12.892 13.892 -2.557 0 0 0 0.95254 1 8228 8228 10.074 0.6908 1 52464 16265 35420 36222 60970 60970 0.08156475572764066 RIHEDFKM 8 Unmodified _RIHEDFKM_ 0 0 0 ENST00000373603.5_1_9:127114663-127114750:+|nuORF ENST00000373603.5_1_9:127114663-127114750:+|nuORF ENST00000373603.5_1_9:127114663-127114750:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1846618652344 3 359.183293 1074.52805 1.4928 0.00053618 0.60595 0.00021765 2.0987 0.00075383 359.1834104814487 22.131 0.32256 19.397 19.219 19.542 -2.7348 30 17 2 0 0 0 0.80232 1 11889 11889 3.5965 1.098 1 3120400 52465 12417 35421 36223 60971 60971 -0.0062336771438822325 RIHEMIEKN 9 Unmodified _RIHEMIEKN_ 0 0 0 REV__nc|ENSG00000131368|P82663-2|MRPS25 REV__nc|ENSG00000131368|P82663-2|MRPS25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5422668457031 3 390.541369 1168.60228 1.1831 0.00046206 1.1856 0.00046301 2.3687 0.00092507 390.54168913143207 90.079 0.53621 83.903 83.739 84.275 -6.1757 62 30 3 0 0 0 0.1773 1 59455 59455 18.373 0 1 14433000 + 52466 19784 35422 36224 60972 60972 0.02471975377147828 RIHIGERRF 9 Unmodified _RIHIGERRF_ 0 0 0 ENST00000398665.7_1_19:2194545-2202713:+|nuORF ENST00000398665.7_1_19:2194545-2202713:+|nuORF ENST00000398665.7_1_19:2194545-2202713:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.2325439453125 3 395.231746 1182.67341 NaN NaN NaN NaN NaN NaN NaN 46.541 1 41.46 40.96 41.96 -5.0805 0 0 0 0.75456 1 28776 28776 7.609 2.893 1 52467 12854 35423 36225 60973 60973 0.08937856196826033 RIHIGKKP 8 Unmodified _RIHIGKKP_ 0 0 0 nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A;ENST00000395894.6_1_17:15619323-15620601:+|nuORF;nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000187607|Q9HBT8-2|ZNF286A;nc|ENSG00000290687|P0CG31|ZNF286B nc|ENSG00000187607|Q9HBT8-2|ZNF286A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.8088684082031 2 474.808711 947.602869 -0.28762 -0.00013657 0.47937 0.00022761 0.19175 9.1044E-05 474.8089223639959 51.425 0.21318 51.371 51.226 51.44 -0.053871 12 10 2 0 0 0 0.80992 1 27855 27855 0.69038 0 1 1144500 52468 9570;16637 35424 36226 60974 60974 0.12697182879173852 RIHVPWTKL 9 Unmodified _RIHVPWTKL_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;nc|ENSG00000132549|Q7Z7G8-5|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9013061523438 3 383.901226 1148.68185 0.35023 0.00013446 0.84044 0.00032265 1.1907 0.0004571 383.9014395396654 45.929 0.25989 45.901 45.804 46.064 -0.028011 27 11 3 0 0 0 0.10247 1 24709 24709 24.882 16.726 1 2418700 52469 16193 35425 36227 60975 60975 0.11345410113449361 RIIDSLFNTV 10 Unmodified _RIIDSLFNTV_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.332275390625 2 589.332413 1176.65027 1.0337 0.00060922 -0.90081 -0.00053088 0.13294 7.8345E-05 589.331780235628 70.703 0.19806 70.738 70.612 70.81 0.035515 15 8 2 0 0 0 0.65164 1 38936 38936 12.873 6.6668 1 2143000 52470 2677 35426 36228 60976 60976 0.0690137256883645 RIIDTVAQV 9 Unmodified _RIIDTVAQV_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.8012390136719 2 507.800749 1013.58694 1.0744 0.00054559 -0.93381 -0.00047419 0.14061 7.14E-05 507.8003297605315 42.819 0.24755 42.819 42.718 42.966 0 25 12 3 0 0 0 0.11784 1 23267 23267 31.268 3.6395 1 6289700 52471 2059 35427 36229 60977 60977 0.08069431851617992 RIIDTVAQV 9 Unmodified _RIIDTVAQV_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8002014160156 2 507.800749 1013.58694 0.99423 0.00050487 -1.7297 -0.00087834 -0.73547 -0.00037347 507.79991272692047 49.71 0.33089 44.171 43.985 44.316 -5.5391 26 20 2 0 0 0 0.18144 1 31075 31075 24.991 2.2547 1 21045000 52472 2059 35427 36229 60978 60978 0.08069431851617992 RIIDVVYNA 9 Unmodified _RIIDVVYNA_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.80078125 2 531.800749 1061.58694 0.44633 0.00023736 0.040282 2.1422E-05 0.48661 0.00025878 531.8005370859628 49.207 0.33032 48.836 48.693 49.024 -0.37172 31 15 3 0 0 0 0.062454 1 26420 26420 41.956 25.013 1 6499600 52473 5452 35428 36230 60979 60979 0.058614318515992636 RIINERHLF 9 Unmodified _RIINERHLF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2347106933594 3 399.899885 1196.67783 -0.41034 -0.00016409 1.4597 0.00058372 1.0493 0.00041962 399.9000978486073 31.665 0.32133 31.695 31.478 31.8 0.030104 41 14 4 0 0 0 0.05483 1 16561 16561 34.222 14.86 1 4852300 52474 7043 35429 36231 60980 60980 0.08735320619734921 RIKTMLKKFVR 11 Unmodified _RIKTMLKKFVR_ 0 0 0 REV__ENST00000462130.1_1_2:242208797-242208971:-|nuORF REV__ENST00000462130.1_1_2:242208797-242208971:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 473.9705505371094 3 473.970875 1418.89079 NaN NaN NaN NaN NaN NaN NaN 3.2349 1 0.75294 0.25294 1.2529 -2.482 0 0 0 0.9435 1 1648 1648 0 0 1 + 52475 27330 35430 36232 60981 60981 0.19810490355189359 RIKTMLKKFVR 11 Unmodified _RIKTMLKKFVR_ 0 0 0 REV__ENST00000462130.1_1_2:242208797-242208971:-|nuORF REV__ENST00000462130.1_1_2:242208797-242208971:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 473.9705505371094 3 473.970875 1418.89079 NaN NaN NaN NaN NaN NaN NaN 12.321 1 9.8393 9.3393 10.339 -2.482 0 0 0 0.9435 1 6227 6227 0 0 1 + 52476 27330 35430 36232 60982 60982 0.19810490355189359 RILGAVAKV 9 Unmodified _RILGAVAKV_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.8108520507812 2 463.810919 925.607286 1.1912 0.0005525 -0.33477 -0.00015527 0.85645 0.00039723 463.81069979564234 37.117 0.37331 32.833 32.65 33.023 -4.2835 36 22 2 0 0 0 0.042911 1 21706 21706 48.346 7.8973 1 12245000 52477 613 35431 36233 60983 60983 0.14150647302085417 RILHTYYKF 9 Unmodified _RILHTYYKF_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2323303222656 3 414.232752 1239.67643 -0.055556 -2.3013E-05 0.62516 0.00025896 0.56961 0.00023595 414.23293530180433 33.724 0.25482 33.753 33.604 33.859 0.028934 27 10 3 0 0 0 0.044296 1 17727 17727 59.052 47.558 1 6111800 52478 9221 35432 36234 60984 60984 0.06617686530967148 RILIAIALIK 10 Unmodified _RILIAIALIK_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000588465.5_1_19:10713206-10745972:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2677917480469 3 375.269027 1122.78525 NaN NaN NaN NaN NaN NaN NaN 101.08 1 101.04 100.54 101.54 -0.04216 0 0 0 1.0061 1 56155 56155 0 0 1 52479 4132 35433 36235 60985 60985 0.2287689750123718 RILKVLLWLLA 11 Unmodified _RILKVLLWLLA_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117;ENST00000546387.1_1_12:44238454-44238748:+|nuORF ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS AL20221201_MKP_PDAC_01 4 669.4581298828125 2 669.455208 1336.89586 NaN NaN NaN NaN NaN NaN NaN 104.13 1 97.954 97.454 98.454 -6.1757 0 0 0 0.94301 1 69756 69756 0.35063 0 1 52480 5131 35434 36236 60986 60986 0.24089117489506862 RILLKKLAVKV 11 Unmodified _RILLKKLAVKV_ 0 0 0 REV__ENSG00000186881|ENST00000334726|OR13F1 REV__ENSG00000186881|ENST00000334726|OR13F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.959716796875 2 640.960658 1279.90676 NaN NaN NaN NaN NaN NaN NaN 16.862 1 16.867 16.367 17.367 0.0050564 0 0 0 0.9435 1 8475 8475 0 0 1 + 52481 23607 35435 36237 60987 60987 0.2780051986376293 RILLVLKPI 9 Unmodified _RILLVLKPI_ 0 0 0 ENST00000221200.8_1_8:25290848-25290881:-|nuORF ENST00000221200.8_1_8:25290848-25290881:-|nuORF ENST00000221200.8_1_8:25290848-25290881:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1064.585205078125 1 1064.75541 1063.74814 -0.38473 -0.00040964 -0.96443 -0.0010269 -1.3492 -0.0014365 1065.7555308772926 34.074 0.15246 33.882 33.82 33.972 -0.19132 7 5 2 0 0 0 0.2191 1 17804 17804 0 0 1 885850 52482 11032 35436 36238 60988 60988 0.21881225955485206 RILLWRFCFYL 11 Unmodified _RILLWRFCFYL_ 0 0 0 REV__ENSG00000121749|ENST00000485960|TBC1D15 REV__ENSG00000121749|ENST00000485960|TBC1D15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 765.4261474609375 2 765.426125 1528.8377 NaN NaN NaN NaN NaN NaN NaN 97.342 1 97.342 96.842 97.842 0 0 0 0 0.9435 1 53786 53786 0 0 1 + 52483 19306 35437 36239 60989 60989 0.09443112572580503 RILNEVTYDN 10 Unmodified _RILNEVTYDN_ 0 0 0 REV__LILRA6|p.K441N|1|0.08|ENSG00000244482|chr19:54239076-54239076|C/A|missense_variant REV__LILRA6|p.K441N|1|0.08|ENSG00000244482|chr19:54239076-54239076|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.87841796875 3 412.878815 1235.61462 NaN NaN NaN NaN NaN NaN NaN 19.17 1 19.17 18.67 19.67 0 0 0 0 0.98692 1 9572 9572 2.086 0 1 + 52484 29451 35438 36240 60990 60990 0.006232903212094243 RILSKLHTV 9 Unmodified _RILSKLHTV_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2296752929688 3 356.229231 1065.66586 1.1361 0.0004047 0.21275 7.5787E-05 1.3488 0.00048049 356.22932782051674 28.018 0.25162 24.87 24.751 25.003 -3.1482 22 13 2 0 0 0 0.043414 1 15566 15566 48.073 18.636 1 13154000 52485 6649 35439 36241 60991 60991 0.13565703876543012 RILSRLEAV 9 Unmodified _RILSRLEAV_ 0 0 0 nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.829833984375 2 528.82984 1055.64513 -0.25348 -0.00013405 0.80777 0.00042717 0.55429 0.00029312 528.8302472817605 36.885 0.23765 36.907 36.767 37.005 0.021545 18 10 2 0 0 0 0.46501 1 19548 19548 9.3831 2.66 1 2319100 52486 10144 35440 36242 60992 60992 0.11953113496883816 RILSRLEAV 9 Unmodified _RILSRLEAV_ 0 0 0 nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5465393066406 3 352.888986 1055.64513 -0.35662 -0.00012585 1.6456 0.00058071 1.289 0.00045487 352.8898646421896 36.861 0.16837 36.882 36.816 36.984 0.021545 13 7 2 0 0 0 0.20572 1 19560 19560 10.151 2.5416 1 985120 52487 10144 35440 36242 60993 60993 0.11953113496883816 RILVRLPALRL 11 Unmodified _RILVRLPALRL_ 0 0 0 ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000475707.5_1_3:15080546-15084512:+|nuORF ENSG00000177463|ENST00000425241|NR2C2 ENSG00000177463|ENST00000425241|NR2C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.4552001953125 2 660.453531 1318.89251 1.2745 0.00084177 -1.7149 -0.0011326 -0.44037 -0.00029084 660.4522767859651 105.57 0.30456 99.392 99.313 99.618 -6.1757 33 24 2 0 0 0 0.7453 1 70856 70856 0 0 1 9358200 52488 8685 35441 36243 60994 60994 0.24581867435472304 RIMEFTTTL 9 Oxidation (M) _RIM(Oxidation (M))EFTTTL_ RIM(1)EFTTTL RIM(52)EFTTTL 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2921752929688 2 564.291899 1126.56925 0.60982 0.00034412 -0.65605 -0.0003702 -0.046228 -2.6086E-05 564.2922896324801 49.104 0.30592 48.733 48.597 48.903 -0.37171 32 14 3 0 0 0 0.036857 1 26374 26374 51.63 17.228 1 5350800 52489 10766 35442 36244 60995 60995 1724 0.011023485344367145 RIMNLTVML 9 2 Oxidation (M) _RIM(Oxidation (M))NLTVM(Oxidation (M))L_ RIM(1)NLTVM(1)L RIM(59)NLTVM(59)L 0 0 2 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8050537109375 2 561.804119 1121.59369 0.79703 0.00044778 0.13579 7.6288E-05 0.93282 0.00052406 561.8045947988552 54.839 0.43679 54.772 54.504 54.94 -0.066936 63 21 4 0 0 0 0.024882 1 29759 29759 58.679 16.839 1 8863600 52490 3520 35443 36245 60996 60996 622;623 0.03775285416327279 RINTQRRLP 9 Unmodified _RINTQRRLP_ 0 0 0 REV__ENSG00000080511|ENST00000591589|RDH8 REV__ENSG00000080511|ENST00000591589|RDH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2352600097656 3 385.235267 1152.68397 NaN NaN NaN NaN NaN NaN NaN 37.065 1 37.087 36.587 37.587 0.021545 0 0 0 0.85447 1 19662 19662 0.96228 0.18574 1 + 52491 17666 35444 36246 60997 60997 0.11373838851272922 RIPDCATASTY 11 Unmodified _RIPDCATASTY_ 0 0 0 REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.2821044921875 2 599.282063 1196.54957 -0.04862 -2.9137E-05 0.43359 0.00025984 0.38497 0.00023071 599.2822098289802 26.798 0.36143 23.761 23.512 23.873 -3.0365 28 18 2 0 0 0 0.46131 1 14743 14743 18.373 2.224 1 5491300 + 52492 17068 35445 36247 60998 60998 -0.04084027476301344 RIPDCATASTY 11 Unmodified _RIPDCATASTY_ 0 0 0 REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 599.282063 1196.54957 -0.40452 -0.00024242 0.084614 5.0708E-05 -0.31991 -0.00019172 599.2825011823629 23.392 0.42286 23.392 23.182 23.605 0 -0.18458 -0.00017046 NaN 18.373 47 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1235900 + 52493 17068 35445 36247 -0.04084027476301344 RIPDCATASTY 11 Unmodified _RIPDCATASTY_ 0 0 0 REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF REV__ENST00000492117.1_1_Y:21868632-21877911:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 599.282063 1196.54957 -0.04862 -2.9137E-05 0.43359 0.00025984 0.38497 0.00023071 599.2822098289802 26.798 0.36143 23.761 23.512 23.873 -3.0365 0.18458 0.00024781 NaN 18.373 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 5491300 + 52494 17068 35445 36247 -0.04084027476301344 RIPIPMARLVL 11 Unmodified _RIPIPMARLVL_ 0 0 0 ENSG00000162365|ENST00000371891|CYP4A22 ENSG00000162365|ENST00000371891|CYP4A22 ENSG00000162365|ENST00000371891|CYP4A22 MSMS AL20221201_MKP_PDAC_01 4 426.9434814453125 3 426.940804 1277.80058 NaN NaN NaN NaN NaN NaN NaN 91.634 1 85.458 84.958 85.958 -6.1757 0 0 0 0.8958 1 60580 60580 7.4771 0.43998 1 52495 6848 35446 36248 60999 60999 0.17279441026812492 RIPRFMLL 8 Unmodified _RIPRFMLL_ 0 0 0 ENSG00000146555|ENST00000404826|SDK1;nc|ENSG00000146555|Q7Z5N4-3|SDK1 ENSG00000146555|ENST00000404826|SDK1 ENSG00000146555|ENST00000404826|SDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3244018554688 2 523.320597 1044.62664 3.1669 0.0016573 1.7122 0.00089601 4.8791 0.0025533 523.3211262127741 99.635 0.27 99.599 99.477 99.747 -0.036301 13 9 3 0 0 0 0.80676 1 55341 55341 2.5775 0 1 2168200 52496 5787 35447 36249 61000 61000 0.1061128032133638 RIQESLDLMQ 10 Unmodified _RIQESLDLMQ_ 0 0 0 nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0-2|SPATA31C1;SPATA31A3|p.A948Gfs*28|1|0.22|ENSG00000275969|chr9:66987657-66987658|-/T|frameshift_variant;nc|ENSG00000230246|P0DKV0|SPATA31C1;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1 nc|ENSG00000177910|B4DYI2|SPATA31C2 nc|ENSG00000177910|B4DYI2|SPATA31C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5485534667969 3 411.5483 1231.62307 0.096887 3.9874E-05 0.29009 0.00011939 0.38698 0.00015926 411.54839035758056 62.164 0.19622 62.131 62.024 62.22 -0.032787 19 9 3 0 0 0 0.52097 1 33964 33964 9.7643 5.3581 1 11412000 52497 16409 35448 36250 61001 61001 0.016525209661494955 RIQESLDLMQ 10 Unmodified _RIQESLDLMQ_ 0 0 0 nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0-2|SPATA31C1;SPATA31A3|p.A948Gfs*28|1|0.22|ENSG00000275969|chr9:66987657-66987658|-/T|frameshift_variant;nc|ENSG00000230246|P0DKV0|SPATA31C1;ENSG00000185775|ENST00000332857|SPATA31A6;ENSG00000276581|ENST00000437823|SPATA31A5;ENSG00000276040|ENST00000619167|SPATA31A7;ENSG00000275969|ENST00000428649|SPATA31A3;ENSG00000204849|ENST00000377647|SPATA31A1 nc|ENSG00000177910|B4DYI2|SPATA31C2 nc|ENSG00000177910|B4DYI2|SPATA31C2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 411.5483 1231.62307 0.64083 0.00026373 0.23146 9.5256E-05 0.87229 0.00035899 411.5482184012392 62.577 0.26966 62.09 61.956 62.226 -0.48764 -0.020722 -4.1233E-05 NaN 9.7643 20 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2492600 52498 16409 35448 36250 0.016525209661494955 RIQLYERWWQK 11 Unmodified _RIQLYERWWQK_ 0 0 0 REV__nc|ENSG00000101624|Q8TAP6-3|CEP76 REV__nc|ENSG00000101624|Q8TAP6-3|CEP76 MSMS AL20221201_MKP_PDAC_01 4 803.434326171875 2 803.436067 1604.85758 NaN NaN NaN NaN NaN NaN NaN 66.055 1 59.88 59.38 60.38 -6.1757 0 0 0 0.94201 1 42932 42932 1.0715 0.72083 1 + 52499 18188 35449 36251 61002 61002 0.07934579836864941 RIQNQSPFR 9 Unmodified _RIQNQSPFR_ 0 0 0 REV__ENSG00000160471|ENST00000326529|COX6B2 REV__ENSG00000160471|ENST00000326529|COX6B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3137817382812 2 573.312346 1144.61014 0.80771 0.00046307 0.59125 0.00033897 1.399 0.00080204 573.3127448345191 50.766 0.80461 50.353 50.051 50.856 -0.41351 75 39 3 0 0 0 0.5029 1 27252 27252 7.2892 0.56607 1 13440000 + 52500 21547 35450 36252 61003 61003 0.04361870688944691 RIQQRPRAR 9 Unmodified _RIQQRPRAR_ 0 0 0 ENSG00000162571|ENST00000379289|TTLL10 ENSG00000162571|ENST00000379289|TTLL10 ENSG00000162571|ENST00000379289|TTLL10 MSMS AL20221201_MKP_PDAC_01 4 394.2447814941406 3 394.242645 1179.70611 NaN NaN NaN NaN NaN NaN NaN 108.67 1 102.49 101.99 102.99 -6.1757 0 0 0 0.85798 1 72617 72617 0.23584 0.028987 1 52501 6873 35451 36253 61004 61004 0.12344063319687848 RIRDVINVF 9 Unmodified _RIRDVINVF_ 0 0 0 nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;ENST00000467081.1_1_3:156870794-156876755:-|nuORF nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3363647460938 2 566.33529 1130.65603 0.23243 0.00013163 0.8351 0.00047295 1.0675 0.00060458 566.3361135393786 93.147 0.24379 86.972 86.84 87.084 -6.1757 34 17 3 0 0 0 0.037118 1 61620 61620 55.503 24.866 1 28043000 52502 7044 35452 36254 61005 61005 0.09592515871167961 RIRDVINVF 9 Unmodified _RIRDVINVF_ 0 0 0 nc|ENSG00000163660|Q9UK58-6|CCNL1;ENSG00000163660|ENST00000295926|CCNL1;nc|ENSG00000221978|Q96S94-5|CCNL2;nc|ENSG00000221978|Q96S94-2|CCNL2;nc|ENSG00000163660|Q9UK58-4|CCNL1;nc|ENSG00000221978|Q96S94-4|CCNL2;ENSG00000221978|ENST00000400809|CCNL2;ENST00000471930.5_1_1:1328164-1333737:-|nuORF;nc|ENSG00000163660|Q9UK58-5|CCNL1;ENST00000471044.1_1_3:156876653-156877916:-|nuORF;ENST00000467081.1_1_3:156870794-156876755:-|nuORF nc|ENSG00000163660|Q9UK58-6|CCNL1 nc|ENSG00000163660|Q9UK58-6|CCNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8935852050781 3 377.892619 1130.65603 0.58443 0.00022085 0.46406 0.00017536 1.0485 0.00039621 377.8927867212702 93.137 0.23279 86.961 86.823 87.056 -6.1757 22 16 2 0 0 0 0.082934 1 61624 61624 37.075 18.702 1 16255000 52503 7044 35452 36254 61006 61006 0.09592515871167961 RIREQLFSSL 10 Unmodified _RIREQLFSSL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5516357421875 3 416.906816 1247.69862 1.2887 0.00053726 0.83331 0.00034741 2.122 0.00088467 417.24170161510006 50.118 0.20438 50.069 49.986 50.191 -0.048824 16 9 3 0 0 0 0.23895 1 27101 27101 4.1895 0 1 1537900 52504 10258 35453 36255 61007 61007 0.08467866208752639 RIRGHVLSL 9 Unmodified _RIRGHVLSL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8888549804688 3 350.889209 1049.6458 0.060862 2.1356E-05 1.1749 0.00041227 1.2358 0.00043362 350.8893050821314 28.23 0.271 28.259 28.106 28.377 0.029564 23 10 3 0 0 0 0.062454 1 14689 14689 41.956 20.365 1 3245800 52505 4627 35454 36256 61008 61008 0.12295952936597132 RIRGHVLSL 9 Unmodified _RIRGHVLSL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MSMS AL20221201_MKP_PDAC_01 4 350.8898620605469 3 350.889209 1049.6458 NaN NaN NaN NaN NaN NaN NaN 86.947 1 80.771 80.271 81.271 -6.1757 0 0 0 0.32622 1 57319 57319 23.79 3.3752 1 52506 4627 35454 36256 61009 61009 0.12295952936597132 RIRGPCLRVPG 11 Unmodified _RIRGPCLRVPG_ 0 0 0 REV__CON__P12763 REV__CON__P12763 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5766906738281 3 408.576636 1222.70808 -0.19492 -7.964E-05 1.2885 0.00052645 1.0936 0.00044681 408.57713249160463 38.205 0.39188 38.222 37.963 38.355 0.01704 51 17 4 0 0 0 0.73237 1 20267 20267 1.2148 0.14337 1 6599100 + + 52507 16848 35455 36257 61010 61010 0.10563356013267367 RIRIFEDIRRL 11 Unmodified _RIRIFEDIRRL_ 0 0 0 nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.4799499511719 4 372.47958 1485.88921 1.5058 0.00056089 -0.16693 -6.2177E-05 1.3389 0.00049872 372.47961797782244 30.349 0.29317 26.852 26.698 26.992 -3.497 26 14 3 0 0 0 0.73992 1 17143 17143 0.50596 0 1 20999000 52508 10894 35456 36258 61011 61011 0.16570572590831034 RIRILLSSCS 10 Unmodified _RIRILLSSCS_ 0 0 0 ENST00000450917.1_1_2:3523627-3523702:+|nuORF ENST00000450917.1_1_2:3523627-3523702:+|nuORF ENST00000450917.1_1_2:3523627-3523702:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.1965026855469 3 383.225381 1146.65431 1.287 0.0004932 1.22 0.00046755 2.507 0.00096075 383.22606938884155 46.79 0.15776 46.757 46.656 46.814 -0.033421 9 7 2 0 0 0 0.2399 1 25133 25133 1.9064 0.1641 1 1411600 52509 13514 35457 36259 61012 61012 0.08685138790951896 RIRKTQVRPR 10 Unmodified _RIRKTQVRPR_ 0 0 0 ENST00000462135.1_1_7:73118646-73133961:-|nuORF ENST00000462135.1_1_7:73118646-73133961:-|nuORF ENST00000462135.1_1_7:73118646-73133961:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.4190673828125 2 655.418011 1308.82147 NaN NaN NaN NaN NaN NaN NaN 104.05 1 104 103.5 104.5 -0.048737 0 0 0 1.0024 1 57772 57772 0.40072 0 1 52510 13672 35458 36260 61013 61013 0.1794116745068095 RIRMTDGRTL 10 Unmodified _RIRMTDGRTL_ 0 0 0 nc|ENSG00000183011|Q9BRA0-2|NAA38;ENSG00000183011|ENST00000575771|NAA38 nc|ENSG00000183011|Q9BRA0-2|NAA38 nc|ENSG00000183011|Q9BRA0-2|NAA38 MSMS AL20221201_MKP_PDAC_01 4 406.8966369628906 3 406.896034 1217.66627 NaN NaN NaN NaN NaN NaN NaN 25.367 1 22.484 21.984 22.984 -2.8831 0 0 0 0.64607 1 13884 13884 19.144 9.6 1 52511 16442 35459 36261 61014 61014 0.06614755534110373 RIRMTYYH 8 Unmodified _RIRMTYYH_ 0 0 0 REV__ENSG00000013293|ENST00000231706|SLC7A14 REV__ENSG00000013293|ENST00000231706|SLC7A14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5307922363281 3 380.530804 1138.57058 -0.62386 -0.0002374 2.1785 0.000829 1.5547 0.00059161 380.531744724814 15.262 0.093748 15.262 15.215 15.309 0 31 21 2 0 0 0 0.80624 1 7353 7353 1.8442 1.3383 1 260870 + 52512 17072 35460 36262 61015 61015 0.006840274138539826 RIRPLDFY 8 Unmodified _RIRPLDFY_ 0 0 0 REV__ENSG00000173064|ENST00000682272|HECTD4 REV__ENSG00000173064|ENST00000682272|HECTD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7728881835938 2 540.303458 1078.59236 0.2385 0.00012886 0.029543 1.5962E-05 0.26804 0.00014482 540.3036883169209 78.31 0.16204 78.31 78.197 78.359 0 9 6 2 0 0 0 8.7369 1 43514 43514 0.79363 0 1 276690 + 52513 22700 35461 36263 61016 61016 0.05621155434073444 RIRPTAVTL 9 Unmodified _RIRPTAVTL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.82421875 2 513.824558 1025.63456 1.1335 0.00058241 -0.38278 -0.00019668 0.75069 0.00038573 513.8244387782029 37.492 0.38049 33.208 33.007 33.387 -4.2835 54 22 3 0 0 0 0.10247 1 21935 21935 32.786 7.3864 1 37074000 52514 1777 35462 36264 61017 61017 0.12277130842448969 RIRPTAVTL 9 Unmodified _RIRPTAVTL_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.824558 1025.63456 0.17053 8.7622E-05 0.22368 0.00011493 0.3942 0.00020255 513.8246561625758 32.908 0.24451 32.938 32.822 33.067 0.029743 -0.1352 0.00031677 NaN 32.786 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 6024500 52515 1777 35462 36264 0.12277130842448969 RIRQNVQVF 9 Unmodified _RIRQNVQVF_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2278747558594 3 387.228001 1158.66217 -0.20855 -8.0755E-05 -0.15339 -5.9398E-05 -0.36194 -0.00014015 387.2279346809927 30.83 0.27831 30.861 30.737 31.015 0.030104 29 11 3 0 0 0 0.14602 1 16110 16110 20.415 8.9198 1 7863900 52516 9767;6130 35463 36265 61018 61018 0.08919034102700607 RIRQNVQVF 9 Unmodified _RIRQNVQVF_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2277526855469 3 387.228001 1158.66217 1.3253 0.00051318 0.21846 8.4592E-05 1.5437 0.00059778 387.22806231645137 34.834 0.4169 30.739 30.518 30.935 -4.0951 68 24 4 0 0 0 0.087258 2 20048 20048;20174 27.629 10.516 1 25544000 52517 9767;6130 35463 36265 61019;61020 61019 0.08919034102700607 RIRQNVQVF 9 Unmodified _RIRQNVQVF_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3370361328125 2 580.338364 1158.66217 0.95321 0.00055318 -1.4169 -0.0008223 -0.46372 -0.00026912 580.3372469397207 34.851 0.40184 30.755 30.533 30.935 -4.0951 52 23 3 0 0 0 0.06187 1 20184 20184 42.095 6.0504 1 17763000 52518 9767;6130 35463 36265 61021 61021 0.08919034102700607 RIRTFAYLL 9 Unmodified _RIRTFAYLL_ 0 0 0 REV__ENSG00000113643|ENST00000231572|RARS1 REV__ENSG00000113643|ENST00000231572|RARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.9017944335938 3 384.901114 1151.68151 NaN NaN NaN NaN NaN NaN NaN 28.482 1 28.512 28.012 29.012 0.029564 0 0 0 0.61417 1 14831 14831 12.175 0.68004 1 + 52519 18883 35464 36266 61022 61022 0.11173990393581335 RIRVIKKKK 9 Unmodified _RIRVIKKKK_ 0 0 0 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 ENSG00000088882|ENST00000380605|CPXM1 MSMS AL20221201_MKP_PDAC_01 4 390.2721252441406 3 390.28367 1167.82918 NaN NaN NaN NaN NaN NaN NaN 103.68 1 97.504 97.004 98.004 -6.1757 0 0 0 0.86004 1 69496 69496 0.26902 0.26902 1 52520 1501 35465 36267 61023 61023 0.25197926718237795 RIRVRVLFLLL 11 Unmodified _RIRVRVLFLLL_ 0 0 0 REV__ENST00000413366.7_1_17:64492348-64637575:+|nuORF REV__ENST00000413366.7_1_17:64492348-64637575:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.4774169921875 2 699.477006 1396.93946 NaN NaN NaN NaN NaN NaN NaN 86.905 1 86.402 85.902 86.902 -0.50318 0 0 0 0.9435 1 47546 47546 0 0 1 + 52521 26731 35466 36268 61024 61024 0.25686726986646136 RISAIFSTF 9 Unmodified _RISAIFSTF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.289794921875 2 521.290017 1040.56548 0.18879 9.8414E-05 -0.5296 -0.00027607 -0.34081 -0.00017766 521.2898319856763 69.821 0.45733 69.852 69.611 70.068 0.030914 40 23 2 0 0 0 0.036857 2 38334 38334;38450 51.63 7.7715 1 23015000 52522 2385 35467 36269 61025;61026 61025 0.0468204682290434 RISAIFSTF 9 Unmodified _RISAIFSTF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.290771484375 2 521.290017 1040.56548 1.4531 0.0007575 0.73997 0.00038574 2.1931 0.0011432 521.2901872343086 95.845 0.21227 89.669 89.535 89.748 -6.1757 23 12 3 0 0 0 0.078314 1 63477 63477 38.176 2.0485 1 56564000 52523 2385 35467 36269 61027 61027 0.0468204682290434 RISPVIYHF 9 Unmodified _RISPVIYHF_ 0 0 0 nc|ENSG00000291317|P0DTL6-2|ZFTRAF1;nc|ENSG00000291317|P0DTL6-1|ZFTRAF1;ENSG00000187954|ENST00000530374|ZFTRAF1 nc|ENSG00000291317|P0DTL6-2|ZFTRAF1 nc|ENSG00000291317|P0DTL6-2|ZFTRAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.320556640625 2 566.319109 1130.62366 1.1101 0.0006287 -0.47007 -0.00026621 0.64007 0.00036249 566.3185517911219 50.599 0.1992 50.545 50.449 50.648 -0.053875 24 9 3 0 0 0 0.098164 1 27391 27391 36.127 26.78 1 3373000 52524 9610 35468 36270 61028 61028 0.06357728468174173 RISSEGILNFT 11 Unmodified _RISSEGILNFT_ 0 0 0 REV__nc|ENSG00000203710|P17927|CR1 REV__nc|ENSG00000203710|P17927|CR1 MSMS AL20221201_MKP_PDAC_01 4 618.8330078125 2 618.832777 1235.651 NaN NaN NaN NaN NaN NaN NaN 48.942 1 43.545 43.045 44.045 -5.3961 0 0 0 0.73356 1 30525 30525 15.248 1.3424 1 + 52525 24116 35469 36271 61029 61029 0.04260167217898925 RISTINILL 9 Unmodified _RISTINILL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8356323242188 2 521.834591 1041.65463 1.303 0.00067994 0.96941 0.00050587 2.2724 0.0011858 521.8350446888735 96.28 0.26362 90.104 90.025 90.289 -6.1757 21 15 2 0 0 0 0.085319 1 63787 63787 36.506 3.7205 1 13231000 52526 5401 35470 36272 61030 61030 0.13546881782417586 RISYFSHF 8 Unmodified _RISYFSHF_ 0 0 0 ENST00000514719.1_1_5:145883057-145886815:+|nuORF ENST00000514719.1_1_5:145883057-145886815:+|nuORF ENST00000514719.1_1_5:145883057-145886815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8472900390625 3 352.846898 1055.51886 1.8719 0.0006605 -0.41921 -0.00014792 1.4527 0.00051258 352.84664256857974 20.975 0.38205 18.282 18.002 18.384 -2.693 40 22 2 0 0 0 0.78849 1 11230 11230 6.7232 0.99131 1 5387600 52527 14657 35471 36273 61031 61031 -0.006673930083934465 RITEFCHRF 9 Carbamidomethyl (C) _RITEFC(Carbamidomethyl (C))HRF_ RITEFC(1)HRF RITEFC(86)HRF 0 1 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5441589355469 3 422.545113 1264.61351 1.223 0.00051675 -1.1 -0.00046479 0.12297 5.1961E-05 422.5447546262164 32.173 0.34654 28.317 28.086 28.432 -3.8562 37 19 3 0 0 0 0.0090383 1 18265 18265 85.764 60.807 1 25583000 52528 9390 35472 36274 61032 61032 875 -0.008212025287093638 RITLWNRDL 9 Unmodified _RITLWNRDL_ 0 0 0 ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.2063598632812 3 396.22789 1185.66184 1.4683 0.00058178 -0.99341 -0.00039362 0.4749 0.00018817 396.22750748333397 35.838 0.24343 31.645 31.512 31.755 -4.1928 24 15 2 0 0 0 0.18882 1 20819 20819 10.8 0 1 4378200 52529 8086 35473 36275 61033 61033 0.07643614382845954 RITNQVIYL 9 Unmodified _RITNQVIYL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3291015625 2 560.329673 1118.64479 0.17875 0.00010016 0.20353 0.00011404 0.38228 0.0002142 560.3299355771919 55.669 0.22799 55.601 55.497 55.725 -0.068741 28 11 3 0 0 0 0.047714 1 30241 30241 45.74 18.517 1 9015200 52530 9907 35474 36276 61034 61034 0.09021693777026485 RITNQVIYL 9 Unmodified _RITNQVIYL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.329673 1118.64479 -0.29798 -0.00016697 -0.76896 -0.00043087 -1.0669 -0.00059784 560.3288698817107 56.04 0.18208 55.555 55.471 55.654 -0.48554 0.099827 -0.00064558 NaN 45.74 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2608800 52531 9907 35474 36276 0.09021693777026485 RITNQVIYL 9 Unmodified _RITNQVIYL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 560.329673 1118.64479 1.2684 0.00071074 -0.42641 -0.00023893 0.84203 0.00047182 560.3298192286915 61.357 0.37724 55.209 55.055 55.432 -6.1478 -0.24571 -0.0002617 NaN 45.74 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 25508000 52532 9907 35474 36276 0.09021693777026485 RITQIYLII 9 Unmodified _RITQIYLII_ 0 0 0 REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.2414245605469 3 378.241137 1131.70158 NaN NaN NaN NaN NaN NaN NaN 64.801 1 58.626 58.126 59.126 -6.1757 0 0 0 0.08368 1 42017 42017 47.594 1.8948 1 + 52533 27874 35475 36277 61035 61035 0.14099741333575366 RITQIYLII 9 Unmodified _RITQIYLII_ 0 0 0 REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF REV__ENST00000490154.1_1_16:1887712-1889402:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.2417297363281 3 378.241137 1131.70158 NaN NaN NaN NaN NaN NaN NaN 65.217 1 59.042 58.542 59.542 -6.1757 0 0 0 0.15231 1 42322 42322 36.506 0 1 + 52534 27874 35475 36277 61036 61036 0.14099741333575366 RIYEEMNNMS 10 Unmodified _RIYEEMNNMS_ 0 0 0 nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 nc|ENSG00000165533|Q8TAM2-3|TTC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.7802734375 2 643.77883 1285.54311 0.02357 1.5174E-05 2.4117 0.0015526 2.4353 0.0015678 643.7805530613554 69.434 0.27023 69.434 69.286 69.557 0 27 11 3 0 0 0 0.6966 1 38665 38665 3.2813 0 1 1897500 52535 7358 35476 36278 61037 61037 -0.08824288699338467 RIYHQFIII 9 Unmodified _RIYHQFIII_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.572998046875 3 401.572998 1201.69716 -0.18902 -7.5906E-05 0.89927 0.00036112 0.71025 0.00028522 401.57344721065846 33.164 0.56678 33.192 32.936 33.503 0.028931 91 24 5 0 0 0 0.40476 1 17575 17575 12.241 0 1 35471000 52536 4094 35477 36279 61038 61038 0.1043827691066781 RIYLVNNC 8 Unmodified _RIYLVNNC_ 0 0 0 REV__ENSG00000139343|ENST00000266735|SNRPF REV__ENSG00000139343|ENST00000266735|SNRPF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7590637207031 2 497.760569 993.506586 NaN NaN NaN NaN NaN NaN NaN 17.234 1 17.248 16.748 17.748 0.013865 0 0 0 0.97444 1 8554 8554 0.69038 0 1 + 52537 20405 35478 36280 61039 61039 0.009572472569061574 RIYRGLGSL 9 Unmodified _RIYRGLGSL_ 0 0 0 ENST00000566802.5_1_16:74382766-74386124:-|nuORF;ENST00000429810.2_1_16:74382766-74394769:-|nuORF ENST00000566802.5_1_16:74382766-74386124:-|nuORF ENST00000566802.5_1_16:74382766-74386124:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8096313476562 2 517.808908 1033.60326 0.13308 6.8909E-05 -0.35158 -0.00018205 -0.2185 -0.00011314 517.8094470384079 53.25 0.30238 53.187 53.024 53.326 -0.063423 32 14 3 0 0 0 0.30562 1 28848 28848 16.942 0 1 3752500 52538 13223 35479 36281 61040 61040 0.08780557808381673 RIYRSLIWKLR 11 Unmodified _RIYRSLIWKLR_ 0 0 0 ENST00000424881.5_3_7:99158252-99169400:+|nuORF ENST00000424881.5_3_7:99158252-99169400:+|nuORF ENST00000424881.5_3_7:99158252-99169400:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.9809875488281 3 501.980539 1502.91979 0.30534 0.00015327 -0.14734 -7.3961E-05 0.158 7.9313E-05 501.98033841005747 74.01 0.36895 74.054 73.864 74.233 0.043983 50 16 4 0 0 0 0.74203 1 40861 40861 0.08335 0.08335 1 18836000 52539 13155 35480 36282 61041 61041 0.18844350975882662 RIYRSLIWKLR 11 Unmodified _RIYRSLIWKLR_ 0 0 0 ENST00000424881.5_3_7:99158252-99169400:+|nuORF ENST00000424881.5_3_7:99158252-99169400:+|nuORF ENST00000424881.5_3_7:99158252-99169400:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.6666564941406 3 501.980539 1502.91979 0.91298 0.0004583 -1.0463 -0.0005252 -0.13328 -6.6902E-05 501.9801080616584 98.558 0.15755 92.382 92.308 92.465 -6.1757 27 11 3 0 0 0 0.73115 1 65333 65333 0.45452 0 1 102570000 52540 13155 35480 36282 61042 61042 0.18844350975882662 RIYYWYWRRTL 11 Unmodified _RIYYWYWRRTL_ 0 0 0 ENSG00000163686|ENST00000478253|ABHD6 ENSG00000163686|ENST00000478253|ABHD6 ENSG00000163686|ENST00000478253|ABHD6 MSMS AL20221201_MKP_PDAC_01 4 838.4486083984375 2 838.446434 1674.87832 NaN NaN NaN NaN NaN NaN NaN 86.345 1 80.17 79.67 80.67 -6.1757 0 0 0 0.94337 1 56922 56922 0 0 1 52541 7049 35481 36283 61043 61043 0.06787170216512095 RKAGPCGA 8 Unmodified _RKAGPCGA_ 0 0 0 REV__ENST00000422098.5_1_X:122993624-123019513:+|nuORF REV__ENST00000422098.5_1_X:122993624-123019513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2007446289062 2 380.200148 758.385742 2.5484 0.00096891 -2.1923 -0.00083353 0.35609 0.00013539 380.1993984901186 99.928 0.32273 99.891 99.723 100.05 -0.036301 21 11 2 0 0 0 0.80975 1 55533 55533 0.79363 0 1 1378700 + 52542 26851 35482 36284 61044 61044 -0.003115356659009194 RKAGVAHS 8 Unmodified _RKAGVAHS_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2371826171875 2 413.238119 824.461684 NaN NaN NaN NaN NaN NaN NaN 15.717 1 15.723 15.223 16.223 0.0057774 0 0 0 0.97444 1 7846 7846 0.69038 0 1 52543 1720 35483 36285 61045 61045 0.04243184505889985 RKAKGAPC 8 Unmodified _RKAKGAPC_ 0 0 0 REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1 REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.7359008789062 2 415.736897 829.459241 -0.16787 -6.9791E-05 -2.6182 -0.0010885 -2.7861 -0.0011583 415.73568578440586 55.444 0.17771 55.375 55.278 55.456 -0.068737 11 8 2 0 0 0 0.80676 1 30147 30147 2.5775 0.51773 1 1305000 + 52544 18328 35484 36286 61046 61046 0.037690127765813486 RKALHVNFKDM 11 Unmodified _RKALHVNFKDM_ 0 0 0 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 ENSG00000125965|ENST00000374369|GDF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.8851928710938 3 453.583568 1357.72887 NaN NaN NaN NaN NaN NaN NaN 15.318 1 15.318 14.818 15.818 0 0 0 0 0.94184 1 7369 7369 0.40827 0 1 52545 3913 35485 36287 61047 61047 0.06431901602286416 RKALVRRLIT 10 Unmodified _RKALVRRLIT_ 0 0 0 REV__TP53BP2-CAPN2|2|fusion REV__TP53BP2-CAPN2|2|fusion MSMS AL20221201_MKP_PDAC_01 4 613.4044189453125 2 613.414406 1224.81426 NaN NaN NaN NaN NaN NaN NaN 104.66 1 98.483 97.983 98.983 -6.1757 0 0 0 1.0024 1 70074 70074 0.40072 0 1 + 52546 30124 35486 36288 61048 61048 0.21084434850263278 RKCFVIAKEY 10 Unmodified _RKCFVIAKEY_ 0 0 0 REV__nc|ENSG00000101977|P10911-6|MCF2 REV__nc|ENSG00000101977|P10911-6|MCF2 MSMS AL20221201_MKP_PDAC_01 4 419.5674438476562 3 419.565514 1255.67471 NaN NaN NaN NaN NaN NaN NaN 17.258 1 14.672 14.172 15.172 -2.5866 0 0 0 0.94014 1 9008 9008 3.3196 0.24738 1 + 52547 18210 35487 36289 61049 61049 0.05710309450751083 RKCMLMSMLYI 11 Unmodified _RKCMLMSMLYI_ 0 0 0 REV__ENST00000418527.1_1_2:110935626-110935722:-|nuORF REV__ENST00000418527.1_1_2:110935626-110935722:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 694.8497314453125 2 694.849689 1387.68483 NaN NaN NaN NaN NaN NaN NaN 107.53 1 107.48 106.98 107.98 -0.047607 0 0 0 0.9435 1 59574 59574 0 0 1 + 52548 26804 35488 36290 61050 61050 0.006490897977982968 RKCRWWRPC 9 Unmodified _RKCRWWRPC_ 0 0 0 REV__ENST00000599470.5_2_19:39616427-39616532:+|nuORF REV__ENST00000599470.5_2_19:39616427-39616532:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8878784179688 3 430.886816 1289.63862 NaN NaN NaN NaN NaN NaN NaN 26.372 1 26.34 25.84 26.84 -0.031708 0 0 0 0.85798 1 13559 13559 0.23584 0.076522 1 + 52549 29241 35489 36291 61051 61051 0.005385737928918388 RKDAGPPGAG 10 Unmodified _RKDAGPPGAG_ 0 0 0 ENST00000367108.7_1_1:206809048-206811012:+|nuORF;ENSG00000143479|ENST00000367109|DYRK3 ENST00000367108.7_1_1:206809048-206811012:+|nuORF ENST00000367108.7_1_1:206809048-206811012:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.9361267089844 2 463.246141 924.477728 -0.45207 -0.00020942 0.85071 0.00039409 0.39864 0.00018467 463.2464944060508 34.912 0.13601 34.721 34.606 34.742 -0.19131 6 5 2 0 0 0 0.70951 1 18228 18228 1.8442 0 1 652800 52550 5518 35490 36292 61052 61052 0.012468459521414843 RKDDTKSAAL 10 Unmodified _RKDDTKSAAL_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8721618652344 3 368.871772 1103.59349 -0.50407 -0.00018594 0.14751 5.441E-05 -0.35656 -0.00013153 368.8719092139444 18.895 0.31546 18.895 18.729 19.045 0 86 26 4 0 0 0 0.22922 2 9371 9371;9469 31.636 5.6384 1 17084000 52551 5688 35491 36293 61053;61054 61053 0.04583325012322348 RKDDTKSAAL 10 Unmodified _RKDDTKSAAL_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8714294433594 3 368.871772 1103.59349 NaN NaN NaN NaN NaN NaN NaN 18.79 1 18.796 18.296 19.296 0.0060463 0 0 0 0.5282 1 9536 9536 24.882 9.1429 1 52552 5688 35491 36293 61055 61055 0.04583325012322348 RKDDTKSAAL 10 Unmodified _RKDDTKSAAL_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8729858398438 3 368.871772 1103.59349 1.7199 0.00063441 0.97974 0.0003614 2.6996 0.0009958 368.87209332085615 19.958 0.42392 17.302 17.09 17.514 -2.6564 99 26 5 0 0 0 0.16688 2 10631 10527;10631 37.771 14.996 1 74002000 52553 5688 35491 36293 61056;61057 61057 0.04583325012322348 RKDDTKSAAL 10 Unmodified _RKDDTKSAAL_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000145362|Q01484-2|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.871772 1103.59349 -0.56774 -0.00020942 -3.0467 -0.0011239 -3.6145 -0.0013333 368.8708269249325 18.82 0.078684 18.843 18.795 18.874 0.023106 -0.026171 -0.0034695 NaN 31.636 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 546540 52554 5688 35491 36293 0.04583325012322348 RKDKFSRLRQL 11 Unmodified _RKDKFSRLRQL_ 0 0 0 REV__ENSG00000156232|ENST00000286760|WHAMM REV__ENSG00000156232|ENST00000286760|WHAMM MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0226440429688 4 362.471755 1445.85791 0.82919 0.00030056 0.73024 0.00026469 1.5594 0.00056525 362.7228069447292 14.543 0.14214 12.041 11.959 12.101 -2.5029 55 23 3 0 0 0 0.30587 1 7414 7414 1.2148 0.70888 1 16383000 + 52555 21321 35492 36294 61058 61058 0.15281999556736992 RKEKKRRR 8 Unmodified _RKEKKRRR_ 0 0 0 ENSG00000151353|ENST00000281017|TMEM18;nc|ENSG00000151353|Q96B42-2|TMEM18;ENST00000477202.1_1_2:669582-675654:-|nuORF;ENST00000497508.1_1_2:669582-669891:-|nuORF ENSG00000151353|ENST00000281017|TMEM18 ENSG00000151353|ENST00000281017|TMEM18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.3763427734375 2 578.878522 1155.74249 1.5904 0.00092063 2.7377 0.0015848 4.3281 0.0025054 578.8780476461363 104.56 0.068924 98.382 98.348 98.417 -6.1757 5 3 2 0 0 0 8.7369 1 70023 70023 0.6015 0 1 3146100 52556 6107 35493 36295 61059 61059 0.1708494021640945 RKELLWSTEM 10 Unmodified _RKELLWSTEM_ 0 0 0 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.562744140625 3 431.560429 1291.65946 0.26515 0.00011443 3.7597 0.0016225 4.0249 0.001737 431.5629914737466 34.279 0.22816 34.306 34.163 34.391 0.027405 17 10 2 0 0 0 0.69917 1 18078 18078 1.4551 0.24029 1 2264200 52557 10701 35494 36296 61060 61060 0.02529397862872429 RKFDGKDFRWI 11 Unmodified _RKFDGKDFRWI_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS AL20221201_MKP_PDAC_01 4 489.9353942871094 3 489.933366 1466.77827 NaN NaN NaN NaN NaN NaN NaN 23.583 1 20.756 20.256 21.256 -2.8273 0 0 0 0.93777 1 12772 12772 4.1166 2.3744 1 52558 640 35495 36297 61061 61061 0.06354932882754838 RKFFNFENNL 10 Unmodified _RKFFNFENNL_ 0 0 0 REV__IL7|p.H70R|1|0.2|ENSG00000104432|chr8:78740021-78740021|T/C|missense_variant REV__IL7|p.H70R|1|0.2|ENSG00000104432|chr8:78740021-78740021|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3438110351562 2 664.840936 1327.66732 0.26788 0.0001781 -0.458 -0.0003045 -0.19013 -0.0001264 664.8403404182787 73.049 0.26622 73.049 72.883 73.149 0 32 11 4 0 0 0 0.54684 1 40621 40621 13.906 2.4113 1 2078100 + 52559 18357 35496 36298 61062 61062 0.016592931746799877 RKFRTPPP 8 Unmodified _RKFRTPPP_ 0 0 0 REV__ENST00000497512.5_1_4:78078410-78106259:+|nuORF REV__ENST00000497512.5_1_4:78078410-78106259:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.7984924316406 2 499.798343 997.582134 NaN NaN NaN NaN NaN NaN NaN 19.878 1 17.222 16.722 17.722 -2.6564 0 0 0 0.97444 1 10561 10561 2.8892 0.31174 1 + 52560 27978 35497 36299 61063 61063 0.08324592499513983 RKGAAPAR 8 Unmodified _RKGAAPAR_ 0 0 0 ENST00000536219.5_1_12:64173626-64178865:+|nuORF;ENSG00000118600|ENST00000261234|RXYLT1 ENST00000536219.5_1_12:64173626-64178865:+|nuORF ENST00000536219.5_1_12:64173626-64178865:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.7539367675781 2 413.753936 825.493319 -0.064852 -2.6833E-05 0.66186 0.00027385 0.59701 0.00024702 413.7541690985385 72.511 0.81653 72.553 72.151 72.968 0.041725 58 38 2 0 0 0 0.80722 1 39962 39962 2.3027 0 1 3346200 52561 3383 35498 36300 61064 61064 0.07359177259843364 RKGDLLKII 9 Unmodified _RKGDLLKII_ 0 0 0 REV__nc|ENSG00000248905|Q68DA7-5|FMN1 REV__nc|ENSG00000248905|Q68DA7-5|FMN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.352783203125 2 528.350409 1054.68626 1.5895 0.00083982 0.47577 0.00025137 2.0653 0.0010912 528.3502531469469 103.79 0.25016 97.611 97.547 97.797 -6.1757 128 72 3 0 0 0 0.60664 1 69536 69536 1.8442 0 1 13374000 + 52562 24491 35499 36301 61065 61065 0.1611087453638902 RKGGGGPK 8 Unmodified _RKGGGGPK_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5101013183594 2 378.727387 755.44022 1.341 0.00050787 -0.91828 -0.00034778 0.42271 0.00016009 378.7270422722533 18.944 0.26673 16.323 16.205 16.471 -2.6215 24 16 2 0 0 0 0.81107 1 10032 10032 0 0 1 2501500 52563 6006 35500 36302 61066 61066 0.05271799477179684 RKGHGTGG 8 Unmodified _RKGHGTGG_ 0 0 0 REV__ENST00000324041.5_1_19:51412052-51412651:-|nuORF REV__ENST00000324041.5_1_19:51412052-51412651:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2066040039062 2 385.206818 768.399084 0.59313 0.00022848 -1.0286 -0.00039624 -0.43551 -0.00016776 385.2063066929975 23.688 0.42551 20.861 20.632 21.058 -2.8273 46 25 2 0 0 0 0.79887 1 12887 12887 7.2892 2.5332 1 13393000 + 52564 25529 35501 36303 61067 61067 0.005620384377152732 RKGLLKLPF 9 Unmodified _RKGLLKLPF_ 0 0 0 ENSG00000149243|ENST00000539798|KLHL35;ENST00000460787.1_1_11:75137492-75141101:-|nuORF;nc|ENSG00000149243|Q6PF15-2|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3551635742188 2 536.355494 1070.69644 NaN NaN NaN NaN NaN NaN NaN 103.77 1 103.72 103.22 104.22 -0.048737 0 0 0 0.8622 1 57627 57627 0 0 1 52565 5993 35502 36304 61068 61068 0.16391482261587953 RKGVELKDI 9 Unmodified _RKGVELKDI_ 0 0 0 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 MSMS AL20221201_MKP_PDAC_01 4 529.2643432617188 2 529.321848 1056.62914 NaN NaN NaN NaN NaN NaN NaN 77.294 1 71.119 70.619 71.619 -6.1757 0 0 0 0.41346 1 50556 50556 19.257 3.1079 1 52566 2982 35503 36305 61069 61069 0.10309407259978798 RKHHEKFLSWN 11 Unmodified _RKHHEKFLSWN_ 0 0 0 REV__nc|ENSG00000119004|Q6UW02-2|CYP20A1 REV__nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7959594726562 3 494.596865 1480.76877 0.86207 0.00042638 -1.1467 -0.00056715 -0.28463 -0.00014077 494.5965992820689 58.398 0.29501 58.337 58.175 58.47 -0.060719 21 14 2 0 0 0 0.30587 1 31728 31728 1.2148 0 1 2044600 + 52567 29600 35504 36306 61070 61070 0.047611645972438055 RKHKDLYL 8 Unmodified _RKHKDLYL_ 0 0 0 nc|ENSG00000077279|O43602-2|DCX;nc|ENSG00000077279|O43602|DCX nc|ENSG00000077279|O43602-2|DCX nc|ENSG00000077279|O43602-2|DCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8140258789062 2 536.816733 1071.61891 1.1582 0.00062177 -3.1675 -0.0017004 -2.0092 -0.0010786 536.8145023626981 81.257 0.53276 81.317 80.892 81.425 0.059929 35 20 3 0 0 0 0.75262 1 44796 44796 12.532 0 1 3204700 52568 16053 35505 36307 61071 61071 0.08596844325415987 RKIFRLIKK 9 Unmodified _RKIFRLIKK_ 0 0 0 ENST00000392859.7_1_11:118471445-118471652:+|nuORF ENST00000392859.7_1_11:118471445-118471652:+|nuORF ENST00000392859.7_1_11:118471445-118471652:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8896484375 2 601.416417 1200.81828 NaN NaN NaN NaN NaN NaN NaN 104.32 1 104.27 103.77 104.77 -0.048737 0 0 0 0.8622 1 57920 57920 0 0 1 52569 12684 35506 36308 61072 61072 0.22590524343968355 RKILRPGRRLF 11 Unmodified _RKILRPGRRLF_ 0 0 0 ENST00000530529.5_1_11:108357029-108357155:-|nuORF ENST00000530529.5_1_11:108357029-108357155:-|nuORF ENST00000530529.5_1_11:108357029-108357155:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 706.4600219726562 2 706.459679 1410.90481 NaN NaN NaN NaN NaN NaN NaN 90.505 1 90.01 89.51 90.51 -0.49457 0 0 0 0.9435 1 49471 49471 0 0 1 52570 14892 35507 36309 61073 61073 0.21578903898534918 RKIPVKNTL 9 Unmodified _RKIPVKNTL_ 0 0 0 REV__ENSG00000113532|ENST00000231461|ST8SIA4 REV__ENSG00000113532|ENST00000231461|ST8SIA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.9015808105469 3 356.901114 1067.68151 1.8673 0.00066644 -0.64565 -0.00023043 1.2216 0.000436 356.90086035595164 21.064 0.49033 18.371 18.134 18.624 -2.693 98 27 5 0 0 0 0.03568 1 11281 11281 47.594 16.326 1 143890000 + 52571 18872 35508 36310 61074 61074 0.1503799039360274 RKKAKILLKKF 11 Unmodified _RKKAKILLKKF_ 0 0 0 nc|ENSG00000136522|Q9HD33-3|MRPL47;nc|ENSG00000136522|Q9HD33-2|MRPL47;ENSG00000136522|ENST00000476781|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 nc|ENSG00000136522|Q9HD33-3|MRPL47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.9786376953125 2 686.979382 1371.94421 NaN NaN NaN NaN NaN NaN NaN 13.085 1 13.094 12.594 13.594 0.0096512 0 0 0 0.9435 1 6448 6448 0 0 1 52572 4831 35509 36311 61075 61075 0.27311611129380253 RKKEAFILL 9 Unmodified _RKKEAFILL_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3630981445312 2 559.358234 1116.70191 1.743 0.00097493 0.17258 9.6535E-05 1.9155 0.0010715 559.3584794191044 104.83 0.13221 98.651 98.573 98.705 -6.1757 33 14 3 0 0 0 0.59218 1 70189 70189 1.8442 0 1 29108000 + 52573 23718 35510 36312 61076 61076 0.1482316105341397 RKKGGAAA 8 Unmodified _RKKGGAAA_ 0 0 0 REV__ENSG00000146109|ENST00000274849|ABT1 REV__ENSG00000146109|ENST00000274849|ABT1 MSMS AL20221201_MKP_PDAC_01 4 379.7358703613281 2 379.735212 757.455871 NaN NaN NaN NaN NaN NaN NaN 105.37 1 99.193 98.693 99.693 -6.1757 0 0 0 0.97444 1 70606 70606 2.5775 0 1 + 52574 20810 35511 36313 61077 61077 0.06744085994216675 RKKIIRQLYLK 11 Unmodified _RKKIIRQLYLK_ 0 0 0 SACS|p.R4331Q|1|0.14|ENSG00000151835|chr13:23330884-23330884|C/T|missense_variant SACS|p.R4331Q|1|0.14|ENSG00000151835|chr13:23330884-23330884|C/T|missense_variant SACS|p.R4331Q|1|0.14|ENSG00000151835|chr13:23330884-23330884|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 729.985595703125 2 729.985195 1457.95584 NaN NaN NaN NaN NaN NaN NaN 109.1 1 109.05 108.55 109.55 -0.047607 0 0 0 0.9435 1 60405 60405 0 0 1 52575 30154 35512 36314 61078 61078 0.24517808152745602 RKKKFHKK 8 Unmodified _RKKKFHKK_ 0 0 0 REV__ENSG00000115816|ENST00000234170|CEBPZ REV__ENSG00000115816|ENST00000234170|CEBPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3638916015625 2 550.364185 1098.71382 -0.58489 -0.0003219 -0.3328 -0.00018316 -0.91769 -0.00050507 550.3639016267999 103.79 0.1333 103.75 103.67 103.8 -0.048737 7 5 2 0 0 0 0.81107 1 57640 57640 0 0 1 2866400 + 52576 19008 35513 36315 61079 61079 0.16840822587278126 RKKKKIKT 8 Unmodified _RKKKKIKT_ 0 0 0 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 ENSG00000111845|ENST00000379568|PAK1IP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.55712890625 2 515.366393 1028.71823 NaN NaN NaN NaN NaN NaN NaN 102.6 1 102.56 102.06 103.06 -0.045853 0 0 0 0.97444 1 56990 56990 0 0 1 52577 2836 35514 36316 61080 61080 0.20502287010185682 RKKKKKFK 8 Unmodified _RKKKKKFK_ 0 0 0 ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF ENST00000216797.9_1_14:35871071-35871197:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1290893554688 3 364.257232 1089.74987 NaN NaN NaN NaN NaN NaN NaN 41.522 1 41.522 41.022 42.022 0 0 0 0 0.97444 1 22404 22404 0 0 1 52578 11014 35515 36317 61081 61081 0.2085827976411565 RKKKKKGNKS 10 Unmodified _RKKKKKGNKS_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3967895507812 2 601.396213 1200.77787 0.89084 0.00053575 1.4373 0.00086441 2.3282 0.0014002 601.3967767803572 103.96 0.078262 97.781 97.741 97.819 -6.1757 34 25 2 0 0 0 0.72292 1 69650 69650 0.35063 0 1 6356000 52579 8367 35516 36318 61082 61082 0.18551557953560405 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1081.751831054688 1 1080.74764 1079.74037 0.1611 0.00017411 -0.53954 -0.00058311 -0.37844 -0.000409 1081.7485112241175 76.133 0.16998 75.654 75.594 75.764 -0.47945 8 6 2 0 0 0 0.81107 1 41681 41681 0 0 1 823270 + 52580 18465 35517 36319 61083 61083 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1081.0849609375 1 1080.74764 1079.74037 0.1611 0.00017411 -0.53954 -0.00058311 -0.37844 -0.000409 1081.7485112241175 76.133 0.16998 75.654 75.594 75.764 -0.47945 8 6 2 0 0 0 8.7369 1 41695 41695 0 0 1 823270 + 52581 18465 35517 36319 61084 61084 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9211730957031 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 3.4971 1 1.0152 0.51517 1.5152 -2.482 0 0 0 0.97444 1 1777 1777 0 0 1 + 52582 18465 35517 36319 61085 61085 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208068847656 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 3.8242 1 1.3422 0.84219 1.8422 -2.482 0 0 0 0.97444 1 1939 1939 0 0 1 + 52583 18465 35517 36319 61086 61086 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208679199219 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 4.3461 1 1.8642 1.3642 2.3642 -2.482 0 0 0 0.97444 1 2205 2205 0 0 1 + 52584 18465 35517 36319 61087 61087 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208068847656 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 4.6462 1 2.1642 1.6642 2.6642 -2.482 0 0 0 0.97444 1 2360 2360 0 0 1 + 52585 18465 35517 36319 61088 61088 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208068847656 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 4.9043 1 2.4224 1.9224 2.9224 -2.482 0 0 0 0.97444 1 2489 2489 0 0 1 + 52586 18465 35517 36319 61089 61089 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208679199219 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 5.4651 1 2.9831 2.4831 3.4831 -2.482 0 0 0 0.97444 1 2773 2773 0 0 1 + 52587 18465 35517 36319 61090 61090 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9206237792969 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 6.2437 1 3.7618 3.2618 4.2618 -2.482 0 0 0 0.97444 1 3159 3159 0 0 1 + 52588 18465 35517 36319 61091 61091 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208374023438 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 8.8045 1 6.3226 5.8226 6.8226 -2.482 0 0 0 0.97444 1 4444 4444 0 0 1 + 52589 18465 35517 36319 61092 61092 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9208068847656 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 9.3726 1 6.8907 6.3907 7.3907 -2.482 0 0 0 0.97444 1 4729 4729 0 0 1 + 52590 18465 35517 36319 61093 61093 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.92041015625 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 11.445 1 8.9632 8.4632 9.4632 -2.482 0 0 0 0.97444 1 5762 5762 0 0 1 + 52591 18465 35517 36319 61094 61094 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.9202270507812 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 12.046 1 9.564 9.064 10.064 -2.482 0 0 0 0.97444 1 6075 6075 0 0 1 + 52592 18465 35517 36319 61095 61095 0.20368511478591245 RKKKKKKH 8 Unmodified _RKKKKKKH_ 0 0 0 REV__ENSG00000105849|ENST00000222567|POLR1F REV__ENSG00000105849|ENST00000222567|POLR1F MSMS AL20221201_MKP_PDAC_01 4 360.8588562011719 3 360.920732 1079.74037 NaN NaN NaN NaN NaN NaN NaN 12.305 1 9.8227 9.3227 10.323 -2.482 0 0 0 0.97444 1 6218 6218 0 0 1 + 52593 18465 35517 36319 61096 61096 0.20368511478591245 RKKKKKKKKEE 11 Unmodified _RKKKKKKKKEE_ 0 0 0 REV__ENSG00000072657|ENST00000261180|TRHDE REV__ENSG00000072657|ENST00000261180|TRHDE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 729.485107421875 2 729.485559 1456.95657 NaN NaN NaN NaN NaN NaN NaN 60.962 1 60.962 60.462 61.462 0 0 0 0 0.9435 1 33998 33998 0 0 1 + 52594 17519 35518 36320 61097 61097 0.24636602801774643 RKKKKKKKTI 10 Unmodified _RKKKKKKKTI_ 0 0 0 ENST00000308713.9_3_16:29910378-29910510:-|nuORF ENST00000308713.9_3_16:29910378-29910510:-|nuORF ENST00000308713.9_3_16:29910378-29910510:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 643.4625854492188 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 108.28 1 102.1 101.6 102.6 -6.1757 0 0 0 1.0061 1 72374 72374 0 0 1 52595 11658 35519 36321 61098 61098 0.2771015395253471 RKKKKKKKTI 10 Unmodified _RKKKKKKKTI_ 0 0 0 ENST00000308713.9_3_16:29910378-29910510:-|nuORF ENST00000308713.9_3_16:29910378-29910510:-|nuORF ENST00000308713.9_3_16:29910378-29910510:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 643.4628295898438 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 109.26 1 103.08 102.58 103.58 -6.1757 0 0 0 1.0061 1 72976 72976 0 0 1 52596 11658 35519 36321 61099 61099 0.2771015395253471 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2686462402344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 4.2011 1 4.2011 3.7011 4.7011 0 0 0 0 0.8622 1 2027 2027 0 0 1 52597 8701 35520 36322 61100 61100 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2688293457031 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 4.6688 1 4.6688 4.1688 5.1688 0 0 0 0 0.8622 1 2247 2247 0 0 1 52598 8701 35520 36322 61101 61101 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2683410644531 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 6.6753 1 6.6753 6.1753 7.1753 0 0 0 0 0.8622 1 3204 3204 0 0 1 52599 8701 35520 36322 61102 61102 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2687683105469 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 10.671 1 10.671 10.171 11.171 0 0 0 0 0.8622 1 5064 5064 0 0 1 52600 8701 35520 36322 61103 61103 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2692260742188 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.401 1 14.401 13.901 14.901 0 0 0 0 0.8622 1 6842 6842 0 0 1 52601 8701 35520 36322 61104 61104 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5352478027344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.891 1 14.891 14.391 15.391 0 0 0 0 0.8622 1 7123 7123 0 0 1 52602 8701 35520 36322 61105 61105 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2681274414062 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 15.759 1 15.759 15.259 16.259 0 0 0 0 0.8622 1 7621 7621 0 0 1 52603 8701 35520 36322 61106 61106 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1806335449219 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 16.855 1 16.855 16.355 17.355 0 0 0 0 0.8622 1 8259 8259 0 0 1 52604 8701 35520 36322 61107 61107 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2122802734375 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 21.23 1 21.23 20.73 21.73 0 0 0 0 0.8622 1 10728 10728 0 0 1 52605 8701 35520 36322 61108 61108 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.26806640625 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 21.371 1 21.371 20.871 21.871 0 0 0 0 0.8622 1 10809 10809 0 0 1 52606 8701 35520 36322 61109 61109 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2687377929688 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 72.573 1 72.573 72.073 73.073 0 0 0 0 0.8622 1 40407 40407 0 0 1 52607 8701 35520 36322 61110 61110 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.7432556152344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 77.564 1 77.564 77.064 78.064 0 0 0 0 0.8622 1 43121 43121 0 0 1 52608 8701 35520 36322 61111 61111 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2689514160156 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 0.76021 1 0.68692 0.18692 1.1869 -0.073289 0 0 0 0.8622 1 379 379 0 0 1 52609 8701 35520 36322 61112 61112 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2686462402344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 2.9968 1 2.9247 2.4247 3.4247 -0.072029 0 0 0 0.8622 1 1478 1478 0 0 1 52610 8701 35520 36322 61113 61113 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2687683105469 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 5.5974 1 5.5199 5.0199 6.0199 -0.07749 0 0 0 0.8622 1 2763 2763 0 0 1 52611 8701 35520 36322 61114 61114 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2686767578125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 10.594 1 10.514 10.014 11.014 -0.07938 0 0 0 0.8622 1 5161 5161 0 0 1 52612 8701 35520 36322 61115 61115 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2686157226562 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 11.065 1 10.986 10.486 11.486 -0.07938 0 0 0 0.8622 1 5387 5387 0 0 1 52613 8701 35520 36322 61116 61116 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2688293457031 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 13.054 1 13.006 12.506 13.506 -0.048298 0 0 0 0.8622 1 6335 6335 0 0 1 52614 8701 35520 36322 61117 61117 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2686767578125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.358 1 14.327 13.827 14.827 -0.030868 0 0 0 0.8622 1 6978 6978 0 0 1 52615 8701 35520 36322 61118 61118 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2687072753906 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.589 1 14.558 14.058 15.058 -0.030868 0 0 0 0.8622 1 7108 7108 0 0 1 52616 8701 35520 36322 61119 61119 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.268798828125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 15.001 1 14.986 14.486 15.486 -0.014067 0 0 0 0.8622 1 7336 7336 0 0 1 52617 8701 35520 36322 61120 61120 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2685546875 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 15.813 1 15.799 15.299 16.299 -0.014067 0 0 0 0.8622 1 7778 7778 0 0 1 52618 8701 35520 36322 61121 61121 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2686462402344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 16.355 1 16.356 15.856 16.856 0.0010548 0 0 0 0.8622 1 8060 8060 0 0 1 52619 8701 35520 36322 61122 61122 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2680969238281 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 17.556 1 17.57 17.07 18.07 0.013865 0 0 0 0.8622 1 8738 8738 0 0 1 52620 8701 35520 36322 61123 61123 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2075500488281 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 18.165 1 18.178 17.678 18.678 0.013865 0 0 0 0.8622 1 9087 9087 0 0 1 52621 8701 35520 36322 61124 61124 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2690734863281 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 18.341 1 18.365 17.865 18.865 0.023106 0 0 0 0.8622 1 9190 9190 0 0 1 52622 8701 35520 36322 61125 61125 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2677001953125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 89.708 1 89.206 88.706 89.706 -0.50171 0 0 0 0.8622 1 49043 49043 0 0 1 52623 8701 35520 36322 61126 61126 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.1679077148438 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 92.876 1 92.419 91.919 92.919 -0.4574 0 0 0 0.8622 1 50759 50759 0 0 1 52624 8701 35520 36322 61127 61127 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.268798828125 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 0.92704 1 0.90642 0.40642 1.4064 -0.020623 0 0 0 0.8622 1 477 477 0 0 1 52625 8701 35520 36322 61128 61128 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2687683105469 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 5.5739 1 5.575 5.075 6.075 0.0010915 0 0 0 0.8622 1 2806 2806 0 0 1 52626 8701 35520 36322 61129 61129 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2688903808594 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 5.8089 1 5.81 5.31 6.31 0.0010915 0 0 0 0.8622 1 2924 2924 0 0 1 52627 8701 35520 36322 61130 61130 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2684020996094 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 6.1 1 6.109 5.609 6.609 0.0089307 0 0 0 0.8622 1 3066 3066 0 0 1 52628 8701 35520 36322 61131 61131 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2690124511719 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 9.0343 1 9.0519 8.5519 9.5519 0.017581 0 0 0 0.8622 1 4488 4488 0 0 1 52629 8701 35520 36322 61132 61132 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2685546875 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 10.644 1 10.659 10.159 11.159 0.015327 0 0 0 0.8622 1 5261 5261 0 0 1 52630 8701 35520 36322 61133 61133 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2691955566406 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 11.959 1 11.971 11.471 12.471 0.012355 0 0 0 0.8622 1 5900 5900 0 0 1 52631 8701 35520 36322 61134 61134 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2689514160156 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 12.754 1 12.764 12.264 13.264 0.0096512 0 0 0 0.8622 1 6288 6288 0 0 1 52632 8701 35520 36322 61135 61135 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2686462402344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 13.12 1 13.13 12.63 13.63 0.0096512 0 0 0 0.8622 1 6468 6468 0 0 1 52633 8701 35520 36322 61136 61136 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2689514160156 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 13.396 1 13.406 12.906 13.906 0.0096512 0 0 0 0.86004 1 6607 6607 0.26902 0.26902 1 52634 8701 35520 36322 61137 61137 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2688293457031 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.796 1 14.802 14.302 15.302 0.0057774 0 0 0 0.8622 1 7351 7351 0 0 1 52635 8701 35520 36322 61138 61138 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2691345214844 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 16.169 1 16.174 15.674 16.674 0.0050564 0 0 0 0.8622 1 8095 8095 0 0 1 52636 8701 35520 36322 61139 61139 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 376.9305419921875 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 0.56769 1 -1.9143 -2.4143 -1.4143 -2.482 0 0 0 0.8622 1 300 300 0 0 1 52637 8701 35520 36322 61140 61140 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2690124511719 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 0.87943 1 -1.6025 -2.1025 -1.1025 -2.482 0 0 0 0.8622 1 461 461 0 0 1 52638 8701 35520 36322 61141 61141 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2691345214844 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 2.1011 1 -0.38089 -0.88089 0.11911 -2.482 0 0 0 0.8622 1 1077 1077 0 0 1 52639 8701 35520 36322 61142 61142 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2696228027344 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 2.8506 1 0.36866 -0.13134 0.86866 -2.482 0 0 0 0.8622 1 1455 1455 0 0 1 52640 8701 35520 36322 61143 61143 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2694091796875 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 3.5166 1 1.0347 0.53466 1.5347 -2.482 0 0 0 0.8622 1 1788 1788 0 0 1 52641 8701 35520 36322 61144 61144 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2691650390625 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 3.9948 1 1.5129 1.0129 2.0129 -2.482 0 0 0 0.8622 1 2026 2026 0 0 1 52642 8701 35520 36322 61145 61145 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2684326171875 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 4.8082 1 2.3263 1.8263 2.8263 -2.482 0 0 0 0.8622 1 2441 2441 0 0 1 52643 8701 35520 36322 61146 61146 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.267822265625 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 5.4534 1 2.9715 2.4715 3.4715 -2.482 0 0 0 0.8622 1 2767 2767 0 0 1 52644 8701 35520 36322 61147 61147 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2691040039062 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 5.8685 1 3.3866 2.8866 3.8866 -2.482 0 0 0 0.8622 1 2972 2972 0 0 1 52645 8701 35520 36322 61148 61148 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2695617675781 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 6.3956 1 3.9137 3.4137 4.4137 -2.482 0 0 0 0.8622 1 3235 3235 0 0 1 52646 8701 35520 36322 61149 61149 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2694702148438 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 8.5244 1 6.0425 5.5425 6.5425 -2.482 0 0 0 0.8622 1 4304 4304 0 0 1 52647 8701 35520 36322 61150 61150 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2694702148438 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 10.158 1 7.6757 7.1757 8.1757 -2.482 0 0 0 0.8622 1 5120 5120 0 0 1 52648 8701 35520 36322 61151 61151 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2698669433594 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 13.035 1 10.553 10.053 11.053 -2.482 0 0 0 0.8622 1 6603 6603 0 0 1 52649 8701 35520 36322 61152 61152 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2689819335938 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 13.777 1 11.274 10.774 11.774 -2.5029 0 0 0 0.8622 1 6982 6982 0 0 1 52650 8701 35520 36322 61153 61153 0.22265647447261472 RKKKKSVKK 9 Unmodified _RKKKKSVKK_ 0 0 0 nc|ENSG00000177679|A6NNA2|SRRM3;ENSG00000177679|ENST00000611745|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 nc|ENSG00000177679|A6NNA2|SRRM3 MSMS AL20221201_MKP_PDAC_01 4 377.2696838378906 3 377.267909 1128.7819 NaN NaN NaN NaN NaN NaN NaN 14.08 1 11.577 11.077 12.077 -2.5029 0 0 0 0.8622 1 7136 7136 0 0 1 52651 8701 35520 36322 61154 61154 0.22265647447261472 RKKLHLSIL 9 Unmodified _RKKLHLSIL_ 0 0 0 REV__ENSG00000212124|ENST00000390673|TAS2R19 REV__ENSG00000212124|ENST00000390673|TAS2R19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3723754882812 2 554.371675 1106.7288 1.6213 0.0008988 0.46375 0.00025709 2.085 0.0011559 554.3719400363572 105.94 0.70319 99.768 99.568 100.27 -6.1757 204 97 3 0 0 0 0.61256 2 70955 70955;71061 0.6015 0 1 7662200 + 52652 24266 35521 36323 61155;61156 61155 0.17970269664624539 RKKLLLARFA 10 Unmodified _RKKLLLARFA_ 0 0 0 REV__ENSG00000198146|ENST00000356321|ZNF770 REV__ENSG00000198146|ENST00000356321|ZNF770 MSMS AL20221201_MKP_PDAC_01 4 405.9391784667969 3 405.939792 1214.79755 NaN NaN NaN NaN NaN NaN NaN 14.596 1 12.093 11.593 12.593 -2.5029 0 0 0 1.0024 1 7424 7424 0.13989 0 1 + 52653 23994 35522 36324 61157 61157 0.19873933964322532 RKKLQIVE 8 Unmodified _RKKLQIVE_ 0 0 0 REV__KIF4A|p.E677K|1|0.06|ENSG00000090889|chrX:70376205-70376205|G/A|missense_variant REV__KIF4A|p.E677K|1|0.06|ENSG00000090889|chrX:70376205-70376205|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.328369140625 2 507.326934 1012.63931 1.4753 0.00074845 0.57184 0.00029011 2.0471 0.0010386 507.3274758231283 103.15 0.20512 96.971 96.851 97.056 -6.1757 100 56 2 0 0 0 0.80992 1 69130 69130 0.69038 0 1 12131000 + 52654 29398 35523 36325 61158 61158 0.13350014985246617 RKKMILATK 9 Unmodified _RKKMILATK_ 0 0 0 ENSG00000008197|ENST00000008391|TFAP2D ENSG00000008197|ENST00000008391|TFAP2D ENSG00000008197|ENST00000008391|TFAP2D MSMS AL20221201_MKP_PDAC_01 4 544.8529052734375 2 544.852261 1087.68997 NaN NaN NaN NaN NaN NaN NaN 106.35 1 100.18 99.679 100.68 -6.1757 0 0 0 0.84892 1 71195 71195 1.6526 0 1 52655 378 35524 36326 61159 61159 0.14963221038578922 RKKPRKLIRPH 11 Unmodified _RKKPRKLIRPH_ 0 0 0 REV__nc|ENSG00000105993|O75190-4|DNAJB6 REV__nc|ENSG00000105993|O75190-4|DNAJB6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.973388671875 2 714.972954 1427.93135 NaN NaN NaN NaN NaN NaN NaN 19.308 1 19.308 18.808 19.808 0 0 0 0 0.9435 1 9648 9648 0 0 1 + 52656 29552 35525 36327 61160 61160 0.23450592789868097 RKKREDFWMKP 11 Unmodified _RKKREDFWMKP_ 0 0 0 ENST00000447458.1_1_X:116533503-116533590:+|nuORF ENST00000447458.1_1_X:116533503-116533590:+|nuORF ENST00000447458.1_1_X:116533503-116533590:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3033447265625 3 507.610006 1519.80819 0.38156 0.00019368 1.4348 0.00072829 1.8163 0.00092198 507.9449985656477 38.837 0.26302 38.849 38.718 38.981 0.011452 42 12 5 0 0 0 0.73237 1 20626 20626 1.2148 0.10508 1 22251000 52657 13479 35526 36328 61161 61161 0.06907548556409893 RKKRIPKKPE 10 Unmodified _RKKRIPKKPE_ 0 0 0 ENST00000562687.6_3_16:32769598-32772029:+|nuORF ENST00000562687.6_3_16:32769598-32772029:+|nuORF ENST00000562687.6_3_16:32769598-32772029:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 427.2799377441406 3 427.282218 1278.82482 NaN NaN NaN NaN NaN NaN NaN 101.55 1 95.372 94.872 95.872 -6.1757 0 0 0 1.005 1 68141 68141 0.12286 0.028024 1 52658 15344 35527 36329 61162 61162 0.1965641750468876 RKKRRKRATK 10 Unmodified _RKKRRKRATK_ 0 0 0 ENST00000420660.5_1_2:219134176-219134257:-|nuORF ENST00000420660.5_1_2:219134176-219134257:-|nuORF ENST00000420660.5_1_2:219134176-219134257:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.447998046875 2 664.447103 1326.87965 NaN NaN NaN NaN NaN NaN NaN 92.822 1 92.822 92.322 93.322 0 0 0 0 1.0061 1 51324 51324 0 0 1 52659 13101 35528 36330 61163 61163 0.22928849095978876 RKKRYPYS 8 Unmodified _RKKRYPYS_ 0 0 0 REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF REV__ENST00000293880.9_1_11:57098199-57100416:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.544189453125 3 366.545331 1096.61416 NaN NaN NaN NaN NaN NaN NaN 16.725 1 16.726 16.226 17.226 0.0010548 0 0 0 0.97444 1 8266 8266 0.40072 0.1317 1 + 52660 25252 35529 36331 61164 61164 0.06971960182636394 RKKTTKTKAKK 11 Unmodified _RKKTTKTKAKK_ 0 0 0 REV__ENSG00000118680|ENST00000237500|MYL12B REV__ENSG00000118680|ENST00000237500|MYL12B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.4373168945312 2 659.438078 1316.8616 NaN NaN NaN NaN NaN NaN NaN 15.471 1 15.477 14.977 15.977 0.0057774 0 0 0 0.9435 1 7711 7711 0 0 1 + 52661 19163 35530 36332 61165 61165 0.21584669330582074 RKKVIKPKVLP 11 Unmodified _RKKVIKPKVLP_ 0 0 0 REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.4597778320312 2 653.458282 1304.90201 NaN NaN NaN NaN NaN NaN NaN 88.038 1 87.534 87.034 88.034 -0.50423 0 0 0 0.94301 1 48153 48153 0.35063 0 1 + 52662 20729 35531 36333 61166 61166 0.26175635721006074 RKLGPQRG 8 Unmodified _RKLGPQRG_ 0 0 0 ENSG00000206262|ENST00000383165|FOXL2NB ENSG00000206262|ENST00000383165|FOXL2NB ENSG00000206262|ENST00000383165|FOXL2NB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.9317932128906 2 456.280318 910.546083 NaN NaN NaN NaN NaN NaN NaN 79.574 1 79.574 79.074 80.074 0 0 0 0 0.97444 1 44198 44198 0.69038 0 1 52663 10396 35532 36334 61167 61167 0.08723135322657072 RKLINPKYAL 10 Unmodified _RKLINPKYAL_ 0 0 0 nc|ENSG00000133477|Q8NEG4-2|FAM83F;ENSG00000133477|ENST00000333407|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F nc|ENSG00000133477|Q8NEG4-2|FAM83F MSMS AL20221201_MKP_PDAC_01 4 607.913330078125 2 608.38224 1214.74993 NaN NaN NaN NaN NaN NaN NaN 106.14 1 99.959 99.459 100.46 -6.1757 0 0 0 0.99091 1 71062 71062 1.6526 1.0511 1 52664 4518 35533 36335 61168 61168 0.15114234973475504 RKLKKKAK 8 Unmodified _RKLKKKAK_ 0 0 0 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 MSMS AL20221201_MKP_PDAC_01 4 500.8061828613281 2 500.361111 998.707669 NaN NaN NaN NaN NaN NaN NaN 105.64 1 99.468 98.968 99.968 -6.1757 0 0 0 0.97444 1 70772 70772 0 0 1 52665 6549 35534 36336 61169 61169 0.20826304355739467 RKLKLRQNH 9 Unmodified _RKLKLRQNH_ 0 0 0 ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2515563964844 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 86.686 1 86.686 86.186 87.186 0 0 0 0 0.86031 1 48011 48011 0.23584 0 1 52666 13130 35535 36337 61170 61170 0.14306118122249245 RKLKLRQNH 9 Unmodified _RKLKLRQNH_ 0 0 0 ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF ENST00000423403.1_1_1:61127008-61195314:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2515869140625 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 88.24 1 88.24 87.74 88.74 0 0 0 0 0.86031 1 48846 48846 0.23584 0.076522 1 52667 13130 35535 36337 61171 61171 0.14306118122249245 RKLLKVIPLL 10 Unmodified _RKLLKVIPLL_ 0 0 0 nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2906799316406 3 398.28831 1191.8431 NaN NaN NaN NaN NaN NaN NaN 99.066 1 99.037 98.537 99.537 -0.028282 0 0 0 1.0047 1 55022 55022 0.15932 0.15932 1 52668 8854 35536 36338 61172 61172 0.25485159426716564 RKLLKVIPLL 10 Unmodified _RKLLKVIPLL_ 0 0 0 nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 nc|ENSG00000179709|Q86W28-2|NLRP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2906188964844 3 398.28831 1191.8431 NaN NaN NaN NaN NaN NaN NaN 101.9 1 101.85 101.35 102.35 -0.045853 0 0 0 1.0061 1 56605 56605 0 0 1 52669 8854 35536 36338 61173 61173 0.25485159426716564 RKLPAIAL 8 Unmodified _RKLPAIAL_ 0 0 0 nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENSG00000132382|ENST00000254718|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.299072265625 2 441.300188 880.585822 NaN NaN NaN NaN NaN NaN NaN 6.4795 1 6.3949 5.8949 6.8949 -0.08463 0 0 0 0.97444 1 3199 3199 0.79363 0 1 52670 4400 35537 36339 61174 61174 0.14075262273343014 RKLQQRQPL 9 Unmodified _RKLQQRQPL_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.23974609375 3 389.575401 1165.70437 0.35192 0.0001371 1.1539 0.00044951 1.5058 0.00058661 389.57560576183835 40.638 0.52117 40.643 40.316 40.837 0.0050583 31 24 2 0 0 0 0.21404 1 21614 21614 2.7352 0 1 4421300 52671 7794 35538 36340 61175 61175 0.12815009511086828 RKLTFRYRRVK 11 Unmodified _RKLTFRYRRVK_ 0 0 0 EYA2|p.A381T|1|0.16|ENSG00000064655|chr20:47172810-47172810|G/A|missense_variant EYA2|p.A381T|1|0.16|ENSG00000064655|chr20:47172810-47172810|G/A|missense_variant EYA2|p.A381T|1|0.16|ENSG00000064655|chr20:47172810-47172810|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 761.9755249023438 2 761.975693 1521.93683 1.6356 0.0012463 -0.93123 -0.00070957 0.70433 0.00053668 762.4768657189411 104.95 0.11087 98.77 98.705 98.816 -6.1757 14 7 3 0 0 0 0.73506 1 70237 70237 0.96228 0 1 30318000 52672 15892 35539 36341 61176 61176 0.19674271581652647 RKMKPLLPRV 10 Unmodified _RKMKPLLPRV_ 0 0 0 ENST00000366362.3_1_12:2973410-2973858:-|nuORF;ENST00000536066.1_1_12:2967806-2973707:-|nuORF;nc|ENSG00000111206|Q08050-2|FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1 ENST00000366362.3_1_12:2973410-2973858:-|nuORF ENST00000366362.3_1_12:2973410-2973858:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 619.3976440429688 2 619.39991 1236.78527 NaN NaN NaN NaN NaN NaN NaN 106.95 1 100.77 100.27 101.27 -6.1757 0 0 0 1.0024 1 71561 71561 0.40072 0.050084 1 52673 2766 35540 36342 61177 61177 0.1763457422960073 RKNEFFCKL 9 Unmodified _RKNEFFCKL_ 0 0 0 REV__ENSG00000178033|ENST00000368599|CALHM5 REV__ENSG00000178033|ENST00000368599|CALHM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5475158691406 3 395.546343 1183.6172 1.3874 0.0005488 0.30353 0.00012006 1.691 0.00066886 395.54648860600247 89.237 0.29951 83.061 82.882 83.182 -6.1757 29 16 2 0 0 0 0.38785 1 58879 58879 8.9762 1.8745 1 11368000 + 52674 23018 35541 36343 61178 61178 0.03273467245139727 RKNIEDEY 8 Unmodified _RKNIEDEY_ 0 0 0 REV__ENSG00000170454|ENST00000252245|KRT75;REV__CON__P50446;REV__ENSG00000167768|ENST00000252244|KRT1;REV__ENSG00000186442|ENST00000417996|KRT3;REV__ENSG00000189182|ENST00000341809|KRT77 REV__CON__P50446 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7625732421875 2 533.76182 1065.50909 -0.13487 -7.1988E-05 1.2501 0.00066725 1.1152 0.00059526 533.762990502216 22.078 0.41489 22.078 21.968 22.383 0 44 24 3 0 0 0 0.79887 1 11286 11286 7.2892 0 1 1570100 + + 52675 16833;16839;16845;16847;16885 35542 36344 61179 61179 -0.021046258044179922 RKNKKRRRKRR 11 Unmodified _RKNKKRRRKRR_ 0 0 0 REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 791.5240478515625 2 791.527282 1581.04001 NaN NaN NaN NaN NaN NaN NaN 84.736 1 84.799 84.299 85.299 0.063171 0 0 0 0.9435 1 46897 46897 0 0 1 + 52676 25513 35543 36345 61180 61180 0.2727319681282552 RKNKKRRRKRR 11 Unmodified _RKNKKRRRKRR_ 0 0 0 REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF REV__ENST00000321521.13_1_5:102544671-102544749:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 791.5281982421875 2 791.527282 1581.04001 NaN NaN NaN NaN NaN NaN NaN 94.106 1 94.12 93.62 94.62 0.014244 0 0 0 0.9435 1 52306 52306 0 0 1 + 52677 25513 35543 36345 61181 61181 0.2727319681282552 RKNKRRKIKGK 11 Unmodified _RKNKRRKIKGK_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 706.47509765625 2 706.47586 1410.93717 NaN NaN NaN NaN NaN NaN NaN 103.98 1 103.93 103.43 104.43 -0.048737 0 0 0 0.9435 1 57738 57738 0 0 1 52678 2169 35544 36346 61182 61182 0.24813691301528706 RKNPDLVLM 9 Unmodified _RKNPDLVLM_ 0 0 0 REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3 REV__nc|ENSG00000160584|Q9Y2K2-7|SIK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5436096191406 3 362.54271 1084.6063 1.3133 0.00047613 0.034446 1.2488E-05 1.3477 0.00048861 362.54285129374506 32.734 0.33416 28.877 28.694 29.028 -3.8562 35 17 3 0 0 0 0.14594 1 18627 18627 28.495 11.052 1 16970000 + 52679 21551 35545 36347 61183 61183 0.06738064870864946 RKNRRAMKAKY 11 Unmodified _RKNRRAMKAKY_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 711.4166259765625 2 711.417154 1420.81975 NaN NaN NaN NaN NaN NaN NaN 30.473 1 30.503 30.003 31.003 0.030106 0 0 0 0.94307 1 15934 15934 0.30703 0 1 + 52680 18439 35546 36348 61184 61184 0.12617790370427429 RKPFLESLL 9 Unmodified _RKPFLESLL_ 0 0 0 ENST00000296161.8_1_3:122292171-122292468:+|nuORF ENST00000296161.8_1_3:122292171-122292468:+|nuORF ENST00000296161.8_1_3:122292171-122292468:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5599365234375 3 368.225486 1101.65463 1.6136 0.00059418 -0.78048 -0.00028739 0.83314 0.00030678 368.2255545995857 80.051 0.3447 73.876 73.659 74.004 -6.1757 52 20 4 0 0 0 0.2546 1 52547 52547 19.362 0 1 19123000 52681 11505 35547 36349 61185 61185 0.10786881782428281 RKPKKKNPNK 10 Unmodified _RKPKKKNPNK_ 0 0 0 ENSG00000164778|ENST00000297375|EN2 ENSG00000164778|ENST00000297375|EN2 ENSG00000164778|ENST00000297375|EN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2662048339844 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 97.138 1 96.895 96.395 97.395 -0.24277 0 0 0 1.0024 1 53045 53045 0.13989 0 1 52682 7245 35548 36350 61186 61186 0.1689555795353499 RKPLGVETKM 10 Unmodified _RKPLGVETKM_ 0 0 0 nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL nc|ENSG00000136155|O95171-3|SCEL nc|ENSG00000136155|O95171-3|SCEL MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8938293457031 3 386.893631 1157.65906 0.87022 0.00033668 0.080045 3.0969E-05 0.95026 0.00036765 386.8937829011529 36.486 0.56227 32.293 32.018 32.58 -4.1928 65 34 2 0 0 0 0.48505 1 21401 21401 10.899 0 1 83300000 52683 4795 35549 36351 61187 61187 0.08654022933660599 RKPLLLILL 9 Unmodified _RKPLLLILL_ 0 0 0 ENST00000452532.1_1_X:55934878-55934956:+|nuORF ENST00000452532.1_1_X:55934878-55934956:+|nuORF ENST00000452532.1_1_X:55934878-55934956:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2623291015625 3 360.261872 1077.76379 NaN NaN NaN NaN NaN NaN NaN 103.51 1 103.47 102.97 103.97 -0.047928 0 0 0 0.8622 1 57488 57488 0 0 1 52684 13544 35550 36352 61188 61188 0.2280151247257436 RKPNLKRAF 9 Unmodified _RKPNLKRAF_ 0 0 0 REV__nc|ENSG00000107815|Q96RR1-3|TWNK REV__nc|ENSG00000107815|Q96RR1-3|TWNK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.7576599121094 3 377.236608 1128.688 2.8249 0.0010657 0.24524 9.2515E-05 3.0701 0.0011582 377.2365994404778 62.717 0.29762 56.542 56.378 56.676 -6.1757 20 14 2 0 0 0 0.21767 1 40375 40375 1.1933 0 1 5752500 + 52685 18576 35551 36353 61189 61189 0.12879928344977998 RKQGKLPL 8 Unmodified _RKQGKLPL_ 0 0 0 REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.3087158203125 2 470.308544 938.602535 -0.70754 -0.00033276 0.61226 0.00028795 -0.095281 -4.4811E-05 470.3088232800065 103.13 0.37668 103.08 102.88 103.26 -0.047928 30 15 2 0 0 0 0.80992 2 57231 57231;57327 0.69038 0 1 14649000 + 52686 18459 35552 36354 61190;61191 61190 0.13077763159321876 RKQGKLPL 8 Unmodified _RKQGKLPL_ 0 0 0 REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.308544 938.602535 0.34589 0.00016267 0.63164 0.00029706 0.97753 0.00045974 470.30880608451275 103.14 0.28635 103.04 102.9 103.18 -0.10458 -0.023509 1.2917E-05 NaN 0.69038 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 270750 + 52687 18459 35552 36354 0.13077763159321876 RKQGKLPL 8 Unmodified _RKQGKLPL_ 0 0 0 REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF REV__ENST00000439832.5_1_7:89984428-90003631:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.308544 938.602535 -0.70754 -0.00033276 0.61226 0.00028795 -0.095281 -4.4811E-05 470.3088232800065 103.13 0.37668 103.08 102.88 103.26 -0.047928 0.023509 -5.307E-06 NaN 0.69038 30 15 2 NaN NaN NaN NaN 0 NaN NaN 0 14649000 + 52688 18459 35552 36354 0.13077763159321876 RKQHWRRFTEW 11 Unmodified _RKQHWRRFTEW_ 0 0 0 REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 815.4277954101562 2 815.429107 1628.84366 NaN NaN NaN NaN NaN NaN NaN 81.931 1 75.755 75.255 76.255 -6.1757 0 0 0 0.9435 1 53800 53800 0 0 1 + 52689 27440 35553 36355 61192 61192 0.05439347128412919 RKQIKKKKKRK 11 Unmodified _RKQIKKKKKRK_ 0 0 0 REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF REV__ENST00000359543.7_1_16:10626568-10626661:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 735.016357421875 2 735.017361 1468.02017 NaN NaN NaN NaN NaN NaN NaN 17.321 1 17.326 16.826 17.826 0.0050564 0 0 0 0.9435 1 8732 8732 0 0 1 + 52690 25893 35554 36356 61193 61193 0.3048800802951064 RKQLTFDSFL 10 Unmodified _RKQLTFDSFL_ 0 0 0 REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF REV__ENST00000429248.1_1_7:56707156-56718384:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8453979492188 2 627.845687 1253.67682 NaN NaN NaN NaN NaN NaN NaN 18.164 1 18.17 17.67 18.67 0.0060463 0 0 0 0.99091 1 9193 9193 1.6526 0 1 + 52691 26948 35555 36357 61194 61194 0.060130614601803245 RKQNPHSENE 10 Unmodified _RKQNPHSENE_ 0 0 0 ENSG00000130348|ENST00000369046|QRSL1;nc|ENSG00000130348|Q9H0R6-2|QRSL1 ENSG00000130348|ENST00000369046|QRSL1 ENSG00000130348|ENST00000369046|QRSL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5335998535156 3 413.53393 1237.57996 NaN NaN NaN NaN NaN NaN NaN 13.139 1 13.149 12.649 13.649 0.0096512 0 0 0 1.0024 1 6477 6477 0.13989 0 1 52692 4207 35556 36358 61195 61195 -0.0293253276690848 RKQPQELLL 9 Unmodified _RKQPQELLL_ 0 0 0 ENST00000477714.1_1_22:45706022-45724091:+|nuORF;ENSG00000100376|ENST00000441876|FAM118A ENST00000477714.1_1_22:45706022-45724091:+|nuORF ENST00000477714.1_1_22:45706022-45724091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.564208984375 3 375.564391 1123.67134 1.427 0.00053592 -0.93561 -0.00035138 0.49137 0.00018454 375.56400131659854 38.154 0.38213 33.785 33.597 33.98 -4.3689 51 22 3 0 0 0 0.098164 1 22405 22405 33.445 4.9504 1 19530000 52693 1809 35557 36359 61196 61196 0.11445382668398452 RKQQKDSL 8 Unmodified _RKQQKDSL_ 0 0 0 REV__ENSG00000140575|ENST00000268182|IQGAP1 REV__ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7885131835938 2 501.788173 1001.56179 0.43102 0.00021628 -0.89568 -0.00044944 -0.46467 -0.00023317 501.7873898085759 26.38 0.51931 23.429 23.078 23.597 -2.9511 56 28 3 0 0 0 0.52622 1 14575 14575 32.305 1.6689 1 44224000 + 52694 20486 35558 36360 61197 61197 0.06107377049045226 RKQRLWKWWKL 11 Unmodified _RKQRLWKWWKL_ 0 0 0 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 814.4859008789062 2 814.488437 1626.96232 NaN NaN NaN NaN NaN NaN NaN 72.088 1 65.912 65.412 66.412 -6.1757 0 0 0 0.94301 1 47174 47174 0.35063 0.35063 1 52695 79 35559 36361 61198 61198 0.1739174610409009 RKQVGTLLL 9 Unmodified _RKQVGTLLL_ 0 0 0 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.3350830078125 2 514.334759 1026.65496 0.26251 0.00013502 0.32426 0.00016678 0.58677 0.0003018 514.3352355595629 103.25 0.27846 103.15 103.03 103.31 -0.10458 20 13 2 0 0 0 0.62242 1 56295 56295 0 0 1 165800 + 52696 19575 35560 36362 61199 61199 0.14270301502301663 RKQVGTLLL 9 Unmodified _RKQVGTLLL_ 0 0 0 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3345336914062 2 514.334759 1026.65496 -0.40657 -0.00020911 0.641 0.00032969 0.23443 0.00012057 514.3352466625361 103.26 0.44672 103.21 102.98 103.43 -0.04792 36 18 3 0 0 0 0.62242 1 57431 57431 0 0 1 2248300 + 52697 19575 35560 36362 61200 61200 0.14270301502301663 RKQVGTLLL 9 Unmodified _RKQVGTLLL_ 0 0 0 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.334759 1026.65496 0.26251 0.00013502 0.32426 0.00016678 0.58677 0.0003018 514.3352355595629 103.25 0.27846 103.15 103.03 103.31 -0.10458 -0.031034 -0.00021304 NaN 0 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 165800 + 52698 19575 35560 36362 0.14270301502301663 RKQVGTLLL 9 Unmodified _RKQVGTLLL_ 0 0 0 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 REV__nc|ENSG00000127325|Q8N1M1-1|BEST3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.334759 1026.65496 -0.40657 -0.00020911 0.641 0.00032969 0.23443 0.00012057 514.3352466625361 103.26 0.44672 103.21 102.98 103.43 -0.04792 0.031034 0.00011278 NaN 0 36 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2248300 + 52699 19575 35560 36362 0.14270301502301663 RKQVKIILLL 10 Unmodified _RKQVKIILLL_ 0 0 0 ENST00000599799.1_1_19:35820106-35820811:+|nuORF ENST00000599799.1_1_19:35820106-35820811:+|nuORF ENST00000599799.1_1_19:35820106-35820811:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.4332885742188 2 612.431733 1222.84891 NaN NaN NaN NaN NaN NaN NaN 65.742 1 65.742 65.242 66.242 0 0 0 0 0.90096 1 36666 36666 7.9102 0 1 52700 15795 35561 36363 61201 61201 0.24640257938381183 RKQYEEWL 8 Unmodified _RKQYEEWL_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2957763671875 2 576.29583 1150.57711 NaN NaN NaN NaN NaN NaN NaN 94.392 1 94.392 93.892 94.892 0 0 0 0 0.97444 1 52177 52177 0.69038 0 1 52701 778 35562 36364 61202 61202 0.007842438462375867 RKRASTIR 8 Unmodified _RKRASTIR_ 0 0 0 REV__ENSG00000177679|ENST00000611745|SRRM3;REV__ENSG00000139767|ENST00000267260|SRRM4 REV__ENSG00000177679|ENST00000611745|SRRM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.31494140625 2 494.312149 986.609745 1.5945 0.0007882 3.6983 0.0018281 5.2928 0.0026163 494.3144231086271 103.44 0.061523 97.264 97.238 97.299 -6.1757 5 4 2 0 0 0 0.80232 1 69364 69364 5.2307 0 1 7965100 + 52702 22997;20431 35563 36365 61203 61203 0.11590495759764963 RKRGRQTYTRY 11 Unmodified _RKRGRQTYTRY_ 0 0 0 ENSG00000260027|ENST00000239165|HOXB7;ENST00000567101.2_1_17:46685206-46710927:-|nuORF;ENSG00000122592|ENST00000242159|HOXA7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.612548828125 3 495.611285 1483.81203 0.13352 6.6174E-05 0.038204 1.8934E-05 0.17172 8.5109E-05 495.6111850784886 37.766 0.24943 37.783 37.673 37.922 0.01704 19 11 2 0 0 0 0.72981 1 20071 20071 1.4551 0.12547 1 2226600 52703 10826 35564 36366 61204 61204 0.08947354374504357 RKRIRYRFRRF 11 Unmodified _RKRIRYRFRRF_ 0 0 0 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 ENSG00000096968|ENST00000381652|JAK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.5039672851562 2 827.505484 1652.99641 NaN NaN NaN NaN NaN NaN NaN 107.7 1 107.65 107.15 108.15 -0.047607 0 0 0 0.9435 1 59662 59662 0 0 1 52704 1678 35565 36367 61205 61205 0.19603587315691584 RKRKAVTKRAR 11 Unmodified _RKRKAVTKRAR_ 0 0 0 ENSG00000163530|ENST00000478945|DPPA2 ENSG00000163530|ENST00000478945|DPPA2 ENSG00000163530|ENST00000478945|DPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.9535522460938 2 685.452385 1368.89022 -0.43372 -0.0002973 0.042999 2.9474E-05 -0.39072 -0.00026782 685.4516867783225 103.52 0.11238 103.47 103.4 103.52 -0.047928 6 4 2 0 0 0 0.7453 1 57507 57507 0 0 1 812240 52705 7011 35566 36368 61206 61206 0.22052831750397672 RKRKHKPKKL 10 Unmodified _RKRKHKPKKL_ 0 0 0 REV__ENSG00000152217|ENST00000649279|SETBP1 REV__ENSG00000152217|ENST00000649279|SETBP1 MSMS AL20221201_MKP_PDAC_01 4 440.3000793457031 3 440.301724 1317.88334 NaN NaN NaN NaN NaN NaN NaN 105.9 1 99.721 99.221 100.22 -6.1757 0 0 0 1.0048 1 70921 70921 0.13989 0 1 + 52706 21107 35567 36369 61207 61207 0.23711518869822612 RKRKKEEKKK 10 Unmodified _RKRKKEEKKK_ 0 0 0 REV__ENST00000394767.2_1_4:105393230-105393449:-|nuORF REV__ENST00000394767.2_1_4:105393230-105393449:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.44140625 2 679.441152 1356.86775 NaN NaN NaN NaN NaN NaN NaN 104.28 1 104.23 103.73 104.73 -0.048737 0 0 0 1.0029 1 57895 57895 0.35063 0 1 + 52707 26454 35568 36370 61208 61208 0.20359187562098668 RKRKKEEKKK 10 Unmodified _RKRKKEEKKK_ 0 0 0 REV__ENST00000394767.2_1_4:105393230-105393449:-|nuORF REV__ENST00000394767.2_1_4:105393230-105393449:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.4428100585938 2 679.441152 1356.86775 1.7615 0.0011968 2.0083 0.0013645 3.7697 0.0025613 679.9427409362723 104.6 0.097069 98.426 98.36 98.457 -6.1757 7 4 2 0 0 0 0.71276 1 70048 70048 1.4819 0 1 8787600 + 52708 26454 35568 36370 61209 61209 0.20359187562098668 RKRKKEKKKFG 11 Unmodified _RKRKKEKKKFG_ 0 0 0 REV__ENST00000485126.1_1_3:85008763-85009494:+|nuORF REV__ENST00000485126.1_1_3:85008763-85009494:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.31298828125 3 478.312288 1431.91504 NaN NaN NaN NaN NaN NaN NaN 108.91 1 102.73 102.23 103.23 -6.1757 0 0 0 0.94337 1 72762 72762 0.094841 0 1 + 52709 27774 35569 36371 61210 61210 0.21635466833095052 RKRKKKPKLVR 11 Unmodified _RKRKKKPKLVR_ 0 0 0 ENST00000216185.6_1_22:36863238-36863490:-|nuORF ENST00000216185.6_1_22:36863238-36863490:-|nuORF ENST00000216185.6_1_22:36863238-36863490:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 719.0067749023438 2 719.004254 1435.99395 NaN NaN NaN NaN NaN NaN NaN 16.864 1 16.869 16.369 17.369 0.0050564 0 0 0 0.9435 1 8476 8476 0 0 1 52710 11006 35570 36372 61211 61211 0.29339738858061537 RKRKPVAT 8 Unmodified _RKRKPVAT_ 0 0 0 nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L;ENSG00000089916|ENST00000261530|GPATCH2L;ENST00000554375.5_1_14:76644623-76668191:+|nuORF;ENST00000553588.1_3_14:76647133-76662365:+|nuORF nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2944641113281 2 478.311618 954.608683 1.6414 0.00078511 0.63002 0.00030135 2.2714 0.0010865 478.31292997676275 109.91 0.94933 103.74 102.87 103.82 -6.1757 406 209 3 0 0 0 0.80992 1 72862 72862 0.69038 0 1 4378400 52711 1542 35571 36373 61212 61212 0.12956281390847835 RKRLKRLHS 9 Unmodified _RKRLKRLHS_ 0 0 0 REV__ENSG00000130203|ENST00000252486|APOE REV__ENSG00000130203|ENST00000252486|APOE MSMS AL20221201_MKP_PDAC_01 4 597.390380859375 2 597.388722 1192.76289 NaN NaN NaN NaN NaN NaN NaN 109.21 1 103.03 102.53 103.53 -6.1757 0 0 0 0.85737 1 72944 72944 0.6015 0 1 + 52712 19705 35572 36374 61213 61213 0.1742211087623673 RKRLKRLHS 9 Unmodified _RKRLKRLHS_ 0 0 0 REV__ENSG00000130203|ENST00000252486|APOE REV__ENSG00000130203|ENST00000252486|APOE MSMS AL20221201_MKP_PDAC_01 4 597.3919677734375 2 597.388722 1192.76289 NaN NaN NaN NaN NaN NaN NaN 109.38 1 103.2 102.7 103.7 -6.1757 0 0 0 0.85737 1 73049 73049 0.6015 0 1 + 52713 19705 35572 36374 61214 61214 0.1742211087623673 RKRLLILSSI 10 Unmodified _RKRLLILSSI_ 0 0 0 REV__ENST00000216554.7_1_14:103805174-103805581:+|nuORF REV__ENST00000216554.7_1_14:103805174-103805581:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.9036254882812 2 599.90334 1197.79213 NaN NaN NaN NaN NaN NaN NaN 87.139 1 87.139 86.639 87.639 0 0 0 0 1.0061 1 48258 48258 0 0 1 + 52714 24743 35573 36375 61215 61215 0.2011421038187109 RKRMRRRWQAR 11 Unmodified _RKRMRRRWQAR_ 0 0 0 REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.4727783203125 2 800.471118 1598.92768 NaN NaN NaN NaN NaN NaN NaN 103.39 1 97.219 96.719 97.719 -6.1757 0 0 0 0.9435 1 69325 69325 0 0 1 + 52715 26402 35574 36376 61216 61216 0.1521759974436918 RKRMRRRWQAR 11 Unmodified _RKRMRRRWQAR_ 0 0 0 REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.4717407226562 2 800.471118 1598.92768 NaN NaN NaN NaN NaN NaN NaN 106.56 1 100.39 99.888 100.89 -6.1757 0 0 0 0.9435 1 71326 71326 0 0 1 + 52716 26402 35574 36376 61217 61217 0.1521759974436918 RKRMRRRWQAR 11 Unmodified _RKRMRRRWQAR_ 0 0 0 REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.4727172851562 2 800.471118 1598.92768 NaN NaN NaN NaN NaN NaN NaN 106.95 1 100.78 100.28 101.28 -6.1757 0 0 0 0.9435 1 71566 71566 0 0 1 + 52717 26402 35574 36376 61218 61218 0.1521759974436918 RKRMRRRWQAR 11 Unmodified _RKRMRRRWQAR_ 0 0 0 REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF REV__ENST00000392813.8_1_3:158519897-158520086:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.471435546875 2 800.471118 1598.92768 NaN NaN NaN NaN NaN NaN NaN 107.87 1 101.69 101.19 102.19 -6.1757 0 0 0 0.9435 1 72119 72119 0 0 1 + 52718 26402 35574 36376 61219 61219 0.1521759974436918 RKRPARSKL 9 Unmodified _RKRPARSKL_ 0 0 0 REV__LTR2C_dup54|chr2:231400712-231401206:+|4.209818835022325|0.310476164059117|3.76|179.0|22|1|anti-sense REV__LTR2C_dup54|chr2:231400712-231401206:+|4.209818835022325|0.310476164059117|3.76|179.0|22|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3633422851562 2 556.362173 1110.70979 1.6651 0.00092642 2.2365 0.0012443 3.9017 0.0021707 556.3633260056882 104.52 0.16292 98.343 98.313 98.476 -6.1757 12 9 2 0 0 0 0.55775 1 70024 70024 3.9444 0.66309 1 4803900 + 52719 29454 35575 36377 61220 61220 0.15886733093543626 RKRQSKPGF 9 Unmodified _RKRQSKPGF_ 0 0 0 REV__ENSG00000134697|ENST00000373062|GNL2 REV__ENSG00000134697|ENST00000373062|GNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3252563476562 2 552.325257 1102.63596 1.4171 0.00078272 -2.9001 -0.0016018 -1.483 -0.00081909 552.3236627746849 100.43 0.18974 100.39 100.29 100.48 -0.036301 13 6 3 0 0 0 0.58466 1 55789 55789 2.3027 0 1 5589300 + 52720 20002 35576 36378 61221 61221 0.08874764931215395 RKRRKKRGH 9 Unmodified _RKRRKKRGH_ 0 0 0 nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140;ENST00000476126.1_1_2:231134613-231152782:+|nuORF nc|ENSG00000079263|Q13342-3|SP140 nc|ENSG00000079263|Q13342-3|SP140 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3978271484375 2 611.397413 1220.78027 NaN NaN NaN NaN NaN NaN NaN 15.177 1 15.182 14.682 15.682 0.0057774 0 0 0 0.8622 1 7554 7554 0 0 1 52721 1268 35577 36379 61222 61222 0.17871451201881428 RKRRKLRFVWI 11 Unmodified _RKRRKLRFVWI_ 0 0 0 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 MSMS AL20221201_MKP_PDAC_01 4 519.7681274414062 3 520.003678 1556.9892 NaN NaN NaN NaN NaN NaN NaN 56.933 1 50.956 50.456 51.456 -5.9769 0 0 0 0.94337 1 36373 36373 0.094841 0 1 + 52722 22554 35578 36380 61223 61223 0.232988547153127 RKRRKRRRRRK 11 Unmodified _RKRRKRRRRRK_ 0 0 0 ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.56005859375 2 826.559447 1651.10434 NaN NaN NaN NaN NaN NaN NaN 79.79 1 79.845 79.345 80.345 0.05497 0 0 0 0.9435 1 44091 44091 0 0 1 52723 14229 35579 36381 61224 61224 0.30483396689623987 RKRRRKRCRRR 11 Unmodified _RKRRRKRCRRR_ 0 0 0 ENST00000319296.9_1_16:30419378-30419444:+|nuORF ENST00000319296.9_1_16:30419378-30419444:+|nuORF ENST00000319296.9_1_16:30419378-30419444:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.0133666992188 3 543.013464 1626.01856 NaN NaN NaN NaN NaN NaN NaN 18.375 1 15.754 15.254 16.254 -2.6215 0 0 0 0.9435 1 9674 9674 0 0 1 52724 11756 35580 36382 61225 61225 0.23059488512490134 RKRVLSPEEL 10 Unmodified _RKRVLSPEEL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000131778|Q86WJ1-4|CHD1L;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-2|CHD1L;ENSG00000131778|ENST00000369258|CHD1L ADAM15-CHD1L|1|fusion;nc|ENSG00000131778|Q86WJ1-3|CHD1L ADAM15-CHD1L|1|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.4954833984375 3 409.5787 1225.71427 -0.77072 -0.00031567 0.85476 0.00035009 0.08404 3.4421E-05 409.91311900656785 27.743 0.2073 27.743 27.617 27.825 0 18 9 3 0 0 0 0.23895 1 14325 14325 4.1895 0 1 1946200 52725 9;4349 35581 36383 61226 61226 0.11044152725798995 RKRVRKKLEG 10 Unmodified _RKRVRKKLEG_ 0 0 0 ENST00000262644.8_1_8:57872809-57872962:-|nuORF ENST00000262644.8_1_8:57872809-57872962:-|nuORF ENST00000262644.8_1_8:57872809-57872962:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.413818359375 2 635.414937 1268.81532 NaN NaN NaN NaN NaN NaN NaN 104.3 1 104.26 103.76 104.76 -0.048737 0 0 0 1.0024 1 57911 57911 0.40072 0 1 52726 11271 35582 36384 61227 61227 0.19166649219187093 RKRWLRKPRP 10 Unmodified _RKRWLRKPRP_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000562609.2_1_16:27472673-27474977:-|nuORF;ENST00000564747.1_1_16:27472673-27473321:-|nuORF nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.9442749023438 2 696.944196 1391.87384 NaN NaN NaN NaN NaN NaN NaN 20.433 1 20.444 19.944 20.944 0.010553 0 0 0 1.0061 1 10421 10421 0 0 1 52727 1209 35583 36385 61228 61228 0.19357750584299538 RKRWTFQFKRF 11 Unmodified _RKRWTFQFKRF_ 0 0 0 ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4544677734375 2 800.454594 1598.89463 NaN NaN NaN NaN NaN NaN NaN 103.76 1 103.71 103.21 104.21 -0.048737 0 0 0 0.9435 1 57621 57621 0 0 1 52728 13422 35584 36386 61229 61229 0.11914296173267758 RKRWTFQFKRF 11 Unmodified _RKRWTFQFKRF_ 0 0 0 ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 800.453125 2 800.454594 1598.89463 NaN NaN NaN NaN NaN NaN NaN 61.675 1 55.499 54.999 55.999 -6.1757 0 0 0 0.94301 1 39740 39740 0.35063 0.043601 1 52729 13422 35584 36386 61230 61230 0.11914296173267758 RKRYRPRRRKQ 11 Unmodified _RKRYRPRRRKQ_ 0 0 0 REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.495849609375 2 800.49819 1598.98183 NaN NaN NaN NaN NaN NaN NaN 69.131 1 68.65 68.15 69.15 -0.48071 0 0 0 0.9435 1 37790 37790 0 0 1 + 52730 22002 35585 36387 61231 61231 0.20629515167547652 RKSHGPFYRIY 11 Unmodified _RKSHGPFYRIY_ 0 0 0 REV__ENST00000487402.1_1_3:52291508-52301068:-|nuORF REV__ENST00000487402.1_1_3:52291508-52301068:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 712.3845825195312 2 712.383303 1422.75205 0.41093 0.00029274 0.3781 0.00026935 0.78903 0.00056209 712.3837665325852 74.499 0.36082 74.545 74.321 74.682 0.045967 27 15 2 0 0 0 0.66568 1 41032 41032 5.7319 0 1 4092900 + 52731 21866 35586 36388 61232 61232 0.05758663711276313 RKSQMYANASG 11 Unmodified _RKSQMYANASG_ 0 0 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.7919921875 2 606.793129 1211.5717 0.0066643 4.0439E-06 0.071597 4.3445E-05 0.078261 4.7488E-05 606.7934121226485 29.977 0.16979 30.007 29.921 30.091 0.030106 13 6 3 0 0 0 0.62338 1 15676 15676 10.151 0.76745 1 1310100 + 52732 23418 35587 36389 61233 61233 -0.025618030078931042 RKSQMYANASG 11 Unmodified _RKSQMYANASG_ 0 0 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 606.793129 1211.5717 0.6388 0.00038762 -1.5562 -0.00094429 -0.9174 -0.00055667 606.7921670384418 30.2 0.22769 30.119 30.027 30.255 -0.080429 0.055821 -0.00047518 NaN 10.151 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1781300 + 52733 23418 35587 36389 -0.025618030078931042 RKSQMYANASG 11 Unmodified _RKSQMYANASG_ 0 0 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.793129 1211.5717 0.0066643 4.0439E-06 0.071597 4.3445E-05 0.078261 4.7488E-05 606.7934121226485 29.977 0.16979 30.007 29.921 30.091 0.030106 -0.055821 0.0015003 NaN 10.151 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1310100 + 52734 23418 35587 36389 -0.025618030078931042 RKSSGLLR 8 Unmodified _RKSSGLLR_ 0 0 0 REV__ENST00000555401.5_1_14:88852083-88883103:+|nuORF REV__ENST00000555401.5_1_14:88852083-88883103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7884216308594 2 458.787976 915.561398 0.53434 0.00024515 0.30115 0.00013816 0.83549 0.00038331 458.78809007429464 81.918 0.38487 81.918 81.782 82.167 0 35 21 2 0 0 0 0.80992 1 45543 45543 0.69038 0 1 1120800 + 52735 28768 35588 36390 61234 61234 0.10024002119871511 RKTAAALFHP 10 Unmodified _RKTAAALFHP_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.295654296875 2 556.322183 1110.62981 0.48033 0.00026722 -0.99327 -0.00055258 -0.51294 -0.00028536 556.823227870896 39.216 0.19449 39.227 39.129 39.323 0.011452 12 8 2 0 0 0 0.23257 1 20895 20895 11.495 2.7493 1 1088700 + 52736 19005 35589 36391 61235 61235 0.07892246699680072 RKTKAAKG 8 Unmodified _RKTKAAKG_ 0 0 0 ENST00000265362.8_1_7:83823892-83823976:-|nuORF ENST00000265362.8_1_7:83823892-83823976:-|nuORF ENST00000265362.8_1_7:83823892-83823976:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2785949707031 2 430.277244 858.539935 1.2829 0.00055198 0.45425 0.00019545 1.7371 0.00074744 430.27735335801833 94.354 1.3022 88.179 87.57 88.872 -6.1757 121 75 2 0 0 0 0.80722 1 62171 62171 2.3027 0.24298 1 24469000 52737 11330 35590 36392 61236 61236 0.10500617091122422 RKTKAAKG 8 Unmodified _RKTKAAKG_ 0 0 0 ENST00000265362.8_1_7:83823892-83823976:-|nuORF ENST00000265362.8_1_7:83823892-83823976:-|nuORF ENST00000265362.8_1_7:83823892-83823976:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2775268554688 2 430.277244 858.539935 NaN NaN NaN NaN NaN NaN NaN 93.478 1 87.303 86.803 87.803 -6.1757 0 0 0 0.97444 1 61873 61873 5.2307 0.47466 1 52738 11330 35590 36392 61237 61237 0.10500617091122422 RKTKIPVW 8 Unmodified _RKTKIPVW_ 0 0 0 ENST00000505113.5_1_5:424040-432966:+|nuORF;ENST00000316418.9_1_5:424040-432966:+|nuORF ENST00000505113.5_1_5:424040-432966:+|nuORF ENST00000505113.5_1_5:424040-432966:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3250122070312 2 514.324194 1026.63383 1.489 0.00076583 -0.87566 -0.00045037 0.61335 0.00031546 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.80975 2 72964 72964;73073 0.79363 0.39292 1 4939700 52739 11737 35591 36393 61238;61239 61238 0.1215833619339719 RKTRLFLL 8 Unmodified _RKTRLFLL_ 0 0 0 REV__ENST00000373652.7_1_2:230875503-230875701:+|nuORF REV__ENST00000373652.7_1_2:230875503-230875701:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.845458984375 2 523.845294 1045.67603 1.6428 0.00086057 -1.4825 -0.00077659 0.16032 8.3985E-05 523.8442456346918 104.85 0.11008 98.678 98.609 98.719 -6.1757 15 9 2 0 0 0 0.80624 1 70181 70181 2.8892 2.0956 1 7429600 + 52740 26156 35592 36394 61240 61240 0.15502311601790097 RKTRSRGSQF 10 Unmodified _RKTRSRGSQF_ 0 0 0 REV__ENSG00000081138|ENST00000397968|CDH7 REV__ENSG00000081138|ENST00000397968|CDH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3432006835938 2 611.841802 1221.66905 0.64998 0.00039768 1.759 0.0010762 2.409 0.0014739 612.3440971083775 101.81 0.33982 95.636 95.6 95.939 -6.1757 34 18 2 0 0 0 0.69377 1 68353 68353 3.5965 1.9439 1 17979000 + 52741 17683 35593 36395 61241 61241 0.06708346983282354 RKTTLRPK 8 Unmodified _RKTTLRPK_ 0 0 0 REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF REV__ENST00000413663.1_1_3:43526466-43526670:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3265380859375 2 500.324725 998.634898 NaN NaN NaN NaN NaN NaN NaN 101 1 100.96 100.46 101.46 -0.04216 0 0 0 0.97444 1 56110 56110 0.69038 0 1 + 52742 26737 35594 36396 61242 61242 0.1355255056232636 RKVENLMFL 9 Unmodified _RKVENLMFL_ 0 0 0 REV__nc|ENSG00000113889|P01042-3|KNG1 REV__nc|ENSG00000113889|P01042-3|KNG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8885803222656 3 383.886476 1148.6376 NaN NaN NaN NaN NaN NaN NaN 16.389 1 16.394 15.894 16.894 0.0050564 0 0 0 0.84892 1 8216 8216 0.86438 0.35842 1 + 52743 29582 35595 36397 61243 61243 0.06922637904972362 RKVGPTWG 8 Unmodified _RKVGPTWG_ 0 0 0 REV__nc|ENSG00000005381|P05164-3|MPO REV__nc|ENSG00000005381|P05164-3|MPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7568969726562 2 450.756144 899.497735 0.78601 0.0003543 1.083 0.00048817 1.869 0.00084247 450.75661076521135 69.975 0.63216 70.006 69.826 70.458 0.030914 51 31 2 0 0 0 0.80676 1 38496 38496 2.5775 1.7838 1 4218800 + 52744 16967 35596 36398 61244 61244 0.0439664168274021 RKVILFTFK 9 Unmodified _RKVILFTFK_ 0 0 0 ENST00000367651.3_1_6:139693526-139693751:-|nuORF ENST00000367651.3_1_6:139693526-139693751:-|nuORF ENST00000367651.3_1_6:139693526-139693751:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5814208984375 3 384.581493 1150.72265 0.0018031 6.9343E-07 0.66266 0.00025485 0.66446 0.00025554 384.5817571428808 33.518 0.35528 33.547 33.317 33.672 0.028934 41 15 3 0 0 0 0.59532 1 17610 17610 0.86438 0.16671 1 10557000 52745 12248 35597 36399 61245 61245 0.15331751433109275 RKVKQPTL 8 Unmodified _RKVKQPTL_ 0 0 0 REV__ENSG00000116711|ENST00000367466|PLA2G4A REV__ENSG00000116711|ENST00000367466|PLA2G4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3138122558594 2 485.313826 968.613099 -0.43854 -0.00021283 0.71587 0.00034742 0.27733 0.00013459 485.31400157510143 102.62 0.53168 102.57 102.4 102.93 -0.046684 29 18 2 0 0 0 0.80992 1 56969 56969 0.69038 0 1 2896600 + 52746 19061 35598 36400 61246 61246 0.12753745813768091 RKVLGPGI 8 Unmodified _RKVLGPGI_ 0 0 0 CEBPE|p.A101V|1|0.17|ENSG00000092067|chr14:23118790-23118790|G/A|missense_variant CEBPE|p.A101V|1|0.17|ENSG00000092067|chr14:23118790-23118790|G/A|missense_variant CEBPE|p.A101V|1|0.17|ENSG00000092067|chr14:23118790-23118790|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2772216796875 2 420.276712 838.538872 NaN NaN NaN NaN NaN NaN NaN 103.48 1 103.37 102.87 103.87 -0.10458 0 0 0 0.97444 1 56441 56441 0 0 1 52747 57 35599 36401 61247 61247 0.11314402722246086 RKVLILGSGG 10 Unmodified _RKVLILGSGG_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.3190612792969 2 500.319109 998.623664 0.10851 5.429E-05 0.45608 0.00022819 0.56459 0.00028248 500.31917600133687 102.1 0.40843 101.98 101.81 102.22 -0.11613 30 18 2 0 0 0 0.72607 1 55717 55717 0 0 1 537000 52748 1399 35600 36402 61248 61248 0.12429728468214307 RKVLILGSGG 10 Unmodified _RKVLILGSGG_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.319109 998.623664 0.36671 0.00018347 0.59001 0.00029519 0.95672 0.00047867 500.31935656276954 102.05 0.17525 102.05 101.93 102.11 0 0.032291 5.8918E-05 NaN 0 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 176980 52749 1399 35600 36402 0.12429728468214307 RKVNPAAAL 9 Unmodified _RKVNPAAAL_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2903137207031 2 470.290351 938.566149 -0.13405 -6.3043E-05 1.2619 0.00059345 1.1278 0.00053041 470.2908340529121 20.252 0.13521 20.252 20.175 20.31 0 14 8 2 0 0 0 0.41742 1 10168 10168 11.64 0 1 411400 52750 6477 35601 36403 61249 61249 0.09440886262598269 RKVNPAAAL 9 Unmodified _RKVNPAAAL_ 0 0 0 ENSG00000156697|ENST00000394422|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;nc|ENSG00000156697|Q9BVJ6-2|UTP14A ENSG00000156697|ENST00000394422|UTP14A ENSG00000156697|ENST00000394422|UTP14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2905578613281 2 470.290351 938.566149 -0.39405 -0.00018532 0.12408 5.8352E-05 -0.26997 -0.00012696 470.290389475202 20.095 0.21821 20.124 20.006 20.224 0.028357 13 9 2 0 0 0 0.32871 1 10153 10153 15.847 0 1 1153000 52751 6477 35601 36403 61250 61250 0.09440886262598269 RKVPVAEQLII 11 Unmodified _RKVPVAEQLII_ 0 0 0 REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF REV__ENST00000424203.5_1_21:34876433-34900844:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.3606567382812 2 633.40063 1264.78671 NaN NaN NaN NaN NaN NaN NaN 104.76 1 98.584 98.084 99.084 -6.1757 0 0 0 0.93933 1 70133 70133 2.9952 1.6657 1 + 52752 21460 35602 36404 61251 61251 0.16490486799375503 RKVVPPTF 8 Unmodified _RKVVPPTF_ 0 0 0 REV__nc|ENSG00000175387|Q15796-2|SMAD2 REV__nc|ENSG00000175387|Q15796-2|SMAD2 MSMS AL20221201_MKP_PDAC_01 4 472.2917175292969 2 472.28982 942.565087 NaN NaN NaN NaN NaN NaN NaN 108.68 1 102.51 102.01 103.01 -6.1757 0 0 0 0.97444 1 72625 72625 0.69038 0 1 + 52753 22867 35603 36405 61252 61252 0.0915067189371257 RKWEVPLL 8 Unmodified _RKWEVPLL_ 0 0 0 ENST00000377662.6_1_6:26431111-26431840:+|nuORF;nc|ENSG00000291104|Q96KV6|BTN2A3P ENST00000377662.6_1_6:26431111-26431840:+|nuORF ENST00000377662.6_1_6:26431111-26431840:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8184814453125 2 520.816202 1039.61785 0.24047 0.00012524 2.3985 0.0012492 2.639 0.0013744 520.8178839184826 67.685 0.27713 67.703 67.572 67.849 0.018036 21 13 2 0 0 0 0.40035 1 37195 37195 44.407 2.3125 1 3840900 52754 12525 35604 36406 61253 61253 0.09962629956521596 RKWRKQKPE 9 Unmodified _RKWRKQKPE_ 0 0 0 ENSG00000163611|ENST00000295872|SPICE1;ENST00000460832.1_1_3:113218243-113233639:-|nuORF ENSG00000163611|ENST00000295872|SPICE1 ENSG00000163611|ENST00000295872|SPICE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8748168945312 2 628.372738 1254.73092 -0.49157 -0.00030889 0.55261 0.00034724 0.061038 3.8355E-05 628.8752927608145 104.55 0.052681 104.5 104.47 104.53 -0.048737 7 4 2 0 0 0 0.21897 1 58062 58062 0.45834 0 1 2338200 52755 7028 35605 36407 61254 61254 0.11374698402391914 RKYIIHKY 8 Unmodified _RKYIIHKY_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MSMS AL20221201_MKP_PDAC_01 4 560.8370971679688 2 560.834926 1119.6553 NaN NaN NaN NaN NaN NaN NaN 22.815 1 20.036 19.536 20.536 -2.7784 0 0 0 0.97444 1 12297 12297 2.3027 1.6124 1 52756 4012 35606 36408 61255 61255 0.10025721222132233 RKYLKAAKK 9 Unmodified _RKYLKAAKK_ 0 0 0 REV__nc|ENSG00000066230|P48764-2|SLC9A3 REV__nc|ENSG00000066230|P48764-2|SLC9A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3648071289062 2 553.36385 1104.71315 1.5929 0.00088146 -0.82839 -0.0004584 0.76453 0.00042306 553.3630991537842 109.36 2.5801 103.18 101.24 103.82 -6.1757 886 502 2 0 0 0 0.61256 1 73059 73059 0.6015 0 1 5137800 + 52757 17398 35607 36409 61256 61256 0.16497983147542072 RKYRRLTNVQL 11 Unmodified _RKYRRLTNVQL_ 0 0 0 REV__ENSG00000164576|ENST00000297109|SAP30L REV__ENSG00000164576|ENST00000297109|SAP30L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.4718017578125 4 362.471755 1445.85791 -0.59657 -0.00021624 0.4092 0.00014832 -0.18738 -6.7919E-05 362.47202719089915 14.51 0.074668 14.51 14.46 14.535 0 44 16 4 0 0 0 0.73992 1 6904 6904 0.50596 0.051438 1 2030800 + 52758 21924 35608 36410 61257 61257 0.15281999556736992 RKYRRLTNVQL 11 Unmodified _RKYRRLTNVQL_ 0 0 0 REV__ENSG00000164576|ENST00000297109|SAP30L REV__ENSG00000164576|ENST00000297109|SAP30L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.4718627929688 4 362.471755 1445.85791 -0.57607 -0.00020881 0.96521 0.00034986 0.38914 0.00014105 362.47222084382065 14.505 0.080237 14.474 14.43 14.51 -0.030868 65 24 4 0 0 0 0.73992 1 7059 7059 0.50596 0 1 1673000 + 52759 21924 35608 36410 61258 61258 0.15281999556736992 RLAEAQTYL 9 Unmodified _RLAEAQTYL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;ENSG00000204010|ENST00000371809|IFIT1B nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MSMS AL20221201_MKP_PDAC_01 4 532.7905883789062 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 45.56 1 40.605 40.105 41.105 -4.9549 0 0 0 0.18351 1 27989 27989 32.786 6.5175 1 52760 9407 35609 36411 61259 61259 0.036968414719467546 RLAELELEL 9 Unmodified _RLAELELEL_ 0 0 0 ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3124389648438 2 543.313689 1084.61282 -0.11654 -6.332E-05 0.050507 2.7441E-05 -0.066037 -3.5879E-05 543.3135145341821 71.497 0.21567 71.497 71.384 71.599 0 21 9 3 0 0 0 0.43515 1 39796 39796 10.8 2.0541 1 977930 52761 6100 35610 36412 61260 61260 0.07390281303219126 RLAEVVHEL 9 Unmodified _RLAEVVHEL_ 0 0 0 nc|ENSG00000135164|Q9Y222-5|DMTF1;ENSG00000135164|ENST00000331242|DMTF1;ENST00000582887.1_1_7:86811523-86815316:+|nuORF;ENST00000425406.5_1_7:86811523-86817410:+|nuORF;ENST00000447863.5_1_7:86811523-86824453:+|nuORF nc|ENSG00000135164|Q9Y222-5|DMTF1 nc|ENSG00000135164|Q9Y222-5|DMTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.3060302734375 2 533.306198 1064.59784 0.54557 0.00029095 -0.41195 -0.0002197 0.13361 7.1255E-05 533.3058185534568 38.459 0.31339 38.459 38.306 38.62 0 52 23 3 0 0 0 0.18144 1 20476 20476 24.991 6.8446 1 15224000 52762 4677 35611 36413 61261 61261 0.06812834225888764 RLAEYCEVY 9 Unmodified _RLAEYCEVY_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.513916015625 3 382.514708 1144.5223 0.12249 4.6853E-05 -1.657 -0.00063384 -1.5345 -0.00058698 382.5141829115944 39.904 0.19804 39.607 39.492 39.69 -0.29716 19 9 3 0 0 0 0.55144 1 21063 21063 2.4985 0 1 2109500 52763 8827 35612 36414 61262 61262 -0.04418511016683624 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5527648925781 3 381.552485 1141.63563 NaN NaN NaN NaN NaN NaN NaN 25.259 1 25.242 24.742 25.742 -0.017006 0 0 0 0.74422 1 12932 12932 7.9454 3.7559 1 52764 8608 35613 36415 61263 61263 0.07047345211344691 RLAHYIDRV 9 Unmodified _RLAHYIDRV_ 0 0 0 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 ENSG00000176619|ENST00000325327|LMNB2 MSMS AL20221201_MKP_PDAC_01 4 381.5524291992188 3 381.552485 1141.63563 NaN NaN NaN NaN NaN NaN NaN 28.95 1 25.648 25.148 26.148 -3.3016 0 0 0 0.042606 1 16192 16192 60.899 28.862 1 52765 8608 35613 36415 61264 61264 0.07047345211344691 RLAKYRMRN 9 Unmodified _RLAKYRMRN_ 0 0 0 nc|ENSG00000011021|P51797-5|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-6|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 MSMS AL20221201_MKP_PDAC_01 4 403.2328796386719 3 403.23287 1206.67678 NaN NaN NaN NaN NaN NaN NaN 7.3249 1 4.843 4.343 5.343 -2.482 0 0 0 0.86004 1 3697 3697 0.26902 0 1 52766 16018 35614 36416 61265 61265 0.08170782979209434 RLALAGTA 8 Unmodified _RLALAGTA_ 0 0 0 REV__ENST00000268989.7_1_17:2283605-2283749:+|nuORF REV__ENST00000268989.7_1_17:2283605-2283749:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.2432861328125 2 386.73742 771.460287 1.9566 0.00075668 0.042208 1.6323E-05 1.9988 0.000773 386.7374632595932 103.33 0.040749 97.156 97.138 97.179 -6.1757 17 12 2 0 0 0 8.7369 1 69289 69289 0 0 1 5250900 + 52767 25118 35615 36417 61266 61266 0.06541550417148301 RLAPIPILAAM 11 Unmodified _RLAPIPILAAM_ 0 0 0 REV__nc|ENSG00000185920|Q13635-4|PTCH1 REV__nc|ENSG00000185920|Q13635-4|PTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2421569824219 3 389.242372 1164.70529 0.30538 0.00011887 -0.91112 -0.00035465 -0.60574 -0.00023578 389.241855536821 59.165 0.50397 59.104 58.741 59.245 -0.060719 48 24 3 0 0 0 0.72952 1 32200 32200 0.50596 0 1 3561500 + 52768 23534 35616 36418 61267 61267 0.1295208783576527 RLAPLRHAC 9 Carbamidomethyl (C) _RLAPLRHAC(Carbamidomethyl (C))_ RLAPLRHAC(1) RLAPLRHAC(51) 0 1 0 ENST00000269593.4_1_17:38599756-38599807:+|nuORF ENST00000269593.4_1_17:38599756-38599807:+|nuORF ENST00000269593.4_1_17:38599756-38599807:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2060241699219 3 365.206432 1092.59747 1.0343 0.00037775 -0.8233 -0.00030067 0.21104 7.7073E-05 365.2061099457188 17.288 0.18437 14.702 14.597 14.781 -2.5866 56 25 3 0 0 0 0.037253 1 9003 9003 51.415 36.167 1 7358900 52769 11362 35617 36419 61268 61268 963 0.05487136025044492 RLAPPPPPL 9 Unmodified _RLAPPPPPL_ 0 0 0 REV__ENST00000587811.1_1_19:14593203-14593794:-|nuORF REV__ENST00000587811.1_1_19:14593203-14593794:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 479.298828125 2 479.297645 956.580737 NaN NaN NaN NaN NaN NaN NaN 105.69 1 99.514 99.014 100.01 -6.1757 0 0 0 0.84564 1 70798 70798 2.0598 0 1 + 52770 19374 35618 36420 61269 61269 0.10070958410744879 RLAPRLAITA 10 Unmodified _RLAPRLAITA_ 0 0 0 REV__ENSG00000137509|ENST00000313010|PRCP REV__ENSG00000137509|ENST00000313010|PRCP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2330932617188 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 91.166 1 91.166 90.666 91.666 0 0 0 0 1.0048 1 50421 50421 0.13989 0 1 + 52771 20248 35619 36421 61270 61270 0.139651062508392 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5458374023438 3 367.545219 1099.61383 0.58845 0.00021628 0.82726 0.00030406 1.4157 0.00052034 367.54552553270463 30.348 0.30881 30.267 30.105 30.414 -0.080431 33 11 4 0 0 0 0.094149 1 15727 15727 26.021 15.87 1 22075000 52772 7502 35620 36422 61271 61271 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8148803710938 2 550.81419 1099.61383 0.64922 0.0003576 1.0446 0.00057539 1.6938 0.00093299 550.8147815033991 30.349 0.2856 30.269 30.128 30.414 -0.080431 29 10 4 0 0 0 0.14 1 15737 15737 29.082 12.139 1 12350000 52773 7502 35620 36422 61272 61272 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5455932617188 3 367.545219 1099.61383 -0.10532 -3.871E-05 1.4593 0.00053636 1.354 0.00049765 367.5457522550629 30.118 0.25996 30.148 29.995 30.255 0.030106 36 10 4 0 0 0 0.07916 1 15710 15710 34.932 23.437 1 14820000 52774 7502 35620 36422 61273 61273 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8145141601562 2 550.81419 1099.61383 -0.03047 -1.6783E-05 1.251 0.00068905 1.2205 0.00067226 550.8148854260897 30.109 0.30479 30.139 29.995 30.3 0.030106 35 12 4 0 0 0 0.039985 1 15713 15713 49.933 23.049 1 7632200 52775 7502 35620 36422 61274 61274 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5456237792969 3 367.545219 1099.61383 1.4405 0.00052946 0.32709 0.00012022 1.7676 0.00064968 367.5452900256006 34.357 0.57667 30.262 30.005 30.581 -4.0951 100 33 4 0 0 0 0.094149 3 19814 19693;19814;19941 26.021 19.39 1 150790000 52776 7502 35620 36422 61275;61276;61277 61276 0.06800540462791105 RLAQHITYV 9 Unmodified _RLAQHITYV_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8152465820312 2 550.81419 1099.61383 0.78304 0.00043131 -0.14742 -8.1203E-05 0.63562 0.00035011 550.8140431389318 34.371 0.52467 30.275 30.04 30.565 -4.0951 95 30 4 0 0 0 0.011968 3 19706 19706;19823;19939 74.929 48.045 1 150790000 52777 7502 35620 36422 61278;61279;61280 61278 0.06800540462791105 RLASGPSW 8 Unmodified _RLASGPSW_ 0 0 0 ENST00000243563.7_1_19:41256852-41256948:+|nuORF ENST00000243563.7_1_19:41256852-41256948:+|nuORF ENST00000243563.7_1_19:41256852-41256948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2330322265625 2 437.232502 872.450451 0.85546 0.00037404 1.188 0.00051941 2.0434 0.00089345 437.2328834383228 50.753 0.27283 50.699 50.57 50.842 -0.053875 30 13 3 0 0 0 0.80676 1 27423 27423 2.5775 0 1 2955400 52778 11111 35621 36423 61281 61281 0.009123624117705731 RLASLQSEV 9 Unmodified _RLASLQSEV_ 0 0 0 ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF ENST00000397281.6_1_7:150065961-150066789:+|nuORF ENST00000397281.6_1_7:150065961-150066789:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7822265625 2 501.782556 1001.55056 0.28669 0.00014385 0.73695 0.00036979 1.0236 0.00051364 501.78281014728697 35.757 0.22258 35.757 35.635 35.858 0 25 10 3 0 0 0 0.10247 1 18904 18904 32.786 8.7651 1 7213500 52779 12819 35622 36424 61282 61282 0.04984554954910436 RLASLQSEV 9 Unmodified _RLASLQSEV_ 0 0 0 ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF ENST00000397281.6_1_7:150065961-150066789:+|nuORF ENST00000397281.6_1_7:150065961-150066789:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7831420898438 2 501.782556 1001.55056 0.9811 0.0004923 -0.025849 -1.297E-05 0.95525 0.00047933 501.7823987940913 40.666 0.4223 36.137 35.934 36.356 -4.5294 41 25 2 0 0 0 0.017075 2 24272 24272;24405 66.457 12.624 1 27368000 52780 12819 35622 36424 61283;61284 61283 0.04984554954910436 RLASLVVLL 9 Unmodified _RLASLVVLL_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4;nc|ENSG00000167608|Q7Z404-3|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MSMS AL20221201_MKP_PDAC_01 4 492.3341369628906 2 492.334227 982.653902 NaN NaN NaN NaN NaN NaN NaN 99.892 1 93.716 93.216 94.216 -6.1757 0 0 0 0.12343 1 66665 66665 39.95 7.6442 1 52781 7636 35623 36425 61285 61285 0.1618808713337785 RLASTLVHL 9 Unmodified _RLASTLVHL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3108215332031 2 505.311284 1008.60801 0.058299 2.9459E-05 0.20361 0.00010289 0.26191 0.00013235 505.3114466909372 44.496 0.43301 44.474 44.325 44.758 -0.022064 43 22 3 0 0 0 0.010611 2 23830 23830;23928 78.728 17.371 1 55835000 52782 5318;130;1026 35624 36426 61286;61287 61286 0.10405441951138528 RLASTLVHL 9 Unmodified _RLASTLVHL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000070371|P53675-2|CLTCL1 ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3115234375 2 505.311284 1008.60801 0.91154 0.00046061 -0.034187 -1.7275E-05 0.87735 0.00044334 505.3112809575033 49.754 0.42271 44.215 44.017 44.439 -5.5391 61 26 3 0 0 0 0.028475 1 31178 31178 56.177 12.319 1 75507000 52783 5318;130;1026 35624 36426 61288 61288 0.10405441951138528 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171403|ENST00000246662|KRT9;CON__P35527;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.80908203125 2 532.808574 1063.60259 0.63587 0.0003388 -0.16217 -8.6407E-05 0.4737 0.00025239 532.8084576894748 38.916 0.30672 38.916 38.77 39.077 0 41 13 4 0 0 0 0.012668 1 20794 20794 72.968 31.128 1 28252000 + 52784 169;167;173;135;157 35625 36427 61289 61289 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171403|ENST00000246662|KRT9;CON__P35527;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8080444335938 2 532.808574 1063.60259 -0.077616 -4.1354E-05 -0.3422 -0.00018233 -0.41982 -0.00022368 532.8083414406681 39.18 0.29804 38.893 38.741 39.039 -0.28687 48 13 5 0 0 0 0.010301 2 20621 20621;20726 79.596 35.738 1 125410000 + 52785 169;167;173;135;157 35625 36427 61290;61291 61290 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171403|ENST00000246662|KRT9;CON__P35527;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8076782226562 2 532.808574 1063.60259 0.19978 0.00010644 -0.26421 -0.00014077 -0.064433 -3.433E-05 532.8084367314368 38.797 0.28032 38.808 38.64 38.92 0.011452 42 13 4 0 0 0 0.0081887 2 20586 20586;20694 93.166 43.233 1 43046000 + 52786 169;167;173;135;157 35625 36427 61292;61293 61292 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171403|ENST00000246662|KRT9;CON__P35527;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5420227050781 3 355.541475 1063.60259 1.2235 0.00043499 -0.33594 -0.00011944 0.88752 0.00031555 355.54152267867164 44.069 0.65624 39.305 38.935 39.591 -4.7648 105 44 3 0 0 0 0.025842 3 26921 26689;26784;26921 46.022 24.432 1 69044000 + 52787 169;167;173;135;157 35625 36427 61294;61295;61296 61296 0.07333718368658992 RLASYLDKV 9 Unmodified _RLASYLDKV_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;ENSG00000171403|ENST00000246662|KRT9;CON__P35527;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8087768554688 2 532.808574 1063.60259 0.49424 0.00026334 -0.33658 -0.00017934 0.15765 8.4E-05 532.8085808334965 44.052 0.8717 39.287 38.772 39.644 -4.7648 140 58 3 0 0 0 0.069655 1 27017 27017 40.239 12.61 1 364500000 + 52788 169;167;173;135;157 35625 36427 61297 61297 0.07333718368658992 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.811767578125 2 546.811648 1091.60874 0.31074 0.00016992 0.0010534 5.76E-07 0.3118 0.00017049 546.8111993561365 39.568 0.27581 39.568 39.424 39.7 0 30 12 3 0 0 0 0.11005 1 21202 21202 32.037 5.7693 1 17419000 52789 2759 35626 36428 61298 61298 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8766174316406 3 364.876857 1091.60874 NaN NaN NaN NaN NaN NaN NaN 39.646 1 39.646 39.146 40.146 0 0 0 0 0.41144 1 21260 21260 14.218 8.8155 1 52790 2759 35626 36428 61299 61299 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.811767578125 2 546.811648 1091.60874 -0.030263 -1.6548E-05 0.025549 1.397E-05 -0.0047141 -2.5777E-06 546.8116030865085 39.878 0.39015 39.581 39.392 39.782 -0.29716 70 18 5 0 0 0 0.013118 2 21091 20988;21091 71.708 29.868 1 179880000 52791 2759 35626 36428 61300;61301 61301 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.8766784667969 3 364.876857 1091.60874 0.087093 3.1778E-05 0.14814 5.4052E-05 0.23523 8.5831E-05 364.87692413418876 39.874 0.30422 39.577 39.431 39.735 -0.29716 43 14 4 0 0 0 0.021948 2 21026 21026;21129 49.742 33.176 1 16028000 52792 2759 35626 36428 61302;61303 61302 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8118896484375 2 546.811648 1091.60874 0.30521 0.00016689 -0.2886 -0.00015781 0.016612 9.0836E-06 546.8114943548421 39.511 0.39278 39.522 39.323 39.716 0.011452 69 18 5 0 0 0 0.040733 2 20994 20994;21093 49.527 14.594 1 115060000 52793 2759 35626 36428 61304;61305 61304 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2122497558594 3 364.876857 1091.60874 0.23117 8.4348E-05 -0.013156 -4.8003E-06 0.21801 7.9548E-05 364.87685518559454 39.488 0.51525 39.5 39.323 39.838 0.011452 45 24 3 0 0 0 0.040683 2 21008 21008;21014 39.213 24.808 1 14599000 52794 2759 35626 36428 61306;61307 61306 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.31201171875 2 546.811648 1091.60874 0.4777 0.00026121 -0.098442 -5.3829E-05 0.37925 0.00020738 546.8115882871793 44.843 0.56453 39.991 39.715 40.28 -4.852 134 42 4 0 0 0 0.082934 3 27261 27261;27386;27529 37.075 10.807 1 527700000 52795 2759 35626 36428 61308;61309;61310 61308 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8775024414062 3 364.876857 1091.60874 1.2087 0.00044104 -0.054263 -1.9799E-05 1.1545 0.00042124 364.8768535939939 44.84 0.49754 39.988 39.782 40.28 -4.852 105 36 4 0 0 0 0.021948 3 27294 27294;27423;27565 49.742 33.467 1 130880000 52796 2759 35626 36428 61311;61312;61313 61311 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8118896484375 2 546.811648 1091.60874 0.58152 0.00031798 -1.516 -0.00082899 -0.93452 -0.00051101 546.8114374835116 67.091 1.9067 60.916 59.965 61.871 -6.1757 249 108 3 0 0 0 0.11005 2 43480 43480;43880 32.037 5.7693 1 75944000 52797 2759 35626 36428 61314;61315 61314 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8773498535156 3 364.876857 1091.60874 1.3691 0.00049954 -0.38249 -0.00013956 0.98658 0.00035998 364.87679296529836 67.291 1.0093 61.116 60.537 61.546 -6.1757 81 56 2 0 0 0 0.018061 4 43961 43565;43690;43822;43961 53.47 36.904 1 16914000 52798 2759 35626 36428 61316;61317;61318;61319 61319 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20221201_MKP_PDAC_01 4 364.8775329589844 3 364.876857 1091.60874 NaN NaN NaN NaN NaN NaN NaN 66.413 1 60.237 59.737 60.737 -6.1757 0 0 0 0.090869 1 43194 43194 36.395 24.22 1 52799 2759 35626 36428 61320 61320 0.06660236600191638 RLASYLDRV 9 Unmodified _RLASYLDRV_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20221201_MKP_PDAC_01 4 364.8773193359375 3 364.876857 1091.60874 NaN NaN NaN NaN NaN NaN NaN 66.7 1 60.524 60.024 61.024 -6.1757 0 0 0 0.10661 1 43396 43396 32.898 14.177 1 52800 2759 35626 36428 61321 61321 0.06660236600191638 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.817138671875 2 539.816399 1077.61824 0.62871 0.00033939 0.29591 0.00015974 0.92462 0.00049912 539.8165026821515 38.733 0.34682 38.733 38.556 38.903 0 50 15 4 0 0 0 0.017075 1 20685 20685 66.457 18.708 1 66103000 + 52801 176;210;208 35627 36429 61322 61322 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2138671875 3 360.213358 1077.61824 0.47183 0.00016996 0.33578 0.00012095 0.80761 0.00029091 360.21350734394673 38.749 0.25972 38.749 38.598 38.858 0 36 11 4 0 0 0 0.040683 1 20694 20694 39.213 18.632 1 5796200 + 52802 176;210;208 35627 36429 61323 61323 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8167724609375 2 539.816399 1077.61824 -0.16346 -8.8236E-05 -0.52793 -0.00028499 -0.69139 -0.00037322 539.8160286094161 38.994 0.43973 38.707 38.541 38.981 -0.28687 57 19 4 0 0 0 0.01958 2 20506 20506;20607 63.961 24.011 1 376710000 + 52803 176;210;208 35627 36429 61324;61325 61324 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2134704589844 3 360.213358 1077.61824 -0.0367 -1.322E-05 -0.39693 -0.00014298 -0.43363 -0.0001562 360.2132795135759 39.028 0.29489 38.741 38.541 38.836 -0.28687 30 12 3 0 0 0 0.025842 1 20531 20531 46.022 21.141 1 13810000 + 52804 176;210;208 35627 36429 61326 61326 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8155517578125 2 539.816399 1077.61824 0.14338 7.7401E-05 -0.80683 -0.00043554 -0.66345 -0.00035814 539.8159232051288 38.568 0.32869 38.582 38.431 38.76 0.013718 52 15 4 0 0 0 0.017075 2 20475 20475;20579 66.457 10.28 1 129680000 + 52805 176;210;208 35627 36429 61327;61328 61327 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.21337890625 3 360.213358 1077.61824 0.05977 2.153E-05 0.28151 0.0001014 0.34128 0.00012293 360.2135439745913 38.58 0.2431 38.592 38.455 38.698 0.011452 23 11 3 0 0 0 0.032796 1 20523 20523 42.312 20.722 1 3724100 + 52806 176;210;208 35627 36429 61329 61329 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8165283203125 2 539.816399 1077.61824 0.44675 0.00024116 0.12433 6.7117E-05 0.57109 0.00030828 539.8164045787911 43.899 0.65497 39.134 38.857 39.512 -4.7648 145 43 5 0 0 0 0.021948 3 26715 26577;26715;26851 61.602 15.553 1 890370000 + 52807 176;210;208 35627 36429 61330;61331;61332 61331 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2140197753906 3 360.213358 1077.61824 1.2555 0.00045225 0.29948 0.00010788 1.555 0.00056012 360.21346181262584 43.896 0.52383 39.131 38.857 39.381 -4.7648 95 33 4 0 0 0 0.018061 3 26862 26590;26726;26862 53.47 22.654 1 150610000 + 52808 176;210;208 35627 36429 61333;61334;61335 61335 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2134094238281 3 360.213358 1077.61824 1.2922 0.00046547 -1.3876 -0.00049982 -0.095343 -3.4344E-05 360.2129872134749 67.728 0.32008 61.552 61.352 61.673 -6.1757 23 17 2 0 0 0 0.021948 2 44204 43998;44204 49.742 24.86 1 14251000 + 52809 176;210;208 35627 36429 61336;61337 61337 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8165283203125 2 539.816399 1077.61824 0.67345 0.00036354 -1.8563 -0.0010021 -1.1829 -0.00063853 539.815044789472 69.363 0.87709 63.187 62.869 63.746 -6.1757 88 47 2 0 0 0 0.01958 3 45621 45344;45474;45621 63.961 11.448 1 45904000 + 52810 176;210;208 35627 36429 61338;61339;61340 61340 0.0825400488570267 RLASYLEKV 9 Unmodified _RLASYLEKV_ 0 0 0 ENSG00000204889|ENST00000377755|KRT40;CON__Q6IFU5;ENSG00000131737|ENST00000394001|KRT34;CON__O76011;ENSG00000131738|ENST00000251646|KRT33B;ENSG00000006059|ENST00000007735|KRT33A;CON__Q6NTB9;CON__Q14525;CON__O76009;ENSG00000094796|ENST00000251645|KRT31;CON__Q9UE12;CON__Q15323;CON__Q8IUT8;CON__P35900;ENSG00000171431|ENST00000167588|KRT20;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075 ENSG00000204889|ENST00000377755|KRT40;CON__P35900;ENST00000582754.5_1_17:39081604-39092927:-|nuORF CON__P35900 MSMS AL20221201_MKP_PDAC_01 4 360.2133483886719 3 360.213358 1077.61824 NaN NaN NaN NaN NaN NaN NaN 68.029 1 61.854 61.354 62.354 -6.1757 0 0 0 0.032269 1 44372 44372 53.47 18.537 1 + 52811 176;210;208 35627 36429 61341 61341 0.0825400488570267 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8114624023438 2 494.811116 987.60768 0.3925 0.00019422 -0.33797 -0.00016723 0.054533 2.6984E-05 494.8110104994853 24.674 0.13884 24.699 24.641 24.78 0.024429 9 5 2 0 0 0 0.085319 1 12747 12747 36.506 1.5741 1 2685600 52812 14130 35628 36430 61342 61342 0.11338022231279865 RLATLKSTV 9 Unmodified _RLATLKSTV_ 0 0 0 ENST00000495744.5_1_3:142315288-142364209:+|nuORF;ENST00000483373.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF ENST00000495744.5_1_3:142315288-142364209:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.8117370605469 2 494.811116 987.60768 0.62146 0.0003075 1.4818 0.0007332 2.1032 0.0010407 494.81214841451146 28.292 0.25947 25.143 25.003 25.262 -3.1482 25 13 2 0 0 0 0.021948 1 15729 15729 61.602 2.2335 1 14149000 52813 14130 35628 36430 61343 61343 0.11338022231279865 RLAVITQNI 9 Unmodified _RLAVITQNI_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1;ENST00000488737.6_1_7:87133561-87160896:-|nuORF ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3162841796875 2 514.316566 1026.61858 0.5763 0.0002964 -0.52795 -0.00027153 0.048349 2.4867E-05 514.3161271389623 48.316 0.23926 48.277 48.142 48.382 -0.038643 16 11 2 0 0 0 0.094149 1 26038 26038 34.402 5.3201 1 4015100 52814 1413 35629 36431 61344 61344 0.10633424605566688 RLAVYIDKV 9 Unmodified _RLAVYIDKV_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8275146484375 2 538.826766 1075.63898 0.63448 0.00034188 0.037441 2.0174E-05 0.67192 0.00036205 538.8269102408846 48.219 0.3335 42.985 42.808 43.142 -5.2339 39 19 3 0 0 0 0.040733 1 29981 29981 62.573 16.873 1 20955000 52815 2962 35630 36432 61345 61345 0.1041859526535518 RLAVYIDRV 9 Unmodified _RLAVYIDRV_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8298950195312 2 552.82984 1103.64513 NaN NaN NaN NaN NaN NaN NaN 44.122 1 43.806 43.306 44.306 -0.31585 0 0 0 1.3063E-06 1 23515 23515 160.69 85.761 1 52816 6753 35631 36433 61346 61346 0.09745113496887825 RLAVYIDRV 9 Unmodified _RLAVYIDRV_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8302001953125 2 552.82984 1103.64513 0.33556 0.00018551 -0.16829 -9.3035E-05 0.16727 9.2471E-05 552.8297707119327 43.791 0.16847 43.775 43.657 43.825 -0.015667 18 7 3 0 0 0 0.011211 1 23453 23453 83.429 41.334 1 42431000 52817 6753 35631 36433 61347 61347 0.09745113496887825 RLAVYIDRV 9 Unmodified _RLAVYIDRV_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8298950195312 2 552.82984 1103.64513 0.66405 0.00036711 -0.79965 -0.00044207 -0.1356 -7.4963E-05 552.8293597699117 48.968 0.33741 43.572 43.407 43.745 -5.3961 48 21 3 0 0 0 0.11412 1 30551 30551 33.445 10.709 1 128370000 52818 6753 35631 36433 61348 61348 0.09745113496887825 RLCGRVRPV 9 Unmodified _RLCGRVRPV_ 0 0 0 REV__ENST00000426077.2_1_2:120980139-120980361:-|nuORF REV__ENST00000426077.2_1_2:120980139-120980361:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5465393066406 3 352.546677 1054.6182 -0.32081 -0.0001131 1.3148 0.00046352 0.99396 0.00035042 352.547128301749 36.795 0.78095 36.817 36.661 37.442 0.021545 54 35 2 0 0 0 0.41742 1 19560 19560 7.609 2.7119 1 1920300 + 52819 26902 35632 36434 61349 61349 0.09307726404699679 RLCGSAIPPAF 11 Unmodified _RLCGSAIPPAF_ 0 0 0 ENSG00000130881|ENST00000253193|LRP3;ENST00000590275.1_1_19:33693878-33695988:+|nuORF;ENST00000590278.1_1_19:33695337-33695988:+|nuORF ENSG00000130881|ENST00000253193|LRP3 ENSG00000130881|ENST00000253193|LRP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8708190917969 3 377.870826 1130.59065 0.61992 0.00023425 -0.335 -0.00012659 0.28492 0.00010766 377.87084622563003 46.775 0.37381 46.438 46.25 46.624 -0.33664 27 18 2 0 0 0 0.70701 1 25092 25092 1.4551 0.24029 1 1732200 52820 4274 35633 36435 61350 61350 0.030577783538092262 RLCGSWWRRW 10 Unmodified _RLCGSWWRRW_ 0 0 0 ENST00000463712.6_1_9:15489396-15510916:-|nuORF;ENST00000484265.1_1_9:15506557-15510916:-|nuORF;ENST00000488797.1_1_9:15492189-15510916:-|nuORF ENST00000463712.6_1_9:15489396-15510916:-|nuORF ENST00000463712.6_1_9:15489396-15510916:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.3540649414062 2 703.356565 1404.69858 NaN NaN NaN NaN NaN NaN NaN 17.271 1 17.276 16.776 17.776 0.0050564 0 0 0 1.0029 1 8705 8705 0.35063 0.043601 1 52821 13701 35634 36436 61351 61351 0.012415877277362597 RLCHFYHIY 9 Unmodified _RLCHFYHIY_ 0 0 0 REV__ENSG00000108465|ENST00000338399|CDK5RAP3 REV__ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2083740234375 3 417.874571 1250.60188 -0.20392 -8.5211E-05 2.283 0.000954 2.0791 0.00086879 418.2089354131096 21.762 0.35639 21.785 21.626 21.982 0.022894 28 16 2 0 0 0 0.61381 1 11145 11145 0.23584 0 1 850860 + 52822 18607 35635 36437 61352 61352 -0.013393995520345925 RLCISFFLF 9 Unmodified _RLCISFFLF_ 0 0 0 REV__ENST00000534669.1_1_2:17942696-17946406:+|nuORF REV__ENST00000534669.1_1_2:17942696-17946406:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3138427734375 2 573.312438 1144.61032 0.80771 0.00046307 0.43172 0.00024751 1.2394 0.00071058 573.3127448345191 50.766 0.80461 50.353 50.051 50.856 -0.41351 75 39 3 0 0 0 0.54444 1 27356 27356 4.756 0 1 13440000 + 52823 28505 35636 36438 61353 61353 0.04380154364571354 RLCKDEQKSSD 11 Unmodified _RLCKDEQKSSD_ 0 0 0 REV__nc|ENSG00000100767|O95428-6|PAPLN REV__nc|ENSG00000100767|O95428-6|PAPLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8796691894531 3 436.878598 1307.61396 NaN NaN NaN NaN NaN NaN NaN 88.244 1 88.244 87.744 88.744 0 0 0 0 0.9428 1 48848 48848 0.50596 0.23694 1 + 52824 18107 35637 36439 61354 61354 -0.027538723901898265 RLCPHPLLR 9 Unmodified _RLCPHPLLR_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8277587890625 2 552.826578 1103.6386 0.27758 0.00015345 0.22431 0.000124 0.50189 0.00027746 552.8264071671256 51.065 0.65177 50.651 50.376 51.028 -0.41351 79 32 4 0 0 0 0.10734 1 27563 27563 32.305 5.4218 1 15057000 52825 4713 35638 36440 61355 61355 0.09092897064510908 RLCRLRWDFVL 11 Unmodified _RLCRLRWDFVL_ 0 0 0 ENST00000428024.3_1_1:155209849-155214415:-|nuORF;ENST00000327247.9_1_1:155210919-155214415:-|nuORF ENST00000428024.3_1_1:155209849-155214415:-|nuORF ENST00000428024.3_1_1:155209849-155214415:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.9446716308594 3 492.946729 1475.81836 NaN NaN NaN NaN NaN NaN NaN 31.107 1 31.137 30.637 31.637 0.030106 0 0 0 0.9428 1 16284 16284 0.50596 0.09769 1 52826 11825 35639 36441 61356 61356 0.09948156281643605 RLCRPWRWWWT 11 Unmodified _RLCRPWRWWWT_ 0 0 0 REV__ENST00000341948.6_1_5:140595634-140595910:+|nuORF REV__ENST00000341948.6_1_5:140595634-140595910:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.4197387695312 2 823.419697 1644.82484 NaN NaN NaN NaN NaN NaN NaN 54.847 1 54.847 54.347 55.347 0 0 0 0 0.9435 1 30458 30458 0 0 1 + 52827 25712 35640 36442 61357 61357 0.028220942330335674 RLCTTKSHK 9 Unmodified _RLCTTKSHK_ 0 0 0 REV__ENSG00000168795|ENST00000307750|ZBTB5 REV__ENSG00000168795|ENST00000307750|ZBTB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5354309082031 3 358.534326 1072.58115 0.84376 0.00030252 1.1596 0.00041574 2.0033 0.00071826 358.5348187087141 6.534 0.13812 4.052 4.0035 4.1416 -2.482 82 59 2 0 0 0 0.61381 1 3309 3309 0.23584 0.23584 1 973020 + 52828 22345 35641 36443 61358 61358 0.04776010068303549 RLDDSLLYL 9 Unmodified _RLDDSLLYL_ 0 0 0 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3065795898438 2 554.305864 1106.59717 0.80506 0.00044625 0.66529 0.00036877 1.4703 0.00081502 554.30625695751 73.949 0.38255 73.949 73.738 74.121 0 48 16 4 0 0 0 0.13231 1 41193 41193 29.841 12.728 1 5687400 52829 3116 35642 36444 61359 61359 0.04813994786195508 RLDDSLLYL 9 Unmodified _RLDDSLLYL_ 0 0 0 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 ENSG00000115364|ENST00000393909|MRPL19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.30615234375 2 554.305864 1106.59717 0.91603 0.00050776 -0.29627 -0.00016423 0.61976 0.00034354 554.3056801551932 74.367 0.35304 73.891 73.667 74.02 -0.47588 35 14 3 0 0 0 0.085319 2 40669 40669;40771 36.506 13.77 1 4857900 52830 3116 35642 36444 61360;61361 61360 0.04813994786195508 RLDEAYYCL 9 Unmodified _RLDEAYYCL_ 0 0 0 REV__ENSG00000146205|ENST00000674324|ANO7 REV__ENSG00000146205|ENST00000674324|ANO7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5137939453125 3 382.514708 1144.5223 NaN NaN NaN NaN NaN NaN NaN 39.494 1 39.506 39.006 40.006 0.011452 0 0 0 0.82396 1 21038 21038 2.7352 0.82882 1 + 52831 20817 35643 36445 61362 61362 -0.04418511016683624 RLDELGGVYL 10 Unmodified _RLDELGGVYL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.812255859375 2 567.811313 1133.60807 0.23502 0.00013344 0.60193 0.00034178 0.83694 0.00047523 567.8116403270203 65.103 0.36568 65.103 64.955 65.32 0 48 15 4 0 0 0 0.24511 2 36376 36279;36376 30.703 10.289 1 10591000 52832 3388 35644 36446 61363;61364 61364 0.04661397160475644 RLDELGGVYL 10 Unmodified _RLDELGGVYL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8108520507812 2 567.811313 1133.60807 0.28183 0.00016003 0.35152 0.0001996 0.63335 0.00035963 567.811505809788 65.566 0.36865 65.082 64.898 65.267 -0.48428 49 16 4 0 0 0 0.24511 2 35755 35755;35868 30.703 9.6331 1 13492000 52833 3388 35644 36446 61365;61366 61365 0.04661397160475644 RLDETIQAI 9 Unmodified _RLDETIQAI_ 0 0 0 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2478637695312 2 529.795663 1057.57677 0.81173 0.00043005 -0.16583 -8.7854E-05 0.6459 0.0003422 529.7956668863493 45.972 0.26998 45.972 45.838 46.108 0 27 12 3 0 0 0 0.18094 1 25090 25090 20.415 3.3016 1 13307000 52834 2159 35645 36447 61367 61367 0.05028824126384279 RLDETIQAI 9 Unmodified _RLDETIQAI_ 0 0 0 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 ENSG00000103671|ENST00000261884|TRIP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.796875 2 529.795663 1057.57677 0.88804 0.00047048 0.32129 0.00017022 1.2093 0.0006407 529.7960089374202 52.532 0.28499 46.798 46.691 46.976 -5.7345 20 15 2 0 0 0 0.011671 1 33167 33167 75.761 9.3041 1 21110000 52835 2159 35645 36447 61368 61368 0.05028824126384279 RLDLLKWE 8 Unmodified _RLDLLKWE_ 0 0 0 REV__ENSG00000189420|ENST00000338647|ZFP92 REV__ENSG00000189420|ENST00000338647|ZFP92 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.0513610839844 3 358.209836 1071.60768 -0.070328 -2.5192E-05 1.7817 0.00063823 1.7114 0.00061304 358.21034164488424 38.004 0.60437 38.021 37.731 38.336 0.01704 60 27 3 0 0 0 8.7369 1 20244 20244 3.5965 0 1 3292700 + 52836 23781 35646 36448 61369 61369 0.07474022231281197 RLDQIQFEYR 10 Unmodified _RLDQIQFEYR_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.5736694335938 3 456.573726 1366.69935 NaN NaN NaN NaN NaN NaN NaN 45.504 1 45.504 45.004 46.004 0 0 0 0 0.80293 1 24810 24810 12.175 2.4105 1 + 52837 21759 35647 36449 61370 61370 0.03066660857803072 RLDVSLPFV 9 Unmodified _RLDVSLPFV_ 0 0 0 nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1;nc|ENSG00000137337|Q14676-4|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 nc|ENSG00000137337|Q14676-3|MDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3045654296875 2 523.305667 1044.59678 0.90377 0.00047295 -2.4471 -0.0012806 -1.5434 -0.00080766 523.3041450537158 98.563 0.10367 92.387 92.324 92.427 -6.1757 10 7 2 0 0 0 0.13231 1 65397 65397 29.841 4.4413 1 20218000 52838 4924 35648 36450 61371 61371 0.0762661985700106 RLECFYKFDF 10 Unmodified _RLECFYKFDF_ 0 0 0 REV__ENST00000534667.1_1_11:64880702-64881078:+|nuORF REV__ENST00000534667.1_1_11:64880702-64881078:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.5535583496094 3 456.553274 1366.63799 0.5678 0.00025923 -0.061811 -2.822E-05 0.50599 0.00023101 456.5533950708628 74.088 0.24165 74.132 73.963 74.205 0.043983 13 10 2 0 0 0 0.71276 1 40857 40857 0.62683 0.12087 1 1743800 + 52839 21013 35649 36451 61372 61372 -0.030659871658599513 RLEDMTHTEF 10 Unmodified _RLEDMTHTEF_ 0 0 0 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 REV__nc|ENSG00000163092|A4UGR9-2|XIRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.2977294921875 2 639.792795 1277.57104 -0.033334 -2.1327E-05 -0.0072462 -4.6361E-06 -0.04058 -2.5963E-05 639.7912919389303 37.785 0.41512 37.785 37.51 37.925 0 58 20 4 0 0 0 0.52888 1 20073 20073 14.838 4.7643 1 9572900 + 52840 21725 35650 36452 61373 61373 -0.05664642447595725 RLEDQVHAL 9 Unmodified _RLEDQVHAL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7943725585938 2 540.793455 1079.57236 -0.6385 -0.0003453 1.4998 0.00081109 0.86131 0.00046579 540.7942523249992 32.099 0.16342 32.099 31.983 32.146 0 11 7 2 0 0 0 0.40476 1 16752 16752 12.241 2.8575 1 765220 52841 10329 35651 36453 61374 61374 0.035753597034727136 RLEELIVAL 9 Unmodified _RLEELIVAL_ 0 0 0 REV__ENSG00000057704|ENST00000261226|TMCC3 REV__ENSG00000057704|ENST00000261226|TMCC3 MSMS AL20221201_MKP_PDAC_01 4 528.3269653320312 2 528.326599 1054.63865 NaN NaN NaN NaN NaN NaN NaN 78.207 1 72.031 71.531 72.531 -6.1757 0 0 0 0.15549 1 51181 51181 36.127 0 1 + 52842 17306 35652 36454 61375 61375 0.11351175545541992 RLEELIVAL 9 Unmodified _RLEELIVAL_ 0 0 0 REV__ENSG00000057704|ENST00000261226|TMCC3 REV__ENSG00000057704|ENST00000261226|TMCC3 MSMS AL20221201_MKP_PDAC_01 4 528.3272094726562 2 528.326599 1054.63865 NaN NaN NaN NaN NaN NaN NaN 78.393 1 72.218 71.718 72.718 -6.1757 0 0 0 0.15549 1 51312 51312 36.127 1.195 1 + 52843 17306 35652 36454 61376 61376 0.11351175545541992 RLEKELYEL 9 Unmodified _RLEKELYEL_ 0 0 0 REV__nc|ENSG00000145103|Q86SU0-2|ILDR1 REV__nc|ENSG00000145103|Q86SU0-2|ILDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2243347167969 3 398.223923 1191.64994 0.69148 0.00027536 0.17294 6.8869E-05 0.86442 0.00034423 398.2239788196899 42.609 0.31094 42.609 42.445 42.756 0 53 15 4 0 0 0 0.037253 2 23143 23026;23143 51.415 24.192 1 45895000 + 52844 20753 35653 36455 61377;61378 61378 0.061779528489978475 RLELVLRLPEK 11 Unmodified _RLELVLRLPEK_ 0 0 0 REV__ENST00000316292.13_1_6:74230456-74230621:-|nuORF REV__ENST00000316292.13_1_6:74230456-74230621:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.9571533203125 3 455.9574 1364.85037 NaN NaN NaN NaN NaN NaN NaN 103.27 1 103.22 102.72 103.72 -0.047928 0 0 0 0.9435 1 57348 57348 0 0 1 + 52845 25469 35654 36456 61379 61379 0.18253847236428555 RLEMWERGNG 10 Unmodified _RLEMWERGNG_ 0 0 0 ENSG00000171824|ENST00000376936|EXOSC10;nc|ENSG00000171824|Q01780-2|EXOSC10;ENST00000485606.1_1_1:11140819-11141291:-|nuORF ENSG00000171824|ENST00000376936|EXOSC10 ENSG00000171824|ENST00000376936|EXOSC10 MSMS AL20221201_MKP_PDAC_01 4 416.5368347167969 3 416.536506 1246.58769 NaN NaN NaN NaN NaN NaN NaN 21.373 1 18.638 18.138 19.138 -2.7348 0 0 0 0.8671 1 11439 11439 5.4027 2.0831 1 52846 8147 35655 36457 61380 61380 -0.025740967709907636 RLETRRRRRRR 11 Unmodified _RLETRRRRRRR_ 0 0 0 REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF REV__ENST00000396212.6_1_16:19535261-19535342:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.00390625 2 806.004171 1609.99379 NaN NaN NaN NaN NaN NaN NaN 107.85 1 107.8 107.3 108.3 -0.047607 0 0 0 0.9435 1 59742 59742 0 0 1 + 52847 26502 35656 36458 61381 61381 0.21319131910740907 RLFDDVPQV 9 Unmodified _RLFDDVPQV_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7899169921875 2 544.790381 1087.56621 0.45085 0.00024562 -0.040298 -2.1954E-05 0.41055 0.00022366 544.7904249634163 57.784 0.40329 57.784 57.633 58.036 0 44 17 3 0 0 0 0.014417 2 32134 32134;32231 69.105 43.706 1 14790000 52848 7248 35657 36459 61382;61383 61382 0.025928414719373905 RLFDDVPQV 9 Unmodified _RLFDDVPQV_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7905883789062 2 544.790381 1087.56621 0.030048 1.637E-05 -0.066372 -3.6159E-05 -0.036324 -1.9789E-05 544.7904106355819 58.341 0.32688 57.85 57.701 58.028 -0.49079 41 15 3 0 0 0 0.032796 1 31724 31724 53.833 17.706 1 17055000 52849 7248 35657 36459 61384 61384 0.025928414719373905 RLFDEPQLASL 11 Unmodified _RLFDEPQLASL_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1;ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENSG00000064726|ENST00000261721|BTBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8485107421875 2 644.848427 1287.6823 -0.070434 -4.5419E-05 0.049374 3.1839E-05 -0.02106 -1.358E-05 644.8485687362568 69.195 0.31906 68.715 68.554 68.873 -0.48071 29 13 3 0 0 0 0.47137 1 37818 37818 17.863 9.7076 1 1794200 52850 884;4499;15635 35658 36460 61385 61385 0.04996740251999654 RLFDEPQLASL 11 Unmodified _RLFDEPQLASL_ 0 0 0 ENSG00000133243|ENST00000255608|BTBD2;ENST00000589685.2_1_19:1986489-1990887:-|nuORF;ENSG00000064726|ENST00000261721|BTBD1;nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENSG00000133243|ENST00000255608|BTBD2;ENSG00000064726|ENST00000261721|BTBD1;ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENSG00000064726|ENST00000261721|BTBD1 MSMS AL20221201_MKP_PDAC_01 4 644.8497314453125 2 644.848427 1287.6823 NaN NaN NaN NaN NaN NaN NaN 89.113 1 82.937 82.437 83.437 -6.1757 0 0 0 0.63153 1 58814 58814 19.626 7.9857 1 52851 884;4499;15635 35658 36460 61386 61386 0.04996740251999654 RLFDNAPLI 9 Unmodified _RLFDNAPLI_ 0 0 0 ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF ENST00000565062.5_1_16:90097706-90103159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8036499023438 2 529.803291 1057.59203 0.18742 9.9294E-05 0.62959 0.00033356 0.81701 0.00043285 529.8035711310291 75.873 0.26477 75.921 75.773 76.037 0.047943 22 11 3 0 0 0 0.36964 1 41842 41842 13.906 0 1 5634500 52852 15396 35659 36461 61387 61387 0.06553735714237519 RLFDPINLVF 10 Unmodified _RLFDPINLVF_ 0 0 0 nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83-1|COG5;nc|ENSG00000164597|Q9UP83|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 nc|ENSG00000164597|Q9UP83-3|COG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3568115234375 2 617.353148 1232.69174 4.4576 0.0027519 1.5957 0.00098511 6.0533 0.003737 617.3542014650878 98.933 0.14356 98.905 98.804 98.948 -0.028282 13 4 4 0 0 0 0.1887 1 54953 54953 27.223 14.983 1 6029500 52853 7210 35660 36462 61388 61388 0.08470553328152164 RLFDQAFGL 9 Unmodified _RLFDQAFGL_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.7884521484375 2 533.787641 1065.56073 0.40534 0.00021636 0.64512 0.00034436 1.0505 0.00056072 533.7881366888855 72.039 0.29961 72.078 71.871 72.171 0.039024 34 14 4 0 0 0 0.11784 1 39690 39690 31.268 15.119 1 13903000 52854 2406 35661 36463 61389 61389 0.030571626801247476 RLFEGNALL 9 Unmodified _RLFEGNALL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.796142578125 2 516.795466 1031.57638 0.42842 0.0002214 0.064696 3.3435E-05 0.49311 0.00025484 516.795539362505 61.994 0.35844 61.507 61.345 61.704 -0.48764 51 16 4 0 0 0 0.085319 2 33721 33721;33828 36.506 14.76 1 30111000 52855 8038 35662 36464 61390;61391 61390 0.06185449197187154 RLFEGNALL 9 Unmodified _RLFEGNALL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3045043945312 2 516.795466 1031.57638 0.37564 0.00019413 4.3375 0.0022416 4.7131 0.0024357 516.7958801905202 61.606 0.27612 61.573 61.415 61.691 -0.032787 32 13 3 0 0 0 0.18144 1 33611 33611 24.991 5.552 1 10267000 52856 8038 35662 36464 61392 61392 0.06185449197187154 RLFEGNALL 9 Unmodified _RLFEGNALL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.795466 1031.57638 0.25798 0.00013332 0.18712 9.6703E-05 0.4451 0.00023003 516.7954338706987 61.689 0.15902 61.689 61.548 61.707 0 0.099539 -2.301E-05 NaN 36.506 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 699690 52857 8038 35662 36464 0.06185449197187154 RLFENYIEL 9 Unmodified _RLFENYIEL_ 0 0 0 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8197631835938 2 598.819138 1195.62372 0.81905 0.00049046 0.61744 0.00036974 1.4365 0.0008602 598.8197450177652 95.768 0.28253 89.593 89.431 89.714 -6.1757 38 17 3 0 0 0 0.033747 1 63459 63459 57.722 19.546 1 29853000 52858 2908 35663 36465 61393 61393 0.03373683677500594 RLFEQESVE 9 Unmodified _RLFEQESVE_ 0 0 0 REV__ENST00000493482.1_1_X:151996387-151997293:-|nuORF REV__ENST00000493482.1_1_X:151996387-151997293:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5244140625 3 379.524261 1135.55095 0.73676 0.00027962 1.1408 0.00043295 1.8775 0.00071257 379.52459262125825 22.825 0.18767 20.046 19.945 20.132 -2.7784 22 14 2 0 0 0 0.43463 1 12288 12288 7.1017 0 1 2735700 + 52859 20887 35664 36466 61394 61394 -0.011400701159118398 RLFGCYIEL 9 Carbamidomethyl (C) _RLFGC(Carbamidomethyl (C))YIEL_ RLFGC(1)YIEL RLFGC(50)YIEL 0 1 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.80224609375 2 585.802434 1169.59032 0.54735 0.00032064 -0.57018 -0.00033401 -0.022835 -1.3377E-05 585.8021943842859 73.692 0.29842 73.736 73.545 73.843 0.043976 40 13 4 0 0 0 0.039985 1 40574 40574 49.933 49.933 1 7444800 52860 8296;16388 35665 36467 61395 61395 796 0.01230358633938522 RLFGCYIEL 9 Carbamidomethyl (C) _RLFGC(Carbamidomethyl (C))YIEL_ RLFGC(1)YIEL RLFGC(68)YIEL 0 1 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8028564453125 2 585.802434 1169.59032 1.2049 0.00070584 0.71061 0.00041628 1.9155 0.0011221 585.8023060265659 97.177 0.41489 91.001 90.722 91.137 -6.1757 62 23 3 0 0 0 0.015445 2 64309 64309;64430 68.081 32.037 1 83310000 52861 8296;16388 35665 36467 61396;61397 61396 796 0.01230358633938522 RLFGGGTI 8 Unmodified _RLFGGGTI_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.7377014160156 2 410.73742 819.460287 0.5265 0.00021625 -0.047505 -1.9512E-05 0.47899 0.00019674 410.737543462758 27.601 0.10694 27.554 27.512 27.619 -0.046408 6 4 2 0 0 0 0.70294 1 14252 14252 16.942 0 1 3061700 + 52862 22709 35666 36468 61398 61398 0.043335504171295725 RLFHKTVY 8 Unmodified _RLFHKTVY_ 0 0 0 nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24;ENST00000397776.2_1_1:158424733-158425060:+|nuORF nc|ENSG00000149547|O14681-3|EI24 nc|ENSG00000149547|O14681-3|EI24 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7850341796875 2 532.306001 1062.59745 0.45112 0.00024013 -0.29943 -0.00015939 0.15169 8.0744E-05 532.3059722543805 68.662 0.34818 68.662 68.463 68.811 0 37 15 3 0 0 0 8.7369 1 38173 38173 2.8892 0 1 1508400 52863 6018 35667 36469 61399 61399 0.06865459296705012 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24;ENST00000397776.2_1_1:158424733-158425060:+|nuORF nc|ENSG00000149547|O14681-3|EI24 nc|ENSG00000149547|O14681-3|EI24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.9008483886719 3 392.901114 1175.68151 -0.36078 -0.00014175 0.018694 7.3447E-06 -0.34208 -0.00013441 393.2354724298492 31.757 0.23874 31.787 31.648 31.887 0.030106 21 10 3 0 0 0 0.1685 1 16643 16643 26.268 16.118 1 2901000 52864 6018 35668 36470 61400 61400 0.10069990393617445 RLFHKTVYL 9 Unmodified _RLFHKTVYL_ 0 0 0 nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24;ENST00000397776.2_1_1:158424733-158425060:+|nuORF nc|ENSG00000149547|O14681-3|EI24 nc|ENSG00000149547|O14681-3|EI24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.199951171875 3 392.901114 1175.68151 1.4526 0.00057072 -0.28928 -0.00011366 1.1633 0.00045707 392.900758055064 89.162 0.22943 82.987 82.846 83.076 -6.1757 16 12 2 0 0 0 0.20883 1 58764 58764 8.1555 2.8586 1 6893400 52865 6018 35668 36470 61401 61401 0.10069990393617445 RLFIKMRP 8 Unmodified _RLFIKMRP_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8260498046875 2 530.826047 1059.63754 NaN NaN NaN NaN NaN NaN NaN 102.49 1 102.44 101.94 102.94 -0.045853 0 0 0 0.97444 1 56927 56927 0.69038 0 1 + 52866 19912 35669 36471 61402 61402 0.11010682695632568 RLFKMPREP 9 Unmodified _RLFKMPREP_ 0 0 0 REV__ENST00000488474.1_1_7:736619-751142:-|nuORF REV__ENST00000488474.1_1_7:736619-751142:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.874755859375 3 391.890221 1172.64883 0.5893 0.00023094 0.5464 0.00021413 1.1357 0.00044507 391.8906574816875 17.068 0.11617 14.481 14.415 14.531 -2.5866 27 22 2 0 0 0 0.21144 1 8875 8875 7.1017 0 1 1730900 + 52867 23697 35670 36472 61403 61403 0.06941459999097788 RLFLFRRLRRR 11 Unmodified _RLFLFRRLRRR_ 0 0 0 ENST00000368655.4_1_1:153800818-153895301:-|nuORF ENST00000368655.4_1_1:153800818-153895301:-|nuORF ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.677978515625 3 530.342693 1588.00625 1.5673 0.00083118 -1.1708 -0.00062093 0.39644 0.00021025 530.6766245240899 104.21 0.086746 98.032 97.983 98.069 -6.1757 9 5 3 0 0 0 0.74203 1 69811 69811 0.08335 0.08335 1 10345000 52868 12277 35671 36473 61404 61404 0.23576775321066634 RLFLFRRLRRR 11 Unmodified _RLFLFRRLRRR_ 0 0 0 ENST00000368655.4_1_1:153800818-153895301:-|nuORF ENST00000368655.4_1_1:153800818-153895301:-|nuORF ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.6776733398438 3 530.342693 1588.00625 1.5668 0.00083092 -1.119 -0.00059346 0.44775 0.00023746 530.3417926890262 104.93 0.10342 98.751 98.67 98.773 -6.1757 22 7 4 0 0 0 0.74203 1 70213 70213 0.08335 0.08335 1 37475000 52869 12277 35671 36473 61405 61405 0.23576775321066634 RLFLKAQAL 9 Unmodified _RLFLKAQAL_ 0 0 0 nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000590444.5_1_19:6471408-6475578:-|nuORF nc|ENSG00000205744|Q8IV53-2|DENND1C nc|ENSG00000205744|Q8IV53-2|DENND1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.3368530273438 2 530.337301 1058.66005 1.5669 0.00083099 -2.0039 -0.0010627 -0.437 -0.00023176 530.3364482925232 104.69 0.14934 98.511 98.417 98.566 -6.1757 23 9 3 0 0 0 0.58865 1 70117 70117 2.0598 1.3694 1 20017000 52870 10379 35672 36474 61406 61406 0.13306605364869029 RLFLNKIHVL 10 Unmodified _RLFLNKIHVL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20221201_MKP_PDAC_01 4 418.2671203613281 3 418.267797 1251.78156 NaN NaN NaN NaN NaN NaN NaN 95.2 1 89.024 88.524 89.524 -6.1757 0 0 0 0.94985 1 63056 63056 5.7834 0.38072 1 52871 4022 35673 36475 61407 61407 0.16574227727414836 RLFPDLLAR 9 Unmodified _RLFPDLLAR_ 0 0 0 REV__ENSG00000234409|ENST00000439765|CCDC188 REV__ENSG00000234409|ENST00000439765|CCDC188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5568237304688 3 367.557348 1099.65021 0.14156 5.2032E-05 0.77564 0.00028509 0.9172 0.00033712 367.557510533362 54.576 0.3045 54.51 54.359 54.663 -0.066936 26 14 2 0 0 0 0.1685 1 29595 29595 26.268 1.2772 1 9546300 + 52872 24417 35674 36476 61408 61408 0.10437417359503343 RLFRMLRIF 9 Unmodified _RLFRMLRIF_ 0 0 0 ENSG00000136546|ENST00000643258|SCN7A ENSG00000136546|ENST00000643258|SCN7A ENSG00000136546|ENST00000643258|SCN7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9234008789062 3 417.921744 1250.7434 3.035 0.0012684 -2.0773 -0.00086814 0.95776 0.00040027 417.9207750395701 99.687 0.48843 99.651 99.529 100.02 -0.036301 54 17 6 0 0 0 0.61855 1 55337 55337 0.23584 0 1 169840000 52873 4836 35675 36477 61409 61409 0.1280601854109591 RLFRTKVW 8 Unmodified _RLFRTKVW_ 0 0 0 ENSG00000100739|ENST00000216629|BDKRB1 ENSG00000100739|ENST00000216629|BDKRB1 ENSG00000100739|ENST00000216629|BDKRB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.5252075195312 3 369.225821 1104.65563 1.4183 0.00052367 -1.6268 -0.00060065 -0.20849 -7.6981E-05 369.22534765437905 40.615 0.401 36.086 35.889 36.29 -4.5294 40 24 2 0 0 0 8.7369 1 24329 24329 3.9444 0.3479 1 11535000 52874 1870 35676 36478 61410 61410 0.10749140941993574 RLFRWEREKRI 11 Unmodified _RLFRWEREKRI_ 0 0 0 REV__nc|ENSG00000141564|Q8N122-3|RPTOR REV__nc|ENSG00000141564|Q8N122-3|RPTOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.310546875 3 530.310947 1587.91101 NaN NaN NaN NaN NaN NaN NaN 99.894 1 99.736 99.236 100.24 -0.1575 0 0 0 0.9435 1 54532 54532 0 0 1 + 52875 20545 35677 36479 61411 61411 0.14057377339395316 RLFRWLYEKFR 11 Unmodified _RLFRWLYEKFR_ 0 0 0 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4564208984375 2 807.456802 1612.89905 NaN NaN NaN NaN NaN NaN NaN 92.022 1 92.052 91.552 92.552 0.030197 0 0 0 0.9435 1 51176 51176 0 0 1 52876 7681 35678 36480 61412 61412 0.11711760596176646 RLFRWLYEKFR 11 Unmodified _RLFRWLYEKFR_ 0 0 0 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 ENSG00000167904|ENST00000434581|TMEM68 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5578308105469 4 404.232039 1612.89905 -0.097573 -3.9442E-05 0.72691 0.00029384 0.62934 0.0002544 404.23090080490664 19.998 0.60704 20.006 19.779 20.386 0.0078487 50 32 3 0 0 0 0.30604 1 10135 10135 0.094841 0.094841 1 1235000 52877 7681 35678 36480 61413 61413 0.11711760596176646 RLFSLCRTW 9 Unmodified _RLFSLCRTW_ 0 0 0 ENST00000435504.8_1_2:25964298-25964478:-|nuORF ENST00000435504.8_1_2:25964298-25964478:-|nuORF ENST00000435504.8_1_2:25964298-25964478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5464477539062 3 394.546454 1180.61753 0.43654 0.00017223 -0.83563 -0.0003297 -0.3991 -0.00015746 394.8804122886853 55.557 0.31445 55.079 55.005 55.32 -0.47798 18 14 2 0 0 0 0.56345 1 30149 30149 2.086 0 1 1246800 52878 13313 35679 36481 61414 61414 0.03444886965007754 RLFSSIVTV 9 Unmodified _RLFSSIVTV_ 0 0 0 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.3084411621094 2 511.305667 1020.59678 1.0021 0.00051237 2.6302 0.0013448 3.6322 0.0018572 511.30698817532857 91.966 0.48608 85.79 85.435 85.921 -6.1757 59 27 3 0 0 0 0.21643 1 60788 60788 21.537 3.3906 1 29137000 52879 7594 35680 36482 61415 61415 0.08730619857010424 RLFSVPHVV 9 Unmodified _RLFSVPHVV_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.313232421875 2 527.313826 1052.6131 0.55075 0.00029042 0.25819 0.00013615 0.80894 0.00042657 527.3134878220218 52.259 0.20154 52.2 52.087 52.289 -0.058918 12 9 2 0 0 0 0.098164 1 28313 28313 29.082 14.5 1 1929600 52880 1751 35681 36483 61416 61416 0.08889745813735317 RLFWEHFI 8 Unmodified _RLFWEHFI_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MSMS AL20221201_MKP_PDAC_01 4 383.2078857421875 3 383.206426 1146.59745 NaN NaN NaN NaN NaN NaN NaN 95.997 1 89.821 89.321 90.321 -6.1757 0 0 0 0.9192 1 63598 63598 16.942 8.498 1 + 52881 22834 35682 36484 61417 61417 0.030014592967063436 RLFWHMDQQNR 11 Unmodified _RLFWHMDQQNR_ 0 0 0 ENSG00000111701|ENST00000229304|APOBEC1 ENSG00000111701|ENST00000229304|APOBEC1 ENSG00000111701|ENST00000229304|APOBEC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.9142150878906 3 510.91761 1529.731 NaN NaN NaN NaN NaN NaN NaN 20.831 1 20.831 20.331 21.331 0 0 0 0 0.94181 1 10501 10501 1.2148 0.70888 1 52882 2817 35683 36485 61418 61418 -0.012676696599100978 RLGAVAHA 8 Unmodified _RLGAVAHA_ 0 0 0 ENST00000383790.7_1_3:15452636-15452750:-|nuORF;ENST00000473145.5_1_3:52448663-52448807:+|nuORF;ENST00000216264.12_1_22:47081202-47081484:-|nuORF;ENST00000489264.2_1_10:75533373-75538679:+|nuORF ENST00000383790.7_1_3:15452636-15452750:-|nuORF ENST00000383790.7_1_3:15452636-15452750:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.7348937988281 2 397.735212 793.455871 -0.5202 -0.0002069 -0.32449 -0.00012906 -0.84469 -0.00033596 397.73508788709194 25.804 0.20561 25.804 25.634 25.84 0 13 9 2 0 0 0 0.80624 1 13233 13233 2.8892 0 1 1077000 52883 11009 35684 36486 61419 61419 0.05088085994213998 RLGCFNLTV 9 Carbamidomethyl (C) _RLGC(Carbamidomethyl (C))FNLTV_ RLGC(1)FNLTV RLGC(68)FNLTV 0 1 0 nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000523334.1_1_6:114270077-114270239:-|nuORF nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.287353515625 2 540.286951 1078.55935 0.2889 0.00015609 -0.56155 -0.0003034 -0.27265 -0.00014731 540.2867216412575 62.164 0.25441 62.131 61.985 62.239 -0.032787 31 12 3 0 0 0 0.015445 1 33927 33927 68.081 22.06 1 36465000 52884 9847 35685 36487 61420 61420 900 0.02321205319708497 RLGEVVQPKR 10 Unmodified _RLGEVVQPKR_ 0 0 0 REV__ENSG00000128731|ENST00000261609|HERC2;REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF REV__ENSG00000128731|ENST00000261609|HERC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.575439453125 3 394.57529 1180.70404 -0.23213 -9.1591E-05 0.11227 4.4299E-05 -0.11986 -4.7292E-05 394.57548675643466 33.679 0.45313 33.52 33.196 33.649 -0.15918 43 18 4 0 0 0 0.70895 1 17639 17639 1.9064 0.1641 1 10522000 + 52885 19632;28966 35686 36488 61421 61421 0.12091589791225488 RLGGGPPP 8 Unmodified _RLGGGPPP_ 0 0 0 REV__nc|ENSG00000185513|Q9Y468|L3MBTL1 REV__nc|ENSG00000185513|Q9Y468|L3MBTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.7168884277344 2 375.716488 749.418422 -0.36302 -0.00013639 1.463 0.00054966 1.0999 0.00041327 375.7167513824073 22.35 0.15759 22.35 22.245 22.402 0 12 7 2 0 0 0 0.80975 1 11370 11370 0.79363 0 1 477690 + 52886 23504 35687 36489 61422 61422 0.033689947286120514 RLGLPLLV 8 Unmodified _RLGLPLLV_ 0 0 0 REV__ENSG00000139131|ENST00000324868|YARS2 REV__ENSG00000139131|ENST00000324868|YARS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8037109375 2 440.802563 879.590573 NaN NaN NaN NaN NaN NaN NaN 0.031229 1 -0.042691 -0.54269 0.45731 -0.07392 0 0 0 0.97444 1 15 15 0.79363 0 1 + 52887 20386 35688 36490 61423 61423 0.1459614641614735 RLGPLRNIL 9 Unmodified _RLGPLRNIL_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2302551269531 3 351.229342 1050.6662 0.28709 0.00010084 1.3859 0.00048675 1.6729 0.00058759 351.2297319640799 48.151 0.15647 48.112 48.047 48.203 -0.038643 13 7 2 0 0 0 0.58865 1 25985 25985 2.7352 1.6637 1 874010 + 52888 17830 35689 36491 61424 61424 0.1428912359642709 RLGPVPPGL 9 Unmodified _RLGPVPPGL_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.2818298339844 2 453.281995 904.549437 0.5184 0.00023498 0.46131 0.0002091 0.97971 0.00044408 453.28231645100095 50.948 0.55781 50.894 50.708 51.266 -0.053871 44 27 2 0 0 0 0.2143 1 27649 27649 21.747 5.8995 1 1729600 52889 5800 35690 36492 61425 61425 0.09334385376666887 RLGPVPPGL 9 Unmodified _RLGPVPPGL_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037-3|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.281982421875 2 453.281995 904.549437 0.81139 0.00036779 -0.76639 -0.00034739 0.045001 2.0398E-05 453.281787108618 57.005 0.32635 51.028 50.773 51.1 -5.9769 25 19 2 0 0 0 0.16226 1 36453 36453 26.884 7.4447 1 14234000 52890 5800 35690 36492 61426 61426 0.09334385376666887 RLGRCYNLYM 10 Unmodified _RLGRCYNLYM_ 0 0 0 REV__nc|ENSG00000113712|P48729-3|CSNK1A1 REV__nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2137756347656 3 430.214487 1287.62163 0.52529 0.00022599 -1.6856 -0.00072519 -1.1604 -0.0004992 430.21353072377025 39.767 0.32636 35.25 35.057 35.383 -4.5166 53 20 3 0 0 0 0.6606 1 23609 23609 3.8763 0.28927 1 37478000 + 52891 18885 35691 36493 61427 61427 -0.010673916036012088 RLGYKDLFL 9 Unmodified _RLGYKDLFL_ 0 0 0 REV__nc|ENSG00000110911|P49281-5|SLC11A2 REV__nc|ENSG00000110911|P49281-5|SLC11A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5543212890625 3 375.553603 1123.63898 0.40934 0.00015373 0.38942 0.00014625 0.79875 0.00029997 375.55419834470047 48.022 0.25276 47.983 47.89 48.142 -0.038643 27 12 3 0 0 0 0.27545 1 25894 25894 18.373 0 1 1747100 + 52892 18728 35692 36494 61428 61428 0.08210595265359188 RLGYMWPP 8 Unmodified _RLGYMWPP_ 0 0 0 REV__ENSG00000171488|ENST00000370454|LRRC8C REV__ENSG00000171488|ENST00000370454|LRRC8C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2601623535156 2 510.260205 1018.50586 NaN NaN NaN NaN NaN NaN NaN 14.694 1 14.694 14.194 15.194 0 0 0 0 0.97444 1 7008 7008 0.79363 0 1 + 52893 22565 35693 36495 61429 61429 -0.002655473921322482 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8810119628906 3 374.880379 1121.61931 0.16 5.998E-05 0.15749 5.9042E-05 0.31749 0.00011902 374.8805840835376 43.207 0.2198 43.207 43.121 43.341 0 20 10 2 0 0 0 0.2324 1 23473 23473 14.957 8.7653 1 4816000 52894 2145 35694 36496 61430 61430 0.06336219254626485 RLHDENILL 9 Unmodified _RLHDENILL_ 0 0 0 nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.8173217773438 2 561.81693 1121.61931 0.45384 0.00025497 0.5572 0.00031304 1.011 0.00056802 561.8174991948939 43.221 0.23914 43.221 43.102 43.341 0 16 11 2 0 0 0 0.15471 1 23478 23478 27.629 8.3718 1 3291900 52895 2145 35694 36496 61431 61431 0.06336219254626485 RLHDNVHAV 9 Unmodified _RLHDNVHAV_ 0 0 0 ENSG00000173156|ENST00000308831|RHOD ENSG00000173156|ENST00000308831|RHOD ENSG00000173156|ENST00000308831|RHOD MSMS AL20221201_MKP_PDAC_01 4 354.1921997070312 3 354.193068 1059.55738 NaN NaN NaN NaN NaN NaN NaN 16.025 1 13.468 12.968 13.968 -2.557 0 0 0 0.72888 1 8271 8271 8.4443 3.1474 1 52896 8292 35695 36497 61432 61432 0.029979126261423517 RLHEKFHGF 9 Unmodified _RLHEKFHGF_ 0 0 0 REV__nc|ENSG00000172262|P52739-2|ZNF131 REV__nc|ENSG00000172262|P52739-2|ZNF131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.4232177734375 2 585.811982 1169.60941 0.40453 0.00023698 0.69506 0.00040718 1.0996 0.00064415 585.812297617692 85.245 1.5706 84.744 84.2 85.771 -0.5015 405 91 6 0 0 0 0.55144 1 46625 46625 4.3292 4.3292 1 525020000 + 52897 22636 35696 36498 61433 61433 0.03139076039883548 RLHEKIQEA 9 Unmodified _RLHEKIQEA_ 0 0 0 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 ENSG00000148296|ENST00000372022|SURF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2125854492188 3 375.212128 1122.61456 0.6898 0.00025882 0.21747 8.1599E-05 0.90728 0.00034042 375.21210748680306 14.987 0.14832 12.459 12.381 12.53 -2.5273 45 25 2 0 0 0 0.52844 1 7623 7623 3.5871 1.5011 1 2901100 52898 5912 35697 36499 61434 61434 0.058153351118335195 RLHERLVAI 9 Unmodified _RLHERLVAI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.5645446777344 3 369.564614 1105.67201 0.3178 0.00011745 0.32473 0.00012001 0.64253 0.00023746 369.5646150812673 31.102 0.27174 30.999 30.864 31.136 -0.10269 24 10 3 0 0 0 0.080011 1 16134 16134 37.771 3.5496 1 6943400 52899 16412 35698 36500 61435 61435 0.12340222108082344 RLHERLVAI 9 Unmodified _RLHERLVAI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5648193359375 3 369.564614 1105.67201 -0.19143 -7.0747E-05 0.75649 0.00027957 0.56505 0.00020882 369.5648884971227 30.86 0.32199 30.891 30.737 31.059 0.030106 37 13 4 0 0 0 0.073961 1 16125 16125 39.213 3.6007 1 17805000 52900 16412 35698 36500 61436 61436 0.12340222108082344 RLHGLKAS 8 Unmodified _RLHGLKAS_ 0 0 0 nc|ENSG00000100523|Q8NEL9-2|DDHD1;nc|ENSG00000100523|Q8NEL9-4|DDHD1;ENSG00000100523|ENST00000673822|DDHD1;ENST00000555400.1_1_14:53521153-53527951:-|nuORF;nc|ENSG00000100523|Q8NEL9-3|DDHD1 nc|ENSG00000100523|Q8NEL9-2|DDHD1 nc|ENSG00000100523|Q8NEL9-2|DDHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2325134277344 2 441.269419 880.524284 0.19859 8.7631E-05 -0.87971 -0.00038819 -0.68113 -0.00030056 441.2692660941434 30.368 0.179 30.398 30.255 30.434 0.030106 11 7 2 0 0 0 8.7369 1 15828 15828 2.0598 0 1 855320 52901 1840 35699 36501 61437 61437 0.07924330574087435 RLHKCRLCY 9 Unmodified _RLHKCRLCY_ 0 0 0 ENSG00000140854|ENST00000379661|KATNB1 ENSG00000140854|ENST00000379661|KATNB1 ENSG00000140854|ENST00000379661|KATNB1 MSMS AL20221201_MKP_PDAC_01 4 398.2096862792969 3 397.879439 1190.61649 NaN NaN NaN NaN NaN NaN NaN 3.8537 1 1.3717 0.87172 1.8717 -2.482 0 0 0 0.85737 1 1956 1956 0.26902 0.12913 1 52902 5276 35700 36502 61438 61438 0.028803493244595302 RLHLKEPP 8 Unmodified _RLHLKEPP_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7627258300781 2 495.298176 988.581799 0.54301 0.00026895 -1.0588 -0.00052444 -0.51582 -0.00025549 495.2975070503491 49.814 0.27074 49.814 49.716 49.986 0 29 12 3 0 0 0 8.7369 1 27536 27536 12.532 0 1 6043800 52903 761 35701 36503 61439 61439 0.08705172779650638 RLHLKKTL 8 Unmodified _RLHLKKTL_ 0 0 0 REV__ENST00000472940.5_1_17:58003798-58008230:+|nuORF REV__ENST00000472940.5_1_17:58003798-58008230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8395385742188 2 504.837468 1007.66038 1.2582 0.00063518 0.18587 9.3835E-05 1.4441 0.00072901 504.8375913062468 94.412 0.32655 88.236 88.045 88.372 -6.1757 41 18 3 0 0 0 0.64853 1 62476 62476 21.747 0 1 40669000 + 52904 27528 35702 36504 61440 61440 0.15686025084755784 RLHMCCPVP 9 Unmodified _RLHMCCPVP_ 0 0 0 REV__ENST00000555173.1_1_12:57629348-57630441:-|nuORF REV__ENST00000555173.1_1_12:57629348-57630441:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2510375976562 2 528.251 1054.48745 NaN NaN NaN NaN NaN NaN NaN 6.1363 1 6.0517 5.5517 6.5517 -0.08463 0 0 0 0.8622 1 3029 3029 0 0 1 + 52905 28765 35703 36505 61441 61441 -0.03761748629995054 RLHPSRSP 8 Unmodified _RLHPSRSP_ 0 0 0 ENST00000513140.5_1_4:40946930-40947002:-|nuORF ENST00000513140.5_1_4:40946930-40947002:-|nuORF ENST00000513140.5_1_4:40946930-40947002:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 950.541259765625 1 949.532624 948.525347 0.54352 0.00051609 1.5351 0.0014577 2.0786 0.0019737 949.5351095971824 64.453 0.19288 63.968 63.867 64.059 -0.48512 11 8 2 0 0 0 0.80722 1 35209 35209 2.3027 0 1 640740 52906 14632 35704 36506 61442 61442 0.04902544943001885 RLHQINIYL 9 Unmodified _RLHQINIYL_ 0 0 0 ENSG00000119514|ENST00000375011|GALNT12 ENSG00000119514|ENST00000375011|GALNT12 ENSG00000119514|ENST00000375011|GALNT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5643005371094 3 390.564502 1168.67168 -0.11333 -4.4263E-05 -0.45981 -0.00017959 -0.57314 -0.00022385 390.56441619086985 51.176 0.21994 51.123 51.007 51.226 -0.053875 19 10 2 0 0 0 0.23158 1 27705 27705 19.362 7.8672 1 1649500 52907 3441 35705 36507 61443 61443 0.09408802388225013 RLHRELVAL 9 Unmodified _RLHRELVAL_ 0 0 0 REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5644836425781 3 369.564614 1105.67201 -0.19143 -7.0747E-05 0.75649 0.00027957 0.56505 0.00020882 369.5648884971227 30.86 0.32199 30.891 30.737 31.059 0.030106 37 13 4 0 0 0 0.48396 1 16227 16227 8.4443 0 1 17805000 + 52908 23318 35706 36508 61444 61444 0.12340222108082344 RLHRELVAL 9 Unmodified _RLHRELVAL_ 0 0 0 REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5650939941406 3 369.564614 1105.67201 1.5271 0.00056437 -1.2342 -0.0004561 0.29297 0.00010827 369.5646846178992 35.611 0.39684 31.418 31.252 31.648 -4.1928 45 24 2 0 0 0 0.08907 1 20668 20668 35.612 0 1 20847000 + 52909 23318 35706 36508 61445 61445 0.12340222108082344 RLHRELVAL 9 Unmodified _RLHRELVAL_ 0 0 0 REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF REV__ENST00000608763.1_1_13:114524697-114525165:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5662536621094 3 369.564614 1105.67201 1.4705 0.00054344 0.041628 1.5384E-05 1.5121 0.00055882 369.56464270846607 85.839 0.44476 79.663 79.479 79.924 -6.1757 59 24 3 0 0 0 0.19349 1 56515 56515 23.801 0 1 38880000 + 52910 23318 35706 36508 61446 61446 0.12340222108082344 RLHRGEKSY 9 Unmodified _RLHRGEKSY_ 0 0 0 nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 nc|ENSG00000181722|Q9HC78-2|ZBTB20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.311767578125 2 573.312346 1144.61014 0.80771 0.00046307 0.59125 0.00033897 1.399 0.00080204 573.3127448345191 50.766 0.80461 50.353 50.051 50.856 -0.41351 75 39 3 0 0 0 0.39863 1 27461 27461 12.532 3.9383 1 13440000 52911 8991 35707 36509 61447 61447 0.04361870688944691 RLHRRRPRG 9 Unmodified _RLHRRRPRG_ 0 0 0 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 MSMS AL20221201_MKP_PDAC_01 4 602.3765869140625 2 602.373938 1202.73332 NaN NaN NaN NaN NaN NaN NaN 106.74 1 100.57 100.07 101.07 -6.1757 0 0 0 0.85798 1 71435 71435 0.52476 0 1 52912 16425 35708 36510 61448 61448 0.14006591650718292 RLIAQRYLL 9 Unmodified _RLIAQRYLL_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3606567382812 2 573.361308 1144.70806 0.3724 0.00021352 -0.41804 -0.00023969 -0.045641 -2.6169E-05 573.361064748166 48.394 0.29695 48.35 48.198 48.495 -0.04369 36 14 3 0 0 0 0.044296 1 26081 26081 52.268 20.151 1 20885000 52913 654 35709 36511 61449 61449 0.14149679284946615 RLIAQRYLL 9 Unmodified _RLIAQRYLL_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5769958496094 3 382.576631 1144.70806 0.32321 0.00012365 -0.68569 -0.00026233 -0.36248 -0.00013868 382.57617413745663 48.393 0.51246 48.35 47.983 48.495 -0.04369 51 25 4 0 0 0 0.037253 1 26083 26083 51.415 27.625 1 16766000 52914 654 35709 36511 61450 61450 0.14149679284946615 RLIAQRYLL 9 Unmodified _RLIAQRYLL_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8624267578125 2 573.361308 1144.70806 1.0661 0.00061127 -0.069148 -3.9647E-05 0.99697 0.00057162 573.3611086212538 85.909 0.60511 79.734 79.513 80.118 -6.1757 58 33 2 0 0 0 0.015688 2 56532 56532;56671 85.272 39.251 1 16910000 52915 654 35709 36511 61451;61452 61451 0.14149679284946615 RLIAQRYLL 9 Unmodified _RLIAQRYLL_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5770263671875 3 382.576631 1144.70806 1.438 0.00055016 -0.3116 -0.00011921 1.1264 0.00043095 382.57658447163857 85.814 0.69102 79.638 79.445 80.136 -6.1757 84 38 3 0 0 0 0.0082548 3 56537 56537;56667;56837 96.367 54.411 1 14831000 52916 654 35709 36511 61453;61454;61455 61453 0.14149679284946615 RLIDLGVGL 9 Unmodified _RLIDLGVGL_ 0 0 0 ENSG00000117139|ENST00000367265|KDM5B;nc|ENSG00000117139|Q9UGL1-2|KDM5B ENSG00000117139|ENST00000367265|KDM5B ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3014221191406 2 478.300384 954.586216 1.324 0.00063327 0.24649 0.0001179 1.5705 0.00075116 478.30072962887033 95.961 0.40737 89.785 89.618 90.025 -6.1757 43 24 3 0 0 0 0.078314 1 63506 63506 38.176 5.3899 1 15731000 52917 3283 35710 36512 61456 61456 0.10710637202555517 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7982788085938 2 523.298039 1044.58152 0.40728 0.00021313 -0.028346 -1.4833E-05 0.37894 0.0001983 523.2980440434026 43.334 0.40466 43.334 43.121 43.526 0 62 19 4 0 0 0 0.023481 1 23455 23455 60.074 21.898 1 76090000 52918 583 35711 36513 61457 61457 0.061017082691250835 RLIEESVTV 9 Unmodified _RLIEESVTV_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2992553710938 2 523.298039 1044.58152 1.2347 0.00064611 -0.48261 -0.00025255 0.75207 0.00039356 523.297751716066 49.613 0.58348 44.074 43.793 44.377 -5.5391 92 36 3 0 0 0 0.085319 1 31142 31142 36.506 5.8697 1 152460000 52919 583 35711 36513 61458 61458 0.061017082691250835 RLIEETISI 9 Unmodified _RLIEETISI_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.314208984375 2 537.313689 1072.61282 0.64176 0.00034482 0.024818 1.3335E-05 0.66657 0.00035816 537.3136730161967 57.271 0.33245 57.271 57.135 57.467 0 36 14 3 0 0 0 0.040683 1 31849 31849 49.554 11.379 1 15610000 52920 2585 35712 36514 61459 61459 0.07942281303257914 RLIEETISI 9 Unmodified _RLIEETISI_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1;ENST00000427274.6_1_17:28822526-28847071:+|nuORF nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3120727539062 2 537.313689 1072.61282 0.29753 0.00015987 -1.6923 -0.00090927 -1.3947 -0.00074941 537.3127570297345 57.767 0.22315 57.277 57.126 57.35 -0.48974 17 10 2 0 0 0 0.085319 1 31357 31357 36.506 5.2379 1 3233500 52921 2585 35712 36514 61460 61460 0.07942281303257914 RLIEQEEYL 9 Unmodified _RLIEQEEYL_ 0 0 0 ENST00000462668.5_1_3:160131924-160151594:+|nuORF;nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4 ENST00000462668.5_1_3:160131924-160151594:+|nuORF ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.813232421875 2 596.814053 1191.61355 0.59446 0.00035478 1.0597 0.00063242 1.6541 0.0009872 596.8158849581577 46.33 0.22889 46.33 46.232 46.461 0 24 10 3 0 0 0 0.18144 1 25325 25325 24.991 11.948 1 3403400 52922 3003 35713 36515 61461 61461 0.02541075952308347 RLIESLFTI 9 Unmodified _RLIESLFTI_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3274536132812 2 546.326599 1090.63865 0.92183 0.00050362 0.74567 0.00040738 1.6675 0.000911 546.3269215714903 82.761 0.46534 82.823 82.61 83.075 0.062004 57 17 4 0 0 0 0.0094097 2 45739 45739;45833 82.529 17.294 1 37976000 52923 1209 35714 36516 61462;61463 61462 0.09695175545539314 RLIESLFTI 9 Unmodified _RLIESLFTI_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.326599 1090.63865 0.35642 0.00019472 0.031798 1.7372E-05 0.38822 0.00021209 546.3267318897621 83.533 0.23598 83.035 82.914 83.15 -0.49751 0.10605 -0.00063901 NaN 82.529 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 307120 52924 1209 35714 36516 0.09695175545539314 RLIFKRVK 8 Unmodified _RLIFKRVK_ 0 0 0 REV__ENSG00000115956|ENST00000234313|PLEK REV__ENSG00000115956|ENST00000234313|PLEK MSMS AL20221201_MKP_PDAC_01 4 530.3609008789062 2 530.361111 1058.70767 NaN NaN NaN NaN NaN NaN NaN 105.81 1 99.632 99.132 100.13 -6.1757 0 0 0 0.97444 1 70868 70868 0.69038 0 1 + 52925 19016 35715 36517 61464 61464 0.18066304355738794 RLIGDAAKNQV 11 Unmodified _RLIGDAAKNQV_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.563232421875 3 395.56305 1183.66732 0.67369 0.00026649 0.086061 3.4043E-05 0.75975 0.00030053 395.5630483637919 26.594 0.23217 23.643 23.481 23.713 -2.9511 20 11 2 0 0 0 0.016317 1 14643 14643 44.207 22.965 1 7019100 52926 10277;2688 35716 36518 61465 61465 0.08283293174645223 RLIKEDVYL 9 Unmodified _RLIKEDVYL_ 0 0 0 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8375854492188 2 574.837331 1147.66011 1.0221 0.00058755 -0.32656 -0.00018772 0.69556 0.00039983 574.8370665114925 42.877 0.2487 42.877 42.737 42.985 0 37 12 4 0 0 0 0.060956 1 23214 23214 53.833 21.047 1 21699000 52927 1934 35717 36519 61466 61466 0.0921856057423156 RLIKEDVYL 9 Unmodified _RLIKEDVYL_ 0 0 0 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1981201171875 3 383.560646 1147.66011 0.69068 0.00026492 -0.65461 -0.00025108 0.036067 1.3834E-05 383.56030095880476 42.879 0.22948 42.879 42.737 42.966 0 29 11 3 0 0 0 0.17716 1 23233 23233 22.658 4.285 1 7843300 52928 1934 35717 36519 61467 61467 0.0921856057423156 RLIKEDVYL 9 Unmodified _RLIKEDVYL_ 0 0 0 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3388671875 2 574.837331 1147.66011 0.31019 0.00017831 0.29971 0.00017228 0.60989 0.00035059 574.8375562349495 43.031 0.20783 42.721 42.634 42.842 -0.31039 15 9 2 0 0 0 0.040733 1 22893 22893 53.833 31.097 1 6479200 52929 1934 35717 36519 61468 61468 0.0921856057423156 RLIKEDVYL 9 Unmodified _RLIKEDVYL_ 0 0 0 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8379516601562 2 574.837331 1147.66011 1.0887 0.00062581 -0.15899 -9.1396E-05 0.92968 0.00053441 574.837272053133 48.543 0.34886 43.147 42.925 43.273 -5.3961 42 20 3 0 0 0 0.060956 1 30254 30254 45.7 22.963 1 30725000 52930 1934 35717 36519 61469 61469 0.0921856057423156 RLIKLLIIN 9 Unmodified _RLIKLLIIN_ 0 0 0 REV__ENST00000532383.5_1_11:10828794-10828950:-|nuORF REV__ENST00000532383.5_1_11:10828794-10828950:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.9259338378906 3 365.92526 1094.75395 NaN NaN NaN NaN NaN NaN NaN 17.323 1 17.328 16.828 17.828 0.0050564 0 0 0 0.8622 1 8733 8733 0 0 1 + 52931 28460 35718 36520 61470 61470 0.210363244671953 RLILHRIV 8 Unmodified _RLILHRIV_ 0 0 0 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3476257324219 2 510.345461 1018.67637 1.3873 0.000708 -0.32563 -0.00016618 1.0617 0.00054182 510.345196423641 106.37 1.1381 100.2 99.727 100.87 -6.1757 339 192 2 0 0 0 0.81107 2 70952 70952;71599 0 0 1 13869000 52932 3312 35719 36521 61471;61472 61471 0.16777731321633382 RLILHRIV 8 Unmodified _RLILHRIV_ 0 0 0 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 MSMS AL20221201_MKP_PDAC_01 4 510.3464965820312 2 510.345461 1018.67637 NaN NaN NaN NaN NaN NaN NaN 107.2 1 101.03 100.53 101.53 -6.1757 0 0 0 0.97444 1 71719 71719 0 0 1 52933 3312 35719 36521 61473 61473 0.16777731321633382 RLINQVLEL 9 Unmodified _RLINQVLEL_ 0 0 0 ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC ENSG00000153130|ENST00000608372|SCOC ENSG00000153130|ENST00000608372|SCOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3374633789062 2 549.337498 1096.66044 0.5872 0.00032257 0.44297 0.00024334 1.0302 0.00056591 549.3377841739506 67.789 0.3338 67.307 67.142 67.475 -0.48218 40 14 4 0 0 0 0.033587 1 37001 37001 58.679 10.93 1 5100800 52934 6241 35720 36522 61474 61474 0.1159798029407284 RLINQVLEL 9 Unmodified _RLINQVLEL_ 0 0 0 ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC ENSG00000153130|ENST00000608372|SCOC ENSG00000153130|ENST00000608372|SCOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3372802734375 2 549.337498 1096.66044 0.4589 0.00025209 0.65477 0.00035969 1.1137 0.00061178 549.3380375909435 67.257 0.27055 67.275 67.143 67.414 0.018036 28 13 3 0 0 0 0.098164 1 36897 36897 36.127 8.4982 1 3624500 52935 6241 35720 36522 61475 61475 0.1159798029407284 RLINQVLEL 9 Unmodified _RLINQVLEL_ 0 0 0 ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC ENSG00000153130|ENST00000608372|SCOC ENSG00000153130|ENST00000608372|SCOC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.7874755859375 2 549.337498 1096.66044 1.2494 0.00068633 -1.3116 -0.00072053 -0.062256 -3.42E-05 549.3369787707651 95.513 0.21796 89.338 89.213 89.431 -6.1757 31 12 3 0 0 0 0.20554 1 63318 63318 9.3831 0 1 78308000 52936 6241 35720 36522 61476 61476 0.1159798029407284 RLIPSVIKYY 10 Unmodified _RLIPSVIKYY_ 0 0 0 REV__ENSG00000237521|ENST00000456448|OR7E24 REV__ENSG00000237521|ENST00000456448|OR7E24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.3824462890625 2 626.376623 1250.73869 3.2781 0.0020534 1.497 0.00093769 4.7752 0.002991 626.3773714564009 99.687 0.27014 99.651 99.529 99.799 -0.036301 32 9 5 0 0 0 0.7191 1 55346 55346 1.8442 1.2427 1 141920000 + 52937 24434 35721 36523 61477 61477 0.12335412879338037 RLIPSWTTV 9 Unmodified _RLIPSWTTV_ 0 0 0 ENSG00000004660|ENST00000348335|CAMKK1;nc|ENSG00000004660|Q8N5S9-2|CAMKK1 ENSG00000004660|ENST00000348335|CAMKK1 ENSG00000004660|ENST00000348335|CAMKK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.0509948730469 3 358.209836 1071.60768 0.043397 1.5545E-05 -0.24272 -8.6944E-05 -0.19932 -7.1399E-05 358.20925711984347 38.544 0.4272 38.561 38.336 38.763 0.01704 40 20 3 0 0 0 0.21806 1 20404 20404 2.7352 0 1 3886700 52938 278 35722 36524 61478 61478 0.07474022231258459 RLIPTLVSI 9 Unmodified _RLIPTLVSI_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3323974609375 2 506.331685 1010.64882 0.39437 0.00019968 0.32591 0.00016502 0.72028 0.0003647 506.33177403330217 74.821 0.34277 74.867 74.682 75.025 0.045959 42 15 3 0 0 0 0.044011 2 41206 41206;41313 47.749 17.112 1 8237900 52939 10126 35723 36525 61479;61480 61479 0.14391783270752967 RLIPTLVSI 9 Unmodified _RLIPTLVSI_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3322143554688 2 506.331685 1010.64882 1.2194 0.00061744 -0.4775 -0.00024177 0.74194 0.00037567 506.33135445539733 98.037 0.20818 91.861 91.716 91.924 -6.1757 28 12 3 0 0 0 0.0086722 1 64967 64967 88.954 17.82 1 66014000 52940 10126 35723 36525 61481 61481 0.14391783270752967 RLIQESPTL 9 Unmodified _RLIQESPTL_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.8056640625 2 528.806031 1055.59751 -0.10926 -5.7776E-05 -0.19801 -0.00010471 -0.30727 -0.00016248 528.8058387211335 41.588 0.34386 41.588 41.441 41.785 0 52 17 4 0 0 0 0.0081 2 22409 22409;22533 92.653 28.693 1 48881000 52941 2815 35724 36526 61482;61483 61482 0.07193414506036788 RLIQESPTL 9 Unmodified _RLIQESPTL_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8051147460938 2 528.806031 1055.59751 -0.33537 -0.00017735 -0.12042 -6.3681E-05 -0.45579 -0.00024103 528.8059923830765 41.882 0.22807 41.575 41.454 41.682 -0.30682 27 10 3 0 0 0 0.0085386 1 22203 22203 88.954 43.254 1 19713000 52942 2815 35724 36526 61484 61484 0.07193414506036788 RLIQESPTL 9 Unmodified _RLIQESPTL_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.806640625 2 528.806031 1055.59751 1.3762 0.00072775 -0.29171 -0.00015426 1.0845 0.00057349 528.8058339959767 47.807 0.59064 42.573 42.243 42.834 -5.2339 96 35 4 0 0 0 0.0091809 2 29692 29561;29692 82.529 24.807 1 127070000 52943 2815 35724 36526 61485;61486 61486 0.07193414506036788 RLIQGDQILSV 11 Unmodified _RLIQGDQILSV_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ nc|ENSG00000132849|Q8NI35|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3640747070312 2 621.364244 1240.71394 0.25982 0.00016144 0.67378 0.00041866 0.9336 0.00058011 621.3648149393899 58.311 0.16006 57.82 57.723 57.883 -0.49079 11 7 2 0 0 0 0.59643 1 31686 31686 11.518 5.326 1 783390 52944 4457 35725 36527 61487 61487 0.10320733005960392 RLIRPRRPTA 10 Unmodified _RLIRPRRPTA_ 0 0 0 REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF REV__ENST00000321892.8_1_17:65822219-65850151:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 618.39599609375 2 618.394005 1234.77346 NaN NaN NaN NaN NaN NaN NaN 104.18 1 98.002 97.502 98.502 -6.1757 0 0 0 0.99248 1 69785 69785 1.4819 0 1 + 52945 25519 35726 36528 61488 61488 0.16546093530655526 RLISASLFL 9 Unmodified _RLISASLFL_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1 nc|ENSG00000075391|Q9UJF2|RASAL2;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000197283|Q96PV0-3|SYNGAP1 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.316162109375 2 510.316035 1018.61752 0.52463 0.00026773 -1.4656 -0.00074793 -0.94099 -0.0004802 510.31500773864843 77.981 0.41234 78.033 77.89 78.302 0.052444 32 16 3 0 0 0 0.15471 1 43056 43056 27.629 4.8925 1 3200100 52946 4867;1153;9937 35727 36529 61489 61489 0.10895210236662933 RLITQFHF 8 Unmodified _RLITQFHF_ 0 0 0 nc|ENSG00000132670|P18433-6|PTPRA;ENSG00000132670|ENST00000399903|PTPRA nc|ENSG00000132670|P18433-6|PTPRA nc|ENSG00000132670|P18433-6|PTPRA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2978515625 2 531.298176 1060.5818 NaN NaN NaN NaN NaN NaN NaN 90.948 1 90.948 90.448 91.448 0 0 0 0 0.97444 1 50304 50304 2.3027 0 1 52947 4433 35728 36530 61490 61490 0.05393172779645283 RLKAFHANSI 10 Unmodified _RLKAFHANSI_ 0 0 0 REV__ENSG00000172932|ENST00000511455|ANKRD13D REV__ENSG00000172932|ENST00000511455|ANKRD13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8346557617188 2 578.832914 1155.65128 0.81297 0.00047057 0.32615 0.00018879 1.1391 0.00065936 578.833247685198 45.771 0.25344 40.816 40.669 40.922 -4.9549 27 16 2 0 0 0 0.2667 1 28125 28125 27.629 0 1 8255000 + 52948 22688 35729 36531 61491 61491 0.07967631728411106 RLKCSLREL 9 Unmodified _RLKCSLREL_ 0 0 0 ENST00000493232.5_1_7:2580815-2581753:-|nuORF ENST00000493232.5_1_7:2580815-2581753:-|nuORF ENST00000493232.5_1_7:2580815-2581753:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2219543457031 3 373.221859 1116.64375 1.7176 0.00064103 -1.0418 -0.00038884 0.67571 0.00025219 373.2213998528417 20.867 0.42081 18.174 17.95 18.371 -2.693 93 25 5 0 0 0 0.31356 2 11044 11044;11150 16.566 2.1605 1 125720000 52949 14311 35730 36532 61492;61493 61492 0.09009156136471574 RLKELPPLI 9 Unmodified _RLKELPPLI_ 0 0 0 REV__ENSG00000167701|ENST00000394955|GPT REV__ENSG00000167701|ENST00000394955|GPT MSMS AL20221201_MKP_PDAC_01 4 360.2379760742188 3 360.237615 1077.69102 NaN NaN NaN NaN NaN NaN NaN 26.575 1 23.623 23.123 24.123 -2.9511 0 0 0 0.82579 1 14659 14659 4.5289 1.7937 1 + 52950 22244 35731 36533 61494 61494 0.15527758679127146 RLKGPHAK 8 Unmodified _RLKGPHAK_ 0 0 0 ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF ENST00000563230.1_1_16:79123974-79135149:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 453.784912109375 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 7.4648 1 4.9829 4.4829 5.4829 -2.482 0 0 0 0.97444 1 3767 3767 0 0 1 52951 15357 35732 36534 61495 61495 0.0993632332802008 RLKHRFRKLQ 10 Unmodified _RLKHRFRKLQ_ 0 0 0 REV__ENSG00000174885|ENST00000534750|NLRP6 REV__ENSG00000174885|ENST00000534750|NLRP6 MSMS AL20221201_MKP_PDAC_01 4 691.438720703125 2 691.436204 1380.85786 NaN NaN NaN NaN NaN NaN NaN 104.73 1 98.553 98.053 99.053 -6.1757 0 0 0 1.0024 1 70115 70115 0.40072 0 1 + 52952 22824 35733 36535 61496 61496 0.1826604434741057 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2487487792969 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 94.663 1 94.243 93.743 94.743 -0.42044 0 0 0 0.97444 1 51715 51715 0 0 1 52953 9559 35734 36536 61497 61497 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2489318847656 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 95.548 1 95.18 94.68 95.68 -0.36814 0 0 0 0.97444 1 52187 52187 0 0 1 52954 9559 35734 36536 61498 61498 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2487487792969 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 95.877 1 95.509 95.009 96.009 -0.36814 0 0 0 0.97444 1 52365 52365 0 0 1 52955 9559 35734 36536 61499 61499 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2485961914062 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 96.067 1 95.762 95.262 96.262 -0.30472 0 0 0 0.97444 1 52467 52467 0 0 1 52956 9559 35734 36536 61500 61500 0.20059475015523276 RLKKKKIF 8 Unmodified _RLKKKKIF_ 0 0 0 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 ENSG00000187527|ENST00000342358|ATP13A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2486267089844 3 354.249966 1059.72807 NaN NaN NaN NaN NaN NaN NaN 97.015 1 96.711 96.211 97.211 -0.30472 0 0 0 0.97444 1 52980 52980 0 0 1 52957 9559 35734 36536 61501 61501 0.20059475015523276 RLKLKIKL 8 Unmodified _RLKLKIKL_ 0 0 0 REV__ENST00000408939.3_1_2:178417606-178417663:-|nuORF REV__ENST00000408939.3_1_2:178417606-178417663:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1011.900024414062 1 1011.7401 1010.73282 0.31499 0.00031869 -3.1682 -0.0032053 -2.8532 -0.0028867 1011.7408379077523 26.874 0.042601 26.842 26.823 26.866 -0.031708 4 2 2 0 0 0 8.7369 1 13840 13840 0 0 1 26957000 + 52958 26675 35735 36537 61502 61502 0.22788359158300864 RLKLVLDVV 9 Unmodified _RLKLVLDVV_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2373657226562 3 352.237615 1053.69102 NaN NaN NaN NaN NaN NaN NaN 75.847 1 75.895 75.395 76.395 0.047943 0 0 0 0.85359 1 41837 41837 1.0715 0 1 + 52959 24231 35736 36538 61503 61503 0.1663175867913651 RLKPLKVRRI 10 Unmodified _RLKPLKVRRI_ 0 0 0 ENSG00000171729|ENST00000376008|TMEM51 ENSG00000171729|ENST00000376008|TMEM51 ENSG00000171729|ENST00000376008|TMEM51 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.9464111328125 2 639.945873 1277.87719 NaN NaN NaN NaN NaN NaN NaN 92.417 1 92.417 91.917 92.917 0 0 0 0 1.0061 1 51104 51104 0 0 1 52960 8132 35737 36539 61504 61504 0.24937000638306017 RLKQLLIRII 10 Unmodified _RLKQLLIRII_ 0 0 0 REV__nc|ENSG00000114812|P32241-3|VIPR1 REV__nc|ENSG00000114812|P32241-3|VIPR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1266.267944335938 1 1265.87799 1264.87071 0.23278 0.00029467 1.0191 0.0012901 1.2519 0.0015848 1265.8826316755324 53.234 0.08028 52.782 52.742 52.823 -0.45173 5 3 2 0 0 0 0.24012 1 28799 28799 0 0 1 1191200 + 52961 18934 35738 36540 61505 61505 0.2488706268693477 RLKRLFLA 8 Unmodified _RLKRLFLA_ 0 0 0 ENST00000263979.7_1_1:25944342-25980780:+|nuORF;ENSG00000117643|ENST00000374332|MAN1C1 ENST00000263979.7_1_1:25944342-25980780:+|nuORF ENST00000263979.7_1_1:25944342-25980780:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.8389587402344 2 508.840011 1015.66547 -0.38608 -0.00019646 -0.62759 -0.00031934 -1.0137 -0.0005158 508.8391909506553 105.1 0.028656 105.05 105.03 105.06 -0.048737 5 3 2 0 0 0 8.7369 1 58335 58335 0 0 1 1696100 52962 3329 35739 36541 61506 61506 0.15826328947343882 RLKRLVLKKL 10 Unmodified _RLKRLVLKKL_ 0 0 0 REV__nc|ENSG00000185745|P09914-2|IFIT1 REV__nc|ENSG00000185745|P09914-2|IFIT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.9569702148438 2 633.958449 1265.90235 NaN NaN NaN NaN NaN NaN NaN 14.526 1 14.533 14.033 15.033 0.0073986 0 0 0 1.0061 1 7204 7204 0 0 1 + 52963 23522 35740 36542 61507 61507 0.2800305544085404 RLKTAAAAAA 10 Unmodified _RLKTAAAAAA_ 0 0 0 ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR ENSG00000180914|ENST00000316793|OXTR MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2881774902344 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.72607 1 63224 63224 0 0 1 250360000 52964 8932 35741 36543 61508 61508 0.08748582399960014 RLKYRALK 8 Unmodified _RLKYRALK_ 0 0 0 REV__nc|ENSG00000176302|Q6PIV2-2|FOXR1 REV__nc|ENSG00000176302|Q6PIV2-2|FOXR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3438110351562 2 524.342918 1046.67128 NaN NaN NaN NaN NaN NaN NaN 104.42 1 104.37 103.87 104.87 -0.048737 0 0 0 0.97444 1 57977 57977 0 0 1 + 52965 22924 35742 36544 61509 61509 0.14981427458997132 RLLAKECRL 9 Carbamidomethyl (C) _RLLAKEC(Carbamidomethyl (C))RL_ RLLAKEC(1)RL RLLAKEC(67)RL 0 1 0 ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8974914550781 3 386.897375 1157.6703 0.56493 0.00021857 -0.24618 -9.5248E-05 0.31874 0.00012332 386.89714993054514 24.77 0.27069 21.887 21.723 21.993 -2.8831 26 15 2 0 0 0 0.016848 1 13515 13515 66.683 20.661 1 7288300 52966 10257 35743 36545 61510 61510 925 0.09776845027818126 RLLAYISQV 9 Unmodified _RLLAYISQV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8215942382812 2 531.818941 1061.62333 0.45025 0.00023945 2.6533 0.0014111 3.1035 0.0016505 531.8202691169764 59.023 0.20517 58.962 58.86 59.065 -0.060719 16 9 2 0 0 0 0.06294 1 32151 32151 41.84 11.203 1 2018400 52967 1899 35744 36546 61511 61511 0.09498308748311501 RLLCGQGK 8 Unmodified _RLLCGQGK_ 0 0 0 REV__ENST00000506770.5_1_4:3949295-3954861:-|nuORF REV__ENST00000506770.5_1_4:3949295-3954861:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.49658203125 1 874.492733 873.485456 1.585 0.0013861 2.5267 0.0022096 4.1117 0.0035957 874.4950256641024 103.56 0.035187 97.383 97.366 97.401 -6.1757 6 4 2 0 0 0 0.80992 1 69433 69433 0.69038 0 1 5813300 + 52968 25444 35745 36547 61512 61512 0.043652819480712424 RLLDEQFAVL 10 Unmodified _RLLDEQFAVL_ 0 0 0 ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R ENSG00000130787|ENST00000253083|HIP1R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2821044921875 2 602.340238 1202.66592 0.61318 0.00036935 -1.0523 -0.00063382 -0.43907 -0.00026447 602.3393775241868 72.416 0.20736 71.94 71.834 72.041 -0.47609 15 9 2 0 0 0 0.23103 1 39660 39660 13.615 7.4091 1 1068100 52969 4262 35746 36548 61513 61513 0.07269659085886815 RLLDGAFKL 9 Unmodified _RLLDGAFKL_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000491646.1_1_2:122217554-122217677:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8148803710938 2 516.813659 1031.61277 0.84607 0.00043726 -0.32883 -0.00016994 0.51724 0.00026732 516.813337274982 58.145 0.29993 58.084 57.915 58.215 -0.060722 46 14 4 0 0 0 0.040683 1 31634 31634 49.554 5.696 1 20857000 52970 1119 35747 36549 61514 61514 0.09822326093899392 RLLDLENIQI 10 Unmodified _RLLDLENIQI_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2;ENST00000487843.1_1_7:36895158-37025590:-|nuORF;nc|ENSG00000155849|Q92556-2|ELMO1;nc|ENSG00000155849|Q92556-3|ELMO1;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000155849|ENST00000310758|ELMO1 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3598022460938 2 613.858795 1225.70304 0.89179 0.00054743 -2.3895 -0.0014668 -1.4977 -0.0009194 613.856858425826 79.381 0.25806 78.892 78.75 79.008 -0.48932 29 10 3 0 0 0 0.38225 1 43443 43443 22.658 3.4011 1 3194300 52971 851;6409 35748 36550 61515 61515 0.09921330631664205 RLLDRKVLL 9 Unmodified _RLLDRKVLL_ 0 0 0 ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000143457|ENST00000271732|GOLPH3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.9207153320312 3 375.920397 1124.73936 0.32066 0.00012054 0.30576 0.00011494 0.62642 0.00023548 375.92052935626003 39.876 0.35889 39.881 39.668 40.026 0.0050545 63 16 5 0 0 0 0.16019 2 21175 21175;21276 27.088 4.285 1 73650000 52972 5514 35749 36551 61516;61517 61516 0.18198252319029962 RLLDRKVLL 9 Unmodified _RLLDRKVLL_ 0 0 0 ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000143457|ENST00000271732|GOLPH3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3779296875 2 563.376958 1124.73936 0.75103 0.00042311 0.3528 0.00019876 1.1038 0.00062187 563.3771831195874 39.84 0.22979 39.845 39.729 39.959 0.0050583 15 10 2 0 0 0 0.44883 1 21232 21232 6.2058 0 1 1202000 52973 5514 35749 36551 61518 61518 0.18198252319029962 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.8302612304688 2 543.829506 1085.64446 0.34693 0.00018867 0.75883 0.00041267 1.1058 0.00060134 543.8302420035485 50.128 0.20424 50.128 50.032 50.236 0 23 9 3 0 0 0 0.21643 1 27672 27672 21.537 1.0834 1 4243900 52974 7406 35750 36552 61519 61519 0.10506274057183873 RLLDSEIKI 9 Unmodified _RLLDSEIKI_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.829506 1085.64446 0.64605 0.00035134 3.121 0.0016973 3.767 0.0020486 543.8313981606908 50.504 0.22249 50.09 49.992 50.214 -0.41351 -0.01902 0.0021384 NaN 21.537 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 6226600 52975 7406 35750 36552 0.10506274057183873 RLLDYVATV 9 Unmodified _RLLDYVATV_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.3026733398438 2 525.303124 1048.5917 0.58361 0.00030657 -1.6495 -0.00086651 -1.0659 -0.00055993 525.3019667438938 59.297 0.23463 59.297 59.095 59.329 0 14 9 2 0 0 0 0.18144 1 33007 33007 24.991 4.5373 1 905710 52976 3160 35751 36553 61520 61520 0.06934315994340068 RLLDYVATV 9 Unmodified _RLLDYVATV_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.3034057617188 2 525.303124 1048.5917 0.1857 9.755E-05 -0.27313 -0.00014348 -0.087427 -4.5926E-05 525.3029484303662 59.786 0.29729 59.295 59.132 59.429 -0.49079 36 14 3 0 0 0 0.11784 1 32494 32494 31.268 8.5321 1 12965000 52977 3160 35751 36553 61521 61521 0.06934315994340068 RLLDYVVNI 9 Unmodified _RLLDYVVNI_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8238525390625 2 552.824224 1103.63389 0.2719 0.00015031 -0.61613 -0.00034061 -0.34422 -0.00019029 552.8240852492522 73.245 0.38297 73.287 73.108 73.491 0.041733 55 17 4 0 0 0 0.040683 1 40353 40353 49.554 18.286 1 28246000 52978 9933 35752 36554 61522 61522 0.08622291402753035 RLLDYVVNI 9 Unmodified _RLLDYVVNI_ 0 0 0 nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 nc|ENSG00000197256|Q63ZY3-3|KANK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8300170898438 2 552.824224 1103.63389 1.2894 0.00071281 1.2664 0.00070009 2.5558 0.0014129 552.8251390635861 97.158 0.29056 90.983 90.827 91.117 -6.1757 51 16 4 0 0 0 0.05483 1 64331 64331 43.772 15.286 1 147090000 52979 9933 35752 36554 61523 61523 0.08622291402753035 RLLEAIIRL 9 Unmodified _RLLEAIIRL_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-4|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.7948608398438 2 548.863683 1095.71281 0.28611 0.00015704 0.13001 7.1358E-05 0.41612 0.0002284 548.8637261817892 99.052 0.11538 92.876 92.807 92.923 -6.1757 9 6 2 0 0 0 0.16979 1 65826 65826 26.021 0 1 19489000 52980 10932 35753 36555 61524 61524 0.16878563427690096 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.3016357421875 2 533.300581 1064.58661 0.15895 8.477E-05 0.58063 0.00030965 0.73958 0.00039442 533.3015318786436 55.041 0.18353 55.041 54.986 55.17 0 13 7 2 0 0 0 0.1685 1 30594 30594 26.268 3.1197 1 1229300 52981 276 35754 36556 61525 61525 0.05690012131753974 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3006591796875 2 533.300581 1064.58661 0.36769 0.00019609 0.25174 0.00013425 0.61943 0.00033034 533.3006735741773 55.582 0.31427 55.104 54.945 55.259 -0.47798 45 14 4 0 0 0 0.047788 2 30119 30119;30225 45.7 18.071 1 13462000 52982 276 35754 36556 61526;61527 61526 0.05690012131753974 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3013305664062 2 533.300581 1064.58661 0.12916 6.8881E-05 2.1915 0.0011687 2.3206 0.0012376 533.3014464549714 55.285 0.20147 55.216 55.057 55.258 -0.068741 17 9 3 0 0 0 0.20428 1 30051 30051 22.736 3.4793 1 1147600 52983 276 35754 36556 61528 61528 0.05690012131753974 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MSMS AL20221201_MKP_PDAC_01 4 533.3015747070312 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 62.099 1 55.923 55.423 56.423 -6.1757 0 0 0 0.27852 1 40045 40045 26.268 2.2476 1 52984 276 35754 36556 61529 61529 0.05690012131753974 RLLEATSYL 9 Unmodified _RLLEATSYL_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MSMS AL20221201_MKP_PDAC_01 4 533.283447265625 2 533.300581 1064.58661 NaN NaN NaN NaN NaN NaN NaN 62.113 1 55.937 55.437 56.437 -6.1757 0 0 0 0.068038 1 40056 40056 51.63 15.503 1 52985 276 35754 36556 61530 61530 0.05690012131753974 RLLEDCRL 8 Unmodified _RLLEDCRL_ 0 0 0 ENSG00000039600|ENST00000265007|SOX30;nc|ENSG00000039600|O94993-2|SOX30 ENSG00000039600|ENST00000265007|SOX30 ENSG00000039600|ENST00000265007|SOX30 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8065795898438 2 509.279126 1016.5437 1.0825 0.0005513 -1.5882 -0.00080884 -0.50571 -0.00025755 509.2779671623393 63.747 0.17349 63.737 63.629 63.803 -0.010532 13 7 2 0 0 0 8.7369 1 34908 34908 16.942 0 1 1760600 52986 645 35755 36557 61531 61531 0.03608918802683547 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.8262329101562 2 660.825149 1319.63574 0.27976 0.00018487 -0.97361 -0.00064338 -0.69385 -0.00045851 660.8244652479872 59.867 0.71908 59.867 59.649 60.368 0 106 32 5 0 0 0 0.02135 3 33298 33298;33404;33521 57.108 40.958 1 349800000 52987 2759;13466 35756 36558 61532;61533;61534 61532 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.3281860351562 2 660.825149 1319.63574 0.22543 0.00014897 -0.27704 -0.00018307 -0.051609 -3.4105E-05 660.8251622758539 60.862 0.42765 60.862 60.695 61.123 0 44 17 3 0 0 0 0.010729 2 33915 33915;34013 67.081 39.452 1 6157100 52988 2759;13466 35756 36558 61535;61536 61535 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.8252563476562 2 660.825149 1319.63574 -0.03707 -2.4497E-05 -0.29279 -0.00019348 -0.32986 -0.00021798 660.8250263888356 61.596 0.43172 61.596 61.343 61.775 0 42 19 4 0 0 0 0.096911 2 34388 34285;34388 42.835 17.842 1 5968800 52989 2759;13466 35756 36558 61537;61538 61538 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.82373046875 2 660.825149 1319.63574 -0.13179 -8.709E-05 -0.62303 -0.00041171 -0.75482 -0.0004988 661.3262431865454 61.91 0.2429 61.91 61.775 62.018 0 21 10 3 0 0 0 0.15252 1 34504 34504 36.395 20.246 1 2123300 52990 2759;13466 35756 36558 61539 61539 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8258056640625 2 660.825149 1319.63574 0.0067641 4.4699E-06 0.45035 0.00029761 0.45712 0.00030208 660.8253567931089 60.442 0.24153 59.951 59.826 60.068 -0.49079 33 11 4 0 0 0 0.02135 1 32882 32882 57.108 33.087 1 20368000 52991 2759;13466 35756 36558 61540 61540 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8240356445312 2 660.825149 1319.63574 0.67207 0.00044412 0.5435 0.00035916 1.2156 0.00080328 660.8249622493897 62.149 0.19641 61.662 61.529 61.726 -0.48764 14 8 2 0 0 0 0.31498 1 33860 33860 25.997 13.757 1 1368400 52992 2759;13466 35756 36558 61541 61541 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8247680664062 2 660.825149 1319.63574 NaN NaN NaN NaN NaN NaN NaN 60.576 1 60.086 59.586 60.586 -0.48932 0 0 0 0.75507 1 32989 32989 14.218 6.6092 1 52993 2759;13466 35756 36558 61542 61542 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.8251342773438 2 660.825149 1319.63574 0.63147 0.00041729 -1.0442 -0.00069003 -0.41273 -0.00027274 661.3256827081306 60.035 0.21196 59.982 59.856 60.068 -0.053062 20 10 3 0 0 0 0.0062377 1 32723 32723 73.196 45.567 1 7207500 52994 2759;13466 35756 36558 61543 61543 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8245239257812 2 660.825149 1319.63574 0.42086 0.00027811 0.70109 0.0004633 1.122 0.00074141 660.8257251909928 67.328 0.69449 61.152 60.962 61.657 -6.1757 56 38 2 0 0 0 8.6319E-10 3 43838 43838;43971;44144 117.84 70.089 1 19023000 52995 2759;13466 35756 36558 61544;61545;61546 61544 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.825927734375 2 660.825149 1319.63574 0.43522 0.0002876 -0.037288 -2.4641E-05 0.39793 0.00026296 660.825174405217 69.843 0.76029 63.668 63.343 64.103 -6.1757 54 42 2 0 0 0 2.5626E-06 2 45640 45514;45640 100.71 66.307 1 27615000 52996 2759;13466 35756 36558 61547;61548 61548 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.825927734375 2 660.825149 1319.63574 0.61996 0.00040968 -0.87726 -0.00057971 -0.2573 -0.00017003 660.8249326431204 74.781 2.8662 68.605 67.226 70.093 -6.1757 432 151 5 0 0 0 8.6319E-10 14 48597 48097;48218;48361;48481;48597;48718;48846;48970;49097;49230;49350;49471;49598;49757 117.84 77.888 1 73282000 52997 2759;13466 35756 36558 61549;61550;61551;61552;61553;61554;61555;61556;61557;61558;61559;61560;61561;61562 61553 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MSMS AL20221201_MKP_PDAC_01 4 660.8257446289062 2 660.825149 1319.63574 NaN NaN NaN NaN NaN NaN NaN 73.363 1 67.188 66.688 67.688 -6.1757 0 0 0 0.06135 1 47979 47979 59.052 35.263 1 52998 2759;13466 35756 36558 61563 61563 -0.011287443699529831 RLLEDGEDFNL 11 Unmodified _RLLEDGEDFNL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000446618.1_1_22:19245879-19246326:+|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 660.825149 1319.63574 -0.090763 -5.9979E-05 0.027064 1.7885E-05 -0.063699 -4.2094E-05 660.8249212361126 61.421 0.17271 60.932 60.858 61.031 -0.48932 -0.050424 0.00012962 NaN 117.84 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1231200 52999 2759;13466 35756 36558 -0.011287443699529831 RLLEEHAKL 9 Unmodified _RLLEEHAKL_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2222290039062 3 370.220624 1107.64004 1.1126 0.00041191 1.7529 0.00064895 2.8655 0.0010609 370.22137012295957 28.2 0.26314 25.052 24.878 25.142 -3.1482 21 13 2 0 0 0 0.085786 1 15666 15666 36.395 13.62 1 3578900 53000 9418 35757 36559 61564 61564 0.09052809634272307 RLLEEILIPSY 11 Unmodified _RLLEEILIPSY_ 0 0 0 REV__ENST00000367302.5_2_1:201790213-201790303:+|nuORF REV__ENST00000367302.5_2_1:201790213-201790303:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.5976257324219 3 449.262377 1344.7653 0.95277 0.00042805 0.82708 0.00037158 1.7799 0.00079962 449.596805705063 39.033 0.25916 34.582 34.445 34.704 -4.4509 23 16 2 0 0 0 0.5942 1 23109 23109 11.631 8.0387 1 8915900 + 53001 25980 35758 36560 61565 61565 0.10671056980004323 RLLELETRL 9 Unmodified _RLLELETRL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8487548828125 2 571.84823 1141.68191 0.52018 0.00029746 -0.12658 -7.2386E-05 0.3936 0.00022508 571.8482511128489 51.991 0.17514 51.557 51.456 51.631 -0.43367 19 8 3 0 0 0 0.087461 1 28064 28064 37.771 1.2651 1 3141400 53002 3672 35759 36561 61566 61566 0.11673365322803875 RLLELETRL 9 Unmodified _RLLELETRL_ 0 0 0 nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF nc|ENSG00000122966|O14578|CIT nc|ENSG00000122966|O14578|CIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5684204101562 3 381.567912 1141.68191 0.37086 0.00014151 -0.1018 -3.8842E-05 0.26906 0.00010266 381.56795727538827 52.013 0.23163 51.58 51.437 51.669 -0.43367 19 11 2 0 0 0 0.094905 1 28067 28067 34.222 1.3239 1 2783400 53003 3672 35759 36561 61567 61567 0.11673365322803875 RLLELLTKL 9 Unmodified _RLLELLTKL_ 0 0 0 ENST00000416282.2_1_3:38180152-38182096:+|nuORF;nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;nc|ENSG00000172936|Q99836-4|MYD88;ENST00000460295.1_1_3:38180152-38181542:+|nuORF;nc|ENSG00000172936|Q99836-3|MYD88 ENST00000416282.2_1_3:38180152-38182096:+|nuORF ENST00000416282.2_1_3:38180152-38182096:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8654174804688 2 549.865892 1097.71723 0.11435 6.2878E-05 0.1731 9.518E-05 0.28745 0.00015806 549.8659846268777 72.344 0.29213 72.386 72.256 72.548 0.041725 34 13 3 0 0 0 0.040683 1 39818 39818 49.554 7.5987 1 7636600 53004 8271 35760 36562 61568 61568 0.17228027850592298 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5641784667969 3 376.564279 1126.67101 0.054596 2.0559E-05 0.41593 0.00015663 0.47053 0.00017718 376.56443852171867 39.766 0.27662 39.766 39.616 39.892 0 40 13 4 0 0 0 0.080011 1 21314 21314 37.771 9.5377 1 15070000 53005 1894 35761 36563 61569 61569 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3431396484375 2 564.342781 1126.67101 0.2923 0.00016496 0.13124 7.4062E-05 0.42354 0.00023902 564.3428991590039 39.766 0.25352 39.766 39.639 39.892 0 39 12 4 0 0 0 0.024507 1 21316 21316 72.968 27.268 1 12452000 53006 1894 35761 36563 61570 61570 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3427124023438 2 564.342781 1126.67101 0.41655 0.00023508 -0.046285 -2.6121E-05 0.37027 0.00020896 564.3428435609488 40.065 0.23343 39.767 39.649 39.882 -0.29716 20 10 3 0 0 0 0.01861 1 21150 21150 70.332 14.829 1 4603200 53007 1894 35761 36563 61571 61571 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5646362304688 3 376.564279 1126.67101 NaN NaN NaN NaN NaN NaN NaN 40.031 1 39.734 39.234 40.234 -0.29716 0 0 0 0.081826 1 21143 21143 48.073 10.301 1 53008 1894 35761 36563 61572 61572 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5646057128906 3 376.564279 1126.67101 0.88647 0.00033381 0.14493 5.4576E-05 1.0314 0.00038839 376.5643759717187 45.194 0.41856 40.342 40.148 40.567 -4.852 64 28 3 0 0 0 0.047194 2 27656 27656;27796 46.022 10.41 1 33661000 53009 1894 35761 36563 61573;61574 61573 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3429565429688 2 564.342781 1126.67101 0.55164 0.00031131 0.052661 2.9719E-05 0.6043 0.00034103 564.3428750167774 45.187 0.37776 40.335 40.162 40.54 -4.852 64 25 3 0 0 0 0.010362 1 27673 27673 86.332 13.364 1 41951000 53010 1894 35761 36563 61575 61575 0.11273962948507688 RLLEQKVEL 9 Unmodified _RLLEQKVEL_ 0 0 0 ENST00000557680.1_1_14:39648378-39651535:+|nuORF;ENSG00000100941|ENST00000216832|PNN ENST00000557680.1_1_14:39648378-39651535:+|nuORF ENST00000557680.1_1_14:39648378-39651535:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 376.564279 1126.67101 0.30038 0.00011311 -0.94898 -0.00035735 -0.6486 -0.00024424 376.5637774687837 39.724 0.2061 39.729 39.585 39.791 0.0050545 -0.018474 -0.0014706 NaN 37.771 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 611520 53011 1894 35761 36563 0.11273962948507688 RLLEQLQEI 9 Unmodified _RLLEQLQEI_ 0 0 0 nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1;ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 nc|ENSG00000068400|Q4V328-4|GRIPAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.3327026367188 2 571.332413 1140.65027 0.44849 0.00025624 1.5187 0.00086769 1.9672 0.0011239 571.3336317016482 58.933 0.28839 58.442 58.29 58.579 -0.49079 33 13 3 0 0 0 0.017075 1 32029 32029 66.457 1.2217 1 6949800 53012 980 35762 36564 61576 61576 0.08557372568861865 RLLESVVVL 9 Unmodified _RLLESVVVL_ 0 0 0 ENSG00000157600|ENST00000372068|TMEM164 ENSG00000157600|ENST00000372068|TMEM164 ENSG00000157600|ENST00000372068|TMEM164 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.3291015625 2 514.329142 1026.64373 -0.083947 -4.3176E-05 -0.34349 -0.00017667 -0.42744 -0.00021984 514.3287503373031 69.966 0.32722 69.487 69.314 69.641 -0.47903 37 17 3 0 0 0 0.2324 1 38254 38254 20.415 3.3016 1 7540300 53013 6529 35763 36565 61577 61577 0.13147479408144136 RLLETVIDV 9 Unmodified _RLLETVIDV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.3164672851562 2 529.316232 1056.61791 0.35419 0.00018748 -0.19554 -0.0001035 0.15865 8.3976E-05 529.3160240201505 64.252 0.33562 64.252 64.071 64.407 0 29 14 3 0 0 0 0.11784 1 35822 35822 31.268 2.1868 1 1969200 53014 8835 35764 36566 61578 61578 0.0918658516582127 RLLETVIDV 9 Unmodified _RLLETVIDV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3171997070312 2 529.316232 1056.61791 0.44635 0.00023626 0.15572 8.2426E-05 0.60207 0.00031869 529.3163113287063 64.685 0.29959 64.2 64.037 64.337 -0.48512 30 13 3 0 0 0 0.085319 1 35271 35271 36.506 7.4246 1 3356700 53015 8835 35764 36566 61579 61579 0.0918658516582127 RLLETVIDV 9 Unmodified _RLLETVIDV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS AL20221201_MKP_PDAC_01 4 529.317138671875 2 529.316232 1056.61791 NaN NaN NaN NaN NaN NaN NaN 90.819 1 84.644 84.144 85.144 -6.1757 0 0 0 0.15231 1 60007 60007 36.506 7.4246 1 53016 8835 35764 36566 61580 61580 0.0918658516582127 RLLETVIDV 9 Unmodified _RLLETVIDV_ 0 0 0 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 ENSG00000179409|ENST00000319004|GEMIN4 MSMS AL20221201_MKP_PDAC_01 4 529.3177490234375 2 529.316232 1056.61791 NaN NaN NaN NaN NaN NaN NaN 91.005 1 84.829 84.329 85.329 -6.1757 0 0 0 0.10661 1 60143 60143 41.956 7.5538 1 53017 8835 35764 36566 61581 61581 0.0918658516582127 RLLEVPVML 9 Oxidation (M) _RLLEVPVM(Oxidation (M))L_ RLLEVPVM(1)L RLLEVPVM(46)L 0 0 1 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3233032226562 2 543.323002 1084.63145 0.14408 7.8282E-05 -0.57376 -0.00031174 -0.42968 -0.00023345 543.3231159181768 72.304 0.35336 72.345 72.174 72.527 0.041733 57 16 5 0 0 0 0.047788 1 39764 39764 45.7 30.861 1 17118000 53018 859 35765 36567 61582 61582 130 0.09252119673442394 RLLEVPVML 9 Unmodified _RLLEVPVML_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.326416015625 2 535.325545 1068.63654 1.1458 0.0006134 0.83714 0.00044814 1.983 0.0010615 535.3259296915628 81.224 0.22961 81.284 81.114 81.343 0.059929 14 8 2 0 0 0 0.2324 1 44919 44919 20.415 9.5906 1 1933800 53019 859 35765 36568 61583 61583 0.10496423536051225 RLLEVPVML 9 Unmodified _RLLEVPVML_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.32666015625 2 535.325545 1068.63654 0.48839 0.00026145 -0.78922 -0.00042249 -0.30083 -0.00016104 535.3258103036209 99.096 0.25735 92.92 92.824 93.081 -6.1757 28 14 3 0 0 0 0.020973 1 65872 65872 62.573 28.47 1 183290000 53020 859 35765 36568 61584 61584 0.10496423536051225 RLLEVTNTI 9 Unmodified _RLLEVTNTI_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.814697265625 2 529.813856 1057.61316 -0.21421 -0.00011349 -0.1339 -7.0944E-05 -0.34811 -0.00018443 529.8136488428291 51.38 0.17188 50.967 50.817 50.988 -0.41351 19 8 3 0 0 0 0.044042 1 27648 27648 43.772 7.6454 1 7991500 53021 8296;16388 35766 36569 61585 61585 0.08665701023096517 RLLEVTNTIRV 11 Unmodified _RLLEVTNTIRV_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.6027221679688 3 438.601504 1312.78268 0.24768 0.00010863 0.2361 0.00010355 0.48378 0.00021219 438.60180323790473 51.658 0.19617 51.599 51.494 51.69 -0.058918 18 9 3 0 0 0 0.058008 1 27983 27983 49.159 33.621 1 1683300 53022 8296;16388 35767 36570 61586 61586 0.13880397305661063 RLLEVVTSI 9 Unmodified _RLLEVVTSI_ 0 0 0 nc|ENSG00000159322|Q9BRR6-3|ADPGK;nc|ENSG00000159322|Q9BRR6-5|ADPGK;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK nc|ENSG00000159322|Q9BRR6-3|ADPGK nc|ENSG00000159322|Q9BRR6-3|ADPGK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3195190429688 2 515.318774 1028.623 0.34024 0.00017533 0.57899 0.00029837 0.91924 0.0004737 515.3190070945348 63.737 0.25555 63.251 63.104 63.359 -0.48617 17 11 2 0 0 0 0.05483 1 34751 34751 43.772 7.6454 1 2927000 53023 6646 35768 36571 61587 61587 0.1098288902846889 RLLFERWSL 9 Unmodified _RLLFERWSL_ 0 0 0 ENST00000549942.1_1_12:50541125-50561113:-|nuORF ENST00000549942.1_1_12:50541125-50561113:-|nuORF ENST00000549942.1_1_12:50541125-50561113:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2364196777344 3 407.236385 1218.68733 0.99355 0.00040461 0.33666 0.0001371 1.3302 0.00054171 407.23641205931403 93.725 0.31988 87.549 87.412 87.732 -6.1757 48 18 3 0 0 0 0.39143 2 62010 62010;62156 12.873 7.0892 1 41309000 53024 15157 35769 36572 61588;61589 61588 0.0867308890528875 RLLFHPYM 8 Unmodified _RLLFHPYM_ 0 0 0 REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF REV__ENST00000261739.8_1_12:110477068-110477323:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7877807617188 2 538.78913 1075.56371 0.42587 0.00022945 -0.81225 -0.00043763 -0.38638 -0.00020818 538.788462157668 26.693 0.2995 23.742 23.56 23.86 -2.9511 21 15 2 0 0 0 0.70294 1 14726 14726 10.183 0 1 5780800 + 53025 25003 35770 36573 61590 61590 0.02894714533294973 RLLGKLPEL 9 Unmodified _RLLGKLPEL_ 0 0 0 nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000123358|ENST00000394825|NR4A1 nc|ENSG00000123358|P22736-2|NR4A1 nc|ENSG00000123358|P22736-2|NR4A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2821655273438 2 519.837134 1037.65972 -0.22203 -0.00011542 0.48959 0.00025451 0.26756 0.00013909 519.8379014556413 53.836 0.1954 53.769 53.725 53.921 -0.066936 13 9 2 0 0 0 0.20358 1 29210 29210 10.074 3.3508 1 1594600 53026 3702 35771 36574 61591 61591 0.14239185645033103 RLLGYVATL 9 Unmodified _RLLGYVATL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3067626953125 2 503.30821 1004.60187 0.3324 0.0001673 -2.4837 -0.0012501 -2.1513 -0.0010828 503.30642657085076 62.278 0.54893 62.245 61.946 62.495 -0.032787 56 28 3 0 0 0 0.05447 1 34030 34030 43.858 13.222 1 40132000 53027 401 35772 36575 61592 61592 0.09974923719619255 RLLGYVATL 9 Unmodified _RLLGYVATL_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;ENST00000483030.1_1_1:115263111-115268953:-|nuORF nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.3083190917969 2 503.30821 1004.60187 1.1982 0.00060304 0.1204 6.06E-05 1.3186 0.00066364 503.30787126812527 92.013 0.47005 85.838 85.55 86.02 -6.1757 64 27 3 0 0 0 0.12424 1 60917 60917 30.637 6.616 1 36921000 53028 401 35772 36575 61593 61593 0.09974923719619255 RLLHEMILV 9 Unmodified _RLLHEMILV_ 0 0 0 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 ENSG00000129083|ENST00000439561|COPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3378295898438 2 562.336444 1122.65834 1.2752 0.00071707 0.64573 0.00036312 1.9209 0.0010802 562.3370184571442 95.123 0.15011 88.947 88.854 89.004 -6.1757 12 7 2 0 0 0 0.40476 1 63003 63003 12.241 1.4167 1 10194000 53029 4113 35773 36576 61594 61594 0.10191228284611498 RLLHEVQEL 9 Unmodified _RLLHEVQEL_ 0 0 0 ENST00000552390.5_1_12:57926966-57928919:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2;ENST00000547345.5_1_12:57928805-57940846:-|nuORF ENST00000552390.5_1_12:57926966-57928919:-|nuORF ENST00000552390.5_1_12:57926966-57928919:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8243408203125 2 568.824755 1135.63496 NaN NaN NaN NaN NaN NaN NaN 35.603 1 35.603 35.103 36.103 0 0 0 0 0.71962 1 18832 18832 8.7454 4.4162 1 53030 8495 35774 36577 61595 61595 0.07256505771670163 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5851135253906 3 378.585015 1132.73321 0.083681 3.1681E-05 0.14156 5.3594E-05 0.22524 8.5274E-05 378.58511145546765 34.535 0.21315 34.562 34.435 34.648 0.027405 24 9 3 0 0 0 0.058763 1 18186 18186 42.835 20.177 1 3320600 53031 389 35775 36578 61596 61596 0.17215734087494639 RLLKSKLYL 9 Unmodified _RLLKSKLYL_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5852966308594 3 378.585015 1132.73321 1.6798 0.00063593 -0.29553 -0.00011188 1.3842 0.00052404 378.5849510240091 89.292 0.44464 83.116 82.846 83.291 -6.1757 74 24 4 0 0 0 0.058763 2 58813 58813;58944 42.835 25.393 1 94809000 53032 389 35775 36578 61597;61598 61597 0.17215734087494639 RLLLHLEEL 9 Unmodified _RLLLHLEEL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2331237792969 3 379.232641 1134.67609 -0.11682 -4.4301E-05 1.0676 0.00040486 0.95075 0.00036055 379.23301529763125 61.43 0.19276 60.941 60.858 61.051 -0.48932 12 8 2 0 0 0 0.51218 1 33476 33476 10.8 0 1 1139500 53033 6383 35776 36579 61599 61599 0.11414266811129892 RLLLHLEEL 9 Unmodified _RLLLHLEEL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MSMS AL20221201_MKP_PDAC_01 4 568.3456420898438 2 568.345323 1134.67609 NaN NaN NaN NaN NaN NaN NaN 95.251 1 89.075 88.575 89.575 -6.1757 0 0 0 0.12343 1 63090 63090 39.95 0 1 53034 6383 35776 36579 61600 61600 0.11414266811129892 RLLLIWPVLRR 11 Unmodified _RLLLIWPVLRR_ 0 0 0 ENST00000380588.4_1_21:41163939-41173276:+|nuORF ENST00000380588.4_1_21:41163939-41173276:+|nuORF ENST00000380588.4_1_21:41163939-41173276:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 717.9737548828125 2 717.974631 1433.93471 NaN NaN NaN NaN NaN NaN NaN 17.096 1 17.101 16.601 17.601 0.0050564 0 0 0 0.9435 1 8607 8607 0 0 1 53035 12600 35777 36580 61601 61601 0.23509842843850492 RLLLKIPYGS 10 Unmodified _RLLLKIPYGS_ 0 0 0 ENST00000342409.3_1_10:13735712-14050160:-|nuORF ENST00000342409.3_1_10:13735712-14050160:-|nuORF ENST00000342409.3_1_10:13735712-14050160:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3633422851562 2 580.363516 1158.71248 1.5724 0.00091254 -1.1522 -0.00066871 0.42014 0.00024383 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.72292 1 71423 71423 0.35063 0.35063 1 10927000 53036 11981 35778 36581 61602 61602 0.13947143707832765 RLLLLPKEDV 10 Unmodified _RLLLLPKEDV_ 0 0 0 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 nc|ENSG00000291317|P0DTL5|TMEM276 MSMS AL20221201_MKP_PDAC_01 4 399.5816955566406 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 12.202 1 9.7205 9.2205 10.221 -2.482 0 0 0 1.0048 1 6163 6163 0.13989 0.04505 1 53037 16646 35779 36582 61603 61603 0.14403109016689086 RLLNFDTEL 9 Unmodified _RLLNFDTEL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8035888671875 2 560.803488 1119.59242 0.49239 0.00027614 0.64212 0.0003601 1.1345 0.00063624 560.8036856092913 66.293 0.29309 66.293 66.153 66.446 0 29 12 3 0 0 0 0.082934 1 36949 36949 39.95 13.682 1 4544100 53038 8367 35780 36583 61604 61604 0.03741110643431966 RLLNFDTEL 9 Unmodified _RLLNFDTEL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8043212890625 2 560.803488 1119.59242 0.43053 0.00024144 0.24307 0.00013632 0.6736 0.00037776 560.8035500995538 66.745 0.32795 66.262 66.09 66.418 -0.48323 50 15 4 0 0 0 0.12357 1 36426 36426 39.95 13.682 1 17303000 53039 8367 35780 36583 61605 61605 0.03741110643431966 RLLNFDTEL 9 Unmodified _RLLNFDTEL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.803466796875 2 560.803488 1119.59242 1.3271 0.00074422 -0.24018 -0.00013469 1.0869 0.00060953 560.8032799376683 90.862 0.63699 84.686 84.474 85.111 -6.1757 92 37 3 0 0 0 0.026499 2 60164 60029;60164 62.573 16.873 1 31163000 53040 8367 35780 36583 61606;61607 61607 0.03741110643431966 RLLNILMQL 9 Oxidation (M) _RLLNILM(Oxidation (M))QL_ RLLNILM(1)QL RLLNILM(71)QL 0 0 1 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3424682617188 2 565.341726 1128.6689 0.38576 0.00021809 -0.037436 -2.1164E-05 0.34833 0.00019692 565.3419204974297 80.091 0.25235 80.149 79.932 80.185 0.057587 22 10 3 0 0 0 0.013323 1 44205 44205 71.134 33.16 1 16024000 53041 6242 35781 36584 61608 61608 1108 0.10971210939055709 RLLNILMQL 9 Oxidation (M) _RLLNILM(Oxidation (M))QL_ RLLNILM(1)QL RLLNILM(71)QL 0 0 1 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3428955078125 2 565.341726 1128.6689 0.4651 0.00026294 -0.13587 -7.6813E-05 0.32923 0.00018613 565.3419878097359 80.409 0.20116 80.467 80.384 80.586 0.057587 15 8 2 0 0 0 0.013323 1 44466 44466 71.134 37.031 1 10956000 53042 6242 35781 36584 61609 61609 1108 0.10971210939055709 RLLPKEQY 8 Unmodified _RLLPKEQY_ 0 0 0 REV__nc|ENSG00000134824|O95864-4|FADS2 REV__nc|ENSG00000134824|O95864-4|FADS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8028564453125 2 523.803291 1045.59203 NaN NaN NaN NaN NaN NaN NaN 94.296 1 93.876 93.376 94.376 -0.42044 0 0 0 0.97444 1 51521 51521 0.79363 0 1 + 53043 20015 35782 36585 61610 61610 0.07105735714230832 RLLPQVDSV 9 Unmodified _RLLPQVDSV_ 0 0 0 ENSG00000141664|ENST00000269499|ZCCHC2 ENSG00000141664|ENST00000269499|ZCCHC2 ENSG00000141664|ENST00000269499|ZCCHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8006591796875 2 513.800749 1025.58694 0.68895 0.00035399 -0.48546 -0.00024943 0.2035 0.00010456 513.8003644690698 49.561 0.25604 49.168 49.077 49.333 -0.3923 21 12 2 0 0 0 0.023481 1 26669 26669 60.074 20.124 1 3144600 53044 5364 35783 36586 61611 61611 0.07517431851601941 RLLQEQHQL 9 Unmodified _RLLQEQHQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8878173828125 3 388.887645 1163.64111 -0.50359 -0.00019584 0.18729 7.2836E-05 -0.3163 -0.000123 388.88775168271457 25.71 0.31129 25.71 25.528 25.84 0 42 14 4 0 0 0 0.047788 1 13159 13159 35.612 7.1177 1 15409000 53045 8367 35784 36587 61612 61612 0.06583024003180071 RLLQEQHQL 9 Unmodified _RLLQEQHQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.8283081054688 2 582.827829 1163.64111 -0.37571 -0.00021897 0.15036 8.7632E-05 -0.22535 -0.00013134 582.827866822009 25.726 0.22794 25.726 25.591 25.819 0 36 10 4 0 0 0 0.044011 1 13162 13162 47.749 9.5731 1 10038000 53046 8367 35784 36587 61613 61613 0.06583024003180071 RLLQEQHQL 9 Unmodified _RLLQEQHQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8885803222656 3 388.887645 1163.64111 0.95562 0.00037163 0.35451 0.00013786 1.3101 0.00050949 388.8876771921236 29.464 0.27901 26.162 26.078 26.357 -3.3016 32 18 2 0 0 0 2.2236E-06 2 16532 16532;16670 132.13 47.612 1 96012000 53047 8367 35784 36587 61614;61615 61614 0.06583024003180071 RLLQEQHQL 9 Unmodified _RLLQEQHQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8282470703125 2 582.827829 1163.64111 0.58558 0.00034129 0.40666 0.00023701 0.99224 0.0005783 582.828109397884 29.499 0.24459 26.198 26.061 26.305 -3.3016 26 16 2 0 0 0 0.012668 1 16562 16562 72.968 0 1 49670000 53048 8367 35784 36587 61616 61616 0.06583024003180071 RLLQEQHQL 9 Unmodified _RLLQEQHQL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 582.8289184570312 2 582.827829 1163.64111 NaN NaN NaN NaN NaN NaN NaN 29.662 1 26.36 25.86 26.86 -3.3016 0 0 0 0.041018 1 16695 16695 61.602 0 1 53049 8367 35784 36587 61617 61617 0.06583024003180071 RLLQSNPVL 9 Unmodified _RLLQSNPVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.31689453125 2 520.316566 1038.61858 0.53527 0.00027851 0.26611 0.00013846 0.80138 0.00041697 520.3165922412611 47.662 0.18209 47.31 47.165 47.347 -0.3526 13 8 2 0 0 0 0.25681 1 25555 25555 19.257 9.1831 1 2061400 53050 10015 35785 36588 61618 61618 0.10081424605550637 RLLQSNPVL 9 Unmodified _RLLQSNPVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3171997070312 2 520.316566 1038.61858 0.77569 0.0004036 0.34237 0.00017814 1.1181 0.00058174 520.3167282846111 47.339 0.29786 47.301 47.157 47.455 -0.038643 28 13 3 0 0 0 0.047788 1 25476 25476 45.7 16.618 1 5491400 53051 10015 35785 36588 61619 61619 0.10081424605550637 RLLQTLPQL 9 Unmodified _RLLQTLPQL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8273315429688 2 541.340041 1080.66553 0.70535 0.00038184 1.723 0.00093274 2.4284 0.0013146 541.3404382724185 64.643 0.23987 64.641 64.518 64.758 -0.0014801 26 11 3 0 0 0 0.15936 1 35363 35363 27.629 8.3718 1 3855200 53052 4011 35786 36589 61620 61620 0.12842284156727146 RLLRDPGF 8 Unmodified _RLLRDPGF_ 0 0 0 ENST00000368347.8_1_1:155294072-155294639:+|nuORF ENST00000368347.8_1_1:155294072-155294639:+|nuORF ENST00000368347.8_1_1:155294072-155294639:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2841796875 2 487.282526 972.550499 0.48102 0.00023439 0.39413 0.00019205 0.87515 0.00042645 487.2826934131462 48.768 0.29407 48.724 48.573 48.867 -0.04369 35 14 3 0 0 0 0.79887 1 26399 26399 7.2892 0 1 12854000 53053 12267 35787 36590 61621 61621 0.06312599745569969 RLLRKPARRPL 11 Unmodified _RLLRKPARRPL_ 0 0 0 REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF REV__ENST00000609879.1_1_1:149399040-149399154:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 459.3102111816406 3 459.308878 1374.90481 NaN NaN NaN NaN NaN NaN NaN 104.62 1 98.448 97.948 98.948 -6.1757 0 0 0 0.94337 1 70052 70052 0.094841 0 1 + 53054 29335 35788 36591 61622 61622 0.23234903898537596 RLLSFVVLA 9 Unmodified _RLLSFVVLA_ 0 0 0 ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;chr1:156020167-156020337|44|10.25|0.31|5.04|-|0|SSR2,None|1;ENSG00000163479|ENST00000295702|SSR2 ENST00000472898.5_1_1:155981561-155990687:-|nuORF ENST00000472898.5_1_1:155981561-155990687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3269348144531 2 509.326402 1016.63825 2.0603 0.0010494 -0.61817 -0.00031485 1.4422 0.00073454 509.32600197099015 81.74 0.42181 81.8 81.584 82.006 0.059929 48 16 4 0 0 0 0.10247 1 45231 45231 32.786 9.6373 1 29559000 53055 13915 35789 36592 61623 61623 0.1305980061632681 RLLSPLFHL 9 Unmodified _RLLSPLFHL_ 0 0 0 REV__ENST00000561298.1_1_11:125201665-125201761:+|nuORF REV__ENST00000561298.1_1_11:125201665-125201761:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 548.338134765625 2 548.337301 1094.66005 NaN NaN NaN NaN NaN NaN NaN 102.94 1 96.769 96.269 97.269 -6.1757 0 0 0 0.84369 1 69055 69055 2.3027 0 1 + 53056 28838 35790 36593 61624 61624 0.11650605364889088 RLMDIKSRL 9 Unmodified _RLMDIKSRL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8935852050781 3 377.893742 1130.6594 1.3016 0.00049185 0.36732 0.00013881 1.6689 0.00063066 377.89398607357754 39.09 0.2445 34.639 34.445 34.689 -4.4509 24 15 2 0 0 0 0.17124 1 23169 23169 25.997 1.1158 1 11876000 + 53057 167 35791 36594 61625 61625 0.0992944265353799 RLMDIKSRL 9 Unmodified _RLMDIKSRL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MSMS AL20221201_MKP_PDAC_01 4 377.8943481445312 3 377.893742 1130.6594 NaN NaN NaN NaN NaN NaN NaN 75.766 1 69.591 69.091 70.091 -6.1757 0 0 0 0.38239 1 49555 49555 20.871 3.008 1 + 53058 167 35791 36594 61626 61626 0.0992944265353799 RLMFEYQTL 9 Unmodified _RLMFEYQTL_ 0 0 0 nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 nc|ENSG00000158019|Q9NXR7-4|BABAM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.87451171875 3 400.874236 1199.60088 NaN NaN NaN NaN NaN NaN NaN 14.526 1 14.526 14.026 15.026 0 0 0 0 0.85798 1 6912 6912 0.23584 0 1 53059 6559 35792 36595 61627 61627 0.009063412883961064 RLMKPQRE 8 Unmodified _RLMKPQRE_ 0 0 0 ENST00000369102.5_2_1:150241212-150245204:+|nuORF ENST00000369102.5_2_1:150241212-150245204:+|nuORF ENST00000369102.5_2_1:150241212-150245204:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.3009643554688 2 529.300393 1056.58623 NaN NaN NaN NaN NaN NaN NaN 103.49 1 97.318 96.818 97.818 -6.1757 0 0 0 0.97444 1 69386 69386 2.3027 0 1 53060 12296 35793 36596 61628 61628 0.0602031393091238 RLMNETTAV 9 Unmodified _RLMNETTAV_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;ENSG00000164070|ENST00000296464|HSPA4L ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7664794921875 2 517.768591 1033.52263 1.3719 0.00071032 -2.5036 -0.0012963 -1.1317 -0.00058595 517.7666291494688 33.806 0.30494 29.821 29.589 29.894 -3.9853 25 16 2 0 0 0 0.078314 1 19351 19351 38.176 14.155 1 15694000 53061 8008 35794 36597 61629 61629 0.007209087031469608 RLMNETTAVAL 11 Oxidation (M) _RLM(Oxidation (M))NETTAVAL_ RLM(1)NETTAVAL RLM(42)NETTAVAL 0 0 1 ENSG00000170606|ENST00000304858|HSPA4;ENSG00000164070|ENST00000296464|HSPA4L ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.8268432617188 2 617.826637 1233.63872 0.36068 0.00022284 -0.022213 -1.3724E-05 0.33847 0.00020912 617.8268718845666 39.751 0.31653 39.751 39.616 39.932 0 38 15 3 0 0 0 0.10142 1 21310 21310 42.312 22.951 1 4190200 53062 8008 35795 36598 61630 61630 1364 0.03124807483186487 RLMNETTAVAL 11 Unmodified _RLMNETTAVAL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4;ENSG00000164070|ENST00000296464|HSPA4L ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.828857421875 2 609.82918 1217.64381 0.65982 0.00040238 -0.31166 -0.00019006 0.34817 0.00021232 609.8293730396249 54.72 0.21413 48.854 48.763 48.977 -5.8653 19 12 2 0 0 0 0.10142 1 34772 34772 42.312 18.523 1 10811000 53063 8008 35795 36599 61631 61631 0.04369111345818055 RLMPENPTYAE 11 Unmodified _RLMPENPTYAE_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8810119628906 3 440.879939 1319.61799 -0.59244 -0.00026119 1.8351 0.00080904 1.2426 0.00054785 440.88077445466917 18.14 0.077999 18.154 18.125 18.203 0.013865 21 10 3 0 0 0 0.73545 1 9086 9086 0.92553 0.22787 1 555880 53064 10177 35796 36600 61632 61632 -0.029037828964646906 RLMPENPTYAE 11 Unmodified _RLMPENPTYAE_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.8811340332031 3 440.879939 1319.61799 0.31898 0.00014063 0.96226 0.00042424 1.2812 0.00056487 440.8805668332914 15.983 0.31772 15.988 15.814 16.131 0.0050564 79 26 4 0 0 0 0.70957 1 8019 8019 3.3557 1.103 1 4458100 53065 10177 35796 36600 61633 61633 -0.029037828964646906 RLMPENPTYAE 11 Unmodified _RLMPENPTYAE_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.880126953125 3 440.879939 1319.61799 0.35302 0.00015564 0.49702 0.00021913 0.85004 0.00037476 440.8802775388306 18.361 0.15861 18.367 18.27 18.429 0.0060482 26 8 5 0 0 0 0.53099 1 9295 9295 14.838 4.5227 1 12895000 53066 10177 35796 36600 61634 61634 -0.029037828964646906 RLMPENPTYAE 11 Unmodified _RLMPENPTYAE_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.8809814453125 3 440.879939 1319.61799 0.31426 0.00013855 1.0306 0.00045435 1.3448 0.0005929 440.8805552461834 16.567 0.28488 14.01 13.868 14.152 -2.557 122 41 4 0 0 0 0.70957 1 8644 8644 3.3557 1.103 1 23163000 53067 10177 35796 36600 61635 61635 -0.029037828964646906 RLMPENPTYAE 11 Unmodified _RLMPENPTYAE_ 0 0 0 nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1 nc|ENSG00000198862|O94822-3|LTN1 nc|ENSG00000198862|O94822-3|LTN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 440.879939 1319.61799 0.31898 0.00014063 0.96226 0.00042424 1.2812 0.00056487 440.8805668332914 15.983 0.31772 15.988 15.814 16.131 0.0050564 0 0 NaN 3.3557 79 26 4 NaN NaN NaN NaN 0 NaN NaN 0 4458100 53068 10177 35796 36600 -0.029037828964646906 RLMPWIIF 8 Unmodified _RLMPWIIF_ 0 0 0 ENST00000483824.5_1_1:40420832-40434017:+|nuORF;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A ENST00000483824.5_1_1:40420832-40434017:+|nuORF ENST00000483824.5_1_1:40420832-40434017:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.1988525390625 2 538.309698 1074.60484 -0.038085 -2.0502E-05 0.0066117 3.5591E-06 -0.031473 -1.6942E-05 538.3108135090719 41.88 0.43776 41.88 41.668 42.105 0 38 22 2 0 0 0 8.7369 1 22618 22618 13.508 4.1604 1 4277200 53069 7755 35797 36601 61636 61636 0.07052475572754702 RLMRYNDF 8 Unmodified _RLMRYNDF_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7764282226562 2 557.776751 1113.53895 NaN NaN NaN NaN NaN NaN NaN 96.131 1 95.827 95.327 96.327 -0.30472 0 0 0 0.97444 1 52501 52501 2.5775 0 1 53070 6096 35798 36602 61637 61637 -0.013279653400786628 RLMTRRPPRRS 11 Unmodified _RLMTRRPPRRS_ 0 0 0 REV__nc|ENSG00000160131|Q3ZAQ7-2|VMA21 REV__nc|ENSG00000160131|Q3ZAQ7-2|VMA21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.9486999511719 3 475.949244 1424.8259 1.1475 0.00054614 -2.8187 -0.0013415 -1.6712 -0.0007954 475.9476676139244 20.141 0.29498 17.484 17.312 17.607 -2.6564 46 20 3 0 0 0 0.69509 1 10772 10772 4.7159 2.0847 1 7218600 + 53071 29732 35799 36603 61638 61638 0.13048308601923964 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566833.1_1_15:43477651-43481519:+|nuORF nc|ENSG00000166946|O95273-2|CCNDBP1 nc|ENSG00000166946|O95273-2|CCNDBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7769470214844 2 486.777274 971.539994 -0.75164 -0.00036588 0.47544 0.00023144 -0.2762 -0.00013445 486.7773906228812 32.859 0.27438 32.859 32.714 32.988 0 35 13 4 0 0 0 0.078314 1 17156 17156 38.176 2.0485 1 16770000 53072 7553 35800 36604 61639 61639 0.05308572300475589 RLNEAAVTV 9 Unmodified _RLNEAAVTV_ 0 0 0 nc|ENSG00000166946|O95273-2|CCNDBP1;ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566833.1_1_15:43477651-43481519:+|nuORF nc|ENSG00000166946|O95273-2|CCNDBP1 nc|ENSG00000166946|O95273-2|CCNDBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7774353027344 2 486.777274 971.539994 1.2374 0.00060236 -0.52182 -0.00025401 0.71562 0.00034835 486.7770622511369 37.616 0.469 33.247 32.987 33.456 -4.3689 63 27 3 0 0 0 0.085319 1 22143 22143 36.506 0.37917 1 63247000 53073 7553 35800 36604 61640 61640 0.05308572300475589 RLNEKNYEL 9 Unmodified _RLNEKNYEL_ 0 0 0 nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENSG00000047249|ENST00000359530|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF nc|ENSG00000047249|Q9UI12-2|ATP6V1H nc|ENSG00000047249|Q9UI12-2|ATP6V1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5436706542969 3 393.543655 1177.60914 -0.65648 -0.00025835 -0.18347 -7.2203E-05 -0.83995 -0.00033056 393.5435812073817 27.074 0.22347 27.074 26.972 27.196 0 22 10 3 0 0 0 0.028475 1 13928 13928 43.982 30.367 1 5173300 53074 680 35801 36605 61641 61641 0.027436115293767216 RLNESTYVL 9 Unmodified _RLNESTYVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7913818359375 2 547.795663 1093.57677 0.1105 6.0532E-05 -0.93121 -0.00051011 -0.82071 -0.00044958 547.7949330412982 43.846 0.25056 43.846 43.723 43.974 0 25 14 2 0 0 0 0.023481 1 23818 23818 60.074 10.52 1 58676000 53075 16188 35802 36606 61642 61642 0.03372824126381602 RLNESTYVL 9 Unmodified _RLNESTYVL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7964477539062 2 547.795663 1093.57677 0.58265 0.00031917 0.57205 0.00031337 1.1547 0.00063254 547.7958680406831 49.02 0.31012 43.624 43.407 43.717 -5.3961 50 19 3 0 0 0 0.078314 2 30609 30472;30609 38.176 11.907 1 177120000 53076 16188 35802 36606 61643;61644 61644 0.03372824126381602 RLNFQEKK 8 Unmodified _RLNFQEKK_ 0 0 0 ENSG00000171295|ENST00000304060|ZNF440;nc|ENSG00000198429|Q9UC07-2|ZNF69;ENSG00000197054|ENST00000358987|ZNF763;nc|ENSG00000197054|Q0D2J5-2|ZNF763;ENSG00000196757|ENST00000254321|ZNF700;ENSG00000198429|ENST00000429654|ZNF69 ENSG00000171295|ENST00000304060|ZNF440;ENSG00000198429|ENST00000429654|ZNF69 ENSG00000171295|ENST00000304060|ZNF440 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8065795898438 2 531.806365 1061.59818 NaN NaN NaN NaN NaN NaN NaN 30.737 1 30.767 30.267 31.267 0.030106 0 0 0 0.97444 1 16080 16080 3.9444 0.3479 1 53077 8085;10090 35803 36607 61645 61645 0.06984253945756791 RLNHDIRYH 9 Unmodified _RLNHDIRYH_ 0 0 0 REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8592224121094 3 408.551256 1222.63194 -0.66709 -0.00027254 0.0334 1.3646E-05 -0.63369 -0.00025889 408.5511130539082 15.3 0.15002 15.3 15.222 15.372 0 53 34 3 0 0 0 0.21906 1 7318 7318 0.20686 0 1 766930 + 53078 27884 35804 36608 61646 61646 0.029526754374956 RLNKVISEL 9 Unmodified _RLNKVISEL_ 0 0 0 ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2 ENST00000524867.1_1_11:810234-811767:+|nuORF ENST00000524867.1_1_11:810234-811767:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.329833984375 2 536.329673 1070.64479 -0.068016 -3.6479E-05 0.99395 0.00053308 0.92593 0.00049661 536.3301758364739 38.423 0.19049 38.136 38.026 38.217 -0.28687 21 8 3 0 0 0 0.06294 1 20222 20222 41.84 16.44 1 2102900 53079 8695 35805 36609 61647 61647 0.11229693777045213 RLNKVISEL 9 Unmodified _RLNKVISEL_ 0 0 0 ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2 ENST00000524867.1_1_11:810234-811767:+|nuORF ENST00000524867.1_1_11:810234-811767:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8892822265625 3 357.888874 1070.64479 -0.012996 -4.6511E-06 1.2163 0.00043529 1.2033 0.00043064 357.889337783016 38.427 0.23639 38.14 38.003 38.239 -0.28687 18 10 2 0 0 0 0.5029 1 20262 20262 4.5289 2.0304 1 1421300 53080 8695 35805 36609 61648 61648 0.11229693777045213 RLNLEHIY 8 Unmodified _RLNLEHIY_ 0 0 0 ENST00000193322.7_2_6:108370618-108372293:-|nuORF ENST00000193322.7_2_6:108370618-108372293:-|nuORF ENST00000193322.7_2_6:108370618-108372293:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2928466796875 2 529.293091 1056.57163 NaN NaN NaN NaN NaN NaN NaN 27.197 1 27.152 26.652 27.652 -0.045601 0 0 0 0.93394 1 14010 14010 12.532 0 1 53081 10983 35806 36610 61649 61649 0.04560565054430299 RLNNIRVLL 9 Unmodified _RLNNIRVLL_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8590087890625 2 555.858932 1109.70331 0.056284 3.1286E-05 -0.22592 -0.00012558 -0.16964 -9.4296E-05 555.8589235394135 51.484 0.17722 51.43 51.361 51.538 -0.053871 14 8 2 0 0 0 0.32871 1 27886 27886 15.847 7.937 1 2479600 53082 9403 35807 36611 61650 61650 0.152847951422018 RLNNIRVLL 9 Unmodified _RLNNIRVLL_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.9081420898438 3 370.90838 1109.70331 -0.16461 -6.1054E-05 -0.17565 -6.5149E-05 -0.34025 -0.0001262 370.9082319907707 51.505 0.29485 51.451 51.342 51.637 -0.053871 20 14 2 0 0 0 0.43463 1 27904 27904 15.248 10.351 1 1285600 53083 9403 35807 36611 61651 61651 0.152847951422018 RLNPHDIRL 9 Unmodified _RLNPHDIRL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7176818847656 3 378.556118 1132.64652 0.090049 3.4089E-05 0.046769 1.7705E-05 0.13682 5.1793E-05 378.89044542939143 34.482 0.26078 34.51 34.367 34.628 0.027401 15 11 2 0 0 0 0.1986 1 18208 18208 9.544 5.0151 1 1452900 53084 3224 35808 36612 61652 61652 0.08550747585650242 RLNPHRSLL 9 Unmodified _RLNPHRSLL_ 0 0 0 ENSG00000161677|ENST00000598418|JOSD2 ENSG00000161677|ENST00000598418|JOSD2 ENSG00000161677|ENST00000598418|JOSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2249145507812 3 369.22448 1104.65161 0.10439 3.8543E-05 -0.15768 -5.822E-05 -0.053293 -1.9677E-05 369.2242517032213 22.31 0.15834 22.328 22.211 22.37 0.01749 10 6 2 0 0 0 0.21589 1 11455 11455 21.59 14.488 1 765880 53085 6804 35809 36613 61653 61653 0.10347051448275124 RLNPHRSLL 9 Unmodified _RLNPHRSLL_ 0 0 0 ENSG00000161677|ENST00000598418|JOSD2 ENSG00000161677|ENST00000598418|JOSD2 ENSG00000161677|ENST00000598418|JOSD2 MSMS AL20221201_MKP_PDAC_01 4 369.2243347167969 3 369.22448 1104.65161 NaN NaN NaN NaN NaN NaN NaN 25.705 1 22.754 22.254 23.254 -2.9511 0 0 0 0.075356 1 14091 14091 49.742 19.901 1 53086 6804 35809 36613 61654 61654 0.10347051448275124 RLNPLVLLL 9 Unmodified _RLNPLVLLL_ 0 0 0 ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L ENSG00000104881|ENST00000360957|PPP1R13L MSMS AL20221201_MKP_PDAC_01 4 525.8555297851562 2 525.855327 1049.6961 NaN NaN NaN NaN NaN NaN NaN 101.23 1 95.05 94.55 95.55 -6.1757 0 0 0 0.26667 1 67883 67883 26.884 1.4843 1 53087 2248 35810 36614 61655 61655 0.17324062541752028 RLNYMSMKQVY 11 Unmodified _RLNYMSMKQVY_ 0 0 0 REV__ENSG00000113083|ENST00000231004|LOX REV__ENSG00000113083|ENST00000231004|LOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.8587646484375 2 716.857415 1431.70028 1.8154 0.0013014 -2.8384 -0.0020347 -1.023 -0.00073332 716.853429760558 62.517 0.48921 56.342 56.248 56.737 -6.1757 42 24 2 0 0 0 0.35681 1 40388 40388 23.79 3.3752 1 12757000 + 53088 18851 35811 36615 61656 61656 0.0016941591084105312 RLPAALLLL 9 Unmodified _RLPAALLLL_ 0 0 0 REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.3371887207031 2 490.33677 978.658987 0.88507 0.00043398 -0.016982 -8.327E-06 0.86809 0.00042565 490.3367297758868 90.495 0.55079 90.537 90.272 90.823 0.042175 58 19 4 0 0 0 0.06187 1 50360 50360 42.095 0 1 174900000 + 53089 29276 35812 36616 61657 61657 0.16880390996004735 RLPARIPGL 9 Unmodified _RLPARIPGL_ 0 0 0 ENST00000311922.3_1_8:126442809-126443172:+|nuORF ENST00000311922.3_1_8:126442809-126443172:+|nuORF ENST00000311922.3_1_8:126442809-126443172:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8229370117188 2 496.821818 991.629084 0.17912 8.899E-05 0.066539 3.3058E-05 0.24566 0.00012205 496.821805231629 38.186 0.26608 38.203 38.048 38.314 0.01704 27 11 3 0 0 0 0.55144 1 20358 20358 4.3292 0 1 7485700 53090 11700 35813 36617 61658 61658 0.13293452050652377 RLPAWQPLL 9 Unmodified _RLPAWQPLL_ 0 0 0 ENSG00000182107|ENST00000555868|TMEM30B ENSG00000182107|ENST00000555868|TMEM30B ENSG00000182107|ENST00000555868|TMEM30B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.328125 2 547.329476 1092.6444 0.24432 0.00013372 -0.35304 -0.00019323 -0.10872 -5.9505E-05 547.3292897249179 75.122 0.8308 75.168 74.94 75.771 0.045967 95 39 4 0 0 0 0.038285 3 41350 41350;41462;41571 50.855 0 1 26803000 53091 9017 35814 36618 61659;61660;61661 61659 0.10178318847852097 RLPAWQPLL 9 Unmodified _RLPAWQPLL_ 0 0 0 ENSG00000182107|ENST00000555868|TMEM30B ENSG00000182107|ENST00000555868|TMEM30B ENSG00000182107|ENST00000555868|TMEM30B MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3303833007812 2 547.329476 1092.6444 1.0861 0.00059443 -0.035306 -1.9324E-05 1.0508 0.00057511 547.3294359218735 96.207 0.38371 90.032 89.801 90.185 -6.1757 73 23 4 0 0 0 0.038285 2 63663 63663;63795 50.855 0 1 208440000 53092 9017 35814 36618 61662;61663 61662 0.10178318847852097 RLPDIFEAQI 10 Unmodified _RLPDIFEAQI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.3308715820312 2 601.332413 1200.65027 NaN NaN NaN NaN NaN NaN NaN 77.497 1 77.014 76.514 77.514 -0.4826 0 0 0 0.6626 1 42426 42426 20.581 7.5385 1 + 53093 199 35815 36619 61664 61664 0.057973725688498234 RLPDIFEAQI 10 Unmodified _RLPDIFEAQI_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.33251953125 2 601.332413 1200.65027 0.45606 0.00027424 1.592 0.00095735 2.0481 0.0012316 601.333390441464 96.129 0.16331 89.953 89.862 90.025 -6.1757 13 9 2 0 0 0 0.084474 1 63734 63734 49.527 20.446 1 9042600 + 53094 199 35815 36619 61665 61665 0.057973725688498234 RLPEAIEEV 9 Unmodified _RLPEAIEEV_ 0 0 0 ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF ENSG00000137106|ENST00000318158|GRHPR ENSG00000137106|ENST00000318158|GRHPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2904052734375 2 528.290214 1054.56587 0.91656 0.00048421 -0.41872 -0.00022121 0.49784 0.000263 528.2899639051134 47.662 0.5088 47.662 47.427 47.936 0 75 23 5 0 0 0 0.05483 2 26028 26028;26139 43.772 3.8227 1 42408000 53095 4900 35816 36620 61666;61667 61666 0.04077421752072041 RLPEAIEEV 9 Unmodified _RLPEAIEEV_ 0 0 0 ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF ENSG00000137106|ENST00000318158|GRHPR ENSG00000137106|ENST00000318158|GRHPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2901611328125 2 528.290214 1054.56587 NaN NaN NaN NaN NaN NaN NaN 47.917 1 47.917 47.417 48.417 0 0 0 0 0.73776 1 26256 26256 8.1555 0 1 53096 4900 35816 36620 61668 61668 0.04077421752072041 RLPEEVPSF 9 Unmodified _RLPEEVPSF_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.284912109375 2 537.284931 1072.55531 0.76477 0.0004109 -0.70879 -0.00038082 0.055983 3.0079E-05 537.2845770462147 54.043 0.42661 54.043 53.82 54.246 0 73 19 5 0 0 0 0.078314 1 29951 29951 38.176 15.439 1 106330000 53097 4784 35817 36621 61669 61669 0.021934390976412033 RLPEEVPSF 9 Unmodified _RLPEEVPSF_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.284912109375 2 537.284931 1072.55531 -0.076682 -4.12E-05 0.30279 0.00016269 0.22611 0.00012149 537.2849003284382 54.642 0.41143 54.176 53.948 54.36 -0.46664 64 20 4 0 0 0 0.013041 2 29627 29530;29627 71.922 35.795 1 61795000 53098 4784 35817 36621 61670;61671 61671 0.021934390976412033 RLPEEVPSF 9 Unmodified _RLPEEVPSF_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2845458984375 2 537.284931 1072.55531 0.031434 1.6889E-05 0.83675 0.00044957 0.86818 0.00046646 537.2851254111315 54.33 0.31717 54.263 54.021 54.338 -0.066936 23 15 2 0 0 0 0.2324 1 29523 29523 20.415 6.5085 1 2218700 53099 4784 35817 36621 61672 61672 0.021934390976412033 RLPEEVPSF 9 Unmodified _RLPEEVPSF_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000486616.5_1_3:38045275-38047830:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2853393554688 2 537.284931 1072.55531 1.0086 0.00054189 0.96664 0.00051936 1.9752 0.0010612 537.2848954266386 60.661 0.89885 54.513 53.985 54.884 -6.1478 125 47 4 0 0 0 0.014417 3 39024 39024;39150;39275 69.105 21.356 1 293410000 53100 4784 35817 36621 61673;61674;61675 61673 0.021934390976412033 RLPEEWSQW 9 Unmodified _RLPEEWSQW_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.8004760742188 2 615.798737 1229.58292 -0.095023 -5.8515E-05 0.75743 0.00046643 0.66241 0.00040791 615.799020588393 61.299 0.37431 60.809 60.635 61.009 -0.48932 48 17 4 0 0 0 0.024507 2 33359 33359;33455 72.968 52.514 1 7539000 53101 2406 35818 36622 61676;61677 61676 -0.022686576421165228 RLPEIYIQL 9 Unmodified _RLPEIYIQL_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MSMS AL20221201_MKP_PDAC_01 4 572.8411254882812 2 572.839874 1143.66519 NaN NaN NaN NaN NaN NaN NaN 96.576 1 90.4 89.9 90.9 -6.1757 0 0 0 0.061499 1 64003 64003 57.722 8.1677 1 53102 2167 35819 36623 61678 61678 0.09910864436847078 RLPENTFNI 9 Unmodified _RLPENTFNI_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2952270507812 2 552.29583 1102.57711 0.45912 0.00025357 2.0534 0.0011341 2.5125 0.0013876 552.2971140294237 53.024 0.60322 52.572 52.36 52.963 -0.45173 85 29 4 0 0 0 0.023481 2 28604 28604;28714 60.074 27.768 1 31330000 53103 5077 35820 36624 61679;61680 61679 0.029922438462335776 RLPENTFNI 9 Unmodified _RLPENTFNI_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2955932617188 2 552.29583 1102.57711 0.70715 0.00039056 0.36427 0.00020118 1.0714 0.00059174 552.2961856849665 52.699 0.22002 52.635 52.522 52.742 -0.063423 17 10 2 0 0 0 0.13231 1 28567 28567 29.841 2.9569 1 2110000 53104 5077 35820 36624 61681 61681 0.029922438462335776 RLPENTFNI 9 Unmodified _RLPENTFNI_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2958984375 2 552.29583 1102.57711 1.3982 0.0007722 -0.30088 -0.00016617 1.0973 0.00060603 552.2956880001832 58.57 0.63311 52.496 52.184 52.817 -6.0745 100 34 4 0 0 0 0.010611 3 37669 37409;37541;37669 78.728 40.754 1 117450000 53105 5077 35820 36624 61682;61683;61684 61684 0.029922438462335776 RLPENTFNI 9 Unmodified _RLPENTFNI_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 552.29583 1102.57711 0.40085 0.00022139 3.2767 0.0018097 3.6775 0.0020311 552.2980395250152 52.562 0.79661 52.562 52.243 53.039 0 -0.0045184 0.0031361 NaN 78.728 44 26 3 NaN NaN NaN NaN 0 NaN NaN 0 6305100 53106 5077 35820 36624 0.029922438462335776 RLPEQEERL 9 Unmodified _RLPEQEERL_ 0 0 0 nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000183629|ENST00000525590|GOLGA8G;ENSG00000261739|ENST00000562295|GOLGA8S nc|ENSG00000290359|Q0D2H9|GOLGA8DP;ENSG00000261739|ENST00000562295|GOLGA8S ENSG00000261739|ENST00000562295|GOLGA8S MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3193359375 2 585.317294 1168.62004 NaN NaN NaN NaN NaN NaN NaN 53.014 1 52.563 52.063 53.063 -0.45173 0 0 0 0.22437 1 28665 28665 29.082 5.2918 1 53107 6270;10844 35821 36625 61685 61685 0.042470139036595356 RLPERLTKF 9 Unmodified _RLPERLTKF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2365417480469 3 387.236385 1158.68733 -0.31517 -0.00012205 0.46594 0.00018043 0.15077 5.8383E-05 387.236561757011 31.757 0.25717 31.787 31.648 31.906 0.030106 27 11 3 0 0 0 0.060956 1 16630 16630 42.312 0 1 8958100 53108 2299 35822 36626 61686 61686 0.11433088905255318 RLPERLTKF 9 Unmodified _RLPERLTKF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 387.236385 1158.68733 1.6028 0.00062068 0.42507 0.0001646 2.0279 0.00078528 387.2367524281604 35.8 0.30017 31.607 31.44 31.741 -4.1928 -0.089772 -3.1844E-05 NaN 42.312 35 18 3 NaN NaN NaN NaN 0 NaN NaN 0 8806900 53109 2299 35822 36626 0.11433088905255318 RLPESFPEL 9 Unmodified _RLPESFPEL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2929077148438 2 544.292756 1086.57096 0.22941 0.00012487 -0.47941 -0.00026094 -0.25 -0.00013607 544.2922611976642 63.396 0.48877 63.396 63.17 63.659 0 62 24 3 0 0 0 0.020973 2 35291 35291;35388 62.573 26.446 1 12304000 53110 4921 35823 36627 61687;61688 61687 0.031137256147076187 RLPESFPEL 9 Unmodified _RLPESFPEL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2933959960938 2 544.292756 1086.57096 0.22827 0.00012425 -0.2317 -0.00012611 -0.0034331 -1.8686E-06 544.2924466992775 63.836 0.61312 63.351 63.083 63.696 -0.48512 96 31 4 0 0 0 0.013041 3 34729 34729;34831;34934 71.922 28.064 1 26269000 53111 4921 35823 36627 61689;61690;61691 61689 0.031137256147076187 RLPESFPEL 9 Unmodified _RLPESFPEL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.292756 1086.57096 0.056759 3.0893E-05 -3.632 -0.0019769 -3.5752 -0.001946 544.2898467592632 63.506 0.11254 63.019 62.969 63.082 -0.48617 -0.18839 -0.0033708 NaN 62.573 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 812780 53112 4921 35823 36627 0.031137256147076187 RLPESFPEL 9 Unmodified _RLPESFPEL_ 0 0 0 ENSG00000137269|ENST00000370888|LRRC1;nc|ENSG00000137269|Q9BTT6-2|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 ENSG00000137269|ENST00000370888|LRRC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 544.292756 1086.57096 0.51811 0.000282 -2.3562 -0.0012824 -1.838 -0.0010004 544.7937438195867 63.339 0.18289 63.317 63.259 63.442 -0.021614 -0.016825 -0.0021298 NaN 71.922 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1467200 53113 4921 35823 36627 0.031137256147076187 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.3031005859375 2 513.303124 1024.5917 0.48645 0.0002497 -0.56389 -0.00028944 -0.077433 -3.9747E-05 513.3027929906879 59.682 0.66804 59.682 59.355 60.023 0 96 30 4 0 0 0 0.009483 3 33240 33132;33240;33358 81.89 33.544 1 65831000 53114 2778 35824 36628 61692;61693;61694 61693 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.302490234375 2 513.303124 1024.5917 0.038554 1.979E-05 -1.0329 -0.00053021 -0.99438 -0.00051042 513.302508205202 60.127 0.85397 59.637 59.293 60.147 -0.49079 159 42 6 0 0 0 0.014417 5 32770 32566;32665;32770;32873;32991 69.105 31.131 1 1060599999.9999999 53115 2778 35824 36628 61695;61696;61697;61698;61699 61697 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3034057617188 2 513.303124 1024.5917 0.52456 0.00026926 -0.063798 -3.2748E-05 0.46076 0.00023651 513.3030294116724 59.729 0.57489 59.676 59.42 59.994 -0.053062 88 28 4 0 0 0 0.014417 3 32581 32475;32581;32696 69.105 22.615 1 75076000 53116 2778 35824 36628 61700;61701;61702 61701 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3034057617188 2 513.303124 1024.5917 0.35321 0.0001813 -0.18207 -9.3457E-05 0.17114 8.7847E-05 513.3029784163963 65.805 1.1514 59.629 59.11 60.261 -6.1757 267 66 5 0 0 0 0.009483 6 42983 42457;42579;42713;42851;42983;43121 81.89 27.117 1 1580299999.9999998 53117 2778 35824 36628 61703;61704;61705;61706;61707;61708 61707 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3037109375 2 513.303124 1024.5917 0.41986 0.00021552 0.35956 0.00018456 0.77942 0.00040008 513.3033936331462 66.712 0.82233 60.537 60.23 61.052 -6.1757 139 46 4 0 0 0 0.014417 4 43245 43245;43366;43495;43625 69.105 36.319 1 141170000 53118 2778 35824 36628 61709;61710;61711;61712 61709 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3033447265625 2 513.303124 1024.5917 0.5262 0.0002701 0.15688 8.0525E-05 0.68308 0.00035063 513.3032168609851 67.953 1.6912 61.777 61.052 62.743 -6.1757 294 97 4 0 0 0 0.009483 8 44431 43898;44028;44159;44304;44431;44567;44693;44826 81.89 33.544 1 536150000 53119 2778 35824 36628 61713;61714;61715;61716;61717;61718;61719;61720 61717 0.0803831599437217 RLPETLPSL 9 Unmodified _RLPETLPSL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.303124 1024.5917 -0.24197 -0.0001242 -0.8511 -0.00043687 -1.0931 -0.00056107 513.3026846955181 60.752 0.14308 60.263 60.148 60.291 -0.48932 -0.13675 -0.0010028 NaN 69.105 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2393500 53120 2778 35824 36628 0.0803831599437217 RLPFDLWTP 9 Unmodified _RLPFDLWTP_ 0 0 0 ENST00000427522.6_1_20:62190209-62190602:-|nuORF ENST00000427522.6_1_20:62190209-62190602:-|nuORF ENST00000427522.6_1_20:62190209-62190602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2101440429688 3 382.209836 1143.60768 -0.58566 -0.00022384 -0.25256 -9.6532E-05 -0.83822 -0.00032038 382.20977760123327 17.492 0.14062 17.492 17.406 17.547 0 27 21 2 0 0 0 0.61381 1 8621 8621 0.23584 0 1 480800 53121 13193 35825 36629 61721 61721 0.041620222312758415 RLPLKPHVKK 10 Unmodified _RLPLKPHVKK_ 0 0 0 ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF ENST00000561481.1_1_16:74496494-74496551:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.40625 2 608.40605 1214.79755 1.351 0.00082198 -1.5578 -0.00094778 -0.20677 -0.0001258 608.4053197490426 104.2 0.18511 98.029 97.947 98.132 -6.1757 21 14 2 0 0 0 0.72247 1 69775 69775 0.40072 0 1 5290100 53122 15325 35826 36630 61722 61722 0.19873933964299795 RLPLQRAV 8 Unmodified _RLPLQRAV_ 0 0 0 REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.8064880371094 2 476.806168 951.597784 NaN NaN NaN NaN NaN NaN NaN 28.262 1 28.291 27.791 28.791 0.029564 0 0 0 0.95607 1 14709 14709 9.3474 1.4373 1 + 53123 27341 35827 36631 61723 61723 0.12004879016558334 RLPLRLFLI 9 Unmodified _RLPLRLFLI_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.8850708007812 2 570.884419 1139.75428 1.57 0.0008963 -0.36605 -0.00020897 1.204 0.00068733 570.8841385513247 100.8 0.11409 94.621 94.556 94.67 -6.1757 23 7 4 0 0 0 0.0088975 1 67487 67487 104.8 44.41 1 272970000 53124 1685 35828 36632 61724 61724 0.1899974418702186 RLPLRLFLI 9 Unmodified _RLPLRLFLI_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.9259948730469 3 380.925371 1139.75428 1.9205 0.00073155 -0.30813 -0.00011737 1.6123 0.00061418 380.92524172997463 100.79 0.11409 94.617 94.556 94.67 -6.1757 17 7 3 0 0 0 0.042911 1 67496 67496 36.506 14.969 1 73907000 53125 1685 35828 36632 61725 61725 0.1899974418702186 RLPLRLFLII 10 Unmodified _RLPLRLFLII_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.4187622070312 2 627.426451 1252.83835 NaN NaN NaN NaN NaN NaN NaN 105.07 1 105.02 104.52 105.52 -0.048737 0 0 0 1.0061 1 58312 58312 0 0 1 53126 1685 35829 36633 61726 61726 0.22204275283934294 RLPNRIPSL 9 Unmodified _RLPNRIPSL_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MSMS AL20221201_MKP_PDAC_01 4 533.329833984375 2 533.330008 1064.64546 NaN NaN NaN NaN NaN NaN NaN 48.729 1 43.333 42.833 43.833 -5.3961 0 0 0 0.25233 1 30380 30380 27.629 14.121 1 53127 10911 35830 36634 61727 61727 0.11572533216735792 RLPNVLIV 8 Unmodified _RLPNVLIV_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2468566894531 2 462.30547 922.596387 0.12783 5.9097E-05 0.033646 1.5555E-05 0.16148 7.4652E-05 462.3054506953698 38.064 0.24783 38.081 37.922 38.17 0.01704 21 11 2 0 0 0 8.7369 1 20243 20243 18.135 3.5533 1 2211300 53128 8176 35831 36635 61728 61728 0.13199244927795917 RLPPTPLLL 9 Unmodified _RLPPTPLLL_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000464887.1_1_2:74755370-74756014:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3345642089844 2 510.334227 1018.6539 0.54415 0.0002777 0.89315 0.00045581 1.4373 0.0007335 510.33465588814835 74.415 1.2213 74.461 73.866 75.087 0.045959 153 55 3 0 0 0 0.05447 4 40928 40928;41025;41129;41314 43.858 16.975 1 8191900 53129 3109 35832 36636 61729;61730;61731;61732 61729 0.1453208713337517 RLPPTPLLL 9 Unmodified _RLPPTPLLL_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000464887.1_1_2:74755370-74756014:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3345947265625 2 510.334227 1018.6539 1.0993 0.00056099 -0.32256 -0.00016461 0.7767 0.00039638 510.33406138226593 96.41 0.65147 90.234 90.041 90.693 -6.1757 86 38 3 0 0 0 0.044011 2 63980 63980;64108 47.749 11.622 1 28330000 53130 3109 35832 36636 61733;61734 61733 0.1453208713337517 RLPPVTLQV 9 Unmodified _RLPPVTLQV_ 0 0 0 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8215637207031 2 511.821484 1021.62842 NaN NaN NaN NaN NaN NaN NaN 59.153 1 59.092 58.592 59.592 -0.060719 0 0 0 0.36957 1 32232 32232 21.537 2.28 1 53131 6631 35833 36637 61735 61735 0.11846612610941065 RLPPVTLQV 9 Unmodified _RLPPVTLQV_ 0 0 0 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8209838867188 2 511.821484 1021.62842 NaN NaN NaN NaN NaN NaN NaN 59.537 1 59.484 58.984 59.984 -0.053062 0 0 0 0.25233 1 32452 32452 27.629 8.3718 1 53132 6631 35833 36637 61736 61736 0.11846612610941065 RLPRQTWSI 9 Unmodified _RLPRQTWSI_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2;ENST00000374211.5_1_1:26648461-26651325:-|nuORF ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5591735839844 3 386.224368 1155.65128 1.1752 0.00045389 0.26385 0.0001019 1.439 0.00055579 386.5587901331405 45.766 0.31004 40.811 40.641 40.951 -4.9549 48 20 3 0 0 0 0.46162 1 28103 28103 9.544 4.4965 1 10688000 53133 8564 35834 36638 61737 61737 0.07967631728411106 RLPRSLHAF 9 Unmodified _RLPRSLHAF_ 0 0 0 ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2172546386719 3 366.217325 1095.63015 -0.13974 -5.1176E-05 0.48804 0.00017873 0.3483 0.00012755 366.21739066159853 30.367 0.28668 30.397 30.233 30.519 0.030106 27 12 3 0 0 0 0.20507 1 15849 15849 22.658 15.049 1 3224700 53134 4748 35835 36639 61738 61738 0.0861566641956415 RLPRTKHLLNV 11 Unmodified _RLPRTKHLLNV_ 0 0 0 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.9221801757812 2 673.922595 1345.83064 1.4264 0.00096127 -0.62195 -0.00041914 0.80443 0.00054212 674.423252158521 105.03 0.12679 98.854 98.773 98.9 -6.1757 18 10 2 0 0 0 0.73389 1 70301 70301 1.0715 0.10919 1 38273000 53135 2762 35836 36640 61739 61739 0.17155516016350703 RLPSARPSF 9 Unmodified _RLPSARPSF_ 0 0 0 ENST00000539294.5_1_8:64081202-64081433:+|nuORF ENST00000539294.5_1_8:64081202-64081433:+|nuORF ENST00000539294.5_1_8:64081202-64081433:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7933959960938 2 515.793258 1029.57196 0.042209 2.1771E-05 0.24587 0.00012682 0.28808 0.00014859 515.7932633685581 30.551 0.15109 30.581 30.498 30.649 0.030104 11 6 2 0 0 0 0.2324 1 15967 15967 20.415 6.5085 1 1058200 53136 15019 35837 36641 61740 61740 0.05835984774262215 RLPSSWALF 9 Unmodified _RLPSSWALF_ 0 0 0 ENSG00000129636|ENST00000320640|ITFG1 ENSG00000129636|ENST00000320640|ITFG1 ENSG00000129636|ENST00000320640|ITFG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7985229492188 2 538.798009 1075.58147 0.39826 0.00021458 0.607 0.00032705 1.0053 0.00054163 538.7983379401588 78.627 0.49361 78.68 78.466 78.959 0.052452 50 19 4 0 0 0 0.08907 2 43370 43370;43477 38.176 18.919 1 7597500 53137 4154 35838 36642 61741;61742 61741 0.04669753059783943 RLPSSWALF 9 Unmodified _RLPSSWALF_ 0 0 0 ENSG00000129636|ENST00000320640|ITFG1 ENSG00000129636|ENST00000320640|ITFG1 ENSG00000129636|ENST00000320640|ITFG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.79931640625 2 538.798009 1075.58147 1.1193 0.00060305 0.0041141 2.2167E-06 1.1234 0.00060527 538.7981318093505 97.995 0.34554 91.819 91.64 91.985 -6.1757 54 21 4 0 0 0 0.13639 1 64920 64920 31.268 6.5945 1 133970000 53138 4154 35838 36642 61743 61743 0.04669753059783943 RLPVSIPLF 9 Unmodified _RLPVSIPLF_ 0 0 0 nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.326416015625 2 521.326402 1040.63825 0.28866 0.00015049 0.38386 0.00020012 0.67252 0.0003506 521.3265664223154 89.608 0.48776 89.652 89.4 89.888 0.044136 46 17 4 0 0 0 0.044011 1 49883 49883 47.749 22.349 1 55016000 53139 4308 35839 36643 61744 61744 0.11955800616328816 RLPVSIPLF 9 Unmodified _RLPVSIPLF_ 0 0 0 nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 nc|ENSG00000131188|Q8TB68-2|PRR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.32666015625 2 521.326402 1040.63825 0.44095 0.00022988 0.32589 0.00016989 0.76684 0.00039978 521.3265495707946 99.726 0.17809 93.55 93.474 93.652 -6.1757 37 11 4 0 0 0 0.08691 1 66514 66514 36.127 20.28 1 846850000 53140 4308 35839 36643 61745 61745 0.11955800616328816 RLPWLNRSQ 9 Unmodified _RLPWLNRSQ_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8779296875 3 390.556118 1168.64652 NaN NaN NaN NaN NaN NaN NaN 50.533 1 50.479 49.979 50.979 -0.053871 0 0 0 0.85261 1 27327 27327 1.1933 0 1 53141 1414 35840 36644 61746 61746 0.06894747585670302 RLQAEIEGL 9 Unmodified _RLQAEIEGL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7901000976562 2 514.790381 1027.56621 -0.45757 -0.00023555 0.52451 0.00027001 0.066936 3.4458E-05 514.7906472502228 48.55 0.39122 48.55 48.394 48.786 0 30 18 2 0 0 0 0.07087 1 26678 26678 39.95 0 1 4006700 + 53142 165 35841 36645 61747 61747 0.05352841471949432 RLQAQRNEL 9 Unmodified _RLQAQRNEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61906826-61907063:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1983337402344 3 376.547511 1126.6207 -0.5303 -0.00019968 0.095337 3.5899E-05 -0.43496 -0.00016378 376.547540351434 18.562 0.12956 18.562 18.495 18.625 0 23 11 3 0 0 0 0.20572 1 9257 9257 10.151 5.6217 1 1487900 53143 1458 35842 36646 61748 61748 0.06245853343352792 RLQAQRNEL 9 Unmodified _RLQAQRNEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61906826-61907063:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5478820800781 3 376.547511 1126.6207 1.624 0.00061153 0.20331 7.6556E-05 1.8273 0.00068808 376.5475667912774 19.969 0.41287 17.313 17.058 17.471 -2.6564 37 23 2 0 0 0 0.0059585 1 10586 10586 93.938 34.886 1 12198000 53144 1458 35842 36646 61749 61749 0.06245853343352792 RLQDAIAKV 9 Unmodified _RLQDAIAKV_ 0 0 0 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.30908203125 2 507.308741 1012.60293 0.34517 0.00017511 -0.47289 -0.0002399 -0.12773 -6.4797E-05 507.3086459157318 38.49 0.40099 34.121 33.932 34.333 -4.3689 43 25 3 0 0 0 0.01958 1 22688 22688 63.961 24.011 1 22343000 53145 1737 35843 36647 61750 61750 0.09713138088511641 RLQDEIQRL 9 Unmodified _RLQDEIQRL_ 0 0 0 ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.8917846679688 3 390.891166 1169.65167 -0.13482 -5.27E-05 0.31346 0.00012253 0.17864 6.9827E-05 390.8913231837373 40.301 0.25974 40.301 40.131 40.391 0 25 12 3 0 0 0 0.012586 1 21613 21613 73.196 21.708 1 5204600 53146 5501 35844 36648 61751 61751 0.07363006657601545 RLQDEIQRL 9 Unmodified _RLQDEIQRL_ 0 0 0 ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN ENSG00000143375|ENST00000271636|CGN MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2254333496094 3 390.891166 1169.65167 0.86538 0.00033827 0.51012 0.0001994 1.3755 0.00053767 390.89141381021295 45.53 0.24478 40.575 40.437 40.682 -4.9549 25 16 2 0 0 0 0.01861 1 27950 27950 64.927 18.904 1 15423000 53147 5501 35844 36648 61752 61752 0.07363006657601545 RLQDELVTL 9 Unmodified _RLQDELVTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000484393.1_1_1:39751227-39753267:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.8113403320312 2 543.811313 1085.60807 0.36881 0.00020056 0.011798 6.4161E-06 0.38061 0.00020698 543.811263766412 58.073 0.2888 58.073 57.944 58.233 0 28 11 3 0 0 0 0.014417 1 32320 32320 69.105 19.172 1 6608400 53148 4022 35845 36649 61753 61753 0.06869397160471635 RLQDLLLHY 9 Unmodified _RLQDLLLHY_ 0 0 0 nc|ENSG00000027869|Q9NP31-3|SH2D2A;nc|ENSG00000027869|Q9NP31-4|SH2D2A;ENSG00000027869|ENST00000368199|SH2D2A;nc|ENSG00000027869|Q9NP31-2|SH2D2A nc|ENSG00000027869|Q9NP31-3|SH2D2A nc|ENSG00000027869|Q9NP31-3|SH2D2A MSMS AL20221201_MKP_PDAC_01 4 585.8334350585938 2 585.835123 1169.65569 NaN NaN NaN NaN NaN NaN NaN 45.51 1 40.555 40.055 41.055 -4.9549 0 0 0 0.14 1 27951 27951 37.974 8.8924 1 53149 568 35846 36650 61754 61754 0.07765096151319995 RLQEAKLQI 9 Unmodified _RLQEAKLQI_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8932495117188 3 366.892507 1097.65569 1.7418 0.00063904 -0.18537 -6.8011E-05 1.5564 0.00057103 366.89288593990983 19.931 0.22329 17.275 17.163 17.387 -2.6564 19 12 2 0 0 0 0.55373 1 10605 10605 4.1895 0 1 1231900 53150 9547 35847 36651 61755 61755 0.1107709615132535 RLQEDLHIL 9 Unmodified _RLQEDLHIL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8252563476562 2 568.824755 1135.63496 0.74786 0.0004254 0.12511 7.1168E-05 0.87298 0.00049657 568.8249175448852 49.7 0.2759 49.7 49.536 49.812 0 30 12 3 0 0 0 0.023481 1 27344 27344 60.074 6.6699 1 15262000 53151 3760 35848 36652 61756 61756 0.07256505771670163 RLQEDLHIL 9 Unmodified _RLQEDLHIL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.7253723144531 3 379.552262 1135.63496 0.46703 0.00017726 -0.20615 -7.8246E-05 0.26088 9.9017E-05 379.55212564351507 49.676 0.32374 49.676 49.536 49.859 0 24 14 2 0 0 0 0.16954 1 27362 27362 19.362 14.065 1 4282300 53152 3760 35848 36652 61757 61757 0.07256505771670163 RLQEDPPAGV 10 Unmodified _RLQEDPPAGV_ 0 0 0 ENSG00000077721|ENST00000371558|UBE2A;nc|ENSG00000077721|P49459-2|UBE2A ENSG00000077721|ENST00000371558|UBE2A ENSG00000077721|ENST00000371558|UBE2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2860717773438 2 541.285463 1080.55637 -0.16464 -8.9117E-05 0.83523 0.0004521 0.67059 0.00036298 541.2858316421996 29.323 0.34829 29.323 29.122 29.47 0 49 16 4 0 0 0 0.038363 2 15229 15126;15229 63.961 31.175 1 16453000 53153 1226 35849 36653 61758;61759 61759 0.01931653466544958 RLQEDPPVGV 10 Unmodified _RLQEDPPVGV_ 0 0 0 ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF ENSG00000119048|ENST00000265339|UBE2B ENSG00000119048|ENST00000265339|UBE2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2979736328125 2 555.301113 1108.58767 0.97753 0.00054282 -3.0834 -0.0017122 -2.1059 -0.0011694 555.299197512538 36.598 0.41106 36.598 36.467 36.878 0 62 19 5 0 0 0 0.13297 1 19437 19437 41.956 17.935 1 96334000 53154 3412 35850 36654 61760 61760 0.037722265006550515 RLQEDPPVGV 10 Unmodified _RLQEDPPVGV_ 0 0 0 ENSG00000119048|ENST00000265339|UBE2B;ENST00000511807.1_1_5:133707262-133710155:+|nuORF ENSG00000119048|ENST00000265339|UBE2B ENSG00000119048|ENST00000265339|UBE2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3013305664062 2 555.301113 1108.58767 0.75549 0.00041952 -0.50589 -0.00028092 0.2496 0.0001386 555.3008158462513 42.17 0.50903 37.485 37.2 37.709 -4.6846 102 31 4 0 0 0 0.13297 2 25484 25345;25484 41.956 18.166 1 235300000 53155 3412 35850 36654 61761;61762 61762 0.037722265006550515 RLQEELEKL 9 Unmodified _RLQEELEKL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.332763671875 2 579.32987 1156.64519 0.20687 0.00011984 0.34901 0.00020219 0.55588 0.00032204 579.3300339005468 40.019 0.23895 40.019 39.892 40.131 0 32 11 4 0 0 0 0.0093064 1 21461 21461 83.429 6.604 1 14806000 53156 3894 35851 36655 61763 61763 0.07313068706230297 RLQEELEKL 9 Unmodified _RLQEELEKL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.5560607910156 3 386.555672 1156.64519 -0.014351 -5.5475E-06 0.65588 0.00025353 0.64153 0.00024799 386.55583669502346 40.019 0.19684 40.019 39.892 40.089 0 17 9 2 0 0 0 0.021948 1 21471 21471 49.742 11.971 1 6223400 53157 3894 35851 36655 61764 61764 0.07313068706230297 RLQEELEKL 9 Unmodified _RLQEELEKL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.331298828125 2 579.32987 1156.64519 0.44669 0.00025878 1.2381 0.00071729 1.6848 0.00097607 579.3305713615212 45.187 0.28619 40.335 40.115 40.401 -4.852 32 18 2 0 0 0 0.01085 1 27629 27629 78.06 6.3526 1 17760000 53158 3894 35851 36655 61765 61765 0.07313068706230297 RLQEELEKL 9 Unmodified _RLQEELEKL_ 0 0 0 nc|ENSG00000125844|Q9P2E9-3|RRBP1;ENSG00000125844|ENST00000377813|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 nc|ENSG00000125844|Q9P2E9-3|RRBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.2403564453125 3 386.555672 1156.64519 0.8381 0.00032397 1.3912 0.00053778 2.2293 0.00086176 386.89007824414745 45.187 0.31871 40.335 40.083 40.401 -4.852 28 20 2 0 0 0 0.20067 1 27636 27636 12.873 1.3779 1 15610000 53159 3894 35851 36655 61766 61766 0.07313068706230297 RLQEELRKV 9 Unmodified _RLQEELRKV_ 0 0 0 nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF nc|ENSG00000167767|Q6KB66-2|KRT80 nc|ENSG00000167767|Q6KB66-2|KRT80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.9035339355469 3 390.903295 1169.68806 -0.39467 -0.00015428 0.7157 0.00027977 0.32103 0.00012549 390.9036036595695 22.139 0.15357 22.139 22.05 22.204 0 13 7 2 0 0 0 0.47359 1 11271 11271 8.9762 5.3892 1 746860 + 53160 183 35852 36656 61767 61767 0.10999883554313783 RLQEELRKV 9 Unmodified _RLQEELRKV_ 0 0 0 nc|ENSG00000167767|Q6KB66-2|KRT80;ENSG00000167767|ENST00000394815|KRT80;CON__Q6KB66-1;CON__Q0VBK2;nc|ENSG00000167767|Q6KB66-3|KRT80;ENST00000466011.1_1_12:52565184-52579482:-|nuORF nc|ENSG00000167767|Q6KB66-2|KRT80 nc|ENSG00000167767|Q6KB66-2|KRT80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.9031372070312 3 390.903295 1169.68806 0.26787 0.00010471 0.37644 0.00014715 0.64431 0.00025186 390.90342791498193 25.257 0.32112 22.374 22.228 22.549 -2.8831 48 23 3 0 0 0 0.36306 1 13781 13781 14.218 4.6742 1 11793000 + 53161 183 35852 36656 61768 61768 0.10999883554313783 RLQEGDKILSV 11 Unmodified _RLQEGDKILSV_ 0 0 0 ENSG00000213463|ENST00000256366|SYNJ2BP ENSG00000213463|ENST00000256366|SYNJ2BP ENSG00000213463|ENST00000256366|SYNJ2BP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.7745666503906 3 419.910227 1256.70885 0.0925 3.8842E-05 -1.1834 -0.00049693 -1.0909 -0.00045809 419.90987630199686 39.455 0.2092 39.455 39.321 39.53 0 14 9 2 0 0 0 0.29597 1 21165 21165 11.631 9.5474 1 2531200 53162 10437 35853 36657 61769 61769 0.09076429143328824 RLQESLKKV 9 Unmodified _RLQESLKKV_ 0 0 0 nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-3|PDXDC1 nc|ENSG00000179889|Q6P996-2|PDXDC1 nc|ENSG00000179889|Q6P996-2|PDXDC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.5389404296875 3 367.564391 1099.67134 1.7394 0.00063934 0.01313 4.8262E-06 1.7525 0.00064416 367.5644094915947 20.033 0.26531 17.376 17.205 17.471 -2.6564 30 14 3 0 0 0 0.17646 1 10604 10604 24.957 15.413 1 3096000 53163 8863 35854 36658 61770 61770 0.1254938266836234 RLQESVMEA 9 Oxidation (M) _RLQESVM(Oxidation (M))EA_ RLQESVM(1)EA RLQESVM(56)EA 0 0 1 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7635498046875 2 539.763506 1077.51246 0.0018957 1.0232E-06 0.083526 4.5084E-05 0.085422 4.6107E-05 539.7636624152118 23.219 0.33842 20.44 20.305 20.644 -2.7784 63 31 3 0 0 0 0.029718 1 12508 12508 55.503 19.376 1 13754000 53164 7241 35855 36659 61771 61771 1253 -0.02319699022086752 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7671508789062 2 531.766049 1061.51754 0.8351 0.00044408 0.40567 0.00021572 1.2408 0.0006598 531.7663258250763 34.65 0.35092 30.555 30.401 30.752 -4.0951 38 20 2 0 0 0 0.062454 1 19997 19997 41.956 12.874 1 21750000 53165 7241 35855 36660 61772 61772 -0.010753951594551836 RLQESVMEA 9 Unmodified _RLQESVMEA_ 0 0 0 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 ENSG00000164754|ENST00000297338|RAD21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 531.766049 1061.51754 -0.49422 -0.00026281 4.4737 0.002379 3.9795 0.0021162 531.7659462026385 30.205 0.12434 30.205 30.139 30.263 0 -0.17525 0.0042262 NaN 41.956 10 5 3 NaN NaN NaN NaN 0 NaN NaN 0 778030 53166 7241 35855 36660 -0.010753951594551836 RLQGELQAV 9 Unmodified _RLQGELQAV_ 0 0 0 ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3 ENST00000566056.1_1_16:30959736-30965162:+|nuORF ENST00000566056.1_1_16:30959736-30965162:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2503356933594 2 507.290548 1012.56654 -0.092024 -4.6683E-05 -3.4834 -0.0017671 -3.5754 -0.0018138 507.28828841501553 35.204 0.23442 35.204 35.072 35.306 0 24 11 3 0 0 0 0.19758 1 18632 18632 13.042 2.9685 1 5111900 53167 8552 35856 36661 61773 61773 0.060762611917994036 RLQGELQAV 9 Unmodified _RLQGELQAV_ 0 0 0 ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3 ENST00000566056.1_1_16:30959736-30965162:+|nuORF ENST00000566056.1_1_16:30959736-30965162:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.2920532226562 2 507.290548 1012.56654 NaN NaN NaN NaN NaN NaN NaN 40.07 1 35.54 35.04 36.04 -4.5294 0 0 0 0.13831 1 23881 23881 38.176 10.547 1 53168 8552 35856 36661 61774 61774 0.060762611917994036 RLQKKVEQL 9 Unmodified _RLQKKVEQL_ 0 0 0 ENSG00000172216|ENST00000303004|CEBPB;nc|ENSG00000172216|P17676-2|CEBPB;nc|ENSG00000172216|P17676-3|CEBPB ENSG00000172216|ENST00000303004|CEBPB ENSG00000172216|ENST00000303004|CEBPB MSMS AL20221201_MKP_PDAC_01 4 381.2401123046875 3 381.239907 1140.69789 NaN NaN NaN NaN NaN NaN NaN 17.662 1 15.075 14.575 15.575 -2.5866 0 0 0 0.41144 1 9256 9256 19.362 10.617 1 53169 8193 35857 36662 61775 61775 0.13317071559686156 RLQKLETL 8 Unmodified _RLQKLETL_ 0 0 0 nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5;nc|ENSG00000107897|Q5T8D3-4|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.8118591308594 2 500.811116 999.60768 0.11811 5.9152E-05 0.99802 0.00049982 1.1161 0.00055897 501.3129487787252 20.476 0.14623 20.487 20.388 20.535 0.010553 12 7 2 0 0 0 0.79783 1 10439 10439 7.9102 0 1 506350 53170 2529 35858 36663 61776 61776 0.10786022231286552 RLQKWFYER 9 Unmodified _RLQKWFYER_ 0 0 0 ENSG00000075240|ENST00000406902|GRAMD4 ENSG00000075240|ENST00000406902|GRAMD4 ENSG00000075240|ENST00000406902|GRAMD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.3572998046875 2 663.359296 1324.70404 NaN NaN NaN NaN NaN NaN NaN 88.3 1 88.3 87.8 88.8 0 0 0 0 0.85798 1 48878 48878 0.52476 0.066424 1 53171 1148 35859 36664 61777 61777 0.0546758979119204 RLQLLGFLK 9 Unmodified _RLQLLGFLK_ 0 0 0 ENSG00000155367|ENST00000309276|PPM1J;nc|ENSG00000155367|Q5JR12-2|PPM1J ENSG00000155367|ENST00000309276|PPM1J ENSG00000155367|ENST00000309276|PPM1J MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.1994018554688 3 363.237726 1086.69135 -0.12286 -4.4628E-05 1.8744 0.00068085 1.7515 0.00063622 363.5724236440415 32.867 0.23827 32.897 32.803 33.041 0.029743 20 10 3 0 0 0 0.21835 1 17290 17290 2.2828 0 1 2422200 53172 6384 35860 36665 61778 61778 0.15147178398979122 RLQPYKKKRKR 11 Unmodified _RLQPYKKKRKR_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 750.9841918945312 2 750.983518 1499.95248 1.5668 0.0011766 -0.36617 -0.00027498 1.2006 0.00090164 750.9830985265561 104.94 0.16126 98.765 98.68 98.841 -6.1757 29 11 4 0 0 0 0.7453 1 70234 70234 0 0 1 135410000 + 53173 19045 35861 36666 61779 61779 0.22250558098676265 RLQPYKKKRKR 11 Unmodified _RLQPYKKKRKR_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.9917297363281 3 500.991438 1499.95248 1.6945 0.00084891 -0.33973 -0.0001702 1.3547 0.00067871 500.99124928885607 104.94 0.16214 98.765 98.693 98.856 -6.1757 27 11 3 0 0 0 0.7453 1 70243 70243 0 0 1 96145000 + 53174 19045 35861 36666 61780 61780 0.22250558098676265 RLQPYREI 8 Unmodified _RLQPYREI_ 0 0 0 nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.806640625 2 537.806365 1073.59818 -0.21156 -0.00011378 0.29626 0.00015933 0.0847 4.5552E-05 537.8063875063003 37.547 0.24305 37.275 37.157 37.4 -0.27133 19 9 3 0 0 0 0.70294 1 19719 19719 16.942 0 1 2379700 53175 2080 35862 36667 61781 61781 0.0643225394574074 RLQQENHEL 9 Unmodified _RLQQENHEL_ 0 0 0 ENST00000576826.1_1_16:3080666-3085497:-|nuORF;ENSG00000162069|ENST00000572449|BICDL2;ENST00000572240.5_1_16:3080380-3081406:-|nuORF ENST00000576826.1_1_16:3080666-3085497:-|nuORF ENST00000576826.1_1_16:3080666-3085497:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 583.8005981445312 2 583.799269 1165.58398 NaN NaN NaN NaN NaN NaN NaN 18.518 1 15.896 15.396 16.396 -2.6215 0 0 0 0.63508 1 9759 9759 11.495 1.4208 1 53176 6833 35863 36668 61782 61782 0.007815567268153245 RLQQMYNV 8 Unmodified _RLQQMYNV_ 0 0 0 REV__nc|ENSG00000074047|P10070-2|GLI2 REV__nc|ENSG00000074047|P10070-2|GLI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.27001953125 2 526.271301 1050.52805 NaN NaN NaN NaN NaN NaN NaN 73.976 1 73.976 73.476 74.476 0 0 0 0 0.97444 1 41174 41174 0.69038 0 1 + 53177 17545 35864 36669 61783 61783 0.004806322856211409 RLQRFERH 8 Unmodified _RLQRFERH_ 0 0 0 ENST00000466521.5_1_16:30127991-30128572:-|nuORF ENST00000466521.5_1_16:30127991-30128572:-|nuORF ENST00000466521.5_1_16:30127991-30128572:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.2170715332031 3 381.216096 1140.62646 NaN NaN NaN NaN NaN NaN NaN 57.827 1 57.827 57.327 58.327 0 0 0 0 0.97444 1 32186 32186 1.6526 0 1 53178 13758 35865 36670 61784 61784 0.06176996645717736 RLRAVPAA 8 Unmodified _RLRAVPAA_ 0 0 0 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2704467773438 2 427.271961 852.52937 0.93491 0.00039946 -1.2267 -0.00052414 -0.29179 -0.00012467 427.27121400479336 101.63 0.23264 95.457 95.291 95.524 -6.1757 18 11 2 0 0 0 0.80975 1 68224 68224 0.79363 0 1 8270500 53179 8802 35866 36671 61785 61785 0.09720634436689579 RLREAIAEL 9 Unmodified _RLREAIAEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.548583984375 3 357.548741 1069.62439 0.065031 2.3252E-05 0.848 0.0003032 0.91303 0.00032645 357.54905340637487 37.895 0.26288 37.895 37.786 38.049 0 22 12 2 0 0 0 0.18255 1 20206 20206 24.882 4.3006 1 6398100 53180 16412 35867 36672 61786 61786 0.09236523117237994 RLREEIEEL 9 Unmodified _RLREEIEEL_ 0 0 0 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1;ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP nc|ENSG00000138768|O60763-2|USO1;ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.8261108398438 2 593.824952 1185.63535 NaN NaN NaN NaN NaN NaN NaN 36.781 1 36.781 36.281 37.281 0 0 0 0 0.12343 1 19529 19529 39.95 1.7741 1 53181 8538;16226 35868 36673 61787 61787 0.04995880700857924 RLREFWQQM 9 Unmodified _RLREFWQQM_ 0 0 0 ENST00000597186.5_1_19:58640446-58640650:-|nuORF ENST00000597186.5_1_19:58640446-58640650:-|nuORF ENST00000597186.5_1_19:58640446-58640650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.8925170898438 3 431.88888 1292.64481 0.27456 0.00011858 2.6217 0.0011323 2.8963 0.0012509 432.2226933298408 21.683 0.80005 21.697 21.589 22.389 0.013796 67 43 2 0 0 0 0.61381 1 11134 11134 0.23584 0 1 990000 53182 15774 35869 36674 61788 61788 0.010193705053779922 RLRGRWWEMR 10 Unmodified _RLRGRWWEMR_ 0 0 0 REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF REV__ENST00000464470.1_1_13:32999202-32999613:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.5964050292969 3 482.59469 1444.76224 NaN NaN NaN NaN NaN NaN NaN 18.162 1 18.168 17.668 18.668 0.0060463 0 0 0 1.0047 1 9192 9192 0.15932 0.064481 1 + 53183 27377 35870 36675 61789 61789 0.05764948164824091 RLRHRHGKLLR 11 Unmodified _RLRHRHGKLLR_ 0 0 0 ENST00000569380.5_1_16:1827100-1828231:-|nuORF ENST00000569380.5_1_16:1827100-1828231:-|nuORF ENST00000569380.5_1_16:1827100-1828231:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 721.4495849609375 2 721.458002 1440.90145 NaN NaN NaN NaN NaN NaN NaN 91.058 1 90.563 90.063 91.063 -0.49457 0 0 0 0.9435 1 49778 49778 0 0 1 53184 15456 35871 36676 61790 61790 0.19863653844527107 RLRKLLSHQKR 11 Unmodified _RLRKLLSHQKR_ 0 0 0 REV__ENSG00000115268|ENST00000592588|RPS15 REV__ENSG00000115268|ENST00000592588|RPS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4832763671875 4 359.48366 1433.90553 0.045587 1.6388E-05 -1.1842 -0.00042571 -1.1387 -0.00040933 359.4831509954128 37.883 0.46467 37.883 37.604 38.069 0 58 22 3 0 0 0 0.74429 1 20220 20220 0.094841 0 1 3281100 + 53185 18966 35872 36677 61791 61791 0.20593698547577333 RLRNHMAVA 9 Unmodified _RLRNHMAVA_ 0 0 0 ENSG00000164919|ENST00000520468|COX6C ENSG00000164919|ENST00000520468|COX6C ENSG00000164919|ENST00000520468|COX6C MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5348510742188 3 356.534549 1066.58182 0.85661 0.00030541 -0.72504 -0.0002585 0.13157 4.6907E-05 356.53440946795126 16.543 0.24963 13.987 13.839 14.089 -2.557 97 35 4 0 0 0 0.2324 1 8551 8551 20.415 8.9198 1 15422000 53186 7263 35873 36678 61792 61792 0.05118849508016865 RLRNTLYH 8 Unmodified _RLRNTLYH_ 0 0 0 REV__ENST00000591247.5_1_17:42113248-42113383:-|nuORF REV__ENST00000591247.5_1_17:42113248-42113383:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2041015625 3 358.205197 1071.59376 NaN NaN NaN NaN NaN NaN NaN 33.462 1 33.491 32.991 33.991 0.028934 0 0 0 0.97444 1 17605 17605 1.8442 0.19162 1 + 53187 29158 35874 36679 61793 61793 0.06082789522838539 RLRPPIMIM 9 Unmodified _RLRPPIMIM_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1;ENST00000419457.1_1_13:29296686-29297403:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 MSMS AL20221201_MKP_PDAC_01 4 563.8343505859375 2 563.833014 1125.65148 NaN NaN NaN NaN NaN NaN NaN 94.568 1 88.393 87.893 88.893 -6.1757 0 0 0 0.13831 1 62636 62636 42.095 9.7891 1 53188 259;13088 35875 36680 61794 61794 0.09367592132389291 RLRQWQQT 8 Unmodified _RLRQWQQT_ 0 0 0 REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3 REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3085327148438 2 558.307064 1114.59957 0.19406 0.00010835 0.85549 0.00047763 1.0496 0.00058597 558.3079475094785 38.77 0.20985 38.483 38.398 38.608 -0.28687 23 9 3 0 0 0 0.57045 1 20422 20422 28.487 3.0875 1 5204600 + 53189 21743 35876 36681 61795 61795 0.04685888034509844 RLRQWRWRPFL 11 Unmodified _RLRQWRWRPFL_ 0 0 0 ENST00000341285.7_2_4:15656858-15657005:-|nuORF ENST00000341285.7_2_4:15656858-15657005:-|nuORF ENST00000341285.7_2_4:15656858-15657005:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4680786132812 2 807.468035 1612.92152 NaN NaN NaN NaN NaN NaN NaN 88.257 1 88.31 87.81 88.81 0.053352 0 0 0 0.9435 1 49096 49096 0 0 1 53190 11966 35877 36682 61796 61796 0.13957404784468963 RLRRENQVL 9 Unmodified _RLRRENQVL_ 0 0 0 nc|ENSG00000130303|Q10589-2|BST2;ENSG00000130303|ENST00000252593|BST2 nc|ENSG00000130303|Q10589-2|BST2 nc|ENSG00000130303|Q10589-2|BST2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2388000488281 3 395.238789 1182.69454 0.96956 0.00038321 0.39122 0.00015462 1.3608 0.00053783 395.23914696429114 18.68 0.2437 16.059 15.914 16.158 -2.6215 55 23 3 0 0 0 0.55373 1 9907 9907 4.1895 0.31317 1 7193600 53191 4199 35878 36683 61797 61797 0.11049821505707769 RLRRHKPKG 9 Unmodified _RLRRHKPKG_ 0 0 0 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 MSMS AL20221201_MKP_PDAC_01 4 574.36962890625 2 574.36779 1146.72103 NaN NaN NaN NaN NaN NaN NaN 106.85 1 100.67 100.17 101.17 -6.1757 0 0 0 0.8622 1 71503 71503 0 0 1 + 53192 24593 35879 36684 61798 61798 0.15353555187675738 RLRRLRLLRRR 11 Unmodified _RLRRLRLLRRR_ 0 0 0 ENST00000235332.5_1_1:12079550-12081702:+|nuORF;ENST00000478749.5_1_1:12079550-12082221:+|nuORF ENST00000235332.5_1_1:12079550-12081702:+|nuORF ENST00000235332.5_1_1:12079550-12081702:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 782.5344848632812 2 782.534575 1563.0546 NaN NaN NaN NaN NaN NaN NaN 108.48 1 108.44 107.94 108.94 -0.047607 0 0 0 0.9435 1 60079 60079 0 0 1 53193 11083 35880 36685 61799 61799 0.29559268960974805 RLRRPQRSGGL 11 Unmodified _RLRRPQRSGGL_ 0 0 0 REV__ENST00000366645.1_1_1:231473524-231473569:-|nuORF REV__ENST00000366645.1_1_1:231473524-231473569:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3936157226562 2 648.391993 1294.76943 0.78792 0.00051088 1.2086 0.00078367 1.9966 0.0012946 648.3926060479894 101.47 0.11967 95.292 95.231 95.351 -6.1757 13 5 3 0 0 0 0.69155 1 68095 68095 10.074 2.465 1 22407000 + 53194 25962 35881 36686 61800 61800 0.13384004036925035 RLRRRQRLRRL 11 Unmodified _RLRRRQRLRRL_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS AL20221201_MKP_PDAC_01 4 527.0186767578125 3 527.01698 1578.02911 NaN NaN NaN NaN NaN NaN NaN 108.96 1 102.79 102.29 103.29 -6.1757 0 0 0 0.9435 1 72794 72794 0 0 1 + 53195 22533 35882 36687 61801 61801 0.26321794438558754 RLRRRQRLRRL 11 Unmodified _RLRRRQRLRRL_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS AL20221201_MKP_PDAC_01 4 527.0187377929688 3 527.01698 1578.02911 NaN NaN NaN NaN NaN NaN NaN 109.69 1 103.51 103.01 104.01 -6.1757 0 0 0 0.9435 1 73240 73240 0 0 1 + 53196 22533 35882 36687 61802 61802 0.26321794438558754 RLRRRQRLRRL 11 Unmodified _RLRRRQRLRRL_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS AL20221201_MKP_PDAC_01 4 527.0197143554688 3 527.01698 1578.02911 NaN NaN NaN NaN NaN NaN NaN 109.86 1 103.68 103.18 104.18 -6.1757 0 0 0 0.9435 1 73344 73344 0 0 1 + 53197 22533 35882 36687 61803 61803 0.26321794438558754 RLRRRRRPRRQ 11 Unmodified _RLRRRRRPRRQ_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 803.5138549804688 2 803.514706 1605.01486 NaN NaN NaN NaN NaN NaN NaN 21.904 1 19.17 18.67 19.67 -2.7348 0 0 0 0.9435 1 11760 11760 0 0 1 53198 11488 35883 36688 61804 61804 0.2365514201028418 RLRRRRRPRRQ 11 Unmodified _RLRRRRRPRRQ_ 0 0 0 ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 803.5106811523438 2 803.514706 1605.01486 NaN NaN NaN NaN NaN NaN NaN 104.4 1 98.222 97.722 98.722 -6.1757 0 0 0 0.9435 1 69919 69919 0 0 1 53199 11488 35883 36688 61805 61805 0.2365514201028418 RLRRVGIFL 9 Unmodified _RLRRVGIFL_ 0 0 0 ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B MSMS AL20221201_MKP_PDAC_01 4 565.3695068359375 2 565.369467 1128.72438 NaN NaN NaN NaN NaN NaN NaN 106.55 1 100.37 99.871 100.87 -6.1757 0 0 0 0.85737 1 71315 71315 0.6015 0 1 53200 10756 35884 36689 61806 61806 0.16516805241690236 RLRRVGIFL 9 Unmodified _RLRRVGIFL_ 0 0 0 ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B ENSG00000251258|ENST00000441065|RFPL4B MSMS AL20221201_MKP_PDAC_01 4 565.3692016601562 2 565.369467 1128.72438 NaN NaN NaN NaN NaN NaN NaN 106.91 1 100.73 100.23 101.23 -6.1757 0 0 0 0.85737 1 71539 71539 0.6015 0 1 53201 10756 35884 36689 61807 61807 0.16516805241690236 RLRRWKLWQWW 11 Unmodified _RLRRWKLWQWW_ 0 0 0 REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 857.0106201171875 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 28.508 1 28.538 28.038 29.038 0.029564 0 0 0 0.9435 1 14845 14845 0 0 1 + 53202 28710 35885 36690 61808 61808 0.12485977818573701 RLRRWKLWQWW 11 Unmodified _RLRRWKLWQWW_ 0 0 0 REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 857.4847412109375 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 37.611 1 37.628 37.128 38.128 0.01704 0 0 0 0.9435 1 19972 19972 0 0 1 + 53203 28710 35885 36690 61809 61809 0.12485977818573701 RLRRWKLWQWW 11 Unmodified _RLRRWKLWQWW_ 0 0 0 REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF REV__ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 857.486083984375 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 27.686 1 24.65 24.15 25.15 -3.0365 0 0 0 0.9435 1 15363 15363 0 0 1 + 53204 28710 35885 36690 61810 61810 0.12485977818573701 RLRSEWEDF 9 Unmodified _RLRSEWEDF_ 0 0 0 REV__nc|ENSG00000162688|P35573-2|AGL REV__nc|ENSG00000162688|P35573-2|AGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2028198242188 3 413.203522 1236.58874 -0.39431 -0.00016293 0.44323 0.00018314 0.048915 2.0212E-05 413.20376388116046 23.53 0.385 23.53 23.367 23.752 0 65 19 4 0 0 0 0.55775 1 11952 11952 4.5289 0.65253 1 7416100 + 53205 21678 35886 36691 61811 61811 -0.020095591304425398 RLRWDHFNLTY 11 Unmodified _RLRWDHFNLTY_ 0 0 0 nc|ENSG00000189409|O75900-3|MMP23B;ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 760.8909301757812 2 760.891492 1519.76843 0.40295 0.0003066 -0.23858 -0.00018153 0.16437 0.00012507 760.891334395236 55.944 0.52434 50.023 49.782 50.306 -5.9211 105 30 4 0 0 0 0.56638 3 35549 35549;35676;35805 13.042 8.1455 1 146510000 53206 16474 35887 36692 61812;61813;61814 61812 0.029337448773731012 RLRWDHFNLTY 11 Unmodified _RLRWDHFNLTY_ 0 0 0 nc|ENSG00000189409|O75900-3|MMP23B;ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 760.891492 1519.76843 0.39942 0.00030391 -0.2633 -0.00020034 0.13612 0.00010357 761.3928982462348 49.64 0.1351 49.64 49.536 49.671 0 -0.17461 -7.7374E-05 NaN 13.042 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1338800 53207 16474 35887 36692 0.029337448773731012 RLRWDHFNLTY 11 Unmodified _RLRWDHFNLTY_ 0 0 0 nc|ENSG00000189409|O75900-3|MMP23B;ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 760.891492 1519.76843 0.57841 0.00044011 -0.19662 -0.00014961 0.38179 0.0002905 760.891392833994 50.184 0.28379 49.791 49.607 49.891 -0.3923 -0.022852 2.4101E-05 NaN 13.042 51 13 5 NaN NaN NaN NaN 0 NaN NaN 0 25113000 53208 16474 35887 36692 0.029337448773731012 RLRWDHFNLTY 11 Unmodified _RLRWDHFNLTY_ 0 0 0 nc|ENSG00000189409|O75900-3|MMP23B;ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B nc|ENSG00000189409|O75900-3|MMP23B nc|ENSG00000189409|O75900-3|MMP23B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 760.891492 1519.76843 1.284 0.00097698 -0.13016 -9.9036E-05 1.1538 0.00087795 760.8909647234116 49.851 0.20258 49.802 49.683 49.886 -0.048824 -0.011703 0.00012524 NaN 13.042 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2792700 53209 16474 35887 36692 0.029337448773731012 RLSAGRVP 8 Unmodified _RLSAGRVP_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2619934082031 2 428.261594 854.508634 0.6671 0.00028569 -0.046468 -1.99E-05 0.62063 0.00026579 428.26154054212327 90.544 0.3922 90.586 90.331 90.723 0.042175 22 13 2 0 0 0 0.80763 1 50355 50355 2.0598 0 1 5641300 53210 1581 35888 36693 61815 61815 0.07556044057025701 RLSDAQIYV 9 Unmodified _RLSDAQIYV_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7905883789062 2 532.790381 1063.56621 -0.053041 -2.826E-05 0.40722 0.00021696 0.35418 0.0001887 532.7905503192568 44.543 0.26736 44.543 44.397 44.664 0 36 13 4 0 0 0 0.05483 1 24194 24194 43.772 22.026 1 116000000 53211 3479 35889 36694 61816 61816 0.036968414719467546 RLSDAQIYV 9 Unmodified _RLSDAQIYV_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7920532226562 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 44.749 1 44.433 43.933 44.933 -0.31585 0 0 0 0.13831 1 23883 23883 38.176 9.6887 1 53212 3479 35889 36694 61817 61817 0.036968414719467546 RLSDVQIYV 9 Unmodified _RLSDVQIYV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8078002929688 2 546.806031 1091.59751 1.0106 0.00055258 -0.60844 -0.0003327 0.40212 0.00021988 546.8057739756089 54.516 0.46753 54.516 54.222 54.689 0 58 20 4 0 0 0 0.028475 2 30214 30214;30323 56.177 12.319 1 34601000 53213 3480 35890 36695 61818;61819 61818 0.05537414506034111 RLSDVQIYV 9 Unmodified _RLSDVQIYV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8062744140625 2 546.806031 1091.59751 0.084265 4.6076E-05 0.70604 0.00038607 0.79031 0.00043214 546.8064452859162 55.01 0.34369 54.532 54.389 54.733 -0.47798 43 16 3 0 0 0 0.2324 1 29905 29905 20.415 3.3016 1 61444000 53214 3480 35890 36695 61820 61820 0.05537414506034111 RLSDVQIYV 9 Unmodified _RLSDVQIYV_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8065795898438 2 546.806031 1091.59751 0.9801 0.00053593 -0.15409 -8.4255E-05 0.82602 0.00045167 546.8058911637956 61.334 0.60702 55.187 54.901 55.508 -6.1478 67 30 3 0 0 0 0.1685 1 39491 39491 26.268 3.5319 1 221200000 53215 3480 35890 36695 61821 61821 0.05537414506034111 RLSEFIPAVF 10 Unmodified _RLSEFIPAVF_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5;ENST00000523397.1_1_8:126095350-126096053:-|nuORF ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MSMS AL20221201_MKP_PDAC_01 4 589.8324584960938 2 589.832049 1177.64954 NaN NaN NaN NaN NaN NaN NaN 99.395 1 93.219 92.719 93.719 -6.1757 0 0 0 0.55063 1 66182 66182 23.79 5.6434 1 53216 7273 35891 36696 61822 61822 0.06782577919784671 RLSEVQASL 9 Unmodified _RLSEVQASL_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7857360839844 2 501.782556 1001.55056 0.80977 0.00040633 0.32159 0.00016137 1.1314 0.0005677 501.78277237861454 36.762 0.34927 36.762 36.628 36.977 0 37 16 3 0 0 0 0.036857 1 19477 19477 51.63 7.7715 1 16662000 53217 5958 35892 36697 61823 61823 0.04984554954910436 RLSEVQASL 9 Unmodified _RLSEVQASL_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7793579101562 2 501.782556 1001.55056 0.9483 0.00047584 -0.78498 -0.00039389 0.16331 8.1947E-05 501.7820041576722 42.05 0.47215 37.365 37.16 37.632 -4.6846 70 29 3 0 0 0 0.012668 2 25226 25226;25365 72.968 3.8811 1 55084000 53218 5958 35892 36697 61824;61825 61824 0.04984554954910436 RLSEVQASL 9 Unmodified _RLSEVQASL_ 0 0 0 ENSG00000148719|ENST00000444643|DNAJB12;ENST00000473051.1_1_10:74095570-74096546:-|nuORF ENSG00000148719|ENST00000444643|DNAJB12 ENSG00000148719|ENST00000444643|DNAJB12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.782556 1001.55056 -0.62065 -0.00031143 -0.29971 -0.00015039 -0.92036 -0.00046182 501.78231800023644 36.94 0.14957 36.69 36.623 36.773 -0.2497 -0.035968 -0.00054128 NaN 51.63 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 635510 53219 5958 35892 36697 0.04984554954910436 RLSEWFLLR 9 Unmodified _RLSEWFLLR_ 0 0 0 ENST00000598074.1_1_19:47226248-47228085:-|nuORF ENST00000598074.1_1_19:47226248-47228085:-|nuORF ENST00000598074.1_1_19:47226248-47228085:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2369079589844 3 407.236385 1218.68733 0.77233 0.00031452 -0.0036319 -1.479E-06 0.7687 0.00031304 407.2363510632138 63.957 0.33382 63.946 63.783 64.117 -0.010532 51 16 4 0 0 0 0.37578 1 34959 34959 13.615 4.6386 1 37616000 53220 15780 35893 36698 61826 61826 0.08673088905266013 RLSILTKLVKK 11 Unmodified _RLSILTKLVKK_ 0 0 0 ENSG00000162402|ENST00000294383|USP24;ENST00000482197.1_1_1:55559597-55560929:-|nuORF ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.9470825195312 2 649.947747 1297.88094 NaN NaN NaN NaN NaN NaN NaN 15.427 1 15.433 14.933 15.933 0.0057774 0 0 0 0.9435 1 7688 7688 0 0 1 53221 6854 35894 36699 61827 61827 0.24391625621456114 RLSLDYRRMMR 11 Unmodified _RLSLDYRRMMR_ 0 0 0 REV__ENSG00000143157|ENST00000367876|POGK REV__ENSG00000143157|ENST00000367876|POGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 748.901611328125 2 748.900479 1495.78641 NaN NaN NaN NaN NaN NaN NaN 59.306 1 59.253 58.753 59.753 -0.053062 0 0 0 0.93969 1 32317 32317 2.7352 0 1 + 53222 20609 35895 36700 61828 61828 0.058344205361891 RLSQTRSKGSP 11 Unmodified _RLSQTRSKGSP_ 0 0 0 ENST00000500093.2_1_5:55291038-55291134:+|nuORF ENST00000500093.2_1_5:55291038-55291134:+|nuORF ENST00000500093.2_1_5:55291038-55291134:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.231689453125 3 406.230071 1215.66838 NaN NaN NaN NaN NaN NaN NaN 101.72 1 95.545 95.045 96.045 -6.1757 0 0 0 0.94002 1 68275 68275 1.0136 0.31591 1 53223 14437 35896 36701 61829 61829 0.06917507543562351 RLSREALEV 9 Unmodified _RLSREALEV_ 0 0 0 ENST00000215739.12_1_22:21352933-21353245:+|nuORF ENST00000215739.12_1_22:21352933-21353245:+|nuORF ENST00000215739.12_1_22:21352933-21353245:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2061157226562 3 358.208495 1071.60366 NaN NaN NaN NaN NaN NaN NaN 31.036 1 31.036 30.536 31.536 0 0 0 0 0.82852 1 16151 16151 4.1895 0 1 53224 10994 35897 36702 61830 61830 0.07071932737562747 RLSRMRFLKLV 11 Unmodified _RLSRMRFLKLV_ 0 0 0 REV__ENSG00000142583|ENST00000377424|SLC2A5 REV__ENSG00000142583|ENST00000377424|SLC2A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 709.9446411132812 2 709.942473 1417.87039 NaN NaN NaN NaN NaN NaN NaN 77.704 1 77.756 77.256 78.256 0.052452 0 0 0 0.93933 1 42893 42893 2.9952 1.5133 1 + 53225 20580 35898 36703 61831 61831 0.17817319695404876 RLSRTQESFPS 11 Unmodified _RLSRTQESFPS_ 0 0 0 ENST00000409068.5_1_2:69748013-69748085:-|nuORF ENST00000409068.5_1_2:69748013-69748085:-|nuORF ENST00000409068.5_1_2:69748013-69748085:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.835693359375 2 654.338758 1306.66296 1.0818 0.00070786 0.83842 0.00054861 1.9202 0.0012565 654.8416961680188 96.894 0.35432 90.719 90.523 90.877 -6.1757 46 20 3 0 0 0 0.62338 1 64296 64296 10.151 2.5416 1 39288000 53226 12952 35899 36704 61832 61832 0.021897839610801384 RLSRYRKRHR 10 Unmodified _RLSRYRKRHR_ 0 0 0 REV__CON__Q3ZBS7 REV__CON__Q3ZBS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.6246032714844 3 476.623748 1426.84942 0.67714 0.00032274 -0.91774 -0.00043742 -0.2406 -0.00011467 476.6238488361464 101.83 0.08165 95.654 95.618 95.7 -6.1757 7 4 2 0 0 0 0.72464 1 68369 68369 0.15932 0 1 12478000 + + 53227 16880 35900 36705 61833 61833 0.1530649043077119 RLSTRERFSE 10 Unmodified _RLSTRERFSE_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.2977294921875 2 640.838925 1279.6633 -0.049816 -3.1924E-05 1.5576 0.00099817 1.5078 0.00096625 640.839969778096 37.608 0.16986 37.608 37.51 37.68 0 14 8 2 0 0 0 0.21783 1 20073 20073 24.021 8.1734 1 1191800 + 53228 17994 35901 36706 61834 61834 0.03465203680934792 RLTDSLVGSF 10 Unmodified _RLTDSLVGSF_ 0 0 0 ENST00000260126.8_1_8:70745308-70747283:-|nuORF ENST00000260126.8_1_8:70745308-70747283:-|nuORF ENST00000260126.8_1_8:70745308-70747283:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7957153320312 2 547.795663 1093.57677 -0.099296 -5.4394E-05 0.11469 6.2829E-05 0.015398 8.4349E-06 547.7958124305582 30.632 0.19585 30.663 30.541 30.737 0.030106 18 8 3 0 0 0 0.6785 1 16002 16002 5.2969 0.96765 1 1758700 53229 11221 35902 36707 61835 61835 0.03372824126381602 RLTEELQTV 9 Unmodified _RLTEELQTV_ 0 0 0 ENST00000484346.1_1_7:131189072-131190857:-|nuORF;ENST00000446198.5_1_7:131189072-131193853:-|nuORF;nc|ENSG00000128567|O00592-2|PODXL;ENSG00000128567|ENST00000378555|PODXL ENST00000484346.1_1_7:131189072-131190857:-|nuORF ENST00000484346.1_1_7:131189072-131190857:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.8023071289062 2 544.800946 1087.58734 NaN NaN NaN NaN NaN NaN NaN 44.074 1 39.309 38.809 39.809 -4.7648 0 0 0 0.041018 1 26860 26860 61.602 19.762 1 53230 4069 35903 36708 61836 61836 0.04704806780796389 RLTPKLMEV 9 Oxidation (M) _RLTPKLM(Oxidation (M))EV_ RLTPKLM(1)EV RLTPKLM(51)EV 0 0 1 ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.8182983398438 2 551.818084 1101.62162 0.38486 0.00021237 -0.17439 -9.6234E-05 0.21047 0.00011614 551.8181188374581 31.209 0.29984 31.107 30.939 31.238 -0.10269 33 11 4 0 0 0 0.037253 1 16228 16228 51.415 28.679 1 24214000 53231 5875 35904 36709 61837 61837 1055 0.07486931668040597 RLTPKLMEV 9 Oxidation (M) _RLTPKLM(Oxidation (M))EV_ RLTPKLM(1)EV RLTPKLM(46)EV 0 0 1 ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8181762695312 2 551.818084 1101.62162 0.66892 0.00036912 -1.0691 -0.00058996 -0.40021 -0.00022084 551.8176192374777 35.476 0.46441 31.283 31.076 31.541 -4.1928 73 28 4 0 0 0 0.047714 1 20538 20538 45.74 24.203 1 55039000 53232 5875 35904 36709 61838 61838 1055 0.07486931668040597 RLTPKLMEV 9 Unmodified _RLTPKLMEV_ 0 0 0 ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.883056640625 3 362.882843 1085.6267 1.741 0.00063178 -0.43879 -0.00015923 1.3022 0.00047255 362.88280582315963 47.294 0.44778 42.214 42.033 42.48 -5.0805 50 29 2 0 0 0 0.18144 2 29287 29287;29425 18.721 6.221 1 16457000 53233 5875 35904 36710 61839;61840 61839 0.08731235530672166 RLTQIRLIL 9 Unmodified _RLTQIRLIL_ 0 0 0 REV__ENST00000264888.5_1_4:76924418-76924595:-|nuORF REV__ENST00000264888.5_1_4:76924418-76924595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9207153320312 3 375.920397 1124.73936 1.6773 0.00063053 -0.37149 -0.00013965 1.3058 0.00049088 375.92027799350126 89.524 0.53871 83.348 83.076 83.615 -6.1757 87 29 4 0 0 0 0.091924 1 59104 59104 34.932 1.4872 1 101400000 + 53234 25082 35905 36711 61841 61841 0.18198252319029962 RLTQTVAHL 9 Unmodified _RLTQTVAHL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8065185546875 2 519.806365 1037.59818 0.64687 0.00033625 -0.070808 -3.6806E-05 0.57606 0.00029944 519.8063708532794 32.816 0.36143 28.96 28.753 29.115 -3.8562 45 19 3 0 0 0 0.012668 2 18663 18663;18800 72.968 29.11 1 41216000 53235 9571 35906 36712 61842;61843 61842 0.08088253945743418 RLTQTVAHL 9 Unmodified _RLTQTVAHL_ 0 0 0 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 ENSG00000187608|ENST00000649529|ISG15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.806365 1037.59818 0.09646 5.014E-05 0.040149 2.087E-05 0.13661 7.101E-05 519.8059336176532 28.824 0.16653 28.854 28.777 28.943 0.030104 -0.065579 0.00014526 NaN 72.968 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1634500 53236 9571 35906 36712 0.08088253945743418 RLTSLVPFV 9 Unmodified _RLTSLVPFV_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3167724609375 2 516.316035 1030.61752 0.5061 0.00026131 -0.35309 -0.00018231 0.153 7.8998E-05 516.3158531384947 78.946 0.24498 79.001 78.86 79.105 0.05497 23 9 3 0 0 0 0.30202 1 43616 43616 17.113 1.2657 1 2516500 53237 2503 35907 36713 61844 61844 0.10343210236646883 RLTYYAQEERD 11 Unmodified _RLTYYAQEERD_ 0 0 0 REV__ENSG00000081138|ENST00000397968|CDH7 REV__ENSG00000081138|ENST00000397968|CDH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 722.3495483398438 2 722.34678 1442.67901 NaN NaN NaN NaN NaN NaN NaN 60.634 1 60.634 60.134 61.134 0 0 0 0 0.94002 1 33815 33815 2.4985 1.0166 1 + 53238 17683 35908 36714 61845 61845 -0.0246255459267104 RLVESKVEL 9 Unmodified _RLVESKVEL_ 0 0 0 ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENST00000452767.1_1_10:71914847-71917573:-|nuORF ENSG00000079332|ENST00000373241|SAR1A ENSG00000079332|ENST00000373241|SAR1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2776489257812 2 536.821681 1071.62881 0.39146 0.00021014 0.80415 0.00043169 1.1956 0.00064183 536.822129262729 38.516 0.18484 34.147 33.98 34.164 -4.3689 14 11 2 0 0 0 0.18811 1 22638 22638 12.241 0 1 5836100 53239 1272 35909 36715 61846 61846 0.09585987540140195 RLVESKVEL 9 Unmodified _RLVESKVEL_ 0 0 0 ENSG00000079332|ENST00000373241|SAR1A;nc|ENSG00000079332|Q9NR31-2|SAR1A;ENST00000452767.1_1_10:71914847-71917573:-|nuORF ENSG00000079332|ENST00000373241|SAR1A ENSG00000079332|ENST00000373241|SAR1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.821681 1071.62881 -0.3922 -0.00021054 0.35584 0.00019103 -0.036356 -1.9517E-05 536.8218161763531 33.894 0.1663 33.894 33.804 33.97 0 -0.1265 -0.00017832 NaN 12.241 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2141700 53240 1272 35909 36715 0.09585987540140195 RLVFVTNIH 9 Unmodified _RLVFVTNIH_ 0 0 0 REV__nc|ENSG00000061918|Q02153-2|GUCY1B1 REV__nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8252563476562 2 549.824558 1097.63456 0.77774 0.00042762 0.41803 0.00022984 1.1958 0.00065746 549.8250420473009 50.672 0.21813 50.618 50.51 50.728 -0.053871 17 10 2 0 0 0 0.2546 1 27421 27421 26.884 8.7487 1 2011600 + 53241 17335 35910 36716 61847 61847 0.08965130842443614 RLVIRKLR 8 Unmodified _RLVIRKLR_ 0 0 0 ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1053.904174804688 1 1053.73674 1052.72947 -0.0019818 -2.0883E-06 -2.2749 -0.0023971 -2.2768 -0.0023992 1053.736881477215 42.812 0.12036 42.502 42.404 42.524 -0.31039 6 4 2 0 0 0 0.81107 1 22720 22720 0 0 1 4979400 53242 9139 35911 36717 61848 61848 0.2052110910428837 RLVIVNIK 8 Unmodified _RLVIVNIK_ 0 0 0 REV__nc|ENSG00000106823|O94769-2|ECM2 REV__nc|ENSG00000106823|O94769-2|ECM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.824462890625 2 477.826569 953.638586 NaN NaN NaN NaN NaN NaN NaN 14.026 1 13.995 13.495 14.495 -0.030868 0 0 0 0.97444 1 6801 6801 0.79363 0 1 + 53243 18540 35912 36718 61849 61849 0.15991220336161405 RLVKFRKRRRL 11 Unmodified _RLVKFRKRRRL_ 0 0 0 REV__ENSG00000204612|ENST00000376708|FOXB2 REV__ENSG00000204612|ENST00000376708|FOXB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 764.5118408203125 2 764.512777 1527.011 NaN NaN NaN NaN NaN NaN NaN 104.48 1 104.43 103.93 104.93 -0.048737 0 0 0 0.9435 1 58006 58006 0 0 1 + 53244 24188 35913 36719 61850 61850 0.26857659463848904 RLVLWRSKWKK 11 Unmodified _RLVLWRSKWKK_ 0 0 0 REV__nc|ENSG00000175920|Q18PE1-3|DOK7 REV__nc|ENSG00000175920|Q18PE1-3|DOK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.9833374023438 3 500.6489 1498.92487 1.7016 0.00085191 -1.4049 -0.00070339 0.29666 0.00014852 500.64787530322735 104.55 0.10368 98.373 98.313 98.417 -6.1757 15 6 3 0 0 0 0.74046 1 69996 69996 0.45452 0.35968 1 11744000 + 53245 29798 35914 36720 61851 61851 0.19536654838475442 RLVNIVPKK 9 Unmodified _RLVNIVPKK_ 0 0 0 PPHLN1-TIMELESS|2|fusion;PPHLN1-TIMELESS|1|fusion;PPHLN1-TIMELESS|6|fusion;ENST00000549774.5_1_12:42720030-42749025:+|nuORF;ENST00000550535.5_1_12:42720030-42753098:+|nuORF;nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1 PPHLN1-TIMELESS|2|fusion;nc|ENSG00000134283|Q8NEY8-9|PPHLN1 PPHLN1-TIMELESS|2|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1067.082763671875 1 1066.70953 1065.70225 0.68467 0.00073035 -2.2459 -0.0023957 -1.5612 -0.0016653 1067.7066532408542 79.232 0.17815 79.287 79.158 79.336 0.05497 9 6 2 0 0 0 0.21893 1 43761 43761 0.52476 0 1 2819500 53246 16691;4583 35915 36721 61852 61852 0.1720258077325525 RLVQLRRLAWL 11 Unmodified _RLVQLRRLAWL_ 0 0 0 ENST00000418710.2_1_7:20824815-20825286:-|nuORF ENST00000418710.2_1_7:20824815-20825286:-|nuORF ENST00000418710.2_1_7:20824815-20825286:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.3059692382812 3 475.305134 1422.89357 -0.64173 -0.00030502 0.27023 0.00012844 -0.37151 -0.00017658 475.30589613540303 103.51 0.14116 103.46 103.4 103.55 -0.047928 7 5 2 0 0 0 0.7453 1 57504 57504 0 0 1 1695900 53247 13073 35916 36722 61853 61853 0.19904081804429552 RLVRMKVF 8 Unmodified _RLVRMKVF_ 0 0 0 ENST00000566292.5_1_16:58035387-58044017:+|nuORF;ENST00000565662.5_1_16:58035387-58051252:+|nuORF;nc|ENSG00000103005|Q9BQ65-3|USB1;nc|ENSG00000103005|Q9BQ65-2|USB1;ENSG00000103005|ENST00000219281|USB1 ENST00000566292.5_1_16:58035387-58044017:+|nuORF ENST00000566292.5_1_16:58035387-58044017:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.22021484375 3 350.21979 1047.63754 0.63004 0.00022065 -0.12422 -4.3503E-05 0.50582 0.00017715 350.2198404113678 50.792 0.52821 50.378 50.112 50.64 -0.41351 36 25 2 0 0 0 0.80447 1 27372 27372 3.9444 2.2918 1 1825800 53248 2091 35917 36723 61854 61854 0.11562682695625881 RLVRRRVGRWK 11 Unmodified _RLVRRRVGRWK_ 0 0 0 ENST00000445193.7_2_3:58292092-58292350:+|nuORF ENST00000445193.7_2_3:58292092-58292350:+|nuORF ENST00000445193.7_2_3:58292092-58292350:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.6514587402344 3 494.651527 1480.93275 -0.40209 -0.00019889 0.22798 0.00011277 -0.17411 -8.6121E-05 494.6517313490879 103.65 0.12411 103.6 103.55 103.67 -0.047928 7 4 2 0 0 0 0.7453 1 57585 57585 0 0 1 1746600 53249 13451 35918 36724 61855 61855 0.2115222687862115 RLWDEVMQAVA 11 Unmodified _RLWDEVMQAVA_ 0 0 0 ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF;nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1 ENST00000414990.2_3_7:143295168-143301929:+|nuORF ENST00000414990.2_3_7:143295168-143301929:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.3363647460938 2 659.33463 1316.65471 1.1912 0.00078542 0.36177 0.00023853 1.553 0.001024 659.8365046611933 97.517 0.16302 91.341 91.221 91.384 -6.1757 16 8 3 0 0 0 0.12646 1 64605 64605 40.725 16.704 1 15642000 53250 10089 35919 36725 61856 61856 0.00904513720115574 RLWEGAISI 9 Unmodified _RLWEGAISI_ 0 0 0 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7953491210938 2 522.795466 1043.57638 0.72829 0.00038075 -0.39368 -0.00020582 0.33461 0.00017493 522.795325749017 65.672 0.28416 65.672 65.52 65.804 7.6294E-06 22 13 2 0 0 0 0.085319 1 35997 35997 36.506 5.8697 1 5419000 53251 2458 35920 36726 61857 61857 0.056334491971938405 RLWEKLTLL 9 Unmodified _RLWEKLTLL_ 0 0 0 nc|ENSG00000130921|Q9H3J6-2|MTRFR;ENST00000538888.5_1_12:123738221-123738578:+|nuORF;ENSG00000130921|ENST00000253233|MTRFR nc|ENSG00000130921|Q9H3J6-2|MTRFR nc|ENSG00000130921|Q9H3J6-2|MTRFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2449340820312 3 391.24477 1170.71248 0.62894 0.00024607 0.26326 0.000103 0.89221 0.00034907 391.2447696450803 66.87 0.25135 66.888 66.733 66.985 0.018036 30 11 3 0 0 0 0.044011 1 36687 36687 37.075 21.336 1 5838500 53252 4275 35921 36727 61858 61858 0.13395143707839452 RLWEKLTLL 9 Unmodified _RLWEKLTLL_ 0 0 0 nc|ENSG00000130921|Q9H3J6-2|MTRFR;ENST00000538888.5_1_12:123738221-123738578:+|nuORF;ENSG00000130921|ENST00000253233|MTRFR nc|ENSG00000130921|Q9H3J6-2|MTRFR nc|ENSG00000130921|Q9H3J6-2|MTRFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2462158203125 3 391.24477 1170.71248 1.0695 0.00041844 0.3818 0.00014938 1.4513 0.00056782 391.24519692028434 98.576 0.17276 92.401 92.293 92.465 -6.1757 17 12 2 0 0 0 0.044011 1 65409 65409 37.075 17.449 1 15097000 53253 4275 35921 36727 61859 61859 0.13395143707839452 RLWEYLLEL 9 Unmodified _RLWEYLLEL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.844482421875 2 617.845156 1233.67576 2.5373 0.0015677 -1.4479 -0.00089457 1.0894 0.00067309 617.8442664563288 96.329 0.25295 96.322 96.163 96.416 -0.007019 22 8 4 0 0 0 0.094905 1 53500 53500 43.772 7.2662 1 4799600 53254 3108 35922 36728 61860 61860 0.06826847091269883 RLWFFRSYCF 10 Unmodified _RLWFFRSYCF_ 0 0 0 ENST00000443617.6_1_15:64041916-64041982:-|nuORF ENST00000443617.6_1_15:64041916-64041982:-|nuORF ENST00000443617.6_1_15:64041916-64041982:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 712.8505859375 2 712.85025 1423.68595 NaN NaN NaN NaN NaN NaN NaN 93.779 1 93.359 92.859 93.859 -0.42044 0 0 0 1.0019 1 51241 51241 0.45834 0 1 53255 13427 35923 36729 61861 61861 -0.008948684551342012 RLWGEPVNL 9 Unmodified _RLWGEPVNL_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3016967773438 2 542.300916 1082.58728 -0.50633 -0.00027458 0.23232 0.00012599 -0.274 -0.00014859 542.3010183657399 61.248 0.32576 60.759 60.617 60.943 -0.48932 44 15 4 0 0 0 0.025842 1 33326 33326 57.722 37.268 1 7353600 53256 3033;3790 35924 36730 61862 61862 0.04928851571457926 RLWGEPVNL 9 Unmodified _RLWGEPVNL_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3014526367188 2 542.300916 1082.58728 0.31467 0.00017065 1.0308 0.00055898 1.3454 0.00072963 542.300993394935 60.831 0.29286 60.787 60.613 60.906 -0.04351 21 14 2 0 0 0 0.017075 1 33198 33198 66.457 26.507 1 4399200 53257 3033;3790 35924 36730 61863 61863 0.04928851571457926 RLWPKIQGL 9 Unmodified _RLWPKIQGL_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MSMS AL20221201_MKP_PDAC_01 4 555.84130859375 2 555.842751 1109.67095 NaN NaN NaN NaN NaN NaN NaN 91.371 1 85.196 84.696 85.696 -6.1757 0 0 0 0.17798 1 60393 60393 36.127 5.4905 1 53258 7728 35925 36731 61864 61864 0.12050007739162538 RLWQRRRWFVL 11 Unmodified _RLWQRRRWFVL_ 0 0 0 REV__ENST00000595444.1_2_19:17403433-17403508:+|nuORF REV__ENST00000595444.1_2_19:17403433-17403508:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 808.4743041992188 2 808.47586 1614.93717 NaN NaN NaN NaN NaN NaN NaN 98.433 1 98.24 97.74 98.74 -0.19321 0 0 0 0.9435 1 53756 53756 0 0 1 + 53259 29210 35926 36732 61865 61865 0.15429691301528692 RLWRGRQT 8 Unmodified _RLWRGRQT_ 0 0 0 REV__ENST00000426882.5_1_6:30294318-30294846:-|nuORF REV__ENST00000426882.5_1_6:30294318-30294846:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2101135253906 3 358.208941 1071.60499 -0.18484 -6.6213E-05 2.8493 0.0010207 2.6645 0.00095445 358.20980258918684 37.556 0.39948 37.573 37.394 37.793 0.01704 25 19 2 0 0 0 8.7369 1 19967 19967 3.5965 0 1 2764100 + 53260 26913 35927 36733 61866 61866 0.07205611616973329 RLWRGRQT 8 Unmodified _RLWRGRQT_ 0 0 0 REV__ENST00000426882.5_1_6:30294318-30294846:-|nuORF REV__ENST00000426882.5_1_6:30294318-30294846:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 358.208941 1071.60499 0.04142 1.4837E-05 3.7245 0.0013341 3.7659 0.001349 358.2101269583362 37.572 0.16957 37.572 37.493 37.662 0 -0.00043093 0.00070422 NaN 3.5965 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1047000 + 53261 26913 35927 36733 0.07205611616973329 RLYCDNCYL 9 Unmodified _RLYCDNCYL_ 0 0 0 REV__ENST00000482116.1_1_13:76423246-76430812:+|nuORF REV__ENST00000482116.1_1_13:76423246-76430812:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1726684570312 3 388.172177 1161.4947 0.54513 0.0002116 2.5723 0.0009985 3.1174 0.0012101 388.1727888154635 36.61 0.22306 36.61 36.487 36.71 0 15 10 2 0 0 0 0.54444 1 19455 19455 2.7352 0.45242 1 2236800 + 53262 20142 35928 36734 61867 61867 -0.0795873754857439 RLYDGLFKV 9 Unmodified _RLYDGLFKV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8194580078125 2 555.818941 1109.62333 0.94643 0.00052604 -0.39538 -0.00021976 0.55105 0.00030629 555.8184352401213 57.192 0.24154 57.126 57.018 57.259 -0.066036 25 11 3 0 0 0 0.040683 1 31120 31120 49.554 9.597 1 7001600 53263 7694;14986 35929 36735 61868 61868 0.0729030874831551 RLYDTHITV 9 Unmodified _RLYDTHITV_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.30419921875 2 559.303655 1116.59276 0.76239 0.00042641 -0.44339 -0.00024799 0.319 0.00017842 559.3037929768009 43.892 0.46826 39.127 38.791 39.259 -4.7648 45 29 2 0 0 0 0.11784 1 26694 26694 31.268 2.7738 1 12395000 53264 2029;13824 35930 36736 61869 61869 0.03912530363277256 RLYDVSSILK 10 Unmodified _RLYDVSSILK_ 0 0 0 REV__ENSG00000133059|ENST00000367162|DSTYK REV__ENSG00000133059|ENST00000367162|DSTYK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.56787109375 3 398.567801 1192.68157 -0.046571 -1.8562E-05 -0.058891 -2.3472E-05 -0.10546 -4.2034E-05 398.5677142689415 28.758 0.27266 28.788 28.621 28.894 0.029564 14 10 2 0 0 0 0.64628 1 15003 15003 5.0475 1.7279 1 2722200 + 53265 19903 35931 36737 61870 61870 0.09293945602939857 RLYDVSSILK 10 Unmodified _RLYDVSSILK_ 0 0 0 REV__ENSG00000133059|ENST00000367162|DSTYK REV__ENSG00000133059|ENST00000367162|DSTYK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5671691894531 3 398.567801 1192.68157 -0.28743 -0.00011456 -0.51839 -0.00020661 -0.80582 -0.00032117 398.5675393366168 32.463 0.22491 32.493 32.366 32.591 0.029743 13 8 2 0 0 0 0.67459 1 17049 17049 3.0723 1.33 1 1733700 + 53266 19903 35931 36737 61871 61871 0.09293945602939857 RLYEKERQQ 9 Unmodified _RLYEKERQQ_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MSMS AL20221201_MKP_PDAC_01 4 625.33544921875 2 625.336018 1248.65748 NaN NaN NaN NaN NaN NaN NaN 41.707 1 37.099 36.599 37.599 -4.6079 0 0 0 0.41144 1 25085 25085 19.362 10.386 1 + 53267 21005 35932 36738 61872 61872 0.04310105169270173 RLYGDESEL 9 Unmodified _RLYGDESEL_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000604509.5_1_10:122659587-122664224:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.17822265625 3 361.176861 1080.50875 0.11194 4.0431E-05 2.2503 0.00081277 2.3623 0.0008532 361.17756956625635 60.118 0.31559 59.627 59.45 59.766 -0.49079 21 15 2 0 0 0 0.54444 1 32706 32706 2.7352 0 1 2760500 53268 3488 35933 36739 61873 61873 -0.028280455242793323 RLYISIKPF 9 Unmodified _RLYISIKPF_ 0 0 0 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2;REV__nc|ENSG00000182240|Q9Y5Z0-5|BACE2 REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3381958007812 2 568.844959 1135.67537 1.5882 0.00090342 -1.7888 -0.0010176 -0.20065 -0.00011414 568.8445406114739 98.172 0.22552 91.996 91.847 92.072 -6.1757 30 14 3 0 0 0 0.28047 1 65008 65008 18.135 4.6271 1 62379000 + 53269 29832;23253 35934 36740 61874 61874 0.11295472162078113 RLYPEGLAQL 10 Unmodified _RLYPEGLAQL_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.3267822265625 2 580.327131 1158.63971 0.12702 7.3711E-05 1.6978 0.00098526 1.8248 0.001059 580.3282084405417 60.133 0.25664 59.643 59.509 59.766 -0.49079 22 12 2 0 0 0 0.02847 1 32725 32725 70.332 32.358 1 6834000 53270 6670 35935 36741 61875 61875 0.0667338991440829 RLYPWGVVEV 10 Unmodified _RLYPWGVVEV_ 0 0 0 ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF ENSG00000168385|ENST00000391971|SEPTIN2 ENSG00000168385|ENST00000391971|SEPTIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.339111328125 2 609.337498 1216.66044 0.43404 0.00026448 0.49707 0.00030288 0.93111 0.00056736 609.3377618759356 74.244 0.38242 74.288 74.137 74.52 0.043983 46 16 4 0 0 0 0.17804 2 40906 40906;41014 49.554 30.297 1 7217000 53271 7753 35936 36742 61876;61877 61876 0.06077980294094232 RLYPWGVVEV 10 Unmodified _RLYPWGVVEV_ 0 0 0 ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF ENSG00000168385|ENST00000391971|SEPTIN2 ENSG00000168385|ENST00000391971|SEPTIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.33740234375 2 609.337498 1216.66044 1.2224 0.00074486 -0.0058509 -3.5652E-06 1.2166 0.00074129 609.3373611798496 95.792 0.27074 89.616 89.496 89.767 -6.1757 48 16 4 0 0 0 0.040614 2 63419 63419;63550 82.529 63.272 1 90259000 53272 7753 35936 36742 61878;61879 61878 0.06077980294094232 RLYPWGVVEV 10 Unmodified _RLYPWGVVEV_ 0 0 0 ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF ENSG00000168385|ENST00000391971|SEPTIN2 ENSG00000168385|ENST00000391971|SEPTIN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 609.337498 1216.66044 0.75769 0.00046169 -0.41485 -0.00025279 0.34283 0.0002089 609.3371605313181 74.824 0.28595 74.348 74.231 74.517 -0.47588 0.030197 -0.00093418 NaN 49.554 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 638120 53273 7753 35936 36742 0.06077980294094232 RLYQFDVSL 9 Unmodified _RLYQFDVSL_ 0 0 0 ENSG00000189325|ENST00000437635|BNIP5 ENSG00000189325|ENST00000437635|BNIP5 ENSG00000189325|ENST00000437635|BNIP5 MSMS AL20221201_MKP_PDAC_01 4 570.8054809570312 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 85.855 1 79.68 79.18 80.18 -6.1757 0 0 0 0.083082 1 56570 56570 47.749 20.12 1 53274 9742 35937 36743 61880 61880 0.0332941450603812 RLYQIGENTL 10 Unmodified _RLYQIGENTL_ 0 0 0 REV__ENST00000480942.1_1_6:34392413-34392935:-|nuORF REV__ENST00000480942.1_1_6:34392413-34392935:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.826904296875 2 603.827495 1205.64044 -1.4772 -0.00089197 0.089999 5.4344E-05 -1.3872 -0.00083763 603.8275901383447 32.484 0.20623 32.484 32.393 32.599 0 24 13 2 0 0 0 0.038363 1 16965 16965 63.961 7.7835 1 13936000 + 53275 16814 35938 36744 61881 61881 0.04584184563486815 RLYRVGWRWQF 11 Unmodified _RLYRVGWRWQF_ 0 0 0 REV__ENSG00000161277|ENST00000292894|THAP8 REV__ENSG00000161277|ENST00000292894|THAP8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 783.8876342773438 2 783.925669 1565.83679 0.17773 0.00013933 0.17978 0.00014093 0.35751 0.00028026 784.4265767494837 71.457 0.25797 70.98 70.839 71.097 -0.47735 26 10 3 0 0 0 0.30452 1 39073 39073 3.2813 1.7994 1 996830 + 53276 21593 35939 36745 61882 61882 0.07650034247876647 RLYSVSYLL 9 Unmodified _RLYSVSYLL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153577219-153578780:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3206787109375 2 557.318774 1112.623 0.84815 0.00047269 0.56164 0.00031301 1.4098 0.0007857 557.3190405654905 68.969 0.3235 68.994 68.818 69.141 0.025146 20 15 2 0 0 0 0.34748 1 37918 37918 20.415 6.9067 1 2547300 53277 9884 35940 36746 61883 61883 0.07118889028470221 RLYTQGRVF 9 Unmodified _RLYTQGRVF_ 0 0 0 ENST00000484243.1_1_1:65886407-65895881:+|nuORF ENST00000484243.1_1_1:65886407-65895881:+|nuORF ENST00000484243.1_1_1:65886407-65895881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5492858886719 3 380.548852 1138.62473 0.82074 0.00031233 -0.4946 -0.00018822 0.32614 0.00012411 380.5486628919513 47.288 0.24757 47.249 47.138 47.385 -0.038643 24 11 3 0 0 0 0.28023 1 25475 25475 12.873 5.7709 1 2777500 53278 14149 35941 36747 61884 61884 0.06095942837100665 RLYWLYWQDWF 11 Unmodified _RLYWLYWQDWF_ 0 0 0 REV__nc|ENSG00000160145|O60229-2|KALRN REV__nc|ENSG00000160145|O60229-2|KALRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.272216796875 3 559.273388 1674.79833 0.13386 7.4863E-05 -1.5513 -0.0008676 -1.4174 -0.00079274 559.2720975987289 31.506 0.17366 31.536 31.432 31.606 0.030104 15 7 3 0 0 0 0.73237 1 16516 16516 1.2148 1.2148 1 2669700 + 53279 29733 35942 36748 61885 61885 -0.012073161773287211 RMDCKSLKER 10 Unmodified _RMDCKSLKER_ 0 0 0 REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF REV__ENST00000585568.5_1_19:44513139-44515613:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.0700073242188 2 633.326282 1264.63801 NaN NaN NaN NaN NaN NaN NaN 104.17 1 97.992 97.492 98.492 -6.1757 0 0 0 0.97302 1 69779 69779 3.5965 0 1 + 53280 21503 35943 36749 61886 61886 0.016276895624969256 RMEIMMDE 8 Unmodified _RMEIMMDE_ 0 0 0 REV__nc|ENSG00000162782|Q8NAT2|TDRD5 REV__nc|ENSG00000162782|Q8NAT2|TDRD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7214965820312 2 527.721938 1053.42932 0.4198 0.00022154 0.66265 0.00034969 1.0824 0.00057123 527.7218177770925 85.575 0.19331 85.575 85.484 85.677 0 11 7 2 0 0 0 0.80799 1 47411 47411 0 0 1 308520 + 53281 21693 35944 36750 61887 61887 -0.09525475065902356 RMELVEQRTE 10 Unmodified _RMELVEQRTE_ 0 0 0 REV__nc|ENSG00000147526|O75410-3|TACC1 REV__nc|ENSG00000147526|O75410-3|TACC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883056640625 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 53.276 1 53.213 52.713 53.713 -0.063423 0 0 0 0.99514 1 28889 28889 0.50596 0.17668 1 + 53282 20896 35945 36751 61888 61888 0.006550218521169882 RMERGGGG 8 Unmodified _RMERGGGG_ 0 0 0 REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF REV__ENST00000401088.8_1_1:16723612-16723933:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.1992492675781 2 410.198136 818.381719 0.72842 0.0002988 1.2092 0.00049603 1.9377 0.00079482 410.1986074286739 74.454 0.38662 73.978 73.768 74.155 -0.47588 29 16 2 0 0 0 0.80975 2 40691 40691;40797 0.79363 0 1 1208500 + 53283 26607 35946 36752 61889;61890 61889 -0.03473625159574567 RMEWAGKQRDF 11 Unmodified _RMEWAGKQRDF_ 0 0 0 ENST00000528527.5_3_11:8747747-8832141:-|nuORF;ENST00000534783.1_1_11:8752693-8832231:-|nuORF;ENST00000313726.10_1_11:8772194-8832231:-|nuORF ENST00000528527.5_3_11:8747747-8832141:-|nuORF ENST00000528527.5_3_11:8747747-8832141:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 712.3463134765625 2 712.348603 1422.68265 NaN NaN NaN NaN NaN NaN NaN 56.145 1 55.66 55.16 56.16 -0.48554 0 0 0 0.93777 1 30476 30476 8.1555 5.1603 1 53284 11718 35947 36753 61891 61891 -0.011781632998008718 RMFDGKFVV 9 Unmodified _RMFDGKFVV_ 0 0 0 ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-3|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 ENSG00000152332|ENST00000489294|UHMK1 MSMS AL20221201_MKP_PDAC_01 4 549.7923583984375 2 549.791869 1097.56919 NaN NaN NaN NaN NaN NaN NaN 79.19 1 73.014 72.514 73.514 -6.1757 0 0 0 0.61214 1 51877 51877 12.241 2.0573 1 53285 6178 35948 36754 61892 61892 0.02430393325107616 RMFGIPVVV 9 Unmodified _RMFGIPVVV_ 0 0 0 ENSG00000100714|ENST00000652337|MTHFD1;ENST00000413059.1_1_X:57419493-57419883:-|nuORF ENSG00000100714|ENST00000652337|MTHFD1 ENSG00000100714|ENST00000652337|MTHFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2994995117188 2 509.29933 1016.58411 1.36 0.00069264 1.338 0.00068146 2.698 0.0013741 509.2993568067693 98.325 0.11938 92.15 92.087 92.206 -6.1757 18 7 3 0 0 0 0.095405 1 65202 65202 34.102 9.4286 1 35247000 53286 1866 35949 36755 61893 61893 0.07647885193114234 RMFTYGCTWEF 11 Unmodified _RMFTYGCTWEF_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.8724975585938 3 480.874019 1439.60023 0.26819 0.00012897 -1.432 -0.00068863 -1.1639 -0.00055967 480.87335529389344 83.704 0.33743 83.704 83.543 83.88 0 59 17 5 0 0 0 0.74203 1 46374 46374 0.08335 0 1 1086700 53287 5248 35950 36756 61894 61894 -0.10198821422977744 RMGAGIAVLF 10 Unmodified _RMGAGIAVLF_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1;ENST00000465893.1_1_6:41037763-41039373:-|nuORF ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7949829101562 2 517.794412 1033.57427 1.2135 0.00062836 -2.205 -0.0011418 -0.9915 -0.00051339 517.7940250766676 97.949 0.13052 91.773 91.687 91.817 -6.1757 12 7 3 0 0 0 0.16524 1 64943 64943 37.974 7.7492 1 8647000 53288 3804 35951 36757 61895 61895 0.05882697187712438 RMGTDICYY 9 Unmodified _RMGTDICYY_ 0 0 0 ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2425537109375 2 561.241352 1120.46815 0.54811 0.00030762 0.73551 0.0004128 1.2836 0.00072042 561.2418813432444 97.273 0.37347 97.03 96.772 97.146 -0.24277 31 16 3 0 0 0 0.59218 1 53145 53145 1.8442 0 1 899000 53289 4664 35952 36758 61896 61896 -0.08726426439898205 RMHDCILYS 9 Unmodified _RMHDCILYS_ 0 0 0 REV__nc|ENSG00000144837|Q53H76-4|PLA1A REV__nc|ENSG00000144837|Q53H76-4|PLA1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.26123046875 2 569.262619 1136.51068 0.69131 0.00039354 -1.376 -0.00078329 -0.68466 -0.00038975 569.2622175676112 64.689 0.29959 64.204 64.037 64.337 -0.48512 20 13 2 0 0 0 0.34999 1 35285 35285 14.838 0 1 1808400 + 53290 20740 35953 36759 61897 61897 -0.05211031311660008 RMHDCILYS 9 Unmodified _RMHDCILYS_ 0 0 0 REV__nc|ENSG00000144837|Q53H76-4|PLA1A REV__nc|ENSG00000144837|Q53H76-4|PLA1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.262619 1136.51068 0.99366 0.00056566 -2.3953 -0.0013636 -1.4017 -0.00079792 569.2612089583414 64.216 0.18127 64.205 64.117 64.298 -0.010529 0.00079684 -0.00047088 NaN 14.838 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1685400 + 53291 20740 35953 36759 -0.05211031311660008 RMHLALVHF 9 Unmodified _RMHLALVHF_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2123718261719 3 375.211294 1122.61205 NaN NaN NaN NaN NaN NaN NaN 36.661 1 36.683 36.183 37.183 0.021545 0 0 0 0.82396 1 19432 19432 2.7352 0 1 + 53292 20701 35954 36760 61898 61898 0.05565208173175051 RMHLTQRWY 9 Unmodified _RMHLTQRWY_ 0 0 0 REV__ENST00000439586.1_1_Y:7937590-7937806:-|nuORF REV__ENST00000439586.1_1_Y:7937590-7937806:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8882141113281 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 40.913 1 40.61 40.11 41.11 -0.30304 0 0 0 0.85798 1 21646 21646 0.23584 0.095952 1 + 53293 27064 35955 36761 61899 61899 0.01190790225246019 RMHTTFEHDI 10 Unmodified _RMHTTFEHDI_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.8002319335938 2 643.800954 1285.58736 -0.030831 -1.9849E-05 0.85553 0.00055079 0.8247 0.00053094 643.8013768055744 86.225 0.42714 86.225 85.972 86.399 0 47 20 3 0 0 0 0.71276 1 47711 47711 1.4819 0.15237 1 645660 53294 3108 35956 36762 61900 61900 -0.044015164908387305 RMHVMSHRNLN 11 Unmodified _RMHVMSHRNLN_ 0 0 0 REV__ENSG00000256294|ENST00000262894|ZNF225 REV__ENSG00000256294|ENST00000262894|ZNF225 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2642517089844 3 465.567923 1393.68194 -0.11751 -5.4708E-05 -2.1114 -0.00098302 -2.229 -0.0010377 465.5669048887039 53.952 0.43675 53.885 53.725 54.162 -0.066936 43 21 3 0 0 0 0.30558 1 29262 29262 2.4348 0.69251 1 4002000 + 53295 24552 35957 36763 61901 61901 0.0008471877954434603 RMIGQICEV 9 Carbamidomethyl (C),Oxidation (M) _RM(Oxidation (M))IGQIC(Carbamidomethyl (C))EV_ RMIGQIC(1)EV RM(1)IGQICEV RMIGQIC(48)EV RM(48)IGQICEV 0 1 1 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-8|TSC2;ENST00000461648.2_1_16:2098014-2103834:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2783813476562 2 561.275726 1120.5369 -0.35366 -0.0001985 0.52012 0.00029193 0.16646 9.343E-05 561.2768383670926 34.313 0.31126 34.313 34.207 34.518 0 33 15 3 0 0 0 0.044011 1 18065 18065 47.749 17.112 1 4365000 53296 16096;16097 35958 36764 61902 61902 1008 1792 -0.01854762140214916 RMIRSEVL 8 Unmodified _RMIRSEVL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1522065-1522398:-|nuORF ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2919921875 2 502.289494 1002.56443 0.66185 0.00033244 3.1706 0.0015925 3.8324 0.001925 502.29189950315384 51.678 0.076202 46.029 45.976 46.052 -5.649 7 4 2 0 0 0 0.71527 1 32535 32535 15.847 1.0089 1 34803000 53297 7256 35959 36765 61903 61903 0.06325509182340738 RMKELKCPV 9 Unmodified _RMKELKCPV_ 0 0 0 REV__ENSG00000104953|ENST00000246112|TLE6 REV__ENSG00000104953|ENST00000246112|TLE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3068237304688 2 552.306829 1102.59911 0.50374 0.00027822 -0.28102 -0.00015521 0.22273 0.00012301 552.3065036855234 95.116 0.31898 94.748 94.541 94.86 -0.36815 38 16 3 0 0 0 0.61256 1 51992 51992 0.6015 0 1 1138400 + 53298 18391 35960 36766 61904 61904 0.05191008998781399 RMKKKSKAI 9 Unmodified _RMKKKSKAI_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.851318359375 2 545.349886 1088.68522 1.4751 0.00080444 2.0877 0.0011385 3.5627 0.0019429 545.3506365878035 107.11 0.18027 100.93 100.83 101.01 -6.1757 47 35 2 0 0 0 0.21893 1 71628 71628 0.52476 0 1 3339200 + 53299 17583 35961 36767 61905 61905 0.1444233689583143 RMKLHLKKK 9 Unmodified _RMKLHLKKK_ 0 0 0 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 nc|ENSG00000169871|Q9BRZ2-2|TRIM56 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3872680664062 2 591.386803 1180.75905 NaN NaN NaN NaN NaN NaN NaN 104.34 1 104.29 103.79 104.79 -0.048737 0 0 0 0.85798 1 57928 57928 0.52476 0 1 53300 16374 35962 36768 61906 61906 0.17590305058138256 RMKRRRRWIQ 10 Unmodified _RMKRRRRWIQ_ 0 0 0 ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.4445190429688 2 743.444037 1484.87352 NaN NaN NaN NaN NaN NaN NaN 94.542 1 94.122 93.622 94.622 -0.42044 0 0 0 1.0061 1 51651 51651 0 0 1 53301 11195 35963 36769 61907 61907 0.15048007592804424 RMLEDRDLFVM 11 Unmodified _RMLEDRDLFVM_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.5727233886719 3 475.57234 1423.69519 1.1792 0.00056079 -0.98805 -0.00046989 0.19114 9.0901E-05 475.90604467010996 91.788 0.23035 85.613 85.509 85.74 -6.1757 18 12 2 0 0 0 0.33612 1 60678 60678 16.137 1.18 1 7641700 53302 2503 35964 36770 61908 61908 0.00029112048196111573 RMLHFLTAV 9 Unmodified _RMLHFLTAV_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3097534179688 2 544.307687 1086.60082 0.8857 0.00048209 1.0138 0.00055184 1.8995 0.0010339 544.3084072298951 94.971 0.27048 88.796 88.66 88.931 -6.1757 33 14 3 0 0 0 0.020973 1 62863 62863 62.573 34.086 1 19309000 53303 7770 35965 36771 61909 61909 0.06098386079042939 RMLHFLTAV 9 Unmodified _RMLHFLTAV_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2078857421875 3 363.20755 1086.60082 1.6514 0.00059978 -1.1818 -0.00042923 0.46959 0.00017056 363.2070542685675 94.958 0.21391 88.782 88.677 88.891 -6.1757 28 11 3 0 0 0 0.32871 1 62882 62882 26.268 17.523 1 12421000 53304 7770 35965 36771 61910 61910 0.06098386079042939 RMLPHAPGV 9 Oxidation (M) _RM(Oxidation (M))LPHAPGV_ RM(1)LPHAPGV RM(85)LPHAPGV 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2696533203125 2 497.268561 992.52257 0.27526 0.00013688 0.5382 0.00026763 0.81346 0.00040451 497.26872086051895 25.868 0.29982 25.851 25.608 25.908 -0.017006 29 17 2 0 0 0 0.0090851 1 13217 13217 85.357 54.72 1 39642000 53305 9847;3221 35966 36772 61911 61911 575 0.026009534938225443 RMLPHAPGV 9 Oxidation (M) _RM(Oxidation (M))LPHAPGV_ RM(1)LPHAPGV RM(48)LPHAPGV 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2699890136719 2 497.268561 992.52257 0.80571 0.00040065 -0.69979 -0.00034799 0.10592 5.2669E-05 497.26856382193404 28.966 0.59228 25.664 25.286 25.878 -3.3016 74 32 3 0 0 0 0.042911 2 16060 16060;16302 48.346 32.499 1 151310000 53306 9847;3221 35966 36772 61912;61913 61912 575 0.026009534938225443 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2717590332031 2 489.271104 976.527655 0.81698 0.00039972 0.093077 4.554E-05 0.91006 0.00044526 489.2712001340431 30.153 0.17897 30.073 29.999 30.178 -0.080431 10 6 2 0 0 0 0.5029 1 15686 15686 7.2892 4.0079 1 1396600 53307 9847;3221 35966 36773 61914 61914 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2715454101562 2 489.271104 976.527655 0.24138 0.0001181 0.74205 0.00036307 0.98343 0.00048117 489.2715569355763 29.851 0.15874 29.882 29.811 29.97 0.030106 10 5 2 0 0 0 0.095405 1 15621 15621 34.102 10.082 1 2067100 53308 9847;3221 35966 36773 61915 61915 0.03845257356431375 RMLPHAPGV 9 Unmodified _RMLPHAPGV_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2713012695312 2 489.271104 976.527655 0.77256 0.00037799 -0.45042 -0.00022038 0.32215 0.00015762 489.2710093900747 34.51 0.57502 30.415 30.16 30.735 -4.0951 123 33 5 0 0 0 0.023164 3 19824 19824;19937;20066 60.39 42.243 1 363360000 53309 9847;3221 35966 36773 61916;61917;61918 61916 0.03845257356431375 RMLRNRRAE 9 Unmodified _RMLRNRRAE_ 0 0 0 REV__ENSG00000198952|ENST00000361813|SMG5 REV__ENSG00000198952|ENST00000361813|SMG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2280578613281 3 401.228007 1200.66219 NaN NaN NaN NaN NaN NaN NaN 15.682 1 15.682 15.182 16.182 0 0 0 0 0.85798 1 7577 7577 0.23584 0 1 + 53310 24106 35967 36774 61919 61919 0.06988710831069511 RMLSRSFWAH 10 Unmodified _RMLSRSFWAH_ 0 0 0 ENST00000555846.1_1_14:55498629-55509730:+|nuORF ENST00000555846.1_1_14:55498629-55509730:+|nuORF ENST00000555846.1_1_14:55498629-55509730:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8887939453125 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 108.42 1 102.24 101.74 102.74 -6.1757 0 0 0 1.0019 1 72464 72464 0.15932 0 1 53311 15234 35968 36775 61920 61920 0.01190790225246019 RMLSRSFWAH 10 Unmodified _RMLSRSFWAH_ 0 0 0 ENST00000555846.1_1_14:55498629-55509730:+|nuORF ENST00000555846.1_1_14:55498629-55509730:+|nuORF ENST00000555846.1_1_14:55498629-55509730:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8887634277344 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 109.46 1 103.28 102.78 103.78 -6.1757 0 0 0 1.0019 1 73099 73099 0.15932 0 1 53312 15234 35968 36775 61921 61921 0.01190790225246019 RMLYAQDFLL 10 Unmodified _RMLYAQDFLL_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20221201_MKP_PDAC_01 4 635.33837890625 2 635.336641 1268.65873 NaN NaN NaN NaN NaN NaN NaN 24.414 1 21.587 21.087 22.087 -2.8273 0 0 0 0.98094 1 13291 13291 2.7352 1.2533 1 + 53313 19212 35969 36776 61922 61922 0.03514603213830014 RMMNCTLQ 8 Unmodified _RMMNCTLQ_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.4423217773438 1 996.442353 995.435077 -0.49498 -0.00049322 -0.34239 -0.00034117 -0.83737 -0.00083439 996.4420767095966 55.265 0.3848 55.265 55.005 55.389 0 41 16 3 0 0 0 0.6895 1 30597 30597 18.135 7.3111 1 10449000 53314 4534 35970 36777 61923 61923 -0.06282331763600268 RMMNCTLQ 8 Unmodified _RMMNCTLQ_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7247009277344 2 498.724815 995.435077 -0.09064 -4.5205E-05 -0.32935 -0.00016426 -0.41999 -0.00020946 498.7243629034495 55.244 0.33798 55.244 55.029 55.367 0 32 14 3 0 0 0 0.75262 1 30670 30670 12.532 3.1841 1 4130700 53315 4534 35970 36777 61924 61924 -0.06282331763600268 RMNALFVQF 9 Unmodified _RMNALFVQF_ 0 0 0 ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B ENSG00000243749|ENST00000373337|TMEM35B MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2977905273438 2 563.297319 1124.58008 1.3368 0.00075301 -0.50244 -0.00028302 0.83435 0.00046999 563.2967093302476 96.177 0.28915 90.002 89.833 90.122 -6.1757 28 17 2 0 0 0 0.047196 1 63698 63698 46.021 13.715 1 15412000 53316 10715 35971 36778 61925 61925 0.022777956993877524 RMNGAAVG 8 Unmodified _RMNGAAVG_ 0 0 0 REV__ENST00000600463.1_1_19:18288394-18288718:+|nuORF REV__ENST00000600463.1_1_19:18288394-18288718:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1967163085938 2 388.197605 774.380657 NaN NaN NaN NaN NaN NaN NaN 16.257 1 16.257 15.757 16.757 0 0 0 0 0.97444 1 7911 7911 0.69038 0 1 + 53317 29249 35972 36779 61926 61926 -0.015558395284983817 RMNIRTHRNQR 11 Unmodified _RMNIRTHRNQR_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|296|2|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|296|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.4000854492188 2 741.402567 1480.79058 NaN NaN NaN NaN NaN NaN NaN 82.966 1 82.966 82.466 83.466 0 0 0 0 0.94307 1 46018 46018 0.30703 0 1 + 53318 29375 35973 36780 61927 61927 0.06941646074142227 RMPEFYNRF 9 Oxidation (M) _RM(Oxidation (M))PEFYNRF_ RM(1)PEFYNRF RM(41)PEFYNRF 0 0 1 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.8687133789062 3 425.869485 1274.58663 -0.0037614 -1.6018E-06 -0.11398 -4.8542E-05 -0.11774 -5.0144E-05 425.8695170928957 38.558 0.22806 38.271 38.114 38.342 -0.28687 27 10 4 0 0 0 0.067618 1 20282 20282 40.725 33.296 1 10365000 53319 4242 35974 36781 61928 61928 751 -0.03968311139897196 RMPEFYNRF 9 Oxidation (M) _RM(Oxidation (M))PEFYNRF_ RM(1)PEFYNRF RM(41)PEFYNRF 0 0 1 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.8678283691406 3 425.869485 1274.58663 0.084189 3.5854E-05 -0.52081 -0.0002218 -0.43662 -0.00018594 425.8692318787582 38.144 0.24339 38.161 38.048 38.291 0.01704 30 10 4 0 0 0 0.067618 1 20268 20268 40.725 30.197 1 10019000 53320 4242 35974 36781 61929 61929 751 -0.03968311139897196 RMPEFYNRF 9 Oxidation (M) _RM(Oxidation (M))PEFYNRF_ RM(1)PEFYNRF RM(48)PEFYNRF 0 0 1 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.8687438964844 3 425.869485 1274.58663 0.16951 7.2188E-05 -1.0441 -0.00044465 -0.8746 -0.00037247 425.8690216422914 38.562 0.22983 38.577 38.433 38.663 0.015549 26 10 3 0 0 0 0.044042 1 20481 20481 47.732 33.561 1 10577000 53321 4242 35974 36781 61930 61930 751 -0.03968311139897196 RMPEFYNRF 9 Oxidation (M) _RM(Oxidation (M))PEFYNRF_ RM(1)PEFYNRF RM(55)PEFYNRF 0 0 1 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.86962890625 3 425.869485 1274.58663 0.92712 0.00039483 -1.6145 -0.00068756 -0.68737 -0.00029273 425.8690535013805 42.231 0.32347 37.547 37.423 37.747 -4.6846 60 20 4 0 0 0 0.030186 2 25456 25456;25596 55.249 48.625 1 24205000 53322 4242 35974 36781 61931;61932 61931 751 -0.03968311139897196 RMPEFYNRF 9 Oxidation (M) _RM(Oxidation (M))PEFYNRF_ RM(1)PEFYNRF RM(53)PEFYNRF 0 0 1 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.8699035644531 3 425.869485 1274.58663 1.2942 0.00055115 -0.52329 -0.00022285 0.77089 0.0003283 425.86922712224737 42.677 0.39671 37.993 37.779 38.176 -4.6846 65 26 4 0 0 0 0.033747 1 25725 25725 53.317 42.251 1 31378000 53323 4242 35974 36781 61933 61933 751 -0.03968311139897196 RMPEFYNRF 9 Unmodified _RMPEFYNRF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8052978515625 2 630.303133 1258.59171 0.68892 0.00043423 0.35688 0.00022494 1.0458 0.00065917 630.8048753764338 47.552 0.40395 47.513 47.197 47.6 -0.038643 30 18 3 0 0 0 0.058763 1 25608 25608 45.74 18.111 1 3315500 53324 4242 35974 36782 61934 61934 -0.02724007277288365 RMPEFYNRF 9 Unmodified _RMPEFYNRF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.5384521484375 3 420.537847 1258.59171 0.58009 0.00024395 1.655 0.00069597 2.2351 0.00093992 420.5377089435698 47.531 0.26155 47.492 47.319 47.581 -0.038643 25 11 3 0 0 0 0.047714 1 25626 25626 45.74 37.794 1 4153100 53325 4242 35974 36782 61935 61935 -0.02724007277288365 RMPEFYNRF 9 Unmodified _RMPEFYNRF_ 0 0 0 ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF ENSG00000130707|ENST00000352480|ASS1 ENSG00000130707|ENST00000352480|ASS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5381469726562 3 420.537847 1258.59171 1.1463 0.00048207 0.035159 1.4786E-05 1.1815 0.00049686 420.53782148212684 52.526 0.32714 46.792 46.598 46.925 -5.7345 28 17 2 0 0 0 0.0081 1 33106 33106 93.938 84.962 1 32882000 53326 4242 35974 36782 61936 61936 -0.02724007277288365 RMQDFWSLLT 10 Unmodified _RMQDFWSLLT_ 0 0 0 nc|ENSG00000291153|Q8TBR4|STAG3L4;ENST00000416602.6_1_7:66770983-66785095:+|nuORF nc|ENSG00000291153|Q8TBR4|STAG3L4 nc|ENSG00000291153|Q8TBR4|STAG3L4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8850708007812 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 70.37 1 70.406 69.906 70.906 0.035515 0 0 0 0.9997 1 38732 38732 0.69767 0 1 53327 13049 35975 36783 61937 61937 -0.002748713086020871 RMQDFWSLLT 10 Unmodified _RMQDFWSLLT_ 0 0 0 nc|ENSG00000291153|Q8TBR4|STAG3L4;ENST00000416602.6_1_7:66770983-66785095:+|nuORF nc|ENSG00000291153|Q8TBR4|STAG3L4 nc|ENSG00000291153|Q8TBR4|STAG3L4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8848876953125 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 72.692 1 72.733 72.233 73.233 0.041725 0 0 0 0.9997 1 40032 40032 0.69767 0 1 53328 13049 35975 36783 61938 61938 -0.002748713086020871 RMQDFWSLLT 10 Unmodified _RMQDFWSLLT_ 0 0 0 nc|ENSG00000291153|Q8TBR4|STAG3L4;ENST00000416602.6_1_7:66770983-66785095:+|nuORF nc|ENSG00000291153|Q8TBR4|STAG3L4 nc|ENSG00000291153|Q8TBR4|STAG3L4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8847961425781 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 104.49 1 104.44 103.94 104.94 -0.048737 0 0 0 0.9997 1 58014 58014 0.69767 0 1 53329 13049 35975 36783 61939 61939 -0.002748713086020871 RMQEIEERLS 10 Unmodified _RMQEIEERLS_ 0 0 0 REV__nc|ENSG00000204248|P13942-8|COL11A2 REV__nc|ENSG00000204248|P13942-8|COL11A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8884582519531 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 36.446 1 36.468 35.968 36.968 0.021545 0 0 0 0.8671 1 19310 19310 8.4443 0 1 + 53330 24149 35976 36784 61940 61940 0.006550218521169882 RMRKRIMWRRY 11 Unmodified _RMRKRIMWRRY_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.46630859375 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 54.71 1 54.71 54.21 55.21 0 0 0 0 0.9435 1 30377 30377 0 0 1 + 53331 17400 35977 36785 61941 61941 0.11933490063688623 RMRKRIMWRRY 11 Unmodified _RMRKRIMWRRY_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.4691772460938 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 65.444 1 65.444 64.944 65.944 0 0 0 0 0.9435 1 36503 36503 0 0 1 + 53332 17400 35977 36785 61942 61942 0.11933490063688623 RMRKRIMWRRY 11 Unmodified _RMRKRIMWRRY_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4691162109375 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 26.879 1 26.908 26.408 27.408 0.028664 0 0 0 0.9435 1 13955 13955 0 0 1 + 53333 17400 35977 36785 61943 61943 0.11933490063688623 RMRKRIMWRRY 11 Unmodified _RMRKRIMWRRY_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4669799804688 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 94.032 1 94.046 93.546 94.546 0.014244 0 0 0 0.9435 1 52266 52266 0 0 1 + 53334 17400 35977 36785 61944 61944 0.11933490063688623 RMRKRIMWRRY 11 Unmodified _RMRKRIMWRRY_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20221201_MKP_PDAC_01 4 826.4695434570312 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 62.67 1 56.494 55.994 56.994 -6.1757 0 0 0 0.94307 1 40453 40453 0.30703 0.30703 1 + 53335 17400 35977 36785 61945 61945 0.11933490063688623 RMRKRLKPLRR 11 Unmodified _RMRKRLKPLRR_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MSMS AL20221201_MKP_PDAC_01 4 503.9966735839844 3 503.996417 1508.96742 NaN NaN NaN NaN NaN NaN NaN 103.92 1 97.745 97.245 98.245 -6.1757 0 0 0 0.94337 1 69634 69634 0.094841 0.011491 1 + 53336 18791 35978 36786 61946 61946 0.23329726695078534 RMRQNLTY 8 Unmodified _RMRQNLTY_ 0 0 0 ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2758178710938 2 541.2822 1080.54985 0.4391 0.00023767 -1.0363 -0.00056091 -0.59716 -0.00032323 541.281235088956 46.711 0.48828 46.711 46.369 46.858 0 49 22 3 0 0 0 0.68937 1 25422 25422 23.148 0 1 2136000 53337 9707 35979 36787 61947 61947 0.012794370342135153 RMSDLTPVHF 10 Unmodified _RMSDLTPVHF_ 0 0 0 ENSG00000142546|ENST00000596358|NOSIP;ENST00000596477.1_1_19:50059010-50060533:-|nuORF ENSG00000142546|ENST00000596358|NOSIP ENSG00000142546|ENST00000596358|NOSIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5365295410156 3 401.537736 1201.59138 -0.16159 -6.4886E-05 -1.6958 -0.00068093 -1.8574 -0.00074581 401.53690737303197 21.923 0.20047 21.946 21.851 22.052 0.022896 13 8 2 0 0 0 0.68719 1 11147 11147 2.086 0.89267 1 929860 53338 5426 35980 36788 61948 61948 -0.001354269971670874 RMTVEFSKEI 10 Unmodified _RMTVEFSKEI_ 0 0 0 REV__ENSG00000165899|ENST00000547103|OTOGL REV__ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8209228515625 2 620.323731 1238.63291 -0.18656 -0.00011573 4.3467 0.0026963 4.1601 0.0025806 620.3275047249798 30.815 0.56797 30.815 30.503 31.071 0 76 27 4 0 0 0 0.35903 1 16099 16099 24.021 1.2843 1 12078000 + 53339 22060 35981 36789 61949 61949 0.02313708971541928 RMTWWKLIT 9 Unmodified _RMTWWKLIT_ 0 0 0 REV__ENST00000243077.7_1_12:57548395-57549877:+|nuORF REV__ENST00000243077.7_1_12:57548395-57549877:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2078857421875 3 412.230355 1233.66923 NaN NaN NaN NaN NaN NaN NaN 22.478 1 22.501 22.001 23.001 0.022896 0 0 0 0.86004 1 11436 11436 0.26902 0 1 + 53340 24849 35982 36790 61950 61950 0.06174630658915703 RMVFLFSLF 9 Unmodified _RMVFLFSLF_ 0 0 0 ENST00000592570.1_1_19:55915371-55915470:-|nuORF ENST00000592570.1_1_19:55915371-55915470:-|nuORF ENST00000592570.1_1_19:55915371-55915470:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8809204101562 3 387.215934 1158.62597 0.16902 6.5447E-05 -2.8398 -0.0010996 -2.6708 -0.0010342 387.54986218505366 39.152 0.19596 39.163 39.021 39.217 0.011452 11 8 2 0 0 0 0.21493 1 20837 20837 2.4985 0.59211 1 1168100 53341 15722 35983 36791 61951 61951 0.05300440881615032 RMVYHSPP 8 Unmodified _RMVYHSPP_ 0 0 0 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7481689453125 2 493.747462 985.480371 0.58318 0.00028794 -0.0026335 -1.3003E-06 0.58055 0.00028664 493.7474444571394 94.738 0.23405 94.317 94.213 94.447 -0.42043 15 10 2 0 0 0 0.80992 1 51763 51763 0.69038 0 1 267550 53342 6095 35984 36792 61952 61952 -0.012950219145523079 RMWKLQSFRQF 11 Unmodified _RMWKLQSFRQF_ 0 0 0 ENST00000474018.1_1_6:170089229-170089316:-|nuORF ENST00000474018.1_1_6:170089229-170089316:-|nuORF ENST00000474018.1_1_6:170089229-170089316:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 763.9080810546875 2 763.906088 1525.79762 NaN NaN NaN NaN NaN NaN NaN 98.086 1 91.911 91.411 92.411 -6.1757 0 0 0 0.79635 1 65023 65023 12.241 4.6317 1 53343 13928 35985 36793 61953 61953 0.055755659019951054 RMWTRRWPRCR 11 Unmodified _RMWTRRWPRCR_ 0 0 0 ENST00000543741.6_1_14:24424287-24424359:+|nuORF ENST00000543741.6_1_14:24424287-24424359:+|nuORF ENST00000543741.6_1_14:24424287-24424359:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.4200439453125 2 802.419705 1602.82486 NaN NaN NaN NaN NaN NaN NaN 38.931 1 38.931 38.431 39.431 0 0 0 0 0.9435 1 20828 20828 0 0 1 53344 15075 35986 36794 61954 61954 0.0475577096140114 RMYEPDDE 8 Unmodified _RMYEPDDE_ 0 0 0 REV__nc|ENSG00000075340|P35612-7|ADD2 REV__nc|ENSG00000075340|P35612-7|ADD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7101440429688 2 527.710939 1053.40732 NaN NaN NaN NaN NaN NaN NaN 7.552 1 7.5673 7.0673 8.0673 0.015238 0 0 0 0.97444 1 3768 3768 0.69038 0 1 + 53345 17568 35987 36795 61955 61955 -0.11724240218495652 RMYLEYRI 8 Unmodified _RMYLEYRI_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.871337890625 3 381.870826 1142.59065 0.97962 0.00037409 0.33928 0.00012956 1.3189 0.00050365 381.87086285772307 41.19 0.27015 36.582 36.484 36.754 -4.6079 28 16 2 0 0 0 0.79669 1 24792 24792 10.074 4.3421 1 14795000 + 53346 17207 35988 36796 61956 61956 0.02505778353815913 RNALLTAPI 9 Unmodified _RNALLTAPI_ 0 0 0 ENSG00000180934|ENST00000641900|OR56A1;nc|ENSG00000180934|Q8NGH5|OR56A1 ENSG00000180934|ENST00000641900|OR56A1 ENSG00000180934|ENST00000641900|OR56A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7987670898438 2 484.798009 967.581465 NaN NaN NaN NaN NaN NaN NaN 28.11 1 28.139 27.639 28.639 0.029564 0 0 0 0.20153 1 14625 14625 30.637 0 1 53347 8936 35989 36797 61957 61957 0.09637753059791976 RNAPASVHPA 10 Unmodified _RNAPASVHPA_ 0 0 0 REV__ENST00000270190.8_2_21:37529109-37537056:+|nuORF REV__ENST00000270190.8_2_21:37529109-37537056:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2705383300781 2 510.27269 1018.53083 NaN NaN NaN NaN NaN NaN NaN 91.655 1 91.655 91.155 92.155 0 0 0 0 0.99248 1 50687 50687 1.4819 0.68827 1 + 53348 25132 35990 36798 61958 61958 0.022302237347958 RNCTVEMPI 9 Unmodified _RNCTVEMPI_ 0 0 0 ENST00000585629.1_1_18:58330357-58331131:+|nuORF ENST00000585629.1_1_18:58330357-58331131:+|nuORF ENST00000585629.1_1_18:58330357-58331131:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7577514648438 2 531.757169 1061.49979 NaN NaN NaN NaN NaN NaN NaN 80.368 1 80.368 79.868 80.868 0 0 0 0 0.84737 1 44625 44625 1.8442 0 1 53349 15612 35991 36799 61959 61959 -0.02850433685966891 RNEEPVPPPQC 11 Unmodified _RNEEPVPPPQC_ 0 0 0 REV__ENST00000531585.1_1_11:126862365-126865054:+|nuORF REV__ENST00000531585.1_1_11:126862365-126865054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.3014526367188 2 633.300787 1264.58702 0.28246 0.00017888 0.0012997 8.2309E-07 0.28376 0.00017971 633.3000295790671 67.863 0.54073 67.381 67.053 67.594 -0.48218 47 24 3 0 0 0 0.67892 1 37090 37090 4.5289 0 1 1387400 + 53350 28450 35992 36800 61960 61960 -0.03468936210697393 RNEIYILFN 9 Unmodified _RNEIYILFN_ 0 0 0 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3194580078125 2 591.319306 1180.62406 0.028807 1.7034E-05 0.56368 0.00033331 0.59248 0.00035035 591.3195659383487 77.253 0.33359 77.304 77.108 77.441 0.05011 41 13 4 0 0 0 0.29507 1 42685 42685 24.021 0 1 13526000 53351 1613 35993 36801 61961 61961 0.040971033973846716 RNEIYILFN 9 Unmodified _RNEIYILFN_ 0 0 0 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 591.319306 1180.62406 -0.80977 -0.00047883 1.4008 0.00082834 0.59106 0.00034951 591.3203451910105 77.783 0.14594 77.301 77.166 77.312 -0.4826 -0.0013237 0.00095663 NaN 24.021 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 515860 53352 1613 35993 36801 0.040971033973846716 RNELRKKRIKR 11 Unmodified _RNELRKKRIKR_ 0 0 0 REV__ENSG00000118298|ENST00000369111|CA14 REV__ENSG00000118298|ENST00000369111|CA14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.3267517089844 3 499.658459 1495.95355 1.6904 0.00084462 -1.5543 -0.00077664 0.13604 6.7974E-05 499.657645536211 103.75 0.035858 97.571 97.558 97.594 -6.1757 9 6 2 0 0 0 0.30604 1 69534 69534 0.094841 0.094841 1 2133200 + 53353 19144 35994 36802 61962 61962 0.22540772467641546 RNEQRLRRLLQ 11 Unmodified _RNEQRLRRLLQ_ 0 0 0 REV__AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|3|1|sense REV__AluSc_dup13832|chr7:33006087-33006413:-|2.283459738353371|0.4159080058002372|2.46|179.0|3|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.6326293945312 3 494.630569 1480.86988 1.0082 0.0004987 1.9512 0.00096511 2.9594 0.0014638 494.63163141612307 64.423 0.25005 64.413 64.298 64.548 -0.010536 23 12 3 0 0 0 0.73349 1 35298 35298 1.1098 0 1 4002700 + 53354 16713 35995 36803 61963 61963 0.1486761629994362 RNERMFEGF 9 Unmodified _RNERMFEGF_ 0 0 0 REV__nc|ENSG00000064102|Q9NVM9-2|INTS13 REV__nc|ENSG00000064102|Q9NVM9-2|INTS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.2776489257812 2 593.277115 1184.53968 0.5025 0.00029812 0.36611 0.00021721 0.86861 0.00051533 593.2775099424423 89.463 0.32692 88.961 88.8 89.127 -0.50172 23 13 2 0 0 0 0.58466 1 48920 48920 2.3027 0 1 478520 + 53355 17349 35996 36804 61964 61964 -0.04521170691032239 RNESTQSVSP 10 Unmodified _RNESTQSVSP_ 0 0 0 REV__ENSG00000196074|ENST00000357552|SYCP2 REV__ENSG00000196074|ENST00000357552|SYCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8479919433594 3 368.847515 1103.52072 1.1264 0.00041547 -0.27068 -9.9839E-05 0.85571 0.00031563 368.8475289745727 46.663 4.5088 41.583 41.23 45.739 -5.0805 1495 352 6 0 0 0 0.6067 3 28916 28916;29833;30095 9.7643 0 1 23053000000 + 53356 23783 35997 36805 61965;61966;61967 61965 -0.026904287811021277 RNFCDGRRCQN 11 Unmodified _RNFCDGRRCQN_ 0 0 0 nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 nc|ENSG00000075275|Q9NYQ6|CELSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.8720092773438 3 456.871783 1367.59352 0.31956 0.000146 -0.71194 -0.00032526 -0.39238 -0.00017927 456.87185080552047 24.586 0.32995 21.703 21.541 21.871 -2.8831 59 17 5 0 0 0 0.66428 1 13448 13448 3.8459 0 1 9355700 53357 1149 35998 36806 61968 61968 -0.07557321530953232 RNGQLILRRLK 11 Unmodified _RNGQLILRRLK_ 0 0 0 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2982177734375 3 456.296638 1365.86809 NaN NaN NaN NaN NaN NaN NaN 102.96 1 102.86 102.36 103.36 -0.10458 0 0 0 0.94338 1 56166 56166 0.08335 0.08335 1 + 53358 20396 35999 36807 61969 61969 0.19978607281973382 RNGQLILRRLK 11 Unmodified _RNGQLILRRLK_ 0 0 0 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2991943359375 3 456.296638 1365.86809 NaN NaN NaN NaN NaN NaN NaN 103.22 1 103.12 102.62 103.62 -0.10458 0 0 0 0.94338 1 56304 56304 0.08335 0.08335 1 + 53359 20396 35999 36807 61970 61970 0.19978607281973382 RNGQLILRRLK 11 Unmodified _RNGQLILRRLK_ 0 0 0 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2978210449219 3 456.296638 1365.86809 NaN NaN NaN NaN NaN NaN NaN 103.58 1 103.48 102.98 103.98 -0.10458 0 0 0 0.94338 1 56499 56499 0.08335 0.08335 1 + 53360 20396 35999 36807 61971 61971 0.19978607281973382 RNHERRHADER 11 Unmodified _RNHERRHADER_ 0 0 0 nc|ENSG00000174652|Q14584|ZNF266;ENSG00000174652|ENST00000592904|ZNF266 nc|ENSG00000174652|Q14584|ZNF266 nc|ENSG00000174652|Q14584|ZNF266 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.9168395996094 3 492.582277 1474.725 0.32413 0.00015966 -0.85129 -0.00041933 -0.52716 -0.00025967 492.58193716110964 17.529 0.20746 17.534 17.43 17.638 0.0050564 57 17 4 0 0 0 0.7326 1 8823 8823 0.40827 0.041592 1 7473800 53361 8445 36000 36808 61972 61972 0.006629481527852477 RNHQSMWRDDG 11 Unmodified _RNHQSMWRDDG_ 0 0 0 REV__nc|ENSG00000168092|P68402-3|PAFAH1B2 REV__nc|ENSG00000168092|P68402-3|PAFAH1B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.8733825683594 3 467.87407 1400.60038 NaN NaN NaN NaN NaN NaN NaN 21.99 1 21.99 21.49 22.49 0 0 0 0 0.94184 1 11169 11169 0.40827 0 1 + 53362 22289 36001 36809 61973 61973 -0.0838968537875644 RNHYRRYPRRR 11 Unmodified _RNHYRRYPRRR_ 0 0 0 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 ENSG00000065978|ENST00000321358|YBX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 815.4549560546875 2 815.456522 1628.89849 NaN NaN NaN NaN NaN NaN NaN 96.045 1 96.049 95.549 96.549 0.004158 0 0 0 0.9435 1 53350 53350 0 0 1 53363 921 36002 36810 61974 61974 0.10919778719699025 RNIFWRKRKHY 11 Unmodified _RNIFWRKRKHY_ 0 0 0 ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENST00000583028.1_1_17:62175367-62207458:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.4583129882812 2 802.457668 1602.90078 NaN NaN NaN NaN NaN NaN NaN 47.596 1 47.596 47.096 48.096 0 0 0 0 0.94301 1 26064 26064 0.35063 0.081612 1 53364 15581 36003 36811 61975 61975 0.12344814404832505 RNISRAWLSL 10 Unmodified _RNISRAWLSL_ 0 0 0 REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF REV__ENST00000255189.7_1_5:78326753-78329103:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.9018249511719 3 405.903406 1214.68839 -0.3999 -0.00016232 -2.5047 -0.0010167 -2.9046 -0.001179 405.9022434222247 32.148 0.10791 32.178 32.108 32.216 0.029747 6 4 2 0 0 0 0.69626 1 16888 16888 3.3196 0.88486 1 1567900 + 53365 24911 36004 36812 61976 61976 0.08963303274185819 RNKDRFEVF 9 Unmodified _RNKDRFEVF_ 0 0 0 REV__nc|ENSG00000128595|O43852-15|CALU REV__nc|ENSG00000128595|O43852-15|CALU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2159729003906 3 404.215761 1209.62546 -0.23157 -9.3606E-05 1.1486 0.00046428 0.91702 0.00037067 404.2161537992518 33.564 0.33001 33.405 33.223 33.553 -0.15918 44 13 4 0 0 0 0.43463 1 17576 17576 7.1017 2.3858 1 11079000 + 53366 19621 36005 36813 61977 61977 0.029027374861243516 RNKKKKRKL 9 Unmodified _RNKKKKRKL_ 0 0 0 nc|ENSG00000147655|Q6UXX9-2|RSPO2;nc|ENSG00000147655|Q6UXX9-3|RSPO2;ENSG00000147655|ENST00000276659|RSPO2 nc|ENSG00000147655|Q6UXX9-2|RSPO2 nc|ENSG00000147655|Q6UXX9-2|RSPO2 MSMS AL20221201_MKP_PDAC_01 4 400.2800598144531 3 400.278808 1197.81459 NaN NaN NaN NaN NaN NaN NaN 110 1 103.82 103.32 104.32 -6.178 0 0 0 0.86031 1 73433 73433 0.23584 0 1 53367 5873 36006 36814 61978 61978 0.22359854570117932 RNKQKLIAT 9 Unmodified _RNKQKLIAT_ 0 0 0 REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF REV__ENST00000493886.5_1_9:35062192-35072350:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3377075195312 2 536.33529 1070.65603 1.4855 0.0007967 1.6659 0.00089349 3.1514 0.0016902 536.3355198153805 108.33 0.28678 102.16 101.99 102.28 -6.1757 89 59 2 0 0 0 0.61855 1 72380 72380 0.52476 0 1 3844000 + 53368 21999 36007 36815 61979 61979 0.12352515871180003 RNKWYLWRKKW 11 Unmodified _RNKWYLWRKKW_ 0 0 0 REV__nc|ENSG00000198836|O60313-13|OPA1 REV__nc|ENSG00000198836|O60313-13|OPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 832.468505859375 2 832.470244 1662.92593 NaN NaN NaN NaN NaN NaN NaN 47.244 1 47.244 46.744 47.744 0 0 0 0 0.94307 1 25859 25859 0.30703 0.30703 1 + 53369 24072 36008 36816 61980 61980 0.12098869207352436 RNKWYLWRKKW 11 Unmodified _RNKWYLWRKKW_ 0 0 0 REV__nc|ENSG00000198836|O60313-13|OPA1 REV__nc|ENSG00000198836|O60313-13|OPA1 MSMS AL20221201_MKP_PDAC_01 4 832.46630859375 2 832.470244 1662.92593 NaN NaN NaN NaN NaN NaN NaN 48.932 1 43.536 43.036 44.036 -5.3961 0 0 0 0.9435 1 30516 30516 0 0 1 + 53370 24072 36008 36816 61981 61981 0.12098869207352436 RNKYEDEINK 10 Unmodified _RNKYEDEINK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.2242126464844 3 436.889603 1307.64698 -0.58365 -0.00025499 2.0144 0.00088008 1.4308 0.00062509 437.22445116444567 16.716 0.074657 16.717 16.658 16.733 0.0010548 31 20 2 0 0 0 0.65773 2 8248 8248;8252 5.0475 3.3052 1 943940 + 53371 7667 36009 36817 61982;61983 61982 0.005460777241751202 RNKYEDEINKR 11 Unmodified _RNKYEDEINKR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.9442138671875 4 366.944299 1463.74809 -0.60318 -0.00022133 0.79849 0.000293 0.19531 7.1668E-05 366.9445573938401 15.701 0.10223 15.701 15.65 15.753 0 53 25 3 0 0 0 0.65706 1 7585 7585 8.2864 3.8803 1 1281900 + 53372 7667 36010 36818 61984 61984 0.03476529426870911 RNKYEDEINKR 11 Unmodified _RNKYEDEINKR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.9436950683594 4 366.944299 1463.74809 -0.57025 -0.00020925 0.84741 0.00031095 0.27716 0.0001017 366.94463472947655 16.339 0.13487 16.34 16.268 16.403 0.0010529 109 41 3 0 0 0 0.70147 1 8033 8033 4.1166 2.9018 1 3016900 + 53373 7667 36010 36818 61985 61985 0.03476529426870911 RNKYEDEINKR 11 Unmodified _RNKYEDEINKR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.92431640625 3 488.923306 1463.74809 NaN NaN NaN NaN NaN NaN NaN 16.365 1 16.366 15.866 16.866 0.0010548 0 0 0 0.94196 1 8066 8066 1.1098 0.70149 1 + 53374 7667 36010 36818 61986 61986 0.03476529426870911 RNKYEDEINKR 11 Unmodified _RNKYEDEINKR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.9440002441406 4 366.944299 1463.74809 -0.012435 -4.563E-06 1.2704 0.00046617 1.258 0.00046161 366.9447249425643 15.875 0.129 15.88 15.814 15.943 0.0050564 22 9 3 0 0 0 0.71728 1 7931 7931 2.6312 1.4164 1 807890 + 53375 7667 36010 36818 61987 61987 0.03476529426870911 RNLCDPHR 8 Unmodified _RNLCDPHR_ 0 0 0 ENSG00000164867|ENST00000297494|NOS3;nc|ENSG00000164867|P29474-3|NOS3;nc|ENSG00000164867|P29474-2|NOS3 ENSG00000164867|ENST00000297494|NOS3 ENSG00000164867|ENST00000297494|NOS3 MSMS AL20221201_MKP_PDAC_01 4 505.749267578125 2 505.751067 1009.48758 NaN NaN NaN NaN NaN NaN NaN 20.061 1 17.405 16.905 17.905 -2.6564 0 0 0 0.95973 1 10668 10668 8.5933 0.68312 1 53376 7254 36011 36819 61988 61988 -0.016782893141339628 RNLEKYSRN 9 Unmodified _RNLEKYSRN_ 0 0 0 ENST00000394961.6_1_4:95170895-95171954:+|nuORF ENST00000394961.6_1_4:95170895-95171954:+|nuORF ENST00000394961.6_1_4:95170895-95171954:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 393.8784484863281 3 393.879149 1178.61562 NaN NaN NaN NaN NaN NaN NaN 29.974 1 26.672 26.172 27.172 -3.3016 0 0 0 0.45218 1 16888 16888 17.443 6.5437 1 53377 12750 36012 36820 61989 61989 0.03345549480764021 RNLLKEFKV 9 Unmodified _RNLLKEFKV_ 0 0 0 ENST00000336838.10_1_2:55591129-55601970:-|nuORF ENST00000336838.10_1_2:55591129-55601970:-|nuORF ENST00000336838.10_1_2:55591129-55601970:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.9046936035156 3 382.904636 1145.69208 0.55123 0.00021107 -0.57434 -0.00021992 -0.023108 -8.8481E-06 382.9045642216875 58.598 0.28522 58.537 58.394 58.679 -0.060722 29 14 3 0 0 0 0.34134 1 31895 31895 15.248 3.0737 1 9165000 53378 11916 36013 36821 61990 61990 0.1250597304801886 RNLSWDPIKY 10 Unmodified _RNLSWDPIKY_ 0 0 0 REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 646.3406372070312 2 646.343312 1290.67207 NaN NaN NaN NaN NaN NaN NaN 19.417 1 16.761 16.261 17.261 -2.6564 0 0 0 0.99008 1 10283 10283 0.35063 0 1 + 53379 26670 36014 36822 61991 61991 0.03836177317407419 RNLTILDLSNN 11 Unmodified _RNLTILDLSNN_ 0 0 0 ENSG00000164342|ENST00000296795|TLR3;nc|ENSG00000164342|O15455-2|TLR3 ENSG00000164342|ENST00000296795|TLR3 ENSG00000164342|ENST00000296795|TLR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8509521484375 2 636.848958 1271.68336 NaN NaN NaN NaN NaN NaN NaN 87.703 1 87.199 86.699 87.699 -0.50423 0 0 0 0.94216 1 47973 47973 0.96228 0.50394 1 53380 7184 36015 36823 61992 61992 0.05838954620912773 RNMCNALFH 9 Unmodified _RNMCNALFH_ 0 0 0 REV__ENSG00000122376|ENST00000298786|SHLD2 REV__ENSG00000122376|ENST00000298786|SHLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.506591796875 3 369.172511 1104.4957 0.62193 0.0002296 -1.1491 -0.00042422 -0.52718 -0.00019462 369.17204227324726 29.437 0.2677 29.356 29.258 29.525 -0.080431 26 16 2 0 0 0 0.58466 1 15226 15226 1.1933 0.41681 1 24049000 + 53381 19340 36016 36824 61993 61993 -0.05236478389019794 RNMFCFTQK 9 Unmodified _RNMFCFTQK_ 0 0 0 REV__ENST00000513842.1_1_4:7765494-7800689:-|nuORF REV__ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.1871337890625 3 392.188049 1173.54232 0.38043 0.0001492 -1.7724 -0.00069511 -1.3919 -0.00054591 392.1873457305091 26.072 0.38736 23.121 22.894 23.281 -2.9511 31 24 2 0 0 0 0.55144 1 14342 14342 2.4985 0 1 11302000 + 53382 23838 36017 36825 61994 61994 -0.03751038557720676 RNMFEFQM 8 Unmodified _RNMFEFQM_ 0 0 0 ENST00000548219.5_2_21:30566458-30693553:+|nuORF ENST00000548219.5_2_21:30566458-30693553:+|nuORF ENST00000548219.5_2_21:30566458-30693553:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1633911132812 3 368.165133 1101.47357 NaN NaN NaN NaN NaN NaN NaN 60.612 1 60.612 60.112 61.112 0 0 0 0 0.97444 1 33802 33802 1.6526 0.45928 1 53383 15135 36018 36826 61995 61995 -0.07310702857421347 RNMKSIETKT 10 Unmodified _RNMKSIETKT_ 0 0 0 REV__ENST00000556193.2_1_14:44010398-44010665:-|nuORF REV__ENST00000556193.2_1_14:44010398-44010665:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.326416015625 2 604.326805 1206.63906 NaN NaN NaN NaN NaN NaN NaN 91.511 1 91.029 90.529 91.529 -0.48174 0 0 0 0.99091 1 50019 50019 1.6526 0 1 + 53384 26650 36019 36827 61996 61996 0.044002272030411405 RNMLRKLV 8 Unmodified _RNMLRKLV_ 0 0 0 REV__ENSG00000120875|ENST00000240100|DUSP4 REV__ENSG00000120875|ENST00000240100|DUSP4 MSMS AL20221201_MKP_PDAC_01 4 515.3228759765625 2 515.321128 1028.6277 NaN NaN NaN NaN NaN NaN NaN 104.53 1 98.354 97.854 98.854 -6.1757 0 0 0 0.97444 1 69998 69998 5.2307 0 1 + 53385 19267 36020 36828 61997 61997 0.114534946902495 RNMVVLWIPE 10 Unmodified _RNMVVLWIPE_ 0 0 0 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.8425903320312 2 628.844633 1255.67471 0.19506 0.00012267 -2.447 -0.0015388 -2.2519 -0.0014161 628.8425551962471 80.467 0.18792 80.467 80.38 80.568 0 10 8 2 0 0 0 0.69377 1 44690 44690 3.5965 0.31518 1 259760 53386 6534 36021 36829 61998 61998 0.05710309450751083 RNNPDTIKF 9 Unmodified _RNNPDTIKF_ 0 0 0 REV__ENSG00000090402|ENST00000264382|SI REV__ENSG00000090402|ENST00000264382|SI MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.28662109375 2 552.793455 1103.57236 1.0411 0.00057549 -3.5894 -0.0019842 -2.5483 -0.0014087 552.7952545280042 54.435 0.63281 48.57 48.266 48.899 -5.8653 129 38 5 0 0 0 0.21643 1 34729 34729 21.537 2.28 1 167170000 + 53387 17857 36022 36830 61999 61999 0.024713597034633494 RNNSRVTI 8 Unmodified _RNNSRVTI_ 0 0 0 REV__ENSG00000132383|ENST00000254719|RPA1 REV__ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7738342285156 2 480.27269 958.530826 1.5303 0.00073498 0.37661 0.00018088 1.9069 0.00091585 480.27284053055763 79.413 0.76647 73.237 72.911 73.677 -6.1757 109 44 3 0 0 0 0.63229 1 52130 52130 23.148 23.148 1 65473000 + 53388 19849 36023 36831 62000 62000 0.049902237348078415 RNNYRHYF 8 Unmodified _RNNYRHYF_ 0 0 0 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2797241210938 2 585.283589 1168.55262 0.34391 0.00020129 -1.0828 -0.00063376 -0.73891 -0.00043247 585.7840303867978 90.242 0.64851 89.74 89.257 89.905 -0.50171 75 32 4 0 0 0 0.80143 1 49119 49119 5.7604 0 1 1042000 53389 8190 36024 36832 62001 62001 -0.024909715166359092 RNPGEAQEEAF 11 Unmodified _RNPGEAQEEAF_ 0 0 0 REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2894287109375 2 624.286191 1246.55783 NaN NaN NaN NaN NaN NaN NaN 72.735 1 72.735 72.235 73.235 0 0 0 0 0.82644 1 40499 40499 10.8 4.0763 1 + 53390 22932 36025 36833 62002 62002 -0.05558757235326084 RNPGEAQEEAF 11 Unmodified _RNPGEAQEEAF_ 0 0 0 REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF REV__ENST00000563748.5_1_15:34651330-34651973:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.2855834960938 2 624.286191 1246.55783 0.59511 0.00037152 2.4797 0.0015481 3.0748 0.0019196 624.2866185541949 73.131 0.23903 72.655 72.519 72.758 -0.47588 24 10 3 0 0 0 0.63534 1 40010 40010 9.544 1.3884 1 1341400 + 53391 22932 36025 36833 62003 62003 -0.05558757235326084 RNPGKKIIS 9 Unmodified _RNPGKKIIS_ 0 0 0 ENSG00000213512|ENST00000294671|GBP7 ENSG00000213512|ENST00000294671|GBP7 ENSG00000213512|ENST00000294671|GBP7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.2516174316406 2 506.816733 1011.61891 0.9356 0.00047418 -0.21307 -0.00010799 0.72253 0.00036619 506.81674648161106 32.184 0.33298 28.328 28.161 28.494 -3.8562 33 19 2 0 0 0 0.20139 1 18422 18422 10.824 6.0679 1 33897000 53392 10440 36026 36834 62004 62004 0.11356844325405291 RNRDLFFRR 9 Unmodified _RNRDLFFRR_ 0 0 0 ENSG00000187944|ENST00000342506|C2orf66;nc|nan|Q6UXQ4|C2orf66 ENSG00000187944|ENST00000342506|C2orf66 ENSG00000187944|ENST00000342506|C2orf66 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2439270019531 3 427.242533 1278.70577 NaN NaN NaN NaN NaN NaN NaN 22.355 1 22.372 21.872 22.872 0.01749 0 0 0 0.86004 1 11479 11479 0.26902 0.1097 1 53393 9609 36027 36835 62005 62005 0.0775664359982784 RNRFAIFEPI 10 Unmodified _RNRFAIFEPI_ 0 0 0 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2403869628906 3 421.571657 1261.69314 0.0078196 3.2965E-06 1.3072 0.00055107 1.315 0.00055437 421.5725289802095 33.405 0.53763 33.434 33.066 33.604 0.028934 41 23 3 0 0 0 0.69126 1 17513 17513 3.8763 0.55669 1 5392200 + 53394 18747 36028 36836 62006 62006 0.07276187416960056 RNRFAIFEPI 10 Unmodified _RNRFAIFEPI_ 0 0 0 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 421.571657 1261.69314 0.0078196 3.2965E-06 1.3072 0.00055107 1.315 0.00055437 421.5725289802095 33.405 0.53763 33.434 33.066 33.604 0.028934 0 0 NaN 3.8763 41 23 3 NaN NaN NaN NaN 0 NaN NaN 0 5392200 + 53395 18747 36028 36836 0.07276187416960056 RNRLQNIVF 9 Unmodified _RNRLQNIVF_ 0 0 0 REV__ENSG00000183476|ENST00000328828|SH2D7 REV__ENSG00000183476|ENST00000328828|SH2D7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3390502929688 2 580.338364 1158.66217 0.95321 0.00055318 -1.4169 -0.0008223 -0.46372 -0.00026912 580.3372469397207 34.851 0.40184 30.755 30.533 30.935 -4.0951 52 23 3 0 0 0 0.087258 1 20058 20058 36.044 0 1 17763000 + 53396 23350 36029 36837 62007 62007 0.08919034102700607 RNRRPNQL 8 Unmodified _RNRRPNQL_ 0 0 0 REV__ENST00000542077.5_1_1:212238288-212240202:+|nuORF REV__ENST00000542077.5_1_1:212238288-212240202:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8735656738281 3 351.872329 1052.59516 NaN NaN NaN NaN NaN NaN NaN 16.182 1 13.625 13.125 14.125 -2.557 0 0 0 0.97348 1 8364 8364 7.2892 1.9923 1 + 53397 28607 36030 36838 62008 62008 0.07096423611619684 RNRRRWHTP 9 Unmodified _RNRRRWHTP_ 0 0 0 REV__ENST00000444129.6_1_12:21654187-21654346:-|nuORF REV__ENST00000444129.6_1_12:21654187-21654346:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9058837890625 3 426.906144 1277.6966 NaN NaN NaN NaN NaN NaN NaN 19.031 1 19.039 18.539 19.539 0.0077286 0 0 0 0.85359 1 9668 9668 1.0715 0 1 + 53398 27119 36031 36839 62009 62009 0.0688629503415541 RNRRTWSHQF 10 Unmodified _RNRRTWSHQF_ 0 0 0 ENST00000465957.1_1_10:100202584-100202647:-|nuORF ENST00000465957.1_1_10:100202584-100202647:-|nuORF ENST00000465957.1_1_10:100202584-100202647:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.772216796875 3 463.241193 1386.70175 0.15466 7.1645E-05 1.5955 0.00073911 1.7502 0.00081076 463.2418102142727 16.352 0.17931 13.795 13.701 13.88 -2.557 35 22 3 0 0 0 0.23806 1 8507 8507 3.3196 1.5774 1 3284000 53399 13745 36032 36840 62010 62010 0.023865541061240947 RNRSHWPF 8 Unmodified _RNRSHWPF_ 0 0 0 REV__ENSG00000103544|ENST00000417362|VPS35L REV__ENSG00000103544|ENST00000417362|VPS35L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2832641601562 2 550.280849 1098.54715 4.2235 0.0023241 1.2094 0.00066554 5.4329 0.0029896 550.2814880928457 98.905 0.33563 98.876 98.693 99.028 -0.028282 28 11 3 0 0 0 0.80975 1 54939 54939 0.79363 0 1 2754700 + 53400 18314 36033 36841 62011 62011 0.0018134969154743885 RNRSHWPF 8 Unmodified _RNRSHWPF_ 0 0 0 REV__ENSG00000103544|ENST00000417362|VPS35L REV__ENSG00000103544|ENST00000417362|VPS35L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 550.280849 1098.54715 4.2235 0.0023241 1.2094 0.00066554 5.4329 0.0029896 550.2814880928457 98.905 0.33563 98.876 98.693 99.028 -0.028282 0 0 NaN 0.79363 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2754700 + 53401 18314 36033 36841 0.0018134969154743885 RNRWQKRSLTH 11 Unmodified _RNRWQKRSLTH_ 0 0 0 REV__ENSG00000132275|ENST00000254605|RRP8 REV__ENSG00000132275|ENST00000254605|RRP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 741.4129028320312 2 741.413457 1480.81236 NaN NaN NaN NaN NaN NaN NaN 76.4 1 76.448 75.948 76.948 0.047943 0 0 0 0.94307 1 42155 42155 0.30703 0 1 + 53402 19838 36034 36842 62012 62012 0.09118774094372384 RNSSRTYLHY 10 Unmodified _RNSSRTYLHY_ 0 0 0 ENST00000377865.6_1_13:67802483-67802531:-|nuORF ENST00000377865.6_1_13:67802483-67802531:-|nuORF ENST00000377865.6_1_13:67802483-67802531:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8854370117188 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 21.9 1 21.914 21.414 22.414 0.013796 0 0 0 0.99897 1 11235 11235 0.77653 0 1 53403 12534 36035 36843 62013 62013 0.0010893450946696248 RNSSRTYLHY 10 Unmodified _RNSSRTYLHY_ 0 0 0 ENST00000377865.6_1_13:67802483-67802531:-|nuORF ENST00000377865.6_1_13:67802483-67802531:-|nuORF ENST00000377865.6_1_13:67802483-67802531:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.8864135742188 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 14.725 1 12.222 11.722 12.722 -2.5029 0 0 0 0.99897 1 7499 7499 0.77653 0 1 53404 12534 36035 36843 62014 62014 0.0010893450946696248 RNSWRELI 8 Unmodified _RNSWRELI_ 0 0 0 ENST00000510885.2_1_4:57459582-57460608:+|nuORF ENST00000510885.2_1_4:57459582-57460608:+|nuORF ENST00000510885.2_1_4:57459582-57460608:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.5355529785156 3 358.533202 1072.57778 NaN NaN NaN NaN NaN NaN NaN 6.3663 1 3.8843 3.3843 4.3843 -2.482 0 0 0 0.97444 1 3221 3221 1.4819 0.51963 1 53405 14596 36036 36844 62015 62015 0.044390832859335205 RNSYEREMF 9 Unmodified _RNSYEREMF_ 0 0 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000562806.1_1_16:53283882-53288565:+|nuORF;ENST00000555962.5_1_14:21868424-21899982:-|nuORF;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2810668945312 2 616.279854 1230.54516 -0.047836 -2.948E-05 0.063585 3.9186E-05 0.015749 9.706E-06 616.2799201033858 76.823 0.39021 76.343 76.216 76.606 -0.47945 26 17 2 0 0 0 0.58466 1 42049 42049 2.3027 0 1 745480 53406 8091;8666;3755;1884 36037 36845 62016 62016 -0.060894918992289604 RNTICRMQ 8 Unmodified _RNTICRMQ_ 0 0 0 ENSG00000178287|ENST00000642566|SPAG11A ENSG00000178287|ENST00000642566|SPAG11A ENSG00000178287|ENST00000642566|SPAG11A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2544250488281 2 511.255128 1020.4957 NaN NaN NaN NaN NaN NaN NaN 91.5 1 91.5 91 92 0 0 0 0 0.97444 1 50602 50602 0.79363 0 1 53407 8741 36038 36846 62017 62017 -0.01372478389009757 RNTPLSASSL 10 Unmodified _RNTPLSASSL_ 0 0 0 REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7865600585938 2 523.285463 1044.55637 0.45572 0.00023847 0.36085 0.00018883 0.81657 0.0004273 523.2857007000849 28.095 0.18563 28.048 27.928 28.113 -0.046408 9 6 2 0 0 0 0.038363 1 14491 14491 63.961 2.3586 1 6135400 + 53408 28846 36039 36847 62018 62018 0.03587653466570373 RNTPLSASSL 10 Unmodified _RNTPLSASSL_ 0 0 0 REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7865600585938 2 523.285463 1044.55637 0.45572 0.00023847 0.36085 0.00018883 0.81657 0.0004273 523.2857007000849 28.095 0.18563 28.048 27.928 28.113 -0.046408 9 6 2 0 0 0 0.073905 1 14491 14491 63.961 2.3586 1 6135400 + 53409 28846 36039 36847 62019 62019 0.03587653466570373 RNTPLSASSL 10 Unmodified _RNTPLSASSL_ 0 0 0 REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2861938476562 2 523.285463 1044.55637 0.9266 0.00048487 -1.2219 -0.00063942 -0.29533 -0.00015454 523.2847163125768 32.023 0.38887 28.327 28.138 28.527 -3.6958 43 21 3 0 0 0 0.022967 2 18131 18131;18252 72.968 11.366 1 30068000 + 53410 28846 36039 36847 62020;62021 62020 0.03587653466570373 RNTPLSASSL 10 Unmodified _RNTPLSASSL_ 0 0 0 REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 523.285463 1044.55637 0.9266 0.00048487 -1.2219 -0.00063942 -0.29533 -0.00015454 523.2847163125768 32.023 0.38887 28.327 28.138 28.527 -3.6958 0.16657 -0.00019909 NaN 72.968 43 21 3 NaN NaN NaN NaN 0 NaN NaN 0 30068000 + 53411 28846 36039 36847 0.03587653466570373 RNTRKQFWKTF 11 Unmodified _RNTRKQFWKTF_ 0 0 0 ENST00000435033.1_1_19:12491157-12492084:-|nuORF ENST00000435033.1_1_19:12491157-12492084:-|nuORF ENST00000435033.1_1_19:12491157-12492084:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.6130065917969 3 504.612515 1510.81572 1.2136 0.00061241 -1.0643 -0.00053704 0.14936 7.5368E-05 504.61231720381795 35.771 0.46902 31.578 31.351 31.82 -4.1928 122 29 6 0 0 0 0.73237 1 20862 20862 1.2148 0 1 150880000 53412 13307 36040 36848 62022 62022 0.08074024148322678 RNVACSGAS 9 Unmodified _RNVACSGAS_ 0 0 0 ENST00000264220.6_1_4:57301546-57301711:-|nuORF ENST00000264220.6_1_4:57301546-57301711:-|nuORF ENST00000264220.6_1_4:57301546-57301711:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.7047729492188 2 432.703251 863.39195 0.3178 0.00013752 1.6815 0.00072757 1.9993 0.00086509 432.70367317097265 76.137 0.4668 76.185 75.909 76.376 0.047943 50 19 3 0 0 0 0.56345 1 41913 41913 3.5965 0 1 29811000 53413 11309 36041 36849 62023 62023 -0.045210622250237975 RNVLLFNAVLC 11 Unmodified _RNVLLFNAVLC_ 0 0 0 REV__ENSG00000198246|ENST00000373189|SLC29A3 REV__ENSG00000198246|ENST00000373189|SLC29A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5758361816406 3 421.241031 1260.70126 1.3108 0.00055217 0.48893 0.00020596 1.7997 0.00075813 421.2412958578246 74.487 1.0395 68.311 67.903 68.943 -6.1757 123 54 3 0 0 0 0.67037 1 48984 48984 7.0371 0.84524 1 103890000 + 53414 24006 36042 36850 62024 62024 0.08133998342054838 RNVNDLVL 8 Unmodified _RNVNDLVL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7724609375 2 471.771991 941.529429 1.1502 0.00054265 0.062078 2.9286E-05 1.2123 0.00057194 471.7720733245074 36.033 0.51132 31.841 31.555 32.067 -4.1928 56 31 2 0 0 0 0.52622 2 21011 21011;21147 32.305 32.305 1 51470000 + 53415 21279 36043 36851 62025;62026 62025 0.056325896460293734 RNVQFNYPH 9 Unmodified _RNVQFNYPH_ 0 0 0 ENSG00000151655|ENST00000358415|ITIH2 ENSG00000151655|ENST00000358415|ITIH2 ENSG00000151655|ENST00000358415|ITIH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.1958312988281 3 392.19659 1173.56794 -0.61017 -0.00023931 0.55304 0.0002169 -0.057132 -2.2407E-05 392.19684086626796 17.253 0.25127 17.253 17.164 17.415 0 61 55 2 0 0 0 0.58865 1 8460 8460 1.0715 0.10919 1 707190 53416 6132 36044 36852 62027 62027 -0.011901047194442071 RNVSTGDVNVE 11 Unmodified _RNVSTGDVNVE_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7952880859375 2 595.294016 1188.57348 -0.046727 -2.7817E-05 -0.041692 -2.4819E-05 -0.088419 -5.2635E-05 595.2939322436717 22.387 0.26031 22.41 22.273 22.533 0.022896 31 11 4 0 0 0 0.24981 1 11356 11356 29.437 15.822 1 9750600 + 53417 169 36045 36853 62028 62028 -0.013264707182770508 RNVTLPEIF 9 Unmodified _RNVTLPEIF_ 0 0 0 ENSG00000141429|ENST00000269195|GALNT1 ENSG00000141429|ENST00000269195|GALNT1 ENSG00000141429|ENST00000269195|GALNT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5538940429688 3 363.541475 1087.60259 -0.11265 -4.0954E-05 -0.44484 -0.00016172 -0.5575 -0.00020267 363.54130608693515 41.442 0.329 41.139 40.909 41.238 -0.30304 23 15 2 0 0 0 0.20572 1 21959 21959 10.151 5.6217 1 3300700 53418 5326 36046 36854 62029 62029 0.06229718368649628 RNWKSKEWPD 10 Unmodified _RNWKSKEWPD_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.33349609375 2 673.336018 1344.65748 -0.87366 -0.00058826 -3.1375 -0.0021126 -4.0111 -0.0027008 673.3335425197175 28.299 0.20186 28.299 28.128 28.33 0 11 9 2 0 0 0 0.69917 1 14621 14621 2.9952 0.49676 1 1170200 53419 8827 36047 36855 62030 62030 -0.0010589483072180883 RNWWQHRRAYE 11 Unmodified _RNWWQHRRAYE_ 0 0 0 REV__ENSG00000069509|ENST00000378045|FUNDC1 REV__ENSG00000069509|ENST00000378045|FUNDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 801.395263671875 2 801.395264 1600.77598 NaN NaN NaN NaN NaN NaN NaN 93.697 1 93.72 93.22 94.22 0.022987 0 0 0 0.9435 1 52088 52088 0 0 1 + 53420 17452 36048 36856 62031 62031 -0.00038102802341200004 RPAAGPRL 8 Unmodified _RPAAGPRL_ 0 0 0 REV__ENSG00000138061|ENST00000610745|CYP1B1 REV__ENSG00000138061|ENST00000610745|CYP1B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2567138671875 2 419.256311 836.49807 1.4391 0.00060335 -0.40094 -0.0001681 1.0382 0.00043526 419.25617945179624 20.178 0.33109 17.522 17.351 17.682 -2.6564 33 23 2 0 0 0 0.75262 1 10718 10718 12.532 0 1 5048000 + 53421 20296 36049 36857 62032 62032 0.07328061402586172 RPAALRGALL 10 Unmodified _RPAALRGALL_ 0 0 0 ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;ENSG00000026297|ENST00000508775|RNASET2 ENST00000366855.10_1_6:167369102-167369700:-|nuORF ENST00000366855.10_1_6:167369102-167369700:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.33251953125 2 519.33255 1036.65055 0.1052 5.4632E-05 0.059556 3.093E-05 0.16475 8.5562E-05 519.3326339658155 38.381 0.21222 38.398 38.291 38.503 0.01704 14 9 2 0 0 0 0.62068 1 20416 20416 10.074 2.1638 1 1794100 53422 560 36050 36858 62033 62033 0.13368837079360674 RPAALRGALLG 11 Unmodified _RPAALRGALLG_ 0 0 0 ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;ENSG00000026297|ENST00000508775|RNASET2 ENST00000366855.10_1_6:167369102-167369700:-|nuORF ENST00000366855.10_1_6:167369102-167369700:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5652160644531 3 365.564614 1093.67201 -0.32893 -0.00012025 0.53189 0.00019444 0.20296 7.4195E-05 365.56505622858765 36.683 0.21768 36.705 36.619 36.836 0.021542 16 9 2 0 0 0 0.60863 1 19457 19457 10.899 1.355 1 1538800 53423 560 36051 36859 62034 62034 0.12892222108075657 RPAANFDAI 9 Unmodified _RPAANFDAI_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7562255859375 2 487.756341 973.498129 0.18872 9.2049E-05 -1.0973 -0.00053523 -0.90862 -0.00044318 487.7554371656312 39.923 0.32969 39.923 39.7 40.03 0 20 16 2 0 0 0 0.14 1 21419 21419 29.082 8.628 1 2748400 53424 5036 36052 36860 62035 62035 0.010320166119299756 RPAANPIQF 9 Unmodified _RPAANPIQF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2802734375 2 507.279983 1012.54541 -0.48804 -0.00024758 0.20478 0.00010388 -0.28327 -0.0001437 507.2801119516236 44.828 0.32207 44.512 44.386 44.708 -0.31585 40 17 3 0 0 0 0.031062 1 23998 23998 54.774 22.657 1 33889000 53425 7600 36053 36861 62036 62036 0.039642958829290365 RPAANPIQF 9 Unmodified _RPAANPIQF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2805786132812 2 507.279983 1012.54541 0.10023 5.0843E-05 -0.147 -7.4572E-05 -0.046776 -2.3729E-05 507.2797662051186 44.586 0.33239 44.564 44.386 44.718 -0.022064 24 17 2 0 0 0 0.047196 1 23914 23914 46.021 15.796 1 16387000 53426 7600 36053 36861 62037 62037 0.039642958829290365 RPAANPIQF 9 Unmodified _RPAANPIQF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7814636230469 2 507.279983 1012.54541 0.88256 0.00044771 0.48621 0.00024664 1.3688 0.00069435 507.2800509372097 49.367 0.46311 43.971 43.745 44.208 -5.3961 59 29 3 0 0 0 0.019303 3 30729 30729;30847;30993 64.236 20.378 1 99859000 53427 7600 36053 36861 62038;62039;62040 62038 0.039642958829290365 RPAATAVISL 10 Unmodified _RPAATAVISL_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8045654296875 2 499.803291 997.59203 0.04823 2.4106E-05 0.45649 0.00022816 0.50472 0.00025226 499.80385187293786 51.148 0.3243 51.095 50.942 51.266 -0.053871 43 15 4 0 0 0 0.095786 1 27647 27647 47.594 11.088 1 5372000 53428 6085 36054 36862 62041 62041 0.09313735714226823 RPADKRSFIP 10 Unmodified _RPADKRSFIP_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2274169921875 3 396.22789 1185.66184 -0.63538 -0.00025176 1.0617 0.00042068 0.42632 0.00016892 396.22841004794276 26.938 0.18984 26.938 26.782 26.972 0 15 8 2 0 0 0 0.71516 1 13852 13852 1.2148 0 1 786550 53429 10837 36055 36863 62042 62042 0.07643614382845954 RPADKRSFIP 10 Unmodified _RPADKRSFIP_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2278442382812 3 396.22789 1185.66184 0.093179 3.692E-05 -0.19381 -7.6793E-05 -0.10063 -3.9872E-05 396.227794151672 26.706 0.25459 26.734 26.59 26.845 0.028664 25 10 3 0 0 0 0.63668 1 13841 13841 9.2438 1.7667 1 14806000 53430 10837 36055 36863 62043 62043 0.07643614382845954 RPADKRSFIP 10 Unmodified _RPADKRSFIP_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2283935546875 3 396.22789 1185.66184 0.8702 0.0003448 -0.47865 -0.00018966 0.39154 0.00015514 396.22761196928917 29.056 0.27772 25.754 25.642 25.92 -3.3016 22 17 2 0 0 0 0.16688 1 16254 16254 37.771 24.253 1 74123000 53431 10837 36055 36863 62044 62044 0.07643614382845954 RPADKRSFIP 10 Unmodified _RPADKRSFIP_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 396.22789 1185.66184 -0.63538 -0.00025176 1.0617 0.00042068 0.42632 0.00016892 396.22841004794276 26.938 0.18984 26.938 26.782 26.972 0 0.10178 0.00099383 NaN 9.2438 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 786550 53432 10837 36055 36863 0.07643614382845954 RPADPEKNQSL 11 Unmodified _RPADPEKNQSL_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8851928710938 3 418.886081 1253.63641 -0.65179 -0.00027303 -0.18838 -7.8911E-05 -0.84017 -0.00035194 418.88584198649454 16.987 0.15848 16.987 16.903 17.062 0 71 47 2 0 0 0 0.43683 1 8313 8313 19.615 14.568 1 3642300 53433 4276 36056 36864 62045 62045 0.019740950697496373 RPADPEKNQSL 11 Unmodified _RPADPEKNQSL_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8864135742188 3 418.886081 1253.63641 0.89023 0.00037291 0.30779 0.00012893 1.198 0.00050184 418.88612860270774 17.994 0.17021 15.407 15.322 15.492 -2.5866 22 10 3 0 0 0 0.0045481 1 9443 9443 76.068 59.02 1 4268400 53434 4276 36056 36864 62046 62046 0.019740950697496373 RPADSMLNVL 10 Oxidation (M) _RPADSM(Oxidation (M))LNVL_ RPADSM(1)LNVL RPADSM(46)LNVL 0 0 1 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.294921875 2 566.294973 1130.57539 0.11625 6.5833E-05 0.042888 2.4287E-05 0.15914 9.012E-05 566.295053271036 43.584 0.36439 43.584 43.438 43.802 0 35 17 3 0 0 0 0.10406 1 23658 23658 45.74 23.004 1 29696000 53435 6766 36057 36865 62047 62047 1175 0.015328667659787243 RPADSMLNVL 10 Unmodified _RPADSMLNVL_ 0 0 0 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 ENSG00000160888|ENST00000292433|IER2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2984619140625 2 558.297516 1114.58048 0.95578 0.00053361 0.32852 0.00018341 1.2843 0.00071702 558.2981463745999 66.191 0.42426 60.016 59.773 60.197 -6.1757 52 23 3 0 0 0 0.30444 1 43044 43044 27.223 3.2027 1 53944000 53436 6766 36057 36866 62048 62048 0.027771706285875553 RPADVEEGF 9 Unmodified _RPADVEEGF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2431030273438 2 510.243264 1018.47197 NaN NaN NaN NaN NaN NaN NaN 31.548 1 31.548 31.048 32.048 0 0 0 0 0.51965 1 16437 16437 15.248 4.4246 1 53437 8214 36058 36867 62049 62049 -0.03652297350186018 RPADYLFML 9 Unmodified _RPADYLFML_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MSMS AL20221201_MKP_PDAC_01 4 563.5302734375 2 563.291702 1124.56885 NaN NaN NaN NaN NaN NaN NaN 98.842 1 92.667 92.167 93.167 -6.1757 0 0 0 0.27852 1 65646 65646 26.268 3.5319 1 53438 4891 36059 36868 62050 62050 0.011549736052529624 RPAEKKNYL 9 Unmodified _RPAEKKNYL_ 0 0 0 ENST00000327892.12_1_6:30688201-30690330:+|nuORF ENST00000327892.12_1_6:30688201-30690330:+|nuORF ENST00000327892.12_1_6:30688201-30690330:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5489501953125 3 373.548741 1117.62439 0.70936 0.00026498 0.57613 0.00021521 1.2855 0.00048019 373.5487799393948 15.286 0.19586 12.759 12.659 12.855 -2.5273 74 36 3 0 0 0 0.15882 1 7831 7831 27.223 11.975 1 9346900 53439 11831 36060 36869 62051 62051 0.07028523117219265 RPAEKLVTSM 10 Oxidation (M) _RPAEKLVTSM(Oxidation (M))_ RPAEKLVTSM(1) RPAEKLVTSM(50) 0 0 1 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.3104248046875 2 574.310623 1146.60669 -0.21923 -0.00012591 -0.24482 -0.00014061 -0.46406 -0.00026651 574.310706409904 18.199 0.25566 18.199 18.077 18.333 0 111 33 4 0 0 0 0.087164 1 8989 8989 49.527 16.742 1 5836500 53440 9879 36061 36870 62052 62052 1585 0.03925439800059394 RPAEKLVTSM 10 Oxidation (M) _RPAEKLVTSM(Oxidation (M))_ RPAEKLVTSM(1) RPAEKLVTSM(55) 0 0 1 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2112731933594 3 383.209508 1146.60669 1.4924 0.00057189 -0.26647 -0.00010211 1.2259 0.00046977 383.20947343527195 19.684 0.49749 17.028 16.835 17.333 -2.6564 107 36 4 0 0 0 0.061642 2 10357 10357;10461 55.249 43.074 1 56509000 53441 9879 36061 36870 62053;62054 62053 1585 0.03925439800059394 RPAEKLVTSM 10 Oxidation (M) _RPAEKLVTSM(Oxidation (M))_ RPAEKLVTSM(1) RPAEKLVTSM(100) 0 0 1 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8125610351562 2 574.310623 1146.60669 1.134 0.00065128 -0.56442 -0.00032415 0.5696 0.00032713 574.3103914052206 19.682 0.41463 17.025 16.824 17.239 -2.6564 91 32 4 0 0 0 0.0032515 2 10365 10365;10472 103.82 56.075 1 20475000 53442 9879 36061 36870 62055;62056 62055 1585 0.03925439800059394 RPAEKLVTSM 10 Unmodified _RPAEKLVTSM_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8774108886719 3 377.877869 1130.61178 NaN NaN NaN NaN NaN NaN NaN 28.049 1 28.049 27.549 28.549 0 0 0 0 0.95966 1 14472 14472 5.0475 3.1411 1 53443 9879 36061 36871 62057 62057 0.05169743662668225 RPAEKLVTSM 10 Unmodified _RPAEKLVTSM_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.3145141601562 2 566.313166 1130.61178 0.7118 0.0004031 0.75984 0.00043031 1.4716 0.00083341 566.8150342219143 27.959 0.16346 27.913 27.821 27.984 -0.046408 8 5 2 0 0 0 0.32533 1 14450 14450 18.373 10.218 1 3229200 53444 9879 36061 36871 62058 62058 0.05169743662668225 RPAEKLVTSM 10 Unmodified _RPAEKLVTSM_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3130493164062 2 566.313166 1130.61178 0.73627 0.00041696 0.22739 0.00012877 0.96366 0.00054573 566.3134838536921 31.514 0.56169 27.819 27.664 28.226 -3.6958 59 30 3 0 0 0 0.0062542 2 17933 17819;17933 97.741 38.373 1 125230000 53445 9879 36061 36871 62059;62060 62060 0.05169743662668225 RPAEKLVTSM 10 Unmodified _RPAEKLVTSM_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8778381347656 3 377.877869 1130.61178 1.0781 0.00040739 0.73862 0.00027911 1.8167 0.0006865 377.8783266532187 31.562 0.64298 27.867 27.664 28.307 -3.6958 45 34 2 0 0 0 0.39689 1 17973 17973 21.799 1.2185 1 83114000 53446 9879 36061 36871 62061 62061 0.05169743662668225 RPAELEKQLY 10 Unmodified _RPAELEKQLY_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.2301330566406 3 416.231189 1245.67174 -0.34112 -0.00014198 -0.49323 -0.0002053 -0.83434 -0.00034728 416.2306547649437 30.957 0.15913 30.957 30.872 31.031 0 13 7 2 0 0 0 0.5012 1 16115 16115 16.275 10.406 1 2091700 53447 461 36062 36872 62062 62062 0.05872757597580858 RPAERLDYL 9 Unmodified _RPAERLDYL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.543212890625 3 378.208495 1131.60366 0.044394 1.679E-05 0.52823 0.00019978 0.57263 0.00021657 378.2087354103907 35.904 0.27659 35.904 35.755 36.032 0 38 13 4 0 0 0 0.036857 1 18971 18971 40.725 23.282 1 17562000 53448 4696 36063 36873 62063 62063 0.043119327375507055 RPAERLDYL 9 Unmodified _RPAERLDYL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8096923828125 2 566.809105 1131.60366 0.30197 0.00017116 0.068311 3.8719E-05 0.37028 0.00020988 566.8089364043681 35.904 0.25529 35.904 35.755 36.01 0 30 12 3 0 0 0 0.044296 1 18980 18980 47.594 21.326 1 12659000 53449 4696 36063 36873 62064 62064 0.043119327375507055 RPAERLDYL 9 Unmodified _RPAERLDYL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8095703125 2 566.809105 1131.60366 0.66127 0.00037481 -0.29023 -0.00016451 0.37103 0.00021031 566.8093924958123 39.69 0.31231 35.239 35.107 35.42 -4.4509 39 19 3 0 0 0 0.047714 1 23570 23570 45.74 5.7826 1 16272000 53450 4696 36063 36873 62065 62065 0.043119327375507055 RPAERLDYL 9 Unmodified _RPAERLDYL_ 0 0 0 nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 nc|ENSG00000135372|Q9H0A0-2|NAT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2090148925781 3 378.208495 1131.60366 1.0064 0.00038063 -0.93722 -0.00035447 0.069181 2.6165E-05 378.20859175872135 39.728 0.42013 35.277 35.014 35.434 -4.4509 62 26 3 0 0 0 0.10247 1 23597 23597 24.882 14.082 1 31727000 53451 4696 36063 36873 62066 62066 0.043119327375507055 RPAETARLRAL 11 Unmodified _RPAETARLRAL_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5860900878906 3 418.586077 1252.7364 0.10667 4.4651E-05 -0.068693 -2.8754E-05 0.037979 1.5897E-05 418.92034461136143 24.057 0.19976 24.078 23.968 24.167 0.021185 13 7 2 0 0 0 0.21145 1 12399 12399 31.462 24.425 1 7214500 53452 1797 36064 36874 62067 62067 0.12014377194213921 RPAETARLRAL 11 Unmodified _RPAETARLRAL_ 0 0 0 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 ENSG00000100335|ENST00000325301|MIEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5863342285156 3 418.586077 1252.7364 0.83117 0.00034792 0.72683 0.00030424 1.558 0.00065216 418.5860539570673 26.9 0.35738 23.863 23.646 24.004 -3.0365 42 18 3 0 0 0 0.25257 2 14812 14812;14927 29.291 15.773 1 22790000 53453 1797 36064 36874 62068;62069 62068 0.12014377194213921 RPAEVGGMQL 10 Oxidation (M) _RPAEVGGM(Oxidation (M))QL_ RPAEVGGM(1)QL RPAEVGGM(41)QL 0 0 1 nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2730712890625 2 537.274041 1072.53353 -0.37117 -0.00019942 -0.1394 -7.4897E-05 -0.51057 -0.00027431 537.2742031559151 26.688 0.2526 26.688 26.53 26.782 0 34 11 4 0 0 0 0.14294 1 13690 13690 40.725 20.271 1 7365900 53454 4103 36065 36875 62070 62070 729 0.00016311077456521161 RPAEVGGMQL 10 Unmodified _RPAEVGGMQL_ 0 0 0 nc|ENSG00000128951|P33316-2|DUT;ENSG00000128951|ENST00000331200|DUT nc|ENSG00000128951|P33316-2|DUT nc|ENSG00000128951|P33316-2|DUT MSMS AL20221201_MKP_PDAC_01 4 529.2759399414062 2 529.276583 1056.53861 NaN NaN NaN NaN NaN NaN NaN 47.01 1 41.929 41.429 42.429 -5.0805 0 0 0 0.023017 1 29129 29129 83.429 33.496 1 53455 4103 36065 36876 62071 62071 0.012606149400880895 RPAFFAERL 9 Unmodified _RPAFFAERL_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8099975585938 2 553.808908 1105.60326 0.88331 0.00048919 0.58898 0.00032619 1.4723 0.00081537 553.809086195754 47.369 0.32129 47.33 47.177 47.498 -0.038643 42 14 4 0 0 0 0.01861 2 25486 25486;25592 70.332 25.925 1 9906500 53456 5036 36066 36877 62072;62073 62072 0.054685578083763176 RPAFFAERL 9 Unmodified _RPAFFAERL_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5421752929688 3 369.541697 1105.60326 0.7103 0.00026249 0.45045 0.00016646 1.1607 0.00042894 369.5418450432956 47.369 0.3629 47.331 47.177 47.54 -0.038643 40 16 3 0 0 0 0.2289 1 25502 25502 20.581 20.581 1 7587900 53457 5036 36066 36877 62074 62074 0.054685578083763176 RPAFPVKKL 9 Unmodified _RPAFPVKKL_ 0 0 0 ENST00000587580.1_1_19:4402729-4408912:+|nuORF;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A ENST00000587580.1_1_19:4402729-4408912:+|nuORF ENST00000587580.1_1_19:4402729-4408912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5624084472656 3 352.562321 1054.66514 0.05934 2.0921E-05 2.1436 0.00075576 2.203 0.00077669 352.5629825933127 28.282 0.21321 28.311 28.188 28.401 0.029566 13 8 2 0 0 0 0.171 1 14711 14711 26.021 15.87 1 3319700 53458 7652 36067 36878 62075 62075 0.13998909227507284 RPAFPVKKL 9 Unmodified _RPAFPVKKL_ 0 0 0 ENST00000587580.1_1_19:4402729-4408912:+|nuORF;nc|ENSG00000167670|Q13111-2|CHAF1A;nc|ENSG00000167670|Q13111-3|CHAF1A;ENSG00000167670|ENST00000301280|CHAF1A ENST00000587580.1_1_19:4402729-4408912:+|nuORF ENST00000587580.1_1_19:4402729-4408912:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.5621643066406 3 352.562321 1054.66514 NaN NaN NaN NaN NaN NaN NaN 31.348 1 27.652 27.152 28.152 -3.6958 0 0 0 0.046065 1 17745 17745 59.368 34.377 1 53459 7652 36067 36878 62076 62076 0.13998909227507284 RPAGLPEKY 9 Unmodified _RPAGLPEKY_ 0 0 0 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7874755859375 2 515.787641 1029.56073 -0.18046 -9.3079E-05 -0.54003 -0.00027854 -0.72049 -0.00037162 515.7873308543541 24.267 0.41169 24.267 24.058 24.469 0 85 24 4 0 0 0 0.014417 2 12438 12340;12438 69.105 33.061 1 50602000 53460 4598 36068 36879 62077;62078 62078 0.04713162680127425 RPAGLPEKY 9 Unmodified _RPAGLPEKY_ 0 0 0 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7879028320312 2 515.787641 1029.56073 0.056804 2.9299E-05 0.53581 0.00027636 0.59261 0.00030566 515.7877890479083 24.45 0.30125 24.449 24.338 24.639 -0.0016766 20 11 3 0 0 0 0.012668 1 12487 12487 72.968 36.924 1 6667700 53461 4598 36068 36879 62079 62079 0.04713162680127425 RPAGLPEKY 9 Unmodified _RPAGLPEKY_ 0 0 0 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.787109375 2 515.787641 1029.56073 0.33238 0.00017144 -1.0112 -0.00052158 -0.67884 -0.00035014 515.7871379442108 24.158 0.17455 24.179 24.091 24.265 0.021185 10 6 2 0 0 0 0.07087 1 12477 12477 39.95 11.463 1 4060000 53462 4598 36068 36879 62080 62080 0.04713162680127425 RPAGLPEKY 9 Unmodified _RPAGLPEKY_ 0 0 0 ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1 ENSG00000134339|ENST00000256733|SAA2 ENSG00000134339|ENST00000256733|SAA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7857666015625 2 515.787641 1029.56073 0.50954 0.00026282 0.1065 5.4932E-05 0.61604 0.00031775 515.787558324031 26.85 0.52927 23.813 23.553 24.082 -3.0365 116 27 6 0 0 0 0.017075 3 14718 14718;14831;14949 66.457 22.05 1 247180000 53463 4598 36068 36879 62081;62082;62083 62081 0.04713162680127425 RPAGLSPTL 9 Unmodified _RPAGLSPTL_ 0 0 0 nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4 nc|ENSG00000144560|Q14135-5|VGLL4 nc|ENSG00000144560|Q14135-5|VGLL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.77099609375 2 456.269084 910.523616 0.75752 0.00034563 -1.8064 -0.00082419 -1.0489 -0.00047856 456.268056939664 43.22 0.2529 38.455 38.272 38.525 -4.7648 20 17 2 0 0 0 0.032796 1 26244 26244 53.833 1.5644 1 10680000 53464 5620 36069 36880 62084 62084 0.06477491134376123 RPAGPGGSRG 10 Unmodified _RPAGPGGSRG_ 0 0 0 ENST00000392975.6_1_17:61511508-61511766:-|nuORF ENST00000392975.6_1_17:61511508-61511766:-|nuORF ENST00000392975.6_1_17:61511508-61511766:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2439575195312 2 456.243932 910.473312 0.27756 0.00012664 -0.28601 -0.00013049 -0.0084493 -3.8549E-06 456.2439378204242 22.913 0.39541 20.134 19.91 20.305 -2.7784 51 27 3 0 0 0 0.5933 1 12423 12423 11.495 0.67078 1 13067000 53465 12688 36070 36881 62085 62085 0.014493815292325962 RPAGPPGEYFQ 11 Unmodified _RPAGPPGEYFQ_ 0 0 0 REV__ENSG00000187942|ENST00000344642|LDLRAD2 REV__ENSG00000187942|ENST00000344642|LDLRAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8683471679688 3 406.86825 1217.58292 1.2017 0.00048892 0.32517 0.0001323 1.5268 0.00062122 406.86829819685425 32.338 0.41314 28.482 28.319 28.732 -3.8562 50 23 3 0 0 0 0.67037 1 18383 18383 7.0371 1.2537 1 32126000 + 53466 23674 36071 36882 62086 62086 -0.01716657642100472 RPAIVQNITF 10 Unmodified _RPAIVQNITF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8349609375 2 579.835123 1157.65569 1.1262 0.000653 -0.46349 -0.00026875 0.66269 0.00038425 579.8349158638508 58.152 0.19968 58.091 57.995 58.195 -0.060719 17 9 2 0 0 0 0.14923 1 31669 31669 39.95 15.929 1 3323500 53467 4072 36072 36883 62087 62087 0.08317096151313308 RPAKAAVHL 9 Unmodified _RPAKAAVHL_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MSMS AL20221201_MKP_PDAC_01 4 481.7988586425781 2 481.798343 961.582134 NaN NaN NaN NaN NaN NaN NaN 17.798 1 15.211 14.711 15.711 -2.5866 0 0 0 0.6557 1 9336 9336 10.824 1.4765 1 53468 613 36073 36884 62088 62088 0.09980592499493923 RPAKGNQI 8 Unmodified _RPAKGNQI_ 0 0 0 REV__ENSG00000181072|ENST00000680005|CHRM2 REV__ENSG00000181072|ENST00000680005|CHRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2597961425781 2 442.259051 882.503549 1.267 0.00056036 -1.2265 -0.00054243 0.040541 1.793E-05 442.2583690178677 20.174 0.6234 17.518 17.275 17.898 -2.6564 130 38 5 0 0 0 0.79669 1 10830 10830 8.5933 0.68312 1 521870000 + 53469 23187 36074 36885 62089 62089 0.05759740194423557 RPAKKHLEL 9 Unmodified _RPAKKHLEL_ 0 0 0 ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15;nc|ENSG00000164338|Q8TED0-2|UTP15 ENSG00000164338|ENST00000296792|UTP15 ENSG00000164338|ENST00000296792|UTP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5611572265625 3 364.560981 1090.66111 0.8212 0.00029938 0.26115 9.5204E-05 1.0823 0.00039458 364.56103168884425 15.218 0.22354 12.69 12.605 12.828 -2.5273 78 38 3 0 0 0 0.13639 1 7774 7774 29.437 15.822 1 6168800 53470 7183 36075 36886 62090 62090 0.11940819733786157 RPAKLKNLILL 11 Unmodified _RPAKLKNLILL_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2940673828125 3 426.958852 1277.85473 1.4149 0.00060411 0.10392 4.4368E-05 1.5188 0.00064848 427.2931503484353 96.908 0.3553 90.732 90.472 90.827 -6.1757 36 20 2 0 0 0 0.20815 1 64175 64175 31.636 3.4021 1 9509100 53471 2781 36076 36887 62091 62091 0.22691356450036437 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.9301452636719 3 432.929733 1295.76737 0.46231 0.00020015 0.12378 5.3586E-05 0.58608 0.00025373 432.92979120430715 30.681 0.27147 30.578 30.419 30.691 -0.10269 35 10 4 0 0 0 0.15928 1 15920 15920 34.79 19.252 1 19601000 53472 6130 36077 36888 62092 62092 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.929931640625 3 432.929733 1295.76737 0.061653 2.6692E-05 -0.17186 -7.4403E-05 -0.11021 -4.7711E-05 432.92971969320195 30.411 0.69979 30.441 30.182 30.882 0.030106 100 30 6 0 0 0 0.14665 2 15831 15831;15927 42.068 23.728 1 296940000 53473 6130 36077 36888 62093;62094 62093 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9300231933594 3 432.929733 1295.76737 0.91621 0.00039665 -0.25358 -0.00010978 0.66262 0.00028687 432.92960847639097 34.359 0.64468 30.264 30.023 30.668 -4.0951 136 37 5 0 0 0 0.038834 3 19846 19719;19846;19973 50.648 22.467 1 576610000 53474 6130 36077 36888 62095;62096;62097 62096 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8905029296875 2 648.890961 1295.76737 0.72685 0.00047165 -0.51235 -0.00033246 0.21451 0.00013919 648.8904519521778 34.424 0.41245 30.329 30.106 30.518 -4.0951 43 23 2 0 0 0 0.020907 2 19805 19805;19932 57.204 29.575 1 23130000 53475 6130 36077 36888 62098;62099 62098 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9295043945312 3 432.929733 1295.76737 0.74473 0.00032242 -0.18307 -7.9255E-05 0.56167 0.00024316 432.92963983332663 66.893 1.3429 60.718 60.137 61.48 -6.1757 167 75 3 0 0 0 0.018255 6 43904 43211;43334;43473;43619;43763;43904 55.839 32.692 1 41736000 53476 6130 36077 36888 62100;62101;62102;62103;62104;62105 62105 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.9300537109375 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 65.267 1 59.091 58.591 59.591 -6.1757 0 0 0 0.57923 1 42358 42358 22.109 9.2529 1 53477 6130 36077 36888 62106 62106 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.929443359375 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 65.465 1 59.289 58.789 59.789 -6.1757 0 0 0 0.13892 1 42496 42496 42.862 21.991 1 53478 6130 36077 36888 62107 62107 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.9302062988281 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 65.652 1 59.476 58.976 59.976 -6.1757 0 0 0 0.0077602 1 42632 42632 65.172 40.215 1 53479 6130 36077 36888 62108 62108 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.9293518066406 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 65.865 1 59.69 59.19 60.19 -6.1757 0 0 0 0.10594 1 42791 42791 47.724 27.737 1 53480 6130 36077 36888 62109 62109 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.9302978515625 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 66.059 1 59.883 59.383 60.383 -6.1757 0 0 0 0.26205 1 42937 42937 34.79 19.252 1 53481 6130 36077 36888 62110 62110 0.13131530508462674 RPALERSLKNL 11 Unmodified _RPALERSLKNL_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MSMS AL20221201_MKP_PDAC_01 4 432.93017578125 3 432.929733 1295.76737 NaN NaN NaN NaN NaN NaN NaN 66.252 1 60.077 59.577 60.577 -6.1757 0 0 0 0.34378 1 43085 43085 42.068 20.478 1 53482 6130 36077 36888 62111 62111 0.13131530508462674 RPALFANLF 9 Unmodified _RPALFANLF_ 0 0 0 nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENSG00000132382|ENST00000254718|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF nc|ENSG00000132382|Q9BQG0-2|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MSMS AL20221201_MKP_PDAC_01 4 524.8004760742188 2 524.800552 1047.58655 NaN NaN NaN NaN NaN NaN NaN 98.916 1 92.741 92.241 93.241 -6.1757 0 0 0 0.068038 1 65722 65722 39.957 7.6518 1 53483 4400 36078 36889 62112 62112 0.06466056922386088 RPALGSSVAL 10 Unmodified _RPALGSSVAL_ 0 0 0 ENST00000530683.5_1_11:407853-409994:-|nuORF;ENSG00000185187|ENST00000431843|SIGIRR;nc|ENSG00000185187|Q6IA17-2|SIGIRR;ENST00000528698.5_1_11:407426-409994:-|nuORF ENST00000530683.5_1_11:407853-409994:-|nuORF ENST00000530683.5_1_11:407853-409994:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 485.788330078125 2 485.787641 969.56073 NaN NaN NaN NaN NaN NaN NaN 48.466 1 43.147 42.647 43.647 -5.319 0 0 0 0.30988 1 30194 30194 36.506 9.6225 1 53484 9342 36079 36890 62113 62113 0.07473162680128098 RPALLHSQF 9 Unmodified _RPALLHSQF_ 0 0 0 nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ nc|ENSG00000144802|Q9BYH8-3|NFKBIZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7998046875 2 534.801083 1067.58761 NaN NaN NaN NaN NaN NaN NaN 34.695 1 34.722 34.222 35.222 0.027401 0 0 0 0.22437 1 18303 18303 29.082 15.176 1 53485 5645 36080 36891 62114 62114 0.05652271291319266 RPALPLIL 8 Unmodified _RPALPLIL_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MSMS AL20221201_MKP_PDAC_01 4 446.8029479980469 2 446.802563 891.590573 NaN NaN NaN NaN NaN NaN NaN 97.156 1 90.98 90.48 91.48 -6.1757 0 0 0 0.65904 1 64391 64391 30.225 0 1 53486 598 36081 36892 62115 62115 0.14044146416131298 RPALPVSYL 9 Unmodified _RPALPVSYL_ 0 0 0 ENSG00000167615|ENST00000326764|LENG8 ENSG00000167615|ENST00000326764|LENG8 ENSG00000167615|ENST00000326764|LENG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3007507324219 2 508.300384 1014.58622 0.48297 0.00024549 -0.19959 -0.00010145 0.28338 0.00014404 508.3002991358356 61.478 0.27914 61.445 61.293 61.572 -0.032787 25 13 2 0 0 0 0.05447 1 33543 33543 43.858 15.371 1 5754800 53487 7639 36082 36893 62116 62116 0.07950637202554844 RPALQHVVKVL 11 Unmodified _RPALQHVVKVL_ 0 0 0 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 ENSG00000108733|ENST00000225873|PEX12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.6026611328125 3 420.603068 1258.78738 -0.12268 -5.1601E-05 -0.35406 -0.00014892 -0.47674 -0.00020052 420.60307631806035 35.544 0.22857 35.569 35.434 35.663 0.024967 21 10 3 0 0 0 0.13384 1 18790 18790 38.559 33.036 1 4246200 53488 2600 36083 36894 62117 62117 0.16833326239066082 RPANHRQLTF 10 Unmodified _RPANHRQLTF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2291870117188 3 413.895022 1238.66324 NaN NaN NaN NaN NaN NaN NaN 20.436 1 20.464 19.964 20.964 0.028357 0 0 0 0.96756 1 10344 10344 4.1895 2.1035 1 53489 9391 36084 36895 62118 62118 0.053452484715762694 RPANHRQLTF 10 Unmodified _RPANHRQLTF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8951416015625 3 413.895022 1238.66324 -0.035164 -1.4554E-05 0.081547 3.3752E-05 0.046384 1.9198E-05 413.89518427129406 20.42 0.39612 20.431 20.279 20.675 0.010553 68 20 5 0 0 0 0.22922 2 10363 10363;10467 31.636 27.088 1 54674000 53490 9391 36084 36895 62119;62120 62119 0.053452484715762694 RPANHRQLTF 10 Unmodified _RPANHRQLTF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.8951416015625 3 413.895022 1238.66324 0.89884 0.00037203 0.22397 9.2701E-05 1.1228 0.00046473 413.8949981543506 22.307 0.57988 19.572 19.274 19.854 -2.7348 122 31 6 0 0 0 0.086206 3 12003 11897;12003;12111 49.742 49.742 1 277440000 53491 9391 36084 36895 62121;62122;62123 62122 0.053452484715762694 RPANHRQLTF 10 Unmodified _RPANHRQLTF_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.34326171875 2 620.338895 1238.66324 0.45775 0.00028396 2.0469 0.0012698 2.5046 0.0015537 620.340312783726 22.316 0.33975 19.582 19.394 19.733 -2.7348 43 17 3 0 0 0 0.1605 1 11954 11954 43.982 19.961 1 6834000 53492 9391 36084 36895 62124 62124 0.053452484715762694 RPANPPGLL 9 Unmodified _RPANPPGLL_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7774353027344 2 467.777077 933.5396 0.57584 0.00026936 -0.35145 -0.0001644 0.22439 0.00010496 467.77687103577944 40.653 0.39167 40.35 40.171 40.563 -0.30304 46 18 3 0 0 0 0.026094 2 21467 21467;21569 57.471 3.8958 1 7847500 53493 2308 36085 36896 62125;62126 62125 0.07017197371271777 RPAPAQRLRK 10 Unmodified _RPAPAQRLRK_ 0 0 0 ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000112041|O00294-2|TULP1 ENSG00000112041|ENST00000229771|TULP1 ENSG00000112041|ENST00000229771|TULP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2518310546875 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 89.042 1 88.538 88.038 89.038 -0.50423 0 0 0 1.0061 1 48689 48689 0 0 1 53494 2852 36086 36897 62127 62127 0.14306118122226508 RPAPAQRLRK 10 Unmodified _RPAPAQRLRK_ 0 0 0 ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000112041|O00294-2|TULP1 ENSG00000112041|ENST00000229771|TULP1 ENSG00000112041|ENST00000229771|TULP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2505187988281 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 89.529 1 89.028 88.528 89.528 -0.50171 0 0 0 1.0061 1 48948 48948 0 0 1 53495 2852 36086 36897 62128 62128 0.14306118122226508 RPAPAQRLRK 10 Unmodified _RPAPAQRLRK_ 0 0 0 ENSG00000112041|ENST00000229771|TULP1;nc|ENSG00000112041|O00294-2|TULP1 ENSG00000112041|ENST00000229771|TULP1 ENSG00000112041|ENST00000229771|TULP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.8272094726562 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 89.639 1 89.137 88.637 89.637 -0.50171 0 0 0 1.0061 1 49006 49006 0 0 1 53496 2852 36086 36897 62129 62129 0.14306118122226508 RPAPARPTM 9 Unmodified _RPAPARPTM_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;ENST00000417536.5_1_22:38046171-38052013:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MSMS AL20221201_MKP_PDAC_01 4 498.7744445800781 2 498.774011 995.533469 NaN NaN NaN NaN NaN NaN NaN 18.708 1 16.087 15.587 16.587 -2.6215 0 0 0 0.49196 1 9871 9871 16.149 5.9657 1 53497 1752 36087 36898 62130 62130 0.03552355868100676 RPAPLSAEL 9 Unmodified _RPAPLSAEL_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2741394042969 2 477.274367 952.53418 0.45696 0.0002181 -0.06824 -3.2569E-05 0.38872 0.00018553 477.2743858146235 42.294 0.40209 42.294 42.105 42.507 0 48 19 3 0 0 0 0.010611 1 22830 22830 78.728 6.8058 1 21366000 53498 7617 36088 36899 62131 62131 0.056014737887949195 RPAPLSAEL 9 Unmodified _RPAPLSAEL_ 0 0 0 ENSG00000167508|ENST00000301012|MVD;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF ENSG00000167508|ENST00000301012|MVD ENSG00000167508|ENST00000301012|MVD MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2743530273438 2 477.274367 952.53418 0.9667 0.00046138 -1.1891 -0.00056755 -0.22245 -0.00010617 477.27381760515533 47.202 0.46389 42.121 41.933 42.397 -5.0805 56 32 2 0 0 0 0.028475 3 29285 29156;29285;29447 56.177 0 1 41793000 53499 7617 36088 36899 62132;62133;62134 62133 0.056014737887949195 RPAPPAAVL 9 Unmodified _RPAPPAAVL_ 0 0 0 ENSG00000120256|ENST00000239367|LRP11;nc|ENSG00000120256|Q86VZ4-2|LRP11 ENSG00000120256|ENST00000239367|LRP11 ENSG00000120256|ENST00000239367|LRP11 MSMS AL20221201_MKP_PDAC_01 4 446.2744445800781 2 446.27417 890.533787 NaN NaN NaN NaN NaN NaN NaN 43.146 1 38.382 37.882 38.882 -4.7648 0 0 0 0.17247 1 26167 26167 34.102 5.6156 1 53500 3503 36089 36900 62135 62135 0.08414098859600472 RPAPPAQSL 9 Unmodified _RPAPPAQSL_ 0 0 0 nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2 nc|ENSG00000072134|O95208-5|EPN2 nc|ENSG00000072134|O95208-5|EPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2698364257812 2 468.766709 935.518865 -0.091468 -4.2877E-05 0.39339 0.00018441 0.30193 0.00014153 468.76661863265423 25.435 0.35298 25.435 25.26 25.613 0 34 16 3 0 0 0 0.14 2 13003 13003;13100 29.082 10.935 1 1915900 53501 1072 36090 36901 62136;62137 62136 0.048526069916078995 RPAPPAQSL 9 Unmodified _RPAPPAQSL_ 0 0 0 nc|ENSG00000072134|O95208-5|EPN2;nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2 nc|ENSG00000072134|O95208-5|EPN2 nc|ENSG00000072134|O95208-5|EPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7673950195312 2 468.766709 935.518865 0.67319 0.00031557 0.98893 0.00046358 1.6621 0.00077914 468.76715598521844 28.584 0.34322 25.436 25.23 25.573 -3.1482 27 17 2 0 0 0 0.025842 1 15996 15996 57.722 19.571 1 12285000 53502 1072 36090 36901 62138 62138 0.048526069916078995 RPAPRALVL 9 Unmodified _RPAPRALVL_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8223571777344 2 496.821818 991.629084 -0.067866 -3.3717E-05 0.23583 0.00011716 0.16796 8.3447E-05 496.82195147476307 36.31 0.29334 36.335 36.144 36.437 0.024967 30 12 3 0 0 0 0.10734 1 19195 19195 32.305 0 1 5241700 53503 5409 36091 36902 62139 62139 0.1329345205062964 RPAPVEISY 9 Unmodified _RPAPVEISY_ 0 0 0 ENST00000484483.1_1_1:32381486-32384666:-|nuORF;nc|ENSG00000184007|Q12974-2|PTP4A2;nc|ENSG00000184007|Q12974-3|PTP4A2;nc|ENSG00000184007|Q12974-4|PTP4A2;ENSG00000184007|ENST00000647444|PTP4A2 ENST00000484483.1_1_1:32381486-32384666:-|nuORF ENST00000484483.1_1_1:32381486-32384666:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.2796020507812 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 46.151 1 41.196 40.696 41.696 -4.9549 0 0 0 0.083082 1 28458 28458 47.749 11.622 1 53504 9215 36092 36903 62140 62140 0.030694564432451443 RPAPVEVTY 9 Unmodified _RPAPVEVTY_ 0 0 0 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2791748046875 2 516.279649 1030.54475 0.058151 3.0022E-05 -0.48811 -0.000252 -0.42995 -0.00022198 516.2793048303333 35.636 0.55659 35.636 35.38 35.937 0 111 27 5 0 0 0 0.028475 3 18869 18757;18869;18976 56.177 18.203 1 479540000 53505 2872 36093 36904 62141;62142;62143 62142 0.030694564432451443 RPAPVEVTY 9 Unmodified _RPAPVEVTY_ 0 0 0 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.279296875 2 516.279649 1030.54475 -0.51717 -0.000267 0.17185 8.8724E-05 -0.34532 -0.00017828 516.2797447406429 35.833 0.37907 35.611 35.393 35.772 -0.2224 38 16 3 0 0 0 0.044011 1 18830 18830 47.749 9.7747 1 11313000 53506 2872 36093 36904 62144 62144 0.030694564432451443 RPAPVEVTY 9 Unmodified _RPAPVEVTY_ 0 0 0 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2805786132812 2 516.279649 1030.54475 0.052663 2.7189E-05 0.84554 0.00043653 0.8982 0.00046372 516.2801861951989 35.506 0.30849 35.531 35.373 35.682 0.024971 34 14 3 0 0 0 0.044011 1 18750 18750 47.749 17.112 1 5401400 53507 2872 36093 36904 62145 62145 0.030694564432451443 RPAPVEVTY 9 Unmodified _RPAPVEVTY_ 0 0 0 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 ENSG00000112245|ENST00000626021|PTP4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2798461914062 2 516.279649 1030.54475 0.50774 0.00026214 0.30646 0.00015822 0.8142 0.00042036 516.2797131984514 40.45 0.74108 35.92 35.549 36.29 -4.5294 187 52 5 0 0 0 0.020973 4 24116 23988;24116;24246;24378 62.573 18.714 1 924980000 53508 2872 36093 36904 62146;62147;62148;62149 62147 0.030694564432451443 RPAQLHIGF 9 Unmodified _RPAQLHIGF_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.796875 2 519.795801 1037.57705 -0.048787 -2.5359E-05 0.20921 0.00010875 0.16042 8.3386E-05 519.7958786056172 45.061 0.24892 45.039 44.895 45.144 -0.022064 20 13 2 0 0 0 0.012148 2 24149 24136;24149 74.423 49.023 1 39939000 53509 4284 36094 36905 62150;62151 62151 0.05976288636884419 RPAQLHIGF 9 Unmodified _RPAQLHIGF_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.79638671875 2 519.795801 1037.57705 1.1599 0.0006029 -1.9226 -0.00099936 -0.76273 -0.00039646 519.794534347339 49.416 0.53685 44.02 43.824 44.361 -5.3961 46 29 2 0 0 0 0.016184 1 30814 30814 67.344 41.945 1 72686000 53510 4284 36094 36905 62152 62152 0.05976288636884419 RPAQSFLM 8 Unmodified _RPAQSFLM_ 0 0 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2505493164062 2 475.249837 948.485122 1.1399 0.00054172 -0.46216 -0.00021964 0.67771 0.00032208 475.2496501765115 50.257 0.46146 44.718 44.452 44.914 -5.5391 49 29 2 0 0 0 0.52622 1 31555 31555 32.305 5.4218 1 24106000 53511 2711 36095 36906 62153 62153 0.008818622282092292 RPAQVSQPF 9 Unmodified _RPAQVSQPF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2775268554688 2 515.277441 1028.54033 0.85249 0.00043927 1.3727 0.00070731 2.2252 0.0011466 515.2783441357612 35.622 0.39523 31.43 31.218 31.613 -4.1928 53 24 3 0 0 0 0.05447 1 20671 20671 43.858 9.7559 1 15601000 53512 3315 36096 36907 62154 62154 0.027199920203202055 RPAQVSQPF 9 Unmodified _RPAQVSQPF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C;ENST00000498596.5_1_1:171556213-171560772:+|nuORF nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.277441 1028.54033 -0.26362 -0.00013584 1.7734 0.00091381 1.5098 0.00077797 515.7799712010267 31.845 0.19982 31.845 31.72 31.92 0 0.20167 0.00033086 NaN 43.858 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 692340 53513 3315 36096 36907 0.027199920203202055 RPARCPSTFP 10 Unmodified _RPARCPSTFP_ 0 0 0 REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 566.2914428710938 2 566.290025 1130.5655 NaN NaN NaN NaN NaN NaN NaN 37.196 1 32.913 32.413 33.413 -4.2835 0 0 0 0.83398 1 21810 21810 10.824 0 1 + 53514 27928 36097 36908 62155 62155 0.005437235512317784 RPARQFEWN 9 Unmodified _RPARQFEWN_ 0 0 0 REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3038940429688 2 602.304521 1202.59449 -0.46729 -0.00028145 -1.1671 -0.00070296 -1.6344 -0.00098441 602.3040710568013 22.943 0.30506 20.165 20.031 20.336 -2.7784 30 18 2 0 0 0 0.5209 1 12456 12456 9.3831 6.1018 1 5655800 + 53515 28845 36098 36909 62156 62156 0.0012958417189565807 RPARSYFK 8 Unmodified _RPARSYFK_ 0 0 0 REV__ENST00000460859.1_1_1:46126839-46153731:-|nuORF REV__ENST00000460859.1_1_1:46126839-46153731:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.7863159179688 2 512.787976 1023.5614 NaN NaN NaN NaN NaN NaN NaN 16.269 1 13.712 13.212 14.212 -2.557 0 0 0 0.95973 1 8416 8416 8.5933 0 1 + 53516 27308 36099 36910 62157 62157 0.05056002119840741 RPASANISL 9 Unmodified _RPASANISL_ 0 0 0 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 ENSG00000197724|ENST00000359246|PHF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7647399902344 2 464.764166 927.513779 0.75777 0.00035218 0.15848 7.3655E-05 0.91625 0.00042584 464.76443332161824 39.533 0.38012 35.082 34.914 35.294 -4.4509 34 23 2 0 0 0 0.032796 1 23460 23460 53.833 5.4869 1 14930000 53517 9993 36100 36911 62158 62158 0.047123031289856954 RPASDEIKT 9 Unmodified _RPASDEIKT_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MSMS AL20221201_MKP_PDAC_01 4 508.7692565917969 2 508.772188 1015.52982 NaN NaN NaN NaN NaN NaN NaN 15.726 1 13.199 12.699 13.699 -2.5273 0 0 0 0.83812 1 8094 8094 2.9952 0.41776 1 53518 2920 36101 36912 62159 62159 0.022679645752418764 RPASDGPHF 9 Unmodified _RPASDGPHF_ 0 0 0 REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF REV__ENST00000517791.1_1_5:149785806-149786884:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.239501953125 2 492.238316 982.462078 NaN NaN NaN NaN NaN NaN NaN 32.501 1 32.501 32.001 33.001 0 0 0 0 0.26667 1 16982 16982 26.884 5.137 1 + 53519 28229 36102 36913 62160 62160 -0.02985440564907549 RPASRFEVL 9 Unmodified _RPASRFEVL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.8739013671875 3 358.873336 1073.59818 -0.12707 -4.5601E-05 0.74168 0.00026617 0.61461 0.00022057 358.8737155816186 37.55 0.2396 37.278 37.136 37.375 -0.27133 23 9 3 0 0 0 0.28023 1 19716 19716 17.443 11.251 1 3450900 53520 3740 36103 36914 62161 62161 0.0643225394574074 RPASRFEVL 9 Unmodified _RPASRFEVL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8744201660156 3 358.873336 1073.59818 1.866 0.00066966 1.1681 0.00041922 3.0342 0.0010889 358.8735808057104 41.033 0.40353 36.425 36.18 36.583 -4.6079 53 24 3 0 0 0 0.094149 2 24523 24523;24663 26.021 11.615 1 22573000 53521 3740 36103 36914 62162;62163 62162 0.0643225394574074 RPASRFEVL 9 Unmodified _RPASRFEVL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8056030273438 2 537.806365 1073.59818 1.0505 0.00056495 -0.77674 -0.00041773 0.27373 0.00014721 537.8058831427738 40.997 0.35487 36.389 36.244 36.599 -4.6079 39 21 2 0 0 0 0.20428 1 24662 24662 22.736 2.2827 1 15166000 53522 3740 36103 36914 62164 62164 0.0643225394574074 RPASRFEVL 9 Unmodified _RPASRFEVL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 358.873336 1073.59818 -0.25923 -9.3031E-05 2.2092 0.00079283 1.95 0.00069979 358.8743911072229 37.166 0.35019 37.188 37.048 37.398 0.021542 -0.045461 0.0014909 NaN 17.443 25 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2120200 53523 3740 36103 36914 0.0643225394574074 RPAVERLEL 9 Unmodified _RPAVERLEL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.5488586425781 3 361.548741 1081.62439 0.27466 9.9302E-05 0.14037 5.075E-05 0.41502 0.00015005 361.5488601982003 39.192 0.68212 39.192 38.62 39.302 0 53 31 3 0 0 0 0.040733 1 20950 20950 39.923 22.874 1 2891600 53524 4022 36104 36915 62165 62165 0.08684523117221943 RPAVERLEL 9 Unmodified _RPAVERLEL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.8196411132812 2 541.819473 1081.62439 0.4028 0.00021825 -0.85768 -0.00046471 -0.45488 -0.00024646 541.8190979677283 39.163 0.26968 39.163 39.012 39.282 0 20 12 2 0 0 0 0.35911 1 20968 20968 14.405 1.3629 1 3153100 53525 4022 36104 36915 62166 62166 0.08684523117221943 RPAVERLEL 9 Unmodified _RPAVERLEL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.7320861816406 3 361.548741 1081.62439 1.3533 0.0004893 -0.20049 -7.2485E-05 1.1528 0.00041681 361.54869366960435 43.157 0.25165 38.392 38.225 38.477 -4.7648 24 16 2 0 0 0 0.1735 1 26160 26160 13.615 0 1 11056000 53526 4022 36104 36915 62167 62167 0.08684523117221943 RPAVERLEL 9 Unmodified _RPAVERLEL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.819473 1081.62439 -0.20865 -0.00011305 0.37181 0.00020145 0.16316 8.8401E-05 541.8198009888089 39.152 0.3313 38.866 38.63 38.961 -0.28687 -0.14887 0.00084357 NaN 14.405 33 14 4 NaN NaN NaN NaN 0 NaN NaN 0 8717200 53527 4022 36104 36915 0.08684523117221943 RPAVGYEL 8 Unmodified _RPAVGYEL_ 0 0 0 ENST00000566525.5_1_16:771546-771968:+|nuORF;ENST00000564640.5_1_16:771244-771968:+|nuORF;ENSG00000103254|ENST00000569529|ANTKMT ENST00000566525.5_1_16:771546-771968:+|nuORF ENST00000566525.5_1_16:771546-771968:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7486572265625 2 452.747985 903.481417 0.80983 0.00036665 0.31579 0.00014297 1.1256 0.00050962 452.7480089280512 38.8 0.22056 38.8 38.66 38.88 0 14 9 2 0 0 0 0.76266 1 20732 20732 11.64 3.047 1 1211800 53528 2119 36105 36916 62168 62168 0.025815157259899024 RPAVVALHG 9 Unmodified _RPAVVALHG_ 0 0 0 REV__nc|ENSG00000197879|O00159-2|MYO1C REV__nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2771301269531 2 460.277244 918.539935 -0.15904 -7.3201E-05 0.025599 1.1783E-05 -0.13344 -6.1419E-05 460.2772372494829 37.767 0.41537 37.495 37.303 37.719 -0.27133 50 19 3 0 0 0 0.2001 1 19799 19799 23.148 0 1 43787000 + 53529 23962 36106 36917 62169 62169 0.07740617091133117 RPAVVALHG 9 Unmodified _RPAVVALHG_ 0 0 0 REV__nc|ENSG00000197879|O00159-2|MYO1C REV__nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.2778625488281 2 460.277244 918.539935 0.95369 0.00043896 -0.012931 -5.9518E-06 0.94076 0.00043301 460.27725071617914 72.365 0.49839 66.19 66.024 66.522 -6.1757 66 25 3 0 0 0 0.2001 1 47424 47424 23.148 5.0134 1 115020000 + 53530 23962 36106 36917 62170 62170 0.07740617091133117 RPAYLALL 8 Unmodified _RPAYLALL_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7849426269531 2 458.78437 915.554188 0.50406 0.00023126 -0.19428 -8.9133E-05 0.30978 0.00014212 458.78452674309165 64.161 0.28889 63.675 63.532 63.821 -0.48512 24 13 2 0 0 0 0.6895 1 35038 35038 18.135 0 1 1248700 + 53531 21295 36107 36918 62171 62171 0.09303269519409696 RPAYLALL 8 Unmodified _RPAYLALL_ 0 0 0 REV__ENSG00000155858|ENST00000286307|LSM11 REV__ENSG00000155858|ENST00000286307|LSM11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 458.78437 915.554188 0.50406 0.00023126 -0.19428 -8.9133E-05 0.30978 0.00014212 458.78452674309165 64.161 0.28889 63.675 63.532 63.821 -0.48512 -0.0091018 -6.168E-05 NaN 18.135 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1248700 + 53532 21295 36107 36918 0.09303269519409696 RPAYRKVFL 9 Unmodified _RPAYRKVFL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9017944335938 3 383.901226 1148.68185 0.029181 1.1203E-05 0.43304 0.00016624 0.46222 0.00017745 383.9013870452134 29.109 0.24072 29.139 29.009 29.25 0.030106 21 9 3 0 0 0 0.23158 1 15155 15155 14.405 2.8875 1 4799400 53533 10194 36108 36919 62172 62172 0.11345410113472099 RPCKIVEM 8 Carbamidomethyl (C),Oxidation (M) _RPC(Carbamidomethyl (C))KIVEM(Oxidation (M))_ RPC(1)KIVEM RPCKIVEM(1) RPC(68)KIVEM RPCKIVEM(68) 0 1 1 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENST00000575001.1_1_17:7211023-7213200:+|nuORF;ENST00000355068.4_1_17:7210662-7213200:+|nuORF;ENSG00000163577|ENST00000295822|EIF5A2 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.76806640625 2 524.767537 1047.52052 0.28432 0.0001492 -0.42294 -0.00022194 -0.13862 -7.2741E-05 524.7676791776394 16.769 0.39259 14.212 13.987 14.38 -2.557 193 60 4 0 0 0 0.21098 2 8702 8602;8702 68.081 13.307 1 20211000 53534 4415 36109 36920 62173;62174 62174 457 809 -0.001338433062983313 RPCKIVEM 8 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))KIVEM_ RPC(1)KIVEM RPC(46)KIVEM 0 1 0 ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENST00000575001.1_1_17:7211023-7213200:+|nuORF;ENST00000355068.4_1_17:7210662-7213200:+|nuORF;ENSG00000163577|ENST00000295822|EIF5A2 ENSG00000132507|ENST00000336458|EIF5A ENSG00000132507|ENST00000336458|EIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7702026367188 2 516.77008 1031.52561 0.43304 0.00022378 -1.3815 -0.00071394 -0.94851 -0.00049016 516.7695361255683 27.613 0.50363 24.576 24.299 24.803 -3.0365 68 25 4 0 0 0 0.38465 1 15300 15300 46.021 9.8939 1 67722000 53535 4415 36109 36921 62175 62175 457 0.01110460556333237 RPCLHGSSL 9 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))LHGSSL_ RPC(1)LHGSSL RPC(54)LHGSSL 0 1 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MSMS AL20221201_MKP_PDAC_01 4 513.7604370117188 2 513.761101 1025.50765 NaN NaN NaN NaN NaN NaN NaN 22.753 1 19.974 19.474 20.474 -2.7784 0 0 0 0.059498 1 12260 12260 53.833 13.875 1 53536 6520 36110 36922 62176 62176 642 -0.004085383741994519 RPCLLKSL 8 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))LLKSL_ RPC(1)LLKSL RPC(61)LLKSL 0 1 0 ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2 ENST00000472059.5_1_17:19558694-19578882:+|nuORF ENST00000472059.5_1_17:19558694-19578882:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 493.7943420410156 2 493.794412 985.574271 NaN NaN NaN NaN NaN NaN NaN 43.191 1 38.426 37.926 38.926 -4.7648 0 0 0 0.32286 1 26203 26203 61.357 6.5839 1 53537 1076 36111 36923 62177 62177 95 0.08090697187719798 RPCPLSPKRSR 11 Unmodified _RPCPLSPKRSR_ 0 0 0 REV__ENST00000570217.1_1_16:89972657-89984328:+|nuORF REV__ENST00000570217.1_1_16:89972657-89984328:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.9149780273438 3 432.915429 1295.72446 0.66227 0.00028671 -0.49558 -0.00021454 0.16669 7.2165E-05 432.91527161386745 26.757 0.30329 23.721 23.57 23.873 -3.0365 40 15 4 0 0 0 0.65706 1 14861 14861 8.2864 2.0521 1 15299000 + 53538 28967 36112 36924 62178 62178 0.08842437179373519 RPCPPRLLFL 10 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))PPRLLFL_ RPC(1)PPRLLFL RPC(55)PPRLLFL 0 1 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-3|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5826721191406 3 423.581387 1267.72233 1.3068 0.00055354 -0.17163 -7.27E-05 1.1352 0.00048084 423.9156009261302 95.062 0.31039 88.886 88.73 89.04 -6.1757 26 16 2 0 0 0 0.061704 1 62977 62977 55.235 32.46 1 11810000 53539 7609 36113 36925 62179 62179 737 0.09918008441559323 RPCSKVIVRF 10 Carbamidomethyl (C) _RPC(Carbamidomethyl (C))SKVIVRF_ RPC(1)SKVIVRF RPC(57)SKVIVRF 0 1 0 ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENSG00000134419|ENST00000322989|RPS15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5796813964844 3 421.244775 1260.7125 1.1839 0.00049869 1.5373 0.00064756 2.7211 0.0011463 421.2454590706135 33.378 0.21124 29.393 29.223 29.434 -3.9853 19 11 2 0 0 0 0.051728 1 19124 19124 57.477 45.959 1 18370000 53540 4606;15501 36114 36926 62180 62180 475 0.09256820436189628 RPDDKRILEF 10 Unmodified _RPDDKRILEF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2381591796875 3 430.238455 1287.69353 -0.013481 -5.8002E-06 -0.077997 -3.3557E-05 -0.091479 -3.9358E-05 430.2384510888709 40.239 0.36284 40.239 40.049 40.412 0 46 17 4 0 0 0 0.61194 1 21600 21600 10.527 6.338 1 11023000 53541 10088 36115 36927 62181 62181 0.06119562346134444 RPDDKRILEF 10 Unmodified _RPDDKRILEF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.2384338378906 3 430.238455 1287.69353 0.58333 0.00025097 -0.43518 -0.00018723 0.14815 6.3742E-05 430.2382016522747 40.495 0.35386 40.195 40.025 40.379 -0.29964 44 16 4 0 0 0 0.1989 1 21394 21394 33.821 25.535 1 8123500 53542 10088 36115 36927 62182 62182 0.06119562346134444 RPDDKRILEF 10 Unmodified _RPDDKRILEF_ 0 0 0 nc|ENSG00000198408|O60502-4|OGA;ENSG00000198408|ENST00000361464|OGA;nc|ENSG00000198408|O60502-2|OGA nc|ENSG00000198408|O60502-4|OGA nc|ENSG00000198408|O60502-4|OGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.238037109375 3 430.238455 1287.69353 0.62721 0.00026985 0.62739 0.00026993 1.2546 0.00053978 430.2388254356983 44.215 0.40081 39.363 39.117 39.517 -4.852 46 28 2 0 0 0 0.37616 2 26979 26844;26979 23.016 13.472 1 21185000 53543 10088 36115 36927 62183;62184 62184 0.06119562346134444 RPDDRSQGAII 11 Unmodified _RPDDRSQGAII_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8863525390625 3 409.886192 1226.63675 -0.58075 -0.00023804 -0.32446 -0.00013299 -0.9052 -0.00037103 409.88629068165545 26.344 0.30072 26.344 26.187 26.488 0 46 14 5 0 0 0 0.24981 1 13516 13516 24.229 12.054 1 4015700 53544 3070;16132 36116 36928 62185 62185 0.03249514789604291 RPDDRSQGAII 11 Unmodified _RPDDRSQGAII_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.3253784179688 2 614.32565 1226.63675 -0.24418 -0.00015001 -0.66429 -0.00040809 -0.90847 -0.0005581 614.3256326003785 26.336 0.17789 26.336 26.208 26.386 0 16 8 3 0 0 0 0.59643 1 13530 13530 11.518 7.9214 1 921970 53545 3070;16132 36116 36928 62186 62186 0.03249514789604291 RPDEKAIMTY 10 Oxidation (M) _RPDEKAIM(Oxidation (M))TY_ RPDEKAIM(1)TY RPDEKAIM(50)TY 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3063354492188 2 620.305538 1238.59652 -0.090841 -5.6349E-05 0.73041 0.00045308 0.63957 0.00039673 620.3061788640836 22.392 0.40846 22.392 22.224 22.633 0 78 19 5 0 0 0 0.087164 2 11433 11337;11433 49.527 13.021 1 26158000 53546 4211;16049 36117 36929 62187;62188 62188 745 -0.013231679251703099 RPDEKAIMTY 10 Oxidation (M) _RPDEKAIM(Oxidation (M))TY_ RPDEKAIM(1)TY RPDEKAIM(69)TY 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8081665039062 2 620.305538 1238.59652 -0.23014 -0.00014276 -0.18431 -0.00011433 -0.41445 -0.00025709 620.3055935352689 25.191 0.45675 22.307 22.168 22.625 -2.8831 114 37 4 0 0 0 0.027278 3 13699 13699;13811;13924 69.338 16.182 1 43596000 53547 4211;16049 36117 36929 62189;62190;62191 62189 745 -0.013231679251703099 RPDEKAIMTY 10 Unmodified _RPDEKAIMTY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.3076782226562 2 612.308081 1222.60161 0.14347 8.7849E-05 -0.089184 -5.4608E-05 0.054289 3.3241E-05 612.3079821375803 31.18 0.32811 31.18 31.031 31.359 0 38 15 3 0 0 0 0.052718 1 16211 16211 57.249 13.477 1 4993800 53548 4211;16049 36117 36930 62192 62192 -0.0007886406253874156 RPDEKAIMTY 10 Unmodified _RPDEKAIMTY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8106079101562 2 612.308081 1222.60161 0.37324 0.00022854 0.25557 0.00015649 0.62881 0.00038503 612.8097199207364 31.197 0.27602 31.094 30.984 31.26 -0.10269 13 10 2 0 0 0 0.51153 1 16192 16192 15.739 5.5881 1 1515300 53549 4211;16049 36117 36930 62193 62193 -0.0007886406253874156 RPDEKAIMTY 10 Unmodified _RPDEKAIMTY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3084716796875 2 612.308081 1222.60161 0.90033 0.00055128 -0.69121 -0.00042323 0.20911 0.00012804 612.3077595015878 34.979 0.57252 30.884 30.565 31.137 -4.0951 125 33 5 0 0 0 0.013158 3 20069 20069;20195;20312 81.915 16.442 1 134830000 53550 4211;16049 36117 36930 62194;62195;62196 62194 -0.0007886406253874156 RPDEKAIMTY 10 Unmodified _RPDEKAIMTY_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5415954589844 3 408.541146 1222.60161 1.1 0.00044941 -0.62801 -0.00025657 0.47203 0.00019284 408.5409916094026 34.912 0.59036 30.817 30.565 31.155 -4.0951 108 34 4 0 0 0 0.20195 2 20114 20114;20243 35.08 16.358 1 84267000 53551 4211;16049 36117 36930 62197;62198 62197 -0.0007886406253874156 RPDERRFAVF 10 Unmodified _RPDERRFAVF_ 0 0 0 ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11 ENST00000560046.1_1_14:24586548-24588423:+|nuORF ENST00000560046.1_1_14:24586548-24588423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.56689453125 3 431.566794 1291.67855 -0.040262 -1.7376E-05 -0.1461 -6.3053E-05 -0.18636 -8.0428E-05 431.56650612381975 39.166 0.26236 38.879 38.719 38.981 -0.28687 27 11 3 0 0 0 0.1989 1 20638 20638 33.821 23.506 1 8406600 53552 1886 36118 36931 62199 62199 0.04438115268794718 RPDERRFAVF 10 Unmodified _RPDERRFAVF_ 0 0 0 ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11 ENST00000560046.1_1_14:24586548-24588423:+|nuORF ENST00000560046.1_1_14:24586548-24588423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5669250488281 3 431.566794 1291.67855 0.30879 0.00013326 -0.45827 -0.00019777 -0.14948 -6.4511E-05 431.56656583031275 38.756 0.40334 38.767 38.578 38.981 0.011452 77 19 5 0 0 0 0.30604 2 20558 20558;20658 27.129 20.595 1 110060000 53553 1886 36118 36931 62200;62201 62200 0.04438115268794718 RPDERRFAVF 10 Unmodified _RPDERRFAVF_ 0 0 0 ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11 ENST00000560046.1_1_14:24586548-24588423:+|nuORF ENST00000560046.1_1_14:24586548-24588423:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5667419433594 3 431.566794 1291.67855 1.1626 0.00050173 0.041903 1.8084E-05 1.2045 0.00051982 431.5667169756103 42.742 0.43185 38.057 37.845 38.277 -4.6846 83 27 4 0 0 0 0.014262 2 25760 25760;25889 80.896 60.315 1 54619000 53554 1886 36118 36931 62202;62203 62202 0.04438115268794718 RPDERRFAVF 10 Unmodified _RPDERRFAVF_ 0 0 0 ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11 ENST00000560046.1_1_14:24586548-24588423:+|nuORF ENST00000560046.1_1_14:24586548-24588423:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5676879882812 3 431.566794 1291.67855 0.90468 0.00039043 0.41946 0.00018102 1.3241 0.00057145 431.56682606653817 75.812 1.0603 69.636 68.963 70.023 -6.1757 104 57 3 0 0 0 0.069578 4 49576 49440;49576;49702;49836 53.47 41.952 1 18349000 53555 1886 36118 36931 62204;62205;62206;62207 62205 0.04438115268794718 RPDGVLLTF 9 Unmodified _RPDGVLLTF_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2910766601562 2 509.290017 1016.56548 0.3887 0.00019796 0.18175 9.2563E-05 0.57045 0.00029052 509.29030942071955 67.943 0.25858 67.461 67.299 67.558 -0.48219 20 11 2 0 0 0 0.18144 1 37102 37102 24.991 3.454 1 1207800 53556 1399 36119 36932 62208 62208 0.05786046822879598 RPDKKKILF 9 Unmodified _RPDKKKILF_ 0 0 0 ENSG00000197265|ENST00000355904|GTF2E2;ENST00000522833.5_1_8:30442658-30469842:-|nuORF ENSG00000197265|ENST00000355904|GTF2E2 ENSG00000197265|ENST00000355904|GTF2E2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.8724975585938 3 382.244881 1143.71281 0.71205 0.00027218 0.5276 0.00020167 1.2396 0.00047385 382.2451093397438 24.429 0.26097 21.601 21.534 21.795 -2.8273 20 14 2 0 0 0 0.18094 1 13312 13312 20.415 14.683 1 1975900 53557 9934 36120 36933 62209 62209 0.14670563427694105 RPDKRFRLAL 10 Unmodified _RPDKRFRLAL_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5948486328125 3 424.594684 1270.76222 0.12703 5.3938E-05 0.061833 2.6254E-05 0.18887 8.0192E-05 424.5947049905063 34.438 0.1937 34.466 34.367 34.561 0.027405 14 8 2 0 0 0 0.67755 1 18141 18141 5.4027 3.3167 1 1079200 53558 4825 36121 36934 62210 62210 0.13767271436518058 RPDKRFRLAL 10 Unmodified _RPDKRFRLAL_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7;ENST00000582274.1_1_17:61628029-61629753:+|nuORF ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.595458984375 3 424.594684 1270.76222 1.4305 0.00060738 0.34847 0.00014796 1.779 0.00075534 424.5947485336974 89.212 0.37328 83.036 82.846 83.22 -6.1757 53 20 3 0 0 0 0.2667 1 58897 58897 29.437 24.39 1 61834000 53559 4825 36121 36934 62211 62211 0.13767271436518058 RPDLARRYL 9 Unmodified _RPDLARRYL_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2284851074219 3 387.228001 1158.66217 0.0048809 1.89E-06 1.3542 0.0005244 1.3591 0.00052629 387.2283218385588 29.074 0.21869 29.104 29.009 29.228 0.030106 14 8 2 0 0 0 0.36964 1 15172 15172 18.373 8.8291 1 4459300 53560 1587 36122 36935 62212 62212 0.08919034102700607 RPDLARRYL 9 Unmodified _RPDLARRYL_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 387.228001 1158.66217 1.1269 0.00043636 0.96964 0.00037547 2.0965 0.00081183 387.2283260385542 32.651 0.32724 28.795 28.618 28.945 -3.8562 -0.15479 -0.0002283 NaN 18.373 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 8139000 53561 1587 36122 36935 0.08919034102700607 RPDLKRQSLL 10 Unmodified _RPDLKRQSLL_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MSMS AL20221201_MKP_PDAC_01 4 409.2503967285156 3 409.250695 1224.73025 NaN NaN NaN NaN NaN NaN NaN 32.155 1 28.399 27.899 28.899 -3.756 0 0 0 0.33973 1 18288 18288 34.79 18.516 1 53562 9454 36123 36936 62213 62213 0.12687858962704013 RPDNILVKL 9 Unmodified _RPDNILVKL_ 0 0 0 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.5574340820312 3 356.557236 1066.64988 -0.31455 -0.00011216 4.3418 0.0015481 4.0272 0.0014359 356.5590696816189 36.962 0.33752 36.983 36.816 37.153 0.021542 39 15 3 0 0 0 0.36964 1 19602 19602 9.544 1.3884 1 3640700 53563 10393 36124 36937 62214 62214 0.11921997639660731 RPDNILVKL 9 Unmodified _RPDNILVKL_ 0 0 0 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 ENSG00000206113|ENST00000635017|CFAP99 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5579223632812 3 356.557236 1066.64988 0.89118 0.00031776 0.55666 0.00019848 1.4478 0.00051624 356.5574490782561 41.366 0.26686 36.758 36.566 36.833 -4.6079 25 16 2 0 0 0 0.1773 1 24864 24864 18.373 8.0579 1 12111000 53564 10393 36124 36937 62215 62215 0.11921997639660731 RPDPRLKWAVL 11 Unmodified _RPDPRLKWAVL_ 0 0 0 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 MSMS AL20221201_MKP_PDAC_01 4 451.2718811035156 3 450.93834 1349.79319 NaN NaN NaN NaN NaN NaN NaN 31.272 1 27.577 27.077 28.077 -3.6958 0 0 0 0.83655 1 17697 17697 10.315 2.3698 1 53565 7751 36125 36938 62216 62216 0.1322842475071866 RPDQGINIY 9 Unmodified _RPDQGINIY_ 0 0 0 nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2805786132812 2 538.28018 1074.54581 0.59542 0.0003205 0.62106 0.00033431 1.2165 0.00065481 538.2802232817008 38.641 0.30729 38.641 38.44 38.747 0 29 14 3 0 0 0 0.091924 1 20629 20629 34.932 12.196 1 2999500 53566 16079 36126 36939 62217 62217 0.011516708121462216 RPDQGINIY 9 Unmodified _RPDQGINIY_ 0 0 0 nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 nc|ENSG00000099204|O14639-4|ABLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2809448242188 2 538.28018 1074.54581 0.55417 0.0002983 0.39895 0.00021475 0.95312 0.00051305 538.2802958408843 43.711 0.37051 38.946 38.709 39.079 -4.7648 31 22 2 0 0 0 0.032796 1 26558 26558 53.833 11.993 1 8803300 53567 16079 36126 36939 62218 62218 0.011516708121462216 RPDRGRLGF 9 Unmodified _RPDRGRLGF_ 0 0 0 ENST00000533863.1_2_11:117073729-117073927:+|nuORF;ENSG00000149591|ENST00000392951|TAGLN ENST00000533863.1_2_11:117073729-117073927:+|nuORF ENST00000533863.1_2_11:117073729-117073927:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5376281738281 3 358.536946 1072.58901 0.63305 0.00022697 1.2774 0.00045801 1.9105 0.00068498 358.5373537269391 25.323 0.25075 22.44 22.28 22.531 -2.8831 33 16 3 0 0 0 0.36964 1 13835 13835 18.373 6.8784 1 5568300 53568 6023 36127 36940 62219 62219 0.05561905380091048 RPDRRGLEPTG 11 Unmodified _RPDRRGLEPTG_ 0 0 0 nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-2|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3408813476562 2 627.339092 1252.66363 0.82019 0.00051454 0.49722 0.00031193 1.3174 0.00082646 627.3393039921912 72.052 0.39577 65.876 65.745 66.141 -6.1757 35 20 2 0 0 0 0.50515 1 47115 47115 16.149 3.1066 1 25228000 53569 4155 36128 36941 62220 62220 0.04740623400766708 RPDRRGLEPTG 11 Unmodified _RPDRRGLEPTG_ 0 0 0 nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-2|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 627.339092 1252.66363 0.24324 0.00015259 -1.5658 -0.00098226 -1.3225 -0.00082967 627.3384667510499 65.908 0.21891 65.908 65.776 65.995 0 0.035216 -0.0021192 NaN 16.149 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1712400 53570 4155 36128 36941 0.04740623400766708 RPDRRGLEPTG 11 Unmodified _RPDRRGLEPTG_ 0 0 0 nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-2|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 nc|ENSG00000129646|Q9H0J4|QRICH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.339092 1252.66363 -0.026027 -1.6328E-05 0.09632 6.0425E-05 0.070293 4.4097E-05 627.339370316389 66.318 0.31336 65.835 65.711 66.025 -0.48323 -0.03824 -3.383E-05 NaN 16.149 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4627700 53571 4155 36128 36941 0.04740623400766708 RPDSIIQQENY 11 Unmodified _RPDSIIQQENY_ 0 0 0 REV__ENSG00000153237|ENST00000283233|CCDC148 REV__ENSG00000153237|ENST00000283233|CCDC148 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8932800292969 3 454.893124 1361.65754 NaN NaN NaN NaN NaN NaN NaN 16.251 1 16.256 15.756 16.756 0.0050564 0 0 0 0.94307 1 8140 8140 0.08335 0 1 + 53572 21163 36129 36942 62221 62221 -0.008819396213311848 RPDSRLGKTEL 11 Unmodified _RPDSRLGKTEL_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.90869140625 3 424.573726 1270.69935 0.42016 0.00017839 1.0573 0.0004489 1.4775 0.00062729 424.5743366105367 23.729 0.36448 20.902 20.708 21.073 -2.8273 35 22 2 0 0 0 0.27191 1 12802 12802 28.271 2.2731 1 6574800 53573 8979 36130 36943 62222 62222 0.07482660857795054 RPDSRLGKTEL 11 Unmodified _RPDSRLGKTEL_ 0 0 0 ENSG00000181555|ENST00000409792|SETD2;nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2 ENSG00000181555|ENST00000409792|SETD2 ENSG00000181555|ENST00000409792|SETD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 424.573726 1270.69935 -0.40232 -0.00017081 -0.97002 -0.00041184 -1.3723 -0.00058266 424.90753881850657 20.997 0.024284 20.997 20.984 21.008 0 0.047528 -0.0019829 NaN 28.271 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 354870 53574 8979 36130 36943 0.07482660857795054 RPDSTHLLVF 10 Unmodified _RPDSTHLLVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8250732421875 2 592.824755 1183.63496 -0.43549 -0.00025817 1.8791 0.001114 1.4436 0.00085579 592.8264882547286 56.619 0.29827 56.133 56.01 56.309 -0.48554 43 19 3 0 0 0 0.14688 1 30718 30718 40.239 13.971 1 20466000 53575 4412 36131 36944 62223 62223 0.05048505771651435 RPDSTHLLVF 10 Unmodified _RPDSTHLLVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8866882324219 3 395.552262 1183.63496 -0.45257 -0.00017901 -0.51836 -0.00020504 -0.97093 -0.00038405 395.5520867633154 56.593 0.31738 56.107 56.032 56.349 -0.48554 41 18 3 0 0 0 0.10406 2 30726 30726;30832 33.821 26.344 1 8989000 53576 4412 36131 36944 62224;62225 62224 0.05048505771651435 RPDSTHLLVF 10 Unmodified _RPDSTHLLVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5521545410156 3 395.552262 1183.63496 -0.34776 -0.00013756 0.16291 6.4439E-05 -0.18486 -7.312E-05 395.5522323857523 56.325 0.32431 56.256 56.075 56.4 -0.068737 24 16 2 0 0 0 0.38225 1 30612 30612 15.538 13.104 1 5252000 53577 4412 36131 36944 62226 62226 0.05048505771651435 RPDSTHLLVF 10 Unmodified _RPDSTHLLVF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 395.5529479980469 3 395.552262 1183.63496 NaN NaN NaN NaN NaN NaN NaN 61.445 1 55.297 54.797 55.797 -6.1478 0 0 0 0.42631 1 39579 39579 20.871 11.895 1 53578 4412 36131 36944 62227 62227 0.05048505771651435 RPDVAKRLSL 10 Unmodified _RPDVAKRLSL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5718078613281 3 385.571657 1153.69314 -0.059359 -2.2887E-05 0.51402 0.00019819 0.45466 0.00017531 385.57181230459463 29.734 0.50484 29.764 29.632 30.137 0.030106 30 10 4 0 0 0 0.017587 2 15503 15474;15503 77.867 50.779 1 10372000 53579 4988 36132 36945 62228;62229 62229 0.12244187416945351 RPDVAKRLSL 10 Unmodified _RPDVAKRLSL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5719909667969 3 385.571657 1153.69314 1.7526 0.00067575 -0.2705 -0.0001043 1.4821 0.00057145 385.5713693115087 33.797 0.52008 29.812 29.525 30.045 -3.9853 74 28 4 0 0 0 0.056827 2 19381 19260;19381 56.328 39.279 1 36786000 53580 4988 36132 36945 62230;62231 62231 0.12244187416945351 RPDVGRYLREL 11 Unmodified _RPDVGRYLREL_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.5926818847656 3 458.59312 1372.75753 NaN NaN NaN NaN NaN NaN NaN 48.775 1 48.404 47.904 48.904 -0.37172 0 0 0 0.4275 1 26188 26188 27.289 10.451 1 53581 10431 36133 36946 62232 62232 0.08606342503094311 RPDVGRYLREL 11 Unmodified _RPDVGRYLREL_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.5933837890625 3 458.59312 1372.75753 0.53985 0.00024757 0.19822 9.0903E-05 0.73807 0.00033847 458.59313693454504 48.499 0.29075 48.456 48.3 48.591 -0.04369 52 14 4 0 0 0 0.048301 2 26118 26118;26224 51.264 30.023 1 24403000 53582 10431 36133 36946 62233;62234 62233 0.08606342503094311 RPDVGRYLREL 11 Unmodified _RPDVGRYLREL_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.5935974121094 3 458.59312 1372.75753 1.2728 0.00058371 0.03337 1.5303E-05 1.3062 0.00059902 458.59315018403606 86.629 0.66268 80.453 80.037 80.699 -6.1757 47 35 2 0 0 0 0.018828 3 57061 56933;57061;57185 58.398 28.165 1 21055000 53583 10431 36133 36946 62235;62236;62237 62236 0.08606342503094311 RPDVRCIIH 9 Unmodified _RPDVRCIIH_ 0 0 0 nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2;nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2 nc|ENSG00000075340|P35612-2|ADD2 nc|ENSG00000075340|P35612-2|ADD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1108.118041992188 1 1108.60441 1107.59713 -0.16356 -0.00018132 2.694 0.0029866 2.5305 0.0028053 1108.6076641277268 23.297 0.13148 23.31 23.185 23.317 0.012396 8 6 2 0 0 0 0.21564 1 11818 11818 3.9444 0.66309 1 3375000 53584 1152 36134 36947 62238 62238 0.04763716305183152 RPDWVPLNL 9 Unmodified _RPDWVPLNL_ 0 0 0 REV__ENSG00000218823|ENST00000404991|PAPOLB;REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG REV__ENSG00000218823|ENST00000404991|PAPOLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1110.616455078125 1 1109.61021 1108.60293 -0.11258 -0.00012492 -2.4187 -0.0026839 -2.5313 -0.0028088 1110.6131121569003 23.679 0.1045 23.691 23.645 23.75 0.012396 6 4 2 0 0 0 0.59532 1 12102 12102 1.6526 0 1 8785300 + 53585 24354;18980 36135 36948 62239 62239 0.052971380884855535 RPDYRNITF 9 Unmodified _RPDYRNITF_ 0 0 0 nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR nc|ENSG00000116984|Q99707-2|MTR nc|ENSG00000116984|Q99707-2|MTR MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5403747558594 3 394.540245 1180.59891 0.75056 0.00029613 1.211 0.00047779 1.9616 0.00077392 394.54023028365486 44.881 0.40016 40.029 39.893 40.294 -4.852 30 26 2 0 0 0 0.1685 1 27572 27572 19.626 3.0601 1 9459900 53586 3272 36136 36949 62240 62240 0.015830485947844863 RPEAKTMP 8 Unmodified _RPEAKTMP_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1;ENST00000511439.5_1_3:133368770-133375581:-|nuORF ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MSMS AL20221201_MKP_PDAC_01 4 465.2463073730469 2 465.247295 928.480036 NaN NaN NaN NaN NaN NaN NaN 49.142 1 43.746 43.246 44.246 -5.3961 0 0 0 0.80403 1 30678 30678 23.148 8.5667 1 53587 7064 36137 36950 62241 62241 0.012935583655917071 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.8147583007812 2 565.813856 1129.61316 0.43234 0.00024463 -0.10026 -5.6727E-05 0.33209 0.0001879 565.8138369762754 39.237 0.30437 39.237 39.096 39.4 0 50 14 4 0 0 0 0.0098373 2 20976 20976;21083 87.258 37.704 1 20476000 53588 590 36138 36951 62242;62243 62242 0.05353701023091162 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5457458496094 3 377.544996 1129.61316 0.18357 6.9304E-05 -0.01132 -4.2736E-06 0.17225 6.5031E-05 377.5450509791015 39.253 0.45704 39.253 39.012 39.469 0 60 21 4 0 0 0 0.024189 3 20981 20981;20992;21098 59.368 44.411 1 14657000 53589 590 36138 36951 62244;62245;62246 62244 0.05353701023091162 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.8138427734375 2 565.813856 1129.61316 0.12655 7.1605E-05 0.19349 0.00010948 0.32005 0.00018109 565.8140231619934 39.639 0.29628 39.342 39.154 39.45 -0.29716 31 13 3 0 0 0 0.02676 1 20872 20872 61.602 32.52 1 6033100 53590 590 36138 36951 62247 62247 0.05353701023091162 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5446472167969 3 377.544996 1129.61316 -0.040691 -1.5363E-05 0.11325 4.2755E-05 0.072554 2.7392E-05 377.54505169576373 39.614 0.27854 39.317 39.133 39.412 -0.29716 28 12 3 0 0 0 0.082934 1 20874 20874 37.075 22.117 1 4014300 53591 590 36138 36951 62248 62248 0.05353701023091162 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8145751953125 2 565.813856 1129.61316 0.72014 0.00040747 -0.13497 -7.6365E-05 0.58518 0.0003311 565.8138870508383 43.967 0.44806 39.202 38.967 39.415 -4.7648 71 28 3 0 0 0 0.024507 2 26794 26663;26794 72.968 36.462 1 64105000 53592 590 36138 36951 62249;62250 62250 0.05353701023091162 RPEDLPIKY 9 Unmodified _RPEDLPIKY_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5455932617188 3 377.544996 1129.61316 1.0556 0.00039855 -0.057645 -2.1764E-05 0.998 0.00037679 377.5450877239681 43.959 0.43061 39.194 38.967 39.398 -4.7648 68 27 3 0 0 0 0.082934 2 26818 26691;26818 37.075 19.804 1 72000000 53593 590 36138 36951 62251;62252 62252 0.05353701023091162 RPEDQRLIY 9 Unmodified _RPEDQRLIY_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.2154846191406 3 397.21565 1188.62512 -0.22795 -9.0545E-05 0.22964 9.1218E-05 0.0016944 6.7303E-07 397.2157314926832 31.034 0.26001 31.034 30.892 31.152 0 31 12 3 0 0 0 0.20389 1 16128 16128 22.775 15.166 1 5628100 53594 730 36139 36952 62253 62253 0.038353177662884264 RPEDQRLIY 9 Unmodified _RPEDQRLIY_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.3195190429688 2 595.319837 1188.62512 -0.18382 -0.00010943 0.23472 0.00013973 0.050899 3.0301E-05 595.3199379701681 31.03 0.24061 31.03 30.912 31.152 0 27 11 3 0 0 0 0.020676 1 16139 16139 59.368 40.111 1 5068300 53595 730 36139 36952 62254 62254 0.038353177662884264 RPEDQRLIY 9 Unmodified _RPEDQRLIY_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2151794433594 3 397.21565 1188.62512 1.2518 0.00049723 -0.71817 -0.00028527 0.53362 0.00021196 397.21551348851347 34.175 0.35611 30.19 29.984 30.34 -3.9853 55 19 4 0 0 0 0.10134 2 19616 19616;19746 32.898 21.403 1 30211000 53596 730 36139 36952 62255;62256 62255 0.038353177662884264 RPEDQRLIY 9 Unmodified _RPEDQRLIY_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3196411132812 2 595.319837 1188.62512 0.80674 0.00048027 2.2984 0.0013683 3.1051 0.0018485 595.3221951646241 34.145 0.55895 30.16 29.747 30.306 -3.9853 51 30 3 0 0 0 0.0087399 1 19658 19658 96.367 41.593 1 14308000 53597 730 36139 36952 62257 62257 0.038353177662884264 RPEECDCHKI 10 Unmodified _RPEECDCHKI_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.1834106445312 3 410.518235 1228.53288 NaN NaN NaN NaN NaN NaN NaN 20.821 1 20.831 20.331 21.331 0.010553 0 0 0 0.99091 1 10632 10632 0.69767 0.19171 1 53598 9841 36140 36953 62258 62258 -0.07224851633918661 RPEECDCHKI 10 Unmodified _RPEECDCHKI_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5187377929688 3 410.518235 1228.53288 1.0953 0.00044964 1.4624 0.00060033 2.5577 0.00105 410.5189077428514 41.998 0.34921 37.313 37.143 37.492 -4.6846 29 21 2 0 0 0 0.62068 1 25302 25302 5.7834 0.48655 1 7534800 53599 9841 36140 36953 62259 62259 -0.07224851633918661 RPEERLIRL 9 Unmodified _RPEERLIRL_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.9101867675781 3 394.57529 1180.70404 -0.23213 -9.1591E-05 0.11227 4.4299E-05 -0.11986 -4.7292E-05 394.57548675643466 33.679 0.45313 33.52 33.196 33.649 -0.15918 43 18 4 0 0 0 0.094905 1 17537 17537 34.222 4.7846 1 10522000 53600 8037 36141 36954 62260 62260 0.12091589791225488 RPEESRMRL 9 Unmodified _RPEESRMRL_ 0 0 0 nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 nc|ENSG00000139436|Q14161-9|GIT2 nc|ENSG00000139436|Q14161-9|GIT2 MSMS AL20221201_MKP_PDAC_01 4 391.8758544921875 3 391.876751 1172.60842 NaN NaN NaN NaN NaN NaN NaN 20.041 1 17.385 16.885 17.885 -2.6564 0 0 0 0.40636 1 10657 10657 19.626 9.3107 1 53601 5156 36142 36955 62261 62261 0.02902493608689838 RPEHHNLAF 9 Unmodified _RPEHHNLAF_ 0 0 0 nc|ENSG00000214655|A7E2V4-5|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ENST00000431225.5_1_10:75551812-75554405:+|nuORF nc|ENSG00000214655|A7E2V4-5|ZSWIM8 nc|ENSG00000214655|A7E2V4-5|ZSWIM8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1935119628906 3 374.193068 1119.55738 0.70163 0.00026255 0.87908 0.00032895 1.5807 0.00059149 374.1935531543302 23.469 0.27913 20.642 20.493 20.772 -2.8273 25 16 2 0 0 0 0.43515 1 12676 12676 10.899 6.0019 1 2844100 53602 10501 36143 36956 62262 62262 0.0023791262613030995 RPEIFSDPNLI 11 Unmodified _RPEIFSDPNLI_ 0 0 0 REV__ENST00000568207.5_1_15:75315958-75337059:+|nuORF REV__ENST00000568207.5_1_15:75315958-75337059:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.233642578125 3 434.23471 1299.6823 1.2554 0.00054515 0.16183 7.0273E-05 1.4173 0.00061542 434.56944159405646 20.313 0.27585 17.62 17.525 17.801 -2.693 35 15 3 0 0 0 0.59689 1 10797 10797 6.2344 0 1 3921000 + 53603 28940 36144 36957 62263 62263 0.044447402520063406 RPEKPHKPM 9 Unmodified _RPEKPHKPM_ 0 0 0 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 REV__nc|ENSG00000123200|Q5T200-2|ZC3H13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8760375976562 3 373.874571 1118.60188 1.3807 0.00051622 0.077592 2.901E-05 1.4583 0.00054523 373.8745735407005 32.604 0.45066 28.748 28.494 28.945 -3.8562 41 23 3 0 0 0 0.5029 1 18534 18534 7.609 4.2893 1 14085000 + 53604 19376 36145 36958 62264 62264 0.04732600447960067 RPELILEWA 9 Unmodified _RPELILEWA_ 0 0 0 REV__ENST00000379484.9_1_X:21901709-21902018:+|nuORF REV__ENST00000379484.9_1_X:21901709-21902018:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2326965332031 3 376.213358 1125.61824 -0.14678 -5.522E-05 2.1484 0.00080825 2.0016 0.00075303 376.21468069614787 37.408 0.13672 37.429 37.327 37.464 0.021545 9 5 2 0 0 0 0.20358 1 19831 19831 6.6304 1.7334 1 1021200 + 53605 26286 36146 36959 62265 62265 0.06046004885729417 RPELRRPGV 9 Unmodified _RPELRRPGV_ 0 0 0 ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5529174804688 3 360.552597 1078.63596 1.8614 0.00067113 -1.2518 -0.00045132 0.60964 0.00021981 360.5521417511596 21.236 0.30578 18.543 18.339 18.645 -2.693 42 18 3 0 0 0 0.20507 1 11336 11336 22.658 9.0432 1 10007000 53606 5487 36147 36960 62266 62266 0.0997876493122476 RPELVMQYR 9 Unmodified _RPELVMQYR_ 0 0 0 REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.881103515625 3 397.881614 1190.62301 -0.24652 -9.8085E-05 -0.88412 -0.00035178 -1.1306 -0.00044986 397.8812600314547 36.998 0.465 36.748 36.623 37.088 -0.2497 28 19 3 0 0 0 0.43463 1 19461 19461 7.1017 4.8189 1 1580400 + 53607 20852 36148 36961 62267 62267 0.0353256575681371 RPELVMQYR 9 Unmodified _RPELVMQYR_ 0 0 0 REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 397.881614 1190.62301 -0.42522 -0.00016919 -0.72901 -0.00029006 -1.1542 -0.00045925 397.8812652749972 36.695 0.10592 36.716 36.661 36.767 0.021545 0.030908 6.099E-05 NaN 7.1017 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 555270 + 53608 20852 36148 36961 0.0353256575681371 RPELVMQYR 9 Unmodified _RPELVMQYR_ 0 0 0 REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 397.881614 1190.62301 0.66647 0.00026518 -0.12309 -4.8976E-05 0.54338 0.0002162 398.21577502223084 41.2 0.2251 36.592 36.513 36.738 -4.6079 -0.093756 0.00078424 NaN 7.1017 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 16819000 + 53609 20852 36148 36961 0.0353256575681371 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8854064941406 3 350.885464 1049.63456 0.053205 1.8669E-05 0.11077 3.8866E-05 0.16397 5.7535E-05 350.8854814262497 37.484 0.29141 37.484 37.333 37.625 0 28 15 2 0 0 0 0.011291 1 19954 19954 62.869 28.647 1 4776400 53610 9767;6130 36149 36962 62268 62268 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.824951171875 2 525.824558 1049.63456 -0.12643 -6.6481E-05 -1.1275 -0.00059288 -1.254 -0.00065936 525.8238788176936 37.745 0.48199 37.474 37.279 37.761 -0.27133 86 22 5 0 0 0 0.012668 2 19773 19773;19881 72.968 36.841 1 326250000 53611 9767;6130 36149 36962 62269;62270 62269 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.8857116699219 3 350.885464 1049.63456 -0.064551 -2.265E-05 0.074217 2.6042E-05 0.0096654 3.3915E-06 350.88547987896237 37.766 0.50333 37.495 37.279 37.782 -0.27133 82 23 5 0 0 0 0.0039711 2 19786 19786;19893 101.54 53.949 1 132170000 53612 9767;6130 36149 36962 62271;62272 62271 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8250732421875 2 525.824558 1049.63456 -0.16126 -8.4794E-05 0.3935 0.00020691 0.23224 0.00012212 525.8247501605148 37.417 0.42208 37.439 37.216 37.639 0.021545 68 19 5 0 0 0 0.012668 2 19787 19787;19892 72.968 36.841 1 104410000 53613 9767;6130 36149 36962 62273;62274 62273 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8855285644531 3 350.885464 1049.63456 -0.24072 -8.4466E-05 0.80515 0.00028252 0.56443 0.00019805 350.88579924295635 37.41 0.39812 37.431 37.24 37.639 0.021545 60 18 5 0 0 0 0.0087807 2 19903 19799;19903 88.364 53.432 1 42550000 53614 9767;6130 36149 36962 62275;62276 62276 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8245849609375 2 525.824558 1049.63456 0.74898 0.00039383 -0.29066 -0.00015284 0.45832 0.00024099 525.8244757753714 42.118 0.47731 37.433 37.2 37.678 -4.6846 78 29 4 0 0 0 0.013609 2 25295 25295;25426 70.332 39.695 1 72802000 53615 9767;6130 36149 36962 62277;62278 62277 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8860473632812 3 350.885464 1049.63456 1.4196 0.00049811 -0.43155 -0.00015142 0.98803 0.00034669 350.8854657559465 42.108 0.50903 37.423 37.2 37.709 -4.6846 94 31 4 0 0 0 0.0089732 2 25427 25297;25427 70.929 42.434 1 71037000 53616 9767;6130 36149 36962 62279;62280 62280 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8248291015625 2 525.824558 1049.63456 0.98139 0.00051604 -0.5148 -0.00027069 0.46659 0.00024535 525.8242870727142 72.37 0.51825 66.194 66.024 66.542 -6.1757 91 26 4 0 0 0 0.05483 3 47517 47289;47397;47517 43.772 19.752 1 642830000 53617 9767;6130 36149 36962 62281;62282;62283 62283 0.11173130842439605 RPELVRPAL 9 Unmodified _RPELVRPAL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8860168457031 3 350.885464 1049.63456 1.6407 0.00057571 -0.094081 -3.3012E-05 1.5467 0.0005427 350.88543240483835 72.416 0.51825 66.241 66.024 66.542 -6.1757 92 26 4 0 0 0 0.0082548 3 47290 47290;47398;47518 79.427 42.352 1 337510000 53618 9767;6130 36149 36962 62284;62285;62286 62284 0.11173130842439605 RPENRSFYL 9 Unmodified _RPENRSFYL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5397033691406 3 394.540245 1180.59891 -0.42534 -0.00016781 -0.38762 -0.00015293 -0.81296 -0.00032075 394.54014116298424 36.511 0.23079 36.262 36.152 36.383 -0.2497 18 10 2 0 0 0 0.094149 1 19152 19152 26.021 15.197 1 4688200 53619 5296 36150 36963 62287 62287 0.01583048594829961 RPENRSFYL 9 Unmodified _RPENRSFYL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3079223632812 2 591.306729 1180.59891 -0.43431 -0.00025681 1.8857 0.001115 1.4514 0.00085823 591.308198009214 36.507 0.18412 36.257 36.152 36.336 -0.2497 13 8 2 0 0 0 0.40476 1 19191 19191 12.241 1.4167 1 2292100 53620 5296 36150 36963 62288 62288 0.01583048594829961 RPENRSFYL 9 Unmodified _RPENRSFYL_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5414733886719 3 394.540245 1180.59891 1.0718 0.00042285 0.094075 3.7116E-05 1.1658 0.00045997 394.5402546708163 39.418 0.3159 34.967 34.825 35.141 -4.4509 36 18 2 0 0 0 0.11784 1 23371 23371 23.801 17.171 1 11876000 53621 5296 36150 36963 62289 62289 0.01583048594829961 RPETGSWVF 9 Unmodified _RPETGSWVF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7693481445312 2 539.769448 1077.52434 -0.38172 -0.00020604 1.24 0.00066929 0.85824 0.00046325 539.7701895146074 56.733 0.32593 56.248 56.153 56.479 -0.48554 33 15 3 0 0 0 0.15471 1 30804 30804 27.629 11.782 1 6102800 53622 2734 36151 36964 62290 62290 -0.011317142165808036 RPEYEELSPL 10 Unmodified _RPEYEELSPL_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MSMS AL20221201_MKP_PDAC_01 4 411.5422058105469 3 411.543432 1231.60847 NaN NaN NaN NaN NaN NaN NaN 37.116 1 32.833 32.333 33.333 -4.2835 0 0 0 0.92825 1 21751 21751 3.5871 0 1 + 53623 24007 36152 36965 62291 62291 0.0019277208966741455 RPEYREDF 8 Unmodified _RPEYREDF_ 0 0 0 nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA nc|ENSG00000162599|Q12857-2|NFIA nc|ENSG00000162599|Q12857-2|NFIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.263671875 2 556.261988 1110.50942 0.4043 0.0002249 2.4723 0.0013752 2.8766 0.0016001 556.2634518490506 69.882 0.27385 69.882 69.636 69.91 0 18 12 2 0 0 0 0.79783 1 38896 38896 7.9102 0.62092 1 1301300 53624 6878 36153 36966 62292 62292 -0.04141206084591431 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2560424804688 2 543.256174 1084.49779 0.23093 0.00012545 -0.1191 -6.4701E-05 0.11183 6.0754E-05 543.256003564364 63.016 0.40419 62.53 62.346 62.75 -0.48617 63 19 5 0 0 0 0.018301 2 34318 34318;34421 65.235 27.084 1 83970000 53625 887 36154 36967 62293;62294 62293 -0.04107403107900609 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2560424804688 2 543.256174 1084.49779 0.52278 0.000284 0.048771 2.6495E-05 0.57155 0.0003105 543.2561264883412 68.097 0.66325 61.921 61.657 62.32 -6.1757 95 39 3 0 0 0 0.044011 1 44432 44432 47.749 47.749 1 100180000 53626 887 36154 36967 62295 62295 -0.04107403107900609 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2567138671875 2 543.256174 1084.49779 0.93534 0.00050813 -1.0135 -0.00055057 -0.078118 -4.2438E-05 543.2571441693867 71.966 0.67888 65.79 65.345 66.024 -6.1757 63 36 3 0 0 0 0.018301 2 47196 47043;47196 65.235 22.075 1 38168000 53627 887 36154 36967 62296;62297 62297 -0.04107403107900609 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MSMS AL20221201_MKP_PDAC_01 4 543.2562255859375 2 543.256174 1084.49779 NaN NaN NaN NaN NaN NaN NaN 72.403 1 66.227 65.727 66.727 -6.1757 0 0 0 0.083082 1 47371 47371 47.749 20.865 1 53628 887 36154 36967 62298 62298 -0.04107403107900609 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MSMS AL20221201_MKP_PDAC_01 4 543.2573852539062 2 543.256174 1084.49779 NaN NaN NaN NaN NaN NaN NaN 72.953 1 66.777 66.277 67.277 -6.1757 0 0 0 0.15549 1 47719 47719 36.127 9.2434 1 53629 887 36154 36967 62299 62299 -0.04107403107900609 RPFAGFEDF 9 Unmodified _RPFAGFEDF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 543.256174 1084.49779 0.30724 0.00016691 1.4273 0.0007754 1.7346 0.00094231 543.2573038117187 62.666 0.24641 62.645 62.506 62.752 -0.021614 0.057235 0.0015734 NaN 65.235 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4081900 53630 887 36154 36967 -0.04107403107900609 RPFASGANFEY 11 Unmodified _RPFASGANFEY_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.7969970703125 2 629.796195 1257.57784 0.44092 0.00027769 0.92442 0.00058219 1.3653 0.00085988 629.7964073528344 46.591 0.23715 46.591 46.481 46.718 0 22 10 3 0 0 0 0.24981 1 25483 25483 29.437 8.9835 1 2206900 53631 4031 36155 36968 62300 62300 -0.04064961504718667 RPFASGANFEY 11 Unmodified _RPFASGANFEY_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.7960205078125 2 629.796195 1257.57784 0.40715 0.00025642 -0.30986 -0.00019515 0.097294 6.1275E-05 629.7958245027447 46.949 0.35172 46.612 46.424 46.775 -0.33664 43 17 3 0 0 0 0.038834 2 25099 25099;25208 53.317 32.863 1 41477000 53632 4031 36155 36968 62301;62302 62301 -0.04064961504718667 RPFASGANFEY 11 Unmodified _RPFASGANFEY_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.7946166992188 2 629.796195 1257.57784 1.4149 0.00089107 -3.3705 -0.0021227 -1.9556 -0.0012317 629.7931725897569 46.679 0.20553 46.645 46.548 46.753 -0.033421 19 9 3 0 0 0 0.58349 1 25166 25166 12.175 1.3752 1 2989700 53633 4031 36155 36968 62303 62303 -0.04064961504718667 RPFASGANFEY 11 Unmodified _RPFASGANFEY_ 0 0 0 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 ENSG00000127884|ENST00000368547|ECHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.2969970703125 2 629.796195 1257.57784 0.61064 0.00038458 1.4638 0.00092188 2.0744 0.0013065 629.796420749544 52.434 0.44053 46.7 46.469 46.91 -5.7345 75 24 4 0 0 0 1.3203E-08 2 33004 33004;33124 107.1 52.326 1 175070000 53634 4031 36155 36968 62304;62305 62304 -0.04064961504718667 RPFASYRSAR 10 Unmodified _RPFASYRSAR_ 0 0 0 REV__ENST00000524657.1_1_11:67020024-67022523:+|nuORF REV__ENST00000524657.1_1_11:67020024-67022523:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.7009887695312 3 404.219506 1209.63669 -0.53459 -0.00021609 -1.2497 -0.00050517 -1.7843 -0.00072126 404.21876717791605 18.097 0.060598 18.111 18.092 18.153 0.013866 10 9 2 0 0 0 0.23898 1 9040 9040 4.7159 1.9807 1 352470 + 53635 28333 36156 36969 62306 62306 0.04025559580281879 RPFDLVIPF 9 Unmodified _RPFDLVIPF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3189086914062 2 552.316035 1102.61752 1.9732 0.0010898 1.158 0.00063957 3.1311 0.0017294 552.316612646468 93.942 0.50422 93.96 93.765 94.269 0.017967 49 19 3 0 0 0 0.05447 2 52191 52191;52294 43.858 15.371 1 5538100 53636 9884 36157 36970 62307;62308 62307 0.07031210236641527 RPFDLVIPF 9 Unmodified _RPFDLVIPF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.316650390625 2 552.316035 1102.61752 1.2775 0.0007056 -0.23347 -0.00012895 1.0441 0.00057665 552.3156860001804 100.16 0.17528 93.988 93.912 94.088 -6.1757 22 10 3 0 0 0 0.022193 1 66911 66911 61.357 16.95 1 42082000 53637 9884 36157 36970 62309 62309 0.07031210236641527 RPFDTVFIFY 10 Unmodified _RPFDTVFIFY_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.3385009765625 2 652.837331 1303.66011 0.63199 0.00041259 0.40774 0.00026619 1.0397 0.00067878 652.8376696810609 99.931 0.10049 93.755 93.703 93.804 -6.1757 20 7 3 0 0 0 0.022967 1 66692 66692 72.968 15.497 1 57433000 53638 7991 36158 36971 62310 62310 0.02042560574250274 RPFEDQTSL 9 Unmodified _RPFEDQTSL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7702026367188 2 546.769645 1091.52474 -0.21815 -0.00011928 -0.2395 -0.00013095 -0.45765 -0.00025023 546.7694881511023 35.219 0.36377 35.219 35.016 35.38 0 74 18 5 0 0 0 0.0086209 2 18555 18555;18667 89.401 17.478 1 139100000 53639 9962 36159 36972 62311;62312 62311 -0.017363392873676275 RPFEDQTSL 9 Unmodified _RPFEDQTSL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7703857421875 2 546.769645 1091.52474 0.29577 0.00016172 -1.0603 -0.00057974 -0.76454 -0.00041802 546.7694679000072 40.268 0.58512 35.738 35.512 36.097 -4.5294 132 44 4 0 0 0 0.013609 3 23891 23891;24021;24158 70.332 15.228 1 179550000 53640 9962 36159 36972 62313;62314;62315 62313 -0.017363392873676275 RPFEDQTSL 9 Unmodified _RPFEDQTSL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.769645 1091.52474 -0.51583 -0.00028204 1.4344 0.00078429 0.91858 0.00050225 546.7701254550047 35.324 0.2222 35.101 35.023 35.245 -0.2224 -0.042682 0.0015564 NaN 89.401 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1603600 53641 9962 36159 36972 -0.017363392873676275 RPFEDQTSL 9 Unmodified _RPFEDQTSL_ 0 0 0 ENSG00000197498|ENST00000441448|RPF2;ENST00000424137.2_1_20:34340744-34341539:+|nuORF ENSG00000197498|ENST00000441448|RPF2 ENSG00000197498|ENST00000441448|RPF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.769645 1091.52474 0.015086 8.2484E-06 1.2175 0.00066572 1.2326 0.00067397 547.2722997224793 35.084 0.30901 35.112 34.924 35.233 0.027401 -0.032061 0.0013192 NaN 89.401 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1133800 53642 9962 36159 36972 -0.017363392873676275 RPFEENGACKY 11 Unmodified _RPFEENGACKY_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.298828125 2 657.300787 1312.58702 -0.49567 -0.00032581 -0.074913 -4.924E-05 -0.57059 -0.00037505 657.3006195026062 29.102 0.2798 29.102 28.982 29.262 0 33 13 3 0 0 0 4.0562E-09 1 15073 15073 115.06 73.219 1 1579800 53643 9393 36160 36973 62316 62316 -0.05676936210693384 RPFEENGACKY 11 Unmodified _RPFEENGACKY_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.8710327148438 3 438.536283 1312.58702 0.87543 0.00038391 -0.4184 -0.00018348 0.45703 0.00020042 438.53630200138565 28.607 0.54636 25.459 25.177 25.723 -3.1482 93 27 5 0 0 0 0.056311 3 15895 15876;15895;16007 40.714 38.279 1 102570000 53644 9393 36160 36973 62317;62318;62319 62318 -0.05676936210693384 RPFEENGACKY 11 Unmodified _RPFEENGACKY_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.2999877929688 2 657.300787 1312.58702 0.54665 0.00035931 0.42818 0.00028144 0.97483 0.00064076 657.3010618015048 28.627 0.36487 25.478 25.246 25.61 -3.1482 47 18 3 0 0 0 1.8131E-21 2 15912 15912;16035 153.7 119.3 1 34228000 53645 9393 36160 36973 62320;62321 62320 -0.05676936210693384 RPFEENGACKY 11 Carbamidomethyl (C) _RPFEENGAC(Carbamidomethyl (C))KY_ RPFEENGAC(1)KY RPFEENGAC(68)KY 0 1 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.87841796875 3 457.543438 1369.60848 0.11056 5.0585E-05 -1.2977 -0.00059374 -1.1871 -0.00054315 457.5430694906656 25.042 0.64308 22.159 21.871 22.514 -2.8831 327 53 8 0 0 0 0.0094656 3 13527 13527;13632;13747 68.436 61.812 1 2218400000 53646 9393 36160 36974 62322;62323;62324 62322 876 -0.061535511819784006 RPFEQPQEY 9 Unmodified _RPFEQPQEY_ 0 0 0 ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENST00000485979.1_1_3:107937380-107938376:-|nuORF ENSG00000114446|ENST00000264538|IFT57 ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2828369140625 2 597.28292 1192.55129 -0.38053 -0.00022728 -0.34775 -0.0002077 -0.72828 -0.00043499 597.2826727053888 30.882 0.44106 30.882 30.65 31.091 0 86 21 6 0 0 0 0.013609 2 16133 16031;16133 70.332 28.376 1 115850000 53647 3040 36161 36975 62325;62326 62326 -0.037286503960331174 RPFEQPQEY 9 Unmodified _RPFEQPQEY_ 0 0 0 ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENST00000485979.1_1_3:107937380-107938376:-|nuORF ENSG00000114446|ENST00000264538|IFT57 ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2830200195312 2 597.28292 1192.55129 0.46381 0.00027703 -1.2037 -0.00071894 -0.73988 -0.00044192 597.2821400375165 30.92 0.22632 30.817 30.665 30.891 -0.10269 17 8 3 0 0 0 0.18144 1 16068 16068 24.991 14.191 1 1624600 53648 3040 36161 36975 62327 62327 -0.037286503960331174 RPFEQPQEY 9 Unmodified _RPFEQPQEY_ 0 0 0 ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENST00000485979.1_1_3:107937380-107938376:-|nuORF ENSG00000114446|ENST00000264538|IFT57 ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2838134765625 2 597.28292 1192.55129 -0.26062 -0.00015567 0.84055 0.00050205 0.57993 0.00034638 597.2832453434438 30.706 0.18179 30.736 30.625 30.806 0.030106 17 7 3 0 0 0 0.091924 1 16076 16076 34.932 14.518 1 1168500 53649 3040 36161 36975 62328 62328 -0.037286503960331174 RPFEQPQEY 9 Unmodified _RPFEQPQEY_ 0 0 0 ENSG00000114446|ENST00000264538|IFT57;ENST00000465024.1_1_3:107932768-107941190:-|nuORF;ENST00000485979.1_1_3:107937380-107938376:-|nuORF ENSG00000114446|ENST00000264538|IFT57 ENSG00000114446|ENST00000264538|IFT57 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2828979492188 2 597.28292 1192.55129 0.42091 0.0002514 -0.21147 -0.00012631 0.20944 0.0001251 597.2827671846322 35.084 0.55918 30.989 30.7 31.259 -4.0951 109 32 5 0 0 0 0.0081887 3 20288 20167;20288;20417 103.42 31.564 1 184100000 53650 3040 36161 36975 62329;62330;62331 62330 -0.037286503960331174 RPFERRLYVL 10 Unmodified _RPFERRLYVL_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.6001281738281 3 450.266456 1347.77754 0.40021 0.0001802 -0.89595 -0.00040342 -0.49574 -0.00022321 450.26595346312115 42.052 0.26769 42.043 41.855 42.123 -0.0088196 19 12 2 0 0 0 0.34306 1 22469 22469 24.957 16.205 1 12074000 53651 1209 36162 36976 62332 62332 0.11756138233704405 RPFERRLYVL 10 Unmodified _RPFERRLYVL_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2670288085938 3 450.266456 1347.77754 1.195 0.00053809 -0.33427 -0.00015051 0.86077 0.00038758 450.2662599127243 88.575 0.41647 82.399 82.168 82.584 -6.1757 38 22 2 0 0 0 0.39689 2 58373 58373;58525 21.799 15.176 1 15049000 53652 1209 36162 36976 62333;62334 62333 0.11756138233704405 RPFERTITM 9 Oxidation (M) _RPFERTITM(Oxidation (M))_ RPFERTITM(1) RPFERTITM(53) 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.5372619628906 3 389.537736 1165.59138 -0.031624 -1.2319E-05 -1.4626 -0.00056972 -1.4942 -0.00058204 389.53727520565025 23.061 0.37414 23.074 22.879 23.253 0.012396 67 18 5 0 0 0 0.033747 1 11678 11678 53.317 32.736 1 53630000 53653 4949 36163 36977 62335 62335 902 0.015205730028583275 RPFERTITM 9 Oxidation (M) _RPFERTITM(Oxidation (M))_ RPFERTITM(1) RPFERTITM(46) 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8715209960938 3 389.537736 1165.59138 0.07661 2.9843E-05 -0.66806 -0.00026024 -0.59145 -0.00023039 389.5375767809727 22.913 0.32187 22.93 22.815 23.137 0.01749 39 17 3 0 0 0 0.047194 1 11765 11765 46.022 30.284 1 22027000 53654 4949 36163 36977 62336 62336 902 0.015205730028583275 RPFERTITM 9 Oxidation (M) _RPFERTITM(Oxidation (M))_ RPFERTITM(1) RPFERTITM(46) 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5379333496094 3 389.537736 1165.59138 0.499 0.00019438 -0.27768 -0.00010817 0.22133 8.6215E-05 389.5377435389401 26.149 0.68105 23.198 22.841 23.522 -2.9511 124 41 4 0 0 0 0.047194 2 14418 14418;14542 46.022 30.284 1 259820000 53655 4949 36163 36977 62337;62338 62337 902 0.015205730028583275 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.30712890625 2 575.805508 1149.59646 -0.13892 -7.9992E-05 -0.68059 -0.00039189 -0.81951 -0.00047188 575.8050284299911 34.445 0.18176 34.254 34.13 34.312 -0.19132 14 7 3 0 0 0 0.34134 1 17989 17989 15.248 8.1468 1 3086400 53656 4949 36163 36978 62339 62339 0.02764876865489896 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2051086425781 3 384.206098 1149.59646 -0.25344 -9.7372E-05 -1.3 -0.00049948 -1.5535 -0.00059686 384.2054109034084 34.421 0.18176 34.23 34.13 34.312 -0.19131 14 7 2 0 0 0 0.040683 1 18000 18000 39.213 27.695 1 3862600 53657 4949 36163 36978 62340 62340 0.02764876865489896 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8059692382812 2 575.805508 1149.59646 0.30844 0.0001776 -0.38941 -0.00022422 -0.08097 -4.6623E-05 575.8055379549652 34.167 0.22993 34.196 34.036 34.266 0.028934 16 10 2 0 0 0 0.35911 1 17998 17998 14.405 7.6822 1 1485800 53658 4949 36163 36978 62341 62341 0.02764876865489896 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2057495117188 3 384.206098 1149.59646 0.10949 4.2068E-05 -0.5159 -0.00019821 -0.40641 -0.00015614 384.20572946935096 34.166 0.27183 34.195 34.036 34.308 0.028934 24 12 3 0 0 0 0.38785 1 18014 18014 12.873 6.6808 1 2562800 53659 4949 36163 36978 62342 62342 0.02764876865489896 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8056640625 2 575.805508 1149.59646 0.39289 0.00022623 0.022945 1.3212E-05 0.41584 0.00023944 575.8057597120322 38.624 0.53144 34.255 33.964 34.495 -4.3689 102 33 4 0 0 0 0.013118 3 22670 22670;22802;22943 71.708 47.687 1 172000000 53660 4949 36163 36978 62343;62344;62345 62343 0.02764876865489896 RPFERTITM 9 Unmodified _RPFERTITM_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.206787109375 3 384.206098 1149.59646 0.7612 0.00029246 0.41456 0.00015927 1.1758 0.00045173 384.20626376509244 38.617 0.64126 34.248 33.9 34.541 -4.3689 131 40 5 0 0 0 0.025842 3 22676 22676;22801;22942 46.022 30.284 1 285050000 53661 4949 36163 36978 62346;62347;62348 62346 0.02764876865489896 RPFEVLMQF 9 Unmodified _RPFEVLMQF_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8056030273438 2 583.804977 1165.5954 1.1842 0.00069136 1.4023 0.00081866 2.5865 0.00151 583.8053997653469 97.871 0.17336 91.695 91.627 91.8 -6.1757 13 10 2 0 0 0 0.023481 1 64885 64885 60.074 16.216 1 19275000 53662 1724 36164 36979 62349 62349 0.01922662496576777 RPFFPGLVKY 10 Unmodified _RPFFPGLVKY_ 0 0 0 nc|ENSG00000243678|P22392-2|NME2;ENST00000570801.1_1_17:49245578-49248962:+|nuORF;nc|ENSG00000123009|O60361|NME2P1;ENSG00000243678|ENST00000512737|NME2 nc|ENSG00000243678|P22392-2|NME2 nc|ENSG00000243678|P22392-2|NME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5695495605469 3 408.569365 1222.68626 0.14029 5.7319E-05 0.053564 2.1885E-05 0.19386 7.9204E-05 408.5693635934002 59.181 0.20128 59.122 58.986 59.187 -0.059105 22 9 3 0 0 0 0.20771 1 32231 32231 32.898 27.601 1 3418900 53663 16576 36165 36980 62350 62350 0.08382874536368945 RPFGISAL 8 Unmodified _RPFGISAL_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.7530822753906 2 430.75307 859.491587 0.36542 0.00015741 0.0508 2.1882E-05 0.41622 0.00017929 430.75312031520764 55.116 0.29663 55.047 54.841 55.138 -0.068737 34 14 3 0 0 0 0.38465 1 29916 29916 46.021 15.796 1 7883600 53664 1924;6336 36166 36981 62351 62351 0.05622123451234984 RPFGISAL 8 Unmodified _RPFGISAL_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;ENST00000484488.5_1_20:60711915-60714832:-|nuORF;nc|ENSG00000101182|O14818-2|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.7537841796875 2 430.75307 859.491587 1.2467 0.00053702 0.0058187 2.5064E-06 1.2525 0.00053952 430.75310974204837 60.687 0.33329 54.539 54.444 54.778 -6.1478 26 17 2 0 0 0 0.38465 1 39065 39065 46.021 13.715 1 16061000 53665 1924;6336 36166 36981 62352 62352 0.05622123451234984 RPFGVALLF 9 Unmodified _RPFGVALLF_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5;ENST00000477897.1_1_1:109954497-109954779:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8065185546875 2 510.30547 1018.59639 0.22673 0.0001157 -0.046785 -2.3875E-05 0.17995 9.1829E-05 510.3054636954974 87.706 0.34359 87.759 87.586 87.929 0.053352 24 14 2 0 0 0 0.094631 1 48860 48860 32.305 0 1 32066000 53666 5462 36167 36982 62353 62353 0.08783244927792566 RPFGVALLF 9 Unmodified _RPFGVALLF_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;nc|ENSG00000143106|P28066-2|PSMA5;ENST00000477897.1_1_1:109954497-109954779:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3060913085938 2 510.30547 1018.59639 0.11019 5.6232E-05 1.0774 0.00054979 1.1876 0.00060603 510.3058437246579 99.771 0.15562 93.595 93.508 93.664 -6.1757 28 10 4 0 0 0 0.1773 1 66523 66523 25.399 2.2509 1 232380000 53667 5462 36167 36982 62354 62354 0.08783244927792566 RPFGVSLLY 9 Unmodified _RPFGVSLLY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3019409179688 2 526.300384 1050.58622 0.53731 0.00028279 -0.0022301 -1.1737E-06 0.53508 0.00028161 526.3003743950342 69.01 0.36322 69.041 68.823 69.187 0.030914 64 17 5 0 0 0 0.047714 2 37855 37855;37957 41.84 7.7372 1 68841000 53668 654 36168 36983 62355;62356 62355 0.06294637202586273 RPFGVSLLY 9 Unmodified _RPFGVSLLY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;nc|ENSG00000041357|P25789-2|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.300537109375 2 526.300384 1050.58622 1.1381 0.00059899 -0.78691 -0.00041415 0.3512 0.00018483 526.3001117294042 88.963 1.478 82.787 81.956 83.434 -6.1757 277 82 5 0 0 0 0.091924 1 58884 58884 30.637 0 1 70972000 53669 654 36168 36983 62357 62357 0.06294637202586273 RPFHGISTVSL 11 Unmodified _RPFHGISTVSL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2274780273438 3 405.227779 1212.66151 -0.079202 -3.2095E-05 -0.025278 -1.0243E-05 -0.10448 -4.2338E-05 405.22778973986794 45.711 0.21692 45.683 45.565 45.782 -0.028011 21 10 3 0 0 0 0.2736 1 24570 24570 28.181 19.205 1 4752200 53670 4903 36169 36984 62358 62358 0.063681946629913 RPFLGSSWVVY 11 Unmodified _RPFLGSSWVVY_ 0 0 0 nc|ENSG00000160404|Q8N2E6|TOR2A;nc|ENSG00000160404|Q5JU69-2|TOR2A;ENSG00000160404|ENST00000373284|TOR2A;ENST00000493439.1_1_9:130494756-130497542:-|nuORF;ENST00000496460.5_1_9:130494315-130497584:-|nuORF nc|ENSG00000160404|Q8N2E6|TOR2A nc|ENSG00000160404|Q8N2E6|TOR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8497314453125 2 655.84823 1309.68191 0.94829 0.00062193 0.33119 0.00021721 1.2795 0.00083914 656.350158154317 95.164 0.23457 88.989 88.854 89.089 -6.1757 20 12 2 0 0 0 0.40509 1 63020 63020 26.021 10.772 1 7144000 53671 6725 36170 36985 62359 62359 0.03945365322806538 RPFLLPHNII 10 Unmodified _RPFLLPHNII_ 0 0 0 REV__ENSG00000148841|ENST00000337478|ITPRIP REV__ENSG00000148841|ENST00000337478|ITPRIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 407.5474548339844 3 407.248514 1218.72371 1.2871 0.00052417 -0.29892 -0.00012173 0.98817 0.00040243 407.24834849345615 20.775 0.22197 18.082 17.964 18.186 -2.693 18 14 2 0 0 0 0.23966 1 11018 11018 3.3196 1.2336 1 3471700 + 53672 20973 36171 36986 62360 62360 0.12309965801978251 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2359008789062 3 375.901226 1124.68185 0.26411 9.9278E-05 0.28654 0.00010771 0.55065 0.00020699 375.90130665600213 48.666 0.4113 48.622 48.455 48.867 -0.04369 64 20 5 0 0 0 0.062454 2 26225 26225;26329 41.956 22.594 1 31455000 53673 3760 36172 36987 62361;62362 62361 0.12449410113458725 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3486328125 2 563.3482 1124.68185 0.69132 0.00038946 -0.064909 -3.6566E-05 0.62641 0.00035289 563.3482272410456 48.687 0.29571 48.643 48.476 48.772 -0.04369 41 14 4 0 0 0 0.012668 1 26236 26236 61.357 45.208 1 11691000 53674 3760 36172 36987 62363 62363 0.12449410113458725 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2356262207031 3 375.901226 1124.68185 1.7668 0.00066415 0.25151 9.4545E-05 2.0183 0.00075869 375.90108425724065 54.178 0.41695 48.313 48.083 48.5 -5.8653 43 23 2 0 0 0 0.11784 1 34296 34296 31.268 11.642 1 18224000 53675 3760 36172 36987 62364 62364 0.12449410113458725 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.9013671875 3 375.901226 1124.68185 1.327 0.00049883 -0.30746 -0.00011557 1.0196 0.00038326 375.9011360063545 80.848 0.91379 74.672 74.296 75.21 -6.1757 107 51 3 0 0 0 0.040683 4 53171 52920;53047;53171;53302 49.554 26.896 1 25171000 53676 3760 36172 36987 62365;62366;62367;62368 62367 0.12449410113458725 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3491821289062 2 563.3482 1124.68185 0.99356 0.00055972 0.061335 3.4553E-05 1.0549 0.00059428 563.3483689071732 80.807 0.84128 74.631 74.369 75.21 -6.1757 98 47 3 0 0 0 0.13231 1 52941 52941 32.305 2.4649 1 28896000 53677 3760 36172 36987 62369 62369 0.12449410113458725 RPFLRPNII 9 Unmodified _RPFLRPNII_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 563.3482 1124.68185 1.4389 0.00081058 -0.36686 -0.00020667 1.072 0.0006039 563.348007802368 54.175 0.29771 48.309 48.139 48.437 -5.8653 -0.16688 -0.00016632 NaN 61.357 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 11875000 53678 3760 36172 36987 0.12449410113458725 RPFLSRESL 9 Unmodified _RPFLSRESL_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1;ENSG00000169021|ENST00000304863|UQCRFS1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8771362304688 3 368.876857 1103.60874 -0.38042 -0.00014033 -0.1154 -4.257E-05 -0.49582 -0.0001829 368.8767662885306 36.763 0.12675 36.514 36.427 36.554 -0.2497 9 5 2 0 0 0 0.16979 1 19313 19313 26.021 9.4548 1 3728800 53679 16553 36173 36988 62370 62370 0.061082366001983246 RPFLSRESL 9 Unmodified _RPFLSRESL_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1;ENSG00000169021|ENST00000304863|UQCRFS1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8761291503906 3 368.876857 1103.60874 -0.27151 -0.00010015 -0.29661 -0.00010941 -0.56812 -0.00020957 368.87675114304324 36.442 0.14545 36.463 36.349 36.494 0.021545 15 6 3 0 0 0 0.062454 1 19282 19282 39.213 9.7758 1 4449300 53680 16553 36173 36988 62371 62371 0.061082366001983246 RPFLSRESL 9 Unmodified _RPFLSRESL_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1;ENSG00000169021|ENST00000304863|UQCRFS1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8767700195312 3 368.876857 1103.60874 1.8694 0.00068958 -1.1868 -0.00043779 0.68257 0.00025178 368.8761238030935 40.886 0.32087 36.278 36.067 36.387 -4.6079 40 19 3 0 0 0 0.082934 1 24471 24471 29.281 5.48 1 10793000 53681 16553 36173 36988 62372 62372 0.061082366001983246 RPFMDYFDE 9 Unmodified _RPFMDYFDE_ 0 0 0 ADCY10|p.G41E|1|0.23|ENSG00000143199|chr1:167905019-167905019|C/T|missense_variant ADCY10|p.G41E|1|0.23|ENSG00000143199|chr1:167905019-167905019|C/T|missense_variant ADCY10|p.G41E|1|0.23|ENSG00000143199|chr1:167905019-167905019|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.1752319335938 3 407.174463 1218.50156 NaN NaN NaN NaN NaN NaN NaN 23.027 1 23.039 22.539 23.539 0.012396 0 0 0 0.84737 1 11731 11731 0.96228 0.55401 1 53682 10 36174 36989 62373 62373 -0.09895101396364225 RPFPGLVI 8 Unmodified _RPFPGLVI_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.7799682617188 2 449.779088 897.543623 0.88505 0.00039808 0.2719 0.0001223 1.157 0.00052037 449.77927799068743 69.285 0.38349 69.316 69.093 69.476 0.030922 38 21 3 0 0 0 0.55032 1 38025 38025 30.225 9.3536 1 5599600 53683 10851 36175 36990 62374 62374 0.09075286864992904 RPFPQVWSF 9 Unmodified _RPFPQVWSF_ 0 0 0 ENST00000603175.1_1_2:74730887-74731265:+|nuORF ENST00000603175.1_1_2:74730887-74731265:+|nuORF ENST00000603175.1_1_2:74730887-74731265:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 582.3046875 2 582.303458 1162.59236 NaN NaN NaN NaN NaN NaN NaN 95.628 1 89.452 88.952 89.952 -6.1757 0 0 0 0.22437 1 63347 63347 29.082 1.4528 1 53684 15829 36176 36991 62375 62375 0.017571554340747753 RPFPSVELF 9 Unmodified _RPFPSVELF_ 0 0 0 nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN;nc|ENSG00000157766|P16112-3|ACAN nc|ENSG00000157766|P16112-2|ACAN nc|ENSG00000157766|P16112-2|ACAN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2052307128906 3 364.53432 1090.58113 0.25667 9.3565E-05 0.86464 0.00031519 1.1213 0.00040876 364.5347197476682 39.725 0.26711 39.73 39.585 39.852 0.0050545 18 12 2 0 0 0 0.21493 1 21150 21150 2.4985 0.41248 1 1507500 53685 6539 36177 36992 62376 62376 0.039463333399453404 RPFQRTVTM 9 Unmodified _RPFQRTVTM_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2;nc|ENSG00000125775|Q9H190-3|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2073364257812 3 379.206209 1134.5968 0.21893 8.3021E-05 0.42408 0.00016081 0.64301 0.00024383 379.2064028323426 26.359 0.19436 26.386 26.301 26.495 0.026951 14 8 2 0 0 0 0.025842 1 13671 13671 46.022 35.123 1 3205300 53686 3881 36178 36993 62377 62377 0.03488296585351236 RPFQRTVTM 9 Unmodified _RPFQRTVTM_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2;nc|ENSG00000125775|Q9H190-3|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3059692382812 2 568.305675 1134.5968 0.67524 0.00038374 0.35475 0.0002016 1.03 0.00058535 568.305804156679 29.986 0.50344 26.571 26.256 26.76 -3.4153 66 24 4 0 0 0 0.078314 2 16820 16820;16933 38.176 24.27 1 165490000 53687 3881 36178 36993 62378;62379 62378 0.03488296585351236 RPFQRTVTM 9 Unmodified _RPFQRTVTM_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2;nc|ENSG00000125775|Q9H190-3|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2067565917969 3 379.206209 1134.5968 1.0176 0.00038589 0.27437 0.00010404 1.292 0.00048993 379.2061637992619 29.949 0.54342 26.647 26.37 26.913 -3.3016 91 26 5 0 0 0 0.011671 2 16822 16822;16929 61.09 43.227 1 284980000 53688 3881 36178 36993 62380;62381 62380 0.03488296585351236 RPFQRTVTM 9 Unmodified _RPFQRTVTM_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2;nc|ENSG00000125775|Q9H190-3|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 568.305675 1134.5968 0.37601 0.00021369 0.17079 9.7058E-05 0.5468 0.00031075 568.3050226267547 26.365 0.21642 26.392 26.279 26.495 0.026951 -0.089231 -0.0002019 NaN 38.176 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2791700 53689 3881 36178 36993 0.03488296585351236 RPFRYGPRT 9 Unmodified _RPFRYGPRT_ 0 0 0 nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1 nc|ENSG00000064042|Q9UPQ0-8|LIMCH1 nc|ENSG00000064042|Q9UPQ0-8|LIMCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8806457519531 3 383.880713 1148.62031 0.46213 0.0001774 -0.56959 -0.00021865 -0.10745 -4.125E-05 383.88032022286643 26.027 0.36244 23.076 22.822 23.184 -2.9511 40 23 2 0 0 0 0.5029 1 14319 14319 4.5289 0 1 19135000 53690 16040 36179 36994 62382 62382 0.051944784141596756 RPFSPREAL 9 Unmodified _RPFSPREAL_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.798583984375 2 536.79854 1071.58253 0.15074 8.0915E-05 0.63206 0.00033929 0.7828 0.00042021 536.7987410348941 31.339 0.22394 31.236 31.109 31.333 -0.10269 13 8 2 0 0 0 0.18144 1 16305 16305 24.991 6.8446 1 2260700 53691 7895 36180 36995 62383 62383 0.04959967428703749 RPFSPREAL 9 Unmodified _RPFSPREAL_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.2024536132812 3 358.201452 1071.58253 NaN NaN NaN NaN NaN NaN NaN 31.382 1 31.279 30.779 31.779 -0.10269 0 0 0 0.32622 1 16312 16312 17.863 6.3685 1 53692 7895 36180 36995 62384 62384 0.04959967428703749 RPFSPREAL 9 Unmodified _RPFSPREAL_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2011108398438 3 358.201452 1071.58253 1.6489 0.00059065 -0.61498 -0.00022029 1.034 0.00037037 358.20133751917535 35.016 0.37516 30.921 30.7 31.075 -4.0951 37 21 2 0 0 0 0.029718 1 20229 20229 44.392 31.519 1 7652100 53693 7895 36180 36995 62385 62385 0.04959967428703749 RPFSPREAL 9 Unmodified _RPFSPREAL_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MSMS AL20221201_MKP_PDAC_01 4 536.79736328125 2 536.79854 1071.58253 NaN NaN NaN NaN NaN NaN NaN 34.994 1 30.899 30.399 31.399 -4.0951 0 0 0 0.08368 1 20248 20248 47.594 24.446 1 53694 7895 36180 36995 62386 62386 0.04959967428703749 RPFSPTLRVL 10 Unmodified _RPFSPTLRVL_ 0 0 0 ENST00000250101.9_1_17:6544469-6545099:+|nuORF ENST00000250101.9_1_17:6544469-6545099:+|nuORF ENST00000250101.9_1_17:6544469-6545099:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5611267089844 3 395.908269 1184.70298 0.23018 9.1129E-05 1.0613 0.00042016 1.2914 0.00051129 395.9088681448702 52.059 0.13062 52 51.896 52.027 -0.058918 12 5 3 0 0 0 0.22797 1 28174 28174 17.863 9.9178 1 965610 53695 11137 36181 36996 62387 62387 0.11801375422351157 RPFSRHFR 8 Unmodified _RPFSRHFR_ 0 0 0 ENST00000336617.7_1_13:51483970-51501548:+|nuORF ENST00000336617.7_1_13:51483970-51501548:+|nuORF ENST00000336617.7_1_13:51483970-51501548:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2046203613281 3 368.20542 1101.59443 NaN NaN NaN NaN NaN NaN NaN 23.18 1 23.192 22.692 23.692 0.012396 0 0 0 0.97444 1 11814 11814 1.4819 0.51963 1 53696 11915 36182 36997 62388 62388 0.047696289625719146 RPFTVAASF 9 Unmodified _RPFTVAASF_ 0 0 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2694091796875 2 498.269084 994.523616 0.4542 0.00022632 0.35774 0.00017825 0.81194 0.00040456 498.26925788353634 52.966 0.24165 52.903 52.782 53.024 -0.063423 18 11 2 0 0 0 0.11784 1 28721 28721 31.268 4.3847 1 1749200 53697 723 36183 36998 62389 62389 0.026134911343774547 RPFYRHWA 8 Unmodified _RPFYRHWA_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5329284667969 3 378.198154 1131.57263 0.17555 6.6392E-05 0.35988 0.00013611 0.53543 0.0002025 378.53265554722293 24.247 0.20424 24.268 24.19 24.394 0.021183 9 7 2 0 0 0 0.80311 1 12535 12535 3.2813 2.319 1 2459100 53698 8599 36184 36999 62390 62390 0.012108242139902359 RPFYRHWAI 9 Unmodified _RPFYRHWAI_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.8932800292969 3 415.892842 1244.6567 -0.085323 -3.5485E-05 0.91491 0.0003805 0.82958 0.00034502 415.89320667625094 38.123 0.34313 38.14 37.922 38.265 0.01704 45 15 4 0 0 0 0.2143 1 20242 20242 15.248 6.2722 1 19303000 53699 8599 36185 37000 62391 62391 0.04415355310902669 RPFYRHWAI 9 Unmodified _RPFYRHWAI_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.2276611328125 3 415.892842 1244.6567 1.3533 0.00056284 0.46188 0.00019209 1.8152 0.00075493 416.227450854258 87.789 0.83233 81.613 81.056 81.889 -6.1757 72 45 2 0 0 0 0.06187 2 57868 57685;57868 31.268 22.025 1 38293000 53700 8599 36185 37000 62392;62393 62393 0.04415355310902669 RPFYRHWAI 9 Unmodified _RPFYRHWAI_ 0 0 0 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MSMS AL20221201_MKP_PDAC_01 4 415.8934020996094 3 415.892842 1244.6567 NaN NaN NaN NaN NaN NaN NaN 87.962 1 81.786 81.286 82.286 -6.1757 0 0 0 0.46757 1 58016 58016 16.149 5.3496 1 53701 8599 36185 37000 62394 62394 0.04415355310902669 RPGAERAIIHV 11 Unmodified _RPGAERAIIHV_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.907958984375 3 406.907039 1217.69929 1.0334 0.00042052 -0.32322 -0.00013152 0.71022 0.00028899 406.9071284137529 30.343 0.31988 26.846 26.655 26.975 -3.497 23 15 2 0 0 0 0.13728 1 17097 17097 38.161 23.942 1 17373000 53702 6769 36186 37001 62395 62395 0.09914705648452582 RPGAHKAA 8 Unmodified _RPGAHKAA_ 0 0 0 ENST00000368678.8_1_6:112041256-112194621:-|nuORF ENST00000368678.8_1_6:112041256-112194621:-|nuORF ENST00000368678.8_1_6:112041256-112194621:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.4561767578125 1 807.458396 806.45112 -0.40313 -0.00032551 -1.4681 -0.0011855 -1.8713 -0.001511 807.456539962027 103.2 0.069733 103.15 103.1 103.16 -0.047928 4 2 2 0 0 0 0.80676 1 57315 57315 2.5775 0 1 775440 53703 12279 36187 37002 62396 62396 0.04015201851461825 RPGAMSVLMI 10 Unmodified _RPGAMSVLMI_ 0 0 0 REV__ENST00000402905.7_2_2:203776975-203782638:+|nuORF REV__ENST00000402905.7_2_2:203776975-203782638:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7933959960938 2 537.793555 1073.57256 0.75756 0.00040741 0.089586 4.8179E-05 0.84715 0.00045559 537.7936144430512 91.308 0.85855 85.133 84.543 85.401 -6.1757 123 49 3 0 0 0 0.24511 4 60410 60034;60162;60291;60410 22.736 22.736 1 49766000 + 53704 26621 36188 37003 62397;62398;62399;62400 62400 0.03871320107464271 RPGGAGKG 8 Unmodified _RPGGAGKG_ 0 0 0 REV__ENSG00000277494|ENST00000622500|GPIHBP1 REV__ENSG00000277494|ENST00000622500|GPIHBP1 MSMS AL20221201_MKP_PDAC_01 4 350.5328063964844 2 350.198462 698.382371 NaN NaN NaN NaN NaN NaN NaN 18.548 1 15.926 15.426 16.426 -2.6215 0 0 0 0.97444 1 9777 9777 4.756 2.4533 1 + 53705 24665 36189 37004 62401 62401 0.021115375517638313 RPGGATAA 8 Unmodified _RPGGATAA_ 0 0 0 REV__ENST00000476798.1_1_6:108041877-108053271:-|nuORF REV__ENST00000476798.1_1_6:108041877-108053271:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.6905517578125 2 350.69047 699.366387 0.032245 1.1308E-05 -0.58567 -0.00020539 -0.55342 -0.00019408 350.6902973828102 72.181 0.29361 72.181 71.986 72.28 0 15 13 2 0 0 0 0.80992 1 40148 40148 0.69038 0 1 457410 + 53706 20826 36190 37005 62402 62402 0.004678313148360758 RPGGATAA 8 Unmodified _RPGGATAA_ 0 0 0 REV__ENST00000476798.1_1_6:108041877-108053271:-|nuORF REV__ENST00000476798.1_1_6:108041877-108053271:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 350.69047 699.366387 0.032245 1.1308E-05 -0.58567 -0.00020539 -0.55342 -0.00019408 350.6902973828102 72.181 0.29361 72.181 71.986 72.28 0 0.12321 0.00015611 NaN 0.69038 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 457410 + 53707 20826 36190 37005 0.004678313148360758 RPGGAWIRV 9 Unmodified _RPGGAWIRV_ 0 0 0 REV__ENST00000306467.9_1_5:122754157-122758966:-|nuORF REV__ENST00000306467.9_1_5:122754157-122758966:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 506.3013000488281 2 506.295968 1010.57738 NaN NaN NaN NaN NaN NaN NaN 18.296 1 15.674 15.174 16.174 -2.6215 0 0 0 0.39043 1 9629 9629 20.454 6.9457 1 + 53708 25380 36191 37006 62403 62403 0.07251708356750441 RPGGLGSSSL 10 Unmodified _RPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7579650878906 2 465.753798 929.493044 NaN NaN NaN NaN NaN NaN NaN 28.643 1 28.643 28.143 29.143 0 0 0 0 0.12081 1 14804 14804 49.554 9.597 1 + 53709 199 36192 37007 62404 62404 0.025477127493331864 RPGGLGSSSL 10 Unmodified _RPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7532043457031 2 465.753798 929.493044 NaN NaN NaN NaN NaN NaN NaN 28.716 1 28.716 28.216 29.216 0 0 0 0 0.057161 1 14846 14846 55.503 9.8031 1 + 53710 199 36192 37007 62405 62405 0.025477127493331864 RPGGLGSSSL 10 Unmodified _RPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7539367675781 2 465.753798 929.493044 0.49862 0.00023223 -0.48011 -0.00022361 0.018507 8.6196E-06 465.75363290564667 28.69 0.28192 28.628 28.528 28.81 -0.062159 26 11 3 0 0 0 0.060508 1 14798 14798 55.503 11.73 1 21895000 + 53711 199 36192 37007 62406 62406 0.025477127493331864 RPGGLGSSSL 10 Unmodified _RPGGLGSSSL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7538757324219 2 465.753798 929.493044 1.0328 0.00048103 -0.42235 -0.00019671 0.61046 0.00028432 465.75358254023735 32.339 0.59651 28.483 28.218 28.814 -3.8562 103 33 4 0 0 0 0.060508 3 18413 18289;18413;18538 55.503 13.663 1 349240000 + 53712 199 36192 37007 62407;62408;62409 62408 0.025477127493331864 RPGKAAAF 8 Unmodified _RPGKAAAF_ 0 0 0 REV__ENSG00000125895|ENST00000429036|TMEM74B REV__ENSG00000125895|ENST00000429036|TMEM74B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 408.8886413574219 2 409.237587 816.460622 1.3224 0.00054116 -0.30103 -0.00012319 1.0213 0.00041797 409.23709234864134 21.214 0.15667 18.521 18.433 18.59 -2.693 10 8 2 0 0 0 8.7369 1 11316 11316 12.532 6.1774 1 2127800 + 53713 19526 36193 37008 62410 62410 0.04504970136974862 RPGKIVQM 8 Unmodified _RPGKIVQM_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MSMS AL20221201_MKP_PDAC_01 4 464.7727355957031 2 464.77348 927.532406 NaN NaN NaN NaN NaN NaN NaN 24.332 1 21.505 21.005 22.005 -2.8273 0 0 0 0.60022 1 13241 13241 34.102 15.967 1 53714 10449 36194 37009 62411 62411 0.06574141499197594 RPGPPPPPP 9 Unmodified _RPGPPPPPP_ 0 0 0 REV__ENSG00000269855|ENST00000601382|RNF225 REV__ENSG00000269855|ENST00000601382|RNF225 MSMS AL20221201_MKP_PDAC_01 4 456.2577514648438 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 24.757 1 21.874 21.374 22.374 -2.8831 0 0 0 0.39043 1 13499 13499 20.454 0 1 + 53715 24624 36195 37010 62412 62412 0.04365525825505756 RPGPSLWREA 10 Unmodified _RPGPSLWREA_ 0 0 0 ENST00000461361.5_1_3:45053829-45053919:+|nuORF ENST00000461361.5_1_3:45053829-45053919:+|nuORF ENST00000461361.5_1_3:45053829-45053919:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2127380371094 3 390.21224 1167.61489 1.4338 0.00055947 -0.66398 -0.00025909 0.76978 0.00030038 390.21202626116843 37.01 0.39869 32.726 32.524 32.923 -4.2835 35 24 2 0 0 0 0.52097 1 21667 21667 9.7643 4.3615 1 7765000 53716 13659 36196 37011 62413 62413 0.03778754831705555 RPGPSLWREA 10 Unmodified _RPGPSLWREA_ 0 0 0 ENST00000461361.5_1_3:45053829-45053919:+|nuORF ENST00000461361.5_1_3:45053829-45053919:+|nuORF ENST00000461361.5_1_3:45053829-45053919:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 390.21224 1167.61489 -0.23311 -9.0961E-05 -1.6487 -0.00064335 -1.8818 -0.00073431 390.54488948557724 33.198 0.11452 33.039 32.984 33.098 -0.15918 0.15605 -0.0011199 NaN 9.7643 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 370140 53717 13659 36196 37011 0.03778754831705555 RPGQKGGA 8 Unmodified _RPGQKGGA_ 0 0 0 REV__ENSG00000114853|ENST00000232974|ZBTB47 REV__ENSG00000114853|ENST00000232974|ZBTB47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.71728515625 2 385.717019 769.419485 1.5264 0.00058874 -0.94353 -0.00036394 0.58282 0.0002248 385.7167297542616 20.177 0.55945 17.52 17.239 17.798 -2.6564 61 35 2 0 0 0 0.79669 1 10786 10786 8.5933 3.3626 1 18972000 + 53718 18936 36197 37012 62414 62414 0.025552090975224928 RPGRGEPRF 9 Unmodified _RPGRGEPRF_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8654174804688 3 357.865063 1070.57336 0.92147 0.00032976 0.956 0.00034212 1.8775 0.00067188 357.86550882770695 16.791 0.33886 14.234 14.059 14.398 -2.557 111 53 3 0 0 0 0.2324 2 8778 8671;8778 14.957 0 1 9381900 53719 10298;10306;10398;10636;10313 36198 37013 62415;62416 62416 0.04089618863031319 RPGRLVTE 8 Unmodified _RPGRLVTE_ 0 0 0 REV__ENST00000571580.1_1_16:2983897-2986840:+|nuORF REV__ENST00000571580.1_1_16:2983897-2986840:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.2725219726562 2 464.272158 926.529764 NaN NaN NaN NaN NaN NaN NaN 22.294 1 19.56 19.06 20.06 -2.7348 0 0 0 0.88449 1 11985 11985 19.257 3.4098 1 + 53720 28977 36199 37014 62417 62417 0.06356009365890714 RPGRPPPPP 9 Unmodified _RPGRPPPPP_ 0 0 0 REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7832641601562 2 485.782693 969.550834 0.2346 0.00011397 -0.38393 -0.00018651 -0.14933 -7.2541E-05 485.78267039248897 17.17 0.19046 17.176 17.067 17.257 0.0050564 19 13 2 0 0 0 0.49272 1 8627 8627 7.9102 0 1 636090 + 53721 27014 36200 37015 62418 62418 0.0648401946540389 RPGRPPPPP 9 Unmodified _RPGRPPPPP_ 0 0 0 REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 485.782693 969.550834 0.2346 0.00011397 -0.38393 -0.00018651 -0.14933 -7.2541E-05 485.78267039248897 17.17 0.19046 17.176 17.067 17.257 0.0050564 0 0 NaN 7.9102 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 636090 + 53722 27014 36200 37015 0.0648401946540389 RPGTELPRK 9 Unmodified _RPGTELPRK_ 0 0 0 REV__ENSG00000148411|ENST00000277554|NACC2 REV__ENSG00000148411|ENST00000277554|NACC2 MSMS AL20221201_MKP_PDAC_01 4 351.8781127929688 3 351.876969 1052.60908 NaN NaN NaN NaN NaN NaN NaN 16.307 1 13.75 13.25 14.25 -2.557 0 0 0 0.74422 1 8440 8440 7.9454 1.711 1 + 53723 20951 36201 37016 62419 62419 0.08487656320039605 RPGVKLTL 8 Unmodified _RPGVKLTL_ 0 0 0 ENST00000604654.1_1_14:100431584-100431647:+|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2 ENST00000604654.1_1_14:100431584-100431647:+|nuORF ENST00000604654.1_1_14:100431584-100431647:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2892761230469 2 442.28982 882.565087 0.057033 2.5225E-05 -0.71335 -0.00031551 -0.65632 -0.00029028 442.2894054240442 36.554 0.28956 36.575 36.372 36.661 0.021545 23 13 2 0 0 0 0.34916 1 19335 19335 49.933 9.9757 1 4062600 53724 1248 36202 37017 62420 62420 0.11910671893701874 RPGYRVKEI 9 Unmodified _RPGYRVKEI_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18 nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.2206420898438 3 373.220735 1116.64038 -0.56212 -0.00020979 0.64775 0.00024175 0.085631 3.1959E-05 373.22092250333566 18.843 0.19379 18.866 18.784 18.977 0.023106 54 21 3 0 0 0 0.069655 1 9466 9466 40.239 8.2017 1 5492800 53725 6057 36203 37018 62421 62421 0.08672229354147021 RPGYRVKEI 9 Unmodified _RPGYRVKEI_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18 nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.220735 1116.64038 -0.51553 -0.00019241 0.30004 0.00011198 -0.21549 -8.0426E-05 373.22075319357515 18.768 0.17541 18.768 18.703 18.879 0 -0.080255 0.00012808 NaN 40.239 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 718920 53726 6057 36203 37018 0.08672229354147021 RPHAECKVTV 10 Unmodified _RPHAECKVTV_ 0 0 0 REV__ENSG00000090339|ENST00000264832|ICAM1 REV__ENSG00000090339|ENST00000264832|ICAM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2081909179688 3 380.537847 1138.59171 -0.46843 -0.00017826 -1.0328 -0.00039303 -1.5013 -0.00057129 380.53742916076226 25.408 0.38113 25.408 25.147 25.528 0 44 18 3 0 0 0 0.23952 1 12893 12893 1.4551 0 1 6009100 + 53727 17854 36204 37019 62422 62422 0.02795992722712981 RPHEEACD 8 Unmodified _RPHEEACD_ 0 0 0 ENST00000504307.1_2_17:48258079-48258136:-|nuORF ENST00000504307.1_2_17:48258079-48258136:-|nuORF ENST00000504307.1_2_17:48258079-48258136:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.6986389160156 2 478.698166 955.381779 0.74326 0.0003558 0.68162 0.00032629 1.4249 0.00068209 478.6984189751425 49.19 0.36368 43.794 43.572 43.936 -5.3961 45 24 2 0 0 0 0.79783 1 30587 30587 7.9102 2.1497 1 71721000 53728 14491 36205 37020 62423 62423 -0.09769669950276239 RPHEWLML 8 Unmodified _RPHEWLML_ 0 0 0 REV__ENST00000473989.7_2_7:138968337-138968418:+|nuORF REV__ENST00000473989.7_2_7:138968337-138968418:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.1912231445312 3 361.1919 1080.55387 NaN NaN NaN NaN NaN NaN NaN 42.121 1 37.437 36.937 37.937 -4.6846 0 0 0 0.95201 1 25402 25402 7.2892 2.7604 1 + 53729 27552 36206 37021 62424 62424 0.016815265279092273 RPHGPWWVR 9 Unmodified _RPHGPWWVR_ 0 0 0 REV__ENST00000478406.5_1_1:227170215-227170924:+|nuORF REV__ENST00000478406.5_1_1:227170215-227170924:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.820068359375 2 595.820141 1189.62573 NaN NaN NaN NaN NaN NaN NaN 20.906 1 20.917 20.417 21.417 0.010553 0 0 0 0.8622 1 10679 10679 0 0 1 + 53730 27635 36207 37022 62425 62425 0.038502019966244916 RPHGQQIVF 9 Unmodified _RPHGQQIVF_ 0 0 0 ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13 ENST00000566842.5_1_16:29918195-29922616:-|nuORF ENST00000566842.5_1_16:29918195-29922616:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2996826171875 2 541.298707 1080.58286 0.69157 0.00037435 -0.42836 -0.00023187 0.26322 0.00014248 541.298788285534 34.375 0.36409 30.28 30.074 30.438 -4.0951 37 20 2 0 0 0 0.085319 1 19747 19747 39.957 21.822 1 13167000 53731 8471 36208 37023 62426 62426 0.04579387148555725 RPHGRTVRL 9 Unmodified _RPHGRTVRL_ 0 0 0 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5560302734375 3 364.556341 1090.64719 0.82126 0.0002994 0.73371 0.00026748 1.555 0.00056688 364.55649088190467 14.562 0.11115 12.059 12.005 12.116 -2.5029 44 19 3 0 0 0 0.51371 1 7392 7392 6.6304 2.1015 1 13417000 53732 3282 36209 37024 62427 62427 0.10549587025366236 RPHGTNNPY 9 Unmodified _RPHGTNNPY_ 0 0 0 nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 nc|ENSG00000117114|O95490|ADGRL2 MSMS AL20221201_MKP_PDAC_01 4 528.5899047851562 2 528.254497 1054.49444 NaN NaN NaN NaN NaN NaN NaN 20.701 1 18.008 17.508 18.508 -2.693 0 0 0 0.82739 1 11039 11039 4.3292 2.0265 1 53733 3281 36210 37025 62428 62428 -0.030626531619191155 RPHHKILDM 9 Unmodified _RPHHKILDM_ 0 0 0 ENSG00000037474|ENST00000264670|NSUN2;nc|ENSG00000037474|Q08J23-2|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 ENSG00000037474|ENST00000264670|NSUN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.5293273925781 3 382.878204 1145.61278 0.55342 0.00021189 0.27968 0.00010709 0.83311 0.00031898 382.87831220557666 23.099 0.1925 20.32 20.166 20.359 -2.7784 15 11 2 0 0 0 0.20399 1 12486 12486 10.8 4.1691 1 3022300 53734 627 36211 37026 62429 62429 0.045800028222402034 RPHHYSIF 8 Unmodified _RPHHYSIF_ 0 0 0 nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST;ENST00000475188.1_1_7:130137788-130138338:+|nuORF;nc|ENSG00000106484|Q5EB52-3|MEST nc|ENSG00000106484|Q5EB52-2|MEST nc|ENSG00000106484|Q5EB52-2|MEST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7713012695312 2 528.772326 1055.5301 NaN NaN NaN NaN NaN NaN NaN 78.536 1 78.536 78.036 79.036 0 0 0 0 0.97444 1 43642 43642 0.69038 0 1 53735 2433 36212 37027 62430 62430 0.004554290857413434 RPHIPISKL 9 Unmodified _RPHIPISKL_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2258605957031 3 354.225709 1059.6553 -0.32146 -0.00011387 0.57927 0.00020519 0.25781 9.1324E-05 354.22579659906313 31.92 0.24262 31.95 31.866 32.109 0.030104 16 10 2 0 0 0 0.43305 1 16792 16792 10.899 4.2686 1 1834300 53736 6298 36213 37028 62431 62431 0.12785721222144275 RPHLAGTHTSL 11 Unmodified _RPHLAGTHTSL_ 0 0 0 ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM ENSG00000187790|ENST00000267430|FANCM ENSG00000187790|ENST00000267430|FANCM MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2196350097656 3 397.219395 1188.63635 0.30374 0.00012065 0.34969 0.0001389 0.65343 0.00025955 397.219718350813 23.413 0.21235 20.635 20.526 20.738 -2.7784 20 12 2 0 0 0 0.35681 1 12699 12699 14.838 10.721 1 2124500 53737 9595 36214 37029 62432 62432 0.04958139860423216 RPHLERILF 9 Unmodified _RPHLERILF_ 0 0 0 ENSG00000238243|ENST00000360358|OR2W3 ENSG00000238243|ENST00000360358|OR2W3 ENSG00000238243|ENST00000360358|OR2W3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8511352539062 2 590.851107 1179.68766 0.3625 0.00021419 0.29795 0.00017604 0.66045 0.00039023 590.8512085236553 97.897 0.26028 97.654 97.514 97.774 -0.24277 27 12 3 0 0 0 0.25681 1 53461 53461 19.257 0 1 9946500 53738 10658 36215 37030 62433 62433 0.10500508625136717 RPHNGRWIGC 10 Carbamidomethyl (C) _RPHNGRWIGC(Carbamidomethyl (C))_ RPHNGRWIGC(1) RPHNGRWIGC(55) 0 1 0 ENSG00000131652|ENST00000326266|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;nc|ENSG00000131652|Q86W42-3|THOC6 ENSG00000131652|ENST00000326266|THOC6 ENSG00000131652|ENST00000326266|THOC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.2088623046875 3 418.208724 1251.60434 1.4131 0.00059098 0.81852 0.00034231 2.2316 0.00093329 418.2088974065948 20.033 0.30721 17.376 17.174 17.481 -2.6564 47 17 4 0 0 0 0.061704 2 10591 10591;10693 55.235 44.336 1 6265600 53739 4340 36216 37031 62434;62435 62434 439 -0.011395510943884801 RPHPQRFTY 9 Unmodified _RPHPQRFTY_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5462036132812 3 401.212351 1200.61522 -0.49044 -0.00019677 0.54398 0.00021825 0.053544 2.1483E-05 401.21269238096113 19.269 0.1249 19.292 19.205 19.33 0.023106 16 7 3 0 0 0 0.46501 1 9700 9700 6.1918 3.3486 1 986190 53740 3564 36217 37032 62436 62436 0.022941745515709044 RPHPQRFTY 9 Unmodified _RPHPQRFTY_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5470275878906 3 401.212351 1200.61522 -0.085254 -3.4205E-05 0.50666 0.00020328 0.4214 0.00016907 401.21258661572705 19.379 0.30314 19.386 19.226 19.529 0.0078506 63 17 5 0 0 0 0.017075 1 9816 9816 69.338 43.341 1 36682000 53741 3564 36217 37032 62437 62437 0.022941745515709044 RPHPQRFTY 9 Unmodified _RPHPQRFTY_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2128295898438 3 401.212351 1200.61522 1.2935 0.00051899 0.061482 2.4667E-05 1.355 0.00054365 401.21241635624284 21.161 0.4481 18.468 18.205 18.653 -2.693 83 26 4 0 0 0 0.039985 2 11335 11229;11335 45.74 27.877 1 121630000 53742 3564 36217 37032 62438;62439 62439 0.022941745515709044 RPHPQRFTY 9 Unmodified _RPHPQRFTY_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25;ENST00000572021.5_1_17:54969063-54989474:-|nuORF ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3151245117188 2 601.314889 1200.61522 0.50241 0.00030211 2.2166 0.0013329 2.719 0.001635 601.3160755267446 21.163 0.20541 18.47 18.358 18.563 -2.693 18 11 2 0 0 0 0.32235 1 11296 11296 16.149 3.1066 1 2219700 53743 3564 36217 37032 62440 62440 0.022941745515709044 RPHQKSVGF 9 Unmodified _RPHQKSVGF_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000505925.1_1_5:107060760-107061060:+|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8639831542969 3 352.52968 1054.56721 0.86595 0.00030527 0.63169 0.00022269 1.4976 0.00052796 352.52982508111586 15.809 0.17673 13.282 13.196 13.373 -2.5273 56 43 2 0 0 0 0.15117 1 8130 8130 27.223 14.983 1 3377300 53744 9567 36218 37033 62441 62441 0.042111006315280974 RPHRLMES 8 Unmodified _RPHRLMES_ 0 0 0 REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1027.011962890625 1 1025.53091 1024.52363 -0.056336 -5.7774E-05 -0.33618 -0.00034476 -0.39251 -0.00040253 1025.530855485873 74.423 0.33378 74.423 74.271 74.604 0 24 14 2 0 0 0 0.80232 1 41373 41373 5.2307 0 1 1259800 + 53745 22396 36219 37034 62442 62442 0.012351678627283036 RPHRLMES 8 Unmodified _RPHRLMES_ 0 0 0 REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1025.53091 1024.52363 -0.056336 -5.7774E-05 -0.33618 -0.00034476 -0.39251 -0.00040253 1025.530855485873 74.423 0.33378 74.423 74.271 74.604 0 -0.0021536 0.00020968 NaN 5.2307 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1259800 + 53746 22396 36219 37034 0.012351678627283036 RPHRLMES 8 Unmodified _RPHRLMES_ 0 0 0 REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B REV__nc|ENSG00000169379|Q3SXY8-3|ARL13B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1025.53091 1024.52363 0.61481 0.0006305 -0.71677 -0.00073507 -0.10196 -0.00010456 1025.5303456233394 74.904 0.52457 74.427 74.256 74.781 -0.47714 0.0021536 -0.00018063 NaN 5.2307 32 22 2 NaN NaN NaN NaN 0 NaN NaN 0 2873800 + 53747 22396 36219 37034 0.012351678627283036 RPHVEPRPL 9 Unmodified _RPHVEPRPL_ 0 0 0 ENSG00000203786|ENST00000606109|KPRP ENSG00000203786|ENST00000606109|KPRP ENSG00000203786|ENST00000606109|KPRP MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5498962402344 3 367.548964 1099.62506 0.83046 0.00030523 0.036994 1.3597E-05 0.86745 0.00031883 367.54876526862495 23.886 0.37588 21.058 20.855 21.231 -2.8273 35 22 2 0 0 0 0.25681 1 13024 13024 13.615 6.5778 1 3195400 53748 10224 36220 37035 62443 62443 0.07923362556925895 RPHVGCATY 9 Carbamidomethyl (C) _RPHVGC(Carbamidomethyl (C))ATY_ RPHVGC(1)ATY RPHVGC(50)ATY 0 1 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.755126953125 2 530.753276 1059.492 0.98685 0.00052377 -1.1296 -0.00059953 -0.14273 -7.5753E-05 530.7524983548362 19.425 0.18965 16.769 16.66 16.85 -2.6564 24 18 2 0 0 0 0.039985 1 10282 10282 49.933 23.049 1 4449700 53749 5669 36221 37036 62444 62444 578 -0.035368248912163835 RPHWNRRM 8 Unmodified _RPHWNRRM_ 0 0 0 REV__ENST00000520611.1_3_8:38684731-38684803:+|nuORF REV__ENST00000520611.1_3_8:38684731-38684803:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.5965576171875 2 576.801426 1151.5883 NaN NaN NaN NaN NaN NaN NaN 17.971 1 17.984 17.484 18.484 0.013865 0 0 0 0.97444 1 8976 8976 0.69038 0.088878 1 + 53750 28280 36222 37037 62445 62445 0.018567874593827582 RPHYGSVL 8 Unmodified _RPHYGSVL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 464.7828369140625 2 464.753601 927.49265 0.7382 0.00034308 0.94759 0.0004404 1.6858 0.00078348 464.7540310287606 28.661 0.26934 25.513 25.323 25.592 -3.1482 23 13 2 0 0 0 8.7369 1 15923 15923 20.454 3.5113 1 8691800 53751 5256 36223 37038 62446 62446 0.026003378201380656 RPHYQVKLI 9 Unmodified _RPHYQVKLI_ 0 0 0 REV__nc|ENSG00000117222|Q15291-2|RBBP5 REV__nc|ENSG00000117222|Q15291-2|RBBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2330322265625 3 385.232864 1152.67676 1.4058 0.00054156 -0.16944 -6.5272E-05 1.2364 0.00047629 385.232810839178 32.19 0.46269 28.334 28.086 28.549 -3.8562 65 26 3 0 0 0 0.21643 1 18379 18379 21.537 1.1224 1 63355000 + 53752 19091 36224 37039 62447 62447 0.10653106250833844 RPHYSLRTL 9 Unmodified _RPHYSLRTL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8876342773438 3 381.552485 1141.63563 NaN NaN NaN NaN NaN NaN NaN 27 1 27.028 26.528 27.528 0.028664 0 0 0 0.44028 1 14021 14021 17.863 6.3685 1 53753 2865 36225 37040 62448 62448 0.07047345211367428 RPIDLALLQF 10 Unmodified _RPIDLALLQF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D ENSG00000105464|ENST00000263269|GRIN2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3536376953125 2 593.353148 1184.69174 NaN NaN NaN NaN NaN NaN NaN 88.785 1 88.833 88.333 89.333 0.047852 0 0 0 0.61655 1 49395 49395 20.581 4.7337 1 53754 2325 36226 37041 62449 62449 0.10678553328170892 RPIFGGTVY 9 Unmodified _RPIFGGTVY_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2779541015625 2 505.276909 1008.53927 0.47891 0.00024198 0.80502 0.00040676 1.2839 0.00064874 505.27736993696465 49.155 0.40672 49.112 48.908 49.315 -0.04369 58 19 5 0 0 0 0.094149 1 26501 26501 34.402 14.963 1 13358000 53755 16497 36227 37042 62450 62450 0.03533777651421133 RPIFGGTVY 9 Unmodified _RPIFGGTVY_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2776794433594 2 505.276909 1008.53927 0.80294 0.00040571 0.44135 0.00022301 1.2443 0.00062871 505.27707710540506 54.745 0.52657 48.88 48.623 49.15 -5.8653 65 32 3 0 0 0 0.08691 2 34680 34680;34813 36.127 17.459 1 67186000 53756 16497 36227 37042 62451;62452 62451 0.03533777651421133 RPIFPGKHYL 10 Unmodified _RPIFPGKHYL_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.9048156738281 3 409.904747 1226.69241 -0.10338 -4.2378E-05 0.17176 7.0406E-05 0.068379 2.8029E-05 409.90478505868856 34.425 0.48903 34.452 34.224 34.713 0.027405 66 22 4 0 0 0 0.13391 2 18183 18076;18183 35.612 20.364 1 21309000 53757 2073;1743 36228 37043 62453;62454 62454 0.08813392767910955 RPIFPGKHYL 10 Unmodified _RPIFPGKHYL_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2398376464844 3 409.904747 1226.69241 0.54811 0.00022467 0.55223 0.00022636 1.1003 0.00045104 409.9049235097094 38.757 0.30803 34.306 34.164 34.472 -4.4509 31 19 2 0 0 0 0.35903 1 22905 22905 15.739 13.107 1 13765000 53758 2073;1743 36228 37043 62455 62455 0.08813392767910955 RPIFPGKHYL 10 Unmodified _RPIFPGKHYL_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MSMS AL20221201_MKP_PDAC_01 4 409.9049682617188 3 409.904747 1226.69241 NaN NaN NaN NaN NaN NaN NaN 78.348 1 72.173 71.673 72.673 -6.1757 0 0 0 0.017269 1 51280 51280 57.108 31.11 1 53759 2073;1743 36228 37043 62456 62456 0.08813392767910955 RPIFPGKHYL 10 Unmodified _RPIFPGKHYL_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MSMS AL20221201_MKP_PDAC_01 4 409.9049987792969 3 409.904747 1226.69241 NaN NaN NaN NaN NaN NaN NaN 78.723 1 72.547 72.047 73.047 -6.1757 0 0 0 0.168 1 51549 51549 39.213 23.965 1 53760 2073;1743 36228 37043 62457 62457 0.08813392767910955 RPIFPGKHYL 10 Unmodified _RPIFPGKHYL_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MSMS AL20221201_MKP_PDAC_01 4 409.9048461914062 3 409.904747 1226.69241 NaN NaN NaN NaN NaN NaN NaN 78.949 1 72.773 72.273 73.273 -6.1757 0 0 0 0.24996 1 51714 51714 28.234 17.918 1 53761 2073;1743 36228 37043 62458 62458 0.08813392767910955 RPIGHLHLAL 10 Unmodified _RPIGHLHLAL_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MSMS AL20221201_MKP_PDAC_01 4 376.2339477539062 3 376.232975 1125.6771 NaN NaN NaN NaN NaN NaN NaN 89.009 1 82.833 82.333 83.333 -6.1757 0 0 0 0.72101 1 58745 58745 15.739 2.866 1 53762 3740 36229 37044 62459 62459 0.11928525970688497 RPIIATNTY 9 Unmodified _RPIIATNTY_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7919921875 2 524.792924 1047.57129 0.16429 8.6217E-05 -0.47091 -0.00024713 -0.30663 -0.00016091 524.7926644740834 35.506 0.19421 35.506 35.38 35.574 0 16 9 2 0 0 0 0.012228 1 18774 18774 71.922 31.965 1 7100800 53763 3939 36230 37045 62460 62460 0.049411453345555856 RPIIATNTY 9 Unmodified _RPIIATNTY_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7931518554688 2 524.792924 1047.57129 -0.5179 -0.00027179 -0.26957 -0.00014147 -0.78747 -0.00041326 524.7928549368704 35.645 0.25836 35.422 35.288 35.546 -0.2224 24 11 3 0 0 0 0.015688 1 18647 18647 65.235 29.108 1 7844400 53764 3939 36230 37045 62461 62461 0.049411453345555856 RPIIATNTY 9 Unmodified _RPIIATNTY_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.793212890625 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 35.413 1 35.438 34.938 35.938 0.024967 0 0 0 0.40636 1 18719 18719 26.268 13.737 1 53765 3939 36230 37045 62462 62462 0.049411453345555856 RPIIATNTY 9 Unmodified _RPIIATNTY_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MSMS AL20221201_MKP_PDAC_01 4 524.7936401367188 2 524.792924 1047.57129 NaN NaN NaN NaN NaN NaN NaN 40.032 1 35.503 35.003 36.003 -4.5294 0 0 0 0.046065 1 23849 23849 65.235 19.214 1 53766 3939 36230 37045 62463 62463 0.049411453345555856 RPIILLDSL 9 Unmodified _RPIILLDSL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MSMS AL20221201_MKP_PDAC_01 4 520.3284301757812 2 520.329142 1038.64373 NaN NaN NaN NaN NaN NaN NaN 97.24 1 91.064 90.564 91.564 -6.1757 0 0 0 0.15549 1 64446 64446 36.127 5.4905 1 53767 8482 36231 37046 62464 62464 0.12595479408128085 RPIKTATTL 9 Unmodified _RPIKTATTL_ 0 0 0 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 ENSG00000136770|ENST00000376980|DNAJC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.0668640136719 2 500.811116 999.60768 0.27118 0.00013581 -0.42663 -0.00021366 -0.15546 -7.7854E-05 500.8107586024241 23.231 0.22328 20.453 20.388 20.611 -2.7784 33 22 2 0 0 0 0.061392 1 12578 12578 36.506 14.969 1 9707600 53768 4853 36232 37047 62465 62465 0.10786022231263814 RPIKTEMAHQL 11 Unmodified _RPIKTEMAHQL_ 0 0 0 nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.9119873046875 3 441.911573 1322.71289 0.35345 0.0001562 -1.3637 -0.00060263 -1.0102 -0.00044644 441.91142406299934 24.705 0.16513 21.822 21.723 21.888 -2.8831 13 8 2 0 0 0 0.50515 2 13446 13435;13446 12.856 6.4991 1 2329800 53769 851 36233 37048 62466;62467 62467 0.06444195365384076 RPIKWDKSY 9 Unmodified _RPIKWDKSY_ 0 0 0 ENSG00000179152|ENST00000342649|TCAIM;nc|ENSG00000179152|Q8N3R3-4|TCAIM;ENST00000462230.5_1_3:44409048-44409219:+|nuORF;ENST00000431657.5_1_3:44409048-44432742:+|nuORF ENSG00000179152|ENST00000342649|TCAIM ENSG00000179152|ENST00000342649|TCAIM MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2217102050781 3 398.220624 1191.64004 -9.1727E-05 -3.6527E-08 0.05108 2.0341E-05 0.050988 2.0305E-05 398.22016115536974 25.463 0.44777 22.579 22.355 22.803 -2.8831 48 24 3 0 0 0 0.080011 1 13925 13925 37.771 30.162 1 5685400 53770 8816 36234 37049 62468 62468 0.05188809634273639 RPIKYELL 8 Unmodified _RPIKYELL_ 0 0 0 REV__ENSG00000242689|ENST00000361987|CNTF REV__ENSG00000242689|ENST00000361987|CNTF MSMS AL20221201_MKP_PDAC_01 4 516.3163452148438 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 108.52 1 102.34 101.84 102.84 -6.1757 0 0 0 0.97444 1 72525 72525 0.79363 0 1 + 53771 24464 36235 37050 62469 62469 0.10343210236646883 RPILIIITL 9 Unmodified _RPILIIITL_ 0 0 0 nc|ENSG00000078900|O15350-12|TP73;ENST00000603364.5_1_1:3607439-3646013:+|nuORF;nc|ENSG00000078900|O15350-4|TP73;nc|ENSG00000078900|O15350-10|TP73;nc|ENSG00000078900|O15350-9|TP73;nc|ENSG00000078900|O15350-3|TP73;nc|ENSG00000078900|O15350-2|TP73;nc|ENSG00000078900|O15350-6|TP73;nc|ENSG00000078900|O15350-5|TP73;nc|ENSG00000078900|O15350-13|TP73;nc|ENSG00000078900|O15350-11|TP73;nc|ENSG00000078900|O15350-8|TP73;ENSG00000078900|ENST00000378295|TP73 nc|ENSG00000078900|O15350-12|TP73 nc|ENSG00000078900|O15350-12|TP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3662719726562 2 526.365527 1050.7165 1.8801 0.00098964 0.1871 9.8481E-05 2.0672 0.0010881 526.3655562218155 94.002 0.27221 94.016 93.811 94.083 0.014244 19 10 2 0 0 0 0.32871 1 52277 52277 15.847 0 1 1379600 53772 1258 36236 37051 62470 62470 0.19317233201559247 RPILIVYLL 9 Unmodified _RPILIVYLL_ 0 0 0 REV__nc|ENSG00000272987|P0C617|OR5AL1 REV__nc|ENSG00000272987|P0C617|OR5AL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2451782226562 3 367.24611 1098.7165 NaN NaN NaN NaN NaN NaN NaN 70.848 1 70.37 69.87 70.87 -0.47735 0 0 0 0.85798 1 38769 38769 0.23584 0.095952 1 + 53773 30000 36237 37052 62471 62471 0.17109233201563256 RPILTIITL 9 Unmodified _RPILTIITL_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.D259V|1|0.39|ENSG00000141510|chr17:7674187-7674187|T/A|missense_variant ENSG00000141510|ENST00000269305|TP53 ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3473510742188 2 520.347335 1038.68012 -0.13831 -7.1971E-05 0.062049 3.2287E-05 -0.076265 -3.9684E-05 520.3471476848927 83.775 0.36893 83.838 83.653 84.022 0.063171 32 14 3 0 0 0 0.0090524 1 46315 46315 85.642 24.284 1 74676000 53774 5341 36238 37053 62472 62472 0.1623235630486306 RPILTIITL 9 Unmodified _RPILTIITL_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53;TP53|p.D259V|1|0.39|ENSG00000141510|chr17:7674187-7674187|T/A|missense_variant ENSG00000141510|ENST00000269305|TP53 ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3482055664062 2 520.347335 1038.68012 0.50231 0.00026138 0.58358 0.00030367 1.0859 0.00056504 520.3475562786712 99.07 0.25875 92.894 92.716 92.974 -6.1757 39 16 4 0 0 0 0.020973 1 65848 65848 62.573 16.552 1 357880000 53775 5341 36238 37053 62473 62473 0.1623235630486306 RPILVLRG 8 Unmodified _RPILVLRG_ 0 0 0 ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2 ENSG00000186765|ENST00000417245|FSCN2 ENSG00000186765|ENST00000417245|FSCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.3108520507812 2 462.311087 922.60762 NaN NaN NaN NaN NaN NaN NaN 103.78 1 103.73 103.23 104.23 -0.048737 0 0 0 0.97444 1 57629 57629 0.69038 0 1 53776 9502 36239 37054 62474 62474 0.14322067021953444 RPINLEPIF 9 Unmodified _RPINLEPIF_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8827819824219 3 366.88172 1097.62333 NaN NaN NaN NaN NaN NaN NaN 45.943 1 45.915 45.415 46.415 -0.028011 0 0 0 0.84564 1 24703 24703 1.0715 0.10919 1 + 53777 177 36240 37055 62475 62475 0.07842308748308824 RPINNMTATY 10 Oxidation (M) _RPINNM(Oxidation (M))TATY_ RPINNM(1)TATY RPINNM(48)TATY 0 0 1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2915649414062 2 598.790055 1195.56556 -0.48113 -0.00028809 -0.24331 -0.00014569 -0.72444 -0.00043379 598.7898968434912 21.12 0.22601 21.12 21.011 21.237 0 81 35 3 0 0 0 0.095786 1 10626 10626 47.594 30.652 1 2773300 53778 4676 36241 37056 62476 62476 846 -0.02440321239396326 RPINNMTATY 10 Oxidation (M) _RPINNM(Oxidation (M))TATY_ RPINNM(1)TATY RPINNM(64)TATY 0 0 1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7908325195312 2 598.790055 1195.56556 -0.34644 -0.00020744 0.89457 0.00053566 0.54813 0.00032822 598.7906481744197 24.024 0.40933 21.197 20.983 21.392 -2.8273 51 23 3 0 0 0 0.038363 2 13100 12980;13100 63.961 27.833 1 8575700 53779 4676 36241 37056 62477;62478 62478 846 -0.02440321239396326 RPINNMTATY 10 Unmodified _RPINNMTATY_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7935180664062 2 590.792598 1179.57064 0.54342 0.00032105 0.38016 0.00022459 0.92357 0.00054564 590.792882184233 35.279 0.34282 31.184 31.041 31.384 -4.0951 38 20 2 0 0 0 0.022967 2 20548 20419;20548 72.968 34.994 1 24456000 53780 4676 36241 37057 62479;62480 62480 -0.011960173767647575 RPIRKCLVF 9 Unmodified _RPIRKCLVF_ 0 0 0 ENST00000304916.3_1_8:127565347-127565449:-|nuORF ENST00000304916.3_1_8:127565347-127565449:-|nuORF ENST00000304916.3_1_8:127565347-127565449:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.898193359375 3 377.898828 1130.67465 -0.085868 -3.2449E-05 -0.61419 -0.0002321 -0.70006 -0.00026455 377.89850430314567 35.621 0.78722 35.646 35.162 35.949 0.024971 77 37 3 0 0 0 0.60485 1 18697 18697 1.0715 1.0715 1 7649400 53781 11609 36242 37058 62481 62481 0.11454354241391229 RPIRKGDIF 9 Unmodified _RPIRKGDIF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8881530761719 3 367.889097 1100.64546 0.11776 4.3322E-05 -0.33912 -0.00012476 -0.22136 -8.1437E-05 367.8889322573584 23.257 0.27726 23.275 23.116 23.393 0.01749 35 13 3 0 0 0 0.29507 1 11946 11946 17.443 9.8337 1 26239000 53782 7318 36243 37059 62482 62482 0.09916533216733114 RPIRKGDIF 9 Unmodified _RPIRKGDIF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3303833007812 2 551.330008 1100.64546 0.075985 4.1893E-05 -0.52044 -0.00028694 -0.44446 -0.00024504 551.3298434872434 26.034 0.22974 23.083 22.984 23.214 -2.9511 21 13 2 0 0 0 0.48396 1 14274 14274 8.1555 0.8663 1 7893200 53783 7318 36243 37059 62483 62483 0.09916533216733114 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5679626464844 3 391.568135 1171.68258 NaN NaN NaN NaN NaN NaN NaN 37.992 1 37.72 37.22 38.22 -0.27133 0 0 0 0.81961 1 19988 19988 5.2969 2.3016 1 53784 293 36244 37060 62484 62484 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.848876953125 2 586.848564 1171.68258 0.11706 6.8699E-05 -0.5022 -0.00029471 -0.38513 -0.00022602 586.848241297166 37.545 0.37938 37.562 37.394 37.773 0.01704 63 18 5 0 0 0 0.010301 2 19885 19885;19995 78.149 50.521 1 186820000 53785 293 36244 37060 62485;62486 62485 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5680541992188 3 391.568135 1171.68258 -0.19605 -7.6768E-05 -0.051077 -2E-05 -0.24713 -9.6768E-05 391.5680690752268 37.545 0.44528 37.562 37.394 37.839 0.01704 68 21 5 0 0 0 0.040683 2 19893 19893;20006 49.554 32.506 1 276900000 53786 293 36244 37060 62487;62488 62487 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5682983398438 3 391.568135 1171.68258 0.96048 0.00037609 -0.1176 -4.6048E-05 0.84288 0.00033004 391.5680577348628 42.192 0.59034 37.507 37.217 37.807 -4.6846 138 37 5 0 0 0 0.062454 3 25298 25298;25425;25567 41.956 28.437 1 675860000 53787 293 36244 37060 62489;62490;62491 62489 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8485107421875 2 586.848564 1171.68258 0.60543 0.0003553 -0.46845 -0.00027491 0.13698 8.0387E-05 586.8482839300324 42.2 0.51245 37.516 37.252 37.764 -4.6846 126 32 5 0 0 0 0.025842 3 25312 25312;25449;25591 64.236 41.088 1 499670000 53788 293 36244 37060 62492;62493;62494 62492 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5683898925781 3 391.568135 1171.68258 0.96213 0.00037674 0.44885 0.00017576 1.411 0.0005525 391.56826857218425 43.475 0.40095 38.71 38.618 39.019 -4.7648 40 24 2 0 0 0 0.1685 1 26520 26520 26.268 14.773 1 9881900 53789 293 36244 37060 62495 62495 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20221201_MKP_PDAC_01 4 391.9028930664062 3 391.568135 1171.68258 NaN NaN NaN NaN NaN NaN NaN 42.763 1 38.079 37.579 38.579 -4.6846 0 0 0 0.51965 1 25873 25873 15.248 0 1 53790 293 36244 37060 62496 62496 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20221201_MKP_PDAC_01 4 391.5691833496094 3 391.568135 1171.68258 NaN NaN NaN NaN NaN NaN NaN 43.99 1 39.225 38.725 39.725 -4.7648 0 0 0 0.39118 1 26790 26790 20.415 8.9198 1 53791 293 36244 37060 62497 62497 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20221201_MKP_PDAC_01 4 391.5685424804688 3 391.568135 1171.68258 NaN NaN NaN NaN NaN NaN NaN 44.188 1 39.336 38.836 39.836 -4.852 0 0 0 0.63508 1 26942 26942 11.495 5.7113 1 53792 293 36244 37060 62498 62498 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20221201_MKP_PDAC_01 4 391.5692443847656 3 391.568135 1171.68258 NaN NaN NaN NaN NaN NaN NaN 45.126 1 40.274 39.774 40.774 -4.852 0 0 0 0.65645 1 27645 27645 10.8 6.2706 1 53793 293 36244 37060 62499 62499 0.10360204762514513 RPIRLQVQY 9 Unmodified _RPIRLQVQY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 586.848564 1171.68258 -0.052071 -3.0558E-05 -1.0943 -0.00064217 -1.1463 -0.00067272 586.8482457342147 37.932 0.062538 37.661 37.618 37.681 -0.27133 0.081324 -0.00072258 NaN 78.149 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 946970 53794 293 36244 37060 0.10360204762514513 RPIRNLEVKF 10 Unmodified _RPIRNLEVKF_ 0 0 0 ENSG00000184254|ENST00000329841|ALDH1A3;ENST00000560555.1_1_15:101420112-101432306:+|nuORF ENSG00000184254|ENST00000329841|ALDH1A3 ENSG00000184254|ENST00000329841|ALDH1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5907592773438 3 424.59094 1270.75099 -0.24099 -0.00010232 0.47256 0.00020064 0.23156 9.832E-05 424.5910277327491 36.604 0.23102 36.625 36.536 36.767 0.021542 25 10 3 0 0 0 0.52659 1 19403 19403 14.957 4.0582 1 6387700 53795 9235 36245 37061 62500 62500 0.12644449342337793 RPIRQILYL 9 Unmodified _RPIRQILYL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2483520507812 3 391.248514 1170.72371 0.39344 0.00015393 -0.25063 -9.8059E-05 0.14281 5.5874E-05 391.24838033519865 52.168 0.30908 52.109 51.939 52.248 -0.058918 46 14 4 0 0 0 0.042911 2 28309 28208;28309 36.506 23.634 1 20923000 53796 8793 36246 37062 62501;62502 62502 0.1451796580199698 RPIRQILYL 9 Unmodified _RPIRQILYL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.369873046875 2 586.369133 1170.72371 0.73634 0.00043177 -0.53671 -0.00031471 0.19963 0.00011706 586.3687776075811 52.156 0.32866 52.097 51.939 52.267 -0.058918 45 15 4 0 0 0 0.16226 1 28224 28224 26.884 6.43 1 17257000 53797 8793 36246 37062 62503 62503 0.1451796580199698 RPIRQILYL 9 Unmodified _RPIRQILYL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.58349609375 3 391.248514 1170.72371 1.4733 0.00057643 0.097797 3.8263E-05 1.5711 0.00061469 391.24872682406476 89.344 0.60338 83.169 82.815 83.418 -6.1757 83 33 3 0 0 0 0.042911 3 58937 58798;58937;59070 36.506 19.064 1 43926000 53798 8793 36246 37062 62504;62505;62506 62505 0.1451796580199698 RPIRQILYL 9 Unmodified _RPIRQILYL_ 0 0 0 ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K ENSG00000178982|ENST00000248342|EIF3K ENSG00000178982|ENST00000248342|EIF3K MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.369140625 2 586.369133 1170.72371 1.1178 0.00065543 -0.45511 -0.00026686 0.66267 0.00038857 586.3687537627287 89.308 0.62352 83.132 82.846 83.47 -6.1757 80 34 3 0 0 0 0.013323 3 58935 58811;58935;59057 71.134 44.25 1 41690000 53799 8793 36246 37062 62507;62508;62509 62508 0.1451796580199698 RPIRQQLLY 9 Unmodified _RPIRQQLLY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2402954101562 3 396.240018 1185.69823 -0.069094 -2.7378E-05 -0.16084 -6.373E-05 -0.22993 -9.1108E-05 396.2399024349725 33.614 0.28589 33.643 33.483 33.769 0.028934 26 12 3 0 0 0 0.2143 1 17678 17678 20.415 0 1 4356200 53800 1209 36247 37063 62510 62510 0.11280491279580929 RPIRQQLLY 9 Unmodified _RPIRQQLLY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8557739257812 2 593.85639 1185.69823 -0.068367 -4.06E-05 -0.32959 -0.00019573 -0.39796 -0.00023633 593.856353903111 33.632 0.17762 33.661 33.543 33.72 0.028934 13 7 2 0 0 0 0.32871 1 17694 17694 15.847 7.937 1 3487700 53801 1209 36247 37063 62511 62511 0.11280491279580929 RPIRQQLLY 9 Unmodified _RPIRQQLLY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8556518554688 2 593.85639 1185.69823 0.9434 0.00056024 -1.4353 -0.00085234 -0.49187 -0.0002921 593.8552852642008 37.633 0.29017 33.264 33.091 33.381 -4.3689 27 17 2 0 0 0 0.2001 1 22078 22078 23.148 5.0134 1 7519100 53802 1209 36247 37063 62512 62512 0.11280491279580929 RPIRQQLLY 9 Unmodified _RPIRQQLLY_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2405700683594 3 396.240018 1185.69823 1.3856 0.00054902 -0.48546 -0.00019236 0.9001 0.00035666 396.2395839789591 37.614 0.32646 33.245 33.11 33.437 -4.3689 36 19 2 0 0 0 0.10734 1 22090 22090 23.79 9.3844 1 9738200 53803 1209 36247 37063 62513 62513 0.11280491279580929 RPISDFLTL 9 Unmodified _RPISDFLTL_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3062744140625 2 531.303124 1060.5917 0.30507 0.00016209 0.24765 0.00013158 0.55272 0.00029366 531.3035822543352 74.193 0.2476 74.237 74.116 74.364 0.043983 18 10 2 0 0 0 0.076472 1 40879 40879 41.84 3.8656 1 3655100 53804 7825 36248 37064 62514 62514 0.06382315994369492 RPISKQDPF 9 Unmodified _RPISKQDPF_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENST00000496144.5_1_8:100515159-100589873:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MSMS AL20221201_MKP_PDAC_01 4 363.5361633300781 3 363.201341 1086.58219 NaN NaN NaN NaN NaN NaN NaN 31.046 1 27.549 27.049 28.049 -3.497 0 0 0 0.6032 1 17556 17556 12.241 4.6317 1 53805 16193 36249 37065 62515 62515 0.042365477088424086 RPISTAEY 8 Unmodified _RPISTAEY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7429809570312 2 468.742899 935.471246 0.052368 2.4547E-05 0.49294 0.00023106 0.5453 0.00025561 468.7429579843549 23.391 0.26731 23.391 23.222 23.489 0 17 12 2 0 0 0 0.72664 1 11897 11897 14.838 6.9281 1 598570 53806 263 36250 37066 62516 62516 0.000929080007608718 RPITDSPVL 9 Unmodified _RPITDSPVL_ 0 0 0 nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2873840332031 2 499.287474 996.560395 0.23732 0.00011849 -0.58928 -0.00029422 -0.35196 -0.00017573 499.287261038231 42.086 0.53701 42.086 41.864 42.401 0 95 27 5 0 0 0 0.05483 3 22694 22694;22805;22911 43.772 14.691 1 106950000 53807 633 36251 37067 62517;62518;62519 62517 0.061977429602734446 RPITDSPVL 9 Unmodified _RPITDSPVL_ 0 0 0 nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B nc|ENSG00000038274|Q9NZL9-2|MAT2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2896423339844 2 499.287474 996.560395 1.6752 0.00083641 -0.20159 -0.00010065 1.4736 0.00073576 499.2874451895961 47.621 0.69772 42.387 42.043 42.74 -5.2339 155 41 5 0 0 0 0.023481 3 29373 29373;29504;29640 60.074 16.216 1 142210000 53808 633 36251 37067 62520;62521;62522 62520 0.061977429602734446 RPITERSLL 9 Unmodified _RPITERSLL_ 0 0 0 ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8280029296875 2 542.827298 1083.64004 -0.46967 -0.00025495 0.23298 0.00012647 -0.23669 -0.00012848 542.8275935325491 34.481 0.23983 34.289 34.2 34.44 -0.19131 25 10 3 0 0 0 0.060956 1 18013 18013 42.312 7.9108 1 8950700 53809 8058 36252 37068 62523 62523 0.10156809634281672 RPITERSLL 9 Unmodified _RPITERSLL_ 0 0 0 ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2205810546875 3 362.220624 1083.64004 -0.28279 -0.00010243 -0.35765 -0.00012955 -0.64044 -0.00023198 362.2207297031094 34.506 0.21349 34.315 34.226 34.44 -0.19132 22 9 3 0 0 0 0.024189 1 18027 18027 48.073 25.298 1 5282700 53810 8058 36252 37068 62524 62524 0.10156809634281672 RPITERSLL 9 Unmodified _RPITERSLL_ 0 0 0 ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2221069335938 3 362.220624 1083.64004 1.4121 0.00051148 1.5652 0.00056695 2.9773 0.0010784 362.2211926959863 38.313 0.24633 33.944 33.765 34.012 -4.3689 26 14 3 0 0 0 0.024189 1 22539 22539 48.073 25.298 1 36299000 53811 8058 36252 37068 62525 62525 0.10156809634281672 RPITERSLL 9 Unmodified _RPITERSLL_ 0 0 0 ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 ENSG00000171055|ENST00000405912|FEZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.82861328125 2 542.827298 1083.64004 0.55727 0.0003025 2.802 0.001521 3.3593 0.0018235 542.8286236984824 38.308 0.35512 33.939 33.795 34.15 -4.3689 36 21 2 0 0 0 0.11005 1 22541 22541 32.037 3.543 1 30737000 53812 8058 36252 37068 62526 62526 0.10156809634281672 RPITGTHLY 9 Unmodified _RPITGTHLY_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF;ENST00000488084.1_1_2:96861046-96873890:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2938842773438 2 529.293091 1056.57163 1.0518 0.00055671 -0.30836 -0.00016321 0.74344 0.0003935 529.2928817789742 30.461 0.39633 26.964 26.757 27.153 -3.497 41 19 3 0 0 0 0.067618 2 17130 17130;17255 51.63 11.672 1 34508000 53813 1382 36253 37069 62527;62528 62527 0.04560565054453036 RPITGTHLY 9 Unmodified _RPITGTHLY_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF;ENST00000488084.1_1_2:96861046-96873890:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1980895996094 3 353.197819 1056.57163 1.7369 0.00061347 -0.26813 -9.4704E-05 1.4688 0.00051877 353.53224141005774 30.481 0.27358 26.984 26.797 27.07 -3.497 19 13 2 0 0 0 0.040733 1 17156 17156 49.527 25.737 1 12457000 53814 1382 36253 37069 62529 62529 0.04560565054453036 RPITVSYAF 9 Unmodified _RPITVSYAF_ 0 0 0 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2662353515625 2 527.290017 1052.56548 0.094814 4.9995E-05 2.3962 0.0012635 2.4911 0.0013135 527.2901575477257 54.281 0.40167 53.815 53.606 54.007 -0.46664 30 20 2 0 0 0 0.19994 1 29343 29343 12.241 1.4167 1 4572200 53815 5498 36254 37070 62530 62530 0.04130046822888289 RPITVSYAF 9 Unmodified _RPITVSYAF_ 0 0 0 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 ENSG00000143368|ENST00000271628|SF3B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.29150390625 2 527.290017 1052.56548 0.93102 0.00049091 0.87818 0.00046305 1.8092 0.00095397 527.2905904655878 59.71 0.49518 53.595 53.357 53.852 -6.1147 36 27 2 0 0 0 0.13231 1 38338 38338 29.841 4.4413 1 201420000 53816 5498 36254 37070 62531 62531 0.04130046822888289 RPKAKEIQL 9 Unmodified _RPKAKEIQL_ 0 0 0 nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5614624023438 3 361.560869 1081.66078 1.8208 0.00065834 0.33362 0.00012062 2.1545 0.00077896 361.56092108477344 21.701 0.3546 18.966 18.786 19.14 -2.7348 56 19 4 0 0 0 0.36964 1 11611 11611 18.373 0 1 14631000 53817 2049 36255 37071 62532 62532 0.12321400013956918 RPKAKGGLASL 11 Unmodified _RPKAKGGLASL_ 0 0 0 nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 nc|ENSG00000185024|Q92994-7|BRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.2174377441406 3 366.564502 1096.67168 1.8374 0.00067352 -2.2485 -0.00082422 -0.41112 -0.0001507 366.56416190345345 21.461 0.26205 18.726 18.62 18.882 -2.7348 45 25 3 0 0 0 0.29799 1 11449 11449 6.6235 1.7264 1 4532200 53818 9320 36256 37072 62533 62533 0.1272080238820763 RPKALLIVLGN 11 Unmodified _RPKALLIVLGN_ 0 0 0 nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MSMS AL20221201_MKP_PDAC_01 4 597.390869140625 2 597.390065 1192.76558 NaN NaN NaN NaN NaN NaN NaN 108.06 1 101.89 101.39 102.39 -6.1757 0 0 0 0.94307 1 72238 72238 0.30703 0.03801 1 53819 1101 36257 37073 62534 62534 0.1769052149052186 RPKALLIVLGN 11 Unmodified _RPKALLIVLGN_ 0 0 0 nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MSMS AL20221201_MKP_PDAC_01 4 597.3902587890625 2 597.390065 1192.76558 NaN NaN NaN NaN NaN NaN NaN 108.81 1 102.64 102.14 103.14 -6.1757 0 0 0 0.94184 1 72703 72703 1.1933 0.79263 1 53820 1101 36257 37073 62535 62535 0.1769052149052186 RPKALLIVLGN 11 Unmodified _RPKALLIVLGN_ 0 0 0 nc|ENSG00000073146|Q9BXT6-2|MOV10L1;nc|ENSG00000073146|Q9BXT6-5|MOV10L1;ENSG00000073146|ENST00000262794|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MSMS AL20221201_MKP_PDAC_01 4 597.3916015625 2 597.390065 1192.76558 NaN NaN NaN NaN NaN NaN NaN 109.95 1 103.78 103.28 104.28 -6.1757 0 0 0 0.94307 1 73404 73404 0.30703 0 1 53821 1101 36257 37073 62536 62536 0.1769052149052186 RPKALTQVL 9 Unmodified _RPKALTQVL_ 0 0 0 ENSG00000116586|ENST00000368305|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF ENSG00000116586|ENST00000368305|LAMTOR2 ENSG00000116586|ENST00000368305|LAMTOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3271484375 2 513.326934 1024.63931 0.27387 0.00014059 0.31494 0.00016167 0.58882 0.00030226 513.3270935073347 34.884 0.26526 34.911 34.774 35.039 0.027401 35 11 4 0 0 0 0.07087 1 18379 18379 39.95 9.7249 1 13271000 53822 3231 36258 37074 62537 62537 0.12798014985219197 RPKALTQVL 9 Unmodified _RPKALTQVL_ 0 0 0 ENSG00000116586|ENST00000368305|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF ENSG00000116586|ENST00000368305|LAMTOR2 ENSG00000116586|ENST00000368305|LAMTOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3270874023438 2 513.326934 1024.63931 0.74287 0.00038133 -0.12943 -6.6438E-05 0.61344 0.0003149 513.326866203612 39.108 0.39587 34.657 34.445 34.84 -4.4509 46 25 2 0 0 0 0.06294 1 23063 23063 41.84 18.691 1 43094000 53823 3231 36258 37074 62538 62538 0.12798014985219197 RPKALTQVL 9 Unmodified _RPKALTQVL_ 0 0 0 ENSG00000116586|ENST00000368305|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2;nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF ENSG00000116586|ENST00000368305|LAMTOR2 ENSG00000116586|ENST00000368305|LAMTOR2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.326934 1024.63931 -0.44211 -0.00022695 1.1384 0.00058437 0.69629 0.00035742 513.3277693480757 35.178 0.14873 34.955 34.83 34.979 -0.2224 0.11429 0.00105 NaN 41.84 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 506250 53824 3231 36258 37074 0.12798014985219197 RPKAQPTTL 9 Unmodified _RPKAQPTTL_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.3007202148438 2 506.300916 1010.58728 -0.94106 -0.00047646 1.0684 0.00054093 0.12733 6.4467E-05 506.3015822470495 17.622 0.049942 17.636 17.592 17.642 0.013865 15 11 2 0 0 0 0.56345 1 8777 8777 3.5965 1.5367 1 418980 53825 6734 36259 37075 62539 62539 0.08240851571463281 RPKAQPTTL 9 Unmodified _RPKAQPTTL_ 0 0 0 nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27;ENST00000514280.1_1_5:79646842-79647379:-|nuORF nc|ENSG00000160563|Q6P2C8-2|MED27 nc|ENSG00000160563|Q6P2C8-2|MED27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.301513671875 2 506.300916 1010.58728 0.6658 0.00033709 -0.048463 -2.4537E-05 0.61734 0.00031256 506.3007649313136 18.468 0.27056 15.847 15.709 15.98 -2.6215 46 28 2 0 0 0 0.039985 1 9733 9733 49.933 11.959 1 2927600 53826 6734 36259 37075 62540 62540 0.08240851571463281 RPKAVREQL 9 Unmodified _RPKAVREQL_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2247924804688 3 366.224368 1095.65128 0.80203 0.00029372 0.54104 0.00019814 1.3431 0.00049186 366.22464831966926 16.326 0.22415 13.769 13.65 13.874 -2.557 47 28 3 0 0 0 0.13639 1 8410 8410 29.437 18.638 1 4529400 53827 8007 36260 37076 62541 62541 0.10727631728400411 RPKDPNNLL 9 Unmodified _RPKDPNNLL_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.8037109375 2 533.803823 1065.59309 -0.38221 -0.00020403 0.11027 5.886E-05 -0.27194 -0.00014517 533.8038817643018 27.013 0.37142 27.013 26.824 27.196 0 49 17 4 0 0 0 0.018301 2 13869 13869;13972 65.235 10.461 1 41968000 53828 9922 36261 37077 62542;62543 62542 0.06291950083118536 RPKDPNNLL 9 Unmodified _RPKDPNNLL_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.2049865722656 3 356.204974 1065.59309 -0.59038 -0.0002103 0.70512 0.00025117 0.11473 4.0869E-05 356.2052259148045 27.008 0.37142 27.008 26.824 27.196 0 35 17 3 0 0 0 0.03568 1 13902 13902 40.239 24.991 1 5825200 53829 9922 36261 37077 62544 62544 0.06291950083118536 RPKDPNNLL 9 Unmodified _RPKDPNNLL_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8038330078125 2 533.803823 1065.59309 0.25068 0.00013381 0.080448 4.2944E-05 0.33113 0.00017676 533.8039963230514 26.853 0.15335 26.881 26.781 26.935 0.028664 8 6 2 0 0 0 0.07087 1 13948 13948 39.95 19.078 1 4335400 53830 9922 36261 37077 62545 62545 0.06291950083118536 RPKDPNNLL 9 Unmodified _RPKDPNNLL_ 0 0 0 ENSG00000197170|ENST00000356126|PSMD12;nc|ENSG00000197170|O00232-2|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 ENSG00000197170|ENST00000356126|PSMD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8035888671875 2 533.803823 1065.59309 0.53252 0.00028426 -0.11518 -6.1484E-05 0.41734 0.00022278 533.8037590943682 29.624 0.46505 26.322 26.141 26.606 -3.3016 61 27 3 0 0 0 0.0086209 2 16604 16604;16731 89.401 49.443 1 272830000 53831 9922 36261 37077 62546;62547 62546 0.06291950083118536 RPKEKSLVL 9 Unmodified _RPKEKSLVL_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.2291564941406 3 357.229119 1068.66553 -0.34965 -0.0001249 0.16432 5.8698E-05 -0.18533 -6.6205E-05 357.2291418031076 21.999 0.28111 21.999 21.882 22.163 0 79 24 4 0 0 0 0.19349 1 11148 11148 23.801 5.0798 1 16538000 53832 9379 36262 37078 62548 62548 0.13394284156697722 RPKEKSLVL 9 Unmodified _RPKEKSLVL_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.2291870117188 3 357.229119 1068.66553 -0.2223 -7.9414E-05 0.60749 0.00021701 0.38518 0.0001376 357.22933233912727 21.853 0.32409 21.876 21.728 22.052 0.022894 42 14 4 0 0 0 0.20389 2 11072 11072;11167 22.775 4.0537 1 10551000 53833 9379 36262 37078 62549;62550 62549 0.13394284156697722 RPKEKSLVL 9 Unmodified _RPKEKSLVL_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2278137207031 3 357.229119 1068.66553 0.050088 1.7893E-05 0.012037 4.3001E-06 0.062125 2.2193E-05 357.22904302706706 21.782 0.27295 21.796 21.692 21.965 0.013796 38 14 3 0 0 0 0.20389 1 11147 11147 22.775 4.9118 1 7056600 53834 9379 36262 37078 62551 62551 0.13394284156697722 RPKEKSLVL 9 Unmodified _RPKEKSLVL_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3391723632812 2 535.340041 1068.66553 0.13754 7.3632E-05 0.051208 2.7414E-05 0.18875 0.00010105 535.3401018495314 23.86 0.41788 21.033 20.867 21.284 -2.8273 58 24 3 0 0 0 0.052231 2 12891 12891;13011 55.503 13.663 1 13284000 53835 9379 36262 37078 62552;62553 62552 0.13394284156697722 RPKEKSLVL 9 Unmodified _RPKEKSLVL_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000531912.1_1_11:612647-613379:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2293395996094 3 357.229119 1068.66553 0.89547 0.00031989 0.11059 3.9508E-05 1.0061 0.0003594 357.2291112994424 23.895 0.54931 21.067 20.791 21.34 -2.8273 122 32 5 0 0 0 0.14859 1 12953 12953 28.234 9.5124 1 259100000 53836 9379 36262 37078 62554 62554 0.13394284156697722 RPKEYTVRF 9 Unmodified _RPKEYTVRF_ 0 0 0 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5587158203125 3 399.224257 1194.65094 NaN NaN NaN NaN NaN NaN NaN 26.888 1 26.917 26.417 27.417 0.028664 0 0 0 0.24069 1 13960 13960 28.234 13.276 1 53837 10302 36263 37079 62555 62555 0.061402120085631395 RPKGVELCF 9 Unmodified _RPKGVELCF_ 0 0 0 nc|ENSG00000071909|Q8WXR4-5|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;ENST00000602629.1_1_2:171225816-171400468:+|nuORF nc|ENSG00000071909|Q8WXR4-5|MYO3B nc|ENSG00000071909|Q8WXR4-5|MYO3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1922302246094 3 350.191788 1047.55354 0.87261 0.00030558 2.3829 0.00083449 3.2556 0.0011401 350.5266168221856 12.032 0.044353 9.5496 9.5235 9.5678 -2.482 13 9 2 0 0 0 0.55144 1 6072 6072 2.4985 0 1 703240 53838 13364 36264 37080 62556 62556 0.03166106808043878 RPKHGSGG 8 Unmodified _RPKHGSGG_ 0 0 0 REV__nc|ENSG00000101187|Q96BD0-2|SLCO4A1 REV__nc|ENSG00000101187|Q96BD0-2|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2147827148438 2 398.214643 794.414734 0.73649 0.00029328 0.021318 8.489E-06 0.7578 0.00030177 398.21460375889876 75.501 0.30955 75.024 74.945 75.255 -0.47714 30 16 3 0 0 0 0.81107 1 41435 41435 0 0 1 1650500 + 53839 18141 36265 37081 62557 62557 0.009303249547770065 RPKKPGQSF 9 Unmodified _RPKKPGQSF_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.80322265625 2 522.801083 1043.58761 0.24706 0.00012917 1.4325 0.0007489 1.6795 0.00087807 522.8018762027157 12.051 0.12182 9.5691 9.5029 9.6247 -2.482 69 29 3 0 0 0 0.069655 1 6053 6053 40.239 23.297 1 4080300 53840 7056;16328 36266 37082 62558 62558 0.0675627129132863 RPKKRAHSL 9 Unmodified _RPKKRAHSL_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.840087890625 2 546.841074 1091.66759 0.27093 0.00014816 -1.9107 -0.0010448 -1.6398 -0.00089669 546.8400778446191 92.351 0.32642 92.351 92.174 92.5 0 36 24 2 0 0 0 0.58865 1 51013 51013 2.0598 0 1 646670 53841 7690 36267 37083 62559 62559 0.12542757685173456 RPKKRAHSL 9 Unmodified _RPKKRAHSL_ 0 0 0 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 ENSG00000167971|ENST00000343516|CASKIN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.841074 1091.66759 0.27574 0.00015079 -1.621 -0.00088644 -1.3453 -0.00073565 546.8400447743338 92.957 0.32768 92.499 92.356 92.683 -0.4574 0.038308 0.00048021 NaN 2.0598 24 18 2 NaN NaN NaN NaN 0 NaN NaN 0 479170 53842 7690 36267 37083 0.12542757685173456 RPKKSGDMTL 10 Unmodified _RPKKSGDMTL_ 0 0 0 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 ENSG00000038219|ENST00000040738|BOD1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5445556640625 3 378.209619 1131.60703 0.65319 0.00024704 1.1374 0.00043016 1.7905 0.0006772 378.21026988348 16.363 0.27472 13.806 13.681 13.955 -2.557 57 34 2 0 0 0 0.22922 1 8481 8481 31.636 7.846 1 6879700 53843 632 36268 37084 62560 62560 0.04648859519920734 RPKLIGEEL 9 Unmodified _RPKLIGEEL_ 0 0 0 CATSPERB-ATXN3|2|fusion;CATSPERB-ATXN3|5|fusion;CATSPERB-ATXN3|4|fusion;nc|ENSG00000066427|P54252-4|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3 CATSPERB-ATXN3|2|fusion CATSPERB-ATXN3|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.816650390625 2 527.816399 1053.61824 0.48763 0.00025738 -0.01537 -8.1123E-06 0.47226 0.00024927 527.8162030933318 37.19 0.22147 37.19 37.037 37.259 0 18 10 2 0 0 0 0.053952 1 19749 19749 39.95 18.413 1 2315700 53844 50 36269 37085 62561 62561 0.09358004885712035 RPKLIGEEL 9 Unmodified _RPKLIGEEL_ 0 0 0 CATSPERB-ATXN3|2|fusion;CATSPERB-ATXN3|5|fusion;CATSPERB-ATXN3|4|fusion;nc|ENSG00000066427|P54252-4|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3 CATSPERB-ATXN3|2|fusion CATSPERB-ATXN3|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8167724609375 2 527.816399 1053.61824 -0.24176 -0.00012761 0.92791 0.00048977 0.68615 0.00036216 527.8170572724862 37.389 0.21233 37.117 36.969 37.181 -0.27133 16 8 3 0 0 0 0.171 1 19651 19651 21.537 15.331 1 1888200 53845 50 36269 37085 62562 62562 0.09358004885712035 RPKLIGEEL 9 Unmodified _RPKLIGEEL_ 0 0 0 CATSPERB-ATXN3|2|fusion;CATSPERB-ATXN3|5|fusion;CATSPERB-ATXN3|4|fusion;nc|ENSG00000066427|P54252-4|ATXN3;nc|ENSG00000066427|P54252-1|ATXN3;ENSG00000066427|ENST00000644486|ATXN3;ENST00000555816.5_1_14:92547404-92563043:-|nuORF;ENST00000556274.5_1_14:92547307-92555106:-|nuORF;nc|ENSG00000066427|P54252-3|ATXN3;ENST00000553309.5_1_14:92547307-92572896:-|nuORF;ENST00000553686.5_1_14:92547307-92572896:-|nuORF;ENST00000555958.5_1_14:92547307-92572896:-|nuORF;ENST00000554214.5_1_14:92547307-92562474:-|nuORF;nc|ENSG00000066427|P54252-5|ATXN3 CATSPERB-ATXN3|2|fusion CATSPERB-ATXN3|2|fusion MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.2666015625 2 527.816399 1053.61824 0.92501 0.00048824 -1.3439 -0.00070935 -0.41892 -0.00022111 527.8160917639839 42.076 0.53639 37.392 36.985 37.521 -4.6846 43 33 2 0 0 0 0.18811 1 25349 25349 17.113 4.8722 1 8655300 53846 50 36269 37085 62563 62563 0.09358004885712035 RPKLKKLKKLL 11 Unmodified _RPKLKKLKKLL_ 0 0 0 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 ENSG00000136982|ENST00000313655|DSCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 682.9955444335938 2 682.995032 1363.97551 NaN NaN NaN NaN NaN NaN NaN 92.256 1 91.775 91.275 92.275 -0.48092 0 0 0 0.9435 1 50427 50427 0 0 1 53847 4890 36270 37086 62564 62564 0.3080818416351576 RPKLLGGA 8 Unmodified _RPKLLGGA_ 0 0 0 REV__ENST00000553925.1_1_14:39534005-39536406:-|nuORF REV__ENST00000553925.1_1_14:39534005-39536406:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2618408203125 2 406.261062 810.507572 0.28591 0.00011615 0.98114 0.0003986 1.2671 0.00051475 406.2613734456412 16.099 0.13396 13.542 13.508 13.642 -2.557 32 22 2 0 0 0 0.80311 1 8319 8319 4.756 0 1 2002800 + 53848 28743 36271 37087 62565 62565 0.09473829688135993 RPKLLGGA 8 Unmodified _RPKLLGGA_ 0 0 0 REV__ENST00000553925.1_1_14:39534005-39536406:-|nuORF REV__ENST00000553925.1_1_14:39534005-39536406:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.260986328125 2 406.261062 810.507572 NaN NaN NaN NaN NaN NaN NaN 23.938 1 21.11 20.61 21.61 -2.8273 0 0 0 0.90769 1 12992 12992 18.135 0 1 + 53849 28743 36271 37087 62566 62566 0.09473829688135993 RPKLPEDPLL 10 Unmodified _RPKLPEDPLL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.350830078125 2 589.350606 1176.68666 -0.52945 -0.00031203 1.1591 0.00068312 0.62966 0.00037109 589.3512704580983 48.751 0.25558 48.751 48.618 48.874 0 28 11 4 0 0 0 0.03037 1 26764 26764 67.838 18.284 1 6887500 53850 7904 36272 37088 62567 62567 0.10538249465548688 RPKLPEDPLL 10 Unmodified _RPKLPEDPLL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3490600585938 2 589.350606 1176.68666 0.30755 0.00018126 0.53821 0.00031719 0.84576 0.00049845 589.3509101572083 48.951 0.28786 48.579 48.446 48.734 -0.37172 40 14 4 0 0 0 0.095786 1 26256 26256 47.594 9.4188 1 8867000 53851 7904 36272 37088 62568 62568 0.10538249465548688 RPKLPEDPLL 10 Unmodified _RPKLPEDPLL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3519287109375 2 589.350606 1176.68666 1.13 0.00066595 -0.097326 -5.7359E-05 1.0327 0.0006086 589.3507269450099 53.843 0.30082 48.038 47.918 48.219 -5.8042 32 18 2 0 0 0 0.047829 1 34089 34089 59.368 21.193 1 11918000 53852 7904 36272 37088 62569 62569 0.10538249465548688 RPKLPQTL 8 Unmodified _RPKLPQTL_ 0 0 0 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 ENSG00000106541|ENST00000419304|AGR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.80126953125 2 476.800552 951.58655 -0.069438 -3.3108E-05 1.4546 0.00069356 1.3852 0.00066045 476.80129185972476 30.152 0.23041 30.182 30.07 30.3 0.030104 16 9 2 0 0 0 0.71527 1 15749 15749 15.847 7.2539 1 898470 53853 2436 36273 37089 62570 62570 0.10882056922412175 RPKLPRYI 8 Unmodified _RPKLPRYI_ 0 0 0 REV__ENSG00000165125|ENST00000359396|TRPV6 REV__ENSG00000165125|ENST00000359396|TRPV6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8318481445312 2 521.829643 1041.64473 NaN NaN NaN NaN NaN NaN NaN 15.232 1 15.238 14.738 15.738 0.0057774 0 0 0 0.97444 1 7583 7583 0.69038 0 1 + 53854 21985 36274 37090 62571 62571 0.12557738567693377 RPKLSNAM 8 Unmodified _RPKLSNAM_ 0 0 0 nc|ENSG00000132522|Q13227-2|GPS2;ENSG00000132522|ENST00000380728|GPS2;ENST00000571697.5_1_17:7218263-7218672:-|nuORF;ENST00000571569.5_1_17:7218263-7218623:-|nuORF;ENST00000574201.1_1_17:7217587-7218431:-|nuORF;ENST00000572363.5_1_17:7217390-7218672:-|nuORF;ENST00000571098.5_1_17:7217203-7218672:-|nuORF nc|ENSG00000132522|Q13227-2|GPS2 nc|ENSG00000132522|Q13227-2|GPS2 MSMS AL20221201_MKP_PDAC_01 4 458.7567138671875 2 458.755287 915.496021 NaN NaN NaN NaN NaN NaN NaN 19.704 1 17.048 16.548 17.548 -2.6564 0 0 0 0.94494 1 10459 10459 11.64 0.81637 1 53855 4418 36275 37091 62572 62572 0.0348926460247867 RPKLYIVNL 9 Unmodified _RPKLYIVNL_ 0 0 0 nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000572976.5_1_17:79870294-79872532:-|nuORF;ENST00000574153.1_1_17:79871648-79872097:-|nuORF;ENST00000576156.1_1_17:79871830-79872373:-|nuORF nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENST00000576156.1_1_17:79871830-79872373:-|nuORF nc|ENSG00000187531|Q9NRC8-3|SIRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3508911132812 2 558.350409 1114.68626 0.66566 0.00037167 -0.36043 -0.00020125 0.30522 0.00017042 558.3503108977696 54.95 0.19582 54.881 54.764 54.96 -0.068737 16 9 2 0 0 0 0.12424 1 29846 29846 30.637 14.789 1 2462200 53856 9560;15520 36276 37092 62573 62573 0.1335087453635424 RPKNVTDSL 9 Unmodified _RPKNVTDSL_ 0 0 0 ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000548220.1_1_12:71054984-71148538:-|nuORF;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR ENST00000549107.5_1_12:71032966-71078579:-|nuORF ENST00000549107.5_1_12:71032966-71078579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.287109375 2 515.288005 1028.56146 0.073815 3.8036E-05 -0.58438 -0.00030113 -0.51057 -0.00026309 515.2876649150768 22.985 0.084087 20.206 20.166 20.25 -2.7784 5 4 2 0 0 0 0.036857 1 12413 12413 51.63 13.454 1 1950000 53857 6250 36277 37093 62574 62574 0.04831957329201941 RPKPPSATSI 10 Unmodified _RPKPPSATSI_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3065795898438 2 527.306198 1052.59784 -0.32152 -0.00016954 -0.0069674 -3.6739E-06 -0.32848 -0.00017321 527.3061391749984 21.538 0.22855 21.566 21.441 21.67 0.028357 20 13 2 0 0 0 0.6785 1 10911 10911 5.2969 2.3016 1 810290 53858 2703 36278 37094 62575 62575 0.07364834225904815 RPKPPSATSI 10 Unmodified _RPKPPSATSI_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.304931640625 2 527.306198 1052.59784 NaN NaN NaN NaN NaN NaN NaN 21.493 1 21.507 21.007 22.007 0.013796 0 0 0 0.95103 1 11010 11010 5.7319 0.97584 1 53859 2703 36278 37094 62576 62576 0.07364834225904815 RPKPPSATSI 10 Unmodified _RPKPPSATSI_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3070068359375 2 527.306198 1052.59784 0.29616 0.00015617 0.45422 0.00023951 0.75038 0.00039568 527.3065612356482 24.532 0.40364 21.698 21.463 21.866 -2.8334 53 22 3 0 0 0 0.010233 2 13371 13268;13371 87.258 45.419 1 8026800 53860 2703 36278 37094 62577;62578 62578 0.07364834225904815 RPKPPYSYI 9 Unmodified _RPKPPYSYI_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8116455078125 2 560.811116 1119.60768 0.27461 0.000154 0.12605 7.0689E-05 0.40066 0.00022469 560.8109552730687 37.328 0.35054 37.35 37.07 37.42 0.021545 34 15 3 0 0 0 0.1773 1 19753 19753 25.399 0 1 3648200 53861 7189 36279 37095 62579 62579 0.05266022231262468 RPKPPYSYI 9 Unmodified _RPKPPYSYI_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.2432250976562 2 560.811116 1119.60768 0.58128 0.00032599 0.58999 0.00033087 1.1713 0.00065686 560.811368232556 41.341 0.25924 36.733 36.513 36.772 -4.6079 23 15 2 0 0 0 0.10271 1 24807 24807 32.786 8.7651 1 11310000 53862 7189 36279 37095 62580 62580 0.05266022231262468 RPKPSSSPVIF 11 Unmodified _RPKPSSSPVIF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8482666015625 2 607.84823 1213.68191 0.11705 7.1151E-05 0.015614 9.491E-06 0.13267 8.0642E-05 607.8482489752424 38.065 0.32301 38.082 37.942 38.265 0.01704 46 14 4 0 0 0 0.047603 2 20302 20195;20302 51.415 25.737 1 21584000 53863 9909;15126 36280 37096 62581;62582 62582 0.0836136532279852 RPKPSSSPVIF 11 Unmodified _RPKPSSSPVIF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5683898925781 3 405.567912 1213.68191 -0.18532 -7.5158E-05 0.59217 0.00024017 0.40685 0.00016501 405.5680991302494 38.1 0.32301 38.117 37.942 38.265 0.01704 36 14 3 0 0 0 0.047603 2 20215 20215;20316 35.996 19.721 1 7170000 53864 9909;15126 36280 37096 62583;62584 62583 0.0836136532279852 RPKPSSSPVIF 11 Unmodified _RPKPSSSPVIF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.8473510742188 2 607.84823 1213.68191 -0.080211 -4.8756E-05 0.23191 0.00014096 0.1517 9.2208E-05 607.8481898885841 41.365 0.42367 36.757 36.528 36.952 -4.6079 64 27 3 0 0 0 0.00028183 2 24896 24732;24896 91.085 47.227 1 45861000 53865 9909;15126 36280 37096 62585;62586 62586 0.0836136532279852 RPKPSSSPVIF 11 Unmodified _RPKPSSSPVIF_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;ENST00000547987.2_1_12:53854819-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5683898925781 3 405.567912 1213.68191 0.24774 0.00010048 0.99761 0.0004046 1.2454 0.00050508 405.90266091438775 41.388 0.35754 36.78 36.566 36.923 -4.6079 55 23 3 0 0 0 0.047603 2 24756 24756;24885 35.996 23.768 1 25842000 53866 9909;15126 36280 37096 62587;62588 62587 0.0836136532279852 RPKQKVALL 9 Unmodified _RPKQKVALL_ 0 0 0 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.56884765625 3 351.569476 1051.6866 0.84956 0.00029868 -0.35441 -0.0001246 0.49515 0.00017408 351.56942377299407 24.857 0.30904 21.974 21.797 22.106 -2.8831 34 19 2 0 0 0 0.20507 2 13637 13518;13637 22.658 14.214 1 6880400 53867 4021 36281 37097 62589;62590 62590 0.1628229425623431 RPKQKVALL 9 Unmodified _RPKQKVALL_ 0 0 0 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 351.569476 1051.6866 0.035613 1.252E-05 -0.24143 -8.4879E-05 -0.20582 -7.2359E-05 351.5695663962064 22.313 0.13434 22.33 22.235 22.37 0.01749 0.17832 0.0001036 NaN 22.658 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 349060 53868 4021 36281 37097 0.1628229425623431 RPKQPGPVKL 10 Unmodified _RPKQPGPVKL_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.9046936035156 3 373.904747 1118.69241 0.078334 2.929E-05 0.56795 0.00021236 0.64628 0.00024165 373.9049549310106 19.999 0.15076 20.007 19.915 20.066 0.0078506 13 7 2 0 0 0 0.32072 1 10174 10174 22.775 19.455 1 1693600 53869 9828 36282 37098 62591 62591 0.1378139276789625 RPKQPGPVKL 10 Unmodified _RPKQPGPVKL_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.9053649902344 3 373.904747 1118.69241 1.283 0.00047971 -0.030217 -1.1298E-05 1.2528 0.00046841 373.904676129562 22.242 0.297 19.507 19.32 19.617 -2.7348 41 15 3 0 0 0 0.23548 2 11902 11902;12004 32.898 22.747 1 10569000 53870 9828 36282 37098 62592;62593 62592 0.1378139276789625 RPKRIQTSL 9 Unmodified _RPKRIQTSL_ 0 0 0 nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-5|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8966674804688 3 366.896252 1097.66693 1.3288 0.00048754 -0.004989 -1.8305E-06 1.3238 0.0004857 366.89618505148576 18.369 0.31017 15.747 15.604 15.914 -2.6215 50 26 2 0 0 0 0.42049 2 9746 9644;9746 11.495 2.5185 1 16096000 53871 16097 36283 37099 62594;62595 62595 0.12199918245482877 RPKRIRRPKID 11 Unmodified _RPKRIRRPKID_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MSMS AL20221201_MKP_PDAC_01 4 478.9744567871094 3 478.975788 1433.90553 NaN NaN NaN NaN NaN NaN NaN 15.729 1 13.201 12.701 13.701 -2.5273 0 0 0 0.94338 1 8096 8096 0.08335 0.08335 1 + 53872 18599 36284 37100 62596 62596 0.2059369854760007 RPKRPANQF 9 Unmodified _RPKRPANQF_ 0 0 0 ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B ENSG00000204435|ENST00000375882|CSNK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8814392089844 3 371.880713 1112.62031 0.73041 0.00027163 0.52616 0.00019567 1.2566 0.00046729 371.88091597936864 14.705 0.16882 12.203 12.121 12.29 -2.5029 89 28 4 0 0 0 0.16226 1 7471 7471 19.362 9.818 1 46861000 53873 10283 36285 37101 62597 62597 0.06850478414162353 RPKRPPLKEF 10 Unmodified _RPKRPPLKEF_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;ENSG00000066084|ENST00000301180|DIP2B nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2601928710938 3 423.259302 1266.75608 1.4389 0.00060901 -0.39953 -0.0001691 1.0393 0.00043991 423.25908399493306 21.081 0.26316 18.388 18.244 18.507 -2.693 25 14 2 0 0 0 0.68074 1 11219 11219 5.0475 0 1 3189000 53874 927;6717 36286 37102 62598 62598 0.13336753204976048 RPKRQKLIH 9 Unmodified _RPKRQKLIH_ 0 0 0 REV__ENSG00000139083|ENST00000396373|ETV6 REV__ENSG00000139083|ENST00000396373|ETV6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3792724609375 2 588.377823 1174.74109 1.4801 0.00087086 -0.37128 -0.00021845 1.1088 0.00065241 588.3772561399695 105.1 0.2608 98.928 98.789 99.05 -6.1757 182 42 6 0 0 0 0.61256 1 70312 70312 0.6015 0 1 15081000000 + 53875 20383 36287 37103 62599 62599 0.16071306127651042 RPKSRIQTSL 10 Unmodified _RPKSRIQTSL_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2 nc|ENSG00000103197|P49815-7|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9069213867188 3 395.906928 1184.69895 1.1528 0.00045638 -1.0814 -0.00042814 0.071342 2.8245E-05 395.90645131867234 19.367 0.27829 16.711 16.563 16.841 -2.6564 49 23 3 0 0 0 0.47059 2 10194 10194;10304 17.863 17.863 1 20002000 53876 16096 36288 37104 62600;62601 62600 0.1139928592860997 RPKVPVLQL 9 Unmodified _RPKVPVLQL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000553162.5_1_12:57881873-57883795:+|nuORF;ENST00000546481.1_1_12:57881846-57882986:+|nuORF;ENST00000550449.5_1_12:57881846-57883182:+|nuORF;ENST00000551842.5_1_12:57881873-57883359:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.3457641601562 2 525.345126 1048.6757 -0.12102 -6.3579E-05 0.82012 0.00043085 0.6991 0.00036727 525.3456342767511 51.236 0.27972 51.182 51.007 51.286 -0.053871 30 13 3 0 0 0 0.12424 1 27689 27689 30.637 5.2372 1 3825500 53877 7561 36289 37105 62602 62602 0.15330891881944808 RPKYAGYSF 9 Unmodified _RPKYAGYSF_ 0 0 0 ENST00000469110.1_1_10:49633920-49634247:+|nuORF;ENST00000471272.1_1_10:49633986-49635218:+|nuORF;ENST00000482840.1_1_10:49633920-49634652:+|nuORF;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8 ENST00000469110.1_1_10:49633920-49634247:+|nuORF ENST00000469110.1_1_10:49633920-49634247:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7782592773438 2 544.779816 1087.54508 -0.079773 -4.3459E-05 -0.96356 -0.00052493 -1.0433 -0.00056839 544.7791023517506 32.703 0.21259 32.732 32.591 32.803 0.029743 16 8 2 0 0 0 0.05447 1 17157 17157 43.858 16.975 1 3847400 53878 2507 36290 37106 62603 62603 0.00480876163078392 RPKYKLVTY 9 Unmodified _RPKYKLVTY_ 0 0 0 REV__ENST00000369146.7_1_1:149875772-149875931:-|nuORF REV__ENST00000369146.7_1_1:149875772-149875931:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9012756347656 3 389.901003 1166.68118 0.19257 7.5084E-05 -0.69694 -0.00027174 -0.50436 -0.00019665 389.9006518560576 59.474 0.28062 59.421 59.273 59.554 -0.053062 23 14 2 0 0 0 0.49272 1 32401 32401 4.897 0 1 7762200 + 53879 26028 36291 37107 62604 62604 0.10450570673765469 RPKYPGIKF 9 Unmodified _RPKYPGIKF_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2223205566406 3 369.222076 1104.6444 -0.11536 -4.2592E-05 -0.087136 -3.2172E-05 -0.20249 -7.4765E-05 369.22208350268164 32.808 0.42348 32.837 32.643 33.067 0.029747 39 18 3 0 0 0 0.08691 2 17293 17192;17293 27.223 19.068 1 14736000 53880 727 36292 37108 62605;62606 62606 0.09626318847836046 RPKYPGIKF 9 Unmodified _RPKYPGIKF_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2239074707031 3 369.222076 1104.6444 1.6303 0.00060194 0.24852 9.1758E-05 1.8788 0.0006937 369.22219377819965 36.09 0.47 31.897 31.648 32.118 -4.1928 94 28 4 0 0 0 0.05447 2 20955 20955;21080 38.615 23.366 1 67952000 53881 727 36292 37108 62607;62608 62607 0.09626318847836046 RPKYPGIKF 9 Unmodified _RPKYPGIKF_ 0 0 0 ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9 ENST00000397072.7_1_5:179665329-179706839:-|nuORF ENST00000397072.7_1_5:179665329-179706839:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.223388671875 3 369.222076 1104.6444 NaN NaN NaN NaN NaN NaN NaN 64.954 1 58.779 58.279 59.279 -6.1757 0 0 0 0.41346 1 42124 42124 13.615 6.0059 1 53882 727 36292 37108 62609 62609 0.09626318847836046 RPLAPIQTR 9 Unmodified _RPLAPIQTR_ 0 0 0 REV__ENST00000456533.1_1_7:7606895-7607081:+|nuORF REV__ENST00000456533.1_1_7:7606895-7607081:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3223266601562 2 526.322183 1050.62981 NaN NaN NaN NaN NaN NaN NaN 30.452 1 30.482 29.982 30.982 0.030106 0 0 0 0.73776 1 15922 15922 8.1555 0.24537 1 + 53883 27255 36293 37109 62610 62610 0.10652246699669377 RPLAPVTI 8 Unmodified _RPLAPVTI_ 0 0 0 REV__ENST00000379789.8_1_10:6275829-6276144:+|nuORF REV__ENST00000379789.8_1_10:6275829-6276144:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7768859863281 2 433.776545 865.538538 -0.16243 -7.0457E-05 -0.19759 -8.5712E-05 -0.36002 -0.00015617 433.77658512137873 55.811 0.21251 55.743 55.626 55.839 -0.068737 13 10 2 0 0 0 0.36356 1 30328 30328 48.346 0 1 3244900 + 53884 26299 36294 37110 62611 62611 0.10038983002368695 RPLDASDTLVF 11 Unmodified _RPLDASDTLVF_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.3278198242188 2 617.327328 1232.6401 0.35749 0.00022069 0.51743 0.00031942 0.87492 0.00054011 617.3275615142888 62.93 0.4192 62.93 62.727 63.146 0 45 17 3 0 0 0 0.17129 2 35043 35043;35145 34.222 15.785 1 4103900 53885 2986 36295 37111 62612;62613 62612 0.03308764843609424 RPLDASDTLVF 11 Unmodified _RPLDASDTLVF_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3267211914062 2 617.327328 1232.6401 0.41907 0.00025871 1.503 0.00092786 1.9221 0.0011866 617.3285471074363 63.367 0.46183 62.881 62.642 63.104 -0.48617 54 20 4 0 0 0 0.33612 1 34499 34499 24.882 5.5196 1 4441000 53886 2986 36295 37111 62614 62614 0.03308764843609424 RPLDEQQKNSF 11 Unmodified _RPLDEQQKNSF_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.5653381347656 3 454.565119 1360.67353 -0.0023924 -1.0875E-06 0.028226 1.2831E-05 0.025834 1.1743E-05 454.56493729605904 21.589 0.19353 21.589 21.485 21.679 0 35 25 2 0 0 0 0.72131 3 10896 10889;10896;10931 2.2527 1.3074 1 857490 53887 4767 36296 37112 62615;62616;62617 62616 0.007617666155283587 RPLDEQQKNSF 11 Unmodified _RPLDEQQKNSF_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20221201_MKP_PDAC_01 4 454.5653076171875 3 454.565119 1360.67353 NaN NaN NaN NaN NaN NaN NaN 24.465 1 21.637 21.137 22.137 -2.8273 0 0 0 0.34861 1 13322 13322 30.414 13.575 1 53888 4767 36296 37112 62618 62618 0.007617666155283587 RPLDQKLKY 9 Unmodified _RPLDQKLKY_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553439.5_1_14:23944769-23944856:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5638122558594 3 387.564391 1159.67134 -0.36044 -0.00013969 0.46267 0.00017931 0.10223 3.962E-05 387.56451260506094 22.801 0.2639 22.801 22.674 22.938 0 22 14 2 0 0 0 0.58499 1 11574 11574 2.2828 1.2113 1 1226800 53889 4137 36297 37113 62619 62619 0.09789382668373037 RPLDQKLKY 9 Unmodified _RPLDQKLKY_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553439.5_1_14:23944769-23944856:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5643310546875 3 387.564391 1159.67134 NaN NaN NaN NaN NaN NaN NaN 22.822 1 22.835 22.335 23.335 0.012396 0 0 0 0.326 1 11620 11620 23.801 17.609 1 53890 4137 36297 37113 62620 62620 0.09789382668373037 RPLDQKLKY 9 Unmodified _RPLDQKLKY_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553439.5_1_14:23944769-23944856:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5646362304688 3 387.564391 1159.67134 0.20773 8.0509E-05 0.60158 0.00023315 0.80931 0.00031366 387.56461354126697 25.625 0.61679 22.729 22.342 22.959 -2.8955 95 35 4 0 0 0 0.02676 2 13968 13968;14076 57.108 40.542 1 73518000 53891 4137 36297 37113 62621;62622 62621 0.09789382668373037 RPLDQKLKY 9 Unmodified _RPLDQKLKY_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553439.5_1_14:23944769-23944856:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MSMS AL20221201_MKP_PDAC_01 4 580.8436279296875 2 580.842948 1159.67134 NaN NaN NaN NaN NaN NaN NaN 25.662 1 22.71 22.21 23.21 -2.9511 0 0 0 0.12961 1 14067 14067 41.956 23.809 1 53892 4137 36297 37113 62623 62623 0.09789382668373037 RPLDTVSGL 9 Unmodified _RPLDTVSGL_ 0 0 0 nc|ENSG00000058804|Q9BTX1-3|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-4|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 nc|ENSG00000058804|Q9BTX1-3|NDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2723388671875 2 479.271824 956.529095 0.63395 0.00030384 0.58705 0.00028136 1.221 0.0005852 479.2721710793708 38.823 0.27125 38.823 38.682 38.953 0 17 11 2 0 0 0 0.06294 1 20758 20758 41.84 0 1 1911900 53893 809 36298 37114 62624 62624 0.04909169926202139 RPLEEVMQKY 10 Unmodified _RPLEEVMQKY_ 0 0 0 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5606384277344 3 431.560429 1291.65946 0.38046 0.00016419 0.048657 2.0998E-05 0.42912 0.00018519 431.8947235664264 41.27 0.20481 36.662 36.583 36.788 -4.6079 18 12 2 0 0 0 0.061704 1 24797 24797 42.068 35.031 1 12000000 53894 7594 36299 37115 62625 62625 0.02529397862872429 RPLEMIEPRTL 11 Oxidation (M) _RPLEM(Oxidation (M))IEPRTL_ RPLEM(1)IEPRTL RPLEM(43)IEPRTL 0 0 1 ENSG00000105193|ENST00000251453|RPS16;ENST00000601390.1_1_19:39926180-39926535:-|nuORF ENSG00000105193|ENST00000251453|RPS16 ENSG00000105193|ENST00000251453|RPS16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.5871276855469 3 457.586867 1369.73877 0.15096 6.9077E-05 0.69931 0.00032 0.85027 0.00038907 457.5870015920028 40.08 0.47989 39.783 39.548 40.028 -0.29716 44 22 3 0 0 0 0.096677 1 21227 21227 42.862 34.576 1 3417200 53895 2285 36300 37116 62626 62626 390 0.06869044816994574 RPLEQVTCY 9 Carbamidomethyl (C) _RPLEQVTC(Carbamidomethyl (C))Y_ RPLEQVTC(1)Y RPLEQVTC(76)Y 0 1 0 ENST00000469897.1_1_7:99051318-99054120:+|nuORF;nc|ENSG00000160917|O95639-3|CPSF4;nc|ENSG00000160917|O95639-2|CPSF4;ENSG00000160917|ENST00000292476|CPSF4 ENST00000469897.1_1_7:99051318-99054120:+|nuORF ENST00000469897.1_1_7:99051318-99054120:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2880249023438 2 583.287148 1164.55974 0.72129 0.00042072 -0.4779 -0.00027875 0.24339 0.00014197 583.2868669185586 39.538 0.3956 35.087 34.929 35.325 -4.4509 55 24 3 0 0 0 0.011671 1 23556 23556 75.761 48.132 1 28427000 53896 6768 36301 37117 62627 62627 668 -0.01595419751083682 RPLFRVLK 8 Unmodified _RPLFRVLK_ 0 0 0 REV__ENSG00000144481|ENST00000324695|TRPM8 REV__ENSG00000144481|ENST00000324695|TRPM8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8408813476562 2 514.840011 1027.66547 1.5076 0.00077616 1.4305 0.00073647 2.9381 0.0015126 514.8411244560921 103.13 0.17353 96.951 96.867 97.04 -6.1757 103 47 5 0 0 0 0.80992 1 69136 69136 0.69038 0 1 169440000 + 53897 20711 36302 37118 62628 62628 0.15274328947361937 RPLFSPTSY 9 Unmodified _RPLFSPTSY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2792358398438 2 534.279649 1066.54475 0.24757 0.00013227 0.13096 6.9971E-05 0.37854 0.00020224 534.781913461444 48.901 0.24764 48.857 48.734 48.982 -0.04369 21 12 2 0 0 0 0.044011 1 26401 26401 47.749 7.799 1 3396200 53898 1378 36303 37119 62629 62629 0.014134564432424668 RPLFTSAAL 9 Unmodified _RPLFTSAAL_ 0 0 0 ENST00000569239.5_1_16:46723617-46727095:+|nuORF;ENST00000563306.5_1_16:46723682-46729618:+|nuORF;ENSG00000091651|ENST00000219097|ORC6 ENST00000569239.5_1_16:46723617-46727095:+|nuORF ENST00000569239.5_1_16:46723617-46727095:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2857360839844 2 488.284734 974.554916 0.12757 6.2289E-05 1.1753 0.00057387 1.3029 0.00063616 488.2852165028051 54.047 0.35635 53.98 53.806 54.162 -0.066936 38 17 3 0 0 0 0.07087 1 29309 29309 39.95 10.868 1 4661700 53899 1594 36304 37120 62630 62630 0.06662064168460802 RPLGFFFL 8 Unmodified _RPLGFFFL_ 0 0 0 ENST00000283921.4_1_7:27210935-27211067:-|nuORF ENST00000283921.4_1_7:27210935-27211067:-|nuORF ENST00000283921.4_1_7:27210935-27211067:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 498.8331909179688 2 498.786913 995.559273 NaN NaN NaN NaN NaN NaN NaN 43.969 1 39.204 38.704 39.704 -4.7648 0 0 0 0.95201 1 26776 26776 10.183 0.83596 1 53900 11429 36305 37121 62631 62631 0.06131573382037914 RPLGKAASL 9 Unmodified _RPLGKAASL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000464548.1_1_3:184046470-184049185:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046592-184046874:+|nuORF nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046592-184046874:+|nuORF nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7851867675781 2 456.784902 911.55525 0.36923 0.00016866 0.88548 0.00040447 1.2547 0.00057313 456.7853909346411 20.015 0.20155 20.023 19.93 20.132 0.0078487 16 9 2 0 0 0 0.20428 1 10196 10196 22.736 6.8891 1 863370 53901 3070;16132;13646 36306 37122 62632 62632 0.09593483888306764 RPLGKAASL 9 Unmodified _RPLGKAASL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000464548.1_1_3:184046470-184049185:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046592-184046874:+|nuORF nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046592-184046874:+|nuORF nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7852783203125 2 456.784902 911.55525 0.39374 0.00017985 -0.38788 -0.00017718 0.0058641 2.6786E-06 456.7848252008063 22.752 0.39488 19.974 19.738 20.132 -2.7784 48 28 2 0 0 0 0.07087 1 12191 12191 39.95 7.6442 1 8144200 53902 3070;16132;13646 36306 37122 62633 62633 0.09593483888306764 RPLGTRLGF 9 Unmodified _RPLGTRLGF_ 0 0 0 ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;nc|ENSG00000136521|O43674-2|NDUFB5 ENST00000488002.5_1_3:179322588-179334847:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.805908203125 2 508.803626 1015.5927 0.46995 0.00023911 2.1097 0.0010734 2.5797 0.0013125 508.8047834614083 39.212 0.38669 39.224 39.021 39.408 0.011456 38 17 3 0 0 0 0.1685 1 20859 20859 26.268 5.3969 1 3265200 53903 4830 36307 37123 62634 62634 0.08552575153930775 RPLHGPVMT 9 Unmodified _RPLHGPVMT_ 0 0 0 ENST00000470882.5_1_1:161146557-161146803:-|nuORF ENST00000470882.5_1_1:161146557-161146803:-|nuORF ENST00000470882.5_1_1:161146557-161146803:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7832336425781 2 504.276386 1006.53822 1.0613 0.00053517 1.5961 0.00080488 2.6574 0.0013401 504.27519559517356 34.225 0.39489 30.24 29.984 30.379 -3.9853 55 21 4 0 0 0 0.32871 1 19662 19662 15.847 0 1 31559000 53904 13862 36308 37124 62635 62635 0.0352124001088896 RPLHKKLV 8 Unmodified _RPLHKKLV_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2389526367188 2 495.832186 989.649819 NaN NaN NaN NaN NaN NaN NaN 16.474 1 16.475 15.975 16.975 0.0010548 0 0 0 0.97444 1 8127 8127 0 0 1 53905 4066 36309 37125 62636 62636 0.15458042430327623 RPLKGRINL 9 Unmodified _RPLKGRINL_ 0 0 0 nc|ENSG00000228716|P00374-2|DHFR;ENSG00000228716|ENST00000439211|DHFR;ENST00000513048.5_1_5:79929804-79945299:-|nuORF;ENST00000513314.1_1_5:79945206-79949851:-|nuORF nc|ENSG00000228716|P00374-2|DHFR nc|ENSG00000228716|P00374-2|DHFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2335205078125 3 356.232975 1065.6771 0.95384 0.00033979 -0.27476 -9.7879E-05 0.67908 0.00024191 356.23289276880917 26.27 0.4636 23.319 23.078 23.542 -2.9511 79 25 4 0 0 0 0.16226 2 14527 14407;14527 38.176 13.185 1 94891000 53906 10604 36310 37126 62637;62638 62638 0.1468852597070054 RPLKRAAA 8 Unmodified _RPLKRAAA_ 0 0 0 REV__CON__REFSEQ:XP_932229 REV__CON__REFSEQ:XP_932229 MULTI-MSMS AL20221201_MKP_PDAC_01 4 883.5655517578125 1 882.563195 881.555919 1.2105 0.0010683 -0.87342 -0.00077085 0.33703 0.00029745 882.5622973238558 103.37 0.12275 97.192 97.115 97.238 -6.1757 42 31 2 0 0 0 0.81107 1 69304 69304 0 0 1 7689600 + + 53907 16894 36311 37127 62639 62639 0.11040323328018076 RPLKRLIPKI 10 Unmodified _RPLKRLIPKI_ 0 0 0 REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1;REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.4285888671875 2 617.429525 1232.8445 NaN NaN NaN NaN NaN NaN NaN 15.527 1 15.532 15.032 16.032 0.0057774 0 0 0 1.0061 1 7741 7741 0 0 1 + 53908 18588;27372 36312 37128 62640 62640 0.23738793515440193 RPLLAALRLRL 11 Unmodified _RPLLAALRLRL_ 0 0 0 ENST00000558265.5_2_14:103800768-103802173:+|nuORF;ENST00000558316.5_2_14:103800804-103802377:+|nuORF;ENST00000560763.5_2_14:103800597-103802258:+|nuORF ENST00000558265.5_2_14:103800768-103802173:+|nuORF ENST00000558265.5_2_14:103800768-103802173:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 646.43798828125 2 646.437881 1290.86121 NaN NaN NaN NaN NaN NaN NaN 103.8 1 97.624 97.124 98.124 -6.1757 0 0 0 0.9435 1 69564 69564 0 0 1 53909 15275 36313 37129 62641 62641 0.22741294401384948 RPLLKAITA 9 Unmodified _RPLLKAITA_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8240051269531 2 491.824027 981.633501 0.31915 0.00015697 0.53489 0.00026307 0.85404 0.00042004 491.82425730878566 34.886 0.28728 34.914 34.774 35.061 0.027401 34 12 4 0 0 0 0.03568 2 18380 18380;18483 52.268 25.385 1 12285000 53910 3769 36314 37130 62642;62643 62642 0.14194916473536523 RPLLKAITA 9 Unmodified _RPLLKAITA_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.2388000488281 2 491.824027 981.633501 0.85786 0.00042191 0.012163 5.982E-06 0.87002 0.0004279 491.8240903403643 39.344 0.43356 34.893 34.689 35.123 -4.4509 57 26 3 0 0 0 0.21564 1 23324 23324 3.9444 2.1002 1 38542000 53911 3769 36314 37130 62644 62644 0.14194916473536523 RPLLKKQL 8 Unmodified _RPLLKKQL_ 0 0 0 nc|ENSG00000177910|B4DYI2|SPATA31C2 nc|ENSG00000177910|B4DYI2|SPATA31C2 nc|ENSG00000177910|B4DYI2|SPATA31C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.3432922363281 2 498.339844 994.665135 1.6676 0.00083103 -0.37413 -0.00018644 1.2935 0.00064458 498.3395549750038 104.29 0.20079 98.116 98.032 98.233 -6.1757 53 31 2 0 0 0 0.80992 1 69850 69850 0.69038 0 1 10160000 53912 16409 36315 37131 62645 62645 0.16758909227496588 RPLLLVRG 8 Unmodified _RPLLLVRG_ 0 0 0 REV__nc|ENSG00000006282|Q8TB22|SPATA20 REV__nc|ENSG00000006282|Q8TB22|SPATA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.3117980957031 2 462.311087 922.60762 1.5713 0.00072641 -0.76655 -0.00035438 0.80472 0.00037203 462.310702143004 103.81 0.19467 97.63 97.558 97.752 -6.1757 87 52 2 0 0 0 0.80992 1 69538 69538 0.69038 0 1 14365000 + 53913 16986 36316 37132 62646 62646 0.14322067021942075 RPLMLLATAL 10 Unmodified _RPLMLLATAL_ 0 0 0 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.8591613769531 3 366.894972 1097.66309 1.8004 0.00066056 2.8233 0.0010359 4.6237 0.0016964 366.896141216597 20.923 0.15344 18.23 18.11 18.264 -2.693 13 8 2 0 0 0 0.23661 1 11107 11107 7.9454 2.2135 1 3175800 53914 2245 36317 37133 62647 62647 0.1181611242739109 RPLMLLATAL 10 Unmodified _RPLMLLATAL_ 0 0 0 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.894972 1097.66309 -0.57031 -0.00020925 3.9007 0.0014312 3.3304 0.0012219 366.8962111382332 17.973 0.070545 17.987 17.951 18.021 0.013865 -0.078408 0.00042772 NaN 7.9454 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 435180 53915 2245 36317 37133 0.1181611242739109 RPLNVRVAL 9 Unmodified _RPLNVRVAL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15 ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3325805664062 2 519.33255 1036.65055 0.4474 0.00023235 -0.099641 -5.1747E-05 0.34776 0.0001806 519.3324799950275 42.63 0.34506 42.622 42.4 42.745 -0.0088196 32 15 3 0 0 0 0.042911 1 22779 22779 48.346 22.947 1 16363000 53916 9 36318 37134 62648 62648 0.13368837079360674 RPLNVRVAL 9 Unmodified _RPLNVRVAL_ 0 0 0 ADAM15-CHD1L|1|fusion;nc|ENSG00000143537|Q13444-7|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-3|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-4|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15 ADAM15-CHD1L|1|fusion ADAM15-CHD1L|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.833984375 2 519.33255 1036.65055 0.76805 0.00039887 -1.0209 -0.00053019 -0.25286 -0.00013132 519.3319482444921 47.04 0.41161 41.96 41.785 42.196 -5.0805 66 39 2 0 0 0 0.031062 1 29195 29195 54.774 34.32 1 45594000 53917 9 36318 37134 62649 62649 0.13368837079360674 RPLPARLFY 9 Unmodified _RPLPARLFY_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8382568359375 2 566.834926 1131.6553 1.4861 0.00084239 0.34375 0.00019485 1.8299 0.0010372 566.8351114614903 49.997 0.34354 49.948 49.763 50.107 -0.048828 26 16 2 0 0 0 0.42049 1 27008 27008 16.942 8.349 1 1842700 53918 3859 36319 37135 62650 62650 0.0947372122213892 RPLPARLFY 9 Unmodified _RPLPARLFY_ 0 0 0 ENSG00000125505|ENST00000245615|MBOAT7;nc|ENSG00000125505|Q96N66-3|MBOAT7;nc|ENSG00000125505|Q96N66-2|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 ENSG00000125505|ENST00000245615|MBOAT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5430297851562 3 378.225709 1131.6553 1.2246 0.00046317 -0.63276 -0.00023933 0.59182 0.00022384 378.2256703795825 49.964 0.40401 49.915 49.723 50.127 -0.048824 33 19 2 0 0 0 0.14017 1 27021 27021 33.445 21.95 1 1600300 53919 3859 36319 37135 62651 62651 0.0947372122213892 RPLPGPHKQL 10 Unmodified _RPLPGPHKQL_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5644836425781 3 381.564614 1141.67201 0.048114 1.8359E-05 0.10976 4.1882E-05 0.15788 6.0241E-05 381.5647235822457 17.984 0.22573 17.99 17.869 18.095 0.0060463 27 16 2 0 0 0 0.65023 1 9069 9069 8.4443 3.5473 1 1985700 53920 7633 36320 37136 62652 62652 0.10684222108079666 RPLPGPHKQL 10 Unmodified _RPLPGPHKQL_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5650634765625 3 381.564614 1141.67201 1.4709 0.00056125 -0.63844 -0.00024361 0.83247 0.00031764 381.5643182842641 19.501 0.37489 16.844 16.73 17.105 -2.6564 81 33 3 0 0 0 0.04848 2 10411 10297;10411 59.052 37.253 1 14256000 53921 7633 36320 37136 62653;62654 62654 0.10684222108079666 RPLPLDWMY 9 Unmodified _RPLPLDWMY_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX;ENST00000481541.1_1_2:85786016-85788551:-|nuORF;ENST00000496962.1_1_2:85786016-85788551:-|nuORF nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.8074951171875 2 595.804977 1189.5954 0.92348 0.00055022 1.5862 0.00094507 2.5097 0.0014953 595.8061265617689 96.717 0.27077 90.541 90.422 90.693 -6.1757 25 15 2 0 0 0 0.039985 1 64082 64082 49.933 24.534 1 10714000 53922 3128 36321 37137 62655 62655 0.008186624965901501 RPLPLTSVCY 10 Carbamidomethyl (C) _RPLPLTSVC(Carbamidomethyl (C))Y_ RPLPLTSVC(1)Y RPLPLTSVC(48)Y 0 1 0 ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2 ENST00000528599.1_1_6:111894079-111913289:-|nuORF ENST00000528599.1_1_6:111894079-111913289:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3211669921875 2 603.320991 1204.62743 0.69423 0.00041884 -2.2388 -0.0013507 -1.5446 -0.0009319 603.3210241844378 59.147 0.40932 53.073 52.868 53.277 -6.0745 34 22 2 0 0 0 0.095786 1 37903 37903 47.594 26.723 1 19896000 53923 788 36322 37138 62656 62656 65 0.03330030179745336 RPLPPDPH 8 Unmodified _RPLPPDPH_ 0 0 0 REV__ENST00000396751.6_1_11:6625218-6625296:+|nuORF REV__ENST00000396751.6_1_11:6625218-6625296:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7539367675781 2 464.753601 927.49265 NaN NaN NaN NaN NaN NaN NaN 80.018 1 80.018 79.518 80.518 0 0 0 0 0.97444 1 44436 44436 2.3027 0 1 + 53924 26514 36323 37139 62657 62657 0.026003378201380656 RPLPPFRRLI 10 Unmodified _RPLPPFRRLI_ 0 0 0 ENST00000424094.6_1_20:57394171-57417508:-|nuORF ENST00000424094.6_1_20:57394171-57417508:-|nuORF ENST00000424094.6_1_20:57394171-57417508:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.403076171875 2 632.903674 1263.7928 1.4064 0.00089009 -1.2989 -0.0008221 0.10742 6.7989E-05 633.4044911742244 106.63 0.14677 100.46 100.38 100.53 -6.1757 39 26 2 0 0 0 0.72196 1 71383 71383 0.45834 0 1 3683700 53925 13140 36324 37140 62658 62658 0.17145049821556313 RPLPPTDPPL 10 Unmodified _RPLPPTDPPL_ 0 0 0 REV__ENSG00000033030|ENST00000633063|ZCCHC8 REV__ENSG00000033030|ENST00000633063|ZCCHC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2137145996094 3 368.213358 1101.61824 1.7744 0.00065337 1.0836 0.00039898 2.858 0.0010524 368.21361996894467 21.692 0.20907 18.957 18.844 19.054 -2.7348 15 10 2 0 0 0 0.67413 1 11639 11639 5.7834 2.7882 1 1694400 + 53926 17151 36325 37141 62659 62659 0.07150004885693306 RPLPSRSD 8 Unmodified _RPLPSRSD_ 0 0 0 ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF ENST00000258439.7_1_2:96918849-96919380:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2540588378906 2 464.253966 926.493378 0.37829 0.00017562 -0.13853 -6.4313E-05 0.23976 0.00011131 464.2537974060917 84.813 0.43922 84.314 84.092 84.531 -0.49961 50 18 4 0 0 0 0.80992 1 46347 46347 0.69038 0 1 3626400 53927 11204 36326 37142 62660 62660 0.027191324691784757 RPLQEHVRF 9 Unmodified _RPLQEHVRF_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5557861328125 3 394.556118 1180.64652 0.22269 8.7863E-05 0.4011 0.00015826 0.62379 0.00024612 394.5560462137488 25.077 0.16262 25.06 24.953 25.116 -0.017006 10 6 2 0 0 0 0.044042 1 12853 12853 47.732 32.775 1 3820800 53928 9631 36327 37143 62661 62661 0.06342747585631514 RPLQEHVRF 9 Unmodified _RPLQEHVRF_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5563659667969 3 394.556118 1180.64652 0.069607 2.7464E-05 -0.35193 -0.00013886 -0.28232 -0.00011139 394.5559406372194 24.686 0.11441 24.711 24.666 24.78 0.024429 6 4 2 0 0 0 0.094905 1 12760 12760 34.222 19.265 1 1787000 53929 9631 36327 37143 62662 62662 0.06342747585631514 RPLQEHVRF 9 Unmodified _RPLQEHVRF_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5566101074219 3 394.556118 1180.64652 0.62011 0.00024467 -0.43075 -0.00016996 0.18936 7.4712E-05 394.55587741202476 27.82 0.30555 24.672 24.483 24.788 -3.1482 28 15 2 0 0 0 0.036608 1 15416 15416 51.765 27.801 1 22855000 53930 9631 36327 37143 62663 62663 0.06342747585631514 RPLQGYSVEY 10 Unmodified _RPLQGYSVEY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.3065185546875 2 606.306395 1210.59824 -0.34526 -0.00020933 -0.25539 -0.00015484 -0.60064 -0.00036417 606.3061060205478 40.402 0.44409 40.402 40.214 40.659 0 61 22 4 0 0 0 0.095786 2 21657 21657;21762 47.594 24.858 1 63309000 53931 4412 36328 37144 62664;62665 62664 0.0013620915510728082 RPLQGYSVEY 10 Unmodified _RPLQGYSVEY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.3060302734375 2 606.306395 1210.59824 0.4667 0.00028296 -0.41206 -0.00024983 0.054638 3.3128E-05 606.3061260517518 40.826 0.34098 40.523 40.337 40.678 -0.30304 46 16 4 0 0 0 0.038363 2 21546 21546;21649 63.961 27.833 1 24028000 53932 4412 36328 37144 62666;62667 62666 0.0013620915510728082 RPLQGYSVEY 10 Unmodified _RPLQGYSVEY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.306640625 2 606.306395 1210.59824 0.46388 0.00028125 0.42488 0.00025761 0.88876 0.00053886 606.3064985751403 40.541 0.2085 40.546 40.424 40.633 0.0050545 19 9 3 0 0 0 0.25982 1 21617 21617 29.841 12.728 1 2335700 53933 4412 36328 37144 62668 62668 0.0013620915510728082 RPLQGYSVEY 10 Unmodified _RPLQGYSVEY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.307373046875 2 606.306395 1210.59824 0.33453 0.00020283 0.2067 0.00012532 0.54123 0.00032815 606.3065108836616 45.938 0.54174 40.983 40.713 41.255 -4.9549 113 35 4 0 0 0 0.0072789 3 28153 28153;28287;28428 92.653 54.679 1 199320000 53934 4412 36328 37144 62669;62670;62671 62669 0.0013620915510728082 RPLQVGERSDY 11 Unmodified _RPLQVGERSDY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8960571289062 3 440.561597 1318.66296 -0.14723 -6.4866E-05 0.95474 0.00042062 0.8075 0.00035575 440.5620084305276 23.881 0.12328 23.881 23.832 23.955 0 9 5 2 0 0 0 0.6747 1 12216 12216 3.3557 1.2718 1 257620 53935 1980 36329 37145 62672 62672 0.01637783961086825 RPLRNLVSY 9 Unmodified _RPLRNLVSY_ 0 0 0 nc|ENSG00000162775|Q96T37-4|RBM15;nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15 nc|ENSG00000162775|Q96T37-4|RBM15 nc|ENSG00000162775|Q96T37-4|RBM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3278198242188 2 559.327465 1116.64038 0.48427 0.00027087 -0.58027 -0.00032456 -0.095994 -5.3692E-05 559.3274695176257 33.929 0.15566 33.958 33.859 34.014 0.028934 9 6 2 0 0 0 0.54816 1 17880 17880 3.9444 0 1 1494300 53936 6911 36330 37146 62673 62673 0.08672229354124283 RPLRSTGVAL 10 Unmodified _RPLRSTGVAL_ 0 0 0 ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.220947265625 3 357.220735 1068.64038 1.3667 0.00048821 0.1276 4.558E-05 1.4943 0.00053379 357.2206577070971 31.863 0.3753 28.168 27.983 28.358 -3.6958 30 20 3 0 0 0 0.16361 1 18105 18105 27.088 5.4982 1 12295000 53937 1943 36331 37147 62674 62674 0.10880229354120274 RPLRTLGLNKY 11 Unmodified _RPLRTLGLNKY_ 0 0 0 REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2693481445312 3 444.269978 1329.7881 0.45881 0.00020384 -1.1298 -0.00050192 -0.67095 -0.00029808 444.2694845521822 38.537 0.28934 38.554 38.394 38.683 0.01704 40 13 4 0 0 0 0.69838 1 20457 20457 4.4062 0 1 21537000 + 53938 26848 36332 37148 62675 62675 0.13640120888135243 RPLSKTVRF 9 Unmodified _RPLSKTVRF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.895263671875 3 368.560981 1102.66111 0.11487 4.2335E-05 -0.52577 -0.00019378 -0.41091 -0.00015144 368.56067717432234 22.966 0.21111 22.983 22.861 23.072 0.01749 16 11 2 0 0 0 0.0081 1 11808 11808 78.61 42.215 1 4700500 53939 5423 36333 37149 62676 62676 0.11388819733770106 RPLSKTVRF 9 Unmodified _RPLSKTVRF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5610656738281 3 368.560981 1102.66111 0.65102 0.00023994 -0.41809 -0.00015409 0.23293 8.585E-05 368.5607482588047 26.01 0.56874 23.059 22.772 23.34 -2.9511 116 35 4 0 0 0 0.0039711 2 14265 14157;14265 101.54 55.521 1 228790000 53940 5423 36333 37149 62677;62678 62678 0.11388819733770106 RPLSKTVRF 9 Unmodified _RPLSKTVRF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.337646484375 2 552.337833 1102.66111 0.04544 2.5098E-05 -1.0009 -0.00055284 -0.95546 -0.00052774 552.3372040705367 25.971 0.30393 23.02 22.88 23.184 -2.9511 30 19 2 0 0 0 0.21589 1 14234 14234 21.59 8.5477 1 10825000 53941 5423 36333 37149 62679 62679 0.11388819733770106 RPLSQAVSF 9 Unmodified _RPLSQAVSF_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7797546386719 2 502.779816 1003.54508 NaN NaN NaN NaN NaN NaN NaN 43.778 1 43.762 43.262 44.262 -0.015667 0 0 0 0.068038 1 23468 23468 51.63 13.479 1 53942 1195 36334 37150 62680 62680 0.04344876163088429 RPLVSASAL 9 Unmodified _RPLVSASAL_ 0 0 0 ENSG00000124217|ENST00000244051|MOCS3 ENSG00000124217|ENST00000244051|MOCS3 ENSG00000124217|ENST00000244051|MOCS3 MSMS AL20221201_MKP_PDAC_01 4 457.2767944335938 2 457.276909 912.539266 NaN NaN NaN NaN NaN NaN NaN 47.063 1 41.983 41.483 42.483 -5.0805 0 0 0 0.12343 1 29170 29170 39.95 10.868 1 53943 3764 36335 37151 62681 62681 0.07949777651424483 RPLVVKTSL 9 Unmodified _RPLVVKTSL_ 0 0 0 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8297424316406 2 506.829309 1011.64407 0.25116 0.0001273 0.29608 0.00015006 0.54724 0.00027736 506.82933682795255 33.734 0.25608 33.763 33.625 33.881 0.028934 23 10 3 0 0 0 0.017075 1 17748 17748 66.457 26.507 1 3371600 53944 6188 36336 37152 62682 62682 0.1387089912798274 RPLYKNIVL 9 Unmodified _RPLYKNIVL_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.35009765625 2 558.350409 1114.68626 0.48096 0.00026854 0.24096 0.00013454 0.72192 0.00040308 558.3505122644332 45.78 0.41901 45.752 45.529 45.948 -0.028011 60 20 4 0 0 0 0.019303 2 24535 24535;24648 64.236 24.279 1 95489000 53945 3085 36337 37153 62683;62684 62683 0.1335087453635424 RPLYKNIVL 9 Unmodified _RPLYKNIVL_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.569580078125 3 372.569365 1114.68626 0.12829 4.7797E-05 0.48911 0.00018223 0.6174 0.00023002 372.5695516375873 45.772 0.34026 45.744 45.565 45.905 -0.028015 49 16 4 0 0 0 0.070838 1 24587 24587 29.841 16.968 1 40254000 53946 3085 36337 37153 62685 62685 0.1335087453635424 RPLYKNIVL 9 Unmodified _RPLYKNIVL_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3506469726562 2 558.350409 1114.68626 1.2187 0.00068047 -0.60968 -0.00034042 0.60903 0.00034005 558.3499858110275 50.518 0.46822 44.979 44.775 45.244 -5.5391 86 29 4 0 0 0 0.019303 2 31674 31674;31818 64.236 30.588 1 191930000 53947 3085 36337 37153 62686;62687 62686 0.1335087453635424 RPLYKNIVL 9 Unmodified _RPLYKNIVL_ 0 0 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5701904296875 3 372.569365 1114.68626 1.633 0.00060842 -0.41112 -0.00015317 1.2219 0.00045525 372.56918897090253 50.521 0.38782 44.982 44.775 45.163 -5.5391 58 24 3 0 0 0 0.070838 2 31822 31675;31822 29.841 10.917 1 64712000 53948 3085 36337 37153 62688;62689 62689 0.1335087453635424 RPLYLFFF 8 Unmodified _RPLYLFFF_ 0 0 0 ENST00000508170.5_1_4:55131036-55131279:+|nuORF ENST00000508170.5_1_4:55131036-55131279:+|nuORF ENST00000508170.5_1_4:55131036-55131279:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.2011413574219 3 368.207656 1101.60114 NaN NaN NaN NaN NaN NaN NaN 20.795 1 18.102 17.602 18.602 -2.693 0 0 0 0.96881 1 11094 11094 6.7232 0 1 53949 14554 36338 37154 62690 62690 0.05440129070552757 RPLYPQMSL 9 Unmodified _RPLYPQMSL_ 0 0 0 ENST00000590135.5_1_19:36234478-36235075:-|nuORF;ENST00000586476.5_1_19:36234478-36235258:-|nuORF ENST00000590135.5_1_19:36234478-36235075:-|nuORF ENST00000590135.5_1_19:36234478-36235075:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7971801757812 2 552.797152 1103.57975 NaN NaN NaN NaN NaN NaN NaN 19.061 1 19.069 18.569 19.569 0.0078487 0 0 0 0.84737 1 9684 9684 1.8442 0 1 53950 15620 36339 37155 62691 62691 0.03210375979551827 RPLYTHEY 8 Unmodified _RPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7706909179688 2 539.769448 1077.52434 NaN NaN NaN NaN NaN NaN NaN 21.402 1 21.402 20.902 21.902 0 0 0 0 0.94494 1 10827 10827 11.64 6.4096 1 53951 399 36340 37156 62692 62692 -0.011317142165808036 RPLYTHEY 8 Unmodified _RPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7704467773438 2 539.769448 1077.52434 0.079471 4.2896E-05 0.20607 0.00011123 0.28554 0.00015412 539.7696959543953 23.919 0.26592 21.092 20.948 21.213 -2.8273 25 15 2 0 0 0 0.34916 1 12951 12951 49.933 29.479 1 3467600 53952 399 36340 37156 62693 62693 -0.011317142165808036 RPLYTHEY 8 Unmodified _RPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.1827392578125 3 360.182058 1077.52434 0.88912 0.00032025 0.45549 0.00016406 1.3446 0.0004843 360.1820803602361 23.933 0.37566 21.106 20.948 21.323 -2.8273 29 21 2 0 0 0 0.55032 1 12999 12999 24.021 14.637 1 3186700 53953 399 36340 37156 62694 62694 -0.011317142165808036 RPLYTHEY 8 Unmodified _RPLYTHEY_ 0 0 0 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 ENSG00000008952|ENST00000337002|SEC62 MSMS AL20221201_MKP_PDAC_01 4 539.7692260742188 2 539.769448 1077.52434 NaN NaN NaN NaN NaN NaN NaN 24.062 1 21.235 20.735 21.735 -2.8273 0 0 0 0.96606 1 13070 13070 7.2892 2.0586 1 53954 399 36340 37156 62695 62695 -0.011317142165808036 RPMDQDFIK 9 Unmodified _RPMDQDFIK_ 0 0 0 REV__ENST00000308488.10_1_11:77458159-77475664:-|nuORF REV__ENST00000308488.10_1_11:77458159-77475664:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.526123046875 3 383.862219 1148.56483 NaN NaN NaN NaN NaN NaN NaN 26.373 1 26.4 25.9 26.9 0.026951 0 0 0 0.84737 1 13678 13678 0.96228 0.26461 1 + 53955 25398 36341 37157 62696 62696 -0.003511158884748511 RPMGAGEAL 9 Oxidation (M) _RPM(Oxidation (M))GAGEAL_ RPM(1)GAGEAL RPM(42)GAGEAL 0 0 1 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2290649414062 2 459.229102 916.443651 0.89194 0.0004096 0.91869 0.00042189 1.8106 0.0008315 459.2294905254746 22.08 0.29924 19.345 19.19 19.489 -2.7348 27 16 2 0 0 0 0.06294 1 11900 11900 41.84 7.6523 1 3437100 53956 4131 36342 37158 62697 62697 736 -0.0179131853110448 RPMKTSVL 8 Unmodified _RPMKTSVL_ 0 0 0 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 nc|ENSG00000189266|Q9NPJ4-2|PNRC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2744140625 2 466.273312 930.532072 0.03947 1.8404E-05 -0.20291 -9.4613E-05 -0.16344 -7.6209E-05 466.27321703448615 24.96 0.39249 22.077 21.888 22.28 -2.8831 62 36 2 0 0 0 0.27285 2 13561 13561;13671 58.679 26.373 1 29772000 53957 16471 36343 37159 62698;62699 62698 0.06402721779340936 RPMLSQPAY 9 Oxidation (M) _RPM(Oxidation (M))LSQPAY_ RPM(1)LSQPAY RPM(42)LSQPAY 0 0 1 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-6|OCLN;nc|ENSG00000197822|Q16625-7|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7725219726562 2 539.771134 1077.52771 -0.32911 -0.00017764 -0.66293 -0.00035783 -0.99203 -0.00053547 539.7716976225543 29.717 0.18036 29.717 29.597 29.777 0 23 9 3 0 0 0 0.06294 1 15394 15394 41.84 25.992 1 3818800 53958 10007 36344 37160 62700 62700 1625 -0.007947874342335126 RPMLSQPAY 9 Oxidation (M) _RPM(Oxidation (M))LSQPAY_ RPM(1)LSQPAY RPM(59)LSQPAY 0 0 1 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-6|OCLN;nc|ENSG00000197822|Q16625-7|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7724609375 2 539.771134 1077.52771 1.2007 0.00064812 1.1411 0.00061591 2.3418 0.001264 539.7719377424713 33.748 0.35732 29.763 29.572 29.929 -3.9853 34 19 2 0 0 0 0.024882 1 19339 19339 58.679 36.932 1 8818400 53959 10007 36344 37160 62701 62701 1625 -0.007947874342335126 RPMLSQPAY 9 Oxidation (M) _RPM(Oxidation (M))LSQPAY_ 0 0 1 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-6|OCLN;nc|ENSG00000197822|Q16625-7|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.771134 1077.52771 0.50168 0.00027079 1.2086 0.00065236 1.7103 0.00092315 539.7719224715768 29.69 0.098471 29.61 29.525 29.624 -0.080431 -0.08685 0.00037305 NaN 58.679 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9802400 53960 10007 36344 37160 1625 -0.007947874342335126 RPMLSQPAY 9 Unmodified _RPMLSQPAY_ 0 0 0 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN;nc|ENSG00000197822|Q16625-6|OCLN;nc|ENSG00000197822|Q16625-7|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MSMS AL20221201_MKP_PDAC_01 4 531.77392578125 2 531.773677 1061.5328 NaN NaN NaN NaN NaN NaN NaN 40.229 1 35.7 35.2 36.2 -4.5294 0 0 0 0.098163 1 24000 24000 43.858 18.459 1 53961 10007 36344 37161 62702 62702 0.004495164283980557 RPMPLLAYY 9 Unmodified _RPMPLLAYY_ 0 0 0 ENST00000588623.5_2_16:5134914-5135157:+|nuORF ENST00000588623.5_2_16:5134914-5135157:+|nuORF ENST00000588623.5_2_16:5134914-5135157:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2052917480469 3 375.203805 1122.58959 NaN NaN NaN NaN NaN NaN NaN 21.746 1 21.759 21.259 22.259 0.013796 0 0 0 0.82739 1 11152 11152 4.897 1.9018 1 53962 15650 36345 37162 62703 62703 0.03319563984928209 RPMPRQRL 8 Unmodified _RPMPRQRL_ 0 0 0 REV__ENSG00000119772|ENST00000321117|DNMT3A REV__ENSG00000119772|ENST00000321117|DNMT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2046203613281 3 351.874794 1052.60255 1.1262 0.00039628 4.2957 0.0015115 5.4219 0.0019078 351.87699792774674 27.864 0.55017 24.716 24.568 25.119 -3.1482 48 29 2 0 0 0 0.78849 1 15642 15642 6.7232 0 1 27624000 + 53963 19211 36346 37163 62704 62704 0.07835439887662687 RPMSESPHM 9 Unmodified _RPMSESPHM_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2403564453125 2 536.239144 1070.46373 1.0325 0.00055366 0.17239 9.2443E-05 1.2049 0.0006461 536.2396799312769 20.012 0.23203 17.356 17.239 17.471 -2.6564 26 12 3 0 0 0 0.07087 1 10658 10658 39.95 18.203 1 1922200 53964 9393 36347 37164 62705 62705 -0.06867890862827153 RPMSESPHM 9 Unmodified _RPMSESPHM_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.5392456054688 3 357.828521 1070.46373 1.801 0.00064444 0.90865 0.00032514 2.7096 0.00096958 357.8289108120003 20.001 0.23203 17.344 17.239 17.471 -2.6564 33 12 3 0 0 0 0.21144 1 10632 10632 7.1017 4.3665 1 2962500 53965 9393 36347 37164 62706 62706 -0.06867890862827153 RPNALAVQQL 10 Unmodified _RPNALAVQQL_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.2589721679688 2 555.324922 1108.63529 1.032 0.00057312 -0.97197 -0.00053976 0.06007 3.3359E-05 555.3242388001157 48.015 0.31202 42.781 42.496 42.808 -5.2339 22 18 2 0 0 0 0.23693 1 29858 29858 6.2058 0 1 8683900 53966 4627 36348 37165 62707 62707 0.08531925491524817 RPNAYLEEIE 10 Unmodified _RPNAYLEEIE_ 0 0 0 REV__ENSG00000257743|ENST00000477922|MGAM2 REV__ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8760986328125 3 411.875182 1232.60372 -0.14118 -5.8147E-05 2.0026 0.00082484 1.8615 0.00076669 411.87630079783656 16.362 0.098738 16.367 16.323 16.422 0.0050564 8 5 2 0 0 0 0.71276 1 8212 8212 0.62683 0 1 214160 + 53967 24566 36349 37166 62708 62708 -0.0032811205312555103 RPNDIYVNM 9 Oxidation (M) _RPNDIYVNM(Oxidation (M))_ RPNDIYVNM(1) RPNDIYVNM(52) 0 0 1 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2708129882812 2 569.271498 1136.52844 -0.23649 -0.00013463 -0.83228 -0.00047379 -1.0688 -0.00060842 569.2711708517608 26.201 0.37773 26.201 25.965 26.343 0 51 20 3 0 0 0 0.036857 2 13472 13369;13472 51.63 36.792 1 10730000 53968 8201 36350 37167 62709;62710 62710 1391 -0.034359927851937755 RPNDIYVNM 9 Oxidation (M) _RPNDIYVNM(Oxidation (M))_ RPNDIYVNM(1) RPNDIYVNM(150) 0 0 1 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MSMS AL20221201_MKP_PDAC_01 4 569.2723999023438 2 569.271498 1136.52844 NaN NaN NaN NaN NaN NaN NaN 29.594 1 26.292 25.792 26.792 -3.3016 0 0 0 9.4373E-11 1 16652 16652 152.41 80.49 1 53969 8201 36350 37167 62711 62711 1391 -0.034359927851937755 RPNDIYVNM 9 Unmodified _RPNDIYVNM_ 0 0 0 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 ENSG00000172336|ENST00000303151|POP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2725219726562 2 561.274041 1120.53353 0.60934 0.00034201 -1.297 -0.00072798 -0.68767 -0.00038597 561.2730673384192 46.629 0.31509 41.549 41.372 41.688 -5.0805 89 62 2 0 0 0 0.018301 2 28785 28785;28917 65.235 39.836 1 70791000 53970 8201 36350 37168 62712;62713 62712 -0.02191688922562207 RPNDSRMLVA 10 Unmodified _RPNDSRMLVA_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MSMS AL20221201_MKP_PDAC_01 4 579.806640625 2 579.806039 1157.59753 NaN NaN NaN NaN NaN NaN NaN 28.728 1 25.58 25.08 26.08 -3.1482 0 0 0 0.82843 1 16052 16052 12.175 2.0242 1 53971 1638 36351 37169 62714 62714 0.025030912343936507 RPNDSRMLVA 10 Unmodified _RPNDSRMLVA_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.7331237792969 3 386.873118 1157.59753 1.1483 0.00044426 -0.95688 -0.00037019 0.19144 7.4064E-05 386.8726980848494 28.664 0.27527 25.516 25.358 25.633 -3.1482 20 13 2 0 0 0 0.23366 1 15940 15940 8.7518 3.4549 1 7778200 53972 1638 36351 37169 62715 62715 0.025030912343936507 RPNDVQLFY 9 Unmodified _RPNDVQLFY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2969970703125 2 576.29583 1150.57711 0.59576 0.00034333 0.41648 0.00024001 1.0122 0.00058335 576.2951002623313 53.649 0.23431 53.198 53.065 53.3 -0.45173 21 11 2 0 0 0 0.2546 1 29029 29029 19.362 1.227 1 2556600 53973 1983 36352 37170 62716 62716 0.007842438462375867 RPNERYRLL 9 Unmodified _RPNERYRLL_ 0 0 0 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-4|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5688781738281 3 406.235156 1215.68364 0.01095 4.4482E-06 -0.32925 -0.00013375 -0.3183 -0.00012931 406.2351436229704 26.617 0.26229 26.644 26.517 26.78 0.026951 23 10 3 0 0 0 0.082934 1 13795 13795 37.075 9.8514 1 11057000 53974 6645 36353 37171 62717 62717 0.0844241913141559 RPNGDIVGY 9 Unmodified _RPNGDIVGY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7542114257812 2 495.753798 989.493044 0.079747 3.9535E-05 1.7967 0.00089072 1.8765 0.00093026 495.75376729397806 31.588 0.38028 31.588 31.398 31.778 0 73 18 5 0 0 0 0.024882 2 16389 16366;16389 58.679 11.758 1 43108000 53975 4412 36354 37172 62718;62719 62719 -0.0021228725065611798 RPNGDIVGY 9 Unmodified _RPNGDIVGY_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2562255859375 2 495.753798 989.493044 1.1585 0.00057435 1.3428 0.0006657 2.5014 0.0012401 495.7537794352469 35.745 0.53529 31.553 31.252 31.787 -4.1928 120 33 5 0 0 0 0.0082661 3 20639 20639;20771;20911 92.491 56.364 1 143000000 53976 4412 36354 37172 62720;62721;62722 62720 -0.0021228725065611798 RPNGRVAL 8 Unmodified _RPNGRVAL_ 0 0 0 ENSG00000247077|ENST00000498926|PGAM5 ENSG00000247077|ENST00000498926|PGAM5 ENSG00000247077|ENST00000498926|PGAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7669677734375 2 441.767043 881.519533 1.3017 0.00057505 -0.1988 -8.7822E-05 1.1029 0.00048722 441.76700781471965 20.797 0.30318 18.104 17.941 18.244 -2.693 32 19 2 0 0 0 0.6895 2 11048 11048;11154 18.135 1.1927 1 5454000 53977 10736 36355 37173 62723;62724 62723 0.07403446431317207 RPNGTKVAVLL 11 Unmodified _RPNGTKVAVLL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;ENST00000474535.2_1_2:38545640-38570535:-|nuORF nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9114685058594 3 389.91179 1166.71354 -0.13876 -5.4104E-05 -0.5287 -0.00020615 -0.66746 -0.00026025 389.9115642165679 41.379 0.29071 41.377 41.2 41.491 -0.0017929 17 13 2 0 0 0 0.60536 1 22118 22118 11.065 6.1683 1 2606600 53978 3470 36356 37174 62725 62725 0.13685358076759258 RPNGVITGL 9 Unmodified _RPNGVITGL_ 0 0 0 nc|ENSG00000122068|Q96QD9-4|FYTTD1;nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1 nc|ENSG00000122068|Q96QD9-4|FYTTD1 nc|ENSG00000122068|Q96QD9-4|FYTTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7745361328125 2 463.774534 925.534515 -0.31209 -0.00014474 0.14008 6.4968E-05 -0.17201 -7.9772E-05 463.7747686663685 42.058 0.24094 41.751 41.597 41.838 -0.30682 20 11 2 0 0 0 0.011968 1 22290 22290 74.929 16.25 1 15760000 53979 3621 36357 37175 62726 62726 0.06876893508649573 RPNGVITGL 9 Unmodified _RPNGVITGL_ 0 0 0 nc|ENSG00000122068|Q96QD9-4|FYTTD1;nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1 nc|ENSG00000122068|Q96QD9-4|FYTTD1 nc|ENSG00000122068|Q96QD9-4|FYTTD1 MSMS AL20221201_MKP_PDAC_01 4 463.7742919921875 2 463.774534 925.534515 NaN NaN NaN NaN NaN NaN NaN 46.513 1 41.433 40.933 41.933 -5.0805 0 0 0 0.074615 1 28750 28750 49.933 11.782 1 53980 3621 36357 37175 62727 62727 0.06876893508649573 RPNNARPS 8 Unmodified _RPNNARPS_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-5|UNKL REV__nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2439575195312 2 456.243932 910.473312 0.39967 0.00018235 -0.90847 -0.00041448 -0.5088 -0.00023214 456.2435209230328 20.827 0.20149 20.838 20.741 20.943 0.010553 16 10 2 0 0 0 0.66338 1 10636 10636 20.454 4.6064 1 3453500 + 53981 29494 36358 37176 62728 62728 0.014493815292212275 RPNNARPS 8 Unmodified _RPNNARPS_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-5|UNKL REV__nc|ENSG00000059145|Q9H9P5-5|UNKL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 456.243932 910.473312 0.39967 0.00018235 -0.90847 -0.00041448 -0.5088 -0.00023214 456.2435209230328 20.827 0.20149 20.838 20.741 20.943 0.010553 0 0 NaN 20.454 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3453500 + 53982 29494 36358 37176 0.014493815292212275 RPNNAYTAM 9 Unmodified _RPNNAYTAM_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MSMS AL20221201_MKP_PDAC_01 4 519.733642578125 2 519.245283 1036.47601 NaN NaN NaN NaN NaN NaN NaN 25.858 1 22.907 22.407 23.407 -2.9511 0 0 0 0.32177 1 14189 14189 24.021 2.4836 1 53983 10096 36359 37177 62729 62729 -0.04076531128134775 RPNQHNTVKL 10 Unmodified _RPNQHNTVKL_ 0 0 0 ENSG00000198056|ENST00000338193|PRIM1;ENST00000548173.5_1_12:57140708-57146082:-|nuORF ENSG00000198056|ENST00000338193|PRIM1 ENSG00000198056|ENST00000338193|PRIM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.049072265625 3 402.894911 1205.6629 0.27593 0.00011117 2.1769 0.00087707 2.4528 0.00098824 402.895355081506 16.327 0.11941 13.77 13.71 13.83 -2.557 18 13 2 0 0 0 0.23966 1 8420 8420 3.3196 0.47636 1 2273300 53984 10044 36360 37178 62730 62730 0.06829828751756395 RPNQSLRSI 9 Unmodified _RPNQSLRSI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8751831054688 3 357.540357 1069.59924 0.9686 0.00034631 0.073909 2.6426E-05 1.0425 0.00037274 357.5404404125115 22.815 0.27591 20.037 19.872 20.148 -2.7784 34 21 2 0 0 0 0.037118 1 12252 12252 51.488 20.785 1 4884100 53985 16188 36361 37179 62731 62731 0.06722468314660546 RPNQSLRSI 9 Unmodified _RPNQSLRSI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8075561523438 2 535.806897 1069.59924 0.20092 0.00010765 -0.22836 -0.00012236 -0.027448 -1.4707E-05 535.8067113567132 22.794 0.26718 20.015 19.899 20.166 -2.7784 33 20 2 0 0 0 0.052231 1 12254 12254 40.239 20.982 1 4992300 53986 16188 36361 37179 62732 62732 0.06722468314660546 RPNQSLRSI 9 Unmodified _RPNQSLRSI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 535.806897 1069.59924 0.1128 6.0439E-05 0.58362 0.00031271 0.69642 0.00037314 535.8070214011278 19.695 0.10619 19.702 19.65 19.756 0.0078487 -0.15651 0.00061597 NaN 40.239 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 275640 53987 16188 36361 37179 0.06722468314660546 RPNQSLRSITL 11 Unmodified _RPNQSLRSITL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.9175720214844 3 428.917604 1283.73098 0.31438 0.00013484 0.046906 2.0119E-05 0.36128 0.00015496 428.91765718078045 39.056 0.33866 39.067 38.92 39.259 0.011456 54 15 5 0 0 0 0.028917 1 20764 20764 41.259 27.741 1 24856000 53988 16188 36362 37180 62733 62733 0.1004665361174375 RPNQSLRSITL 11 Unmodified _RPNQSLRSITL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3742065429688 2 642.872768 1283.73098 0.34039 0.00021883 -0.27781 -0.0001786 0.062577 4.0229E-05 642.872880222354 39.063 0.23418 39.074 38.962 39.196 0.011452 24 10 3 0 0 0 0.6747 1 20777 20777 6.6304 0.89852 1 4655100 53989 16188 36362 37180 62734 62734 0.1004665361174375 RPNQSLRSITL 11 Unmodified _RPNQSLRSITL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2522277832031 3 428.917604 1283.73098 0.84798 0.00036371 -0.035853 -1.5378E-05 0.81212 0.00034833 428.9175897969345 43.058 0.39326 38.293 38.083 38.477 -4.7648 70 25 4 0 0 0 0.0030527 2 26148 26010;26148 59.935 42.072 1 64662000 53990 16188 36362 37180 62735;62736 62736 0.1004665361174375 RPNQSLRSITL 11 Unmodified _RPNQSLRSITL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.873779296875 2 642.872768 1283.73098 0.54216 0.00034854 -0.39569 -0.00025438 0.14647 9.4165E-05 642.8725511327525 43.061 0.29413 38.296 38.111 38.405 -4.7648 41 18 3 0 0 0 0.020907 2 26165 26029;26165 57.204 39.761 1 22240000 53991 16188 36362 37180 62737;62738 62738 0.1004665361174375 RPNTGVLLVV 10 Unmodified _RPNTGVLLVV_ 0 0 0 REV__nc|ENSG00000023228|P28331-3|NDUFS1 REV__nc|ENSG00000023228|P28331-3|NDUFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.33154296875 2 534.332216 1066.64988 0.15134 8.0866E-05 0.0233 1.245E-05 0.17464 9.3315E-05 534.3319687371434 55.239 0.31836 55.17 54.98 55.298 -0.068737 34 15 3 0 0 0 0.6067 1 30062 30062 10.8 0 1 6107600 + 53992 17117 36363 37181 62739 62739 0.11921997639660731 RPNWKLVF 8 Unmodified _RPNWKLVF_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.307373046875 2 530.308544 1058.60253 0.13691 7.2606E-05 -3.5024 -0.0018573 -3.3655 -0.0017847 530.3065840356534 28.606 0.13687 28.635 28.544 28.681 0.029564 8 4 2 0 0 0 0.67481 1 14894 14894 19.439 4.8573 1 1913400 + 53993 20274 36364 37182 62740 62740 0.0755776315932053 RPNWRRRWWRF 11 Unmodified _RPNWRRRWWRF_ 0 0 0 REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4644775390625 2 858.466358 1714.91816 NaN NaN NaN NaN NaN NaN NaN 92.992 1 92.992 92.492 93.492 0 0 0 0 0.9435 1 51418 51418 0 0 1 + 53994 26907 36365 37183 62741 62741 0.08930154730478534 RPPAHSGTWPG 11 Unmodified _RPPAHSGTWPG_ 0 0 0 nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A nc|ENSG00000132635|Q9H1Q7-2|PCED1A nc|ENSG00000132635|Q9H1Q7-2|PCED1A MSMS AL20221201_MKP_PDAC_01 4 388.1973571777344 3 388.19659 1161.56794 NaN NaN NaN NaN NaN NaN NaN 28.632 1 25.484 24.984 25.984 -3.1482 0 0 0 0.89305 1 15989 15989 3.8459 0 1 53995 4429 36366 37184 62742 62742 -0.0063810471945089375 RPPDEQRLY 9 Unmodified _RPPDEQRLY_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2060852050781 3 391.871883 1172.59382 -0.34979 -0.00013707 0.61254 0.00024004 0.26275 0.00010296 391.8722527271759 23.345 0.36572 23.345 23.144 23.51 0 28 17 2 0 0 0 0.56345 1 11954 11954 2.086 1.1605 1 561660 53996 2133 36367 37185 62743 62743 0.014427447322077569 RPPELPQCI 9 Unmodified _RPPELPQCI_ 0 0 0 REV__ENST00000476084.1_1_21:45143670-45143748:+|nuORF REV__ENST00000476084.1_1_21:45143670-45143748:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5237731933594 3 351.523427 1051.54845 NaN NaN NaN NaN NaN NaN NaN 0.50486 1 0.4828 -0.017202 0.9828 -0.022065 0 0 0 0.85798 1 268 268 0.23584 0 1 + 53997 27586 36368 37186 62744 62744 0.024738029454283605 RPPGHPAP 8 Unmodified _RPPGHPAP_ 0 0 0 REV__ENST00000381312.5_1_10:1230972-1279682:-|nuORF REV__ENST00000381312.5_1_10:1230972-1279682:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.4465942382812 1 828.447497 827.44022 -0.0060071 -4.9766E-06 -0.58471 -0.0004844 -0.59072 -0.00048938 828.4467400216478 79.641 0.25251 79.641 79.523 79.775 0 14 10 2 0 0 0 0.81107 1 44240 44240 0 0 1 274750 + 53998 26332 36369 37187 62745 62745 0.0195979947716296 RPPGPGGL 8 Unmodified _RPPGPGGL_ 0 0 0 REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF REV__ENST00000379339.5_2_1:1017828-1018098:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.8478698730469 2 375.716488 749.418422 0.34716 0.00013043 -3.8223 -0.0014361 -3.4751 -0.0013057 375.7166157981964 25.596 0.15684 22.713 22.625 22.782 -2.8831 13 8 2 0 0 0 8.7369 1 13971 13971 0.79363 0 1 2370100 + 53999 26280 36370 37188 62746 62746 0.0336899472862342 RPPHVKRHR 9 Unmodified _RPPHVKRHR_ 0 0 0 REV__ENST00000477132.1_1_2:37544174-37551396:-|nuORF REV__ENST00000477132.1_1_2:37544174-37551396:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.9076538085938 3 394.907485 1181.70063 -0.53397 -0.00021087 -0.42105 -0.00016627 -0.95502 -0.00037714 394.9073628494193 15.415 0.096265 15.401 15.355 15.451 -0.014067 72 31 3 0 0 0 0.61381 1 7547 7547 0.23584 0 1 1603200 + 54000 27606 36371 37189 62747 62747 0.11704384527888578 RPPIASAEL 9 Unmodified _RPPIASAEL_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2744445800781 2 477.274367 952.53418 0.45696 0.0002181 -0.06824 -3.2569E-05 0.38872 0.00018553 477.2743858146235 42.294 0.40209 42.294 42.105 42.507 0 48 19 3 0 0 0 0.028475 1 22936 22936 56.177 0 1 21366000 + 54001 21759 36372 37190 62748 62748 0.056014737887949195 RPPIPDEL 8 Unmodified _RPPIPDEL_ 0 0 0 ENST00000462379.1_1_1:2435075-2436649:+|nuORF;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2 ENST00000462379.1_1_1:2435075-2436649:+|nuORF ENST00000462379.1_1_1:2435075-2436649:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 468.7599792480469 2 468.761092 935.507631 NaN NaN NaN NaN NaN NaN NaN 15.284 1 12.756 12.256 13.256 -2.5273 0 0 0 0.97444 1 7827 7827 5.2307 0 1 54002 6016 36373 37191 62749 62749 0.03729784897461741 RPPLEEKKAL 10 Unmodified _RPPLEEKKAL_ 0 0 0 ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2394104003906 3 394.239796 1179.69756 -0.54327 -0.00021418 0.063094 2.4874E-05 -0.48017 -0.0001893 394.23972287345 18.886 0.18134 18.886 18.77 18.951 0 20 14 2 0 0 0 0.42967 1 9403 9403 19.987 11.543 1 1072100 54003 7878 36374 37192 62750 62750 0.11489651839838189 RPPLEEKKAL 10 Unmodified _RPPLEEKKAL_ 0 0 0 ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.240234375 3 394.239796 1179.69756 1.3738 0.00054159 -0.15086 -5.9475E-05 1.2229 0.00048212 394.23971803525893 20.638 0.382 17.945 17.742 18.124 -2.693 43 23 2 0 0 0 0.10467 2 10974 10974;11082 45.603 31.432 1 5620000 54004 7878 36374 37192 62751;62752 62751 0.11489651839838189 RPPLKERR 8 Unmodified _RPPLKERR_ 0 0 0 ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10 ENSG00000065328|ENST00000378714|MCM10 ENSG00000065328|ENST00000378714|MCM10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2193298339844 3 351.220958 1050.64105 NaN NaN NaN NaN NaN NaN NaN 0.20323 1 0.12931 -0.37069 0.62931 -0.07392 0 0 0 0.97444 1 105 105 1.3295 0.46516 1 54005 899 36375 37193 62753 62753 0.11775068793826904 RPPLRPPP 8 Unmodified _RPPLRPPP_ 0 0 0 REV__ENSG00000275342|ENST00000615670|PRAG1 REV__ENSG00000275342|ENST00000615670|PRAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2634582519531 2 465.287611 928.56067 0.83124 0.00038677 -1.5395 -0.00071631 -0.70827 -0.00032955 465.28679303001365 74.276 0.23894 74.276 74.15 74.388 0 17 10 2 0 0 0 0.80992 1 41280 41280 0.69038 0 1 414360 + 54006 24650 36376 37194 62754 62754 0.09353207470792313 RPPLRSVVQ 9 Unmodified _RPPLRSVVQ_ 0 0 0 ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF ENST00000570913.5_1_17:79009009-79050117:+|nuORF ENST00000570913.5_1_17:79009009-79050117:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2184753417969 3 351.217214 1050.62981 NaN NaN NaN NaN NaN NaN NaN 1.2783 1 1.2051 0.70506 1.7051 -0.07329 0 0 0 0.84892 1 640 640 0.86438 0 1 54007 15482 36377 37195 62755 62755 0.10652246699692114 RPPLVLLGP 9 Unmodified _RPPLVLLGP_ 0 0 0 REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.3128967285156 2 481.313295 960.612037 NaN NaN NaN NaN NaN NaN NaN 103.53 1 103.48 102.98 103.98 -0.047928 0 0 0 0.85798 1 57496 57496 0.52476 0 1 + 54008 28261 36378 37196 62756 62756 0.13015531444852968 RPPPIGAEV 9 Unmodified _RPPPIGAEV_ 0 0 0 nc|ENSG00000143384|Q07820-2|MCL1;ENSG00000143384|ENST00000369026|MCL1 nc|ENSG00000143384|Q07820-2|MCL1 nc|ENSG00000143384|Q07820-2|MCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2681884765625 2 468.269084 934.523616 -0.25268 -0.00011832 -0.37803 -0.00017702 -0.63071 -0.00029534 468.26880646206405 34.376 0.59361 34.376 34.14 34.733 0 43 30 2 0 0 0 0.28023 2 18009 18009;18124 18.146 7.3224 1 2338500 54009 5505 36379 37197 62757;62758 62757 0.05373491134378128 RPPPPGMRGLL 11 Unmodified _RPPPPGMRGLL_ 0 0 0 ENSG00000125835|ENST00000381342|SNRPB ENSG00000125835|ENST00000381342|SNRPB ENSG00000125835|ENST00000381342|SNRPB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 397.2005615234375 3 397.565737 1189.67538 0.91461 0.00036362 0.59507 0.00023658 1.5097 0.0006002 397.5661317646464 45.762 0.40522 40.807 40.613 41.018 -4.9549 32 26 2 0 0 0 0.30482 1 28111 28111 4.1166 0 1 6267600 54010 3892 36380 37198 62759 62759 0.08813148890453704 RPPQPPPPQ 9 Unmodified _RPPQPPPPQ_ 0 0 0 REV__nc|ENSG00000168066|Q15637-5|SF1 REV__nc|ENSG00000168066|Q15637-5|SF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1013.554992675781 1 1013.55269 1012.54541 0.83659 0.00084793 2.0564 0.0020843 2.893 0.0029322 1013.5546661588555 49.373 0.099945 43.977 43.936 44.036 -5.3961 6 5 2 0 0 0 0.41742 1 30851 30851 11.64 1.5664 1 31434000 + 54011 29767 36381 37199 62760 62760 0.03964295882940405 RPPQRQVVL 9 Unmodified _RPPQRQVVL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8601684570312 3 364.89273 1091.65636 1.2029 0.00043893 -1.0755 -0.00039244 0.12741 4.6491E-05 364.8923503089657 26.774 0.30329 23.737 23.57 23.873 -3.0365 24 15 2 0 0 0 0.20207 1 14763 14763 11.495 0.6952 1 8741300 54012 6396 36382 37200 62761 62761 0.11419935591038666 RPPQRQVVL 9 Unmodified _RPPQRQVVL_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7886962890625 2 546.835457 1091.65636 0.46913 0.00025654 -0.19225 -0.00010513 0.27689 0.00015141 547.3367230324881 26.738 0.26489 23.702 23.589 23.854 -3.0365 21 13 2 0 0 0 0.17331 1 14804 14804 12.532 1.7076 1 5079100 54013 6396 36382 37200 62762 62762 0.11419935591038666 RPPQTPLRL 9 Unmodified _RPPQTPLRL_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MSMS AL20221201_MKP_PDAC_01 4 359.8897399902344 3 359.889097 1076.64546 NaN NaN NaN NaN NaN NaN NaN 24.972 1 22.089 21.589 22.589 -2.8831 0 0 0 0.61417 1 13630 13630 12.175 1.2758 1 54014 703 36383 37201 62763 62763 0.11020533216742479 RPPQTPLRL 9 Unmodified _RPPQTPLRL_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MSMS AL20221201_MKP_PDAC_01 4 359.8857727050781 3 359.889097 1076.64546 NaN NaN NaN NaN NaN NaN NaN 25.029 1 22.146 21.646 22.646 -2.8831 0 0 0 0.14754 1 13666 13666 37.075 16.494 1 54015 703 36383 37201 62764 62764 0.11020533216742479 RPPQTPLRL 9 Unmodified _RPPQTPLRL_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;nc|ENSG00000048828|Q9NZB2-2|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MSMS AL20221201_MKP_PDAC_01 4 360.2192687988281 3 359.889097 1076.64546 NaN NaN NaN NaN NaN NaN NaN 25.136 1 22.253 21.753 22.753 -2.8831 0 0 0 0.26013 1 13737 13737 27.223 12.266 1 54016 703 36383 37201 62765 62765 0.11020533216742479 RPPRPSSVPL 10 Unmodified _RPPRPSSVPL_ 0 0 0 REV__ENST00000440884.7_1_14:103852007-103852352:+|nuORF REV__ENST00000440884.7_1_14:103852007-103852352:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3274536132812 2 553.327465 1104.64038 0.38498 0.00021302 0.37235 0.00020603 0.75733 0.00041905 553.3275875214572 26.402 0.42999 23.451 23.244 23.674 -2.9511 41 22 3 0 0 0 0.38225 1 14520 14520 22.658 0 1 5405200 + 54017 27082 36384 37202 62766 62766 0.09224229354140334 RPPSPTDPCT 10 Unmodified _RPPSPTDPCT_ 0 0 0 REV__ENST00000527221.1_1_17:79503184-79503550:+|nuORF REV__ENST00000527221.1_1_17:79503184-79503550:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2222290039062 2 535.750398 1069.48624 -0.11059 -5.925E-05 -2.3809 -0.0012756 -2.4915 -0.0013348 535.7486059367737 23.372 0.28652 23.372 23.243 23.529 0 27 13 3 0 0 0 0.23994 1 11973 11973 1.3295 0 1 1364200 + 54018 28385 36385 37203 62767 62767 -0.04571968193545217 RPPVIPAL 8 Unmodified _RPPVIPAL_ 0 0 0 ENST00000559003.5_1_15:45544130-45545988:-|nuORF ENST00000559003.5_1_15:45544130-45545988:-|nuORF ENST00000559003.5_1_15:45544130-45545988:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.7789916992188 2 431.779088 861.543623 -0.47452 -0.00020489 -0.24927 -0.00010763 -0.72379 -0.00031252 431.7790608551457 106.14 0.24529 106.09 105.96 106.21 -0.048111 14 8 2 0 0 0 0.80975 1 58852 58852 0.79363 0 1 2968700 54019 15286 36386 37204 62768 62768 0.10731286864972844 RPPVTKASSF 10 Unmodified _RPPVTKASSF_ 0 0 0 ENST00000548184.1_1_12:57644959-57689258:-|nuORF;nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2 ENST00000548184.1_1_12:57644959-57689258:-|nuORF ENST00000548184.1_1_12:57644959-57689258:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.3082275390625 2 545.306198 1088.59784 NaN NaN NaN NaN NaN NaN NaN 22.528 1 19.749 19.249 20.249 -2.7784 0 0 0 0.4346 1 12120 12120 29.437 13.288 1 54020 8864 36387 37205 62769 62769 0.057088342259021374 RPPWRRWRPWF 11 Unmodified _RPPWRRWRPWF_ 0 0 0 ENST00000532024.1_1_11:70118214-70118385:+|nuORF ENST00000532024.1_1_11:70118214-70118385:+|nuORF ENST00000532024.1_1_11:70118214-70118385:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.447021484375 2 820.447103 1638.87965 0.048872 4.0097E-05 -2.1523 -0.0017659 -2.1035 -0.0017258 820.94612146775 84.397 0.20056 84.46 84.33 84.531 0.063171 19 8 3 0 0 0 0.7453 2 46656 46656;46687 0 0 1 40517000 54021 14919 36388 37206 62770;62771 62770 0.08576849095948091 RPPYERPEL 9 Unmodified _RPPYERPEL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.20849609375 3 386.208495 1155.60366 -0.65554 -0.00025317 0.81781 0.00031584 0.16227 6.267E-05 386.2088943558144 29.977 0.18965 29.977 29.867 30.057 0 19 8 3 0 0 0 0.20507 1 15540 15540 22.658 13.682 1 1800700 54022 974 36389 37207 62772 62772 0.03207932737564079 RPPYLDKY 8 Unmodified _RPPYLDKY_ 0 0 0 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1902465820312 3 351.190553 1050.54983 NaN NaN NaN NaN NaN NaN NaN 0.14456 1 0.1225 -0.3775 0.6225 -0.022065 0 0 0 0.97444 1 79 79 0.40072 0 1 54023 3212 36390 37208 62773 62773 0.026577603058285604 RPPYLDKY 8 Unmodified _RPPYLDKY_ 0 0 0 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1896667480469 3 351.190553 1050.54983 NaN NaN NaN NaN NaN NaN NaN 0.32907 1 0.30701 -0.19299 0.80701 -0.022065 0 0 0 0.97444 1 177 177 0.40072 0 1 54024 3212 36390 37208 62774 62774 0.026577603058285604 RPPYLDKY 8 Unmodified _RPPYLDKY_ 0 0 0 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.190185546875 3 351.190553 1050.54983 NaN NaN NaN NaN NaN NaN NaN 0.70101 1 0.68038 0.18038 1.1804 -0.020623 0 0 0 0.97444 1 364 364 0.40072 0 1 54025 3212 36390 37208 62775 62775 0.026577603058285604 RPQAHRHF 8 Unmodified _RPQAHRHF_ 0 0 0 nc|ENSG00000096264|O95944-3|NCR2;nc|ENSG00000096264|O95944-2|NCR2 nc|ENSG00000096264|O95944-3|NCR2 nc|ENSG00000096264|O95944-3|NCR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7803955078125 2 524.781016 1047.54748 NaN NaN NaN NaN NaN NaN NaN 31.441 1 31.338 30.838 31.838 -0.10269 0 0 0 0.95607 1 16345 16345 9.3474 0 1 54026 16077 36391 37209 62776 62776 0.025607694114114565 RPQAPATVGL 10 Unmodified _RPQAPATVGL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7940673828125 2 505.293091 1008.57163 -0.83499 -0.00042191 0.70695 0.00035722 -0.12804 -6.4696E-05 505.29351855203845 36.61 0.21839 36.361 36.232 36.45 -0.2497 20 9 3 0 0 0 0.13297 1 19212 19212 41.956 21.502 1 8490600 54027 2133 36392 37210 62777 62777 0.06768565054414921 RPQAPATVGL 10 Unmodified _RPQAPATVGL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MSMS AL20221201_MKP_PDAC_01 4 505.2934265136719 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 40.932 1 36.324 35.824 36.824 -4.6079 0 0 0 0.28083 1 24507 24507 38.176 12.776 1 54028 2133 36392 37210 62778 62778 0.06768565054414921 RPQAPATVGL 10 Unmodified _RPQAPATVGL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MSMS AL20221201_MKP_PDAC_01 4 505.2935485839844 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 41.121 1 36.513 36.013 37.013 -4.6079 0 0 0 0.40102 1 24648 24648 31.268 9.5217 1 54029 2133 36392 37210 62779 62779 0.06768565054414921 RPQAPATVGL 10 Unmodified _RPQAPATVGL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.293091 1008.57163 0.90573 0.00045766 0.12451 6.2914E-05 1.0302 0.00052057 505.2932230943019 36.434 0.17669 36.434 36.33 36.507 0 0.05904 -0.0004414 NaN 41.956 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1188800 54030 2133 36392 37210 0.06768565054414921 RPQAPATVGL 10 Unmodified _RPQAPATVGL_ 0 0 0 nc|ENSG00000103363|Q15370-2|ELOB;ENSG00000103363|ENST00000409906|ELOB nc|ENSG00000103363|Q15370-2|ELOB nc|ENSG00000103363|Q15370-2|ELOB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.293091 1008.57163 -0.098229 -4.9635E-05 -0.78033 -0.00039429 -0.87856 -0.00044393 505.29322068344305 36.305 0.14614 36.33 36.25 36.396 0.024967 -0.045062 -0.0013558 NaN 41.956 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 491470 54031 2133 36392 37210 0.06768565054414921 RPQASALEL 9 Unmodified _RPQASALEL_ 0 0 0 ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 ENSG00000072310|ENST00000261646|SREBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7760314941406 2 492.777274 983.539994 -0.37892 -0.00018672 -1.1145 -0.00054922 -1.4935 -0.00073594 492.77662534882637 40.967 0.27753 40.967 40.876 41.154 0 45 20 3 0 0 0 0.0086722 1 22024 22024 88.954 36.686 1 23661000 54032 1078 36393 37211 62780 62780 0.04756572300470907 RPQASHQLL 9 Unmodified _RPQASHQLL_ 0 0 0 ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD ENST00000494399.5_1_1:45478966-45479784:+|nuORF ENST00000494399.5_1_1:45478966-45479784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7972412109375 2 525.296165 1048.57778 0.31195 0.00016387 -0.70554 -0.00037062 -0.39359 -0.00020675 525.2958570701318 24.292 0.29133 21.465 21.323 21.614 -2.8273 23 16 2 0 0 0 0.12424 1 13261 13261 30.637 5.2372 1 4073500 54033 3926 36394 37212 62781 62781 0.05543083285942885 RPQDGVAVL 9 Unmodified _RPQDGVAVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7723388671875 2 477.771991 953.529429 0.21049 0.00010057 0.52342 0.00025007 0.73391 0.00035064 477.77220262642214 37.728 0.49728 37.728 37.51 38.007 0 54 24 3 0 0 0 0.11784 2 20133 20027;20133 31.268 9.5217 1 48139000 54034 10015 36395 37213 62782;62783 62783 0.05080589646047429 RPQDGVAVL 9 Unmodified _RPQDGVAVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7723083496094 2 477.771991 953.529429 0.9481 0.00045298 0.086729 4.1437E-05 1.0348 0.00049441 477.7720352819901 42.418 0.50902 37.734 37.46 37.969 -4.6846 63 33 2 0 0 0 0.05483 2 25764 25613;25764 43.772 15.286 1 113790000 54035 10015 36395 37213 62784;62785 62785 0.05080589646047429 RPQDIRTVL 9 Unmodified _RPQDIRTVL_ 0 0 0 nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3250122070312 2 549.324922 1096.63529 -0.44635 -0.00024519 0.4062 0.00022313 -0.040153 -2.2057E-05 549.3251628320231 36.596 0.195 36.346 36.232 36.427 -0.2497 15 8 2 0 0 0 0.052231 1 19211 19211 27.223 14.983 1 4600400 54036 4725 36396 37214 62786 62786 0.0908392549151813 RPQDIRTVL 9 Unmodified _RPQDIRTVL_ 0 0 0 nc|ENSG00000135622|O95754-2|SEMA4F;ENSG00000135622|ENST00000357877|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F nc|ENSG00000135622|O95754-2|SEMA4F MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.8733215332031 3 366.552374 1096.63529 1.127 0.00041309 -0.25461 -9.3328E-05 0.87236 0.00031976 366.55222600625973 40.454 0.27418 35.924 35.742 36.016 -4.5294 28 16 2 0 0 0 0.21799 1 24218 24218 3.3196 1.4133 1 7232800 54037 4725 36396 37214 62787 62787 0.0908392549151813 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3324584960938 2 558.332216 1114.64988 0.71669 0.00040015 1.0762 0.00060085 1.7929 0.001001 558.3328083099137 52.468 0.28637 52.034 51.891 52.177 -0.43367 40 14 4 0 0 0 0.085319 2 28298 28298;28403 36.506 6.6656 1 27652000 54038 16348 36397 37215 62788;62789 62788 0.0971399763966474 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.5581359863281 3 372.557236 1114.64988 0.5009 0.00018661 2.1012 0.00078282 2.6021 0.00096943 372.5582740268416 52.487 0.21378 52.054 51.964 52.177 -0.43367 22 10 3 0 0 0 0.38785 1 28372 28372 12.873 6.2422 1 8715900 54039 16348 36397 37215 62790 62790 0.0971399763966474 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3324584960938 2 558.332216 1114.64988 0.7655 0.0004274 -0.064448 -3.5984E-05 0.70105 0.00039142 558.3321623953403 52.111 0.43412 52.053 51.854 52.289 -0.058918 59 20 4 0 0 0 0.023481 2 28273 28170;28273 60.074 29.437 1 42074000 54040 16348 36397 37215 62791;62792 62792 0.0971399763966474 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.5574340820312 3 372.557236 1114.64988 0.41057 0.00015296 1.0304 0.00038386 1.4409 0.00053682 372.5575880921315 52.101 0.39346 52.042 51.854 52.248 -0.058918 48 18 4 0 0 0 0.07087 1 28228 28228 30.703 18.476 1 16143000 54041 16348 36397 37215 62793 62793 0.0971399763966474 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.332763671875 2 558.332216 1114.64988 0.90194 0.00050358 -0.70693 -0.0003947 0.19501 0.00010888 558.3319176069998 57.032 0.45905 51.056 50.811 51.27 -5.9769 63 27 3 0 0 0 0.023481 2 36476 36341;36476 60.074 30.233 1 80858000 54042 16348 36397 37215 62794;62795 62795 0.0971399763966474 RPQDKFLVL 9 Unmodified _RPQDKFLVL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1;ENSG00000172840|ENST00000311765|PDP2 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.5574035644531 3 372.557236 1114.64988 1.3174 0.00049081 -0.045528 -1.6962E-05 1.2719 0.00047384 372.5571880526118 57.05 0.40449 51.073 50.827 51.232 -5.9769 39 24 2 0 0 0 0.044011 2 36376 36376;36516 43.982 24.847 1 42733000 54043 16348 36397 37215 62796;62797 62796 0.0971399763966474 RPQDLGQSI 9 Unmodified _RPQDLGQSI_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2714538574219 2 507.272355 1012.53016 -0.093279 -4.7318E-05 -0.23967 -0.00012158 -0.33295 -0.0001689 507.2722763765841 20.593 0.18595 20.593 20.485 20.671 0 25 14 2 0 0 0 0.55775 1 10336 10336 3.9444 0.94915 1 887540 + 54044 22334 36398 37216 62798 62798 0.024393842950985345 RPQDQTVVF 9 Unmodified _RPQDQTVVF_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2879638671875 2 545.288005 1088.56146 0.14158 7.7203E-05 0.0047824 2.6078E-06 0.14636 7.9811E-05 545.2879133205511 40.086 0.32376 40.086 39.912 40.236 0 27 15 2 0 0 0 0.098164 1 21505 21505 33.445 15.299 1 15523000 54045 3676 36399 37217 62799 62799 0.020719573291671622 RPQDQTVVF 9 Unmodified _RPQDQTVVF_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2871704101562 2 545.288005 1088.56146 0.51203 0.0002792 -1.1228 -0.00061222 -0.61073 -0.00033302 545.287434016286 44.674 0.29345 39.822 39.57 39.863 -4.852 46 24 2 0 0 0 0.047788 1 27196 27196 45.7 19.431 1 23718000 54046 3676 36399 37217 62800 62800 0.020719573291671622 RPQGGQDIL 9 Unmodified _RPQGGQDIL_ 0 0 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.267333984375 2 492.267073 982.519593 -0.25279 -0.00012444 -0.25245 -0.00012427 -0.50524 -0.00024871 492.26724105833745 29.425 0.22785 29.425 29.262 29.489 0 36 10 5 0 0 0 0.06294 1 15211 15211 41.84 9.5341 1 2737900 54047 8541 36400 37218 62801 62801 0.027634016406636874 RPQGGQDIL 9 Unmodified _RPQGGQDIL_ 0 0 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 ENSG00000175792|ENST00000322623|RUVBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2675476074219 2 492.267073 982.519593 0.71022 0.00034962 1.117 0.00054987 1.8272 0.00089949 492.2674747796301 32.693 0.33928 28.837 28.635 28.974 -3.8562 30 17 2 0 0 0 0.06294 1 18598 18598 41.84 3.6884 1 11891000 54048 8541 36400 37218 62802 62802 0.027634016406636874 RPQGKGRWQQL 11 Unmodified _RPQGKGRWQQL_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2586975097656 3 451.92146 1352.74255 1.3305 0.00060129 -1.5957 -0.00072111 -0.26514 -0.00011982 451.92110076161447 21.417 0.29653 18.682 18.548 18.844 -2.7348 62 29 3 0 0 0 0.056186 2 11460 11438;11460 41.347 27.129 1 9289000 54049 1780 36401 37219 62803;62804 62804 0.08028895425741212 RPQGKVVAL 9 Unmodified _RPQGKVVAL_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.3056945800781 2 484.306001 966.597449 0.58328 0.00028249 -0.11441 -5.5407E-05 0.46887 0.00022708 484.30602015558 26.911 0.30185 23.875 23.684 23.985 -3.0365 27 15 2 0 0 0 0.022193 1 14827 14827 61.357 34.474 1 14955000 54050 10054 36402 37220 62805 62805 0.11281459296708363 RPQGPERLP 9 Unmodified _RPQGPERLP_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5335083007812 3 350.533202 1048.57778 -0.28429 -9.9654E-05 0.82634 0.00028966 0.54205 0.00019001 350.53346888746347 23.31 0.30386 23.31 23.144 23.448 0 34 14 3 0 0 0 0.41742 1 11844 11844 7.609 0 1 1872600 54051 448 36403 37221 62806 62806 0.05543083285942885 RPQLHKNTVL 10 Unmodified _RPQLHKNTVL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.5751037597656 3 402.57529 1204.70404 -0.10252 -4.1274E-05 0.36676 0.00014765 0.26424 0.00010638 402.57546590676236 19.035 0.22484 19.043 18.951 19.176 0.0078487 32 11 5 0 0 0 0.32533 1 9660 9660 25.997 13.823 1 15190000 54052 3564 36404 37222 62807 62807 0.10987589791216124 RPQLHKNTVL 10 Unmodified _RPQLHKNTVL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5754699707031 3 402.57529 1204.70404 1.3117 0.00052806 -0.82272 -0.00033121 0.48899 0.00019686 402.5749534117797 21.395 0.41694 18.661 18.465 18.882 -2.7348 131 36 4 0 0 0 0.22922 2 11493 11384;11493 31.636 23.191 1 103550000 54053 3564 36404 37222 62808;62809 62809 0.10987589791216124 RPQLHKNTVL 10 Unmodified _RPQLHKNTVL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MSMS AL20221201_MKP_PDAC_01 4 603.3582763671875 2 603.359296 1204.70404 NaN NaN NaN NaN NaN NaN NaN 21.378 1 18.643 18.143 19.143 -2.7348 0 0 0 0.69089 1 11442 11442 24.991 13.351 1 54054 3564 36404 37222 62810 62810 0.10987589791216124 RPQLHKNTVL 10 Unmodified _RPQLHKNTVL_ 0 0 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 402.57529 1204.70404 -0.5271 -0.0002122 0.45372 0.00018266 -0.073374 -2.9539E-05 402.5755431961142 18.971 0.12346 18.994 18.926 19.05 0.023106 0.094702 0.0008945 NaN 31.636 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 971620 54055 3564 36404 37222 0.10987589791216124 RPQLKGVVL 9 Unmodified _RPQLKGVVL_ 0 0 0 ENSG00000128626|ENST00000308018|MRPS12 ENSG00000128626|ENST00000308018|MRPS12 ENSG00000128626|ENST00000308018|MRPS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3292236328125 2 505.329476 1008.6444 0.24765 0.00012515 -0.7974 -0.00040295 -0.54975 -0.0002778 505.32908120292427 38.559 0.26318 38.575 38.46 38.723 0.016232 29 12 3 0 0 0 0.05447 1 20501 20501 43.858 16.975 1 11951000 54056 4080 36405 37223 62811 62811 0.14042318847862134 RPQLKGVVL 9 Unmodified _RPQLKGVVL_ 0 0 0 ENSG00000128626|ENST00000308018|MRPS12 ENSG00000128626|ENST00000308018|MRPS12 ENSG00000128626|ENST00000308018|MRPS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3305053710938 2 505.329476 1008.6444 0.99726 0.00050395 -0.16633 -8.4054E-05 0.83093 0.00041989 505.3293139127809 42.773 0.37477 38.088 37.902 38.277 -4.6846 41 23 2 0 0 0 0.022193 2 25952 25813;25952 61.357 32.871 1 17674000 54057 4080 36405 37223 62812;62813 62813 0.14042318847862134 RPQLLKNAL 9 Unmodified _RPQLLKNAL_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.832763671875 2 526.832383 1051.65021 -0.033612 -1.7708E-05 0.15732 8.2883E-05 0.12371 6.5176E-05 526.832499448068 35.125 0.19395 35.152 35.039 35.233 0.027401 18 8 3 0 0 0 0.01958 1 18545 18545 71.134 18.865 1 2459300 54058 4012 36406 37224 62814 62814 0.12645417359499334 RPQLLKNAL 9 Unmodified _RPQLLKNAL_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5570983886719 3 351.557348 1051.65021 -0.12097 -4.2527E-05 -0.10105 -3.5524E-05 -0.22201 -7.8051E-05 351.55735119856257 35.127 0.19395 35.154 35.039 35.233 0.027401 14 8 2 0 0 0 0.062454 1 18571 18571 41.956 30.438 1 1687900 54059 4012 36406 37224 62815 62815 0.12645417359499334 RPQLLKNAL 9 Unmodified _RPQLLKNAL_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;nc|ENSG00000127483|Q5SSJ5-3|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 351.557348 1051.65021 1.412 0.00049639 -0.46007 -0.00016174 0.95189 0.00033465 351.5573492529037 39.607 0.30161 35.156 34.98 35.281 -4.4509 0.00080128 -0.00016861 NaN 41.956 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 6714800 54060 4012 36406 37224 0.12645417359499334 RPQLPAYES 9 Unmodified _RPQLPAYES_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1861267089844 3 354.185579 1059.53491 -0.34276 -0.0001214 1.0037 0.0003555 0.66095 0.0002341 354.18603023389153 22.037 0.25694 22.037 21.947 22.204 0 25 18 2 0 0 0 0.55775 1 11170 11170 2.2828 0 1 615140 54061 2865 36407 37225 62816 62816 0.007522684378500344 RPQLQRQVL 9 Unmodified _RPQLQRQVL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3477783203125 2 569.346189 1136.67783 NaN NaN NaN NaN NaN NaN NaN 27.156 1 27.185 26.685 27.685 0.028664 0 0 0 0.56093 1 14108 14108 13.906 3.8321 1 54062 6769 36408 37226 62817 62817 0.114953206197697 RPQLQRQVL 9 Unmodified _RPQLQRQVL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3470458984375 2 569.346189 1136.67783 1.1408 0.00064953 0.40559 0.00023092 1.5464 0.00088046 569.8477708655994 30.431 0.27196 26.934 26.757 27.029 -3.497 23 13 2 0 0 0 0.070838 1 17145 17145 39.957 13.074 1 13499000 54063 6769 36408 37226 62818 62818 0.114953206197697 RPQLQRQVL 9 Unmodified _RPQLQRQVL_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL;ENST00000497613.2_1_8:145658938-145666334:-|nuORF nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.9007873535156 3 379.899885 1136.67783 1.4751 0.00056039 0.55675 0.00021151 2.0318 0.0007719 379.90019888602126 30.421 0.31365 26.924 26.757 27.07 -3.497 27 15 2 0 0 0 0.039985 1 17203 17203 38.615 24.209 1 24693000 54064 6769 36408 37226 62819 62819 0.114953206197697 RPQLRSVLL 9 Unmodified _RPQLRSVLL_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.344970703125 2 541.345658 1080.67676 0.27673 0.00014981 -0.37743 -0.00020432 -0.10071 -5.4516E-05 541.3453515291422 43.757 0.23094 43.742 43.572 43.803 -0.015667 23 10 3 0 0 0 0.022461 1 23419 23419 57.722 30.093 1 36377000 54065 859 36409 37227 62820 62820 0.13965106250861936 RPQLRSVLL 9 Unmodified _RPQLRSVLL_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2320861816406 3 361.232864 1080.67676 0.19689 7.1122E-05 -0.0038405 -1.3873E-06 0.19305 6.9735E-05 361.23285310343636 43.734 0.18645 43.718 43.617 43.803 -0.015671 14 8 2 0 0 0 0.082934 1 23426 23426 37.075 17.713 1 23142000 54066 859 36409 37227 62821 62821 0.13965106250861936 RPQLRSVLL 9 Unmodified _RPQLRSVLL_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;ENST00000591718.1_1_19:55966993-55972941:-|nuORF ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.345947265625 2 541.345658 1080.67676 0.68648 0.00037163 -0.14327 -7.7558E-05 0.54321 0.00029407 541.3455976989325 80.258 0.54652 74.083 73.822 74.369 -6.1757 66 31 3 0 0 0 0.014182 2 52711 52577;52711 66.457 35.188 1 59264000 54067 859 36409 37227 62822;62823 62823 0.13965106250861936 RPQMVKISKL 10 Unmodified _RPQMVKISKL_ 0 0 0 ENST00000497170.5_1_13:101795259-101997694:-|nuORF;ENSG00000102452|ENST00000251127|NALCN ENST00000497170.5_1_13:101795259-101997694:-|nuORF ENST00000497170.5_1_13:101795259-101997694:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2476196289062 3 400.581276 1198.722 NaN NaN NaN NaN NaN NaN NaN 25.749 1 25.775 25.275 26.275 0.026951 0 0 0 0.94046 1 13339 13339 6.1918 1.4759 1 54068 2045 36410 37228 62824 62824 0.13058588721719389 RPQPGRENF 9 Unmodified _RPQPGRENF_ 0 0 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5415344238281 3 367.524707 1099.55229 -0.54446 -0.0002001 -0.16637 -6.1144E-05 -0.71083 -0.00026125 367.524414650409 17.945 0.18957 17.945 17.791 17.981 0 45 33 2 0 0 0 0.21302 1 8898 8898 6.1918 3.9391 1 656630 54069 6604 36411 37229 62825 62825 0.006496087635014192 RPQPGRENF 9 Unmodified _RPQPGRENF_ 0 0 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MSMS AL20221201_MKP_PDAC_01 4 367.5254821777344 3 367.524707 1099.55229 NaN NaN NaN NaN NaN NaN NaN 18.878 1 16.257 15.757 16.757 -2.6215 0 0 0 0.41346 1 9968 9968 23.79 12.99 1 54070 6604 36411 37229 62826 62826 0.006496087635014192 RPQPQTLQL 9 Unmodified _RPQPQTLQL_ 0 0 0 ENSG00000104671|ENST00000221114|DCTN6 ENSG00000104671|ENST00000221114|DCTN6 ENSG00000104671|ENST00000221114|DCTN6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.2764892578125 2 540.811648 1079.60874 0.41899 0.0002266 0.014013 7.5783E-06 0.43301 0.00023418 540.8116290865871 44.836 0.38758 39.984 39.801 40.188 -4.852 49 27 3 0 0 0 0.10271 1 27471 27471 39.95 15.929 1 21964000 54071 2221 36412 37230 62827 62827 0.07212236600184951 RPQPVKSEL 9 Unmodified _RPQPVKSEL_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8733825683594 3 351.873224 1052.59784 -0.45683 -0.00016075 0.34543 0.00012155 -0.11141 -3.9201E-05 351.87326937320455 19.384 0.19258 19.384 19.282 19.475 0 23 12 3 0 0 0 0.19127 1 9676 9676 22.658 11.859 1 861750 54072 5206 36413 37231 62828 62828 0.07364834225904815 RPQPVKSEL 9 Unmodified _RPQPVKSEL_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.305908203125 2 527.306198 1052.59784 -0.12698 -6.6955E-05 0.10816 5.7031E-05 -0.01882 -9.924E-06 527.306115981871 19.386 0.1519 19.386 19.282 19.434 0 15 9 2 0 0 0 0.43463 1 9689 9689 10.824 3.5347 1 642730 54073 5206 36413 37231 62829 62829 0.07364834225904815 RPQPVKSEL 9 Unmodified _RPQPVKSEL_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8733215332031 3 351.873224 1052.59784 1.9075 0.00067118 -0.32595 -0.00011469 1.5815 0.00055649 351.87302805093555 21.426 0.26 18.691 18.603 18.863 -2.7348 60 26 3 0 0 0 0.10247 2 11443 11443;11561 24.882 16.437 1 7261400 54074 5206 36413 37231 62830;62831 62830 0.07364834225904815 RPQPVKSEL 9 Unmodified _RPQPVKSEL_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3055419921875 2 527.306198 1052.59784 1.2344 0.0006509 -0.83637 -0.00044103 0.39801 0.00020987 527.3055656865481 21.451 0.19824 18.716 18.629 18.827 -2.7348 31 21 2 0 0 0 0.029718 1 11465 11465 55.503 26.421 1 2964400 54075 5206 36413 37231 62832 62832 0.07364834225904815 RPQPVKSEL 9 Unmodified _RPQPVKSEL_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.306198 1052.59784 -0.14376 -7.5808E-05 0.28127 0.00014832 0.13751 7.251E-05 527.3063139455243 18.987 0.14102 18.987 18.919 19.06 0 0.13518 0.00066065 NaN 55.503 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 493070 54076 5206 36413 37231 0.07364834225904815 RPQPVLPLL 9 Unmodified _RPQPVLPLL_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8298950195312 2 516.831852 1031.64915 0.19478 0.00010067 -0.98912 -0.00051121 -0.79434 -0.00041054 516.8313490417087 72.781 0.30659 72.822 72.661 72.968 0.041733 35 14 3 0 0 0 0.16226 2 40026 40026;40139 26.884 2.2098 1 5089600 54077 9914 36414 37232 62833;62834 62833 0.1345920299061163 RPQRATSNVF 10 Unmodified _RPQRATSNVF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5473937988281 3 392.547511 1174.6207 0.01253 4.9187E-06 -0.17584 -6.9025E-05 -0.16331 -6.4107E-05 392.54740980687075 20.828 0.26744 20.838 20.72 20.988 0.010551 38 14 4 0 0 0 0.48505 1 10623 10623 19.626 11.182 1 23057000 54078 3386 36415 37233 62835 62835 0.04037853343356801 RPQRATSNVF 10 Unmodified _RPQRATSNVF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3173217773438 2 588.317628 1174.6207 0.24273 0.0001428 -0.87439 -0.00051442 -0.63166 -0.00037162 588.3172413853048 20.841 0.18436 20.852 20.759 20.943 0.010553 24 9 3 0 0 0 0.56348 1 10625 10625 13.042 4.4492 1 11952000 54079 3386 36415 37233 62836 62836 0.04037853343356801 RPQRATSNVF 10 Unmodified _RPQRATSNVF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5478210449219 3 392.547511 1174.6207 0.45991 0.00018054 0.11845 4.6497E-05 0.57836 0.00022703 392.5475643938273 22.885 0.47172 20.107 19.887 20.359 -2.7784 88 33 3 0 0 0 0.38092 2 12243 12243;12358 18.721 13.319 1 84174000 54080 3386 36415 37233 62837;62838 62837 0.04037853343356801 RPQRATSNVF 10 Unmodified _RPQRATSNVF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3177490234375 2 588.317628 1174.6207 0.11391 6.7013E-05 0.045823 2.6958E-05 0.15973 9.3971E-05 588.3176934305606 22.887 0.41625 20.108 19.92 20.336 -2.7784 73 28 3 0 0 0 0.42143 1 12266 12266 20.415 11.031 1 46027000 54081 3386 36415 37233 62839 62839 0.04037853343356801 RPQRATSNVF 10 Unmodified _RPQRATSNVF_ 0 0 0 ENSG00000118680|ENST00000237500|MYL12B;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000101335|ENST00000279022|MYL9;ENST00000577510.5_1_18:3252320-3253446:+|nuORF;ENST00000580353.1_1_18:3247898-3253446:+|nuORF;nc|ENSG00000101335|P24844-2|MYL9 ENSG00000118680|ENST00000237500|MYL12B ENSG00000118680|ENST00000237500|MYL12B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.547511 1174.6207 -0.29673 -0.00011648 -0.026919 -1.0567E-05 -0.32365 -0.00012705 392.8815297000393 20.892 0.16013 20.921 20.819 20.98 0.028355 0.04127 0.00015202 NaN 19.626 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 488700 54082 3386 36415 37233 0.04037853343356801 RPQSIKLQI 9 Unmodified _RPQSIKLQI_ 0 0 0 ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.5606079101562 3 361.560869 1081.66078 -0.48047 -0.00017372 0.31221 0.00011288 -0.16825 -6.0834E-05 361.56086477492926 19.721 0.12654 19.749 19.691 19.817 0.028357 14 8 2 0 0 0 0.5029 1 9962 9962 16.149 0 1 602120 54083 11190 36416 37234 62840 62840 0.12321400013956918 RPQSIKLQI 9 Unmodified _RPQSIKLQI_ 0 0 0 ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.560869 1081.66078 -0.45086 -0.00016301 0.34787 0.00012578 -0.10298 -3.7235E-05 361.56110016340506 19.858 0.11094 19.858 19.777 19.888 0 0.06837 -0.0002543 NaN 16.149 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 431310 54084 11190 36416 37234 0.12321400013956918 RPQSIKLQI 9 Unmodified _RPQSIKLQI_ 0 0 0 ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF ENST00000257336.5_1_13:103459816-103460068:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 361.560869 1081.66078 0.027309 9.8737E-06 1.0195 0.00036862 1.0468 0.00037849 361.5613220772492 19.754 0.12909 19.762 19.672 19.801 0.0078487 -0.027619 0.00047422 NaN 16.149 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 436060 54085 11190 36416 37234 0.12321400013956918 RPQSSRPVL 9 Unmodified _RPQSSRPVL_ 0 0 0 ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1 ENST00000483061.1_1_2:224765805-224810001:-|nuORF ENST00000483061.1_1_2:224765805-224810001:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3035278320312 2 520.30399 1038.59343 0.065472 3.4065E-05 0.49021 0.00025506 0.55568 0.00028912 520.3043151549637 19.389 0.18047 19.397 19.301 19.481 0.0078487 24 10 3 0 0 0 0.2546 1 9848 9848 19.362 7.8672 1 2163700 54086 1411 36417 37235 62841 62841 0.07567369802995927 RPQSSRPVL 9 Unmodified _RPQSSRPVL_ 0 0 0 ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1 ENST00000483061.1_1_2:224765805-224810001:-|nuORF ENST00000483061.1_1_2:224765805-224810001:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.304443359375 2 520.30399 1038.59343 1.262 0.00065665 -0.38465 -0.00020014 0.87739 0.00045651 520.3037419373594 20.763 0.34325 18.07 17.882 18.225 -2.693 52 22 3 0 0 0 0.069655 2 11118 11011;11118 40.239 18.702 1 7001900 54087 1411 36417 37235 62842;62843 62843 0.07567369802995927 RPQSSRPVLL 10 Unmodified _RPQSSRPVLL_ 0 0 0 ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1 ENST00000483061.1_1_2:224765805-224810001:-|nuORF ENST00000483061.1_1_2:224765805-224810001:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8999938964844 3 384.899773 1151.67749 NaN NaN NaN NaN NaN NaN NaN 31.162 1 31.192 30.692 31.692 0.030106 0 0 0 0.56653 1 16316 16316 23.016 8.0585 1 54088 1411 36418 37236 62844 62844 0.1077190089990836 RPQSSRPVLL 10 Unmodified _RPQSSRPVLL_ 0 0 0 ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1 ENST00000483061.1_1_2:224765805-224810001:-|nuORF ENST00000483061.1_1_2:224765805-224810001:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.8467407226562 2 576.846022 1151.67749 1.4749 0.00085081 -0.069578 -4.0136E-05 1.4054 0.00081067 576.8460461878898 33.862 0.37267 29.877 29.693 30.065 -3.9853 34 19 2 0 0 0 0.28721 1 19439 19439 15.248 8.5253 1 6136300 54089 1411 36418 37236 62845 62845 0.1077190089990836 RPQSSRPVLL 10 Unmodified _RPQSSRPVLL_ 0 0 0 ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1 ENST00000483061.1_1_2:224765805-224810001:-|nuORF ENST00000483061.1_1_2:224765805-224810001:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.9005432128906 3 384.899773 1151.67749 NaN NaN NaN NaN NaN NaN NaN 33.877 1 29.892 29.392 30.392 -3.9853 0 0 0 0.72561 1 19472 19472 15.538 3.2978 1 54090 1411 36418 37236 62846 62846 0.1077190089990836 RPQTGLSFL 9 Unmodified _RPQTGLSFL_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.787841796875 2 509.787641 1017.56073 0.75593 0.00038536 -0.26924 -0.00013725 0.48669 0.00024811 509.7875282602328 58.841 0.49829 58.781 58.505 59.003 -0.060719 76 24 4 0 0 0 0.085319 2 31978 31978;32080 36.506 12.486 1 26108000 54091 468 36419 37237 62847;62848 62847 0.05265162680132107 RPQTGLSFL 9 Unmodified _RPQTGLSFL_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7879028320312 2 509.787641 1017.56073 1.232 0.00062808 0.15393 7.8469E-05 1.386 0.00070655 509.78759464466947 64.053 0.64188 57.877 57.579 58.221 -6.1757 77 34 3 0 0 0 0.078314 2 41483 41348;41483 38.176 7.539 1 74531000 54092 468 36419 37237 62849;62850 62850 0.05265162680132107 RPQVAKTLL 9 Unmodified _RPQVAKTLL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3273315429688 2 513.326934 1024.63931 0.84007 0.00043123 0.32524 0.00016696 1.1653 0.00059819 513.3270585037416 34.835 0.25276 30.74 30.616 30.869 -4.0951 25 14 2 0 0 0 0.08691 1 20108 20108 36.127 10.728 1 6121600 54093 1608 36420 37238 62851 62851 0.12798014985241934 RPQVMTTSF 9 Oxidation (M) _RPQVM(Oxidation (M))TTSF_ RPQVM(1)TTSF RPQVM(46)TTSF 0 0 1 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7699584960938 2 541.768591 1081.52263 NaN NaN NaN NaN NaN NaN NaN 29.755 1 29.755 29.255 30.255 0 0 0 0 0.091025 1 15426 15426 45.7 24.163 1 54094 7922 36421 37239 62852 62852 1352 -0.014870912968490302 RPQVMTTSF 9 Oxidation (M) _RPQVM(Oxidation (M))TTSF_ RPQVM(1)TTSF RPQVM(63)TTSF 0 0 1 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7693481445312 2 541.768591 1081.52263 0.4679 0.00025349 0.39403 0.00021347 0.86192 0.00046696 541.7686884828003 29.769 0.39712 29.688 29.551 29.948 -0.080431 30 17 2 0 0 0 0.020973 1 15421 15421 62.573 16.873 1 14882000 54095 7922 36421 37239 62853 62853 1352 -0.014870912968490302 RPQVMTTSF 9 Oxidation (M) _RPQVM(Oxidation (M))TTSF_ RPQVM(1)TTSF RPQVM(46)TTSF 0 0 1 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7706298828125 2 541.768591 1081.52263 0.82754 0.00044834 -0.94934 -0.00051432 -0.1218 -6.5985E-05 541.7678235939192 33.422 0.38389 29.437 29.205 29.589 -3.9853 34 21 2 0 0 0 0.047788 1 19115 19115 45.7 7.524 1 26219000 54096 7922 36421 37239 62854 62854 1352 -0.014870912968490302 RPQVMTTSF 9 Oxidation (M) _RPQVM(Oxidation (M))TTSF_ 0 0 1 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.768591 1081.52263 -0.0004757 -2.5772E-07 0.89416 0.00048443 0.89368 0.00048417 541.7687150531199 29.731 0.22203 29.762 29.589 29.811 0.030104 0.13256 0.00077326 NaN 62.573 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1485800 54097 7922 36421 37239 1352 -0.014870912968490302 RPQVMTTSF 9 Unmodified _RPQVMTTSF_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7696533203125 2 533.771134 1065.52771 0.50431 0.00026918 -1.3192 -0.00070415 -0.8149 -0.00043497 533.7703384420748 44.84 0.51838 39.988 39.775 40.294 -4.852 63 38 2 0 0 0 0.032796 2 27316 27316;27444 53.833 19.431 1 57239000 54098 7922 36421 37240 62855;62856 62855 -0.002427874342401992 RPQYQRFM 8 Unmodified _RPQYQRFM_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8586730957031 3 375.858921 1124.55493 NaN NaN NaN NaN NaN NaN NaN 17.989 1 17.989 17.489 18.489 0 0 0 0 0.97444 1 8911 8911 0.40072 0 1 54099 8817 36422 37241 62857 62857 -0.002362591031669581 RPRAANGVNE 10 Unmodified _RPRAANGVNE_ 0 0 0 REV__ENSG00000117586|ENST00000281834|TNFSF4 REV__ENSG00000117586|ENST00000281834|TNFSF4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.4600830078125 3 361.859978 1082.5581 1.352 0.00048924 3.2308 0.0011691 4.5828 0.0016583 361.86051123840025 38.315 0.22219 33.946 33.87 34.092 -4.3689 17 13 2 0 0 0 0.23279 1 22610 22610 8.4443 6.6001 1 4991100 + 54100 19114 36423 37242 62858 62858 0.020127072751847663 RPRAANGVNE 10 Unmodified _RPRAANGVNE_ 0 0 0 REV__ENSG00000117586|ENST00000281834|TNFSF4 REV__ENSG00000117586|ENST00000281834|TNFSF4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.859978 1082.5581 -0.64384 -0.00023298 2.7734 0.0010036 2.1296 0.00077061 361.8607086870855 34.184 0.14972 34.184 34.14 34.289 0 0.11872 -0.00011992 NaN 8.4443 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2718600 + 54101 19114 36423 37242 0.020127072751847663 RPRAEAIEL 9 Unmodified _RPRAEAIEL_ 0 0 0 REV__ENST00000400984.2_1_1:161375932-161376085:+|nuORF REV__ENST00000400984.2_1_1:161375932-161376085:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.5130920410156 3 352.204974 1053.59309 0.98456 0.00034677 -0.55497 -0.00019546 0.42959 0.0001513 352.2046715502646 26.239 0.29676 23.288 23.184 23.481 -2.9511 23 16 2 0 0 0 0.19994 1 14462 14462 12.241 2.8575 1 6476700 + 54102 26604 36424 37243 62859 62859 0.06843950083134587 RPRAGASISTL 11 Unmodified _RPRAGASISTL_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8884582519531 3 376.887645 1127.64111 0.20341 7.6663E-05 0.21648 8.159E-05 0.41989 0.00015825 376.8877600624586 26.008 0.22403 26.035 25.912 26.136 0.026951 22 10 3 0 0 0 0.01584 1 13453 13453 43.477 14.982 1 14191000 54103 4464 36425 37244 62860 62860 0.08239024003182749 RPRAGASISTL 11 Unmodified _RPRAGASISTL_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8287963867188 2 564.827829 1127.64111 NaN NaN NaN NaN NaN NaN NaN 26 1 26.026 25.526 26.526 0.026951 0 0 0 0.46128 1 13476 13476 26.021 3.2844 1 54104 4464 36425 37244 62861 62861 0.08239024003182749 RPRAGASISTL 11 Unmodified _RPRAGASISTL_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS AL20221201_MKP_PDAC_01 4 564.8276977539062 2 564.827829 1127.64111 NaN NaN NaN NaN NaN NaN NaN 29.131 1 25.83 25.33 26.33 -3.3016 0 0 0 0.00028607 1 16327 16327 87.258 19.42 1 54105 4464 36425 37244 62862 62862 0.08239024003182749 RPRAGASISTL 11 Unmodified _RPRAGASISTL_ 0 0 0 ENSG00000132912|ENST00000447998|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF;nc|ENSG00000132912|Q9UJW0-2|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MSMS AL20221201_MKP_PDAC_01 4 376.8880615234375 3 376.887645 1127.64111 NaN NaN NaN NaN NaN NaN NaN 29.136 1 25.834 25.334 26.334 -3.3016 0 0 0 0.052661 1 16330 16330 43.477 1.5213 1 54106 4464 36425 37244 62863 62863 0.08239024003182749 RPRAPIIAV 9 Unmodified _RPRAPIIAV_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8215942382812 2 496.821818 991.629084 0.17912 8.899E-05 0.066539 3.3058E-05 0.24566 0.00012205 496.821805231629 38.186 0.26608 38.203 38.048 38.314 0.01704 27 11 3 0 0 0 0.06187 1 20259 20259 42.095 18.946 1 7485700 54107 954 36426 37245 62864 62864 0.13293452050652377 RPRAPVRLL 9 Unmodified _RPRAPVRLL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.9050598144531 3 359.90497 1076.69308 1.4691 0.00052872 -0.51652 -0.0001859 0.95255 0.00034283 359.9048368406105 77.854 0.68188 71.678 71.292 71.973 -6.1757 69 38 2 0 0 0 0.19361 2 50928 50928;51067 23.79 6.6769 1 15611000 54108 10329 36427 37246 62865;62866 62865 0.15780232207612244 RPRASTTMF 9 Unmodified _RPRASTTMF_ 0 0 0 ENST00000483882.1_1_11:47281281-47282064:+|nuORF;ENST00000476086.6_1_11:47279593-47282064:+|nuORF;ENST00000527464.5_1_11:47270295-47282064:+|nuORF;ENST00000441012.6_1_11:47279523-47282064:+|nuORF ENST00000483882.1_1_11:47281281-47282064:+|nuORF ENST00000483882.1_1_11:47281281-47282064:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.77734375 2 533.776751 1065.53895 NaN NaN NaN NaN NaN NaN NaN 27.999 1 24.851 24.351 25.351 -3.1482 0 0 0 0.091025 1 15570 15570 45.7 11.597 1 54109 13391 36428 37247 62867 62867 0.008800346599173281 RPRATVMVM 9 Unmodified _RPRATVMVM_ 0 0 0 nc|ENSG00000182220|O75787-2|ATP6AP2;ENSG00000182220|ENST00000636580|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 nc|ENSG00000182220|O75787-2|ATP6AP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.198486328125 3 354.196656 1059.56814 1.6466 0.00058321 0.43006 0.00015232 2.0766 0.00073554 354.1972517023822 34.3 0.24448 30.315 30.167 30.411 -3.9853 25 13 3 0 0 0 0.039985 1 19739 19739 38.615 10.12 1 12332000 54110 9032 36429 37248 62868 62868 0.04073855684555383 RPRAVEESSLN 11 Unmodified _RPRAVEESSLN_ 0 0 0 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 MSMS AL20221201_MKP_PDAC_01 4 419.8900451660156 3 419.889714 1256.64731 NaN NaN NaN NaN NaN NaN NaN 20.636 1 17.943 17.443 18.443 -2.693 0 0 0 0.93969 1 11000 11000 1.1098 0 1 + 54111 19149 36430 37249 62869 62869 0.029254974440618753 RPRCSETRL 9 Unmodified _RPRCSETRL_ 0 0 0 REV__ENSG00000109255|ENST00000264218|NMU REV__ENSG00000109255|ENST00000264218|NMU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.300048828125 2 559.298381 1116.58221 NaN NaN NaN NaN NaN NaN NaN 93.519 1 93.519 93.019 94.019 0 0 0 0 0.85029 1 51702 51702 1.4819 0 1 + 54112 18653 36431 37250 62870 62870 0.02858224437204626 RPRDALPRL 9 Unmodified _RPRDALPRL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2244262695312 3 365.22448 1092.65161 1.6867 0.00061602 -1.3096 -0.00047831 0.37704 0.00013771 365.2237840918666 32.271 0.68567 28.415 28.11 28.796 -3.8562 69 38 3 0 0 0 0.036857 1 18277 18277 47.732 23.931 1 24933000 54113 7248 36432 37251 62871 62871 0.10899051448268438 RPRDALPRLL 10 Unmodified _RPRDALPRLL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.9190063476562 3 402.919168 1205.73567 -0.22955 -9.2488E-05 0.13596 5.4781E-05 -0.093586 -3.7708E-05 402.9192024018165 41.363 0.41864 41.361 41.096 41.515 -0.0017929 46 19 3 0 0 0 0.1379 2 22134 22024;22134 41.347 25.608 1 16341000 54114 7248 36433 37252 62872;62873 62873 0.1410358254518087 RPRDALPRLL 10 Unmodified _RPRDALPRLL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9196472167969 3 402.919168 1205.73567 0.3155 0.00012712 -0.10197 -4.1087E-05 0.21352 8.6032E-05 402.91926468815416 85.284 1.0891 79.108 78.657 79.746 -6.1757 120 65 2 0 0 0 0.59286 1 56378 56378 11.518 3.0736 1 40500000 54115 7248 36433 37252 62874 62874 0.1410358254518087 RPRDDLDRL 9 Unmodified _RPRDDLDRL_ 0 0 0 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.8565368652344 3 385.879149 1154.61562 0.38539 0.00014872 0.5861 0.00022616 0.97149 0.00037488 385.8791384436363 25.164 0.28153 22.281 22.249 22.531 -2.8831 31 20 2 0 0 0 0.10852 1 13751 13751 31.636 18.763 1 7449200 54116 2458 36434 37253 62875 62875 0.0444954948072791 RPRDDLDRL 9 Unmodified _RPRDDLDRL_ 0 0 0 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 ENSG00000106785|ENST00000341469|TRIM14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 385.879149 1154.61562 -0.37105 -0.00014318 1.1226 0.00043318 0.75153 0.00029 385.8795528893484 22.509 0.20918 22.509 22.402 22.611 0 0.11412 0.00039042 NaN 31.636 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 814410 54117 2458 36434 37253 0.0444954948072791 RPRDEVQEVVY 11 Unmodified _RPRDEVQEVVY_ 0 0 0 nc|ENSG00000136193|Q12765-2|SCRN1;ENSG00000136193|ENST00000242059|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.9080200195312 3 463.908886 1388.70483 0.097639 4.5296E-05 -0.78798 -0.00036555 -0.69034 -0.00032026 463.9085407934035 30.812 0.28246 30.812 30.65 30.932 0 37 13 4 0 0 0 0.39704 1 15986 15986 21.666 15.432 1 10321000 54118 4797 36435 37254 62876 62876 0.026023396496157147 RPRDEVQEVVY 11 Unmodified _RPRDEVQEVVY_ 0 0 0 nc|ENSG00000136193|Q12765-2|SCRN1;ENSG00000136193|ENST00000242059|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 695.3595581054688 2 695.35969 1388.70483 -0.52953 -0.00036822 0.14744 0.00010253 -0.38209 -0.00026569 695.359853039284 30.795 0.18214 30.795 30.69 30.872 0 16 8 2 0 0 0 0.50539 1 16003 16003 24.882 13.387 1 2994500 54119 4797 36435 37254 62877 62877 0.026023396496157147 RPRDEVQEVVY 11 Unmodified _RPRDEVQEVVY_ 0 0 0 nc|ENSG00000136193|Q12765-2|SCRN1;ENSG00000136193|ENST00000242059|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 695.3605346679688 2 695.35969 1388.70483 0.42101 0.00029275 0.27475 0.00019105 0.69576 0.0004838 695.3596646261402 34.655 0.31493 30.56 30.473 30.788 -4.0951 40 18 3 0 0 0 0.017394 1 20012 20012 70.496 58.255 1 7505800 54120 4797 36435 37254 62878 62878 0.026023396496157147 RPRDEVQEVVY 11 Unmodified _RPRDEVQEVVY_ 0 0 0 nc|ENSG00000136193|Q12765-2|SCRN1;ENSG00000136193|ENST00000242059|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 nc|ENSG00000136193|Q12765-2|SCRN1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 463.908886 1388.70483 0.85648 0.00039733 0.04546 2.1089E-05 0.90194 0.00041842 463.90891699217207 34.671 0.36336 30.576 30.438 30.801 -4.0951 -0.11836 0.00061854 NaN 21.666 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 17941000 54121 4797 36435 37254 0.026023396496157147 RPRDKQMEL 9 Unmodified _RPRDKQMEL_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3136596679688 2 586.813864 1171.61318 0.53196 0.00031216 -1.6843 -0.00098835 -1.1523 -0.00067619 586.8138785079068 18.054 0.24742 15.433 15.314 15.562 -2.6215 40 18 3 0 0 0 0.42 1 9446 9446 11.495 2.7493 1 4654500 54122 2679 36436 37255 62879 62879 0.03423377751460066 RPRDLEDFF 9 Unmodified _RPRDLEDFF_ 0 0 0 ENST00000556186.5_1_14:23373460-23374730:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-5|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23 ENST00000556186.5_1_14:23373460-23374730:-|nuORF ENST00000556186.5_1_14:23373460-23374730:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8687133789062 3 398.86825 1193.58292 NaN NaN NaN NaN NaN NaN NaN 57.074 1 57.074 56.574 57.574 0 0 0 0 0.83329 1 31755 31755 2.086 0 1 54123 1831 36437 37256 62880 62880 -0.006126576421138452 RPRDLEDFF 9 Unmodified _RPRDLEDFF_ 0 0 0 ENST00000556186.5_1_14:23373460-23374730:-|nuORF;nc|ENSG00000100461|Q86U06-3|RBM23;ENST00000557667.5_1_14:23373372-23380602:-|nuORF;nc|ENSG00000100461|Q86U06-4|RBM23;nc|ENSG00000100461|Q86U06-5|RBM23;nc|ENSG00000100461|Q86U06-2|RBM23;ENSG00000100461|ENST00000359890|RBM23 ENST00000556186.5_1_14:23373460-23374730:-|nuORF ENST00000556186.5_1_14:23373460-23374730:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.8679809570312 3 398.86825 1193.58292 0.48311 0.0001927 -2.0389 -0.00081324 -1.5558 -0.00062054 399.2014048933376 57.516 0.18304 57.026 56.923 57.106 -0.48974 11 8 2 0 0 0 0.56345 1 31271 31271 7.1017 4.1065 1 2480000 54124 1831 36437 37256 62881 62881 -0.006126576421138452 RPRDLEEFF 9 Unmodified _RPRDLEEFF_ 0 0 0 nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-2|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5398559570312 3 403.540134 1207.59857 0.2959 0.00011941 -0.352 -0.00014205 -0.056101 -2.2639E-05 403.53990806845684 53.529 0.26536 53.529 53.38 53.645 0 28 12 3 0 0 0 0.20428 1 29686 29686 16.566 7.8141 1 3405700 54125 4293 36438 37257 62882 62882 0.003076288749298328 RPRDLEEFF 9 Unmodified _RPRDLEEFF_ 0 0 0 nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-2|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.80615234375 2 604.806562 1207.59857 0.14793 8.9467E-05 -1.6472 -0.00099626 -1.4993 -0.00090679 604.8054615135671 53.537 0.18731 53.537 53.439 53.627 0 13 8 2 0 0 0 0.25681 1 29701 29701 19.257 4.6753 1 3358600 54126 4293 36438 37257 62883 62883 0.003076288749298328 RPRDLEEFF 9 Unmodified _RPRDLEEFF_ 0 0 0 nc|ENSG00000131051|Q14498-3|RBM39;ENSG00000131051|ENST00000253363|RBM39;ENST00000492779.5_1_20:34292405-34320086:-|nuORF;ENST00000429968.5_1_20:34292405-34322136:-|nuORF;nc|ENSG00000131051|Q14498-2|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 nc|ENSG00000131051|Q14498-3|RBM39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5403137207031 3 403.540134 1207.59857 0.31677 0.00012783 -1.3281 -0.00053596 -1.0114 -0.00040813 403.87444012307304 54.047 0.30033 53.58 53.446 53.746 -0.46664 31 14 3 0 0 0 0.30202 1 29278 29278 12.175 6.3066 1 3236800 54127 4293 36438 37257 62884 62884 0.003076288749298328 RPRDPTPSF 9 Unmodified _RPRDPTPSF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1898803710938 3 358.189324 1071.54614 1.1777 0.00042183 -0.12755 -4.5686E-05 1.0501 0.00037615 358.18913899273645 28.108 0.3717 24.96 24.788 25.16 -3.1482 31 19 2 0 0 0 0.1773 1 15613 15613 18.373 7.5736 1 15247000 54128 10837 36439 37258 62885 62885 0.01323090531991511 RPRDPTPSF 9 Unmodified _RPRDPTPSF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MSMS AL20221201_MKP_PDAC_01 4 536.7804565429688 2 536.780348 1071.54614 NaN NaN NaN NaN NaN NaN NaN 28.09 1 24.942 24.442 25.442 -3.1482 0 0 0 0.098496 1 15630 15630 43.772 25.626 1 54129 10837 36439 37258 62886 62886 0.01323090531991511 RPRDTRRISL 10 Unmodified _RPRDTRRISL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.9232482910156 3 423.92146 1268.74255 1.0471 0.0004439 0.53295 0.00022593 1.5801 0.00066983 423.92188656055043 18.811 0.26299 16.19 16.014 16.277 -2.6215 33 19 2 0 0 0 0.65471 1 9880 9880 7.9454 2.8979 1 7403700 54130 2128 36440 37259 62887 62887 0.11892895425762617 RPREAEVRF 9 Unmodified _RPREAEVRF_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2156982421875 3 387.215873 1158.62579 -0.4328 -0.00016759 -0.22753 -8.8104E-05 -0.66033 -0.00025569 387.2157455938815 21.137 0.2344 21.137 21.042 21.277 0 126 38 4 0 0 0 0.45698 1 10709 10709 9.7643 4.8672 1 18181000 54131 4713 36441 37260 62888 62888 0.05282157205988369 RPREAEVRF 9 Unmodified _RPREAEVRF_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2157897949219 3 387.215873 1158.62579 -0.2869 -0.00011109 -1.814 -0.0007024 -2.1009 -0.0008135 387.2150916317463 21.039 0.39367 21.068 20.761 21.154 0.028357 44 18 3 0 0 0 0.14859 1 10665 10665 28.234 9.5124 1 11008000 54132 4713 36441 37260 62889 62889 0.05282157205988369 RPREDAVKY 9 Unmodified _RPREDAVKY_ 0 0 0 nc|ENSG00000115183|Q9C0D5-2|TANC1;ENSG00000115183|ENST00000263635|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 nc|ENSG00000115183|Q9C0D5-2|TANC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5405578613281 3 378.540245 1132.59891 0.64842 0.00024545 -2.2332 -0.00084536 -1.5848 -0.0005999 378.5393764656601 16.168 0.25663 13.611 13.472 13.729 -2.557 92 41 3 0 0 0 0.38785 1 8415 8415 8.9762 3.2444 1 7555300 54133 3093 36442 37261 62890 62890 0.03791048594803215 RPREGPQH 8 Unmodified _RPREGPQH_ 0 0 0 REV__ENSG00000161647|ENST00000398389|MPP3 REV__ENSG00000161647|ENST00000398389|MPP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.231201171875 2 488.757207 975.499861 -0.29884 -0.00014606 2.8956 0.0014152 2.5967 0.0012692 488.75865782292726 20.254 0.18409 20.254 20.158 20.342 0 16 11 2 0 0 0 8.7369 1 10228 10228 4.3292 2.0265 1 276720 + 54134 21603 36443 37262 62891 62891 0.011130704205697839 RPREGSRFL 9 Unmodified _RPREGSRFL_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2125549316406 3 373.212351 1116.61522 0.058939 2.1997E-05 0.55023 0.00020535 0.60917 0.00022735 373.212483664974 19.083 0.22641 19.091 18.971 19.197 0.0078487 30 12 3 0 0 0 0.21643 1 9671 9671 15.739 4.8397 1 9032500 54135 720 36444 37263 62892 62892 0.06158174551569573 RPREGSRFL 9 Unmodified _RPREGSRFL_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.212351 1116.61522 -0.54528 -0.0002035 0.76894 0.00028698 0.22367 8.3475E-05 373.21232297375565 19.082 0.075172 19.105 19.05 19.125 0.023106 0.0072283 0.00020151 NaN 15.739 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 338750 54136 720 36444 37263 0.06158174551569573 RPREGSRFLVF 11 Unmodified _RPREGSRFLVF_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2582397460938 3 455.257961 1362.75205 1.1351 0.00051677 -0.74516 -0.00033924 0.38996 0.00017753 455.2576518162131 46.298 0.3712 46.264 46.081 46.452 -0.033421 57 17 4 0 0 0 0.34849 2 24860 24860;24971 24.229 13.913 1 66532000 54137 720 36445 37264 62893;62894 62893 0.08518663711265617 RPREGSRFLVF 11 Unmodified _RPREGSRFLVF_ 0 0 0 ENSG00000050327|ENST00000056217|ARHGEF5;nc|ENSG00000050327|Q12774-2|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 ENSG00000050327|ENST00000056217|ARHGEF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.5931701660156 3 455.257961 1362.75205 1.3341 0.00060738 0.0062903 2.8637E-06 1.3404 0.00061024 455.2579457119996 90.85 0.41908 84.674 84.505 84.925 -6.1757 84 24 4 0 0 0 0.14513 2 59950 59950;60077 37.251 18.911 1 93818000 54138 720 36445 37264 62895;62896 62895 0.08518663711265617 RPREKKLGL 9 Unmodified _RPREKKLGL_ 0 0 0 ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1 ENST00000466152.5_1_20:49557422-49575060:-|nuORF ENST00000466152.5_1_20:49557422-49575060:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2367858886719 3 366.236497 1095.68766 0.80161 0.00029358 0.35565 0.00013025 1.1573 0.00042383 366.23656450935897 15.657 0.33565 13.13 12.999 13.334 -2.5273 221 84 4 0 0 0 0.18144 2 8113 8009;8113 24.991 3.2245 1 39198000 54139 249 36446 37265 62897;62898 62898 0.14364508625135386 RPREQDRDVQL 11 Unmodified _RPREQDRDVQL_ 0 0 0 nc|ENSG00000149743|Q86TN4-3|TRPT1;ENST00000536234.1_1_11:63992965-63993695:-|nuORF;ENSG00000149743|ENST00000317459|TRPT1;nc|ENSG00000149743|Q86TN4-4|TRPT1 nc|ENSG00000149743|Q86TN4-3|TRPT1 nc|ENSG00000149743|Q86TN4-3|TRPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2512817382812 3 471.251534 1410.73277 0.97825 0.000461 -0.55497 -0.00026153 0.42328 0.00019947 471.25108545131235 19.598 0.20089 16.942 16.857 17.058 -2.6564 28 15 3 0 0 0 0.65096 1 10394 10394 8.7518 1.2747 1 3745600 54140 16262 36447 37266 62899 62899 0.04383662629720675 RPREQNGAIYL 11 Unmodified _RPREQNGAIYL_ 0 0 0 nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1 nc|ENSG00000153029|Q95460-2|MR1 nc|ENSG00000153029|Q95460-2|MR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.5737609863281 3 439.573837 1315.69968 -0.27748 -0.00012197 0.459 0.00020177 0.18153 7.9795E-05 439.57384415229814 32.959 0.2687 32.8 32.645 32.913 -0.15918 15 10 2 0 0 0 0.66968 1 17178 17178 5.8681 2.2755 1 1740800 54141 6230 36448 37267 62900 62900 0.054460805776670895 RPREQNGAIYL 11 Unmodified _RPREQNGAIYL_ 0 0 0 nc|ENSG00000153029|Q95460-2|MR1;ENSG00000153029|ENST00000367580|MR1;ENST00000438435.6_1_1:181006220-181024398:+|nuORF;nc|ENSG00000153029|Q95460-3|MR1 nc|ENSG00000153029|Q95460-2|MR1 nc|ENSG00000153029|Q95460-2|MR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 658.8574829101562 2 658.857118 1315.69968 0.85448 0.00056298 -0.39601 -0.00026091 0.45847 0.00030207 658.8568015677995 35.721 0.31236 31.528 31.382 31.694 -4.1928 32 19 2 0 0 0 0.14665 1 20753 20753 37.075 21.227 1 8262700 54142 6230 36448 37267 62901 62901 0.054460805776670895 RPRETRVIAV 10 Unmodified _RPRETRVIAV_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.911865234375 3 399.578923 1195.71494 -0.033723 -1.3475E-05 -0.41266 -0.00016489 -0.44638 -0.00017836 399.5788728364552 21.426 0.23112 21.44 21.315 21.546 0.013796 115 37 4 0 0 0 0.66229 1 10913 10913 6.6235 3.5512 1 29360000 54143 8844 36449 37268 62902 62902 0.12490992165521675 RPRETRVIAV 10 Unmodified _RPRETRVIAV_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5794982910156 3 399.578923 1195.71494 0.36135 0.00014439 0.070745 2.8268E-05 0.4321 0.00017266 399.57889225575684 24.327 0.49548 21.5 21.265 21.761 -2.8273 87 27 4 0 0 0 0.38225 1 13154 13154 24.957 14.642 1 133110000 54144 8844 36449 37268 62903 62903 0.12490992165521675 RPRETRVIAV 10 Unmodified _RPRETRVIAV_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.86474609375 2 598.864746 1195.71494 -0.30627 -0.00018341 0.081042 4.8533E-05 -0.22523 -0.00013488 598.8648897896364 24.318 0.22326 21.491 21.374 21.597 -2.8273 19 12 2 0 0 0 0.55245 1 13238 13238 13.615 1.3742 1 4625600 54145 8844 36449 37268 62904 62904 0.12490992165521675 RPRETRVIAVL 11 Unmodified _RPRETRVIAVL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.608154296875 3 437.273611 1308.799 0.26229 0.00011469 -0.12737 -5.5694E-05 0.13492 5.8998E-05 437.27362747872934 34.818 0.36949 34.846 34.713 35.082 0.027401 61 16 5 0 0 0 0.58245 2 18332 18332;18443 12.228 3.4758 1 80091000 54146 8844 36450 37269 62905;62906 62905 0.1569552326241137 RPRETRVIAVL 11 Unmodified _RPRETRVIAVL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.2738342285156 3 437.273611 1308.799 0.81334 0.00035565 0.18993 8.3053E-05 1.0033 0.00043871 437.27382538024534 38.962 0.34285 34.511 34.316 34.659 -4.4509 47 21 3 0 0 0 0.31264 2 23123 22990;23123 26.121 11.283 1 19728000 54147 8844 36450 37269 62907;62908 62908 0.1569552326241137 RPRETRVIAVL 11 Unmodified _RPRETRVIAVL_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.2733154296875 3 437.273611 1308.799 0.77872 0.00034052 -0.20505 -8.9662E-05 0.57367 0.00025085 437.2734462339252 82.722 0.99901 76.546 76.066 77.065 -6.1757 142 55 3 0 0 0 0.17638 4 54127 54127;54251;54387;54531 33.632 18.794 1 32414000 54148 8844 36450 37269 62909;62910;62911;62912 62909 0.1569552326241137 RPRFEPVHF 9 Unmodified _RPRFEPVHF_ 0 0 0 ENSG00000186416|ENST00000688521|NKRF;nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF ENSG00000186416|ENST00000688521|NKRF ENSG00000186416|ENST00000688521|NKRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8843383789062 3 395.548964 1183.62506 -0.37715 -0.00014918 1.5257 0.00060348 1.1485 0.0004543 395.54980787719336 36.523 0.24767 36.544 36.414 36.661 0.021545 25 11 3 0 0 0 0.044011 1 19347 19347 37.075 20.926 1 8068400 54149 9474 36451 37270 62913 62913 0.04059362556927226 RPRFEPVHF 9 Unmodified _RPRFEPVHF_ 0 0 0 ENSG00000186416|ENST00000688521|NKRF;nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF ENSG00000186416|ENST00000688521|NKRF ENSG00000186416|ENST00000688521|NKRF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 395.548964 1183.62506 1.2435 0.00049186 0.63531 0.0002513 1.8788 0.00074316 395.549104413244 40.729 0.27538 36.2 36.097 36.373 -4.5294 -0.17222 -0.00043944 NaN 37.075 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 7232700 54150 9474 36451 37270 0.04059362556927226 RPRFPVLL 8 Unmodified _RPRFPVLL_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000463920.5_1_1:154574717-154600435:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3181457519531 2 499.318912 996.62327 0.51805 0.00025867 -0.10899 -5.4423E-05 0.40906 0.00020425 499.3185807543896 93.477 0.34106 87.302 87.163 87.504 -6.1757 35 21 2 0 0 0 0.24071 2 61820 61820;61958 63.563 20.595 1 16372000 54151 6746 36452 37271 62914;62915 62914 0.1248235353898508 RPRFTQPSKM 10 Unmodified _RPRFTQPSKM_ 0 0 0 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 ENSG00000127418|ENST00000510644|FGFRL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5612487792969 3 416.560763 1246.66046 1.4431 0.00060112 -0.33673 -0.00014027 1.1063 0.00046085 416.5606407355262 21.041 0.22817 18.348 18.205 18.433 -2.693 29 12 3 0 0 0 0.50362 1 11190 11190 10.315 3.6849 1 4110700 54152 4006 36453 37272 62916 62916 0.046996570224109746 RPRGFAYVQF 10 Unmodified _RPRGFAYVQF_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2237548828125 3 414.224368 1239.65128 0.38385 0.000159 0.040926 1.6952E-05 0.42477 0.00017595 414.2243538848906 50.814 0.31382 50.761 50.628 50.942 -0.053871 41 15 4 0 0 0 0.44373 1 27464 27464 12.175 3.1985 1 10371000 54153 6334 36454 37273 62917 62917 0.041036317283897006 RPRGFAYVQF 10 Unmodified _RPRGFAYVQF_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8328857421875 2 620.832914 1239.65128 0.75665 0.00046975 -0.74743 -0.00046403 0.0092236 5.7263E-06 620.8325098628603 50.81 0.23222 50.756 50.669 50.901 -0.053871 17 11 2 0 0 0 0.085354 1 27490 27490 49.933 23.049 1 2590100 54154 6334 36454 37273 62918 62918 0.041036317283897006 RPRGFGFITF 10 Unmodified _RPRGFGFITF_ 0 0 0 nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8895874023438 3 399.889097 1196.64546 1.4196 0.00056768 0.13361 5.343E-05 1.5532 0.00062111 399.88928161814005 96.726 0.27077 90.551 90.422 90.693 -6.1757 47 15 4 0 0 0 0.11755 2 64048 64048;64170 30.703 7.833 1 53749000 54155 16048 36455 37274 62919;62920 62919 0.055005332167411325 RPRGFGFITF 10 Unmodified _RPRGFGFITF_ 0 0 0 nc|ENSG00000071626|Q96EP5-2|DAZAP1;ENSG00000071626|ENST00000233078|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 nc|ENSG00000071626|Q96EP5-2|DAZAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3285522460938 2 599.330008 1196.64546 0.71224 0.00042687 0.40671 0.00024375 1.1189 0.00067062 599.3301767071259 96.717 0.30399 90.541 90.404 90.708 -6.1757 46 17 4 0 0 0 0.20962 1 64058 64058 32.786 0 1 55165000 54156 16048 36455 37274 62921 62921 0.055005332167411325 RPRGHRAMHAP 11 Unmodified _RPRGHRAMHAP_ 0 0 0 ENST00000256495.3_1_3:5021183-5021234:+|nuORF ENST00000256495.3_1_3:5021183-5021234:+|nuORF ENST00000256495.3_1_3:5021183-5021234:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1285.882690429688 1 1285.6807 1284.67343 0.45754 0.00058826 0.10682 0.00013734 0.56437 0.0007256 1286.6811666612102 64.106 0.10168 63.62 63.553 63.654 -0.48512 6 4 2 0 0 0 0.7453 1 34987 34987 0 0 1 1118100 54157 11179 36456 37275 62922 62922 0.042475329252056326 RPRGKRSK 8 Unmodified _RPRGKRSK_ 0 0 0 REV__nc|ENSG00000156531|Q8IWS0-4|PHF6 REV__nc|ENSG00000156531|Q8IWS0-4|PHF6 MSMS AL20221201_MKP_PDAC_01 4 492.9691467285156 2 492.812316 983.61008 NaN NaN NaN NaN NaN NaN NaN 109.52 1 103.34 102.84 103.84 -6.1757 0 0 0 0.97444 1 73138 73138 0.79363 0 1 + 54158 21336 36457 37276 62923 62923 0.11761915479598883 RPRGLALVL 9 Unmodified _RPRGLALVL_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.8306884765625 2 497.829643 993.644734 0.50267 0.00025024 0.37224 0.00018531 0.87491 0.00043556 497.8297539605686 52.075 0.333 52.016 51.835 52.168 -0.058918 35 15 3 0 0 0 0.031062 1 28162 28162 54.774 7.8527 1 14321000 54159 2403 36458 37277 62924 62924 0.14765738567689368 RPRGLALVL 9 Unmodified _RPRGLALVL_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8298034667969 2 497.829643 993.644734 1.0449 0.00052018 0.29736 0.00014804 1.3423 0.00066821 497.8296455101358 91.059 0.86386 84.883 84.355 85.219 -6.1757 127 50 3 0 0 0 0.042911 4 59946 59946;60079;60211;60340 48.346 7.8973 1 77699000 54160 2403 36458 37277 62925;62926;62927;62928 62925 0.14765738567689368 RPRGLRPLEL 10 Unmodified _RPRGLRPLEL_ 0 0 0 ENSG00000168005|ENST00000294244|SPINDOC ENSG00000168005|ENST00000294244|SPINDOC ENSG00000168005|ENST00000294244|SPINDOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.9198608398438 3 402.919168 1205.73567 0.3155 0.00012712 -0.10197 -4.1087E-05 0.21352 8.6032E-05 402.91926468815416 85.284 1.0891 79.108 78.657 79.746 -6.1757 120 65 2 0 0 0 0.47059 1 55969 55969 17.863 3.645 1 40500000 54161 7701 36459 37278 62929 62929 0.1410358254518087 RPRGPPPPP 9 Unmodified _RPRGPPPPP_ 0 0 0 ENSG00000087365|ENST00000322535|SF3B2;ENST00000525207.1_1_11:65824747-65825957:+|nuORF ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7835388183594 2 485.782693 969.550834 0.61213 0.00029736 0.34337 0.0001668 0.9555 0.00046416 485.7828459681873 17.998 0.27276 15.412 15.277 15.55 -2.5866 29 18 2 0 0 0 0.026094 1 9412 9412 57.471 0 1 4397600 54162 1469 36460 37279 62930 62930 0.06484019465415258 RPRGPVIDFL 10 Unmodified _RPRGPVIDFL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;ENST00000464234.5_1_3:195474049-195480138:-|nuORF ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3443603515625 2 585.343115 1168.67168 0.58469 0.00034224 2.1253 0.001244 2.71 0.0015863 585.344145953795 59.505 0.2282 59.452 59.346 59.574 -0.053059 23 11 3 0 0 0 0.42143 1 32424 32424 20.415 0 1 3761800 54163 5669 36461 37280 62931 62931 0.09408802388225013 RPRGPVIDFL 10 Unmodified _RPRGPVIDFL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4;ENST00000464234.5_1_3:195474049-195480138:-|nuORF ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.8439331054688 2 585.343115 1168.67168 1.1386 0.00066645 -1.3736 -0.00080403 -0.23504 -0.00013758 585.3424347976351 91.916 0.20509 85.74 85.648 85.853 -6.1757 17 11 2 0 0 0 0.17714 1 60760 60760 36.506 12.486 1 6529600 54164 5669 36461 37280 62932 62932 0.09408802388225013 RPRGRPRKWWL 11 Unmodified _RPRGRPRKWWL_ 0 0 0 nc|ENSG00000149948|P52926-4|HMGA2 nc|ENSG00000149948|P52926-4|HMGA2 nc|ENSG00000149948|P52926-4|HMGA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 754.4473266601562 2 754.447103 1506.87965 NaN NaN NaN NaN NaN NaN NaN 15.287 1 15.293 14.793 15.793 0.0057774 0 0 0 0.9435 1 7612 7612 0 0 1 54165 16264 36462 37281 62933 62933 0.14648849095965488 RPRGSAYSCL 10 Unmodified _RPRGSAYSCL_ 0 0 0 REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2798461914062 2 555.279657 1108.54476 0.7889 0.00043806 -0.43368 -0.00024081 0.35522 0.00019724 555.2794868591268 82.812 0.90948 76.636 76.215 77.125 -6.1757 119 51 3 0 0 0 0.46514 2 54389 54389;54533 18.146 1.9972 1 13024000 + 54166 24734 36463 37282 62934;62935 62934 -0.005168668284113664 RPRGSAYSCL 10 Unmodified _RPRGSAYSCL_ 0 0 0 REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF REV__ENST00000216129.6_1_22:43563456-43563771:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2793579101562 2 555.279657 1108.54476 1.2696 0.00070499 -1.006 -0.00055861 0.26362 0.00014638 555.2789682813041 86.713 0.938 80.537 79.957 80.895 -6.1757 88 50 2 0 0 0 0.35903 2 56955 56955;57210 24.021 2.4836 1 19854000 + 54167 24734 36463 37282 62936;62937 62936 -0.005168668284113664 RPRGSQSLL 9 Unmodified _RPRGSQSLL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2962951660156 2 507.296165 1012.57778 0.30952 0.00015702 -1.0455 -0.00053037 -0.73597 -0.00037336 507.29557761922706 21.466 0.20667 21.48 21.402 21.609 0.013796 68 32 3 0 0 0 0.5029 1 10971 10971 7.2892 7.2892 1 5603700 54168 901 36464 37283 62938 62938 0.07199083285945562 RPRHLRDQADF 11 Unmodified _RPRHLRDQADF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.916259765625 3 470.916486 1409.72763 0.51582 0.00024291 0.73294 0.00034515 1.2488 0.00058806 470.9166678966465 17.998 0.2429 15.412 15.307 15.55 -2.5866 35 16 3 0 0 0 0.3535 1 9428 9428 23.964 11.108 1 9187900 54169 2308 36465 37284 62939 62939 0.0391540355772122 RPRHLRDQADF 11 Unmodified _RPRHLRDQADF_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.6900939941406 4 353.439184 1409.72763 1.2845 0.00045398 0.48795 0.00017246 1.7724 0.00062645 353.43945868690747 17.993 0.23324 15.406 15.292 15.525 -2.5866 28 14 3 0 0 0 0.65096 1 9445 9445 8.7518 5.6795 1 3770400 54170 2308 36465 37284 62940 62940 0.0391540355772122 RPRHQGVMV 9 Unmodified _RPRHQGVMV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5346374511719 3 360.534549 1078.58182 0.83629 0.00030151 -0.56319 -0.00020305 0.2731 9.8462E-05 360.53442480714745 16.028 0.48213 13.471 13.298 13.78 -2.557 342 87 5 0 0 0 0.16226 1 8287 8287 19.362 10.386 1 333890000 54171 1163;13679;5538 36466 37285 62941 62941 0.04566849508000814 RPRHQGVMV 9 Unmodified _RPRHQGVMV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.29833984375 2 540.298185 1078.58182 0.024076 1.3008E-05 -0.71588 -0.00038679 -0.6918 -0.00037378 540.2979811708196 16.027 0.28993 13.47 13.343 13.633 -2.557 153 54 4 0 0 0 0.12424 1 8309 8309 30.637 17.129 1 28268000 54172 1163;13679;5538 36466 37285 62942 62942 0.04566849508000814 RPRHQGVMVGM 11 Unmodified _RPRHQGVMVGM_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2216186523438 3 423.221865 1266.64376 0.47282 0.00020011 0.2609 0.00011042 0.73372 0.00031053 423.2222273041204 24.676 0.49453 21.793 21.541 22.036 -2.8831 68 28 3 0 0 0 0.12183 2 13367 13367;13471 25.997 21.591 1 43045000 54173 1163;13679;5538 36467 37286 62943;62944 62943 0.02110832864832446 RPRIPRELL 9 Unmodified _RPRIPRELL_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;ENST00000375173.1_1_9:100364753-100365089:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9118957519531 3 383.912013 1148.71421 -0.0097163 -3.7302E-06 1.0339 0.00039692 1.0242 0.00039319 383.9122790917042 34.887 0.34825 34.915 34.774 35.122 0.027401 30 15 2 0 0 0 0.2324 1 18378 18378 19.626 0 1 34209000 54174 4881 36468 37287 62945 62945 0.14580197516465887 RPRIPRELL 9 Unmodified _RPRIPRELL_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;ENST00000375173.1_1_9:100364753-100365089:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9126892089844 3 383.912013 1148.71421 0.65652 0.00025204 0.99237 0.00038098 1.6489 0.00063303 383.91223010837746 84.758 0.75254 78.582 78.068 78.82 -6.1757 72 43 2 0 0 0 0.07087 2 55646 55646;55791 30.703 14.138 1 27337000 54175 4881 36468 37287 62946;62947 62946 0.14580197516465887 RPRISTSTL 9 Unmodified _RPRISTSTL_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.804443359375 2 515.803823 1029.59309 0.33854 0.00017462 0.31265 0.00016127 0.6512 0.00033589 515.8039148010942 24.332 0.17202 24.353 24.265 24.437 0.021185 11 6 2 0 0 0 0.46501 1 12555 12555 9.3831 2.0939 1 6210900 54176 7575 36469 37288 62948 62948 0.07947950083121214 RPRISTSTL 9 Unmodified _RPRISTSTL_ 0 0 0 nc|ENSG00000167113|Q9Y3A0-2|COQ4;ENSG00000167113|ENST00000300452|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 nc|ENSG00000167113|Q9Y3A0-2|COQ4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8043823242188 2 515.803823 1029.59309 0.39409 0.00020328 -0.15711 -8.1036E-05 0.23699 0.00012224 515.8037838734183 27.691 0.33252 24.654 24.435 24.768 -3.0365 30 16 2 0 0 0 0.46501 1 15419 15419 9.3831 0 1 19545000 54177 7575 36469 37288 62949 62949 0.07947950083121214 RPRKAFLLL 9 Unmodified _RPRKAFLLL_ 0 0 0 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.913818359375 3 371.913354 1112.71823 1.8483 0.00068741 -0.2245 -8.3494E-05 1.6238 0.00060391 371.91328477480187 96.77 0.49096 90.594 90.37 90.861 -6.1757 46 28 2 0 0 0 0.32235 1 64228 64228 16.149 0 1 13034000 54178 6402 36470 37289 62950 62950 0.16638287010187014 RPRKAFLLLL 10 Unmodified _RPRKAFLLLL_ 0 0 0 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.6087341308594 3 409.608042 1225.8023 0.56145 0.00022998 0.7907 0.00032388 1.3522 0.00055385 409.60834450481616 99.69 0.18417 93.515 93.416 93.6 -6.1757 29 11 3 0 0 0 0.38225 1 66428 66428 22.658 0 1 92765000 54179 6402 36471 37290 62951 62951 0.19842818107099447 RPRKDLVETL 10 Unmodified _RPRKDLVETL_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.9141235351562 3 409.5787 1225.71427 NaN NaN NaN NaN NaN NaN NaN 27.691 1 27.645 27.145 28.145 -0.046408 0 0 0 0.75596 1 14277 14277 14.218 6.2728 1 54180 412 36472 37291 62952 62952 0.11044152725798995 RPRKDLVETLL 11 Unmodified _RPRKDLVETLL_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.2733764648438 3 447.273388 1338.79833 0.63823 0.00028546 -0.92517 -0.0004138 -0.28694 -0.00012834 447.27308330539 48.769 0.256 48.726 48.591 48.847 -0.04369 24 12 3 0 0 0 0.65096 1 26356 26356 8.7518 4.0359 1 5329800 54181 412 36473 37292 62953 62953 0.14248683822711428 RPRKDLVETLL 11 Unmodified _RPRKDLVETLL_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.2734069824219 3 447.273388 1338.79833 1.2712 0.00056856 -0.62989 -0.00028173 0.64127 0.00028682 447.2732066774177 92.012 0.22759 85.836 85.74 85.967 -6.1757 19 13 2 0 0 0 0.55668 1 60843 60843 13.535 0.67899 1 6851600 54182 412 36473 37292 62954 62954 0.14248683822711428 RPRKDLVETLL 11 Unmodified _RPRKDLVETLL_ 0 0 0 ENSG00000010072|ENST00000295050|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN ENSG00000010072|ENST00000295050|SPRTN ENSG00000010072|ENST00000295050|SPRTN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 447.273388 1338.79833 0.37068 0.00016579 0.79421 0.00035523 1.1649 0.00052102 447.2734119352711 49.1 0.14519 48.728 48.654 48.799 -0.37172 0.001229 0.0019446 NaN 8.7518 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 911820 54183 412 36473 37292 0.14248683822711428 RPRKPTLQP 9 Unmodified _RPRKPTLQP_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8930969238281 3 364.89273 1091.65636 0.91946 0.00033551 0.052238 1.9061E-05 0.9717 0.00035457 364.89268336296794 16.897 0.36493 14.34 14.133 14.498 -2.557 134 63 3 0 0 0 0.58499 1 8669 8669 2.2828 0 1 12317000 54184 10887 36474 37293 62955 62955 0.11419935591038666 RPRKTGHALF 10 Unmodified _RPRKTGHALF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9005126953125 3 394.899996 1181.67816 0.64308 0.00025395 -0.56561 -0.00022336 0.077468 3.0592E-05 394.89988469930705 17.482 0.26929 14.895 14.775 15.044 -2.5866 131 53 3 0 0 0 0.48629 1 9111 9111 17.049 2.0914 1 16515000 54185 8124 36475 37294 62956 62956 0.09458740339596261 RPRKTGHALFL 11 Unmodified _RPRKTGHALFL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5941772460938 3 432.594684 1294.76222 0.7365 0.00031861 -0.88823 -0.00038425 -0.15173 -6.564E-05 432.59428308828615 28.339 0.26401 25.191 25.059 25.323 -3.1482 20 13 2 0 0 0 0.48742 1 15837 15837 17.049 7.2843 1 7480900 54186 8124 36476 37295 62957 62957 0.12663271436508694 RPRKTGHALFL 11 Unmodified _RPRKTGHALFL_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5946655273438 3 432.594684 1294.76222 0.87282 0.00037758 -0.19394 -8.3895E-05 0.67888 0.00029368 432.5946590033666 90.308 0.38928 84.133 83.951 84.34 -6.1757 53 22 3 0 0 0 0.47711 2 59579 59579;59718 17.572 17.572 1 22977000 54187 8124 36476 37295 62958;62959 62958 0.12663271436508694 RPRKVQVAAL 10 Unmodified _RPRKVQVAAL_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.9117126464844 3 379.912013 1136.71421 0.66991 0.00025451 -0.072064 -2.7378E-05 0.59784 0.00022713 379.91195481045645 23.802 0.36821 20.974 20.809 21.178 -2.8273 38 22 2 0 0 0 0.62068 1 12831 12831 12.873 8.1567 1 6628900 54188 3414 36477 37296 62960 62960 0.151321975164592 RPRLALPDPA 10 Unmodified _RPRLALPDPA_ 0 0 0 ENST00000424722.5_2_2:191874700-191878875:-|nuORF;ENST00000361099.7_1_2:191878317-191878875:-|nuORF ENST00000424722.5_2_2:191874700-191878875:-|nuORF ENST00000424722.5_2_2:191874700-191878875:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.327880859375 2 553.327465 1104.64038 0.38498 0.00021302 0.37235 0.00020603 0.75733 0.00041905 553.3275875214572 26.402 0.42999 23.451 23.244 23.674 -2.9511 41 22 3 0 0 0 0.6067 1 14668 14668 10.8 1.2555 1 5405200 54189 12175 36478 37297 62961 62961 0.09224229354117597 RPRLGDLIEI 10 Unmodified _RPRLGDLIEI_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5717468261719 3 394.571545 1180.69281 -0.050247 -1.9826E-05 0.26972 0.00010643 0.21948 8.66E-05 394.5717372053071 60.58 0.32248 60.09 59.887 60.21 -0.48932 21 15 2 0 0 0 0.62665 2 32946 32946;33047 9.7643 2.2872 1 2490700 54190 4509 36479 37298 62962;62963 62962 0.10968767697090698 RPRLGDLIEI 10 Unmodified _RPRLGDLIEI_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 ENSG00000133328|ENST00000255695|PLAAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.57177734375 3 394.571545 1180.69281 1.397 0.0005512 -0.28806 -0.00011366 1.1089 0.00043754 394.57121431153035 94.502 0.22962 88.326 88.233 88.463 -6.1757 31 12 3 0 0 0 0.62665 1 62599 62599 9.7643 2.2872 1 16525000 54191 4509 36479 37298 62964 62964 0.10968767697090698 RPRLGRHRL 9 Unmodified _RPRLGRHRL_ 0 0 0 REV__ENSG00000139540|ENST00000454355|SLC39A5 REV__ENSG00000139540|ENST00000454355|SLC39A5 MSMS AL20221201_MKP_PDAC_01 4 580.8660888671875 2 580.865415 1159.71628 NaN NaN NaN NaN NaN NaN NaN 107.77 1 101.59 101.09 102.09 -6.1757 0 0 0 0.85798 1 72058 72058 0.52476 0 1 + 54192 20413 36480 37299 62965 62965 0.14280671044912197 RPRLKISPFK 10 Unmodified _RPRLKISPFK_ 0 0 0 REV__ENST00000508686.1_3_5:72861812-72861932:+|nuORF REV__ENST00000508686.1_3_5:72861812-72861932:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 621.395751953125 2 621.395682 1240.77681 NaN NaN NaN NaN NaN NaN NaN 106.93 1 100.76 100.26 101.26 -6.1757 0 0 0 1.0024 1 71552 71552 0.40072 0.050084 1 + 54193 28119 36481 37300 62966 62966 0.16605343584615184 RPRLKLRDAI 10 Unmodified _RPRLKLRDAI_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2654724121094 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 5.7664 1 5.6889 5.1889 6.1889 -0.07749 0 0 0 1.0019 1 2846 2846 0.15932 0 1 + 54194 18580 36482 37301 62967 62967 0.16895557953557727 RPRLNAILF 9 Unmodified _RPRLNAILF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3406372070312 2 550.340375 1098.6662 0.38119 0.00020978 0.046461 2.557E-05 0.42765 0.00023535 550.3404300139434 93.499 0.29353 87.323 87.193 87.486 -6.1757 44 18 3 0 0 0 0.11784 1 61871 61871 42.095 6.0504 1 44580000 54195 4334 36483 37302 62968 62968 0.12081123596408361 RPRLNAILF 9 Unmodified _RPRLNAILF_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2300720214844 3 367.229342 1098.6662 1.0215 0.00037514 0.46371 0.00017029 1.4852 0.00054543 367.2296973040611 93.501 0.31804 87.325 87.133 87.451 -6.1757 34 21 2 0 0 0 0.1685 1 61910 61910 26.268 10.119 1 21749000 54196 4334 36483 37302 62969 62969 0.12081123596408361 RPRLPRKLKMA 11 Unmodified _RPRLPRKLKMA_ 0 0 0 ENSG00000169592|ENST00000563197|INO80E ENSG00000169592|ENST00000563197|INO80E ENSG00000169592|ENST00000563197|INO80E MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2931518554688 3 455.958969 1364.85508 0.24231 0.00011048 0.53592 0.00024436 0.77823 0.00035484 456.2931032419244 16.413 0.5555 13.856 13.519 14.075 -2.557 124 83 2 0 0 0 0.74046 2 8331 8331;8431 0.45452 0 1 3643600 54197 7887 36484 37303 62970;62971 62970 0.18724452898231903 RPRLQHSFSF 10 Unmodified _RPRLQHSFSF_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5636901855469 3 425.563273 1273.66799 0.034971 1.4882E-05 1.0067 0.00042843 1.0417 0.00044331 425.56370028339785 33.191 0.26832 33.22 33.093 33.361 0.028934 35 11 4 0 0 0 0.13391 1 17443 17443 35.612 22.756 1 13261000 54198 9393 36485 37304 62972 62972 0.0421013261434382 RPRLQHSFSF 10 Unmodified _RPRLQHSFSF_ 0 0 0 ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1 ENST00000555997.1_1_14:69256252-69257717:-|nuORF ENST00000555997.1_1_14:69256252-69257717:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.5633239746094 3 425.563273 1273.66799 1.0222 0.00043502 -0.33676 -0.00014331 0.68545 0.0002917 425.5631606205036 80.35 0.64594 74.175 73.762 74.408 -6.1757 53 37 2 0 0 0 0.051223 2 52550 52550;52703 49.742 38.111 1 21267000 54199 9393 36485 37304 62973;62974 62973 0.0421013261434382 RPRLTSNEKL 10 Unmodified _RPRLTSNEKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2389831542969 3 405.238566 1212.69387 -0.13738 -5.5671E-05 0.26504 0.0001074 0.12766 5.1733E-05 405.23871807492014 18.324 0.18483 18.33 18.244 18.429 0.0060463 27 11 3 0 0 0 0.17714 1 9273 9273 31.636 17.418 1 58077000 54200 9854 36486 37305 62975 62975 0.09602982065962351 RPRLTSNEKL 10 Unmodified _RPRLTSNEKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2397766113281 3 405.238566 1212.69387 1.2473 0.00050546 -0.73109 -0.00029627 0.51623 0.00020919 405.2382024262252 20.175 0.56289 17.519 17.275 17.838 -2.6564 141 35 5 0 0 0 0.42143 1 10653 10653 17.863 4.3445 1 419900000 54201 9854 36486 37305 62976 62976 0.09602982065962351 RPRLTSNEKL 10 Unmodified _RPRLTSNEKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889791-118894106:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.354736328125 2 607.354211 1212.69387 0.84345 0.00051227 -0.83915 -0.00050966 0.0042988 2.6109E-06 607.3539070653425 20.177 0.3119 17.521 17.351 17.663 -2.6564 56 22 3 0 0 0 0.16005 1 10698 10698 38.615 13.624 1 12340000 54202 9854 36486 37305 62977 62977 0.09602982065962351 RPRLVFHTQL 10 Unmodified _RPRLVFHTQL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9194641113281 3 422.919168 1265.73567 0.94525 0.00039977 -0.2479 -0.00010484 0.69735 0.00029492 422.91914055465276 42.216 0.34525 37.531 37.364 37.709 -4.6846 42 21 3 0 0 0 0.43662 1 25553 25553 19.626 2.1833 1 20724000 54203 3686 36487 37306 62978 62978 0.11343582545168829 RPRLVFHTQL 10 Unmodified _RPRLVFHTQL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.91943359375 3 422.919168 1265.73567 0.3602 0.00015234 0.59544 0.00025182 0.95564 0.00040416 422.91945777513786 85.192 0.88033 79.016 78.582 79.462 -6.1757 142 53 3 0 0 0 0.1028 3 56153 55896;56025;56153 46.022 17.789 1 94376000 54204 3686 36487 37306 62979;62980;62981 62981 0.11343582545168829 RPRLVFHTQL 10 Unmodified _RPRLVFHTQL_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MSMS AL20221201_MKP_PDAC_01 4 633.8751831054688 2 633.875114 1265.73567 NaN NaN NaN NaN NaN NaN NaN 85.315 1 79.139 78.639 79.639 -6.1757 0 0 0 0.1585 1 56178 56178 53.404 37.255 1 54205 3686 36487 37306 62982 62982 0.11343582545168829 RPRLYIFMA 9 Unmodified _RPRLYIFMA_ 0 0 0 REV__ENSG00000182613|ENST00000641492|OR2V2 REV__ENSG00000182613|ENST00000641492|OR2V2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9050598144531 3 389.55495 1165.64302 0.28766 0.00011206 2.0327 0.00079186 2.3204 0.00090392 389.5554662943496 52.012 0.21094 51.953 51.896 52.107 -0.058918 13 9 2 0 0 0 0.21834 1 28214 28214 0.96228 0 1 834500 + 54206 23284 36488 37307 62983 62983 0.06682361487423805 RPRLYPSP 8 Unmodified _RPRLYPSP_ 0 0 0 REV__ENST00000568500.1_1_16:30709080-30709953:-|nuORF REV__ENST00000568500.1_1_16:30709080-30709953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.56201171875 1 985.557776 984.550499 0.048138 4.7442E-05 -1.0351 -0.0010201 -0.98695 -0.0009727 985.5567343262685 89.316 0.28448 89.316 89.186 89.471 0 28 13 3 0 0 0 0.80992 1 49444 49444 0.69038 0 1 1441100 + 54207 28944 36489 37308 62984 62984 0.05760599745553918 RPRMLITY 8 Unmodified _RPRMLITY_ 0 0 0 REV__ENSG00000280204|ENST00000641544|OR1S1 REV__ENSG00000280204|ENST00000641544|OR1S1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2992553710938 2 525.299862 1048.58517 NaN NaN NaN NaN NaN NaN NaN 85.457 1 85.457 84.957 85.957 0 0 0 0 0.97444 1 47358 47358 2.5775 0.51773 1 + 54208 24682 36490 37309 62985 62985 0.06282099562031362 RPRMNANSL 9 Unmodified _RPRMNANSL_ 0 0 0 ENSG00000008405|ENST00000008527|CRY1;ENST00000546722.1_1_12:107393683-107395617:-|nuORF;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.77978515625 2 529.779825 1057.5451 1.1786 0.00062439 -0.91218 -0.00048326 0.26639 0.00014113 529.7796857517717 21.017 0.2473 18.324 18.167 18.414 -2.693 33 13 3 0 0 0 0.23158 1 11177 11177 20.454 0 1 4509400 54209 390;3592 36491 37310 62986 62986 0.01862552891429914 RPRMNANSL 9 Unmodified _RPRMNANSL_ 0 0 0 ENSG00000008405|ENST00000008527|CRY1;ENST00000546722.1_1_12:107393683-107395617:-|nuORF;nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 ENSG00000008405|ENST00000008527|CRY1;nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5227355957031 3 353.522309 1057.5451 1.8743 0.0006626 -1.2346 -0.00043646 0.63967 0.00022614 353.5218600950451 20.97 0.52513 18.277 17.964 18.489 -2.693 60 31 3 0 0 0 0.031062 1 11217 11217 41.956 15.935 1 5528200 54210 390;3592 36491 37310 62987 62987 0.01862552891429914 RPRNALLLL 9 Unmodified _RPRNALLLL_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000575282.5_1_17:78187814-78194112:-|nuORF;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.9014892578125 3 355.901226 1064.68185 0.076517 2.7232E-05 0.60389 0.00021493 0.68041 0.00024216 355.9014352734656 55.131 0.27876 55.062 54.96 55.238 -0.068737 21 13 2 0 0 0 0.14602 1 29994 29994 20.415 3.8487 1 4044000 54211 8977 36492 37311 62988 62988 0.15209410113470767 RPRNALLLL 9 Unmodified _RPRNALLLL_ 0 0 0 ENSG00000181523|ENST00000326317|SGSH;ENST00000575282.5_1_17:78187814-78194112:-|nuORF;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF ENSG00000181523|ENST00000326317|SGSH ENSG00000181523|ENST00000326317|SGSH MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.9016723632812 3 355.901226 1064.68185 0.94149 0.00033508 0.25847 9.199E-05 1.2 0.00042707 355.9013383956377 93.035 0.29247 86.859 86.671 86.964 -6.1757 36 18 3 0 0 0 0.026094 2 61476 61476;61607 43.772 16.549 1 25195000 54212 8977 36492 37311 62989;62990 62989 0.15209410113470767 RPRNPAGRTGL 11 Unmodified _RPRNPAGRTGL_ 0 0 0 nc|ENSG00000170502|Q9BW91-2|NUDT9;ENSG00000170502|ENST00000302174|NUDT9 nc|ENSG00000170502|Q9BW91-2|NUDT9 nc|ENSG00000170502|Q9BW91-2|NUDT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8987731933594 3 398.898655 1193.67414 0.26853 0.00010711 -2.4091 -0.00096099 -2.1406 -0.00085387 398.89892836478896 16.184 0.31419 13.627 13.499 13.813 -2.557 102 47 3 0 0 0 0.51324 2 8306 8306;8393 12.929 2.7781 1 7651800 54213 7996 36493 37312 62991;62992 62991 0.08504650845884498 RPRNWSQCVEL 11 Carbamidomethyl (C) _RPRNWSQC(Carbamidomethyl (C))VEL_ RPRNWSQC(1)VEL RPRNWSQC(59)VEL 0 1 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 722.8607177734375 2 722.859335 1443.70412 0.50659 0.00036619 0.050762 3.6694E-05 0.55735 0.00040289 722.8594511812207 43.48 0.41175 38.715 38.607 39.019 -4.7648 57 25 3 0 0 0 0.018218 1 26440 26440 59.052 39.691 1 11994000 54214 601 36494 37313 62993 62993 41 1.2217288940519211E-05 RPRPAPPP 8 Unmodified _RPRPAPPP_ 0 0 0 ENST00000373896.7_2_9:123636327-123639570:-|nuORF ENST00000373896.7_2_9:123636327-123639570:-|nuORF ENST00000373896.7_2_9:123636327-123639570:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 444.2641906738281 2 444.264136 886.51372 NaN NaN NaN NaN NaN NaN NaN 15.382 1 12.855 12.355 13.355 -2.5273 0 0 0 0.93066 1 7887 7887 14.582 0 1 54215 12428 36495 37314 62994 62994 0.0659234791964991 RPRPGNILL 9 Unmodified _RPRPGNILL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.325439453125 2 518.324725 1034.6349 -0.20411 -0.0001058 0.80907 0.00041936 0.60496 0.00031357 518.3251552877638 36.833 0.424 36.854 36.684 37.108 0.021545 68 19 5 0 0 0 0.0095811 2 19479 19479;19588 81.613 24.142 1 68404000 54216 1899 36496 37315 62995;62996 62995 0.11896550562323682 RPRPGNILL 9 Unmodified _RPRPGNILL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3251342773438 2 518.324725 1034.6349 0.61708 0.00031985 0.1796 9.3092E-05 0.79668 0.00041294 518.324811089461 40.507 0.60281 35.978 35.672 36.275 -4.5294 115 38 4 0 0 0 0.031062 3 24286 24032;24153;24286 54.774 6.4277 1 185840000 54217 1899 36496 37315 62997;62998;62999 62999 0.11896550562323682 RPRPGNILLQL 11 Unmodified _RPRPGNILLQL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2666320800781 3 426.266456 1275.77754 0.64309 0.00027413 -0.45545 -0.00019414 0.18764 7.9986E-05 426.2662011269306 58.573 0.3099 58.512 58.333 58.643 -0.060719 42 15 4 0 0 0 0.57006 1 31859 31859 12.856 5.8189 1 12147000 54218 1899 36497 37316 63000 63000 0.1506813823370976 RPRPGNILLQL 11 Unmodified _RPRPGNILLQL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2664794921875 3 426.266456 1275.77754 1.0932 0.000466 -0.020264 -8.6378E-06 1.0729 0.00045736 426.26654996394996 92.277 0.65361 86.101 85.921 86.575 -6.1757 85 39 3 0 0 0 0.096911 3 61223 60971;61098;61223 42.835 21.036 1 33526000 54219 1899 36497 37316 63001;63002;63003 63003 0.1506813823370976 RPRPGNILLQL 11 Unmodified _RPRPGNILLQL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.8966674804688 2 638.896046 1275.77754 0.72813 0.0004652 -0.77341 -0.00049413 -0.045286 -2.8933E-05 638.8955766096805 92.286 0.57929 86.11 85.921 86.5 -6.1757 56 34 2 0 0 0 0.0065946 3 61101 60975;61101;61247 89.401 34.792 1 23318000 54220 1899 36497 37316 63004;63005;63006 63005 0.1506813823370976 RPRPHSAPSL 10 Unmodified _RPRPHSAPSL_ 0 0 0 ENST00000466860.5_1_1:12082310-12089454:+|nuORF;nc|ENSG00000116691|Q5JXC2-2|MIIP;ENSG00000116691|ENST00000235332|MIIP ENST00000466860.5_1_1:12082310-12089454:+|nuORF ENST00000466860.5_1_1:12082310-12089454:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2127990722656 3 373.212351 1116.61522 0.82605 0.00030829 -0.054571 -2.0367E-05 0.77148 0.00028793 373.21236424732683 16.912 0.23179 14.355 14.242 14.474 -2.557 79 39 3 0 0 0 0.42143 1 8773 8773 13.519 2.6197 1 11276000 54221 3244 36498 37317 63007 63007 0.06158174551569573 RPRPPITLL 9 Unmodified _RPRPPITLL_ 0 0 0 nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 nc|ENSG00000136715|Q9H0E3|SAP130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8423461914062 2 531.842751 1061.67095 1.3909 0.00073976 -0.51371 -0.00027321 0.87724 0.00046655 531.8425141412719 50.102 0.40454 50.053 49.846 50.25 -0.048828 58 19 4 0 0 0 0.15471 1 27033 27033 27.629 6.0918 1 14037000 54222 4847 36499 37318 63008 63008 0.14258007739181267 RPRPRHGPL 9 Unmodified _RPRPRHGPL_ 0 0 0 REV__ENST00000333554.4_9:40332483-40332909:+|nuORF REV__ENST00000333554.4_9:40332483-40332909:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5531005859375 3 362.552819 1084.63663 -0.57593 -0.0002088 -0.13906 -5.0417E-05 -0.71499 -0.00025922 362.5527177231663 16.771 0.074203 16.772 16.735 16.81 0.0010529 25 21 2 0 0 0 0.58865 1 8284 8284 1.0715 0 1 266340 + 54223 25623 36500 37319 63009 63009 0.09769604370922025 RPRPSEDTF 9 Unmodified _RPRPSEDTF_ 0 0 0 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.8735046386719 3 368.8526 1103.53597 1.749 0.00064511 0.41966 0.00015479 2.1686 0.0007999 368.85255362828246 20.472 0.27477 17.779 17.627 17.901 -2.693 18 13 2 0 0 0 0.209 1 10919 10919 11.495 7.9077 1 1078800 54224 6759 36501 37320 63010 63010 -0.011655171932488884 RPRPSEDTFL 10 Unmodified _RPRPSEDTFL_ 0 0 0 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3163452148438 2 609.317294 1216.62004 NaN NaN NaN NaN NaN NaN NaN 33.522 1 33.522 33.022 34.022 0 0 0 0 0.048504 1 17589 17589 57.722 32.731 1 54225 6759 36502 37321 63011 63011 0.020390139036408073 RPRPSEDTFL 10 Unmodified _RPRPSEDTFL_ 0 0 0 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 ENSG00000160813|ENST00000292330|PPP1R35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3201293945312 2 609.317294 1216.62004 0.83334 0.00050777 0.6085 0.00037077 1.4418 0.00087854 609.3177459769703 36.864 0.25991 32.581 32.49 32.75 -4.2835 30 15 3 0 0 0 0.06987 1 21539 21539 53.404 20.618 1 11126000 54226 6759 36502 37321 63012 63012 0.020390139036408073 RPRPSSAHVGL 11 Unmodified _RPRPSSAHVGL_ 0 0 0 ENSG00000138771|ENST00000296043|SHROOM3;ENST00000486758.5_1_4:77631429-77663226:+|nuORF ENSG00000138771|ENST00000296043|SHROOM3 ENSG00000138771|ENST00000296043|SHROOM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2267761230469 3 392.891389 1175.65234 1.2622 0.0004959 -0.61514 -0.00024168 0.64705 0.00025422 392.8911287422541 19.512 0.33072 16.856 16.699 17.03 -2.6564 81 30 3 0 0 0 0.33094 1 10280 10280 25.155 8.1064 1 28350000 54227 5103 36503 37322 63013 63013 0.07153846097344285 RPRPSTDVRAL 11 Unmodified _RPRPSTDVRAL_ 0 0 0 ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2459716796875 3 423.245832 1266.71567 0.11556 4.8909E-05 0.68602 0.00029035 0.80157 0.00033926 423.2461831638622 20.538 0.19971 20.548 20.451 20.651 0.010551 23 8 4 0 0 0 0.69321 1 10469 10469 4.8923 2.4575 1 2128300 54228 6573 36504 37323 63014 63014 0.09297786814590836 RPRPSTDVRAL 11 Unmodified _RPRPSTDVRAL_ 0 0 0 ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B ENSG00000158246|ENST00000289166|TENT5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2458190917969 3 423.245832 1266.71567 0.41413 0.00017528 0.72023 0.00030483 1.1344 0.00048011 423.2461557279806 23.416 0.31175 20.638 20.492 20.804 -2.7784 44 18 3 0 0 0 0.21175 2 12625 12625;12729 31.446 22.202 1 11947000 54229 6573 36504 37323 63015;63016 63015 0.09297786814590836 RPRPTEATV 9 Unmodified _RPRPTEATV_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.289794921875 2 513.788173 1025.56179 0.11845 6.086E-05 0.59311 0.00030473 0.71157 0.00036559 513.7885245946729 16.686 0.2243 14.129 14.018 14.242 -2.557 56 34 2 0 0 0 0.062454 1 8637 8637 41.956 20.419 1 5292600 54230 8905 36505 37324 63017 63017 0.05003377049024493 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5675354003906 3 409.566571 1225.67788 -0.48339 -0.00019798 4.3347 0.0017753 3.8513 0.0015774 409.56843368345227 29.08 0.19851 29.08 28.963 29.161 0 21 9 3 0 0 0 0.25257 1 15044 15044 29.291 13.753 1 2832400 54231 8905 36506 37325 63018 63018 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.847412109375 2 613.846219 1225.67788 -0.17624 -0.00010819 0.69481 0.00042651 0.51857 0.00031832 613.846862659185 29.081 0.17922 29.081 28.963 29.142 0 17 8 3 0 0 0 0.15597 1 15052 15052 24.882 12.009 1 1825800 54232 8905 36506 37325 63019 63019 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5674133300781 3 409.566571 1225.67788 0.62118 0.00025441 -0.10465 -4.286E-05 0.51653 0.00021155 409.5665672379834 29.014 0.25016 28.952 28.834 29.084 -0.062159 27 10 4 0 0 0 0.16638 1 14985 14985 34.79 12.991 1 22754000 54233 8905 36506 37325 63020 63020 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.8460693359375 2 613.846219 1225.67788 0.71713 0.00044021 -0.35546 -0.0002182 0.36167 0.00022201 613.8458205041834 29.027 0.22712 28.965 28.834 29.061 -0.062159 21 9 3 0 0 0 0.0057099 1 14987 14987 70.929 33.854 1 12283000 54234 8905 36506 37325 63021 63021 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5677490234375 3 409.566571 1225.67788 1.2091 0.00049521 1.2703 0.00052029 2.4795 0.0010155 409.5671956770855 32.365 0.44798 28.509 28.284 28.732 -3.8562 76 25 4 0 0 0 0.11523 2 18490 18357;18490 40.714 18.915 1 97870000 54235 8905 36506 37325 63022;63023 63023 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8471069335938 2 613.846219 1225.67788 0.97554 0.00059883 0.26753 0.00016422 1.2431 0.00076306 613.8464220354368 32.356 0.43118 28.5 28.301 28.732 -3.8562 57 24 3 0 0 0 0.0023175 2 18360 18360;18491 85.764 36.237 1 62838000 54236 8905 36506 37325 63024;63025 63024 0.07407275829086757 RPRPTEATVSL 11 Unmodified _RPRPTEATVSL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45;ENST00000592297.2_1_19:1083019-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 409.566571 1225.67788 0.62118 0.00025441 -0.10465 -4.286E-05 0.51653 0.00021155 409.5665672379834 29.014 0.25016 28.952 28.834 29.084 -0.062159 -0.064172 -0.00043966 NaN 34.79 27 10 4 NaN NaN NaN NaN 0 NaN NaN 0 22754000 54237 8905 36506 37325 0.07407275829086757 RPRPTKTSF 9 Unmodified _RPRPTKTSF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8774108886719 3 363.876969 1088.60908 -0.023879 -8.6892E-06 1.1242 0.00040908 1.1003 0.00040039 363.87733340588585 14.947 0.10006 14.953 14.896 14.996 0.0057764 7 3 3 0 0 0 0.43515 1 7437 7437 10.8 2.644 1 1449500 54238 1817 36507 37326 63026 63026 0.06831656320036927 RPRPTKTSF 9 Unmodified _RPRPTKTSF_ 0 0 0 ENSG00000100403|ENST00000352645|ZC3H7B;ZC3H7B-RBX1|1|fusion ENSG00000100403|ENST00000352645|ZC3H7B ENSG00000100403|ENST00000352645|ZC3H7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8774719238281 3 363.876969 1088.60908 0.82402 0.00029984 0.58916 0.00021438 1.4132 0.00051423 363.8772145085449 15.286 0.26066 12.759 12.63 12.89 -2.5273 140 44 4 0 0 0 0.12357 1 7793 7793 30.703 8.0454 1 65024000 54239 1817 36507 37326 63027 63027 0.06831656320036927 RPRPWKHR 8 Unmodified _RPRPWKHR_ 0 0 0 REV__ENST00000375640.7_1_6:31802385-31802835:+|nuORF REV__ENST00000375640.7_1_6:31802385-31802835:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.6950988769531 3 378.224814 1131.65261 1.6044 0.00060682 -0.078741 -2.9782E-05 1.5256 0.00057703 378.224841972428 19.965 0.29661 17.309 17.174 17.471 -2.6564 40 16 3 0 0 0 8.7369 1 10535 10535 1.3295 1.0225 1 4842000 + 54240 26206 36508 37327 63028 63028 0.09205310607831052 RPRQQDPHL 9 Unmodified _RPRQQDPHL_ 0 0 0 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.875244140625 3 382.875739 1145.60539 -0.62748 -0.00024025 0.23636 9.0497E-05 -0.39112 -0.00014975 382.87574391694375 15.04 0.11347 15.04 14.988 15.102 0 54 31 2 0 0 0 0.40476 1 7192 7192 12.241 1.4411 1 1352900 54241 2341 36509 37328 63029 63029 0.03840986546174463 RPRQQDPHL 9 Unmodified _RPRQQDPHL_ 0 0 0 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8763427734375 3 382.875739 1145.60539 0.59578 0.00022811 0.13357 5.1142E-05 0.72935 0.00027925 382.8757912304154 15.162 0.20145 12.635 12.526 12.728 -2.5273 74 29 3 0 0 0 0.2289 1 7717 7717 20.581 6.4102 1 10798000 54242 2341 36509 37328 63030 63030 0.03840986546174463 RPRRDIGTIL 10 Unmodified _RPRRDIGTIL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5792541503906 3 399.578923 1195.71494 0.9802 0.00039167 -0.23731 -9.4824E-05 0.74289 0.00029684 399.57882596573467 33.327 0.46503 29.342 29.143 29.608 -3.9853 75 27 4 0 0 0 0.40136 1 19062 19062 18.721 10.776 1 172700000 54243 7612 36510 37329 63031 63031 0.12490992165544412 RPRRDIGTIL 10 Unmodified _RPRRDIGTIL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.865478515625 2 598.864746 1195.71494 0.36306 0.00021742 -2.051 -0.0012283 -1.6879 -0.0010108 598.8636374910135 33.388 0.065483 29.403 29.369 29.434 -3.9853 5 3 2 0 0 0 0.46077 1 19127 19127 18.373 3.1246 1 9910100 54244 7612 36510 37329 63032 63032 0.12490992165544412 RPRREEVK 8 Unmodified _RPRREEVK_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2129211425781 3 357.212351 1068.61522 0.84869 0.00030316 -0.054405 -1.9434E-05 0.79429 0.00028373 357.2123136898938 15.978 0.11493 13.421 13.329 13.444 -2.557 37 25 2 0 0 0 0.67686 1 8235 8235 19.257 0 1 4681700 54245 5556 36511 37330 63033 63033 0.08366174551565564 RPRREEVKL 9 Unmodified _RPRREEVKL_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.9073181152344 3 394.907039 1181.69929 0.36342 0.00014352 -0.19416 -7.6675E-05 0.16926 6.6841E-05 394.90696310711564 15.99 0.32373 13.433 13.285 13.608 -2.557 190 61 4 0 0 0 0.19127 1 8308 8308 28.495 6.9575 1 76677000 54246 5556 36512 37331 63034 63034 0.11570705648477997 RPRRGRWAR 9 Unmodified _RPRRGRWAR_ 0 0 0 REV__ENST00000247226.12_1_14:65215689-65216046:+|nuORF REV__ENST00000247226.12_1_14:65215689-65216046:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.2436828613281 3 404.242868 1209.70677 NaN NaN NaN NaN NaN NaN NaN 17.524 1 14.937 14.437 15.437 -2.5866 0 0 0 0.82739 1 9171 9171 2.4985 0 1 + 54247 24870 36513 37332 63035 63035 0.11030902759398487 RPRRLRLVR 9 Unmodified _RPRRLRLVR_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 1223.655883789062 1 1221.8127 1220.80543 0.79175 0.00096737 -2.1094 -0.0025772 -1.3176 -0.0016099 1221.8130174554199 69.293 0.16356 63.117 63.011 63.174 -6.1757 14 8 3 0 0 0 0.61256 1 45193 45193 0.6015 0 1 24907000 54248 8706 36514 37333 63036 63036 0.20385506004436138 RPRRPPTVF 9 Unmodified _RPRRPPTVF_ 0 0 0 MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant;ENSG00000166987|ENST00000355673|MBD6 MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2274169921875 3 375.892842 1124.6567 0.4464 0.0001678 -0.23853 -8.966E-05 0.20787 7.8139E-05 375.8925774874248 25.868 0.30141 22.917 22.735 23.036 -2.9511 31 19 2 0 0 0 0.27545 1 14146 14146 18.373 9.3968 1 8573000 54249 15986 36515 37334 63037 63037 0.09935355310881278 RPRRQGEVTVL 11 Unmodified _RPRRQGEVTVL_ 0 0 0 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.5936279296875 3 437.593232 1309.75787 0.30459 0.00013329 0.17986 7.8707E-05 0.48445 0.00021199 437.59341952069417 23.58 0.30163 20.753 20.613 20.915 -2.8273 34 17 3 0 0 0 0.37147 1 12762 12762 23.016 12.7 1 6235900 54250 8998 36516 37335 63038 63038 0.11537762222951642 RPRRQGEVTVL 11 Unmodified _RPRRQGEVTVL_ 0 0 0 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 437.593232 1309.75787 0.34767 0.00015214 -0.65184 -0.00028524 -0.30417 -0.0001331 437.5928623560141 20.966 0.14414 20.976 20.844 20.988 0.010551 0.11184 -0.00076139 NaN 23.016 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1530300 54251 8998 36516 37335 0.11537762222951642 RPRRRKLLA 9 Unmodified _RPRRRKLLA_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.392333984375 2 583.391265 1164.76798 1.5378 0.00089713 0.19514 0.00011384 1.7329 0.001011 583.391045435388 105.13 0.14411 98.952 98.867 99.011 -6.1757 61 26 3 0 0 0 0.62242 1 70363 70363 0 0 1 154100000 + 54252 29527 36517 37336 63039 63039 0.1921841473886161 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS AL20221201_MKP_PDAC_01 4 441.2982177734375 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 108.46 1 102.28 101.78 102.78 -6.1757 0 0 0 1.0061 1 72489 72489 0 0 1 + 54253 29527 36518 37337 63040 63040 0.22148866441557402 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS AL20221201_MKP_PDAC_01 4 441.2979736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 109.63 1 103.45 102.95 103.95 -6.1757 0 0 0 1.0061 1 73204 73204 0 0 1 + 54254 29527 36518 37337 63041 63041 0.22148866441557402 RPRRRKLLAR 10 Unmodified _RPRRRKLLAR_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MSMS AL20221201_MKP_PDAC_01 4 441.29736328125 3 441.296973 1320.86909 NaN NaN NaN NaN NaN NaN NaN 109.85 1 103.67 103.17 104.17 -6.1757 0 0 0 1.0061 1 73339 73339 0 0 1 + 54255 29527 36518 37337 63042 63042 0.22148866441557402 RPRRRTRR 8 Unmodified _RPRRRTRR_ 0 0 0 REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.37060546875 2 577.366113 1152.71767 NaN NaN NaN NaN NaN NaN NaN 107.11 1 100.93 100.43 101.43 -6.1757 0 0 0 0.97444 1 71661 71661 0.69038 0 1 + 54256 24860 36519 37338 63043 63043 0.1474230513370003 RPRRRTRR 8 Unmodified _RPRRRTRR_ 0 0 0 REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.3695678710938 2 577.366113 1152.71767 NaN NaN NaN NaN NaN NaN NaN 108.11 1 101.93 101.43 102.43 -6.1757 0 0 0 0.97444 1 72266 72266 0.69038 0 1 + 54257 24860 36519 37338 63044 63044 0.1474230513370003 RPRRTDLTVL 10 Unmodified _RPRRTDLTVL_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF;ENST00000592597.1_1_19:1093873-1095344:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5830383300781 3 409.582444 1225.7255 -0.092701 -3.7969E-05 2.0762 0.00085039 1.9835 0.00081242 409.58330991379137 28.568 0.47245 28.597 28.444 28.917 0.029564 34 18 2 0 0 0 0.39689 1 14844 14844 21.799 2.1735 1 10401000 54258 1712 36520 37339 63045 63045 0.12166974819933785 RPRRTILEV 9 Unmodified _RPRRTILEV_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.8963012695312 3 380.571768 1138.69348 1.2471 0.00047462 1.3642 0.00051916 2.6113 0.00099378 380.5722073492954 30.249 0.26381 26.752 26.592 26.856 -3.497 15 12 2 0 0 0 0.21572 1 17091 17091 4.5289 0 1 11758000 54259 9670 36521 37340 63046 63046 0.12967607136806691 RPRRTILEVL 10 Unmodified _RPRRTILEVL_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.266845703125 3 418.266456 1251.77754 -0.11594 -4.8494E-05 -0.30806 -0.00012885 -0.424 -0.00017735 418.2664172550363 44.488 0.18159 44.466 44.325 44.506 -0.022064 13 8 2 0 0 0 0.36277 1 23861 23861 23.801 9.5829 1 6368500 54260 9670 36522 37341 63047 63047 0.16172138233719124 RPRRVEQNGPI 11 Unmodified _RPRRVEQNGPI_ 0 0 0 REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF REV__ENST00000432735.5_1_21:47661679-47661916:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2544250488281 3 441.253098 1320.73747 0.30522 0.00013468 -0.19405 -8.5626E-05 0.11116 4.9052E-05 441.58728609764097 24.804 0.25772 21.921 21.778 22.036 -2.8831 28 15 2 0 0 0 0.70435 1 13485 13485 3.8459 1.0026 1 9801200 + 54261 26992 36523 37342 63048 63048 0.08992591563151109 RPRSSNAETLY 11 Unmodified _RPRSSNAETLY_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3 ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.834228515625 2 647.330933 1292.64731 0.6762 0.00043772 0.28467 0.00018427 0.96086 0.000622 647.3312223504889 22.197 0.24176 19.462 19.32 19.562 -2.7348 22 12 2 0 0 0 0.20054 1 11894 11894 32.037 9.3012 1 2356900 54262 4327 36524 37343 63049 63049 0.012694974440591977 RPRSSNAETLY 11 Unmodified _RPRSSNAETLY_ 0 0 0 ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3 ENSG00000131467|ENST00000590720|PSME3 ENSG00000131467|ENST00000590720|PSME3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8906860351562 3 431.889714 1292.64731 0.8709 0.00037613 0.66717 0.00028815 1.5381 0.00066428 431.89025916311385 22.206 0.47748 19.472 19.256 19.733 -2.7348 49 25 3 0 0 0 0.35681 1 11908 11908 19.144 10.392 1 8879100 54263 4327 36524 37343 63050 63050 0.012694974440591977 RPRSTLVM 8 Unmodified _RPRSTLVM_ 0 0 0 ENST00000551907.1_1_12:49783458-49783719:+|nuORF;ENST00000395941.4_1_12:27107091-27110700:+|nuORF;nc|ENSG00000111790|Q9NVK5-3|FGFR1OP2;nc|ENSG00000111790|Q9NVK5-2|FGFR1OP2;ENSG00000111790|ENST00000229395|FGFR1OP2 ENST00000551907.1_1_12:49783458-49783719:+|nuORF ENST00000551907.1_1_12:49783458-49783719:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7738037109375 2 480.276386 958.53822 0.65326 0.00031375 -4.4445 -0.0021346 -3.7912 -0.0018208 480.27660982071245 26.707 0.32033 23.756 23.619 23.939 -2.9511 26 16 2 0 0 0 0.46677 1 14788 14788 37.974 13.3 1 6356900 54264 2827 36525 37344 63051 63051 0.057292400108849506 RPRSWREL 8 Unmodified _RPRSWREL_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2;ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2080688476562 3 367.20883 1098.60466 0.87194 0.00032018 -0.91172 -0.00033479 -0.039779 -1.4607E-05 367.208396508668 24.204 0.38457 21.377 21.178 21.562 -2.8273 48 21 3 0 0 0 0.61095 2 13228 13105;13228 24.991 16.149 1 13351000 54265 2966;5500 36526 37345 63052;63053 63053 0.05930191897118675 RPRTPGGL 8 Unmodified _RPRTPGGL_ 0 0 0 REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2541198730469 2 427.253769 852.492984 0.10296 4.3991E-05 0.85248 0.00036423 0.95545 0.00040822 427.25415470569874 15.74 0.28845 15.746 15.643 15.932 0.0057774 53 24 3 0 0 0 0.80232 1 7924 7924 5.2307 0 1 2269600 + 54266 25194 36527 37346 63054 63054 0.060837575400114474 RPRTPGGL 8 Unmodified _RPRTPGGL_ 0 0 0 REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF REV__ENST00000281142.9_2_4:130014399-130014606:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 427.253769 852.492984 0.10296 4.3991E-05 0.85248 0.00036423 0.95545 0.00040822 427.25415470569874 15.74 0.28845 15.746 15.643 15.932 0.0057774 -0.14724 3.2389E-05 NaN 5.2307 53 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2269600 + 54267 25194 36527 37346 0.060837575400114474 RPRTPPEAIAL 11 Unmodified _RPRTPPEAIAL_ 0 0 0 ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B ENSG00000082701|ENST00000264235|GSK3B ENSG00000082701|ENST00000264235|GSK3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5753173828125 3 407.575178 1219.70371 0.031963 1.3027E-05 0.29685 0.00012099 0.32881 0.00013402 407.5753887564008 39.291 0.34018 39.302 39.129 39.469 0.011452 34 15 3 0 0 0 0.66175 1 20877 20877 7.846 0.74432 1 1846300 54268 1351 36528 37347 63055 63055 0.10264170071377521 RPRTPPLI 8 Unmodified _RPRTPPLI_ 0 0 0 ENST00000468303.5_1_1:24742648-24743062:-|nuORF ENST00000468303.5_1_1:24742648-24743062:-|nuORF ENST00000468303.5_1_1:24742648-24743062:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.3010559082031 2 475.300719 948.586885 0.072174 3.4304E-05 0.49777 0.00023659 0.56995 0.0002709 475.3009546656095 33.841 0.49361 33.87 33.543 34.036 0.028934 65 21 4 0 0 0 0.52622 2 17796 17699;17796 32.305 0 1 46846000 54269 13805 36529 37348 63056;63057 63057 0.11053476642291571 RPRTPPLI 8 Unmodified _RPRTPPLI_ 0 0 0 ENST00000468303.5_1_1:24742648-24743062:-|nuORF ENST00000468303.5_1_1:24742648-24743062:-|nuORF ENST00000468303.5_1_1:24742648-24743062:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.3007202148438 2 475.300719 948.586885 1.2373 0.00058809 -0.50457 -0.00023982 0.73273 0.00034827 475.3005262322646 37.517 0.70837 33.234 32.908 33.616 -4.2835 110 42 4 0 0 0 0.52622 2 22157 22030;22157 32.305 0 1 132170000 54270 13805 36529 37348 63058;63059 63059 0.11053476642291571 RPRVALQQSF 10 Unmodified _RPRVALQQSF_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.344482421875 2 601.343646 1200.67274 -0.16571 -9.9648E-05 1.0231 0.00061525 0.85741 0.0005156 601.3442429025198 32.978 0.20463 33.008 32.914 33.118 0.029743 20 8 3 0 0 0 0.17714 1 17321 17321 36.506 16.092 1 3552900 54271 927 36530 37349 63060 63060 0.08043016757119403 RPRVALQQSF 10 Unmodified _RPRVALQQSF_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2318420410156 3 401.231523 1200.67274 -0.22065 -8.853E-05 2.4791 0.00099467 2.2584 0.00090614 401.23203346420866 32.978 0.37709 33.008 32.763 33.14 0.029743 21 16 2 0 0 0 0.44373 1 17366 17366 16.566 7.5896 1 8401100 54272 927 36530 37349 63061 63061 0.08043016757119403 RPRVALQQSF 10 Unmodified _RPRVALQQSF_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.3438720703125 2 601.343646 1200.67274 0.54874 0.00032998 0.1047 6.296E-05 0.65344 0.00039294 601.3433156281042 37.358 0.32132 33.074 32.908 33.229 -4.2835 35 18 3 0 0 0 0.051223 1 21865 21865 57.722 45.481 1 8772700 54273 927 36530 37349 63062 63062 0.08043016757119403 RPRVALQQSF 10 Unmodified _RPRVALQQSF_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2315368652344 3 401.231523 1200.67274 1.3307 0.00053391 -0.13754 -5.5185E-05 1.1931 0.00047872 401.2313594942698 37.369 0.36986 33.086 32.873 33.242 -4.2835 50 21 3 0 0 0 0.04925 1 21870 21870 42.312 29.457 1 17335000 54274 927 36530 37349 63063 63063 0.08043016757119403 RPRVGPVRKAR 11 Unmodified _RPRVGPVRKAR_ 0 0 0 REV__ENST00000426877.2_1_19:7747338-7747389:+|nuORF REV__ENST00000426877.2_1_19:7747338-7747389:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.412353515625 2 646.412729 1290.8109 -0.42452 -0.00027442 0.91386 0.00059073 0.48934 0.00031631 646.4133829679415 103.46 0.1339 103.42 103.34 103.47 -0.047928 6 5 2 0 0 0 0.30605 1 57483 57483 0 0 1 709260 + 54275 26912 36531 37350 63064 63064 0.17713184796275527 RPRVPTEEL 9 Unmodified _RPRVPTEEL_ 0 0 0 ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2095336914062 3 366.208495 1095.60366 1.6226 0.00059421 -0.80923 -0.00029635 0.81339 0.00029787 366.2082084563058 32.18 0.3157 28.324 28.147 28.463 -3.8562 36 18 3 0 0 0 0.05447 1 18257 18257 33.445 10.787 1 17640000 54276 7990 36532 37351 63065 63065 0.059679327375761204 RPRVPTEEL 9 Unmodified _RPRVPTEEL_ 0 0 0 ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8087158203125 2 548.809105 1095.60366 0.92702 0.00050875 -1.3957 -0.00076595 -0.46864 -0.0002572 548.8084874374694 32.145 0.30151 28.449 28.322 28.623 -3.6958 29 17 2 0 0 0 0.047788 1 18270 18270 45.7 11.298 1 20525000 54277 7990 36532 37351 63066 63066 0.059679327375761204 RPRVPTEEL 9 Unmodified _RPRVPTEEL_ 0 0 0 ENSG00000170468|ENST00000304061|RIOX1;nc|ENSG00000170468|Q9H6W3-2|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 ENSG00000170468|ENST00000304061|RIOX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 366.208495 1095.60366 -0.61109 -0.00022379 0.23442 8.5847E-05 -0.37667 -0.00013794 366.20858684690296 28.665 0.22298 28.665 28.538 28.761 0 0.1708 0.00063386 NaN 33.445 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 6727600 54278 7990 36532 37351 0.059679327375761204 RPRVRVEAL 9 Unmodified _RPRVRVEAL_ 0 0 0 ENSG00000244005|ENST00000374092|NFS1;nc|ENSG00000244005|Q9Y697-2|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENST00000480655.5_1_20:34262894-34263203:-|nuORF ENSG00000244005|ENST00000374092|NFS1 ENSG00000244005|ENST00000374092|NFS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8967590332031 3 365.896363 1094.66726 0.92668 0.00033907 -0.41982 -0.00015361 0.50686 0.00018546 365.8960662686666 26.331 0.4473 23.38 23.094 23.542 -2.9511 72 24 4 0 0 0 0.19361 1 14503 14503 23.79 3.3752 1 64835000 54279 10722 36533 37352 63067 63067 0.12371337965328166 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8841247558594 3 375.884012 1124.63021 -0.36247 -0.00013625 1.2567 0.00047238 0.89424 0.00033613 375.8844586915034 23.936 0.20484 23.936 23.811 24.016 0 30 9 4 0 0 0 0.50362 1 12193 12193 14.218 8.0263 1 3389700 54280 1799 36534 37353 63068 63068 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8845520019531 3 375.884012 1124.63021 0.079122 2.9741E-05 0.23521 8.8413E-05 0.31434 0.00011815 375.88406514914726 24.097 0.20141 24.095 24.004 24.206 -0.0016747 25 10 3 0 0 0 0.087043 1 12291 12291 36.395 22.177 1 7764300 54281 1799 36534 37353 63069 63069 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.322265625 2 563.32238 1124.63021 0.25612 0.00014428 1.0825 0.00060979 1.3386 0.00075407 563.3228489912299 24.127 0.18842 24.125 24.017 24.206 -0.0016766 16 9 2 0 0 0 0.32493 1 12304 12304 26.021 4.4306 1 3846300 54282 1799 36534 37353 63070 63070 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8844909667969 3 375.884012 1124.63021 0.15961 5.9996E-05 -0.99827 -0.00037523 -0.83866 -0.00031524 376.2181706295198 23.859 0.1325 23.88 23.812 23.944 0.021185 10 5 3 0 0 0 0.50362 1 12304 12304 10.315 2.3698 1 1212000 54283 1799 36534 37353 63071 63071 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.322509765625 2 563.32238 1124.63021 0.64179 0.00036153 -0.28898 -0.00016279 0.35281 0.00019874 563.3222397819294 27.479 0.39835 24.442 24.239 24.637 -3.0365 46 19 3 0 0 0 0.087164 2 15162 15162;15274 49.527 19.687 1 61813000 54284 1799 36534 37353 63072;63073 63072 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8843688964844 3 375.884012 1124.63021 0.97095 0.00036497 -0.31662 -0.00011901 0.65433 0.00024595 375.88380410839244 27.454 0.39643 24.418 24.219 24.615 -3.0365 49 19 4 0 0 0 0.095786 2 15176 15176;15290 35.08 24.764 1 60431000 54285 1799 36534 37353 63074;63075 63074 0.07287621628893248 RPRVTEPISA 10 Unmodified _RPRVTEPISA_ 0 0 0 nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1 nc|ENSG00000100342|O14791-3|APOL1 nc|ENSG00000100342|O14791-3|APOL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 375.884012 1124.63021 -0.36247 -0.00013625 1.2567 0.00047238 0.89424 0.00033613 375.8844586915034 23.936 0.20484 23.936 23.811 24.016 0 -0.034113 0.00049513 NaN 36.395 30 9 4 NaN NaN NaN NaN 0 NaN NaN 0 3389700 54286 1799 36534 37353 0.07287621628893248 RPRWGALGDYL 11 Unmodified _RPRWGALGDYL_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN;ENST00000591949.1_1_19:36237385-36237745:+|nuORF ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2355346679688 3 435.235045 1302.6833 0.57921 0.00025209 -0.19262 -8.3837E-05 0.38658 0.00016826 435.23490732571 59.144 0.24298 59.083 58.943 59.186 -0.060719 29 11 3 0 0 0 0.64126 1 32197 32197 9.2438 3.0519 1 5751800 54287 10350 36535 37354 63076 63076 0.04406999411571633 RPRWGALGDYL 11 Unmodified _RPRWGALGDYL_ 0 0 0 ENSG00000205155|ENST00000587708|PSENEN;ENST00000591949.1_1_19:36237385-36237745:+|nuORF ENSG00000205155|ENST00000587708|PSENEN ENSG00000205155|ENST00000587708|PSENEN MSMS AL20221201_MKP_PDAC_01 4 435.2379150390625 3 435.235045 1302.6833 NaN NaN NaN NaN NaN NaN NaN 92.432 1 86.257 85.757 86.757 -6.1757 0 0 0 0.86919 1 61127 61127 8.7518 2.5174 1 54288 10350 36535 37354 63077 63077 0.04406999411571633 RPRWHDTAM 9 Unmodified _RPRWHDTAM_ 0 0 0 nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000550867.5_1_12:49494323-49494422:-|nuORF;ENST00000552577.5_1_12:49491457-49495325:-|nuORF nc|ENSG00000139636|Q6UX01-3|LMBR1L nc|ENSG00000139636|Q6UX01-3|LMBR1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5270080566406 3 390.525942 1168.556 1.4308 0.00055878 0.44723 0.00017466 1.8781 0.00073343 390.5258442685732 20.107 0.32068 17.451 17.275 17.596 -2.6564 36 21 2 0 0 0 0.5029 1 10696 10696 7.609 2.5614 1 3018800 54289 5173 36536 37355 63078 63078 -0.02154044734265881 RPRWKWMRSRF 11 Unmodified _RPRWKWMRSRF_ 0 0 0 REV__ENST00000359013.4_1_3:30648217-30664756:+|nuORF REV__ENST00000359013.4_1_3:30648217-30664756:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 803.4390258789062 2 803.438421 1604.86229 1.5202 0.0012214 -1.076 -0.00086451 0.44419 0.00035688 803.437687436963 89.257 0.40807 83.081 82.865 83.273 -6.1757 49 22 3 0 0 0 0.74157 1 58825 58825 0.35063 0 1 22412000 + 54290 25883 36537 37356 63079 63079 0.08405185498622814 RPRYLCYCL 9 Unmodified _RPRYLCYCL_ 0 0 0 REV__nc|ENSG00000114487|Q86VD1-2|MORC1 REV__nc|ENSG00000114487|Q86VD1-2|MORC1 MSMS AL20221201_MKP_PDAC_01 4 396.2015686035156 3 396.200178 1185.5787 NaN NaN NaN NaN NaN NaN NaN 22.813 1 20.034 19.534 20.534 -2.7784 0 0 0 0.82396 1 12296 12296 2.7352 0 1 + 54291 18917 36538 37357 63080 63080 -0.006661616610017518 RPSAAGINL 9 Unmodified _RPSAAGINL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7598571777344 2 449.758884 897.503215 -0.060451 -2.7188E-05 1.4525 0.00065327 1.392 0.00062608 449.7594904219401 38.276 0.36888 37.989 37.827 38.196 -0.28687 34 16 3 0 0 0 0.11784 1 20113 20113 31.268 2.7815 1 5773100 54292 4745 36539 37358 63081 63081 0.05036320474550848 RPSAAPRLYSD 11 Unmodified _RPSAAPRLYSD_ 0 0 0 REV__ENSG00000156097|ENST00000527748|GPR61 REV__ENSG00000156097|ENST00000527748|GPR61 MSMS AL20221201_MKP_PDAC_01 4 411.5514221191406 3 411.550921 1231.63093 NaN NaN NaN NaN NaN NaN NaN 20.081 1 17.425 16.925 17.925 -2.6564 0 0 0 0.93582 1 10679 10679 5.5233 0.47577 1 + 54293 21310 36540 37359 63082 63082 0.024384162779369944 RPSALRTL 8 Unmodified _RPSALRTL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2826843261719 2 457.282526 912.550499 0.43271 0.00019787 0.57481 0.00026285 1.0075 0.00046072 457.2826025295868 24.219 0.14959 24.241 24.143 24.293 0.021185 7 5 2 0 0 0 0.70102 1 12505 12505 17.113 6.289 1 1676900 54294 5215 36541 37360 63083 63083 0.09072599745559273 RPSALRTL 8 Unmodified _RPSALRTL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2825927734375 2 457.282526 912.550499 0.57158 0.00026137 -0.66316 -0.00030325 -0.091586 -4.1881E-05 457.2821933878796 27.049 0.28656 24.013 23.854 24.14 -3.0365 23 14 2 0 0 0 0.4069 1 14953 14953 43.772 9.67 1 9882900 54295 5215 36541 37360 63084 63084 0.09072599745559273 RPSALRTLL 9 Unmodified _RPSALRTLL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8247680664062 2 513.824558 1025.63456 -0.011673 -5.9977E-06 -0.25909 -0.00013313 -0.27076 -0.00013912 513.8243993020045 41.602 0.29895 41.6 41.422 41.721 -0.0017929 33 13 4 0 0 0 0.2324 1 22201 22201 20.415 3.4722 1 30569000 54296 5215 36542 37361 63085 63085 0.12277130842471706 RPSALRTLL 9 Unmodified _RPSALRTLL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MSMS AL20221201_MKP_PDAC_01 4 513.8244018554688 2 513.824558 1025.63456 NaN NaN NaN NaN NaN NaN NaN 78.219 1 72.043 71.543 72.543 -6.1757 0 0 0 0.15231 1 51190 51190 36.506 7.4246 1 54297 5215 36542 37361 63086 63086 0.12277130842471706 RPSALRTLL 9 Unmodified _RPSALRTLL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MSMS AL20221201_MKP_PDAC_01 4 513.824462890625 2 513.824558 1025.63456 NaN NaN NaN NaN NaN NaN NaN 78.433 1 72.257 71.757 72.757 -6.1757 0 0 0 0.61214 1 51338 51338 12.241 0 1 54298 5215 36542 37361 63087 63087 0.12277130842471706 RPSANVYDL 9 Unmodified _RPSANVYDL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.767578125 2 517.766906 1033.51926 0.69385 0.00035925 -0.68035 -0.00035226 0.013496 6.988E-06 517.7666413746979 38.727 0.21321 38.727 38.577 38.79 0 14 9 2 0 0 0 0.15471 1 20720 20720 27.629 0 1 1394400 54299 3760 36543 37362 63088 63088 0.0038398192079966975 RPSARPSI 8 Unmodified _RPSARPSI_ 0 0 0 ENST00000486253.1_1_15:91479504-91483847:+|nuORF ENST00000486253.1_1_15:91479504-91483847:+|nuORF ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2607116699219 2 442.259051 882.503549 1.267 0.00056036 -1.2265 -0.00054243 0.040541 1.793E-05 442.2583690178677 20.174 0.6234 17.518 17.275 17.898 -2.6564 130 38 5 0 0 0 0.54555 1 10623 10623 30.637 0 1 521870000 54300 14180 36544 37363 63089 63089 0.05759740194423557 RPSASTQAL 9 Unmodified _RPSASTQAL_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7541198730469 2 465.753798 929.493044 0.65706 0.00030603 -1.3622 -0.00063444 -0.70513 -0.00032842 465.7531889408322 22.284 0.35949 19.55 19.374 19.733 -2.7348 34 18 2 0 0 0 0.047788 1 11942 11942 45.7 5.7423 1 7381300 54301 7694 36545 37364 63090 63090 0.025477127493331864 RPSDEVIREL 10 Unmodified _RPSDEVIREL_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.330078125 2 607.330402 1212.64625 0.29428 0.00017872 -0.15733 -9.5552E-05 0.13695 8.3172E-05 607.3301668519679 38.828 0.28684 38.828 38.725 39.012 0 26 12 3 0 0 0 0.23245 1 20786 20786 29.281 17.04 1 3861800 54302 1854 36546 37365 63091 63091 0.04843283075160798 RPSDEVIREL 10 Unmodified _RPSDEVIREL_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2227172851562 3 405.222693 1212.64625 0.36158 0.00014652 0.40288 0.00016326 0.76446 0.00030978 405.2228603542662 38.876 0.2423 38.876 38.747 38.99 0 22 10 3 0 0 0 0.1711 1 20815 20815 37.251 28.007 1 2002400 54303 1854 36546 37365 63092 63092 0.04843283075160798 RPSDEVIREL 10 Unmodified _RPSDEVIREL_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MSMS AL20221201_MKP_PDAC_01 4 405.2227172851562 3 405.222693 1212.64625 NaN NaN NaN NaN NaN NaN NaN 43.578 1 38.813 38.313 39.313 -4.7648 0 0 0 0.50273 1 26488 26488 26.121 17.369 1 54304 1854 36546 37365 63093 63093 0.04843283075160798 RPSDGPSQIAY 11 Unmodified _RPSDGPSQIAY_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7921142578125 2 595.793652 1189.57275 -0.78884 -0.00046998 0.77521 0.00046186 -0.013628 -8.1194E-06 595.7939895872703 30.476 0.28535 30.476 30.343 30.628 0 34 13 3 0 0 0 0.18424 1 15801 15801 32.898 18.316 1 8688100 54305 7678 36547 37366 63094 63094 -0.014452653673288296 RPSDGPSQIAY 11 Unmodified _RPSDGPSQIAY_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7937622070312 2 595.793652 1189.57275 0.38533 0.00022958 -0.044901 -2.6752E-05 0.34043 0.00020283 595.793357567666 34.509 0.43908 30.414 30.177 30.616 -4.0951 49 25 3 0 0 0 0.016317 2 19951 19831;19951 61.09 29.822 1 18603000 54306 7678 36547 37366 63095;63096 63096 -0.014452653673288296 RPSEGQSLISY 11 Unmodified _RPSEGQSLISY_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8139038085938 2 618.814584 1235.61462 NaN NaN NaN NaN NaN NaN NaN 40.64 1 40.64 40.14 41.14 0 0 0 0 0.13146 1 21858 21858 47.732 24.996 1 54307 5663 36548 37367 63097 63097 0.006232903212321617 RPSERPSL 8 Unmodified _RPSERPSL_ 0 0 0 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2623901367188 2 471.261791 940.509028 0.91705 0.00043217 -0.53292 -0.00025115 0.38413 0.00018102 471.2614011768736 19.36 0.25317 16.704 16.582 16.835 -2.6564 38 21 2 0 0 0 0.67686 2 10317 10214;10317 19.257 3.3081 1 7983200 54308 10080 36549 37368 63098;63099 63099 0.03639418986244891 RPSETLQKY 9 Unmodified _RPSETLQKY_ 0 0 0 nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000598553.1_1_19:50482353-50484290:-|nuORF nc|ENSG00000105053|Q8IV63-3|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3010864257812 2 561.301113 1120.58767 -0.21217 -0.00011909 0.8894 0.00049922 0.67724 0.00038013 561.3016997545857 19.017 0.11353 19.017 18.947 19.06 0 13 8 2 0 0 0 0.53557 1 9484 9484 5.2969 0 1 681930 54309 2272 36550 37369 63100 63100 0.032202265006844755 RPSFRNLDF 9 Unmodified _RPSFRNLDF_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5372619628906 3 384.536724 1150.58834 0.090918 3.4961E-05 0.5055 0.00019438 0.59642 0.00022934 384.5367935270672 45.73 0.27703 45.702 45.549 45.826 -0.028015 28 13 3 0 0 0 0.044296 1 24582 24582 37.771 22.933 1 6127700 54310 16141 36551 37370 63101 63101 0.019070659403496393 RPSGITTGY 9 Unmodified _RPSGITTGY_ 0 0 0 ENSG00000027847|ENST00000029410|B4GALT7;ENST00000505145.1_1_5:177034264-177036693:+|nuORF ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2487487792969 2 476.248349 950.482145 0.78252 0.00037267 -0.92295 -0.00043956 -0.14043 -6.6881E-05 476.2478764651155 28.626 0.32995 25.478 25.303 25.633 -3.1482 27 16 2 0 0 0 0.078314 1 15963 15963 38.176 3.7738 1 8367400 54311 567 36552 37371 63102 63102 0.004923103750343216 RPSGITTGY 9 Unmodified _RPSGITTGY_ 0 0 0 ENSG00000027847|ENST00000029410|B4GALT7;ENST00000505145.1_1_5:177034264-177036693:+|nuORF ENSG00000027847|ENST00000029410|B4GALT7 ENSG00000027847|ENST00000029410|B4GALT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 476.248349 950.482145 -0.26979 -0.00012849 -1.4463 -0.00068881 -1.7161 -0.00081729 476.24768811209447 25.395 0.28997 25.395 25.26 25.55 0 -0.041133 -0.000201 NaN 38.176 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1619400 54312 567 36552 37371 0.004923103750343216 RPSGKGIVEF 10 Unmodified _RPSGKGIVEF_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3059692382812 2 545.306198 1088.59784 -0.43374 -0.00023652 -0.019239 -1.0491E-05 -0.45298 -0.00024701 545.3062210119967 34.648 0.233 34.648 34.54 34.773 0 29 11 3 0 0 0 0.40046 1 18275 18275 21.59 4.4773 1 10023000 54313 5827 36553 37372 63103 63103 0.057088342259021374 RPSGKGIVEF 10 Unmodified _RPSGKGIVEF_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.30615234375 2 545.306198 1088.59784 -0.47619 -0.00025967 0.21716 0.00011842 -0.25903 -0.00014125 545.3062932332855 34.585 0.49546 34.394 34.226 34.722 -0.19131 74 22 4 0 0 0 0.40046 1 18170 18170 21.59 2.3332 1 53113000 54314 5827 36553 37372 63104 63104 0.057088342259021374 RPSGKGIVEF 10 Unmodified _RPSGKGIVEF_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8732299804688 3 363.873224 1088.59784 -0.30348 -0.00011043 0.59993 0.0002183 0.29645 0.00010787 363.87346006722197 34.726 0.35066 34.535 34.371 34.722 -0.19131 45 15 4 0 0 0 0.23548 1 18172 18172 32.898 23.354 1 31577000 54315 5827 36553 37372 63105 63105 0.057088342259021374 RPSGKGIVEF 10 Unmodified _RPSGKGIVEF_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3067016601562 2 545.306198 1088.59784 0.85065 0.00046387 -0.82217 -0.00044833 0.028486 1.5534E-05 545.3057617593521 38.133 0.57419 33.764 33.456 34.03 -4.3689 102 34 4 0 0 0 0.017375 2 22328 22328;22454 78.06 34.202 1 198190000 54316 5827 36553 37372 63106;63107 63106 0.057088342259021374 RPSGKGIVEF 10 Unmodified _RPSGKGIVEF_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8735961914062 3 363.873224 1088.59784 1.6013 0.00058268 -0.33423 -0.00012162 1.2671 0.00046106 363.87307657423145 38.135 0.52831 33.766 33.501 34.03 -4.3689 95 31 4 0 0 0 0.44171 2 22333 22333;22456 17.049 6.898 1 147610000 54317 5827 36553 37372 63108;63109 63108 0.057088342259021374 RPSGLHGDVSL 11 Unmodified _RPSGLHGDVSL_ 0 0 0 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 ENSG00000149016|ENST00000476907|TUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2060546875 3 379.871883 1136.59382 -0.81429 -0.00030933 0.53842 0.00020453 -0.27587 -0.00010479 379.87207301707633 30.287 0.22255 30.287 30.16 30.383 0 23 10 3 0 0 0 0.12819 1 15724 15724 27.289 11.551 1 2521200 54318 5978 36554 37373 63110 63110 0.03098744732187697 RPSGPGPEL 9 Unmodified _RPSGPGPEL_ 0 0 0 nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 nc|ENSG00000080503|P51531-2|SMARCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2421569824219 2 455.243067 908.47158 -0.36001 -0.00016389 -0.31231 -0.00014218 -0.67232 -0.00030607 455.24288635454394 28.12 0.28621 28.12 27.985 28.271 0 39 17 4 0 0 0 0.11784 2 14473 14473;14570 31.268 4.3847 1 5932100 54319 1298 36555 37374 63111;63112 63111 0.013683277206155253 RPSGPSKAL 9 Unmodified _RPSGPSKAL_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7669067382812 2 456.766709 911.518865 -0.17838 -8.1476E-05 -0.14504 -6.6251E-05 -0.32342 -0.00014773 456.7666606690935 15.74 0.16067 15.74 15.669 15.829 0 80 36 3 0 0 0 0.30202 1 7582 7582 17.113 1.2657 1 1631100 54320 1645 36556 37375 63113 63113 0.05956606991605895 RPSGPSKAL 9 Unmodified _RPSGPSKAL_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7676086425781 2 456.766709 911.518865 0.30169 0.0001378 1.3066 0.0005968 1.6083 0.0007346 456.7671387110146 15.747 0.20476 15.752 15.643 15.848 0.0057774 39 17 3 0 0 0 0.20428 1 7833 7833 22.736 0.98964 1 2143400 54321 1645 36556 37375 63114 63114 0.05956606991605895 RPSGPSKAL 9 Unmodified _RPSGPSKAL_ 0 0 0 nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 nc|ENSG00000095139|P48444-2|ARCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7670288085938 2 456.766709 911.518865 0.23101 0.00010552 0.66998 0.00030602 0.90099 0.00041154 456.76695161949544 16.491 0.26387 13.934 13.78 14.044 -2.557 87 37 3 0 0 0 0.015688 2 8495 8495;8598 67.838 17.905 1 13201000 54322 1645 36556 37375 63115;63116 63115 0.05956606991605895 RPSHPLKSF 9 Unmodified _RPSHPLKSF_ 0 0 0 nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 nc|ENSG00000067141|Q92859-3|NEO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8705444335938 3 356.869814 1067.58761 1.4808 0.00052844 -0.084158 -3.0034E-05 1.3966 0.00049841 356.86967325557504 18.725 0.25154 16.104 15.99 16.242 -2.6215 36 19 2 0 0 0 0.20507 1 9887 9887 21.799 16.397 1 4401400 54323 949 36557 37376 63117 63117 0.05652271291342004 RPSHVHSLSSI 11 Unmodified _RPSHVHSLSSI_ 0 0 0 REV__ENST00000487459.5_1_7:116660544-116830896:+|nuORF REV__ENST00000487459.5_1_7:116660544-116830896:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.2247924804688 3 407.222916 1218.64692 NaN NaN NaN NaN NaN NaN NaN 20.189 1 17.505 17.005 18.005 -2.6842 0 0 0 0.79635 1 10744 10744 9.7643 5.0483 1 + 54324 27827 36558 37377 63118 63118 0.046341225148580634 RPSLALSWRLS 11 Unmodified _RPSLALSWRLS_ 0 0 0 REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3724365234375 2 643.372404 1284.73025 0.69597 0.00044777 -0.27453 -0.00017663 0.42144 0.00027114 643.8732723374493 52.769 0.2423 52.706 52.583 52.826 -0.063423 23 11 3 0 0 0 0.33612 1 28593 28593 24.882 4.3006 1 3571800 + 54325 27198 36559 37378 63119 63119 0.09927858962691971 RPSLALSWRLS 11 Unmodified _RPSLALSWRLS_ 0 0 0 REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2506103515625 3 429.250695 1284.73025 0.66899 0.00028717 -0.38469 -0.00016513 0.2843 0.00012204 429.2505448479937 52.783 0.37869 52.719 52.522 52.901 -0.063423 66 18 5 0 0 0 0.51324 1 28660 28660 9.5301 2.101 1 66463000 + 54326 27198 36559 37378 63120 63120 0.09927858962691971 RPSLALSWRLS 11 Unmodified _RPSLALSWRLS_ 0 0 0 REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 429.250695 1284.73025 0.66899 0.00028717 -0.38469 -0.00016513 0.2843 0.00012204 429.2505448479937 52.783 0.37869 52.719 52.522 52.901 -0.063423 0 0 NaN 9.5301 66 18 5 NaN NaN NaN NaN 0 NaN NaN 0 66463000 + 54327 27198 36559 37378 0.09927858962691971 RPSLCARA 8 Unmodified _RPSLCARA_ 0 0 0 ENST00000431183.6_2_2:130939246-130939303:-|nuORF ENST00000431183.6_2_2:130939246-130939303:-|nuORF ENST00000431183.6_2_2:130939246-130939303:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.4646606445312 1 873.472332 872.465055 0.13971 0.00012203 -0.47673 -0.00041641 -0.33702 -0.00029438 873.4718151955251 93.224 0.97106 87.048 86.712 87.684 -6.1757 166 65 3 0 0 0 0.76266 1 61520 61520 11.64 0 1 188200000 54328 13255 36560 37379 63121 63121 0.02372111288252654 RPSLGGRTPL 10 Unmodified _RPSLGGRTPL_ 0 0 0 ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8771667480469 3 351.876969 1052.60908 0.015653 5.5079E-06 1.6568 0.00058298 1.6724 0.00058849 351.87714341697415 28.599 0.21013 28.628 28.52 28.73 0.029564 10 7 2 0 0 0 0.26918 1 14906 14906 29.291 15.073 1 1769100 54329 15868 36561 37380 63122 63122 0.08487656320039605 RPSLGGRTPL 10 Unmodified _RPSLGGRTPL_ 0 0 0 ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3128051757812 2 527.311815 1052.60908 0.10642 5.6116E-05 0.10668 5.6253E-05 0.2131 0.00011237 527.311968716003 28.606 0.18606 28.635 28.544 28.73 0.029564 12 6 3 0 0 0 0.45406 1 14916 14916 7.609 3.2797 1 3406200 54330 15868 36561 37380 63123 63123 0.08487656320039605 RPSLGGRTPL 10 Unmodified _RPSLGGRTPL_ 0 0 0 ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF ENST00000607957.1_1_7:123389284-123389566:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8770751953125 3 351.876969 1052.60908 NaN NaN NaN NaN NaN NaN NaN 32.239 1 28.383 27.883 28.883 -3.8562 0 0 0 0.72561 1 18348 18348 15.538 4.0437 1 54331 15868 36561 37380 63124 63124 0.08487656320039605 RPSLRLQL 8 Unmodified _RPSLRLQL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8125610351562 2 491.811451 981.608348 0.65959 0.0003244 0.35395 0.00017408 1.0135 0.00049847 491.8114819142308 45.935 0.30091 45.907 45.763 46.064 -0.028011 29 13 3 0 0 0 0.73714 1 24673 24673 13.906 0.39817 1 6384700 54332 5983 36562 37381 63125 63125 0.11680861670993181 RPSLRLQL 8 Unmodified _RPSLRLQL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 491.811451 981.608348 0.65959 0.0003244 0.35395 0.00017408 1.0135 0.00049847 491.8114819142308 45.935 0.30091 45.907 45.763 46.064 -0.028011 0 0 NaN 13.906 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6384700 54333 5983 36562 37381 0.11680861670993181 RPSLRLQLL 9 Unmodified _RPSLRLQLL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2391967773438 3 365.904747 1094.69241 0.67318 0.00024632 -0.26082 -9.5436E-05 0.41236 0.00015089 365.9046593036562 57.171 0.38014 57.105 56.917 57.297 -0.066036 44 18 4 0 0 0 0.094149 2 31079 31079;31177 32.037 16.299 1 12636000 54334 5983 36563 37382 63126;63127 63126 0.14885392767905614 RPSLRLQLL 9 Unmodified _RPSLRLQLL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3538818359375 2 548.353483 1094.69241 0.74742 0.00040985 -0.47702 -0.00026158 0.2704 0.00014828 548.3530140230013 57.183 0.28268 57.117 56.937 57.22 -0.066032 26 13 3 0 0 0 0.25681 1 31093 31093 19.257 2.1441 1 7015300 54335 5983 36563 37382 63128 63128 0.14885392767905614 RPSLRLQLL 9 Unmodified _RPSLRLQLL_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.9050903320312 3 365.904747 1094.69241 1.5991 0.00058512 -0.0024875 -9.1019E-07 1.5966 0.00058421 365.9047116065937 91.005 0.70157 84.829 84.505 85.207 -6.1757 113 40 4 0 0 0 0.047788 3 60032 60032;60158;60282 35.612 16.891 1 67651000 54336 5983 36563 37382 63129;63130;63131 63129 0.14885392767905614 RPSPRELRL 9 Unmodified _RPSPRELRL_ 0 0 0 ENSG00000060140|ENST00000075503|STYK1 ENSG00000060140|ENST00000075503|STYK1 ENSG00000060140|ENST00000075503|STYK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2279968261719 3 375.228001 1122.66217 0.19701 7.3922E-05 0.67769 0.00025429 0.8747 0.00032821 375.22811443239686 25.977 0.12798 26.004 25.962 26.09 0.026951 11 5 3 0 0 0 0.047788 1 13471 13471 57.249 28.755 1 7939000 54337 823 36564 37383 63132 63132 0.10575034102703285 RPSPRLEEL 9 Unmodified _RPSPRLEEL_ 0 0 0 REV__nc|ENSG00000135451|Q12815-3|TROAP REV__nc|ENSG00000135451|Q12815-3|TROAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2082824707031 3 366.208495 1095.60366 -0.61109 -0.00022379 0.23442 8.5847E-05 -0.37667 -0.00013794 366.20858684690296 28.665 0.22298 28.665 28.538 28.761 0 25 10 3 0 0 0 0.25681 1 14801 14801 13.615 0 1 6727600 + 54338 20068 36565 37384 63133 63133 0.059679327375761204 RPSPRLEEL 9 Unmodified _RPSPRLEEL_ 0 0 0 REV__nc|ENSG00000135451|Q12815-3|TROAP REV__nc|ENSG00000135451|Q12815-3|TROAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.8091430664062 2 548.809105 1095.60366 -0.36283 -0.00019913 0.0076677 4.2081E-06 -0.35517 -0.00019492 548.8091937234146 28.651 0.20236 28.651 28.579 28.781 0 14 9 2 0 0 0 0.40476 1 14810 14810 12.241 0 1 6223500 + 54339 20068 36565 37384 63134 63134 0.059679327375761204 RPSPVRVAAL 10 Unmodified _RPSPVRVAAL_ 0 0 0 ENST00000204005.13_1_19:41119864-41120272:+|nuORF ENST00000204005.13_1_19:41119864-41120272:+|nuORF ENST00000204005.13_1_19:41119864-41120272:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8886108398438 3 355.889097 1064.64546 -0.03263 -1.1613E-05 -0.41835 -0.00014888 -0.45098 -0.0001605 355.8888119923073 33.533 0.25914 33.562 33.461 33.72 0.028934 20 11 2 0 0 0 0.55245 1 17705 17705 12.228 4.6186 1 2799200 54340 10986 36566 37385 63135 63135 0.11572533216735792 RPSQATGP 8 Unmodified _RPSQATGP_ 0 0 0 REV__ENST00000483722.1_1_6:41159361-41159613:-|nuORF REV__ENST00000483722.1_1_6:41159361-41159613:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.1447143554688 2 407.214309 812.414065 NaN NaN NaN NaN NaN NaN NaN 12.28 1 9.7982 9.2982 10.298 -2.482 0 0 0 0.97444 1 6203 6203 2.5775 0 1 + 54341 27747 36567 37386 63136 63136 0.0003548551505900832 RPSQNLLQL 9 Unmodified _RPSQNLLQL_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8113403320312 2 534.811648 1067.60874 0.3582 0.00019157 1.3596 0.00072712 1.7178 0.00091868 534.8123973842766 53.364 0.30317 52.912 52.742 53.046 -0.45173 40 14 4 0 0 0 0.13231 1 28832 28832 29.841 6.0508 1 8915500 54342 2266 36568 37387 63137 63137 0.07764236600178265 RPSQNLLQL 9 Unmodified _RPSQNLLQL_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8118896484375 2 534.811648 1067.60874 0.3344 0.00017884 1.2284 0.00065697 1.5628 0.00083581 534.8123924034824 53.017 0.35383 52.953 52.761 53.115 -0.063423 60 17 4 0 0 0 0.05483 2 28674 28674;28773 43.772 7.2662 1 30567000 54343 2266 36568 37387 63138;63139 63138 0.07764236600178265 RPSQNLLQL 9 Unmodified _RPSQNLLQL_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;nc|ENSG00000104973|Q71SY5-6|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8173217773438 2 534.811648 1067.60874 1.2817 0.00068547 3.3782 0.0018067 4.6599 0.0024922 534.8136554538155 58.461 0.50937 52.386 52.109 52.618 -6.0745 58 27 3 0 0 0 0.19361 1 37481 37481 23.79 5.4167 1 62742000 54344 2266 36568 37387 63140 63140 0.07764236600178265 RPSRASPL 8 Unmodified _RPSRASPL_ 0 0 0 REV__ENST00000476846.1_7:111503332-111846439:-|nuORF REV__ENST00000476846.1_7:111503332-111846439:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2595520019531 2 442.259051 882.503549 -0.2835 -0.00012538 0.67895 0.00030027 0.39545 0.00017489 442.259191800714 18.803 0.19302 18.803 18.703 18.896 0 25 13 3 0 0 0 0.79783 1 9352 9352 7.9102 0 1 3504900 + 54345 27599 36569 37388 63141 63141 0.05759740194423557 RPSRASPL 8 Unmodified _RPSRASPL_ 0 0 0 REV__ENST00000476846.1_7:111503332-111846439:-|nuORF REV__ENST00000476846.1_7:111503332-111846439:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2587890625 2 442.259051 882.503549 1.267 0.00056036 -1.2265 -0.00054243 0.040541 1.793E-05 442.2583690178677 20.174 0.6234 17.518 17.275 17.898 -2.6564 130 38 5 0 0 0 0.60622 1 10725 10725 25.399 0 1 521870000 + 54346 27599 36569 37388 63142 63142 0.05759740194423557 RPSRASPL 8 Unmodified _RPSRASPL_ 0 0 0 REV__ENST00000476846.1_7:111503332-111846439:-|nuORF REV__ENST00000476846.1_7:111503332-111846439:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.259051 882.503549 -0.2835 -0.00012538 0.67895 0.00030027 0.39545 0.00017489 442.259191800714 18.803 0.19302 18.803 18.703 18.896 0 0.036674 -7.435E-05 NaN 7.9102 25 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3504900 + 54347 27599 36569 37388 0.05759740194423557 RPSRASPL 8 Unmodified _RPSRASPL_ 0 0 0 REV__ENST00000476846.1_7:111503332-111846439:-|nuORF REV__ENST00000476846.1_7:111503332-111846439:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 442.259051 882.503549 -0.59921 -0.00026501 0.78062 0.00034523 0.1814 8.0227E-05 442.2594002368991 18.706 0.22152 18.73 18.619 18.841 0.023106 -0.036674 1.5572E-05 NaN 7.9102 94 33 4 NaN NaN NaN NaN 0 NaN NaN 0 16125000 + 54348 27599 36569 37388 0.05759740194423557 RPSRLASIL 9 Unmodified _RPSRLASIL_ 0 0 0 REV__ENST00000258796.11_1_7:2701400-2702321:+|nuORF REV__ENST00000258796.11_1_7:2701400-2702321:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8179626464844 2 506.816733 1011.61891 0.9356 0.00047418 -0.21307 -0.00010799 0.72253 0.00036619 506.81674648161106 32.184 0.33298 28.328 28.161 28.494 -3.8562 33 19 2 0 0 0 0.34999 1 18266 18266 14.838 0.93222 1 33897000 + 54349 24947 36570 37389 63143 63143 0.11356844325405291 RPSRLTVKY 9 Unmodified _RPSRLTVKY_ 0 0 0 ENSG00000166143|ENST00000299174|PPP1R14D ENSG00000166143|ENST00000299174|PPP1R14D ENSG00000166143|ENST00000299174|PPP1R14D MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8928833007812 3 373.892619 1118.65603 0.81293 0.00030395 0.039127 1.4629E-05 0.85206 0.00031858 373.8925935697767 22.84 0.42236 20.062 19.828 20.25 -2.7784 103 30 4 0 0 0 0.12357 2 12326 12210;12326 30.703 5.441 1 70712000 54350 7435 36571 37390 63144;63145 63145 0.10144515871184012 RPSRLTVKY 9 Unmodified _RPSRLTVKY_ 0 0 0 ENSG00000166143|ENST00000299174|PPP1R14D ENSG00000166143|ENST00000299174|PPP1R14D ENSG00000166143|ENST00000299174|PPP1R14D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 373.892619 1118.65603 0.085223 3.1864E-05 0.58945 0.00022039 0.67467 0.00025226 373.8926907439481 20.324 0.22982 20.334 20.221 20.451 0.010551 0.13632 0.00049193 NaN 30.703 33 13 4 NaN NaN NaN NaN 0 NaN NaN 0 3724400 54351 7435 36571 37390 0.10144515871184012 RPSSFQSRM 9 Unmodified _RPSSFQSRM_ 0 0 0 nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR nc|ENSG00000060491|Q9NZT2-2|OGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8511047363281 3 365.850314 1094.52911 1.7999 0.00065849 2.9078 0.0010638 4.7077 0.0017223 366.18621494185885 20.683 0.20878 17.99 17.901 18.11 -2.693 17 14 2 0 0 0 0.21643 1 11005 11005 15.739 2.1238 1 2398600 54352 826 36572 37391 63146 63146 -0.014371533454550445 RPSSGHGI 8 Unmodified _RPSSGHGI_ 0 0 0 REV__ENST00000253063.3_1_1:28598867-28599098:+|nuORF REV__ENST00000253063.3_1_1:28598867-28599098:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2385864257812 2 405.714476 809.4144 -0.58486 -0.00023729 0.79458 0.00032237 0.20972 8.5086E-05 405.71463670382644 18.33 0.13951 18.33 18.26 18.4 0 38 21 3 0 0 0 8.7369 1 9095 9095 5.7604 0.52976 1 1392600 + 54353 24897 36573 37392 63147 63147 0.00206905234892929 RPSSHPLIF 9 Unmodified _RPSSHPLIF_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3;ENST00000490192.1_1_10:98303781-98312696:-|nuORF ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8662109375 3 351.866181 1052.57671 0.14063 4.9483E-05 0.58124 0.00020452 0.72187 0.000254 351.86639913555274 40.946 0.26141 40.945 40.792 41.053 -0.0017891 22 12 2 0 0 0 0.30202 1 21859 21859 12.175 7.2777 1 2608800 54354 1205 36574 37393 63148 63148 0.052528689170458165 RPSSHPLIF 9 Unmodified _RPSSHPLIF_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3;ENST00000490192.1_1_10:98303781-98312696:-|nuORF ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2955932617188 2 527.295633 1052.57671 0.21877 0.00011535 -0.26818 -0.00014141 -0.049413 -2.6055E-05 527.2954927323148 40.945 0.34405 40.943 40.792 41.136 -0.0017929 37 16 3 0 0 0 0.07087 1 21868 21868 39.95 20.511 1 7424100 54355 1205 36574 37393 63149 63149 0.052528689170458165 RPSSKKTYSL 10 Unmodified _RPSSKKTYSL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5564880371094 3 389.555784 1165.64552 0.48794 0.00019008 3.8244 0.0014898 4.3123 0.0016799 389.55618938702077 16.346 0.19328 13.789 13.681 13.874 -2.557 62 23 4 0 0 0 0.34435 1 8453 8453 27.129 17.885 1 4259900 54356 5031 36575 37394 63150 63150 0.06932488426082273 RPSSQYIVAL 10 Unmodified _RPSSQYIVAL_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5;ENST00000437413.2_1_16:21498935-21531497:-|nuORF;nc|ENSG00000260727|Q8MH63|SLC7A5P1;nc|ENSG00000258186|Q9GIP4-1|SLC7A5P2;nc|ENSG00000258186|Q9GIP4|SLC7A5P2;ENST00000522841.6_1_16:21495824-21531728:-|nuORF ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3219604492188 2 567.319306 1132.62406 0.63975 0.00036294 -0.070253 -3.9856E-05 0.56949 0.00032309 567.3194598318681 53.72 0.33274 53.268 53.128 53.461 -0.45173 42 16 4 0 0 0 0.6067 1 29166 29166 10.8 1.4164 1 10653000 54357 2120 36576 37395 63151 63151 0.06305103397380662 RPSSQYIVAL 10 Unmodified _RPSSQYIVAL_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5;ENST00000437413.2_1_16:21498935-21531497:-|nuORF;nc|ENSG00000260727|Q8MH63|SLC7A5P1;nc|ENSG00000258186|Q9GIP4-1|SLC7A5P2;nc|ENSG00000258186|Q9GIP4|SLC7A5P2;ENST00000522841.6_1_16:21495824-21531728:-|nuORF ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MSMS AL20221201_MKP_PDAC_01 4 567.3209838867188 2 567.319306 1132.62406 NaN NaN NaN NaN NaN NaN NaN 58.743 1 52.668 52.168 53.168 -6.0745 0 0 0 0.36315 1 37660 37660 33.445 4.3633 1 54358 2120 36576 37395 63152 63152 0.06305103397380662 RPSSWRQEKI 10 Unmodified _RPSSWRQEKI_ 0 0 0 ENSG00000127445|ENST00000247970|PIN1;ENST00000380889.6_1_19:9947469-9960242:+|nuORF ENSG00000127445|ENST00000247970|PIN1 ENSG00000127445|ENST00000247970|PIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.5707702636719 3 429.570316 1285.68912 1.3257 0.00056949 -0.20571 -8.8365E-05 1.12 0.00048112 429.57024640925033 21.57 0.32621 18.835 18.669 18.995 -2.7348 74 23 4 0 0 0 0.35999 1 11508 11508 23.964 9.7934 1 8283100 54359 4008 36577 37396 63153 63153 0.057700979232322425 RPSTFMLRA 9 Unmodified _RPSTFMLRA_ 0 0 0 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2006225585938 3 360.199054 1077.57533 NaN NaN NaN NaN NaN NaN NaN 16.072 1 16.077 15.577 16.577 0.0050564 0 0 0 0.6557 1 8041 8041 7.1017 1.3183 1 + 54360 20725 36578 37397 63154 63154 0.039649115566362525 RPSTPHTITL 10 Unmodified _RPSTPHTITL_ 0 0 0 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8169555664062 2 561.81693 1121.61931 NaN NaN NaN NaN NaN NaN NaN 33.603 1 33.443 32.943 33.943 -0.15918 0 0 0 0.6416 1 17531 17531 19.362 3.2128 1 54361 3053 36579 37398 63155 63155 0.06336219254603748 RPSTRIQQQL 10 Unmodified _RPSTRIQQQL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.9046325683594 3 409.570316 1225.68912 NaN NaN NaN NaN NaN NaN NaN 22.436 1 22.453 21.953 22.953 0.01749 0 0 0 0.59152 1 11522 11522 21.799 8.9435 1 54362 1888 36580 37399 63156 63156 0.08530097923221547 RPSTRIQQQL 10 Unmodified _RPSTRIQQQL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.5698852539062 3 409.570316 1225.68912 0.037471 1.5347E-05 0.84293 0.00034524 0.8804 0.00036059 409.5707680511373 25.445 0.35949 22.562 22.371 22.73 -2.8831 51 19 4 0 0 0 0.42967 1 13863 13863 19.987 0 1 15142000 54363 1888 36580 37399 63157 63157 0.08530097923221547 RPSTRIQQQL 10 Unmodified _RPSTRIQQQL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8514404296875 2 613.851835 1225.68912 -0.19864 -0.00012194 1.0523 0.00064597 0.85368 0.00052403 613.8523325792745 25.449 0.25203 22.566 22.425 22.677 -2.8831 19 13 2 0 0 0 0.36277 1 13917 13917 16.149 6.0752 1 3549600 54364 1888 36580 37399 63158 63158 0.08530097923221547 RPSVLIVTY 9 Unmodified _RPSVLIVTY_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3131103515625 2 524.313492 1046.61243 -0.38164 -0.0002001 -0.56023 -0.00029374 -0.94188 -0.00049384 524.3130590619402 55.976 0.19941 55.498 55.36 55.559 -0.47798 14 9 2 0 0 0 0.21643 1 30358 30358 21.537 5.6898 1 2386700 54365 2472 36581 37400 63159 63159 0.09098906374060789 RPSVLIVTY 9 Unmodified _RPSVLIVTY_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3136596679688 2 524.313492 1046.61243 -0.19436 -0.00010191 -0.22049 -0.0001156 -0.41484 -0.00021751 524.313343173346 55.582 0.34903 55.513 55.317 55.666 -0.068737 50 17 4 0 0 0 0.036857 2 30259 30155;30259 51.63 26.23 1 38868000 54366 2472 36581 37400 63160;63161 63161 0.09098906374060789 RPSVLIVTY 9 Unmodified _RPSVLIVTY_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3146362304688 2 524.313492 1046.61243 1.1695 0.00061319 -0.58733 -0.00030795 0.58218 0.00030524 524.3130754314121 61.611 0.59521 55.436 55.228 55.823 -6.1757 44 30 2 0 0 0 0.085319 2 39793 39670;39793 36.506 16.053 1 51685000 54367 2472 36581 37400 63162;63163 63163 0.09098906374060789 RPSVLRGDHL 10 Unmodified _RPSVLRGDHL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8881530761719 3 383.887756 1148.64144 0.69676 0.00026748 0.56824 0.00021814 1.265 0.00048562 383.8879167747533 26.274 0.25979 23.323 23.199 23.459 -2.9511 28 14 3 0 0 0 0.39689 1 14469 14469 21.799 4.6866 1 7304500 54368 6383 36582 37401 63164 63164 0.07306443723041411 RPSVRNGQL 9 Unmodified _RPSVRNGQL_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7947387695312 2 513.793789 1025.57303 0.56396 0.00028976 -0.041976 -2.1567E-05 0.52199 0.00026819 513.7937901339076 18.295 0.21524 15.674 15.54 15.755 -2.6215 21 15 2 0 0 0 0.38785 1 9610 9610 13.042 2.8591 1 2042400 54369 16114;16115 36583 37402 63165 63165 0.06126199143204758 RPSVRSVL 8 Unmodified _RPSVRSVL_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.283447265625 2 457.282526 912.550499 0.48322 0.00022097 -0.2459 -0.00011244 0.23733 0.00010852 457.2823967907045 26.843 0.17763 26.872 26.757 26.935 0.028664 13 7 2 0 0 0 0.62219 1 13933 13933 24.021 8.1734 1 6871100 54370 2549;3643 36584 37403 63166 63166 0.09072599745559273 RPSYRKILNDL 11 Unmodified _RPSYRKILNDL_ 0 0 0 ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1;ENST00000480189.5_1_2:208424955-208436489:+|nuORF;CREB1|p.Q216Hfs*9|1|0.03|ENSG00000118260|chr2:207575370-207575383|CAGCCGGGTACTAC/-|frameshift_variant;nc|ENSG00000118260|P16220-3|CREB1 ENSG00000118260|ENST00000353267|CREB1 ENSG00000118260|ENST00000353267|CREB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.9331970214844 3 458.933254 1373.77793 NaN NaN NaN NaN NaN NaN NaN 38.722 1 38.733 38.233 39.233 0.011452 0 0 0 0.93627 1 20602 20602 5.1984 1.3525 1 54371 3363 36585 37404 63167 63167 0.1059951316290153 RPTDKPLRL 9 Unmodified _RPTDKPLRL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8926696777344 3 365.892619 1094.65603 -0.32294 -0.00011816 0.24048 8.799E-05 -0.082465 -3.0173E-05 365.89269223204155 22.913 0.44753 22.913 22.754 23.202 0 83 24 5 0 0 0 0.0086209 2 11717 11619;11717 73.196 34.582 1 45523000 54372 1933;6461 36586 37405 63168;63169 63169 0.11248515871170639 RPTDKPLRL 9 Unmodified _RPTDKPLRL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8921508789062 3 365.892619 1094.65603 -0.080242 -2.936E-05 -0.92274 -0.00033763 -1.003 -0.00036699 365.8922395767887 22.906 0.35809 22.919 22.736 23.095 0.012396 57 17 4 0 0 0 0.0082353 2 11615 11615;11716 78.06 36.105 1 74228000 54373 1933;6461 36586 37405 63170;63171 63170 0.11248515871170639 RPTDKPLRL 9 Unmodified _RPTDKPLRL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8928527832031 3 365.892619 1094.65603 0.10164 3.719E-05 -0.36389 -0.00013314 -0.26224 -9.5953E-05 365.89249999869674 22.805 0.40447 22.823 22.588 22.992 0.01749 65 24 4 0 0 0 0.0086904 3 11683 11645;11683;11785 87.258 45.303 1 129020000 54374 1933;6461 36586 37405 63172;63173;63174 63173 0.11248515871170639 RPTDKPLRL 9 Unmodified _RPTDKPLRL_ 0 0 0 ENSG00000101210|ENST00000217182|EEF1A2;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000156508|ENST00000309268|EEF1A1;nc|ENSG00000196205|Q5VTE0|EEF1A1P5 ENSG00000101210|ENST00000217182|EEF1A2;ENSG00000156508|ENST00000309268|EEF1A1 ENSG00000156508|ENST00000309268|EEF1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3345336914062 2 548.33529 1094.65603 -0.01534 -8.4115E-06 -0.56446 -0.00030952 -0.5798 -0.00031793 548.3349983992847 25.096 0.48501 22.213 21.959 22.444 -2.8831 116 43 3 0 0 0 0.047714 2 13599 13599;13710 45.74 14.969 1 73704000 54375 1933;6461 36586 37405 63175;63176 63175 0.11248515871170639 RPTDRNPDGI 10 Unmodified _RPTDRNPDGI_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2969970703125 2 570.791444 1139.56833 1.297 0.00074034 0.14908 8.5091E-05 1.4461 0.00082543 570.7913448331508 90.866 0.77103 84.691 84.257 85.028 -6.1757 92 45 4 0 0 0 0.55245 1 60057 60057 13.615 0.5724 1 23232000 54376 3642 36587 37406 63177 63177 0.004132702097649599 RPTDVAISF 9 Unmodified _RPTDVAISF_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.27197265625 2 503.271824 1004.5291 1.0676 0.00053728 0.47337 0.00023823 1.5409 0.00077551 503.2716282689586 51.247 0.52623 51.247 51.014 51.54 0 71 24 5 0 0 0 0.047788 2 28265 28265;28378 45.7 11.298 1 59641000 54377 739 36588 37407 63178;63179 63178 0.02701169926183411 RPTDVAISF 9 Unmodified _RPTDVAISF_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2715148925781 2 503.271824 1004.5291 -0.34577 -0.00017402 0.18394 9.2572E-05 -0.16183 -8.1444E-05 503.2718258440485 51.727 0.39726 51.293 51.097 51.494 -0.43367 57 20 4 0 0 0 0.020973 2 27843 27843;27954 62.573 20.733 1 151090000 54378 739 36588 37407 63180;63181 63180 0.02701169926183411 RPTDVAISF 9 Unmodified _RPTDVAISF_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2725219726562 2 503.271824 1004.5291 1.028 0.00051739 0.072771 3.6623E-05 1.1008 0.00055401 503.2717307236356 57.427 0.60098 51.4 51.049 51.65 -6.0275 86 32 3 0 0 0 0.11784 2 36543 36543;36666 31.268 3.6395 1 569060000 54379 739 36588 37407 63182;63183 63182 0.02701169926183411 RPTDVVLEV 9 Unmodified _RPTDVVLEV_ 0 0 0 ENST00000509182.1_1_5:61688751-61699599:-|nuORF;ENSG00000086189|ENST00000199320|DIMT1 ENST00000509182.1_1_5:61688751-61699599:-|nuORF ENST00000509182.1_1_5:61688751-61699599:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2938232421875 2 514.292756 1026.57096 0.35346 0.00018178 0.21585 0.00011101 0.56931 0.00029279 514.2928859689666 50.6 0.26725 50.6 50.456 50.724 0 21 12 2 0 0 0 0.078314 1 27876 27876 38.176 5.8701 1 6226500 54380 1431 36589 37408 63184 63184 0.058737256147196604 RPTDYFAEM 9 Oxidation (M) _RPTDYFAEM(Oxidation (M))_ RPTDYFAEM(1) RPTDYFAEM(96) 0 0 1 ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2 ENST00000463906.1_1_1:43630116-43636618:-|nuORF ENST00000463906.1_1_1:43630116-43636618:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2486572265625 2 573.250231 1144.48591 -0.27754 -0.0001591 0.33797 0.00019374 0.060429 3.4641E-05 573.2501429665357 33.877 0.24234 33.877 33.728 33.97 0 30 11 4 0 0 0 0.0082353 1 17782 17782 96.111 63.805 1 7292000 54381 3298 36590 37409 63185 63185 587 -0.08055387913418599 RPTDYFAEM 9 Oxidation (M) _RPTDYFAEM(Oxidation (M))_ 0 0 1 ENST00000463906.1_1_1:43630116-43636618:-|nuORF;ENSG00000117395|ENST00000236051|EBNA1BP2 ENST00000463906.1_1_1:43630116-43636618:-|nuORF ENST00000463906.1_1_1:43630116-43636618:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.250231 1144.48591 -0.099378 -5.6968E-05 1.6854 0.00096614 1.586 0.00090917 573.2507299651679 34.037 0.14566 33.846 33.744 33.89 -0.19131 -0.015609 0.0012587 NaN 96.111 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 393520 54382 3298 36590 37409 587 -0.08055387913418599 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8814086914062 3 392.881725 1175.62335 -0.17801 -6.9938E-05 -3.0425 -0.0011953 -3.2205 -0.0012653 392.88172115738604 37.666 0.28769 37.683 37.572 37.859 0.01704 43 13 4 0 0 0 0.091924 1 19996 19996 27.088 5.5514 1 8845300 54383 16209;9884;15895 36591 37410 63186 63186 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8822631835938 3 392.881725 1175.62335 1.181 0.00046399 -0.3593 -0.00014116 0.82169 0.00032283 392.8816873466116 42.036 0.50409 37.351 37.109 37.613 -4.6846 123 31 5 0 0 0 0.078314 2 25230 25230;25364 29.437 12.389 1 293670000 54384 16209;9884;15895 36591 37410 63187;63188 63187 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8191528320312 2 588.81895 1175.62335 0.8356 0.00049202 -0.81457 -0.00047964 0.021031 1.2384E-05 588.818660968442 41.989 0.46719 37.305 37.125 37.592 -4.6846 96 29 4 0 0 0 0.10247 2 25319 25319;25451 32.786 9.6373 1 119760000 54385 16209;9884;15895 36591 37410 63189;63190 63189 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20221201_MKP_PDAC_01 4 392.8828125 3 392.881725 1175.62335 NaN NaN NaN NaN NaN NaN NaN 54.828 1 48.963 48.463 49.463 -5.8653 0 0 0 0.16996 1 34829 34829 26.021 2.2196 1 54386 16209;9884;15895 36591 37410 63191 63191 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20221201_MKP_PDAC_01 4 392.8832702636719 3 392.881725 1175.62335 NaN NaN NaN NaN NaN NaN NaN 55.55 1 49.629 49.129 50.129 -5.9211 0 0 0 0.21752 1 35372 35372 29.437 0.94265 1 54387 16209;9884;15895 36591 37410 63192 63192 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20221201_MKP_PDAC_01 4 392.8822326660156 3 392.881725 1175.62335 NaN NaN NaN NaN NaN NaN NaN 55.804 1 49.883 49.383 50.383 -5.9211 0 0 0 0.12961 1 35552 35552 39.213 16.555 1 54388 16209;9884;15895 36591 37410 63193 63193 0.042559854766750504 RPTFRQMQL 9 Unmodified _RPTFRQMQL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 588.81895 1175.62335 0.030013 1.7672E-05 -0.34843 -0.00020516 -0.31841 -0.00018749 588.8186728487383 37.682 0.26727 37.699 37.572 37.839 0.01704 0.197 0.00038759 NaN 32.786 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 4572100 54389 16209;9884;15895 36591 37410 0.042559854766750504 RPTFRQMQL 9 Oxidation (M) _RPTFRQM(Oxidation (M))QL_ RPTFRQM(1)QL RPTFRQM(59)QL 0 0 1 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;FLNB-SLMAP|3|fusion;FLNB-SLMAP|2|fusion;FLNB-SLMAP|8|fusion;FLNB-SLMAP|4|fusion;FLNB-SLMAP|1|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000196924|P21333-2|FLNA;FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8158569335938 2 596.816407 1191.61826 -0.015813 -9.4373E-06 0.011316 6.7534E-06 -0.0044972 -2.684E-06 596.816553610483 27.963 0.55006 24.815 24.547 25.097 -3.1482 79 29 3 0 0 0 0.024189 1 15440 15440 59.368 37.831 1 49749000 54390 16209;9884;15895 36591 37411 63194 63194 1586 0.03011681614043482 RPTFSGQQIF 10 Unmodified _RPTFSGQQIF_ 0 0 0 ENSG00000163623|ENST00000295886|NKX6-1;ENSG00000148826|ENST00000368592|NKX6-2 ENSG00000163623|ENST00000295886|NKX6-1 ENSG00000163623|ENST00000295886|NKX6-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2091674804688 3 394.208495 1179.60366 1.3085 0.00051584 -0.07708 -3.0386E-05 1.2315 0.00048545 394.2084327890584 19.797 0.56502 17.141 16.89 17.455 -2.6564 130 35 5 0 0 0 0.54684 1 10597 10597 8.4443 0.96724 1 117180000 54391 7030 36592 37412 63195 63195 0.021039327375547145 RPTGLHGK 8 Unmodified _RPTGLHGK_ 0 0 0 REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF REV__ENST00000465431.6_1_X:48935109-48935754:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.9041137695312 2 433.253769 864.492984 -0.3607 -0.00015628 0.60872 0.00026373 0.24802 0.00010746 433.2542724735062 25.762 0.29034 25.762 25.613 25.904 0 29 13 3 0 0 0 8.7369 1 13247 13247 6.2058 2.2614 1 2460400 + 54392 27392 36593 37413 63196 63196 0.05531757539984028 RPTIHKLK 8 Unmodified _RPTIHKLK_ 0 0 0 nc|ENSG00000105875|A4D1P6-2|WDR91;ENSG00000105875|ENST00000354475|WDR91;nc|ENSG00000105875|A4D1P6-3|WDR91;ENST00000466182.5_1_7:134882699-134896254:-|nuORF nc|ENSG00000105875|A4D1P6-2|WDR91 nc|ENSG00000105875|A4D1P6-2|WDR91 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8223266601562 2 496.821818 991.629084 -0.012478 -6.1992E-06 1.1531 0.00057288 1.1406 0.00056668 496.8223617192537 37.334 0.28996 37.356 37.174 37.464 0.021545 37 12 4 0 0 0 0.78031 1 19869 19869 10.074 1.4806 1 13596000 54393 2374 36594 37414 63197 63197 0.13293452050641008 RPTKLKSL 8 Unmodified _RPTKLKSL_ 0 0 0 ENSG00000135114|ENST00000257570|OASL;nc|ENSG00000135114|Q15646-3|OASL;nc|ENSG00000135114|Q15646-2|OASL;ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 ENSG00000135114|ENST00000257570|OASL;ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.8079223632812 2 471.808377 941.6022 0.10771 5.0821E-05 1.4929 0.00070436 1.6006 0.00075518 471.8092542578374 16.134 0.19816 13.577 13.452 13.65 -2.557 63 35 2 0 0 0 0.46468 1 8291 8291 38.176 7.539 1 7330100 54394 16067;16068;2781;4672 36595 37415 63198 63198 0.1290634343945385 RPTLMKRF 8 Unmodified _RPTLMKRF_ 0 0 0 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 MSMS AL20221201_MKP_PDAC_01 4 350.2083129882812 3 350.207661 1047.60115 NaN NaN NaN NaN NaN NaN NaN 12.073 1 9.5913 9.0913 10.091 -2.482 0 0 0 0.95607 1 6090 6090 6.7232 2.7788 1 + 54395 20336 36596 37416 63199 63199 0.07925805798913643 RPTLPVKSL 9 Unmodified _RPTLPVKSL_ 0 0 0 nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF nc|ENSG00000055070|Q7Z422-2|SZRD1 nc|ENSG00000055070|Q7Z422-2|SZRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8213500976562 2 505.821484 1009.62842 0.0026613 1.3461E-06 0.55829 0.0002824 0.56095 0.00028374 505.8217852980314 37.416 0.29157 37.438 37.285 37.576 0.021545 32 13 3 0 0 0 0.010301 1 19825 19825 79.596 7.674 1 8380500 54396 771 36597 37417 63200 63200 0.12398612610945747 RPTLPVKSL 9 Unmodified _RPTLPVKSL_ 0 0 0 nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF nc|ENSG00000055070|Q7Z422-2|SZRD1 nc|ENSG00000055070|Q7Z422-2|SZRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.8225708007812 2 505.821484 1009.62842 1.5599 0.00078902 0.38097 0.0001927 1.9408 0.00098172 505.8217483605595 41.816 0.4268 37.208 37.014 37.441 -4.6079 63 26 3 0 0 0 0.0099157 2 25246 25105;25246 80.676 21.997 1 26206000 54397 771 36597 37417 63201;63202 63202 0.12398612610945747 RPTLRRWE 8 Unmodified _RPTLRRWE_ 0 0 0 ENST00000546253.5_1_11:62649261-62650084:+|nuORF;ENST00000537839.5_1_11:62649261-62650080:+|nuORF ENST00000546253.5_1_11:62649261-62650084:+|nuORF ENST00000546253.5_1_11:62649261-62650084:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3179321289062 2 557.317432 1112.62031 0.28322 0.00015784 0.87283 0.00048644 1.156 0.00064428 557.3178811811068 14.705 0.13044 12.203 12.137 12.267 -2.5029 29 21 2 0 0 0 0.77186 1 7481 7481 10.824 0 1 2950600 54398 14996 36598 37418 63203 63203 0.0685047841418509 RPTMPGEVRME 11 Unmodified _RPTMPGEVRME_ 0 0 0 ENST00000437099.6_1_17:9819894-9820095:-|nuORF ENST00000437099.6_1_17:9819894-9820095:-|nuORF ENST00000437099.6_1_17:9819894-9820095:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 91.409 1 91.409 90.909 91.909 0 0 0 0 0.94201 1 50553 50553 0.36667 0 1 54399 13342 36599 37419 63204 63204 -0.016720166743880327 RPTNANLTL 9 Unmodified _RPTNANLTL_ 0 0 0 ENST00000490635.1_1_X:54026257-54040884:-|nuORF;nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8 ENST00000490635.1_1_X:54026257-54040884:-|nuORF ENST00000490635.1_1_X:54026257-54040884:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2833251953125 2 500.282723 998.550893 0.73012 0.00036527 0.66119 0.00033078 1.3913 0.00069605 500.2830577730853 39.627 0.32735 35.177 35.042 35.37 -4.4509 37 20 2 0 0 0 0.036857 1 23587 23587 51.63 3.284 1 13731000 54400 8273 36600 37420 63205 63205 0.051559746747557256 RPTNANLTL 9 Unmodified _RPTNANLTL_ 0 0 0 ENST00000490635.1_1_X:54026257-54040884:-|nuORF;nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8 ENST00000490635.1_1_X:54026257-54040884:-|nuORF ENST00000490635.1_1_X:54026257-54040884:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 500.282723 998.550893 0.73012 0.00036527 0.66119 0.00033078 1.3913 0.00069605 500.2830577730853 39.627 0.32735 35.177 35.042 35.37 -4.4509 -0.14162 0.00043107 NaN 51.63 37 20 2 NaN NaN NaN NaN 0 NaN NaN 0 13731000 54401 8273 36600 37420 0.051559746747557256 RPTNDKQYL 9 Unmodified _RPTNDKQYL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7986450195312 2 567.798737 1133.58292 NaN NaN NaN NaN NaN NaN NaN 19.078 1 19.078 18.578 19.578 0 0 0 0 0.77016 1 9522 9522 6.7232 3.7279 1 54402 6889 36601 37421 63206 63206 0.021473423578981965 RPTNDKQYL 9 Unmodified _RPTNDKQYL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MSMS AL20221201_MKP_PDAC_01 4 378.8686828613281 3 378.86825 1133.58292 NaN NaN NaN NaN NaN NaN NaN 20.174 1 17.517 17.017 18.017 -2.6564 0 0 0 0.21752 1 10734 10734 29.437 21.828 1 54403 6889 36601 37421 63207 63207 0.021473423578981965 RPTRLPQIRL 10 Unmodified _RPTRLPQIRL_ 0 0 0 REV__nc|ENSG00000105426|Q13332-4|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD REV__nc|ENSG00000105426|Q13332-4|PTPRS MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2679748535156 3 417.266568 1248.77787 1.4121 0.00058921 0.59874 0.00024984 2.0108 0.00083904 417.26681477268517 20.286 0.29508 17.593 17.486 17.781 -2.693 26 17 2 0 0 0 0.59286 1 10803 10803 11.518 3.5725 1 2281900 + 54404 18424;21179 36602 37422 63208 63208 0.16343557953541676 RPTSVDPAL 9 Unmodified _RPTSVDPAL_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2642211914062 2 478.263999 954.513445 -0.74168 -0.00035472 1.1933 0.00057072 0.45162 0.000216 478.2644667090399 32.167 0.25584 32.167 32.023 32.278 0 29 12 3 0 0 0 0.091924 1 16768 16768 34.932 4.2955 1 6485900 54405 2311 36603 37423 63209 63209 0.03436883409131042 RPTSVDPAL 9 Unmodified _RPTSVDPAL_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000599253.1_1_19:48248882-48249496:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2646179199219 2 478.263999 954.513445 0.56921 0.00027223 1.0668 0.00051023 1.6361 0.00078247 478.2646687882711 36.301 0.36443 32.108 31.914 32.278 -4.1928 34 21 2 0 0 0 0.044296 1 21124 21124 47.594 11.467 1 19166000 54406 2311 36603 37423 63210 63210 0.03436883409131042 RPTVGSRL 8 Unmodified _RPTVGSRL_ 0 0 0 REV__ENST00000399136.5_1_21:37834011-37914886:-|nuORF REV__ENST00000399136.5_1_21:37834011-37914886:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.2686157226562 2 443.266876 884.519199 NaN NaN NaN NaN NaN NaN NaN 21.113 1 18.42 17.92 18.92 -2.693 0 0 0 0.92941 1 11278 11278 14.838 0 1 + 54407 26577 36604 37424 63211 63211 0.07232026711460549 RPTWVSAL 8 Unmodified _RPTWVSAL_ 0 0 0 REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2637634277344 2 465.263802 928.513051 -0.14197 -6.6055E-05 -1.5703 -0.0007306 -1.7123 -0.00079665 465.2637907438909 39.564 0.27854 39.267 39.133 39.412 -0.29716 17 12 2 0 0 0 0.74163 1 20887 20887 13.508 2.684 1 1442200 + 54408 24960 36605 37425 63212 63212 0.04593508479945285 RPTWVSAL 8 Unmodified _RPTWVSAL_ 0 0 0 REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF REV__ENST00000260356.5_1_15:39887667-39888120:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 465.263802 928.513051 -0.14197 -6.6055E-05 -1.5703 -0.0007306 -1.7123 -0.00079665 465.2637907438909 39.564 0.27854 39.267 39.133 39.412 -0.29716 0 0 NaN 13.508 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1442200 + 54409 24960 36605 37425 0.04593508479945285 RPVAPSGTAL 10 Unmodified _RPVAPSGTAL_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214 nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7802429199219 2 484.779816 967.545079 1.2533 0.00060755 0.1232 5.9723E-05 1.3765 0.00066728 484.7797736393572 33.614 0.33607 29.629 29.488 29.824 -3.9853 33 18 2 0 0 0 0.25982 2 19371 19246;19371 29.841 1.3537 1 11770000 54410 16175 36606 37426 63213;63214 63214 0.06000876163091107 RPVAVRQP 8 Unmodified _RPVAVRQP_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7839965820312 2 461.782693 921.550834 NaN NaN NaN NaN NaN NaN NaN 19.639 1 19.647 19.147 20.147 0.0078487 0 0 0 0.96305 1 9996 9996 7.9102 1.187 1 54411 748 36607 37427 63215 63215 0.08692019465422618 RPVDLEKDDY 10 Unmodified _RPVDLEKDDY_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.2066955566406 3 417.20682 1248.59863 -0.59901 -0.00024991 1.2053 0.00050285 0.60626 0.00025293 417.54182622642236 26.396 0.26265 26.396 26.246 26.508 0 20 12 2 0 0 0 0.40046 1 13548 13548 19.144 16.072 1 1910100 54412 2892 36608 37428 63216 63216 -0.015724159157116446 RPVDLEKDDY 10 Unmodified _RPVDLEKDDY_ 0 0 0 ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA ENSG00000112406|ENST00000367658|HECA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.3057861328125 2 625.306592 1248.59863 -0.3443 -0.0002153 0.1264 7.9039E-05 -0.21791 -0.00013626 625.3065416976526 26.441 0.26265 26.441 26.246 26.508 0 19 12 2 0 0 0 0.36277 1 13550 13550 23.801 18.069 1 1694600 54413 2892 36608 37428 63217 63217 -0.015724159157116446 RPVDSRLRVV 10 Unmodified _RPVDSRLRVV_ 0 0 0 REV__ENST00000519256.5_1_5:170585477-170669877:+|nuORF REV__ENST00000519256.5_1_5:170585477-170669877:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8653564453125 2 598.864746 1195.71494 -0.15075 -9.0281E-05 0.98602 0.00059049 0.83527 0.00050021 598.865326871006 29.851 0.21209 29.882 29.734 29.946 0.030106 15 7 3 0 0 0 0.70151 1 15579 15579 2.7352 0 1 2530900 + 54414 28258 36609 37429 63218 63218 0.12490992165521675 RPVEEIVTF 9 Unmodified _RPVEEIVTF_ 0 0 0 nc|ENSG00000178802|P34949-2|MPI;ENSG00000178802|ENST00000352410|MPI;ENST00000568840.1_1_15:75182430-75185220:+|nuORF nc|ENSG00000178802|P34949-2|MPI nc|ENSG00000178802|P34949-2|MPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3008422851562 2 545.300581 1088.58661 -0.1849 -0.00010083 -1.0126 -0.00055215 -1.1975 -0.00065298 545.3004061154502 56.196 0.39686 56.196 56.007 56.403 0 53 18 4 0 0 0 0.036857 1 31200 31200 51.63 13.656 1 51374000 54415 8776 36610 37430 63219 63219 0.0458601213174461 RPVELPEVEY 10 Unmodified _RPVELPEVEY_ 0 0 0 nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8212890625 2 615.821878 1229.6292 0.65469 0.00040317 -0.65532 -0.00040356 -0.00062898 -3.8734E-07 615.8213414558834 53.288 0.29964 53.288 53.12 53.42 0 31 12 3 0 0 0 0.078742 1 29502 29502 51.415 14.909 1 6934800 54416 10461 36611 37431 63220 63220 0.023573624693653983 RPVELPEVEY 10 Unmodified _RPVELPEVEY_ 0 0 0 nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.82177734375 2 615.821878 1229.6292 0.55336 0.00034077 -0.075523 -4.6509E-05 0.47784 0.00029426 615.8213588485652 53.859 0.27964 53.393 53.227 53.507 -0.46664 22 13 3 0 0 0 0.47869 1 29139 29139 17.443 3.8278 1 2339500 54417 10461 36611 37431 63221 63221 0.023573624693653983 RPVELPEVEY 10 Unmodified _RPVELPEVEY_ 0 0 0 nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 MSMS AL20221201_MKP_PDAC_01 4 615.822021484375 2 615.821878 1229.6292 NaN NaN NaN NaN NaN NaN NaN 59.901 1 53.786 53.286 54.286 -6.1147 0 0 0 0.018269 1 38509 38509 65.474 21.701 1 54418 10461 36611 37431 63222 63222 0.023573624693653983 RPVELPEVEY 10 Unmodified _RPVELPEVEY_ 0 0 0 nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 nc|ENSG00000213859|Q693B1|KCTD11 MSMS AL20221201_MKP_PDAC_01 4 615.8222045898438 2 615.821878 1229.6292 NaN NaN NaN NaN NaN NaN NaN 60.102 1 53.987 53.487 54.487 -6.1147 0 0 0 0.042083 1 38653 38653 59.368 17.413 1 54419 10461 36611 37431 63223 63223 0.023573624693653983 RPVETHQVHEY 11 Unmodified _RPVETHQVHEY_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.5652770996094 3 465.56523 1393.67386 -0.12267 -5.7112E-05 0.059031 2.7483E-05 -0.06364 -2.9629E-05 465.89960777504024 15.531 0.10255 15.531 15.479 15.581 0 52 30 2 0 0 0 0.70147 1 7476 7476 4.1166 3.419 1 807530 54420 8520 36612 37432 63224 63224 -0.0072281366460629215 RPVETHQVHEY 11 Unmodified _RPVETHQVHEY_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.5650634765625 3 465.56523 1393.67386 0.13347 6.214E-05 0.5184 0.00024135 0.65188 0.00030349 465.5655037917744 16.287 0.17045 13.73 13.69 13.86 -2.557 30 20 2 0 0 0 0.34849 1 8423 8423 24.229 21.156 1 3496600 54421 8520 36612 37432 63225 63225 -0.0072281366460629215 RPVETYQVHEY 11 Unmodified _RPVETYQVHEY_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2318420410156 3 474.233369 1419.67828 -0.5025 -0.0002383 0.47937 0.00022733 -0.023125 -1.0967E-05 474.2335845151331 27.517 0.28126 27.517 27.377 27.659 0 46 13 5 0 0 0 0.0057099 2 14144 14144;14243 74.094 67.859 1 33638000 54422 10558 36613 37433 63226;63227 63226 -0.014773492417134548 RPVETYQVHEY 11 Unmodified _RPVETYQVHEY_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 710.8463134765625 2 710.846416 1419.67828 -0.76041 -0.00054053 0.6227 0.00044265 -0.13771 -9.7887E-05 710.8467852705954 27.502 0.24564 27.502 27.392 27.638 0 32 11 4 0 0 0 0.017804 1 14165 14165 70.929 62.183 1 10188000 54423 10558 36613 37433 63228 63228 -0.014773492417134548 RPVETYQVHEY 11 Unmodified _RPVETYQVHEY_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2325134277344 3 474.233369 1419.67828 1.1031 0.00052312 -0.90518 -0.00042927 0.19791 9.3853E-05 474.2327362121458 30.719 0.39138 27.222 26.975 27.366 -3.497 43 18 3 0 0 0 0.027203 2 17282 17282;17389 55.839 47.087 1 72357000 54424 10558 36613 37433 63229;63230 63229 -0.014773492417134548 RPVETYQVHEY 11 Unmodified _RPVETYQVHEY_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 710.8462524414062 2 710.846416 1419.67828 0.85306 0.00060639 -0.027417 -1.9489E-05 0.82564 0.0005869 710.8463869156523 30.693 0.26834 27.196 27.009 27.277 -3.497 19 12 2 0 0 0 3.1071E-15 1 17335 17335 160.97 134.7 1 30011000 54425 10558 36613 37433 63231 63231 -0.014773492417134548 RPVGPGRAL 9 Unmodified _RPVGPGRAL_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7835388183594 2 461.782693 921.550834 1.1454 0.00052892 0.39027 0.00018022 1.5357 0.00070914 461.7827455424677 21.704 0.29465 18.969 18.827 19.122 -2.7348 28 15 2 0 0 0 0.1773 1 11645 11645 25.399 2.2509 1 2853100 54426 6855 36614 37434 63232 63232 0.08692019465422618 RPVGTVQRSEY 11 Unmodified _RPVGTVQRSEY_ 0 0 0 ENST00000377223.5_1_1:10002691-10003325:-|nuORF;ENST00000377213.1_1_1:10002691-10003464:-|nuORF ENST00000377223.5_1_1:10002691-10003325:-|nuORF ENST00000377223.5_1_1:10002691-10003325:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 3 431.229959 1290.66805 -0.44633 -0.00019247 -0.21542 -9.2897E-05 -0.66175 -0.00028537 431.2297292857998 18.144 0.16076 18.144 18.067 18.228 0 31 17 2 0 0 0 0.29974 1 8995 8995 8.7518 6.6658 1 1983800 54427 12516 36615 37435 63233 63233 0.03434087823711707 RPVGTVQRSEY 11 Unmodified _RPVGTVQRSEY_ 0 0 0 ENST00000377223.5_1_1:10002691-10003325:-|nuORF;ENST00000377213.1_1_1:10002691-10003464:-|nuORF ENST00000377223.5_1_1:10002691-10003325:-|nuORF ENST00000377223.5_1_1:10002691-10003325:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2291259765625 3 431.229959 1290.66805 1.0989 0.00047389 -1.2875 -0.00055519 -0.18854 -8.1306E-05 431.22921869028886 19.412 0.21155 16.756 16.638 16.85 -2.6564 26 20 2 0 0 0 0.055321 1 10246 10246 41.567 37.45 1 9109500 54428 12516 36615 37435 63234 63234 0.03434087823711707 RPVHLDQAAF 10 Unmodified _RPVHLDQAAF_ 0 0 0 nc|ENSG00000088930|Q9H0D6-2|XRN2;ENSG00000088930|ENST00000377191|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 nc|ENSG00000088930|Q9H0D6-2|XRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3104248046875 2 577.309272 1152.60399 -0.17189 -9.9232E-05 0.24259 0.00014005 0.070707 4.082E-05 577.3096226684733 34.188 0.1874 33.997 33.917 34.104 -0.19132 9 6 2 0 0 0 0.5933 1 17865 17865 11.495 3.5846 1 682360 54429 1504 36616 37436 63235 63235 0.03379352457386631 RPVIGALGL 9 Unmodified _RPVIGALGL_ 0 0 0 ENSG00000177666|ENST00000336615|PNPLA2;nc|ENSG00000177666|Q96AD5-2|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 ENSG00000177666|ENST00000336615|PNPLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2898254394531 2 448.28982 894.565087 0.67306 0.00030173 0.85063 0.00038133 1.5237 0.00068305 448.2895688509654 62.087 0.272 62.054 61.888 62.16 -0.032787 16 13 2 0 0 0 0.10734 1 33923 33923 32.305 5.4218 1 3101900 54430 8699 36617 37437 63236 63236 0.1135867189370856 RPVIGSSVTY 10 Unmodified _RPVIGSSVTY_ 0 0 0 nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;nc|ENSG00000170266|P16278-2|GLB1 nc|ENSG00000170266|P16278-3|GLB1 nc|ENSG00000170266|P16278-3|GLB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7963256835938 2 539.798206 1077.58186 0.88302 0.00047665 -0.62378 -0.00033672 0.25923 0.00013993 539.7974484348666 42.742 0.24056 38.057 37.969 38.209 -4.6846 26 15 2 0 0 0 0.093652 1 25901 25901 63.961 7.7835 1 10605000 54431 7965 36618 37438 63237 63237 0.0461712798901317 RPVKEVGMY 9 Unmodified _RPVKEVGMY_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7891845703125 2 539.789327 1077.5641 -0.29852 -0.00016114 0.43057 0.00023242 0.13205 7.1279E-05 539.7898074333369 25.561 0.21609 22.678 22.586 22.803 -2.8831 19 11 2 0 0 0 0.18144 1 14044 14044 24.991 14.167 1 4383500 54432 7694;14986 36619 37439 63238 63238 0.028420894625014625 RPVLKGLTF 9 Unmodified _RPVLKGLTF_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.824951171875 2 515.824027 1029.6335 0.58669 0.00030263 0.16684 8.6058E-05 0.75352 0.00038869 515.8240509911521 49.209 0.39413 49.166 48.982 49.376 -0.04369 55 18 4 0 0 0 0.013609 2 26527 26527;26626 70.332 35.4 1 18639000 54433 10258 36620 37440 63239;63240 63239 0.11986916473551901 RPVLKGLTF 9 Unmodified _RPVLKGLTF_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.768310546875 2 515.824027 1029.6335 1.1989 0.00061842 -1.707 -0.0008805 -0.50807 -0.00026207 515.8227922268774 53.969 0.30408 48.104 47.979 48.283 -5.8653 30 17 2 0 0 0 0.14225 1 34295 34295 18.146 3.3081 1 16065000 54434 10258 36620 37440 63241 63241 0.11986916473551901 RPVLLQKL 8 Unmodified _RPVLLQKL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.8266296386719 2 483.826569 965.638586 0.29775 0.00014406 0.22373 0.00010825 0.52148 0.0002523 483.8265967718882 41.052 0.32981 41.05 40.891 41.221 -0.0017929 40 15 4 0 0 0 0.17994 1 21893 21893 77.984 14.421 1 10429000 54435 16188 36621 37441 63242 63242 0.1543922033616809 RPVLPSSESF 10 Unmodified _RPVLPSSESF_ 0 0 0 ENSG00000140396|ENST00000452400|NCOA2;NCOA2|p.K354Tfs*13|1|0.23|ENSG00000140396|chr8:70159565-70159568|AGTT/-|frameshift_variant ENSG00000140396|ENST00000452400|NCOA2 ENSG00000140396|ENST00000452400|NCOA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7959594726562 2 559.795663 1117.57677 NaN NaN NaN NaN NaN NaN NaN 27.181 1 27.181 26.681 27.681 0 0 0 0 0.99248 1 13997 13997 1.4819 0.15237 1 54436 5230 36622 37442 63243 63243 0.022688241263722375 RPVMDVAFVQF 11 Unmodified _RPVMDVAFVQF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.8427734375 2 654.842091 1307.66963 0.4789 0.00031361 -0.37994 -0.0002488 0.098964 6.4806E-05 654.8419498515285 79.922 0.21548 79.98 79.879 80.094 0.057587 21 8 3 0 0 0 0.35659 1 44174 44174 23.801 12.161 1 2461700 54437 2113 36623 37443 63244 63244 0.028100055880941 RPVMPSRQI 9 Unmodified _RPVMPSRQI_ 0 0 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8736267089844 3 361.874571 1082.60188 1.2948 0.00046856 -1.7338 -0.00062743 -0.43902 -0.00015887 361.8737838742479 28.387 0.18102 25.238 25.142 25.323 -3.1482 15 9 2 0 0 0 0.331 1 15819 15819 15.739 2.866 1 10504000 54438 9333 36624 37444 63245 63245 0.06388600447962745 RPVNSAAL 8 Unmodified _RPVNSAAL_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32689659-32696621:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2408447265625 2 414.240327 826.466101 0.4833 0.0002002 0.31289 0.00012961 0.79619 0.00032981 414.24049337360333 24.556 0.3097 21.673 21.525 21.835 -2.8831 26 16 2 0 0 0 0.52622 1 13443 13443 32.305 3.2239 1 2485700 54439 1389 36625 37445 63246 63246 0.045926489288035555 RPVNVVNVY 9 Unmodified _RPVNVVNVY_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.301513671875 2 530.300916 1058.58728 0.2904 0.000154 -0.12063 -6.397E-05 0.16977 9.0029E-05 530.3006094806873 40.085 0.26295 40.085 39.952 40.214 0 24 12 2 0 0 0 0.16226 1 21507 21507 26.884 4.1474 1 11241000 54440 1628 36626 37446 63247 63247 0.06032851571490028 RPVNVVNVY 9 Unmodified _RPVNVVNVY_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3016967773438 2 530.300916 1058.58728 0.44632 0.00023669 0.73768 0.00039119 1.184 0.00062788 530.3012367614738 40.395 0.35761 40.098 39.923 40.281 -0.29716 58 16 5 0 0 0 0.025842 2 21302 21302;21406 54.774 26.287 1 54400000 54441 1628 36626 37446 63248;63249 63248 0.06032851571490028 RPVNVVNVY 9 Unmodified _RPVNVVNVY_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.301025390625 2 530.300916 1058.58728 0.37735 0.00020011 0.21342 0.00011317 0.59076 0.00031328 530.3010267776688 40.076 0.29579 40.081 39.894 40.19 0.0050545 31 13 3 0 0 0 0.017075 2 21311 21311;21408 54.774 34.32 1 7027400 54442 1628 36626 37446 63250;63251 63250 0.06032851571490028 RPVNVVNVY 9 Unmodified _RPVNVVNVY_ 0 0 0 nc|ENSG00000093009|O75419-3|CDC45;ENSG00000093009|ENST00000263201|CDC45 nc|ENSG00000093009|O75419-3|CDC45 nc|ENSG00000093009|O75419-3|CDC45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.30126953125 2 530.300916 1058.58728 0.47615 0.0002525 0.19873 0.00010539 0.67488 0.00035789 530.3009185127465 45.446 0.56603 40.491 40.223 40.789 -4.9549 131 38 4 0 0 0 0.025842 3 28016 27738;27875;28016 46.021 25.567 1 314840000 54443 1628 36626 37446 63252;63253;63254 63254 0.06032851571490028 RPVPEYQKY 9 Unmodified _RPVPEYQKY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.3118286132812 2 590.31148 1178.60841 -0.32414 -0.00019134 0.82158 0.00048499 0.49745 0.00029365 590.311725178261 22.632 0.20569 22.632 22.528 22.734 0 22 9 3 0 0 0 0.29507 1 11506 11506 17.443 10.719 1 1424600 54444 510 36627 37447 63255 63255 0.026248168803249428 RPVPEYQKY 9 Unmodified _RPVPEYQKY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8764953613281 3 393.876746 1178.60841 -0.37696 -0.00014848 0.97158 0.00038268 0.59463 0.00023421 393.87676789121105 22.652 0.20569 22.652 22.528 22.734 0 13 9 2 0 0 0 0.52067 1 11536 11536 3.8763 3.0998 1 510660 54445 510 36627 37447 63256 63256 0.026248168803249428 RPVPEYQKY 9 Unmodified _RPVPEYQKY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.1997680664062 3 393.876746 1178.60841 0.19312 7.6067E-05 -1.9617 -0.00077266 -1.7685 -0.00069659 393.8755491266868 25.226 0.28696 22.343 22.3 22.586 -2.8831 20 16 2 0 0 0 0.20728 1 13867 13867 9.544 4.2471 1 6744300 54446 510 36627 37447 63257 63257 0.026248168803249428 RPVPEYQKY 9 Unmodified _RPVPEYQKY_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 393.876746 1178.60841 0.23959 9.4371E-05 -0.10914 -4.2989E-05 0.13045 5.1382E-05 394.21071715783347 25.165 0.050133 22.282 22.249 22.3 -2.8831 -0.18538 -0.00094 NaN 3.8763 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 4874500 54447 510 36627 37447 0.026248168803249428 RPVPFASEM 9 Oxidation (M) _RPVPFASEM(Oxidation (M))_ RPVPFASEM(1) RPVPFASEM(89) 0 0 1 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2608032226562 2 525.257859 1048.50117 -0.42215 -0.00022174 1.2004 0.00063054 0.7783 0.00040881 525.2584704012322 32.145 0.5381 32.145 31.778 32.316 0 93 26 6 0 0 0 0.0086722 3 16633 16633;16733;16837 107.19 78.7 1 33382000 54448 5145 36628 37448 63258;63259;63260 63258 943 -0.02114476325573378 RPVPFASEM 9 Oxidation (M) _RPVPFASEM(Oxidation (M))_ RPVPFASEM(1) RPVPFASEM(120) 0 0 1 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2470092773438 2 525.257859 1048.50117 -0.112 -5.8827E-05 1.0199 0.00053572 0.90793 0.0004769 525.2586136880905 32.044 0.52817 31.915 31.647 32.176 -0.12915 79 20 5 0 0 0 0.0044708 4 16576 16576;16581;16685;16781 118.89 82.851 1 21106000 54449 5145 36628 37448 63261;63262;63263;63264 63261 943 -0.02114476325573378 RPVPFASEM 9 Oxidation (M) _RPVPFASEM(Oxidation (M))_ RPVPFASEM(1) RPVPFASEM(110) 0 0 1 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2581787109375 2 525.257859 1048.50117 0.55206 0.00028997 -0.20761 -0.00010905 0.34445 0.00018092 525.2576177547977 36.392 0.69238 32.199 31.87 32.562 -4.1928 81 42 2 0 0 0 0.0086904 3 21198 21069;21198;21320 107.19 71.143 1 108130000 54450 5145 36628 37448 63265;63266;63267 63266 943 -0.02114476325573378 RPVPFASEM 9 Unmodified _RPVPFASEM_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2611694335938 2 517.260402 1032.50625 NaN NaN NaN NaN NaN NaN NaN 45.694 1 45.694 45.194 46.194 0 0 0 0 0.16996 1 24923 24923 34.402 12.655 1 54451 5145 36628 37449 63268 63268 -0.008701724629418095 RPVPFASEM 9 Unmodified _RPVPFASEM_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2608032226562 2 517.260402 1032.50625 0.11341 5.8665E-05 0.032736 1.6933E-05 0.14615 7.5598E-05 517.260530388109 45.979 0.28376 45.655 45.51 45.793 -0.32425 34 14 3 0 0 0 0.032796 1 24570 24570 53.833 32.086 1 13143000 54452 5145 36628 37449 63269 63269 -0.008701724629418095 RPVPFASEM 9 Unmodified _RPVPFASEM_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MSMS AL20221201_MKP_PDAC_01 4 517.2608032226562 2 517.260402 1032.50625 NaN NaN NaN NaN NaN NaN NaN 51.283 1 45.634 45.134 46.134 -5.649 0 0 0 0.044471 1 32261 32261 60.074 31.587 1 54453 5145 36628 37449 63270 63270 -0.008701724629418095 RPVPFASEM 9 Unmodified _RPVPFASEM_ 0 0 0 ENSG00000139318|ENST00000279488|DUSP6;nc|ENSG00000139318|Q16828-2|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 ENSG00000139318|ENST00000279488|DUSP6 MSMS AL20221201_MKP_PDAC_01 4 517.2607421875 2 517.260402 1032.50625 NaN NaN NaN NaN NaN NaN NaN 51.462 1 45.813 45.313 46.313 -5.649 0 0 0 0.083082 1 32384 32384 47.749 19.262 1 54454 5145 36628 37449 63271 63271 -0.008701724629418095 RPVPKGATY 9 Unmodified _RPVPKGATY_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7831115722656 2 494.782359 987.550165 -0.50731 -0.00025101 0.012602 6.2353E-06 -0.4947 -0.00024477 494.7824072700219 16.455 0.18323 16.455 16.358 16.542 0 83 47 2 0 0 0 0.59218 1 7971 7971 1.8442 1.0506 1 1125600 54455 8452 36629 37450 63272 63272 0.0558918002569726 RPVPKGATY 9 Unmodified _RPVPKGATY_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7829895019531 2 494.782359 987.550165 NaN NaN NaN NaN NaN NaN NaN 16.536 1 16.536 16.036 17.036 0 0 0 0 0.7818 1 8072 8072 6.7232 3.8339 1 54456 8452 36629 37450 63273 63273 0.0558918002569726 RPVPKGATY 9 Unmodified _RPVPKGATY_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7823486328125 2 494.782359 987.550165 -0.41367 -0.00020468 0.79791 0.00039479 0.38424 0.00019012 494.78274722384754 16.974 0.17062 16.975 16.872 17.043 0.0010529 117 49 3 0 0 0 0.21643 1 8380 8380 21.537 16.306 1 2414900 54457 8452 36629 37450 63274 63274 0.0558918002569726 RPVPKGATY 9 Unmodified _RPVPKGATY_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7822875976562 2 494.782359 987.550165 0.24183 0.00011966 0.35036 0.00017335 0.5922 0.00029301 494.78252117192386 16.645 0.16996 16.65 16.537 16.707 0.0050564 17 9 2 0 0 0 0.06294 1 8341 8341 41.84 32.457 1 1671000 54458 8452 36629 37450 63275 63275 0.0558918002569726 RPVPKGATY 9 Unmodified _RPVPKGATY_ 0 0 0 RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant;nc|ENSG00000174748|P61313-2|RPL15;ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant RPL15|p.R114Efs*10|1|0.27|ENSG00000174748|chr3:23919223-23919224|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7826843261719 2 494.782359 987.550165 0.46061 0.0002279 -0.34085 -0.00016865 0.11976 5.9254E-05 494.78215414243 17.435 0.25677 14.848 14.708 14.965 -2.5866 112 50 3 0 0 0 0.012228 2 9150 9047;9150 74.2 51.051 1 18570000 54459 8452 36629 37450 63276;63277 63277 0.0558918002569726 RPVPLAVKY 9 Unmodified _RPVPLAVKY_ 0 0 0 ENST00000478171.1_1_3:48450818-48451478:-|nuORF;ENST00000485535.5_1_3:48445895-48454598:-|nuORF;nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1 ENST00000478171.1_1_3:48450818-48451478:-|nuORF ENST00000478171.1_1_3:48450818-48451478:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.822265625 2 521.824027 1041.6335 -0.33915 -0.00017698 0.68386 0.00035685 0.3447 0.00017988 521.8245414405862 36.695 0.27766 36.716 36.559 36.836 0.021545 28 12 3 0 0 0 0.12424 1 19405 19405 30.637 14.789 1 4668900 54460 7122 36630 37451 63278 63278 0.11434916473558587 RPVPLEQTY 9 Unmodified _RPVPLEQTY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7981567382812 2 551.798206 1101.58186 -0.1857 -0.00010247 -0.16117 -8.8931E-05 -0.34687 -0.0001914 551.798077912286 35.031 0.38114 35.031 34.846 35.227 0 59 19 4 0 0 0 0.0082353 2 18441 18441;18554 96.111 48.362 1 44807000 54461 5575 36631 37452 63279;63280 63279 0.03513127989003806 RPVPLEQTY 9 Unmodified _RPVPLEQTY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7984008789062 2 551.798206 1101.58186 -0.26352 -0.00014541 0.46691 0.00025764 0.20339 0.00011223 551.7984470412309 35.178 0.23706 34.955 34.83 35.067 -0.2224 16 10 2 0 0 0 0.10247 1 18415 18415 32.786 6.5175 1 2090900 54462 5575 36631 37452 63281 63281 0.03513127989003806 RPVPLEQTY 9 Unmodified _RPVPLEQTY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7980346679688 2 551.798206 1101.58186 0.43914 0.00024232 -0.34214 -0.00018879 0.096998 5.3523E-05 551.798041197289 39.749 0.65384 35.298 34.84 35.494 -4.4509 83 40 3 0 0 0 0.044011 1 23575 23575 47.749 17.524 1 81554000 54463 5575 36631 37452 63282 63282 0.03513127989003806 RPVPLEQTY 9 Unmodified _RPVPLEQTY_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.798206 1101.58186 0.06698 3.696E-05 0.52624 0.00029038 0.59322 0.00032734 552.3007087728406 34.906 0.11774 34.933 34.878 34.996 0.027401 -0.12116 0.00071474 NaN 96.111 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 549910 54464 5575 36631 37452 0.03513127989003806 RPVPPEVAQQY 11 Unmodified _RPVPPEVAQQY_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.3405151367188 2 642.340769 1282.66699 -0.66933 -0.00042994 0.49278 0.00031653 -0.17655 -0.0001134 642.3411190728481 34.669 0.82491 34.669 34.384 35.209 0 101 42 3 0 0 0 0.0079293 3 18318 18203;18318;18434 59.052 34.061 1 4891800 54465 4369 36632 37453 63283;63284;63285 63284 0.03695873454807952 RPVPPEVAQQY 11 Unmodified _RPVPPEVAQQY_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3414306640625 2 642.340769 1282.66699 -0.52421 -0.00033672 1.0614 0.00068175 0.53714 0.00034503 642.3415650603541 35.066 0.46791 34.844 34.533 35.001 -0.2224 35 20 2 0 0 0 0.55668 1 18380 18380 16.566 10.36 1 1341900 54466 4369 36632 37453 63286 63286 0.03695873454807952 RPVPPEVAQQY 11 Unmodified _RPVPPEVAQQY_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.341796875 2 642.340769 1282.66699 0.34618 0.00022236 1.2731 0.00081774 1.6192 0.0010401 642.3415766660592 39.672 0.53068 35.221 34.964 35.494 -4.4509 64 33 3 0 0 0 1.764E-06 1 23669 23669 121.5 85.376 1 21809000 54467 4369 36632 37453 63287 63287 0.03695873454807952 RPVPPEVAQQY 11 Unmodified _RPVPPEVAQQY_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MSMS AL20221201_MKP_PDAC_01 4 642.3446655273438 2 642.340769 1282.66699 NaN NaN NaN NaN NaN NaN NaN 39.417 1 34.966 34.466 35.466 -4.4509 0 0 0 0.10035 1 23390 23390 53.317 37.168 1 54468 4369 36632 37453 63288 63288 0.03695873454807952 RPVPPPPSL 9 Unmodified _RPVPPPPSL_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-SECPEP AL20221201_MKP_PDAC_01 4 480.0181274414062 2 480.287277 958.560001 0.72962 0.00035042 -0.61627 -0.00029599 0.11335 5.4439E-05 480.28726351286673 43.784 0.17379 39.019 38.919 39.092 -4.7648 14 10 2 0 0 0 0.061392 1 26603 26603 51.63 15.503 1 3528600 54469 1183 36633 37454 63289 63289 0.07906368031081001 RPVPVPRSL 9 Unmodified _RPVPVPRSL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8189697265625 2 510.819276 1019.624 0.16788 8.5755E-05 -0.41986 -0.00021447 -0.25198 -0.00012872 510.8191765697653 32.504 0.30658 32.534 32.366 32.672 0.029743 21 11 3 0 0 0 0.34134 1 17113 17113 15.248 3.0078 1 2427000 54470 1980 36634 37455 63290 63290 0.11497148188038864 RPVRLGQL 8 Unmodified _RPVRLGQL_ 0 0 0 ENST00000529654.5_1_8:145616841-145618286:+|nuORF;ENSG00000173137|ENST00000308860|ADCK5 ENST00000529654.5_1_8:145616841-145618286:+|nuORF ENST00000529654.5_1_8:145616841-145618286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.7973937988281 2 469.798343 937.582134 -0.04172 -1.96E-05 -0.6672 -0.00031345 -0.70892 -0.00033305 469.7979998593364 33.479 0.21403 33.508 33.411 33.625 0.028934 16 9 2 0 0 0 0.6895 1 17611 17611 18.135 1.1927 1 3993900 54471 8289 36635 37456 63291 63291 0.11084592499514656 RPVRLGQL 8 Unmodified _RPVRLGQL_ 0 0 0 ENST00000529654.5_1_8:145616841-145618286:+|nuORF;ENSG00000173137|ENST00000308860|ADCK5 ENST00000529654.5_1_8:145616841-145618286:+|nuORF ENST00000529654.5_1_8:145616841-145618286:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7987365722656 2 469.798343 937.582134 1.1562 0.00054316 -0.26389 -0.00012398 0.89227 0.00041919 469.7983080593697 37.483 0.3643 33.199 32.991 33.355 -4.2835 37 21 2 0 0 0 0.6895 1 21923 21923 18.135 1.1927 1 16887000 54472 8289 36635 37456 63292 63292 0.11084592499514656 RPVSGDLSY 9 Unmodified _RPVSGDLSY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.25390625 2 497.253631 992.49271 -0.49999 -0.00024862 0.43705 0.00021732 -0.062944 -3.1299E-05 497.2538185465963 30.079 0.31289 30.079 29.909 30.222 0 36 14 4 0 0 0 0.025842 1 15579 15579 57.722 15.627 1 12525000 54473 8389 36636 37457 63293 63293 -0.0038370697051277602 RPVSGDLSY 9 Unmodified _RPVSGDLSY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2548828125 2 497.253631 992.49271 1.1833 0.00058839 -0.10784 -5.3624E-05 1.0754 0.00053477 497.2534029331074 34.151 0.55548 30.166 29.824 30.379 -3.9853 60 30 4 0 0 0 0.025842 2 19656 19656;19779 57.722 9.3761 1 52848000 54474 8389 36636 37457 63294;63295 63294 -0.0038370697051277602 RPVSIEGSEEY 11 Unmodified _RPVSIEGSEEY_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;ENST00000564306.5_1_15:65892084-65903486:-|nuORF;ENST00000431261.6_1_15:65897563-65899763:-|nuORF;nc|ENSG00000138614|Q96SY0-2|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3032836914062 2 633.304049 1264.59355 -0.06872 -4.3521E-05 -0.43153 -0.00027329 -0.50025 -0.00031681 633.303869182377 31.623 0.27526 31.623 31.503 31.778 0 32 13 3 0 0 0 0.10787 1 16457 16457 42.835 13.754 1 3700000 54475 5068 36637 37458 63296 63296 -0.028167197783204756 RPVSIEGSEEY 11 Unmodified _RPVSIEGSEEY_ 0 0 0 ENSG00000138614|ENST00000313182|INTS14;ENST00000564306.5_1_15:65892084-65903486:-|nuORF;ENST00000431261.6_1_15:65897563-65899763:-|nuORF;nc|ENSG00000138614|Q96SY0-2|INTS14 ENSG00000138614|ENST00000313182|INTS14 ENSG00000138614|ENST00000313182|INTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3042602539062 2 633.304049 1264.59355 0.669 0.00042368 0.23094 0.00014626 0.89995 0.00056994 633.304274010309 36.212 0.33248 32.019 31.82 32.152 -4.1928 35 19 3 0 0 0 0.034488 1 21057 21057 57.108 29.479 1 10827000 54476 5068 36637 37458 63297 63297 -0.028167197783204756 RPVSREAQL 9 Unmodified _RPVSREAQL_ 0 0 0 REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3031005859375 2 528.301447 1054.58834 0.19493 0.00010298 0.59753 0.00031567 0.79245 0.00041865 528.3017488012061 22.974 0.28462 20.196 20.002 20.287 -2.7784 29 17 2 0 0 0 0.20428 1 12370 12370 22.736 0 1 5726300 + 54477 26803 36638 37459 63298 63298 0.06323065940387096 RPVSSAASVY 10 Unmodified _RPVSSAASVY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7744140625 2 518.774731 1035.53491 -0.16722 -8.6751E-05 -0.38186 -0.0001981 -0.54909 -0.00028485 518.7744903788187 25.157 0.32543 25.157 25 25.326 0 74 19 5 0 0 0 0.1899 2 12828 12828;12928 34.932 5.8505 1 94593000 54478 2759 36639 37460 63299;63300 63299 0.018562684378593985 RPVSSAASVY 10 Unmodified _RPVSSAASVY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7750854492188 2 518.774731 1035.53491 0.15133 7.8505E-05 0.11328 5.8767E-05 0.26461 0.00013727 518.7747727975263 25.33 0.22295 25.313 25.165 25.388 -0.017006 24 10 3 0 0 0 0.060508 1 12938 12938 55.503 19.376 1 39375000 54479 2759 36639 37460 63301 63301 0.018562684378593985 RPVSSAASVY 10 Unmodified _RPVSSAASVY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.77294921875 2 518.774731 1035.53491 0.23736 0.00012313 -1.7637 -0.00091496 -1.5263 -0.00079183 518.7738046802809 25.06 0.13265 25.084 24.974 25.106 0.024429 8 5 2 0 0 0 0.060508 1 12928 12928 55.503 19.376 1 9704900 54480 2759 36639 37460 63302 63302 0.018562684378593985 RPVSSAASVY 10 Unmodified _RPVSSAASVY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.775146484375 2 518.774731 1035.53491 0.76844 0.00039865 -0.0146 -7.5743E-06 0.75384 0.00039107 518.7747171167555 28.513 0.45488 25.365 25.119 25.573 -3.1482 91 23 5 0 0 0 0.095786 2 15809 15809;15932 47.594 18.513 1 355980000 54481 2759 36639 37460 63303;63304 63303 0.018562684378593985 RPVSVWDVL 9 Unmodified _RPVSVWDVL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.26318359375 2 535.803291 1069.59203 0.12957 6.9425E-05 -0.49889 -0.00026731 -0.36932 -0.00019788 535.8030072959617 77.386 0.23723 77.436 77.321 77.558 0.05011 16 9 2 0 0 0 0.15363 1 42727 42727 29.841 10.584 1 1665300 54482 10835 36640 37461 63305 63305 0.06001735714221468 RPVTLTHVEY 10 Unmodified _RPVTLTHVEY_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.8301391601562 2 607.830037 1213.64552 NaN NaN NaN NaN NaN NaN NaN 33.944 1 33.753 33.253 34.253 -0.19131 0 0 0 0.77204 1 17715 17715 10.8 8.9553 1 54483 7578 36641 37462 63306 63306 0.04724488426109019 RPVTLTHVEY 10 Unmodified _RPVTLTHVEY_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5551147460938 3 405.555784 1213.64552 1.2003 0.0004868 -2.3277 -0.000944 -1.1273 -0.0004572 405.5558083880268 37.938 0.21587 33.569 33.456 33.671 -4.3689 29 12 3 0 0 0 0.1379 1 22357 22357 41.347 27.129 1 8144500 54484 7578 36641 37462 63307 63307 0.04724488426109019 RPVTLTHVEY 10 Unmodified _RPVTLTHVEY_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MSMS AL20221201_MKP_PDAC_01 4 607.830810546875 2 607.830037 1213.64552 NaN NaN NaN NaN NaN NaN NaN 37.967 1 33.598 33.098 34.098 -4.3689 0 0 0 0.62876 1 22343 22343 22.658 13.275 1 54485 7578 36641 37462 63308 63308 0.04724488426109019 RPVTQTDVY 9 Unmodified _RPVTQTDVY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7802124023438 2 539.780013 1077.54547 -0.28344 -0.00015299 0.11668 6.2981E-05 -0.16676 -9.0012E-05 539.7800356659806 25.469 0.24552 25.469 25.346 25.591 0 18 11 2 0 0 0 0.11784 1 13054 13054 31.268 9.5217 1 1550100 54486 4591 36642 37463 63309 63309 0.009802510922781948 RPVTVFLQL 9 Unmodified _RPVTVFLQL_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000336486.5_1_10:104157832-104159780:+|nuORF;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8289794921875 2 536.829309 1071.64407 0.21812 0.00011709 -1.4377 -0.00077179 -1.2196 -0.0006547 536.8282401709877 75.478 0.37944 75.524 75.346 75.725 0.045959 31 17 2 0 0 0 0.19349 1 41645 41645 24.991 3.2443 1 2328600 54487 1206 36643 37464 63310 63310 0.11110899127993434 RPVVMVGG 8 Unmodified _RPVVMVGG_ 0 0 0 ENSG00000174326|ENST00000574600|SLC16A11;nc|ENSG00000174326|Q8NCK7|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 ENSG00000174326|ENST00000574600|SLC16A11 MSMS AL20221201_MKP_PDAC_01 4 407.7349853515625 2 407.733823 813.453093 NaN NaN NaN NaN NaN NaN NaN 14.183 1 11.68 11.18 12.18 -2.5029 0 0 0 0.97444 1 7188 7188 0 0 1 54488 8411 36644 37465 63311 63311 0.03890494545078127 RPWAIAEEE 9 Unmodified _RPWAIAEEE_ 0 0 0 REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5174560546875 3 367.517218 1099.52982 -0.063478 -2.3329E-05 1.3065 0.00048015 1.243 0.00045682 367.51731504834953 37.705 0.2405 37.434 37.303 37.544 -0.27133 25 10 3 0 0 0 0.2143 1 19804 19804 20.415 8.1739 1 5868200 + 54489 27825 36645 37466 63312 63312 -0.015960354247681607 RPWAIAEEE 9 Unmodified _RPWAIAEEE_ 0 0 0 REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 367.517218 1099.52982 0.027794 1.0215E-05 -0.13193 -4.8485E-05 -0.10413 -3.827E-05 367.51716771058017 37.457 0.25246 37.457 37.316 37.569 0 0.011855 -0.00024435 NaN 20.415 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 11810000 + 54490 27825 36645 37466 -0.015960354247681607 RPWAIAEEE 9 Unmodified _RPWAIAEEE_ 0 0 0 REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF REV__ENST00000487389.5_1_3:146251328-146262373:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 367.517218 1099.52982 -0.063478 -2.3329E-05 1.3065 0.00048015 1.243 0.00045682 367.51731504834953 37.705 0.2405 37.434 37.303 37.544 -0.27133 -0.011855 0.0013415 NaN 20.415 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5868200 + 54491 27825 36645 37466 -0.015960354247681607 RPWEHYRFTYL 11 Unmodified _RPWEHYRFTYL_ 0 0 0 REV__ENSG00000165905|ENST00000401752|LARGE2 REV__ENSG00000165905|ENST00000401752|LARGE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.7227783203125 3 523.265004 1566.77318 1.0041 0.00052541 1.1335 0.00059314 2.1376 0.0011186 523.2652832598874 34.295 0.31438 30.31 30.115 30.429 -3.9853 26 17 3 0 0 0 0.30592 1 19682 19682 0.32927 0.23443 1 13357000 + 54492 22061 36646 37467 63313 63313 0.012466290201018637 RPWEKNSTTL 10 Unmodified _RPWEKNSTTL_ 0 0 0 ENSG00000125753|ENST00000245932|VASP;ENST00000588273.1_1_19:46027302-46029432:+|nuORF;ENST00000588463.1_1_19:46027302-46027401:+|nuORF ENSG00000125753|ENST00000245932|VASP ENSG00000125753|ENST00000245932|VASP MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2211608886719 3 411.219172 1230.63569 0.6509 0.00026766 0.46048 0.00018936 1.1114 0.00045702 411.21949663821465 28.057 0.25161 24.909 24.807 25.059 -3.1482 33 13 3 0 0 0 0.42967 1 15614 15614 19.987 14.584 1 8634200 54493 3878 36647 37468 63314 63314 0.029593004207072227 RPWIRELIL 9 Unmodified _RPWIRELIL_ 0 0 0 ENST00000602622.5_1_16:67693970-67694150:-|nuORF;ENST00000602423.1_1_16:67693617-67694150:-|nuORF;ENST00000602860.5_1_16:67693438-67694150:-|nuORF;ENST00000602519.1_1_16:67693367-67694129:-|nuORF;nc|ENSG00000102977|Q96AP0-2|ACD;ENSG00000102977|ENST00000620761|ACD ENST00000602622.5_1_16:67693970-67694150:-|nuORF ENST00000602622.5_1_16:67693970-67694150:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2489929199219 3 399.248514 1194.72371 NaN NaN NaN NaN NaN NaN NaN 66.74 1 66.749 66.249 67.249 0.0095596 0 0 0 0.38798 1 36619 36619 20.581 7.0623 1 54494 2088 36648 37469 63315 63315 0.13413965802010352 RPWKASSSSL 10 Unmodified _RPWKASSSSL_ 0 0 0 ENST00000248958.4_1_22:21998288-21998567:+|nuORF ENST00000248958.4_1_22:21998288-21998567:+|nuORF ENST00000248958.4_1_22:21998288-21998567:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.801513671875 2 559.80128 1117.58801 0.071437 3.9991E-05 0.5481 0.00030683 0.61954 0.00034682 559.8015233199682 25.468 0.27435 22.585 22.387 22.662 -2.8831 18 14 2 0 0 0 0.043225 1 13958 13958 61.602 27.2 1 2306700 54495 11131 36649 37470 63316 63316 0.03391646220529765 RPWKKILI 8 Unmodified _RPWKKILI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.9031677246094 3 351.902567 1052.68587 0.1602 5.6373E-05 0.32025 0.0001127 0.48044 0.00016907 351.90274395417197 61.584 0.35603 61.551 61.355 61.711 -0.032787 40 17 3 0 0 0 0.78031 1 33605 33605 10.074 10.074 1 4823500 54496 1848 36650 37471 63317 63317 0.1616349960718253 RPWKKILI 8 Unmodified _RPWKKILI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.9026184082031 3 351.902567 1052.68587 1.4526 0.00051117 0.25128 8.8426E-05 1.7039 0.00059959 351.90269951753095 93.659 0.5051 87.483 87.318 87.823 -6.1757 69 29 3 0 0 0 0.78031 3 61925 61925;62053;62230 10.074 10.074 1 27305000 54497 1848 36650 37471 63318;63319;63320 63318 0.1616349960718253 RPWKKILI 8 Unmodified _RPWKKILI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3502197265625 2 527.350212 1052.68587 0.78297 0.0004129 0.31426 0.00016572 1.0972 0.00057862 527.3502142500972 93.635 0.5207 87.46 87.303 87.823 -6.1757 67 30 3 0 0 0 0.71527 1 61944 61944 14.582 0 1 38848000 54498 1848 36650 37471 63321 63321 0.1616349960718253 RPWLAECTPI 10 Unmodified _RPWLAECTPI_ 0 0 0 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1 nc|ENSG00000070961|P20020-5|ATP2B1 nc|ENSG00000070961|P20020-5|ATP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8759460449219 3 395.874348 1184.60121 -0.1381 -5.467E-05 3.4415 0.0013624 3.3034 0.0013077 395.87561316018736 29.702 0.17274 29.733 29.611 29.784 0.030104 11 7 2 0 0 0 0.66569 1 15520 15520 3.5871 0 1 1668900 54499 1047 36651 37472 63322 63322 0.016297610082574465 RPWLEGRHTL 10 Unmodified _RPWLEGRHTL_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.235595703125 3 422.235156 1263.68364 -0.13699 -5.7843E-05 0.53557 0.00022614 0.39858 0.00016829 422.2353968994403 30.67 0.58151 30.7 30.477 31.059 0.030104 72 25 5 0 0 0 0.047566 2 16086 15975;16086 59.496 40.428 1 28193000 54500 3096 36652 37473 63323;63324 63324 0.06234419131442337 RPWLEGRHTL 10 Unmodified _RPWLEGRHTL_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000475582.5_1_2:27589580-27589796:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5706787109375 3 422.235156 1263.68364 1.0694 0.00045154 -0.27419 -0.00011577 0.79522 0.00033577 422.2349098358957 34.415 0.4292 30.32 30.089 30.518 -4.0951 36 24 2 0 0 0 0.021731 1 19816 19816 74.094 63.195 1 27773000 54501 3096 36652 37473 63325 63325 0.06234419131442337 RPWLRPAAL 9 Unmodified _RPWLRPAAL_ 0 0 0 ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8289184570312 2 540.327268 1078.63998 -0.11121 -6.0089E-05 1.1729 0.00063377 1.0617 0.00057368 540.3278295944402 44.801 0.12133 44.779 44.698 44.82 -0.022064 9 5 2 0 0 0 0.11784 1 24043 24043 26.884 8.7487 1 5465300 54502 6834 36653 37474 63326 63326 0.10380854424920472 RPWLRPAAL 9 Unmodified _RPWLRPAAL_ 0 0 0 ENSG00000162073|ENST00000318782|PAQR4;nc|ENSG00000162073|Q8N4S7-3|PAQR4;nc|ENSG00000162073|Q8N4S7-2|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 ENSG00000162073|ENST00000318782|PAQR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5530700683594 3 360.553937 1078.63998 -0.18881 -6.8075E-05 -0.57647 -0.00020785 -0.76527 -0.00027592 360.55376316692417 44.813 0.27161 44.791 44.623 44.895 -0.022064 17 12 2 0 0 0 0.044296 1 24045 24045 47.594 26.004 1 13545000 54503 6834 36653 37474 63327 63327 0.10380854424920472 RPWMLPCTQSK 11 Unmodified _RPWMLPCTQSK_ 0 0 0 REV__ENST00000492703.1_1_20:35401984-35402095:-|nuORF REV__ENST00000492703.1_1_20:35401984-35402095:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.5628356933594 3 449.561775 1345.6635 0.82703 0.0003718 0.68648 0.00030862 1.5135 0.00068042 449.89642224378525 22.334 0.20521 19.599 19.452 19.657 -2.7348 19 10 2 0 0 0 0.69316 1 11976 11976 2.2527 0 1 3514100 + 54504 27908 36654 37475 63328 63328 0.0044916408492099436 RPWSGPSSV 9 Unmodified _RPWSGPSSV_ 0 0 0 ENST00000479540.5_1_20:62204085-62204322:-|nuORF ENST00000479540.5_1_20:62204085-62204322:-|nuORF ENST00000479540.5_1_20:62204085-62204322:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7480773925781 2 486.748516 971.482479 0.73597 0.00035823 -0.46709 -0.00022735 0.26888 0.00013088 486.74850659079385 36.236 0.33112 32.043 31.837 32.168 -4.1928 30 19 2 0 0 0 0.05483 2 21193 21062;21193 43.772 19.752 1 7938900 54505 14039 36655 37476 63329;63330 63330 -0.004402699050842784 RPWSNSRGL 9 Unmodified _RPWSNSRGL_ 0 0 0 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.78564453125 2 536.785964 1071.55738 0.17901 9.609E-05 -1.5892 -0.00085305 -1.4102 -0.00075696 536.7848973064682 23.308 0.19072 23.325 23.202 23.393 0.01749 17 8 3 0 0 0 0.20507 1 11986 11986 22.658 12.584 1 7271500 54506 9982 36656 37477 63331 63331 0.02445912626126301 RPWSNSRGL 9 Unmodified _RPWSNSRGL_ 0 0 0 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.1919860839844 3 358.193068 1071.55738 0.08238 2.9508E-05 -2.0148 -0.0007217 -1.9325 -0.00069219 358.19239869209923 23.298 0.16455 23.315 23.265 23.43 0.01749 11 7 2 0 0 0 0.047788 1 12028 12028 35.612 14.022 1 3464500 54507 9982 36656 37477 63332 63332 0.02445912626126301 RPWSNSRGL 9 Unmodified _RPWSNSRGL_ 0 0 0 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1929931640625 3 358.193068 1071.55738 0.67667 0.00024238 -0.31309 -0.00011215 0.36358 0.00013023 358.1930296626338 25.88 0.44257 22.929 22.772 23.214 -2.9511 62 28 3 0 0 0 0.047788 2 14165 14165;14279 35.612 8.389 1 20609000 54508 9982 36656 37477 63333;63334 63333 0.02445912626126301 RPWSNSRGL 9 Unmodified _RPWSNSRGL_ 0 0 0 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 ENSG00000197622|ENST00000357235|CDC42SE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7861938476562 2 536.785964 1071.55738 -0.11044 -5.9285E-05 -0.38264 -0.00020539 -0.49308 -0.00026468 536.7857993687416 25.94 0.34166 22.989 22.788 23.13 -2.9511 39 22 2 0 0 0 0.20507 1 14278 14278 22.658 4.5117 1 21249000 54509 9982 36656 37477 63335 63335 0.02445912626126301 RPWTFCLRFQE 11 Unmodified _RPWTFCLRFQE_ 0 0 0 ENST00000377818.3_1_13:73293208-73301685:-|nuORF ENST00000377818.3_1_13:73293208-73301685:-|nuORF ENST00000377818.3_1_13:73293208-73301685:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 742.3718872070312 2 741.869171 1481.72379 0.66312 0.00049195 1.7911 0.0013288 2.4543 0.0018207 741.8709072043638 68.298 0.44215 62.122 61.94 62.383 -6.1757 40 26 2 0 0 0 0.61059 1 44558 44558 10.8 5.0677 1 16660000 54510 12532 36657 37478 63336 63336 0.0021959773964681517 RPWTVMESL 9 Oxidation (M) _RPWTVM(Oxidation (M))ESL_ RPWTVM(1)ESL RPWTVM(50)ESL 0 0 1 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 ENSG00000135720|ENST00000258198|DYNC1LI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7857055664062 2 567.784241 1133.55393 0.67888 0.00038546 -0.44593 -0.00025319 0.23295 0.00013227 567.7842211333905 48.169 0.25246 47.816 47.652 47.905 -0.3526 27 12 3 0 0 0 0.040683 1 25816 25816 49.554 27.808 1 5121100 54511 4734 36658 37479 63337 63337 859 -0.007505182627483009 RPWVTEEAY 9 Unmodified _RPWVTEEAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7819213867188 2 575.780013 1149.54547 -0.15535 -8.9448E-05 -1.3375 -0.00077009 -1.4928 -0.00085954 575.7793246642738 41.549 0.26327 41.549 41.404 41.668 0 41 13 4 0 0 0 0.013041 1 22375 22375 71.922 17.149 1 37091000 54512 16209 36659 37480 63338 63338 -0.023317489077271603 RPWVTEEAY 9 Unmodified _RPWVTEEAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.78076171875 2 575.780013 1149.54547 -0.10484 -6.0364E-05 0.48011 0.00027644 0.37527 0.00021608 575.7797610336529 41.952 0.20582 41.646 41.535 41.741 -0.30682 13 9 2 0 0 0 0.013041 1 22245 22245 71.922 39.617 1 7337700 54513 16209 36659 37480 63339 63339 -0.023317489077271603 RPWVTEEAY 9 Unmodified _RPWVTEEAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7806396484375 2 575.780013 1149.54547 0.57963 0.00033374 0.2772 0.00015961 0.85684 0.00049335 575.7801887724335 46.811 0.39075 41.73 41.586 41.977 -5.0805 138 60 3 0 0 0 0.010611 2 29143 29006;29143 78.728 30.083 1 69480000 54514 16209 36659 37480 63340;63341 63341 -0.023317489077271603 RPWVTEEAY 9 Unmodified _RPWVTEEAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20221201_MKP_PDAC_01 4 575.78076171875 2 575.780013 1149.54547 NaN NaN NaN NaN NaN NaN NaN 46.671 1 41.591 41.091 42.091 -5.0805 0 0 0 0.025332 1 28875 28875 71.922 13.243 1 54515 16209 36659 37480 63342 63342 -0.023317489077271603 RPWYSHPVY 9 Unmodified _RPWYSHPVY_ 0 0 0 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8002319335938 2 602.79854 1203.58253 -0.36731 -0.00022142 1.0101 0.00060891 0.64282 0.00038749 602.7990286655305 36.834 0.25726 36.856 36.706 36.963 0.021545 28 11 3 0 0 0 0.10734 1 19507 19507 32.305 21.482 1 4291400 54516 675 36660 37481 63343 63343 -0.011120325712909107 RPWYSHPVY 9 Unmodified _RPWYSHPVY_ 0 0 0 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 ENSG00000046647|ENST00000680255|GEMIN8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7992553710938 2 602.79854 1203.58253 0.20393 0.00012293 -0.41158 -0.0002481 -0.20765 -0.00012517 602.798282379845 41.179 0.26937 36.571 36.401 36.671 -4.6079 26 16 2 0 0 0 0.08691 1 24631 24631 36.127 8.4982 1 11046000 54517 675 36660 37481 63344 63344 -0.011120325712909107 RPYAAGGKKL 10 Unmodified _RPYAAGGKKL_ 0 0 0 nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;nc|ENSG00000107771|Q9H7U1-2|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 MSMS AL20221201_MKP_PDAC_01 4 354.1870727539062 3 354.213581 1059.61891 NaN NaN NaN NaN NaN NaN NaN 14.786 1 12.259 11.759 12.759 -2.5273 0 0 0 0.80141 1 7533 7533 7.4771 3.6007 1 54518 2516 36661 37482 63345 63345 0.091488443254093 RPYDAEVSL 9 Unmodified _RPYDAEVSL_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2678833007812 2 525.266739 1048.51892 0.051181 2.6884E-05 3.2337 0.0016986 3.2849 0.0017254 525.2686400219725 40.756 0.18945 40.756 40.601 40.79 0 14 10 2 0 0 0 0.05483 1 21949 21949 43.772 9.3707 1 5629000 54519 702 36662 37483 63346 63346 -0.00339437799038933 RPYEDSSQHYY 11 Unmodified _RPYEDSSQHYY_ 0 0 0 ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2102661132812 3 482.209112 1443.60551 -0.16461 -7.9376E-05 0.16637 8.0226E-05 0.0017625 8.4987E-07 482.2091111843987 22.068 0.16653 22.068 21.976 22.143 0 18 11 2 0 0 0 0.71193 1 11198 11198 3.134 2.1204 1 768950 54520 5321 36663 37484 63347 63347 -0.09855103035124557 RPYEKGRLI 9 Unmodified _RPYEKGRLI_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8931274414062 3 377.892619 1130.65603 -0.41561 -0.00015705 0.080178 3.0299E-05 -0.33543 -0.00012676 377.8926408491066 20.075 0.15253 20.103 20.024 20.176 0.028357 10 6 2 0 0 0 0.5209 1 10155 10155 6.1918 4.1058 1 670720 54521 1427 36664 37485 63348 63348 0.09592515871190699 RPYEKGRLI 9 Unmodified _RPYEKGRLI_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8930053710938 3 377.892619 1130.65603 0.095825 3.6212E-05 0.61843 0.0002337 0.71426 0.00026991 377.89285485589676 20.084 0.20094 20.092 19.985 20.186 0.0078487 19 9 3 0 0 0 0.46162 1 10226 10226 9.544 5.3545 1 653690 54522 1427 36664 37485 63349 63349 0.09592515871190699 RPYEKGRLI 9 Unmodified _RPYEKGRLI_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8932495117188 3 377.892619 1130.65603 0.96861 0.00036603 0.077518 2.9293E-05 1.0461 0.00039533 377.8927199835859 22.566 0.34604 19.787 19.574 19.92 -2.7784 52 20 3 0 0 0 0.098164 1 12118 12118 33.445 19.04 1 12006000 54523 1427 36664 37485 63350 63350 0.09592515871190699 RPYEKGRLII 10 Unmodified _RPYEKGRLII_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.9218444824219 3 415.587307 1243.74009 -0.27042 -0.00011238 0.91417 0.00037992 0.64375 0.00026753 415.58767145307286 30.877 0.34758 30.907 30.737 31.084 0.030106 35 14 4 0 0 0 0.45406 2 16115 16115;16212 18.721 9.9178 1 5608600 54524 1427 36665 37486 63351;63352 63351 0.12797046968080394 RPYEKGRLII 10 Unmodified _RPYEKGRLII_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000465677.1_1_9:33034269-33037131:+|nuORF nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.5885620117188 3 415.587307 1243.74009 1.5495 0.00064395 0.53094 0.00022065 2.0804 0.0008646 415.5875623734383 34.041 0.46527 30.055 29.805 30.27 -3.9853 57 25 3 0 0 0 0.12562 2 19648 19516;19648 42.862 19.847 1 12393000 54525 1427 36665 37486 63353;63354 63354 0.12797046968080394 RPYEPINSI 9 Unmodified _RPYEPINSI_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MSMS AL20221201_MKP_PDAC_01 4 544.7916259765625 2 544.790381 1087.56621 NaN NaN NaN NaN NaN NaN NaN 46.862 1 41.781 41.281 42.281 -5.0805 0 0 0 0.0053534 1 29020 29020 103.42 38.184 1 54526 3095 36666 37487 63355 63355 0.025928414719373905 RPYHHWELGRL 11 Unmodified _RPYHHWELGRL_ 0 0 0 ENST00000507419.5_1_5:133984013-133984100:-|nuORF ENST00000507419.5_1_5:133984013-133984100:-|nuORF ENST00000507419.5_1_5:133984013-133984100:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.59521484375 3 488.593343 1462.7582 NaN NaN NaN NaN NaN NaN NaN 97.601 1 91.425 90.925 91.925 -6.1757 0 0 0 0.93984 1 64679 64679 2.6312 0.19645 1 54527 14537 36667 37488 63356 63356 0.0453318194277017 RPYKPVVL 8 Unmodified _RPYKPVVL_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.806396484375 2 486.30547 970.596387 -0.031168 -1.5157E-05 0.032987 1.6042E-05 0.001819 8.846E-07 486.3055940408935 31.514 0.19188 31.545 31.457 31.648 0.030106 14 8 2 0 0 0 0.57045 1 16531 16531 28.487 7.6156 1 1869000 54528 1031 36668 37489 63357 63357 0.10991244927799926 RPYKPVVL 8 Unmodified _RPYKPVVL_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3056945800781 2 486.30547 970.596387 0.98815 0.00048054 0.11819 5.7477E-05 1.1063 0.00053802 486.3054594716647 34.833 0.29903 30.738 30.599 30.898 -4.0951 28 17 2 0 0 0 0.48669 1 20157 20157 36.044 9.7029 1 6536300 54529 1031 36668 37489 63358 63358 0.10991244927799926 RPYKPVVLL 9 Unmodified _RPYKPVVLL_ 0 0 0 nc|ENSG00000070495|Q6NYC1-2|JMJD6;ENSG00000070495|ENST00000397625|JMJD6;nc|ENSG00000070495|Q6NYC1-3|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 nc|ENSG00000070495|Q6NYC1-2|JMJD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8472290039062 2 542.847502 1083.68045 1.3492 0.0007324 -0.51925 -0.00028187 0.82994 0.00045053 542.8469721568238 46.715 0.26162 46.682 46.572 46.834 -0.033417 26 12 3 0 0 0 0.047196 1 25153 25153 46.021 17.534 1 3113700 54530 1031 36669 37490 63359 63359 0.1419577602471236 RPYNEPTNAQF 11 Unmodified _RPYNEPTNAQF_ 0 0 0 ENSG00000215114|ENST00000399598|UBXN2B;ENST00000451057.1_1_7:156990296-156991186:-|nuORF ENSG00000215114|ENST00000399598|UBXN2B ENSG00000215114|ENST00000399598|UBXN2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.8181762695312 2 668.817658 1335.62076 -1.0037 -0.00067129 2.6914 0.0018001 1.6877 0.0011288 668.819085937001 32.155 0.23953 32.155 32.002 32.242 0 27 11 3 0 0 0 0.029988 1 16750 16750 55.235 31.445 1 2876100 54531 10520 36670 37491 63360 63360 -0.0336219144730876 RPYPSPGAVL 10 Unmodified _RPYPSPGAVL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1;ENST00000463529.4_1_X:48760076-48760358:+|nuORF nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.795654296875 2 528.795466 1055.57638 NaN NaN NaN NaN NaN NaN NaN 45.548 1 45.224 44.724 45.724 -0.32425 0 0 0 0.50527 1 24338 24338 29.841 8.3036 1 54532 2017 36671 37492 63361 63361 0.0508144919717779 RPYPSPGAVL 10 Unmodified _RPYPSPGAVL_ 0 0 0 nc|ENSG00000102103|O60828-5|PQBP1;nc|ENSG00000102103|O60828-4|PQBP1;nc|ENSG00000102103|O60828-2|PQBP1;ENSG00000102103|ENST00000447146|PQBP1;ENST00000463529.4_1_X:48760076-48760358:+|nuORF nc|ENSG00000102103|O60828-5|PQBP1 nc|ENSG00000102103|O60828-5|PQBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2648315429688 2 528.795466 1055.57638 1.0632 0.00056219 -0.73408 -0.00038818 0.32907 0.00017401 528.7952598665457 50.872 0.40726 45.223 44.958 45.366 -5.649 38 24 2 0 0 0 0.22994 1 31955 31955 13.615 6.3256 1 28801000 54533 2017 36671 37492 63362 63362 0.0508144919717779 RPYPVMRKI 9 Oxidation (M) _RPYPVM(Oxidation (M))RKI_ RPYPVM(1)RKI RPYPVM(44)RKI 0 0 1 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5627136230469 3 392.562104 1174.66448 1.3617 0.00053456 0.78729 0.00030906 2.149 0.00084362 392.5623123878684 19.864 0.32589 17.207 17.043 17.369 -2.6564 59 19 4 0 0 0 0.05483 1 10508 10508 43.772 34.796 1 8997900 54534 8041 36672 37493 63363 63363 1369 0.08413746516134779 RPYPVMRKI 9 Unmodified _RPYPVMRKI_ 0 0 0 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 ENSG00000170915|ENST00000442253|PAQR8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2312927246094 3 387.230466 1158.66957 1.0541 0.00040817 1.8231 0.00070596 2.8772 0.0011141 387.2317224271896 28.391 0.49502 25.243 25.097 25.592 -3.1482 37 25 2 0 0 0 0.094149 1 15924 15924 26.021 4.4306 1 10904000 54535 8041 36672 37494 63364 63364 0.09658050378766347 RPYQPLGAL 9 Unmodified _RPYQPLGAL_ 0 0 0 ENSG00000095906|ENST00000262302|NUBP2 ENSG00000095906|ENST00000262302|NUBP2 ENSG00000095906|ENST00000262302|NUBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7880554199219 2 507.790184 1013.56581 -0.020232 -1.0274E-05 -1.6812 -0.00085371 -1.7015 -0.00086398 507.78915721624367 48.954 0.16943 48.582 48.446 48.616 -0.37172 14 8 2 0 0 0 0.10734 1 26316 26316 32.305 5.4218 1 1945400 54536 1663 36673 37495 63365 63365 0.05957466542747625 RPYRFYFYMWK 11 Unmodified _RPYRFYFYMWK_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.413330078125 2 828.910839 1655.80712 -0.13026 -0.00010797 1.5789 0.0013088 1.4487 0.0012008 828.9122623001502 101.38 0.10974 101.25 101.2 101.3 -0.13293 16 4 4 0 0 0 0.7453 1 55332 55332 0 0 1 3940600 54537 9908 36674 37496 63366 63366 0.005453341874954276 RPYRFYFYMWK 11 Unmodified _RPYRFYFYMWK_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2786865234375 3 552.942985 1655.80712 0.46927 0.00025948 0.97216 0.00053755 1.4414 0.00079703 552.9433200209476 101.38 0.10974 101.25 101.2 101.3 -0.13293 11 4 3 0 0 0 0.7453 1 55335 55335 0 0 1 1768800 54538 9908 36674 37496 63367 63367 0.005453341874954276 RPYRFYFYMWK 11 Unmodified _RPYRFYFYMWK_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 828.91259765625 2 828.910839 1655.80712 -0.13014 -0.00010788 0.7621 0.00063171 0.63195 0.00052383 828.9114658355564 101.85 0.10613 101.73 101.68 101.79 -0.11613 10 4 3 0 0 0 0.7453 1 55584 55584 0 0 1 1848300 54539 9908 36674 37496 63368 63368 0.005453341874954276 RPYRQDRKE 9 Unmodified _RPYRQDRKE_ 0 0 0 REV__ATP9A|p.Q698Pfs*24|1|0.06|ENSG00000054793|chr20:51622089-51622096|GATGTCTT/-|frameshift_variant REV__ATP9A|p.Q698Pfs*24|1|0.06|ENSG00000054793|chr20:51622089-51622096|GATGTCTT/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5589904785156 3 416.558299 1246.65307 0.44009 0.00018332 0.85121 0.00035458 1.2913 0.0005379 416.55859995150956 16.574 0.11952 14.017 13.945 14.065 -2.557 31 18 2 0 0 0 0.55886 1 8582 8582 3.8763 0.55669 1 3798500 + 54540 16738 36675 37497 63369 63369 0.039606407463679716 RPYSFFTKL 9 Unmodified _RPYSFFTKL_ 0 0 0 ENSG00000144029|ENST00000272418|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;nc|ENSG00000144029|P82675-2|MRPS5 ENSG00000144029|ENST00000272418|MRPS5;nc|ENSG00000144029|P82675-2|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8821411132812 3 386.88172 1157.62333 0.28186 0.00010905 0.68608 0.00026543 0.96794 0.00037448 386.8821667575889 54.814 0.24282 54.747 54.6 54.843 -0.066936 19 11 2 0 0 0 0.047194 1 29777 29777 46.022 31.617 1 2956100 54541 5576;16246 36676 37498 63370 63370 0.050823087483195195 RPYSFFTKL 9 Unmodified _RPYSFFTKL_ 0 0 0 ENSG00000144029|ENST00000272418|MRPS5;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;nc|ENSG00000144029|P82675-2|MRPS5 ENSG00000144029|ENST00000272418|MRPS5;nc|ENSG00000144029|P82675-2|MRPS5 ENSG00000144029|ENST00000272418|MRPS5 MSMS AL20221201_MKP_PDAC_01 4 386.8819580078125 3 386.88172 1157.62333 NaN NaN NaN NaN NaN NaN NaN 85.158 1 78.982 78.482 79.482 -6.1757 0 0 0 0.18257 1 56068 56068 32.898 20.723 1 54542 5576;16246 36676 37498 63371 63371 0.050823087483195195 RPYSKQVSY 9 Unmodified _RPYSKQVSY_ 0 0 0 nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 MSMS AL20221201_MKP_PDAC_01 4 564.296630859375 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 19.662 1 17.005 16.505 17.505 -2.6564 0 0 0 0.27852 1 10434 10434 26.268 11.43 1 54543 7785 36677 37499 63372 63372 0.018882438462242135 RPYTNKVITL 10 Unmodified _RPYTNKVITL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.855712890625 2 602.856055 1203.69756 -0.10576 -6.376E-05 0.13534 8.1588E-05 0.029573 1.7828E-05 602.8560260904645 37.978 0.20778 37.995 37.902 38.11 0.01704 23 9 3 0 0 0 0.10078 1 20176 20176 45.74 27.594 1 3205200 54544 918;7592 36678 37500 63373 63373 0.10385651839851562 RPYTNKVITL 10 Unmodified _RPYTNKVITL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2399291992188 3 402.239796 1203.69756 -0.18255 -7.343E-05 0.20942 8.4239E-05 0.026872 1.0809E-05 402.23963542476787 37.984 0.22905 38.001 37.881 38.11 0.01704 26 10 3 0 0 0 0.14944 1 20185 20185 39.923 30.947 1 4829500 54545 918;7592 36678 37500 63374 63374 0.10385651839851562 RPYTNKVITL 10 Unmodified _RPYTNKVITL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2401733398438 3 402.239796 1203.69756 0.80335 0.00032314 -0.49633 -0.00019964 0.30702 0.0001235 402.239633068317 42.221 0.35814 37.536 37.351 37.709 -4.6846 38 22 2 0 0 0 0.084474 1 25475 25475 50.13 35.912 1 15704000 54546 918;7592 36678 37500 63375 63375 0.10385651839851562 RPYTNKVITL 10 Unmodified _RPYTNKVITL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.8572998046875 2 602.856055 1203.69756 0.10649 6.42E-05 -0.18658 -0.00011248 -0.080091 -4.8283E-05 602.8560403452233 42.247 0.28785 37.563 37.39 37.678 -4.6846 22 17 2 0 0 0 0.048562 1 25491 25491 67.838 43.818 1 8274600 54547 918;7592 36678 37500 63376 63376 0.10385651839851562 RQADKVWRL 9 Unmodified _RQADKVWRL_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-4|NFIA;nc|ENSG00000141905|P08651-4|NFIC;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENSG00000141905|ENST00000443272|NFIC;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-2|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000147862|O00712-4|NFIB nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000162599|Q12857-2|NFIA;nc|ENSG00000141905|P08651-4|NFIC;ENSG00000147862|ENST00000380953|NFIB nc|ENSG00000141905|P08651-4|NFIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2279052734375 3 391.228001 1170.66217 -0.18755 -7.3374E-05 -0.66006 -0.00025823 -0.84761 -0.00033161 391.2282416870364 30.386 0.35537 30.416 30.207 30.563 0.030104 50 15 5 0 0 0 0.20389 1 15820 15820 22.775 10.6 1 4589900 54548 392;5379;5886;6878 36679 37501 63377 63377 0.08367034102707294 RQAWCCCFC 9 Unmodified _RQAWCCCFC_ 0 0 0 ENST00000373874.6_1_20:35220052-35220253:+|nuORF ENST00000373874.6_1_20:35220052-35220253:+|nuORF ENST00000373874.6_1_20:35220052-35220253:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8044128417969 3 373.804554 1118.39183 NaN NaN NaN NaN NaN NaN NaN 75.558 1 75.606 75.106 76.106 0.047943 0 0 0 0.85798 1 41671 41671 0.23584 0.095952 1 54549 12427 36680 37502 63378 63378 -0.16262844812558797 RQDLQRHWL 9 Unmodified _RQDLQRHWL_ 0 0 0 ENST00000462722.5_1_9:131597926-131600079:-|nuORF ENST00000462722.5_1_9:131597926-131600079:-|nuORF ENST00000462722.5_1_9:131597926-131600079:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.8963928222656 3 417.895022 1250.66324 NaN NaN NaN NaN NaN NaN NaN 22.389 1 19.611 19.111 20.111 -2.7784 0 0 0 0.82739 1 12040 12040 2.4985 0 1 54550 13686 36681 37503 63379 63379 0.04793248471605693 RQDWTLHFPSL 11 Unmodified _RQDWTLHFPSL_ 0 0 0 REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.3585815429688 2 700.359493 1398.70443 0.42916 0.00030056 -0.48527 -0.00033986 -0.056112 -3.9299E-05 700.3589562032109 62.571 0.30389 62.549 62.413 62.717 -0.021614 46 15 4 0 0 0 0.65096 1 34171 34171 10.8 2.644 1 39300000 + 54551 27531 36682 37504 63380 63380 0.02102964720415912 RQDWTLHFPSL 11 Unmodified _RQDWTLHFPSL_ 0 0 0 REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF REV__ENST00000473097.5_1_1:1288733-1289815:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.8619995117188 2 700.359493 1398.70443 0.61217 0.00042874 -0.17735 -0.00012421 0.43482 0.00030453 700.3596218664759 92.238 0.27665 86.062 85.89 86.166 -6.1757 39 16 4 0 0 0 0.58245 1 60937 60937 10.8 0 1 45182000 + 54552 27531 36682 37504 63381 63381 0.02102964720415912 RQEPMRMWMDW 11 Unmodified _RQEPMRMWMDW_ 0 0 0 REV__ENSG00000085998|ENST00000371984|POMGNT1 REV__ENSG00000085998|ENST00000371984|POMGNT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.3456420898438 2 783.344148 1564.67374 NaN NaN NaN NaN NaN NaN NaN 107.4 1 107.35 106.85 107.85 -0.047607 0 0 0 0.94307 1 59506 59506 0.30703 0.30703 1 + 54553 17760 36683 37505 63382 63382 -0.08600596252153991 RQEPYANVL 9 Unmodified _RQEPYANVL_ 0 0 0 REV__ENSG00000165120|ENST00000297819|SSMEM1 REV__ENSG00000165120|ENST00000297819|SSMEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.1968078613281 3 363.861096 1088.56146 1.8862 0.00068632 0.66184 0.00024082 2.5481 0.00092714 363.86066729969224 37.419 0.23351 33.136 33.023 33.256 -4.2835 21 13 2 0 0 0 0.10734 1 21992 21992 23.79 0 1 6044900 + 54554 21983 36684 37506 63383 63383 0.020719573291671622 RQEPYANVL 9 Unmodified _RQEPYANVL_ 0 0 0 REV__ENSG00000165120|ENST00000297819|SSMEM1 REV__ENSG00000165120|ENST00000297819|SSMEM1 MSMS AL20221201_MKP_PDAC_01 4 545.2885131835938 2 545.288005 1088.56146 NaN NaN NaN NaN NaN NaN NaN 37.409 1 33.126 32.626 33.626 -4.2835 0 0 0 0.08978 1 21956 21956 46.021 3.9264 1 + 54555 21983 36684 37506 63384 63384 0.020719573291671622 RQEQLELTL 9 Unmodified _RQEQLELTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.314208984375 2 565.31422 1128.61389 0.63205 0.00035731 0.16357 9.2466E-05 0.79562 0.00044977 565.3143948229969 42.411 0.26444 42.411 42.279 42.544 0 20 12 3 0 0 0 0.060956 1 22927 22927 31.268 7.2478 1 1933200 54556 4022 36685 37507 63385 63385 0.054724956721202034 RQEQLELTL 9 Unmodified _RQEQLELTL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 565.31422 1128.61389 0.63205 0.00035731 0.16357 9.2466E-05 0.79562 0.00044977 565.3143948229969 42.411 0.26444 42.411 42.279 42.544 0 0 0 NaN 31.268 20 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1933200 54557 4022 36685 37507 0.054724956721202034 RQERQRFAE 9 Unmodified _RQERQRFAE_ 0 0 0 ENSG00000175513|ENST00000532620|TSGA10IP ENSG00000175513|ENST00000532620|TSGA10IP ENSG00000175513|ENST00000532620|TSGA10IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.213623046875 3 407.214532 1218.62177 NaN NaN NaN NaN NaN NaN NaN 12.663 1 12.663 12.163 13.163 0 0 0 0 0.85852 1 5993 5993 0.20686 0.066965 1 54558 8522 36686 37508 63386 63386 0.021200677122806155 RQFEVKFEV 9 Unmodified _RQFEVKFEV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5484313964844 3 394.548629 1180.62406 -0.0087912 -3.4686E-06 0.99409 0.00039222 0.98529 0.00038875 394.54909686196254 51.651 0.18841 51.218 51.097 51.285 -0.43367 25 9 3 0 0 0 0.014763 1 27834 27834 68.76 47.17 1 13271000 54559 2781 36687 37509 63387 63387 0.040971033973846716 RQFEVKFEV 9 Unmodified _RQFEVKFEV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3196411132812 2 591.319306 1180.62406 -0.0077949 -4.6093E-06 0.55408 0.00032764 0.54629 0.00032303 591.3191155829215 51.664 0.24574 51.23 51.079 51.325 -0.43367 27 12 3 0 0 0 0.010362 1 27844 27844 96.367 44.737 1 9987400 54560 2781 36687 37509 63388 63388 0.040971033973846716 RQFEVKFEV 9 Unmodified _RQFEVKFEV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3192138671875 2 591.319306 1180.62406 NaN NaN NaN NaN NaN NaN NaN 51.307 1 51.253 50.753 51.753 -0.053871 0 0 0 0.34575 1 27764 27764 29.841 0.759 1 54561 2781 36687 37509 63389 63389 0.040971033973846716 RQFEVKFEV 9 Unmodified _RQFEVKFEV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5498962402344 3 394.548629 1180.62406 0.96109 0.0003792 -0.26849 -0.00010593 0.6926 0.00027326 394.5486469452225 56.553 0.32994 50.576 50.338 50.668 -5.9769 30 18 2 0 0 0 0.030186 1 36044 36044 55.249 45.098 1 26705000 54562 2781 36687 37509 63390 63390 0.040971033973846716 RQFRDPEY 8 Unmodified _RQFRDPEY_ 0 0 0 ENSG00000102032|ENST00000393700|RENBP;nc|ENSG00000102032|P51606-3|RENBP ENSG00000102032|ENST00000393700|RENBP ENSG00000102032|ENST00000393700|RENBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.77001953125 2 555.76998 1109.52541 0.4655 0.00025871 0.79914 0.00044414 1.2646 0.00070285 555.7702262004137 96.733 0.43262 96.733 96.562 96.995 0 30 24 2 0 0 0 0.80722 1 53440 53440 2.3027 0 1 477130 54563 2011 36688 37510 63391 63391 -0.024974998476636756 RQFRQYLI 8 Unmodified _RQFRQYLI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2174377441406 3 375.217214 1122.62981 -0.55953 -0.00020995 -0.43543 -0.00016338 -0.99496 -0.00037333 375.2169806903468 18.816 0.13496 18.839 18.778 18.913 0.023106 44 18 3 0 0 0 0.80505 1 9444 9444 3.5965 0.0094347 1 1844900 + 54564 22772 36689 37511 63392 63392 0.07340246699709496 RQFRQYLI 8 Unmodified _RQFRQYLI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2166442871094 3 375.217214 1122.62981 0.06182 2.3196E-05 -1.4046 -0.00052702 -1.3428 -0.00050383 375.2167186850878 18.842 0.13409 18.848 18.767 18.901 0.0060463 15 6 3 0 0 0 0.79982 1 9567 9567 6.7232 1.8262 1 2019200 + 54565 22772 36689 37511 63393 63393 0.07340246699709496 RQFRQYLI 8 Unmodified _RQFRQYLI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 375.217214 1122.62981 0.06182 2.3196E-05 -1.4046 -0.00052702 -1.3428 -0.00050383 375.2167186850878 18.842 0.13409 18.848 18.767 18.901 0.0060463 0 0 NaN 6.7232 15 6 3 NaN NaN NaN NaN 0 NaN NaN 0 2019200 + 54566 22772 36689 37511 0.07340246699709496 RQFWWMGDLHW 11 Unmodified _RQFWWMGDLHW_ 0 0 0 ENST00000354293.9_1_19:50310018-50310102:+|nuORF ENST00000354293.9_1_19:50310018-50310102:+|nuORF ENST00000354293.9_1_19:50310018-50310102:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 781.3628540039062 2 781.361513 1560.70847 0.17181 0.00013424 0.81161 0.00063416 0.98342 0.00076841 781.8631400004762 67.417 0.1651 67.417 67.294 67.459 0 9 6 2 0 0 0 0.74203 1 37597 37597 0.30703 0.03801 1 553990 54567 12060 36690 37512 63394 63394 -0.04945269057498081 RQGPCAGL 8 Unmodified _RQGPCAGL_ 0 0 0 ENST00000433465.1_1_21:46713271-46716280:+|nuORF ENST00000433465.1_1_21:46713271-46716280:+|nuORF ENST00000433465.1_1_21:46713271-46716280:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2045593261719 2 401.20543 800.396307 -0.55837 -0.00022402 0.89269 0.00035815 0.33433 0.00013413 401.2047829600792 41.351 0.47416 41.351 41.045 41.519 0 46 23 3 0 0 0 0.80676 1 22254 22254 2.5775 0 1 9952500 54568 13289 36691 37513 63395 63395 -0.01187553011448017 RQHEVEWQ 8 Unmodified _RQHEVEWQ_ 0 0 0 ENSG00000137842|ENST00000260403|TMEM62;ENST00000567441.5_3_15:43426167-43441319:+|nuORF;ENST00000570109.1_1_15:43426051-43427957:+|nuORF ENSG00000137842|ENST00000260403|TMEM62 ENSG00000137842|ENST00000260403|TMEM62 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2898559570312 2 556.267604 1110.52066 0.3738 0.00020793 -1.541 -0.0008572 -1.1672 -0.00064927 556.2664570672523 62.198 0.26083 62.198 62.044 62.304 0 17 13 2 0 0 0 8.7369 1 34662 34662 7.9102 0 1 2300400 54569 4981 36692 37514 63396 63396 -0.030183839904339038 RQHRVLVSV 9 Unmodified _RQHRVLVSV_ 0 0 0 REV__ENSG00000251247|ENST00000420450|ZNF345 REV__ENSG00000251247|ENST00000420450|ZNF345 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8154296875 2 547.333082 1092.65161 NaN NaN NaN NaN NaN NaN NaN 101.6 1 101.55 101.05 102.05 -0.045853 0 0 0 0.84369 1 56444 56444 2.3027 0.4585 1 + 54570 24503 36693 37515 63397 63397 0.10899051448291175 RQHVETFFQK 10 Unmodified _RQHVETFFQK_ 0 0 0 nc|ENSG00000185774|Q6PIL6-3|KCNIP4;nc|ENSG00000185774|Q6PIL6-2|KCNIP4;nc|ENSG00000185774|Q6PIL6-5|KCNIP4;nc|ENSG00000185774|Q6PIL6-4|KCNIP4;ENSG00000185774|ENST00000382152|KCNIP4 nc|ENSG00000185774|Q6PIL6-3|KCNIP4 nc|ENSG00000185774|Q6PIL6-3|KCNIP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5685729980469 3 440.566683 1318.67822 NaN NaN NaN NaN NaN NaN NaN 102.08 1 102.04 101.54 102.54 -0.045853 0 0 0 0.99248 1 56704 56704 0.62683 0.17231 1 54571 9410 36694 37516 63398 63398 0.03162695548940064 RQIDDILSV 9 Unmodified _RQIDDILSV_ 0 0 0 ENSG00000117448|ENST00000351829|AKR1A1;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1;ENST00000497973.5_1_1:46032543-46034819:+|nuORF ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7996826171875 2 529.795663 1057.57677 0.67661 0.00035847 2.7147 0.0014382 3.3913 0.0017967 529.7975173867934 57.606 0.18962 57.606 57.467 57.657 0 18 9 2 0 0 0 0.025842 1 32028 32028 57.722 7.789 1 15861000 54572 3304;14408 36695 37517 63399 63399 0.05028824126384279 RQIEVLTTV 9 Unmodified _RQIEVLTTV_ 0 0 0 nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-2|ITPRID2 nc|ENSG00000138434|P28290-2|ITPRID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.81494140625 2 529.813856 1057.61316 0.90813 0.00048114 -0.43118 -0.00022845 0.47694 0.00025269 529.8137728840989 47.743 0.43146 47.743 47.601 48.032 0 35 20 3 0 0 0 0.030212 1 26189 26189 60.074 16.216 1 4391000 54573 5054 36696 37518 63400 63400 0.08665701023051042 RQIEVLTTV 9 Unmodified _RQIEVLTTV_ 0 0 0 nc|ENSG00000138434|P28290-2|ITPRID2;nc|ENSG00000138434|P28290-3|ITPRID2;ENSG00000138434|ENST00000431877|ITPRID2;ENST00000440623.5_1_2:182756982-182781157:+|nuORF nc|ENSG00000138434|P28290-2|ITPRID2 nc|ENSG00000138434|P28290-2|ITPRID2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 529.813856 1057.61316 1.1545 0.00061169 -1.8036 -0.00095557 -0.64905 -0.00034388 529.8131178217537 53.565 0.25685 47.761 47.676 47.933 -5.8042 0.0089642 -0.00084943 NaN 60.074 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 14647000 54574 5054 36696 37518 0.08665701023051042 RQIHSFYF 8 Unmodified _RQIHSFYF_ 0 0 0 REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7 REV__nc|ENSG00000118997|Q8WXX0-4|DNAH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.281494140625 2 549.279983 1096.54541 NaN NaN NaN NaN NaN NaN NaN 81.451 1 80.958 80.458 81.458 -0.49247 0 0 0 0.97444 1 44602 44602 2.8892 0 1 + 54575 29599 36697 37519 63401 63401 0.0010029588295310532 RQIPLLIV 8 Unmodified _RQIPLLIV_ 0 0 0 REV__ENST00000033079.7_2_5:137288358-137289125:-|nuORF REV__ENST00000033079.7_2_5:137288358-137289125:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.3220825195312 2 476.32112 950.627687 NaN NaN NaN NaN NaN NaN NaN 101.42 1 101.29 100.79 101.79 -0.13293 0 0 0 0.97444 1 55351 55351 0.69038 0 1 + 54576 24705 36698 37520 63402 63402 0.1503981796191738 RQIQMAAK 8 Unmodified _RQIQMAAK_ 0 0 0 REV__ENSG00000160961|ENST00000292530|ZNF333 REV__ENSG00000160961|ENST00000292530|ZNF333 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2665405273438 2 473.268561 944.52257 0.018607 8.806E-06 -2.9315 -0.0013874 -2.9129 -0.0013786 473.267053028376 18.991 0.11171 18.997 18.935 19.046 0.0060463 8 5 2 0 0 0 0.79783 1 9651 9651 7.9102 1.187 1 782210 + 54577 21576 36699 37521 63403 63403 0.04808953493818535 RQIRKIRQKF 10 Unmodified _RQIRKIRQKF_ 0 0 0 nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ENST00000473795.1_1_7:87082258-87104781:-|nuORF nc|ENSG00000005471|P21439-3|ABCB4 nc|ENSG00000005471|P21439-3|ABCB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2924499511719 3 458.293117 1371.85752 NaN NaN NaN NaN NaN NaN NaN 2.5292 1 2.5292 2.0292 3.0292 0 0 0 0 1.0024 1 1229 1229 0.13989 0 1 54578 310 36700 37522 63404 63404 0.1864662462751312 RQIRPHWMFVL 11 Unmodified _RQIRPHWMFVL_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000476509.1_1_1:27683440-27684058:-|nuORF;ENST00000470890.1_1_1:27683440-27683647:-|nuORF nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2796936035156 3 494.943208 1481.80779 -0.10895 -5.3923E-05 -0.10612 -5.2524E-05 -0.21507 -0.00010645 494.9431500683299 25.532 0.45085 22.649 22.371 22.822 -2.8831 72 24 4 0 0 0 0.71503 2 13909 13909;14020 2.8433 0.82369 1 29847000 54579 5445 36701 37523 63405;63406 63405 0.08616173627206081 RQKCPPWWYR 10 Unmodified _RQKCPPWWYR_ 0 0 0 nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A nc|ENSG00000169432|Q15858-4|SCN9A nc|ENSG00000169432|Q15858-4|SCN9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 710.3607177734375 2 710.358773 1418.70299 NaN NaN NaN NaN NaN NaN NaN 92.552 1 92.552 92.052 93.052 0 0 0 0 1.0024 1 51177 51177 0.40072 0 1 54580 7873 36702 37524 63407 63407 0.010390521506678851 RQKENAMCEK 10 Unmodified _RQKENAMCEK_ 0 0 0 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 ENSG00000176979|ENST00000512596|TRIM60 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8651428222656 3 412.865635 1235.57508 NaN NaN NaN NaN NaN NaN NaN 13.241 1 13.251 12.751 13.751 0.0096512 0 0 0 1.0024 1 6530 6530 0.13989 0 1 54581 8642 36703 37525 63408 63408 -0.033288762255551774 RQKFWKKV 8 Unmodified _RQKFWKKV_ 0 0 0 REV__ENST00000554144.5_1_4:57514888-57516908:-|nuORF REV__ENST00000554144.5_1_4:57514888-57516908:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 560.3654174804688 2 560.342918 1118.67128 NaN NaN NaN NaN NaN NaN NaN 107.21 1 101.04 100.54 101.54 -6.1757 0 0 0 0.97444 1 71725 71725 0.69038 0.16561 1 + 54582 28748 36704 37526 63409 63409 0.11669427459014514 RQKKLLKK 8 Unmodified _RQKKLLKK_ 0 0 0 nc|ENSG00000174678|A6NHR8|FAM47DP nc|ENSG00000174678|A6NHR8|FAM47DP nc|ENSG00000174678|A6NHR8|FAM47DP MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.36669921875 2 521.366393 1040.71823 1.6716 0.00087152 0.57208 0.00029826 2.2437 0.0011698 521.3666256528292 105.67 0.34668 99.499 99.396 99.742 -6.1757 44 37 2 0 0 0 0.81107 1 70771 70771 0 0 1 4729500 54583 16393 36705 37527 63410 63410 0.1995028701019237 RQKKLLKK 8 Unmodified _RQKKLLKK_ 0 0 0 nc|ENSG00000174678|A6NHR8|FAM47DP nc|ENSG00000174678|A6NHR8|FAM47DP nc|ENSG00000174678|A6NHR8|FAM47DP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.366393 1040.71823 2.9167 0.0015207 -2.3752 -0.0012384 0.54147 0.0002823 521.3661374031942 99.736 0.1321 99.7 99.639 99.771 -0.036308 0.10041 -0.0029833 NaN 0 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 833850 54584 16393 36705 37527 0.1995028701019237 RQKLLEYY 8 Unmodified _RQKLLEYY_ 0 0 0 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 REV__nc|ENSG00000144045|Q8TE96-3|DQX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5420227050781 3 371.541475 1111.60259 1.2676 0.00047095 0.70462 0.00026179 1.9722 0.00073275 371.54169381230855 46.735 0.36567 46.702 46.572 46.938 -0.033417 33 17 2 0 0 0 0.80859 1 25252 25252 1.4819 0 1 23205000 + 54585 20689 36706 37528 63411 63411 0.051257183686630015 RQKQIAVAL 9 Unmodified _RQKQIAVAL_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.824462890625 2 513.824558 1025.63456 -0.1986 -0.00010204 -0.49099 -0.00025228 -0.68958 -0.00035432 513.8242753894492 42.135 0.24057 41.828 41.701 41.941 -0.30682 28 11 3 0 0 0 0.087258 1 22332 22332 36.044 1.6425 1 40504000 + 54586 22439 36707 37529 63412 63412 0.12277130842448969 RQKQIAVAL 9 Unmodified _RQKQIAVAL_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8242797851562 2 513.824558 1025.63456 0.034179 1.7562E-05 -0.074245 -3.8149E-05 -0.040066 -2.0587E-05 513.8243403528514 41.81 0.26665 41.808 41.701 41.968 -0.0017929 39 12 4 0 0 0 0.010877 1 22338 22338 77.984 7.6523 1 40662000 + 54587 22439 36707 37529 63413 63413 0.12277130842448969 RQKQIAVAL 9 Unmodified _RQKQIAVAL_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8245239257812 2 513.824558 1025.63456 0.36155 0.00018577 -0.11496 -5.9071E-05 0.24658 0.0001267 513.8245526013378 46.404 0.53645 41.324 40.938 41.475 -5.0805 87 43 3 0 0 0 0.023164 2 28759 28610;28759 60.39 6.5568 1 239440000 + 54588 22439 36707 37529 63414;63415 63415 0.12277130842448969 RQKQIAVAL 9 Unmodified _RQKQIAVAL_ 0 0 0 REV__ENSG00000169933|ENST00000675598|FRMPD4 REV__ENSG00000169933|ENST00000675598|FRMPD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 513.824558 1025.63456 -0.0074513 -3.8286E-06 -0.5191 -0.00026673 -0.52655 -0.00027055 513.8246252182789 41.991 0.14919 41.991 41.881 42.03 0 0.11479 -0.00022234 NaN 77.984 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2002000 + 54589 22439 36707 37529 0.12277130842448969 RQKRDPAFTY 10 Unmodified _RQKRDPAFTY_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.3397827148438 2 641.338561 1280.66257 0.55284 0.00035456 0.91998 0.00059002 1.4728 0.00094458 642.3411451803095 81.341 0.20487 80.849 80.77 80.975 -0.49248 16 8 3 0 0 0 0.71123 1 44589 44589 1.6526 0 1 479510 54590 3532 36708 37530 63416 63416 0.033464090319057505 RQKRKLLG 8 Unmodified _RQKRKLLG_ 0 0 0 REV__ENSG00000004848|ENST00000379044|ARX REV__ENSG00000004848|ENST00000379044|ARX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8341064453125 2 499.832717 997.650882 NaN NaN NaN NaN NaN NaN NaN 37.624 1 37.641 37.141 38.141 0.01704 0 0 0 0.77249 1 19981 19981 24.674 0 1 + 54591 16954 36709 37531 63417 63417 0.15196256799231378 RQKRRRRHRKL 11 Unmodified _RQKRRRRHRKL_ 0 0 0 REV__ENSG00000004975|ENST00000005340|DVL2 REV__ENSG00000004975|ENST00000005340|DVL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.6773681640625 3 530.676847 1589.00871 1.5649 0.00083043 -0.57716 -0.00030628 0.9877 0.00052415 530.6764842757133 107.94 0.053909 101.77 101.75 101.8 -6.1757 10 8 2 0 0 0 0.7453 1 72171 72171 0 0 1 1913000 + 54592 16958 36710 37532 63418 63418 0.2377662377875822 RQKRRRRHRKL 11 Unmodified _RQKRRRRHRKL_ 0 0 0 REV__ENSG00000004975|ENST00000005340|DVL2 REV__ENSG00000004975|ENST00000005340|DVL2 MSMS AL20221201_MKP_PDAC_01 4 530.6773681640625 3 530.676847 1589.00871 NaN NaN NaN NaN NaN NaN NaN 107.56 1 101.38 100.88 101.88 -6.1757 0 0 0 0.9435 1 71932 71932 0 0 1 + 54593 16958 36710 37532 63419 63419 0.2377662377875822 RQKRRRRKHK 10 Unmodified _RQKRRRRKHK_ 0 0 0 REV__nc|ENSG00000107404|O14640-2|DVL1 REV__nc|ENSG00000107404|O14640-2|DVL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.9874572753906 4 362.986901 1447.9185 0.47211 0.00017137 0.26712 9.6962E-05 0.73923 0.00026833 362.9869878624382 42.5 0.74458 42.5 41.992 42.737 0 71 37 2 0 0 0 0.72482 3 22941 22812;22941;23063 0.13989 0 1 16840000 + 54594 18560 36711 37533 63420;63421;63422 63421 0.21245574450313143 RQKTRPLIPE 10 Unmodified _RQKTRPLIPE_ 0 0 0 nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B;ENST00000589104.5_1_19:5070919-5151519:+|nuORF nc|ENSG00000127663|O94953|KDM4B nc|ENSG00000127663|O94953|KDM4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2503662109375 3 413.250695 1236.73025 1.7021 0.00070338 -0.4621 -0.00019096 1.24 0.00051241 413.25040410833 93.613 0.65829 93.636 93.354 94.012 0.022987 65 26 3 0 0 0 0.72247 2 51999 51999;52099 0.13989 0 1 2057100 54595 4024 36712 37534 63423;63424 63423 0.12135858962687962 RQKVLGPKGRV 11 Unmodified _RQKVLGPKGRV_ 0 0 0 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2670593261719 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 1.0076 1 1.0076 0.50764 1.5076 0 0 0 0 0.94307 1 489 489 0.08335 0 1 + 54596 17731 36713 37535 63425 63425 0.16895557953557727 RQKVLGPKGRV 11 Unmodified _RQKVLGPKGRV_ 0 0 0 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2669982910156 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 1.3595 1 1.3595 0.85946 1.8595 0 0 0 0 0.94307 1 661 661 0.08335 0 1 + 54597 17731 36713 37535 63426 63426 0.16895557953557727 RQKVLGPKGRV 11 Unmodified _RQKVLGPKGRV_ 0 0 0 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2665100097656 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 3.8219 1 3.7498 3.2498 4.2498 -0.072029 0 0 0 0.94307 1 1886 1886 0.08335 0 1 + 54598 17731 36713 37535 63427 63427 0.16895557953557727 RQKVLGPKGRV 11 Unmodified _RQKVLGPKGRV_ 0 0 0 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 REV__nc|ENSG00000084112|Q8WYL5-4|SSH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2661743164062 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 3.9647 1 3.9584 3.4584 4.4584 -0.0062969 0 0 0 0.94307 1 2010 2010 0.08335 0 1 + 54599 17731 36713 37535 63428 63428 0.16895557953557727 RQKYKKMKK 9 Unmodified _RQKYKKMKK_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2551574707031 3 413.256904 1236.74888 NaN NaN NaN NaN NaN NaN NaN 84.529 1 84.029 83.529 84.529 -0.49961 0 0 0 0.86031 1 46256 46256 0.23584 0.076522 1 54600 932 36714 37536 63429 63429 0.1399769733291123 RQLCIYWTI 9 Carbamidomethyl (C) _RQLC(Carbamidomethyl (C))IYWTI_ RQLC(1)IYWTI RQLC(65)IYWTI 0 1 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3314208984375 2 626.828983 1251.64341 0.98506 0.00061746 -1.0611 -0.00066514 -0.076057 -4.7675E-05 626.8283683669767 95.277 0.43906 89.101 88.912 89.351 -6.1757 53 24 3 0 0 0 0.018301 1 63053 63053 65.235 17.641 1 26088000 54601 2781 36715 37537 63430 63430 288 0.027657364166316256 RQLEEEGITFV 11 Unmodified _RQLEEEGITFV_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.8426513671875 2 660.843342 1319.67213 -0.35378 -0.00023379 -0.22448 -0.00014834 -0.57826 -0.00038214 660.843314692903 56.346 0.31223 56.346 56.162 56.474 0 36 14 4 0 0 0 0.20815 2 31286 31286;31397 31.636 17.23 1 11908000 54602 4157 36716 37538 63431;63432 63431 0.025081325267365173 RQLEEEGITFV 11 Unmodified _RQLEEEGITFV_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.8452758789062 2 660.843342 1319.67213 1.7093 0.0011296 0.20607 0.00013618 1.9153 0.0012657 660.8433313620309 62.638 0.51956 56.462 56.156 56.676 -6.1757 56 26 3 0 0 0 0.14064 2 40456 40320;40456 37.771 16.234 1 22140000 54603 4157 36716 37538 63433;63434 63434 0.025081325267365173 RQLEHKGPY 9 Unmodified _RQLEHKGPY_ 0 0 0 ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT ENSG00000184428|ENST00000329245|TOP1MT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5369873046875 3 376.536724 1126.58834 NaN NaN NaN NaN NaN NaN NaN 21.692 1 21.714 21.214 22.214 0.022896 0 0 0 0.84564 1 11015 11015 1.0715 0.61312 1 54604 9256 36717 37539 63435 63435 0.030110659403817408 RQLEQTNY 8 Unmodified _RQLEQTNY_ 0 0 0 ENST00000416282.2_1_3:38180152-38182096:+|nuORF;nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88;ENST00000484513.1_1_3:38181817-38182096:+|nuORF;ENST00000481122.5_1_3:38180729-38182774:+|nuORF ENST00000416282.2_1_3:38180152-38182096:+|nuORF ENST00000416282.2_1_3:38180152-38182096:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2627563476562 2 526.261988 1050.50942 0.040105 2.1106E-05 -0.27833 -0.00014648 -0.23823 -0.00012537 526.2619608536418 23.654 0.52591 23.654 23.367 23.893 0 109 26 6 0 0 0 0.80143 1 11971 11971 5.7604 0 1 34684000 54605 8271 36718 37540 63436 63436 -0.013812060845793894 RQLFPPPL 8 Unmodified _RQLFPPPL_ 0 0 0 REV__ENST00000310924.6_1_17:77925300-77926551:-|nuORF REV__ENST00000310924.6_1_17:77925300-77926551:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2901916503906 2 484.28982 966.565087 NaN NaN NaN NaN NaN NaN NaN 31.573 1 31.603 31.103 32.103 0.030106 0 0 0 0.97444 1 16550 16550 2.8892 0 1 + 54606 25422 36719 37541 63437 63437 0.08046671893703206 RQLGLPTTL 9 Unmodified _RQLGLPTTL_ 0 0 0 MRTO4|p.A161T|1|0.18|ENSG00000053372|chr1:19257972-19257972|G/A|missense_variant MRTO4|p.A161T|1|0.18|ENSG00000053372|chr1:19257972-19257972|G/A|missense_variant MRTO4|p.A161T|1|0.18|ENSG00000053372|chr1:19257972-19257972|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8031311035156 2 499.803291 997.59203 0.21391 0.00010691 -0.23419 -0.00011705 -0.02028 -1.0136E-05 499.8031572797828 26.055 0.40078 23.104 22.88 23.281 -2.9511 61 25 3 0 0 0 0.16226 1 14209 14209 26.884 2.2098 1 49056000 54607 15999 36720 37542 63438 63438 0.09313735714226823 RQLKDEAIV 9 Unmodified _RQLKDEAIV_ 0 0 0 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 ENSG00000107872|ENST00000369956|FBXL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8767395019531 3 357.876746 1070.60841 1.1806 0.00042252 -0.87961 -0.00031479 0.30101 0.00010772 358.210594133012 27.183 0.26968 24.147 23.949 24.219 -3.0365 25 13 3 0 0 0 0.12424 1 14989 14989 28.495 0 1 23911000 54608 2525 36721 37543 63439 63439 0.07592816880310238 RQLLGYEQLL 10 Unmodified _RQLLGYEQLL_ 0 0 0 REV__ENSG00000196453|ENST00000247930|ZNF777;REV__nc|ENSG00000291118|Q75MW2-2|ZNF767P;REV__ENSG00000170260|ENST00000335870|ZNF212;REV__ENSG00000170265|ENST00000610704|ZNF282 REV__ENSG00000170265|ENST00000610704|ZNF282 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5722961425781 3 411.571434 1231.69247 0.24185 9.9538E-05 1.2526 0.00051555 1.4945 0.00061509 411.57210721296457 40.572 0.62949 40.577 40.088 40.717 0.0050545 39 29 2 0 0 0 0.71535 1 21398 21398 0.50596 0.09769 1 3044900 + 54609 22463;23830;27354;22461 36722 37544 63440 63440 0.08589347977249417 RQLNEVLSI 9 Unmodified _RQLNEVLSI_ 0 0 0 ENST00000527431.1_1_11:9406310-9430044:+|nuORF ENST00000527431.1_1_11:9406310-9430044:+|nuORF ENST00000527431.1_1_11:9406310-9430044:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.3117065429688 2 536.31148 1070.60841 0.20306 0.0001089 0.10158 5.4479E-05 0.30464 0.00016338 536.3113475180456 55.102 0.22601 54.624 54.548 54.774 -0.47798 24 10 3 0 0 0 0.1685 1 29899 29899 26.268 2.2476 1 2053800 54610 14835 36723 37545 63441 63441 0.07592816880332975 RQLRAVAL 8 Unmodified _RQLRAVAL_ 0 0 0 REV__nc|ENSG00000176771|O14513-2|NCKAP5 REV__nc|ENSG00000176771|O14513-2|NCKAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7993469238281 2 463.798343 925.582134 1.092 0.00050646 -0.18582 -8.6185E-05 0.90615 0.00042027 463.7982609785225 40.769 0.50972 36.24 36.001 36.511 -4.5294 82 31 3 0 0 0 0.74163 1 24276 24276 13.508 0 1 88625000 + 54611 22943 36724 37546 63442 63442 0.11636592499496601 RQLREYQEL 9 Unmodified _RQLREYQEL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;CON__Q9NSB2 CON__P05787;CON__H-INV:HIT000292931;ENSG00000135480|ENST00000331817|KRT7;CON__Q9NSB2 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.2229614257812 3 412.222805 1233.64658 -0.66185 -0.00027283 1.1229 0.00046288 0.46104 0.00019005 412.22313490969606 26.907 0.14795 26.907 26.824 26.972 0 12 6 2 0 0 0 0.46162 1 13858 13858 9.544 0 1 1509600 + 54612 165;199;150;211 36725 37547 63443 63443 0.03910702794996723 RQLRRRWRRRR 11 Unmodified _RQLRRRWRRRR_ 0 0 0 REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF REV__ENST00000597330.1_1_19:58557520-58558126:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.0272827148438 2 848.02798 1694.04141 NaN NaN NaN NaN NaN NaN NaN 99.893 1 99.857 99.357 100.36 -0.036301 0 0 0 0.9435 1 55485 55485 0 0 1 + 54613 29226 36726 37548 63444 63444 0.22214830901589266 RQLRYRRLVRL 11 Unmodified _RQLRYRRLVRL_ 0 0 0 REV__ENSG00000177971|ENST00000403490|IMP3 REV__ENSG00000177971|ENST00000403490|IMP3 MSMS AL20221201_MKP_PDAC_01 4 510.3272399902344 3 510.32682 1527.95863 NaN NaN NaN NaN NaN NaN NaN 108.59 1 102.42 101.92 102.92 -6.1757 0 0 0 0.9435 1 72571 72571 0 0 1 + 54614 23012 36727 37549 63445 63445 0.21577076330231648 RQLSLDINK 9 Unmodified _RQLSLDINK_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;ENST00000469132.1_1_6:32947542-32947941:+|nuORF;ENST00000482838.1_1_6:32947542-32948492:+|nuORF;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000204256|P25440-4|BRD2 ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8185424804688 2 543.81693 1085.61931 -0.2139 -0.00011632 2.4917 0.001355 2.2778 0.0012387 543.8181648729027 70.029 0.2455 69.55 69.382 69.627 -0.47903 19 13 2 0 0 0 0.10247 1 38279 38279 32.786 0 1 3718500 54615 5378;10254 36728 37550 63446 63446 0.07992219254606425 RQLVHLERHQ 10 Unmodified _RQLVHLERHQ_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7695617675781 3 439.249577 1314.7269 0.37322 0.00016394 1.1473 0.00050393 1.5205 0.00066787 439.2502932616728 34.374 0.14978 34.401 34.286 34.435 0.027401 10 6 2 0 0 0 0.23946 1 18083 18083 3.5871 0 1 1114800 54616 10054 36729 37551 63447 63447 0.08212608908706898 RQLVLRWR 8 Unmodified _RQLVLRWR_ 0 0 0 REV__nc|ENSG00000242612|Q9NUI1-2|DECR2 REV__nc|ENSG00000242612|Q9NUI1-2|DECR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2371826171875 3 376.23672 1125.68833 NaN NaN NaN NaN NaN NaN NaN 83.657 1 83.657 83.157 84.157 0 0 0 0 0.97444 1 46391 46391 0.45834 0 1 + 54617 29970 36730 37552 63448 63448 0.13051348064846024 RQLVLRWR 8 Unmodified _RQLVLRWR_ 0 0 0 REV__nc|ENSG00000242612|Q9NUI1-2|DECR2 REV__nc|ENSG00000242612|Q9NUI1-2|DECR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.238037109375 3 376.23672 1125.68833 NaN NaN NaN NaN NaN NaN NaN 84.825 1 84.325 83.825 84.825 -0.49961 0 0 0 0.97444 1 46416 46416 0.45834 0 1 + 54618 29970 36730 37552 63449 63449 0.13051348064846024 RQLVNLLRPL 10 Unmodified _RQLVNLLRPL_ 0 0 0 REV__nc|ENSG00000198929|O75052-3|NOS1AP REV__nc|ENSG00000198929|O75052-3|NOS1AP MSMS AL20221201_MKP_PDAC_01 4 611.3922119140625 2 611.393139 1220.77173 NaN NaN NaN NaN NaN NaN NaN 106.97 1 100.8 100.3 101.3 -6.1757 0 0 0 1.0024 1 71578 71578 0.40072 0 1 + 54619 24101 36731 37553 63450 63450 0.1701703972200903 RQMVERTVF 9 Unmodified _RQMVERTVF_ 0 0 0 REV__ENST00000493138.5_1_1:228328018-228335361:+|nuORF REV__ENST00000493138.5_1_1:228328018-228335361:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2084655761719 3 389.209731 1164.60736 0.417 0.0001623 0.31609 0.00012303 0.73309 0.00028533 389.20984420212073 52.838 0.29483 52.775 52.624 52.919 -0.063423 40 14 3 0 0 0 0.55144 1 28710 28710 2.4985 0 1 16306000 + 54620 20667 36732 37554 63451 63451 0.03164279239786083 RQNLRKYFF 9 Unmodified _RQNLRKYFF_ 0 0 0 REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF REV__ENST00000474906.2_1_6:76388527-76407234:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.572265625 3 424.571768 1270.69348 1.1428 0.00048521 0.31048 0.00013182 1.4533 0.00061703 424.5719535960693 91.085 0.79386 84.909 84.577 85.371 -6.1757 110 45 3 0 0 0 0.48152 2 60212 60212;60477 13.042 0.80181 1 65107000 + 54621 18831 36733 37555 63452;63453 63452 0.06895607136789295 RQPIRDRIQIF 11 Unmodified _RQPIRDRIQIF_ 0 0 0 nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF;ENST00000470373.1_1_1:1564879-1565907:+|nuORF;ENST00000511502.5_1_1:1563563-1565907:+|nuORF nc|ENSG00000197530|Q96AX9-4|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2848205566406 3 481.284398 1440.83137 -0.53556 -0.00025776 0.66172 0.00031847 0.12615 6.0715E-05 481.2844317158056 101.36 0.1636 101.32 101.19 101.35 -0.04216 18 5 4 0 0 0 0.74429 1 56312 56312 0.094841 0 1 9769000 54622 9964 36734 37556 63454 63454 0.128583106654105 RQPLLGWFPH 10 Unmodified _RQPLLGWFPH_ 0 0 0 REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.56396484375 3 417.564614 1249.67201 0.052085 2.1749E-05 -0.99288 -0.00041459 -0.94079 -0.00039284 417.56440461989456 58.995 0.17035 58.995 58.924 59.095 0 11 7 2 0 0 0 0.69377 1 32895 32895 3.5871 1.6807 1 644580 + 54623 26554 36735 37557 63455 63455 0.05716222108094371 RQPLLGWFPH 10 Unmodified _RQPLLGWFPH_ 0 0 0 REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF REV__ENST00000398058.5_1_21:45374496-45374712:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.56396484375 3 417.564614 1249.67201 0.10926 4.5625E-05 -0.90978 -0.00037989 -0.80052 -0.00033427 417.56442076497586 66.25 0.23631 66.25 66.135 66.372 0 18 10 2 0 0 0 0.69377 1 36971 36971 1.7423 0.41263 1 1454000 + 54624 26554 36735 37557 63456 63456 0.05716222108094371 RQPLLRRS 8 Unmodified _RQPLLRRS_ 0 0 0 REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF REV__ENST00000375114.7_1_20:32667742-32668009:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3217163085938 2 513.319974 1024.6254 1.4593 0.00074908 2.5562 0.0013121 4.0155 0.0020612 513.321237888156 104.61 0.078438 98.435 98.398 98.476 -6.1757 5 3 2 0 0 0 0.80722 1 70060 70060 2.3027 0 1 4719800 + 54625 26195 36736 37558 63457 63457 0.11406782276799277 RQPPRPVDI 9 Unmodified _RQPPRPVDI_ 0 0 0 REV__ENST00000416702.1_1_10:21318681-21319128:+|nuORF REV__ENST00000416702.1_1_10:21318681-21319128:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3132934570312 2 539.311815 1076.60908 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.68 103.18 104.18 -0.048737 0 0 0 0.85359 1 57604 57604 2.0598 1.2661 1 + 54626 26777 36737 37559 63458 63458 0.07383656320052978 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8145751953125 2 580.81419 1159.61383 0.23764 0.00013803 -0.37367 -0.00021703 -0.13603 -7.9006E-05 580.8139759401898 51.343 0.41222 51.29 51.067 51.479 -0.053871 61 20 4 0 0 0 0.010611 2 27711 27711;27814 78.728 38.771 1 41869000 54627 9954 36738 37560 63459;63460 63459 0.040405404628018005 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5453186035156 3 387.545219 1159.61383 -0.27555 -0.00010679 2.2178 0.00085949 1.9422 0.0007527 387.54531566815166 51.317 0.3537 51.263 51.067 51.421 -0.053871 37 17 3 0 0 0 0.06187 2 27713 27713;27815 31.268 7.4786 1 25481000 54628 9954 36738 37560 63461;63462 63461 0.040405404628018005 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.880126953125 3 387.545219 1159.61383 0.6312 0.00024462 0.23965 9.2875E-05 0.87085 0.00033749 387.54530689775254 56.022 0.3837 50.101 49.893 50.277 -5.9211 48 22 3 0 0 0 0.016184 2 35628 35628;35762 51.63 38.015 1 30614000 54629 9954 36738 37560 63463;63464 63463 0.040405404628018005 RQPSLFYHL 9 Unmodified _RQPSLFYHL_ 0 0 0 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5;ENSG00000180815|ENST00000338883|MAP3K15 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8145141601562 2 580.81419 1159.61383 0.22236 0.00012915 0.24215 0.00014065 0.46451 0.00026979 580.8144256173824 56.075 0.36691 50.125 49.864 50.231 -5.9499 47 21 3 0 0 0 0.036857 2 35653 35653;35792 51.63 11.672 1 44801000 54630 9954 36738 37560 63465;63466 63465 0.040405404628018005 RQPVYYDEL 9 Unmodified _RQPVYYDEL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7938232421875 2 591.793121 1181.57169 -0.33317 -0.00019717 0.21131 0.00012505 -0.12185 -7.2112E-05 591.7934045914466 44.619 0.27639 44.619 44.472 44.749 0 40 14 4 0 0 0 0.0026776 1 24248 24248 128.37 82.344 1 49048000 54631 5560 36739 37561 63467 63467 -0.011834797362325844 RQPVYYDEL 9 Unmodified _RQPVYYDEL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.79345703125 2 591.793121 1181.57169 NaN NaN NaN NaN NaN NaN NaN 44.752 1 44.752 44.252 45.252 0 0 0 0 0.16996 1 24366 24366 34.402 9.0024 1 54632 5560 36739 37561 63468 63468 -0.011834797362325844 RQPYIWLTI 9 Unmodified _RQPYIWLTI_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3397216796875 2 595.340041 1188.66553 0.0060442 3.5984E-06 -0.61762 -0.0003677 -0.61158 -0.0003641 595.3395973342109 83.505 0.18648 83.568 83.491 83.678 0.063171 8 6 2 0 0 0 0.05447 1 46238 46238 43.858 15.371 1 3670000 54633 1335 36740 37562 63469 63469 0.07874284156696376 RQPYIWLTI 9 Unmodified _RQPYIWLTI_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 595.3002319335938 2 595.340041 1188.66553 -0.13841 -8.24E-05 0.32752 0.00019499 0.18911 0.00011259 595.3391603276816 98.789 0.11337 92.613 92.535 92.648 -6.1757 13 8 2 0 0 0 0.17718 1 65588 65588 20.454 6.5476 1 35359000 54634 1335 36740 37562 63470 63470 0.07874284156696376 RQQCDYEY 8 Unmodified _RQQCDYEY_ 0 0 0 REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF REV__ENST00000415128.6_1_6:142623466-142692070:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7249145507812 2 552.724381 1103.43421 NaN NaN NaN NaN NaN NaN NaN 48.027 1 48.027 47.527 48.527 0 0 0 0 0.97444 1 26325 26325 2.5775 0 1 + 54635 26754 36741 37563 63471 63471 -0.11337131607319861 RQQHSRDGALE 11 Unmodified _RQQHSRDGALE_ 0 0 0 CON__Q2UVX4 CON__Q2UVX4 CON__Q2UVX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8838806152344 3 432.884963 1295.63306 NaN NaN NaN NaN NaN NaN NaN 14.062 1 14.07 13.57 14.57 0.0073986 0 0 0 0.9435 1 6957 6957 0 0 1 + 54636 196 36742 37564 63472 63472 -0.0029315498420601216 RQQQNKEKC 9 Unmodified _RQQQNKEKC_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8641357421875 3 387.864623 1160.57204 1.2067 0.00046805 -1.2299 -0.00047702 -0.023133 -8.9726E-06 387.8638666320995 39.485 0.4552 35.034 34.811 35.267 -4.4509 91 27 4 0 0 0 0.49272 1 23493 23493 4.897 0 1 205800000 54637 6148 36743 37565 63473 63473 -0.0018238328802908654 RQQRKPRKE 9 Unmodified _RQQRKPRKE_ 0 0 0 REV__ENST00000489228.1_1_6:50789578-50789641:+|nuORF REV__ENST00000489228.1_1_6:50789578-50789641:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 613.3690795898438 2 613.365444 1224.71634 NaN NaN NaN NaN NaN NaN NaN 106.33 1 100.15 99.655 100.65 -6.1757 0 0 0 0.85798 1 71180 71180 0.52476 0 1 + 54638 27855 36744 37566 63474 63474 0.11296626254261355 RQQYVAYSLY 10 Unmodified _RQQYVAYSLY_ 0 0 0 REV__P4HA1|p.G219R|1|0.07|ENSG00000122884|chr10:73053399-73053399|C/T|missense_variant REV__P4HA1|p.G219R|1|0.07|ENSG00000122884|chr10:73053399-73053399|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 430.8879089355469 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 28.384 1 25.235 24.735 25.735 -3.1482 0 0 0 0.94014 1 15829 15829 3.3196 0 1 + 54639 30067 36745 37567 63475 63475 0.007201845634881465 RQRAGPEEF 9 Unmodified _RQRAGPEEF_ 0 0 0 REV__nc|ENSG00000183873|Q14524-5|SCN5A REV__nc|ENSG00000183873|Q14524-5|SCN5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.271728515625 2 545.275429 1088.53631 NaN NaN NaN NaN NaN NaN NaN 89.33 1 88.828 88.328 89.328 -0.50171 0 0 0 0.84564 1 48842 48842 2.0598 0.21551 1 + 54640 23384 36746 37568 63476 63476 -0.004420974733875482 RQRAWRRWGWL 11 Unmodified _RQRAWRRWGWL_ 0 0 0 REV__ENST00000308497.8_1_4:184826565-184826772:+|nuORF REV__ENST00000308497.8_1_4:184826565-184826772:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 785.93115234375 2 785.93436 1569.85417 NaN NaN NaN NaN NaN NaN NaN 101.07 1 100.93 100.43 101.43 -0.13293 0 0 0 0.94307 1 55160 55160 0.30703 0.30703 1 + 54641 25399 36747 37569 63477 63477 0.0920337457353071 RQRFRQFGYH 10 Unmodified _RQRFRQFGYH_ 0 0 0 ENSG00000166529|ENST00000292450|ZSCAN21 ENSG00000166529|ENST00000292450|ZSCAN21 ENSG00000166529|ENST00000292450|ZSCAN21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.86279296875 2 697.863069 1393.71158 0.2346 0.00016372 -1.0572 -0.0007378 -0.82263 -0.00057408 697.86231896875 45.594 0.19102 45.566 45.49 45.681 -0.028011 13 9 2 0 0 0 0.52888 1 24509 24509 14.838 7.7366 1 5381400 54642 7505 36748 37570 63478 63478 0.03047742111516527 RQRGGGGGGCG 11 Unmodified _RQRGGGGGGCG_ 0 0 0 REV__ENST00000471578.5_1_1:224622371-224703543:+|nuORF REV__ENST00000471578.5_1_1:224622371-224703543:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2226867675781 2 481.222674 960.430795 NaN NaN NaN NaN NaN NaN NaN 13.29 1 13.3 12.8 13.8 0.0096512 0 0 0 0.9435 1 6556 6556 0 0 1 + 54643 27494 36749 37571 63479 63479 -0.051003368706119545 RQRKALEKT 9 Unmodified _RQRKALEKT_ 0 0 0 REV__ENSG00000182095|ENST00000430969|TNRC18 REV__ENSG00000182095|ENST00000430969|TNRC18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5509033203125 3 377.231523 1128.67274 0.40005 0.00015091 2.0324 0.00076668 2.4325 0.0009176 377.2331395565854 48.12 0.075798 48.081 48.026 48.102 -0.038643 5 3 2 0 0 0 0.21846 1 25926 25926 2.086 0.34373 1 298030 + 54644 23240 36750 37572 63480 63480 0.11355016757124758 RQRLRKIHRLR 11 Unmodified _RQRLRKIHRLR_ 0 0 0 REV__nc|ENSG00000103197|P49815-7|TSC2 REV__nc|ENSG00000103197|P49815-7|TSC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 766.49609375 2 766.497659 1530.98076 NaN NaN NaN NaN NaN NaN NaN 18.1 1 18.1 17.6 18.6 0 0 0 0 0.9435 1 8974 8974 0 0 1 + 54645 18291 36751 37573 63481 63481 0.23651300798678676 RQRQAVSI 8 Unmodified _RQRQAVSI_ 0 0 0 REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2850036621094 2 479.283057 956.551562 0.35294 0.00016916 0.78641 0.00037691 1.1393 0.00054607 479.2833825586908 70.5 3.2351 70.023 69.759 72.995 -0.47736 498 162 6 0 0 0 0.67481 1 39208 39208 19.439 19.439 1 2468000000 + 54646 28346 36752 37574 63482 63482 0.0715481411446035 RQRQAVSI 8 Unmodified _RQRQAVSI_ 0 0 0 REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF REV__ENST00000525183.1_1_11:75848287-75852454:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 479.283057 956.551562 0.15862 7.6023E-05 0.88966 0.0004264 1.0483 0.00050242 479.2834081499504 70.014 3.0251 70.014 69.754 72.779 0 -0.0045066 4.1234E-05 NaN 19.439 542 196 6 NaN NaN NaN NaN 0 NaN NaN 0 2051399999.9999998 + 54647 28346 36752 37574 0.0715481411446035 RQRRAAPF 8 Unmodified _RQRRAAPF_ 0 0 0 ENST00000566525.5_1_16:770611-770875:+|nuORF ENST00000566525.5_1_16:770611-770875:+|nuORF ENST00000566525.5_1_16:770611-770875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2914123535156 2 501.291217 1000.56788 0.089991 4.5112E-05 -0.37491 -0.00018794 -0.28492 -0.00014283 501.2910217646255 72.879 0.87537 72.921 72.193 73.068 0.041725 62 41 2 0 0 0 0.80975 1 39902 39902 0.79363 0 1 3693700 54648 15419 36753 37575 63483 63483 0.06761940071226036 RQRRFFFNRRQ 11 Unmodified _RQRRFFFNRRQ_ 0 0 0 REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF REV__ENST00000493035.5_1_2:172864861-172928621:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 805.9491577148438 2 805.947998 1609.88144 NaN NaN NaN NaN NaN NaN NaN 100.12 1 93.945 93.445 94.445 -6.1757 0 0 0 0.94184 1 66882 66882 1.1933 0.84271 1 + 54649 22682 36754 37576 63484 63484 0.10089858113906303 RQRRSRRL 8 Unmodified _RQRRSRRL_ 0 0 0 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 ENSG00000189431|ENST00000529419|RASSF10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2257080078125 3 376.570873 1126.69079 1.0476 0.00039449 1.0004 0.00037674 2.048 0.00077122 376.5718312443378 49.782 0.20084 49.733 49.665 49.865 -0.048824 15 9 2 0 0 0 8.7369 1 26967 26967 3.2813 0.99853 1 842750 54650 9750 36755 37577 63485 63485 0.13251196522514874 RQRVYPKCT 9 Unmodified _RQRVYPKCT_ 0 0 0 ENSG00000141002|ENST00000263346|TCF25;ENST00000566751.5_1_16:89952312-89961474:+|nuORF ENSG00000141002|ENST00000263346|TCF25 ENSG00000141002|ENST00000263346|TCF25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1926879882812 3 384.209842 1149.6077 NaN NaN NaN NaN NaN NaN NaN 18.895 1 18.918 18.418 19.418 0.023106 0 0 0 0.84564 1 9504 9504 1.0715 0 1 54651 5296 36756 37578 63486 63486 0.03887698959624686 RQSRSPFY 8 Unmodified _RQSRSPFY_ 0 0 0 REV__ENST00000216484.6_1_14:77978077-77978326:-|nuORF REV__ENST00000216484.6_1_14:77978077-77978326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7684326171875 2 520.76724 1039.51993 0.38787 0.00020199 0.82092 0.00042751 1.2088 0.0006295 520.7674794118919 77.495 1.029 77.495 77.215 78.244 0 213 59 5 0 0 0 0.78849 1 43275 43275 9.3474 0 1 724960000 + 54652 24742 36757 37579 63487 63487 0.0017482136054240982 RQSRYYARETL 11 Unmodified _RQSRYYARETL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.8804321289062 2 721.878582 1441.74261 0.070929 5.1202E-05 2.3639 0.0017065 2.4349 0.0017577 721.8805289557441 59.109 0.1653 59.109 59.004 59.169 0 10 6 2 0 0 0 0.69838 1 32952 32952 2.7352 2.4282 1 600320 + 54653 24420 36758 37580 63488 63488 0.03940850635081006 RQSRYYARETL 11 Unmodified _RQSRYYARETL_ 0 0 0 REV__ENSG00000235194|ENST00000452015|PPP1R3E REV__ENSG00000235194|ENST00000452015|PPP1R3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.8821411132812 2 721.878582 1441.74261 -0.097841 -7.0629E-05 2.7113 0.0019572 2.6134 0.0018866 721.8804630124188 65.106 0.25316 65.106 64.994 65.247 0 22 10 3 0 0 0 0.65706 1 36316 36316 14.405 6.7964 1 1406300 + 54654 24420 36758 37580 63489 63489 0.03940850635081006 RQTHGPPGCLP 11 Unmodified _RQTHGPPGCLP_ 0 0 0 ENST00000296490.7_1_3:52290609-52290768:-|nuORF ENST00000296490.7_1_3:52290609-52290768:-|nuORF ENST00000296490.7_1_3:52290609-52290768:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5306701660156 3 388.197713 1161.57131 1.0818 0.00041996 -0.79127 -0.00030717 0.29055 0.00011279 388.1995945074761 22.245 0.31711 19.51 19.32 19.638 -2.7348 38 16 4 0 0 0 0.557 1 11964 11964 13.519 3.2034 1 5244400 54655 11510 36759 37581 63490 63490 -0.0030117793708086538 RQTPRTMVD 9 Unmodified _RQTPRTMVD_ 0 0 0 REV__ENST00000393067.7_1_11:111249957-111250164:-|nuORF REV__ENST00000393067.7_1_11:111249957-111250164:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.5258178710938 3 368.525719 1102.55533 NaN NaN NaN NaN NaN NaN NaN 20.177 1 17.52 17.02 18.02 -2.6564 0 0 0 0.53226 1 10736 10736 10.151 0 1 + 54656 26410 36760 37582 63491 63491 0.008151158260261582 RQTQLLLR 8 Unmodified _RQTQLLLR_ 0 0 0 ENST00000221980.4_1_19:10403354-10403878:+|nuORF ENST00000221980.4_1_19:10403354-10403878:+|nuORF ENST00000221980.4_1_19:10403354-10403878:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3240356445312 2 514.322183 1026.62981 1.488 0.00076532 2.46 0.0012652 3.948 0.0020306 514.3231315480953 107.43 0.04261 101.25 101.24 101.28 -6.1757 10 8 2 0 0 0 0.81007 1 71862 71862 0.6015 0 1 1341400 54657 11035 36761 37583 63492 63492 0.11756246699701478 RQTSSSAPLPM 11 Unmodified _RQTSSSAPLPM_ 0 0 0 REV__ENSG00000198092|ENST00000356291|TMPRSS11F REV__ENSG00000198092|ENST00000356291|TMPRSS11F MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2723388671875 2 587.79788 1173.58121 0.84361 0.00049587 1.1808 0.00069404 2.0244 0.0011899 587.7988846678918 54.542 0.24983 54.542 54.44 54.689 0 24 10 3 0 0 0 0.29817 1 30360 30360 8.1555 0 1 1456200 + 54658 23989 36762 37584 63493 63493 0.0013596527762729238 RQTWSEADCYK 11 Unmodified _RQTWSEADCYK_ 0 0 0 REV__nc|ENSG00000162946|Q9NRI5-3|DISC1 REV__nc|ENSG00000162946|Q9NRI5-3|DISC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.8761596679688 3 462.875076 1385.6034 0.62928 0.00029128 0.089694 4.1517E-05 0.71898 0.0003328 462.87542279210396 18.174 0.32357 15.552 15.386 15.709 -2.6215 75 24 5 0 0 0 0.65846 1 9517 9517 4.1166 1.4854 1 9668200 + 54659 29741 36763 37585 63494 63494 -0.07397855044609969 RQVEKAWAL 9 Unmodified _RQVEKAWAL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3154296875 2 550.81419 1099.61383 -0.27352 -0.00015066 0.57328 0.00031577 0.29977 0.00016512 550.8144787394826 36.858 0.23902 36.609 36.49 36.729 -0.2497 36 10 5 0 0 0 0.094149 1 19344 19344 34.402 9.0024 1 9725100 54660 974 36764 37586 63495 63495 0.06800540462791105 RQVEKAWAL 9 Unmodified _RQVEKAWAL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5453491210938 3 367.545219 1099.61383 -0.34827 -0.00012801 0.76236 0.0002802 0.41409 0.0001522 367.54541476595654 36.835 0.23902 36.585 36.49 36.729 -0.2497 18 10 2 0 0 0 0.03568 1 19349 19349 63.961 35.466 1 3199800 54661 974 36764 37586 63496 63496 0.06800540462791105 RQVEKAWAL 9 Unmodified _RQVEKAWAL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8134155273438 2 550.81419 1099.61383 NaN NaN NaN NaN NaN NaN NaN 36.565 1 36.586 36.086 37.086 0.021545 0 0 0 0.27852 1 19376 19376 26.268 10.421 1 54662 974 36764 37586 63497 63497 0.06800540462791105 RQVEKAWAL 9 Unmodified _RQVEKAWAL_ 0 0 0 nc|ENSG00000068120|Q13057-2|COASY;ENSG00000068120|ENST00000393818|COASY;ENST00000591753.1_2_17:40715869-40717983:+|nuORF nc|ENSG00000068120|Q13057-2|COASY nc|ENSG00000068120|Q13057-2|COASY MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5455322265625 3 367.545219 1099.61383 0.90572 0.00033289 -0.19238 -7.0709E-05 0.71334 0.00026218 367.54522575954707 39.842 0.39948 35.313 35.044 35.444 -4.5294 43 25 3 0 0 0 0.14 2 23628 23628;23756 33.445 5.8161 1 23999000 54663 974 36764 37586 63498;63499 63498 0.06800540462791105 RQVIERMFL 9 Unmodified _RQVIERMFL_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8941955566406 3 397.893742 1190.6594 -0.11203 -4.4577E-05 0.30346 0.00012075 0.19143 7.6169E-05 397.89398678244333 15.979 0.26011 15.984 15.871 16.131 0.0050564 79 22 5 0 0 0 0.58466 1 8047 8047 1.1933 0.68739 1 28665000 54664 1325 36765 37587 63500 63500 0.07169442653548685 RQVWKRRAE 9 Unmodified _RQVWKRRAE_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.238037109375 3 410.2389 1227.69487 NaN NaN NaN NaN NaN NaN NaN 68.908 1 68.908 68.408 69.408 0 0 0 0 0.85447 1 38400 38400 0.96228 0 1 54665 3202 36766 37588 63501 63501 0.09013241225557067 RQWAGIAV 8 Unmodified _RQWAGIAV_ 0 0 0 ENST00000354230.7_1_7:99698191-99698365:-|nuORF ENST00000354230.7_1_7:99698191-99698365:-|nuORF ENST00000354230.7_1_7:99698191-99698365:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7570495605469 2 450.756144 899.497735 0.51429 0.00023182 1.8322 0.00082587 2.3465 0.0010577 450.7568300539986 66.244 0.22215 66.244 66.175 66.397 0 15 9 2 0 0 0 0.80624 1 36963 36963 2.8892 0 1 1132300 54666 12059 36767 37589 63502 63502 0.043966416827515786 RQWAGIAV 8 Unmodified _RQWAGIAV_ 0 0 0 ENST00000354230.7_1_7:99698191-99698365:-|nuORF ENST00000354230.7_1_7:99698191-99698365:-|nuORF ENST00000354230.7_1_7:99698191-99698365:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 450.756144 899.497735 1.3735 0.0006191 0.70711 0.00031873 2.0806 0.00093784 450.7563112799 66.051 0.31117 66.06 65.891 66.202 0.0095596 -0.091812 -0.00033061 NaN 2.8892 29 15 3 NaN NaN NaN NaN 0 NaN NaN 0 7848700 54667 12059 36767 37589 0.043966416827515786 RQWAQIPY 8 Unmodified _RQWAQIPY_ 0 0 0 REV__ENSG00000119714|ENST00000650645|GPR68 REV__ENSG00000119714|ENST00000650645|GPR68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2791137695312 2 531.279983 1060.54541 0.34772 0.00018474 -0.86425 -0.00045916 -0.51653 -0.00027442 531.279454810893 86.216 0.33553 86.216 86.043 86.379 0 32 16 3 0 0 0 0.80232 1 47799 47799 5.2307 0.90143 1 819010 + 54668 19206 36768 37590 63503 63503 0.017562958829330455 RQWARRVWRFF 11 Unmodified _RQWARRVWRFF_ 0 0 0 REV__ENSG00000185955|ENST00000332375|SPACDR REV__ENSG00000185955|ENST00000332375|SPACDR MSMS AL20221201_MKP_PDAC_01 4 804.447265625 2 804.44456 1606.87457 NaN NaN NaN NaN NaN NaN NaN 99.13 1 92.954 92.454 93.454 -6.1757 0 0 0 0.94301 1 65925 65925 0.35063 0.043601 1 + 54669 23539 36769 37591 63504 63504 0.09540545233312514 RQWEHGPLS 9 Unmodified _RQWEHGPLS_ 0 0 0 REV__ENST00000250340.8_1_19:51228779-51228962:+|nuORF REV__ENST00000250340.8_1_19:51228779-51228962:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2781982421875 2 555.277972 1108.54139 0.67435 0.00037445 -1.214 -0.0006741 -0.53964 -0.00029965 555.2773784953698 48.306 0.33079 47.934 47.771 48.102 -0.37172 52 16 5 0 0 0 0.25681 1 25969 25969 19.257 1.8143 1 34611000 + 54670 24877 36770 37592 63505 63505 -0.008537936107586575 RQWHLIRNE 9 Unmodified _RQWHLIRNE_ 0 0 0 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 MSMS AL20221201_MKP_PDAC_01 4 417.8971862792969 3 417.895022 1250.66324 NaN NaN NaN NaN NaN NaN NaN 18.146 1 15.525 15.025 16.025 -2.6215 0 0 0 0.83329 1 9541 9541 2.086 0 1 + 54671 29520 36771 37593 63506 63506 0.04793248471605693 RQWHLIRNE 9 Unmodified _RQWHLIRNE_ 0 0 0 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28 MSMS AL20221201_MKP_PDAC_01 4 417.8975219726562 3 417.895022 1250.66324 NaN NaN NaN NaN NaN NaN NaN 18.703 1 16.081 15.581 16.581 -2.6215 0 0 0 0.83329 1 9868 9868 2.086 0 1 + 54672 29520 36771 37593 63507 63507 0.04793248471605693 RQYLKDSVL 9 Unmodified _RQYLKDSVL_ 0 0 0 REV__nc|ENSG00000089041|Q99572-3|P2RX7 REV__nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8213500976562 2 561.319306 1120.62406 0.87186 0.00048939 0.21975 0.00012335 1.0916 0.00061275 561.8204266855199 100.81 0.15625 100.77 100.71 100.87 -0.04216 6 5 2 0 0 0 0.60485 1 56030 56030 0.52476 0 1 1118400 + 54673 17825 36772 37594 63508 63508 0.06857103397373976 RRAAATTG 8 Unmodified _RRAAATTG_ 0 0 0 ENSG00000101493|ENST00000443185|ZNF516 ENSG00000101493|ENST00000443185|ZNF516 ENSG00000101493|ENST00000443185|ZNF516 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2268981933594 2 402.227751 802.440949 1.6825 0.00067674 -0.75319 -0.00030296 0.92928 0.00037378 402.2270544029581 108.89 0.5457 102.72 102.24 102.79 -6.1757 117 82 3 0 0 0 0.80992 1 72673 72673 0.69038 0 1 3243200 54674 1973 36773 37595 63509 63509 0.031825941262127344 RRAEAESMY 9 Unmodified _RRAEAESMY_ 0 0 0 CON__H-INV:HIT000292931 CON__H-INV:HIT000292931 CON__H-INV:HIT000292931 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.760986328125 2 556.761297 1111.50804 0.4453 0.00024793 0.17616 9.8077E-05 0.62146 0.000346 556.7615760338308 88.523 0.35448 88.523 88.383 88.738 0 31 17 2 0 0 0 0.58865 1 48924 48924 2.0598 0 1 402670 + 54675 150 36774 37596 63510 63510 -0.043251634449688936 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2483215332031 2 406.248486 810.48242 0.016418 6.6699E-06 -0.099461 -4.0406E-05 -0.083043 -3.3736E-05 406.2483018942953 76.577 0.56974 76.098 75.909 76.479 -0.47945 88 33 4 0 0 0 0.81107 2 41858 41858;41969 0 0 1 13392000 + 54676 25201 36775 37597 63511;63512 63511 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2484130859375 2 406.248486 810.48242 0.88395 0.0003591 -0.35515 -0.00014428 0.5288 0.00021483 406.24825193645137 79.477 0.553 78.988 78.682 79.235 -0.48932 52 23 3 0 0 0 0.81107 2 43438 43438;43644 0 0 1 2416000 + 54677 25201 36775 37597 63513;63514 63513 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2479858398438 2 406.248486 810.48242 NaN NaN NaN NaN NaN NaN NaN 88.164 1 87.659 87.159 88.159 -0.50423 0 0 0 0.97444 1 48221 48221 0 0 1 + 54678 25201 36775 37597 63515 63515 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2481689453125 2 406.248486 810.48242 -0.05125 -2.082E-05 -0.82474 -0.00033505 -0.87599 -0.00035587 406.24801455022464 76.095 1.2617 76.142 75.82 77.082 0.047943 146 53 5 0 0 0 0.81107 4 41958 41958;42066;42177;42391 0 0 1 655710000 + 54679 25201 36775 37597 63516;63517;63518;63519 63516 0.06959774885535808 RRAGPALA 8 Unmodified _RRAGPALA_ 0 0 0 REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 811.4896240234375 1 811.489696 810.48242 1.8659 0.0015141 -1.4685 -0.0011916 0.39741 0.0003225 811.4883390479546 104.97 0.34176 98.797 98.594 98.936 -6.1757 48 31 2 0 0 0 0.81107 2 70178 70178;70309 0 0 1 45364000 + 54680 25201 36775 37597 63520;63521 63520 0.06959774885535808 RRAGPALF 8 Unmodified _RRAGPALF_ 0 0 0 REV__nc|ENSG00000108370|O75916-4|RGS9 REV__nc|ENSG00000108370|O75916-4|RGS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2639465332031 2 444.264136 886.51372 NaN NaN NaN NaN NaN NaN NaN 103.33 1 103.28 102.78 103.78 -0.047928 0 0 0 0.97444 1 57382 57382 0 0 1 + 54681 18600 36776 37598 63522 63522 0.06592347919638541 RRAGPRLG 8 Unmodified _RRAGPRLG_ 0 0 0 REV__ENST00000493939.1_1_22:39096389-39096924:-|nuORF REV__ENST00000493939.1_1_22:39096389-39096924:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7704772949219 2 441.77266 881.530767 NaN NaN NaN NaN NaN NaN NaN 60.911 1 60.911 60.411 61.411 0 0 0 0 0.97444 1 33969 33969 0.69038 0 1 + 54682 27930 36777 37599 63523 63523 0.08526268525451997 RRAHQGNL 8 Unmodified _RRAHQGNL_ 0 0 0 ENSG00000137492|ENST00000260045|THAP12;ENST00000551685.2_1_12:43963803-43964301:-|nuORF;ENST00000520248.1_1_8:79672597-79674655:-|nuORF;ENST00000398672.3_1_X:73617291-73617450:-|nuORF ENSG00000137492|ENST00000260045|THAP12 ENSG00000137492|ENST00000260045|THAP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2655944824219 2 476.265199 950.515845 NaN NaN NaN NaN NaN NaN NaN 85.259 1 84.758 84.258 85.258 -0.5015 0 0 0 0.97444 1 46650 46650 0.79363 0 1 54683 4939 36778 37600 63524 63524 0.038607766574727975 RRAKREEKKEK 11 Unmodified _RRAKREEKKEK_ 0 0 0 ENSG00000125810|ENST00000246006|CD93 ENSG00000125810|ENST00000246006|CD93 ENSG00000125810|ENST00000246006|CD93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.9617004394531 3 486.626824 1456.85864 2.1724 0.0010571 -0.091268 -4.4414E-05 2.0811 0.0010127 486.62672646390934 100.15 0.2498 100.11 100.02 100.27 -0.036301 21 8 4 0 0 0 0.7453 1 55642 55642 0 0 1 6620700 54684 3883 36779 37601 63525 63525 0.14848794205749982 RRCLYYFYKFT 11 Unmodified _RRCLYYFYKFT_ 0 0 0 ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK ENSG00000147896|ENST00000276943|IFNK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 780.396240234375 2 780.395022 1558.77549 NaN NaN NaN NaN NaN NaN NaN 76.168 1 75.689 75.189 76.189 -0.47945 0 0 0 0.94313 1 41697 41697 0.26902 0 1 54685 5889 36780 37602 63526 63526 0.018453414335454 RRCPHRER 8 Unmodified _RRCPHRER_ 0 0 0 TP53|p.H179R|2|0.18|ENSG00000141510|chr17:7675076-7675076|T/C|missense_variant TP53|p.H179R|2|0.18|ENSG00000141510|chr17:7675076-7675076|T/C|missense_variant TP53|p.H179R|2|0.18|ENSG00000141510|chr17:7675076-7675076|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2971801757812 2 555.296508 1108.57846 NaN NaN NaN NaN NaN NaN NaN 94.008 1 94.008 93.508 94.508 0 0 0 0 0.97444 1 51968 51968 0 0 1 54686 30195 36781 37603 63527 63527 0.028515994539930034 RRDDQETF 8 Unmodified _RRDDQETF_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.803466796875 2 533.749244 1065.48394 -0.37483 -0.00020006 -1.7745 -0.00094713 -2.1493 -0.0011472 533.7478848351003 33.952 0.16889 33.952 33.822 33.991 0 9 7 2 0 0 0 8.7369 1 17869 17869 12.532 0.89125 1 1403500 + 54687 18580 36782 37604 63528 63528 -0.046186806070181774 RRDKDGLCL 9 Unmodified _RRDKDGLCL_ 0 0 0 ENST00000392627.5_1_17:72427778-72427970:+|nuORF ENST00000392627.5_1_17:72427778-72427970:+|nuORF ENST00000392627.5_1_17:72427778-72427970:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1942749023438 3 359.19408 1074.56041 NaN NaN NaN NaN NaN NaN NaN 15.545 1 15.545 15.045 16.045 0 0 0 0 0.84369 1 7496 7496 1.1933 0 1 54688 12677 36783 37605 63529 63529 0.026114196886283025 RRDQEGTED 9 Unmodified _RRDQEGTED_ 0 0 0 ENST00000263433.7_1_19:55602508-55602706:-|nuORF ENST00000263433.7_1_19:55602508-55602706:-|nuORF ENST00000263433.7_1_19:55602508-55602706:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1663208007812 3 369.167136 1104.47958 -0.63811 -0.00023557 -1.2699 -0.00046881 -1.908 -0.00070438 369.16655180892707 34.321 0.21547 34.321 34.226 34.442 0 25 10 3 0 0 0 0.56862 1 18069 18069 1.9064 0.83491 1 5180000 54689 11292 36784 37606 63530 63530 -0.06848189820539119 RRDRYDRENLS 11 Unmodified _RRDRYDRENLS_ 0 0 0 REV__ENSG00000113240|ENST00000316308|CLK4 REV__ENSG00000113240|ENST00000316308|CLK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.9188842773438 3 493.918555 1478.73384 0.13477 6.6567E-05 0.66852 0.0003302 0.8033 0.00039676 493.9187788462587 22.974 0.21892 22.986 22.9 23.119 0.012396 24 11 3 0 0 0 0.67037 1 11707 11707 7.0371 0.80273 1 9669700 + 54690 18856 36785 37607 63531 63531 0.013618769986351253 RRDRYDRENLS 11 Unmodified _RRDRYDRENLS_ 0 0 0 REV__ENSG00000113240|ENST00000316308|CLK4 REV__ENSG00000113240|ENST00000316308|CLK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.9176025390625 3 493.918555 1478.73384 0.2449 0.00012096 1.5898 0.00078524 1.8347 0.0009062 494.2535392382161 26.223 0.27705 23.272 23.112 23.39 -2.9511 35 15 3 0 0 0 0.67037 1 14371 14371 7.0371 0.80273 1 12151000 + 54691 18856 36785 37607 63532 63532 0.013618769986351253 RREAAPAL 8 Unmodified _RREAAPAL_ 0 0 0 REV__ENST00000525036.1_1_13:48877888-48878134:+|nuORF REV__ENST00000525036.1_1_13:48877888-48878134:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2587585449219 2 442.259051 882.503549 NaN NaN NaN NaN NaN NaN NaN 18.822 1 18.846 18.346 19.346 0.023106 0 0 0 0.97444 1 9464 9464 0.79363 0 1 + 54692 28342 36786 37608 63533 63533 0.0575974019440082 RREDICRTL 9 Unmodified _RREDICRTL_ 0 0 0 ENST00000588708.5_1_19:38900682-38904049:-|nuORF ENST00000588708.5_1_19:38900682-38904049:-|nuORF ENST00000588708.5_1_19:38900682-38904049:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5452575683594 3 387.876751 1160.60842 0.077754 3.0159E-05 0.24428 9.4752E-05 0.32204 0.00012491 387.8768167347351 22.361 0.37455 22.379 22.137 22.512 0.01749 52 16 5 0 0 0 0.55373 1 11413 11413 4.1895 0.86986 1 14367000 54693 15653 36787 37609 63534 63534 0.03454493608683151 RREEEERWRME 11 Unmodified _RREEEERWRME_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1944885253906 4 402.194219 1604.74777 0.2738 0.00011012 0.1178 4.7379E-05 0.3916 0.0001575 402.1942947149826 11.99 0.10752 9.508 9.4518 9.5594 -2.482 30 18 2 0 0 0 0.74429 1 6034 6034 0.094841 0.094841 1 1352300 54694 783 36788 37610 63535 63535 -0.030412135646429306 RREEELDEC 9 Unmodified _RREEELDEC_ 0 0 0 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7586669921875 2 589.758952 1177.50335 -0.17913 -0.00010564 0.35657 0.00021029 0.17744 0.00010465 589.759131461479 31.372 0.60065 31.402 31.199 31.8 0.030106 37 26 2 0 0 0 0.23158 1 16411 16411 20.454 0.039092 1 5136700 + 54695 24127 36789 37611 63536 63536 -0.07830092378389963 RREEKKLQEI 10 Unmodified _RREEKKLQEI_ 0 0 0 REV__ENSG00000163812|ENST00000424952|ZDHHC3 REV__ENSG00000163812|ENST00000424952|ZDHHC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.888427734375 2 664.885875 1327.7572 1.0151 0.00067495 1.628 0.0010824 2.6432 0.0017574 664.8864197113169 79.643 0.34381 79.154 78.989 79.333 -0.48932 40 15 4 0 0 0 0.6067 1 43566 43566 10.8 1.2555 1 8456100 + 54696 21818 36790 37612 63537 63537 0.10642922783222275 RREPRKGF 8 Unmodified _RREPRKGF_ 0 0 0 ENST00000299106.8_2_11:134019424-134019775:+|nuORF ENST00000299106.8_2_11:134019424-134019775:+|nuORF ENST00000299106.8_2_11:134019424-134019775:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.303466796875 2 523.304324 1044.5941 NaN NaN NaN NaN NaN NaN NaN 76.357 1 76.405 75.905 76.905 0.047943 0 0 0 0.97444 1 42131 42131 2.8892 0 1 54697 11540 36791 37613 63538 63538 0.0735820924271593 RREQEHML 8 Unmodified _RREQEHML_ 0 0 0 nc|ENSG00000113645|Q8IX03-2|WWC1;ENSG00000113645|ENST00000265293|WWC1;ENST00000523043.5_1_5:167798471-167835524:+|nuORF nc|ENSG00000113645|Q8IX03-2|WWC1 nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7772827148438 2 549.777282 1097.54001 0.10765 5.9183E-05 0.89993 0.00049476 1.0076 0.00055395 550.2793152147059 38.367 0.75536 38.384 38.09 38.846 0.01704 82 35 4 0 0 0 0.6895 1 20489 20489 18.135 1.0221 1 19098000 54698 2986 36792 37614 63539 63539 -0.004857509711655439 RREQKLAL 8 Unmodified _RREQKLAL_ 0 0 0 REV__nc|ENSG00000124541|Q96EU6-2|RRP36 REV__nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3138427734375 2 507.314358 1012.61416 -0.054323 -2.7559E-05 0.2793 0.00014169 0.22497 0.00011413 507.3143393367451 36.442 0.23606 36.463 36.323 36.559 0.021545 16 10 2 0 0 0 0.52622 1 19291 19291 32.305 0 1 3458100 + 54699 19453 36793 37615 63540 63540 0.10835960182646431 RREQQRRRRGQ 11 Unmodified _RREQQRRRRGQ_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 763.4356689453125 2 763.435787 1524.85702 NaN NaN NaN NaN NaN NaN NaN 97.894 1 97.651 97.151 98.151 -0.24277 0 0 0 0.9435 1 53466 53466 0 0 1 + 54700 18433 36794 37616 63541 63541 0.11558597960379302 RRERRGIRMHW 11 Unmodified _RRERRGIRMHW_ 0 0 0 REV__ENST00000438389.6_1_19:55973088-55973157:-|nuORF REV__ENST00000438389.6_1_19:55973088-55973157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.6220703125 3 518.28826 1551.84295 -0.22174 -0.00011492 1.4433 0.00074806 1.2216 0.00063314 518.2888597101937 85.95 0.33942 86.011 85.905 86.244 0.061646 46 21 3 0 0 0 0.74157 1 47589 47589 0.094841 0.011491 1 99321000 + 54701 27051 36795 37617 63542 63542 0.0891022920773139 RRERRGIRMHW 11 Unmodified _RRERRGIRMHW_ 0 0 0 REV__ENST00000438389.6_1_19:55973088-55973157:-|nuORF REV__ENST00000438389.6_1_19:55973088-55973157:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2888793945312 3 518.28826 1551.84295 -0.24024 -0.00012452 1.3486 0.00069894 1.1083 0.00057443 518.2891710780107 86.253 0.32769 86.315 86.173 86.5 0.061638 50 20 3 0 0 0 0.74157 1 47891 47891 0.094841 0.011491 1 89266000 + 54702 27051 36795 37617 63543 63543 0.0891022920773139 RRERRREEKQK 11 Unmodified _RRERRREEKQK_ 0 0 0 nc|ENSG00000165046|Q2VYF4-3|LETM2 nc|ENSG00000165046|Q2VYF4-3|LETM2 nc|ENSG00000165046|Q2VYF4-3|LETM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.953369140625 2 785.953478 1569.8924 NaN NaN NaN NaN NaN NaN NaN 109.83 1 109.78 109.28 110.28 -0.047607 0 0 0 0.9435 1 60793 60793 0 0 1 54703 16349 36796 37618 63544 63544 0.13025215697530257 RRERWKVKRWD 11 Unmodified _RRERWKVKRWD_ 0 0 0 REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF REV__ENST00000377681.7_1_20:18123344-18123419:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.95849609375 2 807.958032 1613.90151 NaN NaN NaN NaN NaN NaN NaN 93.136 1 93.159 92.659 93.659 0.022987 0 0 0 0.9435 1 51787 51787 0 0 1 + 54704 26251 36797 37619 63545 63545 0.11911609053845496 RRFAYHLRQWQ 11 Unmodified _RRFAYHLRQWQ_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 781.3009033203125 2 780.918375 1559.8222 NaN NaN NaN NaN NaN NaN NaN 95.791 1 95.795 95.295 96.295 0.004158 0 0 0 0.94307 1 53214 53214 0.30703 0.30703 1 54705 3126 36798 37620 63546 63546 0.06467962099736724 RRFGFPKQ 8 Unmodified _RRFGFPKQ_ 0 0 0 ENST00000215906.5_1_22:26825336-26829613:+|nuORF ENST00000215906.5_1_22:26825336-26829613:+|nuORF ENST00000215906.5_1_22:26825336-26829613:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 518.26220703125 2 518.295968 1034.57738 NaN NaN NaN NaN NaN NaN NaN 102.83 1 96.653 96.153 97.153 -6.1757 0 0 0 0.97444 1 68984 68984 2.5775 0.92486 1 54706 10998 36799 37621 63547 63547 0.06147708356752446 RRFKKLDL 8 Unmodified _RRFKKLDL_ 0 0 0 ENSG00000188386|ENST00000374806|PPP3R2 ENSG00000188386|ENST00000374806|PPP3R2 ENSG00000188386|ENST00000374806|PPP3R2 MSMS AL20221201_MKP_PDAC_01 4 538.3529052734375 2 538.340375 1074.6662 NaN NaN NaN NaN NaN NaN NaN 103.47 1 97.294 96.794 97.794 -6.1757 0 0 0 0.97444 1 69370 69370 0.69038 0 1 54707 9655 36800 37622 63548 63548 0.13185123596417725 RRFRCWFSML 10 Unmodified _RRFRCWFSML_ 0 0 0 REV__ENSG00000174106|ENST00000308330|LEMD3 REV__ENSG00000174106|ENST00000308330|LEMD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 701.3585205078125 2 701.355176 1400.6958 NaN NaN NaN NaN NaN NaN NaN 91.773 1 91.773 91.273 92.273 0 0 0 0 1.0024 1 50750 50750 0.40072 0.050084 1 + 54708 22767 36801 37623 63549 63549 0.011479962785870157 RRFRRLAP 8 Unmodified _RRFRRLAP_ 0 0 0 ENST00000535040.4_1_6:83074535-83074739:+|nuORF ENST00000535040.4_1_6:83074535-83074739:+|nuORF ENST00000535040.4_1_6:83074535-83074739:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8402709960938 2 536.335959 1070.65736 1.4846 0.00079624 0.30786 0.00016511 1.7924 0.00096136 536.8385048596765 109.31 0.2103 103.13 103.02 103.23 -6.1757 62 42 2 0 0 0 0.81107 1 73026 73026 0 0 1 5555100 54709 14965 36802 37624 63550 63550 0.12486194750613322 RRFRRLAP 8 Unmodified _RRFRRLAP_ 0 0 0 ENST00000535040.4_1_6:83074535-83074739:+|nuORF ENST00000535040.4_1_6:83074535-83074739:+|nuORF ENST00000535040.4_1_6:83074535-83074739:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.0177001953125 2 536.335959 1070.65736 1.4855 0.0007967 0.41911 0.00022478 1.9046 0.0010215 536.3355198153805 108.33 0.28678 102.16 101.99 102.28 -6.1757 89 59 2 0 0 0 8.7369 1 72430 72430 0 0 1 3844000 54710 14965 36802 37624 63551 63551 0.12486194750613322 RRFRRLDRRWF 11 Unmodified _RRFRRLDRRWF_ 0 0 0 REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 832.4801025390625 2 832.479466 1662.94438 NaN NaN NaN NaN NaN NaN NaN 60.132 1 54.018 53.518 54.518 -6.1147 0 0 0 0.94301 1 38675 38675 0.35063 0.35063 1 + 54711 28063 36803 37625 63552 63552 0.13942423901949041 RRFRRLDRRWF 11 Unmodified _RRFRRLDRRWF_ 0 0 0 REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 832.4786376953125 2 832.479466 1662.94438 NaN NaN NaN NaN NaN NaN NaN 63.476 1 57.301 56.801 57.801 -6.1757 0 0 0 0.94301 1 41041 41041 0.35063 0.35063 1 + 54712 28063 36803 37625 63553 63553 0.13942423901949041 RRGDFIHVM 9 Oxidation (M) _RRGDFIHVM(Oxidation (M))_ RRGDFIHVM(1) RRGDFIHVM(53) 0 0 1 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.865966796875 3 382.866075 1145.5764 0.85998 0.00032926 0.0903 3.4573E-05 0.95028 0.00036383 382.8661127790345 27.693 0.36765 24.656 24.435 24.803 -3.0365 31 18 2 0 0 0 0.033587 1 15332 15332 53.404 40.362 1 12292000 54713 8714 36804 37626 63554 63554 1473 0.009431259255279656 RRGDFIHVM 9 Oxidation (M) _RRGDFIHVM(Oxidation (M))_ 0 0 1 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 382.866075 1145.5764 0.16372 6.2683E-05 -1.2705 -0.00048642 -1.1067 -0.00042373 382.86603114494636 24.682 0.090605 24.707 24.641 24.732 0.024427 0.025321 -0.0014961 NaN 53.404 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1974200 54714 8714 36804 37626 1473 0.009431259255279656 RRGDFIHVM 9 Unmodified _RRGDFIHVM_ 0 0 0 nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2 nc|ENSG00000177885|P62993-2|GRB2 nc|ENSG00000177885|P62993-2|GRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5351867675781 3 377.534437 1129.58148 1.266 0.00047798 -0.57507 -0.00021711 0.69098 0.00026087 377.5341858445351 38.963 0.26138 34.512 34.428 34.689 -4.4509 35 16 3 0 0 0 0.36964 1 23147 23147 9.544 0 1 8509200 54715 8714 36804 37627 63555 63555 0.02187429788159534 RRGDYVHVM 9 Unmodified _RRGDYVHVM_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.193603515625 3 378.194192 1131.56075 0.41097 0.00015543 -1.3187 -0.00049873 -0.90773 -0.0003433 378.19333131310935 25.839 0.21283 22.888 22.772 22.984 -2.9511 17 14 2 0 0 0 0.31356 1 14151 14151 16.566 7.8205 1 10665000 54716 8634 36805 37628 63556 63556 0.0002283940848428756 RRGGGRAG 8 Unmodified _RRGGGRAG_ 0 0 0 ENST00000370223.7_2_10:102756916-102762283:+|nuORF ENST00000370223.7_2_10:102756916-102762283:+|nuORF ENST00000370223.7_2_10:102756916-102762283:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5458374023438 2 393.72571 785.436866 NaN NaN NaN NaN NaN NaN NaN 38.419 1 38.436 37.936 38.936 0.01704 0 0 0 0.97444 1 20429 20429 0 0 1 54717 12325 36806 37629 63557 63557 0.03556549423171873 RRGILRKADFV 11 Unmodified _RRGILRKADFV_ 0 0 0 REV__ENST00000532780.5_1_11:122930757-122933127:-|nuORF;REV__ENST00000533238.5_1_11:122929516-122932032:-|nuORF REV__ENST00000533238.5_1_11:122929516-122932032:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.9072875976562 2 665.906945 1329.79934 1.2531 0.00083444 0.016833 1.121E-05 1.2699 0.00084565 665.9067850627521 105.72 0.3789 99.549 99.416 99.795 -6.1757 88 42 3 0 0 0 0.7187 1 70878 70878 2.4985 1.0166 1 7671400 + 54718 18682;28477 36807 37630 63558 63558 0.14762942982247296 RRGKYVRGF 9 Unmodified _RRGKYVRGF_ 0 0 0 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.4925842285156 3 380.224591 1137.65194 NaN NaN NaN NaN NaN NaN NaN 92.638 1 92.638 92.138 93.138 0 0 0 0 0.84369 1 51225 51225 1.1933 0.12188 1 + 54719 29743 36808 37631 63559 63559 0.08862471168117736 RRGMKSSV 8 Unmodified _RRGMKSSV_ 0 0 0 ENST00000607780.5_1_2:96685347-96687379:+|nuORF ENST00000607780.5_1_2:96685347-96687379:+|nuORF ENST00000607780.5_1_2:96685347-96687379:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5125122070312 1 920.509445 919.502169 0.19099 0.00017581 0.96319 0.00088663 1.1542 0.0010624 920.5102070394988 93.339 0.29559 92.882 92.728 93.023 -0.4574 21 12 2 0 0 0 0.80676 1 50982 50982 2.5775 0.27475 1 421880 54720 15867 36809 37632 63560 63560 0.0391978283402068 RRGPAGAP 8 Unmodified _RRGPAGAP_ 0 0 0 REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2251586914062 2 391.225011 780.435469 0.20465 8.0063E-05 0.55301 0.00021635 0.75766 0.00029641 391.2251247155887 73.957 0.49895 74.001 73.734 74.233 0.043983 53 22 3 0 0 0 0.80975 1 40824 40824 0.79363 0 1 10236000 + 54721 25240 36810 37633 63561 63561 0.03646915334422829 RRGPAGAP 8 Unmodified _RRGPAGAP_ 0 0 0 REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 391.225011 780.435469 0.73319 0.00028684 0.048241 1.8873E-05 0.78143 0.00030572 391.2249172357629 74.458 0.61467 73.982 73.667 74.281 -0.47588 -0.009415 -0.00018096 NaN 0.79363 82 25 4 NaN NaN NaN NaN 0 NaN NaN 0 29962000 + 54722 25240 36810 37633 0.03646915334422829 RRGPAGAP 8 Unmodified _RRGPAGAP_ 0 0 0 REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 391.225011 780.435469 0.20465 8.0063E-05 0.55301 0.00021635 0.75766 0.00029641 391.2251247155887 73.957 0.49895 74.001 73.734 74.233 0.043983 0.009415 0.00021399 NaN 0.79363 53 22 3 NaN NaN NaN NaN 0 NaN NaN 0 10236000 + 54723 25240 36810 37633 0.03646915334422829 RRGPCIIY 8 Carbamidomethyl (C) _RRGPC(Carbamidomethyl (C))IIY_ RRGPC(1)IIY RRGPC(47)IIY 0 1 0 ENSG00000174444|ENST00000307961|RPL4;ENST00000566039.5_1_15:66793707-66797161:-|nuORF ENSG00000174444|ENST00000307961|RPL4 ENSG00000174444|ENST00000307961|RPL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7826538085938 2 517.781836 1033.54912 1.3657 0.00070715 0.15456 8.0027E-05 1.5203 0.00078718 517.7821664359595 34.019 0.49984 30.034 29.824 30.323 -3.9853 71 27 4 0 0 0 0.37649 2 19610 19486;19610 46.921 12.734 1 45909000 54724 8421 36811 37634 63562;63563 63563 814 0.033686423851577274 RRGQDEPHL 9 Unmodified _RRGQDEPHL_ 0 0 0 REV__nc|ENSG00000293134|O15428|PIN1P1 REV__nc|ENSG00000293134|O15428|PIN1P1 MSMS AL20221201_MKP_PDAC_01 4 369.8624267578125 3 369.859978 1106.5581 NaN NaN NaN NaN NaN NaN NaN 18.328 1 15.707 15.207 16.207 -2.6215 0 0 0 0.71962 1 9647 9647 5.7834 1.5939 1 + 54725 30040 36812 37635 63564 63564 0.009087072751754022 RRGRDKKKKKK 11 Unmodified _RRGRDKKKKKK_ 0 0 0 REV__ENSG00000167978|ENST00000301740|SRRM2 REV__ENSG00000167978|ENST00000301740|SRRM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.47314453125 2 714.473318 1426.93208 NaN NaN NaN NaN NaN NaN NaN 103.7 1 103.66 103.16 104.16 -0.047928 0 0 0 0.9435 1 57590 57590 0 0 1 + 54726 22270 36813 37636 63565 63565 0.235693874388744 RRGRKRQQN 9 Unmodified _RRGRKRQQN_ 0 0 0 ENSG00000136929|ENST00000616898|HEMGN ENSG00000136929|ENST00000616898|HEMGN ENSG00000136929|ENST00000616898|HEMGN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8516845703125 2 599.853035 1197.69152 NaN NaN NaN NaN NaN NaN NaN 26.364 1 26.391 25.891 26.891 0.026951 0 0 0 0.84737 1 13673 13673 1.8442 0.19162 1 54727 4882 36814 37637 63566 63566 0.10057991171561298 RRGRRLRLRRL 11 Unmodified _RRGRRLRLRRL_ 0 0 0 ENST00000316059.6_1_11:58346648-58346858:+|nuORF ENST00000316059.6_1_11:58346648-58346858:+|nuORF ENST00000316059.6_1_11:58346648-58346858:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 754.50244140625 2 754.503275 1506.992 NaN NaN NaN NaN NaN NaN NaN 94.76 1 94.774 94.274 95.274 0.014244 0 0 0 0.9435 1 52656 52656 0 0 1 54728 11734 36815 37638 63567 63567 0.25878122892800093 RRGTAYTPF 9 Unmodified _RRGTAYTPF_ 0 0 0 ENSG00000127870|ENST00000381588|RNF6 ENSG00000127870|ENST00000381588|RNF6 ENSG00000127870|ENST00000381588|RNF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7847290039062 2 534.78289 1067.55123 2.516 0.0013455 0.61923 0.00033116 3.1352 0.0016767 534.7831881457566 96.765 0.31284 96.758 96.645 96.958 -0.007019 21 11 2 0 0 0 0.43463 1 53765 53765 10.824 1.4765 1 2056500 54729 4030 36816 37639 63568 63568 0.02015394394584291 RRGWEPAL 8 Unmodified _RRGWEPAL_ 0 0 0 ENST00000464111.1_1_7:100283679-100283991:-|nuORF ENST00000464111.1_1_7:100283679-100283991:-|nuORF ENST00000464111.1_1_7:100283679-100283991:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.7715454101562 2 492.772326 983.530098 NaN NaN NaN NaN NaN NaN NaN 54.246 1 48.38 47.88 48.88 -5.8653 0 0 0 0.88073 1 34382 34382 19.439 2.4967 1 54730 13708 36817 37640 63569 63569 0.03767429085758067 RRHFLQRLYKR 11 Unmodified _RRHFLQRLYKR_ 0 0 0 REV__ENSG00000163823|ENST00000296140|CCR1 REV__ENSG00000163823|ENST00000296140|CCR1 MSMS AL20221201_MKP_PDAC_01 4 786.9675903320312 2 786.970942 1571.92733 NaN NaN NaN NaN NaN NaN NaN 65.821 1 59.645 59.145 60.145 -6.1757 0 0 0 0.93933 1 42759 42759 2.9952 1.6657 1 + 54731 21821 36818 37641 63570 63570 0.16424503296161674 RRHGKFEAYYH 11 Unmodified _RRHGKFEAYYH_ 0 0 0 ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF ENST00000573267.1_3_16:74729599-74734630:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.9169311523438 3 488.581215 1462.72182 NaN NaN NaN NaN NaN NaN NaN 22.63 1 22.653 22.153 23.153 0.022896 0 0 0 0.94307 1 11517 11517 0.08335 0 1 54732 15497 36819 37642 63571 63571 0.008963050461034072 RRHGPCCA 8 Unmodified _RRHGPCCA_ 0 0 0 ENST00000488881.1_1_2:220246688-220246790:-|nuORF;ENST00000273075.8_2_2:220246294-220246790:-|nuORF ENST00000488881.1_1_2:220246688-220246790:-|nuORF ENST00000488881.1_1_2:220246688-220246790:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2082214355469 2 450.207981 898.401409 NaN NaN NaN NaN NaN NaN NaN 16.969 1 16.97 16.47 17.47 0.0010548 0 0 0 0.97444 1 8402 8402 0.69038 0 1 54733 11377 36820 37643 63572 63572 -0.051855724204983744 RRHHHSHGC 9 Unmodified _RRHHHSHGC_ 0 0 0 REV__ENST00000490740.6_1_10:111651541-111652810:-|nuORF REV__ENST00000490740.6_1_10:111651541-111652810:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.762939453125 2 563.762832 1125.51111 NaN NaN NaN NaN NaN NaN NaN 15.596 1 15.602 15.102 16.102 0.0057774 0 0 0 0.8622 1 7779 7779 0 0 1 + 54734 27882 36821 37644 63573 63573 -0.04662430756934555 RRHIKRWEYFI 11 Unmodified _RRHIKRWEYFI_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.452392578125 2 802.452051 1602.88955 NaN NaN NaN NaN NaN NaN NaN 54.87 1 54.87 54.37 55.37 0 0 0 0 0.9435 1 30471 30471 0 0 1 + 54735 188 36822 37645 63574 63574 0.11221992310674977 RRHLVRLPT 9 Unmodified _RRHLVRLPT_ 0 0 0 REV__ENSG00000162927|ENST00000316752|PUS10 REV__ENSG00000162927|ENST00000316752|PUS10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.2439270019531 3 383.243874 1146.70979 NaN NaN NaN NaN NaN NaN NaN 94.501 1 94.501 94.001 95.001 0 0 0 0 0.85798 1 52239 52239 0.23584 0.095952 1 + 54736 21706 36823 37646 63575 63575 0.14230733093540948 RRHPLPLL 8 Unmodified _RRHPLPLL_ 0 0 0 ENST00000457861.1_1_7:935191-935371:+|nuORF ENST00000457861.1_1_7:935191-935371:+|nuORF ENST00000457861.1_1_7:935191-935371:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.325927734375 2 501.321986 1000.62942 NaN NaN NaN NaN NaN NaN NaN 104.24 1 98.069 97.569 98.569 -6.1757 0 0 0 0.97444 1 69826 69826 0.79363 0 1 54737 13619 36824 37647 63576 63576 0.12912871770504353 RRHRAHRH 8 Unmodified _RRHRAHRH_ 0 0 0 nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B nc|ENSG00000148408|Q00975-2|CACNA1B MSMS AL20221201_MKP_PDAC_01 4 562.9027709960938 2 563.321706 1124.62886 NaN NaN NaN NaN NaN NaN NaN 106.22 1 100.04 99.544 100.54 -6.1757 0 0 0 0.97444 1 71112 71112 0.79363 0 1 54738 5931 36825 37648 63577 63577 0.07152889894018699 RRHRDCRVY 9 Unmodified _RRHRDCRVY_ 0 0 0 nc|ENSG00000127838|Q8N490-3|PNKD;nc|ENSG00000127838|Q8N490-4|PNKD;ENSG00000127838|ENST00000273077|PNKD nc|ENSG00000127838|Q8N490-3|PNKD nc|ENSG00000127838|Q8N490-3|PNKD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.8878479003906 3 420.887873 1259.64179 -0.068751 -2.8936E-05 0.21824 9.1855E-05 0.14949 6.2918E-05 420.8879717450593 32.2 0.25851 32.07 31.917 32.176 -0.12915 32 9 4 0 0 0 0.43463 1 16728 16728 7.1017 1.2336 1 12159000 54739 16178 36826 37649 63578 63578 0.0223554017125025 RRHREWRVSTR 11 Unmodified _RRHREWRVSTR_ 0 0 0 REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF REV__ENST00000419690.5_1_X:24167846-24170939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.956787109375 3 513.622296 1537.84506 0.019581 1.0057E-05 0.53529 0.00027494 0.55488 0.000285 513.6225569223435 31.375 0.25032 31.405 31.272 31.522 0.030104 41 10 5 0 0 0 0.7414 1 16409 16409 0.36667 0.27183 1 43054000 + 54740 26821 36827 37650 63579 63579 0.0976498121719942 RRHSFRKHLYL 11 Unmodified _RRHSFRKHLYL_ 0 0 0 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1;ENSG00000139597|ENST00000380130|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 nc|ENSG00000139597|Q5TBK1-2|N4BP2L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.9371337890625 2 756.936568 1511.85858 NaN NaN NaN NaN NaN NaN NaN 90.955 1 90.955 90.455 91.455 0 0 0 0 0.9435 1 50308 50308 0 0 1 54741 16229 36828 37651 63580 63580 0.1231283899646769 RRHYEEQMR 9 Unmodified _RRHYEEQMR_ 0 0 0 nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.5481567382812 3 435.547405 1303.62039 0.26567 0.00011571 1.1018 0.00047988 1.3675 0.00059559 435.5479996666402 18.195 0.99931 18.201 17.935 18.935 0.0060482 221 64 7 0 0 0 0.6149 1 9595 9595 0.20686 0 1 1164400000 54742 6319 36829 37652 63581 63581 -0.019278896481409902 RRILQQLGL 9 Unmodified _RRILQQLGL_ 0 0 0 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 ENSG00000156510|ENST00000354624|HKDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2374267578125 3 366.236497 1095.68766 -0.01529 -5.5999E-06 0.6468 0.00023688 0.63151 0.00023128 366.2367150022993 14.977 0.11923 14.983 14.924 15.043 0.0057774 7 4 2 0 0 0 0.32235 1 7459 7459 16.149 0 1 1403300 54743 6463 36830 37653 63582 63582 0.14364508625135386 RRIPVSLLY 9 Unmodified _RRIPVSLLY_ 0 0 0 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 ENSG00000181656|ENST00000315033|GPR88 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.9017639160156 3 372.901114 1115.68151 1.6446 0.00061325 -0.93432 -0.00034841 0.71023 0.00026485 373.23445012698306 19.778 0.51407 17.121 16.873 17.387 -2.6564 70 33 3 0 0 0 0.57331 1 10566 10566 2.9952 0 1 6702900 54744 8986 36831 37654 63583 63583 0.1282999039360675 RRIRVRERKP 10 Unmodified _RRIRVRERKP_ 0 0 0 REV__ENST00000582471.1_1_17:8285624-8286501:-|nuORF REV__ENST00000582471.1_1_17:8285624-8286501:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 455.9609985351562 3 455.960249 1364.85892 NaN NaN NaN NaN NaN NaN NaN 14.258 1 11.755 11.255 12.255 -2.5029 0 0 0 1.0048 1 7230 7230 0.13989 0.056541 1 + 54745 29073 36832 37655 63584 63584 0.19108258716278215 RRIYFRMRREK 11 Unmodified _RRIYFRMRREK_ 0 0 0 REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.961669921875 2 805.96226 1609.90997 NaN NaN NaN NaN NaN NaN NaN 82.289 1 82.351 81.851 82.851 0.062004 0 0 0 0.9435 1 45520 45520 0 0 1 + 54746 16752 36833 37656 63585 63585 0.12940839698831041 RRKAKAAC 8 Unmodified _RRKAKAAC_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 903.5311279296875 1 903.530515 902.523239 -0.33775 -0.00030517 -0.27308 -0.00024673 -0.61082 -0.0005519 903.530172299633 104.59 0.043922 104.54 104.51 104.55 -0.048737 6 3 2 0 0 0 0.81107 1 58078 58078 0 0 1 3255800 + 54747 18669 36834 37657 63586 63586 0.0680779293352316 RRKAKAAC 8 Unmodified _RRKAKAAC_ 0 0 0 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 903.530515 902.523239 -0.33775 -0.00030517 -0.27308 -0.00024673 -0.61082 -0.0005519 903.530172299633 104.59 0.043922 104.54 104.51 104.55 -0.048737 0 0 NaN 0 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3255800 + 54748 18669 36834 37657 0.0680779293352316 RRKDGVFLY 9 Unmodified _RRKDGVFLY_ 0 0 0 ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF ENSG00000125691|ENST00000479035|RPL23 ENSG00000125691|ENST00000479035|RPL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2203674316406 3 385.220735 1152.64038 -0.12448 -4.7951E-05 -0.62436 -0.00024052 -0.74884 -0.00028847 385.2205298426215 32.798 0.27015 32.828 32.643 32.914 0.029743 24 11 3 0 0 0 0.37578 1 17199 17199 13.615 1.3742 1 6064500 54749 3871 36835 37658 63587 63587 0.07016229354144343 RRKEKRKED 9 Unmodified _RRKEKRKED_ 0 0 0 REV__ENSG00000248333|ENST00000341832|CDK11B REV__ENSG00000248333|ENST00000341832|CDK11B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2437744140625 3 415.577582 1243.71092 -0.032609 -1.3552E-05 -0.28568 -0.00011872 -0.31829 -0.00013227 415.5774071553281 38.439 0.25683 38.456 38.265 38.522 0.01704 15 11 2 0 0 0 0.2188 1 20345 20345 1.0715 0 1 1757400 + 54750 24487 36836 37659 63588 63588 0.09880902671784497 RRKKHQQC 8 Unmodified _RRKKHQQC_ 0 0 0 REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.87158203125 3 361.869931 1082.58796 NaN NaN NaN NaN NaN NaN NaN 0.23985 1 -2.2421 -2.7421 -1.7421 -2.482 0 0 0 0.97444 1 131 131 0.40072 0 1 + 54751 28971 36837 37660 63589 63589 0.04997367739542824 RRKKHQQC 8 Unmodified _RRKKHQQC_ 0 0 0 REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8709716796875 3 361.869931 1082.58796 NaN NaN NaN NaN NaN NaN NaN 0.69737 1 -1.7846 -2.2846 -1.2846 -2.482 0 0 0 0.97444 1 368 368 0.40072 0 1 + 54752 28971 36837 37660 63590 63590 0.04997367739542824 RRKKHQQC 8 Unmodified _RRKKHQQC_ 0 0 0 REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8699035644531 3 361.869931 1082.58796 NaN NaN NaN NaN NaN NaN NaN 1.1976 1 -1.2844 -1.7844 -0.78436 -2.482 0 0 0 0.97444 1 621 621 0.40072 0 1 + 54753 28971 36837 37660 63591 63591 0.04997367739542824 RRKKHQQC 8 Unmodified _RRKKHQQC_ 0 0 0 REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF REV__ENST00000570439.1_1_17:7251916-7252060:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.8707580566406 3 361.869931 1082.58796 NaN NaN NaN NaN NaN NaN NaN 1.5184 1 -0.96358 -1.4636 -0.46358 -2.482 0 0 0 0.97444 1 786 786 0.40072 0 1 + 54754 28971 36837 37660 63592 63592 0.04997367739542824 RRKKKKKK 8 Unmodified _RRKKKKKK_ 0 0 0 nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000341049.6_1_7:116199659-116199932:+|nuORF nc|ENSG00000114923|P48751-2|SLC4A3;REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF nc|ENSG00000114923|P48751-2|SLC4A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2683715820312 3 367.268131 1098.78256 NaN NaN NaN NaN NaN NaN NaN 11.782 1 11.794 11.294 12.294 0.012355 0 0 0 0.97444 1 5815 5815 0 0 1 54755 3073;27066 36838 37661 63593 63593 0.23712486886961415 RRKKRSQGWLF 11 Unmodified _RRKKRSQGWLF_ 0 0 0 ENST00000594295.5_1_19:52580327-52588101:-|nuORF ENST00000594295.5_1_19:52580327-52588101:-|nuORF ENST00000594295.5_1_19:52580327-52588101:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 731.4312744140625 2 731.431119 1460.84768 NaN NaN NaN NaN NaN NaN NaN 17.704 1 17.709 17.209 18.209 0.0050564 0 0 0 0.9435 1 8942 8942 0 0 1 54756 15747 36839 37662 63594 63594 0.1356943662217418 RRKKSKKKHK 10 Unmodified _RRKKSKKKHK_ 0 0 0 REV__nc|ENSG00000196504|O75400-2|PRPF40A REV__nc|ENSG00000196504|O75400-2|PRPF40A MSMS AL20221201_MKP_PDAC_01 4 662.4470825195312 2 662.444029 1322.87351 NaN NaN NaN NaN NaN NaN NaN 105.55 1 99.372 98.872 99.872 -6.1757 0 0 0 1.0024 1 70717 70717 0.40072 0.093686 1 + 54757 23836 36840 37663 63595 63595 0.22498330864436866 RRKLHLFLLGL 11 Unmodified _RRKLHLFLLGL_ 0 0 0 REV__ENST00000337673.6_1_7:99097681-99097792:-|nuORF REV__ENST00000337673.6_1_7:99097681-99097792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.9664611816406 3 455.96623 1364.87686 NaN NaN NaN NaN NaN NaN NaN 15.188 1 15.188 14.688 15.688 0 0 0 0 0.9435 1 7295 7295 0 0 1 + 54758 25666 36841 37664 63596 63596 0.2090158091846206 RRKLLHAPRLH 11 Unmodified _RRKLLHAPRLH_ 0 0 0 REV__ENST00000228264.10_1_12:31257084-31257465:+|nuORF REV__ENST00000228264.10_1_12:31257084-31257465:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.4436645507812 2 698.941654 1395.86875 1.1569 0.00080861 0.96795 0.00067654 2.1249 0.0014852 698.9424706234008 105.56 0.24382 99.386 99.324 99.568 -6.1757 28 18 2 0 0 0 0.7326 1 70722 70722 1.1933 0.84271 1 4562900 + 54759 24798 36842 37665 63597 63597 0.18665446721706758 RRKLQGKL 8 Unmodified _RRKLQGKL_ 0 0 0 ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS ENSG00000178921|ENST00000314666|PFAS MSMS AL20221201_MKP_PDAC_01 4 499.8365173339844 2 499.832717 997.650882 NaN NaN NaN NaN NaN NaN NaN 106.1 1 99.926 99.426 100.43 -6.1757 0 0 0 0.97444 1 71042 71042 0.69038 0 1 54760 8783 36843 37666 63598 63598 0.15196256799242747 RRKLRELKLRH 11 Unmodified _RRKLRELKLRH_ 0 0 0 ENST00000529984.5_1_1:45805925-45806045:-|nuORF ENST00000529984.5_1_1:45805925-45806045:-|nuORF ENST00000529984.5_1_1:45805925-45806045:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 752.9888916015625 2 752.986592 1503.95863 NaN NaN NaN NaN NaN NaN NaN 91.387 1 91.424 90.924 91.924 0.036499 0 0 0 0.9435 1 50833 50833 0 0 1 54761 14883 36844 37667 63599 63599 0.2268107633026375 RRKLRRRPRRG 11 Unmodified _RRKLRRRPRRG_ 0 0 0 REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 754.3270874023438 2 753.993075 1505.9716 NaN NaN NaN NaN NaN NaN NaN 17.83 1 15.244 14.744 15.744 -2.5866 0 0 0 0.9435 1 9355 9355 0 0 1 + 54762 24882 36845 37668 63600 63600 0.23884952232992873 RRKLRRRPRRG 11 Unmodified _RRKLRRRPRRG_ 0 0 0 REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 753.991943359375 2 753.993075 1505.9716 NaN NaN NaN NaN NaN NaN NaN 17.895 1 15.308 14.808 15.808 -2.5866 0 0 0 0.9435 1 9394 9394 0 0 1 + 54763 24882 36845 37668 63601 63601 0.23884952232992873 RRKLYIHR 8 Unmodified _RRKLYIHR_ 0 0 0 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.35595703125 2 571.356891 1140.69923 -0.61852 -0.00035339 -1.0556 -0.00060312 -1.6741 -0.00095651 571.35621767299 103.53 0.069153 103.48 103.45 103.52 -0.047928 4 2 2 0 0 0 0.8104 1 57510 57510 0.69038 0 1 23549000 54764 9190 36846 37669 63602 63602 0.13450750439119474 RRKMEMRRRRK 11 Unmodified _RRKMEMRRRRK_ 0 0 0 nc|ENSG00000164334|A1A519-4|FAM170A nc|ENSG00000164334|A1A519-4|FAM170A nc|ENSG00000164334|A1A519-4|FAM170A MSMS AL20221201_MKP_PDAC_01 4 801.9739990234375 2 801.972636 1601.93072 NaN NaN NaN NaN NaN NaN NaN 37.631 1 33.262 32.762 33.762 -4.3689 0 0 0 0.9435 1 22108 22108 0 0 1 54765 16340 36847 37670 63603 63603 0.15383106806825708 RRKNPKKAKK 10 Unmodified _RRKNPKKAKK_ 0 0 0 nc|ENSG00000124196|Q9H1H1-2|GTSF1L;ENSG00000124196|ENST00000373003|GTSF1L nc|ENSG00000124196|Q9H1H1-2|GTSF1L nc|ENSG00000124196|Q9H1H1-2|GTSF1L MSMS AL20221201_MKP_PDAC_01 4 627.4173583984375 2 627.41748 1252.82041 NaN NaN NaN NaN NaN NaN NaN 104.3 1 98.124 97.624 98.624 -6.1757 0 0 0 1.0024 1 69860 69860 0.40072 0 1 54766 3758 36848 37671 63604 63604 0.20410953081773187 RRKPKILPR 9 Unmodified _RRKPKILPR_ 0 0 0 REV__nc|ENSG00000179348|P23769-2|GATA2 REV__nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3953247070312 2 582.396016 1162.77748 1.551 0.0009033 -2.2793 -0.0013274 -0.72825 -0.00042413 582.3945975906679 103.59 0.082855 97.411 97.378 97.461 -6.1757 12 9 2 0 0 0 0.62242 1 69448 69448 0 0 1 10089000 + 54767 23093 36849 37672 63605 63605 0.20260183024356593 RRKPRLAASL 10 Unmodified _RRKPRLAASL_ 0 0 0 ENSG00000140955|ENST00000315906|ADAD2;nc|ENSG00000140955|Q8NCV1-2|ADAD2 ENSG00000140955|ENST00000315906|ADAD2 ENSG00000140955|ENST00000315906|ADAD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.8741455078125 2 584.375281 1166.73601 1.5282 0.00089302 -1.2736 -0.00074425 0.25457 0.00014877 584.374680171997 103.77 0.054001 97.599 97.563 97.617 -6.1757 10 6 2 0 0 0 0.23227 1 69545 69545 10.824 10.824 1 9686600 54768 5287 36850 37673 63606 63606 0.15931002265028837 RRKQKKRRRRM 11 Unmodified _RRKQKKRRRRM_ 0 0 0 REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.0112915039062 2 800.007867 1598.00118 NaN NaN NaN NaN NaN NaN NaN 82.547 1 82.609 82.109 83.109 0.062004 0 0 0 0.9435 1 45668 45668 0 0 1 + 54769 25545 36851 37674 63607 63607 0.22610148186822698 RRKQVFKVI 9 Unmodified _RRKQVFKVI_ 0 0 0 ENST00000462186.2_1_19:23991626-23991716:+|nuORF ENST00000462186.2_1_19:23991626-23991716:+|nuORF ENST00000462186.2_1_19:23991626-23991716:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3819580078125 2 587.382574 1172.7506 1.4929 0.00087688 -2.1951 -0.0012893 -0.7022 -0.00041246 587.3807504490909 103.62 0.1366 97.442 97.358 97.495 -6.1757 36 24 2 0 0 0 0.61381 1 69476 69476 0.52476 0.066424 1 7875000 54770 13673 36852 37675 63608 63608 0.17113074413191498 RRKQWQEVEKE 11 Unmodified _RRKQWQEVEKE_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.9404602050781 3 505.939068 1514.79537 0.68155 0.00034482 2.0848 0.0010548 2.7664 0.0013996 505.939847087012 57.784 0.20104 57.784 57.716 57.917 0 11 8 2 0 0 0 0.73506 1 32187 32187 0.32927 0 1 1199300 54771 1195 36853 37676 63609 63609 0.05856808697876659 RRKQWQEVEKE 11 Unmodified _RRKQWQEVEKE_ 0 0 0 ENSG00000076826|ENST00000160298|CAMSAP3;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENST00000595692.1_1_19:7679981-7682940:+|nuORF ENSG00000076826|ENST00000160298|CAMSAP3 ENSG00000076826|ENST00000160298|CAMSAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.9400634765625 3 505.939068 1514.79537 0.9299 0.00047047 1.2641 0.00063954 2.194 0.00111 505.9396407504646 57.975 0.31659 57.909 57.755 58.072 -0.066036 44 15 4 0 0 0 0.69316 1 31531 31531 2.2527 1.0379 1 14274000 54772 1195 36853 37676 63610 63610 0.05856808697876659 RRKRKKKKK 9 Unmodified _RRKRKKKKK_ 0 0 0 REV__ENSG00000116273|ENST00000377648|PHF13 REV__ENSG00000116273|ENST00000377648|PHF13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.78515625 2 628.449114 1254.88368 NaN NaN NaN NaN NaN NaN NaN 15.616 1 15.621 15.121 16.121 0.0057774 0 0 0 0.8622 1 7790 7790 0 0 1 + 54773 19036 36854 37677 63611 63611 0.26642938589679943 RRKRKKQPRIR 11 Unmodified _RRKRKKQPRIR_ 0 0 0 REV__ENSG00000159714|ENST00000565726|ZDHHC1 REV__ENSG00000159714|ENST00000565726|ZDHHC1 MSMS AL20221201_MKP_PDAC_01 4 508.0082702636719 3 508.006081 1520.99641 NaN NaN NaN NaN NaN NaN NaN 104.8 1 98.629 98.129 99.129 -6.1757 0 0 0 0.9435 1 70159 70159 0 0 1 + 54774 21496 36855 37678 63612 63612 0.2567558731570898 RRKRQLQQQRR 11 Unmodified _RRKRQLQQQRR_ 0 0 0 REV__nc|ENSG00000130956|Q5JVS0-2|HABP4 REV__nc|ENSG00000130956|Q5JVS0-2|HABP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3172607421875 3 518.317095 1551.92946 NaN NaN NaN NaN NaN NaN NaN 89.198 1 88.694 88.194 89.194 -0.50423 0 0 0 0.94337 1 48772 48772 0.094841 0.094841 1 + 54775 19757 36856 37679 63613 63613 0.17556932033949124 RRKRRERKQRR 11 Unmodified _RRKRRERKQRR_ 0 0 0 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 ENSG00000130764|ENST00000378251|LRRC47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 813.0121459960938 2 813.011996 1624.00944 NaN NaN NaN NaN NaN NaN NaN 100.62 1 100.49 99.986 100.99 -0.13293 0 0 0 0.9435 1 54920 54920 0 0 1 54776 4255 36857 37680 63614 63614 0.22239418427807323 RRKRRLKGLW 10 Unmodified _RRKRRLKGLW_ 0 0 0 REV__ENSG00000224109|ENST00000417339|CENPVL3 REV__ENSG00000224109|ENST00000417339|CENPVL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.4470825195312 2 684.944196 1367.87384 1.7988 0.0012321 -0.85621 -0.00058646 0.94263 0.00064565 684.9434287574592 105.01 0.17049 98.834 98.736 98.906 -6.1757 53 14 5 0 0 0 0.72247 1 70262 70262 0.40072 0.093686 1 821980000 + 54777 24378 36858 37681 63615 63615 0.2046175058433164 RRKRRLKGLW 10 Unmodified _RRKRRLKGLW_ 0 0 0 REV__ENSG00000224109|ENST00000417339|CENPVL3 REV__ENSG00000224109|ENST00000417339|CENPVL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.9656066894531 3 456.965223 1367.87384 1.6341 0.00074674 -0.49994 -0.00022846 1.1342 0.00051828 456.9648105018262 105.02 0.13985 98.848 98.76 98.9 -6.1757 28 11 3 0 0 0 0.72247 1 70291 70291 0.13989 0.056541 1 109710000 + 54778 24378 36858 37681 63616 63616 0.2046175058433164 RRKRRMKVKKK 11 Unmodified _RRKRRMKVKKK_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 757.5132446289062 2 757.506638 1512.99872 NaN NaN NaN NaN NaN NaN NaN 104.12 1 104.08 103.58 104.58 -0.048737 0 0 0 0.9435 1 57814 57814 0 0 1 + 54779 17830 36859 37682 63617 63617 0.26274299729152517 RRKRRRMKKKK 11 Unmodified _RRKRRRMKKKK_ 0 0 0 ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF ENST00000235372.11_1_1:14105080-14105206:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 524.3546142578125 3 524.351083 1570.03142 NaN NaN NaN NaN NaN NaN NaN 103.06 1 96.883 96.383 97.383 -6.1757 0 0 0 0.9435 1 69123 69123 0 0 1 54780 11085 36860 37683 63618 63618 0.2692050685200229 RRKRRRMLRER 11 Unmodified _RRKRRRMLRER_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.9983520507812 2 806.9975 1611.98045 NaN NaN NaN NaN NaN NaN NaN 78.265 1 78.317 77.817 78.817 0.052452 0 0 0 0.9435 1 43215 43215 0 0 1 54781 4304 36861 37684 63619 63619 0.19893557807176876 RRKRRRRKRTK 11 Unmodified _RRKRRRRKRTK_ 0 0 0 REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF REV__ENST00000361675.6_2_7:134618055-134618145:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 799.033203125 2 799.032731 1596.05091 NaN NaN NaN NaN NaN NaN NaN 99.443 1 93.267 92.767 93.767 -6.1757 0 0 0 0.9435 1 66228 66228 0 0 1 + 54782 25932 36862 37685 63620 63620 0.27672599187121705 RRKSLPKRS 9 Unmodified _RRKSLPKRS_ 0 0 0 REV__ENSG00000103313|ENST00000219596|MEFV REV__ENSG00000103313|ENST00000219596|MEFV MSMS AL20221201_MKP_PDAC_01 4 564.3611450195312 2 564.359631 1126.70471 NaN NaN NaN NaN NaN NaN NaN 104.06 1 97.884 97.384 98.384 -6.1757 0 0 0 0.84737 1 69715 69715 1.8442 0.19162 1 + 54783 18299 36863 37686 63621 63621 0.14642429230957532 RRKVVILG 8 Unmodified _RRKVVILG_ 0 0 0 ENSG00000214491|ENST00000402034|SEC14L6 ENSG00000214491|ENST00000402034|SEC14L6 ENSG00000214491|ENST00000402034|SEC14L6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 940.643310546875 1 940.641446 939.634169 1.1904 0.0011197 1.0158 0.00095547 2.2062 0.0020752 940.6420181756941 103.81 0.12299 97.631 97.571 97.694 -6.1757 38 27 2 0 0 0 0.81107 1 69549 69549 0 0 1 5106600 54784 10495 36864 37687 63622 63622 0.16193755913286623 RRKYERKREER 11 Unmodified _RRKYERKREER_ 0 0 0 ENSG00000100380|ENST00000216218|ST13 ENSG00000100380|ENST00000216218|ST13 ENSG00000100380|ENST00000216218|ST13 MSMS AL20221201_MKP_PDAC_01 4 803.4560546875 2 803.455853 1604.89715 NaN NaN NaN NaN NaN NaN NaN 105.47 1 99.29 98.79 99.79 -6.1757 0 0 0 0.94307 1 70667 70667 0.30703 0.03801 1 54785 1811 36865 37688 63623 63623 0.11890099840320545 RRKYWFLNRRL 11 Unmodified _RRKYWFLNRRL_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.4758911132812 2 804.473318 1606.93208 NaN NaN NaN NaN NaN NaN NaN 103.59 1 103.54 103.04 104.04 -0.047928 0 0 0 0.9435 1 57527 57527 0 0 1 54786 8125 36866 37689 63624 63624 0.15289387438929225 RRKYWFLNRRL 11 Unmodified _RRKYWFLNRRL_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.4745483398438 2 804.473318 1606.93208 NaN NaN NaN NaN NaN NaN NaN 103.95 1 103.9 103.4 104.4 -0.048737 0 0 0 0.9435 1 57723 57723 0 0 1 54787 8125 36866 37689 63625 63625 0.15289387438929225 RRLAGPSV 8 Unmodified _RRLAGPSV_ 0 0 0 REV__ENSG00000037637|ENST00000375592|FBXO42 REV__ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.5169067382812 1 855.515911 854.508634 0.55498 0.00047479 0.0067828 5.8028E-06 0.56176 0.00048059 855.515708525572 79.16 0.42973 79.215 79.015 79.445 0.054977 36 16 3 0 0 0 0.80676 1 43661 43661 2.5775 0 1 13267000 + 54788 17173 36867 37690 63626 63626 0.07556044057048439 RRLERVRRRR 10 Unmodified _RRLERVRRRR_ 0 0 0 ENSG00000090470|ENST00000204549|PDCD7 ENSG00000090470|ENST00000204549|PDCD7 ENSG00000090470|ENST00000204549|PDCD7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.9023132324219 4 363.98563 1451.91341 2.0941 0.00076221 -0.87674 -0.00031912 1.2173 0.00044309 364.2352981054866 33.803 0.21534 29.818 29.714 29.929 -3.9853 15 11 2 0 0 0 0.24012 1 19437 19437 0.12286 0.12286 1 4553500 54789 1558 36868 37691 63627 63627 0.20553270587720363 RRLFFFLFF 9 Unmodified _RRLFFFLFF_ 0 0 0 REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.867919921875 2 646.868769 1291.72298 NaN NaN NaN NaN NaN NaN NaN 70.681 1 70.204 69.704 70.704 -0.47735 0 0 0 0.85737 1 38672 38672 0.6015 0 1 + 54790 28341 36869 37692 63628 63628 0.0887917115289838 RRLFPLPNL 9 Unmodified _RRLFPLPNL_ 0 0 0 REV__ENSG00000179270|ENST00000331664|PCARE REV__ENSG00000179270|ENST00000331664|PCARE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3483276367188 2 563.3482 1124.68185 0.69132 0.00038946 -0.064909 -3.6566E-05 0.62641 0.00035289 563.3482272410456 48.687 0.29571 48.643 48.476 48.772 -0.04369 41 14 4 0 0 0 0.49766 1 26344 26344 11.64 0 1 11691000 + 54791 23089 36870 37693 63629 63629 0.12449410113435988 RRLFRERYRLH 11 Unmodified _RRLFRERYRLH_ 0 0 0 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 801.46630859375 2 801.466024 1600.9175 NaN NaN NaN NaN NaN NaN NaN 93.012 1 93.035 92.535 93.535 0.022987 0 0 0 0.9435 1 51720 51720 0 0 1 54792 9241 36871 37694 63630 63630 0.14107315290789302 RRLGEHTEAL 10 Unmodified _RRLGEHTEAL_ 0 0 0 nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-2|CDKL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5513916015625 3 394.551033 1180.63127 1.0543 0.00041596 -0.30617 -0.0001208 0.74808 0.00029516 394.5509242850227 18.907 0.40953 16.286 16.097 16.506 -2.6215 92 26 5 0 0 0 0.46514 1 9993 9993 11.518 2.2741 1 77732000 54793 16085 36872 37695 63631 63631 0.04817835997801012 RRLGKVIPV 9 Unmodified _RRLGKVIPV_ 0 0 0 ENSG00000116497|ENST00000373475|S100PBP;nc|ENSG00000116497|Q96BU1-2|S100PBP;ENST00000531123.5_1_1:33290993-33299636:+|nuORF;ENST00000356689.7_1_1:33290993-33299636:+|nuORF ENSG00000116497|ENST00000373475|S100PBP ENSG00000116497|ENST00000373475|S100PBP MSMS AL20221201_MKP_PDAC_01 4 519.3525390625 2 519.350743 1036.68693 NaN NaN NaN NaN NaN NaN NaN 105.48 1 99.301 98.801 99.801 -6.1757 0 0 0 0.85737 1 70675 70675 0.6015 0 1 54794 3223 36873 37696 63632 63632 0.17005713976072911 RRLHRRRRGRD 11 Unmodified _RRLHRRRRGRD_ 0 0 0 ENST00000379162.8_1_X:24483408-24483594:+|nuORF ENST00000379162.8_1_X:24483408-24483594:+|nuORF ENST00000379162.8_1_X:24483408-24483594:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 767.6138305664062 2 767.462139 1532.90972 NaN NaN NaN NaN NaN NaN NaN 92.551 1 92.581 92.081 93.081 0.030197 0 0 0 0.9435 1 51465 51465 0 0 1 54795 12561 36874 37697 63633 63633 0.16458600813825797 RRLIRRLNRTS 11 Unmodified _RRLIRRLNRTS_ 0 0 0 REV__ENST00000488174.5_1_X:70793824-70793887:+|nuORF REV__ENST00000488174.5_1_X:70793824-70793887:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 720.955322265625 2 720.95275 1439.89095 NaN NaN NaN NaN NaN NaN NaN 105.6 1 99.421 98.921 99.921 -6.1757 0 0 0 0.94313 1 70745 70745 0.26902 0 1 + 54796 27838 36875 37698 63634 63634 0.18859626399444096 RRLKHKRK 8 Unmodified _RRLKHKRK_ 0 0 0 ENST00000451383.1_1_2:67108241-67108316:-|nuORF ENST00000451383.1_1_2:67108241-67108316:-|nuORF ENST00000451383.1_1_2:67108241-67108316:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3803100585938 2 561.378158 1120.74176 1.778 0.00099812 0.75049 0.00042131 2.5285 0.0014194 561.3788366519572 105.14 0.12518 98.967 98.9 99.025 -6.1757 59 25 3 0 0 0 0.81107 1 70395 70395 0 0 1 164020000 54797 13519 36876 37699 63635 63635 0.1862214556736035 RRLKKPKVLPL 11 Unmodified _RRLKKPKVLPL_ 0 0 0 ENST00000367265.7_1_1:202777435-202777672:-|nuORF ENST00000367265.7_1_1:202777435-202777672:-|nuORF ENST00000367265.7_1_1:202777435-202777672:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.9825439453125 3 449.98188 1346.92381 NaN NaN NaN NaN NaN NaN NaN 23.233 1 23.251 22.751 23.751 0.01749 0 0 0 0.9435 1 11960 11960 0 0 1 54798 12230 36877 37700 63636 63636 0.26422440469605135 RRLKRKRRKMR 11 Unmodified _RRLKRKRRKMR_ 0 0 0 ENSG00000229117|ENST00000546591|RPL41 ENSG00000229117|ENST00000546591|RPL41 ENSG00000229117|ENST00000546591|RPL41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 792.518310546875 2 792.520611 1583.02667 NaN NaN NaN NaN NaN NaN NaN 72.802 1 72.802 72.302 73.302 0 0 0 0 0.9435 1 40535 40535 0 0 1 54799 10605 36878 37701 63637 63637 0.2584762270923875 RRLKRQTA 8 Unmodified _RRLKRQTA_ 0 0 0 REV__nc|ENSG00000116783|Q59H18-1|TNNI3K;REV__nc|ENSG00000254685|O14772|FPGT REV__nc|ENSG00000254685|O14772|FPGT MSMS AL20221201_MKP_PDAC_01 4 514.8258056640625 2 514.825424 1027.63629 NaN NaN NaN NaN NaN NaN NaN 107.64 1 101.46 100.96 101.96 -6.1757 0 0 0 0.97444 1 71981 71981 0.69038 0 1 + 54800 29590;24527 36879 37702 63638 63638 0.12358184651088777 RRLKRQTA 8 Unmodified _RRLKRQTA_ 0 0 0 REV__nc|ENSG00000116783|Q59H18-1|TNNI3K;REV__nc|ENSG00000254685|O14772|FPGT REV__nc|ENSG00000254685|O14772|FPGT MSMS AL20221201_MKP_PDAC_01 4 514.828125 2 514.825424 1027.63629 NaN NaN NaN NaN NaN NaN NaN 108.18 1 102.01 101.51 102.51 -6.1757 0 0 0 0.97444 1 72315 72315 0.69038 0 1 + 54801 29590;24527 36879 37702 63639 63639 0.12358184651088777 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.0115356445312 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 106.93 1 100.76 100.26 101.26 -6.1757 0 0 0 0.9435 1 71554 71554 0 0 1 + 54802 25717 36880 37703 63640 63640 0.2238240940985179 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.3462524414062 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 107.08 1 100.91 100.41 101.41 -6.1757 0 0 0 0.9435 1 71644 71644 0 0 1 + 54803 25717 36880 37703 63641 63641 0.2238240940985179 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.0115356445312 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 107.76 1 101.58 101.08 102.08 -6.1757 0 0 0 0.9435 1 72053 72053 0 0 1 + 54804 25717 36880 37703 63642 63642 0.2238240940985179 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.0108032226562 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 108.5 1 102.33 101.83 102.83 -6.1757 0 0 0 0.9435 1 72515 72515 0 0 1 + 54805 25717 36880 37703 63643 63643 0.2238240940985179 RRLLHRWRRLR 11 Unmodified _RRLLHRWRRLR_ 0 0 0 REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.0106201171875 3 540.009826 1617.00765 NaN NaN NaN NaN NaN NaN NaN 109.08 1 102.91 102.41 103.41 -6.1757 0 0 0 0.9435 1 72871 72871 0 0 1 + 54806 25717 36880 37703 63644 63644 0.2238240940985179 RRLLLHLI 8 Unmodified _RRLLLHLI_ 0 0 0 REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF REV__ENST00000424919.1_1_X:150162237-150162561:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3538208007812 2 517.353286 1032.69202 -0.52315 -0.00027065 0.3665 0.00018961 -0.15665 -8.1043E-05 517.353114369095 105.99 0.15334 105.94 105.87 106.02 -0.048111 17 8 3 0 0 0 0.81107 1 58739 58739 0 0 1 4035100 + 54807 26884 36881 37704 63645 63645 0.17698017838711166 RRLLLLVPMRP 11 Unmodified _RRLLLLVPMRP_ 0 0 0 REV__ENSG00000149609|ENST00000375222|C20orf144 REV__ENSG00000149609|ENST00000375222|C20orf144 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.4400634765625 2 682.439566 1362.86458 NaN NaN NaN NaN NaN NaN NaN 104.37 1 104.32 103.82 104.82 -0.048737 0 0 0 0.9435 1 57947 57947 0 0 1 + 54808 21010 36882 37705 63646 63646 0.1976622118377236 RRLLLTLWSLS 11 Unmodified _RRLLLTLWSLS_ 0 0 0 ENST00000483825.5_1_1:167404074-167487702:-|nuORF ENST00000483825.5_1_1:167404074-167487702:-|nuORF ENST00000483825.5_1_1:167404074-167487702:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.9479064941406 3 453.281995 1356.82415 1.0881 0.00049321 0.17904 8.1155E-05 1.2671 0.00057437 453.28210895557083 100.68 0.15248 100.64 100.56 100.71 -0.04216 13 5 3 0 0 0 0.30604 1 55939 55939 0.08335 0 1 10731000 54809 14139 36883 37706 63647 63647 0.16001578064992827 RRLLPPLLLL 10 Unmodified _RRLLPPLLLL_ 0 0 0 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 ENSG00000167619|ENST00000301204|TMEM145 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 602.798095703125 2 602.418626 1202.8227 0.30305 0.00018256 0.12479 7.5175E-05 0.42784 0.00025774 602.418585152725 81.031 0.3812 74.855 74.679 75.06 -6.1757 34 21 2 0 0 0 0.24012 1 53070 53070 0 0 1 16614000 54810 7641 36884 37707 63648 63648 0.22939988766893293 RRLLQVRH 8 Unmodified _RRLLQVRH_ 0 0 0 REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.3424682617188 2 539.341241 1076.66793 NaN NaN NaN NaN NaN NaN NaN 107.93 1 101.76 101.26 102.26 -6.1757 0 0 0 0.97444 1 72160 72160 0.69038 0 1 + 54811 25852 36885 37708 63649 63649 0.13266177405034796 RRLLQVRH 8 Unmodified _RRLLQVRH_ 0 0 0 REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.3432006835938 2 539.341241 1076.66793 NaN NaN NaN NaN NaN NaN NaN 108.11 1 101.93 101.43 102.43 -6.1757 0 0 0 0.97444 1 72265 72265 0.69038 0 1 + 54812 25852 36885 37708 63650 63650 0.13266177405034796 RRLLQVRH 8 Unmodified _RRLLQVRH_ 0 0 0 REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.3419189453125 2 539.341241 1076.66793 NaN NaN NaN NaN NaN NaN NaN 108.66 1 102.48 101.98 102.98 -6.1757 0 0 0 0.97444 1 72609 72609 0.69038 0 1 + 54813 25852 36885 37708 63651 63651 0.13266177405034796 RRLLQVRH 8 Unmodified _RRLLQVRH_ 0 0 0 REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF REV__ENST00000357429.10_1_7:1036905-1037229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.3430786132812 2 539.341241 1076.66793 NaN NaN NaN NaN NaN NaN NaN 109.81 1 103.63 103.13 104.13 -6.1757 0 0 0 0.97444 1 73314 73314 0.69038 0 1 + 54814 25852 36885 37708 63652 63652 0.13266177405034796 RRLLVKHR 8 Unmodified _RRLLVKHR_ 0 0 0 REV__ENSG00000160877|ENST00000292431|NACC1 REV__ENSG00000160877|ENST00000292431|NACC1 MSMS AL20221201_MKP_PDAC_01 4 539.3595581054688 2 539.359434 1076.70431 NaN NaN NaN NaN NaN NaN NaN 104.31 1 98.135 97.635 98.635 -6.1757 0 0 0 0.97444 1 69867 69867 0.69038 0 1 + 54815 21571 36886 37709 63653 63653 0.16903054301724296 RRLNLVLHL 9 Unmodified _RRLNLVLHL_ 0 0 0 ENST00000369075.7_1_10:121658127-121658223:+|nuORF ENST00000369075.7_1_10:121658127-121658223:+|nuORF ENST00000369075.7_1_10:121658127-121658223:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3675537109375 2 567.366924 1132.7193 NaN NaN NaN NaN NaN NaN NaN 104.08 1 104.03 103.53 104.53 -0.048737 0 0 0 0.85737 1 57790 57790 0.6015 0 1 54816 12294 36887 37710 63654 63654 0.15824501379074718 RRLPAKAL 8 Unmodified _RRLPAKAL_ 0 0 0 REV__ENSG00000118094|ENST00000264029|TREH REV__ENSG00000118094|ENST00000264029|TREH MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.6126098632812 1 924.610146 923.602869 1.5418 0.0014256 -0.76492 -0.00070725 0.77687 0.0007183 924.6093662134975 104.12 0.13125 97.94 97.882 98.014 -6.1757 39 27 2 0 0 0 0.81107 1 69729 69729 0 0 1 3833800 + 54817 19134 36888 37711 63655 63655 0.13801182879160478 RRLPALAA 8 Unmodified _RRLPALAA_ 0 0 0 ENST00000294409.2_1_1:28995295-29010143:+|nuORF ENST00000294409.2_1_1:28995295-29010143:+|nuORF ENST00000294409.2_1_1:28995295-29010143:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2796020507812 2 434.279786 866.54502 0.20054 8.7091E-05 -0.016982 -7.3748E-06 0.18356 7.9716E-05 434.2796423052039 101.33 0.67287 101.33 101.03 101.71 0 54 29 2 0 0 0 0.81107 3 55806 55806;55908;56020 0 0 1 913120 54818 11484 36889 37712 63656;63657;63658 63656 0.10640920953721889 RRLPLFPAGF 10 Unmodified _RRLPLFPAGF_ 0 0 0 REV__ENST00000563985.1_1_16:56642603-56642816:+|nuORF REV__ENST00000563985.1_1_16:56642603-56642816:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5679626464844 3 391.901226 1172.68185 0.050014 1.9601E-05 2.8596 0.0011207 2.9096 0.0011403 391.90253851390065 37.949 0.12244 37.678 37.638 37.761 -0.27133 6 5 2 0 0 0 0.24005 1 19988 19988 0.77653 0 1 943150 + 54819 28887 36890 37713 63659 63659 0.10241410113439997 RRLPRVVKRR 10 Unmodified _RRLPRVVKRR_ 0 0 0 ENST00000549988.5_1_12:76453547-76478450:-|nuORF ENST00000549988.5_1_12:76453547-76478450:-|nuORF ENST00000549988.5_1_12:76453547-76478450:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1336.09375 1 1335.89201 1334.88474 -0.21409 -0.000286 -0.62138 -0.00083009 -0.83547 -0.0011161 1335.892466845737 39.067 0.30985 39.067 38.953 39.263 0 19 14 2 0 0 0 0.24012 1 20870 20870 0 0 1 1888400 54820 15158 36891 37714 63660 63660 0.23069152958578343 RRLPVPARL 9 Unmodified _RRLPVPARL_ 0 0 0 ENST00000603864.5_1_12:51663522-51663705:-|nuORF ENST00000603864.5_1_12:51663522-51663705:-|nuORF ENST00000603864.5_1_12:51663522-51663705:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.885498046875 3 359.90497 1076.69308 1.2813 0.00046116 -0.61568 -0.00022159 0.66565 0.00023957 359.9049420116327 32.792 0.58681 28.935 28.494 29.081 -3.8562 64 31 4 0 0 0 0.21874 1 18443 18443 0.26902 0 1 41219000 54821 15834 36892 37715 63661 63661 0.15780232207589506 RRLQPLTLTT 10 Unmodified _RRLQPLTLTT_ 0 0 0 ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 599.8673706054688 2 599.866954 1197.71936 NaN NaN NaN NaN NaN NaN NaN 106.1 1 99.929 99.429 100.43 -6.1757 0 0 0 0.99273 1 71044 71044 2.9952 1.9238 1 54822 14806 36893 37716 63662 63662 0.1284045658840114 RRLRFRKT 8 Unmodified _RRLRFRKT_ 0 0 0 REV__nc|ENSG00000197362|Q8N393-2|ZNF786 REV__nc|ENSG00000197362|Q8N393-2|ZNF786 MSMS AL20221201_MKP_PDAC_01 4 566.8643188476562 2 566.862341 1131.71013 NaN NaN NaN NaN NaN NaN NaN 106.79 1 100.61 100.11 101.11 -6.1757 0 0 0 0.97444 1 71464 71464 0.6015 0 1 + 54823 23918 36894 37717 63663 63663 0.14954152813402288 RRLRKGKVC 9 Unmodified _RRLRKGKVC_ 0 0 0 ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENST00000553691.5_1_14:77907431-77919723:-|nuORF ENSG00000151445|ENST00000557658|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3512573242188 2 558.350751 1114.68695 1.715 0.00095754 -1.2057 -0.00067321 0.50924 0.00028433 558.3499614174906 107.93 0.45736 101.75 101.58 102.04 -6.1757 147 92 2 0 0 0 0.61381 1 72245 72245 0.52476 0 1 3981900 54824 6113 36895 37718 63664 63664 0.13419390704439138 RRLRLHEL 8 Unmodified _RRLRLHEL_ 0 0 0 REV__ENSG00000069329|ENST00000299138|VPS35 REV__ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8409423828125 2 546.841074 1091.66759 1.7539 0.00095911 -0.88822 -0.00048572 0.86568 0.00047339 546.8405768013525 92.925 0.42976 92.948 92.897 93.327 0.022987 19 16 2 0 0 0 0.80975 1 51695 51695 0.79363 0 1 1495700 + 54825 17449 36896 37719 63665 63665 0.12542757685150718 RRLRLHEL 8 Unmodified _RRLRLHEL_ 0 0 0 REV__ENSG00000069329|ENST00000299138|VPS35 REV__ENSG00000069329|ENST00000299138|VPS35 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.841074 1091.66759 1.7539 0.00095911 -0.88822 -0.00048572 0.86568 0.00047339 546.8405768013525 92.925 0.42976 92.948 92.897 93.327 0.022987 0 0 NaN 0.79363 19 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1495700 + 54826 17449 36896 37719 0.12542757685150718 RRLRPLLRRRL 11 Unmodified _RRLRPLLRRRL_ 0 0 0 ENST00000453168.5_1_3:31574222-31574351:+|nuORF ENST00000453168.5_1_3:31574222-31574351:+|nuORF ENST00000453168.5_1_3:31574222-31574351:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 753.0076293945312 2 753.010402 1504.00625 NaN NaN NaN NaN NaN NaN NaN 83.385 1 83.448 82.948 83.948 0.063171 0 0 0 0.9435 1 46130 46130 0 0 1 54827 13550 36897 37720 63666 63666 0.274407753210653 RRLRRALI 8 Unmodified _RRLRRALI_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MSMS AL20221201_MKP_PDAC_01 4 527.3590698242188 2 527.359434 1052.70431 NaN NaN NaN NaN NaN NaN NaN 104.73 1 98.551 98.051 99.051 -6.1757 0 0 0 0.97444 1 70114 70114 2.8892 0 1 + 54828 23122 36898 37721 63667 63667 0.1800705430173366 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 795.01025390625 2 795.010402 1588.00625 1.8405 0.0014633 -1.4602 -0.0011608 0.38039 0.00030242 795.5107261796007 104.91 0.11154 98.734 98.662 98.773 -6.1757 14 8 2 0 0 0 0.7453 1 70216 70216 0 0 1 25373000 + 54829 26016 36899 37722 63668 63668 0.23576775321066634 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.343017578125 3 530.342693 1588.00625 1.5668 0.00083092 -1.119 -0.00059346 0.44775 0.00023746 530.3417926890262 104.93 0.10342 98.751 98.67 98.773 -6.1757 22 7 4 0 0 0 0.7453 1 70222 70222 0 0 1 37475000 + 54830 26016 36899 37722 63669 63669 0.23576775321066634 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.343017578125 3 530.342693 1588.00625 1.5671 0.00083112 -0.46119 -0.00024459 1.1059 0.00058653 530.3425010888362 109.7 1.8319 103.53 101.99 103.82 -6.1757 829 365 3 0 0 0 0.7453 10 72517 72517;72523;72633;72667;72778;72924;73029;73135;73243;73348 0 0 1 7506200 + 54831 26016 36899 37722 63670;63671;63672;63673;63674;63675;63676;63677;63678;63679 63670 0.23576775321066634 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 795.0095825195312 2 795.010402 1588.00625 NaN NaN NaN NaN NaN NaN NaN 104.23 1 98.053 97.553 98.553 -6.1757 0 0 0 0.9435 1 69816 69816 0 0 1 + 54832 26016 36899 37722 63680 63680 0.23576775321066634 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.6766357421875 3 530.342693 1588.00625 1.5671 0.00083112 -0.46119 -0.00024459 1.1059 0.00058653 530.3425010888362 109.7 1.8319 103.53 101.99 103.82 -6.1757 829 365 3 0 0 0 0.30605 1 72402 72402 0 0 1 7506200 + 54833 26016 36899 37722 63681 63681 0.23576775321066634 RRLRRFLFLRR 11 Unmodified _RRLRRFLFLRR_ 0 0 0 REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF REV__ENST00000368655.4_1_1:153800818-153895301:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 795.0095825195312 2 795.010402 1588.00625 1.8398 0.0014626 -1.6016 -0.0012733 0.23816 0.00018934 795.0083587799948 104.21 0.068146 98.031 98.001 98.069 -6.1757 5 3 2 0 0 0 0.30605 1 69816 69816 0 0 1 3666200 + 54834 26016 36899 37722 63682 63682 0.23576775321066634 RRLRRGDKH 9 Unmodified _RRLRRGDKH_ 0 0 0 ENST00000586061.1_1_19:783197-784896:+|nuORF ENST00000586061.1_1_19:783197-784896:+|nuORF ENST00000586061.1_1_19:783197-784896:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.9093322753906 3 398.574395 1192.70135 0.88322 0.00035203 0.96868 0.00038609 1.8519 0.00073812 398.5745970712116 91.454 0.4006 91.491 91.297 91.698 0.036499 16 14 2 0 0 0 0.60664 1 50910 50910 0.96228 0 1 2104700 54835 15616 36900 37723 63683 63683 0.11271179176924306 RRLRRRQRLRR 11 Unmodified _RRLRRRQRLRR_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MSMS AL20221201_MKP_PDAC_01 4 811.5296020507812 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 107.49 1 101.31 100.81 101.81 -6.1757 0 0 0 0.9435 1 71888 71888 0 0 1 + 54836 22533 36901 37724 63684 63684 0.2604771504434211 RRLRTKTAK 9 Unmodified _RRLRTKTAK_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MSMS AL20221201_MKP_PDAC_01 4 565.368896484375 2 565.367456 1128.72036 NaN NaN NaN NaN NaN NaN NaN 106.34 1 100.16 99.661 100.66 -6.1757 0 0 0 0.85852 1 71184 71184 0.45834 0.10771 1 54837 5031 36902 37725 63685 63685 0.16114715747994524 RRLSLRLLVLT 11 Unmodified _RRLSLRLLVLT_ 0 0 0 ENST00000544522.5_2_11:95523833-95528722:+|nuORF;ENST00000325542.9_1_11:95523833-95532462:+|nuORF ENST00000544522.5_2_11:95523833-95528722:+|nuORF ENST00000544522.5_2_11:95523833-95528722:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.4478759765625 2 670.448446 1338.88234 1.3153 0.00088185 -1.5557 -0.001043 -0.2404 -0.00016117 670.4477190901762 103.58 0.052521 97.404 97.388 97.44 -6.1757 7 5 2 0 0 0 0.74203 1 69456 69456 0.30703 0 1 4380300 54838 11812 36903 37726 63686 63686 0.22645259710247956 RRLVIYIK 8 Unmodified _RRLVIYIK_ 0 0 0 REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF REV__ENST00000539420.1_1_11:113286028-113288807:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8524780273438 2 530.853119 1059.69168 -0.59493 -0.00031582 -0.066386 -3.5241E-05 -0.66131 -0.00035106 530.8530307694253 105.95 0.14448 105.9 105.85 105.99 -0.048103 20 12 2 0 0 0 0.81107 1 58723 58723 0 0 1 6407500 + 54839 20991 36904 37727 63687 63687 0.16422598118811038 RRLYRRQERHR 11 Unmodified _RRLYRRQERHR_ 0 0 0 ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR ENSG00000185955|ENST00000332375|SPACDR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.4732666015625 2 813.469629 1624.92471 NaN NaN NaN NaN NaN NaN NaN 95.852 1 95.856 95.356 96.356 0.004158 0 0 0 0.9435 1 53247 53247 0 0 1 54840 9432 36905 37728 63688 63688 0.13724047891219016 RRMKKNTPE 9 Unmodified _RRMKKNTPE_ 0 0 0 REV__HNF1B|p.M315Ifs*13|1|0.07|ENSG00000275410|chr17:37731695-37731696|-/AT|frameshift_variant REV__HNF1B|p.M315Ifs*13|1|0.07|ENSG00000275410|chr17:37731695-37731696|-/AT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2165832519531 3 387.216997 1158.62916 0.51446 0.00019921 -0.075932 -2.9402E-05 0.43853 0.0001698 387.55153089404666 23.237 0.57149 20.459 20.203 20.774 -2.7784 152 44 4 0 0 0 0.46501 1 12674 12674 6.1918 0 1 190200000 + 54841 24652 36906 37729 63689 63689 0.056190839883583976 RRMMRAGC 8 Unmodified _RRMMRAGC_ 0 0 0 REV__ENSG00000076604|ENST00000262395|TRAF4 REV__ENSG00000076604|ENST00000262395|TRAF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7386169433594 2 490.738591 979.462629 NaN NaN NaN NaN NaN NaN NaN 0.82854 1 0.80792 0.30792 1.3079 -0.020623 0 0 0 0.97444 1 426 426 0 0 1 + 54842 17592 36907 37730 63690 63690 -0.027923837126991202 RRMVFLIRWNR 11 Unmodified _RRMVFLIRWNR_ 0 0 0 REV__ENST00000502537.1_1_4:86863224-86863332:+|nuORF REV__ENST00000502537.1_1_4:86863224-86863332:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 773.947021484375 2 773.948621 1545.88269 NaN NaN NaN NaN NaN NaN NaN 102.45 1 96.273 95.773 96.773 -6.1757 0 0 0 0.94184 1 68750 68750 1.1933 0.23107 1 + 54843 28023 36908 37731 63691 63691 0.13158356158464812 RRNDKIIVF 9 Unmodified _RRNDKIIVF_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5685119628906 3 387.568135 1159.68258 -0.24674 -9.5628E-05 1.2388 0.00048014 0.9921 0.00038451 387.56858113707807 37.206 0.32729 37.228 37.048 37.375 0.021545 40 14 4 0 0 0 0.24903 1 19718 19718 19.626 5.4078 1 8742200 54844 6962 36909 37732 63692 63692 0.10912204762507827 RRNDKIIVF 9 Unmodified _RRNDKIIVF_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MSMS AL20221201_MKP_PDAC_01 4 387.5695495605469 3 387.568135 1159.68258 NaN NaN NaN NaN NaN NaN NaN 83.904 1 77.728 77.228 78.228 -6.1757 0 0 0 0.40636 1 55180 55180 19.626 6.1073 1 54845 6962 36909 37732 63693 63693 0.10912204762507827 RRNKFWVRVRA 11 Unmodified _RRNKFWVRVRA_ 0 0 0 REV__nc|ENSG00000164093|Q99697-3|PITX2 REV__nc|ENSG00000164093|Q99697-3|PITX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 744.1197509765625 2 744.44456 1486.87457 -0.004524 -3.3679E-06 -0.56611 -0.00042144 -0.57063 -0.0004248 744.4440992054568 95.822 0.34035 95.822 95.687 96.028 0 30 22 2 0 0 0 0.74203 1 52916 52916 0.30703 0 1 501760 + 54846 18579 36910 37733 63694 63694 0.15060545233336597 RRNPHIDEI 9 Unmodified _RRNPHIDEI_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1;ENST00000474925.2_1_9:72356652-72374854:-|nuORF ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3102416992188 2 575.309803 1148.60505 0.50654 0.00029142 0.56845 0.00032703 1.075 0.00061845 575.3100565554852 59.237 0.77429 59.237 59.045 59.819 0 106 33 6 0 0 0 0.45045 1 33036 33036 10.074 0 1 766970000 54847 9680 36911 37734 63695 63695 0.03669566826351911 RRNRSRRRRFR 11 Unmodified _RRNRSRRRRFR_ 0 0 0 ENST00000481383.1_1_3:180688091-180688984:+|nuORF ENST00000481383.1_1_3:180688091-180688984:+|nuORF ENST00000481383.1_1_3:180688091-180688984:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 808.4888916015625 2 808.488688 1614.96282 NaN NaN NaN NaN NaN NaN NaN 103.42 1 97.242 96.742 97.742 -6.1757 0 0 0 0.94307 1 69340 69340 0.30703 0.30703 1 54848 14082 36912 37735 63696 63696 0.179939785965189 RRNTQEWTQEW 11 Unmodified _RRNTQEWTQEW_ 0 0 0 nc|ENSG00000112964|P10912-3|GHR;nc|ENSG00000112964|P10912-2|GHR;nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR nc|ENSG00000112964|P10912-3|GHR nc|ENSG00000112964|P10912-3|GHR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 767.0242309570312 2 767.363296 1532.71204 NaN NaN NaN NaN NaN NaN NaN 79.355 1 79.355 78.855 79.855 0 0 0 0 0.9435 1 44081 44081 0 0 1 54849 2932 36913 37736 63697 63697 -0.033009277499559175 RRNWKKQEM 9 Unmodified _RRNWKKQEM_ 0 0 0 REV__ENST00000447643.1_1_7:44047097-44047145:-|nuORF REV__ENST00000447643.1_1_7:44047097-44047145:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.5103149414062 3 425.896146 1274.66661 -0.52401 -0.00022318 0.05809 2.474E-05 -0.46592 -0.00019844 425.89630228269533 26.549 0.23135 26.549 26.468 26.699 0 19 10 3 0 0 0 0.21904 1 13713 13713 0.26902 0 1 810260 + 54850 27165 36914 37737 63698 63698 0.0402617525394362 RRPAAKRVVRG 11 Unmodified _RRPAAKRVVRG_ 0 0 0 ENST00000409072.3_2_7:38725570-38725973:-|nuORF ENST00000409072.3_2_7:38725570-38725973:-|nuORF ENST00000409072.3_2_7:38725570-38725973:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.0946044921875 2 633.404904 1264.79525 NaN NaN NaN NaN NaN NaN NaN 104.21 1 104.16 103.66 104.66 -0.048737 0 0 0 0.9435 1 57859 57859 0 0 1 54851 12953 36915 37738 63699 63699 0.17344898279179688 RRPDEVNQVI 10 Unmodified _RRPDEVNQVI_ 0 0 0 ENST00000359039.4_1_9:21335108-21335171:-|nuORF ENST00000359039.4_1_9:21335108-21335171:-|nuORF ENST00000359039.4_1_9:21335108-21335171:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.223876953125 3 409.226438 1224.65748 1.1543 0.00047235 -0.40756 -0.00016678 0.7467 0.00030557 409.2260432926333 50.237 0.44875 50.188 50.046 50.495 -0.048824 43 21 3 0 0 0 0.6966 1 27224 27224 1.5923 0.26264 1 3051200 54852 12137 36916 37739 63700 63700 0.05414105169279537 RRPGPGGK 8 Unmodified _RRPGPGGK_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7470397949219 2 412.746111 823.477669 0.73288 0.0003025 1.3622 0.00056222 2.095 0.00086472 412.7465336813687 71.42 0.47968 71.459 71.184 71.664 0.039024 44 21 3 0 0 0 0.81107 1 39268 39268 0 0 1 5024800 54853 10288 36917 37740 63701 63701 0.05886890742817741 RRPGRRRK 8 Unmodified _RRPGRRRK_ 0 0 0 REV__ENSG00000114933|ENST00000403263|INO80D REV__ENSG00000114933|ENST00000403263|INO80D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2344055175781 3 361.235713 1080.68531 NaN NaN NaN NaN NaN NaN NaN 55.334 1 55.265 54.765 55.765 -0.068737 0 0 0 0.97444 1 30068 30068 0.40072 0 1 + 54854 18943 36918 37741 63702 63702 0.1481951773066612 RRPGSLHGPWL 11 Unmodified _RRPGSLHGPWL_ 0 0 0 REV__ENSG00000162572|ENST00000379116|SCNN1D REV__ENSG00000162572|ENST00000379116|SCNN1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2411804199219 3 425.907151 1274.69962 -0.10983 -4.6779E-05 -0.15622 -6.6536E-05 -0.26605 -0.00011331 425.90701558710674 30.896 0.53321 30.926 30.69 31.223 0.030104 50 22 4 0 0 0 0.71341 1 16228 16228 1.2148 0 1 4153800 + 54855 21659 36919 37742 63703 63703 0.07326125368331304 RRPLLESRVA 10 Unmodified _RRPLLESRVA_ 0 0 0 ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENST00000469704.1_1_20:17934783-17949290:-|nuORF ENST00000469704.1_1_20:17934783-17949290:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5789794921875 3 399.578923 1195.71494 0.36135 0.00014439 0.070745 2.8268E-05 0.4321 0.00017266 399.57889225575684 24.327 0.49548 21.5 21.265 21.761 -2.8273 87 27 4 0 0 0 0.69917 1 13264 13264 1.4551 0 1 133110000 54856 13843 36920 37743 63704 63704 0.12490992165521675 RRPLLLLLLL 10 Unmodified _RRPLLLLLLL_ 0 0 0 ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 ENSG00000185896|ENST00000332556|LAMP1 MSMS AL20221201_MKP_PDAC_01 4 407.29345703125 3 407.291943 1218.854 NaN NaN NaN NaN NaN NaN NaN 11.901 1 9.4186 8.9186 9.9186 -2.482 0 0 0 1.0061 1 5992 5992 0 0 1 54857 9425 36921 37744 63705 63705 0.253325618009967 RRPLLLVRWM 10 Unmodified _RRPLLLVRWM_ 0 0 0 REV__ENST00000446526.7_1_17:74309045-74309081:-|nuORF REV__ENST00000446526.7_1_17:74309045-74309081:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.4091796875 2 670.410809 1338.80707 NaN NaN NaN NaN NaN NaN NaN 103 1 102.95 102.45 103.45 -0.047928 0 0 0 1.0024 1 57202 57202 0.40072 0 1 + 54858 27143 36922 37745 63706 63706 0.1512137897818775 RRPLPLLVPS 10 Unmodified _RRPLPLLVPS_ 0 0 0 REV__ENST00000377387.5_1_11:64532593-64532740:-|nuORF REV__ENST00000377387.5_1_11:64532593-64532740:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.3687744140625 2 574.369133 1146.72371 NaN NaN NaN NaN NaN NaN NaN 106.64 1 100.47 99.967 100.97 -6.1757 0 0 0 1.0024 1 71375 71375 0.40072 0 1 + 54859 26248 36923 37746 63707 63707 0.15621965801983606 RRPPKQKR 8 Unmodified _RRPPKQKR_ 0 0 0 REV__ENST00000485473.1_1_3:110607768-110611435:-|nuORF REV__ENST00000485473.1_1_3:110607768-110611435:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.3446044921875 2 533.341241 1064.66793 NaN NaN NaN NaN NaN NaN NaN 108.07 1 101.89 101.39 102.39 -6.1757 0 0 0 0.97444 1 72242 72242 0.69038 0 1 + 54860 26353 36924 37747 63708 63708 0.1381817740502811 RRPPRPGRGG 10 Unmodified _RRPPRPGRGG_ 0 0 0 ENST00000417410.6_1_8:42396848-42397127:+|nuORF ENST00000417410.6_1_8:42396848-42397127:+|nuORF ENST00000417410.6_1_8:42396848-42397127:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8281860351562 2 553.326122 1104.63769 0.27082 0.00014985 2.2285 0.0012331 2.4993 0.0013829 553.3274804810578 23.446 0.2694 23.467 23.322 23.592 0.021185 13 12 2 0 0 0 0.63399 1 12091 12091 9.3831 0.63772 1 2517800 54861 13056 36925 37748 63709 63709 0.08955818739832466 RRPQSLPF 8 Unmodified _RRPQSLPF_ 0 0 0 REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF REV__ENST00000354379.8_1_3:37217727-37217841:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7886657714844 2 500.787976 999.561398 1.657 0.00082982 -0.45335 -0.00022703 1.2037 0.00060279 500.7876230920592 92.809 0.29068 92.839 92.675 92.966 0.030197 25 11 3 0 0 0 0.70294 1 51608 51608 16.942 16.942 1 2165800 + 54862 25792 36926 37749 63710 63710 0.061600021198501054 RRPQTIIV 8 Unmodified _RRPQTIIV_ 0 0 0 REV__DHX30|p.I733Cfs*2|1|0.08|ENSG00000132153|chr3:47847867-47847868|AT/-|frameshift_variant REV__DHX30|p.I733Cfs*2|1|0.08|ENSG00000132153|chr3:47847867-47847868|AT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8117370605469 2 491.811451 981.608348 NaN NaN NaN NaN NaN NaN NaN 16.21 1 16.216 15.716 16.716 0.0050564 0 0 0 0.97444 1 8118 8118 0.69038 0 1 + 54863 16906 36927 37750 63711 63711 0.1168086167100455 RRPRDEWR 8 Unmodified _RRPRDEWR_ 0 0 0 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2279052734375 3 390.879484 1169.61662 -0.17085 -6.6783E-05 1.4798 0.00057842 1.3089 0.00051163 390.87995487287935 30.36 0.53106 30.39 29.946 30.477 0.030106 30 22 2 0 0 0 8.7369 1 15820 15820 1.4819 0 1 1542700 + 54864 16815 36928 37751 63712 63712 0.03859808640322626 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4991455078125 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 71.613 1 65.438 64.938 65.938 -6.1757 0 0 0 0.9435 1 46809 46809 0 0 1 54865 12371 36929 37752 63713 63713 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.5001220703125 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 71.825 1 65.65 65.15 66.15 -6.1757 0 0 0 0.9435 1 46971 46971 0 0 1 54866 12371 36929 37752 63714 63714 0.17108354607285037 RRPRRPRRWWR 11 Unmodified _RRPRRPRRWWR_ 0 0 0 ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4974365234375 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 74.929 1 68.753 68.253 69.253 -6.1757 0 0 0 0.94307 1 48992 48992 0.30703 0.30703 1 54867 12371 36929 37752 63715 63715 0.17108354607285037 RRPRTRRNLL 10 Unmodified _RRPRTRRNLL_ 0 0 0 nc|ENSG00000164125|Q6UWH4-3|GASK1B;ENSG00000164125|ENST00000585682|GASK1B;nc|ENSG00000164125|Q6UWH4-2|GASK1B nc|ENSG00000164125|Q6UWH4-3|GASK1B nc|ENSG00000164125|Q6UWH4-3|GASK1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.4244995117188 2 669.421085 1336.82762 1.3013 0.00087114 1.4195 0.00095022 2.7208 0.0018214 669.4221886636329 104.74 0.075142 98.56 98.513 98.588 -6.1757 11 10 2 0 0 0 0.72196 1 70113 70113 0.45834 0.057624 1 4935100 54868 16332 36930 37753 63716 63716 0.17267685682236333 RRPRVAKLAS 10 Unmodified _RRPRVAKLAS_ 0 0 0 ENSG00000162009|ENST00000689027|SSTR5 ENSG00000162009|ENST00000689027|SSTR5 ENSG00000162009|ENST00000689027|SSTR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3673095703125 2 577.367456 1152.72036 0.57681 0.00033303 0.66096 0.00038162 1.2378 0.00071465 577.3678763189113 80.559 0.333 80.616 80.455 80.788 0.057587 37 13 4 0 0 0 0.54684 1 44489 44489 13.906 0 1 30367000 54869 6828 36931 37754 63717 63717 0.1501071574798516 RRPVLLSG 8 Unmodified _RRPVLLSG_ 0 0 0 ENST00000519690.1_1_5:149829058-149829289:-|nuORF ENST00000519690.1_1_5:149829058-149829289:-|nuORF ENST00000519690.1_1_5:149829058-149829289:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2852783203125 2 449.285069 896.555585 0.25707 0.0001155 0.43458 0.00019525 0.69165 0.00031075 449.2852100857962 99.974 1.0013 99.816 99.298 100.3 -0.1575 50 35 2 0 0 0 0.80992 1 54599 54599 0.69038 0 1 959760 54870 14714 36932 37755 63718 63718 0.1031690360820221 RRPVLLSG 8 Unmodified _RRPVLLSG_ 0 0 0 ENST00000519690.1_1_5:149829058-149829289:-|nuORF ENST00000519690.1_1_5:149829058-149829289:-|nuORF ENST00000519690.1_1_5:149829058-149829289:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 449.285069 896.555585 0.38397 0.00017251 0.65409 0.00029387 1.0381 0.00046639 449.28519495470147 99.775 0.92538 99.775 99.533 100.46 0 -0.12568 0.00024881 NaN 0.69038 55 34 2 NaN NaN NaN NaN 0 NaN NaN 0 438320 54871 14714 36932 37755 0.1031690360820221 RRQAPLRQL 9 Unmodified _RRQAPLRQL_ 0 0 0 REV__ENST00000264930.9_2_5:1083933-1083963:-|nuORF REV__ENST00000264930.9_2_5:1083933-1083963:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.9037170410156 3 379.903629 1136.68906 1.004 0.00038141 -0.2128 -8.0844E-05 0.79117 0.00030057 379.9035705693768 26.889 0.32129 23.853 23.628 23.949 -3.0365 25 16 2 0 0 0 0.30562 1 14905 14905 16.149 0.90062 1 10190000 + 54872 25083 36933 37756 63719 63719 0.12618142713881753 RRQAPLRQL 9 Unmodified _RRQAPLRQL_ 0 0 0 REV__ENST00000264930.9_2_5:1083933-1083963:-|nuORF REV__ENST00000264930.9_2_5:1083933-1083963:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.903629 1136.68906 0.17857 6.784E-05 0.11166 4.2419E-05 0.29023 0.00011026 379.90392531143203 24.127 0.12498 24.149 24.091 24.216 0.021185 0.14795 0.00035209 NaN 16.149 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1386400 + 54873 25083 36933 37756 0.12618142713881753 RRQEAIYEM 9 Unmodified _RRQEAIYEM_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000465087.1_1_10:5494419-5494892:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5343017578125 3 399.201124 1194.58154 1.0545 0.00042098 -1.8531 -0.00073976 -0.79854 -0.00031878 399.1999168379734 32.5 0.25977 28.644 28.516 28.776 -3.8562 31 13 3 0 0 0 0.1685 1 18519 18519 19.626 12.524 1 13088000 54874 16391 36934 37757 63720 63720 -0.007966150025367824 RRQEAIYEM 9 Unmodified _RRQEAIYEM_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000465087.1_1_10:5494419-5494892:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2953491210938 2 598.298047 1194.58154 0.44381 0.00026553 -1.39 -0.00083162 -0.94617 -0.00056609 598.2964697940495 32.471 0.23798 28.615 28.494 28.732 -3.8562 26 12 3 0 0 0 0.040683 1 18542 18542 49.554 20.473 1 13229000 54875 16391 36934 37757 63721 63721 -0.007966150025367824 RRQEIYIDEF 10 Unmodified _RRQEIYIDEF_ 0 0 0 REV__ENSG00000007314|ENST00000435607|SCN4A REV__ENSG00000007314|ENST00000435607|SCN4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.9021911621094 3 456.901731 1367.68336 -0.14512 -6.6305E-05 1.5903 0.0007266 1.4452 0.00066029 456.90253441350876 39.42 0.21035 39.123 39.01 39.22 -0.29716 11 9 2 0 0 0 0.6966 1 20809 20809 3.3196 0 1 1508400 + 54876 17009 36935 37758 63722 63722 0.014229546208980537 RRQEIYIDEF 10 Unmodified _RRQEIYIDEF_ 0 0 0 REV__ENSG00000007314|ENST00000435607|SCN4A REV__ENSG00000007314|ENST00000435607|SCN4A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7443237304688 3 456.901731 1367.68336 -0.14512 -6.6305E-05 1.5903 0.0007266 1.4452 0.00066029 456.90253441350876 39.42 0.21035 39.123 39.01 39.22 -0.29716 11 9 2 0 0 0 0.23767 1 20785 20785 6.1918 1.4759 1 1508400 + 54877 17009 36935 37758 63723 63723 0.014229546208980537 RRQHRCRVAFM 11 Unmodified _RRQHRCRVAFM_ 0 0 0 REV__nc|ENSG00000060491|Q9NZT2-2|OGFR REV__nc|ENSG00000060491|Q9NZT2-2|OGFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 730.3853759765625 2 730.385331 1458.75611 NaN NaN NaN NaN NaN NaN NaN 19.429 1 19.437 18.937 19.937 0.0078487 0 0 0 0.9435 1 9883 9883 0 0 1 + 54878 17325 36936 37759 63724 63724 0.04508106661660349 RRQLWWWRRRP 11 Unmodified _RRQLWWWRRRP_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.4819946289062 2 848.482008 1694.94946 NaN NaN NaN NaN NaN NaN NaN 27.826 1 27.779 27.279 28.279 -0.046408 0 0 0 0.9435 1 14350 14350 0 0 1 + 54879 29159 36937 37760 63725 63725 0.12978727764539144 RRQLWWWRRRP 11 Unmodified _RRQLWWWRRRP_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.4803466796875 2 848.482008 1694.94946 NaN NaN NaN NaN NaN NaN NaN 67.713 1 67.231 66.731 67.731 -0.48218 0 0 0 0.9435 1 36998 36998 0 0 1 + 54880 29159 36937 37760 63726 63726 0.12978727764539144 RRQLWWWRRRP 11 Unmodified _RRQLWWWRRRP_ 0 0 0 REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.4810791015625 2 848.482008 1694.94946 NaN NaN NaN NaN NaN NaN NaN 33.567 1 33.596 33.096 34.096 0.028934 0 0 0 0.9435 1 17665 17665 0 0 1 + 54881 29159 36937 37760 63727 63727 0.12978727764539144 RRQPPHYPLFY 11 Unmodified _RRQPPHYPLFY_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MSMS AL20221201_MKP_PDAC_01 4 491.9293823242188 3 491.929844 1472.7677 NaN NaN NaN NaN NaN NaN NaN 75.36 1 69.184 68.684 69.684 -6.1757 0 0 0 0.92234 1 49283 49283 2.8433 0 1 + 54882 24010 36938 37761 63728 63728 0.05022950228317313 RRQQKEPL 8 Unmodified _RRQQKEPL_ 0 0 0 ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1 ENSG00000184922|ENST00000331495|FMNL1 ENSG00000184922|ENST00000331495|FMNL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.2087097167969 3 352.208718 1053.60433 NaN NaN NaN NaN NaN NaN NaN 16.313 1 16.314 15.814 16.814 0.0010548 0 0 0 0.97444 1 8039 8039 1.8442 0 1 54883 9303 36939 37762 63729 63729 0.07966772177269377 RRQQRLKRE 9 Unmodified _RRQQRLKRE_ 0 0 0 ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH ENSG00000159450|ENST00000614923|TCHH MSMS AL20221201_MKP_PDAC_01 4 635.3822021484375 2 635.384168 1268.75378 NaN NaN NaN NaN NaN NaN NaN 106.17 1 99.995 99.495 100.49 -6.1757 0 0 0 0.85798 1 71083 71083 0.52476 0 1 54884 6657 36940 37763 63730 63730 0.13015717519920145 RRQRPAGCGH 10 Unmodified _RRQRPAGCGH_ 0 0 0 REV__ENST00000416707.1_1_3:48732617-48754601:-|nuORF REV__ENST00000416707.1_1_3:48732617-48754601:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5216064453125 3 379.865069 1136.57338 -0.50447 -0.00019163 0.25411 9.6526E-05 -0.25036 -9.5105E-05 379.86514662026315 19.339 0.21528 19.362 19.253 19.468 0.023106 55 17 5 0 0 0 0.72607 1 9699 9699 0 0 1 20438000 + 54885 26726 36941 37764 63731 63731 0.01055295591390859 RRQRQRQWQWW 11 Unmodified _RRQRQRQWQWW_ 0 0 0 ENST00000247706.3_1_19:17411946-17414055:-|nuORF ENST00000247706.3_1_19:17411946-17414055:-|nuORF ENST00000247706.3_1_19:17411946-17414055:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 857.45263671875 2 857.450905 1712.88726 NaN NaN NaN NaN NaN NaN NaN 89.119 1 82.944 82.444 83.444 -6.1757 0 0 0 0.9435 1 58818 58818 0 0 1 54886 11128 36942 37765 63732 63732 0.05932956625588304 RRQRRRQA 8 Unmodified _RRQRRRQA_ 0 0 0 ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53;ENST00000600410.5_1_19:48257983-48259211:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF ENST00000598681.5_1_19:48248882-48259836:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 376.2330627441406 3 376.230739 1125.67039 NaN NaN NaN NaN NaN NaN NaN 22.232 1 19.497 18.997 19.997 -2.7348 0 0 0 0.97444 1 11949 11949 1.6526 0 1 54887 2311 36943 37766 63733 63733 0.11258025862707655 RRQRRRRGT 9 Unmodified _RRQRRRRGT_ 0 0 0 REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF REV__ENST00000261951.8_1_5:179921647-179956302:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.3818969726562 2 621.379752 1240.74495 1.3394 0.00083227 2.0178 0.0012538 3.3572 0.0020861 621.3811284704166 105.08 0.13593 98.903 98.828 98.964 -6.1757 48 19 3 0 0 0 0.59532 1 70349 70349 1.6526 0.45928 1 160960000 + 54888 25010 36944 37767 63734 63734 0.13420788674056894 RRQRVCSGEDP 11 Unmodified _RRQRVCSGEDP_ 0 0 0 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822937011719 3 434.882565 1301.62587 NaN NaN NaN NaN NaN NaN NaN 21.558 1 21.558 21.058 22.058 0 0 0 0 0.94287 1 10917 10917 0.45452 0.046251 1 54889 16509 36945 37768 63735 63735 -0.012882108563189831 RRQSRRRKKRF 11 Unmodified _RRQSRRRKKRF_ 0 0 0 REV__nc|ENSG00000186854|Q86V40-2|TRABD2A REV__nc|ENSG00000186854|Q86V40-2|TRABD2A MSMS AL20221201_MKP_PDAC_01 4 787.4903564453125 2 787.490365 1572.96618 NaN NaN NaN NaN NaN NaN NaN 99.38 1 93.205 92.705 93.705 -6.1757 0 0 0 0.94301 1 66167 66167 0.35063 0.043601 1 + 54890 23601 36946 37769 63736 63736 0.20261228650497287 RRQWQKAKEWW 11 Unmodified _RRQWQKAKEWW_ 0 0 0 ENSG00000166828|ENST00000300061|SCNN1G ENSG00000166828|ENST00000300061|SCNN1G ENSG00000166828|ENST00000300061|SCNN1G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.4263305664062 2 801.426033 1600.83751 NaN NaN NaN NaN NaN NaN NaN 71.293 1 71.293 70.793 71.793 0 0 0 0 0.9435 1 39713 39713 0 0 1 54891 7536 36947 37770 63737 63737 0.061128288969484856 RRQWWRPWLDH 11 Unmodified _RRQWWRPWLDH_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 818.423828125 2 818.423825 1634.8331 NaN NaN NaN NaN NaN NaN NaN 104.35 1 104.3 103.8 104.8 -0.048737 0 0 0 0.9435 1 57935 57935 0 0 1 54892 2128 36948 37771 63738 63738 0.04107364474020869 RRQYLRRLHYF 11 Unmodified _RRQYLRRLHYF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.4554443359375 2 804.455125 1606.8957 NaN NaN NaN NaN NaN NaN NaN 109.76 1 109.71 109.21 110.21 -0.047607 0 0 0 0.9435 1 60755 60755 0 0 1 54893 9204 36949 37772 63739 63739 0.11652510542216987 RRRARVVHML 10 Unmodified _RRRARVVHML_ 0 0 0 ENSG00000148734|ENST00000277942|NPFFR1 ENSG00000148734|ENST00000277942|NPFFR1 ENSG00000148734|ENST00000277942|NPFFR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3934936523438 2 647.393482 1292.77241 NaN NaN NaN NaN NaN NaN NaN 14.963 1 14.968 14.468 15.468 0.0057774 0 0 0 1.0061 1 7439 7439 0 0 1 54894 5960 36950 37773 63740 63740 0.13773555890088574 RRRARWHWRHL 11 Unmodified _RRRARWHWRHL_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 815.4616088867188 2 815.46415 1628.91375 NaN NaN NaN NaN NaN NaN NaN 84.674 1 78.499 77.999 78.999 -6.1757 0 0 0 0.94301 1 55718 55718 0.35063 0.35063 1 54895 15861 36951 37774 63741 63741 0.12444690307575001 RRRARWHWRHL 11 Unmodified _RRRARWHWRHL_ 0 0 0 ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF ENST00000607222.1_1_1:1550199-1550712:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 815.4633178710938 2 815.46415 1628.91375 NaN NaN NaN NaN NaN NaN NaN 84.969 1 78.793 78.293 79.293 -6.1757 0 0 0 0.94301 1 55933 55933 0.35063 0.35063 1 54896 15861 36951 37774 63742 63742 0.12444690307575001 RRRCCCCCSD 10 Unmodified _RRRCCCCCSD_ 0 0 0 ENST00000308086.2_1_12:72057128-72057308:+|nuORF ENST00000308086.2_1_12:72057128-72057308:+|nuORF ENST00000308086.2_1_12:72057128-72057308:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.7166748046875 2 602.716672 1203.41879 NaN NaN NaN NaN NaN NaN NaN 9.9111 1 9.9287 9.4287 10.429 0.017581 0 0 0 1.0061 1 4910 4910 0 0 1 54897 11650 36952 37775 63743 63743 -0.17478104263682326 RRRCRRRQPWR 11 Unmodified _RRRCRRRQPWR_ 0 0 0 ENST00000265340.11_1_5:134369665-134369908:-|nuORF ENST00000265340.11_1_5:134369665-134369908:-|nuORF ENST00000265340.11_1_5:134369665-134369908:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2358703613281 4 407.236822 1624.91818 0.39418 0.00016052 -0.98701 -0.00040195 -0.59283 -0.00024142 407.4871972588106 24.404 0.38549 21.577 21.428 21.814 -2.8273 54 21 3 0 0 0 0.74452 1 13248 13248 0.073264 0.073264 1 12852000 54898 11329 36953 37776 63744 63744 0.13071831458842098 RRRDNRRRRFL 11 Unmodified _RRRDNRRRRFL_ 0 0 0 REV__ENSG00000134030|ENST00000256413|CTIF REV__ENSG00000134030|ENST00000256413|CTIF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3218994140625 3 534.32084 1599.94069 0.055533 2.9672E-05 1.6243 0.00086788 1.6798 0.00089755 534.6561011167689 14.638 0.19291 14.645 14.581 14.774 0.0073986 15 7 4 0 0 0 0.71728 1 7270 7270 2.6312 2.223 1 16428000 + 54899 19948 36954 37777 63745 63745 0.16471754128087923 RRRDYFYNYLR 11 Unmodified _RRRDYFYNYLR_ 0 0 0 REV__nc|ENSG00000178999|Q96GD4-4|AURKB REV__nc|ENSG00000178999|Q96GD4-4|AURKB MSMS AL20221201_MKP_PDAC_01 4 811.423828125 2 811.420948 1620.82734 NaN NaN NaN NaN NaN NaN NaN 62.548 1 56.372 55.872 56.872 -6.1757 0 0 0 0.94287 1 40366 40366 0.30703 0 1 + 54900 23078 36955 37778 63746 63746 0.04176221171724137 RRREEEMRRQQ 11 Unmodified _RRREEEMRRQQ_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000473525.1_1_X:70516758-70517827:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.7309265136719 4 394.207661 1572.80154 0.032058 1.2637E-05 -1.6035 -0.0006321 -1.5714 -0.00061946 394.20706584099077 28.403 0.25771 28.432 28.286 28.544 0.029564 30 10 5 0 0 0 0.30604 1 14734 14734 0.073264 0.073264 1 10055000 54901 5827 36956 37779 63747 63747 0.038050036577487845 RRREELYRQYF 11 Unmodified _RRREELYRQYF_ 0 0 0 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 ENSG00000124160|ENST00000290231|NCOA5 MSMS AL20221201_MKP_PDAC_01 4 808.4273681640625 2 808.42623 1614.83791 NaN NaN NaN NaN NaN NaN NaN 85.58 1 79.404 78.904 79.904 -6.1757 0 0 0 0.94144 1 56371 56371 1.4819 1.4819 1 54902 3753 36957 37780 63748 63748 0.05508203826138924 RRREHEKLMEY 11 Unmodified _RRREHEKLMEY_ 0 0 0 REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2683715820312 3 516.268419 1545.78343 0.091652 4.7317E-05 -1.4766 -0.0007623 -1.3849 -0.00071499 516.2677840660111 85.287 0.7589 79.111 78.72 79.479 -6.1757 115 46 3 0 0 0 0.50268 2 55980 55980;56243 16.275 4.6432 1 31799000 + 54903 18373 36958 37781 63749;63750 63749 0.032368686830523075 RRRERRRRKRQ 11 Unmodified _RRRERRRRKRQ_ 0 0 0 REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 827.0153198242188 2 827.01507 1652.01559 NaN NaN NaN NaN NaN NaN NaN 39.799 1 35.27 34.77 35.77 -4.5294 0 0 0 0.9435 1 23674 23674 0 0 1 + 54904 27125 36959 37782 63751 63751 0.2156593665931723 RRRETDRLFF 10 Unmodified _RRRETDRLFF_ 0 0 0 REV__ENSG00000114656|ENST00000645291|CFAP92 REV__ENSG00000114656|ENST00000645291|CFAP92 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7619934082031 3 465.924982 1394.75312 0.30315 0.00014124 -4.3709 -0.0020365 -4.0677 -0.0018953 465.92233086823074 59.384 0.16649 59.33 59.293 59.46 -0.053062 14 8 2 0 0 0 0.23973 1 32410 32410 3.0723 0.44103 1 2307800 + 54905 18926 36960 37783 63752 63752 0.07152878080160008 RRRFGKKK 8 Unmodified _RRRFGKKK_ 0 0 0 REV__ENST00000556103.1_1_14:23946657-23947232:+|nuORF REV__ENST00000556103.1_1_14:23946657-23947232:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3516845703125 2 538.351609 1074.68866 NaN NaN NaN NaN NaN NaN NaN 104.09 1 104.04 103.54 104.54 -0.048737 0 0 0 0.97444 1 57794 57794 0 0 1 + 54906 19665 36961 37784 63753 63753 0.15430767784687305 RRRFQRRMQRL 11 Unmodified _RRRFQRRMQRL_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP;ENST00000454020.1_3_2:234756047-234763110:-|nuORF nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 801.9715576171875 2 801.970951 1601.92735 NaN NaN NaN NaN NaN NaN NaN 76.801 1 76.851 76.351 77.351 0.05011 0 0 0 0.9435 1 42381 42381 0 0 1 54907 3713 36962 37785 63754 63754 0.15046180024501155 RRRFRGTA 8 Unmodified _RRRFRGTA_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3036193847656 2 510.302116 1018.58968 1.3884 0.0007085 0.70359 0.00035904 2.092 0.0010675 510.3024268937145 105.12 0.12571 98.947 98.883 99.008 -6.1757 49 23 3 0 0 0 0.80992 1 70378 70378 0.69038 0 1 128450000 + 54908 24515 36963 37786 63755 63755 0.08112744819800355 RRRFRRLDRRW 11 Unmodified _RRRFRRLDRRW_ 0 0 0 REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF REV__ENST00000505007.5_1_5:138941007-138941097:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.254638671875 3 558.332968 1671.97708 0.9811 0.00054778 2.5141 0.0014037 3.4952 0.0019515 558.6696531615012 72.884 0.055946 66.708 66.678 66.734 -6.1757 4 2 2 0 0 0 0.30604 1 47677 47677 0.073264 0.073264 1 6931700 + 54909 28063 36964 37787 63756 63756 0.16796631024794806 RRRHHHHNHHH 11 Unmodified _RRRHHHHNHHH_ 0 0 0 nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3 nc|ENSG00000012211|O43900-2|PRICKLE3 nc|ENSG00000012211|O43900-2|PRICKLE3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 780.8919067382812 2 780.891881 1559.76921 NaN NaN NaN NaN NaN NaN NaN 94.25 1 93.829 93.329 94.329 -0.42044 0 0 0 0.9435 1 51496 51496 0 0 1 54910 459 36965 37788 63757 63757 0.011714418803194349 RRRHLFPKKRK 11 Unmodified _RRRHLFPKKRK_ 0 0 0 REV__ENSG00000083168|ENST00000265713|KAT6A REV__ENSG00000083168|ENST00000265713|KAT6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 761.489990234375 2 761.489302 1520.96405 NaN NaN NaN NaN NaN NaN NaN 104.36 1 104.31 103.81 104.81 -0.048737 0 0 0 0.9435 1 57942 57942 0 0 1 + 54911 17714 36966 37789 63758 63758 0.22440799912715192 RRRHQRKYRRY 11 Unmodified _RRRHQRKYRRY_ 0 0 0 nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 838.2794189453125 2 837.985447 1673.95634 NaN NaN NaN NaN NaN NaN NaN 86.86 1 86.918 86.418 87.418 0.05822 0 0 0 0.9435 1 48267 48267 0 0 1 54912 3327 36967 37790 63759 63759 0.14632040645165034 RRRHRIIHLL 10 Unmodified _RRRHRIIHLL_ 0 0 0 REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF REV__ENST00000593209.5_2_17:40340836-40341070:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.442626953125 2 685.441821 1368.86909 1.7522 0.001201 0.22045 0.00015111 1.9726 0.0013521 685.4416459549458 105.67 0.50912 99.493 99.324 99.834 -6.1757 151 51 4 0 0 0 0.72607 1 70942 70942 0 0 1 41759000 + 54913 29190 36968 37791 63760 63760 0.1994086644156141 RRRHRPRRRRL 11 Unmodified _RRRHRPRRRRL_ 0 0 0 ENST00000532915.1_1_11:62538888-62545815:+|nuORF;ENST00000524976.5_1_11:62538888-62549806:+|nuORF ENST00000532915.1_1_11:62538888-62545815:+|nuORF ENST00000532915.1_1_11:62538888-62545815:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.0120239257812 2 808.014873 1614.01519 NaN NaN NaN NaN NaN NaN NaN 101.26 1 101.26 100.76 101.76 0 0 0 0 0.9435 1 55868 55868 0 0 1 54914 14788 36969 37792 63761 63761 0.23274561730136156 RRRHRQRKRER 11 Unmodified _RRRHRQRKRER_ 0 0 0 ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 817.4921264648438 2 817.49397 1632.97339 NaN NaN NaN NaN NaN NaN NaN 75.01 1 75.01 74.51 75.51 0 0 0 0 0.9435 1 41731 41731 0 0 1 54915 15071 36970 37793 63762 63762 0.18221961250924323 RRRHRQRKRER 11 Unmodified _RRRHRQRKRER_ 0 0 0 ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF ENST00000543442.1_1_12:67660488-67660587:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 817.4996948242188 2 817.49397 1632.97339 NaN NaN NaN NaN NaN NaN NaN 107.62 1 101.44 100.94 101.94 -6.1757 0 0 0 0.9435 1 71969 71969 0 0 1 54916 15071 36970 37793 63763 63763 0.18221961250924323 RRRIFKTRLWN 11 Unmodified _RRRIFKTRLWN_ 0 0 0 REV__ENSG00000133216|ENST00000374630|EPHB2 REV__ENSG00000133216|ENST00000374630|EPHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.9801025390625 3 515.979421 1544.91643 0.56862 0.0002934 0.065603 3.385E-05 0.63423 0.00032725 515.9792813146748 100.8 0.29492 100.76 100.6 100.9 -0.04216 24 10 5 0 0 0 0.7453 1 56001 56001 0 0 1 7970200 + 54917 19914 36971 37794 63764 63764 0.16577100921881538 RRRKIRLITEK 11 Unmodified _RRRKIRLITEK_ 0 0 0 REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B MSMS AL20221201_MKP_PDAC_01 4 490.3252258300781 3 490.323076 1467.9474 NaN NaN NaN NaN NaN NaN NaN 104.72 1 98.548 98.048 99.048 -6.1757 0 0 0 0.94181 1 70112 70112 1.2148 1.1315 1 + 54918 22057 36972 37795 63765 63765 0.23214254236086163 RRRKKERKEKR 11 Unmodified _RRRKKERKEKR_ 0 0 0 ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000137573|ENST00000402687|SULF1 ENST00000521946.5_1_8:70505207-70554528:+|nuORF ENST00000521946.5_1_8:70505207-70554528:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.0012817382812 3 524.000996 1568.98116 -0.66053 -0.00034612 2.8476 0.0014921 2.1871 0.001146 524.0019913614802 103.69 0.09816 103.64 103.57 103.67 -0.047928 5 3 2 0 0 0 0.7453 1 57597 57597 0 0 1 1480900 54919 4947 36973 37796 63766 63766 0.2194267572785975 RRRKLTKRLKA 11 Unmodified _RRRKLTKRLKA_ 0 0 0 REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 713.4840087890625 2 713.483686 1424.95282 NaN NaN NaN NaN NaN NaN NaN 104.13 1 104.08 103.58 104.58 -0.048737 0 0 0 0.9435 1 57818 57818 0 0 1 + 54920 29323 36974 37797 63767 63767 0.2573397781859512 RRRKLTKRLKA 11 Unmodified _RRRKLTKRLKA_ 0 0 0 REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF REV__ENST00000608163.1_1_10:46215370-46222350:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 713.4839477539062 2 713.483686 1424.95282 NaN NaN NaN NaN NaN NaN NaN 104.13 1 97.958 97.458 98.458 -6.1757 0 0 0 0.9435 1 69758 69758 0 0 1 + 54921 29323 36974 37797 63768 63768 0.2573397781859512 RRRKPRRRRRW 11 Unmodified _RRRKPRRRRRW_ 0 0 0 REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 840.045654296875 2 840.030523 1678.04649 NaN NaN NaN NaN NaN NaN NaN 28.481 1 25.333 24.833 25.833 -3.1482 0 0 0 0.9435 1 15892 15892 0 0 1 + 54922 28825 36975 37798 63769 63769 0.23459134764220835 RRRKRKWRRR 10 Unmodified _RRRKRKWRRR_ 0 0 0 REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.0047607421875 3 518.669803 1552.98758 -0.56919 -0.00029522 1.7441 0.0009046 1.1749 0.00060938 519.0052923594138 103.94 0.08535 103.89 103.85 103.94 -0.048737 6 3 2 0 0 0 0.72607 1 57725 57725 0 0 1 2726900 + 54923 24961 36976 37799 63770 63770 0.233206584699019 RRRKRKWRRRR 11 Unmodified _RRRKRKWRRRR_ 0 0 0 REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.55419921875 2 855.551622 1709.08869 NaN NaN NaN NaN NaN NaN NaN 107.23 1 101.06 100.56 101.56 -6.1757 0 0 0 0.9435 1 71737 71737 0 0 1 + 54924 24961 36977 37800 63771 63771 0.2625111017259769 RRRKRKWRRRR 11 Unmodified _RRRKRKWRRRR_ 0 0 0 REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 855.5546264648438 2 855.551622 1709.08869 NaN NaN NaN NaN NaN NaN NaN 107.68 1 101.51 101.01 102.01 -6.1757 0 0 0 0.9435 1 72005 72005 0 0 1 + 54925 24961 36977 37800 63772 63772 0.2625111017259769 RRRKRLKKKD 10 Unmodified _RRRKRLKKKD_ 0 0 0 nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;ENSG00000032219|ENST00000355431|ARID4A nc|ENSG00000032219|P29374-3|ARID4A nc|ENSG00000032219|P29374-3|ARID4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.4601440429688 2 692.46021 1382.90587 -0.47966 -0.00033215 0.41705 0.00028879 -0.06261 -4.3355E-05 692.4604395796952 103.64 0.14452 103.59 103.55 103.69 -0.047928 7 5 2 0 0 0 0.72607 1 57567 57567 0 0 1 2491900 54926 591 36978 37801 63773 63773 0.2297311826744135 RRRKRPRVRPQ 11 Unmodified _RRRKRPRVRPQ_ 0 0 0 REV__ENSG00000133247|ENST00000255613|KMT5C REV__ENSG00000133247|ENST00000255613|KMT5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 752.9791259765625 2 752.979633 1503.94471 NaN NaN NaN NaN NaN NaN NaN 104.02 1 103.97 103.47 104.47 -0.048737 0 0 0 0.94307 1 57757 57757 0.30703 0 1 + 54927 19917 36979 37802 63774 63774 0.21289843621821092 RRRKRRKRRRF 11 Unmodified _RRRKRRKRRRF_ 0 0 0 REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.0491333007812 2 836.046173 1670.07779 NaN NaN NaN NaN NaN NaN NaN 109.1 1 109.06 108.56 109.56 -0.047607 0 0 0 0.9435 1 60408 60408 0 0 1 + 54928 27848 36980 37803 63775 63775 0.2695570779831087 RRRKWIRYRRY 11 Unmodified _RRRKWIRYRRY_ 0 0 0 nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.0097045898438 2 855.00839 1708.00223 NaN NaN NaN NaN NaN NaN NaN 93.838 1 93.861 93.361 94.361 0.022987 0 0 0 0.9435 1 52163 52163 0 0 1 54929 10364 36981 37804 63776 63776 0.17654685827369576 RRRLIGKLH 9 Unmodified _RRRLIGKLH_ 0 0 0 REV__FGF16|p.G125Efs*10|1|0.05|ENSG00000196468|chrX:77454255-77454256|-/AGGATGT|frameshift_variant REV__FGF16|p.G125Efs*10|1|0.05|ENSG00000196468|chrX:77454255-77454256|-/AGGATGT|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8795776367188 2 574.877991 1147.74143 1.6349 0.00093989 0.39279 0.00022581 2.0277 0.0011657 574.8780117164172 105.12 0.19075 98.946 98.841 99.032 -6.1757 126 32 5 0 0 0 0.62242 1 70346 70346 0 0 1 2390700000 + 54930 18247 36982 37805 63777 63777 0.17346725847528432 RRRLLKVPRLL 11 Unmodified _RRRLLKVPRLL_ 0 0 0 REV__ENSG00000139044|ENST00000266383|B4GALNT3 REV__ENSG00000139044|ENST00000266383|B4GALNT3 MSMS AL20221201_MKP_PDAC_01 4 710.4913940429688 2 710.490979 1418.96741 NaN NaN NaN NaN NaN NaN NaN 19.432 1 16.776 16.276 17.276 -2.6564 0 0 0 0.9435 1 10291 10291 0 0 1 + 54931 20382 36983 37806 63778 63778 0.27468049966751096 RRRLNTRWRRL 11 Unmodified _RRRLNTRWRRL_ 0 0 0 ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4;ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;ENST00000560315.5_1_14:24657420-24657993:-|nuORF;ENST00000558193.5_1_14:24657452-24657993:-|nuORF ENSG00000196497|ENST00000354464|IPO4 ENSG00000196497|ENST00000354464|IPO4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 791.9869995117188 2 791.984915 1581.95528 NaN NaN NaN NaN NaN NaN NaN 80.102 1 80.159 79.659 80.659 0.057587 0 0 0 0.9435 1 44267 44267 0 0 1 54932 9827 36984 37807 63779 63779 0.18757826276259948 RRRLPHLLC 9 Unmodified _RRRLPHLLC_ 0 0 0 ENST00000509294.1_1_5:470082-471349:+|nuORF;ENST00000515601.6_1_5:471214-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF ENST00000509294.1_1_5:470082-471349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3527221679688 2 582.350751 1162.68695 3.2242 0.0018776 0.42182 0.00024565 3.646 0.0021233 582.3508143529597 97.095 0.6497 97.088 96.799 97.448 -0.007019 73 24 4 0 0 0 0.62242 2 53917 53917;54022 0 0 1 199650000 54933 14576 36985 37808 63780;63781 63780 0.11211390704443147 RRRLQRRRQL 10 Unmodified _RRRLQRRRQL_ 0 0 0 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.9760437011719 3 479.974781 1436.90251 NaN NaN NaN NaN NaN NaN NaN 103.74 1 103.69 103.19 104.19 -0.048737 0 0 0 1.0048 1 57610 57610 0.13989 0.056541 1 54934 10534 36986 37809 63782 63782 0.20153868213446913 RRRLRGLG 8 Unmodified _RRRLRGLG_ 0 0 0 ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF ENST00000545654.5_1_11:95522396-95522864:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.32080078125 2 492.320309 982.626064 0.17143 8.4399E-05 1.3231 0.00065141 1.4946 0.00073581 492.3205083219448 103.14 0.13254 103.14 103.12 103.26 0 13 8 2 0 0 0 0.81107 1 56885 56885 0 0 1 136290 54935 15097 36987 37810 63783 63783 0.1340562171652664 RRRLRHALHRL 11 Unmodified _RRRLRHALHRL_ 0 0 0 REV__nc|ENSG00000141644|Q9UIS9-9|MBD1 REV__nc|ENSG00000141644|Q9UIS9-9|MBD1 MSMS AL20221201_MKP_PDAC_01 4 495.3153686523438 3 495.315026 1482.92325 NaN NaN NaN NaN NaN NaN NaN 109.47 1 103.29 102.79 103.79 -6.1757 0 0 0 0.9435 1 73105 73105 0 0 1 + 54936 29666 36988 37811 63784 63784 0.2011045859310343 RRRLRPNKFRH 11 Unmodified _RRRLRPNKFRH_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2222290039062 4 384.736817 1534.91816 0.49519 0.00019052 0.97705 0.00037591 1.4722 0.00056642 384.7376552182679 42.682 0.65941 42.673 42.491 43.151 -0.0088196 48 30 3 0 0 0 0.30604 1 22851 22851 0 0 1 5264100 54937 1992 36989 37812 63785 63785 0.17210154730469185 RRRLRTAALRP 11 Unmodified _RRRLRTAALRP_ 0 0 0 ENSG00000184709|ENST00000371542|LRRC26;nc|ENSG00000184709|Q2I0M4-2|LRRC26;ENST00000568665.1_1_9:140063308-140066381:-|nuORF ENSG00000184709|ENST00000371542|LRRC26 ENSG00000184709|ENST00000371542|LRRC26 MSMS AL20221201_MKP_PDAC_01 4 455.9614562988281 3 455.960249 1364.85892 NaN NaN NaN NaN NaN NaN NaN 18.354 1 15.732 15.232 16.232 -2.6215 0 0 0 0.94287 1 9660 9660 0.45452 0.046251 1 54938 9287 36990 37813 63786 63786 0.19108258716300952 RRRLRVRRW 9 Unmodified _RRRLRVRRW_ 0 0 0 ENST00000309993.2_1_3:135913869-135914463:-|nuORF ENST00000309993.2_1_3:135913869-135914463:-|nuORF ENST00000309993.2_1_3:135913869-135914463:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.4322509765625 2 677.431787 1352.84902 NaN NaN NaN NaN NaN NaN NaN 86.404 1 86.404 85.904 86.904 0 0 0 0 0.8622 1 47861 47861 0 0 1 54939 11671 36991 37814 63787 63787 0.18671115501592794 RRRLRVRRW 9 Unmodified _RRRLRVRRW_ 0 0 0 ENST00000309993.2_1_3:135913869-135914463:-|nuORF ENST00000309993.2_1_3:135913869-135914463:-|nuORF ENST00000309993.2_1_3:135913869-135914463:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.4315185546875 2 677.431787 1352.84902 NaN NaN NaN NaN NaN NaN NaN 88.946 1 88.442 87.942 88.942 -0.50423 0 0 0 0.8622 1 48638 48638 0 0 1 54940 11671 36991 37814 63788 63788 0.18671115501592794 RRRLWRWWWKL 11 Unmodified _RRRLWRWWWKL_ 0 0 0 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 871.5010986328125 2 871.504952 1740.99535 NaN NaN NaN NaN NaN NaN NaN 59.599 1 59.545 59.045 60.045 -0.053062 0 0 0 0.9435 1 32489 32489 0 0 1 54941 81 36992 37815 63789 63789 0.15449372946795847 RRRMRRRRRRP 11 Unmodified _RRRMRRRRRRP_ 0 0 0 nc|ENSG00000182872|P0DW28|RBM10 nc|ENSG00000182872|P0DW28|RBM10 nc|ENSG00000182872|P0DW28|RBM10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.5169677734375 2 826.514183 1651.01381 NaN NaN NaN NaN NaN NaN NaN 72.96 1 73.001 72.501 73.501 0.041725 0 0 0 0.9435 1 40188 40188 0 0 1 54942 16440 36993 37816 63790 63790 0.21434604369710542 RRRNQNRVPLL 11 Unmodified _RRRNQNRVPLL_ 0 0 0 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 ENSG00000242732|ENST00000609883|RTL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 711.4308471679688 2 711.43165 1420.84875 NaN NaN NaN NaN NaN NaN NaN 102.63 1 102.59 102.09 103.09 -0.047607 0 0 0 0.94307 1 57006 57006 0.30703 0.071187 1 54943 10701 36994 37817 63791 63791 0.15515650991096663 RRRPARKR 8 Unmodified _RRRPARKR_ 0 0 0 REV__ENST00000607124.1_1_6:27100471-27100510:-|nuORF REV__ENST00000607124.1_1_6:27100471-27100510:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.0213623046875 2 548.357757 1094.70096 NaN NaN NaN NaN NaN NaN NaN 103.97 1 103.92 103.42 104.42 -0.048737 0 0 0 0.97444 1 57730 57730 0.69038 0 1 + 54944 29307 36995 37818 63792 63792 0.15739804247732536 RRRPFWKRRKK 11 Unmodified _RRRPFWKRRKK_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MSMS AL20221201_MKP_PDAC_01 4 807.5069580078125 2 807.508026 1613.0015 NaN NaN NaN NaN NaN NaN NaN 104.41 1 98.234 97.734 98.734 -6.1757 0 0 0 0.9435 1 69926 69926 0 0 1 54945 16141 36996 37819 63793 63793 0.2195189117830978 RRRPLINLR 9 Unmodified _RRRPLINLR_ 0 0 0 REV__ENST00000452622.1_1_7:562147-562501:+|nuORF REV__ENST00000452622.1_1_7:562147-562501:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 597.39013671875 2 597.388722 1192.76289 NaN NaN NaN NaN NaN NaN NaN 108.42 1 102.25 101.75 102.75 -6.1757 0 0 0 0.85798 1 72468 72468 0.52476 0 1 + 54946 27221 36997 37820 63794 63794 0.17422110876213992 RRRPRRWL 8 Unmodified _RRRPRRWL_ 0 0 0 ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF ENST00000251102.12_1_16:57965650-57974178:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.250732421875 3 399.251363 1194.73226 NaN NaN NaN NaN NaN NaN NaN 29.705 1 29.735 29.235 30.235 0.030106 0 0 0 0.97444 1 15515 15515 1.8442 0.38912 1 54947 11144 36998 37821 63795 63795 0.14268377281837274 RRRQHHMI 8 Unmodified _RRRQHHMI_ 0 0 0 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 REV__nc|ENSG00000145536|Q8TE57-2|ADAMTS16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8172607421875 2 567.3147 1132.61485 0.6216 0.00035264 2.1501 0.0012198 2.7717 0.0015724 567.3161791253451 89.043 0.341 88.539 88.298 88.639 -0.50423 20 14 2 0 0 0 8.7369 1 48678 48678 0.79363 0 1 397850 + 54948 20780 36999 37822 63796 63796 0.053844763507186144 RRRQRRRRERD 11 Unmodified _RRRQRRRRERD_ 0 0 0 ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 820.482421875 2 820.48106 1638.94757 NaN NaN NaN NaN NaN NaN NaN 104.1 1 104.05 103.55 104.55 -0.048737 0 0 0 0.9435 1 57801 57801 0 0 1 54949 13539 37000 37823 63797 63797 0.15365067008679034 RRRQSRSTPR 10 Unmodified _RRRQSRSTPR_ 0 0 0 ENST00000521244.1_1_1:178511933-178514557:+|nuORF;ENST00000367638.1_1_1:178514055-178514557:+|nuORF ENST00000521244.1_1_1:178511933-178514557:+|nuORF ENST00000521244.1_1_1:178511933-178514557:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.25732421875 3 433.920342 1298.7392 1.6878 0.00073238 2.7875 0.0012095 4.4753 0.0019419 434.25561274679893 104.58 0.14844 98.408 98.348 98.497 -6.1757 9 7 2 0 0 0 0.71981 1 70040 70040 0.69767 0.07084 1 7337800 54950 12247 37001 37824 63798 63798 0.10177645371754807 RRRRARRRRKK 11 Unmodified _RRRRARRRRKK_ 0 0 0 ENST00000585362.6_3_19:1104424-1105401:+|nuORF ENST00000585362.6_3_19:1104424-1105401:+|nuORF ENST00000585362.6_3_19:1104424-1105401:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.3571166992188 3 532.356107 1594.04649 NaN NaN NaN NaN NaN NaN NaN 107.28 1 101.11 100.61 101.61 -6.1757 0 0 0 0.9435 1 71765 71765 0 0 1 54951 15606 37002 37825 63799 63799 0.27323134764196766 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 825.4695434570312 2 825.469629 1648.92471 -0.3801 -0.00031376 0.77034 0.00063589 0.39024 0.00032213 825.4704256102921 70.997 0.25203 70.997 70.935 71.187 0 16 10 2 0 0 0 0.7453 1 39555 39555 0 0 1 472780 + 54952 27849 37003 37826 63800 63800 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 825.4695434570312 2 825.469629 1648.92471 NaN NaN NaN NaN NaN NaN NaN 71.59 1 71.59 71.09 72.09 0 0 0 0 0.9435 1 39874 39874 0 0 1 + 54953 27849 37003 37826 63801 63801 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.4702758789062 2 825.469629 1648.92471 NaN NaN NaN NaN NaN NaN NaN 71.542 1 71.065 70.565 71.565 -0.47707 0 0 0 0.94301 1 39154 39154 0.35063 0.35063 1 + 54954 27849 37003 37826 63802 63802 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.470947265625 2 825.469629 1648.92471 NaN NaN NaN NaN NaN NaN NaN 72.132 1 71.656 71.156 72.156 -0.47609 0 0 0 0.9435 1 39473 39473 0 0 1 + 54955 27849 37003 37826 63803 63803 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.468994140625 2 825.469629 1648.92471 1.4224 0.0011742 -1.0641 -0.00087841 0.35829 0.00029576 825.9704160213461 70.97 0.44259 71.005 70.855 71.298 0.035507 37 19 3 0 0 0 0.74157 1 39067 39067 0.35063 0.043601 1 4541000 + 54956 27849 37003 37826 63804 63804 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.4724731445312 2 825.469629 1648.92471 1.3232 0.0010923 1.6497 0.0013618 2.973 0.0024541 825.4708511076534 71.181 0.23526 71.22 71.109 71.344 0.039024 17 9 2 0 0 0 0.74157 1 39180 39180 0.35063 0.35063 1 2921200 + 54957 27849 37003 37826 63805 63805 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 825.4724731445312 2 825.469629 1648.92471 1.4224 0.0011742 -1.0641 -0.00087841 0.35829 0.00029576 825.9704160213461 70.97 0.44259 71.005 70.855 71.298 0.035507 37 19 3 0 0 0 0.30598 1 39180 39180 0.35063 0.35063 1 4541000 + 54958 27849 37003 37826 63806 63806 0.12620047891186914 RRRRFDRERRF 11 Unmodified _RRRRFDRERRF_ 0 0 0 REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF REV__ENST00000488868.1_1_1:28559432-28559522:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 825.469629 1648.92471 -0.3801 -0.00031376 0.77034 0.00063589 0.39024 0.00032213 825.4704256102921 70.997 0.25203 70.997 70.935 71.187 0 -0.0039713 0.0016585 NaN 0.35063 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 472780 + 54959 27849 37003 37826 0.12620047891186914 RRRRGAGA 8 Unmodified _RRRRGAGA_ 0 0 0 ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2740478515625 2 450.273358 898.532164 0.39707 0.00017879 1.105 0.00049755 1.5021 0.00067634 450.2741926097056 97.282 0.58018 97.282 96.972 97.552 0 72 28 3 0 0 0 0.81107 1 53632 53632 0 0 1 3947900 54960 11918 37004 37827 63807 63807 0.07883902614230465 RRRRGAGA 8 Unmodified _RRRRGAGA_ 0 0 0 ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2745361328125 2 450.273358 898.532164 2.0316 0.00091478 1.0217 0.00046003 3.0533 0.0013748 450.27365079859646 82.065 1.4951 82.127 81.834 83.329 0.062004 156 58 5 0 0 0 0.81107 4 45279 45279;45381;45498;45603 0 0 1 616100000 54961 11918 37004 37827 63808;63809;63810;63811 63808 0.07883902614230465 RRRRGAGA 8 Unmodified _RRRRGAGA_ 0 0 0 ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF ENST00000336985.10_2_22:45098108-45098258:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 450.273358 898.532164 0.2772 0.00012482 0.93589 0.0004214 1.2131 0.00054622 450.27402573065444 97.816 0.7915 97.573 97.099 97.89 -0.24277 0.14595 -6.5878E-05 NaN 0 96 35 3 NaN NaN NaN NaN 0 NaN NaN 0 13582000 54962 11918 37004 37827 0.07883902614230465 RRRRHKKP 8 Unmodified _RRRRHKKP_ 0 0 0 ENSG00000166343|ENST00000299432|MSS51 ENSG00000166343|ENST00000299432|MSS51 ENSG00000166343|ENST00000299432|MSS51 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.865478515625 2 567.365582 1132.71661 1.7181 0.00097477 0.022467 1.2747E-05 1.7405 0.00098752 567.365744952012 106.9 1.0548 100.73 99.937 100.99 -6.1757 265 184 2 0 0 0 8.7369 1 71136 71136 0 0 1 6899700 54963 7475 37005 37828 63812 63812 0.1555609076476685 RRRRKEKRKYH 11 Unmodified _RRRRKEKRKYH_ 0 0 0 REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF REV__ENST00000480732.2_1_1:78407858-78408185:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.1460571289062 2 806.990198 1611.96584 NaN NaN NaN NaN NaN NaN NaN 73.817 1 73.861 73.361 74.361 0.043983 0 0 0 0.94337 1 40683 40683 0.35063 0.35063 1 + 54964 27678 37006 37829 63813 63813 0.18433808930672058 RRRRKGRQRPI 11 Unmodified _RRRRKGRQRPI_ 0 0 0 ENST00000308664.10_1_12:110719006-110719138:+|nuORF ENST00000308664.10_1_12:110719006-110719138:+|nuORF ENST00000308664.10_1_12:110719006-110719138:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.4901428222656 4 370.489542 1477.92906 0.43914 0.0001627 0.49833 0.00018463 0.93747 0.00034732 370.4896866999759 38.692 0.32378 38.692 38.556 38.88 0 25 14 2 0 0 0 0.7453 1 20703 20703 0 0 1 1786300 54965 11657 37007 37830 63814 63814 0.20921557104793465 RRRRKKISYRK 11 Unmodified _RRRRKKISYRK_ 0 0 0 ENST00000395183.6_1_4:86699881-86700061:+|nuORF ENST00000395183.6_1_4:86699881-86700061:+|nuORF ENST00000395183.6_1_4:86699881-86700061:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.3367919921875 3 516.334086 1545.98043 NaN NaN NaN NaN NaN NaN NaN 109.46 1 103.28 102.78 103.78 -6.1757 0 0 0 0.9435 1 73101 73101 0 0 1 54966 12763 37008 37831 63815 63815 0.22927881078817336 RRRRKKKRQRL 11 Unmodified _RRRRKKKRQRL_ 0 0 0 ENST00000361428.2_3_6:43308074-43308122:-|nuORF ENST00000361428.2_3_6:43308074-43308122:-|nuORF ENST00000361428.2_3_6:43308074-43308122:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 791.0297241210938 2 791.029657 1580.04476 NaN NaN NaN NaN NaN NaN NaN 92.187 1 91.707 91.207 92.207 -0.48092 0 0 0 0.9435 1 50391 50391 0 0 1 54967 12185 37009 37832 63816 63816 0.27794080955618483 RRRRKQRPPRL 11 Unmodified _RRRRKQRPPRL_ 0 0 0 ENSG00000004975|ENST00000005340|DVL2;ENST00000572285.5_1_17:7132813-7133230:-|nuORF;ENST00000574642.5_1_17:7132550-7133686:-|nuORF ENSG00000004975|ENST00000005340|DVL2 ENSG00000004975|ENST00000005340|DVL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 759.9879150390625 2 759.987458 1517.96036 NaN NaN NaN NaN NaN NaN NaN 104.12 1 104.07 103.57 104.57 -0.048737 0 0 0 0.9435 1 57812 57812 0 0 1 54968 292 37010 37833 63817 63817 0.2221013013886477 RRRRKRMRWSW 11 Unmodified _RRRRKRMRWSW_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4802856445312 2 837.478943 1672.94333 NaN NaN NaN NaN NaN NaN NaN 58.847 1 58.847 58.347 59.347 0 0 0 0 0.9435 1 32774 32774 0 0 1 + 54969 27819 37011 37834 63818 63818 0.13377886261423555 RRRRKRMRWSW 11 Unmodified _RRRRKRMRWSW_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.4826049804688 2 837.478943 1672.94333 NaN NaN NaN NaN NaN NaN NaN 59.408 1 58.917 58.417 59.417 -0.49079 0 0 0 0.9435 1 32320 32320 0 0 1 + 54970 27819 37011 37834 63819 63819 0.13377886261423555 RRRRKRMRWSW 11 Unmodified _RRRRKRMRWSW_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 837.4822387695312 2 837.478943 1672.94333 NaN NaN NaN NaN NaN NaN NaN 66.351 1 60.175 59.675 60.675 -6.1757 0 0 0 0.9435 1 43149 43149 0 0 1 + 54971 27819 37011 37834 63820 63820 0.13377886261423555 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4833679199219 4 359.482989 1433.90285 0.15121 5.4359E-05 0.086849 3.1221E-05 0.23806 8.558E-05 359.4829405682029 37.341 0.87246 37.341 36.732 37.604 0 117 44 4 0 0 0 0.72607 3 19571 19571;19784;19896 0 0 1 4136900 + 54972 29498 37012 37835 63821;63822;63823 63821 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4834899902344 4 359.482989 1433.90285 0.031889 1.1464E-05 0.032819 1.1798E-05 0.064708 2.3261E-05 359.4831634929003 40.039 0.39145 40.039 39.74 40.131 0 28 19 3 0 0 0 0.72607 1 21423 21423 0 0 1 1685500 + 54973 29498 37012 37835 63824 63824 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.7339477539062 4 359.482989 1433.90285 0.15121 5.4359E-05 0.086849 3.1221E-05 0.23806 8.558E-05 359.4829405682029 37.341 0.87246 37.341 36.732 37.604 0 117 44 4 0 0 0 0.24012 1 19784 19784 0 0 1 4136900 + 54974 29498 37012 37835 63825 63825 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 4 359.482989 1433.90285 0.031889 1.1464E-05 0.032819 1.1798E-05 0.064708 2.3261E-05 359.4831634929003 40.039 0.39145 40.039 39.74 40.131 0 -0.04362 -0.00014066 NaN 0 28 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1685500 + 54975 29498 37012 37835 0.2032528793331494 RRRRKRRHIT 10 Unmodified _RRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 359.482989 1433.90285 0.29858 0.00010734 0.2513 9.0338E-05 0.54988 0.00019767 359.4831070402386 40.121 0.14639 40.126 40.088 40.234 0.0050545 0.04362 0.0001735 NaN 0 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1729000 + 54976 29498 37012 37835 0.2032528793331494 RRRRLALF 8 Unmodified _RRRRLALF_ 0 0 0 nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3527221679688 2 544.351609 1086.68866 1.4675 0.00079885 -0.23599 -0.00012846 1.2315 0.00067039 544.351082150786 105.14 0.28121 98.969 98.816 99.098 -6.1757 222 51 6 0 0 0 0.81107 2 70337 70337;70485 0 0 1 19656000000 54977 16445 37013 37836 63826;63827 63826 0.14878767784671254 RRRRLQRRR 9 Unmodified _RRRRLQRRR_ 0 0 0 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 ENSG00000215612|ENST00000400677|HMX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 676.9374389648438 2 676.937768 1351.86098 -0.37737 -0.00025545 -0.11688 -7.9118E-05 -0.49424 -0.00033457 677.4380582263 103.49 0.11098 103.44 103.38 103.49 -0.047928 6 4 2 0 0 0 0.2191 1 57494 57494 0 0 1 758000 54978 10534 37014 37837 63828 63828 0.19912732244733888 RRRRLWLKE 9 Unmodified _RRRRLWLKE_ 0 0 0 ENST00000606621.1_1_6:85472779-85472989:-|nuORF ENST00000606621.1_1_6:85472779-85472989:-|nuORF ENST00000606621.1_1_6:85472779-85472989:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2732543945312 3 438.273945 1311.80001 0.99091 0.00043429 -1.623 -0.00071134 -0.63213 -0.00027705 438.27296330759526 101.46 0.16211 95.285 95.211 95.373 -6.1757 19 7 3 0 0 0 0.61903 1 68081 68081 0.20686 0 1 44453000 54979 15851 37015 37838 63829 63829 0.15657782421953925 RRRRLWRWWWK 11 Unmodified _RRRRLWRWWWK_ 0 0 0 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 MSMS AL20221201_MKP_PDAC_01 4 595.67724609375 3 595.678076 1784.0124 NaN NaN NaN NaN NaN NaN NaN 7.4371 1 4.9551 4.4551 5.4551 -2.482 0 0 0 0.9435 1 3753 3753 0 0 1 54980 81 37016 37839 63830 63830 0.15175293552601943 RRRRMKMKKKK 11 Unmodified _RRRRMKMKKKK_ 0 0 0 REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF REV__ENST00000559471.5_1_15:49284721-49284799:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 773.4926147460938 2 773.492673 1544.97079 NaN NaN NaN NaN NaN NaN NaN 85.075 1 78.9 78.4 79.4 -6.1757 0 0 0 0.9435 1 56007 56007 0 0 1 + 54981 28816 37017 37840 63831 63831 0.2201065347740041 RRRRPHRPLWG 11 Unmodified _RRRRPHRPLWG_ 0 0 0 ENST00000261721.8_1_15:83735740-83736061:-|nuORF ENST00000261721.8_1_15:83735740-83736061:-|nuORF ENST00000261721.8_1_15:83735740-83736061:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.9403686523438 2 743.939976 1485.8654 NaN NaN NaN NaN NaN NaN NaN 108.52 1 108.48 107.98 108.98 -0.047607 0 0 0 0.9435 1 60100 60100 0 0 1 54982 11250 37018 37841 63832 63832 0.14190196667686905 RRRRPLWAWCL 11 Unmodified _RRRRPLWAWCL_ 0 0 0 REV__ENSG00000179938|ENST00000567927|GOLGA8J;REV__ENSG00000261247|ENST00000569052|GOLGA8T REV__ENSG00000179938|ENST00000567927|GOLGA8J MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.9277954101562 2 756.927689 1511.84082 NaN NaN NaN NaN NaN NaN NaN 94.94 1 94.94 94.44 95.44 0 0 0 0 0.9435 1 52482 52482 0 0 1 + 54983 23129;24582 37019 37842 63833 63833 0.10537800469955982 RRRRPRRRRPR 11 Unmodified _RRRRPRRRRPR_ 0 0 0 ENST00000557385.1_1_X:119384635-119386530:+|nuORF;ENST00000326624.2_1_X:119384635-119387278:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF ENST00000557385.1_1_X:119384635-119386530:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 809.5169067382812 2 809.520322 1617.02609 NaN NaN NaN NaN NaN NaN NaN 98.178 1 97.985 97.485 98.485 -0.19321 0 0 0 0.9435 1 53621 53621 0 0 1 54984 11820 37020 37843 63834 63834 0.2422596410440292 RRRRPRRRRRV 11 Unmodified _RRRRPRRRRRV_ 0 0 0 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 ENSG00000185163|ENST00000397333|DDX51 MSMS AL20221201_MKP_PDAC_01 4 810.5250854492188 2 810.528147 1619.04174 NaN NaN NaN NaN NaN NaN NaN 104.95 1 98.77 98.27 99.27 -6.1757 0 0 0 0.9435 1 70255 70255 0 0 1 54985 9340 37021 37844 63835 63835 0.2569825062143991 RRRRPRRRVP 10 Unmodified _RRRRPRRRVP_ 0 0 0 REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF REV__ENST00000358344.7_1_5:177631560-177631635:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.9805297851562 4 351.980347 1403.89228 -0.221 -7.7788E-05 0.1945 6.8461E-05 -0.026498 -9.3267E-06 352.2311698805267 45.189 0.34893 45.189 44.996 45.345 0 29 17 2 0 0 0 0.72482 1 24562 24562 0.13989 0.056541 1 7351700 + 54986 25874 37022 37845 63836 63836 0.20649305278834618 RRRRQQQQYRH 11 Unmodified _RRRRQQQQYRH_ 0 0 0 REV__ENSG00000074855|ENST00000159087|ANO8 REV__ENSG00000074855|ENST00000159087|ANO8 MSMS AL20221201_MKP_PDAC_01 4 806.4450073242188 2 806.443612 1610.87267 NaN NaN NaN NaN NaN NaN NaN 76.246 1 70.071 69.571 70.571 -6.1757 0 0 0 0.94301 1 49875 49875 0.35063 0 1 + 54987 17560 37023 37846 63837 63837 0.09166884477440362 RRRRRDWFWRA 11 Unmodified _RRRRRDWFWRA_ 0 0 0 ENST00000361972.8_1_10:7212945-7217999:-|nuORF ENST00000361972.8_1_10:7212945-7217999:-|nuORF ENST00000361972.8_1_10:7212945-7217999:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 830.9645385742188 2 830.96144 1659.90833 NaN NaN NaN NaN NaN NaN NaN 83.759 1 83.259 82.759 83.759 -0.49961 0 0 0 0.9435 1 45844 45844 0 0 1 54988 12198 37024 37847 63838 63838 0.1047696672510483 RRRRRFLIHKF 11 Unmodified _RRRRRFLIHKF_ 0 0 0 REV__ENSG00000184160|ENST00000330055|ADRA2C REV__ENSG00000184160|ENST00000330055|ADRA2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 792.9913330078125 2 792.994752 1583.97495 NaN NaN NaN NaN NaN NaN NaN 87.029 1 87.088 86.588 87.588 0.05822 0 0 0 0.94307 1 48360 48360 0.30703 0.30703 1 + 54989 23400 37025 37848 63839 63839 0.2063220228699265 RRRRRKIEIE 10 Unmodified _RRRRRKIEIE_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.296875 3 471.295409 1410.8644 1.5059 0.00070974 2.3754 0.0011195 3.8814 0.0018293 471.2961740925321 104.57 0.089676 98.397 98.348 98.438 -6.1757 8 4 3 0 0 0 0.72247 1 70031 70031 0.13989 0.04505 1 13380000 54990 8091 37026 37849 63840 63840 0.17539937508126968 RRRRRKKIA 9 Unmodified _RRRRRKKIA_ 0 0 0 REV__ENSG00000164626|ENST00000359534|KCNK5 REV__ENSG00000164626|ENST00000359534|KCNK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.4228515625 2 620.420888 1238.82722 NaN NaN NaN NaN NaN NaN NaN 89.465 1 88.963 88.463 89.463 -0.50171 0 0 0 0.8622 1 48914 48914 0 0 1 + 54991 21933 37027 37850 63841 63841 0.21736310753044563 RRRRRKKIA 9 Unmodified _RRRRRKKIA_ 0 0 0 REV__ENSG00000164626|ENST00000359534|KCNK5 REV__ENSG00000164626|ENST00000359534|KCNK5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.4210205078125 2 620.420888 1238.82722 NaN NaN NaN NaN NaN NaN NaN 89.762 1 89.26 88.76 89.76 -0.50171 0 0 0 0.8622 1 49072 49072 0 0 1 + 54992 21933 37027 37850 63842 63842 0.21736310753044563 RRRRRKKWWQW 11 Unmodified _RRRRRKKWWQW_ 0 0 0 REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF REV__ENST00000324344.8_1_16:20911624-20911678:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 871.51123046875 2 871.508558 1741.00256 NaN NaN NaN NaN NaN NaN NaN 89.963 1 83.787 83.287 84.287 -6.1757 0 0 0 0.9435 1 59393 59393 0 0 1 + 54993 25534 37028 37851 63843 63843 0.16170105547257663 RRRRRKRRHIT 11 Unmodified _RRRRRKRRHIT_ 0 0 0 REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL REV__nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20221201_MKP_PDAC_01 4 531.0122680664062 3 531.008596 1590.00396 NaN NaN NaN NaN NaN NaN NaN 109 1 102.82 102.32 103.32 -6.1757 0 0 0 0.9435 1 72819 72819 0 0 1 + 54994 29498 37029 37852 63844 63844 0.2325573963601073 RRRRRLALF 9 Unmodified _RRRRRLALF_ 0 0 0 nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B nc|ENSG00000183260|Q9H3Z7|ABHD16B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.4010620117188 2 622.402164 1242.78978 NaN NaN NaN NaN NaN NaN NaN 70.701 1 70.224 69.724 70.724 -0.47735 0 0 0 0.85737 1 38682 38682 0.6015 0.14316 1 54995 16445 37030 37853 63845 63845 0.17809219487389782 RRRRRLRRRPR 11 Unmodified _RRRRRLRRRPR_ 0 0 0 ENSG00000183579|ENST00000544604|ZNRF3 ENSG00000183579|ENST00000544604|ZNRF3 ENSG00000183579|ENST00000544604|ZNRF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 817.5365600585938 2 817.535972 1633.05739 NaN NaN NaN NaN NaN NaN NaN 88.358 1 88.412 87.912 88.912 0.053352 0 0 0 0.9435 1 49156 49156 0 0 1 54996 9163 37031 37854 63846 63846 0.26618537138506326 RRRRRLWRWW 10 Unmodified _RRRRRLWRWW_ 0 0 0 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2;chr12:54283225-54283827|179|33.04|0.0|21.66|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.9772338867188 2 813.976893 1625.93923 NaN NaN NaN NaN NaN NaN NaN 86.363 1 86.422 85.922 86.922 0.05822 0 0 0 1.0061 1 47941 47941 0 0 1 54997 81 37032 37855 63847 63847 0.1513016482999774 RRRRRPWARRW 11 Unmodified _RRRRRPWARRW_ 0 0 0 REV__ENSG00000117791|ENST00000366913|MTARC2 REV__ENSG00000117791|ENST00000366913|MTARC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.4930419921875 2 826.490699 1650.96685 NaN NaN NaN NaN NaN NaN NaN 84.16 1 84.224 83.724 84.724 0.063171 0 0 0 0.9435 1 46564 46564 0 0 1 + 54998 19124 37033 37856 63848 63848 0.16740068090234672 RRRRRRDGF 9 Unmodified _RRRRRRDGF_ 0 0 0 nc|ENSG00000108443|P23443-5|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1;nc|ENSG00000108443|P23443-4|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.2811889648438 2 637.874302 1273.73405 NaN NaN NaN NaN NaN NaN NaN 81.819 1 81.324 80.824 81.824 -0.4952 0 0 0 0.84369 1 44800 44800 2.3027 0.4585 1 54999 2570 37034 37857 63849 63849 0.10813386299787453 RRRRRRGP 8 Unmodified _RRRRRRGP_ 0 0 0 ENSG00000248767|ENST00000506382|FOXL3 REV__ENST00000412341.6_1_1:249150017-249153213:-|nuORF;REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3546752929688 2 555.353006 1108.69146 1.7213 0.00095593 0.18781 0.0001043 1.9091 0.0010602 555.3529933888404 92.502 0.46867 92.532 92.336 92.805 0.030197 42 17 3 0 0 0 0.81107 1 51514 51514 0 0 1 25573000 55000 28483;26722 37035 37858 63850 63850 0.14146035962221504 RRRRRRHRRCR 11 Unmodified _RRRRRRHRRCR_ 0 0 0 ENSG00000184560|ENST00000333870|SPEM2 ENSG00000184560|ENST00000333870|SPEM2 ENSG00000184560|ENST00000333870|SPEM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 832.5038452148438 2 832.501607 1662.98866 NaN NaN NaN NaN NaN NaN NaN 108.44 1 108.35 107.85 108.85 -0.087784 0 0 0 0.9435 1 58913 58913 0 0 1 55001 9269 37036 37859 63851 63851 0.1836854956713978 RRRRRRHRRRE 11 Unmodified _RRRRRRHRRRE_ 0 0 0 REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 845.51513671875 2 845.518311 1689.02207 NaN NaN NaN NaN NaN NaN NaN 91.723 1 85.547 85.047 86.047 -6.1757 0 0 0 0.9435 1 60635 60635 0 0 1 + 55002 26822 37037 37860 63852 63852 0.20511874610679115 RRRRRRLFFR 10 Unmodified _RRRRRRLFFR_ 0 0 0 ENST00000550735.6_1_12:112280040-112280175:+|nuORF ENST00000550735.6_1_12:112280040-112280175:+|nuORF ENST00000550735.6_1_12:112280040-112280175:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 759.9766845703125 2 759.976893 1517.93923 NaN NaN NaN NaN NaN NaN NaN 87.117 1 87.117 86.617 87.617 0 0 0 0 1.0061 1 48246 48246 0 0 1 55003 15167 37038 37861 63853 63853 0.20098164829983034 RRRRRRLRRLL 11 Unmodified _RRRRRRLRRLL_ 0 0 0 REV__ENST00000532004.5_1_11:810000-812833:+|nuORF REV__ENST00000532004.5_1_11:810000-812833:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.0447387695312 2 804.043099 1606.07164 NaN NaN NaN NaN NaN NaN NaN 107.3 1 107.25 106.75 107.75 -0.047607 0 0 0 0.9435 1 59452 59452 0 0 1 + 55004 28453 37039 37862 63854 63854 0.2928518956680364 RRRRRRPVAKA 11 Unmodified _RRRRRRPVAKA_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MSMS AL20221201_MKP_PDAC_01 4 474.6446228027344 3 474.643143 1420.9076 NaN NaN NaN NaN NaN NaN NaN 103.93 1 97.758 97.258 98.258 -6.1757 0 0 0 0.94338 1 69641 69641 0.08335 0 1 55005 16039 37040 37863 63855 63855 0.21398172076055744 RRRRRRQQRRC 11 Unmodified _RRRRRRQQRRC_ 0 0 0 ENST00000397992.5_1_16:72984846-73092758:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.980712890625 2 813.980173 1625.94579 NaN NaN NaN NaN NaN NaN NaN 88.698 1 88.746 88.246 89.246 0.047852 0 0 0 0.9435 1 49349 49349 0 0 1 55006 12838 37041 37864 63856 63856 0.15785734719065658 RRRRRRRHYHH 11 Unmodified _RRRRRRRHYHH_ 0 0 0 ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF ENST00000337565.9_1_2:111878510-111881339:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.4878540039062 2 843.486479 1684.95841 NaN NaN NaN NaN NaN NaN NaN 94.57 1 94.584 94.084 95.084 0.014244 0 0 0 0.9435 1 52553 52553 0 0 1 55007 11930 37042 37865 63857 63857 0.1433251417363408 RRRRRRRKQRK 11 Unmodified _RRRRRRRKQRK_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20221201_MKP_PDAC_01 4 826.5428466796875 2 826.541255 1651.06796 NaN NaN NaN NaN NaN NaN NaN 105.61 1 99.434 98.934 99.934 -6.1757 0 0 0 0.9435 1 70751 70751 0 0 1 55008 9229 37043 37866 63858 63858 0.26846519792934487 RRRRRRRKRMR 11 Unmodified _RRRRRRRKRMR_ 0 0 0 REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.0319213867188 2 842.035282 1682.05601 NaN NaN NaN NaN NaN NaN NaN 84.979 1 84.979 84.479 85.479 0 0 0 0 0.9435 1 47101 47101 0 0 1 + 55009 27819 37044 37867 63859 63859 0.24226579778087398 RRRRRRRMRRR 11 Unmodified _RRRRRRRMRRR_ 0 0 0 nc|ENSG00000182872|P0DW28|RBM10 nc|ENSG00000182872|P0DW28|RBM10 nc|ENSG00000182872|P0DW28|RBM10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 856.0419311523438 2 856.038356 1710.06216 NaN NaN NaN NaN NaN NaN NaN 87.258 1 87.316 86.816 87.816 0.05822 0 0 0 0.9435 1 48504 48504 0 0 1 55010 16440 37045 37868 63860 63860 0.23553098009620044 RRRRRRRPFLF 11 Unmodified _RRRRRRRPFLF_ 0 0 0 REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF REV__ENST00000222747.7_1_7:120497939-120498116:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 808.505126953125 2 808.503275 1614.992 NaN NaN NaN NaN NaN NaN NaN 107.56 1 101.38 100.88 101.88 -6.1757 0 0 0 0.9435 1 71930 71930 0 0 1 + 55011 24765 37046 37869 63861 63861 0.20910122892814798 RRRRRRRPLWR 11 Unmodified _RRRRRRRPLWR_ 0 0 0 ENSG00000171873|ENST00000379453|ADRA1D ENSG00000171873|ENST00000379453|ADRA1D ENSG00000171873|ENST00000379453|ADRA1D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.5281372070312 2 832.525073 1663.03559 NaN NaN NaN NaN NaN NaN NaN 13.113 1 13.123 12.623 13.623 0.0096512 0 0 0 0.9435 1 6464 6464 0 0 1 55012 8155 37047 37870 63862 63862 0.23059732389947385 RRRRRRRPRRS 11 Unmodified _RRRRRRRPRRS_ 0 0 0 REV__ENST00000514738.5_1_5:31193871-31267519:+|nuORF REV__ENST00000514738.5_1_5:31193871-31267519:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.5128784179688 2 804.509955 1607.00536 NaN NaN NaN NaN NaN NaN NaN 103.16 1 103.11 102.61 103.61 -0.047928 0 0 0 0.9435 1 57289 57289 0 0 1 + 55013 28199 37048 37871 63863 63863 0.2261337372476646 RRRRRRRRAP 10 Unmodified _RRRRRRRRAP_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.48291015625 4 359.734609 1434.90933 -0.29941 -0.00010771 -1.5109 -0.00054353 -1.8103 -0.00065124 359.73389990196415 37 0.2487 37.021 36.881 37.13 0.021545 18 11 2 0 0 0 0.24011 1 19639 19639 0.15932 0.064481 1 1292400 55014 11156 37049 37872 63864 63864 0.209272258846795 RRRRRRRRLFF 11 Unmodified _RRRRRRRRLFF_ 0 0 0 ENST00000550735.6_1_12:112280040-112280175:+|nuORF ENST00000550735.6_1_12:112280040-112280175:+|nuORF ENST00000550735.6_1_12:112280040-112280175:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.0211181640625 3 559.020725 1674.04034 NaN NaN NaN NaN NaN NaN NaN 44.219 1 39.367 38.867 39.867 -4.852 0 0 0 0.94337 1 26969 26969 0.094841 0.094841 1 55015 15167 37050 37873 63865 63865 0.23028616532701562 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.5304565429688 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 65.025 1 65.025 64.525 65.525 0 0 0 0 0.9435 1 36274 36274 0 0 1 + 55016 26551 37051 37874 63866 63866 0.26047715044387587 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 811.532470703125 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 107.7 1 101.52 101.02 102.02 -6.1757 0 0 0 0.9435 1 72017 72017 0 0 1 + 55017 26551 37051 37874 63867 63867 0.26047715044387587 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 811.5341796875 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 107.93 1 101.75 101.25 102.25 -6.1757 0 0 0 0.9435 1 72156 72156 0 0 1 + 55018 26551 37051 37874 63868 63868 0.26047715044387587 RRRRRRRRLQL 11 Unmodified _RRRRRRRRLQL_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 811.5305786132812 2 811.530356 1621.04616 NaN NaN NaN NaN NaN NaN NaN 109.53 1 103.36 102.86 103.86 -6.1757 0 0 0 0.9435 1 73147 73147 0 0 1 + 55019 26551 37051 37874 63869 63869 0.26047715044387587 RRRRRRRRRHS 11 Unmodified _RRRRRRRRRHS_ 0 0 0 ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF ENST00000356978.8_1_14:90863393-90866410:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 824.5133666992188 2 824.513029 1647.0115 NaN NaN NaN NaN NaN NaN NaN 61.107 1 54.959 54.459 55.459 -6.1478 0 0 0 0.9435 1 39342 39342 0 0 1 55020 12104 37052 37875 63870 63870 0.21387891956283056 RRRRRRRRRKQ 11 Unmodified _RRRRRRRRRKQ_ 0 0 0 ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 ENSG00000184205|ENST00000375442|TSPYL2 MSMS AL20221201_MKP_PDAC_01 4 840.5447998046875 2 840.544329 1679.0741 NaN NaN NaN NaN NaN NaN NaN 103.39 1 97.213 96.713 97.713 -6.1757 0 0 0 0.9435 1 69321 69321 0 0 1 55021 9229 37053 37876 63871 63871 0.2617303802446713 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 826.0392456054688 2 826.036671 1650.05879 NaN NaN NaN NaN NaN NaN NaN 104.21 1 98.039 97.539 98.539 -6.1757 0 0 0 0.9435 1 69807 69807 0 0 1 55022 11156;24894 37054 37877 63872 63872 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 826.0379638671875 2 826.036671 1650.05879 NaN NaN NaN NaN NaN NaN NaN 104.87 1 98.694 98.194 99.194 -6.1757 0 0 0 0.9435 1 70198 70198 0 0 1 55023 11156;24894 37054 37877 63873 63873 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.02783203125 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 107.14 1 100.96 100.46 101.46 -6.1757 0 0 0 0.9435 1 71678 71678 0 0 1 55024 11156;24894 37054 37877 63874 63874 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 550.6940307617188 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 107.33 1 101.15 100.65 101.65 -6.1757 0 0 0 0.9435 1 71792 71792 0 0 1 55025 11156;24894 37054 37877 63875 63875 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.0277099609375 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 108.27 1 102.1 101.6 102.6 -6.1757 0 0 0 0.9435 1 72371 72371 0 0 1 55026 11156;24894 37054 37877 63876 63876 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.0277099609375 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 108.79 1 102.61 102.11 103.11 -6.1757 0 0 0 0.9435 1 72689 72689 0 0 1 55027 11156;24894 37054 37877 63877 63877 0.25976171227262057 RRRRRRRRRRA 11 Unmodified _RRRRRRRRRRA_ 0 0 0 ENST00000253008.2_1_9:133556683-133557598:+|nuORF REV__ENST00000253008.2_1_9:133556683-133557598:+|nuORF;ENST00000253008.2_1_9:133556683-133557598:+|nuORF ENST00000253008.2_1_9:133556683-133557598:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.0282592773438 3 551.026873 1650.05879 NaN NaN NaN NaN NaN NaN NaN 108.97 1 102.79 102.29 103.29 -6.1757 0 0 0 0.9435 1 72797 72797 0 0 1 55028 11156;24894 37054 37877 63878 63878 0.25976171227262057 RRRRRRRRRRD 11 Unmodified _RRRRRRRRRRD_ 0 0 0 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 ENSG00000185052|ENST00000328041|SLC24A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.0341186523438 2 848.031585 1694.04862 NaN NaN NaN NaN NaN NaN NaN 67.384 1 67.384 66.884 67.884 0 0 0 0 0.9435 1 37576 37576 0 0 1 55029 9326 37055 37878 63879 63879 0.22935563502028344 RRRRRRRRRRG 11 Unmodified _RRRRRRRRRRG_ 0 0 0 REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF;REV__ENST00000377044.8_2_9:74383426-74383705:-|nuORF;REV__ENSG00000177679|ENST00000611745|SRRM3 REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 819.0269165039062 2 819.028846 1636.04314 NaN NaN NaN NaN NaN NaN NaN 97.995 1 97.976 97.476 98.476 -0.018188 0 0 0 0.9435 1 54441 54441 0 0 1 + 55030 28760;24708;22997 37056 37879 63880 63880 0.2505588471021838 RRRRRRRRRRK 11 Unmodified _RRRRRRRRRRK_ 0 0 0 ENSG00000229674|ENST00000448797|H2AL3 ENSG00000229674|ENST00000448797|H2AL3 ENSG00000229674|ENST00000448797|H2AL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.5660400390625 2 854.565595 1707.11664 NaN NaN NaN NaN NaN NaN NaN 85.49 1 85.552 85.052 86.052 0.061638 0 0 0 0.9435 1 47324 47324 0 0 1 55031 10607 37057 37880 63881 63881 0.2913643315268928 RRRRRRRRRRL 11 Unmodified _RRRRRRRRRRL_ 0 0 0 ENST00000373930.3_1_9:123476433-123476640:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF;REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF;ENST00000373930.3_1_9:123476433-123476640:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 847.0609130859375 2 847.060146 1692.10574 NaN NaN NaN NaN NaN NaN NaN 90.234 1 90.276 89.776 90.776 0.042175 0 0 0 0.9435 1 50195 50195 0 0 1 55032 26551;26166;12429 37058 37881 63882 63882 0.2873703077841583 RRRRRRRRRRP 11 Unmodified _RRRRRRRRRRP_ 0 0 0 ENST00000497336.1_1_X:48316945-48325440:-|nuORF ENST00000497336.1_1_X:48316945-48325440:-|nuORF ENST00000497336.1_1_X:48316945-48325440:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.044677734375 2 839.044496 1676.07444 NaN NaN NaN NaN NaN NaN NaN 96.461 1 96.461 95.961 96.961 0 0 0 0 0.9435 1 53307 53307 0 0 1 55033 14397 37059 37882 63883 63883 0.2634445774431242 RRRRRRRRTEL 11 Unmodified _RRRRRRRRTEL_ 0 0 0 ENST00000396212.6_1_16:19535261-19535342:+|nuORF ENST00000396212.6_1_16:19535261-19535342:+|nuORF ENST00000396212.6_1_16:19535261-19535342:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.0049438476562 2 806.004171 1609.99379 NaN NaN NaN NaN NaN NaN NaN 96.02 1 96.025 95.525 96.525 0.004158 0 0 0 0.9435 1 53337 53337 0 0 1 55034 12789 37060 37883 63884 63884 0.21319131910786382 RRRRRRWHWHW 11 Unmodified _RRRRRRWHWHW_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.49755859375 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 54.248 1 54.248 53.748 54.748 0 0 0 0 0.9435 1 30107 30107 0 0 1 55035 11772 37061 37884 63885 63885 0.11098586321782022 RRRRRRWHWHW 11 Unmodified _RRRRRRWHWHW_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.4951782226562 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 24.377 1 24.376 23.876 24.876 -0.0016766 0 0 0 0.9435 1 12456 12456 0 0 1 55036 11772 37061 37884 63886 63886 0.11098586321782022 RRRRRRWHWHW 11 Unmodified _RRRRRRWHWHW_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.4979858398438 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 27.864 1 27.818 27.318 28.318 -0.046408 0 0 0 0.9435 1 14370 14370 0 0 1 55037 11772 37061 37884 63887 63887 0.11098586321782022 RRRRRRWHWHW 11 Unmodified _RRRRRRWHWHW_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 894.4940795898438 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 62.402 1 56.226 55.726 56.726 -6.1757 0 0 0 0.9435 1 40261 40261 0 0 1 55038 11772 37061 37884 63888 63888 0.11098586321782022 RRRRRRWKGL 10 Unmodified _RRRRRRWKGL_ 0 0 0 REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 720.4568481445312 2 720.455794 1438.89703 1.3763 0.00099158 1.6551 0.0011924 3.0314 0.002184 720.4570516831525 104.24 0.10536 98.062 98.001 98.107 -6.1757 17 5 4 0 0 0 0.72482 1 69817 69817 0.40072 0.093686 1 29681000 + 55039 25812 37062 37885 63889 63889 0.19514189421647643 RRRRRRWQWRS 11 Unmodified _RRRRRRWQWRS_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 849.994873046875 2 849.991063 1697.96757 NaN NaN NaN NaN NaN NaN NaN 82.389 1 82.451 81.951 82.951 0.062004 0 0 0 0.9435 1 45578 45578 0 0 1 55040 14194 37063 37886 63890 63890 0.14650862739313197 RRRRRRWQWRS 11 Unmodified _RRRRRRWQWRS_ 0 0 0 ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF ENST00000487093.5_1_3:51575631-51661706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 849.9924926757812 2 849.991063 1697.96757 NaN NaN NaN NaN NaN NaN NaN 91.631 1 91.668 91.168 92.168 0.036499 0 0 0 0.9435 1 50965 50965 0 0 1 55041 14194 37063 37886 63891 63891 0.14650862739313197 RRRRRRWRRGE 11 Unmodified _RRRRRRWRRGE_ 0 0 0 REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF REV__ENST00000492275.5_1_21:38445580-38480706:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 820.49169921875 2 820.488688 1638.96282 NaN NaN NaN NaN NaN NaN NaN 98.167 1 98.149 97.649 98.649 -0.018188 0 0 0 0.9435 1 54532 54532 0 0 1 + 55042 25813 37064 37887 63892 63892 0.16889978596532274 RRRRRWWT 8 Unmodified _RRRRRWWT_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.86962890625 2 636.868489 1271.72242 0.50673 0.00032272 -0.81311 -0.00051784 -0.30638 -0.00019512 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 249 65 6 0 0 0 0.80232 2 44710 44710;44825 5.2307 0 1 1280500000 + 55043 21244 37065 37888 63893;63894 63893 0.09743189276446174 RRRRRWWT 8 Unmodified _RRRRRWWT_ 0 0 0 REV__ENSG00000154736|ENST00000284987|ADAMTS5 REV__ENSG00000154736|ENST00000284987|ADAMTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8681030273438 2 636.868489 1271.72242 0.077991 4.967E-05 -0.68714 -0.00043762 -0.60915 -0.00038795 636.8682014843401 80.122 2.4614 80.18 79.905 82.366 0.057587 424 103 6 0 0 0 0.80232 1 44297 44297 5.2307 0 1 13269000000 + 55044 21244 37065 37888 63895 63895 0.09743189276446174 RRRRRWWWRR 10 Unmodified _RRRRRWWWRR_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 835.4148559570312 2 835.485417 1668.95628 NaN NaN NaN NaN NaN NaN NaN 85.937 1 85.999 85.499 86.499 0.061638 0 0 0 1.0061 1 47594 47594 0 0 1 + 55045 26071 37066 37889 63896 63896 0.14856085435803834 RRRRRWWWRRW 11 Unmodified _RRRRRWWWRRW_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5274047851562 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 25.058 1 25.041 24.541 25.541 -0.017006 0 0 0 0.9435 1 12822 12822 0 0 1 + 55046 26071 37067 37890 63897 63897 0.14227732389940684 RRRRRWWWRRW 11 Unmodified _RRRRRWWWRRW_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.526611328125 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 61.019 1 60.53 60.03 61.03 -0.48932 0 0 0 0.9435 1 33233 33233 0 0 1 + 55047 26071 37067 37890 63898 63898 0.14227732389940684 RRRRRWWWRRW 11 Unmodified _RRRRRWWWRRW_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5267944335938 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 96.188 1 95.884 95.384 96.384 -0.30472 0 0 0 0.9435 1 52532 52532 0 0 1 + 55048 26071 37067 37890 63899 63899 0.14227732389940684 RRRRRWWWRRW 11 Unmodified _RRRRRWWWRRW_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.5285034179688 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 75.716 1 75.764 75.264 76.264 0.047943 0 0 0 0.9435 1 41759 41759 0 0 1 + 55049 26071 37067 37890 63900 63900 0.14227732389940684 RRRRSRRQQLH 11 Unmodified _RRRRSRRQQLH_ 0 0 0 REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF REV__ENST00000418710.2_1_7:20824815-20825286:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.9774169921875 3 516.977073 1547.90939 NaN NaN NaN NaN NaN NaN NaN 108.37 1 102.19 101.69 102.69 -6.1757 0 0 0 0.9435 1 72431 72431 0 0 1 + 55050 26807 37068 37891 63901 63901 0.1573518109403267 RRRRWAWPWAR 11 Unmodified _RRRRWAWPWAR_ 0 0 0 REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.9684448242188 3 532.967627 1595.88105 NaN NaN NaN NaN NaN NaN NaN 103.56 1 103.45 102.95 103.95 -0.10458 0 0 0 0.9435 1 56488 56488 0 0 1 + 55051 26328 37069 37892 63902 63902 0.10694483184715864 RRRRWAWPWAR 11 Unmodified _RRRRWAWPWAR_ 0 0 0 REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.9686279296875 3 532.967627 1595.88105 NaN NaN NaN NaN NaN NaN NaN 106.27 1 106.18 105.68 106.68 -0.088829 0 0 0 0.9435 1 57768 57768 0 0 1 + 55052 26328 37069 37892 63903 63903 0.10694483184715864 RRRRWAWPWAR 11 Unmodified _RRRRWAWPWAR_ 0 0 0 REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.9675903320312 3 532.967627 1595.88105 NaN NaN NaN NaN NaN NaN NaN 106.21 1 106.16 105.66 106.66 -0.048103 0 0 0 0.9435 1 58873 58873 0 0 1 + 55053 26328 37069 37892 63904 63904 0.10694483184715864 RRRRWAWPWAR 11 Unmodified _RRRRWAWPWAR_ 0 0 0 REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF REV__ENST00000381140.8_3_13:27998732-27999008:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 532.9678344726562 3 532.967627 1595.88105 NaN NaN NaN NaN NaN NaN NaN 22.3 1 19.565 19.065 20.065 -2.7348 0 0 0 0.9435 1 11988 11988 0 0 1 + 55054 26328 37069 37892 63905 63905 0.10694483184715864 RRRRWGTRRT 10 Unmodified _RRRRWGTRRT_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.6129455566406 3 467.611731 1399.81336 NaN NaN NaN NaN NaN NaN NaN 16.67 1 16.675 16.175 17.175 0.0050564 0 0 0 1.005 1 8370 8370 0.12286 0.028024 1 + 55055 29698 37070 37893 63906 63906 0.1294503325389087 RRRRWHWHWPR 11 Unmodified _RRRRWHWHWPR_ 0 0 0 ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 864.9716796875 2 864.9696 1727.92465 NaN NaN NaN NaN NaN NaN NaN 86.476 1 86.534 86.034 87.034 0.05822 0 0 0 0.9435 1 48014 48014 0 0 1 55056 11772 37071 37894 63907 63907 0.0898009268187252 RRRRWPKG 8 Unmodified _RRRRWPKG_ 0 0 0 REV__ENST00000507297.5_1_5:138858703-138860606:-|nuORF REV__ENST00000507297.5_1_5:138858703-138860606:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2280578613281 3 371.228447 1110.66351 NaN NaN NaN NaN NaN NaN NaN 37.02 1 37.02 36.52 37.52 0 0 0 0 0.97444 1 19668 19668 0.45834 0 1 + 55057 28100 37072 37895 63908 63908 0.1126071298210718 RRRRWPKG 8 Unmodified _RRRRWPKG_ 0 0 0 REV__ENST00000507297.5_1_5:138858703-138860606:-|nuORF REV__ENST00000507297.5_1_5:138858703-138860606:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2279052734375 3 371.228447 1110.66351 NaN NaN NaN NaN NaN NaN NaN 38.087 1 38.087 37.587 38.587 0 0 0 0 0.97444 1 20316 20316 0.45834 0 1 + 55058 28100 37072 37895 63909 63909 0.1126071298210718 RRRRWRRRRPA 11 Unmodified _RRRRWRRRRPA_ 0 0 0 ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF ENST00000556735.1_1_14:51134724-51134856:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.5079956054688 2 811.501598 1620.98864 NaN NaN NaN NaN NaN NaN NaN 97.72 1 97.701 97.201 98.201 -0.018188 0 0 0 0.9435 1 54292 54292 0 0 1 55059 15245 37073 37896 63910 63910 0.20298872838793613 RRRRWRRRRRR 11 Unmodified _RRRRWRRRRRR_ 0 0 0 ENST00000510148.1_1_5:179921418-179921547:+|nuORF REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 883.5557861328125 2 883.55777 1765.10099 NaN NaN NaN NaN NaN NaN NaN 99.071 1 92.895 92.395 93.395 -6.1757 0 0 0 0.94307 1 65868 65868 0.30703 0 1 + 55060 28139 37074 37897 63911 63911 0.24904146635617508 RRRRYNSQFNP 11 Unmodified _RRRRYNSQFNP_ 0 0 0 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.5989990234375 3 498.599268 1492.77598 -0.0076285 -3.8036E-06 -0.44395 -0.00022135 -0.45158 -0.00022516 498.59905978690733 30.363 0.24201 30.393 30.277 30.519 0.030104 29 10 4 0 0 0 0.64126 1 15862 15862 9.2438 7.9141 1 5010900 55061 2341 37075 37898 63912 63912 0.04929897197644095 RRRRYNSQFNP 11 Unmodified _RRRRYNSQFNP_ 0 0 0 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 ENSG00000105617|ENST00000222224|LENG1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 498.599268 1492.77598 0.98966 0.00049344 -0.39357 -0.00019623 0.59609 0.00029721 498.5993253633796 34.674 0.21914 30.579 30.533 30.752 -4.0951 0.09293 6.5583E-05 NaN 9.2438 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5646300 55062 2341 37075 37898 0.04929897197644095 RRRVARVL 8 Unmodified _RRRVARVL_ 0 0 0 REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF REV__ENST00000382952.7_2_4:1205816-1205999:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3423461914062 2 513.343784 1024.67301 1.4598 0.00074938 0.26473 0.0001359 1.7245 0.00088528 513.3433935068208 104.02 0.35697 97.841 97.775 98.132 -6.1757 101 71 2 0 0 0 0.80975 1 69677 69677 0.79363 0 1 11658000 + 55063 26351 37076 37899 63913 63913 0.16166481267646304 RRRWKGKRSPR 11 Unmodified _RRRWKGKRSPR_ 0 0 0 ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF ENST00000478509.1_1_X:153674683-153677303:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.9534912109375 2 741.953084 1481.89161 NaN NaN NaN NaN NaN NaN NaN 96.357 1 96.357 95.857 96.857 0 0 0 0 0.9435 1 53249 53249 0 0 1 55064 14019 37077 37900 63914 63914 0.1699446583916142 RRRWKLWMDAR 11 Unmodified _RRRWKLWMDAR_ 0 0 0 REV__ENST00000424349.1_1_3:14988719-14988935:-|nuORF REV__ENST00000424349.1_1_3:14988719-14988935:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2938232421875 3 525.293011 1572.8572 1.1792 0.00061943 0.9322 0.00048968 2.1114 0.0011091 525.2931413840954 20.146 0.21124 17.49 17.333 17.544 -2.6564 30 15 3 0 0 0 0.74429 1 10688 10688 0.094841 0 1 2808900 + 55065 26878 37078 37901 63915 63915 0.09368881636032711 RRRWQKTRRKR 11 Unmodified _RRRWQKTRRKR_ 0 0 0 REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF REV__ENST00000272342.5_1_2:67624599-67624692:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.0071411132812 2 814.003639 1625.99273 NaN NaN NaN NaN NaN NaN NaN 62.886 1 62.886 62.386 63.386 0 0 0 0 0.9435 1 35078 35078 0 0 1 + 55066 25147 37079 37902 63916 63916 0.20476917541827788 RRRWRFRSLF 10 Unmodified _RRRWRFRSLF_ 0 0 0 REV__ENSG00000091986|ENST00000206423|CCDC80 REV__ENSG00000091986|ENST00000206423|CCDC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 740.4334106445312 2 740.431453 1478.84835 0.62299 0.00046128 0.31316 0.00023187 0.93616 0.00069316 740.4315748770566 90.316 0.21145 84.14 84.025 84.236 -6.1757 13 12 2 0 0 0 0.67033 1 59666 59666 6.2058 1.6769 1 6250100 + 55067 17899 37080 37903 63917 63917 0.12808276061878132 RRRWRKWGGWQ 11 Unmodified _RRRWRKWGGWQ_ 0 0 0 ENST00000502692.5_1_11:66328782-66328953:+|nuORF ENST00000502692.5_1_11:66328782-66328953:+|nuORF ENST00000502692.5_1_11:66328782-66328953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 786.43212890625 2 786.431984 1570.84942 0.80085 0.00062981 0.23483 0.00018468 1.0357 0.00081449 786.4322825729254 50.786 0.27283 50.732 50.55 50.823 -0.053871 32 13 3 0 0 0 0.74203 1 27441 27441 0.30703 0 1 4216300 55068 14456 37081 37904 63918 63918 0.08682490430760481 RRRWRLLPFR 10 Unmodified _RRRWRLLPFR_ 0 0 0 ENST00000371646.9_1_6:44214858-44216493:+|nuORF ENST00000371646.9_1_6:44214858-44216493:+|nuORF ENST00000371646.9_1_6:44214858-44216493:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.9700012207031 3 485.968856 1454.88474 0.45745 0.00022231 1.2009 0.0005836 1.6583 0.0008059 485.9695112969602 61.55 0.1728 61.517 61.435 61.608 -0.032791 15 8 2 0 0 0 0.72044 1 33613 33613 0.62683 0.17231 1 3848400 55069 12363 37082 37905 63919 63919 0.17549152958576997 RRRWWRFLLWS 11 Unmodified _RRRWWRFLLWS_ 0 0 0 REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 831.4689331054688 2 831.468035 1660.92152 NaN NaN NaN NaN NaN NaN NaN 73.601 1 67.425 66.925 67.925 -6.1757 0 0 0 0.9435 1 48129 48129 0 0 1 + 55070 26907 37083 37906 63920 63920 0.1174940478449571 RRRWYAWKERL 11 Unmodified _RRRWYAWKERL_ 0 0 0 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4539794921875 2 810.455125 1618.8957 NaN NaN NaN NaN NaN NaN NaN 54.321 1 54.321 53.821 54.821 0 0 0 0 0.9435 1 30154 30154 0 0 1 + 55071 29479 37084 37907 63921 63921 0.11100510542178199 RRRWYAWKERL 11 Unmodified _RRRWYAWKERL_ 0 0 0 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 REV__nc|ENSG00000003096|Q9P2N7-5|KLHL13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 810.0529174804688 2 810.455125 1618.8957 NaN NaN NaN NaN NaN NaN NaN 69.265 1 68.785 68.285 69.285 -0.48071 0 0 0 0.9435 1 37865 37865 0 0 1 + 55072 29479 37084 37907 63922 63922 0.11100510542178199 RRRYLRRKER 10 Unmodified _RRRYLRRKER_ 0 0 0 ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.9743957519531 3 496.97467 1487.90218 -0.47947 -0.00023828 0.12829 6.3758E-05 -0.35117 -0.00017452 496.97464366094727 101.41 0.13248 101.37 101.27 101.41 -0.04216 18 4 6 0 0 0 0.72607 1 56340 56340 0 0 1 39415000 55073 10958 37085 37908 63923 63923 0.17774448493582895 RRSAAEPSF 9 Unmodified _RRSAAEPSF_ 0 0 0 REV__nc|ENSG00000004866|Q9NRC1-7|ST7 REV__nc|ENSG00000004866|Q9NRC1-7|ST7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7647705078125 2 510.764697 1019.51484 0.64154 0.00032768 -0.32102 -0.00016397 0.32052 0.00016371 510.764599109794 18.836 0.28819 16.214 16.076 16.364 -2.6215 50 19 3 0 0 0 0.45045 1 9869 9869 10.074 0 1 18514000 + 55074 16956 37086 37909 63924 63924 0.0058651749790215035 RRSGLTRHVG 10 Unmodified _RRSGLTRHVG_ 0 0 0 ENST00000376406.7_1_6:30685397-30685574:-|nuORF ENST00000376406.7_1_6:30685397-30685574:-|nuORF ENST00000376406.7_1_6:30685397-30685574:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.83203125 2 569.831237 1137.64792 NaN NaN NaN NaN NaN NaN NaN 102.16 1 102.12 101.62 102.62 -0.045853 0 0 0 0.98312 1 56750 56750 2.4985 0.19575 1 55075 12494 37087 37910 63925 63925 0.08460381674422024 RRSGPRTV 8 Unmodified _RRSGPRTV_ 0 0 0 REV__ENST00000478694.1_1_20:62608437-62611281:-|nuORF REV__ENST00000478694.1_1_20:62608437-62611281:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7752990722656 2 464.7754 927.536246 NaN NaN NaN NaN NaN NaN NaN 79.444 1 78.955 78.455 79.455 -0.48932 0 0 0 0.97444 1 43512 43512 2.5775 0 1 + 55076 27641 37088 37911 63926 63926 0.06957947317289381 RRSHHSQISMR 11 Unmodified _RRSHHSQISMR_ 0 0 0 REV__ENST00000512146.6_1_5:121736783-121799188:+|nuORF REV__ENST00000512146.6_1_5:121736783-121799188:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.5772094726562 3 465.577587 1393.71093 0.12518 5.8279E-05 -0.56978 -0.00026527 -0.4446 -0.000207 465.5772410885109 45.6 0.26727 45.572 45.456 45.724 -0.028011 41 13 4 0 0 0 0.31454 1 24465 24465 16.838 7.0741 1 51075000 + 55077 28165 37089 37912 63927 63927 0.029825794001226313 RRSPREPRSE 10 Unmodified _RRSPREPRSE_ 0 0 0 REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF REV__ENST00000309993.2_1_3:135913869-135914463:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 635.3447875976562 2 635.342166 1268.66978 NaN NaN NaN NaN NaN NaN NaN 102.68 1 96.499 95.999 96.999 -6.1757 0 0 0 0.97855 1 68892 68892 2.9952 0.26005 1 + 55078 25412 37090 37913 63928 63928 0.04619141632338142 RRSPRLLP 8 Unmodified _RRSPRLLP_ 0 0 0 REV__ENSG00000196313|ENST00000434423|POM121 REV__ENSG00000196313|ENST00000434423|POM121 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.818359375 2 497.817067 993.619582 -0.50212 -0.00024997 2.7237 0.0013559 2.2216 0.0011059 497.8179737980634 106 0.14096 105.95 105.9 106.05 -0.048103 8 5 2 0 0 0 0.80992 1 58787 58787 0.69038 0 1 1555600 + 55079 23815 37091 37914 63929 63929 0.12251683765134658 RRSRKWRGLYH 11 Unmodified _RRSRKWRGLYH_ 0 0 0 ENST00000403909.2_1_6:139660476-139660551:+|nuORF ENST00000403909.2_1_6:139660476-139660551:+|nuORF ENST00000403909.2_1_6:139660476-139660551:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 757.9341430664062 2 757.931817 1513.84908 3.0228 0.0022911 0.43524 0.00032988 3.458 0.002621 758.4338591325593 97.113 0.97666 97.106 96.826 97.802 -0.007019 59 36 2 0 0 0 0.7453 3 53874 53874;53986;54212 0 0 1 117670000 55080 12909 37092 37915 63930;63931;63932 63930 0.11271070710927233 RRTAVKCV 8 Unmodified _RRTAVKCV_ 0 0 0 REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.2770690917969 2 466.776554 931.538554 1.5291 0.00071373 3.9277 0.0018334 5.4568 0.0025471 466.7782413511538 103.44 0.044205 97.267 97.238 97.282 -6.1757 4 2 2 0 0 0 8.7369 1 69360 69360 0.69038 0.69038 1 4716800 + 55081 26622 37093 37916 63933 63933 0.07004659730728235 RRTDCNLYF 9 Unmodified _RRTDCNLYF_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2849731445312 2 594.28494 1186.55533 0.62007 0.0003685 -0.19481 -0.00011577 0.42526 0.00025273 594.2837377011873 99.258 0.15384 93.083 92.974 93.128 -6.1757 13 8 2 0 0 0 0.19127 1 66004 66004 24.021 0 1 50169000 + 55082 22894 37094 37917 63934 63934 -0.030488841739725103 RRTQYMPM 8 Unmodified _RRTQYMPM_ 0 0 0 REV__ENST00000448173.5_1_7:72474205-72476389:-|nuORF REV__ENST00000448173.5_1_7:72474205-72476389:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.2865600585938 2 541.765329 1081.5161 1.2867 0.00069707 1.4824 0.0008031 2.769 0.0015002 541.766280332153 33.836 0.25272 29.851 29.731 29.984 -3.9853 15 13 2 0 0 0 8.7369 1 19488 19488 14.582 0 1 4338300 + 55083 27170 37095 37918 63935 63935 -0.021393077292032103 RRTRKRIRLL 10 Unmodified _RRTRKRIRLL_ 0 0 0 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.4627685546875 2 684.462753 1366.91095 -0.42725 -0.00029244 0.59801 0.00040931 0.17076 0.00011688 684.4624959721025 103.95 0.14165 103.9 103.85 103.99 -0.048737 10 6 2 0 0 0 0.72607 1 57739 57739 0 0 1 2988200 + 55084 20938 37096 37919 63936 63936 0.2421742213007292 RRTTRRWKRWF 11 Unmodified _RRTTRRWKRWF_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 824.972900390625 2 824.974016 1647.93348 NaN NaN NaN NaN NaN NaN NaN 97.689 1 97.671 97.171 98.171 -0.018188 0 0 0 0.9435 1 54275 54275 0 0 1 55085 16344 37097 37920 63937 63937 0.13543021527652854 RRTVRRNRHF 10 Unmodified _RRTVRRNRHF_ 0 0 0 REV__ENSG00000162490|ENST00000294485|DRAXIN REV__ENSG00000162490|ENST00000294485|DRAXIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.6088562011719 3 466.608098 1396.80247 1.8733 0.00087411 0.80543 0.00037582 2.6788 0.0012499 466.60834856424776 93.753 0.76363 93.776 93.381 94.144 0.022987 72 30 3 0 0 0 0.72464 3 52027 52027;52127;52244 0.15932 0 1 2639700 + 55086 21650 37098 37921 63938;63939;63940 63938 0.11993630879624106 RRTVRRNRHF 10 Unmodified _RRTVRRNRHF_ 0 0 0 REV__ENSG00000162490|ENST00000294485|DRAXIN REV__ENSG00000162490|ENST00000294485|DRAXIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.6084289550781 3 466.608098 1396.80247 NaN NaN NaN NaN NaN NaN NaN 93.149 1 93.172 92.672 93.672 0.022987 0 0 0 1.0047 1 51794 51794 0.15932 0 1 + 55087 21650 37098 37921 63941 63941 0.11993630879624106 RRVAAGGF 8 Unmodified _RRVAAGGF_ 0 0 0 REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2397766113281 2 417.240661 832.46677 NaN NaN NaN NaN NaN NaN NaN 76.635 1 76.155 75.655 76.655 -0.47945 0 0 0 0.97444 1 41958 41958 2.8892 2.0956 1 + 55088 26113 37099 37922 63942 63942 0.04383488368523558 RRVCTLLVF 9 Unmodified _RRVCTLLVF_ 0 0 0 ENSG00000205330|ENST00000642104|OR6C1 ENSG00000205330|ENST00000642104|OR6C1 ENSG00000205330|ENST00000642104|OR6C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8328857421875 2 553.828786 1105.64302 NaN NaN NaN NaN NaN NaN NaN 93.878 1 93.901 93.401 94.401 0.022987 0 0 0 0.83329 1 52184 52184 3.5965 0.70727 1 55089 10360 37100 37923 63943 63943 0.09442361487458584 RRVKRSRRRPL 11 Unmodified _RRVKRSRRRPL_ 0 0 0 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 ENSG00000167543|ENST00000301057|TP53I13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.9915466308594 3 493.990431 1478.94946 NaN NaN NaN NaN NaN NaN NaN 104.12 1 104.07 103.57 104.57 -0.048737 0 0 0 0.9435 1 57813 57813 0 0 1 55090 7627 37101 37924 63944 63944 0.22914727764600684 RRVLSWVPVL 10 Unmodified _RRVLSWVPVL_ 0 0 0 ENST00000482827.1_1_X:74722059-74742841:-|nuORF;nc|ENSG00000102383|Q96MV8-2|ZDHHC15;nc|ENSG00000102383|Q96MV8-3|ZDHHC15;ENSG00000102383|ENST00000373367|ZDHHC15 ENST00000482827.1_1_X:74722059-74742841:-|nuORF ENST00000482827.1_1_X:74722059-74742841:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8828125 2 612.882407 1223.75026 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.74 103.24 104.24 -0.048737 0 0 0 1.0019 1 57634 57634 0.45834 0.057624 1 55091 2039 37102 37925 63945 63945 0.1473365469332748 RRVLVNASL 9 Unmodified _RRVLVNASL_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3221435546875 2 514.322183 1026.62981 0.28068 0.00014436 0.39777 0.00020458 0.67844 0.00034894 514.322477243056 34.619 0.19296 34.647 34.52 34.713 0.027405 19 8 3 0 0 0 0.23158 1 18238 18238 20.454 0 1 4411600 55092 16693 37103 37926 63946 63946 0.11756246699701478 RRVPILLEGI 10 Unmodified _RRVPILLEGI_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3746337890625 2 583.374415 1164.73428 NaN NaN NaN NaN NaN NaN NaN 19.693 1 19.701 19.201 20.201 0.0078487 0 0 0 1.0061 1 10025 10025 0 0 1 + 55093 23319 37104 37927 63947 63947 0.15849948456434504 RRVPSRRRP 9 Unmodified _RRVPSRRRP_ 0 0 0 REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF REV__ENST00000562205.1_1_16:2303967-2305746:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.9153747558594 3 393.91464 1178.72209 0.49805 0.00019619 -0.52031 -0.00020496 -0.022257 -8.7674E-06 393.91452000952586 68.827 0.29732 68.852 68.748 69.045 0.025146 22 13 2 0 0 0 0.60664 1 37873 37873 0.96228 0.96228 1 1615100 + 55094 24246 37105 37928 63948 63948 0.13987769556592866 RRVRIVNVEVL 11 Unmodified _RRVRIVNVEVL_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8;REV__chr11:17397016-17397193|98|10.91|0.38|4.84|-|ENST00000647086|ABCC8,ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.9296875 2 676.927877 1351.8412 1.6115 0.0010909 1.2557 0.00085001 2.8672 0.0019409 676.9284253952122 105.64 0.36507 99.464 99.375 99.74 -6.1757 74 37 3 0 0 0 0.74203 1 70752 70752 0.30703 0 1 9821200 + 55095 16982;16771 37106 37929 63949 63949 0.17935498670794914 RRVSSRSY 8 Unmodified _RRVSSRSY_ 0 0 0 REV__nc|ENSG00000165929|Q8N9U0-2|TC2N REV__nc|ENSG00000165929|Q8N9U0-2|TC2N MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7785034179688 2 505.778139 1009.54173 0.16831 8.5129E-05 0.074114 3.7485E-05 0.24243 0.00012261 505.7781896466 22.896 0.41227 20.118 19.91 20.322 -2.7784 73 28 3 0 0 0 0.71527 1 12474 12474 15.847 2.8047 1 47505000 + 55096 22065 37107 37930 63950 63950 0.037336261090899825 RRVVWPHY 8 Unmodified _RRVVWPHY_ 0 0 0 REV__ENSG00000224051|ENST00000343938|CPTP REV__ENSG00000224051|ENST00000343938|CPTP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5420227050781 3 371.54192 1111.60393 0.76608 0.00028463 0.6339 0.00023552 1.4 0.00052015 371.5420213242218 47.326 0.46074 47.287 47.1 47.561 -0.038643 46 21 3 0 0 0 0.80859 1 25440 25440 1.4819 0.70537 1 68617000 + 55097 24377 37108 37931 63951 63951 0.05259397248073583 RRWARVRFR 9 Unmodified _RRWARVRFR_ 0 0 0 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant;ENSG00000249715|ENST00000624922|FER1L5 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.891845703125 2 651.891964 1301.76937 NaN NaN NaN NaN NaN NaN NaN 27.511 1 27.54 27.04 28.04 0.028664 0 0 0 0.8622 1 14299 14299 0 0 1 55098 10748 37109 37932 63952 63952 0.13056048827593258 RRWEHWWRMER 11 Unmodified _RRWEHWWRMER_ 0 0 0 ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 864.4297485351562 2 864.426042 1726.83753 NaN NaN NaN NaN NaN NaN NaN 101.34 1 101.3 100.8 101.8 -0.04216 0 0 0 0.9435 1 56301 56301 0 0 1 55099 12842 37110 37933 63953 63953 0.0031850562527324655 RRWEPHHL 8 Unmodified _RRWEPHHL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MSMS AL20221201_MKP_PDAC_01 4 377.5378112792969 3 377.537058 1129.58934 NaN NaN NaN NaN NaN NaN NaN 19.12 1 16.466 15.966 16.966 -2.6544 0 0 0 0.9706 1 10105 10105 4.3292 1.8308 1 55100 6274 37111 37934 63954 63954 0.02973325099947033 RRWERFNL 8 Unmodified _RRWERFNL_ 0 0 0 ENST00000399640.3_1_8:134471412-134471994:-|nuORF ENST00000399640.3_1_8:134471412-134471994:-|nuORF ENST00000399640.3_1_8:134471412-134471994:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8835754394531 3 392.884346 1175.63121 -0.52571 -0.00020654 -0.52421 -0.00020596 -1.0499 -0.0004125 392.8841942329517 19.226 0.13835 19.226 19.16 19.299 0 13 8 2 0 0 0 0.80676 1 9601 9601 1.6526 0.45928 1 691770 55101 12866 37112 37935 63955 63955 0.05041880788485287 RRWFLKKK 8 Unmodified _RRWFLKKK_ 0 0 0 REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF REV__ENST00000393085.3_1_7:135614431-135614677:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.372314453125 2 581.37201 1160.72947 1.5622 0.00090822 -2.807 -0.0016319 -1.2448 -0.00072367 581.3700786226239 105.77 0.19277 99.591 99.527 99.72 -6.1757 33 20 2 0 0 0 0.80992 1 70843 70843 0.69038 0.16561 1 3333400 + 55102 26413 37113 37936 63956 63956 0.15553109104303076 RRWGWEWRRKR 11 Unmodified _RRWGWEWRRKR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4630126953125 2 836.463816 1670.91308 NaN NaN NaN NaN NaN NaN NaN 76.94 1 76.94 76.44 77.44 0 0 0 0 0.9435 1 42770 42770 0 0 1 + 55103 27251 37114 37937 63957 63957 0.1044585086783627 RRWGWEWRRKR 11 Unmodified _RRWGWEWRRKR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.4667358398438 2 836.463816 1670.91308 NaN NaN NaN NaN NaN NaN NaN 22.464 1 22.481 21.981 22.981 0.01749 0 0 0 0.9435 1 11537 11537 0 0 1 + 55104 27251 37114 37937 63958 63958 0.1044585086783627 RRWGWEWRRKR 11 Unmodified _RRWGWEWRRKR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 836.4672241210938 2 836.463816 1670.91308 NaN NaN NaN NaN NaN NaN NaN 85.845 1 79.669 79.169 80.169 -6.1757 0 0 0 0.9435 1 56562 56562 0 0 1 + 55105 27251 37114 37937 63959 63959 0.1044585086783627 RRWHRKRRKLL 11 Unmodified _RRWHRKRRKLL_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.0142822265625 2 803.013476 1604.0124 NaN NaN NaN NaN NaN NaN NaN 19.456 1 19.456 18.956 19.956 0 0 0 0 0.9435 1 9729 9729 0 0 1 55106 13051 37115 37938 63960 63960 0.2345529355261533 RRWHRSLEL 9 Unmodified _RRWHRSLEL_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 417.8971252441406 3 418.2389 1251.69487 0.4669 0.00019528 0.24721 0.00010339 0.71411 0.00029867 418.2396243310962 23.579 0.12098 20.751 20.651 20.772 -2.8273 8 6 2 0 0 0 0.20207 1 12775 12775 11.495 6.1978 1 1650100 + 55107 23692 37116 37939 63961 63961 0.07909241225547703 RRWKRWFKFR 10 Unmodified _RRWKRWFKFR_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.1864013671875 2 783.457471 1564.90039 NaN NaN NaN NaN NaN NaN NaN 100.5 1 100.45 99.954 100.95 -0.04216 0 0 0 1.0024 1 55826 55826 0.40072 0.093686 1 55108 16344 37117 37940 63962 63962 0.14053439475605956 RRWLELNRE 9 Unmodified _RRWLELNRE_ 0 0 0 nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;ENST00000464333.5_1_22:32012607-32014401:+|nuORF nc|ENSG00000198089|A8K8P3-10|SFI1 nc|ENSG00000198089|A8K8P3-10|SFI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.35400390625 2 636.352003 1270.68945 0.038873 2.4737E-05 1.9268 0.0012261 1.9657 0.0012508 636.3533020337351 99.901 0.66164 99.743 99.153 99.815 -0.1575 60 22 3 0 0 0 0.57331 2 54468 54468;54572 2.9952 0.49676 1 9686700 55109 10049 37118 37941 63963;63964 63963 0.06493517643070845 RRWLREQQHRR 11 Unmodified _RRWLREQQHRR_ 0 0 0 ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L ENSG00000120254|ENST00000367321|MTHFD1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 810.9563598632812 2 810.956355 1619.89816 NaN NaN NaN NaN NaN NaN NaN 89.164 1 89.211 88.711 89.711 0.047852 0 0 0 0.9435 1 49602 49602 0 0 1 55110 3502 37119 37942 63965 63965 0.11300358999847049 RRWNHWWDKCR 11 Unmodified _RRWNHWWDKCR_ 0 0 0 ENST00000250405.9_2_14:23777280-23778100:+|nuORF ENST00000250405.9_2_14:23777280-23778100:+|nuORF ENST00000250405.9_2_14:23777280-23778100:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.8997802734375 2 821.89966 1641.78477 NaN NaN NaN NaN NaN NaN NaN 72.831 1 72.872 72.372 73.372 0.041725 0 0 0 0.9435 1 40113 40113 0 0 1 55111 11138 37120 37943 63966 63966 -0.010454524375518304 RRWQRIERK 9 Unmodified _RRWQRIERK_ 0 0 0 REV__nc|ENSG00000165240|Q04656-5|ATP7A REV__nc|ENSG00000165240|Q04656-5|ATP7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2668151855469 3 443.26545 1326.77452 1.7106 0.00075825 -0.026262 -1.1641E-05 1.6843 0.0007466 443.26520431189243 104.99 0.13551 98.818 98.705 98.841 -6.1757 17 9 2 0 0 0 0.61801 1 70249 70249 0.26902 0 1 30315000 + 55112 21996 37121 37944 63967 63967 0.12420307899515137 RRWRLLLLGL 10 Unmodified _RRWRLLLLGL_ 0 0 0 REV__ENSG00000130876|ENST00000253188|SLC7A10 REV__ENSG00000130876|ENST00000253188|SLC7A10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.8994140625 2 648.424774 1294.83499 NaN NaN NaN NaN NaN NaN NaN 94.138 1 93.718 93.218 94.218 -0.42044 0 0 0 1.0061 1 51435 51435 0 0 1 + 55113 19751 37122 37945 63968 63968 0.19937025229955907 RRWRQRRRWPY 11 Unmodified _RRWRQRRRWPY_ 0 0 0 REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 858.4846801757812 2 858.48254 1714.95053 NaN NaN NaN NaN NaN NaN NaN 23.374 1 23.396 22.896 23.896 0.021185 0 0 0 0.9435 1 12038 12038 0 0 1 + 55114 26124 37123 37946 63969 63969 0.1216494213349506 RRWRQRRRWPY 11 Unmodified _RRWRQRRRWPY_ 0 0 0 REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 858.48486328125 2 858.48254 1714.95053 NaN NaN NaN NaN NaN NaN NaN 29.301 1 25.999 25.499 26.499 -3.3016 0 0 0 0.9435 1 16447 16447 0 0 1 + 55115 26124 37123 37946 63970 63970 0.1216494213349506 RRWRRRLP 8 Unmodified _RRWRRRLP_ 0 0 0 REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.25048828125 3 399.251363 1194.73226 NaN NaN NaN NaN NaN NaN NaN 64.671 1 64.671 64.171 65.171 0 0 0 0 0.97444 1 36069 36069 0.45834 0.18932 1 + 55116 26800 37124 37947 63971 63971 0.14268377281837274 RRWRRRRRRRR 11 Unmodified _RRWRRRRRRRR_ 0 0 0 REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 883.5542602539062 2 883.55777 1765.10099 NaN NaN NaN NaN NaN NaN NaN 86.081 1 86.081 85.581 86.581 0 0 0 0 0.9435 1 47688 47688 0 0 1 + 55117 28139 37125 37948 63972 63972 0.24904146635617508 RRWRRSPRWRR 11 Unmodified _RRWRRSPRWRR_ 0 0 0 REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.63427734375 2 834.488156 1666.96176 0.65436 0.00054606 0.0055113 4.5991E-06 0.65987 0.00055065 834.4887744937246 90.021 0.13718 90.064 89.94 90.077 0.042175 5 4 2 0 0 0 0.7453 1 50062 50062 0 0 1 6146300 + 55118 26233 37126 37949 63973 63973 0.15495764227603104 RRWRRSPRWRR 11 Unmodified _RRWRRSPRWRR_ 0 0 0 REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.4869995117188 2 834.488156 1666.96176 NaN NaN NaN NaN NaN NaN NaN 85.953 1 86.014 85.514 86.514 0.061638 0 0 0 0.94307 1 47609 47609 0.30703 0 1 + 55119 26233 37126 37949 63974 63974 0.15495764227603104 RRWRRSPRWRR 11 Unmodified _RRWRRSPRWRR_ 0 0 0 REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF REV__ENST00000376874.8_1_12:124017965-124018079:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.5592041015625 2 834.488156 1666.96176 0.65436 0.00054606 0.0055113 4.5991E-06 0.65987 0.00055065 834.4887744937246 90.021 0.13718 90.064 89.94 90.077 0.042175 5 4 2 0 0 0 0.30605 1 50029 50029 0 0 1 6146300 + 55120 26233 37126 37949 63975 63975 0.15495764227603104 RRWRRWRWRW 10 Unmodified _RRWRRWRWRW_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 850.4766845703125 2 850.474518 1698.93448 NaN NaN NaN NaN NaN NaN NaN 96.655 1 96.648 96.148 97.148 -0.007019 0 0 0 1.0061 1 53678 53678 0 0 1 + 55121 24899 37127 37950 63976 63976 0.11297280687244893 RRWRWRAAAA 10 Unmodified _RRWRWRAAAA_ 0 0 0 ENST00000005340.9_1_17:7137570-7137852:-|nuORF ENST00000005340.9_1_17:7137570-7137852:-|nuORF ENST00000005340.9_1_17:7137570-7137852:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.36865234375 2 650.368321 1298.72209 NaN NaN NaN NaN NaN NaN NaN 90.125 1 89.624 89.124 90.124 -0.50171 0 0 0 1.0061 1 49267 49267 0 0 1 55122 10962 37128 37951 63977 63977 0.08467769556614257 RRWSHRCY 8 Unmodified _RRWSHRCY_ 0 0 0 nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2 nc|ENSG00000131042|Q8N423-4|LILRB2 nc|ENSG00000131042|Q8N423-4|LILRB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5264587402344 3 388.526164 1162.55666 NaN NaN NaN NaN NaN NaN NaN 15.162 1 15.162 14.662 15.662 0 0 0 0 0.97444 1 7280 7280 0.40072 0 1 55123 4290 37129 37952 63978 63978 -0.01811205294575302 RRWSRWCSPRW 11 Unmodified _RRWSRWCSPRW_ 0 0 0 REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.9336547851562 3 525.933594 1574.77895 NaN NaN NaN NaN NaN NaN NaN 15.087 1 15.093 14.593 15.593 0.0057774 0 0 0 0.9435 1 7505 7505 0 0 1 + 55124 26916 37130 37953 63979 63979 0.014554490508089657 RRWWFYLFILQ 11 Unmodified _RRWWFYLFILQ_ 0 0 0 REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 814.4496459960938 2 814.448446 1626.88234 NaN NaN NaN NaN NaN NaN NaN 62.996 1 56.82 56.32 57.32 -6.1757 0 0 0 0.94337 1 40679 40679 0 0 1 + 55125 27488 37131 37954 63980 63980 0.09397259710249273 RRWWFYLFILQ 11 Unmodified _RRWWFYLFILQ_ 0 0 0 REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 814.449462890625 2 814.448446 1626.88234 NaN NaN NaN NaN NaN NaN NaN 63.207 1 57.031 56.531 57.531 -6.1757 0 0 0 0.94337 1 40835 40835 0 0 1 + 55126 27488 37131 37954 63981 63981 0.09397259710249273 RRWWRRRLWQL 11 Unmodified _RRWWRRRLWQL_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 856.498779296875 2 856.497659 1710.98076 NaN NaN NaN NaN NaN NaN NaN 89.408 1 89.456 88.956 89.956 0.047852 0 0 0 0.9435 1 49736 49736 0 0 1 55127 11437 37132 37955 63982 63982 0.15371300798688026 RRYDWSSPLTL 11 Unmodified _RRYDWSSPLTL_ 0 0 0 REV__nc|ENSG00000143207|Q8NHY2-3|COP1 REV__nc|ENSG00000143207|Q8NHY2-3|COP1 MSMS AL20221201_MKP_PDAC_01 4 697.3648681640625 2 697.364776 1392.715 NaN NaN NaN NaN NaN NaN NaN 49.06 1 43.664 43.164 44.164 -5.3961 0 0 0 0.13061 1 30614 30614 45.74 18.517 1 + 55128 29675 37133 37956 63983 63983 0.034349473748534365 RRYEEWKWFRC 11 Unmodified _RRYEEWKWFRC_ 0 0 0 ENST00000468293.5_1_7:150707648-150709543:+|nuORF;ENST00000477227.1_1_7:150707648-150711254:+|nuORF;ENSG00000164867|ENST00000297494|NOS3 ENST00000468293.5_1_7:150707648-150709543:+|nuORF;ENSG00000164867|ENST00000297494|NOS3 ENSG00000164867|ENST00000297494|NOS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.6040649414062 3 553.605143 1657.7936 NaN NaN NaN NaN NaN NaN NaN 15.44 1 15.426 14.926 15.926 -0.014067 0 0 0 0.9435 1 7577 7577 0 0 1 55129 7254;13802 37134 37957 63984 63984 -0.008985235917407408 RRYEEWKWFRC 11 Unmodified _RRYEEWKWFRC_ 0 0 0 ENST00000468293.5_1_7:150707648-150709543:+|nuORF;ENST00000477227.1_1_7:150707648-150711254:+|nuORF;ENSG00000164867|ENST00000297494|NOS3 ENST00000468293.5_1_7:150707648-150709543:+|nuORF;ENSG00000164867|ENST00000297494|NOS3 ENSG00000164867|ENST00000297494|NOS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.6039428710938 3 553.605143 1657.7936 NaN NaN NaN NaN NaN NaN NaN 27.799 1 27.828 27.328 28.328 0.029564 0 0 0 0.9435 1 14456 14456 0 0 1 55130 7254;13802 37134 37957 63985 63985 -0.008985235917407408 RRYLRYEFIFF 11 Unmodified _RRYLRYEFIFF_ 0 0 0 ENST00000494581.1_1_13:115011497-115012507:+|nuORF ENST00000494581.1_1_13:115011497-115012507:+|nuORF ENST00000494581.1_1_13:115011497-115012507:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2943115234375 3 537.292782 1608.85652 0.81796 0.00043949 1.7027 0.00091484 2.5207 0.0013543 537.2934670627467 99.238 0.39737 93.062 92.908 93.306 -6.1757 61 24 4 0 0 0 0.74096 1 66022 66022 0.40827 0.31342 1 40210000 55131 14333 37135 37958 63986 63986 0.07644365467967873 RRYQRHYYYYR 11 Unmodified _RRYQRHYYYYR_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 862.432861328125 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 69.122 1 68.641 68.141 69.141 -0.48071 0 0 0 0.9435 1 37784 37784 0 0 1 + 55132 20508 37136 37959 63987 63987 0.01663025920288419 RRYQRHYYYYR 11 Unmodified _RRYQRHYYYYR_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 862.435302734375 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 47.372 1 42.253 41.753 42.753 -5.1192 0 0 0 0.9435 1 29394 29394 0 0 1 + 55133 20508 37136 37959 63988 63988 0.01663025920288419 RRYQRHYYYYR 11 Unmodified _RRYQRHYYYYR_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 862.4331665039062 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 47.56 1 42.326 41.826 42.826 -5.2339 0 0 0 0.9435 1 29530 29530 0 0 1 + 55134 20508 37136 37959 63989 63989 0.01663025920288419 RRYQRHYYYYR 11 Unmodified _RRYQRHYYYYR_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 862.4330444335938 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 105.44 1 99.26 98.76 99.76 -6.1757 0 0 0 0.9435 1 70649 70649 0 0 1 + 55135 20508 37136 37959 63990 63990 0.01663025920288419 RRYRIWKRRRV 11 Unmodified _RRYRIWKRRRV_ 0 0 0 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.0098876953125 2 823.010933 1644.00731 NaN NaN NaN NaN NaN NaN NaN 102 1 101.95 101.45 102.45 -0.045853 0 0 0 0.9435 1 56659 56659 0 0 1 + 55136 24224 37137 37960 63991 63991 0.2110698968995166 RSAQLKIKL 9 Unmodified _RSAQLKIKL_ 0 0 0 REV__ENSG00000166510|ENST00000591504|CCDC68 REV__ENSG00000166510|ENST00000591504|CCDC68 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.84716796875 3 352.901114 1055.68151 1.8897 0.00066688 -1.478 -0.00052158 0.41175 0.00014531 352.900583449639 21.249 0.12999 18.556 18.433 18.563 -2.693 12 6 2 0 0 0 0.21906 1 11357 11357 0.20686 0 1 5311200 + 55137 22129 37138 37961 63992 63992 0.15589990393596054 RSAVARIQEFF 11 Unmodified _RSAVARIQEFF_ 0 0 0 nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6;ENST00000478668.1_1_1:168014424-168033024:+|nuORF;nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6 nc|ENSG00000143164|Q58WW2-4|DCAF6 nc|ENSG00000143164|Q58WW2-4|DCAF6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2674865722656 3 441.910449 1322.70952 1.1857 0.00052396 -2.0262 -0.0008954 -0.84052 -0.00037144 441.9091593143747 34.209 0.37347 30.224 30.022 30.396 -3.9853 48 20 3 0 0 0 0.30445 1 19590 19590 2.4348 0 1 20033000 55138 5471 37139 37962 63993 63993 0.061072685830367845 RSCGWECDPT 10 Unmodified _RSCGWECDPT_ 0 0 0 ENST00000531769.5_2_1:47059880-47082472:-|nuORF ENST00000531769.5_2_1:47059880-47082472:-|nuORF ENST00000531769.5_2_1:47059880-47082472:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5458374023438 3 385.151553 1152.43283 NaN NaN NaN NaN NaN NaN NaN 26.167 1 26.194 25.694 26.694 0.026951 0 0 0 0.99248 1 13567 13567 0.62683 0 1 55139 14912 37140 37963 63994 63994 -0.13729088967716052 RSCSYRFKNHF 11 Unmodified _RSCSYRFKNHF_ 0 0 0 ENST00000512381.1_1_6:41978777-42016405:-|nuORF ENST00000512381.1_1_6:41978777-42016405:-|nuORF ENST00000512381.1_1_6:41978777-42016405:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.7989807128906 4 361.928023 1443.68299 -0.3422 -0.00012385 -0.1949 -7.0541E-05 -0.53711 -0.00019439 361.9284789056658 36.76 0.13126 36.781 36.727 36.858 0.021545 13 5 3 0 0 0 0.30599 1 19516 19516 0.094841 0 1 870650 55140 14622 37141 37964 63995 63995 -0.021107435799422092 RSDFPLAA 8 Unmodified _RSDFPLAA_ 0 0 0 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7310485839844 2 438.732335 875.450116 NaN NaN NaN NaN NaN NaN NaN 27.577 1 27.531 27.031 28.031 -0.046408 0 0 0 0.95973 1 14216 14216 8.5933 0.68312 1 55141 434 37142 37965 63996 63996 0.007409426918911777 RSDMYRTF 8 Unmodified _RSDMYRTF_ 0 0 0 REV__nc|ENSG00000139151|Q86YW0-3|PLCZ1 REV__nc|ENSG00000139151|Q86YW0-3|PLCZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.1697998046875 3 359.171164 1074.49166 NaN NaN NaN NaN NaN NaN NaN 75.188 1 75.234 74.734 75.734 0.045959 0 0 0 0.97444 1 41459 41459 1.4819 0.51963 1 + 55142 20388 37143 37966 63997 63997 -0.04260244611077724 RSDQRRRD 8 Unmodified _RSDQRRRD_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.8743896484375 3 363.52711 1087.5595 1.2572 0.00045703 -0.44195 -0.00016066 0.81525 0.00029636 363.5273050825999 31.757 0.24388 28.061 27.947 28.19 -3.6958 26 13 3 0 0 0 8.7369 1 18002 18002 23.79 23.79 1 37326000 + 55143 18863 37144 37967 63998 63998 0.01922341363956548 RSEFDPLKAL 10 Unmodified _RSEFDPLKAL_ 0 0 0 REV__ENSG00000046604|ENST00000261590|DSG2 REV__ENSG00000046604|ENST00000261590|DSG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.5375671386719 3 392.552151 1174.63462 1.4666 0.00057571 -0.14639 -5.7466E-05 1.3202 0.00051825 392.5522088334702 37.16 0.30891 32.876 32.682 32.991 -4.2835 32 18 2 0 0 0 0.23946 1 21744 21744 3.5871 0.59182 1 8360700 + 55144 17218 37145 37968 63999 63999 0.05429086051822196 RSEKMDLIDR 10 Unmodified _RSEKMDLIDR_ 0 0 0 REV__ENSG00000107960|ENST00000224950|STN1 REV__ENSG00000107960|ENST00000224950|STN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8284301757812 2 631.829711 1261.64487 NaN NaN NaN NaN NaN NaN NaN 88.695 1 88.19 87.69 88.69 -0.50423 0 0 0 0.99514 1 48505 48505 1.1933 0.84271 1 + 55145 18589 37146 37969 64000 64000 0.024513257147191325 RSELISSDQHL 11 Unmodified _RSELISSDQHL_ 0 0 0 REV__nc|ENSG00000159788|O14924-2|RGS12 REV__nc|ENSG00000159788|O14924-2|RGS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8916015625 3 428.889603 1283.64698 NaN NaN NaN NaN NaN NaN NaN 53.828 1 53.761 53.261 54.261 -0.066936 0 0 0 0.94002 1 29217 29217 1.0136 0 1 + 55146 21500 37147 37970 64001 64001 0.016500777242072218 RSEMRALLL 9 Unmodified _RSEMRALLL_ 0 0 0 REV__ENSG00000008226|ENST00000308059|DLEC1 REV__ENSG00000008226|ENST00000308059|DLEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8163452148438 2 544.815876 1087.6172 1.2331 0.00067181 -0.67262 -0.00036646 0.56048 0.00030536 544.8156244986513 49.956 0.84201 49.907 49.531 50.373 -0.048824 122 41 4 0 0 0 0.15471 1 27071 27071 27.629 2.6378 1 8123300 + 55147 17021 37148 37971 64002 64002 0.07689467245177184 RSERREMF 8 Unmodified _RSERREMF_ 0 0 0 REV__ENST00000595545.5_1_19:40329790-40331059:-|nuORF REV__ENST00000595545.5_1_19:40329790-40331059:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.778564453125 2 555.777282 1109.54001 0.68977 0.00038336 -0.33116 -0.00018405 0.35861 0.00019931 555.7772272083015 86.912 0.41473 86.409 86.217 86.632 -0.50318 41 16 3 0 0 0 0.80624 1 47620 47620 2.8892 0 1 2554600 + 55148 29211 37149 37972 64003 64003 -0.010377509711588573 RSFHGQRQR 9 Unmodified _RSFHGQRQR_ 0 0 0 REV__ENSG00000135605|ENST00000381501|TEC REV__ENSG00000135605|ENST00000381501|TEC MSMS AL20221201_MKP_PDAC_01 4 391.2126159667969 3 391.211233 1170.61187 NaN NaN NaN NaN NaN NaN NaN 102.57 1 96.396 95.896 96.896 -6.1757 0 0 0 0.84737 1 68826 68826 0.96228 0 1 + 55149 20080 37150 37973 64004 64004 0.03338924497575135 RSFLSFFLGP 10 Unmodified _RSFLSFFLGP_ 0 0 0 REV__ENSG00000184922|ENST00000331495|FMNL1 REV__ENSG00000184922|ENST00000331495|FMNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8818359375 3 390.88172 1169.62333 1.1651 0.00045543 -2.7146 -0.0010611 -1.5494 -0.00060565 390.881939931427 93.717 0.88503 87.542 87.233 88.118 -6.1757 70 52 2 0 0 0 0.64628 1 62128 62128 5.0475 0 1 20227000 + 55150 23452 37151 37974 64005 64005 0.04530308748326206 RSFQGNQLY 9 Unmodified _RSFQGNQLY_ 0 0 0 REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E REV__nc|ENSG00000188089|Q3MJ16|PLA2G4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7777709960938 2 556.777805 1111.54106 0.21667 0.00012064 -0.13526 -7.5309E-05 0.081408 4.5326E-05 556.7779230171166 38.481 0.19078 38.194 38.048 38.239 -0.28687 15 8 2 0 0 0 0.2143 1 20273 20273 21.747 1.293 1 1167400 + 55151 23689 37152 37975 64006 64006 -0.010252133306039468 RSGFHEMAGV 10 Unmodified _RSGFHEMAGV_ 0 0 0 REV__ENST00000563335.1_1_16:74255215-74255323:+|nuORF REV__ENST00000563335.1_1_16:74255215-74255323:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.7598266601562 2 545.758558 1089.50256 NaN NaN NaN NaN NaN NaN NaN 29.138 1 25.836 25.336 26.336 -3.3016 0 0 0 0.47175 1 16332 16332 27.629 3.6082 1 + 55152 28873 37153 37976 64007 64007 -0.038608422367815365 RSGGRLPY 8 Unmodified _RSGGRLPY_ 0 0 0 nc|ENSG00000082805|Q8IUD2-5|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;ERC1|p.S687Pfs*4|1|0.4|ENSG00000082805|chr12:1183322-1183322|A/-|frameshift_variant;ENSG00000082805|ENST00000360905|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1 nc|ENSG00000082805|Q8IUD2-5|ERC1;ENSG00000082805|ENST00000360905|ERC1 ENSG00000082805|ENST00000360905|ERC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2518005371094 2 453.251226 904.487899 NaN NaN NaN NaN NaN NaN NaN 55.365 1 54.887 54.387 55.387 -0.47798 0 0 0 0.97444 1 30029 30029 2.8892 0 1 55153 16058;1353 37154 37977 64008 64008 0.031834536773772015 RSHHHYPDF 9 Unmodified _RSHHHYPDF_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-5|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.796630859375 2 598.273221 1194.53189 0.21229 0.00012701 -3.1861 -0.0019061 -2.9738 -0.0017791 598.271865016692 82.881 0.20123 76.705 76.589 76.79 -6.1757 14 10 2 0 0 0 0.209 1 54460 54460 7.2892 0.56607 1 5621200 55154 5667 37155 37978 64009 64009 -0.057595618962977824 RSHMVPGF 8 Unmodified _RSHMVPGF_ 0 0 0 ENST00000309100.7_1_11:65373278-65373527:-|nuORF ENST00000309100.7_1_11:65373278-65373527:-|nuORF ENST00000309100.7_1_11:65373278-65373527:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7346801757812 2 465.734354 929.454156 NaN NaN NaN NaN NaN NaN NaN 16.598 1 16.598 16.098 17.098 0 0 0 0 0.97444 1 8108 8108 0.79363 0 1 55155 11660 37156 37979 64010 64010 -0.013392910860261509 RSIYIYVF 8 Unmodified _RSIYIYVF_ 0 0 0 REV__ENST00000340857.3_1_22:38203206-38203248:+|nuORF REV__ENST00000340857.3_1_22:38203206-38203248:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2987670898438 2 530.794935 1059.57532 0.90472 0.00048022 0.4935 0.00026195 1.3982 0.00074217 530.7952044274472 99.97 0.31937 93.795 93.677 93.996 -6.1757 46 21 3 0 0 0 0.70131 1 66897 66897 17.087 1.2394 1 91424000 + 55156 25698 37157 37980 64011 64011 0.04791234828257984 RSKDKKILHI 10 Unmodified _RSKDKKILHI_ 0 0 0 nc|ENSG00000197444|Q9ULD0-2|OGDHL;ENSG00000197444|ENST00000374103|OGDHL;nc|ENSG00000197444|Q9ULD0-3|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL nc|ENSG00000197444|Q9ULD0-2|OGDHL MSMS AL20221201_MKP_PDAC_01 4 619.394775390625 2 619.390596 1236.76664 NaN NaN NaN NaN NaN NaN NaN 107.25 1 101.07 100.57 101.57 -6.1757 0 0 0 1.0019 1 71746 71746 0.45834 0.057624 1 55157 9955 37158 37981 64012 64012 0.15772735859422937 RSKKDQNQFI 10 Unmodified _RSKKDQNQFI_ 0 0 0 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 ENSG00000171448|ENST00000373656|ZBTB26 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5704956054688 3 421.898321 1262.67313 0.016341 6.8942E-06 0.10208 4.3066E-05 0.11842 4.9961E-05 421.89797538255675 15.782 0.086754 15.787 15.746 15.833 0.0050564 9 5 2 0 0 0 0.23986 1 7871 7871 2.086 0.34373 1 564860 55158 8098 37159 37982 64013 64013 0.052303916863365885 RSKKKKKKLLC 11 Unmodified _RSKKKKKKLLC_ 0 0 0 REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.4540405273438 2 680.452674 1358.89079 NaN NaN NaN NaN NaN NaN NaN 18.118 1 18.124 17.624 18.624 0.0060463 0 0 0 0.9435 1 9168 9168 0 0 1 + 55159 25739 37160 37983 64014 64014 0.22570490355269612 RSKRHRSRAL 10 Unmodified _RSKRHRSRAL_ 0 0 0 ENSG00000225899|ENST00000425520|FRG2B;ENSG00000172969|ENST00000308062|FRG2C ENSG00000225899|ENST00000425520|FRG2B ENSG00000225899|ENST00000425520|FRG2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8846435546875 2 633.884336 1265.75412 NaN NaN NaN NaN NaN NaN NaN 14.613 1 14.62 14.12 15.12 0.0073986 0 0 0 1.0061 1 7250 7250 0 0 1 55160 8275 37161 37984 64015 64015 0.13187137239765434 RSLDLDSIIA 10 Unmodified _RSLDLDSIIA_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2593383789062 2 551.808771 1101.60299 0.12687 7.0007E-05 -1.8083 -0.00099782 -1.6814 -0.00092782 551.8077023797832 65.773 0.14447 65.289 65.169 65.314 -0.48428 8 5 2 0 0 0 0.23343 1 35908 35908 10.8 0 1 1172600 + 55161 7667 37162 37985 64016 64016 0.05625093297885542 RSLKNDSDWQ 10 Unmodified _RSLKNDSDWQ_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.8708190917969 3 416.870431 1247.58946 NaN NaN NaN NaN NaN NaN NaN 20.646 1 20.674 20.174 21.174 0.028357 0 0 0 0.99514 1 10455 10455 0.50596 0.17668 1 + 55162 18337 37163 37986 64017 64017 -0.024427644813840743 RSLKRLWIWEQ 11 Unmodified _RSLKRLWIWEQ_ 0 0 0 ENST00000263377.6_1_19:15379807-15383627:-|nuORF ENST00000263377.6_1_19:15379807-15383627:-|nuORF ENST00000263377.6_1_19:15379807-15383627:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 758.4353637695312 2 757.93316 1513.85177 0.10854 8.2269E-05 0.94147 0.00071357 1.05 0.00079584 757.9337133865647 97.782 0.73703 97.539 97.123 97.86 -0.24277 65 33 2 0 0 0 0.74244 1 53334 53334 0.26902 0.26902 1 142580000 55163 11289 37164 37987 64018 64018 0.11539481325212364 RSLNPNRVTF 10 Unmodified _RSLNPNRVTF_ 0 0 0 ENSG00000117601|ENST00000367698|SERPINC1 ENSG00000117601|ENST00000367698|SERPINC1 ENSG00000117601|ENST00000367698|SERPINC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.8397827148438 2 602.333279 1202.652 0.82922 0.00049947 0.7439 0.00044807 1.5731 0.00094754 602.3300000426424 98.359 0.1948 92.183 92.072 92.267 -6.1757 24 12 3 0 0 0 0.44171 1 65208 65208 19.362 3.2128 1 25425000 55164 3324 37165 37988 64019 64019 0.05878426377466894 RSLWPLPLV 9 Unmodified _RSLWPLPLV_ 0 0 0 REV__ENSG00000204511|ENST00000376191|MCCD1 REV__ENSG00000204511|ENST00000376191|MCCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8296508789062 2 540.831852 1079.64915 0.48758 0.0002637 -0.57329 -0.00031005 -0.08571 -4.6355E-05 540.8314908560405 80.67 0.54351 80.727 80.518 81.062 0.057587 72 21 5 0 0 0 0.25681 1 44528 44528 19.257 2.1441 1 149940000 + 55165 24175 37166 37989 64020 64020 0.11251202990615639 RSMTGAAG 8 Unmodified _RSMTGAAG_ 0 0 0 REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.6820983886719 2 375.681788 749.349022 1.0704 0.00040211 0.96219 0.00036148 2.0325 0.00076359 375.68210285604533 44.252 0.50193 39.4 39.16 39.662 -4.852 61 35 2 0 0 0 0.79783 1 26948 26948 7.9102 2.6795 1 42307000 + 55166 26135 37167 37990 64021 64021 -0.035678322824537645 RSMTGAAG 8 Unmodified _RSMTGAAG_ 0 0 0 REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 375.681788 749.349022 0.03893 1.4625E-05 0.011163 4.1936E-06 0.050093 1.8819E-05 375.6817872837967 39.785 0.36009 39.488 39.33 39.69 -0.29716 0.037174 -0.00049427 NaN 7.9102 29 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4137600 + 55167 26135 37167 37990 -0.035678322824537645 RSMTGAAG 8 Unmodified _RSMTGAAG_ 0 0 0 REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF REV__ENST00000373162.5_1_1:36614922-36615066:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 375.681788 749.349022 0.26133 9.8176E-05 0.64268 0.00024144 0.904 0.00033962 375.68200831194156 39.452 0.24753 39.464 39.323 39.571 0.011452 0.013366 -1.9771E-05 NaN 7.9102 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3465100 + 55168 26135 37167 37990 -0.035678322824537645 RSNIVRQRK 9 Unmodified _RSNIVRQRK_ 0 0 0 REV__nc|ENSG00000066135|O75164-2|KDM4A REV__nc|ENSG00000066135|O75164-2|KDM4A MSMS AL20221201_MKP_PDAC_01 4 386.2388610839844 3 386.2389 1155.69487 NaN NaN NaN NaN NaN NaN NaN 39.672 1 35.221 34.721 35.721 -4.4509 0 0 0 0.83049 1 23579 23579 2.2828 0.5405 1 + 55169 17397 37168 37991 64022 64022 0.12325241225539685 RSNNFYMG 8 Unmodified _RSNNFYMG_ 0 0 0 ENSG00000149488|ENST00000358864|TMC2;nc|ENSG00000149488|Q8TDI7-4|TMC2 ENSG00000149488|ENST00000358864|TMC2 ENSG00000149488|ENST00000358864|TMC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7182922363281 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 0.91228 1 0.83899 0.33899 1.339 -0.073289 0 0 0 0.97444 1 457 457 0.79363 0.10326 1 55170 6012 37169 37992 64023 64023 -0.07096489190928423 RSPDGFQYQ 9 Unmodified _RSPDGFQYQ_ 0 0 0 REV__ENSG00000177508|ENST00000329734|IRX3 REV__ENSG00000177508|ENST00000329734|IRX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2991333007812 3 366.505201 1096.49377 3.2079 0.0011757 -2.7424 -0.0010051 0.46551 0.00017061 366.8381754375969 97.735 0.27616 97.716 97.651 97.927 -0.018188 16 9 3 0 0 0 0.21846 1 54315 54315 2.086 2.0027 1 758680 + 55171 22988 37170 37993 64024 64024 -0.05061492601635109 RSPDGFQYQ 9 Unmodified _RSPDGFQYQ_ 0 0 0 REV__ENSG00000177508|ENST00000329734|IRX3 REV__ENSG00000177508|ENST00000329734|IRX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.505201 1096.49377 0.34125 0.00012507 -3.5743 -0.00131 -3.233 -0.0011849 366.503774527483 98.003 0.43495 97.76 97.645 98.08 -0.24277 0.021874 -0.00012425 NaN 2.086 31 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2485500 + 55172 22988 37170 37993 -0.05061492601635109 RSPLLCHSLRK 11 Unmodified _RSPLLCHSLRK_ 0 0 0 ENSG00000154079|ENST00000370474|SDHAF4 ENSG00000154079|ENST00000370474|SDHAF4 ENSG00000154079|ENST00000370474|SDHAF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5909423828125 3 437.255563 1308.74486 0.78613 0.00034374 0.69444 0.00030365 1.4806 0.00064738 437.2558307343925 43.001 0.65643 42.985 42.698 43.355 -0.015667 72 30 3 0 0 0 0.72131 1 23126 23126 2.2527 0.79761 1 9149700 55173 6293 37171 37994 64025 64025 0.10283607839187425 RSPRGILG 8 Unmodified _RSPRGILG_ 0 0 0 ENST00000298310.9_1_14:50319457-50319715:-|nuORF ENST00000298310.9_1_14:50319457-50319715:-|nuORF ENST00000298310.9_1_14:50319457-50319715:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2631225585938 2 428.261594 854.508634 0.12481 5.345E-05 0.62812 0.000269 0.75292 0.00032245 428.26188116100644 78.997 0.52003 78.997 78.762 79.282 0 53 23 3 0 0 0 0.81107 3 43800 43800;43898;43998 0 0 1 3021000 55174 11533 37172 37995 64026;64027;64028 64026 0.07556044057059808 RSPRLPLRKP 10 Unmodified _RSPRLPLRKP_ 0 0 0 ENSG00000130338|ENST00000367097|TULP4;nc|ENSG00000130338|Q9NRJ4-2|TULP4 ENSG00000130338|ENST00000367097|TULP4 ENSG00000130338|ENST00000367097|TULP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3929443359375 2 610.390931 1218.76731 1.4811 0.00090404 1.0061 0.00061411 2.4872 0.0015181 610.3915243960644 104.28 0.14035 98.105 98.014 98.154 -6.1757 16 9 2 0 0 0 0.71276 1 69840 69840 1.4819 0 1 29771000 55175 4204 37173 37996 64029 64029 0.16667575299129567 RSPRRTRPRFP 11 Unmodified _RSPRRTRPRFP_ 0 0 0 REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF REV__ENST00000372441.1_1_6:43477335-43478064:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.5392456054688 4 357.21291 1424.82253 1.8097 0.00064646 -0.95735 -0.00034198 0.85238 0.00030448 357.4633146715893 20.122 0.37532 17.466 17.22 17.596 -2.6564 60 24 3 0 0 0 0.30587 1 10632 10632 1.2148 0.76031 1 11679000 + 55176 26113 37174 37997 64030 64030 0.12711381819576673 RSQASSTDDF 10 Unmodified _RSQASSTDDF_ 0 0 0 REV__ENST00000587361.1_1_19:38799650-38806369:-|nuORF REV__ENST00000587361.1_1_19:38799650-38806369:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.2040710449219 3 371.831753 1112.47343 0.7327 0.00027244 1.0151 0.00037744 1.7478 0.00064988 371.8326119592882 16.464 0.16081 13.907 13.835 13.995 -2.557 35 24 2 0 0 0 0.23745 1 8581 8581 1.4551 0 1 1745400 + 55177 22233 37175 37998 64031 64031 -0.0783070805209718 RSQPGFPHWV 10 Unmodified _RSQPGFPHWV_ 0 0 0 ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF ENST00000508198.5_1_4:152330433-152375872:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.811279296875 2 605.809439 1209.60433 0.064386 3.9006E-05 2.2163 0.0013427 2.2807 0.0013817 606.3123022015802 24.185 0.14035 24.183 24.114 24.254 -0.0016766 10 6 2 0 0 0 0.69377 1 12370 12370 3.5965 0.31518 1 1480700 55178 14555 37176 37999 64032 64032 0.007907721772653531 RSQTLDAHQD 10 Unmodified _RSQTLDAHQD_ 0 0 0 REV__nc|ENSG00000095059|P49366-2|DHPS REV__nc|ENSG00000095059|P49366-2|DHPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2783813476562 2 585.778533 1169.54251 -0.39849 -0.00023343 -1.9827 -0.0011614 -2.3812 -0.0013949 586.2784395834819 25.073 0.11174 25.073 25.036 25.147 0 7 5 2 0 0 0 0.63399 1 12848 12848 9.3831 2.66 1 419020 + 55179 17934 37177 38000 64033 64033 -0.03547624032535168 RSRARAPPGR 10 Unmodified _RSRARAPPGR_ 0 0 0 REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF REV__ENST00000592467.1_1_19:1261169-1261487:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5564270019531 3 375.223362 1122.64826 -0.10196 -3.8259E-05 -2.0679 -0.00077594 -2.1699 -0.0008142 375.55683205233146 30.316 0.26961 30.347 30.207 30.477 0.030104 34 11 4 0 0 0 0.68209 1 15832 15832 2.6312 0 1 3509600 + 55180 29178 37178 38001 64034 64034 0.09183801394260627 RSRDETPLCTI 11 Unmodified _RSRDETPLCTI_ 0 0 0 nc|ENSG00000049618|Q8NFD5-1|ARID1B;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B nc|ENSG00000049618|Q8NFD5-1|ARID1B MSMS AL20221201_MKP_PDAC_01 4 430.8883056640625 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 48.347 1 43.113 42.613 43.613 -5.2339 0 0 0 0.93933 1 30104 30104 1.2148 0.20126 1 55181 712 37179 38002 64035 64035 0.006550218521169882 RSRDMNLCL 9 Unmodified _RSRDMNLCL_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2711181640625 2 554.273518 1106.53248 NaN NaN NaN NaN NaN NaN NaN 68.262 1 68.262 67.762 68.762 0 0 0 0 0.29524 1 38055 38055 25.399 0 1 + 55182 19845 37180 38003 64036 64036 -0.016522265631238042 RSREKRRRRRR 11 Unmodified _RSREKRRRRRR_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.5033569335938 2 806.501795 1610.98904 NaN NaN NaN NaN NaN NaN NaN 98.227 1 98.033 97.533 98.533 -0.19321 0 0 0 0.9435 1 53647 53647 0 0 1 55183 3951 37181 38004 64037 64037 0.20798247767993416 RSREKRRRRRR 11 Unmodified _RSREKRRRRRR_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MSMS AL20221201_MKP_PDAC_01 4 806.5028686523438 2 806.501795 1610.98904 NaN NaN NaN NaN NaN NaN NaN 104.93 1 98.753 98.253 99.253 -6.1757 0 0 0 0.94313 1 70239 70239 0.26902 0.26902 1 55184 3951 37181 38004 64038 64038 0.20798247767993416 RSREKRRRRRR 11 Unmodified _RSREKRRRRRR_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MSMS AL20221201_MKP_PDAC_01 4 538.0042724609375 3 538.003622 1610.98904 NaN NaN NaN NaN NaN NaN NaN 109.33 1 103.15 102.65 103.65 -6.1757 0 0 0 0.9435 1 73017 73017 0 0 1 55185 3951 37181 38004 64039 64039 0.20798247767993416 RSRFPLGF 8 Unmodified _RSRFPLGF_ 0 0 0 ENST00000527092.5_1_11:66242516-66247588:-|nuORF ENST00000527092.5_1_11:66242516-66247588:-|nuORF ENST00000527092.5_1_11:66242516-66247588:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2759094238281 2 490.277244 978.539935 0.13409 6.5743E-05 -1.4814 -0.00072627 -1.3473 -0.00066053 490.27712920637043 61.765 0.15738 61.765 61.641 61.798 0 12 6 2 0 0 0 0.80143 1 34434 34434 5.7604 1.0044 1 580340 55186 14827 37182 38005 64040 64040 0.04980617091143813 RSRKGTLV 8 Unmodified _RSRKGTLV_ 0 0 0 REV__FAM53A|p.S266T|1|0.14|ENSG00000174137|chr4:1655063-1655063|C/G|missense_variant REV__FAM53A|p.S266T|1|0.14|ENSG00000174137|chr4:1655063-1655063|C/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7884521484375 2 458.787976 915.561398 0.53434 0.00024515 0.30115 0.00013816 0.83549 0.00038331 458.78809007429464 81.918 0.38487 81.918 81.782 82.167 0 35 21 2 0 0 0 0.81107 1 45438 45438 0 0 1 1120800 + 55187 29343 37183 38006 64041 64041 0.10024002119871511 RSRKLLQR 8 Unmodified _RSRKLLQR_ 0 0 0 REV__ENSG00000167604|ENST00000606253|NFKBID REV__ENSG00000167604|ENST00000606253|NFKBID MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8404541015625 2 528.841074 1055.66759 NaN NaN NaN NaN NaN NaN NaN 18.963 1 18.969 18.469 19.469 0.0060463 0 0 0 0.97444 1 9630 9630 0.69038 0 1 + 55188 22225 37184 38007 64042 64042 0.14198757685176133 RSRKWRLLRRI 11 Unmodified _RSRKWRLLRRI_ 0 0 0 ENST00000309117.10_1_21:38639566-38639725:-|nuORF ENST00000309117.10_1_21:38639566-38639725:-|nuORF ENST00000309117.10_1_21:38639566-38639725:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 770.495361328125 2 770.494585 1538.97462 NaN NaN NaN NaN NaN NaN NaN 86.774 1 86.774 86.274 87.274 0 0 0 0 0.9435 1 48058 48058 0 0 1 55189 11661 37185 38008 64043 64043 0.22668782567143353 RSRKWRLLRRI 11 Unmodified _RSRKWRLLRRI_ 0 0 0 ENST00000309117.10_1_21:38639566-38639725:-|nuORF ENST00000309117.10_1_21:38639566-38639725:-|nuORF ENST00000309117.10_1_21:38639566-38639725:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.99853515625 3 513.998815 1538.97462 -0.39151 -0.00020123 1.1349 0.00058334 0.74341 0.00038211 513.9990668874244 103.79 0.13689 103.75 103.69 103.83 -0.048737 9 5 3 0 0 0 0.7453 1 57652 57652 0 0 1 3836000 55190 11661 37185 38008 64044 64044 0.22668782567143353 RSRQCPPIV 9 Unmodified _RSRQCPPIV_ 0 0 0 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2916870117188 2 528.292568 1054.57058 NaN NaN NaN NaN NaN NaN NaN 31.72 1 31.72 31.22 32.22 0 0 0 0 0.7453 1 16534 16534 7.9102 0 1 + 55191 20705 37186 38009 64045 64045 0.04548027413852651 RSRQHKTF 8 Unmodified _RSRQHKTF_ 0 0 0 ENST00000418970.6_1_2:7053778-7054444:-|nuORF ENST00000418970.6_1_2:7053778-7054444:-|nuORF ENST00000418970.6_1_2:7053778-7054444:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2951049804688 2 530.293956 1058.57336 NaN NaN NaN NaN NaN NaN NaN 96.226 1 96.226 95.726 96.726 0 0 0 0 0.97444 1 53177 53177 2.5775 0 1 55192 13079 37187 38010 64046 64046 0.046416188630246324 RSRRARRPLL 10 Unmodified _RSRRARRPLL_ 0 0 0 ENST00000546342.5_1_8:30585144-30585228:-|nuORF ENST00000546342.5_1_8:30585144-30585228:-|nuORF ENST00000546342.5_1_8:30585144-30585228:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.9105224609375 2 640.910353 1279.80615 NaN NaN NaN NaN NaN NaN NaN 92.389 1 92.389 91.889 92.889 0 0 0 0 1.0061 1 51088 51088 0 0 1 55193 15103 37188 38011 64047 64047 0.1774430065352135 RSRRRRKAAPP 11 Unmodified _RSRRRRKAAPP_ 0 0 0 REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.9187622070312 2 675.91871 1349.82287 NaN NaN NaN NaN NaN NaN NaN 15.96 1 15.965 15.465 16.465 0.0050564 0 0 0 0.9435 1 7979 7979 0 0 1 + 55194 26533 37189 38012 64048 64048 0.16194801539472792 RSRSRGGRRRR 11 Unmodified _RSRSRGGRRRR_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MSMS AL20221201_MKP_PDAC_01 4 700.4199829101562 2 700.41994 1398.82533 NaN NaN NaN NaN NaN NaN NaN 15.907 1 13.35 12.85 13.85 -2.557 0 0 0 0.9435 1 8203 8203 0 0 1 55195 2915 37190 38013 64049 64049 0.14186649997122913 RSRWRRPWRVR 11 Unmodified _RSRWRRPWRVR_ 0 0 0 ENST00000481661.1_1_14:59931594-59931975:-|nuORF ENST00000481661.1_1_14:59931594-59931975:-|nuORF ENST00000481661.1_1_14:59931594-59931975:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.9700927734375 2 805.971808 1609.92906 NaN NaN NaN NaN NaN NaN NaN 94.538 1 94.553 94.053 95.053 0.014244 0 0 0 0.9435 1 52536 52536 0 0 1 55196 14086 37191 38014 64050 64050 0.14849557104730593 RSSFSLLWHK 10 Unmodified _RSSFSLLWHK_ 0 0 0 REV__ENST00000515803.5_1_5:16711340-16738347:-|nuORF REV__ENST00000515803.5_1_5:16711340-16738347:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.8983764648438 3 420.899773 1259.67749 NaN NaN NaN NaN NaN NaN NaN 20.933 1 20.933 20.433 21.433 0 0 0 0 0.99897 1 10559 10559 0.77653 0.078866 1 + 55197 28222 37192 38015 64051 64051 0.0580390089987759 RSSKQSEPF 9 Unmodified _RSSKQSEPF_ 0 0 0 REV__ENSG00000198824|ENST00000361283|CHAMP1 REV__ENSG00000198824|ENST00000361283|CHAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2669677734375 2 533.269813 1064.52507 0.18518 9.8752E-05 -2.2211 -0.0011844 -2.0359 -0.0010857 533.2673140843918 71.971 0.38151 71.971 71.756 72.137 0 28 15 3 0 0 0 0.32235 1 40113 40113 16.149 2.2431 1 1804700 + 55198 24068 37193 38016 64052 64052 -0.004609195675357114 RSSLHAVF 8 Unmodified _RSSLHAVF_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.7542114257812 2 458.753601 915.49265 0.51258 0.00023515 1.4434 0.00066219 1.956 0.00089734 458.75412923046036 62.729 0.63953 62.707 62.525 63.165 -0.021614 70 32 3 0 0 0 0.78849 1 34261 34261 9.3474 2.9933 1 13569000 55199 16253 37194 38017 64053 64053 0.03152337820142748 RSSLHAVF 8 Unmodified _RSSLHAVF_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 458.753601 915.49265 0.51225 0.000235 1.5082 0.00069189 2.0205 0.00092689 458.7541473215985 62.878 0.58165 62.878 62.589 63.17 0 0.11869 -3.3909E-06 NaN 9.3474 43 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2471100 55200 16253 37194 38017 0.03152337820142748 RSSLHAVF 8 Unmodified _RSSLHAVF_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 458.753601 915.49265 0.25126 0.00011526 1.8331 0.00084092 2.0843 0.00095619 458.7542628941635 63.179 0.27869 62.693 62.562 62.841 -0.48617 -0.066327 0.00029467 NaN 9.3474 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 883630 55201 16253 37194 38017 0.03152337820142748 RSSLITHQLI 10 Unmodified _RSSLITHQLI_ 0 0 0 nc|ENSG00000167555|Q3MIS6-2|ZNF528;ENST00000598479.1_1_19:52918345-52919989:+|nuORF;ENSG00000167555|ENST00000360465|ZNF528 nc|ENSG00000167555|Q3MIS6-2|ZNF528 nc|ENSG00000167555|Q3MIS6-2|ZNF528 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9006652832031 3 389.899662 1166.67716 0.16077 6.2685E-05 1.6817 0.00065569 1.8425 0.00071838 389.90034486248663 27.534 0.10481 27.562 27.513 27.618 0.028664 6 4 2 0 0 0 0.57893 1 14322 14322 14.957 4.6419 1 2158400 55202 7631 37195 38018 64054 64054 0.1004848118004702 RSWRWRWRLL 10 Unmodified _RSWRWRWRLL_ 0 0 0 ENST00000414613.1_1_2:61164392-61164575:-|nuORF ENST00000414613.1_1_2:61164392-61164575:-|nuORF ENST00000414613.1_1_2:61164392-61164575:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 758.4356079101562 2 757.933828 1513.8531 0.10854 8.2269E-05 0.059197 4.4867E-05 0.16774 0.00012714 757.9337133865647 97.782 0.73703 97.539 97.123 97.86 -0.24277 65 33 2 0 0 0 0.72607 4 53231 53231;53283;53415;53441 0 0 1 142580000 55203 13015 37196 38019 64055;64056;64057;64058 64055 0.11673160204645683 RSWTVSPFSVM 11 Unmodified _RSWTVSPFSVM_ 0 0 0 REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8853759765625 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 45.934 1 45.934 45.434 46.434 0 0 0 0 0.93737 1 25075 25075 4.4062 0.81909 1 + 55204 25141 37197 38020 64059 64059 -0.0027487130862482445 RSWTVSPFSVM 11 Unmodified _RSWTVSPFSVM_ 0 0 0 REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF REV__ENST00000271843.8_1_1:153946752-153946992:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.885498046875 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 46.181 1 46.181 45.681 46.681 0 0 0 0 0.93737 1 25229 25229 4.4062 0 1 + 55205 25141 37197 38020 64060 64060 -0.0027487130862482445 RSWWPRWWWAP 11 Unmodified _RSWWPRWWWAP_ 0 0 0 ENST00000355943.7_1_5:110074744-110074849:+|nuORF ENST00000355943.7_1_5:110074744-110074849:+|nuORF ENST00000355943.7_1_5:110074744-110074849:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.3995971679688 2 807.399287 1612.78402 NaN NaN NaN NaN NaN NaN NaN 61.066 1 61.066 60.566 61.566 0 0 0 0 0.9435 1 34054 34054 0 0 1 55206 12084 37198 38021 64061 64061 0.00214076185079648 RSYLLYSQF 9 Unmodified _RSYLLYSQF_ 0 0 0 REV__ENSG00000188032|ENST00000548523|C19orf67 REV__ENSG00000188032|ENST00000548523|C19orf67 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.7437744140625 3 392.873113 1175.59751 1.3852 0.00054422 2.886 0.0011338 4.2712 0.001678 393.2084393224718 20.341 0.12302 17.648 17.582 17.705 -2.693 9 6 2 0 0 0 0.21473 1 10832 10832 2.4985 0 1 2325700 + 55207 23682 37199 38022 64062 64062 0.016734145060127048 RSYNMRFVF 9 Unmodified _RSYNMRFVF_ 0 0 0 REV__ENSG00000186815|ENST00000335509|TPCN1 REV__ENSG00000186815|ENST00000335509|TPCN1 MSMS AL20221201_MKP_PDAC_01 4 407.2064208984375 3 407.206209 1218.5968 NaN NaN NaN NaN NaN NaN NaN 88.927 1 82.752 82.252 83.252 -6.1757 0 0 0 0.82739 1 58682 58682 2.4985 0.57098 1 + 55208 23598 37200 38023 64063 64063 -0.0037570341467016988 RSYQLRDSL 9 Unmodified _RSYQLRDSL_ 0 0 0 REV__ENSG00000104951|ENST00000391826|IL4I1 REV__ENSG00000104951|ENST00000391826|IL4I1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.872802734375 3 379.871883 1136.59382 1.8475 0.00070183 0.98687 0.00037488 2.8344 0.0010767 379.87225236561204 33.811 0.50802 29.825 29.589 30.097 -3.9853 59 27 3 0 0 0 0.34999 1 19433 19433 14.405 3.8779 1 17910000 + 55209 18390 37201 38024 64064 64064 0.030987447321649597 RSYYSGAPWPL 11 Unmodified _RSYYSGAPWPL_ 0 0 0 REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8849487304688 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 103.45 1 103.45 102.95 103.95 0 0 0 0 0.9428 1 57030 57030 0.50596 0.051438 1 + 55210 28014 37202 38025 64065 64065 -0.006117980909493781 RTALFEKVL 9 Unmodified _RTALFEKVL_ 0 0 0 ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1 ENST00000473458.5_1_22:25240737-25320238:+|nuORF ENST00000473458.5_1_22:25240737-25320238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.5545959472656 3 359.553603 1075.63898 2.2804 0.00081993 -0.71931 -0.00025863 1.5611 0.0005613 359.5534182951907 47.661 0.51501 42.427 42.142 42.657 -5.2339 75 30 3 0 0 0 0.42 1 29474 29474 11.518 0.61892 1 28041000 55211 7564 37203 38026 64066 64066 0.1041859526535518 RTALHRACL 9 Carbamidomethyl (C) _RTALHRAC(Carbamidomethyl (C))L_ RTALHRAC(1)L RTALHRAC(50)L 0 1 0 ENSG00000148677|ENST00000371697|ANKRD1 ENSG00000148677|ENST00000371697|ANKRD1 ENSG00000148677|ENST00000371697|ANKRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5381774902344 3 366.53807 1096.59238 1.0741 0.00039371 -1.0434 -0.00038245 0.03071 1.1256E-05 366.5377263273629 17.484 0.22634 14.898 14.781 15.007 -2.5866 117 47 3 0 0 0 0.040337 1 9110 9110 49.742 31.879 1 17578000 55212 5953 37204 38027 64067 64067 599 0.04794832162428975 RTCEECNFKV 10 2 Carbamidomethyl (C) _RTC(Carbamidomethyl (C))EEC(Carbamidomethyl (C))NFKV_ RTC(1)EEC(1)NFKV RTC(78)EEC(78)NFKV 0 2 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ENST00000584374.1_1_17:73727904-73735976:+|nuORF nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 448.200927734375 3 448.200795 1341.58056 NaN NaN NaN NaN NaN NaN NaN 29.164 1 25.863 25.363 26.363 -3.3016 0 0 0 0.018158 1 16348 16348 78.116 13.255 1 55213 4412 37205 38028 64068 64068 454;455 -0.07657197433718466 RTCRLEMLL 9 Unmodified _RTCRLEMLL_ 0 0 0 nc|ENSG00000290676|Q6UXR4|SERPINA13P nc|ENSG00000290676|Q6UXR4|SERPINA13P nc|ENSG00000290676|Q6UXR4|SERPINA13P MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.1743469238281 3 378.875583 1133.60492 1.4564 0.00055181 1.4317 0.00054245 2.8882 0.0010943 379.21034890323557 64.871 0.29366 58.695 58.509 58.803 -6.1757 18 16 2 0 0 0 0.21473 1 42074 42074 2.4985 0.21571 1 6275200 55214 16635 37206 38029 64069 64069 0.04346107510468755 RTCRRKYP 8 Unmodified _RTCRRKYP_ 0 0 0 nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1;nc|ENSG00000185658|Q9NSI6|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2021789550781 3 360.534549 1078.58182 0.033504 1.2079E-05 0.13517 4.8732E-05 0.16867 6.0812E-05 360.53371363823845 20.242 0.25719 20.253 20.069 20.326 0.010553 24 13 3 0 0 0 8.7369 1 10328 10328 1.6526 0 1 558650 55215 9395 37207 38030 64070 64070 0.04566849508000814 RTDDLVYL 8 Unmodified _RTDDLVYL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000522245.1_1_8:27311571-27312006:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7636413574219 2 497.763832 993.513111 0.72351 0.00036014 -0.021708 -1.0805E-05 0.7018 0.00034933 497.7637203568473 53.956 0.40316 53.956 53.77 54.173 0 60 18 5 0 0 0 0.40602 2 29988 29877;29988 43.858 3.901 1 24043000 55216 3552 37208 38031 64071;64072 64072 0.01609463689283075 RTDDLVYL 8 Unmodified _RTDDLVYL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000522245.1_1_8:27311571-27312006:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7647399902344 2 497.763832 993.513111 1.0744 0.00053479 0.43028 0.00021418 1.5047 0.00074897 497.7640853498386 60.39 0.39426 54.275 54.083 54.478 -6.1147 35 20 2 0 0 0 0.25522 2 38815 38815;38968 61.357 8.3718 1 29491000 55217 3552 37208 38031 64073;64074 64073 0.01609463689283075 RTDPVPVTI 9 Unmodified _RTDPVPVTI_ 0 0 0 nc|ENSG00000170291|Q8TE02-2|ELP5;nc|ENSG00000170291|Q8TE02-3|ELP5;ENSG00000170291|ENST00000396628|ELP5;nc|ENSG00000170291|Q8TE02-1|ELP5 nc|ENSG00000170291|Q8TE02-2|ELP5 nc|ENSG00000170291|Q8TE02-2|ELP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2859802246094 2 499.287474 996.560395 0.37622 0.00018784 -0.72124 -0.00036011 -0.34502 -0.00017226 499.2870758315391 48.11 0.23429 48.11 47.978 48.212 0 18 11 2 0 0 0 0.044296 1 26344 26344 47.594 11.467 1 2702400 55218 16377 37209 38032 64075 64075 0.06197742960296182 RTDPVSEAL 9 Unmodified _RTDPVSEAL_ 0 0 0 ENST00000484221.1_1_1:160721124-160721349:+|nuORF ENST00000484221.1_1_1:160721124-160721349:+|nuORF ENST00000484221.1_1_1:160721124-160721349:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2602233886719 2 494.258914 986.503274 NaN NaN NaN NaN NaN NaN NaN 28.946 1 28.946 28.446 29.446 0 0 0 0 0.27852 1 14975 14975 26.268 0 1 55219 14148 37210 38033 64076 64076 0.009482756839133799 RTDTYVKL 8 Unmodified _RTDTYVKL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.279541015625 2 498.279649 994.544745 1.4493 0.00072217 -1.1057 -0.00055096 0.34361 0.00017121 498.2791915781261 33.799 0.18221 29.813 29.676 29.858 -3.9853 14 9 2 0 0 0 0.50364 1 19400 19400 34.402 3.7652 1 4595100 55220 7618 37211 38034 64077 64077 0.04725456443236453 RTEENLTSVMS 11 Unmodified _RTEENLTSVMS_ 0 0 0 ENST00000396408.7_1_19:53912306-53912564:+|nuORF ENST00000396408.7_1_19:53912306-53912564:+|nuORF ENST00000396408.7_1_19:53912306-53912564:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 423.2601928710938 3 422.871332 1265.59217 1.4474 0.00061204 -1.2104 -0.00051183 0.23698 0.00010021 422.8709155850306 21.104 0.2837 18.411 18.205 18.489 -2.693 25 15 2 0 0 0 0.30286 1 11219 11219 2.2527 0.16876 1 2790000 55221 12794 37212 38035 64078 64078 -0.0300067713876615 RTFFYWRLRRL 11 Unmodified _RTFFYWRLRRL_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.6920776367188 2 807.462419 1612.91028 NaN NaN NaN NaN NaN NaN NaN 70.236 1 70.236 69.736 70.736 0 0 0 0 0.94301 1 39135 39135 0.35063 0.35063 1 55222 10934 37213 38036 64079 64079 0.12834582690334173 RTFNYIEQVS 10 Unmodified _RTFNYIEQVS_ 0 0 0 REV__ENSG00000189299|ENST00000339140|FOXR2 REV__ENSG00000189299|ENST00000339140|FOXR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.8815612792969 3 419.547177 1255.6197 -0.017011 -7.1369E-06 -0.12675 -5.3177E-05 -0.14376 -6.0314E-05 419.8819066155485 16.571 0.17285 16.577 16.457 16.63 0.0050564 12 8 3 0 0 0 0.7191 1 8337 8337 0.77653 0 1 701210 + 55223 23776 37214 38037 64080 64080 0.0021159418377010297 RTGAGRACA 9 Unmodified _RTGAGRACA_ 0 0 0 REV__ENST00000381939.1_1_20:814482-825421:+|nuORF REV__ENST00000381939.1_1_20:814482-825421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.43701171875 1 862.431195 861.423919 0.069681 6.0095E-05 -0.33508 -0.00028898 -0.2654 -0.00022889 862.4309394656971 69.792 0.25104 69.792 69.636 69.887 0 26 11 3 0 0 0 0.62242 1 38904 38904 0 0 1 1532900 + 55224 26339 37215 38038 64081 64081 -0.012336497512478672 RTGEVLRI 8 Unmodified _RTGEVLRI_ 0 0 0 ENST00000446716.5_1_2:220075515-220081188:-|nuORF;nc|ENSG00000115657|Q9NP58-4|ABCB6;ENSG00000115657|ENST00000265316|ABCB6 ENST00000446716.5_1_2:220075515-220081188:-|nuORF ENST00000446716.5_1_2:220075515-220081188:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7901306152344 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.46494 1 63351 63351 38.151 0 1 250360000 55225 3150 37216 38039 64082 64082 0.08748582399982752 RTGFLNPV 8 Unmodified _RTGFLNPV_ 0 0 0 REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2561340332031 2 452.255977 902.497401 0.27393 0.00012389 -0.27618 -0.00012491 -0.0022565 -1.0205E-06 452.25588952977506 40.197 0.32112 40.197 40.049 40.37 0 26 15 2 0 0 0 0.52622 1 21574 21574 32.305 7.6316 1 5681300 + 55226 26259 37217 38040 64083 64083 0.04225221962906289 RTGFLNPV 8 Unmodified _RTGFLNPV_ 0 0 0 REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2571716308594 2 452.255977 902.497401 0.57815 0.00026147 -0.12106 -5.4749E-05 0.45709 0.00020672 452.25632855525356 45.1 0.33528 40.248 40.021 40.357 -4.852 23 21 2 0 0 0 0.57045 1 27573 27573 28.487 3.813 1 13599000 + 55227 26259 37217 38040 64084 64084 0.04225221962906289 RTGFLNPV 8 Unmodified _RTGFLNPV_ 0 0 0 REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF REV__ENST00000378078.4_1_9:35755401-35755560:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 452.255977 902.497401 0.27393 0.00012389 -0.27618 -0.00012491 -0.0022565 -1.0205E-06 452.25588952977506 40.197 0.32112 40.197 40.049 40.37 0 -0.0094018 -0.00071729 NaN 32.305 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5681300 + 55228 26259 37217 38040 0.04225221962906289 RTGQVGPTMH 10 Unmodified _RTGQVGPTMH_ 0 0 0 ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV ENSG00000172927|ENST00000441339|MYEOV MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2738037109375 2 542.271832 1082.52911 NaN NaN NaN NaN NaN NaN NaN 78.747 1 78.747 78.247 79.247 0 0 0 0 0.99514 1 43754 43754 1.1933 0.50296 1 55229 8270 37218 38041 64085 64085 -0.008851533454389937 RTHHRWYLCHF 11 Unmodified _RTHHRWYLCHF_ 0 0 0 ENSG00000136867|ENST00000259392|SLC31A2 ENSG00000136867|ENST00000259392|SLC31A2 ENSG00000136867|ENST00000259392|SLC31A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.2552490234375 3 519.254445 1554.7415 -0.21312 -0.00011067 3.5488 0.0018427 3.3357 0.0017321 519.2562668457498 31.52 0.21608 31.55 31.432 31.648 0.030104 17 9 3 0 0 0 0.73992 1 16543 16543 0.50596 0.051438 1 2175000 55230 4871 37219 38042 64086 64086 -0.013676422148137135 RTHPGHPP 8 Unmodified _RTHPGHPP_ 0 0 0 ENST00000320634.7_1_12:50264425-50282971:-|nuORF ENST00000320634.7_1_12:50264425-50282971:-|nuORF ENST00000320634.7_1_12:50264425-50282971:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7359008789062 2 449.735743 897.456933 NaN NaN NaN NaN NaN NaN NaN 15.728 1 15.714 15.214 16.214 -0.014067 0 0 0 0.97444 1 7734 7734 0.79363 0 1 55231 11764 37220 38043 64087 64087 0.004103003631257707 RTHSRKKP 8 Unmodified _RTHSRKKP_ 0 0 0 ENSG00000198429|ENST00000429654|ZNF69;nc|ENSG00000197647|Q8N7K0-2|ZNF433;ENSG00000197647|ENST00000550507|ZNF433;nc|ENSG00000197647|Q8N7K0|ZNF433 ENSG00000198429|ENST00000429654|ZNF69 ENSG00000198429|ENST00000429654|ZNF69 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.80419921875 2 505.304324 1008.5941 0.70164 0.00035454 0.63453 0.00032063 1.3362 0.00067517 505.30482725351874 46.126 0.26093 46.098 45.905 46.166 -0.028011 14 11 2 0 0 0 8.7369 1 24807 24807 12.532 2.3482 1 1743900 55232 10090 37221 38044 64088 64088 0.0901420924269587 RTHTLILAL 9 Unmodified _RTHTLILAL_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3275756835938 2 519.326934 1036.63931 0.69238 0.00035957 -0.052629 -2.7332E-05 0.63975 0.00033224 519.326899478107 71.648 0.38189 71.687 71.511 71.893 0.039024 58 17 4 0 0 0 0.0090948 2 39408 39408;39509 85.272 14.138 1 24052000 + 55233 20834 37222 38045 64089;64090 64089 0.12246014985225884 RTHTLILAL 9 Unmodified _RTHTLILAL_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MSMS AL20221201_MKP_PDAC_01 4 519.3269653320312 2 519.326934 1036.63931 NaN NaN NaN NaN NaN NaN NaN 90.234 1 84.058 83.558 84.558 -6.1757 0 0 0 0.025979 1 59590 59590 71.134 3.0529 1 + 55234 20834 37222 38045 64091 64091 0.12246014985225884 RTHTLILAL 9 Unmodified _RTHTLILAL_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MSMS AL20221201_MKP_PDAC_01 4 519.3271484375 2 519.326934 1036.63931 NaN NaN NaN NaN NaN NaN NaN 90.411 1 84.235 83.735 84.735 -6.1757 0 0 0 0.014983 1 59720 59720 85.272 14.138 1 + 55235 20834 37222 38045 64092 64092 0.12246014985225884 RTHTLILAL 9 Unmodified _RTHTLILAL_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.326934 1036.63931 0.50018 0.00025976 0.1419 7.3693E-05 0.64208 0.00033345 519.3271666553302 72.211 0.17796 71.735 71.615 71.793 -0.4761 0.02397 0.0001612 NaN 85.272 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 652380 + 55236 20834 37222 38045 0.12246014985225884 RTHTLILAL 9 Unmodified _RTHTLILAL_ 0 0 0 REV__nc|ENSG00000146414|Q149N8-5|SHPRH REV__nc|ENSG00000146414|Q149N8-5|SHPRH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.326934 1036.63931 0.69238 0.00035957 -0.052629 -2.7332E-05 0.63975 0.00033224 519.326899478107 71.648 0.38189 71.687 71.511 71.893 0.039024 -0.02397 -4.0849E-05 NaN 85.272 58 17 4 NaN NaN NaN NaN 0 NaN NaN 0 24052000 + 55237 20834 37222 38045 0.12246014985225884 RTIAEPYEMLM 11 Unmodified _RTIAEPYEMLM_ 0 0 0 REV__ENST00000525693.5_1_11:65421851-65422496:-|nuORF REV__ENST00000525693.5_1_11:65421851-65422496:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3284301757812 2 677.330698 1352.64684 NaN NaN NaN NaN NaN NaN NaN 60.023 1 59.532 59.032 60.032 -0.49079 0 0 0 0.93669 1 32673 32673 4.897 1.6157 1 + 55238 22698 37223 38046 64093 64093 -0.015373815916973399 RTIFSYFKGQ 10 Unmodified _RTIFSYFKGQ_ 0 0 0 ENST00000507900.5_1_5:176938794-176942272:-|nuORF;ENST00000503078.5_1_5:176938794-176943460:-|nuORF;ENSG00000183258|ENST00000330503|DDX41;ENST00000512027.1_1_5:176940338-176940763:-|nuORF;ENST00000504807.5_1_5:176939673-176941736:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF ENST00000507900.5_1_5:176938794-176942272:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.8314208984375 2 623.83258 1245.65061 NaN NaN NaN NaN NaN NaN NaN 25.186 1 25.186 24.686 25.686 0 0 0 0 0.99514 1 12903 12903 1.1933 0.23107 1 55239 9129 37224 38047 64094 64094 0.03760792288699122 RTKKKKKKLI 10 Unmodified _RTKKKKKKLI_ 0 0 0 REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF REV__ENST00000427154.1_1_1:23346896-23414436:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 424.3065795898438 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 1.4133 1 -1.0687 -1.5687 -0.5687 -2.482 0 0 0 1.0061 1 731 731 0 0 1 + 55240 26917 37225 38048 64095 64095 0.2731075157826126 RTKLLFLR 8 Unmodified _RTKLLFLR_ 0 0 0 nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3602905273438 2 523.845294 1045.67603 1.6421 0.00086021 -0.90486 -0.00047401 0.73725 0.0003862 523.844894535889 106.31 0.98497 100.13 99.666 100.65 -6.1757 386 160 3 0 0 0 0.80992 1 70895 70895 0.69038 0 1 11181000 55241 5182 37226 38049 64096 64096 0.1550231160176736 RTLDFDPLL 9 Unmodified _RTLDFDPLL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2989501953125 2 545.300581 1088.58661 0.49896 0.00027209 -0.27793 -0.00015155 0.22104 0.00012053 545.3002804521648 74.247 0.2052 74.247 74.137 74.342 0 16 9 3 0 0 0 0.34134 1 41287 41287 15.248 5.1746 1 894330 55242 4691 37227 38050 64097 64097 0.0458601213174461 RTLDFDPLL 9 Unmodified _RTLDFDPLL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3010864257812 2 545.300581 1088.58661 0.52082 0.000284 1.8877 0.0010293 2.4085 0.0013134 545.3005945434622 74.598 0.30521 74.122 73.997 74.302 -0.47588 31 12 3 0 0 0 0.2324 1 40846 40846 20.415 3.4722 1 1066000 55243 4691 37227 38050 64098 64098 0.0458601213174461 RTLDFDPLL 9 Unmodified _RTLDFDPLL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3016967773438 2 545.300581 1088.58661 1.1205 0.00061098 -1.5766 -0.00085973 -0.45617 -0.00024875 545.2991905532111 94.525 0.2579 88.35 88.168 88.426 -6.1757 18 14 2 0 0 0 0.1685 1 62559 62559 26.268 2.2476 1 4171700 55244 4691 37227 38050 64099 64099 0.0458601213174461 RTLDKVLEV 9 Unmodified _RTLDKVLEV_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8212890625 2 536.821681 1071.62881 -0.34818 -0.00018691 0.50985 0.0002737 0.16167 8.6786E-05 536.8217699229617 41.196 0.23946 41.196 41.065 41.304 0 24 11 3 0 0 0 0.085319 1 22195 22195 36.506 3.7205 1 3905500 55245 1302 37228 38051 64100 64100 0.09585987540140195 RTLDKVLEV 9 Unmodified _RTLDKVLEV_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.2175903320312 3 358.21688 1071.62881 -0.53064 -0.00019009 1.8407 0.00065938 1.3101 0.0004693 358.2176865459091 41.176 0.1809 41.176 41.1 41.281 0 15 8 2 0 0 0 0.27545 1 22199 22199 17.863 5.6884 1 2555800 55246 1302 37228 38051 64101 64101 0.09585987540140195 RTLDKVLEV 9 Unmodified _RTLDKVLEV_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8202514648438 2 536.821681 1071.62881 0.39541 0.00021226 -1.5965 -0.00085702 -1.2011 -0.00064476 536.8205910288905 46.373 0.23015 41.292 41.115 41.345 -5.0805 27 15 2 0 0 0 0.069655 1 28638 28638 40.239 3.733 1 16170000 55247 1302 37228 38051 64102 64102 0.09585987540140195 RTLDKVLEV 9 Unmodified _RTLDKVLEV_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3;ENST00000469168.1_1_9:2828673-2829902:-|nuORF ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.821681 1071.62881 -0.19641 -0.00010544 -0.42749 -0.00022949 -0.6239 -0.00033492 536.8215978496181 41.42 0.2057 41.117 41.009 41.214 -0.30304 -0.084742 -0.00035864 NaN 40.239 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1996200 55248 1302 37228 38051 0.09585987540140195 RTLHPRQSV 9 Unmodified _RTLHPRQSV_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2111206054688 3 365.212351 1092.61522 NaN NaN NaN NaN NaN NaN NaN 45.022 1 45 44.5 45.5 -0.022064 0 0 0 0.82283 1 24170 24170 4.897 2.3985 1 55249 5160 37229 38052 64103 64103 0.072621745515562 RTLKLHFY 8 Unmodified _RTLKLHFY_ 0 0 0 ENST00000557380.5_1_14:50318303-50318570:-|nuORF ENST00000557380.5_1_14:50318303-50318570:-|nuORF ENST00000557380.5_1_14:50318303-50318570:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3129272460938 2 539.313826 1076.6131 NaN NaN NaN NaN NaN NaN NaN 92.208 1 91.727 91.227 92.227 -0.48092 0 0 0 0.97444 1 50401 50401 2.8892 0 1 55250 15258 37230 38053 64104 64104 0.0778574581374869 RTLLWTELF 9 Unmodified _RTLLWTELF_ 0 0 0 ENST00000532399.1_1_11:67800343-67800493:+|nuORF;ENSG00000110717|ENST00000313468|NDUFS8 ENST00000532399.1_1_11:67800343-67800493:+|nuORF ENST00000532399.1_1_11:67800343-67800493:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8330688476562 2 589.832049 1177.64954 1.8791 0.0011083 0.078768 4.646E-05 1.9579 0.0011548 589.832050324908 93.547 0.26937 93.57 93.448 93.717 0.022987 17 10 2 0 0 0 0.098164 1 52012 52012 33.445 4.3633 1 2535200 55251 2735 37231 38054 64105 64105 0.06782577919784671 RTLRPDRSL 9 Unmodified _RTLRPDRSL_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.8880615234375 3 371.887756 1112.64144 0.74814 0.00027822 1.1575 0.00043048 1.9057 0.0007087 371.8885009669636 23.613 1.0772 20.785 20.332 21.41 -2.8273 137 73 4 0 0 0 0.5029 1 12821 12821 4.5289 0 1 53970000 + 55252 19740 37232 38055 64106 64106 0.08962443723044089 RTLRRRWRRRR 11 Unmodified _RTLRRRWRRRR_ 0 0 0 REV__ENST00000375344.7_1_9:97136898-97137102:+|nuORF REV__ENST00000375344.7_1_9:97136898-97137102:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 834.520751953125 2 834.522531 1667.03051 NaN NaN NaN NaN NaN NaN NaN 99.796 1 93.62 93.12 94.12 -6.1757 0 0 0 0.9435 1 66571 66571 0 0 1 + 55253 26202 37233 38056 64107 64107 0.22367428527286393 RTLSLNLIL 9 Unmodified _RTLSLNLIL_ 0 0 0 ENST00000496733.6_1_5:87564863-87566358:+|nuORF ENST00000496733.6_1_5:87564863-87566358:+|nuORF ENST00000496733.6_1_5:87564863-87566358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8356323242188 2 521.834591 1041.65463 0.17618 9.1936E-05 0.52071 0.00027173 0.69689 0.00036366 521.8347392131122 73.551 0.30598 73.595 73.428 73.734 0.043983 21 13 2 0 0 0 0.34134 1 40526 40526 15.248 0 1 1595400 55254 14382 37234 38057 64108 64108 0.13546881782417586 RTLTPPLRRS 10 Unmodified _RTLTPPLRRS_ 0 0 0 nc|ENSG00000123200|Q5T200-2|ZC3H13;nc|ENSG00000123200|Q5T200|ZC3H13;ENSG00000123200|ENST00000679008|ZC3H13 nc|ENSG00000123200|Q5T200-2|ZC3H13 nc|ENSG00000123200|Q5T200-2|ZC3H13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5794067382812 3 399.578923 1195.71494 -0.033723 -1.3475E-05 -0.41266 -0.00016489 -0.44638 -0.00017836 399.5788728364552 21.426 0.23112 21.44 21.315 21.546 0.013796 115 37 4 0 0 0 0.68844 1 11011 11011 2.2527 1.143 1 29360000 55255 3690 37235 38058 64109 64109 0.12490992165521675 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.80224609375 2 539.803823 1077.59309 NaN NaN NaN NaN NaN NaN NaN 21 1 21 20.5 21.5 0 0 0 0 0.63508 1 10598 10598 11.495 0.67078 1 55256 1424 37236 38059 64110 64110 0.057399500831252226 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8029174804688 2 539.803823 1077.59309 -0.46453 -0.00025075 -0.045205 -2.4402E-05 -0.50973 -0.00027516 539.8037220020443 20.873 0.16013 20.901 20.82 20.98 0.028357 13 6 3 0 0 0 0.32235 1 10572 10572 16.149 3.1066 1 1295900 55257 1424 37236 38059 64111 64111 0.057399500831252226 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2042846679688 3 360.204974 1077.59309 -0.33887 -0.00012206 -0.91801 -0.00033067 -1.2569 -0.00045274 360.2044070515557 20.876 0.16013 20.904 20.82 20.98 0.028357 11 6 3 0 0 0 0.34134 1 10593 10593 10.899 5.1671 1 691290 55258 1424 37236 38059 64112 64112 0.057399500831252226 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8045043945312 2 539.803823 1077.59309 0.12789 6.9035E-05 -0.5698 -0.00030758 -0.44191 -0.00023854 539.8034532672687 20.85 0.16695 20.861 20.776 20.943 0.010553 18 8 3 0 0 0 0.017075 1 10637 10637 66.457 16.524 1 5064200 55259 1424 37236 38059 64113 64113 0.057399500831252226 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8032836914062 2 539.803823 1077.59309 0.01227 6.6234E-06 0.45985 0.00024823 0.47212 0.00025485 539.804075870999 23.326 0.35974 20.548 20.397 20.757 -2.7784 66 29 3 0 0 0 0.017075 2 12583 12583;12695 66.457 7.3033 1 18046000 55260 1424 37236 38059 64114;64115 64114 0.057399500831252226 RTNAIKQTF 9 Unmodified _RTNAIKQTF_ 0 0 0 nc|ENSG00000085978|Q676U5-4|ATG16L1;nc|ENSG00000085978|Q676U5-5|ATG16L1;nc|ENSG00000085978|Q676U5-2|ATG16L1;ENSG00000085978|ENST00000392017|ATG16L1;ENST00000479942.5_1_2:234198871-234202993:+|nuORF nc|ENSG00000085978|Q676U5-4|ATG16L1 nc|ENSG00000085978|Q676U5-4|ATG16L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.205322265625 3 360.204974 1077.59309 0.82059 0.00029558 0.30524 0.00010995 1.1258 0.00040553 360.20498786682344 23.317 0.38636 20.539 20.388 20.774 -2.7784 81 31 4 0 0 0 0.040683 1 12621 12621 53.317 24.822 1 30013000 55261 1424 37236 38059 64116 64116 0.057399500831252226 RTPPHLLYSDR 11 Unmodified _RTPPHLLYSDR_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B;nc|ENSG00000259956|Q8NDT2-2|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.9109497070312 3 452.245721 1353.71533 0.51505 0.00023293 -1.9446 -0.00087945 -1.4296 -0.00064652 452.24471834726177 28.624 0.13687 28.654 28.544 28.681 0.029564 7 4 2 0 0 0 0.3057 1 14913 14913 2.084 0.75432 1 1948100 55262 10825 37237 38060 64117 64117 0.05262367094678666 RTPPSKRLFL 10 Unmodified _RTPPSKRLFL_ 0 0 0 ENST00000360547.9_1_15:81601214-81601322:+|nuORF ENST00000360547.9_1_15:81601214-81601322:+|nuORF ENST00000360547.9_1_15:81601214-81601322:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.584716796875 3 405.583785 1213.72953 0.59302 0.00024052 0.32775 0.00013293 0.92077 0.00037345 405.5840151661978 38.481 0.2331 34.112 33.964 34.197 -4.3689 26 14 2 0 0 0 0.48629 1 22694 22694 17.049 2.8304 1 9747100 55263 12168 37238 38061 64118 64118 0.13121064313645547 RTPRLALA 8 Unmodified _RTPRLALA_ 0 0 0 ENSG00000116014|ENST00000234371|KISS1R ENSG00000116014|ENST00000234371|KISS1R ENSG00000116014|ENST00000234371|KISS1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2866516113281 2 449.285069 896.555585 2.8544 0.0012825 -0.56239 -0.00025267 2.2921 0.0010298 449.28453951110487 100.15 1.1108 100.11 99.294 100.4 -0.036301 54 40 2 0 0 0 0.81107 1 55548 55548 0 0 1 1712200 55264 3185 37239 38062 64119 64119 0.10316903608156736 RTQGEATSRS 10 Unmodified _RTQGEATSRS_ 0 0 0 ENST00000468293.5_1_7:150707648-150709543:+|nuORF ENST00000468293.5_1_7:150707648-150709543:+|nuORF ENST00000468293.5_1_7:150707648-150709543:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.775146484375 2 546.773251 1091.53195 NaN NaN NaN NaN NaN NaN NaN 44.894 1 44.894 44.394 45.394 0 0 0 0 0.42631 1 24446 24446 29.841 7.1043 1 55265 13802 37240 38063 64120 64120 -0.01015606686951287 RTQISLDTKL 10 Unmodified _RTQISLDTKL_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000174844|Q6ZR08|DNAH12 REV__nc|ENSG00000174844|Q6ZR08|DNAH12 MSMS AL20221201_MKP_PDAC_01 4 392.2304077148438 3 392.231189 1173.67174 NaN NaN NaN NaN NaN NaN NaN 14.877 1 12.35 11.85 12.85 -2.5273 0 0 0 0.95966 1 7587 7587 5.0475 0.15051 1 + 55266 22822;29793 37241 38064 64121 64121 0.09184757597563475 RTQPKQLIVD 10 Unmodified _RTQPKQLIVD_ 0 0 0 ENSG00000164056|ENST00000651917|SPRY1 ENSG00000164056|ENST00000651917|SPRY1 ENSG00000164056|ENST00000651917|SPRY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.9033508300781 3 399.903183 1196.68772 0.057788 2.311E-05 0.24314 9.7233E-05 0.30093 0.00012034 399.90323584238075 26.324 0.37006 26.351 26.219 26.589 0.026951 36 16 3 0 0 0 0.5543 2 13618 13618;13711 13.519 3.7544 1 13771000 55267 7126 37242 38065 64122;64123 64122 0.0972446383445913 RTRAALDAA 9 Unmodified _RTRAALDAA_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7676696777344 2 472.76724 943.519927 0.29413 0.00013906 -0.16641 -7.8672E-05 0.12772 6.0383E-05 472.7670453011675 84.128 0.29839 84.128 84.021 84.319 0 21 14 2 0 0 0 0.2191 1 46590 46590 0 0 1 754020 55268 5044 37243 38066 64124 64124 0.04590821360488917 RTRAWLPA 8 Unmodified _RTRAWLPA_ 0 0 0 REV__ENST00000170168.8_1_19:1828312-1828606:-|nuORF REV__ENST00000170168.8_1_19:1828312-1828606:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7823791503906 2 485.782693 969.550834 NaN NaN NaN NaN NaN NaN NaN 76.06 1 75.581 75.081 76.081 -0.47945 0 0 0 0.97444 1 41639 41639 0.79363 0 1 + 55269 24716 37244 38067 64125 64125 0.0648401946540389 RTRFRLFV 8 Unmodified _RTRFRLFV_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5573120117188 3 365.55757 1093.65088 -0.14631 -5.3483E-05 -0.12655 -4.6263E-05 -0.27286 -9.9746E-05 365.55736310758743 32.716 0.32552 32.746 32.539 32.864 0.029743 31 13 3 0 0 0 0.78809 1 17202 17202 9.3831 1.2276 1 13725000 + 55270 21275 37245 38068 64126 64126 0.10780256799216659 RTRFRLFV 8 Unmodified _RTRFRLFV_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5582580566406 3 365.55757 1093.65088 1.5201 0.00055567 -0.43533 -0.00015914 1.0847 0.00039653 365.55741651096434 85.83 0.49924 79.654 79.424 79.924 -6.1757 59 27 3 0 0 0 0.79742 1 56610 56610 8.1555 0.54658 1 19139000 + 55271 21275 37245 38068 64127 64127 0.10780256799216659 RTRKIKLLF 9 Unmodified _RTRKIKLLF_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2641906738281 3 392.264276 1173.771 NaN NaN NaN NaN NaN NaN NaN 94.116 1 93.696 93.196 94.196 -0.42044 0 0 0 0.86004 1 51421 51421 0.26902 0.1097 1 + 55272 23110 37246 38069 64128 64128 0.1910624507297598 RTRKIKLLF 9 Unmodified _RTRKIKLLF_ 0 0 0 REV__ENSG00000179639|ENST00000693622|FCER1A REV__ENSG00000179639|ENST00000693622|FCER1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.26416015625 3 392.264276 1173.771 NaN NaN NaN NaN NaN NaN NaN 94.3 1 93.88 93.38 94.38 -0.42044 0 0 0 0.86004 1 51523 51523 0.26902 0.1097 1 + 55273 23110 37246 38069 64129 64129 0.1910624507297598 RTRKKKKKKWY 11 Unmodified _RTRKKKKKKWY_ 0 0 0 REV__ENST00000406316.6_3_2:51255552-51255684:-|nuORF REV__ENST00000406316.6_3_2:51255552-51255684:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 775.4959716796875 2 775.493719 1548.97288 NaN NaN NaN NaN NaN NaN NaN 104.01 1 103.97 103.47 104.47 -0.048737 0 0 0 0.9435 1 57756 57756 0 0 1 + 55274 26656 37247 38070 64130 64130 0.2203572875853297 RTRKYLELY 9 Unmodified _RTRKYLELY_ 0 0 0 nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 nc|ENSG00000149451|Q9BZ11-2|ADAM33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5707092285156 3 414.571545 1240.69281 NaN NaN NaN NaN NaN NaN NaN 23.577 1 23.599 23.099 24.099 0.021185 0 0 0 0.85447 1 12147 12147 0.96228 0.33545 1 55275 6007 37248 38071 64131 64131 0.08208767697078656 RTRLAAAP 8 Unmodified _RTRLAAAP_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2610473632812 2 428.261594 854.508634 0.98214 0.00042061 -0.67601 -0.00028951 0.30613 0.0001311 428.26117725888196 79.676 0.48657 79.186 78.916 79.403 -0.48932 56 21 4 0 0 0 0.81107 2 43556 43556;43665 0 0 1 8582900 + 55276 28837 37249 38072 64132;64133 64132 0.07556044057014333 RTRLAAAP 8 Unmodified _RTRLAAAP_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2618408203125 2 428.261594 854.508634 0.5559 0.00023807 -0.057739 -2.4728E-05 0.49816 0.00021334 428.261624622762 82.778 0.50363 82.281 81.964 82.467 -0.49751 38 21 2 0 0 0 0.81107 1 45210 45210 0 0 1 1237700 + 55277 28837 37249 38072 64134 64134 0.07556044057014333 RTRLAAAP 8 Unmodified _RTRLAAAP_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2623901367188 2 428.261594 854.508634 0.39459 0.00016899 -0.43708 -0.00018718 -0.042484 -1.8194E-05 428.2612594992253 79.165 1.1553 79.22 78.936 80.092 0.054977 149 45 5 0 0 0 0.81107 3 43625 43625;43736;43845 0 0 1 658880000 + 55278 28837 37249 38072 64135;64136;64137 64135 0.07556044057014333 RTRLAAAP 8 Unmodified _RTRLAAAP_ 0 0 0 REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 855.516357421875 1 855.515911 854.508634 1.4213 0.0012159 -1.1357 -0.00097158 0.28561 0.00024434 855.5149748451599 104.95 0.24657 98.776 98.609 98.856 -6.1757 30 19 2 0 0 0 0.81107 1 70187 70187 0 0 1 16379000 + 55279 28837 37249 38072 64138 64138 0.07556044057014333 RTRRRPRA 8 Unmodified _RTRRRPRA_ 0 0 0 REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.3699340820312 2 534.834114 1067.65368 NaN NaN NaN NaN NaN NaN NaN 105.98 1 99.8 99.3 100.3 -6.1757 0 0 0 0.97444 1 70966 70966 0.69038 0 1 + 55280 26393 37250 38073 64139 64139 0.12255524976740162 RTRRRPRA 8 Unmodified _RTRRRPRA_ 0 0 0 REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.8370971679688 2 534.834114 1067.65368 NaN NaN NaN NaN NaN NaN NaN 106.08 1 99.906 99.406 100.41 -6.1757 0 0 0 0.97444 1 71030 71030 0.69038 0 1 + 55281 26393 37250 38073 64140 64140 0.12255524976740162 RTRSWLYAA 9 Unmodified _RTRSWLYAA_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENST00000504260.5_1_17:47783523-47784713:-|nuORF;ENST00000508607.1_1_17:47783523-47785148:-|nuORF;ENST00000508926.1_1_17:47782482-47783697:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.3043212890625 2 562.30399 1122.59343 NaN NaN NaN NaN NaN NaN NaN 20.962 1 20.99 20.49 21.49 0.028357 0 0 0 0.83812 1 10623 10623 2.9952 0.69251 1 55282 3566 37251 38074 64141 64141 0.03703369802974521 RTSSKYFNF 9 Unmodified _RTSSKYFNF_ 0 0 0 nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2877807617188 2 575.288005 1148.56146 0.54141 0.00031147 1.6455 0.00094666 2.187 0.0012581 575.2879761947246 40.311 0.212 40.316 40.19 40.402 0.0050545 24 9 3 0 0 0 0.060956 1 21505 21505 31.268 1.0435 1 2267200 55283 4067 37252 38075 64142 64142 -0.006880426708221421 RTSSKYFNF 9 Unmodified _RTSSKYFNF_ 0 0 0 nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.2882080078125 2 575.288005 1148.56146 0.61307 0.00035269 3.2874 0.0018912 3.9005 0.0022439 575.2899734112927 43.973 0.21013 39.208 39.092 39.302 -4.7648 20 13 2 0 0 0 0.058763 1 26835 26835 32.037 10.291 1 10836000 55284 4067 37252 38075 64143 64143 -0.006880426708221421 RTSYFSQGHF 10 Unmodified _RTSYFSQGHF_ 0 0 0 REV__ENSG00000121716|ENST00000609309|PILRB REV__ENSG00000121716|ENST00000609309|PILRB MSMS AL20221201_MKP_PDAC_01 4 410.5264587402344 3 410.528117 1228.56252 NaN NaN NaN NaN NaN NaN NaN 17.069 1 14.482 13.982 14.982 -2.5866 0 0 0 0.96981 1 8894 8894 1.9064 0.1641 1 + 55285 19304 37253 38076 64144 64144 -0.04261828301901005 RTVMEPPLAEG 11 Unmodified _RTVMEPPLAEG_ 0 0 0 REV__ENST00000570036.5_1_16:84513521-84531159:-|nuORF REV__ENST00000570036.5_1_16:84513521-84531159:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.541259765625 3 400.541146 1198.60161 NaN NaN NaN NaN NaN NaN NaN 21.039 1 18.346 17.846 18.846 -2.693 0 0 0 0.80907 1 11236 11236 11.631 0.11349 1 + 55286 20503 37254 38077 64145 64145 0.010251359374251479 RTVRGDSDPAP 11 Unmodified _RTVRGDSDPAP_ 0 0 0 REV__ENST00000461200.5_1_11:2337241-2339151:+|nuORF REV__ENST00000461200.5_1_11:2337241-2339151:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3610229492188 2 585.796726 1169.5789 0.41313 0.00024201 -0.19027 -0.00011146 0.22285 0.00013055 585.7968437954751 77.439 0.068878 77.489 77.441 77.51 0.050102 4 2 2 0 0 0 0.28752 1 42744 42744 13.906 3.0821 1 569170 + 55287 27312 37255 38078 64146 64146 0.0008925286417706957 RTWRMEEFLEW 11 Unmodified _RTWRMEEFLEW_ 0 0 0 REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF REV__ENST00000471720.1_1_3:160170509-160171103:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 791.8753662109375 2 791.877193 1581.73983 NaN NaN NaN NaN NaN NaN NaN 18.328 1 18.328 17.828 18.828 0 0 0 0 0.9435 1 9103 9103 0 0 1 + 55288 27500 37256 38079 64147 64147 -0.027767408140789485 RTYAVRVLF 9 Unmodified _RTYAVRVLF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8331298828125 2 562.832383 1123.65021 0.85979 0.00048392 0.026176 1.4733E-05 0.88597 0.00049865 562.8322532076395 52.088 0.27215 52.029 51.896 52.168 -0.058918 29 12 3 0 0 0 0.067618 1 28195 28195 43.772 7.6454 1 7045900 55289 4271 37257 38080 64148 64148 0.09333417359516716 RTYAVRVLF 9 Unmodified _RTYAVRVLF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5582580566406 3 375.557348 1123.65021 0.4017 0.00015086 0.10054 3.7758E-05 0.50224 0.00018862 375.55759962760357 52.085 0.29324 52.026 51.896 52.189 -0.058918 31 13 3 0 0 0 0.046359 1 28201 28201 46.475 17.038 1 3306100 55290 4271 37257 38080 64149 64149 0.09333417359516716 RTYDKMVWYAL 11 Unmodified _RTYDKMVWYAL_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 723.3663330078125 2 723.36593 1444.71731 -0.13414 -9.7033E-05 0.11887 8.5987E-05 -0.015271 -1.1046E-05 723.3661000617701 69.363 0.34369 68.884 68.676 69.02 -0.47903 31 14 3 0 0 0 0.7326 1 37980 37980 1.1933 0 1 4180400 + 55291 18337 37258 38081 64150 64150 0.012736597883304057 RTYITFQTWK 10 Unmodified _RTYITFQTWK_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MSMS AL20221201_MKP_PDAC_01 4 448.2421875 3 448.575067 1342.70337 NaN NaN NaN NaN NaN NaN NaN 28.997 1 25.695 25.195 26.195 -3.3016 0 0 0 0.93054 1 16225 16225 6.6235 0.3891 1 55292 932 37259 38082 64151 64151 0.04572750351508148 RTYKIAPKL 9 Unmodified _RTYKIAPKL_ 0 0 0 REV__nc|ENSG00000078018|P11137-3|MAP2 REV__nc|ENSG00000078018|P11137-3|MAP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.2141723632812 3 363.897481 1088.67061 2.0673 0.00075227 0.87805 0.00031952 2.9453 0.0010718 363.89769292103824 35.888 0.22287 31.695 31.63 31.853 -4.1928 17 13 2 0 0 0 0.21021 1 20868 20868 4.5289 3.8312 1 2935600 + 55293 17620 37260 38083 64152 64152 0.12982588019326613 RTYNIFAITF 10 Unmodified _RTYNIFAITF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 415.8434143066406 3 415.892396 1244.65536 0.83037 0.00034534 -4.0696 -0.0016925 -3.2392 -0.0013472 415.88994932328654 18 0.21473 15.41 15.275 15.489 -2.5893 17 13 2 0 0 0 0.23922 1 9493 9493 3.8763 3.793 1 1980600 55294 550 37261 38084 64153 64153 0.04281676431446613 RTYTTTLK 8 Unmodified _RTYTTTLK_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.279541015625 2 492.279649 982.544745 NaN NaN NaN NaN NaN NaN NaN 72.178 1 72.217 71.717 72.717 0.039024 0 0 0 0.97444 1 39743 39743 2.3027 0 1 + 55295 18886 37262 38085 64154 64154 0.052774564432297666 RTYWMKTF 8 Unmodified _RTYWMKTF_ 0 0 0 ENST00000469416.1_1_1:40916633-40922838:+|nuORF ENST00000469416.1_1_1:40916633-40922838:+|nuORF ENST00000469416.1_1_1:40916633-40922838:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7811889648438 2 566.784044 1131.55354 0.67943 0.00038509 -2.9222 -0.0016563 -2.2428 -0.0012712 566.7819157035865 83.96 0.26562 83.46 83.241 83.507 -0.49961 13 10 2 0 0 0 0.80676 1 45946 45946 2.5775 0 1 366410 55296 13834 37263 38086 64155 64155 -0.006978931919547904 RVADLTEQY 9 Unmodified _RVADLTEQY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7771606445312 2 547.77747 1093.54039 -0.25087 -0.00013742 0.025947 1.4213E-05 -0.22492 -0.00012321 547.7775388241872 33.275 0.21976 33.275 33.166 33.386 0 19 10 2 0 0 0 0.05483 1 17430 17430 43.772 24.515 1 8080300 55297 8379;16567 37264 38087 64156 64156 -0.0026405277033063612 RVAEHHVATL 10 Unmodified _RVAEHHVATL_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2123413085938 3 378.21224 1131.61489 -0.60518 -0.00022889 -0.25983 -9.8269E-05 -0.865 -0.00032716 378.21218999088813 16.922 0.12202 16.922 16.838 16.96 0 59 30 3 0 0 0 0.65164 1 8267 8267 8.2864 8.2864 1 2147700 55298 3299 37265 38088 64157 64157 0.05434754831708233 RVAEHHVATL 10 Unmodified _RVAEHHVATL_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.213623046875 3 378.21224 1131.61489 1.1242 0.0004252 0.7535 0.00028498 1.8777 0.00071018 378.2125151221796 18.174 0.38181 15.552 15.386 15.768 -2.6215 72 28 4 0 0 0 0.44591 2 9509 9509;9616 19.144 9.9002 1 24084000 55299 3299 37265 38088 64158;64159 64158 0.05434754831708233 RVAEVQQVL 9 Unmodified _RVAEVQQVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.3063354492188 2 521.306198 1040.59784 0.3797 0.00019794 0.028247 1.4725E-05 0.40795 0.00021266 521.3063019324973 39.841 0.31184 39.841 39.681 39.993 0 45 15 4 0 0 0 0.10247 1 21349 21349 32.786 2.1491 1 16180000 55300 9879 37266 38089 64160 64160 0.07916834225898128 RVAEVQQVL 9 Unmodified _RVAEVQQVL_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.3065795898438 2 521.306198 1040.59784 0.55541 0.00028954 0.58759 0.00030631 1.143 0.00059585 521.3064314750732 45.13 0.36131 40.278 40.053 40.414 -4.852 55 23 3 0 0 0 0.15471 1 27652 27652 27.629 5.8822 1 31087000 55301 9879 37266 38089 64161 64161 0.07916834225898128 RVAFKINSV 9 Unmodified _RVAFKINSV_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3118896484375 2 517.311284 1032.60801 -0.0014436 -7.4678E-07 -0.10189 -5.271E-05 -0.10334 -5.3457E-05 517.3114091424127 37.557 0.21113 37.574 37.479 37.691 0.01704 16 10 2 0 0 0 0.013323 1 19931 19931 71.134 22.788 1 3297900 55302 4592 37267 38090 64162 64162 0.09301441951151901 RVAFKINSV 9 Unmodified _RVAFKINSV_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3126831054688 2 517.311284 1032.60801 1.3335 0.00068982 -0.24298 -0.0001257 1.0905 0.00056412 517.3114834409556 41.953 0.28411 37.269 37.067 37.351 -4.6846 28 17 2 0 0 0 0.14 1 25278 25278 29.082 3.6823 1 9302600 55303 4592 37267 38090 64163 64163 0.09301441951151901 RVANLHFPSV 10 Unmodified _RVANLHFPSV_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3199462890625 2 570.31964 1138.62473 0.45073 0.00025706 0.47788 0.00027254 0.9286 0.0005296 570.3197828434788 48.199 0.37946 48.161 47.907 48.286 -0.038647 31 18 2 0 0 0 0.40136 2 25929 25929;26040 21.537 11.463 1 1936400 55304 10367 37268 38091 64164;64165 64164 0.060959428370551905 RVANLHFPSV 10 Unmodified _RVANLHFPSV_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8841552734375 3 380.548852 1138.62473 0.39196 0.00014916 0.13288 5.0566E-05 0.52483 0.00019972 380.54880031724974 48.157 0.43992 48.118 47.924 48.364 -0.038643 42 21 3 0 0 0 0.50362 1 25942 25942 10.315 8.4089 1 3117900 55305 10367 37268 38091 64166 64166 0.060959428370551905 RVAPEEHPV 9 Unmodified _RVAPEEHPV_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2747192382812 2 517.274898 1032.53524 0.70937 0.00036694 0.17665 9.1375E-05 0.88602 0.00045832 517.2750508072372 18.412 0.21562 15.791 15.655 15.871 -2.6215 29 17 2 0 0 0 0.06294 1 9675 9675 41.84 9.0539 1 2252700 55306 1163;13679;9849 37269 38092 64167 64167 0.02027688157704688 RVAPPRALL 9 Unmodified _RVAPPRALL_ 0 0 0 ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5 ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8225708007812 2 496.821818 991.629084 -0.012478 -6.1992E-06 1.1531 0.00057288 1.1406 0.00056668 496.8223617192537 37.334 0.28996 37.356 37.174 37.464 0.021545 37 12 4 0 0 0 0.16226 1 19768 19768 26.884 5.137 1 13596000 55307 14315 37270 38093 64168 64168 0.13293452050652377 RVAPPRALL 9 Unmodified _RVAPPRALL_ 0 0 0 ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;ENSG00000135631|ENST00000486777|RAB11FIP5 ENST00000493523.2_1_2:73302651-73316730:-|nuORF ENST00000493523.2_1_2:73302651-73316730:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.8225708007812 2 496.821818 991.629084 1.2643 0.00062815 -0.030614 -1.521E-05 1.2337 0.00061294 496.8218621223781 41.599 0.41743 36.991 36.833 37.25 -4.6079 63 27 3 0 0 0 0.0082485 2 25078 24944;25078 96.285 38.813 1 24843000 55308 14315 37270 38093 64169;64170 64170 0.13293452050652377 RVAVILNEF 9 Unmodified _RVAVILNEF_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000463627.1_1_2:114195445-114199019:+|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8118896484375 2 530.811116 1059.60768 0.61949 0.00032883 -0.65024 -0.00034516 -0.030752 -1.6324E-05 530.8116506182217 64.296 0.19172 63.811 63.675 63.867 -0.48512 12 8 2 0 0 0 0.36964 1 35072 35072 13.906 0.86358 1 934500 55309 4842 37271 38094 64171 64171 0.0802602223127451 RVCDGSPSHRL 11 Unmodified _RVCDGSPSHRL_ 0 0 0 ENST00000394464.6_1_5:142782948-142783149:-|nuORF ENST00000394464.6_1_5:142782948-142783149:-|nuORF ENST00000394464.6_1_5:142782948-142783149:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.806396484375 2 613.806571 1225.59859 -0.17558 -0.00010777 -1.0413 -0.00063916 -1.2169 -0.00074694 613.8051938970589 24.998 0.36081 24.998 24.823 25.184 0 98 34 4 0 0 0 0.69316 1 12817 12817 4.897 0.56777 1 7329300 55310 12741 37272 38095 64172 64172 -0.005186943966918989 RVCHFQRFTM 10 Unmodified _RVCHFQRFTM_ 0 0 0 nc|ENSG00000178222|Q495C1-5|RNF212 nc|ENSG00000178222|Q495C1-5|RNF212 nc|ENSG00000178222|Q495C1-5|RNF212 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2186584472656 3 442.218232 1323.63287 0.66168 0.00029261 0.5155 0.00022796 1.1772 0.00052057 442.2187695868398 81.814 0.33189 81.319 81.139 81.471 -0.4952 32 12 3 0 0 0 0.69626 1 44758 44758 3.3196 1.7274 1 978560 55311 16413 37273 38096 64173 64173 -0.016005695094690964 RVCKKLCLL 9 Unmodified _RVCKKLCLL_ 0 0 0 REV__ENST00000420115.6_2_3:133306228-133306333:+|nuORF REV__ENST00000420115.6_2_3:133306228-133306333:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2210083007812 3 359.220802 1074.64058 1.4571 0.00052341 -1.5393 -0.00055294 -0.082194 -2.9526E-05 359.22011014210415 92.537 0.49698 92.567 92.308 92.805 0.030197 45 18 3 0 0 0 0.60485 2 51402 51402;51513 1.0715 0 1 15916000 + 55312 26829 37274 38097 64174;64175 64174 0.10624189758118519 RVCPECRRF 9 Unmodified _RVCPECRRF_ 0 0 0 ENSG00000149403|ENST00000527524|GRIK4 ENSG00000149403|ENST00000527524|GRIK4 ENSG00000149403|ENST00000527524|GRIK4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.8777465820312 3 389.195427 1164.56445 1.4972 0.00058269 1.9746 0.00076851 3.4718 0.0013512 389.5305286578762 20.704 0.20878 18.011 17.901 18.11 -2.693 19 14 2 0 0 0 0.209 1 11037 11037 4.5289 0.94181 1 2179100 55313 6005 37275 38098 64176 64176 -0.011248140893030723 RVCQTLGAPAF 11 Unmodified _RVCQTLGAPAF_ 0 0 0 ENST00000475941.1_1_22:20096259-20097628:+|nuORF ENST00000475941.1_1_22:20096259-20097628:+|nuORF ENST00000475941.1_1_22:20096259-20097628:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2059631347656 3 388.206098 1161.59646 0.0069223 2.6873E-06 1.6375 0.00063567 1.6444 0.00063836 388.2065039269143 18.597 0.18216 18.603 18.545 18.728 0.0060482 14 9 2 0 0 0 0.71618 1 9448 9448 1.1098 0 1 849230 55314 13971 37276 38099 64177 64177 0.022128768654965825 RVCSWRCCHL 10 Unmodified _RVCSWRCCHL_ 0 0 0 ENST00000483107.5_1_22:21329983-21333988:+|nuORF ENST00000483107.5_1_22:21329983-21333988:+|nuORF ENST00000483107.5_1_22:21329983-21333988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.5274963378906 3 421.5283 1261.56307 NaN NaN NaN NaN NaN NaN NaN 20.014 1 20.014 19.514 20.514 0 0 0 0 0.99146 1 10049 10049 1.5923 0.48253 1 55315 14122 37277 38100 64178 64178 -0.05724771449695254 RVDHHHIH 8 Unmodified _RVDHHHIH_ 0 0 0 REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF REV__ENST00000488829.1_1_9:89626569-89628063:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 525.7725219726562 2 525.770649 1049.52674 NaN NaN NaN NaN NaN NaN NaN 19.938 1 17.282 16.782 17.782 -2.6564 0 0 0 0.94061 1 10594 10594 12.532 7.7755 1 + 55316 19100 37278 38101 64179 64179 0.003961790317362102 RVDHKLQAL 9 Unmodified _RVDHKLQAL_ 0 0 0 ENSG00000214097|ENST00000397537|SMCO1 ENSG00000214097|ENST00000397537|SMCO1 ENSG00000214097|ENST00000397537|SMCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5489196777344 3 360.548852 1078.62473 -0.036764 -1.3255E-05 0.49608 0.00017886 0.45932 0.00016561 360.54895997392697 15.956 0.19079 15.961 15.887 16.078 0.0050564 29 17 2 0 0 0 0.32235 1 7985 7985 16.149 1.7437 1 875570 55317 10481 37279 38102 64180 64180 0.0885594283708997 RVDPNGSRYLL 11 Unmodified _RVDPNGSRYLL_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5711059570312 3 430.570204 1288.68878 0.81403 0.0003505 -0.24799 -0.00010678 0.56603 0.00024372 430.57008554314524 43.108 0.3367 38.343 38.111 38.448 -4.7648 35 21 2 0 0 0 0.038604 1 26086 26086 53.367 53.367 1 21018000 55318 7694;14986 37280 38103 64181 64181 0.05598678203386953 RVDPNGSRYLL 11 Unmodified _RVDPNGSRYLL_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3511962890625 2 645.351668 1288.68878 0.57693 0.00037232 -0.21739 -0.0001403 0.35953 0.00023202 645.3516473071021 43.052 0.21541 38.288 38.161 38.377 -4.7648 21 13 2 0 0 0 0.0128 1 26099 26099 60.899 18.587 1 11120000 55319 7694;14986 37280 38103 64182 64182 0.05598678203386953 RVDPNGSRYLL 11 Unmodified _RVDPNGSRYLL_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1;ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENSG00000167986|ENST00000301764|DDB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 430.570204 1288.68878 -0.032415 -1.3957E-05 -0.39803 -0.00017138 -0.43044 -0.00018534 430.5698973348913 39.029 0.20937 38.742 38.651 38.861 -0.28687 0.19951 -0.00010274 NaN 53.367 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3457300 55320 7694;14986 37280 38103 0.05598678203386953 RVDRRLVY 8 Unmodified _RVDRRLVY_ 0 0 0 nc|ENSG00000135374|Q9UKW6-4|ELF5;ENSG00000135374|ENST00000257832|ELF5;nc|ENSG00000135374|Q9UKW6|ELF5 nc|ENSG00000135374|Q9UKW6-4|ELF5 nc|ENSG00000135374|Q9UKW6-4|ELF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.2130126953125 3 359.548964 1075.62506 NaN NaN NaN NaN NaN NaN NaN 28.317 1 28.255 27.755 28.755 -0.062159 0 0 0 0.97444 1 14615 14615 3.9444 0 1 55321 4698 37281 38104 64183 64183 0.09027362556935259 RVECPLEASKR 11 Unmodified _RVECPLEASKR_ 0 0 0 ENST00000554577.5_1_14:24791640-24799178:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF ENST00000554577.5_1_14:24791640-24799178:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7616882324219 3 429.899445 1286.6765 -0.027377 -1.1769E-05 -1.007 -0.00043293 -1.0344 -0.00044469 429.8985901586002 37.395 0.27351 37.417 37.263 37.537 0.021545 16 12 2 0 0 0 0.29793 1 19882 19882 10.527 4.2931 1 1596900 55322 15213 37282 38105 64184 64184 0.04463318468651778 RVELEQVIF 9 Unmodified _RVELEQVIF_ 0 0 0 REV__ENSG00000110046|ENST00000377264|ATG2A REV__ENSG00000110046|ENST00000377264|ATG2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.899658203125 3 378.21688 1131.62881 0.0018672 7.0619E-07 2.968 0.0011226 2.9699 0.0011233 378.21802730744173 33.293 0.10709 33.322 33.231 33.338 0.028934 6 4 2 0 0 0 0.21822 1 17492 17492 0.96228 0.50394 1 510020 + 55323 18686 37283 38106 64185 64185 0.06825987540150891 RVEPLRNEL 9 Unmodified _RVEPLRNEL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000556791.1_1_14:102499420-102503925:+|nuORF ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8839416503906 3 375.884012 1124.63021 -0.78816 -0.00029626 0.53432 0.00020084 -0.25384 -9.5413E-05 375.8842954784098 30.245 0.14442 30.245 30.16 30.305 0 12 6 3 0 0 0 0.21643 1 15726 15726 26.021 18.075 1 962300 55324 9907 37284 38107 64186 64186 0.07287621628893248 RVEWVLASL 9 Unmodified _RVEWVLASL_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.810791015625 2 536.811116 1071.60768 0.24812 0.00013319 -2.7103 -0.0014549 -2.4622 -0.0013217 536.809521214208 31.266 0.16536 31.266 31.152 31.318 0 12 7 2 0 0 0 0.55775 1 16297 16297 3.9444 0.66309 1 994480 + 55325 23516 37285 38108 64187 64187 0.07474022231258459 RVFFDSCDGF 10 Unmodified _RVFFDSCDGF_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7589111328125 2 596.758223 1191.50189 -0.023143 -1.3811E-05 1.0795 0.00064422 1.0564 0.00063041 597.2599119740877 72.135 0.22608 72.135 72.032 72.258 0 18 10 2 0 0 0 0.69064 1 40159 40159 3.9444 0.66309 1 845160 55326 7596 37286 38109 64188 64188 -0.08619681676509572 RVFLFVCFL 9 Unmodified _RVFLFVCFL_ 0 0 0 ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF ENST00000561903.6_1_16:1830271-1830817:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5373229980469 3 381.884296 1142.63106 0.27545 0.00010519 2.5933 0.00099035 2.8688 0.0010955 381.88529306864274 48.523 0.35704 48.479 48.415 48.772 -0.04369 27 17 2 0 0 0 0.21302 1 26189 26189 2.9952 0 1 2391600 55327 15334 37287 38110 64189 64189 0.06544744744269337 RVFVRNREKRR 11 Unmodified _RVFVRNREKRR_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.9754028320312 3 505.974558 1514.90185 -0.47415 -0.00023991 -0.12941 -6.5479E-05 -0.60356 -0.00030538 505.9744180349647 101.55 0.17451 101.51 101.44 101.61 -0.04216 23 5 6 0 0 0 0.7453 1 56426 56426 0 0 1 171270000 55328 6322 37288 38111 64190 64190 0.16499028773705504 RVGGSDIF 8 Unmodified _RVGGSDIF_ 0 0 0 REV__ENSG00000165118|ENST00000376344|C9orf64 REV__ENSG00000165118|ENST00000376344|C9orf64 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.7257995605469 2 425.72451 849.434466 NaN NaN NaN NaN NaN NaN NaN 75.941 1 75.464 74.964 75.964 -0.47714 0 0 0 0.97444 1 41573 41573 2.5775 0 1 + 55329 21982 37289 38112 64191 64191 0.003726561748635504 RVGMLMIHCF 10 Unmodified _RVGMLMIHCF_ 0 0 0 REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.8698425292969 3 402.869663 1205.58716 0.54705 0.00022039 -0.51802 -0.0002087 0.029028 1.1695E-05 402.8696103375298 38.788 0.30803 34.337 34.164 34.472 -4.4509 44 19 3 0 0 0 0.66569 1 22898 22898 3.5871 0 1 24716000 + 55330 17315 37290 38113 64192 64192 -0.0074093101604830736 RVGPVRSAM 9 Unmodified _RVGPVRSAM_ 0 0 0 ENSG00000173334|ENST00000311922|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.774658203125 2 486.774011 971.533469 1.21 0.00058898 -0.90655 -0.00044129 0.30341 0.00014769 486.7735917248647 21.32 0.29532 18.585 18.43 18.725 -2.7348 45 25 2 0 0 0 0.014417 1 11348 11348 69.105 38.468 1 13796000 55331 8317 37291 38114 64193 64193 0.0465635586811004 RVGRCLCK 8 Unmodified _RVGRCLCK_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7572326660156 2 467.757307 933.50006 NaN NaN NaN NaN NaN NaN NaN 94.334 1 94.334 93.834 94.834 0 0 0 0 0.97444 1 52145 52145 0 0 1 55332 4239 37292 38115 64194 64194 0.030650308245412816 RVHCTFVL 8 Unmodified _RVHCTFVL_ 0 0 0 ENST00000556508.5_1_14:105362884-105363034:+|nuORF ENST00000556508.5_1_14:105362884-105363034:+|nuORF ENST00000556508.5_1_14:105362884-105363034:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.769287109375 2 487.765655 973.516756 0.84979 0.0004145 -2.7508 -0.0013418 -1.901 -0.00092726 487.7647257492023 73.668 0.83747 67.493 67.226 68.064 -6.1757 78 41 3 0 0 0 0.55032 1 48425 48425 30.225 0 1 53455000 55333 15240 37293 38116 64195 64195 0.028938549821532433 RVHLRSATL 9 Unmodified _RVHLRSATL_ 0 0 0 ENSG00000172922|ENST00000308418|RNASEH2C;ENST00000528220.1_1_11:65487749-65488268:-|nuORF ENSG00000172922|ENST00000308418|RNASEH2C ENSG00000172922|ENST00000308418|RNASEH2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5485534667969 3 351.548964 1051.62506 0.9055 0.00031833 -0.9179 -0.00032269 -0.012401 -4.3597E-06 351.5486843911492 23.792 0.31473 20.965 20.809 21.124 -2.8273 35 19 3 0 0 0 0.12357 1 12878 12878 30.703 21.32 1 7745500 55334 8269 37294 38117 64196 64196 0.10131362556944623 RVHLVSGAGNL 11 Unmodified _RVHLVSGAGNL_ 0 0 0 REV__ENST00000437099.6_1_17:9819253-9819832:-|nuORF REV__ENST00000437099.6_1_17:9819253-9819832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.82421875 2 561.822547 1121.63054 1.0571 0.00059391 1.8281 0.001027 2.8852 0.001621 561.8236337517559 42.983 0.34451 42.967 42.738 43.083 -0.015667 26 15 2 0 0 0 0.46131 1 22989 22989 18.373 3.5348 1 4714000 + 55335 27037 37295 38118 64197 64197 0.07459041348738538 RVHNVQLL 8 Unmodified _RVHNVQLL_ 0 0 0 REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1 REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.795654296875 2 489.795801 977.577048 0.26897 0.00013174 -0.271 -0.00013273 -0.0020257 -9.9217E-07 489.79581859009573 16.996 0.19276 14.409 14.304 14.496 -2.5866 43 34 2 0 0 0 0.79669 1 8891 8891 8.5933 0 1 2831400 + 55336 21302 37296 38119 64198 64198 0.08736288636896461 RVIAIIIIG 9 Unmodified _RVIAIIIIG_ 0 0 0 nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3 nc|ENSG00000183780|Q8IY50|SLC35F3 nc|ENSG00000183780|Q8IY50|SLC35F3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.4215698242188 2 484.33677 966.658987 NaN NaN NaN NaN NaN NaN NaN 73.141 1 73.141 72.641 73.641 0 0 0 0 0.8622 1 40717 40717 0 0 1 55337 9196 37297 38120 64199 64199 0.17432390996009417 RVIGTLEEV 9 Unmodified _RVIGTLEEV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2925415039062 2 508.292756 1014.57096 0.74269 0.0003775 -0.98342 -0.00049987 -0.24073 -0.00012236 508.2922388902759 43.044 0.33286 43.044 42.889 43.222 0 49 16 4 0 0 0 0.047788 1 23422 23422 45.7 1.2926 1 64794000 55338 1816 37298 38121 64200 64200 0.06425725614724342 RVIGTLEEV 9 Unmodified _RVIGTLEEV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2921447753906 2 508.292756 1014.57096 0.5244 0.00026655 0.1006 5.1133E-05 0.62499 0.00031768 508.2927222070533 49.112 0.42819 43.716 43.424 43.853 -5.3961 52 28 2 0 0 0 0.047788 1 30506 30506 45.7 1.8413 1 70099000 55339 1816 37298 38121 64201 64201 0.06425725614724342 RVINLHEVY 9 Unmodified _RVINLHEVY_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8179321289062 2 571.819473 1141.62439 0.18924 0.00010821 0.58912 0.00033687 0.77836 0.00044508 571.8195092729296 38.056 0.20121 37.785 37.681 37.882 -0.27133 16 9 2 0 0 0 0.15471 1 20020 20020 27.629 13.723 1 2064300 55340 1323 37299 38122 64202 64202 0.059245231172326385 RVINLHEVY 9 Unmodified _RVINLHEVY_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5487365722656 3 381.548741 1141.62439 0.033871 1.2923E-05 0.25273 9.6428E-05 0.2866 0.00010935 381.54885230914925 38.071 0.24203 37.799 37.66 37.902 -0.27133 15 11 2 0 0 0 0.36964 1 20056 20056 9.544 5.9569 1 1773800 55341 1323 37299 38122 64203 64203 0.059245231172326385 RVINLHEVY 9 Unmodified _RVINLHEVY_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.819473 1141.62439 0.31527 0.00018028 -0.5127 -0.00029317 -0.19743 -0.0001129 572.3202081598481 37.713 0.11808 37.713 37.625 37.743 0 -0.035554 -0.0007129 NaN 27.629 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 910040 55342 1323 37299 38122 0.059245231172326385 RVIQPEEIW 9 Unmodified _RVIQPEEIW_ 0 0 0 ENSG00000203805|ENST00000398250|PLPP4;nc|ENSG00000203805|Q5VZY2-2|PLPP4;nc|ENSG00000203805|Q5VZY2-4|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5486450195312 3 390.548629 1168.62406 -0.21739 -8.4902E-05 0.37422 0.00014615 0.15683 6.1248E-05 390.5487483603193 61.309 0.24887 60.819 60.715 60.963 -0.48932 19 11 2 0 0 0 0.55144 1 33392 33392 2.4985 0.59211 1 2779600 55343 10226 37300 38123 64204 64204 0.04649103397377985 RVKEIGSTM 9 Unmodified _RVKEIGSTM_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000467636.1_2_13:21721026-21721478:+|nuORF nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7798461914062 2 510.778959 1019.54336 0.97039 0.00049565 -0.23612 -0.0001206 0.73427 0.00037505 510.7790454076913 20.621 0.35481 17.928 17.742 18.096 -2.693 46 21 3 0 0 0 0.062454 2 10961 10961;11075 41.956 9.1699 1 6850100 55344 6057 37301 38124 64205;64206 64205 0.03437499082838258 RVKGPRLRMP 10 Unmodified _RVKGPRLRMP_ 0 0 0 nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX nc|ENSG00000105227|Q9BXM0-3|PRX nc|ENSG00000105227|Q9BXM0-3|PRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9167785644531 3 403.916881 1208.72881 -0.35473 -0.00014328 1.8134 0.00073247 1.4587 0.00058919 403.91782890226125 35.998 0.54877 36.023 35.723 36.272 0.024967 38 25 3 0 0 0 0.70895 2 18969 18969;19192 1.9064 1.4519 1 5563600 55345 2290 37302 38125 64207;64208 64207 0.13279946392935926 RVKISIVTGV 10 Unmodified _RVKISIVTGV_ 0 0 0 REV__ENST00000369239.9_1_6:99848813-99848906:-|nuORF REV__ENST00000369239.9_1_6:99848813-99848906:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3482666015625 2 536.347866 1070.68118 -0.59551 -0.0003194 0.40671 0.00021814 -0.1888 -0.00010126 536.3483167209822 103.28 0.30922 103.24 103.12 103.43 -0.047928 28 12 3 0 0 0 0.72607 1 57331 57331 0 0 1 1966900 + 55346 26031 37303 38126 64209 64209 0.14866570673780188 RVKKLRKKQG 10 Unmodified _RVKKLRKKQG_ 0 0 0 ENST00000529787.2_1_9:100092438-100109914:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF;ENSG00000197816|ENST00000529487|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9|CCDC180 ENST00000529787.2_1_9:100092438-100109914:+|nuORF ENST00000529787.2_1_9:100092438-100109914:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.2828063964844 3 414.282329 1239.82516 NaN NaN NaN NaN NaN NaN NaN 107.15 1 100.97 100.47 101.47 -6.1757 0 0 0 1.0048 1 71685 71685 0.13989 0 1 55347 14877 37304 38127 64210 64210 0.21483837224536728 RVKKRHRRQR 10 Unmodified _RVKKRHRRQR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9717712402344 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 0.89635 1 -1.5856 -2.0856 -1.0856 -2.482 0 0 0 1.0061 1 471 471 0 0 1 55348 5582 37305 38128 64211 64211 0.19925885559018752 RVKKRHRRQR 10 Unmodified _RVKKRHRRQR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.970947265625 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 13.575 1 11.093 10.593 11.593 -2.482 0 0 0 1.0061 1 6879 6879 0 0 1 55349 5582 37305 38128 64212 64212 0.19925885559018752 RVKKRHRRQR 10 Unmodified _RVKKRHRRQR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9721374511719 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 14.234 1 11.731 11.231 12.231 -2.5029 0 0 0 1.0061 1 7217 7217 0 0 1 55350 5582 37305 38128 64213 64213 0.19925885559018752 RVKLLIQLA 9 Unmodified _RVKLLIQLA_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF;ENST00000510757.1_1_5:14387480-14387957:+|nuORF nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1053.38037109375 1 1053.71428 1052.707 -0.95644 -0.0010078 2.4113 0.0025408 1.4548 0.001533 1054.7224352269416 44.833 0.078594 44.833 44.788 44.867 0 5 3 2 0 0 0 0.2191 1 24390 24390 0 0 1 20969000 55351 636 37306 38129 64214 64214 0.18275464916064266 RVKLLLQGG 9 Unmodified _RVKLLLQGG_ 0 0 0 ENST00000475167.6_1_X:1509126-1510935:-|nuORF ENST00000475167.6_1_X:1509126-1510935:-|nuORF ENST00000475167.6_1_X:1509126-1510935:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.321533203125 2 492.321651 982.62875 -0.3351 -0.00016498 0.34328 0.000169 0.0081747 4.0246E-06 492.3216578015674 103.15 0.40366 103.1 102.95 103.36 -0.047928 36 16 3 0 0 0 0.62242 1 57352 57352 0 0 1 2287600 55352 13954 37307 38130 64215 64215 0.13674032330823138 RVKLRVRKSQ 10 Unmodified _RVKLRVRKSQ_ 0 0 0 nc|nan|Q3SXR2|C3orf36 nc|nan|Q3SXR2|C3orf36 nc|nan|Q3SXR2|C3orf36 MSMS AL20221201_MKP_PDAC_01 4 635.415283203125 2 635.414937 1268.81532 NaN NaN NaN NaN NaN NaN NaN 104.68 1 98.502 98.002 99.002 -6.1757 0 0 0 0.99248 1 70085 70085 1.4819 0 1 55353 16662 37308 38131 64216 64216 0.19166649219187093 RVKPGAWL 8 Unmodified _RVKPGAWL_ 0 0 0 REV__ENST00000590677.5_1_19:28284235-28284301:-|nuORF REV__ENST00000590677.5_1_19:28284235-28284301:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7830200195312 2 463.782162 925.549771 0.60718 0.0002816 1.0234 0.00047461 1.6305 0.00075621 463.78260188623995 68.529 0.49335 68.555 68.188 68.681 0.025154 44 24 2 0 0 0 0.80143 1 37541 37541 5.7604 2.8712 1 3449500 + 55354 29151 37309 38132 64217 64217 0.08401805096514181 RVLAWTYTF 9 Unmodified _RVLAWTYTF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.8110961914062 2 578.811116 1155.60768 0.46172 0.00026725 -1.3597 -0.000787 -0.89797 -0.00051975 578.8104052145247 72.978 0.14738 73.019 72.921 73.068 0.041725 11 6 2 0 0 0 0.15471 1 40221 40221 27.629 9.4825 1 2090500 55355 8158 37310 38133 64218 64218 0.03610022231259791 RVLAWTYTF 9 Unmodified _RVLAWTYTF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8087158203125 2 578.811116 1155.60768 1.37 0.00079296 -3.0973 -0.0017928 -1.7274 -0.00099981 579.3097669063179 95.827 0.12971 89.651 89.584 89.714 -6.1757 10 7 2 0 0 0 0.06294 2 63514 63448;63514 41.84 14.55 1 7694000 55356 8158 37310 38133 64219;64220 64220 0.03610022231259791 RVLDELTLA 9 Unmodified _RVLDELTLA_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2 ENSG00000171345|ENST00000361566|KRT19;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3009643554688 2 515.300581 1028.58661 -0.16628 -8.5685E-05 -0.21958 -0.00011315 -0.38586 -0.00019883 515.3004865159976 56.192 0.41796 56.192 56.007 56.424 0 45 19 3 0 0 0 0.078314 1 31203 31203 38.176 5.8701 1 23519000 + 55357 167;173;135;157 37311 38134 64221 64221 0.07346012131779389 RVLDELTLA 9 Unmodified _RVLDELTLA_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;CON__Q6IFX2 ENSG00000171345|ENST00000361566|KRT19;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2996215820312 2 515.300581 1028.58661 -0.56381 -0.00029053 -0.84318 -0.00043449 -1.407 -0.00072502 515.2999740070557 56.62 0.23287 56.134 56.032 56.265 -0.48554 21 14 2 0 0 0 0.078314 1 30754 30754 38.176 4.0731 1 6290200 + 55358 167;173;135;157 37311 38134 64222 64222 0.07346012131779389 RVLHFLMP 8 Unmodified _RVLHFLMP_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7913818359375 2 506.791672 1011.56879 NaN NaN NaN NaN NaN NaN NaN 89.479 1 89.479 88.979 89.979 0 0 0 0 0.97444 1 49509 49509 0.69038 0 1 + 55359 17911 37312 38135 64223 64223 0.06347018395899795 RVLHLQPYIL 10 Unmodified _RVLHLQPYIL_ 0 0 0 REV__ENSG00000221843|ENST00000447166|C2orf16 REV__ENSG00000221843|ENST00000447166|C2orf16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.9253845214844 3 417.923919 1250.74993 NaN NaN NaN NaN NaN NaN NaN 27.547 1 27.5 27 28 -0.046408 0 0 0 1.0019 1 14199 14199 0.15932 0 1 + 55360 24360 37313 38136 64224 64224 0.13458234973472827 RVLKDYFKF 9 Unmodified _RVLKDYFKF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.9009399414062 3 405.901003 1214.68118 0.049609 2.0136E-05 0.072225 2.9316E-05 0.12183 4.9453E-05 405.9008792009598 48.768 0.27295 48.724 48.555 48.828 -0.04369 24 13 2 0 0 0 0.012668 1 26283 26283 75.571 52.913 1 11926000 55361 2727 37314 38137 64225 64225 0.08242570673724003 RVLKDYFKF 9 Unmodified _RVLKDYFKF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3050224-3063461:-|nuORF;ENST00000439280.6_1_11:3050478-3078655:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.9019775390625 3 405.901003 1214.68118 1.1134 0.00045192 0.079119 3.2115E-05 1.1925 0.00048404 405.90128815104026 89.991 0.2991 83.816 83.651 83.951 -6.1757 28 16 2 0 0 0 0.0082548 1 59400 59400 88.364 58.523 1 15590000 55362 2727 37314 38137 64226 64226 0.08242570673724003 RVLLRPLSVP 10 Unmodified _RVLLRPLSVP_ 0 0 0 ENST00000548070.1_1_12:101801029-101801257:-|nuORF ENST00000548070.1_1_12:101801029-101801257:-|nuORF ENST00000548070.1_1_12:101801029-101801257:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3778076171875 2 575.376958 1148.73936 1.6305 0.00093814 -0.61402 -0.00035329 1.0165 0.00058485 575.3763406513332 109.23 0.33449 103.05 102.92 103.25 -6.1757 105 69 2 0 0 0 0.72247 1 73020 73020 0.40072 0 1 2119700 55363 15133 37315 38138 64227 64227 0.17094252319020597 RVLLRPLSVP 10 Unmodified _RVLLRPLSVP_ 0 0 0 ENST00000548070.1_1_12:101801029-101801257:-|nuORF ENST00000548070.1_1_12:101801029-101801257:-|nuORF ENST00000548070.1_1_12:101801029-101801257:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.3773803710938 2 575.376958 1148.73936 NaN NaN NaN NaN NaN NaN NaN 107.92 1 101.74 101.24 102.24 -6.1757 0 0 0 1.0024 1 72149 72149 0.40072 0 1 55364 15133 37315 38138 64228 64228 0.17094252319020597 RVLQMSKML 9 Unmodified _RVLQMSKML_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENST00000593745.1_1_19:59021097-59021388:-|nuORF ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.2120971679688 3 369.212195 1104.61476 -0.056736 -2.0948E-05 0.049026 1.8101E-05 -0.00771 -2.8466E-06 369.21205701621267 55.454 0.25778 55.385 55.178 55.435 -0.068737 19 12 2 0 0 0 0.57331 1 30099 30099 2.9952 2.9952 1 4624600 55365 1374 37316 38139 64229 64229 0.06663295515841128 RVLQWESL 8 Unmodified _RVLQWESL_ 0 0 0 REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7879028320312 2 515.787641 1029.56073 1.4908 0.00076893 -2.0158 -0.0010397 -0.52499 -0.00027078 515.7872488407443 47.681 0.67369 42.447 42.197 42.87 -5.2339 93 40 3 0 0 0 0.40035 1 29743 29743 44.407 0 1 78851000 + 55366 28147 37317 38140 64230 64230 0.04713162680127425 RVLRFNFR 8 Unmodified _RVLRFNFR_ 0 0 0 REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8897399902344 3 369.88932 1106.64613 2.1636 0.00080031 -2.349 -0.00086888 -0.18539 -6.8574E-05 369.88834295130545 105.1 0.068985 98.92 98.867 98.936 -6.1757 15 9 2 0 0 0 0.80232 1 70361 70361 3.5965 1.9439 1 41102000 + 55367 23676 37318 38141 64231 64231 0.09707372656453117 RVLRLKRRH 9 Unmodified _RVLRLKRRH_ 0 0 0 REV__ENST00000495593.1_1_1:18021396-18023872:+|nuORF REV__ENST00000495593.1_1_1:18021396-18023872:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.9418640136719 3 411.942418 1232.80543 NaN NaN NaN NaN NaN NaN NaN 14.636 1 12.133 11.633 12.633 -2.5029 0 0 0 0.85737 1 7448 7448 0.26902 0.033176 1 + 55368 27951 37319 38142 64232 64232 0.19833506004420087 RVLRRVRW 8 Unmodified _RVLRRVRW_ 0 0 0 REV__ENSG00000167191|ENST00000300571|GPRC5B REV__ENSG00000167191|ENST00000300571|GPRC5B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5488891601562 3 380.912348 1139.71521 0.12088 4.6043E-05 3.006 0.001145 3.1269 0.0011911 380.9134213158416 33.994 0.17142 34.023 33.907 34.078 0.028934 10 7 2 0 0 0 8.7369 1 17922 17922 1.6526 0 1 739120 + 55369 22189 37320 38143 64233 64233 0.15094456676024492 RVLRTDCA 8 Unmodified _RVLRTDCA_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2496337890625 2 467.250369 932.486184 0.65537 0.00030622 -3.8865 -0.001816 -3.2312 -0.0015098 467.24948044934075 101.79 0.38306 95.616 95.574 95.957 -6.1757 79 22 4 0 0 0 0.80676 1 68445 68445 2.5775 0 1 60049000 + 55370 23845 37321 38144 64234 64234 0.017240765970996108 RVLRWVRWA 9 Unmodified _RVLRWVRWA_ 0 0 0 REV__GPRC5B|p.R148W|1|0.04|ENSG00000167191|chr16:19872404-19872404|G/A|missense_variant REV__GPRC5B|p.R148W|1|0.04|ENSG00000167191|chr16:19872404-19872404|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.37255859375 2 621.372541 1240.73053 NaN NaN NaN NaN NaN NaN NaN 79.966 1 79.966 79.466 80.466 0 0 0 0 0.8622 1 44407 44407 0 0 1 + 55371 29355 37322 38145 64235 64235 0.11979323473224213 RVMAEEGLRV 10 Unmodified _RVMAEEGLRV_ 0 0 0 nc|ENSG00000204427|O95870-2|ABHD16A;ENST00000492084.5_1_6:31654991-31670409:-|nuORF;ENSG00000204427|ENST00000395952|ABHD16A;ENST00000490209.5_1_6:31655268-31655864:-|nuORF;ENST00000475742.5_1_6:31654991-31656600:-|nuORF nc|ENSG00000204427|O95870-2|ABHD16A nc|ENSG00000204427|O95870-2|ABHD16A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5514526367188 3 387.213252 1158.61793 NaN NaN NaN NaN NaN NaN NaN 21.048 1 21.059 20.559 21.559 0.010553 0 0 0 0.97784 1 10756 10756 3.0723 0.57378 1 55372 16507 37323 38146 64236 64236 0.0449626189420087 RVMAPRALL 9 Unmodified _RVMAPRALL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.31640625 2 513.815679 1025.6168 0.62724 0.00032229 -1.2733 -0.00065426 -0.6461 -0.00033198 513.815125813497 40.751 0.26482 40.75 40.587 40.851 -0.0017929 24 12 3 0 0 0 0.026094 1 21734 21734 57.471 34.323 1 5615300 55373 10298 37324 38147 64237 64237 0.10502092315959999 RVMAPRALL 9 Unmodified _RVMAPRALL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8153686523438 2 513.815679 1025.6168 0.27172 0.00013961 -0.15948 -8.1945E-05 0.11224 5.7669E-05 513.8157606587043 45.279 0.568 40.324 40.03 40.598 -4.9549 126 38 4 0 0 0 0.015445 3 27602 27602;27743;27885 68.081 51.138 1 296380000 55374 10298 37324 38147 64238;64239;64240 64238 0.10502092315959999 RVMEELPLMLL 11 2 Oxidation (M) _RVM(Oxidation (M))EELPLM(Oxidation (M))LL_ RVM(1)EELPLM(1)LL RVM(53)EELPLM(53)LL 0 0 2 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.3707275390625 2 688.369823 1374.72509 1.3334 0.00091785 -1.2112 -0.00083375 0.12217 8.4096E-05 688.369074401741 98.141 0.21008 91.966 91.847 92.057 -6.1757 26 13 3 0 0 0 0.038834 1 65066 65066 53.317 31.78 1 28197000 55375 8367 37325 38148 64241 64241 1419;1420 0.05272050993585253 RVMEELPLMLL 11 Oxidation (M) _RVMEELPLM(Oxidation (M))LL_ RVMEELPLM(1)LL RVM(-120)EELPLM(120)LL 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.3737182617188 2 680.372366 1358.73018 1.0897 0.00074143 -0.22376 -0.00015224 0.86598 0.00058919 680.3724985294112 99.516 0.17145 93.341 93.261 93.432 -6.1757 27 10 4 0 0 0 1.2E-11 1 66300 66300 128.93 99.851 2 82456000 55376 8367 37325 38149 64242 64242 1419;1420 0.06516354856194084 RVMEELPLMLL 11 Oxidation (M) _RVM(Oxidation (M))EELPLMLL_ RVM(1)EELPLMLL RVM(40)EELPLM(-40)LL 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.37353515625 2 680.372366 1358.73018 1.4483 0.00098541 -0.2506 -0.0001705 1.1977 0.00081491 680.372383025559 100.03 0.16974 93.85 93.769 93.938 -6.1757 29 11 4 0 0 0 0.06459 1 66794 66794 47.732 29.586 2 56294000 55377 8367 37325 38149 64243 64243 1419;1420 0.06516354856194084 RVMEELPLMLL 11 Oxidation (M) _RVMEELPLM(Oxidation (M))LL_ 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 680.372366 1358.73018 2.0475 0.0013931 -0.79987 -0.00054421 1.2477 0.00084887 680.3718916038408 93.511 0.24179 93.534 93.426 93.667 0.022987 0.09645 -0.00070839 NaN 128.93 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1569400 55378 8367 37325 38149 1419;1420 0.06516354856194084 RVMEELPLMLL 11 Unmodified _RVMEELPLMLL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.3750610351562 2 672.374909 1342.73526 1.278 0.00085928 -0.41972 -0.00028221 0.85825 0.00057707 672.3749619524077 100.98 0.15505 94.806 94.734 94.889 -6.1757 23 8 4 0 0 0 0.06459 1 67655 67655 47.732 25.074 1 150590000 55379 8367 37325 38150 64244 64244 0.07760658718802915 RVMGDRSVL 9 Unmodified _RVMGDRSVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 516.7855834960938 2 516.784576 1031.5546 NaN NaN NaN NaN NaN NaN NaN 30.351 1 26.854 26.354 27.354 -3.497 0 0 0 0.090869 1 17126 17126 45.74 1.8816 1 55380 4010 37326 38151 64245 64245 0.040083211769797344 RVMIIRTML 9 Unmodified _RVMIIRTML_ 0 0 0 ENSG00000175792|ENST00000322623|RUVBL1;nc|ENSG00000175792|Q9Y265-2|RUVBL1;ENST00000480616.1_1_3:127802810-127806605:-|nuORF;ENST00000478243.1_1_3:127803929-127806605:-|nuORF ENSG00000175792|ENST00000322623|RUVBL1;ENST00000478243.1_1_3:127803929-127806605:-|nuORF ENSG00000175792|ENST00000322623|RUVBL1 MSMS AL20221201_MKP_PDAC_01 4 378.2286682128906 3 378.227957 1131.66204 NaN NaN NaN NaN NaN NaN NaN 91.292 1 85.116 84.616 85.616 -6.1757 0 0 0 0.096094 1 60345 60345 44.392 10.17 1 55381 8541;14011 37327 38152 64246 64246 0.1014757478685624 RVMRMDSRPIW 11 Unmodified _RVMRMDSRPIW_ 0 0 0 REV__ENST00000569173.5_2_15:72533824-72552901:-|nuORF REV__ENST00000569173.5_2_15:72533824-72552901:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.8771362304688 2 723.876473 1445.73839 0.61129 0.0004425 -0.54038 -0.00039117 0.070905 5.1326E-05 723.8759500579642 100.54 0.16042 94.362 94.27 94.431 -6.1757 29 9 4 0 0 0 0.56638 1 67234 67234 13.042 3.6593 1 148160000 + 55382 28958 37328 38153 64247 64247 0.033353466161770484 RVMSSLLDM 9 Unmodified _RVMSSLLDM_ 0 0 0 ENST00000475860.1_1_2:242038724-242041688:-|nuORF;ENSG00000122085|ENST00000391980|MTERF4 ENST00000475860.1_1_2:242038724-242041688:-|nuORF ENST00000475860.1_1_2:242038724-242041688:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.18017578125 3 351.180672 1050.52019 NaN NaN NaN NaN NaN NaN NaN 83.627 1 77.451 76.951 77.951 -6.1757 0 0 0 0.84211 1 54997 54997 2.4985 1.0166 1 55383 3622 37329 38154 64248 64248 -0.0030526302614362066 RVNLAKPMRIK 11 Unmodified _RVNLAKPMRIK_ 0 0 0 ENST00000482751.5_1_1:40208803-40219024:+|nuORF;nc|ENSG00000084072|Q9UNP9-2|PPIE;ENSG00000084072|ENST00000324379|PPIE;nc|ENSG00000084072|Q9UNP9-3|PPIE;ENST00000495526.5_1_1:40207631-40211283:+|nuORF ENST00000482751.5_1_1:40208803-40219024:+|nuORF ENST00000482751.5_1_1:40208803-40219024:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.4169311523438 2 663.413549 1324.81254 NaN NaN NaN NaN NaN NaN NaN 78.476 1 78.476 77.976 78.976 0 0 0 0 0.94307 1 43610 43610 0.30703 0.30703 1 55384 1380 37330 38155 64249 64249 0.1631305777000307 RVNNTIVWT 9 Unmodified _RVNNTIVWT_ 0 0 0 ABCB11|p.C107R|1|0.25|ENSG00000073734|chr2:169013342-169013342|A/G|missense_variant ABCB11|p.C107R|1|0.25|ENSG00000073734|chr2:169013342-169013342|A/G|missense_variant ABCB11|p.C107R|1|0.25|ENSG00000073734|chr2:169013342-169013342|A/G|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 367.7059936523438 3 368.204974 1101.59309 1.4229 0.00052391 0.055161 2.031E-05 1.478 0.00054422 368.20518673670654 18.806 0.3438 16.184 15.99 16.334 -2.6215 52 25 3 0 0 0 0.21021 1 9832 9832 4.5289 4.5289 1 5341900 55385 2 37331 38156 64250 64250 0.04635950083138596 RVPFFDPMS 9 Unmodified _RVPFFDPMS_ 0 0 0 REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8480529785156 3 365.84791 1094.5219 NaN NaN NaN NaN NaN NaN NaN 36.033 1 36.058 35.558 36.558 0.024967 0 0 0 0.84564 1 19077 19077 1.0715 0.3738 1 + 55386 21936 37332 38157 64251 64251 -0.02157885945871385 RVPGVRPLAT 10 Unmodified _RVPGVRPLAT_ 0 0 0 REV__ENSG00000184371|ENST00000329608|CSF1 REV__ENSG00000184371|ENST00000329608|CSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3305053710938 2 533.330008 1064.64546 1.526 0.00081385 -1.209 -0.00064478 0.317 0.00016906 533.3292544908346 105.17 0.14975 98.994 98.918 99.068 -6.1757 72 33 3 0 0 0 0.69917 1 70427 70427 2.9952 1.151 1 250710000 + 55387 23416 37333 38158 64252 64252 0.11572533216735792 RVPNKACF 8 Unmodified _RVPNKACF_ 0 0 0 REV__ENSG00000124786|ENST00000644923|SLC35B3 REV__ENSG00000124786|ENST00000644923|SLC35B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7515563964844 2 467.750005 933.485456 NaN NaN NaN NaN NaN NaN NaN 86.038 1 86.038 85.538 86.538 0 0 0 0 0.97444 1 47665 47665 0.69038 0.088878 1 + 55388 19471 37334 38159 64253 64253 0.016052819480592007 RVPPLRRRQ 9 Unmodified _RVPPLRRRQ_ 0 0 0 REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 REV__nc|ENSG00000198488|Q6ZMB0-2|B3GNT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.2512512207031 3 393.25114 1176.73159 NaN NaN NaN NaN NaN NaN NaN 53.874 1 53.407 52.907 53.907 -0.46664 0 0 0 0.86004 1 29165 29165 0.26902 0 1 + 55389 29897 37335 38160 64254 64254 0.15029537842110585 RVPPPPHGA 9 Unmodified _RVPPPPHGA_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MSMS AL20221201_MKP_PDAC_01 4 464.2621459960938 2 464.261594 926.508634 NaN NaN NaN NaN NaN NaN NaN 16.935 1 14.348 13.848 14.848 -2.5866 0 0 0 0.10545 1 8812 8812 42.095 4.1206 1 55390 2778 37336 38161 64255 64255 0.04244044057031715 RVPTPLQQPHL 11 Unmodified _RVPTPLQQPHL_ 0 0 0 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 ENSG00000198646|ENST00000359003|NCOA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.25048828125 3 429.250695 1284.73025 0.90829 0.00038989 -0.46973 -0.00020163 0.43856 0.00018825 429.2504256496987 75.454 1.8608 69.279 68.759 70.62 -6.1757 201 101 3 0 0 0 0.50515 2 49090 49090;49707 9.2438 0.95734 1 23716000 55391 10117 37337 38162 64256;64257 64256 0.09927858962714708 RVPVFPVCPRP 11 Unmodified _RVPVFPVCPRP_ 0 0 0 REV__ENST00000592895.5_1_19:1985822-1986326:-|nuORF REV__ENST00000592895.5_1_19:1985822-1986326:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.9102478027344 3 422.909504 1265.70668 NaN NaN NaN NaN NaN NaN NaN 16.503 1 16.503 16.003 17.003 0 0 0 0 0.94307 1 8053 8053 0.08335 0 1 + 55392 29183 37338 38163 64258 64258 0.08445721924522331 RVQCKQAIL 9 Unmodified _RVQCKQAIL_ 0 0 0 REV__nc|ENSG00000147679|Q9BRU9-2|UTP23 REV__nc|ENSG00000147679|Q9BRU9-2|UTP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8114624023438 2 529.810593 1057.60663 -0.13113 -6.9474E-05 0.65051 0.00034465 0.51938 0.00027517 529.8110809484695 37.344 0.25591 37.366 37.263 37.519 0.021545 25 11 3 0 0 0 0.14602 1 19827 19827 28.487 1.6032 1 4485200 + 55393 20908 37339 38164 64259 64259 0.08013484590742337 RVQCKQAIL 9 Unmodified _RVQCKQAIL_ 0 0 0 REV__nc|ENSG00000147679|Q9BRU9-2|UTP23 REV__nc|ENSG00000147679|Q9BRU9-2|UTP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5430908203125 3 353.542821 1057.60663 -0.23943 -8.4649E-05 1.9996 0.00070693 1.7601 0.00062228 353.5437231822448 37.388 0.21748 37.409 37.285 37.502 0.021545 14 9 2 0 0 0 0.43463 1 19862 19862 7.1017 0 1 1721500 + 55394 20908 37339 38164 64260 64260 0.08013484590742337 RVQDKYFHI 9 Unmodified _RVQDKYFHI_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.5523986816406 3 402.552374 1204.63529 -0.26524 -0.00010677 0.018827 7.5787E-06 -0.24642 -9.9195E-05 402.5524702366074 34.756 0.23722 34.565 34.44 34.677 -0.19131 24 10 3 0 0 0 0.044296 1 18182 18182 47.594 36.695 1 27710000 55395 7112 37340 38165 64261 64261 0.04115925491510097 RVQDKYFHI 9 Unmodified _RVQDKYFHI_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2124633789062 3 402.552374 1204.63529 -0.096186 -3.872E-05 0.80811 0.00032531 0.71193 0.00028659 402.55272499990224 34.519 0.25224 34.547 34.416 34.668 0.027401 21 11 2 0 0 0 0.10852 1 18232 18232 40.239 30.695 1 10291000 55396 7112 37340 38165 64262 64262 0.04115925491510097 RVQDKYFHI 9 Unmodified _RVQDKYFHI_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5533142089844 3 402.552374 1204.63529 0.95517 0.00038451 0.41557 0.00016729 1.3707 0.0005518 402.5528120329381 38.221 0.42225 33.852 33.636 34.058 -4.3689 66 25 3 0 0 0 0.024189 1 22573 22573 59.368 42.803 1 81724000 55397 7112 37340 38165 64263 64263 0.04115925491510097 RVQDKYFHI 9 Unmodified _RVQDKYFHI_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MSMS AL20221201_MKP_PDAC_01 4 402.5537719726562 3 402.552374 1204.63529 NaN NaN NaN NaN NaN NaN NaN 65.559 1 59.383 58.883 59.883 -6.1757 0 0 0 0.38798 1 42559 42559 20.581 12.425 1 55398 7112 37340 38165 64264 64264 0.04115925491510097 RVQDKYFHI 9 Unmodified _RVQDKYFHI_ 0 0 0 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2;nc|ENSG00000163995|Q6H8Q1-8|ABLIM2;nc|ENSG00000163995|Q6H8Q1-3|ABLIM2;nc|ENSG00000163995|Q6H8Q1-7|ABLIM2;nc|ENSG00000163995|Q6H8Q1-2|ABLIM2;nc|ENSG00000163995|Q6H8Q1-5|ABLIM2;nc|ENSG00000163995|Q6H8Q1|ABLIM2;ENSG00000163995|ENST00000447017|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 nc|ENSG00000163995|Q6H8Q1-6|ABLIM2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 402.552374 1204.63529 -0.64335 -0.00025898 0.19594 7.8875E-05 -0.44741 -0.00018011 402.5524228940928 34.636 0.21521 34.636 34.518 34.733 0 0.053582 -0.00011037 NaN 47.594 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4523200 55399 7112 37340 38165 0.04115925491510097 RVQDVFSERE 10 Unmodified _RVQDVFSERE_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.8179931640625 2 632.817658 1263.62076 -0.36479 -0.00023085 -0.96331 -0.0006096 -1.3281 -0.00084044 632.817188841954 20.686 0.19517 20.686 20.589 20.784 0 29 12 3 0 0 0 0.57893 1 10407 10407 12.241 0 1 2742400 + 55400 29496 37341 38166 64265 64265 -0.0005019144730340486 RVQDVFSERE 10 Unmodified _RVQDVFSERE_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 632.817658 1263.62076 -0.36479 -0.00023085 -0.96331 -0.0006096 -1.3281 -0.00084044 632.817188841954 20.686 0.19517 20.686 20.589 20.784 0 0.039714 -4.3217E-05 NaN 12.241 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2742400 + 55401 29496 37341 38166 -0.0005019144730340486 RVQDVRRLL 9 Unmodified _RVQDVRRLL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.5749816894531 3 385.575401 1153.70437 0.014918 5.7519E-06 -0.75441 -0.00029088 -0.7395 -0.00028513 385.5750875316941 33.621 0.24237 33.65 33.503 33.745 0.028934 25 10 3 0 0 0 0.10734 1 17669 17669 29.841 19.041 1 4650800 55402 6239;13571 37342 38167 64266 64266 0.13367009511102879 RVQDVRRLL 9 Unmodified _RVQDVRRLL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.5755615234375 3 385.575401 1153.70437 1.6216 0.00062525 -0.44188 -0.00017038 1.1797 0.00045488 385.5753199775581 37.59 0.45425 33.259 33.039 33.493 -4.3315 42 26 2 0 0 0 0.095405 2 22060 22060;22200 31.268 16.02 1 14651000 55403 6239;13571 37342 38167 64267;64268 64267 0.13367009511102879 RVQHRALEL 9 Unmodified _RVQHRALEL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8899841308594 3 374.556118 1120.64652 0.79259 0.00029687 -0.27716 -0.00010381 0.51542 0.00019305 374.5557440648188 24.335 0.38391 21.507 21.34 21.724 -2.8273 38 21 3 0 0 0 0.14594 1 13198 13198 28.495 9.1326 1 10313000 55404 6383 37343 38168 64269 64269 0.09102747585643556 RVQKELHEL 9 Unmodified _RVQKELHEL_ 0 0 0 REV__ENSG00000184992|ENST00000341446|BRI3BP REV__ENSG00000184992|ENST00000341446|BRI3BP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5563049316406 3 384.555895 1150.64586 NaN NaN NaN NaN NaN NaN NaN 16.281 1 16.282 15.782 16.782 0.0010548 0 0 0 0.85798 1 8022 8022 0.23584 0 1 + 55405 23459 37344 38169 64270 64270 0.0765590814596635 RVQKIRPSI 9 Unmodified _RVQKIRPSI_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2369995117188 3 366.236497 1095.68766 NaN NaN NaN NaN NaN NaN NaN 19.338 1 19.346 18.846 19.846 0.0078487 0 0 0 0.56988 1 9834 9834 13.615 2.1202 1 55406 10861 37345 38170 64271 64271 0.14364508625135386 RVQKIRPSI 9 Unmodified _RVQKIRPSI_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2375183105469 3 366.236497 1095.68766 1.6346 0.00059863 -0.028933 -1.0596E-05 1.6056 0.00058804 366.23665423417265 21.881 0.32523 19.147 18.995 19.32 -2.7348 42 18 3 0 0 0 0.013396 1 11717 11717 70.929 43.705 1 7806000 55407 10861 37345 38170 64272 64272 0.14364508625135386 RVQNHTILVY 10 Unmodified _RVQNHTILVY_ 0 0 0 REV__ERBB2|p.A87T|1|0.2|ENSG00000141736|chr17:39708354-39708354|G/A|missense_variant REV__ERBB2|p.A87T|1|0.2|ENSG00000141736|chr17:39708354-39708354|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.904296875 3 414.903295 1241.68806 -0.32365 -0.00013428 0.60296 0.00025017 0.27931 0.00011589 414.90357092540273 36.873 0.32262 36.623 36.45 36.773 -0.2497 34 14 3 0 0 0 0.48505 1 19341 19341 10.899 0 1 8175000 + 55408 29340 37346 38171 64273 64273 0.07687883554331165 RVQNHTILVY 10 Unmodified _RVQNHTILVY_ 0 0 0 REV__ERBB2|p.A87T|1|0.2|ENSG00000141736|chr17:39708354-39708354|G/A|missense_variant REV__ERBB2|p.A87T|1|0.2|ENSG00000141736|chr17:39708354-39708354|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2389526367188 3 414.903295 1241.68806 0.47988 0.0001991 1.0406 0.00043174 1.5205 0.00063084 414.9037635323303 41.325 0.48466 36.717 36.467 36.952 -4.6079 70 31 3 0 0 0 0.18021 1 24872 24872 24.882 0 1 34639000 + 55409 29340 37346 38171 64274 64274 0.07687883554331165 RVQRPIVRLLS 11 Unmodified _RVQRPIVRLLS_ 0 0 0 ENSG00000107951|ENST00000263063|MTPAP ENSG00000107951|ENST00000263063|MTPAP ENSG00000107951|ENST00000263063|MTPAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.9309692382812 2 668.93042 1335.84629 NaN NaN NaN NaN NaN NaN NaN 90.258 1 89.757 89.257 90.257 -0.50171 0 0 0 0.9435 1 49339 49339 0 0 1 55410 2535 37347 38172 64275 64275 0.19179802533426482 RVRDFVAKL 9 Unmodified _RVRDFVAKL_ 0 0 0 ENSG00000134243|ENST00000256637|SORT1 ENSG00000134243|ENST00000256637|SORT1 ENSG00000134243|ENST00000256637|SORT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5609741210938 3 368.560981 1102.66111 0.10007 3.6882E-05 0.28184 0.00010388 0.38191 0.00014076 368.56104372701276 34.216 0.27023 34.244 34.078 34.348 0.028278 28 12 3 0 0 0 0.047788 1 17994 17994 35.612 15.198 1 6816700 55411 4574 37348 38173 64276 64276 0.11388819733792843 RVREAENVAF 10 Unmodified _RVREAENVAF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5460510253906 3 397.5474 1189.62037 NaN NaN NaN NaN NaN NaN NaN 28.036 1 28.036 27.536 28.536 0 0 0 0 0.85834 1 14465 14465 9.7643 0.788 1 55412 8367 37349 38174 64277 64277 0.03314433623495461 RVREFVGQL 9 Unmodified _RVREFVGQL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5492248535156 3 368.548852 1102.62473 -0.29232 -0.00010773 0.16874 6.2191E-05 -0.12357 -4.5542E-05 368.54899775446853 36.539 0.29114 36.561 36.393 36.684 0.021545 27 13 3 0 0 0 0.07087 1 19346 19346 30.703 8.0454 1 10480000 55413 8834 37350 38175 64278 64278 0.07751942837103343 RVREFVGQL 9 Unmodified _RVREFVGQL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8203735351562 2 552.31964 1102.62473 -0.19091 -0.00010544 -0.86328 -0.00047681 -1.0542 -0.00058225 552.3192130134902 36.538 0.20608 36.56 36.434 36.64 0.021545 16 9 2 0 0 0 0.06294 1 19354 19354 41.84 9.5341 1 5091800 55414 8834 37350 38175 64279 64279 0.07751942837103343 RVREFVGQL 9 Unmodified _RVREFVGQL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8154907226562 2 552.31964 1102.62473 1.0636 0.00058745 -3.4471 -0.0019039 -2.3835 -0.0013165 552.3187024709691 41.034 0.47421 36.426 36.165 36.639 -4.6079 48 29 2 0 0 0 0.14 1 24537 24537 29.082 5.061 1 16239000 55415 8834 37350 38175 64280 64280 0.07751942837103343 RVREFVGQL 9 Unmodified _RVREFVGQL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5497131347656 3 368.548852 1102.62473 1.6144 0.00059498 -0.29269 -0.00010787 1.3217 0.00048711 368.54866537486447 41.045 0.44344 36.437 36.227 36.671 -4.6079 46 27 3 0 0 0 0.10247 1 24610 24610 24.882 9.6331 1 25164000 55416 8834 37350 38175 64281 64281 0.07751942837103343 RVREQLVL 8 Unmodified _RVREQLVL_ 0 0 0 REV__ENSG00000008853|ENST00000251822|RHOBTB2 REV__ENSG00000008853|ENST00000251822|RHOBTB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.818115234375 2 506.816733 1011.61891 0.9356 0.00047418 -0.21307 -0.00010799 0.72253 0.00036619 506.81674648161106 32.184 0.33298 28.328 28.161 28.494 -3.8562 33 19 2 0 0 0 0.71527 1 18398 18398 15.847 0 1 33897000 + 55417 17030 37351 38176 64282 64282 0.11356844325405291 RVRFQSHGL 9 Unmodified _RVRFQSHGL_ 0 0 0 ENSG00000138381|ENST00000260952|ASNSD1 ENSG00000138381|ENST00000260952|ASNSD1 ENSG00000138381|ENST00000260952|ASNSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2091979980469 3 367.20883 1098.60466 0.74771 0.00027456 -0.74298 -0.00027283 0.0047234 1.7345E-06 367.208699036928 23.064 0.29472 20.286 20.103 20.397 -2.7784 44 19 4 0 0 0 0.20507 1 12410 12410 22.658 5.5452 1 12349000 55418 5045 37352 38177 64283 64283 0.059301918971414125 RVRHFDQFW 9 Unmodified _RVRHFDQFW_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8883361816406 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 36.206 1 35.956 35.456 36.456 -0.2497 0 0 0 0.85737 1 18987 18987 0.26902 0 1 55419 16152 37353 38178 64284 64284 0.00853863442898728 RVRKLPSTTL 10 Unmodified _RVRKLPSTTL_ 0 0 0 nc|ENSG00000117676|Q15418-3|RPS6KA1;nc|ENSG00000117676|Q15418-4|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.915283203125 3 390.915423 1169.72444 0.20365 7.9608E-05 -0.014127 -5.5225E-06 0.18952 7.4086E-05 390.91551452165464 25.827 0.28892 22.876 22.68 22.969 -2.9511 34 18 2 0 0 0 0.19566 1 14131 14131 34.222 10.421 1 12786000 55420 3330 37354 38179 64285 64285 0.1463676045102602 RVRLPDGCL 9 Unmodified _RVRLPDGCL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7887573242188 2 514.787118 1027.55968 NaN NaN NaN NaN NaN NaN NaN 88.581 1 88.581 88.081 89.081 0 0 0 0 0.84564 1 49027 49027 2.0598 1.2661 1 55421 7653 37355 38180 64286 64286 0.04700625039595252 RVRLQLATL 9 Unmodified _RVRLQLATL_ 0 0 0 ENSG00000233493|ENST00000444469|TMEM238 ENSG00000233493|ENST00000444469|TMEM238 ENSG00000233493|ENST00000444469|TMEM238 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2331848144531 3 357.232864 1068.67676 0.3096 0.0001106 0.35296 0.00012609 0.66256 0.00023669 357.23310323469843 48.178 0.25658 48.139 47.988 48.244 -0.038647 27 12 3 0 0 0 0.40476 1 26028 26028 12.241 3.4953 1 2710700 55422 10631 37356 38181 64287 64287 0.1451710625085525 RVRPGGGGG 9 Unmodified _RVRPGGGGG_ 0 0 0 ENST00000456458.5_1_7:33075577-33102405:-|nuORF ENST00000456458.5_1_7:33075577-33102405:-|nuORF ENST00000456458.5_1_7:33075577-33102405:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.72802734375 2 406.727918 811.441283 0.18138 7.3773E-05 0.10503 4.2718E-05 0.28641 0.00011649 406.72786859213244 74.818 0.43028 74.818 74.604 75.035 0 47 21 3 0 0 0 0.62242 1 41663 41663 0 0 1 3395900 55423 13600 37357 38182 64288 64288 0.02802013846110185 RVRPKVTVL 9 Unmodified _RVRPKVTVL_ 0 0 0 ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF ENSG00000135362|ENST00000530639|PRR5L ENSG00000135362|ENST00000530639|PRR5L MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5733337402344 3 356.573109 1066.6975 1.1507 0.0004103 -0.4376 -0.00015604 0.71307 0.00025426 356.57305689747403 27.378 0.32211 24.341 24.219 24.541 -3.0365 34 15 3 0 0 0 0.27545 1 15154 15154 18.373 4.7582 1 28983000 55424 4695 37358 38183 64289 64289 0.16681696630507759 RVRPQPLL 8 Unmodified _RVRPQPLL_ 0 0 0 REV__ENSG00000064687|ENST00000263094|ABCA7 REV__ENSG00000064687|ENST00000263094|ABCA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.8139343261719 2 489.813993 977.613434 0.27138 0.00013292 -0.092817 -4.5463E-05 0.17856 8.7461E-05 489.81391453635354 35.155 0.38337 35.182 34.947 35.33 0.027401 29 17 2 0 0 0 0.67481 1 18522 18522 19.439 1.304 1 2607000 + 55425 17359 37359 38184 64290 64290 0.12373165533620067 RVRPRRPRRR 10 Unmodified _RVRPRRPRRR_ 0 0 0 ENST00000371873.9_1_1:47799697-47834181:+|nuORF ENST00000371873.9_1_1:47799697-47834181:+|nuORF ENST00000371873.9_1_1:47799697-47834181:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.9806823730469 4 351.980347 1403.89228 0.028425 1.0005E-05 0.87296 0.00030727 0.90139 0.00031727 351.9804461081221 45.513 0.22488 45.513 45.46 45.685 0 16 11 2 0 0 0 0.72482 1 24887 24887 0.13989 0 1 4428000 55426 12368 37360 38185 64291 64291 0.20649305278834618 RVRRLTPRKFK 11 Unmodified _RVRRLTPRKFK_ 0 0 0 REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 728.9712524414062 2 728.970411 1455.92627 1.4297 0.0010422 -0.54338 -0.00039611 0.8863 0.00064609 728.969888591297 104.98 0.16149 98.8 98.705 98.867 -6.1757 36 11 4 0 0 0 0.7453 1 70235 70235 0 0 1 224770000 + 55427 19689 37361 38186 64292 64292 0.2165428892719774 RVRRLTPRKFK 11 Unmodified _RVRRLTPRKFK_ 0 0 0 REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF REV__ENST00000585806.5_1_19:55663204-55667835:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3164672851562 3 486.316033 1455.92627 1.5912 0.0007738 -0.10684 -5.1957E-05 1.4843 0.00072185 486.31591219113784 104.97 0.13551 98.798 98.705 98.841 -6.1757 29 9 4 0 0 0 0.7453 1 70245 70245 0 0 1 89399000 + 55428 19689 37361 38186 64293 64293 0.2165428892719774 RVRRRKTRRER 11 Unmodified _RVRRRKTRRER_ 0 0 0 ENSG00000188368|ENST00000341747|PRR19;nc|ENSG00000188368|A6NJB7-2|PRR19 ENSG00000188368|ENST00000341747|PRR19 ENSG00000188368|ENST00000341747|PRR19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.7264404296875 2 784.993272 1567.97199 NaN NaN NaN NaN NaN NaN NaN 92.387 1 92.417 91.917 92.917 0.030197 0 0 0 0.9435 1 51374 51374 0 0 1 55429 9653 37362 38187 64294 64294 0.2107232716218732 RVRVPTTGI 9 Unmodified _RVRVPTTGI_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14;ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENSG00000088256|ENST00000078429|GNA11;ENST00000444815.2_1_2:132181395-132181932:-|nuORF ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8094177246094 2 499.808908 997.603263 1.2696 0.00063458 0.054673 2.7326E-05 1.3243 0.00066191 499.80909897653527 34.281 0.56898 30.296 29.842 30.411 -3.9853 59 31 2 0 0 0 0.20428 1 19524 19524 22.736 9.6938 1 18749000 55430 1481;13443 37363 38188 64295 64295 0.10436557808372982 RVRVSGQGL 9 Unmodified _RVRVSGQGL_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2908630371094 2 486.290882 970.567212 1.2251 0.00059577 -0.29966 -0.00014572 0.92546 0.00045004 486.29059792873096 21.446 0.3525 18.711 18.583 18.935 -2.7348 78 32 3 0 0 0 0.34999 2 11444 11444;11557 14.838 4.0143 1 23311000 55431 9884 37364 38189 64296;64297 64296 0.08075100631526766 RVRWGKERWRW 11 Unmodified _RVRWGKERWRW_ 0 0 0 REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF REV__ENST00000412084.1_1_12:10095162-10095989:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.5563354492188 2 807.947467 1613.88038 NaN NaN NaN NaN NaN NaN NaN 107.65 1 107.61 107.11 108.11 -0.047607 0 0 0 0.9435 1 59640 59640 0 0 1 + 55432 26720 37365 38190 64298 64298 0.09799643745009234 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7899780273438 2 532.790381 1063.56621 -0.34695 -0.00018485 0.15399 8.2045E-05 -0.19296 -0.0001028 532.7904705433323 61.035 0.36205 60.546 60.353 60.715 -0.48932 48 17 4 0 0 0 0.094149 1 33194 33194 34.402 2.0962 1 58567000 55433 16693 37366 38191 64299 64299 0.036968414719467546 RVSDINFTL 9 Unmodified _RVSDINFTL_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3 PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7910766601562 2 532.790381 1063.56621 0.33298 0.00017741 -0.46261 -0.00024647 -0.12964 -6.9069E-05 532.7901178013699 60.711 0.23152 60.667 60.533 60.765 -0.04351 17 11 2 0 0 0 0.094149 1 33120 33120 34.402 0 1 3997200 55434 16693 37366 38191 64300 64300 0.036968414719467546 RVSLVRKEL 9 Unmodified _RVSLVRKEL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2359924316406 3 367.236385 1098.68733 0.10948 4.0204E-05 -0.68028 -0.00024982 -0.57081 -0.00020962 367.2363760745583 22.967 0.12233 22.984 22.89 23.012 0.01749 9 6 2 0 0 0 0.012803 1 11795 11795 72.59 38.368 1 5387700 55435 5325 37367 38192 64301 64301 0.14193088905290097 RVSLVRKEL 9 Unmodified _RVSLVRKEL_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2365417480469 3 367.236385 1098.68733 1.1386 0.00041813 0.38591 0.00014172 1.5245 0.00055985 367.2365543542147 26.606 0.44473 23.655 23.358 23.803 -2.9511 52 23 3 0 0 0 0.018846 2 14632 14632;14750 64.692 26.92 1 43456000 55436 5325 37367 38192 64302;64303 64302 0.14193088905290097 RVSPYWSGW 9 Unmodified _RVSPYWSGW_ 0 0 0 AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|15|1|anti-sense AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|15|1|anti-sense AluSq_dup1109|chr1:161212562-161212852:-|1.0292673456314485|0.0170353827791468|5.92|179.0|15|1|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2799682617188 2 569.277441 1136.54033 NaN NaN NaN NaN NaN NaN NaN 96.998 1 96.998 96.498 97.498 0 0 0 0 0.82396 1 53599 53599 4.756 0 1 55437 23 37368 38193 64304 64304 -0.022480079796650898 RVSRHLAAL 9 Unmodified _RVSRHLAAL_ 0 0 0 REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 REV__nc|ENSG00000163354|Q5T1A1-2|DCST2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8145446777344 2 511.814525 1021.6145 0.41778 0.00021382 0.38541 0.00019726 0.80319 0.00041108 511.8148526829918 22.435 0.29384 19.657 19.498 19.792 -2.7784 35 15 3 0 0 0 0.044011 2 12019 12019;12119 47.749 0 1 11347000 + 55438 21752 37369 38194 64305;64306 64305 0.10455379902521145 RVSRILMFLS 10 Unmodified _RVSRILMFLS_ 0 0 0 nc|ENSG00000177300|Q8N7P3|CLDN22;ENSG00000185758|ENST00000541814|CLDN24 nc|ENSG00000177300|Q8N7P3|CLDN22 nc|ENSG00000177300|Q8N7P3|CLDN22 MSMS AL20221201_MKP_PDAC_01 4 610.890869140625 2 611.36045 1220.70635 NaN NaN NaN NaN NaN NaN NaN 107.63 1 101.45 100.95 101.95 -6.1757 0 0 0 0.9997 1 71974 71974 1.6526 0.17072 1 55439 9409 37370 38195 64307 64307 0.1048230220469577 RVSRSCFFF 9 Unmodified _RVSRSCFFF_ 0 0 0 ENST00000373825.6_1_6:35802780-35803047:-|nuORF ENST00000373825.6_1_6:35802780-35803047:-|nuORF ENST00000373825.6_1_6:35802780-35803047:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.7870483398438 2 574.787118 1147.55968 0.84383 0.00048502 -0.8537 -0.00049069 -0.0098716 -5.6741E-06 574.7872371263791 101.59 0.1104 95.413 95.351 95.461 -6.1757 9 5 2 0 0 0 0.20139 1 68203 68203 10.824 1.4765 1 12945000 55440 12423 37371 38196 64308 64308 -0.00819374960406094 RVTPVEVMPV 10 Unmodified _RVTPVEVMPV_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5455627441406 3 376.214482 1125.62162 0.20808 7.8282E-05 -2.4571 -0.00092438 -2.249 -0.0008461 376.2137603539375 55.135 0.31522 55.066 54.823 55.138 -0.068737 25 15 2 0 0 0 0.71276 1 29860 29860 0.62683 0 1 21011000 55441 16013 37372 38197 64309 64309 0.06382931668031233 RVTRRRQILIA 11 Unmodified _RVTRRRQILIA_ 0 0 0 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.4491577148438 2 691.446769 1380.87898 NaN NaN NaN NaN NaN NaN NaN 96.692 1 96.685 96.185 97.185 -0.007019 0 0 0 0.9435 1 53698 53698 0 0 1 55442 956 37373 38198 64310 64310 0.20378009656292306 RVTVQVDN 8 Unmodified _RVTVQVDN_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;ENST00000486192.1_1_10:108380089-108389119:-|nuORF nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 465.2546997070312 2 465.753798 929.493044 0.79917 0.00037222 3.1351 0.0014602 3.9342 0.0018324 465.755829942367 101.52 0.081345 95.34 95.291 95.373 -6.1757 6 3 2 0 0 0 8.7369 1 68125 68125 15.847 3.6065 1 7405400 55443 16109 37374 38199 64311 64311 0.025477127493331864 RVVCVYDRADG 11 Unmodified _RVVCVYDRADG_ 0 0 0 REV__BCAM|p.E120A|1|0.05|ENSG00000187244|chr19:44812317-44812317|A/C|missense_variant REV__BCAM|p.E120A|1|0.05|ENSG00000187244|chr19:44812317-44812317|A/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2068481445312 3 418.208278 1251.60301 NaN NaN NaN NaN NaN NaN NaN 14.661 1 14.661 14.161 15.161 0 0 0 0 0.94216 1 6987 6987 0.32927 0 1 + 55444 16744 37375 38200 64312 64312 -0.012732299737990616 RVVFIKWI 8 Unmodified _RVVFIKWI_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.2256469726562 3 354.22705 1059.65932 NaN NaN NaN NaN NaN NaN NaN 83.337 1 83.337 82.837 83.837 0 0 0 0 0.97444 1 46220 46220 0.45834 0 1 55445 9669 37376 38201 64313 64313 0.13187810715839987 RVVLHILM 8 Unmodified _RVVLHILM_ 0 0 0 REV__ENSG00000172640|ENST00000310248|OR10AD1 REV__ENSG00000172640|ENST00000310248|OR10AD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8172302246094 2 490.807322 979.600092 0.44959 0.00022066 1.2138 0.00059576 1.6634 0.00081642 490.80760987075803 51.819 0.28297 51.76 51.592 51.875 -0.058918 32 13 4 0 0 0 8.7369 1 27981 27981 0 0 1 4053900 + 55446 22664 37377 38202 64314 64314 0.10947591430033299 RVVVKILKP 9 Unmodified _RVVVKILKP_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 ENSG00000070770|ENST00000262506|CSNK2A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1052.072143554688 1 1051.73501 1050.72774 0.69373 0.00072962 0.1873 0.00019698 0.88103 0.00092661 1051.7385290250934 60.586 0.13747 60.542 60.476 60.613 -0.04351 8 6 2 0 0 0 0.62242 1 33083 33083 0 0 1 6203500 55447 1039 37378 38203 64315 64315 0.20440055295716775 RVVVTIHFL 9 Unmodified _RVVVTIHFL_ 0 0 0 ENST00000296051.6_1_3:148890146-148890290:+|nuORF ENST00000296051.6_1_3:148890146-148890290:+|nuORF ENST00000296051.6_1_3:148890146-148890290:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3373413085938 2 542.337301 1082.66005 0.63528 0.00034454 -0.3515 -0.00019063 0.28378 0.00015391 542.3368790568516 71.725 0.186 71.764 71.664 71.85 0.039024 18 8 3 0 0 0 0.25681 1 39502 39502 19.257 5.7491 1 2689300 55448 11503 37379 38204 64316 64316 0.12202605364905139 RVWDWVIVR 9 Unmodified _RVWDWVIVR_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MSMS AL20221201_MKP_PDAC_01 4 409.9032287597656 3 410.236497 1227.68766 NaN NaN NaN NaN NaN NaN NaN 19.372 1 16.716 16.216 17.216 -2.6564 0 0 0 0.82283 1 10254 10254 4.897 0 1 + 55449 24391 37380 38205 64317 64317 0.08292508625117989 RVWLRWFLWR 10 Unmodified _RVWLRWFLWR_ 0 0 0 ENST00000264649.10_1_17:40610912-40612943:+|nuORF ENST00000264649.10_1_17:40610912-40612943:+|nuORF ENST00000264649.10_1_17:40610912-40612943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 759.9417114257812 2 759.435673 1516.85679 0.10272 7.801E-05 0.13483 0.00010239 0.23755 0.0001804 759.4375897074467 97.743 0.83762 97.501 97.081 97.919 -0.24277 228 37 7 0 0 0 0.72607 4 53178 53178;53298;53437;53544 0 0 1 131730000 55450 11318 37381 38206 64318;64319;64320;64321 64318 0.11903829978473368 RVYRDKVI 8 Unmodified _RVYRDKVI_ 0 0 0 REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF REV__ENST00000467224.5_1_3:25761125-25775431:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.2132263183594 3 350.213581 1047.61891 NaN NaN NaN NaN NaN NaN NaN 19.766 1 19.794 19.294 20.294 0.028357 0 0 0 0.97444 1 9984 9984 3.2813 0 1 + 55451 21048 37382 38207 64322 64322 0.09700844325402613 RVYRFCTF 8 Unmodified _RVYRFCTF_ 0 0 0 ENST00000374561.5_1_1:23884502-23884709:-|nuORF ENST00000374561.5_1_1:23884502-23884709:-|nuORF ENST00000374561.5_1_1:23884502-23884709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2800903320312 2 546.276386 1090.53822 -0.21208 -0.00011585 0.34107 0.00018632 0.12899 7.0466E-05 546.2768945086756 69.458 0.50399 68.979 68.81 69.314 -0.47903 46 21 3 0 0 0 0.80143 1 38139 38139 5.7604 0 1 4098500 55452 12450 37383 38208 64323 64323 -0.003427599891438149 RWAELLPLL 9 Unmodified _RWAELLPLL_ 0 0 0 ENSG00000023191|ENST00000354420|RNH1;ENST00000533592.2_1_11:501898-502162:-|nuORF;ENST00000528713.5_1_11:500482-502162:-|nuORF;ENST00000531223.1_1_11:499763-502162:-|nuORF;ENST00000525522.5_1_11:499827-504867:-|nuORF ENSG00000023191|ENST00000354420|RNH1 ENSG00000023191|ENST00000354420|RNH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8373413085938 2 555.837134 1109.65972 2.5052 0.0013925 -1.1204 -0.00062278 1.3848 0.00076973 555.8364467978622 96.335 0.37106 96.327 96.134 96.505 -0.007019 40 12 4 0 0 0 0.020973 1 53491 53491 62.573 18.714 1 18293000 55453 537 37384 38209 64324 64324 0.10927185645050486 RWAELLPLL 9 Unmodified _RWAELLPLL_ 0 0 0 ENSG00000023191|ENST00000354420|RNH1;ENST00000533592.2_1_11:501898-502162:-|nuORF;ENST00000528713.5_1_11:500482-502162:-|nuORF;ENST00000531223.1_1_11:499763-502162:-|nuORF;ENST00000525522.5_1_11:499827-504867:-|nuORF ENSG00000023191|ENST00000354420|RNH1 ENSG00000023191|ENST00000354420|RNH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8380126953125 2 555.837134 1109.65972 1.6664 0.00092625 -0.17191 -9.5555E-05 1.4945 0.0008307 555.8370961427344 100.94 0.1299 94.766 94.701 94.831 -6.1757 16 7 3 0 0 0 0.03568 1 67614 67614 52.268 12.311 1 101370000 55454 537 37384 38209 64325 64325 0.10927185645050486 RWAGCVGPRL 10 Unmodified _RWAGCVGPRL_ 0 0 0 REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF REV__ENST00000368654.7_1_10:129924452-129924542:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2012634277344 3 372.202799 1113.58657 0.71308 0.00026541 -3.0698 -0.0011426 -2.3568 -0.00087719 372.2009826408722 47.393 0.45749 47.354 47.082 47.54 -0.038643 71 21 4 0 0 0 0.69377 1 25546 25546 1.7423 0.67081 1 28814000 + 55455 26014 37385 38210 64326 64326 0.03431733650768365 RWARWLWRRLF 11 Unmodified _RWARWLWRRLF_ 0 0 0 ENST00000491791.1_1_3:49377935-49378118:-|nuORF ENST00000491791.1_1_3:49377935-49378118:-|nuORF ENST00000491791.1_1_3:49377935-49378118:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 823.472900390625 2 823.470578 1644.9266 NaN NaN NaN NaN NaN NaN NaN 89.623 1 83.448 82.948 83.948 -6.1757 0 0 0 0.9435 1 59168 59168 0 0 1 55456 14286 37386 38211 64327 64327 0.12993708647081803 RWCWCTRWCWW 11 Unmodified _RWCWCTRWCWW_ 0 0 0 REV__ENST00000246115.4_1_19:3178863-3179049:+|nuORF REV__ENST00000246115.4_1_19:3178863-3179049:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.1384887695312 2 836.349568 1670.68458 NaN NaN NaN NaN NaN NaN NaN 88.362 1 88.415 87.915 88.915 0.053352 0 0 0 0.9435 1 49158 49158 0 0 1 + 55457 24862 37387 38212 64328 64328 -0.12393149087210986 RWDEAFRKF 9 Unmodified _RWDEAFRKF_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8841552734375 3 418.884123 1253.63054 0.50377 0.00021102 0.093295 3.908E-05 0.59707 0.0002501 418.88415477539917 43.025 0.2185 43.009 42.864 43.083 -0.015667 24 9 3 0 0 0 0.0073703 1 23019 23019 102.55 84.977 1 23566000 55458 1880 37388 38213 64329 64329 0.013870413487211408 RWDEAFRKF 9 Unmodified _RWDEAFRKF_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20221201_MKP_PDAC_01 4 418.8843078613281 3 418.884123 1253.63054 NaN NaN NaN NaN NaN NaN NaN 77.346 1 71.171 70.671 71.671 -6.1757 0 0 0 0.011221 1 50589 50589 98.73 80.009 1 55459 1880 37388 38213 64330 64330 0.013870413487211408 RWDEAFRKF 9 Unmodified _RWDEAFRKF_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20221201_MKP_PDAC_01 4 418.8841552734375 3 418.884123 1253.63054 NaN NaN NaN NaN NaN NaN NaN 77.554 1 71.379 70.879 71.879 -6.1757 0 0 0 0.006767 1 50732 50732 115.06 98.011 1 55460 1880 37388 38213 64331 64331 0.013870413487211408 RWDPCPLL 8 Unmodified _RWDPCPLL_ 0 0 0 ENST00000483767.5_1_1:880076-882054:-|nuORF ENST00000483767.5_1_1:880076-882054:-|nuORF ENST00000483767.5_1_1:880076-882054:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2575988769531 2 500.257662 998.500772 NaN NaN NaN NaN NaN NaN NaN 85.282 1 85.282 84.782 85.782 0 0 0 0 0.97444 1 47266 47266 0.79363 0 1 55461 14136 37389 38214 64332 64332 0.0014614874523886101 RWDRGTNHLLF 11 Unmodified _RWDRGTNHLLF_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000529186.1_1_11:44129577-44137613:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.5838623046875 3 472.249465 1413.72657 1.0705 0.00050553 -0.96583 -0.00045611 0.10464 4.9416E-05 472.5831838728468 46.96 0.22189 46.926 46.794 47.016 -0.033417 23 10 3 0 0 0 0.53099 1 25269 25269 14.838 11.251 1 8589000 55462 6106 37390 38215 64333 64333 0.03625189188846889 RWEHLIYQF 9 Unmodified _RWEHLIYQF_ 0 0 0 ENSG00000139344|ENST00000266736|AMDHD1 ENSG00000139344|ENST00000266736|AMDHD1 ENSG00000139344|ENST00000266736|AMDHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3324584960938 2 646.332747 1290.65094 NaN NaN NaN NaN NaN NaN NaN 92.586 1 92.586 92.086 93.086 0 0 0 0 0.85737 1 51196 51196 0.6015 0 1 55463 5148 37391 38216 64334 64334 0.01724212008525683 RWFDKSFTF 9 Unmodified _RWFDKSFTF_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.8738708496094 3 411.873224 1232.59784 0.70989 0.00029239 0.94135 0.00038772 1.6512 0.0006801 411.87354654624943 63.803 0.30972 63.793 63.61 63.919 -0.010532 51 14 5 0 0 0 0.039985 2 34867 34867;34977 53.404 38.999 1 33089000 55464 2701 37392 38217 64335;64336 64335 -0.009151657741085728 RWFDKSFTF 9 Unmodified _RWFDKSFTF_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3070068359375 2 617.306198 1232.59784 1.1464 0.0007077 0.97393 0.00060121 2.1204 0.0013089 617.3067007807635 63.805 0.29004 63.795 63.629 63.919 -0.010532 55 13 5 0 0 0 0.011671 1 34879 34879 75.761 35.811 1 29423000 55465 2701 37392 38217 64337 64337 -0.009151657741085728 RWFDKSFTF 9 Unmodified _RWFDKSFTF_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.8741149902344 3 411.873224 1232.59784 1.1002 0.00045315 2.209 0.00090983 3.3092 0.001363 411.8733103003436 93.767 0.3369 87.591 87.432 87.769 -6.1757 57 19 4 0 0 0 0.36964 1 62018 62018 18.373 11.75 1 73155000 55466 2701 37392 38217 64338 64338 -0.009151657741085728 RWFDKSFTF 9 Unmodified _RWFDKSFTF_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3064575195312 2 617.306198 1232.59784 0.77166 0.00047635 -0.92327 -0.00056994 -0.15161 -9.3589E-05 617.3058988151605 93.765 0.69974 87.589 87.451 88.151 -6.1757 116 40 6 0 0 0 0.0086209 2 62164 62030;62164 89.401 56.622 1 85998000 55467 2701 37392 38217 64339;64340 64340 -0.009151657741085728 RWFDKTLQF 9 Unmodified _RWFDKTLQF_ 0 0 0 nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-2|CRAT nc|ENSG00000095321|P43155-2|CRAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2205505371094 3 414.220624 1239.64004 0.1739 7.2033E-05 0.47258 0.00019575 0.64648 0.00026779 414.22090350494767 60.591 0.25711 60.547 60.415 60.672 -0.043507 22 12 3 0 0 0 0.082934 1 33043 33043 37.075 28.919 1 12234000 55468 1649 37393 38218 64341 64341 0.029808096342549106 RWFDKTLQF 9 Unmodified _RWFDKTLQF_ 0 0 0 nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-2|CRAT nc|ENSG00000095321|P43155-2|CRAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.825927734375 2 620.827298 1239.64004 0.55562 0.00034495 -0.74434 -0.00046211 -0.18872 -0.00011716 620.8269412142248 60.579 0.21582 60.535 60.457 60.672 -0.04351 17 10 2 0 0 0 0.01861 1 33061 33061 70.332 42.703 1 10117000 55469 1649 37393 38218 64342 64342 0.029808096342549106 RWFDKTLQF 9 Unmodified _RWFDKTLQF_ 0 0 0 nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-2|CRAT nc|ENSG00000095321|P43155-2|CRAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8272094726562 2 620.827298 1239.64004 0.95027 0.00058996 -0.02777 -1.7241E-05 0.9225 0.00057272 620.827119204854 91.852 0.3471 85.676 85.49 85.837 -6.1757 44 19 3 0 0 0 0.0081437 2 60794 60666;60794 93.166 60.86 1 17013000 55470 1649 37393 38218 64343;64344 64344 0.029808096342549106 RWFDKTLQF 9 Unmodified _RWFDKTLQF_ 0 0 0 nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT nc|ENSG00000095321|P43155-2|CRAT nc|ENSG00000095321|P43155-2|CRAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2216796875 3 414.220624 1239.64004 1.4022 0.00058081 0.083549 3.4608E-05 1.4857 0.00061542 414.22062622457463 91.846 0.3442 85.671 85.509 85.853 -6.1757 46 19 3 0 0 0 0.082934 2 60792 60673;60792 37.075 25.557 1 19363000 55471 1649 37393 38218 64345;64346 64346 0.029808096342549106 RWFECFDSV 9 Unmodified _RWFECFDSV_ 0 0 0 ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 MSMS AL20221201_MKP_PDAC_01 4 396.8439025878906 3 396.842936 1187.50698 NaN NaN NaN NaN NaN NaN NaN 6.3635 1 3.8815 3.3815 4.3815 -2.482 0 0 0 0.85798 1 3219 3219 0.23584 0.095952 1 55472 3493 37394 38219 64347 64347 -0.07927377813894054 RWFEQWVMRWA 11 Unmodified _RWFEQWVMRWA_ 0 0 0 ENST00000372806.7_1_20:43629826-43629877:+|nuORF ENST00000372806.7_1_20:43629826-43629877:+|nuORF ENST00000372806.7_1_20:43629826-43629877:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 797.8896484375 2 797.890438 1593.76632 NaN NaN NaN NaN NaN NaN NaN 84.811 1 78.635 78.135 79.135 -6.1757 0 0 0 0.94002 1 55817 55817 2.4985 0 1 55473 12393 37395 38220 64348 64348 -0.0068100713210696995 RWFLRKKVL 9 Unmodified _RWFLRKKVL_ 0 0 0 ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC MSMS AL20221201_MKP_PDAC_01 4 623.3994750976562 2 623.400767 1244.78698 NaN NaN NaN NaN NaN NaN NaN 105.6 1 99.425 98.925 99.925 -6.1757 0 0 0 0.85737 1 70747 70747 0.6015 0 1 55474 3061 37396 38221 64349 64349 0.17437951309852906 RWFPFHHHQL 10 Unmodified _RWFPFHHHQL_ 0 0 0 REV__ENST00000343200.9_2_5:82837985-82838039:+|nuORF REV__ENST00000343200.9_2_5:82837985-82838039:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 702.8572998046875 2 702.857255 1403.69996 NaN NaN NaN NaN NaN NaN NaN 17.08 1 17.085 16.585 17.585 0.0050564 0 0 0 1.0061 1 8599 8599 0 0 1 + 55475 25733 37397 38222 64350 64350 0.014255450881819343 RWFQHRRNRRR 11 Unmodified _RWFQHRRNRRR_ 0 0 0 nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000464624.6_1_20:57428320-57466719:+|nuORF;nc|ENSG00000087460|Q5JWF2-3|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.47021484375 2 834.469964 1666.92537 NaN NaN NaN NaN NaN NaN NaN 52.86 1 52.796 52.296 53.296 -0.063423 0 0 0 0.94307 1 28648 28648 0.30703 0.30703 1 55476 16063 37398 38223 64351 64351 0.11858887330890866 RWFQPAIPSW 10 Unmodified _RWFQPAIPSW_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3364868164062 2 644.33529 1286.65603 0.46413 0.00029906 -0.28466 -0.00018342 0.17947 0.00011564 644.3350901866398 79.168 0.40688 79.223 79.038 79.445 0.05497 55 15 5 0 0 0 0.0034079 2 43670 43670;43781 103.35 77.085 1 125380000 55477 1623 37399 38224 64352;64353 64352 0.024165158711866752 RWFQPAIPSW 10 Unmodified _RWFQPAIPSW_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3348999023438 2 644.33529 1286.65603 1.1376 0.00073302 -0.77734 -0.00050087 0.36029 0.00023215 644.3347399289336 97.784 0.59569 91.608 91.221 91.817 -6.1757 104 36 5 0 0 0 0.011118 2 64747 64747;64871 85.642 59.373 1 1653699999.9999998 55478 1623 37399 38224 64354;64355 64354 0.024165158711866752 RWFQPAIPSWL 11 Unmodified _RWFQPAIPSWL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.8812866210938 2 700.877322 1399.74009 2.0452 0.0014334 1.3253 0.00092887 3.3705 0.0023623 700.8777727654711 93.995 0.34789 94.009 93.811 94.158 0.014252 28 13 3 0 0 0 0.13715 1 52229 52229 38.176 30.02 1 2866200 55479 1623 37400 38225 64356 64356 0.05621046968076371 RWFQPAIPSWL 11 Unmodified _RWFQPAIPSWL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.8779907226562 2 700.877322 1399.74009 0.79406 0.00055654 -0.012495 -8.7577E-06 0.78157 0.00054778 701.3788753045918 100.28 0.11221 94.103 94.044 94.157 -6.1757 10 6 2 0 0 0 0.01584 1 67036 67036 61.602 42.24 1 25364000 55480 1623 37400 38225 64357 64357 0.05621046968076371 RWFRSSTF 8 Unmodified _RWFRSSTF_ 0 0 0 REV__ENST00000508941.5_1_5:35856265-35860978:+|nuORF REV__ENST00000508941.5_1_5:35856265-35860978:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7761840820312 2 543.777608 1085.54066 0.16195 8.8062E-05 -0.18607 -0.00010118 -0.024123 -1.3117E-05 543.7775092955305 95.124 0.29756 94.756 94.582 94.88 -0.36814 27 15 3 0 0 0 0.80676 1 51935 51935 2.5775 0.51773 1 526990 + 55481 28124 37401 38226 64358 64358 0.001314117401761905 RWFSRVRPGS 10 Unmodified _RWFSRVRPGS_ 0 0 0 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5633544921875 3 416.563384 1246.66832 -0.55307 -0.00023039 0.99054 0.00041262 0.43746 0.00018223 416.89815697779807 18.482 0.10198 18.505 18.454 18.556 0.023106 29 20 2 0 0 0 0.72044 1 9276 9276 0.62683 0.17231 1 356690 + 55482 29738 37402 38227 64359 64359 0.05485552334221211 RWFSRVRPGS 10 Unmodified _RWFSRVRPGS_ 0 0 0 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 416.563384 1246.66832 -0.58841 -0.00024511 -0.33334 -0.00013886 -0.92175 -0.00038397 416.5632044206651 18.619 0.16278 18.619 18.529 18.692 0 0.056727 -0.00077873 NaN 0.62683 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1217600 + 55483 29738 37402 38227 0.05485552334221211 RWFSRVRPGS 10 Unmodified _RWFSRVRPGS_ 0 0 0 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 REV__nc|ENSG00000162522|Q9P206-3|NHSL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 416.563384 1246.66832 -0.55307 -0.00023039 0.99054 0.00041262 0.43746 0.00018223 416.89815697779807 18.482 0.10198 18.505 18.454 18.556 0.023106 -0.056727 0.00087571 NaN 0.62683 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 356690 + 55484 29738 37402 38227 0.05485552334221211 RWFTHASPTL 10 Unmodified _RWFTHASPTL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8807983398438 3 405.88049 1214.61964 0.3533 0.0001434 0.26469 0.00010743 0.618 0.00025083 405.8804702038435 43.022 0.23921 43.006 42.864 43.104 -0.015667 27 10 3 0 0 0 0.10406 1 23030 23030 33.821 19.603 1 15685000 55485 7600 37403 38228 64360 64360 0.020916389744797925 RWFTHASPTL 10 Unmodified _RWFTHASPTL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3170776367188 2 608.317097 1214.61964 0.66931 0.00040715 -1.4649 -0.00089114 -0.79562 -0.00048399 608.3160316461566 43.033 0.19473 43.017 42.888 43.083 -0.015667 15 8 2 0 0 0 0.00089066 1 23046 23046 114.2 52.6 1 5621200 55486 7600 37403 38228 64361 64361 0.020916389744797925 RWFTHASPTLF 11 Unmodified _RWFTHASPTLF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2384033203125 3 454.903295 1361.68806 0.65382 0.00029742 0.038691 1.76E-05 0.69251 0.00031502 454.9031059919474 59.273 0.22051 59.22 59.073 59.293 -0.053062 25 10 3 0 0 0 0.11523 1 32272 32272 40.714 26.496 1 8832700 55487 7600 37404 38229 64362 64362 0.02167883554329819 RWFTHASPTLF 11 Unmodified _RWFTHASPTLF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2390441894531 3 454.903295 1361.68806 1.314 0.00059776 1.1925 0.00054246 2.5065 0.0011402 454.90346056500374 94.195 0.25296 88.019 87.898 88.151 -6.1757 46 14 4 0 0 0 0.16638 1 62339 62339 34.79 24.475 1 35571000 55488 7600 37404 38229 64363 64363 0.02167883554329819 RWFTHASPTLF 11 Unmodified _RWFTHASPTLF_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.8536376953125 2 681.851304 1361.68806 1.5815 0.0010783 1.3791 0.00094032 2.9605 0.0020187 681.8528345344695 94.211 0.20274 88.035 87.916 88.118 -6.1757 25 11 3 0 0 0 0.0045481 1 62414 62414 100.71 67.923 1 22964000 55489 7600 37404 38229 64364 64364 0.02167883554329819 RWFWQIQI 8 Unmodified _RWFWQIQI_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.818115234375 2 588.819276 1175.624 0.030013 1.7672E-05 -0.90201 -0.00053112 -0.872 -0.00051345 588.8186728487383 37.682 0.26727 37.699 37.572 37.839 0.01704 22 12 2 0 0 0 0.76266 1 20043 20043 2.5775 0 1 4572100 + 55490 17772 37405 38230 64365 64365 0.043211481880234714 RWGIVSVGL 9 Unmodified _RWGIVSVGL_ 0 0 0 ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH ENSG00000104808|ENST00000221403|DHDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7939453125 2 493.792727 985.5709 0.92706 0.00045777 0.032836 1.6214E-05 0.95989 0.00047399 493.792728603464 70.387 0.28002 70.422 70.312 70.592 0.035515 26 12 3 0 0 0 0.20428 1 38778 38778 22.736 3.2973 1 1710900 55491 2236 37406 38231 64366 64366 0.07753770405372507 RWGLWWRL 8 Unmodified _RWGLWWRL_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5537719726562 3 391.554049 1171.64032 1.3782 0.00053962 -0.81302 -0.00031834 0.56515 0.00022129 391.55348391330966 87.035 0.65776 80.86 80.546 81.203 -6.1757 106 35 4 0 0 0 0.79982 1 57531 57531 6.7232 0.099709 1 61821000 + 55492 21592 37407 38232 64367 64367 0.06136274144773779 RWGNPRAL 8 Unmodified _RWGNPRAL_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20221201_MKP_PDAC_01 4 485.271728515625 2 485.272493 968.530432 NaN NaN NaN NaN NaN NaN NaN 37.198 1 32.915 32.415 33.415 -4.2835 0 0 0 0.054289 1 21811 21811 101.72 27.299 1 55493 16067;16068 37408 38233 64368 64368 0.04490848805608039 RWGPVAHPF 9 Unmodified _RWGPVAHPF_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2842407226562 2 533.782693 1065.55083 0.62809 0.00033526 0.093698 5.0014E-05 0.72179 0.00038528 533.782702586935 42.826 0.25756 42.817 42.686 42.943 -0.0088196 38 11 4 0 0 0 0.095405 2 22908 22908;23006 34.102 10.954 1 48507000 55494 12057 37409 38234 64369;64370 64369 0.02068019465400539 RWGPVAHPF 9 Unmodified _RWGPVAHPF_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.1909790039062 3 356.190888 1065.55083 0.52093 0.00018555 0.40099 0.00014283 0.92192 0.00032838 356.1909887546306 42.84 0.27917 42.831 42.686 42.965 -0.0088196 38 12 4 0 0 0 0.14602 1 22911 22911 20.415 8.9198 1 28605000 55495 12057 37409 38234 64371 64371 0.02068019465400539 RWGPVAHPF 9 Unmodified _RWGPVAHPF_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7855834960938 2 533.782693 1065.55083 0.97443 0.00052013 0.39462 0.00021064 1.3691 0.00073078 533.783293384513 47.293 0.69524 42.213 41.955 42.65 -5.0805 85 45 2 0 0 0 0.078417 2 29152 29152;29422 38.151 15.003 1 101020000 55496 12057 37409 38234 64372;64373 64372 0.02068019465400539 RWGPVAHPF 9 Unmodified _RWGPVAHPF_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1911010742188 3 356.190888 1065.55083 1.6792 0.0005981 0.28259 0.00010066 1.9618 0.00069876 356.19104239660794 47.288 0.60701 42.208 41.933 42.54 -5.0805 100 40 3 0 0 0 0.06187 4 29176 29167;29176;29303;29431 31.268 15.119 1 111080000 55497 12057 37409 38234 64374;64375;64376;64377 64375 0.02068019465400539 RWGPVAHPF 9 Unmodified _RWGPVAHPF_ 0 0 0 ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF ENST00000353704.2_2_9:35732632-35732818:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 356.190888 1065.55083 2.4692 0.00087951 0.9039 0.00032196 3.3731 0.0012015 356.19096414400457 47.682 0.081894 42.448 42.386 42.468 -5.2339 -0.19151 0.00052493 NaN 20.415 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4206900 55498 12057 37409 38234 0.02068019465400539 RWGTDELAF 9 Unmodified _RWGTDELAF_ 0 0 0 ENSG00000104537|ENST00000419625|ANXA13;nc|ENSG00000104537|P27216-2|ANXA13 ENSG00000104537|ENST00000419625|ANXA13 ENSG00000104537|ENST00000419625|ANXA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7674560546875 2 547.766906 1093.51926 0.3924 0.00021494 0.0040736 2.2314E-06 0.39647 0.00021718 547.7668382794195 59.166 0.23822 59.166 59.024 59.262 0 21 9 3 0 0 0 0.30202 1 32934 32934 17.113 7.7298 1 2347800 55499 2215 37410 38235 64378 64378 -0.023760180791896346 RWHGFIGVA 9 Unmodified _RWHGFIGVA_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7830810546875 2 521.782693 1041.55083 NaN NaN NaN NaN NaN NaN NaN 1.4362 1 1.4156 0.9156 1.9156 -0.020623 0 0 0 0.8622 1 745 745 0 0 1 + 55500 22295 37411 38236 64379 64379 0.031720194654326406 RWICHRWL 8 Unmodified _RWICHRWL_ 0 0 0 REV__ENST00000543926.6_1_18:74647944-74680292:+|nuORF REV__ENST00000543926.6_1_18:74647944-74680292:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 585.3746948242188 2 585.311095 1168.60764 0.13506 7.9054E-05 2.9877 0.0017487 3.1228 0.0018278 585.31293529109 23.719 0.21076 20.892 20.772 20.983 -2.8273 18 12 2 0 0 0 8.7369 1 12783 12783 5.7604 0 1 3224200 + 55501 28637 37412 38237 64380 64380 0.030077437502995963 RWIQTYVS 8 Unmodified _RWIQTYVS_ 0 0 0 REV__nc|ENSG00000141564|Q8N122-3|RPTOR REV__nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.5221862792969 3 351.522303 1051.54508 0.12026 4.2273E-05 0.17216 6.0519E-05 0.29242 0.00010279 351.52233470250974 31.315 0.28588 31.315 31.132 31.418 0 21 13 2 0 0 0 0.80311 1 16311 16311 3.2813 0 1 1157100 + 55502 20545 37413 38238 64381 64381 0.021368761630810695 RWKCRRLRIR 10 Unmodified _RWKCRRLRIR_ 0 0 0 nc|ENSG00000147255|Q8N6C5-2|IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 nc|ENSG00000147255|Q8N6C5-2|IGSF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 721.9412841796875 2 721.941131 1441.86771 NaN NaN NaN NaN NaN NaN NaN 95.711 1 95.343 94.843 95.843 -0.36814 0 0 0 1.0061 1 52276 52276 0 0 1 55503 5837 37414 38239 64382 64382 0.16444909081110382 RWKEKIDKTRK 11 Unmodified _RWKEKIDKTRK_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.6311340332031 3 496.631687 1486.87323 0.40348 0.00020038 -0.55225 -0.00027426 -0.14876 -7.388E-05 496.63140198872077 96.232 0.29059 95.928 95.821 96.111 -0.30472 22 18 2 0 0 0 0.7453 1 52555 52555 0 0 1 475290 55504 6407 37415 38240 64383 64383 0.1492686635388054 RWKELEMHSL 10 Unmodified _RWKELEMHSL_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;ENST00000520495.5_1_18:8785939-8809580:+|nuORF nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.34375 2 664.842622 1327.67069 -0.024431 -1.6243E-05 0.80326 0.00053404 0.77883 0.0005178 664.8427775390167 88.287 0.53355 88.287 88.073 88.606 0 54 26 3 0 0 0 0.24008 1 49016 49016 0.40072 0 1 636470 55505 7773 37416 38241 64384 64384 0.019962199570272787 RWKHYERIVI 10 Unmodified _RWKHYERIVI_ 0 0 0 REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP REV__nc|ENSG00000175727|Q9HAP2-3|MLXIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.9033813476562 2 700.401496 1398.78844 0.40681 0.00028493 0.32492 0.00022757 0.73172 0.0005125 700.9029441087125 74.423 0.27127 74.469 74.302 74.573 0.045959 26 11 3 0 0 0 0.54684 1 41034 41034 13.906 1.6654 1 2598300 + 55506 22890 37417 38242 64385 64385 0.10499540607975177 RWKLTYPT 8 Unmodified _RWKLTYPT_ 0 0 0 ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.796875 2 532.798009 1063.58147 0.42835 0.00022823 -1.7192 -0.00091597 -1.2908 -0.00068774 532.7971767004877 86.499 0.30883 85.996 85.833 86.141 -0.50318 20 12 2 0 0 0 0.67481 1 47327 47327 19.439 2.4967 1 716830 55507 11479 37418 38243 64386 64386 0.052217530597772566 RWKLTYPT 8 Unmodified _RWKLTYPT_ 0 0 0 ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF ENST00000293777.5_1_17:4636647-4636857:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 532.798009 1063.58147 0.32034 0.00017068 -0.63528 -0.00033848 -0.31494 -0.0001678 532.7973759463715 85.992 0.09156 85.992 85.952 86.043 0 -0.0018233 0.00067405 NaN 19.439 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 197990 55508 11479 37418 38243 0.052217530597772566 RWKPASQPTI 10 Unmodified _RWKPASQPTI_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2244567871094 3 395.224257 1182.65094 -0.1663 -6.5726E-05 0.77271 0.0003054 0.60641 0.00023967 395.2245617257144 29.947 0.34775 29.977 29.811 30.159 0.030106 43 13 4 0 0 0 0.046375 1 15630 15630 44.392 27.343 1 12231000 55509 10306 37419 38244 64387 64387 0.06692212008556453 RWKPASQPTI 10 Unmodified _RWKPASQPTI_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3333129882812 2 592.332747 1182.65094 -0.16328 -9.6715E-05 1.0514 0.00062279 0.88814 0.00052607 592.333398852931 29.977 0.29755 30.007 29.84 30.137 0.030106 27 11 3 0 0 0 0.060508 1 15637 15637 55.503 31.482 1 5253000 55510 10306 37419 38244 64388 64388 0.06692212008556453 RWKPASQPTI 10 Unmodified _RWKPASQPTI_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2246398925781 3 395.224257 1182.65094 1.5466 0.00061123 0.93499 0.00036953 2.4815 0.00098076 395.22432146601176 34.018 0.49071 30.033 29.747 30.238 -3.9853 84 26 4 0 0 0 0.051223 3 19597 19462;19470;19597 49.742 32.693 1 74443000 55511 10306 37419 38244 64389;64390;64391 64391 0.06692212008556453 RWKPASQPTI 10 Unmodified _RWKPASQPTI_ 0 0 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8369750976562 2 592.332747 1182.65094 1.1621 0.00068836 2.4336 0.0014415 3.5957 0.0021298 592.3331012476245 34.017 0.43093 30.031 29.785 30.216 -3.9853 70 23 4 0 0 0 0.0015998 2 19477 19477;19598 110.55 66.78 1 40890000 55512 10306 37419 38244 64392;64393 64392 0.06692212008556453 RWKPTSPLL 9 Unmodified _RWKPTSPLL_ 0 0 0 ENST00000340023.6_1_19:52264477-52271939:+|nuORF ENST00000340023.6_1_19:52264477-52271939:+|nuORF ENST00000340023.6_1_19:52264477-52271939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3275756835938 2 549.326934 1096.63931 0.93749 0.00051499 0.38976 0.00021411 1.3273 0.0007291 549.3269815527682 70.673 0.35207 70.708 70.503 70.855 0.035515 24 15 2 0 0 0 0.19361 1 38881 38881 19.257 0 1 2618100 55513 11958 37420 38245 64394 64394 0.0948601498523658 RWKQMNPQPAL 11 Unmodified _RWKQMNPQPAL_ 0 0 0 ENST00000476402.1_1_3:183685269-183689578:-|nuORF ENST00000476402.1_1_3:183685269-183689578:-|nuORF ENST00000476402.1_1_3:183685269-183689578:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.9120788574219 3 456.911685 1367.71322 NaN NaN NaN NaN NaN NaN NaN 23.747 1 20.92 20.42 21.42 -2.8273 0 0 0 0.92234 1 12872 12872 2.8433 0 1 55514 13982 37421 38246 64395 64395 0.04407615085256111 RWKRKRQWVYQ 11 Unmodified _RWKRKRQWVYQ_ 0 0 0 REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 817.4646606445312 2 817.46295 1632.91135 NaN NaN NaN NaN NaN NaN NaN 54.242 1 54.242 53.742 54.742 0 0 0 0 0.9435 1 30103 30103 0 0 1 + 55515 28854 37422 38247 64396 64396 0.12020797059267352 RWKRKRQWVYQ 11 Unmodified _RWKRKRQWVYQ_ 0 0 0 REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 817.4644165039062 2 817.46295 1632.91135 NaN NaN NaN NaN NaN NaN NaN 94.272 1 94.286 93.786 94.786 0.014244 0 0 0 0.9435 1 52393 52393 0 0 1 + 55516 28854 37422 38247 64397 64397 0.12020797059267352 RWKRYRRWMKN 11 Unmodified _RWKRYRRWMKN_ 0 0 0 nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.6463623046875 3 560.644044 1678.9103 NaN NaN NaN NaN NaN NaN NaN 20.316 1 20.326 19.826 20.826 0.010553 0 0 0 0.9435 1 10358 10358 0 0 1 55517 820 37423 38248 64398 64398 0.09800259418693713 RWKRYRRWMKN 11 Unmodified _RWKRYRRWMKN_ 0 0 0 nc|ENSG00000059769|Q9H1X3-2|DNAJC25;ENST00000463589.5_1_9:114405367-114415499:+|nuORF;ENSG00000059769|ENST00000313525|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 nc|ENSG00000059769|Q9H1X3-2|DNAJC25 MSMS AL20221201_MKP_PDAC_01 4 840.4645385742188 2 840.462427 1678.9103 NaN NaN NaN NaN NaN NaN NaN 54.591 1 48.725 48.225 49.225 -5.8653 0 0 0 0.9435 1 34647 34647 0 0 1 55518 820 37423 38248 64399 64399 0.09800259418693713 RWLAQPYYL 9 Unmodified _RWLAQPYYL_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000528042.1_1_11:57480099-57505208:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3232421875 2 605.324391 1208.63423 0.77104 0.00046673 -1.159 -0.00070157 -0.38796 -0.00023484 605.323751846796 66.752 0.30565 66.761 66.603 66.908 0.0095596 26 14 2 0 0 0 0.06187 1 36615 36615 42.095 28.189 1 6417200 55519 10445 37424 38249 64400 64400 0.03825711122613029 RWLAQPYYL 9 Unmodified _RWLAQPYYL_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000528042.1_1_11:57480099-57505208:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3260498046875 2 605.324391 1208.63423 0.50626 0.00030645 0.016707 1.0113E-05 0.52297 0.00031657 605.3245138189795 90.095 0.50407 83.919 83.651 84.156 -6.1757 48 28 2 0 0 0 0.026094 2 59478 59478;59616 57.471 33.451 1 12480000 55520 10445 37424 38249 64401;64402 64401 0.03825711122613029 RWLDRQKMIWW 11 Unmodified _RWLDRQKMIWW_ 0 0 0 ENST00000481150.1_1_6:90717961-90718406:-|nuORF ENST00000481150.1_1_6:90717961-90718406:-|nuORF ENST00000481150.1_1_6:90717961-90718406:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.4279174804688 2 809.427187 1616.83982 NaN NaN NaN NaN NaN NaN NaN 49.39 1 49.39 48.89 49.89 0 0 0 0 0.9435 1 27176 27176 0 0 1 55521 14074 37425 38250 64403 64403 0.05607541310382658 RWLEEAEHF 9 Unmodified _RWLEEAEHF_ 0 0 0 ENST00000409825.5_1_2:47184044-47301059:+|nuORF;ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF ENST00000409825.5_1_2:47184044-47301059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7897338867188 2 608.790912 1215.56727 -0.082586 -5.0277E-05 -0.17641 -0.0001074 -0.25899 -0.00015767 608.7905653736547 45.493 0.15676 45.493 45.429 45.586 0 18 8 3 0 0 0 0.0081437 1 24798 24798 114.2 92.455 1 12086000 55522 985 37426 38251 64404 64404 -0.03188944159182938 RWLEPSVPF 9 Unmodified _RWLEPSVPF_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8075561523438 2 565.803291 1129.59203 0.86912 0.00049175 0.95714 0.00054156 1.8263 0.0010333 565.8039892978185 92.65 0.58156 86.474 86.115 86.697 -6.1757 92 35 3 0 0 0 0.16226 2 61056 61056;61430 26.884 3.5669 1 118730000 + 55523 29808 37427 38252 64405;64406 64405 0.032417357142321634 RWLGRWRRKRR 11 Unmodified _RWLGRWRRKRR_ 0 0 0 ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000283093|ENST00000634648|CENPVL2 ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000223591|ENST00000602548|CENPVL1 MSMS AL20221201_MKP_PDAC_01 4 813.4953002929688 2 813.49545 1624.97635 NaN NaN NaN NaN NaN NaN NaN 104.92 1 98.745 98.245 99.245 -6.1757 0 0 0 0.9435 1 70232 70232 0 0 1 55524 10572 37428 38253 64407 64407 0.18885836375739018 RWLHMHRLVLI 11 Unmodified _RWLHMHRLVLI_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 737.4351196289062 2 737.434815 1472.85508 NaN NaN NaN NaN NaN NaN NaN 91.913 1 91.432 90.932 91.932 -0.48092 0 0 0 0.9435 1 50243 50243 0 0 1 55525 10061 37429 38254 64408 64408 0.13756452898246607 RWLLQKYLKIR 11 Unmodified _RWLLQKYLKIR_ 0 0 0 ENST00000286298.4_1_5:149361293-149361359:+|nuORF ENST00000286298.4_1_5:149361293-149361359:+|nuORF ENST00000286298.4_1_5:149361293-149361359:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.6592407226562 3 506.320672 1515.94019 1.5196 0.00076942 3.4049 0.001724 4.9245 0.0024934 506.65793868169953 104.53 0.060287 98.355 98.338 98.398 -6.1757 6 3 2 0 0 0 0.74429 1 70018 70018 0.094841 0.094841 1 5403400 55526 11444 37430 38255 64409 64409 0.2028552163567383 RWLPQKNAAQF 11 Unmodified _RWLPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.5825805664062 3 453.582444 1357.7255 0.33861 0.00015359 0.10049 4.558E-05 0.4391 0.00019917 453.58246091094486 37.935 0.3574 37.952 37.793 38.151 0.01704 63 16 6 0 0 0 0.019459 2 20116 20116;20220 46.475 42.629 1 44713000 55527 10558 37431 38256 64410;64411 64410 0.06094974819916388 RWLPQKNAAQF 11 Unmodified _RWLPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.8710327148438 2 679.870028 1357.7255 0.20279 0.00013787 0.41487 0.00028206 0.61766 0.00041993 679.8702437427328 37.935 0.31696 37.952 37.793 38.11 0.01704 47 14 4 0 0 0 5.9796E-10 2 20118 20118;20222 118.07 104.16 1 24598000 55528 10558 37431 38256 64412;64413 64412 0.06094974819916388 RWLPQKNAAQF 11 Unmodified _RWLPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.582275390625 3 453.582444 1357.7255 0.84525 0.00038339 0.16135 7.3185E-05 1.0066 0.00045657 453.5824937279929 43.033 0.40696 38.268 38.026 38.433 -4.7648 93 26 4 0 0 0 0.21511 2 25967 25967;26102 19.987 17.734 1 212300000 55529 10558 37431 38256 64414;64415 64414 0.06094974819916388 RWLPQKNAAQF 11 Unmodified _RWLPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.8709106445312 2 679.870028 1357.7255 0.95768 0.0006511 -0.16099 -0.00010945 0.79669 0.00054165 679.8699599655035 43.042 0.36024 38.277 38.045 38.405 -4.7648 71 23 4 0 0 0 2.0815E-43 2 26137 25997;26137 185.05 162.31 1 75156000 55530 10558 37431 38256 64416;64417 64417 0.06094974819916388 RWLPQKNAAQF 11 Unmodified _RWLPQKNAAQF_ 0 0 0 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000520438.1_1_8:26212061-26216435:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MSMS AL20221201_MKP_PDAC_01 4 453.5841979980469 3 453.582444 1357.7255 NaN NaN NaN NaN NaN NaN NaN 54.598 1 48.733 48.233 49.233 -5.8653 0 0 0 0.63856 1 34655 34655 11.631 6.9155 1 55531 10558 37431 38256 64418 64418 0.06094974819916388 RWLPQQNAAHF 11 Unmodified _RWLPQQNAAHF_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.9053039550781 3 456.570427 1366.68945 0.20465 9.3439E-05 -0.31311 -0.00014296 -0.10846 -4.9519E-05 456.57011315233876 41.372 0.22601 41.37 41.241 41.467 -0.0017929 17 10 2 0 0 0 0.14064 1 22093 22093 37.771 29.485 1 8854500 55532 8520 37432 38257 64419 64419 0.020775176430788633 RWLPQQNAAHF 11 Unmodified _RWLPQQNAAHF_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D ENSG00000175470|ENST00000455566|PPP2R2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.5703735351562 3 456.570427 1366.68945 0.50684 0.00023141 -0.026585 -1.2138E-05 0.48026 0.00021927 456.5703972423981 46.494 0.11257 41.414 41.317 41.43 -5.0805 11 9 2 0 0 0 0.10976 1 28694 28694 41.347 33.402 1 28752000 55533 8520 37432 38257 64420 64420 0.020775176430788633 RWLQYKFFC 9 Unmodified _RWLQYKFFC_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8877258300781 3 430.886588 1289.63793 NaN NaN NaN NaN NaN NaN NaN 53.725 1 53.725 53.225 54.225 0 0 0 0 0.85737 1 29794 29794 0.26902 0.12913 1 55534 3276 37433 38258 64421 64421 0.00470057624806941 RWLRPEVHT 9 Unmodified _RWLRPEVHT_ 0 0 0 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2;nc|ENSG00000176371|Q7Z7L9-3|ZSCAN2;ENSG00000176371|ENST00000546148|ZSCAN2 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2 nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3322143554688 2 597.330539 1192.64652 -0.14185 -8.473E-05 0.40929 0.00024448 0.26744 0.00015975 597.3308758846867 37.937 0.27433 37.954 37.816 38.09 0.01704 27 12 3 0 0 0 0.12424 1 20154 20154 30.637 11.38 1 4059200 55535 8586 37434 38259 64422 64422 0.05790747585638201 RWLWWQPWWWK 11 Unmodified _RWLWWQPWWWK_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.4432373046875 2 879.446237 1756.87792 NaN NaN NaN NaN NaN NaN NaN 52.013 1 52.013 51.513 52.513 0 0 0 0 0.9435 1 28765 28765 0 0 1 55536 75 37435 38260 64423 64423 0.029757952873296745 RWLWWQPWWWK 11 Unmodified _RWLWWQPWWWK_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.4452514648438 2 879.446237 1756.87792 NaN NaN NaN NaN NaN NaN NaN 58.963 1 58.963 58.463 59.463 0 0 0 0 0.9435 1 32840 32840 0 0 1 55537 75 37435 38260 64424 64424 0.029757952873296745 RWLWWQPWWWK 11 Unmodified _RWLWWQPWWWK_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.447021484375 2 879.446237 1756.87792 NaN NaN NaN NaN NaN NaN NaN 60.448 1 60.448 59.948 60.948 0 0 0 0 0.9435 1 33710 33710 0 0 1 55538 75 37435 38260 64425 64425 0.029757952873296745 RWLWWQPWWWK 11 Unmodified _RWLWWQPWWWK_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 879.4461669921875 2 879.446237 1756.87792 NaN NaN NaN NaN NaN NaN NaN 54.066 1 53.6 53.1 54.1 -0.46664 0 0 0 0.9435 1 29282 29282 0 0 1 55539 75 37435 38260 64426 64426 0.029757952873296745 RWLWWQPWWWK 11 Unmodified _RWLWWQPWWWK_ 0 0 0 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 879.4411010742188 2 879.446237 1756.87792 NaN NaN NaN NaN NaN NaN NaN 71.893 1 65.717 65.217 66.217 -6.1757 0 0 0 0.9435 1 47018 47018 0 0 1 55540 75 37435 38260 64427 64427 0.029757952873296745 RWMSQHNRF 9 Unmodified _RWMSQHNRF_ 0 0 0 nc|ENSG00000168092|P68402-3|PAFAH1B2;nc|ENSG00000168092|P68402-2|PAFAH1B2;ENST00000533206.1_1_11:117023163-117034692:+|nuORF;nc|ENSG00000168092|P68402-4|PAFAH1B2;ENSG00000168092|ENST00000527958|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 nc|ENSG00000168092|P68402-3|PAFAH1B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2062072753906 3 421.205091 1260.59344 0.51362 0.00021634 0.66564 0.00028037 1.1793 0.00049671 421.20537382291917 23.942 0.33344 21.115 20.915 21.248 -2.8273 46 19 3 0 0 0 0.05483 2 12927 12927;13044 34.222 12.685 1 13462000 55541 7718 37436 38261 64428;64429 64428 -0.02642953468671294 RWNFWKYLVN 10 Unmodified _RWNFWKYLVN_ 0 0 0 ENSG00000164294|ENST00000503787|GPX8 ENSG00000164294|ENST00000503787|GPX8 ENSG00000164294|ENST00000503787|GPX8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.9201354980469 3 475.919056 1424.73534 NaN NaN NaN NaN NaN NaN NaN 21.691 1 21.705 21.205 22.205 0.013796 0 0 0 0.99897 1 11122 11122 0.77653 0.14971 1 55542 7172 37437 38262 64430 64430 0.03996162825319516 RWPEAAALI 9 Unmodified _RWPEAAALI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7897338867188 2 513.790184 1025.56581 0.1065 5.4718E-05 -0.24346 -0.00012509 -0.13697 -7.0372E-05 513.7901297902422 65.435 0.42093 64.951 64.727 65.148 -0.48428 45 19 3 0 0 0 0.11784 2 35661 35661;35765 31.268 6.5945 1 11279000 55543 16188 37438 38263 64431;64432 64431 0.05405466542742943 RWPEAAALI 9 Unmodified _RWPEAAALI_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7908935546875 2 513.790184 1025.56581 0.79168 0.00040676 -0.24412 -0.00012543 0.54756 0.00028133 513.7901807028544 64.945 0.48048 64.945 64.739 65.22 7.6294E-06 45 23 3 0 0 0 0.18144 1 35588 35588 24.991 0.31707 1 5923400 55544 16188 37438 38263 64433 64433 0.05405466542742943 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5442810058594 3 383.545219 1147.61383 NaN NaN NaN NaN NaN NaN NaN 20.862 1 20.862 20.362 21.362 0 0 0 0 0.53226 1 10519 10519 14.405 7.1161 1 55545 16597 37439 38264 64434 64434 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5449829101562 3 383.545219 1147.61383 NaN NaN NaN NaN NaN NaN NaN 21.037 1 21.037 20.537 21.537 0 0 0 0 0.53226 1 10619 10619 14.405 7.1161 1 55546 16597 37439 38264 64435 64435 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5451965332031 3 383.545219 1147.61383 -0.30991 -0.00011886 0.2317 8.8869E-05 -0.078204 -2.9995E-05 383.54531060593234 20.834 0.47738 20.863 20.643 21.12 0.028357 52 21 3 0 0 0 0.094149 1 10602 10602 32.037 21.964 1 3795800 55547 16597 37439 38264 64436 64436 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5451965332031 3 383.545219 1147.61383 0.085564 3.2818E-05 -0.41589 -0.00015951 -0.33033 -0.0001267 383.5450253057099 20.839 0.61314 20.849 20.557 21.17 0.010551 148 40 5 0 0 0 0.044296 3 10541 10541;10647;10744 37.771 19.625 1 104980000 55548 16597 37439 38264 64437;64438;64439 64437 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8141479492188 2 574.81419 1147.61383 0.22508 0.00012938 -0.66448 -0.00038195 -0.4394 -0.00025257 574.8137489145207 20.826 0.37539 20.836 20.601 20.976 0.010551 33 18 2 0 0 0 0.05483 1 10660 10660 43.772 24.515 1 2748200 55549 16597 37439 38264 64440 64440 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5450439453125 3 383.545219 1147.61383 0.61229 0.00023484 -0.37553 -0.00014403 0.23676 9.0806E-05 383.54494769638006 23.706 1.0325 20.879 20.396 21.428 -2.8273 242 64 5 0 0 0 0.078314 4 12886 12675;12777;12886;12996 34.222 24.148 1 720490000 55550 16597 37439 38264 64441;64442;64443;64444 64443 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.814697265625 2 574.81419 1147.61383 0.2542 0.00014612 0.22306 0.00012822 0.47725 0.00027433 574.81428991491 23.704 0.72782 20.876 20.537 21.265 -2.8273 118 43 3 0 0 0 0.0082981 3 12865 12750;12865;12975 96.936 69.307 1 31728000 55551 16597 37439 38264 64445;64446;64447 64446 0.04592540462795114 RWPKKSAEF 9 Unmodified _RWPKKSAEF_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MSMS AL20221201_MKP_PDAC_01 4 383.5444030761719 3 383.545219 1147.61383 NaN NaN NaN NaN NaN NaN NaN 25.496 1 22.613 22.113 23.113 -2.8831 0 0 0 0.6557 1 13963 13963 7.1017 0 1 55552 16597 37439 38264 64448 64448 0.04592540462795114 RWPKKSAEFLL 11 Unmodified _RWPKKSAEFLL_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.9351806640625 3 458.934595 1373.78196 0.99735 0.00045772 -0.40877 -0.0001876 0.58858 0.00027012 458.9344208870158 46.245 0.89414 46.212 45.839 46.733 -0.033421 162 42 5 0 0 0 0.40509 5 24804 24711;24804;24912;25018;25129 21.241 15.007 1 189680000 55553 16597 37440 38265 64449;64450;64451;64452;64453 64450 0.11001602656597242 RWPKKSAEFLL 11 Unmodified _RWPKKSAEFLL_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.9356689453125 3 458.934595 1373.78196 0.76156 0.0003495 0.05904 2.7095E-05 0.8206 0.0003766 458.93464097184244 92.661 1.2564 86.485 85.757 87.014 -6.1757 279 78 4 0 0 0 0.011225 7 60848 60848;60969;61096;61221;61344;61474;61606 66.55 37.268 1 306960000 55554 16597 37440 38265 64454;64455;64456;64457;64458;64459;64460 64454 0.11001602656597242 RWPKKSAEFLL 11 Unmodified _RWPKKSAEFLL_ 0 0 0 nc|ENSG00000265681|P18621-3|RPL17;nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF nc|ENSG00000265681|P18621-3|RPL17 nc|ENSG00000265681|P18621-3|RPL17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.4012451171875 2 687.898254 1373.78196 0.7148 0.00049171 -0.015342 -1.0554E-05 0.69946 0.00048116 687.8982402432497 92.684 0.86926 86.508 85.937 86.806 -6.1757 99 53 2 0 0 0 4.5968E-06 5 61346 60965;61086;61216;61346;61479 118.21 74.437 1 22518000 55555 16597 37440 38265 64461;64462;64463;64464;64465 64464 0.11001602656597242 RWPKTAAGP 9 Unmodified _RWPKTAAGP_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2735900878906 2 492.274701 982.534849 NaN NaN NaN NaN NaN NaN NaN 20.972 1 20.982 20.482 21.482 0.010553 0 0 0 0.71962 1 10714 10714 8.7454 0.83525 1 + 55556 22156 37441 38266 64466 64466 0.04288313228516927 RWPKTAAGP 9 Unmodified _RWPKTAAGP_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2755737304688 2 492.274701 982.534849 0.17524 8.6264E-05 0.19499 9.5988E-05 0.37022 0.00018225 492.27484839756426 23.629 0.61509 20.802 20.563 21.178 -2.8273 78 36 3 0 0 0 0.010611 3 12837 12732;12837;12959 78.728 34.87 1 12483000 + 55557 22156 37441 38266 64467;64468;64469 64468 0.04288313228516927 RWPKTAAGP 9 Unmodified _RWPKTAAGP_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.274701 982.534849 0.39861 0.00019622 -0.10462 -5.15E-05 0.29399 0.00014473 492.27470940854676 20.809 0.34232 20.82 20.601 20.943 0.010553 0.0087418 -0.00021439 NaN 78.728 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2102200 + 55558 22156 37441 38266 0.04288313228516927 RWPKTAAGP 9 Unmodified _RWPKTAAGP_ 0 0 0 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 REV__nc|ENSG00000166833|Q8IVL1-4|NAV2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 492.274701 982.534849 0.17524 8.6264E-05 0.19499 9.5988E-05 0.37022 0.00018225 492.27484839756426 23.629 0.61509 20.802 20.563 21.178 -2.8273 -0.0087418 8.0586E-05 NaN 78.728 78 36 3 NaN NaN NaN NaN 0 NaN NaN 0 12483000 + 55559 22156 37441 38266 0.04288313228516927 RWPSVTSQEW 10 Unmodified _RWPSVTSQEW_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.8107299804688 2 638.309469 1274.60439 0.00587 3.7469E-06 0.15735 0.00010043 0.16322 0.00010418 638.309349266001 55.454 0.31907 55.385 55.158 55.477 -0.068737 40 15 3 0 0 0 0.10406 1 30075 30075 45.74 34.245 1 6040100 55560 2778 37442 38267 64470 64470 -0.02193272613362751 RWQLDLEDLYR 11 Unmodified _RWQLDLEDLYR_ 0 0 0 nc|ENSG00000145431|Q9NRA1-4|PDGFC;ENST00000506880.5_3_4:157684244-157699382:-|nuORF;nc|ENSG00000145431|Q9NRA1-2|PDGFC;ENSG00000145431|ENST00000502773|PDGFC;ENST00000511985.1_1_4:157691583-157731994:-|nuORF nc|ENSG00000145431|Q9NRA1-4|PDGFC nc|ENSG00000145431|Q9NRA1-4|PDGFC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1507.166870117188 1 1506.76995 1505.76268 -0.90764 -0.0013676 0.045102 6.7959E-05 -0.86254 -0.0012996 1507.7709214514866 30.842 0.12222 30.842 30.73 30.852 0 6 5 2 0 0 0 0.30605 1 16037 16037 0 0 1 1909900 55561 5698 37443 38268 64471 64471 0.030026015750536317 RWQMLAEGKNS 11 Unmodified _RWQMLAEGKNS_ 0 0 0 nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1;ENST00000569504.5_1_16:67859786-67861483:+|nuORF;nc|ENSG00000102904|Q2TAA8-2|TSNAXIP1;ENST00000466164.5_1_16:67859786-67861893:+|nuORF;ENST00000568990.5_1_16:67859786-67861893:+|nuORF nc|ENSG00000102904|Q2TAA8|TSNAXIP1 nc|ENSG00000102904|Q2TAA8|TSNAXIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.832763671875 2 660.329879 1318.6452 0.29535 0.00019503 0.58126 0.00038382 0.87661 0.00057885 660.831833536384 92.742 0.4418 86.567 86.346 86.788 -6.1757 66 27 3 0 0 0 0.28407 1 61354 61354 27.629 3.839 1 39750000 55562 2080 37444 38269 64472 64472 -0.001372545654021451 RWQQQWQQQ 9 Unmodified _RWQQQWQQQ_ 0 0 0 REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF REV__ENST00000253055.7_1_19:40718724-40719087:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2143859863281 3 439.214532 1314.62177 -0.13313 -5.8475E-05 0.33009 0.00014498 0.19695 8.6505E-05 439.2146219194767 23.116 0.16721 23.116 23.015 23.182 0 13 8 2 0 0 0 0.61381 1 11762 11762 0.23584 0.076522 1 373270 + 55563 24896 37445 38270 64473 64473 -0.022959322877113664 RWRCRWYGRRL 11 Unmodified _RWRCRWYGRRL_ 0 0 0 REV__ENST00000260702.3_1_10:100016643-100017456:-|nuORF REV__ENST00000260702.3_1_10:100016643-100017456:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2987670898438 3 536.624872 1606.85279 0.045075 2.4188E-05 -3.1819 -0.0017075 -3.1369 -0.0016833 536.6222094112791 40.39 0.73631 40.39 39.792 40.529 0 65 36 4 0 0 0 0.74157 1 21610 21610 0.094841 0 1 32632000 + 55564 24968 37446 38271 64474 64474 0.07363417213105095 RWRFYWKMVYE 11 Unmodified _RWRFYWKMVYE_ 0 0 0 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.4157104492188 2 832.413746 1662.81294 NaN NaN NaN NaN NaN NaN NaN 89.376 1 89.424 88.924 89.924 0.047852 0 0 0 0.9435 1 49719 49719 0 0 1 55565 10405 37447 38272 64475 64475 0.00804432699192148 RWRFYWKMVYE 11 Unmodified _RWRFYWKMVYE_ 0 0 0 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 ENSG00000206579|ENST00000327381|XKR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.1608276367188 2 832.413746 1662.81294 NaN NaN NaN NaN NaN NaN NaN 90.943 1 90.98 90.48 91.48 0.036499 0 0 0 0.9435 1 50585 50585 0 0 1 55566 10405 37447 38272 64476 64476 0.00804432699192148 RWRHFLLWRRK 11 Unmodified _RWRHFLLWRRK_ 0 0 0 REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.4883422851562 2 827.489302 1652.96405 NaN NaN NaN NaN NaN NaN NaN 89.276 1 89.323 88.823 89.823 0.047852 0 0 0 0.9435 1 49664 49664 0 0 1 + 55567 29281 37448 38273 64477 64477 0.16368799912697796 RWRKQRFPAKT 11 Unmodified _RWRKQRFPAKT_ 0 0 0 ENST00000295400.10_1_2:70675985-70676030:-|nuORF ENST00000295400.10_1_2:70675985-70676030:-|nuORF ENST00000295400.10_1_2:70675985-70676030:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 737.43017578125 2 737.431119 1472.84768 NaN NaN NaN NaN NaN NaN NaN 103.82 1 103.77 103.27 104.27 -0.048737 0 0 0 0.94313 1 57651 57651 0.26902 0.26902 1 55568 11489 37449 38274 64478 64478 0.1301743662215813 RWRKRWRRWRW 11 Unmodified _RWRKRWRRWRW_ 0 0 0 ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 914.5223388671875 2 914.521999 1827.02945 NaN NaN NaN NaN NaN NaN NaN 77.357 1 77.407 76.907 77.907 0.05011 0 0 0 0.9435 1 42694 42694 0 0 1 55569 11242 37450 38275 64479 64479 0.14901214158408038 RWRPVLHPF 9 Unmodified _RWRPVLHPF_ 0 0 0 REV__ENST00000408965.3_1_8:48650723-48651419:-|nuORF REV__ENST00000408965.3_1_8:48650723-48651419:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.2341003417969 3 403.233087 1206.67743 NaN NaN NaN NaN NaN NaN NaN 3.2958 1 0.81382 0.31382 1.3138 -2.482 0 0 0 0.86004 1 1677 1677 0.26902 0 1 + 55570 26676 37451 38276 64480 64480 0.08235945690557855 RWRPVLHPF 9 Unmodified _RWRPVLHPF_ 0 0 0 REV__ENST00000408965.3_1_8:48650723-48651419:-|nuORF REV__ENST00000408965.3_1_8:48650723-48651419:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.2330322265625 3 403.233087 1206.67743 NaN NaN NaN NaN NaN NaN NaN 5.2504 1 2.7685 2.2685 3.2685 -2.482 0 0 0 0.85261 1 2667 2667 1.1933 0.083588 1 + 55571 26676 37451 38276 64481 64481 0.08235945690557855 RWRRHHRRQRL 11 Unmodified _RWRRHHRRQRL_ 0 0 0 REV__ENSG00000132716|ENST00000368074|DCAF8 REV__ENSG00000132716|ENST00000368074|DCAF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.986083984375 2 828.985781 1655.95701 NaN NaN NaN NaN NaN NaN NaN 86.573 1 86.631 86.131 87.131 0.05822 0 0 0 0.9435 1 48085 48085 0 0 1 + 55572 19877 37452 38277 64482 64482 0.15526880084848926 RWRRHHRRQRL 11 Unmodified _RWRRHHRRQRL_ 0 0 0 REV__ENSG00000132716|ENST00000368074|DCAF8 REV__ENSG00000132716|ENST00000368074|DCAF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.989501953125 2 828.985781 1655.95701 NaN NaN NaN NaN NaN NaN NaN 88.568 1 88.616 88.116 89.116 0.047852 0 0 0 0.9435 1 49275 49275 0 0 1 + 55573 19877 37452 38277 64483 64483 0.15526880084848926 RWRRIRPLR 9 Unmodified _RWRRIRPLR_ 0 0 0 REV__nc|ENSG00000169955|Q9BV97-2|ZNF747 REV__nc|ENSG00000169955|Q9BV97-2|ZNF747 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.4186401367188 2 654.915439 1307.81632 1.4417 0.00094416 0.98965 0.00064814 2.4313 0.0015923 654.9157536251317 105.74 0.64306 99.566 99.396 100.04 -6.1757 166 76 3 0 0 0 0.59218 2 70877 70877;71096 1.8442 1.3195 1 9170400 + 55574 29772 37453 38278 64484;64485 64484 0.17472908378749707 RWRRRLPLL 9 Unmodified _RWRRRLPLL_ 0 0 0 REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF REV__ENST00000418337.6_2_7:151292537-151329253:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.4085083007812 2 633.406915 1264.79928 NaN NaN NaN NaN NaN NaN NaN 106.45 1 100.27 99.773 100.77 -6.1757 0 0 0 0.85737 1 71253 71253 0.6015 0 1 + 55575 26800 37454 38279 64486 64486 0.17746987772920875 RWRRRRRRRRA 11 Unmodified _RWRRRRRRRRA_ 0 0 0 REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 561.018310546875 3 561.019607 1680.03699 NaN NaN NaN NaN NaN NaN NaN 43.906 1 39.141 38.641 39.641 -4.7648 0 0 0 0.9435 1 26732 26732 0 0 1 + 55576 28139 37455 38280 64487 64487 0.22417366478680378 RWRRRRRRRRA 11 Unmodified _RWRRRRRRRRA_ 0 0 0 REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 561.0196533203125 3 561.019607 1680.03699 NaN NaN NaN NaN NaN NaN NaN 44.263 1 39.411 38.911 39.911 -4.852 0 0 0 0.9435 1 26999 26999 0 0 1 + 55577 28139 37455 38280 64488 64488 0.22417366478680378 RWRRWRRRPGK 11 Unmodified _RWRRWRRRPGK_ 0 0 0 ENST00000514589.5_1_4:76439408-76439555:-|nuORF ENST00000514589.5_1_4:76439408-76439555:-|nuORF ENST00000514589.5_1_4:76439408-76439555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.4764404296875 2 805.4798 1608.94505 NaN NaN NaN NaN NaN NaN NaN 84.612 1 84.675 84.175 85.175 0.063171 0 0 0 0.94184 1 46824 46824 1.1933 0.88631 1 55578 14654 37456 38281 64489 64489 0.16493263341658349 RWRRWRWRWPA 11 Unmodified _RWRRWRWRWPA_ 0 0 0 REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF REV__ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 856.4702758789062 2 856.468901 1710.92325 NaN NaN NaN NaN NaN NaN NaN 57.129 1 57.129 56.629 57.629 0 0 0 0 0.9435 1 31786 31786 0 0 1 + 55579 24899 37457 38282 64490 64490 0.09622458593094052 RWRWQRDMH 9 Unmodified _RWRWQRDMH_ 0 0 0 nc|ENSG00000130558|Q99784-4|OLFM1;nc|ENSG00000130558|Q99784-3|OLFM1 nc|ENSG00000130558|Q99784-4|OLFM1 nc|ENSG00000130558|Q99784-4|OLFM1 MSMS AL20221201_MKP_PDAC_01 4 685.838134765625 2 685.835997 1369.65744 NaN NaN NaN NaN NaN NaN NaN 15.198 1 12.671 12.171 13.171 -2.5273 0 0 0 0.85798 1 7776 7776 0.52476 0.12405 1 55580 16187 37458 38283 64491 64491 -0.012601733117207914 RWRWRKRWRLT 11 Unmodified _RWRWRKRWRLT_ 0 0 0 REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 850.5009155273438 2 850.497659 1698.98076 NaN NaN NaN NaN NaN NaN NaN 86.367 1 86.425 85.925 86.925 0.05822 0 0 0 0.9435 1 47943 47943 0 0 1 + 55581 28098 37459 38284 64492 64492 0.15923300798658602 RWRYPSLSLH 10 Unmodified _RWRYPSLSLH_ 0 0 0 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.85595703125 2 657.856921 1313.69929 NaN NaN NaN NaN NaN NaN NaN 74.219 1 74.219 73.719 74.719 0 0 0 0 0.99248 1 41304 41304 1.4819 0.28856 1 55582 4504 37460 38285 64493 64493 0.054987056484606 RWRYRCWERRF 11 Unmodified _RWRYRCWERRF_ 0 0 0 ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF ENST00000328599.4_1_8:125463328-125463391:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 857.435546875 2 857.436409 1712.85827 NaN NaN NaN NaN NaN NaN NaN 38.875 1 38.875 38.375 39.375 0 0 0 0 0.94313 1 20793 20793 0.26902 0.26902 1 55583 11836 37461 38286 64494 64494 0.030350960048963316 RWSCHEQPY 9 Unmodified _RWSCHEQPY_ 0 0 0 ENST00000601322.5_2_19:6436333-6444241:-|nuORF;ENST00000264088.8_1_19:6436333-6444241:-|nuORF ENST00000601322.5_2_19:6436333-6444241:-|nuORF ENST00000601322.5_2_19:6436333-6444241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2613525390625 2 603.261465 1204.50838 0.39487 0.00023821 0.58295 0.00035167 0.97782 0.00058988 603.2617886355712 93.867 0.20035 93.447 93.325 93.526 -0.42043 16 8 3 0 0 0 0.61256 1 51263 51263 0.6015 0 1 266290 55584 11305 37462 38287 64495 64495 -0.08569743725115586 RWSCHEQPY 9 Unmodified _RWSCHEQPY_ 0 0 0 ENST00000601322.5_2_19:6436333-6444241:-|nuORF;ENST00000264088.8_1_19:6436333-6444241:-|nuORF ENST00000601322.5_2_19:6436333-6444241:-|nuORF ENST00000601322.5_2_19:6436333-6444241:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 603.261465 1204.50838 1.7212 0.0010384 -1.7044 -0.0010282 0.016884 1.0186E-05 603.2595552841852 93.401 0.2523 93.424 93.242 93.494 0.022987 -0.011351 -0.0024153 NaN 0.6015 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1112000 55585 11305 37462 38287 -0.08569743725115586 RWSEVTRKLEF 11 Unmodified _RWSEVTRKLEF_ 0 0 0 ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.264892578125 3 484.264892 1449.77285 0.7381 0.00035744 -0.22395 -0.00010845 0.51415 0.00024899 484.26464083085466 42.971 0.21909 42.955 42.823 43.042 -0.015671 24 9 3 0 0 0 0.0090977 1 23008 23008 68.83 55.974 1 12601000 55586 10018 37463 38288 64496 64496 0.06595209300280658 RWSLCELLE 9 Unmodified _RWSLCELLE_ 0 0 0 REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF REV__ENST00000509976.1_1_5:41904493-41911314:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8648986816406 3 383.53047 1147.56958 0.079722 3.0576E-05 1.4374 0.00055127 1.5171 0.00058184 383.86510289627114 20.588 0.23609 20.598 20.439 20.675 0.010553 17 10 3 0 0 0 0.55144 1 10510 10510 2.4985 0 1 513240 + 55587 24242 37464 38289 64497 64497 0.0016976825429537712 RWSPVRPLVF 10 Unmodified _RWSPVRPLVF_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.7570190429688 3 419.580264 1255.71896 0.8651 0.00036298 0.85546 0.00035893 1.7206 0.00072191 419.58065194500637 63.824 0.2241 63.813 63.695 63.919 -0.010532 19 10 2 0 0 0 0.23239 1 34931 34931 14.171 7.1336 1 3945400 55588 3425 37465 38290 64498 64498 0.10133081659205345 RWSPVRPLVF 10 Unmodified _RWSPVRPLVF_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.3687133789062 2 628.866757 1255.71896 1.1023 0.0006932 0.019673 1.2372E-05 1.122 0.00070557 628.8667045616567 94.334 0.33454 88.159 87.947 88.282 -6.1757 62 19 4 0 0 0 0.0044938 2 62402 62402;62515 100.09 76.301 1 158390000 55589 3425 37465 38290 64499;64500 64499 0.10133081659205345 RWSPVRPLVF 10 Unmodified _RWSPVRPLVF_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5807800292969 3 419.580264 1255.71896 1.6015 0.00067195 -0.023997 -1.0069E-05 1.5775 0.00066188 419.58026197550294 94.334 0.56587 88.158 87.806 88.372 -6.1757 62 18 4 0 0 0 0.047829 2 62416 62416;62538 44.945 36.789 1 126510000 55590 3425 37465 38290 64501;64502 64501 0.10133081659205345 RWSPVVWHI 9 Unmodified _RWSPVVWHI_ 0 0 0 ENST00000556883.1_1_14:93650616-93651154:-|nuORF ENST00000556883.1_1_14:93650616-93651154:-|nuORF ENST00000556883.1_1_14:93650616-93651154:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 393.8855895996094 3 393.885576 1178.6349 NaN NaN NaN NaN NaN NaN NaN 93.358 1 87.182 86.682 87.682 -6.1757 0 0 0 0.41144 1 61787 61787 19.362 16.627 1 55591 15247 37466 38291 64503 64503 0.052725505623357094 RWSQPWRWRYW 11 Unmodified _RWSQPWRWRYW_ 0 0 0 ENST00000380009.8_1_5:94890875-94891094:+|nuORF ENST00000380009.8_1_5:94890875-94891094:+|nuORF ENST00000380009.8_1_5:94890875-94891094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.0741577148438 2 853.9262 1705.83785 NaN NaN NaN NaN NaN NaN NaN 93.19 1 93.213 92.713 93.713 0.022987 0 0 0 0.9435 1 51816 51816 0 0 1 55592 12584 37467 38292 64504 64504 0.013162486167857423 RWSRPWWPREW 11 Unmodified _RWSRPWWPREW_ 0 0 0 REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF REV__ENST00000481276.1_1_1:1602946-1608282:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2786865234375 3 547.944376 1640.8113 0.21144 0.00011586 -0.010445 -5.7232E-06 0.201 0.00011014 547.9443448255097 53.102 0.27486 53.039 52.882 53.157 -0.063423 38 13 4 0 0 0 0.7418 1 28776 28776 0.32927 0.32927 1 9416000 + 55593 27691 37468 38293 64505 64505 0.01652559725471292 RWSTISENLF 10 Unmodified _RWSTISENLF_ 0 0 0 ENSG00000075188|ENST00000552283|NUP37 ENSG00000075188|ENST00000552283|NUP37 ENSG00000075188|ENST00000552283|NUP37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.821044921875 2 626.81967 1251.62479 1.1142 0.0006984 0.98163 0.0006153 2.0958 0.0013137 626.8197841163695 66.505 0.20209 66.514 66.38 66.582 0.0095673 15 9 2 0 0 0 0.1887 1 36496 36496 40.239 7.4535 1 3938400 55594 1144 37469 38294 64506 64506 0.009038980464310953 RWSTLSFPHLM 11 Unmodified _RWSTLSFPHLM_ 0 0 0 REV__ENST00000477392.1_1_7:150139853-150139958:+|nuORF REV__ENST00000477392.1_1_7:150139853-150139958:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 687.8533935546875 2 687.85299 1373.69143 0.17574 0.00012088 0.19432 0.00013366 0.37006 0.00025454 687.8530062575991 67.084 0.43349 67.084 66.86 67.294 0 61 19 4 0 0 0 0.69316 1 37330 37330 4.897 1.3005 1 10743000 + 55595 27610 37470 38295 64507 64507 0.019528103366610594 RWSYRRRSRYL 11 Unmodified _RWSYRRRSRYL_ 0 0 0 REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF REV__ENST00000491215.1_1_6:32163881-32163974:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.7251892089844 4 400.474829 1597.87021 0.33615 0.00013462 -0.48308 -0.00019346 -0.14693 -5.884E-05 400.47462812692294 16.763 0.10892 14.206 14.133 14.242 -2.557 28 19 2 0 0 0 0.74429 1 8683 8683 0.094841 0.094841 1 3299000 + 55596 27890 37471 38296 64508 64508 0.09519036019787563 RWTDGLYYL 9 Unmodified _RWTDGLYYL_ 0 0 0 nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19;ENSG00000119403|ENST00000373896|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7997436523438 2 593.798206 1185.58186 0.81786 0.00048565 0.15964 9.4796E-05 0.97751 0.00058044 594.2995380711973 91.713 0.22925 85.537 85.401 85.631 -6.1757 22 12 2 0 0 0 0.14859 1 60630 60630 36.506 17.249 1 7473900 55597 3432 37472 38297 64509 64509 -0.0035087201099486265 RWTEIKHEELE 11 Unmodified _RWTEIKHEELE_ 0 0 0 REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 REV__nc|ENSG00000106617|Q9UGJ0-3|PRKAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.4404602050781 4 368.190037 1468.73104 -0.56864 -0.00020937 0.021301 7.843E-06 -0.54734 -0.00020152 368.1900091342743 0.033606 0.098596 -0.040314 -0.069801 0.028795 -0.07392 40 23 3 0 0 0 0.7453 1 21 21 0 0 1 217830 + 55598 18520 37473 38298 64510 64510 0.01542608821137037 RWTEYGLTF 9 Unmodified _RWTEYGLTF_ 0 0 0 ENSG00000213585|ENST00000265333|VDAC1;VDAC1|p.T72A|1|0.19|ENSG00000213585|chr5:133991058-133991058|T/C|missense_variant;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF ENSG00000213585|ENST00000265333|VDAC1 ENSG00000213585|ENST00000265333|VDAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.7906494140625 2 586.790381 1171.56621 0.49786 0.00029214 -0.96687 -0.00056735 -0.46901 -0.00027521 586.7894916051897 67.669 0.32047 67.687 67.572 67.893 0.018036 28 15 3 0 0 0 0.078314 1 37160 37160 38.176 7.539 1 6209700 55599 10444 37474 38299 64511 64511 -0.01271158528061278 RWTEYGLTF 9 Unmodified _RWTEYGLTF_ 0 0 0 ENSG00000213585|ENST00000265333|VDAC1;VDAC1|p.T72A|1|0.19|ENSG00000213585|chr5:133991058-133991058|T/C|missense_variant;ENST00000434069.1_1_X:91238282-91238345:-|nuORF;ENST00000466080.1_1_5:133324828-133328703:-|nuORF ENSG00000213585|ENST00000265333|VDAC1 ENSG00000213585|ENST00000265333|VDAC1 MSMS AL20221201_MKP_PDAC_01 4 586.7907104492188 2 586.790381 1171.56621 NaN NaN NaN NaN NaN NaN NaN 85.993 1 79.818 79.318 80.318 -6.1757 0 0 0 0.12101 1 56675 56675 40.239 14.84 1 55600 10444 37474 38299 64512 64512 -0.01271158528061278 RWTGARRV 8 Unmodified _RWTGARRV_ 0 0 0 REV__ENST00000398208.2_1_21:44299526-44299646:-|nuORF REV__ENST00000398208.2_1_21:44299526-44299646:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2908325195312 2 501.291217 1000.56788 0.26379 0.00013224 -0.71433 -0.00035809 -0.45054 -0.00022585 501.2911674712998 74.338 0.92743 74.382 74.096 75.023 0.043983 67 41 2 0 0 0 0.80311 1 40946 40946 4.756 0.81161 1 1997700 + 55601 26563 37475 38300 64513 64513 0.06761940071226036 RWVARVFEI 9 Unmodified _RWVARVFEI_ 0 0 0 ENSG00000139180|ENST00000266544|NDUFA9 ENSG00000139180|ENST00000266544|NDUFA9 ENSG00000139180|ENST00000266544|NDUFA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5615539550781 3 392.560981 1174.66111 1.2895 0.0005062 -0.010198 -4.0032E-06 1.2793 0.0005022 392.56120691110226 94.74 0.10073 88.564 88.509 88.61 -6.1757 8 5 2 0 0 0 0.047714 1 62762 62762 45.74 26.114 1 4942000 55602 5132 37476 38301 64514 64514 0.08076819733810225 RWVRMKKKL 9 Unmodified _RWVRMKKKL_ 0 0 0 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8905639648438 2 622.892252 1243.76995 NaN NaN NaN NaN NaN NaN NaN 96.166 1 96.159 95.659 96.659 -0.007019 0 0 0 0.85798 1 53416 53416 0.52476 0.12405 1 + 55603 23846 37477 38302 64515 64515 0.15781707432438452 RWWFRRLFLIF 11 Unmodified _RWWFRRLFLIF_ 0 0 0 ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF ENST00000281830.3_1_2:223918801-223918864:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 820.4697265625 2 820.472255 1638.92996 NaN NaN NaN NaN NaN NaN NaN 52.744 1 52.744 52.244 53.244 0 0 0 0 0.9435 1 29200 29200 0 0 1 55604 11418 37478 38303 64516 64516 0.13604958701102987 RWWFSWRRRDF 11 Unmodified _RWWFSWRRRDF_ 0 0 0 ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 849.432861328125 2 849.43165 1696.84875 NaN NaN NaN NaN NaN NaN NaN 90.924 1 90.429 89.929 90.929 -0.49457 0 0 0 0.94307 1 49704 49704 0.30703 0.30703 1 55605 4451 37479 38304 64517 64517 0.02819650991045819 RWWHRRYEDVE 11 Unmodified _RWWHRRYEDVE_ 0 0 0 REV__nc|ENSG00000010072|Q9H040-3|SPRTN REV__nc|ENSG00000010072|Q9H040-3|SPRTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.3951416015625 2 816.39493 1630.77531 NaN NaN NaN NaN NaN NaN NaN 46.73 1 46.73 46.23 47.23 0 0 0 0 0.9435 1 25551 25551 0 0 1 + 55606 17041 37480 38305 64518 64518 -0.014849422420411429 RWWHRRYEDVE 11 Unmodified _RWWHRRYEDVE_ 0 0 0 REV__nc|ENSG00000010072|Q9H040-3|SPRTN REV__nc|ENSG00000010072|Q9H040-3|SPRTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 816.5655517578125 2 816.39493 1630.77531 NaN NaN NaN NaN NaN NaN NaN 76.306 1 75.827 75.327 76.327 -0.47945 0 0 0 0.9435 1 41769 41769 0 0 1 + 55607 17041 37480 38305 64519 64519 -0.014849422420411429 RWWLVKNE 8 Unmodified _RWWLVKNE_ 0 0 0 nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 nc|ENSG00000198758|Q8TE67-2|EPS8L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8184814453125 2 565.808908 1129.60326 NaN NaN NaN NaN NaN NaN NaN 46.135 1 46.107 45.607 46.607 -0.028011 0 0 0 0.81255 1 24809 24809 28.487 6.7402 1 55608 10144 37481 38306 64520 64520 0.043645578083669534 RWWPRCWAAA 10 Unmodified _RWWPRCWAAA_ 0 0 0 ENST00000298743.8_1_9:89561621-89561816:-|nuORF ENST00000298743.8_1_9:89561621-89561816:-|nuORF ENST00000298743.8_1_9:89561621-89561816:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8818359375 3 434.881948 1301.62402 NaN NaN NaN NaN NaN NaN NaN 84.044 1 83.545 83.045 84.045 -0.49961 0 0 0 1.0061 1 45996 45996 0 0 1 55609 11537 37482 38307 64521 64521 -0.014731750836062929 RWWQRLLPWRL 11 Unmodified _RWWQRLLPWRL_ 0 0 0 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 ENSG00000176410|ENST00000395176|DNAJC30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.4658203125 2 805.464961 1608.91537 NaN NaN NaN NaN NaN NaN NaN 102.46 1 102.42 101.92 102.92 -0.045853 0 0 0 0.9435 1 56914 56914 0 0 1 55610 8592 37483 38308 64522 64522 0.13526886552972428 RWWQWHRLKLY 11 Unmodified _RWWQWHRLKLY_ 0 0 0 REV__nc|ENSG00000133026|P35580|MYH10 REV__nc|ENSG00000133026|P35580|MYH10 MSMS AL20221201_MKP_PDAC_01 4 836.4567260742188 2 836.454594 1670.89463 NaN NaN NaN NaN NaN NaN NaN 68.093 1 61.918 61.418 62.418 -6.1757 0 0 0 0.94307 1 44416 44416 0.30703 0.30703 1 + 55611 19898 37484 38309 64523 64523 0.08602296173307877 RWWRFLLWSLR 11 Unmodified _RWWRFLLWSLR_ 0 0 0 REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF REV__ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.9602661132812 2 809.959512 1617.90447 NaN NaN NaN NaN NaN NaN NaN 93.511 1 93.511 93.011 94.011 0 0 0 0 0.9435 1 51698 51698 0 0 1 + 55612 26907 37485 38310 64524 64524 0.12023484178689614 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.496337890625 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 56.336 1 56.336 55.836 56.836 0 0 0 0 0.9435 1 31331 31331 0 0 1 + 55613 26102 37486 38311 64525 64525 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4969482421875 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 73.808 1 67.633 67.133 68.133 -6.1757 0 0 0 0.9435 1 48261 48261 0 0 1 + 55614 26102 37486 38311 64526 64526 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4982299804688 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 74.015 1 67.84 67.34 68.34 -6.1757 0 0 0 0.9435 1 48395 48395 0 0 1 + 55615 26102 37486 38311 64527 64527 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4990234375 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 74.21 1 68.034 67.534 68.534 -6.1757 0 0 0 0.9435 1 48519 48519 0 0 1 + 55616 26102 37486 38311 64528 64528 0.171083546072623 RWWRRPRRPRR 11 Unmodified _RWWRRPRRPRR_ 0 0 0 REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF REV__ENST00000372022.5_1_9:136199397-136199478:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 839.4982299804688 2 839.498524 1676.9825 NaN NaN NaN NaN NaN NaN NaN 74.384 1 68.208 67.708 68.708 -6.1757 0 0 0 0.9435 1 48630 48630 0 0 1 + 55617 26102 37486 38311 64529 64529 0.171083546072623 RWWRRRRRRGE 11 Unmodified _RWWRRRRRRGE_ 0 0 0 REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.47509765625 2 835.477789 1668.94102 NaN NaN NaN NaN NaN NaN NaN 63.627 1 63.627 63.127 64.127 0 0 0 0 0.9435 1 35491 35491 0 0 1 + 55618 27349 37487 38312 64530 64530 0.13331173847950595 RWWRRRRRRGE 11 Unmodified _RWWRRRRRRGE_ 0 0 0 REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 835.4754638671875 2 835.477789 1668.94102 NaN NaN NaN NaN NaN NaN NaN 59.057 1 58.996 58.496 59.496 -0.060719 0 0 0 0.9435 1 32179 32179 0 0 1 + 55619 27349 37487 38312 64531 64531 0.13331173847950595 RWWRRRRRRGE 11 Unmodified _RWWRRRRRRGE_ 0 0 0 REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF REV__ENST00000463413.1_3_7:129710461-129710557:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 835.8159790039062 2 835.477789 1668.94102 NaN NaN NaN NaN NaN NaN NaN 109.36 1 109.31 108.81 109.81 -0.047607 0 0 0 0.9435 1 60542 60542 0 0 1 + 55620 27349 37487 38312 64532 64532 0.13331173847950595 RWWRRWAVRQL 11 Unmodified _RWWRRWAVRQL_ 0 0 0 REV__ENST00000497184.5_1_7:44091401-44091476:+|nuORF REV__ENST00000497184.5_1_7:44091401-44091476:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5875244140625 4 403.982556 1611.90112 -0.22704 -9.1721E-05 2.2487 0.00090845 2.0217 0.00081673 403.98351542255875 29.892 0.39835 29.922 29.693 30.091 0.030104 21 15 2 0 0 0 0.30604 1 15525 15525 0.094841 0.011491 1 1030200 + 55621 27975 37488 38313 64533 64533 0.11964234124684481 RWWRVWLEKRI 11 Unmodified _RWWRVWLEKRI_ 0 0 0 ENST00000519528.1_1_8:103299768-103305927:-|nuORF ENST00000519528.1_1_8:103299768-103305927:-|nuORF ENST00000519528.1_1_8:103299768-103305927:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.4707641601562 2 814.470244 1626.92593 NaN NaN NaN NaN NaN NaN NaN 74.905 1 74.905 74.405 75.405 0 0 0 0 0.9435 1 41674 41674 0 0 1 55622 14708 37489 38314 64534 64534 0.13754869207400588 RWWWRWQHGEP 11 Unmodified _RWWWRWQHGEP_ 0 0 0 ENST00000305123.5_1_2:227663257-227663680:-|nuORF ENST00000305123.5_1_2:227663257-227663680:-|nuORF ENST00000305123.5_1_2:227663257-227663680:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 812.3896484375 2 812.389451 1622.76435 NaN NaN NaN NaN NaN NaN NaN 35.913 1 31.721 31.221 32.221 -4.1928 0 0 0 0.9435 1 20908 20908 0 0 1 55623 11613 37490 38315 64535 64535 -0.022122998256918436 RWYQFTNYQWF 11 Unmodified _RWYQFTNYQWF_ 0 0 0 REV__ENSG00000135045|ENST00000376854|C9orf40 REV__ENSG00000135045|ENST00000376854|C9orf40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 819.8787841796875 2 819.87805 1637.74155 NaN NaN NaN NaN NaN NaN NaN 76.192 1 75.713 75.213 76.213 -0.47945 0 0 0 0.9435 1 41709 41709 0 0 1 + 55624 20031 37491 38316 64536 64536 -0.05181363733845501 RWYRHQWRRRW 11 Unmodified _RWYRHQWRRRW_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 893.4720458984375 2 893.474715 1784.93488 NaN NaN NaN NaN NaN NaN NaN 48.894 1 43.498 42.998 43.998 -5.3961 0 0 0 0.9435 1 30492 30492 0 0 1 + 55625 28850 37492 38317 64537 64537 0.07380655616407239 RYAALRELI 9 Unmodified _RYAALRELI_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.888916015625 3 368.888986 1103.64513 0.41027 0.00015134 0.52452 0.00019349 0.93479 0.00034483 368.88907305715384 49.097 0.32425 48.725 48.558 48.882 -0.37172 34 15 3 0 0 0 0.047194 1 26363 26363 46.022 15.319 1 6005900 55626 5388 37493 38318 64538 64538 0.09745113496887825 RYAALRELI 9 Unmodified _RYAALRELI_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8890380859375 3 368.888986 1103.64513 0.21483 7.925E-05 0.37703 0.00013908 0.59186 0.00021833 368.8891079991675 48.77 0.33245 48.727 48.555 48.887 -0.04369 47 16 4 0 0 0 0.02676 2 26296 26296;26408 57.108 26.404 1 31356000 55627 5388 37493 38318 64539;64540 64539 0.09745113496887825 RYAALRELI 9 Unmodified _RYAALRELI_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8299560546875 2 552.82984 1103.64513 0.343 0.00018962 -0.31162 -0.00017227 0.03138 1.7348E-05 552.8296890883531 48.769 0.3532 48.725 48.555 48.908 -0.04369 45 17 4 0 0 0 0.21589 1 26328 26328 17.113 3.2068 1 34794000 55628 5388 37493 38318 64541 64541 0.09745113496887825 RYAALRELI 9 Unmodified _RYAALRELI_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8892822265625 3 368.888986 1103.64513 1.909 0.00070421 0.72587 0.00026776 2.6349 0.00097197 368.88919042150644 88.187 0.54758 82.011 81.729 82.276 -6.1757 71 30 3 0 0 0 0.085786 1 58156 58156 36.395 21.438 1 23454000 55629 5388 37493 38318 64542 64542 0.09745113496887825 RYAALRELI 9 Unmodified _RYAALRELI_ 0 0 0 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 ENSG00000142039|ENST00000269967|CCDC97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8301391601562 2 552.82984 1103.64513 1.3124 0.00072553 0.11925 6.5927E-05 1.4317 0.00079146 552.830036573352 88.18 0.67274 82.004 81.587 82.26 -6.1757 80 37 3 0 0 0 0.067618 1 58167 58167 43.772 13.136 1 29629000 55630 5388 37493 38318 64543 64543 0.09745113496887825 RYAAQLPAL 9 Unmodified _RYAAQLPAL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7904968261719 2 501.790184 1001.56581 0.1419 7.1205E-05 -0.15563 -7.8093E-05 -0.013727 -6.8881E-06 501.790353267822 53.687 0.79957 53.236 52.783 53.582 -0.45173 117 39 7 0 0 0 0.038285 2 29043 29043;29151 50.855 18.55 1 38422000 55631 5336 37494 38319 64544;64545 64544 0.0650946654272957 RYAAQLPAL 9 Unmodified _RYAAQLPAL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7910461425781 2 501.790184 1001.56581 -0.070765 -3.5509E-05 0.21 0.00010537 0.13923 6.9864E-05 501.7902811766485 53.385 0.45561 53.321 53.044 53.499 -0.063423 56 22 3 0 0 0 0.016184 2 28859 28859;28961 67.344 35.038 1 12321000 55632 5336 37494 38319 64546;64547 64546 0.0650946654272957 RYAAQLPAL 9 Unmodified _RYAAQLPAL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.791259765625 2 501.790184 1001.56581 1.3349 0.00066986 -0.69582 -0.00034916 0.63912 0.0003207 501.7898710175946 59.145 0.78987 53.071 52.702 53.492 -6.0745 121 43 4 0 0 0 0.038285 3 37798 37798;37924;38061 50.855 18.55 1 262830000 55633 5336 37494 38319 64548;64549;64550 64548 0.0650946654272957 RYAAQLPALF 10 Unmodified _RYAAQLPALF_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3228759765625 2 575.324391 1148.63423 0.23141 0.00013314 -0.93551 -0.00053822 -0.7041 -0.00040508 575.3240107237374 72.84 0.30835 72.882 72.68 72.989 0.041725 24 14 2 0 0 0 0.32493 1 40140 40140 24.021 5.8856 1 2635500 55634 5336 37495 38320 64551 64551 0.06585711122579596 RYADLTEDQL 10 Unmodified _RYADLTEDQL_ 0 0 0 ENST00000548270.1_1_12:94034600-94035134:-|nuORF;ENST00000467867.1_1_10:99187588-99192278:+|nuORF;ENSG00000226784|ENST00000458128|PGAM4;ENSG00000171314|ENST00000334828|PGAM1;PGAM1|p.R140H|1|0.16|ENSG00000171314|chr10:97430959-97430959|G/A|missense_variant ENST00000548270.1_1_12:94034600-94035134:-|nuORF ENST00000548270.1_1_12:94034600-94035134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2974243164062 2 612.298767 1222.58298 -0.053861 -3.2979E-05 0.25041 0.00015332 0.19655 0.00012034 612.2987654764707 41.903 0.20654 41.903 41.804 42.011 0 18 10 2 0 0 0 0.078742 1 22655 22655 51.415 16.483 1 4562400 55635 8090 37496 38321 64552 64552 -0.019407024327847466 RYADLYAASF 10 Unmodified _RYADLYAASF_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.791015625 2 588.787838 1175.56112 0.20399 0.00012011 3.5314 0.0020793 3.7354 0.0021994 588.7901885539209 55.058 0.24202 54.581 54.429 54.671 -0.47798 28 11 3 0 0 0 0.06987 1 29836 29836 53.404 26.52 1 7652400 55636 1191 37497 38322 64553 64553 -0.01963462390699533 RYADRVKEL 9 Unmodified _RYADRVKEL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C;nc|ENSG00000186638|Q5T7B8-2|KIF24;nc|ENSG00000186638|Q5T7B8-4|KIF24;ENSG00000186638|ENST00000402558|KIF24 nc|ENSG00000142945|Q99661-2|KIF2C;nc|ENSG00000186638|Q5T7B8-4|KIF24 nc|ENSG00000142945|Q99661-2|KIF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8842468261719 3 383.884012 1148.63021 -0.4546 -0.00017451 0.24838 9.5348E-05 -0.20623 -7.9167E-05 383.88405976603514 20.545 0.20206 20.545 20.444 20.646 0 42 19 3 0 0 0 0.2546 1 10326 10326 23.801 4.4391 1 3497500 55637 5453;9490 37498 38323 64554 64554 0.061836216289066215 RYAEALEQHW 10 Unmodified _RYAEALEQHW_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.8797302246094 3 434.879038 1301.61528 0.81347 0.00035376 0.37217 0.00016185 1.1856 0.00051561 434.8793166267607 43.453 0.30743 38.689 38.581 38.888 -4.7648 43 19 3 0 0 0 0.40046 1 26381 26381 14.838 11.518 1 13971000 55638 6769 37499 38324 64555 64555 -0.023458702391280895 RYAEALEQHW 10 Unmodified _RYAEALEQHW_ 0 0 0 nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL nc|ENSG00000160949|Q96HA7-2|TONSL MSMS AL20221201_MKP_PDAC_01 4 651.8150634765625 2 651.814919 1301.61528 NaN NaN NaN NaN NaN NaN NaN 43.475 1 38.71 38.21 39.21 -4.7648 0 0 0 0.042083 1 26417 26417 59.368 40.111 1 55639 6769 37499 38324 64556 64556 -0.023458702391280895 RYAEEVGIF 9 Unmodified _RYAEEVGIF_ 0 0 0 ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2769775390625 2 542.277106 1082.53966 0.54301 0.00029446 -0.41766 -0.00022649 0.12535 6.7974E-05 542.2770937990738 53.755 0.35182 53.755 53.506 53.858 0 45 16 4 0 0 0 0.078314 1 29756 29756 38.176 14.155 1 18940000 55640 1651 37500 38325 64557 64557 0.0016915258061089844 RYAEEVGIF 9 Unmodified _RYAEEVGIF_ 0 0 0 ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2785034179688 2 542.277106 1082.53966 NaN NaN NaN NaN NaN NaN NaN 54.237 1 53.77 53.27 54.27 -0.46664 0 0 0 0.27852 1 29383 29383 26.268 6.8291 1 55641 1651 37500 38325 64558 64558 0.0016915258061089844 RYAEEVGIF 9 Unmodified _RYAEEVGIF_ 0 0 0 ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2783813476562 2 542.277106 1082.53966 0.82013 0.00044474 -0.22321 -0.00012104 0.59692 0.0003237 542.2767910696303 60.047 0.42443 53.933 53.713 54.138 -6.1147 40 22 2 0 0 0 0.07087 1 38569 38569 39.95 11.463 1 33715000 55642 1651 37500 38325 64559 64559 0.0016915258061089844 RYAEEVGIFF 10 Unmodified _RYAEEVGIFF_ 0 0 0 ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.8112182617188 2 615.811313 1229.60807 0.88037 0.00054214 -1.2276 -0.00075596 -0.34721 -0.00021382 615.8105707578383 75.379 0.38559 74.902 74.719 75.104 -0.47714 55 21 3 0 0 0 0.30444 2 41207 41207;41305 27.223 13.317 1 8944200 55643 1651 37501 38326 64560;64561 64560 0.002453971604609251 RYAEEVGIFF 10 Unmodified _RYAEEVGIFF_ 0 0 0 ENSG00000095380|ENST00000210444|NANS;ENST00000480925.1_1_9:100819090-100823312:+|nuORF;ENST00000495319.1_1_9:100819090-100837887:+|nuORF ENSG00000095380|ENST00000210444|NANS ENSG00000095380|ENST00000210444|NANS MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.811767578125 2 615.811313 1229.60807 1.0489 0.00064591 -0.34883 -0.00021481 0.70005 0.0004311 615.8109676846701 96.072 0.42594 89.897 89.678 90.104 -6.1757 77 25 4 0 0 0 0.015688 2 63741 63605;63741 79.596 46.151 1 130310000 55644 1651 37501 38326 64562;64563 64563 0.002453971604609251 RYAEIFQDL 9 Unmodified _RYAEIFQDL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7965087890625 2 577.795663 1153.57677 0.21352 0.00012337 0.92795 0.00053617 1.1415 0.00065954 577.7961351944718 65.382 0.33363 65.382 65.194 65.528 0 30 12 3 0 0 0 0.01958 1 36462 36462 63.961 34.879 1 4008900 55645 7270 37502 38327 64564 64564 0.006128241263922973 RYAEIFQDL 9 Unmodified _RYAEIFQDL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7970581054688 2 577.795663 1153.57677 0.10542 6.091E-05 -0.69896 -0.00040386 -0.59354 -0.00034295 577.7955366871752 65.775 0.30928 65.29 65.124 65.433 -0.48428 24 12 3 0 0 0 0.029718 1 35879 35879 55.503 19.376 1 6859000 55646 7270 37502 38327 64565 64565 0.006128241263922973 RYAEIVHLTL 10 Unmodified _RYAEIVHLTL_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.8480224609375 2 607.84823 1213.68191 0.26757 0.00016264 -0.51244 -0.00031148 -0.24487 -0.00014884 607.848055118663 58.398 0.27123 57.907 57.778 58.049 -0.49079 24 12 3 0 0 0 0.28276 1 31756 31756 28.495 9.1326 1 2557900 55647 5847 37503 38328 64566 64566 0.08361365322775782 RYAEIVHLTL 10 Unmodified _RYAEIVHLTL_ 0 0 0 ENSG00000147416|ENST00000276390|ATP6V1B2;ENST00000523482.5_1_8:20054917-20070443:+|nuORF ENSG00000147416|ENST00000276390|ATP6V1B2 ENSG00000147416|ENST00000276390|ATP6V1B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5680236816406 3 405.567912 1213.68191 0.28027 0.00011367 0.30502 0.00012371 0.5853 0.00023738 405.5678389642716 58.438 0.27123 57.948 57.778 58.049 -0.49079 28 12 3 0 0 0 0.14688 1 31773 31773 41.347 35.113 1 3628600 55648 5847 37503 38328 64567 64567 0.08361365322775782 RYAEWEERI 9 Unmodified _RYAEWEERI_ 0 0 0 nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.8758239746094 3 417.875405 1250.60439 0.27445 0.00011469 -0.014227 -5.9453E-06 0.26022 0.00010874 417.8754662765752 39.009 0.30384 39.009 38.811 39.115 0 38 13 4 0 0 0 0.01085 1 20839 20839 78.06 40.289 1 9629700 55649 1032 37504 38329 64568 64568 -0.010892726133761244 RYAEWEERI 9 Unmodified _RYAEWEERI_ 0 0 0 nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.3108520507812 2 626.309469 1250.60439 0.51469 0.00032235 -0.18658 -0.00011686 0.32811 0.0002055 626.3093988455872 38.992 0.23787 38.992 38.858 39.096 0 23 10 3 0 0 0 0.070983 1 20843 20843 42.312 20.776 1 4349600 55650 1032 37504 38329 64569 64569 -0.010892726133761244 RYAEWEERI 9 Unmodified _RYAEWEERI_ 0 0 0 nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3095703125 2 626.309469 1250.60439 0.49329 0.00030895 0.20829 0.00013045 0.70157 0.0004394 626.3095782205959 43.367 0.33136 38.602 38.477 38.808 -4.7648 37 22 2 0 0 0 0.03286 2 26309 26309;26477 57.108 28.613 1 30834000 55651 1032 37504 38329 64570;64571 64570 -0.010892726133761244 RYAEWEERI 9 Unmodified _RYAEWEERI_ 0 0 0 nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 MSMS AL20221201_MKP_PDAC_01 4 417.8755798339844 3 417.875405 1250.60439 NaN NaN NaN NaN NaN NaN NaN 43.472 1 38.708 38.208 39.208 -4.7648 0 0 0 0.061499 1 26415 26415 53.317 34.595 1 55652 1032 37504 38329 64572 64572 -0.010892726133761244 RYAGLYFCI 9 Carbamidomethyl (C) _RYAGLYFC(Carbamidomethyl (C))I_ RYAGLYFC(1)I RYAGLYFC(67)I 0 1 0 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7899169921875 2 581.789327 1161.5641 1.0347 0.00060196 0.047137 2.7424E-05 1.0818 0.00062938 581.7893014831952 93.934 0.68712 87.758 87.395 88.083 -6.1757 100 39 3 0 0 0 0.016184 1 62045 62045 67.344 22.937 1 83273000 55653 664 37505 38330 64573 64573 47 -0.010219105375426807 RYAIKILAI 9 Unmodified _RYAIKILAI_ 0 0 0 ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12 ENSG00000149292|ENST00000529221|TTC12 ENSG00000149292|ENST00000529221|TTC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8480834960938 2 530.847502 1059.68045 0.31861 0.00016913 -0.45391 -0.00024096 -0.1353 -7.1824E-05 530.8472226734935 60.285 0.2554 60.242 60.095 60.351 -0.04351 30 13 3 0 0 0 0.036857 1 32850 32850 57.471 3.8958 1 25403000 55654 5999 37506 38331 64574 64574 0.15299776024676248 RYAIKILAI 9 Unmodified _RYAIKILAI_ 0 0 0 ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12 ENSG00000149292|ENST00000529221|TTC12 ENSG00000149292|ENST00000529221|TTC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2345275878906 3 354.234093 1059.68045 0.20173 7.1461E-05 -0.90609 -0.00032097 -0.70436 -0.00024951 354.2336802880613 60.264 0.22346 60.211 60.118 60.341 -0.053062 16 11 2 0 0 0 0.062454 1 32883 32883 41.956 3.78 1 8394200 55655 5999 37506 38331 64575 64575 0.15299776024676248 RYAILTKATW 10 Unmodified _RYAILTKATW_ 0 0 0 ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2369995117188 3 408.236274 1221.68699 0.23115 9.4364E-05 1.2161 0.00049645 1.4472 0.00059082 408.2366223595415 47.919 0.28696 47.881 47.68 47.967 -0.038647 27 13 3 0 0 0 0.051223 1 25797 25797 42.835 24.114 1 2763100 55656 6523 37507 38332 64576 64576 0.08501669185397986 RYAILTKATW 10 Unmodified _RYAILTKATW_ 0 0 0 ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E ENSG00000157483|ENST00000288235|MYO1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.851806640625 2 611.850773 1221.68699 0.70826 0.00043335 0.016866 1.0319E-05 0.72513 0.00044367 611.8508719507568 47.927 0.20283 47.888 47.722 47.924 -0.038647 17 9 2 0 0 0 0.06987 1 25811 25811 53.404 29.383 1 1967000 55657 6523 37507 38332 64577 64577 0.08501669185397986 RYAITVWYF 9 Unmodified _RYAITVWYF_ 0 0 0 ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000135766|Q9GZT9-3|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1;ENSG00000135766|ENST00000366641|EGLN1;ENST00000593477.1_1_19:41313377-41313766:+|nuORF;nc|ENSG00000269858|Q96KS0-2|EGLN2;ENSG00000269858|ENST00000303961|EGLN2 ENST00000476717.1_1_1:231502159-231556008:-|nuORF;nc|ENSG00000269858|Q96KS0-2|EGLN2 nc|ENSG00000269858|Q96KS0-2|EGLN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.820556640625 2 609.818941 1217.62333 NaN NaN NaN NaN NaN NaN NaN 85.544 1 85.605 85.105 86.105 0.061638 0 0 0 0.25233 1 47353 47353 27.629 17.555 1 55658 4739;10881 37508 38333 64578 64578 0.023223087483074778 RYAKIVEIPF 10 Unmodified _RYAKIVEIPF_ 0 0 0 nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5765991210938 3 412.576408 1234.70739 0.13419 5.5364E-05 -0.16915 -6.9789E-05 -0.034964 -1.4425E-05 412.57659011163696 60.925 0.24282 60.882 60.765 61.008 -0.04351 28 11 3 0 0 0 0.47059 1 33259 33259 17.863 10.826 1 5164600 55659 6989 37509 38334 64579 64579 0.09942839845211893 RYAKLMEWL 9 Unmodified _RYAKLMEWL_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 ENSG00000090989|ENST00000381295|EXOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.326171875 2 605.326076 1208.6376 0.90281 0.00054649 0.04922 2.9794E-05 0.95203 0.00057629 605.3258099464962 96.474 0.16891 90.298 90.253 90.422 -6.1757 13 9 2 0 0 0 0.03568 1 63947 63947 52.268 23.187 1 17485000 55660 1574 37510 38335 64580 64580 0.0416263790496032 RYAKVPLF 8 Unmodified _RYAKVPLF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2980346679688 2 497.297645 992.580737 NaN NaN NaN NaN NaN NaN NaN 45.758 1 45.73 45.23 46.23 -0.028011 0 0 0 0.88073 1 24595 24595 19.439 0 1 55661 349 37511 38336 64581 64581 0.0841495841075357 RYALAPPG 8 Unmodified _RYALAPPG_ 0 0 0 REV__nc|ENSG00000177302|Q13472-2|TOP3A REV__nc|ENSG00000177302|Q13472-2|TOP3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.4714965820312 1 844.467564 843.460287 1.0847 0.00091597 -0.37812 -0.00031931 0.70654 0.00059665 844.4672023589853 53.605 0.66095 47.801 47.59 48.251 -5.8042 97 41 3 0 0 0 0.71616 1 33840 33840 15.768 1.1865 1 110390000 + 55662 22976 37512 38337 64582 64582 0.03229550417131577 RYALIMHKL 9 Oxidation (M) _RYALIM(Oxidation (M))HKL_ RYALIM(1)HKL RYALIM(46)HKL 0 0 1 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5584716796875 3 387.558471 1159.65358 0.1576 6.1078E-05 -0.48745 -0.00018891 -0.32985 -0.00012784 387.55835739733027 27.803 0.32227 27.833 27.662 27.985 0.029566 45 13 5 0 0 0 0.047714 1 14486 14486 45.74 36.196 1 115480000 55663 937 37513 38338 64583 64583 145 0.08014344141861329 RYALIMHKL 9 Oxidation (M) _RYALIM(Oxidation (M))HKL_ RYALIM(1)HKL RYALIM(70)HKL 0 0 1 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5584106445312 3 387.558471 1159.65358 1.0439 0.00040459 -0.50887 -0.00019722 0.53507 0.00020737 387.55832299646113 31.424 0.33706 27.728 27.507 27.844 -3.6958 25 18 2 0 0 0 0.013609 1 17828 17828 70.332 45.341 1 58544000 55664 937 37513 38338 64584 64584 145 0.08014344141861329 RYALIMHKL 9 Unmodified _RYALIMHKL_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.2267456054688 3 382.226833 1143.65867 -0.1647 -6.2952E-05 -0.36281 -0.00013868 -0.52751 -0.00020163 382.22685108536837 35.913 0.20706 35.938 35.826 36.033 0.024967 23 9 3 0 0 0 0.039985 1 18985 18985 38.615 31.138 1 9492000 55665 937 37513 38339 64585 64585 0.09258648004492898 RYALIMHKL 9 Unmodified _RYALIMHKL_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2275390625 3 382.226833 1143.65867 1.4815 0.00056628 -0.97808 -0.00037385 0.50344 0.00019243 382.2266739222741 81.416 1.3166 75.24 74.566 75.883 -6.1757 230 74 4 0 0 0 0.009483 3 53430 53430;53558;53748 65.474 46.112 1 29997000 55666 937 37513 38339 64586;64587;64588 64586 0.09258648004492898 RYALIMHKL 9 Unmodified _RYALIMHKL_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MSMS AL20221201_MKP_PDAC_01 4 382.2271118164062 3 382.226833 1143.65867 NaN NaN NaN NaN NaN NaN NaN 80.86 1 74.684 74.184 75.184 -6.1757 0 0 0 0.083082 1 53053 53053 37.075 22.669 1 55667 937 37513 38339 64589 64589 0.09258648004492898 RYALIMHKL 9 Unmodified _RYALIMHKL_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MSMS AL20221201_MKP_PDAC_01 4 382.2276916503906 3 382.226833 1143.65867 NaN NaN NaN NaN NaN NaN NaN 81.035 1 74.859 74.359 75.359 -6.1757 0 0 0 0.047623 1 53172 53172 53.404 24.909 1 55668 937 37513 38339 64590 64590 0.09258648004492898 RYALIMHKL 9 Unmodified _RYALIMHKL_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MSMS AL20221201_MKP_PDAC_01 4 382.2277221679688 3 382.226833 1143.65867 NaN NaN NaN NaN NaN NaN NaN 81.215 1 75.039 74.539 75.539 -6.1757 0 0 0 0.020219 1 53301 53301 70.332 41.837 1 55669 937 37513 38339 64591 64591 0.09258648004492898 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2918701171875 2 584.294973 1166.57539 -0.43777 -0.00025578 0.8057 0.00047076 0.36793 0.00021498 584.2954946368862 41.181 0.83198 41.181 40.919 41.751 0 68 44 2 0 0 0 0.044011 2 22488 22324;22488 47.749 13.136 1 6324500 55670 2759 37514 38340 64592;64593 64593 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2950439453125 2 584.294973 1166.57539 0.74541 0.00043554 0.058606 3.4243E-05 0.80401 0.00046978 584.295368189909 42.732 0.63175 42.732 42.238 42.87 0 53 31 3 0 0 0 0.044011 2 23076 22895;23076 47.749 23.728 1 4792100 55671 2759 37514 38340 64594;64595 64595 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2943725585938 2 584.294973 1166.57539 NaN NaN NaN NaN NaN NaN NaN 40.426 1 40.426 39.926 40.926 0 0 0 0 0.083082 1 21726 21726 47.749 11.622 1 55672 2759 37514 38340 64596 64596 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(42)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.29443359375 2 584.294973 1166.57539 NaN NaN NaN NaN NaN NaN NaN 43.229 1 43.229 42.729 43.729 0 0 0 0 0.10759 1 23466 23466 41.84 17.819 1 55673 2759 37514 38340 64597 64597 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2952270507812 2 584.294973 1166.57539 NaN NaN NaN NaN NaN NaN NaN 43.414 1 43.414 42.914 43.914 0 0 0 0 0.083082 1 23577 23577 47.749 23.728 1 55674 2759 37514 38340 64598 64598 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(56)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2947387695312 2 584.294973 1166.57539 -0.092185 -5.3863E-05 -0.82739 -0.00048344 -0.91958 -0.0005373 584.2946243541267 38.659 0.80689 38.372 38.154 38.961 -0.28687 131 37 6 0 0 0 0.028475 3 20271 20271;20373;20478 56.177 27.095 1 705900000 55675 2759 37514 38340 64599;64600;64601 64599 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2950439453125 2 584.294973 1166.57539 -0.1249 -7.2979E-05 -0.69442 -0.00040574 -0.81932 -0.00047872 584.2948600820314 41.472 0.71786 41.169 40.697 41.414 -0.30304 69 33 3 0 0 0 0.044011 1 21854 21854 47.749 23.728 1 6814500 55676 2759 37514 38340 64602 64602 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(48)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.295166015625 2 584.294973 1166.57539 0.43888 0.00025643 -0.72807 -0.00042541 -0.28919 -0.00016897 584.2946685875548 38.283 0.43181 38.3 38.09 38.522 0.017036 62 19 4 0 0 0 0.044011 2 20278 20278;20379 47.749 20.865 1 135430000 55677 2759 37514 38340 64603;64604 64603 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ RYALQM(1)EQL RYALQM(59)EQL 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7987060546875 2 584.294973 1166.57539 0.46637 0.0002725 1.6194 0.00094618 2.0857 0.0012187 584.2958369823904 45.016 0.81211 40.164 39.768 40.58 -4.852 101 59 3 0 0 0 0.024882 2 27369 27369;27509 58.679 20.705 1 16991000 55678 2759 37514 38340 64605;64606 64605 479 -0.0012313323402395326 RYALQMEQL 9 Oxidation (M) _RYALQM(Oxidation (M))EQL_ 0 0 1 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 584.294973 1166.57539 0.069961 4.0878E-05 -0.65619 -0.00038341 -0.58623 -0.00034253 584.2946795048006 43.197 0.5924 42.886 42.357 42.949 -0.31039 0.077168 -0.00060422 NaN 47.749 31 26 2 NaN NaN NaN NaN 0 NaN NaN 0 3886400 55679 2759 37514 38340 479 -0.0012313323402395326 RYALQMEQL 9 Unmodified _RYALQMEQL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2969970703125 2 576.297516 1150.58048 0.031112 1.793E-05 -1.0456 -0.0006026 -1.0145 -0.00058467 576.2969963629673 51.92 0.46524 51.92 51.71 52.175 0 84 20 6 0 0 0 0.028475 2 28762 28645;28762 56.177 25.541 1 593130000 55680 2759 37514 38341 64607;64608 64608 0.011211706285848777 RYALQMEQL 9 Unmodified _RYALQMEQL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2978515625 2 576.297516 1150.58048 0.63399 0.00036536 -1.0481 -0.00060404 -0.41415 -0.00023867 576.2969798967706 52.444 0.54992 52.01 51.709 52.259 -0.43367 118 27 8 0 0 0 0.028475 2 28266 28266;28369 56.177 23.872 1 570690000 55681 2759 37514 38341 64609;64610 64609 0.011211706285848777 RYALQMEQL 9 Unmodified _RYALQMEQL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2985229492188 2 576.297516 1150.58048 0.6479 0.00037338 -0.47656 -0.00027464 0.17135 9.8747E-05 576.29740773857 52.138 0.41557 52.079 51.814 52.229 -0.058918 70 19 6 0 0 0 0.014417 2 28192 28192;28298 69.105 20.705 1 48993000 55682 2759 37514 38341 64611;64612 64611 0.011211706285848777 RYALQMEQL 9 Unmodified _RYALQMEQL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.29736328125 2 576.297516 1150.58048 0.43488 0.00025062 -0.95355 -0.00054953 -0.51867 -0.00029891 576.2969560359295 57.937 1.5435 51.909 51.552 53.095 -6.0275 362 85 6 0 0 0 0.018301 7 37020 36895;37020;37160;37290;37407;37528;37654 65.235 27.261 1 8988300000 55683 2759 37514 38341 64613;64614;64615;64616;64617;64618;64619 64614 0.011211706285848777 RYALQVWRL 9 Unmodified _RYALQVWRL_ 0 0 0 ENSG00000106246|ENST00000292478|PTCD1 ENSG00000106246|ENST00000292478|PTCD1 ENSG00000106246|ENST00000292478|PTCD1 MSMS AL20221201_MKP_PDAC_01 4 402.2360534667969 3 402.236497 1203.68766 NaN NaN NaN NaN NaN NaN NaN 91.902 1 85.726 85.226 86.226 -6.1757 0 0 0 0.26013 1 60758 60758 27.223 16.424 1 55684 2407 37515 38342 64620 64620 0.09396508625127353 RYAMTVWYF 9 Unmodified _RYAMTVWYF_ 0 0 0 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 MSMS AL20221201_MKP_PDAC_01 4 618.798828125 2 618.797152 1235.57975 NaN NaN NaN NaN NaN NaN NaN 98.401 1 92.226 91.726 92.726 -6.1757 0 0 0 0.083082 1 65265 65265 47.749 23.728 1 55685 4147 37516 38343 64621 64621 -0.028616240204655696 RYAPTEKGLH 10 Unmodified _RYAPTEKGLH_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2120361328125 3 391.212128 1170.61456 -0.50843 -0.0001989 0.46736 0.00018284 -0.041063 -1.6064E-05 391.2123010634547 19.574 0.13205 19.574 19.496 19.628 0 41 19 3 0 0 0 0.66569 1 9783 9783 3.5871 0.26742 1 1041000 55686 4073 37517 38344 64622 64622 0.036073351118375285 RYAQNVAFF 9 Unmodified _RYAQNVAFF_ 0 0 0 ENSG00000169740|ENST00000374433|ZNF32 ENSG00000169740|ENST00000374433|ZNF32 ENSG00000169740|ENST00000374433|ZNF32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7864990234375 2 558.285266 1114.55598 0.0024168 1.3492E-06 0.74375 0.00041523 0.74617 0.00041658 558.2856588453194 55.787 0.2639 55.718 55.588 55.852 -0.068737 30 13 3 0 0 0 0.031062 1 30310 30310 54.774 26.287 1 10952000 55687 7910 37518 38345 64623 64623 0.003282785373585284 RYAQTPAHI 9 Unmodified _RYAQTPAHI_ 0 0 0 ENST00000460846.1_1_13:111557570-111567134:-|nuORF;nc|ENSG00000088448|Q9NXR5-2|ANKRD10;ENSG00000088448|ENST00000267339|ANKRD10 ENST00000460846.1_1_13:111557570-111567134:-|nuORF ENST00000460846.1_1_13:111557570-111567134:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7835693359375 2 528.78289 1055.55123 0.24832 0.00013131 2.7322 0.0014447 2.9805 0.001576 528.7840810938379 24.101 0.23207 21.273 21.142 21.374 -2.8273 19 12 2 0 0 0 0.10734 1 13080 13080 32.305 0.18852 1 3807200 55688 1490 37519 38346 64624 64624 0.025673943945776045 RYASINAHL 9 Unmodified _RYASINAHL_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;ENSG00000180138|ENST00000379800|CSNK1A1L nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7830810546875 2 522.78289 1043.55123 0.42606 0.00022274 1.3296 0.00069511 1.7557 0.00091785 522.7827634071896 31.263 0.26546 31.263 31.132 31.398 0 43 12 5 0 0 0 0.05447 1 16270 16270 43.858 0 1 8590100 55689 2991 37520 38347 64625 64625 0.031193943946163927 RYASINAHL 9 Unmodified _RYASINAHL_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;ENSG00000180138|ENST00000379800|CSNK1A1L nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.783447265625 2 522.78289 1043.55123 0.18005 9.4129E-05 0.31154 0.00016287 0.49159 0.00025699 522.7830566711095 31.251 0.247 31.148 31.013 31.26 -0.10269 31 9 5 0 0 0 0.029718 1 16212 16212 55.503 3.2344 1 30963000 55690 2991 37520 38347 64626 64626 0.031193943946163927 RYASINAHL 9 Unmodified _RYASINAHL_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;ENSG00000180138|ENST00000379800|CSNK1A1L nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.783447265625 2 522.78289 1043.55123 1.0662 0.00055741 -0.0042125 -2.2022E-06 1.062 0.00055521 522.7828734102172 34.965 0.52333 30.87 30.581 31.105 -4.0951 94 30 4 0 0 0 0.044296 1 20220 20220 47.594 3.7361 1 228460000 55691 2991 37520 38347 64627 64627 0.031193943946163927 RYASINAHL 9 Unmodified _RYASINAHL_ 0 0 0 nc|ENSG00000113712|P48729-3|CSNK1A1;ENSG00000113712|ENST00000377843|CSNK1A1;nc|ENSG00000113712|P48729-2|CSNK1A1;ENST00000606299.1_1_5:148886668-148892751:-|nuORF;ENSG00000180138|ENST00000379800|CSNK1A1L nc|ENSG00000113712|P48729-3|CSNK1A1 nc|ENSG00000113712|P48729-3|CSNK1A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.78289 1043.55123 -0.23357 -0.00012211 0.15508 8.1075E-05 -0.078487 -4.1032E-05 522.7830795725648 31.07 0.24884 31.1 30.925 31.174 0.030104 0.0045915 -2.6305E-05 NaN 55.503 26 10 4 NaN NaN NaN NaN 0 NaN NaN 0 6504600 55692 2991 37520 38347 0.031193943946163927 RYASINTHL 9 Unmodified _RYASINTHL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7901611328125 2 537.788173 1073.56179 -0.37315 -0.00020068 0.6315 0.00033961 0.25835 0.00013894 537.7888059808284 29.826 0.24765 29.826 29.662 29.909 0 36 14 4 0 0 0 0.21643 1 15449 15449 21.537 1.0834 1 30155000 55693 5349 37521 38348 64628 64628 0.027953770490512397 RYASINTHL 9 Unmodified _RYASINTHL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7891235351562 2 537.788173 1073.56179 0.54055 0.0002907 -0.10823 -5.8203E-05 0.43232 0.0002325 537.7881290986489 29.786 0.2401 29.705 29.601 29.841 -0.080429 32 11 4 0 0 0 0.078314 1 15425 15425 38.176 11.292 1 66495000 55694 5349 37521 38348 64629 64629 0.027953770490512397 RYASINTHL 9 Unmodified _RYASINTHL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7877197265625 2 537.788173 1073.56179 0.01607 8.6423E-06 0.82472 0.00044353 0.84079 0.00045217 537.7886036183821 29.613 0.18739 29.643 29.547 29.734 0.030106 23 8 3 0 0 0 0.044296 1 15454 15454 47.594 11.55 1 21296000 55695 5349 37521 38348 64630 64630 0.027953770490512397 RYASINTHL 9 Unmodified _RYASINTHL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7885131835938 2 537.788173 1073.56179 0.66587 0.0003581 -0.32498 -0.00017477 0.34089 0.00018333 537.7879335614879 33.238 0.46352 29.376 29.166 29.63 -3.8622 99 28 5 0 0 0 0.069655 2 19074 18949;19074 40.239 7.9337 1 525030000 55696 5349 37521 38348 64631;64632 64632 0.027953770490512397 RYASINTHL 9 Unmodified _RYASINTHL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENSG00000213923|ENST00000396832|CSNK1E ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8617248535156 3 358.861207 1073.56179 1.4605 0.00052412 -0.27565 -9.8921E-05 1.1849 0.0004252 358.86108768416017 33.243 0.38663 29.355 29.179 29.566 -3.8883 65 23 4 0 0 0 0.025842 2 19096 18977;19096 46.022 20.722 1 137870000 55697 5349 37521 38348 64633;64634 64634 0.027953770490512397 RYASTPQKF 9 Unmodified _RYASTPQKF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2910766601562 2 549.290548 1096.56654 -0.40318 -0.00022146 0.22782 0.00012514 -0.17536 -9.6325E-05 549.2905936233753 20.369 0.2227 20.398 20.264 20.486 0.028357 31 12 3 0 0 0 0.14 1 10276 10276 29.082 10.935 1 3231200 55698 16348 37522 38349 64635 64635 0.022122611917893664 RYASTPQKF 9 Unmodified _RYASTPQKF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.529296875 3 366.529458 1096.56654 NaN NaN NaN NaN NaN NaN NaN 20.395 1 20.423 19.923 20.923 0.028357 0 0 0 0.56093 1 10321 10321 9.544 5.9569 1 55699 16348 37522 38349 64636 64636 0.022122611917893664 RYASTPQKF 9 Unmodified _RYASTPQKF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7925415039062 2 549.290548 1096.56654 0.20753 0.000114 -0.29132 -0.00016002 -0.083783 -4.6021E-05 549.2904254462921 22.854 0.34503 20.076 19.872 20.217 -2.7784 67 25 3 0 0 0 0.025842 2 12220 12220;12337 57.722 21.101 1 26722000 55700 16348 37522 38349 64637;64638 64637 0.022122611917893664 RYASTPQKF 9 Unmodified _RYASTPQKF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8619689941406 3 366.529458 1096.56654 0.8924 0.00032709 -1.1685 -0.0004283 -0.27614 -0.00010121 366.52938538599005 22.869 0.33099 20.09 19.872 20.203 -2.7784 39 24 2 0 0 0 0.06294 2 12267 12267;12384 32.037 22.273 1 9648500 55701 16348 37522 38349 64639;64640 64639 0.022122611917893664 RYASYNAHL 9 Unmodified _RYASYNAHL_ 0 0 0 REV__nc|ENSG00000002746|Q76N89-2|HECW1 REV__nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8418273925781 3 365.51744 1093.53049 1.1578 0.00042319 -0.82834 -0.00030277 0.32945 0.00012042 365.51729110746254 27.033 0.46336 23.997 23.755 24.219 -3.0365 114 23 7 0 0 0 0.48152 1 14899 14899 5.2969 0.76802 1 350790000 + 55702 16936 37523 38350 64641 64641 -0.01253195985077582 RYATQLQQI 9 Unmodified _RYATQLQQI_ 0 0 0 CON__A2A4G1 CON__A2A4G1 CON__A2A4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8108520507812 2 560.809105 1119.60366 0.3212 0.00018013 -0.84686 -0.00047492 -0.52566 -0.00029479 560.8087010992507 37.399 0.16693 37.399 37.277 37.444 0 14 8 2 0 0 0 0.05483 1 19884 19884 43.772 5.7984 1 3481200 + 55703 135 37524 38351 64642 64642 0.04863932737566756 RYATQLQQI 9 Unmodified _RYATQLQQI_ 0 0 0 CON__A2A4G1 CON__A2A4G1 CON__A2A4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8101806640625 2 560.809105 1119.60366 0.1232 6.9094E-05 0.078081 4.3789E-05 0.20129 0.00011288 560.809132815241 37.671 0.18295 37.4 37.279 37.462 -0.27133 17 7 3 0 0 0 0.0090524 1 19801 19801 85.642 39.621 1 5265600 + 55704 135 37524 38351 64643 64643 0.04863932737566756 RYATSFYF 8 Unmodified _RYATSFYF_ 0 0 0 ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7526245117188 2 527.753267 1053.49198 0.40352 0.00021296 0.42175 0.00022258 0.82527 0.00043554 527.7535586511536 59.076 0.22533 59.015 58.86 59.085 -0.060722 20 10 2 0 0 0 0.64853 1 32163 32163 21.747 3.6117 1 1391600 55705 2531 37525 38352 64644 64644 -0.03262501619587965 RYAVEILTW 9 Unmodified _RYAVEILTW_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8169555664062 2 575.816399 1149.61824 0.48051 0.00027668 0.52738 0.00030368 1.0079 0.00058036 575.8166209648106 76.056 0.48919 75.576 75.369 75.858 -0.47945 65 20 4 0 0 0 0.020973 2 41666 41566;41666 62.573 31.936 1 13748000 55706 550 37526 38353 64645;64646 64646 0.04942004885697315 RYAVEILTW 9 Unmodified _RYAVEILTW_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8169555664062 2 575.816399 1149.61824 0.37304 0.0002148 1.1822 0.00068072 1.5552 0.00089552 575.8171040953151 75.498 0.54005 75.546 75.348 75.888 0.047707 83 24 5 0 0 0 0.020973 2 41701 41596;41701 62.573 37.173 1 65809000 55707 550 37526 38353 64647;64648 64648 0.04942004885697315 RYAVEILTW 9 Unmodified _RYAVEILTW_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.81689453125 2 575.816399 1149.61824 1.3414 0.00077239 0.061188 3.5233E-05 1.4026 0.00080762 575.8163385207599 95.928 0.39162 89.752 89.569 89.96 -6.1757 77 23 5 0 0 0 0.044011 2 63465 63465;63590 47.749 21.481 1 400700000 55708 550 37526 38353 64649;64650 64649 0.04942004885697315 RYAVFNEDGSL 11 Unmodified _RYAVFNEDGSL_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.8070678710938 2 635.806759 1269.59897 0.48667 0.00030943 0.026334 1.6743E-05 0.513 0.00032617 635.8065267215622 49.618 0.22896 49.618 49.487 49.716 0 16 9 2 0 0 0 0.16638 1 27335 27335 49.527 21.898 1 4517700 55709 8655 37527 38354 64651 64651 -0.02504996195852982 RYAVFNEDGSL 11 Unmodified _RYAVFNEDGSL_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3087768554688 2 635.806759 1269.59897 0.52128 0.00033144 0.079177 5.0341E-05 0.60046 0.00038178 635.8064713314768 50.055 0.18182 49.662 49.55 49.732 -0.3923 18 8 3 0 0 0 0.25257 1 26951 26951 35.612 12.954 1 1805000 55710 8655 37527 38354 64652 64652 -0.02504996195852982 RYAVIGADL 9 Unmodified _RYAVIGADL_ 0 0 0 ENST00000572869.1_1_16:25162908-25186269:+|nuORF;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1 ENST00000572869.1_1_16:25162908-25186269:+|nuORF ENST00000572869.1_1_16:25162908-25186269:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2738952636719 2 489.274367 976.53418 0.2225 0.00010886 0.59315 0.00029021 0.81565 0.00039908 489.27453059798086 50.458 0.32064 50.458 50.282 50.603 0 37 14 4 0 0 0 0.018301 2 27768 27768;27874 65.235 6.5562 1 11791000 55711 10373 37528 38355 64653;64654 64653 0.04497473788796924 RYAVIGADL 9 Unmodified _RYAVIGADL_ 0 0 0 ENST00000572869.1_1_16:25162908-25186269:+|nuORF;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1 ENST00000572869.1_1_16:25162908-25186269:+|nuORF ENST00000572869.1_1_16:25162908-25186269:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2459106445312 2 489.274367 976.53418 0.66925 0.00032745 -0.60581 -0.00029641 0.063435 3.1037E-05 489.27416690227267 50.869 0.29906 50.455 50.298 50.597 -0.41351 23 14 2 0 0 0 0.16895 1 27366 27366 24.021 2.2739 1 3456700 55712 10373 37528 38355 64655 64655 0.04497473788796924 RYAVIGADL 9 Unmodified _RYAVIGADL_ 0 0 0 ENST00000572869.1_1_16:25162908-25186269:+|nuORF;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1 ENST00000572869.1_1_16:25162908-25186269:+|nuORF ENST00000572869.1_1_16:25162908-25186269:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2745361328125 2 489.274367 976.53418 0.48941 0.00023946 -0.32168 -0.00015739 0.16773 8.2068E-05 489.27427338432244 56.752 0.36205 50.775 50.561 50.923 -5.9769 33 20 2 0 0 0 0.015445 1 36240 36240 68.081 13.307 1 27795000 55713 10373 37528 38355 64656 64656 0.04497473788796924 RYAVVLNATW 10 Unmodified _RYAVVLNATW_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8280029296875 2 596.827298 1191.64004 0.19554 0.0001167 0.58739 0.00035057 0.78293 0.00046727 596.8275774008368 63.009 1.1179 62.987 62.771 63.889 -0.021614 116 55 4 0 0 0 0.0055438 3 34387 34387;34496;34628 92.491 58.09 1 62752000 55714 1685 37529 38356 64657;64658;64659 64657 0.05188809634273639 RYAVYWDEL 9 Unmodified _RYAVYWDEL_ 0 0 0 ENSG00000085788|ENST00000397166|DDHD2;ENST00000526370.1_1_8:38089361-38092027:+|nuORF;ENST00000519857.5_1_8:38089361-38095786:+|nuORF ENSG00000085788|ENST00000397166|DDHD2 ENSG00000085788|ENST00000397166|DDHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.7965087890625 2 607.795663 1213.57677 0.037051 2.2519E-05 1.0701 0.00065038 1.1071 0.0006729 607.7967476895266 66.05 0.2368 66.05 65.938 66.175 0 15 11 2 0 0 0 0.28023 1 36829 36829 18.146 7.3224 1 1046100 55715 1418 37530 38357 64660 64660 -0.021471758736424817 RYAVYWDEL 9 Unmodified _RYAVYWDEL_ 0 0 0 ENSG00000085788|ENST00000397166|DDHD2;ENST00000526370.1_1_8:38089361-38092027:+|nuORF;ENST00000519857.5_1_8:38089361-38095786:+|nuORF ENSG00000085788|ENST00000397166|DDHD2 ENSG00000085788|ENST00000397166|DDHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.7965087890625 2 607.795663 1213.57677 0.19821 0.00012047 0.84085 0.00051107 1.0391 0.00063154 607.7962702149733 66.558 0.2919 66.075 65.902 66.194 -0.48324 23 13 2 0 0 0 0.30202 1 36323 36323 17.113 9.8237 1 1925500 55716 1418 37530 38357 64661 64661 -0.021471758736424817 RYAWRKRWFVL 11 Unmodified _RYAWRKRWFVL_ 0 0 0 nc|ENSG00000160219|Q8WWW8-3|GAB3;nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3 nc|ENSG00000160219|Q8WWW8-3|GAB3 nc|ENSG00000160219|Q8WWW8-3|GAB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9806823730469 4 395.979482 1579.88882 1.2384 0.00049038 0.80421 0.00031845 2.0426 0.00080884 395.97986353426336 19.652 0.22298 16.996 16.926 17.149 -2.6564 26 14 3 0 0 0 0.73237 1 10441 10441 1.2148 0 1 3798300 55717 6705 37531 38358 64662 64662 0.12207197661609825 RYCANAFKL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))ANAFKL_ RYC(1)ANAFKL RYC(52)ANAFKL 0 1 0 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7911987304688 2 571.792401 1141.57025 NaN NaN NaN NaN NaN NaN NaN 38.664 1 38.676 38.176 39.176 0.011452 0 0 0 0.065563 1 20569 20569 52.268 16.224 1 55718 7151 37532 38359 64663 64663 699 0.0051260769398595585 RYCANAFKL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))ANAFKL_ RYC(1)ANAFKL RYC(68)ANAFKL 0 1 0 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7928466796875 2 571.792401 1141.57025 1.1318 0.00064715 0.40062 0.00022907 1.5324 0.00087622 571.7928120176817 42.491 0.36363 37.807 37.678 38.041 -4.6846 54 24 3 0 0 0 0.015445 1 25754 25754 68.081 21.16 1 32800000 55719 7151 37532 38359 64664 64664 699 0.0051260769398595585 RYCAQDAF 8 Unmodified _RYCAQDAF_ 0 0 0 ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENSG00000104823|ENST00000221418|ECH1;ENST00000600178.5_1_19:39307593-39308076:-|nuORF ENST00000598707.5_1_19:39306922-39322412:-|nuORF ENST00000598707.5_1_19:39306922-39322412:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2140502929688 2 487.213452 972.412351 NaN NaN NaN NaN NaN NaN NaN 49.961 1 49.569 49.069 50.069 -0.3923 0 0 0 0.97348 1 26887 26887 5.7604 0 1 55720 2239 37533 38360 64665 64665 -0.0749589156522461 RYCARPLKSS 10 Unmodified _RYCARPLKSS_ 0 0 0 REV__ENST00000487177.5_1_1:1019836-1022648:-|nuORF REV__ENST00000487177.5_1_1:1019836-1022648:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.2144470214844 3 394.213364 1179.61826 NaN NaN NaN NaN NaN NaN NaN 45.931 1 40.976 40.476 41.476 -4.9549 0 0 0 0.85122 1 28285 28285 8.9762 0 1 + 55721 19801 37534 38361 64666 64666 0.03563681614059533 RYCEGHFSL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))EGHFSL_ RYC(1)EGHFSL RYC(64)EGHFSL 0 1 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10;ENST00000541178.1_1_12:34175516-34175777:+|nuORF;ENST00000553138.1_1_12:38710662-38710941:+|nuORF ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7650146484375 2 584.76384 1167.51313 0.22185 0.00012973 -0.47557 -0.0002781 -0.25373 -0.00014837 584.764032959015 39.879 0.34101 35.349 35.155 35.496 -4.5294 46 23 3 0 0 0 0.01958 2 23779 23644;23779 63.961 33.324 1 36425000 55722 5126 37535 38362 64667;64668 64668 525 -0.06392859582365418 RYCFQITSF 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))FQITSF_ RYC(1)FQITSF RYC(72)FQITSF 0 1 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2896118164062 2 611.289691 1220.56483 0.68875 0.00042103 0.6192 0.00037851 1.308 0.00079954 611.2902504617911 77.696 0.69552 71.52 70.989 71.684 -6.1757 56 40 2 0 0 0 0.013041 2 50943 50811;50943 71.922 28.064 1 11935000 55723 6524 37536 38363 64669;64670 64670 643 -0.03663115888480206 RYCFQITSF 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))FQITSF_ RYC(1)FQITSF RYC(65)FQITSF 0 1 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2894287109375 2 611.289691 1220.56483 0.69692 0.00042602 -2.6463 -0.0016177 -1.9494 -0.0011917 611.2880986785559 78.014 0.30543 71.838 71.668 71.973 -6.1757 31 16 2 0 0 0 0.018301 1 51065 51065 65.235 29.108 1 19960000 55724 6524 37536 38363 64671 64671 643 -0.03663115888480206 RYCFQITSF 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))FQITSF_ RYC(1)FQITSF RYC(48)FQITSF 0 1 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2893676757812 2 611.289691 1220.56483 0.35747 0.00021852 0.91267 0.00055791 1.2701 0.00077643 611.791338573334 78.646 0.5714 72.471 72.238 72.809 -6.1757 50 34 2 0 0 0 0.044011 2 51540 51540;51699 47.749 18.667 1 17833000 55725 6524 37536 38363 64672;64673 64672 643 -0.03663115888480206 RYCFQITSF 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))FQITSF_ RYC(1)FQITSF RYC(65)FQITSF 0 1 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 611.2896728515625 2 611.289691 1220.56483 NaN NaN NaN NaN NaN NaN NaN 78.269 1 72.094 71.594 72.594 -6.1757 0 0 0 0.032808 1 51225 51225 65.235 29.108 1 55726 6524 37536 38363 64674 64674 643 -0.03663115888480206 RYCFQITSF 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))FQITSF_ RYC(1)FQITSF RYC(56)FQITSF 0 1 0 ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1 ENST00000482800.5_1_3:57261911-57301862:+|nuORF ENST00000482800.5_1_3:57261911-57301862:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 611.290771484375 2 611.289691 1220.56483 NaN NaN NaN NaN NaN NaN NaN 78.517 1 72.341 71.841 72.841 -6.1757 0 0 0 0.053277 1 51397 51397 56.177 20.05 1 55727 6524 37536 38363 64675 64675 643 -0.03663115888480206 RYCKLYEHL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))KLYEHL_ RYC(1)KLYEHL RYC(110)KLYEHL 0 1 0 ENST00000515773.5_1_6:43164260-43192180:+|nuORF;nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9 ENST00000515773.5_1_6:43164260-43192180:+|nuORF ENST00000515773.5_1_6:43164260-43192180:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.8856506347656 3 427.885135 1280.63358 0.70189 0.00030033 0.012404 5.3075E-06 0.71429 0.00030563 427.88505611430287 30.001 0.28259 26.504 26.349 26.631 -3.497 30 13 4 0 0 0 0.0061279 2 16851 16851;16975 114.19 89.305 1 47374000 55728 2907 37537 38364 64676;64677 64676 298 0.004485484112365157 RYCQCNNGVF 10 2 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))QC(Carbamidomethyl (C))NNGVF_ RYC(1)QC(1)NNGVF RYC(56)QC(56)NNGVF 0 2 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1 nc|ENSG00000108669|Q15438-3|CYTH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.2779541015625 2 659.276789 1316.53902 0.83456 0.0005502 -0.33756 -0.00022254 0.497 0.00032766 659.2768312044572 34.191 0.32125 30.206 30.002 30.323 -3.9853 42 17 3 0 0 0 0.0575 2 19627 19627;19759 56.177 35.763 1 18510000 55729 2595 37538 38365 64678;64679 64678 263;264 -0.10658333402398057 RYCSELRSL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))SELRSL_ RYC(1)SELRSL RYC(43)SELRSL 0 1 0 ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;DCTN4|p.N57Kfs*6|1|0.08|ENSG00000132912|chr5:150756452-150756453|-/T|frameshift_variant ENSG00000132912|ENST00000447998|DCTN4 ENSG00000132912|ENST00000447998|DCTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2009582519531 3 395.201124 1182.58154 0.91393 0.00036119 -1.0648 -0.00042081 -0.15088 -5.9628E-05 395.20059801059836 33.23 0.2907 29.374 29.224 29.515 -3.8562 26 17 2 0 0 0 0.058763 1 19017 19017 42.835 24.114 1 13489000 55730 4464 37539 38366 64680 64680 461 -0.0024461500252073165 RYCSYSDTF 9 Unmodified _RYCSYSDTF_ 0 0 0 REV__ADCYAP1|p.R143C|1|0.04|ENSG00000141433|chr18:909531-909531|C/T|missense_variant REV__ADCYAP1|p.R143C|1|0.04|ENSG00000141433|chr18:909531-909531|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.159423828125 3 381.158813 1140.45461 -0.32886 -0.00012535 1.8043 0.00068771 1.4754 0.00056236 381.15959990223865 53.674 0.2711 53.611 53.576 53.847 -0.063423 22 18 2 0 0 0 0.55144 1 29127 29127 2.4985 0 1 7303900 + 55731 16702 37540 38367 64681 64681 -0.10999960947515319 RYCTVRCL 8 2 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))TVRC(Carbamidomethyl (C))L_ RYC(1)TVRC(1)L RYC(52)TVRC(52)L 0 2 0 ENSG00000106400|ENST00000305105|ZNHIT1;ENST00000485387.1_1_7:100865814-100867236:+|nuORF;ENST00000492315.5_1_7:100864992-100867236:+|nuORF ENSG00000106400|ENST00000305105|ZNHIT1 ENSG00000106400|ENST00000305105|ZNHIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5194396972656 3 376.519799 1126.53757 0.85388 0.0003215 -0.048075 -1.8101E-05 0.80581 0.0003034 376.5198902311397 26.389 0.31635 23.438 23.281 23.597 -2.9511 36 16 3 0 0 0 0.33377 1 14509 14509 51.63 20.926 1 12836000 55732 2426 37541 38368 64682 64682 241;242 -0.020639227004949134 RYCTVRCL 8 2 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))TVRC(Carbamidomethyl (C))L_ RYC(1)TVRC(1)L RYC(52)TVRC(52)L 0 2 0 ENSG00000106400|ENST00000305105|ZNHIT1;ENST00000485387.1_1_7:100865814-100867236:+|nuORF;ENST00000492315.5_1_7:100864992-100867236:+|nuORF ENSG00000106400|ENST00000305105|ZNHIT1 ENSG00000106400|ENST00000305105|ZNHIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.276123046875 2 564.27606 1126.53757 0.52505 0.00029627 -0.021858 -1.2334E-05 0.50319 0.00028394 564.2759774883847 26.382 0.26064 23.431 23.281 23.542 -2.9511 24 13 2 0 0 0 0.33377 1 14516 14516 51.63 11.391 1 9470400 55733 2426 37541 38368 64683 64683 241;242 -0.020639227004949134 RYCVQLSQI 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))VQLSQI_ RYC(1)VQLSQI RYC(72)VQLSQI 0 1 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645;KRT17|p.E332D|1|0.23|ENSG00000128422|chr17:41620844-41620844|C/A|missense_variant;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10;CON__P02535-1 ENSG00000186395|ENST00000269576|KRT10 MSMS AL20221201_MKP_PDAC_01 4 583.8033447265625 2 583.802965 1165.59138 NaN NaN NaN NaN NaN NaN NaN 54.204 1 48.339 47.839 48.839 -5.8653 0 0 0 0.025332 1 34345 34345 71.922 7.9618 1 + 55734 169;158 37542 38369 64684 64684 3 0.015205730028583275 RYCYLPELL 9 Carbamidomethyl (C) _RYC(Carbamidomethyl (C))YLPELL_ RYC(1)YLPELL RYC(44)YLPELL 0 1 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.8160400390625 2 613.815541 1225.61653 0.93396 0.00057328 -0.1821 -0.00011178 0.75186 0.0004615 613.8154093424703 95.064 0.66852 88.889 88.372 89.04 -6.1757 107 37 5 0 0 0 0.05447 1 62919 62919 43.858 29.952 1 116530000 55735 8124 37543 38370 64685 64685 784 0.012746278054237337 RYDDMASAM 9 Unmodified _RYDDMASAM_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH;ENST00000479649.1_1_22:32340737-32341614:+|nuORF ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2161865234375 2 530.215334 1058.41612 1.2214 0.00064761 -0.57113 -0.00030282 0.65028 0.00034479 530.2151240963852 37.334 0.2183 33.051 32.938 33.156 -4.2835 19 12 2 0 0 0 0.091924 1 21900 21900 34.932 5.8505 1 5372700 55736 4050 37544 38371 64686 64686 -0.11075589853680867 RYDDMATCM 9 Carbamidomethyl (C),2 Oxidation (M) _RYDDM(Oxidation (M))ATC(Carbamidomethyl (C))M(Oxidation (M))_ RYDDMATC(1)M RYDDM(1)ATCM(1) RYDDMATC(56)M RYDDM(56)ATCM(56) 0 1 2 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.7156982421875 2 597.714841 1193.41513 -0.34014 -0.0002033 0.13825 8.2637E-05 -0.20188 -0.00012067 597.7148844141467 15.932 0.51248 13.375 13.107 13.619 -2.557 172 109 2 0 0 0 0.029718 1 8188 8188 55.503 40.921 1 5552800 55737 4588 37545 38372 64687 64687 471 834;835 -0.17384172284869237 RYDDMATCM 9 Carbamidomethyl (C),Oxidation (M) _RYDDMATC(Carbamidomethyl (C))M(Oxidation (M))_ RYDDMATC(1)M RYDDMATCM(1) RYDDMATC(100)M RYDDM(-90)ATCM(90) 0 1 1 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7177734375 2 589.717384 1177.42021 0.065129 3.8408E-05 -0.10925 -6.4425E-05 -0.044118 -2.6017E-05 589.7176937030563 23.546 0.36078 20.719 20.537 20.898 -2.8273 56 21 4 0 0 0 0.008513 2 12697 12697;12799 99.755 71.268 2 12742000 55738 4588 37545 38373 64688;64689 64688 471 834;835 -0.16139868422260406 RYDDMATCM 9 Carbamidomethyl (C),Oxidation (M) _RYDDM(Oxidation (M))ATC(Carbamidomethyl (C))M_ RYDDMATC(1)M RYDDM(1)ATCM RYDDMATC(52)M RYDDM(44)ATCM(-44) 0 1 1 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.716796875 2 589.717384 1177.42021 -0.094645 -5.5814E-05 -0.88346 -0.00052099 -0.97811 -0.00057681 589.7172775512595 25.169 0.27227 22.286 22.172 22.444 -2.8831 63 26 3 0 0 0 0.036857 1 13740 13740 51.63 33.495 2 19076000 55739 4588 37545 38373 64690 64690 471 834;835 -0.16139868422260406 RYDDMATCM 9 Carbamidomethyl (C),Oxidation (M) _RYDDM(Oxidation (M))ATC(Carbamidomethyl (C))M_ RYDDMATC(1)M RYDDM(1)ATCM RYDDMATC(44)M RYDDM(40)ATCM(-40) 0 1 1 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.717529296875 2 589.717384 1177.42021 -0.22877 -0.00013491 0.14886 8.7782E-05 -0.079912 -4.7126E-05 589.7178465863186 25.477 0.3033 22.594 22.444 22.748 -2.8831 43 16 3 0 0 0 0.05483 1 13978 13978 43.772 34.425 2 10062000 55740 4588 37545 38373 64691 64691 471 834;835 -0.16139868422260406 RYDDMATCM 9 Carbamidomethyl (C) _RYDDMATC(Carbamidomethyl (C))M_ RYDDMATC(1)M RYDDMATC(64)M 0 1 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7191162109375 2 581.719926 1161.4253 1.1905 0.00069253 -1.243 -0.00072308 -0.052513 -3.0548E-05 581.7195637850589 37.647 0.42035 33.279 33.11 33.531 -4.3689 66 25 3 0 0 0 0.01958 2 22045 22045;22166 63.961 50.054 1 37486000 55741 4588 37545 38374 64692;64693 64692 471 -0.14895564559651575 RYDEIKEEF 9 Unmodified _RYDEIKEEF_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20221201_MKP_PDAC_01 4 614.3389282226562 2 614.79586 1227.57717 NaN NaN NaN NaN NaN NaN NaN 40.337 1 35.808 35.308 36.308 -4.5294 0 0 0 0.076188 1 24075 24075 49.527 18.259 1 55742 3713 37546 38375 64694 64694 -0.027518009444293057 RYDEIKEEF 9 Unmodified _RYDEIKEEF_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20221201_MKP_PDAC_01 4 614.795654296875 2 614.79586 1227.57717 NaN NaN NaN NaN NaN NaN NaN 40.435 1 35.905 35.405 36.405 -4.5294 0 0 0 0.011453 1 24147 24147 90.135 23.678 1 55743 3713 37546 38375 64695 64695 -0.027518009444293057 RYDEIRRHW 9 Unmodified _RYDEIRRHW_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2306823730469 3 444.230294 1329.66905 -0.17919 -7.96E-05 0.086026 3.8215E-05 -0.09316 -4.1384E-05 444.2303973467322 22.431 0.32955 22.454 22.294 22.623 0.022896 47 14 5 0 0 0 0.02676 2 11378 11378;11479 57.108 50.006 1 34666000 55744 5914 37547 38376 64696;64697 64696 0.017403469832743212 RYDEIRRHW 9 Unmodified _RYDEIRRHW_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2309875488281 3 444.230294 1329.66905 0.47907 0.00021282 0.29607 0.00013153 0.77514 0.00034434 444.2306839608165 22.274 0.23271 22.291 22.16 22.393 0.017128 22 9 3 0 0 0 0.11005 1 11426 11426 32.037 24.56 1 11980000 55745 5914 37547 38376 64698 64698 0.017403469832743212 RYDEIRRHW 9 Unmodified _RYDEIRRHW_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000492798.1_1_9:136217794-136218218:+|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000468834.1_1_10:33346560-33347304:-|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2305297851562 3 444.230294 1329.66905 0.16066 7.1372E-05 -0.5111 -0.00022705 -0.35044 -0.00015568 444.2301754442622 25.164 0.45512 22.281 22.094 22.549 -2.8831 123 40 4 0 0 0 0.085786 2 13812 13694;13812 36.395 28.549 1 103190000 55746 5914 37547 38376 64699;64700 64700 0.017403469832743212 RYDEMVESM 9 2 Oxidation (M) _RYDEM(Oxidation (M))VESM(Oxidation (M))_ RYDEM(1)VESM(1) RYDEM(48)VESM(48) 0 0 2 ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.236572265625 2 596.236464 1190.45837 -0.57618 -0.00034354 -0.15234 -9.0829E-05 -0.72851 -0.00043437 596.2366557342128 17.759 0.56503 17.759 17.374 17.939 0 242 93 4 0 0 0 0.044296 1 8773 8773 47.594 26.057 1 3356600 55747 2621 37548 38377 64701 64701 452;453 -0.1292365923595753 RYDEMVESM 9 2 Oxidation (M) _RYDEM(Oxidation (M))VESM(Oxidation (M))_ RYDEM(1)VESM(1) RYDEM(48)VESM(48) 0 0 2 ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2359008789062 2 596.236464 1190.45837 0.54911 0.0003274 -0.73073 -0.00043568 -0.18161 -0.00010828 596.2363369329274 19.357 0.27783 16.7 16.546 16.824 -2.6564 45 22 3 0 0 0 0.044296 2 10296 10188;10296 47.594 19.966 1 8130700 55748 2621 37548 38377 64702;64703 64703 452;453 -0.1292365923595753 RYDEMVESM 9 Oxidation (M) _RYDEM(Oxidation (M))VESM_ RYDEM(1)VESM RYDEM(60)VESM(-60) 0 0 1 ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.23876953125 2 588.239006 1174.46346 0.46551 0.00027383 -0.22992 -0.00013525 0.23559 0.00013858 588.2387217246236 31.693 0.31153 27.997 27.844 28.156 -3.6958 18 16 2 0 0 0 0.013609 1 18001 18001 70.332 24.632 2 25699000 55749 2621 37548 38378 64704 64704 452;453 -0.11679355373348699 RYDEMVESM 9 Unmodified _RYDEMVESM_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2420043945312 2 580.241549 1158.46855 0.37969 0.00022031 0.25212 0.00014629 0.63182 0.00036661 580.2418764894653 45.343 0.51395 40.388 40.099 40.613 -4.9549 80 34 3 0 0 0 0.0084276 1 27880 27880 110.67 35.746 1 42655000 55750 2621 37548 38379 64705 64705 -0.10435051510739868 RYDFFVSRF 9 Unmodified _RYDFFVSRF_ 0 0 0 nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2377014160156 3 412.876857 1235.60874 0.10712 4.4225E-05 -0.33626 -0.00013884 -0.22915 -9.461E-05 412.8762901053193 61.87 0.13441 61.838 61.772 61.906 -0.032787 9 6 2 0 0 0 0.21647 1 33806 33806 4.7159 2.9736 1 2141900 55751 4384 37549 38380 64706 64706 0.00036236600158190413 RYDGQIAVF 9 Unmodified _RYDGQIAVF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7791748046875 2 534.777274 1067.53999 0.2847 0.00015225 0.77233 0.00041303 1.057 0.00056528 534.777676405517 53.028 0.38165 52.576 52.381 52.762 -0.45173 60 19 4 0 0 0 0.19361 1 28646 28646 23.79 4.5328 1 25166000 55752 9027 37550 38381 64707 64707 0.008925723004495012 RYDGQIAVF 9 Unmodified _RYDGQIAVF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7782592773438 2 534.777274 1067.53999 0.71693 0.0003834 0.10982 5.8727E-05 0.82675 0.00044213 534.7772110831111 52.634 0.30201 52.575 52.426 52.728 -0.058918 26 14 2 0 0 0 0.27545 1 28577 28577 18.373 1.4308 1 2290700 55753 9027 37550 38381 64708 64708 0.008925723004495012 RYDGQVAVF 9 Unmodified _RYDGQVAVF_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47062096-47065733:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.76953125 2 527.769448 1053.52434 0.56187 0.00029654 -0.33685 -0.00017778 0.22502 0.00011876 527.7692467304813 45.762 0.29296 45.762 45.625 45.918 0 46 14 4 0 0 0 0.13231 1 25002 25002 29.841 7.1043 1 59088000 55754 4284 37551 38382 64709 64709 -0.0002771421659417683 RYDGQVAVF 9 Unmodified _RYDGQVAVF_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1;ENST00000490869.1_1_X:47062096-47065733:+|nuORF nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7698364257812 2 527.769448 1053.52434 0.15687 8.2793E-05 0.41013 0.00021645 0.567 0.00029925 527.7697671722342 46.052 0.26968 45.715 45.57 45.84 -0.33664 31 13 3 0 0 0 0.13231 1 24667 24667 29.841 10.584 1 18763000 55755 4284 37551 38382 64710 64710 -0.0002771421659417683 RYDGSWTW 8 Unmodified _RYDGSWTW_ 0 0 0 ENSG00000205090|ENST00000378733|TMEM240 ENSG00000205090|ENST00000378733|TMEM240 ENSG00000205090|ENST00000378733|TMEM240 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2523193359375 2 535.738148 1069.46174 0.37045 0.00019846 -1.3184 -0.0007063 -0.94792 -0.00050784 535.7379116238224 69.214 0.40136 69.214 68.998 69.4 0 25 17 2 0 0 0 8.7369 1 38502 38502 5.7604 0 1 697280 55756 10347 37552 38383 64711 64711 -0.07020860284774244 RYDGWFNNL 9 Unmodified _RYDGWFNNL_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7767333984375 2 592.777805 1183.54106 0.42867 0.00025411 -1.6401 -0.00097222 -1.2114 -0.00071811 592.776591966932 67.168 0.27559 66.685 66.547 66.822 -0.48218 30 12 3 0 0 0 0.044296 1 36676 36676 47.594 16.326 1 4538100 55757 5216 37553 38384 64712 64712 -0.04337213330609302 RYDGWFNNL 9 Unmodified _RYDGWFNNL_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.7781982421875 2 592.777805 1183.54106 0.69052 0.00040933 -0.28678 -0.00017 0.40375 0.00023933 592.7778270327491 66.695 0.30927 66.705 66.519 66.829 0.0095673 30 14 3 0 0 0 0.012668 1 36596 36596 72.968 41.7 1 6686100 55758 5216 37553 38384 64713 64713 -0.04337213330609302 RYDLGGLVM 9 Unmodified _RYDLGGLVM_ 0 0 0 ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2687377929688 2 512.268227 1022.5219 0.72516 0.00037147 -0.27469 -0.00014072 0.45047 0.00023076 512.2684210517336 69.417 0.4199 63.241 62.923 63.343 -6.1757 43 22 3 0 0 0 0.085319 1 45261 45261 36.506 8.8774 1 31167000 55759 2143 37554 38385 64714 64714 0.011541140541226014 RYDLGGLVM 9 Unmodified _RYDLGGLVM_ 0 0 0 ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT ENSG00000103485|ENST00000395384|QPRT MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 512.268227 1022.5219 0.72516 0.00037147 -0.27469 -0.00014072 0.45047 0.00023076 512.2684210517336 69.417 0.4199 63.241 62.923 63.343 -6.1757 -0.011884 0.00023424 NaN 36.506 43 22 3 NaN NaN NaN NaN 0 NaN NaN 0 31167000 55760 2143 37554 38385 0.011541140541226014 RYDPFSNTW 9 Unmodified _RYDPFSNTW_ 0 0 0 ENSG00000149243|ENST00000539798|KLHL35;ENST00000460787.1_1_11:75133626-75136632:-|nuORF ENSG00000149243|ENST00000539798|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.22900390625 2 593.269813 1184.52507 0.59543 0.00035325 0.23032 0.00013664 0.82574 0.00048989 593.2703582189015 63.34 0.28169 57.164 57.056 57.338 -6.1757 29 16 2 0 0 0 0.10852 1 40868 40868 40.239 20.982 1 17078000 55761 5993 37555 38386 64715 64715 -0.0598091956751432 RYDPFSNTW 9 Unmodified _RYDPFSNTW_ 0 0 0 ENSG00000149243|ENST00000539798|KLHL35;ENST00000460787.1_1_11:75133626-75136632:-|nuORF ENSG00000149243|ENST00000539798|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 593.269813 1184.52507 0.52065 0.00030889 1.0759 0.0006383 1.5966 0.00094719 593.2708229049305 57.503 0.29597 57.013 56.75 57.046 -0.48974 -0.075751 0.00065865 NaN 40.239 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2083000 55762 5993 37555 38386 -0.0598091956751432 RYDPHLNRW 9 Unmodified _RYDPHLNRW_ 0 0 0 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 ENSG00000167487|ENST00000300976|KLHL26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5479125976562 3 419.547623 1255.62104 1.3316 0.00055868 1.0713 0.00044944 2.4029 0.0010081 419.5484096132827 32.418 0.53544 28.562 28.337 28.872 -3.8562 105 29 5 0 0 0 0.18255 1 18476 18476 24.882 14.354 1 42517000 55763 7615 37556 38387 64716 64716 0.0034527306320342177 RYDPIEEQI 9 Unmodified _RYDPIEEQI_ 0 0 0 REV__nc|ENSG00000141127|O60256-4|PRPSAP2 REV__nc|ENSG00000141127|O60256-4|PRPSAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1929016113281 3 388.196144 1161.5666 NaN NaN NaN NaN NaN NaN NaN 19.976 1 19.976 19.476 20.476 0 0 0 0 0.83049 1 10027 10027 2.2828 0.19677 1 + 55764 20519 37557 38388 64717 64717 -0.007717835988614752 RYDPQTNEW 9 Unmodified _RYDPQTNEW_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7693481445312 2 604.770177 1207.5258 -0.85995 -0.00052007 0.35116 0.00021237 -0.50879 -0.0003077 605.2719220631482 33.123 0.1952 33.123 33.008 33.203 0 20 9 3 0 0 0 0.091924 1 17351 17351 34.932 21.026 1 2316000 55765 1185 37558 38389 64718 64718 -0.06966124918471905 RYDPRHNRWF 10 Unmodified _RYDPRHNRWF_ 0 0 0 nc|ENSG00000099910|Q53GT1-3|KLHL22;ENSG00000099910|ENST00000328879|KLHL22;ENST00000487090.1_1_22:20810643-20819754:-|nuORF nc|ENSG00000099910|Q53GT1-3|KLHL22 nc|ENSG00000099910|Q53GT1-3|KLHL22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2433776855469 3 482.909443 1445.7065 NaN NaN NaN NaN NaN NaN NaN 29.584 1 29.584 29.084 30.084 0 0 0 0 0.96981 1 15330 15330 1.9064 0.45126 1 55766 1719 37559 38390 64719 64719 0.0014743824888228119 RYDSDMYI 8 Unmodified _RYDSDMYI_ 0 0 0 REV__ENSG00000141179|ENST00000268896|PCTP REV__ENSG00000141179|ENST00000268896|PCTP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.2680053710938 2 531.731674 1061.4488 0.66416 0.00035315 0.076643 4.0754E-05 0.7408 0.00039391 532.2317651377618 31.823 0.20463 28.127 28.066 28.271 -3.6958 16 10 2 0 0 0 8.7369 1 18154 18154 9.3474 0 1 7316100 + 55767 20520 37560 38391 64720 64720 -0.07947059459183947 RYDSVINRL 9 Unmodified _RYDSVINRL_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.315185546875 2 568.314554 1134.61456 NaN NaN NaN NaN NaN NaN NaN 39.926 1 39.629 39.129 40.129 -0.29716 0 0 0 0.18493 1 21084 21084 34.222 19.383 1 55768 7346 37561 38392 64721 64721 0.052633351118629434 RYDSVINRL 9 Unmodified _RYDSVINRL_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3134155273438 2 568.314554 1134.61456 0.7548 0.00042897 -1.604 -0.00091158 -0.8492 -0.00048261 568.3138421329326 44.508 0.4068 39.656 39.394 39.801 -4.852 46 32 2 0 0 0 0.10418 1 27178 27178 34.222 12.475 1 12772000 55769 7346 37561 38392 64722 64722 0.052633351118629434 RYDSVINRL 9 Unmodified _RYDSVINRL_ 0 0 0 ENSG00000165494|ENST00000690938|PCF11;nc|ENSG00000165494|O94913|PCF11 ENSG00000165494|ENST00000690938|PCF11 ENSG00000165494|ENST00000690938|PCF11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.8247680664062 3 379.212128 1134.61456 1.1052 0.00041912 -1.2514 -0.00047456 -0.14619 -5.5437E-05 379.2118758419025 44.514 0.36544 39.662 39.461 39.827 -4.852 30 28 2 0 0 0 0.13704 1 27187 27187 24.882 20.353 1 10190000 55770 7346 37561 38392 64723 64723 0.052633351118629434 RYDTAETHI 9 Unmodified _RYDTAETHI_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2675170898438 2 553.26727 1104.51999 1.1798 0.00065274 -0.23861 -0.00013201 0.94119 0.00052073 553.2670898055369 20.67 0.48174 17.977 17.723 18.205 -2.693 103 29 4 0 0 0 0.091924 1 11032 11032 24.021 0 1 58545000 + 55771 29660 37562 38393 64724 64724 -0.028092234301539065 RYDTFWKHF 9 Unmodified _RYDTFWKHF_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1;ENST00000563645.1_1_16:19514794-19516450:-|nuORF ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.2158508300781 3 433.88049 1298.61964 0.58426 0.0002535 1.9219 0.00083389 2.5062 0.0010874 434.2155043223566 48.092 0.17506 48.053 47.967 48.142 -0.038643 21 8 3 0 0 0 0.094149 1 25952 25952 26.021 18.075 1 2109600 55772 322 37563 38394 64725 64725 -0.017723610255416133 RYEAAFPFL 9 Unmodified _RYEAAFPFL_ 0 0 0 nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82 nc|nan|Q6P1X6-2|C8orf82 nc|nan|Q6P1X6-2|C8orf82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.289794921875 2 557.290017 1112.56548 0.97258 0.00054201 -1.1352 -0.00063264 -0.16262 -9.0629E-05 557.2888168706538 80.857 0.32928 80.915 80.733 81.062 0.057587 33 12 3 0 0 0 0.1685 1 44690 44690 26.268 5.3969 1 9320400 55773 10443 37564 38395 64726 64726 0.013700468228989848 RYEAAFPFL 9 Unmodified _RYEAAFPFL_ 0 0 0 nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82 nc|nan|Q6P1X6-2|C8orf82 nc|nan|Q6P1X6-2|C8orf82 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2908325195312 2 557.290017 1112.56548 1.7022 0.00094859 0.67118 0.00037404 2.3733 0.0013226 557.290214922867 98.29 0.1787 92.114 92.027 92.206 -6.1757 22 11 3 0 0 0 0.07087 1 65157 65157 39.95 19.078 1 58341000 55774 10443 37564 38395 64727 64727 0.013700468228989848 RYEEELEINDF 11 Unmodified _RYEEELEINDF_ 0 0 0 nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46 nc|ENSG00000145833|Q7L014|DDX46 nc|ENSG00000145833|Q7L014|DDX46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.224853515625 3 486.224539 1455.65179 0.50724 0.00024663 -0.64927 -0.00031569 -0.14203 -6.9059E-05 486.22419006032885 53.222 0.98064 52.771 52.261 53.242 -0.45173 168 49 6 0 0 0 0.71036 1 28943 28943 1.3296 0 1 469120000 55775 5730 37565 38396 64728 64728 -0.05781082923704162 RYEGILYTI 9 Unmodified _RYEGILYTI_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000149657|Q9BX40-2|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3088989257812 2 564.308406 1126.60226 0.23291 0.00013144 0.92761 0.00052346 1.1605 0.00065489 564.3088605443468 65.519 0.2776 65.519 65.394 65.671 0 27 10 3 0 0 0 0.062454 1 36542 36542 41.956 3.9816 1 1438600 55776 6031;10808 37566 38397 64729 64729 0.04402298648801661 RYEGILYTI 9 Unmodified _RYEGILYTI_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000149657|Q9BX40-2|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3076171875 2 564.308406 1126.60226 0.21016 0.0001186 -0.5496 -0.00031014 -0.33944 -0.00019155 564.3079906129612 65.898 0.2961 65.414 65.289 65.585 -0.48428 32 12 3 0 0 0 0.040683 1 35958 35958 49.554 3.8547 1 17086000 55777 6031;10808 37566 38397 64730 64730 0.04402298648801661 RYEGILYTI 9 Unmodified _RYEGILYTI_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A nc|ENSG00000149657|Q9BX40-2|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A nc|ENSG00000257103|Q8ND56-3|LSM14A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.308406 1126.60226 1.0997 0.00062059 -1.0603 -0.00059835 0.039422 2.2246E-05 564.307995157068 65.493 0.17473 65.493 65.408 65.583 1.5259E-05 0.017889 -0.00095909 NaN 49.554 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4166300 55778 6031;10808 37566 38397 0.04402298648801661 RYEKEMEKERF 11 Unmodified _RYEKEMEKERF_ 0 0 0 REV__ENSG00000129467|ENST00000418030|ADCY4 REV__ENSG00000129467|ENST00000418030|ADCY4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2720336914062 3 515.589047 1543.74531 -0.5019 -0.00025878 0.059348 3.0599E-05 -0.44255 -0.00022818 515.9236191424345 36.541 0.082996 36.292 36.253 36.336 -0.2497 5 3 2 0 0 0 0.30604 1 19158 19158 0.094841 0 1 1673500 + 55779 19667 37567 38398 64731 64731 -0.004810620222770012 RYENIFLDK 9 Unmodified _RYENIFLDK_ 0 0 0 REV__ENSG00000176248|ENST00000323927|ANAPC2 REV__ENSG00000176248|ENST00000323927|ANAPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8779602050781 3 399.880267 1196.61897 -0.35908 -0.00014359 -0.11667 -4.6652E-05 -0.47575 -0.00019024 399.88022793235785 35.432 0.37425 35.21 34.979 35.353 -0.2224 59 16 6 0 0 0 0.43463 1 18485 18485 7.1017 0 1 99181000 + 55780 22920 37568 38399 64732 64732 0.02852799534730366 RYEPRAREQF 10 Unmodified _RYEPRAREQF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant;ENST00000471538.1_1_1:16200459-16203174:+|nuORF ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2337036132812 3 451.233704 1350.67928 0.28491 0.00012856 0.10131 4.5715E-05 0.38622 0.00017427 451.23364710846744 23.262 0.20559 20.484 20.457 20.662 -2.7784 25 13 2 0 0 0 0.59286 1 12595 12595 11.518 3.5725 1 6352700 55781 907 37569 38400 64733 64733 0.01796909917834455 RYEQSSANRFS 11 Unmodified _RYEQSSANRFS_ 0 0 0 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 MSMS AL20221201_MKP_PDAC_01 4 448.8822631835938 3 448.881219 1343.62183 NaN NaN NaN NaN NaN NaN NaN 72.956 1 66.781 66.281 67.281 -6.1757 0 0 0 0.66577 1 47721 47721 18.34 6.8218 1 + 55782 22980 37570 38401 64734 64734 -0.03623977078405005 RYEQSSANRFS 11 Unmodified _RYEQSSANRFS_ 0 0 0 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 REV__nc|ENSG00000177398|Q5DID0-3|UMODL1 MSMS AL20221201_MKP_PDAC_01 4 448.8823547363281 3 448.881219 1343.62183 NaN NaN NaN NaN NaN NaN NaN 73.546 1 67.371 66.871 67.871 -6.1757 0 0 0 0.8789 1 48094 48094 8.2864 1.2493 1 + 55783 22980 37570 38401 64735 64735 -0.03623977078405005 RYESDFDRR 9 Unmodified _RYESDFDRR_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.1996765136719 3 415.198659 1242.57415 1.4097 0.00058532 0.24864 0.00010324 1.6584 0.00068856 415.198893578984 20.852 0.47338 18.159 17.941 18.414 -2.693 79 29 3 0 0 0 0.37578 1 11172 11172 13.615 4.0709 1 14519000 55784 2185 37571 38402 64736 64736 -0.037436312785757764 RYEVWKQKL 9 Unmodified _RYEVWKQKL_ 0 0 0 REV__nc|ENSG00000115165|O60759-2|CYTIP REV__nc|ENSG00000115165|O60759-2|CYTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.2399291992188 3 417.239907 1248.69789 -0.076578 -3.1951E-05 0.5155 0.00021509 0.43892 0.00018314 417.2402139234879 41.259 0.24401 41.257 41.115 41.359 -0.0017929 36 11 4 0 0 0 0.07916 1 22018 22018 34.932 7.7088 1 16204000 + 55785 18955 37572 38403 64737 64737 0.0834907155970086 RYFDALLKL 9 Unmodified _RYFDALLKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8358154296875 2 569.834591 1137.65463 0.92726 0.00052838 2.4424 0.0013918 3.3697 0.0019202 570.3386943784294 70.619 0.32243 70.655 70.463 70.785 0.035515 29 14 3 0 0 0 0.024507 1 38824 38824 72.968 24.622 1 12149000 55786 9204 37573 38404 64738 64738 0.09130881782402867 RYFDALLKL 9 Unmodified _RYFDALLKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.8360595703125 2 569.834591 1137.65463 1.325 0.00075506 0.3932 0.00022406 1.7183 0.00097912 569.8351925767487 97.063 0.24131 90.888 90.787 91.028 -6.1757 26 13 3 0 0 0 0.037118 1 64340 64340 63.961 14.028 1 24745000 55787 9204 37573 38404 64739 64739 0.09130881782402867 RYFDALLKL 9 Unmodified _RYFDALLKL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2256774902344 3 380.225486 1137.65463 1.6552 0.00062935 -0.046193 -1.7564E-05 1.609 0.00061178 380.22556976229384 97.045 0.13266 90.869 90.827 90.96 -6.1757 11 7 2 0 0 0 0.037118 1 64352 64352 51.488 36.65 1 10667000 55788 9204 37573 38404 64740 64740 0.09130881782402867 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.8267822265625 2 627.827495 1253.64044 NaN NaN NaN NaN NaN NaN NaN 45.435 1 45.435 44.935 45.935 0 0 0 0 0.015954 1 24766 24766 73.196 31.241 1 55789 7457 37574 38405 64741 64741 0.02376184563490824 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8878784179688 3 418.887422 1253.64044 NaN NaN NaN NaN NaN NaN NaN 45.481 1 45.481 44.981 45.981 0 0 0 0 0.25043 1 24797 24797 39.923 21.202 1 55790 7457 37574 38405 64742 64742 0.02376184563490824 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8277587890625 2 627.827495 1253.64044 NaN NaN NaN NaN NaN NaN NaN 45.702 1 45.378 44.878 45.878 -0.32425 0 0 0 0.049461 1 24429 24429 64.927 29.995 1 55791 7457 37574 38405 64743 64743 0.02376184563490824 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.8865356445312 3 418.887422 1253.64044 NaN NaN NaN NaN NaN NaN NaN 45.72 1 45.396 44.896 45.896 -0.32425 0 0 0 0.017516 1 24440 24440 76.416 53.4 1 55792 7457 37574 38405 64744 64744 0.02376184563490824 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3294677734375 2 627.827495 1253.64044 0.78696 0.00049408 0.25285 0.00015875 1.0398 0.00065282 627.8275554259886 51.147 0.30645 45.498 45.316 45.622 -5.649 29 18 3 0 0 0 3.1517E-05 1 32128 32128 128.58 48.982 1 40007000 55793 7457 37574 38405 64745 64745 0.02376184563490824 RYFDGNLEKL 10 Unmodified _RYFDGNLEKL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20221201_MKP_PDAC_01 4 418.8880920410156 3 418.887422 1253.64044 NaN NaN NaN NaN NaN NaN NaN 51.094 1 45.445 44.945 45.945 -5.649 0 0 0 5.9607E-06 1 32125 32125 115.82 82.924 1 55794 7457 37574 38405 64746 64746 0.02376184563490824 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2987060546875 2 568.298373 1134.58219 1.0072 0.00057238 0.18067 0.00010267 1.1878 0.00067505 568.2983649079191 50.214 0.43989 49.822 49.532 49.971 -0.3923 52 21 4 0 0 0 0.15471 2 27001 27001;27104 27.629 9.4938 1 40821000 55795 8625 37575 38406 64747;64748 64747 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2016296386719 3 379.201341 1134.58219 0.84608 0.00032083 -0.062324 -2.3633E-05 0.78375 0.0002972 379.20127181109444 50.232 0.29916 49.839 49.672 49.971 -0.3923 45 14 4 0 0 0 0.11784 2 27006 27006;27119 23.801 16.192 1 27487000 55796 8625 37575 38406 64749;64750 64749 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2993774414062 2 568.298373 1134.58219 1.344 0.00076381 -0.62318 -0.00035415 0.72085 0.00040966 568.2983199777997 49.887 0.73033 49.839 49.703 50.433 -0.048824 56 35 3 0 0 0 0.07087 1 26965 26965 39.95 27.418 1 7149800 55797 8625 37575 38406 64751 64751 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2012939453125 3 379.201341 1134.58219 1.1493 0.00043582 -1.1685 -0.00044309 -0.019178 -7.2724E-06 379.2006970507243 49.906 0.22381 49.857 49.723 49.947 -0.048828 32 10 4 0 0 0 0.18144 1 26974 26974 18.721 8.5707 1 5075300 55798 8625 37575 38406 64752 64752 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.29931640625 2 568.298373 1134.58219 0.39451 0.0002242 3.2143 0.0018267 3.6088 0.0020509 568.3016580383303 56.019 0.57288 50.098 49.878 50.451 -5.9211 66 33 3 0 0 0 0.10247 1 35655 35655 32.786 7.9041 1 45509000 55799 8625 37575 38406 64753 64753 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2015686035156 3 379.201341 1134.58219 0.7305 0.00027701 0.16093 6.1023E-05 0.89143 0.00033803 379.2013090132622 56.039 0.27507 50.118 49.937 50.212 -5.9211 25 15 2 0 0 0 0.047788 1 35698 35698 35.612 24.118 1 23820000 55800 8625 37575 38406 64754 64754 0.020285477088464177 RYFDHALTL 9 Unmodified _RYFDHALTL_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2010803222656 3 379.201341 1134.58219 1.8573 0.0007043 -0.52332 -0.00019844 1.334 0.00050586 379.20067355221965 79.551 0.96305 73.375 72.93 73.893 -6.1757 86 56 3 0 0 0 0.46501 2 52071 52071;52279 9.544 5.9569 1 19189000 55801 8625 37575 38406 64755;64756 64755 0.020285477088464177 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5363159179688 3 405.536612 1213.58801 0.11122 4.5104E-05 1.2962 0.00052565 1.4074 0.00057075 405.5366540346497 39.377 0.54037 39.377 38.99 39.53 0 47 25 3 0 0 0 0.10406 1 21114 21114 33.821 25.377 1 2287000 55802 7651 37576 38407 64757 64757 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8692016601562 3 405.536612 1213.58801 0.055917 2.2676E-05 -0.41823 -0.00016961 -0.36232 -0.00014693 405.5365257526706 39.779 0.61821 39.482 39.243 39.862 -0.29716 94 29 5 0 0 0 0.051223 4 20920 20920;21024;21132;21157 42.835 38.719 1 111220000 55803 7651 37576 38407 64758;64759;64760;64761 64758 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3018188476562 2 607.80128 1213.58801 0.047251 2.8719E-05 -0.51607 -0.00031367 -0.46882 -0.00028495 607.8009213335858 39.813 0.46987 39.516 39.243 39.713 -0.29716 84 22 5 0 0 0 0.0022709 2 20921 20921;21023 107.1 85.563 1 150360000 55804 7651 37576 38407 64762;64763 64762 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.80126953125 2 607.80128 1213.58801 NaN NaN NaN NaN NaN NaN NaN 40.014 1 39.717 39.217 40.217 -0.29716 0 0 0 0.57388 1 21134 21134 22.658 12.584 1 55805 7651 37576 38407 64764 64764 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8025512695312 2 607.80128 1213.58801 0.36813 0.00022375 -0.33691 -0.00020478 0.03122 1.8975E-05 607.8010246483229 39.439 0.43608 39.451 39.238 39.674 0.011452 73 20 5 0 0 0 5.5445E-08 2 20931 20931;21035 143.91 103.95 1 117750000 55806 7651 37576 38407 64765;64766 64765 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5373840332031 3 405.536612 1213.58801 0.065805 2.6686E-05 0.096746 3.9234E-05 0.16255 6.5921E-05 405.5366440839737 39.44 0.41583 39.451 39.238 39.654 0.011452 76 19 5 0 0 0 0.043225 2 20933 20933;21036 46.475 39.374 1 69544000 55807 7651 37576 38407 64767;64768 64767 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8719177246094 3 405.536612 1213.58801 0.67226 0.00027262 0.17829 7.2302E-05 0.85054 0.00034493 405.5366563621345 44.271 0.74982 39.419 39.084 39.834 -4.852 203 56 5 0 0 0 0.025861 4 26822 26822;26956;27086;27224 53.47 49.28 1 760310000 55808 7651 37576 38407 64769;64770;64771;64772 64769 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.80029296875 2 607.80128 1213.58801 0.30408 0.00018482 -0.21072 -0.00012807 0.093362 5.6746E-05 607.8011476793992 44.245 1.1929 39.393 39.101 40.294 -4.852 234 87 5 0 0 0 9.8271E-06 6 27225 26830;26967;27097;27225;27348;27538 128.57 88.616 1 673040000 55809 7651 37576 38407 64773;64774;64775;64776;64777;64778 64776 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5367431640625 3 405.536612 1213.58801 0.67492 0.00027371 0.70412 0.00028554 1.379 0.00055925 405.5369850762015 44.781 0.45967 39.929 39.834 40.294 -4.852 41 31 2 0 0 0 0.067957 1 27361 27361 39.213 35.626 1 18088000 55810 7651 37576 38407 64779 64779 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MSMS AL20221201_MKP_PDAC_01 4 405.5364074707031 3 405.536612 1213.58801 NaN NaN NaN NaN NaN NaN NaN 45.369 1 40.414 39.914 40.914 -4.9549 0 0 0 0.12081 1 27833 27833 36.395 29.293 1 55811 7651 37576 38407 64780 64780 -0.010243537794849544 RYFDPANGKF 10 Unmodified _RYFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 607.80128 1213.58801 0.05292 3.2165E-05 0.0078998 4.8015E-06 0.06082 3.6966E-05 607.8016841475098 39.407 0.26411 39.407 39.244 39.508 0 -0.034505 0.00035974 NaN 143.91 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3155500 55812 7651 37576 38407 -0.010243537794849544 RYFDRAALF 9 Unmodified _RYFDRAALF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122666276-122668222:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8735656738281 3 386.873336 1157.59818 0.72278 0.00027962 0.21061 8.1481E-05 0.93339 0.0003611 386.87326460855917 50.654 0.27862 50.601 50.449 50.728 -0.053871 37 13 4 0 0 0 0.40615 1 27454 27454 12.175 2.4105 1 7513500 55813 3488 37577 38408 64781 64781 0.025682539457193343 RYFDTAVLCFL 11 Unmodified _RYFDTAVLCFL_ 0 0 0 REV__ENSG00000197386|ENST00000355072|HTT REV__ENSG00000197386|ENST00000355072|HTT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.8954467773438 3 449.897041 1346.66929 -0.53481 -0.00024061 -1.2112 -0.0005449 -1.746 -0.00078551 449.8964385884489 19.754 0.15429 19.782 19.702 19.856 0.028357 13 9 2 0 0 0 0.72981 1 9976 9976 1.4551 0 1 864850 + 55814 23922 37578 38409 64782 64782 0.00982585868246133 RYFDTPGTF 9 Unmodified _RYFDTPGTF_ 0 0 0 REV__ENST00000447253.1_1_10:13200020-13200104:-|nuORF REV__ENST00000447253.1_1_10:13200020-13200104:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 552.2615356445312 2 552.261456 1102.50836 NaN NaN NaN NaN NaN NaN NaN 17.363 1 14.776 14.276 15.276 -2.5866 0 0 0 0.7453 1 9071 9071 7.9102 0.62092 1 + 55815 27158 37579 38410 64783 64783 -0.03879420453495186 RYFDVGLHNF 10 Unmodified _RYFDVGLHNF_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5464782714844 3 423.212128 1266.61456 -0.18986 -8.0351E-05 0.13883 5.8753E-05 -0.051031 -2.1597E-05 423.2123391142835 55.921 0.22068 55.443 55.279 55.5 -0.47798 14 10 2 0 0 0 0.57893 1 30363 30363 7.4771 6.2622 1 2505600 55816 759 37580 38411 64784 64784 -0.00808664888131716 RYFDVGLHNF 10 Unmodified _RYFDVGLHNF_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5461730957031 3 423.212128 1266.61456 -0.12783 -5.4099E-05 -0.25361 -0.00010733 -0.38144 -0.00016143 423.2123380766523 55.531 0.32849 55.463 55.338 55.666 -0.068741 32 16 3 0 0 0 0.087043 1 30175 30175 36.395 28.239 1 8436100 55817 759 37580 38411 64785 64785 -0.00808664888131716 RYFDVGLHNF 10 Unmodified _RYFDVGLHNF_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.31494140625 2 634.314554 1266.61456 -0.13006 -8.2501E-05 -0.64967 -0.00041209 -0.77973 -0.0004946 634.3145888864872 55.555 0.27062 55.487 55.317 55.588 -0.068737 22 13 2 0 0 0 0.043225 1 30187 30187 61.602 32.52 1 11422000 55818 759 37580 38411 64786 64786 -0.00808664888131716 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.3040161132812 2 583.303655 1164.59276 0.39426 0.00022997 1.085 0.00063291 1.4793 0.00086288 583.3043087518171 47.365 0.28204 47.365 47.212 47.494 0 23 12 2 0 0 0 0.094905 1 25897 25897 36.506 22.6 1 12545000 55819 9805 37581 38412 64787 64787 0.017045303632812647 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3043823242188 2 583.303655 1164.59276 0.55565 0.00032411 0.55439 0.00032338 1.11 0.00064749 583.3037449629277 47.597 0.26159 47.244 47.125 47.387 -0.3526 31 12 3 0 0 0 0.022461 1 25503 25503 66.457 37.375 1 41204000 55820 9805 37581 38412 64788 64788 0.017045303632812647 RYFENPQVI 9 Unmodified _RYFENPQVI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3038940429688 2 583.303655 1164.59276 0.9997 0.00058313 -0.88806 -0.00051801 0.11164 6.512E-05 583.3029279446047 53.519 0.5224 47.714 47.529 48.052 -5.8042 83 33 3 0 0 0 0.022461 2 33996 33853;33996 57.722 41.875 1 178290000 55821 9805 37581 38412 64789;64790 64790 0.017045303632812647 RYFGDKIQNIF 11 Unmodified _RYFGDKIQNIF_ 0 0 0 ENSG00000181396|ENST00000313056|OGFOD3;nc|ENSG00000181396|Q6PK18-2|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 ENSG00000181396|ENST00000313056|OGFOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.5829467773438 3 467.582221 1399.72483 0.73791 0.00034503 0.26637 0.00012455 1.0043 0.00046959 467.5823810955704 57.523 0.19466 57.457 57.339 57.533 -0.066036 13 9 2 0 0 0 0.60536 1 31316 31316 11.065 9.8504 1 1621600 55822 8969 37582 38413 64791 64791 0.04096135380245869 RYFGWVRERHY 11 Unmodified _RYFGWVRERHY_ 0 0 0 REV__ENSG00000140107|ENST00000361529|SLC25A47 REV__ENSG00000140107|ENST00000361529|SLC25A47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.6002807617188 3 523.600498 1567.77966 NaN NaN NaN NaN NaN NaN NaN 30.153 1 30.183 29.683 30.683 0.030106 0 0 0 0.94287 1 15760 15760 0.45452 0.35968 1 + 55823 20450 37583 38414 64792 64792 0.018485669715119002 RYFHWKMNL 9 Unmodified _RYFHWKMNL_ 0 0 0 nc|ENSG00000188092|B7ZAQ6-4|GPR89A;ENST00000532574.5_1_1:145811866-145826998:-|nuORF;ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A nc|ENSG00000188092|B7ZAQ6-4|GPR89A nc|ENSG00000188092|B7ZAQ6-4|GPR89A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2223205566406 3 432.22197 1293.64408 0.93763 0.00040526 -0.73626 -0.00031823 0.20137 8.7037E-05 432.55622525386457 47.326 0.2084 47.287 47.177 47.385 -0.038647 17 9 2 0 0 0 0.54213 1 25542 25542 4.897 3.1547 1 994120 55824 3291 37584 38415 64793 64793 0.009005758563489508 RYFIAPAKF 9 Unmodified _RYFIAPAKF_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8164672851562 2 556.816202 1111.61785 0.50768 0.00028268 0.90225 0.00050239 1.4099 0.00078507 556.8164404778408 48.768 0.17403 48.724 48.654 48.828 -0.04369 11 8 2 0 0 0 0.12424 1 26348 26348 30.637 22.043 1 1653100 55825 4749 37585 38416 64794 64794 0.06650629956516241 RYFIDSTNL 9 Unmodified _RYFIDSTNL_ 0 0 0 ENSG00000142684|ENST00000374266|ZNF593 ENSG00000142684|ENST00000374266|ZNF593 ENSG00000142684|ENST00000374266|ZNF593 MSMS AL20221201_MKP_PDAC_01 4 564.3094482421875 2 564.787838 1127.56112 NaN NaN NaN NaN NaN NaN NaN 59.747 1 53.633 53.133 54.133 -6.1147 0 0 0 0.13831 1 38389 38389 38.176 14.155 1 55826 5441 37586 38417 64795 64795 0.0024453760931919533 RYFIHMPAL 9 Unmodified _RYFIHMPAL_ 0 0 0 nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56 nc|nan|Q8IXR9-2|C12orf56 nc|nan|Q8IXR9-2|C12orf56 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.2459106445312 2 574.307687 1146.60082 1.3243 0.00076054 2.4122 0.0013854 3.7365 0.0021459 574.3093023478261 54.171 0.2289 48.306 48.19 48.419 -5.8653 17 12 2 0 0 0 0.18118 1 34250 34250 18.135 2.2878 1 6854800 55827 9360 37587 38418 64796 64796 0.033383860790536346 RYFILPYVI 9 Unmodified _RYFILPYVI_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.3489379882812 2 592.347335 1182.68012 1.8374 0.0010884 0.61266 0.00036291 2.4501 0.0014513 592.347645746211 94.294 0.43304 94.308 94.083 94.516 0.014244 53 15 5 0 0 0 0.023481 2 52354 52354;52455 67.344 38.857 1 26337000 55828 5126 37588 38419 64797;64798 64797 0.0960835630485235 RYFILPYVI 9 Unmodified _RYFILPYVI_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.3472290039062 2 592.347335 1182.68012 0.68815 0.00040762 0.14764 8.7452E-05 0.83578 0.00049507 592.3469361379388 100.51 0.2177 94.338 94.187 94.404 -6.1757 26 13 4 0 0 0 0.036857 1 67218 67218 57.471 28.985 1 164500000 55829 5126 37588 38419 64799 64799 0.0960835630485235 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.8182373046875 2 561.818941 1121.62333 0.75786 0.00042578 -0.59791 -0.00033592 0.15995 8.9863E-05 561.8184975887989 46.543 0.33205 46.206 46.053 46.385 -0.33664 53 16 4 0 0 0 0.020316 2 24871 24871;24971 69.105 69.105 1 48580000 55830 1039;1938 37589 38420 64800;64801 64800 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8816223144531 3 374.88172 1121.62333 0.57426 0.00021528 -0.10163 -3.8098E-05 0.47263 0.00017718 374.8815987390782 46.546 0.35103 46.209 46.034 46.385 -0.33664 61 17 5 0 0 0 0.047714 2 24872 24872;24970 45.74 27.877 1 49817000 55831 1039;1938 37589 38420 64802;64803 64802 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8818969726562 3 374.88172 1121.62333 0.79946 0.0002997 -0.37174 -0.00013936 0.42773 0.00016035 374.88150860797793 46.288 0.46989 46.255 46.059 46.529 -0.033421 80 22 5 0 0 0 0.021948 2 24833 24833;24937 61.602 33.368 1 191200000 55832 1039;1938 37589 38420 64804;64805 64804 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8196411132812 2 561.818941 1121.62333 1.2818 0.00072016 -0.68667 -0.00038578 0.59517 0.00033438 561.8184858021854 46.276 0.41301 46.242 46.059 46.472 -0.033421 72 19 5 0 0 0 0.0081437 2 24836 24836;24938 114.2 114.2 1 161420000 55833 1039;1938 37589 38420 64806;64807 64806 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8204956054688 2 561.818941 1121.62333 0.61715 0.00034673 -0.04135 -2.3231E-05 0.5758 0.00032349 561.8188415021829 51.963 0.43495 46.229 46.019 46.453 -5.7345 74 29 3 0 0 0 0.0085857 2 32660 32660;32802 122.18 122.18 1 228110000 55834 1039;1938 37589 38420 64808;64809 64808 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8819885253906 3 374.88172 1121.62333 0.94148 0.00035295 -0.22355 -8.3803E-05 0.71794 0.00026914 374.88160157480513 51.949 0.35553 46.215 46.066 46.422 -5.7345 45 24 2 0 0 0 0.029718 2 32681 32681;32828 55.503 30.512 1 119260000 55835 1039;1938 37589 38420 64810;64811 64810 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 374.88232421875 3 374.88172 1121.62333 NaN NaN NaN NaN NaN NaN NaN 79.378 1 73.202 72.702 73.702 -6.1757 0 0 0 0.17798 1 52009 52009 33.445 11.855 1 55836 1039;1938 37589 38420 64812 64812 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 561.8192138671875 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 79.437 1 73.261 72.761 73.761 -6.1757 0 0 0 0.11693 1 52055 52055 51.63 7.7715 1 55837 1039;1938 37589 38420 64813 64813 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 561.8194580078125 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 79.619 1 73.444 72.944 73.944 -6.1757 0 0 0 0.037345 1 52190 52190 69.105 16.837 1 55838 1039;1938 37589 38420 64814 64814 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 561.8194580078125 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 79.979 1 73.803 73.303 74.303 -6.1757 0 0 0 0.061161 1 52452 52452 58.679 20.705 1 55839 1039;1938 37589 38420 64815 64815 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 561.8193969726562 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 80.161 1 73.985 73.485 74.485 -6.1757 0 0 0 0.097684 1 52580 52580 47.749 17.112 1 55840 1039;1938 37589 38420 64816 64816 0.06738308748322197 RYFKGPELL 9 Unmodified _RYFKGPELL_ 0 0 0 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MSMS AL20221201_MKP_PDAC_01 4 561.819091796875 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 80.342 1 74.167 73.667 74.667 -6.1757 0 0 0 0.21752 1 52712 52712 38.176 10.547 1 55841 1039;1938 37589 38420 64817 64817 0.06738308748322197 RYFKTPRKF 9 Unmodified _RYFKTPRKF_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.9080200195312 3 414.90838 1241.70331 -0.037104 -1.5395E-05 1.0853 0.00045031 1.0482 0.00043492 414.90863560105555 19.541 0.12144 19.549 19.466 19.588 0.0078506 11 8 2 0 0 0 0.5209 1 9934 9934 6.1918 1.7857 1 889450 55842 5919 37590 38421 64818 64818 0.09212795142161667 RYFKTPRKF 9 Unmodified _RYFKTPRKF_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.9090881347656 3 414.90838 1241.70331 0.41445 0.00017196 0.10346 4.2926E-05 0.5179 0.00021488 414.90853445438864 22.915 0.3381 20.137 19.984 20.322 -2.7784 47 21 3 0 0 0 0.033747 2 12305 12305;12422 53.317 35.874 1 10939000 55843 5919 37590 38421 64819;64820 64819 0.09212795142161667 RYFLHTGHLTI 11 Unmodified _RYFLHTGHLTI_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;nc|ENSG00000110619|P49589-2|CARS1;ENST00000526890.5_1_11:3039642-3048038:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.2511901855469 3 453.250695 1356.73025 NaN NaN NaN NaN NaN NaN NaN 44.557 1 44.535 44.035 45.035 -0.022064 0 0 0 0.68506 1 23910 23910 17.572 11.338 1 55844 2727 37591 38422 64821 64821 0.06615858962686616 RYFLLCHSSL 10 Unmodified _RYFLLCHSSL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5507202148438 3 413.549864 1237.62776 0.46401 0.00019189 0.8833 0.00036529 1.3473 0.00055718 413.5503175247929 24.27 0.47818 21.442 21.231 21.709 -2.8273 66 26 3 0 0 0 0.32493 1 13153 13153 26.021 0 1 23847000 55845 8296;16388 37592 38423 64822 64822 0.018454498995879476 RYFLLRPETLF 11 Unmodified _RYFLLRPETLF_ 0 0 0 ENSG00000163590|ENST00000498165|PPM1L;nc|ENSG00000163590|Q5SGD2-4|PPM1L ENSG00000163590|ENST00000498165|PPM1L ENSG00000163590|ENST00000498165|PPM1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.610595703125 3 485.61 1453.80817 NaN NaN NaN NaN NaN NaN NaN 75.516 1 75.564 75.064 76.064 0.047943 0 0 0 0.78351 1 41649 41649 12.856 1.3381 1 55846 7024 37593 38424 64823 64823 0.0994187182807309 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3138427734375 2 602.313492 1202.61243 0.23106 0.00013917 0.19075 0.00011489 0.42181 0.00025406 602.3135609157665 78.427 0.74346 78.479 78.063 78.806 0.052452 103 30 5 0 0 0 0.0090948 3 43449 43236;43337;43449 85.272 67.126 1 43146000 55847 544 37594 38425 64824;64825;64826 64826 0.01922906374034028 RYFLPPYTF 9 Unmodified _RYFLPPYTF_ 0 0 0 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 ENSG00000023608|ENST00000216294|SNAPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3099975585938 2 602.313492 1202.61243 0.24183 0.00014566 -1.2525 -0.00075437 -1.0106 -0.00060871 602.3121322691726 78.976 0.2486 79.031 78.936 79.185 0.05497 13 9 2 0 0 0 0.23158 1 43630 43630 20.454 7.9221 1 1377300 55848 544 37594 38425 64827 64827 0.01922906374034028 RYFLVQEYCS 10 Unmodified _RYFLVQEYCS_ 0 0 0 nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF;ENSG00000144481|ENST00000324695|TRPM8 nc|ENSG00000144481|Q7Z2W7-4|TRPM8 nc|ENSG00000144481|Q7Z2W7-4|TRPM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 654.809326171875 2 654.308081 1306.60161 -0.62276 -0.00040748 1.2703 0.00083114 0.6475 0.00042366 654.308573651217 18.452 0.077553 18.452 18.391 18.469 0 13 9 2 0 0 0 0.71123 1 9167 9167 1.6526 1.2519 1 468330 55849 5615 37595 38426 64828 64828 -0.0394286406253741 RYFLWHTYRWL 11 Unmodified _RYFLWHTYRWL_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 821.4286499023438 2 820.927877 1639.8412 0.53364 0.00043808 -2.7614 -0.0022669 -2.2277 -0.0018288 820.9248030734647 48.521 0.15961 48.477 48.395 48.555 -0.04369 14 7 3 0 0 0 0.7453 1 26204 26204 0 0 1 1297700 55850 3090 37596 38427 64829 64829 0.04687498670796231 RYFMPRKNQ 9 Unmodified _RYFMPRKNQ_ 0 0 0 ENST00000487273.6_1_8:38912085-38913136:+|nuORF ENST00000487273.6_1_8:38912085-38913136:+|nuORF ENST00000487273.6_1_8:38912085-38913136:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 413.5809936523438 3 413.885358 1238.63425 1.1667 0.00048288 -2.7867 -0.0011534 -1.62 -0.0006705 413.8840812097422 89.975 0.30318 83.799 83.685 83.988 -6.1757 24 16 2 0 0 0 0.20207 1 59514 59514 7.609 0 1 7607200 55851 14201 37597 38428 64830 64830 0.024473878509525093 RYFNPKDYSW 10 Unmodified _RYFNPKDYSW_ 0 0 0 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 688.3282470703125 2 688.325119 1374.63569 0.64278 0.00044244 1.2577 0.00086572 1.9005 0.0013082 688.325702530719 47.814 0.20868 47.775 47.661 47.869 -0.038643 16 9 2 0 0 0 0.16688 1 25777 25777 29.841 21.095 1 1689900 55852 3646 37598 38429 64831 64831 -0.0366469957928075 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.796875 2 584.287671 1166.56079 0.19045 0.00011128 -0.064138 -3.7475E-05 0.12632 7.3806E-05 584.2875532240363 58.179 0.47265 57.689 57.471 57.944 -0.48974 81 22 5 0 0 0 0.28023 3 31540 31540;31561;31665 18.146 18.146 1 207520000 + 55853 22306 37599 38430 64832;64833;64834 64832 -0.015828821105287716 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2839965820312 2 584.287671 1166.56079 1.2259 0.00071628 -0.7853 -0.00045884 0.44061 0.00025744 584.2869797056323 64.572 1.3411 58.397 57.88 59.221 -6.1757 314 73 6 0 0 0 0.19127 5 41612 41612;41742;41880;42009;42143 24.021 5.1039 1 2635600000 + 55854 22306 37599 38430 64835;64836;64837;64838;64839 64835 -0.015828821105287716 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2874145507812 2 584.287671 1166.56079 0.35839 0.0002094 -0.084911 -4.9612E-05 0.27348 0.00015979 584.2868515254177 65.668 0.95482 59.492 59.162 60.117 -6.1757 145 55 3 0 0 0 0.28023 1 42731 42731 18.146 3.3081 1 117840000 + 55855 22306 37599 38430 64840 64840 -0.015828821105287716 RYFPDLDEL 9 Unmodified _RYFPDLDEL_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.28759765625 2 584.287671 1166.56079 0.61986 0.00036218 -0.70769 -0.0004135 -0.087834 -5.132E-05 584.2871436824404 67.07 1.8442 60.894 60.096 61.94 -6.1757 394 104 5 0 0 0 0.19127 7 43582 43308;43441;43582;43713;43842;43968;44246 24.021 24.021 1 557220000 + 55856 22306 37599 38430 64841;64842;64843;64844;64845;64846;64847 64843 -0.015828821105287716 RYFPDRNVALF 11 Unmodified _RYFPDRNVALF_ 0 0 0 nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.5819396972656 3 466.582333 1396.72517 -0.32057 -0.00014957 0.090178 4.2075E-05 -0.2304 -0.0001075 466.58221050322425 56.241 0.60651 56.172 55.852 56.458 -0.068741 88 31 4 0 0 0 0.029988 3 30583 30477;30583;30693 39.413 30.661 1 18788000 55857 5928 37600 38431 64848;64849;64850 64849 0.04267555100068421 RYFPDRNVALF 11 Unmodified _RYFPDRNVALF_ 0 0 0 nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.8715209960938 2 699.369861 1396.72517 -0.22806 -0.0001595 0.89254 0.00062422 0.66448 0.00046472 699.370498365711 56.234 0.36221 56.165 55.942 56.304 -0.068737 19 18 2 0 0 0 0.60863 1 30543 30543 10.899 6.0019 1 3625100 55858 5928 37600 38431 64851 64851 0.04267555100068421 RYFPDRNVALF 11 Unmodified _RYFPDRNVALF_ 0 0 0 nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.3705444335938 2 699.369861 1396.72517 0.63837 0.00044645 0.84899 0.00059376 1.4874 0.0010402 699.370184829145 85.949 0.43134 79.774 79.566 79.997 -6.1757 35 23 2 0 0 0 4.7025E-09 2 56712 56572;56712 114.5 88.229 1 11621000 55859 5928 37600 38431 64852;64853 64853 0.04267555100068421 RYFPDRNVALF 11 Unmodified _RYFPDRNVALF_ 0 0 0 nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E nc|ENSG00000148384|Q9NRR6-2|INPP5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.5827026367188 3 466.582333 1396.72517 0.91096 0.00042504 0.32933 0.00015366 1.2403 0.00057869 466.5821724619802 85.985 0.72689 79.81 79.361 80.088 -6.1757 92 40 3 0 0 0 0.47965 1 56706 56706 23.016 10.841 1 33596000 55860 5928 37600 38431 64854 64854 0.04267555100068421 RYFPNPEEF 9 Unmodified _RYFPNPEEF_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2;nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000502665.1_1_4:187126176-187131792:+|nuORF ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7802734375 2 599.780013 1197.54547 0.16844 0.00010103 -3.0467 -0.0018274 -2.8783 -0.0017264 599.7779887825465 54.344 0.43826 53.877 53.626 54.064 -0.46664 50 22 3 0 0 0 0.018301 2 29402 29402;29508 65.235 45.978 1 10393000 55861 5700 37601 38432 64855;64856 64855 -0.04539748907723151 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2218322753906 3 441.222693 1320.64625 -0.28428 -0.00012543 -0.56649 -0.00024995 -0.85076 -0.00037538 441.22223566904313 35.131 0.32584 35.131 34.939 35.265 0 24 16 2 0 0 0 0.019459 1 18528 18528 39.923 33.299 1 2437100 55862 9027 37602 38433 64857 64857 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.222900390625 3 441.222693 1320.64625 -0.40146 -0.00017713 0.42099 0.00018575 0.019537 8.6202E-06 441.2228471496698 35.25 0.43815 35.027 34.83 35.268 -0.2224 59 19 4 0 0 0 0.00013798 2 18504 18403;18504 66.683 54.455 1 10159000 55863 9027 37602 38433 64858;64859 64859 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.3304443359375 2 661.330402 1320.64625 -0.34046 -0.00022516 -0.10149 -6.712E-05 -0.44196 -0.00029228 661.3303519600059 35.27 0.41512 35.048 34.83 35.245 -0.2224 47 18 3 0 0 0 0.072475 2 18414 18414;18522 46.022 32.407 1 5203100 55864 9027 37602 38433 64860;64861 64860 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2231750488281 3 441.222693 1320.64625 0.40559 0.00017896 0.75446 0.00033288 1.1601 0.00051184 441.2231573213658 39.972 0.45844 35.442 35.247 35.705 -4.5294 72 39 2 0 0 0 4.0010999999999997E-28 2 23746 23746;23871 119.6 94.645 1 34944000 55865 9027 37602 38433 64862;64863 64862 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.32958984375 2 661.330402 1320.64625 -0.064317 -4.2535E-05 -0.30949 -0.00020468 -0.37381 -0.00024721 661.3300006842262 40.005 0.42015 35.475 35.275 35.695 -4.5294 53 36 2 0 0 0 5.3697E-75 2 23902 23759;23902 216.42 164.79 1 31732000 55866 9027 37602 38433 64864;64865 64865 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MSMS AL20221201_MKP_PDAC_01 4 441.2241516113281 3 441.222693 1320.64625 NaN NaN NaN NaN NaN NaN NaN 40.245 1 35.715 35.215 36.215 -4.5294 0 0 0 0.073448 1 24013 24013 38.559 32.691 1 55867 9027 37602 38433 64866 64866 -0.00124716924869972 RYFPSTAEHTL 11 Unmodified _RYFPSTAEHTL_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 661.330402 1320.64625 0.34729 0.00022968 0.11653 7.7062E-05 0.46382 0.00030674 661.3298894841707 35.013 0.13512 35.04 34.947 35.082 0.027401 -0.0037253 0.00024846 NaN 46.022 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 554830 55868 9027 37602 38433 -0.00124716924869972 RYFPTQALNF 10 Unmodified _RYFPTQALNF_ 0 0 0 ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000151475|ENST00000281154|SLC25A31;ENSG00000005022|ENST00000317881|SLC25A5;ENSG00000151729|ENST00000281456|SLC25A4 ENSG00000169100|ENST00000381401|SLC25A6;ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.823974609375 2 628.824755 1255.63496 0.40171 0.00025261 0.63944 0.0004021 1.0412 0.0006547 628.8253874450095 82.548 1.4424 76.373 75.481 76.924 -6.1757 140 81 2 0 0 0 0.020986 6 53973 53712;53846;53973;54097;54229;54358 86.332 44.492 1 21579000 55869 295;7835 37603 38434 64867;64868;64869;64870;64871;64872 64869 0.017365057716460797 RYFQPPGTW 9 Unmodified _RYFQPPGTW_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3;ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENST00000439704.1_1_7:63370572-63370830:-|nuORF ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2843627929688 2 576.285266 1150.55598 -0.10257 -5.9108E-05 0.043543 2.5093E-05 -0.059024 -3.4015E-05 576.2858336619919 53.7 0.58029 53.636 53.444 54.025 -0.063423 70 35 3 0 0 0 0.21589 1 29174 29174 29.082 0 1 21477000 55870 7858 37604 38435 64873 64873 -0.013277214626214118 RYFQPPGTW 9 Unmodified _RYFQPPGTW_ 0 0 0 ENSG00000169251|ENST00000351193|NMD3;ENST00000473909.5_1_3:160939100-160952664:+|nuORF;ENST00000439704.1_1_7:63370572-63370830:-|nuORF ENSG00000169251|ENST00000351193|NMD3 ENSG00000169251|ENST00000351193|NMD3 MSMS AL20221201_MKP_PDAC_01 4 576.2894897460938 2 576.285266 1150.55598 NaN NaN NaN NaN NaN NaN NaN 59.473 1 53.358 52.858 53.858 -6.1147 0 0 0 0.28328 1 38190 38190 34.402 8.1336 1 55871 7858 37604 38435 64874 64874 -0.013277214626214118 RYFQQARLADE 11 Unmodified _RYFQQARLADE_ 0 0 0 REV__nc|ENSG00000173898|O15020-2|SPTBN2 REV__nc|ENSG00000173898|O15020-2|SPTBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.23681640625 3 466.237114 1395.68951 0.43049 0.00020071 -0.062589 -2.9181E-05 0.3679 0.00017153 466.2369515730122 84.517 0.498 84.017 83.729 84.227 -0.49961 60 22 3 0 0 0 0.72131 1 46259 46259 2.2527 0.34635 1 3228800 + 55872 22757 37605 38436 64875 64875 0.007494728524306993 RYFTQIVGF 9 Unmodified _RYFTQIVGF_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8032836914062 2 565.803291 1129.59203 0.67004 0.00037911 -0.50046 -0.00028316 0.16958 9.595E-05 565.8029381233165 69.453 0.31522 69.484 69.314 69.629 0.030914 56 18 4 0 0 0 0.023481 1 38183 38183 60.074 20.124 1 62350000 55873 5032 37606 38437 64876 64876 0.032417357142321634 RYFTQIVGF 9 Unmodified _RYFTQIVGF_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8038940429688 2 565.803291 1129.59203 0.86912 0.00049175 0.95714 0.00054156 1.8263 0.0010333 565.8039892978185 92.65 0.58156 86.474 86.115 86.697 -6.1757 92 35 3 0 0 0 0.047788 2 61176 61176;61303 45.7 5.7499 1 118730000 55874 5032 37606 38437 64877;64878 64877 0.032417357142321634 RYFWHVRE 8 Unmodified _RYFWHVRE_ 0 0 0 ENSG00000156564|ENST00000338305|LRFN2 ENSG00000156564|ENST00000338305|LRFN2 ENSG00000156564|ENST00000338305|LRFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2055358886719 3 398.205197 1191.59376 -0.61989 -0.00024684 -0.064415 -2.565E-05 -0.68431 -0.00027249 398.20519426939836 26.762 0.44106 26.762 26.571 27.012 0 32 20 2 0 0 0 0.80722 1 13842 13842 1.4819 0.85508 1 729020 55875 6467 37607 38438 64879 64879 0.005627895228371926 RYFYKVHQL 9 Unmodified _RYFYKVHQL_ 0 0 0 nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5653686523438 3 418.564502 1252.67168 -0.012178 -5.0975E-06 0.59777 0.00025021 0.58559 0.00024511 418.56467939073355 29.138 0.24552 29.168 29.054 29.299 0.030104 39 9 5 0 0 0 0.0082485 1 15170 15170 96.367 58.595 1 77801000 55876 6682 37608 38439 64880 64880 0.05544802388226344 RYFYKVHQL 9 Unmodified _RYFYKVHQL_ 0 0 0 nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5646362304688 3 418.564502 1252.67168 NaN NaN NaN NaN NaN NaN NaN 29.292 1 29.322 28.822 29.822 0.030106 0 0 0 0.76439 1 15280 15280 4.5289 2.4449 1 55877 6682 37608 38439 64881 64881 0.05544802388226344 RYFYKVHQL 9 Unmodified _RYFYKVHQL_ 0 0 0 nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 nc|ENSG00000160058|Q9NW68-9|BSDC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.8852844238281 3 418.564502 1252.67168 0.80113 0.00033532 0.72055 0.0003016 1.5217 0.00063692 418.56444697624846 32.935 0.49648 29.079 28.776 29.272 -3.8562 60 29 3 0 0 0 0.20572 1 18892 18892 10.151 5.6217 1 58602000 55878 6682 37608 38439 64882 64882 0.05544802388226344 RYFYLLENL 9 Unmodified _RYFYLLENL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8322143554688 2 615.829506 1229.64446 1.4306 0.000881 0.44987 0.00027704 1.8805 0.001158 615.8297495040097 81.248 0.36108 81.308 81.064 81.425 0.059929 32 13 4 0 0 0 0.076472 1 44888 44888 49.933 0 1 4212900 55879 3605 37609 38440 64883 64883 0.03882274057173163 RYGDCHPVF 9 Carbamidomethyl (C) _RYGDC(Carbamidomethyl (C))HPVF_ RYGDC(1)HPVF RYGDC(48)HPVF 0 1 0 nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 nc|ENSG00000185104|Q9UNN5-2|FAF1 MSMS AL20221201_MKP_PDAC_01 4 575.7597045898438 2 575.758558 1149.50256 NaN NaN NaN NaN NaN NaN NaN 34.314 1 30.328 29.828 30.828 -3.9853 0 0 0 0.083082 1 19773 19773 47.749 30.636 1 55880 9333 37610 38441 64884 64884 871 -0.06620842236816316 RYGDGGSSF 9 Unmodified _RYGDGGSSF_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2069702148438 2 473.206681 944.398809 -0.13901 -6.5778E-05 0.91647 0.00043368 0.77747 0.0003679 473.20708248763475 22.509 0.38997 22.509 22.304 22.694 0 26 18 2 0 0 0 0.28023 1 11436 11436 18.146 1.2041 1 525260 55881 3981 37611 38442 64885 64885 -0.0756142607278889 RYGDGGSSF 9 Unmodified _RYGDGGSSF_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 473.206681 944.398809 -0.13901 -6.5778E-05 0.91647 0.00043368 0.77747 0.0003679 473.20708248763475 22.509 0.38997 22.509 22.304 22.694 0 -0.0063277 -0.00024937 NaN 18.146 26 18 2 NaN NaN NaN NaN 0 NaN NaN 0 525260 55882 3981 37611 38442 -0.0756142607278889 RYGDGGSSF 9 Unmodified _RYGDGGSSF_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 473.206681 944.398809 -0.13053 -6.1766E-05 1.5497 0.00073331 1.4191 0.00067154 473.207487717197 25.405 0.16125 22.522 22.464 22.625 -2.8831 0.0063277 0.00034988 NaN 18.146 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2054000 55883 3981 37611 38442 -0.0756142607278889 RYGDGGSTF 9 Unmodified _RYGDGGSTF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2142639160156 2 480.214506 958.414459 -0.17947 -8.6184E-05 0.014722 7.0698E-06 -0.16475 -7.9114E-05 480.214402837041 24.274 0.49526 24.274 23.995 24.49 0 85 28 4 0 0 0 0.036857 1 12396 12396 51.63 1.9609 1 10657000 55884 7827 37612 38443 64886 64886 -0.06641139555756581 RYGDGGSTF 9 Unmodified _RYGDGGSTF_ 0 0 0 ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000169045|ENST00000393432|HNRNPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.21484375 2 480.214506 958.414459 0.56345 0.00027058 -0.6981 -0.00033524 -0.13466 -6.4664E-05 480.21414445468537 27.378 0.36039 24.341 24.199 24.559 -3.0365 37 17 3 0 0 0 0.017075 3 15153 15153;15248;15278 66.457 24.362 1 35296000 55885 7827 37612 38443 64887;64888;64889 64887 -0.06641139555756581 RYGDQREMEF 10 Unmodified _RYGDQREMEF_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2013244628906 3 444.199671 1329.57718 1.5129 0.00067202 -0.087683 -3.8949E-05 1.4252 0.00063307 444.19977611285327 35.91 0.35876 31.718 31.555 31.914 -4.1928 49 22 3 0 0 0 0.24975 1 20892 20892 30.431 8.8413 1 10269000 55886 678 37613 38444 64890 64890 -0.07442124216072443 RYGDQREMEF 10 Unmodified _RYGDQREMEF_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.7965087890625 2 665.795869 1329.57718 1.0799 0.00071901 -0.45364 -0.00030203 0.62629 0.00041698 665.7954748682469 35.982 0.20678 31.789 31.613 31.82 -4.1928 18 12 2 0 0 0 0.22922 1 20951 20951 23.79 12.99 1 4326000 55887 678 37613 38444 64891 64891 -0.07442124216072443 RYGGAPQA 8 Unmodified _RYGGAPQA_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000601356.1_1_19:50308891-50309035:+|nuORF ENSG00000196961|ENST00000354293|AP2A1 ENSG00000196961|ENST00000354293|AP2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2096252441406 2 410.209027 818.403501 NaN NaN NaN NaN NaN NaN NaN 29.252 1 29.19 28.69 29.69 -0.062159 0 0 0 0.97444 1 15125 15125 5.2307 2.3415 1 55888 9890 37614 38445 64892 64892 -0.012964971394012537 RYGGDDTSDGG 11 Unmodified _RYGGDDTSDGG_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2176513671875 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 12.405 1 12.34 11.84 12.84 -0.064889 0 0 0 0.9435 1 6031 6031 0 0 1 + 55889 19145 37615 38446 64893 64893 -0.12387871465875833 RYGGDDTSDGG 11 Unmodified _RYGGDDTSDGG_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2169189453125 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 13.062 1 13.014 12.514 13.514 -0.048298 0 0 0 0.9435 1 6340 6340 0 0 1 + 55890 19145 37615 38446 64894 64894 -0.12387871465875833 RYGGDDTSDGG 11 Unmodified _RYGGDDTSDGG_ 0 0 0 REV__ENSG00000118322|ENST00000327245|ATP10B REV__ENSG00000118322|ENST00000327245|ATP10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2179565429688 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 9.9288 1 9.9463 9.4463 10.446 0.017581 0 0 0 0.9435 1 4920 4920 0 0 1 + 55891 19145 37615 38446 64895 64895 -0.12387871465875833 RYGIHPAKF 9 Unmodified _RYGIHPAKF_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.5390625 3 363.538176 1087.5927 0.13079 4.7546E-05 0.46417 0.00016874 0.59495 0.00021629 363.5383984241004 24.846 0.17564 24.871 24.732 24.907 0.024429 12 7 2 0 0 0 0.062454 1 12814 12814 41.956 30.461 1 5988100 55892 2063 37616 38447 64896 64896 0.0524057515392542 RYGIHPAKF 9 Unmodified _RYGIHPAKF_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5384216308594 3 363.538176 1087.5927 1.1357 0.00041289 0.84822 0.00030836 1.984 0.00072125 363.5385324048713 28.042 0.34628 24.894 24.731 25.077 -3.1482 46 18 3 0 0 0 0.029718 1 15565 15565 55.503 44.008 1 24694000 55893 2063 37616 38447 64897 64897 0.0524057515392542 RYGLLTNEI 9 Unmodified _RYGLLTNEI_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7984008789062 2 539.798206 1077.58186 0.75692 0.00040858 -1.0456 -0.00056444 -0.28872 -0.00015585 539.797567830746 54.081 0.3943 54.081 53.876 54.271 0 47 17 3 0 0 0 0.076472 1 29974 29974 41.84 11.203 1 35198000 55894 2601 37617 38448 64898 64898 0.046171279889904326 RYGLLTNEI 9 Unmodified _RYGLLTNEI_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7982788085938 2 539.798206 1077.58186 -0.12918 -6.9731E-05 0.2201 0.00011881 0.09092 4.9078E-05 539.7982889722624 54.554 0.35736 54.087 53.904 54.261 -0.46664 54 18 4 0 0 0 0.047714 2 29605 29499;29605 49.933 17.628 1 48333000 55895 2601 37617 38448 64899;64900 64900 0.046171279889904326 RYGLLTNEI 9 Unmodified _RYGLLTNEI_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7981567382812 2 539.798206 1077.58186 0.88104 0.00047558 0.1507 8.1348E-05 1.0317 0.00055693 539.7982118232981 60.441 0.44462 54.294 54.05 54.495 -6.1478 52 23 3 0 0 0 0.11005 1 38902 38902 34.402 2.0962 1 154790000 55896 2601 37617 38448 64901 64901 0.046171279889904326 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7903442382812 2 532.790381 1063.56621 0.60318 0.00032137 -1.071 -0.00057063 -0.46785 -0.00024926 532.7896754780426 45.871 0.6878 45.871 45.644 46.332 0 110 33 5 0 0 0 0.013041 2 25110 25000;25110 71.922 14.451 1 1578599999.9999998 55897 3102 37618 38449 64902;64903 64903 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7905883789062 2 532.790381 1063.56621 0.27141 0.0001446 0.25396 0.00013531 0.52536 0.00027991 532.7904140753332 46.127 0.44456 45.791 45.57 46.015 -0.33664 81 22 5 0 0 0 0.044011 2 24735 24624;24735 47.749 5.9149 1 425710000 55898 3102 37618 38449 64904;64905 64905 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.791259765625 2 532.790381 1063.56621 0.24914 0.00013274 -0.085434 -4.5519E-05 0.16371 8.7221E-05 532.7905978431336 45.863 0.70383 45.835 45.421 46.125 -0.028011 75 34 4 0 0 0 0.14 1 24731 24731 29.082 0.59474 1 39346000 55899 3102 37618 38449 64906 64906 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7906494140625 2 532.790381 1063.56621 0.40799 0.00021738 -0.10391 -5.5364E-05 0.30408 0.00016201 532.790262851339 51.824 0.82228 46.09 45.571 46.393 -5.7345 156 53 4 0 0 0 0.018301 3 32780 32509;32633;32780 65.235 5.7954 1 3726299999.9999995 55900 3102 37618 38449 64907;64908;64909 64909 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1065.579711914062 1 1064.57349 1063.56621 0.26169 0.00027859 -0.39558 -0.00042112 -0.13389 -0.00014253 1064.5726307157406 51.813 0.38882 46.079 45.875 46.264 -5.7345 55 25 3 0 0 0 0.11784 1 32753 32753 31.268 0.6318 1 127210000 55901 3102 37618 38449 64910 64910 0.036968414719467546 RYGLVTNEI 9 Unmodified _RYGLVTNEI_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1064.57349 1063.56621 -0.13353 -0.00014216 -1.3735 -0.0014622 -1.507 -0.0016043 1064.5719753504047 45.849 0.29892 45.849 45.745 46.044 0 -0.11481 -0.00073914 NaN 31.268 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 13759000 55902 3102 37618 38449 0.036968414719467546 RYGNFQLYQM 10 Oxidation (M) _RYGNFQLYQM(Oxidation (M))_ RYGNFQLYQM(1) RYGNFQLYQM(110) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 668.8134765625 2 668.311155 1334.60776 0.26876 0.00017962 -0.37152 -0.00024829 -0.10275 -6.867E-05 668.3109065934175 45.058 0.27212 45.036 44.997 45.269 -0.022064 29 15 2 0 0 0 0.0014571 1 24212 24212 111.29 88.551 1 20142000 55903 3480 37619 38450 64911 64911 619 -0.04616345831050239 RYGNFQLYQM 10 Oxidation (M) _RYGNFQLYQM(Oxidation (M))_ RYGNFQLYQM(1) RYGNFQLYQM(56) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 668.3126220703125 2 668.311155 1334.60776 NaN NaN NaN NaN NaN NaN NaN 45.292 1 45.264 44.764 45.764 -0.028011 0 0 0 0.054531 1 24324 24324 56.177 16.227 1 55904 3480 37619 38450 64912 64912 619 -0.04616345831050239 RYGNFQLYQM 10 Oxidation (M) _RYGNFQLYQM(Oxidation (M))_ RYGNFQLYQM(1) RYGNFQLYQM(100) 0 0 1 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.8134765625 2 668.311155 1334.60776 0.76268 0.0005097 -0.021091 -1.4095E-05 0.74158 0.00049561 668.311037082457 50.832 0.3582 45.183 45.007 45.366 -5.649 38 21 2 0 0 0 0.0045909 2 31982 31846;31982 99.799 75.778 1 28785000 55905 3480 37619 38450 64913;64914 64914 619 -0.04616345831050239 RYGNFQLYQM 10 Unmodified _RYGNFQLYQM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.313720703125 2 660.313697 1318.61284 1.0783 0.00071199 -2.0631 -0.0013623 -0.98488 -0.00065033 660.3126037927967 57.247 0.16142 57.181 57.078 57.239 -0.066036 11 7 2 0 0 0 0.18439 1 31166 31166 41.84 16.44 1 3105000 55906 3480 37619 38451 64915 64915 -0.03372041968418671 RYGNFQLYQM 10 Unmodified _RYGNFQLYQM_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.313232421875 2 660.313697 1318.61284 0.47112 0.00031109 1.0595 0.00069962 1.5307 0.0010107 660.3141914638156 63.236 0.47126 57.06 56.821 57.292 -6.1757 45 26 2 0 0 0 0.031932 2 40777 40777;40909 69.105 8.7399 1 19814000 55907 3480 37619 38451 64916;64917 64916 -0.03372041968418671 RYGNVNLEL 9 Unmodified _RYGNVNLEL_ 0 0 0 ENSG00000175105|ENST00000636215|ZNF654;ENST00000473136.4_2_3:88108451-88184391:+|nuORF ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2882080078125 2 539.288005 1076.56146 0.66286 0.00035747 -0.72978 -0.00039356 -0.066924 -3.6091E-05 539.2875228062691 51.005 0.24218 51.005 50.843 51.085 0 20 12 2 0 0 0 0.07916 1 28101 28101 37.974 1.847 1 7861200 55908 8485 37620 38452 64918 64918 0.02623957329183213 RYGNVSHF 8 Unmodified _RYGNVSHF_ 0 0 0 nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-3|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2400512695312 2 490.240858 978.467164 -0.26216 -0.00012852 -0.24287 -0.00011907 -0.50503 -0.00024759 490.24077748531613 21.576 0.17841 21.576 21.466 21.645 0 37 22 2 0 0 0 0.70294 1 10902 10902 16.942 2.3606 1 1284300 55909 6186 37621 38453 64919 64919 -0.022931367022920313 RYGNVSHF 8 Unmodified _RYGNVSHF_ 0 0 0 nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-3|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2407531738281 2 490.240858 978.467164 -0.083562 -4.0965E-05 0.25598 0.00012549 0.17242 8.4526E-05 490.2409916605322 21.444 0.17383 21.473 21.381 21.555 0.028357 14 9 2 0 0 0 0.46494 1 10885 10885 38.151 15.003 1 1517900 55910 6186 37621 38453 64920 64920 -0.022931367022920313 RYGNVSHF 8 Unmodified _RYGNVSHF_ 0 0 0 nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-3|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2417907714844 2 490.240858 978.467164 0.18408 9.0244E-05 1.4192 0.00069575 1.6033 0.00078599 490.24157593353823 23.965 0.33256 21.138 21.024 21.356 -2.8273 47 18 3 0 0 0 0.21098 2 12972 12972;13087 68.081 13.307 1 15256000 55911 6186 37621 38453 64921;64922 64921 -0.022931367022920313 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.286865234375 2 541.287474 1080.5604 0.52429 0.00028379 0.21448 0.00011609 0.73877 0.00039989 541.2865668443573 51.514 0.24977 51.514 51.393 51.642 0 19 11 2 0 0 0 0.21589 1 28467 28467 29.082 13.234 1 16122000 55912 6334 37622 38454 64923 64923 0.023337429602634074 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2870483398438 2 541.287474 1080.5604 0.29643 0.00016045 2.07 0.0011204 2.3664 0.0012809 541.2873136154757 52.067 0.35683 51.633 51.494 51.851 -0.43367 69 17 5 0 0 0 0.15882 1 28102 28102 29.082 8.628 1 18432000 55913 6334 37622 38454 64924 64924 0.023337429602634074 RYGPIVDVY 9 Unmodified _RYGPIVDVY_ 0 0 0 nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 nc|ENSG00000188529|O75494-5|SRSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.28759765625 2 541.287474 1080.5604 -0.066602 -3.6051E-05 1.7841 0.0009657 1.7175 0.00092965 541.2884668405896 51.488 0.45031 51.434 51.306 51.756 -0.053871 43 22 2 0 0 0 0.20507 1 28023 28023 30.637 10.183 1 2646000 55914 6334 37622 38454 64925 64925 0.023337429602634074 RYGPVCQCYF 10 Unmodified _RYGPVCQCYF_ 0 0 0 REV__nc|ENSG00000131355|Q9BY15-3|ADGRE3 REV__nc|ENSG00000131355|Q9BY15-3|ADGRE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.2728271484375 2 618.270444 1234.52633 0.59555 0.00036821 2.5959 0.001605 3.1915 0.0019732 618.2721285439303 53.13 0.21303 53.13 52.982 53.195 0 17 9 2 0 0 0 0.69064 1 29431 29431 3.9444 0 1 2022900 + 55915 19783 37623 38455 64926 64926 -0.08154744794637736 RYGPVFTV 8 Unmodified _RYGPVFTV_ 0 0 0 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7594299316406 2 469.758352 937.502152 0.43691 0.00020524 0.43993 0.00020666 0.87683 0.0004119 469.7584914828787 53.44 0.24649 52.988 52.841 53.087 -0.45173 32 11 3 0 0 0 0.57045 1 28878 28878 28.487 0 1 3429400 55916 1100 37624 38456 64927 64927 0.030901061056624712 RYGPVFTV 8 Unmodified _RYGPVFTV_ 0 0 0 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.7586364746094 2 469.758352 937.502152 0.16225 7.6218E-05 0.69435 0.00032618 0.8566 0.00040239 469.7587388689978 53.076 0.27018 53.013 52.845 53.115 -0.063423 34 13 3 0 0 0 0.42423 1 28739 28739 42.095 11.87 1 5293400 55917 1100 37624 38456 64928 64928 0.030901061056624712 RYGRVNYVL 9 Unmodified _RYGRVNYVL_ 0 0 0 ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35166876-35196659:-|nuORF ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5490112304688 3 380.548852 1138.62473 -0.1705 -6.4884E-05 -1.151 -0.000438 -1.3215 -0.00050289 380.5491853210223 36.021 0.2606 36.046 35.907 36.168 0.024971 28 11 3 0 0 0 0.30562 1 19038 19038 16.149 7.9936 1 2425800 55918 529 37625 38457 64929 64929 0.06095942837077928 RYGSDFYSM 9 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ RYGSDFYSM(1) RYGSDFYSM(46) 0 0 1 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2 ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2346801757812 2 571.234581 1140.45461 0.55984 0.0003198 0.35501 0.0002028 0.91486 0.0005226 571.2347993094568 30.903 0.25174 30.8 30.665 30.917 -0.10269 21 9 3 0 0 0 0.047788 1 16037 16037 45.7 25.246 1 2953200 55919 9864 37626 38458 64930 64930 1584 -0.10999960947515319 RYGSDFYSM 9 Oxidation (M) _RYGSDFYSM(Oxidation (M))_ RYGSDFYSM(1) RYGSDFYSM(96) 0 0 1 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2 ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2354736328125 2 571.234581 1140.45461 0.71874 0.00041057 -1.0596 -0.0006053 -0.34089 -0.00019473 571.2345056986403 35.324 0.40477 31.229 31.075 31.479 -4.0951 54 24 3 0 0 0 0.0082353 2 20450 20450;20586 96.111 59.984 1 26965000 55920 9864 37626 38458 64931;64932 64931 1584 -0.10999960947515319 RYGSDFYSM 9 Unmodified _RYGSDFYSM_ 0 0 0 ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2 ENST00000584350.1_1_17:66246608-66253107:+|nuORF ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2374877929688 2 563.237124 1124.45969 1.3419 0.00075584 -0.24485 -0.00013791 1.0971 0.00061793 563.2370044532794 49.512 0.38499 44.116 43.867 44.252 -5.3961 33 23 2 0 0 0 0.078314 2 30862 30862;30992 38.176 15.027 1 42605000 55921 9864 37626 38459 64933;64934 64933 -0.09755657084883751 RYGSFPIFI 9 Unmodified _RYGSFPIFI_ 0 0 0 nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF;ENSG00000145740|ENST00000396591|SLC30A5 nc|ENSG00000145740|Q8TAD4-2|SLC30A5 nc|ENSG00000145740|Q8TAD4-2|SLC30A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3014526367188 2 550.300384 1098.58622 0.4975 0.00027378 1.1472 0.00063133 1.6447 0.00090511 550.3021860734029 99.092 0.21223 92.917 92.778 92.99 -6.1757 22 12 3 0 0 0 0.13639 1 65882 65882 38.176 11.834 1 58270000 55922 5721 37627 38460 64935 64935 0.040866372025675446 RYGSPINTF 9 Unmodified _RYGSPINTF_ 0 0 0 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 ENSG00000188112|ENST00000341865|C6orf132 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7681274414062 2 527.769448 1053.52434 -0.045035 -2.3768E-05 -0.38508 -0.00020324 -0.43012 -0.000227 527.7694077051981 43.82 0.17717 43.506 43.4 43.577 -0.31361 14 8 2 0 0 0 0.0082353 1 23327 23327 96.111 7.1571 1 18561000 55923 9629 37628 38461 64936 64936 -0.0002771421659417683 RYHCGLAL 8 Unmodified _RYHCGLAL_ 0 0 0 REV__nc|ENSG00000113790|Q08426-2|EHHADH REV__nc|ENSG00000113790|Q08426-2|EHHADH MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7413330078125 2 466.742179 931.469806 0.82331 0.00038427 -1.5398 -0.00071871 -0.71653 -0.00033444 466.7413770168065 59.679 0.36517 53.564 53.255 53.62 -6.1147 32 19 2 0 0 0 0.55032 1 38328 38328 30.225 4.8255 1 50372000 + 55924 18889 37629 38462 64937 64937 0.0013299543099947186 RYHFATGVW 9 Unmodified _RYHFATGVW_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;ENST00000495724.1_1_7:129756322-129757411:+|nuORF ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5256958007812 3 379.526047 1135.55631 1.1653 0.00044228 -0.78971 -0.00029971 0.37564 0.00014257 379.5257281105691 46.963 0.10405 46.93 46.834 46.938 -0.033417 7 4 2 0 0 0 0.51218 1 25283 25283 4.1895 0.59301 1 2056700 55925 4078 37630 38463 64938 64938 -0.0060430174276007165 RYHGYIFGF 9 Unmodified _RYHGYIFGF_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1944885253906 3 387.194298 1158.56106 0.21594 8.3612E-05 0.27988 0.00010837 0.49582 0.00019198 387.19443424000116 61.389 0.28381 61.357 61.231 61.514 -0.032787 30 13 3 0 0 0 0.2546 1 33495 33495 19.362 15.775 1 7956200 55926 716 37631 38464 64939 64939 -0.01187417600021945 RYHGYIFGF 9 Unmodified _RYHGYIFGF_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2884521484375 2 580.287808 1158.56106 0.6941 0.00040278 -0.098562 -5.7194E-05 0.59554 0.00034559 580.2876431878528 61.384 0.22508 61.352 61.231 61.456 -0.032787 16 10 2 0 0 0 0.040683 1 33510 33510 54.774 35.517 1 3715600 55927 716 37631 38464 64940 64940 -0.01187417600021945 RYHGYIFGF 9 Unmodified _RYHGYIFGF_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.1960754394531 3 387.194298 1158.56106 1.5491 0.00059979 -0.25087 -9.7135E-05 1.2982 0.00050265 387.1943587265375 94.551 0.21245 88.375 88.25 88.463 -6.1757 26 11 4 0 0 0 0.11784 1 62607 62607 31.268 21.724 1 14342000 55928 716 37631 38464 64941 64941 -0.01187417600021945 RYHGYIFGF 9 Unmodified _RYHGYIFGF_ 0 0 0 ENSG00000049860|ENST00000261416|HEXB;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF ENSG00000049860|ENST00000261416|HEXB ENSG00000049860|ENST00000261416|HEXB MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2897338867188 2 580.287808 1158.56106 1.1715 0.00067978 -0.015034 -8.7239E-06 1.1564 0.00067106 580.2877967049691 94.558 0.19456 88.382 88.25 88.445 -6.1757 17 10 2 0 0 0 0.025842 1 62613 62613 64.236 44.979 1 15925000 55929 716 37631 38464 64942 64942 -0.01187417600021945 RYHLDDWR 8 Unmodified _RYHLDDWR_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.1976623535156 3 387.524707 1159.55229 1.7227 0.0006676 3.6763 0.0014247 5.3991 0.0020923 387.8591959481382 96.528 0.34064 90.352 90.166 90.506 -6.1757 30 19 2 0 0 0 8.7369 1 63981 63981 6.2058 0.47393 1 12596000 + 55930 19657 37632 38465 64943 64943 -0.021103912365106225 RYHLVQQLF 9 Unmodified _RYHLVQQLF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8935241699219 3 401.892619 1202.65603 0.60424 0.00024284 -0.36907 -0.00014833 0.23517 9.4514E-05 401.8926456393042 52.478 0.29918 52.419 52.289 52.588 -0.058918 33 14 3 0 0 0 0.23158 1 28414 28414 14.405 7.7819 1 4945200 55931 9123 37633 38466 64944 64944 0.06280515871162606 RYHLVQQLF 9 Unmodified _RYHLVQQLF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3355102539062 2 602.33529 1202.65603 0.67118 0.00040428 -0.5595 -0.00033701 0.11168 6.7267E-05 602.3352266004173 52.476 0.19867 52.417 52.328 52.526 -0.058918 19 9 3 0 0 0 0.23158 1 28461 28461 20.454 4.3045 1 1800500 55932 9123 37633 38466 64945 64945 0.06280515871162606 RYHLVQQLF 9 Unmodified _RYHLVQQLF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3348999023438 2 602.33529 1202.65603 0.54793 0.00033004 0.17175 0.00010345 0.71967 0.00043349 602.3359953599733 94.537 0.14577 88.361 88.299 88.445 -6.1757 11 7 2 0 0 0 0.047196 1 62629 62629 46.021 11.619 1 6827800 55933 9123 37633 38466 64946 64946 0.06280515871162606 RYHNVGIL 8 Unmodified _RYHNVGIL_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2760314941406 2 486.274701 970.534849 NaN NaN NaN NaN NaN NaN NaN 49.548 1 49.499 48.999 49.999 -0.048824 0 0 0 0.88073 1 26771 26771 19.439 1.304 1 55934 10576 37634 38467 64947 64947 0.04840313228521609 RYHTGSLAF 9 Unmodified _RYHTGSLAF_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-2|SLC44A4;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000204385|Q53GD3-4|SLC44A4;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.1961364746094 3 351.182169 1050.52468 0.041087 1.4429E-05 1.1116 0.00039039 1.1527 0.00040482 351.1825543924824 34.151 0.1226 34.18 34.103 34.225 0.028931 9 5 2 0 0 0 0.20358 1 17964 17964 6.6304 0 1 1073500 55935 4132;10275;4996 37635 38468 64948 64948 0.001437055032738499 RYHTGSLAF 9 Unmodified _RYHTGSLAF_ 0 0 0 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-2|SLC44A4;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000204385|Q53GD3-4|SLC44A4;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2686767578125 2 526.269616 1050.52468 1.1365 0.0005981 -2.8175 -0.0014828 -1.681 -0.00088467 526.2674772287777 37.925 0.23564 33.556 33.4 33.636 -4.3689 30 13 3 0 0 0 0.023481 1 22274 22274 60.074 20.117 1 11214000 55936 4132;10275;4996 37635 38468 64949 64949 0.001437055032738499 RYHTRTHLPS 10 Unmodified _RYHTRTHLPS_ 0 0 0 REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF REV__ENST00000223145.9_1_7:8008821-8009403:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 634.3372192382812 2 634.336353 1266.65815 NaN NaN NaN NaN NaN NaN NaN 53.564 1 47.76 47.26 48.26 -5.8042 0 0 0 0.3465 1 33870 33870 34.402 11.253 1 + 55937 24770 37636 38469 64950 64950 0.035489446089968624 RYIADHSYF 9 Unmodified _RYIADHSYF_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2796630859375 2 586.28018 1170.54581 -0.078706 -4.6144E-05 1.484 0.00087004 1.4053 0.00082389 586.2810913888907 35.689 0.20161 35.689 35.574 35.776 0 19 8 3 0 0 0 0.19127 1 18882 18882 24.021 8.1734 1 3102600 55938 729 37637 38470 64951 64951 -0.03264329187868498 RYIADHSYF 9 Unmodified _RYIADHSYF_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.1884765625 3 391.189212 1170.54581 -0.13687 -5.3543E-05 0.38209 0.00014947 0.24521 9.5925E-05 391.52369760254146 35.71 0.18073 35.71 35.615 35.796 0 19 8 3 0 0 0 0.28023 1 18922 18922 17.443 9.8337 1 3325900 55939 729 37637 38470 64952 64952 -0.03264329187868498 RYIADHSYF 9 Unmodified _RYIADHSYF_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2796020507812 2 586.28018 1170.54581 -0.53903 -0.00031602 0.15724 9.2185E-05 -0.3818 -0.00022384 586.2802083009085 35.895 0.25237 35.672 35.519 35.772 -0.2224 22 10 3 0 0 0 0.05447 1 18808 18808 43.858 22.112 1 7325900 55940 729 37637 38470 64953 64953 -0.03264329187868498 RYIADHSYF 9 Unmodified _RYIADHSYF_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1896057128906 3 391.189212 1170.54581 -0.43808 -0.00017137 -0.16653 -6.5146E-05 -0.60461 -0.00023652 391.1892934449825 35.892 0.25237 35.67 35.519 35.772 -0.2224 22 10 3 0 0 0 0.032796 1 18824 18824 42.312 23.939 1 5331400 55941 729 37637 38470 64954 64954 -0.03264329187868498 RYIADHSYF 9 Unmodified _RYIADHSYF_ 0 0 0 ENSG00000051009|ENST00000449352|FHIP1B;nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B ENSG00000051009|ENST00000449352|FHIP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.189697265625 3 391.189212 1170.54581 0.61765 0.00024162 -0.37736 -0.00014762 0.24029 9.4E-05 391.18902887914413 40.126 0.33704 35.597 35.487 35.824 -4.5294 42 30 2 0 0 0 0.044011 2 23863 23863;23999 37.075 18.702 1 35805000 55942 729 37637 38470 64955;64956 64955 -0.03264329187868498 RYIAEPKRF 9 Unmodified _RYIAEPKRF_ 0 0 0 REV__ENST00000570049.5_1_16:67354603-67354729:-|nuORF REV__ENST00000570049.5_1_16:67354603-67354729:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8919067382812 3 393.892619 1178.65603 -0.22489 -8.8584E-05 -2.0801 -0.00081933 -2.305 -0.00090792 394.2257227509551 32.87 0.21728 32.711 32.57 32.787 -0.15918 14 8 2 0 0 0 0.54444 1 17133 17133 2.7352 0.45242 1 1262400 + 55943 28963 37638 38471 64957 64957 0.07384515871149233 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7984008789062 2 539.798206 1077.58186 0.056877 3.0702E-05 -0.12906 -6.9668E-05 -0.072185 -3.8965E-05 539.7981048450654 45.389 0.49549 45.389 45.209 45.704 0 95 26 5 0 0 0 0.037253 2 24686 24686;24802 56.177 10.477 1 1385200000 55944 3388 37639 38472 64958;64959 64958 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7982788085938 2 539.798206 1077.58186 -0.09454 -5.1032E-05 -0.64083 -0.00034592 -0.73537 -0.00039695 539.7983070588982 45.613 0.44315 45.289 45.122 45.565 -0.32425 66 25 4 0 0 0 0.082934 1 24391 24391 39.95 8.6814 1 180050000 55945 3388 37639 38472 64960 64960 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7984008789062 2 539.798206 1077.58186 0.032129 1.7343E-05 0.75282 0.00040637 0.78495 0.00042371 539.7984213047233 45.319 0.21168 45.291 45.169 45.381 -0.028015 24 10 3 0 0 0 0.053952 1 24303 24303 47.749 9.5731 1 33198000 55946 3388 37639 38472 64961 64961 0.0461712798901317 RYIANTVEL 9 Unmodified _RYIANTVEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7990112304688 2 539.798206 1077.58186 0.80036 0.00043203 -0.25541 -0.00013787 0.54495 0.00029416 539.7980094453625 51.216 0.6785 45.567 45.248 45.927 -5.649 152 41 5 0 0 0 0.011291 4 32441 32058;32189;32317;32441 85.272 10.477 1 2521400000 55947 3388 37639 38472 64962;64963;64964;64965 64965 0.0461712798901317 RYIAQVKHL 9 Unmodified _RYIAQVKHL_ 0 0 0 ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5609436035156 3 376.560981 1126.66111 -0.27841 -0.00010484 0.33446 0.00012594 0.056044 2.1104E-05 376.5611122466445 21.204 0.16782 21.232 21.138 21.305 0.028357 14 8 2 0 0 0 0.098164 1 10753 10753 33.445 21.27 1 1826200 55948 11349 37640 38473 64966 64966 0.10284819733806216 RYIAQVKHL 9 Unmodified _RYIAQVKHL_ 0 0 0 ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.561767578125 3 376.560981 1126.66111 0.11212 4.2222E-05 -0.12996 -4.8938E-05 -0.017836 -6.7163E-06 376.5609115859399 21.217 0.2013 21.23 21.121 21.322 0.013796 91 30 4 0 0 0 0.033587 1 10811 10811 53.404 32.989 1 22389000 55949 11349 37640 38473 64967 64967 0.10284819733806216 RYIAQVKHL 9 Unmodified _RYIAQVKHL_ 0 0 0 ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5612487792969 3 376.560981 1126.66111 0.76796 0.00028919 0.071097 2.6772E-05 0.83906 0.00031596 376.560979541559 24.533 0.50414 21.695 21.475 21.979 -2.8381 101 28 5 0 0 0 0.011291 3 13382 13270;13382;13493 76.825 44.039 1 172530000 55950 11349 37640 38473 64968;64969;64970 64969 0.10284819733806216 RYIAQVKHL 9 Unmodified _RYIAQVKHL_ 0 0 0 ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF ENST00000267068.5_2_13:33110791-33110824:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3381958007812 2 564.337833 1126.66111 0.44045 0.00024857 -0.85546 -0.00048277 -0.415 -0.0002342 564.3376191155098 24.57 0.3102 21.686 21.506 21.817 -2.8831 33 16 3 0 0 0 0.05483 1 13345 13345 48.346 21.462 1 4537200 55951 11349 37640 38473 64971 64971 0.10284819733806216 RYICMPNVPI 10 Unmodified _RYICMPNVPI_ 0 0 0 REV__CON__P41361 REV__CON__P41361 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.868408203125 3 402.543833 1204.60967 -0.83016 -0.00033418 0.48804 0.00019646 -0.34212 -0.00013772 402.543848057177 28.287 0.27788 28.287 28.109 28.387 0 16 7 3 0 0 0 0.69377 1 14552 14552 1.7423 0 1 1561100 + + 55952 16855 37641 38474 64972 64972 0.01554991653210891 RYIDNSICGF 10 Carbamidomethyl (C) _RYIDNSIC(Carbamidomethyl (C))GF_ RYIDNSIC(1)GF RYIDNSIC(120)GF 0 1 0 nc|ENSG00000140876|P0C024-3|NUDT7 nc|ENSG00000140876|P0C024-3|NUDT7 nc|ENSG00000140876|P0C024-3|NUDT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.79052734375 2 622.790055 1243.56556 0.033669 2.0968E-05 0.35973 0.00022404 0.3934 0.00024501 622.7903935199491 56.033 0.44447 50.112 49.878 50.322 -5.9211 57 26 3 0 0 0 0.00013919 2 35749 35618;35749 118.07 94.048 1 51753000 55953 16234 37642 38475 64973;64974 64974 1022 -0.04648321239415054 RYIDQDSDDQN 11 Unmodified _RYIDQDSDDQN_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.8599548339844 3 456.86026 1367.55895 -0.029137 -1.3311E-05 -1.227 -0.00056058 -1.2562 -0.00057389 457.19416294602985 25.527 0.26821 25.527 25.386 25.654 0 30 12 3 0 0 0 0.7326 1 13064 13064 0.40827 0 1 2320000 55954 9114 37643 38476 64975 64975 -0.11012587657069162 RYIDRIHIF 9 Unmodified _RYIDRIHIF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.5687561035156 3 411.568135 1231.68258 0.082222 3.384E-05 -0.3272 -0.00013466 -0.24498 -0.00010082 411.567990627771 48.758 0.61848 48.714 48.495 49.114 -0.04369 94 30 5 0 0 0 0.029718 3 26246 26246;26350;26517 44.392 35.148 1 281240000 55955 8403 37644 38477 64976;64977;64978 64976 0.07600204762502472 RYIDRIHIF 9 Unmodified _RYIDRIHIF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8491821289062 2 616.848564 1231.68258 NaN NaN NaN NaN NaN NaN NaN 48.761 1 48.717 48.217 49.217 -0.04369 0 0 0 0.049786 1 26323 26323 57.722 40.78 1 55956 8403 37644 38477 64979 64979 0.07600204762502472 RYIDRIHIF 9 Unmodified _RYIDRIHIF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.9025268554688 3 411.568135 1231.68258 1.0217 0.0004205 0.36549 0.00015043 1.3872 0.00057092 411.56832355363207 91.168 0.74188 84.992 84.659 85.401 -6.1757 112 42 3 0 0 0 0.029718 4 60203 60067;60203;60326;60452 44.392 34.628 1 31394000 55957 8403 37644 38477 64980;64981;64982;64983 64981 0.07600204762502472 RYIDRIHIF 9 Unmodified _RYIDRIHIF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.5682067871094 3 411.568135 1231.68258 1.2086 0.00049743 -0.195 -8.0256E-05 1.0136 0.00041717 411.5681360750632 92.127 1.4452 85.952 85.252 86.697 -6.1757 147 85 3 0 0 0 0.01958 7 60950 60577;60706;60824;60950;61074;61198;61321 51.488 38.632 1 46320000 55958 8403 37644 38477 64984;64985;64986;64987;64988;64989;64990 64987 0.07600204762502472 RYIDRIHIFF 10 Unmodified _RYIDRIHIFF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.9256591796875 3 460.59094 1378.75099 1.0965 0.00050505 -0.6703 -0.00030873 0.42623 0.00019632 460.59061417969014 64.126 0.80755 64.116 63.9 64.708 -0.010529 124 40 6 0 0 0 0.5012 2 35025 35025;35128 16.275 11.868 1 284000000 55959 8403 37645 38478 64991;64992 64991 0.07676449342352498 RYIDRIHIFF 10 Unmodified _RYIDRIHIFF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.5910949707031 3 460.59094 1378.75099 0.68131 0.0003138 0.14575 6.7131E-05 0.82706 0.00038094 460.5910811439347 98.608 0.18306 92.433 92.352 92.535 -6.1757 41 13 4 0 0 0 0.32533 1 65404 65404 25.997 15.682 1 187460000 55960 8403 37645 38478 64993 64993 0.07676449342352498 RYIDRIHIFF 10 Unmodified _RYIDRIHIFF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.3814086914062 2 690.382771 1378.75099 0.44764 0.00030904 0.36075 0.00024905 0.80839 0.0005581 690.3827871232976 98.596 0.075951 92.421 92.389 92.465 -6.1757 7 5 2 0 0 0 0.010306 1 65438 65438 90.135 52.364 1 30370000 55961 8403 37645 38478 64994 64994 0.07676449342352498 RYIDTHNRV 9 Unmodified _RYIDTHNRV_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8753662109375 3 391.875628 1172.60505 -0.63454 -0.00024866 0.12017 4.7091E-05 -0.51437 -0.00020157 391.8757017734917 16.718 0.1396 16.718 16.646 16.786 0 87 34 3 0 0 0 0.07087 1 8155 8155 30.703 13.261 1 4836900 55962 5709 37646 38479 64995 64995 0.025655668263198095 RYIDTHNRV 9 Unmodified _RYIDTHNRV_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8756713867188 3 391.875628 1172.60505 -0.5379 -0.00021079 1.1306 0.00044307 0.59273 0.00023228 391.87616733007303 17.166 0.10907 17.167 17.113 17.222 0.0010529 56 35 3 0 0 0 0.15471 1 8512 8512 20.581 13.951 1 1018200 55963 5709 37646 38479 64996 64996 0.025655668263198095 RYIDTHNRV 9 Unmodified _RYIDTHNRV_ 0 0 0 ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF ENSG00000145632|ENST00000274289|PLK2 ENSG00000145632|ENST00000274289|PLK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8755493164062 3 391.875628 1172.60505 -0.055357 -2.1693E-05 -2.9259 -0.0011466 -2.9812 -0.0011683 391.87577889943935 16.905 0.25438 16.91 16.844 17.099 0.0050564 40 26 2 0 0 0 0.28023 1 8495 8495 12.873 4.9272 1 740880 55964 5709 37646 38479 64997 64997 0.025655668263198095 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2235717773438 3 409.224034 1224.65027 -0.14119 -5.778E-05 -0.38926 -0.00015929 -0.53045 -0.00021707 409.2235614270033 43.414 0.18164 43.414 43.28 43.461 0 15 8 2 0 0 0 0.013041 1 23575 23575 57.249 30.161 1 4638600 55965 4864 37647 38480 64998 64998 0.04693372568817722 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.333740234375 2 613.332413 1224.65027 0.11796 7.2349E-05 -0.32339 -0.00019835 -0.20543 -0.000126 613.3322383594889 43.427 0.16105 43.427 43.3 43.461 0 13 7 2 0 0 0 0.10247 1 23582 23582 32.786 0 1 5328700 55966 4864 37647 38480 64999 64999 0.04693372568817722 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.3323974609375 2 613.332413 1224.65027 0.21822 0.00013384 -0.57775 -0.00035435 -0.35953 -0.00022051 613.3323148200591 43.616 0.13093 43.306 43.207 43.338 -0.31039 7 5 2 0 0 0 0.036857 1 23229 23229 51.63 11.68 1 17008000 55967 4864 37647 38480 65000 65000 0.04693372568817722 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2245788574219 3 409.224034 1224.65027 NaN NaN NaN NaN NaN NaN NaN 43.63 1 43.32 42.82 43.82 -0.31039 0 0 0 0.017438 1 23221 23221 65.474 42.699 1 55968 4864 37647 38480 65001 65001 0.04693372568817722 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.33203125 2 613.332413 1224.65027 0.55675 0.00034147 -0.18333 -0.00011244 0.37342 0.00022903 613.3316145903453 49.013 0.19408 43.617 43.523 43.717 -5.3961 14 12 2 0 0 0 0.008513 1 30577 30577 99.755 14.114 1 31328000 55969 4864 37647 38480 65002 65002 0.04693372568817722 RYIEELQKF 9 Unmodified _RYIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 nc|ENSG00000136828|Q5JS13-4|RALGPS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 409.224034 1224.65027 0.14577 5.9653E-05 -0.0040216 -1.6457E-06 0.14175 5.8008E-05 409.2240705326917 43.594 0.1319 43.284 43.185 43.317 -0.31039 -0.065045 0.00035251 NaN 57.249 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 10525000 55970 4864 37647 38480 0.04693372568817722 RYIEEPLE 8 Unmodified _RYIEEPLE_ 0 0 0 ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B ENSG00000177558|ENST00000324675|FAM187B MSMS AL20221201_MKP_PDAC_01 4 350.1823120117188 3 350.181835 1047.52368 NaN NaN NaN NaN NaN NaN NaN 42.642 1 37.958 37.458 38.458 -4.6846 0 0 0 0.80403 1 25783 25783 18.146 4.2403 1 55971 8692 37648 38481 65003 65003 0.0018144634370855783 RYIEFHSQSGF 11 Unmodified _RYIEFHSQSGF_ 0 0 0 nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.554931640625 3 457.554443 1369.6415 0.35182 0.00016098 1.8977 0.00086832 2.2496 0.0010293 457.55563720435777 40.354 0.37305 40.057 39.804 40.177 -0.29716 40 17 4 0 0 0 0.43662 1 21370 21370 16.137 14.231 1 6431100 55972 3161 37649 38482 65004 65004 -0.02853601067636191 RYIEFHSQSGF 11 Unmodified _RYIEFHSQSGF_ 0 0 0 nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.5546569824219 3 457.554443 1369.6415 0.40417 0.00018493 0.019606 8.9709E-06 0.42377 0.0001939 457.5544582995974 45.28 0.29137 40.325 40.146 40.437 -4.9549 34 19 2 0 0 0 0.018218 1 27726 27726 42.862 28.644 1 18677000 55973 3161 37649 38482 65005 65005 -0.02853601067636191 RYIENPYLI 9 Unmodified _RYIENPYLI_ 0 0 0 nc|ENSG00000131044|Q3SXZ7-3|TTLL9;nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8207397460938 2 590.821681 1179.62881 0.2607 0.00015402 0.96633 0.00057093 1.227 0.00072495 590.8221417321155 58.322 0.20002 57.831 57.701 57.901 -0.49079 14 9 2 0 0 0 0.38785 1 31721 31721 13.042 0.51092 1 1198700 55974 4292 37650 38483 65006 65006 0.046179875401321624 RYIERAQQEK 10 Unmodified _RYIERAQQEK_ 0 0 0 ENSG00000023892|ENST00000316637|DEF6 ENSG00000023892|ENST00000316637|DEF6 ENSG00000023892|ENST00000316637|DEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.85546875 2 660.854575 1319.6946 0.99659 0.0006586 1.8572 0.0012273 2.8538 0.0018859 661.3574650151004 49.418 0.22108 49.372 49.253 49.474 -0.046028 17 10 2 0 0 0 0.36296 1 26704 26704 23.79 3.3362 1 2286800 55975 548 37651 38484 65007 65007 0.04753776715051572 RYIEREEE 8 Unmodified _RYIEREEE_ 0 0 0 REV__nc|ENSG00000079387|Q9P0U3-2|SENP1 REV__nc|ENSG00000079387|Q9P0U3-2|SENP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.3003540039062 2 562.272552 1122.53055 0.78526 0.00044153 4.0359 0.0022693 4.8211 0.0027108 562.7772524395024 44.708 0.029621 39.856 39.834 39.863 -4.852 4 2 2 0 0 0 8.7369 1 27309 27309 18.135 2.2878 1 4078600 + 55976 17648 37652 38485 65008 65008 -0.025812407757030087 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-5|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2248840332031 3 391.225598 1170.65496 0.47668 0.00018649 -0.53189 -0.00020809 -0.055213 -2.1601E-05 391.22523048967247 58.609 0.60588 58.548 58.274 58.88 -0.060719 73 30 5 0 0 0 0.098164 1 31876 31876 33.445 27.253 1 75164000 55977 16134 37653 38486 65009 65009 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-5|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3348388671875 2 586.334759 1170.65496 0.82049 0.00048108 -0.4414 -0.00025881 0.37909 0.00022227 586.3344542621792 58.577 0.38799 58.516 58.394 58.782 -0.060719 59 19 4 0 0 0 0.0094097 2 31879 31879;31992 92.822 52.865 1 81824000 55978 16134 37653 38486 65010;65011 65010 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-5|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2258605957031 3 391.225598 1170.65496 1.5979 0.00062512 -0.50104 -0.00019602 1.0968 0.00042911 391.2251934363157 90.809 0.73578 84.634 84.203 84.939 -6.1757 138 43 4 0 0 0 0.012668 4 60135 59749;59874;60003;60135 72.968 62.168 1 140100000 55979 16134 37653 38486 65012;65013;65014;65015 65015 0.07646301502268216 RYIFAKNLF 9 Unmodified _RYIFAKNLF_ 0 0 0 nc|ENSG00000114956|Q16854-5|DGUOK;nc|ENSG00000114956|Q16854-3|DGUOK;ENSG00000114956|ENST00000264093|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK nc|ENSG00000114956|Q16854-5|DGUOK MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3353271484375 2 586.334759 1170.65496 1.2506 0.00073325 -0.067569 -3.9618E-05 1.183 0.00069363 586.3345613778031 90.813 0.70805 84.637 84.203 84.911 -6.1757 122 41 4 0 0 0 0.011671 4 60018 59761;59892;60018;60151 85.357 45.399 1 146830000 55980 16134 37653 38486 65016;65017;65018;65019 65018 0.07646301502268216 RYIFASNLY 9 Unmodified _RYIFASNLY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8009033203125 2 573.800749 1145.58694 0.42948 0.00024644 0.12983 7.4496E-05 0.55931 0.00032093 573.8011444259674 59.186 0.30379 59.129 58.925 59.229 -0.057278 39 14 4 0 0 0 0.024882 1 32280 32280 58.679 29.597 1 15997000 55981 6432 37654 38487 65020 65020 0.01997431851600595 RYIFASNLY 9 Unmodified _RYIFASNLY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.2576904296875 2 573.800749 1145.58694 0.78105 0.00044817 1.2036 0.00069066 1.9847 0.0011388 573.8008856819022 65.066 0.35745 58.891 58.752 59.11 -6.1757 30 19 2 0 0 0 0.13704 1 42289 42289 26.268 12.362 1 10925000 55982 6432 37654 38487 65021 65021 0.01997431851600595 RYIFENFSQ 9 Unmodified _RYIFENFSQ_ 0 0 0 REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.8659362792969 3 401.864617 1202.57202 NaN NaN NaN NaN NaN NaN NaN 44.364 1 39.512 39.012 40.012 -4.852 0 0 0 0.6557 1 27072 27072 7.1017 2.9122 1 + 55983 26029 37655 38488 65022 65022 -0.021160600163966592 RYIFNSSVQE 10 Unmodified _RYIFNSSVQE_ 0 0 0 ENSG00000123473|ENST00000371877|STIL;nc|ENSG00000123473|Q15468|STIL ENSG00000123473|ENST00000371877|STIL ENSG00000123473|ENST00000371877|STIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8750915527344 3 414.875293 1241.60405 -0.64152 -0.00026615 0.4766 0.00019773 -0.16492 -6.8423E-05 414.8756077830905 26.77 0.2097 26.77 26.614 26.824 0 18 9 3 0 0 0 0.69385 1 13769 13769 3.5871 0.5148 1 1466000 55984 3712 37656 38489 65023 65023 -0.007086923332508377 RYIFRHHLL 9 Unmodified _RYIFRHHLL_ 0 0 0 REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF REV__ENST00000471102.1_1_10:46281927-46282167:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.9111328125 3 418.912125 1253.71454 NaN NaN NaN NaN NaN NaN NaN 45.96 1 45.932 45.432 46.432 -0.028011 0 0 0 0.7453 1 24712 24712 4.897 0 1 + 55985 27489 37657 38490 65024 65024 0.09783617236325881 RYIGVSYPLC 10 Unmodified _RYIGVSYPLC_ 0 0 0 ADRA1A|p.R133C|1|0.24|ENSG00000120907|chr8:26864573-26864573|G/A|missense_variant ADRA1A|p.R133C|1|0.24|ENSG00000120907|chr8:26864573-26864573|G/A|missense_variant ADRA1A|p.R133C|1|0.24|ENSG00000120907|chr8:26864573-26864573|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8690795898438 3 390.870715 1169.59032 -0.0064611 -2.5255E-06 -2.3384 -0.00091402 -2.3449 -0.00091654 390.8697803346245 45.521 0.26086 45.493 45.381 45.642 -0.028011 30 13 3 0 0 0 0.65023 1 24437 24437 8.4443 0.83535 1 16126000 55986 11 37658 38491 65025 65025 0.012303586339612593 RYIHLENLL 9 Unmodified _RYIHLENLL_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8926086425781 3 390.892507 1169.65569 0.52484 0.00020515 0.24043 9.3984E-05 0.76527 0.00029914 390.8924500473752 57.296 0.27818 56.807 56.645 56.923 -0.48974 24 12 3 0 0 0 0.46501 1 31162 31162 6.1918 2.3155 1 2047800 55987 3655 37659 38492 65026 65026 0.07765096151319995 RYIHLENLL 9 Unmodified _RYIHLENLL_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2761840820312 2 585.835123 1169.65569 0.41257 0.0002417 -0.79313 -0.00046464 -0.38056 -0.00022294 586.3360511018304 57.307 0.23337 56.817 56.668 56.901 -0.48974 19 10 2 0 0 0 0.17729 1 31140 31140 21.537 5.3879 1 2462900 55988 3655 37659 38492 65027 65027 0.07765096151319995 RYIHLENLL 9 Unmodified _RYIHLENLL_ 0 0 0 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 ENSG00000122692|ENST00000397149|SMU1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.27587890625 2 585.835123 1169.65569 0.97327 0.00057018 0.082327 4.823E-05 1.0556 0.00061841 585.834803900353 56.935 0.15487 56.866 56.76 56.915 -0.068737 10 7 2 0 0 0 0.16524 1 30999 30999 26.268 7.0112 1 2292600 55989 3655 37659 38492 65028 65028 0.07765096151319995 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2189025878906 3 430.219283 1287.63602 -0.6076 -0.0002614 0.33048 0.00014218 -0.27712 -0.00011922 430.2194404450236 27.572 0.27296 27.572 27.427 27.7 0 22 12 2 0 0 0 0.13391 1 14195 14195 35.612 28.989 1 12725000 55990 1064 37660 38493 65029 65029 0.003707201405404703 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8252563476562 2 644.825286 1287.63602 -0.78715 -0.00050757 -0.28928 -0.00018653 -1.0764 -0.00069411 644.8250370858511 27.604 0.25188 27.604 27.449 27.7 0 25 11 3 0 0 0 0.25982 1 14242 14242 29.841 21.685 1 3368300 55991 1064 37660 38493 65030 65030 0.003707201405404703 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.2185668945312 3 430.219283 1287.63602 0.4822 0.00020745 -0.57186 -0.00024602 -0.089658 -3.8573E-05 430.2189975553549 27.477 0.28009 27.431 27.266 27.546 -0.046408 22 13 2 0 0 0 0.16361 1 14145 14145 27.088 18.337 1 10121000 55992 1064 37660 38493 65031 65031 0.003707201405404703 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3270874023438 2 644.825286 1287.63602 0.68179 0.00043963 0.1428 9.208E-05 0.82459 0.00053171 644.8255522766457 31.218 0.31013 27.523 27.276 27.586 -3.6958 24 15 2 0 0 0 2.4604E-05 1 17569 17569 125.04 95.956 1 48069000 55993 1064 37660 38493 65032 65032 0.003707201405404703 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2193603515625 3 430.219283 1287.63602 0.93227 0.00040108 -0.011536 -4.9632E-06 0.92073 0.00039612 430.21916100744437 31.161 0.34975 27.465 27.254 27.604 -3.6958 29 17 2 0 0 0 0.077785 2 17592 17592;17709 37.771 29.02 1 55966000 55994 1064 37660 38493 65033;65034 65033 0.003707201405404703 RYIHPQQEAF 10 Unmodified _RYIHPQQEAF_ 0 0 0 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MSMS AL20221201_MKP_PDAC_01 4 644.8264770507812 2 644.825286 1287.63602 NaN NaN NaN NaN NaN NaN NaN 31.27 1 27.575 27.075 28.075 -3.6958 0 0 0 1.4868E-06 1 17696 17696 125.04 102.3 1 55995 1064 37660 38493 65035 65035 0.003707201405404703 RYIHQWEEI 9 Unmodified _RYIHQWEEI_ 0 0 0 ENSG00000138622|ENST00000261917|HCN4;ENSG00000099822|ENST00000251287|HCN2;ENSG00000143630|ENST00000368358|HCN3;ENST00000496230.5_1_1:155247534-155253965:+|nuORF;ENSG00000164588|ENST00000303230|HCN1 ENSG00000138622|ENST00000261917|HCN4;ENSG00000164588|ENST00000303230|HCN1 ENSG00000164588|ENST00000303230|HCN1 MSMS AL20221201_MKP_PDAC_01 4 425.2161560058594 3 425.21565 1272.62512 NaN NaN NaN NaN NaN NaN NaN 28.251 1 25.102 24.602 25.602 -3.1482 0 0 0 0.7453 1 15742 15742 4.897 0 1 55996 5072;7209 37661 38494 65036 65036 -0.00028682233710242144 RYIIGQNHLFF 11 Unmodified _RYIIGQNHLFF_ 0 0 0 REV__nc|ENSG00000126583|P05129-2|PRKCG REV__nc|ENSG00000126583|P05129-2|PRKCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.9234924316406 3 469.922578 1406.7459 0.24475 0.00011501 0.47575 0.00022357 0.7205 0.00033858 469.92284491567995 78.416 0.24912 78.469 78.327 78.576 0.052452 22 10 3 0 0 0 0.45445 1 43307 43307 18.721 11.684 1 2786400 + 55997 19552 37662 38495 65037 65037 0.058801454797276165 RYIIKKDFF 9 Unmodified _RYIIKKDFF_ 0 0 0 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.9069519042969 3 410.572886 1228.69683 -0.402 -0.00016505 0.13123 5.3878E-05 -0.27078 -0.00011117 410.57301553652974 41.802 0.18065 41.8 41.721 41.902 -0.0017929 22 8 4 0 0 0 0.01861 1 22369 22369 64.927 54.776 1 10887000 55998 1368 37663 38496 65038 65038 0.09162857190767681 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.8314208984375 2 553.832049 1105.64954 -0.13695 -7.5846E-05 0.32693 0.00018107 0.18999 0.00010522 553.832062339389 41.09 0.25639 41.09 41.005 41.261 0 31 12 3 0 0 0 0.044011 1 22125 22125 47.749 13.347 1 15747000 55999 2972 37664 38497 65039 65039 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.5571594238281 3 369.557125 1105.64954 -0.53699 -0.00019845 0.2323 8.5847E-05 -0.30469 -0.0001126 369.5572609400839 41.118 0.21626 41.118 41.024 41.241 0 21 10 3 0 0 0 0.34999 1 22164 22164 14.405 8.2135 1 4404500 56000 2972 37664 38497 65040 65040 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.832275390625 2 553.832049 1105.64954 0.092043 5.0977E-05 0.14791 8.1919E-05 0.23996 0.0001329 553.8320537790754 41.407 0.34118 41.104 40.946 41.287 -0.30304 57 15 5 0 0 0 0.028475 2 21897 21897;22010 56.177 10.477 1 145920000 56001 2972 37664 38497 65041;65042 65041 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.557373046875 3 369.557125 1105.64954 -0.10244 -3.7859E-05 0.041967 1.5509E-05 -0.060478 -2.235E-05 369.55717529171557 41.41 0.31654 41.107 40.946 41.262 -0.30304 43 14 4 0 0 0 0.03568 1 21923 21923 47.594 24.936 1 40799000 56002 2972 37664 38497 65043 65043 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8326416015625 2 553.832049 1105.64954 0.26276 0.00014552 0.53107 0.00029412 0.79382 0.00043965 553.8322258019975 41.108 0.36744 41.107 40.931 41.298 -0.0017929 55 17 5 0 0 0 0.023481 3 21892 21873;21892;22002 60.074 14.374 1 60031000 56003 2972 37664 38497 65044;65045;65046 65045 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5571594238281 3 369.557125 1105.64954 0.094798 3.5033E-05 0.58931 0.00021778 0.68411 0.00025282 369.55722782296795 41.109 0.2909 41.107 40.95 41.241 -0.0017929 42 13 4 0 0 0 0.1773 1 21917 21917 29.841 21.396 1 18990000 56004 2972 37664 38497 65047 65047 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5574340820312 3 369.557125 1105.64954 1.0908 0.0004031 0.093979 3.473E-05 1.1847 0.00043783 369.5571597954867 46.32 0.38414 41.239 41.009 41.393 -5.0805 67 26 3 0 0 0 0.10734 1 28624 28624 36.506 15.925 1 85151000 56005 2972 37664 38497 65048 65048 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.832275390625 2 553.832049 1105.64954 0.52934 0.00029316 -0.29579 -0.00016382 0.23355 0.00012935 553.8318266743883 46.304 0.42838 41.224 41.009 41.437 -5.0805 95 31 4 0 0 0 0.094149 1 28647 28647 34.402 6.7729 1 386770000 56006 2972 37664 38497 65049 65049 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8328857421875 2 553.832049 1105.64954 0.46964 0.0002601 0.80081 0.00044351 1.2704 0.00070361 553.8324930111849 76.862 2.7535 70.686 68.416 71.17 -6.1757 250 150 3 0 0 0 0.028475 7 49666 49266;49400;49666;49917;50154;50276;50393 56.177 14.211 1 66182000 56007 2972 37664 38497 65050;65051;65052;65053;65054;65055;65056 65052 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8920593261719 3 369.557125 1105.64954 0.9033 0.00033382 -0.13033 -4.8165E-05 0.77297 0.00028566 369.5571465314513 76.786 0.89899 70.61 70.201 71.1 -6.1757 89 49 2 0 0 0 0.05447 1 50063 50063 40.239 17.581 1 17598000 56008 2972 37664 38497 65057 65057 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 369.5574035644531 3 369.557125 1105.64954 NaN NaN NaN NaN NaN NaN NaN 76.11 1 69.934 69.434 70.434 -6.1757 0 0 0 0.41346 1 49787 49787 23.79 13.639 1 56009 2972 37664 38497 65058 65058 0.10094577919812764 RYIKALETL 9 Unmodified _RYIKALETL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 369.5575866699219 3 369.557125 1105.64954 NaN NaN NaN NaN NaN NaN NaN 76.305 1 70.13 69.63 70.63 -6.1757 0 0 0 0.15549 1 49913 49913 40.239 8.9709 1 56010 2972 37664 38497 65059 65059 0.10094577919812764 RYIKTSAHY 9 Unmodified _RYIKTSAHY_ 0 0 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MSMS AL20221201_MKP_PDAC_01 4 380.2060852050781 3 380.204974 1137.59309 NaN NaN NaN NaN NaN NaN NaN 16.922 1 14.365 13.865 14.865 -2.557 0 0 0 0.6306 1 8805 8805 11.495 7.9077 1 56011 10896;775 37665 38498 65060 65060 0.029799500831359182 RYIKYYLI 8 Unmodified _RYIKYYLI_ 0 0 0 REV__ENSG00000179097|ENST00000319595|HTR1F REV__ENSG00000179097|ENST00000319595|HTR1F MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8797302246094 3 377.890215 1130.64882 1.4187 0.00053611 -2.3053 -0.00087116 -0.88664 -0.00033505 377.88915992928446 42.832 0.37094 38.148 37.982 38.353 -4.6846 38 23 2 0 0 0 0.71527 1 25825 25825 15.847 2.3285 1 16162000 + 56012 23086 37666 38499 65061 65061 0.08871783270728884 RYIKYYLI 8 Unmodified _RYIKYYLI_ 0 0 0 REV__ENSG00000179097|ENST00000319595|HTR1F REV__ENSG00000179097|ENST00000319595|HTR1F MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.2113647460938 3 377.890215 1130.64882 1.4187 0.00053611 -2.3053 -0.00087116 -0.88664 -0.00033505 377.88915992928446 42.832 0.37094 38.148 37.982 38.353 -4.6846 38 23 2 0 0 0 8.7369 1 25815 25815 25.399 1.6095 1 16162000 + 56013 23086 37666 38499 65062 65062 0.08871783270728884 RYILDGSGYF 10 Unmodified _RYILDGSGYF_ 0 0 0 nc|ENSG00000182551|Q9BV57-2|ADI1;ENSG00000182551|ENST00000327435|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 nc|ENSG00000182551|Q9BV57-2|ADI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7963256835938 2 595.795663 1189.57677 NaN NaN NaN NaN NaN NaN NaN 62.922 1 62.435 61.935 62.935 -0.48617 0 0 0 0.36315 1 34309 34309 33.445 3.2201 1 56014 9065 37667 38500 65063 65063 -0.010431758736103802 RYILEPFFI 9 Unmodified _RYILEPFFI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3369140625 2 599.336967 1196.65938 0.40829 0.0002447 -0.13111 -7.8576E-05 0.27719 0.00016613 599.336678207038 96.666 0.32668 96.361 96.189 96.516 -0.30473 55 17 4 0 0 0 0.1685 2 52824 52725;52824 26.268 15.444 1 3572800 56015 6085 37668 38501 65064;65065 65065 0.0689176592518379 RYILEPFFI 9 Unmodified _RYILEPFFI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3367309570312 2 599.336967 1196.65938 0.016331 9.7875E-06 -0.20734 -0.00012426 -0.19101 -0.00011448 599.3367480506491 100.67 0.26951 94.497 94.33 94.599 -6.1757 62 18 4 0 0 0 0.009483 2 67276 67276;67446 81.89 11.463 1 2489900000 56016 6085 37668 38501 65066;65067 65066 0.0689176592518379 RYILNYGRN 9 Unmodified _RYILNYGRN_ 0 0 0 REV__nc|ENSG00000170088|Q8IY95-2|TMEM192 REV__nc|ENSG00000170088|Q8IY95-2|TMEM192 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.212646484375 3 390.21224 1167.61489 NaN NaN NaN NaN NaN NaN NaN 15.019 1 15.019 14.519 15.519 0 0 0 0 0.84737 1 7198 7198 0.96228 0 1 + 56017 22445 37669 38502 65068 65068 0.03778754831705555 RYILPVYGI 9 Unmodified _RYILPVYGI_ 0 0 0 ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3253173828125 2 547.32386 1092.63317 1.325 0.00072523 -0.44751 -0.00024493 0.87754 0.0004803 547.3238962156203 95.728 0.2677 89.552 89.446 89.714 -6.1757 26 16 2 0 0 0 0.2546 1 63481 63481 26.884 26.884 1 13751000 56018 9147 37670 38503 65069 65069 0.0905549675369457 RYINDSLIET 10 Unmodified _RYINDSLIET_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5464782714844 3 408.547065 1222.61937 -0.76634 -0.00031309 0.68643 0.00028044 -0.079908 -3.2646E-05 408.547354213012 27.725 0.187 27.725 27.617 27.804 0 18 8 3 0 0 0 0.48505 1 14279 14279 10.899 2.1472 1 3054700 + 56019 23320 37671 38504 65070 65070 0.016961744639502285 RYINDSLIET 10 Unmodified _RYINDSLIET_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5475463867188 3 408.547065 1222.61937 -0.55428 -0.00022645 1.4242 0.00058184 0.8699 0.00035539 408.5476053970583 28.915 0.22137 28.915 28.801 29.022 0 34 10 4 0 0 0 0.20962 1 14943 14943 22.775 12.46 1 4740800 + 56020 23320 37671 38504 65071 65071 0.016961744639502285 RYINDSLIET 10 Unmodified _RYINDSLIET_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 408.547065 1222.61937 -0.55428 -0.00022645 1.4242 0.00058184 0.8699 0.00035539 408.5476053970583 28.915 0.22137 28.915 28.801 29.022 0 -0.088781 0.00023644 NaN 22.775 34 10 4 NaN NaN NaN NaN 0 NaN NaN 0 4740800 + 56021 23320 37671 38504 0.016961744639502285 RYINDSLIET 10 Unmodified _RYINDSLIET_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 408.547065 1222.61937 0.5819 0.00023773 -0.49789 -0.00020341 0.084011 3.4322E-05 408.54684407224863 32.948 0.22742 29.092 28.945 29.172 -3.8562 0.088781 -0.0021193 NaN 22.775 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 17509000 + 56022 23320 37671 38504 0.016961744639502285 RYINFKMANL 10 Oxidation (M) _RYINFKM(Oxidation (M))ANL_ RYINFKM(1)ANL RYINFKM(42)ANL 0 0 1 ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3414306640625 2 643.339715 1284.66488 0.55706 0.00035838 0.46355 0.00029822 1.0206 0.0006566 643.3405391883836 40.536 0.23237 40.541 40.382 40.614 0.0050583 24 10 3 0 0 0 0.13391 1 21583 21583 41.84 29.599 1 3959000 56023 2231 37672 38505 65072 65072 384 0.03393121445355973 RYINKALECF 10 Carbamidomethyl (C) _RYINKALEC(Carbamidomethyl (C))F_ RYINKALEC(1)F RYINKALEC(63)F 0 1 0 NIPA1|p.D256N|1|0.05|ENSG00000170113|chr15:22824015-22824015|G/A|missense_variant;nc|ENSG00000170113|Q7RTP0-2|NIPA1;ENSG00000170113|ENST00000337435|NIPA1 NIPA1|p.D256N|1|0.05|ENSG00000170113|chr15:22824015-22824015|G/A|missense_variant NIPA1|p.D256N|1|0.05|ENSG00000170113|chr15:22824015-22824015|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8394165039062 2 657.337172 1312.65979 0.30576 0.00020099 -0.082911 -5.4501E-05 0.22285 0.00014649 657.33679765704 46.351 0.38142 41.271 40.978 41.359 -5.0805 37 25 2 0 0 0 0.039874 1 28535 28535 63.227 25.052 1 19807000 56024 7950 37673 38506 65073 65073 777 0.01596817582708354 RYINNPLLI 9 Unmodified _RYINNPLLI_ 0 0 0 ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.3317260742188 2 558.332216 1114.64988 0.32376 0.00018077 0.58099 0.00032439 0.90475 0.00050515 558.3329236552753 65.568 0.21578 65.084 64.979 65.195 -0.48428 14 9 2 0 0 0 0.2143 1 35831 35831 21.747 4.8044 1 771090 56025 3455 37674 38507 65074 65074 0.0971399763966474 RYINNPLLI 9 Unmodified _RYINNPLLI_ 0 0 0 ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3328857421875 2 558.332216 1114.64988 0.90233 0.0005038 0.094256 5.2626E-05 0.99659 0.00055643 558.3323214671399 65.067 0.38693 65.067 64.895 65.282 1.5259E-05 66 18 5 0 0 0 0.047196 2 35623 35623;35728 46.021 21.347 1 38343000 56026 3455 37674 38507 65075;65076 65075 0.0971399763966474 RYINNPLLI 9 Unmodified _RYINNPLLI_ 0 0 0 ENSG00000119685|ENST00000298832|TTLL5;ENST00000555422.5_1_14:76165571-76198516:+|nuORF;nc|ENSG00000119685|Q6EMB2-3|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3326416015625 2 558.332216 1114.64988 1.3484 0.00075284 -0.2423 -0.00013529 1.1061 0.00061755 558.3316560894717 86.497 1.042 80.321 79.709 80.751 -6.1757 110 56 3 0 0 0 0.042911 3 56889 56889;57023;57160 48.346 18.121 1 26123000 56027 3455 37674 38507 65077;65078;65079 65077 0.0971399763966474 RYIPEYEYF 9 Unmodified _RYIPEYEYF_ 0 0 0 REV__ENSG00000169255|ENST00000320474|B3GALNT1 REV__ENSG00000169255|ENST00000320474|B3GALNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2051086425781 3 427.20464 1278.59209 -0.089798 -3.8362E-05 0.63867 0.00027284 0.54888 0.00023448 427.53908513788815 37.625 0.21023 37.353 37.23 37.44 -0.27133 20 8 3 0 0 0 0.51218 1 19774 19774 4.1895 0 1 5613300 + 56028 22390 37675 38508 65080 65080 -0.036063090764628214 RYIPHPFLV 9 Unmodified _RYIPHPFLV_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3316650390625 2 571.329476 1140.6444 0.16517 9.4367E-05 0.31049 0.00017739 0.47566 0.00027176 571.3293319918789 53.125 0.25795 53.062 52.919 53.177 -0.063423 25 12 3 0 0 0 0.070838 1 28811 28811 39.957 18.211 1 3197500 56029 2472 37676 38509 65081 65081 0.07970318847810631 RYIPLIVDI 9 Unmodified _RYIPLIVDI_ 0 0 0 ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENSG00000107863|ENST00000396432|ARHGAP21 ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3375244140625 2 551.336967 1100.65938 1.5324 0.00084486 -0.84758 -0.0004673 0.68482 0.00037756 551.3364990660376 82.182 0.26914 82.244 82.125 82.394 0.062004 19 10 3 0 0 0 0.0083938 1 45476 45476 108 64.139 1 5989600 56030 2523 37677 38510 65082 65082 0.11307765925175772 RYIPLIVDI 9 Unmodified _RYIPLIVDI_ 0 0 0 ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF ENSG00000107863|ENST00000396432|ARHGAP21 ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3370361328125 2 551.336967 1100.65938 -0.12046 -6.6413E-05 0.41001 0.00022605 0.28955 0.00015964 551.3373209357746 98.897 0.14143 92.722 92.637 92.778 -6.1757 16 10 2 0 0 0 0.0082485 1 65696 65696 96.285 52.426 1 63226000 56031 2523 37677 38510 65083 65083 0.11307765925175772 RYIPLKVALF 10 Unmodified _RYIPLKVALF_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.382568359375 2 610.381709 1218.74886 0.77661 0.00047403 0.49166 0.0003001 1.2683 0.00077413 610.3819723881437 68.949 0.30569 68.975 68.818 69.123 0.025154 34 14 3 0 0 0 0.18021 1 37880 37880 36.127 16.87 1 4528300 56032 1972 37678 38511 65084 65084 0.14824020604532961 RYIPLKVALF 10 Unmodified _RYIPLKVALF_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3833618164062 2 610.381709 1218.74886 1.227 0.00074896 -0.5835 -0.00035616 0.64354 0.0003928 610.38133129176 96.464 0.25601 90.288 90.166 90.422 -6.1757 34 14 3 0 0 0 0.095098 1 63922 63922 47.749 22.349 1 35170000 56033 1972 37678 38511 65085 65085 0.14824020604532961 RYIPLKVALF 10 Unmodified _RYIPLKVALF_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.25732421875 3 407.256898 1218.74886 1.4298 0.00058229 0.20428 8.3192E-05 1.6341 0.00066548 407.2569300044165 96.465 0.25388 90.289 90.15 90.404 -6.1757 22 14 2 0 0 0 0.046375 1 63923 63923 51.488 37.27 1 24928000 56034 1972 37678 38511 65086 65086 0.14824020604532961 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2780456542969 2 505.276909 1008.53927 0.99407 0.00050228 -0.64134 -0.00032406 0.35273 0.00017823 505.2766082867317 47.675 0.33653 47.675 47.494 47.831 0 45 15 4 0 0 0 0.044011 2 26072 26072;26178 47.749 11.622 1 15290000 56035 801 37679 38512 65087;65088 65087 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2774963378906 2 505.276909 1008.53927 0.15106 7.6327E-05 -0.58891 -0.00029756 -0.43785 -0.00022123 505.27650611931784 47.937 0.42353 47.585 47.387 47.81 -0.3526 84 20 5 0 0 0 0.018301 2 25645 25645;25744 65.235 29.108 1 1083200000 56036 801 37679 38512 65089;65090 65089 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2777099609375 2 505.276909 1008.53927 0.63697 0.00032185 -1.1091 -0.00056041 -0.47215 -0.00023856 505.27629168450756 47.669 0.81231 47.63 47.411 48.224 -0.038643 126 39 6 0 0 0 0.07087 2 25615 25615;25715 39.95 10.868 1 1559499999.9999998 56037 801 37679 38512 65091;65092 65091 0.035337776513983954 RYIPTAAAF 9 Unmodified _RYIPTAAAF_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000498837.1_1_3:127786720-127788502:+|nuORF ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.27783203125 2 505.276909 1008.53927 1.1445 0.00057826 -0.94234 -0.00047614 0.20212 0.00010212 505.2763292647132 53.615 1.2649 47.811 47.419 48.684 -5.8042 288 76 5 0 0 0 0.06294 3 34195 33922;34050;34195 41.84 9.1552 1 5695600000 56038 801 37679 38512 65093;65094;65095 65095 0.035337776513983954 RYIQLPVTHLF 11 Unmodified _RYIQLPVTHLF_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.9349060058594 3 462.934595 1385.78196 0.15158 7.0174E-05 0.61238 0.00028349 0.76397 0.00035367 462.9347511933049 72.62 0.31686 72.661 72.465 72.782 0.041733 24 14 3 0 0 0 0.4121 1 40006 40006 20.871 16.155 1 1622700 56039 9910 37680 38513 65096 65096 0.10449602656603929 RYIQPWESEF 10 Unmodified _RYIQPWESEF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8;ENST00000572445.1_1_17:1564459-1565038:-|nuORF ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8248291015625 2 677.824952 1353.63535 -0.13417 -9.0946E-05 1.0151 0.00068806 0.88093 0.00059712 677.8257107306011 61.439 0.19276 60.95 60.858 61.051 -0.48932 18 8 3 0 0 0 0.56707 1 33488 33488 19.362 9.9788 1 1388400 56040 8403 37681 38514 65097 65097 -0.0273211929916215 RYIQWVEENF 10 Unmodified _RYIQWVEENF_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MSMS AL20221201_MKP_PDAC_01 4 692.3411865234375 2 692.338227 1382.6619 NaN NaN NaN NaN NaN NaN NaN 92.724 1 86.549 86.049 87.049 -6.1757 0 0 0 0.13895 1 61329 61329 55.503 36.141 1 56041 7898 37682 38515 65098 65098 -0.014124304078222849 RYIRATPNCE 10 Unmodified _RYIRATPNCE_ 0 0 0 REV__ENSG00000076864|ENST00000374765|RAP1GAP REV__ENSG00000076864|ENST00000374765|RAP1GAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2062072753906 3 408.204757 1221.59244 NaN NaN NaN NaN NaN NaN NaN 25.323 1 25.306 24.806 25.806 -0.017006 0 0 0 0.97302 1 12966 12966 1.7423 0 1 + 56042 17596 37683 38516 65099 65099 -0.009492126282339086 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5400695800781 3 393.540357 1177.59924 -0.49692 -0.00019556 -0.026525 -1.0438E-05 -0.52345 -0.000206 393.54035821449685 19.902 0.17982 19.902 19.801 19.981 0 58 20 4 0 0 0 0.060956 1 9967 9967 42.312 26.574 1 7677000 56043 6681 37684 38517 65100 65100 0.017544683146297757 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5401306152344 3 393.540357 1177.59924 -0.43533 -0.00017132 0.42292 0.00016644 -0.012412 -4.8847E-06 393.5405906553201 19.754 0.21746 19.782 19.68 19.898 0.028355 50 13 5 0 0 0 0.026499 1 9953 9953 57.249 20.174 1 27092000 56044 6681 37684 38517 65101 65101 0.017544683146297757 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5411376953125 3 393.540357 1177.59924 -0.014898 -5.863E-06 0.88193 0.00034708 0.86703 0.00034121 393.5407656742694 19.821 0.23362 19.829 19.713 19.946 0.0078506 34 11 4 0 0 0 0.040733 1 10076 10076 49.527 24.536 1 8783300 56045 6681 37684 38517 65102 65102 0.017544683146297757 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5406188964844 3 393.540357 1177.59924 0.60328 0.00023742 -0.1655 -6.5131E-05 0.43778 0.00017228 393.5403017962528 22.666 0.47565 19.888 19.613 20.089 -2.7784 121 32 5 0 0 0 0.13639 2 12163 12163;12276 29.437 15.032 1 288170000 56046 6681 37684 38517 65103;65104 65103 0.017544683146297757 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.80615234375 2 589.806897 1177.59924 0.26664 0.00015726 -0.55871 -0.00032953 -0.29207 -0.00017226 589.8066175961628 22.67 0.24909 19.892 19.753 20.002 -2.7784 42 18 3 0 0 0 0.040733 1 12169 12169 38.176 20.029 1 8976200 56047 6681 37684 38517 65105 65105 0.017544683146297757 RYIRDAHTF 9 Unmodified _RYIRDAHTF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 589.806897 1177.59924 -0.47229 -0.00027856 0.38223 0.00022544 -0.090061 -5.3118E-05 590.3082792581923 19.76 0.074337 19.788 19.743 19.817 0.028357 -0.051716 0.00098941 NaN 38.176 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 317420 56048 6681 37684 38517 0.017544683146297757 RYIRKREK 8 Unmodified _RYIRKREK_ 0 0 0 ENST00000604081.1_1_12:54388028-54388532:-|nuORF ENST00000604081.1_1_12:54388028-54388532:-|nuORF ENST00000604081.1_1_12:54388028-54388532:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.5430908203125 3 383.57188 1147.69381 1.2341 0.00047337 1.772 0.00067969 3.0061 0.0011531 383.9071073096373 31.995 0.20333 28.299 28.19 28.394 -3.6958 12 10 2 0 0 0 8.7369 1 18228 18228 3.5965 1.098 1 6606800 56049 15836 37685 38518 65106 65106 0.1258702685663593 RYIRLRFQRIR 11 Unmodified _RYIRLRFQRIR_ 0 0 0 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3255615234375 3 526.32682 1575.95863 -0.63742 -0.00033549 -1.5645 -0.00082342 -2.2019 -0.0011589 526.3262970227133 101.7 0.11967 101.65 101.58 101.7 -0.045853 9 3 4 0 0 0 0.30605 1 56516 56516 0 0 1 24450000 56050 9842 37686 38519 65107 65107 0.19369076330235657 RYIRTHKAL 9 Unmodified _RYIRTHKAL_ 0 0 0 REV__ZNF320|p.H211Y|1|0.13|ENSG00000182986|chr19:52881495-52881495|G/A|missense_variant REV__ZNF320|p.H211Y|1|0.13|ENSG00000182986|chr19:52881495-52881495|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5678405761719 3 386.568247 1156.68291 NaN NaN NaN NaN NaN NaN NaN 26.523 1 26.55 26.05 27.05 0.026951 0 0 0 0.71962 1 13759 13759 8.7454 0.58988 1 + 56051 30140 37687 38520 65108 65108 0.11083624482353116 RYISDQLFTNF 11 Unmodified _RYISDQLFTNF_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 702.3504638671875 2 702.351334 1402.68811 0.48866 0.00034321 -0.24445 -0.00017169 0.24421 0.00017152 702.3510329402727 72.18 0.28549 71.704 71.549 71.834 -0.47609 28 12 4 0 0 0 0.029924 1 39474 39474 55.249 28.98 1 2391500 56052 2500 37688 38521 65109 65109 0.00287838763642867 RYISDQLFTNF 11 Unmodified _RYISDQLFTNF_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 702.3524780273438 2 702.351334 1402.68811 0.83996 0.00058995 -0.01155 -8.1123E-06 0.82841 0.00058184 702.351353256071 71.637 0.36026 71.676 71.49 71.85 0.039024 60 16 5 0 0 0 0.00076978 2 39395 39395;39500 85.764 63.028 1 21024000 56053 2500 37688 38521 65110;65111 65110 0.00287838763642867 RYISDQLFTNF 11 Unmodified _RYISDQLFTNF_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 702.35302734375 2 702.351334 1402.68811 0.50159 0.00035229 0.52571 0.00036923 1.0273 0.00072152 702.351593790119 91.126 0.5888 84.951 84.644 85.233 -6.1757 90 34 3 0 0 0 1.4401E-11 3 60316 60058;60187;60316 128.57 105.84 1 41180000 56054 2500 37688 38521 65112;65113;65114 65114 0.00287838763642867 RYISGLSKW 9 Unmodified _RYISGLSKW_ 0 0 0 nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3093872070312 2 555.308741 1108.60293 0.53459 0.00029686 -0.21602 -0.00011996 0.31857 0.0001769 555.8104821117164 39.866 0.16764 39.871 39.791 39.959 0.0050545 14 7 3 0 0 0 0.2546 1 21246 21246 19.362 7.1213 1 1081500 56055 4826 37689 38522 65115 65115 0.052971380884855535 RYISPDQLADL 11 Unmodified _RYISPDQLADL_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8370361328125 2 645.838059 1289.66157 0.1649 0.0001065 -0.15789 -0.00010197 0.0070085 4.5263E-06 645.8378369437044 59.507 0.27173 59.507 59.355 59.627 0 29 11 3 0 0 0 0.083469 1 33136 33136 44.392 26.019 1 5083900 56056 1135 37690 38523 65116 65116 0.02832149872347145 RYISPDQLADL 11 Unmodified _RYISPDQLADL_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.837646484375 2 645.838059 1289.66157 -0.012386 -7.9991E-06 -0.30455 -0.00019669 -0.31694 -0.00020469 645.8377527903817 60.125 0.29432 59.634 59.471 59.766 -0.49079 33 14 3 0 0 0 0.12819 2 32685 32685;32793 39.213 17.623 1 10950000 56057 1135 37690 38523 65117;65118 65117 0.02832149872347145 RYISPKDFKI 10 Unmodified _RYISPKDFKI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9116821289062 3 422.911679 1265.71321 0.71014 0.00030033 0.46053 0.00019476 1.1707 0.00049509 422.91179860662766 47.445 0.24019 47.406 47.258 47.498 -0.038643 30 10 4 0 0 0 0.59286 1 25526 25526 11.518 3.0736 1 3156500 56058 5063 37691 38524 65119 65119 0.09097938356876512 RYISPKDFKI 10 Unmodified _RYISPKDFKI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5928344726562 3 422.911679 1265.71321 NaN NaN NaN NaN NaN NaN NaN 46.262 1 46.229 45.729 46.729 -0.033417 0 0 0 0.97556 1 24883 24883 3.3196 0 1 56059 5063 37691 38524 65120 65120 0.09097938356876512 RYISPKDFKI 10 Unmodified _RYISPKDFKI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5926513671875 3 422.911679 1265.71321 0.40836 0.0001727 0.93494 0.0003954 1.3433 0.0005681 422.9118950685132 45.981 0.28162 45.953 45.804 46.086 -0.028011 33 12 3 0 0 0 0.23195 1 24688 24688 12.873 3.1084 1 4581200 56060 5063 37691 38524 65121 65121 0.09097938356876512 RYISPKDFKI 10 Unmodified _RYISPKDFKI_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2468872070312 3 422.911679 1265.71321 1.4227 0.00060167 0.67059 0.0002836 2.0933 0.00088527 422.9118928186472 86.913 0.64334 80.737 80.338 80.982 -6.1757 112 34 4 0 0 0 0.54083 1 57373 57373 14.218 1.9906 1 138000000 56061 5063 37691 38524 65122 65122 0.09097938356876512 RYISQPPLL 9 Unmodified _RYISQPPLL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8181762695312 2 543.818941 1085.62333 -0.1296 -7.048E-05 0.22734 0.00012363 0.097734 5.315E-05 543.8192706175321 54.779 0.27932 54.312 54.182 54.461 -0.46664 31 13 3 0 0 0 0.024882 1 29679 29679 58.679 8.7458 1 8408900 56062 3218 37692 38525 65123 65123 0.08394308748324875 RYISQPPLL 9 Unmodified _RYISQPPLL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8189697265625 2 543.818941 1085.62333 0.11528 6.269E-05 -0.62377 -0.00033922 -0.50849 -0.00027653 543.8188713146935 54.455 0.30166 54.388 54.202 54.504 -0.066936 32 14 3 0 0 0 0.028475 1 29514 29514 56.177 14.337 1 9249400 56063 3218 37692 38525 65124 65124 0.08394308748324875 RYISQPPLL 9 Unmodified _RYISQPPLL_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8195190429688 2 543.818941 1085.62333 0.89158 0.00048486 -0.18393 -0.00010002 0.70765 0.00038484 543.8189568046571 60.43 0.44462 54.283 54.052 54.496 -6.1464 47 23 3 0 0 0 0.028475 2 38807 38807;38942 56.177 7.4379 1 35010000 56064 3218 37692 38525 65125;65126 65125 0.08394308748324875 RYITKGNLF 9 Unmodified _RYITKGNLF_ 0 0 0 nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.316162109375 2 556.316566 1110.61858 0.43469 0.00024183 -0.53844 -0.00029954 -0.10374 -5.7713E-05 556.3161129734369 38.918 0.24156 38.93 38.801 39.042 0.011452 21 11 2 0 0 0 0.047788 1 20706 20706 45.7 31.118 1 7630300 56065 10904 37693 38526 65127 65127 0.0676942460556802 RYITKGNLF 9 Unmodified _RYITKGNLF_ 0 0 0 nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2132263183594 3 371.213469 1110.61858 0.17091 6.3442E-05 -0.58313 -0.00021647 -0.41223 -0.00015302 371.2132229859509 38.925 0.30521 38.937 38.779 39.084 0.011452 32 14 3 0 0 0 0.10247 1 20729 20729 30.703 20.553 1 6546300 56066 10904 37693 38526 65128 65128 0.0676942460556802 RYIVCRALQF 10 Carbamidomethyl (C) _RYIVC(Carbamidomethyl (C))RALQF_ RYIVC(1)RALQF RYIVC(41)RALQF 0 1 0 ENSG00000247077|ENST00000498926|PGAM5 ENSG00000247077|ENST00000498926|PGAM5 ENSG00000247077|ENST00000498926|PGAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.5771179199219 3 442.576413 1324.70741 1.0875 0.0004813 -0.065349 -2.8922E-05 1.0221 0.00045237 442.576521749033 81.072 0.20476 74.896 74.808 75.013 -6.1757 16 11 2 0 0 0 0.14294 1 53211 53211 40.725 25.768 1 9747400 56067 10736 37694 38527 65129 65129 950 0.058045165735620685 RYIYNREEF 9 Unmodified _RYIYNREEF_ 0 0 0 ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1 ENST00000469120.1_1_6:33043797-33048717:+|nuORF ENST00000469120.1_1_6:33043797-33048717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.8182373046875 2 645.317294 1288.62004 -0.66627 -0.00042996 0.56053 0.00036172 -0.10574 -6.8235E-05 645.3177196148238 31.91 0.14258 31.91 31.84 31.983 0 11 6 2 0 0 0 0.29507 1 16650 16650 18.146 13.249 1 2171100 56068 10577 37695 38528 65130 65130 -0.012729860963418105 RYIYNREEF 9 Unmodified _RYIYNREEF_ 0 0 0 ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1 ENST00000469120.1_1_6:33043797-33048717:+|nuORF ENST00000469120.1_1_6:33043797-33048717:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.8827209472656 3 430.547288 1288.62004 1.1335 0.00048801 2.0953 0.00090212 3.2287 0.0013901 430.5471531161375 35.675 0.4891 31.482 31.252 31.741 -4.1928 64 30 3 0 0 0 0.011739 1 20704 20704 75.571 59.296 1 15285000 56069 10577 37695 38528 65131 65131 -0.012729860963418105 RYIYNREEF 9 Unmodified _RYIYNREEF_ 0 0 0 ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1 ENST00000469120.1_1_6:33043797-33048717:+|nuORF ENST00000469120.1_1_6:33043797-33048717:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.3177490234375 2 645.317294 1288.62004 0.88934 0.00057391 -0.25078 -0.00016183 0.63856 0.00041207 645.3173453991556 35.683 0.24685 31.49 31.351 31.598 -4.1928 22 15 2 0 0 0 0.047194 1 20754 20754 49.554 37.023 1 6521600 56070 10577 37695 38528 65132 65132 -0.012729860963418105 RYIYTTKTL 9 Unmodified _RYIYTTKTL_ 0 0 0 ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C ENSG00000186141|ENST00000334163|POLR3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8302612304688 2 579.829506 1157.64446 NaN NaN NaN NaN NaN NaN NaN 30.915 1 30.945 30.445 31.445 0.030106 0 0 0 0.026638 1 16178 16178 70.332 37.546 1 56071 9456 37696 38529 65133 65133 0.07194274057178518 RYKAPFHQL 9 Unmodified _RYKAPFHQL_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5508422851562 3 387.217214 1158.62981 0.16309 6.315E-05 0.031445 1.2176E-05 0.19453 7.5325E-05 387.21720854410506 26.53 0.32206 26.557 26.382 26.704 0.026951 43 13 4 0 0 0 0.008678 2 13708 13708;13801 72.968 53.606 1 71942000 56072 6242 37697 38530 65134;65135 65134 0.056842466997068186 RYKAPFHQL 9 Unmodified _RYKAPFHQL_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5511779785156 3 387.217214 1158.62981 0.91639 0.00035484 -0.015272 -5.9135E-06 0.90112 0.00034893 387.21715678813257 29.868 0.39769 26.566 26.37 26.767 -3.3016 49 19 3 0 0 0 0.008678 2 16747 16747;16855 70.332 55.084 1 160040000 56073 6242 37697 38530 65136;65137 65136 0.056842466997068186 RYKAPFHQL 9 Unmodified _RYKAPFHQL_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 387.217214 1158.62981 -0.60498 -0.00023426 -0.14655 -5.6748E-05 -0.75153 -0.000291 387.5520429004397 26.763 0.18772 26.763 26.658 26.846 0 0.13442 -0.00017618 NaN 70.332 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 494680 56074 6242 37697 38530 0.056842466997068186 RYKATGLHF 9 Unmodified _RYKATGLHF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8700561523438 3 364.869814 1091.58761 0.18734 6.8356E-05 0.304 0.00011092 0.49134 0.00017928 364.86985687247693 27.622 0.21287 27.651 27.513 27.726 0.028664 23 9 3 0 0 0 0.0088174 1 14335 14335 103.42 79.63 1 14353000 56075 5256 37698 38531 65138 65138 0.04548271291309902 RYKATGLHF 9 Unmodified _RYKATGLHF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8703002929688 3 364.869814 1091.58761 1.7362 0.0006335 -0.5204 -0.00018988 1.2159 0.00044363 364.86961342785474 30.525 0.35231 27.028 26.78 27.132 -3.497 31 17 2 0 0 0 0.0074135 2 17163 17163;17279 100.71 70.868 1 34230000 56076 5256 37698 38531 65139;65140 65139 0.04548271291309902 RYKDGVVTI 9 Unmodified _RYKDGVVTI_ 0 0 0 ENSG00000204590|ENST00000376621|GNL1;nc|ENSG00000204590|P36915-2|GNL1;ENST00000462708.1_1_6:30514431-30520307:-|nuORF ENSG00000204590|ENST00000376621|GNL1 ENSG00000204590|ENST00000376621|GNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8013305664062 2 525.800749 1049.58694 0.98078 0.00051569 -0.56018 -0.00029454 0.4206 0.00022115 525.8005436577632 35.035 0.38479 30.94 30.752 31.137 -4.0951 39 22 2 0 0 0 0.047194 1 20249 20249 49.554 11.379 1 15760000 56077 10305 37699 38532 65141 65141 0.06413431851638052 RYKDTINKI 9 Unmodified _RYKDTINKI_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2240905761719 3 384.224146 1149.65061 1.6075 0.00061763 -2.2953 -0.00088191 -0.68784 -0.00026429 384.2235095823941 21.238 0.3042 18.545 18.4 18.704 -2.693 32 22 2 0 0 0 0.0090383 1 11325 11325 85.764 43.452 1 10557000 56078 967 37700 38533 65142 65142 0.08176792288713841 RYKEENIEL 9 Unmodified _RYKEENIEL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5438537597656 3 398.543544 1192.6088 -1.0576 -0.00042152 0.57707 0.00022999 -0.48057 -0.00019153 398.54380114042635 32.214 0.35242 32.214 32.002 32.355 0 49 17 4 0 0 0 0.044011 1 16781 16781 37.075 6.3712 1 23291000 56079 9835 37701 38534 65143 65143 0.02020191809538119 RYKEENIEL 9 Unmodified _RYKEENIEL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3114013671875 2 597.311677 1192.6088 -1.0503 -0.00062736 0.45465 0.00027157 -0.59566 -0.0003558 597.3120466800559 32.206 0.27067 32.206 32.063 32.334 0 31 13 3 0 0 0 0.036857 1 16792 16792 51.63 20.361 1 9355300 56080 9835 37701 38534 65144 65144 0.02020191809538119 RYKEENIEL 9 Unmodified _RYKEENIEL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5438537597656 3 398.543544 1192.6088 1.1895 0.00047406 -0.13566 -5.4066E-05 1.0538 0.00042 398.54352218060006 35.708 0.62571 31.515 31.177 31.802 -4.1928 91 39 4 0 0 0 0.044011 2 20673 20673;20808 37.075 20.026 1 38138000 56081 9835 37701 38534 65145;65146 65145 0.02020191809538119 RYKEENIEL 9 Unmodified _RYKEENIEL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3119506835938 2 597.311677 1192.6088 0.59505 0.00035543 0.06535 3.9034E-05 0.6604 0.00039446 597.311748119489 35.737 0.42222 31.545 31.318 31.741 -4.1928 71 26 3 0 0 0 0.0090524 2 20680 20680;20810 85.642 29.464 1 28558000 56082 9835 37701 38534 65147;65148 65147 0.02020191809538119 RYKEENNDHL 10 Unmodified _RYKEENNDHL_ 0 0 0 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.8782653808594 3 439.877586 1316.61093 0.29917 0.0001316 0.74043 0.0003257 1.0396 0.00045729 439.8781579332876 14.819 0.12644 12.291 12.233 12.359 -2.5273 43 20 3 0 0 0 0.027278 1 7542 7542 53.798 42.733 1 4434000 56083 5063 37702 38535 65149 65149 -0.03471379452662404 RYKEKVAEL 9 Unmodified _RYKEKVAEL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7 nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2201538085938 3 379.220513 1134.63971 -0.51878 -0.00019673 0.43898 0.00016647 -0.079793 -3.0259E-05 379.22063556187317 18.897 0.18763 18.897 18.806 18.994 0 48 15 4 0 0 0 0.13231 1 9410 9410 28.234 14.715 1 9029700 56084 4827 37703 38536 65150 65150 0.07777389914417654 RYKEKVAEL 9 Unmodified _RYKEKVAEL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7 nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2205505371094 3 379.220513 1134.63971 1.6426 0.0006229 -0.12326 -4.6745E-05 1.5193 0.00057616 379.2203954855755 20.829 0.43012 18.136 17.941 18.371 -2.693 77 26 4 0 0 0 0.085319 2 11029 11029;11139 34.222 16.359 1 54812000 56085 4827 37703 38536 65151;65152 65151 0.07777389914417654 RYKEKVAEL 9 Unmodified _RYKEKVAEL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7 nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3283081054688 2 568.327131 1134.63971 1.303 0.00074051 0.39056 0.00022197 1.6935 0.00096248 568.3273402416958 20.818 0.18914 18.125 18.036 18.225 -2.693 21 11 2 0 0 0 0.2546 1 11086 11086 19.362 4.9566 1 2673600 56086 4827 37703 38536 65153 65153 0.07777389914417654 RYKEKVAEL 9 Unmodified _RYKEKVAEL_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;nc|ENSG00000136504|O95251-3|KAT7;nc|ENSG00000136504|O95251-5|KAT7 nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.220513 1134.63971 0.076506 2.9013E-05 -0.23595 -8.9479E-05 -0.15945 -6.0466E-05 379.2205970452536 18.823 0.11643 18.829 18.767 18.883 0.0060463 -0.034188 -0.0007208 NaN 28.234 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 549220 56087 4827 37703 38536 0.07777389914417654 RYKFHNSRW 9 Unmodified _RYKFHNSRW_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF;ENST00000552054.1_1_12:115118611-115121104:-|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8919677734375 3 431.891501 1292.65267 1.2433 0.00053695 -0.41772 -0.00018041 0.82554 0.00035655 431.8915267819057 20.255 0.36322 17.562 17.418 17.781 -2.693 54 24 3 0 0 0 0.18144 1 10743 10743 35.612 29.42 1 8047500 56088 4671 37704 38537 65154 65154 0.01805265817165491 RYKFHNSRW 9 Unmodified _RYKFHNSRW_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF;ENST00000552054.1_1_12:115118611-115121104:-|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.8931274414062 3 431.891501 1292.65267 0.96303 0.00041593 -0.15053 -6.5014E-05 0.8125 0.00035091 431.8921400530265 77.801 0.49003 71.626 71.392 71.882 -6.1757 41 27 2 0 0 0 0.047714 1 50934 50934 36.395 28.45 1 12249000 56089 4671 37704 38537 65155 65155 0.01805265817165491 RYKFRTWRQLW 11 Unmodified _RYKFRTWRQLW_ 0 0 0 nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL nc|ENSG00000239900|P30566-2|ADSL nc|ENSG00000239900|P30566-2|ADSL MSMS AL20221201_MKP_PDAC_01 4 820.448486328125 2 820.452051 1638.88955 NaN NaN NaN NaN NaN NaN NaN 41.185 1 36.577 36.077 37.077 -4.6079 0 0 0 0.94307 1 24692 24692 0.30703 0.30703 1 56090 10667 37705 38538 65156 65156 0.095659923106723 RYKGNFLQSC 10 Unmodified _RYKGNFLQSC_ 0 0 0 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8701477050781 3 405.869485 1214.58663 -0.26817 -0.00010884 1.5481 0.00062833 1.2799 0.00051949 405.87011128126846 30.069 0.3302 30.099 29.97 30.3 0.030106 28 13 3 0 0 0 0.71123 1 15715 15715 0.69767 0.07084 1 1484800 56091 3761 37706 38539 65157 65157 -0.012083111398851543 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.8765258789062 3 421.876746 1262.60841 0.75458 0.00031834 -0.23061 -9.7288E-05 0.52397 0.00022105 421.8765633279048 49.579 0.31044 49.187 49.003 49.313 -0.3923 32 15 3 0 0 0 0.45406 1 26644 26644 18.721 5.1064 1 6676000 56092 7433 37707 38540 65158 65158 -0.012391831196737257 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.877685546875 3 421.876746 1262.60841 0.43913 0.00018526 0.42923 0.00018108 0.86836 0.00036634 421.87682457844915 49.21 0.37379 49.166 48.982 49.355 -0.04369 62 17 5 0 0 0 0.39689 2 26549 26549;26650 21.799 8.9269 1 27205000 56093 7433 37707 38540 65159;65160 65159 -0.012391831196737257 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.31298828125 2 632.31148 1262.60841 0.49365 0.00031214 0.23783 0.00015038 0.73148 0.00046252 632.3115960214957 49.211 0.30838 49.167 49.027 49.336 -0.04369 46 14 4 0 0 0 0.036372 2 26555 26555;26664 75.761 48.877 1 13679000 56094 7433 37707 38540 65161;65162 65161 -0.012391831196737257 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MSMS AL20221201_MKP_PDAC_01 4 632.3143920898438 2 632.31148 1262.60841 NaN NaN NaN NaN NaN NaN NaN 75.414 1 69.239 68.739 69.739 -6.1757 0 0 0 0.39463 1 49320 49320 36.506 8.0194 1 56095 7433 37707 38540 65163 65163 -0.012391831196737257 RYKGPGFEYF 10 Unmodified _RYKGPGFEYF_ 0 0 0 nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 nc|ENSG00000166133|Q8IZ73-2|RPUSD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.2335510253906 3 421.876746 1262.60841 1.0906 0.00046008 -0.5205 -0.00021959 0.57006 0.00024049 422.21074851708113 75.451 0.45878 69.275 69.084 69.543 -6.1757 30 24 2 0 0 0 0.23558 1 49269 49269 7.4771 6.8502 1 6063300 56096 7433 37707 38540 65164 65164 -0.012391831196737257 RYKIPVEADFL 11 Unmodified _RYKIPVEADFL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.9194946289062 3 450.918722 1349.73434 0.30722 0.00013853 0.02188 9.8661E-06 0.3291 0.0001484 450.9188219674587 63.727 0.23629 63.241 63.082 63.318 -0.48617 26 10 3 0 0 0 0.6704 1 34743 34743 7.0341 4.1908 1 4187200 56097 7391 37708 38541 65165 65165 0.07345903665759579 RYKIPVEADFL 11 Unmodified _RYKIPVEADFL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.9188537597656 3 450.918722 1349.73434 1.1511 0.00051906 -1.2819 -0.00057804 -0.13079 -5.8974E-05 450.91817711304657 92.217 0.22755 86.041 85.921 86.149 -6.1757 24 13 2 0 0 0 0.47711 1 60953 60953 17.572 9.7259 1 15800000 56098 7391 37708 38541 65166 65166 0.07345903665759579 RYKIPVEADFL 11 Unmodified _RYKIPVEADFL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.9187622070312 3 450.918722 1349.73434 1.0287 0.00046386 -0.42578 -0.00019199 0.60292 0.00027187 450.9183254936757 92.439 0.1534 86.263 86.131 86.284 -6.1757 9 8 2 0 0 0 0.62603 1 61136 61136 10.016 4.8178 1 11674000 56099 7391 37708 38541 65167 65167 0.07345903665759579 RYKIPVEADFL 11 Unmodified _RYKIPVEADFL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MSMS AL20221201_MKP_PDAC_01 4 675.8762817382812 2 675.874445 1349.73434 NaN NaN NaN NaN NaN NaN NaN 92.216 1 86.04 85.54 86.54 -6.1757 0 0 0 0.48432 1 60976 60976 30.703 6.9137 1 56100 7391 37708 38541 65168 65168 0.07345903665759579 RYKIPVEADFL 11 Unmodified _RYKIPVEADFL_ 0 0 0 nc|ENSG00000165806|P55210-4|CASP7;ENSG00000165806|ENST00000369318|CASP7;nc|ENSG00000165806|P55210-3|CASP7 nc|ENSG00000165806|P55210-4|CASP7 nc|ENSG00000165806|P55210-4|CASP7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 450.918722 1349.73434 0.78029 0.00035185 0.26005 0.00011726 1.0403 0.00046911 450.9185364008071 63.194 0.24785 63.172 63.049 63.297 -0.021614 -0.034252 0.00024331 NaN 7.0341 22 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3450600 56101 7391 37708 38541 0.07345903665759579 RYKIVETLI 9 Unmodified _RYKIVETLI_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8475341796875 2 567.847699 1133.68084 0.34379 0.00019522 -0.31377 -0.00017817 0.03002 1.7047E-05 567.8476053926782 51.048 0.28449 50.994 50.862 51.147 -0.053871 32 13 3 0 0 0 0.044011 1 27602 27602 47.749 3.9763 1 7164900 56102 10911 37709 38542 65169 65169 0.1193515095390012 RYKIVETLI 9 Unmodified _RYKIVETLI_ 0 0 0 ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8489990234375 2 567.847699 1133.68084 1.1395 0.00064706 0.55643 0.00031597 1.6959 0.00096303 567.84799922227 91.593 0.37881 85.417 85.188 85.567 -6.1757 49 20 3 0 0 0 0.028475 2 60480 60480;60608 56.177 10.156 1 29631000 56103 10911 37709 38542 65170;65171 65170 0.1193515095390012 RYKLRENQL 9 Unmodified _RYKLRENQL_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5693969726562 3 407.235045 1218.6833 0.77543 0.00031578 0.44832 0.00018257 1.2237 0.00049835 407.2352130754496 22.324 0.20839 19.589 19.505 19.714 -2.7348 16 10 2 0 0 0 0.40615 1 11990 11990 12.175 4.6977 1 2661200 56104 1712 37710 38543 65172 65172 0.08270999411547564 RYKLRENQL 9 Unmodified _RYKLRENQL_ 0 0 0 ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF ENSG00000099817|ENST00000615234|POLR2E ENSG00000099817|ENST00000615234|POLR2E MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 407.235045 1218.6833 -0.12974 -5.2834E-05 -1.9051 -0.00077582 -2.0348 -0.00082866 407.23379764131727 19.558 0.058334 19.566 19.529 19.588 0.0078487 -0.011669 -0.0026072 NaN 12.175 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 374810 56105 1712 37710 38543 0.08270999411547564 RYKLYQEMF 9 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ RYKLYQEM(1)F RYKLYQEM(55)F 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.3152465820312 2 647.318448 1292.62234 -0.090979 -5.8892E-05 -0.63636 -0.00041193 -0.72734 -0.00047082 647.3181539559108 37.961 0.31967 37.69 37.562 37.882 -0.27133 46 15 4 0 0 0 0.031062 1 19938 19938 54.774 47.484 1 25293000 56106 9907 37711 38544 65173 65173 1593 -0.01226273682914325 RYKLYQEMF 9 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ RYKLYQEM(1)F RYKLYQEM(73)F 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3175048828125 2 647.318448 1292.62234 0.11858 7.6759E-05 -0.57298 -0.0003709 -0.4544 -0.00029414 647.3181885150727 37.545 0.2936 37.562 37.438 37.731 0.01704 48 14 4 0 0 0 0.012668 2 19908 19908;20020 72.968 50.232 1 33322000 56107 9907 37711 38544 65174;65175 65174 1593 -0.01226273682914325 RYKLYQEMF 9 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ RYKLYQEM(1)F RYKLYQEM(100)F 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3179931640625 2 647.318448 1292.62234 0.66673 0.00043159 -0.79709 -0.00051597 -0.13036 -8.4383E-05 647.3180928019325 42.299 0.40459 37.615 37.39 37.794 -4.6846 78 25 4 0 0 0 0.0085164 2 25440 25440;25581 99.799 75.778 1 75295000 56108 9907 37711 38544 65176;65177 65176 1593 -0.01226273682914325 RYKLYQEMF 9 Oxidation (M) _RYKLYQEM(Oxidation (M))F_ 0 0 1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 647.318448 1292.62234 -0.07642 -4.9468E-05 -0.75962 -0.00049171 -0.83604 -0.00054118 647.3195267455199 37.547 0.15214 37.547 37.51 37.662 0 -0.056474 -0.00010006 NaN 99.799 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3269900 56109 9907 37711 38544 1593 -0.01226273682914325 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.5499877929688 3 426.549753 1276.62743 0.26543 0.00011322 0.29282 0.0001249 0.55825 0.00023812 426.54997562381914 48.852 0.247 48.48 48.388 48.635 -0.37172 31 12 3 0 0 0 0.16226 1 26238 26238 24.991 20.094 1 5643900 56110 9907 37711 38545 65178 65178 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.3211059570312 2 639.320991 1276.62743 0.022548 1.4415E-05 0.2873 0.00018368 0.30985 0.00019809 639.3210543415403 48.868 0.13049 48.496 48.427 48.558 -0.37172 10 6 2 0 0 0 0.36964 1 26263 26263 13.906 4.5229 1 1759600 56111 9907 37711 38545 65179 65179 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5497131347656 3 426.549753 1276.62743 0.36544 0.00015588 0.012848 5.4804E-06 0.37829 0.00016136 426.5499163250201 48.511 0.33505 48.467 48.359 48.694 -0.04369 53 16 4 0 0 0 0.12424 1 26156 26156 28.495 24.378 1 15831000 56112 9907 37711 38545 65180 65180 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.3215942382812 2 639.320991 1276.62743 0.35657 0.00022796 0.51854 0.00033152 0.87511 0.00055948 639.3215726087441 48.516 0.23243 48.472 48.377 48.609 -0.04369 27 11 3 0 0 0 0.12424 1 26180 26180 30.637 24.905 1 5645300 56113 9907 37711 38545 65181 65181 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3225708007812 2 639.320991 1276.62743 1.0673 0.00068234 0.67209 0.00042968 1.7394 0.001112 639.3217391637429 54.111 0.22701 48.245 48.139 48.366 -5.8653 20 12 2 0 0 0 0.039985 1 34278 34278 49.933 29.479 1 9748900 56114 9907 37711 38545 65182 65182 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5498962402344 3 426.549753 1276.62743 1.4389 0.00061376 -0.44962 -0.00019178 0.98927 0.00042197 426.5495442551751 54.141 0.33825 48.276 48.099 48.437 -5.8653 25 18 2 0 0 0 0.08691 1 34337 34337 27.223 23.034 1 9773200 56115 9907 37711 38545 65183 65183 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3217163085938 2 639.320991 1276.62743 0.69966 0.00044731 2.0083 0.0012839 2.7079 0.0017312 639.3209695693595 85.836 0.88481 79.66 79.292 80.177 -6.1757 129 49 3 0 0 0 0.039985 4 56450 56450;56590;56724;56849 49.933 30.676 1 96961000 56116 9907 37711 38545 65184;65185;65186;65187 65184 0.000180301797172433 RYKLYQEMF 9 Unmodified _RYKLYQEMF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5501403808594 3 426.549753 1276.62743 1.1644 0.00049667 -0.33384 -0.0001424 0.83055 0.00035427 426.54967684669725 85.911 0.81871 79.735 79.394 80.213 -6.1757 145 45 4 0 0 0 0.12424 3 56577 56577;56722;56848 28.495 21.457 1 82069000 56117 9907 37711 38545 65188;65189;65190 65188 0.000180301797172433 RYKNDHINL 9 Unmodified _RYKNDHINL_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5439453125 3 391.543878 1171.60981 -0.45073 -0.00017648 -0.042033 -1.6458E-05 -0.49276 -0.00019294 391.543837995182 20.897 0.16482 20.897 20.799 20.964 0 84 32 3 0 0 0 0.46501 1 10508 10508 9.544 3.3521 1 5923700 56118 3241 37712 38546 65191 65191 0.030864509690900377 RYKNDHINL 9 Unmodified _RYKNDHINL_ 0 0 0 ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 ENSG00000116685|ENST00000376572|KIAA2013 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5442504882812 3 391.543878 1171.60981 0.40653 0.00015917 0.022253 8.713E-06 0.42878 0.00016789 391.54382708854473 23.068 0.36773 20.29 20.089 20.457 -2.7784 77 31 3 0 0 0 0.047196 2 12375 12375;12482 49.554 33.28 1 59926000 56119 3241 37712 38546 65192;65193 65192 0.030864509690900377 RYKPGEPITF 10 Unmodified _RYKPGEPITF_ 0 0 0 nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2204895019531 3 403.220513 1206.63971 -0.051474 -2.0755E-05 -0.42819 -0.00017266 -0.47966 -0.00019341 403.2200520220488 41.413 0.16545 41.11 40.986 41.152 -0.30304 13 7 2 0 0 0 0.48629 1 21948 21948 17.049 10.857 1 2893300 56120 10418 37713 38547 65194 65194 0.04465389914412299 RYKPGEPITF 10 Unmodified _RYKPGEPITF_ 0 0 0 nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2207946777344 3 403.220513 1206.63971 0.57613 0.00023231 -0.42329 -0.00017068 0.15284 6.1628E-05 403.2201136012656 45.435 0.29418 40.48 40.332 40.626 -4.9549 29 19 2 0 0 0 0.24975 2 27891 27870;27891 30.431 23.245 1 9853500 56121 10418 37713 38547 65195;65196 65196 0.04465389914412299 RYKPGEPITF 10 Unmodified _RYKPGEPITF_ 0 0 0 nc|ENSG00000213047|Q6P3S1-4|DENND1B;nc|ENSG00000213047|Q6P3S1-2|DENND1B;nc|ENSG00000213047|Q6P3S1-5|DENND1B;ENSG00000213047|ENST00000620048|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B nc|ENSG00000213047|Q6P3S1-4|DENND1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3280029296875 2 604.327131 1206.63971 -0.010105 -6.1066E-06 0.69087 0.00041751 0.68076 0.0004114 604.3273816826533 45.449 0.29362 40.494 40.363 40.656 -4.9549 29 19 2 0 0 0 0.1711 1 27890 27890 49.527 24.128 1 13272000 56122 10418 37713 38547 65197 65197 0.04465389914412299 RYKQDVERF 9 Unmodified _RYKQDVERF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2191772460938 3 414.219283 1239.63602 -0.56443 -0.0002338 0.56955 0.00023592 0.0051208 2.1211E-06 414.21952234376255 19.07 0.23818 19.07 18.947 19.185 0 53 16 5 0 0 0 0.047194 1 9479 9479 46.022 16.585 1 48929000 56123 10186 37714 38548 65198 65198 0.025787201405364613 RYKQDVERF 9 Unmodified _RYKQDVERF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2197265625 3 414.219283 1239.63602 -0.54854 -0.00022722 0.5967 0.00024716 0.048162 1.9949E-05 414.21963147896736 18.943 0.12197 18.966 18.902 19.023 0.023106 18 7 4 0 0 0 0.052231 1 9526 9526 44.392 21.617 1 2055500 56124 10186 37714 38548 65199 65199 0.025787201405364613 RYKQDVERF 9 Unmodified _RYKQDVERF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2200012207031 3 414.219283 1239.63602 1.388 0.00057495 -0.1972 -8.1684E-05 1.1908 0.00049326 414.2191698816258 20.803 0.43907 18.11 17.882 18.321 -2.693 106 27 5 0 0 0 0.016448 3 11207 10999;11105;11207 67.081 36.377 1 192750000 56125 10186 37714 38548 65200;65201;65202 65202 0.025787201405364613 RYKQDVERF 9 Unmodified _RYKQDVERF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.8253173828125 2 620.825286 1239.63602 0.93635 0.00058131 0.45686 0.00028363 1.3932 0.00086494 620.8255543423297 20.81 0.24805 18.117 17.977 18.225 -2.693 28 15 3 0 0 0 0.091305 1 11084 11084 37.075 19.632 1 3748800 56126 10186 37714 38548 65203 65203 0.025787201405364613 RYKQDVERF 9 Unmodified _RYKQDVERF_ 0 0 0 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 ENSG00000198887|ENST00000361138|SMC5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 414.219283 1239.63602 -0.056382 -2.3355E-05 0.27388 0.00011345 0.2175 9.0091E-05 414.21950967991 18.981 0.14524 18.987 18.901 19.046 0.0060482 -0.020669 -0.0002956 NaN 46.022 21 7 4 NaN NaN NaN NaN 0 NaN NaN 0 2597400 56127 10186 37714 38548 0.025787201405364613 RYKQDVYLL 9 Unmodified _RYKQDVYLL_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000168710|O43865-2|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3360595703125 2 599.334956 1196.65536 0.96773 0.00058 -0.0612 -3.6679E-05 0.90653 0.00054332 599.3351032083574 47.566 0.37222 42.332 42.142 42.515 -5.2339 36 21 2 0 0 0 0.032796 2 29475 29475;29609 53.833 18.901 1 11166000 56128 6587;7793 37715 38549 65204;65205 65204 0.06489676431465341 RYKQDVYLL 9 Unmodified _RYKQDVYLL_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000168710|O43865-2|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8928833007812 3 399.892396 1196.65536 1.6609 0.00066417 0.56279 0.00022505 2.2237 0.00088923 399.89250439973546 47.56 0.41109 42.326 42.104 42.515 -5.2339 41 23 2 0 0 0 0.15471 1 29632 29632 32.037 14.174 1 14597000 56129 6587;7793 37715 38549 65206 65206 0.06489676431465341 RYKTQYEEL 9 Unmodified _RYKTQYEEL_ 0 0 0 ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR ENSG00000047410|ENST00000367478|TPR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.5425720214844 3 410.543544 1228.6088 NaN NaN NaN NaN NaN NaN NaN 29.13 1 29.068 28.568 29.568 -0.062159 0 0 0 0.7243 1 15058 15058 5.2969 0 1 56130 683 37716 38550 65207 65207 0.003641918095354413 RYKTTQLLF 9 Unmodified _RYKTTQLLF_ 0 0 0 nc|ENSG00000014123|O94874-3|UFL1;nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1 nc|ENSG00000014123|O94874-3|UFL1 nc|ENSG00000014123|O94874-3|UFL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.337890625 2 585.337498 1168.66044 1.4999 0.00087793 -1.0121 -0.00059244 0.48774 0.00028549 585.3368676659713 46.957 0.26393 46.923 46.712 46.976 -0.033421 20 12 2 0 0 0 0.1685 1 25277 25277 26.268 11.02 1 3121000 56131 483 37717 38551 65208 65208 0.08285980294067485 RYKWEYTYYSR 11 Unmodified _RYKWEYTYYSR_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 807.8887329101562 2 807.888615 1613.76268 NaN NaN NaN NaN NaN NaN NaN 68.851 1 68.37 67.87 68.87 -0.48071 0 0 0 0.9435 1 37634 37634 0 0 1 56132 9973 37718 38552 65209 65209 -0.01965398424954401 RYKYRRWRQWL 11 Unmodified _RYKYRRWRQWL_ 0 0 0 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 REV__nc|ENSG00000155542|Q8NE22-2|SETD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.97314453125 2 855.976225 1709.9379 NaN NaN NaN NaN NaN NaN NaN 101.23 1 101.19 100.69 101.69 -0.04216 0 0 0 0.9435 1 56239 56239 0 0 1 + 56133 21274 37719 38553 65210 65210 0.11132485950588489 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.3048095703125 2 531.303124 1060.5917 0.46638 0.00024779 0.59773 0.00031758 1.0641 0.00056536 531.3034126719471 66.276 0.31064 66.276 66.135 66.446 0 31 13 3 0 0 0 0.082934 1 36957 36957 47.749 7.799 1 2609000 56134 4236 37720 38554 65211 65211 0.06382315994369492 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3031005859375 2 531.303124 1060.5917 0.17 9.0322E-05 -0.68132 -0.00036198 -0.51131 -0.00027166 531.302517090716 66.691 0.77699 66.208 65.792 66.569 -0.48323 91 37 4 0 0 0 0.053952 1 36436 36436 56.177 8.4284 1 66128000 56135 4236 37720 38554 65212 65212 0.06382315994369492 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3035278320312 2 531.303124 1060.5917 0.80699 0.00042876 -0.5332 -0.00028329 0.27379 0.00014547 531.302685188968 84.218 0.70022 78.043 77.472 78.172 -6.1757 49 37 2 0 0 0 0.067618 1 55288 55288 51.63 7.8574 1 13933000 56136 4236 37720 38554 65213 65213 0.06382315994369492 RYLADLPTL 9 Unmodified _RYLADLPTL_ 0 0 0 nc|ENSG00000130695|Q6P2H3-4|CEP85;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 nc|ENSG00000130695|Q6P2H3-4|CEP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3032836914062 2 531.303124 1060.5917 0.10232 5.4362E-05 0.074759 3.972E-05 0.17708 9.4081E-05 531.3033127855323 85.058 1.1549 78.882 78.172 79.327 -6.1757 174 69 3 0 0 0 0.024189 2 55960 55826;55960 74.929 9.694 1 92362000 56137 4236 37720 38554 65214;65215 65215 0.06382315994369492 RYLAEKYEW 9 Unmodified _RYLAEKYEW_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8814392089844 3 419.880267 1256.61897 0.87983 0.00036942 0.60481 0.00025395 1.4846 0.00062337 419.880615034843 44.809 0.31175 39.957 39.863 40.175 -4.852 26 20 2 0 0 0 0.060956 1 27413 27413 42.312 31.414 1 8856400 56138 7651 37721 38555 65216 65216 0.0009279953474106151 RYLAEKYEW 9 Unmodified _RYLAEKYEW_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 419.880267 1256.61897 0.59454 0.00024964 0.35061 0.00014722 0.94515 0.00039685 419.8800752328742 40.461 0.2299 40.164 40.073 40.303 -0.29716 0.10339 -0.00022272 NaN 42.312 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1116600 56139 7651 37721 38555 0.0009279953474106151 RYLAHLAHL 9 Unmodified _RYLAHLAHL_ 0 0 0 ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2139587402344 3 365.213692 1092.61925 NaN NaN NaN NaN NaN NaN NaN 31.789 1 31.66 31.16 32.16 -0.12915 0 0 0 0.85359 1 16537 16537 1.0715 0 1 56140 14486 37722 38556 65217 65217 0.07664264045274649 RYLAHLAHL 9 Unmodified _RYLAHLAHL_ 0 0 0 ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2133483886719 3 365.213692 1092.61925 -0.29464 -0.00010761 0.1969 7.191E-05 -0.097744 -3.5697E-05 365.21352978543615 31.612 0.25346 31.642 31.499 31.753 0.030106 34 11 4 0 0 0 0.05483 1 16536 16536 43.772 27.623 1 5443500 56141 14486 37722 38556 65218 65218 0.07664264045274649 RYLAHLAHL 9 Unmodified _RYLAHLAHL_ 0 0 0 ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.2154846191406 3 365.213692 1092.61925 NaN NaN NaN NaN NaN NaN NaN 83.525 1 77.35 76.85 77.85 -6.1757 0 0 0 0.20976 1 54927 54927 29.841 19.041 1 56142 14486 37722 38556 65219 65219 0.07664264045274649 RYLAHLAHL 9 Unmodified _RYLAHLAHL_ 0 0 0 ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF ENST00000504152.5_1_6:30856506-30856812:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 365.213692 1092.61925 0.082347 3.0074E-05 0.44812 0.00016366 0.53047 0.00019374 365.2137949385388 31.741 0.099037 31.612 31.548 31.647 -0.12915 -0.015092 0.00025326 NaN 43.772 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 502000 56143 14486 37722 38556 0.07664264045274649 RYLAIAHHR 9 Unmodified _RYLAIAHHR_ 0 0 0 ENSG00000164604|ENST00000424100|GPR85;ENSG00000170837|ENST00000304411|GPR27 ENSG00000164604|ENST00000424100|GPR85 ENSG00000164604|ENST00000424100|GPR85 MSMS AL20221201_MKP_PDAC_01 4 379.5528259277344 3 379.552708 1135.63629 NaN NaN NaN NaN NaN NaN NaN 85.299 1 79.124 78.624 79.624 -6.1757 0 0 0 0.76439 1 56168 56168 4.5289 0 1 56144 7212 37723 38557 65220 65220 0.07390184651080745 RYLAKKKTK 9 Unmodified _RYLAKKKTK_ 0 0 0 nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;ENST00000484848.5_1_10:102255105-102258991:-|nuORF nc|ENSG00000075826|Q9NQW1-5|SEC31B nc|ENSG00000075826|Q9NQW1-5|SEC31B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2489624023438 3 379.248514 1134.72371 NaN NaN NaN NaN NaN NaN NaN 69.673 1 69.704 69.204 70.204 0.030914 0 0 0 0.86004 1 38310 38310 0.26902 0 1 56145 1170 37724 38558 65221 65221 0.1617396580197692 RYLALLETL 9 Unmodified _RYLALLETL_ 0 0 0 ENSG00000146828|ENST00000354161|SLC12A9 ENSG00000146828|ENST00000354161|SLC12A9 ENSG00000146828|ENST00000354161|SLC12A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3272705078125 2 546.326599 1090.63865 0.36714 0.00020058 0.66343 0.00036245 1.0306 0.00056303 546.3269668113378 79.138 0.34164 78.652 78.506 78.848 -0.48596 34 14 3 0 0 0 0.14 1 43333 43333 29.082 7.3349 1 1490900 56146 5798 37725 38559 65222 65222 0.09695175545539314 RYLALLETL 9 Unmodified _RYLALLETL_ 0 0 0 ENSG00000146828|ENST00000354161|SLC12A9 ENSG00000146828|ENST00000354161|SLC12A9 ENSG00000146828|ENST00000354161|SLC12A9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 546.326599 1090.63865 0.38301 0.00020925 -0.6067 -0.00033146 -0.22369 -0.00012221 546.3260785274962 78.558 0.3836 78.61 78.368 78.752 0.052452 -0.020642 -0.001061 NaN 29.082 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3304400 56147 5798 37725 38559 0.09695175545539314 RYLCLYPAMP 10 Unmodified _RYLCLYPAMP_ 0 0 0 ENST00000590923.5_2_19:10687899-10687995:-|nuORF ENST00000590923.5_2_19:10687899-10687995:-|nuORF ENST00000590923.5_2_19:10687899-10687995:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8750305175781 3 409.5402 1225.59877 -0.48609 -0.00019907 0.89605 0.00036697 0.40996 0.00016789 409.5406718933017 24.982 0.39969 24.982 24.802 25.202 0 111 36 4 0 0 0 0.66569 1 12810 12810 3.5871 0 1 7527700 56148 15693 37726 38560 65223 65223 -0.005004107210652364 RYLCRVEEM 9 Carbamidomethyl (C),Oxidation (M) _RYLC(Carbamidomethyl (C))RVEEM(Oxidation (M))_ RYLC(1)RVEEM RYLCRVEEM(1) RYLC(46)RVEEM RYLCRVEEM(46) 0 1 1 nc|ENSG00000158864|O75306-2|NDUFS2;ENSG00000158864|ENST00000676972|NDUFS2;ENST00000483804.5_1_1:161179060-161183980:+|nuORF nc|ENSG00000158864|O75306-2|NDUFS2 nc|ENSG00000158864|O75306-2|NDUFS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.8685302734375 3 424.533885 1270.57983 0.4245 0.00018021 0.82785 0.00035145 1.2523 0.00053166 424.53410634668535 22.893 0.26653 20.114 19.984 20.25 -2.7784 25 17 2 0 0 0 0.047714 1 12341 12341 45.74 32.125 1 7494800 56149 6615 37727 38561 65224 65224 652 1155 -0.04463992082764889 RYLCSSVSNR 10 Unmodified _RYLCSSVSNR_ 0 0 0 REV__ENST00000397560.6_1_7:139784896-139785067:-|nuORF REV__ENST00000397560.6_1_7:139784896-139785067:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5315551757812 3 395.532873 1183.57679 NaN NaN NaN NaN NaN NaN NaN 16.611 1 16.611 16.111 17.111 0 0 0 0 0.97855 1 8115 8115 1.4551 0 1 + 56150 26539 37728 38562 65225 65225 -0.007654991452682225 RYLDASNEL 9 Unmodified _RYLDASNEL_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7683715820312 2 540.769645 1079.52474 0.34087 0.00018433 2.0956 0.0011332 2.4365 0.0013176 540.7698476348296 37.127 0.30122 37.127 36.958 37.259 0 46 14 4 0 0 0 0.023481 2 19677 19677;19777 60.074 16.216 1 34129000 56151 3072 37729 38563 65226;65227 65226 -0.011843392873743142 RYLDASNEL 9 Unmodified _RYLDASNEL_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7702026367188 2 540.769645 1079.52474 0.64685 0.0003498 0.51371 0.0002778 1.1606 0.0006276 540.7697678917212 42.983 0.42766 38.298 38.072 38.499 -4.6846 78 27 4 0 0 0 0.023481 2 25920 25920;26069 60.074 22.1 1 84164000 56152 3072 37729 38563 65228;65229 65228 -0.011843392873743142 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8191528320312 2 574.819138 1147.62372 -0.022422 -1.2888E-05 0.16179 9.3001E-05 0.13937 8.0113E-05 574.8190641567064 71.269 0.33957 71.269 71.065 71.405 0 42 16 3 0 0 0 0.19349 2 39652 39652;39752 24.991 1.4324 1 4471200 56153 827 37730 38564 65230;65231 65230 0.055816836775193224 RYLDEINLL 9 Unmodified _RYLDEINLL_ 0 0 0 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 ENSG00000060558|ENST00000262958|GNA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8203125 2 574.819138 1147.62372 0.6782 0.00038984 -0.37957 -0.00021819 0.29863 0.00017166 574.8184386338306 71.678 0.41525 71.202 70.999 71.415 -0.47609 39 16 3 0 0 0 0.060956 2 39186 39186;39287 45.7 15.063 1 8079100 56154 827 37730 38564 65232;65233 65232 0.055816836775193224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(83)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.8209228515625 2 598.820824 1195.62709 0.16375 9.8059E-05 -0.3336 -0.00019977 -0.16984 -0.00010171 598.8206424087505 50.035 0.37702 50.035 49.905 50.282 0 46 17 3 0 0 0 0.0094097 2 27537 27537;27647 82.529 19.546 1 11582000 56155 5256 37731 38565 65234;65235 65234 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(42)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5499877929688 3 399.549641 1195.62709 0.18654 7.453E-05 -0.20823 -8.3199E-05 -0.021696 -8.6688E-06 399.5496402371128 50.069 0.44764 50.069 49.883 50.331 0 63 20 4 0 0 0 0.060956 1 27644 27644 42.312 32.548 1 13225000 56156 5256 37731 38565 65236 65236 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(53)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5496520996094 3 399.549641 1195.62709 0.88065 0.00035186 -0.96834 -0.0003869 -0.087691 -3.5037E-05 399.5493598829016 50.608 0.52406 50.195 49.87 50.394 -0.41351 96 25 5 0 0 0 0.033747 2 27229 27124;27229 53.317 37.567 1 57773000 56157 5256 37731 38565 65237;65238 65238 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(80)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3211059570312 2 598.820824 1195.62709 0.89799 0.00053774 -1.0127 -0.00060642 -0.1147 -6.8686E-05 598.8202688066984 50.441 0.46801 50.048 49.911 50.379 -0.3923 80 22 4 0 0 0 0.010301 1 27136 27136 79.596 30.042 1 38885000 56158 5256 37731 38565 65239 65239 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(54)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.82177734375 2 598.820824 1195.62709 1.2464 0.0007464 -1.7961 -0.0010755 -0.54967 -0.00032915 598.8201655570645 50.187 0.52863 50.138 49.967 50.495 -0.048824 79 25 5 0 0 0 0.032796 2 27176 27076;27176 53.833 17.504 1 8353000 56159 5256 37731 38565 65240;65241 65241 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(57)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5498352050781 3 399.549641 1195.62709 0.80241 0.0003206 -0.40725 -0.00016271 0.39516 0.00015789 399.54962254843815 56.577 0.45272 50.6 50.338 50.79 -5.9769 67 25 3 0 0 0 0.02676 1 36005 36005 57.108 36.236 1 34075000 56160 5256 37731 38565 65242 65242 970 0.037106104598706224 RYLDELMKL 9 Oxidation (M) _RYLDELM(Oxidation (M))KL_ RYLDELM(1)KL RYLDELM(42)KL 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8203735351562 2 598.820824 1195.62709 0.13459 8.0595E-05 -0.25942 -0.00015535 -0.12483 -7.4751E-05 598.8207002790964 56.569 0.39815 50.592 50.357 50.755 -5.9769 55 22 3 0 0 0 0.062454 1 36113 36113 41.956 14.327 1 30974000 56161 5256 37731 38565 65243 65243 970 0.037106104598706224 RYLDELMKL 9 Unmodified _RYLDELMKL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8239135742188 2 590.823366 1179.63218 0.49841 0.00029447 0.44626 0.00026366 0.94467 0.00055814 590.8233942467738 64.768 0.36726 64.283 64.102 64.47 -0.48512 54 16 4 0 0 0 0.025842 2 35284 35284;35392 57.722 15.882 1 13154000 56162 5256 37731 38566 65244;65245 65244 0.04954914322502191 RYLDELMKL 9 Unmodified _RYLDELMKL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2175903320312 3 394.218003 1179.63218 0.53398 0.0002105 -1.5867 -0.00062551 -1.0527 -0.000415 394.21798125490557 64.753 0.45371 64.267 63.949 64.403 -0.48512 51 20 4 0 0 0 0.009483 1 35303 35303 65.474 45.848 1 4580600 56163 5256 37731 38566 65246 65246 0.04954914322502191 RYLDELMKL 9 Unmodified _RYLDELMKL_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.218505859375 3 394.218003 1179.63218 1.342 0.00052903 -0.42446 -0.00016733 0.9175 0.0003617 394.21793198983676 94.011 0.38989 87.835 87.622 88.012 -6.1757 79 22 5 0 0 0 0.0090524 2 62309 62181;62309 69.338 47.748 1 191990000 56164 5256 37731 38566 65247;65248 65248 0.04954914322502191 RYLDGWNAIF 10 Unmodified _RYLDGWNAIF_ 0 0 0 ENST00000466602.1_1_2:219677084-219677513:+|nuORF;ENST00000494263.5_1_2:219646839-219678911:+|nuORF;ENSG00000135929|ENST00000258415|CYP27A1 ENST00000466602.1_1_2:219677084-219677513:+|nuORF ENST00000466602.1_1_2:219677084-219677513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.1965942382812 2 627.81693 1253.61931 0.53945 0.00033867 0.69411 0.00043578 1.2336 0.00077445 627.817798618248 80.608 0.20238 80.666 80.586 80.788 0.057587 11 7 2 0 0 0 0.51539 1 44601 44601 17.443 6.6187 1 2508000 56165 4761 37732 38567 65249 65249 0.0026421925460908824 RYLDGWNAIF 10 Unmodified _RYLDGWNAIF_ 0 0 0 ENST00000466602.1_1_2:219677084-219677513:+|nuORF;ENST00000494263.5_1_2:219646839-219678911:+|nuORF;ENSG00000135929|ENST00000258415|CYP27A1 ENST00000466602.1_1_2:219677084-219677513:+|nuORF ENST00000466602.1_1_2:219677084-219677513:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 627.8184814453125 2 627.81693 1253.61931 NaN NaN NaN NaN NaN NaN NaN 98.297 1 92.121 91.621 92.621 -6.1757 0 0 0 0.25043 1 65185 65185 38.615 4.213 1 56166 4761 37732 38567 65250 65250 0.0026421925460908824 RYLDKTEQW 9 Unmodified _RYLDKTEQW_ 0 0 0 CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5436096191406 3 413.543655 1237.60914 -0.037413 -1.5472E-05 0.42468 0.00017562 0.38727 0.00016015 413.54384756805666 31.244 0.26879 31.244 31.091 31.359 0 40 12 4 0 0 0 0.044011 1 16225 16225 37.075 26.275 1 13799000 + 56167 155;10579 37733 38568 65251 65251 -0.00016388470635320118 RYLDKTEQW 9 Unmodified _RYLDKTEQW_ 0 0 0 CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8121948242188 2 619.811845 1237.60914 0.29483 0.00018274 0.45312 0.00028085 0.74795 0.00046359 619.8122831134731 31.206 0.24822 31.206 31.091 31.339 0 27 11 3 0 0 0 0.025842 1 16241 16241 57.722 37.307 1 3444700 + 56168 155;10579 37733 38568 65252 65252 -0.00016388470635320118 RYLDKTEQW 9 Unmodified _RYLDKTEQW_ 0 0 0 CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5437927246094 3 413.543655 1237.60914 NaN NaN NaN NaN NaN NaN NaN 31.271 1 31.168 30.668 31.668 -0.10269 0 0 0 0.56093 1 16250 16250 13.615 8.7179 1 + 56169 155;10579 37733 38568 65253 65253 -0.00016388470635320118 RYLDKTEQW 9 Unmodified _RYLDKTEQW_ 0 0 0 CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5438842773438 3 413.543655 1237.60914 0.82121 0.00033961 -0.065971 -2.7282E-05 0.75524 0.00031233 413.54371403361216 35.384 0.48378 31.289 31.023 31.507 -4.0951 92 29 4 0 0 0 0.044011 2 20556 20431;20556 51.415 40.616 1 104230000 + 56170 155;10579 37733 38568 65254;65255 65255 -0.00016388470635320118 RYLDKTEQW 9 Unmodified _RYLDKTEQW_ 0 0 0 CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.8125610351562 2 619.811845 1237.60914 0.38881 0.00024099 -0.00084208 -5.2193E-07 0.38796 0.00024046 619.8118997946848 35.404 0.34452 31.299 31.11 31.455 -4.1053 54 20 3 0 0 0 0.0082981 2 20434 20434;20568 96.936 66.299 1 51577000 + 56171 155;10579 37733 38568 65256;65257 65256 -0.00016388470635320118 RYLDLFTNF 9 Unmodified _RYLDLFTNF_ 0 0 0 ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8070678710938 2 594.806031 1187.59751 0.34651 0.0002061 1.3653 0.00081209 1.7118 0.0010182 594.806967216845 83.183 0.44163 83.246 83.05 83.491 0.063171 47 16 4 0 0 0 0.0087873 2 45978 45978;46077 103.35 67.226 1 24670000 56172 1766 37734 38569 65258;65259 65258 0.011214145060421288 RYLDLFTNF 9 Unmodified _RYLDLFTNF_ 0 0 0 ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 ENSG00000100196|ENST00000216014|KDELR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8060913085938 2 594.806031 1187.59751 0.01075 6.3944E-06 0.8667 0.00051552 0.87745 0.00052191 594.8061113391187 99.045 0.11538 92.869 92.807 92.923 -6.1757 18 6 3 0 0 0 0.032796 1 65850 65850 53.833 31.097 1 81736000 56173 1766 37734 38569 65260 65260 0.011214145060421288 RYLDLFTNY 9 Unmodified _RYLDLFTNY_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENST00000594643.1_1_19:48893647-48894615:-|nuORF ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.8005981445312 2 602.803488 1203.59242 NaN NaN NaN NaN NaN NaN NaN 70.487 1 70.01 69.51 70.51 -0.47735 0 0 0 0.15231 1 38555 38555 36.506 18.36 1 56174 2322 37735 38570 65261 65261 -0.001228893565667022 RYLDLFTNY 9 Unmodified _RYLDLFTNY_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENST00000594643.1_1_19:48893647-48894615:-|nuORF ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.803466796875 2 602.803488 1203.59242 0.12831 7.7348E-05 0.53042 0.00031974 0.65873 0.00039709 602.8034222785475 69.906 0.33958 69.937 69.729 70.068 0.030914 38 17 3 0 0 0 0.010301 1 38428 38428 79.596 55.576 1 9457000 56175 2322 37735 38570 65262 65262 -0.001228893565667022 RYLDLFTNY 9 Unmodified _RYLDLFTNY_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENST00000594643.1_1_19:48893647-48894615:-|nuORF ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.8046264648438 2 602.803488 1203.59242 0.44438 0.00026787 1.2553 0.00075673 1.6997 0.0010246 602.8038761310413 91.627 0.44127 85.451 85.207 85.648 -6.1757 47 24 2 0 0 0 0.0086209 3 60599 60467;60599;60628 89.401 58.764 1 12470000 56176 2322 37735 38570 65263;65264;65265 65264 -0.001228893565667022 RYLDLFTSF 9 Unmodified _RYLDLFTSF_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2992553710938 2 581.300581 1160.58661 0.47773 0.0002777 -1.6086 -0.00093505 -1.1308 -0.00065735 581.2996533198739 85.519 0.29488 85.017 84.934 85.229 -0.5015 56 26 3 0 0 0 0.047788 2 46769 46769;46883 45.7 7.7256 1 3997100 56177 4803;16212 37736 38571 65266;65267 65266 0.012740121317619924 RYLDLFTSF 9 Unmodified _RYLDLFTSF_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3004150390625 2 581.300581 1160.58661 0.27796 0.00016158 -0.18577 -0.00010799 0.092184 5.3587E-05 581.300327442995 84.97 0.3754 85.033 84.838 85.214 0.063171 53 15 4 0 0 0 0.017075 2 47076 46969;47076 66.457 30.33 1 212010000 56178 4803;16212 37736 38571 65268;65269 65269 0.012740121317619924 RYLDLFTSF 9 Unmodified _RYLDLFTSF_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2;ENST00000462052.1_1_7:6513727-6523688:-|nuORF;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3004760742188 2 581.300581 1160.58661 0.99616 0.00057907 2.2222 0.0012918 3.2184 0.0018708 581.3000459353761 99.347 0.22851 93.171 93.048 93.276 -6.1757 58 14 6 0 0 0 0.012668 1 66081 66081 72.968 24.622 1 922980000 56179 4803;16212 37736 38571 65270 65270 0.012740121317619924 RYLDLILNDF 10 Unmodified _RYLDLILNDF_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.3469848632812 2 641.34552 1280.67649 0.23514 0.00015081 0.857 0.00054963 1.0921 0.00070044 641.34604525256 89.506 0.30556 89.004 88.843 89.149 -0.50171 38 12 4 0 0 0 0.32493 1 48906 48906 26.021 9.8716 1 2916900 56180 903 37737 38572 65271 65271 0.04737641740325671 RYLDLILNDF 10 Unmodified _RYLDLILNDF_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.3468627929688 2 641.34552 1280.67649 0.29288 0.00018784 0.78223 0.00050168 1.0751 0.00068952 641.3460820606018 88.929 0.32317 88.977 88.864 89.187 0.047852 17 11 2 0 0 0 0.0015532 1 49462 49462 110.79 55.29 1 17140000 56181 903 37737 38572 65272 65272 0.04737641740325671 RYLDLILNDF 10 Unmodified _RYLDLILNDF_ 0 0 0 ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF ENSG00000065427|ENST00000302445|KARS1 ENSG00000065427|ENST00000302445|KARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.3473510742188 2 641.34552 1280.67649 1.1258 0.000722 0.73471 0.0004712 1.8605 0.0011932 641.3461506591196 100.05 0.19724 93.879 93.78 93.978 -6.1757 22 12 2 0 0 0 4.6694E-07 1 66797 66797 136.39 53.863 1 107650000 56182 903 37737 38572 65273 65273 0.04737641740325671 RYLDLLTTW 9 Unmodified _RYLDLLTTW_ 0 0 0 nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8228759765625 2 590.821681 1179.62881 0.46173 0.0002728 0.388 0.00022924 0.84973 0.00050204 590.8219442918814 83.175 0.43852 83.238 82.918 83.357 0.063171 36 16 4 0 0 0 0.025842 1 46038 46038 57.722 33.701 1 4234900 56183 9467 37738 38573 65274 65274 0.04617987540109425 RYLDLLTTW 9 Unmodified _RYLDLLTTW_ 0 0 0 nc|ENSG00000186283|Q9H497-2|TOR3A;ENSG00000186283|ENST00000367627|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A nc|ENSG00000186283|Q9H497-2|TOR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8209228515625 2 590.821681 1179.62881 0.63119 0.00037292 1.0194 0.00060226 1.6505 0.00097518 590.8219461529227 99.142 0.1002 92.967 92.908 93.009 -6.1757 10 5 2 0 0 0 0.036857 1 65949 65949 51.63 32.373 1 63729000 56184 9467 37738 38573 65275 65275 0.04617987540109425 RYLDPFTQM 9 Unmodified _RYLDPFTQM_ 0 0 0 REV__ENSG00000102743|ENST00000338625|SLC25A15 REV__ENSG00000102743|ENST00000338625|SLC25A15 MSMS AL20221201_MKP_PDAC_01 4 390.8595581054688 3 390.858586 1169.55393 NaN NaN NaN NaN NaN NaN NaN 20.324 1 17.631 17.131 18.131 -2.693 0 0 0 0.82739 1 10826 10826 2.4985 0.21571 1 + 56185 18250 37739 38574 65276 65276 -0.024065182627509785 RYLDRNVDK 9 Unmodified _RYLDRNVDK_ 0 0 0 REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5457763671875 3 393.5474 1177.62037 0.18216 7.1688E-05 -2.5157 -0.00099004 -2.3335 -0.00091835 393.54634903308374 50.062 0.33587 50.062 49.946 50.282 0 18 15 2 0 0 0 0.51218 1 27577 27577 4.1895 0.86986 1 2434200 + 56186 19435 37740 38575 65277 65277 0.038664336235115115 RYLDRNVDK 9 Unmodified _RYLDRNVDK_ 0 0 0 REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF REV__ENST00000461547.5_1_20:56185389-56190069:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 393.5474 1177.62037 0.18216 7.1688E-05 -2.5157 -0.00099004 -2.3335 -0.00091835 393.54634903308374 50.062 0.33587 50.062 49.946 50.282 0 0.023236 7.641E-05 NaN 4.1895 18 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2434200 + 56187 19435 37740 38575 0.038664336235115115 RYLDSLKAIVF 11 Unmodified _RYLDSLKAIVF_ 0 0 0 nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN nc|ENSG00000166451|Q96H22-4|CENPN nc|ENSG00000166451|Q96H22-4|CENPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2591247558594 3 442.258967 1323.75507 0.34713 0.00015352 0.20523 9.0764E-05 0.55236 0.00024428 442.25883814679105 72.517 0.32012 72.558 72.42 72.74 0.041725 49 14 4 0 0 0 0.43683 2 39915 39915;40023 19.615 14.899 1 14946000 56188 7490 37741 38576 65278;65279 65278 0.10614494045398715 RYLDSLKAIVF 11 Unmodified _RYLDSLKAIVF_ 0 0 0 nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN nc|ENSG00000166451|Q96H22-4|CENPN nc|ENSG00000166451|Q96H22-4|CENPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.8859252929688 2 662.884813 1323.75507 0.37022 0.00024541 0.58672 0.00038893 0.95694 0.00063434 662.8852203456701 72.517 0.32012 72.558 72.42 72.74 0.041725 43 14 4 0 0 0 0.11523 1 39925 39925 42.312 32.239 1 12145000 56189 7490 37741 38576 65280 65280 0.10614494045398715 RYLDSLKAIVF 11 Unmodified _RYLDSLKAIVF_ 0 0 0 nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN nc|ENSG00000166451|Q96H22-4|CENPN nc|ENSG00000166451|Q96H22-4|CENPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8860473632812 2 662.884813 1323.75507 1.1212 0.00074324 0.85992 0.00057003 1.9811 0.0013133 662.8852357660484 98.327 0.2678 92.151 91.985 92.253 -6.1757 36 17 3 0 0 0 0.2905 1 65197 65197 32.898 20.657 1 16959000 56190 7490 37741 38576 65281 65281 0.10614494045398715 RYLDSLKAIVF 11 Unmodified _RYLDSLKAIVF_ 0 0 0 nc|ENSG00000166451|Q96H22-4|CENPN;ENSG00000166451|ENST00000305850|CENPN;nc|ENSG00000166451|Q96H22-3|CENPN nc|ENSG00000166451|Q96H22-4|CENPN nc|ENSG00000166451|Q96H22-4|CENPN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2189331054688 3 442.258967 1323.75507 1.6124 0.00071312 0.23239 0.00010278 1.8448 0.00081589 442.25900629025136 98.25 0.34079 92.074 91.939 92.28 -6.1757 35 22 2 0 0 0 0.29793 1 65228 65228 10.527 7.6842 1 11392000 56191 7490 37741 38576 65282 65282 0.10614494045398715 RYLDVSILGKF 11 Unmodified _RYLDVSILGKF_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF ENSG00000165819|ENST00000298717|METTL3 ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5879516601562 3 437.587084 1309.73942 0.58414 0.00025561 -0.42163 -0.0001845 0.16251 7.1113E-05 437.58701168731136 72.061 0.38188 72.1 71.893 72.275 0.039024 42 18 4 0 0 0 0.018218 1 39636 39636 42.862 30.635 1 10490000 56192 7395 37742 38577 65283 65283 0.09694207528355037 RYLDVSILGKF 11 Unmodified _RYLDVSILGKF_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF ENSG00000165819|ENST00000298717|METTL3 ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.87744140625 2 655.876988 1309.73942 0.72785 0.00047738 -0.90652 -0.00059457 -0.17867 -0.00011719 655.8764108320878 72.081 0.25628 72.12 71.934 72.19 0.039024 21 12 2 0 0 0 0.055321 1 39641 39641 49.742 25.952 1 6283600 56193 7395 37742 38577 65284 65284 0.09694207528355037 RYLDVSILGKF 11 Unmodified _RYLDVSILGKF_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF ENSG00000165819|ENST00000298717|METTL3 ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.9226684570312 3 437.587084 1309.73942 1.5109 0.00066117 -0.041485 -1.8153E-05 1.4695 0.00064301 437.5870626377152 95.784 0.23405 89.608 89.496 89.73 -6.1757 37 14 3 0 0 0 0.004841 1 63402 63402 62.894 42.023 1 41604000 56194 7395 37742 38577 65285 65285 0.09694207528355037 RYLDVSILGKF 11 Unmodified _RYLDVSILGKF_ 0 0 0 ENSG00000165819|ENST00000298717|METTL3;nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF ENSG00000165819|ENST00000298717|METTL3 ENSG00000165819|ENST00000298717|METTL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.8787841796875 2 655.876988 1309.73942 1.2244 0.00080305 -0.53348 -0.0003499 0.6909 0.00045315 655.8772313806006 95.792 0.20575 89.617 89.508 89.714 -6.1757 28 12 3 0 0 0 4.9583E-15 1 63430 63430 135.87 93.919 1 28661000 56195 7395 37742 38577 65286 65286 0.09694207528355037 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2483520507812 3 412.248403 1233.72338 -0.04228 -1.743E-05 -0.3216 -0.00013258 -0.36388 -0.00015001 412.2482331780742 56.514 0.96807 56.445 56.23 57.198 -0.068741 145 48 5 0 0 0 0.016448 4 30704 30704;30804;30906;31012 67.081 42.199 1 720210000 56196 4136 37743 38578 65287;65288;65289;65290 65287 0.11586546082116911 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.3701782226562 2 617.868966 1233.72338 0.36882 0.00022788 -0.83701 -0.00051716 -0.46818 -0.00028928 617.8684608809825 56.538 0.21978 56.469 56.339 56.559 -0.068737 20 10 2 0 0 0 0.02676 1 30738 30738 70.332 42.703 1 8128300 56197 4136 37743 38578 65291 65291 0.11586546082116911 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2490234375 3 412.248403 1233.72338 NaN NaN NaN NaN NaN NaN NaN 57.523 1 57.457 56.957 57.957 -0.066036 0 0 0 0.74422 1 31312 31312 7.9454 6.039 1 56198 4136 37743 38578 65292 65292 0.11586546082116911 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2488098144531 3 412.248403 1233.72338 1.2197 0.00050284 0.23744 9.7882E-05 1.4572 0.00060072 412.24846311501756 93.813 1.6396 87.637 87.432 89.071 -6.1757 271 94 4 0 0 0 0.024507 9 62161 62029;62161;62285;62412;62542;62669;62794;62913;63079 59.052 39.427 1 584510000 56199 4136 37743 38578 65293;65294;65295;65296;65297;65298;65299;65300;65301 65294 0.11586546082116911 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.870361328125 2 617.868966 1233.72338 0.82656 0.00051071 0.41565 0.00025682 1.2422 0.00076753 617.8690850999207 93.827 0.46071 87.652 87.486 87.947 -6.1757 61 26 3 0 0 0 0.01861 1 62178 62178 79.596 35.738 1 40519000 56200 4136 37743 38578 65302 65302 0.11586546082116911 RYLDWIKKI 9 Unmodified _RYLDWIKKI_ 0 0 0 nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8;nc|ENSG00000129455|O60259-2|KLK8 nc|ENSG00000129455|O60259-3|KLK8 nc|ENSG00000129455|O60259-3|KLK8 MSMS AL20221201_MKP_PDAC_01 4 617.8695678710938 2 617.868966 1233.72338 NaN NaN NaN NaN NaN NaN NaN 94.297 1 88.121 87.621 88.621 -6.1757 0 0 0 0.12961 1 62454 62454 49.554 15.153 1 56201 4136 37743 38578 65303 65303 0.11586546082116911 RYLDWRALM 9 Unmodified _RYLDWRALM_ 0 0 0 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 ENSG00000170903|ENST00000301919|MSANTD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8848876953125 3 408.549976 1222.6281 1.2551 0.00051279 0.099001 4.0447E-05 1.3541 0.00055323 408.54996985594863 95.196 0.18923 89.02 88.931 89.12 -6.1757 16 10 2 0 0 0 0.011291 1 63052 63052 62.869 49.35 1 9006600 56202 8040 37744 38579 65304 65304 0.025688696194265503 RYLEAALRL 9 Unmodified _RYLEAALRL_ 0 0 0 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.82958984375 2 552.82984 1103.64513 0.76244 0.0004215 -1.2455 -0.00068856 -0.48307 -0.00026706 552.829063314733 50.704 0.71631 50.65 50.47 51.187 -0.053871 98 35 5 0 0 0 0.043414 2 27463 27365;27463 51.415 17.313 1 77039000 56203 5367 37745 38580 65305;65306 65306 0.09745113496887825 RYLEAALRL 9 Unmodified _RYLEAALRL_ 0 0 0 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8885498046875 3 368.888986 1103.64513 0.62987 0.00023235 -2.0194 -0.00074494 -1.3895 -0.00051258 368.88810809648373 50.713 0.51642 50.659 50.49 51.007 -0.053871 53 25 3 0 0 0 0.030212 1 27389 27389 55.235 31.445 1 13909000 56204 5367 37745 38580 65307 65307 0.09745113496887825 RYLEAALRL 9 Unmodified _RYLEAALRL_ 0 0 0 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8292236328125 2 552.82984 1103.64513 0.1936 0.00010703 -0.34086 -0.00018844 -0.14726 -8.1411E-05 552.8295716886291 84.804 0.94681 78.628 77.93 78.877 -6.1757 118 54 4 0 0 0 0.18178 3 55503 55503;55735;55867 26.021 6.7637 1 99027000 56205 5367 37745 38580 65308;65309;65310 65308 0.09745113496887825 RYLEAALRL 9 Unmodified _RYLEAALRL_ 0 0 0 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 ENSG00000141696|ENST00000393928|P3H4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8888549804688 3 368.888986 1103.64513 0.74016 0.00027304 0.2639 9.735E-05 1.0041 0.00037039 368.8890064308729 84.796 0.55873 78.62 78.318 78.877 -6.1757 66 32 3 0 0 0 0.044042 2 55727 55727;55852 47.732 30.289 1 44167000 56206 5367 37745 38580 65311;65312 65311 0.09745113496887825 RYLEALAML 9 Unmodified _RYLEALAML_ 0 0 0 ENST00000460090.5_1_5:68581171-68616103:-|nuORF;nc|ENSG00000183323|Q86Z20-2|CCDC125;ENSG00000183323|ENST00000396496|CCDC125 ENST00000460090.5_1_5:68581171-68616103:-|nuORF ENST00000460090.5_1_5:68581171-68616103:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2998046875 2 540.299527 1078.5845 1.2925 0.00069832 -0.54249 -0.0002931 0.74998 0.00040522 540.2992578967486 98.14 0.22481 91.965 91.862 92.087 -6.1757 27 14 3 0 0 0 0.07087 1 65057 65057 39.95 7.164 1 38695000 56207 9137 37746 38581 65313 65313 0.04835260122285945 RYLECISCGSS 11 Unmodified _RYLECISCGSS_ 0 0 0 ENST00000594364.1_1_19:44156314-44160865:-|nuORF;nc|ENSG00000011422|Q03405-2|PLAUR;nc|ENSG00000011422|Q03405-3|PLAUR;ENSG00000011422|ENST00000340093|PLAUR ENST00000594364.1_1_19:44156314-44160865:-|nuORF ENST00000594364.1_1_19:44156314-44160865:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5145263671875 3 406.514491 1216.52164 -0.45947 -0.00018678 0.0062074 2.5234E-06 -0.45327 -0.00018426 406.51458945181406 29.114 0.26 29.114 28.982 29.242 0 31 12 3 0 0 0 0.65846 1 15048 15048 4.1166 0.2403 1 8139100 56208 446 37747 38582 65314 65314 -0.07795673728060137 RYLEDSKPPT 10 Unmodified _RYLEDSKPPT_ 0 0 0 ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2124938964844 3 402.543544 1204.6088 -0.76345 -0.00030732 1.4412 0.00058016 0.67779 0.00027284 402.5436634309903 27.776 0.45499 27.776 27.469 27.924 0 29 17 3 0 0 0 0.65282 1 14305 14305 4.7159 0 1 3042500 56209 11974 37748 38583 65315 65315 0.01468191809522068 RYLEEKTIA 9 Unmodified _RYLEEKTIA_ 0 0 0 REV__ENSG00000165997|ENST00000377275|ARL5B REV__ENSG00000165997|ENST00000377275|ARL5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.8121948242188 2 561.811313 1121.60807 NaN NaN NaN NaN NaN NaN NaN 24.885 1 24.885 24.385 25.385 0 0 0 0 0.51965 1 12732 12732 21.747 0 1 + 56210 22074 37749 38584 65316 65316 0.05213397160491695 RYLEGTSCI 9 Carbamidomethyl (C) _RYLEGTSC(Carbamidomethyl (C))I_ RYLEGTSC(1)I RYLEGTSC(86)I 0 1 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7671508789062 2 549.766049 1097.51754 -0.30235 -0.00016622 0.42633 0.00023438 0.12398 6.8162E-05 549.7662208782939 34.698 0.26738 34.698 34.56 34.827 0 28 13 3 0 0 0 0.0090524 1 18263 18263 85.642 39.942 1 32704000 56211 10835 37750 38585 65317 65317 956 -0.02731395159457861 RYLEGTSCI 9 Carbamidomethyl (C) _RYLEGTSC(Carbamidomethyl (C))I_ RYLEGTSC(1)I RYLEGTSC(66)I 0 1 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7662963867188 2 549.766049 1097.51754 0.34423 0.00018925 -1.0203 -0.00056093 -0.67608 -0.00037168 549.7658181550833 39.771 0.64007 35.242 34.98 35.62 -4.5294 185 47 6 0 0 0 0.017075 2 23501 23501;23630 66.457 23.32 1 1189700000 56212 10835 37750 38585 65318;65319 65318 956 -0.02731395159457861 RYLEGTSCI 9 Carbamidomethyl (C) _RYLEGTSC(Carbamidomethyl (C))I_ 0 1 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 549.766049 1097.51754 -0.30432 -0.00016731 1.1703 0.00064337 0.86595 0.00047607 549.7665699631596 34.803 0.13618 34.612 34.564 34.7 -0.19131 -0.043063 0.00073523 NaN 85.642 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 770350 56213 10835 37750 38585 956 -0.02731395159457861 RYLEGTSCI 9 Unmodified _RYLEGTSCI_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2552490234375 2 521.255317 1040.49608 0.59725 0.00031132 -0.65555 -0.00034171 -0.058302 -3.039E-05 521.2550494569253 45.04 0.45406 40.188 39.918 40.372 -4.852 70 29 3 0 0 0 0.047788 2 27473 27473;27613 45.7 11.512 1 52278000 56214 10835 37750 38586 65320;65321 65320 -0.022547801881728446 RYLEINIQQ 9 Unmodified _RYLEINIQQ_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2170715332031 3 392.8839 1175.62987 -0.45831 -0.00018006 -0.45345 -0.00017815 -0.91176 -0.00035822 392.88362162667386 24.935 0.22743 24.935 24.823 25.051 0 45 27 2 0 0 0 0.50598 1 12753 12753 7.1017 3.1573 1 2876900 + 56215 20787 37751 38587 65322 65322 0.04908201909051968 RYLEINIQQ 9 Unmodified _RYLEINIQQ_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.8839 1175.62987 -0.45831 -0.00018006 -0.45345 -0.00017815 -0.91176 -0.00035822 392.88362162667386 24.935 0.22743 24.935 24.823 25.051 0 -0.13385 -0.00021413 NaN 7.1017 45 27 2 NaN NaN NaN NaN 0 NaN NaN 0 2876900 + 56216 20787 37751 38587 0.04908201909051968 RYLEINIQQ 9 Unmodified _RYLEINIQQ_ 0 0 0 REV__ENSG00000145723|ENST00000399004|GIN1 REV__ENSG00000145723|ENST00000399004|GIN1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 392.8839 1175.62987 0.86043 0.00033805 0.70851 0.00027836 1.5689 0.00061641 392.88397835092616 28.351 0.22338 25.203 25.059 25.282 -3.1482 0.13385 0.0011554 NaN 7.1017 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5904700 + 56217 20787 37751 38587 0.04908201909051968 RYLEKNVKL 9 Unmodified _RYLEKNVKL_ 0 0 0 ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 ENST00000523948.5_1_8:56686169-56737149:+|nuORF ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.236328125 3 388.236274 1161.68699 -0.42364 -0.00016447 -0.015261 -5.9248E-06 -0.4389 -0.0001704 388.2360527113083 24.545 0.27382 24.545 24.405 24.678 0 30 15 3 0 0 0 0.21377 1 12526 12526 21.799 12.035 1 3559400 56218 4948 37752 38588 65323 65323 0.11261669185432766 RYLEKNVKL 9 Unmodified _RYLEKNVKL_ 0 0 0 ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 ENST00000523948.5_1_8:56686169-56737149:+|nuORF ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2364807128906 3 388.236274 1161.68699 0.18285 7.0988E-05 0.82815 0.00032152 1.011 0.0003925 388.23634495419844 24.813 0.21 24.811 24.688 24.898 -0.0016766 15 8 3 0 0 0 0.0088231 1 12688 12688 103.82 48.575 1 6118000 56219 4948 37752 38588 65324 65324 0.11261669185432766 RYLEKNVKL 9 Unmodified _RYLEKNVKL_ 0 0 0 ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 ENST00000523948.5_1_8:56686169-56737149:+|nuORF ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2371826171875 3 388.236274 1161.68699 0.11584 4.4972E-05 -0.55357 -0.00021492 -0.43773 -0.00016994 388.2360690961668 24.473 0.18915 24.497 24.37 24.559 0.024429 15 7 3 0 0 0 0.0082995 1 12609 12609 92.201 44.128 1 9814900 56220 4948 37752 38588 65325 65325 0.11261669185432766 RYLEKNVKL 9 Unmodified _RYLEKNVKL_ 0 0 0 ENST00000523948.5_1_8:56686169-56737149:+|nuORF;ENSG00000137574|ENST00000260129|TGS1 ENST00000523948.5_1_8:56686169-56737149:+|nuORF ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2366333007812 3 388.236274 1161.68699 0.76828 0.00029828 -0.55659 -0.00021609 0.2117 8.2188E-05 388.2362066599809 27.857 0.64082 24.709 24.343 24.983 -3.1482 90 33 5 0 0 0 0.010362 2 15511 15391;15511 79.427 38.08 1 169910000 56221 4948 37752 38588 65326;65327 65327 0.11261669185432766 RYLEKPME 8 Oxidation (M) _RYLEKPM(Oxidation (M))E_ RYLEKPM(1)E RYLEKPM(56)E 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2705688476562 2 541.270967 1080.52738 NaN NaN NaN NaN NaN NaN NaN 28.401 1 28.401 27.901 28.901 0 0 0 0 0.38147 1 14668 14668 56.177 21.775 1 56222 7784 37753 38589 65328 65328 1328 -0.00966207154078802 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(50)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8776245117188 3 398.877758 1193.61144 -0.7793 -0.00031085 -1.0187 -0.00040635 -1.798 -0.0007172 398.8774589782316 28.408 0.55212 28.408 28.209 28.761 0 123 29 6 0 0 0 0.040733 1 14613 14613 49.527 25.737 1 872290000 56223 7784 37754 38590 65329 65329 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(48)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8126220703125 2 597.812999 1193.61144 -0.78816 -0.00047117 -1.1243 -0.00067209 -1.9124 -0.0011433 597.8124373151763 28.41 0.51139 28.41 28.231 28.742 0 110 27 6 0 0 0 0.044296 1 14614 14614 47.594 22.195 1 570490000 56224 7784 37754 38590 65330 65330 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(82)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.8123168945312 2 597.812999 1193.61144 0.62262 0.00037221 -0.83423 -0.00049871 -0.2116 -0.0001265 597.8126676864966 28.335 0.29202 28.273 28.126 28.418 -0.062159 38 11 4 0 0 0 0.0094802 2 14588 14588;14688 81.915 49.13 1 57372000 56225 7784 37754 38590 65331;65332 65331 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(86)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.8791198730469 3 398.877758 1193.61144 0.59619 0.00023781 -0.66299 -0.00026445 -0.066798 -2.6644E-05 398.8775198913567 28.329 0.37517 28.267 28.097 28.473 -0.062159 47 14 5 0 0 0 0.0090383 1 14591 14591 85.764 49.258 1 81926000 56226 7784 37754 38590 65333 65333 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(53)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.8780212402344 3 398.877758 1193.61144 0.013071 5.2138E-06 0.22708 9.0576E-05 0.24015 9.579E-05 398.87794620604086 28.266 0.31814 28.295 28.106 28.424 0.029564 35 12 4 0 0 0 0.033466 1 14666 14666 53.47 29.68 1 23925000 56227 7784 37754 38590 65334 65334 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(65)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8141479492188 2 597.812999 1193.61144 0.040107 2.3976E-05 0.81074 0.00048467 0.85085 0.00050865 597.8135994910508 28.263 0.24226 28.293 28.134 28.377 0.029564 28 9 4 0 0 0 0.018061 1 14674 14674 65.474 42.737 1 17183000 56228 7784 37754 38590 65335 65335 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(88)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.81396484375 2 597.812999 1193.61144 0.45546 0.00027228 -0.53332 -0.00031883 -0.077867 -4.655E-05 597.8127543346525 32.184 0.78104 28.328 28.015 28.796 -3.8562 144 43 5 0 0 0 0.0087399 1 18141 18141 88.364 55.578 1 835970000 56229 7784 37754 38590 65336 65336 1328 0.022383239428108936 RYLEKPMEI 9 Oxidation (M) _RYLEKPM(Oxidation (M))EI_ RYLEKPM(1)EI RYLEKPM(61)EI 0 0 1 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8777160644531 3 398.877758 1193.61144 1.0816 0.00043142 -0.75493 -0.00030112 0.32665 0.00013029 398.87746246131263 32.176 0.80042 28.319 27.995 28.796 -3.8562 166 44 6 0 0 0 0.022653 2 18143 18143;18262 60.899 39.309 1 1457699999.9999998 56230 7784 37754 38590 65337;65338 65337 1328 0.022383239428108936 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5467224121094 3 393.54612 1177.61653 -0.009101 -3.5816E-06 0.39668 0.00015611 0.38758 0.00015253 393.546202134724 37.779 0.63609 37.779 37.493 38.129 0 73 31 3 0 0 0 0.029718 3 20049 20008;20049;20157 51.415 32.053 1 26466000 56231 7784 37754 38591 65339;65340;65341 65340 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.8154296875 2 589.815541 1177.61653 0.041486 2.4469E-05 0.1749 0.00010316 0.21639 0.00012763 589.8157236243634 37.751 0.52001 37.751 37.529 38.049 0 70 25 4 0 0 0 0.011291 2 20156 20048;20156 76.825 36.875 1 32928000 56232 7784 37754 38591 65342;65343 65343 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5460205078125 3 393.54612 1177.61653 0.047521 1.8702E-05 -0.64831 -0.00025514 -0.60079 -0.00023644 393.5459501511678 38.121 0.57211 37.849 37.66 38.232 -0.27133 72 26 4 0 0 0 0.08691 2 19987 19987;20086 47.594 22.603 1 17365000 56233 7784 37754 38591 65344;65345 65344 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.8162841796875 2 589.815541 1177.61653 0.013176 7.7715E-06 -0.51195 -0.00030196 -0.49877 -0.00029419 589.8150629299024 38.107 0.6161 37.835 37.638 38.255 -0.27133 79 28 5 0 0 0 0.021948 2 20098 19997;20098 61.602 29.296 1 18837000 56234 7784 37754 38591 65346;65347 65347 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5467224121094 3 393.54612 1177.61653 0.8423 0.00033148 1.1611 0.00045696 2.0034 0.00078844 393.546909931753 50.638 0.20643 50.224 50.132 50.338 -0.41351 21 9 4 0 0 0 0.49272 1 27275 27275 4.897 0.95262 1 5138600 56235 7784 37754 38591 65348 65348 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5358581542969 3 393.54612 1177.61653 0.88405 0.00034792 0.63291 0.00024908 1.517 0.00059699 393.54640673517366 50.407 0.16182 50.015 49.971 50.133 -0.3923 12 7 2 0 0 0 0.21473 1 27206 27206 2.4985 0 1 3482600 56236 7784 37754 38591 65349 65349 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.8174438476562 2 589.815541 1177.61653 0.95599 0.00056386 -1.1078 -0.00065343 -0.15185 -8.9566E-05 589.81496571211 42.662 0.82252 37.977 37.648 38.47 -4.6846 208 54 5 0 0 0 0.018061 3 26020 25741;25876;26020 65.474 38.237 1 1462299999.9999998 56237 7784 37754 38591 65350;65351;65352 65352 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5465087890625 3 393.54612 1177.61653 1.2949 0.00050958 -0.66762 -0.00026274 0.62724 0.00024685 393.5458808238719 42.67 0.87995 37.986 37.648 38.528 -4.6846 218 56 6 0 0 0 0.010301 3 25752 25752;25888;26080 64.927 41.137 1 1277900000 56238 7784 37754 38591 65353;65354;65355 65353 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5474243164062 3 393.54612 1177.61653 0.85202 0.00033531 0.57027 0.00022443 1.4223 0.00055973 393.546364279635 43.973 0.73135 39.208 38.65 39.381 -4.7648 64 46 2 0 0 0 0.017075 4 26906 26473;26598;26735;26906 61.09 36.099 1 14340000 56239 7784 37754 38591 65356;65357;65358;65359 65359 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5469970703125 3 393.54612 1177.61653 1.0098 0.00039739 0.89996 0.00035418 1.9097 0.00075156 393.5465660526047 45.721 0.30964 40.766 40.613 40.922 -4.9549 31 20 2 0 0 0 0.36964 1 28141 28141 13.615 6.9845 1 6529400 56240 7784 37754 38591 65360 65360 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 589.8168334960938 2 589.815541 1177.61653 NaN NaN NaN NaN NaN NaN NaN 44.828 1 39.976 39.476 40.476 -4.852 0 0 0 0.050854 1 27415 27415 57.249 9.6547 1 56241 7784 37754 38591 65361 65361 0.03482627805442462 RYLEKPMEI 9 Unmodified _RYLEKPMEI_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 589.815541 1177.61653 -0.033128 -1.954E-05 0.52954 0.00031233 0.49641 0.00029279 589.8159078622242 37.68 0.26719 37.697 37.592 37.859 0.017036 -0.11838 0.0012064 NaN 76.825 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4657500 56242 7784 37754 38591 0.03482627805442462 RYLEKSGVL 9 Unmodified _RYLEKSGVL_ 0 0 0 ENSG00000214114|ENST00000397572|MYCBP;ENST00000495043.5_1_1:39330344-39338774:-|nuORF ENSG00000214114|ENST00000397572|MYCBP ENSG00000214114|ENST00000397572|MYCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.8076782226562 2 532.808574 1063.60259 -0.28661 -0.00015271 -0.60758 -0.00032372 -0.89419 -0.00047643 532.8082432099707 29.774 0.18531 29.774 29.662 29.847 0 15 11 2 0 0 0 0.011671 1 15442 15442 75.761 31.903 1 4596700 56243 10482 37755 38592 65362 65362 0.07333718368658992 RYLEKSIKM 9 Unmodified _RYLEKSIKM_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8899230957031 3 389.889998 1166.64816 0.79395 0.00030955 1.4201 0.00055367 2.214 0.00086322 389.890129471373 28.061 0.36745 24.913 24.751 25.119 -3.1482 53 19 4 0 0 0 0.02676 1 15588 15588 57.108 36.527 1 17565000 56244 3691 37756 38593 65363 65363 0.07150620559377785 RYLEKYEK 8 Unmodified _RYLEKYEK_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8733520507812 3 376.873113 1127.59751 -0.32245 -0.00012152 1.4716 0.00055462 1.1492 0.0004331 376.8736364000662 31.748 0.20014 31.748 31.64 31.84 0 20 9 3 0 0 0 0.77186 1 16567 16567 8.1555 1.9637 1 928270 56245 9728 37757 38594 65364 65364 0.038814145060541705 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8258056640625 2 611.824952 1221.63535 0.2886 0.00017658 0.73768 0.00045133 1.0263 0.00062791 611.8249978135708 25.184 0.13983 25.167 25.091 25.231 -0.017006 7 5 2 0 0 0 0.1605 1 12903 12903 51.415 20.147 1 2963300 56246 10298;10315;10398;16517 37758 38595 65365 65365 0.03339880700855247 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8243408203125 2 611.824952 1221.63535 0.43869 0.0002684 -0.71758 -0.00043903 -0.27889 -0.00017063 611.8247271999354 24.857 0.19456 24.882 24.756 24.951 0.024429 16 8 2 0 0 0 0.12064 1 12809 12809 57.249 19.074 1 6574500 56247 10298;10315;10398;16517 37758 38595 65366 65366 0.03339880700855247 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2193603515625 3 408.21906 1221.63535 -0.038079 -1.5545E-05 1.127 0.00046008 1.089 0.00044453 408.2198406992275 24.831 0.21766 24.855 24.756 24.974 0.024429 15 9 2 0 0 0 0.18128 1 12830 12830 35.996 23.755 1 8695800 56248 10298;10315;10398;16517 37758 38595 65367 65367 0.03339880700855247 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2205505371094 3 408.21906 1221.63535 0.7382 0.00030135 -0.52469 -0.00021419 0.21351 8.7158E-05 408.21873670294553 28.327 0.71435 25.179 24.896 25.61 -3.1482 161 37 6 0 0 0 0.0054279 3 15655 15655;15772;15893 97.284 70.195 1 1407000000 56249 10298;10315;10398;16517 37758 38595 65368;65369;65370 65368 0.03339880700855247 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.825439453125 2 611.824952 1221.63535 0.55 0.0003365 -0.12334 -7.5464E-05 0.42665 0.00026104 611.8248572864943 28.335 0.6958 25.187 24.896 25.592 -3.1482 134 36 5 0 0 0 2.439E-07 3 15667 15667;15785;15905 158.08 75.547 1 785070000 56250 10298;10315;10398;16517 37758 38595 65371;65372;65373 65371 0.03339880700855247 RYLENGKETL 10 Unmodified _RYLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 408.21906 1221.63535 0.23167 9.4572E-05 4.1047 0.0016756 4.3363 0.0017702 408.220945560272 25.201 0.13983 25.184 25.091 25.231 -0.017006 0.11147 0.0051354 NaN 97.284 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4238000 56251 10298;10315;10398;16517 37758 38595 0.03339880700855247 RYLENQTFRF 10 Unmodified _RYLENQTFRF_ 0 0 0 nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A nc|ENSG00000068796|O00139-2|KIF2A nc|ENSG00000068796|O00139-2|KIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.5699157714844 3 458.570204 1372.68878 0.71814 0.00032932 -0.17439 -7.997E-05 0.54375 0.00024935 458.5700794800203 47.696 0.24403 47.658 47.561 47.805 -0.038643 35 11 5 0 0 0 6.7445E-07 1 25694 25694 105.35 88.297 1 8360000 56252 987 37759 38596 65374 65374 0.0173467820334281 RYLENYDAI 9 Unmodified _RYLENYDAI_ 0 0 0 ENST00000570285.1_1_13:76140977-76197422:+|nuORF;ENST00000563635.5_1_13:76123956-76287321:+|nuORF;ENSG00000118939|ENST00000377595|UCHL3 ENST00000570285.1_1_13:76140977-76197422:+|nuORF ENST00000570285.1_1_13:76140977-76197422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2883911132812 2 578.785296 1155.55604 0.10526 6.0922E-05 1.0297 0.000596 1.135 0.00065693 578.7854777144966 44.031 0.18103 44.031 43.93 44.111 0 17 10 2 0 0 0 0.0099157 1 23938 23938 88.954 39.021 1 25116000 56253 3401 37760 38597 65375 65375 -0.01551766253282949 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.3299560546875 2 600.330205 1198.64586 0.030524 1.8324E-05 -0.6427 -0.00038583 -0.61218 -0.00036751 600.3298141091921 39.456 0.35295 39.456 39.263 39.616 0 48 16 4 0 0 0 0.033747 2 21084 21084;21201 57.722 19.752 1 58596000 56254 7784 37761 38598 65376;65377 65376 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5557861328125 3 400.555895 1198.64586 0.092217 3.6938E-05 -0.38033 -0.00015234 -0.28811 -0.00011541 400.555782911759 39.452 0.41333 39.452 39.202 39.616 0 64 19 5 0 0 0 0.020316 1 21095 21095 63.227 36.004 1 87330000 56255 7784 37761 38598 65378 65378 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.3313598632812 2 600.330205 1198.64586 0.016517 9.9157E-06 -0.49054 -0.00029449 -0.47402 -0.00028457 600.3298745022366 39.743 0.44814 39.446 39.22 39.668 -0.29716 79 21 5 0 0 0 0.033747 2 20895 20895;21001 66.457 12.624 1 203170000 56256 7784 37761 38598 65379;65380 65379 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5557250976562 3 400.555895 1198.64586 0.017364 6.9554E-06 -0.54779 -0.00021942 -0.53042 -0.00021246 400.5556591432667 39.723 0.56208 39.426 39.197 39.759 -0.29716 108 26 6 0 0 0 0.020316 3 20906 20896;20906;21012 63.227 39.438 1 330360000 56257 7784 37761 38598 65381;65382;65383 65382 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5547180175781 3 400.555895 1198.64586 0.097494 3.9052E-05 0.1264 5.0632E-05 0.2239 8.9684E-05 400.5559072683135 39.378 0.33267 39.39 39.238 39.571 0.011456 44 15 4 0 0 0 0.044042 2 20922 20922;21024 47.732 26.142 1 39962000 56258 7784 37761 38598 65384;65385 65384 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3309326171875 2 600.330205 1198.64586 0.14298 8.5834E-05 0.22465 0.00013486 0.36763 0.0002207 600.3303361859653 39.384 0.31104 39.395 39.217 39.528 0.011456 44 14 4 0 0 0 0.0088668 2 20927 20927;21025 96.111 39.934 1 22464000 56259 7784 37761 38598 65386;65387 65386 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3311157226562 2 600.330205 1198.64586 -0.052333 -3.1417E-05 -0.027318 -1.64E-05 -0.07965 -4.7816E-05 600.3301631028252 44.59 0.66293 39.738 39.452 40.115 -4.852 189 50 5 0 0 0 0.0085213 3 27100 27100;27233;27354 117.84 57.764 1 751280000 56260 7784 37761 38598 65388;65389;65390 65388 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5558471679688 3 400.555895 1198.64586 0.71275 0.0002855 -0.098963 -3.964E-05 0.61379 0.00024586 400.5558508330503 44.591 0.65408 39.739 39.461 40.115 -4.852 216 49 6 0 0 0 0.030212 4 27108 27108;27232;27353;27493 55.235 33.644 1 1108900000 56261 7784 37761 38598 65391;65392;65393;65394 65391 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.832275390625 2 600.330205 1198.64586 0.48767 0.00029276 -0.055578 -3.3365E-05 0.43209 0.0002594 600.3304054001227 55.347 0.36683 49.426 49.193 49.56 -5.9211 35 22 2 0 0 0 0.011739 2 35285 35140;35285 92.653 38.821 1 14486000 56262 7784 37761 38598 65395;65396 65396 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3302001953125 2 600.330205 1198.64586 -0.28888 -0.00017342 -0.11899 -7.1435E-05 -0.40787 -0.00024486 600.3300923207183 56.125 1.0057 50.148 49.837 50.843 -5.9769 77 58 2 0 0 0 0.011211 3 35856 35562;35708;35856 83.429 27.252 1 28962000 56263 7784 37761 38598 65397;65398;65399 65399 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.55615234375 3 400.555895 1198.64586 0.51875 0.00020779 -0.45044 -0.00018043 0.068304 2.736E-05 400.55566770445614 56.186 1.1328 50.209 49.763 50.896 -5.9769 100 65 2 0 0 0 0.011211 2 35614 35614;35887 77.049 52.796 1 34852000 56264 7784 37761 38598 65400;65401 65400 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3309326171875 2 600.330205 1198.64586 0.15846 9.5126E-05 -0.24644 -0.00014795 -0.087985 -5.282E-05 600.3300866662926 57.208 0.9474 51.18 50.548 51.496 -6.0275 82 54 2 0 0 0 0.0088823 3 36506 36365;36506;36637 103.82 49.991 1 21645000 56265 7784 37761 38598 65402;65403;65404 65403 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5560913085938 3 400.555895 1198.64586 0.3436 0.00013763 -0.38949 -0.00015601 -0.045889 -1.8381E-05 400.5560294133574 57.931 0.29208 51.904 51.77 52.062 -6.0275 19 16 2 0 0 0 0.0087399 1 37101 37101 88.364 60.13 1 21130000 56266 7784 37761 38598 65405 65405 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5553588867188 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 55.272 1 49.351 48.851 49.851 -5.9211 0 0 0 0.10415 1 35166 35166 42.312 28.094 1 56267 7784 37761 38598 65406 65406 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5560607910156 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 55.524 1 49.603 49.103 50.103 -5.9211 0 0 0 0.029307 1 35356 35356 67.081 54.853 1 56268 7784 37761 38598 65407 65407 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 600.3318481445312 2 600.330205 1198.64586 NaN NaN NaN NaN NaN NaN NaN 55.606 1 49.685 49.185 50.185 -5.9211 0 0 0 0.033505 1 35412 35412 79.596 31.25 1 56269 7784 37761 38598 65408 65408 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5565490722656 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 55.701 1 49.78 49.28 50.28 -5.9211 0 0 0 0.019227 1 35486 35486 79.427 52.339 1 56270 7784 37761 38598 65409 65409 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 600.3316650390625 2 600.330205 1198.64586 NaN NaN NaN NaN NaN NaN NaN 56.428 1 50.451 49.951 50.951 -5.9769 0 0 0 0.096094 1 36002 36002 55.503 17.327 1 56271 7784 37761 38598 65410 65410 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.555908203125 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 56.46 1 50.483 49.983 50.983 -5.9769 0 0 0 0.025508 1 36026 36026 71.708 44.485 1 56272 7784 37761 38598 65411 65411 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5560913085938 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 56.681 1 50.704 50.204 51.204 -5.9769 0 0 0 0.012739 1 36191 36191 88.364 60.13 1 56273 7784 37761 38598 65412 65412 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5561828613281 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 56.884 1 50.907 50.407 51.407 -5.9769 0 0 0 0.046779 1 36338 36338 59.052 45.438 1 56274 7784 37761 38598 65413 65413 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5562133789062 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 57.067 1 51.09 50.59 51.59 -5.9769 0 0 0 0.037345 1 36478 36478 63.227 43.602 1 56275 7784 37761 38598 65414 65414 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5567016601562 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 57.439 1 51.412 50.912 51.912 -6.0275 0 0 0 0.097684 1 36735 36735 43.982 22.392 1 56276 7784 37761 38598 65415 65415 0.05447908145947622 RYLEQLHQL 9 Unmodified _RYLEQLHQL_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.L188*|1|0.03|ENSG00000168610|chr17:42337846-42337846|G/-|frameshift_variant nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MSMS AL20221201_MKP_PDAC_01 4 400.5563659667969 3 400.555895 1198.64586 NaN NaN NaN NaN NaN NaN NaN 57.682 1 51.655 51.155 52.155 -6.0275 0 0 0 0.083147 1 36903 36903 47.732 31.166 1 56277 7784 37761 38598 65416 65416 0.05447908145947622 RYLERGESI 9 Unmodified _RYLERGESI_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8682250976562 3 374.86825 1121.58292 -0.34975 -0.00013111 0.16808 6.3008E-05 -0.18167 -6.8103E-05 374.86834561975843 23.769 0.2312 23.769 23.641 23.873 0 28 11 3 0 0 0 0.078314 1 12136 12136 35.612 21.394 1 3447500 56278 901 37762 38599 65417 65417 0.026993423579142473 RYLERGESI 9 Unmodified _RYLERGESI_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8684387207031 3 374.86825 1121.58292 1.0294 0.0003859 -0.13055 -4.8939E-05 0.89889 0.00033696 374.8683967431082 27.176 0.23213 24.14 23.966 24.199 -3.0365 18 11 2 0 0 0 0.013609 1 15002 15002 57.108 39.665 1 14884000 56279 901 37762 38599 65418 65418 0.026993423579142473 RYLERLIKL 9 Unmodified _RYLERLIKL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.9242858886719 3 401.923919 1202.74993 1.0315 0.00041457 -0.20473 -8.2287E-05 0.82673 0.00033228 401.923805682667 46.591 0.36357 46.557 46.39 46.753 -0.033421 52 17 4 0 0 0 0.047194 1 25029 25029 46.022 15.319 1 54049000 56280 8173 37763 38600 65419 65419 0.1566623497344608 RYLERLIKL 9 Unmodified _RYLERLIKL_ 0 0 0 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 ENSG00000172009|ENST00000307741|THOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.2579956054688 3 401.923919 1202.74993 1.3246 0.00053238 -0.013608 -5.4693E-06 1.311 0.00052691 401.9237668087076 95.4 0.72153 89.224 88.787 89.508 -6.1757 92 41 3 0 0 0 0.033747 4 63346 62973;63095;63214;63346 53.317 16.242 1 18182000 56281 8173 37763 38600 65420;65421;65422;65423 65423 0.1566623497344608 RYLEVMRKL 9 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ RYLEVM(1)RKL RYLEVM(63)RKL 0 0 1 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5692749023438 3 408.569147 1222.68561 -0.035302 -1.4424E-05 -0.81485 -0.00033292 -0.85015 -0.00034735 408.5686963627772 25.045 0.17975 25.069 24.951 25.13 0.024429 12 7 2 0 0 0 0.020316 1 12925 12925 63.227 38.237 1 41374000 56282 3427 37764 38601 65424 65424 610 0.08317711825020524 RYLEVMRKL 9 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ RYLEVM(1)RKL RYLEVM(61)RKL 0 0 1 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5682983398438 3 408.569147 1222.68561 -0.03074 -1.2559E-05 -0.25357 -0.0001036 -0.28431 -0.00011616 408.9032993687398 25.209 0.14787 25.233 25.167 25.314 0.024429 17 9 3 0 0 0 0.022461 1 13039 13039 61.09 32.595 1 35525000 56283 3427 37764 38601 65425 65425 610 0.08317711825020524 RYLEVMRKL 9 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ RYLEVM(1)RKL RYLEVM(41)RKL 0 0 1 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5697631835938 3 408.569147 1222.68561 0.89476 0.00036557 -0.36683 -0.00014988 0.52793 0.0002157 408.5691390186038 28.748 0.43951 25.6 25.34 25.779 -3.1482 44 21 4 0 0 0 0.067618 1 16009 16009 40.725 40.725 1 30048000 56284 3427 37764 38601 65426 65426 610 0.08317711825020524 RYLEVMRKL 9 Oxidation (M) _RYLEVM(Oxidation (M))RKL_ RYLEVM(1)RKL RYLEVM(44)RKL 0 0 1 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MSMS AL20221201_MKP_PDAC_01 4 408.5689392089844 3 408.569147 1222.68561 NaN NaN NaN NaN NaN NaN NaN 28.85 1 25.702 25.202 26.202 -3.1482 0 0 0 0.096094 1 16127 16127 44.392 21.734 1 56285 3427 37764 38601 65427 65427 610 0.08317711825020524 RYLEVMRKL 9 Unmodified _RYLEVMRKL_ 0 0 0 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2388305664062 3 403.237509 1206.6907 0.48324 0.00019486 0.50919 0.00020532 0.99243 0.00040018 403.5719768183815 41.27 0.27298 36.662 36.528 36.801 -4.6079 34 16 3 0 0 0 0.0087399 1 24734 24734 88.364 66.827 1 18605000 56286 3427 37764 38602 65428 65428 0.09562015687629355 RYLEVMRKL 9 Unmodified _RYLEVMRKL_ 0 0 0 nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA nc|ENSG00000119383|Q15257-4|PTPA nc|ENSG00000119383|Q15257-4|PTPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5727844238281 3 403.237509 1206.6907 1.1751 0.00047383 -0.2492 -0.00010049 0.92588 0.00037335 403.23741501838253 81.558 1.17 75.383 74.713 75.883 -6.1757 108 66 3 0 0 0 0.0086493 5 53509 53246;53375;53509;53645;53779 101.54 73.915 1 31588000 56287 3427 37764 38602 65429;65430;65431;65432;65433 65431 0.09562015687629355 RYLFLFNNM 9 Oxidation (M) _RYLFLFNNM(Oxidation (M))_ RYLFLFNNM(1) RYLFLFNNM(59) 0 0 1 nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4;nc|ENSG00000139132|Q96M96-2|FGD4;ENST00000464083.5_1_6:36982408-36995936:+|nuORF;ENST00000493087.5_1_12:32755237-32793464:+|nuORF;ENST00000494343.5_1_6:36981367-36995936:+|nuORF;ENSG00000146192|ENST00000274963|FGD2 nc|ENSG00000139132|Q96M96|FGD4 nc|ENSG00000139132|Q96M96|FGD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.31005859375 2 617.307884 1232.60121 0.35602 0.00021977 0.010094 6.2313E-06 0.36611 0.00022601 617.3079358249634 72.841 0.20392 72.883 72.74 72.944 0.041733 20 9 3 0 0 0 0.024882 1 40109 40109 58.679 25.893 1 3650600 56288 5125 37765 38603 65434 65434 940 -0.005782389917612818 RYLFVVDRL 9 Unmodified _RYLFVVDRL_ 0 0 0 ENSG00000118242|ENST00000263268|MREG;nc|ENSG00000118242|Q8N565-2|MREG ENSG00000118242|ENST00000263268|MREG ENSG00000118242|ENST00000263268|MREG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8466186523438 2 590.84549 1179.67643 0.25879 0.00015291 -0.0019148 -1.1314E-06 0.25688 0.00015177 590.8456750484811 61.014 0.25902 60.97 60.825 61.084 -0.04351 22 12 3 0 0 0 0.033587 1 33296 33296 53.404 22.136 1 4425100 56289 3360 37766 38604 65435 65435 0.0937768653097919 RYLGEALLL 9 Unmodified _RYLGEALLL_ 0 0 0 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3143310546875 2 524.313492 1046.61243 0.19306 0.00010123 -0.47948 -0.0002514 -0.28642 -0.00015017 524.3133473536985 70.652 0.35274 70.175 70.015 70.368 -0.47736 62 29 3 0 0 0 0.14 1 38704 38704 29.082 4.4077 1 9747000 56290 5952 37767 38605 65436 65436 0.09098906374038052 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.8341674804688 2 545.834591 1089.65463 0.28012 0.0001529 -0.23894 -0.00013042 0.041181 2.2478E-05 545.8345269685261 48.296 0.26953 47.924 47.791 48.061 -0.37172 34 13 3 0 0 0 0.05447 1 25887 25887 43.858 16.229 1 12593000 56291 4399 37768 38606 65437 65437 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2258911132812 3 364.225486 1089.65463 0.44164 0.00016086 0.22638 8.2454E-05 0.66802 0.00024331 364.2255487333468 48.325 0.26953 47.953 47.791 48.061 -0.37172 28 13 3 0 0 0 0.10734 1 25893 25893 23.79 0 1 11712000 56292 4399 37768 38606 65438 65438 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8356323242188 2 545.834591 1089.65463 0.44884 0.00024499 0.63458 0.00034637 1.0834 0.00059136 545.8348053903559 48.017 0.33607 47.978 47.827 48.164 -0.038643 54 16 4 0 0 0 0.028475 2 25848 25848;25956 56.177 18.001 1 52609000 56293 4399 37768 38606 65439;65440 65439 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2265625 3 364.225486 1089.65463 0.37304 0.00013587 0.6221 0.00022658 0.99514 0.00036245 364.22568177832983 48.03 0.37891 47.991 47.805 48.184 -0.038643 50 18 4 0 0 0 0.10734 1 25850 25850 23.79 4.4278 1 33159000 56294 4399 37768 38606 65441 65441 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8352661132812 2 545.834591 1089.65463 1.1393 0.00062187 -0.17979 -9.8136E-05 0.95951 0.00052374 545.8343682253324 53.832 0.28014 48.028 47.879 48.16 -5.8042 30 17 2 0 0 0 0.039985 1 34035 34035 49.933 20.851 1 12063000 56295 4399 37768 38606 65442 65442 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.835205078125 2 545.834591 1089.65463 1.0154 0.00055426 -0.11244 -6.1371E-05 0.90299 0.00049289 545.8345005213575 86.15 0.82388 79.974 79.479 80.303 -6.1757 120 45 3 0 0 0 0.044011 3 56618 56618;56746;56872 47.749 17.819 1 69416000 56296 4399 37768 38606 65443;65444;65445 65443 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.225830078125 3 364.225486 1089.65463 1.7845 0.00064997 -0.53097 -0.00019339 1.2536 0.00045658 364.225163738322 86.209 0.75663 80.034 79.566 80.322 -6.1757 95 41 3 0 0 0 0.10734 2 56797 56797;56927 29.841 10.479 1 40829000 56297 4399 37768 38606 65446;65447 65446 0.11338881782398857 RYLGKVLEL 9 Unmodified _RYLGKVLEL_ 0 0 0 nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH;ENST00000573641.1_1_17:2598433-2598937:-|nuORF nc|ENSG00000132361|O75153|CLUH nc|ENSG00000132361|O75153|CLUH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 545.834591 1089.65463 0.28012 0.0001529 -0.23894 -0.00013042 0.041181 2.2478E-05 545.8345269685261 48.296 0.26953 47.924 47.791 48.061 -0.37172 -0.052387 -0.00034439 NaN 56.177 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 12593000 56298 4399 37768 38606 0.11338881782398857 RYLGSLQP 8 Unmodified _RYLGSLQP_ 0 0 0 nc|ENSG00000143207|Q8NHY2-3|COP1 nc|ENSG00000143207|Q8NHY2-3|COP1 nc|ENSG00000143207|Q8NHY2-3|COP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2622680664062 2 467.261259 932.507966 1.3034 0.00060902 0.48435 0.00022632 1.7877 0.00083534 467.2613308184614 33.777 0.46773 29.792 29.555 30.022 -3.9853 77 25 4 0 0 0 0.50673 1 19429 19429 34.102 3.4659 1 22150000 56299 16240 37769 38607 65448 65448 0.03901204617318399 RYLHGLQKF 9 Unmodified _RYLHGLQKF_ 0 0 0 ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF ENST00000261597.8_1_18:2571510-2573058:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8887329101562 3 387.889097 1160.64546 0.17431 6.7615E-05 -0.092969 -3.6062E-05 0.081345 3.1553E-05 387.889139057274 27.409 0.20251 27.438 27.331 27.534 0.028664 18 8 3 0 0 0 0.05447 1 14228 14228 33.445 25.968 1 8962400 56300 11247 37770 38608 65449 65449 0.0715653321674381 RYLHKPYL 8 Unmodified _RYLHKPYL_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8783264160156 3 363.87831 1088.6131 1.3101 0.0004767 -0.72123 -0.00026244 0.58883 0.00021426 363.8782918696858 22.331 0.36885 19.596 19.412 19.781 -2.7348 34 19 2 0 0 0 0.79887 1 12096 12096 7.2892 0.18751 1 4670100 56301 4754 37771 38609 65450 65450 0.0723374581373264 RYLHKPYLI 9 Unmodified _RYLHKPYLI_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5732727050781 3 401.572998 1201.69716 -0.18902 -7.5906E-05 0.89927 0.00036112 0.71025 0.00028522 401.57344721065846 33.164 0.56678 33.192 32.936 33.503 0.028931 91 24 5 0 0 0 0.13231 1 17468 17468 29.841 19.69 1 35471000 56302 4754 37772 38610 65451 65451 0.10438276910645072 RYLHKPYLI 9 Unmodified _RYLHKPYLI_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.573486328125 3 401.572998 1201.69716 0.57417 0.00023057 1.5703 0.00063059 2.1445 0.00086116 401.5735584401033 85.615 0.53157 79.439 79.196 79.727 -6.1757 74 30 3 0 0 0 0.20507 2 56512 56384;56512 22.658 10.617 1 89273000 56303 4754 37772 38610 65452;65453 65453 0.10438276910645072 RYLHLAAKL 9 Unmodified _RYLHLAAKL_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2262573242188 3 362.225709 1083.6553 -0.013034 -4.7214E-06 0.33121 0.00011997 0.31817 0.00011525 362.225978539137 33.54 0.40748 33.569 33.361 33.769 0.028934 36 17 4 0 0 0 0.018301 1 17624 17624 59.368 33.348 1 7542400 56304 955 37773 38611 65454 65454 0.11681721222112174 RYLHLAAKL 9 Unmodified _RYLHLAAKL_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54579003-54603452:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2268371582031 3 362.225709 1083.6553 1.6258 0.00058892 -0.7263 -0.00026309 0.89954 0.00032584 362.2253711695204 83.791 0.54462 77.615 77.403 77.948 -6.1757 46 28 2 0 0 0 0.07087 2 55115 55115;55246 37.075 27.31 1 9228600 56305 955 37773 38611 65455;65456 65455 0.11681721222112174 RYLHLYSHSF 10 Unmodified _RYLHLYSHSF_ 0 0 0 REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF REV__ENST00000511816.1_1_17:46928876-46929999:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.5593566894531 3 441.559528 1321.65676 NaN NaN NaN NaN NaN NaN NaN 16.177 1 13.62 13.12 14.12 -2.557 0 0 0 0.98914 1 8361 8361 0.77653 0 1 + 56306 28163 37774 38612 65457 65457 0.008793105202357765 RYLHSHHFL 9 Unmodified _RYLHSHHFL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8810424804688 3 403.880713 1208.62031 -0.09547 -3.8558E-05 1.1042 0.00044597 1.0087 0.00040741 403.8809786975944 19.95 0.23544 19.958 19.872 20.108 0.0078487 27 11 4 0 0 0 0.013041 1 10169 10169 65.474 49.325 1 3252200 56307 7270 37775 38613 65458 65458 0.024344784141703713 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8682556152344 3 397.868362 1190.58326 -0.65893 -0.00026217 0.068522 2.7263E-05 -0.59041 -0.0002349 397.86839059669666 33.971 0.28122 33.971 33.822 34.103 0 36 13 4 0 0 0 0.30444 1 17826 17826 19.144 11.667 1 14400000 56308 7729 37776 38614 65459 65459 -0.004412379222458185 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.298828125 2 596.298904 1190.58326 -0.6331 -0.00037752 0.14943 8.9103E-05 -0.48367 -0.00028841 596.2991330589267 33.981 0.20389 33.981 33.841 34.044 0 21 9 3 0 0 0 0.13008 1 17847 17847 42.312 20.776 1 6349700 56309 7729 37776 38614 65460 65460 -0.004412379222458185 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.8684997558594 3 397.868362 1190.58326 -0.2318 -9.2226E-05 0.72047 0.00028665 0.48867 0.00019443 397.86856059662904 34.119 0.27597 33.928 33.77 34.046 -0.19132 32 10 4 0 0 0 0.25982 1 17784 17784 25.997 19.367 1 10643000 56310 7729 37776 38614 65461 65461 -0.004412379222458185 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.3001098632812 2 596.298904 1190.58326 -0.18633 -0.00011111 0.9907 0.00059076 0.80437 0.00047965 596.2996074063744 34.12 0.22495 33.929 33.795 34.02 -0.19131 21 8 3 0 0 0 0.10406 1 17806 17806 45.74 33.208 1 2636500 56311 7729 37776 38614 65462 65462 -0.004412379222458185 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8680419921875 3 397.868362 1190.58326 -0.04177 -1.6619E-05 0.69873 0.000278 0.65696 0.00026138 397.8683321295339 33.847 0.18643 33.876 33.745 33.931 0.028934 15 7 3 0 0 0 0.53722 1 17826 17826 9.2438 7.1578 1 1686300 56312 7729 37776 38614 65463 65463 -0.004412379222458185 RYLHVEGGNF 10 Unmodified _RYLHVEGGNF_ 0 0 0 ENST00000514380.5_1_4:26322378-26431729:+|nuORF;nc|ENSG00000168214|Q06330-5|RBPJ;nc|ENSG00000168214|Q06330-4|RBPJ;nc|ENSG00000168214|Q06330-6|RBPJ;ENSG00000168214|ENST00000355476|RBPJ;nc|ENSG00000168214|Q06330|RBPJ;ENST00000506903.1_1_4:26422193-26426401:+|nuORF;nc|ENSG00000168214|Q06330-3|RBPJ;nc|ENSG00000168214|Q06330-2|RBPJ ENST00000514380.5_1_4:26322378-26431729:+|nuORF ENST00000514380.5_1_4:26322378-26431729:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8682861328125 3 397.868362 1190.58326 0.45571 0.00018131 -0.16827 -6.6948E-05 0.28745 0.00011437 397.8682338684078 38.653 0.43173 34.284 34.03 34.461 -4.3689 72 27 3 0 0 0 0.25982 2 22872 22734;22872 25.997 17.553 1 63124000 56313 7729 37776 38614 65464;65465 65465 -0.004412379222458185 RYLHVTSLL 9 Unmodified _RYLHVTSLL_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.8861694335938 3 367.885353 1100.63423 1.1703 0.00043053 0.68962 0.0002537 1.8599 0.00068423 367.88567194769155 50.375 0.40925 50.326 50.066 50.475 -0.048828 34 19 3 0 0 0 0.31356 1 27244 27244 16.566 2.951 1 1641100 56314 670 37777 38615 65466 65466 0.08793711122621062 RYLHVTSLL 9 Unmodified _RYLHVTSLL_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.32470703125 2 551.324391 1100.63423 1.2453 0.00068658 -0.32421 -0.00017874 0.92112 0.00050783 551.3242319178121 50.377 0.22245 50.328 50.191 50.413 -0.048824 15 10 2 0 0 0 0.15882 1 27245 27245 22.736 0 1 1119200 56315 670 37777 38615 65467 65467 0.08793711122621062 RYLHVTSLL 9 Unmodified _RYLHVTSLL_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MSMS AL20221201_MKP_PDAC_01 4 551.3244018554688 2 551.324391 1100.63423 NaN NaN NaN NaN NaN NaN NaN 90.938 1 84.763 84.263 85.263 -6.1757 0 0 0 0.20097 1 60097 60097 39.95 9.7249 1 56316 670 37777 38615 65468 65468 0.08793711122621062 RYLIEEGFR 9 Unmodified _RYLIEEGFR_ 0 0 0 REV__ENSG00000118507|ENST00000431975|AKAP7 REV__ENSG00000118507|ENST00000431975|AKAP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8797607421875 3 394.880379 1181.61931 NaN NaN NaN NaN NaN NaN NaN 39.376 1 39.388 38.888 39.888 0.011452 0 0 0 0.6306 1 20970 20970 7.609 0 1 + 56317 19156 37778 38616 65469 65469 0.03576219254614443 RYLINSYDF 9 Unmodified _RYLINSYDF_ 0 0 0 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.761474609375 2 595.795663 1189.57677 0.39991 0.00023826 -1.493 -0.00088953 -1.0931 -0.00065127 596.2966078820923 59.654 0.26483 59.163 59.007 59.272 -0.49079 17 12 2 0 0 0 0.17345 1 32445 32445 32.786 13.529 1 1127300 56318 8607 37779 38617 65470 65470 -0.010431758736331176 RYLIVHQQI 9 Unmodified _RYLIVHQQI_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.564697265625 3 390.564502 1168.67168 -0.22738 -8.8805E-05 0.92038 0.00035947 0.693 0.00027066 390.5649169064281 35.881 0.18443 35.906 35.806 35.99 0.024967 16 8 2 0 0 0 0.12424 1 19000 19000 22.658 16.424 1 2347800 56319 10798 37780 38618 65471 65471 0.09408802388225013 RYLIVHQQI 9 Unmodified _RYLIVHQQI_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3430786132812 2 585.343115 1168.67168 0.17246 0.00010095 0.37025 0.00021672 0.54271 0.00031767 585.3432673788739 35.871 0.16361 35.896 35.806 35.969 0.024971 14 7 3 0 0 0 0.23158 1 19005 19005 20.454 8.8133 1 1112000 56320 10798 37780 38618 65472 65472 0.09408802388225013 RYLIVHQQI 9 Unmodified _RYLIVHQQI_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.0718078613281 3 390.564502 1168.67168 1.379 0.00053858 -0.27206 -0.00010626 1.1069 0.00043232 390.56439561022614 40.818 0.24173 36.289 36.097 36.339 -4.5294 21 14 2 0 0 0 0.11314 1 24368 24368 38.176 25.935 1 6955800 56321 10798 37780 38618 65473 65473 0.09408802388225013 RYLIVHQQI 9 Unmodified _RYLIVHQQI_ 0 0 0 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 ENSG00000256087|ENST00000221315|ZNF432 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 390.564502 1168.67168 -0.48804 -0.00019061 2.2195 0.00086686 1.7315 0.00067625 390.5652373052422 36.232 0.1193 35.983 35.927 36.046 -0.2497 -0.076556 0.0021048 NaN 38.176 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 503870 56322 10798 37780 38618 0.09408802388225013 RYLKICYL 8 Unmodified _RYLKICYL_ 0 0 0 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 ENSG00000124818|ENST00000371211|OPN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2215270996094 3 357.872167 1070.59467 0.37275 0.0001334 2.3763 0.00085042 2.7491 0.00098381 357.8728506864696 47.931 0.30355 47.893 47.743 48.047 -0.038647 26 14 3 0 0 0 8.7369 1 25892 25892 6.7232 1.8262 1 3054200 56323 3822 37781 38619 65474 65474 0.0621986784751698 RYLLDHLHL 9 Unmodified _RYLLDHLHL_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8925476074219 3 393.892619 1178.65603 -0.17675 -6.9619E-05 -0.19709 -7.7634E-05 -0.37384 -0.00014725 393.89223732392685 53.359 0.22431 53.295 53.157 53.381 -0.063423 26 10 3 0 0 0 0.044011 1 28942 28942 37.075 22.117 1 3288200 56324 5236 37782 38620 65475 65475 0.0738451587117197 RYLLDHLHL 9 Unmodified _RYLLDHLHL_ 0 0 0 nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 nc|ENSG00000140455|Q9Y6I4-2|USP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 393.892619 1178.65603 0.50846 0.00020028 -0.84443 -0.00033261 -0.33597 -0.00013233 393.8921379266552 53.713 0.11614 53.262 53.205 53.321 -0.45173 -0.01682 -0.00032093 NaN 37.075 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1028700 56325 5236 37782 38620 0.0738451587117197 RYLLELTER 9 Unmodified _RYLLELTER_ 0 0 0 REV__ENSG00000081014|ENST00000261842|AP4E1 REV__ENSG00000081014|ENST00000261842|AP4E1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.0661010742188 3 398.227667 1191.66117 -0.23275 -9.2688E-05 4.2693 0.0017001 4.0365 0.0016075 398.2293891406591 54.109 0.16003 54.042 53.962 54.122 -0.066936 13 7 2 0 0 0 0.21835 1 29416 29416 2.2828 0.80087 1 1427000 + 56326 17678 37783 38621 65476 65476 0.073007749431099 RYLLFARQF 9 Unmodified _RYLLFARQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2331237792969 3 405.232864 1212.67676 0.585 0.00023706 0.41452 0.00016798 0.99953 0.00040504 405.233094151076 57.781 0.31775 57.715 57.554 57.871 -0.066032 43 15 4 0 0 0 0.015688 2 31419 31419;31523 67.838 67.838 1 7503100 56327 1177 37784 38622 65477;65478 65477 0.07893106250821802 RYLLFARQF 9 Unmodified _RYLLFARQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8491821289062 2 607.345658 1212.67676 0.86292 0.00052409 -0.36405 -0.0002211 0.49887 0.00030299 607.345301159923 57.799 0.23891 57.733 57.614 57.852 -0.066036 22 11 3 0 0 0 0.15882 1 31481 31481 29.082 9.8246 1 2250100 56328 1177 37784 38622 65479 65479 0.07893106250821802 RYLLFARQF 9 Unmodified _RYLLFARQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2337646484375 3 405.232864 1212.67676 0.92603 0.00037526 0.4336 0.00017571 1.3596 0.00055097 405.232916286181 91.336 0.39198 85.16 84.939 85.331 -6.1757 57 21 3 0 0 0 0.01958 2 60400 60271;60400 63.961 54.417 1 23576000 56329 1177 37784 38622 65480;65481 65481 0.07893106250821802 RYLLFARQF 9 Unmodified _RYLLFARQF_ 0 0 0 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 ENSG00000076003|ENST00000264156|MCM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3463745117188 2 607.345658 1212.67676 0.51046 0.00031003 0.53295 0.00032369 1.0434 0.00063371 607.3459937611481 91.315 0.35561 85.139 84.975 85.331 -6.1757 34 19 2 0 0 0 0.0087923 2 60416 60294;60416 115.69 95.277 1 12363000 56330 1177 37784 38622 65482;65483 65483 0.07893106250821802 RYLLHQLQL 9 Unmodified _RYLLHQLQL_ 0 0 0 ENSG00000065457|ENST00000564657|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 ENSG00000065457|ENST00000564657|ADAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2366027832031 3 395.236385 1182.68733 -0.1071 -4.2329E-05 0.42504 0.00016799 0.31795 0.00012566 395.2366030745486 51.665 0.25772 51.606 51.494 51.751 -0.058918 26 12 3 0 0 0 0.27545 1 27977 27977 18.373 9.3968 1 2341200 56331 904 37785 38623 65484 65484 0.10329088905268691 RYLLKFEQI 9 Unmodified _RYLLKFEQI_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3526611328125 2 605.353148 1208.69174 -0.094599 -5.7266E-05 0.97801 0.00059204 0.88341 0.00053478 605.3536728348168 54.112 0.26077 54.045 53.901 54.162 -0.066936 31 12 3 0 0 0 0.015445 1 29348 29348 68.081 5.508 1 7868400 56332 681 37786 38624 65485 65485 0.09574553328161528 RYLLKFEQI 9 Unmodified _RYLLKFEQI_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3530883789062 2 605.353148 1208.69174 0.68211 0.00041292 -0.078058 -4.7253E-05 0.60405 0.00036567 605.353390928188 87.722 0.45569 81.547 81.237 81.693 -6.1757 39 24 2 0 0 0 0.0087873 2 57844 57722;57844 103.35 33.022 1 9879200 56333 681 37786 38624 65486;65487 65487 0.09574553328161528 RYLLKFEQI 9 Unmodified _RYLLKFEQI_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.9052429199219 3 403.904524 1208.69174 1.218 0.00049196 0.27077 0.00010937 1.4888 0.00060132 403.9044221359769 87.645 0.45569 81.469 81.237 81.693 -6.1757 41 24 2 0 0 0 0.039985 2 57781 57781;57929 38.615 15.84 1 13919000 56334 681 37786 38624 65488;65489 65488 0.09574553328161528 RYLLQHQFI 9 Unmodified _RYLLQHQFI_ 0 0 0 nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785 nc|ENSG00000197162|A8K8V0-2|ZNF785 nc|ENSG00000197162|A8K8V0-2|ZNF785 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5651245117188 3 406.564502 1216.67168 0.080025 3.2535E-05 2.8842 0.0011726 2.9642 0.0012051 406.56623721978855 48.57 0.37661 48.526 48.395 48.772 -0.04369 28 18 2 0 0 0 0.031062 1 26201 26201 41.956 21.541 1 4290300 56335 9919 37787 38625 65490 65490 0.07200802388229022 RYLLTQELL 9 Unmodified _RYLLTQELL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.837646484375 2 574.837331 1147.66011 0.5214 0.00029972 0.30474 0.00017518 0.82614 0.0004749 574.8376806036132 68.467 0.23152 68.467 68.312 68.543 0 16 10 2 0 0 0 0.331 1 38138 38138 21.537 4.4241 1 575130 56336 2128 37788 38626 65491 65491 0.09218560574208823 RYLLTQELL 9 Unmodified _RYLLTQELL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8372192382812 2 574.837331 1147.66011 0.42003 0.00024145 0.062378 3.5857E-05 0.48241 0.00027731 574.8372466779997 68.821 0.43568 68.34 68.118 68.554 -0.48071 61 19 5 0 0 0 0.12357 2 37551 37551;37659 32.786 5.1569 1 29311000 56337 2128 37788 38626 65492;65493 65492 0.09218560574208823 RYLLTQELL 9 Unmodified _RYLLTQELL_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8379516601562 2 574.837331 1147.66011 0.59629 0.00034277 0.85093 0.00048915 1.4472 0.00083191 574.8377655973325 68.309 0.293 68.334 68.206 68.499 0.025154 36 14 3 0 0 0 0.053952 1 37491 37491 39.95 5.548 1 10605000 56338 2128 37788 38626 65494 65494 0.09218560574208823 RYLLYLQIK 9 Unmodified _RYLLYLQIK_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9186401367188 3 403.916653 1208.72813 -0.35473 -0.00014328 2.3791 0.00096096 2.0244 0.00081768 403.91782890226125 35.998 0.54877 36.023 35.723 36.272 0.024967 38 25 3 0 0 0 0.58145 1 19070 19070 2.4985 1.427 1 5563600 56339 8186 37789 38627 65495 65495 0.13211430224873766 RYLLYLQIK 9 Unmodified _RYLLYLQIK_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 403.916653 1208.72813 0.081321 3.2847E-05 1.5338 0.00061953 1.6151 0.00065237 403.9171167899483 35.994 0.13891 35.994 35.914 36.053 0 -0.014206 -0.00050079 NaN 2.4985 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3019100 56340 8186 37789 38627 0.13211430224873766 RYLMDPDTF 9 Oxidation (M) _RYLM(Oxidation (M))DPDTF_ RYLM(1)DPDTF RYLM(86)DPDTF 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2656860351562 2 587.265881 1172.51721 -0.020314 -1.193E-05 -0.31691 -0.00018611 -0.33723 -0.00019804 587.2659770205747 42.065 0.41747 42.065 41.881 42.299 0 65 21 4 0 0 0 0.0090524 2 22702 22702;22815 85.642 58.013 1 23874000 56341 8856 37790 38628 65496;65497 65496 1493 -0.06214814879331243 RYLMDPDTF 9 Unmodified _RYLMDPDTF_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.7969360351562 2 579.268424 1156.5223 0.97849 0.00056681 0.646 0.00037421 1.6245 0.00094102 579.2690504464832 63.058 0.51152 56.883 56.544 57.056 -6.1757 54 26 3 0 0 0 0.16895 1 40683 40683 24.021 10.115 1 27968000 56342 8856 37790 38629 65498 65498 -0.04970511016699675 RYLMDPDTFTF 11 Oxidation (M) _RYLM(Oxidation (M))DPDTFTF_ RYLM(1)DPDTFTF RYLM(55)DPDTFTF 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 711.324951171875 2 711.323928 1420.6333 0.53774 0.00038251 0.79289 0.000564 1.3306 0.00094651 711.3244908799398 64.372 0.40588 63.887 63.675 64.081 -0.48512 64 18 4 0 0 0 0.029988 1 35162 35162 55.235 39.086 1 6278700 56343 8856 37791 38630 65499 65499 1493 -0.06018916099310445 RYLMDPDTFTF 11 Oxidation (M) _RYLM(Oxidation (M))DPDTFTF_ RYLM(1)DPDTFTF RYLM(51)DPDTFTF 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 711.3244018554688 2 711.323928 1420.6333 0.44314 0.00031521 0.52981 0.00037687 0.97295 0.00069208 711.3241557620898 78.815 0.64847 72.639 72.484 73.132 -6.1757 43 36 2 0 0 0 0.047268 1 51609 51609 51.488 35.339 1 9600400 56344 8856 37791 38630 65500 65500 1493 -0.06018916099310445 RYLMDPDTFTF 11 Oxidation (M) _RYLM(Oxidation (M))DPDTFTF_ RYLM(1)DPDTFTF RYLM(50)DPDTFTF 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MSMS AL20221201_MKP_PDAC_01 4 711.323974609375 2 711.323928 1420.6333 NaN NaN NaN NaN NaN NaN NaN 78.617 1 72.441 71.941 72.941 -6.1757 0 0 0 0.10726 1 51473 51473 49.527 29.113 1 56345 8856 37791 38630 65501 65501 1493 -0.06018916099310445 RYLMDPDTFTF 11 Oxidation (M) _RYLM(Oxidation (M))DPDTFTF_ 0 0 1 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 711.323928 1420.6333 1.1053 0.00078625 0.16308 0.000116 1.2684 0.00090225 711.3240765487513 63.898 0.27749 63.887 63.719 63.996 -0.010532 0.033978 -0.00045164 NaN 55.235 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3793300 56346 8856 37791 38630 1493 -0.06018916099310445 RYLMDPDTFTF 11 Unmodified _RYLMDPDTFTF_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 703.826416015625 2 703.32647 1404.63839 -0.81895 -0.00057599 -1.2279 -0.00086358 -2.0468 -0.0014396 703.826564875862 78.054 0.17914 77.572 77.505 77.684 -0.4826 12 10 2 0 0 0 0.46197 1 42748 42748 22.658 14.503 1 1987500 56347 8856 37791 38631 65502 65502 -0.04774612236678877 RYLMDPDTFTF 11 Unmodified _RYLMDPDTFTF_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 703.3256225585938 2 703.32647 1404.63839 0.80603 0.0005669 -0.11671 -8.2086E-05 0.68932 0.00048482 703.3264736026005 96.129 0.36974 89.953 89.767 90.136 -6.1757 68 22 4 0 0 0 2.3774E-06 2 63620 63620;63750 100.71 74.441 1 94024000 56348 8856 37791 38631 65503;65504 65503 -0.04774612236678877 RYLMENTFF 9 Unmodified _RYLMENTFF_ 0 0 0 ENSG00000141524|ENST00000590602|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6 ENSG00000141524|ENST00000590602|TMC6 ENSG00000141524|ENST00000590602|TMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7919311523438 2 610.792066 1219.56958 0.87738 0.0005359 -0.16327 -9.9721E-05 0.71412 0.00043618 610.7910320317186 91.426 0.32143 85.25 85.188 85.509 -6.1757 19 17 2 0 0 0 0.07087 1 60492 60492 39.95 21.803 1 5258300 56349 5344 37792 38632 65505 65505 -0.03142231745709978 RYLNDFYEL 9 Unmodified _RYLNDFYEL_ 0 0 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8019409179688 2 616.800946 1231.58734 0.78393 0.00048353 -0.63226 -0.00038998 0.15167 9.3553E-05 616.8005682389297 64.404 0.19228 63.919 63.779 63.971 -0.48512 12 8 2 0 0 0 0.4887 1 35144 35144 8.1555 1.9497 1 1066200 56350 2821 37793 38633 65506 65506 -0.019191932191688466 RYLNDLYIL 9 Unmodified _RYLNDLYIL_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8303833007812 2 591.829506 1181.64446 1.12 0.00066282 -0.92858 -0.00054956 0.19137 0.00011326 591.8292906551522 96.421 0.26431 90.246 90.122 90.387 -6.1757 24 15 2 0 0 0 0.06294 1 63852 63852 41.84 5.7126 1 20334000 56351 8230 37794 38634 65507 65507 0.06090274057191891 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.8012084960938 2 606.798403 1211.58225 -0.066872 -4.0578E-05 -0.58147 -0.00035284 -0.64834 -0.00039341 606.7979907500202 56.739 0.56889 56.739 56.474 57.043 0 104 24 6 0 0 0 0.0088668 2 31482 31482;31584 107.19 54.919 1 678420000 56352 1432 37795 38635 65508;65509 65508 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7991943359375 2 606.798403 1211.58225 0.43412 0.00026343 4.3227 0.002623 4.7569 0.0028865 606.8007835398561 57.221 0.51741 56.731 56.426 56.943 -0.48974 76 23 4 0 0 0 0.013118 1 31090 31090 88.954 35.121 1 21863000 56353 1432 37795 38635 65510 65510 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8007202148438 2 606.798403 1211.58225 0.70466 0.00042758 0.32734 0.00019863 1.032 0.00062622 606.7985569484104 56.906 0.27681 56.837 56.678 56.955 -0.068737 36 13 4 0 0 0 0.067618 1 30925 30925 51.63 19.324 1 8419900 56354 1432 37795 38635 65511 65511 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.798583984375 2 606.798403 1211.58225 0.54973 0.00033357 0.84495 0.00051271 1.3947 0.00084628 606.7988442030864 63.291 0.98354 57.115 56.896 57.88 -6.1757 193 55 4 0 0 0 0.013118 4 40902 40776;40902;41043;41386 88.954 50.98 1 289540000 56355 1432 37795 38635 65512;65513;65514;65515 65513 -0.015074970817977373 RYLNEFEEL 9 Unmodified _RYLNEFEEL_ 0 0 0 ENSG00000086232|ENST00000199389|EIF2AK1;nc|ENSG00000086232|Q9BQI3-2|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 ENSG00000086232|ENST00000199389|EIF2AK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8005981445312 2 606.798403 1211.58225 0.78642 0.0004772 0.8083 0.00049048 1.5947 0.00096768 606.7987192597908 71.509 1.9606 65.333 64.39 66.351 -6.1757 253 102 3 0 0 0 0.013118 8 47294 46268;46502;46622;46742;46877;47015;47161;47294 85.642 45.7 1 140360000 56356 1432 37795 38635 65516;65517;65518;65519;65520;65521;65522;65523 65523 -0.015074970817977373 RYLNELKWSF 10 Unmodified _RYLNELKWSF_ 0 0 0 ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11 ENST00000475818.5_1_3:13522761-13543460:+|nuORF ENST00000475818.5_1_3:13522761-13543460:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.5758666992188 3 452.575067 1354.70337 1.3727 0.00062123 -0.080343 -3.6361E-05 1.2923 0.00058487 452.5748432902704 63.951 0.39077 63.94 63.803 64.194 -0.010532 49 19 4 0 0 0 0.010233 1 34970 34970 76.416 59.578 1 14774000 56357 7009 37796 38636 65524 65524 0.04020750351492097 RYLNELKWSF 10 Unmodified _RYLNELKWSF_ 0 0 0 ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11 ENST00000475818.5_1_3:13522761-13543460:+|nuORF ENST00000475818.5_1_3:13522761-13543460:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.5736389160156 3 452.575067 1354.70337 0.32776 0.00014834 0.25805 0.00011679 0.58581 0.00026512 452.575031462136 93.391 0.25069 87.215 87.084 87.334 -6.1757 31 18 2 0 0 0 0.010233 1 61757 61757 68.484 44.255 1 43634000 56358 7009 37796 38636 65525 65525 0.04020750351492097 RYLNELKWSF 10 Unmodified _RYLNELKWSF_ 0 0 0 ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11 ENST00000475818.5_1_3:13522761-13543460:+|nuORF ENST00000475818.5_1_3:13522761-13543460:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.8599243164062 2 678.358962 1354.70337 0.33432 0.00022679 -1.3925 -0.00094464 -1.0582 -0.00071786 678.3582681806599 93.369 0.20396 87.193 87.114 87.318 -6.1757 25 15 2 0 0 0 0.0042881 2 61816 61778;61816 100.71 47.305 1 25599000 56359 7009 37796 38636 65526;65527 65527 0.04020750351492097 RYLNKAFHI 9 Unmodified _RYLNKAFHI_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8894348144531 3 387.889097 1160.64546 0.032125 1.2461E-05 0.85333 0.000331 0.88545 0.00034346 387.8894429343866 33.776 0.3208 33.805 33.672 33.993 0.028934 48 13 5 0 0 0 0.0088975 1 17757 17757 92.653 69.995 1 35645000 56360 6122 37797 38637 65528 65528 0.0715653321674381 RYLNKAFHI 9 Unmodified _RYLNKAFHI_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8889770507812 3 387.889097 1160.64546 0.98568 0.00038234 -0.28538 -0.0001107 0.7003 0.00027164 387.88912695627306 38.326 0.28032 33.957 33.87 34.15 -4.3689 31 17 2 0 0 0 0.0048787 1 22592 22592 92.653 68.864 1 24997000 56361 6122 37797 38637 65529 65529 0.0715653321674381 RYLNKAFHIW 10 Unmodified _RYLNKAFHIW_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.25 3 449.915535 1346.72478 0.96279 0.00043318 -0.62475 -0.00028108 0.33805 0.00015209 449.915368143296 47.632 0.34953 47.594 47.455 47.805 -0.038647 32 16 3 0 0 0 0.024351 1 25647 25647 71.708 63.264 1 10299000 56362 6122 37798 38638 65530 65530 0.0652818017088066 RYLNKAFHIW 10 Unmodified _RYLNKAFHIW_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.9154357910156 3 449.915535 1346.72478 1.1954 0.00053783 -0.37081 -0.00016683 0.82458 0.00037099 449.91543316541055 94.701 0.68569 88.526 88.186 88.872 -6.1757 61 39 2 0 0 0 0.0069983 2 62687 62569;62687 93.166 83.015 1 12218000 56363 6122 37798 38638 65531;65532 65532 0.0652818017088066 RYLNKSFVL 9 Unmodified _RYLNKSFVL_ 0 0 0 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3321533203125 2 570.332216 1138.64988 0.12383 7.0622E-05 0.29235 0.00016674 0.41618 0.00023736 570.3323976182674 45.509 0.18408 45.481 45.381 45.565 -0.028011 14 9 2 0 0 0 0.037253 2 24451 24451;24493 56.177 39.064 1 7801700 56364 4428 37799 38639 65533;65534 65533 0.08609997639655376 RYLNRQSLD 9 Unmodified _RYLNRQSLD_ 0 0 0 REV__ENSG00000245680|ENST00000532828|ZNF585B REV__ENSG00000245680|ENST00000532828|ZNF585B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8766784667969 3 388.875516 1163.60472 NaN NaN NaN NaN NaN NaN NaN 39.705 1 39.408 38.908 39.908 -0.29716 0 0 0 0.50124 1 20956 20956 10.8 0 1 + 56365 24486 37800 38640 65535 65535 0.029461471064678335 RYLNSQQQYF 10 Unmodified _RYLNSQQQYF_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.8289794921875 2 673.828026 1345.6415 -0.077086 -5.1943E-05 0.33626 0.00022658 0.25917 0.00017464 673.828305577548 41.409 0.22782 41.106 40.964 41.192 -0.30304 33 10 4 0 0 0 0.06987 1 21899 21899 53.404 36.291 1 12549000 56366 7970 37801 38641 65536 65536 -0.01749601067626827 RYLNSQQQYF 10 Unmodified _RYLNSQQQYF_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.8279418945312 2 673.828026 1345.6415 0.39694 0.00026747 0.22472 0.00015142 0.62165 0.00041889 673.8280693075981 41.071 0.26934 41.069 40.931 41.2 -0.0017929 36 12 4 0 0 0 0.043225 1 21907 21907 61.602 38.866 1 6838600 56367 7970 37801 38641 65537 65537 -0.01749601067626827 RYLNSQQQYF 10 Unmodified _RYLNSQQQYF_ 0 0 0 nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB nc|ENSG00000170322|Q6P4R8-3|NFRKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.82861328125 2 673.828026 1345.6415 0.29233 0.00019698 0.20448 0.00013778 0.49681 0.00033476 673.8282967873353 46.479 0.2962 41.399 41.201 41.497 -5.0805 73 30 3 0 0 0 0.015688 2 28603 28603;28745 79.596 56.86 1 100920000 56368 7970 37801 38641 65538;65539 65538 -0.01749601067626827 RYLPAGAA 8 Unmodified _RYLPAGAA_ 0 0 0 REV__ENST00000256951.9_1_12:13368961-13369009:+|nuORF REV__ENST00000256951.9_1_12:13368961-13369009:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4529418945312 1 818.451914 817.444637 -0.19159 -0.00015681 0.54972 0.00044992 0.35813 0.00029311 818.4524814175303 45.393 0.20605 45.393 45.306 45.512 0 19 11 2 0 0 0 0.67481 1 24727 24727 19.439 2.4967 1 17389000 + 56369 24924 37802 38642 65540 65540 0.028612639000698437 RYLPAGAA 8 Unmodified _RYLPAGAA_ 0 0 0 REV__ENST00000256951.9_1_12:13368961-13369009:+|nuORF REV__ENST00000256951.9_1_12:13368961-13369009:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 819.4539184570312 1 818.451914 817.444637 1.1573 0.00094717 -0.34424 -0.00028175 0.81302 0.00066542 818.4518593989193 51.226 0.42413 45.577 45.38 45.804 -5.649 39 25 2 0 0 0 0.72953 1 32132 32132 14.582 0 1 40833000 + 56370 24924 37802 38642 65541 65541 0.028612639000698437 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.3265380859375 2 552.326599 1102.63865 0.60803 0.00033583 -0.1742 -9.6213E-05 0.43383 0.00023962 552.3264118435613 74.74 0.37948 74.74 74.56 74.94 0 48 17 4 0 0 0 0.094149 1 41556 41556 34.402 10.381 1 6701900 56371 1629 37803 38643 65542 65542 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3269653320312 2 552.326599 1102.63865 0.32849 0.00018143 0.11402 6.2978E-05 0.44251 0.00024441 552.3265588045095 74.516 0.6169 74.562 74.344 74.961 0.045959 103 27 5 0 0 0 0.018301 3 41008 41008;41114;41213 65.235 12.967 1 351290000 56372 1629 37803 38643 65543;65544;65545 65543 0.09143175545523263 RYLPDTLLL 9 Unmodified _RYLPDTLLL_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT;ENST00000207636.9_1_22:19951681-19956256:+|nuORF ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3278198242188 2 552.326599 1102.63865 1.337 0.00073847 -0.97946 -0.00054098 0.35756 0.00019749 552.3256949132979 96.547 0.55187 90.371 90.104 90.656 -6.1757 131 32 5 0 0 0 0.044011 2 63841 63841;63968 47.749 3.8904 1 3304899999.9999995 56373 1629 37803 38643 65546;65547 65546 0.09143175545523263 RYLPEDFMESL 11 Oxidation (M) _RYLPEDFM(Oxidation (M))ESL_ RYLPEDFM(1)ESL RYLPEDFM(48)ESL 0 0 1 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 708.3289794921875 2 708.32921 1414.64387 -0.039095 -2.7692E-05 -0.48902 -0.00034639 -0.52812 -0.00037408 708.3289626007698 60.228 0.25945 59.737 59.607 59.866 -0.49079 17 12 2 0 0 0 0.06459 1 32791 32791 47.732 32.483 1 4085300 56374 3552 37804 38644 65548 65548 628 -0.046869334448729205 RYLPEDFMESL 11 Oxidation (M) _RYLPEDFM(Oxidation (M))ESL_ 0 0 1 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 708.32921 1414.64387 0.42313 0.00029972 -0.94044 -0.00066614 -0.5173 -0.00036642 708.3282095975086 59.797 0.10229 59.744 59.714 59.816 -0.053062 0.06164 -0.00058906 NaN 47.732 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1193600 56375 3552 37804 38644 628 -0.046869334448729205 RYLPEDFMESL 11 Unmodified _RYLPEDFMESL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 700.3310546875 2 700.331753 1398.64895 0.47812 0.00033485 0.63037 0.00044147 1.1085 0.00077631 700.3322663472394 79.163 0.31662 78.677 78.553 78.87 -0.48596 25 13 2 0 0 0 0.65538 2 43342 43342;43454 8.4443 5.7091 1 1677600 56376 3552 37804 38645 65549;65550 65549 -0.03442629582241352 RYLPEDFMESL 11 Unmodified _RYLPEDFMESL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.33154296875 2 700.331753 1398.64895 0.91621 0.00064165 0.39136 0.00027408 1.3076 0.00091573 700.3318798821557 96.728 0.35198 90.552 90.37 90.722 -6.1757 62 20 4 0 0 0 2.8970999999999996E-28 2 64039 64039;64157 159.1 119.15 1 76757000 56377 3552 37804 38645 65551;65552 65551 -0.03442629582241352 RYLPEDFMESL 11 Unmodified _RYLPEDFMESL_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 700.331753 1398.64895 0.51738 0.00036233 1.7788 0.0012457 2.2962 0.0016081 700.3328120374316 78.626 0.19904 78.678 78.553 78.752 0.052452 0.0035678 0.0012535 NaN 8.4443 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1026800 56378 3552 37804 38645 -0.03442629582241352 RYLPGCQHRLW 11 Carbamidomethyl (C) _RYLPGC(Carbamidomethyl (C))QHRLW_ RYLPGC(1)QHRLW RYLPGC(96)QHRLW 0 1 0 ENST00000359867.7_2_22:38699234-38714066:-|nuORF ENST00000359867.7_2_22:38699234-38714066:-|nuORF ENST00000359867.7_2_22:38699234-38714066:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.9224548339844 3 495.922584 1484.74592 0.13094 6.4938E-05 -0.81171 -0.00040255 -0.68077 -0.00033761 495.92240777647424 35.271 0.18954 35.298 35.186 35.376 0.027401 11 8 2 0 0 0 4.6903E-06 1 18651 18651 96.034 85.719 1 3007400 56379 12150 37805 38646 65553 65553 971 0.022938222080711057 RYLPGCQHRLW 11 Carbamidomethyl (C) _RYLPGC(Carbamidomethyl (C))QHRLW_ RYLPGC(1)QHRLW RYLPGC(79)QHRLW 0 1 0 ENST00000359867.7_2_22:38699234-38714066:-|nuORF ENST00000359867.7_2_22:38699234-38714066:-|nuORF ENST00000359867.7_2_22:38699234-38714066:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.9233703613281 3 495.922584 1484.74592 NaN NaN NaN NaN NaN NaN NaN 78.081 1 71.905 71.405 72.405 -6.1757 0 0 0 0.0015326 1 51095 51095 78.61 68.846 1 56380 12150 37805 38646 65554 65554 971 0.022938222080711057 RYLPHEELF 9 Unmodified _RYLPHEELF_ 0 0 0 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant;ENSG00000124459|ENST00000269973|ZNF45 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8765869140625 3 401.876746 1202.60841 0.34085 0.00013698 0.23426 9.4146E-05 0.57512 0.00023113 401.8767195316494 46.127 0.21587 45.791 45.686 45.901 -0.33664 13 10 2 0 0 0 0.38785 1 24696 24696 12.873 3.3286 1 4658300 56381 3787 37806 38647 65555 65555 0.015208168803155786 RYLPKGFLNQF 11 Unmodified _RYLPKGFLNQF_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.5904846191406 3 461.590828 1381.75066 0.70641 0.00032607 -0.54028 -0.00024939 0.16613 7.6684E-05 461.5904827092015 58.603 0.36828 58.543 58.373 58.741 -0.060719 65 18 4 0 0 0 0.33469 2 31994 31882;31994 24.957 22.326 1 42746000 56382 7871 37807 38648 65556;65557 65557 0.07505029622507209 RYLPKGFLNQF 11 Unmodified _RYLPKGFLNQF_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.8829956054688 2 691.882604 1381.75066 0.70835 0.00049009 0.33907 0.0002346 1.0474 0.00072469 691.8828113119981 58.587 0.26582 58.526 58.414 58.679 -0.060722 36 13 3 0 0 0 0.0017085 1 31900 31900 89.401 74.152 1 11603000 56383 7871 37807 38648 65558 65558 0.07505029622507209 RYLPKGFLNQF 11 Unmodified _RYLPKGFLNQF_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.591064453125 3 461.590828 1381.75066 1.1943 0.0005513 -0.12333 -5.6929E-05 1.071 0.00049437 461.5907237269274 91.852 0.41627 85.676 85.49 85.906 -6.1757 75 23 4 0 0 0 0.12206 2 60663 60663;60786 39.923 25.705 1 153960000 56384 7871 37807 38648 65559;65560 65559 0.07505029622507209 RYLPKGFLNQF 11 Unmodified _RYLPKGFLNQF_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 691.8831176757812 2 691.882604 1381.75066 0.79636 0.00055099 -0.045859 -3.1729E-05 0.7505 0.00051926 691.882396927172 91.856 0.39069 85.68 85.53 85.921 -6.1757 61 22 4 0 0 0 5.8765E-11 2 60789 60672;60789 149.91 131.77 1 86456000 56385 7871 37807 38648 65561;65562 65562 0.07505029622507209 RYLPKLKAF 9 Unmodified _RYLPKLKAF_ 0 0 0 nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2373962402344 3 379.237726 1134.69135 0.043879 1.6641E-05 0.45342 0.00017195 0.4973 0.00018859 379.2376415903326 38.144 0.34246 38.161 38.071 38.413 0.01704 20 15 2 0 0 0 0.44883 1 20299 20299 10.151 7.4154 1 1696500 56386 3592 37808 38649 65563 65563 0.12939178398960394 RYLPKLKAF 9 Unmodified _RYLPKLKAF_ 0 0 0 nc|ENSG00000121671|Q49AN0-2|CRY2;ENSG00000121671|ENST00000616080|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 nc|ENSG00000121671|Q49AN0-2|CRY2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2388916015625 3 379.237726 1134.69135 0.57511 0.0002181 0.37072 0.00014059 0.94583 0.00035869 379.2379664133436 84.981 0.3913 78.805 78.6 78.992 -6.1757 28 22 2 0 0 0 0.062454 1 56065 56065 41.956 29.781 1 13572000 56387 3592 37808 38649 65564 65564 0.12939178398960394 RYLPRLHLV 9 Unmodified _RYLPRLHLV_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.911376953125 3 389.576742 1165.7084 0.47278 0.00018419 -0.061879 -2.4107E-05 0.41091 0.00016008 389.57675289112797 42.743 0.27195 42.734 42.599 42.871 -0.0088196 33 12 4 0 0 0 0.029718 1 22868 22868 55.503 36.141 1 34114000 56388 8400 37809 38650 65565 65565 0.13217099004759802 RYLPRLHLV 9 Unmodified _RYLPRLHLV_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5774230957031 3 389.576742 1165.7084 1.3813 0.00053812 0.22862 8.9063E-05 1.6099 0.00062718 389.57677188853535 91.664 0.57337 85.489 85.233 85.806 -6.1757 46 31 2 0 0 0 0.091924 2 60664 60517;60664 34.932 26.488 1 8819600 56389 8400 37809 38650 65566;65567 65567 0.13217099004759802 RYLPRLHLV 9 Unmodified _RYLPRLHLV_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MSMS AL20221201_MKP_PDAC_01 4 389.5771484375 3 389.576742 1165.7084 NaN NaN NaN NaN NaN NaN NaN 93.146 1 86.97 86.47 87.47 -6.1757 0 0 0 0.10661 1 61636 61636 41.956 30.438 1 56390 8400 37809 38650 65568 65568 0.13217099004759802 RYLPSSVFL 9 Unmodified _RYLPSSVFL_ 0 0 0 ENST00000415248.1_1_19:57946919-57954712:+|nuORF ENST00000415248.1_1_19:57946919-57954712:+|nuORF ENST00000415248.1_1_19:57946919-57954712:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3064575195312 2 541.305667 1080.59678 0.78585 0.00042538 0.5656 0.00030616 1.3514 0.00073155 541.3056347258079 66.772 0.57775 66.781 66.398 66.976 0.0095596 56 27 4 0 0 0 0.094149 1 36624 36624 34.402 6.7729 1 24405000 56391 13019 37810 38651 65569 65569 0.059706198569983826 RYLPSSVFL 9 Unmodified _RYLPSSVFL_ 0 0 0 ENST00000415248.1_1_19:57946919-57954712:+|nuORF ENST00000415248.1_1_19:57946919-57954712:+|nuORF ENST00000415248.1_1_19:57946919-57954712:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.3060913085938 2 541.305667 1080.59678 0.77022 0.00041693 -0.081097 -4.3899E-05 0.68912 0.00037303 541.3055356218299 90.323 0.94337 84.147 83.562 84.505 -6.1757 105 54 2 0 0 0 0.094149 4 59513 59376;59513;59649;59782 34.402 12.655 1 26137000 56392 13019 37810 38651 65570;65571;65572;65573 65571 0.059706198569983826 RYLPSTPLRW 10 Unmodified _RYLPSTPLRW_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2428283691406 3 430.24354 1287.70879 0.33464 0.00014398 -0.64097 -0.00027577 -0.30633 -0.0001318 430.2433690216995 54.619 0.26179 54.552 54.443 54.704 -0.066936 25 12 3 0 0 0 0.01074 1 29648 29648 66.683 52.465 1 9787600 56393 3607 37811 38652 65574 65574 0.07644473933964946 RYLPSTPLRW 10 Unmodified _RYLPSTPLRW_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8609619140625 2 644.861672 1287.70879 0.38314 0.00024707 -0.6795 -0.00043818 -0.29636 -0.00019111 644.8613759832614 54.611 0.22062 54.544 54.443 54.663 -0.066936 27 10 3 0 0 0 0.0042881 1 29658 29658 100.71 65.777 1 4909400 56394 3607 37811 38652 65575 65575 0.07644473933964946 RYLPSTPLRW 10 Unmodified _RYLPSTPLRW_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2436828613281 3 430.24354 1287.70879 0.9008 0.00038757 0.30901 0.00013295 1.2098 0.00052052 430.2436913171428 84.064 0.72681 77.888 77.606 78.333 -6.1757 71 39 2 0 0 0 0.018732 2 55243 55243;55367 59.013 40.292 1 15177000 56395 3607 37811 38652 65576;65577 65576 0.07644473933964946 RYLPSTPLRW 10 Unmodified _RYLPSTPLRW_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.8618774414062 2 644.861672 1287.70879 0.58621 0.00037802 0.37451 0.00024151 0.96072 0.00061953 644.8621039961762 84.166 0.78447 77.99 77.645 78.429 -6.1757 75 43 2 0 0 0 0.0096273 3 55392 55260;55392;55527 88.364 59.869 1 17694000 56396 3607 37811 38652 65578;65579;65580 65579 0.07644473933964946 RYLPTEQEVRF 11 Unmodified _RYLPTEQEVRF_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.9212341308594 3 479.921014 1436.74121 0.13959 6.6992E-05 -0.7188 -0.00034497 -0.57921 -0.00027798 480.2549851195182 45.54 0.13126 45.216 45.122 45.253 -0.32425 9 6 2 0 0 0 2.0147E-05 1 24337 24337 78.116 67.05 1 9393100 56397 1803 37812 38653 65581 65581 0.04031216546286487 RYLPTEQEVRF 11 Unmodified _RYLPTEQEVRF_ 0 0 0 ENSG00000100350|ENST00000397224|FOXRED2;ENST00000366463.6_1_22:36886057-36894231:-|nuORF;nc|ENSG00000100350|Q8IWF2-2|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 ENSG00000100350|ENST00000397224|FOXRED2 MSMS AL20221201_MKP_PDAC_01 4 479.9212951660156 3 479.921014 1436.74121 NaN NaN NaN NaN NaN NaN NaN 51.044 1 45.395 44.895 45.895 -5.649 0 0 0 0.034254 1 32091 32091 49.159 30.015 1 56398 1803 37812 38653 65582 65582 0.04031216546286487 RYLQDLLAW 9 Unmodified _RYLQDLLAW_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.32080078125 2 589.321848 1176.62914 0.61025 0.00035963 0.06957 4.0999E-05 0.67982 0.00040063 589.8237279584029 82.289 0.21915 81.794 81.65 81.869 -0.4952 14 8 2 0 0 0 0.21643 1 45042 45042 21.537 6.2885 1 983350 56399 16412 37813 38654 65583 65583 0.04789407259977452 RYLQDLLAW 9 Unmodified _RYLQDLLAW_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3219604492188 2 589.321848 1176.62914 1.5093 0.00088944 0.30523 0.00017988 1.8145 0.0010693 589.3219489130898 81.434 0.59946 81.494 81.26 81.86 0.059929 76 22 5 0 0 0 0.047788 2 44970 44970;45077 45.7 25.285 1 86495000 56400 16412 37813 38654 65584;65585 65584 0.04789407259977452 RYLQDLLAW 9 Unmodified _RYLQDLLAW_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3236694335938 2 589.321848 1176.62914 0.86712 0.00051101 -0.11264 -6.6381E-05 0.75448 0.00044463 589.3216867978585 99.297 0.17308 93.121 93.028 93.201 -6.1757 30 10 4 0 0 0 0.07087 1 66052 66052 39.95 19.535 1 482490000 56401 16412 37813 38654 65586 65586 0.04789407259977452 RYLQKAASM 9 Unmodified _RYLQKAASM_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L;ENST00000554744.1_1_14:81964730-81972475:-|nuORF;nc|ENSG00000071537|Q9UBV2-2|SEL1L ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.287109375 2 534.286951 1066.55935 0.61219 0.00032709 0.30829 0.00016472 0.92049 0.0004918 534.2868597356728 22.342 0.20444 19.607 19.471 19.675 -2.7348 16 10 2 0 0 0 0.08691 1 11996 11996 36.127 21.289 1 2453000 56402 1056 37814 38655 65587 65587 0.028732053197245477 RYLQLYLLAI 10 Unmodified _RYLQLYLLAI_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5926513671875 3 422.592058 1264.75434 0.17312 7.316E-05 1.6701 0.00070578 1.8432 0.00077894 422.592749454786 45.777 0.24396 45.749 45.661 45.905 -0.028011 14 11 2 0 0 0 0.67046 1 24688 24688 6.1918 1.4759 1 1804200 + 56403 19852 37815 38656 65588 65588 0.13255699396381715 RYLQLYLLAI 10 Unmodified _RYLQLYLLAI_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5926513671875 3 422.592058 1264.75434 0.6517 0.0002754 2.0716 0.00087543 2.7233 0.0011508 422.59285585922646 46.219 0.42768 46.185 45.839 46.267 -0.033417 22 19 2 0 0 0 0.23767 1 24688 24688 6.1918 1.4759 1 2010100 + 56404 19852 37815 38656 65589 65589 0.13255699396381715 RYLQLYLLAI 10 Unmodified _RYLQLYLLAI_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 422.592058 1264.75434 0.039204 1.6567E-05 1.9064 0.00080565 1.9457 0.00082222 422.5928221633736 45.607 0.24057 45.607 45.547 45.787 0 -0.07116 0.00014741 NaN 6.1918 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2813600 + 56405 19852 37815 38656 0.13255699396381715 RYLQLYLLAI 10 Unmodified _RYLQLYLLAI_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 422.592058 1264.75434 0.47378 0.00020021 1.715 0.00072476 2.1888 0.00092497 422.9270744544084 45.937 0.20774 45.937 45.86 46.068 0 -0.12428 -0.00022939 NaN 6.1918 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1465200 + 56406 19852 37815 38656 0.13255699396381715 RYLQLYLLAI 10 Unmodified _RYLQLYLLAI_ 0 0 0 REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF REV__ENST00000452107.6_1_7:55447520-55499010:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 422.592058 1264.75434 0.17312 7.316E-05 1.6701 0.00070578 1.8432 0.00077894 422.592749454786 45.777 0.24396 45.749 45.661 45.905 -0.028011 0.07116 -0.00015219 NaN 6.1918 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1804200 + 56407 19852 37815 38656 0.13255699396381715 RYLQQAAP 8 Unmodified _RYLQQAAP_ 0 0 0 REV__JAGN1|p.S143Ffs*41|1|0.28|ENSG00000171135|chr3:9893245-9893246|-/G|frameshift_variant REV__JAGN1|p.S143Ffs*41|1|0.28|ENSG00000171135|chr3:9893245-9893246|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7588806152344 2 473.758884 945.503215 NaN NaN NaN NaN NaN NaN NaN 20.254 1 20.282 19.782 20.782 0.028357 0 0 0 0.94494 1 10246 10246 11.64 3.7301 1 + 56408 22536 37816 38657 65590 65590 0.028283204745548574 RYLQQALDW 9 Unmodified _RYLQQALDW_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8064575195312 2 596.809105 1191.60366 0.48521 0.00028958 -0.5119 -0.00030551 -0.026692 -1.593E-05 596.8083527989234 58.495 0.21236 58.434 58.313 58.526 -0.060719 17 10 3 0 0 0 0.024882 1 31867 31867 58.679 22.552 1 1569800 56409 8634 37817 38658 65591 65591 0.015519327375386638 RYLQQALDW 9 Unmodified _RYLQQALDW_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.31201171875 2 596.809105 1191.60366 0.26285 0.00015687 3.0974 0.0018486 3.3602 0.0020054 596.8110756216282 78.833 0.43605 72.658 72.531 72.967 -6.1757 38 24 2 0 0 0 0.06294 1 51662 51662 41.84 12.758 1 10282000 56410 8634 37817 38658 65592 65592 0.015519327375386638 RYLQQALDW 9 Unmodified _RYLQQALDW_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MSMS AL20221201_MKP_PDAC_01 4 596.8096313476562 2 596.809105 1191.60366 NaN NaN NaN NaN NaN NaN NaN 79.087 1 72.912 72.412 73.412 -6.1757 0 0 0 0.098163 1 51812 51812 43.858 7.7313 1 56411 8634 37817 38658 65593 65593 0.015519327375386638 RYLQSVNEL 9 Unmodified _RYLQSVNEL_ 0 0 0 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 ENSG00000180917|ENST00000434935|CMTR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3007202148438 2 561.301113 1120.58767 -0.19121 -0.00010733 -1.3563 -0.00076129 -1.5475 -0.00086862 561.3006314324224 41.483 0.19432 41.483 41.344 41.538 0 15 9 2 0 0 0 0.047788 1 22365 22365 45.7 13.394 1 11509000 56412 8933 37818 38659 65594 65594 0.03220226500661738 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8214111328125 2 554.821681 1107.62881 0.58694 0.00032565 0.31547 0.00017503 0.90241 0.00050068 554.8219546261352 53.202 0.28422 52.75 52.594 52.878 -0.45173 43 14 4 0 0 0 0.0094097 1 28740 28740 82.529 19.957 1 25888000 56413 5899 37819 38660 65595 65595 0.0792998754011478 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8231201171875 2 554.821681 1107.62881 0.65134 0.00036138 0.077253 4.2862E-05 0.72859 0.00040424 554.8216749089593 52.835 0.39874 52.772 52.603 53.002 -0.063423 72 19 5 0 0 0 0.0044708 2 28586 28586;28682 118.89 37.005 1 121420000 56414 5899 37819 38660 65596;65597 65596 0.0792998754011478 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.822509765625 2 554.821681 1107.62881 0.93912 0.00052104 0.5988 0.00033223 1.5379 0.00085327 554.8220513606911 59.502 0.36909 53.388 53.203 53.572 -6.1147 65 19 4 0 0 0 0.014417 2 38251 38125;38251 69.105 12.928 1 232400000 56415 5899 37819 38660 65598;65599 65599 0.0792998754011478 RYLQTLTTI 9 Unmodified _RYLQTLTTI_ 0 0 0 nc|ENSG00000148175|P27105-2|STOM;ENSG00000148175|ENST00000286713|STOM nc|ENSG00000148175|P27105-2|STOM nc|ENSG00000148175|P27105-2|STOM MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8215942382812 2 554.821681 1107.62881 1.0115 0.00056121 0.30157 0.00016732 1.3131 0.00072852 554.8216583258051 68.807 0.36757 62.631 62.455 62.822 -6.1757 22 19 2 0 0 0 0.014417 1 44915 44915 69.105 21.356 1 10932000 56416 5899 37819 38660 65600 65600 0.0792998754011478 RYLQTYGEW 9 Unmodified _RYLQTYGEW_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000603658.1_1_10:122663582-122664949:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8671264648438 3 405.864617 1214.57202 NaN NaN NaN NaN NaN NaN NaN 81.479 1 81.538 81.038 82.038 0.059929 0 0 0 0.82283 1 45056 45056 4.897 2.3985 1 56417 3488 37820 38661 65601 65601 -0.0266806001641271 RYLQTYGEW 9 Unmodified _RYLQTYGEW_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000603658.1_1_10:122663582-122664949:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.2935180664062 2 608.293288 1214.57202 0.73447 0.00044677 -1.2957 -0.00078814 -0.56118 -0.00034136 608.2929312114294 55.661 0.2744 49.74 49.587 49.861 -5.9211 25 15 2 0 0 0 0.047194 1 35406 35406 57.722 27.085 1 12602000 56418 3488 37820 38661 65602 65602 -0.0266806001641271 RYLQTYGEW 9 Unmodified _RYLQTYGEW_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF;ENST00000603658.1_1_10:122663582-122664949:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 608.293288 1214.57202 0.83872 0.00051019 -1.5508 -0.00094336 -0.71212 -0.00043318 608.2917883549026 49.999 0.20087 49.607 49.51 49.711 -0.3923 -0.066648 -0.00023146 NaN 57.722 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1420300 56419 3488 37820 38661 -0.0266806001641271 RYLRELPLL 9 Unmodified _RYLRELPLL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5759887695312 3 391.576519 1171.70773 0.1992 7.8001E-05 0.16182 6.3367E-05 0.36102 0.00014137 391.576633451886 60.147 0.3009 60.094 59.938 60.239 -0.053062 28 16 3 0 0 0 0.40615 2 32759 32759;32865 12.175 2.4105 1 5804900 56420 3468 37821 38662 65603;65604 65603 0.1287425956509196 RYLRELPLL 9 Unmodified _RYLRELPLL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5769653320312 3 391.576519 1171.70773 1.3515 0.00052922 -0.015341 -6.0071E-06 1.3362 0.00052321 391.576401462075 94.666 0.35983 88.49 88.351 88.711 -6.1757 28 20 2 0 0 0 0.12357 1 62698 62698 30.703 8.0454 1 10745000 56421 3468 37821 38662 65605 65605 0.1287425956509196 RYLRELPLL 9 Unmodified _RYLRELPLL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8632202148438 2 586.861141 1171.70773 1.0065 0.0005907 -0.031482 -1.8476E-05 0.97506 0.00057222 586.8612942584076 94.677 0.30952 88.502 88.351 88.66 -6.1757 24 17 2 0 0 0 0.040337 1 62712 62712 61.602 17.744 1 11665000 56422 3468 37821 38662 65606 65606 0.1287425956509196 RYLRELPLLF 10 Unmodified _RYLRELPLLF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5994262695312 3 440.599324 1318.77614 0.38824 0.00017106 0.22794 0.00010043 0.61618 0.00027149 440.59937404681415 76.977 0.44779 77.027 76.824 77.272 0.05011 78 18 6 0 0 0 0.14688 2 42522 42415;42522 29.281 7.4817 1 42645000 56423 3468 37822 38663 65607;65608 65608 0.12950504144941988 RYLRELPLLF 10 Unmodified _RYLRELPLLF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3952026367188 2 660.395348 1318.77614 0.45284 0.00029905 -0.14208 -9.3826E-05 0.31076 0.00020523 660.3951095888591 76.988 0.35195 77.038 76.869 77.221 0.050102 40 14 4 0 0 0 0.025861 1 42467 42467 70.332 22.583 1 6042500 56424 3468 37822 38663 65609 65609 0.12950504144941988 RYLRELPLLF 10 Unmodified _RYLRELPLLF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.6000366210938 3 440.599324 1318.77614 0.66175 0.00029157 0.69536 0.00030637 1.3571 0.00059794 440.5995760189879 99.623 0.15937 93.448 93.365 93.525 -6.1757 26 9 4 0 0 0 0.1899 1 66390 66390 24.957 7.0939 1 111730000 56425 3468 37822 38663 65610 65610 0.12950504144941988 RYLRELPLLF 10 Unmodified _RYLRELPLLF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.897216796875 2 660.395348 1318.77614 0.23559 0.00015558 0.47683 0.0003149 0.71242 0.00047048 660.3958912885455 99.625 0.14269 93.45 93.365 93.508 -6.1757 19 8 4 0 0 0 0.0015532 1 66392 66392 110.79 53.071 1 124930000 56426 3468 37822 38663 65611 65611 0.12950504144941988 RYLRRRLV 8 Unmodified _RYLRRRLV_ 0 0 0 ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF ENSG00000162063|ENST00000397066|CCNF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.365966796875 2 566.364716 1130.71488 1.7268 0.00097801 -0.38685 -0.0002191 1.34 0.00075891 566.3641038801452 105.12 0.41135 98.948 98.76 99.171 -6.1757 225 72 6 0 0 0 0.81107 1 70481 70481 0 0 1 18463000000 56427 6830 37823 38664 65612 65612 0.1547503695614978 RYLRTSQDFLF 11 Unmodified _RYLRTSQDFLF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.5892944335938 3 482.589376 1444.7463 0.35013 0.00016897 -0.16992 -8.2E-05 0.18021 8.6968E-05 482.92384343592795 56.598 0.23877 56.529 56.419 56.658 -0.068741 23 11 3 0 0 0 0.65096 1 30777 30777 8.7518 1.6501 1 5505800 56428 6396 37824 38665 65613 65613 0.041715204089314284 RYLRVEHHF 9 Unmodified _RYLRVEHHF_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5597839355469 3 419.559751 1255.65742 NaN NaN NaN NaN NaN NaN NaN 19.397 1 19.42 18.92 19.92 0.023106 0 0 0 0.84543 1 9777 9777 2.086 0 1 56429 1188 37825 38666 65614 65614 0.039821499599156596 RYLSKATTL 9 Unmodified _RYLSKATTL_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8084106445312 2 526.808574 1051.60259 0.17249 9.087E-05 -1.1214 -0.00059078 -0.94894 -0.00049991 526.8080579193629 24.929 0.13559 24.954 24.883 25.019 0.024427 9 5 2 0 0 0 0.023481 1 12878 12878 60.074 29.437 1 10863000 56430 4187 37826 38667 65615 65615 0.07885718368652306 RYLSKATTL 9 Unmodified _RYLSKATTL_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8765258789062 3 351.541475 1051.60259 NaN NaN NaN NaN NaN NaN NaN 24.929 1 24.953 24.453 25.453 0.024429 0 0 0 0.22437 1 12880 12880 21.59 10.791 1 56431 4187 37826 38667 65616 65616 0.07885718368652306 RYLSKATTL 9 Unmodified _RYLSKATTL_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.807861328125 2 526.808574 1051.60259 0.79935 0.0004211 -0.73071 -0.00038494 0.068642 3.6161E-05 526.80814463171 28.772 0.32158 25.624 25.458 25.779 -3.1482 35 15 3 0 0 0 0.0081887 2 16153 16037;16153 93.166 45.417 1 62727000 56432 4187 37826 38667 65617;65618 65618 0.07885718368652306 RYLSKATTL 9 Unmodified _RYLSKATTL_ 0 0 0 nc|ENSG00000130177|Q13042-4|CDC16;nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 nc|ENSG00000130177|Q13042-4|CDC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.542236328125 3 351.541475 1051.60259 1.4736 0.00051802 -0.068993 -2.4254E-05 1.4046 0.00049376 351.54139174192346 28.752 0.28661 25.604 25.458 25.744 -3.1482 29 13 3 0 0 0 0.033587 1 16082 16082 49.742 27.942 1 20005000 56433 4187 37826 38667 65619 65619 0.07885718368652306 RYLSKVLEL 9 Unmodified _RYLSKVLEL_ 0 0 0 nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF nc|nan|Q8WUR7-2|C15orf40 nc|nan|Q8WUR7-2|C15orf40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.2294006347656 3 374.229008 1119.66519 0.81543 0.00030516 -0.10222 -3.8253E-05 0.71321 0.0002669 374.229064443263 49.983 0.28149 49.591 49.451 49.732 -0.3923 36 13 4 0 0 0 0.028475 1 26877 26877 43.982 0 1 9919400 56434 7891 37827 38668 65620 65620 0.11014864436833705 RYLSKVLEL 9 Unmodified _RYLSKVLEL_ 0 0 0 nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF nc|nan|Q8WUR7-2|C15orf40 nc|nan|Q8WUR7-2|C15orf40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8401489257812 2 560.839874 1119.66519 1.3365 0.00074956 -1.0665 -0.00059812 0.27001 0.00015143 560.8392929353377 49.665 0.35482 49.616 49.45 49.805 -0.048824 54 17 4 0 0 0 0.017075 2 26788 26788;26903 66.457 20.757 1 35006000 56435 7891 37827 38668 65621;65622 65621 0.11014864436833705 RYLSKVLEL 9 Unmodified _RYLSKVLEL_ 0 0 0 nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF nc|nan|Q8WUR7-2|C15orf40 nc|nan|Q8WUR7-2|C15orf40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8404541015625 2 560.839874 1119.66519 1.5365 0.00086172 -0.21775 -0.00012212 1.3187 0.0007396 560.8397036029996 90.656 0.50448 84.48 84.219 84.723 -6.1757 91 29 4 0 0 0 0.0090524 2 59887 59762;59887 85.642 9.8807 1 97148000 56436 7891 37827 38668 65623;65624 65624 0.11014864436833705 RYLSKVLEL 9 Unmodified _RYLSKVLEL_ 0 0 0 nc|nan|Q8WUR7-2|C15orf40;ENSG00000169609|ENST00000304177|C15orf40;nc|nan|Q8WUR7-3|C15orf40;ENST00000565725.1_1_15:83677164-83680359:-|nuORF nc|nan|Q8WUR7-2|C15orf40 nc|nan|Q8WUR7-2|C15orf40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2294311523438 3 374.229008 1119.66519 1.8755 0.00070185 -0.27635 -0.00010342 1.5991 0.00059843 374.2288800164492 90.684 0.53453 84.508 84.236 84.771 -6.1757 80 31 3 0 0 0 0.05483 1 59921 59921 34.222 0 1 78011000 56437 7891 37827 38668 65625 65625 0.11014864436833705 RYLSPKYIKMF 11 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ RYLSPKYIKM(1)F RYLSPKYIKM(51)F 0 0 1 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.9367370605469 3 487.935607 1460.78499 0.225 0.00010979 0.25665 0.00012523 0.48165 0.00023502 487.93585038782766 37.923 0.29763 37.94 37.773 38.071 0.01704 41 13 4 0 0 0 0.051143 1 20110 20110 50.648 42.361 1 10703000 56438 6822 37828 38669 65626 65626 1180 0.07303109719055101 RYLSPKYIKMF 11 Oxidation (M) _RYLSPKYIKM(Oxidation (M))F_ RYLSPKYIKM(1)F RYLSPKYIKM(56)F 0 0 1 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.9353942871094 3 487.935607 1460.78499 0.79714 0.00038896 -0.16993 -8.2913E-05 0.62722 0.00030604 488.2698801069682 77.707 0.53507 71.532 71.202 71.737 -6.1757 64 30 3 0 0 0 0.027203 2 50838 50697;50838 55.839 39.438 1 14634000 56439 6822 37828 38669 65627;65628 65628 1180 0.07303109719055101 RYLSRRRVTA 10 Unmodified _RYLSRRRVTA_ 0 0 0 REV__ENST00000508369.5_1_4:89744182-89744293:-|nuORF REV__ENST00000508369.5_1_4:89744182-89744293:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5903015136719 3 426.589822 1276.74764 0.92265 0.00039359 0.81781 0.00034887 1.7405 0.00074246 426.59018681191446 49.632 0.2523 49.583 49.45 49.703 -0.048828 25 12 3 0 0 0 0.65023 1 26779 26779 8.4443 1.4072 1 3434800 + 56440 28114 37829 38670 65629 65629 0.12033199288362084 RYLTAAPHAPA 11 Unmodified _RYLTAAPHAPA_ 0 0 0 REV__ENST00000430767.8_1_17:75210112-75210223:+|nuORF REV__ENST00000430767.8_1_17:75210112-75210223:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8804626464844 3 389.88049 1166.61964 NaN NaN NaN NaN NaN NaN NaN 45.433 1 45.405 44.905 45.905 -0.028011 0 0 0 0.28221 1 24407 24407 32.898 10.123 1 + 56441 26968 37830 38671 65630 65630 0.04299638974453046 RYLTGAWRL 9 Unmodified _RYLTGAWRL_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.322265625 2 568.322183 1134.62981 0.83864 0.00047662 -0.38828 -0.00022067 0.45036 0.00025595 568.3219425159323 50.72 0.313 50.666 50.49 50.803 -0.053871 47 15 4 0 0 0 0.046359 2 27388 27388;27487 42.312 18.292 1 25435000 56442 3532 37831 38672 65631;65632 65631 0.06788246699693445 RYLTGAWRL 9 Unmodified _RYLTGAWRL_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2168273925781 3 379.217214 1134.62981 0.69946 0.00026525 -0.69627 -0.00026404 0.0031876 1.2088E-06 379.21698008856237 50.726 0.27463 50.672 50.51 50.784 -0.053871 34 13 4 0 0 0 0.0083595 1 27401 27401 97.741 75.083 1 7334900 56443 3532 37831 38672 65633 65633 0.06788246699693445 RYLTGAWRL 9 Unmodified _RYLTGAWRL_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5 ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2180480957031 3 379.217214 1134.62981 0.5801 0.00021999 0.52595 0.00019945 1.1061 0.00041944 379.2173622613064 84.886 0.40643 78.71 78.532 78.938 -6.1757 51 23 3 0 0 0 0.016448 2 55803 55803;55939 67.081 42.09 1 35002000 56444 3532 37831 38672 65634;65635 65634 0.06788246699693445 RYLTNAQFVC 10 Unmodified _RYLTNAQFVC_ 0 0 0 REV__ENST00000460138.5_1_6:7883179-7883239:-|nuORF REV__ENST00000460138.5_1_6:7883179-7883239:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.206787109375 3 405.537736 1213.59138 0.11122 4.5104E-05 -1.4745 -0.00059796 -1.3633 -0.00055286 405.5366540346497 39.377 0.54037 39.377 38.99 39.53 0 47 25 3 0 0 0 0.69377 1 21043 21043 1.7423 0.14999 1 2287000 + 56445 27291 37832 38673 65636 65636 -0.006874269971376634 RYLTNQKNS 9 Unmodified _RYLTNQKNS_ 0 0 0 ENST00000485039.1_1_1:37967370-37979088:-|nuORF;nc|ENSG00000163875|Q9HAF1-2|MEAF6;ENSG00000163875|ENST00000296214|MEAF6;nc|ENSG00000163875|Q9HAF1-4|MEAF6;nc|ENSG00000163875|Q9HAF1-3|MEAF6 ENST00000485039.1_1_1:37967370-37979088:-|nuORF ENST00000485039.1_1_1:37967370-37979088:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2985229492188 2 562.296362 1122.57817 0.80222 0.00045109 1.4789 0.00083158 2.2811 0.0012827 562.2983569668337 28.316 0.42746 25.168 24.952 25.38 -3.1482 61 22 3 0 0 0 0.2143 2 15727 15727;15846 21.747 3.6117 1 21043000 56446 7090 37833 38674 65637;65638 65637 0.02178458215144019 RYLTRQDPQ 9 Unmodified _RYLTRQDPQ_ 0 0 0 REV__ENSG00000128000|ENST00000434248|ZNF780B REV__ENSG00000128000|ENST00000434248|ZNF780B MSMS AL20221201_MKP_PDAC_01 4 392.8748474121094 3 392.875516 1175.60472 NaN NaN NaN NaN NaN NaN NaN 42.615 1 37.93 37.43 38.43 -4.6846 0 0 0 0.16996 1 25765 25765 32.037 17.819 1 + 56447 19598 37834 38675 65639 65639 0.0239414710647452 RYLTSGGFFL 10 Unmodified _RYLTSGGFFL_ 0 0 0 nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9 nc|ENSG00000069431|O60706|ABCC9 nc|ENSG00000069431|O60706|ABCC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.8746337890625 3 387.541475 1159.60259 0.037583 1.4565E-05 0.33089 0.00012823 0.36847 0.0001428 387.54172848257747 33.834 0.4113 33.863 33.625 34.036 0.028934 40 12 4 0 0 0 0.69377 1 17762 17762 1.7423 0.26037 1 14121000 56448 1004 37835 38676 65640 65640 0.029177183686670105 RYLTVAAIF 9 Unmodified _RYLTVAAIF_ 0 0 0 ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A ENSG00000137285|ENST00000259818|TUBB2B ENSG00000137285|ENST00000259818|TUBB2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.308837890625 2 527.30821 1052.60187 0.23271 0.00012271 -0.7967 -0.00042011 -0.56399 -0.0002974 527.307863921746 74.771 0.25761 74.817 74.682 74.94 0.045959 27 11 3 0 0 0 0.12357 1 41203 41203 26.268 11.43 1 3796700 56449 4920 37836 38677 65641 65641 0.07766923719600527 RYLTVAAVF 9 Unmodified _RYLTVAAVF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.300537109375 2 520.300384 1038.58622 0.3639 0.00018934 0.72754 0.00037854 1.0914 0.00056788 520.3008093342963 67.337 0.37968 66.855 66.695 67.075 -0.48218 45 16 3 0 0 0 0.10247 2 36753 36753;36855 32.786 13.529 1 9013500 56450 9643;9783 37837 38678 65642;65643 65642 0.06846637202556849 RYLTVAAVF 9 Unmodified _RYLTVAAVF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3009643554688 2 520.300384 1038.58622 0.70232 0.00036542 -0.63647 -0.00033116 0.065848 3.4261E-05 520.2999713223679 66.809 1.5503 66.826 66.611 68.161 0.017853 206 76 7 0 0 0 0.047788 5 36581 36581;36684;36793;37011;37266 45.7 23.953 1 668480000 56451 9643;9783 37837 38678 65644;65645;65646;65647;65648 65644 0.06846637202556849 RYLTVAAVF 9 Unmodified _RYLTVAAVF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;ENSG00000196230|ENST00000327892|TUBB ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.301025390625 2 520.300384 1038.58622 1.261 0.00065611 0.38163 0.00019856 1.6426 0.00085467 520.300075692523 89.415 1.7004 83.239 82.373 84.074 -6.1757 366 95 5 0 0 0 0.07087 6 58687 58687;58819;58942;59066;59191;59437 39.95 18.203 1 567260000 56452 9643;9783 37837 38678 65649;65650;65651;65652;65653;65654 65649 0.06846637202556849 RYLTVATVF 9 Unmodified _RYLTVATVF_ 0 0 0 ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000258947|ENST00000315491|TUBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3060913085938 2 535.305667 1068.59678 0.6243 0.00033419 0.65398 0.00035008 1.2783 0.00068427 535.30592958675 64.827 0.44121 64.827 64.677 65.118 7.6294E-06 64 21 4 0 0 0 0.11784 2 35502 35502;35609 31.268 7.2478 1 61264000 56453 10820;8557 37838 38679 65655;65656 65655 0.06522619856991696 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3094482421875 2 575.311146 1148.60774 0.42622 0.00024521 -0.5842 -0.0003361 -0.15798 -9.0887E-05 575.310554608427 59.784 0.36097 59.293 59.11 59.471 -0.49079 54 17 4 0 0 0 0.010611 2 32476 32476;32586 78.728 26.46 1 50321000 56454 1486 37839 38680 65657;65658 65657 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3115234375 2 575.311146 1148.60774 0.42933 0.000247 -0.54457 -0.0003133 -0.11524 -6.63E-05 575.3108198224808 59.406 0.30497 59.353 59.213 59.518 -0.053062 28 15 2 0 0 0 0.078314 1 32347 32347 38.176 12.776 1 18042000 56455 1486 37839 38680 65659 65659 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3116455078125 2 575.311146 1148.60774 0.46791 0.00026919 -0.33209 -0.00019105 0.13582 7.8141E-05 575.3109570242008 65.69 1.1275 59.514 59.221 60.349 -6.1757 215 65 5 0 0 0 0.0085164 6 43084 42541;42677;42813;42944;43084;43253 99.799 45.025 1 401430000 56456 1486 37839 38680 65660;65661;65662;65663;65664;65665 65664 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3141479492188 2 575.311146 1148.60774 0.83348 0.00047951 0.80757 0.00046461 1.6411 0.00094412 575.3118620178765 68.414 0.81516 62.238 61.89 62.705 -6.1757 85 47 2 0 0 0 0.047788 1 44575 44575 45.7 21.679 1 25870000 56457 1486 37839 38680 65666 65666 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3112182617188 2 575.311146 1148.60774 1.1796 0.00067863 0.16316 9.3869E-05 1.3428 0.0007725 575.3106365805608 71.424 1.4808 65.248 64.478 65.959 -6.1757 165 77 3 0 0 0 0.0044708 8 46345 46220;46345;46463;46588;46713;46835;46970;47109 118.89 40.167 1 95538000 56458 1486 37839 38680 65667;65668;65669;65670;65671;65672;65673;65674 65668 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MSMS AL20221201_MKP_PDAC_01 4 575.3109741210938 2 575.311146 1148.60774 NaN NaN NaN NaN NaN NaN NaN 70.152 1 63.976 63.476 64.476 -6.1757 0 0 0 0.0066921 1 45833 45833 99.799 28.665 1 56459 1486 37839 38680 65675 65675 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MSMS AL20221201_MKP_PDAC_01 4 575.3118286132812 2 575.311146 1148.60774 NaN NaN NaN NaN NaN NaN NaN 70.332 1 64.156 63.656 64.656 -6.1757 0 0 0 0.01231 1 45957 45957 88.954 17.82 1 56460 1486 37839 38680 65676 65676 0.03937977440614304 RYLVEVEEL 9 Unmodified _RYLVEVEEL_ 0 0 0 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 ENSG00000088356|ENST00000202017|PDRG1 MSMS AL20221201_MKP_PDAC_01 4 575.3104248046875 2 575.311146 1148.60774 NaN NaN NaN NaN NaN NaN NaN 70.529 1 64.353 63.853 64.853 -6.1757 0 0 0 0.01231 1 46093 46093 88.954 36.686 1 56461 1486 37839 38680 65677 65677 0.03937977440614304 RYLVHYHGP 9 Unmodified _RYLVHYHGP_ 0 0 0 REV__ENSG00000263201|ENST00000574912|DPEP2NB REV__ENSG00000263201|ENST00000574912|DPEP2NB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.2026977539062 3 381.201564 1140.58286 0.7387 0.00028159 1.3636 0.00051982 2.1023 0.00080142 381.2020120119911 75.126 0.34657 74.649 74.474 74.821 -0.47714 45 15 4 0 0 0 0.49272 1 41073 41073 8.1555 1.0538 1 7753100 + 56462 24597 37840 38681 65678 65678 0.01819387148543683 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8397827148438 2 560.839874 1119.66519 0.41109 0.00023056 0.011882 6.6637E-06 0.42297 0.00023722 560.8398488817966 46.019 0.51758 45.694 45.51 46.027 -0.32425 82 26 6 0 0 0 0.0082548 2 24547 24547;24655 96.367 32.406 1 373900000 56463 3206 37841 38682 65679;65680 65679 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.22900390625 3 374.229008 1119.66519 0.21599 8.0828E-05 -0.11495 -4.3018E-05 0.10103 3.7809E-05 374.22901658463775 46.014 0.24738 45.69 45.565 45.813 -0.32425 31 12 4 0 0 0 0.013041 1 24590 24590 57.249 32.368 1 19303000 56464 3206 37841 38682 65681 65681 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8400268554688 2 560.839874 1119.66519 0.59076 0.00033132 0.059214 3.321E-05 0.64998 0.00036453 560.8398916335116 45.763 0.49922 45.735 45.565 46.064 -0.028011 81 23 5 0 0 0 0.0013034 2 24537 24537;24647 137.42 44.77 1 262620000 56465 3206 37841 38682 65682;65683 65682 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2285766601562 3 374.229008 1119.66519 0.13614 5.0946E-05 0.32767 0.00012262 0.4638 0.00017357 374.2291953838109 45.765 0.28253 45.737 45.601 45.884 -0.028011 33 13 3 0 0 0 0.020973 1 24577 24577 49.527 29.901 1 12820000 56466 3206 37841 38682 65684 65684 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8407592773438 2 560.839874 1119.66519 1.2031 0.00067475 -0.20961 -0.00011756 0.9935 0.0005572 560.8397503127052 51.071 0.5734 45.422 45.134 45.707 -5.649 123 34 5 0 0 0 0.00085914 3 31949 31949;32088;32213 140.63 58.104 1 920920000 56467 3206 37841 38682 65685;65686;65687 65685 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2296142578125 3 374.229008 1119.66519 1.5383 0.00057569 -0.087671 -3.2809E-05 1.4507 0.00054288 374.2289691842125 51.074 0.38743 45.425 45.217 45.605 -5.649 60 23 3 0 0 0 0.009483 2 32145 32017;32145 65.474 34.77 1 113560000 56468 3206 37841 38682 65688;65689 65689 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8394775390625 2 560.839874 1119.66519 0.88109 0.00049415 0.32917 0.00018461 1.2103 0.00067876 560.839826099242 67.4 2.1078 61.224 59.692 61.799 -6.1757 214 120 3 0 0 0 0.05483 1 43869 43869 43.772 5.5968 1 56137000 56469 3206 37841 38682 65690 65690 0.11014864436833705 RYLVISEKL 9 Unmodified _RYLVISEKL_ 0 0 0 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 ENSG00000116212|ENST00000371370|LRRC42 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.839874 1119.66519 0.5881 0.00032983 -1.1906 -0.00066771 -0.60245 -0.00033788 560.8396032684873 45.811 0.27239 45.811 45.685 45.957 0 0.1453 -0.0012212 NaN 140.63 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 15445000 56470 3206 37841 38682 0.11014864436833705 RYLWATVTI 9 Unmodified _RYLWATVTI_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.820068359375 2 561.818941 1121.62333 0.73323 0.00041194 0.68005 0.00038207 1.4133 0.00079401 561.8189569771932 74.473 0.33797 74.519 74.366 74.704 0.045959 44 14 4 0 0 0 0.044042 1 41030 41030 51.63 0 1 6248800 56471 932 37842 38683 65691 65691 0.06738308748322197 RYLWATVTI 9 Unmodified _RYLWATVTI_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8198852539062 2 561.818941 1121.62333 1.5869 0.00089156 0.024687 1.387E-05 1.6116 0.00090543 561.8191695965537 95.793 0.21578 89.618 89.481 89.696 -6.1757 31 13 3 0 0 0 0.060956 1 63457 63457 45.7 0 1 37960000 56472 932 37842 38683 65692 65692 0.06738308748322197 RYLYKWIAYY 10 Unmodified _RYLYKWIAYY_ 0 0 0 REV__ENSG00000108960|ENST00000262065|MMD REV__ENSG00000108960|ENST00000262065|MMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 719.8782958984375 2 719.87953 1437.74451 NaN NaN NaN NaN NaN NaN NaN 45.566 1 45.242 44.742 45.742 -0.32425 0 0 0 0.83398 1 24348 24348 10.824 1.4408 1 + 56473 18639 37843 38684 65693 65693 0.04314511390998632 RYLYSASML 9 Oxidation (M) _RYLYSASM(Oxidation (M))L_ RYLYSASM(1)L RYLYSASM(52)L 0 0 1 ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1 ENST00000518683.5_1_8:87410815-87460532:+|nuORF ENST00000518683.5_1_8:87410815-87460532:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.279052734375 2 560.278792 1118.54303 0.38124 0.0002136 -0.090612 -5.0768E-05 0.29063 0.00016283 560.2791572474068 43.262 0.11692 42.952 42.908 43.025 -0.31039 7 5 2 0 0 0 0.036857 1 23033 23033 51.63 20.361 1 6212400 56474 3681 37844 38685 65694 65694 645 -0.011499206370217507 RYLYSASML 9 Oxidation (M) _RYLYSASM(Oxidation (M))L_ RYLYSASM(1)L RYLYSASM(52)L 0 0 1 ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1 ENST00000518683.5_1_8:87410815-87460532:+|nuORF ENST00000518683.5_1_8:87410815-87460532:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2782592773438 2 560.278792 1118.54303 0.85509 0.00047909 -0.32702 -0.00018323 0.52807 0.00029586 560.2787188238871 43.277 0.17099 43.261 43.184 43.355 -0.015667 12 7 2 0 0 0 0.036857 1 23219 23219 51.63 20.361 1 2806600 56475 3681 37844 38685 65695 65695 645 -0.011499206370217507 RYMDAWNTV 9 Unmodified _RYMDAWNTV_ 0 0 0 ENSG00000099800|ENST00000215570|TIMM13 ENSG00000099800|ENST00000215570|TIMM13 ENSG00000099800|ENST00000215570|TIMM13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.266845703125 2 578.266216 1154.51788 1.0176 0.00058845 0.58567 0.00033867 1.6033 0.00092712 578.2664248138892 54.484 0.45879 48.618 48.32 48.779 -5.8653 52 28 2 0 0 0 0.062454 1 34579 34579 41.956 5.4494 1 37496000 56476 1708 37845 38686 65696 65696 -0.053199754396246135 RYMDLAENARF 11 Oxidation (M) _RYM(Oxidation (M))DLAENARF_ RYM(1)DLAENARF RYM(51)DLAENARF 0 0 1 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.8913879394531 3 467.890838 1400.65068 -0.15884 -7.432E-05 0.67078 0.00031385 0.51194 0.00023953 468.22541630077376 37.517 0.36022 37.245 37.015 37.375 -0.27133 43 14 4 0 0 0 0.051143 1 19652 19652 50.648 44.78 1 7157400 56477 1737 37846 38687 65697 65697 296 -0.03361575773624281 RYMDLAENARF 11 Oxidation (M) _RYM(Oxidation (M))DLAENARF_ RYM(1)DLAENARF RYM(51)DLAENARF 0 0 1 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MSMS AL20221201_MKP_PDAC_01 4 467.892578125 3 467.890838 1400.65068 NaN NaN NaN NaN NaN NaN NaN 41.888 1 37.28 36.78 37.78 -4.6079 0 0 0 0.096553 1 25224 25224 51.264 42.82 1 56478 1737 37846 38687 65698 65698 296 -0.03361575773624281 RYMDLAENARF 11 Unmodified _RYMDLAENARF_ 0 0 0 ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L ENSG00000100014|ENST00000314328|SPECC1L MSMS AL20221201_MKP_PDAC_01 4 462.8932189941406 3 462.559199 1384.65577 NaN NaN NaN NaN NaN NaN NaN 52.386 1 46.652 46.152 47.152 -5.7345 0 0 0 0.055055 1 33068 33068 45.004 33.486 1 56479 1737 37846 38688 65699 65699 -0.021172719110154503 RYMDLLWRYYE 11 Unmodified _RYMDLLWRYYE_ 0 0 0 ENSG00000113569|ENST00000231498|NUP155;nc|ENSG00000113569|O75694-2|NUP155;ENST00000515054.1_1_5:37301511-37303501:-|nuORF ENSG00000113569|ENST00000231498|NUP155 ENSG00000113569|ENST00000231498|NUP155 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.3890380859375 2 804.387393 1606.76023 NaN NaN NaN NaN NaN NaN NaN 31.436 1 31.436 30.936 31.936 0 0 0 0 0.94165 1 16373 16373 1.3295 0 1 56480 2976 37847 38689 65700 65700 -0.018875701542583556 RYMEDMEQAF 10 Unmodified _RYMEDMEQAF_ 0 0 0 ENSG00000165912|ENST00000298838|PACSIN3 ENSG00000165912|ENST00000298838|PACSIN3 ENSG00000165912|ENST00000298838|PACSIN3 MSMS AL20221201_MKP_PDAC_01 4 660.2738037109375 2 660.27338 1318.53221 NaN NaN NaN NaN NaN NaN NaN 56.03 1 50.109 49.609 50.609 -5.9211 0 0 0 0.043469 1 35718 35718 76.825 55.288 1 56481 7404 37848 38690 65701 65701 -0.11431691073630645 RYMEVSGNL 9 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ RYM(1)EVSGNL RYM(44)EVSGNL 0 0 1 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7579956054688 2 542.758223 1083.50189 -0.60081 -0.0003261 -0.5046 -0.00027387 -1.1054 -0.00059997 542.7580662774293 28.023 0.3443 28.023 27.865 28.209 0 65 20 4 0 0 0 0.05483 2 14503 14403;14503 43.772 22.594 1 41190000 56482 9149 37849 38691 65702;65703 65703 1524 -0.03651681676501539 RYMEVSGNL 9 Oxidation (M) _RYM(Oxidation (M))EVSGNL_ RYM(1)EVSGNL RYM(89)EVSGNL 0 0 1 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7581787109375 2 542.758223 1083.50189 0.50173 0.00027232 -0.020952 -1.1372E-05 0.48078 0.00026095 542.758056833574 31.775 0.43574 28.079 27.886 28.322 -3.6958 61 23 3 0 0 0 0.0086209 2 17971 17971;18103 89.401 31.679 1 100590000 56483 9149 37849 38691 65704;65705 65704 1524 -0.03651681676501539 RYMEVSGNL 9 Unmodified _RYMEVSGNL_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.762451171875 2 534.760766 1067.50698 0.29651 0.00015856 1.2269 0.00065608 1.5234 0.00081464 534.7614348387076 38.046 0.31886 38.046 37.846 38.165 0 38 15 3 0 0 0 0.18144 1 20256 20256 24.991 3.2443 1 4326300 56484 9149 37849 38692 65706 65706 -0.02407377813869971 RYMEVSGNL 9 Unmodified _RYMEVSGNL_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7626342773438 2 534.760766 1067.50698 0.62361 0.00033348 -0.39625 -0.0002119 0.22737 0.00012159 534.7603070798197 43.363 0.77391 38.598 38.161 38.935 -4.7648 133 51 4 0 0 0 0.017075 3 26180 26180;26317;26458 66.457 34.151 1 171970000 56485 9149 37849 38692 65707;65708;65709 65707 -0.02407377813869971 RYMGLRYYCK 10 Unmodified _RYMGLRYYCK_ 0 0 0 REV__nc|ENSG00000165533|Q8TAM2-3|TTC8 REV__nc|ENSG00000165533|Q8TAM2-3|TTC8 MSMS AL20221201_MKP_PDAC_01 4 451.5572814941406 3 451.558254 1351.65293 NaN NaN NaN NaN NaN NaN NaN 46.571 1 41.491 40.991 41.991 -5.0805 0 0 0 0.76982 1 28804 28804 13.615 5.6695 1 + 56486 22019 37850 38693 65710 65710 -0.008828185694937929 RYMINLEVE 9 Unmodified _RYMINLEVE_ 0 0 0 ENSG00000187189|ENST00000420283|TSPYL4 ENSG00000187189|ENST00000420283|TSPYL4 ENSG00000187189|ENST00000420283|TSPYL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.798095703125 2 583.797349 1165.58014 0.49473 0.00028882 -0.019159 -1.1185E-05 0.47557 0.00027764 583.797515601673 82.695 0.2782 82.197 82.053 82.331 -0.49751 18 11 2 0 0 0 0.51218 1 45272 45272 6.7232 0 1 737340 56487 9544 37851 38694 65711 65711 0.003977509087235376 RYMKKKKTL 9 Unmodified _RYMKKKKTL_ 0 0 0 REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.8350524902344 3 399.249638 1194.72708 NaN NaN NaN NaN NaN NaN NaN 27.175 1 27.175 26.675 27.675 0 0 0 0 0.86031 1 13994 13994 0.23584 0.076522 1 + 56488 28002 37852 38695 65712 65712 0.13750892584334906 RYMKKKKTL 9 Unmodified _RYMKKKKTL_ 0 0 0 REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2482604980469 3 399.249638 1194.72708 NaN NaN NaN NaN NaN NaN NaN 39.357 1 39.368 38.868 39.868 0.011452 0 0 0 0.85359 1 20959 20959 1.0715 0 1 + 56489 28002 37852 38695 65713 65713 0.13750892584334906 RYMLTAGLTAF 11 Oxidation (M) _RYM(Oxidation (M))LTAGLTAF_ RYM(1)LTAGLTAF RYM(41)LTAGLTAF 0 0 1 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3267211914062 2 630.326273 1258.63799 0.89717 0.00056551 -0.63668 -0.00040132 0.26049 0.00016419 630.3259186196417 65.72 0.32219 65.726 65.547 65.869 0.0060196 24 15 2 0 0 0 0.11513 1 36049 36049 40.725 24.576 1 6074100 56490 9970 37853 38696 65714 65714 1611 0.019020128341480813 RYMLTAGLTAF 11 Unmodified _RYMLTAGLTAF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.8321533203125 2 622.328816 1242.64308 0.86381 0.00053758 0.2258 0.00014052 1.0896 0.0006781 622.3288599048078 95.151 0.23457 88.975 88.854 89.089 -6.1757 21 12 2 0 0 0 0.085069 1 62992 62992 53.317 36.204 1 14590000 56491 9970 37853 38697 65715 65715 0.031463166967796496 RYMNHMQSL 9 Oxidation (M) _RYM(Oxidation (M))NHMQSL_ RYM(0.994)NHM(0.006)QSL RYM(22)NHM(-22)QSL 0 0 1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2719116210938 2 598.270975 1194.5274 -0.24654 -0.0001475 -0.33077 -0.00019789 -0.57731 -0.00034539 598.2712218694103 22.768 0.29136 19.989 19.857 20.148 -2.7784 43 22 3 0 0 0 0.015445 1 12236 12236 68.081 33.679 2 6907900 56492 7457 37854 38698 65716 65716 1284 -0.06208530425715253 RYMNHMQSL 9 Unmodified _RYMNHMQSL_ 0 0 0 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20221201_MKP_PDAC_01 4 590.272705078125 2 590.273518 1178.53248 NaN NaN NaN NaN NaN NaN NaN 29.277 1 25.975 25.475 26.475 -3.3016 0 0 0 0.014715 1 16429 16429 85.642 39.621 1 56493 7457 37854 38699 65717 65717 -0.04964226563106422 RYMPPAHRNF 10 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ RYM(1)PPAHRNF RYM(61)PPAHRNF 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.8829650878906 3 435.548746 1303.62441 -0.58176 -0.00025339 -0.5854 -0.00025497 -1.1672 -0.00050836 435.5486163537378 18.023 0.27971 18.037 17.873 18.153 0.013865 195 43 6 0 0 0 0.04428 1 8968 8968 61.09 57.244 1 140670000 56494 4309 37855 38700 65718 65718 778 -0.015258001544225408 RYMPPAHRNF 10 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ RYM(1)PPAHRNF RYM(52)PPAHRNF 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.3220825195312 2 652.819481 1303.62441 0.90221 0.00058898 -1.2903 -0.00084232 -0.38806 -0.00025334 652.8187336768666 19.326 0.33977 16.669 16.495 16.835 -2.6564 54 27 3 0 0 0 0.077785 1 10167 10167 51.63 38.587 1 24500000 56495 4309 37855 38700 65719 65719 778 -0.015258001544225408 RYMPPAHRNF 10 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ RYM(1)PPAHRNF RYM(53)PPAHRNF 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5487365722656 3 435.548746 1303.62441 0.968 0.00042161 0.363 0.0001581 1.331 0.00057971 435.5487448246918 22.267 1.3835 19.532 18.662 20.046 -2.7348 187 89 3 0 0 0 0.07026 1 12122 12122 53.317 49.724 1 7021900 56496 4309 37855 38700 65720 65720 778 -0.015258001544225408 RYMPPAHRNF 10 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ RYM(1)PPAHRNF RYM(41)PPAHRNF 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.548828125 3 435.548746 1303.62441 0.31457 0.00013701 -0.34356 -0.00014964 -0.028985 -1.2624E-05 435.5486435131281 22.972 0.42539 20.194 19.933 20.359 -2.7784 45 29 2 0 0 0 0.14294 1 12349 12349 40.725 37.132 1 3693900 56497 4309 37855 38700 65721 65721 778 -0.015258001544225408 RYMPPAHRNF 10 Oxidation (M) _RYM(Oxidation (M))PPAHRNF_ RYM(1)PPAHRNF RYM(55)PPAHRNF 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 435.5491027832031 3 435.548746 1303.62441 NaN NaN NaN NaN NaN NaN NaN 21.12 1 18.427 17.927 18.927 -2.693 0 0 0 0.058206 1 11282 11282 55.235 50.828 1 56498 4309 37855 38700 65722 65722 778 -0.015258001544225408 RYMPPAHRNF 10 Unmodified _RYMPPAHRNF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2176513671875 3 430.217108 1287.62949 0.21732 9.3495E-05 1.8624 0.00080125 2.0797 0.00089474 430.2172999248797 19.945 1.4756 19.953 19.28 20.756 0.0078487 214 79 5 0 0 0 0.041224 6 10298 10093;10096;10193;10298;10405;10509 61.09 58.018 1 15983000 56499 4309 37855 38701 65723;65724;65725;65726;65727;65728 65726 -0.0028149629181370983 RYMPPAHRNF 10 Unmodified _RYMPPAHRNF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2171936035156 3 430.217108 1287.62949 0.32693 0.00014065 -0.59454 -0.00025578 -0.26762 -0.00011513 430.2168832010183 22.887 2.7506 20.108 18.971 21.722 -2.7784 624 176 6 0 0 0 0.013171 11 12593 12028;12129;12240;12356;12473;12593;12707;12811;12925;13042;13205 87.258 75.74 1 854800000 56500 4309 37855 38701 65729;65730;65731;65732;65733;65734;65735;65736;65737;65738;65739 65734 -0.0028149629181370983 RYMPPAHRNF 10 Unmodified _RYMPPAHRNF_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.8223876953125 2 644.822024 1287.62949 0.075868 4.8922E-05 -0.21138 -0.00013631 -0.13552 -8.7384E-05 644.8219129363039 22.873 1.0514 20.094 19.706 20.757 -2.7784 188 78 3 0 0 0 0.0022539 6 12234 12124;12234;12346;12462;12580;12686 107.19 85.65 1 13880000 56501 4309 37855 38701 65740;65741;65742;65743;65744;65745 65741 -0.0028149629181370983 RYMPPAHRNFL 11 Oxidation (M) _RYM(Oxidation (M))PPAHRNFL_ RYM(1)PPAHRNFL RYM(55)PPAHRNFL 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.578125 3 473.243434 1416.70847 0.16541 7.8279E-05 -0.25242 -0.00011945 -0.087009 -4.1176E-05 473.2434371707956 27.779 0.36604 27.809 27.619 27.985 0.029564 62 15 5 0 0 0 0.028917 2 14378 14378;14484 55.467 49.599 1 255520000 56502 4309 37856 38702 65746;65747 65746 778 0.016787309424898922 RYMPPAHRNFL 11 Oxidation (M) _RYM(Oxidation (M))PPAHRNFL_ RYM(1)PPAHRNFL RYM(65)PPAHRNFL 0 0 1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2450561523438 3 473.243434 1416.70847 0.95195 0.0004505 0.010375 4.9099E-06 0.96232 0.00045541 473.2431827859355 30.876 0.39134 27.379 27.211 27.602 -3.497 47 17 4 0 0 0 0.012958 2 17405 17405;17520 64.692 52.464 1 252610000 56503 4309 37856 38702 65748;65749 65748 778 0.016787309424898922 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.9114990234375 3 467.911796 1400.71356 -0.18649 -8.7262E-05 0.066045 3.0903E-05 -0.12045 -5.6359E-05 467.91172176358685 30.751 0.79821 30.781 30.498 31.296 0.030106 77 34 3 0 0 0 0.11933 3 16179 16031;16075;16179 44.945 44.247 1 3567700 56504 4309 37856 38703 65750;65751;65752 65752 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.9123840332031 3 467.911796 1400.71356 0.81207 0.00037998 -0.35129 -0.00016437 0.46078 0.00021561 467.91178139258 34.996 1.2381 30.901 30.473 31.711 -4.0951 233 75 4 0 0 0 1.5165999999999999E-28 6 20501 20004;20124;20255;20372;20501;20644 121.93 109.07 1 70413000 56505 4309 37856 38703 65753;65754;65755;65756;65757;65758 65757 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1866149902344 4 351.185666 1400.71356 1.6309 0.00057276 -0.415 -0.00014574 1.2159 0.00042702 351.4363157465678 35.028 0.8159 30.933 30.533 31.349 -4.0951 95 48 3 0 0 0 0.33405 1 20166 20166 15.538 14.083 1 14764000 56506 4309 37856 38703 65759 65759 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.9126586914062 3 467.911796 1400.71356 0.75641 0.00035393 0.041865 1.9589E-05 0.79827 0.00037352 467.91187780053724 68.45 0.7132 62.274 61.992 62.705 -6.1757 73 41 2 0 0 0 5.9796E-10 3 44583 44583;44736;44868 98.73 89.8 1 38612000 56507 4309 37856 38703 65760;65761;65762 65760 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 467.9126281738281 3 467.911796 1400.71356 NaN NaN NaN NaN NaN NaN NaN 67.852 1 61.676 61.176 62.176 -6.1757 0 0 0 0.00064334 1 44234 44234 66.683 59.206 1 56508 4309 37856 38703 65763 65763 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 467.9121398925781 3 467.911796 1400.71356 NaN NaN NaN NaN NaN NaN NaN 68.103 1 61.927 61.427 62.427 -6.1757 0 0 0 0.00035606 1 44424 44424 70.496 64.261 1 56509 4309 37856 38703 65764 65764 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 468.24658203125 3 467.911796 1400.71356 NaN NaN NaN NaN NaN NaN NaN 68.991 1 62.816 62.316 63.316 -6.1757 0 0 0 0.27338 1 45043 45043 33.821 22.922 1 56510 4309 37856 38703 65765 65765 0.02923034805098723 RYMPPAHRNFL 11 Unmodified _RYMPPAHRNFL_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MSMS AL20221201_MKP_PDAC_01 4 467.9125061035156 3 467.911796 1400.71356 NaN NaN NaN NaN NaN NaN NaN 69.317 1 63.141 62.641 63.641 -6.1757 0 0 0 0.00064334 1 45271 45271 83.278 71.05 1 56511 4309 37856 38703 65766 65766 0.02923034805098723 RYMPQNPCII 10 Carbamidomethyl (C) _RYMPQNPC(Carbamidomethyl (C))II_ RYMPQNPC(1)II RYMPQNPC(110)II 0 1 0 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF;ENST00000502424.1_1_5:14797477-14798464:-|nuORF nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.3179931640625 2 646.317925 1290.6213 1.1316 0.00073138 -1.4751 -0.00095339 -0.34351 -0.00022201 646.3177846663594 53.938 0.60325 48.072 47.897 48.5 -5.8653 84 35 4 0 0 0 0.0022539 2 34224 34078;34224 107.19 80.303 1 47278000 56512 6869 37857 38704 65767;65768 65768 676 -0.012388113234464981 RYMPQNPCII 10 Carbamidomethyl (C),Oxidation (M) _RYM(Oxidation (M))PQNPC(Carbamidomethyl (C))II_ RYMPQNPC(1)II RYM(1)PQNPCII RYMPQNPC(56)II RYM(56)PQNPCII 0 1 1 nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF;ENST00000502424.1_1_5:14797477-14798464:-|nuORF nc|ENSG00000162521|Q09028-3|RBBP4 nc|ENSG00000162521|Q09028-3|RBBP4 MSMS AL20221201_MKP_PDAC_01 4 654.3140258789062 2 654.315383 1306.61621 NaN NaN NaN NaN NaN NaN NaN 46.503 1 41.423 40.923 41.923 -5.0805 0 0 0 0.054531 1 28738 28738 56.177 32.156 1 56513 6869 37857 38705 65769 65769 676 1191 -0.024831151860325917 RYMPQNPHI 9 Unmodified _RYMPQNPHI_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8631896972656 3 385.862442 1154.5655 1.3573 0.00052374 -0.56039 -0.00021623 0.79694 0.00030751 385.86223404173523 32.146 0.45002 28.45 28.226 28.676 -3.6958 63 25 3 0 0 0 0.031062 2 18201 18201;18319 49.554 41.399 1 95297000 56514 2015 37858 38706 65770;65771 65770 -0.005602764487548484 RYMPQNPHI 9 Unmodified _RYMPQNPHI_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2899780273438 2 578.290025 1154.5655 0.98784 0.00057126 -1.2183 -0.00070453 -0.23046 -0.00013327 578.2893690486443 32.148 0.38408 28.453 28.271 28.655 -3.6958 60 22 4 0 0 0 0.0083938 2 18332 18205;18332 108 50.526 1 71840000 56515 2015 37858 38706 65772;65773 65773 -0.005602764487548484 RYMPQNPHI 9 Unmodified _RYMPQNPHI_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 578.290025 1154.5655 0.64176 0.00037112 0.26343 0.00015234 0.90519 0.00052346 578.2906151607269 28.503 0.11047 28.441 28.392 28.502 -0.06216 -0.0058867 0.0016303 NaN 108 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1208300 56516 2015 37858 38706 -0.005602764487548484 RYMPQNPHII 10 Oxidation (M) _RYM(Oxidation (M))PQNPHII_ RYM(1)PQNPHII RYM(56)PQNPHII 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.8291625976562 2 642.829514 1283.64448 0.047429 3.0489E-05 0.33087 0.0002127 0.3783 0.00024318 642.8296094148145 31.352 0.19736 31.249 31.136 31.333 -0.10269 16 7 3 0 0 0 0.0575 1 16288 16288 56.177 39.064 1 6803400 56517 2015 37859 38707 65774 65774 345 0.013999507855260163 RYMPQNPHII 10 Oxidation (M) _RYM(Oxidation (M))PQNPHII_ RYM(1)PQNPHII RYM(59)PQNPHII 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8306274414062 2 642.829514 1283.64448 0.77975 0.00050125 -0.10828 -6.9604E-05 0.67148 0.00043165 642.8294303775855 35.046 0.31904 30.951 30.771 31.09 -4.0951 33 18 2 0 0 0 0.04925 1 20262 20262 58.679 41.566 1 9676400 56518 2015 37859 38707 65775 65775 345 0.013999507855260163 RYMPQNPHII 10 Oxidation (M) _RYM(Oxidation (M))PQNPHII_ RYM(1)PQNPHII RYM(65)PQNPHII 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8289794921875 2 642.829514 1283.64448 0.46974 0.00030196 -0.08146 -5.2365E-05 0.38828 0.0002496 642.8294220080355 35.362 0.25936 31.267 31.09 31.349 -4.0951 26 15 2 0 0 0 0.035736 1 20472 20472 65.235 48.122 1 12500000 56519 2015 37859 38707 65776 65776 345 0.013999507855260163 RYMPQNPHII 10 Unmodified _RYMPQNPHII_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5576477050781 3 423.55713 1267.64956 0.94687 0.00040105 -0.22657 -9.5965E-05 0.7203 0.00030509 423.55720217423806 42.241 0.49006 37.556 37.317 37.807 -4.6846 92 31 4 0 0 0 0.02987 3 25362 25362;25496;25631 49.527 42.05 1 117820000 56520 2015 37859 38708 65777;65778;65779 65777 0.026442546481575846 RYMPQNPHII 10 Unmodified _RYMPQNPHII_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8319091796875 2 634.832057 1267.64956 0.51914 0.00032957 -0.27649 -0.00017552 0.24265 0.00015404 634.8321218352686 42.23 0.35506 37.545 37.377 37.732 -4.6846 56 22 3 0 0 0 0.00060102 2 25548 25406;25548 115.69 60.918 1 34039000 56521 2015 37859 38708 65780;65781 65781 0.026442546481575846 RYMQWRETM 9 Oxidation (M) _RYMQWRETM(Oxidation (M))_ RYMQWRETM(1) RYM(-100)QWRETM(100) 0 0 1 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.8692932128906 3 439.533997 1315.58016 0.66527 0.00029241 -0.10634 -4.6741E-05 0.55893 0.00024567 439.53384980318833 29.973 0.28706 26.672 26.48 26.767 -3.3016 22 13 2 0 0 0 0.0085526 1 16839 16839 107.56 79.069 2 30429000 56522 1436 37860 38709 65782 65782 240;241 -0.06500572362938328 RYMQWRETM 9 Oxidation (M) _RYM(Oxidation (M))QWRETM_ RYM(1)QWRETM RYM(62)QWRETM(-62) 0 0 1 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MSMS AL20221201_MKP_PDAC_01 4 658.800048828125 2 658.797357 1315.58016 NaN NaN NaN NaN NaN NaN NaN 31.151 1 27.456 26.956 27.956 -3.6958 0 0 0 0.027645 1 17622 17622 69.105 42.837 2 56523 1436 37860 38709 65783 65783 240;241 -0.06500572362938328 RYMQWRETM 9 Oxidation (M) _RYM(Oxidation (M))QWRETM_ RYM(1)QWRETM RYM(79)QWRETM(-79) 0 0 1 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MSMS AL20221201_MKP_PDAC_01 4 439.536376953125 3 439.533997 1315.58016 NaN NaN NaN NaN NaN NaN NaN 31.443 1 27.747 27.247 28.247 -3.6958 0 0 0 0.01742 1 17806 17806 81.915 65.641 2 56524 1436 37860 38709 65784 65784 240;241 -0.06500572362938328 RYMQWRETM 9 Unmodified _RYMQWRETM_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.202880859375 3 434.202359 1299.58525 0.38822 0.00016857 0.0081326 3.5312E-06 0.39635 0.0001721 434.2024133803569 39.882 0.33633 35.353 35.14 35.477 -4.5294 49 22 3 0 0 0 0.00065891 2 23659 23659;23796 117.84 85.8 1 38026000 56525 1436 37860 38710 65785;65786 65785 -0.0525626850030676 RYMQWRETM 9 Unmodified _RYMQWRETM_ 0 0 0 ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC ENSG00000086544|ENST00000263370|ITPKC MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.7988891601562 2 650.7999 1299.58525 0.22445 0.00014607 0.19035 0.00012388 0.4148 0.00026995 650.7999227663005 39.848 0.22765 35.319 35.188 35.416 -4.5294 21 14 2 0 0 0 0.012228 1 23705 23705 74.2 56.053 1 22032000 56526 1436 37860 38710 65787 65787 -0.0525626850030676 RYMRIYRRYIY 11 Unmodified _RYMRIYRRYIY_ 0 0 0 KIF26B-C1orf101|2|fusion;nc|ENSG00000179397|Q5SY80-3|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE KIF26B-C1orf101|2|fusion KIF26B-C1orf101|2|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.9470825195312 2 826.945744 1651.87694 NaN NaN NaN NaN NaN NaN NaN 101.5 1 101.46 100.96 101.96 -0.04216 0 0 0 0.9435 1 56393 56393 0 0 1 56527 15940 37861 38711 65788 65788 0.07707212856143997 RYMSHKLKI 9 Unmodified _RYMSHKLKI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5628051757812 3 392.562104 1174.66448 0.71337 0.00028004 -0.55369 -0.00021736 0.15968 6.2685E-05 392.5622141432419 78.676 0.80447 72.5 72.204 73.008 -6.1757 115 47 3 0 0 0 0.012586 4 51570 51304;51442;51570;51708 73.196 30.019 1 30740000 56528 3289 37862 38712 65789;65790;65791;65792 65791 0.08413746516134779 RYMSHKLKI 9 Unmodified _RYMSHKLKI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 ENSG00000117226|ENST00000370481|GBP3 MSMS AL20221201_MKP_PDAC_01 4 392.5624389648438 3 392.562104 1174.66448 NaN NaN NaN NaN NaN NaN NaN 21.442 1 18.708 18.208 19.208 -2.7348 0 0 0 0.10213 1 11484 11484 42.835 20.177 1 56529 3289 37862 38712 65793 65793 0.08413746516134779 RYMSINTHL 9 Oxidation (M) _RYM(Oxidation (M))SINTHL_ RYM(1)SINTHL RYM(51)SINTHL 0 0 1 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.787841796875 2 575.787315 1149.56008 0.38262 0.00022031 0.56146 0.00032328 0.94408 0.00054359 575.7876600141348 27.88 0.23839 27.909 27.799 28.037 0.029564 21 9 3 0 0 0 0.037253 1 14489 14489 51.415 9.5756 1 5996900 56530 4502 37863 38713 65794 65794 819 -0.00872000031222342 RYMSINTHL 9 Unmodified _RYMSINTHL_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8625793457031 3 378.862331 1133.56516 2.1389 0.00081033 -1.2055 -0.00045672 0.93337 0.00035362 378.8621415648791 41.745 0.47588 37.137 36.952 37.428 -4.6079 80 29 4 0 0 0 0.025842 2 25024 25024;25161 46.022 33.15 1 41213000 56531 4502 37863 38714 65795;65796 65795 0.003723038314092264 RYMSINTHL 9 Unmodified _RYMSINTHL_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7905883789062 2 567.789858 1133.56516 1.7846 0.0010133 -0.56806 -0.00032254 1.2165 0.00069072 567.7895486293982 41.737 0.45362 37.129 36.923 37.377 -4.6079 53 28 2 0 0 0 0.085319 2 25200 25056;25200 36.506 8.8774 1 107220000 56532 4502 37863 38714 65797;65798 65798 0.003723038314092264 RYMSINTHL 9 Unmodified _RYMSINTHL_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MSMS AL20221201_MKP_PDAC_01 4 378.8622436523438 3 378.862331 1133.56516 NaN NaN NaN NaN NaN NaN NaN 42.879 1 38.195 37.695 38.695 -4.6846 0 0 0 0.6306 1 25966 25966 7.609 0.50723 1 56533 4502 37863 38714 65799 65799 0.003723038314092264 RYMSINTHL 9 Unmodified _RYMSINTHL_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 567.789858 1133.56516 0.0062004 3.5205E-06 -2.0268 -0.0011508 -2.0206 -0.0011473 567.7903981209095 37.374 0.18924 37.103 36.992 37.181 -0.27133 0.0086245 -0.0017633 NaN 36.506 20 7 4 NaN NaN NaN NaN 0 NaN NaN 0 1854600 56534 4502 37863 38714 0.003723038314092264 RYMSINTHL 9 Unmodified _RYMSINTHL_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.789858 1133.56516 -0.03826 -2.1724E-05 1.0492 0.00059573 1.011 0.00057401 567.7903081460738 37.03 0.16601 37.051 36.923 37.089 0.021545 -0.043455 0.0017297 NaN 36.506 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 685170 56535 4502 37863 38714 0.003723038314092264 RYMTDGMLL 9 2 Oxidation (M) _RYM(Oxidation (M))TDGM(Oxidation (M))LL_ RYM(1)TDGM(1)LL RYM(44)TDGM(44)LL 0 0 2 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 ENSG00000204560|ENST00000376442|DHX16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2616577148438 2 566.262284 1130.51002 0.64515 0.00036532 -0.73354 -0.00041538 -0.088391 -5.0052E-05 566.2621452754266 38.862 0.45571 38.862 38.66 39.115 0 49 20 3 0 0 0 0.05483 1 20742 20742 43.772 19.752 1 6085300 56536 10300 37864 38715 65800 65800 1677;1678 -0.050018707513572735 RYMVFRSML 9 Unmodified _RYMVFRSML_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.812255859375 2 601.812279 1201.61 0.21241 0.00012783 0.8587 0.00051678 1.0711 0.00064461 601.8125983525955 91.403 0.21975 85.227 85.111 85.331 -6.1757 17 11 2 0 0 0 0.13639 1 60429 60429 38.176 18.919 1 4981100 56537 1413 37865 38716 65801 65801 0.01726411373101655 RYMVFRSML 9 Unmodified _RYMVFRSML_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5443420410156 3 401.543945 1201.61 0.98495 0.0003955 -0.11754 -4.7197E-05 0.86741 0.0003483 401.5439911855826 91.415 0.20535 85.24 85.145 85.351 -6.1757 24 10 3 0 0 0 0.085786 1 60462 60462 36.395 26.631 1 8691100 56538 1413 37865 38716 65802 65802 0.01726411373101655 RYMVHLLEL 9 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ RYM(1)VHLLEL RYM(42)VHLLEL 0 0 1 nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3237915039062 2 595.323534 1188.63251 0.39918 0.00023764 0.075816 4.5135E-05 0.475 0.00028278 595.3236324263901 58.04 0.29247 57.551 57.41 57.702 -0.48974 36 13 3 0 0 0 0.06294 1 31517 31517 41.84 23.693 1 7727000 56539 4972 37866 38717 65803 65803 909 0.04574334042354167 RYMVHLLEL 9 Oxidation (M) _RYM(Oxidation (M))VHLLEL_ RYM(1)VHLLEL RYM(56)VHLLEL 0 0 1 nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3250122070312 2 595.323534 1188.63251 0.42614 0.00025369 2.2776 0.0013559 2.7037 0.0016096 595.3247065026006 91.279 0.74174 85.103 84.854 85.596 -6.1757 77 41 3 0 0 0 0.028475 1 60259 60259 56.177 18.203 1 16829000 56540 4972 37866 38717 65804 65804 909 0.04574334042354167 RYMVHLLEL 9 Unmodified _RYMVHLLEL_ 0 0 0 nc|ENSG00000137814|Q9NVX0-2|HAUS2;nc|ENSG00000137814|Q9NVX0-3|HAUS2;ENSG00000137814|ENST00000260372|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 nc|ENSG00000137814|Q9NVX0-2|HAUS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8870239257812 3 391.886476 1172.6376 1.6631 0.00065176 -0.70159 -0.00027494 0.96154 0.00037682 391.88624665926494 95.675 0.29276 89.5 89.351 89.644 -6.1757 46 18 3 0 0 0 0.2546 2 63443 63323;63443 19.362 8.99 1 34209000 56541 4972 37866 38718 65805;65806 65806 0.05818637904985735 RYMVQFKE 8 Unmodified _RYMVQFKE_ 0 0 0 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20221201_MKP_PDAC_01 4 550.7816162109375 2 550.781502 1099.54845 NaN NaN NaN NaN NaN NaN NaN 18.945 1 16.324 15.824 16.824 -2.6215 0 0 0 0.94494 1 10006 10006 11.64 4.3511 1 + 56542 20122 37867 38719 65807 65807 0.0026580294545510696 RYMYIYLYLY 10 Unmodified _RYMYIYLYLY_ 0 0 0 REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF REV__ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 730.8657836914062 2 730.867774 1459.72099 NaN NaN NaN NaN NaN NaN NaN 95.766 1 95.398 94.898 95.898 -0.36814 0 0 0 1.0019 1 52306 52306 0.45834 0.18932 1 + 56543 28215 37868 38720 65808 65808 0.009523295621647776 RYMYWADWG 9 Unmodified _RYMYWADWG_ 0 0 0 ENST00000444995.7_1_22:25771803-25801278:-|nuORF ENST00000444995.7_1_22:25771803-25801278:-|nuORF ENST00000444995.7_1_22:25771803-25801278:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5155639648438 3 416.514931 1246.52296 1.2437 0.00051803 -0.32664 -0.00013605 0.91708 0.00038198 416.514858810791 32.157 0.44737 28.38 28.165 28.612 -3.7772 97 25 6 0 0 0 0.55144 1 18320 18320 2.4985 0 1 71235000 56544 13445 37869 38721 65809 65809 -0.09043671577001078 RYNAMRSYYHY 11 Unmodified _RYNAMRSYYHY_ 0 0 0 REV__nc|ENSG00000157985|Q9UPQ3-3|AGAP1 REV__nc|ENSG00000157985|Q9UPQ3-3|AGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2886962890625 3 508.566465 1522.67757 0.52065 0.00026478 -1.232 -0.00062653 -0.71131 -0.00036175 508.89970605355416 49.861 0.17772 49.469 49.333 49.51 -0.3923 19 8 3 0 0 0 0.30584 1 26766 26766 1.3296 0.82369 1 4183500 + 56545 21408 37870 38722 65810 65810 -0.06286467162408371 RYNATVYS 8 Unmodified _RYNATVYS_ 0 0 0 nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ;nc|ENSG00000149177|Q12913-2|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2397766113281 2 487.240524 972.466495 NaN NaN NaN NaN NaN NaN NaN 24.958 1 24.958 24.458 25.458 0 0 0 0 0.62748 1 12774 12774 32.305 2.0807 1 56546 16261 37871 38723 65811 65811 -0.020839761420006653 RYNDYRFQQ 9 Unmodified _RYNDYRFQQ_ 0 0 0 REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA REV__nc|ENSG00000090316|Q7L5Y9-3|MAEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.5404663085938 3 430.538904 1288.59488 NaN NaN NaN NaN NaN NaN NaN 18.204 1 18.21 17.71 18.71 0.0060463 0 0 0 0.82739 1 9216 9216 2.4985 1.427 1 + 56547 17853 37872 38724 65812 65812 -0.03787040898919258 RYNECLMNF 9 Carbamidomethyl (C),Oxidation (M) _RYNEC(Carbamidomethyl (C))LM(Oxidation (M))NF_ RYNEC(1)LMNF RYNECLM(1)NF RYNEC(56)LMNF RYNECLM(56)NF 0 1 1 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L ENSG00000138767|ENST00000504123|CNOT6L ENSG00000138767|ENST00000504123|CNOT6L MSMS AL20221201_MKP_PDAC_01 4 631.76953125 2 631.768265 1261.52198 NaN NaN NaN NaN NaN NaN NaN 44.25 1 39.398 38.898 39.898 -4.852 0 0 0 0.054801 1 26991 26991 55.503 42.46 1 56548 5102 37873 38725 65813 65813 520 939 -0.09832254008188102 RYNECLMNF 9 Carbamidomethyl (C) _RYNEC(Carbamidomethyl (C))LMNF_ RYNEC(1)LMNF RYNEC(42)LMNF 0 1 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L ENSG00000138767|ENST00000504123|CNOT6L ENSG00000138767|ENST00000504123|CNOT6L MSMS AL20221201_MKP_PDAC_01 4 623.769775390625 2 623.770808 1245.52706 NaN NaN NaN NaN NaN NaN NaN 59.704 1 53.59 53.09 54.09 -6.1147 0 0 0 0.10661 1 38356 38356 41.956 17.935 1 56549 5102 37873 38726 65814 65814 520 -0.08587950145602008 RYNEKCFKL 9 Unmodified _RYNEKCFKL_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8771057128906 3 400.877981 1199.61211 -0.17944 -7.1932E-05 0.87276 0.00034987 0.69333 0.00027794 400.878410156664 35.109 0.18987 35.136 34.996 35.186 0.027401 17 8 3 0 0 0 0.40476 1 18531 18531 12.175 8.5877 1 1160200 56550 3064 37874 38727 65815 65815 0.020291633825308963 RYNEKCFKL 9 Carbamidomethyl (C) _RYNEKC(Carbamidomethyl (C))FKL_ RYNEKC(1)FKL RYNEKC(160)FKL 0 1 0 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8861999511719 3 419.885135 1256.63358 0.88303 0.00037077 -0.19293 -8.1007E-05 0.69011 0.00028977 419.8851246728954 29.737 0.49373 26.435 26.232 26.726 -3.3016 83 26 4 0 0 0 2.1581E-06 3 16648 16648;16766;16879 158.08 117.35 1 851140000 56551 3064 37874 38728 65816;65817;65818 65816 316 0.015525484112231425 RYNEKCFKL 9 Carbamidomethyl (C) _RYNEKC(Carbamidomethyl (C))FKL_ RYNEKC(1)FKL RYNEKC(140)FKL 0 1 0 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8253784179688 2 629.324065 1256.63358 0.38455 0.00024201 -0.3146 -0.00019799 0.069949 4.402E-05 629.3240524410045 29.744 0.32071 26.442 26.285 26.606 -3.3016 30 16 3 0 0 0 0.0014462 2 16711 16711;16838 136.39 90.693 1 41000000 56552 3064 37874 38728 65819;65820 65819 316 0.015525484112231425 RYNERLDRLFI 11 Unmodified _RYNERLDRLFI_ 0 0 0 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2784118652344 3 498.944042 1493.8103 -0.023204 -1.1578E-05 0.33859 0.00016894 0.31539 0.00015736 498.94419359842783 51.569 0.33331 51.515 51.342 51.675 -0.053875 51 16 4 0 0 0 0.2905 1 27884 27884 27.289 23.443 1 20110000 56553 4452 37875 38729 65821 65821 0.08314300565871235 RYNERLDRLFI 11 Unmodified _RYNERLDRLFI_ 0 0 0 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 ENSG00000132801|ENST00000255152|ZSWIM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.9450073242188 3 498.944042 1493.8103 0.90341 0.00045075 -0.77377 -0.00038607 0.12964 6.4682E-05 498.9443872055114 91.31 0.24258 85.134 85.028 85.27 -6.1757 33 13 3 0 0 0 0.32558 1 60354 60354 25.438 11.919 1 17894000 56554 4452 37875 38729 65822 65822 0.08314300565871235 RYNESLTNF 9 Unmodified _RYNESLTNF_ 0 0 0 ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2742309570312 2 572.275095 1142.53564 0.2042 0.00011686 -0.801 -0.00045839 -0.5968 -0.00034153 572.2749490939651 42.09 0.2033 42.09 41.921 42.125 0 25 10 3 0 0 0 0.023481 1 22710 22710 60.074 10.141 1 12298000 56555 2956 37876 38730 65823 65823 -0.029929369131195926 RYNGGLLEF 9 Unmodified _RYNGGLLEF_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.778564453125 2 534.777274 1067.53999 0.18034 9.644E-05 0.46131 0.0002467 0.64165 0.00034314 534.7778010689813 61.899 0.31511 61.899 61.728 62.044 0 32 13 3 0 0 0 0.45045 1 34582 34582 10.074 2.1638 1 4393700 56556 10197 37877 38731 65824 65824 0.008925723004722386 RYNGGLLEF 9 Unmodified _RYNGGLLEF_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.77783203125 2 534.777274 1067.53999 0.65981 0.00035285 0.51036 0.00027293 1.1702 0.00062578 534.7771751839431 62.204 0.6107 61.717 61.345 61.956 -0.48764 77 28 5 0 0 0 0.031062 2 33852 33852;33959 54.774 20.671 1 35287000 56557 10197 37877 38731 65825;65826 65825 0.008925723004722386 RYNGGLLEF 9 Unmodified _RYNGGLLEF_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.77734375 2 534.777274 1067.53999 0.70946 0.0003794 0.36176 0.00019346 1.0712 0.00057287 534.7771240867189 67.327 0.5602 61.152 60.857 61.418 -6.1757 91 31 4 0 0 0 0.10734 1 43933 43933 32.305 5.4218 1 80228000 56558 10197 37877 38731 65827 65827 0.008925723004722386 RYNGGLLEF 9 Unmodified _RYNGGLLEF_ 0 0 0 ENSG00000198919|ENST00000361582|DZIP3;nc|ENSG00000198919|Q86Y13-2|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 ENSG00000198919|ENST00000361582|DZIP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.777274 1067.53999 0.18034 9.644E-05 0.46131 0.0002467 0.64165 0.00034314 534.7778010689813 61.899 0.31511 61.899 61.728 62.044 0 0.091116 -2.7846E-05 NaN 54.774 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4393700 56559 10197 37877 38731 0.008925723004722386 RYNHITATY 9 Unmodified _RYNHITATY_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.193603515625 3 380.192845 1137.55671 0.34622 0.00013163 2.6899 0.0010227 3.0362 0.0011543 380.1936401885621 25.48 0.21273 22.597 22.464 22.677 -2.8831 24 11 3 0 0 0 0.23158 1 13956 13956 19.362 11.753 1 6625500 56560 7065 37878 38732 65828 65828 -0.0065692681357631955 RYNHITATYF 10 Unmodified _RYNHITATYF_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3208618164062 2 643.319837 1284.62512 0.36865 0.00023716 0.41679 0.00026813 0.78545 0.00050529 643.3203737576312 39.189 0.19699 39.201 39.084 39.281 0.011456 20 8 3 0 0 0 0.20962 1 20878 20878 32.786 20.545 1 1055300 56561 7065 37879 38733 65829 65829 -0.005806822337262929 RYNHITATYF 10 Unmodified _RYNHITATYF_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2161560058594 3 429.21565 1284.62512 0.3397 0.0001458 0.59194 0.00025407 0.93164 0.00039988 429.2159019032676 39.193 0.28091 39.205 39.063 39.344 0.011452 37 12 4 0 0 0 0.1942 1 20885 20885 35.612 27.457 1 5529000 56562 7065 37879 38733 65830 65830 -0.005806822337262929 RYNHITATYF 10 Unmodified _RYNHITATYF_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2167358398438 3 429.21565 1284.62512 0.73415 0.00031511 0.28174 0.00012093 1.0159 0.00043604 429.21566264636755 43.846 0.37354 39.081 38.874 39.248 -4.7648 45 23 3 0 0 0 0.16361 1 26630 26630 32.898 26.663 1 18476000 56563 7065 37879 38733 65831 65831 -0.005806822337262929 RYNHITATYF 10 Unmodified _RYNHITATYF_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3211669921875 2 643.319837 1284.62512 0.44711 0.00028763 -0.11678 -7.5129E-05 0.33032 0.0002125 643.319688941128 43.838 0.23762 39.073 38.95 39.188 -4.7648 25 14 2 0 0 0 0.060508 1 26640 26640 55.503 38.937 1 9471300 56564 7065 37879 38733 65832 65832 -0.005806822337262929 RYNHITATYF 10 Unmodified _RYNHITATYF_ 0 0 0 ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK ENSG00000163788|ENST00000296088|SNRK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 429.21565 1284.62512 -0.05353 -2.2976E-05 0.20282 8.7051E-05 0.14929 6.4076E-05 429.2156514463909 39.529 0.19722 39.232 39.133 39.33 -0.29716 0.059282 -0.00025855 NaN 32.898 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1142100 56565 7065 37879 38733 -0.005806822337262929 RYNHIVGCTF 10 Carbamidomethyl (C) _RYNHIVGC(Carbamidomethyl (C))TF_ RYNHIVGC(1)TF RYNHIVGC(56)TF 0 1 0 ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF ENST00000367607.7_2_1:179924016-179959652:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 633.8062744140625 2 633.806039 1265.59753 NaN NaN NaN NaN NaN NaN NaN 38.287 1 33.918 33.418 34.418 -4.3689 0 0 0 0.054531 1 22564 22564 56.177 40.33 1 56566 12245 37880 38734 65833 65833 973 -0.02464908765614382 RYNNFFQDL 9 Unmodified _RYNNFFQDL_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;ENST00000551743.5_1_14:105849507-105861006:+|nuORF;ENST00000547903.1_1_14:105848293-105857603:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7902221679688 2 608.790912 1215.56727 0.66912 0.00040736 -2.2287 -0.0013568 -1.5595 -0.00094944 608.7892707981307 67.921 0.21898 67.439 67.299 67.518 -0.48219 19 9 3 0 0 0 0.098164 1 37108 37108 43.858 22.321 1 1947000 56567 8832 37881 38735 65834 65834 -0.031889441591374634 RYNPENNTW 9 Unmodified _RYNPENNTW_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2686157226562 2 597.270344 1192.52613 -0.773 -0.00046169 0.38647 0.00023083 -0.38653 -0.00023086 597.2705849097781 30.519 0.24712 30.519 30.402 30.65 0 34 11 4 0 0 0 0.018061 1 15837 15837 62.573 40.826 1 7323100 56568 3240 37882 38736 65835 65835 -0.062427051986333026 RYNPNLNTW 9 Unmodified _RYNPNLNTW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2911987304688 2 589.291079 1176.56761 0.11624 6.8499E-05 0.90976 0.00053611 1.026 0.00060461 589.2912980580006 42.92 0.23548 42.609 42.505 42.741 -0.31039 19 10 2 0 0 0 0.00856 1 22831 22831 100.37 58.277 1 6021000 56569 8757 37883 38737 65836 65836 -0.013615244393122339 RYNPNLNTW 9 Unmodified _RYNPNLNTW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2908935546875 2 589.291079 1176.56761 0.49701 0.00029289 0.1851 0.00010908 0.68212 0.00040196 589.2916477767965 42.629 0.21818 42.62 42.467 42.686 -0.0088196 21 9 3 0 0 0 0.0095811 1 22811 22811 81.613 47.511 1 6472600 56570 8757 37883 38737 65837 65837 -0.013615244393122339 RYNPNLNTW 9 Unmodified _RYNPNLNTW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2916259765625 2 589.291079 1176.56761 1.3069 0.00077014 -0.81459 -0.00048003 0.49231 0.00029011 589.2908242883867 47.79 0.62135 42.556 42.212 42.834 -5.2339 93 37 3 0 0 0 0.0044708 3 29653 29522;29653;29788 118.89 64.121 1 73363000 56571 8757 37883 38737 65838;65839;65840 65839 -0.013615244393122339 RYNPRILFQL 10 Unmodified _RYNPRILFQL_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.5911865234375 3 440.59094 1318.75099 0.92223 0.00040633 -1.359 -0.00059878 -0.43681 -0.00019246 440.59039279190256 65.293 0.22685 65.293 65.16 65.387 1.5259E-05 23 10 3 0 0 0 0.13391 1 35803 35803 29.437 22.4 1 7956100 56572 7273 37884 38738 65841 65841 0.1043644934236454 RYNPRILFQL 10 Unmodified _RYNPRILFQL_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.381103515625 2 660.382771 1318.75099 0.74496 0.00049196 0.44663 0.00029495 1.1916 0.0007869 660.3830726397572 94.726 0.23415 88.551 88.426 88.66 -6.1757 31 13 3 0 0 0 0.035736 1 62701 62701 65.235 32.449 1 14774000 56573 7273 37884 38738 65842 65842 0.1043644934236454 RYNPRILFQL 10 Unmodified _RYNPRILFQL_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.5911865234375 3 440.59094 1318.75099 1.1822 0.00052086 0.12581 5.5432E-05 1.308 0.00057629 440.5908660424794 94.722 0.26852 88.546 88.392 88.66 -6.1757 34 15 3 0 0 0 0.085354 1 62709 62709 35.612 23.385 1 27724000 56574 7273 37884 38738 65843 65843 0.1043644934236454 RYNPRTNQW 9 Unmodified _RYNPRTNQW_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.207763671875 3 412.207377 1233.6003 -0.025919 -1.0684E-05 0.14238 5.8691E-05 0.11646 4.8007E-05 412.20744011237974 22.319 0.22801 22.336 22.186 22.414 0.01749 27 9 4 0 0 0 0.12424 1 11428 11428 28.495 14.276 1 9203200 56575 1185 37885 38739 65844 65844 -0.007153173164397231 RYNPRTNQW 9 Unmodified _RYNPRTNQW_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.8076782226562 2 617.807428 1233.6003 NaN NaN NaN NaN NaN NaN NaN 22.325 1 22.342 21.842 22.842 0.01749 0 0 0 0.71962 1 11463 11463 8.7454 4.8691 1 56576 1185 37885 38739 65845 65845 -0.007153173164397231 RYNPRTNQW 9 Unmodified _RYNPRTNQW_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2080078125 3 412.207377 1233.6003 0.40955 0.00016882 0.94636 0.0003901 1.3559 0.00055892 412.20791079449685 24.686 0.40388 21.803 21.541 21.945 -2.8831 61 22 4 0 0 0 0.12424 2 13482 13374;13482 28.495 16.32 1 34406000 56577 1185 37885 38739 65846;65847 65847 -0.007153173164397231 RYNPRTNQW 9 Unmodified _RYNPRTNQW_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8075561523438 2 617.807428 1233.6003 0.047284 2.9212E-05 0.45381 0.00028037 0.50109 0.00030958 618.3091835958653 24.665 0.31694 21.782 21.617 21.934 -2.8831 39 17 3 0 0 0 0.14 1 13413 13413 29.082 12.932 1 7619600 56578 1185 37885 38739 65848 65848 -0.007153173164397231 RYNPSSHVL 9 Unmodified _RYNPSSHVL_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.78076171875 2 536.780348 1071.54614 -0.12214 -6.5562E-05 0.28361 0.00015224 0.16147 8.6674E-05 536.7805372433214 23.455 0.24174 23.455 23.347 23.588 0 17 11 2 0 0 0 0.46501 1 11961 11961 9.3831 2.66 1 1057400 56579 6380 37886 38740 65849 65849 0.01323090531991511 RYNPSSHVL 9 Unmodified _RYNPSSHVL_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.780517578125 2 536.780348 1071.54614 -0.077353 -4.1521E-05 -0.42816 -0.00022983 -0.50551 -0.00027135 536.7803788807307 23.517 0.19442 23.53 23.433 23.628 0.012396 14 8 2 0 0 0 0.12424 1 12008 12008 30.637 14.789 1 3872200 56580 6380 37886 38740 65850 65850 0.01323090531991511 RYNPSSHVL 9 Unmodified _RYNPSSHVL_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2828369140625 2 536.780348 1071.54614 0.17025 9.1386E-05 0.54425 0.00029214 0.7145 0.00038353 536.7805592726614 26.252 0.35117 23.301 23.13 23.481 -2.9511 56 19 4 0 0 0 0.06294 2 14401 14401;14528 41.84 18.555 1 32204000 56581 6380 37886 38740 65851;65852 65851 0.01323090531991511 RYNRKRWTFQF 11 Unmodified _RYNRKRWTFQF_ 0 0 0 ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF ENST00000443361.1_1_9:108287470-108288637:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 801.4241333007812 2 801.426033 1600.83751 NaN NaN NaN NaN NaN NaN NaN 78.18 1 72.005 71.505 72.505 -6.1757 0 0 0 0.94301 1 51163 51163 0.35063 0 1 56582 13422 37887 38741 65853 65853 0.06112828896903011 RYNRLLKTI 9 Unmodified _RYNRLLKTI_ 0 0 0 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 REV__nc|ENSG00000155363|Q9HCE1-2|MOV10 MSMS AL20221201_MKP_PDAC_01 4 392.8440246582031 3 392.911902 1175.71388 NaN NaN NaN NaN NaN NaN NaN 93.174 1 86.998 86.498 87.498 -6.1757 0 0 0 0.82283 1 61656 61656 4.897 2.1618 1 + 56583 27458 37888 38742 65854 65854 0.13304777796611233 RYNSQLLSF 9 Unmodified _RYNSQLLSF_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.297119140625 2 564.29583 1126.57711 0.4286 0.00024186 4.0687 0.002296 4.4973 0.0025378 564.2971884928172 58.299 0.1813 57.808 57.701 57.883 -0.49079 13 8 2 0 0 0 0.21643 1 31691 31691 21.537 5.6898 1 1630700 56584 1077 37889 38743 65855 65855 0.018882438462242135 RYNSQLLSF 9 Unmodified _RYNSQLLSF_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.301025390625 2 564.29583 1126.57711 1.1612 0.00065527 3.6159 0.0020404 4.7771 0.0026957 564.2981035832543 57.896 0.33541 57.83 57.655 57.99 -0.066032 43 16 4 0 0 0 0.023481 2 31496 31496;31600 60.074 8.4441 1 13559000 56585 1077 37889 38743 65856;65857 65856 0.018882438462242135 RYNSSVNEW 9 Unmodified _RYNSSVNEW_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.7454223632812 2 577.764894 1153.51524 0.81683 0.00047194 3.6758 0.0021238 4.4927 0.0025957 577.7671572600522 35.564 0.13962 31.371 31.301 31.44 -4.1928 17 8 3 0 0 0 0.061392 1 20623 20623 43.772 18.373 1 9467800 56586 6856 37890 38744 65858 65858 -0.05538107572920126 RYNTQLKANF 10 Unmodified _RYNTQLKANF_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8908081054688 3 418.891166 1253.65167 -0.31867 -0.00013349 0.54813 0.00022961 0.22946 9.6121E-05 418.89119040241536 31.682 0.12677 31.712 31.648 31.775 0.030106 11 5 3 0 0 0 0.5933 1 16644 16644 10.315 8.0625 1 1324800 56587 5274 37891 38745 65859 65859 0.03499006657602877 RYNTQLKANF 10 Unmodified _RYNTQLKANF_ 0 0 0 ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 ENSG00000140836|ENST00000268489|ZFHX3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.5057373046875 3 418.891166 1253.65167 1.2781 0.00053538 0.64352 0.00026957 1.9216 0.00080494 418.8912599424861 35.648 0.1473 31.455 31.394 31.541 -4.1928 11 8 2 0 0 0 0.2382 1 20694 20694 3.8459 1.3474 1 4029800 56588 5274 37891 38745 65860 65860 0.03499006657602877 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.81982421875 2 561.818941 1121.62333 1.087 0.00061068 0.38697 0.00021741 1.4739 0.00082809 561.8195509127181 65.229 0.96774 65.23 64.656 65.624 1.5259E-05 131 46 4 0 0 0 0.01958 3 35704 35704;35815;35927 71.134 42.052 1 28711000 56589 3566 37892 38746 65861;65862;65863 65861 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 561.8187255859375 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 78.234 1 72.058 71.558 72.558 -6.1757 0 0 0 0.45218 1 51200 51200 24.021 6.9077 1 56590 3566 37892 38746 65864 65864 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 561.819580078125 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 78.497 1 72.322 71.822 72.822 -6.1757 0 0 0 0.348 1 51383 51383 30.637 13.524 1 56591 3566 37892 38746 65865 65865 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 561.8186645507812 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 78.722 1 72.546 72.046 73.046 -6.1757 0 0 0 0.12101 1 51548 51548 52.268 29.532 1 56592 3566 37892 38746 65866 65866 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 561.8186645507812 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 78.899 1 72.723 72.223 73.223 -6.1757 0 0 0 0.08368 1 51678 51678 61.357 32.276 1 56593 3566 37892 38746 65867 65867 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 561.819580078125 2 561.818941 1121.62333 NaN NaN NaN NaN NaN NaN NaN 79.08 1 72.904 72.404 73.404 -6.1757 0 0 0 0.23566 1 51807 51807 37.974 17.52 1 56594 3566 37892 38746 65868 65868 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.2720947265625 2 561.818941 1121.62333 1.0128 0.00056902 -0.5905 -0.00033175 0.42233 0.00023727 561.8187303425923 77.985 0.39754 71.809 71.537 71.935 -6.1757 37 22 2 0 0 0 0.020399 1 50989 50989 61.357 39.611 1 13953000 56595 3566 37892 38746 65869 65869 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.2718505859375 2 561.818941 1121.62333 0.98982 0.0005561 -0.2288 -0.00012854 0.76102 0.00042756 561.8187124690185 77.712 0.17435 71.536 71.392 71.566 -6.1757 14 9 2 0 0 0 0.10661 1 50857 50857 37.974 15.238 1 11098000 56596 3566 37892 38746 65870 65870 0.06738308748322197 RYPAIIYNI 9 Unmodified _RYPAIIYNI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 561.818941 1121.62333 0.23313 0.00013098 1.4714 0.00082665 1.7045 0.00095763 561.8198884492634 65.757 0.45888 65.273 65.081 65.54 -0.48428 0.021853 0.0010738 NaN 71.134 34 19 2 NaN NaN NaN NaN 0 NaN NaN 0 3529400 56597 3566 37892 38746 0.06738308748322197 RYPALFPVL 9 Unmodified _RYPALFPVL_ 0 0 0 nc|ENSG00000101236|Q9Y225-2|RNF24 nc|ENSG00000101236|Q9Y225-2|RNF24 nc|ENSG00000101236|Q9Y225-2|RNF24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3189697265625 2 538.318577 1074.6226 0.72227 0.00038881 0.7641 0.00041133 1.4864 0.00080014 538.3186445958585 99.175 0.17305 92.999 92.908 93.081 -6.1757 26 9 4 0 0 0 0.013472 1 65970 65970 70.716 38.41 1 72192000 56598 16090 37893 38747 65871 65871 0.08827514099289147 RYPAVHAA 8 Unmodified _RYPAVHAA_ 0 0 0 REV__ENST00000589653.5_2_19:38308186-38310208:+|nuORF REV__ENST00000589653.5_2_19:38308186-38310208:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7402648925781 2 442.740494 883.466435 0.76906 0.00034049 -0.69252 -0.00030661 0.076536 3.3886E-05 442.7400172294715 49.883 0.23743 49.491 49.412 49.65 -0.3923 21 11 2 0 0 0 0.64035 1 26844 26844 22.453 3.0136 1 4052300 + 56599 29141 37894 38748 65872 65872 0.020040686486481718 RYPAVHAA 8 Unmodified _RYPAVHAA_ 0 0 0 REV__ENST00000589653.5_2_19:38308186-38310208:+|nuORF REV__ENST00000589653.5_2_19:38308186-38310208:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 442.740494 883.466435 0.76906 0.00034049 -0.69252 -0.00030661 0.076536 3.3886E-05 442.7400172294715 49.883 0.23743 49.491 49.412 49.65 -0.3923 -0.014719 7.5228E-05 NaN 22.453 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4052300 + 56600 29141 37894 38748 0.020040686486481718 RYPCFFNTL 9 Carbamidomethyl (C) _RYPC(Carbamidomethyl (C))FFNTL_ RYPC(1)FFNTL RYPC(71)FFNTL 0 1 0 ENST00000535245.1_1_12:121017538-121019044:-|nuORF;ENSG00000167272|ENST00000357500|POP5;ENST00000542776.5_1_12:121017123-121019113:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.293701171875 2 609.292233 1216.56991 0.71158 0.00043356 -0.0022595 -1.3767E-06 0.70932 0.00043218 609.2925362446504 69.031 0.47433 69.062 68.799 69.273 0.030914 73 22 4 0 0 0 0.013323 2 37948 37846;37948 71.134 44.865 1 9840300 56601 7595 37895 38749 65873;65874 65874 733 -0.029708120258419513 RYPCFFNTL 9 Carbamidomethyl (C) _RYPC(Carbamidomethyl (C))FFNTL_ RYPC(1)FFNTL RYPC(96)FFNTL 0 1 0 ENST00000535245.1_1_12:121017538-121019044:-|nuORF;ENSG00000167272|ENST00000357500|POP5;ENST00000542776.5_1_12:121017123-121019113:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF ENST00000535245.1_1_12:121017538-121019044:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.293212890625 2 609.292233 1216.56991 -0.07036 -4.287E-05 0.35242 0.00021473 0.28206 0.00017186 609.292607518 85.22 0.32179 79.044 78.785 79.107 -6.1757 30 19 2 0 0 0 0.0082485 2 56118 55983;56118 96.285 50.585 1 19989000 56602 7595 37895 38749 65875;65876 65876 733 -0.029708120258419513 RYPDHSVDR 9 Unmodified _RYPDHSVDR_ 0 0 0 nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB nc|ENSG00000160633|Q15424-2|SAFB nc|ENSG00000160633|Q15424-2|SAFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.1898498535156 3 382.187983 1143.54212 -0.066081 -2.5255E-05 2.9956 0.0011449 2.9295 0.0011196 382.1896548576388 37.629 0.3188 37.358 37.206 37.525 -0.27133 31 13 3 0 0 0 0.2546 1 19802 19802 19.362 4.5237 1 3006000 56603 6739 37896 38750 65877 65877 -0.023909989617322935 RYPDHSVDR 9 Unmodified _RYPDHSVDR_ 0 0 0 nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB nc|ENSG00000160633|Q15424-2|SAFB nc|ENSG00000160633|Q15424-2|SAFB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 382.187983 1143.54212 0.0095151 3.6366E-06 2.2747 0.00086935 2.2842 0.00087298 382.5233841466788 37.354 0.22015 37.354 37.238 37.458 0 0.12646 -0.0012206 NaN 19.362 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2150200 56604 6739 37896 38750 -0.023909989617322935 RYPDNLKHL 9 Unmodified _RYPDNLKHL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8807678222656 3 385.88049 1154.61964 -0.44438 -0.00017148 -0.48729 -0.00018804 -0.93167 -0.00035951 385.8803030683103 24.896 0.30536 24.896 24.697 25.003 0 94 28 5 0 0 0 0.011739 2 12686 12686;12780 75.571 48.347 1 57180000 56605 4532 37897 38751 65878;65879 65878 0.04851638974469097 RYPDNLKHL 9 Unmodified _RYPDNLKHL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8807678222656 3 385.88049 1154.61964 0.21924 8.4602E-05 -0.10273 -3.9643E-05 0.11651 4.4959E-05 385.88047995189925 25.146 0.20819 25.129 24.999 25.207 -0.017006 26 8 4 0 0 0 0.030212 1 12845 12845 55.235 38.669 1 44514000 56606 4532 37897 38751 65880 65880 0.04851638974469097 RYPDNLKHL 9 Unmodified _RYPDNLKHL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8800964355469 3 385.88049 1154.61964 0.14075 5.4313E-05 -0.095205 -3.6738E-05 0.045546 1.7575E-05 385.88049316399434 24.784 0.21944 24.809 24.688 24.907 0.024427 21 9 3 0 0 0 0.01861 1 12773 12773 64.927 43.337 1 7408100 56607 4532 37897 38751 65881 65881 0.04851638974469097 RYPDNLKHL 9 Unmodified _RYPDNLKHL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8805847167969 3 385.88049 1154.61964 0.83681 0.00032291 -0.26767 -0.00010329 0.56914 0.00021962 385.8803017105397 27.576 0.56296 24.54 24.28 24.843 -3.0365 108 28 5 0 0 0 0.0083595 2 15175 15175;15286 97.741 70.518 1 670290000 56608 4532 37897 38751 65882;65883 65882 0.04851638974469097 RYPDNLKHL 9 Unmodified _RYPDNLKHL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3165893554688 2 578.317097 1154.61964 0.46618 0.0002696 -0.95725 -0.00055359 -0.49107 -0.00028399 578.3165064600619 27.584 0.42874 24.548 24.356 24.785 -3.0365 50 21 3 0 0 0 0.014763 1 15231 15231 83.429 83.429 1 27349000 56609 4532 37897 38751 65884 65884 0.04851638974469097 RYPDNLKHLY 10 Unmodified _RYPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2355346679688 3 440.234933 1317.68297 -1.0628 -0.00046789 0.22895 0.00010079 -0.83388 -0.0003671 440.56959144459375 32.377 0.17106 32.377 32.261 32.432 0 19 8 3 0 0 0 0.22922 1 16888 16888 31.636 25.401 1 7219100 56610 4532 37898 38752 65885 65885 0.0368357969173303 RYPDNLKHLY 10 Unmodified _RYPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2352600097656 3 440.234933 1317.68297 -0.16693 -7.3488E-05 0.33179 0.00014607 0.16486 7.2579E-05 440.23506879073983 32.385 0.37403 32.256 32.042 32.416 -0.12915 48 15 4 0 0 0 0.02847 2 16815 16815;16919 68.76 48.773 1 31059000 56611 4532 37898 38752 65886;65887 65886 0.0368357969173303 RYPDNLKHLY 10 Unmodified _RYPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2354125976562 3 440.234933 1317.68297 0.82819 0.0003646 0.053793 2.3682E-05 0.88199 0.00038828 440.23498228221905 36.238 0.46338 32.045 31.77 32.234 -4.1928 102 27 5 0 0 0 0.02847 3 21131 21007;21131;21259 68.76 48.773 1 203640000 56612 4532 37898 38752 65888;65889;65890 65889 0.0368357969173303 RYPDNLKHLY 10 Unmodified _RYPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.3512573242188 2 659.848761 1317.68297 0.42592 0.00028104 0.19651 0.00012967 0.62243 0.00041071 660.350411360193 36.246 0.24828 32.053 31.87 32.118 -4.1928 23 14 2 0 0 0 0.014262 1 21112 21112 103.42 45.697 1 12264000 56613 4532 37898 38752 65891 65891 0.0368357969173303 RYPDNLKHLY 10 Unmodified _RYPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2352600097656 3 440.234933 1317.68297 0.98277 0.00043265 -0.54421 -0.00023958 0.43855 0.00019307 440.2344873702234 52.526 0.16724 46.792 46.707 46.874 -5.7345 12 8 2 0 0 0 0.016771 1 33174 33174 78.61 55.595 1 33148000 56614 4532 37898 38752 65892 65892 0.0368357969173303 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.9294128417969 3 477.929621 1430.76703 0.17388 8.3101E-05 -0.26017 -0.00012434 -0.086295 -4.1243E-05 477.9295193074239 45.663 0.26499 45.339 45.195 45.46 -0.32425 45 14 4 0 0 0 0.014324 1 24367 24367 52.193 43.441 1 89067000 56615 4532 37899 38753 65893 65893 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2648620605469 3 477.929621 1430.76703 0.065753 3.1426E-05 0.24875 0.00011889 0.3145 0.00015031 477.9297148712137 45.415 0.3959 45.387 45.226 45.622 -0.028011 67 20 5 0 0 0 0.018218 2 24351 24351;24454 42.862 34.11 1 363190000 56616 4532 37899 38753 65894;65895 65894 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.698974609375 4 358.699035 1430.76703 -0.029276 -1.0501E-05 0.50113 0.00017976 0.47186 0.00016925 358.69898041729556 45.418 0.17081 45.39 45.302 45.473 -0.028011 12 8 2 0 0 0 0.66428 1 24400 24400 9.2438 7.9141 1 13914000 56617 4532 37899 38753 65896 65896 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 716.3902587890625 2 716.390793 1430.76703 NaN NaN NaN NaN NaN NaN NaN 45.471 1 45.443 44.943 45.943 -0.028011 0 0 0 0.40236 1 24430 24430 28.234 20.078 1 56618 4532 37899 38753 65897 65897 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.9507446289062 4 358.699035 1430.76703 1.8105 0.00064942 0.18712 6.7121E-05 1.9976 0.00071654 358.9498758475292 50.275 0.34887 44.736 44.565 44.914 -5.5391 46 22 3 0 0 0 0.13335 1 31507 31507 37.251 33.405 1 27831000 56619 4532 37899 38753 65898 65898 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2648010253906 3 477.929621 1430.76703 1.1716 0.00055992 2.7282 0.0013039 3.8997 0.0018638 478.26644457490875 50.183 0.70501 44.644 44.266 44.971 -5.5391 116 45 4 0 0 0 0.047268 1 31529 31529 36.955 32.549 1 137070000 56620 4532 37899 38753 65899 65899 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.9299011230469 3 477.929621 1430.76703 0.79102 0.00037805 0.25693 0.00012279 1.0479 0.00050084 477.9296167530056 80.692 1.2875 74.517 73.96 75.247 -6.1757 283 73 6 0 0 0 0.004841 6 53010 52767;52894;53010;53133;53265;53404 55.839 48.361 1 405000000 56621 4532 37899 38753 65900;65901;65902;65903;65904;65905 65902 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.6993408203125 4 358.699035 1430.76703 1.3921 0.00049936 -0.2588 -9.2832E-05 1.1333 0.00040652 358.69904782360334 80.685 0.7932 74.509 74.186 74.98 -6.1757 119 43 4 0 0 0 0.11513 3 52810 52810;52928;53124 28.271 22.402 1 57868000 56622 4532 37899 38753 65906;65907;65908 65906 0.06888110788622726 RYPDNLKHLYL 11 Unmodified _RYPDNLKHLYL_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59 ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 716.3922119140625 2 716.390793 1430.76703 0.48804 0.00034962 0.35242 0.00025247 0.84045 0.00060209 716.3914500749152 80.708 0.54875 74.533 74.278 74.827 -6.1757 52 29 2 0 0 0 3.4633E-06 2 53003 52885;53003 98.73 64.727 1 18482000 56623 4532 37899 38753 65909;65910 65910 0.06888110788622726 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.892578125 3 382.892507 1145.65569 0.44629 0.00017088 0.19378 7.4195E-05 0.64007 0.00024508 382.89243433075904 49.595 0.338 49.595 49.416 49.754 0 33 14 3 0 0 0 0.06294 1 27282 27282 38.615 23.658 1 6932400 56624 6041 37900 38754 65911 65911 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8351440429688 2 573.835123 1145.65569 0.78065 0.00044796 -0.17301 -9.9276E-05 0.60764 0.00034869 573.8349854293782 49.618 0.25121 49.618 49.465 49.716 0 20 10 3 0 0 0 0.32235 1 27325 27325 16.149 3.1066 1 5521900 56625 6041 37900 38754 65912 65912 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8934020996094 3 382.892507 1145.65569 0.81963 0.00031383 -0.71383 -0.00027332 0.1058 4.0511E-05 382.892249534625 49.895 0.6729 49.503 49.258 49.931 -0.3923 117 33 5 0 0 0 0.039985 3 26762 26762;26871;26977 45.74 30.783 1 508260000 56626 6041 37900 38754 65913;65914;65915 65913 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.836181640625 2 573.835123 1145.65569 0.97008 0.00055666 -0.78797 -0.00045216 0.18211 0.0001045 573.8346363919285 49.92 0.53463 49.528 49.296 49.83 -0.3923 98 26 5 0 0 0 0.040683 3 26769 26769;26872;26978 49.554 17.722 1 282530000 56627 6041 37900 38754 65916;65917;65918 65916 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8929443359375 3 382.892507 1145.65569 0.77707 0.00029754 -1.1351 -0.00043463 -0.35805 -0.00013709 382.8920725159218 49.55 0.89903 49.502 49.27 50.169 -0.048824 126 44 5 0 0 0 0.013041 2 26687 26687;26786 57.249 26.546 1 498150000 56628 6041 37900 38754 65919;65920 65919 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8345947265625 2 573.835123 1145.65569 0.86638 0.00049716 -1.2364 -0.00070947 -0.36998 -0.00021231 573.8343683524273 49.551 0.63667 49.502 49.27 49.907 -0.048824 109 31 5 0 0 0 0.021948 3 26691 26691;26797;26902 61.602 29.296 1 341310000 56629 6041 37900 38754 65921;65922;65923 65921 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8353881835938 2 573.835123 1145.65569 0.82206 0.00047173 -0.29233 -0.00016775 0.52973 0.00030398 573.8349023380143 54.585 0.78047 48.72 48.419 49.199 -5.8653 183 48 5 0 0 0 0.025842 3 34626 34483;34626;34895 57.722 25.416 1 1881499999.9999998 56630 6041 37900 38754 65924;65925;65926 65925 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.892822265625 3 382.892507 1145.65569 1.1855 0.00045393 -0.08832 -3.3817E-05 1.0972 0.00042011 382.89243111879114 54.608 0.81208 48.742 48.401 49.213 -5.8653 196 50 5 0 0 0 0.047788 4 34636 34498;34636;34776;34906 38.615 23.658 1 1393500000 56631 6041 37900 38754 65927;65928;65929;65930 65928 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8934326171875 3 382.892507 1145.65569 0.98213 0.00037605 1.1201 0.00042886 2.1022 0.00080491 383.2273796870636 66.601 0.40152 60.425 60.156 60.558 -6.1757 33 22 2 0 0 0 0.10247 1 43289 43289 24.882 1.0918 1 12802000 56632 6041 37900 38754 65931 65931 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8345336914062 2 573.835123 1145.65569 0.76425 0.00043855 -0.48928 -0.00028077 0.27497 0.00015779 573.8346050131062 66.97 0.49124 60.794 60.58 61.071 -6.1757 66 27 3 0 0 0 0.032796 3 43627 43492;43627;43756 53.833 29.812 1 30935000 56633 6041 37900 38754 65932;65933;65934 65933 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8938598632812 3 382.892507 1145.65569 1.1191 0.00042849 0.39921 0.00015285 1.5183 0.00058134 382.8926796678305 67.509 0.92763 61.333 60.872 61.799 -6.1757 105 52 3 0 0 0 0.013041 5 44175 43781;43909;44045;44175;44322 57.249 26.546 1 40562000 56634 6041 37900 38754 65935;65936;65937;65938;65939 65938 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.835693359375 2 573.835123 1145.65569 0.88347 0.00050697 -0.086056 -4.9382E-05 0.79741 0.00045758 573.8350583357926 69.263 3.4407 63.087 61.02 64.461 -6.1757 400 195 3 0 0 0 0.010301 15 44151 43882;44017;44151;44293;44433;44571;44836;44960;45078;45200;45324;45447;45570;45687;45940 79.596 48.96 1 158230000 56635 6041 37900 38754 65940;65941;65942;65943;65944;65945;65946;65947;65948;65949;65950;65951;65952;65953;65954 65942 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8929748535156 3 382.892507 1145.65569 1.2925 0.00049488 0.21108 8.0819E-05 1.5036 0.0005757 382.89260717408433 69.37 2.7149 63.194 61.799 64.514 -6.1757 227 153 2 0 0 0 0.009483 12 45700 44459;44589;44718;44842;44962;45087;45213;45459;45582;45700;45834;45970 65.474 28.967 1 110490000 56636 6041 37900 38754 65955;65956;65957;65958;65959;65960;65961;65962;65963;65964;65965;65966 65964 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MSMS AL20221201_MKP_PDAC_01 4 382.8932495117188 3 382.892507 1145.65569 NaN NaN NaN NaN NaN NaN NaN 67.046 1 60.87 60.37 61.37 -6.1757 0 0 0 0.16996 1 43653 43653 32.037 14.989 1 56637 6041 37900 38754 65967 65967 0.08869096151329359 RYPDRITLI 9 Unmodified _RYPDRITLI_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENST00000567040.5_1_16:30087698-30094972:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MSMS AL20221201_MKP_PDAC_01 4 573.8359375 2 573.835123 1145.65569 NaN NaN NaN NaN NaN NaN NaN 70.692 1 64.517 64.017 65.017 -6.1757 0 0 0 0.49196 1 46206 46206 16.149 1.3108 1 56638 6041 37900 38754 65968 65968 0.08869096151329359 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1923217773438 3 388.192845 1161.55671 0.00043138 1.6746E-07 -0.41614 -0.00016154 -0.41571 -0.00016138 388.1926804226483 37.384 0.48759 37.384 37.117 37.604 0 82 25 4 0 0 0 0.06294 2 19790 19790;19907 32.037 27.509 1 42563000 56639 5098 37901 38755 65969;65970 65969 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7840576171875 2 581.78563 1161.55671 0.15885 9.2415E-05 -1.7121 -0.0009961 -1.5533 -0.00090368 581.7846962322993 37.402 0.52804 37.402 37.097 37.625 0 90 27 4 0 0 0 0.15471 2 19823 19823;19941 27.629 15.097 1 37013000 56640 5098 37901 38755 65971;65972 65971 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7857055664062 2 581.78563 1161.55671 -0.089729 -5.2203E-05 -0.10681 -6.2138E-05 -0.19654 -0.00011434 581.7855410686225 37.662 0.52415 37.39 37.114 37.638 -0.27133 80 23 4 0 0 0 0.014417 3 19795 19693;19795;19904 69.105 54.267 1 53713000 56641 5098 37901 38755 65973;65974;65975 65974 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1929321289062 3 388.192845 1161.55671 -0.043619 -1.6933E-05 0.23488 9.1178E-05 0.19126 7.4245E-05 388.19288099799735 37.668 0.56772 37.396 37.092 37.66 -0.27133 91 25 5 0 0 0 0.032796 3 19705 19705;19809;19914 42.312 30.138 1 61426000 56642 5098 37901 38755 65976;65977;65978 65976 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7861328125 2 581.78563 1161.55671 0.35014 0.00020371 0.2249 0.00013084 0.57504 0.00033455 581.7860768214971 37.327 0.40668 37.348 37.13 37.537 0.021545 28 18 2 0 0 0 0.094149 1 19776 19776 34.402 27.679 1 2658500 56643 5098 37901 38755 65979 65979 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1933898925781 3 388.192845 1161.55671 -0.22417 -8.7021E-05 1.0799 0.00041919 0.85568 0.00033217 388.1933414379891 37.297 0.41275 37.318 37.089 37.502 0.021545 49 18 4 0 0 0 0.21643 1 19793 19793 15.739 11.21 1 3827200 56644 5098 37901 38755 65980 65980 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.1934814453125 3 388.192845 1161.55671 1.1408 0.00044286 0.74712 0.00029003 1.8879 0.00073289 388.1930305924822 41.558 0.86495 36.95 36.547 37.412 -4.6079 224 55 6 0 0 0 0.11784 4 24870 24735;24870;25009;25139 23.801 18.398 1 427270000 56645 5098 37901 38755 65981;65982;65983;65984 65982 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7861938476562 2 581.78563 1161.55671 0.67326 0.00039169 -0.16766 -9.7543E-05 0.5056 0.00029415 581.7856004193402 41.546 0.69375 36.938 36.583 37.277 -4.6079 161 45 4 0 0 0 0.011671 4 25031 24767;24894;25031;25175 75.761 57.388 1 300480000 56646 5098 37901 38755 65985;65986;65987;65988 65987 -0.017609268135856837 RYPDSHQLF 9 Unmodified _RYPDSHQLF_ 0 0 0 nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 nc|ENSG00000138757|Q9UN86-2|G3BP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 581.78563 1161.55671 0.2619 0.00015237 1.5906 0.00092537 1.8525 0.0010777 581.7865588225843 36.92 0.12606 36.941 36.858 36.984 0.021545 0.0015117 0.001841 NaN 75.761 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 637040 56647 5098 37901 38755 -0.017609268135856837 RYPDTIALTF 10 Unmodified _RYPDTIALTF_ 0 0 0 ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;nc|ENSG00000137802|O60336-2|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF ENSG00000137802|ENST00000457542|MAPKBP1 ENSG00000137802|ENST00000457542|MAPKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8179931640625 2 598.819138 1195.62372 0.18888 0.00011311 -3.3225 -0.0019896 -3.1336 -0.0018764 598.818934364109 70.346 0.31779 69.867 69.653 69.971 -0.47903 51 14 5 0 0 0 0.1605 2 38425 38425;38531 37.075 15.538 1 7574500 56648 4968 37902 38756 65989;65990 65989 0.03373683677500594 RYPECGNLLL 10 Carbamidomethyl (C) _RYPEC(Carbamidomethyl (C))GNLLL_ RYPEC(1)GNLLL RYPEC(53)GNLLL 0 1 0 ENSG00000178078|ENST00000594605|STAP2;nc|ENSG00000178078|Q9UGK3-2|STAP2 ENSG00000178078|ENST00000594605|STAP2 ENSG00000178078|ENST00000594605|STAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.8164672851562 2 617.816073 1233.61759 0.41578 0.00025688 -0.4927 -0.0003044 -0.076923 -4.7524E-05 617.8162377523637 61.956 0.65867 55.78 55.464 56.122 -6.1757 102 36 4 0 0 0 0.06987 3 40040 39788;39911;40040 53.404 31.154 1 124500000 56649 8729 37903 38757 65991;65992;65993 65993 832 0.010128421743502258 RYPEETLSL 9 Unmodified _RYPEETLSL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2876586914062 2 554.287671 1106.56079 0.82265 0.00045599 1.4806 0.00082067 2.3032 0.0012767 554.2887631866279 49.405 0.20221 49.405 49.333 49.536 0 11 8 2 0 0 0 0.13231 1 27212 27212 29.841 2.2118 1 2175400 56650 10766 37904 38758 65994 65994 0.011771178894832701 RYPEGIKWKF 10 Unmodified _RYPEGIKWKF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.91162109375 3 441.91179 1322.71354 1.2431 0.00054932 -0.78769 -0.00034809 0.45537 0.00020123 441.9114594898641 46.343 0.3082 46.309 46.183 46.491 -0.033421 32 14 3 0 0 0 0.24511 1 24928 24928 32.616 26.833 1 3231100 56651 10191 37905 38759 65995 65995 0.06509358076732497 RYPEGIKWKF 10 Unmodified _RYPEGIKWKF_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.9127807617188 3 441.91179 1322.71354 0.60919 0.00026921 -0.65531 -0.00028959 -0.046123 -2.0382E-05 441.9117081357436 82.491 0.31409 76.315 76.106 76.42 -6.1757 23 17 2 0 0 0 0.052718 1 54246 54246 57.204 36.793 1 6768000 56652 10191 37905 38759 65996 65996 0.06509358076732497 RYPEIKEEL 9 Unmodified _RYPEIKEEL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8805847167969 3 392.880156 1175.61864 0.32523 0.00012778 0.27509 0.00010808 0.60032 0.00023586 392.88026362898097 36.904 0.71124 36.904 36.527 37.238 0 123 34 4 0 0 0 0.010301 4 19444 19444;19545;19650;19755 64.927 45.301 1 38661000 56653 2778 37906 38760 65997;65998;65999;66000 65997 0.037853798148944406 RYPEIKEEL 9 Unmodified _RYPEIKEEL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8163452148438 2 588.816596 1175.61864 0.35149 0.00020696 -0.025612 -1.5081E-05 0.32588 0.00019188 588.8165737638463 36.91 0.73042 36.91 36.547 37.277 0 131 35 5 0 0 0 0.0039711 4 19453 19453;19558;19663;19766 121.53 69.904 1 69174000 56654 2778 37906 38760 66001;66002;66003;66004 66001 0.037853798148944406 RYPEIKEEL 9 Unmodified _RYPEIKEEL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8173828125 2 588.816596 1175.61864 0.90849 0.00053493 -0.21107 -0.00012428 0.69742 0.00041065 588.8163744381516 41.574 0.61292 36.966 36.624 37.237 -4.6079 131 39 4 0 0 0 0.0033237 4 25185 24794;24920;25054;25185 124.95 64.879 1 138580000 56655 2778 37906 38760 66005;66006;66007;66008 66008 0.037853798148944406 RYPEIKEEL 9 Unmodified _RYPEIKEEL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8811645507812 3 392.880156 1175.61864 1.2471 0.00048996 0.22674 8.9081E-05 1.4738 0.00057904 392.8802286512909 41.595 0.57821 36.987 36.624 37.202 -4.6079 104 37 4 0 0 0 0.0087923 3 24818 24818;24951;25092 85.764 62.989 1 106190000 56656 2778 37906 38760 66009;66010;66011 66009 0.037853798148944406 RYPERITIL 9 Unmodified _RYPERITIL_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5646362304688 3 387.564391 1159.67134 0.62271 0.00024134 0.13228 5.1268E-05 0.755 0.00029261 387.56439136219063 47.708 0.27183 47.355 47.203 47.474 -0.3526 32 12 3 0 0 0 0.076472 1 25546 25546 38.615 15.957 1 8678600 56657 2224 37907 38761 66012 66012 0.09789382668373037 RYPERITIL 9 Unmodified _RYPERITIL_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.8428955078125 2 580.842948 1159.67134 0.60475 0.00035126 0.19901 0.00011559 0.80375 0.00046686 580.8430135100914 47.693 0.29319 47.34 47.203 47.496 -0.3526 35 13 3 0 0 0 0.026499 1 25551 25551 45.7 18.816 1 13923000 56658 2224 37907 38761 66013 66013 0.09789382668373037 RYPERITIL 9 Unmodified _RYPERITIL_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8433837890625 2 580.842948 1159.67134 1.1615 0.00067466 0.16095 9.3485E-05 1.3225 0.00076814 580.8431385987572 47.437 0.32334 47.398 47.216 47.54 -0.038643 34 14 3 0 0 0 0.11005 1 25518 25518 27.629 7.1752 1 7213000 56659 2224 37907 38761 66014 66014 0.09789382668373037 RYPERITIL 9 Unmodified _RYPERITIL_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3450317382812 2 580.842948 1159.67134 0.75979 0.00044132 -0.17193 -9.9866E-05 0.58785 0.00034145 580.8428647178301 52.433 0.3364 46.699 46.499 46.836 -5.7345 30 18 2 0 0 0 0.012586 2 33038 33038;33153 70.332 28.492 1 39927000 56660 2224 37907 38761 66015;66016 66015 0.09789382668373037 RYPEVNRRI 9 Unmodified _RYPEVNRRI_ 0 0 0 nc|ENSG00000204209|Q9UER7-2|DAXX;DAXX|p.P280Lfs*14|1|0.55|ENSG00000204209|chr6:33320938-33320938|C/-|frameshift_variant;nc|ENSG00000204209|Q9UER7-3|DAXX;nc|ENSG00000204209|Q9UER7-5|DAXX;nc|ENSG00000204209|Q9UER7-4|DAXX;ENSG00000204209|ENST00000374542|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX nc|ENSG00000204209|Q9UER7-2|DAXX MSMS AL20221201_MKP_PDAC_01 4 401.562744140625 3 401.563273 1201.66799 NaN NaN NaN NaN NaN NaN NaN 23.371 1 20.593 20.093 21.093 -2.7784 0 0 0 0.83104 1 12648 12648 3.8763 1.1411 1 56661 16504 37908 38762 66017 66017 0.07522132614371912 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.778076171875 2 543.777608 1085.54066 -0.45824 -0.00024918 1.5155 0.0008241 1.0573 0.00057492 543.7781334320557 34.593 0.23672 34.593 34.478 34.714 0 17 11 2 0 0 0 0.1773 1 18266 18266 25.399 8.457 1 1614900 56662 10329 37909 38763 66018 66018 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7777099609375 2 543.777608 1085.54066 -0.51803 -0.00028169 0.91328 0.00049662 0.39525 0.00021493 543.7779774596206 34.783 0.48997 34.591 34.393 34.883 -0.19131 57 21 5 0 0 0 0.019303 2 18235 18132;18235 64.236 46.101 1 44735000 56663 10329 37909 38763 66019;66020 66020 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8543395996094 3 362.854164 1085.54066 -0.31157 -0.00011305 0.67007 0.00024314 0.3585 0.00013008 362.8543781404652 34.765 0.28197 34.574 34.44 34.722 -0.19131 30 12 3 0 0 0 0.32871 1 18174 18174 20.415 8.9198 1 16831000 56664 10329 37909 38763 66021 66021 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.77734375 2 543.777608 1085.54066 0.097206 5.2859E-05 0.59431 0.00032317 0.69152 0.00037603 543.777769542912 34.577 0.34547 34.604 34.367 34.713 0.027401 45 15 4 0 0 0 0.013323 2 18173 18173;18284 71.134 49.387 1 13236000 56665 10329 37909 38763 66022;66023 66022 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8539123535156 3 362.854164 1085.54066 0.019879 7.2132E-06 0.51125 0.00018551 0.53113 0.00019272 362.8542064073999 34.539 0.29715 34.566 34.416 34.713 0.027401 34 13 4 0 0 0 0.32871 1 18194 18194 15.248 10.351 1 4560700 56666 10329 37909 38763 66024 66024 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.778076171875 2 543.777608 1085.54066 0.33716 0.00018334 0.46173 0.00025108 0.7989 0.00043442 543.7778652853427 38.512 0.54618 34.143 33.87 34.416 -4.3689 109 34 4 0 0 0 0.022193 2 22621 22621;22757 61.357 43.222 1 191400000 56667 10329 37909 38763 66025;66026 66025 0.001314117401761905 RYPGHVPNF 9 Unmodified _RYPGHVPNF_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.8739929199219 3 362.854164 1085.54066 1.1189 0.00040599 0.50227 0.00018225 1.6211 0.00058824 362.8543445104314 38.499 0.50966 34.13 33.87 34.379 -4.3689 102 32 4 0 0 0 0.21021 1 22893 22893 7.609 2.5614 1 139040000 56668 10329 37909 38763 66027 66027 0.001314117401761905 RYPGHVPNFL 10 Unmodified _RYPGHVPNFL_ 0 0 0 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 ENSG00000204839|ENST00000398882|MROH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2333374023438 3 400.548852 1198.62473 0.15437 6.1832E-05 1.3943 0.0005585 1.5487 0.00062033 400.88313720630424 49.093 0.30779 49.05 48.887 49.195 -0.043694 24 14 3 0 0 0 0.23279 1 26525 26525 12.175 5.5444 1 1309900 56669 10329 37910 38764 66028 66028 0.033359428370886235 RYPHFKTKI 9 Unmodified _RYPHFKTKI_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1;ENST00000467015.1_1_1:226016586-226019776:+|nuORF ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2328186035156 3 397.232864 1188.67676 -0.015387 -6.1122E-06 -0.53409 -0.00021216 -0.54948 -0.00021827 397.2328027427525 21.402 0.28939 21.415 21.233 21.523 0.013796 71 49 3 0 0 0 0.053952 2 10957 10861;10957 41.347 30.82 1 7057200 56670 5557 37911 38765 66029;66030 66030 0.08997106250831166 RYPHFKTKI 9 Unmodified _RYPHFKTKI_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1;ENST00000467015.1_1_1:226016586-226019776:+|nuORF ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2328186035156 3 397.232864 1188.67676 0.23434 9.3089E-05 -0.018533 -7.3619E-06 0.21581 8.5727E-05 397.2327453189162 25.011 0.35201 22.128 21.888 22.24 -2.8831 69 31 3 0 0 0 0.05483 1 13615 13615 47.732 35.491 1 25440000 56671 5557 37911 38765 66031 66031 0.08997106250831166 RYPHLLEQL 9 Unmodified _RYPHLLEQL_ 0 0 0 nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5553588867188 3 390.220624 1167.64004 0.67986 0.00026529 0.18069 7.051E-05 0.86055 0.0003358 390.22067921316346 50.799 0.48488 50.385 50.112 50.597 -0.41351 61 23 3 0 0 0 0.37578 2 27393 27288;27393 13.615 6.0059 1 5426500 56672 2713 37912 38766 66032;66033 66033 0.06292809634260266 RYPHLLEQL 9 Unmodified _RYPHLLEQL_ 0 0 0 nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8270874023438 2 584.827298 1167.64004 0.53353 0.00031202 0.71423 0.0004177 1.2478 0.00072973 584.8272131542268 50.829 0.40619 50.416 50.17 50.576 -0.41351 40 19 3 0 0 0 0.29507 1 27405 27405 18.146 3.3081 1 2767500 56673 2713 37912 38766 66034 66034 0.06292809634260266 RYPLLLMEL 9 Unmodified _RYPLLLMEL_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3314819335938 2 574.330827 1146.6471 1.184 0.00067999 -0.14564 -8.3645E-05 1.0383 0.00059635 574.3305515729788 91.627 0.43763 91.663 91.426 91.864 0.036499 28 15 2 0 0 0 0.076472 1 50971 50971 49.933 28.186 1 2717300 56674 2500 37913 38767 66035 66035 0.07964406190490081 RYPLLLMEL 9 Unmodified _RYPLLLMEL_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3313598632812 2 574.330827 1146.6471 1.414 0.00081208 -0.041866 -2.4045E-05 1.3721 0.00078804 574.3304627799316 100.09 0.19724 93.913 93.78 93.978 -6.1757 27 12 3 0 0 0 0.010301 1 66822 66822 88.904 52.859 1 69578000 56675 2500 37913 38767 66036 66036 0.07964406190490081 RYPLLLMEL 9 Oxidation (M) _RYPLLLM(Oxidation (M))EL_ RYPLLLM(1)EL RYPLLLM(44)EL 0 0 1 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MSMS AL20221201_MKP_PDAC_01 4 582.3263549804688 2 582.328285 1162.64202 NaN NaN NaN NaN NaN NaN NaN 97.128 1 90.952 90.452 91.452 -6.1757 0 0 0 0.098163 1 64370 64370 43.858 19.838 1 56676 2500 37913 38768 66037 66037 427 0.0672010232788125 RYPLLLQKI 9 Unmodified _RYPLLLQKI_ 0 0 0 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3657836914062 2 572.366059 1142.71756 0.59772 0.00034211 0.064426 3.6876E-05 0.66214 0.00037899 572.3660296256729 56.98 0.72012 56.912 56.517 57.237 -0.068737 90 35 3 0 0 0 0.0055767 4 31050 30843;30942;31050;31173 115.69 34.079 1 11571000 56677 9118 37914 38769 66038;66039;66040;66041 66040 0.15191447570464334 RYPLLLQKI 9 Unmodified _RYPLLLQKI_ 0 0 0 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.9129943847656 3 381.913131 1142.71756 0.52256 0.00019957 -0.28058 -0.00010716 0.24198 9.2414E-05 381.91312967454724 56.876 0.5587 56.807 56.517 57.075 -0.068737 45 27 2 0 0 0 0.05447 1 30867 30867 33.445 22.645 1 2393200 56678 9118 37914 38769 66042 66042 0.15191447570464334 RYPLLLQKI 9 Unmodified _RYPLLLQKI_ 0 0 0 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3671875 2 572.366059 1142.71756 1.3123 0.0007511 -0.40242 -0.00023033 0.90986 0.00052077 572.3660070539811 87.876 1.1072 81.701 81.203 82.311 -6.1757 87 61 2 0 0 0 0.00856 2 57883 57750;57883 100.37 7.5494 1 19987000 56679 9118 37914 38769 66043;66044 66044 0.15191447570464334 RYPLLLQKI 9 Unmodified _RYPLLLQKI_ 0 0 0 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 ENSG00000183111|ENST00000333677|ARHGEF37 MSMS AL20221201_MKP_PDAC_01 4 381.9136657714844 3 381.913131 1142.71756 NaN NaN NaN NaN NaN NaN NaN 87.799 1 81.623 81.123 82.123 -6.1757 0 0 0 0.15549 1 57908 57908 27.223 11.975 1 56680 9118 37914 38769 66045 66045 0.15191447570464334 RYPNKLDTI 9 Unmodified _RYPNKLDTI_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000513757.5_1_5:1479693-1494872:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3103637695312 2 560.31148 1118.60841 -0.43932 -0.00024616 -0.17379 -9.7378E-05 -0.61312 -0.00034354 560.3117482103183 30.159 0.22663 30.159 30.078 30.305 0 23 10 3 0 0 0 0.024882 1 15648 15648 58.679 35.943 1 3055200 56681 6262 37915 38770 66046 66046 0.05384816880314247 RYPNKLDTI 9 Unmodified _RYPNKLDTI_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000513757.5_1_5:1479693-1494872:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7660522460938 2 560.31148 1118.60841 0.8506 0.0004766 -1.014 -0.00056815 -0.16339 -9.1548E-05 560.3110694298463 30.17 0.12593 30.089 30.027 30.153 -0.080429 7 4 2 0 0 0 0.19758 1 15635 15635 13.042 5.1323 1 1370700 56682 6262 37915 38770 66047 66047 0.05384816880314247 RYPNKLDTITW 11 Unmodified _RYPNKLDTITW_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000513757.5_1_5:1479693-1494872:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.5860900878906 3 469.585743 1405.7354 0.86765 0.00040744 0.090283 4.2395E-05 0.95794 0.00044983 469.5856826689019 50.543 0.28279 50.489 50.325 50.608 -0.053871 23 13 2 0 0 0 0.37147 1 27332 27332 23.016 18.3 1 3290100 56683 6262 37916 38771 66048 66048 0.048761180346446054 RYPNLVLIL 9 Unmodified _RYPNLVLIL_ 0 0 0 nc|ENSG00000164168|Q9NVA4-2|TMEM184C;ENSG00000164168|ENST00000296582|TMEM184C nc|ENSG00000164168|Q9NVA4-2|TMEM184C nc|ENSG00000164168|Q9NVA4-2|TMEM184C MSMS AL20221201_MKP_PDAC_01 4 550.8453369140625 2 550.844959 1099.67537 NaN NaN NaN NaN NaN NaN NaN 99.375 1 93.199 92.699 93.699 -6.1757 0 0 0 0.17247 1 66161 66161 34.102 1.797 1 56684 7153 37917 38772 66049 66049 0.1295147216208079 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2072448730469 3 441.207266 1320.59997 -0.15773 -6.9594E-05 -0.13079 -5.7707E-05 -0.28853 -0.0001273 441.2071750578642 22.433 0.69966 22.455 22.142 22.841 0.022896 106 30 5 0 0 0 0.033218 4 11389 11288;11389;11486;11588 64.927 57.45 1 21483000 56685 3829 37918 38773 66050;66051;66052;66053 66051 -0.04750737036306418 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2073059082031 3 441.207266 1320.59997 0.43274 0.00019093 -0.36757 -0.00016217 0.065173 2.8755E-05 441.207098633622 22.312 0.46283 22.329 22.089 22.552 0.01749 65 20 4 0 0 0 0.051223 2 11461 11369;11461 49.742 38.224 1 9516300 56686 3829 37918 38773 66054;66055 66055 -0.04750737036306418 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2070617675781 3 441.207266 1320.59997 NaN NaN NaN NaN NaN NaN NaN 22.521 1 22.539 22.039 23.039 0.01749 0 0 0 0.24996 1 11568 11568 40.725 35.828 1 56687 3829 37918 38773 66056 66056 -0.04750737036306418 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.2070617675781 3 441.207266 1320.59997 0.18207 8.0332E-05 -0.243 -0.00010721 -0.060924 -2.688E-05 441.2071748441625 25.089 0.82697 22.206 21.835 22.662 -2.8831 223 63 4 0 0 0 0.038363 4 13656 13549;13656;13771;13891 62.869 62.869 1 212660000 56688 3829 37918 38773 66057;66058;66059;66060 66058 -0.04750737036306418 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.8096313476562 2 661.307261 1320.59997 -0.29808 -0.00019712 -0.4814 -0.00031835 -0.77947 -0.00051547 661.8081705160123 25.098 0.24288 22.215 22.163 22.406 -2.8831 41 26 2 0 0 0 0.30444 1 13806 13806 27.223 20.122 1 11841000 56689 3829 37918 38773 66061 66061 -0.04750737036306418 RYPNSHTHYF 10 Unmodified _RYPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 661.30615234375 2 661.307261 1320.59997 NaN NaN NaN NaN NaN NaN NaN 25.016 1 22.133 21.633 22.633 -2.8831 0 0 0 0.026837 1 13658 13658 87.258 66.805 1 56690 3829 37918 38773 66062 66062 -0.04750737036306418 RYPNSLPAL 9 Unmodified _RYPNSLPAL_ 0 0 0 ENSG00000135315|ENST00000403245|CEP162;nc|ENSG00000135315|Q5TB80-2|CEP162 ENSG00000135315|ENST00000403245|CEP162 ENSG00000135315|ENST00000403245|CEP162 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.788330078125 2 515.787641 1029.56073 0.4673 0.00024103 0.7513 0.00038751 1.2186 0.00062854 515.7879460798201 52.155 0.39721 51.721 51.512 51.909 -0.43367 42 19 3 0 0 0 0.03568 1 28130 28130 52.268 25.385 1 3340800 56691 4686 37919 38774 66063 66063 0.04713162680127425 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.3295288085938 2 618.330205 1234.64586 0.53806 0.0003327 -1.061 -0.00065607 -0.52297 -0.00032337 618.3289905117102 43.753 0.29697 43.737 43.483 43.78 -0.015667 18 13 2 0 0 0 0.12584 1 23457 23457 42.835 22.421 1 9633900 56692 1776 37920 38775 66064 66064 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.3307495117188 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 44.286 1 44.264 43.764 44.764 -0.022064 0 0 0 0.14312 1 23759 23759 47.732 21.464 1 56693 1776 37920 38775 66065 66065 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8320922851562 2 618.330205 1234.64586 0.78173 0.00048337 -0.11793 -7.292E-05 0.6638 0.00041045 618.3301830743746 49.247 0.74706 43.851 43.773 44.52 -5.3961 61 47 2 0 0 0 0.0014528 3 31019 30751;30876;31019 111.31 80.672 1 39126000 56694 1776 37920 38775 66066;66067;66068 66068 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5558776855469 3 412.555895 1234.64586 1.2207 0.00050363 -0.38873 -0.00016037 0.83202 0.00034325 412.55574455928036 49.699 1.2914 44.16 43.666 44.957 -5.5391 159 82 2 0 0 0 3.9043E-08 7 30776 30776;30897;31025;31165;31309;31450;31597 129.39 116.53 1 35940000 56695 1776 37920 38775 66069;66070;66071;66072;66073;66074;66075 66069 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20221201_MKP_PDAC_01 4 618.331298828125 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 48.69 1 43.294 42.794 43.794 -5.3961 0 0 0 0.043315 1 30353 30353 59.052 29.212 1 56696 1776 37920 38775 66076 66076 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20221201_MKP_PDAC_01 4 618.3309936523438 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 49.804 1 44.265 43.765 44.765 -5.5391 0 0 0 3.2025E-06 1 31157 31157 121.5 88.718 1 56697 1776 37920 38775 66077 66077 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20221201_MKP_PDAC_01 4 618.3292236328125 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 50.041 1 44.502 44.002 45.002 -5.5391 0 0 0 0.02843 1 31335 31335 62.869 36.6 1 56698 1776 37920 38775 66078 66078 0.03791908145922207 RYPPDIRATF 10 Unmodified _RYPPDIRATF_ 0 0 0 nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MSMS AL20221201_MKP_PDAC_01 4 618.3314819335938 2 618.330205 1234.64586 NaN NaN NaN NaN NaN NaN NaN 50.25 1 44.711 44.211 45.211 -5.5391 0 0 0 0.016301 1 31500 31500 73.196 50.538 1 56699 1776 37920 38775 66079 66079 0.03791908145922207 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.8092651367188 2 614.809105 1227.60366 0.68036 0.00041829 -0.011293 -6.943E-06 0.66907 0.00041135 615.3106383627537 28.174 0.86668 28.127 27.594 28.461 -0.046408 55 35 2 0 0 0 0.078417 4 14516 14300;14406;14516;14628 55.235 26.153 1 3134800 56700 2069 37921 38776 66080;66081;66082;66083 66082 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2078857421875 3 410.208495 1227.60366 0.59533 0.00024421 0.082512 3.3847E-05 0.67785 0.00027806 410.20824173933977 28.625 0.29925 28.563 28.345 28.644 -0.062159 16 11 2 0 0 0 0.5802 2 14804 14704;14804 12.175 8.2984 1 1391900 56701 2069 37921 38776 66084;66085 66085 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.808837890625 2 614.809105 1227.60366 0.71476 0.00043944 0.15244 9.3723E-05 0.8672 0.00053316 614.8094033278282 28.636 0.54776 28.574 28.418 28.966 -0.062159 34 22 2 0 0 0 0.1379 3 14740 14740;14846;14972 40.239 20.982 1 2811200 56702 2069 37921 38776 66086;66087;66088 66086 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8096923828125 2 614.809105 1227.60366 0.43756 0.00026901 0.31108 0.00019126 0.74864 0.00046027 614.8092425785851 28.186 1.8738 28.215 27.376 29.25 0.029564 194 78 3 0 0 0 0.00072403 10 14754 14248;14352;14449;14552;14648;14754;14857;14959;15067;15177 110.55 74.426 1 8836700 56703 2069 37921 38776 66089;66090;66091;66092;66093;66094;66095;66096;66097;66098 66094 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2093811035156 3 410.208495 1227.60366 0.03298 1.3528E-05 0.46336 0.00019007 0.49634 0.0002036 410.2087642442655 27.708 0.1573 27.738 27.641 27.799 0.029566 9 6 2 0 0 0 0.52659 1 14394 14394 14.957 9.1737 1 2402100 56704 2069 37921 38776 66099 66099 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2085876464844 3 410.208495 1227.60366 -0.049242 -2.02E-05 0.77917 0.00031962 0.72993 0.00029942 410.20870553945184 28.298 1.5239 28.328 27.775 29.299 0.029566 124 62 3 0 0 0 0.11654 7 14935 14497;14715;14816;14935;15039;15143;15252 43.982 31.749 1 4660500 56705 2069 37921 38776 66100;66101;66102;66103;66104;66105;66106 66103 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8092651367188 2 614.809105 1227.60366 0.83268 0.00051194 0.10694 6.5745E-05 0.93962 0.00057769 614.8090733037748 31.197 1.067 27.501 26.537 27.604 -3.6958 67 52 2 0 0 0 3.4918E-05 4 17581 17321;17464;17581;17694 139.78 90.599 1 40738000 56706 2069 37921 38776 66107;66108;66109;66110 66109 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.8095703125 2 614.809105 1227.60366 0.63792 0.0003922 -0.13215 -8.1247E-05 0.50577 0.00031095 614.8089700981275 31.507 1.5012 27.811 27.604 29.105 -3.6958 143 82 2 0 0 0 7.0463E-07 6 17938 17814;17938;18061;18190;18311;18558 163.69 113.75 1 43502000 56707 2069 37921 38776 66111;66112;66113;66114;66115;66116 66112 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.54345703125 3 410.208495 1227.60366 0.8625 0.0003538 0.74205 0.0003044 1.6046 0.0006582 410.20880223237947 31.663 1.3329 27.968 27.642 28.974 -3.6958 109 73 2 0 0 0 0.078417 2 17840 17840;17966 51.488 38.615 1 42012000 56708 2069 37921 38776 66117;66118 66117 -0.001040672624412764 RYPPKSGNYF 10 Unmodified _RYPPKSGNYF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MSMS AL20221201_MKP_PDAC_01 4 410.2083129882812 3 410.208495 1227.60366 NaN NaN NaN NaN NaN NaN NaN 31.297 1 27.601 27.101 28.101 -3.6958 0 0 0 0.097144 1 17714 17714 51.488 38.615 1 56709 2069 37921 38776 66119 66119 -0.001040672624412764 RYPPQRRWL 9 Unmodified _RYPPQRRWL_ 0 0 0 REV__ENST00000574957.1_1_16:3076230-3076290:+|nuORF REV__ENST00000574957.1_1_16:3076230-3076290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5742797851562 3 424.575513 1270.70471 NaN NaN NaN NaN NaN NaN NaN 54.631 1 54.564 54.064 55.064 -0.066936 0 0 0 0.82739 1 29673 29673 2.4985 0.75621 1 + 56710 19803 37922 38777 66120 66120 0.08018429230924085 RYPQAMNSFL 10 Unmodified _RYPQAMNSFL_ 0 0 0 ENST00000607166.1_1_10:31607104-31607347:-|nuORF ENST00000607166.1_1_10:31607104-31607347:-|nuORF ENST00000607166.1_1_10:31607104-31607347:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2080383300781 3 409.537736 1225.59138 0.61666 0.00025255 1.2315 0.00050433 1.8481 0.00075687 409.5378676536222 28.944 0.37209 28.882 28.644 29.016 -0.062159 34 15 3 0 0 0 0.60623 1 14910 14910 6.1918 1.2948 1 4346700 56711 15860 37923 38778 66121 66121 -0.012394269971309768 RYPQSIFSTF 10 Unmodified _RYPQSIFSTF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3173828125 2 623.316763 1244.61897 0.82524 0.00051438 0.2401 0.00014966 1.0653 0.00066405 623.3170565522695 70.325 0.85401 70.361 70.04 70.894 0.035507 108 40 4 0 0 0 0.078742 2 38752 38650;38752 51.415 20.779 1 25094000 56712 4534 37924 38779 66122;66123 66123 0.006447995347571123 RYPQSIFSTF 10 Unmodified _RYPQSIFSTF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.3181762695312 2 623.316763 1244.61897 1.0501 0.00065457 0.066398 4.1387E-05 1.1165 0.00069596 623.3167842992234 88.132 1.1064 81.957 81.405 82.512 -6.1757 136 61 3 0 0 0 0.0023019 5 58385 57873;57999;58129;58251;58385 106.94 65.101 1 44520000 56713 4534 37924 38779 66124;66125;66126;66127;66128 66128 0.006447995347571123 RYPQSIFSTF 10 Unmodified _RYPQSIFSTF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2 ENSG00000133812|ENST00000256190|SBF2 ENSG00000133812|ENST00000256190|SBF2 MSMS AL20221201_MKP_PDAC_01 4 623.3152465820312 2 623.316763 1244.61897 NaN NaN NaN NaN NaN NaN NaN 88.688 1 82.512 82.012 83.012 -6.1757 0 0 0 0.29999 1 58522 58522 37.075 2.1426 1 56714 4534 37924 38779 66129 66129 0.006447995347571123 RYPSNLQLF 9 Unmodified _RYPSNLQLF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3053588867188 2 569.306198 1136.59784 0.74776 0.0004257 0.21989 0.00012518 0.96765 0.00055089 569.3060961439818 62.733 0.32509 62.247 62.021 62.346 -0.48617 27 15 3 0 0 0 0.18144 1 34132 34132 24.991 1.8425 1 6259200 56715 4151 37925 38780 66130 66130 0.035008342259061465 RYPSNLQLF 9 Unmodified _RYPSNLQLF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.306396484375 2 569.306198 1136.59784 0.37684 0.00021454 -0.39479 -0.00022476 -0.017949 -1.0218E-05 569.3059303335904 62.255 0.68554 62.222 61.946 62.631 -0.032787 95 35 4 0 0 0 0.032796 3 33906 33906;34007;34121 53.833 24.751 1 100850000 56716 4151 37925 38780 66131;66132;66133 66131 0.035008342259061465 RYPSNLQLF 9 Unmodified _RYPSNLQLF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3043823242188 2 569.306198 1136.59784 0.98971 0.00056345 -2.1001 -0.0011956 -1.1104 -0.00063213 569.3050055925344 70.326 1.2342 64.15 63.343 64.577 -6.1757 94 68 2 0 0 0 0.032796 5 45800 45620;45800;45938;46065;46205 53.833 17.706 1 43485000 56717 4151 37925 38780 66134;66135;66136;66137;66138 66135 0.035008342259061465 RYPSNLQLF 9 Unmodified _RYPSNLQLF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 569.306198 1136.59784 0.74776 0.0004257 0.21989 0.00012518 0.96765 0.00055089 569.3060961439818 62.733 0.32509 62.247 62.021 62.346 -0.48617 0.012167 0.00059296 NaN 53.833 27 15 3 NaN NaN NaN NaN 0 NaN NaN 0 6259200 56718 4151 37925 38780 0.035008342259061465 RYPSSRHYR 9 Unmodified _RYPSSRHYR_ 0 0 0 REV__ENSG00000181555|ENST00000409792|SETD2 REV__ENSG00000181555|ENST00000409792|SETD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8804321289062 3 407.879372 1220.61629 NaN NaN NaN NaN NaN NaN NaN 21.734 1 21.734 21.234 22.234 0 0 0 0 0.85737 1 11019 11019 0.26902 0 1 + 56719 23211 37926 38781 66139 66139 0.014803889204586085 RYPSYRTPF 9 Unmodified _RYPSYRTPF_ 0 0 0 REV__nc|ENSG00000188994|O60281-2|ZNF292 REV__nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8045043945312 2 593.803823 1185.59309 1.1963 0.00071037 -1.2356 -0.00073371 -0.039308 -2.3341E-05 593.8039000831919 50.098 0.44473 50.049 49.846 50.291 -0.048828 71 21 5 0 0 0 0.19127 1 27050 27050 24.021 8.1734 1 7059100 + 56720 23752 37927 38782 66140 66140 0.007719500831171899 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2830810546875 2 504.279649 1006.54475 0.53808 0.00027134 -0.62294 -0.00031414 -0.084859 -4.2793E-05 504.2791977564626 48.08 0.62697 48.08 47.767 48.394 0 90 30 4 0 0 0 0.036857 2 26244 26244;26361 51.63 11.68 1 42005000 56721 6327 37928 38783 66141;66142 66141 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2795715332031 2 504.279649 1006.54475 0.0026311 1.3268E-06 -0.18204 -9.1797E-05 -0.17941 -9.047E-05 504.2794467901712 48.326 0.74117 47.954 47.556 48.297 -0.37172 128 37 5 0 0 0 0.011671 2 25857 25758;25857 75.761 13.188 1 675220000 56722 6327 37928 38783 66143;66144 66144 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.280029296875 2 504.279649 1006.54475 0.51478 0.00025959 0.50196 0.00025313 1.0167 0.00051272 504.2798880318604 48.017 0.74413 47.978 47.62 48.364 -0.038643 88 36 3 0 0 0 0.0082475 3 25843 25743;25843;25945 92.653 13.925 1 142720000 56723 6327 37928 38783 66145;66146;66147 66146 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20221201_MKP_PDAC_01 4 504.2822570800781 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 53.27 1 47.466 46.966 47.966 -5.8042 0 0 0 0.023257 1 33649 33649 114.65 14.85 1 56724 6327 37928 38783 66148 66148 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20221201_MKP_PDAC_01 4 504.2798461914062 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 53.457 1 47.653 47.153 48.153 -5.8042 0 0 0 0.024473 1 33794 33794 72.968 12.894 1 56725 6327 37928 38783 66149 66149 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20221201_MKP_PDAC_01 4 504.2797546386719 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 53.664 1 47.86 47.36 48.36 -5.8042 0 0 0 0.098496 1 33945 33945 43.772 5.7984 1 56726 6327 37928 38783 66150 66150 0.04173456443231771 RYPTSIASL 9 Unmodified _RYPTSIASL_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20221201_MKP_PDAC_01 4 504.2802734375 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 53.841 1 48.037 47.537 48.537 -5.8042 0 0 0 0.016974 1 34073 34073 82.529 13.424 1 56727 6327 37928 38783 66151 66151 0.04173456443231771 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.8338012695312 2 613.332413 1224.65027 0.43338 0.00026581 0.086547 5.3082E-05 0.51993 0.00031889 613.3327614215318 70.677 0.31172 70.2 70.099 70.411 -0.47735 38 18 3 0 0 0 0.15928 1 38726 38726 35.612 10.621 1 3716200 56728 6327 37929 38784 66152 66152 0.04693372568840459 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.331298828125 2 613.332413 1224.65027 NaN NaN NaN NaN NaN NaN NaN 70.597 1 70.12 69.62 70.62 -0.47735 0 0 0 0.40236 1 38624 38624 28.234 3.2427 1 56729 6327 37929 38784 66153 66153 0.04693372568840459 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3324584960938 2 613.332413 1224.65027 0.63168 0.00038743 -0.49544 -0.00030387 0.13624 8.3562E-05 613.3320622664461 70.047 0.83729 70.078 69.707 70.544 0.030952 162 41 5 0 0 0 0.072475 4 38449 38449;38557;38663;38799 46.022 14.754 1 360530000 56730 6327 37929 38784 66154;66155;66156;66157 66154 0.04693372568840459 RYPTSIASLAF 11 Unmodified _RYPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3335571289062 2 613.332413 1224.65027 1.0495 0.00064371 0.76003 0.00046615 1.8096 0.0011099 613.332847141656 87.77 1.0956 81.595 80.843 81.939 -6.1757 221 60 5 0 0 0 0.12819 4 57549 57549;57678;57802;57925 39.213 7.9447 1 567730000 56731 6327 37929 38784 66158;66159;66160;66161 66158 0.04693372568840459 RYPTTFVMV 9 Oxidation (M) _RYPTTFVM(Oxidation (M))V_ RYPTTFVM(1)V RYPTTFVM(54)V 0 0 1 ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5 ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENST00000470936.1_1_3:69134198-69151212:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2889404296875 2 565.289159 1128.56377 1.0719 0.00060591 -0.71319 -0.00040316 0.35867 0.00020275 565.2887254952208 52.595 0.49895 52.536 52.229 52.728 -0.058918 45 24 2 0 0 0 0.032796 2 28379 28379;28488 53.833 23.608 1 13971000 56732 5641 37930 38785 66162;66163 66162 1031 0.004626697426374449 RYPTTFVMV 9 Unmodified _RYPTTFVMV_ 0 0 0 ENST00000470936.1_1_3:69134198-69151212:+|nuORF;ENSG00000144746|ENST00000273258|ARL6IP5 ENST00000470936.1_1_3:69134198-69151212:+|nuORF ENST00000470936.1_1_3:69134198-69151212:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2896118164062 2 557.291702 1112.56885 0.82376 0.00045907 -1.1778 -0.00065638 -0.35405 -0.00019731 557.2909552181095 67.496 0.49218 61.32 61.091 61.583 -6.1757 54 27 3 0 0 0 0.11784 1 43885 43885 31.268 5.869 1 22503000 56733 5641 37930 38786 66164 66164 0.01706973605246276 RYPVCKFPSL 10 Carbamidomethyl (C) _RYPVC(Carbamidomethyl (C))KFPSL_ RYPVC(1)KFPSL RYPVC(41)KFPSL 0 1 0 ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C ENSG00000145780|ENST00000274457|FEM1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8941040039062 3 422.893631 1265.65906 0.30551 0.0001292 0.45066 0.00019058 0.75617 0.00031978 422.89396718624477 48.56 0.33359 48.516 48.341 48.674 -0.04369 54 16 4 0 0 0 0.1379 1 26256 26256 41.347 33.061 1 8962200 56734 5725 37931 38787 66165 66165 587 0.036860229336753036 RYPVGRFPSL 10 Unmodified _RYPVGRFPSL_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENST00000431297.1_1_21:15134673-15136650:+|nuORF ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2275085449219 3 397.892619 1190.65603 0.38475 0.00015309 0.21645 8.6124E-05 0.6012 0.00023921 397.89263780635576 49.308 0.38969 49.265 49.027 49.417 -0.04369 57 18 4 0 0 0 0.033218 2 26696 26588;26696 57.108 31.11 1 12096000 56735 5383 37932 38788 66166;66167 66167 0.06832515871178657 RYPVGRFPSL 10 Unmodified _RYPVGRFPSL_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENST00000431297.1_1_21:15134673-15136650:+|nuORF ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3350219726562 2 596.33529 1190.65603 0.41182 0.00024558 -0.61573 -0.00036718 -0.20391 -0.0001216 596.3349104710829 49.308 0.36842 49.265 49.049 49.417 -0.04369 41 17 3 0 0 0 0.44171 1 26602 26602 19.362 13.63 1 5784500 56736 5383 37932 38788 66168 66168 0.06832515871178657 RYPVGRFPSL 10 Unmodified _RYPVGRFPSL_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A;ENST00000431297.1_1_21:15134673-15136650:+|nuORF ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8926391601562 3 397.892619 1190.65603 1.293 0.00051448 -0.011552 -4.5963E-06 1.2815 0.00050989 397.89243573419367 54.364 0.4667 48.499 48.19 48.656 -5.8653 51 27 3 0 0 0 0.043225 1 34419 34419 53.47 37.195 1 20046000 56737 5383 37932 38788 66169 66169 0.06832515871178657 RYPVTPEL 8 Unmodified _RYPVTPEL_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7773742675781 2 487.768917 973.523281 0.75079 0.00036621 -0.15468 -7.5448E-05 0.59611 0.00029076 487.7685349172715 76.12 0.85645 69.945 69.396 70.252 -6.1757 105 46 3 0 0 0 0.74163 1 49430 49430 13.508 13.508 1 62990000 56738 10025 37933 38789 66170 66170 0.035460714145074235 RYPWKAREL 9 Unmodified _RYPWKAREL_ 0 0 0 REV__ENSG00000128713|ENST00000249504|HOXD11 REV__ENSG00000128713|ENST00000249504|HOXD11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2471008300781 3 406.896252 1217.66693 -0.14376 -5.8494E-05 0.85349 0.00034728 0.70973 0.00028879 406.8964417836691 33.665 0.21017 33.694 33.582 33.792 0.028931 18 8 3 0 0 0 0.21572 1 17772 17772 4.5289 0.33936 1 1019100 + 56739 19631 37934 38790 66171 66171 0.06679918245458794 RYQALFHDF 9 Unmodified _RYQALFHDF_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5333557128906 3 399.533091 1195.57744 0.1807 7.2197E-05 0.11668 4.6619E-05 0.29739 0.00011882 399.5333536885576 51.126 0.2793 50.712 50.557 50.836 -0.41351 33 13 3 0 0 0 0.2546 1 27603 27603 19.362 15.172 1 4155100 56740 8482 37935 38791 66172 66172 -0.012523364339131149 RYQALFHDF 9 Unmodified _RYQALFHDF_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7972412109375 2 598.795998 1195.57744 0.095895 5.7422E-05 1.6651 0.00099703 1.7609 0.0010544 598.7971787538355 55.821 0.21609 49.9 49.737 49.953 -5.9211 16 12 2 0 0 0 0.040733 1 35579 35579 62.573 37.582 1 17407000 56741 8482 37935 38791 66173 66173 -0.012523364339131149 RYQALFHDF 9 Unmodified _RYQALFHDF_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.296875 2 598.795998 1195.57744 0.084395 5.0535E-05 0.70312 0.00042102 0.78751 0.00047156 598.7972976572212 80.647 0.41673 74.472 74.296 74.713 -6.1757 46 22 3 0 0 0 0.037253 2 52877 52813;52877 56.177 35.763 1 35026000 56742 8482 37935 38791 66174;66175 66175 -0.012523364339131149 RYQATGLHF 9 Unmodified _RYQATGLHF_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7832641601562 2 546.78289 1091.55123 -0.21765 -0.00011901 1.0568 0.00057785 0.83917 0.00045884 546.7833950069828 37.609 0.23414 37.338 37.206 37.44 -0.27133 22 9 3 0 0 0 0.085319 1 19780 19780 36.506 7.4246 1 9626600 56743 9204 37936 38792 66176 66176 0.009113943945976644 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3175659179688 2 584.317097 1166.61964 -0.11738 -6.8589E-05 0.09522 5.5638E-05 -0.022164 -1.2951E-05 584.3171068879365 45.323 0.27113 44.999 44.905 45.176 -0.32425 50 19 3 0 0 0 0.00010239 2 24172 24172;24275 152.89 58.76 1 147460000 56744 1759 37937 38793 66177;66178 66177 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8811950683594 3 389.88049 1166.61964 NaN NaN NaN NaN NaN NaN NaN 45.356 1 45.032 44.532 45.532 -0.32425 0 0 0 0.00086531 1 24228 24228 110.79 45.319 1 56745 1759 37937 38793 66179 66179 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3171997070312 2 584.317097 1166.61964 0.32596 0.00019046 -0.50464 -0.00029487 -0.17868 -0.00010441 584.3167575438679 45.067 0.33624 45.045 44.855 45.191 -0.022064 52 18 4 0 0 0 0.0085366 2 24131 24131;24230 90.135 48.179 1 297810000 56746 1759 37937 38793 66180;66181 66180 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8801574707031 3 389.88049 1166.61964 NaN NaN NaN NaN NaN NaN NaN 45.005 1 44.983 44.483 45.483 -0.022064 0 0 0 0.00086531 1 24161 24161 110.79 45.319 1 56747 1759 37937 38793 66182 66182 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8810729980469 3 389.88049 1166.61964 1.4468 0.00056408 0.017637 6.8764E-06 1.4644 0.00057095 389.88050210203744 50.276 0.51511 44.737 44.502 45.017 -5.5391 127 33 5 0 0 0 0.0074135 3 31541 31395;31541;31687 91.085 41.558 1 348700000 56748 1759 37937 38793 66183;66184;66185 66184 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3173828125 2 584.317097 1166.61964 1.0821 0.00063226 -0.22156 -0.00012946 0.8605 0.0005028 584.31693612707 50.285 0.66063 44.746 44.408 45.068 -5.5391 151 42 5 0 0 0 0.0025703 3 31707 31434;31565;31707 128.93 55.964 1 748110000 56749 1759 37937 38793 66186;66187;66188 66188 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2137451171875 3 389.88049 1166.61964 0.89667 0.00034959 -0.39118 -0.00015251 0.50549 0.00019708 390.2145095782054 58.149 0.54707 52.122 51.957 52.504 -6.0275 38 29 2 0 0 0 0.008513 3 37476 37272;37287;37476 81.915 46.303 1 25517000 56750 1759 37937 38793 66189;66190;66191 66191 0.04299638974453046 RYQDAIRVF 9 Unmodified _RYQDAIRVF_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MSMS AL20221201_MKP_PDAC_01 4 389.8812255859375 3 389.88049 1166.61964 NaN NaN NaN NaN NaN NaN NaN 58.797 1 52.722 52.222 53.222 -6.0745 0 0 0 0.030047 1 37699 37699 53.317 26.093 1 56751 1759 37937 38793 66192 66192 0.04299638974453046 RYQDELTALL 10 Unmodified _RYQDELTALL_ 0 0 0 ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.3284912109375 2 611.327328 1220.6401 -0.12325 -7.5348E-05 -0.6075 -0.00037138 -0.73075 -0.00044673 611.3272617506692 70.748 0.26482 70.748 70.542 70.807 0 34 21 2 0 0 0 0.40046 1 39353 39353 21.59 6.3417 1 1988500 56752 4140 37938 38794 66193 66193 0.038607648436027375 RYQDELTALL 10 Unmodified _RYQDELTALL_ 0 0 0 ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA ENSG00000129474|ENST00000262713|AJUBA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.3287353515625 2 611.327328 1220.6401 0.53595 0.00032764 0.19334 0.00011819 0.72928 0.00044583 611.3276084568176 71.179 0.31128 70.701 70.505 70.816 -0.47735 27 13 3 0 0 0 0.11654 1 38916 38916 43.982 11.196 1 1543600 56753 4140 37938 38794 66194 66194 0.038607648436027375 RYQDFDWL 8 Unmodified _RYQDFDWL_ 0 0 0 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5140075683594 3 381.513696 1141.51926 0.68429 0.00026107 -0.65883 -0.00025135 0.025465 9.7152E-06 381.5134406787059 46.123 0.85739 46.123 45.882 46.74 0 138 40 6 0 0 0 0.5284 1 25431 25431 25.399 13.905 1 506740000 56754 5898 37939 38795 66195 66195 -0.045840180791856255 RYQDFDWL 8 Unmodified _RYQDFDWL_ 0 0 0 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 ENSG00000148158|ENST00000374232|SNX30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5137939453125 3 381.513696 1141.51926 0.62082 0.00023685 0.50287 0.00019185 1.1237 0.0004287 381.8481310012328 46.76 0.11834 46.424 46.385 46.503 -0.33664 7 5 2 0 0 0 0.61462 1 25033 25033 19.257 12.627 1 1131100 56755 5898 37939 38795 66196 66196 -0.045840180791856255 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8095703125 2 572.809105 1143.60366 0.77485 0.00044384 0.14958 8.5678E-05 0.92442 0.00052952 572.8091448223498 46.471 0.36197 46.471 46.294 46.656 0 66 16 5 0 0 0 0.033747 2 25438 25334;25438 66.457 22.684 1 109890000 56756 410 37940 38796 66197;66198 66198 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.208740234375 3 382.208495 1143.60366 0.47108 0.00018005 0.91344 0.00034913 1.3845 0.00052918 382.20884872863246 46.453 0.46771 46.453 46.21 46.678 0 55 21 4 0 0 0 0.012228 2 25375 25375;25476 74.2 58.951 1 18818000 56757 410 37940 38796 66199;66200 66199 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8092651367188 2 572.809105 1143.60366 0.7586 0.00043453 -0.22472 -0.00012872 0.53387 0.00030581 572.8089163324404 46.711 0.41267 46.375 46.149 46.562 -0.33664 76 20 5 0 0 0 0.024507 2 24938 24938;25037 72.968 33.018 1 212740000 56758 410 37940 38796 66201;66202 66201 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8095703125 2 572.809105 1143.60366 0.50403 0.00028871 0.26073 0.00014935 0.76476 0.00043806 572.8092752428443 51.951 0.56351 46.216 45.967 46.53 -5.7345 115 37 4 0 0 0 0.0047912 3 32621 32621;32768;32903 142.08 56.438 1 639250000 56759 410 37940 38796 66203;66204;66205 66203 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2096862792969 3 382.208495 1143.60366 0.85172 0.00032553 1.0602 0.00040522 1.9119 0.00073076 382.20899105272423 51.977 0.41846 46.242 46.019 46.437 -5.7345 71 28 3 0 0 0 0.0081887 2 32652 32652;32795 96.936 73.54 1 193200000 56760 410 37940 38796 66206;66207 66206 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8087158203125 2 572.809105 1143.60366 1.4764 0.00084571 0.019255 1.1029E-05 1.4957 0.00085674 572.8091509235753 58.674 1.2162 52.6 52.218 53.434 -6.0745 132 67 3 0 0 0 0.010362 3 37415 37415;37543;37678 96.367 46.812 1 31040000 56761 410 37940 38796 66208;66209;66210 66208 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2098388671875 3 382.208495 1143.60366 1.8543 0.00070871 0.66088 0.00025259 2.5151 0.0009613 382.20875670788826 58.495 0.45704 52.421 52.299 52.756 -6.0745 36 25 2 0 0 0 0.0093064 1 37489 37489 83.429 63.803 1 8130100 56762 410 37940 38796 66211 66211 0.03759932737557392 RYQDIIHSI 9 Unmodified _RYQDIIHSI_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;ENST00000466844.1_1_7:72877242-72880699:-|nuORF ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MSMS AL20221201_MKP_PDAC_01 4 382.2090148925781 3 382.208495 1143.60366 NaN NaN NaN NaN NaN NaN NaN 58.78 1 52.705 52.205 53.205 -6.0745 0 0 0 0.097684 1 37684 37684 43.982 29.025 1 56763 410 37940 38796 66212 66212 0.03759932737557392 RYQDLRQKI 9 Unmodified _RYQDLRQKI_ 0 0 0 ENST00000595484.5_1_19:47984015-47987327:-|nuORF;ENSG00000118162|ENST00000338134|KPTN ENST00000595484.5_1_19:47984015-47987327:-|nuORF ENST00000595484.5_1_19:47984015-47987327:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.236328125 3 407.235045 1218.6833 -0.0073444 -2.9909E-06 -0.59187 -0.00024103 -0.59922 -0.00024402 407.23462972758387 25.537 0.41106 22.654 22.371 22.782 -2.8831 33 22 2 0 0 0 0.076472 1 13957 13957 38.615 24.397 1 7652800 56764 3353 37941 38797 66213 66213 0.08270999411547564 RYQDQDDDD 9 Unmodified _RYQDQDDDD_ 0 0 0 ENSG00000182107|ENST00000555868|TMEM30B;ENST00000557163.1_1_14:61746812-61748042:-|nuORF ENSG00000182107|ENST00000555868|TMEM30B ENSG00000182107|ENST00000555868|TMEM30B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.4815979003906 3 390.482901 1168.42687 NaN NaN NaN NaN NaN NaN NaN 15.148 1 15.134 14.634 15.634 -0.014067 0 0 0 0.86004 1 7419 7419 0.26902 0.033176 1 56765 9017 37942 38798 66214 66214 -0.15060192674036443 RYQEALSEL 9 Unmodified _RYQEALSEL_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-3|C1orf43 nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7861938476562 2 554.785296 1107.55604 0.29394 0.00016307 1.482 0.00082218 1.7759 0.00098525 554.7852613562652 43.466 0.32472 43.466 43.28 43.605 0 50 15 4 0 0 0 0.0081 1 23549 23549 103.35 25.204 1 67147000 56766 5533 37943 38799 66215 66215 0.006562337466903045 RYQEDVQQL 9 Unmodified _RYQEDVQQL_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7929077148438 2 589.793652 1177.57275 -0.69756 -0.00041142 0.62735 0.00037001 -0.070207 -4.1408E-05 589.7935331053964 30.12 0.24899 30.12 29.994 30.243 0 25 11 3 0 0 0 0.0086904 1 15623 15623 107.19 57.254 1 9381500 56767 3920 37944 38800 66216 66216 -0.008932653673355162 RYQEDVQQL 9 Unmodified _RYQEDVQQL_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7935791015625 2 589.793652 1177.57275 0.83287 0.00049122 0.41673 0.00024579 1.2496 0.00073701 589.793397212762 34.298 0.36153 30.313 30.115 30.476 -3.9853 45 20 3 0 0 0 0.0087873 2 19804 19674;19804 103.35 38.118 1 22326000 56768 3920 37944 38800 66217;66218 66218 -0.008932653673355162 RYQEGPVRL 9 Unmodified _RYQEGPVRL_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3092651367188 2 559.309272 1116.60399 0.29966 0.00016761 -0.12695 -7.1006E-05 0.17271 9.6599E-05 559.3094220291631 31.193 0.22573 31.193 31.071 31.296 0 26 10 3 0 0 0 0.20389 1 16215 16215 23.79 23.79 1 4246600 56769 6643 37945 38801 66219 66219 0.050353524574120456 RYQEGPVRL 9 Unmodified _RYQEGPVRL_ 0 0 0 nc|ENSG00000159267|P50747|HLCS;ENSG00000159267|ENST00000674895|HLCS nc|ENSG00000159267|P50747|HLCS nc|ENSG00000159267|P50747|HLCS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3106079101562 2 559.309272 1116.60399 0.49446 0.00027656 0.88781 0.00049656 1.3823 0.00077311 559.310079472043 31.197 0.17676 31.094 30.984 31.161 -0.10269 14 6 3 0 0 0 0.2862 1 16186 16186 18.373 5.3306 1 3853800 56770 6643 37945 38801 66220 66220 0.050353524574120456 RYQEKISAL 9 Unmodified _RYQEKISAL_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8768005371094 3 369.876746 1106.60841 -0.60483 -0.00022371 0.025228 9.3314E-06 -0.5796 -0.00021438 369.87672967890705 28.681 0.18131 28.681 28.6 28.781 0 18 8 3 0 0 0 0.1685 1 14825 14825 24.882 0 1 2955700 56771 8304 37946 38802 66221 66221 0.059368168803075605 RYQEKISAL 9 Unmodified _RYQEKISAL_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3118896484375 2 554.31148 1106.60841 0.74442 0.00041264 0.25036 0.00013878 0.99478 0.00055142 554.8132103300005 31.86 0.22112 28.164 28.086 28.307 -3.6958 22 11 3 0 0 0 0.0090524 1 18078 18078 85.642 17.561 1 18343000 56772 8304 37946 38802 66222 66222 0.059368168803075605 RYQEKISAL 9 Unmodified _RYQEKISAL_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8770446777344 3 369.876746 1106.60841 1.264 0.00046754 -0.81282 -0.00030064 0.45122 0.0001669 369.8765354754106 31.856 0.27208 28.16 28.035 28.307 -3.6958 22 14 2 0 0 0 0.10247 1 18096 18096 37.075 9.8514 1 16366000 56773 8304 37946 38802 66223 66223 0.059368168803075605 RYQEKWDKLLL 11 Unmodified _RYQEKWDKLLL_ 0 0 0 ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3154296875 3 497.948793 1490.82455 0.69275 0.00034496 0.91124 0.00045375 1.604 0.00079871 498.28371484726216 52.269 0.13998 52.21 52.127 52.267 -0.058918 8 6 2 0 0 0 0.30583 1 28300 28300 1.6479 1.2396 1 1143500 56774 8397 37947 38803 66224 66224 0.0987695299418192 RYQEMIQKL 9 Oxidation (M) _RYQEM(Oxidation (M))IQKL_ RYQEM(1)IQKL RYQEM(51)IQKL 0 0 1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8851623535156 3 408.885024 1223.63324 -0.65227 -0.0002667 0.54987 0.00022483 -0.1024 -4.187E-05 408.88527731579177 26.82 0.42077 26.82 26.699 27.12 0 60 19 4 0 0 0 0.037253 2 13776 13776;13879 51.415 27.625 1 7468200 56775 6116 37948 38804 66225;66226 66225 1090 0.030371286913805307 RYQEMIQKL 9 Oxidation (M) _RYQEM(Oxidation (M))IQKL_ RYQEM(1)IQKL RYQEM(67)IQKL 0 0 1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8852844238281 3 408.885024 1223.63324 0.6643 0.00027162 -0.72416 -0.0002961 -0.059855 -2.4474E-05 408.88500591933166 30.027 0.34195 26.531 26.23 26.572 -3.497 25 16 2 0 0 0 0.016448 1 16800 16800 67.081 30.006 1 20294000 56776 6116 37948 38804 66227 66227 1090 0.030371286913805307 RYQEMIQKL 9 Unmodified _RYQEMIQKL_ 0 0 0 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.88818359375 3 403.553386 1207.63833 1.6707 0.00067422 -0.49982 -0.0002017 1.1709 0.00047252 403.55324296979467 41.711 0.46681 37.103 36.894 37.36 -4.6079 81 29 4 0 0 0 0.012668 2 24979 24979;25116 59.052 34.171 1 43255000 56777 6116 37948 38805 66228;66229 66228 0.04281432554012099 RYQEMIQKL 9 Unmodified _RYQEMIQKL_ 0 0 0 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8262939453125 2 604.82644 1207.63833 1.1261 0.00068109 -0.45302 -0.000274 0.67307 0.00040709 604.8267471522951 41.726 0.38353 37.118 36.91 37.294 -4.6079 59 24 3 0 0 0 0.0087807 2 25016 25016;25153 106.94 37.835 1 28939000 56778 6116 37948 38805 66230;66231 66230 0.04281432554012099 RYQEMIQKL 9 Unmodified _RYQEMIQKL_ 0 0 0 ENST00000502495.1_1_4:129805634-129873545:-|nuORF;ENSG00000151466|ENST00000281142|SCLT1 ENST00000502495.1_1_4:129805634-129873545:-|nuORF ENST00000502495.1_1_4:129805634-129873545:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 604.82644 1207.63833 -0.15781 -9.5445E-05 -0.16697 -0.00010099 -0.32477 -0.00019643 604.826460655148 37.442 0.16166 37.17 37.092 37.254 -0.27133 0.026139 0.00031048 NaN 106.94 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1129600 56779 6116 37948 38805 0.04281432554012099 RYQERFKHI 9 Unmodified _RYQERFKHI_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3;ENST00000550564.1_1_12:53468877-53473168:-|nuORF ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2356262207031 3 426.235156 1275.68364 0.80605 0.00034357 0.27265 0.00011622 1.0787 0.00045978 426.235266806244 18.077 0.26751 15.456 15.314 15.582 -2.6215 54 21 4 0 0 0 0.078314 1 9479 9479 29.437 0 1 13312000 56780 7669 37949 38806 66232 66232 0.05682419131403549 RYQEVDRRF 9 Unmodified _RYQEVDRRF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.5542602539062 3 423.554666 1267.64217 -0.47753 -0.00020226 0.57939 0.00024541 0.10187 4.3147E-05 423.5549075242556 19.56 0.21133 19.56 19.417 19.628 0 102 27 5 0 0 0 0.040733 1 9748 9748 49.527 41.681 1 21737000 56781 1379 37950 38807 66233 66233 0.01905238372069107 RYQEVDRRF 9 Unmodified _RYQEVDRRF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5543518066406 3 423.554666 1267.64217 -0.50658 -0.00021456 0.50031 0.00021191 -0.0062692 -2.6554E-06 423.55488566772044 19.396 0.17157 19.419 19.33 19.501 0.023106 58 16 5 0 0 0 0.19361 1 9758 9758 23.79 17.166 1 5584900 56782 1379 37950 38807 66234 66234 0.01905238372069107 RYQEVDRRF 9 Unmodified _RYQEVDRRF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.5547790527344 3 423.554666 1267.64217 0.09995 4.2334E-05 0.49999 0.00021177 0.59994 0.00025411 423.8892220564374 19.55 0.1287 19.558 19.481 19.61 0.0078487 15 8 2 0 0 0 0.331 1 9930 9930 15.739 11.862 1 1870200 56783 1379 37950 38807 66235 66235 0.01905238372069107 RYQEVDRRF 9 Unmodified _RYQEVDRRF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5553588867188 3 423.554666 1267.64217 1.4553 0.0006164 -0.47897 -0.00020287 0.97632 0.00041352 423.554494824052 21.506 0.43217 18.772 18.583 19.015 -2.7348 127 36 5 0 0 0 0.0085366 2 11539 11539;11642 90.135 75.73 1 96467000 56784 1379 37950 38807 66236;66237 66236 0.01905238372069107 RYQEVIQEL 9 Unmodified _RYQEVIQEL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3141479492188 2 589.31422 1176.61389 -0.50675 -0.00029863 0.54572 0.0003216 0.038973 2.2967E-05 589.3145614939153 48.521 0.40549 48.521 48.33 48.736 0 59 19 4 0 0 0 0.0086209 2 26561 26561;26676 89.401 43.38 1 65440000 56785 1070 37951 38808 66238;66239 66238 0.032644956721242124 RYQEVIQEL 9 Unmodified _RYQEVIQEL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.3146362304688 2 589.31422 1176.61389 0.95404 0.00056223 2.009 0.0011839 2.963 0.0017462 589.3158353270316 54.37 0.52737 48.505 48.354 48.881 -5.8653 86 32 4 0 0 0 0.010301 1 34593 34593 79.596 23.419 1 105010000 56786 1070 37951 38808 66240 66240 0.032644956721242124 RYQFKIEL 8 Unmodified _RYQFKIEL_ 0 0 0 REV__nc|ENSG00000128604|Q13568-5|IRF5 REV__nc|ENSG00000128604|Q13568-5|IRF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.8107299804688 2 548.811116 1095.60768 NaN NaN NaN NaN NaN NaN NaN 28.643 1 28.581 28.081 29.081 -0.062159 0 0 0 0.96881 1 14790 14790 2.3027 0 1 + 56787 19624 37952 38809 66241 66241 0.06370022231271832 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7962036132812 2 601.795663 1201.57677 0.074724 4.4968E-05 -1.1083 -0.00066695 -1.0335 -0.00062198 601.7960886481097 66.4 0.27439 66.4 66.216 66.491 0 28 11 3 0 0 0 0.094149 1 36995 36995 34.402 0 1 2294600 56788 9940 37953 38810 66242 66242 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7963256835938 2 601.795663 1201.57677 NaN NaN NaN NaN NaN NaN NaN 66.514 1 66.514 66.014 67.014 0 0 0 0 0.46232 1 37097 37097 17.113 0 1 56789 9940 37953 38810 66243 66243 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7942504882812 2 601.795663 1201.57677 0.52376 0.0003152 -1.132 -0.00068126 -0.60828 -0.00036606 601.794914956923 62.844 0.5031 62.357 62.162 62.665 -0.48617 73 24 4 0 0 0 0.039985 2 34195 34195;34297 49.933 0 1 103680000 56790 9940 37953 38810 66244;66245 66244 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.296142578125 2 601.795663 1201.57677 0.28247 0.00016999 0.6244 0.00037576 0.90687 0.00054575 601.7964428288739 66.838 0.60572 66.355 65.984 66.59 -0.48323 70 28 4 0 0 0 0.039985 2 36493 36493;36601 49.933 0 1 8591800 56791 9940 37953 38810 66246;66247 66246 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7948608398438 2 601.795663 1201.57677 -0.025892 -1.5582E-05 -0.75601 -0.00045496 -0.7819 -0.00047054 602.2964721963771 85.737 0.57248 79.562 79.277 79.85 -6.1757 49 32 2 0 0 0 0.07087 1 56438 56438 39.95 0 1 10165000 56792 9940 37953 38810 66248 66248 -0.01595175873626431 RYQFLEEAF 9 Unmodified _RYQFLEEAF_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 601.795663 1201.57677 0.16738 0.00010073 0.42346 0.00025484 0.59085 0.00035557 601.795997287071 62.424 0.25801 62.391 62.311 62.569 -0.032787 0.022187 0.0018639 NaN 49.933 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 9691600 56793 9940 37953 38810 -0.01595175873626431 RYQFTPAFL 9 Unmodified _RYQFTPAFL_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B;ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000175970|ENST00000344651|UNC119B;ENSG00000109103|ENST00000335765|UNC119 ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.80419921875 2 571.803291 1141.59203 0.8149 0.00046596 0.49469 0.00028287 1.3096 0.00074883 571.803841559174 71.487 0.44823 71.526 71.279 71.727 0.039024 72 20 6 0 0 0 0.08907 2 39407 39300;39407 45.7 45.7 1 12587000 56794 8554;2630 37954 38811 66249;66250 66250 0.026897357142161127 RYQFTPAFL 9 Unmodified _RYQFTPAFL_ 0 0 0 ENSG00000175970|ENST00000344651|UNC119B;ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000175970|ENST00000344651|UNC119B;ENSG00000109103|ENST00000335765|UNC119 ENSG00000175970|ENST00000344651|UNC119B MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8025512695312 2 571.803291 1141.59203 0.96095 0.00054948 0.64572 0.00036922 1.6067 0.0009187 571.8035308577983 91.394 0.49629 85.219 84.939 85.435 -6.1757 65 27 3 0 0 0 0.12357 1 60332 60332 39.95 39.95 1 24359000 56795 8554;2630 37954 38811 66251 66251 0.026897357142161127 RYQGVNLYI 9 Unmodified _RYQGVNLYI_ 0 0 0 nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3069458007812 2 563.306198 1124.59784 0.62992 0.00035484 -4.2429 -0.0023901 -3.613 -0.0020352 563.3022414891745 57.483 0.45147 56.993 56.816 57.267 -0.48974 31 21 3 0 0 0 0.042911 1 31222 31222 48.346 18.121 1 5794000 56796 1564 37955 38812 66252 66252 0.0405283422589946 RYQGVNLYI 9 Unmodified _RYQGVNLYI_ 0 0 0 nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3067626953125 2 563.306198 1124.59784 1.1365 0.00064018 -0.60982 -0.00034352 0.52664 0.00029666 563.3060918808397 57.085 0.20129 57.019 56.917 57.119 -0.066036 18 9 2 0 0 0 0.042911 1 31085 31085 48.346 18.121 1 3685800 56797 1564 37955 38812 66253 66253 0.0405283422589946 RYQHIKSRL 9 Unmodified _RYQHIKSRL_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;nc|ENSG00000106477|Q9BYV8-5|CEP41;nc|ENSG00000106477|Q9BYV8-4|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MSMS AL20221201_MKP_PDAC_01 4 400.9026489257812 3 400.903518 1199.68872 NaN NaN NaN NaN NaN NaN NaN 15.164 1 12.637 12.137 13.137 -2.5273 0 0 0 0.73776 1 7757 7757 5.4027 2.0831 1 56798 2430 37956 38813 66254 66254 0.09686722994024421 RYQIPRYPE 9 Unmodified _RYQIPRYPE_ 0 0 0 REV__nc|ENSG00000144283|Q99569-2|PKP4 REV__nc|ENSG00000144283|Q99569-2|PKP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2197570800781 3 407.884012 1220.63021 1.0537 0.00042979 0.1138 4.6416E-05 1.1675 0.00047621 407.8839282637932 19.197 0.38387 16.54 16.329 16.713 -2.6564 37 26 2 0 0 0 0.46162 1 10116 10116 9.544 0.79219 1 5668200 + 56799 20698 37957 38814 66255 66255 0.028716216289012664 RYQKLEAVI 9 Unmodified _RYQKLEAVI_ 0 0 0 ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8889770507812 3 373.888874 1118.64479 -0.3162 -0.00011822 0.30096 0.00011253 -0.015243 -5.6991E-06 373.8889656837809 36.933 0.24237 36.683 36.554 36.796 -0.2497 16 10 2 0 0 0 0.5029 1 19407 19407 4.5289 1.2092 1 2789300 56800 14402 37958 38815 66256 66256 0.09021693777026485 RYQKLEAVI 9 Unmodified _RYQKLEAVI_ 0 0 0 ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8896484375 3 373.888874 1118.64479 1.7472 0.00065325 -0.38441 -0.00014373 1.3628 0.00050952 373.8888316488034 40.964 0.35421 36.356 36.211 36.566 -4.6079 40 21 2 0 0 0 0.43463 1 24570 24570 7.1017 2.2047 1 14072000 56801 14402 37958 38815 66257 66257 0.09021693777026485 RYQKLEAVI 9 Unmodified _RYQKLEAVI_ 0 0 0 ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF ENST00000497542.1_1_7:33069239-33075596:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.888874 1118.64479 0.48344 0.00018075 -0.73641 -0.00027534 -0.25298 -9.4585E-05 373.8888510661828 36.711 0.20783 36.711 36.61 36.818 0 0.12754 -0.00055244 NaN 7.1017 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1128300 56802 14402 37958 38815 0.09021693777026485 RYQKLIVQI 9 Unmodified _RYQKLIVQI_ 0 0 0 nc|ENSG00000106069|P52757-9|CHN2;ENSG00000106069|ENST00000222792|CHN2;nc|ENSG00000106069|P52757-6|CHN2;nc|ENSG00000106069|P52757-5|CHN2;nc|ENSG00000106069|P52757-7|CHN2;nc|ENSG00000106069|P52757-4|CHN2;nc|ENSG00000106069|P52757-8|CHN2;nc|ENSG00000106069|P52757-3|CHN2 nc|ENSG00000106069|P52757-9|CHN2 nc|ENSG00000106069|P52757-9|CHN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.861083984375 2 580.861141 1159.70773 NaN NaN NaN NaN NaN NaN NaN 47.031 1 46.998 46.498 47.498 -0.033417 0 0 0 0.13463 1 25326 25326 41.84 11.203 1 56803 16105 37959 38816 66258 66258 0.13426259565085275 RYQKSTELL 9 Unmodified _RYQKSTELL_ 0 0 0 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12 ENSG00000203852|ENST00000403683|H3C15;ENSG00000278828|ENST00000685041|H3C10 ENSG00000278828|ENST00000685041|H3C10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.316650390625 2 569.316763 1136.61897 -0.26815 -0.00015266 -1.7115 -0.00097439 -1.9797 -0.0011271 569.3157339079012 26.471 0.3331 26.471 26.303 26.636 0 43 15 4 0 0 0 0.020973 1 13570 13570 62.573 10.943 1 13141000 56804 9164;9917 37960 38817 66259 66259 0.056127995347424076 RYQKSTELL 9 Unmodified _RYQKSTELL_ 0 0 0 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12 ENSG00000203852|ENST00000403683|H3C15;ENSG00000278828|ENST00000685041|H3C10 ENSG00000278828|ENST00000685041|H3C10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3163452148438 2 569.316763 1136.61897 0.83494 0.00047535 -0.093281 -5.3106E-05 0.74166 0.00042224 569.3165709897955 29.011 0.33644 25.709 25.57 25.906 -3.3016 33 20 2 0 0 0 0.0090524 2 16208 16208;16340 85.642 16.537 1 70380000 56805 9164;9917 37960 38817 66260;66261 66260 0.056127995347424076 RYQKSTELL 9 Unmodified _RYQKSTELL_ 0 0 0 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12 ENSG00000203852|ENST00000403683|H3C15;ENSG00000278828|ENST00000685041|H3C10 ENSG00000278828|ENST00000685041|H3C10 MSMS AL20221201_MKP_PDAC_01 4 379.8807983398438 3 379.880267 1136.61897 NaN NaN NaN NaN NaN NaN NaN 29.101 1 25.8 25.3 26.3 -3.3016 0 0 0 0.017438 1 16304 16304 74.2 26.605 1 56806 9164;9917 37960 38817 66262 66262 0.056127995347424076 RYQLEYQL 8 Unmodified _RYQLEYQL_ 0 0 0 REV__ENSG00000103522|ENST00000337929|IL21R REV__ENSG00000103522|ENST00000337929|IL21R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.1734619140625 3 371.529346 1111.56621 1.654 0.0006145 1.6535 0.00061433 3.3075 0.0012288 371.52990216664404 32.277 0.21424 28.421 28.319 28.533 -3.8562 22 12 2 0 0 0 8.7369 1 18321 18321 3.5965 0 1 11232000 + 56807 18311 37961 38818 66263 66263 0.014888414719507637 RYQLTYPDDGH 11 Unmodified _RYQLTYPDDGH_ 0 0 0 REV__ENSG00000137975|ENST00000370565|CLCA2 REV__ENSG00000137975|ENST00000370565|CLCA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2123718261719 3 455.545836 1363.61568 0.14911 6.7924E-05 -0.14614 -6.6574E-05 0.0029634 1.35E-06 455.5458293187411 32.339 0.1932 32.369 32.299 32.492 0.029743 11 7 2 0 0 0 0.30403 1 16988 16988 4.7159 0 1 1582600 + 56808 20288 37962 38819 66264 66264 -0.05158495309933642 RYQNIWNINL 10 Unmodified _RYQNIWNINL_ 0 0 0 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000489654.1_1_7:142960606-142961286:+|nuORF;ENST00000473649.1_1_7:142960606-142961786:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.35595703125 2 667.354211 1332.69387 0.54488 0.00036363 0.93133 0.00062153 1.4762 0.00098516 667.3550105610233 74.815 0.27895 74.861 74.682 74.961 0.045967 24 12 3 0 0 0 0.1942 1 41226 41226 34.402 15.04 1 3720000 56809 9957 37963 38820 66265 66265 0.0408298206600648 RYQNIWNINL 10 Unmodified _RYQNIWNINL_ 0 0 0 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000489654.1_1_7:142960606-142961286:+|nuORF;ENST00000473649.1_1_7:142960606-142961786:+|nuORF;nc|ENSG00000197448|Q9Y2Q3-4|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 nc|ENSG00000197448|Q9Y2Q3-3|GSTK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3566284179688 2 667.354211 1332.69387 0.11944 7.9707E-05 0.32229 0.00021508 0.44173 0.00029479 667.3545738057425 93.483 0.29353 87.307 87.193 87.486 -6.1757 20 18 2 0 0 0 0.041224 1 61845 61845 62.573 14.824 1 10076000 56810 9957 37963 38820 66266 66266 0.0408298206600648 RYQNLDRVF 9 Unmodified _RYQNLDRVF_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2160034179688 3 404.215761 1209.62546 1.0775 0.00043555 -0.024969 -1.0093E-05 1.0526 0.00042546 404.2150947161108 36.863 0.51856 32.58 32.324 32.843 -4.2835 70 31 3 0 0 0 0.32871 1 21559 21559 15.248 4.3495 1 50153000 + 56811 17512 37964 38821 66267 66267 0.029027374861243516 RYQNLDRVF 9 Unmodified _RYQNLDRVF_ 0 0 0 REV__ENSG00000072274|ENST00000360110|TFRC REV__ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.8204956054688 2 605.820004 1209.62546 0.56067 0.00033966 0.10236 6.2013E-05 0.66303 0.00040168 605.8200330109863 36.85 0.44466 32.567 32.337 32.782 -4.2835 72 26 4 0 0 0 0.12424 1 21603 21603 30.637 5.2372 1 33517000 + 56812 17512 37964 38821 66268 66268 0.029027374861243516 RYQPQSGYW 9 Unmodified _RYQPQSGYW_ 0 0 0 ENST00000481603.1_1_11:5631742-5632569:+|nuORF;nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 ENST00000481603.1_1_11:5631742-5632569:+|nuORF ENST00000481603.1_1_11:5631742-5632569:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.7774047851562 2 592.777805 1183.54106 0.07155 4.2413E-05 0.89543 0.00053079 0.96698 0.0005732 592.778376300052 38.021 0.20213 37.749 37.66 37.862 -0.27133 15 9 2 0 0 0 0.094149 1 20021 20021 34.402 23.578 1 2193800 56813 3572 37965 38822 66269 66269 -0.04337213330609302 RYQPQSGYW 9 Unmodified _RYQPQSGYW_ 0 0 0 ENST00000481603.1_1_11:5631742-5632569:+|nuORF;nc|ENSG00000121236|Q9C030-3|TRIM6;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6 ENST00000481603.1_1_11:5631742-5632569:+|nuORF ENST00000481603.1_1_11:5631742-5632569:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 592.777805 1183.54106 0.68118 0.00040379 -0.31951 -0.0001894 0.36167 0.00021439 592.777615102902 42.035 0.29143 37.35 37.186 37.477 -4.6846 -0.1997 -0.00032639 NaN 34.402 32 17 2 NaN NaN NaN NaN 0 NaN NaN 0 11117000 56814 3572 37965 38822 -0.04337213330609302 RYQPRFHVV 9 Unmodified _RYQPRFHVV_ 0 0 0 nc|ENSG00000184058|O43435-2|TBX1;ENSG00000167800|ENST00000335385|TBX10;nc|ENSG00000184058|O43435|TBX1;nc|ENSG00000184058|O43435-3|TBX1;ENSG00000184058|ENST00000649276|TBX1 nc|ENSG00000184058|O43435-2|TBX1 nc|ENSG00000184058|O43435-2|TBX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2247314453125 3 401.22448 1200.65161 NaN NaN NaN NaN NaN NaN NaN 28.704 1 28.733 28.233 29.233 0.029564 0 0 0 0.41144 1 14952 14952 19.362 10.61 1 56815 7672 37966 38823 66270 66270 0.05931051448260405 RYQQQQRRRRE 11 Unmodified _RYQQQQRRRRE_ 0 0 0 ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8;ENST00000597643.5_1_19:17434328-17439993:-|nuORF ENSG00000074855|ENST00000159087|ANO8 ENSG00000074855|ENST00000159087|ANO8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 802.43505859375 2 802.435452 1602.85635 NaN NaN NaN NaN NaN NaN NaN 91.803 1 91.322 90.822 91.822 -0.48092 0 0 0 0.9435 1 50181 50181 0 0 1 56816 1137 37967 38824 66271 66271 0.07903758520683368 RYQQVLAEW 9 Unmodified _RYQQVLAEW_ 0 0 0 ENSG00000141258|ENST00000268989|SGSM2;nc|ENSG00000141258|O43147-5|SGSM2;nc|ENSG00000141258|O43147|SGSM2;ENST00000574857.1_1_17:2276624-2276924:+|nuORF ENSG00000141258|ENST00000268989|SGSM2 ENSG00000141258|ENST00000268989|SGSM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.808349609375 2 596.809105 1191.60366 0.1223 7.2989E-05 -0.81883 -0.00048869 -0.69653 -0.0004157 596.8084174568548 54.711 0.21627 54.245 54.104 54.321 -0.46664 13 10 2 0 0 0 0.19127 1 29669 29669 24.021 10.978 1 2239100 56817 5310 37968 38825 66272 66272 0.015519327375614012 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(50)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.8808288574219 3 453.880273 1358.61899 -0.59829 -0.00027155 0.98855 0.00044868 0.39026 0.00017713 453.8808338360051 36.356 0.32578 36.107 35.927 36.253 -0.2497 52 14 5 0 0 0 0.040733 1 19026 19026 49.527 42.05 1 44206000 56818 349 37969 38826 66273 66273 41 -0.045975237369248134 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(42)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.3173217773438 2 680.316771 1358.61899 -0.53238 -0.00036219 0.88543 0.00060237 0.35305 0.00024019 680.3173431365836 36.36 0.24176 36.11 35.952 36.193 -0.2497 33 10 4 0 0 0 0.062454 1 19044 19044 41.956 27.55 1 7798700 56819 349 37969 38826 66274 66274 41 -0.045975237369248134 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(65)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.8804321289062 3 453.880273 1358.61899 0.18511 8.402E-05 -0.50051 -0.00022717 -0.31539 -0.00014315 453.8801215552647 35.958 0.59044 35.983 35.806 36.396 0.024967 89 26 6 0 0 0 0.018061 2 18987 18987;19094 65.474 56.722 1 132990000 56820 349 37969 38826 66275;66276 66275 41 -0.045975237369248134 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(83)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.31689453125 2 680.316771 1358.61899 0.053641 3.6493E-05 -0.21171 -0.00014403 -0.15807 -0.00010754 680.3167600714996 35.975 0.32354 36 35.845 36.168 0.024967 50 14 4 0 0 0 0.0094097 2 19001 19001;19106 82.529 58.74 1 21199000 56821 349 37969 38826 66277;66278 66277 41 -0.045975237369248134 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(53)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.8796997070312 3 453.880273 1358.61899 0.71698 0.00032542 -0.24218 -0.00010992 0.4748 0.0002155 453.8803492290977 39.632 0.59104 35.181 34.858 35.449 -4.4509 111 36 5 0 0 0 0.033747 1 23459 23459 53.317 42.418 1 222790000 56822 349 37969 38826 66279 66279 41 -0.045975237369248134 RYQQWMERF 9 Oxidation (M) _RYQQWM(Oxidation (M))ERF_ RYQQWM(1)ERF RYQQWM(120)ERF 0 0 1 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.3178100585938 2 680.316771 1358.61899 0.85822 0.00058386 -0.12164 -8.2753E-05 0.73658 0.00050111 680.3168428697054 39.657 0.40457 35.206 34.997 35.402 -4.4509 81 25 4 0 0 0 0.0047067 2 23485 23485;23621 118.07 91.8 1 66445000 56823 349 37969 38826 66280;66281 66280 41 -0.045975237369248134 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.5486755371094 3 448.548635 1342.62407 1.4318 0.00064223 -0.26744 -0.00011996 1.1643 0.00052227 448.5486903108115 46.454 0.34806 46.421 46.224 46.572 -0.033421 49 16 4 0 0 0 0.0090524 1 24954 24954 69.338 57.111 1 17304000 56824 349 37969 38827 66282 66282 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.3202514648438 2 672.319314 1342.62407 1.2977 0.00087247 -0.87327 -0.00058712 0.42442 0.00028535 672.3191005547582 46.477 0.28598 46.443 46.286 46.572 -0.033417 35 13 4 0 0 0 0.040683 1 24973 24973 49.554 37.314 1 5199300 56825 349 37969 38827 66283 66283 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5498657226562 3 448.548635 1342.62407 1.1382 0.00051055 -0.10918 -4.8973E-05 1.029 0.00046157 448.88278895099995 51.087 0.35618 45.438 45.248 45.605 -5.649 33 21 2 0 0 0 0.0082353 1 32084 32084 78.06 62.522 1 45438000 56826 349 37969 38827 66284 66284 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8196411132812 2 672.319314 1342.62407 0.76543 0.00051461 -0.26298 -0.0001768 0.50245 0.00033781 672.3193416538713 51.072 0.32342 45.423 45.248 45.572 -5.649 27 19 2 0 0 0 0.0061223 1 32118 32118 114.2 86.573 1 29087000 56827 349 37969 38827 66285 66285 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5491027832031 3 448.548635 1342.62407 1.0252 0.00045986 -0.51363 -0.00023039 0.51158 0.00022947 448.5486144673727 72.669 0.61273 66.493 66.22 66.833 -6.1757 61 31 3 0 0 0 0.0090524 1 47573 47573 69.338 58.273 1 13768000 56828 349 37969 38827 66286 66286 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5494995117188 3 448.548635 1342.62407 1.0496 0.00047079 -0.34722 -0.00015575 0.70236 0.00031504 448.5487146339728 73.876 1.1057 67.701 67.39 68.495 -6.1757 128 56 3 0 0 0 0.0044708 5 48578 48212;48331;48443;48578;48696 96.936 80.661 1 28600000 56829 349 37969 38827 66287;66288;66289;66290;66291 66290 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5484619140625 3 448.548635 1342.62407 1.1431 0.00051272 -0.69562 -0.00031202 0.44744 0.0002007 448.8831580512132 74.816 0.096054 68.64 68.606 68.702 -6.1757 6 4 2 0 0 0 0.11784 1 48936 48936 23.801 19.085 1 5133000 56830 349 37969 38827 66292 66292 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 448.5492553710938 3 448.548635 1342.62407 NaN NaN NaN NaN NaN NaN NaN 73.152 1 66.976 66.476 67.476 -6.1757 0 0 0 0.0084204 1 47848 47848 78.06 65.833 1 56831 349 37969 38827 66293 66293 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 448.548828125 3 448.548635 1342.62407 NaN NaN NaN NaN NaN NaN NaN 73.344 1 67.168 66.668 67.668 -6.1757 0 0 0 0.02218 1 47968 47968 61.09 41.464 1 56832 349 37969 38827 66294 66294 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 672.319580078125 2 672.319314 1342.62407 NaN NaN NaN NaN NaN NaN NaN 73.742 1 67.566 67.066 68.066 -6.1757 0 0 0 0.0053534 1 48215 48215 103.42 76.196 1 56833 349 37969 38827 66295 66295 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 672.320068359375 2 672.319314 1342.62407 NaN NaN NaN NaN NaN NaN NaN 74.223 1 68.047 67.547 68.547 -6.1757 0 0 0 0.023462 1 48527 48527 74.2 52.61 1 56834 349 37969 38827 66296 66296 -0.03353219874293245 RYQQWMERF 9 Unmodified _RYQQWMERF_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF;ENST00000487229.6_1_17:12905763-12906899:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MSMS AL20221201_MKP_PDAC_01 4 672.3193969726562 2 672.319314 1342.62407 NaN NaN NaN NaN NaN NaN NaN 74.418 1 68.242 67.742 68.742 -6.1757 0 0 0 0.0083006 1 48651 48651 96.367 77.005 1 56835 349 37969 38827 66297 66297 -0.03353219874293245 RYQRHYYYYRN 11 Unmodified _RYQRHYYYYRN_ 0 0 0 REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 841.4033203125 2 841.402755 1680.79096 NaN NaN NaN NaN NaN NaN NaN 47.205 1 46.852 46.352 47.352 -0.3526 0 0 0 0.9435 1 25298 25298 0 0 1 + 56836 20508 37970 38828 66298 66298 -0.022206557250001424 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1990661621094 3 423.863499 1268.56867 0.58518 0.00024803 0.43407 0.00018399 1.0192 0.00043202 424.1981183133132 28.78 0.20811 28.718 28.602 28.81 -0.062159 13 8 2 0 0 0 0.035736 1 14859 14859 47.732 38.98 1 4072500 56837 7581 37971 38829 66299 66299 -0.0548731007038441 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.7918701171875 2 635.291611 1268.56867 0.27847 0.00017691 -0.93247 -0.00059239 -0.654 -0.00041548 635.792106136666 28.785 0.1414 28.723 28.644 28.786 -0.06216 8 5 2 0 0 0 0.28721 1 14872 14872 28.234 13.395 1 1807000 56838 7581 37971 38829 66300 66300 -0.0548731007038441 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8638610839844 3 423.863499 1268.56867 0.13899 5.8911E-05 0.57198 0.00024244 0.71096 0.00030135 423.8635833723035 28.612 0.16095 28.641 28.52 28.681 0.029564 13 5 3 0 0 0 0.027759 1 14890 14890 51.488 43.202 1 3333800 56839 7581 37971 38829 66301 66301 -0.0548731007038441 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.29150390625 2 635.291611 1268.56867 0.099191 6.3015E-05 0.61445 0.00039036 0.71365 0.00045337 635.2917633481818 28.597 0.18606 28.627 28.544 28.73 0.029564 10 6 2 0 0 0 0.45406 1 14910 14910 18.721 8.5378 1 2166100 56840 7581 37971 38829 66302 66302 -0.0548731007038441 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.7930908203125 2 635.291611 1268.56867 0.46831 0.00029751 0.19638 0.00012476 0.66468 0.00042227 635.793060631093 31.789 0.22651 28.093 28 28.226 -3.6958 20 12 2 0 0 0 0.0042881 1 18018 18018 100.71 58.869 1 14720000 56841 7581 37971 38829 66303 66303 -0.0548731007038441 RYQSFGNNHF 10 Unmodified _RYQSFGNNHF_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8636169433594 3 423.863499 1268.56867 0.89433 0.00037908 0.18155 7.6954E-05 1.0759 0.00045603 423.8635226768217 31.771 0.28746 28.075 27.983 28.271 -3.6958 34 15 3 0 0 0 0.012821 1 18028 18028 62.869 51.237 1 27399000 56842 7581 37971 38829 66304 66304 -0.0548731007038441 RYQSRGDGKG 10 Unmodified _RYQSRGDGKG_ 0 0 0 ENST00000464262.6_1_7:36910010-37025590:-|nuORF ENST00000464262.6_1_7:36910010-37025590:-|nuORF ENST00000464262.6_1_7:36910010-37025590:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.5465393066406 3 375.191616 1122.55302 NaN NaN NaN NaN NaN NaN NaN 19.3 1 16.643 16.143 17.143 -2.6564 0 0 0 0.94014 1 10212 10212 3.3196 0.58445 1 56843 13713 37972 38830 66305 66305 -0.003355965874334288 RYQTFLQLL 9 Unmodified _RYQTFLQLL_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3375854492188 2 591.337498 1180.66044 -0.30357 -0.00017951 0.96806 0.00057245 0.66449 0.00039294 591.338092994413 85.52 0.31117 85.582 85.39 85.701 0.061638 20 11 2 0 0 0 0.0082353 1 47304 47304 96.111 31.875 1 20105000 56844 3669 37973 38831 66306 66306 0.0773398029409691 RYQTFLQLL 9 Unmodified _RYQTFLQLL_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3377075195312 2 591.337498 1180.66044 NaN NaN NaN NaN NaN NaN NaN 85.649 1 85.711 85.211 86.211 0.061638 0 0 0 0.19623 1 47413 47413 31.268 1.4278 1 56845 3669 37973 38831 66307 66307 0.0773398029409691 RYQTFLQLL 9 Unmodified _RYQTFLQLL_ 0 0 0 ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT ENSG00000122952|ENST00000373944|ZWINT MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.3377075195312 2 591.337498 1180.66044 0.79722 0.00047143 -0.32986 -0.00019506 0.46736 0.00027637 591.3373474724824 99.252 0.16904 93.077 92.99 93.159 -6.1757 22 9 3 0 0 0 0.020973 1 66038 66038 62.573 10.304 1 128280000 56846 3669 37973 38831 66308 66308 0.0773398029409691 RYQTKFRHL 9 Unmodified _RYQTKFRHL_ 0 0 0 ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;nc|ENSG00000121289|Q96ST8-3|CEP89 ENSG00000121289|ENST00000305768|CEP89 ENSG00000121289|ENST00000305768|CEP89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.9029235839844 3 416.903518 1247.68872 -0.046656 -1.9451E-05 0.27719 0.00011556 0.23053 9.6108E-05 416.9036497456118 17.284 0.14207 17.289 17.225 17.367 0.0050564 33 10 4 0 0 0 0.011671 1 8702 8702 69.338 57.82 1 11268000 56847 3576 37974 38832 66309 66309 0.0747872299402843 RYQTKFRHL 9 Unmodified _RYQTKFRHL_ 0 0 0 ENSG00000121289|ENST00000305768|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;nc|ENSG00000121289|Q96ST8-3|CEP89 ENSG00000121289|ENST00000305768|CEP89 ENSG00000121289|ENST00000305768|CEP89 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.9043884277344 3 416.903518 1247.68872 0.98913 0.00041237 0.48182 0.00020087 1.471 0.00061325 416.9036219009702 18.46 0.39131 15.838 15.638 16.03 -2.6215 138 36 5 0 0 0 0.017075 2 9648 9648;9748 61.09 49.572 1 62719000 56848 3576 37974 38832 66310;66311 66310 0.0747872299402843 RYQTLYARF 9 Unmodified _RYQTLYARF_ 0 0 0 ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF ENSG00000182628|ENST00000330137|SKA2 ENSG00000182628|ENST00000330137|SKA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3264770507812 2 609.324922 1216.63529 0.065868 4.0135E-05 -0.49037 -0.0002988 -0.42451 -0.00025866 609.3243965298814 41.394 0.27357 41.392 41.241 41.515 -0.0017929 28 12 3 0 0 0 0.0093064 1 22087 22087 83.429 67.28 1 13718000 56849 9074 37975 38833 66312 66312 0.035639254914940466 RYQTLYARF 9 Unmodified _RYQTLYARF_ 0 0 0 ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF ENSG00000182628|ENST00000330137|SKA2 ENSG00000182628|ENST00000330137|SKA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5522766113281 3 406.552374 1216.63529 -0.30663 -0.00012466 -0.71866 -0.00029217 -1.0253 -0.00041684 406.55224541346274 41.386 0.21227 41.384 41.279 41.491 -0.0017929 15 9 3 0 0 0 0.036857 1 22129 22129 40.725 27.852 1 3790400 56850 9074 37975 38833 66313 66313 0.035639254914940466 RYQTLYARF 9 Unmodified _RYQTLYARF_ 0 0 0 ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF ENSG00000182628|ENST00000330137|SKA2 ENSG00000182628|ENST00000330137|SKA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5525207519531 3 406.552374 1216.63529 0.74251 0.00030187 0.37102 0.00015084 1.1135 0.00045271 406.55246016723225 45.551 0.26818 40.596 40.477 40.745 -4.9549 30 17 2 0 0 0 0.036857 2 27930 27930;28078 40.725 33.248 1 17980000 56851 9074 37975 38833 66314;66315 66314 0.035639254914940466 RYQTLYARF 9 Unmodified _RYQTLYARF_ 0 0 0 ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF ENSG00000182628|ENST00000330137|SKA2 ENSG00000182628|ENST00000330137|SKA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.324462890625 2 609.324922 1216.63529 0.47077 0.00028685 0.17475 0.00010648 0.64552 0.00039333 609.3251697349866 45.595 0.32351 40.64 40.45 40.774 -4.9549 37 21 2 0 0 0 0.030212 1 27941 27941 55.235 33.698 1 23841000 56852 9074 37975 38833 66316 66316 0.035639254914940466 RYQTQPVTL 9 Unmodified _RYQTQPVTL_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3043212890625 2 553.303655 1104.59276 0.71179 0.00039383 -0.053903 -2.9825E-05 0.65788 0.00036401 553.303654697836 36.925 0.38487 36.925 36.732 37.117 0 57 18 4 0 0 0 0.020973 1 19580 19580 62.573 22.623 1 74575000 56853 9939 37976 38834 66317 66317 0.044645303632933064 RYQTQPVTL 9 Unmodified _RYQTQPVTL_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3043212890625 2 553.303655 1104.59276 0.32763 0.00018128 -0.075474 -4.176E-05 0.25216 0.00013952 553.3036106305447 41.484 0.60271 36.876 36.599 37.202 -4.6079 104 39 3 0 0 0 0.0087873 3 24770 24770;24903;25043 103.35 51.724 1 343330000 56854 9939 37976 38834 66318;66319;66320 66318 0.044645303632933064 RYQVEYLL 8 Unmodified _RYQVEYLL_ 0 0 0 REV__nc|ENSG00000292363|Q9HC73-2|CRLF2 REV__nc|ENSG00000292363|Q9HC73-2|CRLF2 MSMS AL20221201_MKP_PDAC_01 4 361.8664855957031 3 361.865958 1082.57605 NaN NaN NaN NaN NaN NaN NaN 3.0262 1 0.54421 0.044207 1.0442 -2.482 0 0 0 0.97444 1 1539 1539 1.6526 0.45928 1 + 56855 24240 37977 38835 66321 66321 0.038060294773458736 RYQWKQEGDM 10 Unmodified _RYQWKQEGDM_ 0 0 0 REV__nc|ENSG00000215811|A8MVZ5|BTNL10P REV__nc|ENSG00000215811|A8MVZ5|BTNL10P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.8745422363281 3 447.539916 1339.59792 0.24438 0.00010937 0.12557 5.6197E-05 0.36995 0.00016557 447.54017548148397 35.906 0.3103 35.931 35.786 36.096 0.024971 62 14 5 0 0 0 0.66569 1 19073 19073 3.5871 0 1 38962000 + 56856 29944 37978 38836 66322 66322 -0.05829533836435985 RYQYALKKF 9 Unmodified _RYQYALKKF_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.4859008789062 3 406.232752 1215.67643 0.67964 0.00027609 -0.75855 -0.00030815 -0.078914 -3.2057E-05 406.23246684522127 47.232 0.11858 47.199 47.123 47.242 -0.033417 8 5 2 0 0 0 0.2188 1 25428 25428 1.0715 0 1 963000 56857 8044 37979 38837 66323 66323 0.07721686530953775 RYRAENIVLL 10 Unmodified _RYRAENIVLL_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000101350|O15066-2|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2474670410156 3 416.247062 1245.71936 0.21434 8.922E-05 0.00020311 8.4542E-08 0.21455 8.9305E-05 416.2469538510132 50.959 0.2607 50.905 50.766 51.026 -0.053871 32 12 3 0 0 0 0.49559 1 27538 27538 16.566 0.82726 1 3643000 56858 1953 37980 38838 66324 66324 0.10632456588405148 RYRDAIAEI 9 Unmodified _RYRDAIAEI_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000118007|Q8WVM7-2|STAG1 ENSG00000101972|ENST00000371145|STAG2;ENSG00000118007|ENST00000383202|STAG1 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.5368041992188 3 369.536612 1105.58801 -0.60348 -0.00022301 1.8972 0.00070107 1.2937 0.00047806 369.5373879393256 34.56 0.39098 34.56 34.402 34.793 0 33 17 3 0 0 0 0.20428 1 18228 18228 16.566 5.7664 1 3734200 56859 2002;3346 37981 38839 66325 66325 0.03943646220500341 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827819824219 3 435.219172 1302.63569 0.22104 9.6199E-05 0.1967 8.5608E-05 0.41774 0.00018181 435.21975447395124 52.625 0.23927 52.625 52.489 52.728 0 21 10 3 0 0 0 0.23993 1 29161 29161 1.7423 0 1 996870 56860 9973 37982 38840 66326 66326 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.219970703125 3 435.219172 1302.63569 0.33038 0.00014379 -0.059152 -2.5744E-05 0.27123 0.00011804 435.21922643378326 53.14 0.49775 52.689 52.381 52.878 -0.45173 67 25 4 0 0 0 0.11824 2 28704 28704;28817 31.636 12.492 1 19738000 56861 9973 37982 38840 66327;66328 66327 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.8270263671875 2 652.325119 1302.63569 0.3345 0.0002182 -3.6185 -0.0023604 -3.284 -0.0021422 652.3227932502557 53.21 0.36881 52.759 52.574 52.943 -0.45173 35 18 2 0 0 0 0.48505 1 28743 28743 17.113 4.8722 1 2393800 56862 9973 37982 38840 66329 66329 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2195434570312 3 435.219172 1302.63569 0.7421 0.00032297 -0.44014 -0.00019156 0.30195 0.00013142 435.21909694459777 52.81 0.26177 52.746 52.583 52.845 -0.063423 31 12 3 0 0 0 0.17714 1 28595 28595 25.997 11.159 1 5706200 56863 9973 37982 38840 66330 66330 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3256225585938 2 652.325119 1302.63569 0.95301 0.00062168 1.0916 0.0007121 2.0447 0.0013338 652.3260582605944 83.773 0.75389 77.597 77.065 77.818 -6.1757 56 39 2 0 0 0 0.078742 3 54978 54810;54978;55118 51.415 24.991 1 11281000 56864 9973 37982 38840 66331;66332;66333 66332 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2197570800781 3 435.219172 1302.63569 1.1033 0.00048016 0.11506 5.0075E-05 1.2183 0.00053023 435.21913559104297 83.577 0.96924 77.401 76.941 77.91 -6.1757 109 50 3 0 0 0 0.17714 3 55103 54834;54962;55103 28.234 11.959 1 16918000 56865 9973 37982 38840 66334;66335;66336 66336 -0.003526995793208698 RYRDISAEFF 10 Unmodified _RYRDISAEFF_ 0 0 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MSMS AL20221201_MKP_PDAC_01 4 435.2200927734375 3 435.219172 1302.63569 NaN NaN NaN NaN NaN NaN NaN 58.514 1 52.44 51.94 52.94 -6.0745 0 0 0 0.49971 1 37496 37496 22.775 11.144 1 56866 9973 37982 38840 66337 66337 -0.003526995793208698 RYRDRLQYF 9 Unmodified _RYRDRLQYF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91017136-91017370:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.5668334960938 3 439.566794 1315.67855 0.086957 3.8223E-05 -0.7761 -0.00034115 -0.68914 -0.00030292 439.5667224769136 32.21 0.40734 32.24 32.033 32.44 0.029747 68 17 6 0 0 0 0.15471 1 16834 16834 26.021 15.122 1 21091000 56867 5256 37983 38841 66338 66338 0.03334115268785354 RYRDYYRQYNR 11 Unmodified _RYRDYYRQYNR_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 826.9054565429688 2 826.905662 1651.79677 NaN NaN NaN NaN NaN NaN NaN 88.235 1 88.288 87.788 88.788 0.053352 0 0 0 0.9435 1 49084 49084 0 0 1 56868 10507 37984 38842 66339 66339 -0.003055572133689566 RYREFYQCDF 10 Unmodified _RYREFYQCDF_ 0 0 0 ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-2|HARS1 ENSG00000170445|ENST00000504156|HARS1 ENSG00000170445|ENST00000504156|HARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.8153076171875 2 713.814061 1425.61357 -0.010241 -7.31E-06 1.7558 0.0012533 1.7455 0.001246 713.8150594790646 89.296 0.21684 89.296 89.167 89.384 0 21 9 3 0 0 0 0.69064 1 49382 49382 3.9444 0.66309 1 943850 56869 7986 37985 38843 66340 66340 -0.08221247319374925 RYREFYQCDF 10 Unmodified _RYREFYQCDF_ 0 0 0 ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-2|HARS1 ENSG00000170445|ENST00000504156|HARS1 ENSG00000170445|ENST00000504156|HARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.8138427734375 2 713.814061 1425.61357 -0.010189 -7.2734E-06 1.6736 0.0011947 1.6634 0.0011874 714.3170738760094 89.523 0.27038 89.523 89.362 89.632 0 38 16 3 0 0 0 0.69064 1 49495 49495 3.9444 0 1 1031200 56870 7986 37985 38843 66341 66341 -0.08221247319374925 RYREFYQCDF 10 Unmodified _RYREFYQCDF_ 0 0 0 ENSG00000170445|ENST00000504156|HARS1;nc|ENSG00000170445|P12081-2|HARS1 ENSG00000170445|ENST00000504156|HARS1 ENSG00000170445|ENST00000504156|HARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.814453125 2 713.814061 1425.61357 -0.010117 -7.2218E-06 1.8159 0.0012962 1.8058 0.001289 714.3170029700525 89.882 0.35876 89.882 89.69 90.048 0 56 25 3 0 0 0 0.69064 1 49792 49792 3.9444 0.66309 1 1363400 56871 7986 37985 38843 66342 66342 -0.08221247319374925 RYREWERKYRE 11 Unmodified _RYREWERKYRE_ 0 0 0 nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3724365234375 3 557.62185 1669.84372 NaN NaN NaN NaN NaN NaN NaN 104.8 1 104.75 104.25 105.25 -0.048737 0 0 0 0.9435 1 58184 58184 0 0 1 56872 3628 37986 38844 66343 66343 0.03559302337748704 RYRGDYDRF 9 Unmodified _RYRGDYDRF_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.5352783203125 3 416.535383 1246.58432 -0.50006 -0.00020829 -0.065215 -2.7164E-05 -0.56528 -0.00023546 416.53528697325487 20.666 0.22758 20.666 20.542 20.77 0 38 16 4 0 0 0 0.51371 1 10362 10362 6.6304 3.5581 1 3926100 56873 10507 37987 38845 66344 66344 -0.02911023553360792 RYRGDYDRF 9 Unmodified _RYRGDYDRF_ 0 0 0 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 ENSG00000214753|ENST00000301785|HNRNPUL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5353393554688 3 416.535383 1246.58432 0.48649 0.00020264 -0.22239 -9.2633E-05 0.2641 0.00011001 416.53522474883044 22.894 0.37736 20.116 19.91 20.287 -2.7784 76 26 4 0 0 0 0.17124 2 12360 12248;12360 25.997 15.098 1 34682000 56874 10507 37987 38845 66345;66346 66346 -0.02911023553360792 RYRHSGVIF 9 Unmodified _RYRHSGVIF_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8394470214844 3 378.87708 1133.60941 -0.36412 -0.00013796 -0.85987 -0.00032579 -1.224 -0.00046374 378.87686986821825 23.896 0.24549 23.896 23.771 24.016 0 20 11 2 0 0 0 0.21806 1 12234 12234 2.7352 0.89096 1 1016800 + 56875 20626 37988 38846 66347 66347 0.04795076039886226 RYRKDFGIEIY 11 Unmodified _RYRKDFGIEIY_ 0 0 0 REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2612915039062 3 487.261259 1458.76195 -0.074864 -3.6478E-05 -0.40507 -0.00019737 -0.47993 -0.00023385 487.2608729824829 56.244 0.26804 56.175 56.036 56.304 -0.068741 25 13 3 0 0 0 0.69316 1 30588 30588 2.2527 0 1 6707000 + 56876 23935 37989 38847 66348 66348 0.05091806925997844 RYRKEMEQI 9 Unmodified _RYRKEMEQI_ 0 0 0 nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;ENSG00000006611|ENST00000005226|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C nc|ENSG00000006611|Q9Y6N9-4|USH1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.2207641601562 3 418.220407 1251.63939 1.1728 0.00049047 0.22195 9.2825E-05 1.3947 0.0005833 418.2209195701634 19.053 0.24756 16.432 16.259 16.506 -2.6215 32 15 3 0 0 0 0.30202 1 10022 10022 12.175 0 1 5496100 56877 16012 37990 38848 66349 66349 0.023636469229359136 RYRKEQTLL 9 Unmodified _RYRKEQTLL_ 0 0 0 nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.9036865234375 3 402.903295 1205.68806 -0.088335 -3.5591E-05 0.53302 0.00021476 0.44469 0.00017917 402.9034254440464 19.897 0.16492 19.905 19.801 19.966 0.0078487 13 8 2 0 0 0 0.50598 1 10136 10136 7.1017 0.47827 1 1220500 56878 3357 37991 38849 66350 66350 0.09343883554333843 RYRKKKRILKS 11 Unmodified _RYRKKKRILKS_ 0 0 0 nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140 nc|ENSG00000079263|Q13342-3|SP140 nc|ENSG00000079263|Q13342-3|SP140 MSMS AL20221201_MKP_PDAC_01 4 738.4872436523438 2 738.485894 1474.95723 NaN NaN NaN NaN NaN NaN NaN 98.66 1 92.484 91.984 92.984 -6.1757 0 0 0 0.9435 1 65479 65479 0 0 1 56879 1268 37992 38850 66351 66351 0.23875442241501332 RYRKVVIL 8 Unmodified _RYRKVVIL_ 0 0 0 ENSG00000167550|ENST00000301068|RHEBL1;nc|ENSG00000167550|Q8TAI7-2|RHEBL1 ENSG00000167550|ENST00000301068|RHEBL1 ENSG00000167550|ENST00000301068|RHEBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8458251953125 2 523.845294 1045.67603 1.6421 0.00086021 -0.90486 -0.00047401 0.73725 0.0003862 523.844894535889 106.31 0.98497 100.13 99.666 100.65 -6.1757 386 160 3 0 0 0 0.80975 1 70998 70998 0.79363 0 1 11181000 56880 7629 37993 38851 66352 66352 0.15502311601790097 RYRLCYNRF 9 Unmodified _RYRLCYNRF_ 0 0 0 REV__nc|ENSG00000103222|P33527-6|ABCC1 REV__nc|ENSG00000103222|P33527-6|ABCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8876953125 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 35.693 1 35.718 35.218 36.218 0.024967 0 0 0 0.85798 1 18882 18882 0.23584 0 1 + 56881 18292 37994 38852 66353 66353 0.011907902252232816 RYRLCYNRF 9 Unmodified _RYRLCYNRF_ 0 0 0 REV__nc|ENSG00000103222|P33527-6|ABCC1 REV__nc|ENSG00000103222|P33527-6|ABCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8882751464844 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 52.3 1 52.241 51.741 52.741 -0.058918 0 0 0 0.84564 1 28330 28330 1.0715 0 1 + 56882 18292 37994 38852 66354 66354 0.011907902252232816 RYRLLRDLPRL 11 Unmodified _RYRLLRDLPRL_ 0 0 0 ENSG00000163701|ENST00000383814|IL17RE;ENST00000454190.6_2_3:9956219-9957488:+|nuORF;nc|ENSG00000163701|Q8NFR9-2|IL17RE ENSG00000163701|ENST00000383814|IL17RE ENSG00000163701|ENST00000383814|IL17RE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 735.9536743164062 2 735.954427 1469.8943 NaN NaN NaN NaN NaN NaN NaN 82.062 1 82.125 81.625 82.625 0.062004 0 0 0 0.94307 1 45386 45386 0.30703 0 1 56883 7053 37995 38853 66355 66355 0.17814876453439865 RYRPDMPCF 9 Carbamidomethyl (C),Oxidation (M) _RYRPDM(Oxidation (M))PC(Carbamidomethyl (C))F_ RYRPDMPC(1)F RYRPDM(1)PCF RYRPDMPC(75)F RYRPDM(75)PCF 0 1 1 ENSG00000126787|ENST00000247191|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;nc|ENSG00000126787|Q15398-1|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.2796020507812 2 629.2788 1256.54305 0.47137 0.00029662 0.3738 0.00023523 0.84517 0.00053185 629.2787734511995 31.817 0.24669 28.121 28 28.246 -3.6958 24 13 3 0 0 0 0.011968 1 18070 18070 74.929 57.816 1 17092000 56884 3970 37996 38854 66356 66356 400 709 -0.07496243908690303 RYRPDMPCF 9 Carbamidomethyl (C) _RYRPDMPC(Carbamidomethyl (C))F_ RYRPDMPC(1)F RYRPDMPC(93)F 0 1 0 ENSG00000126787|ENST00000247191|DLGAP5;nc|ENSG00000126787|Q15398-3|DLGAP5;nc|ENSG00000126787|Q15398-1|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 ENSG00000126787|ENST00000247191|DLGAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2817993164062 2 621.281343 1240.54813 0.39608 0.00024607 -1.299 -0.00080707 -0.90296 -0.00056099 621.2812536975154 45.572 0.77175 40.617 40.363 41.135 -4.9549 120 51 4 0 0 0 0.0082475 2 28018 27869;28018 92.653 73.291 1 43067000 56885 3970 37996 38855 66357;66358 66358 400 -0.06251940046081472 RYRPFHQWD 9 Unmodified _RYRPFHQWD_ 0 0 0 REV__ENSG00000196914|ENST00000397843|ARHGEF12 REV__ENSG00000196914|ENST00000397843|ARHGEF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.5483093261719 3 435.547623 1303.62104 0.26567 0.00011571 0.60286 0.00026257 0.86853 0.00037829 435.5479996666402 18.195 0.99931 18.201 17.935 18.935 0.0060482 221 64 7 0 0 0 0.58865 1 9099 9099 1.0715 0.3738 1 1164400000 + 56886 23880 37997 38856 66359 66359 -0.018627269367698318 RYRPGTVAL 9 Unmodified _RYRPGTVAL_ 0 0 0 ENSG00000203852|ENST00000403683|H3C15;ENSG00000203811|ENST00000369158|H3C14;ENSG00000183598|ENST00000331491|H3C13;ENSG00000188375|ENST00000340398|H3-5;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000274750|ENST00000614911|H3C6;ENSG00000273983|ENST00000614378|H3C8;ENSG00000197409|ENST00000356476|H3C4;ENSG00000197153|ENST00000359303|H3C12 ENSG00000203852|ENST00000403683|H3C15;ENSG00000278828|ENST00000685041|H3C10 ENSG00000278828|ENST00000685041|H3C10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.80029296875 2 516.801083 1031.58761 0.21853 0.00011294 -0.33769 -0.00017452 -0.11916 -6.1583E-05 516.8009377682198 28.805 0.16439 28.835 28.707 28.871 0.030106 12 6 2 0 0 0 0.1773 1 14990 14990 25.399 6.1423 1 5861800 56887 9164;9917 37998 38857 66360 66360 0.07308271291344681 RYRPQHIFF 9 Unmodified _RYRPQHIFF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000584031.5_1_17:61511765-61513383:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8964233398438 3 421.896363 1262.66726 0.40039 0.00016892 -0.34208 -0.00014432 0.05831 2.4601E-05 421.89619386428694 40.435 0.46508 40.44 40.149 40.614 0.0050583 75 21 6 0 0 0 0.14602 2 21500 21500;21608 20.415 12.937 1 256800000 56888 383 37999 38858 66361;66362 66361 0.04643337965308092 RYRPQHIFF 9 Unmodified _RYRPQHIFF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000584031.5_1_17:61511765-61513383:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.3406982421875 2 632.340907 1262.66726 0.4544 0.00028734 -0.28656 -0.00018121 0.16784 0.00010613 632.3405292103698 40.455 0.25321 40.46 40.295 40.549 0.0050583 25 11 3 0 0 0 0.12841 1 21534 21534 30.225 18.73 1 5295800 56889 383 37999 38858 66363 66363 0.04643337965308092 RYRPQHIFF 9 Unmodified _RYRPQHIFF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000584031.5_1_17:61511765-61513383:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8970336914062 3 421.896363 1262.66726 0.84836 0.00035792 0.65223 0.00027518 1.5006 0.0006331 421.8965274373311 44.816 0.33186 39.964 39.801 40.133 -4.852 48 23 3 0 0 0 0.2001 2 27523 27377;27523 21.537 10.019 1 22040000 56890 383 37999 38858 66364;66365 66365 0.04643337965308092 RYRPQHIFF 9 Unmodified _RYRPQHIFF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000584031.5_1_17:61511765-61513383:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8971252441406 3 421.896363 1262.66726 1.2016 0.00050693 0.20535 8.6636E-05 1.4069 0.00059357 421.89646276850164 90.054 0.62717 83.878 83.544 84.171 -6.1757 124 35 5 0 0 0 0.14602 3 59459 59332;59459;59584 21.537 21.537 1 363060000 56891 383 37999 38858 66366;66367;66368 66367 0.04643337965308092 RYRPQHIFF 9 Unmodified _RYRPQHIFF_ 0 0 0 ENSG00000008283|ENST00000360793|CYB561;ENST00000584031.5_1_17:61511765-61513383:-|nuORF ENSG00000008283|ENST00000360793|CYB561 ENSG00000008283|ENST00000360793|CYB561 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3413696289062 2 632.340907 1262.66726 0.75097 0.00047487 -0.69292 -0.00043816 0.058047 3.6706E-05 632.3402325638044 90.117 0.44007 83.941 83.67 84.11 -6.1757 60 24 3 0 0 0 0.008678 2 59511 59386;59511 88.904 60.409 1 28557000 56892 383 37999 38858 66369;66370 66370 0.04643337965308092 RYRPRRCL 8 Unmodified _RYRPRRCL_ 0 0 0 ENSG00000171405|ENST00000375501|XAGE5 ENSG00000171405|ENST00000375501|XAGE5 ENSG00000171405|ENST00000375501|XAGE5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.8523864746094 3 373.88206 1118.62435 1.7265 0.00064549 -2.3477 -0.00087777 -0.62127 -0.00023228 374.2159933893883 21.184 0.25588 18.491 18.321 18.577 -2.693 21 14 2 0 0 0 8.7369 1 11283 11283 1.6526 0 1 3954300 56893 8095 38000 38859 66371 66371 0.06978244636229647 RYRPWRRWKRR 11 Unmodified _RYRPWRRWKRR_ 0 0 0 ENST00000284061.7_2_17:54911541-54912223:+|nuORF ENST00000284061.7_2_17:54911541-54912223:+|nuORF ENST00000284061.7_2_17:54911541-54912223:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 858.4974365234375 2 858.500733 1714.98691 NaN NaN NaN NaN NaN NaN NaN 108.89 1 108.84 108.34 109.34 -0.047607 0 0 0 0.9435 1 60296 60296 0 0 1 56894 11432 38001 38860 66372 66372 0.15801819030161823 RYRQRYEKHYH 11 Unmodified _RYRQRYEKHYH_ 0 0 0 REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF REV__ENST00000600588.1_1_19:6593418-6593715:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4147338867188 2 818.416197 1634.81784 NaN NaN NaN NaN NaN NaN NaN 53.603 1 53.603 53.103 54.103 0 0 0 0 0.94165 1 29723 29723 1.3295 0.9789 1 + 56895 29250 38002 38861 66373 66373 0.025824528861903673 RYRRGGRK 8 Unmodified _RYRRGGRK_ 0 0 0 REV__nc|ENSG00000105618|Q8WWY3-4|PRPF31 REV__nc|ENSG00000105618|Q8WWY3-4|PRPF31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8155517578125 2 524.81539 1047.61623 NaN NaN NaN NaN NaN NaN NaN 8.1662 1 8.0747 7.5747 8.5747 -0.09156 0 0 0 0.97444 1 4011 4011 0 0 1 + 56896 18441 38003 38862 66374 66374 0.09432433711117483 RYRRLCKLRKL 11 Unmodified _RYRRLCKLRKL_ 0 0 0 REV__ENSG00000139620|ENST00000420613|KANSL2 REV__ENSG00000139620|ENST00000420613|KANSL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 752.9720458984375 2 752.972096 1503.92964 NaN NaN NaN NaN NaN NaN NaN 96.995 1 96.995 96.495 97.495 0 0 0 0 0.9435 1 53597 53597 0 0 1 + 56897 20419 38004 38863 66375 66375 0.19783215709594515 RYRRQELE 8 Unmodified _RYRRQELE_ 0 0 0 REV__ENSG00000079313|ENST00000170168|REXO1 REV__ENSG00000079313|ENST00000170168|REXO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3126220703125 2 575.309803 1148.60505 0.50654 0.00029142 0.56845 0.00032703 1.075 0.00061845 575.3100565554852 59.237 0.77429 59.237 59.045 59.819 0 106 33 6 0 0 0 0.31612 1 32932 32932 53.576 7.5546 1 766970000 + 56898 17645 38005 38864 66376 66376 0.03669566826351911 RYSCRFQTI 9 Unmodified _RYSCRFQTI_ 0 0 0 ENST00000429271.1_1_21:28515665-28516046:-|nuORF ENST00000429271.1_1_21:28515665-28516046:-|nuORF ENST00000429271.1_1_21:28515665-28516046:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8664245605469 3 391.865964 1172.57606 0.23512 9.2136E-05 1.3422 0.00052596 1.5773 0.0006181 391.8665433265768 46.015 0.19155 45.691 45.583 45.774 -0.32425 17 9 2 0 0 0 0.54444 1 24614 24614 2.7352 0.23671 1 4517500 56899 13218 38006 38865 66377 66377 -0.0033229379432668793 RYSDKHNCPY 10 Unmodified _RYSDKHNCPY_ 0 0 0 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.1933898925781 3 428.192628 1281.55605 0.13204 5.6539E-05 -0.23442 -0.00010038 -0.10238 -4.3837E-05 428.19250516361393 17.432 0.1834 17.437 17.323 17.507 0.0050564 15 11 2 0 0 0 0.71123 1 8765 8765 0.69767 0 1 1485600 56900 2493 38007 38866 66378 66378 -0.07346089524935451 RYSDLTTLVAF 11 Unmodified _RYSDLTTLVAF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3438110351562 2 643.342978 1284.6714 0.98462 0.00063345 -0.094543 -6.0823E-05 0.89008 0.00057262 643.3427485975161 96.149 0.17833 89.974 89.877 90.056 -6.1757 16 10 2 0 0 0 0.17638 1 63711 63711 34.222 21.179 1 8791600 56901 2860 38008 38867 66379 66379 0.04045337877687416 RYSDNWEAI 9 Unmodified _RYSDNWEAI_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2669067382812 2 577.26727 1152.51999 0.92527 0.00053413 -0.98146 -0.00056657 -0.056192 -3.2438E-05 577.2666322058719 46.322 0.31165 46.322 46.149 46.461 0 35 14 3 0 0 0 0.017075 1 25270 25270 66.457 47.2 1 15703000 56902 9906 38009 38868 66380 66380 -0.050172234301498975 RYSDNWEAI 9 Unmodified _RYSDNWEAI_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.267578125 2 577.26727 1152.51999 0.43531 0.00025129 1.8388 0.0010615 2.2741 0.0013128 577.2688302742087 51.888 0.32876 46.153 46.004 46.333 -5.7345 30 22 2 0 0 0 0.078314 1 32659 32659 38.176 12.776 1 66502000 56903 9906 38009 38868 66381 66381 -0.050172234301498975 RYSDPTQWTAF 11 Unmodified _RYSDPTQWTAF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 686.319091796875 2 686.320034 1370.62551 0.16226 0.00011136 0.082265 5.646E-05 0.24453 0.00016783 686.3199435875424 59.965 0.27304 59.474 59.313 59.586 -0.49079 37 13 4 0 0 0 0.18957 2 32578 32578;32688 33.445 21.204 1 7440000 56904 6006 38010 38869 66382;66383 66382 -0.04497307304541209 RYSDPTQWTAF 11 Unmodified _RYSDPTQWTAF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.3209838867188 2 686.320034 1370.62551 0.44326 0.00030422 -0.16692 -0.00011456 0.27635 0.00018966 686.3198595574908 59.596 0.32848 59.542 59.346 59.675 -0.053062 46 16 4 0 0 0 0.085069 2 32425 32425;32537 53.317 33.955 1 26581000 56905 6006 38010 38869 66384;66385 66384 -0.04497307304541209 RYSDPTQWTAF 11 Unmodified _RYSDPTQWTAF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.3201904296875 2 686.320034 1370.62551 0.81063 0.00055635 -0.44061 -0.0003024 0.37002 0.00025395 686.3197352069338 65.966 0.78755 59.79 59.51 60.298 -6.1757 105 45 3 0 0 0 0.00037182 3 42747 42747;42891;43033 101.54 76.552 1 52677000 56906 6006 38010 38869 66386;66387;66388 66386 -0.04497307304541209 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2566528320312 2 562.256371 1122.49819 0.3453 0.00019415 0.52593 0.00029571 0.87123 0.00048985 562.2569952959417 50.377 0.52836 50.377 50.032 50.56 0 71 24 4 0 0 0 0.032796 1 27809 27809 53.833 1.5644 1 59273000 56907 6153 38011 38870 66389 66389 -0.058160281787195345 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2567138671875 2 562.256371 1122.49819 0.70558 0.00039672 -0.054042 -3.0386E-05 0.65154 0.00036633 562.2563945613412 50.841 0.4263 50.427 50.214 50.64 -0.41351 76 20 5 0 0 0 0.047788 1 27337 27337 45.7 1.8413 1 72104000 56908 6153 38011 38870 66390 66390 -0.058160281787195345 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2570190429688 2 562.256371 1122.49819 0.40849 0.00022968 0.48045 0.00027013 0.88894 0.00049981 562.2566794539083 56.095 0.53252 50.118 49.805 50.338 -5.9769 98 31 4 0 0 0 0.023481 3 35862 35590;35724;35862 60.074 13.864 1 333030000 56909 6153 38011 38870 66391;66392;66393 66393 -0.058160281787195345 RYSDSTFTF 9 Unmodified _RYSDSTFTF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000510040.1_1_5:49962653-49963972:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 562.256371 1122.49819 1.5092 0.00084855 -0.25251 -0.00014198 1.2567 0.00070658 562.2563067797549 50.501 0.30403 50.45 50.268 50.573 -0.050949 0.10702 -0.00042347 NaN 60.074 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4483300 56910 6153 38011 38870 -0.058160281787195345 RYSEMDDHY 9 Unmodified _RYSEMDDHY_ 0 0 0 ENSG00000138778|ENST00000265148|CENPE;nc|ENSG00000138778|Q02224-3|CENPE ENSG00000138778|ENST00000265148|CENPE ENSG00000138778|ENST00000265148|CENPE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8307800292969 3 405.829355 1214.46624 NaN NaN NaN NaN NaN NaN NaN 37.391 1 37.391 36.891 37.891 0 0 0 0 0.84564 1 19885 19885 1.0715 0.3738 1 56911 5105 38012 38871 66394 66394 -0.13241763924179395 RYSFFHKLI 9 Unmodified _RYSFFHKLI_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;ENST00000438961.1_1_7:766900-790557:+|nuORF nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2293701171875 3 404.229231 1209.66586 0.27387 0.0001107 0.6932 0.00028021 0.96706 0.00039091 404.22953145814466 47.846 0.2464 47.807 47.661 47.907 -0.038643 25 11 3 0 0 0 0.18178 1 25774 25774 24.957 13.439 1 3503700 56912 7248 38013 38872 66395 66395 0.06941703876577776 RYSFYTFSL 9 Unmodified _RYSFYTFSL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1;ENSG00000206527|ENST00000383657|HACD2 ENSG00000165996|ENST00000361271|HACD1;ENSG00000206527|ENST00000383657|HACD2 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.2931518554688 2 592.292756 1182.57096 0.014488 8.5812E-06 0.32056 0.00018986 0.33504 0.00019844 592.2928849760951 76.597 0.28197 76.647 76.494 76.776 0.050102 18 11 2 0 0 0 0.062454 1 42251 42251 41.956 5.4494 1 2850800 56913 7418;10399 38014 38873 66396 66396 -0.013022743852843632 RYSGNKPLNQ 10 Unmodified _RYSGNKPLNQ_ 0 0 0 REV__ENST00000590289.5_1_17:43213511-43213988:+|nuORF REV__ENST00000590289.5_1_17:43213511-43213988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8742370605469 3 392.875516 1175.60472 NaN NaN NaN NaN NaN NaN NaN 28.441 1 28.379 27.879 28.879 -0.062159 0 0 0 0.97302 1 14683 14683 1.7423 0.089654 1 + 56914 23207 38015 38874 66397 66397 0.023941471064972575 RYSGNQVLF 9 Unmodified _RYSGNQVLF_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7839965820312 2 542.282723 1082.55089 -0.044517 -2.4141E-05 -0.086659 -4.6994E-05 -0.13118 -7.1135E-05 542.2827477118265 45.905 0.3058 45.581 45.468 45.774 -0.32425 29 16 2 0 0 0 0.025842 2 24518 24518;24623 57.722 32.323 1 42678000 56915 16307 38016 38875 66398;66399 66398 0.012919746747684258 RYSGNQVLF 9 Unmodified _RYSGNQVLF_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2838745117188 2 542.282723 1082.55089 0.11325 6.1411E-05 -0.28607 -0.00015513 -0.17282 -9.3718E-05 542.2826342563762 45.612 0.26727 45.584 45.456 45.724 -0.028011 26 13 2 0 0 0 0.062454 2 24470 24459;24470 41.956 22.699 1 13562000 56916 16307 38016 38875 66400;66401 66401 0.012919746747684258 RYSGNQVLF 9 Unmodified _RYSGNQVLF_ 0 0 0 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 nc|ENSG00000158987|Q8TEU7-2|RAPGEF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2833251953125 2 542.282723 1082.55089 1.0057 0.00054535 0.18635 0.00010106 1.192 0.00064641 542.2826985339586 50.257 0.6471 44.718 44.452 45.1 -5.5391 118 41 4 0 0 0 0.040683 3 31366 31366;31505;31640 49.554 24.155 1 220990000 56917 16307 38016 38875 66402;66403;66404 66402 0.012919746747684258 RYSGVNQSMLF 11 Oxidation (M) _RYSGVNQSM(Oxidation (M))LF_ RYSGVNQSM(1)LF RYSGVNQSM(57)LF 0 0 1 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.8162231445312 2 659.316437 1316.61832 0.093877 6.1895E-05 -0.78538 -0.00051782 -0.69151 -0.00045592 659.3159206874612 45.652 0.22507 45.328 45.235 45.46 -0.32425 26 12 3 0 0 0 0.02135 1 24386 24386 57.108 30.839 1 44994000 56918 6480 38017 38876 66405 66405 1135 -0.027323631766194012 RYSGVNQSMLF 11 Oxidation (M) _RYSGVNQSM(Oxidation (M))LF_ RYSGVNQSM(1)LF RYSGVNQSM(65)LF 0 0 1 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.316650390625 2 659.316437 1316.61832 0.39175 0.00025829 -0.79152 -0.00052186 -0.39976 -0.00026357 659.3161885301276 45.377 0.24746 45.349 45.226 45.473 -0.028011 35 12 4 0 0 0 0.012739 1 24356 24356 64.927 38.659 1 48102000 56919 6480 38017 38876 66406 66406 1135 -0.027323631766194012 RYSGVNQSMLF 11 Oxidation (M) _RYSGVNQSM(Oxidation (M))LF_ RYSGVNQSM(1)LF RYSGVNQSM(100)LF 0 0 1 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.8175048828125 2 659.316437 1316.61832 0.78926 0.00052037 -0.52753 -0.00034781 0.26172 0.00017256 659.3161956905695 50.689 0.51868 45.04 44.778 45.297 -5.649 100 32 4 0 0 0 2.1826E-06 3 31960 31693;31830;31960 101.54 53.795 1 215230000 56920 6480 38017 38876 66407;66408;66409 66409 1135 -0.027323631766194012 RYSGVNQSMLF 11 Unmodified _RYSGVNQSMLF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.318359375 2 651.31898 1300.62341 0.38585 0.00025131 -0.14362 -9.3543E-05 0.24223 0.00015777 651.319719989763 55.267 0.31982 55.198 55.057 55.377 -0.068741 31 15 3 0 0 0 0.37603 1 30013 30013 22.775 5.6621 1 2903700 56921 6480 38017 38877 66410 66410 -0.014880593139878329 RYSGVNQSMLF 11 Unmodified _RYSGVNQSMLF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.3204345703125 2 651.31898 1300.62341 1.1131 0.000725 -0.17082 -0.00011126 0.9423 0.00061374 651.3191105258923 60.786 0.60368 54.638 54.412 55.015 -6.1478 92 32 4 0 0 0 0.0033762 3 39301 39057;39176;39301 78.06 38.111 1 143440000 56922 6480 38017 38877 66411;66412;66413 66413 -0.014880593139878329 RYSHTAHVL 9 Unmodified _RYSHTAHVL_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0218811035156 3 361.861319 1082.56213 1.112 0.00040237 -0.31692 -0.00011468 0.79503 0.00028769 361.8611455798146 17.504 0.1291 14.918 14.858 14.987 -2.5866 36 31 2 0 0 0 0.21641 1 9134 9134 2.086 0.60411 1 4683600 56923 7802 38018 38878 66414 66414 0.024147967689032157 RYSIAFPLL 9 Unmodified _RYSIAFPLL_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3173828125 2 540.316035 1078.61752 -0.083446 -4.5087E-05 0.052566 2.8402E-05 -0.03088 -1.6685E-05 540.3160368823643 87.496 0.32011 87.549 87.4 87.72 0.053352 37 15 3 0 0 0 0.010611 2 48616 48616;48727 78.728 26.46 1 94539000 56924 840 38019 38879 66415;66416 66415 0.08135210236650892 RYSIAFPLL 9 Unmodified _RYSIAFPLL_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3170776367188 2 540.316035 1078.61752 0.63089 0.00034088 0.51301 0.00027719 1.1439 0.00061806 540.31636311245 99.547 0.26521 93.371 93.243 93.508 -6.1757 52 16 4 0 0 0 0.14 1 66278 66278 29.082 3.6823 1 588490000 56925 840 38019 38879 66417 66417 0.08135210236650892 RYSIPQAIF 9 Unmodified _RYSIPQAIF_ 0 0 0 ENSG00000169856|ENST00000305901|ONECUT1;ENSG00000205922|ENST00000382349|ONECUT3;ENSG00000119547|ENST00000491143|ONECUT2 ENSG00000169856|ENST00000305901|ONECUT1 ENSG00000169856|ENST00000305901|ONECUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8034057617188 2 547.803291 1093.59203 0.57974 0.00031758 -0.44137 -0.00024179 0.13836 7.5796E-05 547.802964514874 64.999 0.34318 64.999 64.836 65.18 7.6294E-06 37 16 3 0 0 0 0.13231 1 35622 35622 29.841 8.0939 1 5809700 56926 3446 38020 38880 66418 66418 0.048977357142121036 RYSLFKLVF 9 Unmodified _RYSLFKLVF_ 0 0 0 ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3130493164062 2 586.844959 1171.67537 0.37584 0.00022056 -0.49925 -0.00029298 -0.12341 -7.2424E-05 586.8449335457183 77.571 0.21188 77.621 77.486 77.698 0.050102 13 8 2 0 0 0 0.20883 1 42835 42835 8.1555 3.3995 1 1895800 56927 3601 38021 38881 66419 66419 0.09639472162075435 RYSLFKLVF 9 Unmodified _RYSLFKLVF_ 0 0 0 ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 MSMS AL20221201_MKP_PDAC_01 4 586.8446655273438 2 586.844959 1171.67537 NaN NaN NaN NaN NaN NaN NaN 99.933 1 93.758 93.258 94.258 -6.1757 0 0 0 0.15231 1 66707 66707 36.506 17.249 1 56928 3601 38021 38881 66420 66420 0.09639472162075435 RYSLNEFCAL 10 Unmodified _RYSLNEFCAL_ 0 0 0 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8706970214844 3 405.865741 1214.57539 0.60896 0.00024716 3.7273 0.0015128 4.3363 0.0017599 406.20171622618557 45.027 0.19326 40.175 40.133 40.326 -4.852 15 12 2 0 0 0 0.50944 1 27667 27667 9.544 0 1 23171000 56929 4623 38022 38882 66421 66421 -0.023311332340199442 RYSLRQYNI 9 Unmodified _RYSLRQYNI_ 0 0 0 ENST00000495767.5_1_3:182740340-182790239:-|nuORF;ENSG00000078070|ENST00000265594|MCCC1 ENST00000495767.5_1_3:182740340-182790239:-|nuORF ENST00000495767.5_1_3:182740340-182790239:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8870849609375 3 404.887645 1211.64111 NaN NaN NaN NaN NaN NaN NaN 36.076 1 36.101 35.601 36.601 0.024967 0 0 0 0.56093 1 19101 19101 13.615 1.3742 1 56930 1234 38023 38883 66422 66422 0.043750240031840804 RYSLVHQRL 9 Unmodified _RYSLVHQRL_ 0 0 0 ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2281494140625 3 391.228001 1170.66217 0.090403 3.5368E-05 -0.051215 -2.0037E-05 0.039188 1.5332E-05 391.2281354981311 24.351 0.14431 24.373 24.293 24.437 0.021185 7 5 2 0 0 0 0.19349 1 12582 12582 23.801 8.8439 1 2215500 56931 7079 38024 38884 66423 66423 0.08367034102707294 RYSLVHQRL 9 Unmodified _RYSLVHQRL_ 0 0 0 ENSG00000163820|ENST00000296137|FYCO1;nc|ENSG00000163820|Q9BQS8-4|FYCO1;nc|ENSG00000163820|Q9BQS8-3|FYCO1;nc|ENSG00000163820|Q9BQS8-2|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 ENSG00000163820|ENST00000296137|FYCO1 MSMS AL20221201_MKP_PDAC_01 4 391.2279052734375 3 391.228001 1170.66217 NaN NaN NaN NaN NaN NaN NaN 27.953 1 24.805 24.305 25.305 -3.1482 0 0 0 0.3052 1 15537 15537 24.882 14.731 1 56932 7079 38024 38884 66424 66424 0.08367034102707294 RYSLVSEQL 9 Unmodified _RYSLVSEQL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7972412109375 2 547.795663 1093.57677 0.97422 0.00053368 0.07342 4.0219E-05 1.0476 0.00057389 547.7953592840755 52.78 0.3749 47.045 46.874 47.249 -5.7345 37 20 3 0 0 0 0.053952 2 33289 33289;33402 43.982 3.2443 1 48198000 56933 9250 38025 38885 66425;66426 66425 0.03372824126381602 RYSNAQILQF 10 Unmodified _RYSNAQILQF_ 0 0 0 ENSG00000014914|ENST00000439741|MTMR11;ENST00000490310.1_1_1:149902202-149903022:-|nuORF;ENST00000482343.5_1_1:149901475-149902499:-|nuORF;nc|ENSG00000014914|A4FU01-4|MTMR11 ENSG00000014914|ENST00000439741|MTMR11 ENSG00000014914|ENST00000439741|MTMR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8279418945312 2 620.327662 1238.64077 0.97687 0.00060598 -0.54984 -0.00034108 0.42703 0.0002649 620.3273563032292 57.257 0.25972 57.191 57.018 57.277 -0.066036 20 12 2 0 0 0 0.16005 1 31140 31140 38.615 17.078 1 4986100 56934 488 38026 38886 66427 66427 0.030996042833066895 RYSNELYEL 9 Unmodified _RYSNELYEL_ 0 0 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.789306640625 2 593.790578 1185.5666 0.46809 0.00027795 -0.3808 -0.00022612 0.087287 5.183E-05 593.7899319885204 49.769 0.32041 49.769 49.606 49.926 0 49 14 5 0 0 0 0.34748 1 27374 27374 20.415 12.504 1 16778000 56935 2821 38027 38887 66428 66428 -0.018757835988708393 RYSNELYEL 9 Unmodified _RYSNELYEL_ 0 0 0 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7920532226562 2 593.790578 1185.5666 0.86194 0.00051181 -0.16701 -9.9169E-05 0.69493 0.00041264 593.7905315963413 55.34 0.46196 49.419 49.208 49.669 -5.9211 53 28 3 0 0 0 0.01085 2 35307 35175;35307 96.111 43.843 1 33827000 56936 2821 38027 38887 66429;66430 66430 -0.018757835988708393 RYSNLILNL 9 Unmodified _RYSNLILNL_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.322265625 2 553.321848 1104.62914 0.96414 0.00053348 -0.91981 -0.00050895 0.044332 2.453E-05 553.3210824753677 70.575 0.45378 70.611 70.401 70.855 0.035515 33 19 2 0 0 0 0.036857 1 38826 38826 51.63 11.68 1 5732100 56937 1239 38028 38888 66431 66431 0.08101407260005544 RYSNLILNLF 10 Unmodified _RYSNLILNLF_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.8570556640625 2 626.856055 1251.69756 2.1396 0.0013412 1.0916 0.00068427 3.2312 0.0020255 626.8568963675158 94.465 0.42963 94.479 94.266 94.695 0.014244 48 15 4 0 0 0 0.14688 2 52452 52452;52554 40.239 13.971 1 23814000 56938 1239 38029 38889 66432;66433 66432 0.08177651839832834 RYSNLILNLF 10 Unmodified _RYSNLILNLF_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3;ENST00000587328.2_1_18:39644671-39661098:+|nuORF ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.8566284179688 2 626.856055 1251.69756 0.60778 0.00038099 -0.21232 -0.00013309 0.39546 0.0002479 626.8559163378735 100.53 0.14751 94.354 94.27 94.418 -6.1757 23 8 4 0 0 0 0.20195 1 67236 67236 33.445 11.908 1 142670000 56939 1239 38029 38889 66434 66434 0.08177651839832834 RYSNWLDKL 9 Unmodified _RYSNWLDKL_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8168334960938 2 597.81693 1193.61931 -0.1318 -7.8792E-05 0.65468 0.00039138 0.52288 0.00031259 597.8169978230098 54.243 0.21856 54.176 54.062 54.28 -0.066936 21 10 3 0 0 0 0.20507 1 29446 29446 22.658 3.4011 1 1867300 56940 1413 38030 38890 66435 66435 0.030242192545983926 RYSPRRSLI 9 Unmodified _RYSPRRSLI_ 0 0 0 REV__ENST00000489388.5_1_10:35416112-35468254:+|nuORF REV__ENST00000489388.5_1_10:35416112-35468254:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.227294921875 3 383.228001 1146.66217 NaN NaN NaN NaN NaN NaN NaN 69.415 1 63.239 62.739 63.739 -6.1757 0 0 0 0.57317 1 45338 45338 8.7454 1.6437 1 + 56941 16896 38031 38891 66436 66436 0.0947103410269392 RYSPVLSRF 9 Unmodified _RYSPVLSRF_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.814208984375 2 562.81419 1123.61383 0.37857 0.00021306 -0.69961 -0.00039375 -0.32104 -0.00018069 562.8137521943254 41.372 0.3726 41.37 41.18 41.553 -0.0017929 62 17 5 0 0 0 0.022461 2 22039 22039;22147 61.09 29.822 1 144860000 56942 7519 38032 38892 66437;66438 66437 0.05696540462804478 RYSPVLSRF 9 Unmodified _RYSPVLSRF_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8165893554688 2 562.81419 1123.61383 0.87911 0.00049477 0.034655 1.9505E-05 0.91376 0.00051428 562.8142317512568 45.616 0.49734 40.661 40.425 40.922 -4.9549 112 33 4 0 0 0 0.022461 3 27906 27906;28041;28186 61.09 35.691 1 209230000 56943 7519 38032 38892 66439;66440;66441 66439 0.05696540462804478 RYSPVLSRF 9 Unmodified _RYSPVLSRF_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.545654296875 3 375.545219 1123.61383 1.2078 0.00045357 -0.37002 -0.00013896 0.83774 0.00031461 375.54519439720855 45.653 0.4433 40.698 40.45 40.894 -4.9549 70 29 3 0 0 0 0.036857 2 28088 27943;28088 40.725 20.144 1 40552000 56944 7519 38032 38892 66442;66443 66443 0.05696540462804478 RYSQYIFCY 9 Unmodified _RYSQYIFCY_ 0 0 0 REV__nc|ENSG00000144559|Q96BW9|TAMM41 REV__nc|ENSG00000144559|Q96BW9|TAMM41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7816162109375 2 621.784241 1241.55393 -0.44975 -0.00027965 -2.6722 -0.0016616 -3.122 -0.0019412 621.7817616040501 56.012 0.14246 55.532 55.477 55.619 -0.4802 9 6 2 0 0 0 0.54444 1 30419 30419 4.756 0.81161 1 1689100 + 56945 29679 38033 38893 66444 66444 -0.05718518262733596 RYSQYIFCY 9 Unmodified _RYSQYIFCY_ 0 0 0 REV__nc|ENSG00000144559|Q96BW9|TAMM41 REV__nc|ENSG00000144559|Q96BW9|TAMM41 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.784241 1241.55393 -0.44975 -0.00027965 -2.6722 -0.0016616 -3.122 -0.0019412 621.7817616040501 56.012 0.14246 55.532 55.477 55.619 -0.4802 0 0 NaN 4.756 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1689100 + 56946 29679 38033 38893 -0.05718518262733596 RYSRGQRIF 9 Unmodified _RYSRGQRIF_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8893432617188 3 394.887868 1181.64177 0.17559 6.9338E-05 1.5104 0.00059644 1.686 0.00066578 395.22256575979674 39.249 0.32637 39.249 39.036 39.362 0 23 15 2 0 0 0 0.54444 1 21064 21064 2.7352 0 1 1881800 + 56947 19400 38034 38894 66445 66445 0.05821863442884023 RYSRSLTIAEF 11 Unmodified _RYSRSLTIAEF_ 0 0 0 ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB ENST00000481742.1_1_19:36606435-36607215:+|nuORF ENST00000481742.1_1_19:36606435-36607215:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2420043945312 3 448.241976 1341.7041 0.87763 0.00039339 0.33106 0.00014839 1.2087 0.00054178 448.24213349939737 47.803 0.30421 47.764 47.62 47.924 -0.038643 53 14 5 0 0 0 0.15156 2 25724 25724;25819 29.281 17.054 1 42751000 56948 2294 38035 38895 66446;66447 66446 0.04691545000559927 RYSRSLTIAEF 11 Unmodified _RYSRSLTIAEF_ 0 0 0 ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB ENST00000481742.1_1_19:36606435-36607215:+|nuORF ENST00000481742.1_1_19:36606435-36607215:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.8604736328125 2 671.859326 1341.7041 0.74612 0.00050129 0.20189 0.00013564 0.94801 0.00063693 671.8594318230816 47.807 0.22909 47.769 47.661 47.89 -0.038643 25 10 3 0 0 0 0.016317 1 25765 25765 61.09 36.099 1 3430500 56949 2294 38035 38895 66448 66448 0.04691545000559927 RYSRSLTIAEF 11 Unmodified _RYSRSLTIAEF_ 0 0 0 ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB ENST00000481742.1_1_19:36606435-36607215:+|nuORF ENST00000481742.1_1_19:36606435-36607215:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.2433166503906 3 448.241976 1341.7041 NaN NaN NaN NaN NaN NaN NaN 52.635 1 46.901 46.401 47.401 -5.7345 0 0 0 0.68775 1 33225 33225 10.527 3.4904 1 56950 2294 38035 38895 66449 66449 0.04691545000559927 RYSRSVLLI 9 Unmodified _RYSRSVLLI_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5606384277344 3 369.560869 1105.66078 NaN NaN NaN NaN NaN NaN NaN 47.197 1 47.163 46.663 47.663 -0.033417 0 0 0 0.3052 1 25420 25420 24.882 7.0184 1 56951 7756 38036 38896 66450 66450 0.11217400013947554 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(44)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2317504882812 2 518.231842 1034.44913 -0.22406 -0.00011611 -0.3171 -0.00016433 -0.54116 -0.00028045 518.2318088097913 25.808 0.24891 25.808 25.634 25.883 0 42 11 4 0 0 0 0.05483 1 13281 13281 43.772 13.136 1 69812000 56952 6849 38037 38897 66451 66451 1185 -0.06671639739306556 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(50)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2316284179688 2 518.231842 1034.44913 -0.23713 -0.00012289 -0.47814 -0.00024779 -0.71527 -0.00037068 518.2317293229901 25.996 0.26213 25.996 25.883 26.145 0 50 12 5 0 0 0 0.040683 1 13382 13382 49.554 18.918 1 65887000 56953 6849 38037 38897 66452 66452 1185 -0.06671639739306556 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(40)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.232177734375 2 518.231842 1034.44913 0.22409 0.00011613 0.27258 0.00014126 0.49667 0.00025739 518.2320107482001 25.885 0.13517 25.868 25.809 25.944 -0.017008 13 9 2 0 0 0 0.069655 1 13289 13289 40.239 11.158 1 35561000 56954 6849 38037 38897 66453 66453 1185 -0.06671639739306556 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(70)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.232177734375 2 518.231842 1034.44913 0.24596 0.00012747 -0.5053 -0.00026186 -0.25934 -0.0001344 518.2317237147828 26.06 0.22561 26.039 25.924 26.149 -0.02173 26 14 3 0 0 0 0.013609 1 13386 13386 70.332 26.474 1 27310000 56955 6849 38037 38897 66454 66454 1185 -0.06671639739306556 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(42)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.23095703125 2 518.231842 1034.44913 0.27005 0.00013995 0.60885 0.00031553 0.8789 0.00045547 518.2320409744364 25.819 0.1479 25.846 25.798 25.946 0.026953 13 9 2 0 0 0 0.062454 1 13374 13374 41.956 11.319 1 9806500 56956 6849 38037 38897 66455 66455 1185 -0.06671639739306556 RYSSMAASF 9 Oxidation (M) _RYSSM(Oxidation (M))AASF_ RYSSM(1)AASF RYSSM(48)AASF 0 0 1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.231201171875 2 518.231842 1034.44913 0.76668 0.00039732 -0.92867 -0.00048127 -0.16199 -8.3947E-05 518.2314980496013 28.863 0.62987 25.715 25.458 26.088 -3.1482 94 35 3 0 0 0 0.044296 2 16289 16163;16289 47.594 16.958 1 207440000 56957 6849 38037 38897 66456;66457 66457 1185 -0.06671639739306556 RYSSMAASF 9 Unmodified _RYSSMAASF_ 0 0 0 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2349853515625 2 510.234384 1018.45422 -0.2681 -0.00013679 0.33962 0.00017329 0.071518 3.6491E-05 510.2346046694057 37.684 0.2405 37.413 37.303 37.544 -0.27133 25 10 3 0 0 0 0.078314 1 19787 19787 38.176 11.292 1 8850600 56958 6849 38037 38898 66458 66458 -0.054273358766863566 RYSSMAASF 9 Unmodified _RYSSMAASF_ 0 0 0 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2347717285156 2 510.234384 1018.45422 0.1296 6.6126E-05 0.82668 0.0004218 0.95628 0.00048793 510.2348589306987 37.349 0.22375 37.371 37.24 37.464 0.021545 21 9 3 0 0 0 0.047788 1 19806 19806 45.7 11.597 1 3689800 56959 6849 38037 38898 66459 66459 -0.054273358766863566 RYSSMAASF 9 Unmodified _RYSSMAASF_ 0 0 0 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 ENSG00000162366|ENST00000294338|PDZK1IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2323913574219 2 510.234384 1018.45422 0.52398 0.00026735 -0.45997 -0.00023469 0.064012 3.2661E-05 510.2342474551409 42.156 0.62122 37.472 37.143 37.764 -4.6846 147 39 5 0 0 0 0.047788 3 25249 25249;25388;25532 45.7 18.816 1 670800000 56960 6849 38037 38898 66460;66461;66462 66460 -0.054273358766863566 RYSSQLANL 9 Unmodified _RYSSQLANL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2789916992188 2 526.28018 1050.54581 -0.094157 -4.9553E-05 0.41435 0.00021807 0.3202 0.00016851 526.2804137257763 38.74 0.32661 38.453 38.303 38.63 -0.28687 49 15 4 0 0 0 0.0082475 2 20366 20366;20465 92.653 10.763 1 55100000 + 56961 176 38038 38899 66463;66464 66463 0.022556708121328484 RYSSQLANL 9 Unmodified _RYSSQLANL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2798461914062 2 526.28018 1050.54581 0.064342 3.3862E-05 -0.16257 -8.5555E-05 -0.098224 -5.1693E-05 526.2800480930813 38.405 0.30532 38.422 38.239 38.544 0.01704 36 13 4 0 0 0 0.010301 1 20382 20382 79.596 17.024 1 15822000 + 56962 176 38038 38899 66465 66465 0.022556708121328484 RYSSQLANL 9 Unmodified _RYSSQLANL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 526.28018 1050.54581 0.71227 0.00037486 -0.24226 -0.0001275 0.47001 0.00024736 526.2802449103422 38.487 0.32979 38.487 38.352 38.682 0 0.033237 -0.00027151 NaN 92.653 64 19 4 NaN NaN NaN NaN 0 NaN NaN 0 42917000 + 56963 176 38038 38899 0.022556708121328484 RYSTQIHSF 9 Unmodified _RYSTQIHSF_ 0 0 0 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7863159179688 2 569.78563 1137.55671 NaN NaN NaN NaN NaN NaN NaN 28.364 1 28.302 27.802 28.802 -0.062159 0 0 0 0.15231 1 14641 14641 36.506 13.358 1 56964 8909 38039 38900 66466 66466 -0.0065692681357631955 RYSTQIHSF 9 Unmodified _RYSTQIHSF_ 0 0 0 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 ENSG00000180535|ENST00000609256|BHLHA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7865600585938 2 569.78563 1137.55671 0.67335 0.00038366 -0.3456 -0.00019692 0.32774 0.00018674 569.7853519929994 31.573 0.1921 27.877 27.808 28 -3.6958 14 9 2 0 0 0 0.0085526 1 17885 17885 107.56 63.705 1 24695000 56965 8909 38039 38900 66467 66467 -0.0065692681357631955 RYSVASFKF 9 Unmodified _RYSVASFKF_ 0 0 0 ENSG00000164976|ENST00000297625|MYORG ENSG00000164976|ENST00000297625|MYORG ENSG00000164976|ENST00000297625|MYORG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.796142578125 2 552.795466 1103.57638 NaN NaN NaN NaN NaN NaN NaN 49.97 1 49.921 49.421 50.421 -0.048824 0 0 0 0.10661 1 27017 27017 41.956 7.8531 1 56966 7275 38040 38901 66468 66468 0.028734491971817988 RYSVASFKF 9 Unmodified _RYSVASFKF_ 0 0 0 ENSG00000164976|ENST00000297625|MYORG ENSG00000164976|ENST00000297625|MYORG ENSG00000164976|ENST00000297625|MYORG MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7954711914062 2 552.795466 1103.57638 0.8885 0.00049116 1.1581 0.00064018 2.0466 0.0011313 552.7955823044318 54.806 0.34043 48.941 48.779 49.119 -5.8653 29 20 2 0 0 0 0.062454 1 34814 34814 41.956 7.8531 1 13616000 56967 7275 38040 38901 66469 66469 0.028734491971817988 RYSVFFQSL 9 Unmodified _RYSVFFQSL_ 0 0 0 ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 ENST00000497315.5_1_3:64004227-64005057:-|nuORF ENST00000497315.5_1_3:64004227-64005057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.8007202148438 2 573.800749 1145.58694 0.62274 0.00035733 0.54811 0.00031451 1.1709 0.00067184 573.8009422273991 71.125 0.19992 70.648 70.526 70.726 -0.47735 12 8 2 0 0 0 0.32235 1 38910 38910 16.149 1.3108 1 1124900 56968 7038 38041 38902 66470 66470 0.019974318516233325 RYSVFFQSL 9 Unmodified _RYSVFFQSL_ 0 0 0 ENST00000497315.5_1_3:64004227-64005057:-|nuORF;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF;ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6 ENST00000497315.5_1_3:64004227-64005057:-|nuORF ENST00000497315.5_1_3:64004227-64005057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8004760742188 2 573.800749 1145.58694 0.83851 0.00048114 0.25953 0.00014892 1.098 0.00063006 573.8008459128005 70.505 0.58225 70.541 70.312 70.894 0.035507 90 26 5 0 0 0 0.013609 2 38728 38728;38833 70.332 35.4 1 228240000 56969 7038 38041 38902 66471;66472 66471 0.019974318516233325 RYSVFVNEL 9 Unmodified _RYSVFVNEL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2 nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7979736328125 2 563.798206 1125.58186 0.47236 0.00026632 0.62359 0.00035158 1.0959 0.00061789 563.7984246022047 59.18 0.27896 58.689 58.535 58.814 -0.49079 32 12 3 0 0 0 0.033587 1 32158 32158 53.404 19.302 1 8467000 56970 4740 38042 38903 66473 66473 0.024091279889944417 RYSVFVNEL 9 Unmodified _RYSVFVNEL_ 0 0 0 nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2 nc|ENSG00000135775|Q14746-2|COG2 nc|ENSG00000135775|Q14746-2|COG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.798828125 2 563.798206 1125.58186 1.3278 0.00074864 -0.23333 -0.00013155 1.0945 0.00061708 563.7980300161507 64.775 0.33597 58.599 58.363 58.699 -6.1757 37 18 3 0 0 0 0.15882 1 42041 42041 27.223 6.8087 1 17185000 56971 4740 38042 38903 66474 66474 0.024091279889944417 RYSVVQSLL 9 Unmodified _RYSVVQSLL_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.808837890625 2 532.808574 1063.60259 0.79286 0.00042244 -0.081063 -4.3191E-05 0.7118 0.00037925 532.8085860062242 82.874 2.1995 76.698 75.637 77.837 -6.1757 181 120 2 0 0 0 0.040683 3 54742 54061;54742;54870 49.554 9.6046 1 29459000 56972 7423 38043 38904 66475;66476;66477 66476 0.07333718368658992 RYSYVCPDL 9 Carbamidomethyl (C) _RYSYVC(Carbamidomethyl (C))PDL_ RYSYVC(1)PDL RYSYVC(110)PDL 0 1 0 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7738647460938 2 586.773874 1171.53319 0.34224 0.00020082 -0.21413 -0.00012564 0.12811 7.5173E-05 586.77383361341 51.997 0.35488 46.262 46.082 46.437 -5.7345 38 24 2 0 0 0 0.0059585 1 32728 32728 114.65 76.473 1 77486000 56973 3085 38044 38905 66478 66478 317 -0.04571108642426225 RYTALQAFKF 10 Unmodified _RYTALQAFKF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5648193359375 3 415.564391 1243.67134 0.66238 0.00027526 -0.37452 -0.00015564 0.28787 0.00011963 415.56415297576274 58.02 0.21913 57.954 57.834 58.053 -0.066036 22 10 3 0 0 0 0.2881 1 31567 31567 28.181 21.558 1 6619400 56974 550 38045 38906 66479 66479 0.05925382668351631 RYTALQAFKF 10 Unmodified _RYTALQAFKF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.34521484375 2 622.842948 1243.67134 1.0101 0.00062911 -0.072784 -4.5333E-05 0.93727 0.00058377 622.8428138614754 58.03 0.20057 57.964 57.852 58.053 -0.066036 21 9 3 0 0 0 0.091475 1 31602 31602 55.235 35.978 1 4030800 56975 550 38045 38906 66480 66480 0.05925382668351631 RYTATEGSSF 10 Unmodified _RYTATEGSSF_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5084533691406 3 373.508611 1117.504 0.012553 4.6886E-06 -1.1211 -0.00041874 -1.1086 -0.00041406 373.5081413876919 15.362 0.74717 15.368 15.185 15.932 0.0057774 111 57 4 0 0 0 0.62068 1 7630 7630 5.7834 0.05158 1 6605800 + 56976 21792 38046 38907 66481 66481 -0.05004929667029501 RYTCRWLS 8 Unmodified _RYTCRWLS_ 0 0 0 REV__ENST00000553879.5_1_14:24838333-24839008:+|nuORF REV__ENST00000553879.5_1_14:24838333-24839008:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1829833984375 3 362.183404 1083.52838 NaN NaN NaN NaN NaN NaN NaN 29.827 1 29.827 29.327 30.327 0 0 0 0 0.93587 1 15472 15472 10.074 7.0787 1 + 56977 28742 38047 38908 66482 66482 -0.010039479945135099 RYTDIDYQVF 10 Unmodified _RYTDIDYQVF_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3182983398438 2 660.31696 1318.61937 0.010551 6.9672E-06 1.5965 0.0010542 1.607 0.0010611 660.3182620878152 58.531 0.21233 58.531 58.441 58.654 0 19 8 3 0 0 0 0.46077 1 32586 32586 18.373 12.641 1 1195400 56978 5488 38048 38909 66483 66483 -0.02719825536087228 RYTDRDFYF 9 Unmodified _RYTDRDFYF_ 0 0 0 nc|ENSG00000285025|L0R8F8|MIEF1 nc|ENSG00000285025|L0R8F8|MIEF1 nc|ENSG00000285025|L0R8F8|MIEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2000427246094 3 428.199889 1281.57784 0.58406 0.00025009 0.66663 0.00028545 1.2507 0.00053555 428.19981111227594 47.784 0.22731 47.431 47.308 47.535 -0.3526 19 10 3 0 0 0 0.39143 1 25624 25624 12.873 7.4699 1 3791600 56979 16619 38049 38910 66484 66484 -0.05168961504728031 RYTDVSTRY 9 Unmodified _RYTDVSTRY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7883911132812 2 580.78837 1159.56219 NaN NaN NaN NaN NaN NaN NaN 21.603 1 21.603 21.103 22.103 0 0 0 0 0.77016 1 10943 10943 7.1017 1.3699 1 56980 10445 38050 38911 66485 66485 -0.011212480217636767 RYTDVSTRY 9 Unmodified _RYTDVSTRY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5274353027344 3 387.528005 1159.56219 NaN NaN NaN NaN NaN NaN NaN 21.627 1 21.627 21.127 22.127 0 0 0 0 0.75456 1 10956 10956 7.9454 5.5106 1 56981 10445 38050 38911 66486 66486 -0.011212480217636767 RYTDVSTRY 9 Unmodified _RYTDVSTRY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7886962890625 2 580.78837 1159.56219 0.2234 0.00012975 -1.2702 -0.00073773 -1.0468 -0.00060798 580.7880130797467 24.697 0.27056 21.814 21.617 21.888 -2.8831 21 14 2 0 0 0 0.21589 1 13431 13431 21.59 7.6841 1 2193200 56982 10445 38050 38911 66487 66487 -0.011212480217636767 RYTDVSTRY 9 Unmodified _RYTDVSTRY_ 0 0 0 ENSG00000213593|ENST00000278422|TMX2;nc|ENSG00000213593|Q9Y320-2|TMX2;ENST00000436507.2_1_9:37885847-37886384:+|nuORF ENSG00000213593|ENST00000278422|TMX2 ENSG00000213593|ENST00000278422|TMX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.1980285644531 3 387.528005 1159.56219 0.60378 0.00023398 0.33439 0.00012959 0.93817 0.00036357 387.52780506801685 24.659 0.29 21.776 21.598 21.888 -2.8831 29 15 3 0 0 0 0.20507 1 13445 13445 17.049 0.77403 1 3405700 56983 10445 38050 38911 66488 66488 -0.011212480217636767 RYTDVTTVL 9 Unmodified _RYTDVTTVL_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.290283203125 2 534.290214 1066.56587 0.61257 0.00032729 -0.4185 -0.0002236 0.19408 0.00010369 534.2899241564229 47.362 0.28571 47.009 46.86 47.145 -0.3526 35 13 4 0 0 0 0.036857 1 25364 25364 51.63 7.7715 1 16671000 56984 3660 38051 38912 66489 66489 0.03525421752101465 RYTEDQVDR 9 Unmodified _RYTEDQVDR_ 0 0 0 REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF REV__ENST00000543754.1_1_12:132425763-132428128:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.182373046875 3 394.523031 1180.54726 1.6075 0.00063419 2.4998 0.00098622 4.1073 0.0016204 394.52431680908836 33.795 0.1112 29.809 29.747 29.858 -3.9853 7 5 2 0 0 0 0.19891 1 19388 19388 7.609 1.8255 1 1589400 + 56985 22970 38052 38913 66490 66490 -0.03578739889780991 RYTERVDYL 9 Unmodified _RYTERVDYL_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.8123779296875 2 607.811845 1213.60914 -0.58827 -0.00035755 -0.41741 -0.00025371 -1.0057 -0.00061126 607.8116192107476 33.573 0.19092 33.573 33.497 33.688 0 37 20 2 0 0 0 0.073961 1 17599 17599 41.956 28.05 1 10943000 56986 799 38053 38914 66491 66491 0.01087611529374044 RYTERVDYL 9 Unmodified _RYTERVDYL_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5433959960938 3 405.543655 1213.60914 -0.54853 -0.00022245 -0.56162 -0.00022776 -1.1102 -0.00045022 405.54342277099386 33.576 0.22754 33.576 33.5 33.728 0 50 21 3 0 0 0 0.2289 1 17675 17675 20.581 9.7814 1 20312000 56987 799 38053 38914 66492 66492 0.01087611529374044 RYTERVDYL 9 Unmodified _RYTERVDYL_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.8111572265625 2 607.811845 1213.60914 0.95124 0.00057817 -1.1806 -0.00071756 -0.22932 -0.00013938 607.8109542175025 37.634 0.33045 33.265 33.157 33.487 -4.3689 50 19 3 0 0 0 0.033466 2 22080 22080;22211 49.527 21.898 1 20914000 56988 799 38053 38914 66493;66494 66493 0.01087611529374044 RYTERVDYL 9 Unmodified _RYTERVDYL_ 0 0 0 nc|ENSG00000058056|Q92995-2|USP13;ENSG00000058056|ENST00000263966|USP13 nc|ENSG00000058056|Q92995-2|USP13 nc|ENSG00000058056|Q92995-2|USP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5441284179688 3 405.543655 1213.60914 1.3237 0.0005368 -1.1278 -0.00045739 0.1958 7.9407E-05 405.5432854162792 37.624 0.53156 33.255 33.017 33.548 -4.3689 71 27 3 0 0 0 0.2289 2 22209 22089;22209 20.581 12.137 1 39685000 56989 799 38053 38914 66495;66496 66496 0.01087611529374044 RYTFKMHLL 9 Unmodified _RYTFKMHLL_ 0 0 0 ENSG00000198026|ENST00000322927|ZNF335;nc|ENSG00000198026|Q9H4Z2-2|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 MSMS AL20221201_MKP_PDAC_01 4 403.5585327148438 3 403.558471 1207.65358 NaN NaN NaN NaN NaN NaN NaN 92.147 1 85.972 85.472 86.472 -6.1757 0 0 0 0.17798 1 60931 60931 25.997 7.2762 1 56990 10038 38054 38915 66497 66497 0.05806344141865338 RYTFYVLEF 9 Unmodified _RYTFYVLEF_ 0 0 0 ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8190307617188 2 619.316232 1236.61791 0.53366 0.00033051 1.3162 0.00081513 1.8498 0.0011456 619.3169498369824 87.207 0.19928 86.703 86.562 86.761 -0.50423 14 7 2 0 0 0 0.4887 1 47685 47685 8.1555 4.2111 1 502580 56991 5450 38055 38916 66498 66498 0.009065851658533575 RYTFYVLEF 9 Unmodified _RYTFYVLEF_ 0 0 0 ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3175048828125 2 619.316232 1236.61791 NaN NaN NaN NaN NaN NaN NaN 86.486 1 86.544 86.044 87.044 0.05822 0 0 0 0.035688 1 48022 48022 63.961 31.175 1 56992 5450 38055 38916 66499 66499 0.009065851658533575 RYTFYVLEF 9 Unmodified _RYTFYVLEF_ 0 0 0 ENSG00000142892|ENST00000370812|PIGK;nc|ENSG00000142892|Q92643-2|PIGK ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3167724609375 2 619.316232 1236.61791 0.54149 0.00033535 0.30092 0.00018637 0.84241 0.00052172 619.3165299958275 99.142 0.11944 92.967 92.908 93.028 -6.1757 11 6 2 0 0 0 0.085319 1 65947 65947 36.506 14.969 1 35126000 56993 5450 38055 38916 66500 66500 0.009065851658533575 RYTGNWMPF 9 Unmodified _RYTGNWMPF_ 0 0 0 REV__ENST00000308159.9_1_16:56782148-56782304:+|nuORF REV__ENST00000308159.9_1_16:56782148-56782304:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1838073730469 3 391.183293 1170.52805 -0.22781 -8.9117E-05 0.42331 0.00016559 0.19549 7.6474E-05 391.1835917634227 32.776 0.21268 32.617 32.522 32.735 -0.15918 16 8 3 0 0 0 0.54213 1 17092 17092 4.897 0.36815 1 2148300 + 56994 25395 38056 38917 66501 66501 -0.05039367714380205 RYTGSYPVF 9 Unmodified _RYTGSYPVF_ 0 0 0 ENST00000519940.5_1_19:48735037-48741646:-|nuORF ENST00000519940.5_1_19:48735037-48741646:-|nuORF ENST00000519940.5_1_19:48735037-48741646:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 545.273193359375 2 545.271824 1088.5291 NaN NaN NaN NaN NaN NaN NaN 53.837 1 48.033 47.533 48.533 -5.8042 0 0 0 0.34649 1 34070 34070 22.736 5.794 1 56995 14718 38057 38918 66502 66502 -0.011628300738266262 RYTHHPLHSPL 11 Unmodified _RYTHHPLHSPL_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2441101074219 3 453.242311 1356.7051 NaN NaN NaN NaN NaN NaN NaN 76.323 1 76.323 75.823 76.823 0 0 0 0 0.94148 1 42440 42440 1.4551 0.24029 1 56996 5706 38058 38919 66503 66503 0.041018041601319055 RYTIVQQQI 9 Unmodified _RYTIVQQQI_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8251342773438 2 574.824755 1147.63496 0.28745 0.00016524 1.7498 0.0010058 2.0372 0.0011711 574.8245345345722 40.12 0.2661 40.12 40.01 40.276 0 26 12 3 0 0 0 0.033587 1 21541 21541 53.404 9.5457 1 6451400 56997 4231 38059 38920 66504 66504 0.0670450577167685 RYTIVQQQI 9 Unmodified _RYTIVQQQI_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8251953125 2 574.824755 1147.63496 0.76267 0.0004384 -0.056285 -3.2354E-05 0.70638 0.00040605 574.8247126094823 40.525 0.30819 40.222 40.067 40.376 -0.30304 49 14 5 0 0 0 0.012668 2 21380 21380;21486 72.968 24.622 1 43542000 56998 4231 38059 38920 66505;66506 66505 0.0670450577167685 RYTIVQQQI 9 Unmodified _RYTIVQQQI_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8251953125 2 574.824755 1147.63496 0.76211 0.00043808 0.13136 7.5512E-05 0.89347 0.00051359 574.8247639830007 45.642 0.49734 40.687 40.425 40.922 -4.9549 107 33 4 0 0 0 0.010301 3 28042 27905;28042;28184 79.596 33.575 1 219540000 56999 4231 38059 38920 66507;66508;66509 66508 0.0670450577167685 RYTIVQQQI 9 Unmodified _RYTIVQQQI_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.824755 1147.63496 0.49995 0.00028738 0.24139 0.00013876 0.74134 0.00042614 574.8247827338497 40.226 0.24811 40.231 40.068 40.316 0.0050545 0.039926 0.00022744 NaN 72.968 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 7598100 57000 4231 38059 38920 0.0670450577167685 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7837524414062 2 543.782556 1085.55056 -0.075102 -4.0839E-05 -0.094499 -5.1387E-05 -0.1696 -9.2226E-05 543.7825175843514 43.554 0.2519 43.244 43.086 43.338 -0.31039 34 11 4 0 0 0 0.01958 2 23120 23120;23228 63.961 27.833 1 83369000 57001 773 38060 38921 66510;66511 66510 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7833862304688 2 543.782556 1085.55056 0.5053 0.00027477 -0.46846 -0.00025474 0.036834 2.0029E-05 543.7823726006064 43.19 0.26899 43.174 43.042 43.311 -0.015667 38 12 4 0 0 0 0.012668 1 23120 23120 72.968 36.841 1 52679000 57002 773 38060 38921 66512 66512 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7827758789062 2 543.782556 1085.55056 NaN NaN NaN NaN NaN NaN NaN 43.324 1 43.309 42.809 43.809 -0.015667 0 0 0 0.16551 1 23218 23218 34.932 4.2955 1 57003 773 38060 38921 66513 66513 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.283447265625 2 543.782556 1085.55056 0.69247 0.00037655 0.019768 1.075E-05 0.71224 0.0003873 543.7824947764509 48.745 0.51891 43.349 43.054 43.572 -5.3961 100 30 4 0 0 0 0.012668 3 30234 30234;30357;30482 72.968 36.841 1 392880000 57004 773 38060 38921 66514;66515;66516 66514 0.011205549548776617 RYTLQASTF 9 Unmodified _RYTLQASTF_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 543.782556 1085.55056 0.16805 9.1384E-05 1.2922 0.00070269 1.4603 0.00079408 543.7835357614402 43.334 0.17656 43.334 43.222 43.399 0 0.058433 0.0015448 NaN 72.968 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4634400 57005 773 38060 38921 0.011205549548776617 RYTNCTCAK 9 Unmodified _RYTNCTCAK_ 0 0 0 ENST00000468148.5_1_6:57061274-57061340:-|nuORF ENST00000468148.5_1_6:57061274-57061340:-|nuORF ENST00000468148.5_1_6:57061274-57061340:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 530.23876953125 2 530.239144 1058.46373 NaN NaN NaN NaN NaN NaN NaN 33.37 1 29.385 28.885 29.885 -3.9853 0 0 0 0.53226 1 19133 19133 14.838 0 1 57006 13800 38061 38922 66517 66517 -0.0631589086283384 RYTNGHLF 8 Unmodified _RYTNGHLF_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2;ENST00000487755.1_1_1:155938929-155939834:-|nuORF;ENST00000465079.1_1_1:155938929-155948853:-|nuORF nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2574157714844 2 504.256508 1006.49846 0.2043 0.00010302 1.1455 0.0005776 1.3497 0.00068062 504.25695514818386 30.053 0.21535 29.973 29.841 30.056 -0.080429 11 7 2 0 0 0 0.60622 1 15584 15584 25.399 3.6527 1 2140000 57007 3230 38062 38923 66518 66518 -0.004525636681819378 RYTNRVVTL 9 Unmodified _RYTNRVVTL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3251342773438 2 561.324922 1120.63529 1.0958 0.00061511 -0.29507 -0.00016563 0.80075 0.00044948 561.3248293261044 34.714 0.47189 30.619 30.384 30.856 -4.0951 66 27 3 0 0 0 0.029718 2 20115 19986;20115 55.503 31.482 1 38996000 57008 4856 38063 38924 66519;66520 66520 0.07979925491508766 RYTNRVVTL 9 Unmodified _RYTNRVVTL_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1800231933594 3 374.552374 1120.63529 1.4246 0.00053359 0.034156 1.2793E-05 1.4588 0.00054639 374.55238753600946 34.735 0.43085 30.64 30.438 30.869 -4.0951 63 25 3 0 0 0 0.17331 1 20008 20008 27.223 15.729 1 48957000 57009 4856 38063 38924 66521 66521 0.07979925491508766 RYTNSSTEI 9 Unmodified _RYTNSSTEI_ 0 0 0 nc|ENSG00000154582|Q15369-2|ELOC;ENSG00000154582|ENST00000520242|ELOC nc|ENSG00000154582|Q15369-2|ELOC nc|ENSG00000154582|Q15369-2|ELOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.759033203125 2 535.759278 1069.504 -0.19786 -0.000106 0.73975 0.00039633 0.5419 0.00029033 535.7588536130811 21.17 0.20011 21.17 21.104 21.304 0 50 33 2 0 0 0 0.43305 1 10687 10687 15.248 5.901 1 818200 57010 6335 38064 38925 66522 66522 -0.027969296670335098 RYTPAIDVW 9 Unmodified _RYTPAIDVW_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7944946289062 2 560.792924 1119.57129 NaN NaN NaN NaN NaN NaN NaN 60.874 1 60.385 59.885 60.885 -0.48932 0 0 0 0.6534 1 33152 33152 15.248 4.4246 1 57011 918;7592 38065 38926 66523 66523 0.016291453345502305 RYTPAYAHL 9 Unmodified _RYTPAYAHL_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2854614257812 2 546.285266 1090.55598 -0.21244 -0.00011605 1.1582 0.0006327 0.94574 0.00051664 546.2856145579867 32.185 0.30804 32.056 31.891 32.199 -0.12915 35 11 5 0 0 0 0.018061 1 16716 16716 62.573 30.267 1 13588000 57012 5136 38066 38927 66524 66524 0.014322785373678926 RYTPAYAHL 9 Unmodified _RYTPAYAHL_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2861328125 2 546.285266 1090.55598 -0.19346 -0.00010569 0.049834 2.7224E-05 -0.14363 -7.8462E-05 546.2854151206033 31.999 0.26966 32.029 31.925 32.195 0.030106 24 11 3 0 0 0 0.15882 1 16778 16778 22.736 9.2284 1 3014100 57013 5136 38066 38927 66525 66525 0.014322785373678926 RYTPAYAHL 9 Unmodified _RYTPAYAHL_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2857055664062 2 546.285266 1090.55598 1.2657 0.00069143 0.41066 0.00022434 1.6764 0.00091577 546.2855991933346 35.87 0.42663 31.678 31.457 31.883 -4.1928 64 26 3 0 0 0 0.026499 2 20811 20811;20943 53.833 21.527 1 55808000 57014 5136 38066 38927 66526;66527 66526 0.014322785373678926 RYTPAYAHL 9 Unmodified _RYTPAYAHL_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5264587402344 3 364.525936 1090.55598 1.9912 0.00072583 0.27935 0.00010183 2.2705 0.00082766 364.5257143375947 35.881 0.40212 31.688 31.512 31.914 -4.1928 51 25 3 0 0 0 0.047788 1 20915 20915 45.7 36.316 1 8553400 57015 5136 38066 38927 66528 66528 0.014322785373678926 RYTPEQDTMTF 11 Oxidation (M) _RYTPEQDTM(Oxidation (M))TF_ RYTPEQDTM(1)TF RYTPEQDTM(95)TF 0 0 1 nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000131759|P10276-3|RARA;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB;nc|ENSG00000131759|P10276-2|RARA;ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENSG00000131759|ENST00000254066|RARA nc|ENSG00000077092|P10826-3|RARB nc|ENSG00000077092|P10826-3|RARB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.8074340820312 2 702.808642 1403.60273 -1.1869 -0.00083418 0.49841 0.00035029 -0.68851 -0.00048389 702.8091379841846 32.249 0.32923 32.249 32.063 32.393 0 52 16 4 0 0 0 5.2027E-06 2 16796 16796;16905 94.909 74.494 1 18275000 57016 1204 38067 38928 66529;66530 66529 199 -0.08292694484339336 RYTPEQDTMTF 11 Oxidation (M) _RYTPEQDTM(Oxidation (M))TF_ RYTPEQDTM(1)TF RYTPEQDTM(140)TF 0 0 1 nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000131759|P10276-3|RARA;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB;nc|ENSG00000131759|P10276-2|RARA;ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENSG00000131759|ENST00000254066|RARA nc|ENSG00000077092|P10826-3|RARB nc|ENSG00000077092|P10826-3|RARB MULTI-MSMS AL20221201_MKP_PDAC_01 4 702.80859375 2 702.808642 1403.60273 0.69452 0.00048812 -0.1259 -8.8482E-05 0.56863 0.00039963 702.8088168026327 36.937 0.51767 32.654 32.405 32.923 -4.2835 71 31 3 0 0 0 4.966E-15 2 21679 21540;21679 135.86 109.6 1 25603000 57017 1204 38067 38928 66531;66532 66532 199 -0.08292694484339336 RYTPEQDTMTF 11 Oxidation (M) _RYTPEQDTM(Oxidation (M))TF_ 0 0 1 nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000131759|P10276-3|RARA;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB;nc|ENSG00000131759|P10276-2|RARA;ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENSG00000131759|ENST00000254066|RARA nc|ENSG00000077092|P10826-3|RARB nc|ENSG00000077092|P10826-3|RARB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 702.808642 1403.60273 -0.18207 -0.00012796 1.1606 0.00081566 0.97851 0.00068771 702.8093593152915 32.24 0.20724 32.111 32.015 32.222 -0.12915 -0.069079 0.00087508 NaN 94.909 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 668520 57018 1204 38067 38928 199 -0.08292694484339336 RYTPEQDTMTF 11 Unmodified _RYTPEQDTMTF_ 0 0 0 nc|ENSG00000077092|P10826-3|RARB;nc|ENSG00000131759|P10276-3|RARA;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-4|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000077092|ENST00000330688|RARB;ENSG00000172819|ENST00000425354|RARG;nc|ENSG00000077092|P10826|RARB;nc|ENSG00000131759|P10276-2|RARA;ENST00000550265.5_1_12:53607169-53614138:-|nuORF;ENSG00000131759|ENST00000254066|RARA nc|ENSG00000077092|P10826-3|RARB nc|ENSG00000077092|P10826-3|RARB MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.8114624023438 2 694.811184 1387.60782 0.37012 0.00025716 0.19385 0.00013469 0.56397 0.00039185 694.8115498847761 49.824 0.34309 44.285 44.109 44.452 -5.5391 54 21 3 0 0 0 4.7025E-09 2 31110 31110;31265 114.5 82.947 1 38238000 57019 1204 38067 38929 66533;66534 66533 -0.07048390621707767 RYTPFSNGL 9 Unmodified _RYTPFSNGL_ 0 0 0 nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;ENST00000569549.5_1_16:74943656-74957850:-|nuORF nc|ENSG00000103091|Q6PJI9-2|WDR59 nc|ENSG00000103091|Q6PJI9-2|WDR59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.768798828125 2 527.769448 1053.52434 0.54118 0.00028562 -1.4359 -0.00075783 -0.89474 -0.00047221 527.7687540520564 47.624 0.20553 47.585 47.435 47.64 -0.038647 15 9 2 0 0 0 0.0086209 1 25650 25650 89.401 34.627 1 7095800 57020 2102 38068 38930 66535 66535 -0.00027714216571439465 RYTPFSNGL 9 Unmodified _RYTPFSNGL_ 0 0 0 nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59;ENST00000569549.5_1_16:74943656-74957850:-|nuORF nc|ENSG00000103091|Q6PJI9-2|WDR59 nc|ENSG00000103091|Q6PJI9-2|WDR59 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.769448 1053.52434 0.49842 0.00026305 -1.9725 -0.001041 -1.4741 -0.00077797 527.7686203073032 47.877 0.1028 47.525 47.452 47.555 -0.3526 -0.030297 -0.00049379 NaN 89.401 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4372900 57021 2102 38068 38930 -0.00027714216571439465 RYTPHPAYATF 11 Unmodified _RYTPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8876953125 3 441.887533 1322.64077 0.25567 0.00011298 -0.55182 -0.00024384 -0.29615 -0.00013087 441.8872634360508 35.299 0.27198 35.325 35.185 35.457 0.02668 26 12 3 0 0 0 0.45445 1 18691 18691 15.467 12.394 1 6575200 57022 16348 38069 38931 66536 66536 -0.00764395716691979 RYTPHPAYATF 11 Unmodified _RYTPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2215270996094 3 441.887533 1322.64077 1.0127 0.00044748 0.35074 0.00015499 1.3634 0.00060247 441.8876730081105 39.378 0.34111 34.927 34.782 35.123 -4.4509 44 20 3 0 0 0 0.35659 1 23369 23369 19.615 16.543 1 17601000 57023 16348 38069 38931 66537 66537 -0.00764395716691979 RYTPHPAYATF 11 Unmodified _RYTPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.3306274414062 2 662.327662 1322.64077 0.51533 0.00034132 2.0726 0.0013728 2.588 0.0017141 662.3294016028243 39.411 0.24601 34.96 34.796 35.042 -4.4509 21 14 2 0 0 0 0.12819 1 23380 23380 39.213 19.851 1 7264700 57024 16348 38069 38931 66538 66538 -0.00764395716691979 RYTPVGRSFF 10 Unmodified _RYTPVGRSFF_ 0 0 0 nc|ENSG00000123908|Q9UKV8-2|AGO2;ENSG00000123908|ENST00000220592|AGO2;ENSG00000092847|ENST00000373204|AGO1;ENSG00000134698|ENST00000373210|AGO4 nc|ENSG00000123908|Q9UKV8-2|AGO2 nc|ENSG00000123908|Q9UKV8-2|AGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5528259277344 3 410.552374 1228.63529 1.1602 0.00047632 0.071737 2.9452E-05 1.2319 0.00050577 410.552376171713 50.044 0.3314 44.505 44.332 44.663 -5.5391 30 21 2 0 0 0 0.38225 1 31267 31267 24.957 6.584 1 19190000 57025 3735 38070 38932 66539 66539 0.030119254915234706 RYTQDLGAF 9 Unmodified _RYTQDLGAF_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7670288085938 2 535.766906 1069.51926 0.09083 4.8664E-05 0.5126 0.00027463 0.60343 0.0003233 535.7671107975289 43.837 0.21766 43.837 43.743 43.961 0 22 12 2 0 0 0 0.0086904 1 23825 23825 107.19 45.83 1 54921000 57026 3069 38071 38933 66540 66540 -0.012720180792257452 RYTQDLGAF 9 Unmodified _RYTQDLGAF_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2683715820312 2 535.766906 1069.51926 1.0275 0.00055051 -0.30307 -0.00016237 0.72445 0.00038814 535.7665800508652 49.431 0.42847 44.035 43.824 44.252 -5.3961 67 26 3 0 0 0 0.025842 2 30785 30785;30904 57.722 30.838 1 161890000 57027 3069 38071 38933 66541;66542 66541 -0.012720180792257452 RYTRGCDGCR 10 Unmodified _RYTRGCDGCR_ 0 0 0 REV__nc|ENSG00000167395|O15015-1|ZNF646 REV__nc|ENSG00000167395|O15015-1|ZNF646 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1778259277344 3 396.178325 1185.51314 -0.006307 -2.4987E-06 -1.5598 -0.00061798 -1.5662 -0.00062047 396.1777011278602 23.245 0.37295 23.257 22.957 23.33 0.012394 23 18 2 0 0 0 0.67033 1 11838 11838 3.3196 0.24738 1 6724300 + 57028 22209 38072 38934 66543 66543 -0.07219182854032624 RYTRLPHLL 9 Unmodified _RYTRLPHLL_ 0 0 0 ENST00000487805.6_1_3:49750857-49758735:+|nuORF;ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49742606-49753136:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF ENST00000487805.6_1_3:49750857-49758735:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.5119018554688 3 390.236497 1167.68766 1.505 0.00058732 -2.8353 -0.0011064 -1.3302 -0.0005191 390.23538472723914 89.372 0.30397 83.196 82.951 83.255 -6.1757 18 16 2 0 0 0 0.19277 1 58977 58977 16.566 3.6933 1 7118800 57029 7130 38073 38935 66544 66544 0.11052508625130031 RYTSCETGF 9 Carbamidomethyl (C) _RYTSC(Carbamidomethyl (C))ETGF_ RYTSC(1)ETGF RYTSC(100)ETGF 0 1 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2;ENST00000470228.5_1_10:104858657-104865497:-|nuORF ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.739501953125 2 560.740031 1119.46551 1.3295 0.00074549 -0.53734 -0.00030131 0.79213 0.00044418 560.739812312263 30.637 0.3415 27.14 26.936 27.277 -3.497 28 16 2 0 0 0 0.0087873 2 17351 17234;17351 103.35 68.952 1 39361000 57030 1191 38074 38936 66545;66546 66546 108 -0.08944558573216455 RYTSRGRW 8 Unmodified _RYTSRGRW_ 0 0 0 REV__ENSG00000171402|ENST00000346279|XAGE3 REV__ENSG00000171402|ENST00000346279|XAGE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.193359375 3 361.19318 1080.55771 -0.57772 -0.00020867 -0.17355 -6.2684E-05 -0.75127 -0.00027135 361.19310965881124 15.148 0.33413 15.134 15.016 15.35 -0.014067 238 116 3 0 0 0 0.80763 1 7367 7367 1.3295 0 1 4274700 + 57031 21277 38075 38937 66547 66547 0.02065332345978277 RYTSVAAKSAF 11 Unmodified _RYTSVAAKSAF_ 0 0 0 ENST00000215829.7_1_22:24963979-24964039:+|nuORF ENST00000215829.7_1_22:24963979-24964039:+|nuORF ENST00000215829.7_1_22:24963979-24964039:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8224487304688 2 600.822212 1199.62987 NaN NaN NaN NaN NaN NaN NaN 26.474 1 26.5 26 27 0.026951 0 0 0 0.9385 1 13732 13732 2.086 1.1237 1 57032 10996 38076 38938 66548 66548 0.038042019090198664 RYTTAGQLW 9 Unmodified _RYTTAGQLW_ 0 0 0 nc|ENSG00000164211|Q96DR4-2|STARD4;ENST00000511569.5_1_5:110836619-110848199:-|nuORF;ENSG00000164211|ENST00000296632|STARD4 nc|ENSG00000164211|Q96DR4-2|STARD4 nc|ENSG00000164211|Q96DR4-2|STARD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2852172851562 2 548.282723 1094.55089 0.63727 0.0003494 0.10703 5.868E-05 0.74429 0.00040808 548.2829050690347 46.148 0.2352 46.12 45.973 46.208 -0.028011 23 10 3 0 0 0 0.2324 1 24786 24786 20.415 4.5674 1 4378200 57033 7165 38077 38939 66549 66549 0.00739974674752375 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.19580078125 3 399.196256 1194.56694 -0.50461 -0.00020144 0.18107 7.2282E-05 -0.32354 -0.00012915 399.19638416826405 35.173 0.24837 35.173 35.016 35.265 0 40 12 4 0 0 0 0.040733 1 18543 18543 49.527 34.57 1 36101000 57034 7498 38078 38940 66550 66550 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.2907104492188 2 598.290745 1194.56694 -0.52396 -0.00031348 -0.33907 -0.00020286 -0.86304 -0.00051635 598.2904628842239 35.16 0.26696 35.16 34.998 35.265 0 42 13 4 0 0 0 0.20389 1 18553 18553 29.841 19.767 1 61103000 57035 7498 38078 38940 66551 66551 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2905883789062 2 598.290745 1194.56694 -0.31434 -0.00018807 -0.19602 -0.00011728 -0.51036 -0.00030534 598.2907306464996 35.243 0.25946 35.02 34.917 35.176 -0.2224 26 11 3 0 0 0 0.14859 1 18449 18449 36.506 21.668 1 3234000 57036 7498 38078 38940 66552 66552 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.196044921875 3 399.196256 1194.56694 -0.3355 -0.00013393 0.078228 3.1228E-05 -0.25727 -0.0001027 399.1964587850393 35.285 0.19088 35.063 34.938 35.128 -0.2224 16 8 3 0 0 0 0.098164 1 18476 18476 33.445 26.821 1 1807800 57037 7498 38078 38940 66553 66553 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.196533203125 3 399.196256 1194.56694 0.99324 0.0003965 -1.2456 -0.00049724 -0.25236 -0.00010074 399.1964109061125 39.197 0.50939 34.746 34.488 34.997 -4.4509 139 31 6 0 0 0 0.033747 2 23133 23133;23268 53.317 42.418 1 140190000 57038 7498 38078 38940 66554;66555 66554 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2911376953125 2 598.290745 1194.56694 0.34161 0.00020438 -0.27446 -0.0001642 0.067152 4.0176E-05 598.2907348337408 39.205 0.49155 34.754 34.506 34.997 -4.4509 93 30 4 0 0 0 0.0085857 2 23134 23134;23267 110.67 62.926 1 125640000 57039 7498 38078 38940 66556;66557 66556 -0.022563638790188634 RYTTEFHEL 9 Unmodified _RYTTEFHEL_ 0 0 0 ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1 ENST00000524549.1_1_11:9597437-9598815:+|nuORF ENST00000524549.1_1_11:9597437-9598815:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 598.290745 1194.56694 -0.12722 -7.6116E-05 -0.15358 -9.1883E-05 -0.2808 -0.000168 598.2903026287951 35.046 0.083771 35.073 35.018 35.102 0.027401 0.071148 0.00015244 NaN 110.67 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 656170 57040 7498 38078 38940 -0.022563638790188634 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7949829101562 2 571.795663 1141.57677 0.70846 0.00040509 0.28554 0.00016327 0.994 0.00056836 571.7953390917617 53.769 0.25791 53.769 53.665 53.923 0 26 11 3 0 0 0 0.087164 1 29826 29826 49.527 16.742 1 6527600 57041 2814 38079 38941 66558 66558 0.011648241263856107 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7958984375 2 571.795663 1141.57677 0.31411 0.00017961 -0.5721 -0.00032713 -0.25799 -0.00014752 571.7951704581893 54.316 0.30109 53.849 53.667 53.968 -0.46664 46 15 4 0 0 0 0.13008 2 29380 29380;29486 42.312 11.676 1 32386000 57042 2814 38079 38941 66559;66560 66559 0.011648241263856107 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7964477539062 2 571.795663 1141.57677 -0.21596 -0.00012349 1.6017 0.00091582 1.3857 0.00079233 571.7957535821031 53.939 0.25591 53.872 53.765 54.021 -0.066936 23 12 2 0 0 0 0.18439 1 29299 29299 35.612 10.213 1 2344800 57043 2814 38079 38941 66561 66561 0.011648241263856107 RYTVGGLETF 10 Unmodified _RYTVGGLETF_ 0 0 0 nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 nc|ENSG00000111679|P29350-2|PTPN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7964477539062 2 571.795663 1141.57677 1.0477 0.00059907 -1.6093 -0.00092016 -0.56155 -0.00032109 571.7941503401271 60.205 0.50507 54.09 53.852 54.357 -6.1147 64 26 3 0 0 0 0.2667 1 38845 38845 29.437 5.4166 1 86630000 57044 2814 38079 38941 66562 66562 0.011648241263856107 RYVAAAHP 8 Unmodified _RYVAAAHP_ 0 0 0 REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF REV__ENST00000561344.5_1_15:96826128-96833920:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7402954101562 2 442.740494 883.466435 1.1149 0.00049363 -0.81226 -0.00035962 0.30267 0.00013401 442.7401005797362 49.569 0.31438 49.521 49.35 49.665 -0.048828 25 15 2 0 0 0 0.71616 1 26864 26864 15.768 0 1 2614300 + 57045 28017 38080 38942 66563 66563 0.020040686486481718 RYVAGIEGF 9 Unmodified _RYVAGIEGF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2655944824219 2 506.266542 1010.51853 0.91312 0.00046228 -1.0336 -0.00052326 -0.12044 -6.0976E-05 506.2658757692685 51.067 0.26785 51.067 50.919 51.187 0 23 13 2 0 0 0 0.024882 1 28163 28163 58.679 34.005 1 7699600 57046 1587 38081 38943 66564 66564 0.013691872717686238 RYVAGIEGF 9 Unmodified _RYVAGIEGF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2657165527344 2 506.266542 1010.51853 -0.48223 -0.00024414 0.51296 0.0002597 0.030732 1.5559E-05 506.2667493965725 51.57 0.22108 51.146 51.035 51.256 -0.42432 34 11 4 0 0 0 0.0090948 1 27793 27793 85.272 40.865 1 10712000 57047 1587 38081 38943 66565 66565 0.013691872717686238 RYVALTSLL 9 Unmodified _RYVALTSLL_ 0 0 0 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENST00000465445.6_1_14:24033253-24033376:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2 ENSG00000166747|ENST00000299980|AP1G1;ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENSG00000166747|ENST00000299980|AP1G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.313720703125 2 518.313492 1034.61243 0.11825 6.1288E-05 0.26809 0.00013895 0.38633 0.00020024 518.3134411611333 72.686 0.3735 72.728 72.507 72.88 0.041733 41 17 3 0 0 0 0.094149 2 39978 39978;40082 34.402 9.0024 1 12146000 57048 7526;10470 38082 38944 66566;66567 66566 0.09650906374031365 RYVALTSLL 9 Unmodified _RYVALTSLL_ 0 0 0 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565642.5_1_16:71777395-71799448:-|nuORF;ENST00000465445.6_1_14:24033253-24033376:-|nuORF;ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2 ENSG00000166747|ENST00000299980|AP1G1;ENST00000460049.6_1_14:24028960-24033376:-|nuORF ENSG00000166747|ENST00000299980|AP1G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3132934570312 2 518.313492 1034.61243 1.4338 0.00074316 -0.80628 -0.00041791 0.62752 0.00032525 518.3130546953761 95.697 0.29342 89.521 89.367 89.66 -6.1757 46 18 3 0 0 0 0.06294 1 63342 63342 41.84 1.8823 1 40457000 57049 7526;10470 38082 38944 66568 66568 0.09650906374031365 RYVDKVSNL 9 Unmodified _RYVDKVSNL_ 0 0 0 ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3038940429688 2 547.303655 1092.59276 -0.39861 -0.00021816 -0.42543 -0.00023284 -0.82404 -0.000451 547.3034949687446 27.021 0.1653 27.021 26.93 27.096 0 12 7 2 0 0 0 0.01958 1 13907 13907 63.961 14.028 1 1872700 57050 14257 38083 38945 66569 66569 0.050165303632638825 RYVDKVSNL 9 Unmodified _RYVDKVSNL_ 0 0 0 ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENST00000473572.2_1_19:36501753-36502343:-|nuORF;ENST00000462793.5_1_19:36501484-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6;ENST00000481257.5_3_19:36501646-36504244:-|nuORF;ENST00000392183.7_1_19:36501753-36505114:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF ENST00000490483.5_3_19:36500194-36502343:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.206298828125 3 365.204862 1092.59276 -0.60436 -0.00022071 1.0812 0.00039485 0.47683 0.00017414 365.2055127923598 27.014 0.21056 27.014 26.909 27.12 0 15 9 3 0 0 0 0.1685 1 13916 13916 24.882 14.731 1 1806900 57051 14257 38083 38945 66570 66570 0.050165303632638825 RYVDQVLQL 9 Unmodified _RYVDQVLQL_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.3195190429688 2 567.319306 1132.62406 0.33753 0.00019149 0.90961 0.00051604 1.2471 0.00070753 567.319771669329 58.579 0.43903 58.579 58.414 58.853 0 62 18 5 0 0 0 0.025842 2 32684 32583;32684 57.722 9.9733 1 12698000 57052 9906 38084 38946 66571;66572 66572 0.06305103397380662 RYVDQVLQL 9 Unmodified _RYVDQVLQL_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3202514648438 2 567.319306 1132.62406 0.46081 0.00026143 0.85481 0.00048495 1.3156 0.00074638 567.3197073796981 59.057 0.48575 58.566 58.391 58.876 -0.49079 65 22 3 0 0 0 0.012668 2 32072 32072;32176 72.968 25.219 1 52257000 57053 9906 38084 38946 66573;66574 66573 0.06305103397380662 RYVDQVLQL 9 Unmodified _RYVDQVLQL_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3207397460938 2 567.319306 1132.62406 0.74488 0.00042258 0.35559 0.00020173 1.1005 0.00062431 567.3198012396075 58.694 0.29569 58.633 58.486 58.782 -0.060719 30 14 3 0 0 0 0.085319 1 31960 31960 36.506 8.8774 1 3896000 57054 9906 38084 38946 66575 66575 0.06305103397380662 RYVDQVLQL 9 Unmodified _RYVDQVLQL_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3207397460938 2 567.319306 1132.62406 0.70577 0.0004004 1.2242 0.00069449 1.9299 0.0010949 567.3201430781166 65.206 0.62889 59.03 58.715 59.344 -6.1757 85 34 3 0 0 0 0.040683 2 42352 42213;42352 49.554 16.769 1 103640000 57055 9906 38084 38946 66576;66577 66577 0.06305103397380662 RYVDRVTEF 9 Unmodified _RYVDRVTEF_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5396423339844 3 395.540134 1183.59857 -0.6555 -0.00025928 0.6931 0.00027415 0.037591 1.4869E-05 395.5403946725249 34.479 0.27074 34.479 34.365 34.636 0 45 13 4 0 0 0 0.037253 2 18138 18138;18247 51.415 24.192 1 35225000 57056 2571 38085 38947 66578;66579 66578 0.01411628874939197 RYVDRVTEF 9 Unmodified _RYVDRVTEF_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8733825683594 3 395.540134 1183.59857 -0.25063 -9.9133E-05 -0.37992 -0.00015027 -0.63054 -0.00024941 395.539991827101 34.642 0.20964 34.451 34.331 34.541 -0.19131 21 9 3 0 0 0 0.030212 1 18100 18100 55.235 33.644 1 5613000 57057 2571 38085 38947 66580 66580 0.01411628874939197 RYVDRVTEF 9 Unmodified _RYVDRVTEF_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8056640625 2 592.806562 1183.59857 -0.23216 -0.00013763 -0.65346 -0.00038738 -0.88562 -0.000525 592.8062462428912 34.636 0.10431 34.445 34.393 34.497 -0.19131 8 4 2 0 0 0 0.34748 1 18126 18126 20.415 5.5763 1 2444400 57058 2571 38085 38947 66581 66581 0.01411628874939197 RYVDRVTEF 9 Unmodified _RYVDRVTEF_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.5406188964844 3 395.540134 1183.59857 1.0743 0.00042492 0.48807 0.00019305 1.5624 0.00061797 395.54035573282465 39.272 0.43234 34.821 34.582 35.014 -4.4509 85 26 4 0 0 0 0.053952 2 23171 23171;23312 43.982 27.416 1 91220000 57059 2571 38085 38947 66582;66583 66582 0.01411628874939197 RYVDRVTEF 9 Unmodified _RYVDRVTEF_ 0 0 0 ENSG00000108465|ENST00000338399|CDK5RAP3;nc|ENSG00000108465|Q96JB5-4|CDK5RAP3;ENST00000582482.1_1_17:46058511-46058865:+|nuORF;nc|ENSG00000108465|Q96JB5-3|CDK5RAP3;nc|ENSG00000108465|Q96JB5-2|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 ENSG00000108465|ENST00000338399|CDK5RAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8077392578125 2 592.806562 1183.59857 0.66414 0.00039371 0.50215 0.00029768 1.1663 0.00069139 592.8067996765117 39.241 0.41483 34.79 34.599 35.014 -4.4509 65 25 3 0 0 0 0.024546 2 23314 23178;23314 55.235 28.011 1 59495000 57060 2571 38085 38947 66584;66585 66585 0.01411628874939197 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8062133789062 2 570.806031 1139.59751 -0.014139 -8.0709E-06 -0.43355 -0.00024747 -0.44769 -0.00025554 570.8058570397154 55.213 0.27626 55.213 55.029 55.305 0 16 11 2 0 0 0 0.18144 1 30631 30631 24.991 0.97039 1 3462100 57061 347 38086 38948 66586 66586 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8059692382812 2 570.806031 1139.59751 0.27758 0.00015844 0.0035849 2.0463E-06 0.28117 0.00016049 570.8059660212896 55.771 0.34865 55.293 55.091 55.44 -0.47798 50 16 4 0 0 0 0.01958 2 30295 30193;30295 63.961 22.121 1 31110000 57062 347 38086 38948 66587;66588 66588 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8063354492188 2 570.806031 1139.59751 NaN NaN NaN NaN NaN NaN NaN 55.424 1 55.355 54.855 55.855 -0.068737 0 0 0 0.054801 1 30122 30122 55.503 21.101 1 57063 347 38086 38948 66589 66589 0.0332941450603812 RYVEIVSQF 9 Unmodified _RYVEIVSQF_ 0 0 0 nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41;nc|ENSG00000006715|P49754-2|VPS41 nc|ENSG00000006715|P49754-3|VPS41 nc|ENSG00000006715|P49754-3|VPS41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.806640625 2 570.806031 1139.59751 1.0051 0.00057372 0.41227 0.00023533 1.4174 0.00080904 570.80609790673 61.793 0.42912 55.617 55.446 55.875 -6.1757 64 22 4 0 0 0 0.0094097 2 39897 39768;39897 82.529 32.596 1 95297000 57064 347 38086 38948 66590;66591 66591 0.0332941450603812 RYVELAWGF 9 Unmodified _RYVELAWGF_ 0 0 0 ENST00000566056.1_1_16:30959736-30965162:+|nuORF;ENSG00000175938|ENST00000318663|ORAI3 ENST00000566056.1_1_16:30959736-30965162:+|nuORF ENST00000566056.1_1_16:30959736-30965162:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7959594726562 2 570.795466 1139.57638 0.15456 8.8223E-05 0.3533 0.00020166 0.50786 0.00028988 570.7955910984562 76.494 0.44807 76.542 76.272 76.72 0.047943 53 18 4 0 0 0 0.047788 2 42158 42158;42255 45.7 26.443 1 14702000 57065 8552 38087 38949 66592;66593 66592 0.012174491971563839 RYVEQKAGITF 11 Unmodified _RYVEQKAGITF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.906982421875 3 437.906705 1310.69829 -0.23769 -0.00010409 1.0952 0.00047961 0.85755 0.00037553 438.2415238386818 37.24 0.24542 36.969 36.821 37.067 -0.27133 25 9 4 0 0 0 0.17638 1 19549 19549 33.632 26.595 1 4263200 57066 2506 38088 38950 66594 66594 0.05536446488895308 RYVEQKAGITF 11 Unmodified _RYVEQKAGITF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.9068603515625 3 437.906705 1310.69829 -0.01975 -8.6488E-06 -0.050863 -2.2273E-05 -0.070613 -3.0922E-05 437.9065761084096 36.886 0.19281 36.907 36.791 36.984 0.021545 15 8 2 0 0 0 0.60536 1 19536 19536 11.065 8.5668 1 1660300 57067 2506 38088 38950 66595 66595 0.05536446488895308 RYVEQKAGITF 11 Unmodified _RYVEQKAGITF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.9075012207031 3 437.906705 1310.69829 0.4298 0.00018821 1.413 0.00061877 1.8428 0.00080698 438.24222696775394 41.329 0.30388 36.721 36.513 36.817 -4.6079 43 18 3 0 0 0 0.49156 1 24743 24743 16.838 6.5231 1 24109000 57068 2506 38088 38950 66596 66596 0.05536446488895308 RYVEQKAGITF 11 Unmodified _RYVEQKAGITF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3570556640625 2 656.356419 1310.69829 0.14348 9.4173E-05 0.072364 4.7497E-05 0.21584 0.00014167 656.3563839748844 41.318 0.22247 36.71 36.566 36.788 -4.6079 24 13 2 0 0 0 0.019307 1 24760 24760 68.76 48.345 1 14099000 57069 2506 38088 38950 66597 66597 0.05536446488895308 RYVEQKAGITF 11 Unmodified _RYVEQKAGITF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 656.356419 1310.69829 -0.18317 -0.00012022 0.98547 0.00064682 0.8023 0.0005266 656.8591748454198 37.232 0.14293 36.961 36.872 37.015 -0.27133 0.12529 0.00083678 NaN 68.76 13 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1143800 57070 2506 38088 38950 0.05536446488895308 RYVEQSNLM 9 Oxidation (M) _RYVEQSNLM(Oxidation (M))_ RYVEQSNLM(1) RYVEQSNLM(62) 0 0 1 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2769165039062 2 578.27678 1154.53901 0.029274 1.6928E-05 0.96013 0.00055522 0.98941 0.00057215 578.2769806894303 25.148 0.17756 22.265 22.228 22.406 -2.8831 22 15 2 0 0 0 0.021948 1 13797 13797 61.602 30.965 1 4736900 57071 3423 38089 38951 66598 66598 609 -0.03208010130742878 RYVEQSNLM 9 Unmodified _RYVEQSNLM_ 0 0 0 ENSG00000119321|ENST00000238256|FKBP15;nc|ENSG00000119321|Q5T1M5-2|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 ENSG00000119321|ENST00000238256|FKBP15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 569.7789916992188 2 570.279323 1138.54409 1.3275 0.00075705 -1.1363 -0.00064801 0.1912 0.00010904 570.2798914138084 37.643 0.67563 33.274 32.905 33.581 -4.3689 57 40 2 0 0 0 0.11314 1 22171 22171 38.176 2.0485 1 12261000 57072 3423 38089 38952 66599 66599 -0.019637062681340467 RYVFNLAEL 9 Unmodified _RYVFNLAEL_ 0 0 0 ENST00000560776.1_1_15:59961053-59961500:-|nuORF;ENSG00000140299|ENST00000607373|BNIP2;nc|ENSG00000140299|Q12982-2|BNIP2 ENST00000560776.1_1_15:59961053-59961500:-|nuORF ENST00000560776.1_1_15:59961053-59961500:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 562.8109130859375 2 562.808574 1123.60259 NaN NaN NaN NaN NaN NaN NaN 95.905 1 89.729 89.229 90.229 -6.1757 0 0 0 0.32177 1 63537 63537 24.021 7.0783 1 57073 15314 38090 38953 66600 66600 0.04573718368669688 RYVFNVLIY 9 Unmodified _RYVFNVLIY_ 0 0 0 ENST00000460571.1_1_1:95711973-95712171:+|nuORF ENST00000460571.1_1_1:95711973-95712171:+|nuORF ENST00000460571.1_1_1:95711973-95712171:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2278442382812 3 396.225486 1185.65463 -0.36854 -0.00014602 4.0087 0.0015884 3.6402 0.0014423 396.2275825994815 31.548 0.14923 31.578 31.499 31.648 0.030106 9 6 2 0 0 0 0.58145 1 16555 16555 2.4985 0.59211 1 1250900 57074 13642 38091 38954 66601 66601 0.06922881782429613 RYVFQSENTF 10 Unmodified _RYVFQSENTF_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8094482421875 2 645.809302 1289.60405 0.21494 0.00013881 -0.61608 -0.00039787 -0.40115 -0.00025906 645.808780346526 48.591 0.27172 48.219 48.039 48.311 -0.37172 38 13 4 0 0 0 0.00089066 1 26043 26043 114.2 87.934 1 16368000 57075 2527 38092 38955 66602 66602 -0.029166923332468286 RYVFQSENTF 10 Unmodified _RYVFQSENTF_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.8086547851562 2 645.809302 1289.60405 0.54958 0.00035492 -0.38709 -0.00024998 0.16249 0.00010494 645.8087755067271 48.271 0.22174 48.232 48.083 48.305 -0.038643 15 10 2 0 0 0 0.14688 1 26042 26042 40.239 23.126 1 1298500 57076 2527 38092 38955 66603 66603 -0.029166923332468286 RYVFQSENTF 10 Unmodified _RYVFQSENTF_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8096923828125 2 645.809302 1289.60405 1.1271 0.00072787 -0.52917 -0.00034174 0.5979 0.00038613 645.8091721703377 54.224 0.46807 48.359 48.139 48.607 -5.8653 43 27 2 0 0 0 4.0285E-07 2 34330 34330;34472 137.42 83.574 1 65955000 57077 2527 38092 38955 66604;66605 66604 -0.029166923332468286 RYVGAVGGF 9 Unmodified _RYVGAVGGF_ 0 0 0 nc|ENSG00000164300|Q86VE9-2|SERINC5;nc|ENSG00000164300|Q86VE9-3|SERINC5;nc|ENSG00000164300|Q86VE9|SERINC5;ENSG00000164300|ENST00000507668|SERINC5 nc|ENSG00000164300|Q86VE9-2|SERINC5 nc|ENSG00000164300|Q86VE9-2|SERINC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2483520507812 2 463.248152 924.481751 -0.26735 -0.00012385 -0.35468 -0.0001643 -0.62202 -0.00028815 463.24818756929295 41.427 0.21018 41.124 41.028 41.238 -0.30304 15 9 2 0 0 0 0.070838 1 21952 21952 39.957 21.822 1 2505400 57078 16339 38093 38956 66606 66606 0.016489354458599337 RYVIHLWDL 9 Unmodified _RYVIHLWDL_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5612182617188 3 405.560869 1213.66078 0.31183 0.00012647 0.099782 4.0468E-05 0.41161 0.00016693 405.5608123840609 71.869 0.22639 71.908 71.768 71.994 0.039024 27 10 3 0 0 0 0.21589 1 39551 39551 21.59 14.553 1 4253700 57079 6659 38094 38957 66607 66607 0.06249400013939521 RYVIHLWDL 9 Unmodified _RYVIHLWDL_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.837890625 2 607.837665 1213.66078 0.61608 0.00037448 -0.036939 -2.2453E-05 0.57915 0.00035203 607.837761970224 71.862 0.2066 71.901 71.768 71.974 0.039024 21 9 3 0 0 0 0.171 1 39559 39559 34.402 16.255 1 2670000 57080 6659 38094 38957 66608 66608 0.06249400013939521 RYVIIPTTF 9 Unmodified _RYVIIPTTF_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.77392578125 2 555.321317 1108.62808 0.2926 0.00016249 0.28935 0.00016068 0.58195 0.00032317 555.3219117762579 70.191 0.2173 69.712 69.602 69.819 -0.47903 22 12 3 0 0 0 0.19205 1 38335 38335 14.838 8.6325 1 1774600 57081 5996 38095 38958 66609 66609 0.07811192891063001 RYVIIPTTF 9 Unmodified _RYVIIPTTF_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3216552734375 2 555.321317 1108.62808 0.54014 0.00029995 -0.12279 -6.819E-05 0.41734 0.00023176 555.3211692089834 69.603 0.4519 69.634 69.431 69.883 0.030922 83 24 5 0 0 0 0.0088174 2 38177 38177;38282 103.75 67.621 1 208710000 57082 5996 38095 38958 66610;66611 66610 0.07811192891063001 RYVIIPTTF 9 Unmodified _RYVIIPTTF_ 0 0 0 ENST00000527129.1_1_11:76831698-76834913:+|nuORF;ENSG00000149260|ENST00000648180|CAPN5 ENST00000527129.1_1_11:76831698-76834913:+|nuORF ENST00000527129.1_1_11:76831698-76834913:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3215942382812 2 555.321317 1108.62808 1.2194 0.00067714 0.06623 3.6779E-05 1.2856 0.00071392 555.3212651578134 89.686 1.2261 83.511 82.815 84.041 -6.1757 195 68 4 0 0 0 0.0090948 5 58800 58800;58932;59056;59179;59299 85.272 52.967 1 239420000 57083 5996 38095 38958 66612;66613;66614;66615;66616 66612 0.07811192891063001 RYVITIEDF 9 Unmodified _RYVITIEDF_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3076782226562 2 578.305864 1154.59717 -0.04288 -2.4798E-05 2.0903 0.0012088 2.0474 0.001184 578.3069936762002 69.593 0.36517 69.114 68.925 69.29 -0.47903 26 15 2 0 0 0 0.11784 1 38044 38044 31.268 9.5217 1 1635000 57084 6854 38096 38959 66617 66617 0.02605994786199517 RYVKKLGDF 9 Unmodified _RYVKKLGDF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8854675292969 3 375.885353 1124.63423 -0.4512 -0.0001696 0.9657 0.00036299 0.5145 0.00019339 375.8856331236026 25.239 0.21756 25.239 25.128 25.346 0 26 10 3 0 0 0 0.38785 1 12913 12913 17.443 11.251 1 1754600 57085 1279 38097 38960 66618 66618 0.07689711122611698 RYVKKLGDF 9 Unmodified _RYVKKLGDF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8850708007812 3 375.885353 1124.63423 0.18253 6.8611E-05 -1.4189 -0.00053334 -1.2364 -0.00046473 375.8847319966336 25.098 0.18374 25.123 24.998 25.181 0.024429 17 8 3 0 0 0 0.0090524 1 12949 12949 69.338 47.748 1 46609000 57086 1279 38097 38960 66619 66619 0.07689711122611698 RYVKKLGDF 9 Unmodified _RYVKKLGDF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8858947753906 3 375.885353 1124.63423 1.2629 0.00047472 0.14837 5.5772E-05 1.4113 0.00053049 375.8853420654575 28.634 0.42137 25.486 25.212 25.633 -3.1482 79 21 5 0 0 0 0.017075 2 15992 15872;15992 53.317 36.751 1 243040000 57087 1279 38097 38960 66620;66621 66621 0.07689711122611698 RYVKKLGDF 9 Unmodified _RYVKKLGDF_ 0 0 0 ENSG00000079459|ENST00000220584|FDFT1;nc|ENSG00000079459|P37268-4|FDFT1;nc|ENSG00000079459|P37268-3|FDFT1;nc|ENSG00000079459|P37268-2|FDFT1;nc|ENSG00000079459|P37268-5|FDFT1;ENST00000446331.6_1_8:11660331-11696115:+|nuORF ENSG00000079459|ENST00000220584|FDFT1 ENSG00000079459|ENST00000220584|FDFT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3246459960938 2 563.324391 1124.63423 0.93983 0.00052943 -0.10998 -6.1954E-05 0.82985 0.00046748 563.3240322534325 28.619 0.26934 25.471 25.323 25.592 -3.1482 23 13 2 0 0 0 0.0093064 1 15956 15956 83.429 66.316 1 12583000 57088 1279 38097 38960 66622 66622 0.07689711122611698 RYVKRNKKLNS 11 Unmodified _RYVKRNKKLNS_ 0 0 0 REV__nc|ENSG00000286053|L0R819|ASDURF REV__nc|ENSG00000286053|L0R819|ASDURF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 703.4240112304688 2 703.422959 1404.83137 NaN NaN NaN NaN NaN NaN NaN 96.207 1 96.2 95.7 96.7 -0.007019 0 0 0 0.94184 1 53437 53437 1.1933 0.84271 1 + 57089 30019 38098 38961 66623 66623 0.14514310665413177 RYVLYPNNF 9 Unmodified _RYVLYPNNF_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.306396484375 2 593.306198 1184.59784 NaN NaN NaN NaN NaN NaN NaN 55.421 1 55.352 54.852 55.852 -0.068737 0 0 0 0.015278 1 30120 30120 120.45 74.429 1 57090 10446 38099 38962 66624 66624 0.012928342258874181 RYVLYPNNF 9 Unmodified _RYVLYPNNF_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8063354492188 2 593.306198 1184.59784 0.81605 0.00048417 -3.6594 -0.0021711 -2.8433 -0.001687 593.3030206019693 61.386 0.34076 55.238 54.996 55.337 -6.1478 27 16 2 0 0 0 0.024882 1 39514 39514 58.679 29.597 1 29222000 57091 10446 38099 38962 66625 66625 0.012928342258874181 RYVLYPNNFQF 11 Unmodified _RYVLYPNNFQF_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 730.8709106445312 2 730.869694 1459.72483 0.19461 0.00014223 1.5936 0.0011647 1.7882 0.0013069 730.870591961545 72.517 0.24131 72.558 72.42 72.661 0.041725 23 10 3 0 0 0 0.33405 1 39956 39956 24.991 15.608 1 3335100 57092 10446 38100 38963 66626 66626 0.013361353802110898 RYVMTTTTL 9 Oxidation (M) _RYVM(Oxidation (M))TTTTL_ RYVM(1)TTTTL RYVM(69)TTTTL 0 0 1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.28369140625 2 551.284074 1100.5536 0.20786 0.00011459 -0.30844 -0.00017004 -0.10058 -5.5446E-05 551.2839804580323 31.085 0.36446 31.085 30.912 31.276 0 67 17 5 0 0 0 0.014417 2 16136 16136;16234 69.105 12.928 1 25691000 57093 4549 38101 38964 66627;66628 66627 828 0.007340620173863499 RYVMTTTTL 9 Oxidation (M) _RYVM(Oxidation (M))TTTTL_ RYVM(1)TTTTL RYVM(60)TTTTL 0 0 1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2845458984375 2 551.284074 1100.5536 0.40202 0.00022163 0.12052 6.6438E-05 0.52254 0.00028807 551.2841883918401 31.08 0.32187 30.978 30.839 31.161 -0.10269 45 12 4 0 0 0 0.023481 1 16120 16120 60.074 12.325 1 26457000 57094 4549 38101 38964 66629 66629 828 0.007340620173863499 RYVMTTTTL 9 Oxidation (M) _RYVM(Oxidation (M))TTTTL_ RYVM(1)TTTTL RYVM(60)TTTTL 0 0 1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.2842407226562 2 551.284074 1100.5536 -0.12535 -6.9105E-05 0.56937 0.00031389 0.44402 0.00024478 551.2842367379292 30.893 0.34975 30.923 30.759 31.109 0.030104 38 14 3 0 0 0 0.023481 1 16131 16131 60.074 12.325 1 4847700 57095 4549 38101 38964 66630 66630 828 0.007340620173863499 RYVMTTTTL 9 Oxidation (M) _RYVM(Oxidation (M))TTTTL_ RYVM(1)TTTTL RYVM(79)TTTTL 0 0 1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2843627929688 2 551.284074 1100.5536 0.82021 0.00045217 -0.59894 -0.00033019 0.22126 0.00012198 551.2839364108207 35.586 0.51729 31.393 31.161 31.678 -4.1928 111 32 4 0 0 0 0.010611 1 20655 20655 78.728 22.551 1 132340000 57096 4549 38101 38964 66631 66631 828 0.007340620173863499 RYVMTTTTL 9 Unmodified _RYVMTTTTL_ 0 0 0 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2869262695312 2 543.286617 1084.55868 1.0763 0.00058473 0.066573 3.6168E-05 1.1429 0.0006209 543.2866621437377 47.358 0.60162 42.277 42.003 42.605 -5.0805 118 38 5 0 0 0 0.013041 1 29419 29419 71.922 6.6873 1 273970000 57097 4549 38101 38965 66632 66632 0.019783658800179182 RYVNNYTNSF 10 Unmodified _RYVNNYTNSF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.2991333007812 2 639.299101 1276.58365 -0.57471 -0.00036741 1.1373 0.00072708 0.5626 0.00035967 639.2998084596461 36.883 0.21982 36.633 36.531 36.751 -0.2497 15 9 2 0 0 0 0.11322 1 19375 19375 51.63 37.724 1 3444200 57098 4959 38102 38966 66633 66633 -0.043578629930379975 RYVNNYTNSF 10 Unmodified _RYVNNYTNSF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.8004760742188 2 639.299101 1276.58365 1.4402 0.00092075 -2.2663 -0.0014488 -0.82604 -0.00052808 639.2972296404928 41.687 0.34069 37.079 36.936 37.277 -4.6079 37 21 3 0 0 0 0.020986 1 25050 25050 96.367 54.527 1 9227200 57099 4959 38102 38966 66634 66634 -0.043578629930379975 RYVPFDAAVDF 11 Unmodified _RYVPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.3226928710938 2 650.322045 1298.62954 0.42108 0.00027384 0.14014 9.1138E-05 0.56122 0.00036498 650.3219976639758 71.363 0.3709 70.886 70.726 71.097 -0.47735 46 15 4 0 0 0 0.43662 2 39116 39010;39116 19.626 10.566 1 3872600 57100 5216 38103 38967 66635;66636 66636 -0.007832178108401422 RYVPFDAAVDF 11 Unmodified _RYVPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.3218994140625 2 650.322045 1298.62954 1.1377 0.00073989 -1.6884 -0.001098 -0.55069 -0.00035813 650.3206299367279 88.291 0.52009 82.116 81.939 82.459 -6.1757 45 28 2 0 0 0 0.010729 1 58297 58297 67.081 37.24 1 9960800 57101 5216 38103 38967 66637 66637 -0.007832178108401422 RYVPGLLLSYL 11 Unmodified _RYVPGLLLSYL_ 0 0 0 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.3824462890625 2 647.381906 1292.74926 2.1339 0.0013815 1.3017 0.00084272 3.4357 0.0022242 647.3826550757186 94.05 0.37547 94.064 93.837 94.212 0.014252 32 14 3 0 0 0 0.44182 1 52279 52279 19.362 7.1872 1 2323900 57102 5368 38104 38968 66638 66638 0.1145939553377957 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.873291015625 3 386.873336 1157.59818 -0.0049625 -1.9198E-06 -0.41758 -0.00016155 -0.42254 -0.00016347 386.87315700430594 34.716 0.58212 34.743 34.561 35.143 0.027401 106 26 5 0 0 0 0.037253 2 18259 18259;18367 51.415 38.559 1 341440000 57103 2901 38105 38969 66639;66640 66639 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8063354492188 2 579.806365 1157.59818 0.45491 0.00026376 -1.1446 -0.00066363 -0.68966 -0.00039987 579.8058825175359 34.716 0.8433 34.743 34.367 35.211 0.027401 107 38 5 0 0 0 0.040733 2 18294 18294;18407 53.833 36.72 1 154490000 57104 2901 38105 38969 66641;66642 66641 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8737487792969 3 386.873336 1157.59818 1.2413 0.00048024 -0.42918 -0.00016604 0.81217 0.00031421 386.8732257074158 39.092 0.92025 34.641 34.361 35.281 -4.4509 163 57 5 0 0 0 0.044296 3 23016 23016;23151;23290 47.594 38.211 1 1047299999.9999999 57105 2901 38105 38969 66643;66644;66645 66643 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8067626953125 2 579.806365 1157.59818 0.86888 0.00050378 -0.42111 -0.00024416 0.44777 0.00025962 579.8061704555591 39.101 0.83438 34.65 34.399 35.233 -4.4509 146 52 5 0 0 0 0.20507 3 23029 23029;23163;23302 18.146 11.882 1 725140000 57106 2901 38105 38969 66646;66647;66648 66646 0.025682539457420717 RYVPRASYF 9 Unmodified _RYVPRASYF_ 0 0 0 ENSG00000112576|ENST00000372991|CCND3;ENST00000510058.1_1_6:41904922-41909441:-|nuORF;nc|ENSG00000112576|P30281-3|CCND3 ENSG00000112576|ENST00000372991|CCND3 ENSG00000112576|ENST00000372991|CCND3 MSMS AL20221201_MKP_PDAC_01 4 579.8057861328125 2 579.806365 1157.59818 NaN NaN NaN NaN NaN NaN NaN 48.568 1 43.172 42.672 43.672 -5.3961 0 0 0 0.45218 1 30266 30266 18.146 3.3081 1 57107 2901 38105 38969 66649 66649 0.025682539457420717 RYVPSTPWFL 10 Unmodified _RYVPSTPWFL_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;nc|ENSG00000085721|Q9NYV6-4|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.3370971679688 2 633.337498 1264.66044 0.86051 0.00054499 -0.47172 -0.00029876 0.38879 0.00024623 633.8389384577915 98.483 0.1282 92.307 92.237 92.365 -6.1757 17 8 3 0 0 0 0.025861 1 65330 65330 70.332 32.358 1 33386000 57108 1414 38106 38970 66650 66650 0.038699802940755035 RYVPVAGL 8 Unmodified _RYVPVAGL_ 0 0 0 REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7619018554688 2 437.760895 873.507237 1.2975 0.00056801 -0.29837 -0.00013061 0.99917 0.0004374 437.76063241546456 89.378 1.0154 83.203 82.636 83.651 -6.1757 106 56 2 0 0 0 0.5284 1 58876 58876 32.117 0 1 27058000 + 57109 23886 38107 38971 66651 66651 0.06542409968267293 RYVPVGLLERL 11 Unmodified _RYVPVGLLERL_ 0 0 0 nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5785216-5787684:-|nuORF nc|ENSG00000141994|Q96G46-3|DUS3L nc|ENSG00000141994|Q96G46-3|DUS3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.9351501464844 3 438.934595 1313.78196 1.0655 0.00046769 -0.41967 -0.00018421 0.64583 0.00028348 438.9344496523472 65.724 0.26028 65.732 65.611 65.871 0.0077362 19 12 2 0 0 0 0.02135 1 36066 36066 41.567 30.501 1 3903200 57110 5386 38108 38972 66652 66652 0.13761602656632022 RYVPVGLLERL 11 Unmodified _RYVPVGLLERL_ 0 0 0 nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5785216-5787684:-|nuORF nc|ENSG00000141994|Q96G46-3|DUS3L nc|ENSG00000141994|Q96G46-3|DUS3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.9351501464844 3 438.934595 1313.78196 1.2976 0.00056955 -0.26061 -0.00011439 1.037 0.00045516 438.9344479706242 94.577 0.21245 88.401 88.25 88.463 -6.1757 19 11 2 0 0 0 0.055321 1 62626 62626 35.793 24.728 1 12052000 57111 5386 38108 38972 66653 66653 0.13761602656632022 RYVPVGLLERL 11 Unmodified _RYVPVGLLERL_ 0 0 0 nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5785216-5787684:-|nuORF nc|ENSG00000141994|Q96G46-3|DUS3L nc|ENSG00000141994|Q96G46-3|DUS3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8982543945312 2 657.898254 1313.78196 0.94204 0.00061977 -1.3721 -0.00090269 -0.43003 -0.00028292 657.8972469845819 94.547 0.14745 88.371 88.315 88.463 -6.1757 10 7 2 0 0 0 0.072475 1 62638 62638 46.022 20.623 1 5477600 57112 5386 38108 38972 66654 66654 0.13761602656632022 RYVQQLQRL 9 Unmodified _RYVQQLQRL_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3510131835938 2 602.351471 1202.68839 -0.3513 -0.00021161 -0.3213 -0.00019353 -0.6726 -0.00040514 602.3512741166428 31.549 0.27504 31.579 31.457 31.732 0.030106 37 12 4 0 0 0 0.024189 1 16512 16512 65.235 25.278 1 28841000 57113 781 38109 38973 66655 66655 0.09515303274179132 RYVQQLQRL 9 Unmodified _RYVQQLQRL_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3516845703125 2 602.351471 1202.68839 0.698 0.00042044 -1.9126 -0.0011521 -1.2146 -0.00073163 602.3512095684544 35.829 0.5929 31.637 31.425 32.018 -4.1928 93 36 4 0 0 0 0.018061 1 20773 20773 71.922 46.931 1 57410000 57114 781 38109 38973 66656 66656 0.09515303274179132 RYVQQLQRL 9 Unmodified _RYVQQLQRL_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.9039001464844 3 401.903406 1202.68839 1.4163 0.00056921 -0.1353 -5.4377E-05 1.281 0.00051483 401.90340026056657 35.834 0.458 31.641 31.425 31.883 -4.1928 92 28 4 0 0 0 0.069655 2 20817 20817;20944 40.239 21.866 1 96702000 57115 781 38109 38973 66657;66658 66657 0.09515303274179132 RYVQQLQRL 9 Unmodified _RYVQQLQRL_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 602.351471 1202.68839 0.11297 6.8049E-05 1.0587 0.00063773 1.1717 0.00070578 602.3524223338585 31.719 0.11964 31.59 31.503 31.623 -0.12915 -0.011827 0.0017623 NaN 71.922 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1554200 57116 781 38109 38973 0.09515303274179132 RYVQQLQRL 9 Unmodified _RYVQQLQRL_ 0 0 0 ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 ENSG00000055950|ENST00000318364|MRPL43 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 401.903406 1202.68839 -0.41381 -0.00016631 -0.32627 -0.00013113 -0.74007 -0.00029744 401.90369109329623 31.524 0.36639 31.554 31.346 31.712 0.030106 -0.043474 -0.00020633 NaN 40.239 37 16 4 NaN NaN NaN NaN 0 NaN NaN 0 22209000 57117 781 38109 38973 0.09515303274179132 RYVRKFVLM 9 Unmodified _RYVRKFVLM_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5744934082031 3 404.574233 1210.70087 0.80113 0.00032412 0.16579 6.7075E-05 0.96692 0.00039119 404.57426786866756 43.122 0.25165 38.357 38.225 38.477 -4.7648 22 16 2 0 0 0 0.30562 1 26134 26134 11.495 5.7113 1 14295000 57118 4247 38110 38974 66659 66659 0.10394623412867077 RYVRKFVLM 9 Unmodified _RYVRKFVLM_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.909912109375 3 404.574233 1210.70087 1.3172 0.00053292 -0.245 -9.9121E-05 1.0722 0.0004338 404.57419433663284 88.361 0.52009 82.186 81.939 82.459 -6.1757 87 28 4 0 0 0 0.038285 2 58191 58191;58317 38.176 28.632 1 95088000 57119 4247 38110 38974 66660;66661 66660 0.10394623412867077 RYVRKFVLM 9 Unmodified _RYVRKFVLM_ 0 0 0 ENSG00000130724|ENST00000312547|CHMP2A;ENST00000597209.1_1_19:59063514-59065579:-|nuORF ENSG00000130724|ENST00000312547|CHMP2A ENSG00000130724|ENST00000312547|CHMP2A MSMS AL20221201_MKP_PDAC_01 4 606.35888671875 2 606.357711 1210.70087 NaN NaN NaN NaN NaN NaN NaN 88.297 1 82.122 81.622 82.622 -6.1757 0 0 0 0.17247 1 58247 58247 34.102 24.719 1 57120 4247 38110 38974 66662 66662 0.10394623412867077 RYVRRLDFF 9 Unmodified _RYVRRLDFF_ 0 0 0 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-5|CSNK1G3;nc|ENSG00000169118|Q9HCP0-2|CSNK1G1;ENSG00000133275|ENST00000255641|CSNK1G2;ENSG00000169118|ENST00000303052|CSNK1G1;nc|ENSG00000151292|Q9Y6M4-3|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4|CSNK1G3;nc|ENSG00000151292|Q9Y6M4-2|CSNK1G3;ENSG00000151292|ENST00000696905|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 nc|ENSG00000151292|Q9Y6M4-6|CSNK1G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8552856445312 2 636.354014 1270.69348 0.19078 0.00012141 -0.19563 -0.00012449 -0.0048489 -3.0856E-06 636.3542802445154 43.88 0.12225 43.864 43.78 43.902 -0.015667 8 5 2 0 0 0 0.023481 1 23530 23530 60.074 38.537 1 26071000 57121 4502 38111 38975 66663 66663 0.06895607136789295 RYVTDTFSQI 10 Unmodified _RYVTDTFSQI_ 0 0 0 REV__ENSG00000218823|ENST00000404991|PAPOLB;REV__nc|ENSG00000115421|Q9BWT3-2|PAPOLG REV__ENSG00000218823|ENST00000404991|PAPOLB MSMS AL20221201_MKP_PDAC_01 4 410.5433349609375 3 410.543544 1228.6088 NaN NaN NaN NaN NaN NaN NaN 30.865 1 27.368 26.868 27.868 -3.497 0 0 0 0.7417 1 17448 17448 8.9762 3.5735 1 + 57122 24354;18980 38112 38976 66664 66664 0.003641918095127039 RYVTTFDFF 9 Unmodified _RYVTTFDFF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.2933959960938 2 598.292756 1194.57096 -0.044873 -2.6847E-05 2.1112 0.0012631 2.0663 0.0012362 598.2936727942209 80.073 0.42343 80.131 79.746 80.17 0.057587 29 16 3 0 0 0 0.05483 1 44203 44203 43.772 22.026 1 12260000 57123 3392 38113 38977 66665 66665 -0.01854274385300414 RYVTTFDFF 9 Unmodified _RYVTTFDFF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2916259765625 2 598.292756 1194.57096 0.88075 0.00052695 0.10696 6.3994E-05 0.98771 0.00059094 598.292757170164 98.143 0.1361 91.967 91.891 92.027 -6.1757 16 8 2 0 0 0 0.036857 1 65047 65047 51.63 32.373 1 32639000 57124 3392 38113 38977 66666 66666 -0.01854274385300414 RYVVFAEMR 9 Unmodified _RYVVFAEMR_ 0 0 0 REV__nc|ENSG00000106853|Q14914-2|PTGR1 REV__nc|ENSG00000106853|Q14914-2|PTGR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.87451171875 3 390.874459 1169.60155 -0.32843 -0.00012838 -0.57763 -0.00022578 -0.90606 -0.00035416 390.8742388086741 36.93 0.25401 36.952 36.816 37.07 0.021545 21 11 2 0 0 0 0.55144 1 19619 19619 2.4985 0 1 1396000 + 57125 18541 38114 38978 66667 66667 0.023531807281187866 RYVVTSVSW 9 Unmodified _RYVVTSVSW_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7921752929688 2 548.792924 1095.57129 0.49031 0.00026908 -0.001224 -6.7172E-07 0.48908 0.00026841 548.7927698532767 52.852 0.29623 52.789 52.664 52.961 -0.063423 32 14 3 0 0 0 0.032796 1 28637 28637 53.833 6.0841 1 9720600 57126 2409;13961 38115 38979 66668 66668 0.02733145334582332 RYVVTSVSW 9 Unmodified _RYVVTSVSW_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MSMS AL20221201_MKP_PDAC_01 4 548.7936401367188 2 548.792924 1095.57129 NaN NaN NaN NaN NaN NaN NaN 58.995 1 52.92 52.42 53.42 -6.0745 0 0 0 0.13831 1 37840 37840 38.176 5.3899 1 57127 2409;13961 38115 38979 66669 66669 0.02733145334582332 RYVWMNIN 8 Unmodified _RYVWMNIN_ 0 0 0 REV__ENST00000287396.2_1_8:124515615-124544254:-|nuORF REV__ENST00000287396.2_1_8:124515615-124544254:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2742309570312 2 548.273844 1094.53313 NaN NaN NaN NaN NaN NaN NaN 95.683 1 95.683 95.183 96.183 0 0 0 0 0.97444 1 52884 52884 0.69038 0 1 + 57128 21345 38116 38980 66670 66670 -0.010350638517365951 RYWFWIRNC 9 Unmodified _RYWFWIRNC_ 0 0 0 ENST00000498642.5_1_1:19923574-19948639:+|nuORF ENST00000498642.5_1_1:19923574-19948639:+|nuORF ENST00000498642.5_1_1:19923574-19948639:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.3269653320312 2 672.326942 1342.63933 NaN NaN NaN NaN NaN NaN NaN 92.54 1 92.54 92.04 93.04 0 0 0 0 0.8622 1 51170 51170 0 0 1 57129 14427 38117 38981 66671 66671 -0.018283082864172684 RYWGECKELI 10 Unmodified _RYWGECKELI_ 0 0 0 REV__ENSG00000088538|ENST00000266037|DOCK3 REV__ENSG00000088538|ENST00000266037|DOCK3 MSMS AL20221201_MKP_PDAC_01 4 432.8861999511719 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 24.662 1 21.779 21.279 22.279 -2.8831 0 0 0 0.97044 1 13442 13442 3.8763 0 1 + 57130 17806 38118 38982 66672 66672 -0.002748713086020871 RYWIQLRRERK 11 Unmodified _RYWIQLRRERK_ 0 0 0 REV__ENSG00000115286|ENST00000233627|NDUFS7 REV__ENSG00000115286|ENST00000233627|NDUFS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 802.4668579101562 2 802.468232 1602.92191 NaN NaN NaN NaN NaN NaN NaN 63.671 1 63.184 62.684 63.684 -0.48617 0 0 0 0.9435 1 34726 34726 0 0 1 + 57131 18969 38119 38983 66673 66673 0.1445677971362329 RYWLTVVEHTY 11 Unmodified _RYWLTVVEHTY_ 0 0 0 REV__ENST00000554619.5_1_12:56361683-56363594:+|nuORF REV__ENST00000554619.5_1_12:56361683-56363594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 733.8756713867188 2 733.874976 1465.7354 0.17381 0.00012755 -0.49404 -0.00036256 -0.32023 -0.00023501 733.8745843561223 99.811 0.27843 93.635 93.49 93.769 -6.1757 58 19 4 0 0 0 0.65108 1 66534 66534 8.7454 0.58988 1 177090000 + 57132 19384 38120 38984 66674 66674 0.02116118034655301 RYWRQIEEQYM 11 Unmodified _RYWRQIEEQYM_ 0 0 0 REV__ENST00000546787.1_1_12:113730842-113731967:+|nuORF REV__ENST00000546787.1_1_12:113730842-113731967:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.37890625 2 801.3801 1600.74565 NaN NaN NaN NaN NaN NaN NaN 59.788 1 59.788 59.288 60.288 0 0 0 0 0.94301 1 33329 33329 0.35063 0.043601 1 + 57133 28665 38121 38985 66675 66675 -0.030696423024210162 RYWWAGRYF 9 Unmodified _RYWWAGRYF_ 0 0 0 REV__ENSG00000130720|ENST00000372338|FIBCD1 REV__ENSG00000130720|ENST00000372338|FIBCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.8192138671875 2 652.819807 1303.62506 0.83736 0.00054664 -1.2208 -0.00079698 -0.38347 -0.00025034 652.819285038759 47.684 0.16325 47.646 47.6 47.764 -0.038643 12 7 3 0 0 0 0.54444 1 25745 25745 4.756 0.42677 1 1979500 + 57134 19739 38122 38986 66676 66676 -0.014606374430741198 RYWWAGRYF 9 Unmodified _RYWWAGRYF_ 0 0 0 REV__ENSG00000130720|ENST00000372338|FIBCD1 REV__ENSG00000130720|ENST00000372338|FIBCD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 652.819807 1303.62506 0.83736 0.00054664 -1.2208 -0.00079698 -0.38347 -0.00025034 652.819285038759 47.684 0.16325 47.646 47.6 47.764 -0.038643 -0.0084193 0.0011045 NaN 4.756 12 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1979500 + 57135 19739 38122 38986 -0.014606374430741198 RYWYMYEH 8 Unmodified _RYWYMYEH_ 0 0 0 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 REV__nc|ENSG00000283063|P0DPF7|TRBV6-3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.5151062011719 3 416.514931 1246.52296 -0.80655 -0.00033594 -0.25592 -0.00010659 -1.0625 -0.00044253 416.51507943288834 28.415 0.32785 28.415 28.251 28.579 0 58 18 4 0 0 0 0.80676 1 14748 14748 1.6526 0.58116 1 15616000 + 57136 30009 38123 38987 66677 66677 -0.0904367157697834 RYYEYNHDLF 10 Unmodified _RYYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 710.8215942382812 2 710.320034 1418.62551 0.83191 0.00059092 0.35007 0.00024866 1.182 0.00083959 710.8217856139848 50.057 0.21271 44.517 44.408 44.62 -5.5391 21 13 2 0 0 0 0.0055438 1 31352 31352 96.936 79.823 1 12204000 57137 6145 38124 38988 66678 66678 -0.067053073045372 RYYEYNHDLF 10 Unmodified _RYYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.2464599609375 3 473.882448 1418.62551 1.0562 0.00050052 0.44231 0.00020961 1.4985 0.00071012 473.8825916183404 50.075 0.30262 44.536 44.408 44.71 -5.5391 29 19 2 0 0 0 0.22994 1 31413 31413 16.275 12.687 1 25176000 57138 6145 38124 38988 66679 66679 -0.067053073045372 RYYFEGIKQTF 11 Unmodified _RYYFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.9169006347656 3 484.58211 1450.7245 0.61467 0.00029786 0.15975 7.7413E-05 0.77442 0.00037527 484.5822280081467 52.875 0.17686 52.811 52.724 52.901 -0.063423 20 8 3 0 0 0 0.38151 1 28669 28669 22.486 19.643 1 2184800 57139 1846 38125 38989 66680 66680 0.017167156603363765 RYYGAISKL 9 Unmodified _RYYGAISKL_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.8035888671875 2 535.803291 1069.59203 0.14511 7.7749E-05 -0.32707 -0.00017524 -0.18196 -9.7495E-05 535.8034347563016 34.276 0.21223 34.304 34.203 34.416 0.027401 19 9 3 0 0 0 0.028475 1 18077 18077 56.177 1.4035 1 3230100 57140 7161 38126 38990 66681 66681 0.06001735714221468 RYYGAISKL 9 Unmodified _RYYGAISKL_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS AL20221201_MKP_PDAC_01 4 535.8035888671875 2 535.803291 1069.59203 NaN NaN NaN NaN NaN NaN NaN 38.283 1 33.915 33.415 34.415 -4.3689 0 0 0 0.053277 1 22561 22561 56.177 1.4035 1 57141 7161 38126 38990 66682 66682 0.06001735714221468 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.302490234375 2 588.301447 1174.58834 0.11742 6.9081E-05 0.92086 0.00054175 1.0383 0.00061083 588.3020338684953 33.203 0.35987 33.231 32.978 33.338 0.028931 41 15 4 0 0 0 0.0093238 1 17435 17435 90.135 52.161 1 20521000 57142 10274 38127 38991 66683 66683 0.008030659403630125 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5367431640625 3 392.536724 1174.58834 -0.11096 -4.3556E-05 1.0829 0.00042507 0.97193 0.00038152 392.53705226169996 33.192 0.29295 33.221 33.093 33.386 0.028934 31 12 4 0 0 0 0.01085 1 17445 17445 78.06 67.162 1 7900100 57143 10274 38127 38991 66684 66684 0.008030659403630125 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.5375671386719 3 392.536724 1174.58834 1.4266 0.00056 0.286 0.00011227 1.7126 0.00067227 392.5369956420398 37.086 0.40282 32.803 32.571 32.974 -4.2835 48 24 2 0 0 0 0.026499 2 21744 21611;21744 57.249 40.444 1 47307000 57144 10274 38127 38991 66685;66686 66686 0.008030659403630125 RYYGNISRF 9 Unmodified _RYYGNISRF_ 0 0 0 ENST00000461880.5_1_6:31847863-31852380:-|nuORF;ENST00000494816.5_1_6:31847863-31852859:-|nuORF;ENST00000480912.5_1_6:31847863-31860642:-|nuORF;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2 ENST00000461880.5_1_6:31847863-31852380:-|nuORF ENST00000461880.5_1_6:31847863-31852380:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3025512695312 2 588.301447 1174.58834 1.0778 0.00063409 -0.76838 -0.00045204 0.30944 0.00018204 588.3010241693217 37.072 0.43413 32.788 32.54 32.974 -4.2835 63 26 3 0 0 0 0.073961 2 21629 21629;21758 49.554 37.914 1 32633000 57145 10274 38127 38991 66687;66688 66687 0.008030659403630125 RYYHCAVTL 9 Carbamidomethyl (C) _RYYHC(Carbamidomethyl (C))AVTL_ RYYHC(1)AVTL RYYHC(59)AVTL 0 1 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.7896118164062 2 591.789858 1181.56516 0.59568 0.00035252 -2.7954 -0.0016543 -2.1997 -0.0013018 591.7899582661345 35.555 0.60881 31.362 31.04 31.648 -4.1928 123 37 5 0 0 0 0.024882 1 20689 20689 58.679 32.411 1 45475000 57146 10423 38128 38992 66689 66689 938 -0.01835696168609502 RYYINPRYL 9 Unmodified _RYYINPRYL_ 0 0 0 ENST00000535357.5_1_12:19283009-19360212:+|nuORF ENST00000535357.5_1_12:19283009-19360212:+|nuORF ENST00000535357.5_1_12:19283009-19360212:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5198364257812 3 419.89614 1256.66659 1.0664 0.00044778 -0.3976 -0.00016695 0.6688 0.00028082 420.23012111756213 46.515 0.22711 46.482 46.369 46.596 -0.033417 17 10 2 0 0 0 0.21144 1 24989 24989 7.1017 4.1065 1 1307100 57147 14969 38129 38993 66690 66690 0.048524985256108266 RYYISANVTGF 11 Unmodified _RYYISANVTGF_ 0 0 0 ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG ENSG00000148154|ENST00000374279|UGCG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8884582519531 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 31.933 1 31.933 31.433 32.433 0 0 0 0 0.88164 1 16653 16653 4.1166 1.3814 1 57148 5897 38130 38994 66691 66691 0.0072018456346540916 RYYKNIGLGF 10 Unmodified _RYYKNIGLGF_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11;ENST00000599167.5_1_19:49999677-50000690:+|nuORF;ENST00000600027.5_1_19:49999677-50000944:+|nuORF ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.835205078125 2 615.835123 1229.65569 0.73468 0.00045244 -0.44747 -0.00027557 0.28721 0.00017688 615.834723650621 47.85 0.10567 47.811 47.743 47.849 -0.038643 7 4 2 0 0 0 0.56675 1 25804 25804 10.074 3.3508 1 907710 57149 5423 38131 38995 66692 66692 0.05005096151307953 RYYPFRGSI 9 Unmodified _RYYPFRGSI_ 0 0 0 REV__ENSG00000186564|ENST00000334793|FOXD2;REV__ENSG00000204779|ENST00000377420|FOXD4L5 REV__ENSG00000186564|ENST00000334793|FOXD2 MSMS AL20221201_MKP_PDAC_01 4 387.2073059082031 3 386.873336 1157.59818 NaN NaN NaN NaN NaN NaN NaN 42.496 1 37.811 37.311 38.311 -4.6846 0 0 0 0.75456 1 25681 25681 7.609 1.8771 1 + 57150 23581;23434 38132 38996 66693 66693 0.025682539457420717 RYYVAEKY 8 Unmodified _RYYVAEKY_ 0 0 0 ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ENSG00000113263|ENST00000422843|ITK ENST00000519402.5_1_5:156607865-156667213:+|nuORF ENST00000519402.5_1_5:156607865-156667213:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5229187011719 3 364.522192 1090.54475 1.768 0.00064446 0.29364 0.00010704 2.0616 0.0007515 364.522152651668 34.133 0.17295 30.148 30.097 30.27 -3.9853 15 9 2 0 0 0 0.80232 1 19664 19664 3.5965 0 1 5860000 57151 2951 38133 38997 66694 66694 0.003094564432331026 RYYVAEKY 8 Unmodified _RYYVAEKY_ 0 0 0 ENST00000519402.5_1_5:156607865-156667213:+|nuORF;ENSG00000113263|ENST00000422843|ITK ENST00000519402.5_1_5:156607865-156667213:+|nuORF ENST00000519402.5_1_5:156607865-156667213:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 364.522192 1090.54475 1.768 0.00064446 0.29364 0.00010704 2.0616 0.0007515 364.522152651668 34.133 0.17295 30.148 30.097 30.27 -3.9853 -0.19217 -0.00031413 NaN 3.5965 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 5860000 57152 2951 38133 38997 0.003094564432331026 RYYYSDNF 8 Unmodified _RYYYSDNF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.4985046386719 3 376.497935 1126.47197 1.2975 0.00048852 0.9487 0.00035718 2.2462 0.0008457 376.49813532030606 33.276 0.24311 29.29 29.143 29.386 -3.9853 30 14 3 0 0 0 0.80143 1 19079 19079 3.9444 0 1 21403000 57153 6145 38134 38998 66695 66695 -0.08620297350216788 RYYYYHRQYRR 11 Unmodified _RYYYYHRQYRR_ 0 0 0 ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10 ENST00000565031.1_1_16:2009625-2011290:+|nuORF ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 862.4324951171875 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 70.292 1 69.813 69.313 70.313 -0.47903 0 0 0 0.9435 1 38442 38442 0 0 1 57154 5292 38135 38999 66696 66696 0.016630259202429443 RYYYYHRQYRR 11 Unmodified _RYYYYHRQYRR_ 0 0 0 ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10 ENST00000565031.1_1_16:2009625-2011290:+|nuORF ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 862.4317016601562 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 66.869 1 60.694 60.194 61.194 -6.1757 0 0 0 0.94338 1 43521 43521 0.30703 0.30703 1 57155 5292 38135 38999 66697 66697 0.016630259202429443 RYYYYHRQYRR 11 Unmodified _RYYYYHRQYRR_ 0 0 0 ENST00000565031.1_1_16:2009625-2011290:+|nuORF;nc|ENSG00000140990|O96000-2|NDUFB10;ENSG00000140990|ENST00000268668|NDUFB10 ENST00000565031.1_1_16:2009625-2011290:+|nuORF ENST00000565031.1_1_16:2009625-2011290:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 862.4322509765625 2 862.431847 1722.84914 NaN NaN NaN NaN NaN NaN NaN 77.772 1 71.596 71.096 72.096 -6.1757 0 0 0 0.9435 1 50878 50878 0 0 1 57156 5292 38135 38999 66698 66698 0.016630259202429443 SAAAAAAAAAY 11 Unmodified _SAAAAAAAAAY_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;ENST00000557815.1_1_15:70348635-70349989:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3 nc|ENSG00000140332|Q04726-2|TLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7272644042969 2 454.727249 907.439946 0.46848 0.00021303 0.81172 0.00036911 1.2802 0.00058214 454.72733427127446 31.27 0.20503 31.27 31.174 31.379 0 15 9 2 0 0 0 0.025642 1 16265 16265 56.177 12.319 1 878220 57157 5225 38136 39000 66699 66699 -0.017476650333605903 SAAAFTRP 8 Unmodified _SAAAFTRP_ 0 0 0 REV__ENST00000564629.1_1_16:31470274-31471003:-|nuORF REV__ENST00000564629.1_1_16:31470274-31471003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.7192687988281 2 410.719227 819.423902 NaN NaN NaN NaN NaN NaN NaN 36.494 1 36.516 36.016 37.016 0.021545 0 0 0 0.62748 1 19337 19337 32.305 3.8186 1 + 57158 28899 38137 39001 66700 66700 0.006966735204287033 SAADFFSHY 9 Unmodified _SAADFFSHY_ 0 0 0 ENST00000536374.1_1_9:80851152-80851524:+|nuORF;ENST00000476652.2_1_9:80851152-80881675:+|nuORF;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78 ENST00000536374.1_1_9:80851152-80851524:+|nuORF ENST00000536374.1_1_9:80851152-80851524:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7250366210938 2 522.724707 1043.43486 NaN NaN NaN NaN NaN NaN NaN 55.271 1 55.271 54.771 55.771 0 0 0 0 0.18753 1 30700 30700 32.305 20.665 1 57159 5891 38138 39002 66701 66701 -0.08511968895936661 SAADFFSHY 9 Unmodified _SAADFFSHY_ 0 0 0 ENST00000536374.1_1_9:80851152-80851524:+|nuORF;ENST00000476652.2_1_9:80851152-80881675:+|nuORF;nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78 ENST00000536374.1_1_9:80851152-80851524:+|nuORF ENST00000536374.1_1_9:80851152-80851524:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7239990234375 2 522.724707 1043.43486 -0.31147 -0.00016281 -0.19444 -0.00010164 -0.50591 -0.00026445 522.7245549461034 55.909 0.21843 55.431 55.32 55.538 -0.47798 18 10 2 0 0 0 0.05447 1 30359 30359 43.858 28.61 1 1987100 57160 5891 38138 39002 66702 66702 -0.08511968895936661 SAADVVVVH 9 Unmodified _SAADVVVVH_ 0 0 0 ENST00000484284.5_1_3:38175441-38178607:-|nuORF;ENST00000489559.1_1_3:38175990-38178538:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1 ENST00000484284.5_1_3:38175441-38178607:-|nuORF ENST00000484284.5_1_3:38175441-38178607:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.745361328125 2 448.745442 895.476331 -0.094641 -4.247E-05 -0.11663 -5.2335E-05 -0.21127 -9.4805E-05 448.7452293767257 30.828 0.44315 30.828 30.607 31.051 0 33 21 2 0 0 0 0.038285 1 16014 16014 50.855 29.108 1 7249400 57161 834 38139 39003 66703 66703 0.024412118633904356 SAADVVVVH 9 Unmodified _SAADVVVVH_ 0 0 0 ENST00000484284.5_1_3:38175441-38178607:-|nuORF;ENST00000489559.1_1_3:38175990-38178538:-|nuORF;nc|ENSG00000060971|P09110-2|ACAA1;ENSG00000060971|ENST00000333167|ACAA1 ENST00000484284.5_1_3:38175441-38178607:-|nuORF ENST00000484284.5_1_3:38175441-38178607:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7461242675781 2 448.745442 895.476331 0.98874 0.00044369 0.0070808 3.1775E-06 0.99582 0.00044687 448.7454150561701 35.584 0.41201 31.391 31.201 31.613 -4.1928 56 25 3 0 0 0 0.0082281 2 20747 20607;20747 92.822 58.72 1 28038000 57162 834 38139 39003 66704;66705 66705 0.024412118633904356 SAAEGLISYAI 11 Unmodified _SAAEGLISYAI_ 0 0 0 ENSG00000159527|ENST00000683862|PGLYRP3 ENSG00000159527|ENST00000683862|PGLYRP3 ENSG00000159527|ENST00000683862|PGLYRP3 MSMS AL20221201_MKP_PDAC_01 4 547.79052734375 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 51.547 1 45.898 45.398 46.398 -5.649 0 0 0 0.040278 1 32445 32445 65.235 5.8666 1 57163 6660 38140 39004 66706 66706 0.022500020322468117 SAAEIMAVL 9 Oxidation (M) _SAAEIM(Oxidation (M))AVL_ SAAEIM(1)AVL SAAEIM(67)AVL 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7420959472656 2 460.741511 919.468469 0.62886 0.00028974 0.11722 5.4008E-05 0.74607 0.00034375 460.74165190554834 58.408 0.69827 58.408 58.154 58.853 0 83 28 4 0 0 0 0.016184 3 32457 32457;32565;32671 67.344 35.227 1 10700000 57164 7097 38141 39005 66707;66708;66709 66707 1222 0.005513165515935725 SAAEIMAVL 9 Oxidation (M) _SAAEIM(Oxidation (M))AVL_ SAAEIM(1)AVL SAAEIM(74)AVL 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.4772338867188 1 920.475745 919.468469 0.20792 0.00019138 1.2552 0.0011553 1.4631 0.0013467 920.4772169546237 58.423 0.72218 58.423 58.179 58.902 0 72 29 3 0 0 0 0.012148 2 32588 32476;32588 74.423 36.272 1 4981200 57165 7097 38141 39005 66710;66711 66711 1222 0.005513165515935725 SAAEIMAVL 9 Oxidation (M) _SAAEIM(Oxidation (M))AVL_ SAAEIM(1)AVL SAAEIM(55)AVL 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS AL20221201_MKP_PDAC_01 4 460.741943359375 2 460.741511 919.468469 NaN NaN NaN NaN NaN NaN NaN 66.077 1 59.901 59.401 60.401 -6.1757 0 0 0 0.056448 1 42950 42950 54.774 18.729 1 57166 7097 38141 39005 66712 66712 1222 0.005513165515935725 SAAEIMAVL 9 Oxidation (M) _SAAEIM(Oxidation (M))AVL_ SAAEIM(1)AVL SAAEIM(64)AVL 0 0 1 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MSMS AL20221201_MKP_PDAC_01 4 460.7425231933594 2 460.741511 919.468469 NaN NaN NaN NaN NaN NaN NaN 66.256 1 60.08 59.58 60.58 -6.1757 0 0 0 0.035065 1 43088 43088 64.236 28.192 1 57167 7097 38141 39005 66713 66713 1222 0.005513165515935725 SAAEIMAVL 9 Unmodified _SAAEIMAVL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 904.4835205078125 1 904.480831 903.473554 0.054303 4.9116E-05 0.80416 0.00072735 0.85846 0.00077646 904.4814946419763 78.882 0.2812 78.882 78.716 78.997 0 21 12 2 0 0 0 0.43463 1 43869 43869 10.824 3.5347 1 969130 57168 7097 38141 39006 66714 66714 0.017956204142024035 SAAEIMAVL 9 Unmodified _SAAEIMAVL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 904.4814453125 1 904.480831 903.473554 0.19787 0.00017897 0.89063 0.00080556 1.0885 0.00098453 904.4812586385774 79.384 0.28527 78.895 78.682 78.968 -0.48932 17 11 2 0 0 0 0.23158 1 43424 43424 20.454 8.8133 1 793970 57169 7097 38141 39006 66715 66715 0.017956204142024035 SAAEIMAVL 9 Unmodified _SAAEIMAVL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 904.4813232421875 1 904.480831 903.473554 1.1057 0.0010001 -0.23324 -0.00021096 0.87245 0.00078911 904.4805764918843 86.79 0.70663 80.614 80.118 80.825 -6.1757 59 37 2 0 0 0 0.012148 3 57131 57005;57131;57256 74.423 32.328 1 15012000 57170 7097 38141 39006 66716;66717;66718 66717 0.017956204142024035 SAAEIMAVL 9 Unmodified _SAAEIMAVL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000483706.1_1_3:53276071-53289958:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2476806640625 2 452.744053 903.473554 1.3284 0.00060143 0.78782 0.00035668 2.1162 0.00095811 452.743820417343 86.634 0.75477 80.459 80.088 80.843 -6.1757 68 40 2 0 0 0 0.016184 3 57017 57017;57134;57262 67.344 31.3 1 13420000 57171 7097 38141 39006 66719;66720;66721 66719 0.017956204142024035 SAAELRHVM 9 Oxidation (M) _SAAELRHVM(Oxidation (M))_ SAAELRHVM(1) SAAELRHVM(48) 0 0 1 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7631225585938 2 515.260933 1028.50731 -0.41307 -0.00021284 -0.20671 -0.00010651 -0.61978 -0.00031935 515.2608568256353 16.854 0.16702 16.854 16.77 16.937 0 108 41 3 0 0 0 0.044296 1 8224 8224 47.594 30.481 1 2936900 57172 5567 38142 39007 66722 66722 1022 -0.005799580940220039 SAAELRHVM 9 Oxidation (M) _SAAELRHVM(Oxidation (M))_ SAAELRHVM(1) SAAELRHVM(65) 0 0 1 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2617797851562 2 515.260933 1028.50731 0.45708 0.00023552 0.0015128 7.795E-07 0.45859 0.0002363 515.2609286249656 17.758 0.23844 15.171 15.018 15.256 -2.5866 54 32 2 0 0 0 0.018061 1 9262 9262 65.474 42.737 1 6387200 57173 5567 38142 39007 66723 66723 1022 -0.005799580940220039 SAAELRHVM 9 Oxidation (M) _SAAELRHVM(Oxidation (M))_ SAAELRHVM(1) SAAELRHVM(100) 0 0 1 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2614135742188 2 515.260933 1028.50731 0.51144 0.00026353 1.1284 0.00058145 1.6399 0.00084497 515.2611669728662 17.918 0.25825 15.331 15.249 15.507 -2.5866 37 18 3 0 0 0 0.0087923 1 9366 9366 103.42 57.398 1 6096500 57174 5567 38142 39007 66724 66724 1022 -0.005799580940220039 SAAELRHVM 9 Unmodified _SAAELRHVM_ 0 0 0 ENST00000482532.5_1_2:47387917-47389823:-|nuORF;ENSG00000198668|ENST00000356978|CALM1;ENSG00000178363|ENST00000315238|CALML3;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF ENST00000482532.5_1_2:47387917-47389823:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2646179199219 2 507.263476 1012.5124 0.68019 0.00034503 0.95145 0.00048264 1.6316 0.00082767 507.2640293624024 28.674 0.37401 25.526 25.303 25.677 -3.1482 31 18 2 0 0 0 0.0087923 2 15938 15938;16056 103.42 67.292 1 42655000 57175 5567 38142 39008 66725;66726 66725 0.00664345768586827 SAAELVDAF 9 Unmodified _SAAELVDAF_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4522705078125 1 922.451639 921.444362 0.41005 0.00037825 0.22954 0.00021174 0.6396 0.00059 922.4517807728039 66.952 0.36131 66.952 66.747 67.108 0 39 16 3 0 0 0 0.012148 2 37370 37273;37370 74.423 23.568 1 4976100 57176 3815 38143 39009 66727;66728 66728 -0.01950200610428965 SAAESFMKY 9 Oxidation (M) _SAAESFM(Oxidation (M))KY_ SAAESFM(1)KY SAAESFM(66)KY 0 0 1 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.234130859375 2 525.23405 1048.45355 -0.23017 -0.00012089 -0.049852 -2.6184E-05 -0.28002 -0.00014708 525.2339933213324 28.644 0.25874 28.644 28.503 28.761 0 21 12 2 0 0 0 0.017075 1 14779 14779 66.457 37.375 1 12848000 57177 357 38144 39010 66729 66729 43 -0.06874175316420406 SAAESVYAF 9 Unmodified _SAAESVYAF_ 0 0 0 REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6 REV__nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7218017578125 2 472.721633 943.428712 NaN NaN NaN NaN NaN NaN NaN 66.841 1 66.841 66.341 67.341 0 0 0 0 0.29524 1 37280 37280 25.399 9.5521 1 + 57178 21132 38145 39011 66730 66730 -0.045264871274753204 SAAFSLMVQPR 11 Unmodified _SAAFSLMVQPR_ 0 0 0 REV__ENST00000564978.5_2_16:28975357-28975525:+|nuORF REV__ENST00000564978.5_2_16:28975357-28975525:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2188110351562 3 402.881502 1205.62268 NaN NaN NaN NaN NaN NaN NaN 18.33 1 18.336 17.836 18.836 0.0060463 0 0 0 0.6061 1 9286 9286 12.929 7.8812 1 + 57179 28903 38146 39012 66731 66731 0.028091460369751076 SAAGVSVAF 9 Unmodified _SAAGVSVAF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.4202270507812 1 808.419945 807.412668 0.38202 0.00030883 0.44515 0.00035987 0.82716 0.0006687 808.420224878977 53.85 0.55215 53.85 53.645 54.197 0 71 25 4 0 0 0 0.0090851 3 29778 29778;29895;30010 85.357 34.502 1 28506000 57180 16111 38147 39013 66732;66733;66734 66732 0.0012585142628722679 SAAGVSVAF 9 Unmodified _SAAGVSVAF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.7137756347656 2 404.713611 807.412668 0.39594 0.00016024 0.041341 1.6731E-05 0.43728 0.00017697 404.71361868521797 53.823 0.32635 53.823 53.705 54.032 0 27 14 2 0 0 0 0.023164 1 29841 29841 60.39 26.287 1 3079000 57181 16111 38147 39013 66735 66735 0.0012585142628722679 SAAGVSVAF 9 Unmodified _SAAGVSVAF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 808.41552734375 1 808.419945 807.412668 -0.2753 -0.00022255 -0.25508 -0.00020621 -0.53037 -0.00042876 808.4198659893594 54.343 0.43553 53.876 53.707 54.143 -0.46664 28 22 2 0 0 0 0.095405 2 29515 29398;29515 34.102 12.356 1 3808500 57182 16111 38147 39013 66736;66737 66737 0.0012585142628722679 SAAGVSVAF 9 Unmodified _SAAGVSVAF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 808.4205322265625 1 808.419945 807.412668 1.4608 0.001181 -0.57243 -0.00046276 0.88839 0.00071819 808.4193065080196 61.539 0.54821 55.363 55.088 55.637 -6.1757 58 27 3 0 0 0 0.0083087 3 39656 39537;39656;39776 100.37 31.84 1 123950000 57183 16111 38147 39013 66738;66739;66740 66739 0.0012585142628722679 SAAGVSVAF 9 Unmodified _SAAGVSVAF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MSMS AL20221201_MKP_PDAC_01 4 404.7140502929688 2 404.713611 807.412668 NaN NaN NaN NaN NaN NaN NaN 61.452 1 55.304 54.804 55.804 -6.1478 0 0 0 0.014922 1 39583 39583 85.357 37.011 1 57184 16111 38147 39013 66741 66741 0.0012585142628722679 SAAHPFGK 8 Unmodified _SAAHPFGK_ 0 0 0 REV__ENST00000563315.2_2_16:50775163-50775262:-|nuORF REV__ENST00000563315.2_2_16:50775163-50775262:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.7142028808594 2 407.713945 813.413337 1.2436 0.00050703 -0.14262 -5.8148E-05 1.101 0.00044888 407.713820131283 30.689 0.43026 27.192 26.936 27.366 -3.497 49 20 3 0 0 0 0.74163 1 17291 17291 13.508 0 1 117730000 + 57185 28870 38148 39014 66742 66742 -0.000833091340041392 SAAIGCRGW 9 Unmodified _SAAIGCRGW_ 0 0 0 REV__ENST00000524697.1_8:145438664-145439010:+|nuORF REV__ENST00000524697.1_8:145438664-145439010:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.7245483398438 2 460.723987 919.433421 -0.16404 -7.5578E-05 0.80709 0.00037185 0.64305 0.00029627 460.7243790292206 76.656 0.33153 76.177 76.012 76.343 -0.47945 48 21 3 0 0 0 0.51218 1 42010 42010 6.7232 6.7232 1 3971800 + 57186 28334 38149 39015 66743 66743 -0.02951881465696715 SAAIGCRGW 9 Unmodified _SAAIGCRGW_ 0 0 0 REV__ENST00000524697.1_8:145438664-145439010:+|nuORF REV__ENST00000524697.1_8:145438664-145439010:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 460.723987 919.433421 0.5718 0.00026344 0.13221 6.0914E-05 0.70401 0.00032435 460.72416397058004 76.245 0.26451 76.245 76.105 76.37 0 0.034078 -0.0005163 NaN 6.7232 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 683330 + 57187 28334 38149 39015 -0.02951881465696715 SAAKLLTEY 9 Unmodified _SAAKLLTEY_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2749938964844 2 498.274032 994.533512 0.10144 5.0546E-05 0.27698 0.00013801 0.37842 0.00018856 498.2740867929947 43.526 0.3264 43.526 43.323 43.649 0 36 15 3 0 0 0 0.0039711 2 23584 23584;23706 121.53 50.4 1 37286000 57188 9736 38150 39016 66744;66745 66744 0.036026343490902946 SAAKLLTEY 9 Unmodified _SAAKLLTEY_ 0 0 0 ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA ENSG00000189221|ENST00000338702|MAOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2758483886719 2 498.274032 994.533512 0.94172 0.00046923 0.29585 0.00014742 1.2376 0.00061665 498.2742065008815 48.703 0.39071 43.307 43.084 43.475 -5.3961 39 22 2 0 0 0 0.036857 1 30301 30301 51.63 19.324 1 52019000 57189 9736 38150 39016 66746 66746 0.036026343490902946 SAAKNFFI 8 Unmodified _SAAKNFFI_ 0 0 0 REV__ENST00000420070.1_1_20:22528654-22528729:-|nuORF REV__ENST00000420070.1_1_20:22528654-22528729:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2459716796875 2 449.245078 896.475603 -0.15906 -7.1459E-05 0.92213 0.00041426 0.76307 0.0003428 449.2456590809665 69.52 0.34263 69.041 68.925 69.267 -0.47903 25 14 3 0 0 0 0.71527 1 38020 38020 15.847 0 1 678940 + 57190 26828 38151 39017 66747 66747 0.023224172143159194 SAAKNFFI 8 Unmodified _SAAKNFFI_ 0 0 0 REV__ENST00000420070.1_1_20:22528654-22528729:-|nuORF REV__ENST00000420070.1_1_20:22528654-22528729:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 449.245078 896.475603 0.95167 0.00042753 0.10803 4.8532E-05 1.0597 0.00047607 449.2446439722449 69.076 0.25694 69.107 68.97 69.227 0.030914 0.032856 -0.00044906 NaN 15.847 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1451500 + 57191 26828 38151 39017 0.023224172143159194 SAALECVP 8 Unmodified _SAALECVP_ 0 0 0 REV__ENSG00000109705|ENST00000382438|NKX3-2 REV__ENSG00000109705|ENST00000382438|NKX3-2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1932983398438 2 395.194196 788.37384 NaN NaN NaN NaN NaN NaN NaN 58.444 1 58.444 57.944 58.944 0 0 0 0 0.95973 1 32540 32540 8.5933 0 1 + 57192 18668 38152 39018 66748 66748 -0.02881197199747021 SAALLDGCRM 10 Unmodified _SAALLDGCRM_ 0 0 0 REV__nc|ENSG00000102900|Q8N1F7-2|NUP93 REV__nc|ENSG00000102900|Q8N1F7-2|NUP93 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2899169921875 2 518.749344 1035.48414 0.23791 0.00012342 -2.8905 -0.0014994 -2.6525 -0.001376 518.7475400654612 65.357 0.38558 65.357 65.117 65.503 0 17 14 2 0 0 0 0.22811 1 36343 36343 14.838 2.3067 1 829720 + 57193 18265 38153 39019 66749 66749 -0.03218720203017256 SAAMVFSAL 9 Oxidation (M) _SAAM(Oxidation (M))VFSAL_ SAAM(1)VFSAL SAAM(71)VFSAL 0 0 1 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.4490356445312 1 912.44953 911.442254 -0.24941 -0.00022757 -0.53244 -0.00048582 -0.78184 -0.00071339 912.4491078696472 66.204 0.54864 65.721 65.456 66.005 -0.48323 45 28 3 0 0 0 0.013323 3 36158 36050;36158;36259 71.134 37.031 1 8531600 57194 9423 38154 39020 66750;66751;66752 66751 1552 -0.0170095261988763 SAAMVFSAL 9 Oxidation (M) _SAAM(Oxidation (M))VFSAL_ SAAM(1)VFSAL SAAM(67)VFSAL 0 0 1 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7281799316406 2 456.728403 911.442254 0.021441 9.7929E-06 -1.0234 -0.00046743 -1.002 -0.00045764 456.7281000891791 66.296 0.33868 65.813 65.686 66.025 -0.48323 41 18 3 0 0 0 0.016184 1 36233 36233 67.344 31.3 1 10168000 57195 9423 38154 39020 66753 66753 1552 -0.0170095261988763 SAAMVFSAL 9 Oxidation (M) _SAAM(Oxidation (M))VFSAL_ SAAM(1)VFSAL SAAM(82)VFSAL 0 0 1 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.4512329101562 1 912.44953 911.442254 0.63132 0.00057604 -0.18706 -0.00017068 0.44426 0.00040536 912.4490345597549 71.95 0.29404 65.774 65.604 65.898 -6.1757 29 16 2 0 0 0 0.0095811 1 47014 47014 81.613 33.267 1 27520000 57196 9423 38154 39020 66754 66754 1552 -0.0170095261988763 SAAMVFSAL 9 Oxidation (M) _SAAM(Oxidation (M))VFSAL_ SAAM(1)VFSAL SAAM(42)VFSAL 0 0 1 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7281188964844 2 456.728403 911.442254 1.1127 0.00050822 -0.61906 -0.00028274 0.49369 0.00022548 456.72838088137485 71.957 0.32451 65.781 65.573 65.898 -6.1757 45 18 3 0 0 0 0.06187 1 47021 47021 42.095 18.946 1 58788000 57197 9423 38154 39020 66755 66755 1552 -0.0170095261988763 SAAMVFSAL 9 Oxidation (M) _SAAM(Oxidation (M))VFSAL_ 0 0 1 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 456.728403 911.442254 1.1315 0.00051677 -1.6897 -0.00077174 -0.55827 -0.00025498 456.72751430088255 65.84 0.1228 65.85 65.768 65.891 0.0095596 0.034915 -0.00061529 NaN 67.344 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1250000 57198 9423 38154 39020 1552 -0.0170095261988763 SAAMVFSAL 9 Unmodified _SAAMVFSAL_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.455810546875 1 896.454616 895.447339 -1.4612 -0.0013099 2.3054 0.0020667 0.84422 0.00075681 896.4565121042397 77.713 0.22955 77.23 77.082 77.312 -0.4826 14 9 2 0 0 0 0.32871 1 42532 42532 15.847 3.3156 1 705570 57199 9423 38154 39021 66756 66756 -0.004566487572674305 SAAMVFSAL 9 Unmodified _SAAMVFSAL_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.4562377929688 1 896.454616 895.447339 -0.049804 -4.4647E-05 0.41215 0.00036948 0.36235 0.00032483 896.4550247394818 84.565 0.56251 78.389 78.172 78.735 -6.1757 49 32 2 0 0 0 0.0090851 3 55691 55556;55691;55827 85.357 30.758 1 29390000 57200 9423 38154 39021 66757;66758;66759 66758 -0.004566487572674305 SAAMVFSAL 9 Unmodified _SAAMVFSAL_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MSMS AL20221201_MKP_PDAC_01 4 448.7319641113281 2 448.730946 895.447339 NaN NaN NaN NaN NaN NaN NaN 84.761 1 78.585 78.085 79.085 -6.1757 0 0 0 0.071041 1 55785 55785 50.855 16.668 1 57201 9423 38154 39021 66760 66760 -0.004566487572674305 SAANIQPIF 9 Unmodified _SAANIQPIF_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5149536132812 1 960.514908 959.507631 0.21347 0.00020504 0.2594 0.00024916 0.47287 0.0004542 960.5148565098541 65.201 0.28104 64.716 64.533 64.814 -0.48428 16 12 2 0 0 0 0.03568 1 35535 35535 52.268 8.4101 1 1321400 57202 5172 38155 39022 66761 66761 0.02625784897475114 SAANIQPIF 9 Unmodified _SAANIQPIF_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7614440917969 2 480.761092 959.507631 0.42397 0.00020383 -0.74378 -0.00035758 -0.31981 -0.00015375 480.7608570535149 65.143 0.36582 64.659 64.448 64.814 -0.48428 26 16 2 0 0 0 0.022193 1 35541 35541 61.357 23.206 1 1421700 57203 5172 38155 39022 66762 66762 0.02625784897475114 SAANNVYQY 9 Unmodified _SAANNVYQY_ 0 0 0 ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7476806640625 2 515.235439 1028.45632 -0.79036 -0.00040722 -1.8196 -0.0009375 -2.6099 -0.0013447 515.234298525067 32.802 0.23049 32.802 32.677 32.908 0 19 11 2 0 0 0 0.10661 1 17188 17188 37.974 23.392 1 2887300 57204 2456 38156 39023 66763 66763 -0.0567658386723906 SAAPFAQRY 9 Unmodified _SAAPFAQRY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7567138671875 2 505.756341 1009.49813 -0.66354 -0.00033559 1.5935 0.00080593 0.92997 0.00047034 505.7571385310704 34.053 0.2028 33.862 33.77 33.972 -0.19132 13 7 2 0 0 0 0.12424 1 17776 17776 30.637 12.49 1 1647800 57205 1983 38157 39024 66764 66764 -0.0062398338806133324 SAAPFAQRY 9 Unmodified _SAAPFAQRY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7547302246094 2 505.756341 1009.49813 1.0536 0.00053288 -1.5134 -0.00076542 -0.45979 -0.00023254 505.7553666082932 37.957 0.21847 33.588 33.437 33.655 -4.3689 21 12 2 0 0 0 0.022193 1 22319 22319 61.357 32.276 1 6005900 57206 1983 38157 39024 66765 66765 -0.0062398338806133324 SAAPFAQRY 9 Unmodified _SAAPFAQRY_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.756341 1009.49813 -0.21871 -0.00011061 0.56129 0.00028388 0.34258 0.00017326 505.7559308577499 33.91 0.20485 33.91 33.804 34.009 0 0.12344 -0.00022454 NaN 61.357 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1149400 57207 1983 38157 39024 -0.0062398338806133324 SAAPLLIAF 9 Unmodified _SAAPLLIAF_ 0 0 0 nc|ENSG00000101307|Q5TFQ8|SIRPB1 nc|ENSG00000101307|Q5TFQ8|SIRPB1 nc|ENSG00000101307|Q5TFQ8|SIRPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7703857421875 2 451.770929 901.527304 1.6462 0.00074369 -3.0836 -0.0013931 -1.4375 -0.00064941 451.77068669537755 98.202 0.19412 92.026 91.968 92.163 -6.1757 12 12 2 0 0 0 0.052168 1 65128 65128 44.407 6.2558 1 8928900 57208 16091 38158 39025 66766 66766 0.07260160908231228 SAAPLQPVL 9 Unmodified _SAAPLQPVL_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 895.5244750976562 1 895.524744 894.517468 0.36249 0.00032462 0.16295 0.00014593 0.52544 0.00047055 895.5253846609838 60.722 0.23013 60.722 60.581 60.811 0 14 9 2 0 0 0 0.047196 1 33869 33869 46.021 1.6139 1 511200 57209 4544 38159 39026 66767 66767 0.06598972902861533 SAAPLQPVL 9 Unmodified _SAAPLQPVL_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2681274414062 2 448.26601 894.517468 0.6773 0.00030361 1.9074 0.000855 2.5847 0.0011586 448.267098002615 60.707 0.21319 60.707 60.625 60.838 0 14 8 2 0 0 0 0.1773 1 33875 33875 25.399 8.457 1 631580 57210 4544 38159 39026 66768 66768 0.06598972902861533 SAAPPLPSL 9 Unmodified _SAAPPLPSL_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7449035644531 2 426.744911 851.475269 NaN NaN NaN NaN NaN NaN NaN 64.682 1 64.682 64.182 65.182 0 0 0 0 0.50124 1 36075 36075 15.847 0 1 57211 3660 38160 39027 66769 66769 0.04358997494466621 SAAPPLPSL 9 Unmodified _SAAPPLPSL_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 852.4832153320312 1 852.482545 851.475269 -0.23942 -0.00020411 1.889 0.0016104 1.6496 0.0014063 852.4837181813558 65.208 0.27994 64.723 64.555 64.835 -0.48428 14 12 2 0 0 0 0.05447 1 35594 35594 43.858 11.553 1 918240 57212 3660 38160 39027 66770 66770 0.04358997494466621 SAAPPLPSL 9 Unmodified _SAAPPLPSL_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7453002929688 2 426.744911 851.475269 NaN NaN NaN NaN NaN NaN NaN 65.173 1 64.689 64.189 65.189 -0.48428 0 0 0 0.098163 1 35564 35564 43.858 16.975 1 57213 3660 38160 39027 66771 66771 0.04358997494466621 SAAPRSDACLL 11 Unmodified _SAAPRSDACLL_ 0 0 0 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 ENSG00000108239|ENST00000225235|TBC1D12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5217895507812 3 368.521974 1102.54409 -0.044851 -1.6528E-05 1.56 0.0005749 1.5152 0.00055838 368.52249971400863 37.787 0.23036 37.516 37.35 37.58 -0.27133 17 10 2 0 0 0 0.66175 1 19852 19852 7.846 3.9697 1 5027800 57214 2552 38161 39028 66772 66772 -0.0030770626813136914 SAAQPGVAF 9 Unmodified _SAAQPGVAF_ 0 0 0 nc|ENSG00000108061|Q9UQ13-2|SHOC2;ENSG00000108061|ENST00000369452|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 nc|ENSG00000108061|Q9UQ13-2|SHOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2193298339844 2 424.21906 846.423567 1.3228 0.00056117 0.33538 0.00014228 1.6582 0.00070345 424.2192822493205 50.505 0.52843 44.966 44.607 45.136 -5.5391 52 33 2 0 0 0 0.018301 2 31807 31634;31807 65.235 7.8141 1 22724000 57215 2544 38162 39029 66773;66774 66774 -0.005787461994259502 SAARDDAVF 9 Unmodified _SAARDDAVF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2301025390625 2 476.230156 950.445759 NaN NaN NaN NaN NaN NaN NaN 30.555 1 30.555 30.055 31.055 0 0 0 0 0.81228 1 15880 15880 5.7319 0 1 57216 2879 38163 39030 66775 66775 -0.03144566521677916 SAASEQHVF 9 Unmodified _SAASEQHVF_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.230224609375 2 488.230156 974.445759 -0.44783 -0.00021865 0.92155 0.00044993 0.47372 0.00023128 488.2306265597327 26.944 0.38017 26.944 26.74 27.12 0 51 17 4 0 0 0 0.009483 2 13901 13801;13901 81.89 38.032 1 25404000 57217 5271 38164 39031 66776;66777 66777 -0.04248566521664543 SAASEQHVF 9 Unmodified _SAASEQHVF_ 0 0 0 ENSG00000140829|ENST00000268482|DHX38;nc|ENSG00000140829|Q92620-2|DHX38 ENSG00000140829|ENST00000268482|DHX38 ENSG00000140829|ENST00000268482|DHX38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2305908203125 2 488.230156 974.445759 0.53747 0.00026241 -0.15889 -7.7577E-05 0.37857 0.00018483 488.2301366894763 29.99 0.39047 26.541 26.356 26.747 -3.4487 41 18 3 0 0 0 0.0059585 2 16860 16860;16972 114.65 55.97 1 85888000 57218 5271 38164 39031 66778;66779 66778 -0.04248566521664543 SAASTAIYVY 10 Unmodified _SAASTAIYVY_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.26318359375 2 523.263665 1044.51278 0.48085 0.00025161 -1.7056 -0.00089247 -1.2247 -0.00064086 523.262534530838 52.636 0.24651 52.636 52.552 52.798 0 15 10 2 0 0 0 0.2178 1 29154 29154 32.305 17.057 1 1773300 57219 1205 38165 39032 66780 66780 -0.0076995603058094275 SAASTSVTF 9 Unmodified _SAASTSVTF_ 0 0 0 ENSG00000119401|ENST00000450136|TRIM32 ENSG00000119401|ENST00000450136|TRIM32 ENSG00000119401|ENST00000450136|TRIM32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.4235229492188 1 870.420339 869.413062 1.1769 0.0010244 -0.26352 -0.00022937 0.91336 0.00079501 870.4208082107401 47.363 0.30147 42.282 42.179 42.48 -5.0805 31 17 2 0 0 0 0.019303 2 29492 29369;29492 64.236 31.931 1 8119400 57220 3431 38166 39033 66781;66782 66782 -0.02686773644529694 SAAVHSFAF 9 Unmodified _SAAVHSFAF_ 0 0 0 ENST00000488915.1_1_7:72984839-72985682:-|nuORF;ENSG00000106638|ENST00000305632|TBL2 ENST00000488915.1_1_7:72984839-72985682:-|nuORF ENST00000488915.1_1_7:72984839-72985682:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7322998046875 2 468.732335 935.450116 0.76933 0.00036061 -0.15788 -7.4005E-05 0.61145 0.0002866 468.7322389120444 49.603 0.23567 49.211 49.138 49.374 -0.3923 28 11 3 0 0 0 0.0082485 1 26679 26679 96.285 47.939 1 4072700 57221 2448 38167 39034 66783 66783 -0.020190573080981267 SAAVHSFAF 9 Unmodified _SAAVHSFAF_ 0 0 0 ENST00000488915.1_1_7:72984839-72985682:-|nuORF;ENSG00000106638|ENST00000305632|TBL2 ENST00000488915.1_1_7:72984839-72985682:-|nuORF ENST00000488915.1_1_7:72984839-72985682:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 468.7332458496094 2 468.732335 935.450116 NaN NaN NaN NaN NaN NaN NaN 54.288 1 48.422 47.922 48.922 -5.8653 0 0 0 0.020219 1 34410 34410 78.149 38.192 1 57222 2448 38167 39034 66784 66784 -0.020190573080981267 SAAWRRFEVI 10 Unmodified _SAAWRRFEVI_ 0 0 0 ENST00000470046.1_1_22:50881704-50882673:+|nuORF ENST00000470046.1_1_22:50881704-50882673:+|nuORF ENST00000470046.1_1_22:50881704-50882673:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2277221679688 3 412.22789 1233.66184 -0.075693 -3.1203E-05 0.65421 0.00026968 0.57852 0.00023848 412.2286951780796 19.775 0.14811 19.782 19.692 19.84 0.0078487 9 6 2 0 0 0 0.67755 1 10077 10077 5.4027 4.293 1 604100 57223 13848 38168 39035 66785 66785 0.054356143828499626 SACDCCHWGHP 11 Unmodified _SACDCCHWGHP_ 0 0 0 ENST00000354921.7_1_1:177913774-177917075:-|nuORF;ENST00000464631.6_2_1:177915527-177921049:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.447998046875 2 608.21006 1214.40557 NaN NaN NaN NaN NaN NaN NaN 81.622 1 81.622 81.122 82.122 0 0 0 0 0.9435 1 45296 45296 0 0 1 57224 12069 38169 39036 66786 66786 -0.19305895779734783 SACDCCHWGHP 11 Unmodified _SACDCCHWGHP_ 0 0 0 ENST00000354921.7_1_1:177913774-177917075:-|nuORF;ENST00000464631.6_2_1:177915527-177921049:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2479858398438 2 608.21006 1214.40557 NaN NaN NaN NaN NaN NaN NaN 96.236 1 96.236 95.736 96.736 0 0 0 0 0.9435 1 53183 53183 0 0 1 57225 12069 38169 39036 66787 66787 -0.19305895779734783 SACDCCHWGHP 11 Unmodified _SACDCCHWGHP_ 0 0 0 ENST00000354921.7_1_1:177913774-177917075:-|nuORF;ENST00000464631.6_2_1:177915527-177921049:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2076416015625 2 608.21006 1214.40557 NaN NaN NaN NaN NaN NaN NaN 9.2944 1 9.2029 8.7029 9.7029 -0.09156 0 0 0 0.9435 1 4550 4550 0 0 1 57226 12069 38169 39036 66788 66788 -0.19305895779734783 SACDCCHWGHP 11 Unmodified _SACDCCHWGHP_ 0 0 0 ENST00000354921.7_1_1:177913774-177917075:-|nuORF;ENST00000464631.6_2_1:177915527-177921049:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF ENST00000354921.7_1_1:177913774-177917075:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2096557617188 2 608.21006 1214.40557 NaN NaN NaN NaN NaN NaN NaN 12.754 1 12.689 12.189 13.189 -0.064889 0 0 0 0.9435 1 6195 6195 0 0 1 57227 12069 38169 39036 66789 66789 -0.19305895779734783 SACGHTAVL 9 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))GHTAVL_ SAC(1)GHTAVL SAC(67)GHTAVL 0 1 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2208251953125 2 458.221277 914.428001 0.59249 0.00027149 -1.1521 -0.00052791 -0.55959 -0.00025642 458.22080729886096 26.759 0.4135 23.722 23.553 23.966 -3.0365 34 21 2 0 0 0 0.016184 1 14741 14741 67.344 25.249 1 14746000 57228 5176 38170 39037 66790 66790 530 -0.03263605048164209 SACHVSNTL 9 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))HVSNTL_ SAC(1)HVSNTL SAC(65)HVSNTL 0 1 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7295532226562 2 494.729466 987.444379 0.19778 9.7845E-05 0.75466 0.00037335 0.95244 0.0004712 494.7297367956073 23.545 0.22315 20.717 20.549 20.772 -2.8273 17 12 2 0 0 0 0.018301 1 12735 12735 65.235 35.01 1 1992900 57229 4244 38171 39038 66791 66791 423 -0.04984523882058056 SACPFSSKF 9 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))PFSSKF_ SAC(1)PFSSKF SAC(70)PFSSKF 0 1 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MSMS AL20221201_MKP_PDAC_01 4 515.7373657226562 2 515.73676 1029.45897 NaN NaN NaN NaN NaN NaN NaN 46.619 1 41.539 41.039 42.039 -5.0805 0 0 0 0.026638 1 28839 28839 70.332 34.205 1 57230 1915 38172 39039 66792 66792 188 -0.05458451733943548 SACQVGQVF 9 Carbamidomethyl (C) _SAC(Carbamidomethyl (C))QVGQVF_ SAC(1)QVGQVF SAC(72)QVGQVF 0 1 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2333984375 2 498.234384 994.454216 0.91819 0.00045748 -0.11088 -5.5246E-05 0.80731 0.00040223 498.2340726188373 53.416 0.39624 47.612 47.453 47.849 -5.8042 42 25 2 0 0 0 0.013041 1 33743 33743 71.922 46.523 1 36240000 57231 1780 38173 39040 66793 66793 172 -0.043233358766769925 SACSGLNK 8 Unmodified _SACSGLNK_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1884155273438 2 390.189445 778.364338 NaN NaN NaN NaN NaN NaN NaN 19.645 1 19.674 19.174 20.174 0.028357 0 0 0 0.97444 1 9917 9917 2.3027 1.5091 1 57232 9484 38174 39041 66794 66794 -0.033709654852714266 SACSSWATSI 10 Unmodified _SACSSWATSI_ 0 0 0 REV__ENST00000255381.2_1_17:10361024-10363530:-|nuORF REV__ENST00000255381.2_1_17:10361024-10363530:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7240905761719 2 506.723849 1011.43315 0.69885 0.00035413 -0.9544 -0.00048362 -0.25555 -0.00012949 506.72303628442546 35.249 0.38814 31.154 30.898 31.286 -4.0951 47 22 3 0 0 0 0.44373 1 20376 20376 19.257 0 1 20645000 + 57233 24915 38175 39042 66795 66795 -0.07211345976213579 SADDTYLQL 9 Unmodified _SADDTYLQL_ 0 0 0 nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-2|PLEKHA7;ENSG00000166689|ENST00000531066|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23|PLEKHA7;nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23|PLEKHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.244873046875 2 513.242929 1024.47131 0.65166 0.00033446 0.81593 0.00041877 1.4676 0.00075323 513.2426882509409 60.434 0.55181 60.434 60.094 60.646 0 45 24 3 0 0 0 0.042911 2 33666 33666;33769 48.346 22.005 1 5217600 57234 7520;14803 38176 39043 66796;66797 66796 -0.03995136789899334 SADGIVRIY 9 Unmodified _SADGIVRIY_ 0 0 0 nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L nc|ENSG00000085415|Q96EE3|SEH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2706909179688 2 497.271824 992.529095 0.44136 0.00021948 -1.6868 -0.00083879 -1.2454 -0.00061932 497.27062782088984 47.31 0.27855 47.31 47.149 47.427 0 17 12 2 0 0 0 0.047788 1 25903 25903 45.7 21.679 1 1706000 57235 1409 38177 39044 66798 66798 0.03253169926188093 SADGQIYIY 9 Unmodified _SADGQIYIY_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10086146-10093179:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2484741210938 2 515.248015 1028.48148 0.67863 0.00034966 -0.26778 -0.00013798 0.41084 0.00021169 515.2478882122862 53.954 0.48446 53.954 53.627 54.111 0 52 22 3 0 0 0 0.039985 2 29878 29878;29991 49.933 17.628 1 9888500 57236 1052 38178 39045 66799;66800 66799 -0.03162529064661612 SADGQIYIY 9 Unmodified _SADGQIYIY_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10086146-10093179:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2490844726562 2 515.248015 1028.48148 0.85567 0.00044088 0.017896 9.221E-06 0.87357 0.0004501 515.7492292346872 61.782 0.35987 55.607 55.464 55.823 -6.1757 24 18 2 0 0 0 0.010818 1 39799 39799 78.149 16.792 1 21389000 57237 1052 38178 39045 66801 66801 -0.03162529064661612 SADILMLVL 9 Unmodified _SADILMLVL_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.5582275390625 1 974.559081 973.551804 0.14738 0.00014363 -0.91809 -0.00089473 -0.77071 -0.0007511 974.5587272205197 97.104 0.17546 97.104 97.018 97.194 0 12 7 2 0 0 0 0.2143 1 53653 53653 21.747 3.6117 1 835710 + 57238 22046 38179 39046 66802 66802 0.06397052999443531 SADILMLVL 9 Unmodified _SADILMLVL_ 0 0 0 REV__ENSG00000165733|ENST00000374518|BMS1 REV__ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.6171264648438 1 974.559081 973.551804 1.3872 0.001352 -1.2656 -0.0012334 0.1216 0.00011851 974.558118239743 100.87 0.2136 94.694 94.584 94.798 -6.1757 42 13 5 0 0 0 0.30562 1 67539 67539 16.942 1.1741 1 1095400000 + 57239 22046 38179 39046 66803 66803 0.06397052999443531 SADKGGFLY 9 Unmodified _SADKGGFLY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2361755371094 2 479.23745 956.460347 -0.277 -0.00013275 -1.5647 -0.00074985 -1.8417 -0.0008826 479.2366616802796 40.961 0.15154 40.961 40.93 41.082 0 12 9 2 0 0 0 0.062454 1 22057 22057 41.956 16.556 1 6331500 57240 410 38180 39047 66804 66804 -0.01962494373537993 SADPGNLKY 9 Unmodified _SADPGNLKY_ 0 0 0 ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7399597167969 2 482.740357 963.46616 NaN NaN NaN NaN NaN NaN NaN 28.545 1 28.545 28.045 29.045 0 0 0 0 0.32177 1 14751 14751 24.021 9.1823 1 57241 14760 38181 39048 66805 66805 -0.017033958618526412 SADPGNLKY 9 Unmodified _SADPGNLKY_ 0 0 0 ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENST00000522841.6_1_16:21481075-21531198:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 483.2154846191406 2 482.740357 963.46616 1.1632 0.00056152 -1.6457 -0.00079446 -0.48254 -0.00023294 482.74011339639435 32.27 0.12792 28.414 28.366 28.494 -3.8562 11 7 2 0 0 0 0.16895 1 18362 18362 24.021 9.1823 1 5382200 57242 14760 38181 39048 66806 66806 -0.017033958618526412 SADPGVFVL 9 Unmodified _SADPGVFVL_ 0 0 0 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 904.4781494140625 1 904.47746 903.470183 0.053841 4.8698E-05 -0.19689 -0.00017808 -0.14305 -0.00012938 904.4773871720886 76.059 0.31216 76.059 75.936 76.248 0 25 13 3 0 0 0 0.038285 2 42341 42283;42341 50.855 23.971 1 2066700 57243 16259 38182 39049 66807;66808 66808 0.014586936318664812 SADPGVFVL 9 Unmodified _SADPGVFVL_ 0 0 0 nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 nc|ENSG00000148339|Q6KCM7-4|SLC25A25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 904.4782104492188 1 904.47746 903.470183 0.83474 0.000755 -0.27443 -0.00024821 0.56031 0.00050679 904.4771073807777 83.318 0.42458 77.142 76.863 77.287 -6.1757 34 22 2 0 0 0 0.016184 2 54826 54699;54826 67.344 24.279 1 7553400 57244 16259 38182 39049 66809;66810 66810 0.014586936318664812 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3;ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENSG00000181938|ENST00000318129|GINS3 ENSG00000181938|ENST00000318129|GINS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.457275390625 1 929.457453 928.450176 0.46258 0.00042995 -0.19775 -0.0001838 0.26482 0.00024614 929.45723082442 50.224 0.31561 50.224 50.053 50.369 0 34 14 3 0 0 0 0.012668 2 27722 27618;27722 72.968 19.135 1 7498800 57245 9007 38183 39050 66811;66812 66812 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3;ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENSG00000181938|ENST00000318129|GINS3 ENSG00000181938|ENST00000318129|GINS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2326965332031 2 465.232364 928.450176 0.6496 0.00030221 -0.53773 -0.00025017 0.11187 5.2045E-05 465.23197183716877 50.215 0.29694 50.215 50.053 50.35 0 29 13 3 0 0 0 0.028475 1 27651 27651 56.177 23.872 1 5035300 57246 9007 38183 39050 66813 66813 -0.016911020987663505 SADPNVVDL 9 Unmodified _SADPNVVDL_ 0 0 0 ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3;ENST00000567143.1_1_16:58436992-58437325:+|nuORF ENSG00000181938|ENST00000318129|GINS3 ENSG00000181938|ENST00000318129|GINS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.4583740234375 1 929.457453 928.450176 0.41652 0.00038714 0.13684 0.00012718 0.55336 0.00051433 929.4573908294573 58.109 0.36977 52.081 51.957 52.327 -6.0275 29 19 2 0 0 0 0.0089732 2 37289 37163;37289 86.332 14.41 1 19377000 57247 9007 38183 39050 66814;66815 66815 -0.016911020987663505 SADRTVIDY 9 Unmodified _SADRTVIDY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2557373046875 2 520.256371 1038.49819 -0.32782 -0.00017055 0.2386 0.00012413 -0.089227 -4.6421E-05 520.2565145289043 34.025 0.44403 34.025 33.864 34.308 0 51 22 5 0 0 0 0.012668 2 17845 17845;17959 72.968 33.018 1 50959000 57248 9390 38184 39051 66816;66817 66816 -0.019520281786981286 SADRTVIDY 9 Unmodified _SADRTVIDY_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2569580078125 2 520.256371 1038.49819 0.46576 0.00024232 0.54636 0.00028425 1.0121 0.00052656 520.2565525215024 38.739 0.49468 34.289 34.028 34.523 -4.4509 76 31 3 0 0 0 0.0074582 3 22762 22762;22891;23017 110.55 41.448 1 119690000 57249 9390 38184 39051 66818;66819;66820 66818 -0.019520281786981286 SADRTVIVW 9 Unmodified _SADRTVIVW_ 0 0 0 ENST00000507452.5_1_5:76747118-76788033:-|nuORF;nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41;ENST00000507239.5_1_5:76754877-76788045:-|nuORF ENST00000507452.5_1_5:76747118-76788033:-|nuORF ENST00000507452.5_1_5:76747118-76788033:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7844848632812 2 523.785099 1045.55564 NaN NaN NaN NaN NaN NaN NaN 56.39 1 55.904 55.404 56.404 -0.48554 0 0 0 0.61214 1 30617 30617 12.241 0 1 57250 7169 38185 39052 66821 66821 0.03468858817518594 SADTHGTDAL 10 Unmodified _SADTHGTDAL_ 0 0 0 ENST00000531976.1_1_11:1490730-1491405:-|nuORF ENST00000531976.1_1_11:1490730-1491405:-|nuORF ENST00000531976.1_1_11:1490730-1491405:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2223815917969 2 494.222528 986.430503 0.75118 0.00037125 -2.411 -0.0011916 -1.6598 -0.00082031 494.22141370306235 68.155 0.28174 67.673 67.594 67.875 -0.48219 23 12 2 0 0 0 0.67033 1 37321 37321 6.2058 0.44535 1 1067100 57251 14918 38186 39053 66822 66822 -0.06325478109533833 SADTKHYYELE 11 Unmodified _SADTKHYYELE_ 0 0 0 CON__ENSEMBL:ENSBTAP00000023402 CON__ENSEMBL:ENSBTAP00000023402 CON__ENSEMBL:ENSBTAP00000023402 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.5419311523438 3 452.54198 1354.60411 0.44189 0.00019998 0.41043 0.00018573 0.85232 0.00038571 452.5419512381093 50.326 0.42327 50.326 50.053 50.477 0 42 19 3 0 0 0 0.65846 1 27753 27753 4.1166 1.6818 1 4751300 + 57252 144 38187 39054 66823 66823 -0.0590073712389767 SADYHTFFY 9 Unmodified _SADYHTFFY_ 0 0 0 REV__ENSG00000187010|ENST00000328664|RHD;REV__nc|ENSG00000187010|Q02161-4|RHD REV__nc|ENSG00000187010|Q02161-4|RHD MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1673583984375 3 384.166185 1149.47673 1.0494 0.00040315 1.9174 0.0007366 2.9668 0.0011397 384.16677885066275 45.969 0.40541 41.014 40.863 41.269 -4.9549 40 26 2 0 0 0 0.58865 1 28364 28364 1.0715 0 1 11694000 + 57253 23612;29856 38188 39055 66824 66824 -0.09203413207410449 SAEAQRAAARF 11 Unmodified _SAEAQRAAARF_ 0 0 0 ENSG00000130812|ENST00000253109|ANGPTL6 ENSG00000130812|ENST00000253109|ANGPTL6 ENSG00000130812|ENST00000253109|ANGPTL6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.8734741210938 3 393.207266 1176.59997 1.0433 0.00041025 0.18712 7.3577E-05 1.2305 0.00048383 393.20705406678235 30.237 0.37987 26.74 26.612 26.992 -3.497 23 18 2 0 0 0 0.29891 1 17048 17048 9.2438 0.79947 1 14965000 57254 4265 38189 39056 66825 66825 0.018732629636815545 SAECVFRMNQ 10 Unmodified _SAECVFRMNQ_ 0 0 0 ENST00000495983.1_1_9:130672770-130677033:-|nuORF;ENSG00000136840|ENST00000335791|ST6GALNAC4 ENST00000495983.1_1_9:130672770-130677033:-|nuORF ENST00000495983.1_1_9:130672770-130677033:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.7623901367188 2 592.762983 1183.51141 NaN NaN NaN NaN NaN NaN NaN 18.04 1 18.046 17.546 18.546 0.0060463 0 0 0 0.95103 1 9126 9126 5.7319 1.7875 1 57255 4866 38190 39057 66826 66826 -0.0730023666260422 SAEDREAPG 9 Unmodified _SAEDREAPG_ 0 0 0 ENST00000379974.1_1_10:6002458-6019856:-|nuORF;ENST00000525219.6_1_10:6008176-6019856:-|nuORF ENST00000379974.1_1_10:6002458-6019856:-|nuORF ENST00000379974.1_1_10:6002458-6019856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2096252441406 2 466.209421 930.404288 -0.19629 -9.1511E-05 0.99904 0.00046576 0.80275 0.00037425 466.20992370168307 34.146 0.29924 34.146 33.947 34.247 0 26 15 2 0 0 0 0.21643 1 17913 17913 21.537 3.3906 1 13097000 57256 12583 38191 39058 66827 66827 -0.06369747280996307 SAEKSVPL 8 Unmodified _SAEKSVPL_ 0 0 0 ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENST00000469269.1_1_20:36758623-36761344:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7349548339844 2 415.734543 829.454533 NaN NaN NaN NaN NaN NaN NaN 54.158 1 54.158 53.658 54.658 0 0 0 0 0.94061 1 30053 30053 12.532 0.89125 1 57257 13830 38192 39059 66828 66828 0.03298407114800739 SAEKSVPL 8 Unmodified _SAEKSVPL_ 0 0 0 ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENST00000469269.1_1_20:36758623-36761344:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.24267578125 2 415.734543 829.454533 -0.62148 -0.00025837 -0.18325 -7.6182E-05 -0.80473 -0.00033455 415.7343658885943 28.764 0.32013 28.764 28.662 28.982 0 25 15 2 0 0 0 8.7369 1 14973 14973 9.3474 4.1168 1 2736600 57258 13830 38192 39059 66829 66829 0.03298407114800739 SAEPSPTVM 9 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ SAEPSPTVM(1) SAEPSPTVM(96) 0 0 1 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4196166992188 1 934.418624 933.411348 -0.11677 -0.00010911 0.9373 0.00087583 0.82054 0.00076672 934.4200646972879 22.357 0.34576 22.357 22.204 22.55 0 37 16 3 0 0 0 0.0082485 2 11323 11323;11421 96.285 58.311 1 1569700 57259 16069 38193 39060 66830;66831 66830 1790 -0.05802150724764488 SAEPSPTVM 9 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ SAEPSPTVM(1) SAEPSPTVM(42) 0 0 1 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7132263183594 2 467.71295 933.411348 0.050858 2.3787E-05 -0.028529 -1.3343E-05 0.022329 1.0444E-05 467.7129924253802 22.41 0.50863 22.41 22.082 22.59 0 54 24 3 0 0 0 0.06187 1 11367 11367 42.095 15.211 1 3488400 57260 16069 38193 39060 66832 66832 1790 -0.05802150724764488 SAEPSPTVM 9 Oxidation (M) _SAEPSPTVM(Oxidation (M))_ SAEPSPTVM(1) SAEPSPTVM(57) 0 0 1 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7131958007812 2 467.71295 933.411348 0.33873 0.00015843 1.1188 0.00052329 1.4576 0.00068173 467.7136075484516 26.441 0.45191 23.49 23.261 23.713 -2.9511 50 23 3 0 0 0 0.026094 1 14595 14595 57.471 30.588 1 20859000 57261 16069 38193 39060 66833 66833 1790 -0.05802150724764488 SAEPSPTVM 9 Unmodified _SAEPSPTVM_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.4240112304688 1 918.42371 917.416433 1.34 0.0012307 -0.4513 -0.00041448 0.88874 0.00081624 918.4237129783976 41.718 0.4503 37.11 36.91 37.36 -4.6079 78 28 4 0 0 0 0.0014543 2 24998 24998;25126 136.33 68.99 1 18471000 57262 16069 38193 39061 66834;66835 66834 -0.04557846862155657 SAEPSPTVM 9 Unmodified _SAEPSPTVM_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 459.2488708496094 2 459.715493 917.416433 1.5781 0.00072546 -0.42532 -0.00019553 1.1527 0.00052993 459.71558308471083 41.718 0.4503 37.11 36.91 37.36 -4.6079 67 28 3 0 0 0 0.12183 1 25187 25187 34.102 10.954 1 21739000 57263 16069 38193 39061 66836 66836 -0.04557846862155657 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.2822875976562 2 608.282054 1214.54956 0.69048 0.00042001 -0.1164 -7.0805E-05 0.57408 0.0003492 608.2817781056642 81.998 0.53181 81.503 81.287 81.819 -0.4952 51 20 4 0 0 0 0.63089 1 44935 44935 15.847 7.1018 1 2837100 + 57264 19912 38194 39062 66837 66837 -0.049137042046595525 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.2826538085938 2 608.282054 1214.54956 1.0081 0.00061318 0.18222 0.00011084 1.1903 0.00072402 608.2819992756115 88.328 0.48491 82.153 81.889 82.373 -6.1757 36 26 2 0 0 0 0.63089 1 58361 58361 15.847 0 1 14744000 + 57265 19912 38194 39062 66838 66838 -0.049137042046595525 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.28173828125 2 608.282054 1214.54956 0.95043 0.00057813 0.71857 0.00043709 1.669 0.0010152 608.2815918449979 89.484 0.45065 83.308 83.147 83.598 -6.1757 51 24 3 0 0 0 0.55245 1 59184 59184 21.747 10.923 1 11038000 + 57266 19912 38194 39062 66839 66839 -0.049137042046595525 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.28173828125 2 608.282054 1214.54956 1.086 0.00066058 -0.60378 -0.00036727 0.48221 0.00029332 608.2814344274772 97.769 0.82923 91.593 91.062 91.891 -6.1757 114 50 3 0 0 0 0.64183 1 64785 64785 14.838 6.6827 1 45320000 + 57267 19912 38194 39062 66840 66840 -0.049137042046595525 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 608.282054 1214.54956 0.00060675 3.6908E-07 1.0804 0.00065718 1.081 0.00065755 608.2824468474463 81.479 0.3093 81.479 81.304 81.613 0 0.0082802 0.0011172 NaN 15.847 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 975180 + 57268 19912 38194 39062 -0.049137042046595525 SAEPYEPFLY 10 Unmodified _SAEPYEPFLY_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.282054 1214.54956 1.4666 0.00089212 0.67076 0.00040801 2.1374 0.0013001 608.2812391659077 81.369 0.29523 81.429 81.315 81.61 0.059929 -0.040869 0.00061882 NaN 15.847 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1489800 + 57269 19912 38194 39062 -0.049137042046595525 SAETSAPAP 9 Unmodified _SAETSAPAP_ 0 0 0 ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.3898315429688 1 830.389039 829.381762 0.15492 0.00012864 0.14309 0.00011882 0.29801 0.00024746 830.3890929152673 39.197 0.24267 39.197 39.059 39.302 0 18 11 2 0 0 0 0.010877 1 20971 20971 77.984 13.748 1 2308900 57270 7850 38195 39063 66841 66841 -0.03975346678623737 SAFASNPEF 9 Unmodified _SAFASNPEF_ 0 0 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.43115234375 1 969.431238 968.423961 0.53246 0.00051618 0.7177 0.00069576 1.2502 0.0012119 969.4314324501395 49.79 0.18747 49.79 49.695 49.883 0 13 8 2 0 0 0 0.095405 1 27441 27441 34.102 21.571 1 1176300 57271 4898 38196 39064 66842 66842 -0.061513712702321754 SAFCYLAL 8 Unmodified _SAFCYLAL_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2201538085938 2 444.220214 886.425876 -0.07222 -3.2082E-05 -1.3415 -0.00059592 -1.4137 -0.00062801 444.2211192602373 22.963 0.51147 22.963 22.876 23.387 0 41 26 2 0 0 0 0.80143 1 11788 11788 5.7604 0 1 762890 + 57272 19846 38197 39065 66843 66843 -0.021880337860011423 SAFDEAMSY 9 Oxidation (M) _SAFDEAM(Oxidation (M))SY_ SAFDEAM(1)SY SAFDEAM(64)SY 0 0 1 ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556495.5_1_14:71059591-71067354:-|nuORF ENST00000556495.5_1_14:71059591-71067354:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7001953125 2 518.70004 1035.38553 0.54141 0.00028083 -0.77885 -0.00040399 -0.23744 -0.00012316 518.6996824608874 38.318 0.49793 38.318 38.184 38.682 0 84 35 3 0 0 0 0.019303 1 20542 20542 64.236 35.749 1 39027000 57273 4548 38198 39066 66844 66844 827 -0.13075044967058602 SAFDEAMSY 9 Oxidation (M) _SAFDEAM(Oxidation (M))SY_ SAFDEAM(1)SY SAFDEAM(74)SY 0 0 1 ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556495.5_1_14:71059591-71067354:-|nuORF ENST00000556495.5_1_14:71059591-71067354:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7010498046875 2 518.70004 1035.38553 0.56187 0.00029144 0.82228 0.00042652 1.3842 0.00071796 518.700613542767 45.489 0.55026 40.534 40.239 40.789 -4.9549 68 37 2 0 0 0 0.012148 1 27864 27864 74.423 56.288 1 24125000 57274 4548 38198 39066 66845 66845 827 -0.13075044967058602 SAFDEAMSY 9 Unmodified _SAFDEAMSY_ 0 0 0 ENST00000556495.5_1_14:71059591-71067354:-|nuORF;nc|ENSG00000133997|O75586-3|MED6;ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6 ENST00000556495.5_1_14:71059591-71067354:-|nuORF ENST00000556495.5_1_14:71059591-71067354:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7027282714844 2 510.702583 1019.39061 0.78883 0.00040286 -0.47998 -0.00024513 0.30885 0.00015773 510.70262036972804 60.37 0.42693 54.255 54.018 54.445 -6.1147 50 21 3 0 0 0 0.026094 2 38877 38747;38877 57.471 27.247 1 53285000 57275 4548 38198 39067 66846;66847 66847 -0.11830741104449771 SAFDIKCLF 9 Carbamidomethyl (C) _SAFDIKC(Carbamidomethyl (C))LF_ SAFDIKC(1)LF SAFDIKC(77)LF 0 1 0 ENST00000548511.5_1_12:88439351-88442196:+|nuORF;ENST00000552121.5_1_12:88429328-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF ENST00000548511.5_1_12:88439351-88442196:+|nuORF ENST00000548511.5_1_12:88439351-88442196:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7769165039062 2 550.775885 1099.53722 1.1623 0.00064017 1.486 0.00081846 2.6483 0.0014586 550.7757077063645 97.074 0.25111 90.898 90.741 90.992 -6.1757 19 14 2 0 0 0 0.011291 1 64324 64324 76.825 44.039 1 13761000 57276 4526 38199 39068 66848 66848 467 -0.008570191487251577 SAFEATQYF 9 Unmodified _SAFEATQYF_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.1668701171875 2 532.24019 1062.46583 0.92569 0.00049269 -2.3082 -0.0012285 -1.3825 -0.00073582 532.2391795209737 51.223 0.16932 51.223 51.132 51.302 0 12 7 2 0 0 0 0.41742 1 28223 28223 11.64 1.4569 1 1572700 57277 2647 38200 39069 66849 66849 -0.06290815581701281 SAFEDGLRHPF 11 Unmodified _SAFEDGLRHPF_ 0 0 0 nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;nc|ENSG00000160710|P55265-5|ADAR;ENST00000530954.1_1_1:154558222-154560745:-|nuORF nc|ENSG00000160710|P55265-3|ADAR nc|ENSG00000160710|P55265-3|ADAR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.306640625 2 638.309469 1274.60439 NaN NaN NaN NaN NaN NaN NaN 66.826 1 66.826 66.326 67.326 0 0 0 0 0.93224 1 37271 37271 5.7319 1.7875 1 57278 6746 38201 39070 66850 66850 -0.021932726133854885 SAFELEFKDF 10 Unmodified _SAFELEFKDF_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.7952880859375 2 616.795329 1231.5761 0.61891 0.00038174 2.0592 0.0012701 2.6781 0.0016518 616.796668735379 85.698 0.33566 85.196 85.086 85.422 -0.5015 31 15 3 0 0 0 0.42068 1 46909 46909 20.454 7.4112 1 1315600 57279 2505 38202 39071 66851 66851 -0.03042015313326374 SAFELQTIL 9 Unmodified _SAFELQTIL_ 0 0 0 ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;TP53BP2-CAPN2|1|fusion;TP53BP2-CAPN2|2|fusion ENSG00000162909|ENST00000295006|CAPN2;TP53BP2-CAPN2|1|fusion TP53BP2-CAPN2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2819213867188 2 511.281857 1020.54916 0.29925 0.000153 0.42579 0.0002177 0.72504 0.0003707 511.28209568938365 88.693 0.21948 88.693 88.621 88.84 0 19 11 2 0 0 0 0.41742 1 49096 49096 11.64 3.7301 1 625540 57280 30197;6928 38203 39072 66852 66852 0.03970920866152028 SAFELQTIL 9 Unmodified _SAFELQTIL_ 0 0 0 ENSG00000162909|ENST00000295006|CAPN2;ENST00000474026.5_1_1:223946905-223957668:+|nuORF;ENST00000487223.5_1_1:223946905-223962556:+|nuORF;nc|ENSG00000162909|P17655-2|CAPN2;TP53BP2-CAPN2|1|fusion;TP53BP2-CAPN2|2|fusion ENSG00000162909|ENST00000295006|CAPN2;TP53BP2-CAPN2|1|fusion TP53BP2-CAPN2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2818298339844 2 511.281857 1020.54916 0.2789 0.0001426 -0.37846 -0.0001935 -0.099552 -5.0899E-05 511.2817764719304 89.249 0.46164 88.745 88.496 88.957 -0.50423 52 19 4 0 0 0 0.042911 2 48835 48742;48835 48.346 19.859 1 3301400 57281 30197;6928 38203 39072 66853;66854 66854 0.03970920866152028 SAFGLPIVF 9 Unmodified _SAFGLPIVF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 951.8138427734375 1 950.534581 949.527304 0.056326 5.354E-05 0.20917 0.00019883 0.2655 0.00025237 950.5342136255564 101.09 0.083649 101.05 101 101.09 -0.04216 4 2 2 0 0 0 0.038285 2 56165 56165;56175 50.855 26.181 1 19205000 57282 2220 38204 39073 66855;66856 66855 0.05052160908223868 SAFGLPIVF 9 Unmodified _SAFGLPIVF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.5372314453125 1 950.534581 949.527304 0.38672 0.00036759 0.8866 0.00084275 1.2733 0.0012103 950.5354717172997 101.69 0.10162 95.513 95.443 95.545 -6.1757 12 4 4 0 0 0 0.0012811 1 68236 68236 137.59 74.022 1 58887000 57283 2220 38204 39073 66857 66857 0.05052160908223868 SAFGLPIVF 9 Unmodified _SAFGLPIVF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7716369628906 2 475.770929 949.527304 0.73398 0.0003492 0.49268 0.0002344 1.2267 0.00058361 475.77111321783354 101.69 0.10162 95.513 95.443 95.545 -6.1757 10 4 3 0 0 0 0.038285 1 68255 68255 50.855 33.768 1 36446000 57284 2220 38204 39073 66858 66858 0.05052160908223868 SAFGLPIVF 9 Unmodified _SAFGLPIVF_ 0 0 0 ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 ENSG00000104660|ENST00000321250|LEPROTL1 MSMS AL20221201_MKP_PDAC_01 4 475.7695617675781 2 475.770929 949.527304 NaN NaN NaN NaN NaN NaN NaN 47.611 1 42.377 41.877 42.877 -5.2339 0 0 0 0.071041 1 29564 29564 50.855 0.92203 1 57285 2220 38204 39073 66859 66859 0.05052160908223868 SAFGRALRY 9 Unmodified _SAFGRALRY_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7852172851562 2 520.785433 1039.55631 0.08024 4.1788E-05 -0.65758 -0.00034246 -0.57734 -0.00030067 520.7849364393039 33.876 0.2198 33.905 33.837 34.057 0.028934 15 9 2 0 0 0 0.25681 1 17853 17853 19.257 5.7491 1 1436800 57286 4132 38205 39074 66860 66860 0.03811698257209173 SAFGRALRY 9 Unmodified _SAFGRALRY_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 520.785433 1039.55631 1.155 0.00060153 -2.2874 -0.0011912 -1.1323 -0.0005897 520.7845103427308 38.034 0.24564 33.665 33.487 33.733 -4.3689 -0.12026 -0.0015172 NaN 19.257 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 8879500 57287 4132 38205 39074 0.03811698257209173 SAFINLVEF 9 Unmodified _SAFINLVEF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.27587890625 2 520.276575 1038.5386 NaN NaN NaN NaN NaN NaN NaN 97.79 1 97.547 97.047 98.047 -0.24277 0 0 0 0.08978 1 53404 53404 46.021 15.796 1 57288 10766 38206 39075 66861 66861 0.020869382117098212 SAFKVPAKR 9 Unmodified _SAFKVPAKR_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7903442382812 2 502.306001 1002.59745 0.77016 0.00038686 -1.9224 -0.00096563 -1.1522 -0.00057877 502.30269875184945 67.075 0.38232 60.899 60.58 60.962 -6.1757 36 21 3 0 0 0 0.18521 1 43482 43482 11.64 4.3511 1 33135000 + 57289 19026 38207 39076 66862 66862 0.09625459296705685 SAFPHEQPQ 9 Unmodified _SAFPHEQPQ_ 0 0 0 REV__ENSG00000101310|ENST00000650089|SEC23B REV__ENSG00000101310|ENST00000650089|SEC23B MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7446899414062 2 520.743431 1039.47231 0.92974 0.00048416 -0.024648 -1.2835E-05 0.90509 0.00047132 520.7435286380211 41.549 0.3276 36.942 36.846 37.173 -4.6079 31 21 2 0 0 0 0.20428 1 24930 24930 22.736 22.736 1 8116100 + 57290 18158 38208 39077 66863 66863 -0.04584877630327355 SAFPRARRQGV 11 Unmodified _SAFPRARRQGV_ 0 0 0 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8538818359375 2 622.85217 1243.68979 -0.025764 -1.6047E-05 0.62633 0.00039011 0.60057 0.00037406 622.8525475612029 70.039 0.68693 69.559 69.267 69.954 -0.47903 154 34 6 0 0 0 0.58245 2 38193 38193;38407 20.415 20.415 1 1171800000 57291 4932 38209 39078 66864;66865 66864 0.07768937362902761 SAFPRARRQGV 11 Unmodified _SAFPRARRQGV_ 0 0 0 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 ENSG00000137460|ENST00000511601|FHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.852783203125 2 622.85217 1243.68979 0.64189 0.0003998 0.24706 0.00015388 0.88895 0.00055368 622.8524712091922 69.37 1.5242 69.401 69.129 70.653 0.030922 276 78 6 0 0 0 0.631 3 38239 38239;38581;38795 17.113 17.113 1 6933999999.999999 57292 4932 38209 39078 66866;66867;66868 66866 0.07768937362902761 SAFPSNIFY 9 Unmodified _SAFPSNIFY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2529907226562 2 523.2531 1044.49165 0.76878 0.00040226 -0.48313 -0.0002528 0.28565 0.00014947 523.2530726035264 80.713 0.78232 80.221 79.731 80.513 -0.49247 49 32 2 0 0 0 0.41742 2 44188 44188;44298 11.64 2.3415 1 644640 57293 293 38210 39079 66869;66870 66869 -0.02881921339417204 SAFPSNIFY 9 Unmodified _SAFPSNIFY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2535400390625 2 523.2531 1044.49165 0.052219 2.7324E-05 1.2374 0.00064747 1.2896 0.00067479 523.2534806767776 80.002 0.49616 80.06 79.627 80.123 0.057587 38 19 3 0 0 0 0.042911 1 44192 44192 48.346 16.229 1 3850400 57294 293 38210 39079 66871 66871 -0.02881921339417204 SAFPSNIFY 9 Unmodified _SAFPSNIFY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2538452148438 2 523.2531 1044.49165 1.1704 0.00061244 -0.21908 -0.00011463 0.95137 0.00049781 523.2528978217853 87.646 0.97601 81.47 80.999 81.975 -6.1757 98 53 3 0 0 0 0.039985 4 57646 57646;57770;57893;58026 49.933 13.889 1 30231000 57295 293 38210 39079 66872;66873;66874;66875 66872 -0.02881921339417204 SAFPYAHRF 9 Unmodified _SAFPYAHRF_ 0 0 0 ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF;ENSG00000127125|ENST00000372561|PPCS ENST00000471420.1_1_1:42922476-42938912:+|nuORF ENST00000471420.1_1_1:42922476-42938912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2708129882812 2 548.272158 1094.52976 0.19742 0.00010824 -0.77717 -0.0004261 -0.57975 -0.00031786 548.2716594456043 38.756 0.28249 38.767 38.658 38.941 0.011452 18 13 2 0 0 0 0.047196 1 20627 20627 46.021 25.567 1 3642600 57296 3990 38211 39080 66876 66876 -0.013719906341293608 SAFPYAHRF 9 Unmodified _SAFPYAHRF_ 0 0 0 ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF;ENSG00000127125|ENST00000372561|PPCS ENST00000471420.1_1_1:42922476-42938912:+|nuORF ENST00000471420.1_1_1:42922476-42938912:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8508605957031 3 365.850531 1094.52976 1.5841 0.00057954 -0.14271 -5.2212E-05 1.4414 0.00052733 365.8504311795972 42.833 0.34184 38.149 37.982 38.323 -4.6846 40 21 2 0 0 0 0.06187 2 26023 25880;26023 38.176 26.681 1 34211000 57297 3990 38211 39080 66877;66878 66878 -0.013719906341293608 SAFQGHDVGF 10 Unmodified _SAFQGHDVGF_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-2|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.74365234375 2 532.743431 1063.47231 1.0658 0.00056777 -0.65529 -0.0003491 0.41047 0.00021867 532.743057519974 42.801 0.41977 42.801 42.586 43.006 0 55 21 3 0 0 0 0.039874 2 23119 23119;23241 63.227 33.387 1 58517000 57298 2679 38212 39081 66879;66880 66879 -0.056888776303367194 SAFQGHDVGF 10 Unmodified _SAFQGHDVGF_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-2|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7427368164062 2 532.743431 1063.47231 0.1015 5.4075E-05 -0.28747 -0.00015315 -0.18596 -9.9071E-05 532.743251773476 43.037 0.25463 42.727 42.587 42.842 -0.31039 29 11 3 0 0 0 0.16361 1 22945 22945 38.176 22.026 1 24953000 57299 2679 38212 39081 66881 66881 -0.056888776303367194 SAFQGHDVGF 10 Unmodified _SAFQGHDVGF_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2;nc|ENSG00000109854|Q9BUP3-2|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.743896484375 2 532.743431 1063.47231 0.98067 0.00052245 -0.31796 -0.00016939 0.66271 0.00035306 532.7434431347981 48.427 0.54078 43.193 42.923 43.464 -5.2339 86 32 4 0 0 0 0.014503 3 30168 30040;30168;30300 80.676 55.685 1 174460000 57300 2679 38212 39081 66882;66883;66884 66883 -0.056888776303367194 SAFQQLQL 8 Unmodified _SAFQQLQL_ 0 0 0 REV__nc|ENSG00000089250|P29475-3|NOS1 REV__nc|ENSG00000089250|P29475-3|NOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7533569335938 2 467.753267 933.491981 1.1001 0.00051457 0.68691 0.00032131 1.787 0.00083587 467.7530139462888 20.627 0.24608 17.934 17.742 17.988 -2.693 19 14 2 0 0 0 0.80143 1 10890 10890 5.7604 0.52976 1 1500400 + 57301 17838 38213 39082 66885 66885 0.022574983804247495 SAFRGICTM 9 Carbamidomethyl (C),Oxidation (M) _SAFRGIC(Carbamidomethyl (C))TM(Oxidation (M))_ SAFRGIC(1)TM SAFRGICTM(1) SAFRGIC(42)TM SAFRGICTM(42) 0 1 1 nc|ENSG00000083312|Q92973-3|TNPO1;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 nc|ENSG00000083312|Q92973-3|TNPO1 MSMS AL20221201_MKP_PDAC_01 4 529.7404174804688 2 529.741519 1057.46849 NaN NaN NaN NaN NaN NaN NaN 36.091 1 31.898 31.398 32.398 -4.1928 0 0 0 0.10415 1 21036 21036 42.312 12.088 1 57302 1364 38214 39083 66886 66886 125 230 -0.05795006720040874 SAFRSSSSL 9 Unmodified _SAFRSSSSL_ 0 0 0 ENST00000520481.1_1_8:28304597-28321161:-|nuORF;nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16 ENST00000520481.1_1_8:28304597-28321161:-|nuORF ENST00000520481.1_1_8:28304597-28321161:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2389221191406 2 471.237981 940.461409 0.17426 8.2118E-05 1.2045 0.00056762 1.3788 0.00064974 471.2384861623112 66.319 0.33649 65.836 65.668 66.005 -0.48323 28 18 2 0 0 0 0.2143 1 36165 36165 21.747 0 1 3714600 57303 10478 38215 39084 66887 66887 -0.011202800046021366 SAFSGFPSF 9 Unmodified _SAFSGFPSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.4298706054688 1 946.430509 945.423233 0.64162 0.00060724 0.026875 2.5435E-05 0.66849 0.00063268 946.4297693720889 81.722 0.25151 81.227 81.062 81.313 -0.4952 12 9 2 0 0 0 0.32871 1 44734 44734 15.847 4.2069 1 337590 57304 2387 38216 39085 66888 66888 -0.05166165919285959 SAFSGFPSF 9 Unmodified _SAFSGFPSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 946.4303588867188 1 946.430509 945.423233 1.3759 0.0013022 0.47471 0.00044928 1.8506 0.0017515 946.4305334380902 81.167 0.27927 81.227 81.064 81.343 0.059929 20 10 2 0 0 0 0.022193 2 44926 44828;44926 61.357 21.4 1 4408400 57305 2387 38216 39085 66889;66890 66890 -0.05166165919285959 SAFSGFPSF 9 Unmodified _SAFSGFPSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7197265625 2 473.718893 945.423233 1.021 0.00048368 0.15167 7.1851E-05 1.1727 0.00055553 473.71901352444786 81.152 0.22961 81.212 81.114 81.343 0.059929 14 8 2 0 0 0 0.087258 1 44890 44890 36.044 16.605 1 1329900 57306 2387 38216 39085 66891 66891 -0.05166165919285959 SAFSGFPSF 9 Unmodified _SAFSGFPSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.433349609375 1 946.430509 945.423233 0.47588 0.00045039 0.87278 0.00082603 1.3487 0.0012764 946.4314993445058 88.826 0.42972 82.651 82.349 82.779 -6.1757 40 23 2 0 0 0 0.019303 2 58600 58481;58600 64.236 29.052 1 10599000 57307 2387 38216 39085 66892;66893 66893 -0.05166165919285959 SAFSGFPSF 9 Unmodified _SAFSGFPSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7190246582031 2 473.718893 945.423233 0.98826 0.00046816 0.027763 1.3152E-05 1.016 0.00048131 473.71898224986603 88.737 0.47296 82.562 82.373 82.846 -6.1757 43 26 2 0 0 0 0.012148 2 58632 58503;58632 74.423 40.32 1 13869000 57308 2387 38216 39085 66894;66895 66895 -0.05166165919285959 SAFTEEQAVLY 11 Unmodified _SAFTEEQAVLY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.3035278320312 2 629.303518 1256.59248 0.36341 0.0002287 1.0691 0.00067277 1.4325 0.00090147 629.3041501870777 61.078 0.39034 61.078 60.907 61.297 0 50 16 4 0 0 0 0.028752 2 34015 34015;34118 55.503 42.46 1 6648600 57309 7679 38217 39086 66896;66897 66896 -0.025549341472469678 SAFTEEQAVLY 11 Unmodified _SAFTEEQAVLY_ 0 0 0 nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 nc|ENSG00000167881|Q9UHB9-4|SRP68 MSMS AL20221201_MKP_PDAC_01 4 629.3033447265625 2 629.303518 1256.59248 NaN NaN NaN NaN NaN NaN NaN 68.901 1 62.725 62.225 63.225 -6.1757 0 0 0 0.00086493 1 44985 44985 79.596 56.86 1 57310 7679 38217 39086 66898 66898 -0.025549341472469678 SAFTGQQGY 9 Unmodified _SAFTGQQGY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7178649902344 2 479.716882 957.41921 -0.090926 -4.3619E-05 -0.9778 -0.00046907 -1.0687 -0.00051269 479.71610856625324 31.743 0.3195 31.743 31.561 31.88 0 43 15 4 0 0 0 0.031062 2 16500 16500;16601 54.774 12.679 1 5611700 57311 4539 38218 39087 66899;66900 66899 -0.061202554129977216 SAFTGQQGY 9 Unmodified _SAFTGQQGY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4265747070312 1 958.426487 957.41921 -0.39653 -0.00038005 1.18 0.0011309 0.78347 0.0007509 958.4275051827588 31.73 0.25982 31.73 31.6 31.86 0 23 12 3 0 0 0 0.0036082 1 16529 16529 123.45 30.628 1 1907600 57312 4539 38218 39087 66901 66901 -0.061202554129977216 SAFTGQQGY 9 Unmodified _SAFTGQQGY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7172241210938 2 479.716882 957.41921 1.2965 0.00062194 0.089098 4.2742E-05 1.3856 0.00066468 479.71668674200095 37.104 0.39352 32.821 32.613 33.007 -4.2835 49 23 3 0 0 0 0.019303 2 21689 21689;21827 64.236 13.381 1 20394000 57313 4539 38218 39087 66902;66903 66902 -0.061202554129977216 SAFYDSELF 9 Unmodified _SAFYDSELF_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7412719726562 2 539.740022 1077.46549 0.24166 0.00013043 0.93772 0.00050612 1.1794 0.00063656 539.740386849314 76.703 0.40028 76.703 76.491 76.892 0 46 16 4 0 0 0 0.39863 1 42589 42589 12.532 4.6214 1 5637100 57314 13944 38219 39088 66904 66904 -0.07014235301585359 SAFYDSELF 9 Unmodified _SAFYDSELF_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7406005859375 2 539.740022 1077.46549 -0.58348 -0.00031493 1.249 0.00067415 0.66556 0.00035923 539.7405665157693 77.199 0.33115 76.716 76.537 76.868 -0.4826 30 14 3 0 0 0 0.39863 1 42273 42273 12.532 3.9383 1 1749500 57315 13944 38219 39088 66905 66905 -0.07014235301585359 SAFYDSELF 9 Unmodified _SAFYDSELF_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.740022 1077.46549 -0.58348 -0.00031493 1.249 0.00067415 0.66556 0.00035923 539.7405665157693 77.199 0.33115 76.716 76.537 76.868 -0.4826 0.0066418 0.00024878 NaN 12.532 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1749500 57316 13944 38219 39088 -0.07014235301585359 SAFYFDRDT 9 Unmodified _SAFYFDRDT_ 0 0 0 REV__nc|ENSG00000285025|L0R8F8|MIEF1 REV__nc|ENSG00000285025|L0R8F8|MIEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.5027465820312 3 374.501456 1120.48254 0.86354 0.0003234 2.421 0.00090665 3.2845 0.00123 374.50235557639917 50.469 0.19983 50.062 49.957 50.157 -0.40693 14 9 2 0 0 0 0.4887 1 27210 27210 8.1555 3.966 1 2264300 + 57317 30016 38220 39089 66906 66906 -0.07288314695779263 SAGAWWPFL 9 Unmodified _SAGAWWPFL_ 0 0 0 ENST00000525065.1_1_11:117062460-117063438:+|nuORF ENST00000525065.1_1_11:117062460-117063438:+|nuORF ENST00000525065.1_1_11:117062460-117063438:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.75927734375 2 517.758352 1033.50215 NaN NaN NaN NaN NaN NaN NaN 87.907 1 87.402 86.902 87.902 -0.50423 0 0 0 0.84369 1 48082 48082 2.3027 0 1 57318 14789 38221 39090 66907 66907 -0.013258938943408793 SAGEAYLVY 9 Unmodified _SAGEAYLVY_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.4669799804688 1 972.467289 971.460012 0.68356 0.00066474 -0.74027 -0.00071989 -0.056711 -5.515E-05 972.4665845643448 54.741 0.34709 54.741 54.505 54.852 0 36 14 3 0 0 0 0.0083087 2 30417 30308;30417 97.075 40.898 1 17600000 57319 5381 38222 39091 66908;66909 66909 -0.026859140933765957 SAGEAYLVY 9 Unmodified _SAGEAYLVY_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7398986816406 2 486.737283 971.460012 0.77154 0.00037554 0.013954 6.7922E-06 0.7855 0.00038233 486.7372429797419 54.729 0.27751 54.729 54.553 54.83 0 19 11 2 0 0 0 0.016184 1 30352 30352 67.344 35.038 1 5384300 57320 5381 38222 39091 66910 66910 -0.026859140933765957 SAGEAYLVY 9 Unmodified _SAGEAYLVY_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.4682006835938 1 972.467289 971.460012 1.6078 0.0015636 0.11207 0.00010898 1.7199 0.0016726 972.4672814982054 62.544 0.41196 56.368 56.174 56.586 -6.1757 50 20 3 0 0 0 0.012148 2 40259 40259;40392 74.423 40.021 1 43077000 57321 5381 38222 39091 66911;66912 66911 -0.026859140933765957 SAGEAYLVY 9 Unmodified _SAGEAYLVY_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.738525390625 2 486.737283 971.460012 1.9223 0.00093568 -0.55386 -0.00026958 1.3685 0.00066609 486.7371243296583 62.569 0.37243 56.393 56.191 56.563 -6.1757 29 18 2 0 0 0 0.016184 1 40370 40370 67.344 25.249 1 13003000 57322 5381 38222 39091 66913 66913 -0.026859140933765957 SAGFSPIGTAF 11 Unmodified _SAGFSPIGTAF_ 0 0 0 ENST00000592939.1_1_17:76105130-76105382:-|nuORF;ENST00000589217.1_1_17:76103713-76105382:-|nuORF ENST00000592939.1_1_17:76105130-76105382:-|nuORF ENST00000592939.1_1_17:76105130-76105382:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7807006835938 2 527.763832 1053.51311 0.53877 0.00028435 0.28805 0.00015202 0.82683 0.00043637 527.7635818250286 46.278 0.62664 41.323 40.936 41.563 -4.9549 140 44 5 0 0 0 0.58219 1 28325 28325 12.241 0.60036 1 2118799999.9999998 57323 15665 38223 39092 66914 66914 -0.011505363107289668 SAGGTSISY 9 Unmodified _SAGGTSISY_ 0 0 0 REV__ENSG00000128536|ENST00000317716|CDHR3 REV__ENSG00000128536|ENST00000317716|CDHR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.3893432617188 1 842.389039 841.381762 -0.43419 -0.00036576 0.44506 0.00037491 0.010867 9.1539E-06 842.3895211473679 48.385 0.40562 48.385 48.212 48.618 0 48 19 3 0 0 0 0.042911 1 26591 26591 48.346 6.2513 1 24918000 + 57324 19614 38224 39093 66915 66915 -0.045273466786056815 SAGILLRH 8 Unmodified _SAGILLRH_ 0 0 0 REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7637023925781 2 433.763969 865.513385 NaN NaN NaN NaN NaN NaN NaN 22.546 1 22.569 22.069 23.069 0.022896 0 0 0 0.96305 1 11472 11472 7.9102 0 1 + 57325 24251 38225 39094 66916 66916 0.07524928199791248 SAGKSYTF 8 Unmodified _SAGKSYTF_ 0 0 0 REV__nc|ENSG00000172901|Q6Q4G3-4|LVRN REV__nc|ENSG00000172901|Q6Q4G3-4|LVRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 2 430.711068 859.407583 0.19543 8.4175E-05 -0.62109 -0.00026751 -0.42565 -0.00018333 430.7108231465634 52.66 0.19964 52.66 52.573 52.773 0 13 8 2 0 0 0 8.7369 1 29148 29148 7.2892 0 1 988440 + 57326 22686 38226 39095 66917 66917 -0.02774452436347019 SAGKWQQAH 9 Unmodified _SAGKWQQAH_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7704772949219 2 506.75159 1011.48863 NaN NaN NaN NaN NaN NaN NaN 30.835 1 30.835 30.335 31.335 0 0 0 0 0.29524 1 16038 16038 25.399 1.3787 1 + 57327 18301 38227 39096 66918 66918 -0.016657516735790523 SAGLAFQN 8 Unmodified _SAGLAFQN_ 0 0 0 ENSG00000197629|ENST00000361050|MPEG1;ENST00000532980.3_1_11:59055317-59056556:-|nuORF ENSG00000197629|ENST00000361050|MPEG1 ENSG00000197629|ENST00000361050|MPEG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.3994140625 1 807.399544 806.392267 0.73786 0.00059574 -0.23208 -0.00018739 0.50577 0.00040836 807.3991548011305 39.788 0.16855 35.259 35.155 35.323 -4.5294 17 10 2 0 0 0 0.73714 1 23618 23618 13.906 0.39817 1 6100300 57328 9983 38228 39097 66919 66919 -0.018673192335313615 SAGSLRPSQSL 11 Unmodified _SAGSLRPSQSL_ 0 0 0 nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C;ENST00000591795.1_1_19:6468199-6468442:-|nuORF nc|ENSG00000205744|Q8IV53-2|DENND1C nc|ENSG00000205744|Q8IV53-2|DENND1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7962036132812 2 551.796195 1101.57784 -0.00392 -2.163E-06 0.093518 5.1603E-05 0.089598 4.944E-05 551.7959499350234 23.803 0.15865 23.803 23.714 23.873 0 13 7 2 0 0 0 0.5551 1 12125 12125 13.615 2.1202 1 444280 57329 10379 38229 39098 66920 66920 0.031110384952853565 SAGTSSTCGSY 11 Unmodified _SAGTSSTCGSY_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000240038|ENST00000684275|AMY2B;nc|ENSG00000243480|P04746-2|AMY2A;ENSG00000243480|ENST00000414303|AMY2A;ENSG00000237763|ENST00000370083|AMY1A;ENSG00000187733|ENST00000622339|AMY1C;ENSG00000174876|ENST00000330330|AMY1B;CON__Q3MHH8 nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7028198242188 2 510.700571 1019.38659 0.43771 0.00022354 -3.6565 -0.0018674 -3.2188 -0.0016438 510.6984590937586 51.572 0.51598 51.572 51.348 51.864 0 57 23 3 0 0 0 0.63851 1 28518 28518 9.3831 2.66 1 4831100 + 57330 10668 38230 39099 66921 66921 -0.12232830598145483 SAGYAISAY 9 Unmodified _SAGYAISAY_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4300537109375 1 902.425424 901.418148 -0.24476 -0.00022088 0.81137 0.0007322 0.56661 0.00051132 902.4256770767323 44.392 0.2275 44.392 44.284 44.512 0 18 11 2 0 0 0 0.06187 1 24150 24150 42.095 6.0504 1 12325000 57331 9407 38231 39100 66922 66922 -0.03650469781916854 SAHAAIIAY 9 Unmodified _SAHAAIIAY_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7477416992188 2 458.747985 915.481417 0.61667 0.0002829 -0.56629 -0.00025978 0.05038 2.3112E-05 458.7476882427086 39.394 0.3509 39.394 39.202 39.553 0 41 16 3 0 0 0 0.026094 2 21059 21059;21174 57.471 35.725 1 17050000 57332 5811 38232 39101 66923;66924 66923 0.020295157259852203 SAHAAIIAY 9 Unmodified _SAHAAIIAY_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7479553222656 2 458.747985 915.481417 -0.16253 -7.4558E-05 0.41557 0.00019064 0.25304 0.00011608 458.74830198963724 39.63 0.25867 39.333 39.133 39.392 -0.29716 17 11 2 0 0 0 0.070838 1 20897 20897 39.957 24.11 1 2148500 57333 5811 38232 39101 66925 66925 0.020295157259852203 SAHAAIIAY 9 Unmodified _SAHAAIIAY_ 0 0 0 ENSG00000146955|ENST00000537763|RAB19;nc|ENSG00000146955|A4D1S5-2|RAB19 ENSG00000146955|ENST00000537763|RAB19 ENSG00000146955|ENST00000537763|RAB19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7487487792969 2 458.747985 915.481417 0.56074 0.00025724 1.0164 0.00046629 1.5772 0.00072353 458.7480084905955 44.113 0.46468 39.319 39.079 39.544 -4.7947 96 32 4 0 0 0 0.016184 2 26774 26774;26910 67.344 45.597 1 54112000 57334 5811 38232 39101 66926;66927 66926 0.020295157259852203 SAHCPHTPEF 10 Unmodified _SAHCPHTPEF_ 0 0 0 ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN;ENST00000571613.5_1_17:5329514-5335888:+|nuORF;ENST00000570883.5_1_17:5329514-5331594:+|nuORF ENSG00000129197|ENST00000381209|RPAIN ENSG00000129197|ENST00000381209|RPAIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7276000976562 2 563.242741 1124.47093 NaN NaN NaN NaN NaN NaN NaN 90.816 1 90.321 89.821 90.821 -0.49457 0 0 0 0.96981 1 49641 49641 3.9444 1.0552 1 57335 4121 38233 39102 66928 66928 -0.08632834990748961 SAHEFLFHY 9 Unmodified _SAHEFLFHY_ 0 0 0 ENST00000495294.1_1_X:2826020-2847341:-|nuORF;nc|ENSG00000006756|P51689-3|ARSD;ENSG00000006756|ENST00000381154|ARSD ENST00000495294.1_1_X:2826020-2847341:-|nuORF ENST00000495294.1_1_X:2826020-2847341:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1820983886719 3 384.182058 1149.52434 0.14612 5.6137E-05 0.31074 0.00011938 0.45686 0.00017552 384.18216351982744 51.156 0.23935 50.743 50.597 50.836 -0.41351 27 11 3 0 0 0 0.038285 1 27566 27566 38.176 32.392 1 3403400 57336 351 38234 39103 66929 66929 -0.044437142165634214 SAHNLQSVF 9 Unmodified _SAHNLQSVF_ 0 0 0 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 ENSG00000163214|ENST00000457308|DHX57 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7535705566406 2 501.753798 1001.49304 NaN NaN NaN NaN NaN NaN NaN 43.27 1 43.27 42.77 43.77 0 0 0 0 0.27852 1 23490 23490 26.268 5.3969 1 57337 6964 38235 39104 66930 66930 -0.007642872506721687 SAIAHRGGS 9 Unmodified _SAIAHRGGS_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2250671386719 2 428.225208 854.435863 -0.49701 -0.00021283 0.48258 0.00020665 -0.014424 -6.1768E-06 428.2252896898664 17.835 0.18761 17.835 17.74 17.927 0 45 32 2 0 0 0 0.59812 1 8779 8779 1.4819 1.4819 1 755920 57338 322 38236 39105 66931 66931 0.0028229026362396326 SAIAHRGGS 9 Unmodified _SAIAHRGGS_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2258911132812 2 428.225208 854.435863 NaN NaN NaN NaN NaN NaN NaN 17.949 1 17.963 17.463 18.463 0.013865 0 0 0 0.85029 1 8963 8963 1.4819 0.68827 1 57339 322 38236 39105 66932 66932 0.0028229026362396326 SAIAHRGGS 9 Unmodified _SAIAHRGGS_ 0 0 0 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 ENSG00000006007|ENST00000353258|GDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2284851074219 2 428.225208 854.435863 0.97787 0.00041875 0.21914 9.3839E-05 1.197 0.00051259 428.22544841977816 18.841 0.3122 16.22 16.069 16.381 -2.6215 32 21 2 0 0 0 0.52844 1 9884 9884 5.7319 1.4026 1 5909600 57340 322 38236 39105 66933 66933 0.0028229026362396326 SAIDRIFTL 9 Unmodified _SAIDRIFTL_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2938232421875 2 518.295299 1034.57605 0.22951 0.00011895 -0.019998 -1.0365E-05 0.20951 0.00010859 518.2955743223354 76.106 0.42987 75.627 75.455 75.885 -0.47945 35 17 3 0 0 0 0.024189 1 41651 41651 59.368 27.063 1 1668300 57341 9162 38237 39106 66934 66934 0.060140294773418645 SAIDRIFTL 9 Unmodified _SAIDRIFTL_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2963256835938 2 518.295299 1034.57605 1.1978 0.00062081 0.26505 0.00013738 1.4628 0.00075819 518.2951883717648 96.116 0.28252 89.94 89.801 90.084 -6.1757 36 17 3 0 0 0 0.01085 1 63631 63631 78.06 15.488 1 33336000 57342 9162 38237 39106 66935 66935 0.060140294773418645 SAIEDVQLL 9 Unmodified _SAIEDVQLL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.5355224609375 1 987.535703 986.528426 -0.21942 -0.00021668 1.7283 0.0017067 1.5089 0.00149 987.5376270138308 70.586 0.18727 70.586 70.474 70.661 0 14 7 2 0 0 0 0.03568 1 39322 39322 52.268 14.294 1 648710 57343 6274 38238 39107 66936 66936 0.03462330486490828 SAIEDVQLL 9 Unmodified _SAIEDVQLL_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2721862792969 2 494.27149 986.528426 -0.092474 -4.5707E-05 0.751 0.0003712 0.65852 0.00032549 494.271875728747 70.602 0.39302 70.602 70.333 70.726 0 45 17 4 0 0 0 0.019303 1 39323 39323 64.236 15.89 1 2838300 57344 6274 38238 39107 66937 66937 0.03462330486490828 SAIELADI 8 Unmodified _SAIELADI_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;RREB1|p.D746Efs*167|1|0.57|ENSG00000124782|chr6:7230337-7230337|C/-|frameshift_variant nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MSMS AL20221201_MKP_PDAC_01 4 416.2290344238281 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 34.813 1 30.718 30.218 31.218 -4.0951 0 0 0 0.90769 1 20117 20117 18.135 1.1927 1 57345 3815 38239 39108 66938 66938 0.016547008778957206 SAIGRLWC 8 Unmodified _SAIGRLWC_ 0 0 0 ENST00000327483.9_1_16:88949139-88951507:-|nuORF ENST00000327483.9_1_16:88949139-88951507:-|nuORF ENST00000327483.9_1_16:88949139-88951507:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.2383117675781 2 453.23673 904.458907 0.3763 0.00017055 1.2767 0.00057863 1.653 0.00074918 453.23703066222527 87.638 0.38471 87.134 86.923 87.308 -0.50423 40 17 3 0 0 0 0.80311 2 47897 47897;47990 4.756 2.4533 1 1307400 57346 11827 38240 39109 66939;66940 66939 0.0028559305671933544 SAIKENFQF 9 Unmodified _SAIKENFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2779541015625 2 542.277106 1082.53966 0.44086 0.00023907 0.14139 7.667E-05 0.58225 0.00031574 542.2771136407914 50.023 0.47077 50.023 49.812 50.282 0 99 21 7 0 0 0 0.0082353 2 27501 27501;27608 96.111 54.016 1 289900000 57347 8296;16388 38241 39110 66941;66942 66941 0.0016915258061089844 SAIKENFQF 9 Unmodified _SAIKENFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2777709960938 2 542.277106 1082.53966 0.66885 0.0003627 -0.96715 -0.00052446 -0.2983 -0.00016176 542.2764792553509 50.462 0.50711 50.062 49.864 50.371 -0.39994 118 24 7 0 0 0 0.014417 2 27116 27116;27217 69.105 37.837 1 387660000 57348 8296;16388 38241 39110 66943;66944 66943 0.0016915258061089844 SAIKENFQF 9 Unmodified _SAIKENFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2774047851562 2 542.277106 1082.53966 1.4173 0.00076856 -0.25697 -0.00013935 1.1603 0.00062921 542.2769636767857 50.146 0.38354 50.097 49.907 50.291 -0.048824 52 18 4 0 0 0 0.0082353 2 27069 27069;27172 103.42 65.445 1 28564000 57349 8296;16388 38241 39110 66945;66946 66945 0.0016915258061089844 SAIKENFQF 9 Unmodified _SAIKENFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.278564453125 2 542.277106 1082.53966 0.71607 0.00038831 -0.36597 -0.00019846 0.35009 0.00018985 542.2769499682674 55.697 0.73799 49.776 49.474 50.212 -5.9211 223 43 7 0 0 0 0.0086209 4 35321 35321;35459;35588;35728 103.42 57.398 1 1889099999.9999998 57350 8296;16388 38241 39110 66947;66948;66949;66950 66947 0.0016915258061089844 SAIKENFQF 9 Unmodified _SAIKENFQF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1083.425048828125 1 1083.54694 1082.53966 0.6527 0.00070723 -0.56811 -0.00061558 0.084584 9.1651E-05 1083.5462485210026 55.661 0.29905 49.74 49.638 49.937 -5.9211 25 17 2 0 0 0 0.00035075 1 35526 35526 147.24 87.872 1 22969000 57351 8296;16388 38241 39110 66951 66951 0.0016915258061089844 SAINIIDEAF 10 Unmodified _SAINIIDEAF_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7825317382812 2 546.782222 1091.54989 0.27293 0.00014924 3.495 0.001911 3.7679 0.0020602 546.7824736566027 86.078 0.51067 86.078 85.868 86.379 0 61 24 4 0 0 0 0.19566 1 47725 47725 47.749 5.9091 1 4852200 57352 3410 38242 39111 66952 66952 0.007777155151643456 SAINIIDEAF 10 Unmodified _SAINIIDEAF_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.782222 1091.54989 0.34264 0.00018735 -2.4618 -0.0013461 -2.1192 -0.0011587 546.7788725879273 86.656 0.35861 86.153 85.883 86.242 -0.50318 0.037379 -0.0045819 NaN 47.749 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1413000 57353 3410 38242 39111 0.007777155151643456 SAIPDSLLY 9 Unmodified _SAIPDSLLY_ 0 0 0 nc|ENSG00000219200|Q6P5S7-2|RNASEK;ENST00000548577.1_17:6915938-6917031:+|nuORF nc|ENSG00000219200|Q6P5S7-2|RNASEK nc|ENSG00000219200|Q6P5S7-2|RNASEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.5155029296875 1 978.514239 977.506963 1.2794 0.0012519 0.63862 0.0006249 1.918 0.0018768 978.5149141843715 79.354 0.43969 73.179 72.93 73.37 -6.1757 34 24 2 0 0 0 0.013323 1 52041 52041 71.134 3.7897 1 9380000 57354 16548 38243 39112 66953 66953 0.017309454577684846 SAIPGAIDY 9 Unmodified _SAIPGAIDY_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4572143554688 1 906.456724 905.449448 0.29607 0.00026837 0.19047 0.00017265 0.48654 0.00044103 906.4568916396673 53.149 0.50066 53.149 52.9 53.401 0 67 22 4 0 0 0 0.0085164 3 29445 29336;29445;29562 99.799 51.453 1 19060000 57355 6867 38244 39113 66954;66955;66956 66955 -0.007058967478087652 SAIPGAIDY 9 Unmodified _SAIPGAIDY_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.732177734375 2 453.732 905.449448 0.68064 0.00030883 -0.33049 -0.00014995 0.35015 0.00015887 453.7318531448218 53.168 0.38919 53.168 52.938 53.327 0 37 17 3 0 0 0 0.070838 1 29406 29406 39.957 20.518 1 3332900 57356 6867 38244 39113 66957 66957 -0.007058967478087652 SAIPGAIDY 9 Unmodified _SAIPGAIDY_ 0 0 0 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 ENSG00000162496|ENST00000616661|DHRS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.4559936523438 1 906.456724 905.449448 0.87842 0.00079625 -0.74822 -0.00067823 0.13019 0.00011801 906.4560066304193 61.283 0.47207 55.135 54.865 55.337 -6.1478 39 23 2 0 0 0 0.0082661 3 39473 39353;39473;39605 99.799 51.453 1 38001000 57357 6867 38244 39113 66958;66959;66960 66959 -0.007058967478087652 SAIPHPLIM 9 Oxidation (M) _SAIPHPLIM(Oxidation (M))_ SAIPHPLIM(1) SAIPHPLIM(44) 0 0 1 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2;ENST00000559016.1_1_15:49426483-49429634:-|nuORF nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7731018066406 2 497.773145 993.531738 0.59208 0.00029472 -0.048863 -2.4323E-05 0.54322 0.0002704 497.7730290899687 46.872 0.42784 46.535 46.347 46.775 -0.33664 31 21 2 0 0 0 0.052168 1 25144 25144 44.407 21.259 1 6418400 57358 7451 38245 39114 66961 66961 1283 0.034713020595063426 SAIPHPLIM 9 Unmodified _SAIPHPLIM_ 0 0 0 nc|ENSG00000166200|P61201-2|COPS2;ENSG00000166200|ENST00000388901|COPS2;ENST00000559016.1_1_15:49426483-49429634:-|nuORF nc|ENSG00000166200|P61201-2|COPS2 nc|ENSG00000166200|P61201-2|COPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7759704589844 2 489.775688 977.536823 1.375 0.00067346 -0.57237 -0.00028033 0.80267 0.00039313 489.7751106056786 64.48 0.43692 58.304 58.072 58.509 -6.1757 36 23 2 0 0 0 0.016184 1 41783 41783 67.344 22.937 1 25447000 57359 7451 38245 39115 66962 66962 0.04715605922126542 SAIRALTQF 9 Unmodified _SAIRALTQF_ 0 0 0 ENST00000441384.5_1_3:47852163-47883242:+|nuORF ENST00000441384.5_1_3:47852163-47883242:+|nuORF ENST00000441384.5_1_3:47852163-47883242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.7875671386719 2 503.787641 1005.56073 0.13459 6.7807E-05 0.48076 0.0002422 0.61535 0.00031001 503.7879413749277 53.204 0.20027 53.141 53.061 53.262 -0.063419 16 9 2 0 0 0 0.076472 1 28856 28856 38.615 2.1085 1 2121400 57360 13396 38246 39116 66963 66963 0.05817162680136789 SAIVHLINY 9 Unmodified _SAIVHLINY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2894897460938 2 515.290017 1028.56548 0.29161 0.00015026 -0.30388 -0.00015659 -0.012269 -6.3222E-06 515.289750947164 57.887 0.4295 57.397 57.126 57.556 -0.48974 47 20 3 0 0 0 0.0085164 2 31432 31432;31541 99.799 72.915 1 16198000 57361 8363 38247 39117 66964;66965 66964 0.05234046822897653 SAIVHLINY 9 Unmodified _SAIVHLINY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.289306640625 2 515.290017 1028.56548 0.934 0.00048128 -0.57137 -0.00029442 0.36263 0.00018686 515.2895089557348 57.541 0.29619 57.475 57.277 57.573 -0.066036 31 14 3 0 0 0 0.044011 1 31278 31278 47.749 31.902 1 6377000 57362 8363 38247 39117 66966 66966 0.05234046822897653 SAIVHLINY 9 Unmodified _SAIVHLINY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2891235351562 2 515.290017 1028.56548 1.0393 0.00053556 0.13939 7.1828E-05 1.1787 0.00060739 515.2895391203558 63.659 0.43018 57.483 57.322 57.752 -6.1757 53 23 3 0 0 0 0.013041 2 41124 41124;41260 71.922 45.039 1 38757000 57363 8363 38247 39117 66967;66968 66967 0.05234046822897653 SAKDFEVAM 9 Oxidation (M) _SAKDFEVAM(Oxidation (M))_ SAKDFEVAM(1) SAKDFEVAM(52) 0 0 1 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2347412109375 2 507.23405 1012.45355 -0.27158 -0.00013776 1.2963 0.00065753 1.0247 0.00051977 507.2340341240242 27.065 0.41331 27.065 26.782 27.196 0 27 19 2 0 0 0 0.036857 1 13834 13834 51.63 27.609 1 4827800 57364 6480 38248 39118 66969 66969 1136 -0.05218175316394991 SAKEALETDLY 11 Unmodified _SAKEALETDLY_ 0 0 0 ENST00000509268.1_1_5:82400738-82554497:+|nuORF;nc|ENSG00000152422|Q13426-3|XRCC4;ENST00000542685.5_1_5:82400738-82606644:+|nuORF;ENSG00000152422|ENST00000396027|XRCC4;nc|ENSG00000152422|Q13426|XRCC4 ENST00000509268.1_1_5:82400738-82554497:+|nuORF ENST00000509268.1_1_5:82400738-82554497:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3089599609375 2 620.3088 1238.60305 0.24701 0.00015322 -0.069575 -4.3158E-05 0.17744 0.00011007 620.3088901422288 43.372 0.27576 43.372 43.162 43.438 0 28 13 3 0 0 0 0.14513 1 23511 23511 53.404 34.147 1 6876100 57365 6183 38249 39119 66970 66970 -0.006709514927933924 SAKEKWRPF 9 Unmodified _SAKEKWRPF_ 0 0 0 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 ENSG00000102390|ENST00000373358|PBDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5453796386719 3 383.545219 1147.61383 -0.30991 -0.00011886 0.2317 8.8869E-05 -0.078204 -2.9995E-05 383.54531060593234 20.834 0.47738 20.863 20.643 21.12 0.028357 52 21 3 0 0 0 0.43463 1 10499 10499 7.1017 0 1 3795800 57366 2042 38250 39120 66971 66971 0.04592540462795114 SAKKFKYSI 9 Unmodified _SAKKFKYSI_ 0 0 0 ENSG00000147606|ENST00000276609|SLC26A7;nc|ENSG00000147606|Q8TE54-2|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 ENSG00000147606|ENST00000276609|SLC26A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8788452148438 3 357.878087 1070.61243 1.9089 0.00068316 -0.20615 -7.3777E-05 1.7028 0.00060938 357.8780531508272 37.431 0.45974 33.147 32.974 33.434 -4.2835 62 27 3 0 0 0 0.5029 1 22054 22054 4.5289 0.65253 1 48469000 57367 5869 38251 39121 66972 66972 0.07994906374028687 SAKPELPL 8 Unmodified _SAKPELPL_ 0 0 0 ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD ENSG00000188641|ENST00000370192|DPYD MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.7534790039062 2 427.752736 853.490919 0.35004 0.00014973 0.62188 0.00026601 0.97192 0.00041574 427.7530185743932 23.695 0.42808 20.868 20.613 21.041 -2.8273 41 25 2 0 0 0 0.52622 1 12792 12792 32.305 9.1571 1 4711900 57368 9678 38252 39122 66973 66973 0.0583128401152635 SAKRLLLPY 9 Unmodified _SAKRLLLPY_ 0 0 0 ENSG00000075336|ENST00000169551|TIMM21;ENST00000581467.1_1_18:71816037-71822653:+|nuORF;ENST00000577952.1_1_18:71816037-71822462:+|nuORF ENSG00000075336|ENST00000169551|TIMM21 ENSG00000075336|ENST00000169551|TIMM21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.1646118164062 2 530.829309 1059.64407 NaN NaN NaN NaN NaN NaN NaN 51.08 1 51.08 50.58 51.58 0 0 0 0 0.84564 1 28191 28191 2.0598 0 1 57369 1151 38253 39123 66974 66974 0.11662899128009485 SAKTVEQVY 9 Unmodified _SAKTVEQVY_ 0 0 0 REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF REV__ENST00000429744.2_1_1:52645740-52646091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7649536132812 2 512.769114 1023.52368 0.54842 0.00028121 -1.2748 -0.00065367 -0.72637 -0.00037246 512.7684401553536 35.297 0.63204 31.201 31.007 31.639 -4.0951 110 38 4 0 0 0 0.042911 1 20632 20632 48.346 0 1 94777000 + 57370 26955 38254 39124 66975 66975 0.012854463437065533 SAKVLKNLY 9 Unmodified _SAKVLKNLY_ 0 0 0 ENST00000475082.5_1_3:40192542-40204312:+|nuORF;nc|ENSG00000170011|Q8NFW9-5|MYRIP;nc|ENSG00000170011|Q8NFW9-3|MYRIP;nc|ENSG00000170011|Q8NFW9-2|MYRIP;ENSG00000170011|ENST00000302541|MYRIP ENST00000475082.5_1_3:40192542-40204312:+|nuORF ENST00000475082.5_1_3:40192542-40204312:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.76904296875 2 518.313492 1034.61243 0.26716 0.00013847 2.2055 0.0011432 2.4727 0.0012816 518.3150213284933 55.609 0.39398 55.131 54.986 55.379 -0.47798 23 18 2 0 0 0 0.21473 1 30089 30089 1.8442 0 1 1232000 57371 7939 38255 39125 66976 66976 0.09650906374054102 SALAFEQIIK 10 Unmodified _SALAFEQIIK_ 0 0 0 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 nc|ENSG00000187240|Q8NCM8-2|DYNC2H1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.24951171875 2 560.324057 1118.63356 0.42386 0.0002375 0.85174 0.00047725 1.2756 0.00071475 560.3243756345684 51.66 0.17785 51.601 51.533 51.711 -0.058918 14 8 2 0 0 0 0.23558 1 28004 28004 8.1555 1.9497 1 1245900 57372 9547 38256 39126 66977 66977 0.07898871682891695 SALDRCYSVY 10 Carbamidomethyl (C) _SALDRC(Carbamidomethyl (C))YSVY_ SALDRC(1)YSVY SALDRC(67)YSVY 0 1 0 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.28369140625 2 617.282063 1232.54957 0.58889 0.00036351 0.13017 8.0354E-05 0.71906 0.00044387 617.7838383900398 45.657 0.33875 40.702 40.555 40.894 -4.9549 50 22 3 0 0 0 0.031932 2 28009 28009;28160 67.081 45.544 1 17828000 57373 2933 38257 39127 66978;66979 66978 301 -0.057400274763040215 SALDRFNAM 9 Oxidation (M) _SALDRFNAM(Oxidation (M))_ SALDRFNAM(1) SALDRFNAM(48) 0 0 1 nc|ENSG00000263155|P0CAP1-3|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;nc|ENSG00000263155|P0CAP1-8|MYZAP;nc|ENSG00000263155|P0CAP1-5|MYZAP;nc|ENSG00000263155|P0CAP1-7|MYZAP;nc|ENSG00000263155|P0CAP1-6|MYZAP;nc|ENSG00000263155|P0CAP1-9|MYZAP;nc|ENSG00000263155|P0CAP1-2|MYZAP;nc|ENSG00000263155|P0CAP1-11|MYZAP nc|ENSG00000263155|P0CAP1-3|MYZAP nc|ENSG00000263155|P0CAP1-3|MYZAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7452392578125 2 520.745116 1039.47568 -0.72283 -0.00037641 0.82648 0.00043039 0.10366 5.3978E-05 520.7457262972915 32.762 0.13183 32.762 32.658 32.79 0 10 6 2 0 0 0 0.044296 1 17122 17122 47.594 23.574 1 2747200 57374 10852 38258 39128 66980 66980 1731 -0.04247950847980064 SALEALLN 8 Unmodified _SALEALLN_ 0 0 0 ENSG00000176988|ENST00000370467|FMR1NB ENSG00000176988|ENST00000370467|FMR1NB ENSG00000176988|ENST00000370467|FMR1NB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.7350769042969 2 415.734543 829.454533 -0.061026 -2.537E-05 1.5785 0.00065623 1.5175 0.00063086 415.7350786525624 34.71 0.27246 34.738 34.606 34.878 0.027401 27 12 3 0 0 0 0.70294 1 18308 18308 16.942 0 1 10234000 57375 8644 38259 39129 66981 66981 0.032984071148121075 SALEALLN 8 Unmodified _SALEALLN_ 0 0 0 ENSG00000176988|ENST00000370467|FMR1NB ENSG00000176988|ENST00000370467|FMR1NB ENSG00000176988|ENST00000370467|FMR1NB MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.7356262207031 2 415.734543 829.454533 1.1144 0.0004633 2.4384 0.0010137 3.5528 0.001477 415.7351459539219 39.122 0.41338 34.672 34.445 34.858 -4.4509 50 26 3 0 0 0 0.70294 2 23086 23086;23225 16.942 0 1 41280000 57376 8644 38259 39129 66982;66983 66982 0.032984071148121075 SALEEESVF 9 Unmodified _SALEEESVF_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7383728027344 2 505.73748 1009.46041 -0.30496 -0.00015423 0.37331 0.00018879 0.068342 3.4563E-05 505.7379939708054 55.385 0.28981 55.385 55.283 55.573 0 26 12 3 0 0 0 0.49272 1 30802 30802 7.9102 0 1 1294500 57377 2795 38260 39130 66984 66984 -0.04394539164172784 SALEEFSKM 9 Oxidation (M) _SALEEFSKM(Oxidation (M))_ SALEEFSKM(1) SALEEFSKM(64) 0 0 1 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2476196289062 2 529.247157 1056.47976 -0.26062 -0.00013793 1.497 0.00079226 1.2363 0.00065432 529.2484858913957 34.778 0.49732 34.778 34.422 34.919 0 48 25 3 0 0 0 0.01958 1 18386 18386 63.961 25.785 1 6149100 57378 5168 38261 39131 66985 66985 948 -0.04621906144939203 SALEHSIQY 9 Unmodified _SALEHSIQY_ 0 0 0 ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2578735351562 2 524.258914 1046.50327 0.055065 2.8869E-05 -0.8081 -0.00042366 -0.75304 -0.00039479 524.2584696028656 35.322 0.33207 35.322 35.146 35.479 0 48 16 4 0 0 0 0.009483 2 18626 18626;18734 81.89 41.933 1 89694000 57379 3594;14801 38262 39132 66986;66987 66986 -0.018117243160759244 SALEHSIQY 9 Unmodified _SALEHSIQY_ 0 0 0 ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2588500976562 2 524.258914 1046.50327 0.40089 0.00021017 0.31186 0.0001635 0.71275 0.00037367 524.2589157328347 40.146 0.47401 35.617 35.444 35.918 -4.5294 99 40 3 0 0 0 0.020973 2 23987 23846;23987 62.573 35.689 1 111320000 57380 3594;14801 38262 39132 66988;66989 66989 -0.018117243160759244 SALEKFFYF 9 Unmodified _SALEKFFYF_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A;ENST00000586972.1_1_17:40265669-40266402:-|nuORF ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2921142578125 2 576.292225 1150.5699 0.89131 0.00051366 0.38517 0.00022197 1.2765 0.00073563 576.2923418817735 99.183 0.10822 93.007 92.94 93.048 -6.1757 8 5 2 0 0 0 0.037253 1 65990 65990 51.415 18.63 1 27322000 57381 2602 38263 39133 66990 66990 0.0006351124582124612 SALENDPLF 9 Unmodified _SALENDPLF_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2484741210938 2 503.248015 1004.48148 0.61844 0.00031123 -0.20225 -0.00010178 0.41619 0.00020945 503.2484022062728 66.383 0.3811 66.383 66.195 66.576 0 28 16 3 0 0 0 0.039985 1 37061 37061 49.933 23.049 1 2073200 57382 1447 38264 39134 66991 66991 -0.020585290646636167 SALESLAEF 9 Unmodified _SALESLAEF_ 0 0 0 nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.476806640625 1 966.477854 965.470577 0.55832 0.00053961 0.24758 0.00023928 0.8059 0.00077889 966.4781169252126 73.558 0.25951 73.558 73.454 73.713 0 18 11 2 0 0 0 0.30562 1 40941 40941 16.942 0 1 848090 57383 4826 38265 39135 66992 66992 -0.013539314389504398 SALEYFGEM 9 Unmodified _SALEYFGEM_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7741088867188 2 523.7286 1045.44265 0.61778 0.00032355 2.3953 0.0012545 3.013 0.001578 523.7301123766209 81.709 0.33241 81.214 81.037 81.369 -0.4952 25 12 3 0 0 0 0.21564 1 44712 44712 3.9444 1.0552 1 483900 57384 3863 38266 39136 66993 66993 -0.07825577690687169 SALFQIPEY 9 Unmodified _SALFQIPEY_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;DNMBP|p.S135Y|1|0.11|ENSG00000107554|chr10:99957070-99957070|G/T|missense_variant ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.274658203125 2 534.274032 1066.53351 0.29068 0.0001553 0.47093 0.00025161 0.76161 0.00040691 534.2744943148788 80.989 0.22856 80.989 80.817 81.046 0 16 9 2 0 0 0 0.58865 1 44923 44923 2.0598 0 1 469560 57385 2500 38267 39137 66994 66994 0.0029063434908493946 SALGFVYKL 9 Unmodified _SALGFVYKL_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2902526855469 2 499.289485 996.564418 0.62537 0.00031224 -0.041408 -2.0675E-05 0.58396 0.00029157 499.2895013536265 70.313 0.39568 70.349 70.153 70.549 0.035515 40 18 3 0 0 0 0.015445 1 38664 38664 68.081 25.986 1 9359000 57386 6214 38268 39138 66995 66995 0.06599832453991894 SALGYLEGDTY 11 Unmodified _SALGYLEGDTY_ 0 0 0 nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS nc|ENSG00000111602|Q9UNS1-2|TIMELESS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.776611328125 2 594.774593 1187.53463 0.12547 7.4629E-05 1.2628 0.00075107 1.3882 0.00082569 594.7753575454904 61.432 0.19962 61.432 61.297 61.497 0 17 8 3 0 0 0 0.28407 1 34260 34260 27.629 14.586 1 1397500 57387 2797 38269 39139 66996 66996 -0.05163196072635401 SALGYLHSL 9 Unmodified _SALGYLHSL_ 0 0 0 nc|ENSG00000118515|O00141|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF nc|ENSG00000118515|O00141|SGK1 nc|ENSG00000118515|O00141|SGK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.76171875 2 480.761092 959.507631 0.53821 0.00025875 -0.47408 -0.00022792 0.064126 3.0829E-05 480.76108169251063 52.722 0.27832 52.27 52.121 52.4 -0.45173 24 13 2 0 0 0 0.16226 1 28453 28453 26.884 0 1 4797200 57388 16151 38270 39140 66997 66997 0.026257848974864828 SALHIIVQY 9 Unmodified _SALHIIVQY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2421875 2 522.297842 1042.58113 0.1762 9.2029E-05 -0.47435 -0.00024775 -0.29815 -0.00015573 522.2978038804237 58.223 0.20134 57.733 57.639 57.84 -0.48974 16 9 2 0 0 0 0.19205 1 31609 31609 6.2058 0 1 1494700 57389 7825 38271 39141 66998 66998 0.06154333339964069 SALHIIVQY 9 Unmodified _SALHIIVQY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.29833984375 2 522.297842 1042.58113 0.7372 0.00038504 -0.4084 -0.00021331 0.32879 0.00017173 522.2976914017211 57.906 0.37686 57.84 57.634 58.011 -0.066036 36 18 3 0 0 0 0.30202 1 31480 31480 17.113 4.0704 1 4539600 57390 7825 38271 39141 66999 66999 0.06154333339964069 SALHIIVQY 9 Unmodified _SALHIIVQY_ 0 0 0 ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B ENSG00000169018|ENST00000306917|FEM1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2982177734375 2 522.297842 1042.58113 1.3408 0.00070029 -0.4212 -0.00021999 0.91959 0.0004803 522.2978141730296 63.826 0.5495 57.651 57.405 57.955 -6.1757 62 29 3 0 0 0 0.095405 2 41358 41225;41358 34.102 14.845 1 34060000 57391 7825 38271 39141 67000;67001 67001 0.06154333339964069 SALILFWNF 9 Unmodified _SALILFWNF_ 0 0 0 ENST00000490205.1_1_20:57566094-57566594:+|nuORF;ENST00000478389.5_1_20:57566216-57566594:+|nuORF ENST00000490205.1_1_20:57566094-57566594:+|nuORF ENST00000490205.1_1_20:57566094-57566594:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.274169921875 2 555.80276 1109.59097 NaN NaN NaN NaN NaN NaN NaN 65.923 1 65.923 65.423 66.423 0 0 0 0 0.7453 1 36768 36768 7.9102 0 1 57392 14016 38272 39142 67002 67002 0.04055521345321722 SALIQYEI 8 Unmodified _SALIQYEI_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7552185058594 2 468.755475 935.496398 0.43737 0.00020502 -0.9741 -0.00045662 -0.53673 -0.0002516 468.75479156303385 77.23 0.1605 77.23 77.105 77.265 0 11 6 2 0 0 0 0.76266 1 42912 42912 11.64 0 1 287240 + 57393 21844 38273 39143 67003 67003 0.026069628033155823 SALKGHKR 8 Unmodified _SALKGHKR_ 0 0 0 ENSG00000176399|ENST00000325870|DMRTA1;ENSG00000142700|ENST00000404795|DMRTA2 ENSG00000176399|ENST00000325870|DMRTA1 ENSG00000176399|ENST00000325870|DMRTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7748413085938 2 448.774868 895.535184 0.47882 0.00021488 -0.19142 -8.5904E-05 0.2874 0.00012898 448.77477254521915 34.605 0.19296 34.632 34.52 34.713 0.027401 14 8 2 0 0 0 0.5284 1 18251 18251 32.117 0 1 2407800 57394 5443 38274 39144 67004 67004 0.08323732948383622 SALKGHKR 8 Unmodified _SALKGHKR_ 0 0 0 ENSG00000176399|ENST00000325870|DMRTA1;ENSG00000142700|ENST00000404795|DMRTA2 ENSG00000176399|ENST00000325870|DMRTA1 ENSG00000176399|ENST00000325870|DMRTA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7760620117188 2 448.774868 895.535184 1.0343 0.00046417 -0.030345 -1.3618E-05 1.004 0.00045055 448.7750480571192 39.271 0.34787 34.821 34.616 34.964 -4.4509 30 21 2 0 0 0 0.61462 1 23273 23273 24.674 0 1 12854000 57395 5443 38274 39144 67005 67005 0.08323732948383622 SALNRADLM 9 Oxidation (M) _SALNRADLM(Oxidation (M))_ SALNRADLM(1) SALNRADLM(50) 0 0 1 ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3;ENST00000417886.1_1_2:24303714-24307337:-|nuORF ENSG00000115129|ENST00000238721|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7533264160156 2 503.752941 1005.49133 -0.07824 -3.9413E-05 -0.56795 -0.00028611 -0.64619 -0.00032552 503.75267078462286 25.972 0.20725 25.972 25.819 26.026 0 18 9 3 0 0 0 0.040683 1 13331 13331 49.554 20.473 1 1966000 57396 3088 38275 39145 67006 67006 538 -0.011196643309290266 SALNRADLM 9 Oxidation (M) _SALNRADLM(Oxidation (M))_ SALNRADLM(1) SALNRADLM(46) 0 0 1 ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3;ENST00000417886.1_1_2:24303714-24307337:-|nuORF ENSG00000115129|ENST00000238721|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7533264160156 2 503.752941 1005.49133 -0.096239 -4.8481E-05 -0.71218 -0.00035876 -0.80842 -0.00040724 503.7525860003932 26.233 0.19765 26.233 26.125 26.323 0 16 11 2 0 0 0 0.047714 1 13455 13455 45.74 16.658 1 1980200 57397 3088 38275 39145 67007 67007 538 -0.011196643309290266 SALNRADLM 9 Unmodified _SALNRADLM_ 0 0 0 ENSG00000115129|ENST00000238721|TP53I3;nc|ENSG00000115129|Q53FA7-2|TP53I3;ENST00000417886.1_1_2:24303714-24307337:-|nuORF ENSG00000115129|ENST00000238721|TP53I3 ENSG00000115129|ENST00000238721|TP53I3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7550048828125 2 495.755484 989.496415 0.88201 0.00043726 -1.303 -0.00064595 -0.42096 -0.00020869 495.75498157055387 42.9 0.32504 38.215 38.089 38.414 -4.6846 36 20 2 0 0 0 0.020316 1 25968 25968 63.227 17.528 1 14120000 57398 3088 38275 39146 67008 67008 0.0012463953167980435 SALPAVTEM 9 Oxidation (M) _SALPAVTEM(Oxidation (M))_ SALPAVTEM(1) SALPAVTEM(48) 0 0 1 ENST00000532998.5_1_17:8077523-8077748:-|nuORF;ENST00000529756.1_1_17:8077523-8079276:-|nuORF;ENSG00000179029|ENST00000437139|TMEM107;nc|ENSG00000179029|Q6UX40-4|TMEM107 ENST00000532998.5_1_17:8077523-8077748:-|nuORF ENST00000532998.5_1_17:8077523-8077748:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7300415039062 2 467.731143 933.447733 0.55123 0.00025783 -2.2345 -0.0010452 -1.6833 -0.00078733 467.72996054185546 39.41 0.28401 39.41 39.224 39.508 0 24 13 3 0 0 0 0.042911 1 21128 21128 48.346 23.672 1 2526900 57399 8801 38276 39147 67009 67009 1486 -0.021652738280636186 SALPLAIKY 9 Unmodified _SALPLAIKY_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000076356|ENST00000367033|PLXNA2;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2968444824219 2 488.29731 974.580068 0.86753 0.00042361 -1.4342 -0.00070033 -0.56669 -0.00027671 488.29623482928594 62.34 0.27209 61.852 61.704 61.976 -0.48764 31 12 3 0 0 0 0.08691 2 33919 33919;34023 36.127 14.38 1 4118600 57400 3047;4271;1186;10555 38277 39148 67010;67011 67010 0.0917611897103825 SALPLAIKY 9 Unmodified _SALPLAIKY_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000076356|ENST00000367033|PLXNA2;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2957763671875 2 488.29731 974.580068 0.52319 0.00025547 -1.1838 -0.00057802 -0.66057 -0.00032255 488.29638881748235 61.949 0.25222 61.917 61.772 62.024 -0.032787 30 12 3 0 0 0 0.024882 1 33805 33805 58.679 24.576 1 12346000 57401 3047;4271;1186;10555 38277 39148 67012 67012 0.0917611897103825 SALPLAIKY 9 Unmodified _SALPLAIKY_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000076356|ENST00000367033|PLXNA2;ENSG00000114554|ENST00000393409|PLXNA1;ENSG00000221866|ENST00000321063|PLXNA4;ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2986755371094 2 488.29731 974.580068 0.72344 0.00035326 0.31728 0.00015493 1.0407 0.00050819 488.2975486684983 67.448 0.47824 61.272 61.02 61.499 -6.1757 56 26 3 0 0 0 0.039985 2 43851 43851;43985 49.933 23.049 1 32048000 57402 3047;4271;1186;10555 38277 39148 67013;67014 67013 0.0917611897103825 SALPTVVAY 9 Unmodified _SALPTVVAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7579650878906 2 460.758018 919.501483 0.47154 0.00021727 -0.13998 -6.4498E-05 0.33156 0.00015277 460.75792463016364 61.895 0.33704 61.895 61.707 62.044 0 25 14 2 0 0 0 0.2001 1 34483 34483 23.148 1.4018 1 3278600 57403 2210;16099 38278 39149 67015 67015 0.038512666659471506 SALPTVVAY 9 Unmodified _SALPTVVAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.5095825195312 1 920.50876 919.501483 0.064297 5.9186E-05 0.37862 0.00034852 0.44291 0.0004077 920.5090983841486 61.874 0.33704 61.874 61.707 62.044 0 36 14 3 0 0 0 0.0090851 1 34549 34549 85.357 7.3724 1 5560100 57404 2210;16099 38278 39149 67016 67016 0.038512666659471506 SALPTVVAY 9 Unmodified _SALPTVVAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5093994140625 1 920.50876 919.501483 0.45286 0.00041686 -1.5733 -0.0014482 -1.1204 -0.0010313 920.5062286164604 62.477 0.39627 61.99 61.809 62.206 -0.48764 39 18 3 0 0 0 0.019303 1 34080 34080 64.236 6.765 1 6604000 57405 2210;16099 38278 39149 67017 67017 0.038512666659471506 SALPTVVAY 9 Unmodified _SALPTVVAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7561340332031 2 460.758018 919.501483 0.78845 0.00036329 -0.32357 -0.00014909 0.46488 0.0002142 460.7580002857775 69.442 0.41731 63.267 63.089 63.506 -6.1757 32 21 2 0 0 0 0.2001 1 45331 45331 23.148 1.4018 1 37208000 57406 2210;16099 38278 39149 67018 67018 0.038512666659471506 SALPTVVAY 9 Unmodified _SALPTVVAY_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.5094604492188 1 920.50876 919.501483 0.61 0.00056151 0.98283 0.0009047 1.5928 0.0014662 920.5100243565748 69.511 0.43521 63.335 63.071 63.506 -6.1757 44 22 3 0 0 0 0.0095811 1 45361 45361 81.613 14.269 1 51459000 57407 2210;16099 38278 39149 67019 67019 0.038512666659471506 SALRAFESY 9 Unmodified _SALRAFESY_ 0 0 0 ENSG00000105656|ENST00000262809|ELL;ENST00000596915.1_1_19:18583509-18632865:-|nuORF ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2612915039062 2 522.261456 1042.50836 -0.054219 -2.8317E-05 0.18996 9.921E-05 0.13574 7.0893E-05 522.2613866605138 44.927 0.24743 44.927 44.867 45.114 0 21 12 2 0 0 0 0.085319 1 24473 24473 36.506 5.2379 1 12220000 57408 2348 38279 39150 67020 67020 -0.011194204534604069 SALRAFESY 9 Unmodified _SALRAFESY_ 0 0 0 ENSG00000105656|ENST00000262809|ELL;ENST00000596915.1_1_19:18583509-18632865:-|nuORF ENSG00000105656|ENST00000262809|ELL ENSG00000105656|ENST00000262809|ELL MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7631225585938 2 522.261456 1042.50836 1.1553 0.00060336 -0.48801 -0.00025487 0.66727 0.00034849 522.2608515369145 50.635 0.47268 45.069 44.763 45.236 -5.5667 54 29 2 0 0 0 0.014182 2 31870 31719;31870 69.338 34.936 1 39634000 57409 2348 38279 39150 67021;67022 67022 -0.011194204534604069 SALRAQETF 9 Unmodified _SALRAQETF_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7672729492188 2 511.766906 1021.51926 -0.71156 -0.00036415 1.1468 0.00058691 0.43527 0.00022276 511.76723832241123 32.159 0.33347 32.159 31.983 32.316 0 40 16 3 0 0 0 0.011291 1 16745 16745 76.825 20.648 1 8565800 57410 5248 38280 39151 67023 67023 0.009359819208157205 SALRAQETF 9 Unmodified _SALRAQETF_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7670288085938 2 511.766906 1021.51926 0.36992 0.00018931 -1.0319 -0.00052809 -0.66198 -0.00033878 511.76709728294236 36.507 0.44703 32.25 32.104 32.551 -4.2567 43 27 2 0 0 0 0.0085366 2 21282 21282;21404 90.135 38.505 1 25710000 57411 5248 38280 39151 67024;67025 67024 0.009359819208157205 SALSSAPHAE 10 Unmodified _SALSSAPHAE_ 0 0 0 REV__nc|ENSG00000138162|O95359-3|TACC2 REV__nc|ENSG00000138162|O95359-3|TACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2355041503906 2 485.235439 968.456324 0.6035 0.00029284 -1.5154 -0.00073531 -0.91187 -0.00044247 485.2348920544634 86.742 0.30851 86.239 86.089 86.398 -0.50318 19 11 2 0 0 0 0.6966 1 47454 47454 3.2813 0.97858 1 636050 + 57412 20310 38281 39152 67026 67026 -0.02916583867238387 SALYQLRY 8 Unmodified _SALYQLRY_ 0 0 0 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.251708984375 2 507.274367 1012.53418 0.1988 0.00010085 -1.6956 -0.00086011 -1.4968 -0.00075926 507.2736810291755 35.644 0.15805 35.644 35.574 35.732 0 10 7 2 0 0 0 8.7369 1 18845 18845 12.532 0 1 1336800 + 57413 17827 38282 39153 67027 67027 0.028414737887942465 SAMEDQLRSD 10 Unmodified _SAMEDQLRSD_ 0 0 0 nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB;ENSG00000070182|ENST00000644917|SPTB nc|ENSG00000070182|P11277-3|SPTB nc|ENSG00000070182|P11277-3|SPTB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1719360351562 3 384.50476 1150.49245 -0.79427 -0.0003054 3.8442 0.0014781 3.0499 0.0011727 384.5064253359057 28.172 0.18283 28.172 28.109 28.292 0 10 8 2 0 0 0 0.2383 1 14576 14576 2.6312 1.039 1 354790 57414 1020 38283 39154 67028 67028 -0.07677494752692837 SAMEEMEFQRF 11 2 Oxidation (M) _SAM(Oxidation (M))EEM(Oxidation (M))EFQRF_ SAM(1)EEM(1)EFQRF SAM(73)EEM(73)EFQRF 0 0 2 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 718.7951049804688 2 718.794677 1435.5748 -0.073718 -5.2988E-05 0.30982 0.0002227 0.23611 0.00016971 718.7952551613432 40.032 0.23895 40.032 39.892 40.131 0 35 11 4 0 0 0 0.0062377 1 21473 21473 73.196 63.813 1 5716400 57415 5908 38284 39155 67029 67029 1057;1058 -0.12556340736045968 SAMETVLQY 9 Oxidation (M) _SAM(Oxidation (M))ETVLQY_ SAM(1)ETVLQY SAM(57)ETVLQY 0 0 1 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2473754882812 2 529.247157 1056.47976 0.97529 0.00051617 -0.15202 -8.0454E-05 0.82327 0.00043572 529.2470796458441 46.092 0.49068 46.092 45.86 46.351 0 42 23 2 0 0 0 0.026094 2 25207 25090;25207 57.471 28.985 1 23644000 57416 9939 38285 39156 67030;67031 67031 1606 -0.04621906144939203 SAMETVLQY 9 Unmodified _SAMETVLQY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2476196289062 2 521.2497 1040.48485 0.42348 0.00022074 -0.66112 -0.00034461 -0.23764 -0.00012387 521.250144067336 58.94 0.44124 58.94 58.654 59.095 0 45 19 3 0 0 0 0.16226 1 32796 32796 26.884 15.243 1 5758200 57417 9939 38285 39157 67032 67032 -0.033776022823076346 SAMETVLQY 9 Unmodified _SAMETVLQY_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.25 2 521.2497 1040.48485 0.70316 0.00036652 0.31204 0.00016265 1.0152 0.00052917 521.2504463978153 66.886 0.4407 60.71 60.503 60.944 -6.1757 58 24 3 0 0 0 0.026094 1 43538 43538 57.471 28.985 1 44075000 57418 9939 38285 39157 67033 67033 -0.033776022823076346 SAMEVVPAL 9 Oxidation (M) _SAM(Oxidation (M))EVVPAL_ SAM(1)EVVPAL SAM(82)EVVPAL 0 0 1 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2445373535156 2 466.741511 931.468469 -0.068031 -3.1753E-05 -0.23181 -0.00010819 -0.29984 -0.00013995 466.7410651456466 55.979 0.46481 55.979 55.719 56.184 0 76 27 4 0 0 0 0.0094915 2 31022 31022;31134 81.864 34.943 1 24900000 57419 16205 38286 39158 67034;67035 67034 1808 -6.834484111095662E-06 SAMEVVPAL 9 Oxidation (M) _SAM(Oxidation (M))EVVPAL_ SAM(1)EVVPAL SAM(67)EVVPAL 0 0 1 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4760131835938 1 932.475745 931.468469 -0.17402 -0.00016227 0.39235 0.00036585 0.21833 0.00020358 932.4753961340099 55.948 0.44847 55.948 55.756 56.204 0 61 24 4 0 0 0 0.016184 2 31049 31049;31158 67.344 16.489 1 11801000 57420 16205 38286 39158 67036;67037 67036 1808 -6.834484111095662E-06 SAMEVVPAL 9 Oxidation (M) _SAM(Oxidation (M))EVVPAL_ SAM(1)EVVPAL SAM(55)EVVPAL 0 0 1 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4749145507812 1 932.475745 931.468469 1.3016 0.0012137 1.0426 0.00097219 2.3442 0.0021859 932.4766083055883 63.879 0.27554 57.703 57.506 57.782 -6.1757 26 15 2 0 0 0 0.031062 2 41230 41230;41370 54.774 14.811 1 7988800 57421 16205 38286 39158 67038;67039 67038 1808 -6.834484111095662E-06 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 916.4803466796875 1 916.480831 915.473554 0.17655 0.0001618 -0.25654 -0.00023511 -0.079994 -7.3313E-05 916.4811266970407 68.96 0.2823 68.96 68.764 69.046 0 19 11 2 0 0 0 0.052168 1 38411 38411 44.407 14.182 1 725850 57422 16205 38286 39159 67040 67040 0.0124362041420909 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7434692382812 2 458.744053 915.473554 NaN NaN NaN NaN NaN NaN NaN 68.994 1 68.994 68.494 69.494 0 0 0 0 0.43505 1 38447 38447 18.135 5.6034 1 57423 16205 38286 39159 67041 67041 0.0124362041420909 SAMEVVPAL 9 Unmodified _SAMEVVPAL_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.7440185546875 2 458.744053 915.473554 0.63907 0.00029317 -1.2321 -0.00056523 -0.59306 -0.00027206 458.743809856574 76.336 0.64911 70.16 69.801 70.45 -6.1757 50 35 2 0 0 0 0.0077963 3 49957 49839;49957;50089 109.63 38.914 1 15440000 57424 16205 38286 39159 67042;67043;67044 67043 0.0124362041420909 SAMKAVTEL 9 Unmodified _SAMKAVTEL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2546997070312 2 475.254785 948.495018 0.51953 0.00024691 0.7227 0.00034346 1.2422 0.00059037 475.2550363907764 44.164 0.27545 39.312 39.186 39.461 -4.852 28 19 2 0 0 0 0.040683 1 26923 26923 49.554 1.8056 1 14503000 57425 4050 38287 39160 67045 67045 0.018710054429107004 SAMKAVTEL 9 Unmodified _SAMKAVTEL_ 0 0 0 ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH ENSG00000128245|ENST00000248975|YWHAH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 475.254785 948.495018 0.26477 0.00012583 1.406 0.00066821 1.6708 0.00079404 475.2552001071716 39.69 0.16253 39.69 39.595 39.758 0 0.18911 0.00048387 NaN 49.554 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1130300 57426 4050 38287 39160 0.018710054429107004 SAMMQWLQKM 10 Unmodified _SAMMQWLQKM_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5332336425781 3 418.532828 1252.57666 0.0049032 2.0521E-06 -1.0099 -0.00042266 -1.005 -0.00042061 418.53234095857147 70.062 0.21404 69.583 69.401 69.615 -0.47903 16 11 2 0 0 0 0.66569 1 38271 38271 3.5871 0 1 2971700 57427 6155;16276 38288 39161 67046 67046 -0.03952958461150047 SAMPIEVMM 9 3 Oxidation (M) _SAM(Oxidation (M))PIEVM(Oxidation (M))M(Oxidation (M))_ SAM(1)PIEVM(1)M(1) SAM(42)PIEVM(42)M(42) 0 0 3 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7232666015625 2 528.724146 1055.43374 -0.86649 -0.00045813 -0.029851 -1.5783E-05 -0.89634 -0.00047392 528.7241228552087 32.609 0.26142 32.609 32.472 32.733 0 25 14 2 0 0 0 0.06187 1 17046 17046 42.095 29.563 1 2584400 57428 1917 38289 39162 67047 67047 322;323;324 -0.09176010643022892 SAMPRAQPSSA 11 Unmodified _SAMPRAQPSSA_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7706298828125 2 551.769123 1101.52369 0.76529 0.00042226 0.52574 0.00029009 1.291 0.00071235 551.7693945153982 46.183 0.66952 46.149 45.878 46.548 -0.033417 55 31 2 0 0 0 0.59689 1 24859 24859 11.495 2.1116 1 4356700 57429 3923 38290 39163 67048 67048 -0.023008769279385888 SAMPTVRSF 9 Oxidation (M) _SAM(Oxidation (M))PTVRSF_ SAM(1)PTVRSF SAM(58)PTVRSF 0 0 1 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2511291503906 2 506.250034 1010.48552 -0.15058 -7.623E-05 1.0188 0.00051576 0.86821 0.00043953 506.2508649456839 31.392 0.22136 31.289 31.136 31.357 -0.10269 20 8 3 0 0 0 0.025842 1 16302 16302 57.722 30.838 1 7066100 57430 7756 38291 39164 67049 67049 1321 -0.01930762842596323 SAMPTVRSF 9 Oxidation (M) _SAM(Oxidation (M))PTVRSF_ SAM(1)PTVRSF SAM(46)PTVRSF 0 0 1 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2508239746094 2 506.250034 1010.48552 0.81199 0.00041107 -1.6793 -0.00085015 -0.86731 -0.00043908 506.24966446811374 35.163 0.29887 31.068 30.856 31.155 -4.0951 29 17 2 0 0 0 0.047788 1 20354 20354 45.7 25.246 1 12514000 57431 7756 38291 39164 67050 67050 1321 -0.01930762842596323 SAMPTVRSF 9 Oxidation (M) _SAM(Oxidation (M))PTVRSF_ SAM(1)PTVRSF SAM(60)PTVRSF 0 0 1 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MSMS AL20221201_MKP_PDAC_01 4 506.2497863769531 2 506.250034 1010.48552 NaN NaN NaN NaN NaN NaN NaN 34.518 1 30.423 29.923 30.923 -4.0951 0 0 0 0.044471 1 19908 19908 60.074 39.62 1 57432 7756 38291 39164 67051 67051 1321 -0.01930762842596323 SAMPTVRSF 9 Unmodified _SAMPTVRSF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2532043457031 2 498.252577 994.490601 0.80264 0.00039992 0.79236 0.00039479 1.595 0.00079471 498.2530676801122 48.934 0.59132 43.537 43.084 43.676 -5.3961 52 35 3 0 0 0 0.05483 1 30475 30475 43.772 25.626 1 36664000 57433 7756 38291 39165 67052 67052 -0.006864589799761234 SAMPTVRSF 9 Unmodified _SAMPTVRSF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MSMS AL20221201_MKP_PDAC_01 4 498.2543640136719 2 498.252577 994.490601 NaN NaN NaN NaN NaN NaN NaN 49.087 1 43.691 43.191 44.191 -5.3961 0 0 0 0.098496 1 30634 30634 43.772 24.515 1 57434 7756 38291 39165 67053 67053 -0.006864589799761234 SANALAIVF 9 Unmodified _SANALAIVF_ 0 0 0 nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A nc|ENSG00000066933|B2RTY4-2|MYO9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 905.5125732421875 1 905.509094 904.501818 -0.015901 -1.4398E-05 0.37373 0.00033842 0.35783 0.00032402 905.5098447407007 86.348 0.23126 85.845 85.745 85.976 -0.50318 13 9 2 0 0 0 0.30202 1 47238 47238 17.113 1.2657 1 359500 57435 945 38292 39166 67054 67054 0.045746863858198594 SANGAILAY 9 Unmodified _SANGAILAY_ 0 0 0 ENSG00000172780|ENST00000315150|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF;nc|ENSG00000172780|Q86YS6-2|RAB43 ENSG00000172780|ENST00000315150|RAB43 ENSG00000172780|ENST00000315150|RAB43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.457275390625 1 879.457059 878.449782 0.48376 0.00042545 0.56611 0.00049787 1.0499 0.00092332 879.4575300054894 49.506 0.33731 49.506 49.333 49.671 0 42 14 4 0 0 0 0.0082353 2 27186 27186;27301 96.111 38.64 1 23982000 57436 8254 38293 39167 67055;67056 67055 0.005695229720345196 SANGAILAY 9 Unmodified _SANGAILAY_ 0 0 0 ENSG00000172780|ENST00000315150|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF;nc|ENSG00000172780|Q86YS6-2|RAB43 ENSG00000172780|ENST00000315150|RAB43 ENSG00000172780|ENST00000315150|RAB43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2325134277344 2 440.232168 878.449782 0.64389 0.00028346 0.37581 0.00016544 1.0197 0.0004489 440.23232548408487 49.485 0.27687 49.485 49.352 49.629 0 25 11 3 0 0 0 0.010818 1 27239 27239 78.149 27.294 1 4496200 57437 8254 38293 39167 67057 67057 0.005695229720345196 SANGAILAY 9 Unmodified _SANGAILAY_ 0 0 0 ENSG00000172780|ENST00000315150|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF;nc|ENSG00000172780|Q86YS6-2|RAB43 ENSG00000172780|ENST00000315150|RAB43 ENSG00000172780|ENST00000315150|RAB43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 879.458251953125 1 879.457059 878.449782 0.40437 0.00035563 -0.34446 -0.00030294 0.059911 5.2689E-05 879.4567740751352 56.833 0.37083 50.856 50.668 51.038 -5.9769 41 21 2 0 0 0 0.0082353 3 36222 36185;36222;36345 107.19 52.413 1 37636000 57438 8254 38293 39167 67058;67059;67060 67059 0.005695229720345196 SANGAILAY 9 Unmodified _SANGAILAY_ 0 0 0 ENSG00000172780|ENST00000315150|RAB43;ENST00000561790.1_1_16:46660318-46660894:-|nuORF;nc|ENSG00000172780|Q86YS6-2|RAB43 ENSG00000172780|ENST00000315150|RAB43 ENSG00000172780|ENST00000315150|RAB43 MSMS AL20221201_MKP_PDAC_01 4 440.23291015625 2 440.232168 878.449782 NaN NaN NaN NaN NaN NaN NaN 56.809 1 50.832 50.332 51.332 -5.9769 0 0 0 0.017438 1 36283 36283 81.89 35.869 1 57439 8254 38293 39167 67061 67061 0.005695229720345196 SANILLDEAF 10 Unmodified _SANILLDEAF_ 0 0 0 ENSG00000198001|ENST00000613694|IRAK4;nc|ENSG00000198001|Q9NWZ3-2|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 ENSG00000198001|ENST00000613694|IRAK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7828979492188 2 546.782222 1091.54989 0.27293 0.00014924 3.495 0.001911 3.7679 0.0020602 546.7824736566027 86.078 0.51067 86.078 85.868 86.379 0 61 24 4 0 0 0 0.41822 1 47626 47626 30.637 0 1 4852200 57440 10036 38294 39168 67062 67062 0.007777155151643456 SANSHNIAL 9 Unmodified _SANSHNIAL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7377624511719 2 463.738148 925.461744 NaN NaN NaN NaN NaN NaN NaN 29.665 1 29.665 29.165 30.165 0 0 0 0 0.53226 1 15375 15375 14.838 2.3067 1 57441 583 38295 39169 67063 67063 -0.003968602847749025 SANSHNIAL 9 Unmodified _SANSHNIAL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MSMS AL20221201_MKP_PDAC_01 4 463.7388000488281 2 463.738148 925.461744 NaN NaN NaN NaN NaN NaN NaN 32.781 1 28.925 28.425 29.425 -3.8562 0 0 0 0.091025 1 18725 18725 45.7 11.597 1 57442 583 38295 39169 67064 67064 -0.003968602847749025 SAPAPLTPTAA 11 Unmodified _SAPAPLTPTAA_ 0 0 0 ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF ENST00000452135.6_3_5:179707603-179719088:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7713012695312 2 498.771657 995.528761 NaN NaN NaN NaN NaN NaN NaN 13.816 1 13.816 13.316 14.316 0 0 0 0 0.9435 1 6539 6539 0 0 1 57443 13539 38296 39170 67065 67065 0.03081750206297329 SAPDTFPLS 9 Unmodified _SAPDTFPLS_ 0 0 0 REV__nc|ENSG00000280055|Q8N9X5|LINC02912 REV__nc|ENSG00000280055|Q8N9X5|LINC02912 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.45068359375 1 934.451639 933.444362 0.27421 0.00025624 -0.24145 -0.00022562 0.032762 3.0615E-05 934.4513537202857 72.198 0.28813 72.198 72.074 72.362 0 22 12 2 0 0 0 0.30562 1 40167 40167 16.942 0 1 1354000 + 57444 30006 38297 39171 67066 67066 -0.025022006104450156 SAPELLEFL 9 Unmodified _SAPELLEFL_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7763366699219 2 509.776408 1017.53826 0.34003 0.00017334 -0.16832 -8.5804E-05 0.17171 8.7535E-05 509.7762628425671 100.41 0.10755 100.41 100.35 100.46 0 9 3 3 0 0 0 0.038285 1 55435 55435 50.855 14.811 1 10063000 57445 6807 38298 39172 67067 67067 0.030195184918625273 SAPELLEFL 9 Unmodified _SAPELLEFL_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7760925292969 2 509.776408 1017.53826 0.09121 4.6497E-05 -0.5034 -0.00025662 -0.41219 -0.00021012 509.776124446592 100.51 0.13541 100.38 100.3 100.44 -0.13293 16 5 4 0 0 0 0.023164 1 54864 54864 60.39 15.983 1 19537000 57446 6807 38298 39172 67068 67068 0.030195184918625273 SAPELLEFL 9 Unmodified _SAPELLEFL_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7764892578125 2 509.776408 1017.53826 0.76589 0.00039043 0.11569 5.8978E-05 0.88158 0.00044941 509.7763132570973 101.36 0.26624 95.185 95.107 95.373 -6.1757 23 8 4 0 0 0 0.023164 1 67991 67991 60.39 15.983 1 150930000 57447 6807 38298 39172 67069 67069 0.030195184918625273 SAPELLEFL 9 Unmodified _SAPELLEFL_ 0 0 0 ENSG00000161714|ENST00000619929|PLCD3;ENST00000542173.1_1_17:43195641-43196287:-|nuORF ENSG00000161714|ENST00000619929|PLCD3 ENSG00000161714|ENST00000619929|PLCD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 509.776408 1017.53826 1.5752 0.00080299 -0.87467 -0.00044589 0.70052 0.00035711 509.7765252445676 100.44 0.083473 100.4 100.35 100.43 -0.036301 0.0048743 -0.00054442 NaN 60.39 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1057300 57448 6807 38298 39172 0.030195184918625273 SAPGRPIC 8 Unmodified _SAPGRPIC_ 0 0 0 REV__ENST00000575425.1_1_17:7239912-7245270:+|nuORF REV__ENST00000575425.1_1_17:7239912-7245270:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4071655273438 1 800.408334 799.401058 0.98094 0.00078515 -0.56147 -0.00044941 0.41947 0.00033574 800.4078184927715 70.507 0.21191 70.542 70.424 70.636 0.035515 12 9 2 0 0 0 0.79669 1 38796 38796 8.5933 0 1 982190 + 57449 28972 38299 39173 67070 67070 -0.006666688687118949 SAPQVYIE 8 Unmodified _SAPQVYIE_ 0 0 0 REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF REV__ENST00000594090.5_1_19:50491627-50519408:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7324829101562 2 453.732 905.449448 0.68064 0.00030883 -0.33049 -0.00014995 0.35015 0.00015887 453.7318531448218 53.168 0.38919 53.168 52.938 53.327 0 37 17 3 0 0 0 0.79669 1 29540 29540 8.5933 0.68312 1 3332900 + 57450 29201 38300 39174 67071 67071 -0.007058967478087652 SAPSARFSWFF 11 Unmodified _SAPSARFSWFF_ 0 0 0 REV__ENST00000476113.1_1_20:62695297-62695453:+|nuORF REV__ENST00000476113.1_1_20:62695297-62695453:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8812255859375 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 63.451 1 63.451 62.951 63.951 0 0 0 0 0.93613 1 35393 35393 2.4348 0 1 + 57451 27589 38301 39175 67072 67072 -0.019437807453869027 SAPSARFSWFF 11 Unmodified _SAPSARFSWFF_ 0 0 0 REV__ENST00000476113.1_1_20:62695297-62695453:+|nuORF REV__ENST00000476113.1_1_20:62695297-62695453:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826599121094 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 50.109 1 49.717 49.217 50.217 -0.3923 0 0 0 0.93969 1 26973 26973 1.1098 0.41209 1 + 57452 27589 38301 39175 67073 67073 -0.019437807453869027 SAPTPLRPGF 10 Unmodified _SAPTPLRPGF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.267822265625 2 521.787641 1041.56073 0.66025 0.00034451 -0.22363 -0.00011669 0.43661 0.00022782 521.7874591277321 53.292 0.39772 53.292 52.982 53.38 0 27 17 2 0 0 0 0.23566 1 29369 29369 7.2892 0.56607 1 3830200 57453 8674 38302 39176 67074 67074 0.04161162680134112 SAPTTSTTSF 10 Unmodified _SAPTTSTTSF_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2349548339844 2 500.235104 998.455655 -0.47118 -0.0002357 1.8331 0.00091698 1.3619 0.00068128 500.2361813510665 33.547 0.47474 33.388 33.078 33.553 -0.15918 42 19 3 0 0 0 0.66569 1 17371 17371 6.7232 0.96273 1 1975300 57454 10523 38303 39177 67075 67075 -0.0436342330693833 SAPTVCSTKP 10 Unmodified _SAPTVCSTKP_ 0 0 0 REV__ENSG00000123594|ENST00000380622|ATXN3L REV__ENSG00000123594|ENST00000380622|ATXN3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2764587402344 2 495.749867 989.485181 0.15584 7.7256E-05 -2.461 -0.0012201 -2.3052 -0.0011428 495.747819205688 62.532 0.29504 62.532 62.432 62.727 0 21 14 2 0 0 0 0.22811 1 34937 34937 14.838 0 1 879890 + 57455 19395 38304 39178 67076 67076 -0.009981825624663543 SAPWWFWLSL 10 Unmodified _SAPWWFWLSL_ 0 0 0 ENST00000452340.7_1_14:77746025-77787024:-|nuORF;ENSG00000009830|ENST00000261534|POMT2 ENST00000452340.7_1_14:77746025-77787024:-|nuORF ENST00000452340.7_1_14:77746025-77787024:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.82666015625 2 646.826766 1291.63898 NaN NaN NaN NaN NaN NaN NaN 89.875 1 89.875 89.375 90.375 0 0 0 0 1.0024 1 49724 49724 0.40072 0 1 57456 407 38305 39179 67077 67077 0.004825952653618515 SAQESTPIM 9 Oxidation (M) _SAQESTPIM(Oxidation (M))_ SAQESTPIM(1) SAQESTPIM(61) 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2243957519531 2 490.223682 978.432811 -0.21598 -0.00010588 1.9324 0.0009473 1.7164 0.00084142 490.22506946952785 22.687 0.6192 22.687 22.283 22.903 0 69 31 3 0 0 0 0.022193 1 11554 11554 61.357 36.684 1 3037600 57457 8546;15522 38306 39180 67078 67078 1450 -0.05726765696044822 SAQESTPIM 9 Oxidation (M) _SAQESTPIM(Oxidation (M))_ SAQESTPIM(1) SAQESTPIM(60) 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2242736816406 2 490.223682 978.432811 0.51088 0.00025045 0.36406 0.00017847 0.87494 0.00042891 490.223986606578 26.681 0.37885 23.73 23.56 23.939 -2.9511 40 19 3 0 0 0 0.023481 1 14695 14695 60.074 24.03 1 11146000 57458 8546;15522 38306 39180 67079 67079 1450 -0.05726765696044822 SAQESTPIM 9 Unmodified _SAQESTPIM_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000576225.5_1_17:79058928-79084738:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2262268066406 2 482.226225 962.437897 0.8018 0.00038665 -0.98955 -0.00047719 -0.18776 -9.0541E-05 482.22584804094555 42.231 0.40027 37.546 37.364 37.764 -4.6846 53 25 3 0 0 0 0.06294 2 25547 25407;25547 41.84 17.166 1 30916000 57459 8546;15522 38306 39181 67080;67081 67081 -0.04482461833435991 SAQMIEENLN 10 Unmodified _SAQMIEENLN_ 0 0 0 ENST00000590930.5_1_10:101949357-101952352:-|nuORF;ENSG00000213341|ENST00000370397|CHUK ENST00000590930.5_1_10:101949357-101952352:-|nuORF;ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK MSMS AL20221201_MKP_PDAC_01 4 383.5120239257812 3 383.513256 1147.51794 NaN NaN NaN NaN NaN NaN NaN 22.358 1 19.623 19.123 20.123 -2.7348 0 0 0 0.94985 1 12022 12022 5.7834 0.48655 1 57460 10429;15694 38307 39182 67082 67082 -0.049920202302701 SAQRQWRQYEA 11 Unmodified _SAQRQWRQYEA_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 711.8485717773438 2 711.847281 1421.68001 0.10952 7.7965E-05 0.84896 0.00060433 0.95848 0.00068229 711.8470469232541 35.261 0.16705 35.288 35.186 35.353 0.027401 11 7 2 0 0 0 0.69708 1 18635 18635 4.5289 2.0304 1 1389400 + 57461 17191 38308 39183 67083 67083 -0.013962954330736466 SAQRQWRQYEA 11 Unmodified _SAQRQWRQYEA_ 0 0 0 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 REV__nc|ENSG00000040199|Q6ZVD8-3|PHLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 711.8491821289062 2 711.847281 1421.68001 0.25357 0.0001805 1.6256 0.0011572 1.8791 0.0013377 711.8487036317122 40.424 0.36421 35.895 35.718 36.082 -4.5294 61 22 4 0 0 0 0.33405 1 24203 24203 24.991 8.8419 1 20028000 + 57462 17191 38308 39183 67084 67084 -0.013962954330736466 SAQRVFCYT 9 Unmodified _SAQRVFCYT_ 0 0 0 ENST00000378509.8_1_7:133975980-133976244:-|nuORF ENST00000378509.8_1_7:133975980-133976244:-|nuORF ENST00000378509.8_1_7:133975980-133976244:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7559204101562 2 537.755484 1073.49641 1.0315 0.00055469 0.29884 0.0001607 1.3303 0.00071539 537.7556019702979 95.256 0.90777 89.08 88.573 89.481 -6.1757 100 51 2 0 0 0 0.36964 1 62954 62954 13.906 0.86358 1 46408000 57463 12547 38309 39184 67085 67085 -0.037393604683074955 SAQSVWTVRF 10 Unmodified _SAQSVWTVRF_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.208740234375 3 394.208495 1179.60366 -0.56512 -0.00022278 0.19066 7.5159E-05 -0.37447 -0.00014762 394.2086061285997 18.357 0.25836 18.357 18.27 18.529 0 92 37 3 0 0 0 0.67033 1 9188 9188 3.3196 0 1 5347600 + 57464 21044 38310 39185 67086 67086 0.021039327375547145 SAQSVWTVRF 10 Unmodified _SAQSVWTVRF_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2086791992188 3 394.208495 1179.60366 -0.53487 -0.00021085 0.29203 0.00011512 -0.24285 -9.5732E-05 394.20853693668005 18.212 0.28024 18.226 18.131 18.412 0.013865 127 52 3 0 0 0 0.69377 1 9181 9181 1.7423 0 1 4290700 + 57465 21044 38310 39185 67087 67087 0.021039327375547145 SAQTVRGQFNL 11 Unmodified _SAQTVRGQFNL_ 0 0 0 REV__nc|ENSG00000112041|O00294-2|TULP1 REV__nc|ENSG00000112041|O00294-2|TULP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5514221191406 3 407.550921 1219.63093 -0.67667 -0.00027578 0.29735 0.00012118 -0.37932 -0.00015459 407.5512418792999 27.094 0.16273 27.094 26.992 27.155 0 14 7 2 0 0 0 0.50515 1 13926 13926 12.856 0 1 1973500 + 57466 18782 38311 39186 67088 67088 0.029904162779757826 SARDKPASSMS 11 Unmodified _SARDKPASSMS_ 0 0 0 nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1 nc|ENSG00000124496|Q96PN7|TRERF1 nc|ENSG00000124496|Q96PN7|TRERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.77197265625 2 568.771862 1135.52917 0.34753 0.00019766 -0.34866 -0.00019831 -0.0011306 -6.4305E-07 568.7716223168394 48.934 0.86494 48.891 48.591 49.456 -0.04369 146 42 6 0 0 0 0.61059 1 26463 26463 10.8 0 1 794550000 57467 3792 38312 39187 67089 67089 -0.03317198136119259 SARFVGPTAL 10 Unmodified _SARFVGPTAL_ 0 0 0 ENST00000538906.5_2_16:31084239-31084572:-|nuORF ENST00000538906.5_2_16:31084239-31084572:-|nuORF ENST00000538906.5_2_16:31084239-31084572:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8139343261719 2 509.787641 1017.56073 0.61101 0.00031148 -0.4537 -0.00023129 0.1573 8.0191E-05 509.7873112521082 59.236 0.26215 59.182 59.011 59.273 -0.053062 29 12 3 0 0 0 0.48505 1 32308 32308 17.113 0 1 11533000 57468 15011 38313 39188 67090 67090 0.05265162680132107 SARGIWGP 8 Unmodified _SARGIWGP_ 0 0 0 REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5804748535156 2 422.22722 842.439886 0.60572 0.00025575 1.331 0.000562 1.9368 0.00081775 422.2277244912845 65.279 0.39544 65.279 65.035 65.431 7.6294E-06 26 18 2 0 0 0 8.7369 1 35845 35845 2.0598 0 1 3723100 + 57469 25592 38314 39189 67091 67091 0.012363797573243573 SARGIWGP 8 Unmodified _SARGIWGP_ 0 0 0 REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF REV__ENST00000330688.8_1_3:25469886-25470027:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.22722 842.439886 -0.043345 -1.8302E-05 2.8921 0.0012211 2.8488 0.0012028 422.2284516694095 65.427 0.3562 65.427 65.194 65.55 0 0.073903 0.00092303 NaN 2.0598 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 678510 + 57470 25592 38314 39189 0.012363797573243573 SARIEYDAY 9 Unmodified _SARIEYDAY_ 0 0 0 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7681274414062 2 544.256371 1086.49819 -0.35598 -0.00019375 -0.91241 -0.00049658 -1.2684 -0.00069033 544.2558652950116 33.581 0.3071 33.581 33.497 33.804 0 72 26 4 0 0 0 0.013609 3 17598 17590;17598;17711 70.332 42.436 1 49057000 57471 7147 38315 39190 67092;67093;67094 67093 -0.04160028178716857 SARIEYDAY 9 Unmodified _SARIEYDAY_ 0 0 0 ENSG00000164144|ENST00000353617|ARFIP1;nc|ENSG00000164144|P53367-2|ARFIP1;nc|ENSG00000164144|P53367-3|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2564086914062 2 544.256371 1086.49819 0.73418 0.00039958 -0.1952 -0.00010624 0.53899 0.00029335 544.2560700478076 38.233 0.43784 33.864 33.636 34.074 -4.3689 59 26 3 0 0 0 0.021948 2 22426 22426;22548 61.602 33.973 1 76778000 57472 7147 38315 39190 67095;67096 67095 -0.04160028178716857 SARKHDKPN 9 Unmodified _SARKHDKPN_ 0 0 0 REV__ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant REV__ARHGAP10|p.S715Lfs*6|1|0.17|ENSG00000071205|chr4:148063260-148063260|T/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.87353515625 3 351.524707 1051.55229 -0.46632 -0.00016392 -2.014 -0.00070798 -2.4803 -0.0008719 351.5239524774802 19.141 0.14015 19.141 19.06 19.2 0 12 8 2 0 0 0 0.2188 1 9549 9549 1.0715 0.20709 1 511450 + 57473 16727 38316 39191 67097 67097 0.028576087635201475 SARLSEDLY 9 Unmodified _SARLSEDLY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.264892578125 2 527.264196 1052.51384 0.4438 0.000234 1.6484 0.00086914 2.0922 0.0011031 527.2654645335904 37.229 0.19923 37.229 37.117 37.316 0 25 9 3 0 0 0 0.062454 1 19785 19785 41.956 18.807 1 4310300 57474 3740 38317 39192 67098 67098 -0.01031741661677188 SARPWGLV 8 Unmodified _SARPWGLV_ 0 0 0 REV__ENST00000372410.7_1_9:132816194-132837924:+|nuORF REV__ENST00000372410.7_1_9:132816194-132837924:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.9039611816406 2 443.250695 884.486836 1.2609 0.00055889 -0.25129 -0.00011139 1.0096 0.0004475 443.25062296113805 30.695 0.36531 27.198 26.956 27.321 -3.497 37 17 3 0 0 0 8.7369 1 17417 17417 18.146 13.39 1 45209000 + 57475 26111 38318 39193 67099 67099 0.03997239308478129 SARSTSPPT 9 Unmodified _SARSTSPPT_ 0 0 0 ENST00000469172.5_1_10:70091580-70091955:+|nuORF ENST00000469172.5_1_10:70091580-70091955:+|nuORF ENST00000469172.5_1_10:70091580-70091955:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.232177734375 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 17.648 1 17.648 17.148 18.148 0 0 0 0 0.83329 1 8713 8713 3.5965 0 1 57476 13826 38319 39194 67100 67100 -0.009365665216591879 SARYGNSSD 9 Unmodified _SARYGNSSD_ 0 0 0 nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4 nc|ENSG00000111783|Q33E94-3|RFX4 nc|ENSG00000111783|Q33E94-3|RFX4 MSMS AL20221201_MKP_PDAC_01 4 478.7086791992188 2 478.707045 955.399537 NaN NaN NaN NaN NaN NaN NaN 41.832 1 37.224 36.724 37.724 -4.6079 0 0 0 0.79771 1 25181 25181 6.2058 0.97511 1 57477 2826 38320 39195 67101 67101 -0.07994631423753162 SASAAELVY 9 Unmodified _SASAAELVY_ 0 0 0 ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4518432617188 1 910.451639 909.444362 -0.022095 -2.0116E-05 0.022737 2.0701E-05 0.00064238 5.8485E-07 910.4516115275115 47.032 0.31302 47.032 46.858 47.171 0 29 14 3 0 0 0 0.012148 2 25686 25686;25800 74.423 26.077 1 8749700 57478 7660 38321 39196 67102;67103 67102 -0.013982006104356515 SASAAELVY 9 Unmodified _SASAAELVY_ 0 0 0 ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7294921875 2 455.729458 909.444362 0.39555 0.00018026 0.28991 0.00013212 0.68546 0.00031239 455.72936302566467 47.01 0.29186 47.01 46.879 47.171 0 22 13 2 0 0 0 0.023164 1 25756 25756 60.39 18.295 1 7440600 57479 7660 38321 39196 67104 67104 -0.013982006104356515 SASAAELVY 9 Unmodified _SASAAELVY_ 0 0 0 ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.4526977539062 1 910.451639 909.444362 0.91294 0.00083119 -0.2049 -0.00018655 0.70804 0.00064464 910.4515345287423 54.125 0.35365 48.26 48.083 48.437 -5.8653 35 19 2 0 0 0 0.0090851 1 34302 34302 85.357 34.502 1 14642000 57480 7660 38321 39196 67105 67105 -0.013982006104356515 SASAAELVY 9 Unmodified _SASAAELVY_ 0 0 0 ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP ENSG00000167705|ENST00000301336|RILP MSMS AL20221201_MKP_PDAC_01 4 455.7301940917969 2 455.729458 909.444362 NaN NaN NaN NaN NaN NaN NaN 54.153 1 48.287 47.787 48.787 -5.8653 0 0 0 0.080768 1 34311 34311 48.346 14.243 1 57481 7660 38321 39196 67106 67106 -0.013982006104356515 SASAARLAPL 10 Unmodified _SASAARLAPL_ 0 0 0 ENST00000269593.4_1_17:38599756-38599807:+|nuORF ENST00000269593.4_1_17:38599756-38599807:+|nuORF ENST00000269593.4_1_17:38599756-38599807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.781494140625 2 478.779816 955.545079 0.75989 0.00036382 0.91172 0.00043652 1.6716 0.00080033 478.78025757591234 40.658 0.22696 40.355 40.234 40.461 -0.30304 16 10 2 0 0 0 0.28276 1 21501 21501 28.495 2.2264 1 1692700 57482 11362 38322 39197 67107 67107 0.06552876163061683 SASAEVDSTL 10 Unmodified _SASAEVDSTL_ 0 0 0 REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.23291015625 2 490.232561 978.45057 0.31709 0.00015545 3.4515 0.001692 3.7686 0.0018475 490.23318533568465 58.2 0.31082 58.2 58.103 58.414 0 25 11 3 0 0 0 0.42068 1 32395 32395 20.454 3.5113 1 2260000 + 57483 27943 38323 39198 67108 67108 -0.03951727169555852 SASAEVDSTL 10 Unmodified _SASAEVDSTL_ 0 0 0 REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF REV__ENST00000494792.1_1_10:126305830-126306172:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 490.232561 978.45057 0.31709 0.00015545 3.4515 0.001692 3.7686 0.0018475 490.23318533568465 58.2 0.31082 58.2 58.103 58.414 0 0 0 NaN 20.454 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2260000 + 57484 27943 38323 39198 -0.03951727169555852 SASAVQLIL 9 Unmodified _SASAVQLIL_ 0 0 0 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 ENSG00000235863|ENST00000451237|B3GALT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.271484375 2 451.271293 900.528032 NaN NaN NaN NaN NaN NaN NaN 77.266 1 76.783 76.283 77.283 -0.4826 0 0 0 0.50124 1 42298 42298 15.847 3.3156 1 57485 10641 38324 39199 67109 67109 0.07378955557294375 SASCYSPSCY 10 Unmodified _SASCYSPSCY_ 0 0 0 nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 nc|ENSG00000002746|Q76N89-2|HECW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.4656066894531 3 356.465137 1066.37358 0.24902 8.8767E-05 1.5617 0.00055668 1.8107 0.00064545 356.46572446655597 39.214 0.22531 39.214 39.096 39.321 0 18 10 2 0 0 0 0.60623 1 21016 21016 6.1918 0 1 3191500 57486 265 38325 39200 67110 67110 -0.1569498498190569 SASDTPVIF 9 Unmodified _SASDTPVIF_ 0 0 0 nc|ENSG00000115295|Q8N3C7-3|CLIP4;nc|ENSG00000115295|Q8N3C7-2|CLIP4;ENSG00000115295|ENST00000320081|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 nc|ENSG00000115295|Q8N3C7-3|CLIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.4669799804688 1 936.467289 935.460012 0.21011 0.00019676 -0.36335 -0.00034026 -0.15324 -0.0001435 936.46663119489 63.2 0.24195 63.2 63.053 63.295 0 16 9 2 0 0 0 0.06187 1 35233 35233 42.095 7.9072 1 974410 57487 3106 38326 39201 67111 67111 -0.010299140933852868 SASEAATLF 9 Unmodified _SASEAATLF_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1;nc|ENSG00000101187|Q96BD0-2|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.4357299804688 1 896.435989 895.428712 -0.067571 -6.0573E-05 1.1935 0.0010699 1.126 0.0010093 896.4368705555133 55.067 0.22601 55.067 54.944 55.17 0 12 9 2 0 0 0 0.2143 1 30586 30586 21.747 0 1 698790 57488 1925 38327 39202 67112 67112 -0.023184871274679608 SASESILEL 9 Unmodified _SASESILEL_ 0 0 0 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.4854125976562 1 948.488418 947.481142 -0.27454 -0.00026039 0.82987 0.00078712 0.55533 0.00052673 948.4888191795244 68.54 0.28537 68.54 68.371 68.656 0 21 12 2 0 0 0 0.095405 1 38172 38172 34.102 5.6156 1 1082600 57489 6122 38328 39203 67113 67113 0.005300512154803982 SASEVTSTVY 10 Unmodified _SASEVTSTVY_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2479248046875 2 522.248212 1042.48187 -0.26626 -0.00013905 0.97749 0.00051049 0.71123 0.00037144 522.2478655813163 34.454 0.34502 34.454 34.269 34.614 0 41 17 3 0 0 0 0.063761 1 18211 18211 54.774 34.32 1 8097100 57490 5324 38329 39204 67114 67114 -0.037671541354711735 SASGTYTLY 9 Unmodified _SASGTYTLY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.44775390625 1 962.446553 961.439277 -0.26423 -0.00025431 0.68201 0.0006564 0.41777 0.00040208 962.4474237939154 44.528 0.17295 44.528 44.437 44.61 0 13 8 2 0 0 0 0.30562 1 24216 24216 16.942 5.302 1 6455000 57491 3388 38330 39205 67115 67115 -0.0429850447304716 SASGVLFSL 9 Unmodified _SASGVLFSL_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 880.4758911132812 1 880.47746 879.470183 -0.10591 -9.3255E-05 1.2616 0.0011108 1.1557 0.0010176 880.4782286503697 83.251 0.24754 82.753 82.642 82.89 -0.49751 12 9 2 0 0 0 0.16226 1 45570 45570 26.884 0 1 621130 57492 16480 38331 39206 67116 67116 0.025626936318417393 SASIPLPVA 9 Unmodified _SASIPLPVA_ 0 0 0 ENST00000469381.1_1_16:85696561-85697128:+|nuORF ENST00000469381.1_1_16:85696561-85697128:+|nuORF ENST00000469381.1_1_16:85696561-85697128:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.7544250488281 2 427.752736 853.490919 0.35004 0.00014973 0.62188 0.00026601 0.97192 0.00041574 427.7530185743932 23.695 0.42808 20.868 20.613 21.041 -2.8273 41 25 2 0 0 0 0.14602 1 12912 12912 28.487 0 1 4711900 57493 13832 38332 39207 67117 67117 0.05831284011514981 SASKRRKKV 9 Unmodified _SASKRRKKV_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MSMS AL20221201_MKP_PDAC_01 4 530.3433837890625 2 530.340907 1058.66726 NaN NaN NaN NaN NaN NaN NaN 107.6 1 101.42 100.92 101.92 -6.1757 0 0 0 0.85798 1 71956 71956 0.52476 0 1 57494 9717 38333 39208 67118 67118 0.14027337965330844 SASNPSPQY 9 Unmodified _SASNPSPQY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7146911621094 2 475.714339 949.414125 -0.18566 -8.832E-05 0.51867 0.00024674 0.33301 0.00015842 475.7144380252001 22.043 0.39847 22.043 21.866 22.264 0 52 33 2 0 0 0 0.039985 2 11270 11166;11270 49.933 23.592 1 1981700 57495 2314 38334 39209 67119;67120 67120 -0.06260559275619926 SASNPSPQY 9 Unmodified _SASNPSPQY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4238891601562 1 950.421401 949.414125 -0.76808 -0.00073 0.71651 0.00068099 -0.051568 -4.9011E-05 950.4213262134165 22.056 0.26825 22.056 21.976 22.245 0 22 16 2 0 0 0 0.47846 1 11216 11216 8.7454 3.0136 1 802970 57496 2314 38334 39209 67121 67121 -0.06260559275619926 SASNPSPQY 9 Unmodified _SASNPSPQY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7149963378906 2 475.714339 949.414125 -0.12279 -5.8411E-05 0.438 0.00020836 0.31521 0.00014995 475.714533909219 25.547 0.26555 22.664 22.482 22.748 -2.8831 25 14 2 0 0 0 0.040683 1 13969 13969 49.554 23.213 1 4710200 57497 2314 38334 39209 67122 67122 -0.06260559275619926 SASNTAAEF 9 Unmodified _SASNTAAEF_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2006225585938 2 449.201064 896.387576 -0.36719 -0.00016494 -4.177 -0.0018763 -4.5442 -0.0020412 449.1984512643023 30.073 0.40992 30.073 29.833 30.243 0 31 19 2 0 0 0 0.32871 1 15539 15539 15.847 2.3393 1 2944600 57498 8162 38335 39210 67123 67123 -0.06476248166950427 SASNTAAEF 9 Unmodified _SASNTAAEF_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2011413574219 2 449.201064 896.387576 1.061 0.00047661 -0.24508 -0.00011009 0.81594 0.00036652 449.20083984864607 34.741 0.39626 30.646 30.473 30.869 -4.0951 39 23 2 0 0 0 0.07916 1 20081 20081 37.974 13.953 1 6596000 57499 8162 38335 39210 67124 67124 -0.06476248166950427 SASPHAAYY 9 Unmodified _SASPHAAYY_ 0 0 0 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7190856933594 2 483.719424 965.424296 NaN NaN NaN NaN NaN NaN NaN 22.983 1 22.983 22.483 23.483 0 0 0 0 0.7453 1 11704 11704 7.9102 2.1497 1 57500 5840 38336 39211 67125 67125 -0.05979951550398255 SASPVSDVSY 10 Unmodified _SASPVSDVSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2351684570312 2 506.235104 1010.45566 0.59451 0.00030096 -0.46094 -0.00023334 0.13357 6.7616E-05 506.23486880477316 39.213 0.45196 39.213 38.929 39.381 0 73 21 5 0 0 0 0.02987 1 21024 21024 68.081 9.4019 1 74826000 57501 4346 38337 39212 67126 67126 -0.04915423306943012 SASPVSDVSY 10 Unmodified _SASPVSDVSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2352905273438 2 506.235104 1010.45566 0.47129 0.00023858 0.42129 0.00021327 0.89258 0.00045186 506.2352868162518 46.25 0.48621 41.295 40.999 41.485 -4.9549 95 32 4 0 0 0 0.043729 1 28530 28530 61.357 9.0891 1 210320000 57502 4346 38337 39212 67127 67127 -0.04915423306943012 SASPVSDVSY 10 Unmodified _SASPVSDVSY_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.235104 1010.45566 0.39046 0.00019766 0.35128 0.00017783 0.74174 0.00037549 506.2358262107968 39.217 0.21712 39.229 39.106 39.323 0.011456 0.0080831 0.00070125 NaN 68.081 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 585960 57503 4346 38337 39212 -0.04915423306943012 SASRLVLNY 9 Unmodified _SASRLVLNY_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2864379882812 2 511.785099 1021.55564 -0.13189 -6.75E-05 0.8551 0.00043763 0.72321 0.00037013 511.7856252962798 45.532 0.18404 45.208 45.103 45.287 -0.32425 15 9 2 0 0 0 0.0094097 1 24312 24312 82.529 36.508 1 10049000 57504 8437 38338 39213 67128 67128 0.04572858817505221 SASRLVLNY 9 Unmodified _SASRLVLNY_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7857055664062 2 511.785099 1021.55564 0.31063 0.00015898 0.15645 8.0071E-05 0.46709 0.00023905 511.78546580061163 45.224 0.10959 45.196 45.153 45.263 -0.028011 7 5 2 0 0 0 0.012668 1 24301 24301 72.968 42.331 1 7011400 57505 8437 38338 39213 67129 67129 0.04572858817505221 SASRLVLNY 9 Unmodified _SASRLVLNY_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7855529785156 2 511.785099 1021.55564 0.91694 0.00046928 -1.753 -0.00089718 -0.83611 -0.00042791 511.78479502520395 50.525 0.35823 44.986 44.741 45.1 -5.5391 39 22 2 0 0 0 0.01958 1 31653 31653 63.961 39.94 1 43161000 57506 8437 38338 39213 67130 67130 0.04572858817505221 SASSNYQQTTI 11 Unmodified _SASSNYQQTTI_ 0 0 0 NIPBL|p.P137S|1|0.16|ENSG00000164190|chr5:36961534-36961534|C/T|missense_variant NIPBL|p.P137S|1|0.16|ENSG00000164190|chr5:36961534-36961534|C/T|missense_variant NIPBL|p.P137S|1|0.16|ENSG00000164190|chr5:36961534-36961534|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2794799804688 2 600.280574 1198.5466 NaN NaN NaN NaN NaN NaN NaN 64.433 1 63.948 63.448 64.448 -0.48512 0 0 0 0.85601 1 35154 35154 9.3831 2.66 1 57507 16671 38339 39214 67131 67131 -0.0447357932948762 SASTTTLRY 9 Unmodified _SASTTTLRY_ 0 0 0 ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2590942382812 2 500.258914 998.503274 -0.4474 -0.00022381 0.12281 6.1435E-05 -0.32459 -0.00016238 500.25900076336586 27.995 0.26525 27.995 27.825 28.09 0 36 16 3 0 0 0 0.012668 1 14420 14420 72.968 34.353 1 13830000 57508 625 38340 39215 67132 67132 0.003962756839086978 SASTTTLRY 9 Unmodified _SASTTTLRY_ 0 0 0 ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2595520019531 2 500.258914 998.503274 0.89478 0.00044762 0.29912 0.00014964 1.1939 0.00059726 500.2591011639841 31.248 0.32052 27.552 27.344 27.664 -3.6958 24 16 2 0 0 0 0.0087807 2 17744 17620;17744 106.94 50.763 1 55124000 57509 625 38340 39215 67133;67134 67134 0.003962756839086978 SASTVLLLLL 10 Unmodified _SASTVLLLLL_ 0 0 0 REV__ENSG00000183396|ENST00000330862|TMEM89 REV__ENSG00000183396|ENST00000330862|TMEM89 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3333740234375 2 515.33135 1028.64815 1.5221 0.00078438 0.499 0.00025715 2.0211 0.0010415 515.3318654627394 106.23 0.9032 100.05 99.702 100.61 -6.1757 266 148 3 0 0 0 0.72247 1 71391 71391 0.40072 0 1 8449000 + 57510 23344 38341 39216 67135 67135 0.13496943831046337 SASVSAISYHL 11 Unmodified _SASVSAISYHL_ 0 0 0 REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY REV__nc|ENSG00000133943|Q7Z3D6-5|DGLUCY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.790771484375 2 567.793121 1133.57169 -0.1114 -6.3252E-05 -3.4681 -0.0019692 -3.5795 -0.0020324 567.7913653273054 24.097 0.14334 24.097 23.995 24.138 0 9 6 2 0 0 0 0.39949 1 12302 12302 21.537 1.1224 1 574610 + 57511 19941 38342 39217 67136 67136 0.010245202637634065 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4837036132812 1 974.482939 973.475663 -0.011287 -1.0999E-05 0.79067 0.00077049 0.77938 0.00075949 974.4835719283186 56.554 0.34471 56.554 56.361 56.705 0 36 14 3 0 0 0 0.012148 2 31493 31394;31493 74.423 51.274 1 7380700 57512 10665 38343 39218 67137;67138 67138 -0.012136275763282356 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7454833984375 2 487.745108 973.475663 0.077894 3.7992E-05 0.47839 0.00023333 0.55628 0.00027132 487.7451814312738 56.571 0.30166 56.571 56.383 56.685 0 37 12 4 0 0 0 0.026094 1 31448 31448 57.471 35.725 1 6121500 57513 10665 38343 39218 67139 67139 -0.012136275763282356 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.4825439453125 1 974.482939 973.475663 0.31711 0.00030902 -0.46655 -0.00045464 -0.14944 -0.00014562 974.4824081500615 57.122 0.38346 56.636 56.479 56.862 -0.48554 46 17 4 0 0 0 0.0090851 2 31101 30995;31101 85.357 51.254 1 15802000 57514 10665 38343 39218 67140;67141 67141 -0.012136275763282356 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7447204589844 2 487.745108 973.475663 0.56236 0.00027429 -0.86136 -0.00042013 -0.299 -0.00014584 487.74457933680105 57.154 0.34137 56.664 56.474 56.816 -0.48974 38 15 3 0 0 0 0.038285 1 31070 31070 50.855 31.416 1 5943600 57515 10665 38343 39218 67142 67142 -0.012136275763282356 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.4939575195312 1 974.482939 973.475663 1.0849 0.0010572 0.81679 0.00079595 1.9017 0.0018532 974.4837928521848 64.484 0.41955 58.308 58.09 58.509 -6.1757 53 22 3 0 0 0 0.0082281 4 41660 41649;41660;41672;41804 100.37 60.414 1 54614000 57516 10665 38343 39218 67143;67144;67145;67146 67144 -0.012136275763282356 SASVVFTTY 9 Unmodified _SASVVFTTY_ 0 0 0 nc|ENSG00000239857|Q7L5D6-2|GET4;ENSG00000239857|ENST00000265857|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 nc|ENSG00000239857|Q7L5D6-2|GET4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7438659667969 2 487.745108 973.475663 1.3876 0.00067681 -1.6814 -0.00082012 -0.29381 -0.00014331 487.7438028957062 64.495 0.38985 58.319 58.167 58.557 -6.1757 38 21 2 0 0 0 0.06187 1 41782 41782 42.095 20.348 1 38500000 57517 10665 38343 39218 67147 67147 -0.012136275763282356 SASWCWAY 8 Unmodified _SASWCWAY_ 0 0 0 ENST00000368226.8_1_6:128505662-128540128:-|nuORF ENST00000368226.8_1_6:128505662-128540128:-|nuORF ENST00000368226.8_1_6:128505662-128540128:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.1982116699219 2 487.19727 972.379988 0.28835 0.00014048 1.1262 0.0005487 1.4146 0.00068918 487.1977015440627 58.412 0.51493 58.412 58.233 58.748 0 39 20 2 0 0 0 0.78849 1 32635 32635 9.3474 0.75416 1 1381600 57518 12263 38344 39219 67148 67148 -0.10730678968229768 SATAVAQLY 9 Unmodified _SATAVAQLY_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 923.4837646484375 1 923.483273 922.475997 0.59999 0.00055408 0.21483 0.00019839 0.81482 0.00075248 923.4833430433092 47.473 0.375 47.473 47.29 47.665 0 40 16 3 0 0 0 0.0067112 2 26037 25935;26037 112.59 34.609 1 18384000 57519 9091;16558 38345 39220 67149;67150 67150 0.011657921435244134 SATAVAQLY 9 Unmodified _SATAVAQLY_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2461547851562 2 462.245275 922.475997 0.96877 0.00044781 -0.15991 -7.392E-05 0.80885 0.00037389 462.2452293874404 47.479 0.39629 47.479 47.29 47.686 0 56 17 4 0 0 0 0.0090851 2 25941 25941;26051 85.357 31.781 1 37122000 57520 9091;16558 38345 39220 67151;67152 67151 0.011657921435244134 SATAVAQLY 9 Unmodified _SATAVAQLY_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.2461853027344 2 462.245275 922.475997 0.46005 0.00021266 0.46286 0.00021396 0.92292 0.00042661 462.2454317819294 47.793 0.18773 47.441 47.328 47.516 -0.3526 13 8 2 0 0 0 0.023164 1 25647 25647 60.39 28.273 1 2376800 57521 9091;16558 38345 39220 67153 67153 0.011657921435244134 SATAVAQLY 9 Unmodified _SATAVAQLY_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 923.4835205078125 1 923.483273 922.475997 0.77066 0.00071169 0.2691 0.00024851 1.0398 0.0009602 923.4833474148572 54.793 0.4676 48.928 48.682 49.15 -5.8653 62 28 3 0 0 0 0.008678 3 34809 34672;34809;34939 88.904 22.06 1 49023000 57522 9091;16558 38345 39220 67154;67155;67156 67155 0.011657921435244134 SATAVAQLY 9 Unmodified _SATAVAQLY_ 0 0 0 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;ENSG00000182831|ENST00000327827|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1;nc|ENSG00000230707|A0A7P0TBJ1|HAPSTR2 nc|ENSG00000182831|Q14CZ0-2|HAPSTR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 462.287841796875 2 462.245275 922.475997 0.82992 0.00038363 0.33834 0.0001564 1.1683 0.00054002 462.2455765721451 54.793 0.45183 48.927 48.682 49.134 -5.8653 68 27 3 0 0 0 0.097209 1 34737 34737 38.151 17.28 1 48398000 57523 9091;16558 38345 39220 67157 67157 0.011657921435244134 SATDVLFLL 9 Unmodified _SATDVLFLL_ 0 0 0 REV__B3GNT3|p.G148D|1|0.19|ENSG00000179913|chr19:17808250-17808250|G/A|missense_variant REV__B3GNT3|p.G148D|1|0.19|ENSG00000179913|chr19:17808250-17808250|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7786560058594 2 489.778951 977.543348 0.69281 0.00033932 0.066183 3.2415E-05 0.75899 0.00037174 489.778592888215 82.999 0.48315 82.501 82.306 82.789 -0.49751 53 19 4 0 0 0 0.2001 1 45391 45391 23.148 5.0134 1 4537200 + 57524 16741 38346 39221 67158 67158 0.053678223544807224 SATDVLFLL 9 Unmodified _SATDVLFLL_ 0 0 0 REV__B3GNT3|p.G148D|1|0.19|ENSG00000179913|chr19:17808250-17808250|G/A|missense_variant REV__B3GNT3|p.G148D|1|0.19|ENSG00000179913|chr19:17808250-17808250|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.5531005859375 1 978.550625 977.543348 0.71168 0.00069642 0.43329 0.000424 1.145 0.0011204 978.5506902576014 91.413 0.46197 85.237 85.028 85.49 -6.1757 45 25 2 0 0 0 0.06187 1 60348 60348 42.095 6.0504 1 11751000 + 57525 16741 38346 39221 67159 67159 0.053678223544807224 SATELFEAY 9 Unmodified _SATELFEAY_ 0 0 0 ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7400512695312 2 515.740022 1029.46549 0.28401 0.00014648 -0.20905 -0.00010782 0.074961 3.866E-05 515.7399881792402 63.441 0.51332 63.441 63.219 63.732 0 62 23 3 0 0 0 0.023164 2 35441 35333;35441 60.39 31.903 1 12817000 57526 8290 38347 39222 67160;67161 67161 -0.048062353015666304 SATELFEAY 9 Unmodified _SATELFEAY_ 0 0 0 ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L ENSG00000173145|ENST00000371361|NOC3L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 515.8013305664062 2 515.740022 1029.46549 1.0102 0.000521 0.31074 0.00016026 1.3209 0.00068126 515.7401014422139 70.776 0.37973 64.601 64.427 64.806 -6.1757 28 19 2 0 0 0 0.11012 1 46312 46312 36.044 14.298 1 16653000 57527 8290 38347 39222 67162 67162 -0.048062353015666304 SATHLNISF 9 Unmodified _SATHLNISF_ 0 0 0 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 ENSG00000104866|ENST00000221462|PPP1R37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2559509277344 2 495.256174 988.497795 0.19348 9.582E-05 -0.97128 -0.00048103 -0.7778 -0.00038521 495.2558004198744 54.417 0.28158 53.95 53.803 54.084 -0.46664 27 14 3 0 0 0 0.0082485 1 29477 29477 96.285 41.511 1 5598000 57528 2245 38348 39223 67163 67163 0.0030859689209137287 SATIGPQSQG 10 Unmodified _SATIGPQSQG_ 0 0 0 REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1 REV__nc|ENSG00000175287|Q5SRE7-3|PHYHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2366027832031 2 473.235439 944.456324 0.6308 0.00029852 1.6266 0.00076975 2.2574 0.0010683 473.2365662576027 47.474 0.37315 47.474 47.25 47.623 0 24 16 2 0 0 0 0.46077 1 26031 26031 18.373 0 1 2846700 + 57529 29795 38349 39224 67164 67164 -0.01812583867229023 SATKDFSVF 9 Unmodified _SATKDFSVF_ 0 0 0 ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF;ENST00000512669.1_1_4:1836565-1841051:-|nuORF;nc|ENSG00000168924|O95202-2|LETM1;ENST00000505551.5_1_4:1836565-1844755:-|nuORF;nc|ENSG00000168924|O95202-3|LETM1;ENST00000466175.5_1_4:1836565-1857677:-|nuORF ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2499694824219 2 501.250557 1000.48656 -0.11972 -6.0012E-05 0.43734 0.00021922 0.31762 0.00015921 501.2506591922769 51.115 0.28016 50.702 50.576 50.856 -0.41351 21 13 2 0 0 0 0.094149 1 27554 27554 34.402 12.655 1 1829600 57530 7816 38350 39225 67165 67165 -0.013662252020367305 SATKDFSVF 9 Unmodified _SATKDFSVF_ 0 0 0 ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF;ENST00000512669.1_1_4:1836565-1841051:-|nuORF;nc|ENSG00000168924|O95202-2|LETM1;ENST00000505551.5_1_4:1836565-1844755:-|nuORF;nc|ENSG00000168924|O95202-3|LETM1;ENST00000466175.5_1_4:1836565-1857677:-|nuORF ENSG00000168924|ENST00000302787|LETM1 ENSG00000168924|ENST00000302787|LETM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 501.250557 1000.48656 0.55354 0.00027746 -1.055 -0.00052884 -0.5015 -0.00025138 501.25012796822665 50.658 0.14408 50.658 50.54 50.685 0 -0.021714 -0.0012762 NaN 34.402 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1867700 57531 7816 38350 39225 -0.013662252020367305 SATLFVVSL 9 Unmodified _SATLFVVSL_ 0 0 0 REV__ENST00000504366.5_1_5:140057253-140057307:-|nuORF REV__ENST00000504366.5_1_5:140057253-140057307:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 936.5439453125 1 936.54006 935.532783 2.0816 0.0019495 -0.55734 -0.00052197 1.5243 0.0014276 936.5392015561953 93.223 0.27596 93.246 93.078 93.354 0.02298 14 9 2 0 0 0 0.042911 1 51861 51861 48.346 6.2513 1 2444500 + 57532 28054 38351 39226 67166 67166 0.06243839700039189 SATLFVVSL 9 Unmodified _SATLFVVSL_ 0 0 0 REV__ENST00000504366.5_1_5:140057253-140057307:-|nuORF REV__ENST00000504366.5_1_5:140057253-140057307:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 936.54006 935.532783 2.0816 0.0019495 -0.55734 -0.00052197 1.5243 0.0014276 936.5392015561953 93.223 0.27596 93.246 93.078 93.354 0.02298 -0.02586 -0.00018765 NaN 48.346 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2444500 + 57533 28054 38351 39226 0.06243839700039189 SATLLNPNYI 10 Unmodified _SATLLNPNYI_ 0 0 0 REV__ENSG00000173218|ENST00000355485|VANGL1 REV__ENSG00000173218|ENST00000355485|VANGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1983947753906 3 369.201118 1104.58152 0.76376 0.00028198 -3.0038 -0.001109 -2.2401 -0.00082703 369.19850241132605 15.324 0.29407 12.797 12.719 13.013 -2.5273 100 62 3 0 0 0 0.52659 1 7871 7871 14.957 0 1 4472300 + 57534 22712 38352 39227 67167 67167 0.03341708269135779 SATLVDEVF 9 Unmodified _SATLVDEVF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.4921875 1 980.493504 979.486227 0.50919 0.00049926 -1.1049 -0.0010833 -0.59566 -0.00058404 980.4924305016588 73.362 0.39599 73.362 73.195 73.591 0 55 21 3 0 0 0 0.010877 3 40883 40774;40792;40883 77.984 41.94 1 12808000 57535 3336 38353 39228 67168;67169;67170 67170 -0.004336449219067617 SATLVDEVF 9 Unmodified _SATLVDEVF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7503967285156 2 490.75039 979.486227 0.60619 0.00029749 -0.96215 -0.00047217 -0.35595 -0.00017468 490.74994056072615 73.367 0.37229 73.367 73.174 73.546 0 51 20 3 0 0 0 0.010877 2 40803 40803;40911 77.984 41.94 1 10263000 57536 3336 38353 39228 67171;67172 67171 -0.004336449219067617 SATLVDEVF 9 Unmodified _SATLVDEVF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.4954833984375 1 980.493504 979.486227 1.0524 0.0010318 -0.19675 -0.00019291 0.85561 0.00083892 980.4930266587965 81.46 0.47194 75.284 75.06 75.532 -6.1757 50 26 2 0 0 0 0.012148 3 53358 53358;53480;53617 74.423 23.568 1 17407000 57537 3336 38353 39228 67173;67174;67175 67173 -0.004336449219067617 SATLVDEVF 9 Unmodified _SATLVDEVF_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7506103515625 2 490.75039 979.486227 1.1221 0.00055068 -1.5052 -0.0007387 -0.38313 -0.00018802 490.75026357536876 81.434 0.47194 75.259 75.06 75.532 -6.1757 34 26 2 0 0 0 0.023164 1 53427 53427 60.39 37.241 1 18998000 57538 3336 38353 39228 67176 67176 -0.004336449219067617 SATRPRSP 8 Unmodified _SATRPRSP_ 0 0 0 REV__ENST00000397062.7_2_2:178129303-178129645:-|nuORF REV__ENST00000397062.7_2_2:178129303-178129645:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2408752441406 2 436.240858 870.467164 0.47121 0.00020556 0.34269 0.00014949 0.81389 0.00035505 436.24100426747714 26.383 0.29781 23.432 23.281 23.579 -2.9511 36 15 3 0 0 0 0.50673 1 14492 14492 34.102 0 1 22061000 + 57539 26526 38354 39229 67177 67177 0.026748632977160014 SATYIAEEY 9 Unmodified _SATYIAEEY_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7378540039062 2 523.73748 1045.46041 0.2677 0.0001402 -1.2416 -0.00065025 -0.97385 -0.00051004 523.7369328369617 43.68 0.25754 43.68 43.526 43.784 0 19 12 2 0 0 0 0.038285 1 23716 23716 50.855 27.707 1 45747000 57540 2860 38355 39230 67178 67178 -0.06050539164175461 SATYIAEEY 9 Unmodified _SATYIAEEY_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1047.231201171875 1 1046.46768 1045.46041 0.85891 0.00089883 -0.62268 -0.00065162 0.23623 0.00024721 1046.4671031507294 50.745 0.39023 45.096 44.926 45.316 -5.649 37 23 2 0 0 0 0.0088174 1 31811 31811 103.75 3.3768 1 34690000 57541 2860 38355 39230 67179 67179 -0.06050539164175461 SATYIAEEY 9 Unmodified _SATYIAEEY_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7376098632812 2 523.73748 1045.46041 1.1265 0.00058998 -0.7103 -0.00037201 0.41619 0.00021797 523.7371592945556 50.78 0.40873 45.131 44.907 45.316 -5.649 46 24 2 0 0 0 0.038285 2 31820 31820;31958 50.855 27.707 1 76376000 57542 2860 38355 39230 67180;67181 67180 -0.06050539164175461 SAVDGVHLHTF 11 Unmodified _SAVDGVHLHTF_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2024230957031 3 394.86825 1181.58292 0.47776 0.00018865 -0.086331 -3.4089E-05 0.39143 0.00015456 394.8683156840325 42.487 0.18165 42.487 42.362 42.544 0 17 8 3 0 0 0 0.12183 1 23008 23008 31.636 24.599 1 3027600 57543 5800 38356 39231 67182 67182 -0.0006065764212053182 SAVDGVHLHTF 11 Unmodified _SAVDGVHLHTF_ 0 0 0 nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 nc|ENSG00000146833|Q9C037|TRIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8684997558594 3 394.86825 1181.58292 1.6765 0.00066199 1.8054 0.0007129 3.4819 0.0013749 395.20352862719136 47.785 0.20598 42.551 42.435 42.641 -5.2339 28 12 3 0 0 0 0.28407 1 29675 29675 27.088 12.683 1 11235000 57544 5800 38356 39231 67183 67183 -0.0006065764212053182 SAVDLPVTL 9 Unmodified _SAVDLPVTL_ 0 0 0 ENSG00000185246|ENST00000355765|PRPF39;ENST00000556782.5_1_14:45553435-45564778:+|nuORF ENSG00000185246|ENST00000355765|PRPF39 ENSG00000185246|ENST00000355765|PRPF39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.5186157226562 1 914.519325 913.512048 0.05864 5.3627E-05 1.3816 0.0012635 1.4402 0.0013171 914.5198092665859 77.2 0.28223 77.2 77.057 77.339 0 23 12 3 0 0 0 0.047196 2 42959 42866;42959 46.021 6.0636 1 1423800 57545 9350 38357 39232 67184;67185 67185 0.05183249320384675 SAVDLPVTL 9 Unmodified _SAVDLPVTL_ 0 0 0 ENSG00000185246|ENST00000355765|PRPF39;ENST00000556782.5_1_14:45553435-45564778:+|nuORF ENSG00000185246|ENST00000355765|PRPF39 ENSG00000185246|ENST00000355765|PRPF39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7636413574219 2 457.7633 913.512048 0.5164 0.00023639 0.60885 0.00027871 1.1252 0.0005151 457.76355889352885 77.218 0.27094 77.218 77.068 77.339 0 25 11 3 0 0 0 0.32871 1 42981 42981 15.847 3.3156 1 1415600 57546 9350 38357 39232 67186 67186 0.05183249320384675 SAVDLSTCF 9 Carbamidomethyl (C) _SAVDLSTC(Carbamidomethyl (C))F_ SAVDLSTC(1)F SAVDLSTC(64)F 0 1 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2265625 2 500.226225 998.437897 0.64589 0.00032309 0.35895 0.00017956 1.0048 0.00050265 500.22641506544915 66.578 0.51135 60.403 60.117 60.628 -6.1757 73 28 3 0 0 0 0.019303 3 43309 43187;43309;43445 64.236 33.6 1 100070000 57547 1623 38358 39233 67187;67188;67189 67188 155 -0.06138461833461406 SAVDLSTCF 9 Carbamidomethyl (C) _SAVDLSTC(Carbamidomethyl (C))F_ SAVDLSTC(1)F SAVDLSTC(89)F 0 1 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.4441528320312 1 999.445173 998.437897 0.37167 0.00037147 -0.57297 -0.00057265 -0.20129 -0.00020118 999.4446690073771 66.509 0.42193 60.333 60.177 60.599 -6.1757 49 23 3 0 0 0 0.008678 2 43196 43196;43319 88.904 45.045 1 23586000 57548 1623 38358 39233 67190;67191 67190 155 -0.06138461833461406 SAVDMMELY 9 Unmodified _SAVDMMELY_ 0 0 0 ENST00000572869.1_1_16:25162908-25186269:+|nuORF;ENSG00000205629|ENST00000399069|LCMT1;nc|ENSG00000205629|Q9UIC8-2|LCMT1;nc|ENSG00000205629|Q9UIC8-3|LCMT1 ENST00000572869.1_1_16:25162908-25186269:+|nuORF ENST00000572869.1_1_16:25162908-25186269:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 529.728759765625 2 529.730286 1057.44602 NaN NaN NaN NaN NaN NaN NaN 80.366 1 74.191 73.691 74.691 -6.1757 0 0 0 0.071041 1 52728 52728 50.855 23.971 1 57549 10373 38359 39234 67192 67192 -0.08040650908310454 SAVDRRAP 8 Unmodified _SAVDRRAP_ 0 0 0 nc|ENSG00000161911|Q86YW5-2|TREML1;ENSG00000161911|ENST00000426005|TREML1 nc|ENSG00000161911|Q86YW5-2|TREML1 nc|ENSG00000161911|Q86YW5-2|TREML1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.241455078125 2 436.240858 870.467164 0.47121 0.00020556 0.34269 0.00014949 0.81389 0.00035505 436.24100426747714 26.383 0.29781 23.432 23.281 23.579 -2.9511 36 15 3 0 0 0 0.64853 1 14619 14619 21.747 0 1 22061000 57550 6816 38360 39235 67193 67193 0.026748632977046327 SAVDVHINM 9 Oxidation (M) _SAVDVHINM(Oxidation (M))_ SAVDVHINM(1) SAVDVHINM(110) 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2388305664062 2 501.239667 1000.46478 -0.36065 -0.00018077 0.089405 4.4813E-05 -0.27125 -0.00013596 501.23986580137273 30.537 0.429 30.537 30.402 30.831 0 53 20 4 0 0 0 0.0086904 1 15835 15835 107.19 71.06 1 44921000 57551 10287 38361 39236 67194 67194 1673 -0.035433532222555186 SAVDVHINM 9 Oxidation (M) _SAVDVHINM(Oxidation (M))_ SAVDVHINM(1) SAVDVHINM(110) 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.23974609375 2 501.239667 1000.46478 -0.19278 -9.663E-05 0.0042884 2.1495E-06 -0.18849 -9.448E-05 501.23970710563094 30.727 0.24377 30.727 30.628 30.872 0 21 11 2 0 0 0 0.0074135 1 15939 15939 110.67 66.816 1 44329000 57552 10287 38361 39236 67195 67195 1673 -0.035433532222555186 SAVDVHINM 9 Oxidation (M) _SAVDVHINM(Oxidation (M))_ SAVDVHINM(1) SAVDVHINM(100) 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2400817871094 2 501.239667 1000.46478 0.77885 0.00039039 -1.2536 -0.00062836 -0.47476 -0.00023797 501.2391140798165 35.424 0.79435 31.232 30.819 31.613 -4.1928 135 48 4 0 0 0 0.0085164 3 20454 20328;20454;20581 99.799 47.531 1 122320000 57553 10287 38361 39236 67196;67197;67198 67197 1673 -0.035433532222555186 SAVDVHINM 9 Unmodified _SAVDVHINM_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2428894042969 2 493.242209 984.469866 0.44276 0.00021839 -0.10479 -5.1686E-05 0.33798 0.0001667 493.2424437672244 46.563 0.28624 46.563 46.412 46.698 0 29 12 3 0 0 0 0.06294 1 25427 25427 41.84 5.7126 1 7409000 57554 10287 38361 39237 67199 67199 -0.022990493596466877 SAVDVHINM 9 Unmodified _SAVDVHINM_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2416381835938 2 493.242209 984.469866 1.0124 0.00049938 -0.31366 -0.00015471 0.69878 0.00034467 493.2421793279496 52.88 0.9226 47.076 46.822 47.745 -5.8042 111 54 4 0 0 0 0.0082548 5 33256 33256;33378;33496;33640;33779 96.367 50.667 1 260250000 57555 10287 38361 39237 67200;67201;67202;67203;67204 67200 -0.022990493596466877 SAVDVHINM 9 Unmodified _SAVDVHINM_ 0 0 0 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6 nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MSMS AL20221201_MKP_PDAC_01 4 493.2424621582031 2 493.242209 984.469866 NaN NaN NaN NaN NaN NaN NaN 53.862 1 48.057 47.557 48.557 -5.8042 0 0 0 0.34649 1 34093 34093 22.736 3.4793 1 57556 10287 38361 39237 67205 67205 -0.022990493596466877 SAVEEKVSY 9 Unmodified _SAVEEKVSY_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2511901855469 2 506.253297 1010.49204 -0.15487 -7.8401E-05 -0.30688 -0.00015536 -0.46175 -0.00023376 506.2531409158123 26.306 0.25321 26.306 26.175 26.428 0 46 12 5 0 0 0 0.015688 2 13494 13480;13494 67.838 17.905 1 11103000 57557 10211 38362 39238 67206;67207 67207 -0.012785464102307742 SAVEEKVSY 9 Unmodified _SAVEEKVSY_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2580261230469 2 506.253297 1010.49204 0.52738 0.00026699 0.48993 0.00024803 1.0173 0.00051501 506.2535871123891 30.031 0.26228 26.534 26.393 26.655 -3.497 19 12 2 0 0 0 0.0039711 2 16887 16887;16936 121.53 56.299 1 37633000 57558 10211 38362 39238 67208;67209 67208 -0.012785464102307742 SAVELVQEF 9 Unmodified _SAVELVQEF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2628479003906 2 511.263665 1020.51278 0.34714 0.00017748 -0.27974 -0.00014302 0.0674 3.4459E-05 511.2634409172604 69.435 0.36961 69.435 69.249 69.618 0 42 16 3 0 0 0 0.06187 2 38642 38642;38748 42.095 18.946 1 4532100 57559 8420 38363 39239 67210;67211 67210 0.003340439694397901 SAVELVQEF 9 Unmodified _SAVELVQEF_ 0 0 0 ENSG00000174442|ENST00000307897|ZWILCH;nc|ENSG00000174442|Q9H900-2|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH ENSG00000174442|ENST00000307897|ZWILCH MSMS AL20221201_MKP_PDAC_01 4 511.2641296386719 2 511.263665 1020.51278 NaN NaN NaN NaN NaN NaN NaN 77.197 1 71.021 70.521 71.521 -6.1757 0 0 0 0.08978 1 50490 50490 46.021 11.919 1 57560 8420 38363 39239 67212 67212 0.003340439694397901 SAVEQMWTS 9 Unmodified _SAVEQMWTS_ 0 0 0 REV__ENSG00000107719|ENST00000263563|PALD1 REV__ENSG00000107719|ENST00000263563|PALD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7313842773438 2 519.731674 1037.4488 0.45713 0.00023758 -0.77126 -0.00040085 -0.31413 -0.00016326 519.7312622657821 39.309 0.26678 39.309 39.202 39.469 0 29 12 3 0 0 0 0.43463 1 21074 21074 10.824 0.75 1 4291700 + 57561 18571 38364 39240 67213 67213 -0.06843059459151846 SAVGKTTSF 9 Unmodified _SAVGKTTSF_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2372131347656 2 449.23745 896.460347 -0.031437 -1.4123E-05 0.57254 0.00025721 0.5411 0.00024308 449.23767846620257 23.754 0.28797 23.754 23.605 23.893 0 25 14 2 0 0 0 0.30202 2 12084 12084;12179 17.113 2.2746 1 1702700 57562 8636 38365 39241 67214;67215 67214 0.0079750562646268 SAVGKTTSF 9 Unmodified _SAVGKTTSF_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2374572753906 2 449.23745 896.460347 0.68236 0.00030654 -0.90874 -0.00040824 -0.22637 -0.00010169 449.23694283885794 26.863 0.30265 23.826 23.646 23.949 -3.0365 23 15 2 0 0 0 0.047788 1 14802 14802 45.7 0 1 10434000 57563 8636 38365 39241 67216 67216 0.0079750562646268 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2008666992188 2 414.200336 826.386119 0.57776 0.00023931 0.013192 5.464E-06 0.59095 0.00024477 414.20034218273855 49.359 0.83553 48.974 48.485 49.321 -0.38515 63 41 2 0 0 0 0.24071 3 26392 26392;26494;26610 63.563 7.0216 1 2807400 + 57564 18503 38366 39242 67217;67218;67219 67217 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.3920288085938 1 827.393396 826.386119 0.1322 0.00010938 0.11323 9.3684E-05 0.24543 0.00020306 827.3935754227275 49.354 0.64311 48.974 48.607 49.25 -0.38029 45 31 2 0 0 0 0.31612 3 26396 26396;26501;26617 53.576 19.388 1 1872900 + 57565 18503 38366 39242 67220;67221;67222 67220 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2002563476562 2 414.200336 826.386119 1.0611 0.00043953 -0.02066 -8.5573E-06 1.0405 0.00043097 414.2002728259919 54.713 0.74874 48.847 48.5 49.249 -5.8653 81 46 2 0 0 0 0.18881 3 34551 34551;34688;34823 74.396 17.855 1 26382000 + 57566 18503 38366 39242 67223;67224;67225 67223 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 827.3933715820312 1 827.393396 826.386119 0.9331 0.00077204 -0.38962 -0.00032237 0.54348 0.00044967 827.3931263956651 54.698 0.68829 48.833 48.542 49.231 -5.8653 71 42 2 0 0 0 0.31612 4 34553 34553;34695;34833;34975 53.576 13.127 1 19522000 + 57567 18503 38366 39242 67226;67227;67228;67229 67226 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 414.7021179199219 2 414.200336 826.386119 1.0611 0.00043953 -0.02066 -8.5573E-06 1.0405 0.00043097 414.2002728259919 54.713 0.74874 48.847 48.5 49.249 -5.8653 81 46 2 0 0 0 8.7369 1 34688 34688 74.396 17.855 1 26382000 + 57568 18503 38366 39242 67230 67230 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 827.393396 826.386119 0.1322 0.00010938 0.11323 9.3684E-05 0.24543 0.00020306 827.3935754227275 49.354 0.64311 48.974 48.607 49.25 -0.38029 0.070614 0.00025597 NaN 53.576 45 31 2 NaN NaN NaN NaN 0 NaN NaN 0 1872900 + 57569 18503 38366 39242 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 414.200336 826.386119 0.57776 0.00023931 0.013192 5.464E-06 0.59095 0.00024477 414.20034218273855 49.359 0.83553 48.974 48.485 49.321 -0.38515 0.063287 1.4634E-05 NaN 74.396 63 41 2 NaN NaN NaN NaN 0 NaN NaN 0 2807400 + 57570 18503 38366 39242 -0.03401837465037261 SAVGYPSF 8 Unmodified _SAVGYPSF_ 0 0 0 REV__nc|ENSG00000106366|P05121-2|SERPINE1 REV__nc|ENSG00000106366|P05121-2|SERPINE1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 827.393396 826.386119 0.9331 0.00077204 -0.38962 -0.00032237 0.54348 0.00044967 827.3931263956651 54.698 0.68829 48.833 48.542 49.231 -5.8653 -0.070614 -0.00016008 NaN 53.576 71 42 2 NaN NaN NaN NaN 0 NaN NaN 0 19522000 + 57571 18503 38366 39242 -0.03401837465037261 SAVHELLEF 9 Unmodified _SAVHELLEF_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7736206054688 2 522.771657 1043.52876 0.38231 0.00019986 1.2345 0.00064537 1.6168 0.00084524 522.7726048279759 64.614 0.62776 64.614 64.386 65.013 0 83 29 4 0 0 0 0.34999 1 35973 35973 14.838 2.5976 1 18793000 57572 728 38367 39243 67231 67231 0.008737502063468128 SAVHELLEF 9 Unmodified _SAVHELLEF_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7719116210938 2 522.771657 1043.52876 0.28841 0.00015077 1.3049 0.00068217 1.5933 0.00083294 522.7722158030471 65.015 0.60104 64.531 64.169 64.77 -0.48428 56 27 3 0 0 0 0.095405 2 35511 35405;35511 34.102 11.366 1 8516900 57573 728 38367 39243 67232;67233 67233 0.008737502063468128 SAVHELLEF 9 Unmodified _SAVHELLEF_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.844970703125 2 522.771657 1043.52876 0.687 0.00035915 1.8764 0.00098093 2.5634 0.0013401 522.7725768618891 64.538 0.17438 64.528 64.451 64.625 -0.010529 12 8 2 0 0 0 0.20139 1 35345 35345 10.824 1.4765 1 968430 57574 728 38367 39243 67234 67234 0.008737502063468128 SAVIESVTF 9 Unmodified _SAVIESVTF_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 953.5009155273438 1 952.498589 951.491313 -0.31396 -0.00029905 1.2502 0.0011908 0.93623 0.00089176 952.5000056639686 64.713 0.17244 64.713 64.614 64.786 0 10 7 2 0 0 0 0.43463 1 36094 36094 10.824 0 1 787180 57575 3160 38368 39244 67235 67235 0.013626589407294887 SAVNIIRTF 9 Unmodified _SAVNIIRTF_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7957458496094 2 510.795466 1019.57638 1.0781 0.0005507 0.56686 0.00028955 1.645 0.00084024 510.7957194086074 57.71 0.24192 57.644 57.533 57.775 -0.066036 18 11 2 0 0 0 0.022461 1 31426 31426 61.09 17.318 1 2427000 57576 2782 38369 39245 67236 67236 0.06737449197180467 SAVPFKILY 9 Unmodified _SAVPFKILY_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8911743164062 2 519.305136 1036.59572 1.0943 0.00056826 -0.42331 -0.00021983 0.67096 0.00034843 519.30529488101 70.831 0.17306 70.866 70.763 70.936 0.035507 11 7 2 0 0 0 0.20727 1 38947 38947 4.3292 0 1 1275700 57577 5454 38370 39246 67237 67237 0.07888405488097305 SAVQILTLY 9 Unmodified _SAVQILTLY_ 0 0 0 ENST00000471759.5_1_1:76253229-76255856:+|nuORF;ENSG00000137955|ENST00000319942|RABGGTB ENST00000471759.5_1_1:76253229-76255856:+|nuORF ENST00000471759.5_1_1:76253229-76255856:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2916870117188 2 504.292225 1006.5699 0.16215 8.177E-05 -0.71172 -0.00035892 -0.54957 -0.00027715 504.2914247702468 82.344 0.1993 81.849 81.72 81.919 -0.4952 10 7 2 0 0 0 0.55144 1 45097 45097 4.3292 0.73274 1 352970 57578 4992 38371 39247 67238 67238 0.0668751124579785 SAVRCPWG 8 Unmodified _SAVRCPWG_ 0 0 0 REV__ENST00000595684.5_1_19:17648280-17648349:+|nuORF REV__ENST00000595684.5_1_19:17648280-17648349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2144775390625 2 438.213255 874.411957 0.38586 0.00016909 0.86429 0.00037874 1.2502 0.00054783 438.21423733224634 53.399 0.22258 52.947 52.803 53.026 -0.45173 33 10 5 0 0 0 0.80143 1 28869 28869 5.7604 3.1829 1 1255400 + 57579 29213 38372 39248 67239 67239 -0.030272664944163807 SAVRSGIVEY 10 Unmodified _SAVRSGIVEY_ 0 0 0 ENSG00000198056|ENST00000338193|PRIM1;ENST00000550224.5_1_12:57137757-57139879:-|nuORF ENSG00000198056|ENST00000338193|PRIM1 ENSG00000198056|ENST00000338193|PRIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.790283203125 2 540.787838 1079.56112 -0.39933 -0.00021595 1.2405 0.00067084 0.84115 0.00045488 540.7886300020849 34.843 0.31944 34.843 34.714 35.034 0 38 16 3 0 0 0 0.2667 1 18353 18353 29.437 6.7791 1 6366600 57580 10044 38373 39249 67240 67240 0.024525376093379236 SAVSRRLK 8 Unmodified _SAVSRRLK_ 0 0 0 REV__ENST00000316423.10_1_4:39523035-39529029:-|nuORF REV__ENST00000316423.10_1_4:39523035-39529029:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 458.9349670410156 2 458.787976 915.561398 0.57762 0.00026501 0.99054 0.00045445 1.5682 0.00071945 458.7886357833142 92.776 0.55231 86.601 86.364 86.916 -6.1757 101 34 4 0 0 0 8.7369 1 61221 61221 8.5933 3.8373 1 172770000 + 57581 25473 38374 39250 67241 67241 0.10024002119848774 SAVVQPGMARF 11 Unmodified _SAVVQPGMARF_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MSMS AL20221201_MKP_PDAC_01 4 388.2057189941406 3 388.206098 1161.59646 NaN NaN NaN NaN NaN NaN NaN 17.597 1 15.01 14.51 15.51 -2.5866 0 0 0 0.82644 1 9215 9215 5.8681 1.1522 1 + 57582 24696 38375 39251 67242 67242 0.022128768654965825 SAWEIISGW 9 Unmodified _SAWEIISGW_ 0 0 0 ENST00000491322.1_1_1:182354591-182354669:-|nuORF ENST00000491322.1_1_1:182354591-182354669:-|nuORF ENST00000491322.1_1_1:182354591-182354669:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.276611328125 2 524.758549 1047.50255 1.1031 0.00057886 -0.17479 -9.1724E-05 0.9283 0.00048713 525.2601237359906 50.857 0.41005 45.208 45.053 45.463 -5.649 37 24 2 0 0 0 0.15672 1 32001 32001 20.454 4.3045 1 26479000 57583 14279 38376 39252 67243 67243 -0.019305189651277033 SAWHLVLSF 9 Unmodified _SAWHLVLSF_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2864379882812 2 530.284734 1058.55492 1.0042 0.0005325 2.0965 0.0011118 3.1007 0.0016443 530.2864770735121 99.353 0.10196 93.177 93.113 93.214 -6.1757 10 6 2 0 0 0 0.008678 1 66141 66141 88.904 10.919 1 29296000 57584 7133 38377 39253 67244 67244 0.027980641684507646 SAWPGARV 8 Unmodified _SAWPGARV_ 0 0 0 REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000143630|ENST00000368358|HCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2279052734375 2 422.22722 842.439886 0.41209 0.00017399 1.4571 0.00061524 1.8692 0.00078924 422.22771364374574 53.83 0.37703 53.364 53.17 53.547 -0.46664 42 18 3 0 0 0 0.80311 1 29209 29209 4.756 2.1785 1 8761600 + 57585 20657 38378 39254 67245 67245 0.012363797573243573 SAWPGARV 8 Unmodified _SAWPGARV_ 0 0 0 REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000143630|ENST00000368358|HCN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.22722 842.439886 0.31188 0.00013169 1.6161 0.00068235 1.928 0.00081404 422.2277259243494 53.317 0.38577 53.317 53.12 53.506 0 -0.05508 -0.00011761 NaN 4.756 53 16 4 NaN NaN NaN NaN 0 NaN NaN 0 19330000 + 57586 20657 38378 39254 0.012363797573243573 SAWPGARV 8 Unmodified _SAWPGARV_ 0 0 0 REV__ENSG00000143630|ENST00000368358|HCN3 REV__ENSG00000143630|ENST00000368358|HCN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.22722 842.439886 -0.2239 -9.4535E-05 2.0467 0.00086417 1.8228 0.00076964 422.2279810109972 53.498 0.41856 53.435 53.157 53.576 -0.063423 0.063107 0.00024604 NaN 4.756 68 21 4 NaN NaN NaN NaN 0 NaN NaN 0 122800000 + 57587 20657 38378 39254 0.012363797573243573 SAYEALEKY 9 Unmodified _SAYEALEKY_ 0 0 0 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2611083984375 2 537.261122 1072.50769 0.27904 0.00014992 -0.042683 -2.2932E-05 0.23636 0.00012699 537.2610634563999 39.671 0.42413 39.671 39.488 39.912 0 67 20 5 0 0 0 0.011291 2 21230 21230;21336 76.825 46.188 1 117050000 57588 558 38379 39255 67246;67247 67246 -0.025662598931603497 SAYEALEKY 9 Unmodified _SAYEALEKY_ 0 0 0 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2621459960938 2 537.261122 1072.50769 0.32214 0.00017307 0.34621 0.000186 0.66834 0.00035907 537.2613365583926 39.646 0.18427 39.653 39.566 39.75 0.0069313 13 8 2 0 0 0 0.18144 1 21142 21142 24.991 15.608 1 964880 57589 558 38379 39255 67248 67248 -0.025662598931603497 SAYEALEKY 9 Unmodified _SAYEALEKY_ 0 0 0 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 ENSG00000025772|ENST00000372813|TOMM34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2615356445312 2 537.261122 1072.50769 0.4492 0.00024134 1.247 0.00066994 1.6962 0.00091128 537.2609233320956 44.934 0.69598 40.082 39.614 40.31 -4.852 95 51 3 0 0 0 0.0086209 2 27516 27375;27516 89.401 64.001 1 131970000 57590 558 38379 39255 67249;67250 67250 -0.025662598931603497 SAYEFEFTGP 10 Unmodified _SAYEFEFTGP_ 0 0 0 REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1 REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1694030761719 3 383.169595 1146.48696 0.31832 0.00012197 -0.017266 -6.6158E-06 0.30105 0.00011535 383.1695024567676 47.968 0.24108 47.968 47.81 48.051 0 25 11 3 0 0 0 0.5802 1 26269 26269 12.175 1.3752 1 3325400 + 57591 19291 38380 39256 67251 67251 -0.08042850272863689 SAYEFEFTGP 10 Unmodified _SAYEFEFTGP_ 0 0 0 REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1 REV__nc|ENSG00000121390|Q8WXF1-2|PSPC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 383.169595 1146.48696 0.31832 0.00012197 -0.017266 -6.6158E-06 0.30105 0.00011535 383.1695024567676 47.968 0.24108 47.968 47.81 48.051 0 0.0065737 0.0003691 NaN 12.175 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3325400 + 57592 19291 38380 39256 -0.08042850272863689 SAYEFYHAL 9 Unmodified _SAYEFYHAL_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7560424804688 2 550.756007 1099.49746 -0.32297 -0.00017788 1.1591 0.00063836 0.8361 0.00046049 550.7564073461155 55.356 0.26819 55.356 55.241 55.509 0 28 11 3 0 0 0 0.052168 2 30757 30735;30757 44.407 18.066 1 4154500 57593 3186 38381 39257 67252;67253 67253 -0.048308228277846865 SAYEFYHAL 9 Unmodified _SAYEFYHAL_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.75341796875 2 550.756007 1099.49746 -0.2424 -0.0001335 -0.91394 -0.00050336 -1.1563 -0.00063686 550.7550672602736 55.941 0.26092 55.463 55.34 55.601 -0.47798 21 12 2 0 0 0 0.087258 1 30348 30348 36.044 14.298 1 7211700 57594 3186 38381 39257 67254 67254 -0.048308228277846865 SAYEFYHAL 9 Unmodified _SAYEFYHAL_ 0 0 0 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 ENSG00000116016|ENST00000263734|EPAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.3145751953125 2 550.756007 1099.49746 1.0746 0.00059183 0.42022 0.00023144 1.4948 0.00082327 550.7562449904118 61.436 0.37254 55.289 55.136 55.508 -6.1478 31 18 2 0 0 0 0.19298 1 39682 39682 13.508 3.434 1 23565000 57595 3186 38381 39257 67255 67255 -0.048308228277846865 SAYEHEENNFI 11 Unmodified _SAYEHEENNFI_ 0 0 0 REV__ENST00000352684.2_1_8:356980-385646:+|nuORF REV__ENST00000352684.2_1_8:356980-385646:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.7921142578125 2 676.791306 1351.56806 0.86096 0.00058269 0.62181 0.00042083 1.4828 0.0010035 676.7918772706633 73.156 0.56847 66.98 66.734 67.302 -6.1757 43 27 2 0 0 0 0.65108 1 47927 47927 8.7454 0 1 17373000 + 57596 20884 38382 39258 67256 67256 -0.09366194300764619 SAYGGLTSP 9 Unmodified _SAYGGLTSP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.41064453125 1 852.409774 851.402498 0.53071 0.00045239 0.14946 0.0001274 0.68018 0.00057979 852.4098561511876 36.644 0.40841 36.644 36.388 36.796 0 49 19 4 0 0 0 0.0088975 2 19473 19365;19473 104.8 37.455 1 13989000 + 57597 165;150 38383 39259 67257;67258 67258 -0.029147562989578546 SAYGGLTSP 9 Unmodified _SAYGGLTSP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7084655761719 2 426.708525 851.402498 0.59475 0.00025379 -0.47724 -0.00020364 0.11751 5.0144E-05 426.7083171242598 36.62 0.32929 36.62 36.467 36.796 0 28 15 3 0 0 0 0.2001 1 19426 19426 23.148 8.5667 1 5039000 + 57598 165;150 38383 39259 67259 67259 -0.029147562989578546 SAYGGLTSP 9 Unmodified _SAYGGLTSP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 852.409912109375 1 852.409774 851.402498 0.62274 0.00053083 -0.07112 -6.0624E-05 0.55162 0.00047021 852.4096144500802 43.054 0.37413 38.289 38.045 38.419 -4.7648 42 24 2 0 0 0 0.013323 2 25947 25947;26077 71.134 37.031 1 16230000 + 57599 165;150 38383 39259 67260;67261 67260 -0.029147562989578546 SAYGGLTSP 9 Unmodified _SAYGGLTSP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.7095642089844 2 426.708525 851.402498 0.92358 0.0003941 0.69277 0.00029561 1.6163 0.00068971 426.7087261406615 43.062 0.29331 38.297 38.083 38.377 -4.7648 23 18 2 0 0 0 0.16226 1 26047 26047 26.884 1.4843 1 9289600 + 57600 165;150 38383 39259 67262 67262 -0.029147562989578546 SAYGGLTSPG 10 Unmodified _SAYGGLTSPG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2188110351562 2 455.219257 908.423961 -0.25521 -0.00011618 -0.82543 -0.00037575 -1.0806 -0.00049193 455.21896225915157 34.132 0.34293 34.132 33.926 34.269 0 52 17 4 0 0 0 0.16524 2 17988 17884;17988 37.974 12.575 1 57005000 + 57601 165;150 38384 39260 67263;67264 67264 -0.033913712702315024 SAYGGLTSPG 10 Unmodified _SAYGGLTSPG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 909.4309692382812 1 909.431238 908.423961 -0.66866 -0.0006081 -0.19846 -0.00018049 -0.86712 -0.00078859 909.4309333913264 34.131 0.34293 34.131 33.926 34.269 0 51 17 4 0 0 0 0.01132 2 17887 17887;17998 85.272 31.439 1 69998000 + 57602 165;150 38384 39260 67265;67266 67265 -0.033913712702315024 SAYGGLTSPG 10 Unmodified _SAYGGLTSPG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4308471679688 1 909.431238 908.423961 -0.024244 -2.2048E-05 -0.048825 -4.4403E-05 -0.073069 -6.6451E-05 909.4310885731373 40.099 0.52906 35.57 35.26 35.79 -4.5294 114 44 3 0 0 0 0.035736 2 23842 23709;23842 65.235 25.278 1 198360000 + 57603 165;150 38384 39260 67267;67268 67268 -0.033913712702315024 SAYGGLTSPG 10 Unmodified _SAYGGLTSPG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2196655273438 2 455.219257 908.423961 0.36379 0.0001656 0.33133 0.00015083 0.69511 0.00031643 455.21936057261576 40.053 0.57706 35.524 35.247 35.824 -4.5294 125 47 3 0 0 0 0.33553 2 23866 23735;23866 25.399 8.457 1 173560000 + 57604 165;150 38384 39260 67269;67270 67270 -0.033913712702315024 SAYGPGLVY 9 Unmodified _SAYGPGLVY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.4617919921875 1 926.46181 925.454533 0.065576 6.0754E-05 0.48485 0.00044919 0.55042 0.00050994 926.4621758483474 55.155 0.36143 55.155 54.944 55.305 0 37 15 3 0 0 0 0.0086179 2 30649 30547;30649 89.427 51.276 1 7565600 57605 16209 38385 39261 67271;67272 67272 -0.011175928851912431 SAYGPGLVY 9 Unmodified _SAYGPGLVY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 926.4654541015625 1 926.46181 925.454533 -0.047557 -4.406E-05 0.63675 0.00058992 0.58919 0.00054586 926.4628505540761 55.787 0.24933 55.309 55.173 55.422 -0.47798 21 11 2 0 0 0 0.06187 1 30226 30226 42.095 18.946 1 3575800 57606 16209 38385 39261 67273 67273 -0.011175928851912431 SAYGPGLVY 9 Unmodified _SAYGPGLVY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.4628295898438 1 926.46181 925.454533 1.2782 0.0011842 0.47616 0.00044115 1.7543 0.0016253 926.4618095738703 62.999 0.47382 56.823 56.526 57 -6.1757 53 24 3 0 0 0 0.0086629 3 40661 40537;40661;40795 101.72 61.273 1 42883000 57607 16209 38385 39261 67274;67275;67276 67275 -0.011175928851912431 SAYGSSYTY 9 Unmodified _SAYGSSYTY_ 0 0 0 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 ENSG00000149658|ENST00000370339|YTHDF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7088623046875 2 499.708722 997.402892 -0.29645 -0.00014814 1.6152 0.00080712 1.3187 0.00065898 499.7091822768065 33.815 0.17891 33.815 33.747 33.926 0 12 8 2 0 0 0 0.39863 1 17800 17800 12.532 6.7711 1 1319100 57608 6032 38386 39262 67277 67277 -0.09591381369750707 SAYGSVKAY 9 Unmodified _SAYGSVKAY_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2;ENST00000557937.5_1_15:60655071-60678274:-|nuORF ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2361755371094 2 473.23745 944.460347 -0.29821 -0.00014112 -1.9204 -0.0009088 -2.2186 -0.0010499 473.23623395391775 26.079 0.24253 26.079 25.945 26.187 0 38 13 4 0 0 0 0.029718 1 13363 13363 55.503 24.234 1 21061000 57609 9079 38387 39263 67278 67278 -0.014104943735219422 SAYIDPAAF 9 Unmodified _SAYIDPAAF_ 0 0 0 nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA nc|ENSG00000245848|P49715-2|CEBPA nc|ENSG00000245848|P49715-2|CEBPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4557495117188 1 954.456724 953.449448 -0.24929 -0.00023793 0.37023 0.00035337 0.12094 0.00011544 954.4569664902778 64.733 0.28928 64.733 64.63 64.919 0 23 12 2 0 0 0 0.095405 1 36081 36081 34.102 1.797 1 1770700 57610 10734 38388 39264 67279 67279 -0.02913896747816125 SCALSPWSHF 10 Unmodified _SCALSPWSHF_ 0 0 0 REV__ENST00000473243.5_1_19:19756247-19758388:-|nuORF REV__ENST00000473243.5_1_19:19756247-19758388:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8391723632812 3 378.839415 1133.49641 NaN NaN NaN NaN NaN NaN NaN 26.409 1 26.409 25.909 26.909 0 0 0 0 0.96981 1 13575 13575 1.9064 0 1 + 57611 27469 38389 39265 67280 67280 -0.06499360468342275 SCAPDPAL 8 Unmodified _SCAPDPAL_ 0 0 0 ENST00000481663.1_1_3:148801501-148804285:-|nuORF ENST00000481663.1_1_3:148801501-148804285:-|nuORF ENST00000481663.1_1_3:148801501-148804285:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.17919921875 2 387.178546 772.34254 NaN NaN NaN NaN NaN NaN NaN 15.212 1 15.212 14.712 15.712 0 0 0 0 0.97444 1 7307 7307 2.8892 0 1 57612 14087 38390 39266 67281 67281 -0.05273770233839059 SCDCPQCSS 9 Unmodified _SCDCPQCSS_ 0 0 0 REV__ENSG00000130702|ENST00000252999|LAMA5 REV__ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.2833251953125 1 929.279764 928.272488 1.5929 0.0014802 -0.66985 -0.00062248 0.92304 0.00085777 929.2790483282588 106.03 0.13017 99.85 99.784 99.914 -6.1757 32 17 2 0 0 0 0.58865 1 70986 70986 2.0598 0 1 3133300 + 57613 19736 38391 39267 67282 67282 -0.19451759956268688 SCDRDCTDT 9 Unmodified _SCDRDCTDT_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.1760559082031 2 508.176406 1014.33826 NaN NaN NaN NaN NaN NaN NaN 12.522 1 12.531 12.031 13.031 0.0096512 0 0 0 0.8622 1 6175 6175 0 0 1 57614 6438 38392 39268 67283 67283 -0.16833647509736238 SCDRDCTDT 9 Unmodified _SCDRDCTDT_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MSMS AL20221201_MKP_PDAC_01 4 508.1758117675781 2 508.176406 1014.33826 NaN NaN NaN NaN NaN NaN NaN 9.7843 1 7.3024 6.8024 7.8024 -2.482 0 0 0 0.8622 1 4935 4935 0 0 1 57615 6438 38392 39268 67284 67284 -0.16833647509736238 SCEISVSPL 9 Unmodified _SCEISVSPL_ 0 0 0 ENST00000528808.1_1_11:60150614-60157189:+|nuORF ENST00000528808.1_1_11:60150614-60157189:+|nuORF ENST00000528808.1_1_11:60150614-60157189:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7311096191406 2 467.731143 933.447733 0.49361 0.00023088 -0.49274 -0.00023047 0.00087658 4.1E-07 467.73092915993504 63.325 0.47054 63.325 63.096 63.567 0 40 23 2 0 0 0 0.30562 1 35365 35365 16.942 3.4344 1 10210000 57616 14865 38393 39269 67285 67285 -0.021652738280749873 SCELWWWMTT 10 Unmodified _SCELWWWMTT_ 0 0 0 ENST00000504897.2_1_5:140049030-140049132:+|nuORF ENST00000504897.2_1_5:140049030-140049132:+|nuORF ENST00000504897.2_1_5:140049030-140049132:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.7838134765625 2 671.783384 1341.55222 -0.20965 -0.00014084 -0.43318 -0.000291 -0.64283 -0.00043184 671.7834323251894 52.355 0.26741 52.355 52.199 52.467 0 35 11 5 0 0 0 0.71123 1 28946 28946 1.6526 0.17072 1 3172500 57617 14505 38394 39270 67286 67286 -0.1048989534303928 SCENTDGCHTF 11 Unmodified _SCENTDGCHTF_ 0 0 0 REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2 REV__nc|ENSG00000175356|Q9NQ36-3|SCUBE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.215576171875 2 607.216063 1212.41757 0.30739 0.00018665 -4.0817 -0.0024785 -3.7743 -0.0022918 607.2139375344068 36.803 0.22755 36.803 36.67 36.897 0 22 10 3 0 0 0 0.73115 1 19572 19572 1.3295 0.72803 1 1570500 + 57618 22866 38395 39271 67287 67287 -0.1801400055560407 SCFEGHHLE 9 Unmodified _SCFEGHHLE_ 0 0 0 REV__ENST00000534280.5_1_19:50180503-50183151:+|nuORF REV__ENST00000534280.5_1_19:50180503-50183151:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7227783203125 2 529.721641 1057.42873 0.64059 0.00033934 1.2653 0.00067026 1.9059 0.0010096 529.7221169026285 84.324 0.63763 78.149 77.777 78.414 -6.1757 85 35 3 0 0 0 0.4887 1 55591 55591 7.9102 7.9102 1 56063000 + 57619 28497 38396 39272 67288 67288 -0.09768810399100403 SCHPLFGGGGG 11 Unmodified _SCHPLFGGGGG_ 0 0 0 REV__ENST00000335648.3_1_1:23697575-23698100:+|nuORF REV__ENST00000335648.3_1_1:23697575-23698100:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7164916992188 2 494.718901 987.42325 NaN NaN NaN NaN NaN NaN NaN 4.4093 1 4.3364 3.8364 4.8364 -0.072869 0 0 0 0.9435 1 2181 2181 0 0 1 + 57620 25639 38397 39273 67289 67289 -0.07096489190905686 SCHVHCQHLHC 11 Unmodified _SCHVHCQHLHC_ 0 0 0 ENST00000472828.1_1_2:179695251-179701862:-|nuORF ENST00000472828.1_1_2:179695251-179701862:-|nuORF ENST00000472828.1_1_2:179695251-179701862:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.2659301757812 2 652.265701 1302.51685 NaN NaN NaN NaN NaN NaN NaN 0.71095 1 0.63766 0.13766 1.1377 -0.073289 0 0 0 0.9435 1 356 356 0 0 1 57621 13914 38398 39274 67290 67290 -0.12230836351795915 SCKKGKGK 8 Unmodified _SCKKGKGK_ 0 0 0 REV__ENST00000285518.10_1_8:6615382-6615451:+|nuORF REV__ENST00000285518.10_1_8:6615382-6615451:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2438049316406 2 418.244555 834.474557 -0.096156 -4.0217E-05 1.7802 0.00074457 1.6841 0.00070435 418.2440570355427 65.333 0.45711 65.333 65.093 65.55 0 37 17 3 0 0 0 0.81107 1 36422 36422 0 0 1 1626100 + 57622 25218 38399 39275 67291 67291 0.05069879573784419 SCLDHVISY 9 Carbamidomethyl (C) _SC(Carbamidomethyl (C))LDHVISY_ SC(1)LDHVISY SC(71)LDHVISY 0 1 0 nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF nc|ENSG00000182473|Q9UPT5-2|EXOC7 nc|ENSG00000182473|Q9UPT5-2|EXOC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2542724609375 2 547.252774 1092.491 0.84303 0.00046135 3.6146 0.0019781 4.4576 0.0024394 547.2534949821377 52.999 0.26807 47.195 47.05 47.318 -5.8042 46 14 4 0 0 0 0.013323 1 33442 33442 71.134 29.039 1 71025000 57623 9057 38400 39276 67292 67292 850 -0.05155084050784353 SCLIHVTYHL 10 Unmodified _SCLIHVTYHL_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8734130859375 3 395.874348 1184.60121 0.90523 0.00035836 -1.1911 -0.00047154 -0.28591 -0.00011319 395.8732194173821 39.6 0.3461 35.149 34.964 35.31 -4.4509 50 21 3 0 0 0 0.60623 1 23567 23567 6.1918 0 1 74887000 + 57624 20883 38401 39277 67293 67293 0.016297610082574465 SCLPWFYGR 9 Unmodified _SCLPWFYGR_ 0 0 0 REV__ENST00000463422.5_1_2:86001765-86002047:+|nuORF REV__ENST00000463422.5_1_2:86001765-86002047:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.27880859375 2 564.768394 1127.52224 0.015234 8.604E-06 -0.049723 -2.8082E-05 -0.034488 -1.9478E-05 565.270362772068 25.58 0.23277 22.697 22.549 22.782 -2.8831 20 12 2 0 0 0 0.21052 1 13930 13930 6.7232 0.51738 1 3508200 + 57625 27350 38402 39278 67294 67294 -0.03642466226028773 SCMDDPHLW 9 Unmodified _SCMDDPHLW_ 0 0 0 nc|ENSG00000102125|Q16635-9|TAFAZZIN;nc|ENSG00000102125|Q16635-8|TAFAZZIN;nc|ENSG00000102125|Q16635-7|TAFAZZIN;nc|ENSG00000102125|Q16635-6|TAFAZZIN;nc|ENSG00000102125|Q16635|TAFAZZIN;nc|ENSG00000102125|Q16635-4|TAFAZZIN;nc|ENSG00000102125|Q16635-2|TAFAZZIN;nc|ENSG00000102125|Q16635-5|TAFAZZIN;ENSG00000102125|ENST00000601016|TAFAZZIN nc|ENSG00000102125|Q16635-9|TAFAZZIN nc|ENSG00000102125|Q16635-9|TAFAZZIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.210205078125 2 552.217877 1102.4212 NaN NaN NaN NaN NaN NaN NaN 90.71 1 90.71 90.21 91.21 0 0 0 0 0.85737 1 50179 50179 0.6015 0.14316 1 57626 2019 38403 39279 67295 67295 -0.1259128599106134 SCNQSMNLKRH 11 Unmodified _SCNQSMNLKRH_ 0 0 0 nc|ENSG00000163795|Q8N8E2-3|ZNF513;nc|ENSG00000163795|Q8N8E2-2|ZNF513;ENSG00000163795|ENST00000323703|ZNF513 nc|ENSG00000163795|Q8N8E2-3|ZNF513 nc|ENSG00000163795|Q8N8E2-3|ZNF513 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.878173828125 3 439.876534 1316.60777 NaN NaN NaN NaN NaN NaN NaN 28.491 1 28.521 28.021 29.021 0.029564 0 0 0 0.94307 1 14836 14836 0.08335 0.010087 1 57627 7068 38404 39280 67296 67296 -0.03786669102692031 SCPLCLPLRPA 11 Unmodified _SCPLCLPLRPA_ 0 0 0 ENST00000547103.5_1_12:80658901-80658961:+|nuORF ENST00000547103.5_1_12:80658901-80658961:+|nuORF ENST00000547103.5_1_12:80658901-80658961:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5442810058594 3 390.543833 1168.60967 0.55041 0.00021496 0.83608 0.00032653 1.3865 0.00054149 390.54415379427275 24.608 0.37967 21.725 21.541 21.921 -2.8831 49 20 3 0 0 0 0.44182 1 13363 13363 11.631 0 1 17339000 57628 15117 38405 39281 67297 67297 0.032109916532135685 SCQERCRQRE 10 Unmodified _SCQERCRQRE_ 0 0 0 REV__ENST00000514368.1_1_5:67070839-67088926:+|nuORF REV__ENST00000514368.1_1_5:67070839-67088926:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.1961059570312 3 432.196155 1293.56664 0.32046 0.0001385 -0.45061 -0.00019475 -0.13015 -5.6252E-05 432.1959972453581 28.181 0.24949 28.21 28.083 28.332 0.029564 13 9 2 0 0 0 0.69917 1 14680 14680 1.4551 0.82829 1 1712200 + 57629 28192 38406 39282 67298 67298 -0.06840430142142395 SCRPSHRD 8 Unmodified _SCRPSHRD_ 0 0 0 nc|ENSG00000142233|Q8WTR8-2|NTN5;ENST00000600468.1_1_19:49166991-49176216:-|nuORF;ENSG00000142233|ENST00000270235|NTN5 nc|ENSG00000142233|Q8WTR8-2|NTN5 nc|ENSG00000142233|Q8WTR8-2|NTN5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.7655334472656 2 479.2196 956.424647 0.77334 0.0003706 -0.037665 -1.805E-05 0.73567 0.00035255 479.21962154047407 42.238 0.35862 37.554 37.335 37.693 -4.6846 36 22 2 0 0 0 8.7369 1 25332 25332 7.9102 7.9102 1 11110000 57630 5404 38407 39283 67299 67299 -0.055308551021767016 SCSHPLELL 9 Carbamidomethyl (C) _SC(Carbamidomethyl (C))SHPLELL_ SC(1)SHPLELL SC(60)SHPLELL 0 1 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2638549804688 2 528.263142 1054.51173 0.81092 0.00042838 -0.71399 -0.00037718 0.096927 5.1203E-05 528.2628364844516 47.999 0.60131 42.765 42.451 43.053 -5.2339 88 36 4 0 0 0 0.023164 1 29845 29845 60.39 9.5345 1 89401000 57631 4022 38408 39284 67300 67300 406 -0.013344936711291666 SCSVLDLNAFE 11 Unmodified _SCSVLDLNAFE_ 0 0 0 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8533020019531 3 399.85339 1196.53834 0.63541 0.00025407 1.0471 0.00041868 1.6825 0.00067275 399.8540081694607 29.835 0.24377 26.534 26.459 26.703 -3.3016 17 11 2 0 0 0 0.30985 1 16823 16823 16.275 0.7361 1 26332000 57632 10169;10115 38409 39285 67301 67301 -0.05206849570481609 SCSYDGLD 8 Unmodified _SCSYDGLD_ 0 0 0 nc|ENSG00000162572|P51172-1|SCNN1D;nc|ENSG00000162572|P51172-2|SCNN1D;ENSG00000162572|ENST00000379116|SCNN1D nc|ENSG00000162572|P51172-1|SCNN1D nc|ENSG00000162572|P51172-1|SCNN1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.3160400390625 1 859.313825 858.306548 1.3996 0.0012027 -0.72895 -0.00062639 0.67067 0.00057632 859.3132080439365 103.56 0.055679 97.383 97.353 97.409 -6.1757 16 9 2 0 0 0 0.80676 1 69420 69420 2.5775 0 1 10111000 57633 6874 38410 39286 67302 67302 -0.12827272201343476 SCTFFFSCVM 10 Unmodified _SCTFFFSCVM_ 0 0 0 REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2347412109375 2 586.234681 1170.45481 0.45273 0.00026541 0.60926 0.00035717 1.062 0.00062258 586.2347234867526 71.779 0.3485 71.303 71.121 71.469 -0.47609 30 13 3 0 0 0 0.6785 1 39252 39252 5.2969 0.96765 1 2555500 + 57634 25764 38411 39287 67303 67303 -0.12360000543526439 SCTFFFSCVM 10 Unmodified _SCTFFFSCVM_ 0 0 0 REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 586.234681 1170.45481 0.45273 0.00026541 0.60926 0.00035717 1.062 0.00062258 586.2347234867526 71.779 0.3485 71.303 71.121 71.469 -0.47609 0.01915 -0.00026034 NaN 5.2969 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2555500 + 57635 25764 38411 39287 -0.12360000543526439 SCTFFFSCVM 10 Unmodified _SCTFFFSCVM_ 0 0 0 REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF REV__ENST00000346964.6_2_3:196771204-196771396:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 586.234681 1170.45481 1.3372 0.00078391 2.508 0.0014703 3.8452 0.0022542 586.2355784859533 71.225 0.21428 71.264 71.13 71.344 0.039024 -0.01915 0.0019659 NaN 5.2969 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 433550 + 57636 25764 38411 39287 -0.12360000543526439 SCTSCWDYEAF 11 Unmodified _SCTSCWDYEAF_ 0 0 0 REV__ENSG00000163637|ENST00000638394|PRICKLE2 REV__ENSG00000163637|ENST00000638394|PRICKLE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.3629150390625 2 656.236464 1310.45837 -0.12776 -8.3838E-05 0.60045 0.00039404 0.47269 0.0003102 656.7385696921863 61.986 0.23507 61.986 61.864 62.099 0 19 9 3 0 0 0 0.30565 1 34597 34597 1.4819 0 1 1377500 + 57637 21794 38412 39288 67304 67304 -0.18443659235981613 SCTSDNEQLF 10 Unmodified _SCTSDNEQLF_ 0 0 0 REV__ENST00000418289.1_1_2:207630224-207631421:+|nuORF REV__ENST00000418289.1_1_2:207630224-207631421:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8258972167969 3 381.825611 1142.455 0.098676 3.7677E-05 -2.542 -0.00097061 -2.4434 -0.00093293 381.8252880578578 39.566 0.35875 39.566 39.341 39.7 0 48 16 4 0 0 0 0.69377 1 21181 21181 1.7423 0.67081 1 5636300 + 57638 26799 38413 39289 67305 67305 -0.1105258601830883 SCYLNIGACL 10 Unmodified _SCYLNIGACL_ 0 0 0 ENSG00000131634|ENST00000566264|TMEM204 ENSG00000131634|ENST00000566264|TMEM204 ENSG00000131634|ENST00000566264|TMEM204 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.745849609375 2 528.74627 1055.47799 -0.21627 -0.00011435 1.1093 0.00058655 0.89306 0.0004722 528.7461625780154 41.195 0.23946 41.195 41.065 41.304 0 17 11 2 0 0 0 0.56348 1 22210 22210 13.042 1.4022 1 1833500 57639 4338 38414 39290 67306 67306 -0.04753238434545892 SDAEFKKIF 9 Unmodified _SDAEFKKIF_ 0 0 0 ENSG00000121931|ENST00000369763|LRIF1;nc|ENSG00000121931|Q5T3J3-2|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 ENSG00000121931|ENST00000369763|LRIF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1470642089844 3 362.193963 1083.56006 0.028328 1.026E-05 0.9794 0.00035473 1.0077 0.00036499 362.1944806941928 39.983 0.21567 39.983 39.873 40.089 0 17 10 2 0 0 0 0.21185 1 21445 21445 3.8763 0 1 1167900 57640 3610 38415 39291 67307 67307 0.02162323240418118 SDAKKYRCRRC 11 Unmodified _SDAKKYRCRRC_ 0 0 0 ENSG00000185669|ENST00000332281|SNAI3 ENSG00000185669|ENST00000332281|SNAI3 ENSG00000185669|ENST00000332281|SNAI3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 693.3482055664062 2 693.34808 1384.68161 NaN NaN NaN NaN NaN NaN NaN 16.102 1 16.107 15.607 16.607 0.0050564 0 0 0 0.94307 1 8057 8057 0.30703 0 1 57641 9399 38416 39292 67308 67308 0.004652990596468953 SDDDDDDDDGF 11 Unmodified _SDDDDDDDDGF_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10;ENST00000524979.1_1_11:108739044-108811147:+|nuORF ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MSMS AL20221201_MKP_PDAC_01 4 410.7894897460938 3 410.789948 1229.34801 NaN NaN NaN NaN NaN NaN NaN 0.11245 1 -2.3695 -2.8695 -1.8695 -2.482 0 0 0 0.9435 1 61 61 0 0 1 57642 8732 38417 39293 67309 67309 -0.2574850948965377 SDDDDDSNES 10 Unmodified _SDDDDDSNES_ 0 0 0 ENSG00000102401|ENST00000471229|ARMCX3 ENSG00000102401|ENST00000471229|ARMCX3 ENSG00000102401|ENST00000471229|ARMCX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.7829895019531 3 366.782905 1097.32689 NaN NaN NaN NaN NaN NaN NaN 7.6192 1 7.5276 7.0276 8.0276 -0.09156 0 0 0 1.0061 1 3744 3744 0 0 1 57643 2044 38418 39294 67310 67310 -0.21788474798495372 SDDDSSEDSD 10 Unmodified _SDDDSSEDSD_ 0 0 0 REV__nc|ENSG00000081237|P08575-7|PTPRC REV__nc|ENSG00000081237|P08575-7|PTPRC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.4803466796875 2 536.16527 1070.31599 NaN NaN NaN NaN NaN NaN NaN 24.87 1 24.894 24.394 25.394 0.024429 0 0 0 1.0061 1 12846 12846 0 0 1 + 57644 17688 38419 39295 67311 67311 -0.21635877172775508 SDDDSSEDSD 10 Unmodified _SDDDSSEDSD_ 0 0 0 REV__nc|ENSG00000081237|P08575-7|PTPRC REV__nc|ENSG00000081237|P08575-7|PTPRC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.1658325195312 2 536.16527 1070.31599 NaN NaN NaN NaN NaN NaN NaN 28.215 1 28.245 27.745 28.745 0.029564 0 0 0 1.0061 1 14683 14683 0 0 1 + 57645 17688 38419 39295 67312 67312 -0.21635877172775508 SDDDSSEDSD 10 Unmodified _SDDDSSEDSD_ 0 0 0 REV__nc|ENSG00000081237|P08575-7|PTPRC REV__nc|ENSG00000081237|P08575-7|PTPRC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.1658325195312 2 536.16527 1070.31599 NaN NaN NaN NaN NaN NaN NaN 40.894 1 40.892 40.392 41.392 -0.0017929 0 0 0 1.0061 1 21825 21825 0 0 1 + 57646 17688 38419 39295 67313 67313 -0.21635877172775508 SDDQGLVEL 9 Unmodified _SDDQGLVEL_ 0 0 0 REV__ENSG00000019505|ENST00000020926|SYT13 REV__ENSG00000019505|ENST00000020926|SYT13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.4669189453125 1 975.462932 974.455655 0.49578 0.00048362 0.32253 0.00031462 0.81831 0.00079824 975.4634266567391 82.57 0.28574 82.075 81.941 82.227 -0.4952 19 11 2 0 0 0 0.40476 2 45162 45162;45268 12.241 2.8575 1 945610 + 57647 17102 38420 39296 67314;67315 67314 -0.03259423306928966 SDDQHYLQV 9 Unmodified _SDDQHYLQV_ 0 0 0 CON__P17697 CON__P17697 CON__P17697 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.4382019042969 3 368.836727 1103.48835 NaN NaN NaN NaN NaN NaN NaN 0.34512 1 0.34512 -0.15488 0.84512 0 0 0 0 0.85852 1 172 172 0.20686 0.066965 1 + 57648 172 38421 39297 67316 67316 -0.05925216184095916 SDDSPSSSPS 10 Unmodified _SDDSPSSSPS_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.1874389648438 2 483.188351 964.362149 0.87834 0.00042441 -0.528 -0.00025512 0.35035 0.00016928 483.1880399902649 34.592 0.5565 30.497 30.196 30.752 -4.0951 98 32 4 0 0 0 0.69917 1 19834 19834 2.9952 2.9952 1 81492000 + 57649 23718 38422 39298 67317 67317 -0.12145767480024006 SDDSPSSSPS 10 Unmodified _SDDSPSSSPS_ 0 0 0 REV__ENSG00000188596|ENST00000524981|CFAP54 REV__ENSG00000188596|ENST00000524981|CFAP54 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 483.188351 964.362149 0.87834 0.00042441 -0.528 -0.00025512 0.35035 0.00016928 483.1880399902649 34.592 0.5565 30.497 30.196 30.752 -4.0951 0.18892 -0.00010716 NaN 2.9952 98 32 4 NaN NaN NaN NaN 0 NaN NaN 0 81492000 + 57650 23718 38422 39298 -0.12145767480024006 SDDVPHLT 8 Unmodified _SDDVPHLT_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2666015625 2 442.211432 882.408311 0.9303 0.00041139 -0.42347 -0.00018726 0.50683 0.00022413 442.2112188967335 34.374 0.38366 30.279 30.089 30.473 -4.0951 26 21 2 0 0 0 8.7369 1 19718 19718 13.508 2.684 1 12419000 + 57651 20360 38423 39299 67318 67318 -0.03759657787281867 SDEDECNQLF 10 Unmodified _SDEDECNQLF_ 0 0 0 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.22900390625 2 600.229693 1198.44483 0.549 0.00032953 -1.906 -0.001144 -1.357 -0.00081452 600.22877543554 83.189 0.3045 82.691 82.533 82.837 -0.49751 22 11 3 0 0 0 0.69377 1 45552 45552 3.5965 0 1 920750 + 57652 17855 38424 39300 67319 67319 -0.14645193743558593 SDEDECNQLF 10 Unmodified _SDEDECNQLF_ 0 0 0 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 600.229693 1198.44483 -0.033796 -2.0285E-05 -0.43272 -0.00025973 -0.46652 -0.00028002 600.2298084761886 82.654 0.1633 82.654 82.56 82.723 0 -0.018473 0.00058796 NaN 3.5965 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 239360 + 57653 17855 38424 39300 -0.14645193743558593 SDEDECNQLF 10 Unmodified _SDEDECNQLF_ 0 0 0 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 REV__nc|ENSG00000090372|Q9NRL3-2|STRN4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 600.229693 1198.44483 0.549 0.00032953 -1.906 -0.001144 -1.357 -0.00081452 600.22877543554 83.189 0.3045 82.691 82.533 82.837 -0.49751 0.018473 -0.0011807 NaN 3.5965 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 920750 + 57654 17855 38424 39300 -0.14645193743558593 SDEGRYIEYI 10 Unmodified _SDEGRYIEYI_ 0 0 0 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 ENSG00000151229|ENST00000280871|SLC2A13 MSMS AL20221201_MKP_PDAC_01 4 415.5311279296875 3 415.531304 1243.57208 NaN NaN NaN NaN NaN NaN NaN 16.903 1 14.346 13.846 14.846 -2.557 0 0 0 0.97302 1 8794 8794 1.7423 0 1 57655 6098 38425 39301 67320 67320 -0.039961048070381366 SDELSCGPDP 10 Unmodified _SDELSCGPDP_ 0 0 0 REV__ENST00000327158.4_1_17:904338-904425:+|nuORF REV__ENST00000327158.4_1_17:904338-904425:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2044677734375 2 510.202947 1018.39134 0.25783 0.00013155 0.84998 0.00043366 1.1078 0.00056521 510.2031023886932 46.916 0.34351 46.916 46.718 47.062 0 28 16 2 0 0 0 0.62068 1 25604 25604 10.074 2.7847 1 7590700 + 57656 25570 38426 39302 67321 67321 -0.11711946455409361 SDEQRERENEA 11 Unmodified _SDEQRERENEA_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8688049316406 3 454.867526 1361.58075 NaN NaN NaN NaN NaN NaN NaN 2.9498 1 2.9498 2.4498 3.4498 0 0 0 0 0.9435 1 1430 1430 0 0 1 57657 5851 38427 39303 67322 67322 -0.0855778290847411 SDERNKTFLH 10 Unmodified _SDERNKTFLH_ 0 0 0 ENST00000510962.1_1_5:180236074-180237877:-|nuORF ENST00000510962.1_1_5:180236074-180237877:-|nuORF ENST00000510962.1_1_5:180236074-180237877:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5445861816406 3 416.210676 1245.6102 -0.49914 -0.00020775 -0.19003 -7.9093E-05 -0.68918 -0.00028684 416.210692859602 19.372 0.10946 19.395 19.33 19.439 0.023106 11 8 2 0 0 0 0.71123 1 9764 9764 0.69767 0 1 533590 57658 14598 38428 39304 67323 67323 -0.0027817410170882795 SDESDESESEE 11 Unmodified _SDESDESESEE_ 0 0 0 REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF REV__ENST00000496524.5_1_2:110922048-110962545:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7095947265625 2 621.710041 1241.40553 -0.37499 -0.00023314 -1.6925 -0.0010522 -2.0675 -0.0012854 621.7095301955576 34.549 0.25418 34.549 34.402 34.656 0 36 12 4 0 0 0 0.65108 1 18181 18181 8.7454 3.4485 1 3624900 + 57659 20691 38429 39305 67324 67324 -0.2055166728405311 SDEWDCSYV 9 Unmodified _SDEWDCSYV_ 0 0 0 nc|ENSG00000197324|Q7Z4F1-2|LRP10;ENSG00000197324|ENST00000359591|LRP10 nc|ENSG00000197324|Q7Z4F1-2|LRP10 nc|ENSG00000197324|Q7Z4F1-2|LRP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.4723510742188 3 368.471057 1102.39134 NaN NaN NaN NaN NaN NaN NaN 51.311 1 51.311 50.811 51.811 0 0 0 0 0.84564 1 28329 28329 1.0715 0.29493 1 57660 9941 38430 39306 67325 67325 -0.15575946455419398 SDFDMAEY 8 Unmodified _SDFDMAEY_ 0 0 0 REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B REV__nc|ENSG00000155846|Q86YN6-6|PPARGC1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.1800842285156 2 489.181483 976.348413 -0.54656 -0.00026737 -1.0654 -0.00052117 -1.612 -0.00078854 489.1808158735252 27.556 0.26944 27.556 27.41 27.679 0 33 12 4 0 0 0 0.80143 1 14169 14169 5.7604 0 1 3602100 + 57661 21292 38431 39307 67326 67326 -0.14070716512833314 SDFEESDLEED 11 Unmodified _SDFEESDLEED_ 0 0 0 REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82 REV__nc|ENSG00000149231|Q8N4S0-2|CCDC82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.1682739257812 3 438.833377 1313.4783 0.55445 0.00024331 0.43018 0.00018878 0.98463 0.00043209 439.1678189289662 82.697 0.2608 82.2 81.964 82.224 -0.49751 18 10 3 0 0 0 0.74203 1 45264 45264 0.08335 0 1 783640 + 57662 28434 38432 39308 67327 67327 -0.16589913490611252 SDFYYDRSTM 10 Unmodified _SDFYYDRSTM_ 0 0 0 REV__ENST00000261252.4_1_12:3649876-3661973:+|nuORF REV__ENST00000261252.4_1_12:3649876-3661973:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.7630004882812 2 642.763703 1283.51285 -0.45103 -0.0002899 -0.829 -0.00053285 -1.28 -0.00082276 642.7632108045025 33.986 0.45173 33.795 33.521 33.972 -0.19131 53 17 4 0 0 0 0.46514 2 17761 17663;17761 18.146 4.2403 1 6464400 + 57663 18738 38433 39309 67328;67329 67329 -0.11756324092903014 SDGCCGRGSGC 11 Unmodified _SDGCCGRGSGC_ 0 0 0 REV__ENSG00000169509|ENST00000368790|CRCT1 REV__ENSG00000169509|ENST00000368790|CRCT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.1647338867188 2 501.165318 1000.31608 NaN NaN NaN NaN NaN NaN NaN 103.22 1 103.22 102.72 103.72 0 0 0 0 0.9435 1 56904 56904 0 0 1 + 57664 22406 38434 39310 67330 67330 -0.1840615045911136 SDGCSGCC 8 Unmodified _SDGCSGCC_ 0 0 0 REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28 REV__nc|ENSG00000159733|Q9HCC9-5|ZFYVE28 MSMS AL20221201_MKP_PDAC_01 4 366.2615966796875 2 366.093299 730.172045 NaN NaN NaN NaN NaN NaN NaN 108.97 1 102.79 102.29 103.29 -6.1757 0 0 0 0.97444 1 72798 72798 0 0 1 + 57665 21498 38435 39311 67331 67331 -0.20383372219259854 SDGGGGSGGR 10 Unmodified _SDGGGGSGGR_ 0 0 0 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 806.3394165039062 1 806.338734 805.331458 1.1071 0.00089273 -0.22838 -0.00018415 0.87876 0.00070858 806.338180620397 102 0.07412 95.822 95.78 95.854 -6.1757 5 3 2 0 0 0 0.64628 1 68480 68480 8.7454 2.5396 1 5907400 + 57666 21605 38436 39312 67332 67332 -0.07899456283746531 SDGNDAEPS 9 Unmodified _SDGNDAEPS_ 0 0 0 ENST00000517974.1_1_8:117671170-117767912:-|nuORF ENST00000517974.1_1_8:117671170-117767912:-|nuORF ENST00000517974.1_1_8:117671170-117767912:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.169921875 2 446.169961 890.325369 0.75874 0.00033853 -0.39958 -0.00017828 0.35916 0.00016025 446.1696776191177 68.032 0.67159 61.856 61.499 62.17 -6.1757 92 39 3 0 0 0 0.59218 1 44218 44218 1.8442 1.0506 1 107470000 57667 14684 38437 39313 67333 67333 -0.12418019305937378 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.7163391113281 2 442.716685 883.418816 -0.065401 -2.8954E-05 -0.38477 -0.00017035 -0.45017 -0.0001993 442.71645066265245 40.624 0.26721 40.624 40.491 40.758 0 46 14 4 0 0 0 0.5953 1 21823 21823 26.341 11.76 1 40095000 + 57668 24790 38438 39314 67334 67334 -0.027556303421874873 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7167663574219 2 442.716685 883.418816 0.28578 0.00012652 -0.72666 -0.0003217 -0.44088 -0.00019519 442.71649760943063 40.982 0.46649 40.679 40.397 40.863 -0.30304 47 22 3 0 0 0 0.5953 1 21663 21663 26.341 11.76 1 9416200 + 57669 24790 38438 39314 67335 67335 -0.027556303421874873 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7169189453125 2 442.716685 883.418816 0.51984 0.00023014 -0.11019 -4.8784E-05 0.40965 0.00018136 442.7167153184858 45.19 0.58921 40.338 40.083 40.672 -4.852 107 39 3 0 0 0 0.35156 3 27595 27595;27734;27881 49.669 23.328 1 88847000 + 57670 24790 38438 39314 67336;67337;67338 67336 -0.027556303421874873 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.716685 883.418816 -0.065401 -2.8954E-05 -0.38477 -0.00017035 -0.45017 -0.0001993 442.71645066265245 40.624 0.26721 40.624 40.491 40.758 0 0.076629 -3.7101E-05 NaN 49.669 46 14 4 NaN NaN NaN NaN 0 NaN NaN 0 40095000 + 57671 24790 38438 39314 -0.027556303421874873 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 442.716685 883.418816 0.28578 0.00012652 -0.72666 -0.0003217 -0.44088 -0.00019519 442.71649760943063 40.982 0.46649 40.679 40.397 40.863 -0.30304 0.13213 -0.00033982 NaN 49.669 47 22 3 NaN NaN NaN NaN 0 NaN NaN 0 9416200 + 57672 24790 38438 39314 -0.027556303421874873 SDHGLWGL 8 Unmodified _SDHGLWGL_ 0 0 0 REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF REV__ENST00000226091.2_1_17:7613381-7613660:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 442.716685 883.418816 0.51984 0.00023014 -0.11019 -4.8784E-05 0.40965 0.00018136 442.7167153184858 45.19 0.58921 40.338 40.083 40.672 -4.852 -0.20876 0.00020602 NaN 49.669 107 39 3 NaN NaN NaN NaN 0 NaN NaN 0 88847000 + 57673 24790 38438 39314 -0.027556303421874873 SDHSETFYEC 10 Unmodified _SDHSETFYEC_ 0 0 0 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 ENSG00000254656|ENST00000649591|RTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.7273559570312 2 609.22441 1216.43427 1.1734 0.00071489 -0.13204 -8.0441E-05 1.0414 0.00063445 609.2243877244902 47.071 0.34407 47.037 46.919 47.263 -0.033421 59 17 4 0 0 0 0.71123 1 25323 25323 1.6526 0.17072 1 48929000 57674 10779 38439 39315 67339 67339 -0.16529176397966694 SDHSKDSESY 10 Unmodified _SDHSKDSESY_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7344360351562 2 577.733457 1153.45236 NaN NaN NaN NaN NaN NaN NaN 32.77 1 32.77 32.27 33.27 0 0 0 0 0.24996 1 17145 17145 39.95 17.213 1 57675 3126 38440 39316 67340 67340 -0.11822718151597655 SDIPSFELY 9 Unmodified _SDIPSFELY_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7562255859375 2 535.755672 1069.49679 0.56032 0.0003002 0.13469 7.2159E-05 0.69501 0.00037236 535.7558194045168 73.008 0.49106 73.008 72.779 73.271 0 49 22 3 0 0 0 0.49272 1 40691 40691 7.9102 0 1 2442300 + 57676 21382 38441 39317 67341 67341 -0.03517662267472588 SDIPSFELY 9 Unmodified _SDIPSFELY_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.75634765625 2 535.755672 1069.49679 0.62013 0.00033224 -0.19516 -0.00010456 0.42496 0.00022768 535.755402218209 73.52 0.72362 73.044 72.804 73.527 -0.47588 74 33 4 0 0 0 0.30562 2 40152 40152;40256 16.942 16.942 1 7338200 + 57677 21382 38441 39317 67342;67343 67342 -0.03517662267472588 SDIPSFELY 9 Unmodified _SDIPSFELY_ 0 0 0 REV__ENSG00000157423|ENST00000393567|HYDIN REV__ENSG00000157423|ENST00000393567|HYDIN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.755672 1069.49679 0.56032 0.0003002 0.13469 7.2159E-05 0.69501 0.00037236 535.7558194045168 73.008 0.49106 73.008 72.779 73.271 0 -0.018124 0.0001907 NaN 16.942 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 2442300 + 57678 21382 38441 39317 -0.03517662267472588 SDKELPWY 8 Unmodified _SDKELPWY_ 0 0 0 REV__ENSG00000169410|ENST00000618819|PTPN9 REV__ENSG00000169410|ENST00000618819|PTPN9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.280029296875 2 519.250557 1036.48656 0.454 0.00023574 -1.2497 -0.0006489 -0.79568 -0.00041316 519.2504340357414 59.205 0.4398 59.205 59.004 59.443 0 24 18 2 0 0 0 8.7369 1 33028 33028 4.756 0 1 2359300 + 57679 22398 38442 39318 67344 67344 -0.03022225202039408 SDKWIWLILF 10 Unmodified _SDKWIWLILF_ 0 0 0 REV__ENSG00000183695|ENST00000329773|MRGPRX2 REV__ENSG00000183695|ENST00000329773|MRGPRX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.9197082519531 3 440.916541 1319.72779 1.1145 0.00049138 0.0017607 7.7631E-07 1.1162 0.00049216 441.2497339889469 94.92 0.19507 88.745 88.677 88.872 -6.1757 13 10 2 0 0 0 0.5543 1 62878 62878 13.519 6.8952 1 8062600 + 57680 23368 38443 39319 67345 67345 0.08072010505043181 SDLDGVAF 8 Unmodified _SDLDGVAF_ 0 0 0 REV__ENSG00000198398|ENST00000354905|TMEM207 REV__ENSG00000198398|ENST00000354905|TMEM207 MSMS AL20221201_MKP_PDAC_01 4 412.19189453125 2 412.195251 822.375948 NaN NaN NaN NaN NaN NaN NaN 22.758 1 19.98 19.48 20.48 -2.7784 0 0 0 0.97348 1 12263 12263 5.7604 0 1 + 57681 24016 38444 39320 67346 67346 -0.04234445190286351 SDLRFLEKV 9 Unmodified _SDLRFLEKV_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8143920898438 2 553.813856 1105.61316 0.43238 0.00023946 -0.049799 -2.7579E-05 0.38258 0.00021188 553.8139327906002 62.857 0.30872 62.835 62.66 62.969 -0.021614 32 15 3 0 0 0 0.040683 1 34365 34365 49.554 3.8547 1 5714700 + 57682 21419 38445 39321 67347 67347 0.06457701023077789 SDLRFLEKV 9 Unmodified _SDLRFLEKV_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 553.813856 1105.61316 0.436 0.00024147 -0.48893 -0.00027078 -0.052929 -2.9313E-05 553.8140962658659 62.814 0.23997 62.814 62.655 62.895 0 0.021684 -0.00058487 NaN 49.554 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 713690 + 57683 21419 38445 39321 0.06457701023077789 SDLRFLEKV 9 Unmodified _SDLRFLEKV_ 0 0 0 REV__ENSG00000158125|ENST00000379416|XDH REV__ENSG00000158125|ENST00000379416|XDH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.813856 1105.61316 0.43238 0.00023946 -0.049799 -2.7579E-05 0.38258 0.00021188 553.8139327906002 62.857 0.30872 62.835 62.66 62.969 -0.021614 0.042841 -9.8475E-05 NaN 49.554 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 5714700 + 57684 21419 38445 39321 0.06457701023077789 SDMLVIEAIL 10 Unmodified _SDMLVIEAIL_ 0 0 0 ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3 ENSG00000013375|ENST00000513973|PGM3 ENSG00000013375|ENST00000513973|PGM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.30419921875 2 552.304475 1102.5944 0.447 0.00024688 -1.6236 -0.00089672 -1.1766 -0.00064984 552.303669531695 99.639 0.11832 99.481 99.407 99.525 -0.1575 6 3 2 0 0 0 0.63399 1 54404 54404 9.3831 3.1773 1 1733400 57685 473 38446 39322 67348 67348 0.047204033370235265 SDNDDSDCPY 10 Unmodified _SDNDDSDCPY_ 0 0 0 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 nc|ENSG00000080493|Q9Y6R1-4|SLC4A4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.767578125 2 565.682575 1129.3506 0.89107 0.00050406 1.1882 0.00067216 2.0793 0.0011762 565.6833645577816 45.661 0.32412 40.706 40.524 40.848 -4.9549 28 21 2 0 0 0 0.23981 1 28055 28055 0 0 1 12720000 57686 1297 38447 39323 67349 67349 -0.20890332565659264 SDNGKNEPL 9 Unmodified _SDNGKNEPL_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2;ENST00000405223.6_1_2:43871812-43968195:+|nuORF;nc|ENSG00000152527|Q8IVE3-3|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7355651855469 2 487.232896 972.451239 0.52036 0.00025354 0.84162 0.00041006 1.362 0.0006636 487.2333380070949 57.596 0.37537 57.596 57.419 57.794 0 28 18 2 0 0 0 0.25681 1 32053 32053 19.257 4.6753 1 6556900 57687 6195 38448 39324 67350 67350 -0.03608887729842536 SDPFTHLAP 9 Unmodified _SDPFTHLAP_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7427978515625 2 492.742899 983.471246 0.1185 5.8392E-05 0.62203 0.0003065 0.74054 0.00036489 492.74296392232714 39.941 0.73762 39.941 39.595 40.333 0 113 36 4 0 0 0 0.06187 2 21296 21296;21404 42.095 15.211 1 18571000 57688 1865 38449 39325 67351;67352 67351 -0.02115091999246488 SDPFTHLAP 9 Unmodified _SDPFTHLAP_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7430114746094 2 492.742899 983.471246 0.59045 0.00029094 0.25077 0.00012356 0.84121 0.0004145 492.74284494907863 40.233 0.69364 39.935 39.649 40.343 -0.29716 74 32 3 0 0 0 0.06187 3 21171 21171;21271;21383 42.095 10.954 1 4590300 57689 1865 38449 39325 67353;67354;67355 67353 -0.02115091999246488 SDPFTHLAP 9 Unmodified _SDPFTHLAP_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7435913085938 2 492.742899 983.471246 0.7 0.00034492 0.64737 0.00031899 1.3474 0.00066391 492.7433417916805 45.909 0.8001 40.954 40.569 41.369 -4.9549 127 53 4 0 0 0 0.06187 1 28323 28323 42.095 11.87 1 72289000 57690 1865 38449 39325 67356 67356 -0.02115091999246488 SDPGWADSLF 10 Unmodified _SDPGWADSLF_ 0 0 0 ENSG00000163145|ENST00000444304|C1QTNF7;nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7 ENSG00000163145|ENST00000444304|C1QTNF7 ENSG00000163145|ENST00000444304|C1QTNF7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.5245666503906 3 365.497823 1093.47164 1.1965 0.00043733 3.5906 0.0013123 4.7871 0.0017497 365.49928696273366 26.773 0.24572 23.736 23.57 23.816 -3.0365 18 12 2 0 0 0 0.23325 1 14691 14691 5.7834 0.88642 1 6519200 57691 6959 38450 39326 67357 67357 -0.071357170700594 SDPIIYTLE 9 Unmodified _SDPIIYTLE_ 0 0 0 nc|ENSG00000174837|Q14246-3|ADGRE1;nc|ENSG00000174837|Q14246-4|ADGRE1;nc|ENSG00000174837|Q14246-5|ADGRE1;nc|ENSG00000174837|Q14246-2|ADGRE1;ENSG00000174837|ENST00000312053|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 nc|ENSG00000174837|Q14246-3|ADGRE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7716674804688 2 525.771322 1049.52809 NaN NaN NaN NaN NaN NaN NaN 70.96 1 70.96 70.46 71.46 0 0 0 0 0.85447 1 39534 39534 1.8442 1.0506 1 57692 16394 38451 39327 67358 67358 0.005309107666334967 SDPSIESFIF 10 Unmodified _SDPSIESFIF_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9 REV__ENSG00000154258|ENST00000340001|ABCA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2721557617188 2 571.274229 1140.53391 0.27637 0.00015788 -3.5882 -0.0020498 -3.3118 -0.001892 571.2728747811113 65.446 0.30328 65.446 65.32 65.624 0 37 11 5 0 0 0 0.60623 1 36492 36492 10.824 2.0785 1 2726100 + 57693 21218 38452 39328 67359 67359 -0.030739907217139262 SDPVEVIPV 9 Unmodified _SDPVEVIPV_ 0 0 0 ENST00000581216.5_2_17:29231492-29233241:-|nuORF ENST00000581216.5_2_17:29231492-29233241:-|nuORF ENST00000581216.5_2_17:29231492-29233241:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7794494628906 2 477.760758 953.506963 0.54993 0.00026273 -0.41075 -0.00019624 0.13918 6.6495E-05 477.7606370272472 74.128 0.39674 74.128 73.945 74.342 0 28 18 2 0 0 0 0.20727 1 41272 41272 7.9102 3.1541 1 512980 57694 15561 38453 39329 67360 67360 0.0283494545776648 SDSCAVSF 8 Unmodified _SDSCAVSF_ 0 0 0 ENST00000374875.5_1_10:33468781-33468847:-|nuORF ENST00000374875.5_1_10:33468781-33468847:-|nuORF ENST00000374875.5_1_10:33468781-33468847:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.1660461425781 2 408.165636 814.316719 0.14374 5.8672E-05 2.3031 0.00094005 2.4469 0.00099872 408.16664135408445 54.838 0.29869 54.371 54.222 54.52 -0.46664 22 14 2 0 0 0 0.80676 1 29728 29728 2.5775 1.7838 1 2561600 57695 12463 38454 39330 67361 67361 -0.09786664476109763 SDSEDDDSSD 10 Unmodified _SDSEDDDSSD_ 0 0 0 REV__nc|ENSG00000198000|Q76FK4-2|NOL8 REV__nc|ENSG00000198000|Q76FK4-2|NOL8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.1654663085938 2 536.16527 1070.31599 NaN NaN NaN NaN NaN NaN NaN 26.198 1 26.225 25.725 26.725 0.026951 0 0 0 1.0061 1 13584 13584 0 0 1 + 57696 23977 38455 39331 67362 67362 -0.21635877172798246 SDSHPSICRL 10 Unmodified _SDSHPSICRL_ 0 0 0 REV__ENSG00000183960|ENST00000328405|KCNH8 REV__ENSG00000183960|ENST00000328405|KCNH8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.2955932617188 2 557.769123 1113.52369 0.51478 0.00028713 -0.10806 -6.0272E-05 0.40672 0.00022686 557.76903478932 39.855 0.40067 35.326 35.029 35.429 -4.5294 43 25 2 0 0 0 0.23325 1 23619 23619 10.074 0 1 37875000 + 57697 23389 38456 39332 67363 67363 -0.02852876927931902 SDSIHYQMV 9 Unmodified _SDSIHYQMV_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.744873046875 2 540.244949 1078.47534 0.72682 0.00039266 0.64109 0.00034635 1.3679 0.000739 540.2453642490938 35.611 0.28385 31.418 31.286 31.57 -4.1928 23 17 2 0 0 0 0.17718 1 20736 20736 20.454 4.3045 1 9643500 57698 4010 38457 39333 67364 67364 -0.060753705678507686 SDSSRRETSTD 11 Unmodified _SDSSRRETSTD_ 0 0 0 REV__nc|ENSG00000101199|Q8N6T3-5|ARFGAP1 REV__nc|ENSG00000101199|Q8N6T3-5|ARFGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.7734985351562 2 620.773645 1239.53274 NaN NaN NaN NaN NaN NaN NaN 96.676 1 96.371 95.871 96.871 -0.30472 0 0 0 0.9435 1 52795 52795 0 0 1 + 57699 18145 38458 39334 67365 67365 -0.07744856828571756 SDTFEGWV 8 Unmodified _SDTFEGWV_ 0 0 0 ENSG00000027075|ENST00000332981|PRKCH ENSG00000027075|ENST00000332981|PRKCH ENSG00000027075|ENST00000332981|PRKCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.4048461914062 1 940.404689 939.397412 0.64888 0.00061021 -1.3507 -0.0012702 -0.70185 -0.00066002 940.4041117297818 74.468 0.19994 73.992 73.887 74.087 -0.47588 11 8 2 0 0 0 0.6895 1 40780 40780 18.135 4.6271 1 636550 57700 565 38459 39335 67366 67366 -0.07471060161560672 SDTPMCHLLY 10 Unmodified _SDTPMCHLLY_ 0 0 0 REV__ENSG00000155561|ENST00000285968|NUP205 REV__ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.845458984375 3 393.843948 1178.51002 1.0116 0.00039841 2.8144 0.0011084 3.826 0.0015068 393.8455634833945 79.768 0.33276 79.278 79.096 79.428 -0.48932 27 14 3 0 0 0 0.69377 1 43701 43701 3.5871 0.85186 1 1179000 + 57701 21275 38460 39336 67367 67367 -0.07209870751376002 SDTSDHTE 8 Unmodified _SDTSDHTE_ 0 0 0 ENST00000567216.5_1_16:587614-588244:+|nuORF ENST00000567216.5_1_16:587614-588244:+|nuORF ENST00000567216.5_1_16:587614-588244:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1701354980469 2 446.169961 890.325369 0.75874 0.00033853 -0.39958 -0.00017828 0.35916 0.00016025 446.1696776191177 68.032 0.67159 61.856 61.499 62.17 -6.1757 92 39 3 0 0 0 0.80992 1 44368 44368 0.69038 0 1 107470000 57702 15433 38461 39337 67368 67368 -0.12418019305937378 SDTSPYRFIL 10 Unmodified _SDTSPYRFIL_ 0 0 0 REV__ENSG00000198092|ENST00000356291|TMPRSS11F REV__ENSG00000198092|ENST00000356291|TMPRSS11F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.8121337890625 2 599.808771 1197.60299 2.7076 0.001624 2.4396 0.0014633 5.1472 0.0030873 599.8102484305642 99.773 0.35024 99.736 99.639 99.989 -0.036301 43 12 5 0 0 0 0.33553 1 55416 55416 25.399 0 1 38827000 + 57703 23989 38462 39338 67369 67369 0.01209093297848085 SDTSPYRFIL 10 Unmodified _SDTSPYRFIL_ 0 0 0 REV__ENSG00000198092|ENST00000356291|TMPRSS11F REV__ENSG00000198092|ENST00000356291|TMPRSS11F MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 599.808771 1197.60299 0.36761 0.0002205 2.9827 0.001789 3.3503 0.0020095 599.8104567556884 99.868 0.31297 99.71 99.613 99.926 -0.15751 -0.012914 0.00036592 NaN 25.399 27 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7590800 + 57704 23989 38462 39338 0.01209093297848085 SDVLQTHNAAF 11 Unmodified _SDVLQTHNAAF_ 0 0 0 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7926635742188 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.31454 2 50787 50787;51162 26.021 2.0001 1 114760000 57705 16073 38463 39339 67370;67371 67370 -0.019972653673448804 SDVRDENDLER 11 Unmodified _SDVRDENDLER_ 0 0 0 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.3099975585938 2 674.310394 1346.60624 NaN NaN NaN NaN NaN NaN NaN 91.672 1 91.672 91.172 92.172 0 0 0 0 0.9435 1 50696 50696 0 0 1 + 57706 21129 38464 39340 67372 67372 -0.05320308386126271 SDVSLTACKV 10 Carbamidomethyl (C) _SDVSLTAC(Carbamidomethyl (C))KV_ SDVSLTAC(1)KV SDVSLTAC(59)KV 0 1 0 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000494367.1_1_6:29976031-29977313:+|nuORF;ENST00000496081.5_1_6:29912792-29913229:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2737426757812 2 540.273706 1078.53286 NaN NaN NaN NaN NaN NaN NaN 34.69 1 34.69 34.19 35.19 0 0 0 0 0.042083 1 18295 18295 59.368 21.193 1 57707 10398 38465 39341 67373 67373 937 -0.003265283622795323 SDWLWKIIY 9 Unmodified _SDWLWKIIY_ 0 0 0 ENST00000367350.4_1_1:200583518-200584527:-|nuORF ENST00000367350.4_1_1:200583518-200584527:-|nuORF ENST00000367350.4_1_1:200583518-200584527:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5521545410156 3 408.553492 1222.63865 NaN NaN NaN NaN NaN NaN NaN 15.636 1 15.622 15.122 16.122 -0.014067 0 0 0 0.85737 1 7685 7685 0.26902 0 1 57708 12233 38466 39342 67374 67374 0.03623175545521917 SDWPGRGL 8 Unmodified _SDWPGRGL_ 0 0 0 REV__ENSG00000175206|ENST00000376480|NPPA REV__ENSG00000175206|ENST00000376480|NPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2230834960938 2 444.222134 886.429715 1.6339 0.00072583 0.61081 0.00027133 2.2447 0.00099717 444.2223638544905 50.026 0.40496 49.977 49.805 50.21 -0.048828 52 19 4 0 0 0 0.80676 1 27049 27049 2.5775 0 1 15748000 + 57709 22850 38467 39343 67375 67375 -0.018042279678979867 SDWPPIYGWHE 11 Unmodified _SDWPPIYGWHE_ 0 0 0 REV__ENST00000410085.5_1_7:143053645-143056840:-|nuORF REV__ENST00000410085.5_1_7:143053645-143056840:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.8753662109375 3 462.875293 1385.60405 0.62928 0.00029128 -0.37978 -0.00017579 0.2495 0.00011549 462.87542279210396 18.174 0.32357 15.552 15.386 15.709 -2.6215 75 24 5 0 0 0 0.73115 1 9625 9625 0.45452 0.12525 1 9668200 + 57710 26708 38468 39344 67376 67376 -0.0733269233323881 SDYFQAPSDY 10 Unmodified _SDYFQAPSDY_ 0 0 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 596.7451171875 2 596.743293 1191.47203 NaN NaN NaN NaN NaN NaN NaN 25.865 1 22.914 22.414 23.414 -2.9511 0 0 0 0.83454 1 14194 14194 10.8 0.72558 1 57711 2597 38469 39345 67377 67377 -0.11604342140844892 SDYQIFQEL 9 Unmodified _SDYQIFQEL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.773681640625 2 571.771854 1141.52915 0.27936 0.00015973 3.2085 0.0018345 3.4879 0.0019943 571.7738571670341 65.029 0.21568 65.029 64.901 65.117 0 26 10 3 0 0 0 0.34999 1 36266 36266 14.838 1.7958 1 3843500 57712 3863 38470 39346 67378 67378 -0.03594874864461417 SEANEENDNI 10 Unmodified _SEANEENDNI_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MSMS AL20221201_MKP_PDAC_01 4 378.8221435546875 3 378.823035 1133.44728 NaN NaN NaN NaN NaN NaN NaN 39.978 1 35.449 34.949 35.949 -4.5294 0 0 0 0.97302 1 23807 23807 1.7423 0 1 57713 4971 38471 39347 67379 67379 -0.11411022014226546 SEDDDCDDDD 10 Unmodified _SEDDDCDDDD_ 0 0 0 ENSG00000189269|ENST00000317749|DRICH1 ENSG00000189269|ENST00000317749|DRICH1 ENSG00000189269|ENST00000317749|DRICH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.1481323242188 2 572.148762 1142.28297 NaN NaN NaN NaN NaN NaN NaN 15.586 1 15.592 15.092 16.092 0.0057774 0 0 0 1.0061 1 7774 7774 0 0 1 57714 9738 38472 39348 67380 67380 -0.2824782728714581 SEDDEDCYGNY 11 Unmodified _SEDDEDCYGNY_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1309.858154296875 1 1309.41612 1308.40884 0.64101 0.00083935 0.3021 0.00039557 0.94311 0.0012349 1310.4208511161398 78.083 0.13976 78.136 78.037 78.177 0.052452 10 5 3 0 0 0 0.30605 1 43127 43127 0 0 1 2603900 57715 5293 38473 39349 67381 67381 -0.23302695711049637 SEDDVLSSSSC 11 Unmodified _SEDDVLSSSSC_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.1796264648438 3 376.816893 1127.42885 NaN NaN NaN NaN NaN NaN NaN 65.449 1 64.965 64.465 65.465 -0.48428 0 0 0 0.94148 1 35722 35722 1.4551 0.94916 1 57716 16078 38474 39350 67382 67382 -0.1297689998043552 SEDGEQFDNM 10 Unmodified _SEDGEQFDNM_ 0 0 0 ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.1454467773438 3 391.145121 1170.41353 0.4543 0.0001777 -0.39769 -0.00015556 0.056609 2.2142E-05 391.1450760807566 16.003 0.50624 13.446 13.285 13.791 -2.557 198 90 3 0 0 0 0.71123 1 8382 8382 0.69767 0.2894 1 11445000 57717 1915 38475 39351 67383 67383 -0.1648576677764595 SEDWTLNMEI 10 Unmodified _SEDWTLNMEI_ 0 0 0 nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;nc|ENSG00000175662|Q6ZVM7-5|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2;ENST00000537091.2_1_17:17772601-17875627:-|nuORF nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;ENST00000537091.2_1_17:17772601-17875627:-|nuORF nc|ENSG00000175662|Q6ZVM7-2|TOM1L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2732543945312 2 619.273903 1236.53325 1.1598 0.00071823 -0.055318 -3.4257E-05 1.1045 0.00068397 619.2741170968189 95.679 0.62506 89.503 89.071 89.696 -6.1757 85 37 3 0 0 0 0.62068 1 63479 63479 10.074 0.6908 1 46347000 57718 8535;14985 38476 39352 67384 67384 -0.07555153433077066 SEECGWDGLDC 11 Unmodified _SEECGWDGLDC_ 0 0 0 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2110595703125 2 607.210446 1212.40634 NaN NaN NaN NaN NaN NaN NaN 6.1881 1 6.1035 5.6035 6.6035 -0.08463 0 0 0 0.9435 1 3056 3056 0 0 1 57719 4577 38477 39353 67385 67385 -0.19136822649693386 SEECGWDGLDC 11 Unmodified _SEECGWDGLDC_ 0 0 0 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 ENSG00000134250|ENST00000256646|NOTCH2 MSMS AL20221201_MKP_PDAC_01 4 607.2118530273438 2 607.210446 1212.40634 NaN NaN NaN NaN NaN NaN NaN 2.1455 1 -0.33649 -0.83649 0.16351 -2.482 0 0 0 0.9435 1 1100 1100 0 0 1 57720 4577 38477 39353 67386 67386 -0.19136822649693386 SEEECWHLHDY 11 Unmodified _SEEECWHLHDY_ 0 0 0 ENSG00000186792|ENST00000336307|HYAL3;nc|ENSG00000243477|O43820-3|HYAL3 ENSG00000186792|ENST00000336307|HYAL3 ENSG00000186792|ENST00000336307|HYAL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.1900939941406 3 483.190953 1446.55103 0.73593 0.00035559 -0.82915 -0.00040064 -0.093221 -4.5044E-05 483.1903815842406 51.375 0.49806 51.375 51.167 51.665 0 42 22 3 0 0 0 0.74157 1 28385 28385 0.094841 0 1 1984400 57721 9505 38478 39354 67387 67387 -0.1543843817821653 SEEEILENPDL 11 Unmodified _SEEEILENPDL_ 0 0 0 nc|ENSG00000117906|Q14257-2|RCN2;ENSG00000117906|ENST00000394885|RCN2 nc|ENSG00000117906|Q14257-2|RCN2 nc|ENSG00000117906|Q14257-2|RCN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.5353088378906 3 429.869874 1286.58779 -0.33741 -0.00014504 -0.99334 -0.00042701 -1.3307 -0.00057205 429.8698787276953 36.897 0.24237 36.647 36.554 36.796 -0.2497 16 10 2 0 0 0 0.30558 1 19396 19396 2.4348 0 1 4487800 57722 3342 38479 39355 67388 67388 -0.04403863080642623 SEEIITPVY 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))SEEIITPVY_ 1 0 0 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7760009765625 2 546.776605 1091.53866 0.93557 0.00051155 -0.4099 -0.00022413 0.52567 0.00028742 546.7761836441855 88.738 0.60898 82.562 82.311 82.92 -6.1757 48 33 2 0 0 0 0.026094 1 58511 58511 57.471 30.588 1 12940000 57723 486 38480 39356 67389 67389 -0.00345106578947707 SEESGLLIFF 10 Unmodified _SEESGLLIFF_ 0 0 0 REV__ENST00000535170.5_1_7:99638839-99639052:+|nuORF REV__ENST00000535170.5_1_7:99638839-99639052:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2935791015625 2 571.292422 1140.57029 0.35857 0.00020485 1.3881 0.00079301 1.7467 0.00099786 571.2934110477304 90.902 0.41074 90.902 90.648 91.059 0 39 18 3 0 0 0 0.71123 1 50193 50193 1.6526 0 1 549220 + 57724 28519 38481 39357 67390 67390 0.005628861749983116 SEETREEL 8 Unmodified _SEETREEL_ 0 0 0 REV__nc|nan|Q49A92-4|C8orf34 REV__nc|nan|Q49A92-4|C8orf34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7312927246094 2 496.730186 991.445819 0.49217 0.00024447 1.3443 0.00066777 1.8365 0.00091224 496.7308063972834 53.292 0.29964 53.292 53.12 53.42 0 22 12 2 0 0 0 0.52622 1 29501 29501 32.305 1.6689 1 8183700 + 57725 21977 38482 39358 67391 67391 -0.050246113123193936 SEFCANFRDFR 11 Unmodified _SEFCANFRDFR_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.54345703125 3 464.543549 1390.60882 -0.19885 -9.2373E-05 -0.23308 -0.00010828 -0.43192 -0.00020065 464.543598328154 31.761 0.29959 31.791 31.606 31.906 0.030106 46 13 5 0 0 0 0.61059 1 16617 16617 5.8681 3.6154 1 27586000 + 57726 17517 38483 39359 67392 67392 -0.07086131462142475 SEFCANFRDFR 11 Unmodified _SEFCANFRDFR_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.3118286132812 2 696.311686 1390.60882 -0.11956 -8.3252E-05 -0.32991 -0.00022972 -0.44947 -0.00031297 696.3115447701322 31.757 0.23874 31.787 31.648 31.887 0.030106 22 10 3 0 0 0 0.5551 1 16637 16637 13.615 5.4593 1 5039500 + 57727 17517 38483 39359 67393 67393 -0.07086131462142475 SEFCANFRDFR 11 Unmodified _SEFCANFRDFR_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 464.543549 1390.60882 -0.061505 -2.8572E-05 0.56648 0.00026316 0.50498 0.00023459 464.543926112744 31.838 0.34291 31.709 31.548 31.891 -0.12915 -0.040867 0.00058038 NaN 5.8681 45 13 5 NaN NaN NaN NaN 0 NaN NaN 0 25275000 + 57728 17517 38483 39359 -0.07086131462142475 SEFCANFRDFR 11 Unmodified _SEFCANFRDFR_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 464.543549 1390.60882 -0.19885 -9.2373E-05 -0.23308 -0.00010828 -0.43192 -0.00020065 464.543598328154 31.761 0.29959 31.791 31.606 31.906 0.030106 0.040867 -0.00053391 NaN 5.8681 46 13 5 NaN NaN NaN NaN 0 NaN NaN 0 27586000 + 57729 17517 38483 39359 -0.07086131462142475 SEFELLRSY 9 Unmodified _SEFELLRSY_ 0 0 0 ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;ENST00000471751.5_1_3:125166625-125239024:-|nuORF ENSG00000114520|ENST00000251775|SNX4 ENSG00000114520|ENST00000251775|SNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.28955078125 2 572.287671 1142.56079 0.17903 0.00010246 2.8892 0.0016534 3.0682 0.0017559 572.2889591969418 38.276 0.20575 37.989 37.887 38.092 -0.28687 11 8 2 0 0 0 0.55144 1 20165 20165 4.3292 1.8308 1 1219000 57730 3044 38484 39360 67394 67394 -0.004788821105194074 SEFHFGPE 8 Unmodified _SEFHFGPE_ 0 0 0 REV__nc|ENSG00000105426|Q13332-4|PTPRS REV__nc|ENSG00000105426|Q13332-4|PTPRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.4032592773438 1 949.405023 948.397747 -0.88541 -0.00084061 0.16056 0.00015243 -0.72485 -0.00068818 949.4046104044236 55.259 0.28754 55.259 55.126 55.414 0 22 12 2 0 0 0 0.55032 1 30653 30653 30.225 30.225 1 3469600 + 57731 18424 38485 39361 67395 67395 -0.07851640441697327 SEFHLLKTMLL 11 Unmodified _SEFHLLKTMLL_ 0 0 0 ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.3718872070312 2 666.373223 1330.73189 NaN NaN NaN NaN NaN NaN NaN 90.938 1 90.443 89.943 90.943 -0.49457 0 0 0 0.93984 1 49713 49713 5.7319 4.0792 1 57732 5026 38486 39362 67396 67396 0.07975731936448938 SEFIIVITFHP 11 Unmodified _SEFIIVITFHP_ 0 0 0 REV__ENSG00000174206|ENST00000398055|KICS2 REV__ENSG00000174206|ENST00000398055|KICS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.8567504882812 2 651.858264 1301.70197 NaN NaN NaN NaN NaN NaN NaN 78.818 1 78.332 77.832 78.832 -0.48596 0 0 0 0.79635 1 43168 43168 12.241 1.4411 1 + 57733 22774 38487 39363 67397 67397 0.06319116262739044 SEFINILQDS 10 Unmodified _SEFINILQDS_ 0 0 0 REV__nc|ENSG00000080839|P28749-2|RBL1 REV__nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2903442382812 2 583.290411 1164.56627 0.0036601 2.1349E-06 -0.24562 -0.00014327 -0.24196 -0.00014113 583.2901773376973 70.193 0.29978 70.193 70.078 70.377 0 37 17 3 0 0 0 0.65773 1 39188 39188 7.609 0.50723 1 2310000 + 57734 17676 38488 39364 67398 67398 -0.009432033186840272 SEGAEGGD 8 Unmodified _SEGAEGGD_ 0 0 0 REV__ENSG00000165238|ENST00000427277|WNK2 REV__ENSG00000165238|ENST00000427277|WNK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1384887695312 2 361.13539 720.256227 -0.6531 -0.00023586 4.0906 0.0014773 3.4375 0.0012414 361.1387833283591 55.684 0.56644 55.684 55.461 56.028 0 213 43 6 0 0 0 0.74163 1 30964 30964 13.508 0 1 111100000 + 57735 21995 38489 39365 67399 67399 -0.11509058534829819 SEGHRAFHL 9 Unmodified _SEGHRAFHL_ 0 0 0 ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.264892578125 2 527.264865 1052.51518 NaN NaN NaN NaN NaN NaN NaN 86.205 1 85.702 85.202 86.202 -0.50318 0 0 0 0.84564 1 47170 47170 2.0598 0 1 57736 10464 38490 39366 67400 67400 -0.008980627822666065 SEGWTSLEL 9 Unmodified _SEGWTSLEL_ 0 0 0 ENST00000522197.1_1_8:122652185-122654912:+|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF ENST00000522197.1_1_8:122652185-122654912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2458190917969 2 511.245472 1020.47639 0.48176 0.0002463 -0.71503 -0.00036556 -0.23326 -0.00011926 511.2450555833315 67.323 0.26234 67.323 67.175 67.437 0 13 10 2 0 0 0 0.49272 1 37552 37552 7.9102 2.1497 1 633030 57737 14752 38491 39367 67401 67401 -0.03302832927295185 SEHNCQPYY 9 Unmodified _SEHNCQPYY_ 0 0 0 nc|ENSG00000047634|Q9UN30-1|SCML1;nc|ENSG00000047634|Q9UN30-2|SCML1;ENSG00000047634|ENST00000380041|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 nc|ENSG00000047634|Q9UN30-1|SCML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7247924804688 2 570.724381 1139.43421 0.72669 0.00041474 -0.027185 -1.5515E-05 0.6995 0.00039922 570.7249348049513 60.109 0.35812 60.109 59.943 60.301 0 60 15 6 0 0 0 0.49766 1 33479 33479 3.9444 0 1 11283000 57738 689 38492 39368 67402 67402 -0.1299313160732254 SEHWEEYL 8 Unmodified _SEHWEEYL_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1602172851562 3 364.82594 1091.45599 0.49503 0.0001806 1.3694 0.0004996 1.8644 0.00068019 364.8272843401606 84.094 0.43673 83.595 83.339 83.775 -0.49961 30 18 2 0 0 0 0.80676 1 45987 45987 1.6526 0.17072 1 961000 57739 4279 38493 39369 67403 67403 -0.08608003587096391 SEHYLVTLLY 10 Unmodified _SEHYLVTLLY_ 0 0 0 REV__ENSG00000061794|ENST00000081029|MRPS35 REV__ENSG00000061794|ENST00000081029|MRPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.3275756835938 2 619.326796 1236.63904 0.34749 0.00021521 1.1829 0.00073262 1.5304 0.00094783 619.3278398812544 78.56 0.19008 78.56 78.489 78.679 0 13 8 2 0 0 0 0.66569 1 43661 43661 6.7232 0 1 361440 + 57740 17334 38494 39370 67404 67404 0.030185504747350933 SEICDFYSL 9 Unmodified _SEICDFYSL_ 0 0 0 REV__ENSG00000171914|ENST00000636159|TLN2 REV__ENSG00000171914|ENST00000636159|TLN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3228759765625 2 538.733883 1075.45321 0.36693 0.00019768 1.3869 0.00074718 1.7538 0.00094486 538.734638954424 75.875 0.31635 75.398 75.235 75.551 -0.47713 19 13 2 0 0 0 0.19613 1 41592 41592 12.532 5.2423 1 828160 + 57741 22610 38495 39371 67405 67405 -0.08149595036252322 SEIEGNVTFH 10 Unmodified _SEIEGNVTFH_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7659912109375 2 566.767103 1131.51965 0.47945 0.00027174 -2.1653 -0.0012272 -1.6858 -0.00095548 566.7662288498435 63.571 0.39221 63.085 62.841 63.233 -0.48617 36 17 3 0 0 0 0.32072 1 34605 34605 26.268 3.1197 1 7851500 57742 9384 38496 39372 67406 67406 -0.04084643149985823 SEIESYNM 8 Unmodified _SEIESYNM_ 0 0 0 REV__ENSG00000113282|ENST00000411809|CLINT1 REV__ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7035827636719 2 486.702583 971.390612 0.26598 0.00012945 1.917 0.00093299 2.1829 0.0010624 486.7035237222642 66.306 0.39528 65.823 65.651 66.046 -0.48324 35 21 2 0 0 0 0.74163 1 36154 36154 13.508 0.97634 1 5999100 + 57743 18860 38497 39373 67407 67407 -0.0962274110445378 SEIFPLLPQ 9 Unmodified _SEIFPLLPQ_ 0 0 0 ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.777099609375 2 522.292225 1042.5699 0.38147 0.00019924 1.3797 0.0007206 1.7612 0.00091984 522.2933713384573 87.348 0.28434 86.844 86.708 86.992 -0.50423 19 11 2 0 0 0 0.18521 1 47737 47737 16.942 0 1 798100 57744 14851 38498 39374 67408 67408 0.050315112458065414 SEIKDFLSY 9 Unmodified _SEIKDFLSY_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-4|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENST00000492201.5_1_10:14962436-14970058:-|nuORF ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.279296875 2 551.276772 1100.53899 0.36188 0.0001995 1.3513 0.00074492 1.7131 0.00094441 551.2779412602979 63.486 0.30839 63 62.841 63.149 -0.48617 37 13 4 0 0 0 0.25681 1 34581 34581 19.257 3.4098 1 6158900 57745 6187 38499 39375 67409 67409 -0.0072568685909573105 SEIMGTRAHFK 11 Unmodified _SEIMGTRAHFK_ 0 0 0 REV__ENSG00000082458|ENST00000374360|DLG3 REV__ENSG00000082458|ENST00000374360|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2216186523438 3 426.220407 1275.63939 0.2621 0.00011171 1.0172 0.00043357 1.2793 0.00054528 426.22077843692944 25.838 0.13677 25.865 25.81 25.946 0.026951 16 8 3 0 0 0 0.69708 1 13390 13390 2.084 0 1 7324000 + 57746 17707 38500 39376 67410 67410 0.01259646922903812 SEIQRMVI 8 Unmodified _SEIQRMVI_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2689514160156 2 488.268227 974.521901 0.0054749 2.6732E-06 1.2611 0.00061578 1.2666 0.00061845 488.26903541134294 37.44 0.28846 37.169 37.015 37.303 -0.27133 14 11 2 0 0 0 0.79982 1 19698 19698 6.7232 0 1 1085300 57747 4098 38501 39377 67411 67411 0.03362114054118592 SEIYEFVTYP 10 Unmodified _SEIYEFVTYP_ 0 0 0 REV__nc|ENSG00000165695|Q96MA6-2|AK8 REV__nc|ENSG00000165695|Q96MA6-2|AK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.29638671875 2 624.295162 1246.57577 0.50655 0.00031624 1.4505 0.00090557 1.9571 0.0012218 624.2959459284718 72.306 0.40833 71.83 71.572 71.98 -0.47609 40 18 3 0 0 0 0.60623 1 39501 39501 10.824 3.5347 1 1332500 + 57748 22040 38502 39378 67412 67412 -0.03765435033187714 SEKALCDKDG 10 Unmodified _SEKALCDKDG_ 0 0 0 REV__ENSG00000167619|ENST00000301204|TMEM145 REV__ENSG00000167619|ENST00000301204|TMEM145 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.553955078125 2 533.247689 1064.48082 0.47769 0.00025473 -3.2743 -0.001746 -2.7966 -0.0014913 533.245923320007 30.527 0.15837 30.425 30.365 30.523 -0.10269 7 5 2 0 0 0 0.22154 1 15882 15882 16.149 5.3252 1 427270 + 57749 22228 38503 39379 67413 67413 -0.04883691776035448 SEKEKLLEANL 11 Unmodified _SEKEKLLEANL_ 0 0 0 REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2391357421875 3 425.23812 1272.69253 NaN NaN NaN NaN NaN NaN NaN 35.448 1 35.473 34.973 35.973 0.024967 0 0 0 0.71214 1 18741 18741 16.275 0 1 + 57750 30038 38504 39380 67414 67414 0.06709303186585203 SEKMEVLGY 9 Unmodified _SEKMEVLGY_ 0 0 0 ENST00000451424.1_1_1:20974977-20975394:-|nuORF ENST00000451424.1_1_1:20974977-20975394:-|nuORF ENST00000451424.1_1_1:20974977-20975394:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5078735351562 3 352.507442 1054.5005 -0.0037778 -1.3317E-06 0.97135 0.00034241 0.96757 0.00034108 352.50798039835956 65.285 0.33002 65.285 65.117 65.447 0 25 12 3 0 0 0 0.58466 1 36440 36440 1.1933 0.12188 1 1076500 57751 13521 38505 39381 67415 67415 -0.024573157652412192 SEKVISWY 8 Unmodified _SEKVISWY_ 0 0 0 REV__ENST00000436367.5_1_6:16658088-16761588:-|nuORF REV__ENST00000436367.5_1_6:16658088-16761588:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7590026855469 2 506.260925 1010.5073 0.72631 0.0003677 -1.5923 -0.00080613 -0.86602 -0.00043843 506.26163543491174 54.721 0.47762 48.856 48.656 49.134 -5.8653 74 29 4 0 0 0 0.67481 1 34921 34921 19.439 1.304 1 48877000 + 57752 27032 38506 39382 67416 67416 0.0024636517762246513 SELDNGPKEL 10 Unmodified _SELDNGPKEL_ 0 0 0 REV__ENSG00000232113|ENST00000417563|TEX50 REV__ENSG00000232113|ENST00000417563|TEX50 MSMS AL20221201_MKP_PDAC_01 4 551.2750854492188 2 551.274761 1100.53497 NaN NaN NaN NaN NaN NaN NaN 66.267 1 60.092 59.592 60.592 -6.1757 0 0 0 0.57227 1 43096 43096 22.736 2.2827 1 + 57753 24409 38507 39383 67417 67417 -0.01127776352791443 SELHFTHFTF 10 Unmodified _SELHFTHFTF_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5360717773438 3 422.536501 1264.58767 0.72434 0.00030606 -1.2454 -0.00052625 -0.5211 -0.00022018 422.53598785271106 58.168 0.27918 58.107 57.955 58.235 -0.060719 36 13 4 0 0 0 0.63089 1 31647 31647 9.544 1.0997 1 11700000 + 57754 19319 38508 39384 67418 67418 -0.03403773499348972 SELHFTHFTF 10 Unmodified _SELHFTHFTF_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.3004760742188 2 633.301113 1264.58767 0.74503 0.00047183 -0.086001 -5.4464E-05 0.65903 0.00041736 633.3003398566617 58.151 0.31907 58.09 57.955 58.274 -0.060719 36 15 3 0 0 0 0.30444 1 31648 31648 32.305 15.193 1 8899100 + 57755 19319 38508 39384 67419 67419 -0.03403773499348972 SELLFHWDVY 10 Unmodified _SELLFHWDVY_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.4830627441406 3 436.880156 1307.61864 NaN NaN NaN NaN NaN NaN NaN 67.523 1 67.523 67.023 68.023 0 0 0 0 0.98857 1 37652 37652 1.9064 0.57673 1 + 57756 19793 38509 39385 67420 67420 -0.022866201851002188 SELLPDWLSL 10 Unmodified _SELLPDWLSL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5447692871094 3 391.544773 1171.61249 -0.60786 -0.000238 1.2098 0.00047371 0.60198 0.0002357 391.54527966837037 17.309 0.21609 17.309 17.211 17.428 0 78 43 2 0 0 0 0.69377 1 8492 8492 1.7423 0 1 1141200 57757 7618 38510 39386 67421 67421 0.03354861583375168 SELLPDWLSL 10 Unmodified _SELLPDWLSL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.544773 1171.61249 -0.60786 -0.000238 1.2098 0.00047371 0.60198 0.0002357 391.54527966837037 17.309 0.21609 17.309 17.211 17.428 0 0 0 NaN 1.7423 78 43 2 NaN NaN NaN NaN 0 NaN NaN 0 1141200 57758 7618 38510 39386 0.03354861583375168 SELLPNGDLE 10 Unmodified _SELLPNGDLE_ 0 0 0 ENSG00000119772|ENST00000321117|DNMT3A;nc|ENSG00000119772|Q9Y6K1-3|DNMT3A ENSG00000119772|ENST00000321117|DNMT3A ENSG00000119772|ENST00000321117|DNMT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7710571289062 2 543.769311 1085.52407 0.85548 0.00046518 2.3298 0.0012669 3.1853 0.0017321 543.7695857006601 36.936 0.24592 32.653 32.455 32.701 -4.2835 19 14 2 0 0 0 0.36296 1 21645 21645 23.79 4.3508 1 3786900 57759 3467 38511 39387 67422 67422 -0.015271787270876303 SELQWLKRRKR 11 Unmodified _SELQWLKRRKR_ 0 0 0 nc|ENSG00000114948|O75077-2|ADAM23;nc|ENSG00000114948|O75077-3|ADAM23;ENSG00000114948|ENST00000264377|ADAM23 nc|ENSG00000114948|O75077-2|ADAM23 nc|ENSG00000114948|O75077-2|ADAM23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 750.4518432617188 2 750.449508 1498.88446 3.0524 0.0022907 -0.35618 -0.0002673 2.6962 0.0020234 750.4491633692663 97.11 1.1385 97.103 96.772 97.911 -0.007019 152 42 5 0 0 0 0.7453 4 53844 53844;53957;54066;54289 0 0 1 54465000 57760 16133 38512 39388 67423;67424;67425;67426 67423 0.15497688448022018 SELSDWCQV 9 Unmodified _SELSDWCQV_ 0 0 0 ENST00000374199.8_1_9:116053210-116053291:+|nuORF ENST00000374199.8_1_9:116053210-116053291:+|nuORF ENST00000374199.8_1_9:116053210-116053291:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2555541992188 2 533.729132 1065.44371 -0.057354 -3.0612E-05 -1.0097 -0.0005389 -1.067 -0.00056951 533.7267005707507 41.776 0.21253 41.776 41.689 41.901 0 17 10 2 0 0 0 0.19613 1 22529 22529 4.3292 0 1 2127600 57761 12437 38513 39389 67427 67427 -0.08639363321799465 SELVKYYLM 9 Unmodified _SELVKYYLM_ 0 0 0 REV__ENSG00000103479|ENST00000262133|RBL2 REV__ENSG00000103479|ENST00000262133|RBL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5343017578125 3 382.535221 1144.58383 NaN NaN NaN NaN NaN NaN NaN 21.312 1 21.326 20.826 21.826 0.013796 0 0 0 0.84369 1 10906 10906 1.1933 0.41681 1 + 57762 18307 38514 39390 67428 67428 0.01732420682560587 SELVQLHMQL 10 Unmodified _SELVQLHMQL_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5476989746094 3 399.881391 1196.62234 -0.43765 -0.00017501 -0.25725 -0.00010287 -0.6949 -0.00027788 399.8813172308119 29.152 0.11905 29.152 29.063 29.182 0 7 5 2 0 0 0 0.23896 1 15096 15096 1.7423 0 1 700510 57763 4224 38515 39391 67429 67429 0.031897263171231316 SEMDDFFCE 9 Unmodified _SEMDDFFCE_ 0 0 0 REV__ENSG00000001626|ENST00000003084|CFTR REV__ENSG00000001626|ENST00000003084|CFTR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.6925048828125 2 561.691358 1121.36816 NaN NaN NaN NaN NaN NaN NaN 15.779 1 15.784 15.284 16.284 0.0050564 0 0 0 0.85737 1 7880 7880 0.6015 0 1 + 57764 16929 38516 39392 67430 67430 -0.1876670856436249 SEMHRLSSAL 10 Unmodified _SEMHRLSSAL_ 0 0 0 ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5258483886719 3 377.525607 1129.55499 0.052852 1.9953E-05 0.33062 0.00012482 0.38347 0.00014477 377.5257014536953 39.807 0.31892 39.51 39.371 39.69 -0.29716 49 15 4 0 0 0 0.44373 1 20968 20968 12.175 0 1 18785000 57765 7971 38517 39393 67431 67431 -0.0046030389382849535 SEMQSRGHAK 10 Unmodified _SEMQSRGHAK_ 0 0 0 REV__ENSG00000120438|ENST00000321394|TCP1 REV__ENSG00000120438|ENST00000321394|TCP1 MSMS AL20221201_MKP_PDAC_01 4 377.5175170898438 3 377.517223 1129.52984 NaN NaN NaN NaN NaN NaN NaN 20.246 1 17.553 17.053 18.053 -2.693 0 0 0 0.94014 1 10777 10777 3.3196 0 1 + 57766 19242 38518 39394 67432 67432 -0.029743586964059432 SEMYMDRSDN 10 Unmodified _SEMYMDRSDN_ 0 0 0 REV__nc|ENSG00000104852|P08621-4|SNRNP70 REV__nc|ENSG00000104852|P08621-4|SNRNP70 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2387084960938 2 624.236995 1246.45944 NaN NaN NaN NaN NaN NaN NaN 7.115 1 7.115 6.615 7.615 0 0 0 0 1.0029 1 3411 3411 0.35063 0 1 + 57767 28639 38519 39395 67433 67433 -0.15393444867027029 SENEDENDF 9 Unmodified _SENEDENDF_ 0 0 0 REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.8004150390625 3 366.800119 1097.37853 NaN NaN NaN NaN NaN NaN NaN 4.0948 1 1.6129 1.1129 2.1129 -2.482 0 0 0 0.8622 1 2078 2078 0 0 1 + 57768 27760 38520 39396 67434 67434 -0.16626686313952632 SENEDENDF 9 Unmodified _SENEDENDF_ 0 0 0 REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.8006896972656 3 366.800119 1097.37853 NaN NaN NaN NaN NaN NaN NaN 9.8076 1 7.3257 6.8257 7.8257 -2.482 0 0 0 0.8622 1 4947 4947 0 0 1 + 57769 27760 38520 39396 67435 67435 -0.16626686313952632 SENEYFKI 8 Unmodified _SENEYFKI_ 0 0 0 nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB nc|ENSG00000114423|Q13191-3|CBLB nc|ENSG00000114423|Q13191-3|CBLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7472534179688 2 515.248015 1028.48148 0.041791 2.1533E-05 -0.92168 -0.00047489 -0.87989 -0.00045336 515.2475813285995 54.371 0.35846 53.905 53.765 54.124 -0.46664 31 18 2 0 0 0 0.77907 1 29555 29555 10.183 0 1 6994500 57770 3038 38521 39397 67436 67436 -0.03162529064661612 SENFEQLLLSQ 11 Unmodified _SENFEQLLLSQ_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5 REV__ENSG00000198734|ENST00000367797|F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 654.3265991210938 2 654.327524 1306.6405 -0.2604 -0.00017039 -2.4462 -0.0016006 -2.7066 -0.001771 654.3257051528693 55.172 0.23201 55.172 54.986 55.218 0 15 9 2 0 0 0 0.69316 1 30609 30609 4.897 0 1 1311200 + 57771 24048 38522 39398 67437 67437 -0.0005586022716670414 SENLLSLYL 9 Unmodified _SENLLSLYL_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7591552734375 2 526.28714 1050.55973 0.85951 0.00045235 1.8549 0.0009762 2.7144 0.0014286 526.2881450770394 49.706 0.19904 49.706 49.536 49.735 0 11 8 2 0 0 0 0.19205 1 27336 27336 10.074 0 1 1785600 57772 9210 38523 39399 67438 67438 0.03646903520575506 SENLMVEEYL 10 Unmodified _SENLMVEEYL_ 0 0 0 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5254211425781 3 409.525161 1225.55365 -0.78371 -0.00032095 1.3918 0.00056996 0.60806 0.00024901 409.52584899655085 30.543 0.1649 30.543 30.443 30.607 0 12 7 2 0 0 0 0.69377 1 15890 15890 1.7423 0.54893 1 978260 57773 4933 38524 39400 67439 67439 -0.05009982773253796 SENTFCSGDH 10 Unmodified _SENTFCSGDH_ 0 0 0 nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU;ENSG00000107882|ENST00000369902|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU nc|ENSG00000107882|Q9UMX1-2|SUFU MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7511596679688 2 548.703645 1095.39274 -0.36375 -0.00019959 2.4105 0.0013226 2.0467 0.001123 548.7047400468143 34.469 0.21427 34.469 34.365 34.579 0 22 10 3 0 0 0 0.23325 1 18118 18118 10.074 2.1638 1 3002700 57774 2527 38525 39401 67440 67440 -0.15114312366631566 SEPFLAPL 8 Unmodified _SEPFLAPL_ 0 0 0 nc|ENSG00000105429|Q7Z7M0-2|MEGF8;ENSG00000105429|ENST00000251268|MEGF8 nc|ENSG00000105429|Q7Z7M0-2|MEGF8 nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.2392272949219 2 437.239461 872.46437 NaN NaN NaN NaN NaN NaN NaN 80.116 1 79.627 79.127 80.127 -0.48932 0 0 0 0.97444 1 43880 43880 2.5775 0 1 57775 2321 38526 39402 67441 67441 0.02303595120179125 SEPVPGERIF 10 Unmodified _SEPVPGERIF_ 0 0 0 ENST00000265748.6_2_7:36429459-36435956:+|nuORF ENST00000265748.6_2_7:36429459-36435956:+|nuORF ENST00000265748.6_2_7:36429459-36435956:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7947387695312 2 565.795663 1129.57677 NaN NaN NaN NaN NaN NaN NaN 59.223 1 58.732 58.232 59.232 -0.49079 0 0 0 0.8671 1 32217 32217 9.3831 0.78985 1 57776 11336 38527 39403 67442 67442 0.01716824126378924 SEQDRPEEL 9 Unmodified _SEQDRPEEL_ 0 0 0 REV__ENSG00000249156|ENST00000503184|TAF11L12 REV__ENSG00000249156|ENST00000503184|TAF11L12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7542114257812 2 551.754192 1101.49383 0.84563 0.00046658 -1.0172 -0.00056123 -0.17155 -9.4653E-05 551.7531771961918 58.301 0.38964 52.227 52.031 52.421 -6.0745 47 20 3 0 0 0 0.19361 1 37271 37271 13.906 0 1 23421000 + 57777 24492 38528 39404 67443 67443 -0.05285537392273909 SERDQDWQF 9 Unmodified _SERDQDWQF_ 0 0 0 REV__ENSG00000172071|ENST00000303236|EIF2AK3 REV__ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.759765625 2 605.759809 1209.50507 -0.012472 -7.5551E-06 -0.23009 -0.00013938 -0.24256 -0.00014693 605.7598755485758 68.786 0.58323 68.786 68.463 69.046 0 79 25 4 0 0 0 0.30562 2 38321 38228;38321 16.942 4.9171 1 4405900 + 57778 22625 38529 39405 67444;67445 67445 -0.09130715298169889 SEREKEPDF 9 Unmodified _SEREKEPDF_ 0 0 0 REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF REV__ENST00000565070.5_1_16:27236480-27237242:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8574829101562 3 379.512132 1135.51457 -0.79344 -0.00030112 -2.2394 -0.00084986 -3.0328 -0.001151 379.51140497162993 28.304 0.21933 28.304 28.149 28.368 0 17 10 2 0 0 0 0.20528 1 14558 14558 2.7352 0 1 1092800 + 57779 22384 38530 39406 67446 67446 -0.047769470126240776 SERHPSIRI 9 Unmodified _SERHPSIRI_ 0 0 0 REV__ENSG00000165490|ENST00000533655|DDIAS REV__ENSG00000165490|ENST00000533655|DDIAS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.21240234375 3 365.540357 1093.59924 0.001789 6.5397E-07 -2.0016 -0.00073165 -1.9998 -0.000731 365.87392936331804 38.357 0.32764 38.07 37.827 38.154 -0.28687 21 14 2 0 0 0 0.21473 1 20088 20088 0.96228 0 1 703010 + 57780 22013 38531 39407 67447 67447 0.056184683146511816 SERQVKTWF 9 Unmodified _SERQVKTWF_ 0 0 0 ENSG00000152804|ENST00000282728|HHEX ENSG00000152804|ENST00000282728|HHEX ENSG00000152804|ENST00000282728|HHEX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2085876464844 3 394.208495 1179.60366 -0.047764 -1.8829E-05 0.23565 9.2897E-05 0.18789 7.4068E-05 394.2085895314669 18.354 0.36222 18.36 18.244 18.606 0.0060463 66 21 5 0 0 0 0.32871 1 9263 9263 10.8 0 1 47455000 57781 6215 38532 39408 67448 67448 0.021039327375547145 SERSCIYEE 9 Unmodified _SERSCIYEE_ 0 0 0 ENSG00000178338|ENST00000322434|ZNF354B ENSG00000178338|ENST00000322434|ZNF354B ENSG00000178338|ENST00000322434|ZNF354B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2017517089844 3 372.493973 1114.46009 -0.046499 -1.732E-05 -0.16478 -6.138E-05 -0.21128 -7.8701E-05 372.4939270622959 35.792 0.24061 35.792 35.674 35.914 0 24 11 3 0 0 0 0.21885 1 18891 18891 0.96228 0 1 3737800 57782 8746 38533 39409 67449 67449 -0.09256282155683948 SERSVVVPF 9 Unmodified _SERSVVVPF_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5 REV__nc|ENSG00000171365|P51795-1|CLCN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2797546386719 2 510.279649 1018.54475 0.87394 0.00044595 0.46812 0.00023887 1.3421 0.00068483 510.27953135204683 46.079 0.20715 46.079 45.957 46.164 0 12 9 2 0 0 0 0.25681 1 25185 25185 19.257 5.3509 1 1966400 + 57783 22555 38534 39410 67450 67450 0.036214564432498264 SERSVVVPF 9 Unmodified _SERSVVVPF_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5 REV__nc|ENSG00000171365|P51795-1|CLCN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2046508789062 2 510.279649 1018.54475 0.87394 0.00044595 0.46812 0.00023887 1.3421 0.00068483 510.27953135204683 46.079 0.20715 46.079 45.957 46.164 0 12 9 2 0 0 0 0.18482 1 25115 25115 18.146 3.5647 1 1966400 + 57784 22555 38534 39410 67451 67451 0.036214564432498264 SERVAKLVF 9 Unmodified _SERVAKLVF_ 0 0 0 ENSG00000061656|ENST00000374273|SPAG4 ENSG00000061656|ENST00000374273|SPAG4 ENSG00000061656|ENST00000374273|SPAG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.0421752929688 2 524.811116 1047.60768 -0.60011 -0.00031495 -0.33211 -0.00017429 -0.93222 -0.00048924 524.8108953234122 32.78 0.30895 32.78 32.618 32.927 0 45 15 4 0 0 0 0.54816 1 17080 17080 7.2892 4.554 1 25210000 57785 839 38535 39411 67452 67452 0.08578022231290561 SESAETEKKF 10 Unmodified _SESAETEKKF_ 0 0 0 REV__ENSG00000139618|ENST00000380152|BRCA2 REV__ENSG00000139618|ENST00000380152|BRCA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.9820556640625 2 578.280043 1154.54553 1.3725 0.0007937 2.5893 0.0014973 3.9618 0.002291 578.2820603332962 35.954 0.38676 31.761 31.512 31.899 -4.1928 33 24 2 0 0 0 0.21783 1 20867 20867 13.042 2.2185 1 8866100 + 57786 20418 38536 39412 67453 67453 -0.0255579369836596 SESLPIVS 8 Unmodified _SESLPIVS_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8851623535156 2 416.226551 830.438549 NaN NaN NaN NaN NaN NaN NaN 26.415 1 26.415 25.915 26.915 0 0 0 0 0.97444 1 13578 13578 0.69038 0 1 + 57787 17207 38537 39413 67454 67454 0.016547008779298267 SESPPLNSFY 10 Unmodified _SESPPLNSFY_ 0 0 0 REV__nc|ENSG00000089876|Q7L7V1-2|DHX32 REV__nc|ENSG00000089876|Q7L7V1-2|DHX32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7645263671875 2 570.764029 1139.5135 0.49763 0.00028403 0.82328 0.0004699 1.3209 0.00075393 570.7643283854386 55.253 0.25323 54.775 54.588 54.841 -0.47798 16 11 2 0 0 0 0.38092 1 29984 29984 22.736 0 1 1502100 + 57788 17848 38538 39414 67455 67455 -0.050671613814984084 SESQYLKIL 9 Unmodified _SESQYLKIL_ 0 0 0 ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1 ENSG00000085382|ENST00000262903|HACE1 ENSG00000085382|ENST00000262903|HACE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8697814941406 3 360.869368 1079.58628 1.0272 0.0003707 -0.47845 -0.00017266 0.54878 0.00019804 360.869362943589 38.564 0.29382 34.195 33.996 34.29 -4.3689 30 18 2 0 0 0 0.23158 1 22740 22740 14.405 3.6059 1 12668000 57789 1408 38539 39415 67456 67456 0.04966592411892634 SESRHQQEA 9 Unmodified _SESRHQQEA_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2534790039062 2 536.244326 1070.4741 0.29414 0.00015773 -0.10742 -5.7604E-05 0.18672 0.00010013 536.244940970954 74.31 0.38242 74.354 74.137 74.52 0.043976 32 16 3 0 0 0 0.18882 1 40841 40841 6.7232 0 1 1382900 57790 3920 38540 39416 67457 67457 -0.058318686123584484 SESSDDDYD 9 Unmodified _SESSDDDYD_ 0 0 0 ENST00000585583.5_1_19:39088111-39100659:-|nuORF;ENSG00000104814|ENST00000396857|MAP4K1;nc|ENSG00000104814|Q92918|MAP4K1 ENST00000585583.5_1_19:39088111-39100659:-|nuORF ENST00000585583.5_1_19:39088111-39100659:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.6675415039062 2 516.667448 1031.32034 NaN NaN NaN NaN NaN NaN NaN 13.13 1 13.082 12.582 13.582 -0.048298 0 0 0 0.8622 1 6372 6372 0 0 1 57791 2238 38541 39417 67458 67458 -0.19406367959209092 SESSDTHE 8 Unmodified _SESSDTHE_ 0 0 0 REV__nc|ENSG00000136504|O95251-4|KAT7 REV__nc|ENSG00000136504|O95251-4|KAT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.1687927246094 2 446.169961 890.325369 0.39792 0.00017754 -0.69754 -0.00031122 -0.29962 -0.00013368 446.16950968328376 38.265 1.2439 38.282 37.46 38.703 0.01704 166 59 4 0 0 0 0.80992 1 19951 19951 0.69038 0 1 83812000 + 57792 20166 38542 39418 67459 67459 -0.12418019305937378 SESSDVLPK 9 Unmodified _SESSDVLPK_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2451171875 2 481.245472 960.476391 -0.17256 -8.3044E-05 -0.88134 -0.00042414 -1.0539 -0.00050718 481.2449592638267 24.198 0.49032 24.198 23.936 24.426 0 67 28 4 0 0 0 0.18144 2 12370 12265;12370 24.991 14.917 1 7194100 + 57793 165 38543 39419 67460;67461 67461 -0.005428329272831434 SESSDVLPK 9 Unmodified _SESSDVLPK_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2461242675781 2 481.245472 960.476391 0.53598 0.00025794 0.15347 7.3856E-05 0.68945 0.00033179 481.24540051138894 27.658 0.28461 24.622 24.395 24.68 -3.0365 17 13 2 0 0 0 0.044296 1 15335 15335 47.594 3.7361 1 7825300 + 57794 165 38543 39419 67462 67462 -0.005428329272831434 SESWWFERRWN 11 Unmodified _SESWWFERRWN_ 0 0 0 REV__ENST00000529028.1_1_11:12297633-12308767:+|nuORF REV__ENST00000529028.1_1_11:12297633-12308767:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 791.8632202148438 2 791.862931 1581.71131 0.78377 0.00062064 -0.7721 -0.0006114 0.011673 9.2434E-06 791.8620787989431 70.309 0.33533 70.345 70.213 70.549 0.035507 36 15 3 0 0 0 0.73992 1 38754 38754 0 0 1 16137000 + 57795 28417 38544 39420 67463 67463 -0.05627722399026425 SETAFIRKLH 10 Unmodified _SETAFIRKLH_ 0 0 0 ENST00000478192.1_1_10:70055990-70056739:-|nuORF;ENST00000277795.8_1_10:70048686-70066625:-|nuORF;nc|ENSG00000108187|P30039-2|PBLD;ENSG00000108187|ENST00000358769|PBLD ENST00000478192.1_1_10:70055990-70056739:-|nuORF ENST00000478192.1_1_10:70055990-70056739:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.2275695800781 3 401.227779 1200.66151 NaN NaN NaN NaN NaN NaN NaN 18.403 1 15.782 15.282 16.282 -2.6215 0 0 0 0.92825 1 9690 9690 3.5871 1.5011 1 57796 2551 38545 39421 67464 67464 0.06920194663007351 SETELLKIL 9 Unmodified _SETELLKIL_ 0 0 0 REV__nc|ENSG00000278540|Q13085-3|ACACA REV__nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.3107299804688 2 523.310615 1044.60668 -0.2906 -0.00015207 -0.18422 -9.6405E-05 -0.47482 -0.00024848 523.3103912536716 55.694 0.25826 55.694 55.552 55.81 0 45 25 2 0 0 0 0.018301 1 30919 30919 65.235 0 1 10824000 + 57797 24673 38546 39422 67465 67465 0.08615763071702531 SETELLKIL 9 Unmodified _SETELLKIL_ 0 0 0 REV__nc|ENSG00000278540|Q13085-3|ACACA REV__nc|ENSG00000278540|Q13085-3|ACACA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 523.310615 1044.60668 -0.2906 -0.00015207 -0.18422 -9.6405E-05 -0.47482 -0.00024848 523.3103912536716 55.694 0.25826 55.694 55.552 55.81 0 -0.029649 9.4508E-06 NaN 65.235 45 25 2 NaN NaN NaN NaN 0 NaN NaN 0 10824000 + 57798 24673 38546 39422 0.08615763071702531 SETELLKIL 9 Unmodified _SETELLKIL_ 0 0 0 REV__nc|ENSG00000278540|Q13085-3|ACACA REV__nc|ENSG00000278540|Q13085-3|ACACA MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 523.310615 1044.60668 0.67507 0.00035327 0.27645 0.00014467 0.95152 0.00049794 523.3104972307667 61.998 0.34797 55.823 55.557 55.905 -6.1757 0.098804 0.0004916 NaN 65.235 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 29005000 + 57799 24673 38546 39422 0.08615763071702531 SETGGYREE 9 Unmodified _SETGGYREE_ 0 0 0 ENST00000355196.6_1_4:83821322-83821651:-|nuORF;ENST00000504869.1_1_4:83821360-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF ENST00000355196.6_1_4:83821322-83821651:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2195434570312 2 514.219985 1026.42542 0.26216 0.00013481 -0.43294 -0.00022263 -0.17078 -8.7818E-05 514.2197834785364 17.374 0.49523 17.379 17.036 17.532 0.0050564 100 38 3 0 0 0 0.095405 1 8794 8794 34.102 3.4659 1 5559800 57800 12071 38547 39423 67466 67466 -0.08673781972129291 SETHRVAYF 9 Unmodified _SETHRVAYF_ 0 0 0 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.8054809570312 2 555.272355 1108.53016 0.90783 0.00050409 -3.7772 -0.0020974 -2.8693 -0.0015933 555.2700457415223 58.295 0.30264 52.221 52.05 52.353 -6.0745 22 15 2 0 0 0 0.16229 1 37258 37258 18.135 0 1 11490000 + 57801 29871 38548 39424 67467 67467 -0.019766157049161848 SETIRMPNSKQ 11 Unmodified _SETIRMPNSKQ_ 0 0 0 REV__ENSG00000176542|ENST00000316407|USF3 REV__ENSG00000176542|ENST00000316407|USF3 MSMS AL20221201_MKP_PDAC_01 4 430.8890380859375 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 25.913 1 22.961 22.461 23.461 -2.9511 0 0 0 0.94032 1 14222 14222 0.92553 0 1 + 57802 22936 38549 39425 67468 67468 0.006550218520942508 SETKFEMCY 9 Unmodified _SETKFEMCY_ 0 0 0 REV__ENSG00000164764|ENST00000297354|SBSPON REV__ENSG00000164764|ENST00000297354|SBSPON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8250732421875 3 379.824554 1136.45183 0.20986 7.9712E-05 0.72569 0.00027564 0.93556 0.00035535 379.82492758916555 67.869 0.46053 67.869 67.639 68.099 0 46 22 3 0 0 0 0.58865 1 37896 37896 1.0715 0 1 1503500 + 57803 21949 38550 39426 67469 67469 -0.11093552396664563 SETLRVYIF 9 Unmodified _SETLRVYIF_ 0 0 0 ENST00000392870.2_1_10:121214892-121215066:+|nuORF ENST00000392870.2_1_10:121214892-121215066:+|nuORF ENST00000392870.2_1_10:121214892-121215066:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2694702148438 2 564.308406 1126.60226 0.99816 0.00056327 -0.44273 -0.00024983 0.55544 0.00031344 564.3083718058099 68.586 0.5565 62.41 62.098 62.654 -6.1757 58 32 2 0 0 0 0.15672 1 44705 44705 26.884 0 1 37973000 57804 12685 38551 39427 67470 67470 0.04402298648778924 SETNKEDE 8 Unmodified _SETNKEDE_ 0 0 0 ENSG00000118412|ENST00000551025|CASP8AP2;ENST00000237177.10_1_6:90556308-90583533:+|nuORF;nc|ENSG00000118412|Q9UKL3|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 ENSG00000118412|ENST00000551025|CASP8AP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.5881042480469 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 15.785 1 15.785 15.285 16.285 0 0 0 0 0.97444 1 7636 7636 2.5775 0 1 57805 3369 38552 39428 67471 67471 -0.09429177100378183 SEVAKFHDDYL 11 Unmodified _SEVAKFHDDYL_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.3150024414062 2 662.314417 1322.61428 0.26032 0.00017242 -0.67855 -0.00044942 -0.41823 -0.000277 662.3139714346524 53.603 0.26606 53.603 53.439 53.705 0 17 12 2 0 0 0 0.42108 1 29714 29714 20.415 1.0526 1 2452200 + 57806 17906 38553 39429 67472 67472 -0.03412129398657271 SEVAKFHDDYL 11 Unmodified _SEVAKFHDDYL_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.313720703125 2 662.314417 1322.61428 0.20185 0.00013369 0.051315 3.3986E-05 0.25317 0.00016768 662.3144451640853 54.258 0.3153 53.791 53.606 53.921 -0.46664 45 15 4 0 0 0 0.39949 1 29339 29339 21.537 1.1224 1 19425000 + 57807 17906 38553 39429 67473 67473 -0.03412129398657271 SEVAKFHDDYL 11 Unmodified _SEVAKFHDDYL_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 662.314417 1322.61428 0.26032 0.00017242 -0.67855 -0.00044942 -0.41823 -0.000277 662.3139714346524 53.603 0.26606 53.603 53.439 53.705 0 -0.14091 -0.00090984 NaN 21.537 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2452200 + 57808 17906 38553 39429 -0.03412129398657271 SEVAKFHDDYL 11 Unmodified _SEVAKFHDDYL_ 0 0 0 REV__ENSG00000092148|ENST00000399332|HECTD1 REV__ENSG00000092148|ENST00000399332|HECTD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 662.314417 1322.61428 0.20185 0.00013369 0.051315 3.3986E-05 0.25317 0.00016768 662.3144451640853 54.258 0.3153 53.791 53.606 53.921 -0.46664 0.04678 5.6964E-05 NaN 21.537 45 15 4 NaN NaN NaN NaN 0 NaN NaN 0 19425000 + 57809 17906 38553 39429 -0.03412129398657271 SEVALLSSAS 10 Unmodified _SEVALLSSAS_ 0 0 0 REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1 REV__nc|ENSG00000248383|Q9H158-2|PCDHAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7532043457031 2 482.253297 962.492041 0.37684 0.00018173 -2.8122 -0.0013562 -2.4353 -0.0011744 482.25035471615377 42.24 0.38964 42.24 42.011 42.401 0 51 19 5 0 0 0 0.52888 1 22869 22869 14.838 0 1 10217000 + 57810 24488 38554 39430 67474 67474 0.009294535897765854 SEVATGPFQD 10 Unmodified _SEVATGPFQD_ 0 0 0 REV__ENST00000508680.5_1_1:16767256-16774594:+|nuORF REV__ENST00000508680.5_1_1:16767256-16774594:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7406005859375 2 525.740554 1049.46655 -0.1399 -7.355E-05 0.79745 0.00041925 0.65755 0.0003457 525.7407612502145 41.288 0.36237 41.288 41.1 41.462 0 54 17 5 0 0 0 0.46514 1 22310 22310 18.146 0 1 24666000 + 57811 21369 38555 39431 67475 67475 -0.05620020932656189 SEVDDFVHNL 10 Unmodified _SEVDDFVHNL_ 0 0 0 REV__ENST00000592284.5_1_19:55593146-55593922:+|nuORF REV__ENST00000592284.5_1_19:55593146-55593922:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2931518554688 2 587.772385 1173.53022 -0.63366 -0.00037245 -0.55817 -0.00032808 -1.1918 -0.00070053 587.7712678300821 34.184 0.18602 34.184 34.103 34.289 0 16 9 2 0 0 0 0.52888 1 17947 17947 14.838 0.43289 1 4355700 + 57812 19764 38556 39432 67476 67476 -0.049606604955670264 SEVDRQQWI 9 Unmodified _SEVDRQQWI_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1160.970336914062 1 1160.56946 1159.56219 0.17775 0.00020629 0.69791 0.00080997 0.87566 0.0010163 1160.5716472908368 101.23 0.094345 101.09 101.03 101.13 -0.13293 5 3 2 0 0 0 0.61381 1 55238 55238 0.52476 0 1 769600 57813 9290 38557 39433 67477 67477 -0.011212480217636767 SEVKEVEENI 10 Unmodified _SEVKEVEENI_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.291748046875 2 588.29315 1174.57175 -0.60306 -0.00035478 0.24022 0.00014132 -0.36283 -0.00021345 588.2933839579474 33.984 0.28122 33.984 33.822 34.103 0 39 13 4 0 0 0 0.0015532 1 17837 17837 110.79 44.336 1 29900000 + 57814 176 38558 39434 67478 67478 -0.008555245268780709 SEVKEVEENI 10 Unmodified _SEVKEVEENI_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.29248046875 2 588.29315 1174.57175 0.72239 0.00042498 0.046087 2.7113E-05 0.76847 0.00045209 588.2936471641218 39.062 0.32179 34.611 34.428 34.75 -4.4509 44 20 3 0 0 0 0.0042881 2 23176 23043;23176 100.71 43.74 1 21491000 + 57815 176 38558 39434 67479;67480 67480 -0.008555245268780709 SEVRNTEM 8 Unmodified _SEVRNTEM_ 0 0 0 REV__ENSG00000100941|ENST00000216832|PNN REV__ENSG00000100941|ENST00000216832|PNN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4949951171875 1 965.435671 964.428395 0.52704 0.00050882 -0.54948 -0.00053048 -0.022439 -2.1663E-05 965.4355076186678 57.34 0.22773 57.34 57.239 57.467 0 12 9 2 0 0 0 8.7369 1 31907 31907 16.942 5.302 1 548470 + 57816 18119 38559 39435 67481 67481 -0.05524230118965079 SEVWFRFNE 9 Unmodified _SEVWFRFNE_ 0 0 0 ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-2|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18;ENST00000498439.1_1_16:846687-847972:+|nuORF ENSG00000127586|ENST00000262315|CHTF18 ENSG00000127586|ENST00000262315|CHTF18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.833251953125 2 607.285463 1212.55637 0.33994 0.00020644 2.3061 0.0014004 2.646 0.0016069 607.2863704304164 47.516 0.17342 47.516 47.427 47.601 0 17 7 3 0 0 0 0.20727 1 25978 25978 4.3292 0 1 1661800 57817 4021 38560 39436 67482 67482 -0.04140346533426964 SEWAEAEEPSW 11 Unmodified _SEWAEAEEPSW_ 0 0 0 REV__nc|ENSG00000085644|O14771-2|ZNF213 REV__nc|ENSG00000085644|O14771-2|ZNF213 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3309936523438 2 660.772582 1319.53061 0.6046 0.00039951 1.0049 0.00066401 1.6095 0.0010635 660.7735712574963 74.519 0.34072 74.565 74.411 74.751 0.045959 45 14 4 0 0 0 0.30139 1 41061 41061 5.7319 1.4026 1 8158600 + 57818 17755 38561 39437 67483 67483 -0.11637285566371247 SEWAWLRENY 10 Unmodified _SEWAWLRENY_ 0 0 0 REV__ENSG00000130234|ENST00000252519|ACE2 REV__ENSG00000130234|ENST00000252519|ACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.8794860839844 3 451.878926 1352.61495 -0.4676 -0.0002113 2.2864 0.0010332 1.8188 0.00082186 451.88001879454765 35.373 0.19997 35.151 35.045 35.245 -0.2224 20 8 3 0 0 0 0.69917 1 18533 18533 1.4551 0.44154 1 2216100 + 57819 19708 38562 39438 67484 67484 -0.047252899589466324 SEWDWMEFASY 11 Unmodified _SEWDWMEFASY_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2109375 3 484.192182 1449.55472 0.73329 0.00035505 2.3613 0.0011433 3.0946 0.0014984 484.19265591248063 51.431 0.33138 51.431 51.229 51.561 0 18 14 2 0 0 0 0.30584 1 28300 28300 1.3296 1.1703 1 965950 57820 4555 38563 39439 67485 67485 -0.1520776840434337 SEWMSLSPAWT 11 Unmodified _SEWMSLSPAWT_ 0 0 0 REV__ENST00000382254.5_1_5:21975478-22078673:-|nuORF REV__ENST00000382254.5_1_5:21975478-22078673:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 647.7933959960938 2 647.792263 1293.56997 0.44898 0.00029084 0.82869 0.00053682 1.2777 0.00082766 648.2943454676874 42.348 0.19415 42.339 42.227 42.421 -0.0088196 13 8 2 0 0 0 0.56638 1 22696 22696 13.042 3.6593 1 5802500 + 57821 26344 38564 39440 67486 67486 -0.06506856816531581 SEWMSLSPAWT 11 Unmodified _SEWMSLSPAWT_ 0 0 0 REV__ENST00000382254.5_1_5:21975478-22078673:-|nuORF REV__ENST00000382254.5_1_5:21975478-22078673:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 647.792263 1293.56997 0.44898 0.00029084 0.82869 0.00053682 1.2777 0.00082766 648.2943454676874 42.348 0.19415 42.339 42.227 42.421 -0.0088196 0 0 NaN 13.042 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5802500 + 57822 26344 38564 39440 -0.06506856816531581 SEYFYQEEF 9 Unmodified _SEYFYQEEF_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2536010742188 2 621.253494 1240.49243 0.96183 0.00059754 -0.50876 -0.00031607 0.45307 0.00028147 621.2529572752073 54.446 0.80852 54.446 54.111 54.92 0 83 35 3 0 0 0 0.54444 1 30067 30067 4.756 0 1 4115100 57823 6396 38565 39441 67487 67487 -0.11819171481033663 SEYISSDGSY 10 Unmodified _SEYISSDGSY_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-2|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.82177734375 3 369.820743 1106.4404 0.16662 6.1621E-05 1.822 0.00067383 1.9887 0.00073545 369.82148608441884 48.051 0.27743 48.051 47.916 48.193 0 29 13 3 0 0 0 0.69126 1 26331 26331 3.8763 1.1411 1 3190100 57824 7218 38566 39442 67488 67488 -0.10856334894788233 SEYPDLFEWF 10 Unmodified _SEYPDLFEWF_ 0 0 0 nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-3|CRELD2;nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;ENSG00000184164|ENST00000328268|CRELD2;nc|ENSG00000184164|Q6UXH1-5|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.7929077148438 2 666.792786 1331.57102 -0.02388 -1.5923E-05 0.36776 0.00024522 0.34388 0.0002293 666.7929962724717 88.408 0.45673 88.408 88.073 88.53 0 39 22 3 0 0 0 0.71123 1 48997 48997 1.6526 0.32309 1 811910 57825 14133 38567 39443 67489 67489 -0.08150319175979348 SEYQLFKTIL 10 Unmodified _SEYQLFKTIL_ 0 0 0 REV__ENSG00000059758|ENST00000261211|CDK17 REV__ENSG00000059758|ENST00000261211|CDK17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3409423828125 2 621.342446 1240.67034 NaN NaN NaN NaN NaN NaN NaN 85.02 1 85.02 84.52 85.52 0 0 0 0 0.92825 1 47123 47123 6.7232 3.1267 1 + 57826 17320 38568 39444 67490 67490 0.05963123508809076 SEYQWITASGF 11 Unmodified _SEYQWITASGF_ 0 0 0 REV__ENST00000482027.1_1_3:119747713-119748052:+|nuORF REV__ENST00000482027.1_1_3:119747713-119748052:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.300048828125 2 644.79586 1287.57717 0.23523 0.00015167 -0.05806 -3.7437E-05 0.17717 0.00011424 645.298470943946 94.362 0.10428 93.941 93.89 93.994 -0.42044 6 4 2 0 0 0 0.7453 1 51576 51576 0 0 1 193250 + 57827 27713 38569 39445 67491 67491 -0.05511800944464085 SEYTVNLTL 9 Unmodified _SEYTVNLTL_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2683715820312 2 520.268947 1038.52334 0.96111 0.00050004 -2.304 -0.0011987 -1.3429 -0.00069867 520.2676437834865 75.221 0.43536 69.045 68.759 69.194 -6.1757 38 23 2 0 0 0 0.070838 1 49109 49109 39.957 1.9833 1 11237000 + 57828 21641 38570 39446 67492 67492 0.005620266238565819 SEYYNEKLF 9 Unmodified _SEYYNEKLF_ 0 0 0 REV__ENST00000529983.2_1_12:89917068-89917107:-|nuORF REV__ENST00000529983.2_1_12:89917068-89917107:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2811279296875 2 596.779679 1191.5448 0.41772 0.00024929 1.3562 0.00080936 1.7739 0.0010586 597.2814341504646 100.5 0.17645 94.327 94.254 94.431 -6.1757 16 10 2 0 0 0 0.2001 1 67216 67216 23.148 5.0134 1 69192000 + 57829 28429 38571 39447 67493 67493 -0.04330588347443154 SFAASGLLEF 10 Unmodified _SFAASGLLEF_ 0 0 0 REV__ENST00000536157.5_1_12:4705770-4705914:+|nuORF REV__ENST00000536157.5_1_12:4705770-4705914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2686767578125 2 521.266207 1040.51786 0.14119 7.3599E-05 2.367 0.0012338 2.5082 0.0013074 521.2680223785682 71.69 0.3083 71.69 71.488 71.796 0 28 13 3 0 0 0 0.66569 1 39892 39892 6.7232 0.36906 1 1276100 + 57830 28536 38572 39448 67494 67494 -0.0007765216794268781 SFAASGLLEF 10 Unmodified _SFAASGLLEF_ 0 0 0 REV__ENST00000536157.5_1_12:4705770-4705914:+|nuORF REV__ENST00000536157.5_1_12:4705770-4705914:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 521.266207 1040.51786 0.14119 7.3599E-05 2.367 0.0012338 2.5082 0.0013074 521.2680223785682 71.69 0.3083 71.69 71.488 71.796 0 0 0 NaN 6.7232 28 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1276100 + 57831 28536 38572 39448 -0.0007765216794268781 SFAELGSLAL 10 Unmodified _SFAELGSLAL_ 0 0 0 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 REV__nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2764892578125 2 504.274032 1006.53351 0.79567 0.00040124 1.7567 0.00088587 2.5524 0.0012871 504.2746453807288 49.825 0.31574 44.286 44.167 44.483 -5.5391 27 19 2 0 0 0 0.024115 1 31204 31204 71.922 5.4656 1 14793000 + 57832 19731 38573 39449 67495 67495 0.030506343490856125 SFAKGCKSCDF 11 Unmodified _SFAKGCKSCDF_ 0 0 0 REV__nc|ENSG00000196437|Q5MCW4-2|ZNF569 REV__nc|ENSG00000196437|Q5MCW4-2|ZNF569 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7117309570312 2 596.759909 1191.50526 2.1793 0.0013005 0.78498 0.00046844 2.9643 0.0017689 596.7602448906807 96.467 0.33563 96.46 96.31 96.645 -0.007019 18 11 2 0 0 0 0.29564 1 53579 53579 9.3831 0 1 1464700 + 57833 23828 38574 39450 67496 67496 -0.08282754894162281 SFAKLRKMTEI 11 Unmodified _SFAKLRKMTEI_ 0 0 0 LRRIQ4|p.E255K|1|0.18|ENSG00000188306|chr3:169822684-169822684|G/A|missense_variant LRRIQ4|p.E255K|1|0.18|ENSG00000188306|chr3:169822684-169822684|G/A|missense_variant LRRIQ4|p.E255K|1|0.18|ENSG00000188306|chr3:169822684-169822684|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.3760375976562 2 662.376297 1322.73804 NaN NaN NaN NaN NaN NaN NaN 97.868 1 97.625 97.125 98.125 -0.24277 0 0 0 0.9435 1 53450 53450 0 0 1 57834 15980 38575 39451 67497 67497 0.08958250167984261 SFAKRDLII 9 Unmodified _SFAKRDLII_ 0 0 0 MYO7A|p.G1630R|1|0.2|ENSG00000137474|chr11:77201483-77201483|G/A|missense_variant MYO7A|p.G1630R|1|0.2|ENSG00000137474|chr11:77201483-77201483|G/A|missense_variant MYO7A|p.G1630R|1|0.2|ENSG00000137474|chr11:77201483-77201483|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8165893554688 2 531.818941 1061.62333 0.22068 0.00011736 -2.6676 -0.0014187 -2.4469 -0.0013013 531.8173393009853 75.676 0.65598 75.724 75.29 75.946 0.047943 39 30 2 0 0 0 0.54444 1 41684 41684 4.756 0 1 1345900 57835 16003 38576 39452 67498 67498 0.09498308748334239 SFALFFLGL 9 Unmodified _SFALFFLGL_ 0 0 0 ENST00000543940.1_1_12:124114818-124118191:-|nuORF ENST00000543940.1_1_12:124114818-124118191:-|nuORF ENST00000543940.1_1_12:124114818-124118191:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.7869567871094 2 507.786579 1013.5586 NaN NaN NaN NaN NaN NaN NaN 46.821 1 41.74 41.24 42.24 -5.0805 0 0 0 0.15618 1 28988 28988 36.044 3.2585 1 57836 15076 38577 39453 67499 67499 0.05236733942331284 SFALLVNRL 9 Unmodified _SFALLVNRL_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8142700195312 2 516.813659 1031.61277 0.84523 0.00043683 0.55975 0.00028929 1.405 0.00072612 516.8139392847859 64.568 0.4499 64.557 64.358 64.808 -0.010529 67 22 4 0 0 0 0.019303 2 35307 35307;35420 64.236 20.378 1 54822000 + 57837 22192 38578 39454 67500;67501 67500 0.09822326093899392 SFALLVNRL 9 Unmodified _SFALLVNRL_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.813659 1031.61277 0.27735 0.00014334 -3.5093 -0.0018137 -3.232 -0.0016703 516.813844523855 65.047 0.15199 64.563 64.511 64.663 -0.48428 0.0028075 -0.00416 NaN 64.236 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 407730 + 57838 22192 38578 39454 0.09822326093899392 SFALLVNRL 9 Unmodified _SFALLVNRL_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.813659 1031.61277 0.84523 0.00043683 0.55975 0.00028929 1.405 0.00072612 516.8139392847859 64.568 0.4499 64.557 64.358 64.808 -0.010529 -0.0028075 4.5886E-05 NaN 64.236 67 22 4 NaN NaN NaN NaN 0 NaN NaN 0 54822000 + 57839 22192 38578 39454 0.09822326093899392 SFAMSAILDVN 11 Unmodified _SFAMSAILDVN_ 0 0 0 ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E ENSG00000186038|ENST00000415389|HTR3E;nc|ENSG00000186038|A5X5Y0-3|HTR3E nc|ENSG00000186038|A5X5Y0-3|HTR3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.2955932617188 2 584.289356 1166.56416 0.79223 0.00046289 -0.40251 -0.00023518 0.38972 0.00022771 584.2890185947283 69.38 0.49962 69.411 69.111 69.611 0.030914 91 27 5 0 0 0 0.65108 1 38055 38055 8.7454 2.5396 1 727960000 57840 9444;16460 38579 39455 67502 67502 -0.012459553281814806 SFAPCGGF 8 Unmodified _SFAPCGGF_ 0 0 0 ENST00000380050.7_1_7:90747491-90836600:+|nuORF ENST00000380050.7_1_7:90747491-90836600:+|nuORF ENST00000380050.7_1_7:90747491-90836600:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.1697387695312 2 393.167982 784.32141 NaN NaN NaN NaN NaN NaN NaN 26.185 1 26.185 25.685 26.685 0 0 0 0 0.9706 1 13453 13453 6.3541 3.4649 1 57841 12585 38580 39456 67503 67503 -0.07937735542680002 SFAPTSYTF 9 Unmodified _SFAPTSYTF_ 0 0 0 REV__nc|ENSG00000102755|P17948-7|FLT1 REV__nc|ENSG00000102755|P17948-7|FLT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2572021484375 2 510.737283 1019.46001 0.57106 0.00029166 0.3923 0.00020036 0.96336 0.00049202 510.7373683847857 59.704 0.34766 59.704 59.555 59.902 0 48 15 4 0 0 0 0.18521 1 33342 33342 16.942 1.0951 1 28075000 + 57842 18251 38581 39457 67504 67504 -0.048939140933725866 SFASLIFFRL 10 Unmodified _SFASLIFFRL_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.8960876464844 3 400.89737 1199.67028 NaN NaN NaN NaN NaN NaN NaN 47.378 1 42.205 41.705 42.705 -5.1734 0 0 0 0.8634 1 29399 29399 9.544 1.0997 1 + 57843 25691 38582 39458 67505 67505 0.07843168299473291 SFASQQQKL 9 Unmodified _SFASQQQKL_ 0 0 0 ENST00000584430.1_1_18:856910-856979:+|nuORF ENST00000584430.1_1_18:856910-856979:+|nuORF ENST00000584430.1_1_18:856910-856979:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.77490234375 2 518.774731 1035.53491 0.76844 0.00039865 -0.0146 -7.5743E-06 0.75384 0.00039107 518.7747171167555 28.513 0.45488 25.365 25.119 25.573 -3.1482 91 23 5 0 0 0 0.34999 1 16044 16044 14.838 0.43289 1 355980000 57844 15595 38583 39459 67506 67506 0.018562684378593985 SFATKGLLI 9 Unmodified _SFATKGLLI_ 0 0 0 REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF REV__ENST00000486429.1_1_3:170136842-170141147:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2898559570312 2 475.289485 948.564418 0.4885 0.00023218 -0.38406 -0.00018254 0.10444 4.9641E-05 475.2893327764956 61.902 0.3275 61.414 61.222 61.55 -0.48764 38 15 3 0 0 0 0.34999 1 33768 33768 14.838 0 1 5625600 + 57845 27804 38584 39460 67507 67507 0.08807832453999254 SFATSFHLPI 10 Unmodified _SFATSFHLPI_ 0 0 0 REV__ENST00000392750.6_2_3:167437948-167437999:-|nuORF REV__ENST00000392750.6_2_3:167437948-167437999:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2933349609375 2 560.295299 1118.57605 NaN NaN NaN NaN NaN NaN NaN 39.541 1 39.244 38.744 39.744 -0.29716 0 0 0 0.83398 1 20860 20860 10.824 0.75 1 + 57846 26400 38585 39461 67508 67508 0.02150029477343196 SFAWCSCCMGQ 11 Unmodified _SFAWCSCCMGQ_ 0 0 0 REV__CTSF|p.G293C|1|0.29|ENSG00000174080|chr11:66565918-66565918|C/A|missense_variant REV__CTSF|p.G293C|1|0.29|ENSG00000174080|chr11:66565918-66565918|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.1427612304688 3 408.143124 1221.40754 0.32335 0.00013197 0.92778 0.00037867 1.2511 0.00051064 408.1434192756333 59.92 0.30989 59.92 59.736 60.046 0 23 14 2 0 0 0 0.74203 1 33350 33350 0.08335 0 1 1938000 + 57847 16900 38586 39462 67509 67509 -0.19430603086175324 SFAYTPAVSF 10 Unmodified _SFAYTPAVSF_ 0 0 0 ENSG00000154134|ENST00000397801|ROBO3;nc|ENSG00000154134|Q96MS0-2|ROBO3 ENSG00000154134|ENST00000397801|ROBO3 ENSG00000154134|ENST00000397801|ROBO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2659301757812 2 545.266207 1088.51786 0.29175 0.00015908 -1.0011 -0.00054587 -0.70935 -0.00038678 545.26551220248 85.223 0.3341 84.721 84.53 84.864 -0.5015 40 18 3 0 0 0 0.31022 1 46665 46665 26.884 3.7352 1 15309000 57848 6300 38587 39463 67510 67510 -0.02285652167961416 SFCFFGRG 8 Unmodified _SFCFFGRG_ 0 0 0 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 ENSG00000136367|ENST00000419474|ZFHX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.7073364257812 2 460.707805 919.401058 NaN NaN NaN NaN NaN NaN NaN 90.814 1 90.319 89.819 90.819 -0.49457 0 0 0 0.95607 1 49640 49640 9.3474 0 1 57849 4816 38588 39464 67511 67511 -0.06186668868679135 SFCHHCATM 9 Unmodified _SFCHHCATM_ 0 0 0 REV__ENST00000270139.7_1_21:34730136-34730586:+|nuORF REV__ENST00000270139.7_1_21:34730136-34730586:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2659301757812 2 518.693515 1035.37248 0.92903 0.00048188 1.1017 0.00057145 2.0307 0.0010533 518.6939752095229 39.357 0.26082 34.906 34.782 35.042 -4.4509 20 15 2 0 0 0 0.21367 1 23365 23365 4.756 0 1 6312800 + 57850 25131 38589 39465 67512 67512 -0.14379477831812437 SFCQILYDH 9 Unmodified _SFCQILYDH_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2559204101562 2 563.255317 1124.49608 0.10424 5.8713E-05 -0.56614 -0.00031888 -0.4619 -0.00026017 563.2554496090515 41.368 0.24649 41.065 40.946 41.192 -0.30304 26 11 3 0 0 0 0.34999 1 21927 21927 14.838 0.93222 1 5161800 57851 4368 38590 39466 67513 67513 -0.061187801881942505 SFCRYNTSCS 10 Unmodified _SFCRYNTSCS_ 0 0 0 nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-4|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.232666015625 2 584.231516 1166.44848 0.2328 0.00013601 1.2726 0.00074348 1.5054 0.00087949 584.2321422313521 100.68 0.14104 100.55 100.46 100.6 -0.13293 11 5 3 0 0 0 0.67033 1 54958 54958 6.2058 1.4498 1 6001500 57852 4985 38591 39467 67514 67514 -0.12808802450672374 SFCSIDCTTI 10 Unmodified _SFCSIDCTTI_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2323608398438 2 545.233193 1088.45183 0.40632 0.00022154 -0.44952 -0.00024509 -0.043197 -2.3553E-05 545.2331387601233 50.087 0.39944 50.087 49.883 50.282 0 55 18 4 0 0 0 0.44373 1 27535 27535 19.257 2.3147 1 27981000 57853 4011 38592 39468 67515 67515 -0.08885552396668572 SFCSIDCTTI 10 Unmodified _SFCSIDCTTI_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 545.233193 1088.45183 0.66679 0.00036356 -0.86447 -0.00047134 -0.19768 -0.00010778 545.7336185388151 50.523 0.16268 50.11 50.051 50.214 -0.41351 0.01131 -0.00038954 NaN 19.257 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1174200 57854 4011 38592 39468 -0.08885552396668572 SFCTDYSLTH 10 Unmodified _SFCTDYSLTH_ 0 0 0 REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B REV__nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2714233398438 2 587.247689 1172.48082 0.70237 0.00041247 -1.4603 -0.00085756 -0.75793 -0.00044509 587.2463012299162 90.324 0.16257 90.366 90.272 90.435 0.042183 7 5 2 0 0 0 0.23566 1 50243 50243 7.2892 0 1 1341800 + 57855 23758 38593 39469 67516 67516 -0.09851691776043481 SFDAEEFF 8 Unmodified _SFDAEEFF_ 0 0 0 REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF REV__ENST00000529262.5_1_6:135518089-135539115:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2059020996094 2 496.205815 990.397078 0.86783 0.00043062 -0.68265 -0.00033874 0.18518 9.1888E-05 496.20544855870406 54.677 0.28115 54.677 54.484 54.765 0 26 11 3 0 0 0 0.61462 1 30319 30319 24.674 3.8027 1 5011800 + 57856 19157 38594 39470 67517 67517 -0.0985047988142469 SFDAHLTEL 9 Unmodified _SFDAHLTEL_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7540283203125 2 516.753464 1031.49238 0.92964 0.0004804 0.73263 0.00037859 1.6623 0.00085898 516.7538456609428 54.327 0.50879 54.327 54.132 54.641 0 32 22 2 0 0 0 0.013323 1 30120 30120 71.134 32.982 1 33134000 57857 7793 38595 39471 67518 67518 -0.02211126690394849 SFDAHLTEL 9 Unmodified _SFDAHLTEL_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7535400390625 2 516.753464 1031.49238 0.05124 2.6478E-05 0.57394 0.00029658 0.62518 0.00032306 516.7536593740997 54.83 0.24024 54.363 54.242 54.482 -0.46664 18 11 2 0 0 0 0.10734 1 29746 29746 32.305 9.1571 1 3123800 57858 7793 38595 39471 67519 67519 -0.02211126690394849 SFDAHLTEL 9 Unmodified _SFDAHLTEL_ 0 0 0 nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 nc|ENSG00000168710|O43865-2|AHCYL1 MSMS AL20221201_MKP_PDAC_01 4 516.753662109375 2 516.753464 1031.49238 NaN NaN NaN NaN NaN NaN NaN 61.32 1 55.172 54.672 55.672 -6.1478 0 0 0 0.065563 1 39493 39493 52.268 16.224 1 57859 7793 38595 39471 67520 67520 -0.02211126690394849 SFDARFDVSF 10 Unmodified _SFDARFDVSF_ 0 0 0 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7775268554688 2 595.77747 1189.54039 0.19562 0.00011655 -1.6563 -0.00098678 -1.4607 -0.00087023 595.7754427233829 60.133 0.25882 59.643 59.527 59.786 -0.49079 28 12 3 0 0 0 0.36296 1 32715 32715 23.79 2.2528 1 13436000 + 57860 17299 38596 39472 67521 67521 -0.046800527703453554 SFDARFDVSF 10 Unmodified _SFDARFDVSF_ 0 0 0 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.5206604003906 3 397.520739 1189.54039 0.13905 5.5274E-05 -1.5069 -0.00059901 -1.3678 -0.00054374 397.5201271236648 60.13 0.16081 59.639 59.566 59.726 -0.49079 11 7 2 0 0 0 0.42143 1 32762 32762 13.519 0 1 4123000 + 57861 17299 38596 39472 67522 67522 -0.046800527703453554 SFDATGSGF 9 Unmodified _SFDATGSGF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.3724975585938 1 888.373389 887.366112 -0.30109 -0.00026748 0.37441 0.00033262 0.07332 6.5136E-05 888.3738682816606 45.143 0.32936 45.143 44.959 45.288 0 40 16 3 0 0 0 0.00032477 2 24523 24523;24625 147.83 82.596 1 26823000 57862 16412 38597 39473 67523;67524 67523 -0.08207633195638664 SFDATGSGF 9 Unmodified _SFDATGSGF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 888.3744506835938 1 888.373389 887.366112 0.29346 0.0002607 0.68411 0.00060774 0.97757 0.00086844 888.3741481970128 52.948 0.41357 47.143 46.921 47.334 -5.8042 40 22 2 0 0 0 0.0018186 2 33447 33329;33447 133.7 66.358 1 69166000 57863 16412 38597 39473 67525;67526 67526 -0.08207633195638664 SFDAVLEAL 9 Unmodified _SFDAVLEAL_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4970703125 1 964.498589 963.491313 0.16863 0.00016264 -0.71682 -0.00069137 -0.54819 -0.00052873 964.4976129743609 89.515 0.16997 89.515 89.404 89.574 0 14 10 2 0 0 0 0.49272 1 49492 49492 7.9102 2.6795 1 520420 57864 4369 38598 39474 67527 67527 0.008106589407248066 SFDAVLEAL 9 Unmodified _SFDAVLEAL_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14020678-14030767:+|nuORF nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7529296875 2 482.752933 963.491313 NaN NaN NaN NaN NaN NaN NaN 90.089 1 89.588 89.088 90.088 -0.50171 0 0 0 0.7243 1 49248 49248 8.5933 2.8329 1 57865 4369 38598 39474 67528 67528 0.008106589407248066 SFDAVQLLL 9 Unmodified _SFDAVQLLL_ 0 0 0 ENST00000338963.6_1_15:56209053-56209131:-|nuORF ENST00000338963.6_1_15:56209053-56209131:-|nuORF ENST00000338963.6_1_15:56209053-56209131:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 503.2857055664062 2 503.2844 1004.55425 NaN NaN NaN NaN NaN NaN NaN 80.442 1 74.266 73.766 74.766 -6.1757 0 0 0 0.12337 1 52776 52776 39.957 1.9833 1 57866 11945 38599 39475 67529 67529 0.052152247287722275 SFDAYLEEEV 10 Unmodified _SFDAYLEEEV_ 0 0 0 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2669677734375 2 601.266601 1200.51865 0.28601 0.00017197 1.772 0.0010655 2.058 0.0012374 601.2673999342517 55.667 0.29153 55.189 55.048 55.34 -0.47798 32 13 3 0 0 0 0.46514 1 30189 30189 18.146 1.0335 1 3981000 57867 9178 38600 39476 67530 67530 -0.0735890230955647 SFDDTNEKF 9 Unmodified _SFDDTNEKF_ 0 0 0 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 ENSG00000100426|ENST00000216268|ZBED4 MSMS AL20221201_MKP_PDAC_01 4 551.7371826171875 2 551.738011 1101.46147 NaN NaN NaN NaN NaN NaN NaN 38.718 1 34.268 33.768 34.768 -4.4509 0 0 0 0.019104 1 22885 22885 79.596 46.811 1 57868 1825 38601 39477 67531 67531 -0.08520324795290435 SFDEDDRYWW 10 Unmodified _SFDEDDRYWW_ 0 0 0 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 ENSG00000171487|ENST00000390649|NLRP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 709.7872314453125 2 709.786024 1417.55749 NaN NaN NaN NaN NaN NaN NaN 63.324 1 63.324 62.824 63.824 0 0 0 0 0.99091 1 35321 35321 1.6526 0.17072 1 57869 8106 38602 39478 67532 67532 -0.13458176955191448 SFDETCTRF 9 Carbamidomethyl (C) _SFDETC(Carbamidomethyl (C))TRF_ SFDETC(1)TRF SFDETC(52)TRF 0 1 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7453002929688 2 581.745313 1161.47607 0.15118 8.7948E-05 -0.4592 -0.00026713 -0.30802 -0.00017919 581.7452663434698 37.523 0.31339 37.523 37.389 37.702 0 57 16 5 0 0 0 0.036857 1 19963 19963 51.63 7.2228 1 70543000 57870 5293;16515 38603 39479 67533 67533 544 -0.09820575918774921 SFDETCTRF 9 Carbamidomethyl (C) _SFDETC(Carbamidomethyl (C))TRF_ SFDETC(1)TRF SFDETC(80)TRF 0 1 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7438354492188 2 581.745313 1161.47607 0.81013 0.00047129 -0.6001 -0.0003491 0.21004 0.00012219 581.7451645809133 42.919 0.57925 38.235 37.994 38.573 -4.6846 131 37 5 0 0 0 0.010301 3 25859 25859;25995;26125 79.596 22.185 1 336080000 57871 5293;16515 38603 39479 67534;67535;67536 67534 544 -0.09820575918774921 SFDETVTHF 9 Unmodified _SFDETVTHF_ 0 0 0 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 ENSG00000163781|ENST00000260810|TOPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7440185546875 2 541.743096 1081.47164 0.46171 0.00025013 -0.20629 -0.00011176 0.25542 0.00013837 541.7429038557301 47.979 0.34716 47.979 47.745 48.092 0 40 16 3 0 0 0 0.012148 1 26288 26288 74.423 49.023 1 11698000 57872 7064 38604 39480 67537 67537 -0.06583717070043349 SFDEWRSLE 9 Unmodified _SFDEWRSLE_ 0 0 0 REV__ENST00000285208.8_1_3:133547410-133547644:-|nuORF REV__ENST00000285208.8_1_3:133547410-133547644:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2683715820312 2 584.767103 1167.51965 -0.58727 -0.00034342 3.2676 0.0019108 2.6803 0.0015674 584.76948059502 56.571 0.20408 56.085 56.061 56.265 -0.48554 14 12 2 0 0 0 0.16418 1 30748 30748 25.399 2.2509 1 6633500 + 57873 25214 38605 39481 67538 67538 -0.057406431499885 SFDFGPNEKQ 10 Unmodified _SFDFGPNEKQ_ 0 0 0 REV__ENSG00000170584|ENST00000302764|NUDCD2 REV__ENSG00000170584|ENST00000302764|NUDCD2 MSMS AL20221201_MKP_PDAC_01 4 390.18212890625 3 390.180494 1167.51965 NaN NaN NaN NaN NaN NaN NaN 21.601 1 18.866 18.366 19.366 -2.7348 0 0 0 0.75165 1 11584 11584 9.2438 0.26753 1 + 57874 22494 38606 39482 67539 67539 -0.057406431500112376 SFDFHEHC 8 Unmodified _SFDFHEHC_ 0 0 0 ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F ENSG00000198825|ENST00000650623|INPP5F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.6995239257812 2 511.195259 1020.37597 0.70945 0.00036267 0.020501 1.048E-05 0.72995 0.00037315 511.19528940011764 73.367 0.36171 73.367 73.229 73.591 0 71 19 5 0 0 0 0.80676 1 40876 40876 2.5775 0 1 5558900 57875 10164 38607 39483 67540 67540 -0.1334076846193284 SFDGIIAMM 9 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ SFDGIIAM(1)M(1) SFDGIIAM(64)M(64) 0 0 2 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7247924804688 2 508.725003 1015.43545 0.6492 0.00033026 -1.0055 -0.00051155 -0.35634 -0.00018128 508.72453873204864 53.569 0.50491 53.569 53.353 53.858 0 81 23 5 0 0 0 0.019979 1 29769 29769 63.563 43.109 1 37862000 57876 10427 38608 39484 67541 67541 1692;1693 -0.07164633562751987 SFDGIIAMM 9 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ SFDGIIAM(1)M(1) SFDGIIAM(74)M(74) 0 0 2 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7262878417969 2 508.725003 1015.43545 -0.059734 -3.0388E-05 0.6403 0.00032574 0.58056 0.00029535 508.7254599591045 54.164 0.29371 53.697 53.567 53.861 -0.46664 38 14 3 0 0 0 0.012158 1 29298 29298 74.396 53.943 1 17225000 57877 10427 38608 39484 67542 67542 1692;1693 -0.07164633562751987 SFDGIIAMM 9 2 Oxidation (M) _SFDGIIAM(Oxidation (M))M(Oxidation (M))_ SFDGIIAM(1)M(1) SFDGIIAM(54)M(54) 0 0 2 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7254333496094 2 508.725003 1015.43545 0.7268 0.00036974 0.52132 0.00026521 1.2481 0.00063495 508.7251898480818 61.805 0.45804 55.629 55.384 55.843 -6.1757 40 23 2 0 0 0 0.03327 1 39796 39796 53.576 37.728 1 31544000 57878 10427 38608 39484 67543 67543 1692;1693 -0.07164633562751987 SFDGIIAMM 9 Unmodified _SFDGIIAMM_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 984.4542236328125 1 984.452901 983.445625 0.31414 0.00030926 -0.17628 -0.00017354 0.13786 0.00013572 984.453179591887 92.755 0.24707 92.298 92.129 92.376 -0.4574 22 10 3 0 0 0 0.14602 1 50642 50642 28.487 16.847 1 1173600 57879 10427 38608 39485 67544 67544 -0.04676025837522957 SFDGIIAMM 9 Unmodified _SFDGIIAMM_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.4535522460938 1 984.452901 983.445625 1.1832 0.0011648 -0.64675 -0.0006367 0.53646 0.00052812 984.4529145786724 100.02 0.21623 93.848 93.74 93.957 -6.1757 44 14 4 0 0 0 0.0090851 1 66738 66738 85.357 38.436 1 363100000 57880 10427 38608 39485 67545 67545 -0.04676025837522957 SFDGIIAMM 9 Unmodified _SFDGIIAMM_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7302551269531 2 492.730089 983.445625 1.1587 0.00057092 -0.48447 -0.00023871 0.67422 0.00033221 492.73019598461974 100.02 0.16974 93.842 93.769 93.938 -6.1757 24 11 3 0 0 0 0.038285 1 66769 66769 50.855 26.181 1 66813000 57881 10427 38608 39485 67546 67546 -0.04676025837522957 SFDGIIAMM 9 Oxidation (M) _SFDGIIAM(Oxidation (M))M_ SFDGIIAM(0.907)M(0.093) SFDGIIAM(9.9)M(-9.9) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7276306152344 2 500.727546 999.440539 1.1294 0.00056551 -0.92048 -0.00046091 0.20889 0.0001046 500.72739097204783 83.445 0.54271 77.269 77.024 77.567 -6.1757 65 28 4 0 0 0 0.016184 3 54896 54778;54896;55028 67.344 35.227 2 27159000 57882 10427 38608 39486 67547;67548;67549 67548 1692;1693 -0.05920329700131788 SFDGIIAMM 9 Oxidation (M) _SFDGIIAM(Oxidation (M))M_ SFDGIIAM(0.921)M(0.079) SFDGIIAM(11)M(-11) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MSMS AL20221201_MKP_PDAC_01 4 500.7291564941406 2 500.727546 999.440539 NaN NaN NaN NaN NaN NaN NaN 83.875 1 77.699 77.199 78.199 -6.1757 0 0 0 0.020354 1 55164 55164 77.984 47.76 2 57883 10427 38608 39486 67550 67550 1692;1693 -0.05920329700131788 SFDGIIAMM 9 Oxidation (M) _SFDGIIAM(Oxidation (M))M_ SFDGIIAM(0.933)M(0.067) SFDGIIAM(11)M(-11) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MSMS AL20221201_MKP_PDAC_01 4 500.7277526855469 2 500.727546 999.440539 NaN NaN NaN NaN NaN NaN NaN 84.064 1 77.888 77.388 78.388 -6.1757 0 0 0 0.011967 1 55289 55289 89.427 51.276 2 57884 10427 38608 39486 67551 67551 1692;1693 -0.05920329700131788 SFDGSAAD 8 Unmodified _SFDGSAAD_ 0 0 0 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 ENSG00000136535|ENST00000389554|TBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.1537780761719 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 31.636 1 31.507 31.007 32.007 -0.12915 0 0 0 0.97444 1 16455 16455 0.79363 0 1 57885 4832 38609 39487 67552 67552 -0.10080181638147678 SFDGWLWF 8 Unmodified _SFDGWLWF_ 0 0 0 REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF REV__ENST00000341421.7_1_3:42201705-42201891:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2428588867188 2 529.242535 1056.47052 0.17126 9.064E-05 0.41759 0.00022101 0.58885 0.00031165 529.2428058618054 93.227 1.1979 87.051 86.608 87.806 -6.1757 397 79 7 0 0 0 0.80143 1 61486 61486 5.7604 5.7604 1 484680000 + 57886 25706 38610 39488 67553 67553 -0.05545886648292253 SFDHSMRAFL 10 Unmodified _SFDHSMRAFL_ 0 0 0 ENST00000465118.6_1_1:85039766-85039835:-|nuORF ENST00000465118.6_1_1:85039766-85039835:-|nuORF ENST00000465118.6_1_1:85039766-85039835:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7811279296875 2 605.787315 1209.56008 NaN NaN NaN NaN NaN NaN NaN 64.841 1 64.841 64.341 65.341 0 0 0 0 0.94014 1 36166 36166 6.2058 0.9089 1 57887 13729 38611 39489 67554 67554 -0.03632000031211646 SFDKTASVF 9 Unmodified _SFDKTASVF_ 0 0 0 ENST00000506672.5_1_5:177302663-177310828:+|nuORF;ENSG00000051596|ENST00000265097|THOC3;nc|ENSG00000051596|Q96J01-2|THOC3 ENST00000506672.5_1_5:177302663-177310828:+|nuORF ENST00000506672.5_1_5:177302663-177310828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.25146484375 2 501.250557 1000.48656 0.94015 0.00047125 -0.47442 -0.0002378 0.46574 0.00023345 501.250678064656 49.911 0.37174 44.372 44.236 44.607 -5.5391 41 23 2 0 0 0 0.017075 2 31182 31182;31326 66.457 26.507 1 21952000 57888 735 38612 39490 67555;67556 67555 -0.013662252020367305 SFDLAIKGV 9 Unmodified _SFDLAIKGV_ 0 0 0 ENSG00000107789|ENST00000371996|MINPP1;nc|ENSG00000107789|Q9UNW1-4|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 ENSG00000107789|ENST00000371996|MINPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2711181640625 2 475.271293 948.528032 0.69402 0.00032985 0.043765 2.08E-05 0.73779 0.00035065 475.2713872464533 62.059 0.27838 61.571 61.448 61.726 -0.48764 28 12 3 0 0 0 0.039985 1 33792 33792 49.933 25.912 1 3938000 57889 2518 38613 39491 67557 67557 0.05170955557287016 SFDLAKVLL 9 Unmodified _SFDLAKVLL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3018493652344 2 503.302593 1004.59063 0.053103 2.6727E-05 1.1575 0.00058258 1.2106 0.00060931 503.3030039732174 87.98 0.21013 88.033 87.908 88.118 0.053352 12 8 2 0 0 0 0.013609 1 48908 48908 70.332 30.382 1 17829000 57890 3605 38614 39492 67558 67558 0.08852101625473097 SFDLAKVLL 9 Unmodified _SFDLAKVLL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3046264648438 2 503.302593 1004.59063 NaN NaN NaN NaN NaN NaN NaN 88.118 1 88.171 87.671 88.671 0.053352 0 0 0 0.34649 1 49017 49017 22.736 8.8302 1 57891 3605 38614 39492 67559 67559 0.08852101625473097 SFDLAKVLL 9 Unmodified _SFDLAKVLL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.3026123046875 2 503.302593 1004.59063 1.0255 0.00051614 -0.70391 -0.00035428 0.3216 0.00016186 503.3021399984417 99.313 0.16666 93.138 93.048 93.214 -6.1757 20 10 3 0 0 0 0.009483 1 66087 66087 81.89 41.933 1 106330000 57892 3605 38614 39492 67560 67560 0.08852101625473097 SFDLAKVLL 9 Unmodified _SFDLAKVLL_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.302593 1004.59063 0.038534 1.9394E-05 1.9288 0.00097076 1.9673 0.00099016 503.30370128367235 88.568 0.31477 88.064 87.89 88.205 -0.50423 0.01551 0.00012827 NaN 70.332 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1075000 57893 3605 38614 39492 0.08852101625473097 SFDLLPREF 9 Unmodified _SFDLLPREF_ 0 0 0 nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2929077148438 2 562.292756 1122.57096 -0.60706 -0.00034134 0.35022 0.00019693 -0.25684 -0.00014442 562.2930653268568 78.04 0.38162 77.558 77.353 77.735 -0.4826 56 30 2 0 0 0 0.0086209 2 42755 42649;42755 89.401 26.828 1 9766100 57894 16155 38615 39493 67561;67562 67562 0.014577256147049411 SFDLLPREF 9 Unmodified _SFDLLPREF_ 0 0 0 nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.293212890625 2 562.292756 1122.57096 0.59968 0.00033719 0.45806 0.00025756 1.0577 0.00059476 562.2934367533385 77.427 0.27957 77.477 77.372 77.652 0.05011 18 11 2 0 0 0 0.062454 1 42767 42767 41.956 16.556 1 2157600 57895 16155 38615 39493 67563 67563 0.014577256147049411 SFDLLVKNL 9 Unmodified _SFDLLVKNL_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.8052978515625 2 524.8055 1047.59645 0.16453 8.6346E-05 0.63027 0.00033077 0.7948 0.00041712 524.8055602554908 75.467 0.57183 75.513 75.266 75.838 0.045959 30 13 3 0 0 0 0.0082353 1 41609 41609 96.111 52.253 1 3344100 57896 3200 38616 39494 67564 67564 0.07455200137133033 SFDLTVTQL 9 Unmodified _SFDLTVTQL_ 0 0 0 SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant;ENSG00000138449|ENST00000261024|SLC40A1 SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2714233398438 2 512.27149 1022.52843 0.26899 0.0001378 -0.25685 -0.00013158 0.012138 6.218E-06 512.2711743721608 77.932 0.2821 77.932 77.794 78.076 0 19 12 2 0 0 0 0.23158 1 43302 43302 20.454 3.5113 1 954760 57897 5058 38617 39495 67565 67565 0.018063304864881502 SFDLTVTQL 9 Unmodified _SFDLTVTQL_ 0 0 0 SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant;ENSG00000138449|ENST00000261024|SLC40A1 SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant SLC40A1|p.L469P|1|0.24|ENSG00000138449|chr2:189562188-189562188|A/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.271240234375 2 512.27149 1022.52843 NaN NaN NaN NaN NaN NaN NaN 78.445 1 77.959 77.459 78.459 -0.48596 0 0 0 0.36554 1 42964 42964 21.747 4.8044 1 57898 5058 38617 39495 67566 67566 0.018063304864881502 SFDMAQVF 8 Oxidation (M) _SFDM(Oxidation (M))AQVF_ SFDM(1)AQVF SFDM(44)AQVF 0 0 1 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7102355957031 2 480.710211 959.405868 -0.51801 -0.00024901 0.4768 0.0002292 -0.041211 -1.9811E-05 480.71069422329265 55.471 0.34919 55.471 55.262 55.611 0 39 15 3 0 0 0 0.40035 2 30850 30737;30850 44.407 29.825 1 3467200 57899 9206 38618 39496 67567;67568 67568 1531 -0.0754582951658449 SFDMAQVF 8 Unmodified _SFDMAQVF_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7127380371094 2 472.712753 943.410954 1.0977 0.00051889 0.99757 0.00047156 2.0953 0.00099046 472.71254264084786 86.133 0.39069 79.957 79.727 80.118 -6.1757 32 21 2 0 0 0 0.40035 1 56777 56777 44.407 28.639 1 6936400 57900 9206 38618 39497 67569 67569 -0.06301525653975659 SFDPFDKLNF 10 Unmodified _SFDPFDKLNF_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.2951049804688 2 615.295496 1228.57644 0.55515 0.00034158 0.35742 0.00021992 0.91258 0.00056151 615.2953272473362 92.29 0.6624 91.809 91.525 92.187 -0.48092 73 31 4 0 0 0 0.60623 1 50478 50478 10.824 6.0679 1 2235900 + 57901 21988 38619 39498 67570 67570 -0.028705955934810845 SFDPFDKLNF 10 Unmodified _SFDPFDKLNF_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.2957763671875 2 615.295496 1228.57644 1.4436 0.00088822 -0.5654 -0.00034789 0.87817 0.00054033 615.2950867080491 91.758 0.4445 91.794 91.613 92.057 0.035698 45 15 4 0 0 0 0.42068 2 51110 51009;51110 20.454 11.708 1 21611000 + 57902 21988 38619 39498 67571;67572 67572 -0.028705955934810845 SFDPFDKLNF 10 Unmodified _SFDPFDKLNF_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 615.295496 1228.57644 0.55515 0.00034158 0.35742 0.00021992 0.91258 0.00056151 615.2953272473362 92.29 0.6624 91.809 91.525 92.187 -0.48092 0.0074513 0.0005443 NaN 20.454 73 31 4 NaN NaN NaN NaN 0 NaN NaN 0 2235900 + 57903 21988 38619 39498 -0.028705955934810845 SFDPKDIFL 9 Unmodified _SFDPKDIFL_ 0 0 0 nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7839965820312 2 541.281857 1080.54916 0.78977 0.00042749 -0.61044 -0.00033042 0.17933 9.7066E-05 541.2815687905046 79.593 0.41322 79.104 78.844 79.257 -0.48933 31 17 3 0 0 0 0.51371 1 43548 43548 10.074 3.7198 1 1379100 57904 10105 38620 39499 67573 67573 0.012109208661286175 SFDPSRTF 8 Unmodified _SFDPSRTF_ 0 0 0 ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3 ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7263793945312 2 478.727249 955.439946 0.97829 0.00046833 -2.1604 -0.0010342 -1.1821 -0.00056591 478.7261101504142 42.63 0.21209 42.63 42.544 42.756 0 14 10 2 0 0 0 0.60622 1 23114 23114 25.399 4.9457 1 1397200 57905 1059 38621 39500 67574 67574 -0.03955665033322475 SFDPSRTF 8 Unmodified _SFDPSRTF_ 0 0 0 ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-2|TCF3 ENSG00000071564|ENST00000262965|TCF3 ENSG00000071564|ENST00000262965|TCF3 MSMS AL20221201_MKP_PDAC_01 4 478.7265319824219 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 48.462 1 43.18 42.68 43.68 -5.2825 0 0 0 0.62748 1 30192 30192 32.305 3.8186 1 57906 1059 38621 39500 67575 67575 -0.03955665033322475 SFDPWYRAEQ 10 Unmodified _SFDPWYRAEQ_ 0 0 0 ENST00000349736.9_1_20:463126-463270:-|nuORF ENST00000349736.9_1_20:463126-463270:-|nuORF ENST00000349736.9_1_20:463126-463270:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5328979492188 3 433.531527 1297.57275 0.56133 0.00024335 2.7332 0.0011849 3.2946 0.0014283 433.8670776565603 28.606 0.14968 28.544 28.473 28.622 -0.062159 7 5 2 0 0 0 0.71123 1 14777 14777 0.69767 0 1 2014700 57907 12043 38622 39501 67576 67576 -0.06413265367314125 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2324829101562 2 477.232364 952.450176 0.89728 0.00042821 -0.20782 -9.9178E-05 0.68946 0.00032903 477.23222524807073 54.677 0.41288 54.677 54.44 54.852 0 61 17 5 0 0 0 0.0095811 2 30374 30268;30374 81.613 38.857 1 59075000 57908 6246 38623 39502 67577;67578 67578 -0.02795102098764346 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 953.4578857421875 1 953.457453 952.450176 0.41353 0.00039429 0.097833 9.3279E-05 0.51137 0.00048757 953.4575646766174 54.677 0.34983 54.677 54.462 54.812 0 36 14 3 0 0 0 0.0085164 2 30389 30282;30389 99.799 38.441 1 15063000 57909 6246 38623 39502 67579;67580 67580 -0.02795102098764346 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2322387695312 2 477.232364 952.450176 0.45887 0.00021899 0.0115 5.488E-06 0.47037 0.00022448 477.23242936533796 55.237 0.31623 54.759 54.629 54.945 -0.47798 30 14 3 0 0 0 0.038285 1 29936 29936 50.855 23.971 1 2734500 57910 6246 38623 39502 67581 67581 -0.02795102098764346 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.4593505859375 1 953.457453 952.450176 0.67649 0.000645 0.14378 0.00013709 0.82027 0.00078209 953.4576786996698 63.118 0.39426 56.942 56.7 57.094 -6.1757 34 20 2 0 0 0 0.0071894 2 40759 40634;40759 111.29 59.019 1 36975000 57911 6246 38623 39502 67582;67583 67583 -0.02795102098764346 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2327880859375 2 477.232364 952.450176 0.99581 0.00047523 -0.56843 -0.00027127 0.42739 0.00020396 477.2321789493894 63.061 0.56716 56.885 56.563 57.13 -6.1757 69 29 3 0 0 0 0.013323 2 40681 40681;40829 71.134 37.018 1 151650000 57912 6246 38623 39502 67584;67585 67584 -0.02795102098764346 SFDSALQSV 9 Unmodified _SFDSALQSV_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 477.232364 952.450176 0.36698 0.00017514 -0.78191 -0.00037315 -0.41493 -0.00019802 477.2320483615684 54.925 0.17501 54.856 54.764 54.939 -0.068741 0.092063 -0.0005882 NaN 81.613 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 899670 57913 6246 38623 39502 -0.02795102098764346 SFDSGSVRL 9 Unmodified _SFDSGSVRL_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2463073730469 2 484.245806 966.47706 0.3865 0.00018716 -0.55683 -0.00026964 -0.17033 -8.2482E-05 484.24552516505537 43.201 0.29663 43.201 43.102 43.399 0 31 14 3 0 0 0 0.0082475 1 23424 23424 92.653 36.476 1 11996000 57914 3321 38624 39503 67586 67586 -0.007519934875631407 SFDSGSVRL 9 Unmodified _SFDSGSVRL_ 0 0 0 ENSG00000117595|ENST00000367021|IRF6;nc|ENSG00000117595|O14896-2|IRF6 ENSG00000117595|ENST00000367021|IRF6 ENSG00000117595|ENST00000367021|IRF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2458801269531 2 484.245806 966.47706 0.90555 0.00043851 -0.21483 -0.00010403 0.69072 0.00033448 484.2454374613781 48.711 0.3403 43.315 43.101 43.441 -5.3961 27 19 2 0 0 0 0.0094097 1 30324 30324 82.529 34.781 1 22053000 57915 3321 38624 39503 67587 67587 -0.007519934875631407 SFDSTVRL 8 Unmodified _SFDSTVRL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2421875 2 462.742899 923.471246 0.72526 0.00033561 -0.77144 -0.00035698 -0.04618 -2.137E-05 462.74255831772376 45.757 0.5599 45.757 45.379 45.939 0 88 29 5 0 0 0 0.1875 2 24880 24880;24989 74.929 16.25 1 289900000 57916 1614 38625 39504 67588;67589 67588 0.006449080007655539 SFDSTVRL 8 Unmodified _SFDSTVRL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.477783203125 1 924.478522 923.471246 0.36727 0.00033953 0.52115 0.00048179 0.88842 0.00082132 924.4788331538468 45.727 0.17469 45.727 45.644 45.819 0 12 8 2 0 0 0 0.19493 1 24954 24954 71.922 17.149 1 2363500 57917 1614 38625 39504 67590 67590 0.006449080007655539 SFDSTVRL 8 Unmodified _SFDSTVRL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7431640625 2 462.742899 923.471246 0.051279 2.3729E-05 0.099537 4.606E-05 0.15082 6.9789E-05 462.7430083410507 45.975 0.33472 45.65 45.478 45.813 -0.32425 45 17 4 0 0 0 0.15594 2 24657 24546;24657 85.272 17.191 1 53160000 57918 1614 38625 39504 67591;67592 67592 0.006449080007655539 SFDSTVRL 8 Unmodified _SFDSTVRL_ 0 0 0 ENSG00000177565|ENST00000457928|TBL1XR1;ENSG00000092377|ENST00000383032|TBL1Y;nc|ENSG00000101849|O60907-2|TBL1X;ENSG00000101849|ENST00000645353|TBL1X ENSG00000177565|ENST00000457928|TBL1XR1 ENSG00000177565|ENST00000457928|TBL1XR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7431335449219 2 462.742899 923.471246 0.61758 0.00028578 0.24314 0.00011251 0.86072 0.00039829 462.7430002379724 51.629 0.52929 45.98 45.707 46.236 -5.649 89 33 4 0 0 0 0.079485 3 32507 32377;32507;32635 108 21.036 1 464600000 57919 1614 38625 39504 67593;67594;67595 67594 0.006449080007655539 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4819946289062 1 950.482939 949.475663 -0.46185 -0.00043898 -0.16742 -0.00015913 -0.62927 -0.00059811 950.4825953645295 70.15 0.34676 70.15 70.031 70.377 0 59 29 3 0 0 0 0.010818 2 39044 39044;39154 78.149 44.047 1 8222800 57920 2669 38626 39505 67596;67597 67596 -0.0010962757631887143 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7452697753906 2 475.745108 949.475663 0.10889 5.1803E-05 -0.19357 -9.2088E-05 -0.084679 -4.0285E-05 475.7449518973201 70.148 0.31094 70.148 70.045 70.356 0 44 23 3 0 0 0 0.016184 2 39054 39054;39155 67.344 44.195 1 5797600 57921 2669 38626 39505 67598;67599 67598 -0.0010962757631887143 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 950.482421875 1 950.482939 949.475663 0.24775 0.00023548 -0.64481 -0.00061288 -0.39706 -0.0003774 950.4823062854836 70.69 0.31172 70.212 70.099 70.411 -0.47735 40 18 3 0 0 0 0.010818 2 38739 38629;38739 78.149 44.047 1 7922400 57922 2669 38626 39505 67600;67601 67601 -0.0010962757631887143 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7455139160156 2 475.745108 949.475663 0.44886 0.00021354 -0.60433 -0.00028751 -0.15547 -7.3962E-05 475.7447535434928 70.74 0.33543 70.262 70.099 70.434 -0.47735 38 19 3 0 0 0 0.016184 2 38756 38648;38756 67.344 44.195 1 4188100 57923 2669 38626 39505 67602;67603 67603 -0.0010962757631887143 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.4826049804688 1 950.482939 949.475663 -0.011187 -1.0633E-05 0.5865 0.00055746 0.57531 0.00054683 950.4828132769574 78.561 0.80776 72.385 72.142 72.95 -6.1757 87 48 2 0 0 0 0.0083938 3 51556 51297;51427;51556 108 59.651 1 31458000 57924 2669 38626 39505 67604;67605;67606 67606 -0.0010962757631887143 SFDSVPVSL 9 Unmodified _SFDSVPVSL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.744384765625 2 475.745108 949.475663 0.28153 0.00013394 0.31582 0.00015025 0.59735 0.00028419 475.7452940435632 78.545 0.60262 72.369 72.126 72.728 -6.1757 56 37 2 0 0 0 0.0082281 3 51324 51324;51456;51583 92.822 50.728 1 29282000 57925 2669 38626 39505 67607;67608;67609 67607 -0.0010962757631887143 SFDTGFTSF 9 Unmodified _SFDTGFTSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7195434570312 2 504.71909 1007.42363 0.048353 2.4405E-05 0.75403 0.00038057 0.80238 0.00040498 504.71947013651146 71.341 0.46075 70.863 70.636 71.097 -0.47736 58 19 4 0 0 0 0.042911 1 38995 38995 48.346 6.2513 1 16363000 57926 2387 38627 39506 67610 67610 -0.07978790990091511 SFDTGFTSF 9 Unmodified _SFDTGFTSF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000487480.1_1_7:157174896-157178337:+|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7196655273438 2 504.71909 1007.42363 1.3095 0.00066095 0.33349 0.00016832 1.643 0.00082927 504.7191652729819 79.212 0.70712 73.036 72.68 73.387 -6.1757 108 39 4 0 0 0 0.0095811 2 51882 51882;52006 81.613 30.758 1 102580000 57927 2387 38627 39506 67611;67612 67611 -0.07978790990091511 SFDTIPTYL 9 Unmodified _SFDTIPTYL_ 0 0 0 nc|ENSG00000160179|P45844-8|ABCG1;UBE2G2-ABCG1|3|fusion;UBE2G2-ABCG1|4|fusion;UBE2G2-ABCG1|1|fusion;UBE2G2-ABCG1|2|fusion;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;ENST00000496783.1_1_21:43708308-43714771:+|nuORF nc|ENSG00000160179|P45844-8|ABCG1 nc|ENSG00000160179|P45844-8|ABCG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2445068359375 2 528.76604 1055.51753 1.1611 0.00061394 0.50772 0.00026846 1.6688 0.0008824 528.7671284977292 86.921 0.088455 80.746 80.699 80.788 -6.1757 6 4 2 0 0 0 0.18094 1 57328 57328 28.487 16.847 1 4851200 57928 16314 38628 39507 67613 67613 -0.008010718878267653 SFECEVDPC 9 Unmodified _SFECEVDPC_ 0 0 0 REV__nc|ENSG00000184613|Q99435-4|NELL2 REV__nc|ENSG00000184613|Q99435-4|NELL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.6882934570312 2 514.688618 1027.36268 0.032052 1.6497E-05 -0.4194 -0.00021586 -0.38735 -0.00019937 514.6883276369866 84.934 0.38985 78.758 78.548 78.938 -6.1757 32 22 2 0 0 0 0.55144 1 55908 55908 4.3292 0 1 15437000 + 57929 23430 38629 39508 67614 67614 -0.14990387356169776 SFEDGFPE 8 Unmodified _SFEDGFPE_ 0 0 0 REV__ENSG00000092421|ENST00000343348|SEMA6A REV__ENSG00000092421|ENST00000343348|SEMA6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.379638671875 1 927.373054 926.365778 0.24772 0.00022973 -0.49987 -0.00046357 -0.25215 -0.00023384 927.372201336578 69.906 0.16776 69.906 69.797 69.964 0 10 7 2 0 0 0 0.79669 1 38959 38959 8.5933 1.304 1 1103400 + 57930 17910 38630 39509 67615 67615 -0.10035052915509368 SFEDGFPE 8 Unmodified _SFEDGFPE_ 0 0 0 REV__ENSG00000092421|ENST00000343348|SEMA6A REV__ENSG00000092421|ENST00000343348|SEMA6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 927.373054 926.365778 0.24772 0.00022973 -0.49987 -0.00046357 -0.25215 -0.00023384 927.372201336578 69.906 0.16776 69.906 69.797 69.964 0 0 0 NaN 8.5933 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1103400 + 57931 17910 38630 39509 -0.10035052915509368 SFEDGGSGAEY 11 Unmodified _SFEDGGSGAEY_ 0 0 0 ENST00000558575.1_1_14:75761110-75762846:+|nuORF ENST00000558575.1_1_14:75761110-75762846:+|nuORF ENST00000558575.1_1_14:75761110-75762846:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.71826171875 2 559.717276 1117.42 1.0751 0.00060175 0.49537 0.00027727 1.5705 0.00087902 559.7174266367703 42.889 0.28221 38.205 38.041 38.323 -4.6846 29 17 3 0 0 0 0.65108 1 25964 25964 8.7454 0.15213 1 9807500 57932 15280 38631 39510 67616 67616 -0.13401505554588766 SFEDLIFGRA 10 Unmodified _SFEDLIFGRA_ 0 0 0 REV__nc|ENSG00000168356|Q9UI33-2|SCN11A REV__nc|ENSG00000168356|Q9UI33-2|SCN11A MSMS AL20221201_MKP_PDAC_01 4 577.7924194335938 2 577.795663 1153.57677 NaN NaN NaN NaN NaN NaN NaN 97.592 1 91.416 90.916 91.916 -6.1757 0 0 0 0.47175 1 64674 64674 27.629 5.8822 1 + 57933 22306 38632 39511 67617 67617 0.006128241263922973 SFEEFPPV 8 Unmodified _SFEEFPPV_ 0 0 0 REV__ENST00000326495.9_1_12:109182628-109182886:-|nuORF REV__ENST00000326495.9_1_12:109182628-109182886:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2265625 2 476.226551 950.438549 NaN NaN NaN NaN NaN NaN NaN 103.31 1 103.26 102.76 103.76 -0.047928 0 0 0 0.97444 1 57371 57371 0.69038 0 1 + 57934 25560 38633 39512 67618 67618 -0.03865299122082888 SFEEKPVYI 9 Unmodified _SFEEKPVYI_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8033447265625 2 556.28714 1110.55973 -0.2429 -0.00013512 1.06 0.00058966 0.81708 0.00045453 556.2878728727303 48.715 0.27352 48.715 48.555 48.828 0 27 12 3 0 0 0 0.17275 1 26720 26720 21.747 9.2151 1 8668400 57935 2874 38634 39513 67619 67619 0.008869035205634646 SFEEKPVYI 9 Unmodified _SFEEKPVYI_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.290283203125 2 556.28714 1110.55973 0.80317 0.0004468 1.4568 0.00081039 2.26 0.0012572 556.2870874137725 54.55 0.12191 48.684 48.607 48.729 -5.8653 9 7 2 0 0 0 0.015688 1 34616 34616 67.838 27.881 1 22787000 57936 2874 38634 39513 67620 67620 0.008869035205634646 SFEFELLFT 9 Unmodified _SFEFELLFT_ 0 0 0 REV__nc|ENSG00000143127|O75578-3|ITGA10 REV__nc|ENSG00000143127|O75578-3|ITGA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7815551757812 2 566.78169 1131.54883 0.66499 0.0003769 0.82632 0.00046834 1.4913 0.00084525 566.7823719863096 85.172 0.30756 84.671 84.483 84.791 -0.5015 41 16 3 0 0 0 0.49766 2 46555 46555;46655 11.64 4.9171 1 4770300 + 57937 20605 38635 39514 67621;67622 67621 -0.011684988537354002 SFEGRHFIPH 10 Unmodified _SFEGRHFIPH_ 0 0 0 REV__ENSG00000134259|ENST00000369512|NGF REV__ENSG00000134259|ENST00000369512|NGF MSMS AL20221201_MKP_PDAC_01 4 409.5419311523438 3 409.540357 1225.59924 NaN NaN NaN NaN NaN NaN NaN 20.208 1 17.515 17.015 18.015 -2.693 0 0 0 0.96981 1 10755 10755 1.9064 0.69154 1 + 57938 19971 38636 39515 67623 67623 -0.004535316853434779 SFELQPTGPSL 11 Unmodified _SFELQPTGPSL_ 0 0 0 REV__ENSG00000099812|ENST00000215582|MISP REV__ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8719177246094 3 392.536278 1174.587 1.5657 0.00061458 1.6554 0.00064979 3.221 0.0012644 392.5368511586792 34.053 0.41396 30.068 29.824 30.238 -3.9853 57 22 3 0 0 0 0.5229 1 19684 19684 12.228 6.8249 1 19045000 + 57939 17984 38637 39516 67624 67624 0.006693870609524311 SFELWRYQFRR 11 Unmodified _SFELWRYQFRR_ 0 0 0 REV__ENSG00000102174|ENST00000379374|PHEX REV__ENSG00000102174|ENST00000379374|PHEX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 794.4125366210938 2 794.412592 1586.81063 NaN NaN NaN NaN NaN NaN NaN 85.849 1 85.849 85.349 86.349 0 0 0 0 0.9435 1 47565 47565 0 0 1 + 57940 18224 38638 39517 67625 67625 0.040697202857018056 SFELWRYQFRR 11 Unmodified _SFELWRYQFRR_ 0 0 0 REV__ENSG00000102174|ENST00000379374|PHEX REV__ENSG00000102174|ENST00000379374|PHEX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 794.4125366210938 2 794.412592 1586.81063 NaN NaN NaN NaN NaN NaN NaN 86.322 1 85.819 85.319 86.319 -0.50318 0 0 0 0.9435 1 47232 47232 0 0 1 + 57941 18224 38638 39517 67626 67626 0.040697202857018056 SFEPLYPV 8 Unmodified _SFEPLYPV_ 0 0 0 ENST00000467319.1_1_6:31727086-31727230:+|nuORF ENST00000467319.1_1_6:31727086-31727230:+|nuORF ENST00000467319.1_1_6:31727086-31727230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2450561523438 2 476.244744 950.474934 0.54835 0.00026115 -1.1154 -0.00053121 -0.56707 -0.00027006 476.2441937968326 90.866 0.34422 90.371 90.242 90.586 -0.49457 44 26 2 0 0 0 0.5284 2 49647 49647;49748 32.117 0 1 3169700 57942 13776 38639 39518 67627;67628 67627 -0.0022842222538201895 SFEPLYPV 8 Unmodified _SFEPLYPV_ 0 0 0 ENST00000467319.1_1_6:31727086-31727230:+|nuORF ENST00000467319.1_1_6:31727086-31727230:+|nuORF ENST00000467319.1_1_6:31727086-31727230:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2455444335938 2 476.244744 950.474934 1.0054 0.00047882 4.3638 0.0020783 5.3693 0.0025571 476.24761339491494 99.33 0.25234 93.154 93.009 93.261 -6.1757 23 15 2 0 0 0 0.44122 1 66092 66092 40.449 0 1 25440000 57943 13776 38639 39518 67629 67629 -0.0022842222538201895 SFEQHLSEW 9 Unmodified _SFEQHLSEW_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7651977539062 2 581.76182 1161.50909 1.6029 0.00093253 2.9141 0.0016953 4.517 0.0026278 581.7638000232885 47.664 0.29967 42.43 42.197 42.496 -5.2339 27 17 2 0 0 0 0.05447 1 29549 29549 43.858 9.4566 1 9163500 + 57944 19763 38640 39519 67630 67630 -0.06520625804432711 SFEVATEYLRL 11 Unmodified _SFEVATEYLRL_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MSMS AL20221201_MKP_PDAC_01 4 664.7836303710938 2 664.34826 1326.68197 NaN NaN NaN NaN NaN NaN NaN 77.1 1 70.925 70.425 71.425 -6.1757 0 0 0 0.71476 1 50424 50424 16.149 2.2431 1 + 57945 19178 38641 39520 67631 67631 0.03169320532151687 SFFAEHPA 8 Unmodified _SFFAEHPA_ 0 0 0 REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2117614746094 2 453.211235 904.407917 NaN NaN NaN NaN NaN NaN NaN 78.603 1 78.603 78.103 79.103 0 0 0 0 0.97444 1 43678 43678 2.5775 1.7838 1 + 57946 25605 38642 39521 67632 67632 -0.04811032716474983 SFFAKHLQTG 10 Unmodified _SFFAKHLQTG_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8021850585938 2 568.298373 1134.58219 0.62435 0.00035482 -1.307 -0.00074278 -0.68268 -0.00038797 568.800367065338 84.538 1.3627 78.362 77.403 78.766 -6.1757 157 76 3 0 0 0 0.38225 1 55267 55267 22.658 3.4011 1 46088000 57947 1923 38643 39522 67633 67633 0.020285477088464177 SFFCCYEEC 9 Unmodified _SFFCCYEEC_ 0 0 0 ENSG00000182256|ENST00000615808|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 ENSG00000182256|ENST00000615808|GABRG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.4584655761719 3 377.459106 1129.35549 0.33767 0.00012745 -1.9755 -0.00074566 -1.6378 -0.0006182 377.45837221511533 38.988 0.24227 38.988 38.834 39.077 0 14 10 2 0 0 0 0.61256 1 20899 20899 0.26902 0.1097 1 1000600 57948 9038 38644 39523 67634 67634 -0.20401443228251992 SFFDAEGGSHV 11 Unmodified _SFFDAEGGSHV_ 0 0 0 ENSG00000128250|ENST00000354373|RFPL1 ENSG00000128250|ENST00000354373|RFPL1 ENSG00000128250|ENST00000354373|RFPL1 MSMS AL20221201_MKP_PDAC_01 4 384.8362731933594 3 384.836727 1151.48835 NaN NaN NaN NaN NaN NaN NaN 101.37 1 95.199 94.699 95.699 -6.1757 0 0 0 0.58065 1 68012 68012 21.799 5.6504 1 57949 4051 38645 39524 67635 67635 -0.08133216184091907 SFFFAMVH 8 Unmodified _SFFFAMVH_ 0 0 0 nc|ENSG00000157214|Q8NFT2-3|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;ENSG00000157214|ENST00000394621|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.462158203125 1 985.460035 984.452759 0.26726 0.00026337 3.2503 0.003203 3.5176 0.0034664 985.4639017926854 51.591 0.21131 51.591 51.454 51.665 0 15 9 2 0 0 0 0.80143 1 28466 28466 5.7604 0.52976 1 2026200 57950 16298 38646 39525 67636 67636 -0.040089251747986054 SFFKSYRPL 9 Unmodified _SFFKSYRPL_ 0 0 0 REV__nc|ENSG00000028528|Q13596-3|SNX1 REV__nc|ENSG00000028528|Q13596-3|SNX1 MSMS AL20221201_MKP_PDAC_01 4 382.5423278808594 3 382.209836 1143.60768 NaN NaN NaN NaN NaN NaN NaN 26.557 1 23.606 23.106 24.106 -2.9511 0 0 0 0.6306 1 14649 14649 11.495 0 1 + 57951 29487 38647 39526 67637 67637 0.041620222312758415 SFFLLGLSF 9 Unmodified _SFFLLGLSF_ 0 0 0 REV__ENST00000476540.1_1_X:153669338-153670248:+|nuORF REV__ENST00000476540.1_1_X:153669338-153670248:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.7822265625 2 515.784036 1029.55352 NaN NaN NaN NaN NaN NaN NaN 59.138 1 53.064 52.564 53.564 -6.0745 0 0 0 0.080768 1 37941 37941 48.346 10.372 1 + 57952 27597 38648 39527 67638 67638 0.039924300797110845 SFFLSHQPY 9 Unmodified _SFFLSHQPY_ 0 0 0 ENST00000448264.1_1_1:225888537-225888804:+|nuORF ENST00000448264.1_1_1:225888537-225888804:+|nuORF ENST00000448264.1_1_1:225888537-225888804:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.19189453125 3 375.850308 1124.5291 -0.61666 -0.00023177 1.1933 0.00044849 0.57662 0.00021672 375.85024785471956 16.14 0.097942 16.14 16.078 16.176 0 22 18 2 0 0 0 0.21798 1 7815 7815 1.1933 0 1 497360 57953 13492 38649 39528 67639 67639 -0.028188300738065664 SFFMARVFM 9 Unmodified _SFFMARVFM_ 0 0 0 nc|ENSG00000198856|Q9NRP0-2|OSTC;ENSG00000198856|ENST00000361564|OSTC nc|ENSG00000198856|Q9NRP0-2|OSTC nc|ENSG00000198856|Q9NRP0-2|OSTC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.7637329101562 2 568.274998 1134.53544 1.3129 0.00074612 -1.7066 -0.00096982 -0.39366 -0.00022371 568.273766061963 101.16 0.15668 94.989 94.907 95.064 -6.1757 21 9 3 0 0 0 0.16785 1 67812 67812 23.148 6.0619 1 134760000 57954 10175 38650 39529 67640 67640 -0.0264435143828905 SFFMGNHITM 10 Unmodified _SFFMGNHITM_ 0 0 0 REV__ENSG00000171564|ENST00000302068|FGB REV__ENSG00000171564|ENST00000302068|FGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5125427246094 3 395.512422 1183.51544 0.57748 0.0002284 -0.1948 -7.7047E-05 0.38267 0.00015135 395.5122041683846 28.112 0.18532 28.066 27.956 28.142 -0.04641 11 6 2 0 0 0 0.57893 1 14506 14506 7.4771 0 1 5684400 + 57955 22577 38651 39530 67641 67641 -0.06898147168931246 SFFMLIFILTL 11 Unmodified _SFFMLIFILTL_ 0 0 0 REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.8848266601562 2 672.885435 1343.75632 0.095544 6.429E-05 -0.45682 -0.00030738 -0.36127 -0.00024309 672.8851060995747 68.726 0.30254 68.726 68.585 68.888 0 39 12 4 0 0 0 0.48615 2 38264 38264;38360 17.113 0 1 4514800 + 57956 26164 38652 39531 67642;67643 67642 0.09818992089958556 SFFMLIFILTL 11 Unmodified _SFFMLIFILTL_ 0 0 0 REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.8855590820312 2 672.885435 1343.75632 0.088532 5.9572E-05 -0.65494 -0.0004407 -0.56641 -0.00038113 672.8850535035189 69.177 0.32111 68.696 68.528 68.849 -0.48071 29 13 3 0 0 0 0.28407 1 37793 37793 27.629 0 1 2918500 + 57957 26164 38652 39531 67644 67644 0.09818992089958556 SFFMLIFILTL 11 Unmodified _SFFMLIFILTL_ 0 0 0 REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8850708007812 2 672.885435 1343.75632 0.96456 0.00064904 -1.4525 -0.00097735 -0.48792 -0.00032831 672.8843200895012 89.46 0.64361 83.285 82.882 83.526 -6.1757 62 35 2 0 0 0 0.014934 2 59062 58924;59062 62.573 7.07 1 16234000 + 57958 26164 38652 39531 67645;67646 67646 0.09818992089958556 SFFMLIFILTL 11 Unmodified _SFFMLIFILTL_ 0 0 0 REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 672.885435 1343.75632 0.095544 6.429E-05 -0.45682 -0.00030738 -0.36127 -0.00024309 672.8851060995747 68.726 0.30254 68.726 68.585 68.888 0 0.014929 0.00013108 NaN 27.629 39 12 4 NaN NaN NaN NaN 0 NaN NaN 0 4514800 + 57959 26164 38652 39531 0.09818992089958556 SFFMLIFILTL 11 Unmodified _SFFMLIFILTL_ 0 0 0 REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF REV__ENST00000373913.7_1_20:35155797-35155968:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 672.885435 1343.75632 0.088532 5.9572E-05 -0.65494 -0.0004407 -0.56641 -0.00038113 672.8850535035189 69.177 0.32111 68.696 68.528 68.849 -0.48071 -0.014929 -0.00013555 NaN 27.629 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2918500 + 57960 26164 38652 39531 0.09818992089958556 SFFNRVNNKF 10 Unmodified _SFFNRVNNKF_ 0 0 0 REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF REV__ENST00000481996.1_1_6:74344990-74351530:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.8880004882812 3 424.887645 1271.64111 1.0281 0.00043683 -0.78076 -0.00033173 0.24735 0.0001051 424.8874537435959 31.917 0.39389 28.222 28.051 28.445 -3.6958 33 21 2 0 0 0 0.62068 1 18185 18185 5.7834 0 1 10208000 + 57961 27712 38653 39532 67647 67647 0.016150240031720386 SFFPELYF 8 Unmodified _SFFPELYF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000561658.5_1_16:67486328-67515058:-|nuORF ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.255126953125 2 525.252569 1048.49058 NaN NaN NaN NaN NaN NaN NaN 62.057 1 62.057 61.557 62.557 0 0 0 0 0.97348 1 34604 34604 5.7604 0 1 57962 6670 38654 39533 67648 67648 -0.031721357083370094 SFFSELGSPPA 11 Unmodified _SFFSELGSPPA_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7747192382812 2 569.774396 1137.53424 0.59799 0.00034072 0.3599 0.00020506 0.95789 0.00054578 569.7743960391396 90.865 0.49815 90.371 90.139 90.637 -0.49457 112 33 4 0 0 0 0.48615 1 49585 49585 17.113 0 1 27798000 + 57963 22213 38655 39534 67649 67649 -0.029025710018458994 SFFTIEFFT 9 Unmodified _SFFTIEFFT_ 0 0 0 REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7763671875 2 569.776408 1137.53826 0.57355 0.00032679 -2.2152 -0.0012622 -1.6417 -0.00093539 569.7756447800301 90.274 0.30592 90.317 90.188 90.494 0.042175 19 10 2 0 0 0 0.095405 1 50242 50242 34.102 8.7031 1 8733100 + 57964 27662 38656 39535 67650 67650 -0.025004815081729248 SFFTIEFFT 9 Unmodified _SFFTIEFFT_ 0 0 0 REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 569.776408 1137.53826 0.59798 0.00034072 -3.1702 -0.0018063 -2.5722 -0.0014656 569.7743960391396 90.865 0.49815 90.371 90.139 90.637 -0.49457 0.027123 -0.00013642 NaN 34.102 112 33 4 NaN NaN NaN NaN 0 NaN NaN 0 27798000 + 57965 27662 38656 39535 -0.025004815081729248 SFFTIEFFT 9 Unmodified _SFFTIEFFT_ 0 0 0 REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF REV__ENST00000479733.5_1_10:71561880-71562105:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.776408 1137.53826 0.57355 0.00032679 -2.2152 -0.0012622 -1.6417 -0.00093539 569.7756447800301 90.274 0.30592 90.317 90.188 90.494 0.042175 -0.027123 0.00095184 NaN 34.102 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8733100 + 57966 27662 38656 39535 -0.025004815081729248 SFFTRYDSI 9 Unmodified _SFFTRYDSI_ 0 0 0 REV__ENSG00000277481|ENST00000620267|PKD1L3 REV__ENSG00000277481|ENST00000620267|PKD1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.274658203125 2 568.274564 1134.53457 1.7288 0.00098241 -1.3443 -0.00076392 0.38449 0.0002185 568.2736896221368 100.32 0.13642 100.28 100.21 100.35 -0.036301 12 4 3 0 0 0 0.12424 1 55741 55741 30.637 0 1 30586000 + 57967 24664 38657 39536 67651 67651 -0.0273115128200061 SFGAAHELP 9 Unmodified _SFGAAHELP_ 0 0 0 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 ENSG00000204335|ENST00000375281|SP5 MSMS AL20221201_MKP_PDAC_01 4 464.7313232421875 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 46.875 1 41.795 41.295 42.295 -5.0805 0 0 0 0.10545 1 29030 29030 42.095 7.6928 1 57968 10269 38658 39537 67652 67652 -0.02159361170708962 SFGATTPSKY 10 Unmodified _SFGATTPSKY_ 0 0 0 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 REV__nc|ENSG00000138834|Q9UPT6|MAPK8IP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.240234375 2 529.761289 1057.50803 0.53437 0.00028309 -0.48779 -0.00025841 0.046573 2.4673E-05 529.7611925439418 36.063 0.21881 36.063 36.01 36.229 0 26 10 3 0 0 0 0.22667 1 19174 19174 15.847 1.0089 1 21195000 + 57969 20377 38659 39538 67653 67653 -0.01842840173321747 SFGDKHSDS 9 Unmodified _SFGDKHSDS_ 0 0 0 REV__nc|ENSG00000184347|O75094-2|SLIT3 REV__nc|ENSG00000184347|O75094-2|SLIT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2096862792969 2 490.209421 978.404288 1.1543 0.00056584 -0.51531 -0.00025261 0.63896 0.00031323 490.2091979446994 88.368 0.43079 82.192 81.993 82.424 -6.1757 50 23 3 0 0 0 0.52067 1 58345 58345 6.2058 0.44535 1 19036000 + 57970 23414 38660 39539 67654 67654 -0.0857774728098093 SFGDVYLF 8 Unmodified _SFGDVYLF_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.451171875 1 947.450911 946.443634 0.4088 0.00038732 0.60471 0.00057293 1.0135 0.00096025 947.4515939728593 86.398 0.34413 85.895 85.745 86.089 -0.50318 25 14 2 0 0 0 0.5953 2 47234 47234;47336 26.341 6.9023 1 1146300 57971 5779 38661 39540 67655;67656 67655 -0.03172995259478739 SFGDVYLF 8 Unmodified _SFGDVYLF_ 0 0 0 ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 ENSG00000146426|ENST00000682666|TIAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 947.452392578125 1 947.450911 946.443634 0.73435 0.00069576 0.88823 0.00084155 1.6226 0.0015373 947.451247155506 94.084 0.58247 87.908 87.684 88.266 -6.1757 45 33 2 0 0 0 0.44122 2 62271 62271;62411 40.449 19.577 1 5357000 57972 5779 38661 39540 67657;67658 67657 -0.03172995259478739 SFGGFLQRCF 10 Unmodified _SFGGFLQRCF_ 0 0 0 REV__nc|ENSG00000163399|P05023-2|ATP1A1 REV__nc|ENSG00000163399|P05023-2|ATP1A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8557434082031 3 387.855176 1160.5437 1.9364 0.00075104 -0.046071 -1.7869E-05 1.8903 0.00073317 387.85511476797734 47.742 0.57547 42.508 42.165 42.74 -5.2339 79 34 4 0 0 0 0.62068 1 29671 29671 5.7834 0 1 18268000 + 57973 21760 38662 39541 67659 67659 -0.03015081197327163 SFGHKNSPTY 10 Unmodified _SFGHKNSPTY_ 0 0 0 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 MSMS AL20221201_MKP_PDAC_01 4 379.8486633300781 3 379.848967 1136.52507 NaN NaN NaN NaN NaN NaN NaN 49.687 1 44.148 43.648 44.648 -5.5391 0 0 0 0.8671 1 31068 31068 5.4027 1.8157 1 + 57974 21943 38663 39542 67660 67660 -0.03772919567518329 SFGMTQWF 8 Unmodified _SFGMTQWF_ 0 0 0 REV__ENSG00000182173|ENST00000333213|TSEN54 REV__ENSG00000182173|ENST00000333213|TSEN54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2221069335938 2 502.220746 1002.42694 NaN NaN NaN NaN NaN NaN NaN 38.242 1 38.242 37.742 38.742 0 0 0 0 0.95201 1 20411 20411 10.183 0 1 + 57975 23248 38664 39543 67661 67661 -0.07417819417071314 SFGNCDNKC 9 Unmodified _SFGNCDNKC_ 0 0 0 REV__ENST00000540844.5_1_21:30439913-30445917:-|nuORF REV__ENST00000540844.5_1_21:30439913-30445917:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2599792480469 2 494.186577 986.358601 NaN NaN NaN NaN NaN NaN NaN 58.864 1 58.864 58.364 59.364 0 0 0 0 0.82739 1 32783 32783 4.3292 1.44 1 + 57976 28588 38665 39544 67662 67662 -0.13512432059246748 SFGNDYIENL 10 Unmodified _SFGNDYIENL_ 0 0 0 nc|ENSG00000171174|Q9H477-2|RBKS;ENSG00000171174|ENST00000302188|RBKS nc|ENSG00000171174|Q9H477-2|RBKS nc|ENSG00000171174|Q9H477-2|RBKS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2661743164062 2 586.266936 1170.51932 NaN NaN NaN NaN NaN NaN NaN 26.787 1 26.787 26.287 27.287 0 0 0 0 0.97592 1 13783 13783 3.2813 0 1 57977 8073 38666 39545 67663 67663 -0.05912062869856527 SFGPPCECMY 10 Unmodified _SFGPPCECMY_ 0 0 0 REV__ENSG00000134250|ENST00000256646|NOTCH2 REV__ENSG00000134250|ENST00000256646|NOTCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.20849609375 2 567.208663 1132.40277 0.8042 0.00045615 2.0105 0.0011404 2.8147 0.0015965 567.2098653970294 67.625 0.544 61.449 61.163 61.707 -6.1757 40 30 2 0 0 0 0.69377 1 43999 43999 3.5965 0.70727 1 16645000 + 57978 19968 38667 39546 67664 67664 -0.1581316395727299 SFGSGAGSSSF 11 Unmodified _SFGSGAGSSSF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.4174194335938 1 990.416316 989.40904 0.1602 0.00015866 0.15998 0.00015845 0.32018 0.00031711 990.4169449148498 39.205 0.22531 39.205 39.096 39.321 0 18 10 2 0 0 0 0.13715 1 20958 20958 38.176 15.439 1 2366400 + 57979 165 38668 39547 67665 67665 -0.08608863138215384 SFGVGAFPFGF 11 Unmodified _SFGVGAFPFGF_ 0 0 0 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 ENSG00000204308|ENST00000375094|RNF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7730102539062 2 566.776742 1131.53893 NaN NaN NaN NaN NaN NaN NaN 55.909 1 55.84 55.34 56.34 -0.068737 0 0 0 0.47782 1 30393 30393 25.399 1.3787 1 57980 10265 38669 39548 67666 67666 -0.021576420684368713 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2439575195312 3 528.243317 1581.70812 -0.055607 -2.9374E-05 0.50158 0.00026496 0.44597 0.00023558 528.2435428358152 70.078 0.73306 69.599 69.086 69.819 -0.47903 158 36 6 0 0 0 0.73992 3 38420 38204;38307;38420 0.50596 0.50596 1 459750000 + 57981 16716 38670 39549 67667;67668;67669 67669 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.578369140625 3 528.243317 1581.70812 0.18476 9.7601E-05 0.19963 0.00010545 0.3844 0.00020305 528.2433833857166 70.583 0.44978 70.105 69.798 70.248 -0.47736 171 37 5 0 0 0 0.74046 2 38518 38518;38628 0.45452 0.35968 1 488850000 + 57982 16716 38670 39549 67670;67671 67670 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.57861328125 3 528.243317 1581.70812 0.30542 0.00016133 0.49269 0.00026026 0.79811 0.0004216 528.2435141896889 70.808 0.89432 70.331 70.225 71.12 -0.47735 144 39 5 0 0 0 0.73992 1 38938 38938 0.50596 0.09769 1 356150000 + 57983 16716 38670 39549 67672 67672 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.244384765625 3 528.243317 1581.70812 0.45837 0.00024213 1.4316 0.00075622 1.8899 0.00099835 528.2438368003639 71.749 0.61292 71.273 71.073 71.686 -0.47609 59 24 3 0 0 0 0.73992 1 39329 39329 0.50596 0.051438 1 1819600 + 57984 16716 38670 39549 67673 67673 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.578369140625 3 528.243317 1581.70812 0.18476 9.7601E-05 0.19963 0.00010545 0.3844 0.00020305 528.2433833857166 70.583 0.44978 70.105 69.798 70.248 -0.47736 171 37 5 0 0 0 0.306 1 38518 38518 0.45452 0.35968 1 488850000 + 57985 16716 38670 39549 67674 67674 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.243896484375 3 528.243317 1581.70812 0.36081 0.0001906 0.67963 0.00035901 1.0404 0.00054961 528.2436217181249 69.523 0.47074 69.553 69.314 69.784 0.030914 106 26 5 0 0 0 0.74046 2 38115 38115;38322 0.45452 0.35968 1 381140000 + 57986 16716 38670 39549 67675;67676 67675 -0.05946365505747053 SFGWRYYFYFF 11 Unmodified _SFGWRYYFYFF_ 0 0 0 REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense REV__AluSp_dup48944|chr21:8406155-8406395:-|1.3002011575773198|0.3319044745033751|1.97|130.0|12|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.5778198242188 3 528.243317 1581.70812 0.59797 0.00031587 0.94191 0.00049756 1.5399 0.00081343 528.24375541158 70.313 1.3149 70.349 70.193 71.508 0.035515 188 60 6 0 0 0 0.73114 2 38978 38772;38978 1.3296 0 1 326180000 + 57987 16716 38670 39549 67677;67678 67678 -0.05946365505747053 SFGYIHAI 8 Unmodified _SFGYIHAI_ 0 0 0 ENSG00000081014|ENST00000261842|AP4E1;nc|ENSG00000081014|Q9UPM8-2|AP4E1 ENSG00000081014|ENST00000261842|AP4E1 ENSG00000081014|ENST00000261842|AP4E1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2377319335938 2 454.237253 906.459953 NaN NaN NaN NaN NaN NaN NaN 14.701 1 14.707 14.207 15.207 0.0057774 0 0 0 0.97444 1 7300 7300 0.79363 0 1 57988 1312 38671 39550 67679 67679 0.002981306972856146 SFHDFVHRI 9 Unmodified _SFHDFVHRI_ 0 0 0 REV__ENSG00000163154|ENST00000368910|TNFAIP8L2 REV__ENSG00000163154|ENST00000368910|TNFAIP8L2 MSMS AL20221201_MKP_PDAC_01 4 579.2999267578125 2 579.296165 1156.57778 NaN NaN NaN NaN NaN NaN NaN 80.436 1 74.26 73.76 74.76 -6.1757 0 0 0 0.53226 1 52773 52773 14.838 1.3304 1 + 57989 21731 38672 39551 67680 67680 0.00575083285934852 SFHFGGTDGF 10 Unmodified _SFHFGGTDGF_ 0 0 0 REV__ENSG00000204308|ENST00000375094|RNF5 REV__ENSG00000204308|ENST00000375094|RNF5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.76025390625 2 536.230156 1070.44576 0.02496 1.3384E-05 -0.23981 -0.00012859 -0.21485 -0.00011521 536.230381405605 41.953 0.16675 41.953 41.864 42.03 0 13 8 2 0 0 0 0.23227 1 22693 22693 10.824 1.4765 1 3144700 + 57990 24157 38673 39552 67681 67681 -0.08664566521633787 SFHHQLPYP 9 Unmodified _SFHHQLPYP_ 0 0 0 ENST00000447869.5_1_11:8496459-8496576:-|nuORF ENST00000447869.5_1_11:8496459-8496576:-|nuORF ENST00000447869.5_1_11:8496459-8496576:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1872253417969 3 375.854053 1124.54033 1.1581 0.00043529 -1.029 -0.00038676 0.12911 4.8526E-05 376.1872034652826 18.201 0.088442 15.579 15.515 15.604 -2.6215 12 9 2 0 0 0 0.58466 1 9544 9544 2.9952 1.8019 1 875290 57991 13487 38674 39553 67682 67682 -0.01696007979649039 SFHKESGRF 9 Unmodified _SFHKESGRF_ 0 0 0 nc|ENSG00000136279|Q9UJU6-5|DBNL;nc|ENSG00000136279|Q9UJU6-4|DBNL;ENSG00000136279|ENST00000448521|DBNL;nc|ENSG00000136279|Q9UJU6-2|DBNL;nc|ENSG00000136279|Q9UJU6-3|DBNL;ENST00000458579.5_1_7:44091436-44097592:+|nuORF nc|ENSG00000136279|Q9UJU6-5|DBNL nc|ENSG00000136279|Q9UJU6-5|DBNL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2672119140625 2 547.772522 1093.53049 -0.17239 -9.4433E-05 -0.31201 -0.00017091 -0.4844 -0.00026534 547.7724213466531 24.632 0.37414 24.632 24.469 24.844 0 52 20 4 0 0 0 0.58466 1 12523 12523 2.3027 0 1 8413100 57992 4812 38675 39554 67683 67683 -0.012531959850548446 SFHKPFFF 8 Unmodified _SFHKPFFF_ 0 0 0 REV__ENST00000292114.7_1_17:26689143-26689299:+|nuORF REV__ENST00000292114.7_1_17:26689143-26689299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8473205566406 3 352.848239 1055.52289 -0.099414 -3.5078E-05 -3.5247 -0.0012437 -3.6241 -0.0012788 352.84695291088576 29.577 0.18586 29.607 29.507 29.693 0.030106 13 8 2 0 0 0 0.6895 1 15437 15437 13.906 3.1065 1 5176800 + 57993 25242 38676 39555 67684 67684 -0.0026530351467499713 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.8453063964844 3 372.845557 1115.51484 -0.55508 -0.00020696 0.027671 1.0317E-05 -0.5274 -0.00019664 372.8456528772357 28.803 0.19923 28.803 28.704 28.903 0 28 9 4 0 0 0 0.21643 1 14891 14891 15.739 13.003 1 6612800 57994 6327 38677 39556 67685 67685 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8458251953125 3 372.845557 1115.51484 0.58508 0.00021814 -0.20138 -7.5082E-05 0.38371 0.00014306 372.84545361512744 28.744 0.3278 28.681 28.528 28.856 -0.062159 43 13 5 0 0 0 0.13231 2 14809 14809;14915 28.234 19.923 1 107650000 57995 6327 38677 39556 67686;67687 67686 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7650756835938 2 558.764697 1115.51484 0.78638 0.0004394 -0.37533 -0.00020972 0.41105 0.00022968 558.7644830400991 28.719 0.30797 28.657 28.502 28.81 -0.062159 32 12 4 0 0 0 0.0048194 1 14811 14811 117.76 77.803 1 31051000 57996 6327 38677 39556 67688 67688 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8457336425781 3 372.845557 1115.51484 0.10465 3.902E-05 0.39467 0.00014715 0.49933 0.00018617 372.8456878739597 28.56 0.26216 28.589 28.444 28.706 0.029564 27 9 4 0 0 0 0.07087 1 14859 14859 37.075 29.598 1 14029000 57997 6327 38677 39556 67689 67689 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7648315429688 2 558.764697 1115.51484 0.47649 0.00026625 0.41959 0.00023445 0.89608 0.0005007 558.764925229481 28.578 0.18344 28.607 28.467 28.651 0.029564 14 6 3 0 0 0 0.0081887 1 14879 14879 93.166 58.764 1 2309700 57998 6327 38677 39556 67690 67690 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.846923828125 3 372.845557 1115.51484 1.4557 0.00054275 -0.52044 -0.00019404 0.93527 0.00034871 372.8453436487862 32.085 0.51586 28.389 28.122 28.638 -3.6958 101 29 4 0 0 0 0.021948 3 18108 18108;18225;18355 49.742 34.493 1 515400000 57999 6327 38677 39556 67691;67692;67693 67691 -0.038294825021012 SFHNIHNTF 9 Unmodified _SFHNIHNTF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7657470703125 2 558.764697 1115.51484 1.0571 0.00059065 -0.46722 -0.00026107 0.58984 0.00032958 558.7644534605569 32.078 0.47005 28.382 28.138 28.608 -3.6958 79 26 4 0 0 0 0.0040067 3 18130 18130;18250;18385 121.35 77.573 1 168400000 58000 6327 38677 39556 67694;67695;67696 67694 -0.038294825021012 SFHNWYSF 8 Unmodified _SFHNWYSF_ 0 0 0 ENSG00000155890|ENST00000286349|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.161865234375 3 363.159253 1086.45593 1.8048 0.00065543 3.3046 0.0012001 5.1094 0.0018555 363.4944742760955 37.788 0.31173 33.419 33.286 33.597 -4.3689 26 18 2 0 0 0 0.80143 1 22237 22237 3.9444 0 1 5370100 58001 6414 38678 39557 67697 67697 -0.08383958796434854 SFHQYKRFN 9 Unmodified _SFHQYKRFN_ 0 0 0 REV__ENSG00000197584|ENST00000452583|KCNMB2 REV__ENSG00000197584|ENST00000452583|KCNMB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5413513183594 3 409.540357 1225.59924 NaN NaN NaN NaN NaN NaN NaN 17.822 1 17.835 17.335 18.335 0.013865 0 0 0 0.85737 1 8892 8892 0.26902 0 1 + 58002 16808 38679 39558 67698 67698 -0.004535316853207405 SFHSKKKDLL 10 Unmodified _SFHSKKKDLL_ 0 0 0 REV__ENST00000225388.8_1_17:27585167-27585341:-|nuORF REV__ENST00000225388.8_1_17:27585167-27585341:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5687866210938 3 401.567912 1201.68191 1.2496 0.00050178 0.033769 1.3561E-05 1.2833 0.00051534 401.56794880307217 50.253 0.39848 44.714 44.531 44.929 -5.5391 66 25 3 0 0 0 0.29752 1 31408 31408 18.721 0.85806 1 38025000 + 58003 24777 38680 39559 67699 67699 0.0891336532281457 SFHTSVHH 8 Unmodified _SFHTSVHH_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.R223Gfs*27|1|0.56|ENSG00000172493|chr4:87047220-87047220|C/-|frameshift_variant;ENST00000504956.5_1_4:87856214-87968836:+|nuORF nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2255859375 2 476.225208 950.435863 0.92976 0.00044278 -0.058337 -2.7781E-05 0.87143 0.000415 476.2253019135649 32.114 0.3876 28.418 28.19 28.578 -3.6958 39 21 2 0 0 0 0.46494 1 18298 18298 38.151 2.107 1 32290000 58004 8226 38681 39560 67700 67700 -0.04133709736379387 SFHTSVHH 8 Unmodified _SFHTSVHH_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;AFF1|p.R223Gfs*27|1|0.56|ENSG00000172493|chr4:87047220-87047220|C/-|frameshift_variant;ENST00000504956.5_1_4:87856214-87968836:+|nuORF nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 476.225208 950.435863 0.70393 0.00033523 -0.61047 -0.00029072 0.093461 4.4508E-05 476.22483049662935 28.743 0.23168 28.681 28.554 28.786 -0.062159 0.12048 -0.00051524 NaN 38.151 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 7297700 58005 8226 38681 39560 -0.04133709736379387 SFIDEWMY 8 Unmodified _SFIDEWMY_ 0 0 0 REV__ENST00000439871.1_1_2:218925948-218930359:-|nuORF REV__ENST00000439871.1_1_2:218925948-218930359:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.158203125 3 364.156521 1089.44773 NaN NaN NaN NaN NaN NaN NaN 79.999 1 79.999 79.499 80.499 0 0 0 0 0.97444 1 44425 44425 1.8442 0.6509 1 + 58006 27068 38682 39561 67701 67701 -0.0934127382809038 SFIDKNNDLLF 11 Unmodified _SFIDKNNDLLF_ 0 0 0 ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A ENSG00000166866|ENST00000300119|MYO1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.3395385742188 2 663.340435 1324.66632 0.74365 0.00049329 -0.83345 -0.00055286 -0.089801 -5.9569E-05 663.339752041348 74.837 0.19413 74.361 74.281 74.475 -0.47588 12 7 2 0 0 0 0.59689 1 40981 40981 11.495 0 1 743040 58007 7542 38683 39562 67702 67702 0.016970340150919583 SFIEKFTDF 9 Unmodified _SFIEKFTDF_ 0 0 0 ENST00000557256.2_1_14:21190051-21190312:-|nuORF ENST00000557256.2_1_14:21190051-21190312:-|nuORF ENST00000557256.2_1_14:21190051-21190312:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2786865234375 2 567.279315 1132.54408 0.81076 0.00045992 0.76384 0.00043331 1.5746 0.00089324 567.2786761211421 58.245 0.78607 52.218 51.736 52.522 -6.0275 113 43 4 0 0 0 0.040337 1 37236 37236 61.602 3.8799 1 258330000 58008 15255 38684 39563 67703 67703 -0.01689382996482891 SFIGPVYFV 9 Unmodified _SFIGPVYFV_ 0 0 0 REV__ENSG00000183313|ENST00000332249|OR52L1 REV__ENSG00000183313|ENST00000332249|OR52L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7784423828125 2 514.776211 1027.53787 2.8225 0.001453 -0.54588 -0.000281 2.2766 0.001172 514.7762315332145 97.024 0.30241 97.017 96.799 97.101 -0.0070114 22 11 3 0 0 0 0.2143 1 53839 53839 21.747 3.6117 1 8074300 + 58009 23335 38685 39564 67704 67704 0.02520143562674093 SFIISARDDND 11 Unmodified _SFIISARDDND_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.794189453125 2 626.793849 1251.57314 0.88785 0.0005565 -0.24365 -0.00015272 0.6442 0.00040378 626.7939218442655 89.763 0.80634 83.587 83.201 84.008 -6.1757 96 44 3 0 0 0 0.65108 1 59488 59488 8.7454 0 1 23397000 58010 7163 38686 39565 67705 67705 -0.04257890438157119 SFINSNLKF 9 Unmodified _SFINSNLKF_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.287353515625 2 535.287474 1068.5604 0.31343 0.00016777 0.16592 8.8814E-05 0.47935 0.00025659 535.2872851832312 62.642 0.32417 62.621 62.467 62.791 -0.021614 37 16 3 0 0 0 0.020973 1 34202 34202 62.573 22.623 1 18970000 58011 1373 38687 39566 67706 67706 0.028857429602794582 SFIPQFVRL 9 Unmodified _SFIPQFVRL_ 0 0 0 ENST00000309050.9_2_12:110480181-110496907:-|nuORF ENST00000309050.9_2_12:110480181-110496907:-|nuORF ENST00000309050.9_2_12:110480181-110496907:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5504150390625 3 369.550082 1105.62842 -0.37371 -0.0001381 0.20145 7.4446E-05 -0.17226 -6.3659E-05 369.55009402815074 53.596 0.94033 53.532 53.402 54.342 -0.063419 139 53 4 0 0 0 0.59218 1 29470 29470 0.96228 0 1 556720000 58012 11659 38688 39567 67707 67707 0.07982612610953765 SFIRSSHLI 9 Unmodified _SFIRSSHLI_ 0 0 0 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 MSMS AL20221201_MKP_PDAC_01 4 353.8702392578125 3 353.869703 1058.58728 NaN NaN NaN NaN NaN NaN NaN 45.791 1 40.836 40.336 41.336 -4.9549 0 0 0 0.54558 1 28175 28175 14.405 0 1 58013 2070 38689 39568 67708 67708 0.06032851571490028 SFIRYSFI 8 Unmodified _SFIRYSFI_ 0 0 0 REV__nc|ENSG00000250120|Q9Y5I2-3|PCDHA10 REV__nc|ENSG00000250120|Q9Y5I2-3|PCDHA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7808227539062 2 516.779285 1031.54402 1.2519 0.00064698 -0.22317 -0.00011533 1.0288 0.00053164 516.7795144693567 95.443 1.2145 89.268 88.73 89.944 -6.1757 150 71 3 0 0 0 0.57045 1 63572 63572 28.487 3.0875 1 42469000 + 58014 29977 38690 39569 67709 67709 0.029506617941933655 SFISATCLLL 10 Unmodified _SFISATCLLL_ 0 0 0 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2941284179688 2 534.293911 1066.57327 0.31767 0.00016973 -0.12705 -6.7883E-05 0.19061 0.00010184 534.293918476571 58.934 0.39613 58.934 58.699 59.095 0 66 17 5 0 0 0 0.44373 1 32851 32851 19.257 1.1106 1 37848000 58015 9597 38691 39570 67710 67710 0.04264438028144468 SFISVGNKF 9 Unmodified _SFISVGNKF_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7684936523438 2 499.768917 997.523281 -0.21649 -0.00010819 0.12774 6.3839E-05 -0.088753 -4.4356E-05 499.76886958001944 53.798 0.21476 53.731 53.648 53.863 -0.066936 20 12 2 0 0 0 0.0090948 1 29206 29206 85.272 23.915 1 4286500 58016 9845 38692 39571 67711 67711 0.024420714145321654 SFITHSLKF 9 Unmodified _SFITHSLKF_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5341186523438 3 360.53432 1078.58113 -0.22715 -8.1894E-05 0.79891 0.00028803 0.57176 0.00020614 360.5345381383027 51.263 0.31379 51.21 51.047 51.361 -0.053871 39 15 4 0 0 0 0.078314 1 27703 27703 35.612 16.25 1 10838000 58017 1983 38693 39572 67712 67712 0.04498333339961391 SFITHSLKF 9 Unmodified _SFITHSLKF_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000540847.6_1_18:13088862-13124766:+|nuORF;ENST00000513432.5_1_18:13059017-13124766:+|nuORF;ENST00000510237.5_1_18:13103579-13124766:+|nuORF ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2979736328125 2 540.297842 1078.58113 0.63811 0.00034477 1.0688 0.00057745 1.7069 0.00092223 540.2979783057505 80.382 0.23168 74.206 74.085 74.316 -6.1757 19 12 2 0 0 0 0.0039711 1 52717 52717 121.53 77.676 1 11720000 58018 1983 38693 39572 67713 67713 0.04498333339961391 SFITSSWTF 9 Unmodified _SFITSSWTF_ 0 0 0 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2581176757812 2 538.258382 1074.50221 0.34213 0.00018416 -0.49103 -0.0002643 -0.14889 -8.0144E-05 538.2578628395798 89.529 0.27009 89.577 89.432 89.702 0.047852 13 9 2 0 0 0 0.06187 1 49831 49831 42.095 16.695 1 7296300 58019 3205 38694 39573 67714 67714 -0.03205938685005094 SFIYSYMSCF 10 Unmodified _SFIYSYMSCF_ 0 0 0 ENST00000476499.1_1_10:24918849-25010828:-|nuORF ENST00000476499.1_1_10:24918849-25010828:-|nuORF ENST00000476499.1_1_10:24918849-25010828:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.5111389160156 3 416.508566 1246.50387 0.19553 8.144E-05 3.9623 0.0016503 4.1578 0.0017318 416.5098285370947 39.113 0.54017 39.113 38.929 39.469 0 52 25 4 0 0 0 0.67046 1 20918 20918 6.1918 0.78914 1 8183300 58020 13985 38695 39574 67715 67715 -0.1095238898290063 SFKCSYVV 8 Unmodified _SFKCSYVV_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MSMS AL20221201_MKP_PDAC_01 4 466.7335510253906 2 466.730946 931.447339 NaN NaN NaN NaN NaN NaN NaN 21.615 1 18.88 18.38 19.38 -2.7348 0 0 0 0.97444 1 11592 11592 5.2307 0.47466 1 58021 2369 38696 39575 67716 67716 -0.02112648757270108 SFKDAATEKF 10 Unmodified _SFKDAATEKF_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2883911132812 2 572.287671 1142.56079 0.47775 0.00027341 0.79962 0.00045761 1.2774 0.00073102 572.2878661376405 37.125 0.32186 37.125 36.916 37.238 0 23 15 2 0 0 0 0.44373 1 19747 19747 19.257 0 1 2189200 58022 1363 38697 39576 67717 67717 -0.004788821105421448 SFKDENHEF 9 Unmodified _SFKDENHEF_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8356628417969 3 384.836727 1151.48835 -0.38678 -0.00014885 0.3098 0.00011922 -0.076979 -2.9624E-05 384.8366351453861 24.09 0.21851 24.09 23.955 24.174 0 28 10 4 0 0 0 0.25681 1 12275 12275 23.79 17.067 1 3358400 58023 6889 38698 39577 67718 67718 -0.08133216184091907 SFKDVDHLF 9 Unmodified _SFKDVDHLF_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8535766601562 3 369.85383 1106.53966 0.33221 0.00012287 -0.42193 -0.00015605 -0.089715 -3.3181E-05 369.85381375680475 53.397 0.21769 53.397 53.244 53.462 0 16 9 2 0 0 0 0.55775 1 29599 29599 2.2828 0.19677 1 2215200 58024 3290;3289 38699 39578 67719 67719 -0.009348474193984657 SFKDVDHLF 9 Unmodified _SFKDVDHLF_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1;ENST00000394662.2_1_1:89887573-89889825:+|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8538513183594 3 369.85383 1106.53966 0.38628 0.00014287 0.1874 6.9309E-05 0.57367 0.00021218 369.8538420511364 53.88 0.2006 53.414 53.306 53.507 -0.46664 19 9 3 0 0 0 0.25681 1 29191 29191 13.615 6.9845 1 2270300 58025 3290;3289 38699 39578 67720 67720 -0.009348474193984657 SFKFVSMRHLH 11 Unmodified _SFKFVSMRHLH_ 0 0 0 REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.9144897460938 3 463.580046 1387.71831 0.27167 0.00012594 -0.52343 -0.00024265 -0.25176 -0.00011671 463.5798215114813 40.264 0.2324 39.967 39.862 40.094 -0.29716 27 10 3 0 0 0 0.71341 1 21276 21276 1.2148 0 1 2351700 + 58026 25365 38700 39579 67721 67721 0.03995918947862265 SFKGIGSLIDF 11 Unmodified _SFKGIGSLIDF_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.547607421875 3 395.216768 1182.62847 0.39352 0.00015553 0.12459 4.9239E-05 0.51811 0.00020477 395.2172539877185 50.823 0.69662 50.769 50.53 51.226 -0.053871 86 34 4 0 0 0 0.56638 1 27400 27400 7.0371 0 1 30298000 + 58027 17230 38701 39580 67722 67722 0.04446567820264136 SFKHQYDPAY 10 Unmodified _SFKHQYDPAY_ 0 0 0 REV__ENSG00000185924|ENST00000331238|RTN4RL1 REV__ENSG00000185924|ENST00000331238|RTN4RL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.288330078125 2 628.290745 1254.56694 NaN NaN NaN NaN NaN NaN NaN 57.928 1 57.928 57.428 58.428 0 0 0 0 0.97302 1 32243 32243 3.5965 1.2938 1 + 58028 23535 38702 39581 67723 67723 -0.05016363879008168 SFKIVYVE 8 Unmodified _SFKIVYVE_ 0 0 0 ENSG00000092295|ENST00000206765|TGM1;TGM1|p.G511D|1|0.07|ENSG00000092295|chr14:24255477-24255477|C/T|missense_variant;nc|ENSG00000092295|P22735-2|TGM1 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 984.5380249023438 1 984.54006 983.532783 0.55495 0.00054637 0.81095 0.00079841 1.3659 0.0013448 984.5401194107656 77.883 0.21935 77.936 77.843 78.063 0.052444 12 8 2 0 0 0 0.48669 1 43034 43034 36.044 11.37 1 3896800 58029 1613 38703 39582 67724 67724 0.04035839700043198 SFKQRSDLF 9 Unmodified _SFKQRSDLF_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5338745117188 3 376.532979 1126.57711 1.0779 0.00040586 -0.3477 -0.00013092 0.73019 0.00027494 376.532836006168 38.45 0.40967 34.081 33.836 34.246 -4.3689 62 25 4 0 0 0 0.38785 1 22563 22563 8.9762 0 1 47325000 58030 6767 38704 39583 67725 67725 0.01888243846201476 SFKQRSDLF 9 Unmodified _SFKQRSDLF_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.295654296875 2 564.29583 1126.57711 0.73544 0.000415 0.149 8.4082E-05 0.88444 0.00049909 564.2960164364895 38.462 0.31554 34.093 33.9 34.215 -4.3689 42 19 3 0 0 0 0.013609 1 22600 22600 70.332 32.358 1 17568000 58031 6767 38704 39583 67726 67726 0.01888243846201476 SFKQRSDLF 9 Unmodified _SFKQRSDLF_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 564.29583 1126.57711 -0.38678 -0.00021826 -0.56445 -0.00031852 -0.95123 -0.00053678 564.2953603887709 34.506 0.098274 34.506 34.442 34.54 0 0.1339 -0.0004315 NaN 70.332 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 605170 58032 6767 38704 39583 0.01888243846201476 SFKQRSDLF 9 Unmodified _SFKQRSDLF_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 564.29583 1126.57711 -0.10452 -5.8983E-05 -1.5296 -0.00086315 -1.6341 -0.00092213 564.2946263556069 34.648 0.18986 34.457 34.351 34.541 -0.19132 0.084561 -0.0015208 NaN 70.332 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 5607700 58033 6767 38704 39583 0.01888243846201476 SFKQRSDLF 9 Unmodified _SFKQRSDLF_ 0 0 0 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 ENSG00000160908|ENST00000337673|ZNF394 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.29583 1126.57711 0.47851 0.00027002 -1.1045 -0.00062325 -0.62596 -0.00035323 564.2951764366891 34.406 0.17142 34.434 34.307 34.478 0.027401 0.061059 -0.001041 NaN 70.332 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1335200 58034 6767 38704 39583 0.01888243846201476 SFKRGDVIYI 10 Unmodified _SFKRGDVIYI_ 0 0 0 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 ENSG00000005020|ENST00000345317|SKAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8932189941406 3 399.892396 1196.65536 1.6609 0.00066417 0.56279 0.00022505 2.2237 0.00088923 399.89250439973546 47.56 0.41109 42.326 42.104 42.515 -5.2339 41 23 2 0 0 0 0.40136 1 29499 29499 18.721 8.5707 1 14597000 58035 294 38705 39584 67727 67727 0.06489676431465341 SFKVNTHLF 9 Unmodified _SFKVNTHLF_ 0 0 0 nc|ENSG00000063587|Q9NSD4-2|ZNF275;ENSG00000063587|ENST00000650114|ZNF275 nc|ENSG00000063587|Q9NSD4-2|ZNF275 nc|ENSG00000063587|Q9NSD4-2|ZNF275 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.8659362792969 3 364.86607 1091.57638 NaN NaN NaN NaN NaN NaN NaN 50.841 1 50.787 50.287 51.287 -0.053871 0 0 0 0.20153 1 27503 27503 22.658 9.0432 1 58036 863 38706 39585 67728 67728 0.03425449197175112 SFLAQYFF 8 Unmodified _SFLAQYFF_ 0 0 0 REV__ENST00000370982.3_1_1:68168536-68168722:-|nuORF REV__ENST00000370982.3_1_1:68168536-68168722:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.226318359375 2 511.752736 1021.49092 0.45346 0.00023206 -0.86916 -0.00044479 -0.4157 -0.00021273 511.7525649661237 75.686 0.39631 75.209 75.041 75.437 -0.47714 31 17 2 0 0 0 8.7369 1 41536 41536 2.8892 0 1 1137000 + 58037 26072 38707 39586 67729 67729 -0.01896715988482356 SFLCSIYR 8 Unmodified _SFLCSIYR_ 0 0 0 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 REV__nc|ENSG00000121577|Q9HBU9-2|POPDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7470092773438 2 494.74967 987.484787 -0.4912 -0.00024302 1.9824 0.0009808 1.4912 0.00073777 494.75126363633643 33.879 0.3175 33.879 33.747 34.065 0 30 15 3 0 0 0 0.70294 1 17796 17796 16.942 4.4107 1 5149600 + 58038 19297 38708 39587 67730 67730 -0.009455574916501064 SFLCSSTFGE 10 Unmodified _SFLCSSTFGE_ 0 0 0 ENST00000432807.1_3_9:136891234-136891624:+|nuORF ENST00000432807.1_3_9:136891234-136891624:+|nuORF ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.8239440917969 3 359.82343 1076.44846 0.033211 1.195E-05 0.67161 0.00024166 0.70482 0.00025361 359.8236780680768 64.547 0.42047 64.547 64.345 64.765 0 67 20 4 0 0 0 0.46514 1 35940 35940 11.518 0 1 23541000 58039 13281 38709 39588 67731 67731 -0.0867047917902255 SFLCSSTFGE 10 Unmodified _SFLCSSTFGE_ 0 0 0 ENST00000432807.1_3_9:136891234-136891624:+|nuORF ENST00000432807.1_3_9:136891234-136891624:+|nuORF ENST00000432807.1_3_9:136891234-136891624:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.8237915039062 3 359.82343 1076.44846 0.2787 0.00010028 0.73503 0.00026448 1.0137 0.00036476 359.82364840947815 65.175 0.34369 64.691 64.491 64.835 -0.48428 38 15 3 0 0 0 0.54684 1 35528 35528 21.59 9.3495 1 6342800 58040 13281 38709 39588 67732 67732 -0.0867047917902255 SFLDYIYEL 9 Unmodified _SFLDYIYEL_ 0 0 0 REV__nc|ENSG00000085982|Q9NVE5|USP40 REV__nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7877807617188 2 581.786973 1161.55939 0.80817 0.00047018 -0.691 -0.00040201 0.11717 6.8168E-05 581.7864566773982 60.838 0.21289 60.794 60.653 60.866 -0.04351 17 10 2 0 0 0 0.32871 1 33209 33209 15.847 1.2655 1 3615500 + 58041 17759 38710 39589 67733 67733 -0.014925161992778158 SFLEGSSSYL 10 Unmodified _SFLEGSSSYL_ 0 0 0 ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE MSMS AL20221201_MKP_PDAC_01 4 363.8411560058594 3 363.841478 1088.50261 NaN NaN NaN NaN NaN NaN NaN 46.791 1 41.711 41.211 42.211 -5.0805 0 0 0 0.85122 1 28967 28967 5.7834 0.48655 1 58042 8822 38711 39590 67734 67734 -0.03810563755791918 SFLESFQGF 9 Unmodified _SFLESFQGF_ 0 0 0 nc|ENSG00000263715|P34998-3|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;nc|ENSG00000263715|P34998-5|CRHR1 nc|ENSG00000263715|P34998-3|CRHR1 nc|ENSG00000263715|P34998-3|CRHR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2530517578125 2 531.250557 1060.48656 0.24554 0.00013044 -0.25089 -0.00013328 -0.0053493 -2.8418E-06 531.2509857429775 65.178 0.453 64.694 64.382 64.835 -0.48428 31 20 2 0 0 0 0.16226 1 35523 35523 26.884 2.2098 1 7638400 58043 3496 38712 39591 67735 67735 -0.04126225202048772 SFLESFQGF 9 Unmodified _SFLESFQGF_ 0 0 0 nc|ENSG00000263715|P34998-3|CRHR1;ENSG00000120088|ENST00000314537|CRHR1;nc|ENSG00000263715|P34998-1|CRHR1;nc|ENSG00000263715|P34998-5|CRHR1 nc|ENSG00000263715|P34998-3|CRHR1 nc|ENSG00000263715|P34998-3|CRHR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 531.250557 1060.48656 0.71191 0.0003782 -2.2854 -0.0012141 -1.5735 -0.00083591 531.249699934854 64.687 0.14034 64.687 64.578 64.718 7.6294E-06 0.039888 0.00011178 NaN 26.884 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1011500 58044 3496 38712 39591 -0.04126225202048772 SFLESNYFT 9 Unmodified _SFLESNYFT_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.2535400390625 2 554.253297 1106.49204 1.6956 0.00093978 -0.099389 -5.5087E-05 1.5962 0.00088469 554.2525992335625 82.156 0.3142 82.218 82.033 82.347 0.061996 29 12 3 0 0 0 0.30562 1 45412 45412 16.942 0 1 9020000 58045 4537 38713 39592 67736 67736 -0.05694546410222756 SFLFFTILF 9 Unmodified _SFLFFTILF_ 0 0 0 REV__ENSG00000131482|ENST00000253801|G6PC1 REV__ENSG00000131482|ENST00000253801|G6PC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.787353515625 2 567.815336 1133.61612 0.27617 0.00015681 1.7724 0.0010064 2.0486 0.0011632 567.816220584886 37.824 0.24525 37.824 37.68 37.925 0 24 11 3 0 0 0 0.21367 1 20097 20097 2.0598 0 1 2548100 + 58046 19797 38714 39593 67737 67737 0.05465576147912543 SFLFHSALLHF 11 Unmodified _SFLFHSALLHF_ 0 0 0 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2369079589844 3 440.236274 1317.68699 1.3903 0.00061205 0.23927 0.00010533 1.6296 0.00071739 440.23633810371774 82.553 0.21664 82.615 82.5 82.717 0.061996 20 7 3 0 0 0 0.17129 1 45686 45686 34.222 23.323 1 3412900 58047 8744 38715 39594 67738 67738 0.040856691854060045 SFLFWTTSF 9 Unmodified _SFLFWTTSF_ 0 0 0 REV__nc|ENSG00000167861|Q8IV36-3|HID1 REV__nc|ENSG00000167861|Q8IV36-3|HID1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.303466796875 2 568.276575 1134.5386 0.40444 0.00022983 0.32171 0.00018282 0.72615 0.00041265 568.7787143997674 69.339 0.11348 69.339 69.286 69.4 0 5 4 2 0 0 0 0.21367 1 38655 38655 4.756 0 1 402600 + 58048 22257 38716 39595 67739 67739 -0.02329061788304898 SFLGEIEELR 10 Unmodified _SFLGEIEELR_ 0 0 0 ENSG00000153914|ENST00000334121|SREK1;ENST00000523851.1_1_5:65440204-65449482:+|nuORF;ENST00000520058.1_1_5:65440204-65449453:+|nuORF ENSG00000153914|ENST00000334121|SREK1 ENSG00000153914|ENST00000334121|SREK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8148803710938 2 596.814053 1191.61355 0.14613 8.721E-05 0.52953 0.00031603 0.67566 0.00040324 596.8146236601285 56.865 0.25157 56.865 56.746 56.998 0 26 10 3 0 0 0 0.13297 1 31622 31622 41.956 5.4494 1 8347400 58049 6280 38717 39596 67740 67740 0.025410759522856097 SFLGLKFVR 9 Unmodified _SFLGLKFVR_ 0 0 0 REV__nc|ENSG00000177076|Q5QJU3-2|ACER2 REV__nc|ENSG00000177076|Q5QJU3-2|ACER2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2191772460938 3 356.218443 1065.6335 NaN NaN NaN NaN NaN NaN NaN 52.494 1 52.435 51.935 52.935 -0.058918 0 0 0 0.82579 1 28441 28441 4.5289 0 1 + 58050 22960 38718 39597 67741 67741 0.10330916473549223 SFLGRSKEAL 10 Unmodified _SFLGRSKEAL_ 0 0 0 REV__nc|ENSG00000132485|O95218-2|ZRANB2 REV__nc|ENSG00000132485|O95218-2|ZRANB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8779296875 3 369.876746 1106.60841 0.83398 0.00030847 -0.60889 -0.00022522 0.22508 8.3253E-05 369.87684038280145 24.17 0.3101 21.342 21.159 21.469 -2.8273 34 16 3 0 0 0 0.42143 1 13122 13122 13.519 0 1 7307000 + 58051 19857 38719 39598 67742 67742 0.059368168803075605 SFLGRSKEAL 10 Unmodified _SFLGRSKEAL_ 0 0 0 REV__nc|ENSG00000132485|O95218-2|ZRANB2 REV__nc|ENSG00000132485|O95218-2|ZRANB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.876746 1106.60841 -0.40097 -0.00014831 0.010677 3.9492E-06 -0.39029 -0.00014436 369.8766968836339 21.245 0.15528 21.245 21.189 21.345 0 -0.048393 0.00014781 NaN 13.519 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 1581200 + 58052 19857 38719 39598 0.059368168803075605 SFLGRSKEAL 10 Unmodified _SFLGRSKEAL_ 0 0 0 REV__nc|ENSG00000132485|O95218-2|ZRANB2 REV__nc|ENSG00000132485|O95218-2|ZRANB2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 369.876746 1106.60841 0.83398 0.00030847 -0.60889 -0.00022522 0.22508 8.3253E-05 369.87684038280145 24.17 0.3101 21.342 21.159 21.469 -2.8273 0.048393 -0.00053969 NaN 13.519 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 7307000 + 58053 19857 38719 39598 0.059368168803075605 SFLGVLLLL 9 Unmodified _SFLGVLLLL_ 0 0 0 nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;ENST00000552141.5_1_12:49495806-49497560:-|nuORF nc|ENSG00000139636|Q6UX01-3|LMBR1L nc|ENSG00000139636|Q6UX01-3|LMBR1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.6273803710938 1 974.628481 973.621205 0.58103 0.00056629 1.5249 0.0014862 2.1059 0.0020525 974.6298686699008 102.19 0.21841 96.016 95.854 96.072 -6.1757 16 9 2 0 0 0 0.042911 1 68520 68520 48.346 0 1 107540000 58054 5173 38720 39599 67743 67743 0.13333880010532084 SFLHFPCTF 9 Unmodified _SFLHFPCTF_ 0 0 0 REV__ENST00000470052.5_1_10:122611372-122611564:+|nuORF REV__ENST00000470052.5_1_10:122611372-122611564:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8425598144531 3 366.840756 1097.50044 NaN NaN NaN NaN NaN NaN NaN 28.741 1 28.679 28.179 29.179 -0.062159 0 0 0 0.81228 1 14844 14844 5.7319 0.43497 1 + 58055 27473 38721 39600 67744 67744 -0.044412709746211476 SFLKFHPEL 9 Unmodified _SFLKFHPEL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2071838378906 3 373.206203 1116.59678 0.77333 0.00028861 0.11659 4.3511E-05 0.88992 0.00033212 373.2067232824585 57.964 0.29716 57.898 57.714 58.011 -0.066032 32 14 3 0 0 0 0.08691 1 31543 31543 27.223 17.679 1 7264000 58056 315 38722 39601 67745 67745 0.04314619856995705 SFLKFHPEL 9 Unmodified _SFLKFHPEL_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2068176269531 3 373.206203 1116.59678 1.5025 0.00056074 -1.0591 -0.00039525 0.44344 0.0001655 373.2055790599189 90.045 0.26595 83.869 83.702 83.968 -6.1757 25 14 2 0 0 0 0.039985 1 59439 59439 45.74 23.082 1 11243000 58057 315 38722 39601 67746 67746 0.04314619856995705 SFLLLEEFLF 10 Unmodified _SFLLLEEFLF_ 0 0 0 REV__ENST00000563969.5_1_16:67314567-67322708:+|nuORF REV__ENST00000563969.5_1_16:67314567-67322708:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.3395385742188 2 629.341915 1256.66928 0.18775 0.00011816 -3.0283 -0.0019058 -2.8406 -0.0017877 629.3396802079772 82.298 0.21139 82.298 82.149 82.36 0 15 9 2 0 0 0 0.66569 1 45614 45614 6.7232 0.51738 1 281920 + 58058 23798 38723 39602 67747 67747 0.0512090913987322 SFLLNTGSF 9 Unmodified _SFLLNTGSF_ 0 0 0 REV__nc|ENSG00000254658|Q8NGG1|OR8J2 REV__nc|ENSG00000254658|Q8NGG1|OR8J2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.1649780273438 2 493.2531 984.491647 0.57553 0.00028388 -1.3369 -0.00065943 -0.76137 -0.00037555 493.25272891009917 73.392 0.18548 73.392 73.318 73.503 0 14 11 2 0 0 0 0.49272 1 40852 40852 7.9102 0 1 764770 + 58059 29982 38724 39603 67748 67748 -0.0012192133942789951 SFLLTSFSF 9 Unmodified _SFLLTSFSF_ 0 0 0 REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF REV__ENST00000336967.7_1_19:54377816-54378302:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.1946411132812 2 524.771126 1047.5277 0.38141 0.00020015 -0.39292 -0.0002062 -0.011518 -6.0441E-06 524.7697769309841 65.415 0.25531 65.415 65.272 65.528 0 15 9 2 0 0 0 0.21367 1 36466 36466 4.756 0 1 918620 + 58060 25654 38725 39604 67749 67749 0.005835358374270072 SFLPQNKEEI 10 Unmodified _SFLPQNKEEI_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.8131103515625 2 602.814053 1203.61355 -0.29678 -0.00017891 -0.21359 -0.00012876 -0.51037 -0.00030766 602.8139921925069 48.211 0.23804 48.211 48.112 48.351 0 16 11 2 0 0 0 0.57918 1 26443 26443 18.373 11.084 1 3400800 58061 3541 38726 39605 67750 67750 0.019890759522922963 SFLPSQTSDWF 11 Unmodified _SFLPSQTSDWF_ 0 0 0 ENSG00000187997|ENST00000340363|C17orf99 ENSG00000187997|ENST00000340363|C17orf99 ENSG00000187997|ENST00000340363|C17orf99 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8724060058594 3 438.871549 1313.59282 1.8573 0.0008151 -0.24454 -0.00010732 1.6127 0.00070778 438.8716938766999 81.574 0.46104 81.634 81.371 81.832 0.059929 58 17 4 0 0 0 0.65846 1 45162 45162 4.1166 0.52957 1 6760000 58062 9616 38727 39606 67751 67751 -0.05143514427390983 SFLPTSPLLGF 11 Unmodified _SFLPTSPLLGF_ 0 0 0 ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 589.8278198242188 2 589.826432 1177.63831 NaN NaN NaN NaN NaN NaN NaN 101.58 1 95.4 94.9 95.9 -6.1757 0 0 0 0.25348 1 68160 68160 36.127 11.453 1 58063 12962 38728 39607 67752 67752 0.056597558256498814 SFLQNEDRERR 11 Unmodified _SFLQNEDRERR_ 0 0 0 nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1;ENST00000469797.5_1_14:75137455-75152321:-|nuORF nc|ENSG00000119682|O15033-2|AREL1 nc|ENSG00000119682|O15033-2|AREL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 725.36328125 2 725.363296 1448.71204 NaN NaN NaN NaN NaN NaN NaN 15.434 1 15.44 14.94 15.94 0.0057774 0 0 0 0.9435 1 7692 7692 0 0 1 58064 3453 38729 39608 67753 67753 0.005630722499972762 SFLRAFWR 8 Unmodified _SFLRAFWR_ 0 0 0 ENST00000533124.5_1_11:46958271-47130681:+|nuORF;ENST00000526424.5_1_11:46969642-47125317:+|nuORF;ENST00000522712.6_1_11:46958356-47074212:+|nuORF;ENST00000532840.5_1_11:46958356-47159359:+|nuORF;ENST00000527234.5_1_11:46958304-47179413:+|nuORF;nc|ENSG00000149179|Q9H6J7-3|CSTPP1;ENST00000525895.5_1_11:46958334-47183186:+|nuORF;nc|ENSG00000149179|Q9H6J7-4|CSTPP1;ENSG00000149179|ENST00000278460|CSTPP1;nc|ENSG00000149179|Q9H6J7-2|CSTPP1 ENST00000533124.5_1_11:46958271-47130681:+|nuORF ENST00000533124.5_1_11:46958271-47130681:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7991333007812 2 541.798343 1081.58213 NaN NaN NaN NaN NaN NaN NaN 15.82 1 15.82 15.32 16.32 0 0 0 0 0.97444 1 7656 7656 0.79363 0 1 58065 5987 38730 39609 67754 67754 0.04460592499503946 SFLRCYRP 8 Unmodified _SFLRCYRP_ 0 0 0 ENST00000392975.6_1_17:61511323-61511650:-|nuORF ENST00000392975.6_1_17:61511323-61511650:-|nuORF ENST00000392975.6_1_17:61511323-61511650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7705688476562 2 521.268561 1040.52257 -0.41718 -0.00021746 -0.65748 -0.00034272 -1.0747 -0.00056018 521.2681114810836 35.041 0.3373 34.819 34.6 34.938 -0.2224 35 14 3 0 0 0 0.80232 1 18267 18267 5.2307 0 1 3026000 58066 12687 38731 39610 67755 67755 0.003929534938151846 SFLSRSDSY 9 Unmodified _SFLSRSDSY_ 0 0 0 nc|ENSG00000255569|A0A0B4J248|TRAV1-1 nc|ENSG00000255569|A0A0B4J248|TRAV1-1 nc|ENSG00000255569|A0A0B4J248|TRAV1-1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2493286132812 2 531.248546 1060.48254 1.0777 0.00057254 0.70651 0.00037533 1.7842 0.00094787 531.248973698881 71.786 0.37692 65.61 65.419 65.796 -6.1757 34 20 2 0 0 0 0.16226 1 46893 46893 26.884 2.2098 1 58747000 58067 16589 38732 39611 67756 67756 -0.04528314695744484 SFLSTECVCI 10 Unmodified _SFLSTECVCI_ 0 0 0 nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.1699523925781 3 367.836682 1100.48822 1.1588 0.00042625 3.8065 0.0014002 4.9653 0.0018264 368.1716030400764 17.84 0.18861 15.254 15.161 15.349 -2.5866 27 16 2 0 0 0 0.23821 1 9314 9314 2.086 0.17963 1 1869700 58068 16266 38733 39612 67757 67757 -0.05800675499949648 SFLSVVYWF 9 Unmodified _SFLSVVYWF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|198|1|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|198|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2937622070312 2 574.294768 1146.57498 0.44531 0.00025574 -3.6737 -0.0021098 -3.2284 -0.001854 574.2931984107637 63.444 0.26836 62.958 62.793 63.061 -0.48617 18 11 2 0 0 0 0.41742 1 34560 34560 11.64 0 1 1629900 + 58069 16781 38734 39613 67758 67758 0.007558151084140263 SFLTLNFHF 9 Unmodified _SFLTLNFHF_ 0 0 0 REV__CATSPERB-ATXN3|4|fusion;REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.1962890625 3 375.862437 1124.56548 0.2502 9.404E-05 1.3547 0.00050917 1.6049 0.00060321 376.1973136068372 56.59 0.18023 56.521 56.458 56.638 -0.068737 10 8 2 0 0 0 0.48152 1 30801 30801 5.2969 0.39987 1 3641600 + 58070 19943;16757 38735 39614 67759 67759 0.008180468229056714 SFLYKHVF 8 Unmodified _SFLYKHVF_ 0 0 0 ENST00000507415.1_1_5:138699473-138699677:+|nuORF ENST00000507415.1_1_5:138699473-138699677:+|nuORF ENST00000507415.1_1_5:138699473-138699677:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7809448242188 2 520.781828 1039.5491 0.12782 6.6566E-05 -2.3126 -0.0012044 -2.1848 -0.0011378 520.780050706238 75.962 0.2066 76.01 75.927 76.133 0.047943 15 8 3 0 0 0 0.79669 1 41908 41908 8.5933 2.2392 1 2771100 58071 14536 38736 39615 67760 67760 0.030909656567928323 SFLYNYEY 8 Unmodified _SFLYNYEY_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.2855834960938 2 549.742565 1097.47058 0.97576 0.00053642 -0.75663 -0.00041595 0.21913 0.00012047 549.7419647321973 47.927 0.1602 42.693 42.58 42.74 -5.2339 14 9 2 0 0 0 8.7369 1 29741 29741 5.7604 0 1 8698400 58072 8841 38737 39616 67761 67761 -0.07425931438956468 SFMGQLLQF 9 Oxidation (M) _SFM(Oxidation (M))GQLLQF_ SFM(1)GQLLQF SFM(55)GQLLQF 0 0 1 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;ENST00000488952.1_1_2:96809564-96810280:-|nuORF;ENSG00000158050|ENST00000288943|DUSP2;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7678833007812 2 543.76806 1085.52157 0.44351 0.00024117 -2.3503 -0.001278 -1.9068 -0.0010368 543.7678860381743 80.653 0.30122 80.711 80.563 80.864 0.057587 24 11 4 0 0 0 0.031062 1 44587 44587 54.774 31.625 1 5461000 58073 3548;3497 38738 39617 67762 67762 620 -0.017773056657460984 SFMGQLLQF 9 Unmodified _SFMGQLLQF_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4;ENST00000488952.1_1_2:96809564-96810280:-|nuORF;ENSG00000158050|ENST00000288943|DUSP2;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4;ENSG00000120129|ENST00000239223|DUSP1 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7743530273438 2 535.770603 1069.52665 4.371 0.0023419 1.6946 0.00090792 6.0656 0.0032498 535.7716122633988 99.151 0.13791 99.122 99.051 99.189 -0.028282 7 4 2 0 0 0 0.25681 1 55093 55093 19.257 5.7491 1 1996800 58074 3548;3497 38738 39618 67763 67763 -0.005330018031372674 SFMPNSPRF 9 Oxidation (M) _SFM(Oxidation (M))PNSPRF_ SFM(1)PNSPRF SFM(54)PNSPRF 0 0 1 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7550659179688 2 549.755484 1097.49641 0.45598 0.00025068 -0.2725 -0.00014981 0.18348 0.00010087 549.7554287036861 40.533 0.23237 40.538 40.382 40.614 0.0050545 24 10 3 0 0 0 0.032796 1 21589 21589 53.833 37.986 1 7413700 58075 6719 38739 39619 67764 67764 1168 -0.048433604683168596 SFMPNSPRF 9 Unmodified _SFMPNSPRF_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.28759765625 2 541.758027 1081.5015 0.062364 3.3786E-05 0.56109 0.00030397 0.62345 0.00033776 541.7586635874509 51.72 0.15844 51.661 51.573 51.731 -0.058918 13 7 2 0 0 0 0.19758 1 28023 28023 13.042 4.4492 1 1271400 58076 6719 38739 39620 67765 67765 -0.03599056605685291 SFMPNSPRFLL 11 Unmodified _SFMPNSPRFLL_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 654.8431396484375 2 654.842091 1307.66963 1.1146 0.00072989 0.69502 0.00045513 1.8096 0.001185 655.3444130515358 96.362 0.18391 90.186 90.069 90.253 -6.1757 16 10 2 0 0 0 0.0056475 1 63853 63853 74.2 41.414 1 12913000 58077 6719 38740 39621 67766 67766 0.028100055881168373 SFMRRNRDP 9 Unmodified _SFMRRNRDP_ 0 0 0 ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 ENSG00000142675|ENST00000361530|CNKSR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2962036132812 2 589.796006 1177.57746 0.8093 0.00047732 4.1259 0.0024335 4.9352 0.0029108 590.8003878696552 49.923 0.57829 49.531 49.333 49.911 -0.3923 92 28 5 0 0 0 0.34999 1 26943 26943 14.838 0.93222 1 32925000 58078 5438 38741 39622 67767 67767 -0.004226597055776438 SFNFFVFFF 9 Unmodified _SFNFFVFFF_ 0 0 0 nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3;ENST00000472397.5_1_1:155226487-155230214:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF nc|ENSG00000116521|O14828-2|SCAMP3 nc|ENSG00000116521|O14828-2|SCAMP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.29052734375 2 601.289485 1200.56442 NaN NaN NaN NaN NaN NaN NaN 80.081 1 79.592 79.092 80.092 -0.48932 0 0 0 0.85737 1 43862 43862 0.6015 0.076735 1 58079 3225 38742 39623 67768 67768 -0.02784167545996752 SFNGDCEY 8 Unmodified _SFNGDCEY_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.6663208007812 2 467.666 933.317447 0.81251 0.00037998 1.0639 0.00049753 1.8764 0.00087752 467.6664735262733 49.389 0.25385 49.389 49.256 49.51 0 19 11 2 0 0 0 0.80232 1 27167 27167 5.2307 2.3415 1 3784500 58080 10523 38743 39624 67769 67769 -0.151878698270707 SFNGDCEY 8 Unmodified _SFNGDCEY_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 467.666 933.317447 0.81251 0.00037998 1.0639 0.00049753 1.8764 0.00087752 467.6664735262733 49.389 0.25385 49.389 49.256 49.51 0 -0.038211 2.1459E-05 NaN 5.2307 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3784500 58081 10523 38743 39624 -0.151878698270707 SFNGDCEY 8 Unmodified _SFNGDCEY_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 467.666 933.317447 0.76181 0.00035627 1.0291 0.00048125 1.7909 0.00083753 467.66646849986734 49.858 0.25431 49.466 49.313 49.568 -0.3923 0.038211 -1.1107E-05 NaN 5.2307 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3054800 58082 10523 38743 39624 -0.151878698270707 SFNNFMLRI 9 Unmodified _SFNNFMLRI_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2968139648438 2 571.294776 1140.575 0.59858 0.00034197 2.505 0.0014311 3.1036 0.0017731 571.2962975612367 90.659 0.30925 90.165 89.954 90.263 -0.49458 23 14 2 0 0 0 0.2001 1 49536 49536 23.148 5.0134 1 1795800 58083 5005 38744 39625 67770 67770 0.010334918367789214 SFNNFMLRI 9 Unmodified _SFNNFMLRI_ 0 0 0 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.294776 1140.575 0.35729 0.00020412 3.6044 0.0020592 3.9617 0.0022633 571.2968832340301 90.105 0.24752 90.105 89.985 90.233 0 -0.10666 8.217E-05 NaN 23.148 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 505360 58084 5005 38744 39625 0.010334918367789214 SFNPLTSLLQW 11 Unmodified _SFNPLTSLLQW_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.3446044921875 2 653.34552 1304.67649 0.77869 0.00050875 1.583 0.0010343 2.3617 0.001543 653.3465634820786 102.13 0.10574 95.95 95.898 96.003 -6.1757 14 4 4 0 0 0 0.027203 1 68545 68545 75.571 50.58 1 35706000 58085 10194 38745 39626 67771 67771 0.03633641740339044 SFNPYSEFI 9 Unmodified _SFNPYSEFI_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16870817-16871009:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;nc|ENSG00000162521|Q09028-4|RBBP4 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MSMS AL20221201_MKP_PDAC_01 4 552.2379760742188 2 552.25584 1102.49713 NaN NaN NaN NaN NaN NaN NaN 88.511 1 82.336 81.836 82.836 -6.1757 0 0 0 0.18753 1 58401 58401 32.305 10.559 1 58086 2015;6869 38746 39627 67772 67772 -0.050022425476072385 SFNQLAFN 8 Unmodified _SFNQLAFN_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7292175292969 2 470.729792 939.445031 NaN NaN NaN NaN NaN NaN NaN 16.101 1 16.101 15.601 16.601 0 0 0 0 0.97444 1 7821 7821 2.5775 0 1 58087 10134 38747 39628 67773 67773 -0.02711361170725013 SFNQLAFN 8 Unmodified _SFNQLAFN_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7270202636719 2 470.729792 939.445031 NaN NaN NaN NaN NaN NaN NaN 16.637 1 16.637 16.137 17.137 0 0 0 0 0.94061 1 8130 8130 12.532 3.1841 1 58088 10134 38747 39628 67774 67774 -0.02711361170725013 SFNRHPQY 8 Unmodified _SFNRHPQY_ 0 0 0 REV__ENST00000522068.5_1_19:48744304-48759075:-|nuORF REV__ENST00000522068.5_1_19:48744304-48759075:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1701965332031 3 350.170152 1047.48863 0.41315 0.00014467 0.57847 0.00020256 0.99162 0.00034724 350.1703966244215 47.669 0.32822 47.63 47.455 47.783 -0.038643 27 15 2 0 0 0 0.77186 1 25676 25676 8.1555 0 1 6379400 + 58089 28294 38748 39629 67775 67775 -0.03321751673570361 SFNSFLRTYSS 11 Unmodified _SFNSFLRTYSS_ 0 0 0 REV__nc|ENSG00000153560|Q9NZI7-4|UBP1 REV__nc|ENSG00000153560|Q9NZI7-4|UBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8797912597656 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 75.346 1 74.869 74.369 75.369 -0.47714 0 0 0 0.94165 1 41244 41244 1.3296 0.11481 1 + 58090 21178 38749 39630 67776 67776 -0.026887096787731934 SFPAHPSLL 9 Unmodified _SFPAHPSLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7638244628906 2 484.763635 967.512717 0.48591 0.00023555 -0.11558 -5.603E-05 0.37033 0.00017952 484.76348359132584 55.287 0.56286 54.809 54.528 55.091 -0.47798 70 26 4 0 0 0 0.087258 2 30024 29919;30024 36.044 0 1 5653000 58091 319 38750 39631 67777;67778 67778 0.027660887600859496 SFPAHPSLL 9 Unmodified _SFPAHPSLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7637634277344 2 484.763635 967.512717 0.49638 0.00024063 -0.026105 -1.2655E-05 0.47028 0.00022797 484.76362850424545 54.91 0.47812 54.842 54.598 55.076 -0.068737 48 23 3 0 0 0 0.026094 2 29772 29772;29885 57.471 13.064 1 5108800 58092 319 38750 39631 67779;67780 67779 0.027660887600859496 SFPAHPSLL 9 Unmodified _SFPAHPSLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7647094726562 2 484.763635 967.512717 1.1725 0.00056838 0.17528 8.4969E-05 1.3478 0.00065334 484.7636545475857 60.691 0.62718 54.543 54.274 54.901 -6.1478 53 33 2 0 0 0 0.013323 2 39008 39008;39124 71.134 20.279 1 30360000 58093 319 38750 39631 67781;67782 67781 0.027660887600859496 SFPAHPSLLL 10 Unmodified _SFPAHPSLLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.762939453125 2 541.305667 1080.59678 0.25901 0.0001402 1.8101 0.00097981 2.0691 0.00112 541.3067190185309 69.919 0.43961 69.95 69.729 70.168 0.030914 50 22 3 0 0 0 0.19561 1 38461 38461 30.637 3.7529 1 9027700 58094 319 38751 39632 67783 67783 0.059706198569983826 SFPAMITPAY 10 Oxidation (M) _SFPAM(Oxidation (M))ITPAY_ SFPAM(1)ITPAY SFPAM(46)ITPAY 0 0 1 nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP nc|ENSG00000197893|Q86VF7-4|NRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.2717895507812 2 557.267893 1112.52123 1.3752 0.00076638 1.1003 0.00061318 2.4756 0.0013796 557.2689473816986 70.842 0.2809 70.878 70.698 70.979 0.035507 23 12 3 0 0 0 0.1028 1 39004 39004 46.021 11.919 1 3834900 58095 10019 38752 39633 67784 67784 1628 -0.03052725385600752 SFPCPHPR 8 Unmodified _SFPCPHPR_ 0 0 0 REV__ENST00000450050.6_1_9:132399505-132399790:-|nuORF REV__ENST00000450050.6_1_9:132399505-132399790:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7262268066406 2 470.726529 939.438506 NaN NaN NaN NaN NaN NaN NaN 16.314 1 16.314 15.814 16.814 0 0 0 0 0.97348 1 7943 7943 5.7604 0.52976 1 + 58096 27196 38753 39634 67785 67785 -0.03363577603079193 SFPEHPAFL 9 Unmodified _SFPEHPAFL_ 0 0 0 nc|ENSG00000133318|O95197-7|RTN3;nc|ENSG00000133318|O95197-2|RTN3;ENSG00000133318|ENST00000377819|RTN3 nc|ENSG00000133318|O95197-7|RTN3 nc|ENSG00000133318|O95197-7|RTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7618408203125 2 522.761092 1043.50763 0.010049 5.2531E-06 1.7232 0.00090084 1.7333 0.00090609 522.7618681817902 61.671 0.48396 61.183 60.903 61.387 -0.48764 47 22 3 0 0 0 0.25297 1 33534 33534 19.439 7.7987 1 1978700 58097 4508 38754 39635 67786 67786 -0.01238215102534923 SFPFCTCSSSY 11 Unmodified _SFPFCTCSSSY_ 0 0 0 REV__ENST00000348370.8_1_15:59368388-59373429:+|nuORF REV__ENST00000348370.8_1_15:59368388-59373429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7357788085938 2 614.736099 1227.45765 0.45435 0.00027931 -0.94337 -0.00057992 -0.48902 -0.00030062 614.7358454453329 50.229 0.40284 50.229 49.986 50.389 0 50 15 4 0 0 0 0.71341 1 27763 27763 2.9952 0.69251 1 10743000 + 58098 25770 38755 39636 67787 67787 -0.14698453885011986 SFPFQHLIAI 10 Unmodified _SFPFQHLIAI_ 0 0 0 REV__ENSG00000127249|ENST00000342695|ATP13A4 REV__ENSG00000127249|ENST00000342695|ATP13A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8883056640625 3 391.553603 1171.63898 0.54451 0.0002132 -1.5541 -0.00060853 -1.0096 -0.00039532 391.8871405863187 58.467 0.29655 58.406 58.156 58.452 -0.060719 35 14 3 0 0 0 0.67046 1 31804 31804 6.1918 0.78914 1 4757000 + 58099 19573 38756 39637 67788 67788 0.06002595265385935 SFPFSFYHSI 10 Unmodified _SFPFSFYHSI_ 0 0 0 REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF REV__ENST00000486875.1_1_20:5107738-5156066:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2944946289062 2 616.292756 1230.57096 NaN NaN NaN NaN NaN NaN NaN 57.545 1 57.055 56.555 57.555 -0.48974 0 0 0 0.96981 1 31274 31274 3.9444 0.66309 1 + 58100 27814 38757 39638 67789 67789 -0.03510274385257617 SFPGARAPK 9 Unmodified _SFPGARAPK_ 0 0 0 REV__nc|ENSG00000164270|Q13639-8|HTR4 REV__nc|ENSG00000164270|Q13639-8|HTR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7614135742188 2 465.761426 929.5083 0.25996 0.00012108 2.3558 0.0010972 2.6158 0.0012183 465.76210290498693 74.938 0.27368 74.984 74.813 75.087 0.045959 26 12 3 0 0 0 0.43463 1 41276 41276 10.824 2.9138 1 2948400 + 58101 29748 38758 39639 67790 67790 0.04072624337186426 SFPGPSPYAQ 10 Unmodified _SFPGPSPYAQ_ 0 0 0 ENST00000372546.8_1_9:131851572-131851956:+|nuORF ENST00000372546.8_1_9:131851572-131851956:+|nuORF ENST00000372546.8_1_9:131851572-131851956:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.178955078125 3 350.834547 1049.48181 0.96708 0.00033928 -0.58331 -0.00020465 0.38377 0.00013464 350.8345183678816 24.345 0.36912 21.517 21.34 21.709 -2.8273 43 20 3 0 0 0 0.23767 1 13143 13143 6.1918 0.40842 1 8788500 58102 12384 38759 39640 67791 67791 -0.04095109344825687 SFPHPLPSL 9 Unmodified _SFPHPLPSL_ 0 0 0 nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1 nc|ENSG00000168066|Q15637-6|SF1 nc|ENSG00000168066|Q15637-6|SF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.771484375 2 497.77146 993.528367 NaN NaN NaN NaN NaN NaN NaN 62.508 1 62.02 61.52 62.52 -0.48764 0 0 0 0.04157 1 34062 34062 61.357 7.7819 1 58103 16366 38760 39641 67792 67792 0.03134375277147683 SFPHPLPSL 9 Unmodified _SFPHPLPSL_ 0 0 0 nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1 nc|ENSG00000168066|Q15637-6|SF1 nc|ENSG00000168066|Q15637-6|SF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7717590332031 2 497.77146 993.528367 0.38468 0.00019148 -0.10481 -5.217E-05 0.27987 0.00013931 497.77147852229785 62.156 0.29465 62.123 61.906 62.201 -0.032787 33 14 3 0 0 0 0.0067112 1 33876 33876 112.59 18.71 1 10262000 58104 16366 38760 39641 67793 67793 0.03134375277147683 SFPIKRHKRKS 11 Unmodified _SFPIKRHKRKS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.9494018554688 3 461.949239 1382.82589 0.60016 0.00027724 0.048514 2.2411E-05 0.64867 0.00029965 461.9488091695074 100.91 0.15056 100.91 100.83 100.98 0 9 5 3 0 0 0 0.73115 1 55694 55694 0.45452 0.046251 1 932670 + 58105 18248 38761 39642 67794 67794 0.14978631873577797 SFPIKRHKRKS 11 Unmodified _SFPIKRHKRKS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.9483642578125 3 461.949239 1382.82589 0.18848 8.7068E-05 -1.1031 -0.0005096 -0.91467 -0.00042253 461.94848394603827 101 0.097725 100.87 100.81 100.91 -0.13293 7 3 3 0 0 0 0.73115 1 55134 55134 0.45452 0.046251 1 825090 + 58106 18248 38761 39642 67795 67795 0.14978631873577797 SFPIKRHKRKS 11 Unmodified _SFPIKRHKRKS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 461.949239 1382.82589 0.60016 0.00027724 0.048514 2.2411E-05 0.64867 0.00029965 461.9488091695074 100.91 0.15056 100.91 100.83 100.98 0 0.021845 0.0013029 NaN 0.45452 9 5 3 NaN NaN NaN NaN 0 NaN NaN 0 932670 + 58107 18248 38761 39642 0.14978631873577797 SFPIKRHKRKS 11 Unmodified _SFPIKRHKRKS_ 0 0 0 REV__ENSG00000102699|ENST00000381989|PARP4 REV__ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 461.949239 1382.82589 0.18848 8.7068E-05 -1.1031 -0.0005096 -0.91467 -0.00042253 461.94848394603827 101 0.097725 100.87 100.81 100.91 -0.13293 -0.021845 -0.00029315 NaN 0.45452 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 825090 + 58108 18248 38761 39642 0.14978631873577797 SFPILYWF 8 Unmodified _SFPILYWF_ 0 0 0 ENST00000473231.5_1_1:157648502-157666139:-|nuORF;nc|ENSG00000160856|Q96P31-2|FCRL3;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3 ENST00000473231.5_1_1:157648502-157666139:-|nuORF ENST00000473231.5_1_1:157648502-157666139:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7459716796875 2 536.778754 1071.54295 0.56196 0.00030165 2.3452 0.0012588 2.9071 0.0015605 536.7821261544033 65.128 0.99194 58.952 58.47 59.461 -6.1757 110 55 3 0 0 0 8.7369 1 42071 42071 19.439 8.6151 1 57042000 58109 6760 38762 39643 67796 67796 0.010044474252708824 SFPNIQFTTL 10 Unmodified _SFPNIQFTTL_ 0 0 0 REV__ENSG00000177839|ENST00000316105|PCDHB9 REV__ENSG00000177839|ENST00000316105|PCDHB9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8060913085938 2 584.305864 1166.59717 1.4163 0.00082753 -1.5042 -0.00087893 -0.087965 -5.1398E-05 584.8054239550032 100.54 0.13315 100.5 100.43 100.56 -0.04216 10 4 4 0 0 0 0.23566 1 55874 55874 7.2892 1.0834 1 3947300 + 58110 23006 38763 39644 67797 67797 0.020539947861834662 SFPPCLWVNL 10 Unmodified _SFPPCLWVNL_ 0 0 0 ENST00000410102.5_1_2:188312803-188312920:-|nuORF ENST00000410102.5_1_2:188312803-188312920:-|nuORF ENST00000410102.5_1_2:188312803-188312920:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.301513671875 2 588.299527 1174.5845 1.131 0.00066537 1.2509 0.00073592 2.3819 0.0014013 588.3002834574227 33.572 0.38891 29.587 29.525 29.914 -3.9853 30 21 2 0 0 0 0.66569 1 19302 19302 6.7232 0 1 10518000 58111 12972 38764 39645 67798 67798 0.004192601222939629 SFPPCLWVNL 10 Unmodified _SFPPCLWVNL_ 0 0 0 ENST00000410102.5_1_2:188312803-188312920:-|nuORF ENST00000410102.5_1_2:188312803-188312920:-|nuORF ENST00000410102.5_1_2:188312803-188312920:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.299527 1174.5845 -0.47784 -0.00028112 5.489 0.0032292 5.0112 0.0029481 588.3037719519851 29.712 0.060564 29.712 29.662 29.722 0 0.062795 0.0047841 NaN 6.7232 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 949160 58112 12972 38764 39645 0.004192601222939629 SFPPSGEGRL 10 Unmodified _SFPPSGEGRL_ 0 0 0 ENST00000014914.5_1_12:13044330-13044525:+|nuORF ENST00000014914.5_1_12:13044330-13044525:+|nuORF ENST00000014914.5_1_12:13044330-13044525:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2301025390625 2 523.766906 1045.51926 0.76411 0.00040021 -2.4988 -0.0013088 -1.7347 -0.00090857 523.7655449195782 49.936 0.4035 49.936 49.606 50.009 0 31 18 3 0 0 0 0.18632 1 27375 27375 32.305 2.0807 1 3863300 58113 10966 38765 39646 67799 67799 -0.0016801807917090628 SFPPSGEGRL 10 Unmodified _SFPPSGEGRL_ 0 0 0 ENST00000014914.5_1_12:13044330-13044525:+|nuORF ENST00000014914.5_1_12:13044330-13044525:+|nuORF ENST00000014914.5_1_12:13044330-13044525:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.766906 1045.51926 0.75105 0.00039337 1.1189 0.00058604 1.8699 0.00097941 523.7678060268568 50.314 0.18054 49.921 49.791 49.971 -0.3923 -0.0072369 0.0018228 NaN 32.305 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1418300 58114 10966 38765 39646 -0.0016801807917090628 SFPPVETLLL 10 Unmodified _SFPPVETLLL_ 0 0 0 ENST00000337508.8_1_12:2943970-2944168:-|nuORF ENST00000337508.8_1_12:2943970-2944168:-|nuORF ENST00000337508.8_1_12:2943970-2944168:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3223266601562 2 558.320983 1114.62741 1.2302 0.00068684 -1.3144 -0.00073383 -0.084158 -4.6987E-05 558.3204812164523 101.22 0.10207 95.047 95.004 95.107 -6.1757 15 6 3 0 0 0 0.33553 1 67924 67924 25.399 2.2509 1 37014000 58115 11929 38766 39647 67800 67800 0.0746835345139516 SFPPWTSSI 9 Unmodified _SFPPWTSSI_ 0 0 0 REV__ENST00000459892.5_1_2:26533861-26534227:-|nuORF REV__ENST00000459892.5_1_2:26533861-26534227:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2528991699219 2 511.2531 1020.49165 NaN NaN NaN NaN NaN NaN NaN 65.066 1 64.582 64.082 65.082 -0.48428 0 0 0 0.6032 1 35505 35505 12.532 0.89125 1 + 58116 27283 38767 39648 67801 67801 -0.01777921339430577 SFPQFTNRCL 10 Unmodified _SFPQFTNRCL_ 0 0 0 ENST00000464728.5_1_16:841010-841472:+|nuORF ENST00000464728.5_1_16:841010-841472:+|nuORF ENST00000464728.5_1_16:841010-841472:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.798095703125 2 606.79514 1211.57573 2.1228 0.0012881 3.7794 0.0022933 5.9023 0.0035815 606.7995771400955 94.854 0.4723 94.868 94.618 95.091 0.014244 46 17 4 0 0 0 0.50362 1 52699 52699 16.149 2.2431 1 3938800 58117 13723 38768 39649 67802 67802 -0.021597135141519175 SFPQLKLTF 9 Unmodified _SFPQLKLTF_ 0 0 0 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3101806640625 2 540.808042 1079.60153 0.037615 2.0342E-05 0.46544 0.00025172 0.50306 0.00027206 540.8085307944173 80.248 0.27589 80.305 80.198 80.474 0.057587 26 14 2 0 0 0 0.047788 1 44330 44330 45.7 27.553 1 34058000 58118 5104 38769 39650 67803 67803 0.06491503999745873 SFPQLKLTF 9 Unmodified _SFPQLKLTF_ 0 0 0 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 ENSG00000138772|ENST00000264908|ANXA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8087768554688 2 540.808042 1079.60153 1.0239 0.00055376 -0.41046 -0.00022198 0.61348 0.00033177 540.8079574842841 96.202 0.57227 90.026 89.748 90.32 -6.1757 91 34 4 0 0 0 0.028475 3 63842 63586;63715;63842 56.177 38.031 1 142580000 58119 5104 38769 39650 67804;67805;67806 67806 0.06491503999745873 SFPSGHSSFAF 11 Unmodified _SFPSGHSSFAF_ 0 0 0 nc|ENSG00000147535|Q8NEB5-2|PLPP5;nc|ENSG00000147535|Q8NEB5-3|PLPP5;ENSG00000147535|ENST00000424479|PLPP5 nc|ENSG00000147535|Q8NEB5-2|PLPP5 nc|ENSG00000147535|Q8NEB5-2|PLPP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8442993164062 3 390.845334 1169.51417 -0.019924 -7.787E-06 0.24361 9.5213E-05 0.22368 8.7426E-05 390.84535745299775 39.571 0.32277 39.274 39.049 39.371 -0.29716 21 14 2 0 0 0 0.71036 1 20900 20900 1.3296 0 1 1552500 58120 5859 38770 39651 67807 67807 -0.06380321941810507 SFQAPSFEAR 10 Unmodified _SFQAPSFEAR_ 0 0 0 REV__ENSG00000022840|ENST00000325954|RNF10 REV__ENSG00000022840|ENST00000325954|RNF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2796630859375 2 570.277638 1138.54072 1.2601 0.00071861 2.5922 0.0014783 3.8523 0.0021969 570.2790433433919 91.87 0.27737 91.901 91.745 92.022 0.030197 16 9 2 0 0 0 0.64628 1 51103 51103 8.7454 1.4562 1 4011500 + 58121 17113 38771 39652 67808 67808 -0.023006330504813377 SFQAPSFEAR 10 Unmodified _SFQAPSFEAR_ 0 0 0 REV__ENSG00000022840|ENST00000325954|RNF10 REV__ENSG00000022840|ENST00000325954|RNF10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.277638 1138.54072 1.2601 0.00071861 2.5922 0.0014783 3.8523 0.0021969 570.2790433433919 91.87 0.27737 91.901 91.745 92.022 0.030197 0 0 NaN 8.7454 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4011500 + 58122 17113 38771 39652 -0.023006330504813377 SFQDEEDMFMV 11 Unmodified _SFQDEEDMFMV_ 0 0 0 ENST00000513705.5_1_4:5205889-5347127:+|nuORF;nc|ENSG00000169302|Q8WU08-2|STK32A;nc|ENSG00000169302|Q8WU08-3|STK32A;ENST00000306304.10_1_5:146619197-146754823:+|nuORF;nc|ENSG00000152953|Q9NY57-2|STK32B;nc|ENSG00000165752|Q86UX6-2|STK32C;ENSG00000169302|ENST00000397936|STK32A;ENSG00000152953|ENST00000282908|STK32B;ENSG00000165752|ENST00000298630|STK32C ENST00000513705.5_1_4:5205889-5347127:+|nuORF ENST00000513705.5_1_4:5205889-5347127:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 689.27099609375 2 689.270503 1376.52645 NaN NaN NaN NaN NaN NaN NaN 103.43 1 103.38 102.88 103.88 -0.047928 0 0 0 0.94301 1 57437 57437 0.35063 0 1 58123 6224 38772 39653 67809 67809 -0.1467483437595547 SFQEQILI 8 Unmodified _SFQEQILI_ 0 0 0 REV__ENST00000475996.1_1_6:29695742-29695880:+|nuORF REV__ENST00000475996.1_1_6:29695742-29695880:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2697448730469 2 489.26875 976.522947 -0.11065 -5.4136E-05 0.095203 4.658E-05 -0.015444 -7.5563E-06 489.2686799875875 70.884 0.55226 70.884 70.565 71.117 0 162 48 4 0 0 0 0.77907 1 39589 39589 10.183 0 1 50750000 + 58124 27585 38773 39654 67810 67810 0.03374651694673503 SFQKQLSRM 9 Unmodified _SFQKQLSRM_ 0 0 0 REV__NCKAP5|p.Q110K|1|0.27|ENSG00000176771|chr2:133129991-133129991|G/T|missense_variant REV__NCKAP5|p.Q110K|1|0.27|ENSG00000176771|chr2:133129991-133129991|G/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.328857421875 2 562.797683 1123.58081 0.25954 0.00014607 -0.74927 -0.00042169 -0.48973 -0.00027562 562.7973582208274 37.156 0.19363 37.178 37.07 37.263 0.021542 12 8 2 0 0 0 0.19205 1 19732 19732 14.838 0 1 1235200 + 58125 30055 38774 39655 67811 67811 0.023965903484395312 SFQPLHLNC 9 Unmodified _SFQPLHLNC_ 0 0 0 ENST00000443422.1_1_1:226844394-226844625:-|nuORF ENST00000443422.1_1_1:226844394-226844625:-|nuORF ENST00000443422.1_1_1:226844394-226844625:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.8081665039062 2 529.758027 1057.5015 0.57902 0.00030674 -1.4806 -0.00078435 -0.90156 -0.00047761 529.7572976601857 72.842 0.44939 72.842 72.676 73.126 0 34 21 3 0 0 0 0.20139 1 40486 40486 10.824 0 1 1623200 58126 13423 38775 39656 67812 67812 -0.02495056605721402 SFQPLRRGGAG 11 Unmodified _SFQPLRRGGAG_ 0 0 0 REV__ENSG00000166016|ENST00000435224|ABTB2 REV__ENSG00000166016|ENST00000435224|ABTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.3113403320312 2 573.312346 1144.61014 -0.021738 -1.2463E-05 -0.41656 -0.00023882 -0.4383 -0.00025128 573.3122806630885 22.936 0.22544 22.936 22.861 23.087 0 14 12 2 0 0 0 0.721 1 11689 11689 2.2828 0.22302 1 700490 + 58127 22077 38776 39657 67813 67813 0.04361870688944691 SFQRTGTLAF 10 Unmodified _SFQRTGTLAF_ 0 0 0 ENSG00000132965|ENST00000380490|ALOX5AP ENSG00000132965|ENST00000380490|ALOX5AP ENSG00000132965|ENST00000380490|ALOX5AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5324401855469 3 376.532979 1126.57711 -0.62116 -0.00023389 0.4536 0.00017079 -0.16756 -6.3092E-05 376.53309056012694 34.519 0.19453 34.519 34.402 34.597 0 15 9 2 0 0 0 0.6606 1 18200 18200 3.8763 0 1 1909600 58128 4473 38777 39658 67814 67814 0.018882438462242135 SFQSDIYAFGI 11 Unmodified _SFQSDIYAFGI_ 0 0 0 ENST00000445336.2_1_X:74804463-74804925:+|nuORF ENST00000445336.2_1_X:74804463-74804925:+|nuORF ENST00000445336.2_1_X:74804463-74804925:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2984008789062 2 624.300778 1246.587 -0.33242 -0.00020753 -3.2962 -0.0020578 -3.6286 -0.0022653 624.2990213559694 55.292 0.17264 55.292 55.241 55.414 0 14 7 2 0 0 0 0.50515 1 30720 30720 16.149 1.3108 1 4957700 58129 13455 38778 39659 67815 67815 -0.026426129390756614 SFRADLGMMS 10 Unmodified _SFRADLGMMS_ 0 0 0 ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF ENST00000584712.5_1_17:7476159-7478717:+|nuORF ENST00000584712.5_1_17:7476159-7478717:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.75341796875 2 557.754627 1113.4947 0.0025254 1.4086E-06 -0.53378 -0.00029772 -0.53125 -0.00029631 557.7543640997108 29.419 0.16238 29.419 29.308 29.47 0 21 7 4 0 0 0 0.50362 1 15219 15219 16.149 0.30192 1 2320500 58130 15558 38779 39660 67816 67816 -0.057507375485783996 SFRADLGMMS 10 Unmodified _SFRADLGMMS_ 0 0 0 ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF ENST00000584712.5_1_17:7476159-7478717:+|nuORF ENST00000584712.5_1_17:7476159-7478717:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.754627 1113.4947 0.0025254 1.4086E-06 -0.53378 -0.00029772 -0.53125 -0.00029631 557.7543640997108 29.419 0.16238 29.419 29.308 29.47 0 0 0 NaN 16.149 21 7 4 NaN NaN NaN NaN 0 NaN NaN 0 2320500 58131 15558 38779 39660 -0.057507375485783996 SFRFLLCYL 9 Unmodified _SFRFLLCYL_ 0 0 0 REV__ENST00000485112.1_1_2:122288082-122288148:-|nuORF REV__ENST00000485112.1_1_2:122288082-122288148:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.8792419433594 3 387.875689 1160.60524 NaN NaN NaN NaN NaN NaN NaN 25.025 1 22.142 21.642 22.642 -2.8831 0 0 0 0.056448 1 13664 13664 49.554 0 1 + 58132 27773 38780 39661 67817 67817 0.03135850501962523 SFRHDKLTFID 11 Unmodified _SFRHDKLTFID_ 0 0 0 ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1 ENSG00000182871|ENST00000651438|COL18A1 ENSG00000182871|ENST00000651438|COL18A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 689.8592529296875 2 689.859326 1377.7041 0.83155 0.00057365 -0.6333 -0.00043689 0.19825 0.00013677 689.8587030481796 54.978 0.45972 49.112 48.881 49.34 -5.866 69 28 3 0 0 0 0.46131 1 34976 34976 18.373 1.8072 1 78469000 58133 9096 38781 39662 67818 67818 0.03035545000534512 SFRLEEPGFYM 11 Unmodified _SFRLEEPGFYM_ 0 0 0 REV__ENSG00000157240|ENST00000287934|FZD1 REV__ENSG00000157240|ENST00000287934|FZD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2183532714844 3 459.216551 1374.62782 0.3065 0.00014075 2.898 0.0013308 3.2045 0.0014716 459.21772353496806 20.169 0.14672 20.179 20.111 20.257 0.010553 11 7 2 0 0 0 0.7326 1 10293 10293 0.40827 0 1 568470 + 58134 21374 38782 39663 67819 67819 -0.04450594891068249 SFRLGQHLY 9 Unmodified _SFRLGQHLY_ 0 0 0 nc|ENSG00000165731|P07949-2|RET;ENSG00000165731|ENST00000355710|RET nc|ENSG00000165731|P07949-2|RET nc|ENSG00000165731|P07949-2|RET MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.797119140625 2 560.79854 1119.58253 NaN NaN NaN NaN NaN NaN NaN 30.85 1 30.85 30.35 31.35 0 0 0 0 0.82396 1 16046 16046 4.756 0.42677 1 58135 7382 38783 39664 67820 67820 0.027519674287077578 SFRLRKDF 8 Unmodified _SFRLRKDF_ 0 0 0 REV__ENSG00000153046|ENST00000397588|CDYL REV__ENSG00000153046|ENST00000397588|CDYL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.799072265625 2 534.801083 1067.58761 NaN NaN NaN NaN NaN NaN NaN 78.308 1 77.822 77.322 78.322 -0.48596 0 0 0 0.97444 1 42889 42889 2.8892 0 1 + 58136 21148 38784 39665 67821 67821 0.05652271291319266 SFRNLLKRVY 10 Unmodified _SFRNLLKRVY_ 0 0 0 ENSG00000204479|ENST00000376098|PRAMEF17 ENSG00000204479|ENST00000376098|PRAMEF17 ENSG00000204479|ENST00000376098|PRAMEF17 MSMS AL20221201_MKP_PDAC_01 4 648.2350463867188 2 648.382771 1294.75099 NaN NaN NaN NaN NaN NaN NaN 68.437 1 62.261 61.761 62.761 -6.1757 0 0 0 0.96981 1 44665 44665 3.9444 0 1 58137 10291 38785 39666 67822 67822 0.11540449342373904 SFRPRPLY 8 Unmodified _SFRPRPLY_ 0 0 0 REV__ENST00000522519.5_1_8:72756566-72875195:+|nuORF REV__ENST00000522519.5_1_8:72756566-72875195:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2904663085938 2 518.290351 1034.56615 0.31328 0.00016237 -0.13325 -6.9063E-05 0.18003 9.3306E-05 518.2903650773541 62.953 0.397 62.953 62.749 63.146 0 43 16 4 0 0 0 0.67481 1 35120 35120 19.439 2.3261 1 8383200 + 58138 28303 38786 39667 67823 67823 0.05024886262594919 SFRQDGLF 8 Unmodified _SFRQDGLF_ 0 0 0 REV__ENSG00000050555|ENST00000361069|LAMC3 REV__ENSG00000050555|ENST00000361069|LAMC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 484.7205810546875 2 485.243067 968.47158 0.68152 0.0003307 -0.13434 -6.5186E-05 0.54718 0.00026552 485.2428108198045 48.075 0.37663 42.841 42.628 43.005 -5.2339 36 22 2 0 0 0 8.7369 1 29893 29893 10.824 0 1 16355000 + 58139 17261 38787 39668 67824 67824 -0.013916722793965164 SFRQPYAGF 9 Unmodified _SFRQPYAGF_ 0 0 0 nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2 nc|ENSG00000197620|Q8TE69-2|EOLA1 nc|ENSG00000197620|Q8TE69-2|EOLA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.5122985839844 3 358.178536 1071.51378 -1.3016 -0.00046622 0.19438 6.9623E-05 -1.1073 -0.0003966 358.1786127888417 32.454 0.22731 32.454 32.334 32.561 0 34 14 3 0 0 0 0.42049 1 16930 16930 11.495 11.495 1 22314000 58140 9898 38788 39669 67825 67825 -0.019116968710022775 SFRQPYAGF 9 Unmodified _SFRQPYAGF_ 0 0 0 nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2 nc|ENSG00000197620|Q8TE69-2|EOLA1 nc|ENSG00000197620|Q8TE69-2|EOLA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 358.178536 1071.51378 -1.3016 -0.00046622 0.19438 6.9623E-05 -1.1073 -0.0003966 358.1786127888417 32.454 0.22731 32.454 32.334 32.561 0 0.080926 7.7496E-05 NaN 11.495 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 22314000 58141 9898 38788 39669 -0.019116968710022775 SFRRQERW 8 Unmodified _SFRRQERW_ 0 0 0 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 REV__nc|ENSG00000205702|A0A087X1C5|CYP2D7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8060302734375 2 582.804688 1163.59482 0.25677 0.00014965 -0.65124 -0.00037955 -0.39447 -0.0002299 582.8044826318013 58.226 0.71611 57.736 57.267 57.983 -0.48991 58 34 3 0 0 0 0.80143 1 31787 31787 5.7604 1.816 1 2958200 + 58142 18024 38789 39670 67826 67826 0.019570038917663624 SFRRRQYF 8 Unmodified _SFRRRQYF_ 0 0 0 REV__nc|ENSG00000042832|P01266-2|TG REV__nc|ENSG00000042832|P01266-2|TG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.2981567382812 2 580.309606 1158.60466 2.715 0.0015755 -3.3674 -0.0019541 -0.65245 -0.00037862 580.8088812574853 100.05 0.16827 100.01 99.905 100.07 -0.036301 16 5 4 0 0 0 0.78849 1 55543 55543 9.3474 2.0582 1 5441200 + 58143 17209 38790 39671 67827 67827 0.03170191897129371 SFRRWAAG 8 Unmodified _SFRRWAAG_ 0 0 0 REV__ENST00000521322.1_1_5:171533890-171534875:-|nuORF REV__ENST00000521322.1_1_5:171533890-171534875:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.750732421875 2 475.751393 949.488233 NaN NaN NaN NaN NaN NaN NaN 15.928 1 15.928 15.428 16.428 0 0 0 0 0.97444 1 7719 7719 2.5775 0 1 + 58144 28243 38791 39672 67828 67828 0.011468733972151313 SFSAFQYDGR 10 Unmodified _SFSAFQYDGR_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1 nc|ENSG00000174373|Q6GYQ0|RALGAPA1 nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1800231933594 3 393.180605 1176.51999 NaN NaN NaN NaN NaN NaN NaN 69.667 1 69.188 68.688 69.688 -0.47903 0 0 0 1.0004 1 38085 38085 0.62683 0.35781 1 58145 8416 38792 39673 67829 67829 -0.061212234301592616 SFSALETDRL 10 Unmodified _SFSALETDRL_ 0 0 0 REV__ENST00000602306.1_1_12:53894339-53894564:-|nuORF REV__ENST00000602306.1_1_12:53894339-53894564:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.791259765625 2 569.790578 1137.5666 0.83859 0.00047782 -0.23578 -0.00013435 0.6028 0.00034347 569.7904118878347 47.296 0.24481 46.944 46.798 47.042 -0.3526 29 11 3 0 0 0 0.43662 1 25317 25317 29.082 29.082 1 7335400 + 58146 29260 38793 39674 67830 67830 0.0033221640114788897 SFSAMHQCIL 10 Unmodified _SFSAMHQCIL_ 0 0 0 ENSG00000130584|ENST00000245663|ZBTB46 ENSG00000130584|ENST00000245663|ZBTB46 ENSG00000130584|ENST00000245663|ZBTB46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7677001953125 2 568.764994 1135.51544 NaN NaN NaN NaN NaN NaN NaN 100.69 1 100.55 100.05 101.05 -0.13293 0 0 0 0.40102 1 54957 54957 31.268 7.2478 1 58147 4227 38794 39675 67831 67831 -0.046901471689125174 SFSAMHQCIL 10 Unmodified _SFSAMHQCIL_ 0 0 0 ENSG00000130584|ENST00000245663|ZBTB46 ENSG00000130584|ENST00000245663|ZBTB46 ENSG00000130584|ENST00000245663|ZBTB46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7654418945312 2 568.764994 1135.51544 1.0745 0.00061112 1.1655 0.00066287 2.2399 0.001274 568.7651783393538 101.35 0.10413 95.172 95.107 95.211 -6.1757 13 5 3 0 0 0 0.40136 1 68001 68001 21.537 3.3906 1 67027000 58148 4227 38794 39675 67832 67832 -0.046901471689125174 SFSDVETHF 9 Unmodified _SFSDVETHF_ 0 0 0 nc|ENSG00000285253|Q6N043-2|ZNF280D;ENSG00000137871|ENST00000267807|ZNF280D;nc|ENSG00000285253|Q6N043-4|ZNF280D;ENST00000560121.1_1_15:56958875-56971015:-|nuORF;nc|ENSG00000285253|Q6N043-3|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D nc|ENSG00000285253|Q6N043-2|ZNF280D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7347412109375 2 534.735271 1067.45599 0.37912 0.00020273 0.069179 3.6992E-05 0.4483 0.00023972 534.7349436765428 46.756 0.18767 46.756 46.631 46.819 0 21 8 3 0 0 0 0.019303 1 25557 25557 64.236 39.562 1 3628400 58149 4985 38795 39676 67833 67833 -0.07504003587109764 SFSEAHSEF 9 Unmodified _SFSEAHSEF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7189331054688 2 520.719621 1039.42469 -1.0011 -0.0005213 -0.14115 -7.3501E-05 -1.1423 -0.0005948 520.7195413100228 32.477 0.18719 32.477 32.374 32.561 0 21 12 2 0 0 0 0.019303 1 16959 16959 64.236 37.353 1 11123000 58150 7562 38796 39677 67834 67834 -0.09344576621174383 SFSEAHSEF 9 Unmodified _SFSEAHSEF_ 0 0 0 ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF ENST00000471856.1_1_1:146649692-146651075:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 520.719621 1039.42469 1.035 0.00053893 -0.709 -0.00036919 0.32598 0.00016974 520.7191076441173 36.851 0.25971 32.568 32.422 32.682 -4.2835 0.045563 -0.00050688 NaN 64.236 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 6698300 58151 7562 38796 39677 -0.09344576621174383 SFSEVTSYGF 10 Unmodified _SFSEVTSYGF_ 0 0 0 ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.2485961914062 2 562.250754 1122.48696 NaN NaN NaN NaN NaN NaN NaN 36.869 1 36.891 36.391 37.391 0.021545 0 0 0 0.98914 1 19549 19549 1.8442 0 1 58152 2828 38797 39678 67835 67835 -0.06938850272854324 SFSEWKTEF 9 Unmodified _SFSEWKTEF_ 0 0 0 ENST00000434935.6_1_16:71319389-71319458:-|nuORF ENST00000434935.6_1_16:71319389-71319458:-|nuORF ENST00000434935.6_1_16:71319389-71319458:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7658081054688 2 580.766571 1159.51859 0.43559 0.00025298 -1.6794 -0.00097536 -1.2438 -0.00072238 580.7656845793487 90.844 0.229 90.349 90.299 90.528 -0.49458 24 19 2 0 0 0 0.5029 1 49667 49667 7.2892 0.56607 1 1487800 58153 13306 38798 39679 67836 67836 -0.05478857518892255 SFSGEVLF 8 Unmodified _SFSGEVLF_ 0 0 0 ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2 ENSG00000268235|ENST00000622971|TCP11X1 ENSG00000268235|ENST00000622971|TCP11X1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2218017578125 2 443.221268 884.427984 0.090254 4.0002E-05 1.0464 0.00046379 1.1367 0.00050379 443.22170733275595 51.31 0.27427 51.256 51.127 51.401 -0.053871 24 13 2 0 0 0 0.67481 1 27754 27754 19.439 0 1 5080100 58154 10517 38799 39680 67837 67837 -0.018852817765150576 SFSGWRESC 9 Unmodified _SFSGWRESC_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7219848632812 2 529.721641 1057.42873 0.36749 0.00019467 2.8167 0.001492 3.1841 0.0016867 529.7216650724586 76.086 0.52521 76.086 75.894 76.419 0 70 22 5 0 0 0 0.50598 1 42342 42342 3.5965 0 1 5248100 + 58155 17022 38800 39681 67838 67838 -0.09768810399100403 SFSGWRESC 9 Unmodified _SFSGWRESC_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7232666015625 2 529.721641 1057.42873 -0.057396 -3.0404E-05 0.72357 0.00038329 0.66618 0.00035289 529.721882294798 76.554 0.53122 76.074 75.812 76.343 -0.47945 61 31 2 0 0 0 0.57757 1 42047 42047 2.0598 0 1 15596000 + 58156 17022 38800 39681 67839 67839 -0.09768810399100403 SFSHFPSFF 9 Unmodified _SFSHFPSFF_ 0 0 0 REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF REV__ENST00000428931.5_1_1:154242855-154243155:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.2958984375 2 551.753267 1101.49198 0.84563 0.00046658 0.65974 0.00036401 1.5054 0.00083059 551.7531771961918 58.301 0.38964 52.227 52.031 52.421 -6.0745 47 20 3 0 0 0 0.18521 1 37409 37409 16.942 2.104 1 23421000 + 58157 26946 38801 39682 67840 67840 -0.05470501619561219 SFSHSIQNSF 10 Unmodified _SFSHSIQNSF_ 0 0 0 nc|ENSG00000107771|Q9H7U1|CCSER2;ENSG00000107771|ENST00000372088|CCSER2;nc|ENSG00000107771|Q9H7U1-2|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 nc|ENSG00000107771|Q9H7U1|CCSER2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2653198242188 2 577.26727 1152.51999 NaN NaN NaN NaN NaN NaN NaN 37.085 1 37.085 36.585 37.585 0 0 0 0 0.59691 1 19705 19705 21.537 1.0834 1 58158 2516 38802 39683 67841 67841 -0.050172234301498975 SFSHWWTL 8 Unmodified _SFSHWWTL_ 0 0 0 REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF REV__ENST00000584911.1_1_6:166362229-166362403:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2540893554688 2 532.253434 1062.49232 NaN NaN NaN NaN NaN NaN NaN 94.378 1 94.378 93.878 94.878 0 0 0 0 0.97444 1 52169 52169 0.69038 0 1 + 58159 29085 38803 39684 67842 67842 -0.03643081899713252 SFSKAREEEIT 11 Unmodified _SFSKAREEEIT_ 0 0 0 ENSG00000187997|ENST00000340363|C17orf99 ENSG00000187997|ENST00000340363|C17orf99 ENSG00000187997|ENST00000340363|C17orf99 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8852844238281 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 70.172 1 70.207 69.707 70.707 0.035515 0 0 0 0.94181 1 38617 38617 1.2148 0 1 58160 9616 38804 39685 67843 67843 -0.0002474436994361895 SFSLYMQRGM 10 Unmodified _SFSLYMQRGM_ 0 0 0 REV__ENST00000371871.8_1_1:47838675-47842417:+|nuORF REV__ENST00000371871.8_1_1:47838675-47842417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.1912231445312 3 407.19146 1218.55255 0.61726 0.00025134 -2.6362 -0.0010734 -2.0189 -0.00082209 407.19070840977906 28.885 0.13685 28.823 28.763 28.9 -0.062159 7 5 2 0 0 0 0.69385 1 14943 14943 3.5871 1.0886 1 1503000 + 58161 26099 38805 39686 67844 67844 -0.047984756231699066 SFSMYCML 8 Unmodified _SFSMYCML_ 0 0 0 ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 ENSG00000067113|ENST00000307259|PLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.198974609375 2 491.197567 980.380582 0.82076 0.00040315 1.0916 0.0005362 1.9124 0.00093935 491.19790305582706 75.246 0.57965 69.071 68.72 69.3 -6.1757 47 31 2 0 0 0 0.78849 1 49120 49120 9.3474 0 1 15647000 58162 948 38806 39687 67845 67845 -0.11039343635047771 SFSNGVFG 8 Unmodified _SFSNGVFG_ 0 0 0 nc|ENSG00000005469|Q9UKG9-3|CROT;ENSG00000005469|ENST00000331536|CROT;ENST00000479014.1_1_7:87005212-87011518:+|nuORF nc|ENSG00000005469|Q9UKG9-3|CROT;ENST00000479014.1_1_7:87005212-87011518:+|nuORF nc|ENSG00000005469|Q9UKG9-3|CROT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.6895751953125 2 407.690136 813.365718 0.28641 0.00011676 -0.54356 -0.0002216 -0.25716 -0.00010484 407.6898221595846 53.509 0.27859 53.509 53.327 53.606 0 20 12 2 0 0 0 0.80143 1 29640 29640 5.7604 0 1 2933500 58163 309;14030 38807 39688 67846 67846 -0.04843008124851167 SFSNLLYRQLS 11 Unmodified _SFSNLLYRQLS_ 0 0 0 REV__ENST00000546733.1_1_12:94544628-94580325:+|nuORF REV__ENST00000546733.1_1_12:94544628-94580325:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 664.0201416015625 2 664.353877 1326.6932 NaN NaN NaN NaN NaN NaN NaN 76.746 1 70.571 70.071 71.071 -6.1757 0 0 0 0.81193 1 50199 50199 11.495 2.1116 1 + 58164 28664 38808 39689 67847 67847 0.04292142626286477 SFSPKTYSF 9 Unmodified _SFSPKTYSF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.759765625 2 532.258382 1062.50221 0.59495 0.00031667 -0.72747 -0.0003872 -0.13252 -7.0536E-05 532.2580579110598 47.448 0.36826 47.096 46.919 47.287 -0.3526 39 17 3 0 0 0 0.078314 1 25392 25392 38.176 9.094 1 9348400 58165 445 38809 39690 67848 67848 -0.026539386850117808 SFSPKTYSF 9 Unmodified _SFSPKTYSF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.759521484375 2 532.258382 1062.50221 1.0115 0.00053835 -1.3245 -0.00070497 -0.31304 -0.00016662 532.2575674336877 47.117 0.34424 47.084 46.898 47.242 -0.033417 37 17 3 0 0 0 0.040683 1 25361 25361 49.554 13.427 1 14264000 58166 445 38809 39690 67849 67849 -0.026539386850117808 SFSPKTYSF 9 Unmodified _SFSPKTYSF_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2571411132812 2 532.258382 1062.50221 0.95107 0.00050621 -0.90028 -0.00047918 0.050786 2.7032E-05 532.2582684341836 52.674 0.51979 46.94 46.635 47.155 -5.7345 57 28 3 0 0 0 0.040683 2 33217 33217;33344 49.554 20.473 1 81452000 58167 445 38809 39690 67850;67851 67850 -0.026539386850117808 SFSRDEKRF 9 Unmodified _SFSRDEKRF_ 0 0 0 REV__ENSG00000162598|ENST00000371201|C1orf87 REV__ENSG00000162598|ENST00000371201|C1orf87 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.1753234863281 3 391.2 1170.57817 0.029539 1.1556E-05 1.9179 0.00075029 1.9475 0.00076184 391.2006132340146 38.548 0.18492 38.565 38.46 38.645 0.01704 13 8 2 0 0 0 0.21493 1 20532 20532 4.897 1.0207 1 1669300 + 58168 21661 38810 39691 67852 67852 -0.00029541784874709265 SFSRGFCAER 10 Unmodified _SFSRGFCAER_ 0 0 0 ENST00000469214.2_1_1:193029070-193029313:+|nuORF ENST00000469214.2_1_1:193029070-193029313:+|nuORF ENST00000469214.2_1_1:193029070-193029313:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.229736328125 3 387.181952 1158.52403 -0.86257 -0.00033397 1.081 0.00041855 0.21844 8.4578E-05 387.18209868364744 30.412 0.21896 30.412 30.305 30.524 0 18 10 2 0 0 0 0.23609 1 15791 15791 5.4027 1.2132 1 4479200 58169 13828 38811 39692 67853 67853 -0.04889457208082604 SFSRGFCAER 10 Unmodified _SFSRGFCAER_ 0 0 0 ENST00000469214.2_1_1:193029070-193029313:+|nuORF ENST00000469214.2_1_1:193029070-193029313:+|nuORF ENST00000469214.2_1_1:193029070-193029313:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 387.181952 1158.52403 1.166 0.00045145 0.80374 0.00031119 1.9697 0.00076264 387.1821985240866 34.452 0.41245 30.357 30.106 30.518 -4.0951 -0.027749 -0.00010189 NaN 5.4027 43 23 2 NaN NaN NaN NaN 0 NaN NaN 0 40609000 58170 13828 38811 39692 -0.04889457208082604 SFSRVGSSNF 10 Unmodified _SFSRVGSSNF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.261474609375 2 544.261988 1086.50942 -0.49409 -0.00026892 0.25913 0.00014103 -0.23496 -0.00012788 544.261986299305 34.552 0.2974 34.36 34.2 34.497 -0.19132 43 13 5 0 0 0 0.0065755 1 18021 18021 93.938 52.098 1 80584000 + 58171 165 38812 39693 67854 67854 -0.030372060845593296 SFSRVGSSNF 10 Unmodified _SFSRVGSSNF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2623901367188 2 544.261988 1086.50942 0.14248 7.7548E-05 0.019687 1.0715E-05 0.16217 8.8262E-05 544.2619431811163 34.275 0.31252 34.303 34.143 34.456 0.027401 40 14 4 0 0 0 0.020109 1 18039 18039 75.571 41.169 1 37690000 + 58172 165 38812 39693 67855 67855 -0.030372060845593296 SFSRVGSSNF 10 Unmodified _SFSRVGSSNF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2622680664062 2 544.261988 1086.50942 0.64841 0.0003529 -0.19358 -0.00010536 0.45482 0.00024754 544.2614887509791 39.021 0.50883 34.57 34.316 34.825 -4.4509 83 32 3 0 0 0 0.01173 2 22989 22989;23119 84.522 40.664 1 60050000 + 58173 165 38812 39693 67856;67857 67856 -0.030372060845593296 SFSSFDLSNPF 11 Unmodified _SFSSFDLSNPF_ 0 0 0 ENSG00000170871|ENST00000307659|KIAA0232 ENSG00000170871|ENST00000307659|KIAA0232 ENSG00000170871|ENST00000307659|KIAA0232 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.283447265625 2 624.282586 1246.55062 0.37298 0.00023284 3.3883 0.0021152 3.7613 0.0023481 624.2843280045404 68.449 0.17651 67.969 67.877 68.053 -0.48071 13 7 2 0 0 0 0.65846 1 37425 37425 8.1555 2.8586 1 1053700 58174 8035 38813 39694 67858 67858 -0.06279489835787899 SFSSGRGWLGF 11 Unmodified _SFSSGRGWLGF_ 0 0 0 REV__ENSG00000204613|ENST00000449742|TRIM10 REV__ENSG00000204613|ENST00000449742|TRIM10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8644104003906 3 400.864729 1199.57236 NaN NaN NaN NaN NaN NaN NaN 56.635 1 56.566 56.066 57.066 -0.068737 0 0 0 0.88164 1 30812 30812 4.1166 0 1 + 58175 24189 38814 39695 67859 67859 -0.0194464029655137 SFSSHSGVYLL 11 Unmodified _SFSSHSGVYLL_ 0 0 0 REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5355834960938 3 399.536389 1195.58734 0.043833 1.7513E-05 -1.5992 -0.00063893 -1.5553 -0.00062142 399.87017657196594 31.947 0.24123 31.818 31.699 31.94 -0.12915 15 9 2 0 0 0 0.70701 1 16634 16634 1.4551 0.26178 1 1623700 + 58176 27093 38815 39696 67860 67860 -0.0026319321918890637 SFSSHSGVYLL 11 Unmodified _SFSSHSGVYLL_ 0 0 0 REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.536389 1195.58734 0.043833 1.7513E-05 -1.5992 -0.00063893 -1.5553 -0.00062142 399.87017657196594 31.947 0.24123 31.818 31.699 31.94 -0.12915 0 0 NaN 1.4551 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1623700 + 58177 27093 38815 39696 -0.0026319321918890637 SFSSSAGPGLL 11 Unmodified _SFSSSAGPGLL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7605895996094 2 511.761289 1021.50803 NaN NaN NaN NaN NaN NaN NaN 60.949 1 60.46 59.96 60.96 -0.48932 0 0 0 0.84159 1 33196 33196 10.074 0.72649 1 + 58178 199 38816 39697 67861 67861 -0.0018684017331906944 SFSSVRVETPL 11 Unmodified _SFSSVRVETPL_ 0 0 0 ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20757788-20760378:-|nuORF ENSG00000136319|ENST00000258821|TTC5 ENSG00000136319|ENST00000258821|TTC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.3278198242188 2 611.327328 1220.6401 NaN NaN NaN NaN NaN NaN NaN 47.956 1 47.603 47.103 48.103 -0.3526 0 0 0 0.83999 1 25719 25719 10.151 0 1 58179 4815 38817 39698 67862 67862 0.03860764843625475 SFSSVRVETPL 11 Unmodified _SFSSVRVETPL_ 0 0 0 ENSG00000136319|ENST00000258821|TTC5;ENST00000554157.5_1_14:20757788-20760378:-|nuORF ENSG00000136319|ENST00000258821|TTC5 ENSG00000136319|ENST00000258821|TTC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3298950195312 2 611.327328 1220.6401 0.75398 0.00046093 0.29618 0.00018107 1.0502 0.00064199 611.3278161262775 47.642 0.33213 47.603 47.411 47.743 -0.038643 21 15 2 0 0 0 0.46131 1 25688 25688 18.373 0 1 3085500 58180 4815 38817 39698 67863 67863 0.03860764843625475 SFSTALYG 8 Unmodified _SFSTALYG_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000132549|Q7Z7G8-6|VPS13B ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2217102050781 2 423.205618 844.396684 NaN NaN NaN NaN NaN NaN NaN 0.019883 1 -0.0021819 -0.50218 0.49782 -0.022065 0 0 0 0.97444 1 9 9 0.79363 0 1 58181 4211;16193;16049 38818 39699 67864 67864 -0.03173854810620469 SFSTHFCKAFK 11 Unmodified _SFSTHFCKAFK_ 0 0 0 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 REV__nc|ENSG00000122483|Q5T9S5|CCDC18 MSMS AL20221201_MKP_PDAC_01 4 434.8822021484375 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 16.637 1 14.08 13.58 14.58 -2.557 0 0 0 0.94165 1 8633 8633 0.45452 0.046251 1 + 58182 19346 38819 39700 67865 67865 -0.01606853963062349 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1818237304688 3 361.181946 1080.52401 -0.43383 -0.00015669 -0.20031 -7.2347E-05 -0.63414 -0.00022904 361.18190246871 29.613 0.21381 29.613 29.508 29.722 0 51 14 5 0 0 0 0.085319 1 15310 15310 34.222 25.245 1 62737000 58183 4659 38820 39701 67866 67866 -0.01303133936426093 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2680053710938 2 541.269281 1080.52401 -0.2854 -0.00015448 -0.83388 -0.00045136 -1.1193 -0.00060584 541.2688885468156 29.613 0.21381 29.613 29.508 29.722 0 22 14 2 0 0 0 0.037253 1 15322 15322 51.415 26.016 1 8959700 58184 4659 38820 39701 67867 67867 -0.01303133936426093 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1826782226562 3 361.181946 1080.52401 0.61521 0.0002222 -0.0072336 -2.6127E-06 0.60798 0.00021959 361.1819273726897 29.527 0.22886 29.447 29.346 29.575 -0.080429 34 14 4 0 0 0 0.05483 1 15277 15277 40.725 27.852 1 51367000 58185 4659 38820 39701 67868 67868 -0.01303133936426093 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7713012695312 2 541.269281 1080.52401 0.45807 0.00024794 -0.51734 -0.00028002 -0.059276 -3.2084E-05 541.2684935674743 29.523 0.19365 29.442 29.382 29.575 -0.080431 16 11 3 0 0 0 0.033587 1 15318 15318 53.404 28.005 1 8388300 58186 4659 38820 39701 67869 67869 -0.01303133936426093 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1824340820312 3 361.181946 1080.52401 1.1541 0.00041685 -0.082809 -2.9909E-05 1.0713 0.00038694 361.181926951704 32.968 0.46662 29.111 28.854 29.321 -3.8562 100 29 4 0 0 0 0.036857 2 18746 18746;18881 40.725 27.11 1 469290000 58187 4659 38820 39701 67870;67871 67870 -0.01303133936426093 SFSTVHEKF 9 Unmodified _SFSTVHEKF_ 0 0 0 nc|ENSG00000134987|Q8NI36|WDR36;ENSG00000134987|ENST00000513710|WDR36;ENST00000505303.5_1_5:110428043-110447004:+|nuORF nc|ENSG00000134987|Q8NI36|WDR36 nc|ENSG00000134987|Q8NI36|WDR36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2693481445312 2 541.269281 1080.52401 0.35984 0.00019477 0.10672 5.7764E-05 0.46656 0.00025253 541.2693199250077 32.961 0.6296 29.105 28.652 29.281 -3.8562 87 36 3 0 0 0 0.011291 2 18902 18773;18902 76.825 36.867 1 118510000 58188 4659 38820 39701 67872;67873 67873 -0.01303133936426093 SFSVFNVSF 9 Unmodified _SFSVFNVSF_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.254638671875 2 517.2531 1032.49165 0.47794 0.00024722 0.29755 0.00015391 0.77549 0.00040113 517.2529288068072 48.243 0.25977 48.205 48.066 48.326 -0.038643 19 12 2 0 0 0 0.15471 1 25998 25998 27.629 0.74515 1 1808600 58189 15924 38821 39702 67874 67874 -0.023299213394238905 SFSVFNVSF 9 Unmodified _SFSVFNVSF_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 517.2531 1032.49165 0.30429 0.00015739 -0.12955 -6.7008E-05 0.17474 9.0386E-05 517.252799354042 48.534 0.11852 48.163 48.081 48.2 -0.37172 0.083747 -9.1009E-05 NaN 27.629 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2061100 58190 15924 38821 39702 -0.023299213394238905 SFSVFNVSF 9 Unmodified _SFSVFNVSF_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.2531 1032.49165 0.47794 0.00024722 0.29755 0.00015391 0.77549 0.00040113 517.2529288068072 48.243 0.25977 48.205 48.066 48.326 -0.038643 0.12573 0.00035083 NaN 27.629 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1808600 58191 15924 38821 39702 -0.023299213394238905 SFSVFNVSF 9 Unmodified _SFSVFNVSF_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|417|3|anti-sense MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 517.2531 1032.49165 1.2259 0.00063408 -0.39701 -0.00020536 0.82884 0.00042872 517.2523179206564 53.674 0.29319 47.869 47.759 48.052 -5.8042 -0.20948 -0.0003677 NaN 27.629 30 18 2 NaN NaN NaN NaN 0 NaN NaN 0 20490000 58192 15924 38821 39702 -0.023299213394238905 SFTCRIWQF 9 Unmodified _SFTCRIWQF_ 0 0 0 nc|ENSG00000142330|Q9HC96-6|CAPN10;nc|ENSG00000142330|Q9HC96-5|CAPN10;nc|ENSG00000142330|Q9HC96-4|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;nc|ENSG00000142330|Q9HC96-2|CAPN10;ENSG00000142330|ENST00000391984|CAPN10 nc|ENSG00000142330|Q9HC96-6|CAPN10 nc|ENSG00000142330|Q9HC96-6|CAPN10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2883911132812 2 594.286951 1186.55935 NaN NaN NaN NaN NaN NaN NaN 41.042 1 41.042 40.542 41.542 0 0 0 0 0.25233 1 22102 22102 27.629 0.74515 1 58193 5410 38822 39703 67875 67875 -0.026467946802767983 SFTDISIYL 9 Unmodified _SFTDISIYL_ 0 0 0 ENST00000296257.9_1_3:185347643-185347886:+|nuORF ENST00000296257.9_1_3:185347643-185347886:+|nuORF ENST00000296257.9_1_3:185347643-185347886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7738647460938 2 529.773865 1057.53318 0.32028 0.00016968 -0.56929 -0.0003016 -0.24901 -0.00013192 529.77379134615 64.683 0.24438 64.683 64.587 64.831 0 14 11 2 0 0 0 0.28047 1 36062 36062 18.135 0 1 938580 58194 11508 38823 39704 67876 67876 0.006712146292329635 SFTKTSPNF 9 Unmodified _SFTKTSPNF_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7564086914062 2 514.756007 1027.49746 -0.32072 -0.00016509 1.0229 0.00052653 0.70216 0.00036144 514.7564185017553 33.872 0.17752 33.68 33.541 33.718 -0.19131 10 6 2 0 0 0 0.14 1 17670 17670 29.082 14.5 1 847970 58195 8636 38824 39705 67877 67877 -0.01518822827756594 SFTLKSKEF 9 Unmodified _SFTLKSKEF_ 0 0 0 REV__nc|ENSG00000110958|Q15185-2|PTGES3 REV__nc|ENSG00000110958|Q15185-2|PTGES3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7963256835938 2 543.795132 1085.57571 0.39778 0.00021631 0.092382 5.0237E-05 0.49016 0.00026655 543.7951924888471 82.343 0.24725 81.848 81.742 81.989 -0.4952 15 9 2 0 0 0 0.43463 1 45129 45129 10.824 4.1008 1 890940 + 58196 18732 38825 39706 67878 67878 0.036346097574551095 SFTMANNLPM 10 Unmodified _SFTMANNLPM_ 0 0 0 nc|ENSG00000007372|P26367|PAX6;ENSG00000007372|ENST00000640368|PAX6;chr11:31811015-31817809|126|10.42|0.6|4.11|-|ENST00000638914|PAX6,PAX6 nc|ENSG00000007372|P26367|PAX6 nc|ENSG00000007372|P26367|PAX6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.287109375 2 563.257002 1124.49945 0.12509 7.0456E-05 -0.18504 -0.00010423 -0.059955 -3.377E-05 563.2562573179952 43.569 0.16686 43.569 43.438 43.605 0 10 7 2 0 0 0 0.23325 1 23642 23642 10.074 0 1 4272400 58197 70 38826 39707 67879 67879 -0.05781853405824222 SFTMLHCI 8 Unmodified _SFTMLHCI_ 0 0 0 REV__ENST00000507425.5_1_4:16181029-16193070:-|nuORF REV__ENST00000507425.5_1_4:16181029-16193070:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2256164550781 2 476.224974 950.435394 0.92976 0.00044278 0.43408 0.00020672 1.3638 0.0006495 476.2253019135649 32.114 0.3876 28.418 28.19 28.578 -3.6958 39 21 2 0 0 0 0.5284 1 18167 18167 32.117 1.8922 1 32290000 + 58198 28103 38827 39708 67880 67880 -0.04180588772123883 SFTQKSHLF 9 Unmodified _SFTQKSHLF_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.525634765625 3 365.525825 1093.55564 -0.39271 -0.00014355 0.86142 0.00031487 0.46871 0.00017132 365.52586071991226 35.381 0.24445 35.159 35.001 35.245 -0.2224 26 10 3 0 0 0 0.14 1 18520 18520 21.59 15.398 1 4360600 58199 2330 38828 39709 67881 67881 0.012608588174998658 SFTQKSHLF 9 Unmodified _SFTQKSHLF_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7868041992188 2 547.785099 1093.55564 NaN NaN NaN NaN NaN NaN NaN 35.38 1 35.157 34.657 35.657 -0.2224 0 0 0 0.083082 1 18524 18524 47.749 15.632 1 58200 2330 38828 39709 67882 67882 0.012608588174998658 SFTQKSHLF 9 Unmodified _SFTQKSHLF_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7852783203125 2 547.785099 1093.55564 0.012523 6.8599E-06 1.1104 0.00060827 1.1229 0.00061512 547.7848423416522 35.127 0.23495 35.154 35.018 35.253 0.027401 22 10 3 0 0 0 0.0087923 1 18529 18529 103.42 61.325 1 4959000 58201 2330 38828 39709 67883 67883 0.012608588174998658 SFTQKSHLF 9 Unmodified _SFTQKSHLF_ 0 0 0 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 ENSG00000105497|ENST00000262259|ZNF175 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.52490234375 3 365.525825 1093.55564 NaN NaN NaN NaN NaN NaN NaN 35.109 1 35.136 34.636 35.636 0.027401 0 0 0 0.18753 1 18539 18539 36.506 17.144 1 58202 2330 38828 39709 67884 67884 0.012608588174998658 SFTSQYGCCQ 10 Unmodified _SFTSQYGCCQ_ 0 0 0 REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2124633789062 2 562.212792 1122.41103 0.86954 0.00048887 -2.5177 -0.0014155 -1.6482 -0.00092663 562.2112446713028 73.491 0.25027 73.015 72.894 73.144 -0.47588 18 10 2 0 0 0 0.66569 1 40235 40235 6.7232 0.96273 1 627440 + 58203 27098 38829 39710 67885 67885 -0.1452789371628569 SFTSQYGCCQ 10 Unmodified _SFTSQYGCCQ_ 0 0 0 REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 562.212792 1122.41103 0.61815 0.00034753 -0.86401 -0.00048576 -0.24586 -0.00013823 562.2120381530859 73.011 0.10324 73.011 72.925 73.028 0 -0.0020889 0.001543 NaN 6.7232 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 238470 + 58204 27098 38829 39710 -0.1452789371628569 SFTSQYGCCQ 10 Unmodified _SFTSQYGCCQ_ 0 0 0 REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF REV__ENST00000442141.5_1_2:26531500-26587785:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 562.212792 1122.41103 0.86954 0.00048887 -2.5177 -0.0014155 -1.6482 -0.00092663 562.2112446713028 73.491 0.25027 73.015 72.894 73.144 -0.47588 0.0020889 -0.00031653 NaN 6.7232 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 627440 + 58205 27098 38829 39710 -0.1452789371628569 SFTSTNYT 8 Unmodified _SFTSTNYT_ 0 0 0 ENSG00000225614|ENST00000565624|ZNF469 ENSG00000225614|ENST00000565624|ZNF469 ENSG00000225614|ENST00000565624|ZNF469 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7041015625 2 460.70344 919.392327 0.5728 0.00026389 0.23824 0.00010976 0.81104 0.00037365 460.7035603233659 44.014 0.47985 39.249 38.95 39.43 -4.7648 75 30 3 0 0 0 0.76266 1 26922 26922 11.64 3.047 1 68004000 58206 10584 38830 39711 67886 67886 -0.07059364024200931 SFTVKETVCP 10 Unmodified _SFTVKETVCP_ 0 0 0 ENSG00000164047|ENST00000652295|CAMP ENSG00000164047|ENST00000652295|CAMP ENSG00000164047|ENST00000652295|CAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7780151367188 2 555.778625 1109.5427 0.48314 0.00026852 -1.3893 -0.00077215 -0.90617 -0.00050363 555.7779783505773 72.363 0.33337 72.363 72.178 72.511 0 31 13 3 0 0 0 0.60623 1 40342 40342 10.824 4.1008 1 1645800 58207 7120 38831 39712 67887 67887 -0.007693403568737267 SFTVVRRGF 9 Unmodified _SFTVVRRGF_ 0 0 0 REV__ENSG00000241484|ENST00000356099|ARHGAP8 REV__ENSG00000241484|ENST00000356099|ARHGAP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8023071289062 2 534.801083 1067.58761 NaN NaN NaN NaN NaN NaN NaN 102.27 1 102.22 101.72 102.72 -0.045853 0 0 0 0.84564 1 56806 56806 2.0598 1.2661 1 + 58208 24452 38832 39713 67888 67888 0.05652271291342004 SFVDVNQSSL 10 Unmodified _SFVDVNQSSL_ 0 0 0 ENSG00000168930|ENST00000329758|TRIM49;ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B ENSG00000168930|ENST00000329758|TRIM49 ENSG00000168930|ENST00000329758|TRIM49 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2935791015625 2 548.269478 1094.5244 1.0441 0.00057247 1.0927 0.00059907 2.1368 0.0011715 548.2700011783937 94.593 0.46017 88.417 88.25 88.711 -6.1757 38 26 2 0 0 0 0.22636 1 62620 62620 17.113 0 1 6775800 58209 7817 38833 39714 67889 67889 -0.019077590072356543 SFVEGLLDQW 10 Unmodified _SFVEGLLDQW_ 0 0 0 REV__ENST00000359653.4_1_10:126673604-126673718:+|nuORF REV__ENST00000359653.4_1_10:126673604-126673718:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.53369140625 3 398.532756 1192.57644 NaN NaN NaN NaN NaN NaN NaN 22.265 1 22.281 21.781 22.781 0.015799 0 0 0 0.99091 1 11431 11431 0.69767 0 1 + 58210 25895 38834 39715 67890 67890 -0.01214595593478407 SFVFEHVWF 9 Unmodified _SFVFEHVWF_ 0 0 0 ENST00000511171.5_1_6:33748933-33749074:-|nuORF ENST00000511171.5_1_6:33748933-33749074:-|nuORF ENST00000511171.5_1_6:33748933-33749074:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.045166015625 3 399.862437 1196.56548 -0.17233 -6.8909E-05 0.46142 0.0001845 0.28909 0.0001156 399.861550002287 33.187 0.22418 33.216 33.093 33.317 0.028934 26 9 4 0 0 0 0.21874 1 17407 17407 1.1933 0 1 2083500 58211 14603 38835 39716 67891 67891 -0.024939531770996837 SFVGVPAWELY 11 Unmodified _SFVGVPAWELY_ 0 0 0 REV__ENSG00000122965|ENST00000261741|RBM19 REV__ENSG00000122965|ENST00000261741|RBM19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3220825195312 2 634.321514 1266.62847 NaN NaN NaN NaN NaN NaN NaN 66.535 1 66.535 66.035 67.035 0 0 0 0 0.76159 1 37108 37108 13.906 0 1 + 58212 19363 38836 39717 67892 67892 0.005825678202882045 SFVHGRPQ 8 Unmodified _SFVHGRPQ_ 0 0 0 nc|ENSG00000103995|O94986-3|CEP152;ENSG00000103995|ENST00000380950|CEP152 nc|ENSG00000103995|O94986-3|CEP152 nc|ENSG00000103995|O94986-3|CEP152 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.244384765625 2 464.243401 926.472249 0.18782 8.7192E-05 3.3342 0.0015479 3.522 0.0016351 464.2450236935447 29.436 0.32821 29.436 29.161 29.489 0 25 15 2 0 0 0 0.74163 1 15266 15266 13.508 4.9146 1 1198100 58213 2170 38837 39718 67893 67893 0.0060716716033084595 SFVLIFAHG 9 Unmodified _SFVLIFAHG_ 0 0 0 REV__ENSG00000176490|ENST00000323469|DIRAS1 REV__ENSG00000176490|ENST00000323469|DIRAS1 MSMS AL20221201_MKP_PDAC_01 4 495.7744140625 2 495.774003 989.533452 NaN NaN NaN NaN NaN NaN NaN 46.514 1 41.434 40.934 41.934 -5.0805 0 0 0 0.6306 1 28751 28751 11.64 3.047 1 + 58214 22934 38838 39719 67894 67894 0.038266791397632005 SFVQAAFDEF 10 Unmodified _SFVQAAFDEF_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1;REV__ENST00000443361.1_1_9:108287470-108288637:+|nuORF REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2701416015625 2 580.766571 1159.51859 0.38143 0.00022152 0.97897 0.00056855 1.3604 0.00079007 580.7666556723701 63.172 0.25453 62.686 62.562 62.816 -0.48617 27 11 3 0 0 0 0.62068 1 34439 34439 10.074 0.6908 1 2188800 + 58215 22790;27111 38839 39720 67895 67895 -0.054788575189149924 SFVQCYHEL 9 Unmodified _SFVQCYHEL_ 0 0 0 ENSG00000171126|ENST00000306078|KCNG3;nc|ENSG00000171126|Q8TAE7-2|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2552490234375 2 563.255317 1124.49608 0.2018 0.00011366 -0.11434 -6.4402E-05 0.087461 4.9263E-05 563.2551533543808 43.396 0.2242 43.396 43.262 43.486 0 21 10 3 0 0 0 0.23158 1 23548 23548 20.454 4.6064 1 4130600 58216 8066 38840 39721 67896 67896 -0.061187801881942505 SFVQGYGTF 9 Unmodified _SFVQGYGTF_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2374572753906 2 503.23745 1004.46035 -0.4385 -0.00022067 0.73228 0.00036851 0.29377 0.00014784 503.23770344556743 69.426 0.3448 68.947 68.79 69.134 -0.47903 26 14 2 0 0 0 0.39863 1 37966 37966 12.532 0.89125 1 1240500 58217 6630 38841 39722 67897 67897 -0.041704943735112465 SFVQGYGTF 9 Unmodified _SFVQGYGTF_ 0 0 0 nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A nc|ENSG00000159164|Q7L0J3-2|SV2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.23745 1004.46035 0.64242 0.00032329 0.21284 0.00010711 0.85526 0.0004304 503.2375267496833 68.922 0.20537 68.947 68.84 69.045 0.025146 5.3025E-05 -0.00028857 NaN 12.532 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1405600 58218 6630 38841 39722 -0.041704943735112465 SFVQLDKEF 9 Unmodified _SFVQLDKEF_ 0 0 0 REV__nc|ENSG00000186088|A4D1B5-3|GSAP REV__nc|ENSG00000186088|A4D1B5-3|GSAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8045043945312 2 556.784764 1111.55498 0.95622 0.00053241 -2.5559 -0.0014231 -1.5997 -0.00089068 556.7804998175145 81.41 0.56918 80.917 80.695 81.264 -0.49247 54 21 4 0 0 0 0.17275 1 44735 44735 21.747 2.4897 1 2440900 + 58219 23549 38842 39723 67898 67898 0.0036601937779323634 SFVREAATY 9 Unmodified _SFVREAATY_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.261962890625 2 522.261456 1042.50836 -0.23161 -0.00012096 1.4599 0.00076242 1.2282 0.00064146 522.2621134903169 34.68 0.17656 34.68 34.597 34.773 0 15 8 2 0 0 0 0.1773 1 18297 18297 25.399 1.3787 1 2271600 + 58220 23082 38843 39724 67899 67899 -0.011194204534831442 SFVTKRKF 8 Unmodified _SFVTKRKF_ 0 0 0 REV__ENST00000360409.7_1_2:206547732-206547855:+|nuORF REV__ENST00000360409.7_1_2:206547732-206547855:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8021850585938 2 506.800552 1011.58655 NaN NaN NaN NaN NaN NaN NaN 40.575 1 40.58 40.08 41.08 0.0050545 0 0 0 0.95607 1 21641 21641 9.3474 2.9933 1 + 58221 25910 38844 39725 67900 67900 0.08122056922422871 SFVVKQEF 8 Unmodified _SFVVKQEF_ 0 0 0 REV__ENSG00000275023|ENST00000621332|MLLT6 REV__ENSG00000275023|ENST00000621332|MLLT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2639770507812 2 492.263468 982.512382 0.56071 0.00027602 0.49884 0.00024556 1.0596 0.00052158 492.2637906810366 49.035 0.25843 48.663 48.519 48.778 -0.37172 23 12 2 0 0 0 0.52622 1 26318 26318 32.305 3.8186 1 6192300 + 58222 24645 38845 39726 67901 67901 0.02042669040235978 SFVVKQEF 8 Unmodified _SFVVKQEF_ 0 0 0 REV__ENSG00000275023|ENST00000621332|MLLT6 REV__ENSG00000275023|ENST00000621332|MLLT6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 492.263468 982.512382 0.56071 0.00027602 0.49884 0.00024556 1.0596 0.00052158 492.2637906810366 49.035 0.25843 48.663 48.519 48.778 -0.37172 -0.037381 -0.00025019 NaN 32.305 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 6192300 + 58223 24645 38845 39726 0.02042669040235978 SFVVKQEF 8 Unmodified _SFVVKQEF_ 0 0 0 REV__ENSG00000275023|ENST00000621332|MLLT6 REV__ENSG00000275023|ENST00000621332|MLLT6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.263468 982.512382 0.55348 0.00027246 -0.12884 -6.3425E-05 0.42464 0.00020903 492.2633690404201 48.742 0.17921 48.698 48.555 48.734 -0.04369 -0.0018781 -0.00086816 NaN 32.305 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1209500 + 58224 24645 38845 39726 0.02042669040235978 SFVVWSILKRM 11 Unmodified _SFVVWSILKRM_ 0 0 0 ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R ENSG00000213903|ENST00000345363|LTB4R MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.9281616210938 3 455.928564 1364.76386 0.80427 0.00036669 -1.7492 -0.0007975 -0.9449 -0.00043081 456.2623641186746 43.03 0.17034 38.266 38.18 38.35 -4.7648 14 10 2 0 0 0 0.64126 1 26110 26110 9.2438 1.7667 1 8592900 58225 10464 38846 39727 67902 67902 0.09607144410210822 SFVYNHYLF 9 Unmodified _SFVYNHYLF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7 nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.7888793945312 2 595.287474 1188.5604 0.18979 0.00011298 -0.58925 -0.00035078 -0.39947 -0.0002378 595.2872949441032 69.607 0.25178 69.638 69.554 69.806 0.030914 39 12 4 0 0 0 0.14 1 38263 38263 29.082 14.243 1 25476000 58226 9928 38847 39728 67903 67903 -0.02634257039721888 SFVYNHYLF 9 Unmodified _SFVYNHYLF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7 nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MSMS AL20221201_MKP_PDAC_01 4 595.2896728515625 2 595.287474 1188.5604 NaN NaN NaN NaN NaN NaN NaN 84.193 1 78.017 77.517 78.517 -6.1757 0 0 0 0.32177 1 55380 55380 24.021 10.978 1 58227 9928 38847 39728 67904 67904 -0.02634257039721888 SFVYNHYLF 9 Unmodified _SFVYNHYLF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENSG00000198018|ENST00000370489|ENTPD7 nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MSMS AL20221201_MKP_PDAC_01 4 595.2894897460938 2 595.287474 1188.5604 NaN NaN NaN NaN NaN NaN NaN 84.619 1 78.443 77.943 78.943 -6.1757 0 0 0 0.34649 1 55684 55684 22.736 8.8302 1 58228 9928 38847 39728 67905 67905 -0.02634257039721888 SFWCMCSTEG 10 Unmodified _SFWCMCSTEG_ 0 0 0 REV__ENST00000280557.10_1_12:123237412-123237454:+|nuORF REV__ENST00000280557.10_1_12:123237412-123237454:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1370849609375 3 384.138256 1149.39294 0.26214 0.0001007 -3.5863 -0.0013776 -3.3241 -0.0012769 384.1368724407687 50.715 0.25316 50.715 50.56 50.813 0 16 13 2 0 0 0 0.71981 1 27967 27967 0.69767 0 1 5001100 + 58229 25190 38848 39729 67906 67906 -0.17578351962629313 SFWEVFWI 8 Unmodified _SFWEVFWI_ 0 0 0 ENSG00000189050|ENST00000305783|RNFT1;ENST00000486103.6_1_17:58031378-58035783:-|nuORF ENSG00000189050|ENST00000305783|RNFT1 ENSG00000189050|ENST00000305783|RNFT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8057861328125 2 557.273835 1112.53312 1.1878 0.00066191 -1.7572 -0.00097924 -0.56944 -0.00031733 557.2734992260777 79.633 0.56324 79.144 78.943 79.507 -0.48932 31 24 2 0 0 0 8.7369 1 43672 43672 6.3541 1.1234 1 988140 58230 9725 38849 39730 67907 67907 -0.018647405800948036 SFWLFLFF 8 Unmodified _SFWLFLFF_ 0 0 0 ENST00000261254.7_1_12:4409215-4409257:+|nuORF ENST00000261254.7_1_12:4409215-4409257:+|nuORF ENST00000261254.7_1_12:4409215-4409257:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7916870117188 2 553.789121 1105.56369 NaN NaN NaN NaN NaN NaN NaN 94.676 1 94.256 93.756 94.756 -0.42044 0 0 0 0.97444 1 51722 51722 0.79363 0 1 58231 11235 38850 39731 67908 67908 0.015130378049434512 SFWPDQNSPT 10 Unmodified _SFWPDQNSPT_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39720798-39721572:-|nuORF nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5089416503906 3 393.508611 1177.504 0.029193 1.1488E-05 1.2102 0.00047622 1.2394 0.00048771 393.50908823123103 22.093 0.16529 22.107 22.017 22.182 0.013796 10 6 2 0 0 0 0.67033 1 11349 11349 3.3196 0.58445 1 1221400 58232 2065 38851 39732 67909 67909 -0.07764929667041542 SFWPIYPI 8 Unmodified _SFWPIYPI_ 0 0 0 THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|13|1|sense THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|13|1|sense THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|13|1|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7692565917969 2 511.770929 1021.5273 NaN NaN NaN NaN NaN NaN NaN 60.707 1 60.218 59.718 60.718 -0.48932 0 0 0 0.95201 1 33060 33060 10.183 0 1 58233 30189 38852 39733 67910 67910 0.01740160908229882 SFWQQRQF 8 Unmodified _SFWQQRQF_ 0 0 0 nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1 nc|ENSG00000089250|P29475-3|NOS1 nc|ENSG00000089250|P29475-3|NOS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7754516601562 2 563.775065 1125.53558 0.49161 0.00027716 0.38278 0.0002158 0.87439 0.00049296 563.7754741723057 67.258 0.37344 67.258 67.064 67.437 0 31 15 3 0 0 0 0.80143 1 37577 37577 5.7604 0.52976 1 2270900 58234 1526 38853 39734 67911 67911 -0.022168921224192673 SFWQQWQF 8 Unmodified _SFWQQWQF_ 0 0 0 NOS1|p.R1268W|1|0.32|ENSG00000089250|chr12:117225040-117225040|G/A|missense_variant NOS1|p.R1268W|1|0.32|ENSG00000089250|chr12:117225040-117225040|G/A|missense_variant NOS1|p.R1268W|1|0.32|ENSG00000089250|chr12:117225040-117225040|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7650756835938 2 578.764166 1155.51378 NaN NaN NaN NaN NaN NaN NaN 68.796 1 68.796 68.296 69.296 0 0 0 0 0.97444 1 38341 38341 2.8892 1.045 1 58235 16673 38854 39735 67912 67912 -0.05775696871000946 SFWSITSFGTF 11 Unmodified _SFWSITSFGTF_ 0 0 0 ENSG00000106328|ENST00000265825|FSCN3 ENSG00000106328|ENST00000265825|FSCN3 ENSG00000106328|ENST00000265825|FSCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2052307128906 3 427.20464 1278.59209 0.57971 0.00024765 -0.8157 -0.00034847 -0.23599 -0.00010082 427.2043027651499 40.498 0.39848 40.197 39.96 40.358 -0.30061 40 18 3 0 0 0 0.71036 1 21400 21400 1.3296 0 1 4289300 58236 2417 38855 39736 67913 67913 -0.03606309076440084 SFWVRCSRKLS 11 Unmodified _SFWVRCSRKLS_ 0 0 0 REV__ENST00000359238.6_2_17:46190750-46196415:+|nuORF REV__ENST00000359238.6_2_17:46190750-46196415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 684.86181640625 2 684.863889 1367.71322 NaN NaN NaN NaN NaN NaN NaN 101.71 1 101.66 101.16 102.16 -0.045853 0 0 0 0.94165 1 56504 56504 1.3295 0.25807 1 + 58237 25888 38856 39737 67914 67914 0.04407615085256111 SFYAERFFKF 10 Unmodified _SFYAERFFKF_ 0 0 0 nc|ENSG00000186111|O60331-3|PIP5K1C;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C nc|ENSG00000186111|O60331-3|PIP5K1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.8933410644531 3 447.892396 1340.65536 1.2098 0.00054186 0.28861 0.00012927 1.4984 0.00067112 447.89241783542394 71.522 0.27792 71.561 71.386 71.664 0.039024 30 12 3 0 0 0 0.5543 1 39358 39358 13.519 7.2843 1 2737300 58238 16461 38857 39738 67915 67915 -0.001343235685453692 SFYAWAKCDF 10 Unmodified _SFYAWAKCDF_ 0 0 0 REV__ENSG00000185010|ENST00000360256|F8 REV__ENSG00000185010|ENST00000360256|F8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2688598632812 2 619.270967 1236.52738 NaN NaN NaN NaN NaN NaN NaN 72.213 1 71.736 71.236 72.236 -0.47609 0 0 0 0.92825 1 39519 39519 6.7232 0.51738 1 + 58239 23462 38858 39739 67916 67916 -0.08142207154082826 SFYDILLNL 9 Unmodified _SFYDILLNL_ 0 0 0 REV__ENST00000460620.5_1_1:114402081-114414292:-|nuORF REV__ENST00000460620.5_1_1:114402081-114414292:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2998657226562 2 549.297507 1096.58046 2.2975 0.001262 0.92134 0.00050609 3.2189 0.0017681 549.2981202216174 96.269 0.39706 96.262 96.019 96.416 -0.0070114 29 13 3 0 0 0 0.2001 1 53533 53533 23.148 0 1 7599400 + 58240 27299 38859 39740 67917 67917 0.03603493900232024 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5111083984375 3 379.511515 1135.51272 -0.34584 -0.00013125 -0.36477 -0.00013843 -0.71061 -0.00026968 379.5114084247879 23.588 0.26601 23.588 23.448 23.714 0 40 13 4 0 0 0 0.52844 1 12083 12083 5.7319 2.7366 1 4931500 + 58241 28542 38860 39741 67918 67918 -0.049619112399113874 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5094909667969 3 379.511515 1135.51272 -0.40001 -0.00015181 -0.12478 -4.7357E-05 -0.52479 -0.00019916 379.5115292293742 24.378 0.27756 24.378 24.274 24.551 0 57 15 5 0 0 0 0.52844 1 12406 12406 5.7319 5.7319 1 35906000 + 58242 28542 38860 39741 67919 67919 -0.049619112399113874 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5107421875 3 379.511515 1135.51272 -0.64844 -0.00024609 -0.51863 -0.00019683 -1.1671 -0.00044292 379.5112771319488 27.372 0.9999 27.372 26.53 27.53 0 135 48 3 0 0 0 0.46501 1 13723 13723 9.3831 0.63772 1 13859000 + 58243 28542 38860 39741 67920 67920 -0.049619112399113874 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8455505371094 3 379.511515 1135.51272 -0.20928 -7.9425E-05 -0.79014 -0.00029987 -0.99943 -0.00037929 379.51111841767334 21.714 0.16493 21.736 21.665 21.829 0.022896 12 7 2 0 0 0 0.57331 1 11034 11034 2.9952 0.26005 1 933840 + 58244 28542 38860 39741 67921 67921 -0.049619112399113874 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 379.511515 1135.51272 -0.40537 -0.00015384 -0.26739 -0.00010148 -0.67276 -0.00025532 379.5110971033192 21.515 0.12323 21.515 21.443 21.566 0 -0.11055 0.00033247 NaN 2.9952 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 637470 + 58245 28542 38860 39741 -0.049619112399113874 SFYFFAAFH 9 Unmodified _SFYFFAAFH_ 0 0 0 REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF REV__ENST00000536896.2_1_1:26145517-26146111:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.511515 1135.51272 -0.20928 -7.9425E-05 -0.79014 -0.00029987 -0.99943 -0.00037929 379.51111841767334 21.714 0.16493 21.736 21.665 21.829 0.022896 0.11055 -0.0002627 NaN 2.9952 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 933840 + 58246 28542 38860 39741 -0.049619112399113874 SFYKPLFSASA 11 Unmodified _SFYKPLFSASA_ 0 0 0 REV__ENSG00000141580|ENST00000392325|WDR45B REV__ENSG00000141580|ENST00000392325|WDR45B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5450134277344 3 406.544885 1216.61282 0.379 0.00015408 -0.19236 -7.8205E-05 0.18664 7.5876E-05 406.87901314115817 63.635 0.30355 63.148 62.992 63.295 -0.48617 26 13 3 0 0 0 0.71341 1 34697 34697 1.2148 0.51716 1 2386100 + 58247 20547 38861 39742 67922 67922 0.01318281303247204 SFYKPLFSASA 11 Unmodified _SFYKPLFSASA_ 0 0 0 REV__ENSG00000141580|ENST00000392325|WDR45B REV__ENSG00000141580|ENST00000392325|WDR45B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 406.544885 1216.61282 0.379 0.00015408 -0.19236 -7.8205E-05 0.18664 7.5876E-05 406.87901314115817 63.635 0.30355 63.148 62.992 63.295 -0.48617 -0.027938 0.00015746 NaN 1.2148 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2386100 + 58248 20547 38861 39742 0.01318281303247204 SFYKPLFSASA 11 Unmodified _SFYKPLFSASA_ 0 0 0 REV__ENSG00000141580|ENST00000392325|WDR45B REV__ENSG00000141580|ENST00000392325|WDR45B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 406.544885 1216.61282 0.15007 6.1008E-05 -0.41602 -0.00016913 -0.26595 -0.00010812 406.5446683736063 63.226 0.1887 63.204 63.089 63.278 -0.021614 0.027938 -0.00011531 NaN 1.2148 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3052600 + 58249 20547 38861 39742 0.01318281303247204 SFYKQQATTY 10 Unmodified _SFYKQQATTY_ 0 0 0 REV__ENSG00000165186|ENST00000379361|PTCHD1 REV__ENSG00000165186|ENST00000379361|PTCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.79931640625 2 618.798403 1235.58225 1.0338 0.00063972 0.90805 0.0005619 1.9419 0.0012016 618.7990083959539 33.562 0.33552 29.577 29.507 29.842 -3.9853 29 18 2 0 0 0 0.64628 1 19305 19305 8.7454 1.4562 1 10596000 + 58250 21990 38862 39743 67923 67923 -0.026114970818071015 SFYKVNHIW 9 Unmodified _SFYKVNHIW_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.5418090820312 3 398.541586 1192.60293 0.67905 0.00027063 -0.096928 -3.863E-05 0.58212 0.000232 398.5415854313382 40.568 0.1887 40.265 40.148 40.337 -0.30304 14 8 3 0 0 0 0.49272 1 21471 21471 4.897 0 1 1722600 58251 4066 38863 39744 67924 67924 0.014331380885096223 SFYKVNHIW 9 Unmodified _SFYKVNHIW_ 0 0 0 nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 nc|ENSG00000128512|Q8N1I0-2|DOCK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5420837402344 3 398.541586 1192.60293 0.2365 9.4254E-05 0.16557 6.5987E-05 0.40207 0.00016024 398.5416862760387 40.248 0.27184 40.253 40.088 40.36 0.0050545 40 12 4 0 0 0 0.54444 1 21517 21517 2.7352 0 1 18891000 58252 4066 38863 39744 67925 67925 0.014331380885096223 SFYLEREI 8 Unmodified _SFYLEREI_ 0 0 0 ENST00000455230.5_1_2:37458781-37459291:+|nuORF ENST00000455230.5_1_2:37458781-37459291:+|nuORF ENST00000455230.5_1_2:37458781-37459291:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.772705078125 2 528.771657 1055.52876 NaN NaN NaN NaN NaN NaN NaN 78.788 1 78.788 78.288 79.288 0 0 0 0 0.97444 1 43775 43775 2.8892 0.58649 1 58253 13578 38864 39745 67926 67926 0.00321750206330762 SFYLRYAH 8 Unmodified _SFYLRYAH_ 0 0 0 REV__ENSG00000101986|ENST00000218104|ABCD1 REV__ENSG00000101986|ENST00000218104|ABCD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8463439941406 3 352.846898 1055.51886 NaN NaN NaN NaN NaN NaN NaN 21.403 1 21.431 20.931 21.931 0.028357 0 0 0 0.97444 1 10860 10860 0.45834 0 1 + 58254 18211 38865 39746 67927 67927 -0.006673930084161839 SFYPLQSHF 9 Unmodified _SFYPLQSHF_ 0 0 0 REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8500671386719 3 375.850308 1124.5291 NaN NaN NaN NaN NaN NaN NaN 15.959 1 15.959 15.459 16.459 0 0 0 0 0.84369 1 7739 7739 1.1933 0 1 + 58255 28152 38866 39747 67928 67928 -0.028188300738293037 SFYPLQSHF 9 Unmodified _SFYPLQSHF_ 0 0 0 REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF REV__ENST00000511075.5_1_4:39457912-39460059:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1842346191406 3 375.850308 1124.5291 NaN NaN NaN NaN NaN NaN NaN 16.038 1 16.038 15.538 16.538 0 0 0 0 0.84369 1 7783 7783 1.1933 0 1 + 58256 28152 38866 39747 67929 67929 -0.028188300738293037 SFYPRNITLTW 11 Unmodified _SFYPRNITLTW_ 0 0 0 nc|ENSG00000204516|Q29980-2|MICB;ENSG00000204516|ENST00000252229|MICB nc|ENSG00000204516|Q29980-2|MICB nc|ENSG00000204516|Q29980-2|MICB MSMS AL20221201_MKP_PDAC_01 4 699.3671875 2 699.364244 1396.71394 NaN NaN NaN NaN NaN NaN NaN 93.342 1 87.166 86.666 87.666 -6.1757 0 0 0 0.00039893 1 61777 61777 85.764 50.832 1 58257 10293 38867 39748 67930 67930 0.03144733005933631 SFYRQRLL 8 Unmodified _SFYRQRLL_ 0 0 0 REV__RPS6KA2|p.I498L|1|0.06|ENSG00000071242|chr6:166430542-166430542|T/G|missense_variant REV__RPS6KA2|p.I498L|1|0.06|ENSG00000071242|chr6:166430542-166430542|T/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5417785644531 3 361.541697 1081.60326 1.1275 0.00040764 0.30116 0.00010888 1.4287 0.00051652 361.54185222080343 46.428 0.19198 41.348 41.23 41.422 -5.0805 23 14 2 0 0 0 0.64853 1 28626 28626 21.747 0 1 24085000 + 58258 30094 38868 39749 67931 67931 0.06572557808362944 SFYSMDTTLL 10 Unmodified _SFYSMDTTLL_ 0 0 0 ENST00000566679.6_1_16:50776726-50783580:+|nuORF ENST00000566679.6_1_16:50776726-50783580:+|nuORF ENST00000566679.6_1_16:50776726-50783580:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5220642089844 3 393.186369 1176.53728 1.6395 0.00064461 0.88463 0.00034782 2.5241 0.00099244 393.18671597954244 33.968 0.55878 29.983 29.608 30.167 -3.9853 56 30 3 0 0 0 0.66569 1 19503 19503 3.5871 0 1 7646100 58259 15422 38869 39750 67932 67932 -0.043930639393465754 SFYTFIFLE 9 Unmodified _SFYTFIFLE_ 0 0 0 ENST00000373840.8_1_9:123942493-123942817:-|nuORF ENST00000373840.8_1_9:123942493-123942817:-|nuORF ENST00000373840.8_1_9:123942493-123942817:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7911376953125 2 583.792058 1165.56956 0.85331 0.00049815 -1.9618 -0.0011453 -1.1085 -0.00064716 583.7908115535099 80.156 0.94666 79.667 79.257 80.204 -0.48932 64 38 2 0 0 0 0.5029 1 43938 43938 7.2892 0.56607 1 854910 58260 12424 38870 39751 67933 67933 -0.00659908474040094 SFYTLSRVP 9 Unmodified _SFYTLSRVP_ 0 0 0 REV__ENST00000448009.1_1_10:65394289-65394328:-|nuORF REV__ENST00000448009.1_1_10:65394289-65394328:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.291259765625 2 535.287474 1068.5604 NaN NaN NaN NaN NaN NaN NaN 71.105 1 64.929 64.429 65.429 -6.1757 0 0 0 0.39043 1 46472 46472 20.454 3.3407 1 + 58261 19840 38871 39752 67934 67934 0.028857429603021956 SFYWIGFL 8 Unmodified _SFYWIGFL_ 0 0 0 REV__ENST00000263102.6_1_10:61552344-61552569:-|nuORF REV__ENST00000263102.6_1_10:61552344-61552569:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.78515625 2 516.763104 1031.51165 1.0509 0.00054307 2.6656 0.0013775 3.7165 0.0019205 516.7646584485249 21.817 0.21953 19.082 18.955 19.175 -2.7348 18 11 2 0 0 0 8.7369 1 11640 11640 15.768 2.7258 1 1057400 + 58262 25039 38872 39753 67935 67935 -0.0028412560880042292 SFYWNEQL 8 Unmodified _SFYWNEQL_ 0 0 0 REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF REV__ENST00000506213.1_1_5:43490704-43493698:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2532958984375 2 543.748182 1085.48181 -0.17626 -9.584E-05 0.090098 4.8991E-05 -0.086161 -4.685E-05 543.7481768668392 70.096 0.4199 69.617 69.472 69.892 -0.47903 37 22 2 0 0 0 0.80143 1 38449 38449 5.7604 0.52976 1 5387200 + 58263 28084 38873 39754 67936 67936 -0.057511093448283646 SGADAEAVVF 10 Unmodified _SGADAEAVVF_ 0 0 0 REV__nc|ENSG00000074370|Q93084-4|ATP2A3 REV__nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.233642578125 2 483.232364 964.450176 1.3043 0.00063027 -0.19473 -9.4099E-05 1.1095 0.00053617 483.2326341120709 40.925 0.57981 36.317 36.004 36.583 -4.6079 123 35 5 0 0 0 0.31022 3 24346 24346;24480;24624 26.884 1.4843 1 203660000 + 58264 17551 38874 39755 67937;67938;67939 67937 -0.033471020987576594 SGADAEAVVF 10 Unmodified _SGADAEAVVF_ 0 0 0 REV__nc|ENSG00000074370|Q93084-4|ATP2A3 REV__nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.23388671875 2 483.232364 964.450176 0.24986 0.00012074 0.62678 0.00030288 0.87664 0.00042362 483.2330942557498 41.408 0.51143 36.8 36.566 37.077 -4.6079 115 33 4 0 0 0 0.31022 3 24763 24763;24895;25034 26.884 1.4843 1 183620000 + 58265 17551 38874 39755 67940;67941;67942 67940 -0.033471020987576594 SGAFQAGMESL 11 Unmodified _SGAFQAGMESL_ 0 0 0 ENST00000462214.5_1_21:46493785-46548358:+|nuORF;ENST00000437626.5_1_21:46494558-46548358:+|nuORF ENST00000462214.5_1_21:46493785-46548358:+|nuORF ENST00000462214.5_1_21:46493785-46548358:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.50244140625 3 366.50258 1096.48591 NaN NaN NaN NaN NaN NaN NaN 16.365 1 13.808 13.308 14.308 -2.557 0 0 0 0.9372 1 8473 8473 2.084 0 1 58266 13352 38875 39756 67943 67943 -0.05847387913399871 SGCDCEENDE 10 Unmodified _SGCDCEENDE_ 0 0 0 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2690124511719 3 367.442949 1099.30702 NaN NaN NaN NaN NaN NaN NaN 18.969 1 18.975 18.475 19.475 0.0060463 0 0 0 1.0061 1 9633 9633 0 0 1 + 58267 19967 38876 39757 67944 67944 -0.23866265334459058 SGCRARGT 8 Unmodified _SGCRARGT_ 0 0 0 ENST00000526188.5_1_1:156756895-156764553:+|nuORF ENST00000526188.5_1_1:156756895-156764553:+|nuORF ENST00000526188.5_1_1:156756895-156764553:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1967163085938 2 404.198136 806.381719 NaN NaN NaN NaN NaN NaN NaN 24.595 1 24.595 24.095 25.095 0 0 0 0 0.97444 1 12575 12575 1.8442 0 1 58268 14814 38877 39758 67945 67945 -0.029216251596153597 SGCRGCSDPAP 11 Unmodified _SGCRGCSDPAP_ 0 0 0 REV__ENST00000313367.6_1_7:25019562-25019673:-|nuORF REV__ENST00000313367.6_1_7:25019562-25019673:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.211669921875 2 525.210583 1048.40661 1.0669 0.00056037 1.541 0.00080934 2.6079 0.0013697 525.2112580091372 83.623 0.39211 77.447 77.27 77.662 -6.1757 32 20 2 0 0 0 0.6889 2 54966 54966;55107 5.2969 5.2969 1 18416000 + 58269 25438 38878 39759 67946;67947 67946 -0.11565358139205273 SGDDSDKRSCE 11 Unmodified _SGDDSDKRSCE_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B;ENSG00000129250|ENST00000320785|KIF1C nc|ENSG00000054523|O60333-3|KIF1B;ENSG00000129250|ENST00000320785|KIF1C nc|ENSG00000054523|O60333-3|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7344360351562 2 599.735674 1197.45679 0.40105 0.00024052 0.25324 0.00015188 0.65428 0.0003924 599.7357421951417 97.071 0.159 96.828 96.706 96.865 -0.24277 11 6 2 0 0 0 0.7453 1 52990 52990 0 0 1 308200 58270 16032;4125 38879 39760 67948 67948 -0.1340357700032655 SGDILFAINVS 11 Unmodified _SGDILFAINVS_ 0 0 0 REV__ENSG00000100473|ENST00000396618|COCH REV__ENSG00000100473|ENST00000396618|COCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.303466796875 2 568.303321 1134.59209 0.4166 0.00023676 -0.34101 -0.0001938 0.07559 4.2958E-05 568.3030488097119 69.294 0.31999 69.294 69.103 69.423 0 24 13 2 0 0 0 0.69708 1 38655 38655 4.5289 0.33936 1 1956200 + 58271 18072 38880 39761 67949 67949 0.030176909235706262 SGDRLFFFF 9 Unmodified _SGDRLFFFF_ 0 0 0 REV__ENST00000478856.5_1_3:100067842-100068019:+|nuORF REV__ENST00000478856.5_1_3:100067842-100068019:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1912536621094 3 379.190553 1134.54983 NaN NaN NaN NaN NaN NaN NaN 77.711 1 77.229 76.729 77.729 -0.4826 0 0 0 0.84737 1 42544 42544 0.96228 0 1 + 58272 27645 38881 39762 67950 67950 -0.012062396941473708 SGDRWSRLK 9 Unmodified _SGDRWSRLK_ 0 0 0 nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.9016418457031 3 368.868473 1103.58359 0.043392 1.6006E-05 -2.2008 -0.0008118 -2.1574 -0.00079579 368.8676889818392 19.073 0.38286 19.081 18.936 19.319 0.0078506 36 22 2 0 0 0 0.20728 1 9758 9758 9.544 1.935 1 328330 58273 6275 38882 39763 67951 67951 0.03594181797620877 SGDRWSRLK 9 Unmodified _SGDRWSRLK_ 0 0 0 nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP nc|ENSG00000153820|Q2M3C7-2|SPHKAP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.868473 1103.58359 -0.55226 -0.00020371 -2.1701 -0.00080047 -2.7223 -0.0010042 368.867697823804 19.096 0.47934 19.119 18.841 19.32 0.023106 0.018943 1.4919E-05 NaN 9.544 42 29 2 NaN NaN NaN NaN 0 NaN NaN 0 557660 58274 6275 38882 39763 0.03594181797620877 SGDTTNICEY 10 Unmodified _SGDTTNICEY_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A REV__nc|ENSG00000169432|Q15858-4|SCN9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 1102.443115234375 1 1102.43573 1101.42845 0.73837 0.00081401 2.4932 0.0027485 3.2315 0.0035626 1102.43750011373 75.183 0.43893 69.007 68.72 69.159 -6.1757 34 23 2 0 0 0 0.29752 1 49176 49176 27.629 5.8822 1 11853000 + 58275 22400 38883 39764 67952 67952 -0.11820274909632644 SGEALFCFGL 10 Unmodified _SGEALFCFGL_ 0 0 0 REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF REV__ENST00000398733.7_1_5:138940889-138941081:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2818603515625 2 522.24696 1042.47937 0.43457 0.00022695 0.55134 0.00028794 0.98591 0.00051489 522.2470016169864 52.422 0.23266 51.989 51.851 52.083 -0.43367 20 11 2 0 0 0 0.22993 1 28265 28265 12.532 5.2423 1 6207700 + 58276 26569 38884 39765 67953 67953 -0.040172810741296416 SGEEKERS 8 Unmodified _SGEEKERS_ 0 0 0 REV__nc|ENSG00000110693|P35712-4|SOX6 REV__nc|ENSG00000110693|P35712-4|SOX6 MSMS AL20221201_MKP_PDAC_01 4 461.2190551757812 2 461.217246 920.419939 NaN NaN NaN NaN NaN NaN NaN 25.084 1 22.201 21.701 22.701 -2.8831 0 0 0 0.96881 1 13704 13704 6.7232 0.96273 1 + 58277 18713 38885 39766 67954 67954 -0.04345460763943265 SGEGIWVK 8 Unmodified _SGEGIWVK_ 0 0 0 REV__ENST00000582730.6_1_17:56081299-56081383:-|nuORF REV__ENST00000582730.6_1_17:56081299-56081383:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.236083984375 2 438.23471 874.454868 NaN NaN NaN NaN NaN NaN NaN 20.774 1 20.774 20.274 21.274 0 0 0 0 0.97444 1 10469 10469 2.3027 0.4585 1 + 58278 29074 38886 39767 67955 67955 0.012618268346614059 SGENDGENGDD 11 Unmodified _SGENDGENGDD_ 0 0 0 REV__ENSG00000184205|ENST00000375442|TSPYL2;REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6843872070312 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 1.5538 1 1.4805 0.98054 1.9805 -0.07329 0 0 0 0.9435 1 778 778 0 0 1 + 58279 28783;23405 38887 39768 67956 67956 -0.1905306232467865 SGENDGENGDD 11 Unmodified _SGENDGENGDD_ 0 0 0 REV__ENSG00000184205|ENST00000375442|TSPYL2;REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6856689453125 2 554.686704 1107.35885 NaN NaN NaN NaN NaN NaN NaN 2.3759 1 2.3039 1.8039 2.8039 -0.072029 0 0 0 0.9435 1 1180 1180 0 0 1 + 58280 28783;23405 38887 39768 67957 67957 -0.1905306232467865 SGESLFIALL 10 Unmodified _SGESLFIALL_ 0 0 0 nc|ENSG00000131067|Q9UJ14-5|GGT7 nc|ENSG00000131067|Q9UJ14-5|GGT7 nc|ENSG00000131067|Q9UJ14-5|GGT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2977294921875 2 525.297507 1048.58046 0.66446 0.00034904 0.19298 0.00010137 0.85744 0.00045041 525.2973869627745 81.304 0.22664 80.812 80.77 80.997 -0.49248 15 9 2 0 0 0 0.60623 1 44579 44579 10.824 0 1 453150 58281 16189 38888 39769 67958 67958 0.05811493900228015 SGFGPRTE 8 Unmodified _SGFGPRTE_ 0 0 0 REV__ENST00000371586.6_2_1:52830301-52831843:-|nuORF REV__ENST00000371586.6_2_1:52830301-52831843:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 850.4060668945312 1 850.405357 849.398081 1.4501 0.0012332 -0.57916 -0.00049252 0.87098 0.00074069 850.4056755135351 104.48 0.04673 98.301 98.267 98.313 -6.1757 7 4 2 0 0 0 0.80992 1 69969 69969 0.69038 0 1 3955600 + 58282 26087 38889 39770 67959 67959 -0.03264220721860056 SGFITAIYG 9 Unmodified _SGFITAIYG_ 0 0 0 ENSG00000221937|ENST00000408947|TAS2R40 ENSG00000221937|ENST00000408947|TAS2R40 ENSG00000221937|ENST00000408947|TAS2R40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4778442382812 1 928.47746 927.470183 0.50711 0.00047084 -0.23396 -0.00021723 0.27315 0.00025361 928.4778739799206 67.982 0.31126 67.982 67.788 68.099 0 32 15 3 0 0 0 0.55775 1 37964 37964 3.9444 0 1 1781700 58283 10562 38890 39771 67960 67960 0.003546936318457483 SGFKDLFSM 9 Oxidation (M) _SGFKDLFSM(Oxidation (M))_ SGFKDLFSM(1) SGFKDLFSM(83) 0 0 1 ENSG00000113504|ENST00000264930|SLC12A7;ENST00000514994.1_1_5:1057584-1063994:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2451782226562 2 524.244418 1046.47428 NaN NaN NaN NaN NaN NaN NaN 57.897 1 57.408 56.908 57.908 -0.48974 0 0 0 0.016974 1 31470 31470 82.529 40.69 1 58284 2971 38891 39772 67961 67961 514 -0.04709584936745159 SGFKDLFSM 9 Oxidation (M) _SGFKDLFSM(Oxidation (M))_ SGFKDLFSM(1) SGFKDLFSM(77) 0 0 1 ENSG00000113504|ENST00000264930|SLC12A7;ENST00000514994.1_1_5:1057584-1063994:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2449951171875 2 524.244418 1046.47428 0.7343 0.00038495 0.54418 0.00028528 1.2785 0.00067024 524.2447253279339 57.618 0.45598 57.552 57.359 57.815 -0.066036 56 22 3 0 0 0 0.011291 2 31418 31314;31418 76.825 34.985 1 3255500 58285 2971 38891 39772 67962;67963 67963 514 -0.04709584936745159 SGFLPCFGPSF 11 Unmodified _SGFLPCFGPSF_ 0 0 0 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant;ENSG00000249715|ENST00000624922|FER1L5 FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant FER1L5|p.P1632Lfs*15|1|0.18|ENSG00000249715|chr2:96699962-96699984|GCCCCCAAGCTACCTCCTAGAAC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7684326171875 2 579.76806 1157.52157 0.28039 0.00016256 1.1018 0.00063877 1.3822 0.00080133 579.769088101363 65.247 0.36237 64.763 64.575 64.938 -0.48428 34 16 3 0 0 0 0.63851 1 35681 35681 9.3831 1.473 1 3805000 58286 10748 38892 39773 67964 67964 -0.05089305665728716 SGFLTSNWHI 10 Unmodified _SGFLTSNWHI_ 0 0 0 REV__ENSG00000178538|ENST00000317995|CA8 REV__ENSG00000178538|ENST00000317995|CA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8614501953125 3 387.861096 1160.56146 1.4795 0.00057383 1.4131 0.0005481 2.8926 0.0011219 388.19616925397924 19.868 0.40561 17.212 17.076 17.481 -2.6564 31 24 2 0 0 0 0.54684 1 10568 10568 8.4443 4.568 1 3331600 + 58287 23048 38893 39774 67965 67965 -0.012400426708154555 SGFNVNHL 8 Unmodified _SGFNVNHL_ 0 0 0 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8;nc|ENSG00000179520|Q8NDX2-2|SLC17A8 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2225341796875 2 444.222134 886.429715 0.76953 0.00034184 1.3107 0.00058226 2.0803 0.0009241 444.22259534040165 49.975 0.35983 49.583 49.412 49.772 -0.3923 26 17 2 0 0 0 0.80143 1 26903 26903 5.7604 0.52976 1 2287500 58288 1596;2253;8839 38894 39775 67966 67966 -0.01804227967920724 SGFNVNHL 8 Unmodified _SGFNVNHL_ 0 0 0 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8;nc|ENSG00000179520|Q8NDX2-2|SLC17A8 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.222134 886.429715 0.70169 0.0003117 1.6378 0.00072755 2.3395 0.0010393 444.2227635455443 49.524 0.36391 49.524 49.352 49.716 0 -0.012336 0.00041079 NaN 5.7604 36 15 3 NaN NaN NaN NaN 0 NaN NaN 0 7691500 58289 1596;2253;8839 38894 39775 -0.01804227967920724 SGFNVNHL 8 Unmodified _SGFNVNHL_ 0 0 0 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8;nc|ENSG00000179520|Q8NDX2-2|SLC17A8 ENSG00000091664|ENST00000263160|SLC17A6;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;ENSG00000179520|ENST00000323346|SLC17A8 ENSG00000179520|ENST00000323346|SLC17A8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.222134 886.429715 0.76953 0.00034184 1.3107 0.00058226 2.0803 0.0009241 444.22259534040165 49.975 0.35983 49.583 49.412 49.772 -0.3923 0.046648 0.00012021 NaN 5.7604 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2287500 58290 1596;2253;8839 38894 39775 -0.01804227967920724 SGFWKALTF 9 Unmodified _SGFWKALTF_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7802734375 2 528.779285 1055.54402 1.2071 0.00063827 1.1941 0.0006314 2.4011 0.0012697 528.780256001464 97.937 0.16034 91.761 91.687 91.847 -6.1757 14 9 2 0 0 0 0.030186 1 64933 64933 67.838 39.351 1 12166000 58291 3962 38895 39776 67967 67967 0.01846661794161264 SGFYVMINPL 10 Unmodified _SGFYVMINPL_ 0 0 0 REV__JARID2|p.S172I|1|0.14|ENSG00000008083|chr6:15468563-15468563|G/T|missense_variant REV__JARID2|p.S172I|1|0.14|ENSG00000008083|chr6:15468563-15468563|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 570.7943725585938 2 570.791535 1139.56852 NaN NaN NaN NaN NaN NaN NaN 64.395 1 58.22 57.72 58.72 -6.1757 0 0 0 0.64375 1 41716 41716 19.257 0 1 + 58292 29394 38896 39777 67968 67968 0.004315538853916223 SGGCGDEDDCD 11 Unmodified _SGGCGDEDDCD_ 0 0 0 REV__ENSG00000179399|ENST00000377067|GPC5 REV__ENSG00000179399|ENST00000377067|GPC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.6432495117188 2 536.645136 1071.27572 NaN NaN NaN NaN NaN NaN NaN 22.523 1 22.541 22.041 23.041 0.01749 0 0 0 0.9435 1 11569 11569 0 0 1 + 58293 23097 38897 39778 67969 67969 -0.2570683836856915 SGGFPTPF 8 Unmodified _SGGFPTPF_ 0 0 0 REV__nc|ENSG00000205726|Q15811-12|ITSN1 REV__nc|ENSG00000205726|Q15811-12|ITSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.3839721679688 1 809.382831 808.375555 0.87197 0.00070576 -0.25482 -0.00020625 0.61715 0.00049951 809.3825208266837 66.845 0.27015 60.669 60.519 60.789 -6.1757 23 14 2 0 0 0 0.55032 1 43464 43464 30.225 30.225 1 11250000 + + 58294 29916 38898 39779 67970 67970 -0.03629820119465421 SGGGGGGCG 9 Unmodified _SGGGGGGCG_ 0 0 0 REV__ENSG00000156017|ENST00000376834|CARNMT1 REV__ENSG00000156017|ENST00000376834|CARNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2085571289062 1 608.2093 607.202024 -0.66685 -0.00040559 -1.791 -0.0010893 -2.4578 -0.0014949 608.2103335636103 10.579 0.086803 10.579 10.536 10.622 0 45 36 2 0 0 0 0.62242 1 5037 5037 0 0 1 199340 + 58295 21306 38899 39780 67971 67971 -0.11728929167406932 SGGPALFPAL 10 Unmodified _SGGPALFPAL_ 0 0 0 ENSG00000139800|ENST00000267294|ZIC5 ENSG00000139800|ENST00000267294|ZIC5 ENSG00000139800|ENST00000267294|ZIC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7582397460938 2 465.258185 928.501818 1.0039 0.00046706 -0.45981 -0.00021393 0.54406 0.00025313 465.25830447840184 54.745 0.29932 54.745 54.597 54.897 0 23 12 2 0 0 0 0.22149 1 30439 30439 20.454 20.454 1 8231500 58296 5190 38900 39781 67972 67972 0.034706863857991266 SGGPLLFDDL 10 Unmodified _SGGPLLFDDL_ 0 0 0 ENST00000463129.5_1_2:239096889-239102991:-|nuORF;ENSG00000132323|ENST00000254654|ILKAP ENST00000463129.5_1_2:239096889-239102991:-|nuORF ENST00000463129.5_1_2:239096889-239102991:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7459106445312 2 517.263665 1032.51278 0.49765 0.00025742 0.22702 0.00011743 0.72467 0.00037485 517.2633017619671 52.924 0.18354 52.924 52.798 52.982 0 16 8 3 0 0 0 0.22149 1 29311 29311 20.454 8.8133 1 3528200 58297 4390 38901 39782 67973 67973 -0.00217956030564892 SGGRLEAW 8 Unmodified _SGGRLEAW_ 0 0 0 ENST00000054650.8_1_1:6693303-6693336:+|nuORF ENST00000054650.8_1_1:6693303-6693336:+|nuORF ENST00000054650.8_1_1:6693303-6693336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2221374511719 2 438.222134 874.429715 -0.58568 -0.00025666 0.45264 0.00019836 -0.13304 -5.8299E-05 438.2222442324234 17.534 0.38906 17.548 17.25 17.639 0.013865 157 94 2 0 0 0 0.71527 1 8665 8665 15.847 0 1 1076500 58298 10972 38902 39783 67974 67974 -0.012522279679046733 SGGRQMPM 8 Unmodified _SGGRQMPM_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.1966857910156 2 432.196748 862.378942 NaN NaN NaN NaN NaN NaN NaN 14.167 1 14.174 13.674 14.674 0.0073986 0 0 0 0.97444 1 7013 7013 0.79363 0 1 + 58299 21482 38903 39784 67975 67975 -0.05775216608765277 SGGSDPDC 8 Unmodified _SGGSDPDC_ 0 0 0 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 REV__ENSG00000149115|ENST00000358252|TNKS1BP1 MSMS AL20221201_MKP_PDAC_01 4 369.1917114257812 2 369.123968 736.233383 NaN NaN NaN NaN NaN NaN NaN 4.0369 1 1.5549 1.0549 2.0549 -2.482 0 0 0 0.97444 1 2048 2048 0 0 1 + 58300 20979 38904 39785 67976 67976 -0.14528400923973095 SGGSSRNS 8 Unmodified _SGGSSRNS_ 0 0 0 ENST00000600328.7_1_19:18376706-18377168:-|nuORF ENST00000600328.7_1_19:18376706-18377168:-|nuORF ENST00000600328.7_1_19:18376706-18377168:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.171142578125 2 376.170099 750.325644 0.26654 0.00010027 0.7911 0.00029759 1.0576 0.00039785 376.170451216878 46.666 0.38296 46.666 46.436 46.819 0 46 17 3 0 0 0 0.80676 1 25429 25429 2.5775 0 1 7917700 58301 15797 38905 39786 67977 67977 -0.059505547954131544 SGGYTASS 8 Unmodified _SGGYTASS_ 0 0 0 REV__ENSG00000164327|ENST00000357387|RICTOR REV__ENSG00000164327|ENST00000357387|RICTOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1576843261719 2 365.156126 728.297698 NaN NaN NaN NaN NaN NaN NaN 72.309 1 72.309 71.809 72.809 0 0 0 0 0.97444 1 40265 40265 2.3027 1.5091 1 + 58302 21907 38906 39787 67978 67978 -0.07731877775518115 SGHKPPEAFC 10 Unmodified _SGHKPPEAFC_ 0 0 0 ENST00000237536.8_2_20:35412206-35412971:-|nuORF ENST00000237536.8_2_20:35412206-35412971:-|nuORF ENST00000237536.8_2_20:35412206-35412971:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1675415039062 3 358.167531 1071.48076 0.84613 0.00030306 -0.17866 -6.3989E-05 0.66748 0.00023907 358.1672563693517 80.62 0.27277 80.127 79.954 80.227 -0.49247 15 10 2 0 0 0 0.72196 1 44160 44160 0.15932 0 1 481330 58303 11090 38907 39788 67979 67979 -0.05211646985367224 SGHPWSPP 8 Unmodified _SGHPWSPP_ 0 0 0 ENST00000498082.1_1_12:121098912-121099173:+|nuORF ENST00000498082.1_1_12:121098912-121099173:+|nuORF ENST00000498082.1_1_12:121098912-121099173:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.703125 2 432.703577 863.392602 0.65671 0.00028416 0.067435 2.9179E-05 0.72415 0.00031334 432.70359961666804 44.253 0.35475 39.401 39.215 39.57 -4.852 34 25 2 0 0 0 0.80232 1 26953 26953 5.2307 5.2307 1 12097000 58304 14413 38908 39789 67980 67980 -0.04455899513664008 SGHRPNDAHHN 11 Unmodified _SGHRPNDAHHN_ 0 0 0 REV__nc|ENSG00000164190|Q6KC79-2|NIPBL REV__nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.16015625 2 621.279566 1240.54458 NaN NaN NaN NaN NaN NaN NaN 16.49 1 16.495 15.995 16.995 0.0050564 0 0 0 0.9435 1 8271 8271 0 0 1 + 58305 21890 38909 39790 67981 67981 -0.06607150504055426 SGILLELAQ 9 Unmodified _SGILLELAQ_ 0 0 0 REV__ENSG00000177427|ENST00000323019|MIEF2 REV__ENSG00000177427|ENST00000323019|MIEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2757873535156 2 472.276575 942.538597 0.1137 5.3698E-05 -0.22132 -0.00010452 -0.10761 -5.0824E-05 472.2764241941966 65.773 0.23596 65.288 65.101 65.337 -0.48428 14 9 2 0 0 0 0.30562 1 35906 35906 16.942 0 1 1296500 + 58306 22982 38910 39791 67982 67982 0.06502938211701803 SGILLELAQ 9 Unmodified _SGILLELAQ_ 0 0 0 REV__ENSG00000177427|ENST00000323019|MIEF2 REV__ENSG00000177427|ENST00000323019|MIEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.276575 942.538597 0.21461 0.00010136 -0.1207 -5.7002E-05 0.093917 4.4355E-05 472.2764890651321 65.297 0.22962 65.297 65.117 65.347 0 0.0043484 4.8938E-05 NaN 16.942 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 511650 + 58307 22982 38910 39791 0.06502938211701803 SGILLELAQ 9 Unmodified _SGILLELAQ_ 0 0 0 REV__ENSG00000177427|ENST00000323019|MIEF2 REV__ENSG00000177427|ENST00000323019|MIEF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 472.276575 942.538597 0.1137 5.3698E-05 -0.22132 -0.00010452 -0.10761 -5.0824E-05 472.2764241941966 65.773 0.23596 65.288 65.101 65.337 -0.48428 -0.0043484 -4.6102E-05 NaN 16.942 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1296500 + 58308 22982 38910 39791 0.06502938211701803 SGIPFRSRI 9 Unmodified _SGIPFRSRI_ 0 0 0 REV__nc|ENSG00000198920|Q2KHM9-2|KIAA0753 REV__nc|ENSG00000198920|Q2KHM9-2|KIAA0753 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8046875 2 516.801083 1031.58761 1.0834 0.00055989 3.2778 0.001694 4.3612 0.0022539 516.8029462064696 32.321 0.35143 28.465 28.319 28.67 -3.8562 29 18 3 0 0 0 0.49272 1 18396 18396 7.9102 0 1 24792000 + 58309 24099 38911 39792 67983 67983 0.07308271291344681 SGKAESFIYCS 11 Unmodified _SGKAESFIYCS_ 0 0 0 ENST00000423963.1_1_1:235093047-235095563:+|nuORF ENST00000423963.1_1_1:235093047-235095563:+|nuORF ENST00000423963.1_1_1:235093047-235095563:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7369995117188 2 596.271164 1190.52777 0.32168 0.00019181 0.74041 0.00044148 1.0621 0.00063329 596.2691913550237 36.907 0.14011 36.907 36.837 36.977 0 9 6 2 0 0 0 0.28953 1 19600 19600 13.042 1.5478 1 801440 58310 13138 38912 39793 67984 67984 -0.059868322249030825 SGKGMPPR 8 Unmodified _SGKGMPPR_ 0 0 0 ENST00000292539.8_1_8:145722273-145722696:+|nuORF;ENST00000526183.5_1_8:145722273-145723094:+|nuORF ENST00000292539.8_1_8:145722273-145722696:+|nuORF ENST00000292539.8_1_8:145722273-145722696:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2205810546875 2 415.22108 828.427607 0.72665 0.00030172 -1.6032 -0.00066569 -0.87656 -0.00036397 415.22018335104843 47.262 0.47841 47.224 47.083 47.562 -0.037773 58 22 4 0 0 0 0.80676 1 25417 25417 2.5775 0 1 28627000 58311 11473 38913 39794 67985 67985 0.006530200226279703 SGKKGGFVH 9 Unmodified _SGKKGGFVH_ 0 0 0 REV__nc|ENSG00000085276|Q03112-8|MECOM REV__nc|ENSG00000085276|Q03112-8|MECOM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.7546997070312 2 458.753601 915.49265 NaN NaN NaN NaN NaN NaN NaN 61.641 1 61.608 61.108 62.108 -0.032787 0 0 0 0.84369 1 33648 33648 2.3027 0 1 + 58312 17747 38914 39795 67986 67986 0.03152337820131379 SGKSGVKG 8 Unmodified _SGKSGVKG_ 0 0 0 REV__ENST00000561077.1_1_15:59397440-59406659:+|nuORF REV__ENST00000561077.1_1_15:59397440-59406659:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2077941894531 2 360.205953 718.397353 1.4564 0.00052461 1.1797 0.00042494 2.6361 0.00094955 360.20627830072294 76.08 0.34298 69.904 69.698 70.041 -6.1757 23 18 2 0 0 0 0.80722 1 49788 49788 2.3027 0 1 7584400 + 58313 28833 38915 39796 67987 67987 0.026889846290941932 SGLGEPLLANP 11 Unmodified _SGLGEPLLANP_ 0 0 0 ENST00000532085.1_1_11:118901280-118901526:-|nuORF ENST00000532085.1_1_11:118901280-118901526:-|nuORF ENST00000532085.1_1_11:118901280-118901526:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1067.907470703125 1 1067.57315 1066.56587 0.91448 0.00097627 0.51391 0.00054864 1.4284 0.0015249 1067.5700204780528 50.434 0.089718 44.895 44.839 44.929 -5.5391 6 5 2 0 0 0 0.29297 1 31608 31608 2.2828 0 1 7542600 58314 14923 38916 39797 67988 67988 0.03525421752101465 SGLMVATKYE 10 Unmodified _SGLMVATKYE_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1890563964844 3 366.854842 1097.5427 -0.54933 -0.00020153 0.48132 0.00017658 -0.068013 -2.4951E-05 366.8550333565905 17.801 0.15959 17.801 17.7 17.859 0 52 31 2 0 0 0 0.67033 1 8782 8782 3.3196 0 1 1201500 58315 3120 38917 39798 67989 67989 -0.002173403568804133 SGLPASGAYL 10 Unmodified _SGLPASGAYL_ 0 0 0 REV__ENST00000563868.1_1_16:1818048-1818822:+|nuORF REV__ENST00000563868.1_1_16:1818048-1818822:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.2451477050781 2 468.245275 934.475997 NaN NaN NaN NaN NaN NaN NaN 31.294 1 31.324 30.824 31.824 0.030106 0 0 0 0.99091 1 16388 16388 1.6526 0 1 + 58316 28882 38918 39799 67990 67990 0.006137921435083626 SGLTSTQLTVC 11 Unmodified _SGLTSTQLTVC_ 0 0 0 REV__ENST00000273347.9_1_3:101520322-101520790:+|nuORF REV__ENST00000273347.9_1_3:101520322-101520790:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2800903320312 2 555.278989 1108.54342 1.2696 0.00070499 0.19827 0.0001101 1.4679 0.00081508 555.2789682813041 86.713 0.938 80.537 79.957 80.895 -6.1757 88 50 2 0 0 0 0.50515 1 57083 57083 16.149 1.7437 1 19854000 + 58317 25158 38919 39800 67991 67991 -0.006505457078219479 SGLYSCCAHS 10 Unmodified _SGLYSCCAHS_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.2586669921875 2 514.202227 1026.3899 1.3365 0.00068723 -1.5338 -0.00078867 -0.19728 -0.00010144 514.2012512490911 64.474 0.28314 58.298 58.167 58.45 -6.1757 25 15 3 0 0 0 0.23325 1 41806 41806 6.2058 1.8765 1 14598000 58318 2906 38920 39801 67992 67992 -0.12223859025175443 SGNGACHY 8 Unmodified _SGNGACHY_ 0 0 0 REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF;REV__ENSG00000182326|ENST00000360817|C1S REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 404.6551513671875 2 404.65577 807.296987 NaN NaN NaN NaN NaN NaN NaN 43.417 1 38.652 38.152 39.152 -4.7648 0 0 0 0.97444 1 26370 26370 0.79363 0 1 + 58319 27947;23260 38921 39802 67993 67993 -0.11436995696226404 SGNLTVPWI 9 Unmodified _SGNLTVPWI_ 0 0 0 ENST00000472135.2_1_X:83695455-83724556:-|nuORF;nc|ENSG00000165259|Q7Z353-2|HDX;ENSG00000165259|ENST00000373177|HDX ENST00000472135.2_1_X:83695455-83724556:-|nuORF ENST00000472135.2_1_X:83695455-83724556:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7702941894531 2 493.768917 985.523281 0.3471 0.00017139 0.49721 0.00024551 0.84432 0.0004169 493.7691225570153 54.446 0.18092 54.379 54.262 54.443 -0.06694 14 8 2 0 0 0 0.16226 1 29593 29593 26.884 6.43 1 2980700 58320 7314 38922 39803 67994 67994 0.029940714145027414 SGNSLFLRF 9 Unmodified _SGNSLFLRF_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7791137695312 2 520.779816 1039.54508 NaN NaN NaN NaN NaN NaN NaN 75.166 1 75.166 74.666 75.666 0 0 0 0 0.83049 1 41818 41818 3.9444 1.3669 1 58321 2505 38923 39804 67995 67995 0.026888761630971203 SGNYFAPI 8 Unmodified _SGNYFAPI_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.4212646484375 1 868.419945 867.412668 0.12175 0.00010573 0.48973 0.00042529 0.61148 0.00053102 868.4206968461472 64.19 0.32745 64.19 63.997 64.324 0 29 13 3 0 0 0 0.6895 1 35853 35853 18.135 0 1 2474700 58322 9286 38924 39805 67996 67996 -0.026341485737134462 SGNYFAPI 8 Unmodified _SGNYFAPI_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 868.420166015625 1 868.419945 867.412668 -0.055198 -4.7935E-05 -0.41116 -0.00035706 -0.46636 -0.000405 868.4196390784799 64.677 0.30127 64.191 64.014 64.316 -0.48512 26 13 2 0 0 0 0.61462 1 35318 35318 24.674 1.5255 1 3226100 58323 9286 38924 39805 67997 67997 -0.026341485737134462 SGPALLSLL 9 Unmodified _SGPALLSLL_ 0 0 0 ENST00000597969.5_1_19:49809336-49813046:-|nuORF ENST00000597969.5_1_19:49809336-49813046:-|nuORF ENST00000597969.5_1_19:49809336-49813046:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.5280151367188 1 870.529495 869.522219 0.10782 9.386E-05 1.5171 0.0013207 1.6249 0.0014146 870.530856271431 79.345 0.41414 78.855 78.616 79.03 -0.48932 30 17 2 0 0 0 0.095405 1 43373 43373 34.102 3.8776 1 1377700 58324 15779 38925 39806 67998 67998 0.08223857045629757 SGPCCGDGD 9 Unmodified _SGPCCGDGD_ 0 0 0 ENST00000541410.1_1_12:122839622-122839970:-|nuORF ENST00000541410.1_1_12:122839622-122839970:-|nuORF ENST00000541410.1_1_12:122839622-122839970:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 811.2407836914062 1 810.23928 809.232003 -0.074991 -6.0761E-05 -0.71922 -0.00058274 -0.79421 -0.0006435 810.2390958572677 102.47 0.13494 102.35 102.28 102.41 -0.11613 7 5 2 0 0 0 0.62242 1 55922 55922 0 0 1 279480 58325 15046 38926 39807 67999 67999 -0.1802435828437865 SGPFGQLFRP 10 Unmodified _SGPFGQLFRP_ 0 0 0 ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.1981201171875 3 369.197819 1104.57163 0.0056687 2.0929E-06 0.35165 0.00012983 0.35732 0.00013192 369.19790053605936 38.339 0.43014 38.052 37.787 38.217 -0.28687 32 19 2 0 0 0 0.6966 1 20198 20198 1.5923 0 1 1945500 58326 8557 38927 39808 68000 68000 0.023525650544115706 SGPFGQLFRP 10 Unmodified _SGPFGQLFRP_ 0 0 0 ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENST00000587204.1_1_18:12308291-12311096:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF ENST00000417736.2_1_18:12308439-12326126:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.197819 1104.57163 0.069939 2.5821E-05 2.4708 0.00091221 2.5407 0.00093804 369.1989109332935 38.025 0.24246 38.025 37.806 38.049 0 -0.013782 0.0020364 NaN 1.5923 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 581710 58327 8557 38927 39808 0.023525650544115706 SGPIASLPVL 10 Unmodified _SGPIASLPVL_ 0 0 0 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 REV__nc|ENSG00000184226|Q9HC56-2|PCDH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2866516113281 2 477.286943 952.559333 0.67179 0.00032063 -0.85518 -0.00040817 -0.18339 -8.7531E-05 477.2866821564773 50.986 0.2662 50.986 50.843 51.109 0 29 13 3 0 0 0 0.1028 1 28094 28094 46.021 0.32134 1 5840600 + 58328 23408 38928 39809 68001 68001 0.08115528591372367 SGPPGMFV 8 Unmodified _SGPPGMFV_ 0 0 0 REV__ENSG00000204291|ENST00000375001|COL15A1 REV__ENSG00000204291|ENST00000375001|COL15A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1892700195312 2 396.191457 790.368361 NaN NaN NaN NaN NaN NaN NaN 78 1 77.518 77.018 78.018 -0.4826 0 0 0 0.97444 1 42717 42717 0.79363 0 1 + 58329 24154 38929 39810 68002 68002 -0.035208759915462906 SGPRAFSS 8 Unmodified _SGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.7009887695312 2 404.701035 807.387516 -0.60131 -0.00024335 0.47503 0.00019225 -0.12628 -5.1107E-05 404.70118341757745 18.113 0.69641 18.113 17.574 18.27 0 261 108 3 0 0 0 0.13843 3 8786 8786;8886;8988 89.401 7.7691 1 6650900 + 58330 165 38930 39811 68003;68004;68005 68003 -0.02388203376290221 SGPRAFSS 8 Unmodified _SGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.7009887695312 2 404.701035 807.387516 -0.53529 -0.00021663 0.22482 9.0984E-05 -0.31048 -0.00012565 404.70111675972913 18.024 0.30374 18.038 17.873 18.177 0.013865 92 47 2 0 0 0 0.27914 2 9040 8942;9040 57.722 3.8892 1 1819800 + 58331 165 38930 39811 68006;68007 68007 -0.02388203376290221 SGPRAFSS 8 Unmodified _SGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.7003784179688 2 404.701035 807.387516 -0.13988 -5.6608E-05 -0.47242 -0.00019119 -0.61229 -0.0002478 404.7008397917754 17.966 0.31976 17.972 17.76 18.08 0.0060482 32 22 2 0 0 0 0.46468 1 9109 9109 38.176 3.7738 1 1419200 + 58332 165 38930 39811 68008 68008 -0.02388203376290221 SGPRAFSS 8 Unmodified _SGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000397239.7_1_6:18258274-18264769:-|nuORF;ENST00000505224.5_1_6:18258244-18264760:-|nuORF;ENST00000244776.11_1_6:18258274-18264769:-|nuORF CON__P05787 CON__P05787 MSMS AL20221201_MKP_PDAC_01 4 404.701416015625 2 404.701035 807.387516 NaN NaN NaN NaN NaN NaN NaN 19.298 1 16.641 16.141 17.141 -2.6564 0 0 0 0.46765 1 10211 10211 43.772 3.8227 1 + 58333 165 38930 39811 68009 68009 -0.02388203376290221 SGPRAFSSRS 10 Unmodified _SGPRAFSSRS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.5159912109375 3 351.180828 1050.52066 -0.073308 -2.5744E-05 1.6311 0.00057282 1.5578 0.00054708 351.1811211169779 15.192 0.16588 15.198 15.124 15.29 0.0057774 11 9 2 0 0 0 0.46141 1 7571 7571 18.34 8.1891 1 444480 + 58334 165 38931 39812 68010 68010 -0.0025838399044459948 SGPRAFSSRSY 11 Unmodified _SGPRAFSSRSY_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8694763183594 3 405.535271 1213.58398 -0.076277 -3.0933E-05 -1.507 -0.00061116 -1.5833 -0.00064209 405.86887725722454 21.661 0.13769 21.675 21.621 21.758 0.013796 13 9 2 0 0 0 0.68372 1 11116 11116 2.9264 1.02 1 974230 + 58335 165 38932 39813 68011 68011 -0.014264432732034038 SGPSAHAH 8 Unmodified _SGPSAHAH_ 0 0 0 ENSG00000143373|ENST00000336715|ZNF687;nc|ENSG00000143373|Q8N1G0-2|ZNF687;ENST00000459919.1_1_1:151260729-151261748:+|nuORF ENSG00000143373|ENST00000336715|ZNF687 ENSG00000143373|ENST00000336715|ZNF687 MSMS AL20221201_MKP_PDAC_01 4 382.1764526367188 2 382.177727 762.3409 NaN NaN NaN NaN NaN NaN NaN 13.805 1 11.302 10.802 11.802 -2.5029 0 0 0 0.97444 1 6998 6998 0.79363 0.79363 1 58336 5499 38933 39814 68012 68012 -0.049776432075873345 SGPVHGPA 8 Unmodified _SGPVHGPA_ 0 0 0 REV__ENST00000569852.1_1_16:2613469-2613655:-|nuORF REV__ENST00000569852.1_1_16:2613469-2613655:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.1855773925781 2 361.18502 720.355488 NaN NaN NaN NaN NaN NaN NaN 18.946 1 16.325 15.825 16.825 -2.6215 0 0 0 0.95201 1 10007 10007 10.183 0 1 + 58337 28961 38934 39815 68013 68013 -0.01587571059428683 SGPVHGPA 8 Unmodified _SGPVHGPA_ 0 0 0 REV__ENST00000569852.1_1_16:2613469-2613655:-|nuORF REV__ENST00000569852.1_1_16:2613469-2613655:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.1852416992188 2 361.18502 720.355488 NaN NaN NaN NaN NaN NaN NaN 19.125 1 16.468 15.968 16.968 -2.6564 0 0 0 0.95201 1 10108 10108 10.183 0 1 + 58338 28961 38934 39815 68014 68014 -0.01587571059428683 SGPWESEF 8 Unmodified _SGPWESEF_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.3932495117188 1 938.389039 937.381762 0.1568 0.00014714 -0.37659 -0.00035339 -0.21979 -0.00020625 938.3888203153836 48.067 0.3355 48.067 47.936 48.272 0 34 16 3 0 0 0 0.80676 1 26334 26334 2.5775 0 1 4894400 58339 2457 38935 39816 68015 68015 -0.08943346678620401 SGPYGGGGQYF 11 Unmodified _SGPYGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2353515625 2 545.235439 1088.45632 0.34623 0.00018877 -0.084182 -4.5899E-05 0.26204 0.00014288 545.2352995261772 48.023 0.40016 48.023 47.831 48.231 0 59 19 4 0 0 0 0.37677 2 26397 26279;26397 22.736 14.143 1 42417000 58340 74 38936 39817 68016;68017 68017 -0.08436583867228364 SGPYGGGGQYF 11 Unmodified _SGPYGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2344360351562 2 545.235439 1088.45632 0.19332 0.0001054 0.055268 3.0134E-05 0.24859 0.00013554 545.2353360917664 48.499 0.25458 48.128 47.945 48.2 -0.37172 32 12 3 0 0 0 0.00047726 1 25983 25983 88.954 88.954 1 7406200 58341 74 38936 39817 68018 68018 -0.08436583867228364 SGPYGGGGQYF 11 Unmodified _SGPYGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2355346679688 2 545.235439 1088.45632 1.0209 0.00055665 -0.015938 -8.6902E-06 1.005 0.00054796 545.2355475485529 55.127 0.39315 49.206 48.94 49.334 -5.9211 45 24 2 0 0 0 0.036454 1 34944 34944 53.833 32.086 1 81774000 58342 74 38936 39817 68019 68019 -0.08436583867228364 SGRGFPSIF 9 Unmodified _SGRGFPSIF_ 0 0 0 REV__nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1 REV__nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2532653808594 2 484.253434 966.492316 1.0402 0.00050373 -0.10171 -4.9254E-05 0.9385 0.00045447 484.25336845789155 52.907 0.42739 47.103 46.891 47.318 -5.8042 37 23 2 0 0 0 0.14 1 33472 33472 29.082 2.1979 1 32329000 + 58343 28884 38937 39818 68020 68020 0.007729181002673613 SGRTAKLY 8 Unmodified _SGRTAKLY_ 0 0 0 nc|ENSG00000163539|O75122-2|CLASP2 nc|ENSG00000163539|O75122-2|CLASP2 nc|ENSG00000163539|O75122-2|CLASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.232421875 2 448.253434 894.492316 0.83151 0.00037273 1.7123 0.00076753 2.5438 0.0011403 448.253917225356 40.616 0.39308 40.621 40.424 40.817 0.0050545 23 18 2 0 0 0 0.80676 1 21557 21557 2.5775 0.27475 1 5752400 58344 16327 38938 39819 68021 68021 0.040849181002727164 SGSARSSK 8 Unmodified _SGSARSSK_ 0 0 0 ENST00000562435.5_1_16:47165930-47177876:-|nuORF REV__ZNF296|p.P219S|1|0.25|ENSG00000170684|chr19:45072374-45072374|G/A|missense_variant REV__ZNF296|p.P219S|1|0.25|ENSG00000170684|chr19:45072374-45072374|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2040710449219 2 390.203941 778.39333 NaN NaN NaN NaN NaN NaN NaN 16.37 1 16.375 15.875 16.875 0.0050564 0 0 0 0.97444 1 8206 8206 1.8442 0 1 58345 15341 38939 39820 68022 68022 -0.004731048646135605 SGSELRAVF 9 Unmodified _SGSELRAVF_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2561950683594 2 483.256174 964.497795 0.25223 0.00012189 -0.4116 -0.00019891 -0.15937 -7.7015E-05 483.2558605697682 31.619 0.22103 31.49 31.38 31.601 -0.12915 15 8 2 0 0 0 0.25681 1 16439 16439 19.257 0 1 2925000 58346 9489 38940 39821 68023 68023 0.014125968920893683 SGSELRAVF 9 Unmodified _SGSELRAVF_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 483.256174 964.497795 0.82321 0.00039782 0.97579 0.00047156 1.799 0.00086938 483.2568340224439 35.234 0.36964 31.139 30.916 31.286 -4.0951 -0.17548 0.00050159 NaN 19.257 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 11228000 58347 9489 38940 39821 0.014125968920893683 SGSELVQKF 9 Unmodified _SGSELVQKF_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;ENST00000581764.1_1_17:61907522-61908306:+|nuORF nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7647094726562 2 497.763832 993.513111 0.63644 0.0003168 0.034031 1.6939E-05 0.67047 0.00033374 497.76398607100106 38.8 0.24938 38.8 38.703 38.953 0 17 10 2 0 0 0 0.0086722 1 20802 20802 88.954 46.859 1 2707800 58348 1458 38941 39822 68024 68024 0.01609463689283075 SGSQVKPK 8 Unmodified _SGSQVKPK_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.4716186523438 1 830.473043 829.465767 1.6451 0.0013662 -3.0864 -0.0025632 -1.4414 -0.001197 830.4703720631314 103.56 0.043137 97.38 97.358 97.401 -6.1757 12 7 2 0 0 0 0.80722 1 69422 69422 2.3027 0 1 9408400 + 58349 29813 38942 39823 68025 68025 0.044212292089468974 SGSRRRRSRVC 11 Unmodified _SGSRRRRSRVC_ 0 0 0 REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF REV__ENST00000515158.5_1_5:179050143-179050595:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.910888671875 3 440.577699 1318.71127 0.22106 9.7396E-05 -1.1625 -0.00051219 -0.94148 -0.00041479 440.5772022520157 35.371 0.20891 35.396 35.285 35.494 0.024971 23 9 3 0 0 0 0.70705 1 18684 18684 3.5927 3.5927 1 5167400 + 58350 28209 38943 39824 68026 68026 0.0646599912001875 SGSSTALLY 9 Unmodified _SGSSTALLY_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000122779|O15164-2|TRIM24 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4509887695312 1 898.451639 897.444362 0.092784 8.3362E-05 -0.78105 -0.00070174 -0.68827 -0.00061838 898.4510110016033 48.138 0.31508 48.138 47.936 48.251 0 27 15 3 0 0 0 0.06187 1 26421 26421 42.095 5.9675 1 4404600 58351 9940;3661 38944 39825 68027 68027 -0.008462006104309694 SGSSTALLY 9 Unmodified _SGSSTALLY_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33;nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000122779|O15164-2|TRIM24 ENSG00000197323|ENST00000358465|TRIM33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7298889160156 2 449.729458 897.444362 NaN NaN NaN NaN NaN NaN NaN 48.139 1 48.139 47.639 48.639 0 0 0 0 0.46757 1 26393 26393 16.942 3.4344 1 58352 9940;3661 38944 39825 68028 68028 -0.008462006104309694 SGTPHGLEY 9 Unmodified _SGTPHGLEY_ 0 0 0 ENST00000419296.1_1_2:110752028-110752415:+|nuORF ENST00000419296.1_1_2:110752028-110752415:+|nuORF ENST00000419296.1_1_2:110752028-110752415:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7247619628906 2 480.724707 959.43486 NaN NaN NaN NaN NaN NaN NaN 22.121 1 22.121 21.621 22.621 0 0 0 0 0.76439 1 11240 11240 7.2892 0 1 58353 13085 38945 39826 68029 68029 -0.0464796889596073 SGTQVLLTL 9 Unmodified _SGTQVLLTL_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.276123046875 2 466.276575 930.538597 0.34487 0.0001608 0.77593 0.0003618 1.1208 0.0005226 466.2769777397695 67.265 0.25823 66.782 66.656 66.914 -0.48219 29 11 3 0 0 0 0.042911 1 36722 36722 48.346 0 1 4411300 58354 1775 38946 39827 68030 68030 0.07054938211717854 SGTQVLLTL 9 Unmodified _SGTQVLLTL_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 466.276575 930.538597 0.73598 0.00034317 -0.33979 -0.00015844 0.39619 0.00018473 466.27626997612606 66.784 0.25384 66.784 66.658 66.912 0 0.00085029 -0.00051082 NaN 48.346 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1397800 58355 1775 38946 39827 0.07054938211717854 SGTWPTTP 8 Unmodified _SGTWPTTP_ 0 0 0 ENST00000492112.2_1_1:24305263-24306804:-|nuORF;ENST00000473858.5_1_1:24294155-24306819:-|nuORF ENST00000492112.2_1_1:24305263-24306804:-|nuORF ENST00000492112.2_1_1:24305263-24306804:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 846.4423217773438 1 846.399209 845.391933 1.4723 0.0012462 -0.47482 -0.00040189 0.99751 0.0008443 846.3981612307367 104.52 0.046242 98.348 98.313 98.36 -6.1757 6 3 2 0 0 0 8.7369 1 69980 69980 0.69038 0 1 2357600 58356 13926 38947 39828 68031 68031 -0.03694738953390697 SGVEVFMVY 9 Oxidation (M) _SGVEVFM(Oxidation (M))VY_ SGVEVFM(1)VY SGVEVFM(57)VY 0 0 1 ENSG00000142623|ENST00000375471|PADI1 ENSG00000142623|ENST00000375471|PADI1 ENSG00000142623|ENST00000375471|PADI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7471313476562 2 523.746793 1045.47903 -0.10294 -5.3915E-05 -0.80835 -0.00042337 -0.91129 -0.00047728 523.7468994256534 70 0.44385 69.521 69.314 69.758 -0.47903 33 23 2 0 0 0 0.026094 1 38301 38301 57.471 27.247 1 3488800 58357 5433 38948 39829 68032 68032 997 -0.04188700793974931 SGVILYAL 8 Unmodified _SGVILYAL_ 0 0 0 ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 835.491455078125 1 835.492381 834.485105 1.1796 0.00098556 -0.19476 -0.00016272 0.98486 0.00082284 835.4917279330548 96.23 0.14847 90.055 89.974 90.122 -6.1757 13 8 2 0 0 0 0.21786 1 63737 63737 67.035 10.494 1 10716000 58358 4396 38949 39830 68033 68033 0.061241854998343115 SGVIVGGG 8 Unmodified _SGVIVGGG_ 0 0 0 nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;nc|ENSG00000075826|Q9NQW1-2|SEC31B;nc|ENSG00000075826|Q9NQW1-4|SEC31B nc|ENSG00000075826|Q9NQW1-5|SEC31B nc|ENSG00000075826|Q9NQW1-5|SEC31B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.8209838867188 1 645.356616 644.34934 -0.73664 -0.00047539 0.25769 0.0001663 -0.47895 -0.00030909 645.3568130871873 28.626 0.18361 28.626 28.52 28.704 0 12 8 2 0 0 0 8.7369 1 14796 14796 19.439 0 1 2128000 58359 1170 38950 39831 68034 68034 0.012939107090573998 SGVPEAASAY 10 Unmodified _SGVPEAASAY_ 0 0 0 REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.22509765625 2 476.224539 950.434526 0.24566 0.00011699 0.32826 0.00015632 0.57391 0.00027331 476.22464899451955 58.801 0.22483 58.801 58.677 58.902 0 17 9 2 0 0 0 0.33553 1 32742 32742 25.399 11.891 1 2121500 + 58360 21591 38951 39832 68035 68035 -0.04267388615824075 SGVPEAASAY 10 Unmodified _SGVPEAASAY_ 0 0 0 REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF REV__ENST00000495285.1_1_3:197257612-197260782:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2429504394531 2 476.224539 950.434526 0.24566 0.00011699 0.32826 0.00015632 0.57391 0.00027331 476.22464899451955 58.801 0.22483 58.801 58.677 58.902 0 17 9 2 0 0 0 0.22941 1 32695 32695 13.906 2.2658 1 2121500 + 58361 21591 38951 39832 68036 68036 -0.04267388615824075 SGVPLAKG 8 Unmodified _SGVPLAKG_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7198181152344 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 28.857 1 28.887 28.387 29.387 0.030106 0 0 0 0.97444 1 15037 15037 0.69038 0 1 58362 3420 38952 39833 68037 68037 0.04822459151523617 SGVTITEL 8 Unmodified _SGVTITEL_ 0 0 0 nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR nc|ENSG00000116147|Q92752-2|TNR nc|ENSG00000116147|Q92752-2|TNR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8877563476562 2 410.226551 818.438549 -0.63538 -0.00026065 0.47236 0.00019377 -0.16302 -6.6876E-05 410.2266252612268 31.924 0.36541 31.924 31.739 32.105 0 25 17 2 0 0 0 8.7369 1 16616 16616 24.674 5.2349 1 1889800 58363 3198 38953 39834 68038 68038 0.02206700877889034 SGVTITEL 8 Unmodified _SGVTITEL_ 0 0 0 nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR nc|ENSG00000116147|Q92752-2|TNR nc|ENSG00000116147|Q92752-2|TNR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2272033691406 2 410.226551 818.438549 0.078181 3.2072E-05 -1.8657 -0.00076534 -1.7875 -0.00073327 410.2251598616238 31.838 0.29008 31.709 31.503 31.793 -0.12915 16 11 2 0 0 0 0.5284 1 16586 16586 32.117 5.7757 1 1321100 58364 3198 38953 39834 68039 68039 0.02206700877889034 SGVVEVPFLL 10 Unmodified _SGVVEVPFLL_ 0 0 0 ENST00000470582.1_1_2:96799698-96803509:-|nuORF;ENSG00000188886|ENST00000342380|ASTL ENST00000470582.1_1_2:96799698-96803509:-|nuORF ENST00000470582.1_1_2:96799698-96803509:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7843017578125 2 530.307875 1058.6012 -0.17705 -9.3889E-05 1.302 0.00069045 1.1249 0.00059656 530.3092684347056 51.544 0.18446 51.13 51.064 51.248 -0.41351 15 9 3 0 0 0 0.22811 1 27771 27771 14.838 0 1 1422800 58365 9706 38954 39835 68040 68040 0.07424084279909948 SGWTERQPDL 10 Unmodified _SGWTERQPDL_ 0 0 0 REV__ENST00000331113.8_1_7:119914094-119914142:+|nuORF REV__ENST00000331113.8_1_7:119914094-119914142:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8612060546875 3 396.859643 1187.5571 0.56409 0.00022387 1.5673 0.00062201 2.1314 0.00084587 396.8599546603414 27.835 0.3432 24.687 24.483 24.826 -3.1482 31 17 3 0 0 0 0.65282 1 15466 15466 4.7159 1.1232 1 10233000 + 58366 25600 38955 39836 68041 68041 -0.029175518843885584 SGYLRGRRNM 10 Unmodified _SGYLRGRRNM_ 0 0 0 REV__ENSG00000070388|ENST00000215530|FGF22 REV__ENSG00000070388|ENST00000215530|FGF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.327880859375 2 605.317106 1208.61966 0.22416 0.00013569 -0.82708 -0.00050064 -0.60291 -0.00036495 605.3161485118831 75.045 0.53297 75.091 74.834 75.367 0.045967 71 25 4 0 0 0 0.57893 1 41291 41291 12.241 2.8575 1 93537000 + 58367 17471 38956 39837 68042 68042 0.023693157028219503 SGYPGPQVSY 10 Unmodified _SGYPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7449951171875 2 527.745639 1053.47673 0.22726 0.00011994 -2.206 -0.0011642 -1.9787 -0.0010443 527.7445301821151 43.704 0.23737 43.704 43.486 43.723 0 21 11 2 0 0 0 0.36296 1 23723 23723 23.79 5.6434 1 11325000 58368 9647 38957 39838 68043 68043 -0.04787413207418467 SGYPGPQVSY 10 Unmodified _SGYPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7462768554688 2 527.745639 1053.47673 1.075 0.00056731 -1.1861 -0.00062595 -0.11112 -5.8644E-05 527.7448943755138 50.859 0.44028 45.21 44.99 45.43 -5.649 41 26 2 0 0 0 0.07026 1 31852 31852 53.317 22.613 1 37373000 58369 9647 38957 39838 68044 68044 -0.04787413207418467 SGYTQLYY 8 Unmodified _SGYTQLYY_ 0 0 0 REV__ENSG00000244694|ENST00000339488|PTCHD4 REV__ENSG00000244694|ENST00000339488|PTCHD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7274780273438 2 497.729458 993.444362 NaN NaN NaN NaN NaN NaN NaN 6.0577 1 5.9802 5.4802 6.4802 -0.07749 0 0 0 0.97444 1 2990 2990 0.79363 0 1 + 58370 24485 38958 39839 68045 68045 -0.0526220061043432 SHAEDHHYC 9 Unmodified _SHAEDHHYC_ 0 0 0 REV__ENSG00000236699|ENST00000420470|ARHGEF38 REV__ENSG00000236699|ENST00000420470|ARHGEF38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7066650390625 2 549.706522 1097.39849 0.65416 0.0003596 0.63122 0.00034699 1.2854 0.00070659 549.7068278102397 43.073 0.22908 38.308 38.161 38.39 -4.7648 22 14 2 0 0 0 0.55144 1 26108 26108 4.3292 0 1 8448400 + 58371 24426 38959 39840 68046 68046 -0.14631169064318783 SHALIKSLF 9 Unmodified _SHALIKSLF_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENSG00000128641|ENST00000392318|MYO1B;ENST00000494129.1_1_2:192246088-192252282:+|nuORF ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3002014160156 2 508.300384 1014.58622 0.1576 8.0109E-05 0.30327 0.00015415 0.46087 0.00023426 508.3005048314706 51.177 0.43904 51.123 50.942 51.381 -0.053871 64 21 5 0 0 0 0.024189 2 27638 27638;27745 59.368 31.74 1 77415000 58372 4081;14328 38960 39841 68047;68048 68047 0.07950637202566213 SHCLDIDLNF 10 Unmodified _SHCLDIDLNF_ 0 0 0 ENSG00000186788|ENST00000445385|SPATA31D3;ENSG00000189357|ENST00000419782|SPATA31D4 ENSG00000186788|ENST00000445385|SPATA31D3 ENSG00000186788|ENST00000445385|SPATA31D3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5159606933594 3 392.849979 1175.52811 NaN NaN NaN NaN NaN NaN NaN 72.143 1 71.667 71.167 72.167 -0.47609 0 0 0 0.98857 1 39479 39479 1.9064 1.1298 1 58373 9504 38961 39842 68049 68049 -0.05263412505019005 SHEACLHF 8 Unmodified _SHEACLHF_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2068786621094 2 472.20817 942.401786 NaN NaN NaN NaN NaN NaN NaN 25.883 1 25.866 25.366 26.366 -0.017006 0 0 0 0.95607 1 13292 13292 9.3474 3.587 1 58374 5126 38962 39843 68050 68050 -0.07171874219648089 SHEDYTHVL 9 Unmodified _SHEDYTHVL_ 0 0 0 REV__nc|ENSG00000120868|O14727-3|APAF1 REV__nc|ENSG00000120868|O14727-3|APAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7561645507812 2 550.753995 1099.49344 -0.14015 -7.7188E-05 -0.032046 -1.765E-05 -0.1722 -9.4837E-05 550.754115171075 20.093 0.50712 20.093 19.72 20.227 0 107 53 4 0 0 0 0.55144 1 9911 9911 4.3292 1.7518 1 10619000 + 58375 19266 38963 39844 68051 68051 -0.052329123214803985 SHEEEEEIGT 10 Unmodified _SHEEEEEIGT_ 0 0 0 REV__ENSG00000047617|ENST00000682330|ANO2 REV__ENSG00000047617|ENST00000682330|ANO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.24365234375 2 580.241115 1158.46768 NaN NaN NaN NaN NaN NaN NaN 42.859 1 42.549 42.049 43.049 -0.31039 0 0 0 0.95103 1 22780 22780 5.7319 0.50118 1 + 58376 17230 38964 39845 68052 68052 -0.1052185135442869 SHEEEIEF 8 Unmodified _SHEEEIEF_ 0 0 0 nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-4|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2198791503906 2 510.219454 1018.42436 0.26433 0.00013487 0.068199 3.4796E-05 0.33253 0.00016966 510.220831886576 87.42 0.36667 86.916 86.734 87.101 -0.50423 35 13 4 0 0 0 0.80975 1 47817 47817 0.79363 0 1 1128100 58377 1128 38965 39846 68053 68053 -0.08411996341033046 SHEFYKFC 8 Unmodified _SHEFYKFC_ 0 0 0 nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2 nc|ENSG00000134900|P29144|TPP2 nc|ENSG00000134900|P29144|TPP2 MSMS AL20221201_MKP_PDAC_01 4 354.1920776367188 3 354.156744 1059.4484 NaN NaN NaN NaN NaN NaN NaN 14.34 1 11.837 11.337 12.337 -2.5029 0 0 0 0.97444 1 7278 7278 0.40072 0.1317 1 58378 4651 38966 39847 68054 68054 -0.07894434388344962 SHEGSSQDPHA 11 Unmodified _SHEGSSQDPHA_ 0 0 0 nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6 nc|ENSG00000143164|Q58WW2-4|DCAF6 nc|ENSG00000143164|Q58WW2-4|DCAF6 MSMS AL20221201_MKP_PDAC_01 4 384.4967956542969 3 384.495253 1150.46393 NaN NaN NaN NaN NaN NaN NaN 93.148 1 86.972 86.472 87.472 -6.1757 0 0 0 0.88164 1 61637 61637 4.1166 0 1 58379 5471 38967 39848 68055 68055 -0.10528476337617576 SHERAQREW 9 Unmodified _SHERAQREW_ 0 0 0 REV__ENSG00000109610|ENST00000382120|SOD3 REV__ENSG00000109610|ENST00000382120|SOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.1944885253906 3 400.195249 1197.56392 -0.00085659 -3.428E-07 -2.0723 -0.00082931 -2.0731 -0.00082966 400.19454128288083 23.372 0.096792 23.393 23.322 23.419 0.021185 5 3 2 0 0 0 0.56345 1 12051 12051 2.086 0.34373 1 2081000 + 58380 18664 38968 39849 68056 68056 -0.026961942131492833 SHEYQLESW 9 Unmodified _SHEYQLESW_ 0 0 0 nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7592163085938 2 589.759278 1177.504 NaN NaN NaN NaN NaN NaN NaN 32.319 1 32.349 31.849 32.849 0.029743 0 0 0 0.84737 1 16966 16966 1.8442 0 1 58381 7506 38969 39850 68057 68057 -0.07764929667041542 SHFDIFYIY 9 Unmodified _SHFDIFYIY_ 0 0 0 ENSG00000076356|ENST00000367033|PLXNA2;nc|ENSG00000076356|O75051-2|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 ENSG00000076356|ENST00000367033|PLXNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1949768066406 3 402.193963 1203.56006 -0.60847 -0.00024472 0.32849 0.00013212 -0.27998 -0.00011261 402.19415038227487 17.68 0.15834 17.68 17.574 17.732 0 42 25 2 0 0 0 0.58466 1 8696 8696 1.1933 0 1 645770 58382 1186 38970 39851 68058 68058 -0.033576767595604906 SHFNQGST 8 Unmodified _SHFNQGST_ 0 0 0 REV__nc|ENSG00000164164|Q01804-5|OTUD4;REV__ENST00000237841.5_1_12:3948629-3949796:+|nuORF REV__nc|ENSG00000164164|Q01804-5|OTUD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.8759155273438 2 439.193574 876.372594 NaN NaN NaN NaN NaN NaN NaN 96.452 1 96.452 95.952 96.952 0 0 0 0 0.97444 1 53302 53302 0.69038 0 1 + 58383 21882;24834 38971 39852 68059 68059 -0.07053695244280789 SHFVTNFF 8 Unmodified _SHFVTNFF_ 0 0 0 REV__nc|ENSG00000100478|Q9Y587-4|AP4S1 REV__nc|ENSG00000100478|Q9Y587-4|AP4S1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7406921386719 2 499.74016 997.465767 NaN NaN NaN NaN NaN NaN NaN 83.223 1 82.726 82.226 83.226 -0.49751 0 0 0 0.97444 1 45558 45558 0.79363 0 1 + 58384 29534 38972 39853 68060 68060 -0.03306770791039071 SHGCCQYCDFV 11 Unmodified _SHGCCQYCDFV_ 0 0 0 REV__ENST00000532167.5_1_11:122930938-122932032:-|nuORF REV__ENST00000532167.5_1_11:122930938-122932032:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1518249511719 3 421.152676 1260.4362 0.04306 1.8135E-05 -0.85908 -0.0003618 -0.81602 -0.00034367 421.1521139303262 63.198 0.26393 63.198 63.031 63.295 0 18 10 2 0 0 0 0.74157 1 35228 35228 0.094841 0 1 973970 + 58385 28456 38973 39854 68061 68061 -0.18360162185376794 SHGGPDTY 8 Unmodified _SHGGPDTY_ 0 0 0 REV__ENST00000367704.5_1_1:173839620-173839749:+|nuORF REV__ENST00000367704.5_1_1:173839620-173839749:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8399658203125 2 417.17485 832.335146 NaN NaN NaN NaN NaN NaN NaN 23 1 23 22.5 23.5 0 0 0 0 0.97444 1 11713 11713 0.79363 0 1 + 58386 25996 38974 39855 68062 68062 -0.08772786509916841 SHGHFDCF 8 Unmodified _SHGHFDCF_ 0 0 0 REV__nc|ENSG00000273540|Q96MI9|AGBL1 REV__nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.1854553222656 2 475.184694 948.354836 0.73986 0.00035157 0.31449 0.00014944 1.0544 0.00050101 475.1847418530052 62.571 0.38897 62.083 61.872 62.261 -0.48764 34 18 2 0 0 0 0.80975 1 34185 34185 0.79363 0 1 4196100 + 58387 24635 38975 39856 68063 68063 -0.12140733770797851 SHGHNGVHGS 10 Unmodified _SHGHNGVHGS_ 0 0 0 REV__ENSG00000204713|ENST00000377199|TRIM27 REV__ENSG00000204713|ENST00000377199|TRIM27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7208557128906 2 494.720821 987.42709 NaN NaN NaN NaN NaN NaN NaN 9.5725 1 9.59 9.09 10.09 0.017581 0 0 0 1.0061 1 4747 4747 0 0 1 + 58388 24199 38976 39857 68064 68064 -0.06712683372836636 SHGLVRTK 8 Unmodified _SHGLVRTK_ 0 0 0 REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF REV__ENST00000360772.7_2_3:123332334-123332625:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2673034667969 2 449.266876 896.519199 -0.19847 -8.9168E-05 0.55837 0.00025086 0.3599 0.00016169 449.26732942252903 103.22 0.18633 103.18 103.07 103.26 -0.047928 10 7 2 0 0 0 0.80992 1 57343 57343 0.69038 0 1 1130100 + 58389 25914 38977 39858 68065 68065 0.06680026711478604 SHGNHEAPACF 11 Unmodified _SHGNHEAPACF_ 0 0 0 ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF ENST00000435880.6_1_2:70190354-70215932:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.2409057617188 2 585.243272 1168.47199 NaN NaN NaN NaN NaN NaN NaN 90.464 1 90.506 90.006 91.006 0.042175 0 0 0 0.93933 1 50324 50324 2.9952 0.69251 1 58390 13325 38978 39859 68066 68066 -0.10550620621870621 SHGWFWRWQKR 11 Unmodified _SHGWFWRWQKR_ 0 0 0 nc|ENSG00000179886|Q53EQ6-2|TIGD5;ENSG00000179886|ENST00000504548|TIGD5 nc|ENSG00000179886|Q53EQ6-2|TIGD5 nc|ENSG00000179886|Q53EQ6-2|TIGD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 787.3967895507812 2 787.399818 1572.78508 NaN NaN NaN NaN NaN NaN NaN 88.14 1 88.194 87.694 88.694 0.053352 0 0 0 0.94165 1 49029 49029 1.3295 1.0225 1 58391 8862 38979 39860 68067 68067 0.02160290553933919 SHHRLLSNW 9 Unmodified _SHHRLLSNW_ 0 0 0 nc|ENSG00000176927|A4FU69-6|EFCAB5;nc|ENSG00000176927|A4FU69-5|EFCAB5 nc|ENSG00000176927|A4FU69-6|EFCAB5 nc|ENSG00000176927|A4FU69-6|EFCAB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2997436523438 2 575.299239 1148.58392 0.63723 0.0003666 0.25684 0.00014776 0.89407 0.00051436 575.2994219648176 85.422 0.053757 84.921 84.91 84.964 -0.5015 13 10 2 0 0 0 0.46501 1 46756 46756 9.3831 0.035688 1 3738100 58392 16402 38980 39861 68068 68068 0.015576015174701752 SHHSQILY 8 Unmodified _SHHSQILY_ 0 0 0 REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7489929199219 2 492.748516 983.482479 -0.31487 -0.00015515 0.74132 0.00036529 0.42645 0.00021013 492.74871527976035 36.365 0.28027 36.116 35.952 36.232 -0.2497 25 12 3 0 0 0 0.48669 1 19052 19052 36.044 0 1 3817000 + 58393 29500 38981 39862 68069 68069 -0.009922699051003292 SHHSQILY 8 Unmodified _SHHSQILY_ 0 0 0 REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.24951171875 2 492.748516 983.482479 0.33788 0.00016649 0.30273 0.00014917 0.64061 0.00031566 492.7487875499339 40.155 0.40041 35.626 35.503 35.904 -4.5294 80 33 3 0 0 0 0.31612 2 23874 23874;24012 53.576 0 1 59454000 + 58394 29500 38981 39862 68070;68071 68070 -0.009922699051003292 SHHSQILY 8 Unmodified _SHHSQILY_ 0 0 0 REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP REV__nc|ENSG00000064692|Q9Y6H5-5|SNCAIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.24951171875 2 492.748516 983.482479 0.33788 0.00016649 0.30273 0.00014917 0.64061 0.00031566 492.7487875499339 40.155 0.40041 35.626 35.503 35.904 -4.5294 80 33 3 0 0 0 8.7369 1 23874 23874 53.576 0 1 59454000 + 58395 29500 38981 39862 68072 68072 -0.009922699051003292 SHIFIRRKKRL 11 Unmodified _SHIFIRRKKRL_ 0 0 0 REV__ENSG00000255501|ENST00000530950|CARD18 REV__ENSG00000255501|ENST00000530950|CARD18 MSMS AL20221201_MKP_PDAC_01 4 485.3137817382812 3 485.3124 1452.91537 NaN NaN NaN NaN NaN NaN NaN 103.21 1 97.03 96.53 97.53 -6.1757 0 0 0 0.94165 1 69213 69213 1.3296 1.2348 1 + 58396 24538 38982 39863 68073 68073 0.20702886552930977 SHIKMKPSV 9 Unmodified _SHIKMKPSV_ 0 0 0 REV__ENST00000494171.5_1_2:202212946-202216133:-|nuORF REV__ENST00000494171.5_1_2:202212946-202216133:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 513.79296875 2 513.791869 1025.56919 NaN NaN NaN NaN NaN NaN NaN 20.206 1 17.513 17.013 18.013 -2.693 0 0 0 0.6557 1 10754 10754 10.824 2.9138 1 + 58397 21284 38983 39864 68074 68074 0.05742393325112971 SHIMAIMH 8 Unmodified _SHIMAIMH_ 0 0 0 REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A MSMS AL20221201_MKP_PDAC_01 4 470.2279357910156 2 470.23059 938.446628 NaN NaN NaN NaN NaN NaN NaN 46.561 1 41.481 40.981 41.981 -5.0805 0 0 0 0.73801 1 28795 28795 26.341 5.8877 1 + 58398 21771 38984 39865 68075 68075 -0.02505766677961674 SHIMAIMH 8 Unmodified _SHIMAIMH_ 0 0 0 REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 470.2286682128906 2 470.23059 938.446628 0.38711 0.00018203 -2.5832 -0.0012147 -2.1961 -0.0010327 470.2287925736036 46.743 0.25098 41.663 41.604 41.855 -5.0805 74 45 3 0 0 0 8.7369 1 29063 29063 26.341 0 1 72926000 + 58399 21771 38984 39865 68076 68076 -0.02505766677961674 SHIQVQLELD 10 Unmodified _SHIQVQLELD_ 0 0 0 nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1 nc|ENSG00000124615|Q9NZB8-7|MOCS1 nc|ENSG00000124615|Q9NZB8-7|MOCS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2087097167969 3 394.543544 1180.6088 -0.075162 -2.9654E-05 -1.8377 -0.00072507 -1.9129 -0.00075473 394.5427455520608 17.025 0.18159 17.03 16.917 17.099 0.0050564 30 19 2 0 0 0 0.23993 1 8543 8543 1.7423 0.28716 1 790560 58400 3807 38985 39866 68077 68077 0.02572191809508695 SHISDLLGLI 10 Unmodified _SHISDLLGLI_ 0 0 0 REV__ENST00000312561.8_2_12:32123162-32123267:+|nuORF REV__ENST00000312561.8_2_12:32123162-32123267:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.26953125 2 534.308406 1066.60226 0.22772 0.00012167 3.247 0.0017349 3.4748 0.0018566 534.3099886367432 75.413 0.21078 75.459 75.346 75.557 0.045967 13 9 2 0 0 0 0.22667 1 41625 41625 6.7232 0 1 1206500 + 58401 25432 38986 39867 68078 68078 0.07162298648813703 SHKDWMDKC 9 Unmodified _SHKDWMDKC_ 0 0 0 ENST00000423089.1_1_21:39610151-39610568:-|nuORF ENST00000423089.1_1_21:39610151-39610568:-|nuORF ENST00000423089.1_1_21:39610151-39610568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2451782226562 2 575.244426 1148.4743 0.64398 0.00037045 0.86422 0.00049714 1.5082 0.00086759 575.2446265100041 84.846 0.30623 84.345 84.178 84.484 -0.50072 19 12 2 0 0 0 0.6149 1 46390 46390 0.45834 0 1 716420 58402 13126 38987 39868 68079 68079 -0.09399908208388297 SHKGKKDTSI 10 Unmodified _SHKGKKDTSI_ 0 0 0 nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11 nc|ENSG00000133392|P35749-4|MYH11 nc|ENSG00000133392|P35749-4|MYH11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8770141601562 3 367.540134 1099.59857 1.1537 0.00042404 -1.3557 -0.00049828 -0.20199 -7.4239E-05 367.5394547646936 28.161 0.76398 25.013 24.77 25.534 -3.1482 100 40 4 0 0 0 0.63399 1 15835 15835 5.4027 0.5057 1 63874000 58403 4510 38988 39869 68080 68080 0.052756288749378655 SHLALFPH 8 Unmodified _SHLALFPH_ 0 0 0 ENST00000503548.1_1_4:1379569-1379746:+|nuORF ENST00000503548.1_1_4:1379569-1379746:+|nuORF ENST00000503548.1_1_4:1379569-1379746:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2516784667969 2 461.250695 920.486836 0.17392 8.0219E-05 0.036335 1.676E-05 0.21025 9.6979E-05 461.2507489220272 45.327 0.24828 45.299 45.153 45.401 -0.028011 18 12 2 0 0 0 0.50586 1 24334 24334 34.187 0 1 20131000 58404 14471 38989 39870 68081 68081 0.023412393084754513 SHLALFPH 8 Unmodified _SHLALFPH_ 0 0 0 ENST00000503548.1_1_4:1379569-1379746:+|nuORF ENST00000503548.1_1_4:1379569-1379746:+|nuORF ENST00000503548.1_1_4:1379569-1379746:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 461.250695 920.486836 0.17392 8.0219E-05 0.036335 1.676E-05 0.21025 9.6979E-05 461.2507489220272 45.327 0.24828 45.299 45.153 45.401 -0.028011 0 0 NaN 34.187 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 20131000 58405 14471 38989 39870 0.023412393084754513 SHLHSPMYF 9 Unmodified _SHLHSPMYF_ 0 0 0 nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5;ENSG00000221888|ENST00000641256|OR1C1 nc|ENSG00000186092|Q8NH21|OR4F5 nc|ENSG00000186092|Q8NH21|OR4F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5079650878906 3 373.507777 1117.5015 -0.56175 -0.00020982 0.42549 0.00015892 -0.13626 -5.0894E-05 373.5079867100412 15.57 1.0378 15.556 15.331 16.369 -0.014067 876 373 4 0 0 0 0.54444 2 7768 7768;7951 2.7352 0.82882 1 14804000 58406 8615 38990 39871 68082;68083 68082 -0.05255056605710706 SHLLKTCL 8 Unmodified _SHLLKTCL_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;ENST00000495426.1_1_7:33545212-33573811:+|nuORF nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7589721679688 2 457.760038 913.505523 0.57112 0.00026144 -3.0163 -0.0013808 -2.4452 -0.0011193 457.75865362393415 43.589 0.15594 43.574 43.461 43.617 -0.015671 8 6 2 0 0 0 0.28079 1 23363 23363 57.471 10.55 1 7965300 58407 3642 38991 39872 68084 68084 0.04531032888007758 SHLPTVCKVT 10 Unmodified _SHLPTVCKVT_ 0 0 0 REV__ENSG00000102313|ENST00000218436|ITIH6 REV__ENSG00000102313|ENST00000218436|ITIH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2001953125 3 362.198831 1083.57467 0.085123 3.0832E-05 -0.74276 -0.00026903 -0.65764 -0.00023819 362.5329504305021 44.033 0.097031 44.011 43.932 44.029 -0.022064 9 6 2 0 0 0 0.65282 1 23595 23595 4.7159 0 1 27633000 + 58408 18233 38992 39873 68085 68085 0.036220721169229364 SHLRDYPTY 9 Unmodified _SHLRDYPTY_ 0 0 0 nc|ENSG00000126106|Q6P2H8-2|TMEM53;ENSG00000126106|ENST00000372237|TMEM53 nc|ENSG00000126106|Q6P2H8-2|TMEM53 nc|ENSG00000126106|Q6P2H8-2|TMEM53 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.749267578125 2 576.277638 1150.54072 0.78419 0.00045191 -3.357 -0.0019346 -2.5728 -0.0014827 576.2759323792707 60.401 0.26871 60.401 60.225 60.494 0 15 11 2 0 0 0 0.19205 1 33644 33644 14.838 3.198 1 778990 58409 3927 38993 39874 68086 68086 -0.028526330504973885 SHLSKNIPNHK 11 Unmodified _SHLSKNIPNHK_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.5699768066406 3 425.570316 1273.68912 -0.56638 -0.00024103 1.0052 0.00042778 0.4388 0.00018674 425.5706563779043 16.802 0.076723 16.803 16.764 16.841 0.0010529 35 19 2 0 0 0 0.74046 1 8300 8300 0.45452 0.046251 1 541570 58410 9728 38994 39875 68087 68087 0.06322097923225556 SHLSSCQYF 9 Unmodified _SHLSSCQYF_ 0 0 0 ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2305908203125 2 536.231842 1070.44913 0.2674 0.00014339 -1.0325 -0.00055367 -0.76512 -0.00041028 536.2307524795201 76.265 0.47171 76.265 76.043 76.514 0 64 19 5 0 0 0 0.49272 1 42384 42384 7.9102 0 1 3776600 58411 14233 38995 39876 68088 68088 -0.08327639739331971 SHLSSCQYF 9 Unmodified _SHLSSCQYF_ 0 0 0 ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.231842 1070.44913 0.2674 0.00014339 -1.0325 -0.00055367 -0.76512 -0.00041028 536.2307524795201 76.265 0.47171 76.265 76.043 76.514 0 -0.042816 -0.0004367 NaN 7.9102 64 19 5 NaN NaN NaN NaN 0 NaN NaN 0 3776600 58412 14233 38995 39876 -0.08327639739331971 SHLSSCQYF 9 Unmodified _SHLSSCQYF_ 0 0 0 ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF ENST00000489134.5_1_6:105607686-105609734:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.231842 1070.44913 -0.24172 -0.00012962 2.6628 0.0014279 2.4211 0.0012983 536.2333835363115 76.83 0.11182 76.351 76.276 76.388 -0.47945 0.042816 0.0035264 NaN 7.9102 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 312280 58413 14233 38995 39876 -0.08327639739331971 SHLTNHKVI 9 Unmodified _SHLTNHKVI_ 0 0 0 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 ENSG00000182141|ENST00000356929|ZNF708 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2018432617188 3 350.201452 1047.58253 1.2498 0.00043767 0.58834 0.00020604 1.8381 0.00064371 350.2016897356063 17.845 0.33298 15.258 15.106 15.439 -2.5866 105 31 4 0 0 0 0.20428 2 9291 9291;9400 18.373 0 1 31788000 58414 9021 38996 39877 68089;68090 68089 0.06063967428713113 SHLVLLAAFD 10 Unmodified _SHLVLLAAFD_ 0 0 0 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 ENSG00000080608|ENST00000397885|PUM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7825317382812 2 543.303124 1084.5917 0.042691 2.3194E-05 2.7634 0.0015014 2.8061 0.0015246 543.3044941584566 45.352 0.19449 45.324 45.207 45.401 -0.028015 14 9 2 0 0 0 0.22811 1 24333 24333 10.074 0 1 7309800 58415 1302 38997 39878 68091 68091 0.05278315994382865 SHMGEPPS 8 Unmodified _SHMGEPPS_ 0 0 0 REV__ENSG00000155495|ENST00000285879|MAGEC1 REV__ENSG00000155495|ENST00000285879|MAGEC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1795349121094 2 421.179078 840.343602 NaN NaN NaN NaN NaN NaN NaN 20.262 1 20.262 19.762 20.762 0 0 0 0 0.97444 1 10186 10186 2.5775 0 1 + 58416 21272 38998 39879 68092 68092 -0.0829555586491324 SHMWRRMM 8 Unmodified _SHMWRRMM_ 0 0 0 ENST00000535676.1_1_12:15103549-15103642:-|nuORF ENST00000535676.1_1_12:15103549-15103642:-|nuORF ENST00000535676.1_1_12:15103549-15103642:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.759765625 2 567.759523 1133.50449 NaN NaN NaN NaN NaN NaN NaN 13.803 1 13.811 13.311 14.311 0.0073986 0 0 0 0.97444 1 6817 6817 0 0 1 58417 14975 38999 39880 68093 68093 -0.05691828024168899 SHNEEWQHI 9 Unmodified _SHNEEWQHI_ 0 0 0 REV__ENST00000467204.1_1_1:155252337-155256975:+|nuORF REV__ENST00000467204.1_1_1:155252337-155256975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.8433837890625 3 393.844105 1178.51048 0.86168 0.00033937 -1.189 -0.00046829 -0.32733 -0.00012892 393.84386117472496 50.226 0.38467 49.834 49.607 49.992 -0.3923 70 18 5 0 0 0 0.48152 1 26957 26957 5.2969 0 1 37974000 + 58418 27426 39000 39881 68094 68094 -0.07162991715654243 SHNWNTLF 8 Unmodified _SHNWNTLF_ 0 0 0 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 ENSG00000122965|ENST00000261741|RBM19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2723388671875 2 509.740691 1017.46683 0.74045 0.00037744 -0.60425 -0.00030801 0.1362 6.9425E-05 509.7403613704646 49.58 0.2675 49.58 49.487 49.754 0 16 11 2 0 0 0 8.7369 1 27296 27296 8.5933 8.5933 1 2628200 58419 3671 39001 39882 68095 68095 -0.04120556422139998 SHPADYKP 8 Unmodified _SHPADYKP_ 0 0 0 ENST00000417203.5_2_2:70410049-70417791:-|nuORF;ENST00000457952.5_1_2:70417551-70417746:-|nuORF ENST00000417203.5_2_2:70410049-70417791:-|nuORF ENST00000417203.5_2_2:70410049-70417791:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7235412597656 2 457.721967 913.429381 NaN NaN NaN NaN NaN NaN NaN 50.072 1 50.072 49.572 50.572 0 0 0 0 0.93587 1 27586 27586 13.508 2.684 1 58420 13055 39002 39883 68096 68096 -0.030796476877753776 SHPLLSQSY 9 Unmodified _SHPLLSQSY_ 0 0 0 ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant;KANSL1|p.S678Efs*13|1|0.03|ENSG00000120071|chr17:46039860-46039873|TGGAAATGCAGGCT/-|frameshift_variant ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2612915039062 2 516.261456 1030.50836 -0.34008 -0.00017557 -0.077909 -4.0221E-05 -0.41798 -0.00021579 516.2617553229285 34.981 0.20774 34.981 34.864 35.072 0 16 10 2 0 0 0 0.32871 1 18469 18469 15.847 4.2069 1 3086700 58421 3495 39003 39884 68097 68097 -0.005674204534670935 SHPLLSQSY 9 Unmodified _SHPLLSQSY_ 0 0 0 ENSG00000120071|ENST00000432791|KANSL1;KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant;KANSL1|p.S678Efs*13|1|0.03|ENSG00000120071|chr17:46039860-46039873|TGGAAATGCAGGCT/-|frameshift_variant ENSG00000120071|ENST00000432791|KANSL1 ENSG00000120071|ENST00000432791|KANSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2621459960938 2 516.261456 1030.50836 -0.41469 -0.00021409 0.81768 0.00042213 0.40299 0.00020805 516.2618806713948 35.135 0.53477 34.913 34.553 35.087 -0.2224 49 23 4 0 0 0 0.2143 2 18353 18353;18461 21.747 9.2151 1 15240000 58422 3495 39003 39884 68098;68099 68098 -0.005674204534670935 SHPLPHAE 8 Unmodified _SHPLPHAE_ 0 0 0 REV__ENST00000335574.9_2_20:30154038-30157019:+|nuORF REV__ENST00000335574.9_2_20:30154038-30157019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2235412597656 2 444.222134 886.429715 0.5424 0.00024095 2.521 0.0011199 3.0634 0.0013608 444.2229382648512 52.22 0.20262 51.786 51.688 51.891 -0.43367 20 9 3 0 0 0 0.80311 1 28211 28211 4.756 1.8668 1 1350700 + 58423 25638 39004 39885 68100 68100 -0.01804227967920724 SHPLVLYSK 9 Unmodified _SHPLVLYSK_ 0 0 0 REV__ENST00000357484.9_1_15:90444856-90445030:-|nuORF REV__ENST00000357484.9_1_15:90444856-90445030:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7599487304688 2 522.297842 1042.58113 -0.077397 -4.0424E-05 -0.73022 -0.00038139 -0.80761 -0.00042181 522.2977131984771 54.615 0.23582 54.149 54.025 54.261 -0.46664 14 11 2 0 0 0 0.1474 1 29550 29550 28.487 14.581 1 2183600 + 58424 25854 39005 39886 68101 68101 0.061543333399413314 SHPPCGAP 8 Unmodified _SHPPCGAP_ 0 0 0 REV__nc|ENSG00000182287|P56377-2|AP1S2 REV__nc|ENSG00000182287|P56377-2|AP1S2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1698303222656 2 383.171056 764.327559 NaN NaN NaN NaN NaN NaN NaN 72.418 1 72.418 71.918 72.918 0 0 0 0 0.97444 1 40324 40324 0.79363 0 1 + 58425 29834 39006 39887 68102 68102 -0.06403217311174103 SHPQVVPL 8 Unmodified _SHPQVVPL_ 0 0 0 REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF REV__ENST00000483012.1_1_7:148516133-148534012:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.7197570800781 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 19.203 1 19.226 18.726 19.726 0.023106 0 0 0 0.95607 1 9670 9670 9.3474 0 1 + 58426 27733 39007 39888 68103 68103 0.04377819588614784 SHPTSLPPHSL 11 Unmodified _SHPTSLPPHSL_ 0 0 0 ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF ENST00000502875.1_1_4:141563950-141565549:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.8051147460938 2 586.806562 1171.59857 0.29123 0.0001709 0.98026 0.00057522 1.2715 0.00074612 586.8070812241696 61.063 0.30839 61.063 60.907 61.215 0 26 12 3 0 0 0 0.50515 1 34017 34017 16.149 1.7437 1 1379900 58427 14462 39008 39889 68104 68104 0.019636288749325104 SHQENEDRN 9 Unmodified _SHQENEDRN_ 0 0 0 nc|ENSG00000181798|Q8N535|LINC00471 nc|ENSG00000181798|Q8N535|LINC00471 nc|ENSG00000181798|Q8N535|LINC00471 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.736328125 2 564.736865 1127.45918 NaN NaN NaN NaN NaN NaN NaN 62.66 1 62.66 62.16 63.16 0 0 0 0 0.7818 1 34953 34953 6.7232 0 1 58428 16434 39009 39890 68105 68105 -0.0994536048037844 SHQTDSSWL 9 Unmodified _SHQTDSSWL_ 0 0 0 REV__ENST00000479322.1_1_1:218607587-218614701:+|nuORF REV__ENST00000479322.1_1_1:218607587-218614701:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 354.1598205566406 3 354.161322 1059.46214 NaN NaN NaN NaN NaN NaN NaN 53.606 1 47.802 47.302 48.302 -5.8042 0 0 0 0.7453 1 33903 33903 4.897 0 1 + 58429 17920 39010 39891 68106 68106 -0.06521485355551704 SHRLFSPF 8 Unmodified _SHRLFSPF_ 0 0 0 ENST00000462041.1_1_1:79093600-79097167:+|nuORF ENST00000462041.1_1_1:79093600-79097167:+|nuORF ENST00000462041.1_1_1:79093600-79097167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7610168457031 2 495.761426 989.5083 0.19845 9.8383E-05 -0.16838 -8.3476E-05 0.030068 1.4906E-05 495.7615406687813 45.314 0.23217 45.286 45.169 45.401 -0.028011 16 11 2 0 0 0 0.70294 1 24347 24347 16.942 0 1 6968800 58430 13669 39011 39892 68107 68107 0.013126243371857527 SHRVLAYL 8 Unmodified _SHRVLAYL_ 0 0 0 ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA ENSG00000155719|ENST00000646100|OTOA ENSG00000155719|ENST00000646100|OTOA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7776489257812 2 479.777077 957.5396 NaN NaN NaN NaN NaN NaN NaN 66.916 1 66.916 66.416 67.416 0 0 0 0 0.95607 1 37320 37320 9.3474 0 1 58431 6404 39012 39893 68108 68108 0.05913197371273782 SHRWKMQRNQF 11 Unmodified _SHRWKMQRNQF_ 0 0 0 REV__HLX|p.R328Q|1|0.27|ENSG00000136630|chr1:220884220-220884220|G/A|missense_variant REV__HLX|p.R328Q|1|0.27|ENSG00000136630|chr1:220884220-220884220|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.5895690917969 3 506.589604 1516.74698 0.3154 0.00015978 0.53466 0.00027085 0.85006 0.00043063 506.5897458279014 23.005 0.17609 23.023 22.94 23.116 0.01749 25 8 4 0 0 0 0.72131 1 11826 11826 2.2527 1.0379 1 20352000 + 58432 29383 39013 39894 68109 68109 0.00928036577010971 SHSGHPTA 8 Unmodified _SHSGHPTA_ 0 0 0 nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B nc|ENSG00000054523|O60333-3|KIF1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1838073730469 2 397.183009 792.351465 NaN NaN NaN NaN NaN NaN NaN 87.612 1 87.612 87.112 88.112 0 0 0 0 0.97444 1 48510 48510 0.69038 0 1 58433 16032 39014 39895 68110 68110 -0.05301660553141119 SHSKAEAVF 9 Unmodified _SHSKAEAVF_ 0 0 0 ENST00000481896.1_1_X:8503574-8504959:-|nuORF;ENSG00000011201|ENST00000262648|ANOS1 ENST00000481896.1_1_X:8503574-8504959:-|nuORF ENST00000481896.1_1_X:8503574-8504959:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2474060058594 2 488.248349 974.482145 0.70303 0.00034325 0.37543 0.0001833 1.0785 0.00052655 488.24844916698703 36.627 0.33054 36.627 36.487 36.818 0 33 15 3 0 0 0 0.10247 1 19415 19415 32.786 0 1 7598300 58434 438 39015 39896 68111 68111 -0.006116896249523052 SHSLPVPFF 9 Unmodified _SHSLPVPFF_ 0 0 0 ENST00000393295.7_1_3:128880030-128880126:-|nuORF ENST00000393295.7_1_3:128880030-128880126:-|nuORF ENST00000393295.7_1_3:128880030-128880126:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.771240234375 2 515.77146 1029.52837 0.77208 0.00039822 -0.14626 -7.5437E-05 0.62582 0.00032278 515.7713170004737 58.499 0.25057 58.438 58.254 58.505 -0.060719 29 12 3 0 0 0 0.095405 1 31820 31820 34.102 5.6156 1 8351600 58435 12702 39016 39897 68112 68112 0.014783752771336367 SHSLPVPFF 9 Unmodified _SHSLPVPFF_ 0 0 0 ENST00000393295.7_1_3:128880030-128880126:-|nuORF ENST00000393295.7_1_3:128880030-128880126:-|nuORF ENST00000393295.7_1_3:128880030-128880126:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7704467773438 2 515.77146 1029.52837 1.4011 0.00072267 -1.4586 -0.00075232 -0.057495 -2.9654E-05 515.7699255460328 64.338 0.35479 58.162 57.976 58.331 -6.1757 31 18 2 0 0 0 0.095405 1 41636 41636 34.102 0 1 13745000 58436 12702 39016 39897 68113 68113 0.014783752771336367 SHSPLWEL 8 Unmodified _SHSPLWEL_ 0 0 0 ENST00000554734.1_1_14:72943776-72943923:+|nuORF ENST00000554734.1_1_14:72943776-72943923:+|nuORF ENST00000554734.1_1_14:72943776-72943923:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7471008300781 2 484.745442 967.476331 NaN NaN NaN NaN NaN NaN NaN 27.431 1 27.431 26.931 27.931 0 0 0 0 0.93066 1 14132 14132 14.582 0 1 58437 15217 39017 39898 68114 68114 -0.008707881366376569 SHSVAQTGG 9 Unmodified _SHSVAQTGG_ 0 0 0 ENST00000538582.5_1_12:21590984-21591200:+|nuORF ENST00000538582.5_1_12:21590984-21591200:+|nuORF ENST00000538582.5_1_12:21590984-21591200:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2010803222656 2 422.201399 842.388245 NaN NaN NaN NaN NaN NaN NaN 17.673 1 17.673 17.173 18.173 0 0 0 0 0.85029 1 8727 8727 1.4819 0.68827 1 58438 15008 39018 39899 68115 68115 -0.039254087272183824 SHTCLQEAGI 10 Unmodified _SHTCLQEAGI_ 0 0 0 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 ENSG00000111961|ENST00000367467|SASH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2617797851562 2 529.750398 1057.48624 1.4716 0.0007796 1.4049 0.00074427 2.8766 0.0015239 529.7513260372434 62.902 1.4078 56.726 55.984 57.391 -6.1757 204 76 5 0 0 0 0.50944 1 40400 40400 15.847 0 1 399830000 58439 2847 39019 39900 68116 68116 -0.04019968193551904 SHTCLSHFIF 10 Unmodified _SHTCLSHFIF_ 0 0 0 ENST00000369155.3_1_1:149856928-149857078:-|nuORF ENST00000369155.3_1_1:149856928-149857078:-|nuORF ENST00000369155.3_1_1:149856928-149857078:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.285400390625 2 596.284408 1190.55426 NaN NaN NaN NaN NaN NaN NaN 48.742 1 48.371 47.871 48.871 -0.37172 0 0 0 0.78298 1 26170 26170 13.042 2.9685 1 58440 12299 39020 39901 68117 68117 -0.03339098542915053 SHTQYTPFTS 10 Unmodified _SHTQYTPFTS_ 0 0 0 ENSG00000170925|ENST00000302917|TEX13B ENSG00000170925|ENST00000302917|TEX13B ENSG00000170925|ENST00000302917|TEX13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1817016601562 3 390.180494 1167.51965 0.10991 4.2884E-05 3.0708 0.0011982 3.1807 0.0012411 390.51636321582953 66.08 0.20239 66.08 66.014 66.216 0 10 9 2 0 0 0 0.71276 1 36867 36867 0.62683 0 1 976450 58441 8045 39021 39902 68118 68118 -0.057406431500112376 SHTRTKML 8 Unmodified _SHTRTKML_ 0 0 0 REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7679138183594 2 487.266019 972.517485 0.35121 0.00017113 -1.521 -0.00074114 -1.1698 -0.00057001 487.26499590306275 68.786 0.61751 68.786 68.509 69.127 0 39 27 2 0 0 0 0.80624 1 38254 38254 2.8892 0 1 4459200 + 58442 21188 39022 39903 68119 68119 0.03012649631205022 SHTRTKML 8 Unmodified _SHTRTKML_ 0 0 0 REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF REV__ENST00000482518.6_1_2:229715274-230109633:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7679138183594 2 487.266019 972.517485 0.35121 0.00017113 -1.521 -0.00074114 -1.1698 -0.00057001 487.26499590306275 68.786 0.61751 68.786 68.509 69.127 0 39 27 2 0 0 0 8.7369 1 38254 38254 2.8892 0 1 4459200 + 58443 21188 39022 39903 68120 68120 0.03012649631205022 SHTWRSFSI 9 Unmodified _SHTWRSFSI_ 0 0 0 REV__ENST00000379066.5_1_2:37544226-37544932:-|nuORF REV__ENST00000379066.5_1_2:37544226-37544932:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1905517578125 3 374.189324 1119.54614 1.4964 0.00055994 1.2597 0.00047138 2.7562 0.0010313 374.18987551034644 19.304 0.34063 16.648 16.455 16.795 -2.6564 65 24 3 0 0 0 0.34999 1 10260 10260 10.151 0 1 31345000 + 58444 26277 39023 39904 68121 68121 -0.008849094679817426 SHVLVAHL 8 Unmodified _SHVLVAHL_ 0 0 0 REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.25927734375 2 438.25852 874.502486 -0.53944 -0.00023641 0.77169 0.0003382 0.23225 0.00010179 438.2585918274782 19.313 0.11162 19.336 19.273 19.384 0.023106 11 7 2 0 0 0 0.80143 1 9735 9735 5.7604 0.52976 1 197010 + 58445 23642 39024 39905 68122 68122 0.060215258255084336 SHVNLLSH 8 Unmodified _SHVNLLSH_ 0 0 0 ENSG00000161021|ENST00000292599|MAML1 ENSG00000161021|ENST00000292599|MAML1 ENSG00000161021|ENST00000292599|MAML1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.8853454589844 2 453.743234 905.471915 NaN NaN NaN NaN NaN NaN NaN 19.441 1 19.441 18.941 19.941 0 0 0 0 0.97444 1 9721 9721 3.9444 0 1 58446 6780 39025 39906 68123 68123 0.015397474404721834 SHVTIFEDDL 10 Unmodified _SHVTIFEDDL_ 0 0 0 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 REV__ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20221201_MKP_PDAC_01 4 392.5222473144531 3 392.524149 1174.55062 NaN NaN NaN NaN NaN NaN NaN 38.419 1 34.05 33.55 34.55 -4.3689 0 0 0 0.72101 1 22661 22661 15.739 5.9744 1 + 58447 20122 39026 39907 68124 68124 -0.029674898357598067 SHWADVHL 8 Unmodified _SHWADVHL_ 0 0 0 REV__ENST00000226230.7_1_17:26655043-26655094:+|nuORF REV__ENST00000226230.7_1_17:26655043-26655094:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.7343139648438 2 482.735409 963.456264 NaN NaN NaN NaN NaN NaN NaN 11.885 1 9.4031 8.9031 9.9031 -2.482 0 0 0 0.97444 1 5982 5982 2.5775 0 1 + 58448 24791 39027 39908 68125 68125 -0.026925390765882184 SHWFTVMI 8 Unmodified _SHWFTVMI_ 0 0 0 nc|ENSG00000138617|Q8N5Y8-3|PARP16;ENSG00000138617|ENST00000649807|PARP16;nc|ENSG00000138617|Q8N5Y8-2|PARP16 nc|ENSG00000138617|Q8N5Y8-3|PARP16 nc|ENSG00000138617|Q8N5Y8-3|PARP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7500915527344 2 510.752213 1019.48987 0.64032 0.00032704 -1.68 -0.00085807 -1.0397 -0.00053103 510.7517236593919 49.246 0.38772 49.246 49.194 49.582 0 30 17 2 0 0 0 0.72953 1 27169 27169 14.582 2.0501 1 5381800 58449 5070 39028 39909 68126 68126 -0.019092536290258977 SHYPCLTL 8 Unmodified _SHYPCLTL_ 0 0 0 REV__nc|ENSG00000175166|Q13200-2|PSMD2 REV__nc|ENSG00000175166|Q13200-2|PSMD2 MSMS AL20221201_MKP_PDAC_01 4 467.2627868652344 2 467.228571 932.442588 NaN NaN NaN NaN NaN NaN NaN 102.78 1 96.606 96.106 97.106 -6.1757 0 0 0 0.97444 1 68956 68956 2.5775 0 1 + 58450 22845 39029 39910 68127 68127 -0.026335329000403362 SIAASYPV 8 Unmodified _SIAASYPV_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.4263305664062 1 807.424696 806.417419 0.26776 0.00021619 1.474 0.0011901 1.7417 0.0014063 807.4257987222092 49.353 0.39889 49.353 49.042 49.441 0 30 18 2 0 0 0 0.40035 1 27135 27135 44.407 3.9584 1 2449900 58451 2709 39030 39911 68128 68128 0.006467355690460863 SIAAVLPKV 9 Unmodified _SIAAVLPKV_ 0 0 0 ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2921752929688 2 449.292028 896.569503 0.24364 0.00010947 -0.15067 -6.7697E-05 0.092965 4.1769E-05 449.29197817249985 59.639 0.30622 59.148 58.987 59.293 -0.49079 27 14 2 0 0 0 0.14 2 32428 32428;32533 29.082 12.139 1 2569600 58452 7775 39031 39912 68129;68130 68129 0.11708136316622131 SIAAVLPKV 9 Unmodified _SIAAVLPKV_ 0 0 0 ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2921142578125 2 449.292028 896.569503 0.74282 0.00033374 -0.64481 -0.00028971 0.098002 4.4031E-05 449.2917757768611 59.285 0.42764 59.232 58.992 59.42 -0.053059 40 21 2 0 0 0 0.14 2 32241 32241;32348 29.082 12.139 1 10657000 58453 7775 39031 39912 68131;68132 68131 0.11708136316622131 SIAAVLPKV 9 Unmodified _SIAAVLPKV_ 0 0 0 ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2930603027344 2 449.292028 896.569503 0.76763 0.00034489 0.22456 0.00010089 0.9922 0.00044579 449.29205878656217 65.14 0.71511 58.964 58.699 59.414 -6.1757 75 39 3 0 0 0 0.14 3 42147 42147;42279;42405 29.082 12.139 1 43083000 58454 7775 39031 39912 68133;68134;68135 68133 0.11708136316622131 SIADQYIVI 9 Unmodified _SIADQYIVI_ 0 0 0 REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2828063964844 2 511.281857 1020.54916 0.20981 0.00010727 -0.49977 -0.00025553 -0.28997 -0.00014825 511.28138572262225 65.106 0.30224 65.106 64.994 65.296 0 18 12 2 0 0 0 0.39863 1 36309 36309 12.532 0 1 961770 + 58455 20447 39032 39913 68136 68136 0.039709208661292905 SIAEEEHHL 9 Unmodified _SIAEEEHHL_ 0 0 0 nc|ENSG00000139973|Q17RD7-4|SYT16;nc|ENSG00000139973|Q17RD7-2|SYT16;ENSG00000139973|ENST00000683842|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 nc|ENSG00000139973|Q17RD7-4|SYT16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.280517578125 2 532.753995 1063.49344 1.1032 0.00058776 1.0767 0.00057364 2.18 0.0011614 532.7545920782784 94.61 0.64706 88.435 88.064 88.711 -6.1757 55 37 2 0 0 0 0.18521 1 62686 62686 11.64 11.64 1 10050000 58456 5201 39033 39914 68137 68137 -0.03576912321477721 SIAEVVHQL 9 Unmodified _SIAEVVHQL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7802124023438 2 498.279649 994.544745 0.5887 0.00029334 -0.74772 -0.00037257 -0.15901 -7.9234E-05 498.2794619152336 53.662 0.27149 53.662 53.525 53.797 0 23 12 2 0 0 0 0.028475 1 29738 29738 56.177 29.293 1 6453500 58457 8786 39034 39915 68138 68138 0.04725456443236453 SIAEVVHQL 9 Unmodified _SIAEVVHQL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2797241210938 2 498.279649 994.544745 0.17216 8.5782E-05 1.03 0.00051321 1.2021 0.00059899 498.28007234622197 54.138 0.21822 53.671 53.547 53.765 -0.46664 18 10 2 0 0 0 0.30202 1 29345 29345 17.113 2.2746 1 1685400 58458 8786 39034 39915 68139 68139 0.04725456443236453 SIAEVVHQL 9 Unmodified _SIAEVVHQL_ 0 0 0 nc|ENSG00000178950|O14976-2|GAK;ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF nc|ENSG00000178950|O14976-2|GAK nc|ENSG00000178950|O14976-2|GAK MSMS AL20221201_MKP_PDAC_01 4 498.2796936035156 2 498.279649 994.544745 NaN NaN NaN NaN NaN NaN NaN 60.12 1 54.005 53.505 54.505 -6.1147 0 0 0 0.010117 1 38666 38666 92.491 38.659 1 58459 8786 39034 39915 68140 68140 0.04725456443236453 SIAFMNKAGH 10 Unmodified _SIAFMNKAGH_ 0 0 0 REV__ENSG00000143971|ENST00000272342|ETAA1 REV__ENSG00000143971|ENST00000272342|ETAA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2473754882812 2 538.271301 1074.52805 0.53052 0.00028556 -4.4847 -0.002414 -3.9542 -0.0021284 538.2705622582873 72.787 0.32727 72.311 72.146 72.473 -0.47588 22 14 2 0 0 0 0.23489 1 39788 39788 8.7454 1.4562 1 768050 + 58460 20685 39035 39916 68141 68141 -0.006233677143654859 SIAKHKKFI 9 Unmodified _SIAKHKKFI_ 0 0 0 REV__ENSG00000182854|ENST00000332238|OR4F15 REV__ENSG00000182854|ENST00000332238|OR4F15 MSMS AL20221201_MKP_PDAC_01 4 536.337158203125 2 536.337301 1070.66005 NaN NaN NaN NaN NaN NaN NaN 106.38 1 100.2 99.701 100.7 -6.1757 0 0 0 0.85852 1 71208 71208 0.45834 0 1 + 58461 23300 39036 39917 68142 68142 0.12754605364898453 SIALWPAGI 9 Unmodified _SIALWPAGI_ 0 0 0 ENST00000498046.2_1_1:247151538-247171320:-|nuORF;ENST00000339986.7_1_1:247163345-247171320:-|nuORF ENST00000498046.2_1_1:247151538-247171320:-|nuORF ENST00000498046.2_1_1:247151538-247171320:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.2672119140625 2 464.268553 926.522553 NaN NaN NaN NaN NaN NaN NaN 46.021 1 41.067 40.567 41.567 -4.9549 0 0 0 0.20498 1 28353 28353 30.225 4.8255 1 58462 11956 39037 39918 68143 68143 0.056352767654857416 SIAQISLLL 9 Unmodified _SIAQISLLL_ 0 0 0 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 ENSG00000172742|ENST00000641962|OR4D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.3028564453125 2 479.302593 956.590633 0.6731 0.00032262 0.081476 3.9052E-05 0.75458 0.00036167 479.30258257911163 82.803 0.19931 82.305 82.203 82.402 -0.49751 11 8 2 0 0 0 0.41742 1 45332 45332 11.64 0 1 466530 58463 8249 39038 39919 68144 68144 0.11060101625491825 SIASEIDESIL 11 Unmodified _SIASEIDESIL_ 0 0 0 REV__ENSG00000151491|ENST00000281172|EPS8 REV__ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.80029296875 2 588.803351 1175.59215 0.36624 0.00021564 0.7658 0.0004509 1.132 0.00066655 588.8045872410605 63.758 0.38122 63.272 63.016 63.397 -0.48617 29 18 2 0 0 0 0.46578 1 34720 34720 18.146 4.2403 1 2517300 + 58464 21071 39039 39920 68145 68145 0.011376461329064114 SIAWWPNQIFL 11 Unmodified _SIAWWPNQIFL_ 0 0 0 REV__ENSG00000132874|ENST00000255226|SLC14A2 REV__ENSG00000132874|ENST00000255226|SLC14A2 MSMS AL20221201_MKP_PDAC_01 4 458.5794677734375 3 458.911679 1373.71321 NaN NaN NaN NaN NaN NaN NaN 38.046 1 33.678 33.178 34.178 -4.3689 0 0 0 0.93694 1 22394 22394 4.7159 0 1 + 58465 19888 39040 39921 68146 68146 0.04129938356891216 SICNGVPMV 9 Carbamidomethyl (C) _SIC(Carbamidomethyl (C))NGVPMV_ SIC(1)NGVPMV SIC(57)NGVPMV 0 1 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6;nc|ENSG00000167165|P19224-2|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000241635|P22309-2|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7347106933594 2 488.733163 975.451773 0.95297 0.00046575 -0.83152 -0.00040639 0.12145 5.9357E-05 488.7334166533059 63.57 0.38654 57.394 57.156 57.543 -6.1757 52 21 3 0 0 0 0.026094 1 41072 41072 57.471 28.985 1 20489000 58466 10696;7581;10680;16629;10684;16628 39041 39922 68147 68147 731 -0.036935076059990024 SICNGVPMV 9 Carbamidomethyl (C),Oxidation (M) _SIC(Carbamidomethyl (C))NGVPM(Oxidation (M))V_ SIC(1)NGVPMV SICNGVPM(1)V SIC(61)NGVPMV SICNGVPM(61)V 0 1 1 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6;nc|ENSG00000167165|P19224-2|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7;nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5;nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4;nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3;nc|ENSG00000288702|P35503|UGT1A3 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000241119|O60656-2|UGT1A9;nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000241635|P22309-2|UGT1A1;nc|ENSG00000288702|P35503-3|UGT1A3 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MSMS AL20221201_MKP_PDAC_01 4 496.7313842773438 2 496.73062 991.446687 NaN NaN NaN NaN NaN NaN NaN 53.304 1 47.5 47 48 -5.8042 0 0 0 0.04157 1 33673 33673 61.357 19.263 1 58467 10696;7581;10680;16629;10684;16628 39041 39923 68148 68148 731 1294 -0.04937811468619202 SICREWSF 8 Unmodified _SICREWSF_ 0 0 0 REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF REV__ENST00000284311.4_1_3:98251013-98251079:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.23681640625 2 514.236927 1026.4593 0.22375 0.00011506 0.46496 0.0002391 0.68872 0.00035416 514.2370213378385 77.941 0.3791 77.941 77.771 78.15 0 21 16 2 0 0 0 0.80143 1 43323 43323 5.7604 1.0044 1 559340 + 58468 25209 39042 39924 68149 68149 -0.05287032014075521 SICTHGSRCL 10 Unmodified _SICTHGSRCL_ 0 0 0 REV__ENST00000425327.6_2_3:118619838-118620162:-|nuORF REV__ENST00000425327.6_2_3:118619838-118620162:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7542724609375 2 538.752418 1075.49028 0.25246 0.00013601 1.3895 0.00074861 1.642 0.00088462 538.7533659549516 99.719 0.11411 93.544 93.474 93.588 -6.1757 11 6 2 0 0 0 0.33553 1 66492 66492 25.399 1.3787 1 22273000 + 58469 26891 39043 39925 68150 68150 -0.044442019714779235 SICYLSQQ 8 Unmodified _SICYLSQQ_ 0 0 0 REV__ENST00000558892.1_1_15:50731270-50736797:+|nuORF REV__ENST00000558892.1_1_15:50731270-50736797:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2474365234375 2 471.223485 940.432418 0.17094 8.0551E-05 -0.91806 -0.00043261 -0.74713 -0.00035206 471.223152763918 43.427 0.24503 43.427 43.3 43.545 0 17 11 2 0 0 0 8.7369 1 23571 23571 19.439 11.529 1 4258700 + 58470 28808 39044 39926 68151 68151 -0.04018140625260003 SIDTNSCDMF 10 Unmodified _SIDTNSCDMF_ 0 0 0 REV__ENST00000435641.5_1_6:6362566-6366679:-|nuORF REV__ENST00000435641.5_1_6:6362566-6366679:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.5924072265625 2 566.717907 1131.42126 0.26076 0.00014778 -2.8667 -0.0016246 -2.6059 -0.0014768 566.7162448835563 52.561 0.17307 52.561 52.423 52.596 0 10 7 2 0 0 0 0.22667 1 29074 29074 10.824 5.0921 1 2932200 + 58471 27020 39045 39927 68152 68152 -0.13919330781709505 SIDVELQQR 9 Unmodified _SIDVELQQR_ 0 0 0 ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565642.5_1_16:71777395-71799448:-|nuORF ENSG00000166747|ENST00000299980|AP1G1 ENSG00000166747|ENST00000299980|AP1G1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.6367797851562 2 544.290745 1086.56694 NaN NaN NaN NaN NaN NaN NaN 95.905 1 95.537 95.037 96.037 -0.36814 0 0 0 0.84564 1 52381 52381 2.0598 0.21551 1 58472 7526 39046 39928 68153 68153 0.027116361209891693 SIDYYNMF 8 Unmodified _SIDYYNMF_ 0 0 0 nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-15|OPRM1;nc|ENSG00000112038|P35372-12|OPRM1;nc|ENSG00000112038|P35372-14|OPRM1;nc|ENSG00000112038|P35372-13|OPRM1;nc|ENSG00000112038|P35372-11|OPRM1;nc|ENSG00000112038|P35372-2|OPRM1;nc|ENSG00000112038|P35372-8|OPRM1;ENSG00000112038|ENST00000330432|OPRM1;nc|ENSG00000112038|P35372-6|OPRM1;nc|ENSG00000112038|P35372-4|OPRM1;nc|ENSG00000112038|P35372-7|OPRM1;nc|ENSG00000112038|P35372-5|OPRM1;nc|ENSG00000112038|P35372-9|OPRM1;ENSG00000116329|ENST00000234961|OPRD1;nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000082556|ENST00000265572|OPRK1;nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000082556|P41145-2|OPRK1;nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.2982788085938 2 526.723318 1051.43208 0.50058 0.00026367 -2.2741 -0.0011978 -1.7735 -0.00093414 526.7218775645288 46.449 0.2789 41.369 41.143 41.422 -5.0805 29 20 2 0 0 0 8.7369 1 28553 28553 2.0598 0.21551 1 36319000 58473 16122;16121;1349 39047 39929 68154 68154 -0.09157560345124693 SIEDLHRGSN 10 Unmodified _SIEDLHRGSN_ 0 0 0 ENSG00000157827|ENST00000288670|FMNL2;nc|ENSG00000157827|Q96PY5|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 ENSG00000157827|ENST00000288670|FMNL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2769775390625 2 564.275626 1126.5367 NaN NaN NaN NaN NaN NaN NaN 48.658 1 48.286 47.786 48.786 -0.37172 0 0 0 0.71157 1 26121 26121 16.149 1.3108 1 58474 6543 39048 39930 68155 68155 -0.02150722544160999 SIEEQQKFT 9 Unmodified _SIEEQQKFT_ 0 0 0 REV__nc|ENSG00000038945|P21757-2|MSR1 REV__nc|ENSG00000038945|P21757-2|MSR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.8026123046875 2 555.277303 1108.54005 -0.78174 -0.00043408 -1.4052 -0.00078028 -2.1869 -0.0012144 555.2773812589375 32.366 0.19064 32.366 32.184 32.374 0 18 7 3 0 0 0 0.20358 1 16857 16857 10.074 0.6908 1 3250300 + 58475 17182 39049 39931 68156 68156 -0.009874724901919762 SIEEYLKLV 9 Unmodified _SIEEYLKLV_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.31005859375 2 547.310615 1092.60668 0.37321 0.00020426 0.47126 0.00025792 0.84447 0.00046219 547.3105296261992 86.236 0.38995 85.733 85.493 85.883 -0.50318 30 15 2 0 0 0 0.32871 1 47215 47215 15.847 3.3156 1 863820 58476 1153 39050 39932 68157 68157 0.0640776307170654 SIEHFSDNYL 10 Unmodified _SIEHFSDNYL_ 0 0 0 REV__nc|ENSG00000154358|Q5VST9-6|OBSCN REV__nc|ENSG00000154358|Q5VST9-6|OBSCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.857177734375 3 408.855899 1223.54587 0.29283 0.00011972 1.2063 0.00049322 1.4992 0.00061294 408.85633567975776 15.344 0.3248 12.817 12.722 13.047 -2.5273 91 70 2 0 0 0 0.69626 1 7836 7836 3.3196 0 1 3025700 + 58477 21226 39051 39933 68158 68158 -0.05696373978526026 SIEKETELDSL 11 Unmodified _SIEKETELDSL_ 0 0 0 TAX1BP1|p.A245S|1|0.18|ENSG00000106052|chr7:27785283-27785283|G/T|missense_variant TAX1BP1|p.A245S|1|0.18|ENSG00000106052|chr7:27785283-27785283|G/T|missense_variant TAX1BP1|p.A245S|1|0.18|ENSG00000106052|chr7:27785283-27785283|G/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8843994140625 3 421.882002 1262.62418 0.83532 0.00035241 3.0607 0.0012913 3.896 0.0016437 421.88313622561134 46.189 0.29163 41.234 41.064 41.355 -4.9549 30 19 2 0 0 0 0.56638 1 28425 28425 7.0371 0.41363 1 24348000 58478 30182 39052 39934 68159 68159 0.003370138160562419 SIENLVEVLDA 11 Unmodified _SIENLVEVLDA_ 0 0 0 REV__ENSG00000115464|ENST00000398571|USP34 REV__ENSG00000115464|ENST00000398571|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.318603515625 2 601.319168 1200.62378 -1.0042 -0.00060386 0.70435 0.00042354 -0.29987 -0.00018032 601.319275136416 32.917 0.21645 32.917 32.772 32.988 0 17 10 2 0 0 0 0.39848 1 17247 17247 21.59 6.3417 1 3200200 + 58479 18983 39053 39935 68160 68160 0.03149638886861794 SIEPLDCQSI 10 Unmodified _SIEPLDCQSI_ 0 0 0 REV__nc|ENSG00000140538|Q16288-5|NTRK3 REV__nc|ENSG00000140538|Q16288-5|NTRK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.76611328125 2 552.765714 1103.51688 1.1251 0.00062192 0.033123 1.8309E-05 1.1582 0.00064022 552.7656305109276 79.833 0.4849 79.344 79.075 79.56 -0.48932 69 20 4 0 0 0 0.67033 1 43830 43830 6.2058 0.97511 1 15965000 + 58480 20483 39054 39936 68161 68161 -0.030742345991711773 SIERPNDTLNA 11 Unmodified _SIERPNDTLNA_ 0 0 0 REV__ENST00000535170.5_1_7:99631970-99632105:+|nuORF REV__ENST00000535170.5_1_7:99631970-99632105:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 615.3115234375 2 615.309666 1228.60478 NaN NaN NaN NaN NaN NaN NaN 30.458 1 26.961 26.461 27.461 -3.497 0 0 0 0.76933 1 17194 17194 16.566 1.7276 1 + 58481 28518 39055 39937 68162 68162 -0.0003789768416027073 SIEYQWIQ 8 Unmodified _SIEYQWIQ_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.5616455078125 3 356.178313 1065.51311 1.5064 0.00053654 1.9032 0.00067789 3.4096 0.0012144 356.51306903943475 22.158 0.23132 19.423 19.274 19.505 -2.7348 23 12 3 0 0 0 8.7369 1 11837 11837 1.6526 0.58116 1 2065100 58482 1623 39056 39938 68163 68163 -0.017025363107222802 SIFCALITML 10 Unmodified _SIFCALITML_ 0 0 0 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 ENSG00000171155|ENST00000304661|C1GALT1C1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.8218383789062 2 556.298139 1110.58172 1.2878 0.0007164 -2.5367 -0.0014111 -1.2488 -0.00069473 556.7955557208029 86.353 0.11173 80.177 80.118 80.23 -6.1757 6 5 2 0 0 0 0.22149 1 56939 56939 20.454 2.3186 1 4817100 58483 8070 39057 39939 68164 68164 0.03085668673111286 SIFFFLSF 8 Unmodified _SIFFFLSF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7666625976562 2 504.265479 1006.51641 1.0753 0.00054225 -0.64029 -0.00032288 0.43503 0.00021937 504.265167701693 85.984 0.55435 79.809 79.581 80.136 -6.1757 51 30 2 0 0 0 0.61462 1 56543 56543 24.674 5.2349 1 9384500 + 58484 16785 39058 39940 68165 68165 0.013407585339450634 SIFFFLSF 8 Unmodified _SIFFFLSF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|59 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.7666625976562 2 504.265479 1006.51641 1.0753 0.00054225 -0.64029 -0.00032288 0.43503 0.00021937 504.265167701693 85.984 0.55435 79.809 79.581 80.136 -6.1757 51 30 2 0 0 0 8.7369 1 56543 56543 24.674 5.2349 1 9384500 + 58485 16785 39058 39940 68166 68166 0.013407585339450634 SIFHGEIDLL 10 Unmodified _SIFHGEIDLL_ 0 0 0 REV__ENST00000509635.5_1_4:83351811-83369104:+|nuORF REV__ENST00000509635.5_1_4:83351811-83369104:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.279052734375 2 572.305864 1142.59717 0.50302 0.00028788 -0.29408 -0.0001683 0.20894 0.00011958 572.3059135561045 58.144 0.1593 58.144 58.103 58.262 0 9 5 2 0 0 0 0.22149 1 32411 32411 10.074 3.3508 1 642520 + 58486 28130 39059 39941 68167 68167 0.031579947861928304 SIFKYTSI 8 Unmodified _SIFKYTSI_ 0 0 0 nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4 nc|ENSG00000205060|Q969S0-2|SLC35B4 nc|ENSG00000205060|Q969S0-2|SLC35B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7671508789062 2 479.765843 957.517133 0.26285 0.00012611 -0.49461 -0.0002373 -0.23175 -0.00011119 479.76555404909783 76.873 0.72768 76.873 76.514 77.242 0 124 40 4 0 0 0 0.80143 1 42907 42907 5.7604 0 1 29797000 58487 10344 39060 39942 68168 68168 0.03667553183004202 SIFLLLWHRL 10 Unmodified _SIFLLLWHRL_ 0 0 0 REV__nc|ENSG00000185920|Q13635-4|PTCH1 REV__nc|ENSG00000185920|Q13635-4|PTCH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.9300842285156 3 433.264164 1296.77066 0.68628 0.00029734 -0.063629 -2.7568E-05 0.62265 0.00026977 433.26416174793235 66.552 0.33307 60.376 60.156 60.489 -6.1757 29 18 2 0 0 0 0.23966 1 43211 43211 0.56317 0.1965 1 23172000 + 58488 23534 39061 39943 68169 68169 0.13414825353106608 SIFLRRPFP 9 Unmodified _SIFLRRPFP_ 0 0 0 ENST00000406539.6_1_12:123459581-123460450:+|nuORF;ENST00000535970.5_1_12:123459581-123462874:+|nuORF;ENST00000545056.5_1_12:123459581-123461448:+|nuORF;ENST00000538755.5_1_12:123459581-123462595:+|nuORF;ENST00000397389.6_1_12:123459581-123461448:+|nuORF;ENST00000545612.5_1_12:123459581-123463082:+|nuORF;ENST00000538628.5_1_12:123459581-123461705:+|nuORF ENST00000406539.6_1_12:123459581-123460450:+|nuORF ENST00000406539.6_1_12:123459581-123460450:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2259216308594 3 378.225709 1131.6553 0.91228 0.00034505 -1.424 -0.0005386 -0.51173 -0.00019355 378.2250914842778 17.454 0.24696 14.867 14.701 14.948 -2.5866 78 46 2 0 0 0 0.49766 1 9048 9048 7.609 0.50723 1 8248100 58489 12821 39062 39944 68170 68170 0.09473721222116183 SIFPHNVPD 9 Unmodified _SIFPHNVPD_ 0 0 0 REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4 REV__nc|ENSG00000146039|Q9Y2C5-2|SLC17A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2555541992188 2 513.256174 1024.49779 -0.34642 -0.0001778 0.35791 0.0001837 0.011491 5.8977E-06 513.2567188569178 32.98 0.29109 32.821 32.622 32.913 -0.15918 15 11 2 0 0 0 0.36964 1 17199 17199 13.906 2.2658 1 1597100 + 58490 20807 39063 39945 68171 68171 -0.013474031079113047 SIFPKEWL 8 Unmodified _SIFPKEWL_ 0 0 0 REV__ENSG00000100665|ENST00000557004|SERPINA4 REV__ENSG00000100665|ENST00000557004|SERPINA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2818603515625 2 510.28166 1018.54877 0.37015 0.00018888 -0.25145 -0.00012831 0.1187 6.0569E-05 510.2815123220939 19.782 0.14811 19.79 19.692 19.84 0.0078487 11 6 2 0 0 0 0.76266 1 10063 10063 11.64 0 1 829730 + 58491 18101 39064 39946 68172 68172 0.0402354593693417 SIFPRGVH 8 Unmodified _SIFPRGVH_ 0 0 0 REV__ENSG00000205403|ENST00000394634|CFI REV__ENSG00000205403|ENST00000394634|CFI MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2771606445312 2 456.756144 911.497735 4.4974 0.0020542 1.1583 0.00052908 5.6557 0.0025833 456.75599966142937 98.964 0.14127 98.936 98.833 98.975 -0.028282 7 4 2 0 0 0 8.7369 1 54941 54941 2.5775 1.7838 1 461730 + 58492 24226 39065 39947 68173 68173 0.03844641682758265 SIFSKCGLVCY 11 Unmodified _SIFSKCGLVCY_ 0 0 0 REV__BTN3A1|p.E388K|1|0.12|ENSG00000026950|chr6:26413312-26413312|G/A|missense_variant REV__BTN3A1|p.E388K|1|0.12|ENSG00000026950|chr6:26413312-26413312|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.296630859375 2 610.296127 1218.5777 0.97526 0.0005952 -0.31792 -0.00019403 0.65734 0.00040117 610.2963476247555 57.71 0.47267 57.644 57.418 57.89 -0.066036 98 23 6 0 0 0 0.58219 1 31328 31328 12.241 1.4167 1 149910000 + 58493 16749 39066 39948 68174 68174 -0.022844208205697214 SIGAYDLAM 9 Oxidation (M) _SIGAYDLAM(Oxidation (M))_ SIGAYDLAM(1) SIGAYDLAM(89) 0 0 1 REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3 REV__nc|ENSG00000163291|Q6TCH7-3|PAQR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.4401245117188 1 956.43936 955.432083 0.63746 0.00060969 -0.096248 -9.2056E-05 0.54121 0.00051764 956.4395525899986 63.281 0.3902 57.105 56.916 57.306 -6.1757 46 22 3 0 0 0 0.0086179 1 40953 40953 89.427 7.5627 1 36425000 + 58494 21743 39067 39949 68175 68175 1846 -0.047415603451327115 SIGHSHFQ 8 Unmodified _SIGHSHFQ_ 0 0 0 ENST00000479501.5_1_20:61926459-61943880:+|nuORF;ENSG00000101203|ENST00000358894|COL20A1;nc|ENSG00000101203|Q9P218-2|COL20A1;nc|ENSG00000101203|Q9P218-3|COL20A1 ENST00000479501.5_1_20:61926459-61943880:+|nuORF ENST00000479501.5_1_20:61926459-61943880:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 456.7435302734375 2 456.719759 911.424964 1.7964 0.00082045 2.6144 0.0011941 4.4108 0.0020145 456.72023963076583 41.8 0.13787 37.192 37.112 37.25 -4.6079 12 8 2 0 0 0 8.7369 1 25143 25143 13.508 0.97634 1 3197900 58495 1932 39068 39950 68176 68176 -0.034291121106662104 SIGKFWKS 8 Unmodified _SIGKFWKS_ 0 0 0 ENSG00000111728|ENST00000396037|ST8SIA1 ENSG00000111728|ENST00000396037|ST8SIA1 ENSG00000111728|ENST00000396037|ST8SIA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.76611328125 2 476.766178 951.517802 -0.22981 -0.00010957 0.14068 6.707E-05 -0.089137 -4.2497E-05 476.76624456960155 51.335 0.33313 51.281 51.107 51.44 -0.053871 41 16 3 0 0 0 0.58902 1 27839 27839 26.884 3.7352 1 14013000 58496 2822 39069 39951 68177 68177 0.04010392622706149 SIGLLPRNHD 10 Unmodified _SIGLLPRNHD_ 0 0 0 ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT ENSG00000196090|ENST00000373187|PTPRT ENSG00000196090|ENST00000373187|PTPRT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8529663085938 2 561.306729 1120.59891 0.52313 0.00029364 -0.70396 -0.00039514 -0.18082 -0.0001015 561.8078086632802 48.998 0.19477 48.626 48.499 48.693 -0.37172 16 9 2 0 0 0 0.22149 1 26347 26347 14.838 0 1 1069200 58497 9757 39070 39952 68178 68178 0.04343048594796528 SIGLPQYENHL 11 Unmodified _SIGLPQYENHL_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000185046|Q7Z6G8-6|ANKS1B;ENST00000552245.5_1_12:99225710-99548222:-|nuORF;nc|ENSG00000185046|Q7Z6G8-10|ANKS1B;nc|ENSG00000185046|Q7Z6G8-7|ANKS1B;nc|ENSG00000185046|Q7Z6G8-2|ANKS1B;nc|ENSG00000185046|Q7Z6G8-5|ANKS1B;nc|ENSG00000185046|Q7Z6G8-4|ANKS1B;nc|ENSG00000185046|Q7Z6G8-3|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2174682617188 3 424.21906 1269.63535 -0.52315 -0.00022193 -1.2248 -0.00051959 -1.748 -0.00074152 424.21775566924083 26.431 0.16518 26.431 26.323 26.488 0 17 7 3 0 0 0 0.69155 1 13579 13579 5.0475 0 1 1015600 58498 9324 39071 39953 68179 68179 0.011318807008365184 SIGLTYFQSSN 11 Unmodified _SIGLTYFQSSN_ 0 0 0 nc|ENSG00000188992|Q6XZB0-8|LIPI;nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI nc|ENSG00000188992|Q6XZB0-8|LIPI nc|ENSG00000188992|Q6XZB0-8|LIPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.29638671875 2 608.79586 1215.57717 0.075209 4.5787E-05 -0.25436 -0.00015486 -0.17915 -0.00010907 609.2969005919581 70.104 0.30424 69.625 69.472 69.777 -0.47903 35 17 3 0 0 0 0.65108 1 38330 38330 8.7454 1.1365 1 6379300 58499 9715 39072 39954 68180 68180 -0.02199800944413255 SIGSAGRGQI 10 Unmodified _SIGSAGRGQI_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2590026855469 2 473.259248 944.503943 NaN NaN NaN NaN NaN NaN NaN 54.977 1 54.977 54.477 55.477 0 0 0 0 0.92825 1 30533 30533 6.7232 0.96273 1 + 58500 22602 39073 39955 68181 68181 0.02947115123618005 SIHCEVCDHC 10 Unmodified _SIHCEVCDHC_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4782409667969 3 382.477271 1144.40998 0.41837 0.00016002 0.042915 1.6414E-05 0.46128 0.00017643 382.4777010729771 36.797 0.38967 36.797 36.588 36.977 0 94 18 7 0 0 0 0.71123 1 19594 19594 0.69767 0 1 11027000 58501 4239 39074 39956 68182 68182 -0.15644431356849964 SIHDREKER 9 Unmodified _SIHDREKER_ 0 0 0 REV__ENST00000519205.1_1_5:65473318-65474693:+|nuORF REV__ENST00000519205.1_1_5:65473318-65474693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5391235351562 3 390.538904 1168.59488 -0.56533 -0.00022078 0.4031 0.00015743 -0.16223 -6.3356E-05 390.53906669390256 18.239 0.10064 18.239 18.192 18.292 0 36 15 3 0 0 0 0.54444 1 9050 9050 2.7352 0.23671 1 1560600 + 58502 21195 39075 39957 68183 68183 0.01732959101104825 SIHDREKER 9 Unmodified _SIHDREKER_ 0 0 0 REV__ENST00000519205.1_1_5:65473318-65474693:+|nuORF REV__ENST00000519205.1_1_5:65473318-65474693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5390319824219 3 390.538904 1168.59488 -0.53963 -0.00021074 0.56821 0.00022191 0.028588 1.1165E-05 390.53916559741083 18.19 0.10857 18.204 18.125 18.233 0.013865 27 17 2 0 0 0 0.54444 1 9091 9091 2.7352 0 1 1166200 + 58503 21195 39075 39957 68184 68184 0.01732959101104825 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.739990234375 2 523.269281 1044.52401 0.9988 0.00052264 -2.0167 -0.0010553 -1.0179 -0.00053264 523.268583777556 51.145 0.19277 51.145 51.085 51.278 0 12 8 2 0 0 0 0.18521 1 28218 28218 11.64 0 1 1964200 58504 313 39076 39958 68185 68185 0.0035286606357658457 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7974243164062 2 523.269281 1044.52401 -0.17106 -8.9509E-05 -1.6138 -0.00084443 -1.7848 -0.00093394 523.2659851648434 51.591 0.18596 51.158 51.061 51.247 -0.43367 18 9 3 0 0 0 0.1474 1 27822 27822 28.487 5.3384 1 1385900 58505 313 39076 39958 68186 68186 0.0035286606357658457 SIHDVTFQV 9 Unmodified _SIHDVTFQV_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 523.269281 1044.52401 1.0621 0.00055576 -2.3806 -0.0012457 -1.3185 -0.00068991 523.2683640062212 57.427 0.053635 51.4 51.356 51.41 -6.0275 0.16568 -0.00028931 NaN 15.847 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 6430000 58506 313 39076 39958 0.0035286606357658457 SIHEYPKYQAE 11 Unmodified _SIHEYPKYQAE_ 0 0 0 nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2;ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;ENSG00000104974|ENST00000251372|LILRA1 nc|ENSG00000131042|Q8N423-4|LILRB2 nc|ENSG00000131042|Q8N423-4|LILRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 682.8259887695312 2 682.827692 1363.64083 0.32561 0.00022234 -3.5809 -0.0024451 -3.2553 -0.0022228 682.8235166829296 59.98 0.33013 59.98 59.923 60.254 0 24 14 3 0 0 0 0.69316 1 33447 33447 4.897 0.36815 1 1878000 58507 4290 39077 39959 68187 68187 -0.02644440507310719 SIHPQLLVL 9 Unmodified _SIHPQLLVL_ 0 0 0 ENST00000419457.1_1_13:29297015-29297114:-|nuORF ENST00000419457.1_1_13:29297015-29297114:-|nuORF ENST00000419457.1_1_13:29297015-29297114:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3173217773438 2 510.316035 1018.61752 1.1466 0.00058514 0.34102 0.00017403 1.4876 0.00075917 510.3161185539797 70.613 0.386 70.649 70.424 70.81 0.035515 32 17 2 0 0 0 0.07087 1 38937 38937 39.95 0 1 3772300 58508 13089 39078 39960 68188 68188 0.10895210236662933 SIHQYMYF 8 Unmodified _SIHQYMYF_ 0 0 0 REV__nc|ENSG00000165929|Q8N9U0-2|TC2N REV__nc|ENSG00000165929|Q8N9U0-2|TC2N MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7479248046875 2 544.747127 1087.4797 NaN NaN NaN NaN NaN NaN NaN 75.778 1 75.778 75.278 76.278 0 0 0 0 0.97444 1 42145 42145 2.8892 0.58649 1 + 58509 22065 39079 39961 68189 68189 -0.06053861354280343 SIHRTNCLI 9 Unmodified _SIHRTNCLI_ 0 0 0 REV__ENSG00000082212|ENST00000321341|ME2 REV__ENSG00000082212|ENST00000321341|ME2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7858276367188 2 528.784576 1055.5546 0.27545 0.00014565 1.4188 0.00075025 1.6943 0.00089591 528.7853102889308 98.181 0.36102 97.988 97.823 98.184 -0.19321 30 12 3 0 0 0 0.48152 1 53676 53676 8.5933 1.8701 1 3437800 + 58510 17704 39080 39962 68190 68190 0.029043211769703703 SIHRTNCLI 9 Unmodified _SIHRTNCLI_ 0 0 0 REV__ENSG00000082212|ENST00000321341|ME2 REV__ENSG00000082212|ENST00000321341|ME2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 528.784576 1055.5546 0.39937 0.00021118 0.09888 5.2286E-05 0.49825 0.00026346 528.7848809279826 97.905 0.22203 97.905 97.789 98.012 0 -0.041331 -0.0011591 NaN 8.5933 15 7 3 NaN NaN NaN NaN 0 NaN NaN 0 375590 + 58511 17704 39080 39962 0.029043211769703703 SIHSYQNHF 9 Unmodified _SIHSYQNHF_ 0 0 0 REV__ENSG00000105088|ENST00000264833|OLFM2 REV__ENSG00000105088|ENST00000264833|OLFM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1785278320312 3 378.177195 1131.50976 NaN NaN NaN NaN NaN NaN NaN 28.436 1 28.373 27.873 28.873 -0.062159 0 0 0 0.57317 1 14680 14680 8.7454 0 1 + 58512 18399 39081 39963 68191 68191 -0.050737863647327686 SIIFMYLQPA 10 Unmodified _SIIFMYLQPA_ 0 0 0 ENSG00000196242|ENST00000641802|OR2C3 ENSG00000196242|ENST00000641802|OR2C3 ENSG00000196242|ENST00000641802|OR2C3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8795471191406 3 394.879099 1181.61547 NaN NaN NaN NaN NaN NaN NaN 27.083 1 27.051 26.551 27.551 -0.031708 0 0 0 0.57388 1 13949 13949 22.658 6.3835 1 58513 9787 39082 39964 68192 68192 0.03192413436545394 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.3141174316406 2 500.313492 998.612431 -0.039112 -1.9568E-05 0.73045 0.00036546 0.69134 0.00034589 500.31382977331947 78.846 0.46312 78.36 78.111 78.574 -0.48596 61 18 4 0 0 0 0.015688 2 43127 43127;43224 67.838 11.661 1 28965000 58514 8229 39083 39965 68193;68194 68193 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3141784667969 2 500.313492 998.612431 0.32794 0.00016407 -0.1504 -7.5247E-05 0.17754 8.8827E-05 500.3133316424433 78.259 0.64179 78.311 78.063 78.704 0.052452 91 26 5 0 0 0 0.024189 3 43122 43122;43230;43341 59.368 11.62 1 363250000 58515 8229 39083 39965 68195;68196;68197 68195 0.11306906374034043 SIIGRLLEV 9 Unmodified _SIIGRLLEV_ 0 0 0 ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA ENSG00000172531|ENST00000376745|PPP1CA MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.6194458007812 1 999.619707 998.612431 0.78339 0.00078309 0.303 0.00030289 1.0864 0.001086 999.6196929383383 99.239 0.12225 93.063 92.99 93.113 -6.1757 12 6 2 0 0 0 0.0087224 1 66001 66001 107.1 28.372 1 55396000 58516 8229 39083 39965 68198 68198 0.11306906374034043 SIINEDVIIN 10 Unmodified _SIINEDVIIN_ 0 0 0 ENST00000507415.1_1_5:138699473-138699677:+|nuORF;ENST00000510409.1_1_5:138699473-138700456:+|nuORF;ENSG00000120727|ENST00000265192|PAIP2 ENST00000507415.1_1_5:138699473-138699677:+|nuORF ENST00000507415.1_1_5:138699473-138699677:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.3087158203125 2 565.308603 1128.60265 0.29782 0.00016836 1.433 0.00081007 1.7308 0.00097843 565.3094880922109 78.063 0.39046 78.063 77.878 78.268 0 41 16 3 0 0 0 0.49559 1 43336 43336 25.399 1.3787 1 3007700 58517 14536 39084 39966 68199 68199 0.04349673578008151 SIIPHDYLVLE 11 Unmodified _SIIPHDYLVLE_ 0 0 0 REV__TBR1|p.H35Y|1|0.17|ENSG00000136535|chr2:161416513-161416513|C/T|missense_variant REV__TBR1|p.H35Y|1|0.17|ENSG00000136535|chr2:161416513-161416513|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.356201171875 2 649.853178 1297.6918 -0.028586 -1.8577E-05 0.78251 0.00050851 0.75392 0.00048994 649.8535011494479 88.995 0.34592 88.995 88.84 89.186 0 60 20 4 0 0 0 0.48615 1 49301 49301 17.113 6.9623 1 4145500 + 58518 30110 39085 39967 68200 68200 0.054865085375240596 SIIPILYRE 9 Unmodified _SIIPILYRE_ 0 0 0 REV__ENSG00000155085|ENST00000424296|AK9 REV__ENSG00000155085|ENST00000424296|AK9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8043823242188 2 552.326599 1102.63865 1.2757 0.00070461 2.8401 0.0015687 4.1158 0.0022733 552.3281583220081 70.978 0.34957 71.013 70.855 71.205 0.035515 33 15 3 0 0 0 0.1474 1 39163 39163 21.747 0 1 3165700 + 58519 21257 39086 39968 68201 68201 0.09143175545523263 SIITETFQTA 10 Unmodified _SIITETFQTA_ 0 0 0 REV__ENST00000542104.5_2_12:65090281-65090509:+|nuORF REV__ENST00000542104.5_2_12:65090281-65090509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7890625 2 555.787504 1109.56045 0.61852 0.00034377 1.2832 0.00071321 1.9018 0.001057 555.7882389495794 93.238 0.95133 92.78 92.56 93.511 -0.4574 124 43 6 0 0 0 0.42068 1 51057 51057 20.454 0 1 14699000 + 58520 28610 39087 39969 68202 68202 0.010056981696379808 SIIWRMLE 8 Unmodified _SIIWRMLE_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.816650390625 2 524.28642 1046.55829 3.7726 0.0019779 -2.1846 -0.0011454 1.588 0.00083255 524.2854999137893 98.503 0.38862 98.475 98.196 98.584 -0.028282 17 14 2 0 0 0 8.7369 1 54702 54702 19.439 0 1 350210 + 58521 19152 39088 39970 68203 68203 0.03686990950836844 SIKEPNITF 9 Unmodified _SIKEPNITF_ 0 0 0 REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7875366210938 2 524.787307 1047.56006 1.2145 0.00063736 0.054884 2.8802E-05 1.2694 0.00066616 524.7871963397516 59.192 0.60111 53.117 52.851 53.452 -6.0745 106 33 4 0 0 0 0.19361 1 38002 38002 19.257 0 1 516610000 + 58522 25453 39089 39971 68204 68204 0.03818323240398058 SIKLFLCVF 9 Unmodified _SIKLFLCVF_ 0 0 0 REV__ENST00000292433.3_1_19:13264947-13265175:+|nuORF REV__ENST00000292433.3_1_19:13264947-13265175:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.306396484375 2 535.309364 1068.60417 0.60183 0.00032216 -2.8967 -0.0015506 -2.2949 -0.0012285 535.3056285841876 85.747 0.91051 79.572 79.107 80.017 -6.1757 114 52 3 0 0 0 0.16226 5 56768 56235;56362;56500;56634;56768 26.884 8.7373 1 55804000 + 58523 25247 39090 39972 68205;68206;68207;68208;68209 68209 0.07261636133034699 SIKLYYTQ 8 Unmodified _SIKLYYTQ_ 0 0 0 REV__ENST00000247815.8_1_12:66717785-66717878:+|nuORF REV__ENST00000247815.8_1_12:66717785-66717878:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3004455566406 2 508.276575 1014.5386 -0.047102 -2.3941E-05 1.1404 0.00057965 1.0933 0.00055571 508.27699917616405 51.382 0.19413 51.328 51.207 51.401 -0.053871 14 9 2 0 0 0 8.7369 1 27745 27745 11.64 0 1 1543100 + 58524 24871 39091 39973 68210 68210 0.03190938211707817 SIKWACFDEP 10 Unmodified _SIKWACFDEP_ 0 0 0 REV__ENST00000418546.1_1_7:130569070-130596903:-|nuORF REV__ENST00000418546.1_1_7:130569070-130596903:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.1869201660156 3 399.186592 1194.53795 0.83637 0.00033387 1.887 0.00075326 2.7234 0.0010871 399.18720622499836 45.634 0.47444 40.679 40.477 40.951 -4.9549 42 31 2 0 0 0 0.64628 1 27954 27954 11.518 3.0736 1 9864800 + 58525 26805 39092 39974 68211 68211 -0.05154224499665361 SIKYLCIS 8 Unmodified _SIKYLCIS_ 0 0 0 REV__ENSG00000077585|ENST00000366592|GPR137B REV__ENSG00000077585|ENST00000366592|GPR137B MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.5073852539062 1 926.501566 925.494289 1.242 0.0011508 3.1745 0.0029411 4.4165 0.0040919 926.5045090321008 88.372 0.50357 82.196 81.889 82.392 -6.1757 65 27 4 0 0 0 0.5953 1 58272 58272 26.341 0 1 125120000 + 58526 17615 39093 39975 68212 68212 0.028562107938682857 SIKYLCIS 8 Unmodified _SIKYLCIS_ 0 0 0 REV__ENSG00000077585|ENST00000366592|GPR137B REV__ENSG00000077585|ENST00000366592|GPR137B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 926.4613037109375 1 926.501566 925.494289 1.242 0.0011508 3.1745 0.0029411 4.4165 0.0040919 926.5045090321008 88.372 0.50357 82.196 81.889 82.392 -6.1757 65 27 4 0 0 0 8.7369 1 58391 58391 26.341 0 1 125120000 + 58527 17615 39093 39975 68213 68213 0.028562107938682857 SILASLHAL 9 Unmodified _SILASLHAL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7803344726562 2 462.779285 923.544017 0.67496 0.00031236 0.17386 8.046E-05 0.84883 0.00039282 462.77935907665136 68.586 0.5675 68.611 68.397 68.964 0.025146 50 26 2 0 0 0 0.06187 1 37820 37820 42.095 6.0504 1 28291000 58528 3480 39094 39976 68214 68214 0.07918661794167292 SILDQVWNI 9 Unmodified _SILDQVWNI_ 0 0 0 ENSG00000145220|ENST00000343470|LYAR ENSG00000145220|ENST00000343470|LYAR ENSG00000145220|ENST00000343470|LYAR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2940063476562 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 95.533 1 95.537 95.037 96.037 0.004158 0 0 0 0.50124 1 53073 53073 15.847 0 1 58529 5677 39095 39977 68215 68215 0.031137256147076187 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2767333984375 2 478.276575 954.538597 0.36646 0.00017527 -0.028065 -1.3423E-05 0.3384 0.00016185 478.2765064006319 69.011 0.41366 69.011 68.764 69.177 0 49 17 4 0 0 0 0.0083087 2 38472 38375;38472 97.075 54.98 1 5031900 58530 4909 39096 39978 68216;68217 68217 0.0595093821170849 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.5433349609375 1 955.545874 954.538597 -0.037801 -3.6121E-05 0.11085 0.00010592 0.07305 6.9802E-05 955.5453481546414 68.974 0.26479 68.974 68.838 69.103 0 15 11 2 0 0 0 0.042911 1 38422 38422 48.346 14.243 1 725950 58531 4909 39096 39978 68218 68218 0.0595093821170849 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2771301269531 2 478.276575 954.538597 0.055437 2.6514E-05 0.78659 0.00037621 0.84203 0.00040272 478.2768718076842 69.485 0.43513 69.006 68.81 69.245 -0.47903 47 18 3 0 0 0 0.016184 2 37955 37955;38053 67.344 31.3 1 4250100 58532 4909 39096 39978 68219;68220 68219 0.0595093821170849 SILEAVPQV 9 Unmodified _SILEAVPQV_ 0 0 0 ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR ENSG00000137198|ENST00000259727|GMPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2763671875 2 478.276575 954.538597 0.8211 0.00039272 -0.5581 -0.00026693 0.26301 0.00012579 478.27630936732675 77.754 0.65653 71.579 71.117 71.773 -6.1757 67 37 2 0 0 0 0.0082281 4 50721 50592;50665;50721;50847 92.822 44.476 1 20250000 58533 4909 39096 39978 68221;68222;68223;68224 68223 0.0595093821170849 SILEDPPSI 9 Unmodified _SILEDPPSI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7587280273438 2 485.758215 969.501877 0.24275 0.00011792 2.6891 0.0013063 2.9319 0.0014242 485.75834354435733 63.919 0.64547 63.919 63.59 64.235 0 100 26 7 0 0 0 0.009483 3 35620 35524;35620;35725 81.89 6.9612 1 11192000 58534 868 39097 39979 68225;68226;68227 68226 0.015906415951349118 SILEDPPSI 9 Unmodified _SILEDPPSI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.5088500976562 1 970.509154 969.501877 0.14612 0.00014181 0.20231 0.00019634 0.34843 0.00033815 970.509468741714 63.936 0.68908 63.936 63.612 64.301 0 51 28 2 0 0 0 0.0082661 3 35635 35530;35635;35740 92.491 17.562 1 3032800 58535 868 39097 39979 68228;68229;68230 68229 0.015906415951349118 SILEDPPSI 9 Unmodified _SILEDPPSI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7584228515625 2 485.758215 969.501877 1.1454 0.00055639 0.27851 0.00013529 1.4239 0.00069168 485.75804718682383 71.665 0.4687 65.489 65.262 65.73 -6.1757 44 24 3 0 0 0 0.0036082 2 46796 46796;46934 123.45 7.7586 1 43845000 58536 868 39097 39979 68231;68232 68231 0.015906415951349118 SILEDPPSI 9 Unmodified _SILEDPPSI_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.5118408203125 1 970.509154 969.501877 0.87385 0.00084808 0.38619 0.0003748 1.26 0.0012229 970.5098547942168 71.679 0.29556 65.503 65.324 65.619 -6.1757 21 15 2 0 0 0 0.0036082 1 46807 46807 123.45 7.7586 1 17793000 58537 868 39097 39979 68233 68233 0.015906415951349118 SILEEEAGVW 10 Unmodified _SILEEEAGVW_ 0 0 0 ENST00000391911.5_1_1:209824529-209824649:-|nuORF ENST00000391911.5_1_1:209824529-209824649:-|nuORF ENST00000391911.5_1_1:209824529-209824649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7794189453125 2 566.779679 1131.5448 0.57479 0.00032578 -1.0588 -0.0006001 -0.484 -0.00027432 566.7789633154329 93.183 0.38054 92.726 92.599 92.98 -0.45741 26 16 2 0 0 0 0.63399 1 50927 50927 9.3831 0.63772 1 511010 58538 12658 39098 39980 68234 68234 -0.015705883474311122 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7980346679688 2 533.798206 1065.58186 -0.057012 -3.0433E-05 -2.6078 -0.001392 -2.6648 -0.0014225 533.7980703712468 48.363 0.4424 48.363 48.112 48.555 0 78 21 5 0 0 0 0.017075 2 26618 26506;26618 66.457 12.758 1 91256000 58539 2229 39099 39981 68235;68236 68236 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7982177734375 2 533.798206 1065.58186 0.30758 0.00016418 -3.5086 -0.0018729 -3.2011 -0.0017087 533.7979794126318 48.591 0.34739 48.22 48.002 48.35 -0.37172 57 18 4 0 0 0 0.0087873 1 26112 26112 103.35 21.463 1 31340000 58540 2229 39099 39981 68237 68237 0.05169127988983746 SILEHQIQV 9 Unmodified _SILEHQIQV_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7987670898438 2 533.798206 1065.58186 0.68758 0.00036703 0.092003 4.9111E-05 0.77958 0.00041614 533.7982068252393 54.652 0.48928 48.787 48.556 49.045 -5.8653 80 29 3 0 0 0 0.023481 2 34735 34596;34735 60.074 10.141 1 246460000 58541 2229 39099 39981 68238;68239 68239 0.05169127988983746 SILEIRETS 9 Unmodified _SILEIRETS_ 0 0 0 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2723999023438 2 524.287671 1046.56079 NaN NaN NaN NaN NaN NaN NaN 75.879 1 75.879 75.379 76.379 0 0 0 0 0.15618 1 42199 42199 36.044 0 1 58542 3897 39100 39982 68240 68240 0.039371178894725745 SILEIRETS 9 Unmodified _SILEIRETS_ 0 0 0 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2886962890625 2 524.287671 1046.56079 NaN NaN NaN NaN NaN NaN NaN 76.013 1 76.013 75.513 76.513 0 0 0 0 0.032808 1 42271 42271 65.235 0 1 58543 3897 39100 39982 68241 68241 0.039371178894725745 SILEIRETS 9 Unmodified _SILEIRETS_ 0 0 0 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 ENSG00000125848|ENST00000341420|FLRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2896728515625 2 524.287671 1046.56079 NaN NaN NaN NaN NaN NaN NaN 76.403 1 75.924 75.424 76.424 -0.47945 0 0 0 0.022863 1 41823 41823 74.929 0 1 58544 3897 39100 39982 68242 68242 0.039371178894725745 SILETVTAV 9 Unmodified _SILETVTAV_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.5310668945312 1 932.529889 931.522613 0.58411 0.0005447 0.44396 0.00041401 1.0281 0.00095871 932.5302807111873 67.331 0.37027 67.331 67.153 67.523 0 47 15 4 0 0 0 0.0083087 2 37587 37486;37587 97.075 19.09 1 12220000 58545 2662 39101 39983 68243;68244 68244 0.054112319748242044 SILETVTAV 9 Unmodified _SILETVTAV_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7689514160156 2 466.768583 931.522613 0.68895 0.00032158 0.20379 9.5124E-05 0.89275 0.00041671 466.768595058565 67.375 0.409 67.375 67.132 67.541 0 52 17 4 0 0 0 0.013472 2 37501 37501;37600 70.716 26.309 1 18312000 58546 2662 39101 39983 68245;68246 68245 0.054112319748242044 SILETVTAV 9 Unmodified _SILETVTAV_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7689819335938 2 466.768583 931.522613 0.55851 0.00026069 0.37628 0.00017564 0.93479 0.00043633 466.76867165883766 67.845 0.39616 67.363 67.142 67.538 -0.48218 46 17 4 0 0 0 0.023164 2 37020 37020;37117 60.39 19.941 1 9845800 58547 2662 39101 39983 68247;68248 68247 0.054112319748242044 SILETVTAV 9 Unmodified _SILETVTAV_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.5303955078125 1 932.529889 931.522613 0.56665 0.00052842 0.034629 3.2292E-05 0.60128 0.00056071 932.5298494152196 67.868 0.33291 67.386 67.165 67.498 -0.48219 36 14 3 0 0 0 0.0090851 1 37093 37093 85.357 18.013 1 5107300 58548 2662 39101 39983 68249 68249 0.054112319748242044 SILETVTAV 9 Unmodified _SILETVTAV_ 0 0 0 nc|ENSG00000109654|Q9C040|TRIM2;ENSG00000109654|ENST00000338700|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 nc|ENSG00000109654|Q9C040|TRIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.5317993164062 1 932.529889 931.522613 0.85582 0.00079808 -1.0359 -0.000966 -0.18007 -0.00016792 932.5296147453752 75.757 0.69788 69.582 69.235 69.932 -6.1757 63 37 2 0 0 0 0.012148 3 49519 49394;49519;49634 74.423 16.951 1 20261000 58549 2662 39101 39983 68250;68251;68252 68251 0.054112319748242044 SILEWLFI 8 Unmodified _SILEWLFI_ 0 0 0 REV__nc|ENSG00000205940|Q58FF8|HSP90AB2P REV__nc|ENSG00000205940|Q58FF8|HSP90AB2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7901916503906 2 510.791861 1019.56917 NaN NaN NaN NaN NaN NaN NaN 85.137 1 85.137 84.637 85.637 0 0 0 0 0.97348 1 47188 47188 5.7604 0 1 + 58550 29918 39102 39984 68253 68253 0.060167165967413894 SILHDVVEV 9 Unmodified _SILHDVVEV_ 0 0 0 ENSG00000091640|ENST00000206020|SPAG7;ENST00000572148.1_1_17:4863453-4863890:-|nuORF ENSG00000091640|ENST00000206020|SPAG7 ENSG00000091640|ENST00000206020|SPAG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7790222167969 2 505.779482 1009.54441 -0.25815 -0.00013057 -0.91081 -0.00046067 -1.169 -0.00059123 505.77899923219604 55.753 0.27332 55.753 55.631 55.904 0 85 28 4 0 0 0 0.016184 3 31040 30932;30961;31040 67.344 27.89 1 41583000 58551 1593 39103 39985 68254;68255;68256 68256 0.04002036723386482 SILHDVVEV 9 Unmodified _SILHDVVEV_ 0 0 0 ENSG00000091640|ENST00000206020|SPAG7;ENST00000572148.1_1_17:4863453-4863890:-|nuORF ENSG00000091640|ENST00000206020|SPAG7 ENSG00000091640|ENST00000206020|SPAG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7801513671875 2 505.779482 1009.54441 1.4287 0.0007226 1.6645 0.00084188 3.0932 0.0015645 505.78007284381687 62.979 0.52728 56.803 56.422 56.949 -6.1757 46 26 3 0 0 0 0.019303 1 40635 40635 64.236 30.134 1 32036000 58552 1593 39103 39985 68257 68257 0.04002036723386482 SILKAPPLGR 10 Unmodified _SILKAPPLGR_ 0 0 0 REV__ENST00000562945.2_1_16:34428784-34428826:-|nuORF REV__ENST00000562945.2_1_16:34428784-34428826:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8030395507812 2 526.334759 1050.65496 0.14597 7.6831E-05 -1.6863 -0.00088757 -1.5404 -0.00081074 526.3345405405886 76.001 0.18715 76.049 75.946 76.133 0.047951 11 7 2 0 0 0 0.22636 1 41905 41905 12.241 4.9514 1 1835000 + 58553 28864 39104 39986 68258 68258 0.13166301502269562 SILPTWPVL 9 Unmodified _SILPTWPVL_ 0 0 0 REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8068237304688 2 513.305136 1024.59572 0.92057 0.00047253 1.9694 0.0010109 2.8899 0.0014834 513.8070117824783 95.027 0.18287 88.852 88.748 88.931 -6.1757 14 9 2 0 0 0 0.37804 1 62959 62959 13.508 0.97634 1 8785100 + 58554 24767 39105 39987 68259 68259 0.08440405488067881 SILRGIFSV 9 Unmodified _SILRGIFSV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3008422851562 2 496.300384 990.586216 0.38595 0.00019155 -0.21416 -0.00010629 0.1718 8.5262E-05 496.30028630228225 75.013 0.53169 75.059 74.899 75.431 0.045959 50 25 3 0 0 0 0.018061 2 41324 41324;41428 65.474 25.524 1 27512000 58555 6889 39106 39988 68260;68261 68260 0.09054637202575577 SILRGIFSV 9 Unmodified _SILRGIFSV_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3010559082031 2 496.300384 990.586216 1.4803 0.00073466 -0.98998 -0.00049133 0.49029 0.00024333 496.3001581620649 98.135 0.16639 91.959 91.875 92.042 -6.1757 28 10 4 0 0 0 0.018061 1 65053 65053 65.474 29.347 1 187030000 58556 6889 39106 39988 68262 68262 0.09054637202575577 SILSWHVEL 9 Unmodified _SILSWHVEL_ 0 0 0 REV__ENSG00000161956|ENST00000321337|SENP3 REV__ENSG00000161956|ENST00000321337|SENP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8660278320312 3 361.865958 1082.57605 0.08855 3.2043E-05 0.074271 2.6876E-05 0.16282 5.8919E-05 361.8661164141979 45.673 0.22115 45.673 45.547 45.768 0 24 10 3 0 0 0 0.41742 1 24893 24893 7.609 3.7326 1 9036300 + 58557 21617 39107 39989 68263 68263 0.038060294773458736 SILSWHVEL 9 Unmodified _SILSWHVEL_ 0 0 0 REV__ENSG00000161956|ENST00000321337|SENP3 REV__ENSG00000161956|ENST00000321337|SENP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.865958 1082.57605 0.08855 3.2043E-05 0.074271 2.6876E-05 0.16282 5.8919E-05 361.8661164141979 45.673 0.22115 45.673 45.547 45.768 0 0 0 NaN 7.609 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 9036300 + 58558 21617 39107 39989 0.038060294773458736 SIMPRVSPN 9 Unmodified _SIMPRVSPN_ 0 0 0 REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7664489746094 2 500.765852 999.51715 0.41959 0.00021012 1.6017 0.00080209 2.0213 0.0010122 500.7678640220428 56.202 0.69457 50.225 49.805 50.5 -5.9769 121 40 4 0 0 0 0.19127 1 35669 35669 24.021 5.8742 1 98482000 + 58559 28621 39108 39990 68264 68264 0.017372299113503686 SIMQELYIA 9 Unmodified _SIMQELYIA_ 0 0 0 REV__ENST00000257290.9_1_4:55095371-55095452:+|nuORF REV__ENST00000257290.9_1_4:55095371-55095452:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2748413085938 2 534.275718 1066.53688 0.55025 0.00029399 -2.4814 -0.0013258 -1.9312 -0.0010318 534.2744889441182 82.484 0.28747 81.989 81.895 82.182 -0.4952 21 11 3 0 0 0 0.20428 1 45165 45165 22.736 0.98964 1 1571000 + 58560 24927 39109 39991 68265 68265 0.006275611314549678 SIMRKKRPHI 10 Unmodified _SIMRKKRPHI_ 0 0 0 ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF ENST00000528672.1_1_11:35223289-35229672:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.5928649902344 3 422.592286 1264.75503 NaN NaN NaN NaN NaN NaN NaN 80.84 1 74.664 74.164 75.164 -6.1757 0 0 0 0.94985 1 53041 53041 5.7834 1.3773 1 58561 14861 39110 39992 68266 68266 0.13324215564421138 SIMSVVTNTL 10 Unmodified _SIMSVVTNTL_ 0 0 0 nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7850952148438 2 532.78645 1063.55835 0.61213 0.00032613 2.9354 0.0015639 3.5475 0.0018901 532.7879295737573 36.881 0.40681 36.881 36.67 37.076 0 55 19 4 0 0 0 0.18021 1 19653 19653 36.127 4.8587 1 14671000 58562 9878 39111 39993 68267 68267 0.02910946160181993 SINAQRNAL 9 Unmodified _SINAQRNAL_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7729797363281 2 493.772522 985.530492 -0.25291 -0.00012488 0.30636 0.00015127 0.053452 2.6393E-05 493.7725974908246 23.633 0.30189 23.633 23.489 23.791 0 39 15 3 0 0 0 0.06294 2 12017 12017;12115 41.84 13.353 1 8566900 58563 6277 39112 39994 68268;68269 68268 0.03714804014953188 SINAQRNAL 9 Unmodified _SINAQRNAL_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7727661132812 2 493.772522 985.530492 0.55836 0.0002757 0.12696 6.2689E-05 0.68532 0.00033839 493.77255637864977 26.66 0.41919 23.709 23.502 23.921 -2.9511 59 21 4 0 0 0 0.011671 2 14772 14652;14772 75.761 31.903 1 65392000 58564 6277 39112 39994 68270;68271 68271 0.03714804014953188 SINCVHRDI 9 Unmodified _SINCVHRDI_ 0 0 0 nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B;ENST00000397497.8_2_8:27288866-27309154:+|nuORF nc|ENSG00000120899|Q14289-2|PTK2B nc|ENSG00000120899|Q14289-2|PTK2B MSMS AL20221201_MKP_PDAC_01 4 353.2037353515625 3 352.846681 1055.51821 NaN NaN NaN NaN NaN NaN NaN 23.816 1 20.989 20.489 21.489 -2.8273 0 0 0 0.82739 1 12914 12914 2.4985 0.65425 1 58565 3552 39113 39995 68272 68272 -0.007325557197418675 SINDFLSNNL 10 Unmodified _SINDFLSNNL_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7828979492188 2 568.782753 1135.55095 0.27275 0.00015513 -0.35932 -0.00020437 -0.086572 -4.9241E-05 568.7831452967306 43.334 0.23361 43.334 43.204 43.438 0 27 11 3 0 0 0 0.1942 1 23532 23532 34.402 0 1 12449000 58566 8860 39114 39996 68273 68273 -0.011400701159118398 SINGSLYIFR 10 Unmodified _SINGSLYIFR_ 0 0 0 nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 nc|ENSG00000124126|Q8TCU6-3|PREX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5494995117188 3 390.548629 1168.62406 1.327 0.00051827 -0.33757 -0.00013184 0.98947 0.00038643 390.5487790987682 91.626 0.43069 85.45 85.165 85.596 -6.1757 46 23 3 0 0 0 0.64628 1 60520 60520 5.0475 0 1 25231000 58567 3746 39115 39997 68274 68274 0.04649103397377985 SINLSLDDL 9 Unmodified _SINLSLDDL_ 0 0 0 ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13 ENSG00000071189|ENST00000428135|SNX13 ENSG00000071189|ENST00000428135|SNX13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2607727050781 2 495.261122 988.507691 1.07 0.00052991 -2.3924 -0.0011849 -1.3224 -0.00065495 495.25969518039284 81.712 0.53076 75.536 75.182 75.712 -6.1757 54 29 2 0 0 0 0.011968 2 53622 53489;53622 74.929 3.7954 1 21813000 58568 1053 39116 39998 68275;68276 68276 0.012977401068042127 SINRSPVTV 9 Unmodified _SINRSPVTV_ 0 0 0 REV__ENSG00000085465|ENST00000369732|OVGP1 REV__ENSG00000085465|ENST00000369732|OVGP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7783813476562 2 486.777274 971.539994 1.2374 0.00060236 -0.52182 -0.00025401 0.71562 0.00034835 486.7770622511369 37.616 0.469 33.247 32.987 33.456 -4.3689 63 27 3 0 0 0 0.15471 1 22008 22008 27.629 2.6378 1 63247000 + 58569 17751 39117 39999 68277 68277 0.05308572300475589 SIPAQDSSFDL 11 Unmodified _SIPAQDSSFDL_ 0 0 0 nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3 nc|ENSG00000067798|Q8IVL0-3|NAV3 nc|ENSG00000067798|Q8IVL0-3|NAV3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8551940917969 3 393.855787 1178.54553 NaN NaN NaN NaN NaN NaN NaN 21.998 1 21.998 21.498 22.498 0 0 0 0 0.93893 1 11174 11174 1.3296 0 1 58570 965 39118 40000 68278 68278 -0.03659793698352587 SIPDERLY 8 Unmodified _SIPDERLY_ 0 0 0 nc|ENSG00000020922|P49959-2|MRE11;ENSG00000020922|ENST00000323929|MRE11;nc|ENSG00000020922|P49959-3|MRE11 nc|ENSG00000020922|P49959-2|MRE11 nc|ENSG00000020922|P49959-2|MRE11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7330017089844 2 496.756007 991.497461 0.51701 0.00025683 0.79801 0.00039641 1.315 0.00065324 496.7569191656139 49.951 0.17493 49.951 49.812 49.986 0 12 7 2 0 0 0 8.7369 1 27450 27450 9.3474 0 1 903330 58571 522 39119 40001 68279 68279 0.0013717717223471482 SIPEHPDY 8 Unmodified _SIPEHPDY_ 0 0 0 REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.431884765625 1 957.431238 956.423961 0.025258 2.4183E-05 0.38026 0.00036407 0.40552 0.00038825 957.4315472999643 43.254 0.33322 43.254 43.065 43.399 0 50 16 4 0 0 0 0.35156 1 23517 23517 49.669 9.7192 1 38720000 + 58572 17315 39120 40002 68280 68280 -0.05599371270238862 SIPEHPDY 8 Unmodified _SIPEHPDY_ 0 0 0 REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF REV__ENST00000480809.5_1_3:185925300-186038248:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.430908203125 1 957.431238 956.423961 0.67246 0.00064384 0.2107 0.00020173 0.88316 0.00084557 957.431303078499 49.923 0.36452 44.384 44.201 44.565 -5.5391 37 22 2 0 0 0 0.5284 1 31153 31153 32.117 4.4882 1 20983000 + 58573 17315 39120 40002 68281 68281 -0.05599371270238862 SIPEKWVSSI 10 Unmodified _SIPEKWVSSI_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5450439453125 3 382.544885 1144.61282 0.62855 0.00024045 -0.69423 -0.00026557 -0.06568 -2.5126E-05 382.5447160346672 50.798 0.54879 50.384 50.092 50.64 -0.41351 45 26 2 0 0 0 0.66569 1 27328 27328 3.5871 0 1 2486000 + 58574 20399 39121 40003 68282 68282 0.04630281303229822 SIPEKWVSSI 10 Unmodified _SIPEKWVSSI_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.544885 1144.61282 0.62855 0.00024045 -0.69423 -0.00026557 -0.06568 -2.5126E-05 382.5447160346672 50.798 0.54879 50.384 50.092 50.64 -0.41351 0 0 NaN 3.5871 45 26 2 NaN NaN NaN NaN 0 NaN NaN 0 2486000 + 58575 20399 39121 40003 0.04630281303229822 SIPGSSSLVF 10 Unmodified _SIPGSSSLVF_ 0 0 0 ENST00000479413.1_1_9:74526474-74526639:+|nuORF ENST00000479413.1_1_9:74526474-74526639:+|nuORF ENST00000479413.1_1_9:74526474-74526639:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2665100097656 2 497.266207 992.517862 0.12393 6.1626E-05 -0.090677 -4.5091E-05 0.033252 1.6535E-05 497.26617159468094 66.309 0.37847 65.826 65.711 66.09 -0.48323 30 19 2 0 0 0 0.42068 1 36285 36285 20.454 0 1 4125300 58576 14036 39122 40004 68283 68283 0.02130347832053303 SIPKQEKL 8 Unmodified _SIPKQEKL_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.1712036132812 2 471.784567 941.554582 -0.33525 -0.00015816 0.30363 0.00014325 -0.031616 -1.4916E-05 471.7849669381848 34.663 0.17325 34.663 34.56 34.733 0 14 8 2 0 0 0 8.7369 1 18280 18280 9.3474 4.5914 1 1240000 58577 4555 39123 40005 68284 68284 0.08146644448606821 SIPKQKIWF 9 Unmodified _SIPKQKIWF_ 0 0 0 REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1 REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8941040039062 3 382.893848 1145.65972 1.2221 0.00046792 0.058244 2.2301E-05 1.2803 0.00049022 382.8938463435607 48.058 0.70694 42.824 42.435 43.142 -5.2339 95 42 3 0 0 0 0.41742 1 29716 29716 11.495 0.6952 1 24209000 + 58578 19191 39124 40006 68285 68285 0.09271185645025071 SIPLCFMYLV 10 Unmodified _SIPLCFMYLV_ 0 0 0 ENSG00000176893|ENST00000641926|OR51G2 ENSG00000176893|ENST00000641926|OR51G2 ENSG00000176893|ENST00000641926|OR51G2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8051147460938 2 593.305964 1184.59737 0.57716 0.00034244 4.0105 0.0023794 4.5877 0.0027219 593.8107860716334 83.393 0.45255 82.896 82.698 83.15 -0.49751 44 18 3 0 0 0 0.23862 1 45643 45643 3.9444 0.66309 1 1281400 58579 8630 39125 40007 68286 68286 0.012459551901656596 SIPLRHFF 8 Unmodified _SIPLRHFF_ 0 0 0 REV__ENST00000484048.1_1_3:23848730-23849168:+|nuORF REV__ENST00000484048.1_1_3:23848730-23849168:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7868347167969 2 508.787444 1015.56034 0.36732 0.00018689 0.082568 4.201E-05 0.44989 0.0002289 508.7873668067408 91.512 0.26869 91.512 91.346 91.615 0 30 16 2 0 0 0 0.80232 1 50565 50565 5.2307 0.47466 1 406030 + 58580 27753 39126 40008 68287 68287 0.05317787750948355 SIPLRPRWWV 10 Unmodified _SIPLRPRWWV_ 0 0 0 REV__ENST00000158762.7_1_17:7247034-7247237:+|nuORF REV__ENST00000158762.7_1_17:7247034-7247237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5899658203125 3 437.25578 1308.74551 0.36008 0.00015745 0.22688 9.9205E-05 0.58696 0.00025665 437.2557858252458 42.208 0.30111 42.199 42.08 42.381 -0.0088196 34 13 3 0 0 0 0.713 1 22562 22562 1.4551 0 1 22002000 + 58581 24711 39127 40009 68288 68288 0.10348770550535846 SIPLRPRWWV 10 Unmodified _SIPLRPRWWV_ 0 0 0 REV__ENST00000158762.7_1_17:7247034-7247237:+|nuORF REV__ENST00000158762.7_1_17:7247034-7247237:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5899658203125 3 437.25578 1308.74551 0.36008 0.00015745 0.22688 9.9205E-05 0.58696 0.00025665 437.2557858252458 42.208 0.30111 42.199 42.08 42.381 -0.0088196 34 13 3 0 0 0 0.23999 1 22562 22562 1.4551 0 1 22002000 + 58582 24711 39127 40009 68289 68289 0.10348770550535846 SIPNLSPD 8 Unmodified _SIPNLSPD_ 0 0 0 REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.42578125 1 842.425424 841.418148 0.016771 1.4128E-05 0.23028 0.00019399 0.24705 0.00020812 842.4256034464414 58.902 0.39613 58.902 58.699 59.095 0 37 17 3 0 0 0 0.23628 1 32836 32836 64.236 0 1 5799900 + 58583 17489 39128 40010 68290 68290 -0.008904697819048124 SIPRLNPKKV 10 Unmodified _SIPRLNPKKV_ 0 0 0 REV__ENSG00000174705|ENST00000311601|SH3PXD2B REV__ENSG00000174705|ENST00000311601|SH3PXD2B MSMS AL20221201_MKP_PDAC_01 4 576.3698120117188 2 576.36659 1150.71863 NaN NaN NaN NaN NaN NaN NaN 40.746 1 36.217 35.717 36.717 -4.5294 0 0 0 0.95736 1 24372 24372 5.2969 0.76802 1 + 58584 22810 39129 40011 68291 68291 0.1492966193934535 SIPSHSSEL 9 Unmodified _SIPSHSSEL_ 0 0 0 ENSG00000129197|ENST00000381209|RPAIN;nc|ENSG00000129197|Q86UA6-8|RPAIN;ENST00000571613.5_1_17:5329514-5335888:+|nuORF;ENST00000570883.5_1_17:5329514-5331594:+|nuORF ENSG00000129197|ENST00000381209|RPAIN ENSG00000129197|ENST00000381209|RPAIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7381591796875 2 478.737814 955.461075 -0.4534 -0.00021706 0.96108 0.0004601 0.50768 0.00024305 478.7383775466951 34.317 0.22753 34.317 34.175 34.402 0 22 11 2 0 0 0 0.16226 1 18046 18046 26.884 5.137 1 5493900 58585 4121 39130 40012 68292 68292 -0.018436997244748454 SIPSILVTT 9 Unmodified _SIPSILVTT_ 0 0 0 REV__nc|ENSG00000169876|Q685J3-2|MUC17 REV__nc|ENSG00000169876|Q685J3-2|MUC17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2475891113281 2 465.778951 929.543348 0.19711 9.1812E-05 0.15882 7.3975E-05 0.35593 0.00016579 465.77905330751474 58.942 0.16551 58.451 58.369 58.535 -0.49079 10 7 2 0 0 0 0.18521 1 32038 32038 16.942 0 1 439070 + 58586 22431 39131 40013 68293 68293 0.07575822354476713 SIPSNGRGSF 10 Unmodified _SIPSNGRGSF_ 0 0 0 REV__ENSG00000138115|ENST00000371270|CYP2C8 REV__ENSG00000138115|ENST00000371270|CYP2C8 MSMS AL20221201_MKP_PDAC_01 4 511.257568359375 2 511.256705 1020.49886 NaN NaN NaN NaN NaN NaN NaN 84.82 1 78.645 78.145 79.145 -6.1757 0 0 0 0.64375 1 55823 55823 19.257 2.3147 1 + 58587 20305 39132 40014 68294 68294 -0.010571887389914991 SIPSTVTTL 9 Unmodified _SIPSTVTTL_ 0 0 0 REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.513427734375 1 918.514239 917.506963 0.12282 0.00011281 -0.63714 -0.00058522 -0.51432 -0.00047241 918.5138234912705 56.735 0.35781 56.735 56.543 56.9 0 37 15 3 0 0 0 0.0082281 1 31598 31598 92.822 3.9185 1 9567600 + 58588 24773 39133 40015 68295 68295 0.04490945457757789 SIPSTVTTL 9 Unmodified _SIPSTVTTL_ 0 0 0 REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.5164794921875 1 918.514239 917.506963 0.24578 0.00022575 -0.21275 -0.00019541 0.03303 3.0338E-05 918.5141999733036 57.204 0.32219 56.715 56.579 56.901 -0.48974 31 14 3 0 0 0 0.0082281 1 31067 31067 92.822 3.9185 1 6256600 + 58589 24773 39133 40015 68296 68296 0.04490945457757789 SIPSTVTTL 9 Unmodified _SIPSTVTTL_ 0 0 0 REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF REV__ENST00000223357.7_1_7:44153920-44154019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5155029296875 1 918.514239 917.506963 0.79431 0.00072959 -0.2212 -0.00020318 0.57311 0.00052641 918.5142718431681 64.815 0.47179 58.639 58.396 58.868 -6.1757 52 25 3 0 0 0 0.0082281 1 42050 42050 92.822 3.9185 1 38708000 + 58590 24773 39133 40015 68297 68297 0.04490945457757789 SIPTDIYSM 9 Unmodified _SIPTDIYSM_ 0 0 0 ENST00000426820.6_3_1:114500854-114504987:+|nuORF ENST00000426820.6_3_1:114500854-114504987:+|nuORF ENST00000426820.6_3_1:114500854-114504987:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7431030273438 2 513.74425 1025.47395 0.42693 0.00021933 -3.6619 -0.0018813 -3.2349 -0.0016619 513.7436178156507 84.493 0.20079 83.993 83.841 84.042 -0.49962 11 8 2 0 0 0 0.54444 1 46253 46253 4.756 1.8668 1 304980 58591 13183 39134 40016 68298 68298 -0.03777004656603822 SIPTKETY 8 Unmodified _SIPTKETY_ 0 0 0 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 REV__nc|ENSG00000133706|Q9P2J5-3|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7446594238281 2 469.745108 937.475663 0.62544 0.0002938 -0.24495 -0.00011506 0.38049 0.00017873 469.7449227041805 59.586 0.33097 59.586 59.423 59.754 0 33 14 3 0 0 0 0.67481 1 33284 33284 19.439 1.304 1 8065300 + 58592 19932 39135 40017 68299 68299 0.00442372423674442 SIPVHPVG 8 Unmodified _SIPVHPVG_ 0 0 0 ENST00000529567.5_1_11:89372457-89431764:+|nuORF ENST00000529567.5_1_11:89372457-89431764:+|nuORF ENST00000529567.5_1_11:89372457-89431764:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.459228515625 1 805.456665 804.449388 -0.27608 -0.00022237 0.56205 0.00045271 0.28598 0.00023034 805.4573428599232 42.701 0.25306 42.394 42.296 42.549 -0.30682 16 10 2 0 0 0 0.61462 1 22682 22682 24.674 3.8027 1 6697300 58593 14873 39136 40018 68300 68300 0.039341480428561226 SIQADVCRERR 11 Unmodified _SIQADVCRERR_ 0 0 0 ENST00000328914.4_1_7:4804199-4804568:+|nuORF ENST00000328914.4_1_7:4804199-4804568:+|nuORF ENST00000328914.4_1_7:4804199-4804568:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.8462524414062 2 666.843684 1331.67282 NaN NaN NaN NaN NaN NaN NaN 49.696 1 49.304 48.804 49.804 -0.3923 0 0 0 0.91348 1 26730 26730 6.6304 1.7334 1 58594 11840 39137 40019 68301 68301 0.020246486948053644 SIQDLSLQ 8 Unmodified _SIQDLSLQ_ 0 0 0 REV__ENSG00000112246|ENST00000369208|SIM1 REV__ENSG00000112246|ENST00000369208|SIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2430419921875 2 452.242732 902.470912 0.80762 0.00036524 0.0568 2.5687E-05 0.86442 0.00039093 452.2427130406908 49.163 0.5642 43.766 43.458 44.022 -5.3961 89 36 3 0 0 0 0.21098 1 30800 30800 68.081 0 1 484990000 + 58595 18800 39138 40020 68302 68302 0.0157748828091826 SIQEQERQF 9 Unmodified _SIQEQERQF_ 0 0 0 REV__ENST00000333039.2_2_22:39215633-39216080:-|nuORF REV__ENST00000333039.2_2_22:39215633-39216080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7862548828125 2 582.785827 1163.5571 -0.21568 -0.0001257 -0.018124 -1.0563E-05 -0.23381 -0.00013626 582.7856313300125 71.35 0.30104 71.35 71.187 71.488 0 24 15 2 0 0 0 0.55144 1 39707 39707 4.3292 0 1 1521600 + 58596 25618 39139 40021 68303 68303 -0.018135518843791942 SIQFCCCC 8 Unmodified _SIQFCCCC_ 0 0 0 REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF REV__ENST00000606389.5_1_2:69691306-69691378:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 906.2967529296875 1 906.297663 905.290386 0.27133 0.00024591 -0.77885 -0.00070587 -0.50752 -0.00045996 906.2969592440857 38.082 0.63762 38.1 37.653 38.291 0.01704 46 29 2 0 0 0 0.80992 1 20076 20076 0.69038 0.69038 1 1501200 + 58597 29296 39140 40022 68304 68304 -0.1660471623512194 SIQGLYIFL 9 Unmodified _SIQGLYIFL_ 0 0 0 nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 nc|ENSG00000180264|Q7Z7M1|ADGRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3036499023438 2 527.302593 1052.59063 0.97104 0.00051203 0.55864 0.00029457 1.5297 0.0008066 527.3030345687827 101.35 0.12468 95.171 95.107 95.231 -6.1757 11 6 2 0 0 0 0.07916 1 67993 67993 37.974 1.9298 1 52673000 58598 8891 39141 40023 68305 68305 0.06644101625443 SIQLELDSV 9 Unmodified _SIQLELDSV_ 0 0 0 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2684631347656 2 502.268947 1002.52334 0.43248 0.00021722 -0.81705 -0.00041038 -0.38457 -0.00019316 502.2683004608056 79.862 0.2289 79.862 79.729 79.958 0 16 9 2 0 0 0 0.49272 1 44349 44349 7.9102 0 1 401310 58599 8721 39142 40024 68306 68306 0.022180266238592594 SIQLVEVP 8 Unmodified _SIQLVEVP_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 884.5079345703125 1 884.50876 883.501483 0.086364 7.639E-05 -0.42726 -0.00037792 -0.3409 -0.00030153 884.5084794414523 76.007 0.36253 76.007 75.812 76.174 0 29 16 2 0 0 0 0.24071 1 42203 42203 63.563 7.0216 1 4230100 58600 5127 39143 40025 68307 68307 0.055072666659384595 SIQMSHVLAR 10 Unmodified _SIQMSHVLAR_ 0 0 0 REV__ENSG00000180182|ENST00000324817|MED14 REV__ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.2094421386719 3 381.209731 1140.60736 0.48092 0.00018333 -2.3265 -0.00088689 -1.8456 -0.00070356 381.20882873701834 48.267 0.19187 47.895 47.791 47.983 -0.37172 14 9 2 0 0 0 0.64628 1 25908 25908 5.0475 1.2016 1 3648400 + 58601 23142 39144 40026 68308 68308 0.0426827923977271 SIQNMIEAF 9 Unmodified _SIQNMIEAF_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2597045898438 2 526.757692 1051.50083 0.81196 0.00042771 1.3341 0.00070274 2.146 0.0011304 527.2600932075886 56.437 0.26115 50.461 50.338 50.599 -5.9769 19 14 2 0 0 0 0.30202 1 36077 36077 17.113 2.2746 1 12860000 + 58602 19463 39145 40027 68309 68309 -0.022858960454186672 SIQQNIQYK 9 Unmodified _SIQQNIQYK_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1;ENST00000468700.1_1_3:23996209-24001320:+|nuORF;ENSG00000174738|ENST00000312521|NR1D2;ENST00000492552.5_1_3:23987629-24018907:+|nuORF ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3016967773438 2 561.301113 1120.58767 1.3543 0.00076016 0.0046345 2.6013E-06 1.3589 0.00076276 561.3012421524352 20.458 0.15684 17.765 17.705 17.862 -2.693 11 7 2 0 0 0 0.30202 1 10909 10909 17.113 0.96379 1 827210 58603 3944 39146 40028 68310 68310 0.03220226500661738 SIQRPIEPN 9 Unmodified _SIQRPIEPN_ 0 0 0 REV__ENST00000457283.3_1_16:30546485-30546593:+|nuORF REV__ENST00000457283.3_1_16:30546485-30546593:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1053.568115234375 1 1053.56873 1052.56146 0.004008 4.2227E-06 -0.45311 -0.00047738 -0.4491 -0.00047316 1053.566982942697 42.819 0.10986 42.509 42.458 42.568 -0.31039 7 4 2 0 0 0 0.55144 1 22778 22778 4.3292 0.38484 1 4546300 + 58604 27267 39147 40029 68311 68311 0.0372795732916984 SIQRPIEPN 9 Unmodified _SIQRPIEPN_ 0 0 0 REV__ENST00000457283.3_1_16:30546485-30546593:+|nuORF REV__ENST00000457283.3_1_16:30546485-30546593:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1053.56873 1052.56146 0.004008 4.2227E-06 -0.45311 -0.00047738 -0.4491 -0.00047316 1053.566982942697 42.819 0.10986 42.509 42.458 42.568 -0.31039 0 0 NaN 4.3292 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4546300 + 58605 27267 39147 40029 0.0372795732916984 SIQVPNQEF 9 Unmodified _SIQVPNQEF_ 0 0 0 nc|ENSG00000096088|P20142-2|PGC;ENSG00000096088|ENST00000373025|PGC nc|ENSG00000096088|P20142-2|PGC nc|ENSG00000096088|P20142-2|PGC MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2678833007812 2 531.266739 1060.51892 1.273 0.00067629 -0.60196 -0.0003198 0.67102 0.00035649 531.2658521267863 101.07 0.10672 94.899 94.85 94.956 -6.1757 8 5 2 0 0 0 0.32235 1 67784 67784 16.149 0.30192 1 16909000 58606 1669 39148 40030 68312 68312 -0.008914377990549838 SIREEWEAY 9 Unmodified _SIREEWEAY_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7737426757812 2 591.774928 1181.5353 -0.54625 -0.00032326 0.025763 1.5246E-05 -0.52049 -0.00030801 591.7759228001703 34.862 0.63077 34.862 34.695 35.326 0 72 30 5 0 0 0 0.10734 1 18365 18365 32.305 0 1 27813000 + 58607 17475 39149 40031 68313 68313 -0.048203566329675596 SIRERKMRQHY 11 Unmodified _SIRERKMRQHY_ 0 0 0 ENSG00000234828|ENST00000636793|IQCM ENSG00000234828|ENST00000636793|IQCM ENSG00000234828|ENST00000636793|IQCM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2730407714844 3 501.936893 1502.78885 0.91288 0.00045821 1.6471 0.00082674 2.56 0.001285 501.93860834947094 36.468 0.28189 36.468 36.388 36.67 0 20 13 2 0 0 0 0.69838 1 19360 19360 4.4062 0.28952 1 4976300 58608 10637 39150 40032 68314 68314 0.05756592265538529 SIRKEMKFEDL 11 Unmodified _SIRKEMKFEDL_ 0 0 0 REV__ENSG00000164604|ENST00000424100|GPR85 REV__ENSG00000164604|ENST00000424100|GPR85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2513427734375 3 465.914872 1394.72279 0.013165 6.1338E-06 4.3394 0.0020218 4.3526 0.0020279 465.9162270251152 25.507 0.14362 25.507 25.427 25.57 0 10 6 2 0 0 0 0.71618 1 13073 13073 1.1098 0 1 587760 + 58609 21928 39151 40033 68315 68315 0.04121338580102929 SIRKKAHY 8 Unmodified _SIRKKAHY_ 0 0 0 REV__nc|ENSG00000132872|Q9H2B2-2|SYT4 REV__nc|ENSG00000132872|Q9H2B2-2|SYT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2359619140625 2 501.795801 1001.57705 0.18206 9.1356E-05 -1.3226 -0.00066367 -1.1405 -0.00057232 501.7951162167951 64.739 0.23429 64.254 64.125 64.359 -0.48512 18 10 2 0 0 0 8.7369 1 35366 35366 9.3474 0.75416 1 696750 + 58610 19887 39152 40034 68316 68316 0.07632288636887097 SIRLQVVSI 9 Unmodified _SIRLQVVSI_ 0 0 0 REV__ENST00000340022.6_2_7:91874316-91874832:-|nuORF REV__ENST00000340022.6_2_7:91874316-91874832:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.8002014160156 2 507.818941 1013.62333 0.81017 0.00041142 1.4494 0.00073605 2.2596 0.0011475 507.81967656459506 49.779 0.298 44.24 44.079 44.377 -5.5391 27 18 2 0 0 0 0.18118 1 31075 31075 5.7319 1.7875 1 14038000 + 58611 25687 39153 40035 68317 68317 0.1170630874833023 SIRQLKMPL 9 Unmodified _SIRQLKMPL_ 0 0 0 REV__ENSG00000162989|ENST00000295101|KCNJ3 REV__ENSG00000162989|ENST00000295101|KCNJ3 MSMS AL20221201_MKP_PDAC_01 4 362.5558776855469 3 362.554838 1084.64269 NaN NaN NaN NaN NaN NaN NaN 24.811 1 21.928 21.428 22.428 -2.8831 0 0 0 0.82283 1 13532 13532 4.897 1.3005 1 + 58612 21714 39154 40036 68318 68318 0.10374941767577184 SIRRLSHCL 9 Unmodified _SIRRLSHCL_ 0 0 0 REV__nc|ENSG00000187010|Q02161-4|RHD REV__nc|ENSG00000187010|Q02161-4|RHD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.2440185546875 2 542.805842 1083.59713 1.2914 0.00070098 -2.5334 -0.0013752 -1.242 -0.00067418 543.3049914208334 59.022 0.34564 52.947 52.719 53.065 -6.0745 33 18 2 0 0 0 0.17666 1 37706 37706 19.439 5.9311 1 16033000 + 58613 29856 39155 40037 68319 68319 0.05867716305192516 SIRRSWRRLIL 11 Unmodified _SIRRSWRRLIL_ 0 0 0 ENST00000496738.5_1_1:156104620-156106879:+|nuORF ENST00000496738.5_1_1:156104620-156106879:+|nuORF ENST00000496738.5_1_1:156104620-156106879:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.9736938476562 3 485.972155 1454.89463 2.0524 0.00099743 1.4989 0.00072843 3.5513 0.0017259 486.30707080823584 93.646 0.32693 93.669 93.518 93.845 0.022987 29 12 3 0 0 0 0.69838 1 52061 52061 4.4062 3.0765 1 2675500 58614 14383 39156 40038 68320 68320 0.18538296173323943 SIRYEYTMY 9 Unmodified _SIRYEYTMY_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7830200195312 2 613.281531 1224.54851 0.4244 0.00026028 0.31709 0.00019446 0.74149 0.00045474 613.2820713330093 50.667 0.50504 50.667 50.433 50.938 0 42 27 3 0 0 0 0.32871 1 27989 27989 15.847 0 1 4875700 + 58615 17207 39157 40039 68321 68321 -0.05478241845230514 SISAVVMSY 9 Oxidation (M) _SISAVVM(Oxidation (M))SY_ SISAVVM(1)SY SISAVVM(42)SY 0 0 1 ENSG00000105583|ENST00000596731|WDR83OS;ENST00000598732.1_1_19:12779175-12779292:-|nuORF ENSG00000105583|ENST00000596731|WDR83OS ENSG00000105583|ENST00000596731|WDR83OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7386169433594 2 486.738968 971.463383 0.59378 0.00028902 -2.2376 -0.0010891 -1.6438 -0.0008001 486.7375869984954 49.454 0.30551 49.454 49.277 49.582 0 23 13 2 0 0 0 0.06187 1 27195 27195 42.095 15.211 1 3325800 58616 2338 39158 40040 68322 68322 406 -0.02348987311017936 SISCCIDPLI 10 Unmodified _SISCCIDPLI_ 0 0 0 ENSG00000181104|ENST00000319211|F2R ENSG00000181104|ENST00000319211|F2R ENSG00000181104|ENST00000319211|F2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2630004882812 2 532.261753 1062.50895 0.33039 0.00017586 1.824 0.00097085 2.1544 0.0011467 532.2624630049892 85.428 0.2916 85.428 85.242 85.533 0 19 11 2 0 0 0 0.6606 1 47309 47309 7.2892 0.93513 1 373260 58617 8952 39159 40041 68323 68323 -0.019800851202944614 SISFIKMVTQH 11 Unmodified _SISFIKMVTQH_ 0 0 0 REV__nc|ENSG00000109670|Q969H0-4|FBXW7 REV__nc|ENSG00000109670|Q969H0-4|FBXW7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.820068359375 2 645.847373 1289.68019 4.1989 0.0027119 -3.7512 -0.0024227 0.44774 0.00028917 646.3458045584747 98.722 0.13411 98.694 98.584 98.718 -0.028282 6 4 2 0 0 0 0.29134 1 54813 54813 12.241 4.0851 1 1206400 + 58618 29564 39160 40042 68324 68324 0.04693988242547675 SISFLCDEGF 10 Unmodified _SISFLCDEGF_ 0 0 0 nc|ENSG00000121904|Q7Z408|CSMD2;ENSG00000121904|ENST00000373381|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 nc|ENSG00000121904|Q7Z408|CSMD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2496337890625 2 559.247157 1116.47976 NaN NaN NaN NaN NaN NaN NaN 60.01 1 60.01 59.51 60.51 0 0 0 0 0.91523 1 33460 33460 7.2892 1.5288 1 58619 3609 39161 40043 68325 68325 -0.07381906144928507 SISGTVISLL 10 Unmodified _SISGTVISLL_ 0 0 0 REV__ENSG00000112462|ENST00000396806|OR12D3 REV__ENSG00000112462|ENST00000396806|OR12D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2981262207031 2 495.297507 988.580462 0.54301 0.00026895 0.29127 0.00014426 0.83428 0.00041322 495.2975070503491 49.814 0.27074 49.814 49.716 49.986 0 29 12 3 0 0 0 0.0045909 1 27423 27423 99.799 16.37 1 6043800 + 58620 18819 39162 40044 68326 68326 0.08571493900251426 SISGTVISLL 10 Unmodified _SISGTVISLL_ 0 0 0 REV__ENSG00000112462|ENST00000396806|OR12D3 REV__ENSG00000112462|ENST00000396806|OR12D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2974243164062 2 495.297507 988.580462 1.1357 0.00056252 -0.094119 -4.6617E-05 1.0416 0.0005159 495.2974672738704 55.527 0.3565 49.606 49.444 49.8 -5.9211 31 21 2 0 0 0 0.0057604 1 35378 35378 96.285 13.755 1 18869000 + 58621 18819 39162 40044 68327 68327 0.08571493900251426 SISGTVISLL 10 Unmodified _SISGTVISLL_ 0 0 0 REV__ENSG00000112462|ENST00000396806|OR12D3 REV__ENSG00000112462|ENST00000396806|OR12D3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 495.297507 988.580462 1.1357 0.00056252 -0.094119 -4.6617E-05 1.0416 0.0005159 495.2974672738704 55.527 0.3565 49.606 49.444 49.8 -5.9211 -0.10414 -0.00020341 NaN 99.799 31 21 2 NaN NaN NaN NaN 0 NaN NaN 0 18869000 + 58622 18819 39162 40044 0.08571493900251426 SISGVTAAY 9 Unmodified _SISGVTAAY_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 868.4411010742188 1 868.441074 867.433798 1.3591 0.0011803 0.20573 0.00017866 1.5649 0.001359 868.4410868429659 47.759 0.41713 42.525 42.294 42.711 -5.2339 39 24 2 0 0 0 0.0067112 2 29725 29592;29725 112.59 51.236 1 16739000 58623 5256 39163 40045 68328;68329 68329 -0.0052218326486581645 SISHSSGSEDI 11 Unmodified _SISHSSGSEDI_ 0 0 0 ENST00000582986.5_1_17:62801160-62833227:-|nuORF;ENST00000578036.5_1_17:62801160-62825332:-|nuORF;ENST00000584585.1_1_17:62817020-62825332:-|nuORF;ENST00000580919.5_1_17:62811233-62825332:-|nuORF;ENST00000397718.8_1_17:62816508-62825332:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1 ENST00000582986.5_1_17:62801160-62833227:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1 ENSG00000225190|ENST00000430334|PLEKHM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.751220703125 2 559.75165 1117.48875 0.33867 0.00018957 -1.2948 -0.00072476 -0.95612 -0.00053519 559.7508372691303 84.77 0.78881 78.595 78.262 79.05 -6.1757 177 46 5 0 0 0 0.63851 1 55594 55594 9.3831 1.473 1 137720000 58624 10582;15580 39164 40046 68330 68330 -0.0652984125488274 SISIREATPRA 11 Unmodified _SISIREATPRA_ 0 0 0 REV__ENST00000393640.8_1_16:70432915-70433221:-|nuORF REV__ENST00000393640.8_1_16:70432915-70433221:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.88134765625 3 400.894688 1199.66223 NaN NaN NaN NaN NaN NaN NaN 18.842 1 18.848 18.348 19.348 0.0060463 0 0 0 0.94165 1 9564 9564 0.45452 0 1 + 58625 26425 39165 40047 68331 68331 0.07038989312013655 SISKINETRAF 11 Unmodified _SISKINETRAF_ 0 0 0 nc|ENSG00000152229|Q9H939-2|PSTPIP2 nc|ENSG00000152229|Q9H939-2|PSTPIP2 nc|ENSG00000152229|Q9H939-2|PSTPIP2 MSMS AL20221201_MKP_PDAC_01 4 422.5682983398438 3 422.56646 1264.67755 NaN NaN NaN NaN NaN NaN NaN 53.027 1 47.223 46.723 47.723 -5.8042 0 0 0 0.63856 1 33480 33480 11.631 5.0079 1 58626 16277 39166 40048 68332 68332 0.055798561092160526 SISLHPEAQL 10 Unmodified _SISLHPEAQL_ 0 0 0 REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7960205078125 2 547.795663 1093.57677 0.34194 0.00018731 -1.0838 -0.00059373 -0.74191 -0.00040642 547.795456400759 46.8 0.40054 46.8 46.501 46.901 0 37 18 3 0 0 0 0.1942 1 25565 25565 34.402 2.3642 1 21960000 + 58627 26458 39167 40049 68333 68333 0.03372824126381602 SISLHPEAQL 10 Unmodified _SISLHPEAQL_ 0 0 0 REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 547.795663 1093.57677 0.34194 0.00018731 -1.0838 -0.00059373 -0.74191 -0.00040642 547.795456400759 46.8 0.40054 46.8 46.501 46.901 0 0.11281 -0.00065545 NaN 34.402 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 21960000 + 58628 26458 39167 40049 0.03372824126381602 SISLHPEAQL 10 Unmodified _SISLHPEAQL_ 0 0 0 REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF REV__ENST00000394864.2_1_10:75013758-75013821:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.795663 1093.57677 0.56917 0.00031179 0.023421 1.283E-05 0.59259 0.00032462 547.7956266980959 47.026 0.19334 46.689 46.582 46.775 -0.33664 0.0026389 0.00055767 NaN 34.402 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 7697700 + 58629 26458 39167 40049 0.03372824126381602 SISLQITQV 9 Unmodified _SISLQITQV_ 0 0 0 ENST00000605233.2_1_12:89919492-89933896:+|nuORF ENST00000605233.2_1_12:89919492-89933896:+|nuORF ENST00000605233.2_1_12:89919492-89933896:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7878112792969 2 494.787307 987.560061 0.653 0.0003231 0.43278 0.00021414 1.0858 0.00053723 494.7871797488121 57.274 0.27932 56.784 56.6 56.88 -0.48974 19 12 2 0 0 0 0.070838 1 31110 31110 39.957 3.8303 1 1991700 58630 15843 39168 40050 68334 68334 0.065783232404101 SISLQITQV 9 Unmodified _SISLQITQV_ 0 0 0 ENST00000605233.2_1_12:89919492-89933896:+|nuORF ENST00000605233.2_1_12:89919492-89933896:+|nuORF ENST00000605233.2_1_12:89919492-89933896:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 494.787307 987.560061 0.17189 8.5051E-05 -0.44904 -0.00022218 -0.27715 -0.00013713 494.7869795899127 56.732 0.2686 56.732 56.586 56.855 0 -0.026109 -0.00039105 NaN 39.957 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1791200 58631 15843 39168 40050 0.065783232404101 SISNLVFTY 9 Unmodified _SISNLVFTY_ 0 0 0 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2743530273438 2 522.274032 1042.53351 0.36747 0.00019192 1.1599 0.00060577 1.5273 0.00079768 522.2747420008162 79.117 0.63559 78.631 78.189 78.824 -0.48596 48 26 3 0 0 0 0.32871 2 43306 43306;43413 15.847 1.0089 1 2709500 58632 3814 39169 40051 68335;68336 68335 0.013946343490943036 SISPRWPSL 9 Unmodified _SISPRWPSL_ 0 0 0 ENST00000359461.10_1_11:66052432-66055122:-|nuORF ENST00000359461.10_1_11:66052432-66055122:-|nuORF ENST00000359461.10_1_11:66052432-66055122:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.7860107421875 2 521.787641 1041.56073 -0.098334 -5.131E-05 -1.2014 -0.00062689 -1.2998 -0.0006782 521.787217810778 33.045 0.20746 33.074 32.979 33.186 0.029743 15 8 2 0 0 0 0.044011 1 17388 17388 47.749 0 1 770820 58633 12146 39170 40052 68337 68337 0.04161162680134112 SISRTLQHR 9 Unmodified _SISRTLQHR_ 0 0 0 REV__nc|ENSG00000076685|P49902-2|NT5C2 REV__nc|ENSG00000076685|P49902-2|NT5C2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2103271484375 3 366.54399 1096.61014 0.33502 0.0001228 0.053311 1.9541E-05 0.38833 0.00014234 366.5439498654302 40.235 0.33393 40.24 40.048 40.382 0.0050583 23 15 2 0 0 0 0.20207 1 21443 21443 11.495 2.5185 1 1560100 + 58634 17594 39171 40053 68338 68338 0.06569870688940682 SISVFERLIN 10 Unmodified _SISVFERLIN_ 0 0 0 REV__ENSG00000110395|ENST00000264033|CBL REV__ENSG00000110395|ENST00000264033|CBL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5460205078125 3 393.224034 1176.65027 0.047219 1.8568E-05 1.4019 0.00055125 1.4491 0.00056981 393.22433910660334 38.123 0.33228 37.852 37.66 37.992 -0.27133 28 15 2 0 0 0 0.23871 1 19987 19987 5.0475 1.9753 1 5635600 + 58635 18707 39172 40054 68339 68339 0.06901372568881925 SITAIILLK 9 Unmodified _SITAIILLK_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|330|3|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|330|3|anti-sense MSMS AL20221201_MKP_PDAC_01 4 486.3280334472656 2 486.328611 970.642668 NaN NaN NaN NaN NaN NaN NaN 102.67 1 96.491 95.991 96.991 -6.1757 0 0 0 0.83049 1 68887 68887 3.9444 0 1 + 58636 16789 39173 40055 68340 68340 0.15617265039225003 SITDPTRSML 10 Unmodified _SITDPTRSML_ 0 0 0 REV__ENSG00000176542|ENST00000316407|USF3 REV__ENSG00000176542|ENST00000316407|USF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7863159179688 2 560.786981 1119.55941 1.3213 0.00074098 -3.1738 -0.0017798 -1.8524 -0.0010388 560.7859347174152 81.31 0.41588 75.134 74.98 75.395 -6.1757 29 23 2 0 0 0 0.10424 1 53399 53399 45.7 1.8413 1 15328000 + 58637 22936 39174 40056 68341 68341 0.004411605290897569 SITKCDTDIQ 10 Unmodified _SITKCDTDIQ_ 0 0 0 ENSG00000169717|ENST00000378404|ACTRT2 ENSG00000169717|ENST00000378404|ACTRT2 ENSG00000169717|ENST00000378404|ACTRT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5390014648438 3 375.181506 1122.52269 -0.068545 -2.5717E-05 0.64401 0.00024162 0.57546 0.0002159 375.18169543576477 32.284 0.44473 32.154 31.842 32.287 -0.12915 23 17 2 0 0 0 0.23412 1 16813 16813 3.0723 0.63748 1 1176200 58638 7905 39175 40057 68342 68342 -0.033671360874905076 SITLKARQ 8 Unmodified _SITLKARQ_ 0 0 0 REV__ENST00000474726.5_1_20:1352758-1358098:-|nuORF REV__ENST00000474726.5_1_20:1352758-1358098:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 458.7829284667969 2 458.782359 915.550165 NaN NaN NaN NaN NaN NaN NaN 97.55 1 91.374 90.874 91.874 -6.1757 0 0 0 0.94061 1 64647 64647 12.532 0 1 + 58639 16805 39176 40058 68343 68343 0.08901180025702615 SITVMVILF 9 Unmodified _SITVMVILF_ 0 0 0 ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 ENSG00000178795|ENST00000315938|GDPD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3007202148438 2 511.801371 1021.58819 0.044937 2.2999E-05 0.0099301 5.0822E-06 0.054867 2.8081E-05 511.80138954490917 85.884 0.14365 85.946 85.827 85.97 0.061638 9 5 2 0 0 0 0.11012 1 47531 47531 36.044 0 1 23502000 58640 8774 39177 40059 68344 68344 0.07825929896171147 SITVNDVVF 9 Unmodified _SITVNDVVF_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2666931152344 2 497.266207 992.517862 0.25614 0.00012737 0.1413 7.0265E-05 0.39744 0.00019763 497.2660339184907 65.774 0.69723 65.774 65.394 66.091 0 66 32 3 0 0 0 0.16226 1 36661 36661 26.884 0 1 7904300 58641 678 39178 40060 68345 68345 0.02130347832053303 SIVEDKRGISI 11 Unmodified _SIVEDKRGISI_ 0 0 0 REV__nc|ENSG00000152359|Q8NA72-2|POC5 REV__nc|ENSG00000152359|Q8NA72-2|POC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3031616210938 2 608.848427 1215.6823 2.208 0.0013444 3.4028 0.0020718 5.6109 0.0034162 608.8504304880885 95.088 0.24205 95.093 94.942 95.184 0.004158 11 8 2 0 0 0 0.28953 1 52867 52867 13.042 2.2185 1 577900 + 58642 21111 39179 40061 68346 68346 0.08308740252005009 SIVETILIY 9 Unmodified _SIVETILIY_ 0 0 0 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant;ENSG00000197442|ENST00000359015|MAP3K5 MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MAP3K5|p.T1225Efs*10|1|0.53|ENSG00000197442|chr6:136567720-136567721|-/CTCA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8074951171875 2 525.807708 1049.60086 0.33523 0.00017627 0.43123 0.00022675 0.76646 0.00040301 525.8079307741699 91.371 0.29718 90.877 90.734 91.031 -0.49457 31 13 3 0 0 0 0.58466 1 50010 50010 2.3027 0 1 1109300 58643 9954 39180 40062 68347 68347 0.07804664560057972 SIVNDLTIA 9 Unmodified _SIVNDLTIA_ 0 0 0 nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF nc|ENSG00000163359|P12111-4|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.5300903320312 1 945.525138 944.517862 -0.17266 -0.00016325 0.60501 0.00057205 0.43235 0.0004088 945.5257662010503 68.9 0.28326 68.9 68.74 69.023 0 25 11 3 0 0 0 0.12424 1 38444 38444 30.637 5.2372 1 2181600 58644 6984 39181 40063 68348 68348 0.043383478320379254 SIVPSLKPS 9 Unmodified _SIVPSLKPS_ 0 0 0 REV__nc|ENSG00000113448|Q08499-7|PDE4D REV__nc|ENSG00000113448|Q08499-7|PDE4D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 927.786376953125 1 927.550959 926.543683 1.3194 0.0012238 -0.10514 -9.7521E-05 1.2143 0.0011263 927.5529995824128 100.56 0.084412 100.52 100.45 100.53 -0.04216 4 2 2 0 0 0 0.19613 1 55850 55850 1.8442 0 1 3426700 + 58645 29580 39182 40064 68349 68349 0.07747242074322003 SIVRWSSR 8 Unmodified _SIVRWSSR_ 0 0 0 REV__nc|ENSG00000166913|P31946-2|YWHAB REV__nc|ENSG00000166913|P31946-2|YWHAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7772827148438 2 495.777608 989.540663 -0.002715 -1.346E-06 -1.1741 -0.00058209 -1.1768 -0.00058343 495.7768914156228 31.055 0.24884 31.085 30.925 31.174 0.030106 24 10 3 0 0 0 0.63706 1 16230 16230 22.736 2.2827 1 4681300 + 58646 19603 39183 40065 68350 68350 0.04547411740179541 SIVTPQRTI 9 Unmodified _SIVTPQRTI_ 0 0 0 REV__ENSG00000043039|ENST00000281437|BARX2 REV__ENSG00000043039|ENST00000281437|BARX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.2517700195312 2 507.800749 1013.58694 0.46989 0.00023861 -0.97496 -0.00049508 -0.50507 -0.00025647 507.80013584122844 53.232 0.24684 47.427 47.251 47.498 -5.8042 21 14 2 0 0 0 0.16895 1 33652 33652 18.146 4.2403 1 18366000 + 58647 17210 39184 40066 68351 68351 0.0806943185162936 SIWDELFF 8 Unmodified _SIWDELFF_ 0 0 0 nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000164398|Q9UKU0-3|ACSL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2562255859375 2 528.755475 1055.4964 0.401 0.00021203 -0.52551 -0.00027786 -0.1245 -6.5833E-05 528.7553267876151 92.358 0.28403 92.358 92.247 92.531 0 38 22 2 0 0 0 0.80676 1 51041 51041 2.5775 0.27475 1 752690 58648 16343 39185 40067 68352 68352 -0.029130371966630264 SIWTDLLL 8 Unmodified _SIWTDLLL_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7742004394531 2 480.773668 959.532783 0.5992 0.00028808 0.46203 0.00022213 1.0612 0.00051021 480.77393290343866 75.898 0.25203 75.421 75.276 75.528 -0.47713 15 10 2 0 0 0 0.6895 1 41550 41550 18.135 7.3111 1 640760 58649 9123 39186 40068 68353 68353 0.05139839700041193 SIYDPPVPDF 10 Unmodified _SIYDPPVPDF_ 0 0 0 nc|ENSG00000178802|P34949-2|MPI;ENSG00000178802|ENST00000352410|MPI;ENST00000566556.1_1_15:75189332-75189575:+|nuORF nc|ENSG00000178802|P34949-2|MPI nc|ENSG00000178802|P34949-2|MPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2769165039062 2 575.276772 1148.53899 -0.13643 -7.8483E-05 -0.84423 -0.00048566 -0.98066 -0.00056415 575.2760321267938 56.032 0.25785 56.032 55.904 56.162 0 24 12 3 0 0 0 0.62068 1 31161 31161 10.074 2.1638 1 9912500 58650 8776 39187 40069 68354 68354 -0.02933686859091722 SIYIVTWVY 9 Unmodified _SIYIVTWVY_ 0 0 0 nc|ENSG00000078124|Q9NUN7-2|ACER3;ENSG00000078124|ENST00000532485|ACER3;ENST00000530334.5_1_11:76579304-76726162:+|nuORF nc|ENSG00000078124|Q9NUN7-2|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.3082885742188 2 572.307875 1142.6012 0.45556 0.00026072 -2.044 -0.0011698 -1.5884 -0.00090907 572.3067960510828 59.093 0.33828 58.602 58.391 58.729 -0.49079 31 15 3 0 0 0 0.2001 1 32145 32145 23.148 0.41214 1 2640500 58651 1237 39188 40070 68355 68355 0.035600842798885424 SIYIVTWVY 9 Unmodified _SIYIVTWVY_ 0 0 0 nc|ENSG00000078124|Q9NUN7-2|ACER3;ENSG00000078124|ENST00000532485|ACER3;ENST00000530334.5_1_11:76579304-76726162:+|nuORF nc|ENSG00000078124|Q9NUN7-2|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 572.307875 1142.6012 0.39374 0.00022534 -2.8597 -0.0016366 -2.466 -0.0014113 572.3060089547741 58.574 0.28219 58.574 58.441 58.723 0 -0.013978 -0.0005526 NaN 23.148 35 11 4 NaN NaN NaN NaN 0 NaN NaN 0 4946200 58652 1237 39188 40070 0.035600842798885424 SIYLVFDFCEH 11 Unmodified _SIYLVFDFCEH_ 0 0 0 ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000136807|ENST00000373264|CDK9 ENSG00000136807|ENST00000373264|CDK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.5481262207031 3 458.212918 1371.61692 0.098754 4.5251E-05 1.5245 0.00069853 1.6232 0.00074378 458.2139591415216 76.268 0.22324 75.789 75.661 75.885 -0.47945 25 8 4 0 0 0 0.71036 1 41752 41752 1.3296 0 1 1016200 58653 4856 39189 40071 68356 68356 -0.0540199726535775 SIYTPLYTL 9 Unmodified _SIYTPLYTL_ 0 0 0 REV__nc|ENSG00000112337|O00624-2|SLC17A2 REV__nc|ENSG00000112337|O00624-2|SLC17A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7913208007812 2 535.792058 1069.56956 0.18732 0.00010036 -2.7095 -0.0014517 -2.5222 -0.0013513 535.7906681191297 99.811 0.16254 93.635 93.541 93.703 -6.1757 19 11 2 0 0 0 0.03568 1 66561 66561 52.268 3.9225 1 63134000 + 58654 18813 39190 40072 68357 68357 0.03756091525951888 SKARKRGE 8 Unmodified _SKARKRGE_ 0 0 0 REV__ENST00000433477.3_1_4:156846568-156846796:-|nuORF REV__ENST00000433477.3_1_4:156846568-156846796:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.2781372070312 2 466.275232 930.535912 NaN NaN NaN NaN NaN NaN NaN 106.22 1 100.04 99.54 100.54 -6.1757 0 0 0 0.97444 1 71110 71110 2.3027 0 1 + 58655 26999 39191 40073 68358 68358 0.06786527597421355 SKDAQGPM 8 Unmodified _SKDAQGPM_ 0 0 0 ENSG00000163395|ENST00000335211|IGFN1;nc|ENSG00000163395|Q86VF2-3|IGFN1;nc|ENSG00000163395|Q86VF2-2|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1;ENST00000473483.1_1_1:201182298-201185067:+|nuORF;nc|ENSG00000163395|Q86VF2-4|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.1948547363281 2 417.194728 832.374903 NaN NaN NaN NaN NaN NaN NaN 17.823 1 17.823 17.323 18.323 0 0 0 0 0.97444 1 8815 8815 2.3027 0 1 58656 6988 39192 40074 68359 68359 -0.04798982830834575 SKDASEQDQEQ 11 Unmodified _SKDASEQDQEQ_ 0 0 0 REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF REV__ENST00000490265.5_1_X:13771424-13787224:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.7688598632812 2 632.768028 1263.5215 0.13234 8.3743E-05 0.28931 0.00018306 0.42165 0.00026681 632.7681348150101 89.028 0.45673 89.028 88.827 89.284 0 59 25 3 0 0 0 0.71341 1 49291 49291 2.9952 0 1 1053100 + 58657 17219 39193 40075 68360 68360 -0.0997167892271591 SKDEDEDIQSI 11 Unmodified _SKDEDEDIQSI_ 0 0 0 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 ENSG00000159166|ENST00000391967|LAD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.3223266601562 2 639.788429 1277.56231 0.023646 1.5129E-05 -0.66583 -0.00042599 -0.64219 -0.00041086 639.7882235488065 39.713 0.36214 39.713 39.53 39.892 0 43 17 3 0 0 0 0.29031 1 21347 21347 13.615 5.4593 1 5770500 58658 6631 39194 40076 68361 68361 -0.06537337603072046 SKDLTHFMTC 10 Unmodified _SKDLTHFMTC_ 0 0 0 REV__ENSG00000172568|ENST00000312349|FNDC9 REV__ENSG00000172568|ENST00000312349|FNDC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8477478027344 3 394.847581 1181.52091 -0.01368 -5.4013E-06 -0.38785 -0.00015314 -0.40153 -0.00015854 394.8474270575639 37.384 0.16208 37.384 37.296 37.458 0 18 8 3 0 0 0 0.56348 1 19899 19899 15.739 9.9552 1 3027000 + 58659 22660 39195 40077 68362 68362 -0.06258468377086501 SKDQPRVLL 9 Unmodified _SKDQPRVLL_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8625793457031 3 352.545108 1054.61349 1.1128 0.0003923 -0.41421 -0.00014603 0.69854 0.00024627 352.5450637757904 27.795 0.36054 24.758 24.594 24.955 -3.0365 25 18 2 0 0 0 0.19994 1 15504 15504 12.241 5.1389 1 10683000 58660 5671 39196 40078 68363 68363 0.08837120742964544 SKDRRRRR 8 Unmodified _SKDRRRRR_ 0 0 0 ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2262268066406 3 377.230628 1128.67005 NaN NaN NaN NaN NaN NaN NaN 103.89 1 103.84 103.34 104.34 -0.048737 0 0 0 0.97444 1 57688 57688 1.3295 0.13619 1 58661 5048 39197 40079 68364 68364 0.11086606142839628 SKDSHLNF 8 Unmodified _SKDSHLNF_ 0 0 0 REV__nc|ENSG00000065054|Q15599-2|NHERF2 REV__nc|ENSG00000065054|Q15599-2|NHERF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2333679199219 2 474.232699 946.450845 NaN NaN NaN NaN NaN NaN NaN 88.577 1 88.577 88.077 89.077 0 0 0 0 0.97444 1 49025 49025 2.3027 1.5091 1 + 58662 17369 39198 40080 68365 68365 -0.024522626590396612 SKEELRKLLQK 11 Unmodified _SKEELRKLLQK_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.9496154785156 3 457.948793 1370.82455 0.48758 0.00022329 0.54843 0.00025115 1.036 0.00047444 457.9490914643648 49.02 0.24694 48.976 48.887 49.134 -0.04369 28 11 3 0 0 0 0.73237 1 26471 26471 1.2148 0 1 3298400 58663 2795 39199 40081 68366 68366 0.15396952994183266 SKEGGVTFTWV 11 Unmodified _SKEGGVTFTWV_ 0 0 0 nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3 nc|ENSG00000168610|P40763-3|STAT3 nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.808837890625 2 605.808771 1209.60299 -0.13819 -8.3717E-05 0.49922 0.00030243 0.36103 0.00021871 605.8088314262767 84.126 0.2469 84.126 84.001 84.248 0 19 12 2 0 0 0 0.6747 1 46629 46629 6.6304 2.4409 1 314460 58664 7784 39200 40082 68367 68367 0.006570932978547717 SKERFHRK 8 Unmodified _SKERFHRK_ 0 0 0 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.8656616210938 3 363.20883 1086.60466 1.8773 0.00068186 3.9302 0.0014275 5.8075 0.0021093 363.2111585380475 40.852 0.31724 36.285 36.125 36.442 -4.5667 43 19 3 0 0 0 8.7369 1 24530 24530 5.7319 2.1354 1 8981700 + 58665 23856 39201 40083 68368 68368 0.06482191897134726 SKERFHRK 8 Unmodified _SKERFHRK_ 0 0 0 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.20883 1086.60466 0.33249 0.00012076 1.9397 0.00070453 2.2722 0.00082529 363.20977204601104 36.193 0.15525 36.193 36.113 36.269 0 -0.045847 -0.00089627 NaN 5.7319 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2082100 + 58666 23856 39201 40083 0.06482191897134726 SKERLKGLI 9 Unmodified _SKERLKGLI_ 0 0 0 REV__ENST00000475971.5_1_7:893033-912965:+|nuORF REV__ENST00000475971.5_1_7:893033-912965:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3316040039062 2 522.332216 1042.64988 -0.6763 -0.00035325 0.55699 0.00029093 -0.11931 -6.2319E-05 522.3321492666815 102.26 0.37726 102.21 102.02 102.4 -0.045853 19 12 2 0 0 0 0.61256 1 56808 56808 0.6015 0 1 2124900 + 58667 21955 39202 40084 68369 68369 0.13025997639670095 SKERLKGLI 9 Unmodified _SKERLKGLI_ 0 0 0 REV__ENST00000475971.5_1_7:893033-912965:+|nuORF REV__ENST00000475971.5_1_7:893033-912965:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 522.332216 1042.64988 -0.6763 -0.00035325 0.55699 0.00029093 -0.11931 -6.2319E-05 522.3321492666815 102.26 0.37726 102.21 102.02 102.4 -0.045853 0.039825 0.00037459 NaN 0.6015 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2124900 + 58668 21955 39202 40084 0.13025997639670095 SKERRRSGR 9 Unmodified _SKERRRSGR_ 0 0 0 REV__ENST00000409786.1_1_2:171570143-171571073:-|nuORF REV__ENST00000409786.1_1_2:171570143-171571073:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8879089355469 3 377.886638 1130.63809 NaN NaN NaN NaN NaN NaN NaN 17.86 1 17.874 17.374 18.374 0.013865 0 0 0 0.84021 1 8913 8913 2.7352 0.23671 1 + 58669 26699 39203 40085 68370 68370 0.07799193669052329 SKESHISISKL 11 Unmodified _SKESHISISKL_ 0 0 0 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 REV__nc|ENSG00000118197|Q5T1V6-2|DDX59 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.7801513671875 2 614.848427 1227.6823 NaN NaN NaN NaN NaN NaN NaN 60.605 1 60.116 59.616 60.616 -0.48932 0 0 0 0.75507 1 33004 33004 14.218 1.3456 1 + 58670 19138 39204 40086 68371 68371 0.07756740251988958 SKEYHRYR 8 Unmodified _SKEYHRYR_ 0 0 0 ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG ENSG00000138398|ENST00000260970|PPIG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.195556640625 3 380.19659 1137.56794 NaN NaN NaN NaN NaN NaN NaN 23.615 1 23.636 23.136 24.136 0.021185 0 0 0 0.97444 1 12167 12167 3.9444 2.2918 1 58671 5048 39205 40087 68372 68372 0.004658952805584704 SKFILKPRPK 10 Unmodified _SKFILKPRPK_ 0 0 0 nc|ENSG00000008277|Q9P0K1-2|ADAM22;ENSG00000008277|ENST00000413139|ADAM22;nc|ENSG00000008277|Q9P0K1-4|ADAM22;nc|ENSG00000008277|Q9P0K1-3|ADAM22;nc|ENSG00000008277|Q9P0K1-5|ADAM22;nc|ENSG00000008277|Q9P0K1|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 MSMS AL20221201_MKP_PDAC_01 4 405.2654418945312 3 405.264164 1212.77066 NaN NaN NaN NaN NaN NaN NaN 107.4 1 101.22 100.72 101.72 -6.1757 0 0 0 1.005 1 71835 71835 0.12286 0.12286 1 58672 381 39206 40088 68373 68373 0.17278825353128013 SKFLDPGQI 9 Unmodified _SKFLDPGQI_ 0 0 0 ENST00000275569.8_1_7:76239477-76254863:-|nuORF ENST00000275569.8_1_7:76239477-76254863:-|nuORF ENST00000275569.8_1_7:76239477-76254863:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2785034179688 2 502.7742 1003.53385 0.28711 0.00014435 0.32211 0.00016195 0.60922 0.0003063 502.77432603847626 84.672 0.6653 78.497 78.155 78.82 -6.1757 47 34 2 0 0 0 0.36964 1 55943 55943 13.906 0.86358 1 73386000 58673 11390 39207 40089 68374 68374 0.032220540689422705 SKFQSRYHGYF 11 Unmodified _SKFQSRYHGYF_ 0 0 0 REV__ENSG00000236980|ENST00000545770|C3orf84 REV__ENSG00000236980|ENST00000545770|C3orf84 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.8990783691406 3 473.898321 1418.67313 0.60341 0.00028595 0.23659 0.00011212 0.84 0.00039807 473.8982646807401 49.418 0.28101 49.372 49.253 49.534 -0.045826 25 13 3 0 0 0 0.69509 1 26692 26692 4.7159 1.6437 1 2572700 + 58674 24427 39208 40090 68375 68375 -0.019456083136901725 SKGETGKRSKE 11 Unmodified _SKGETGKRSKE_ 0 0 0 nc|ENSG00000050405|Q9UHB6-3|LIMA1;nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 nc|ENSG00000050405|Q9UHB6-3|LIMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.8240356445312 2 603.825483 1205.63641 -0.11453 -6.9153E-05 -1.5751 -0.00095111 -1.6897 -0.0010203 604.3263472506686 91.022 0.29219 91.022 90.833 91.125 0 25 13 3 0 0 0 0.7187 1 50314 50314 2.4985 0 1 740860 58675 723 39209 40091 68376 68376 0.041820950697683656 SKGFGHIWLD 10 Unmodified _SKGFGHIWLD_ 0 0 0 nc|ENSG00000177575|Q86VB7-4|CD163;ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF nc|ENSG00000177575|Q86VB7-4|CD163 nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5361022949219 3 387.201341 1158.58219 -0.2851 -0.00011039 1.0609 0.00041079 0.77583 0.0003004 387.53578045002723 31.93 0.1714 31.96 31.887 32.059 0.030104 10 7 2 0 0 0 0.71516 1 16779 16779 1.2148 0.14337 1 1230700 58676 16406 39210 40092 68377 68377 0.009245477088597909 SKGMRIKKL 9 Unmodified _SKGMRIKKL_ 0 0 0 REV__ENST00000454074.5_1_7:112428555-112430236:-|nuORF REV__ENST00000454074.5_1_7:112428555-112430236:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.2275695800781 3 354.226833 1059.65867 2.0135 0.00071322 0.35113 0.00012438 2.3646 0.0008376 354.2271324458117 35.955 0.56153 31.762 31.457 32.018 -4.1928 46 34 2 0 0 0 0.58499 1 20988 20988 2.2828 1.2113 1 18933000 + 58677 27236 39211 40093 68378 68378 0.13122648004491566 SKHRFERY 8 Unmodified _SKHRFERY_ 0 0 0 REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1 REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8644409179688 3 374.864952 1121.57303 -0.46425 -0.00017403 -1.0685 -0.00040056 -1.5328 -0.00057459 374.8644865969383 19.995 0.28393 19.995 19.874 20.158 0 100 33 4 0 0 0 0.80232 1 9993 9993 3.5965 0 1 10230000 + 58678 17530 39212 40094 68379 68379 0.017101991431900387 SKHRFERY 8 Unmodified _SKHRFERY_ 0 0 0 REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1 REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8654174804688 3 374.864952 1121.57303 0.080788 3.0285E-05 -0.36168 -0.00013558 -0.28089 -0.00010529 374.864947381163 19.922 0.14486 19.93 19.84 19.985 0.0078487 13 7 2 0 0 0 0.80232 1 10144 10144 3.5965 0 1 396750 + 58679 17530 39212 40094 68380 68380 0.017101991431900387 SKIKRLYKLL 10 Unmodified _SKIKRLYKLL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2816162109375 3 421.283336 1260.82818 NaN NaN NaN NaN NaN NaN NaN 84.67 1 84.67 84.17 85.17 0 0 0 0 1.0047 1 46935 46935 0.15932 0.036457 1 58680 6155;16276;14741 39213 40095 68381 68381 0.2081966755870326 SKIRQKYCLS 10 Unmodified _SKIRQKYCLS_ 0 0 0 REV__nc|ENSG00000204655|Q16653-13|MOG REV__nc|ENSG00000204655|Q16653-13|MOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3485717773438 2 613.339715 1224.66488 3.1586 0.0019373 0.89046 0.00054616 4.049 0.0024834 613.3420590446678 97.128 1.833 97.121 96.772 98.605 -0.007019 278 68 6 0 0 0 0.71276 1 54355 54355 1.4819 0 1 144880000 + 58681 29910 39214 40096 68382 68382 0.06153121445368015 SKIYEMQKTI 10 Unmodified _SKIYEMQKTI_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2249450683594 3 414.225046 1239.65331 -0.040816 -1.6907E-05 -1.6164 -0.00066954 -1.6572 -0.00068644 414.2245432058782 19.848 0.17397 19.856 19.756 19.93 0.0078487 19 8 3 0 0 0 0.69064 1 10097 10097 1.9064 0 1 1226700 58682 1879 39215 40097 68383 68383 0.0430687963132641 SKKEPGVV 8 Unmodified _SKKEPGVV_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2503662109375 2 422.25036 842.486168 1.8493 0.00078085 0.31382 0.00013251 2.1631 0.00091336 422.25037718674884 105.23 0.14863 99.054 98.977 99.125 -6.1757 83 35 3 0 0 0 0.80975 1 70455 70455 0.79363 0 1 243560000 58683 8543 39216 40098 68384 68384 0.05862399868772172 SKKKKKKKG 9 Unmodified _SKKKKKKKG_ 0 0 0 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1060.739624023438 1 1059.73607 1058.7288 0.12568 0.00013319 -2.7216 -0.0028842 -2.596 -0.002751 1059.7375832279645 55.075 0.081093 54.597 54.548 54.629 -0.47798 5 3 2 0 0 0 0.62242 1 29840 29840 0 0 1 926050 + 58684 22430 39217 40099 68385 68385 0.20178269664597792 SKKKKKKKG 9 Unmodified _SKKKKKKKG_ 0 0 0 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1059.73607 1058.7288 0.12568 0.00013319 -2.7216 -0.0028842 -2.596 -0.002751 1059.7375832279645 55.075 0.081093 54.597 54.548 54.629 -0.47798 0 0 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 926050 + 58685 22430 39217 40099 0.20178269664597792 SKKKRRRGRK 10 Unmodified _SKKKRRRGRK_ 0 0 0 ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000162825|P0DPF2|NBPF20;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12 ENSG00000268043|ENST00000698835|NBPF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.4318237304688 2 650.431453 1298.84835 NaN NaN NaN NaN NaN NaN NaN 84.817 1 84.318 83.818 84.818 -0.49961 0 0 0 1.0061 1 46412 46412 0 0 1 58686 6918;10870 39218 40100 68386 68386 0.21088276061868783 SKKNKKSKT 9 Unmodified _SKKNKKSKT_ 0 0 0 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 REV__nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.8272094726562 2 524.827298 1047.64004 0.41187 0.00021616 -0.043199 -2.2672E-05 0.36867 0.00019349 524.8271575205453 90.134 0.54904 90.176 89.886 90.435 0.042175 61 19 4 0 0 0 0.61801 1 50155 50155 0 0 1 171650000 + 58687 22265 39219 40101 68387 68387 0.11812809634261612 SKKRERKKKRK 11 Unmodified _SKKRERKKKRK_ 0 0 0 ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 736.4859008789062 2 736.486425 1470.9583 NaN NaN NaN NaN NaN NaN NaN 104.23 1 104.18 103.68 104.68 -0.048737 0 0 0 0.9435 1 57872 57872 0 0 1 58688 8807 39220 40102 68388 68388 0.24165656610352926 SKKRHAAF 8 Unmodified _SKKRHAAF_ 0 0 0 REV__ENST00000532758.5_1_8:145137633-145138586:+|nuORF REV__ENST00000532758.5_1_8:145137633-145138586:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7763671875 2 472.774868 943.535184 NaN NaN NaN NaN NaN NaN NaN 0.04694 1 -0.02698 -0.52698 0.47302 -0.07392 0 0 0 0.97444 1 24 24 0.6015 0 1 + 58689 23960 39221 40103 68389 68389 0.06115732948353525 SKKRKKKKKK 10 Unmodified _SKKRKKKKKK_ 0 0 0 REV__ENST00000392686.6_1_3:178977460-178977592:-|nuORF REV__ENST00000392686.6_1_3:178977460-178977592:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.9580688476562 2 643.958981 1285.90341 NaN NaN NaN NaN NaN NaN NaN 14.578 1 14.585 14.085 15.085 0.0073986 0 0 0 1.0061 1 7232 7232 0 0 1 + 58690 26396 39222 40104 68390 68390 0.27189269809741745 SKKRRAAS 8 Unmodified _SKKRRAAS_ 0 0 0 ENST00000465761.1_1_20:43561720-43565607:+|nuORF ENST00000465761.1_1_20:43561720-43565607:+|nuORF ENST00000465761.1_1_20:43561720-43565607:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2781982421875 2 452.277775 902.540997 0.75741 0.00034256 -0.067819 -3.0673E-05 0.6896 0.00031189 452.2777007413422 80.8 0.34282 80.307 80.08 80.422 -0.49247 25 14 2 0 0 0 0.81107 1 44205 44205 0 0 1 1826200 58691 13739 39223 40105 68391 68391 0.08582831460023499 SKKRSKKKRK 10 Unmodified _SKKRSKKKRK_ 0 0 0 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 REV__nc|ENSG00000150776|Q6ZUT1-3|NKAPD1 MSMS AL20221201_MKP_PDAC_01 4 425.2901916503906 3 425.289484 1272.84662 NaN NaN NaN NaN NaN NaN NaN 106.11 1 99.931 99.431 100.43 -6.1757 0 0 0 1.0061 1 71045 71045 0 0 1 + 58692 21039 39224 40106 68392 68392 0.22111222253238338 SKLTSCKEEF 10 Carbamidomethyl (C) _SKLTSC(Carbamidomethyl (C))KEEF_ SKLTSC(1)KEEF SKLTSC(50)KEEF 0 1 0 REV__ENST00000463678.5_1_1:110028686-110035219:+|nuORF REV__ENST00000463678.5_1_1:110028686-110035219:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.2994995117188 2 614.797546 1227.58054 0.30451 0.00018721 0.47155 0.00028991 0.77606 0.00047712 615.3001856834338 35.832 0.416 35.832 35.594 36.01 0 60 20 4 0 0 0 0.087043 1 18991 18991 49.554 18.918 1 12839000 + 58693 21674 39225 40107 68393 68393 1045 -0.024148741620820147 SKNLEKAIQI 10 Unmodified _SKNLEKAIQI_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3400268554688 2 572.340238 1142.66592 1.8511 0.0010594 0.17592 0.00010069 2.027 0.0011601 572.3404171072741 93.775 0.52377 93.798 93.62 94.144 0.022987 33 20 2 0 0 0 0.63089 1 52118 52118 9.544 0.9507 1 1394400 58694 2194 39226 40108 68394 68394 0.10029659085921594 SKPDPEVGPLL 11 Unmodified _SKPDPEVGPLL_ 0 0 0 ENSG00000185670|ENST00000394807|ZBTB3;nc|ENSG00000185670|Q9H5J0|ZBTB3 ENSG00000185670|ENST00000394807|ZBTB3 ENSG00000185670|ENST00000394807|ZBTB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5340576171875 3 384.548406 1150.62339 0.25863 9.9455E-05 -3.9908 -0.0015347 -3.7322 -0.0014352 384.5471662832885 60.949 0.12155 60.906 60.845 60.967 -0.04351 8 5 2 0 0 0 0.30356 1 33236 33236 5.0475 2.9615 1 1211000 58695 9400 39227 40109 68395 68395 0.05410263957674033 SKPELKKVF 9 Unmodified _SKPELKKVF_ 0 0 0 REV__nc|ENSG00000180953|Q9HBF5|ST20 REV__nc|ENSG00000180953|Q9HBF5|ST20 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.8016357421875 2 538.329142 1074.64373 1.0412 0.00056049 -0.80304 -0.0004323 0.23812 0.00012819 538.3285225557736 89.477 1.0354 83.301 82.882 83.918 -6.1757 121 57 3 0 0 0 0.16418 1 58812 58812 13.906 0 1 48689000 + 58696 29824 39228 40110 68396 68396 0.10939479408125408 SKPEYVKPDF 10 Unmodified _SKPEYVKPDF_ 0 0 0 ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF;nc|ENSG00000101639|Q8TEP8-2|CEP192 ENSG00000101639|ENST00000506447|CEP192 ENSG00000101639|ENST00000506447|CEP192 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2409057617188 2 605.311146 1208.60774 -0.12046 -7.2918E-05 0.52817 0.00031971 0.40771 0.00024679 605.3116068038815 69.525 0.40588 69.525 69.286 69.692 0 25 18 2 0 0 0 0.23952 1 38615 38615 2.9952 0.69251 1 455070 58697 1983 39229 40111 68397 68397 0.011779774406022625 SKPIEGGYN 9 Unmodified _SKPIEGGYN_ 0 0 0 REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3 REV__nc|ENSG00000100012|Q9UDX4-3|SEC14L3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2615051269531 2 482.740357 963.46616 0.1854 8.9502E-05 0.45085 0.00021764 0.63625 0.00030714 482.74080473720267 31.554 0.19888 31.554 31.441 31.64 0 17 9 2 0 0 0 0.18118 1 16398 16398 19.257 5.3509 1 2026700 + 58698 18001 39230 40112 68398 68398 -0.017033958618526412 SKPKPGAA 8 Unmodified _SKPKPGAA_ 0 0 0 nc|ENSG00000183773|Q96NN9-2|AIFM3 nc|ENSG00000183773|Q96NN9-2|AIFM3 nc|ENSG00000183773|Q96NN9-2|AIFM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2257690429688 2 378.224146 754.433738 2.0598 0.00077907 0.47621 0.00018011 2.536 0.00095918 378.22421933579255 108.15 2.906 101.98 100.29 103.2 -6.1757 775 534 2 0 0 0 0.80975 1 71469 71469 0.79363 0 1 11528000 58699 16453 39231 40113 68399 68399 0.046698615258037535 SKPSGLSLLPD 11 Unmodified _SKPSGLSLLPD_ 0 0 0 ENSG00000198783|ENST00000361952|ZNF830 ENSG00000198783|ENST00000361952|ZNF830 ENSG00000198783|ENST00000361952|ZNF830 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.3115844726562 2 557.311146 1112.60774 NaN NaN NaN NaN NaN NaN NaN 47.856 1 47.856 47.356 48.356 0 0 0 0 0.72333 1 26218 26218 15.739 1.8326 1 58700 10149 39232 40114 68400 68400 0.05593977440639719 SKQHFPHNF 9 Unmodified _SKQHFPHNF_ 0 0 0 REV__ENSG00000153339|ENST00000283351|TRAPPC8 REV__ENSG00000153339|ENST00000283351|TRAPPC8 MSMS AL20221201_MKP_PDAC_01 4 381.1914672851562 3 381.189435 1140.54648 NaN NaN NaN NaN NaN NaN NaN 94.472 1 88.296 87.796 88.796 -6.1757 0 0 0 0.82396 1 62576 62576 2.7352 0 1 + 58701 21169 39233 40115 68401 68401 -0.018174897481685548 SKQIIHRLVVA 11 Unmodified _SKQIIHRLVVA_ 0 0 0 REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF REV__ENST00000484843.1_1_4:106638770-106744253:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.3959350585938 2 632.398422 1262.78229 NaN NaN NaN NaN NaN NaN NaN 85.908 1 85.97 85.47 86.47 0.061638 0 0 0 0.93669 1 47565 47565 4.897 0 1 + 58702 20367 39234 40116 68402 68402 0.16141022376427827 SKQNATKL 8 Unmodified _SKQNATKL_ 0 0 0 ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830|BPTF;nc|ENSG00000171634|Q12830-4|BPTF ENSG00000171634|ENST00000306378|BPTF ENSG00000171634|ENST00000306378|BPTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.2593994140625 2 445.258717 888.50288 0.99224 0.0004418 -0.044087 -1.963E-05 0.94815 0.00042217 445.2584047736253 83.079 0.39989 76.903 76.624 77.024 -6.1757 26 21 2 0 0 0 0.77186 1 54636 54636 10.824 0 1 11184000 58703 8125 39235 40117 68403 68403 0.05416900754698872 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7369689941406 2 470.737094 939.459635 -0.29714 -0.00013988 -1.1748 -0.00055304 -1.472 -0.00069292 470.7366886350632 16.989 0.25006 16.989 16.845 17.095 0 180 66 3 0 0 0 0.05447 2 8366 8270;8366 43.858 7.8141 1 10433000 + 58704 26552 39236 40118 68404;68405 68405 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7373046875 2 470.737094 939.459635 -0.52192 -0.00024569 0.19356 9.1114E-05 -0.32836 -0.00015457 470.737172032679 17.336 0.10323 17.35 17.291 17.394 0.013865 44 25 3 0 0 0 0.1773 1 8590 8590 25.399 7.2643 1 1142800 + 58705 26552 39236 40118 68406 68406 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7382202148438 2 470.737094 939.459635 -0.056594 -2.6641E-05 -0.46809 -0.00022035 -0.52468 -0.00024699 470.73734551892153 17.149 0.10857 17.154 17.067 17.175 0.0050564 9 7 2 0 0 0 0.16226 1 8626 8626 26.884 11.036 1 459570 + 58706 26552 39236 40118 68407 68407 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7369689941406 2 470.737094 939.459635 0.41979 0.00019761 -0.090238 -4.2478E-05 0.32955 0.00015513 470.7370334591968 17.659 0.27761 15.073 14.971 15.249 -2.5866 100 38 3 0 0 0 0.070838 1 9236 9236 39.957 7.8404 1 29027000 + 58707 26552 39236 40118 68408 68408 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.737094 939.459635 -0.29714 -0.00013988 -1.1748 -0.00055304 -1.472 -0.00069292 470.7366886350632 16.989 0.25006 16.989 16.845 17.095 0 -0.17548 -0.00033445 NaN 43.858 180 66 3 NaN NaN NaN NaN 0 NaN NaN 0 10433000 + 58708 26552 39236 40118 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.737094 939.459635 -0.52192 -0.00024569 0.19356 9.1114E-05 -0.32836 -0.00015457 470.737172032679 17.336 0.10323 17.35 17.291 17.394 0.013865 0.18612 0.00095386 NaN 43.858 44 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1142800 + 58709 26552 39236 40118 -0.012516122942315633 SKQPCLHGA 9 Unmodified _SKQPCLHGA_ 0 0 0 REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF REV__ENST00000398004.3_1_12:69140027-69140429:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.737094 939.459635 -0.056594 -2.6641E-05 -0.46809 -0.00022035 -0.52468 -0.00024699 470.73734551892153 17.149 0.10857 17.154 17.067 17.175 0.0050564 -0.010641 0.00033094 NaN 43.858 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 459570 + 58710 26552 39236 40118 -0.012516122942315633 SKQSSAQTS 9 Unmodified _SKQSSAQTS_ 0 0 0 REV__ENSG00000036448|ENST00000262113|MYOM2 REV__ENSG00000036448|ENST00000262113|MYOM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2231140136719 2 462.225071 922.435589 NaN NaN NaN NaN NaN NaN NaN 16.919 1 16.919 16.419 17.419 0 0 0 0 0.15231 1 8295 8295 36.506 4.2007 1 + 58711 17168 39237 40119 68409 68409 -0.028731742469062738 SKRFHFVKLFT 11 Unmodified _SKRFHFVKLFT_ 0 0 0 ENST00000367059.3_2_1:207647596-207648195:+|nuORF ENST00000367059.3_2_1:207647596-207648195:+|nuORF ENST00000367059.3_2_1:207647596-207648195:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.2727661132812 4 353.206762 1408.79794 0.035006 1.2364E-05 0.52925 0.00018693 0.56425 0.0001993 353.2070484105629 55.223 0.27921 55.154 54.999 55.278 -0.068737 19 13 2 0 0 0 0.30604 1 30043 30043 0.094841 0 1 1391300 58712 12219 39238 40120 68410 68410 0.10989308893499583 SKRKILKAK 9 Unmodified _SKRKILKAK_ 0 0 0 ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 ENSG00000166669|ENST00000562102|ATF7IP2 MSMS AL20221201_MKP_PDAC_01 4 536.3719482421875 2 536.371675 1070.7288 NaN NaN NaN NaN NaN NaN NaN 105.73 1 99.558 99.058 100.06 -6.1757 0 0 0 0.8622 1 70825 70825 0 0 1 58713 7517 39239 40121 68411 68411 0.1962626966458174 SKRKKKKT 8 Unmodified _SKRKKKKT_ 0 0 0 ENST00000545698.1_1_12:104359668-104373681:+|nuORF ENST00000545698.1_1_12:104359668-104373681:+|nuORF ENST00000545698.1_1_12:104359668-104373681:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3406677246094 2 502.340375 1002.6662 1.6091 0.00080832 -1.1606 -0.00058303 0.44848 0.00022529 502.3394947920211 103.06 0.22597 96.881 96.798 97.024 -6.1757 83 62 2 0 0 0 0.81107 1 69107 69107 0 0 1 8046800 58714 15098 39240 40122 68412 68412 0.16497123596400343 SKRKKYIRK 9 Unmodified _SKRKKYIRK_ 0 0 0 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8927001953125 2 603.893306 1205.77206 -0.68058 -0.00041099 -0.83085 -0.00050174 -1.5114 -0.00091274 603.8927150587026 103.04 0.21164 102.99 102.88 103.1 -0.047928 15 8 2 0 0 0 0.62242 1 57243 57243 0 0 1 616660 + 58715 29561 39241 40123 68413 68413 0.17740459441847634 SKRKKYIRK 9 Unmodified _SKRKKYIRK_ 0 0 0 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 REV__nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 603.893306 1205.77206 -0.68058 -0.00041099 -0.83085 -0.00050174 -1.5114 -0.00091274 603.8927150587026 103.04 0.21164 102.99 102.88 103.1 -0.047928 0 0 NaN 0 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 616660 + 58716 29561 39241 40123 0.17740459441847634 SKRKPKVPER 10 Unmodified _SKRKPKVPER_ 0 0 0 nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS nc|ENSG00000188158|Q6T4R5-4|NHS nc|ENSG00000188158|Q6T4R5-4|NHS MSMS AL20221201_MKP_PDAC_01 4 408.9228515625 3 408.922689 1223.74624 NaN NaN NaN NaN NaN NaN NaN 101.1 1 94.926 94.426 95.426 -6.1757 0 0 0 1.0047 1 67767 67767 0.15932 0 1 58717 9632 39242 40124 68414 68414 0.14331565199586294 SKRKPLHLI 9 Unmodified _SKRKPLHLI_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MSMS AL20221201_MKP_PDAC_01 4 546.3552856445312 2 546.356025 1090.6975 NaN NaN NaN NaN NaN NaN NaN 108.51 1 102.33 101.83 102.83 -6.1757 0 0 0 0.85852 1 72518 72518 0.45834 0 1 58718 4107 39243 40125 68415 68415 0.15577696630498394 SKRKTKISRK 10 Unmodified _SKRKTKISRK_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.0667724609375 2 616.401496 1230.78844 NaN NaN NaN NaN NaN NaN NaN 104.16 1 104.11 103.61 104.61 -0.048737 0 0 0 1.0061 1 57832 57832 0 0 1 58719 445 39244 40126 68416 68416 0.18227540607949777 SKRKTKISRK 10 Unmodified _SKRKTKISRK_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17099415-17121458:-|nuORF ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.3999633789062 2 616.401496 1230.78844 NaN NaN NaN NaN NaN NaN NaN 104.2 1 104.15 103.65 104.65 -0.048737 0 0 0 1.0061 1 57855 57855 0 0 1 58720 445 39244 40126 68417 68417 0.18227540607949777 SKRPLDAHLAL 11 Unmodified _SKRPLDAHLAL_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5752258300781 3 407.575178 1219.70371 0.031963 1.3027E-05 0.29685 0.00012099 0.32881 0.00013402 407.5753887564008 39.291 0.34018 39.302 39.129 39.469 0.011452 34 15 3 0 0 0 0.65096 1 20982 20982 8.7518 0.46535 1 1846300 58721 1653 39245 40127 68418 68418 0.10264170071354783 SKRPLDAHLAL 11 Unmodified _SKRPLDAHLAL_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 407.575178 1219.70371 -0.024979 -1.0181E-05 -0.019859 -8.094E-06 -0.044838 -1.8275E-05 407.575115284976 39.659 0.16822 39.362 39.243 39.412 -0.29716 0.029678 -0.00026532 NaN 8.7518 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1742400 58722 1653 39245 40127 0.10264170071354783 SKRPLDAHLAL 11 Unmodified _SKRPLDAHLAL_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 407.575178 1219.70371 0.031963 1.3027E-05 0.29685 0.00012099 0.32881 0.00013402 407.5753887564008 39.291 0.34018 39.302 39.129 39.469 0.011452 -0.029678 0.00012193 NaN 8.7518 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 1846300 58723 1653 39245 40127 0.10264170071354783 SKRTNSIMLK 10 Unmodified _SKRTNSIMLK_ 0 0 0 REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2 REV__nc|ENSG00000185008|Q9HCK4-2|ROBO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.339599609375 2 589.339715 1176.66488 0.19276 0.0001136 -0.72467 -0.00042708 -0.53191 -0.00031348 589.3392158076941 76.568 0.77418 76.618 76.184 76.958 0.049522 94 32 4 0 0 0 0.38225 1 42279 42279 22.658 3.4011 1 60379000 + 58724 23461 39246 40128 68419 68419 0.08361121445341269 SKRTRERKRRR 11 Unmodified _SKRTRERKRRR_ 0 0 0 REV__ENST00000328969.5_1_20:62340221-62340320:+|nuORF REV__ENST00000328969.5_1_20:62340221-62340320:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3170776367188 3 510.317095 1527.92946 NaN NaN NaN NaN NaN NaN NaN 13.763 1 13.77 13.27 14.27 0.0073986 0 0 0 0.9435 1 6794 6794 0 0 1 + 58725 25582 39247 40129 68420 68420 0.1866093203393575 SKSGMRSP 8 Unmodified _SKSGMRSP_ 0 0 0 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 REV__nc|ENSG00000196498|Q9Y618-5|NCOR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2165222167969 2 425.215995 848.417436 NaN NaN NaN NaN NaN NaN NaN 49.57 1 49.521 49.021 50.021 -0.048824 0 0 0 0.97444 1 26783 26783 1.8442 1.0506 1 + 58726 23835 39248 40130 68421 68421 -0.012835877025963782 SKSIAYLQMNS 11 Unmodified _SKSIAYLQMNS_ 0 0 0 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.31298828125 2 621.313363 1240.61217 1.4644 0.00090988 -0.29187 -0.00018134 1.1726 0.00072854 621.3132109923455 91.885 0.35921 91.915 91.745 92.104 0.03019 38 12 4 0 0 0 0.39848 1 51074 51074 21.59 6.7519 1 11203000 58727 16539 39249 40131 68422 68422 0.0014911859186668153 SKSIAYLQMNS 11 Unmodified _SKSIAYLQMNS_ 0 0 0 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 nc|ENSG00000211965|A0A0A0MS15|IGHV3-49 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.312744140625 2 621.313363 1240.61217 0.79116 0.00049156 -0.67304 -0.00041817 0.11812 7.3389E-05 621.3134729613732 99.358 0.068192 93.182 93.159 93.228 -6.1757 6 4 2 0 0 0 0.39848 1 66164 66164 21.59 1.1365 1 34741000 58728 16539 39249 40131 68423 68423 0.0014911859186668153 SKSIMLITF 9 Unmodified _SKSIMLITF_ 0 0 0 REV__ENST00000359015.4_1_6:136958527-136960741:-|nuORF REV__ENST00000359015.4_1_6:136958527-136960741:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2946166992188 2 520.296453 1038.57835 0.54322 0.00028264 -1.5794 -0.00082178 -1.0362 -0.00053914 520.7971039706847 72.583 0.42903 72.107 72 72.429 -0.47609 29 19 3 0 0 0 0.47846 1 39732 39732 8.7454 0 1 1436400 + 58729 25885 39250 40132 68424 68424 0.0606074189076935 SKSPCWYEEF 10 Unmodified _SKSPCWYEEF_ 0 0 0 nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.184326171875 3 425.849868 1274.52777 0.84769 0.00036099 -0.030786 -1.311E-05 0.81691 0.00034788 425.8498773828357 91.002 0.29403 91.039 90.845 91.139 0.036499 17 10 2 0 0 0 0.5543 1 50608 50608 13.519 1.3439 1 6560400 58730 9010 39251 40133 68425 68425 -0.09850832224901751 SKSPCWYEEF 10 Unmodified _SKSPCWYEEF_ 0 0 0 nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 425.849868 1274.52777 0.41637 0.00017731 0.058317 2.4834E-05 0.47468 0.00020214 425.849833122375 91.604 0.3106 91.123 90.998 91.308 -0.48093 0.042145 6.2721E-05 NaN 13.519 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1228500 58731 9010 39251 40133 -0.09850832224901751 SKSRTTDTFRS 11 Unmodified _SKSRTTDTFRS_ 0 0 0 nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO MSMS AL20221201_MKP_PDAC_01 4 643.3283081054688 2 643.32839 1284.64223 NaN NaN NaN NaN NaN NaN NaN 10.15 1 7.6679 7.1679 8.1679 -2.482 0 0 0 0.9435 1 5115 5115 0 0 1 58732 9478 39252 40134 68426 68426 0.011291935813915188 SKSVATMMWMA 11 Unmodified _SKSVATMMWMA_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.8262329101562 2 621.787612 1241.56067 -0.0035505 -2.2077E-06 3.4718 0.0021587 3.4682 0.0021565 621.7901059945076 52.096 0.33642 52.096 51.996 52.332 0 21 14 2 0 0 0 0.61059 1 28758 28758 10.8 1.4164 1 1618500 + 58733 22834 39253 40135 68427 68427 -0.05044664698039014 SKTFLIKKQK 10 Unmodified _SKTFLIKKQK_ 0 0 0 ENST00000409788.7_1_2:231624786-231655623:+|nuORF ENST00000409788.7_1_2:231624786-231655623:+|nuORF ENST00000409788.7_1_2:231624786-231655623:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8908081054688 2 610.889898 1219.76524 1.5128 0.00092414 0.062317 3.8069E-05 1.5751 0.00096221 610.8897435017446 105.98 1.1324 99.802 99.547 100.68 -6.1757 488 179 3 0 0 0 0.71276 1 71241 71241 1.4819 0.28856 1 14405000 58734 12968 39254 40136 68428 68428 0.1641510177064447 SKVKGKKL 8 Unmodified _SKVKGKKL_ 0 0 0 REV__ENSG00000164070|ENST00000296464|HSPA4L REV__ENSG00000164070|ENST00000296464|HSPA4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.3064270019531 2 444.30547 886.596387 1.7117 0.00076054 0.55772 0.0002478 2.2695 0.0010083 444.30557808730856 108.48 2.2758 102.3 100.86 103.14 -6.1757 625 410 2 0 0 0 0.80992 2 72777 72777;72888 0.69038 0 1 12439000 + 58735 21859 39255 40137 68429;68430 68429 0.14855244927798594 SKVKGKKL 8 Unmodified _SKVKGKKL_ 0 0 0 REV__ENSG00000164070|ENST00000296464|HSPA4L REV__ENSG00000164070|ENST00000296464|HSPA4L MSMS AL20221201_MKP_PDAC_01 4 444.3066101074219 2 444.30547 886.596387 NaN NaN NaN NaN NaN NaN NaN 109.29 1 103.11 102.61 103.61 -6.1757 0 0 0 0.97444 1 72994 72994 0.69038 0 1 + 58736 21859 39255 40137 68431 68431 0.14855244927798594 SKVKGKKL 8 Unmodified _SKVKGKKL_ 0 0 0 REV__ENSG00000164070|ENST00000296464|HSPA4L REV__ENSG00000164070|ENST00000296464|HSPA4L MSMS AL20221201_MKP_PDAC_01 4 444.3072204589844 2 444.30547 886.596387 NaN NaN NaN NaN NaN NaN NaN 109.47 1 103.29 102.79 103.79 -6.1757 0 0 0 0.97444 1 73106 73106 0.69038 0 1 + 58737 21859 39255 40137 68432 68432 0.14855244927798594 SKVKRTRPRLR 11 Unmodified _SKVKRTRPRLR_ 0 0 0 REV__ENSG00000100365|ENST00000248899|NCF4 REV__ENSG00000100365|ENST00000248899|NCF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.454833984375 2 698.952218 1395.88988 -0.47697 -0.00033338 -0.29228 -0.00020429 -0.76925 -0.00053767 699.4533320006173 103.47 0.11098 103.42 103.38 103.49 -0.047928 6 4 2 0 0 0 0.74244 1 57495 57495 0.26902 0.26902 1 3166900 + 58738 18052 39256 40138 68433 68433 0.2077741203054302 SKWEGTVPDY 10 Unmodified _SKWEGTVPDY_ 0 0 0 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 REV__nc|ENSG00000114796|Q6TFL4-2|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.5189514160156 3 394.520628 1180.54005 -0.35705 -0.00014086 -2.0993 -0.00082821 -2.4563 -0.00096907 394.8530235394718 23.417 0.16192 23.417 23.367 23.529 0 7 5 2 0 0 0 0.71413 1 11966 11966 0.56317 0 1 792590 + 58739 18933 39257 40139 68434 68434 -0.042994724901973314 SKWIPGRG 8 Unmodified _SKWIPGRG_ 0 0 0 REV__ENST00000573953.1_1_16:3108066-3108384:-|nuORF REV__ENST00000573953.1_1_16:3108066-3108384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7563781738281 2 450.756144 899.497735 0.72501 0.0003268 0.90848 0.0004095 1.6335 0.00073631 450.7565051410217 73.85 0.3555 73.894 73.672 74.028 0.043983 28 16 3 0 0 0 0.80763 1 40674 40674 2.0598 0 1 4274000 + 58740 29001 39258 40140 68435 68435 0.04396641682762947 SKYCRFNQDPE 11 Unmodified _SKYCRFNQDPE_ 0 0 0 nc|ENSG00000107669|O95260-2|ATE1;ENSG00000107669|ENST00000224652|ATE1 nc|ENSG00000107669|O95260-2|ATE1 nc|ENSG00000107669|O95260-2|ATE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.8096313476562 2 693.808976 1385.6034 0.1385 9.6092E-05 0.89346 0.00061989 1.032 0.00071599 693.8091499352827 22.351 0.24368 19.617 19.522 19.765 -2.7348 16 12 2 0 0 0 0.69316 1 11999 11999 4.897 0 1 1817100 58741 2509 39259 40141 68436 68436 -0.07397855044609969 SKYCSISTDK 10 Unmodified _SKYCSISTDK_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8494567871094 3 377.849868 1130.52777 0.25428 9.608E-05 0.12923 4.8829E-05 0.38351 0.00014491 377.84994627067215 38.352 0.35693 38.352 38.22 38.577 0 87 28 4 0 0 0 0.23548 1 20423 20423 27.088 7.1015 1 50785000 + 58742 17541 39260 40142 68437 68437 -0.03226832224891041 SKYCSISTDK 10 Unmodified _SKYCSISTDK_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 377.849868 1130.52777 0.25428 9.608E-05 0.12923 4.8829E-05 0.38351 0.00014491 377.84994627067215 38.352 0.35693 38.352 38.22 38.577 0 -0.00043537 -3.4125E-05 NaN 27.088 87 28 4 NaN NaN NaN NaN 0 NaN NaN 0 50785000 + 58743 17541 39260 40142 -0.03226832224891041 SKYCSISTDK 10 Unmodified _SKYCSISTDK_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 377.849868 1130.52777 0.0030309 1.1452E-06 0.22624 8.5484E-05 0.22927 8.6629E-05 377.84991902549706 38.639 0.34574 38.352 38.196 38.541 -0.28687 0.00043537 7.5841E-05 NaN 27.088 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 9980300 + 58744 17541 39260 40142 -0.03226832224891041 SKYELYYLY 9 Unmodified _SKYELYYLY_ 0 0 0 ENST00000592790.1_1_17:57919097-57919235:+|nuORF ENST00000592790.1_1_17:57919097-57919235:+|nuORF ENST00000592790.1_1_17:57919097-57919235:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3090209960938 2 621.308072 1240.60159 NaN NaN NaN NaN NaN NaN NaN 91.372 1 91.372 90.872 91.872 0 0 0 0 0.85852 1 50533 50533 0.45834 0 1 58745 15724 39261 40143 68438 68438 -0.0090854079089695 SKYEPGIKF 9 Unmodified _SKYEPGIKF_ 0 0 0 REV__nc|ENSG00000179889|Q6P996-3|PDXDC1 REV__nc|ENSG00000179889|Q6P996-3|PDXDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8622741699219 3 356.862325 1067.56515 -0.26282 -9.379E-05 0.06781 2.4199E-05 -0.19501 -6.9591E-05 356.862335878899 35.427 0.33 35.427 35.285 35.615 0 51 16 4 0 0 0 0.5029 1 18679 18679 4.5289 1.5336 1 99930000 + 58746 23125 39262 40144 68439 68439 0.034066271030496864 SKYEPGIKF 9 Unmodified _SKYEPGIKF_ 0 0 0 REV__nc|ENSG00000179889|Q6P996-3|PDXDC1 REV__nc|ENSG00000179889|Q6P996-3|PDXDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.86279296875 3 356.862325 1067.56515 0.9651 0.00034441 -0.086561 -3.089E-05 0.87854 0.00031352 356.86219202378953 39.965 1.3873 35.435 35.14 36.528 -4.5294 289 98 5 0 0 0 0.19127 1 23677 23677 17.443 2.1942 1 2389400000 + 58747 23125 39262 40144 68440 68440 0.034066271030496864 SKYLEIDLSM 10 Unmodified _SKYLEIDLSM_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.802001953125 2 599.804839 1197.59513 0.15096 9.0548E-05 -3.2711 -0.001962 -3.1201 -0.0018715 599.8026895723028 42.257 0.20274 42.257 42.179 42.382 0 14 9 2 0 0 0 0.64628 1 22881 22881 8.7454 0 1 2334100 58748 9454 39263 40145 68441 68441 0.004231979860833235 SKYLEIDLSM 10 Unmodified _SKYLEIDLSM_ 0 0 0 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 ENSG00000186130|ENST00000373659|ZBTB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.803466796875 2 599.804839 1197.59513 0.66642 0.00039972 -0.55155 -0.00033082 0.11487 6.8902E-05 599.8046747571095 42.622 0.21222 42.622 42.524 42.737 0 14 10 2 0 0 0 0.64628 1 23103 23103 8.7454 0 1 1700900 58749 9454 39263 40145 68442 68442 0.004231979860833235 SLAAAEGC 8 Unmodified _SLAAAEGC_ 0 0 0 REV__ENST00000344651.4_1_12:121158399-121158492:+|nuORF REV__ENST00000344651.4_1_12:121158399-121158492:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.1646118164062 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 93.449 1 87.274 86.774 87.774 -6.1757 0 0 0 0.97444 1 61851 61851 5.2307 0 1 + 58750 25744 39264 40146 68443 68443 -0.0601034326792842 SLAANTFTI 9 Unmodified _SLAANTFTI_ 0 0 0 nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 nc|ENSG00000145741|P20290-2|BTF3 nc|ENSG00000145741|P20290-2|BTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7545776367188 2 469.2531 936.491647 0.18278 8.5771E-05 0.73652 0.00034562 0.9193 0.00043139 469.25337149255415 66.528 0.26913 66.045 65.902 66.171 -0.48323 22 12 2 0 0 0 0.30562 1 36325 36325 16.942 1.0951 1 1857700 58751 5722 39265 40147 68444 68444 0.0208607866057946 SLAANTFTI 9 Unmodified _SLAANTFTI_ 0 0 0 nc|ENSG00000145741|P20290-2|BTF3;ENSG00000145741|ENST00000380591|BTF3 nc|ENSG00000145741|P20290-2|BTF3 nc|ENSG00000145741|P20290-2|BTF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 937.501953125 1 937.498923 936.491647 0.12943 0.00012134 0.45586 0.00042737 0.58529 0.00054871 937.4997573681533 66.54 0.22517 66.057 65.925 66.15 -0.48323 15 10 2 0 0 0 0.23158 1 36342 36342 20.454 6.5476 1 701400 58752 5722 39265 40147 68445 68445 0.0208607866057946 SLADDSVLERL 11 Unmodified _SLADDSVLERL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.3225708007812 2 609.322242 1216.62993 NaN NaN NaN NaN NaN NaN NaN 64.368 1 64.368 63.868 64.868 0 0 0 0 0.87179 1 35897 35897 14.218 7.495 1 58753 2865 39266 40148 68446 68446 0.03028157118387753 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7826538085938 2 479.782025 957.549496 0.37796 0.00018134 -1.0726 -0.00051461 -0.69463 -0.00033327 479.7817574708037 59.263 0.23856 59.263 59.068 59.307 0 12 9 2 0 0 0 0.10247 1 33004 33004 32.786 14.639 1 1535900 58754 2559 39267 40149 68447 68447 0.06902340586009359 SLADIAQKL 9 Unmodified _SLADIAQKL_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000485835.1_1_17:38151035-38151804:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.78125 2 479.782025 957.549496 0.42552 0.00020416 -0.45254 -0.00021712 -0.027025 -1.2966E-05 479.78182072590846 59.74 0.20308 59.249 59.11 59.313 -0.49079 16 9 2 0 0 0 0.07087 1 32460 32460 39.95 15.929 1 2300900 58755 2559 39267 40149 68448 68448 0.06902340586009359 SLADLQNDEV 10 Unmodified _SLADLQNDEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2640380859375 2 552.264393 1102.51423 -0.12719 -7.0241E-05 0.17732 9.7927E-05 0.050132 2.7686E-05 552.2645121886941 48.512 0.40207 48.512 48.293 48.695 0 56 19 4 0 0 0 0.1028 2 26541 26541;26665 62.573 26.446 1 23181000 58756 5696 39268 40150 68449;68450 68449 -0.032923667324666894 SLADLQNDEV 10 Unmodified _SLADLQNDEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2647094726562 2 552.264393 1102.51423 0.60413 0.00033364 0.047221 2.6078E-05 0.65135 0.00035972 552.2644147193971 56.906 0.36396 50.929 50.736 51.1 -5.9769 44 21 3 0 0 0 0.053349 1 36288 36288 75.761 37.146 1 52978000 58757 5696 39268 40150 68451 68451 -0.032923667324666894 SLADLQNDEV 10 Unmodified _SLADLQNDEV_ 0 0 0 ENSG00000145425|ENST00000274065|RPS3A;ENST00000389400.4_1_10:86320393-86320726:+|nuORF ENSG00000145425|ENST00000274065|RPS3A ENSG00000145425|ENST00000274065|RPS3A MSMS AL20221201_MKP_PDAC_01 4 552.2642211914062 2 552.264393 1102.51423 NaN NaN NaN NaN NaN NaN NaN 56.993 1 51.016 50.516 51.516 -5.9769 0 0 0 0.55039 1 36419 36419 34.402 15.145 1 58758 5696 39268 40150 68452 68452 -0.032923667324666894 SLADLYFRA 9 Unmodified _SLADLYFRA_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2797241210938 2 528.279649 1054.54475 -0.040095 -2.1181E-05 -1.1482 -0.00060655 -1.1883 -0.00062773 528.2792488527112 65.748 0.23631 65.264 65.124 65.36 -0.48428 12 9 2 0 0 0 0.044011 1 35895 35895 47.749 11.622 1 2808100 58759 9832 39269 40151 68453 68453 0.0196545644323578 SLADYITAA 9 Unmodified _SLADYITAA_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.4627685546875 1 924.467289 923.460012 0.15782 0.0001459 -0.58866 -0.0005442 -0.43084 -0.00039829 924.4659994952885 62.029 0.19258 62.029 61.929 62.122 0 10 7 2 0 0 0 0.16226 1 34578 34578 26.884 2.2098 1 893350 58760 7502 39270 40152 68454 68454 -0.004779140934033421 SLAEADSAL 9 Unmodified _SLAEADSAL_ 0 0 0 REV__ENST00000569516.5_1_16:904534-921479:-|nuORF REV__ENST00000569516.5_1_16:904534-921479:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4300537109375 1 876.430903 875.423627 1.531 0.0013418 -3.0156 -0.002643 -1.4847 -0.0013012 876.4282500202238 100.98 0.11604 94.799 94.734 94.85 -6.1757 10 6 2 0 0 0 0.019303 1 67654 67654 64.236 0.67347 1 32511000 + 58761 28960 39271 40153 68455 68455 -0.019067909900968516 SLAEDVLTV 9 Unmodified _SLAEDVLTV_ 0 0 0 nc|ENSG00000101400|Q13424-2|SNTA1;ENSG00000101400|ENST00000217381|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 nc|ENSG00000101400|Q13424-2|SNTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.5084838867188 1 946.509154 945.501877 -0.20434 -0.00019341 0.045597 4.3158E-05 -0.15874 -0.00015025 946.5083798731171 68.63 0.17595 68.63 68.564 68.74 0 11 7 2 0 0 0 0.16226 1 38255 38255 26.884 5.137 1 321020 58762 1959 39272 40154 68456 68456 0.02694641595144276 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2656860351562 2 497.266207 992.517862 0.45418 0.00022585 0.573 0.00028493 1.0272 0.00051078 497.26645541953104 86.926 0.3686 86.423 86.217 86.586 -0.50318 41 14 4 0 0 0 0.047196 2 47514 47514;47618 46.021 17.534 1 3450400 58763 9567 39273 40155 68457;68458 68457 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 993.5244750976562 1 993.525138 992.517862 0.37612 0.00037368 -0.49557 -0.00049236 -0.11945 -0.00011868 993.5250375169968 86.933 0.19678 86.43 86.32 86.517 -0.50318 11 7 2 0 0 0 0.19127 1 47561 47561 24.021 3.5669 1 536700 58764 9567 39273 40155 68459 68459 0.02130347832053303 SLAEFVQSL 9 Unmodified _SLAEFVQSL_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7;ENST00000567329.1_1_16:8996189-8998378:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2661437988281 2 497.266207 992.517862 0.30834 0.00015333 0.18157 9.0288E-05 0.48991 0.00024362 497.2661887177572 99.018 0.13033 92.842 92.778 92.908 -6.1757 15 7 3 0 0 0 0.022193 1 65822 65822 61.357 19.518 1 49842000 58765 9567 39273 40155 68460 68460 0.02130347832053303 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2725524902344 2 473.271824 944.529095 0.017266 8.1715E-06 -0.67886 -0.00032129 -0.6616 -0.00031311 473.2714058601883 40.422 0.52496 40.422 40.214 40.739 0 88 27 5 0 0 0 0.021948 2 21647 21647;21759 61.602 12.048 1 649840000 58766 2781 39274 40156 68461;68462 68461 0.05461169926184084 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.5362548828125 1 945.536372 944.529095 -0.53061 -0.00050171 -0.80354 -0.00075977 -1.3341 -0.0012615 945.5360451300975 40.421 0.17689 40.421 40.333 40.51 0 15 8 2 0 0 0 0.091924 1 21703 21703 34.932 8.6639 1 3426600 58767 2781 39274 40156 68463 68463 0.05461169926184084 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2718200683594 2 473.271824 944.529095 0.70219 0.00033233 -0.22912 -0.00010843 0.47307 0.00022389 473.2717195892986 40.708 0.3488 40.405 40.214 40.563 -0.30304 50 16 4 0 0 0 0.026499 2 21477 21477;21579 57.249 11.73 1 66497000 58768 2781 39274 40156 68464;68465 68464 0.05461169926184084 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2725524902344 2 473.271824 944.529095 0.34904 0.00016519 -0.275 -0.00013015 0.074044 3.5043E-05 473.27170484393173 40.396 0.27309 40.401 40.256 40.529 0.0050545 30 12 3 0 0 0 0.021948 1 21516 21516 61.602 12.048 1 6017700 58769 2781 39274 40156 68466 68466 0.05461169926184084 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2720336914062 2 473.271824 944.529095 0.59899 0.00028349 -0.26656 -0.00012616 0.33243 0.00015733 473.2715771039729 46.01 0.68389 41.055 40.745 41.429 -4.9549 153 45 5 0 0 0 0.018061 4 28577 28161;28299;28438;28577 65.474 11.509 1 1593699999.9999998 58770 2781 39274 40156 68467;68468;68469;68470 68470 0.05461169926184084 SLAEGLRTV 9 Unmodified _SLAEGLRTV_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 945.538330078125 1 945.536372 944.529095 0.055704 5.267E-05 0.67264 0.00063601 0.72835 0.00068868 945.5370192649428 46.041 0.39207 41.087 40.863 41.255 -4.9549 45 25 2 0 0 0 0.0020017 2 28251 28251;28391 132.38 46.048 1 29236000 58771 2781 39274 40156 68471;68472 68471 0.05461169926184084 SLAEGRLYL 9 Unmodified _SLAEGRLYL_ 0 0 0 ENSG00000135931|ENST00000611582|ARMC9;nc|ENSG00000135931|Q7Z3E5-2|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 ENSG00000135931|ENST00000611582|ARMC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2904052734375 2 511.287474 1020.5604 -0.15671 -8.0124E-05 0.24897 0.00012729 0.092257 4.717E-05 511.28784051856246 54.548 0.26742 54.082 53.934 54.201 -0.46664 31 13 3 0 0 0 0.040683 1 29533 29533 49.554 11.58 1 6536000 58772 4763 39275 40157 68473 68473 0.05093742960275449 SLAEKIQAL 9 Unmodified _SLAEKIQAL_ 0 0 0 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.790283203125 2 486.78985 971.565146 0.40871 0.00019896 -0.33677 -0.00016394 0.071943 3.5021E-05 486.78979094991723 48.855 0.26595 48.483 48.35 48.616 -0.37172 21 13 2 0 0 0 0.011291 1 26199 26199 76.825 14.252 1 4672600 58773 5916 39276 40158 68474 68474 0.07822627103041668 SLAEKIQAL 9 Unmodified _SLAEKIQAL_ 0 0 0 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7908630371094 2 486.78985 971.565146 0.82713 0.00040264 0.1492 7.2631E-05 0.97633 0.00047527 486.7902481923925 54.497 0.36626 48.632 48.469 48.835 -5.8653 37 22 2 0 0 0 0.0086722 1 34523 34523 88.954 14.754 1 41676000 58774 5916 39276 40158 68475 68475 0.07822627103041668 SLAEKIQAL 9 Unmodified _SLAEKIQAL_ 0 0 0 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 ENSG00000148331|ENST00000277458|ASB6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 486.78985 971.565146 0.52952 0.00025777 -1.7164 -0.00083555 -1.1869 -0.00057778 486.7896641187699 48.511 0.080582 48.467 48.415 48.495 -0.04369 -0.060062 -0.0013961 NaN 88.954 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 710650 58775 5916 39276 40158 0.07822627103041668 SLAELHFLL 9 Unmodified _SLAELHFLL_ 0 0 0 REV__nc|ENSG00000204655|Q16653-6|MOG REV__nc|ENSG00000204655|Q16653-6|MOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8001098632812 2 521.800217 1041.58588 1.1071 0.00057769 -2.6957 -0.0014066 -1.5886 -0.00082892 521.7982882738005 99.347 0.20885 93.171 93.097 93.306 -6.1757 19 13 2 0 0 0 0.052168 1 66117 66117 44.407 4.4573 1 110690000 + 58776 29911 39277 40159 68476 68476 0.0667521748271156 SLAELSFLN 9 Unmodified _SLAELSFLN_ 0 0 0 ENST00000360900.10_3_16:86564750-86564960:-|nuORF ENST00000360900.10_3_16:86564750-86564960:-|nuORF ENST00000360900.10_3_16:86564750-86564960:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.5300903320312 1 993.525138 992.517862 0.37612 0.00037368 -0.49557 -0.00049236 -0.11945 -0.00011868 993.5250375169968 86.933 0.19678 86.43 86.32 86.517 -0.50318 11 7 2 0 0 0 0.59218 1 47575 47575 1.8442 0 1 536700 58777 12173 39278 40160 68477 68477 0.021303478320419345 SLAERVDRL 9 Unmodified _SLAERVDRL_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8709106445312 3 353.536612 1057.58801 -1.2921 -0.00045681 0.081155 2.8691E-05 -1.211 -0.00042812 353.53653886985336 32.419 0.19716 32.419 32.297 32.495 0 17 12 2 0 0 0 0.044296 1 16931 16931 37.771 7.3399 1 5439400 58778 6571 39279 40161 68478 68478 0.06151646220519069 SLAERVDRL 9 Unmodified _SLAERVDRL_ 0 0 0 nc|ENSG00000158195|Q9Y6W5-2|WASF2;ENSG00000158195|ENST00000618852|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 nc|ENSG00000158195|Q9Y6W5-2|WASF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5370483398438 3 353.536612 1057.58801 1.5223 0.0005382 0.94468 0.00033398 2.467 0.00087218 353.5369377150223 36.747 0.3252 32.464 32.324 32.65 -4.2835 33 19 2 0 0 0 0.085319 1 21428 21428 28.234 13.276 1 11923000 58779 6571 39279 40161 68479 68479 0.06151646220519069 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.786376953125 2 500.787307 999.560061 0.38085 0.00019072 0.01319 6.6056E-06 0.39404 0.00019733 500.7871652001333 87.512 0.30421 87.512 87.358 87.662 0 23 13 2 0 0 0 0.32871 1 48430 48430 15.847 6.4641 1 845730 58780 663 39280 40162 68480 68480 0.06026323240439524 SLAEVLQQL 9 Unmodified _SLAEVLQQL_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENST00000482694.1_1_2:85577073-85578124:-|nuORF ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7875366210938 2 500.787307 999.560061 0.21213 0.00010623 0.029543 1.4795E-05 0.24167 0.00012103 500.78736347052853 88.046 0.39017 87.542 87.36 87.75 -0.50423 45 17 3 0 0 0 0.026094 2 48200 48103;48200 57.471 15.377 1 4907900 58781 663 39280 40162 68481;68482 68482 0.06026323240439524 SLAFRTRDS 9 Unmodified _SLAFRTRDS_ 0 0 0 nc|ENSG00000148204|Q5IJ48-3|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.5213928222656 3 351.520962 1051.54106 0.40667 0.00014295 0.50559 0.00017772 0.91226 0.00032068 351.52093530252097 49.096 0.24673 48.724 48.635 48.882 -0.37172 18 11 2 0 0 0 0.39863 1 26399 26399 8.1555 0 1 1825800 58782 5903 39281 40163 68483 68483 0.0173478666936262 SLAGDVALQQL 11 Unmodified _SLAGDVALQQL_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.8095092773438 2 557.808771 1113.60299 0.62286 0.00034743 -0.27655 -0.00015426 0.34631 0.00019317 557.8085938136409 66.591 0.30434 66.591 66.421 66.725 0 24 13 2 0 0 0 0.10551 1 37123 37123 41.84 20.093 1 2769300 58783 418 39282 40164 68484 68484 0.05073093297869491 SLAGELQSK 9 Unmodified _SLAGELQSK_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 935.512939453125 1 932.504737 931.497461 0.62492 0.00058274 -0.05765 -5.3759E-05 0.56727 0.00052898 932.5046096465379 45.529 0.59512 40.574 40.299 40.894 -4.9549 130 40 4 0 0 0 0.070838 1 27860 27860 39.957 9.3208 1 357800000 + 58784 19763 39283 40165 68485 68485 0.028971771722467565 SLAGNGRF 8 Unmodified _SLAGNGRF_ 0 0 0 REV__nc|ENSG00000196233|Q96JN0-2|LCOR REV__nc|ENSG00000196233|Q96JN0-2|LCOR MSMS AL20221201_MKP_PDAC_01 4 411.2174987792969 2 411.216852 820.419151 NaN NaN NaN NaN NaN NaN NaN 21.557 1 18.823 18.323 19.323 -2.7348 0 0 0 0.80403 1 11559 11559 23.148 8.3102 1 + 58785 29877 39284 40166 68486 68486 0.0017578937766984382 SLAGNKRH 8 Unmodified _SLAGNKRH_ 0 0 0 REV__ENST00000397477.2_1_22:32665849-32666506:+|nuORF REV__ENST00000397477.2_1_22:32665849-32666506:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7495727539062 2 441.74885 881.483148 0.32747 0.00014466 0.09137 4.0363E-05 0.41884 0.00018502 441.74887726720544 23.678 0.54689 20.851 20.595 21.142 -2.8273 74 32 3 0 0 0 0.74163 1 12753 12753 13.508 0.97634 1 28971000 + 58786 26537 39285 40167 68487 68487 0.03766569534604969 SLAGPILSL 9 Unmodified _SLAGPILSL_ 0 0 0 nc|ENSG00000121853|Q92847-2|GHSR nc|ENSG00000121853|Q92847-2|GHSR nc|ENSG00000121853|Q92847-2|GHSR MSMS AL20221201_MKP_PDAC_01 4 435.7687377929688 2 435.768386 869.522219 NaN NaN NaN NaN NaN NaN NaN 86.765 1 80.589 80.089 81.089 -6.1757 0 0 0 0.08978 1 57202 57202 46.021 6.0713 1 58787 16160 39286 40168 68488 68488 0.08223857045629757 SLAGRSLL 8 Unmodified _SLAGRSLL_ 0 0 0 ENST00000599637.5_1_19:53594692-53594911:-|nuORF ENST00000599637.5_1_19:53594692-53594911:-|nuORF ENST00000599637.5_1_19:53594692-53594911:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.750732421875 2 408.750527 815.486502 NaN NaN NaN NaN NaN NaN NaN 106.96 1 100.78 100.28 101.28 -6.1757 0 0 0 0.97348 1 71567 71567 5.7604 0 1 58788 15791 39287 40169 68489 68489 0.07137819588615457 SLAGRSLL 8 Unmodified _SLAGRSLL_ 0 0 0 ENST00000599637.5_1_19:53594692-53594911:-|nuORF ENST00000599637.5_1_19:53594692-53594911:-|nuORF ENST00000599637.5_1_19:53594692-53594911:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.7517395019531 2 408.750527 815.486502 NaN NaN NaN NaN NaN NaN NaN 107.23 1 101.05 100.55 101.55 -6.1757 0 0 0 0.97444 1 71732 71732 2.5775 0 1 58789 15791 39287 40169 68490 68490 0.07137819588615457 SLAGSPEPY 9 Unmodified _SLAGSPEPY_ 0 0 0 REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.434814453125 1 920.435989 919.428712 0.41771 0.00038448 0.37546 0.00034559 0.79317 0.00073007 920.4359750166271 53.316 0.36612 53.316 53.12 53.486 0 24 15 2 0 0 0 0.32871 1 29587 29587 15.847 3.3156 1 2476300 + 58790 29385 39288 40170 68491 68491 -0.03422487127477325 SLAGSPEPY 9 Unmodified _SLAGSPEPY_ 0 0 0 REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.4398803710938 1 920.435989 919.428712 0.65526 0.00060313 1.4249 0.0013115 2.0801 0.0019146 920.4373082986878 64.97 0.35567 58.794 58.644 59 -6.1757 28 19 2 0 0 0 0.14602 2 42240 42101;42240 28.487 6.7402 1 7730900 + 58791 29385 39288 40170 68492;68493 68493 -0.03422487127477325 SLAGSPEPY 9 Unmodified _SLAGSPEPY_ 0 0 0 REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant REV__HOXC13|p.P161S|1|0.2|ENSG00000123364|chr12:53939387-53939387|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 920.435989 919.428712 0.41771 0.00038448 0.37546 0.00034559 0.79317 0.00073007 920.4359750166271 53.316 0.36612 53.316 53.12 53.486 0 0 0 NaN 15.847 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2476300 + 58792 29385 39288 40170 -0.03422487127477325 SLAKHKII 8 Unmodified _SLAKHKII_ 0 0 0 ENSG00000223614|ENST00000429565|ZNF735;ENSG00000241149|ENST00000330020|ZNF722;ENSG00000185177|ENST00000319636|ZNF479 ENSG00000223614|ENST00000429565|ZNF735 ENSG00000223614|ENST00000429565|ZNF735 MSMS AL20221201_MKP_PDAC_01 4 455.2984008789062 2 455.297645 908.580737 NaN NaN NaN NaN NaN NaN NaN 103.78 1 97.605 97.105 98.105 -6.1757 0 0 0 0.97444 1 69553 69553 0.69038 0 1 58793 10574 39289 40171 68494 68494 0.12278958410763607 SLAKVRWN 8 Unmodified _SLAKVRWN_ 0 0 0 REV__nc|ENSG00000134317|Q9NZI5-3|GRHL1 REV__nc|ENSG00000134317|Q9NZI5-3|GRHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.560546875 1 973.557776 972.550499 -0.058388 -5.6844E-05 -1.6993 -0.0016544 -1.7577 -0.0017112 973.5557488483848 51.837 0.26346 51.837 51.689 51.953 0 24 11 3 0 0 0 0.80311 1 28681 28681 4.756 0 1 6299500 + 58794 29639 39290 40172 68495 68495 0.06312599745569969 SLALHDTNY 9 Unmodified _SLALHDTNY_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-11|SORBS1 REV__nc|ENSG00000095637|Q9BX66-11|SORBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.250732421875 2 517.251089 1032.48762 0.32158 0.00016634 -0.89588 -0.00046339 -0.5743 -0.00029706 517.2507147941592 31.277 0.20336 31.277 31.194 31.398 0 18 9 3 0 0 0 0.2001 1 16293 16293 23.148 6.2061 1 1757400 + 58795 17948 39291 40173 68496 68496 -0.0273201083314234 SLALHDTNY 9 Unmodified _SLALHDTNY_ 0 0 0 REV__nc|ENSG00000095637|Q9BX66-11|SORBS1 REV__nc|ENSG00000095637|Q9BX66-11|SORBS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.249755859375 2 517.251089 1032.48762 1.3323 0.00068914 -2.7526 -0.0014238 -1.4203 -0.00073466 517.2504631587768 35.96 0.33445 31.767 31.613 31.948 -4.1928 34 20 2 0 0 0 0.23158 1 20904 20904 20.454 3.5113 1 10356000 + 58796 17948 39291 40173 68497 68497 -0.0273201083314234 SLALTVPVL 9 Unmodified _SLALTVPVL_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.7935791015625 2 456.791861 911.569169 NaN NaN NaN NaN NaN NaN NaN 30.324 1 30.354 29.854 30.854 0.030106 0 0 0 0.83049 1 15852 15852 3.9444 0 1 58797 10858 39292 40174 68498 68498 0.10984716596760791 SLANETHQL 9 Unmodified _SLANETHQL_ 0 0 0 nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF nc|ENSG00000168884|Q8NFZ5-2|TNIP2 nc|ENSG00000168884|Q8NFZ5-2|TNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7569274902344 2 506.756538 1011.49852 -0.29568 -0.00014984 -0.44851 -0.00022729 -0.74419 -0.00037713 506.75637866495686 28.611 0.18033 28.611 28.503 28.683 0 18 8 3 0 0 0 0.010611 1 14780 14780 78.728 44.326 1 4708100 58798 7808 39293 40175 68499 68499 -0.006766084588548438 SLAPGFRQRSL 11 Unmodified _SLAPGFRQRSL_ 0 0 0 ENST00000569571.5_1_16:68344944-68349804:+|nuORF ENST00000569571.5_1_16:68344944-68349804:+|nuORF ENST00000569571.5_1_16:68344944-68349804:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.23583984375 3 411.235045 1230.6833 -0.3574 -0.00014698 1.4382 0.00059145 1.0808 0.00044447 411.2356562851459 37.257 0.19732 37.278 37.153 37.35 0.021542 15 8 2 0 0 0 0.5229 1 19751 19751 12.228 0 1 1679400 58799 15459 39294 40176 68500 68500 0.0771899941155425 SLAPHKGSFSG 11 Unmodified _SLAPHKGSFSG_ 0 0 0 ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;nc|ENSG00000019144|Q86UU1-3|PHLDB1 ENST00000532517.5_1_11:118498004-118527530:+|nuORF ENST00000532517.5_1_11:118498004-118527530:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.281982421875 2 544.28018 1086.54581 0.18601 0.00010124 0.49377 0.00026875 0.67978 0.00036999 544.2805867524098 68.5 0.27951 68.019 67.901 68.18 -0.48071 26 12 3 0 0 0 0.59689 1 37434 37434 11.495 2.1473 1 2227800 58800 514 39295 40177 68501 68501 0.005996708121301708 SLAPLFFKL 9 Unmodified _SLAPLFFKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.3157348632812 2 518.315503 1034.61645 1.7006 0.00088145 -0.80844 -0.00041903 0.89215 0.00046242 518.3150573374231 92.779 0.26958 92.809 92.675 92.945 0.030197 20 10 2 0 0 0 0.08691 1 51580 51580 36.127 14.38 1 3869900 58801 889 39296 40178 68502 68502 0.10052995867749814 SLAPLFFKL 9 Unmodified _SLAPLFFKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7831420898438 2 518.315503 1034.61645 0.28257 0.00014646 -0.65437 -0.00033917 -0.37181 -0.00019271 518.3155081076598 99.818 0.11713 93.643 93.574 93.691 -6.1757 19 8 3 0 0 0 0.14225 1 66587 66587 30.637 12.502 1 42175000 58802 889 39296 40178 68503 68503 0.10052995867749814 SLAPTLGL 8 Unmodified _SLAPTLGL_ 0 0 0 REV__ENST00000424085.6_1_1:31532208-31532262:-|nuORF REV__ENST00000424085.6_1_1:31532208-31532262:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.8664245605469 2 386.234179 770.453805 1.6206 0.00062595 3.4138 0.0013185 5.0344 0.0019445 386.23555439766875 53.776 0.33672 47.972 47.863 48.2 -5.8042 24 20 2 0 0 0 8.7369 1 34170 34170 5.2307 0 1 13760000 + 58803 26873 39297 40179 68504 68504 0.05939612465761002 SLAPTLGL 8 Unmodified _SLAPTLGL_ 0 0 0 REV__ENST00000424085.6_1_1:31532208-31532262:-|nuORF REV__ENST00000424085.6_1_1:31532208-31532262:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 386.234179 770.453805 0.35224 0.00013605 6.1893 0.0023905 6.5415 0.0025266 386.23684610813086 48.17 0.17679 48.132 48.007 48.184 -0.038643 0.079869 0.0013692 NaN 2.3027 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1053300 + 58804 26873 39297 40179 0.05939612465761002 SLAQERLL 8 Unmodified _SLAQERLL_ 0 0 0 REV__ENSG00000123407|ENST00000243103|HOXC12 REV__ENSG00000123407|ENST00000243103|HOXC12 MSMS AL20221201_MKP_PDAC_01 4 465.2750244140625 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 48.364 1 43.13 42.63 43.63 -5.2339 0 0 0 0.75749 1 30116 30116 25.399 0 1 + 58805 19387 39298 40180 68505 68505 0.06705473788815652 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7745971679688 2 496.7742 991.533846 0.71732 0.00035634 1.2469 0.00061943 1.9642 0.00097578 496.77491631093665 74.163 0.35938 73.687 73.504 73.864 -0.47588 38 14 4 0 0 0 0.06294 2 40554 40554;40656 41.84 14.956 1 4873200 58806 7884;9160 39299 40181 68506;68507 68506 0.037740540689469526 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5454711914062 1 992.541123 991.533846 0.6051 0.00060058 1.5754 0.0015636 2.1805 0.0021642 992.5431741120398 74.214 0.15519 73.738 73.613 73.768 -0.47588 8 5 2 0 0 0 0.34999 1 40600 40600 14.838 4.0143 1 473380 58807 7884;9160 39299 40181 68508 68508 0.037740540689469526 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7742309570312 2 496.7742 991.533846 0.40949 0.00020343 -0.24084 -0.00011965 0.16865 8.3781E-05 496.77403416367594 73.667 0.25475 73.711 73.589 73.843 0.043983 18 11 2 0 0 0 0.039985 1 40613 40613 49.933 15.531 1 1999600 58808 7884;9160 39299 40181 68509 68509 0.037740540689469526 SLAQYLINA 9 Unmodified _SLAQYLINA_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3 ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7750244140625 2 496.7742 991.533846 0.54555 0.00027102 0.31717 0.00015756 0.86272 0.00042858 496.77450263835635 82.293 0.7594 76.118 75.73 76.49 -6.1757 64 42 2 0 0 0 0.024882 4 54030 53892;54030;54155;54287 58.679 17.147 1 11263000 58809 7884;9160 39299 40181 68510;68511;68512;68513 68511 0.037740540689469526 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7895812988281 2 510.78985 1019.56515 0.30167 0.00015409 -0.75509 -0.00038569 -0.45341 -0.0002316 510.7893370116005 85.554 0.43415 85.053 84.864 85.298 -0.5015 115 39 4 0 0 0 0.011968 3 46834 46729;46834;46943 74.929 34.972 1 24925000 58810 9909 39300 40182 68514;68515;68516 68515 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7897338867188 2 510.78985 1019.56515 0.080927 4.1337E-05 0.1174 5.9965E-05 0.19832 0.0001013 510.7899598470762 85.034 0.26103 85.097 84.978 85.239 0.063171 24 10 3 0 0 0 0.018301 1 47064 47064 65.235 27.261 1 34018000 58811 9909 39300 40182 68517 68517 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.79052734375 2 510.78985 1019.56515 0.99289 0.00050716 0.46871 0.00023941 1.4616 0.00074657 510.7900204307305 98.449 0.47996 92.273 91.985 92.465 -6.1757 95 33 4 0 0 0 0.018301 2 65314 65180;65314 65.235 26.373 1 210580000 58812 9909 39300 40182 68518;68519 68519 0.056146271030456774 SLAQYLINV 9 Unmodified _SLAQYLINV_ 0 0 0 nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;ENST00000517662.1_1_8:75515525-75516083:-|nuORF;ENST00000547048.5_1_12:53862529-53873223:+|nuORF nc|ENSG00000197111|Q15366-6|PCBP2 nc|ENSG00000197111|Q15366-6|PCBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.78985 1019.56515 0.30927 0.00015797 -1.784 -0.00091127 -1.4748 -0.0007533 511.2890878586567 85.041 0.06424 85.041 84.985 85.05 0 -0.022324 -0.0013748 NaN 74.929 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 420710 58813 9909 39300 40182 0.056146271030456774 SLAQYYAI 8 Unmodified _SLAQYYAI_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2372436523438 2 464.742368 927.470183 0.92224 0.0004286 1.8651 0.00086677 2.7873 0.0012954 464.7428696514088 49.384 0.51893 49.384 49.152 49.671 0 63 23 4 0 0 0 0.6895 1 27103 27103 18.135 0 1 4926500 + 58814 19763 39301 40183 68520 68520 0.003546936318457483 SLARPLLLL 9 Unmodified _SLARPLLLL_ 0 0 0 REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3342895507812 2 498.334227 994.653902 0.20709 0.0001032 0.4555 0.00022699 0.66259 0.00033019 498.33437676911524 88.472 0.32915 88.525 88.379 88.708 0.053352 28 13 3 0 0 0 0.039985 1 49287 49287 49.933 4.2334 1 30559000 + 58815 26678 39302 40184 68521 68521 0.15636087133384535 SLASAVATVM 10 Unmodified _SLASAVATVM_ 0 0 0 REV__ENSG00000213934|ENST00000330597|HBG1 REV__ENSG00000213934|ENST00000330597|HBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2559814453125 2 475.254785 948.495018 1.0935 0.00051969 -0.29249 -0.00013901 0.801 0.00038068 475.25464186641597 61.659 0.40988 55.484 55.331 55.741 -6.1757 34 21 2 0 0 0 0.39779 1 39784 39784 21.747 0 1 26608000 + 58816 24298 39303 40185 68522 68522 0.018710054429334377 SLASKYHA 8 Unmodified _SLASKYHA_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.7328491210938 2 438.732335 875.450116 1.1872 0.00052085 -0.32844 -0.0001441 0.85873 0.00037675 438.73227083136095 53.564 0.59708 47.76 47.498 48.095 -5.8042 82 38 3 0 0 0 0.38465 1 33911 33911 46.021 6.0636 1 57802000 + 58817 22747 39304 40186 68523 68523 0.007409426919025464 SLASKYHA 8 Unmodified _SLASKYHA_ 0 0 0 REV__ENSG00000173769|ENST00000309765|TOPAZ1 REV__ENSG00000173769|ENST00000309765|TOPAZ1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 438.732335 875.450116 1.1872 0.00052085 -0.32844 -0.0001441 0.85873 0.00037675 438.73227083136095 53.564 0.59708 47.76 47.498 48.095 -5.8042 -0.077325 -3.2797E-05 NaN 46.021 82 38 3 NaN NaN NaN NaN 0 NaN NaN 0 57802000 + 58818 22747 39304 40186 0.007409426919025464 SLASLLVSV 9 Unmodified _SLASLLVSV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 888.5418090820312 1 888.54006 887.532783 2.1139 0.0018783 -0.034408 -3.0573E-05 2.0795 0.0018477 888.539695806136 93.598 0.37142 93.621 93.448 93.819 0.02298 30 14 3 0 0 0 0.012148 1 52096 52096 74.423 10.186 1 9064900 58819 1174 39305 40187 68524 68524 0.08451839700057917 SLASLLVSV 9 Unmodified _SLASLLVSV_ 0 0 0 ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF ENSG00000075914|ENST00000265564|EXOSC7 ENSG00000075914|ENST00000265564|EXOSC7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.7747802734375 2 444.773668 887.532783 1.291 0.0005742 -0.29153 -0.00012966 0.99946 0.00044454 444.7734458818517 100.38 0.1878 94.205 94.103 94.291 -6.1757 27 11 3 0 0 0 0.019303 1 67083 67083 64.236 13.381 1 112730000 58820 1174 39305 40187 68525 68525 0.08451839700057917 SLASLRSGF 9 Unmodified _SLASLRSGF_ 0 0 0 REV__ENSG00000100036|ENST00000343605|SLC35E4 REV__ENSG00000100036|ENST00000343605|SLC35E4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2586364746094 2 469.258717 936.50288 0.80096 0.00037586 -1.1676 -0.00054791 -0.36664 -0.00017205 469.2581270376616 49.791 0.4956 44.252 44.05 44.546 -5.5391 72 31 3 0 0 0 0.14602 1 31331 31331 28.487 6.7402 1 65513000 + 58821 18006 39306 40188 68526 68526 0.0320890075471425 SLASVFVRL 9 Unmodified _SLASVFVRL_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000487617.5_1_2:240002789-240024568:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3002014160156 2 496.300384 990.586216 0.27418 0.00013607 0.14056 6.976E-05 0.41474 0.00020583 496.3002145263145 76.842 0.30656 76.892 76.75 77.057 0.05011 17 12 2 0 0 0 0.07087 1 42429 42429 39.95 12.321 1 1759200 58822 970 39307 40189 68527 68527 0.09054637202575577 SLASVIFLL 9 Unmodified _SLASVIFLL_ 0 0 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 962.592529296875 1 962.592096 961.584819 0.92026 0.00088583 0.66617 0.00064125 1.5864 0.0015271 962.59225845579 102.38 0.091263 96.208 96.158 96.249 -6.1757 15 7 3 0 0 0 0.0090851 1 68703 68703 85.357 10.934 1 11178000 58823 8266 39308 40190 68528 68528 0.10249003113801791 SLASYSLLI 9 Unmodified _SLASYSLLI_ 0 0 0 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.5484008789062 1 966.550625 965.543348 0.57948 0.0005601 -1.6715 -0.0016155 -1.092 -0.0010554 966.548417485481 78.825 0.63439 72.649 72.422 73.056 -6.1757 63 36 2 0 0 0 0.026094 1 51870 51870 57.471 9.1255 1 19051000 58824 4001 39309 40191 68529 68529 0.059198223544854045 SLATPQQG 8 Unmodified _SLATPQQG_ 0 0 0 ENST00000508628.6_1_17:78368792-78368933:+|nuORF ENST00000508628.6_1_17:78368792-78368933:+|nuORF ENST00000508628.6_1_17:78368792-78368933:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.4118041992188 1 801.410108 800.402832 0.86549 0.00069361 0.4937 0.00039566 1.3592 0.0010893 801.4103347028212 45.501 0.33751 40.546 40.392 40.729 -4.9549 34 22 2 0 0 0 0.17994 1 27874 27874 77.984 0 1 12366000 58825 14562 39310 40192 68530 68530 -0.005353365790938369 SLATSHFL 8 Unmodified _SLATSHFL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 437.734619140625 2 438.23471 874.454868 1.1957 0.00052399 2.3978 0.0010508 3.5935 0.0015748 438.23597286312787 32.215 0.28111 28.359 28.284 28.565 -3.8562 24 16 2 0 0 0 8.7369 1 18316 18316 26.341 1.6674 1 14618000 58826 1070 39311 40193 68531 68531 0.012618268346614059 SLATSLPRL 9 Unmodified _SLATSLPRL_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2893371582031 2 479.290017 956.565481 0.31407 0.00015053 1.0639 0.00050991 1.378 0.00066045 479.29042234761977 59.643 0.31624 59.59 59.46 59.776 -0.053059 31 15 3 0 0 0 0.044011 1 32487 32487 47.749 9.5731 1 6052900 58827 1960 39312 40194 68532 68532 0.0854604682289164 SLATSLPRL 9 Unmodified _SLATSLPRL_ 0 0 0 ENSG00000101407|ENST00000373447|TTI1;TTI1|p.L924Wfs*37|1|0.11|ENSG00000101407|chr20:37999211-37999211|G/-|frameshift_variant ENSG00000101407|ENST00000373447|TTI1 ENSG00000101407|ENST00000373447|TTI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2901000976562 2 479.290017 956.565481 0.52283 0.00025059 0.17181 8.2345E-05 0.69463 0.00033293 479.29007559625234 65.33 0.37616 59.154 58.968 59.344 -6.1757 32 20 2 0 0 0 0.013041 1 42369 42369 71.922 20.292 1 10338000 58828 1960 39312 40194 68533 68533 0.0854604682289164 SLATTKFF 8 Unmodified _SLATTKFF_ 0 0 0 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 MSMS AL20221201_MKP_PDAC_01 4 457.7506408691406 2 457.752736 913.490919 NaN NaN NaN NaN NaN NaN NaN 45.396 1 40.441 39.941 40.941 -4.9549 0 0 0 0.4236 1 27857 27857 50.855 1.3007 1 + 58829 21255 39313 40195 68534 68534 0.030712840115256768 SLATTKFF 8 Unmodified _SLATTKFF_ 0 0 0 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5 MSMS AL20221201_MKP_PDAC_01 4 457.750732421875 2 457.752736 913.490919 NaN NaN NaN NaN NaN NaN NaN 45.687 1 40.732 40.232 41.232 -4.9549 0 0 0 0.47897 1 28092 28092 42.095 9.3089 1 + 58830 21255 39313 40195 68535 68535 0.030712840115256768 SLAVLGGKLYV 11 Unmodified _SLAVLGGKLYV_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3438720703125 2 560.342249 1118.66995 1.302 0.00072954 0.22493 0.00012604 1.5269 0.00085558 560.3423534436746 71.431 0.256 71.47 71.323 71.579 0.039032 19 11 2 0 0 0 0.178 1 39328 39328 33.445 14.188 1 1446800 58831 6856 39314 40196 68536 68536 0.11535748579603933 SLAVTIQTV 9 Unmodified _SLAVTIQTV_ 0 0 0 REV__ENSG00000164180|ENST00000296595|TMEM161B REV__ENSG00000164180|ENST00000296595|TMEM161B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2779541015625 2 466.276575 930.538597 -0.32088 -0.00014962 0.65179 0.00030391 0.33091 0.00015429 466.2769769146066 78.46 0.36848 77.974 77.82 78.189 -0.48596 52 16 4 0 0 0 0.039985 1 42930 42930 49.933 0 1 10325000 + 58832 21887 39315 40197 68537 68537 0.07054938211729223 SLAWANTY 8 Unmodified _SLAWANTY_ 0 0 0 REV__ENSG00000198786|ENST00000361567|MT-ND5 REV__ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.446533203125 1 925.441409 924.434132 0.67775 0.00062722 -0.25618 -0.00023708 0.42157 0.00039014 925.4410965360564 56.527 0.65657 50.55 50.266 50.923 -5.9769 121 37 4 0 0 0 0.71527 1 35920 35920 15.847 1.0089 1 631110000 + 58833 24057 39316 40198 68538 68538 -0.031107635450098314 SLAWDVPAA 9 Unmodified _SLAWDVPAA_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.47412109375 1 929.472709 928.465432 0.27132 0.00025219 3.4744 0.0032294 3.7458 0.0034816 929.4764385375738 65.369 0.35931 65.369 65.143 65.503 0 20 13 2 0 0 0 0.087258 1 36484 36484 36.044 3.7387 1 918670 58834 7904 39317 40199 68539 68539 -0.0016619051091311121 SLAWDVPAA 9 Unmodified _SLAWDVPAA_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS AL20221201_MKP_PDAC_01 4 465.2409973144531 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 72.008 1 65.833 65.333 66.333 -6.1757 0 0 0 0.096036 1 47113 47113 44.407 4.4497 1 58835 7904 39317 40199 68540 68540 -0.0016619051091311121 SLAWGSWT 8 Unmodified _SLAWGSWT_ 0 0 0 ENSG00000163501|ENST00000295731|IHH ENSG00000163501|ENST00000295731|IHH ENSG00000163501|ENST00000295731|IHH MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.720947265625 2 454.21906 906.423567 0.8185 0.00037178 0.31557 0.00014334 1.1341 0.00051512 454.21911811205985 56.584 0.36047 50.607 50.375 50.736 -5.9769 34 20 2 0 0 0 0.70294 1 36058 36058 16.942 2.104 1 34619000 58836 7004 39318 40200 68541 68541 -0.033387461994152545 SLAYYCHPP 9 Unmodified _SLAYYCHPP_ 0 0 0 nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2691650390625 2 525.739302 1049.46405 0.40288 0.00021181 -0.25097 -0.00013194 0.15191 7.9866E-05 525.7388015972016 64.542 0.94465 64.542 63.974 64.919 0 82 34 4 0 0 0 0.19613 1 35926 35926 7.9102 0 1 6365100 58837 7100 39319 40201 68542 68542 -0.05870147871314657 SLCCHACA 8 Unmodified _SLCCHACA_ 0 0 0 REV__ENST00000263116.6_1_22:23504435-23504693:+|nuORF REV__ENST00000263116.6_1_22:23504435-23504693:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.5067749023438 2 404.150951 806.28735 NaN NaN NaN NaN NaN NaN NaN 14.601 1 14.57 14.07 15.07 -0.030868 0 0 0 0.97444 1 7114 7114 0.79363 0 1 + 58838 25041 39320 40202 68543 68543 -0.12354223297620592 SLCHVLPDL 9 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))HVLPDL_ SLC(1)HVLPDL SLC(85)HVLPDL 0 1 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF;ENST00000595974.5_1_19:59060841-59061245:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2733764648438 2 527.273509 1052.53247 0.73586 0.000388 -0.12413 -6.5451E-05 0.61173 0.00032255 527.2734558452773 68.24 0.8647 62.065 61.673 62.537 -6.1757 91 51 2 0 0 0 0.0090948 4 44671 44396;44533;44671;44806 85.272 47.121 1 152900000 58839 4249 39321 40203 68544;68545;68546;68547 68546 426 0.008300967085460798 SLCHVLPDL 9 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))HVLPDL_ SLC(1)HVLPDL SLC(71)HVLPDL 0 1 0 nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28;ENST00000598355.1_1_19:59061017-59061917:+|nuORF;ENST00000595974.5_1_19:59060841-59061245:+|nuORF nc|ENSG00000130726|Q13263-2|TRIM28 nc|ENSG00000130726|Q13263-2|TRIM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2755126953125 2 527.273509 1052.53247 1.0448 0.00055088 1.7841 0.00094069 2.8288 0.0014916 527.2744347718294 70.552 0.93536 64.376 64.007 64.943 -6.1757 85 49 3 0 0 0 0.013323 2 46154 46154;46275 71.134 40.909 1 46114000 58840 4249 39321 40203 68548;68549 68548 426 0.008300967085460798 SLCLWPWRRWL 11 Unmodified _SLCLWPWRRWL_ 0 0 0 REV__ENST00000520105.5_1_8:142441191-142441554:+|nuORF REV__ENST00000520105.5_1_8:142441191-142441554:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.940673828125 3 505.939575 1514.79689 NaN NaN NaN NaN NaN NaN NaN 77.855 1 71.679 71.179 72.179 -6.1757 0 0 0 0.93224 1 50939 50939 2.6312 1.1761 1 + 58841 28272 39322 40204 68550 68550 0.0600877125293664 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8472900390625 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 6.4839 1 4.0019 3.5019 4.5019 -2.482 0 0 0 0.97444 1 3278 3278 0.45834 0.057624 1 58842 12398 39323 40205 68551 68551 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8465881347656 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 9.0546 1 6.5726 6.0726 7.0726 -2.482 0 0 0 0.97444 1 4566 4566 0.45834 0.057624 1 58843 12398 39323 40205 68552 68552 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8462524414062 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 9.3336 1 6.8517 6.3517 7.3517 -2.482 0 0 0 0.97444 1 4709 4709 0.45834 0.057624 1 58844 12398 39323 40205 68553 68553 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8462524414062 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 10.532 1 8.0505 7.5505 8.5505 -2.482 0 0 0 0.97444 1 5310 5310 0.45834 0.18932 1 58845 12398 39323 40205 68554 68554 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8472900390625 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 10.759 1 8.2773 7.7773 8.7773 -2.482 0 0 0 0.97444 1 5421 5421 0.45834 0.057624 1 58846 12398 39323 40205 68555 68555 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.9732971191406 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 10.842 1 8.3598 7.8598 8.8598 -2.482 0 0 0 0.97444 1 5462 5462 0.45834 0.057624 1 58847 12398 39323 40205 68556 68556 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.1759033203125 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 11.235 1 8.7535 8.2535 9.2535 -2.482 0 0 0 0.97444 1 5654 5654 0.45834 0.057624 1 58848 12398 39323 40205 68557 68557 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8467712402344 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 11.41 1 8.9277 8.4277 9.4277 -2.482 0 0 0 0.97444 1 5745 5745 0.45834 0.057624 1 58849 12398 39323 40205 68558 68558 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8460083007812 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 11.661 1 9.1791 8.6791 9.6791 -2.482 0 0 0 0.97444 1 5870 5870 0.45834 0.057624 1 58850 12398 39323 40205 68559 68559 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8465576171875 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 12.425 1 9.9434 9.4434 10.443 -2.482 0 0 0 0.97444 1 6283 6283 0.45834 0.057624 1 58851 12398 39323 40205 68560 68560 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8458251953125 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 12.633 1 10.151 9.6506 10.651 -2.482 0 0 0 0.97444 1 6395 6395 0.45834 0.057624 1 58852 12398 39323 40205 68561 68561 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8466491699219 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 13.037 1 10.555 10.055 11.055 -2.482 0 0 0 0.97444 1 6604 6604 0.45834 0.057624 1 58853 12398 39323 40205 68562 68562 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8472290039062 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 13.277 1 10.795 10.295 11.295 -2.482 0 0 0 0.97444 1 6728 6728 0.45834 0.057624 1 58854 12398 39323 40205 68563 68563 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8461608886719 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 13.476 1 10.994 10.494 11.494 -2.482 0 0 0 0.97444 1 6831 6831 0.45834 0.057624 1 58855 12398 39323 40205 68564 68564 -0.008797791066172067 SLCLWVFW 8 Unmodified _SLCLWVFW_ 0 0 0 ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF ENST00000373109.6_1_10:73820069-73820282:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8459777832031 3 351.84573 1052.51536 NaN NaN NaN NaN NaN NaN NaN 13.7 1 11.197 10.697 11.697 -2.5029 0 0 0 0.97444 1 6942 6942 0.45834 0.057624 1 58856 12398 39323 40205 68565 68565 -0.008797791066172067 SLCPDLMEI 9 Carbamidomethyl (C) _SLC(Carbamidomethyl (C))PDLMEI_ SLC(1)PDLMEI SLC(64)PDLMEI 0 1 0 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2522583007812 2 539.251385 1076.48822 1.0508 0.00056664 -0.57549 -0.00031034 0.4753 0.00025631 539.2511878273832 86.27 0.50795 80.094 79.85 80.358 -6.1757 58 27 3 0 0 0 0.019303 2 56824 56824;56950 64.236 24.279 1 32836000 58857 4276 39324 40206 68566;68567 68566 431 -0.04696675499940284 SLCRFFGI 8 Unmodified _SLCRFFGI_ 0 0 0 ENST00000549253.5_1_18:3449645-3457414:+|nuORF;ENST00000345133.9_1_18:3451757-3457414:+|nuORF ENST00000549253.5_1_18:3449645-3457414:+|nuORF ENST00000549253.5_1_18:3449645-3457414:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2236633300781 2 471.746931 941.479308 -0.2829 -0.00013346 2.4583 0.0011597 2.1754 0.0010263 471.74814810524674 41.13 0.19566 41.13 41.045 41.241 0 18 9 2 0 0 0 8.7369 1 22205 22205 13.508 4.1248 1 2255100 58858 12025 39325 40207 68568 68568 0.006227637165352462 SLCSSNRFS 9 Unmodified _SLCSSNRFS_ 0 0 0 REV__ENSG00000174652|ENST00000592904|ZNF266 REV__ENSG00000174652|ENST00000592904|ZNF266 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2662658691406 2 500.729466 999.444379 0.45408 0.00022737 2.0121 0.0010075 2.4662 0.0012349 500.73054818372793 62.406 0.22945 61.919 61.768 61.997 -0.48764 19 10 2 0 0 0 0.19891 1 34002 34002 11.64 3.047 1 2498000 + 58859 22806 39326 40208 68569 68569 -0.05536523882074107 SLDAALSSL 9 Unmodified _SLDAALSSL_ 0 0 0 REV__ENST00000428046.7_1_15:43622876-43623026:+|nuORF REV__ENST00000428046.7_1_15:43622876-43623026:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 876.4671020507812 1 876.467289 875.460012 -0.046332 -4.0608E-05 -0.89715 -0.00078632 -0.94348 -0.00082693 876.4668031965754 51.833 0.24303 51.833 51.665 51.908 0 15 10 2 0 0 0 0.026094 1 28642 28642 57.471 2.6978 1 1727000 + 58860 26930 39327 40209 68570 68570 0.01730085906626755 SLDAFSEFHLT 11 Unmodified _SLDAFSEFHLT_ 0 0 0 nc|ENSG00000134121|O00533|CHL1;ENSG00000134121|ENST00000256509|CHL1 nc|ENSG00000134121|O00533|CHL1 nc|ENSG00000134121|O00533|CHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.8035278320312 2 633.803685 1265.59282 -0.080153 -5.0801E-05 0.68916 0.00043679 0.60901 0.00038599 633.8041868845515 55.071 0.29734 55.071 54.944 55.241 0 31 12 4 0 0 0 0.37677 1 30568 30568 22.736 5.6234 1 3797700 58861 4560 39328 40210 68571 68571 -0.029355144273722544 SLDAFSEFHLT 11 Unmodified _SLDAFSEFHLT_ 0 0 0 nc|ENSG00000134121|O00533|CHL1;ENSG00000134121|ENST00000256509|CHL1 nc|ENSG00000134121|O00533|CHL1 nc|ENSG00000134121|O00533|CHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8035278320312 2 633.803685 1265.59282 -0.23336 -0.0001479 0.36278 0.00022993 0.12942 8.2029E-05 633.8037665606046 55.783 0.43252 55.306 55.026 55.459 -0.47798 57 20 4 0 0 0 0.25654 1 30284 30284 29.082 1.4528 1 31343000 58862 4560 39328 40210 68572 68572 -0.029355144273722544 SLDAKGQQFAD 11 Unmodified _SLDAKGQQFAD_ 0 0 0 REV__ENSG00000170542|ENST00000380698|SERPINB9 REV__ENSG00000170542|ENST00000380698|SERPINB9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2857666015625 2 590.28566 1178.55677 NaN NaN NaN NaN NaN NaN NaN 56.003 1 55.525 55.025 56.025 -0.47798 0 0 0 0.48869 1 30397 30397 24.991 5.629 1 + 58863 22491 39329 40211 68573 68573 -0.025369716042405344 SLDDHVVAV 9 Unmodified _SLDDHVVAV_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000464249.1_1_6:170068797-170070787:-|nuORF;ENST00000546953.1_1_6:170070523-170070838:-|nuORF;ENST00000496752.1_1_6:170065563-170070787:-|nuORF nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7497863769531 2 477.748182 953.481811 -0.34103 -0.00016293 -0.40356 -0.0001928 -0.74459 -0.00035573 477.7479728316545 41.301 0.28491 41.301 41.1 41.385 0 23 13 2 0 0 0 0.16226 1 22312 22312 26.884 9.9414 1 5729700 58864 9261 39330 40212 68574 68574 0.0032089065518903226 SLDDHVVAV 9 Unmodified _SLDDHVVAV_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000464249.1_1_6:170068797-170070787:-|nuORF;ENST00000546953.1_1_6:170070523-170070838:-|nuORF;ENST00000496752.1_1_6:170065563-170070787:-|nuORF nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7489929199219 2 477.748182 953.481811 1.6917 0.00080821 -0.69737 -0.00033317 0.99432 0.00047504 477.74790947556795 47.604 0.35352 42.37 42.197 42.55 -5.2339 35 20 2 0 0 0 0.042911 2 29646 29510;29646 48.346 12.302 1 16690000 58865 9261 39330 40212 68575;68576 68576 0.0032089065518903226 SLDDIISIF 9 Unmodified _SLDDIISIF_ 0 0 0 REV__nc|ENSG00000091181|Q01344-3|IL5RA REV__nc|ENSG00000091181|Q01344-3|IL5RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7714538574219 2 511.773865 1021.53318 0.28196 0.0001443 0.11417 5.8427E-05 0.39613 0.00020273 511.77375389245395 77.6 0.23349 77.6 77.561 77.794 0 21 11 2 0 0 0 0.2001 1 43156 43156 23.148 0 1 4208200 + 58866 17887 39331 40213 68577 68577 0.023272146292470097 SLDDLLTNV 9 Unmodified _SLDDLLTNV_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2619934082031 2 495.261122 988.507691 0.19022 9.4209E-05 1.0343 0.00051223 1.2245 0.00060644 495.26166354442665 77.995 0.36421 77.995 77.833 78.197 0 36 15 3 0 0 0 0.06187 2 43419 43313;43419 42.095 13.608 1 3194700 58867 5557 39332 40214 68578;68579 68579 0.012977401068042127 SLDDLLTNV 9 Unmodified _SLDDLLTNV_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20221201_MKP_PDAC_01 4 495.261474609375 2 495.261122 988.507691 NaN NaN NaN NaN NaN NaN NaN 87.193 1 81.017 80.517 81.517 -6.1757 0 0 0 0.080768 1 57489 57489 48.346 6.2513 1 58868 5557 39332 40214 68580 68580 0.012977401068042127 SLDEGIEQV 9 Unmodified _SLDEGIEQV_ 0 0 0 ENST00000464685.1_1_2:99785961-99787892:-|nuORF;ENST00000487588.5_1_2:99777987-99787865:-|nuORF;ENSG00000158411|ENST00000289359|MITD1 ENST00000464685.1_1_2:99785961-99787892:-|nuORF ENST00000464685.1_1_2:99785961-99787892:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.242431640625 2 495.242929 988.471305 NaN NaN NaN NaN NaN NaN NaN 45.09 1 45.09 44.59 45.59 0 0 0 0 0.029091 1 24560 24560 67.344 25.249 1 58869 6582 39333 40215 68581 68581 -0.023391367898966564 SLDFWQRY 8 Unmodified _SLDFWQRY_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.76953125 2 557.769448 1113.52434 0.42183 0.00023528 -0.9095 -0.00050729 -0.48768 -0.00027201 557.7688446477342 81.809 0.57378 81.809 81.593 82.167 0 111 32 5 0 0 0 0.72953 1 45312 45312 14.582 2.0501 1 38792000 58870 436 39334 40216 68582 68582 -0.027877142165834812 SLDGAPIGV 9 Unmodified _SLDGAPIGV_ 0 0 0 nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 nc|ENSG00000079819|O43491-2|EPB41L2 nc|ENSG00000079819|O43491-2|EPB41L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.4487915039062 1 828.44616 827.438883 0.28827 0.00023881 -0.69028 -0.00057186 -0.40201 -0.00033305 828.4454585694348 53.66 0.2641 53.66 53.506 53.77 0 20 12 2 0 0 0 0.013472 1 29719 29719 70.716 26.309 1 2960900 58871 1286 39335 40217 68583 68583 0.018261205977637474 SLDGFTIQV 9 Unmodified _SLDGFTIQV_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2588500976562 2 490.258382 978.502212 0.12256 6.0084E-05 1.0066 0.00049351 1.1292 0.00055359 490.2588212828161 78.658 0.35955 78.172 77.99 78.349 -0.48596 32 13 3 0 0 0 0.06187 1 43034 43034 42.095 6.0504 1 3795000 58872 2782 39336 40218 68584 68584 0.012100613149982564 SLDGFTIQV 9 Unmodified _SLDGFTIQV_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2591857910156 2 490.258382 978.502212 1.0912 0.00053499 0.46604 0.00022848 1.5573 0.00076347 490.25845222897357 86.15 0.75079 79.975 79.479 80.23 -6.1757 82 41 3 0 0 0 0.031062 2 56834 56707;56834 54.774 20.671 1 41758000 58873 2782 39336 40218 68585;68586 68586 0.012100613149982564 SLDGFTIQV 9 Unmodified _SLDGFTIQV_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728-3|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.5106811523438 1 979.509488 978.502212 1.0006 0.00098012 2.2627 0.0022163 3.2633 0.0031964 979.5116772182563 86.163 0.46166 79.987 79.694 80.155 -6.1757 38 25 2 0 0 0 0.008678 2 56844 56717;56844 88.904 20.823 1 15269000 58874 2782 39336 40218 68587;68588 68588 0.012100613149982564 SLDGGFVYI 9 Unmodified _SLDGGFVYI_ 0 0 0 nc|ENSG00000091513|P02787|TF;ENSG00000091513|ENST00000402696|TF nc|ENSG00000091513|P02787|TF nc|ENSG00000091513|P02787|TF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2496337890625 2 485.74765 969.480748 0.62287 0.00030256 -0.22166 -0.00010767 0.40121 0.00019489 485.74751394605113 62.141 0.41294 55.966 55.89 56.302 -6.1757 28 23 2 0 0 0 0.06187 1 40117 40117 42.095 3.9434 1 28896000 58875 1588 39337 40219 68589 68589 -0.00521323713712718 SLDGGYLYI 9 Unmodified _SLDGGYLYI_ 0 0 0 CON__Q29443;CON__Q0IIK2 CON__Q29443 CON__Q29443 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7519226074219 2 500.752933 999.491313 0.28148 0.00014095 -1.4141 -0.00070813 -1.1327 -0.00056718 500.7523311147464 65.384 0.45432 65.384 65.169 65.624 0 30 17 3 0 0 0 0.39863 1 36424 36424 12.532 0 1 2259300 + 58876 181 39338 40220 68590 68590 -0.008453410593006083 SLDGIIVLAA 10 Unmodified _SLDGIIVLAA_ 0 0 0 ENSG00000171180|ENST00000641868|OR2M4 ENSG00000171180|ENST00000641868|OR2M4 ENSG00000171180|ENST00000641868|OR2M4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2248229980469 2 486.292225 970.569897 0.57546 0.00027984 0.8008 0.00038942 1.3763 0.00066926 486.292144674245 52.943 0.28162 52.88 52.742 53.024 -0.063423 32 13 3 0 0 0 0.18632 1 28704 28704 32.305 17.467 1 4254500 58877 8074 39339 40221 68591 68591 0.08343511245789159 SLDGQNIYNAC 11 Unmodified _SLDGQNIYNAC_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;ENST00000592804.1_1_19:804936-805922:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8466491699219 3 399.845005 1196.51319 1.4569 0.00058254 1.8468 0.00073842 3.3037 0.001321 399.8457761167153 34.06 0.3432 30.074 29.824 30.167 -3.9853 31 18 2 0 0 0 0.6747 1 19617 19617 5.5233 2.8921 1 7611400 58878 443 39340 40222 68592 68592 -0.07720904373013582 SLDHEVVII 9 Unmodified _SLDHEVVII_ 0 0 0 REV__ENSG00000164163|ENST00000296577|ABCE1 REV__ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7870483398438 2 512.787307 1023.56006 0.34833 0.00017862 -0.033533 -1.7195E-05 0.3148 0.00016143 512.7871208912476 88.054 0.28609 87.55 87.439 87.725 -0.50423 20 11 2 0 0 0 0.39863 1 48205 48205 12.532 0 1 438160 + 58879 21881 39341 40223 68593 68593 0.049223232404415285 SLDHKRPLI 9 Unmodified _SLDHKRPLI_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.2957763671875 2 539.822015 1077.62948 1.3239 0.00071465 3.9073 0.0021093 5.2312 0.0028239 539.8248925170517 97.529 0.181 91.354 91.203 91.384 -6.1757 15 9 2 0 0 0 0.16229 1 64582 64582 18.135 3.5533 1 39316000 58880 8296;16388 39342 40224 68594 68594 0.09376826979860198 SLDHPHCLSY 10 Unmodified _SLDHPHCLSY_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2647705078125 2 586.263673 1170.51279 0.46871 0.00027479 -0.64094 -0.00037576 -0.17223 -0.00010097 586.2633883834042 44.07 0.3933 39.305 39.05 39.443 -4.7648 45 25 2 0 0 0 0.18021 1 26891 26891 36.127 1.195 1 34041000 58881 986 39343 40225 68595 68595 -0.06564279302210707 SLDKNPDEY 9 Unmodified _SLDKNPDEY_ 0 0 0 REV__ENST00000511724.1_1_5:102509577-102524329:+|nuORF REV__ENST00000511724.1_1_5:102509577-102524329:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.790283203125 2 540.745836 1079.47712 0.66884 0.00036167 -0.75591 -0.00040876 -0.087072 -4.7084E-05 540.7450371701015 50.195 0.3039 49.803 49.607 49.911 -0.3923 35 14 3 0 0 0 0.18118 1 27015 27015 19.257 3.4888 1 3097800 + 58882 20788 39344 40226 68596 68596 -0.05944038278221342 SLDLMVSLL 9 Unmodified _SLDLMVSLL_ 0 0 0 ENST00000356692.9_1_3:73096488-73108222:+|nuORF ENST00000356692.9_1_3:73096488-73108222:+|nuORF ENST00000356692.9_1_3:73096488-73108222:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7801208496094 2 495.780636 989.546719 1.1078 0.0005492 1.4789 0.00073322 2.5867 0.0012824 495.77932737365575 87.094 0.70622 80.918 80.699 81.405 -6.1757 66 38 3 0 0 0 0.41742 1 57403 57403 11.64 1.4569 1 16970000 58883 12097 39345 40227 68597 68597 0.05152749136846069 SLDMYLETKRH 11 Unmodified _SLDMYLETKRH_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;ENST00000574518.1_1_17:7674005-7689702:+|nuORF ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 697.30810546875 2 696.850644 1391.68673 -0.74439 -0.00051873 -0.95441 -0.00066508 -1.6988 -0.0011838 696.8503000297522 34.184 0.091042 34.184 34.156 34.247 0 6 4 2 0 0 0 0.29564 1 17991 17991 5.7319 0 1 2352200 58884 9210 39346 40228 68598 68598 0.006558814032359805 SLDNDNYVF 9 Unmodified _SLDNDNYVF_ 0 0 0 nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1 nc|ENSG00000153956|P54289-4|CACNA2D1 nc|ENSG00000153956|P54289-4|CACNA2D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7425537109375 2 543.740554 1085.46655 0.13497 7.3389E-05 0.23643 0.00012855 0.3714 0.00020194 543.7406357103729 64.938 0.45017 64.938 64.719 65.169 0 44 20 4 0 0 0 0.48152 1 36163 36163 8.5933 0 1 8139000 58885 6285 39347 40229 68599 68599 -0.07276020932658867 SLDPALWAF 9 Unmodified _SLDPALWAF_ 0 0 0 ENST00000367506.9_1_1:185125904-185126051:-|nuORF ENST00000367506.9_1_1:185125904-185126051:-|nuORF ENST00000367506.9_1_1:185125904-185126051:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2614440917969 2 510.263468 1018.51238 -0.39253 -0.00020029 -2.9326 -0.0014964 -3.3252 -0.0016967 510.26228952014867 34.247 0.22816 34.247 34.156 34.384 0 19 11 2 0 0 0 0.2143 1 18100 18100 21.747 4.8044 1 1819500 58886 12236 39348 40230 68600 68600 0.003866690402333006 SLDPEMHR 8 Unmodified _SLDPEMHR_ 0 0 0 REV__ENSG00000130159|ENST00000270517|ECSIT REV__ENSG00000130159|ENST00000270517|ECSIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7324829101562 2 492.732009 983.449465 -0.045754 -2.2544E-05 2.8142 0.0013866 2.7685 0.0013641 492.73328848660935 78.456 0.30244 77.97 77.911 78.213 -0.48596 19 13 2 0 0 0 0.78849 1 42973 42973 9.3474 0.75416 1 1524800 + 58887 19699 39349 40231 68601 68601 -0.04292220019453907 SLDPQFLEF 9 Unmodified _SLDPQFLEF_ 0 0 0 ENST00000465123.1_1_15:43868526-43869117:-|nuORF ENST00000465123.1_1_15:43868526-43869117:-|nuORF ENST00000465123.1_1_15:43868526-43869117:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7731323242188 2 548.27149 1094.52843 0.31401 0.00017216 0.23575 0.00012925 0.54976 0.00030142 548.2715517337045 93.538 0.35012 93.538 93.344 93.695 0 47 18 3 0 0 0 0.55144 1 51637 51637 4.3292 0 1 2073700 58888 13730 39350 40232 68602 68602 -0.015056695135172049 SLDQYVQI 8 Unmodified _SLDQYVQI_ 0 0 0 ENSG00000134594|ENST00000257017|RAB33A ENSG00000134594|ENST00000257017|RAB33A ENSG00000134594|ENST00000257017|RAB33A MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7492980957031 2 483.250557 964.486562 0.73804 0.00035666 -1.92 -0.00092783 -1.1819 -0.00057117 483.2504013051873 55.741 0.72057 49.82 49.474 50.195 -5.9211 82 42 3 0 0 0 0.72953 1 35484 35484 14.582 0 1 127190000 58889 4624 39351 40233 68603 68603 0.002897747979545784 SLDREEKPF 9 Unmodified _SLDREEKPF_ 0 0 0 ENSG00000154162|ENST00000382254|CDH12;nc|ENSG00000154162|P55289-2|CDH12 ENSG00000154162|ENST00000382254|CDH12 ENSG00000154162|ENST00000382254|CDH12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.3084716796875 2 560.785296 1119.55604 1.3213 0.00074098 -0.16834 -9.44E-05 1.153 0.00064658 560.7859347174152 81.31 0.41588 75.134 74.98 75.395 -6.1757 29 23 2 0 0 0 0.069627 1 53362 53362 37.974 0 1 15328000 58890 6301 39352 40234 68604 68604 0.0010423374671972852 SLDSTIPGI 9 Unmodified _SLDSTIPGI_ 0 0 0 ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH ENSG00000147649|ENST00000336273|MTDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.482666015625 1 902.482939 901.475663 0.038387 3.4644E-05 0.44657 0.00040302 0.48496 0.00043767 902.4832538958643 64.036 0.2204 64.036 63.906 64.126 0 11 8 2 0 0 0 0.2001 1 35684 35684 23.148 0 1 748140 58891 5871 39353 40235 68605 68605 0.020983724236884882 SLDTFVAQL 9 Unmodified _SLDTFVAQL_ 0 0 0 REV__ENSG00000147459|ENST00000276440|DOCK5 REV__ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2669067382812 2 497.266207 992.517862 0.46481 0.00023113 0.58901 0.0002929 1.0538 0.00052403 497.26646256922413 76.635 0.54011 70.46 70.219 70.759 -6.1757 68 28 3 0 0 0 0.016184 1 50033 50033 67.344 0 1 76753000 + 58892 20890 39354 40236 68606 68606 0.02130347832053303 SLDTLLEAV 9 Unmodified _SLDTLLEAV_ 0 0 0 nc|ENSG00000137834|O43541-4|SMAD6;ENSG00000137834|ENST00000288840|SMAD6 nc|ENSG00000137834|O43541-4|SMAD6 nc|ENSG00000137834|O43541-4|SMAD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5247802734375 1 960.524804 959.517527 0.34611 0.00033245 0.019138 1.8382E-05 0.36525 0.00035083 960.5246832462918 73.999 0.26505 73.999 73.901 74.166 0 21 12 2 0 0 0 0.095405 1 41178 41178 34.102 5.6156 1 1041200 58893 4979 39355 40237 68607 68607 0.03614928112187954 SLDTLLEAV 9 Unmodified _SLDTLLEAV_ 0 0 0 nc|ENSG00000137834|O43541-4|SMAD6;ENSG00000137834|ENST00000288840|SMAD6 nc|ENSG00000137834|O43541-4|SMAD6 nc|ENSG00000137834|O43541-4|SMAD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7670288085938 2 480.76604 959.517527 0.57419 0.00027605 0.59026 0.00028378 1.1644 0.00055982 480.76626401449204 74.042 0.3771 74.042 73.856 74.233 0 30 17 2 0 0 0 0.038285 1 41181 41181 50.855 14.811 1 2374200 58894 4979 39355 40237 68608 68608 0.03614928112187954 SLDVLPTLL 9 Unmodified _SLDVLPTLL_ 0 0 0 nc|ENSG00000116703|P20941-3|PDC;nc|ENSG00000116703|P20941-2|PDC;ENSG00000116703|ENST00000391997|PDC nc|ENSG00000116703|P20941-3|PDC nc|ENSG00000116703|P20941-3|PDC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.8135681152344 2 485.794601 969.574648 0.51657 0.00025095 -0.9203 -0.00044707 -0.40373 -0.00019613 485.794376736288 99.642 0.20806 93.466 93.365 93.574 -6.1757 22 12 2 0 0 0 0.11012 1 66344 66344 21.747 0 1 18758000 58895 16142 39356 40238 68609 68609 0.08864395388582125 SLDWFHQV 8 Unmodified _SLDWFHQV_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;nc|ENSG00000185842|Q0VDD8|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7559204101562 2 516.250892 1030.48723 -0.41137 -0.00021237 -0.5686 -0.00029354 -0.97997 -0.00050591 516.7534882514507 34.446 0.158 34.446 34.402 34.56 0 12 7 2 0 0 0 0.79669 1 18193 18193 8.5933 0 1 1729200 58896 9420 39357 40239 68610 68610 -0.026793857623488293 SLEALTLQ 8 Unmodified _SLEALTLQ_ 0 0 0 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 REV__nc|ENSG00000226807|Q6ZUA9|MROH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.486083984375 1 874.488024 873.480748 -0.40944 -0.00035805 0.41631 0.00036406 0.0068744 6.0116E-06 874.4883124416706 55.983 0.26955 55.983 55.892 56.162 0 23 13 2 0 0 0 0.74163 1 31223 31223 13.508 0 1 7630200 + 58897 29953 39358 40240 68611 68611 0.03894676286279264 SLEAMKSHCL 10 Unmodified _SLEAMKSHCL_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8487243652344 3 373.515943 1117.526 0.25382 9.4806E-05 -1.9106 -0.00071366 -1.6568 -0.00061885 373.84929095200744 58.38 0.27123 57.889 57.778 58.049 -0.49079 16 12 3 0 0 0 0.69064 1 31767 31767 1.9064 0.1641 1 1507000 58898 3804 39359 40241 68612 68612 -0.028061645144816794 SLEAMKSHCL 10 Unmodified _SLEAMKSHCL_ 0 0 0 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 ENSG00000124596|ENST00000424266|OARD1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 373.515943 1117.526 1.9829 0.00074065 -1.7136 -0.00064004 0.26936 0.00010061 373.51536580185837 64.153 0.32498 57.977 57.765 58.09 -6.1757 0.043993 6.0803E-05 NaN 1.9064 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 6551700 58899 3804 39359 40241 -0.028061645144816794 SLECDMESII 10 Unmodified _SLECDMESII_ 0 0 0 nc|ENSG00000118689|O43524-2|FOXO3;ENSG00000118689|ENST00000406360|FOXO3 nc|ENSG00000118689|O43524-2|FOXO3 nc|ENSG00000118689|O43524-2|FOXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5026550292969 3 380.50348 1138.48861 -0.29566 -0.0001125 -0.55377 -0.00021071 -0.84943 -0.00032321 380.5030993530777 35.418 0.28911 35.418 35.265 35.554 0 29 14 3 0 0 0 0.69064 1 18758 18758 1.9064 0 1 11163000 58900 3387 39360 40242 68613 68613 -0.07509300570745836 SLECLCNLLL 10 Unmodified _SLECLCNLLL_ 0 0 0 REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L REV__nc|ENSG00000160284|Q9H0A9-2|SPATC1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7688598632812 2 560.790678 1119.5668 NaN NaN NaN NaN NaN NaN NaN 70.655 1 70.177 69.677 70.677 -0.47735 0 0 0 0.85122 1 38657 38657 10.074 2.1638 1 + 58901 21529 39361 40243 68614 68614 0.011801768051327599 SLEDHSSQGTL 11 Unmodified _SLEDHSSQGTL_ 0 0 0 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 ENSG00000137310|ENST00000376257|TCF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.27099609375 2 587.272749 1172.53095 0.18765 0.0001102 -1.863 -0.0010941 -1.6753 -0.00098388 587.2717630292168 37.157 0.21992 37.157 37.018 37.238 0 25 10 3 0 0 0 0.65846 1 19728 19728 8.1555 0.24537 1 2208500 58902 4922 39362 40244 68615 68615 -0.0484186584649251 SLEEALKAL 9 Unmodified _SLEEALKAL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2815551757812 2 487.281857 972.549162 0.023429 1.1417E-05 -0.62072 -0.00030247 -0.59729 -0.00029105 487.28146545994366 51.833 0.78024 51.833 51.622 52.402 0 90 34 5 0 0 0 0.031062 1 28708 28708 54.774 2.5052 1 659070000 58903 3468 39363 40245 68616 68616 0.06178920866148019 SLEEALKAL 9 Unmodified _SLEEALKAL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000495312.1_1_2:27255799-27258254:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2821655273438 2 487.281857 972.549162 0.351 0.00017104 0.60703 0.0002958 0.95803 0.00046683 487.28212768467864 58.16 0.82673 52.133 51.819 52.645 -6.0275 129 45 4 0 0 0 0.047196 1 37329 37329 46.021 0.32134 1 642070000 58904 3468 39363 40245 68617 68617 0.06178920866148019 SLEEEEGEAG 10 Unmodified _SLEEEEGEAG_ 0 0 0 nc|ENSG00000176406|Q9UQ26-7|RIMS2 nc|ENSG00000176406|Q9UQ26-7|RIMS2 nc|ENSG00000176406|Q9UQ26-7|RIMS2 MSMS AL20221201_MKP_PDAC_01 4 525.0028686523438 2 525.217108 1048.41966 NaN NaN NaN NaN NaN NaN NaN 106.94 1 100.76 100.26 101.26 -6.1757 0 0 0 0.97592 1 71557 71557 3.2813 0 1 58905 16399 39364 40246 68618 68618 -0.10260925274451438 SLEGIPLAQV 10 Unmodified _SLEGIPLAQV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6;ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6;ENSG00000138641|ENST00000402738|HERC3;nc|ENSG00000287542|Q15034-2|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138641|ENST00000402738|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7963256835938 2 513.795132 1025.57571 0.29595 0.00015206 1.4839 0.0007624 1.7798 0.00091446 513.795271760815 75.412 0.36582 75.412 75.205 75.571 0 44 15 4 0 0 0 0.0073675 2 41922 41922;42019 92.491 33.813 1 2061100 58906 5077;5076 39365 40247 68619;68620 68619 0.06394609757489889 SLEGIPLAQV 10 Unmodified _SLEGIPLAQV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6;ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6;ENSG00000138641|ENST00000402738|HERC3;nc|ENSG00000287542|Q15034-2|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138641|ENST00000402738|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7974853515625 2 513.795132 1025.57571 0.41438 0.0002129 0.7938 0.00040785 1.2082 0.00062076 513.7954560918139 75.866 0.29616 75.388 75.255 75.551 -0.47713 27 12 3 0 0 0 0.0032765 1 41515 41515 103.75 51.48 1 2074400 58907 5077;5076 39365 40247 68621 68621 0.06394609757489889 SLEGIPLAQV 10 Unmodified _SLEGIPLAQV_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6;ENST00000506714.5_1_4:89300148-89319290:+|nuORF;nc|ENSG00000138642|Q8IVU3-3|HERC6;ENSG00000138641|ENST00000402738|HERC3;nc|ENSG00000287542|Q15034-2|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138641|ENST00000402738|HERC3 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7943115234375 2 513.795132 1025.57571 0.87091 0.00044747 -2.2271 -0.0011443 -1.3562 -0.00069679 513.793075781333 83.427 0.5062 77.252 76.897 77.403 -6.1757 46 26 2 0 0 0 0.024115 1 54819 54819 71.922 28.15 1 12924000 58908 5077;5076 39365 40247 68622 68622 0.06394609757489889 SLEGRLPEY 9 Unmodified _SLEGRLPEY_ 0 0 0 nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3 nc|ENSG00000198003|A5D8V7-2|ODAD3 nc|ENSG00000198003|A5D8V7-2|ODAD3 MSMS AL20221201_MKP_PDAC_01 4 532.2750854492188 2 532.274564 1062.53457 NaN NaN NaN NaN NaN NaN NaN 40.246 1 35.717 35.217 36.217 -4.5294 0 0 0 0.34649 1 24014 24014 22.736 0 1 58909 10037 39366 40248 68623 68623 0.0058084871798200766 SLEINFSTSI 10 Unmodified _SLEINFSTSI_ 0 0 0 nc|ENSG00000173421|Q8IYA8-2|IHO1;ENSG00000173421|ENST00000452691|IHO1 nc|ENSG00000173421|Q8IYA8-2|IHO1 nc|ENSG00000173421|Q8IYA8-2|IHO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7889404296875 2 555.787504 1109.56045 0.61852 0.00034377 1.2832 0.00071321 1.9018 0.001057 555.7882389495794 93.238 0.95133 92.78 92.56 93.511 -0.4574 124 43 6 0 0 0 0.66569 1 51246 51246 6.7232 0 1 14699000 58910 8323 39367 40249 68624 68624 0.010056981696379808 SLELDGIIY 9 Unmodified _SLELDGIIY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2532653808594 2 511.773865 1021.53318 -0.72865 -0.0003729 3.5945 0.0018396 2.8658 0.0014666 511.7757976731213 78.161 0.21248 77.679 77.611 77.824 -0.4826 12 8 2 0 0 0 0.16229 1 42795 42795 12.532 0 1 908060 58911 6432 39368 40250 68625 68625 0.023272146292470097 SLELDGIIY 9 Unmodified _SLELDGIIY_ 0 0 0 ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK ENSG00000156136|ENST00000286648|DCK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.773865 1021.53318 0.28196 0.0001443 0.11417 5.8427E-05 0.39613 0.00020273 511.77375389245395 77.6 0.23349 77.6 77.561 77.794 0 -0.039209 -0.0021049 NaN 7.9102 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4208200 58912 6432 39368 40250 0.023272146292470097 SLELLDLCL 9 Unmodified _SLELLDLCL_ 0 0 0 REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MSMS AL20221201_MKP_PDAC_01 4 509.777099609375 2 509.778093 1017.54163 NaN NaN NaN NaN NaN NaN NaN 84.736 1 78.56 78.06 79.06 -6.1757 0 0 0 0.18911 1 55769 55769 32.117 6.7177 1 + 58913 21139 39369 40251 68626 68626 0.033564452741984496 SLELRRLM 8 Unmodified _SLELRRLM_ 0 0 0 ENST00000373116.5_1_1:36926896-36929794:-|nuORF ENST00000373116.5_1_1:36926896-36929794:-|nuORF ENST00000373116.5_1_1:36926896-36929794:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.774169921875 2 509.297319 1016.58008 0.29635 0.00015093 2.6451 0.0013471 2.9414 0.0014981 509.29892583759226 84.534 0.48712 78.358 77.996 78.483 -6.1757 34 27 2 0 0 0 8.7369 1 55645 55645 5.7604 0 1 12636000 58914 12401 39370 40252 68627 68627 0.07245795699395785 SLEPIVYEL 9 Unmodified _SLEPIVYEL_ 0 0 0 REV__ENSG00000116991|ENST00000674635|SIPA1L2 REV__ENSG00000116991|ENST00000674635|SIPA1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2901000976562 2 531.789515 1061.56448 0.33529 0.0001783 0.039556 2.1035E-05 0.37485 0.00019934 531.7899245496606 82.822 0.41634 82.822 82.585 83.001 0 51 18 4 0 0 0 0.49766 1 45887 45887 11.64 0 1 2231800 + 58915 19077 39371 40253 68628 68628 0.03615787663329684 SLEPIVYEL 9 Unmodified _SLEPIVYEL_ 0 0 0 REV__ENSG00000116991|ENST00000674635|SIPA1L2 REV__ENSG00000116991|ENST00000674635|SIPA1L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2901000976562 2 531.789515 1061.56448 0.33529 0.0001783 0.039556 2.1035E-05 0.37485 0.00019934 531.7899245496606 82.822 0.41634 82.822 82.585 83.001 0 51 18 4 0 0 0 0.19891 1 45887 45887 11.64 0 1 2231800 + 58916 19077 39371 40253 68629 68629 0.03615787663329684 SLEPWDRLV 9 Unmodified _SLEPWDRLV_ 0 0 0 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 ENSG00000198569|ENST00000673835|SLC34A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8661804199219 3 372.201229 1113.58186 0.018399 6.8482E-06 -1.0933 -0.00040693 -1.0749 -0.00040008 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.51218 4 17956 17956;18062;18171;18403 7.1017 3.5147 1 285750000 58917 10108 39372 40254 68630;68631;68632;68633 68630 0.02961127988987755 SLEQWLQMTMW 11 Unmodified _SLEQWLQMTMW_ 0 0 0 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.8357543945312 2 726.836148 1451.65774 0.036116 2.6251E-05 -0.075614 -5.4959E-05 -0.039498 -2.8708E-05 726.8361316769278 54.954 0.55019 54.476 54.291 54.841 -0.47798 82 26 4 0 0 0 0.6889 1 29918 29918 5.2969 0 1 30990000 58918 4915 39373 40255 68634 68634 -0.050019792174225586 SLEQWLQMTMW 11 Unmodified _SLEQWLQMTMW_ 0 0 0 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 726.836148 1451.65774 0.72731 0.00052864 0.27566 0.00020036 1.003 0.000729 726.8363520322073 54.499 0.26867 54.499 54.352 54.62 0 0.011347 0.00040087 NaN 5.2969 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1739100 58919 4915 39373 40255 -0.050019792174225586 SLEQWLQMTMW 11 Unmodified _SLEQWLQMTMW_ 0 0 0 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 726.836148 1451.65774 0.036116 2.6251E-05 -0.075614 -5.4959E-05 -0.039498 -2.8708E-05 726.8361316769278 54.954 0.55019 54.476 54.291 54.841 -0.47798 -0.011347 -0.00010977 NaN 5.2969 82 26 4 NaN NaN NaN NaN 0 NaN NaN 0 30990000 58920 4915 39373 40255 -0.050019792174225586 SLERLAVEV 9 Unmodified _SLERLAVEV_ 0 0 0 ENST00000507310.1_2_5:102482311-102483895:+|nuORF;ENST00000321521.13_1_5:102482350-102484949:+|nuORF ENST00000507310.1_2_5:102482311-102483895:+|nuORF ENST00000507310.1_2_5:102482311-102483895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2929077148438 2 508.292756 1014.57096 0.095939 4.8765E-05 -0.2611 -0.00013271 -0.16516 -8.3949E-05 508.29272455581525 41.91 0.25987 41.91 41.751 42.011 0 25 13 3 0 0 0 0.07087 1 22634 22634 39.95 0 1 7891600 58921 11771 39374 40256 68635 68635 0.06425725614712974 SLETKERK 8 Unmodified _SLETKERK_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7889404296875 2 495.782556 989.550559 0.65385 0.00032417 -1.055 -0.00052304 -0.40112 -0.00019887 495.7832614320315 79.227 0.15727 78.741 78.619 78.776 -0.48596 9 6 2 0 0 0 0.74163 1 43391 43391 13.508 1.8676 1 556770 + 58922 17662 39375 40257 68636 68636 0.055365549549037496 SLETKERK 8 Unmodified _SLETKERK_ 0 0 0 REV__ENSG00000080298|ENST00000617270|RFX3 REV__ENSG00000080298|ENST00000617270|RFX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 495.782556 989.550559 0.65385 0.00032417 -1.055 -0.00052304 -0.40112 -0.00019887 495.7832614320315 79.227 0.15727 78.741 78.619 78.776 -0.48596 0 0 NaN 13.508 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 556770 + 58923 17662 39375 40257 0.055365549549037496 SLETLAFCGF 10 Unmodified _SLETLAFCGF_ 0 0 0 REV__ENSG00000087008|ENST00000356406|ACOX3 REV__ENSG00000087008|ENST00000356406|ACOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2600708007812 2 544.260068 1086.50558 NaN NaN NaN NaN NaN NaN NaN 82.994 1 82.994 82.494 83.494 0 0 0 0 0.98914 1 46033 46033 1.8442 0 1 + 58924 17774 39376 40258 68637 68637 -0.034210119026511165 SLETRYRW 8 Unmodified _SLETRYRW_ 0 0 0 ENST00000462417.1_1_3:77366333-77366669:-|nuORF ENST00000462417.1_1_3:77366333-77366669:-|nuORF ENST00000462417.1_1_3:77366333-77366669:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7884521484375 2 555.788173 1109.56179 0.46289 0.00025727 -0.37877 -0.00021051 0.084123 4.6755E-05 555.7879669727253 92.69 0.43169 92.69 92.552 92.984 0 51 29 3 0 0 0 0.80676 1 51206 51206 2.5775 0.27475 1 811670 58925 13676 39377 40259 68638 68638 0.011393770490485622 SLETTELGV 9 Unmodified _SLETTELGV_ 0 0 0 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.74755859375 2 474.747847 947.481142 NaN NaN NaN NaN NaN NaN NaN 53.232 1 53.232 52.732 53.732 0 0 0 0 0.096036 1 29491 29491 44.407 0 1 + 58926 24230 39378 40260 68639 68639 0.005300512154803982 SLEWSAVI 8 Unmodified _SLEWSAVI_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.7425231933594 2 452.742368 903.470183 NaN NaN NaN NaN NaN NaN NaN 64.387 1 64.387 63.887 64.887 0 0 0 0 0.97444 1 35907 35907 5.2307 0 1 58927 9023 39379 40261 68640 68640 0.014586936318664812 SLEYFARL 8 Unmodified _SLEYFARL_ 0 0 0 REV__nc|ENSG00000100151|Q9NRD5-2|PICK1 REV__nc|ENSG00000100151|Q9NRD5-2|PICK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2696228027344 2 499.768917 997.523281 -0.32404 -0.00016195 1.4719 0.0007356 1.1478 0.00057365 499.76952273986944 60.719 0.34408 60.229 60.03 60.374 -0.48932 26 15 2 0 0 0 0.72953 1 33014 33014 14.582 0 1 8560000 + 58928 18020 39380 40262 68641 68641 0.024420714145321654 SLEYGGFFFF 10 Unmodified _SLEYGGFFFF_ 0 0 0 REV__ENSG00000120329|ENST00000239451|SLC25A2;REV__ENSG00000102743|ENST00000338625|SLC25A15 REV__ENSG00000120329|ENST00000239451|SLC25A2 MSMS AL20221201_MKP_PDAC_01 4 405.190185546875 3 405.19033 1212.54916 NaN NaN NaN NaN NaN NaN NaN 74.43 1 68.254 67.754 68.754 -6.1757 0 0 0 0.92825 1 48659 48659 3.5871 0.95582 1 + 58929 19238;18250 39381 40263 68642 68642 -0.048610791338433046 SLFAQDNQL 9 Unmodified _SLFAQDNQL_ 0 0 0 REV__ENST00000374515.9_1_9:113013638-113013674:-|nuORF REV__ENST00000374515.9_1_9:113013638-113013674:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7865600585938 2 518.258914 1034.50327 0.49275 0.00025537 0.4948 0.00025644 0.98756 0.00051181 518.7618530774645 74.872 0.23656 74.872 74.693 74.93 0 14 10 2 0 0 0 0.16785 1 41580 41580 11.64 0 1 437370 + 58930 26182 39382 40264 68643 68643 -0.012597243161053484 SLFDLFRGF 9 Unmodified _SLFDLFRGF_ 0 0 0 nc|ENSG00000143575|O00165-4|HAX1;ENST00000531435.5_1_1:154245130-154246130:+|nuORF;nc|ENSG00000143575|O00165-6|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1;ENST00000532105.1_1_1:154245163-154246265:+|nuORF;nc|ENSG00000143575|O00165-5|HAX1 nc|ENSG00000143575|O00165-4|HAX1 nc|ENSG00000143575|O00165-4|HAX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2650756835938 2 551.290017 1100.56548 0.42877 0.00023638 0.6144 0.00033871 1.0432 0.00057509 551.2903830978097 63.242 0.17465 62.756 62.642 62.816 -0.48617 13 7 2 0 0 0 0.19891 1 34473 34473 11.64 0 1 835530 58931 5529 39383 40265 68644 68644 0.019220468228922982 SLFDLNFQA 9 Unmodified _SLFDLNFQA_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.76416015625 2 527.763832 1053.51311 0.4193 0.00022129 0.15809 8.3436E-05 0.57739 0.00030473 527.7638778798524 91.482 0.23498 91.482 91.366 91.601 0 21 14 2 0 0 0 0.55144 1 50560 50560 4.3292 0 1 431960 58932 8942 39384 40266 68645 68645 -0.011505363107289668 SLFDLNFQA 9 Unmodified _SLFDLNFQA_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.763916015625 2 527.763832 1053.51311 0.33955 0.0001792 2.2688 0.0011974 2.6084 0.0013766 527.7656364884373 92.043 0.64461 91.562 91.169 91.813 -0.48092 86 37 4 0 0 0 0.05447 3 50274 50270;50274;50370 43.858 9.7559 1 5697000 58933 8942 39384 40266 68646;68647;68648 68647 -0.011505363107289668 SLFDLNFQA 9 Unmodified _SLFDLNFQA_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7639770507812 2 527.763832 1053.51311 1.0552 0.00055691 -0.0036625 -1.9329E-06 1.0516 0.00055498 527.7637838112581 91.552 0.47945 91.588 91.297 91.777 0.036507 51 17 5 0 0 0 0.0090948 2 50866 50866;50960 85.272 27.801 1 36115000 58934 8942 39384 40266 68649;68650 68649 -0.011505363107289668 SLFDLNFQA 9 Unmodified _SLFDLNFQA_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7644653320312 2 527.763832 1053.51311 0.40255 0.00021245 0.62445 0.00032956 1.027 0.00054202 527.7640610118257 99.711 0.22189 93.535 93.416 93.638 -6.1757 48 14 4 0 0 0 0.011968 1 66436 66436 74.929 26.583 1 956860000 58935 8942 39384 40266 68651 68651 -0.011505363107289668 SLFDLNFQA 9 Unmodified _SLFDLNFQA_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.763832 1053.51311 0.4193 0.00022129 0.15809 8.3436E-05 0.57739 0.00030473 527.7638778798524 91.482 0.23498 91.482 91.366 91.601 0 -0.061788 -2.0025E-05 NaN 85.272 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 431960 58936 8942 39384 40266 -0.011505363107289668 SLFDQDGWT 9 Unmodified _SLFDQDGWT_ 0 0 0 REV__nc|ENSG00000037280|P35916-3|FLT4 REV__nc|ENSG00000037280|P35916-3|FLT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7348022460938 2 534.735271 1067.45599 NaN NaN NaN NaN NaN NaN NaN 55.606 1 55.606 55.106 56.106 0 0 0 0 0.7453 1 30898 30898 7.9102 0 1 + 58937 17172 39385 40267 68652 68652 -0.07504003587109764 SLFEEMLQV 9 Oxidation (M) _SLFEEM(Oxidation (M))LQV_ SLFEEM(1)LQV SLFEEM(42)LQV 0 0 1 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2714233398438 2 556.270632 1110.52671 NaN NaN NaN NaN NaN NaN NaN 72.068 1 72.068 71.568 72.568 0 0 0 0 0.10545 1 40133 40133 42.095 20.348 1 58938 1883 39386 40268 68653 68653 314 -0.024130465938014822 SLFEEMLQV 9 Unmodified _SLFEEMLQV_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2725219726562 2 548.273175 1094.5318 0.31038 0.00017017 -0.69162 -0.0003792 -0.38124 -0.00020902 548.2728126865678 96.118 0.34952 95.813 95.66 96.009 -0.30472 31 18 3 0 0 0 0.41742 1 52477 52477 11.64 2.2929 1 653980 58939 1883 39386 40269 68654 68654 -0.011687427311699139 SLFEEMLQV 9 Unmodified _SLFEEMLQV_ 0 0 0 nc|ENSG00000100883|P61011-2|SRP54;ENSG00000100883|ENST00000216774|SRP54 nc|ENSG00000100883|P61011-2|SRP54 nc|ENSG00000100883|P61011-2|SRP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2741088867188 2 548.273175 1094.5318 0.9147 0.00050151 -0.85519 -0.00046888 0.059517 3.2632E-05 548.2730281129951 100.5 0.14622 94.321 94.228 94.374 -6.1757 20 8 3 0 0 0 0.026094 1 67214 67214 57.471 25.166 1 74808000 58940 1883 39386 40269 68655 68655 -0.011687427311699139 SLFEGTWYL 9 Unmodified _SLFEGTWYL_ 0 0 0 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 ENSG00000112972|ENST00000325110|HMGCS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.275390625 2 558.274032 1114.53351 1.1893 0.00066396 -0.36766 -0.00020526 0.82165 0.00045871 558.2735780529198 100.74 0.095886 94.561 94.503 94.599 -6.1757 13 6 3 0 0 0 0.28047 1 67440 67440 18.135 2.2878 1 28312000 58941 2933 39387 40270 68656 68656 -0.019173656509110515 SLFEHFIEL 9 Unmodified _SLFEHFIEL_ 0 0 0 nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;WDFY3|p.R1802Gfs*50|1|0.1|ENSG00000163625|chr4:84756946-84756946|G/-|frameshift_variant nc|ENSG00000163625|Q8IZQ1-2|WDFY3 nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.795166015625 2 567.795132 1133.57571 0.62427 0.00035446 -0.11969 -6.7959E-05 0.50458 0.0002865 567.7949210933401 88.735 0.30132 88.231 88.046 88.347 -0.50423 19 12 2 0 0 0 0.54213 1 48499 48499 7.9102 3.9658 1 557720 58942 7032 39388 40271 68657 68657 0.014266097574591186 SLFERLVKV 9 Unmodified _SLFERLVKV_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2253112792969 3 364.225486 1089.65463 0.2189 7.9731E-05 0.24748 9.0137E-05 0.46638 0.00016987 364.2255389272211 59.7 0.2412 59.647 59.535 59.776 -0.053059 30 11 3 0 0 0 0.094149 1 32528 32528 32.037 15.472 1 15506000 58943 3760 39389 40272 68658 68658 0.11338881782398857 SLFERLVKV 9 Unmodified _SLFERLVKV_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5608825683594 3 364.225486 1089.65463 0.92462 0.00033677 0.51968 0.00018928 1.4443 0.00052605 364.2256844815793 92.979 0.26698 86.803 86.697 86.964 -6.1757 38 16 4 0 0 0 0.025842 1 61478 61478 46.022 13.985 1 49267000 58944 3760 39389 40272 68659 68659 0.11338881782398857 SLFERLVVL 9 Unmodified _SLFERLVVL_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3298950195312 2 538.329142 1074.64373 -0.23956 -0.00012896 0.34643 0.0001865 0.10688 5.7536E-05 538.3290935399953 85.655 0.33884 85.716 85.539 85.878 0.061646 23 11 3 0 0 0 0.040337 1 47395 47395 53.404 19.959 1 35301000 58945 293 39390 40273 68660 68660 0.10939479408125408 SLFERLVVL 9 Unmodified _SLFERLVVL_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.329345703125 2 538.329142 1074.64373 0.42493 0.00022875 0.86805 0.0004673 1.293 0.00069605 538.3295851674438 99.618 0.1921 93.442 93.365 93.558 -6.1757 27 11 4 0 0 0 0.052231 1 66398 66398 40.239 15.248 1 133150000 58946 293 39390 40273 68661 68661 0.10939479408125408 SLFEVFGYG 9 Unmodified _SLFEVFGYG_ 0 0 0 REV__ENSG00000143368|ENST00000271628|SF3B4 REV__ENSG00000143368|ENST00000271628|SF3B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7467651367188 2 509.74765 1017.48075 -0.30579 -0.00015587 -3.2341 -0.0016486 -3.5399 -0.0018045 509.74592917371115 34.77 0.22811 34.77 34.636 34.864 0 17 11 2 0 0 0 0.32871 1 18350 18350 15.847 4.2069 1 2304600 + 58947 20628 39391 40274 68662 68662 -0.02729323713708709 SLFFHTQRMWL 11 Unmodified _SLFFHTQRMWL_ 0 0 0 REV__ENST00000467465.1_1_6:32976062-32977313:-|nuORF REV__ENST00000467465.1_1_6:32976062-32977313:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 733.3743896484375 2 733.374089 1464.73363 NaN NaN NaN NaN NaN NaN NaN 84.969 1 85.032 84.532 85.532 0.063171 0 0 0 0.94184 1 47033 47033 1.1933 0 1 + 58948 27434 39392 40275 68663 68663 0.019847857450258743 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2659912109375 2 454.26601 906.517468 -0.086214 -3.9164E-05 0.77634 0.00035267 0.69013 0.0003135 454.26624825393367 61.563 0.33952 61.074 60.902 61.242 -0.48841 38 15 3 0 0 0 0.06294 1 33493 33493 41.84 5.7954 1 12011000 58949 7963 39393 40276 68664 68664 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2661437988281 2 454.26601 906.517468 0.62024 0.00028175 -0.29878 -0.00013573 0.32146 0.00014603 454.2658241695974 61.194 0.45754 61.151 60.906 61.364 -0.04351 64 22 4 0 0 0 0.039985 1 33427 33427 49.933 3.912 1 159110000 58950 7963 39393 40276 68665 68665 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2662658691406 2 454.26601 906.517468 0.6274 0.00028501 -0.01462 -6.6412E-06 0.61278 0.00027836 454.2659716320093 66.801 0.76228 60.625 60.368 61.13 -6.1757 103 42 4 0 0 0 0.036857 3 43601 43335;43465;43601 51.63 9.5352 1 216920000 58951 7963 39393 40276 68666;68667;68668 68668 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2666320800781 2 454.26601 906.517468 0.97884 0.00044466 -0.52492 -0.00023845 0.45393 0.0002062 454.2658378132361 69.493 0.8387 63.317 62.556 63.394 -6.1757 63 45 2 0 0 0 0.040683 3 45276 45144;45276;45414 49.554 9.6554 1 35784000 58952 7963 39393 40276 68669;68670;68671 68670 0.06046972902856851 SLFGGSVKL 9 Unmodified _SLFGGSVKL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS AL20221201_MKP_PDAC_01 4 454.2663879394531 2 454.26601 906.517468 NaN NaN NaN NaN NaN NaN NaN 69.715 1 63.539 63.039 64.039 -6.1757 0 0 0 0.059498 1 45534 45534 53.833 15.859 1 58953 7963 39393 40276 68672 68672 0.06046972902856851 SLFKDGKL 8 Unmodified _SLFKDGKL_ 0 0 0 nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENSG00000144591|ENST00000313597|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA nc|ENSG00000144591|Q96IJ6-2|GMPPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.2659606933594 2 454.26601 906.517468 -0.086214 -3.9164E-05 0.77634 0.00035267 0.69013 0.0003135 454.26624825393367 61.563 0.33952 61.074 60.902 61.242 -0.48841 38 15 3 0 0 0 0.71527 1 33601 33601 15.847 0 1 12011000 58954 16251 39394 40277 68673 68673 0.06046972902856851 SLFKFWRL 8 Unmodified _SLFKFWRL_ 0 0 0 ENST00000256649.8_1_1:117663878-117664328:-|nuORF ENST00000256649.8_1_1:117663878-117664328:-|nuORF ENST00000256649.8_1_1:117663878-117664328:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.2144470214844 3 366.214922 1095.62294 NaN NaN NaN NaN NaN NaN NaN 57.31 1 51.283 50.783 51.783 -6.0275 0 0 0 0.93066 1 36650 36650 10.824 0 1 58955 11184 39395 40278 68674 68674 0.07894933819125072 SLFKGICAL 9 Carbamidomethyl (C) _SLFKGIC(Carbamidomethyl (C))AL_ SLFKGIC(1)AL SLFKGIC(79)AL 0 1 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7811279296875 2 504.78097 1007.54739 0.089405 4.513E-05 0.21536 0.00010871 0.30477 0.00015384 504.7811228581893 85.258 0.55789 79.083 78.803 79.361 -6.1757 53 34 2 0 0 0 0.010611 2 56096 56096;56248 78.728 34.87 1 21769000 58956 9843 39396 40279 68675;68676 68675 898 0.04391588576538652 SLFKIWLV 8 Unmodified _SLFKIWLV_ 0 0 0 ENSG00000128607|ENST00000335420|KLHDC10;nc|ENSG00000128607|Q6PID8-2|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 ENSG00000128607|ENST00000335420|KLHDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3102722167969 2 503.310221 1004.60589 2.1706 0.0010925 0.53491 0.00026923 2.7056 0.0013617 503.31035834363547 95.304 0.2715 95.308 95.158 95.43 0.004158 16 9 2 0 0 0 0.63229 1 52947 52947 23.148 0 1 1450900 58957 4078 39397 40280 68677 68677 0.10377013213326336 SLFKRMQEL 9 Unmodified _SLFKRMQEL_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20221201_MKP_PDAC_01 4 384.8824768066406 3 384.546231 1150.61686 NaN NaN NaN NaN NaN NaN NaN 17.48 1 14.893 14.393 15.393 -2.5866 0 0 0 0.76439 1 9143 9143 4.5289 0 1 + 58958 23893 39398 40281 68678 68678 0.04758047525319853 SLFKSKKPRHR 11 Unmodified _SLFKSKKPRHR_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2825317382812 3 461.949239 1382.82589 0.69095 0.00031918 -0.92285 -0.00042631 -0.2319 -0.00010713 461.94842809758086 101.73 0.11292 95.55 95.461 95.574 -6.1757 13 5 3 0 0 0 0.7326 1 68287 68287 0.40827 0 1 35146000 58959 3826 39399 40282 68679 68679 0.14978631873577797 SLFLFDGSPT 10 Unmodified _SLFLFDGSPT_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.8509216308594 3 361.850085 1082.52843 0.91479 0.00033102 -1.3831 -0.00050049 -0.46834 -0.00016947 361.85045753188166 24.623 0.32899 21.74 21.559 21.888 -2.8831 30 17 2 0 0 0 0.62068 1 13375 13375 5.7834 0 1 3528500 58960 7904 39400 40283 68680 68680 -0.009536695135238915 SLFNKLVEL 9 Unmodified _SLFNKLVEL_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.813232421875 2 531.813325 1061.6121 0.29709 0.000158 0.67449 0.0003587 0.97158 0.0005167 531.8135494050277 78.123 0.28965 78.175 78.037 78.327 0.052452 18 11 2 0 0 0 0.022461 1 43137 43137 61.09 29.822 1 2901300 58961 5064 39401 40284 68681 68681 0.08375486654176711 SLFNKLVEL 9 Unmodified _SLFNKLVEL_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8134765625 2 531.813325 1061.6121 1.3421 0.00071375 -0.53257 -0.00028323 0.80953 0.00043052 531.8127401103211 98.121 0.12144 91.946 91.847 91.968 -6.1757 12 7 2 0 0 0 0.062454 1 65065 65065 41.956 11.319 1 22652000 58962 5064 39401 40284 68682 68682 0.08375486654176711 SLFNKLVEL 9 Unmodified _SLFNKLVEL_ 0 0 0 nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L nc|ENSG00000138593|Q93073-2|SECISBP2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.813325 1061.6121 -0.050883 -2.706E-05 1.6209 0.000862 1.57 0.00083494 532.3154093320077 78.675 0.18391 78.189 78.139 78.323 -0.48596 0.0071036 0.00089383 NaN 61.09 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 299410 58963 5064 39401 40284 0.08375486654176711 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2872619628906 2 495.286943 988.559333 0.217 0.00010748 0.60403 0.00029917 0.82103 0.00040665 495.2870977796867 66.193 0.48461 65.71 65.5 65.984 -0.48323 49 25 3 0 0 0 0.078314 1 36073 36073 38.176 16.429 1 20486000 58964 8706 39402 40285 68683 68683 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2885131835938 2 495.286943 988.559333 0.8341 0.00041312 0.26869 0.00013308 1.1028 0.0005462 495.28709894936014 76.034 1.05 69.858 69.009 70.059 -6.1757 76 56 2 0 0 0 0.1685 1 49346 49346 26.268 2.2476 1 12830000 58965 8706 39402 40285 68684 68684 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 495.2865905761719 2 495.286943 988.559333 NaN NaN NaN NaN NaN NaN NaN 76.323 1 70.147 69.647 70.647 -6.1757 0 0 0 0.10661 1 49924 49924 41.956 1.9982 1 58966 8706 39402 40285 68685 68685 0.0645952859136969 SLFPGKLEV 9 Unmodified _SLFPGKLEV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 495.286943 988.559333 1.0072 0.00049886 -0.95921 -0.00047508 0.047999 2.3773E-05 495.2862572192675 65.69 0.33942 65.69 65.562 65.901 7.6294E-06 -0.010004 -0.0011408 NaN 38.176 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3243600 58967 8706 39402 40285 0.0645952859136969 SLFPGKLEVV 10 Unmodified _SLFPGKLEVV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8211669921875 2 544.82115 1087.62775 0.25777 0.00014044 0.44053 0.00024001 0.6983 0.00038045 544.8214955952611 71.258 0.38728 70.78 70.611 70.998 -0.47736 40 16 3 0 0 0 0.36296 1 38996 38996 23.79 7.6407 1 3380600 58968 8706 39403 40286 68686 68686 0.08743773171227076 SLFPGKLEVV 10 Unmodified _SLFPGKLEVV_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 544.82115 1087.62775 1.0116 0.00055113 -0.14318 -7.8008E-05 0.86839 0.00047312 544.8210379553649 70.735 0.32362 70.771 70.592 70.915 0.035515 -0.0047562 -0.00046078 NaN 23.79 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2280100 58969 8706 39403 40286 0.08743773171227076 SLFQEDWT 8 Unmodified _SLFQEDWT_ 0 0 0 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 ENSG00000168434|ENST00000307149|COG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2317504882812 2 513.232364 1024.45018 0.32253 0.00016553 0.37346 0.00019167 0.69598 0.0003572 513.2325706210884 66.112 0.3092 66.112 65.995 66.304 0 21 14 2 0 0 0 0.48669 1 36839 36839 36.044 3.7387 1 2427600 58970 7763 39404 40287 68687 68687 -0.06107102098769701 SLFQESAAVF 10 Unmodified _SLFQESAAVF_ 0 0 0 REV__ENSG00000137857|ENST00000389037|DUOX1 REV__ENSG00000137857|ENST00000389037|DUOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.779052734375 2 549.776939 1097.53933 0.32434 0.00017832 -0.4993 -0.00027451 -0.17496 -9.6188E-05 549.7765913785838 52.561 0.77422 52.561 52.287 53.061 0 102 35 4 0 0 0 0.40136 1 29244 29244 21.537 2.28 1 202270000 + 58971 20276 39405 40288 68688 68688 -0.005542671392504417 SLFQETHFQVM 11 Unmodified _SLFQETHFQVM_ 0 0 0 ENST00000296161.8_1_3:122288743-122288839:+|nuORF ENST00000296161.8_1_3:122288743-122288839:+|nuORF ENST00000296161.8_1_3:122288743-122288839:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.5550842285156 3 456.220184 1365.63872 -0.05619 -2.5635E-05 0.83413 0.00038055 0.77794 0.00035491 456.2204888768197 33.49 0.59915 33.49 33.327 33.926 0 103 44 3 0 0 0 0.60536 2 17527 17527;17636 11.065 6.6591 1 37278000 58972 11504 39406 40289 68689;68690 68689 -0.0294719251683091 SLFQETHFQVM 11 Unmodified _SLFQETHFQVM_ 0 0 0 ENST00000296161.8_1_3:122288743-122288839:+|nuORF ENST00000296161.8_1_3:122288743-122288839:+|nuORF ENST00000296161.8_1_3:122288743-122288839:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 456.220184 1365.63872 -0.05619 -2.5635E-05 0.83413 0.00038055 0.77794 0.00035491 456.2204888768197 33.49 0.59915 33.49 33.327 33.926 0 0 0 NaN 11.065 103 44 3 NaN NaN NaN NaN 0 NaN NaN 0 37278000 58973 11504 39406 40289 -0.0294719251683091 SLFQQHPQL 9 Unmodified _SLFQQHPQL_ 0 0 0 REV__ENSG00000170396|ENST00000302277|ZNF804A REV__ENSG00000170396|ENST00000302277|ZNF804A MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5311584472656 3 366.529458 1096.56654 1.6248 0.00059554 2.3708 0.00086897 3.9956 0.0014645 366.53060131273963 79.159 0.60255 72.983 72.564 73.167 -6.1757 55 33 2 0 0 0 0.36964 1 51713 51713 9.544 1.5986 1 7063100 + 58974 22478 39407 40290 68691 68691 0.022122611917893664 SLFRPTLVI 9 Unmodified _SLFRPTLVI_ 0 0 0 REV__ENSG00000254852|ENST00000529166|NPIPA2 REV__ENSG00000254852|ENST00000529166|NPIPA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.7977294921875 2 523.32386 1044.63317 0.86799 0.00045424 -0.21478 -0.0001124 0.65321 0.00034184 523.3241923713929 92.543 0.38972 86.367 86.185 86.575 -6.1757 60 23 3 0 0 0 0.18118 1 61188 61188 19.257 2.3147 1 29088000 + 58975 24382 39408 40291 68692 68692 0.1126349675369056 SLFRRDDNKDI 11 Unmodified _SLFRRDDNKDI_ 0 0 0 ENSG00000113649|ENST00000679501|TCERG1 ENSG00000113649|ENST00000679501|TCERG1 ENSG00000113649|ENST00000679501|TCERG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.359619140625 2 689.857315 1377.70008 -0.042709 -2.9463E-05 1.3885 0.00095788 1.3458 0.00092842 689.8582426189871 48.129 0.27668 48.129 47.995 48.272 0 41 13 4 0 0 0 0.29134 1 26352 26352 8.1555 0 1 26785000 58976 2988 39409 40292 68693 68693 0.026334555068388 SLFRVITEV 9 Unmodified _SLFRVITEV_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3114013671875 2 532.310949 1062.60735 0.49066 0.00026118 0.86517 0.00046054 1.3558 0.00072172 532.3113175322717 70.179 0.2421 70.214 70.094 70.336 0.035515 30 11 3 0 0 0 0.0081887 1 38607 38607 93.166 40.898 1 6797500 58977 6106 39410 40293 68694 68694 0.07854602511406483 SLFRVITEV 9 Unmodified _SLFRVITEV_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3108520507812 2 532.310949 1062.60735 1.312 0.0006984 -0.89313 -0.00047542 0.41888 0.00022297 532.310304645165 95.594 0.35366 89.418 89.23 89.584 -6.1757 42 21 3 0 0 0 0.0093064 1 63282 63282 83.429 39.57 1 40964000 58978 6106 39410 40293 68695 68695 0.07854602511406483 SLFRVITEV 9 Unmodified _SLFRVITEV_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.310949 1062.60735 0.30736 0.00016361 -2.6925 -0.0014333 -2.3852 -0.0012696 532.3090375877798 70.805 0.2084 70.328 70.202 70.411 -0.47735 0.056752 -0.0036199 NaN 93.166 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1261000 58979 6106 39410 40293 0.07854602511406483 SLFSAVHKI 9 Unmodified _SLFSAVHKI_ 0 0 0 ENSG00000147475|ENST00000519638|ERLIN2;ENST00000519872.1_1_8:37594193-37598024:+|nuORF;nc|ENSG00000147475|O94905-2|ERLIN2;nc|ENSG00000147475|O94905-3|ERLIN2 ENSG00000147475|ENST00000519638|ERLIN2 ENSG00000147475|ENST00000519638|ERLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.292724609375 2 501.292559 1000.57057 0.53552 0.00026845 0.65392 0.0003278 1.1894 0.00059626 501.2926135942965 46.087 0.19887 46.059 45.926 46.125 -0.028011 19 8 3 0 0 0 0.094149 1 24777 24777 34.402 7.5181 1 2145600 58980 5856 39411 40294 68696 68696 0.07030350685522535 SLFTEGHTDI 10 Unmodified _SLFTEGHTDI_ 0 0 0 REV__ENSG00000070367|ENST00000621441|EXOC5 REV__ENSG00000070367|ENST00000621441|EXOC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8484191894531 3 373.848744 1118.5244 NaN NaN NaN NaN NaN NaN NaN 70.583 1 70.106 69.606 70.606 -0.47735 0 0 0 0.94014 1 38616 38616 3.3196 0.88486 1 + 58981 17469 39412 40295 68697 68697 -0.03011759007222281 SLFVSNIK 8 Unmodified _SLFVSNIK_ 0 0 0 REV__ENST00000272748.8_1_2:176857015-176857093:-|nuORF REV__ENST00000272748.8_1_2:176857015-176857093:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2662963867188 2 454.26601 906.517468 0.62024 0.00028175 -0.29878 -0.00013573 0.32146 0.00014603 454.2658241695974 61.194 0.45754 61.151 60.906 61.364 -0.04351 64 22 4 0 0 0 0.36356 1 33315 33315 48.346 2.6462 1 159110000 + 58982 25150 39413 40296 68698 68698 0.06046972902845482 SLGAWCCRL 9 Unmodified _SLGAWCCRL_ 0 0 0 REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF REV__ENST00000527372.6_2_17:27400982-27401243:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2721862792969 2 504.741322 1007.46809 0.26386 0.00013318 -2.825 -0.0014259 -2.5611 -0.0012927 504.74005482373684 70.481 0.38022 70.481 70.185 70.565 0 23 15 2 0 0 0 0.18118 1 39111 39111 12.532 3.9383 1 287190 + 58983 28389 39414 40297 68699 68699 -0.03534381649262741 SLGAYISTL 9 Unmodified _SLGAYISTL_ 0 0 0 nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000570001.5_1_16:15069056-15125764:+|nuORF;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;PDXDC1|p.G95E|1|0.03|ENSG00000179889|chr16:15004228-15004228|G/A|missense_variant nc|ENSG00000179889|Q6P996-2|PDXDC1 nc|ENSG00000179889|Q6P996-2|PDXDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.501708984375 1 924.503674 923.496398 0.98475 0.0009104 -0.2139 -0.00019775 0.77085 0.00071265 924.5033059886299 74.509 0.58591 68.334 68.02 68.606 -6.1757 61 30 3 0 0 0 0.012148 1 48567 48567 74.423 0 1 34123000 58984 8863 39415 40298 68700 68700 0.031589628033202644 SLGHCTNMLPI 11 Unmodified _SLGHCTNMLPI_ 0 0 0 ENST00000474610.1_1_2:33952107-33952842:-|nuORF ENST00000474610.1_1_2:33952107-33952842:-|nuORF ENST00000474610.1_1_2:33952107-33952842:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 593.2940673828125 2 593.291376 1184.5682 NaN NaN NaN NaN NaN NaN NaN 88.869 1 82.694 82.194 83.194 -6.1757 0 0 0 0.58065 1 58646 58646 21.537 0 1 58985 13942 39416 40299 68701 68701 -0.016701891061075003 SLGHGPAP 8 Unmodified _SLGHGPAP_ 0 0 0 ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 734.83203125 1 735.378414 734.371138 0.22156 0.00016293 3.2018 0.0023545 3.4234 0.0025175 735.3800817755316 52.02 0.19661 51.586 51.512 51.709 -0.43367 11 9 2 0 0 0 8.7369 1 28058 28058 14.582 0 1 979390 58986 15663 39417 40300 68702 68702 -0.006672845423850049 SLGISAIGFF 10 Unmodified _SLGISAIGFF_ 0 0 0 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 REV__nc|ENSG00000204624|Q9P2K9-2|DISP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7820434570312 2 506.279118 1010.54368 0.8912 0.00045119 0.14175 7.1765E-05 1.0329 0.00052296 506.2790949523062 52.6 0.26133 52.541 52.407 52.669 -0.058918 30 12 3 0 0 0 0.31022 1 28486 28486 26.884 0.61551 1 5158600 + 58987 24191 39418 40301 68703 68703 0.03883242074323334 SLGKSEVLI 9 Unmodified _SLGKSEVLI_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2844543457031 2 473.2844 944.554247 NaN NaN NaN NaN NaN NaN NaN 83.288 1 82.791 82.291 83.291 -0.49751 0 0 0 0.82396 1 45592 45592 4.756 0 1 58988 7705 39419 40302 68704 68704 0.079752247287729 SLGLGESLYI 10 Unmodified _SLGLGESLYI_ 0 0 0 nc|ENSG00000062524|P29376-5|LTK;nc|ENSG00000062524|P29376-2|LTK;nc|ENSG00000062524|P29376-3|LTK;ENST00000563518.5_1_15:41799676-41805922:-|nuORF;nc|ENSG00000062524|P29376-4|LTK;ENSG00000062524|ENST00000263800|LTK nc|ENSG00000062524|P29376-5|LTK nc|ENSG00000062524|P29376-5|LTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.286376953125 2 526.28714 1050.55973 1.1382 0.00059901 -0.95248 -0.00050128 0.1857 9.7734E-05 526.2865930484571 54.384 0.30646 54.384 54.246 54.553 0 24 13 2 0 0 0 0.04925 1 30178 30178 58.679 11.084 1 5216800 58989 16038 39420 40303 68705 68705 0.03646903520575506 SLGPDTVTMWD 11 Unmodified _SLGPDTVTMWD_ 0 0 0 REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.3042602539062 2 611.276446 1220.53834 0.12091 7.3907E-05 -0.53778 -0.00032873 -0.41688 -0.00025483 611.2760996529597 51.754 0.08802 51.754 51.689 51.777 0 6 3 2 0 0 0 0.29698 1 28603 28603 5.2969 0 1 658820 + 58990 19090 39421 40304 68706 68706 -0.06310849570422761 SLGPESWQQ 9 Unmodified _SLGPESWQQ_ 0 0 0 ENST00000485631.1_1_22:18189492-18210297:+|nuORF;nc|ENSG00000099968|Q9BXK5-4|BCL2L13;ENSG00000099968|ENST00000317582|BCL2L13 ENST00000485631.1_1_22:18189492-18210297:+|nuORF ENST00000485631.1_1_22:18189492-18210297:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7872924804688 2 516.243264 1030.47197 -0.1716 -8.8586E-05 -0.11508 -5.9412E-05 -0.28668 -0.000148 516.2432903893597 24.277 0.26635 24.277 24.138 24.405 0 39 17 3 0 0 0 0.20727 1 12340 12340 7.9102 0.62092 1 3067500 58991 1730 39422 40305 68707 68707 -0.04204297350179331 SLGQILCII 9 Unmodified _SLGQILCII_ 0 0 0 ENST00000358678.7_1_12:93873234-93881330:+|nuORF ENST00000358678.7_1_12:93873234-93881330:+|nuORF ENST00000358678.7_1_12:93873234-93881330:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2828063964844 2 480.283346 958.552139 0.60382 0.00029 -1.4067 -0.0006756 -0.80285 -0.0003856 480.28285764792406 85.925 0.34282 85.424 85.229 85.572 -0.5015 20 13 2 0 0 0 0.49272 1 47014 47014 7.9102 0 1 283080 58992 12131 39423 40306 68708 68708 0.07120472719293502 SLGRFEITV 9 Unmodified _SLGRFEITV_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2878112792969 2 511.287474 1020.5604 0.25852 0.00013218 0.024927 1.2745E-05 0.28345 0.00014492 511.28760252094537 63.009 0.22578 62.523 62.44 62.665 -0.48617 16 10 2 0 0 0 0.085319 1 34376 34376 36.506 6.2814 1 3193300 58993 1034 39424 40307 68709 68709 0.05093742960286818 SLGTLNYLP 9 Unmodified _SLGTLNYLP_ 0 0 0 REV__ENSG00000176658|ENST00000318217|MYO1D REV__ENSG00000176658|ENST00000318217|MYO1D MSMS AL20221201_MKP_PDAC_01 4 488.7855224609375 2 489.26875 976.522947 NaN NaN NaN NaN NaN NaN NaN 45.979 1 41.024 40.524 41.524 -4.9549 0 0 0 0.23581 1 28320 28320 28.487 4.4663 1 + 58994 22938 39425 40308 68710 68710 0.033746516946507654 SLGVFFFSF 9 Unmodified _SLGVFFFSF_ 0 0 0 ENST00000312989.11_1_11:67165675-67165951:-|nuORF ENST00000312989.11_1_11:67165675-67165951:-|nuORF ENST00000312989.11_1_11:67165675-67165951:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.2890625 2 525.768386 1049.52222 0.9911 0.00052109 -1.5218 -0.00080014 -0.53075 -0.00027905 526.2686644395219 63.521 0.34973 57.345 57.156 57.506 -6.1757 33 19 2 0 0 0 0.18521 1 40958 40958 11.64 0 1 10112000 58995 11706 39426 40309 68711 68711 -0.0005614295437226247 SLGVMMFFF 9 Unmodified _SLGVMMFFF_ 0 0 0 ENST00000511348.1_1_4:100870606-100871327:-|nuORF;ENST00000511203.1_1_4:100870606-100870912:-|nuORF ENST00000511348.1_1_4:100870606-100871327:-|nuORF ENST00000511348.1_1_4:100870606-100871327:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7825317382812 2 539.758649 1077.50275 0.5726 0.00030907 -0.47884 -0.00025846 0.093767 5.0612E-05 539.758386847426 75.463 0.28936 74.986 74.945 75.235 -0.47714 21 15 2 0 0 0 0.20528 1 41396 41396 8.5933 0.68312 1 1064200 58996 14605 39427 40310 68712 68712 -0.032905585611615606 SLGVNEPCYGY 11 Unmodified _SLGVNEPCYGY_ 0 0 0 REV__ENST00000493967.1_1_1:62330125-62331056:+|nuORF REV__ENST00000493967.1_1_1:62330125-62331056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.2642211914062 2 601.263339 1200.51212 -0.036863 -2.2164E-05 1.9422 0.0011678 1.9053 0.0011456 601.2643916438666 52.662 0.26417 52.662 52.508 52.773 0 24 11 3 0 0 0 0.65108 1 29137 29137 8.7454 0.58988 1 3709100 + 58997 27931 39428 40311 68713 68713 -0.08011118741933387 SLGWPNGLAL 10 Unmodified _SLGWPNGLAL_ 0 0 0 LRP6-PTPRO|1|fusion;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L;PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;ENSG00000070018|ENST00000261349|LRP6 LRP6-PTPRO|1|fusion;nc|ENSG00000290796|A4QPB2-2|LRP5L;PPP6R3-LRP5|3|fusion;ENSG00000070018|ENST00000261349|LRP6 PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.28271484375 2 514.282192 1026.54983 0.86264 0.00044364 0.42592 0.00021904 1.2886 0.00066269 514.2823531754722 80.182 0.67985 79.693 79.354 80.034 -0.48933 66 26 3 0 0 0 0.50362 1 43899 43899 16.149 0.30192 1 2959400 58998 16693;1015;15979;16638 39429 40312 68714 68714 0.037617603058379245 SLGWPNGLAL 10 Unmodified _SLGWPNGLAL_ 0 0 0 LRP6-PTPRO|1|fusion;nc|ENSG00000290796|A4QPB2-2|LRP5L;nc|ENSG00000290796|A4QPB2|LRP5L;PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;ENSG00000070018|ENST00000261349|LRP6 LRP6-PTPRO|1|fusion;nc|ENSG00000290796|A4QPB2-2|LRP5L;PPP6R3-LRP5|3|fusion;ENSG00000070018|ENST00000261349|LRP6 PPP6R3-LRP5|3|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.282192 1026.54983 0.86264 0.00044364 0.42592 0.00021904 1.2886 0.00066269 514.2823531754722 80.182 0.67985 79.693 79.354 80.034 -0.48933 -0.012171 -3.8154E-05 NaN 16.149 66 26 3 NaN NaN NaN NaN 0 NaN NaN 0 2959400 58999 16693;1015;15979;16638 39429 40312 0.037617603058379245 SLHDAIMIV 9 Oxidation (M) _SLHDAIM(Oxidation (M))IV_ SLHDAIM(1)IV SLHDAIM(74)IV 0 0 1 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7686767578125 2 507.76806 1013.52157 0.66823 0.0003393 -1.0229 -0.00051939 -0.35467 -0.00018009 507.7675607663948 53.484 0.40147 53.484 53.304 53.705 0 38 18 3 0 0 0 0.012148 2 29598 29598;29722 74.423 38.379 1 18787000 59000 4726 39430 40313 68715;68716 68715 857 0.015346943342706254 SLHDAIMIV 9 Oxidation (M) _SLHDAIM(Oxidation (M))IV_ SLHDAIM(1)IV SLHDAIM(74)IV 0 0 1 ENSG00000135624|ENST00000258091|CCT7;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;nc|ENSG00000135624|Q99832-2|CCT7 ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.76708984375 2 507.76806 1013.52157 0.05006 2.5419E-05 -0.16653 -8.4558E-05 -0.11647 -5.9139E-05 507.76799392732863 53.92 0.36177 53.453 53.285 53.646 -0.46664 53 17 4 0 0 0 0.012148 2 29140 29140;29243 74.423 38.857 1 20128000 59001 4726 39430 40313 68717;68718 68717 857 0.015346943342706254 SLHEFLVNL 9 Unmodified _SLHEFLVNL_ 0 0 0 nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.29638671875 2 536.295299 1070.57605 0.20026 0.0001074 1.434 0.00076907 1.6343 0.00087647 536.2959683510776 76.184 0.28635 75.704 75.549 75.835 -0.47945 25 11 3 0 0 0 0.070838 1 41734 41734 39.957 24.11 1 899480 59002 3408 39431 40314 68719 68719 0.04358029477339187 SLHEFLVNL 9 Unmodified _SLHEFLVNL_ 0 0 0 nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2962036132812 2 536.295299 1070.57605 0.20919 0.00011219 1.2722 0.00068227 1.4814 0.00079446 536.2958404224679 75.691 0.35054 75.739 75.537 75.888 0.047951 34 15 3 0 0 0 0.026094 1 41705 41705 57.471 23.369 1 3953200 59003 3408 39431 40314 68720 68720 0.04358029477339187 SLHEFLVNL 9 Unmodified _SLHEFLVNL_ 0 0 0 nc|ENSG00000119004|Q6UW02-2|CYP20A1;ENSG00000119004|ENST00000356079|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 nc|ENSG00000119004|Q6UW02-2|CYP20A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.295654296875 2 536.295299 1070.57605 1.105 0.0005926 -1.7959 -0.00096311 -0.69087 -0.00037051 536.2942838884111 97.05 0.3056 90.874 90.722 91.028 -6.1757 28 17 2 0 0 0 0.024882 1 64307 64307 58.679 18.44 1 23755000 59004 3408 39431 40314 68721 68721 0.04358029477339187 SLHEGFYM 8 Unmodified _SLHEGFYM_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7628173828125 2 492.218203 982.421853 -0.29665 -0.00014602 0.92113 0.0004534 0.62448 0.00030738 492.21871459821074 48.463 0.32418 48.463 48.231 48.555 0 29 15 3 0 0 0 8.7369 1 26488 26488 13.508 8.7519 1 3515100 + 59005 29660 39432 40315 68722 68722 -0.07006123279688836 SLHEGFYM 8 Unmodified _SLHEGFYM_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 492.218203 982.421853 0.47128 0.00023197 -1.5816 -0.00077849 -1.1103 -0.00054652 492.21803374232104 48.72 0.15831 48.348 48.322 48.48 -0.37172 -0.057353 -0.00074618 NaN 13.508 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3979300 + 59006 29660 39432 40315 -0.07006123279688836 SLHFLIVHL 9 Unmodified _SLHFLIVHL_ 0 0 0 ENSG00000137962|ENST00000260526|ARHGAP29;ENST00000482481.1_1_1:94643162-94655618:-|nuORF ENSG00000137962|ENST00000260526|ARHGAP29 ENSG00000137962|ENST00000260526|ARHGAP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2187805175781 3 360.218443 1077.6335 0.12156 4.3787E-05 1.2529 0.00045133 1.3745 0.00049512 360.21895141194335 75.671 0.25734 75.719 75.515 75.773 0.047943 20 11 2 0 0 0 0.47846 1 41733 41733 8.7454 3.4485 1 1185100 59007 4994 39433 40316 68723 68723 0.0977891647355591 SLHGDLAPY 9 Unmodified _SLHGDLAPY_ 0 0 0 REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF REV__ENST00000463014.1_1_7:44246980-44247830:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7435302734375 2 486.742899 971.471246 -0.11259 -5.4803E-05 0.13624 6.6314E-05 0.02365 1.1511E-05 486.7429895376513 32.943 0.38907 32.784 32.57 32.959 -0.15918 28 15 2 0 0 0 0.39863 1 17243 17243 12.532 0.89125 1 2654600 + 59008 18524 39434 40317 68724 68724 -0.015630919992531744 SLHGRCDAVK 10 Unmodified _SLHGRCDAVK_ 0 0 0 REV__nc|ENSG00000120868|O14727-3|APAF1 REV__nc|ENSG00000120868|O14727-3|APAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.77734375 2 543.279657 1084.54476 -0.60631 -0.0003294 -0.26185 -0.00014226 -0.86816 -0.00047165 543.2795408093774 55.562 0.53712 55.562 55.218 55.756 0 87 37 4 0 0 0 0.64628 1 30731 30731 8.7454 0.15213 1 140360000 + 59009 19266 39435 40318 68725 68725 0.0058713317157526035 SLHIFNAI 8 Unmodified _SLHIFNAI_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;ENST00000376460.5_1_13:99446882-99448462:-|nuORF ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7589721679688 2 457.758352 913.502152 1.0662 0.00048806 -0.54341 -0.00024875 0.52278 0.00023931 457.75795501897466 48.399 0.36134 43.166 42.94 43.302 -5.2339 40 21 3 0 0 0 0.42423 1 30055 30055 42.095 9.7891 1 31292000 59010 1489 39436 40319 68726 68726 0.04194106105649098 SLHIWSLT 8 Unmodified _SLHIWSLT_ 0 0 0 nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8 nc|ENSG00000164756|Q8IWU4-2|SLC30A8 nc|ENSG00000164756|Q8IWU4-2|SLC30A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7666015625 2 478.763635 955.512717 0.22358 0.00010704 0.34824 0.00016672 0.57182 0.00027377 478.7635596877944 69.781 0.43967 69.781 69.534 69.974 0 73 23 5 0 0 0 0.75262 1 38752 38752 12.532 2.3482 1 29804000 59011 7242 39437 40320 68727 68727 0.03318088760090632 SLHLLKPF 8 Unmodified _SLHLLKPF_ 0 0 0 REV__ENSG00000110756|ENST00000349215|HPS5 REV__ENSG00000110756|ENST00000349215|HPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7927856445312 2 477.792195 953.569838 0.30359 0.00014505 0.23519 0.00011237 0.53878 0.00025742 477.7922979085986 61.14 0.29377 61.096 60.906 61.2 -0.04351 37 14 3 0 0 0 0.61462 1 33317 33317 24.674 0 1 31976000 + 59012 18720 39438 40321 68728 68728 0.09119556036466747 SLHLLKPF 8 Unmodified _SLHLLKPF_ 0 0 0 REV__ENSG00000110756|ENST00000349215|HPS5 REV__ENSG00000110756|ENST00000349215|HPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7926330566406 2 477.792195 953.569838 1.0298 0.00049202 0.3312 0.00015824 1.361 0.00065026 477.79226947222696 94.9 0.33914 88.724 88.573 88.912 -6.1757 57 18 4 0 0 0 0.46494 2 62815 62815;62931 38.151 7.9264 1 91012000 + 59013 18720 39438 40321 68729;68730 68729 0.09119556036466747 SLHLQQVSLSQ 11 Unmodified _SLHLQQVSLSQ_ 0 0 0 nc|ENSG00000167920|Q8N816-2|KRT10-AS1;nc|ENSG00000167920|Q8N816|KRT10-AS1 nc|ENSG00000167920|Q8N816-2|KRT10-AS1 nc|ENSG00000167920|Q8N816-2|KRT10-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8940124511719 3 413.894577 1238.6619 -0.076532 -3.1676E-05 1.0466 0.00043318 0.97006 0.0004015 413.89483670224496 18.257 0.16708 18.263 18.188 18.355 0.0060463 37 16 3 0 0 0 0.46131 1 9224 9224 11.065 0.53781 1 14351000 59014 16364 39439 40322 68731 68731 0.05211569592188425 SLHLQQVSLSQ 11 Unmodified _SLHLQQVSLSQ_ 0 0 0 nc|ENSG00000167920|Q8N816-2|KRT10-AS1;nc|ENSG00000167920|Q8N816|KRT10-AS1 nc|ENSG00000167920|Q8N816-2|KRT10-AS1 nc|ENSG00000167920|Q8N816-2|KRT10-AS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.894577 1238.6619 -0.076532 -3.1676E-05 1.0466 0.00043318 0.97006 0.0004015 413.89483670224496 18.257 0.16708 18.263 18.188 18.355 0.0060463 0 0 NaN 11.065 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 14351000 59015 16364 39439 40322 0.05211569592188425 SLHLQSQF 8 Unmodified _SLHLQSQF_ 0 0 0 ENST00000354386.10_1_14:58955358-58955499:+|nuORF ENST00000354386.10_1_14:58955358-58955499:+|nuORF ENST00000354386.10_1_14:58955358-58955499:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2511901855469 2 480.250892 958.48723 -0.14512 -6.9692E-05 0.90942 0.00043675 0.76431 0.00036706 480.2513790713166 34.013 0.25412 33.821 33.718 33.972 -0.19131 20 9 3 0 0 0 0.80676 1 17823 17823 2.5775 0 1 1833400 59016 12064 39440 40323 68732 68732 0.006326142376678945 SLHLSPPS 8 Unmodified _SLHLSPPS_ 0 0 0 ENST00000564440.5_1_15:72491410-72491662:-|nuORF ENST00000564440.5_1_15:72491410-72491662:-|nuORF ENST00000564440.5_1_15:72491410-72491662:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.447021484375 1 837.446494 836.439217 0.24919 0.00020868 -1.5486 -0.0012968 -1.2994 -0.0010882 837.4469008200464 49.225 0.18866 49.225 49.128 49.316 0 13 8 2 0 0 0 0.57045 1 27063 27063 28.487 0 1 1006800 59017 15384 39441 40324 68733 68733 0.014455403176157233 SLHMMKISY 9 Unmodified _SLHMMKISY_ 0 0 0 ENSG00000158623|ENST00000425248|COPG2;nc|ENSG00000158623|Q9UBF2-2|COPG2 ENSG00000158623|ENST00000425248|COPG2 ENSG00000158623|ENST00000425248|COPG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2791748046875 2 555.277738 1108.54092 NaN NaN NaN NaN NaN NaN NaN 64.816 1 64.816 64.316 65.316 0 0 0 0 0.6032 1 36152 36152 12.532 0 1 59018 6600 39442 40325 68734 68734 -0.00900672646480416 SLHPFTHF 8 Unmodified _SLHPFTHF_ 0 0 0 REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|93|3|anti-sense REV__THE1D-int_dup348|chr2:240633210-240634743:+|2.066086417774492|0.4818669853647762|2.1|177.0|93|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7501220703125 2 493.248152 984.481751 -0.36933 -0.00018217 0.64537 0.00031833 0.27604 0.00013616 493.2486227669989 18.73 0.086748 18.753 18.704 18.79 0.023106 14 10 2 0 0 0 0.72953 1 9415 9415 14.582 0 1 283450 + 59019 30117 39443 40326 68735 68735 -0.01111064554152108 SLHPISLVL 9 Unmodified _SLHPISLVL_ 0 0 0 ENST00000494283.1_1_14:50520012-50520198:+|nuORF ENST00000494283.1_1_14:50520012-50520198:+|nuORF ENST00000494283.1_1_14:50520012-50520198:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.8037414550781 2 489.80276 977.590967 0.61688 0.00030215 0.51839 0.00025391 1.1353 0.00055606 489.8030620042758 78.388 0.23029 78.44 78.302 78.532 0.052444 13 9 2 0 0 0 0.2143 1 43308 43308 21.747 0 1 1253100 59020 14330 39444 40327 68736 68736 0.1012752134532775 SLHPSWLLL 9 Unmodified _SLHPSWLLL_ 0 0 0 ENST00000398073.6_1_12:58216199-58216532:-|nuORF ENST00000398073.6_1_12:58216199-58216532:-|nuORF ENST00000398073.6_1_12:58216199-58216532:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3086547851562 2 533.30821 1064.60187 0.12279 6.5485E-05 0.64265 0.00034273 0.76544 0.00040822 533.3084635790599 93.372 1.0505 87.196 86.534 87.585 -6.1757 226 71 4 0 0 0 0.095405 1 61953 61953 34.102 5.6156 1 1018399999.9999999 59021 12839 39445 40328 68737 68737 0.07214923719629951 SLHRCCHH 8 Unmodified _SLHRCCHH_ 0 0 0 ENST00000475243.5_1_20:56964466-56993336:+|nuORF ENST00000475243.5_1_20:56964466-56993336:+|nuORF ENST00000475243.5_1_20:56964466-56993336:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.717041015625 2 496.718713 991.422873 NaN NaN NaN NaN NaN NaN NaN 0.052381 1 0.030316 -0.46968 0.53032 -0.022065 0 0 0 0.97444 1 27 27 0 0 1 59022 13958 39446 40329 68738 68738 -0.07318187391786068 SLHRISEVF 9 Unmodified _SLHRISEVF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.2012634277344 3 363.201341 1086.58219 -0.76403 -0.0002775 0.83047 0.00030163 0.066444 2.4133E-05 363.2015712916148 28.331 0.2895 28.331 28.149 28.438 0 34 15 3 0 0 0 0.45045 1 14602 14602 14.405 10.529 1 7955000 59023 9795 39447 40330 68739 68739 0.042365477088424086 SLHSFVAAA 9 Unmodified _SLHSFVAAA_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7402648925781 2 451.74016 901.465767 0.39339 0.00017771 -0.31384 -0.00014177 0.079553 3.5937E-05 451.7401849119667 40.352 0.23059 40.054 39.923 40.154 -0.29716 15 10 2 0 0 0 0.023164 1 21339 21339 60.39 22.238 1 1520300 59024 16412 39448 40331 68740 68740 0.011092292089415423 SLHVTLEEEL 10 Unmodified _SLHVTLEEEL_ 0 0 0 REV__ENST00000465966.4_1_6:30861134-30864801:+|nuORF REV__ENST00000465966.4_1_6:30861134-30864801:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.2239074707031 3 390.539799 1168.59757 1.6343 0.00063825 -2.5188 -0.00098369 -0.88452 -0.00034544 390.536802604672 35.874 0.40538 31.681 31.493 31.899 -4.1928 55 25 3 0 0 0 0.22949 1 20897 20897 15.739 6.1946 1 9581600 + 59025 24184 39449 40332 68741 68741 0.02001369715412693 SLHYPRPL 8 Unmodified _SLHYPRPL_ 0 0 0 ENST00000246015.8_2_20:1099282-1099507:+|nuORF ENST00000246015.8_2_20:1099282-1099507:+|nuORF ENST00000246015.8_2_20:1099282-1099507:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.778076171875 2 491.777077 981.5396 0.63633 0.00031293 1.495 0.0007352 2.1313 0.0010481 491.77784478206183 71.085 0.27046 70.608 70.434 70.705 -0.47735 23 11 3 0 0 0 0.80143 1 38891 38891 5.7604 0 1 1006700 59026 11120 39450 40333 68742 68742 0.04809197371275786 SLHYPTWCL 9 Unmodified _SLHYPTWCL_ 0 0 0 REV__nc|ENSG00000288611|P48145|NPBWR1 REV__nc|ENSG00000288611|P48145|NPBWR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8484191894531 3 373.84791 1118.5219 0.29566 0.00011053 1.53 0.00057198 1.8256 0.00068251 373.84878998636185 70.645 0.16866 70.168 70.099 70.268 -0.47735 25 11 3 0 0 0 0.21404 1 38616 38616 5.2969 1.3525 1 3410000 + 59027 30022 39451 40334 68743 68743 -0.032618859459034866 SLIASVLVS 9 Unmodified _SLIASVLVS_ 0 0 0 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 888.5390625 1 888.54006 887.532783 2.1139 0.0018783 -0.034408 -3.0573E-05 2.0795 0.0018477 888.539695806136 93.598 0.37142 93.621 93.448 93.819 0.02298 30 14 3 0 0 0 0.012148 1 51990 51990 74.423 0 1 9064900 + 59028 20451 39452 40335 68744 68744 0.08451839700057917 SLIASVLVS 9 Unmodified _SLIASVLVS_ 0 0 0 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 888.5402221679688 1 888.54006 887.532783 0.44422 0.00039471 0.12227 0.00010864 0.56649 0.00050335 888.5401171435248 100.37 0.16703 94.194 94.103 94.27 -6.1757 26 10 3 0 0 0 0.012148 1 67072 67072 74.423 3.2892 1 130900000 + 59029 20451 39452 40335 68745 68745 0.08451839700057917 SLIASVLVSL 10 Unmodified _SLIASVLVSL_ 0 0 0 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 REV__nc|ENSG00000140157|Q8N8Q9-2|NIPA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.7779846191406 2 501.3157 1000.61685 1.3714 0.0006875 -0.98863 -0.00049561 0.38277 0.00019189 501.31514031533396 62.41 0.36035 56.235 56.038 56.398 -6.1757 34 19 2 0 0 0 0.19561 1 40364 40364 30.637 1.555 1 26075000 + 59030 20451 39453 40336 68746 68746 0.11656370796947613 SLIEIIPDF 9 Unmodified _SLIEIIPDF_ 0 0 0 ENSG00000185149|ENST00000329476|NPY2R ENSG00000185149|ENST00000329476|NPY2R ENSG00000185149|ENST00000329476|NPY2R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.3243408203125 2 523.792058 1045.56956 1.0476 0.00054872 -1.5875 -0.00083153 -0.53993 -0.00028281 523.7915194268735 99.323 0.21516 93.148 93.028 93.243 -6.1757 18 13 2 0 0 0 0.07019 1 66085 66085 28.487 0 1 68892000 59031 9337 39454 40337 68747 68747 0.04860091525938515 SLIEYCIEL 9 Carbamidomethyl (C) _SLIEYC(Carbamidomethyl (C))IEL_ SLIEYC(1)IEL SLIEYC(57)IEL 0 1 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2864379882812 2 570.286282 1138.55801 1.4025 0.00079981 4.2668 0.0024333 5.6693 0.0032331 570.7911474450261 96.695 1.0492 90.52 90.136 91.186 -6.1757 120 61 2 0 0 0 0.026094 2 64202 64079;64202 57.471 23.369 1 79818000 59032 3945 39455 40338 68748;68749 68749 397 -0.005724735597141262 SLIFSQVY 8 Unmodified _SLIFSQVY_ 0 0 0 ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000522645.5_1_8:59543991-59572190:-|nuORF ENSG00000035681|ENST00000038176|NSMAF ENSG00000035681|ENST00000038176|NSMAF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.2794799804688 2 478.758018 955.501483 1.1645 0.00055752 0.83359 0.00039909 1.9981 0.00095661 478.7582508942235 61.658 0.27 55.482 55.367 55.637 -6.1757 17 13 2 0 0 0 8.7369 1 39756 39756 11.64 0 1 16917000 59033 616 39456 40339 68750 68750 0.021952666659558417 SLIGFEVLL 9 Unmodified _SLIGFEVLL_ 0 0 0 REV__ENSG00000134109|ENST00000256497|EDEM1 REV__ENSG00000134109|ENST00000256497|EDEM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.587646484375 1 990.58701 989.579734 0.63386 0.00062789 -0.44783 -0.00044361 0.18603 0.00018428 990.5863990022845 101.71 0.11292 95.535 95.461 95.574 -6.1757 9 5 2 0 0 0 0.026094 1 68268 68268 57.471 3.8958 1 31046000 + 59034 19952 39457 40340 68751 68751 0.0845269925117691 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2900390625 2 491.290017 980.565481 0.25269 0.00012414 0.16667 8.1885E-05 0.41936 0.00020603 491.2894689474103 58.418 0.37281 58.418 58.233 58.606 0 29 14 3 0 0 0 0.012668 1 32511 32511 72.968 27.268 1 3895000 59035 5029 39458 40341 68752 68752 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2898559570312 2 491.290017 980.565481 0.45301 0.00022256 0.018654 9.1644E-06 0.47167 0.00023172 491.28983088107816 58.793 0.63594 58.302 57.943 58.579 -0.49079 99 30 6 0 0 0 0.0047067 2 31923 31923;32023 118.07 42.308 1 130610000 59036 5029 39458 40341 68753;68754 68753 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2900695800781 2 491.290017 980.565481 0.94365 0.00046361 -0.37257 -0.00018304 0.57108 0.00028057 491.2897767103898 58.444 0.37005 58.383 58.156 58.526 -0.060719 60 18 4 0 0 0 0.0061223 2 31754 31754;31854 114.2 38.645 1 65717000 59037 5029 39458 40341 68755;68756 68755 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2908325195312 2 491.290017 980.565481 1.3215 0.00064923 0.21698 0.0001066 1.5385 0.00075583 491.290125815533 64.535 1.0358 58.359 58.053 59.089 -6.1757 144 57 5 0 0 0 0.0082548 3 41793 41793;41924;42246 96.367 35.009 1 202230000 59038 5029 39458 40341 68757;68758;68759 68757 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2915344238281 2 491.290017 980.565481 0.81092 0.0003984 0.40551 0.00019922 1.2164 0.00059762 491.29013087874813 73.307 1.0044 67.131 66.259 67.263 -6.1757 80 50 2 0 0 0 0.0082475 4 47610 47610;47737;47855;47973 96.367 37.688 1 24662000 59039 5029 39458 40341 68760;68761;68762;68763 68760 0.07442046822893644 SLIGHLQTL 9 Unmodified _SLIGHLQTL_ 0 0 0 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 ENSG00000138166|ENST00000369583|DUSP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2902526855469 2 491.290017 980.565481 0.93062 0.0004572 -0.17351 -8.5245E-05 0.75711 0.00037196 491.289788344737 74.36 1.8211 68.184 67.263 69.084 -6.1757 148 94 2 0 0 0 0.00044362 9 48796 48092;48203;48319;48434;48547;48670;48796;48923;49060 145.13 56.226 1 32928000 59040 5029 39458 40341 68764;68765;68766;68767;68768;68769;68770;68771;68772 68770 0.07442046822893644 SLIGLSGVLT 10 Unmodified _SLIGLSGVLT_ 0 0 0 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 ENSG00000010327|ENST00000321725|STAB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2923583984375 2 480.292225 958.569897 0.58243 0.00027974 -0.62205 -0.00029876 -0.039619 -1.9029E-05 480.29174366025165 77.436 0.43729 71.26 70.955 71.392 -6.1757 34 25 2 0 0 0 0.20962 1 50660 50660 32.786 2.1491 1 9200700 59041 422 39459 40342 68773 68773 0.08895511245816579 SLIHELVGQ 9 Unmodified _SLIHELVGQ_ 0 0 0 REV__ENSG00000101003|ENST00000262460|GINS1 REV__ENSG00000101003|ENST00000262460|GINS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2809143066406 2 498.279649 994.544745 0.095575 4.7623E-05 -0.49926 -0.00024877 -0.40368 -0.00020115 498.2796053721478 60.021 0.23787 59.53 59.392 59.63 -0.49079 21 11 2 0 0 0 0.03568 1 32647 32647 52.268 24.64 1 4416900 + 59042 18124 39460 40343 68774 68774 0.04725456443236453 SLIHGLWNL 9 Unmodified _SLIHGLWNL_ 0 0 0 nc|ENSG00000139636|Q6UX01-3|LMBR1L;nc|ENSG00000139636|Q6UX01-4|LMBR1L;nc|ENSG00000139636|Q6UX01-2|LMBR1L;ENSG00000139636|ENST00000267102|LMBR1L;ENST00000547670.5_1_12:49494396-49503620:-|nuORF;nc|ENSG00000139636|Q6UX01-5|LMBR1L;ENST00000550867.5_1_12:49494935-49504419:-|nuORF;ENST00000454132.5_1_7:156572396-156619437:-|nuORF;nc|ENSG00000105983|Q8WVP7-2|LMBR1;ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 nc|ENSG00000139636|Q6UX01-3|LMBR1L;ENSG00000105983|ENST00000353442|LMBR1 nc|ENSG00000139636|Q6UX01-3|LMBR1L MSMS AL20221201_MKP_PDAC_01 4 526.7982177734375 2 526.798009 1051.58147 NaN NaN NaN NaN NaN NaN NaN 98.363 1 92.187 91.687 92.687 -6.1757 0 0 0 0.04157 1 65237 65237 61.357 10.502 1 59043 5173;2386 39461 40344 68775 68775 0.05773753059793307 SLIKHKIML 9 Unmodified _SLIKHKIML_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.0645446777344 3 361.563334 1081.66817 1.9832 0.00071706 -0.18787 -6.7928E-05 1.7953 0.00064913 361.56313932179705 88.181 0.29883 82.006 81.869 82.168 -6.1757 26 16 2 0 0 0 0.19111 1 58131 58131 16.149 3.9084 1 9799200 59044 3048 39462 40345 68776 68776 0.1306041628999992 SLIKQIPRI 9 Unmodified _SLIKQIPRI_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.5692443847656 3 356.569365 1066.68626 0.75525 0.0002693 -0.27429 -9.7802E-05 0.48096 0.0001715 356.5693022141106 49.586 0.41292 49.537 49.35 49.763 -0.048824 45 20 3 0 0 0 0.07916 1 26793 26793 28.495 9.7733 1 5918300 59045 10143 39463 40346 68777 68777 0.1555887453635023 SLIKQIPRI 9 Unmodified _SLIKQIPRI_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.805908203125 2 534.350409 1066.68626 0.90759 0.00048497 -0.61031 -0.00032612 0.29728 0.00015885 534.3492391365877 49.594 0.21233 49.545 49.471 49.683 -0.048828 12 10 2 0 0 0 0.20139 1 26831 26831 10.824 1.4408 1 991090 59046 10143 39463 40346 68778 68778 0.1555887453635023 SLIKQIPRI 9 Unmodified _SLIKQIPRI_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5687866210938 3 356.569365 1066.68626 1.2225 0.00043589 -0.10861 -3.8728E-05 1.1138 0.00039716 356.56921778173887 77.436 0.56333 71.26 70.955 71.518 -6.1757 41 32 2 0 0 0 0.018301 1 50593 50593 51.415 27.625 1 8065700 59047 10143 39463 40346 68779 68779 0.1555887453635023 SLIKYAFIL 9 Unmodified _SLIKYAFIL_ 0 0 0 ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF ENST00000479187.5_1_12:40692272-40758932:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3289184570312 2 534.328611 1066.64267 0.27257 0.00014564 0.83232 0.00044473 1.1049 0.00059037 534.329013095167 74.705 0.35191 74.751 74.547 74.899 0.045967 35 15 3 0 0 0 0.34999 1 41243 41243 14.838 0 1 2276800 59048 14031 39464 40347 68780 68780 0.1120126503924439 SLILCKGQRE 10 Unmodified _SLILCKGQRE_ 0 0 0 REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|119|3|anti-sense REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|119|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8174438476562 2 573.818615 1145.62268 0.71558 0.00041061 -1.749 -0.0010036 -1.0335 -0.00059302 573.8174520114485 18.161 0.1345 15.539 15.504 15.638 -2.6215 17 13 2 0 0 0 0.64628 1 9568 9568 8.7454 2.0222 1 1771200 + 59049 29407 39465 40348 68781 68781 0.05569146036964412 SLIMFKKRL 9 Unmodified _SLIMFKKRL_ 0 0 0 REV__ENST00000338230.3_2_19:53270830-53270923:-|nuORF REV__ENST00000338230.3_2_19:53270830-53270923:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2386169433594 3 379.23885 1134.69472 0.91207 0.00034589 -1.3733 -0.00052081 -0.46123 -0.00017492 379.2381365173155 63.921 0.58616 63.91 63.49 64.077 -0.010532 93 28 4 0 0 0 0.60664 1 34936 34936 0.96228 0.96228 1 16127000 + 59050 25670 39466 40349 68782 68782 0.13276105181330422 SLIMFKKRL 9 Unmodified _SLIMFKKRL_ 0 0 0 REV__ENST00000338230.3_2_19:53270830-53270923:-|nuORF REV__ENST00000338230.3_2_19:53270830-53270923:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.23885 1134.69472 0.63253 0.00023988 -1.604 -0.00060832 -0.97152 -0.00036844 379.238089497437 64.496 0.51064 64.011 63.592 64.102 -0.48512 0.050187 -0.00012981 NaN 0.96228 36 23 2 NaN NaN NaN NaN 0 NaN NaN 0 910260 + 59051 25670 39466 40349 0.13276105181330422 SLINVGLISV 10 Unmodified _SLINVGLISV_ 0 0 0 nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF nc|ENSG00000136938|Q92688-2|ANP32B nc|ENSG00000136938|Q92688-2|ANP32B MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8135986328125 2 507.813325 1013.6121 1.115 0.00056623 -0.25442 -0.0001292 0.86061 0.00043703 507.8131130768216 100.24 0.16493 94.062 93.957 94.122 -6.1757 28 9 4 0 0 0 0.012821 1 66947 66947 82.529 19.957 1 122220000 59052 4886 39467 40350 68783 68783 0.1058348665419544 SLINWTTY 8 Unmodified _SLINWTTY_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2505187988281 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 55.869 1 55.869 55.369 56.369 0 0 0 0 0.62748 1 31052 31052 32.305 0 1 + 59053 24064 39468 40351 68784 68784 -0.006739213394325816 SLIPCTQRSYF 11 Unmodified _SLIPCTQRSYF_ 0 0 0 REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.828125 2 657.82918 1313.64381 0.80742 0.00053114 -0.10779 -7.0904E-05 0.69963 0.00046024 657.8287922721161 68.209 0.28976 68.234 68.088 68.378 0.025146 35 14 4 0 0 0 0.59689 1 37459 37459 11.495 0.67078 1 6513100 + 59054 25591 39469 40352 68785 68785 -0.00046888654173926625 SLIPCTQRSYF 11 Unmodified _SLIPCTQRSYF_ 0 0 0 REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF REV__ENST00000330387.10_1_7:137564531-137564783:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.830078125 2 657.82918 1313.64381 -0.072773 -4.7872E-05 2.2618 0.0014878 2.189 0.00144 657.8307602384831 84.779 0.59062 78.604 78.333 78.924 -6.1757 57 34 2 0 0 0 0.18636 1 55792 55792 32.786 8.9959 1 16950000 + 59055 25591 39469 40352 68786 68786 -0.00046888654173926625 SLIPLQSGSF 10 Unmodified _SLIPLQSGSF_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.787109375 2 524.787307 1047.56006 0.5078 0.00026649 -0.1511 -7.9295E-05 0.3567 0.00018719 524.7871685200665 52.668 0.32776 52.668 52.508 52.836 0 49 14 5 0 0 0 0.67755 1 29241 29241 9.3831 1.473 1 52648000 59056 8400 39470 40353 68787 68787 0.03818323240443533 SLIPTSPQV 9 Unmodified _SLIPTSPQV_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2689514160156 2 471.26875 940.522947 0.35551 0.00016754 -0.030717 -1.4476E-05 0.32479 0.00015307 471.2687633797769 59.353 0.32175 58.863 58.665 58.987 -0.49079 28 14 3 0 0 0 0.028475 1 32267 32267 56.177 6.244 1 2572000 59057 8814 39471 40354 68788 68788 0.05030651694664812 SLIPTSPQV 9 Unmodified _SLIPTSPQV_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2685241699219 2 471.26875 940.522947 0.5732 0.00027013 -0.5126 -0.00024157 0.060606 2.8562E-05 471.26857751058725 66.955 0.31615 60.779 60.646 60.962 -6.1757 22 17 2 0 0 0 0.010611 1 43561 43561 78.728 0.57865 1 15085000 59058 8814 39471 40354 68789 68789 0.05030651694664812 SLIQHLEEI 9 Unmodified _SLIQHLEEI_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2977294921875 2 541.298039 1080.58152 0.17834 9.6537E-05 -0.48872 -0.00026455 -0.31038 -0.00016801 541.2976786094026 64.569 0.35893 64.569 64.386 64.745 0 57 17 4 0 0 0 0.016848 2 36053 35947;36053 80.676 13.193 1 25369000 59059 8967 39472 40355 68790;68791 68791 0.04445708269145143 SLIQHLEEI 9 Unmodified _SLIQHLEEI_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2984619140625 2 541.298039 1080.58152 0.20374 0.00011029 0.6129 0.00033176 0.81665 0.00044205 541.2983816518259 65.003 0.36807 64.519 64.295 64.663 -0.48428 39 16 3 0 0 0 0.20389 1 35522 35522 29.841 0.759 1 5678700 59060 8967 39472 40355 68792 68792 0.04445708269145143 SLIQHLEEI 9 Unmodified _SLIQHLEEI_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2994995117188 2 541.298039 1080.58152 0.81284 0.00043999 1.0632 0.00057548 1.876 0.0010155 541.2982933785537 91.53 0.69228 85.354 84.956 85.648 -6.1757 115 38 4 0 0 0 0.033466 2 60525 60525;60650 65.474 9.2966 1 49298000 59061 8967 39472 40355 68793;68794 68793 0.04445708269145143 SLIQYWRK 8 Unmodified _SLIQYWRK_ 0 0 0 REV__ENST00000312561.8_2_12:32138111-32138183:+|nuORF REV__ENST00000312561.8_2_12:32138111-32138183:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3102416992188 2 547.311284 1092.60801 NaN NaN NaN NaN NaN NaN NaN 72.784 1 72.784 72.284 73.284 0 0 0 0 0.97444 1 40525 40525 5.2307 0 1 + 59062 25433 39473 40356 68795 68795 0.06541441951117122 SLIREDGRL 9 Unmodified _SLIREDGRL_ 0 0 0 REV__ENSG00000100604|ENST00000216492|CHGA REV__ENSG00000100604|ENST00000216492|CHGA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 529.2603759765625 2 529.80128 1057.58801 0.82024 0.00043457 -0.35919 -0.0001903 0.46105 0.00024427 530.302322650531 36.697 0.28902 32.413 32.324 32.613 -4.2835 23 17 2 0 0 0 0.19496 1 21471 21471 5.7319 0 1 4985900 + 59063 18090 39474 40357 68796 68796 0.06151646220519069 SLIRIVPVV 9 Unmodified _SLIRIVPVV_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3347778320312 2 498.334227 994.653902 0.36677 0.00018277 1.4016 0.00069849 1.7684 0.00088126 498.33484639831494 74.374 0.20036 74.418 74.319 74.52 0.043983 15 8 2 0 0 0 0.2546 1 41007 41007 19.362 2.249 1 1405000 59064 5571 39475 40358 68797 68797 0.15636087133373167 SLIRKKFRMM 10 Unmodified _SLIRKKFRMM_ 0 0 0 nc|ENSG00000133302|Q9BQI6-2|SLF1 nc|ENSG00000133302|Q9BQI6-2|SLF1 nc|ENSG00000133302|Q9BQI6-2|SLF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2580261230469 3 437.258027 1308.75225 1.3765 0.00060191 -2.0363 -0.00089038 -0.65974 -0.00028848 437.25687836942825 100.53 0.27142 100.49 100.29 100.56 -0.04216 15 9 2 0 0 0 0.72247 1 55875 55875 0.13989 0.056541 1 3735900 59065 16198 39476 40359 68798 68798 0.11022624115230428 SLIRNLEQL 9 Unmodified _SLIRNLEQL_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000601061.1_1_19:7710099-7712134:+|nuORF;ENST00000593854.5_1_19:7709481-7711320:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.3207397460938 2 543.319306 1084.62406 -0.025497 -1.3853E-05 0.89543 0.00048651 0.86994 0.00047265 543.3198758570509 61.729 0.29268 61.242 61.052 61.345 -0.48764 33 13 3 0 0 0 0.065007 2 33576 33576;33679 51.415 9.5756 1 7343400 59066 1199 39477 40360 68799;68800 68799 0.08513103397376653 SLITRLLEV 9 Unmodified _SLITRLLEV_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.328125 2 522.326599 1042.63865 0.39552 0.00020659 1.5668 0.00081838 1.9623 0.001025 522.3274732228916 86.077 0.30637 85.574 85.393 85.699 -0.50318 25 11 3 0 0 0 0.11005 1 47084 47084 32.037 7.0465 1 981070 59067 10449 39478 40361 68801 68801 0.11903175545512568 SLITRLLEV 9 Unmodified _SLITRLLEV_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3265991210938 2 522.326599 1042.63865 -0.30455 -0.00015907 -0.049551 -2.5882E-05 -0.3541 -0.00018495 522.3267685218451 85.488 0.31062 85.55 85.364 85.674 0.061638 18 11 2 0 0 0 0.022461 1 47287 47287 61.09 15.35 1 27861000 59068 10449 39478 40361 68802 68802 0.11903175545512568 SLITRLLEV 9 Unmodified _SLITRLLEV_ 0 0 0 ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF ENSG00000213639|ENST00000395366|PPP1CB ENSG00000213639|ENST00000395366|PPP1CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3273315429688 2 522.326599 1042.63865 1.4034 0.00073306 -0.57136 -0.00029844 0.83208 0.00043462 522.3265310406468 100.1 0.2653 93.926 93.838 94.103 -6.1757 46 16 4 0 0 0 0.01085 1 66840 66840 78.06 16.459 1 54551000 59069 10449 39478 40361 68803 68803 0.11903175545512568 SLIVFLLMI 9 Unmodified _SLIVFLLMI_ 0 0 0 REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2 REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8278198242188 2 524.827389 1047.64023 0.9008 0.00047277 0.035233 1.8491E-05 0.93604 0.00049126 524.8272627158656 99.174 0.31537 92.998 92.859 93.174 -6.1757 53 18 4 0 0 0 0.40476 1 66083 66083 18.135 18.135 1 321870000 + 59070 21296 39479 40362 68804 68804 0.11831093309933749 SLIWFSSF 8 Unmodified _SLIWFSSF_ 0 0 0 REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF REV__ENST00000367279.8_1_1:202128675-202129107:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2248840332031 2 493.752736 985.490919 0.33483 0.00016532 -3.7902 -0.0018714 -3.4554 -0.0017061 493.7518211065838 67.179 0.39525 67.179 67.064 67.459 0 24 16 2 0 0 0 8.7369 1 37508 37508 9.3474 0.75416 1 654970 + 59071 25978 39480 40363 68805 68805 -0.0024071598846830966 SLIWIRLV 8 Unmodified _SLIWIRLV_ 0 0 0 REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3213806152344 2 500.32112 998.627687 -0.58389 -0.00029213 -1.9735 -0.00098736 -2.5573 -0.0012795 500.3199490654001 102.08 0.43918 102.04 101.85 102.28 -0.045853 33 14 3 0 0 0 0.80722 1 56698 56698 2.3027 0 1 1971100 + 59072 28489 39481 40364 68806 68806 0.12831817961887282 SLIWIRLV 8 Unmodified _SLIWIRLV_ 0 0 0 REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF REV__ENST00000533860.5_1_11:130009456-130013340:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.32112 998.627687 -0.58389 -0.00029213 -1.9735 -0.00098736 -2.5573 -0.0012795 500.3199490654001 102.08 0.43918 102.04 101.85 102.28 -0.045853 0 0 NaN 2.3027 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1971100 + 59073 28489 39481 40364 0.12831817961887282 SLKGQSWTAL 10 Unmodified _SLKGQSWTAL_ 0 0 0 ENST00000530342.2_1_11:67007518-67007740:+|nuORF ENST00000530342.2_1_11:67007518-67007740:+|nuORF ENST00000530342.2_1_11:67007518-67007740:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2052612304688 2 545.798206 1089.58186 0.61152 0.00033377 0.92989 0.00050753 1.5414 0.0008413 545.7988153117374 60.091 0.29133 60.091 59.962 60.254 0 21 12 2 0 0 0 0.23566 1 33477 33477 1.6526 0 1 821900 59074 14889 39482 40365 68807 68807 0.04065127988974382 SLKGRRYKHPK 11 Unmodified _SLKGRRYKHPK_ 0 0 0 REV__ENST00000502732.5_1_1:179076600-179076849:-|nuORF REV__ENST00000502732.5_1_1:179076600-179076849:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2771606445312 3 457.277355 1368.81024 4.4543 0.0020369 -2.4554 -0.0011228 1.9989 0.00091406 457.2759275373453 98.891 0.30165 98.863 98.776 99.077 -0.028282 23 10 3 0 0 0 0.74096 1 54941 54941 0.40827 0.26837 1 2846700 + 59075 28028 39483 40366 68808 68808 0.1405834535653412 SLKIVPGH 8 Unmodified _SLKIVPGH_ 0 0 0 ENSG00000168758|ENST00000305476|SEMA4C;ENST00000467747.1_1_2:97526365-97527817:-|nuORF;ENST00000474420.1_1_2:97526365-97527817:-|nuORF ENSG00000168758|ENST00000305476|SEMA4C ENSG00000168758|ENST00000305476|SEMA4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.760986328125 2 425.760895 849.507237 -0.0066675 -2.8388E-06 0.43907 0.00018694 0.4324 0.0001841 425.76101520489567 51.189 0.25961 51.135 51.007 51.266 -0.053875 29 12 3 0 0 0 0.55032 1 27677 27677 30.225 5.5509 1 5848500 59076 7794 39484 40367 68809 68809 0.07646409968276657 SLKLFYHGF 9 Unmodified _SLKLFYHGF_ 0 0 0 REV__ENSG00000182885|ENST00000333493|ADGRG3 REV__ENSG00000182885|ENST00000333493|ADGRG3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.317138671875 2 556.300384 1110.58622 1.1251 0.00062591 2.2 0.0012238 3.3251 0.0018498 556.300686534579 87.461 0.65308 81.286 81.112 81.765 -6.1757 83 35 4 0 0 0 0.17718 1 57896 57896 10.074 2.1638 1 30336000 + 59077 23304 39485 40368 68810 68810 0.03534637202551494 SLKNFWQI 8 Unmodified _SLKNFWQI_ 0 0 0 REV__nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A REV__nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7874755859375 2 518.284734 1034.55492 -0.011114 -5.7604E-06 0.047538 2.4638E-05 0.036424 1.8878E-05 518.2845534907007 43.759 0.37776 43.449 43.185 43.563 -0.31039 31 17 3 0 0 0 0.61462 1 23191 23191 24.674 2.9272 1 64693000 + 59078 24070 39486 40369 68811 68811 0.03902064168460129 SLKNHNRN 8 Unmodified _SLKNHNRN_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|46|2|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|46|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2733154296875 2 491.762489 981.510425 0.45881 0.00022563 1.2938 0.00063623 1.7526 0.00086185 491.76307269297587 57.617 0.26205 57.617 57.51 57.772 0 21 13 2 0 0 0 8.7369 1 32156 32156 12.532 6.1774 1 9388800 + 59079 29443 39487 40370 68812 68812 0.01893053074979889 SLKNSNDWGS 10 Unmodified _SLKNSNDWGS_ 0 0 0 ENST00000526145.6_2_11:128359343-128360393:-|nuORF ENST00000526145.6_2_11:128359343-128360393:-|nuORF ENST00000526145.6_2_11:128359343-128360393:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3164672851562 2 554.256902 1106.49925 1.4576 0.00080787 2.362 0.0013091 3.8195 0.002117 554.2587623430642 50.277 0.4479 50.228 50.006 50.454 -0.048824 41 21 3 0 0 0 0.23057 1 27279 27279 8.7454 0 1 1030900 59080 14809 39488 40371 68813 68813 -0.049738138098064155 SLKPYTYEFKV 11 Unmodified _SLKPYTYEFKV_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10;ENST00000469521.5_1_21:45509650-45516542:+|nuORF;ENST00000483973.5_1_21:45509395-45516542:+|nuORF ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2701721191406 3 458.914978 1373.7231 0.51735 0.00023742 -2.0847 -0.00095669 -1.5673 -0.00071927 458.91332320050805 39.632 0.12426 39.644 39.592 39.716 0.011452 7 5 2 0 0 0 0.30403 1 21127 21127 2.6312 2.1253 1 385670 59081 6704 39489 40372 68814 68814 0.0511908157156995 SLKRIKAW 8 Unmodified _SLKRIKAW_ 0 0 0 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.9355773925781 2 501.316369 1000.61818 NaN NaN NaN NaN NaN NaN NaN 16.302 1 16.307 15.807 16.807 0.0050564 0 0 0 0.97444 1 8168 8168 0.79363 0 1 + 59082 22039 39490 40373 68815 68815 0.11790049676358194 SLKRKGNKRR 10 Unmodified _SLKRKGNKRR_ 0 0 0 REV__ENST00000373233.7_1_20:40032757-40032964:-|nuORF REV__ENST00000373233.7_1_20:40032757-40032964:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.9336547851562 3 414.9337 1241.77927 NaN NaN NaN NaN NaN NaN NaN 16.073 1 13.516 13.016 14.016 -2.557 0 0 0 0.99008 1 8301 8301 1.7423 0.52744 1 + 59083 26139 39491 40374 68816 68816 0.16805192042284034 SLKTPGTSL 9 Unmodified _SLKTPGTSL_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MSMS AL20221201_MKP_PDAC_01 4 452.2611999511719 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 37.392 1 33.108 32.608 33.608 -4.2835 0 0 0 0.024473 1 21945 21945 72.968 14.289 1 59084 5571 39492 40375 68817 68817 0.05214365177630498 SLKYNSQHNS 10 Unmodified _SLKYNSQHNS_ 0 0 0 REV__ENSG00000137760|ENST00000428149|ALKBH8 REV__ENSG00000137760|ENST00000428149|ALKBH8 MSMS AL20221201_MKP_PDAC_01 4 393.1921691894531 3 393.191393 1176.55235 NaN NaN NaN NaN NaN NaN NaN 102.12 1 95.941 95.441 96.441 -6.1757 0 0 0 0.97784 1 68535 68535 3.0723 2.0008 1 + 59085 20263 39493 40376 68818 68818 -0.02886436027142736 SLLAGPQKIA 10 Unmodified _SLLAGPQKIA_ 0 0 0 ENSG00000167105|ENST00000507382|TMEM92 ENSG00000167105|ENST00000507382|TMEM92 ENSG00000167105|ENST00000507382|TMEM92 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2345275878906 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 70.071 1 69.591 69.091 70.091 -0.47903 0 0 0 0.66657 1 38314 38314 18.146 1.0335 1 59086 7572 39494 40377 68819 68819 0.09834619856985682 SLLASLHTL 9 Unmodified _SLLASLHTL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7851257324219 2 477.784567 953.554582 0.55977 0.00026745 -0.064749 -3.0936E-05 0.49503 0.00023652 477.7846626919033 67.337 0.22628 66.855 66.737 66.963 -0.48218 15 9 2 0 0 0 0.095405 1 36808 36808 34.102 12.356 1 881690 59087 5336 39495 40378 68820 68820 0.07594644448602139 SLLASLHTL 9 Unmodified _SLLASLHTL_ 0 0 0 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 ENSG00000141456|ENST00000572293|PELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7850341796875 2 477.784567 953.554582 0.71952 0.00034378 -1.0544 -0.00050377 -0.33486 -0.00015999 477.784473861659 66.879 0.25417 66.897 66.753 67.007 0.018028 20 11 2 0 0 0 0.042911 1 36724 36724 48.346 6.2513 1 2579000 59088 5336 39495 40378 68821 68821 0.07594644448602139 SLLAWVPY 8 Unmodified _SLLAWVPY_ 0 0 0 ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2645874023438 2 474.763104 947.511654 -0.26187 -0.00012432 0.95506 0.00045343 0.6932 0.0003291 474.76347194944447 36.313 1.1657 36.338 35.864 37.03 0.024971 112 53 4 0 0 0 0.80624 1 19136 19136 2.8892 0 1 11444000 59089 3 39496 40379 68822 68822 0.03579874391175508 SLLAWVPY 8 Unmodified _SLLAWVPY_ 0 0 0 ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant ABCC3|p.C42Y|1|0.19|ENSG00000108846|chr17:50655911-50655911|G/A|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 474.763104 947.511654 0.36525 0.00017341 -0.68353 -0.00032451 -0.31828 -0.00015111 474.76309014561076 36.057 0.11986 36.057 35.975 36.095 0 -0.14056 -0.0012503 NaN 2.8892 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1242400 59090 3 39496 40379 0.03579874391175508 SLLDCTFRL 9 Carbamidomethyl (C) _SLLDC(Carbamidomethyl (C))TFRL_ SLLDC(1)TFRL SLLDC(110)TFRL 0 1 0 ENSG00000180182|ENST00000324817|MED14;MED14|p.N883Tfs*11|1|0.12|ENSG00000180182|chrX:40680096-40680096|T/-|frameshift_variant ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.79248046875 2 562.792066 1123.56958 1.205 0.00067817 -1.2945 -0.00072856 -0.089539 -5.0392E-05 562.7912139720723 92.267 0.8338 86.091 85.53 86.364 -6.1757 114 49 3 0 0 0 0.0074135 4 60884 60755;60884;61004;61143 110.67 66.816 1 58457000 59091 8887 39497 40380 68823;68824;68825;68826 68824 843 0.012737682543047413 SLLDDLHSA 9 Unmodified _SLLDDLHSA_ 0 0 0 ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B ENSG00000162378|ENST00000294353|ZYG11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7450256347656 2 485.745639 969.476725 0.48873 0.0002374 0.20402 9.9102E-05 0.69275 0.0003365 485.74515380142327 54.881 0.26332 54.881 54.741 55.005 0 19 11 2 0 0 0 0.095405 1 30514 30514 34.102 9.4286 1 2835900 59092 6851 39498 40381 68827 68827 -0.009234132074311674 SLLDEFYKL 9 Unmodified _SLLDEFYKL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3018798828125 2 564.30279 1126.59103 0.29807 0.0001682 -0.33493 -0.000189 -0.036861 -2.0801E-05 564.302369221732 88.77 0.29922 88.77 88.621 88.92 0 32 18 3 0 0 0 0.34999 1 49119 49119 14.838 3.7238 1 1391500 59093 49 39499 40382 68828 68828 0.032794765546668714 SLLDEFYKL 9 Unmodified _SLLDEFYKL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3031005859375 2 564.30279 1126.59103 0.62253 0.0003513 -0.82175 -0.00046372 -0.19922 -0.00011242 564.3022591575271 89.315 0.50789 88.813 88.568 89.076 -0.50171 64 21 4 0 0 0 0.020973 2 48775 48775;48870 62.573 18.714 1 12464000 59094 49 39499 40382 68829;68830 68829 0.032794765546668714 SLLDEFYKL 9 Unmodified _SLLDEFYKL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.818115234375 2 564.30279 1126.59103 1.1198 0.00063191 -2.4893 -0.0014047 -1.3695 -0.00077282 564.3010975964314 99.263 0.13526 93.087 93.009 93.144 -6.1757 23 7 4 0 0 0 0.20207 1 66036 66036 11.495 3.5846 1 188940000 59095 49 39499 40382 68831 68831 0.032794765546668714 SLLDEFYKL 9 Unmodified _SLLDEFYKL_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 564.30279 1126.59103 0.29807 0.0001682 -0.33493 -0.000189 -0.036861 -2.0801E-05 564.302369221732 88.77 0.29922 88.77 88.621 88.92 0 -0.021309 0.00034516 NaN 62.573 32 18 3 NaN NaN NaN NaN 0 NaN NaN 0 1391500 59096 49 39499 40382 0.032794765546668714 SLLDGHFVL 9 Unmodified _SLLDGHFVL_ 0 0 0 ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A ENST00000535644.1_1_11:67163166-67165027:+|nuORF ENST00000535644.1_1_11:67163166-67165027:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7777709960938 2 500.776742 999.538931 0.51475 0.00025778 0.52348 0.00026214 1.0382 0.00051992 500.7770417681825 81.311 0.30612 80.818 80.711 81.017 -0.49247 35 13 3 0 0 0 0.095405 2 44501 44501;44598 34.102 17.16 1 3517600 59097 8237 39500 40383 68832;68833 68832 0.03914357931569157 SLLDGHFVL 9 Unmodified _SLLDGHFVL_ 0 0 0 ENST00000535644.1_1_11:67163166-67165027:+|nuORF;ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A ENST00000535644.1_1_11:67163166-67165027:+|nuORF ENST00000535644.1_1_11:67163166-67165027:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7759094238281 2 500.776742 999.538931 1.4126 0.00070739 -0.40123 -0.00020093 1.0114 0.00050646 500.77648792682976 97.805 0.1932 91.629 91.493 91.687 -6.1757 22 13 2 0 0 0 0.0086179 1 64790 64790 89.427 43.406 1 36689000 59098 8237 39500 40383 68834 68834 0.03914357931569157 SLLDGVVEKL 10 Unmodified _SLLDGVVEKL_ 0 0 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MSMS AL20221201_MKP_PDAC_01 4 536.8163452148438 2 536.816064 1071.61758 NaN NaN NaN NaN NaN NaN NaN 93.412 1 87.236 86.736 87.736 -6.1757 0 0 0 0.23647 1 61827 61827 40.725 13.502 1 59099 1553 39501 40384 68835 68835 0.08463165446005405 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3135375976562 2 515.313158 1028.61176 0.25319 0.00013047 0.41275 0.0002127 0.66594 0.00034317 515.3133535973026 93.655 0.35201 93.655 93.494 93.846 0 56 23 3 0 0 0 0.069655 2 51833 51740;51833 40.239 18.493 1 2469500 59100 16096;16097 39502 40385 68836;68837 68837 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3131103515625 2 515.313158 1028.61176 0.33153 0.00017084 -0.14278 -7.3575E-05 0.18876 9.7269E-05 515.3130632334461 94.163 0.47079 93.743 93.503 93.973 -0.42044 78 25 4 0 0 0 0.010301 2 51475 51374;51475 79.596 19.966 1 16324000 59101 16096;16097 39502 40385 68838;68839 68839 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3136596679688 2 515.313158 1028.61176 2.0315 0.0010469 -1.1014 -0.00056757 0.93013 0.00047931 515.312403836135 93.689 0.3232 93.712 93.546 93.869 0.022987 31 12 3 0 0 0 0.010301 1 52059 52059 79.596 23.419 1 3708400 59102 16096;16097 39502 40385 68840 68840 0.098600669343341 SLLDIIEKV 9 Unmodified _SLLDIIEKV_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.313720703125 2 515.313158 1028.61176 1.1282 0.0005814 -0.61648 -0.00031768 0.51176 0.00026372 515.3133202726643 100.04 0.24772 93.86 93.691 93.938 -6.1757 40 17 4 0 0 0 0.010301 1 66848 66848 79.596 19.522 1 326660000 59103 16096;16097 39502 40385 68841 68841 0.098600669343341 SLLDKIIGA 9 Unmodified _SLLDKIIGA_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.568115234375 1 929.566609 928.559333 1.1662 0.0010841 0.51531 0.00047902 1.6815 0.0015631 929.5671633436903 96.155 0.11398 89.98 89.893 90.007 -6.1757 11 6 2 0 0 0 0.0089732 1 63691 63691 86.332 0.69033 1 5547200 59104 8688 39503 40386 68842 68842 0.09219528591370363 SLLDNMIGV 9 Unmodified _SLLDNMIGV_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.255859375 2 481.254785 960.495018 0.6064 0.00029183 0.5559 0.00026753 1.1623 0.00055936 481.2553652726234 85.662 0.24402 85.161 85.1 85.344 -0.5015 19 11 2 0 0 0 0.49272 1 46878 46878 7.9102 2.1497 1 657790 59105 4081 39504 40387 68843 68843 0.013190054429401243 SLLDNMIGV 9 Unmodified _SLLDNMIGV_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2572937011719 2 481.254785 960.495018 1.4293 0.00068787 1.4547 0.00070006 2.884 0.0013879 481.25603307199765 97.215 0.31115 91.04 90.929 91.24 -6.1757 20 17 2 0 0 0 0.019303 1 64403 64403 64.236 22.142 1 7884300 59106 4081 39504 40387 68844 68844 0.013190054429401243 SLLDPVPEV 9 Unmodified _SLLDPVPEV_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.76904296875 2 484.768583 967.522613 0.3774 0.00018295 -0.13815 -6.6969E-05 0.23925 0.00011598 484.7684925179309 75.179 0.4047 75.179 74.965 75.369 0 66 23 4 0 0 0 0.013323 2 41857 41753;41857 71.134 9.7761 1 6102700 59107 1517 39505 40388 68845;68846 68846 0.03755231974810158 SLLDPVPEV 9 Unmodified _SLLDPVPEV_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 968.5303344726562 1 968.529889 967.522613 0.27064 0.00026212 0.012364 1.1975E-05 0.283 0.0002741 968.5299469718004 75.143 0.35496 75.143 74.988 75.343 0 56 21 3 0 0 0 0.0083938 2 41856 41754;41856 108 0 1 3862400 59108 1517 39505 40388 68847;68848 68848 0.03755231974810158 SLLDPVPEV 9 Unmodified _SLLDPVPEV_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7676391601562 2 484.768583 967.522613 0.90007 0.00043633 0.14564 7.06E-05 1.0457 0.00050693 484.76849047733987 84.107 0.4751 77.931 77.68 78.155 -6.1757 62 25 3 0 0 0 0.011968 2 55216 55216;55339 74.929 6.8483 1 28336000 59109 1517 39505 40388 68849;68850 68849 0.03755231974810158 SLLDPVPEV 9 Unmodified _SLLDPVPEV_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 968.5325317382812 1 968.529889 967.522613 0.66724 0.00064624 2.169 0.0021007 2.8362 0.0027469 968.5305634089715 84.076 0.38794 77.9 77.72 78.107 -6.1757 31 20 2 0 0 0 0.0036082 2 55361 55237;55361 123.45 19.702 1 12993000 59110 1517 39505 40388 68851;68852 68852 0.03755231974810158 SLLDQIPEM 9 Oxidation (M) _SLLDQIPEM(Oxidation (M))_ SLLDQIPEM(1) SLLDQIPEM(61) 0 0 1 ENSG00000176986|ENST00000345254|SEC24C ENSG00000176986|ENST00000345254|SEC24C ENSG00000176986|ENST00000345254|SEC24C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2647094726562 2 531.262807 1060.51106 0.34551 0.00018356 0.39963 0.00021231 0.74514 0.00039586 531.26282712177 58.736 0.38841 58.736 58.489 58.877 0 26 16 2 0 0 0 0.022193 1 32679 32679 61.357 21.4 1 2162600 59111 8643 39506 40389 68853 68853 1462 -0.016773331108424827 SLLDRFLATV 10 Unmodified _SLLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8297119140625 2 567.829506 1133.64446 2.2391 0.0012714 -1.4061 -0.00079842 0.833 0.000473 567.8287417126463 94.923 0.42645 94.937 94.768 95.194 0.014244 26 15 2 0 0 0 0.023726 1 52738 52738 81.915 40.076 1 13260000 59112 3394 39507 40390 68854 68854 0.08298274057187882 SLLDRFLATV 10 Unmodified _SLLDRFLATV_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MSMS AL20221201_MKP_PDAC_01 4 567.82958984375 2 567.829506 1133.64446 NaN NaN NaN NaN NaN NaN NaN 100.69 1 94.518 94.018 95.018 -6.1757 0 0 0 0.055851 1 67404 67404 62.869 17.129 1 59113 3394 39507 40390 68855 68855 0.08298274057187882 SLLDSCTKL 9 Carbamidomethyl (C) _SLLDSC(Carbamidomethyl (C))TKL_ SLLDSC(1)TKL SLLDSC(44)TKL 0 1 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.771484375 2 518.7708 1035.52705 0.88479 0.000459 1.0271 0.00053282 1.9119 0.00099182 518.7708463447062 47.693 0.33782 47.693 47.537 47.875 0 29 15 3 0 0 0 0.05483 1 26104 26104 43.772 16.144 1 12443000 59114 3127 39508 40391 68856 68856 325 0.010703731260491622 SLLDSCTKL 9 Carbamidomethyl (C) _SLLDSC(Carbamidomethyl (C))TKL_ SLLDSC(1)TKL SLLDSC(44)TKL 0 1 0 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7710571289062 2 518.7708 1035.52705 NaN NaN NaN NaN NaN NaN NaN 47.885 1 47.533 47.033 48.033 -0.3526 0 0 0 0.098496 1 25680 25680 43.772 12.504 1 59115 3127 39508 40391 68857 68857 325 0.010703731260491622 SLLDSVVGL 9 Unmodified _SLLDSVVGL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 902.5197143554688 1 902.519325 901.512048 -0.10542 -9.514E-05 0.45294 0.00040879 0.34752 0.00031365 902.5197303047148 89.711 0.36338 89.209 89.001 89.364 -0.50172 40 16 3 0 0 0 0.016184 2 49066 48970;49066 67.344 0 1 3021800 59116 7270 39509 40392 68858;68859 68859 0.057352493203779886 SLLDSVVGL 9 Unmodified _SLLDSVVGL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 902.5206298828125 1 902.519325 901.512048 0.21391 0.00019306 -0.16335 -0.00014743 0.050566 4.5637E-05 902.5194137210199 99.753 0.17357 93.577 93.49 93.664 -6.1757 22 11 3 0 0 0 0.0088975 1 66513 66513 104.8 7.7245 1 64559000 59117 7270 39509 40392 68860 68860 0.057352493203779886 SLLDTLVLL 9 Unmodified _SLLDTLVLL_ 0 0 0 ENSG00000254470|ENST00000532090|AP5B1;AP5B1|p.L537Pfs*67|1|0.09|ENSG00000254470|chr11:65778875-65778885|GCCAGCAAAGA/-|frameshift_variant ENSG00000254470|ENST00000532090|AP5B1 ENSG00000254470|ENST00000532090|AP5B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.8118896484375 2 493.810251 985.605948 0.91618 0.00045242 4.0167 0.0019835 4.9329 0.0024359 493.81208194630005 102.21 0.17552 96.039 95.918 96.093 -6.1757 13 7 2 0 0 0 0.087258 1 68605 68605 36.044 5.8194 1 11862000 59118 10774 39510 40393 68861 68861 0.11256968422662794 SLLEDKTYL 9 Unmodified _SLLEDKTYL_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2905883789062 2 541.292422 1080.57029 0.24631 0.00013333 -1.9051 -0.0010312 -1.6588 -0.00089787 541.2912984671545 65.906 0.25845 65.906 65.718 65.976 0 31 13 3 0 0 0 0.32235 1 36704 36704 23.148 2.6948 1 5673600 59119 7103 39511 40394 68862 68862 0.03322886174987616 SLLEEETKF 9 Unmodified _SLLEEETKF_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2820434570312 2 548.282054 1094.54956 0.48873 0.00026796 -0.22497 -0.00012335 0.26376 0.00014461 548.7831855802458 72.702 0.42101 72.702 72.564 72.985 0 47 20 3 0 0 0 0.2001 2 40443 40443;40542 23.148 0 1 2437000 + 59120 20482 39512 40395 68863;68864 68863 0.006062957953417936 SLLEEETKF 9 Unmodified _SLLEEETKF_ 0 0 0 REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7836303710938 2 548.282054 1094.54956 0.61588 0.00033768 0.036719 2.0132E-05 0.6526 0.00035781 548.2820855491012 73.227 0.73534 72.751 72.451 73.187 -0.47588 81 32 3 0 0 0 0.39863 1 39947 39947 12.532 4.6214 1 7636700 + 59121 20482 39512 40395 68865 68865 0.006062957953417936 SLLEEYGCCKE 11 Unmodified _SLLEEYGCCKE_ 0 0 0 ENSG00000166851|ENST00000300093|PLK1;ENST00000562272.5_1_16:23691188-23701381:+|nuORF ENSG00000166851|ENST00000300093|PLK1 ENSG00000166851|ENST00000300093|PLK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.2745971679688 2 637.275589 1272.53662 0.49604 0.00031612 -0.44932 -0.00028634 0.046726 2.9778E-05 637.2751960740547 60.326 0.17143 60.326 60.279 60.451 0 13 7 2 0 0 0 0.65108 1 33665 33665 8.7454 0 1 1048800 59122 7539 39513 40396 68866 68866 -0.08874226650709716 SLLEKAGPEL 10 Unmodified _SLLEKAGPEL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20221201_MKP_PDAC_01 4 528.8009033203125 2 528.800414 1055.58628 NaN NaN NaN NaN NaN NaN NaN 54.989 1 49.078 48.578 49.578 -5.9114 0 0 0 0.33727 1 34948 34948 34.932 11.142 1 59123 8296;16388 39514 40397 68867 68867 0.06070592411901998 SLLEKEKL 8 Unmodified _SLLEKEKL_ 0 0 0 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 ENSG00000036672|ENST00000260187|USP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2928771972656 2 480.292225 958.569897 NaN NaN NaN NaN NaN NaN NaN 61.046 1 61.046 60.546 61.546 0 0 0 0 0.786 1 34043 34043 24.021 2.4836 1 59124 624 39515 40398 68868 68868 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2925720214844 2 480.292225 958.569897 0.0078126 3.7523E-06 0.66171 0.00031781 0.66952 0.00032157 480.292529715631 61.443 0.33929 60.954 60.777 61.116 -0.48932 39 15 3 0 0 0 0.044011 1 33527 33527 47.749 1.7277 1 11634000 59125 3821 39516 40399 68869 68869 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2920227050781 2 480.292225 958.569897 0.86235 0.00041418 -0.6549 -0.00031455 0.20745 9.9636E-05 480.29188775218773 67.393 0.38181 61.217 61.02 61.402 -6.1757 40 21 3 0 0 0 0.0094097 1 43825 43825 82.529 10.607 1 15528000 59126 3821 39516 40399 68870 68870 0.08895511245816579 SLLEKSLGL 9 Unmodified _SLLEKSLGL_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 480.292225 958.569897 0.59537 0.00028595 -0.21602 -0.00010376 0.37935 0.0001822 480.2921364401291 61.987 0.22849 61.5 61.387 61.615 -0.48764 0.14117 0.00019538 NaN 82.529 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1141500 59127 3821 39516 40399 0.08895511245816579 SLLEKTMFL 9 Unmodified _SLLEKTMFL_ 0 0 0 REV__ENSG00000198932|ENST00000537097|GPRASP1 REV__ENSG00000198932|ENST00000537097|GPRASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.30078125 2 541.301736 1080.58892 0.73673 0.0003988 -0.40048 -0.00021678 0.33625 0.00018201 541.3013651402497 101.44 0.29869 95.262 95.163 95.461 -6.1757 23 15 3 0 0 0 0.35911 1 68169 68169 20.454 0 1 86401000 + 59128 24102 39517 40400 68871 68871 0.05184724545210884 SLLELFFELF 10 Unmodified _SLLELFFELF_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.3401489257812 2 629.341915 1256.66928 0.35107 0.00022094 -4.4271 -0.0027861 -4.076 -0.0025652 629.3386221194422 82.72 0.25432 82.223 82.077 82.331 -0.49751 15 10 2 0 0 0 0.50944 1 45266 45266 15.847 0 1 577810 59129 10075 39518 40401 68872 68872 0.0512090913987322 SLLELFFELF 10 Unmodified _SLLELFFELF_ 0 0 0 ENSG00000198301|ENST00000356260|SDAD1;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF ENSG00000198301|ENST00000356260|SDAD1 ENSG00000198301|ENST00000356260|SDAD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 629.341915 1256.66928 0.18775 0.00011816 -3.0283 -0.0019058 -2.8406 -0.0017877 629.3396802079772 82.298 0.21139 82.298 82.149 82.36 0 0.037525 0.00071044 NaN 15.847 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 281920 59130 10075 39518 40401 0.0512090913987322 SLLENIAKA 9 Unmodified _SLLENIAKA_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7817993164062 2 479.782025 957.549496 NaN NaN NaN NaN NaN NaN NaN 52.792 1 52.34 51.84 52.84 -0.45173 0 0 0 0.36957 1 28537 28537 21.537 1.0834 1 59131 9279 39519 40402 68873 68873 0.0690234058599799 SLLENIAKA 9 Unmodified _SLLENIAKA_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7827453613281 2 479.782025 957.549496 1.5333 0.00073564 -0.16769 -8.0453E-05 1.3656 0.00065518 479.7821103052046 58.73 0.31763 52.656 52.439 52.756 -6.0745 29 17 2 0 0 0 0.044296 1 37614 37614 47.594 5.7548 1 12753000 59132 9279 39519 40402 68874 68874 0.0690234058599799 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.8089599609375 2 529.808239 1057.60193 0.51622 0.0002735 -0.39654 -0.00021009 0.11969 6.3411E-05 529.8079540944252 72.647 0.49644 72.647 72.408 72.905 0 81 22 5 0 0 0 0.011291 2 40385 40385;40486 76.825 0 1 119090000 59133 1609 39520 40403 68875;68876 68875 0.07542878928961727 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.80859375 2 529.808239 1057.60193 0.60048 0.00031814 0.38915 0.00020617 0.98963 0.00052431 529.8083568062744 73.069 0.50893 72.594 72.295 72.804 -0.47588 73 22 4 0 0 0 0.021948 1 39881 39881 61.602 0 1 62645000 59134 1609 39520 40403 68877 68877 0.07542878928961727 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8089599609375 2 529.808239 1057.60193 0.04232 2.2421E-05 0.89145 0.0004723 0.93377 0.00049472 529.8087927021012 72.517 0.34208 72.558 72.358 72.7 0.041725 49 15 4 0 0 0 0.0089732 1 39879 39879 86.332 0 1 25042000 59135 1609 39520 40403 68878 68878 0.07542878928961727 SLLENLEKI 9 Unmodified _SLLENLEKI_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000553444.1_1_14:21679384-21680083:-|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8099975585938 2 529.808239 1057.60193 0.258 0.00013669 0.33 0.00017484 0.58801 0.00031153 529.8082281440567 93.41 0.91599 87.234 86.964 87.88 -6.1757 178 60 4 0 0 0 0.025842 2 61941 61812;61941 57.722 0 1 477970000 59136 1609 39520 40403 68879;68880 68880 0.07542878928961727 SLLEPFVYL 9 Unmodified _SLLEPFVYL_ 0 0 0 nc|ENSG00000168256|Q9NYR9-3|NKIRAS2;nc|ENSG00000168256|Q9NYR9-2|NKIRAS2;ENSG00000168256|ENST00000393885|NKIRAS2 nc|ENSG00000168256|Q9NYR9-3|NKIRAS2 nc|ENSG00000168256|Q9NYR9-3|NKIRAS2 MSMS AL20221201_MKP_PDAC_01 4 540.8034057617188 2 540.802426 1079.5903 NaN NaN NaN NaN NaN NaN NaN 101.61 1 95.433 94.933 95.933 -6.1757 0 0 0 0.20976 1 68191 68191 39.957 24.11 1 59137 7735 39521 40404 68881 68881 0.053686819056110835 SLLEQTQPAT 10 Unmodified _SLLEQTQPAT_ 0 0 0 ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2872924804688 2 544.285128 1086.5557 0.20757 0.00011298 0.64151 0.00034916 0.84908 0.00046214 544.2853712940721 75.996 0.45641 75.996 75.791 76.248 0 54 20 3 0 0 0 0.20962 1 42206 42206 32.786 0 1 17003000 59138 2192 39522 40405 68882 68882 0.015888140268771167 SLLEQTQPAT 10 Unmodified _SLLEQTQPAT_ 0 0 0 ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2855834960938 2 544.285128 1086.5557 -0.17938 -9.7636E-05 0.78541 0.00042749 0.60602 0.00032985 544.2854316637632 76.445 0.79572 75.966 75.661 76.457 -0.47945 95 42 3 0 0 0 0.10424 2 41813 41813;41916 45.7 0 1 60998000 59139 2192 39522 40405 68883;68884 68883 0.015888140268771167 SLLEQTQPAT 10 Unmodified _SLLEQTQPAT_ 0 0 0 ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN ENSG00000104320|ENST00000265433|NBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2858276367188 2 544.285128 1086.5557 0.18463 0.00010049 1.1235 0.0006115 1.3081 0.00071199 544.285881660477 75.994 0.27354 76.042 75.909 76.182 0.047951 20 11 2 0 0 0 0.16361 1 41900 41900 38.176 0 1 4126400 59140 2192 39522 40405 68885 68885 0.015888140268771167 SLLESNKDLLL 11 Unmodified _SLLESNKDLLL_ 0 0 0 ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000535768.1_1_11:62651934-62652955:+|nuORF ENST00000538682.5_1_11:62651934-62653989:+|nuORF ENST00000538682.5_1_11:62651934-62653989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.3598022460938 2 622.85846 1243.70237 0.39819 0.00024802 -0.64033 -0.00039884 -0.24214 -0.00015082 622.8578191319837 68.98 0.24635 68.98 68.838 69.084 0 18 10 2 0 0 0 0.5551 1 38420 38420 13.615 3.5409 1 1029100 59141 7700 39523 40406 68886 68886 0.09026491191957575 SLLESNKDLLL 11 Unmodified _SLLESNKDLLL_ 0 0 0 ENST00000538682.5_1_11:62651934-62653989:+|nuORF;ENST00000457660.6_1_11:62649366-62653989:+|nuORF;ENSG00000168003|ENST00000338663|SLC3A2;nc|ENSG00000168003|P08195-3|SLC3A2;nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-5|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2;ENST00000535768.1_1_11:62651934-62652955:+|nuORF ENST00000538682.5_1_11:62651934-62653989:+|nuORF ENST00000538682.5_1_11:62651934-62653989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8584594726562 2 622.85846 1243.70237 -0.03746 -2.3332E-05 0.72572 0.00045202 0.68826 0.00042869 622.8586505884399 69.37 0.27798 68.891 68.742 69.02 -0.47903 23 11 3 0 0 0 0.14665 1 37941 37941 37.075 3.6297 1 1577300 59142 7700 39523 40406 68887 68887 0.09026491191957575 SLLESVQKL 9 Unmodified _SLLESVQKL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.8028259277344 2 508.802957 1015.59136 0.0057811 2.9414E-06 -0.31521 -0.00016038 -0.30942 -0.00015744 508.80275515383374 58.8 0.28178 58.309 58.212 58.494 -0.49079 24 13 3 0 0 0 0.10247 1 32024 32024 32.786 8.7651 1 4337700 59143 8479 39524 40407 68888 68888 0.08418896274520193 SLLESVQKL 9 Unmodified _SLLESVQKL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.802957 1015.59136 0.43621 0.00022194 -1.661 -0.00084515 -1.2248 -0.0006232 508.80167285049305 58.414 0.21883 58.414 58.316 58.535 0 0.052474 -0.0012619 NaN 32.786 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 666280 59144 8479 39524 40407 0.08418896274520193 SLLEVNEESTV 11 Unmodified _SLLEVNEESTV_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.3068237304688 2 610.306258 1218.59796 -0.66824 -0.00040783 1.624 0.00099116 0.9558 0.00058333 610.3071461137602 55.394 0.24635 55.394 55.305 55.552 0 17 10 2 0 0 0 0.53952 1 30786 30786 14.405 5.66 1 1811400 59145 7019 39525 40408 68889 68889 -0.0025925535542228317 SLLEWIQWRER 11 Unmodified _SLLEWIQWRER_ 0 0 0 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.9404296875 3 505.940409 1514.7994 -0.13535 -6.8481E-05 -0.31974 -0.00016177 -0.4551 -0.00023025 505.9402370224201 58.376 0.34734 57.885 57.723 58.07 -0.49079 55 16 4 0 0 0 0.71728 1 31793 31793 2.6312 0.19645 1 24876000 + 59146 17233 39526 40409 68890 68890 0.06258898191572371 SLLEWIQWRER 11 Unmodified _SLLEWIQWRER_ 0 0 0 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 REV__nc|ENSG00000047648|O43182-4|ARHGAP6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 505.940409 1514.7994 0.68155 0.00034482 -0.56553 -0.00028613 0.11602 5.8698E-05 505.939847087012 57.784 0.20104 57.784 57.716 57.917 0 -0.050436 -0.00030483 NaN 2.6312 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1199300 + 59147 17233 39526 40409 0.06258898191572371 SLLGFVYKL 9 Unmodified _SLLGFVYKL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3128662109375 2 520.312961 1038.61137 -0.014489 -7.5388E-06 0.19542 0.00010168 0.18093 9.414E-05 520.3129674462069 88.009 0.34463 88.062 87.888 88.233 0.053352 35 14 3 0 0 0 0.05447 2 49012 48900;49012 43.858 14.777 1 70026000 59148 9407 39527 40410 68891;68892 68892 0.09360692005134297 SLLGFVYKL 9 Unmodified _SLLGFVYKL_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.313232421875 2 520.312961 1038.61137 0.80197 0.00041728 0.15135 7.875E-05 0.95332 0.00049603 520.313034507063 99.564 0.2506 93.388 93.29 93.541 -6.1757 49 15 4 0 0 0 0.018301 1 66314 66314 65.235 36.153 1 323220000 59149 9407 39527 40410 68893 68893 0.09360692005134297 SLLGGDVVSV 10 Unmodified _SLLGGDVVSV_ 0 0 0 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.525146484375 1 945.525138 944.517862 -0.17266 -0.00016325 0.60501 0.00057205 0.43235 0.0004088 945.5257662010503 68.9 0.28326 68.9 68.74 69.023 0 25 11 3 0 0 0 0.24625 1 38345 38345 30.637 6.616 1 2181600 59150 16299 39528 40411 68894 68894 0.04338347832049294 SLLGGDVVSV 10 Unmodified _SLLGGDVVSV_ 0 0 0 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2664489746094 2 473.266207 944.517862 0.38252 0.00018103 0.10543 4.9897E-05 0.48795 0.00023093 473.26631115347084 68.918 0.34964 68.918 68.717 69.066 0 37 14 3 0 0 0 0.1028 2 38373 38373;38473 46.021 13.715 1 4726300 59151 16299 39528 40411 68895;68896 68895 0.04338347832049294 SLLGGDVVSV 10 Unmodified _SLLGGDVVSV_ 0 0 0 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2669982910156 2 473.266207 944.517862 0.094856 4.4892E-05 1.1541 0.00054621 1.249 0.0005911 473.2670214243131 69.406 0.30019 68.927 68.742 69.042 -0.47903 20 12 2 0 0 0 0.33553 1 37942 37942 25.399 7.253 1 974370 59152 16299 39528 40411 68897 68897 0.04338347832049294 SLLGGDVVSV 10 Unmodified _SLLGGDVVSV_ 0 0 0 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2655029296875 2 473.266207 944.517862 0.6223 0.00029451 -1.9783 -0.00093625 -1.356 -0.00064173 473.26497373817256 77.554 0.36596 71.378 71.185 71.551 -6.1757 29 20 2 0 0 0 0.16524 1 50674 50674 37.974 7.3375 1 13181000 59153 16299 39528 40411 68898 68898 0.04338347832049294 SLLGGTLVSA 10 Unmodified _SLLGGTLVSA_ 0 0 0 ENSG00000110628|ENST00000649076|SLC22A18;ENST00000498244.1_1_11:2930522-2930941:+|nuORF ENSG00000110628|ENST00000649076|SLC22A18 ENSG00000110628|ENST00000649076|SLC22A18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 917.5287475585938 1 917.530224 916.522947 0.23359 0.00021433 0.013641 1.2516E-05 0.24723 0.00022685 917.5300824853609 67.523 0.27641 67.041 66.889 67.165 -0.48218 18 11 2 0 0 0 0.11755 1 36853 36853 43.858 5.8843 1 1719200 59154 2728 39529 40412 68899 68899 0.06134651694674176 SLLGHLMIV 9 Oxidation (M) _SLLGHLM(Oxidation (M))IV_ SLLGHLM(1)IV SLLGHLM(82)IV 0 0 1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7889709472656 2 499.788795 997.563038 0.49449 0.00024714 -0.20472 -0.00010232 0.28977 0.00014482 499.78887117746854 71.927 0.38135 71.966 71.748 72.129 0.039024 59 18 4 0 0 0 0.0094915 2 39656 39553;39656 81.864 34.943 1 13471000 59155 7885 39530 40413 68900;68901 68901 1338 0.06415875093591694 SLLGHLMIV 9 Oxidation (M) _SLLGHLM(Oxidation (M))IV_ SLLGHLM(1)IV SLLGHLM(78)IV 0 0 1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7890625 2 499.788795 997.563038 1.4574 0.00072837 -1.2794 -0.00063941 0.17801 8.8967E-05 499.7883425953665 95.56 0.25635 89.385 89.264 89.521 -6.1757 34 15 3 0 0 0 0.010877 1 63269 63269 77.984 39.833 1 39304000 59156 7885 39530 40413 68902 68902 1338 0.06415875093591694 SLLGHLMIV 9 Unmodified _SLLGHLMIV_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2930297851562 2 491.791338 981.568123 1.0113 0.00049737 -0.08632 -4.2451E-05 0.92503 0.00045492 491.791499207068 99.462 0.11353 93.286 93.228 93.341 -6.1757 15 6 3 0 0 0 0.023164 1 66240 66240 60.39 22.238 1 67221000 59157 7885 39530 40414 68903 68903 0.07660178956200525 SLLGMCWVF 9 Unmodified _SLLGMCWVF_ 0 0 0 ENST00000480958.1_1_17:41902775-41908980:-|nuORF ENST00000480958.1_1_17:41902775-41908980:-|nuORF ENST00000480958.1_1_17:41902775-41908980:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2572021484375 2 528.256274 1054.49799 0.73688 0.00038926 -0.46449 -0.00024537 0.2724 0.0001439 528.2556726931106 81.031 0.87315 80.538 80.102 80.975 -0.49247 52 45 2 0 0 0 0.39863 1 44271 44271 12.532 0.89125 1 1772200 59158 14068 39531 40415 68904 68904 -0.027074427039224247 SLLGRSLEL 9 Unmodified _SLLGRSLEL_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000090372|Q9NRL3-2|STRN4 ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2947692871094 2 494.295299 986.576045 0.69176 0.00034194 -1.2251 -0.00060556 -0.53334 -0.00026363 494.2945104602672 63.904 0.27267 63.419 63.319 63.592 -0.48512 22 15 2 0 0 0 0.091924 1 34864 34864 34.932 0.53034 1 3182400 59159 1555 39532 40416 68905 68905 0.08222029477315118 SLLHFTENL 9 Unmodified _SLLHFTENL_ 0 0 0 ENSG00000171320|ENST00000305188|ESCO2;ENST00000524293.1_1_8:27633031-27634707:+|nuORF ENSG00000171320|ENST00000305188|ESCO2 ENSG00000171320|ENST00000305188|ESCO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2836303710938 2 537.284931 1072.55531 NaN NaN NaN NaN NaN NaN NaN 65.927 1 65.443 64.943 65.943 -0.48428 0 0 0 0.20153 1 35990 35990 30.637 13.694 1 59160 8092 39533 40417 68906 68906 0.021934390976639406 SLLIDYDLP 9 Unmodified _SLLIDYDLP_ 0 0 0 ENST00000576035.1_1_17:2489687-2489864:-|nuORF ENST00000576035.1_1_17:2489687-2489864:-|nuORF ENST00000576035.1_1_17:2489687-2489864:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.8057250976562 2 524.78169 1047.54883 0.21518 0.00011292 1.3375 0.00070191 1.5527 0.00081483 524.7822667948328 84.74 0.6199 78.564 78.318 78.938 -6.1757 63 36 2 0 0 0 0.11012 1 55868 55868 36.044 0 1 32169000 59161 15519 39534 40418 68907 68907 0.026955011462860057 SLLIEAPTQLR 11 Unmodified _SLLIEAPTQLR_ 0 0 0 REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF REV__ENST00000558801.1_1_15:84960100-84962592:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2223205566406 3 414.246839 1239.71869 NaN NaN NaN NaN NaN NaN NaN 47.256 1 47.22 46.72 47.72 -0.036404 0 0 0 0.93984 1 25455 25455 2.6312 0 1 + 59162 28800 39535 40419 68908 68908 0.10841617148707883 SLLKYWATL 9 Unmodified _SLLKYWATL_ 0 0 0 ENST00000485946.1_1_13:100806772-100812980:+|nuORF ENST00000485946.1_1_13:100806772-100812980:+|nuORF ENST00000485946.1_1_13:100806772-100812980:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 547.816650390625 2 547.815867 1093.61718 NaN NaN NaN NaN NaN NaN NaN 96.416 1 90.24 89.74 90.74 -6.1757 0 0 0 0.20153 1 63896 63896 30.637 2.1497 1 59163 14176 39536 40420 68909 68909 0.07411790516812289 SLLLFLTSF 9 Unmodified _SLLLFLTSF_ 0 0 0 nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9 nc|ENSG00000113073|Q96Q91-2|SLC4A9 nc|ENSG00000113073|Q96Q91-2|SLC4A9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2811889648438 2 520.804968 1039.59538 -0.16438 -8.5608E-05 -0.51438 -0.00026789 -0.67875 -0.0003535 520.8049634687561 54.032 0.23785 53.965 53.863 54.101 -0.066936 20 11 2 0 0 0 0.21473 1 29318 29318 4.3292 0 1 2496400 59164 2940 39537 40421 68910 68910 0.07716985768229279 SLLLKAPLRL 10 Unmodified _SLLLKAPLRL_ 0 0 0 ENST00000454907.1_1_6:167115502-167115598:-|nuORF;ENST00000497563.5_1_7:23385645-23387369:-|nuORF;ENST00000467592.5_1_7:23387225-23387369:-|nuORF;ENST00000258729.7_1_7:23387225-23390963:-|nuORF ENST00000454907.1_1_6:167115502-167115598:-|nuORF ENST00000454907.1_1_6:167115502-167115598:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7913208007812 2 562.381709 1122.74886 NaN NaN NaN NaN NaN NaN NaN 76.314 1 75.835 75.335 76.335 -0.47945 0 0 0 0.99091 1 41774 41774 1.6526 0 1 59165 11206 39538 40422 68911 68911 0.19240020604524943 SLLLRIGEV 9 Unmodified _SLLLRIGEV_ 0 0 0 ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF ENSG00000197226|ENST00000355235|TBC1D9B ENSG00000197226|ENST00000355235|TBC1D9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.314453125 2 500.313492 998.612431 0.36162 0.00018093 0.32903 0.00016462 0.69066 0.00034554 500.3136625196873 78.44 0.19426 78.44 78.359 78.553 0 12 9 2 0 0 0 0.38785 1 43576 43576 13.042 0 1 597130 59166 9930 39539 40423 68912 68912 0.11306906374045411 SLLMMKWL 8 Unmodified _SLLMMKWL_ 0 0 0 REV__ENST00000480144.5_1_15:59192070-59209171:-|nuORF REV__ENST00000480144.5_1_15:59192070-59209171:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2812194824219 2 511.282292 1020.55003 -0.095598 -4.8877E-05 -0.23281 -0.00011903 -0.32841 -0.00016791 511.2819568633321 65.666 0.31562 65.182 65.021 65.337 -0.48428 30 13 3 0 0 0 0.80143 1 35920 35920 5.7604 0 1 2633700 + 59167 27666 39540 40424 68913 68913 0.04057720709840851 SLLPAIVEL 9 Unmodified _SLLPAIVEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.5892333984375 1 954.58701 953.579734 0.25054 0.00023916 1.4264 0.0013616 1.6769 0.0016008 954.5880905780132 99.725 0.14478 99.568 99.496 99.641 -0.1575 10 4 3 0 0 0 0.0088174 1 54443 54443 103.75 14.845 1 4479700 59168 2336 39541 40425 68914 68914 0.10108699251179587 SLLPAIVEL 9 Unmodified _SLLPAIVEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.5884399414062 1 954.58701 953.579734 1.1996 0.0011451 0.88571 0.00084548 2.0853 0.0019906 954.5865289538249 101.04 0.12566 94.86 94.798 94.923 -6.1757 16 6 3 0 0 0 0.0014543 1 67712 67712 136.33 46.907 1 118230000 59169 2336 39541 40425 68915 68915 0.10108699251179587 SLLPAIVEL 9 Unmodified _SLLPAIVEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7977600097656 2 477.797143 953.579734 1.4213 0.00067908 1.5601 0.0007454 2.9813 0.0014245 477.7971420167126 101.05 0.12566 94.877 94.798 94.923 -6.1757 15 6 3 0 0 0 0.008678 1 67717 67717 88.904 27.546 1 96682000 59170 2336 39541 40425 68916 68916 0.10108699251179587 SLLPEGPPAI 10 Unmodified _SLLPEGPPAI_ 0 0 0 nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 nc|ENSG00000051108|Q15011-4|HERPUD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2845153808594 2 497.2844 992.554247 0.68169 0.00033899 -1.7379 -0.00086424 -1.0562 -0.00052524 497.28363188280395 75.512 0.23265 75.035 74.98 75.212 -0.47714 17 11 2 0 0 0 0.50944 1 41366 41366 15.847 3.3156 1 479110 59171 730 39542 40426 68917 68917 0.05767224728754172 SLLPHETLL 9 Unmodified _SLLPHETLL_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7995300292969 2 511.797675 1021.5808 0.51822 0.00026522 1.3408 0.00068622 1.859 0.00095144 511.79837375407004 64.272 0.31604 63.787 63.592 63.908 -0.48512 24 14 3 0 0 0 0.095405 1 35074 35074 34.102 5.6156 1 828560 59172 16348 39543 40427 68918 68918 0.07086913620105406 SLLPLRVLL 9 Unmodified _SLLPLRVLL_ 0 0 0 ENST00000397901.7_1_16:89720316-89724043:-|nuORF ENST00000397901.7_1_16:89720316-89724043:-|nuORF ENST00000397901.7_1_16:89720316-89724043:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3512573242188 2 512.349877 1022.6852 2.2824 0.0011694 -0.26455 -0.00013554 2.0179 0.0010339 512.34961832671 94.55 0.39367 94.564 94.352 94.746 0.014252 35 14 3 0 0 0 0.044011 1 52515 52515 47.749 3.3417 1 3648600 59173 12835 39544 40428 68919 68919 0.1747666016748326 SLLPLRVLL 9 Unmodified _SLLPLRVLL_ 0 0 0 ENST00000397901.7_1_16:89720316-89724043:-|nuORF ENST00000397901.7_1_16:89720316-89724043:-|nuORF ENST00000397901.7_1_16:89720316-89724043:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.3507080078125 2 512.349877 1022.6852 0.49501 0.00025362 0.061439 3.1478E-05 0.55645 0.0002851 512.3498120574698 100.57 0.11533 94.393 94.33 94.445 -6.1757 16 7 3 0 0 0 0.011968 1 67281 67281 74.929 26.583 1 52678000 59174 12835 39544 40428 68920 68920 0.1747666016748326 SLLPTSPRL 9 Unmodified _SLLPTSPRL_ 0 0 0 nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.297607421875 2 492.297842 982.581131 0.23276 0.00011459 -0.36832 -0.00018132 -0.13556 -6.6735E-05 492.29739569893087 56.944 0.17411 56.458 56.349 56.523 -0.48554 10 7 2 0 0 0 0.18144 1 30941 30941 24.991 6.8446 1 1758600 59175 16128 39545 40429 68921 68921 0.08914333339930636 SLLPTSPRL 9 Unmodified _SLLPTSPRL_ 0 0 0 nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2980041503906 2 492.297842 982.581131 0.49952 0.00024591 -0.22375 -0.00011015 0.27577 0.00013576 492.2977429748001 56.589 0.3185 56.52 56.36 56.678 -0.068737 26 15 2 0 0 0 0.032796 2 30748 30748;30851 53.833 17.327 1 13237000 59176 16128 39545 40429 68922;68923 68922 0.08914333339930636 SLLPTSPRL 9 Unmodified _SLLPTSPRL_ 0 0 0 nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 nc|ENSG00000112983|Q9H0E9-3|BRD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2975158691406 2 492.297842 982.581131 1.8175 0.00089473 -0.74199 -0.00036528 1.0755 0.00052945 492.29754497048987 62.832 0.4353 56.656 56.461 56.896 -6.1757 37 21 2 0 0 0 0.032796 2 40529 40529;40666 53.833 15.859 1 34315000 59177 16128 39545 40429 68924;68925 68924 0.08914333339930636 SLLQALNEV 9 Unmodified _SLLQALNEV_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2806091308594 2 493.779482 985.544411 0.15103 7.4576E-05 -0.18612 -9.1902E-05 -0.035087 -1.7325E-05 493.7795429936051 79.954 0.29211 79.954 79.797 80.089 0 32 15 3 0 0 0 0.14602 1 44353 44353 28.487 6.7402 1 1459100 59178 9907 39546 40430 68926 68926 0.051060367233731085 SLLQALNEV 9 Unmodified _SLLQALNEV_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.781005859375 2 493.779482 985.544411 1.0791 0.00053285 1.9426 0.00095919 3.0217 0.001492 493.78050375083524 80.453 0.5578 79.961 79.776 80.334 -0.49247 43 22 3 0 0 0 0.14602 1 44033 44033 28.487 5.3384 1 1545500 59179 9907 39546 40430 68927 68927 0.051060367233731085 SLLQALNEV 9 Unmodified _SLLQALNEV_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7796630859375 2 493.779482 985.544411 1.293 0.00063845 -0.92965 -0.00045904 0.36335 0.00017941 493.77923453386194 90.821 0.54987 84.646 84.389 84.939 -6.1757 42 32 2 0 0 0 0.025842 1 60107 60107 57.722 1.5449 1 7415900 59180 9907 39546 40430 68928 68928 0.051060367233731085 SLLQDQRL 8 Unmodified _SLLQDQRL_ 0 0 0 nc|ENSG00000189077|Q9BXJ8-2|TMEM120A nc|ENSG00000189077|Q9BXJ8-2|TMEM120A nc|ENSG00000189077|Q9BXJ8-2|TMEM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2817077636719 2 486.777274 971.539994 0.53948 0.00026261 1.0626 0.00051726 1.6021 0.00077987 486.77538110669764 93.823 0.54947 93.403 93.127 93.677 -0.42044 67 24 4 0 0 0 0.64853 1 51267 51267 21.747 0 1 1317000 59181 16468 39547 40431 68929 68929 0.053085723004642205 SLLQEVVYL 9 Unmodified _SLLQEVVYL_ 0 0 0 nc|ENSG00000130540|Q9BR01-2|SULT4A1;ENSG00000130540|ENST00000330884|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3067626953125 2 532.305332 1062.59611 NaN NaN NaN NaN NaN NaN NaN 89.843 1 89.843 89.343 90.343 0 0 0 0 0.82396 1 49707 49707 4.756 0 1 59182 4222 39548 40432 68930 68930 0.0673178041729443 SLLQGSPHL 9 Unmodified _SLLQGSPHL_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2669372558594 2 476.266542 950.51853 -0.46585 -0.00022187 0.36502 0.00017385 -0.10083 -4.8023E-05 476.26681865328544 48.568 0.28364 48.568 48.452 48.736 0 37 13 3 0 0 0 0.022193 1 26633 26633 61.357 21.4 1 9843800 59183 8259 39549 40433 68931 68931 0.04129187271757928 SLLQGSPHL 9 Unmodified _SLLQGSPHL_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2669067382812 2 476.266542 950.51853 0.39428 0.00018778 0.14535 6.9223E-05 0.53963 0.00025701 476.26653939513426 48.798 0.33798 48.426 48.278 48.616 -0.37172 52 18 4 0 0 0 0.013323 2 26266 26154;26266 71.134 29.294 1 45705000 59184 8259 39549 40433 68932;68933 68933 0.04129187271757928 SLLQGSPHL 9 Unmodified _SLLQGSPHL_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.266845703125 2 476.266542 950.51853 0.77988 0.00037143 -0.38367 -0.00018273 0.39621 0.0001887 476.26612937647207 54.587 0.67544 48.722 48.302 48.977 -5.8653 100 41 4 0 0 0 0.022193 3 34674 34525;34531;34674 61.357 21.4 1 167750000 59185 8259 39549 40433 68934;68935;68936 68936 0.04129187271757928 SLLQGSPHL 9 Unmodified _SLLQGSPHL_ 0 0 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 476.266542 950.51853 0.31514 0.00015009 1.6123 0.0007679 1.9275 0.00091799 476.2672687232165 48.468 0.25472 48.424 48.281 48.536 -0.04369 -0.11103 0.0014074 NaN 71.134 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1754500 59186 8259 39549 40433 0.04129187271757928 SLLQIDEKL 9 Unmodified _SLLQIDEKL_ 0 0 0 REV__ENSG00000140015|ENST00000322893|KCNH5 REV__ENSG00000140015|ENST00000322893|KCNH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.8084716796875 2 529.808239 1057.60193 0.60048 0.00031814 0.38915 0.00020617 0.98963 0.00052431 529.8083568062744 73.069 0.50893 72.594 72.295 72.804 -0.47588 73 22 4 0 0 0 0.0090524 1 39976 39976 85.642 6.0452 1 62645000 + 59187 20446 39550 40434 68937 68937 0.07542878928961727 SLLQRARRA 9 Unmodified _SLLQRARRA_ 0 0 0 CON__P00735 CON__P00735 CON__P00735 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.783447265625 2 535.830706 1069.64686 1.5544 0.00083287 0.051365 2.7523E-05 1.6057 0.0008604 535.8306981345347 82.165 0.24149 82.227 82.08 82.321 0.062004 17 9 3 0 0 0 0.17331 1 45378 45378 17.113 17.113 1 7020800 + 59188 153 39551 40435 68938 68938 0.11482167305507573 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8198852539062 2 532.82115 1063.62775 NaN NaN NaN NaN NaN NaN NaN 70.134 1 69.655 69.155 70.155 -0.47903 0 0 0 0.40636 1 38351 38351 26.268 9.3258 1 59189 1816 39552 40436 68939 68939 0.09847773171213703 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8211059570312 2 532.82115 1063.62775 0.38984 0.00020771 -0.97987 -0.00052209 -0.59003 -0.00031438 532.8206852323291 69.513 0.33776 69.544 69.409 69.747 0.030914 49 19 4 0 0 0 0.08907 1 38262 38262 45.7 11.298 1 45876000 59190 1816 39552 40436 68940 68940 0.09847773171213703 SLLQTLYKV 9 Unmodified _SLLQTLYKV_ 0 0 0 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8211669921875 2 532.82115 1063.62775 1.1327 0.00060351 -0.3431 -0.00018281 0.78957 0.0004207 532.821080121745 90.843 1.2418 84.667 84.389 85.631 -6.1757 144 71 3 0 0 0 0.01861 3 60260 59993;60122;60260 79.596 28.483 1 66824000 59191 1816 39552 40436 68941;68942;68943 68943 0.09847773171213703 SLLQTNIAL 9 Unmodified _SLLQTNIAL_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7947082519531 2 486.78985 971.565146 0.2442 0.00011887 3.5905 0.0017478 3.8347 0.0018667 486.7913502629176 76.413 0.34314 75.933 75.71 76.053 -0.47945 35 18 3 0 0 0 0.028475 1 41798 41798 56.177 8.4284 1 5365900 59192 748 39553 40437 68944 68944 0.07822627103018931 SLLQTNIAL 9 Unmodified _SLLQTNIAL_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7901916503906 2 486.78985 971.565146 0.52616 0.00025613 -0.23692 -0.00011533 0.28924 0.0001408 486.7897329154082 84.413 0.46359 78.237 77.981 78.445 -6.1757 59 26 3 0 0 0 0.018301 2 55426 55426;55560 65.235 9.058 1 31954000 59193 748 39553 40437 68945;68946 68945 0.07822627103018931 SLLQTQHAL 9 Unmodified _SLLQTQHAL_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7848815917969 2 505.785099 1009.55564 0.063424 3.2079E-05 -0.074401 -3.7631E-05 -0.010977 -5.5518E-06 505.7850349724785 41.776 0.23607 41.776 41.645 41.881 0 23 11 3 0 0 0 0.022193 1 22539 22539 61.357 3.8861 1 6768400 59194 4380 39554 40438 68947 68947 0.05124858817509903 SLLQTQHAL 9 Unmodified _SLLQTQHAL_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7847290039062 2 505.785099 1009.55564 -0.61003 -0.00030854 0.25394 0.00012844 -0.35609 -0.0001801 505.7854237864982 41.979 0.1864 41.672 41.574 41.761 -0.30682 13 8 2 0 0 0 0.010818 1 22278 22278 78.149 12.914 1 7763600 59195 4380 39554 40438 68948 68948 0.05124858817509903 SLLQTQHAL 9 Unmodified _SLLQTQHAL_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7849426269531 2 505.785099 1009.55564 0.72243 0.0003654 -0.91481 -0.0004627 -0.19238 -9.7302E-05 505.7844739795214 47.122 0.31044 42.042 41.886 42.196 -5.0805 42 25 2 0 0 0 0.024882 1 29253 29253 58.679 2.5018 1 24838000 59196 4380 39554 40438 68949 68949 0.05124858817509903 SLLRELFTL 9 Unmodified _SLLRELFTL_ 0 0 0 REV__ENST00000535170.5_1_7:99638839-99639052:+|nuORF REV__ENST00000535170.5_1_7:99638839-99639052:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3272094726562 2 546.326599 1090.63865 0.35642 0.00019472 0.031798 1.7372E-05 0.38822 0.00021209 546.3267318897621 83.533 0.23598 83.035 82.914 83.15 -0.49751 16 9 2 0 0 0 0.45045 1 45722 45722 10.074 0 1 307120 + 59197 28519 39555 40439 68950 68950 0.09695175545539314 SLLRFACYI 9 Unmodified _SLLRFACYI_ 0 0 0 REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6 REV__nc|ENSG00000197901|Q4U2R8-3|SLC22A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2968139648438 2 543.294245 1084.57394 0.85816 0.00046623 2.9029 0.0015772 3.7611 0.0020434 543.2957459530281 99.304 0.18667 93.129 93.028 93.214 -6.1757 21 11 2 0 0 0 0.087258 1 66069 66069 36.044 36.044 1 77519000 + 59198 23967 39556 40440 68951 68951 0.0350327746784842 SLLRHKAA 8 Unmodified _SLLRHKAA_ 0 0 0 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 ENSG00000261221|ENST00000568956|ZNF865 MSMS AL20221201_MKP_PDAC_01 4 448.2771606445312 2 448.277244 894.539935 NaN NaN NaN NaN NaN NaN NaN 37.473 1 33.189 32.689 33.689 -4.2835 0 0 0 0.69365 1 21995 21995 28.487 5.3384 1 59199 10836 39557 40441 68952 68952 0.08844617091131113 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7881469726562 2 484.787444 967.560336 0.79307 0.00038447 0.67505 0.00032726 1.4681 0.00071173 484.7878619495206 36.557 0.23895 36.557 36.409 36.648 0 29 11 3 0 0 0 0.80311 1 19376 19376 4.756 0 1 9890200 + 59200 20551 39558 40442 68953 68953 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7878723144531 2 484.787444 967.560336 -0.34656 -0.00016801 0.68845 0.00033375 0.34189 0.00016574 484.78775776682807 35.956 0.21471 35.734 35.599 35.813 -0.2224 13 9 2 0 0 0 0.80311 1 18859 18859 4.756 0 1 3535400 + 59201 20551 39558 40442 68954 68954 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7887268066406 2 484.787444 967.560336 -0.084134 -4.0787E-05 1.1553 0.00056008 1.0712 0.00051929 484.7880320558777 36.536 0.35493 36.558 36.372 36.727 0.021545 46 16 4 0 0 0 0.79669 2 19311 19311;19415 8.5933 3.3626 1 33093000 + 59202 20551 39558 40442 68955;68956 68955 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 484.787444 967.560336 0.14117 6.8437E-05 1.9738 0.0009569 2.115 0.0010253 484.7882851929205 35.761 0.28384 35.761 35.594 35.878 0 0.050373 0.00042988 NaN 4.756 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 15469000 + 59203 20551 39558 40442 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.787444 967.560336 -0.34656 -0.00016801 0.68845 0.00033375 0.34189 0.00016574 484.78775776682807 35.956 0.21471 35.734 35.599 35.813 -0.2224 0.023823 -0.00081641 NaN 4.756 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3535400 + 59204 20551 39558 40442 0.07525787750944346 SLLRPHVF 8 Unmodified _SLLRPHVF_ 0 0 0 REV__ENSG00000141699|ENST00000309428|RETREG3 REV__ENSG00000141699|ENST00000309428|RETREG3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 484.787444 967.560336 0.070124 3.3995E-05 1.4395 0.00069783 1.5096 0.00073182 484.7880391426494 35.611 0.3713 35.636 35.373 35.744 0.024967 -0.074196 -8.8257E-05 NaN 4.756 51 17 5 NaN NaN NaN NaN 0 NaN NaN 0 89675000 + 59205 20551 39558 40442 0.07525787750944346 SLLRSIFTV 9 Unmodified _SLLRSIFTV_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.3134765625 2 518.313492 1034.61243 0.34566 0.00017916 -0.16306 -8.4514E-05 0.18261 9.4647E-05 518.3134089627715 78.21 0.33347 78.262 78.086 78.419 0.052452 35 13 3 0 0 0 0.024189 1 43164 43164 59.368 17.529 1 13361000 59206 2602 39559 40443 68957 68957 0.09650906374031365 SLLRSIFTV 9 Unmodified _SLLRSIFTV_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.31298828125 2 518.313492 1034.61243 NaN NaN NaN NaN NaN NaN NaN 78.367 1 78.419 77.919 78.919 0.052452 0 0 0 0.17798 1 43276 43276 33.445 8.0456 1 59207 2602 39559 40443 68958 68958 0.09650906374031365 SLLRSIFTV 9 Unmodified _SLLRSIFTV_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3137817382812 2 518.313492 1034.61243 0.87057 0.00045123 0.20789 0.00010775 1.0785 0.00055898 518.3136485864267 99.174 0.15742 92.998 92.908 93.066 -6.1757 20 8 4 0 0 0 0.0093064 1 65956 65956 83.429 25.707 1 117450000 59208 2602 39559 40443 68959 68959 0.09650906374031365 SLLSDASRDH 10 Unmodified _SLLSDASRDH_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2699584960938 2 550.770177 1099.5258 -0.39182 -0.0002158 3.6706 0.0020216 3.2788 0.0018058 550.7719929352028 36.589 0.295 36.339 36.132 36.427 -0.2497 21 13 2 0 0 0 0.23634 1 19134 19134 6.7232 0.99131 1 4442800 + 59209 19763 39560 40444 68960 68960 -0.0199812491848661 SLLSELQHA 9 Unmodified _SLLSELQHA_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2700500488281 2 499.269281 996.52401 0.74474 0.00037183 -0.25702 -0.00012832 0.48772 0.0002435 499.2696937918514 60.241 0.42548 60.241 60.068 60.494 0 62 18 4 0 0 0 0.0090948 1 33554 33554 85.272 23.915 1 19043000 59210 6326 39561 40445 68961 68961 0.02560866063561207 SLLSELQHA 9 Unmodified _SLLSELQHA_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2692565917969 2 499.269281 996.52401 0.32545 0.00016249 0.017473 8.7236E-06 0.34293 0.00017121 499.2692713523034 65.669 0.3769 59.493 59.266 59.643 -6.1757 38 21 2 0 0 0 0.011968 2 42682 42546;42682 74.929 21.377 1 30924000 59211 6326 39561 40445 68962;68963 68963 0.02560866063561207 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENSG00000116670|ENST00000376692|MAD2L2 ENSG00000116670|ENST00000376692|MAD2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2860107421875 2 513.284931 1024.55531 0.6104 0.00031331 -0.4786 -0.00024566 0.1318 6.7652E-05 513.2847299090816 57.222 0.34899 57.222 57.022 57.371 0 41 15 3 0 0 0 0.0044708 1 31799 31799 118.89 29.991 1 10551000 59212 3237 39562 40446 68964 68964 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENSG00000116670|ENST00000376692|MAD2L2 ENSG00000116670|ENST00000376692|MAD2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2843017578125 2 513.284931 1024.55531 0.32383 0.00016622 -0.26345 -0.00013523 0.060379 3.0991E-05 513.2850003353842 57.65 0.28481 57.161 57.003 57.288 -0.48974 31 13 3 0 0 0 0.0082475 1 31317 31317 92.653 23.548 1 6060700 59213 3237 39562 40446 68965 68965 0.04401439097682669 SLLSHVEQL 9 Unmodified _SLLSHVEQL_ 0 0 0 ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF ENSG00000116670|ENST00000376692|MAD2L2 ENSG00000116670|ENST00000376692|MAD2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2850341796875 2 513.284931 1024.55531 0.90925 0.00046671 0.59194 0.00030383 1.5012 0.00077054 513.2854505645566 63.588 0.35445 57.413 57.279 57.634 -6.1757 27 19 2 0 0 0 0.0086722 1 41140 41140 88.954 32.777 1 11885000 59214 3237 39562 40446 68966 68966 0.04401439097682669 SLLSLTSEEY 10 Unmodified _SLLSLTSEEY_ 0 0 0 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 ENSG00000100647|ENST00000342745|SUSD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2860717773438 2 571.284794 1140.55504 1.1403 0.00065144 -1.1998 -0.00068542 -0.05948 -3.398E-05 571.2850056722301 53.457 0.76654 47.653 47.453 48.219 -5.8042 155 48 4 0 0 0 0.33553 1 33714 33714 25.399 2.2509 1 174770000 59215 1861 39563 40447 68967 68967 -0.009620254128321903 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.5167236328125 1 989.514967 988.507691 0.27221 0.00026935 0.67567 0.00066859 0.94788 0.00093794 989.5156860287539 72.934 0.32173 72.934 72.779 73.101 0 33 14 3 0 0 0 0.031062 2 40563 40563;40664 54.774 0 1 3014800 59216 7963 39564 40448 68968;68969 68968 0.012977401068042127 SLLSNLDEV 9 Unmodified _SLLSNLDEV_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.26171875 2 495.261122 988.507691 0.4456 0.00022069 0.28522 0.00014126 0.73081 0.00036194 495.2614001702432 72.966 0.53828 72.966 72.611 73.149 0 65 25 4 0 0 0 0.013323 1 40620 40620 71.134 0 1 7573600 59217 7963 39564 40448 68970 68970 0.012977401068042127 SLLSSLSLS 9 Unmodified _SLLSSLSLS_ 0 0 0 REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF REV__ENST00000496961.5_1_1:110040563-110040815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.5142822265625 1 906.514239 905.506963 0.48336 0.00043817 0.38652 0.00035038 0.86988 0.00078855 906.5145377351824 79.955 0.15531 79.465 79.377 79.533 -0.48932 8 5 2 0 0 0 0.06187 1 43797 43797 42.095 0 1 560270 + 59218 27971 39565 40449 68971 68971 0.050429454577852084 SLLTEEDQLLE 11 Unmodified _SLLTEEDQLLE_ 0 0 0 REV__nc|ENSG00000043143|Q9NQC1-2|JADE2 REV__nc|ENSG00000043143|Q9NQC1-2|JADE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.3279418945312 2 645.32719 1288.63983 -0.21746 -0.00014033 0.22497 0.00014518 0.0075132 4.8484E-06 645.3272466161787 52.345 0.29137 52.345 52.175 52.467 0 38 12 4 0 0 0 0.68427 1 29034 29034 5.7319 0 1 13191000 + 59219 17211 39566 40450 68972 68972 0.007053003331066066 SLLTHFPSKA 10 Unmodified _SLLTHFPSKA_ 0 0 0 REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.8089599609375 2 550.808574 1099.60259 0.4047 0.00022291 0.23686 0.00013047 0.64156 0.00035338 550.8086207174367 40.188 0.33799 39.891 39.735 40.073 -0.29716 28 15 3 0 0 0 0.29752 1 21237 21237 27.629 2.2295 1 2726500 + 59220 28834 39567 40451 68973 68973 0.05677718368656315 SLLTHFPSKA 10 Unmodified _SLLTHFPSKA_ 0 0 0 REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF REV__ENST00000561173.5_1_1:197885422-197885647:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.2892456054688 2 550.808574 1099.60259 0.51076 0.00028133 1.042 0.00057392 1.5527 0.00085525 550.8087454930763 44.906 0.33818 40.054 39.863 40.202 -4.852 30 22 2 0 0 0 0.22154 1 27412 27412 16.149 0 1 9974800 + 59221 28834 39567 40451 68974 68974 0.05677718368656315 SLLTKIKSKKK 11 Unmodified _SLLTKIKSKKK_ 0 0 0 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.4313354492188 2 637.43193 1272.84931 NaN NaN NaN NaN NaN NaN NaN 17.553 1 17.559 17.059 18.059 0.0050564 0 0 0 0.9435 1 8859 8859 0 0 1 + 59222 21340 39568 40452 68975 68975 0.2237963286752347 SLLTKILRLH 10 Unmodified _SLLTKILRLH_ 0 0 0 REV__ENSG00000162402|ENST00000294383|USP24 REV__ENSG00000162402|ENST00000294383|USP24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.8925170898438 2 597.390065 1192.76558 1.087 0.00064934 -1.288 -0.00076941 -0.20099 -0.00012007 597.3889985542345 107.51 0.1366 101.34 101.24 101.37 -6.1757 30 22 2 0 0 0 0.24008 1 71866 71866 0.40072 0 1 1505800 + 59223 21641 39569 40453 68976 68976 0.17690521490499123 SLLTQQPSLG 10 Unmodified _SLLTQQPSLG_ 0 0 0 REV__nc|ENSG00000261832|Q13286-7|CLN3 REV__nc|ENSG00000261832|Q13286-7|CLN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1044.077026367188 1 1043.57315 1042.56587 0.53092 0.00055405 -1.5147 -0.0015807 -0.98381 -0.0010267 1044.573248035106 29.77 0.047251 29.689 29.663 29.71 -0.080429 4 2 2 0 0 0 0.23634 1 15438 15438 6.7232 0 1 9962300 + 59224 23719 39570 40454 68977 68977 0.04629421752088092 SLLTSTVQV 9 Unmodified _SLLTSTVQV_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2744140625 2 474.274032 946.533512 0.14312 6.7877E-05 -0.32619 -0.0001547 -0.18307 -8.6827E-05 474.27386251213335 61.904 0.3432 61.904 61.728 62.072 0 36 14 3 0 0 0 0.052168 2 34581 34472;34581 44.407 8.3628 1 6610100 59225 4751 39571 40455 68978;68979 68979 0.058106343490862855 SLLTSTVQV 9 Unmodified _SLLTSTVQV_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2743225097656 2 474.274032 946.533512 0.80893 0.00038366 -0.35446 -0.00016811 0.45447 0.00021554 474.2737182372379 62.414 0.37708 61.926 61.704 62.081 -0.48764 59 17 5 0 0 0 0.010877 2 33937 33937;34043 77.984 10.64 1 21201000 59226 4751 39571 40455 68980;68981 68980 0.058106343490862855 SLLTSTVQV 9 Unmodified _SLLTSTVQV_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.5396728515625 1 947.540788 946.533512 0.62244 0.00058979 -0.80218 -0.0007601 -0.17974 -0.00017031 947.5402282227114 62.392 0.23143 61.904 61.788 62.019 -0.48764 17 10 2 0 0 0 0.06187 1 33970 33970 42.095 0 1 1808800 59227 4751 39571 40455 68982 68982 0.058106343490862855 SLLTSTVQV 9 Unmodified _SLLTSTVQV_ 0 0 0 nc|ENSG00000135899|Q9HB58-5|SP110;nc|ENSG00000135899|Q9HB58-3|SP110;nc|ENSG00000135899|Q9HB58-7|SP110;nc|ENSG00000135899|Q9HB58|SP110;ENSG00000135899|ENST00000258381|SP110;ENST00000486146.2_1_2:231068050-231077551:-|nuORF;nc|ENSG00000135899|Q9HB58-2|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 nc|ENSG00000135899|Q9HB58-5|SP110 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2746887207031 2 474.274032 946.533512 0.69508 0.00032966 0.3276 0.00015537 1.0227 0.00048503 474.27415253950676 69.768 0.58018 63.593 63.281 63.862 -6.1757 62 31 3 0 0 0 0.012148 2 45592 45472;45592 74.423 0 1 106480000 59228 4751 39571 40455 68983;68984 68984 0.058106343490862855 SLLVDKYIF 9 Unmodified _SLLVDKYIF_ 0 0 0 ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF ENSG00000169621|ENST00000303795|APLF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2886352539062 2 549.3157 1096.61685 0.28623 0.00015723 -1.3466 -0.0007397 -1.0604 -0.00058247 549.8160099441499 69.852 0.1087 69.852 69.754 69.863 0 5 4 2 0 0 0 0.19613 1 38910 38910 12.532 0 1 396430 59229 7893 39572 40456 68985 68985 0.07240370796921525 SLLVGRVPLQ 10 Unmodified _SLLVGRVPLQ_ 0 0 0 nc|ENSG00000102780|Q86XP1-5|DGKH;nc|ENSG00000102780|Q86XP1-3|DGKH;nc|ENSG00000102780|Q86XP1-2|DGKH;ENSG00000102780|ENST00000337343|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH nc|ENSG00000102780|Q86XP1-5|DGKH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.3043212890625 2 541.340041 1080.66553 0.94008 0.0005089 -0.53802 -0.00029125 0.40206 0.00021765 541.8412640096872 90.479 0.32384 84.303 84.219 84.543 -6.1757 22 18 2 0 0 0 0.20412 1 59782 59782 22.736 0 1 10094000 59230 2064 39573 40457 68986 68986 0.1284228415670441 SLLVKRTPR 9 Unmodified _SLLVKRTPR_ 0 0 0 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 ENSG00000165704|ENST00000298556|HPRT1 MSMS AL20221201_MKP_PDAC_01 4 535.3463134765625 2 535.345658 1068.67676 NaN NaN NaN NaN NaN NaN NaN 105.1 1 98.92 98.42 99.42 -6.1757 0 0 0 0.86004 1 70386 70386 0 0 1 59231 7379 39574 40458 68987 68987 0.14517106250832512 SLLYNVPAV 9 Unmodified _SLLYNVPAV_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2794799804688 2 488.279118 974.543683 0.83599 0.0004082 -0.084083 -4.1056E-05 0.75191 0.00036714 488.27902831378657 73.435 0.49213 72.959 72.674 73.166 -0.47588 61 21 4 0 0 0 0.0090851 2 40216 40116;40216 85.357 14.641 1 15137000 59232 5399 39575 40459 68988;68989 68989 0.05539242074326012 SLLYNVPAV 9 Unmodified _SLLYNVPAV_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.552490234375 1 975.550959 974.543683 0.59065 0.00057621 1.2051 0.0011757 1.7958 0.0017519 975.5520880975942 73.482 0.28812 73.006 72.804 73.092 -0.47588 26 12 3 0 0 0 0.031062 1 40148 40148 54.774 18.729 1 1789700 59233 5399 39575 40459 68990 68990 0.05539242074326012 SLLYNVPAV 9 Unmodified _SLLYNVPAV_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2796325683594 2 488.279118 974.543683 0.97218 0.0004747 0.40017 0.00019539 1.3723 0.00067009 488.2792671421438 81.211 0.95122 75.036 74.296 75.247 -6.1757 97 53 3 0 0 0 0.012148 3 53300 53173;53300;53438 74.423 14.033 1 70483000 59234 5399 39575 40459 68991;68992;68993 68992 0.05539242074326012 SLLYNVPAV 9 Unmodified _SLLYNVPAV_ 0 0 0 nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-11|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP nc|ENSG00000142192|P05067-10|APP nc|ENSG00000142192|P05067-10|APP MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.5504150390625 1 975.550959 974.543683 0.7323 0.0007144 0.2556 0.00024936 0.98791 0.00096375 975.5512031562171 81.167 0.28802 74.992 74.845 75.133 -6.1757 27 16 2 0 0 0 0.0082661 2 53321 53192;53321 92.491 28.255 1 13391000 59235 5399 39575 40459 68994;68995 68995 0.05539242074326012 SLLYPYSRI 9 Unmodified _SLLYPYSRI_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3118286132812 2 556.310949 1110.60735 0.49685 0.00027641 0.79424 0.00044184 1.2911 0.00071825 556.3112503063904 51.027 0.20086 50.614 50.518 50.718 -0.41351 21 9 3 0 0 0 0.39143 1 27542 27542 18.146 18.146 1 3481600 + 59236 18438 39576 40460 68996 68996 0.05646602511410492 SLMDDMTAT 9 Unmodified _SLMDDMTAT_ 0 0 0 REV__nc|ENSG00000117713|O14497-3|ARID1A REV__nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7040100097656 2 492.704268 983.393983 -0.0063828 -3.1448E-06 -0.27979 -0.00013785 -0.28617 -0.000141 492.7038886234882 56.779 0.38785 56.294 56.136 56.523 -0.48554 29 18 2 0 0 0 0.55144 1 30958 30958 4.3292 0 1 2593700 + 59237 16730 39577 40461 68997 68997 -0.09837814322099803 SLMDHTIPEV 10 Oxidation (M) _SLM(Oxidation (M))DHTIPEV_ SLM(1)DHTIPEV SLM(72)DHTIPEV 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.27978515625 2 579.278989 1156.54342 -0.20424 -0.00011831 0.97117 0.00056258 0.76693 0.00044427 579.2798010854581 44.974 0.2079 44.974 44.867 45.075 0 21 10 3 0 0 0 0.024115 1 24485 24485 71.922 33.948 1 12185000 59238 4949 39578 40462 68998 68998 900 -0.028585457078634136 SLMDHTIPEV 10 Oxidation (M) _SLM(Oxidation (M))DHTIPEV_ SLM(1)DHTIPEV SLM(50)DHTIPEV 0 0 1 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2789306640625 2 579.278989 1156.54342 NaN NaN NaN NaN NaN NaN NaN 45.411 1 45.411 44.911 45.911 0 0 0 0 0.11618 1 24752 24752 49.933 15.831 1 59239 4949 39578 40462 68999 68999 900 -0.028585457078634136 SLMDHTIPEV 10 Unmodified _SLMDHTIPEV_ 0 0 0 nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP nc|ENSG00000137575|O00560-3|SDCBP nc|ENSG00000137575|O00560-3|SDCBP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.232177734375 2 571.281531 1140.54851 1.4338 0.00081911 0.77322 0.00044172 2.207 0.0012608 571.2819245401998 64.483 0.5495 58.308 58.221 58.77 -6.1757 42 30 2 0 0 0 0.17211 1 42115 42115 29.082 3.6823 1 28324000 59240 4949 39578 40463 69000 69000 -0.016142418452318452 SLMDLQERL 9 Oxidation (M) _SLM(Oxidation (M))DLQERL_ SLM(1)DLQERL SLM(48)DLQERL 0 0 1 nc|ENSG00000109689|Q9P246-2|STIM2;nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7865600585938 2 560.786981 1119.55941 0.71192 0.00039924 0.39594 0.00022204 1.1079 0.00062128 560.7869882960479 49.409 0.15335 49.409 49.333 49.487 0 13 6 3 0 0 0 0.044296 1 27194 27194 47.594 22.603 1 3449400 59241 16113 39579 40464 69001 69001 1794 0.004411605290670195 SLMDLTLLL 9 Oxidation (M) _SLM(Oxidation (M))DLTLLL_ SLM(1)DLTLLL SLM(78)DLTLLL 0 0 1 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7943725585938 2 517.793743 1033.57293 1.05 0.0005437 -0.75781 -0.00039239 0.29222 0.00015131 517.7934749267664 101.27 0.1445 95.099 95.018 95.163 -6.1757 15 8 2 0 0 0 0.010877 1 67955 67955 77.984 31.063 1 10241000 59242 5350 39580 40465 69002 69002 985 0.057490183083018565 SLMDLTLLL 9 Unmodified _SLMDLTLLL_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000571796.5_1_17:80869637-80887508:+|nuORF ENSG00000141556|ENST00000355528|TBCD ENSG00000141556|ENST00000355528|TBCD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.8210144042969 2 509.796286 1017.57802 0.84118 0.00042883 1.1146 0.00056823 1.9558 0.00099706 509.7966488697138 102.35 0.10374 96.17 96.114 96.218 -6.1757 18 7 3 0 0 0 0.18521 1 68694 68694 16.942 3.4344 1 11566000 59243 5350 39580 40466 69003 69003 0.06993322170922056 SLMGTVFLL 9 Unmodified _SLMGTVFLL_ 0 0 0 ENSG00000156671|ENST00000542569|SAMD8;nc|ENSG00000156671|Q96LT4-2|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 ENSG00000156671|ENST00000542569|SAMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 981.5538940429688 1 980.548516 979.54124 0.60369 0.00059195 -0.2765 -0.00027112 0.32719 0.00032083 980.5479891805181 101.7 0.10162 95.529 95.443 95.545 -6.1757 7 4 2 0 0 0 0.052168 1 68258 68258 44.407 26.272 1 7830400 59244 6473 39581 40467 69004 69004 0.05065070345028744 SLMHSDSEL 9 Unmodified _SLMHSDSEL_ 0 0 0 KIAA0319L|p.E1004D|1|0.23|ENSG00000142687|chr1:35435032-35435032|C/A|missense_variant KIAA0319L|p.E1004D|1|0.23|ENSG00000142687|chr1:35435032-35435032|C/A|missense_variant KIAA0319L|p.E1004D|1|0.23|ENSG00000142687|chr1:35435032-35435032|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2627258300781 2 509.729132 1017.44371 0.56021 0.00028556 1.9156 0.00097645 2.4758 0.001262 509.73047547217334 47.368 0.17345 47.368 47.231 47.405 0 9 7 2 0 0 0 0.20727 1 25920 25920 7.9102 2.1497 1 621880 59245 15938 39582 40468 69005 69005 -0.06431363321780736 SLMMTIINL 9 2 Oxidation (M) _SLM(Oxidation (M))M(Oxidation (M))TIINL_ SLM(1)M(1)TIINL SLM(67)M(67)TIINL 0 0 2 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.27783203125 2 534.277403 1066.54025 0.65378 0.0003493 0.18401 9.8314E-05 0.8378 0.00044762 534.2778105439598 73.959 0.36734 73.483 73.299 73.667 -0.47588 40 17 3 0 0 0 0.016184 1 40516 40516 67.344 38.857 1 2935700 59246 4347 39583 40469 69006 69006 786;787 0.009644879138022588 SLMMTIINL 9 2 Oxidation (M) _SLM(Oxidation (M))M(Oxidation (M))TIINL_ SLM(1)M(1)TIINL SLM(48)M(48)TIINL 0 0 2 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.277587890625 2 534.277403 1066.54025 NaN NaN NaN NaN NaN NaN NaN 74.424 1 73.948 73.448 74.448 -0.47588 0 0 0 0.080768 1 40733 40733 48.346 14.243 1 59247 4347 39583 40469 69007 69007 786;787 0.009644879138022588 SLMMTIINL 9 2 Oxidation (M) _SLM(Oxidation (M))M(Oxidation (M))TIINL_ SLM(1)M(1)TIINL SLM(42)M(42)TIINL 0 0 2 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.27783203125 2 534.277403 1066.54025 0.31714 0.00016944 0.46427 0.00024805 0.78141 0.00041749 534.2776171895412 73.895 0.45206 73.939 73.781 74.233 0.043983 47 20 3 0 0 0 0.06187 2 40720 40720;40831 42.095 20.348 1 3490600 59248 4347 39583 40469 69008;69009 69008 786;787 0.009644879138022588 SLMMTIINL 9 Oxidation (M) _SLMM(Oxidation (M))TIINL_ SLM(0.199)M(0.801)TIINL SLM(-6.1)M(6.1)TIINL 0 0 1 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2802734375 2 526.279946 1050.54534 1.7389 0.00091516 -1.3769 -0.00072463 0.36202 0.00019052 526.2795403138311 93.098 0.25533 93.121 92.959 93.214 0.02298 18 9 3 0 0 0 0.06187 1 51779 51779 42.095 18.946 2 1598600 59249 4347 39583 40470 69010 69010 786;787 0.022087917764110898 SLMMTIINL 9 Oxidation (M) _SLMM(Oxidation (M))TIINL_ SLM(0.192)M(0.808)TIINL SLM(-6.3)M(6.3)TIINL 0 0 1 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2811279296875 2 526.279946 1050.54534 1.8566 0.00097712 1.2491 0.00065736 3.1057 0.0016345 526.2807506142854 93.835 0.29546 93.858 93.667 93.963 0.022987 27 11 3 0 0 0 0.042911 1 52145 52145 48.346 22.947 2 2388900 59250 4347 39583 40470 69011 69011 786;787 0.022087917764110898 SLMQRLRN 8 Unmodified _SLMQRLRN_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1018.063171386719 1 1017.56221 1016.55493 0.55594 0.00056571 -0.28272 -0.00028768 0.27323 0.00027803 1018.5646908193189 56.406 0.27394 50.429 50.375 50.649 -5.9769 17 15 2 0 0 0 8.7369 1 36066 36066 2.3027 0 1 13060000 59251 2211 39584 40471 69012 69012 0.04731740896829706 SLMSHAIEL 9 Oxidation (M) _SLM(Oxidation (M))SHAIEL_ SLM(1)SHAIEL SLM(64)SHAIEL 0 0 1 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2591552734375 2 508.757692 1015.50083 -0.09171 -4.6658E-05 1.9174 0.00097547 1.8257 0.00092881 508.75892051099004 44.997 0.34162 44.997 44.847 45.189 0 40 14 4 0 0 0 0.019303 1 24469 24469 64.236 28.109 1 43193000 59252 4894 39585 40472 69013 69013 889 -0.00629896045404621 SLMSHAIEL 9 Oxidation (M) _SLM(Oxidation (M))SHAIEL_ SLM(1)SHAIEL SLM(100)SHAIEL 0 0 1 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7579345703125 2 508.757692 1015.50083 0.10327 5.2538E-05 -0.19016 -9.6745E-05 -0.086893 -4.4208E-05 508.7576996245825 45.314 0.29693 45.314 45.132 45.429 0 39 15 4 0 0 0 0.00856 1 24685 24685 100.37 56.513 1 45670000 59253 4894 39585 40472 69014 69014 889 -0.00629896045404621 SLMSHAIEL 9 Oxidation (M) _SLM(Oxidation (M))SHAIEL_ SLM(1)SHAIEL SLM(82)SHAIEL 0 0 1 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7586364746094 2 508.757692 1015.50083 -0.27929 -0.00014209 0.36108 0.0001837 0.081788 4.161E-05 508.7574377026458 45.406 0.14875 45.082 45.046 45.195 -0.32425 11 8 2 0 0 0 0.0095811 1 24304 24304 81.613 45.486 1 7885800 59254 4894 39585 40472 69015 69015 889 -0.00629896045404621 SLMSHAIEL 9 Oxidation (M) _SLM(Oxidation (M))SHAIEL_ SLM(1)SHAIEL SLM(82)SHAIEL 0 0 1 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.758544921875 2 508.757692 1015.50083 0.93635 0.00047638 -1.02 -0.00051895 -0.08369 -4.2578E-05 508.75727486743364 50.562 0.29657 45.023 44.839 45.136 -5.5391 32 18 2 0 0 0 0.0095811 1 31720 31720 81.613 45.486 1 29477000 59255 4894 39585 40472 69016 69016 889 -0.00629896045404621 SLMSHAIEL 9 Unmodified _SLMSHAIEL_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7607116699219 2 500.760235 999.505917 0.643 0.00032199 -0.64438 -0.00032268 -0.0013753 -6.8867E-07 500.76005890228544 57.728 0.23643 57.728 57.633 57.869 0 23 10 3 0 0 0 0.41742 1 32157 32157 11.64 3.047 1 2007300 59256 4894 39585 40473 69017 69017 0.0061440781720421 SLMSHAIEL 9 Unmodified _SLMSHAIEL_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7599182128906 2 500.760235 999.505917 0.029519 1.4782E-05 -0.31667 -0.00015857 -0.28715 -0.00014379 500.76007637187774 58.17 0.26352 57.68 57.556 57.819 -0.48974 26 12 3 0 0 0 0.031062 1 31611 31611 54.774 27.89 1 5561600 59257 4894 39585 40473 69018 69018 0.0061440781720421 SLMSHAIEL 9 Unmodified _SLMSHAIEL_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.31640625 2 500.760235 999.505917 1.4963 0.00074931 0.0087594 4.3863E-06 1.5051 0.0007537 500.7601846125533 63.966 0.49338 57.79 57.543 58.036 -6.1757 78 26 4 0 0 0 0.081537 1 41452 41452 42.095 42.095 1 80716000 59258 4894 39585 40473 69019 69019 0.0061440781720421 SLMSWSAIL 9 Oxidation (M) _SLM(Oxidation (M))SWSAIL_ SLM(1)SWSAIL SLM(60)SWSAIL 0 0 1 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2625732421875 2 512.26261 1022.51067 0.076264 3.9067E-05 -0.03338 -1.71E-05 0.042884 2.1968E-05 512.2626366842194 85 0.23494 85.063 84.954 85.189 0.063171 24 9 3 0 0 0 0.023164 1 47053 47053 60.39 30.165 1 36856000 59259 3962 39586 40474 69020 69020 708 0.00031291959987811424 SLMSWSAIL 9 Oxidation (M) _SLM(Oxidation (M))SWSAIL_ SLM(1)SWSAIL SLM(78)SWSAIL 0 0 1 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2631225585938 2 512.26261 1022.51067 0.058202 2.9814E-05 0.60221 0.00030849 0.66041 0.0003383 512.2628781742983 85.291 0.32656 85.353 85.187 85.514 0.061638 28 12 3 0 0 0 0.010877 1 47205 47205 77.984 33.577 1 30628000 59260 3962 39586 40474 69021 69021 708 0.00031291959987811424 SLMSWSAIL 9 Oxidation (M) _SLM(Oxidation (M))SWSAIL_ SLM(1)SWSAIL SLM(78)SWSAIL 0 0 1 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2635498046875 2 512.26261 1022.51067 1.1231 0.00057535 0.80861 0.00041422 1.9318 0.00098957 512.262569917842 96.184 1.3462 90.008 89.481 90.827 -6.1757 277 81 5 0 0 0 0.010877 7 64148 63478;63649;63774;63901;64023;64148;64272 77.984 33.577 1 69512000 59261 3962 39586 40474 69022;69023;69024;69025;69026;69027;69028 69027 708 0.00031291959987811424 SLMSWSAIL 9 Oxidation (M) _SLM(Oxidation (M))SWSAIL_ SLM(1)SWSAIL SLM(64)SWSAIL 0 0 1 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1023.518493652344 1 1023.51794 1022.51067 1.0505 0.0010752 0.74957 0.0007672 1.8001 0.0018424 1023.5173671481502 96.424 1.073 90.248 89.601 90.674 -6.1757 140 64 3 0 0 0 0.019303 1 64076 64076 64.236 13.381 1 23423000 59262 3962 39586 40474 69029 69029 708 0.00031291959987811424 SLMSWSAIL 9 Unmodified _SLMSWSAIL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7738037109375 2 504.265153 1006.51575 1.5114 0.00076214 0.7077 0.00035687 2.2191 0.001119 504.26502549057295 100.98 0.16803 94.805 94.701 94.869 -6.1757 26 9 5 0 0 0 0.12841 1 67639 67639 30.225 1.738 1 500500000 59263 3962 39586 40475 69030 69030 0.012755958225966424 SLMTHLCCI 9 Unmodified _SLMTHLCCI_ 0 0 0 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7376403808594 2 510.737391 1019.46023 0.4836 0.00024699 -0.26725 -0.0001365 0.21635 0.0001105 510.73738575021895 59.452 0.40932 59.452 59.217 59.627 0 53 17 4 0 0 0 0.16785 1 33213 33213 23.148 0 1 24560000 + 59264 19171 39587 40476 69031 69031 -0.04872276961032185 SLMTHWPAA 9 Unmodified _SLMTHWPAA_ 0 0 0 ENST00000541704.2_1_12:109549217-109563236:+|nuORF ENST00000541704.2_1_12:109549217-109563236:+|nuORF ENST00000541704.2_1_12:109549217-109563236:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2465209960938 2 507.247295 1012.48004 NaN NaN NaN NaN NaN NaN NaN 34.683 1 34.683 34.183 35.183 0 0 0 0 0.7453 1 18291 18291 7.9102 1.187 1 59265 15050 39588 40477 69032 69032 -0.0257044163441833 SLMVARSIL 9 Unmodified _SLMVARSIL_ 0 0 0 nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L nc|ENSG00000011243|Q9ULX6-2|AKAP8L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2945251464844 2 495.294245 988.573937 0.93369 0.00046245 -1.5576 -0.00077148 -0.62393 -0.00030903 495.2933939910614 49.974 0.41787 49.582 49.412 49.83 -0.3923 43 20 3 0 0 0 0.094149 1 26961 26961 34.402 0.21439 1 5539400 59266 16019 39589 40478 69033 69033 0.07919277467874508 SLMVFHSSF 9 Unmodified _SLMVFHSSF_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.82470703125 2 527.754953 1053.49535 0.40048 0.00021136 1.4285 0.00075388 1.829 0.00096524 527.7552350522619 48.062 0.21628 48.023 47.967 48.184 -0.038643 15 10 2 0 0 0 0.19891 1 26002 26002 11.64 1.4569 1 1112500 59267 9628 39590 40479 69034 69034 -0.02925574837217937 SLMVKRLRN 9 Unmodified _SLMVKRLRN_ 0 0 0 ENST00000437629.6_2_10:88856696-88911209:+|nuORF ENST00000437629.6_2_10:88856696-88911209:+|nuORF ENST00000437629.6_2_10:88856696-88911209:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 372.8942260742188 3 372.893854 1115.65973 NaN NaN NaN NaN NaN NaN NaN 27.491 1 24.455 23.955 24.955 -3.0365 0 0 0 0.41144 1 15238 15238 19.362 4.1135 1 59268 13353 39591 40480 69035 69035 0.1065286237339933 SLMVQGEQAF 10 Unmodified _SLMVQGEQAF_ 0 0 0 ENST00000547799.5_1_12:48112970-48113414:+|nuORF;ENST00000552502.1_1_12:48112970-48114117:+|nuORF ENST00000547799.5_1_12:48112970-48113414:+|nuORF ENST00000547799.5_1_12:48112970-48113414:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7943725585938 2 555.268424 1108.5223 0.98039 0.00054438 -3.4068 -0.0018917 -2.4264 -0.0013473 555.2661398339912 73.999 0.3126 67.823 67.684 67.997 -6.1757 18 15 2 0 0 0 0.22149 1 48384 48384 10.074 2.1638 1 11122000 59269 15129 39592 40481 69036 69036 -0.027625110166809463 SLNALLGV 8 Unmodified _SLNALLGV_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.73876953125 2 393.739628 785.464704 NaN NaN NaN NaN NaN NaN NaN 67.984 1 67.502 67.002 68.002 -0.48218 0 0 0 0.80403 1 37148 37148 23.148 0 1 + 59270 17027;28463 39593 40482 69037 69037 0.0633901484004582 SLNCFSFSF 9 Unmodified _SLNCFSFSF_ 0 0 0 ENST00000604689.1_1_6:112397138-112397468:-|nuORF ENST00000604689.1_1_6:112397138-112397468:-|nuORF ENST00000604689.1_1_6:112397138-112397468:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2293701171875 2 526.23131 1050.44807 NaN NaN NaN NaN NaN NaN NaN 54.171 1 54.171 53.671 54.671 0 0 0 0 0.82396 1 30061 30061 4.756 0 1 59271 15841 39594 40483 69038 69038 -0.07513854108219675 SLNEELCL 8 Unmodified _SLNEELCL_ 0 0 0 REV__nc|ENSG00000163362|Q3KP66|INAVA REV__nc|ENSG00000163362|Q3KP66|INAVA MSMS AL20221201_MKP_PDAC_01 4 460.7242736816406 2 460.723318 919.432083 NaN NaN NaN NaN NaN NaN NaN 83.007 1 76.831 76.331 77.331 -6.1757 0 0 0 0.80403 1 54557 54557 23.148 5.0134 1 + 59272 21754 39595 40484 69039 69039 -0.030855603451186653 SLNELRVLL 9 Unmodified _SLNELRVLL_ 0 0 0 ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.8238525390625 2 528.824224 1055.63389 0.46755 0.00024725 0.10455 5.5291E-05 0.5721 0.00030254 528.824250510805 75.818 0.24707 75.341 75.19 75.437 -0.47714 16 10 2 0 0 0 0.15471 1 41514 41514 27.629 12.791 1 899010 59273 2450 39596 40485 69040 69040 0.10830291402771763 SLNELRVLL 9 Unmodified _SLNELRVLL_ 0 0 0 ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.8238525390625 2 528.824224 1055.63389 1.2865 0.00068035 -0.9652 -0.00051042 0.32133 0.00016993 528.8240308741686 95.941 0.27754 89.766 89.63 89.907 -6.1757 32 16 3 0 0 0 0.021948 1 63507 63507 61.602 11.669 1 14177000 59274 2450 39596 40485 69041 69041 0.10830291402771763 SLNELRVLL 9 Unmodified _SLNELRVLL_ 0 0 0 ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 ENSG00000106665|ENST00000223398|CLIP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 528.824224 1055.63389 0.21467 0.00011352 -1.1508 -0.00060855 -0.93609 -0.00049503 528.8244577926375 75.276 0.2494 75.321 75.203 75.452 0.045959 -0.0095161 -0.00092675 NaN 27.629 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1378700 59275 2450 39596 40485 0.10830291402771763 SLNEQIALV 9 Unmodified _SLNEQIALV_ 0 0 0 nc|ENSG00000107897|Q5T8D3-2|ACBD5;ENSG00000107897|ENST00000396271|ACBD5;nc|ENSG00000107897|Q5T8D3|ACBD5;nc|ENSG00000107897|Q5T8D3-4|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 nc|ENSG00000107897|Q5T8D3-2|ACBD5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2034301757812 2 493.779482 985.544411 0.12065 5.9574E-05 0.70158 0.00034643 0.82223 0.000406 493.78015586682244 64.232 0.27396 64.232 64.071 64.345 0 19 11 2 0 0 0 0.19891 1 35772 35772 11.64 0 1 961130 59276 2529 39597 40486 69042 69042 0.051060367233731085 SLNERDYRDRR 11 Unmodified _SLNERDYRDRR_ 0 0 0 ENST00000520878.5_1_5:178045553-178050259:-|nuORF;ENST00000520126.1_1_5:178045553-178054033:-|nuORF;ENST00000520199.5_1_5:178044267-178054033:-|nuORF;ENSG00000113240|ENST00000316308|CLK4 ENST00000520878.5_1_5:178045553-178050259:-|nuORF ENST00000520878.5_1_5:178045553-178050259:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.919677734375 3 493.918555 1478.73384 0.2449 0.00012096 1.5898 0.00078524 1.8347 0.0009062 494.2535392382161 26.223 0.27705 23.272 23.112 23.39 -2.9511 35 15 3 0 0 0 0.72311 1 14495 14495 2.084 0.62885 1 12151000 59277 2948 39598 40487 69043 69043 0.013618769985669132 SLNESPCH 8 Unmodified _SLNESPCH_ 0 0 0 REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.6898193359375 2 443.68981 885.365066 NaN NaN NaN NaN NaN NaN NaN 52.107 1 52.107 51.607 52.607 0 0 0 0 0.97444 1 28823 28823 4.756 1.8668 1 + 59278 25043 39599 40488 69044 69044 -0.08220170836216312 SLNESPCH 8 Unmodified _SLNESPCH_ 0 0 0 REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF REV__ENST00000263208.5_1_22:19349323-19349386:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.6898193359375 2 443.68981 885.365066 -0.047217 -2.095E-05 0.74657 0.00033124 0.69935 0.0003103 443.69008580758367 51.973 0.35129 51.973 51.777 52.129 0 33 15 3 0 0 0 8.7369 1 28823 28823 4.756 1.8668 1 10609000 + 59279 25043 39599 40488 69045 69045 -0.08220170836216312 SLNEVDHSYL 10 Unmodified _SLNEVDHSYL_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8565979003906 3 392.855899 1175.54587 0.44684 0.00017555 0.63623 0.00024995 1.0831 0.00042549 392.85624569425295 64.898 0.27928 64.414 64.254 64.533 -0.48428 32 12 3 0 0 0 0.69385 1 35381 35381 3.5871 3.5871 1 2739700 59280 4286 39600 40489 69046 69046 -0.03488373978530035 SLNEVDHSYL 10 Unmodified _SLNEVDHSYL_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.855899 1175.54587 0.44684 0.00017555 0.63623 0.00024995 1.0831 0.00042549 392.85624569425295 64.898 0.27928 64.414 64.254 64.533 -0.48428 0.022487 0.00018215 NaN 3.5871 32 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2739700 59281 4286 39600 40489 -0.03488373978530035 SLNEVDHSYL 10 Unmodified _SLNEVDHSYL_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 392.855899 1175.54587 0.70479 0.00027688 0.10248 4.0261E-05 0.80728 0.00031714 392.85593549859055 64.38 0.15234 64.369 64.318 64.47 -0.010536 -0.022487 -0.00044691 NaN 3.5871 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2218400 59282 4286 39600 40489 -0.03488373978530035 SLNFRFGFHI 10 Unmodified _SLNFRFGFHI_ 0 0 0 REV__ENSG00000165899|ENST00000547103|OTOGL REV__ENSG00000165899|ENST00000547103|OTOGL MSMS AL20221201_MKP_PDAC_01 4 619.325439453125 2 619.327465 1236.64038 NaN NaN NaN NaN NaN NaN NaN 98.758 1 92.582 92.082 93.082 -6.1757 0 0 0 0.85122 1 65559 65559 10.074 0.6908 1 + 59283 22060 39601 40490 69047 69047 0.03152229354145675 SLNHRKENAI 10 Unmodified _SLNHRKENAI_ 0 0 0 REV__ENSG00000169594|ENST00000345382|BNC1 REV__ENSG00000169594|ENST00000345382|BNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5510864257812 3 394.551033 1180.63127 -0.53442 -0.00021086 -0.081725 -3.2245E-05 -0.61615 -0.0002431 394.5509914998407 17.972 0.13247 17.986 17.913 18.045 0.013866 39 21 2 0 0 0 0.65282 1 8956 8956 4.7159 0.87001 1 4015800 + 59284 22408 39602 40491 69048 69048 0.04817835997801012 SLNIITVTL 9 Unmodified _SLNIITVTL_ 0 0 0 ENSG00000004975|ENST00000005340|DVL2;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENST00000572285.5_1_17:7132676-7132733:-|nuORF;ENSG00000161202|ENST00000313143|DVL3;nc|ENSG00000161202|Q92997-2|DVL3 ENSG00000004975|ENST00000005340|DVL2;ENSG00000161202|ENST00000313143|DVL3 ENSG00000161202|ENST00000313143|DVL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.3002014160156 2 487.30005 972.585547 0.89748 0.00043734 0.43677 0.00021284 1.3343 0.00065018 487.3002912900434 59.711 0.31534 53.597 53.412 53.727 -6.1147 26 17 2 0 0 0 0.023481 1 38330 38330 60.074 7.8056 1 33544000 59285 292;6786 39603 40492 69049 69049 0.09815797762848888 SLNISNRNIL 10 Unmodified _SLNISNRNIL_ 0 0 0 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 ENSG00000104237|ENST00000220676|RP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2220458984375 3 381.887533 1142.64077 -0.39165 -0.00014956 0.099201 3.7883E-05 -0.29244 -0.00011168 381.88767677298006 21.91 0.1585 21.91 21.829 21.988 0 32 20 2 0 0 0 0.67459 1 11134 11134 3.0723 0.44103 1 1423200 59286 2189 39604 40493 69050 69050 0.07515604283344146 SLNKIQLFL 9 Unmodified _SLNKIQLFL_ 0 0 0 REV__ENST00000545025.1_1_12:64878063-64878165:+|nuORF REV__ENST00000545025.1_1_12:64878063-64878165:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2939453125 2 538.329142 1074.64373 0.36947 0.00019889 -0.074401 -4.0052E-05 0.29507 0.00015884 538.3290199771087 86.236 0.28757 85.733 85.595 85.883 -0.50318 19 11 2 0 0 0 0.18882 1 47148 47148 15.847 0 1 502720 + 59287 28643 39605 40494 69051 69051 0.10939479408125408 SLNKQTVVERT 11 Unmodified _SLNKQTVVERT_ 0 0 0 REV__nc|ENSG00000040933|Q96PE3-4|INPP4A REV__nc|ENSG00000040933|Q96PE3-4|INPP4A MSMS AL20221201_MKP_PDAC_01 4 637.8546752929688 2 637.856783 1273.69901 NaN NaN NaN NaN NaN NaN NaN 84.462 1 78.286 77.786 78.786 -6.1757 0 0 0 0.75116 1 55566 55566 14.405 0 1 + 59288 29489 39606 40495 69052 69052 0.07311241137927027 SLNLDIQAL 9 Unmodified _SLNLDIQAL_ 0 0 0 ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3 ENSG00000119508|ENST00000395097|NR4A3 ENSG00000119508|ENST00000395097|NR4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7791748046875 2 493.779482 985.544411 0.15103 7.4576E-05 -0.18612 -9.1902E-05 -0.035087 -1.7325E-05 493.7795429936051 79.954 0.29211 79.954 79.797 80.089 0 32 15 3 0 0 0 0.48152 1 44451 44451 8.5933 0 1 1459100 59289 3439 39607 40496 69053 69053 0.0510603672336174 SLNLQFCSCP 10 Unmodified _SLNLQFCSCP_ 0 0 0 ENST00000552266.1_1_12:56504974-56505028:+|nuORF ENST00000552266.1_1_12:56504974-56505028:+|nuORF ENST00000552266.1_1_12:56504974-56505028:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2704467773438 2 556.249177 1110.4838 NaN NaN NaN NaN NaN NaN NaN 92.98 1 92.98 92.48 93.48 0 0 0 0 0.99248 1 51411 51411 1.4819 0.68827 1 59290 15177 39608 40497 69054 69054 -0.067021399228679 SLNNLHFG 8 Unmodified _SLNNLHFG_ 0 0 0 REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.23046875 2 451.229959 900.445365 0.71124 0.00032093 0.9902 0.00044681 1.7014 0.00076774 451.23032160890955 59.394 0.60312 59.341 58.971 59.574 -0.053062 58 30 3 0 0 0 0.80044 1 32282 32282 6.3541 1.1234 1 21990000 + 59291 25030 39609 40498 69055 69055 -0.008839414508543086 SLNNLHFG 8 Unmodified _SLNNLHFG_ 0 0 0 REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.23046875 2 451.229959 900.445365 0.80009 0.00036102 1.3275 0.00059903 2.1276 0.00096005 451.23049326182274 59.149 0.28475 59.088 58.901 59.186 -0.060719 23 13 2 0 0 0 8.7369 1 32282 32282 6.3541 3.7766 1 8580200 + 59292 25030 39609 40498 69056 69056 -0.008839414508543086 SLNNLHFG 8 Unmodified _SLNNLHFG_ 0 0 0 REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF REV__ENST00000262741.9_2_1:46508751-46508952:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.229959 900.445365 0.21224 9.5771E-05 1.7656 0.00079669 1.9778 0.00089246 451.2306989890824 59.724 0.2622 59.233 59.11 59.372 -0.49079 -0.046035 0.00064824 NaN 6.3541 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2032800 + 59293 25030 39609 40498 -0.008839414508543086 SLNNLIYV 8 Unmodified _SLNNLIYV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.3760375976562 1 935.519659 934.512382 1.3238 0.0012384 0.0017335 1.6217E-06 1.3255 0.00124 935.5186613202616 63.96 0.26539 57.785 57.634 57.899 -6.1757 21 14 2 0 0 0 0.63229 1 41394 41394 23.148 2.6948 1 8392800 59294 3064 39610 40499 69057 69057 0.04250669040231969 SLNPATTP 8 Unmodified _SLNPATTP_ 0 0 0 REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4519653320312 1 800.414859 799.407583 0.052168 4.1756E-05 -4.0788 -0.0032647 -4.0266 -0.003223 800.4121045847169 52.695 0.29745 52.25 52.109 52.407 -0.4444 17 14 2 0 0 0 8.7369 1 28530 28530 23.148 0 1 1180500 + 59295 29132 39611 40500 69058 69058 -0.00014452436334977392 SLNPATTP 8 Unmodified _SLNPATTP_ 0 0 0 REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF REV__ENST00000589022.1_1_19:11464267-11465550:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 800.414859 799.407583 -0.27264 -0.00021822 -2.0892 -0.0016722 -2.3618 -0.0018904 800.4135844827584 52.232 0.3159 52.232 52.06 52.376 0 -0.0089565 0.00016393 NaN 23.148 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2140400 + 59296 29132 39611 40500 -0.00014452436334977392 SLNPDGFP 8 Unmodified _SLNPDGFP_ 0 0 0 REV__ENSG00000124486|ENST00000378308|USP9X REV__ENSG00000124486|ENST00000378308|USP9X MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.4004516601562 1 846.399209 845.391933 0.78829 0.00066721 0.15434 0.00013063 0.94263 0.00079784 846.3991490674932 83.096 0.40149 76.92 76.768 77.17 -6.1757 35 21 2 0 0 0 0.42423 1 54714 54714 42.095 2.1372 1 11230000 + 59297 19449 39612 40501 69059 69059 -0.0369473895336796 SLNVRRALE 9 Unmodified _SLNVRRALE_ 0 0 0 REV__ENSG00000167157|ENST00000372469|PRRX2 REV__ENSG00000167157|ENST00000372469|PRRX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.76123046875 2 529.309272 1056.60399 0.26441 0.00013996 -0.81514 -0.00043146 -0.55073 -0.00029151 529.3087018744186 24.308 0.36905 21.481 21.284 21.653 -2.8273 41 20 3 0 0 0 0.209 1 13134 13134 7.2892 1.5288 1 14160000 + 59298 22186 39613 40502 69060 69060 0.07795352457424087 SLNYGQFEL 9 Unmodified _SLNYGQFEL_ 0 0 0 REV__nc|ENSG00000074410|O43570-2|CA12 REV__nc|ENSG00000074410|O43570-2|CA12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.340576171875 2 535.761289 1069.50803 0.14407 7.7188E-05 -0.095405 -5.1114E-05 0.048667 2.6074E-05 535.7601186484192 23.949 0.21172 21.122 21.073 21.284 -2.8273 16 11 2 0 0 0 0.20358 1 13011 13011 10.074 1.4806 1 1820800 + 59299 17552 39614 40503 69061 69061 -0.023948401733150604 SLPAFGPD 8 Unmodified _SLPAFGPD_ 0 0 0 ENSG00000112706|ENST00000369950|IMPG1 ENSG00000112706|ENST00000369950|IMPG1 ENSG00000112706|ENST00000369950|IMPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.3932495117188 1 803.393396 802.386119 0.31978 0.00025691 0.30363 0.00024393 0.62341 0.00050084 803.3935763203539 73.885 0.34067 73.409 73.252 73.593 -0.47588 39 16 3 0 0 0 0.3408 1 40500 40500 50.855 3.9342 1 5353400 59300 2913 39615 40504 69062 69062 -0.022978374650392652 SLPAGDALYL 10 Unmodified _SLPAGDALYL_ 0 0 0 nc|ENSG00000116584|Q92974-3|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;ENSG00000116584|ENST00000361247|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 nc|ENSG00000116584|Q92974-3|ARHGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2735595703125 2 510.274032 1018.53351 0.29933 0.00015274 -0.091046 -4.6459E-05 0.20828 0.00010628 510.27419572487065 64.14 0.4992 64.14 63.974 64.473 0 30 21 2 0 0 0 0.50944 1 35731 35731 15.847 0 1 1106800 59301 3230 39616 40505 69063 69063 0.02498634349092299 SLPAKLPGLRC 11 Unmodified _SLPAKLPGLRC_ 0 0 0 ENST00000578846.5_1_17:80019305-80021015:-|nuORF ENST00000578846.5_1_17:80019305-80021015:-|nuORF ENST00000578846.5_1_17:80019305-80021015:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.42529296875 2 577.839351 1153.66415 NaN NaN NaN NaN NaN NaN NaN 14.452 1 14.46 13.96 14.96 0.0073986 0 0 0 0.94337 1 7165 7165 0 0 1 59302 15545 39617 40506 69064 69064 0.09346326796276117 SLPALPLG 8 Unmodified _SLPALPLG_ 0 0 0 ENST00000303329.8_1_15:80888135-80888297:+|nuORF ENST00000303329.8_1_15:80888135-80888297:+|nuORF ENST00000303329.8_1_15:80888135-80888297:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2376098632812 2 384.236722 766.45889 NaN NaN NaN NaN NaN NaN NaN 35.779 1 35.804 35.304 36.304 0.024967 0 0 0 0.97444 1 18930 18930 0.79363 0 1 59303 11592 39618 40507 69065 69065 0.06631916328387888 SLPALTGGYSW 11 Unmodified _SLPALTGGYSW_ 0 0 0 REV__ENST00000529203.1_1_11:67269454-67270084:-|nuORF REV__ENST00000529203.1_1_11:67269454-67270084:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7611694335938 2 576.290214 1150.56587 0.39625 0.00022835 -1.1354 -0.00065433 -0.73917 -0.00042598 576.2893687209898 76.726 0.4031 70.55 70.316 70.719 -6.1757 43 20 3 0 0 0 0.58219 1 50146 50146 12.241 1.1262 1 22589000 + 59304 28418 39619 40508 69066 69066 -0.0033857824789720325 SLPCGHLF 8 Unmodified _SLPCGHLF_ 0 0 0 ENST00000507522.1_1_5:251472-253152:+|nuORF ENST00000507522.1_1_5:251472-253152:+|nuORF ENST00000507522.1_1_5:251472-253152:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 437.2171020507812 2 437.218006 872.421459 NaN NaN NaN NaN NaN NaN NaN 94.276 1 88.1 87.6 88.6 -6.1757 0 0 0 0.97444 1 62442 62442 5.2307 2.3415 1 59305 14541 39620 40509 69067 69067 -0.01985498208887293 SLPDFCHKF 9 Carbamidomethyl (C) _SLPDFC(Carbamidomethyl (C))HKF_ SLPDFC(1)HKF SLPDFC(46)HKF 0 1 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1835327148438 3 384.183181 1149.52771 0.97319 0.00037388 -0.049913 -1.9176E-05 0.92328 0.00035471 384.51743982746615 52.127 0.41799 46.393 46.234 46.652 -5.7345 57 26 3 0 0 0 0.047714 1 32850 32850 45.74 36.496 1 104710000 59306 8266 39621 40510 69068 69068 793 -0.04106787434238868 SLPDHLPSV 9 Unmodified _SLPDHLPSV_ 0 0 0 ENSG00000100288|ENST00000406938|CHKB;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENST00000465842.1_1_22:51020081-51020803:-|nuORF;ENST00000492556.5_1_22:51020665-51020803:-|nuORF;ENST00000484266.5_1_22:51019047-51020803:-|nuORF;ENST00000481673.5_1_22:51020665-51021234:-|nuORF ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7577209472656 2 482.758549 963.502546 NaN NaN NaN NaN NaN NaN NaN 51.868 1 51.868 51.368 52.368 0 0 0 0 0.18753 1 28675 28675 32.305 5.4218 1 59307 1784 39622 40511 69069 69069 0.019334810348595965 SLPDHLPSV 9 Unmodified _SLPDHLPSV_ 0 0 0 ENSG00000100288|ENST00000406938|CHKB;ENST00000468532.5_1_22:51018168-51020803:-|nuORF;ENST00000465842.1_1_22:51020081-51020803:-|nuORF;ENST00000492556.5_1_22:51020665-51020803:-|nuORF;ENST00000484266.5_1_22:51019047-51020803:-|nuORF;ENST00000481673.5_1_22:51020665-51021234:-|nuORF ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7585754394531 2 482.758549 963.502546 1.4878 0.00071826 -0.22296 -0.00010764 1.2649 0.00061063 482.7585011929925 58.586 0.49761 52.512 52.259 52.756 -6.0745 46 27 2 0 0 0 0.039985 2 37473 37473;37601 49.933 15.831 1 14188000 59308 1784 39622 40511 69070;69071 69070 0.019334810348595965 SLPDLTPTF 9 Unmodified _SLPDLTPTF_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7607727050781 2 495.760758 989.506963 -0.72828 -0.00036105 -0.23341 -0.00011572 -0.96169 -0.00047677 495.7605396660058 77.981 0.38162 77.498 77.353 77.735 -0.4826 53 30 2 0 0 0 0.14602 2 42650 42650;42758 28.487 5.3384 1 7004400 59309 9879 39623 40512 69072;69073 69072 0.011789454577524339 SLPDLTPTF 9 Unmodified _SLPDLTPTF_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 990.5161743164062 1 990.514239 989.506963 -0.93299 -0.00092414 0.40633 0.00040248 -0.52666 -0.00052166 990.514223540958 77.963 0.25772 77.48 77.353 77.611 -0.4826 34 25 2 0 0 0 0.0067112 1 42665 42665 112.59 55.122 1 5258100 59310 9879 39623 40512 69074 69074 0.011789454577524339 SLPDLTPTF 9 Unmodified _SLPDLTPTF_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7610473632812 2 495.760758 989.506963 0.52078 0.00025818 0.73032 0.00036206 1.2511 0.00062025 495.7610641156892 85.671 0.32745 79.496 79.308 79.635 -6.1757 31 18 2 0 0 0 0.031062 2 56345 56345;56477 54.774 20.671 1 19039000 59311 9879 39623 40512 69075;69076 69075 0.011789454577524339 SLPDSPLRF 9 Unmodified _SLPDSPLRF_ 0 0 0 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 ENSG00000204610|ENST00000376694|TRIM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.279296875 2 516.279649 1030.54475 0.15369 7.9348E-05 -0.23641 -0.00012205 -0.082714 -4.2704E-05 516.2794628823658 61.738 0.43559 61.25 61.074 61.51 -0.48764 40 20 3 0 0 0 0.05447 2 33676 33581;33676 43.858 19.838 1 7690200 59312 10308 39624 40513 69077;69078 69078 0.030694564432451443 SLPDVPADL 9 Unmodified _SLPDVPADL_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7452697753906 2 463.745108 925.475663 0.76499 0.00035476 -0.18894 -8.7622E-05 0.57605 0.00026714 463.7450139080632 66.401 0.29561 66.401 66.216 66.512 0 18 12 2 0 0 0 0.2143 1 37010 37010 21.747 4.8044 1 629720 59313 10082 39625 40514 69079 69079 0.009943724236563867 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7620849609375 2 577.761289 1153.50803 0.44797 0.00025882 1.1928 0.00068914 1.6407 0.00094796 577.7619154623284 68.361 0.74243 68.361 68.043 68.786 0 76 34 3 0 0 0 0.052168 3 38024 38024;38121;38227 44.407 34.256 1 2346800 59314 782 39626 40515 69080;69081;69082 69080 -0.06258840173336466 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.761962890625 2 577.761289 1153.50803 0.31837 0.00018394 -0.024755 -1.4303E-05 0.29362 0.00016964 577.7613853231917 68.882 0.68681 68.401 68.076 68.763 -0.48071 79 30 3 0 0 0 0.03327 2 37609 37609;37709 53.576 41.935 1 4794900 59315 782 39626 40515 69083;69084 69083 -0.06258840173336466 SLPEDFYHF 9 Unmodified _SLPEDFYHF_ 0 0 0 ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1 ENST00000506125.1_1_4:170671685-170679028:-|nuORF ENST00000506125.1_1_4:170671685-170679028:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7626342773438 2 577.761289 1153.50803 0.68912 0.00039815 -0.062151 -3.5908E-05 0.62697 0.00036224 578.2628341918615 76.395 0.87118 70.219 69.617 70.489 -6.1757 82 47 2 0 0 0 0.019979 3 49631 49631;49900;50023 63.563 45.416 1 18615000 59316 782 39626 40515 69085;69086;69087 69085 -0.06258840173336466 SLPEDIPVF 9 Unmodified _SLPEDIPVF_ 0 0 0 ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2;ENST00000549610.5_1_12:53895138-53897614:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7687683105469 2 508.768583 1015.52261 0.36241 0.00018438 0.23152 0.00011779 0.59393 0.00030218 508.7686285371835 84.236 0.44411 84.236 84.021 84.465 0 54 22 3 0 0 0 0.052168 2 46744 46641;46744 44.407 8.3628 1 1530200 59317 5165 39627 40516 69088;69089 69089 0.015472319748255359 SLPEDIPVF 9 Unmodified _SLPEDIPVF_ 0 0 0 ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2;ENST00000549610.5_1_12:53895138-53897614:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7685546875 2 508.768583 1015.52261 NaN NaN NaN NaN NaN NaN NaN 84.703 1 84.203 83.703 84.703 -0.49961 0 0 0 0.43505 1 46350 46350 18.135 5.6034 1 59318 5165 39627 40516 69090 69090 0.015472319748255359 SLPEGLPAPL 10 Unmodified _SLPEGLPAPL_ 0 0 0 nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1;ENST00000585857.1_1_16:4910827-4920335:+|nuORF nc|ENSG00000118900|Q9NPG3-2|UBN1 nc|ENSG00000118900|Q9NPG3-2|UBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2853393554688 2 497.2844 992.554247 NaN NaN NaN NaN NaN NaN NaN 75.098 1 75.098 74.598 75.598 0 0 0 0 0.91523 1 41781 41781 7.2892 0 1 59319 3400 39628 40517 69091 69091 0.05767224728754172 SLPEHVPM 8 Unmodified _SLPEHVPM_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 909.1362915039062 1 909.449865 908.442588 1.5628 0.0014213 -0.14673 -0.00013344 1.4161 0.0012878 909.4526207232578 81.281 0.66888 81.341 80.941 81.61 0.059929 30 25 2 0 0 0 0.80143 1 44730 44730 5.7604 0 1 3139600 + 59320 19740 39629 40518 69092 69092 -0.015295329000196034 SLPEKETRWSY 11 Unmodified _SLPEKETRWSY_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 698.850341796875 2 698.348791 1394.68303 -0.34002 -0.00023745 0.034111 2.3821E-05 -0.30591 -0.00021363 698.3489478629425 40.552 0.24316 40.552 40.432 40.675 0 35 12 4 0 0 0 0.42108 1 21775 21775 20.415 11.669 1 12676000 + 59321 21600 39630 40519 69093 69093 0.0014753490104340017 SLPEKETRWSY 11 Unmodified _SLPEKETRWSY_ 0 0 0 REV__ENSG00000161638|ENST00000293379|ITGA5 REV__ENSG00000161638|ENST00000293379|ITGA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 698.348791 1394.68303 -0.34002 -0.00023745 0.034111 2.3821E-05 -0.30591 -0.00021363 698.3489478629425 40.552 0.24316 40.552 40.432 40.675 0 -0.092677 0.00037914 NaN 20.415 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 12676000 + 59322 21600 39630 40519 0.0014753490104340017 SLPEQRVTI 9 Unmodified _SLPEQRVTI_ 0 0 0 nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1;ENST00000369936.2_1_1:109730792-109745631:+|nuORF;ENST00000369938.5_1_1:109730226-109745631:+|nuORF;ENST00000527996.5_1_1:109656894-109745573:+|nuORF nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 nc|ENSG00000116299|Q6UXG2-3|ELAPOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.297119140625 2 521.798206 1041.58186 -0.12383 -6.4613E-05 -2.7735 -0.0014472 -2.8974 -0.0015118 522.2978800024266 39.372 0.23369 39.085 39.02 39.254 -0.28687 11 10 2 0 0 0 0.46501 1 20777 20777 9.3831 0.78985 1 3322200 59323 3213 39631 40520 69094 69094 0.06273127989015848 SLPESVPLF 9 Unmodified _SLPESVPLF_ 0 0 0 nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A;ENST00000568515.1_1_15:66007788-66048788:-|nuORF nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000174485|Q7Z401|DENND4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2748413085938 2 494.771126 987.527698 1.1725 0.00058012 0.18689 9.247E-05 1.3594 0.00067259 494.77107238958814 91.967 0.66771 85.791 85.416 86.083 -6.1757 63 38 2 0 0 0 0.019303 1 60701 60701 64.236 3.8468 1 17149000 59324 8426 39632 40521 69095 69095 0.0334353583742768 SLPETLEKTF 10 Unmodified _SLPETLEKTF_ 0 0 0 nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9;ENST00000545556.6_1_12:123687751-123702981:-|nuORF nc|ENSG00000051825|Q99550-2|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8116455078125 2 582.810979 1163.6074 0.79336 0.00046238 0.67709 0.00039461 1.4704 0.00085699 582.8112997243516 18.809 0.25051 16.188 16.069 16.32 -2.6215 24 17 2 0 0 0 0.70895 1 9888 9888 1.6526 0 1 3386800 59325 736 39633 40522 69096 69096 0.03214557720752964 SLPFANKHL 9 Unmodified _SLPFANKHL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7905883789062 2 513.790184 1025.56581 0.60429 0.00031048 0.71525 0.00036749 1.3195 0.00067796 513.790508705005 40.112 0.20782 40.117 40.004 40.212 0.0050545 16 9 2 0 0 0 0.55775 1 21355 21355 3.9444 0 1 8566200 59326 9690 39634 40523 69097 69097 0.05405466542742943 SLPFDYDYY 9 Unmodified _SLPFDYDYY_ 0 0 0 REV__ENSG00000139329|ENST00000266718|LUM REV__ENSG00000139329|ENST00000266718|LUM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2813110351562 2 591.75313 1181.49171 0.074406 4.403E-05 1.9001 0.0011244 1.9745 0.0011684 591.7543252021803 58.807 0.27173 58.807 58.63 58.902 0 27 11 3 0 0 0 0.20727 1 32677 32677 7.9102 3.1541 1 3960400 + 59327 20403 39635 40524 69098 69098 -0.09177966130118875 SLPFLIHY 8 Unmodified _SLPFLIHY_ 0 0 0 ENSG00000165621|ENST00000541038|OXGR1 ENSG00000165621|ENST00000541038|OXGR1 ENSG00000165621|ENST00000541038|OXGR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7549743652344 2 495.276378 988.538203 0.54441 0.00026963 -0.95624 -0.0004736 -0.41183 -0.00020397 495.275396154446 38.664 0.23274 38.664 38.515 38.747 0 23 10 3 0 0 0 8.7369 1 20689 20689 19.439 0 1 2328400 59328 7363 39636 40525 69099 69099 0.043475632825106914 SLPFNEIDDYR 11 Unmodified _SLPFNEIDDYR_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 684.827880859375 2 684.825149 1367.63574 0.077325 5.2954E-05 0.25615 0.00017542 0.33347 0.00022837 684.8256530678916 41.212 0.28967 40.908 40.738 41.028 -0.30304 33 13 4 0 0 0 0.65846 1 21793 21793 8.1555 2.4237 1 5244200 + 59329 22486 39637 40526 69100 69100 -0.033367443699717114 SLPFVQGLQSP 11 Unmodified _SLPFVQGLQSP_ 0 0 0 REV__ENSG00000138593|ENST00000559471|SECISBP2L REV__ENSG00000138593|ENST00000559471|SECISBP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5498352050781 3 391.548518 1171.62372 0.99098 0.00038802 1.1441 0.00044796 2.1351 0.00083598 391.548978467122 46.481 0.63417 46.448 46.139 46.774 -0.033417 68 30 3 0 0 0 0.73349 1 24978 24978 1.1098 1.1098 1 2248600 + 59330 20338 39638 40527 69101 69101 0.04477683677509958 SLPFVQGLQSP 11 Unmodified _SLPFVQGLQSP_ 0 0 0 REV__ENSG00000138593|ENST00000559471|SECISBP2L REV__ENSG00000138593|ENST00000559471|SECISBP2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.548518 1171.62372 0.26148 0.00010238 1.7336 0.00067879 1.9951 0.00078117 391.8837563537795 46.618 0.070648 46.618 46.585 46.656 0 0.085466 0.00056417 NaN 1.1098 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 384820 + 59331 20338 39638 40527 0.04477683677509958 SLPFVQGLQSP 11 Unmodified _SLPFVQGLQSP_ 0 0 0 REV__ENSG00000138593|ENST00000559471|SECISBP2L REV__ENSG00000138593|ENST00000559471|SECISBP2L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 391.548518 1171.62372 0.99098 0.00038802 1.1441 0.00044796 2.1351 0.00083598 391.548978467122 46.481 0.63417 46.448 46.139 46.774 -0.033417 -0.085466 -0.00012832 NaN 1.1098 68 30 3 NaN NaN NaN NaN 0 NaN NaN 0 2248600 + 59332 20338 39638 40527 0.04477683677509958 SLPGARPLCL 10 Unmodified _SLPGARPLCL_ 0 0 0 ENST00000563829.5_1_15:75137426-75144629:-|nuORF ENST00000563829.5_1_15:75137426-75144629:-|nuORF ENST00000563829.5_1_15:75137426-75144629:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7908935546875 2 513.791869 1025.56919 0.50103 0.00025742 -1.09 -0.00056003 -0.58896 -0.0003026 513.7911763891506 69.94 0.64353 69.971 69.664 70.307 0.030914 47 32 2 0 0 0 0.62068 1 38493 38493 10.074 2.1638 1 4681600 59333 15369 39639 40528 69102 69102 0.05742393325090234 SLPGVPYP 8 Unmodified _SLPGVPYP_ 0 0 0 ENST00000374675.7_1_6:33171853-33172033:+|nuORF ENST00000374675.7_1_6:33171853-33172033:+|nuORF ENST00000374675.7_1_6:33171853-33172033:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4519653320312 1 829.445431 828.438155 -0.068299 -5.665E-05 -0.29751 -0.00024677 -0.36581 -0.00030342 829.4451539090117 64.752 0.78387 64.752 64.386 65.169 0 64 37 2 0 0 0 0.78849 1 35966 35966 9.3474 0 1 1969800 59334 12452 39640 40529 69103 69103 0.017073259487119685 SLPHAAKNHF 10 Unmodified _SLPHAAKNHF_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031900 REV__CON__ENSEMBL:ENSBTAP00000031900 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2672729492188 2 561.296165 1120.57778 NaN NaN NaN NaN NaN NaN NaN 89.774 1 89.774 89.274 90.274 0 0 0 0 0.99091 1 49670 49670 1.6526 0.85899 1 + + 59335 16830 39641 40530 69104 69104 0.022310832859375296 SLPHALPA 8 Unmodified _SLPHALPA_ 0 0 0 REV__ENST00000394900.7_2_11:61114020-61114101:+|nuORF REV__ENST00000394900.7_2_11:61114020-61114101:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.45703125 1 805.456665 804.449388 0.44356 0.00035727 0.52795 0.00042524 0.97151 0.00078251 805.4572472784023 42.478 0.26609 42.478 42.339 42.605 0 22 12 2 0 0 0 0.2655 2 22950 22950;23060 59.795 3.2539 1 4683400 + 59336 26460 39642 40531 69105;69106 69105 0.039341480428561226 SLPHALPA 8 Unmodified _SLPHALPA_ 0 0 0 REV__ENST00000394900.7_2_11:61114020-61114101:+|nuORF REV__ENST00000394900.7_2_11:61114020-61114101:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2328186035156 2 403.231971 804.449388 1.6164 0.00065177 -0.016438 -6.6282E-06 1.5999 0.00064514 403.2320356886403 47.543 0.3735 42.309 42.123 42.496 -5.2339 27 21 2 0 0 0 0.44122 1 29512 29512 40.449 2.2974 1 7139300 + 59337 26460 39642 40531 69107 69107 0.039341480428561226 SLPHPAGWQYF 11 Unmodified _SLPHPAGWQYF_ 0 0 0 ENST00000431611.5_2_22:38689311-38696738:-|nuORF;ENST00000359867.7_2_22:38689311-38694809:-|nuORF ENST00000431611.5_2_22:38689311-38696738:-|nuORF ENST00000431611.5_2_22:38689311-38696738:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8820495605469 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 17.438 1 17.443 16.943 17.943 0.0050564 0 0 0 0.94165 1 8795 8795 0.45452 0.1855 1 59338 13263 39643 40532 69108 69108 -0.019437807453869027 SLPHQSKVQF 10 Unmodified _SLPHQSKVQF_ 0 0 0 REV__ENST00000395383.5_1_8:133790074-133836319:+|nuORF REV__ENST00000395383.5_1_8:133790074-133836319:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8821105957031 3 390.880379 1169.61931 1.1651 0.00045543 0.71591 0.00027984 1.8811 0.00073527 390.881939931427 93.717 0.88503 87.542 87.233 88.118 -6.1757 70 52 2 0 0 0 0.56348 1 61998 61998 7.9454 0 1 20227000 + 59339 26477 39644 40533 69109 69109 0.04128219254607757 SLPHRRPHF 9 Unmodified _SLPHRRPHF_ 0 0 0 nc|ENSG00000120885|P10909-4|CLU;ENST00000522299.5_1_8:27457218-27472184:-|nuORF;nc|ENSG00000120885|P10909-6|CLU;ENSG00000120885|ENST00000316403|CLU;nc|ENSG00000120885|P10909-5|CLU;nc|ENSG00000120885|P10909-2|CLU;nc|ENSG00000120885|P10909-3|CLU nc|ENSG00000120885|P10909-4|CLU nc|ENSG00000120885|P10909-4|CLU MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8814086914062 3 382.880825 1145.62064 1.0703 0.0004098 0.44786 0.00017148 1.5182 0.00058127 382.88102103617905 18.183 0.38327 15.562 15.372 15.755 -2.6215 91 28 4 0 0 0 0.06187 2 9502 9502;9604 38.176 38.176 1 55805000 59340 3549 39645 40534 69110;69111 69110 0.05365898134027702 SLPIAGSVGM 10 Unmodified _SLPIAGSVGM_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B;ENST00000595476.1_1_19:39869154-39871842:+|nuORF ENSG00000179134|ENST00000610417|SAMD4B;ENST00000595476.1_1_19:39869154-39871842:+|nuORF ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2523803710938 2 466.249503 930.484453 0.91692 0.00042751 -0.15297 -7.1324E-05 0.76395 0.00035619 466.2494657373186 34.303 0.44613 30.317 30.065 30.511 -3.9853 61 25 3 0 0 0 0.1028 1 19626 19626 46.021 2.1627 1 46943000 59341 8814;15757 39646 40535 69112 69112 0.016430227885052773 SLPKFYLLF 9 Unmodified _SLPKFYLLF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3292236328125 2 564.328611 1126.64267 3.6236 0.0020449 0.42633 0.00024059 4.0499 0.0022855 564.3286751066582 97.773 0.34998 97.754 97.577 97.927 -0.018188 37 12 4 0 0 0 0.098164 1 54304 54304 36.127 9.2434 1 11352000 59342 16480 39647 40536 69113 69113 0.08441265039209611 SLPKFYLLF 9 Unmodified _SLPKFYLLF_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3287353515625 2 564.328611 1126.64267 0.70962 0.00040046 -1.8215 -0.0010279 -1.1119 -0.00062749 564.3272812053324 100.61 0.24442 94.439 94.27 94.515 -6.1757 33 15 3 0 0 0 0.067618 1 67318 67318 51.63 15.503 1 140960000 59343 16480 39647 40536 69114 69114 0.08441265039209611 SLPKKLALL 9 Unmodified _SLPKKLALL_ 0 0 0 ENST00000588858.5_1_19:13886394-13889009:+|nuORF;ENSG00000104979|ENST00000588234|C19orf53 ENST00000588858.5_1_19:13886394-13889009:+|nuORF ENST00000588858.5_1_19:13886394-13889009:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8372497558594 2 491.836603 981.658653 1.0486 0.00051572 0.11804 5.8055E-05 1.1666 0.00057378 491.8363089012344 50.685 0.21813 50.631 50.51 50.728 -0.053871 22 10 3 0 0 0 0.2143 1 27403 27403 21.747 9.2151 1 1900200 59344 2267 39648 40537 69115 69115 0.1670897127612534 SLPLIGFE 8 Unmodified _SLPLIGFE_ 0 0 0 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 ENSG00000102302|ENST00000375135|FGD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.9173583984375 1 875.487296 874.48002 -0.11183 -9.7904E-05 1.328 0.0011626 1.2162 0.0010647 875.4906467118635 27.478 0.21034 27.432 27.284 27.495 -0.046408 10 9 2 0 0 0 8.7369 1 14136 14136 5.2307 0 1 2892900 59345 2033 39649 40538 69116 69116 0.037758816372502224 SLPLRPRPCAR 11 Unmodified _SLPLRPRPCAR_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5802612304688 3 422.580158 1264.71864 0.9242 0.00039055 0.39271 0.00016595 1.3169 0.0005565 422.5802680993223 66.048 0.41506 66.058 65.768 66.183 0.0095596 40 20 3 0 0 0 0.70147 1 36188 36188 4.1166 2.787 1 10042000 + 59346 26289 39650 40539 69117 69117 0.09687338667731638 SLPLRPRPCAR 11 Unmodified _SLPLRPRPCAR_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 422.580158 1264.71864 0.20848 8.81E-05 0.48516 0.00020502 0.69364 0.00029312 422.5803614974633 66.629 0.20948 66.146 65.984 66.194 -0.48323 0.043887 9.5766E-05 NaN 4.1166 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 547200 + 59347 26289 39650 40539 0.09687338667731638 SLPLRPRPCAR 11 Unmodified _SLPLRPRPCAR_ 0 0 0 REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 422.580158 1264.71864 0.9242 0.00039055 0.39271 0.00016595 1.3169 0.0005565 422.5802680993223 66.048 0.41506 66.058 65.768 66.183 0.0095596 -0.043887 -2.1433E-05 NaN 4.1166 40 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10042000 + 59348 26289 39650 40539 0.09687338667731638 SLPMARQA 8 Unmodified _SLPMARQA_ 0 0 0 ENST00000428849.6_1_6:33372953-33373169:+|nuORF ENST00000428849.6_1_6:33372953-33373169:+|nuORF ENST00000428849.6_1_6:33372953-33373169:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.23388671875 2 437.234187 872.453822 0.6433 0.00028127 -2.375 -0.0010384 -1.7317 -0.00075716 437.2333426124814 48.1 0.60414 48.061 47.64 48.244 -0.038643 70 29 4 0 0 0 0.80232 1 25967 25967 5.2307 0.47466 1 18307000 59349 13213 39651 40540 69118 69118 0.012492891941064954 SLPMLVRQL 9 Unmodified _SLPMLVRQL_ 0 0 0 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.5471496582031 3 352.879322 1055.61614 1.1345 0.00040034 2.3716 0.0008369 3.5061 0.0012372 352.8801942013235 41.232 0.27346 36.624 36.499 36.772 -4.6079 27 16 3 0 0 0 0.19111 1 24752 24752 11.495 6.9658 1 18262000 59350 10525 39652 40541 69119 69119 0.09055252876260056 SLPMVFVF 8 Unmodified _SLPMVFVF_ 0 0 0 REV__ENSG00000188582|ENST00000340634|PAQR9 REV__ENSG00000188582|ENST00000340634|PAQR9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2528991699219 2 470.254057 938.493561 NaN NaN NaN NaN NaN NaN NaN 73.355 1 72.879 72.379 73.379 -0.47588 0 0 0 0.97348 1 40143 40143 5.7604 2.8712 1 + 59351 23717 39653 40542 69120 69120 0.02185416144834562 SLPNICENDNL 11 Unmodified _SLPNICENDNL_ 0 0 0 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20;nc|ENSG00000137727|Q9P2F6-2|ARHGAP20;nc|ENSG00000137727|Q9P2F6-3|ARHGAP20;ENSG00000137727|ENST00000683387|ARHGAP20 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 nc|ENSG00000137727|Q9P2F6-4|ARHGAP20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1904296875 3 411.192294 1230.55505 0.30889 0.00012701 1.1879 0.00048847 1.4968 0.00061548 411.19258797812824 23.188 0.8246 20.409 19.857 20.681 -2.7784 213 65 6 0 0 0 0.65846 2 12441 12441;12549 6.6235 3.3038 1 131750000 59352 4962 39654 40543 69121;69122 69121 -0.05100348684504752 SLPNPPPT 8 Unmodified _SLPNPPPT_ 0 0 0 ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENSG00000077044|ENST00000264057|DGKD;ENST00000490764.5_1_2:234327938-234366271:+|nuORF ENST00000490764.5_1_2:234327938-234366271:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 822.4354248046875 1 822.435595 821.428318 0.50591 0.00041608 -0.36879 -0.0003033 0.13713 0.00011278 822.4353467209146 54.12 0.22879 54.12 53.968 54.197 0 14 10 2 0 0 0 0.31612 1 29986 29986 53.576 2.7205 1 1894200 59353 1202;14267 39655 40544 69123 69123 0.010461379433309048 SLPNRPPKQ 9 Unmodified _SLPNRPPKQ_ 0 0 0 REV__nc|ENSG00000076555|O00763-2|ACACB REV__nc|ENSG00000076555|O00763-2|ACACB MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7985229492188 2 518.79854 1035.58253 0.5082 0.00026365 -2.1461 -0.0011134 -1.6379 -0.00084972 518.7981828601496 27.43 0.27706 24.393 24.317 24.594 -3.0365 22 13 2 0 0 0 0.07916 1 15214 15214 37.974 3.5723 1 13922000 + 59354 17591 39656 40545 69124 69124 0.06615967428683689 SLPPLHCLPL 10 Unmodified _SLPPLHCLPL_ 0 0 0 ENST00000398988.7_2_17:25951918-25952683:+|nuORF ENST00000398988.7_2_17:25951918-25952683:+|nuORF ENST00000398988.7_2_17:25951918-25952683:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3120727539062 2 545.309895 1088.60524 NaN NaN NaN NaN NaN NaN NaN 84.114 1 84.178 83.678 84.678 0.063171 0 0 0 0.81521 1 46538 46538 11.64 0.81637 1 59355 12860 39657 40546 69125 69125 0.06447850501967878 SLPPVKRRRMN 11 Unmodified _SLPPVKRRRMN_ 0 0 0 nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;ENST00000494981.1_1_14:105935406-105936549:+|nuORF;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF nc|ENSG00000182979|Q13330-3|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.3981323242188 2 677.39843 1352.78231 NaN NaN NaN NaN NaN NaN NaN 100.95 1 100.91 100.41 101.41 -0.04216 0 0 0 0.93933 1 56078 56078 2.9952 0 1 59356 9106 39658 40547 69126 69126 0.1200269910480074 SLPRKGSL 8 Unmodified _SLPRKGSL_ 0 0 0 REV__ENST00000307741.10_1_19:2813382-2813568:+|nuORF REV__ENST00000307741.10_1_19:2813382-2813568:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2638549804688 2 429.263802 856.513051 0.48073 0.00020636 0.013716 5.8877E-06 0.49445 0.00021225 429.2637970790485 22.692 0.36719 19.913 19.722 20.089 -2.7784 47 26 2 0 0 0 0.60622 1 12294 12294 25.399 0 1 16091000 + 59357 25391 39659 40548 69127 69127 0.07905508479939272 SLPRSRWWI 9 Unmodified _SLPRSRWWI_ 0 0 0 ENST00000425394.6_1_12:56713258-56713451:-|nuORF ENST00000425394.6_1_12:56713258-56713451:-|nuORF ENST00000425394.6_1_12:56713258-56713451:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8927917480469 3 400.89273 1199.65636 NaN NaN NaN NaN NaN NaN NaN 17.589 1 17.594 17.094 18.094 0.0050564 0 0 0 0.84564 1 8879 8879 1.0715 0 1 59358 13163 39660 40549 69128 69128 0.06451935591030633 SLPSSWKEM 9 Oxidation (M) _SLPSSWKEM(Oxidation (M))_ SLPSSWKEM(1) SLPSSWKEM(64) 0 0 1 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7559814453125 2 540.755149 1079.49575 1.0871 0.00058784 -2.4389 -0.0013188 -1.3518 -0.000731 540.7547244434461 37.472 0.38114 33.189 32.974 33.355 -4.2835 59 22 5 0 0 0 0.01958 1 22023 22023 63.961 10.128 1 21444000 59359 706 39661 40550 69129 69129 111 -0.04082199908043549 SLPTGVLSF 9 Unmodified _SLPTGVLSF_ 0 0 0 REV__ENSG00000169896|ENST00000544665|ITGAM REV__ENSG00000169896|ENST00000544665|ITGAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7585144042969 2 460.758018 919.501483 NaN NaN NaN NaN NaN NaN NaN 70.427 1 70.427 69.927 70.927 0 0 0 0 0.82739 1 39241 39241 4.3292 0 1 + 59360 22434 39662 40551 69130 69130 0.03851266665958519 SLPTGYPVVF 10 Unmodified _SLPTGYPVVF_ 0 0 0 REV__ENSG00000114200|ENST00000264381|BCHE REV__ENSG00000114200|ENST00000264381|BCHE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.29248046875 2 540.292225 1078.5699 0.46521 0.00025135 -0.25897 -0.00013992 0.20624 0.00011143 540.2918765737853 53.028 0.17947 53.028 52.92 53.099 0 10 8 2 0 0 0 0.31022 1 29390 29390 26.884 5.137 1 1875600 + 59361 18906 39663 40552 69131 69131 0.03375511245803864 SLPTGYPVVF 10 Unmodified _SLPTGYPVVF_ 0 0 0 REV__ENSG00000114200|ENST00000264381|BCHE REV__ENSG00000114200|ENST00000264381|BCHE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.5283813476562 2 540.292225 1078.5699 0.46521 0.00025135 -0.25897 -0.00013992 0.20624 0.00011143 540.2918765737853 53.028 0.17947 53.028 52.92 53.099 0 10 8 2 0 0 0 0.17615 1 29377 29377 26.884 11.036 1 1875600 + 59362 18906 39663 40552 69132 69132 0.03375511245803864 SLPVFCQYM 9 Unmodified _SLPVFCQYM_ 0 0 0 REV__ENST00000025301.3_1_13:42874606-42874669:+|nuORF REV__ENST00000025301.3_1_13:42874606-42874669:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2761840820312 2 544.251188 1086.48782 -0.41431 -0.00022549 2.4843 0.0013521 2.07 0.0011266 544.7535119041817 48.532 0.10275 48.532 48.452 48.555 0 5 4 2 0 0 0 0.21052 1 26616 26616 6.7232 1.4925 1 794680 + 59363 24704 39664 40553 69133 69133 -0.05196050429162824 SLPVLPSSRSL 11 Unmodified _SLPVLPSSRSL_ 0 0 0 ENST00000395884.3_1_8:103665886-103666201:-|nuORF ENST00000395884.3_1_8:103665886-103666201:-|nuORF ENST00000395884.3_1_8:103665886-103666201:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8968505859375 3 385.895917 1154.66592 0.048277 1.863E-05 2.3494 0.00090661 2.3976 0.00092524 385.8968679550882 19.849 0.093426 19.857 19.822 19.915 0.0078506 7 4 2 0 0 0 0.73992 1 10126 10126 0.50596 0.23694 1 390250 59364 12780 39665 40554 69134 69134 0.09477659085882806 SLPVPSETR 9 Unmodified _SLPVPSETR_ 0 0 0 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 ENSG00000161682|ENST00000293443|FAM171A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.7302551269531 2 493.269281 984.52401 1.2797 0.00063123 -3.3526 -0.0016538 -2.0729 -0.0010225 493.26743004853057 100.19 0.27579 94.018 93.769 94.044 -6.1757 28 17 2 0 0 0 0.15672 1 66769 66769 14.838 5.4908 1 9915100 59365 6806 39666 40555 69135 69135 0.03112866063565889 SLPVPSLLG 9 Unmodified _SLPVPSLLG_ 0 0 0 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7694702148438 2 441.768386 881.522219 0.19634 8.6737E-05 0.22679 0.00010019 0.42313 0.00018693 441.7696715387417 66.747 0.26464 66.264 66.09 66.355 -0.48323 22 12 2 0 0 0 0.59218 1 36440 36440 1.8442 0 1 1554300 59366 5957 39667 40556 69136 69136 0.07671857045613706 SLPVPSLLG 9 Unmodified _SLPVPSLLG_ 0 0 0 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 441.768386 881.522219 0.42443 0.0001875 2.0255 0.0008948 2.4499 0.0010823 441.76965696624063 66.303 0.33706 66.303 66.175 66.512 0 0.034398 -0.00038452 NaN 1.8442 36 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2843400 59367 5957 39667 40556 0.07671857045613706 SLPVPSLLG 9 Unmodified _SLPVPSLLG_ 0 0 0 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 ENSG00000148704|ENST00000369206|VAX1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 441.768386 881.522219 1.3105 0.00057895 2.7135 0.0011987 4.024 0.0017777 441.7694831791691 66.229 0.40018 66.239 66.08 66.48 0.0095596 -0.029687 0.00022336 NaN 1.8442 37 19 2 NaN NaN NaN NaN 0 NaN NaN 0 16774000 59368 5957 39667 40556 0.07671857045613706 SLPVSVPVW 9 Unmodified _SLPVSVPVW_ 0 0 0 nc|ENSG00000204673|Q96B36-2|AKT1S1;ENSG00000204673|ENST00000344175|AKT1S1;nc|ENSG00000204673|Q96B36-3|AKT1S1 nc|ENSG00000204673|Q96B36-2|AKT1S1 nc|ENSG00000204673|Q96B36-2|AKT1S1 MSMS AL20221201_MKP_PDAC_01 4 492.2832336425781 2 492.28166 982.548768 NaN NaN NaN NaN NaN NaN NaN 98.715 1 92.54 92.04 93.04 -6.1757 0 0 0 0.15618 1 65522 65522 36.044 1.9418 1 59369 10316 39668 40557 69137 69137 0.05679545936948216 SLPVTHGYGT 10 Unmodified _SLPVTHGYGT_ 0 0 0 REV__ENSG00000135750|ENST00000366621|KCNK1 REV__ENSG00000135750|ENST00000366621|KCNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2608032226562 2 516.261456 1030.50836 -1.0128 -0.00052285 1.2273 0.00063362 0.21457 0.00011077 516.2617107107029 56.395 0.17361 55.909 55.767 55.941 -0.48554 20 8 3 0 0 0 0.52888 1 30572 30572 14.838 1.3304 1 5880000 + 59370 20096 39669 40558 69138 69138 -0.005674204534670935 SLPVVGHP 8 Unmodified _SLPVVGHP_ 0 0 0 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.4630126953125 1 805.456665 804.449388 1.8014 0.0014509 -0.25857 -0.00020827 1.5428 0.0012427 805.456348069601 47.469 0.50745 42.235 42.043 42.55 -5.2339 64 29 3 0 0 0 0.61462 1 29465 29465 24.674 5.2349 1 33301000 + 59371 19677 39670 40559 69139 69139 0.039341480428561226 SLPWVLELD 9 Unmodified _SLPWVLELD_ 0 0 0 REV__ENST00000558090.2_1_15:83515441-83515591:-|nuORF REV__ENST00000558090.2_1_15:83515441-83515591:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.8873596191406 3 357.862214 1070.56481 1.8899 0.00067631 1.6197 0.00057961 3.5095 0.0012559 357.8629620421962 21.532 0.30005 18.797 18.676 18.976 -2.7348 45 21 3 0 0 0 0.21052 1 11540 11540 4.1895 1.1172 1 3523000 + 59372 28797 39671 40560 69140 69140 0.03235207383158922 SLPYRLVF 8 Unmodified _SLPYRLVF_ 0 0 0 ENST00000481458.1_1_21:37771819-37785123:+|nuORF;ENSG00000159259|ENST00000314103|CHAF1B;ENST00000404930.1_1_6:106114762-106115164:+|nuORF ENST00000481458.1_1_21:37771819-37785123:+|nuORF ENST00000481458.1_1_21:37771819-37785123:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2665710449219 2 497.789653 993.564752 0.13482 6.7112E-05 0.18322 9.1204E-05 0.31804 0.00015832 497.78967981408306 68.998 0.36758 68.517 68.352 68.719 -0.48071 28 15 2 0 0 0 8.7369 1 37800 37800 5.7604 0 1 1575100 59373 6641 39672 40561 69141 69141 0.06771252173848552 SLQAEPHF 8 Unmodified _SLQAEPHF_ 0 0 0 ENST00000392028.8_2_19:40946903-40947056:-|nuORF ENST00000392028.8_2_19:40946903-40947056:-|nuORF ENST00000392028.8_2_19:40946903-40947056:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.448974609375 1 928.452308 927.445031 0.94044 0.00087315 -1.6468 -0.0015289 -0.70633 -0.00065579 928.4505734392671 59.752 0.74147 53.638 53.496 54.238 -6.1147 72 40 2 0 0 0 0.57045 1 38741 38741 28.487 3.813 1 51418000 59374 12661 39673 40562 69142 69142 -0.02159361170720331 SLQDDPKL 8 Unmodified _SLQDDPKL_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2410888671875 2 458.242732 914.470912 0.62788 0.00028772 -1.9708 -0.00090308 -1.3429 -0.00061536 458.2411322678932 45.519 0.36408 40.565 40.425 40.789 -4.9549 49 24 3 0 0 0 0.3408 1 27903 27903 50.855 4.8341 1 30336000 59375 9115 39674 40563 69143 69143 0.010254882808908405 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.291259765625 2 544.290745 1086.56694 -0.09406 -5.1196E-05 0.073143 3.9811E-05 -0.020917 -1.1385E-05 544.290875792005 44.405 0.24763 44.405 44.284 44.532 0 21 12 2 0 0 0 0.012668 1 24171 24171 72.968 23.414 1 23073000 59376 894 39675 40564 69144 69144 0.027116361209891693 SLQDEIQRV 9 Unmodified _SLQDEIQRV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.29248046875 2 544.290745 1086.56694 0.94796 0.00051597 0.44045 0.00023973 1.3884 0.0007557 544.2911343243317 50.747 0.3382 45.098 44.958 45.297 -5.649 44 20 3 0 0 0 0.010611 2 31841 31841;31967 78.728 30.979 1 42068000 59377 894 39675 40564 69145;69146 69145 0.027116361209891693 SLQEHCNNL 9 Unmodified _SLQEHCNNL_ 0 0 0 ENSG00000184661|ENST00000330560|CDCA2 ENSG00000184661|ENST00000330560|CDCA2 ENSG00000184661|ENST00000330560|CDCA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2022705078125 2 529.240198 1056.46584 0.18465 9.7722E-05 -2.1476 -0.0011366 -1.963 -0.0010389 529.2394835834666 56.407 0.38337 56.407 56.322 56.705 0 20 16 2 0 0 0 0.19613 1 31479 31479 12.532 1.7076 1 1303500 59378 9281 39676 40565 69147 69147 -0.060131388533591235 SLQEKLWAI 9 Unmodified _SLQEKLWAI_ 0 0 0 ENSG00000101417|ENST00000409299|PXMP4;ENST00000217398.3_1_20:32295514-32298573:-|nuORF ENSG00000101417|ENST00000409299|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3110961914062 2 544.310949 1086.60735 0.41355 0.0002251 0.5945 0.0003236 1.0081 0.0005487 544.3113266362287 67.918 0.36012 67.436 67.255 67.615 -0.48219 34 16 3 0 0 0 0.029718 1 37077 37077 55.503 21.101 1 3299500 59379 1963 39677 40566 69148 69148 0.06750602511419856 SLQEKLWAI 9 Unmodified _SLQEKLWAI_ 0 0 0 ENSG00000101417|ENST00000409299|PXMP4;ENST00000217398.3_1_20:32295514-32298573:-|nuORF ENSG00000101417|ENST00000409299|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3114013671875 2 544.310949 1086.60735 0.35755 0.00019462 0.34823 0.00018955 0.70579 0.00038417 544.3108247696431 67.399 0.23726 67.417 67.277 67.514 0.018036 20 11 2 0 0 0 0.013118 1 37008 37008 71.708 17.875 1 3574800 59380 1963 39677 40566 69149 69149 0.06750602511419856 SLQEKLWAI 9 Unmodified _SLQEKLWAI_ 0 0 0 ENSG00000101417|ENST00000409299|PXMP4;ENST00000217398.3_1_20:32295514-32298573:-|nuORF ENSG00000101417|ENST00000409299|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 MSMS AL20221201_MKP_PDAC_01 4 544.3102416992188 2 544.310949 1086.60735 NaN NaN NaN NaN NaN NaN NaN 82.599 1 76.423 75.923 76.923 -6.1757 0 0 0 0.083147 1 54267 54267 47.732 9.5564 1 59381 1963 39677 40566 69150 69150 0.06750602511419856 SLQEKLWAI 9 Unmodified _SLQEKLWAI_ 0 0 0 ENSG00000101417|ENST00000409299|PXMP4;ENST00000217398.3_1_20:32295514-32298573:-|nuORF ENSG00000101417|ENST00000409299|PXMP4 ENSG00000101417|ENST00000409299|PXMP4 MSMS AL20221201_MKP_PDAC_01 4 544.311767578125 2 544.310949 1086.60735 NaN NaN NaN NaN NaN NaN NaN 82.817 1 76.641 76.141 77.141 -6.1757 0 0 0 0.06887 1 54422 54422 51.415 18.63 1 59382 1963 39677 40566 69151 69151 0.06750602511419856 SLQETIQSL 9 Unmodified _SLQETIQSL_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.8070068359375 2 509.774396 1017.53424 0.8481 0.00043234 0.49525 0.00025246 1.3433 0.0006848 509.7746624060384 68.972 0.43974 62.797 62.556 62.995 -6.1757 35 23 2 0 0 0 0.10271 1 44966 44966 39.95 10.109 1 17407000 59383 3468 39678 40567 69152 69152 0.026174289981554466 SLQGWVRAL 9 Unmodified _SLQGWVRAL_ 0 0 0 ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2943725585938 2 515.295633 1028.57671 0.2965 0.00015278 -1.1142 -0.00057414 -0.8177 -0.00042136 515.2952278374945 97.329 0.16689 97.087 96.979 97.146 -0.24277 12 7 2 0 0 0 0.48152 1 53143 53143 8.5933 0 1 684530 59384 13853 39679 40568 69153 69153 0.06356868917009706 SLQGWVRAL 9 Unmodified _SLQGWVRAL_ 0 0 0 ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF ENST00000470411.2_1_16:625978-626500:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.295633 1028.57671 0.25232 0.00013002 -1.5095 -0.00077786 -1.2572 -0.00064784 515.2949941622388 96.932 0.16878 96.932 96.826 96.995 0 -0.07715 -0.00020153 NaN 8.5933 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 310300 59385 13853 39679 40568 0.06356868917009706 SLQHPPVAEE 10 Unmodified _SLQHPPVAEE_ 0 0 0 REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF REV__ENST00000552941.5_3_14:65528035-65528353:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7799682617188 2 553.77747 1105.54039 NaN NaN NaN NaN NaN NaN NaN 69.273 1 68.792 68.292 69.292 -0.48071 0 0 0 0.89532 1 37869 37869 8.1555 0.24537 1 + 59386 28732 39680 40569 69154 69154 -0.008160527703466869 SLQITCTI 8 Carbamidomethyl (C) _SLQITC(Carbamidomethyl (C))TI_ SLQITC(1)TI SLQITC(57)TI 0 1 0 ENST00000417716.1_1_1:197191903-197192119:+|nuORF ENST00000417716.1_1_1:197191903-197192119:+|nuORF ENST00000417716.1_1_1:197191903-197192119:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.246826171875 2 468.24696 934.479368 0.65654 0.00030742 -0.53117 -0.00024872 0.12537 5.8704E-05 468.2466626114286 28.592 0.32201 25.444 25.212 25.534 -3.1482 29 16 2 0 0 0 0.28079 1 15981 15981 57.471 9.1255 1 7324900 59387 13058 39681 40570 69155 69155 981 0.009507189258897597 SLQKKLQHV 9 Unmodified _SLQKKLQHV_ 0 0 0 ENSG00000136682|ENST00000259199|ZNG1B;ENSG00000172785|ENST00000356521|ZNG1A;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;ENSG00000215126|ENST00000377391|ZNG1F;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000147996|ENST00000382405|ZNG1E;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;ENST00000382436.3_9:42674366-42714533:+|nuORF;ENST00000456188.5_1_2:114214762-114253317:+|nuORF;chr9:65715164-65720041|55|16.82|0.25|6.1|+|1|None,ZNG1E|1;ENST00000479583.5_1_2:114228547-114253317:+|nuORF;chr9:65301476-65306449|46|11.09|0.15|6.18|-|1|ZNG1DP,None|1;ENST00000468061.1_9:69204965-69229730:-|nuORF;ENST00000487575.6_1_9:121469-150531:-|nuORF;ENST00000468763.2_9:69204965-69234056:-|nuORF;ENST00000460896.1_9:42685444-42714533:+|nuORF;chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|102;chr9:65301476-65306364|53|14.47|0.18|6.37|-|1|ZNG1DP,None|1;ENST00000486387.2_9:42689759-42714533:+|nuORF ENSG00000136682|ENST00000259199|ZNG1B ENSG00000136682|ENST00000259199|ZNG1B MSMS AL20221201_MKP_PDAC_01 4 360.8592224121094 3 360.888986 1079.64513 NaN NaN NaN NaN NaN NaN NaN 17.703 1 15.117 14.617 15.617 -2.5866 0 0 0 0.82739 1 9281 9281 2.4985 0 1 59388 4842 39682 40571 69156 69156 0.10849113496897189 SLQKTYNIGFV 11 Unmodified _SLQKTYNIGFV_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3466796875 2 635.34552 1268.67649 0.17194 0.00010924 0.58691 0.00037289 0.75886 0.00048214 635.345864652213 75.895 0.22691 75.417 75.301 75.528 -0.47714 15 9 2 0 0 0 0.65108 1 41535 41535 8.7454 0 1 888420 + 59389 29516 39683 40572 69157 69157 0.052896417403189844 SLQKTYNIGFV 11 Unmodified _SLQKTYNIGFV_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 635.34552 1268.67649 0.17194 0.00010924 0.58691 0.00037289 0.75886 0.00048214 635.345864652213 75.895 0.22691 75.417 75.301 75.528 -0.47714 0.0099423 -0.0007355 NaN 8.7454 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 888420 + 59390 29516 39683 40572 0.052896417403189844 SLQKTYNIGFV 11 Unmodified _SLQKTYNIGFV_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 635.34552 1268.67649 0.18645 0.00011846 1.5921 0.0010115 1.7785 0.00113 635.346530580827 75.352 0.14233 75.398 75.288 75.431 0.045959 -0.0099423 0.00054172 NaN 8.7454 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1027400 + 59391 29516 39683 40572 0.052896417403189844 SLQLTGFQAY 10 Unmodified _SLQLTGFQAY_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11 ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2949829101562 2 564.290214 1126.56587 0.62625 0.00035339 0.6169 0.00034811 1.2432 0.0007015 564.2905783409607 47.461 0.47355 47.461 47.171 47.644 0 66 21 5 0 0 0 0.54684 1 25869 25869 13.906 3.0821 1 108870000 59392 6744 39684 40573 69158 69158 0.007654217520894235 SLQMAKLHV 9 Unmodified _SLQMAKLHV_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7914428710938 2 513.791869 1025.56919 0.46675 0.00023981 -1.0499 -0.00053942 -0.58314 -0.00029961 513.7911667763733 39.176 0.34454 39.188 39.021 39.366 0.011452 50 15 4 0 0 0 0.59218 1 20919 20919 1.8442 0 1 13916000 + 59393 22854 39685 40574 69159 69159 0.05742393325090234 SLQMAKLHV 9 Unmodified _SLQMAKLHV_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.791869 1025.56919 -0.11271 -5.791E-05 -0.48757 -0.00025051 -0.60028 -0.00030842 514.293056720081 39.529 0.19728 39.232 39.154 39.351 -0.29716 0.021996 0.00045531 NaN 1.8442 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 880650 + 59394 22854 39685 40574 0.05742393325090234 SLQNIFFYMPT 11 Unmodified _SLQNIFFYMPT_ 0 0 0 REV__ENSG00000184022|ENST00000642090|OR2T10 REV__ENSG00000184022|ENST00000642090|OR2T10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.332275390625 2 680.833931 1359.65331 0.37994 0.00025868 -0.38467 -0.00026189 -0.0047239 -3.2162E-06 680.8338677607445 63.799 0.23623 63.314 63.105 63.341 -0.48512 15 10 2 0 0 0 0.30452 1 34746 34746 3.2813 0 1 2631900 + 59395 23393 39686 40575 69160 69160 -0.012131203686749359 SLQNIFFYMPT 11 Unmodified _SLQNIFFYMPT_ 0 0 0 REV__ENSG00000184022|ENST00000642090|OR2T10 REV__ENSG00000184022|ENST00000642090|OR2T10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.3317260742188 2 680.833931 1359.65331 0.4593 0.00031271 -0.4825 -0.0003285 -0.023196 -1.5793E-05 680.831772412769 63.878 0.084454 63.393 63.374 63.458 -0.48512 6 5 2 0 0 0 0.30139 1 34854 34854 5.7319 0 1 2073600 + 59396 23393 39686 40575 69161 69161 -0.012131203686749359 SLQNSHFYM 9 Unmodified _SLQNSHFYM_ 0 0 0 REV__nc|ENSG00000108506|Q9H0H0|INTS2 REV__nc|ENSG00000108506|Q9H0H0|INTS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7993774414062 2 563.752941 1125.49133 0.75001 0.00042282 0.87216 0.00049169 1.6222 0.00091451 563.7531680837463 72.154 0.28549 71.678 71.549 71.834 -0.47609 34 12 4 0 0 0 0.16895 1 39425 39425 24.021 14.637 1 3314500 + 59397 18610 39687 40576 69162 69162 -0.06639664330941741 SLQNSHFYM 9 Unmodified _SLQNSHFYM_ 0 0 0 REV__nc|ENSG00000108506|Q9H0H0|INTS2 REV__nc|ENSG00000108506|Q9H0H0|INTS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.752941 1125.49133 0.0549 3.095E-05 1.7146 0.00096662 1.7695 0.00099757 563.7534496547756 71.652 0.18602 71.652 71.548 71.734 0 -0.012686 0.00084539 NaN 24.021 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 475740 + 59398 18610 39687 40576 -0.06639664330941741 SLQPRLTI 8 Unmodified _SLQPRLTI_ 0 0 0 REV__ENSG00000188649|ENST00000646931|CC2D2B REV__ENSG00000188649|ENST00000646931|CC2D2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 464.7423095703125 2 464.284734 926.554916 0.7726 0.00035871 -0.83684 -0.00038853 -0.06424 -2.9826E-05 464.2846283216823 57.035 0.24225 51.058 50.957 51.2 -5.9769 18 14 2 0 0 0 8.7369 1 36403 36403 39.95 7.164 1 12851000 + 59399 23722 39688 40577 69163 69163 0.08870064168456793 SLQPSPPP 8 Unmodified _SLQPSPPP_ 0 0 0 nc|ENSG00000050628|P43115-12|PTGER3 nc|ENSG00000050628|P43115-12|PTGER3 nc|ENSG00000050628|P43115-12|PTGER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.720947265625 2 411.721436 821.428318 0.52826 0.00021749 -0.81181 -0.00033424 -0.28356 -0.00011675 411.7211718506199 54.123 0.34789 54.123 53.923 54.271 0 36 15 3 0 0 0 0.55032 1 30091 30091 30.225 0 1 8650500 59400 16030 39689 40578 69164 69164 0.010461379433309048 SLQQSKLKE 9 Unmodified _SLQQSKLKE_ 0 0 0 REV__ENSG00000015133|ENST00000389857|CCDC88C REV__ENSG00000015133|ENST00000389857|CCDC88C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.297607421875 2 530.803488 1059.59242 0.34906 0.00018528 4.1932 0.0022258 4.5423 0.0024111 530.8067899877642 70.897 0.34077 70.42 70.248 70.589 -0.47735 23 15 2 0 0 0 0.20358 1 38742 38742 10.074 3.8681 1 2354500 + 59401 17084 39690 40579 69165 69165 0.0650111064342127 SLQQSKLKE 9 Unmodified _SLQQSKLKE_ 0 0 0 REV__ENSG00000015133|ENST00000389857|CCDC88C REV__ENSG00000015133|ENST00000389857|CCDC88C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.803488 1059.59242 0.67864 0.00036022 2.0097 0.0010668 2.6884 0.001427 530.8050454071334 70.324 0.25812 70.359 70.291 70.549 0.035507 -0.030214 -0.00052131 NaN 6.2058 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1137300 + 59402 17084 39690 40579 0.0650111064342127 SLQRPNPCGF 10 Unmodified _SLQRPNPCGF_ 0 0 0 REV__ENST00000519231.5_1_8:66693177-66754193:-|nuORF REV__ENST00000519231.5_1_8:66693177-66754193:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7738037109375 2 559.774208 1117.53386 0.67437 0.0003775 -0.19771 -0.00011067 0.47666 0.00026682 559.7735471088179 86.554 0.33579 86.05 85.906 86.242 -0.50318 26 13 3 0 0 0 0.6606 1 47421 47421 7.2892 1.5288 1 824710 + 59403 24218 39691 40580 69166 69166 -0.020202692027169178 SLQRVHFGF 9 Unmodified _SLQRVHFGF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;FAXC-ASCC3|1|fusion ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7921752929688 2 545.793258 1089.57196 NaN NaN NaN NaN NaN NaN NaN 65.824 1 65.339 64.839 65.839 -0.48428 0 0 0 0.6032 1 35934 35934 12.532 0.89125 1 59404 2874 39692 40581 69167 69167 0.030759847742729107 SLQRVHFGF 9 Unmodified _SLQRVHFGF_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3;FAXC-ASCC3|1|fusion ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.77392578125 2 545.793258 1089.57196 -0.42817 -0.00023369 0.2303 0.0001257 -0.19788 -0.000108 545.7933534868091 76.942 0.44095 76.463 76.235 76.676 -0.47945 66 19 5 0 0 0 0.21798 1 42003 42003 2.3027 0 1 7646900 59405 2874 39692 40581 69168 69168 0.030759847742729107 SLQRYPGI 8 Unmodified _SLQRYPGI_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2625732421875 2 467.261259 932.507966 1.5914 0.00074359 -0.35364 -0.00016524 1.2377 0.00057834 467.26092018229247 41.664 0.26739 37.057 36.969 37.237 -4.6079 20 16 2 0 0 0 0.42423 1 25100 25100 42.095 5.9675 1 4052400 59406 8441 39693 40582 69169 69169 0.03901204617318399 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2680358886719 2 459.26875 916.522947 0.37464 0.00017206 -0.88194 -0.00040505 -0.5073 -0.00023299 459.26805446412976 70.261 0.28628 70.261 70.139 70.425 0 25 12 3 0 0 0 0.41742 1 39150 39150 11.64 3.047 1 1612400 59407 2082 39694 40583 69170 69170 0.06134651694674176 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2685852050781 2 459.26875 916.522947 0.21469 9.8602E-05 -0.4786 -0.0002198 -0.2639 -0.0001212 459.2683710445032 70.741 0.37684 70.263 70.083 70.459 -0.47735 60 24 4 0 0 0 0.095405 1 38741 38741 34.102 5.6156 1 17825000 59408 2082 39694 40583 69171 69171 0.06134651694674176 SLQSTILGV 9 Unmodified _SLQSTILGV_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 917.529541015625 1 917.530224 916.522947 0.047439 4.3527E-05 -1.6115 -0.0014786 -1.5641 -0.0014351 917.5300528319287 70.627 0.38605 70.15 70.025 70.411 -0.47736 42 29 2 0 0 0 0.06294 1 38762 38762 41.84 1.8823 1 6176400 59409 2082 39694 40583 69172 69172 0.06134651694674176 SLQVETLYL 9 Unmodified _SLQVETLYL_ 0 0 0 ENST00000323146.7_1_5:139946353-139946686:+|nuORF ENST00000323146.7_1_5:139946353-139946686:+|nuORF ENST00000323146.7_1_5:139946353-139946686:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2960815429688 2 533.294965 1064.57538 0.89242 0.00047592 -0.28383 -0.00015136 0.60859 0.00032456 533.295137038937 90.038 0.59346 83.863 83.562 84.156 -6.1757 65 33 3 0 0 0 0.013041 1 59384 59384 71.922 13.243 1 20484000 59410 11793 39695 40584 69173 69173 0.04567190037596447 SLQVVTLSA 9 Unmodified _SLQVVTLSA_ 0 0 0 REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1 REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2685546875 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 67.583 1 67.1 66.6 67.6 -0.48218 0 0 0 0.50124 1 36925 36925 15.847 5.6638 1 + 59411 20966 39696 40585 69174 69174 0.06134651694662807 SLQYNLTVL 9 Unmodified _SLQYNLTVL_ 0 0 0 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 ENSG00000112367|ENST00000230124|FIG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2965087890625 2 525.795132 1049.57571 0.38828 0.00020415 0.50885 0.00026755 0.89713 0.00047171 525.7954147642776 86.604 0.33579 86.101 85.906 86.242 -0.50318 22 13 2 0 0 0 0.41742 1 47345 47345 11.64 0.81637 1 723670 59412 2888 39697 40586 69175 69175 0.05290609757457787 SLRCPQGSVF 10 Unmodified _SLRCPQGSVF_ 0 0 0 REV__ENST00000535516.5_1_13:111298710-111298890:-|nuORF REV__ENST00000535516.5_1_13:111298710-111298890:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2747802734375 2 547.276583 1092.53861 0.4523 0.00024753 -1.6983 -0.00092942 -1.246 -0.00068189 547.2756745430952 30.403 0.3134 30.323 30.232 30.546 -0.080431 24 11 3 0 0 0 0.29752 1 15801 15801 27.629 0 1 2391800 + 59413 28528 39698 40587 69176 69176 -0.003953850599373254 SLRHRLKRIQL 11 Unmodified _SLRHRLKRIQL_ 0 0 0 REV__ENSG00000254440|ENST00000527246|PBOV1 REV__ENSG00000254440|ENST00000527246|PBOV1 MSMS AL20221201_MKP_PDAC_01 4 473.9711608886719 3 473.972155 1418.89463 NaN NaN NaN NaN NaN NaN NaN 10.117 1 7.6346 7.1346 8.1346 -2.482 0 0 0 0.94337 1 5097 5097 0.094841 0 1 + 59414 24522 39699 40588 69177 69177 0.2019429617332662 SLRKGSSC 8 Unmodified _SLRKGSSC_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.2170104980469 2 419.215995 836.417436 1.1931 0.00050016 1.2044 0.0005049 2.3975 0.0010051 419.21675768254573 59.704 0.3068 53.59 53.394 53.701 -6.1147 24 16 2 0 0 0 0.55032 1 38285 38285 30.225 0 1 23050000 + 59415 29680 39700 40589 69178 69178 -0.007315877025916961 SLRKPRRRWYW 11 Unmodified _SLRKPRRRWYW_ 0 0 0 REV__ENSG00000172935|ENST00000309099|MRGPRF REV__ENSG00000172935|ENST00000309099|MRGPRF MSMS AL20221201_MKP_PDAC_01 4 802.4589233398438 2 802.457668 1602.90078 NaN NaN NaN NaN NaN NaN NaN 83.424 1 77.249 76.749 77.749 -6.1757 0 0 0 0.94165 1 54855 54855 1.3295 0.13619 1 + 59416 22689 39701 40590 69179 69179 0.12344814404832505 SLRKRSLKHL 10 Unmodified _SLRKRSLKHL_ 0 0 0 ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ENSG00000047936|ENST00000368507|ROS1 ENSG00000047936|ENST00000368507|ROS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2664184570312 3 413.266568 1236.77787 NaN NaN NaN NaN NaN NaN NaN 73.004 1 72.528 72.028 73.028 -0.47588 0 0 0 0.98914 1 39951 39951 0.77653 0 1 59417 695 39702 40591 69180 69180 0.1689555795353499 SLRKVKLMF 9 Unmodified _SLRKVKLMF_ 0 0 0 ENSG00000065615|ENST00000369681|CYB5R4 ENSG00000065615|ENST00000369681|CYB5R4 ENSG00000065615|ENST00000369681|CYB5R4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5663757324219 3 374.566967 1120.67907 0.27989 0.00010484 -1.3536 -0.00050701 -1.0737 -0.00040218 374.56624255562076 62.759 0.32861 62.737 62.56 62.888 -0.021614 38 16 3 0 0 0 0.59218 1 34305 34305 0.96228 0 1 8829300 59418 911 39703 40592 69181 69181 0.12355818664309481 SLRLLNLVY 9 Unmodified _SLRLLNLVY_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3023681640625 2 545.834591 1089.65463 0.29481 0.00016092 0.6322 0.00034508 0.92702 0.000506 545.8350417382499 59.717 0.26208 59.663 59.535 59.797 -0.053059 35 12 4 0 0 0 0.18882 1 32616 32616 10.824 0.024421 1 24300000 59419 3096 39704 40593 69182 69182 0.11338881782398857 SLRNKDIKEAF 11 Unmodified _SLRNKDIKEAF_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.86865234375 2 660.867151 1319.71975 0.88973 0.000588 -2.1084 -0.0013934 -1.2187 -0.00080541 660.8660571379035 70.255 0.73802 70.29 69.96 70.698 0.035515 86 35 3 0 0 0 0.53952 1 38619 38619 14.405 2.9107 1 4431200 59420 8219 39705 40594 69183 69183 0.07267831517606282 SLRNKDIKEAF 11 Unmodified _SLRNKDIKEAF_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MSMS AL20221201_MKP_PDAC_01 4 660.8655395507812 2 660.867151 1319.71975 NaN NaN NaN NaN NaN NaN NaN 87.088 1 80.913 80.413 81.413 -6.1757 0 0 0 0.5508 1 57415 57415 22.658 6.509 1 59421 8219 39705 40594 69184 69184 0.07267831517606282 SLRNKDIKEAF 11 Unmodified _SLRNKDIKEAF_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MSMS AL20221201_MKP_PDAC_01 4 660.8662719726562 2 660.867151 1319.71975 NaN NaN NaN NaN NaN NaN NaN 87.275 1 81.1 80.6 81.6 -6.1757 0 0 0 0.68775 1 57546 57546 17.443 4.4002 1 59422 8219 39705 40594 69185 69185 0.07267831517606282 SLRNKDIKEAF 11 Unmodified _SLRNKDIKEAF_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MSMS AL20221201_MKP_PDAC_01 4 660.8659057617188 2 660.867151 1319.71975 NaN NaN NaN NaN NaN NaN NaN 87.462 1 81.286 80.786 81.786 -6.1757 0 0 0 0.6061 1 57675 57675 20.581 3.468 1 59423 8219 39705 40594 69186 69186 0.07267831517606282 SLRNKDIKEAF 11 Unmodified _SLRNKDIKEAF_ 0 0 0 ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 ENSG00000172457|ENST00000641668|OR9G4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 660.867151 1319.71975 0.42036 0.0002778 -1.7733 -0.0011719 -1.3529 -0.00089412 660.8662653801024 70.844 0.47283 70.367 70.186 70.659 -0.47735 0.038275 0.0002348 NaN 14.405 32 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1035200 59424 8219 39705 40594 0.07267831517606282 SLRNQLCP 8 Unmodified _SLRNQLCP_ 0 0 0 REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF REV__ENST00000534093.5_3_11:62379321-62382308:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.4835205078125 1 930.482562 929.475285 3.0795 0.0028654 -2.2956 -0.002136 0.78388 0.00072938 930.4804135489661 97.11 0.67747 97.103 96.826 97.503 -0.007019 62 25 3 0 0 0 0.78849 1 54145 54145 9.3474 0 1 23123000 + 59425 20999 39706 40595 69187 69187 0.007726742228214789 SLRNRQSL 8 Unmodified _SLRNRQSL_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2817993164062 2 487.280515 972.546476 NaN NaN NaN NaN NaN NaN NaN 66.979 1 66.979 66.479 67.479 0 0 0 0 0.97348 1 37355 37355 5.7604 0 1 59426 9779 39707 40596 69188 69188 0.05910510251840151 SLRQGQNWSP 10 Unmodified _SLRQGQNWSP_ 0 0 0 REV__ENST00000515434.1_1_3:123337477-123339366:-|nuORF REV__ENST00000515434.1_1_3:123337477-123339366:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5346069335938 3 391.53175 1171.57342 1.9558 0.00076575 3.2937 0.0012896 5.2495 0.0020553 391.53315016786166 94.859 0.4213 94.873 94.695 95.116 0.014244 25 15 2 0 0 0 0.71413 1 52730 52730 0.56317 0 1 3258100 + 59427 28217 39708 40597 69189 69189 -0.005504259276449375 SLRQILRHKRK 11 Unmodified _SLRQILRHKRK_ 0 0 0 ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4832763671875 4 359.48366 1433.90553 0.3763 0.00013527 -1.614 -0.00058022 -1.2377 -0.00044495 359.48308998931964 38.916 0.28082 38.916 38.834 39.115 0 17 12 2 0 0 0 0.7414 1 20898 20898 0.36667 0.29341 1 1541700 59428 14984 39709 40598 69190 69190 0.20593698547577333 SLRQILRHKRK 11 Unmodified _SLRQILRHKRK_ 0 0 0 ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF ENST00000537025.6_1_17:66040173-66040476:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 359.48366 1433.90553 0.15574 5.5984E-05 -1.3729 -0.00049352 -1.2171 -0.00043753 359.4831731615929 39.129 0.21657 39.141 39.021 39.238 0.011452 0.11264 0.00022593 NaN 0.36667 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 802970 59429 14984 39709 40598 0.20593698547577333 SLRQLRGPRL 10 Unmodified _SLRQLRGPRL_ 0 0 0 REV__ENST00000590940.5_1_19:10229208-10229560:-|nuORF REV__ENST00000590940.5_1_19:10229208-10229560:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2509460449219 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 74.961 1 75.006 74.506 75.506 0.045959 0 0 0 1.0009 1 41329 41329 0.56317 0.057215 1 + 59430 29155 39710 40599 69191 69191 0.14134698402403956 SLRRLRMF 8 Unmodified _SLRRLRMF_ 0 0 0 REV__ENST00000460731.5_1_7:77166863-77213036:+|nuORF REV__ENST00000460731.5_1_7:77166863-77213036:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.28662109375 2 539.818753 1077.62295 1.318 0.00071149 0.047861 2.5836E-05 1.3659 0.00073733 539.8193379587063 90.733 0.17033 84.558 84.474 84.644 -6.1757 16 9 2 0 0 0 8.7369 1 59888 59888 13.508 0.97634 1 14107000 + 59431 19594 39711 40600 69192 69192 0.0872461054748328 SLRRRRRKRS 10 Unmodified _SLRRRRRKRS_ 0 0 0 ENST00000521506.1_1_5:171681851-171682091:-|nuORF ENST00000521506.1_1_5:171681851-171682091:-|nuORF ENST00000521506.1_1_5:171681851-171682091:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1371.035888671875 1 1370.86759 1369.86031 0.063442 8.6971E-05 0.54808 0.00075135 0.61152 0.00083832 1370.8686793350719 65.629 0.096382 59.453 59.414 59.51 -6.1757 7 5 2 0 0 0 0.24008 1 42623 42623 0 0 1 17211000 59432 14744 39712 40601 69193 69193 0.19017892805049996 SLRRRRRRRRR 11 Unmodified _SLRRRRRRRRR_ 0 0 0 REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.5223388671875 2 812.525605 1623.03666 NaN NaN NaN NaN NaN NaN NaN 65.469 1 64.985 64.485 65.485 -0.48428 0 0 0 0.9435 1 35734 35734 0 0 1 + 59433 26166 39713 40602 69194 69194 0.2500594675884713 SLRSFMVLI 9 Unmodified _SLRSFMVLI_ 0 0 0 ENST00000376936.8_1_1:11142907-11147536:-|nuORF ENST00000376936.8_1_1:11142907-11147536:-|nuORF ENST00000376936.8_1_1:11142907-11147536:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.3137817382812 2 533.309895 1064.60524 NaN NaN NaN NaN NaN NaN NaN 65.38 1 59.204 58.704 59.704 -6.1757 0 0 0 0.43483 1 42432 42432 18.146 0 1 59434 12511 39714 40603 69195 69195 0.07551850501977242 SLRSSYCSMLR 11 Unmodified _SLRSSYCSMLR_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825378417969 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 24.011 1 24.011 23.511 24.511 0 0 0 0 0.93969 1 12254 12254 1.1098 0 1 59435 9681 39715 40604 69196 69196 -0.016720166743880327 SLRSVLFSLL 10 Unmodified _SLRSVLFSLL_ 0 0 0 ENST00000255977.6_2_7:140154087-140154351:-|nuORF ENST00000255977.6_2_7:140154087-140154351:-|nuORF ENST00000255977.6_2_7:140154087-140154351:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.9013671875 3 378.900891 1133.68084 0.096632 3.6614E-05 0.60532 0.00022936 0.70195 0.00026597 378.9011396269419 51.746 0.22195 51.687 51.592 51.814 -0.058918 17 10 2 0 0 0 0.67033 1 28037 28037 5.7834 0 1 1288900 59436 11175 39716 40605 69197 69197 0.1193515095390012 SLRTCIIGV 9 Unmodified _SLRTCIIGV_ 0 0 0 REV__ENSG00000103507|ENST00000219794|BCKDK REV__ENSG00000103507|ENST00000219794|BCKDK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2794799804688 2 481.278595 960.542637 -0.10151 -4.8855E-05 -0.90739 -0.00043671 -1.0089 -0.00048556 481.2782873649333 51.448 0.49035 51.394 51.266 51.756 -0.053871 35 24 3 0 0 0 0.14 1 27833 27833 29.082 0 1 2897800 + 59437 18310 39717 40606 69198 69198 0.060787044337757834 SLRTNHQGTY 10 Unmodified _SLRTNHQGTY_ 0 0 0 nc|ENSG00000007255|O75865-2|TRAPPC6A;ENSG00000007255|ENST00000585934|TRAPPC6A nc|ENSG00000007255|O75865-2|TRAPPC6A nc|ENSG00000007255|O75865-2|TRAPPC6A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.80224609375 2 588.791444 1175.56833 0.68994 0.00040623 0.11122 6.5486E-05 0.80116 0.00047172 588.7922463223669 64.865 0.28059 64.865 64.697 64.978 1.5259E-05 44 13 4 0 0 0 0.23489 1 35598 35598 8.7454 3.0136 1 16865000 59438 362 39718 40607 69199 69199 -0.012427297902377177 SLRVCNSLNL 10 Unmodified _SLRVCNSLNL_ 0 0 0 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.8010864257812 2 559.802965 1117.59138 -0.11989 -6.7117E-05 -2.496 -0.0013973 -2.6159 -0.0014644 560.3032572722034 33.376 0.15114 33.376 33.264 33.415 0 13 7 2 0 0 0 0.30444 1 17494 17494 27.223 4.487 1 2472800 + 59439 21583 39719 40608 69200 69200 0.037285730028543185 SLRVCNSLNL 10 Unmodified _SLRVCNSLNL_ 0 0 0 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 559.802965 1117.59138 -0.11989 -6.7117E-05 -2.496 -0.0013973 -2.6159 -0.0014644 560.3032572722034 33.376 0.15114 33.376 33.264 33.415 0 0.059521 -0.00086945 NaN 27.223 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2472800 + 59440 21583 39719 40608 0.037285730028543185 SLRVCNSLNL 10 Unmodified _SLRVCNSLNL_ 0 0 0 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 REV__nc|ENSG00000161040|Q8NEE6-3|FBXL13 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.802965 1117.59138 -0.061214 -3.4268E-05 -0.91495 -0.00051219 -0.97617 -0.00054646 559.8021018861834 33.416 0.17329 33.257 33.196 33.369 -0.15918 -0.059521 0.00090072 NaN 27.223 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 756380 + 59441 21583 39719 40608 0.037285730028543185 SLRYHGLLI 9 Unmodified _SLRYHGLLI_ 0 0 0 REV__nc|ENSG00000112146|Q9UK97-3|FBXO9 REV__nc|ENSG00000112146|Q9UK97-3|FBXO9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8811950683594 3 357.881831 1070.62366 NaN NaN NaN NaN NaN NaN NaN 26.615 1 26.642 26.142 27.142 0.026951 0 0 0 0.58748 1 13810 13810 13.042 4.2971 1 + 59442 18789 39720 40609 69201 69201 0.09117728468186215 SLSDALISL 9 Unmodified _SLSDALISL_ 0 0 0 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1;ENSG00000061676|ENST00000361354|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 nc|ENSG00000061676|Q9Y2A7-2|NCKAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.5142211914062 1 918.514239 917.506963 0.11577 0.00010634 0.40904 0.00037571 0.52481 0.00048205 918.5147713899764 82.556 0.23972 82.556 82.434 82.673 0 11 9 2 0 0 0 0.2143 1 45797 45797 21.747 0 1 452900 59443 840 39721 40610 69202 69202 0.04490945457757789 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7900390625 2 498.78985 995.565146 0.42199 0.00021048 -0.26884 -0.0001341 0.15314 7.6385E-05 498.7897900279014 68.987 0.43909 68.987 68.764 69.203 0 75 18 5 0 0 0 0.016184 2 38470 38374;38470 67.344 22.937 1 29019000 59444 319 39722 40611 69203;69204 69204 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7900390625 2 498.78985 995.565146 -0.10823 -5.3985E-05 0.71775 0.00035801 0.60952 0.00030402 498.7901808488273 69.364 0.67294 68.885 68.53 69.203 -0.47903 107 28 5 0 0 0 0.026094 3 37837 37837;37936;38040 57.471 23.369 1 95211000 59445 319 39722 40611 69205;69206;69207 69205 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7900390625 2 498.78985 995.565146 0.69671 0.00034751 0.32337 0.00016129 1.0201 0.0005088 498.7901203091069 68.807 0.30295 68.832 68.701 69.004 0.025146 32 13 3 0 0 0 0.010877 1 37811 37811 77.984 24.409 1 5746200 59446 319 39722 40611 69208 69208 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7906799316406 2 498.78985 995.565146 0.99233 0.00049496 0.206 0.00010275 1.1983 0.00059771 498.789799023825 73.955 0.43176 67.78 67.512 67.944 -6.1757 34 21 2 0 0 0 0.026094 1 48351 48351 57.471 15.377 1 17186000 59447 319 39722 40611 69209 69209 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7898559570312 2 498.78985 995.565146 1.065 0.0005312 -0.38723 -0.00019315 0.67773 0.00033805 498.78975294675627 74.89 1.3751 68.715 67.944 69.319 -6.1757 136 73 2 0 0 0 0.010877 7 48644 48516;48644;48764;48892;49024;49144;49281 77.984 27.129 1 28391000 59448 319 39722 40611 69210;69211;69212;69213;69214;69215;69216 69211 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7902221679688 2 498.78985 995.565146 0.87889 0.00043838 -0.2164 -0.00010794 0.66249 0.00033044 498.7898085682101 77.82 0.92732 71.644 70.955 71.882 -6.1757 68 53 2 0 0 0 0.010877 3 50759 50759;50872;51004 77.984 27.129 1 14253000 59449 319 39722 40611 69217;69218;69219 69217 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7902526855469 2 498.78985 995.565146 0.82374 0.00041087 -1.1452 -0.00057121 -0.32146 -0.00016034 498.789507632059 82.115 1.8809 75.939 74.909 76.79 -6.1757 216 106 3 0 0 0 0.010877 8 54057 53401;53538;53671;53792;53923;54057;54207;54347 77.984 25.249 1 35658000 59450 319 39722 40611 69220;69221;69222;69223;69224;69225;69226;69227 69225 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MSMS AL20221201_MKP_PDAC_01 4 498.7894592285156 2 498.78985 995.565146 NaN NaN NaN NaN NaN NaN NaN 80.192 1 74.016 73.516 74.516 -6.1757 0 0 0 0.050352 1 52603 52603 57.471 5.1371 1 59451 319 39722 40611 69228 69228 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MSMS AL20221201_MKP_PDAC_01 4 498.7891540527344 2 498.78985 995.565146 NaN NaN NaN NaN NaN NaN NaN 80.524 1 74.348 73.848 74.848 -6.1757 0 0 0 0.029091 1 52834 52834 67.344 6.9543 1 59452 319 39722 40611 69229 69229 0.06718627103043673 SLSDHIVLL 9 Unmodified _SLSDHIVLL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MSMS AL20221201_MKP_PDAC_01 4 498.7891845703125 2 498.78985 995.565146 NaN NaN NaN NaN NaN NaN NaN 80.705 1 74.529 74.029 75.029 -6.1757 0 0 0 0.029091 1 52953 52953 67.344 3.2629 1 59453 319 39722 40611 69230 69230 0.06718627103043673 SLSEVQALV 9 Unmodified _SLSEVQALV_ 0 0 0 ENSG00000011114|ENST00000334746|BTBD7;ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2647094726562 2 473.266207 944.517862 0.24036 0.00011376 -0.64713 -0.00030626 -0.40677 -0.00019251 473.2656804485965 64.342 0.52036 64.342 63.953 64.473 0 34 22 2 0 0 0 0.30562 1 35776 35776 16.942 4.4107 1 1278300 59454 434 39723 40612 69231 69231 0.043383478320379254 SLSFLFEYI 9 Unmodified _SLSFLFEYI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7919311523438 2 559.792058 1117.56956 NaN NaN NaN NaN NaN NaN NaN 64.524 1 64.038 63.538 64.538 -0.48512 0 0 0 0.43505 1 35202 35202 18.135 0 1 59455 3132 39724 40613 69232 69232 0.015480915259331596 SLSFMNPRL 9 Oxidation (M) _SLSFM(Oxidation (M))NPRL_ SLSFM(1)NPRL SLSFM(52)NPRL 0 0 1 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7807006835938 2 540.778959 1079.54336 0.16934 9.1578E-05 0.77404 0.00041858 0.94338 0.00051016 540.7794816302846 51.078 0.28449 51.024 50.862 51.147 -0.053871 28 13 3 0 0 0 0.03568 1 27593 27593 52.268 30.522 1 3933300 59456 9317 39725 40614 69233 69233 1536 0.006774990828262162 SLSFMNPRL 9 Oxidation (M) _SLSFM(Oxidation (M))NPRL_ 0 0 1 ENSG00000185009|ENST00000355264|AP3M1;ENST00000480373.1_1_10:75888732-75889691:-|nuORF ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.778959 1079.54336 0.098071 5.3035E-05 -1.9434 -0.001051 -1.8453 -0.00099792 540.7781739059275 51.057 0.22073 50.643 50.518 50.738 -0.41351 -0.19046 -0.0025811 NaN 52.268 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1082800 59457 9317 39725 40614 1536 0.006774990828262162 SLSFRLMCQ 9 Unmodified _SLSFRLMCQ_ 0 0 0 REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1825256347656 3 362.180783 1083.52052 NaN NaN NaN NaN NaN NaN NaN 22.089 1 22.089 21.589 22.589 0 0 0 0 0.84737 1 11224 11224 0.96228 0.33545 1 + 59458 19491 39726 40615 69234 69234 -0.01789843306301009 SLSFVRGRQ 9 Unmodified _SLSFVRGRQ_ 0 0 0 REV__ENST00000409600.5_1_2:201685953-201685992:+|nuORF REV__ENST00000409600.5_1_2:201685953-201685992:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1049.923828125 1 1049.58505 1048.57778 0.98138 0.00103 2.4731 0.0025958 3.4545 0.0036258 1050.592066986049 89.098 0.25922 82.922 82.763 83.022 -6.1757 15 14 2 0 0 0 0.15672 1 58851 58851 20.454 0.039092 1 14148000 + 59459 26694 39727 40616 69235 69235 0.05543083285942885 SLSGCAHHDED 11 Unmodified _SLSGCAHHDED_ 0 0 0 ENST00000492502.2_1_10:73975698-73975956:-|nuORF ENST00000492502.2_1_10:73975698-73975956:-|nuORF ENST00000492502.2_1_10:73975698-73975956:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.8218688964844 3 390.82086 1169.44075 0.03695 1.4441E-05 1.1705 0.00045745 1.2074 0.00047189 390.8217491835188 81.834 0.26391 81.834 81.674 81.938 0 36 14 3 0 0 0 0.73115 1 45396 45396 0.45452 0 1 1581400 59460 14294 39728 40617 69236 69236 -0.1371923844660614 SLSHNPIEAI 10 Unmodified _SLSHNPIEAI_ 0 0 0 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.290771484375 2 540.787838 1079.56112 0.40725 0.00022024 0.43458 0.00023502 0.84183 0.00045525 541.2875861526626 82.703 0.65091 82.206 81.816 82.467 -0.49751 95 27 5 0 0 0 0.5905 1 45374 45374 11.64 0 1 2636800 59461 9453 39729 40618 69237 69237 0.024525376093151863 SLSILHSSW 9 Unmodified _SLSILHSSW_ 0 0 0 REV__ENSG00000251380|ENST00000503143|DCANP1 REV__ENSG00000251380|ENST00000503143|DCANP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7377319335938 2 515.271824 1028.5291 0.32443 0.00016717 -0.35621 -0.00018354 -0.031778 -1.6374E-05 515.2716911930096 37.194 0.22147 37.194 37.037 37.259 0 17 10 2 0 0 0 0.20727 1 19789 19789 4.3292 0 1 2049200 + 59462 24506 39730 40619 69238 69238 0.015971699261854155 SLSKDTVLSF 10 Unmodified _SLSKDTVLSF_ 0 0 0 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 MSMS AL20221201_MKP_PDAC_01 4 366.5301513671875 3 366.201007 1095.58119 NaN NaN NaN NaN NaN NaN NaN 59.253 1 53.179 52.679 53.679 -6.0745 0 0 0 0.7417 1 38025 38025 8.9762 1.4992 1 + 59463 29486 39731 40620 69239 69239 0.03722288549283803 SLSKDTVLSF 10 Unmodified _SLSKDTVLSF_ 0 0 0 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 MSMS AL20221201_MKP_PDAC_01 4 365.8823852539062 3 366.201007 1095.58119 NaN NaN NaN NaN NaN NaN NaN 79.858 1 73.683 73.183 74.183 -6.1757 0 0 0 0.7417 1 52363 52363 8.9762 0 1 + 59464 29486 39731 40620 69240 69240 0.03722288549283803 SLSLQPQL 8 Unmodified _SLSLQPQL_ 0 0 0 ENSG00000006638|ENST00000375190|TBXA2R ENSG00000006638|ENST00000375190|TBXA2R ENSG00000006638|ENST00000375190|TBXA2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2571105957031 2 443.255643 884.496732 0.67594 0.00029961 1.1077 0.00049097 1.7836 0.00079059 443.25612780175686 29.993 0.26287 26.51 26.363 26.626 -3.4825 19 12 2 0 0 0 0.46677 1 16872 16872 37.974 0 1 30465000 59465 343 39732 40621 69241 69241 0.049863825231796 SLSMVNHRL 9 Unmodified _SLSMVNHRL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF;ENST00000507771.5_1_17:48154781-48156326:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8590393066406 3 352.858809 1055.5546 1.3055 0.00046064 -0.14108 -4.9783E-05 1.1644 0.00041086 352.85883860091053 35.391 0.40147 31.296 31.09 31.491 -4.0951 41 24 2 0 0 0 0.08691 1 20469 20469 27.223 17.073 1 22920000 59466 319 39733 40622 69242 69242 0.029043211769703703 SLSNSHEKNQS 11 Unmodified _SLSNSHEKNQS_ 0 0 0 nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A nc|ENSG00000148396|O15027-2|SEC16A nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.291748046875 2 615.789098 1229.56364 0.4007 0.00024675 -0.26332 -0.00016215 0.13738 8.4598E-05 615.788504809523 85.516 0.4062 85.516 85.317 85.723 0 40 16 3 0 0 0 0.7187 1 47332 47332 2.4985 0.84587 1 959720 59467 5929 39734 40623 69243 69243 -0.04195658723665474 SLSNYAFLY 9 Unmodified _SLSNYAFLY_ 0 0 0 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.764892578125 2 539.266207 1076.51786 0.35373 0.00019076 -0.93522 -0.00050433 -0.58149 -0.00031358 539.2667947560266 69.005 0.28886 69.005 68.838 69.127 0 19 12 2 0 0 0 0.48152 1 38474 38474 8.5933 0 1 975340 59468 6978 39735 40624 69244 69244 -0.017336521679453654 SLSPIIGKDVL 11 Unmodified _SLSPIIGKDVL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8082275390625 2 571.344989 1140.67542 0.13276 7.5849E-05 1.5545 0.00088817 1.6873 0.00096402 571.3460176396068 55.245 0.19901 55.176 55.019 55.218 -0.068741 13 9 2 0 0 0 0.28456 1 30032 30032 11.495 3.3392 1 1168400 59469 1487 39736 40625 69245 69245 0.11071427371439313 SLSPLCPPSL 10 Unmodified _SLSPLCPPSL_ 0 0 0 ENST00000486996.5_1_20:30457849-30457969:-|nuORF;ENST00000398084.6_1_20:30450513-30457969:-|nuORF ENST00000486996.5_1_20:30457849-30457969:-|nuORF ENST00000486996.5_1_20:30457849-30457969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2723083496094 2 507.270435 1012.52632 -0.34909 -0.00017708 1.6889 0.00085673 1.3398 0.00067965 507.2715361265756 23.356 0.16235 23.368 23.317 23.479 0.012394 10 7 2 0 0 0 0.35903 1 11950 11950 24.021 0.87215 1 2538200 59470 12841 39737 40626 69246 69246 0.020555784770067476 SLSQPGTDLR 10 Unmodified _SLSQPGTDLR_ 0 0 0 REV__ENST00000594213.5_1_19:6380485-6381059:-|nuORF REV__ENST00000594213.5_1_19:6380485-6381059:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 537.283935546875 2 537.28292 1072.55129 NaN NaN NaN NaN NaN NaN NaN 24.704 1 21.821 21.321 22.321 -2.8831 0 0 0 0.85122 1 13466 13466 10.074 0 1 + 59471 19505 39738 40627 69247 69247 0.017913496039454913 SLSSFLNGSL 10 Unmodified _SLSSFLNGSL_ 0 0 0 REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3;REV__nc|ENSG00000152990|Q8IWK6-2|ADGRA3 REV__nc|ENSG00000152990|Q8IWK6-3|ADGRA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7703857421875 2 512.769114 1023.52368 0.053689 2.753E-05 0.15596 7.9971E-05 0.20965 0.0001075 512.769159366001 31.089 0.28074 31.089 30.953 31.234 0 43 13 4 0 0 0 0.40136 1 16247 16247 21.537 0 1 32324000 + 59472 21145;29712 39739 40628 69248 69248 0.01285446343717922 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2839660644531 2 473.2844 944.554247 0.6187 0.00029282 -0.32517 -0.0001539 0.29352 0.00013892 473.28407266362035 83.139 0.30184 82.641 82.488 82.789 -0.49751 28 11 3 0 0 0 0.0090851 1 45486 45486 85.357 34.502 1 2311100 59473 5168 39740 40629 69249 69249 0.07975224728750163 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2853088378906 2 473.2844 944.554247 1.0895 0.00051564 0.7863 0.00037214 1.8758 0.00088779 473.28455526160616 82.509 0.2922 82.571 82.449 82.741 0.062004 20 10 3 0 0 0 0.016184 1 45685 45685 67.344 12.57 1 2845100 59474 5168 39740 40629 69250 69250 0.07975224728750163 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20221201_MKP_PDAC_01 4 473.2839965820312 2 473.2844 944.554247 NaN NaN NaN NaN NaN NaN NaN 92.947 1 86.772 86.272 87.272 -6.1757 0 0 0 0.014922 1 61490 61490 85.357 14.223 1 59475 5168 39740 40629 69251 69251 0.07975224728750163 SLSSLVVQL 9 Unmodified _SLSSLVVQL_ 0 0 0 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20221201_MKP_PDAC_01 4 473.2841186523438 2 473.2844 944.554247 NaN NaN NaN NaN NaN NaN NaN 93.219 1 87.044 86.544 87.544 -6.1757 0 0 0 0.014922 1 61689 61689 85.357 20.122 1 59476 5168 39740 40629 69252 69252 0.07975224728750163 SLSSVECLDY 10 Unmodified _SLSSVECLDY_ 0 0 0 ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF ENST00000426448.1_1_22:20804701-20805505:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.7794189453125 2 558.249897 1114.48524 0.63509 0.00035454 0.096248 5.373E-05 0.73133 0.00040827 558.2496183723647 99.654 0.1921 93.479 93.365 93.558 -6.1757 28 11 3 0 0 0 0.22941 1 66484 66484 9.3831 0 1 162690000 59477 13178 39741 40630 69253 69253 -0.067422273531065 SLSTNWFFLL 10 Unmodified _SLSTNWFFLL_ 0 0 0 REV__nc|ENSG00000261832|Q13286-7|CLN3 REV__nc|ENSG00000261832|Q13286-7|CLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3245849609375 2 614.324057 1226.63356 0.62103 0.00038151 -1.3127 -0.0008064 -0.69163 -0.00042489 614.3233166916076 85.01 0.34328 84.508 84.251 84.594 -0.5015 27 14 3 0 0 0 0.65282 1 46450 46450 8.1555 0.24537 1 696380 + 59478 23719 39742 40631 69254 69254 0.029308716829063997 SLSTYKIAEQD 11 Unmodified _SLSTYKIAEQD_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.31591796875 3 418.878592 1253.61395 0.65187 0.00027306 -0.075468 -3.1612E-05 0.5764 0.00024144 418.87862204903513 62.498 0.26789 62.011 61.851 62.119 -0.48764 28 12 3 0 0 0 0.306 1 33982 33982 0.45452 0 1 5334900 59479 10112 39743 40632 69255 69255 -0.0027154911851994257 SLSWPRHTL 9 Unmodified _SLSWPRHTL_ 0 0 0 REV__ENST00000563645.1_1_16:19514794-19516450:-|nuORF REV__ENST00000563645.1_1_16:19514794-19516450:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.2032165527344 3 366.201452 1095.58253 NaN NaN NaN NaN NaN NaN NaN 59.402 1 53.287 52.787 53.787 -6.1147 0 0 0 0.6306 1 38141 38141 7.609 0 1 + 59480 16978 39744 40633 69256 69256 0.03855967428717122 SLSWSAQPA 9 Unmodified _SLSWSAQPA_ 0 0 0 ENST00000474141.5_2_7:99746590-99751116:+|nuORF;ENST00000488338.2_1_7:99750348-99751116:+|nuORF ENST00000474141.5_2_7:99746590-99751116:+|nuORF ENST00000474141.5_2_7:99746590-99751116:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8723449707031 2 473.735074 945.455596 -0.28841 -0.00013663 -0.74823 -0.00035446 -1.0366 -0.00049109 473.7351116101998 25.756 0.29199 25.756 25.591 25.883 0 25 13 2 0 0 0 0.21052 1 13160 13160 6.7232 0.51738 1 1506100 59481 13932 39745 40634 69257 69257 -0.019313785162921704 SLSYPDWDI 9 Unmodified _SLSYPDWDI_ 0 0 0 ENST00000561208.5_1_15:37391669-37391768:-|nuORF ENST00000561208.5_1_15:37391669-37391768:-|nuORF ENST00000561208.5_1_15:37391669-37391768:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2550659179688 2 548.253297 1094.49204 NaN NaN NaN NaN NaN NaN NaN 58.927 1 58.927 58.427 59.427 0 0 0 0 0.6306 1 32819 32819 11.64 0.52583 1 59482 15317 39746 40635 69258 69258 -0.0514254641025218 SLTASMYEY 9 Unmodified _SLTASMYEY_ 0 0 0 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.734130859375 2 532.733883 1063.45321 0.31821 0.00016952 0.33046 0.00017605 0.64867 0.00034557 532.7343549946106 77.426 0.34438 77.426 77.186 77.531 0 54 23 3 0 0 0 0.41742 1 42980 42980 11.64 0 1 9731400 59483 5050 39747 40636 69259 69259 -0.07597595036259008 SLTASMYEY 9 Unmodified _SLTASMYEY_ 0 0 0 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.734130859375 2 532.733883 1063.45321 -0.92343 -0.00049195 1.8334 0.00097673 0.90999 0.00048478 532.7350136921734 77.905 0.39225 77.423 77.143 77.535 -0.4826 61 29 3 0 0 0 0.23158 1 42580 42580 20.454 7.4112 1 11256000 59484 5050 39747 40636 69260 69260 -0.07597595036259008 SLTASMYEY 9 Unmodified _SLTASMYEY_ 0 0 0 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7344970703125 2 532.733883 1063.45321 0.16099 8.5764E-05 2.8096 0.0014968 2.9706 0.0015825 532.7351609364005 85.482 0.37469 79.307 79.121 79.495 -6.1757 45 22 3 0 0 0 0.23158 1 56420 56420 20.454 4.6064 1 27108000 59485 5050 39747 40636 69261 69261 -0.07597595036259008 SLTASMYEY 9 Unmodified _SLTASMYEY_ 0 0 0 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 ENSG00000138411|ENST00000644978|HECW2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 532.733883 1063.45321 0.13136 6.9978E-05 2.027 0.0010798 2.1583 0.0011498 532.7345086785987 77.374 0.23723 77.424 77.321 77.558 0.05011 0.00026759 0.00077754 NaN 20.454 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1623400 59486 5050 39747 40636 -0.07597595036259008 SLTCAQFHPD 10 Unmodified _SLTCAQFHPD_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19;ENST00000539960.1_1_11:60665249-60666641:-|nuORF ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2655029296875 2 559.750398 1117.48624 0.24012 0.00013441 -0.10727 -6.0042E-05 0.13285 7.4366E-05 559.7505205775394 76.45 0.51231 75.97 75.764 76.276 -0.47945 183 30 7 0 0 0 0.23412 1 42011 42011 5.7319 4.0792 1 85035000 59487 2703 39748 40637 69262 69262 -0.06779968193563946 SLTCIMYMI 9 Unmodified _SLTCIMYMI_ 0 0 0 ENST00000586275.1_1_19:10563984-10570204:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A;nc|ENSG00000065989|P27815-5|PDE4A;ENST00000590407.1_1_19:10569976-10577573:+|nuORF ENST00000586275.1_1_19:10563984-10570204:+|nuORF ENST00000586275.1_1_19:10563984-10570204:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7564086914062 2 537.755249 1073.49595 1.0315 0.00055469 0.73492 0.00039521 1.7664 0.0009499 537.7556019702979 95.256 0.90777 89.08 88.573 89.481 -6.1757 100 51 2 0 0 0 0.28047 1 63072 63072 18.135 3.2967 1 46408000 59488 922 39749 40638 69263 69263 -0.03786239504029254 SLTEPLQTY 9 Unmodified _SLTEPLQTY_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2695922851562 2 526.268947 1050.52334 0.49838 0.00026228 1.1395 0.00059968 1.6379 0.00086196 526.2695090367546 28.719 0.33207 28.657 28.502 28.834 -0.062159 41 13 4 0 0 0 0.05447 1 14901 14901 43.858 1.7637 1 76699000 + 59489 23685 39750 40639 69264 69264 0.00010026623863268469 SLTETIEGV 9 Unmodified _SLTETIEGV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB;CON__Q3KUS7 nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.4878540039062 1 948.488418 947.481142 -0.15711 -0.00014902 1.7122 0.001624 1.5551 0.001475 948.4900462839121 53.271 0.20454 53.271 53.099 53.304 0 14 8 2 0 0 0 0.06187 1 29465 29465 42.095 13.608 1 1514300 59490 10710 39751 40640 69265 69265 0.005300512154917669 SLTFEKTPG 9 Unmodified _SLTFEKTPG_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2579956054688 2 490.258382 978.502212 0.38305 0.00018779 -1.1087 -0.00054353 -0.7256 -0.00035573 490.2578692343843 67.244 0.39664 67.244 67.04 67.437 0 27 16 2 0 0 0 0.39863 1 37550 37550 12.532 0.89125 1 2606700 + 59491 18769 39752 40641 69266 69266 0.012100613149982564 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7503662109375 2 457.750724 913.486896 -0.047274 -2.164E-05 0.18026 8.2514E-05 0.13298 6.0874E-05 457.75049631325646 33.288 0.21506 33.288 33.15 33.365 0 18 10 2 0 0 0 0.03568 1 17420 17420 52.268 12.311 1 3186400 59492 8116 39753 40642 69267 69267 0.02669194517818596 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MSMS AL20221201_MKP_PDAC_01 4 457.750732421875 2 457.750724 913.486896 NaN NaN NaN NaN NaN NaN NaN 38.104 1 33.735 33.235 34.235 -4.3689 0 0 0 0.028486 1 22437 22437 68.081 19.735 1 59493 8116 39753 40642 69268 69268 0.02669194517818596 SLTGHISTV 9 Unmodified _SLTGHISTV_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MSMS AL20221201_MKP_PDAC_01 4 457.7516479492188 2 457.750724 913.486896 NaN NaN NaN NaN NaN NaN NaN 38.307 1 33.938 33.438 34.438 -4.3689 0 0 0 0.056448 1 22579 22579 54.774 6.4277 1 59494 8116 39753 40642 69269 69269 0.02669194517818596 SLTGKPWALL 10 Unmodified _SLTGKPWALL_ 0 0 0 REV__ENST00000392004.7_1_2:238296248-238296335:-|nuORF REV__ENST00000392004.7_1_2:238296248-238296335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3209838867188 2 543.321317 1084.62808 0.31419 0.0001707 -1.4101 -0.00076611 -1.0959 -0.00059541 543.3208282046922 61.317 0.21775 61.317 61.193 61.411 0 14 9 2 0 0 0 0.50362 1 34191 34191 16.149 0.30192 1 620810 + 59495 26381 39754 40643 69270 69270 0.08915192891072365 SLTGRLDEV 9 Unmodified _SLTGRLDEV_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6 ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2674255371094 2 495.266739 988.518924 0.20733 0.00010268 1.5891 0.00078703 1.7964 0.00088971 495.2679014906102 39.66 0.19715 39.66 39.595 39.792 0 20 9 3 0 0 0 0.07087 1 21281 21281 39.95 1.9757 1 4264000 59496 7545 39755 40644 69271 69271 0.024205622009503713 SLTHDPFKY 9 Unmodified _SLTHDPFKY_ 0 0 0 REV__ENSG00000064835|ENST00000350375|POU1F1 REV__ENSG00000064835|ENST00000350375|POU1F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.274658203125 2 554.277106 1106.53966 NaN NaN NaN NaN NaN NaN NaN 68.486 1 68.486 67.986 68.986 0 0 0 0 0.82739 1 38175 38175 4.3292 1.44 1 + 59497 17363 39756 40645 69272 69272 -0.009348474193984657 SLTHILAL 8 Unmodified _SLTHILAL_ 0 0 0 ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1 ENST00000509552.5_1_6:31112443-31124902:-|nuORF ENST00000509552.5_1_6:31112443-31124902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2689819335938 2 434.268553 866.522553 0.1977 8.5855E-05 1.2363 0.00053688 1.434 0.00062274 434.2691680391331 76.187 0.71352 76.187 76.021 76.734 0 66 29 4 0 0 0 0.2655 1 42330 42330 59.795 0 1 6938600 59498 10299 39757 40646 69273 69273 0.08395276765452309 SLTHILAL 8 Unmodified _SLTHILAL_ 0 0 0 ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1 ENST00000509552.5_1_6:31112443-31124902:-|nuORF ENST00000509552.5_1_6:31112443-31124902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 867.530029296875 1 867.52983 866.522553 -0.6158 -0.00053423 0.68878 0.00059754 0.07298 6.3312E-05 867.5304563150672 76.635 0.45847 76.156 75.955 76.413 -0.47945 77 28 4 0 0 0 0.28922 1 41870 41870 56.541 0 1 23156000 59499 10299 39757 40646 69274 69274 0.08395276765452309 SLTHILAL 8 Unmodified _SLTHILAL_ 0 0 0 ENST00000509552.5_1_6:31112443-31124902:-|nuORF;nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1 ENST00000509552.5_1_6:31112443-31124902:-|nuORF ENST00000509552.5_1_6:31112443-31124902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2690124511719 2 434.268553 866.522553 -0.046757 -2.0305E-05 -0.031799 -1.3809E-05 -0.078556 -3.4114E-05 434.2684972580228 76.642 0.52776 76.163 75.909 76.437 -0.47945 100 31 4 0 0 0 0.2655 2 42057 41952;42057 59.795 10.126 1 47969000 59500 10299 39757 40646 69275;69276 69276 0.08395276765452309 SLTKEQPVI 9 Unmodified _SLTKEQPVI_ 0 0 0 ENSG00000165555|ENST00000380835|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 ENSG00000165555|ENST00000380835|NOXRED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7978515625 2 507.795132 1013.57571 0.88008 0.0004469 -0.13192 -6.6986E-05 0.74816 0.00037991 507.79506127616867 83.602 1.8176 77.426 76.747 78.564 -6.1757 281 99 5 0 0 0 0.48152 1 55729 55729 8.5933 0 1 286790000 59501 7360 39758 40647 69277 69277 0.06946609757483202 SLTKLNVDP 9 Unmodified _SLTKLNVDP_ 0 0 0 REV__ENSG00000178295|ENST00000381254|GEN1 REV__ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7805480957031 2 493.779482 985.544411 1.0192 0.00050326 0.67709 0.00033433 1.6963 0.00083759 493.77972985370957 19.465 0.27965 16.808 16.675 16.955 -2.6564 58 27 3 0 0 0 0.1685 1 10240 10240 26.268 2.2476 1 15249000 + 59502 23033 39759 40648 69278 69278 0.05106036723384477 SLTLETEDM 9 Unmodified _SLTLETEDM_ 0 0 0 ENSG00000166069|ENST00000319669|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A ENSG00000166069|ENST00000319669|TMCO5A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7859497070312 2 519.736622 1037.45869 -0.24289 -0.00012624 1.156 0.00060081 0.9131 0.00047457 519.7371533703464 18.291 0.40797 18.291 18.029 18.437 0 99 54 2 0 0 0 0.21473 1 8943 8943 4.3292 1.44 1 1442300 59503 7430 39760 40649 69279 69279 -0.058539162444503745 SLTLHHQPQQ 10 Unmodified _SLTLHHQPQQ_ 0 0 0 REV__ENSG00000254636|ENST00000528446|ARMS2 REV__ENSG00000254636|ENST00000528446|ARMS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.9010009765625 3 396.875516 1187.60472 -0.25645 -0.00010178 2.9146 0.0011568 2.6582 0.001055 396.87636897975085 35.77 0.19985 35.795 35.645 35.845 0.024967 11 9 2 0 0 0 0.22811 1 18928 18928 8.9762 1.9392 1 3173900 + 59504 24525 39761 40650 69280 69280 0.018421471064584694 SLTPKVGETI 10 Unmodified _SLTPKVGETI_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2637329101562 2 522.800414 1043.58628 0.644 0.00033668 -0.65338 -0.00034159 -0.0093739 -4.9007E-06 522.7999970192003 57.946 0.23994 57.946 57.772 58.012 0 15 9 2 0 0 0 0.22811 1 32158 32158 10.074 0 1 924520 + 59505 23807 39762 40651 69281 69281 0.06622592411918049 SLTPLSLPRVL 11 Unmodified _SLTPLSLPRVL_ 0 0 0 ENST00000546006.5_1_16:30770549-30771803:-|nuORF;ENST00000537986.1_1_16:30768799-30771803:-|nuORF;ENST00000544487.5_1_16:30770684-30771803:-|nuORF ENST00000546006.5_1_16:30770549-30771803:-|nuORF ENST00000546006.5_1_16:30770549-30771803:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.5403442382812 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 17.196 1 14.61 14.11 15.11 -2.5866 0 0 0 0.94165 1 8969 8969 1.3296 0 1 59506 14998 39763 40652 69282 69282 0.14403109016711824 SLTPLWHF 8 Unmodified _SLTPLWHF_ 0 0 0 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 REV__nc|ENSG00000166170|Q9UL15-2|BAG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7650146484375 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 79.289 1 78.803 78.303 79.303 -0.48596 0 0 0 0.97348 1 43429 43429 5.7604 0 1 + 59507 29761 39764 40653 69283 69283 0.018023926226987896 SLTQKELV 8 Unmodified _SLTQKELV_ 0 0 0 REV__ENSG00000184677|ENST00000375647|ZBTB40 REV__ENSG00000184677|ENST00000375647|ZBTB40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7700500488281 2 459.26875 916.522947 0.21469 9.8602E-05 -0.4786 -0.0002198 -0.2639 -0.0001212 459.2683710445032 70.741 0.37684 70.263 70.083 70.459 -0.47735 60 24 4 0 0 0 0.5284 1 38635 38635 32.117 3.0354 1 17825000 + 59508 23436 39765 40654 69284 69284 0.06134651694662807 SLTRNYRV 8 Unmodified _SLTRNYRV_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7838745117188 2 504.78289 1007.55123 1.0716 0.00054092 0.043866 2.2143E-05 1.1155 0.00056306 504.7829336477555 32.377 0.34211 28.521 28.352 28.694 -3.8562 37 19 3 0 0 0 0.72664 1 18529 18529 14.838 0.93222 1 23567000 + 59509 23990 39766 40655 69285 69285 0.047753943946077015 SLTSVVLTL 9 Unmodified _SLTSVVLTL_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.565185546875 1 932.566275 931.558998 1.0084 0.00094035 0.96511 0.00090003 1.9735 0.0018404 932.56728530188 99.495 0.12252 93.32 93.243 93.365 -6.1757 12 7 2 0 0 0 0.0082281 1 66263 66263 92.822 11.209 1 21305000 59510 2567 39767 40656 69286 69286 0.09048108871525073 SLTSVVLTL 9 Unmodified _SLTSVVLTL_ 0 0 0 nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 nc|ENSG00000108406|Q8IX18-4|DHX40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7876586914062 2 466.786776 931.558998 0.87936 0.00041047 0.76248 0.00035591 1.6418 0.00076639 466.7869999136514 99.488 0.13704 93.312 93.243 93.38 -6.1757 15 8 2 0 0 0 0.0090851 1 66289 66289 85.357 10.934 1 17853000 59511 2567 39767 40656 69287 69287 0.09048108871525073 SLTVDNLSLKL 11 Unmodified _SLTVDNLSLKL_ 0 0 0 REV__ENSG00000181544|ENST00000650831|FANCB REV__ENSG00000181544|ENST00000650831|FANCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.5708618164062 3 401.571211 1201.6918 -0.058508 -2.3495E-05 0.21957 8.8172E-05 0.16106 6.4677E-05 401.57124584486394 51.596 0.16725 51.163 51.061 51.228 -0.43367 16 8 3 0 0 0 0.53099 1 27828 27828 14.838 2.6632 1 2775700 + 59512 23210 39768 40657 69288 69288 0.09902508537516042 SLTWREFHYIQ 11 Unmodified _SLTWREFHYIQ_ 0 0 0 nc|ENSG00000105889|Q6NZ63|STEAP1B;ENSG00000105889|ENST00000678116|STEAP1B;ENST00000483679.1_1_7:22532171-22534501:-|nuORF;nc|ENSG00000105889|Q6NZ63-2|STEAP1B;ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1 nc|ENSG00000105889|Q6NZ63|STEAP1B nc|ENSG00000105889|Q6NZ63|STEAP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.9193420410156 3 493.917493 1478.73065 NaN NaN NaN NaN NaN NaN NaN 22.9 1 22.9 22.4 23.4 0 0 0 0 0.94165 1 11660 11660 0.45452 0 1 59513 2378 39769 40658 69289 69289 0.010432338919144968 SLTWRPAR 8 Unmodified _SLTWRPAR_ 0 0 0 REV__ENST00000272133.3_1_1:224804198-224804456:+|nuORF REV__ENST00000272133.3_1_1:224804198-224804456:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7804870605469 2 493.780151 985.545748 0.54946 0.00027131 0.12147 5.9977E-05 0.67092 0.00033129 493.78015937769385 29.995 0.32351 26.498 26.308 26.631 -3.497 35 15 3 0 0 0 0.29252 1 16959 16959 56.177 6.244 1 85293000 + 59514 25145 39770 40659 69290 69290 0.05239715602795059 SLTYIGGFPCV 11 Unmodified _SLTYIGGFPCV_ 0 0 0 ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF ENST00000430373.1_1_1:112289271-112289442:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7879028320312 2 578.788992 1155.56343 0.01545 8.9425E-06 -2.4108 -0.0013954 -2.3954 -0.0013864 578.7873779051495 76.613 0.2148 76.134 76.061 76.276 -0.47945 21 12 2 0 0 0 0.63851 1 41926 41926 9.3831 0 1 1352700 59515 13243 39771 40660 69291 69291 -0.008127499772172087 SLVAHTTLTF 10 Unmodified _SLVAHTTLTF_ 0 0 0 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 ENSG00000172459|ENST00000624596|OR5AR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3003540039062 2 545.300581 1088.58661 -0.1849 -0.00010083 -1.0126 -0.00055215 -1.1975 -0.00065298 545.3004061154502 56.196 0.39686 56.196 56.007 56.403 0 53 18 4 0 0 0 0.33553 1 31307 31307 25.399 0.40835 1 51374000 59516 8221 39772 40661 69292 69292 0.04586012131721873 SLVAILQSV 9 Unmodified _SLVAILQSV_ 0 0 0 ENSG00000165948|ENST00000555523|IFI27L1 ENSG00000165948|ENST00000555523|IFI27L1 ENSG00000165948|ENST00000555523|IFI27L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2874145507812 2 465.286943 928.559333 1.3278 0.00061781 -0.47928 -0.000223 0.84853 0.00039481 465.2867154774515 100.12 0.15913 93.946 93.855 94.014 -6.1757 14 9 2 0 0 0 0.23158 1 66910 66910 20.454 4.6064 1 15646000 59517 7412 39773 40662 69293 69293 0.09219528591370363 SLVATLQSL 9 Unmodified _SLVATLQSL_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;ENSG00000165949|ENST00000612813|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.27685546875 2 466.276575 930.538597 -0.32088 -0.00014962 0.65179 0.00030391 0.33091 0.00015429 466.2769769146066 78.46 0.36848 77.974 77.82 78.189 -0.48596 52 16 4 0 0 0 0.011968 1 43029 43029 74.929 6.8483 1 10325000 59518 16353 39774 40663 69294 69294 0.07054938211717854 SLVATLQSL 9 Unmodified _SLVATLQSL_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;ENSG00000165949|ENST00000612813|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 931.547607421875 1 931.545874 930.538597 -0.30327 -0.00028251 1.6357 0.0015237 1.3324 0.0012412 931.5469308674355 78.466 0.30135 77.98 77.864 78.165 -0.48596 20 13 2 0 0 0 0.41742 1 43060 43060 11.64 3.7301 1 2316100 59519 16353 39774 40663 69295 69295 0.07054938211717854 SLVATLQSL 9 Unmodified _SLVATLQSL_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27;nc|ENSG00000165949|P40305-4|IFI27;nc|ENSG00000165949|P40305-3|IFI27;ENSG00000165949|ENST00000612813|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2765197753906 2 466.276575 930.538597 1.0963 0.00051118 -1.6648 -0.00077628 -0.56855 -0.0002651 466.27575816681536 88.418 0.94218 82.242 81.889 82.831 -6.1757 107 52 3 0 0 0 0.0090948 2 58214 58214;58496 85.272 10.343 1 32426000 59520 16353 39774 40663 69296;69297 69296 0.07054938211717854 SLVDNSVPL 9 Unmodified _SLVDNSVPL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559864.1_1_17:78349619-78350798:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.261474609375 2 472.258382 942.502212 0.71147 0.000336 1.9499 0.00092086 2.6614 0.0012569 472.2595319373958 60.211 0.22857 60.211 60.094 60.322 0 15 9 2 0 0 0 0.39863 1 33589 33589 12.532 0 1 1128000 59521 8367 39775 40664 69298 69298 0.028660613149895653 SLVEFDTARL 10 Unmodified _SLVEFDTARL_ 0 0 0 REV__ENSG00000225614|ENST00000565624|ZNF469 REV__ENSG00000225614|ENST00000565624|ZNF469 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.208740234375 3 384.208273 1149.60299 NaN NaN NaN NaN NaN NaN NaN 45.473 1 45.149 44.649 45.649 -0.32425 0 0 0 0.8671 1 24295 24295 5.4027 0 1 + 59522 24387 39776 40665 69299 69299 0.034170932978668134 SLVEIILHV 9 Unmodified _SLVEIILHV_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;ENST00000534590.5_1_11:244044-244236:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.8169860839844 2 511.815867 1021.61718 2.4778 0.0012682 -1.1151 -0.00057073 1.3627 0.00069746 511.81520852936336 95.609 0.46075 95.613 95.46 95.921 0.0041504 32 17 3 0 0 0 0.023164 1 53107 53107 60.39 15.983 1 2917900 59523 9391 39777 40666 69300 69300 0.10723790516817644 SLVEIILHV 9 Unmodified _SLVEIILHV_ 0 0 0 ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527047.5_1_11:237024-247462:+|nuORF;ENST00000534590.5_1_11:244044-244236:+|nuORF ENSG00000185627|ENST00000532097|PSMD13 ENSG00000185627|ENST00000532097|PSMD13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8165893554688 2 511.815867 1021.61718 1.0893 0.00055752 -0.025324 -1.2961E-05 1.064 0.00054456 511.8156400456662 100.76 0.10789 94.581 94.528 94.635 -6.1757 12 7 2 0 0 0 0.038285 1 67465 67465 50.855 22.368 1 57614000 59524 9391 39777 40666 69301 69301 0.10723790516817644 SLVENIERL 9 Unmodified _SLVENIERL_ 0 0 0 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 ENSG00000234127|ENST00000454678|TRIM26 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.23583984375 2 536.803488 1071.59242 0.69309 0.00037206 -1.3135 -0.00070511 -0.62043 -0.00033305 536.8016985297296 60.405 0.28212 60.405 60.254 60.536 0 25 12 3 0 0 0 0.12281 1 33673 33673 29.841 8.3036 1 3834400 59525 10632 39778 40667 69302 69302 0.05949110643427957 SLVEQLTMV 9 Oxidation (M) _SLVEQLTM(Oxidation (M))V_ SLVEQLTM(1)V SLVEQLTM(46)V 0 0 1 ENSG00000008838|ENST00000394128|MED24;nc|ENSG00000008838|O75448-2|MED24 ENSG00000008838|ENST00000394128|MED24 ENSG00000008838|ENST00000394128|MED24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2734375 2 518.273175 1034.5318 0.39292 0.00020364 0.27442 0.00014222 0.66734 0.00034586 518.2734502551248 69.344 0.731 69.344 69.023 69.754 0 47 33 2 0 0 0 0.047788 1 38650 38650 45.7 26.443 1 2678200 59526 396 39779 40668 69303 69303 47 0.015912572688193904 SLVFPSIQV 9 Unmodified _SLVFPSIQV_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2879028320312 2 495.286943 988.559333 0.217 0.00010748 0.60403 0.00029917 0.82103 0.00040665 495.2870977796867 66.193 0.48461 65.71 65.5 65.984 -0.48323 49 25 3 0 0 0 0.1773 1 36173 36173 25.399 1.3787 1 20486000 + 59527 23319 39780 40669 69304 69304 0.06459528591381059 SLVGDEAL 8 Unmodified _SLVGDEAL_ 0 0 0 REV__ENST00000466093.1_1_3:52437126-52437549:-|nuORF REV__ENST00000466093.1_1_3:52437126-52437549:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2119445800781 2 402.210901 802.407249 NaN NaN NaN NaN NaN NaN NaN 24.328 1 21.501 21.001 22.001 -2.8273 0 0 0 0.95607 1 13239 13239 9.3474 0 1 + 59528 21834 39781 40670 69305 69305 -0.0018587215619163544 SLVGNDWSL 9 Unmodified _SLVGNDWSL_ 0 0 0 REV__ENST00000542456.5_1_9:130648430-130648565:-|nuORF REV__ENST00000542456.5_1_9:130648430-130648565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7479858398438 2 495.748182 989.481811 0.15584 7.7256E-05 0.93867 0.00046534 1.0945 0.0005426 495.747819205688 62.532 0.29504 62.532 62.432 62.727 0 21 14 2 0 0 0 0.49272 1 34914 34914 7.9102 0 1 879890 + 59529 28615 39782 40671 69306 69306 -0.013351093448136453 SLVGRKGR 8 Unmodified _SLVGRKGR_ 0 0 0 ENST00000375799.7_1_1:16060425-16060638:+|nuORF ENST00000375799.7_1_1:16060425-16060638:+|nuORF ENST00000375799.7_1_1:16060425-16060638:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7750854492188 2 436.774868 871.535184 0.5304 0.00023167 -0.20855 -9.1088E-05 0.32186 0.00014058 436.77466659905923 79.142 1.111 79.197 78.936 80.047 0.05497 112 43 5 0 0 0 0.80992 1 43863 43863 0.69038 0 1 252220000 59530 12484 39783 40672 69307 69307 0.09427732948370249 SLVGYSSTNI 10 Unmodified _SLVGYSSTNI_ 0 0 0 REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L REV__nc|ENSG00000121210|A2VDJ0-6|TMEM131L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2425537109375 2 520.766571 1039.51859 0.4948 0.00025768 -0.56055 -0.00029192 -0.065752 -3.4241E-05 521.2673999798415 61.265 0.2662 61.265 61.123 61.389 0 14 11 2 0 0 0 0.23862 1 34214 34214 3.9444 1.0552 1 427200 + 59531 19281 39784 40673 69308 69308 0.0004114248110909102 SLVHGAKG 8 Unmodified _SLVHGAKG_ 0 0 0 REV__ENST00000591295.5_1_17:42271068-42271269:-|nuORF REV__ENST00000591295.5_1_17:42271068-42271269:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.722412109375 2 384.72177 767.428987 NaN NaN NaN NaN NaN NaN NaN 42.701 1 38.016 37.516 38.516 -4.6846 0 0 0 0.96305 1 25828 25828 7.9102 0.62092 1 + 59532 29160 39785 40674 69309 69309 0.035969773830515805 SLVIMKSLEI 10 Unmodified _SLVIMKSLEI_ 0 0 0 nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 nc|ENSG00000140471|Q8NG48-3|LINS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.560546875 3 378.226387 1131.65733 0.029931 1.1321E-05 -1.2446 -0.00047073 -1.2146 -0.00045941 378.2258632021008 16.491 0.21327 16.496 16.323 16.537 0.0050564 20 12 2 0 0 0 0.69385 1 8225 8225 3.5871 0 1 925460 59533 5241 39786 40675 69310 69310 0.09676969125052892 SLVKDQSSCF 10 Unmodified _SLVKDQSSCF_ 0 0 0 ENST00000511024.5_1_5:137676955-137677195:+|nuORF ENST00000511024.5_1_5:137676955-137677195:+|nuORF ENST00000511024.5_1_5:137676955-137677195:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 557.2662963867188 2 557.265881 1112.51721 NaN NaN NaN NaN NaN NaN NaN 93.371 1 87.195 86.695 87.695 -6.1757 0 0 0 0.59691 1 61796 61796 21.537 2.28 1 59534 14600 39787 40676 69311 69311 -0.03454814879319201 SLVKRYAK 8 Unmodified _SLVKRYAK_ 0 0 0 REV__ENSG00000177692|ENST00000381947|DNAJC28 REV__ENSG00000177692|ENST00000381947|DNAJC28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.26806640625 2 482.800552 963.58655 0.69336 0.00033475 3.7437 0.0018074 4.437 0.0021422 482.80261019526296 52.297 0.1606 52.238 52.107 52.267 -0.058918 13 7 2 0 0 0 8.7369 1 28301 28301 18.135 2.2878 1 1309200 + 59535 22998 39788 40677 69312 69312 0.10330056922407493 SLVLILIVAPK 11 Unmodified _SLVLILIVAPK_ 0 0 0 ENSG00000163293|ENST00000295461|NIPAL1 ENSG00000163293|ENST00000295461|NIPAL1 ENSG00000163293|ENST00000295461|NIPAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1166.78857421875 1 1165.79186 1164.78458 -0.056077 -6.5374E-05 -3.148 -0.0036699 -3.2041 -0.0037353 1166.7887922478133 42.563 0.18567 42.256 42.197 42.383 -0.30682 11 8 2 0 0 0 0.73115 1 22617 22617 1.3295 0 1 19800000 59536 6973 39789 40678 69313 69313 0.20878058061543925 SLVMEYLAHP 10 Unmodified _SLVMEYLAHP_ 0 0 0 ENSG00000141378|ENST00000393038|PTRH2 ENSG00000141378|ENST00000393038|PTRH2 ENSG00000141378|ENST00000393038|PTRH2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.7930297851562 2 580.294442 1158.57433 0.82364 0.00047796 -4.1601 -0.0024141 -3.3365 -0.0019361 580.2939711092308 51.39 0.30447 45.741 45.622 45.927 -5.649 28 18 3 0 0 0 0.22149 1 32400 32400 20.454 0 1 27600000 59537 5320 39790 40679 69314 69314 0.0013865239704955457 SLVNQVPKI 9 Unmodified _SLVNQVPKI_ 0 0 0 ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3055114746094 2 499.305667 996.596781 0.30872 0.00015415 -1.2792 -0.00063869 -0.97043 -0.00048454 499.3051635465444 52.621 0.27505 52.187 52.023 52.298 -0.43367 19 13 2 0 0 0 0.1773 1 28455 28455 25.399 7.253 1 1874100 59538 8515 39791 40680 69315 69315 0.09834619856997051 SLVPHNYGL 9 Unmodified _SLVPHNYGL_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2955932617188 2 500.266542 998.51853 0.18946 9.4781E-05 -0.37142 -0.00018581 -0.18195 -9.1025E-05 500.26677273442067 49.076 0.26273 48.704 48.558 48.82 -0.37172 21 12 3 0 0 0 0.10661 1 26362 26362 30.637 12.502 1 3017100 59539 4865 39792 40681 69316 69316 0.01921187271761937 SLVQLLSDPF 10 Unmodified _SLVQLLSDPF_ 0 0 0 ENSG00000133812|ENST00000256190|SBF2;nc|ENSG00000100241|O95248|SBF1;ENSG00000100241|ENST00000380817|SBF1;nc|ENSG00000100241|O95248-4|SBF1 ENSG00000133812|ENST00000256190|SBF2;nc|ENSG00000100241|O95248|SBF1 nc|ENSG00000100241|O95248|SBF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7267456054688 2 559.808239 1117.60193 0.57319 0.00032088 -3.9955 -0.0022367 -3.4223 -0.0019158 560.3056355426311 59.498 0.15373 59.498 59.379 59.532 0 9 6 2 0 0 0 0.18632 1 33147 33147 32.305 23.712 1 714200 59540 1776;4534 39793 40682 69317 69317 0.04782878928926948 SLVRGGSG 8 Unmodified _SLVRGGSG_ 0 0 0 REV__ENST00000393892.7_1_17:40127921-40128083:+|nuORF REV__ENST00000393892.7_1_17:40127921-40128083:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.7052001953125 2 366.703577 731.392602 NaN NaN NaN NaN NaN NaN NaN 16.159 1 13.602 13.102 14.102 -2.557 0 0 0 0.97444 1 8351 8351 4.3292 0 1 + 59541 26431 39794 40683 69318 69318 0.016161004863420203 SLVSGCLVYY 10 Unmodified _SLVSGCLVYY_ 0 0 0 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 REV__nc|ENSG00000139697|A3KN83-3|SBNO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2451782226562 2 552.275718 1102.53688 NaN NaN NaN NaN NaN NaN NaN 55.068 1 54.59 54.09 55.09 -0.47798 0 0 0 0.92825 1 29863 29863 6.7232 0 1 + 59542 20428 39795 40684 69319 69319 -0.010284388685477097 SLVSPISLL 9 Unmodified _SLVSPISLL_ 0 0 0 REV__ENST00000461564.6_1_1:155023817-155033989:+|nuORF REV__ENST00000461564.6_1_1:155023817-155033989:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7897338867188 2 464.789318 927.564084 1.318 0.00061257 -0.5963 -0.00027715 0.72166 0.00033542 464.78915623543094 97.212 1.1369 91.036 90.305 91.441 -6.1757 147 65 3 0 0 0 0.038285 1 64120 64120 50.855 0 1 36056000 + 59543 27320 39796 40685 69320 69320 0.09740412734140591 SLWAENKHI 9 Unmodified _SLWAENKHI_ 0 0 0 REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L REV__nc|ENSG00000137942|Q5T0N5-3|FNBP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5291137695312 3 366.529458 1096.56654 -0.34048 -0.0001248 0.23118 8.4733E-05 -0.1093 -4.0063E-05 366.5298550294573 29.223 0.1464 29.223 29.161 29.308 0 11 6 2 0 0 0 0.58865 1 15133 15133 1.0715 0 1 609720 + 59544 20283 39797 40686 69321 69321 0.022122611917893664 SLWCRPCFREW 11 Unmodified _SLWCRPCFREW_ 0 0 0 ENST00000397333.3_1_12:132626500-132626904:-|nuORF ENST00000397333.3_1_12:132626500-132626904:-|nuORF ENST00000397333.3_1_12:132626500-132626904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.8406372070312 2 741.842099 1481.66964 0.59201 0.00043918 -2.5832 -0.0019163 -1.9912 -0.0014772 741.8407583665116 54.201 0.19749 54.201 54.132 54.33 0 21 8 3 0 0 0 0.71618 1 30128 30128 2.7352 1.0826 1 2057300 59545 12820 39798 40687 69322 69322 -0.05192317683554393 SLWEWEEQSFY 11 Unmodified _SLWEWEEQSFY_ 0 0 0 REV__ENSG00000198046|ENST00000504904|ZNF667 REV__ENSG00000198046|ENST00000504904|ZNF667 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 752.327392578125 2 752.324982 1502.63541 NaN NaN NaN NaN NaN NaN NaN 71.097 1 71.097 70.597 71.597 0 0 0 0 0.94184 1 39607 39607 1.1933 0.735 1 + 59546 23983 39799 40688 69323 69323 -0.0958016408981166 SLWGWRLK 8 Unmodified _SLWGWRLK_ 0 0 0 REV__ENST00000403714.7_1_2:25377570-25377759:+|nuORF REV__ENST00000403714.7_1_2:25377570-25377759:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.3015747070312 2 523.300719 1044.58688 NaN NaN NaN NaN NaN NaN NaN 71.172 1 71.172 70.672 71.672 0 0 0 0 0.97444 1 39647 39647 5.2307 0.47466 1 + 59547 26631 39800 40689 69324 69324 0.06637476642254114 SLWHYVLW 8 Unmodified _SLWHYVLW_ 0 0 0 REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF REV__ENST00000361781.6_1_10:52067826-52087058:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.76025390625 2 552.287277 1102.56 0.42025 0.0002321 -3.5532 -0.0019624 -3.133 -0.0017303 552.2852533997028 79.74 0.11147 79.74 79.686 79.797 0 6 4 2 0 0 0 8.7369 1 44303 44303 5.7604 0 1 213770 + 59548 25939 39801 40690 69325 69325 0.012823680310702912 SLWKDVTF 8 Unmodified _SLWKDVTF_ 0 0 0 nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9;nc|ENSG00000117859|Q96SU4-5|OSBPL9;nc|ENSG00000117859|Q96SU4-4|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 nc|ENSG00000117859|Q96SU4-3|OSBPL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2649230957031 2 498.263468 994.512382 0.89418 0.00044554 0.29851 0.00014874 1.1927 0.00059428 498.2634977122598 75.582 0.83088 69.407 69.063 69.894 -6.1757 76 44 2 0 0 0 0.61462 1 49712 49712 24.674 2.9272 1 17714000 59549 3339 39802 40691 69326 69326 0.014906690402199274 SLWKEHVD 8 Unmodified _SLWKEHVD_ 0 0 0 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2548522949219 2 507.256174 1012.49779 NaN NaN NaN NaN NaN NaN NaN 91.447 1 91.447 90.947 91.947 0 0 0 0 0.97444 1 50574 50574 5.2307 0.47466 1 59550 10250 39803 40692 69327 69327 -0.007954031079179913 SLWKENYF 8 Unmodified _SLWKENYF_ 0 0 0 REV__ENST00000483698.5_1_2:122513280-122515022:+|nuORF REV__ENST00000483698.5_1_2:122513280-122515022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8464660644531 3 362.846675 1085.5182 -0.090891 -3.298E-05 -0.62117 -0.00022539 -0.71206 -0.00025837 362.8463510614588 51.313 0.17078 50.9 50.778 50.949 -0.41351 14 8 2 0 0 0 0.77907 1 27657 27657 7.2892 1.9923 1 2727400 + 59551 27746 39804 40693 69328 69328 -0.021142324481161268 SLWNNCNF 8 Unmodified _SLWNNCNF_ 0 0 0 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 REV__nc|ENSG00000167210|Q8IVV2|LOXHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2127990722656 2 499.213452 996.412351 0.2977 0.00014862 0.93735 0.00046794 1.2351 0.00061655 499.2137222164778 75.904 0.45744 75.427 75.255 75.712 -0.47714 46 19 3 0 0 0 0.80624 1 41632 41632 2.8892 0 1 2951300 + 59552 22194 39805 40694 69329 69329 -0.08599891565222606 SLWPHMLHR 9 Unmodified _SLWPHMLHR_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|146|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|146|3|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2097473144531 3 392.874682 1175.60222 1.0007 0.00039317 -0.75966 -0.00029845 0.24108 9.4714E-05 393.20869045951497 18.608 0.30336 15.986 15.813 16.116 -2.6215 82 32 4 0 0 0 0.55144 1 9771 9771 2.4985 0.59211 1 5321200 + 59553 29363 39806 40695 69330 69330 0.021440201677933146 SLWPMCCPL 9 Unmodified _SLWPMCCPL_ 0 0 0 ENST00000322224.8_1_4:679628-680066:-|nuORF ENST00000322224.8_1_4:679628-680066:-|nuORF ENST00000322224.8_1_4:679628-680066:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7777099609375 2 525.234484 1048.45442 0.13982 7.3436E-05 -3.2724 -0.0017188 -3.1326 -0.0016453 525.7338310657263 76.23 0.19701 75.75 75.661 75.858 -0.47945 12 7 2 0 0 0 0.20528 1 41720 41720 8.5933 0.68312 1 270240 59554 11785 39807 40696 69331 69331 -0.06787375472731583 SLWREVVTF 9 Unmodified _SLWREVVTF_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8095703125 2 568.808574 1135.60259 0.40993 0.00023317 0.98851 0.00056227 1.3984 0.00079545 568.8091853679035 74.13 0.27187 74.174 74.028 74.3 0.043976 28 11 3 0 0 0 0.01958 1 40839 40839 63.961 36.332 1 5294100 59555 3920 39808 40697 69332 69332 0.04021718368653637 SLWREVVTF 9 Unmodified _SLWREVVTF_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250;nc|ENSG00000126001|Q9BV73-2|CEP250;ENST00000465987.1_1_20:34053609-34055133:+|nuORF ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8075561523438 2 568.808574 1135.60259 1.3357 0.00075973 0.84385 0.00047999 2.1795 0.0012397 568.808987952657 96.877 0.28893 90.701 90.572 90.861 -6.1757 25 16 2 0 0 0 0.012228 1 64238 64238 74.2 34.25 1 21158000 59556 3920 39808 40697 69333 69333 0.04021718368653637 SLWRRWPWLCL 11 Unmodified _SLWRRWPWLCL_ 0 0 0 ENST00000520105.5_1_8:142441191-142441554:+|nuORF ENST00000520105.5_1_8:142441191-142441554:+|nuORF ENST00000520105.5_1_8:142441191-142441554:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 758.40625 2 758.405724 1514.79689 0.67223 0.00050982 0.44023 0.00033387 1.1125 0.00084369 758.4060786028183 78.132 0.88012 71.956 71.428 72.308 -6.1757 135 50 3 0 0 0 0.39949 3 51209 50952;51209;51337 21.537 6.2885 1 80042000 59557 14721 39809 40698 69334;69335;69336 69335 0.06008771252959377 SLWTPRLTI 9 Unmodified _SLWTPRLTI_ 0 0 0 nc|ENSG00000186919|Q401N2-2|ZACN;ENSG00000186919|ENST00000334586|ZACN nc|ENSG00000186919|Q401N2-2|ZACN nc|ENSG00000186919|Q401N2-2|ZACN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7940673828125 2 543.818941 1085.62333 0.369 0.00020067 1.3159 0.0007156 1.6849 0.00091627 543.8197990519518 62.111 0.19207 61.624 61.489 61.681 -0.48764 16 8 2 0 0 0 0.19613 1 33802 33802 12.532 0 1 1095000 59558 9522 39810 40699 69337 69337 0.08394308748324875 SLWWAFAT 8 Unmodified _SLWWAFAT_ 0 0 0 ENSG00000135917|ENST00000644224|SLC19A3 ENSG00000135917|ENST00000644224|SLC19A3 ENSG00000135917|ENST00000644224|SLC19A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2442016601562 2 491.245078 980.475603 NaN NaN NaN NaN NaN NaN NaN 50.69 1 50.636 50.136 51.136 -0.053871 0 0 0 0.93587 1 27416 27416 13.508 1.8676 1 59559 4757 39811 40700 69338 69338 -0.015415827856827491 SLWWRCFL 8 Unmodified _SLWWRCFL_ 0 0 0 ENST00000379095.4_1_15:90818360-90818948:+|nuORF ENST00000379095.4_1_15:90818360-90818948:+|nuORF ENST00000379095.4_1_15:90818360-90818948:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.78125 2 555.781305 1109.54806 NaN NaN NaN NaN NaN NaN NaN 95.437 1 95.069 94.569 95.569 -0.36814 0 0 0 0.97444 1 52128 52128 0.79363 0 1 59560 12560 39812 40701 69339 69339 -0.0023357198376743327 SLYANIDIL 9 Unmodified _SLYANIDIL_ 0 0 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF;ENST00000510102.5_1_6:43481178-43483845:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 ENSG00000137207|ENST00000372422|YIPF3 MSMS AL20221201_MKP_PDAC_01 4 511.285400390625 2 511.281857 1020.54916 NaN NaN NaN NaN NaN NaN NaN 86.613 1 80.438 79.938 80.938 -6.1757 0 0 0 0.20153 1 57099 57099 30.637 2.1497 1 59561 4912 39813 40702 69340 69340 0.03970920866152028 SLYDECSPP 9 Unmodified _SLYDECSPP_ 0 0 0 ENST00000601544.5_1_19:17830311-17836711:+|nuORF ENST00000601544.5_1_19:17830311-17836711:+|nuORF ENST00000601544.5_1_19:17830311-17836711:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.26171875 2 505.710408 1009.40626 1.1112 0.00056196 -0.51936 -0.00026264 0.59187 0.00029931 505.71008284958685 55.242 0.36422 49.321 49.143 49.507 -5.9211 36 22 2 0 0 0 0.19613 1 35242 35242 7.9102 5.3327 1 12506000 59562 15808 39814 40703 69341 69341 -0.09806454587396729 SLYDRMQRY 9 Unmodified _SLYDRMQRY_ 0 0 0 REV__nc|ENSG00000136152|Q96JB2-2|COG3 REV__nc|ENSG00000136152|Q96JB2-2|COG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2992553710938 2 616.298047 1230.58154 0.38972 0.00024018 0.94978 0.00058535 1.3395 0.00082553 616.2987441204222 77.409 0.77074 77.409 77.045 77.816 0 195 49 5 0 0 0 0.5029 1 43186 43186 7.2892 0 1 138110000 + 59563 20141 39815 40704 69342 69342 -0.024526150024939852 SLYDRPASY 9 Unmodified _SLYDRPASY_ 0 0 0 ENST00000509092.5_1_4:55124935-55146696:+|nuORF;ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509490.5_1_4:55145100-55147845:+|nuORF;ENST00000507536.1_1_4:55143544-55147845:+|nuORF ENST00000509092.5_1_4:55124935-55146696:+|nuORF ENST00000509092.5_1_4:55124935-55146696:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8417358398438 3 357.841701 1070.50327 -0.35626 -0.00012748 -0.060964 -2.1816E-05 -0.41722 -0.0001493 357.8416438529202 24.244 0.24922 24.244 24.099 24.348 0 45 16 3 0 0 0 0.45045 1 12359 12359 6.6304 0 1 10552000 59564 4647 39816 40705 69343 69343 -0.029157243160852886 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7579345703125 2 549.758746 1097.50294 0.083762 4.6049E-05 -1.0251 -0.00056354 -0.94131 -0.00051749 549.7587345360687 56.382 0.47876 56.382 56.227 56.705 0 50 21 3 0 0 0 0.0095811 2 31313 31313;31423 81.613 61.159 1 16128000 59565 9221 39817 40706 69344;69345 69344 -0.041911440359626795 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1099.934814453125 1 1098.51022 1097.50294 0.038888 4.2719E-05 -0.10991 -0.00012074 -0.07102 -7.8017E-05 1098.5097757796634 57.003 0.23602 56.518 56.39 56.626 -0.48554 17 10 2 0 0 0 0.34999 1 31017 31017 14.838 10.894 1 3544500 59566 9221 39817 40706 69346 69346 -0.041911440359626795 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.759033203125 2 549.758746 1097.50294 0.87134 0.00047903 -0.76125 -0.0004185 0.11009 6.0524E-05 549.7585639306018 64.922 0.55016 58.746 58.47 59.02 -6.1757 67 30 3 0 0 0 0.013323 2 42091 42091;42225 71.134 50.68 1 50463000 59567 9221 39817 40706 69347;69348 69347 -0.041911440359626795 SLYDYNPNL 9 Unmodified _SLYDYNPNL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1098.51022 1097.50294 -0.71486 -0.00078529 0.45469 0.00049948 -0.26018 -0.00028581 1098.5105848358812 56.372 0.33868 56.372 56.204 56.543 0 -0.072742 0.00014673 NaN 14.838 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 19017000 59568 9221 39817 40706 -0.041911440359626795 SLYECRSSW 9 Unmodified _SLYECRSSW_ 0 0 0 REV__nc|ENSG00000284922|Q8WZ04-2|TOMT REV__nc|ENSG00000284922|Q8WZ04-2|TOMT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7722778320312 2 565.750398 1129.48624 3.6399 0.0020593 -0.76332 -0.00043185 2.8765 0.0016274 565.7485075119578 97.859 0.13743 97.84 97.762 97.9 -0.018188 6 4 2 0 0 0 0.20727 1 54358 54358 7.9102 5.3327 1 261100 + 59569 30015 39818 40707 69349 69349 -0.07331968193557259 SLYEDDITF 9 Unmodified _SLYEDDITF_ 0 0 0 ENST00000529462.5_1_8:145637924-145638077:-|nuORF;nc|ENSG00000147804|Q6P5W5-2|SLC39A4;ENSG00000147804|ENST00000301305|SLC39A4 ENST00000529462.5_1_8:145637924-145638077:-|nuORF ENST00000529462.5_1_8:145637924-145638077:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7501831054688 2 551.750587 1101.48662 0.50421 0.0002782 -0.41149 -0.00022704 0.092724 5.116E-05 551.7503070129807 69.24 0.46663 69.24 68.911 69.377 0 44 20 3 0 0 0 0.54213 1 38640 38640 7.9102 0 1 4435500 59570 5883 39819 40708 69350 69350 -0.060062699927357244 SLYEHPSI 8 Unmodified _SLYEHPSI_ 0 0 0 ENSG00000184445|ENST00000333479|KNTC1;nc|ENSG00000184445|P50748-2|KNTC1;ENST00000436959.7_1_12:123087118-123101977:+|nuORF ENSG00000184445|ENST00000333479|KNTC1 ENSG00000184445|ENST00000333479|KNTC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2380981445312 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 65.2 1 65.2 64.7 65.7 0 0 0 0 0.97348 1 36371 36371 5.7604 0 1 59571 9258 39820 40709 69351 69351 -0.014104943735219422 SLYEMVSRV 9 Oxidation (M) _SLYEM(Oxidation (M))VSRV_ SLYEM(1)VSRV SLYEM(42)VSRV 0 0 1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 550.277099609375 2 550.276249 1098.53795 NaN NaN NaN NaN NaN NaN NaN 47.786 1 42.552 42.052 43.052 -5.2339 0 0 0 0.10661 1 29698 29698 41.956 16.556 1 59572 5985 39821 40710 69352 69352 1069 -0.007382244996506415 SLYERSWD 8 Unmodified _SLYERSWD_ 0 0 0 REV__ENST00000344413.5_1_4:72897830-73003834:+|nuORF REV__ENST00000344413.5_1_4:72897830-73003834:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.2454833984375 2 528.243264 1054.47197 NaN NaN NaN NaN NaN NaN NaN 93.433 1 87.258 86.758 87.758 -6.1757 0 0 0 0.88449 1 61840 61840 19.257 1.122 1 + 59573 25740 39822 40711 69353 69353 -0.053082973501886954 SLYGEIELQKV 11 Unmodified _SLYGEIELQKV_ 0 0 0 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.8513793945312 2 639.850635 1277.68672 0.44354 0.0002838 0.84934 0.00054345 1.2929 0.00082725 639.8507360514843 60.293 0.2077 60.293 60.199 60.407 0 16 8 3 0 0 0 0.51324 1 33657 33657 15.739 8.4494 1 968420 59574 5646 39823 40712 69354 69354 0.05898204674895169 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.5035400390625 1 924.503674 923.496398 0.43552 0.00040264 -0.44865 -0.00041478 -0.013133 -1.2141E-05 924.503144084493 67.426 0.37257 67.426 67.248 67.621 0 38 16 3 0 0 0 0.026094 2 37647 37549;37647 57.471 18.121 1 6024600 59575 6408 39824 40713 69355;69356 69356 0.03158962803343002 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.506103515625 1 924.503674 923.496398 0.98475 0.0009104 -0.2139 -0.00019775 0.77085 0.00071265 924.5033059886299 74.509 0.58591 68.334 68.02 68.606 -6.1757 61 30 3 0 0 0 0.012148 1 48815 48815 74.423 16.951 1 34123000 59576 6408 39824 40713 69357 69357 0.03158962803343002 SLYGGTITI 9 Unmodified _SLYGGTITI_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 924.503674 923.496398 0.51043 0.00047189 -0.71206 -0.00065831 -0.20164 -0.00018641 924.5029541447999 67.927 0.36012 67.444 67.255 67.615 -0.48219 0.0089994 -0.00010354 NaN 57.471 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10882000 59577 6408 39824 40713 0.03158962803343002 SLYGGYDQLF 10 Unmodified _SLYGGYDQLF_ 0 0 0 REV__ENST00000480367.1_1_7:154677243-154681360:+|nuORF REV__ENST00000480367.1_1_7:154677243-154681360:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1861572265625 3 388.185356 1161.53424 -0.29646 -0.00011508 1.134 0.00044021 0.83757 0.00032513 388.18576545961196 51.338 0.75045 51.284 51.047 51.797 -0.053871 117 37 5 0 0 0 0.6606 1 28047 28047 3.8763 1.7903 1 280240000 + 59578 27673 39825 40714 69358 69358 -0.040065710018552636 SLYGLGASRPR 11 Unmodified _SLYGLGASRPR_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.87353515625 3 392.887645 1175.64111 -0.2816 -0.00011064 0.89399 0.00035124 0.61239 0.0002406 392.88800563845797 31.081 0.20722 31.111 30.992 31.199 0.030106 10 8 2 0 0 0 0.29136 1 16241 16241 11.065 4.4349 1 1099300 + 59579 199 39826 40715 69359 69359 0.06031024003186758 SLYHHLHI 8 Unmodified _SLYHHLHI_ 0 0 0 CUX1-BRAF|1|fusion;CUX1-BRAF|2|fusion;CUX1-BRAF|4|fusion;CUX1-BRAF|5|fusion;CUX1-BRAF|3|fusion;ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF CUX1-BRAF|1|fusion;ENSG00000157764|ENST00000646891|BRAF CUX1-BRAF|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2752990722656 2 510.274701 1018.53485 NaN NaN NaN NaN NaN NaN NaN 95.602 1 95.233 94.733 95.733 -0.36814 0 0 0 0.97444 1 52216 52216 2.5775 0 1 59580 224;6537 39827 40716 69360 69360 0.02632313228525618 SLYHIYVAL 9 Unmodified _SLYHIYVAL_ 0 0 0 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 ENSG00000100292|ENST00000216117|HMOX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3450927734375 2 539.800217 1077.58588 0.55445 0.00029929 0.0084318 4.5515E-06 0.56289 0.00030385 539.8004459190975 71.808 0.24731 71.847 71.727 71.974 0.039024 23 11 3 0 0 0 0.18882 1 39506 39506 15.847 4.2069 1 1761600 59581 1785 39828 40717 69361 69361 0.05019217482708882 SLYHRWNF 8 Unmodified _SLYHRWNF_ 0 0 0 REV__ENST00000370119.8_1_1:101203842-101203926:+|nuORF REV__ENST00000370119.8_1_1:101203842-101203926:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8536987304688 3 374.854164 1121.54066 -0.52143 -0.00019546 -0.50315 -0.00018861 -1.0246 -0.00038406 374.8541141146189 19.263 0.13582 19.286 19.184 19.32 0.023106 10 7 2 0 0 0 0.80676 1 9714 9714 1.6526 0 1 313670 + 59582 26051 39829 40718 69362 69362 -0.01524588259826487 SLYHWTQHR 9 Unmodified _SLYHWTQHR_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.30126953125 2 614.304521 1226.59449 0.55909 0.00034345 -0.23592 -0.00014493 0.32317 0.00019852 614.3042243602645 61.131 0.49387 61.088 60.745 61.239 -0.04351 69 24 4 0 0 0 0.50598 1 33271 33271 10.824 4.1008 1 30097000 + 59583 17402 39830 40719 69363 69363 -0.00974415828113706 SLYKEEPVS 9 Unmodified _SLYKEEPVS_ 0 0 0 ENST00000513426.1_1_5:53156036-53156228:+|nuORF ENST00000513426.1_1_5:53156036-53156228:+|nuORF ENST00000513426.1_1_5:53156036-53156228:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2696533203125 2 526.268947 1050.52334 -0.43019 -0.00022639 0.59992 0.00031572 0.16973 8.9324E-05 526.2691380981271 30.295 0.20175 30.295 30.181 30.383 0 15 9 2 0 0 0 0.2001 1 15739 15739 23.148 0 1 1800100 59584 14639 39831 40720 69364 69364 0.00010026623863268469 SLYKHLHV 8 Unmodified _SLYKHLHV_ 0 0 0 ENST00000494557.1_1_3:12632295-12633310:-|nuORF;ENST00000460610.1_1_3:12632295-12641253:-|nuORF;ENST00000465826.5_1_3:12628841-12633220:-|nuORF;ENSG00000132155|ENST00000251849|RAF1;nc|ENSG00000132155|P04049-2|RAF1 ENST00000494557.1_1_3:12632295-12633310:-|nuORF ENST00000494557.1_1_3:12632295-12633310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7863159179688 2 498.784902 995.55525 0.3642 0.00018166 1.0118 0.00050469 1.376 0.00068634 498.78538148504543 79.351 0.52044 79.406 79.056 79.577 0.05497 30 19 2 0 0 0 0.80447 1 43839 43839 3.9444 1.3669 1 3385600 59585 4373 39832 40721 69365 69365 0.05729483888319464 SLYLHMKEL 9 Unmodified _SLYLHMKEL_ 0 0 0 REV__ENSG00000120318|ENST00000239440|ARAP3 REV__ENSG00000120318|ENST00000239440|ARAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5398864746094 3 378.538965 1132.59507 1.2237 0.0004632 1.7244 0.00065276 2.9481 0.001116 378.53969976977174 45.67 0.4271 40.715 40.524 40.951 -4.9549 59 28 3 0 0 0 0.30562 1 28034 28034 16.149 7.1729 1 20733000 + 59586 19237 39833 40722 69366 69366 0.03407242776734165 SLYPWLVA 8 Unmodified _SLYPWLVA_ 0 0 0 REV__ENST00000523415.5_1_8:566458-566569:-|nuORF REV__ENST00000523415.5_1_8:566458-566569:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7638549804688 2 474.763104 947.511654 -0.10472 -4.9719E-05 1.5562 0.00073882 1.4515 0.0006891 474.76380519197164 30.163 0.27505 30.194 30.047 30.323 0.030106 19 11 2 0 0 0 0.80676 1 15764 15764 2.5775 0 1 890970 + 59587 28313 39834 40723 69367 69367 0.03579874391186877 SLYQSKYE 8 Unmodified _SLYQSKYE_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7252197265625 2 509.248015 1016.48148 0.62479 0.00031817 1.1328 0.00057685 1.7575 0.00089503 509.2479670984751 53.44 0.29931 53.44 53.327 53.627 0 22 13 2 0 0 0 8.7369 1 29658 29658 5.2307 0 1 4757500 + 59588 7667 39835 40724 69368 69368 -0.0261052906465693 SLYRDVLI 8 Unmodified _SLYRDVLI_ 0 0 0 REV__nc|ENSG00000136699|Q9NXE4-3|SMPD4 REV__nc|ENSG00000136699|Q9NXE4-3|SMPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7847900390625 2 489.784567 977.554582 0.68229 0.00033418 -0.48622 -0.00023814 0.19607 9.6033E-05 489.7844117721639 64.695 0.40945 64.21 63.993 64.403 -0.48512 30 18 2 0 0 0 0.63229 1 35265 35265 23.148 5.0134 1 883560 + 59589 20173 39836 40725 69369 69369 0.06490644448626881 SLYREILFL 9 Unmodified _SLYREILFL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3351440429688 2 577.334424 1152.6543 0.56591 0.00032672 0.59174 0.00034163 1.1576 0.00066835 577.8362049682983 86.935 0.24479 86.432 86.296 86.541 -0.50318 17 9 2 0 0 0 0.2324 1 47543 47543 20.415 3.3016 1 814950 59590 4903;8426 39837 40726 69370 69370 0.08407462062564264 SLYREILFL 9 Unmodified _SLYREILFL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3350830078125 2 577.334424 1152.6543 0.68648 0.00039633 -0.65472 -0.00037799 0.031765 1.8339E-05 577.3345682516432 99.597 0.18449 93.421 93.306 93.49 -6.1757 20 11 3 0 0 0 0.012228 1 66360 66360 74.2 16.478 1 61148000 59591 4903;8426 39837 40726 69371 69371 0.08407462062564264 SLYREILFL 9 Unmodified _SLYREILFL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C;nc|ENSG00000174485|Q7Z401|DENND4A nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.334424 1152.6543 0.56591 0.00032672 0.59174 0.00034163 1.1576 0.00066835 577.8362049682983 86.935 0.24479 86.432 86.296 86.541 -0.50318 0 0 NaN 20.415 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 814950 59592 4903;8426 39837 40726 0.08407462062564264 SLYRPRRC 8 Unmodified _SLYRPRRC_ 0 0 0 REV__ENSG00000179826|ENST00000621697|MRGPRX3 REV__ENSG00000179826|ENST00000621697|MRGPRX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8585815429688 3 350.859032 1049.55527 NaN NaN NaN NaN NaN NaN NaN 17.205 1 17.205 16.705 17.705 0 0 0 0 0.97444 1 8457 8457 0.45834 0 1 + 59593 23121 39838 40727 69372 69372 0.032471606166836864 SLYRRNSYY 9 Unmodified _SLYRRNSYY_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8709716796875 3 407.871883 1220.59382 -0.2492 -0.00010164 1.1861 0.00048376 0.93685 0.00038212 407.87224096211787 33.113 0.21301 33.143 33.019 33.232 0.029747 27 8 4 0 0 0 0.39863 1 17402 17402 8.1555 1.9637 1 6732000 + 59594 17428 39839 40728 69373 69373 -0.007652552678109714 SLYRRNSYY 9 Unmodified _SLYRRNSYY_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 407.871883 1220.59382 -0.23395 -9.5424E-05 0.75505 0.00030796 0.5211 0.00021254 407.8721555187557 33.267 0.30946 33.108 32.913 33.223 -0.15918 0.0084649 -0.00039586 NaN 8.1555 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2801500 + 59595 17428 39839 40728 -0.007652552678109714 SLYRRNSYY 9 Unmodified _SLYRRNSYY_ 0 0 0 REV__ENSG00000067900|ENST00000399799|ROCK1 REV__ENSG00000067900|ENST00000399799|ROCK1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 407.871883 1220.59382 1.3484 0.00054998 1.9964 0.00081426 3.3448 0.0013642 407.8731994279742 37.331 0.22955 33.048 32.908 33.137 -4.2835 -0.051836 0.001123 NaN 8.1555 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 7675500 + 59596 17428 39839 40728 -0.007652552678109714 SLYSFQEF 8 Unmodified _SLYSFQEF_ 0 0 0 REV__ENST00000560834.1_1_15:44751212-44776450:+|nuORF REV__ENST00000560834.1_1_15:44751212-44776450:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7735290527344 2 510.737283 1019.46001 0.30614 0.00015636 -0.17445 -8.9098E-05 0.13169 6.7259E-05 510.73736291337184 84.593 0.25484 84.093 83.998 84.253 -0.49961 17 11 2 0 0 0 8.7369 1 46311 46311 2.8892 0 1 328650 + 59597 28831 39840 40729 69374 69374 -0.048939140933725866 SLYSQVHQ 8 Unmodified _SLYSQVHQ_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.49072265625 2 481.240524 960.466495 NaN NaN NaN NaN NaN NaN NaN 72.213 1 72.252 71.752 72.752 0.039024 0 0 0 0.6528 1 39762 39762 30.637 1.555 1 59598 9279 39841 40730 69375 69375 -0.015319761419959832 SLYTHLQGCT 10 Unmodified _SLYTHLQGCT_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL;EVPL|p.P368Lfs*73|1|0.1|ENSG00000167880|chr17:76019562-76019562|G/-|frameshift_variant;ENST00000587569.5_1_17:74014525-74023279:-|nuORF ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7921142578125 2 561.766049 1121.51754 -0.093718 -5.2648E-05 0.64245 0.00036091 0.54873 0.00030826 562.2672523242938 30.875 0.18198 30.875 30.771 30.953 0 17 8 3 0 0 0 0.22941 1 16021 16021 13.906 7.7003 1 1783700 59599 7678 39842 40731 69376 69376 -0.03835395159467225 SLYYFFTL 8 Unmodified _SLYYFFTL_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|248|1|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|248|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2662963867188 2 527.268219 1052.52188 1.2266 0.00064673 0.50471 0.00026612 1.7313 0.00091284 527.2686844066304 54.31 0.51768 48.444 48.211 48.729 -5.8653 75 31 3 0 0 0 0.30525 1 34319 34319 56.541 12.683 1 102650000 + 59600 29374 39843 40732 69377 69377 -0.0022756267421755183 SMADIPLGFGV 11 Unmodified _SMADIPLGFGV_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;ENST00000485801.1_1_3:132120486-132120636:+|nuORF ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.781982421875 2 553.781167 1105.54778 0.59979 0.00033215 1.4154 0.00078381 2.0152 0.001116 553.7820163764655 92.186 0.29439 91.705 91.541 91.836 -0.48092 20 13 2 0 0 0 0.63851 1 50396 50396 9.3831 3.029 1 379300 59601 4426 39844 40733 69378 69378 -0.0007703649425820913 SMADIPLGFGV 11 Unmodified _SMADIPLGFGV_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;ENST00000485801.1_1_3:132120486-132120636:+|nuORF ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MSMS AL20221201_MKP_PDAC_01 4 553.781005859375 2 553.781167 1105.54778 NaN NaN NaN NaN NaN NaN NaN 99.752 1 93.577 93.077 94.077 -6.1757 0 0 0 0.15837 1 66522 66522 41.84 17.819 1 59602 4426 39844 40733 69379 69379 -0.0007703649425820913 SMAHAHGL 8 Unmodified _SMAHAHGL_ 0 0 0 nc|ENSG00000151615|Q12837-2|POU4F2;ENSG00000151615|ENST00000281321|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 MSMS AL20221201_MKP_PDAC_01 4 412.5504760742188 2 412.197605 822.380657 NaN NaN NaN NaN NaN NaN NaN 12.116 1 9.634 9.134 10.134 -2.482 0 0 0 0.97444 1 6115 6115 0.79363 0 1 59603 6128 39845 40734 69380 69380 -0.0376383952851711 SMASEEVK 8 Unmodified _SMASEEVK_ 0 0 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4;ENST00000526700.5_1_16:70530266-70542451:-|nuORF nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 881.4132080078125 1 880.408059 879.400783 0.12911 0.00011367 -0.40106 -0.0003531 -0.27196 -0.00023943 880.4065686067 50.46 0.23121 50.46 50.35 50.582 0 13 10 2 0 0 0 0.78849 1 27838 27838 9.3474 0.75416 1 1973800 59604 2097 39846 40735 69381 69381 -0.04374133379201339 SMAVVIPEA 9 Oxidation (M) _SM(Oxidation (M))AVVIPEA_ SM(1)AVVIPEA SM(55)AVVIPEA 0 0 1 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7417907714844 2 466.741511 931.468469 0.53215 0.00024838 -0.67982 -0.0003173 -0.14768 -6.8926E-05 466.7412086259975 49.105 0.38625 49.105 48.89 49.277 0 41 18 3 0 0 0 0.031062 1 26972 26972 54.774 10.367 1 3560700 59605 4157 39847 40736 69382 69382 739 -6.834484111095662E-06 SMCEECCFEE 10 Unmodified _SMCEECCFEE_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.2422485351562 2 605.181985 1208.34942 NaN NaN NaN NaN NaN NaN NaN 6.8494 1 6.8584 6.3584 7.3584 0.0089307 0 0 0 1.0061 1 3426 3426 0 0 1 + 59606 20837 39848 40737 69383 69383 -0.24642329522066575 SMCSSFFVML 10 Unmodified _SMCSSFFVML_ 0 0 0 REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF REV__ENST00000476149.1_1_2:118582113-118584081:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.250732421875 2 576.250331 1150.48611 1.1653 0.00067148 1.0351 0.00059649 2.2004 0.001268 576.2508054939594 81.286 0.46855 75.11 74.927 75.395 -6.1757 85 26 4 0 0 0 0.50944 1 53520 53520 15.847 3.3156 1 48415000 + 59607 17799 39849 40738 69384 69384 -0.08311427509397618 SMDPLPVFL 9 Oxidation (M) _SM(Oxidation (M))DPLPVFL_ SM(1)DPLPVFL SM(74)DPLPVFL 0 0 1 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7646484375 2 517.764986 1033.51542 0.31555 0.00016338 -0.86656 -0.00044867 -0.55101 -0.00028529 517.7646412261843 92.377 0.50455 92.377 92.129 92.633 0 123 37 4 0 0 0 0.012148 1 51067 51067 74.423 36.272 1 9892000 59608 5511 39850 40739 69385 69385 1012 1.7610275335755432E-06 SMDPLPVFL 9 Oxidation (M) _SM(Oxidation (M))DPLPVFL_ SM(1)DPLPVFL SM(57)DPLPVFL 0 0 1 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7648315429688 2 517.764986 1033.51542 0.33631 0.00017413 -0.86253 -0.00044659 -0.52621 -0.00027245 517.7647211228195 92.888 0.57866 92.431 92.149 92.728 -0.4574 91 29 4 0 0 0 0.026094 1 50765 50765 57.471 27.247 1 17472000 59609 5511 39850 40739 69386 69386 1012 1.7610275335755432E-06 SMDPLPVFL 9 Oxidation (M) _SM(Oxidation (M))DPLPVFL_ 0 0 1 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.764986 1033.51542 1.5143 0.00078407 -0.28461 -0.00014736 1.2297 0.0006367 517.7649308006636 92.371 0.38425 92.402 92.162 92.547 0.030197 -0.0017227 0.00055397 NaN 74.423 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2369700 59610 5511 39850 40739 1012 1.7610275335755432E-06 SMDPLPVFL 9 Unmodified _SMDPLPVFL_ 0 0 0 nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;ENST00000492528.1_1_1:151380799-151380985:-|nuORF nc|ENSG00000143442|Q7Z3K3-5|POGZ nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7683715820312 2 509.767529 1017.5205 0.97193 0.00049546 0.23814 0.0001214 1.2101 0.00061686 509.7680483527325 101.19 0.25694 95.016 94.85 95.107 -6.1757 23 14 3 0 0 0 0.0083087 1 67839 67839 97.075 64.958 1 77964000 59611 5511 39850 40740 69387 69387 0.012444799653621885 SMDSELDYD 9 Unmodified _SMDSELDYD_ 0 0 0 REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.6994018554688 2 537.700237 1073.38592 -0.1889 -0.00010157 1.3902 0.0007475 1.2013 0.00064593 537.7002709362979 29.177 0.48827 29.177 28.923 29.411 0 56 23 3 0 0 0 0.49272 1 15063 15063 7.9102 3.1541 1 3774800 + 59612 22316 39851 40741 69388 69388 -0.14783670037877528 SMDWDLKEEL 10 Unmodified _SMDWDLKEEL_ 0 0 0 ENST00000453689.5_3_20:2821420-2841138:+|nuORF;nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16 ENST00000453689.5_3_20:2821420-2841138:+|nuORF ENST00000453689.5_3_20:2821420-2841138:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5286560058594 3 422.528794 1264.56455 0.47976 0.00020271 -0.6617 -0.00027959 -0.18195 -7.6877E-05 422.52850474332257 47.571 0.25876 47.571 47.427 47.686 0 19 11 2 0 0 0 0.69377 1 26065 26065 1.7423 0 1 3022000 59613 10529 39852 40742 69389 69389 -0.057145803989442356 SMEITELEF 9 Unmodified _SMEITELEF_ 0 0 0 PMEPA1|p.G222Rfs*42|1|0.12|ENSG00000124225|chr20:57652235-57652253|GCCCCTCCATGCGCCCGCC/-|frameshift_variant;PMEPA1|p.S209Afs*61|1|0.25|ENSG00000124225|chr20:57652293-57652293|G/-|frameshift_variant;ENSG00000124225|ENST00000341744|PMEPA1 PMEPA1|p.G222Rfs*42|1|0.12|ENSG00000124225|chr20:57652235-57652253|GCCCCTCCATGCGCCCGCC/-|frameshift_variant PMEPA1|p.G222Rfs*42|1|0.12|ENSG00000124225|chr20:57652235-57652253|GCCCCTCCATGCGCCCGCC/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7261962890625 2 549.754815 1097.49508 -0.056475 -3.1047E-05 0.4211 0.0002315 0.36463 0.00020046 549.755849160515 23.852 0.20282 23.852 23.752 23.955 0 31 9 4 0 0 0 0.19891 1 12169 12169 11.64 0.81637 1 988490 59614 3766 39853 40743 69390 69390 -0.04977039347727441 SMELIYYWY 9 Unmodified _SMELIYYWY_ 0 0 0 REV__ENSG00000154227|ENST00000679737|CERS3 REV__ENSG00000154227|ENST00000679737|CERS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.529052734375 3 423.194976 1266.5631 -0.28964 -0.00012257 -0.94673 -0.00040065 -1.2364 -0.00052322 423.19479648709523 48.343 0.33807 48.343 48.193 48.531 0 53 16 4 0 0 0 0.54213 1 26486 26486 4.897 0.49086 1 30439000 + 59615 21215 39854 40744 69391 69391 -0.05952169697070531 SMEVAEQGRGT 11 Unmodified _SMEVAEQGRGT_ 0 0 0 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 ENSG00000196569|ENST00000421865|LAMA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7700805664062 2 582.769319 1163.52409 0.72614 0.00042317 0.38214 0.0002227 1.1083 0.00064587 582.7695936380694 42.105 0.47473 37.421 37.173 37.648 -4.6846 83 29 4 0 0 0 0.65846 1 25428 25428 8.1555 0.24537 1 67635000 59616 9842 39855 40745 69392 69392 -0.05113501998744141 SMFCHRRFRFC 11 Unmodified _SMFCHRRFRFC_ 0 0 0 REV__ENST00000246868.6_1_7:66453265-66453361:-|nuORF REV__ENST00000246868.6_1_7:66453265-66453361:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 745.3417358398438 2 745.341743 1488.66893 NaN NaN NaN NaN NaN NaN NaN 17.16 1 17.165 16.665 17.665 0.0050564 0 0 0 0.9435 1 8643 8643 0 0 1 + 59617 24869 39856 40746 69393 69393 -0.05585435604257327 SMFFFVCLF 9 Unmodified _SMFFFVCLF_ 0 0 0 ENST00000561385.5_1_15:50189347-50194027:-|nuORF ENST00000561385.5_1_15:50189347-50194027:-|nuORF ENST00000561385.5_1_15:50189347-50194027:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.1840515136719 3 380.846742 1139.5184 0.12289 4.68E-05 0.76646 0.0002919 0.88935 0.00033871 380.8471100687447 66.218 0.48271 65.735 65.563 66.046 -0.48323 61 25 4 0 0 0 0.58466 1 36162 36162 1.1933 0 1 11946000 59618 15321 39857 40747 69394 69394 -0.045782720441138736 SMFHNRHLF 9 Oxidation (M) _SM(Oxidation (M))FHNRHLF_ SM(1)FHNRHLF SM(44)FHNRHLF 0 0 1 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1934204101562 3 402.194192 1203.56075 NaN NaN NaN NaN NaN NaN NaN 25.479 1 25.503 25.003 26.003 0.024429 0 0 0 0.097684 1 13187 13187 43.982 33.667 1 59619 3948 39858 40748 69395 69395 705 -0.032891605915210675 SMFHNRHLF 9 Unmodified _SMFHNRHLF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8631286621094 3 396.862554 1187.56583 1.3163 0.00052237 1.5548 0.00061705 2.8711 0.0011394 396.86263840894037 87.771 0.23467 81.595 81.439 81.673 -6.1757 15 12 2 0 0 0 0.05447 1 57907 57907 40.239 29.924 1 10722000 59620 3948 39858 40749 69396 69396 -0.020448567289122366 SMFHNRHLF 9 Unmodified _SMFHNRHLF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MSMS AL20221201_MKP_PDAC_01 4 397.1972351074219 3 396.862554 1187.56583 NaN NaN NaN NaN NaN NaN NaN 88.006 1 81.83 81.33 82.33 -6.1757 0 0 0 0.12343 1 58050 58050 37.075 30.038 1 59621 3948 39858 40749 69397 69397 -0.020448567289122366 SMFSVRLLF 9 Unmodified _SMFSVRLLF_ 0 0 0 REV__ENST00000564310.1_2_15:45895313-45908032:+|nuORF REV__ENST00000564310.1_2_15:45895313-45908032:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.30322265625 2 550.30207 1098.58959 1.0934 0.00060172 -0.57046 -0.00031393 0.52298 0.00028779 550.3017794049864 86.689 1.5152 80.513 79.87 81.385 -6.1757 137 82 2 0 0 0 0.37578 1 57094 57094 19.257 3.4098 1 20333000 + 59622 28892 39859 40750 69398 69398 0.044235639849148356 SMHIDNEVPL 10 Unmodified _SMHIDNEVPL_ 0 0 0 REV__ENST00000276602.10_1_8:73926160-73932919:+|nuORF REV__ENST00000276602.10_1_8:73926160-73932919:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7775268554688 2 577.779156 1153.54376 NaN NaN NaN NaN NaN NaN NaN 67.465 1 67.465 66.965 67.965 0 0 0 0 0.99091 1 37619 37619 1.6526 0 1 + 59623 25177 39860 40751 69399 69399 -0.02687125987949912 SMISSTMLIL 10 Unmodified _SMISSTMLIL_ 0 0 0 REV__ENSG00000196715|ENST00000360768|VKORC1L1 REV__ENSG00000196715|ENST00000360768|VKORC1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.292236328125 2 548.293053 1094.57155 1.1773 0.00064551 -0.53267 -0.00029206 0.64464 0.00035345 548.2924520230102 94.426 0.61604 88.25 87.88 88.496 -6.1757 86 35 3 0 0 0 0.42068 1 62494 62494 20.454 20.454 1 27010000 + 59624 23863 39861 40752 69400 69400 0.028050609479123523 SMLDAVLGV 9 Unmodified _SMLDAVLGV_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7445983886719 2 452.744053 903.473554 1.0903 0.00049362 1.5872 0.0007186 2.6775 0.0012122 452.7442594189991 99.968 0.16944 93.792 93.715 93.884 -6.1757 17 11 2 0 0 0 0.023164 1 66770 66770 60.39 18.295 1 13276000 59625 7640 39862 40753 69401 69401 0.017956204142024035 SMLGHTTKRSW 11 Unmodified _SMLGHTTKRSW_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.33349609375 2 652.332421 1302.65029 1.1718 0.00076442 -0.26229 -0.0001711 0.90954 0.00059332 652.3320352563773 95.356 0.2445 89.181 89.071 89.316 -6.1757 19 13 2 0 0 0 0.24216 1 63146 63146 29.841 8.3036 1 8410900 59626 6962 39863 40754 69402 69402 0.011070492972066859 SMLGHTTKRSW 11 Unmodified _SMLGHTTKRSW_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3344116210938 2 652.332421 1302.65029 1.1453 0.00074713 0.5639 0.00036785 1.7092 0.001115 652.3328527180973 96.209 0.40482 90.033 89.848 90.253 -6.1757 41 24 2 0 0 0 0.12183 1 63847 63847 39.95 5.548 1 14001000 59627 6962 39863 40754 69403 69403 0.011070492972066859 SMLLFSRF 8 Unmodified _SMLLFSRF_ 0 0 0 ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENST00000442031.1_1_X:51665090-51665543:-|nuORF ENST00000442031.1_1_X:51665090-51665543:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3045654296875 2 500.767863 999.521173 0.31338 0.00015693 -2.5544 -0.0012791 -2.241 -0.0011222 500.76695105256726 60.205 0.24466 60.152 60.036 60.28 -0.053062 21 13 2 0 0 0 8.7369 1 32880 32880 5.7604 0 1 5603300 59628 13403 39864 40755 69404 69404 0.021393194050574493 SMLTVAVY 8 Unmodified _SMLTVAVY_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 883.4575805664062 1 883.459367 882.45209 0.095128 8.4042E-05 -0.78373 -0.00069239 -0.6886 -0.00060835 883.4588772293373 52.585 0.39655 52.585 52.402 52.798 0 25 17 2 0 0 0 0.44122 1 29081 29081 40.449 1.4563 1 1845800 59629 3090 39865 40756 69405 69405 0.006162353854847424 SMMDRMFAL 9 Unmodified _SMMDRMFAL_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MSMS AL20221201_MKP_PDAC_01 4 551.2496337890625 2 551.248123 1100.48169 NaN NaN NaN NaN NaN NaN NaN 96.049 1 89.873 89.373 90.373 -6.1757 0 0 0 0.43047 1 63637 63637 18.373 5.8415 1 59630 940 39866 40757 69406 69406 -0.06452891932326565 SMNCRCENN 9 Unmodified _SMNCRCENN_ 0 0 0 ENSG00000044524|ENST00000336596|EPHA3;nc|ENSG00000044524|P29320-2|EPHA3 ENSG00000044524|ENST00000336596|EPHA3 ENSG00000044524|ENST00000336596|EPHA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2816772460938 2 535.694243 1069.37393 0.46601 0.00024964 -1.892 -0.0010135 -1.426 -0.00076387 535.6929792735973 82.933 0.61055 82.435 82.203 82.814 -0.49751 107 25 7 0 0 0 0.21642 1 45462 45462 3.5965 0 1 14297000 59631 672 39867 40758 69407 69407 -0.1579788853368882 SMNGLNGNCY 10 Unmodified _SMNGLNGNCY_ 0 0 0 REV__nc|ENSG00000136352|P43699|NKX2-1 REV__nc|ENSG00000136352|P43699|NKX2-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7138061523438 2 536.712959 1071.41136 0.54272 0.00029128 0.20812 0.0001117 0.75083 0.00040298 536.7132082337441 59.746 0.27555 59.746 59.627 59.902 0 21 12 2 0 0 0 0.6966 1 33360 33360 3.2813 0.39209 1 2000400 + 59632 20156 39868 40759 69408 69408 -0.12148473996444409 SMNVLVYKF 9 Unmodified _SMNVLVYKF_ 0 0 0 REV__ENSG00000100373|ENST00000216211|UPK3A REV__ENSG00000100373|ENST00000216211|UPK3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2684326171875 2 550.794078 1099.5736 0.3941 0.00021707 2.3149 0.001275 2.709 0.0014921 550.7953384441448 58.663 0.28165 58.663 58.467 58.748 0 21 11 3 0 0 0 0.21367 1 32599 32599 2.0598 0 1 898950 + 59633 18054 39869 40760 69409 69409 0.027798577480325548 SMPACPSWQN 10 Unmodified _SMPACPSWQN_ 0 0 0 REV__ENSG00000079999|ENST00000171111|KEAP1 REV__ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1558532714844 3 374.156526 1119.44775 -0.34092 -0.00012756 -0.40845 -0.00015282 -0.74937 -0.00028038 374.15645117349885 56.202 0.48674 56.202 55.987 56.474 0 49 22 3 0 0 0 0.67033 1 31311 31311 3.3196 0 1 5048800 + 59634 17658 39870 40761 69410 69410 -0.10719597099705425 SMPTEVNELQ 10 Unmodified _SMPTEVNELQ_ 0 0 0 REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3 REV__nc|ENSG00000189298|Q9BRR0-2|ZKSCAN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.9385375976562 2 574.268621 1146.52269 0.58358 0.00033513 0.87587 0.00050299 1.4595 0.00083812 574.770910865531 91.682 0.22492 91.201 91.105 91.33 -0.48093 26 17 2 0 0 0 0.67033 1 50089 50089 6.2058 1.8765 1 985860 + 59635 23775 39871 40762 69411 69411 -0.04471136087499872 SMQDLVEDFK 10 Unmodified _SMQDLVEDFK_ 0 0 0 ENSG00000185069|ENST00000332411|KRT76;CON__Q01546 ENSG00000185069|ENST00000332411|KRT76 ENSG00000185069|ENST00000332411|KRT76 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2828369140625 2 606.284271 1210.55399 NaN NaN NaN NaN NaN NaN NaN 81.021 1 81.021 80.521 81.521 0 0 0 0 0.97855 1 44977 44977 2.9952 0 1 + 59636 9329 39872 40763 69412 69412 -0.04286563053415193 SMQGTEDVSF 10 Unmodified _SMQGTEDVSF_ 0 0 0 REV__ENSG00000138207|ENST00000371464|RBP4 REV__ENSG00000138207|ENST00000371464|RBP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7294921875 2 550.731871 1099.44919 NaN NaN NaN NaN NaN NaN NaN 49.396 1 49.396 48.896 49.896 0 0 0 0 0.7417 1 27180 27180 14.838 0 1 + 59637 20316 39873 40764 69413 69413 -0.09655684529980135 SMSADVPLV 9 Oxidation (M) _SM(Oxidation (M))SADVPLV_ SM(1)SADVPLV SM(78)SADVPLV 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7317810058594 2 467.731143 933.447733 1.0483 0.00049033 -0.96804 -0.00045278 0.080274 3.7547E-05 467.7306139012088 51.352 0.16316 51.352 51.229 51.393 0 13 6 3 0 0 0 0.010877 1 28357 28357 77.984 39.833 1 2210800 59638 4431 39874 40765 69414 69414 811 -0.0216527382805225 SMSADVPLV 9 Oxidation (M) _SM(Oxidation (M))SADVPLV_ SM(1)SADVPLV SM(78)SADVPLV 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4539794921875 1 934.45501 933.447733 0.82955 0.00077518 -0.81998 -0.00076624 0.0095715 8.9442E-06 934.4540106832435 51.399 0.17561 51.399 51.278 51.454 0 12 7 2 0 0 0 0.010877 1 28359 28359 77.984 51.101 1 1983300 59639 4431 39874 40765 69415 69415 811 -0.0216527382805225 SMSHAVLTTSE 11 Unmodified _SMSHAVLTTSE_ 0 0 0 ENST00000529853.1_1_11:44609006-44616389:+|nuORF ENST00000529853.1_1_11:44609006-44616389:+|nuORF ENST00000529853.1_1_11:44609006-44616389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.2794189453125 2 581.774071 1161.53359 0.977 0.00056839 3.2336 0.0018812 4.2106 0.0024496 582.2783169378974 46.007 0.18069 45.979 45.905 46.086 -0.028011 11 7 2 0 0 0 0.58219 1 24747 24747 12.241 0.60036 1 1344300 59640 14880 39875 40766 69416 69416 -0.040717337132036846 SMSLPPLYT 9 Unmodified _SMSLPPLYT_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.756591796875 2 504.757161 1007.49977 0.88803 0.00044824 0.49939 0.00025207 1.3874 0.00070031 504.7575484624532 53.857 0.50555 53.857 53.627 54.132 0 61 23 3 0 0 0 0.070838 1 29850 29850 39.957 5.8549 1 7915800 + 59641 17205 39876 40767 69417 69417 -0.0036811041431974445 SMSLPPLYT 9 Unmodified _SMSLPPLYT_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1009.565002441406 1 1008.50705 1007.49977 0.82962 0.00083668 -3.4475 -0.0034768 -2.6179 -0.0026402 1008.5043184285347 61.777 0.35635 55.601 55.404 55.76 -6.1757 23 18 2 0 0 0 0.095405 1 39731 39731 34.102 0 1 18874000 + 59642 17205 39876 40767 69418 69418 -0.0036811041431974445 SMSPKVERDPF 11 Unmodified _SMSPKVERDPF_ 0 0 0 REV__nc|ENSG00000076555|O00763-3|ACACB REV__nc|ENSG00000076555|O00763-3|ACACB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.8207397460938 2 646.818812 1291.62307 NaN NaN NaN NaN NaN NaN NaN 81.289 1 80.796 80.296 81.296 -0.49247 0 0 0 0.93224 1 44515 44515 5.7319 0.50118 1 + 59643 29507 39877 40768 69419 69419 -0.011074790338398088 SMSRYIPHPF 10 Unmodified _SMSRYIPHPF_ 0 0 0 nc|ENSG00000107036|Q4ADV7-2|RIC1;nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 nc|ENSG00000107036|Q4ADV7-2|RIC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.6505737304688 2 617.805508 1233.59646 NaN NaN NaN NaN NaN NaN NaN 76.629 1 76.15 75.65 76.65 -0.47945 0 0 0 0.91523 1 41955 41955 7.2892 2.5332 1 59644 2472 39878 40769 69420 69420 -0.0109912313453151 SMTAPCMSY 9 Unmodified _SMTAPCMSY_ 0 0 0 REV__ENST00000486048.2_1_1:151205075-151205805:+|nuORF REV__ENST00000486048.2_1_1:151205075-151205805:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.6913146972656 2 495.690106 989.36566 0.57487 0.00028496 0.55796 0.00027657 1.1328 0.00056153 495.69036097753894 57.298 0.33245 57.298 57.135 57.467 0 23 14 2 0 0 0 0.49272 1 31914 31914 7.9102 2.1497 1 2322500 + 59645 27793 39879 40770 69421 69421 -0.12944835503037666 SMTLAIHEI 9 Oxidation (M) _SM(Oxidation (M))TLAIHEI_ SM(1)TLAIHEI SM(55)TLAIHEI 0 0 1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7661743164062 2 515.765517 1029.51648 0.83102 0.00042861 -0.70063 -0.00036136 0.13039 6.7253E-05 515.7655891517937 46.251 0.65132 46.251 46.088 46.74 0 47 30 2 0 0 0 0.031062 2 25255 25255;25366 54.774 34.32 1 6548000 59646 5547 39880 40771 69422;69423 69422 1018 0.002903904716276884 SMTLAIHEI 9 Unmodified _SMTLAIHEI_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7677307128906 2 507.76806 1013.52157 0.7223 0.00036676 0.72646 0.00036887 1.4488 0.00073563 507.76815306518904 63.287 0.3379 57.111 57 57.338 -6.1757 26 19 2 0 0 0 0.019303 1 40899 40899 64.236 31.931 1 10910000 59647 5547 39880 40772 69424 69424 0.01534694334247888 SMTRYFYLF 9 Unmodified _SMTRYFYLF_ 0 0 0 nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 nc|ENSG00000196954|P49662-2|CASP4 nc|ENSG00000196954|P49662-2|CASP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.2975463867188 2 614.296985 1226.57942 NaN NaN NaN NaN NaN NaN NaN 84.275 1 84.338 83.838 84.838 0.063171 0 0 0 0.049786 1 46628 46628 57.722 30.838 1 59648 9889 39881 40773 69425 69425 -0.024810437403175456 SMTRYFYLF 9 Oxidation (M) _SM(Oxidation (M))TRYFYLF_ SM(1)TRYFYLF SM(50)TRYFYLF 0 0 1 nc|ENSG00000196954|P49662-2|CASP4;ENSG00000196954|ENST00000444739|CASP4;ENST00000531091.5_1_11:104774182-104777189:-|nuORF;ENST00000529565.1_1_11:104815482-104817977:-|nuORF;nc|ENSG00000204403|Q6UXS9-3|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12 nc|ENSG00000196954|P49662-2|CASP4 nc|ENSG00000196954|P49662-2|CASP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.294677734375 2 622.294442 1242.57433 1.0462 0.00065104 -0.314 -0.0001954 0.73219 0.00045564 622.2944143063969 95.952 0.58831 89.776 89.481 90.069 -6.1757 114 36 4 0 0 0 0.040683 1 63391 63391 49.554 17.249 1 110490000 59649 9889 39881 40774 69426 69426 1589 -0.03725347602949114 SMVDMEMCNEC 11 Unmodified _SMVDMEMCNEC_ 0 0 0 REV__ENST00000526146.5_1_11:118184333-118186254:+|nuORF REV__ENST00000526146.5_1_11:118184333-118186254:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.2106323242188 2 646.21022 1290.40589 NaN NaN NaN NaN NaN NaN NaN 81.165 1 81.165 80.665 81.665 0 0 0 0 0.9435 1 45054 45054 0 0 1 + 59650 24079 39882 40775 69427 69427 -0.22770024957071655 SMVDVVMLL 9 2 Oxidation (M) _SM(Oxidation (M))VDVVM(Oxidation (M))LL_ SM(1)VDVVM(1)LL SM(57)VDVVM(57)LL 0 0 2 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.76416015625 2 519.764129 1037.5137 0.36303 0.00018869 0.15427 8.0183E-05 0.5173 0.00026887 519.7644632798529 80.394 0.4338 80.394 80.158 80.592 0 54 20 3 0 0 0 0.026094 1 44593 44593 57.471 34.323 1 3037800 59651 10287 39883 40776 69428 69428 1674;1675 -0.0035520097749213164 SMVDVVMLL 9 2 Oxidation (M) _SM(Oxidation (M))VDVVM(Oxidation (M))LL_ SM(1)VDVVM(1)LL SM(48)VDVVM(48)LL 0 0 2 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7648315429688 2 519.764129 1037.5137 0.74859 0.00038909 -0.34719 -0.00018046 0.4014 0.00020863 519.7640596816642 80.947 0.38535 80.455 80.176 80.561 -0.49247 45 16 3 0 0 0 0.042911 1 44235 44235 48.346 31.404 1 2048400 59652 10287 39883 40776 69429 69429 1674;1675 -0.0035520097749213164 SMVDVVMLL 9 Oxidation (M) _SMVDVVM(Oxidation (M))LL_ SMVDVVM(1)LL SM(-77)VDVVM(77)LL 0 0 1 nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6;ENST00000462875.1_1_6:31609234-31609708:-|nuORF nc|ENSG00000204463|P46379-4|BAG6 nc|ENSG00000204463|P46379-4|BAG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7673034667969 2 511.766671 1021.51879 0.99086 0.00050709 -0.51727 -0.00026472 0.47359 0.00024237 511.7660172262547 100.42 0.20794 94.244 94.122 94.33 -6.1757 32 12 4 0 0 0 0.0086179 1 67130 67130 89.427 47.332 2 40942000 59653 10287 39883 40777 69430 69430 1674;1675 0.008891028851166993 SMVEDITGLRL 11 Unmodified _SMVEDITGLRL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3286743164062 2 617.329013 1232.64347 0.35767 0.0002208 1.2732 0.00078598 1.6309 0.0010068 617.329752459389 93.568 0.25671 87.392 87.247 87.504 -6.1757 27 15 2 0 0 0 0.096911 2 61884 61884;62021 42.835 15.206 1 14293000 59654 1675 39884 40778 69431;69432 69431 0.03645691625956715 SMWSEYTI 8 Unmodified _SMWSEYTI_ 0 0 0 nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7232055664062 2 508.723318 1015.43208 0.36488 0.00018562 -0.46524 -0.00023668 -0.10036 -5.1056E-05 508.7231339528773 63.055 0.25346 63.055 62.942 63.195 0 17 10 2 0 0 0 0.80232 1 35239 35239 5.2307 0 1 785670 59655 4826 39885 40779 69433 69433 -0.07501560345122016 SMYCVQCKMPV 11 Unmodified _SMYCVQCKMPV_ 0 0 0 nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 nc|ENSG00000100505|Q9C026-5|TRIM9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.7609252929688 2 644.781472 1287.54839 NaN NaN NaN NaN NaN NaN NaN 93.927 1 93.927 93.427 94.427 0 0 0 0 0.94307 1 51924 51924 0.30703 0 1 59656 1837 39886 40780 69434 69434 -0.08388024432747443 SMYDKVLML 9 2 Oxidation (M) _SM(Oxidation (M))YDKVLM(Oxidation (M))L_ SM(1)YDKVLM(1)L SM(46)YDKVLM(46)L 0 0 2 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2708129882812 2 566.27486 1130.53517 0.71062 0.00040241 0.36097 0.00020441 1.0716 0.00060681 566.2752128657764 53.85 0.48446 53.85 53.627 54.111 0 58 22 3 0 0 0 0.047714 1 29812 29812 45.74 7.7659 1 27820000 59657 5915 39887 40781 69435 69435 1059;1060 -0.02487815948802563 SMYDKVLML 9 2 Oxidation (M) _SM(Oxidation (M))YDKVLM(Oxidation (M))L_ SM(1)YDKVLM(1)L SM(50)YDKVLM(50)L 0 0 2 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5;ENST00000485692.1_1_9:135919116-135919314:+|nuORF nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2760009765625 2 566.27486 1130.53517 NaN NaN NaN NaN NaN NaN NaN 54.47 1 54.003 53.503 54.503 -0.46664 0 0 0 0.076083 1 29518 29518 49.554 9.597 1 59658 5915 39887 40781 69436 69436 1059;1060 -0.02487815948802563 SMYEEEINE 9 Unmodified _SMYEEEINE_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1;ENST00000504788.5_1_5:126112928-126171953:+|nuORF ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2300415039062 2 572.229161 1142.44377 NaN NaN NaN NaN NaN NaN NaN 87.842 1 87.842 87.342 88.342 0 0 0 0 0.85261 1 48633 48633 0 0 1 59659 2962 39888 40782 69437 69437 -0.1217540811244362 SMYGVDLHHA 10 Unmodified _SMYGVDLHHA_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;ENST00000578432.2_1_18:5429333-5433551:-|nuORF;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.1749267578125 3 377.174686 1128.50223 1.1023 0.00041575 0.24489 9.2367E-05 1.3472 0.00050812 377.17456945600713 38.895 0.35007 34.445 34.282 34.632 -4.4509 43 21 3 0 0 0 0.33553 1 22987 22987 16.566 14.48 1 17285000 59660 1487;1286 39889 40783 69438 69438 -0.05688261956652241 SMYSLQGIHG 10 Unmodified _SMYSLQGIHG_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8428039550781 3 364.842936 1091.50698 1.8186 0.00066349 0.53987 0.00019697 2.3584 0.00086045 364.84248708324105 20.757 0.17171 18.064 17.977 18.148 -2.693 16 11 2 0 0 0 0.69377 1 11103 11103 1.7423 0 1 1327000 59661 8942 39890 40784 69439 69439 -0.035113778139020724 SNAETNPA 8 Unmodified _SNAETNPA_ 0 0 0 REV__nc|ENSG00000138182|Q96Q89-4|KIF20B REV__nc|ENSG00000138182|Q96Q89-4|KIF20B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1802368164062 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 8.6628 1 8.6628 8.1628 9.1628 0 0 0 0 0.97444 1 4133 4133 0.6015 0 1 + 59662 20314 39891 40785 69440 69440 -0.06336803855481321 SNANGLFSFL 10 Unmodified _SNANGLFSFL_ 0 0 0 ENST00000337339.6_1_X:11784030-11784237:+|nuORF ENST00000337339.6_1_X:11784030-11784237:+|nuORF ENST00000337339.6_1_X:11784030-11784237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2699584960938 2 535.269281 1068.52401 0.93493 0.00050044 -0.58577 -0.00031354 0.34916 0.0001869 535.2687706045542 79.78 0.44518 79.291 79.008 79.454 -0.48932 29 19 2 0 0 0 0.5933 2 43706 43593;43706 11.495 0 1 1251900 59663 11926 39892 40786 69441;69442 69442 -0.007511339364327796 SNAPSWLC 8 Unmodified _SNAPSWLC_ 0 0 0 REV__ENST00000297350.8_1_8:119941002-119941074:-|nuORF REV__ENST00000297350.8_1_8:119941002-119941074:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.1947021484375 2 439.19727 876.379988 NaN NaN NaN NaN NaN NaN NaN 73.909 1 73.909 73.409 74.409 0 0 0 0 0.97444 1 41139 41139 0.79363 0 1 + 59664 25280 39893 40787 69443 69443 -0.06314678968226417 SNCCNANCWM 10 Unmodified _SNCCNANCWM_ 0 0 0 REV__ENSG00000149516|ENST00000278865|MS4A3 REV__ENSG00000149516|ENST00000278865|MS4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.1863403320312 2 573.185197 1144.35584 0.27854 0.00015965 -0.20515 -0.00011759 0.073386 4.2064E-05 573.1848672572099 69.974 0.34678 69.974 69.734 70.08 0 85 45 2 0 0 0 0.72607 1 38908 38908 0 0 1 9855300 + 59665 21003 39894 40788 69444 69444 -0.2105634678007391 SNCLAREMF 9 Unmodified _SNCLAREMF_ 0 0 0 REV__ENST00000266673.9_1_12:72097750-72097828:+|nuORF REV__ENST00000266673.9_1_12:72097750-72097828:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7412109375 2 535.741519 1069.46849 NaN NaN NaN NaN NaN NaN NaN 77.467 1 77.467 76.967 77.967 0 0 0 0 0.82396 1 43065 43065 4.756 0 1 + 59666 25104 39895 40789 69445 69445 -0.06347006720056925 SNDEDDDDDDD 11 Unmodified _SNDEDDDDDDD_ 0 0 0 REV__ENSG00000106819|ENST00000375544|ASPN REV__ENSG00000106819|ENST00000375544|ASPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.1787719726562 2 635.179105 1268.34366 NaN NaN NaN NaN NaN NaN NaN 15.884 1 15.89 15.39 16.39 0.0050564 0 0 0 0.9435 1 7937 7937 0 0 1 + 59667 18539 39896 40790 69446 69446 -0.27978018703220187 SNEEREQW 8 Unmodified _SNEEREQW_ 0 0 0 REV__nc|ENSG00000118058|Q03164-2|KMT2A REV__nc|ENSG00000118058|Q03164-2|KMT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2322998046875 2 539.233427 1076.4523 0.19179 0.00010342 -1.7139 -0.00092421 -1.5221 -0.00082079 539.2323349946621 99.76 0.16434 93.584 93.474 93.638 -6.1757 23 10 3 0 0 0 0.65096 1 66538 66538 20.454 3.3671 1 53915000 + 59668 19133 39897 40791 69447 69447 -0.082866733609535 SNFCSHQFCS 10 Unmodified _SNFCSHQFCS_ 0 0 0 REV__ENST00000558575.1_1_14:75761222-75762892:+|nuORF REV__ENST00000558575.1_1_14:75761222-75762892:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1141662597656 3 387.148031 1158.42226 0.18998 7.3552E-05 -0.56469 -0.00021862 -0.3747 -0.00014507 387.147757177654 54.879 0.26413 54.879 54.79 55.054 0 18 11 2 0 0 0 0.23993 1 30452 30452 1.7423 0.54893 1 2873500 + 59669 28803 39898 40792 69448 69448 -0.1506107162213084 SNFLKIEICSS 11 Unmodified _SNFLKIEICSS_ 0 0 0 ENST00000556419.5_1_14:23468454-23479348:-|nuORF ENST00000556419.5_1_14:23468454-23479348:-|nuORF ENST00000556419.5_1_14:23468454-23479348:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8951416015625 3 414.212918 1239.61692 -0.029763 -1.2328E-05 -1.0889 -0.00045102 -1.1186 -0.00046335 414.21258180185106 20.43 0.24076 20.441 20.294 20.535 0.010551 39 13 4 0 0 0 0.30482 1 10363 10363 4.1166 2.0306 1 4010600 59670 15237 39899 40793 69449 69449 0.006700027346369097 SNFQKMYQMF 10 Unmodified _SNFQKMYQMF_ 0 0 0 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8665466308594 3 441.866865 1322.57876 1.0585 0.00046773 -0.13571 -5.9968E-05 0.92282 0.00040776 442.2012397290515 57.494 0.17443 57.428 57.359 57.533 -0.066036 13 8 2 0 0 0 0.69377 1 31317 31317 1.7423 1.2363 1 1440700 59671 5092 39900 40794 69450 69450 -0.06962206451680686 SNFRGGLGGG 10 Unmodified _SNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2308349609375 2 461.230491 920.446428 0.18963 8.7461E-05 0.50255 0.00023179 0.69218 0.00031925 461.230737979858 22.958 0.79208 22.958 22.796 23.588 0 81 41 3 0 0 0 0.0055438 2 11741 11637;11741 96.936 47.267 1 6202600 + 59672 165 39901 40795 69451;69452 69452 -0.0169772708192113 SNFRGGLGGG 10 Unmodified _SNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2294006347656 2 461.230491 920.446428 -0.18544 -8.5531E-05 -1.0025 -0.00046239 -1.188 -0.00054792 461.2300157383873 23.035 0.26438 23.048 22.9 23.165 0.012396 35 13 3 0 0 0 0.021614 2 11786 11677;11786 74.2 34.242 1 17347000 + 59673 165 39901 40795 69453;69454 69454 -0.0169772708192113 SNFRGGLGGG 10 Unmodified _SNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2303161621094 2 461.230491 920.446428 NaN NaN NaN NaN NaN NaN NaN 22.996 1 23.014 22.514 23.514 0.01749 0 0 0 0.21506 1 11831 11831 41.956 18.807 1 + 59674 165 39901 40795 69455 69455 -0.0169772708192113 SNFRGGLGGG 10 Unmodified _SNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2300720214844 2 461.230491 920.446428 0.061121 2.8191E-05 -1.1488 -0.00052986 -1.0877 -0.00050167 461.22987011441967 26.021 0.3419 23.07 22.857 23.199 -2.9511 51 22 3 0 0 0 0.010233 1 14210 14210 87.258 41.518 1 29360000 + 59675 165 39901 40795 69456 69456 -0.0169772708192113 SNFRGGLGGGY 11 Unmodified _SNFRGGLGGGY_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.761474609375 2 542.762155 1083.50976 -0.46309 -0.00025135 0.65622 0.00035617 0.19314 0.00010483 542.7627442064759 33.989 0.24891 33.798 33.668 33.917 -0.19131 21 9 3 0 0 0 0.004841 1 17729 17729 75.571 44.934 1 3733700 + 59676 165 39902 40796 69457 69457 -0.02865786364691303 SNFRGGLGGGY 11 Unmodified _SNFRGGLGGGY_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.762155 1083.50976 0.092992 5.0473E-05 -0.26688 -0.00014485 -0.17389 -9.4379E-05 543.2634083660823 33.704 0.12016 33.733 33.672 33.792 0.028934 -0.091146 -0.00068825 NaN 75.571 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 780930 + 59677 165 39902 40796 -0.02865786364691303 SNFTFWREPL 10 Unmodified _SNFTFWREPL_ 0 0 0 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000487576.1_1_2:11963299-11964914:+|nuORF;ENST00000475922.1_1_2:11959598-11964914:+|nuORF nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8843383789062 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 53.794 1 53.727 53.227 54.227 -0.066936 0 0 0 0.80293 1 29198 29198 12.175 3.7304 1 59678 4594 39903 40797 69458 69458 -0.006117980909493781 SNGDVILVY 9 Unmodified _SNGDVILVY_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5094604492188 1 979.509488 978.502212 0.099571 9.7531E-05 0.96583 0.00094604 1.0654 0.0010436 979.5104340203891 63.794 0.36348 63.794 63.59 63.953 0 32 14 3 0 0 0 0.014417 2 35621 35519;35621 69.105 16.141 1 2531600 59679 3096 39904 40798 69459;69460 69460 0.012100613150096251 SNGDVILVY 9 Unmodified _SNGDVILVY_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2591247558594 2 490.258382 978.502212 0.19363 9.4927E-05 -0.95689 -0.00046912 -0.76326 -0.00037419 490.25895374907896 63.783 0.31716 63.783 63.612 63.93 0 30 12 3 0 0 0 0.05447 1 35571 35571 43.858 18.459 1 1639500 59680 3096 39904 40798 69461 69461 0.012100613150096251 SNGFNQWTHY 10 Unmodified _SNGFNQWTHY_ 0 0 0 REV__ENSG00000165338|ENST00000298068|HECTD2 REV__ENSG00000165338|ENST00000298068|HECTD2 MSMS AL20221201_MKP_PDAC_01 4 627.2703247070312 2 627.270344 1252.52613 NaN NaN NaN NaN NaN NaN NaN 18.798 1 16.176 15.676 16.676 -2.6215 0 0 0 0.98312 1 9921 9921 2.4985 0 1 + 59681 22005 39905 40799 69462 69462 -0.09002705198622607 SNHGLALAI 9 Unmodified _SNHGLALAI_ 0 0 0 REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2539672851562 2 448.253434 894.492316 0.26749 0.00011991 0.29706 0.00013316 0.56455 0.00025306 448.253570983062 43.353 0.2194 43.353 43.242 43.461 0 22 10 3 0 0 0 0.011968 1 23537 23537 74.929 9.694 1 5053400 + 59682 23032 39906 40800 69463 69463 0.04084918100261348 SNHLIDLDKL 10 Unmodified _SNHLIDLDKL_ 0 0 0 REV__ENSG00000031691|ENST00000335783|CENPQ REV__ENSG00000031691|ENST00000335783|CENPQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3230590820312 2 584.322045 1166.62954 0.27079 0.00015823 0.3398 0.00019855 0.61059 0.00035678 584.3231769274676 56.428 0.24451 56.359 56.194 56.438 -0.068737 22 9 3 0 0 0 0.10406 2 30671 30671;30716 45.74 1.3332 1 9012100 + 59683 17147 39907 40801 69464;69465 69464 0.052887821891772546 SNKRHKKKRKK 11 Unmodified _SNKRHKKKRKK_ 0 0 0 REV__ENSG00000138398|ENST00000260970|PPIG REV__ENSG00000138398|ENST00000260970|PPIG MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1524047851562 4 360.236385 1436.91643 0.049601 1.7868E-05 -0.57036 -0.00020546 -0.52076 -0.0001876 360.4863119244405 62.695 0.45673 62.695 62.506 62.963 0 28 19 2 0 0 0 0.30605 1 35018 35018 0 0 1 774290 + 59684 20329 39908 40802 69466 69466 0.21545100921844096 SNKVELVYEM 10 Unmodified _SNKVELVYEM_ 0 0 0 REV__ENSG00000153495|ENST00000283547|TEX29 REV__ENSG00000153495|ENST00000283547|TEX29 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8603820800781 3 404.537401 1210.59037 -0.14684 -5.9402E-05 -0.63745 -0.00025787 -0.78429 -0.00031727 404.5372826201071 22.052 0.30773 22.075 21.918 22.226 0.022896 13 13 2 0 0 0 0.24005 1 11161 11161 0.77653 0 1 405980 + 59685 21175 39909 40803 69467 69467 -0.0064968615672569285 SNKWLHERGQ 10 Unmodified _SNKWLHERGQ_ 0 0 0 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.8206176757812 2 627.820535 1253.62652 -0.28645 -0.00017984 -1.2546 -0.00078766 -1.5411 -0.0009675 627.8197712229329 20.683 0.19346 20.683 20.576 20.77 0 39 12 4 0 0 0 0.71276 1 10391 10391 1.4819 1.4819 1 6425900 59686 3668 39910 40804 69468 69468 0.009849518550254288 SNLAFIDIF 9 Unmodified _SNLAFIDIF_ 0 0 0 ENSG00000172154|ENST00000302124|OR8I2 ENSG00000172154|ENST00000302124|OR8I2 ENSG00000172154|ENST00000302124|OR8I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2761840820312 2 520.276575 1038.5386 2.709 0.0014095 -1.0361 -0.00053906 1.6729 0.00087039 520.2756397922084 99.847 0.23898 99.811 99.695 99.934 -0.036308 24 8 5 0 0 0 0.013323 1 55464 55464 71.134 0 1 26485000 59687 8185 39911 40805 69469 69469 0.020869382117098212 SNLENDRDERD 11 Unmodified _SNLENDRDERD_ 0 0 0 ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8677673339844 3 454.867526 1361.58075 NaN NaN NaN NaN NaN NaN NaN 5.6534 1 5.6534 5.1534 6.1534 0 0 0 0 0.9435 1 2716 2716 0 0 1 59688 6619 39912 40806 69470 69470 -0.08557782908519584 SNLENDRDERD 11 Unmodified _SNLENDRDERD_ 0 0 0 ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 ENSG00000158966|ENST00000651257|CACHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8673706054688 3 454.867526 1361.58075 NaN NaN NaN NaN NaN NaN NaN 9.4244 1 9.442 8.942 9.942 0.017581 0 0 0 0.9435 1 4675 4675 0 0 1 59689 6619 39912 40806 69471 69471 -0.08557782908519584 SNLFLRMMLC 10 Unmodified _SNLFLRMMLC_ 0 0 0 REV__ENST00000443070.5_1_2:74000944-74001010:-|nuORF REV__ENST00000443070.5_1_2:74000944-74001010:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8723449707031 3 409.873074 1226.59739 NaN NaN NaN NaN NaN NaN NaN 18.641 1 18.664 18.164 19.164 0.023106 0 0 0 1.0019 1 9361 9361 0.15932 0.01943 1 + 59690 27107 39913 40807 69472 69472 -0.006843680814654363 SNLIFTGLVVI 11 Unmodified _SNLIFTGLVVI_ 0 0 0 ENSG00000181273|ENST00000326855|OR5AK2 ENSG00000181273|ENST00000326855|OR5AK2 ENSG00000181273|ENST00000326855|OR5AK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5737915039062 3 392.572663 1174.69616 0.35846 0.00014072 -0.029529 -1.1592E-05 0.32893 0.00012913 392.57261754811907 47.926 0.24519 47.887 47.7 47.946 -0.038643 30 11 4 0 0 0 0.60536 1 25786 25786 11.065 0 1 3163300 59691 8961 39914 40808 69473 69473 0.11580017751089144 SNLIKHKLI 9 Unmodified _SNLIKHKLI_ 0 0 0 nc|ENSG00000196268|Q6ZR52|ZNF493;ENSG00000196268|ENST00000392288|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 nc|ENSG00000196268|Q6ZR52|ZNF493 MSMS AL20221201_MKP_PDAC_01 4 533.3433837890625 2 533.342584 1064.67061 NaN NaN NaN NaN NaN NaN NaN 108.58 1 102.4 101.9 102.9 -6.1757 0 0 0 0.85852 1 72562 72562 0.45834 0 1 59692 9792 39915 40809 69474 69474 0.1408658801931324 SNLLVLHLSH 10 Unmodified _SNLLVLHLSH_ 0 0 0 ENSG00000188783|ENST00000343110|PRELP ENSG00000188783|ENST00000343110|PRELP ENSG00000188783|ENST00000343110|PRELP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7662963867188 2 566.827298 1131.64004 0.53808 0.000305 -1.8015 -0.0010212 -1.2634 -0.00071615 567.3267649497054 63.055 0.16093 63.033 62.908 63.069 -0.021614 13 7 2 0 0 0 0.23325 1 34500 34500 6.2058 0 1 975580 59693 9697 39916 40810 69475 69475 0.0794880963428568 SNLQDLVY 8 Unmodified _SNLQDLVY_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4769287109375 1 951.478188 950.470912 0.38534 0.00036664 0.23656 0.00022508 0.6219 0.00059172 951.4783907144483 66.989 0.4353 60.813 60.599 61.035 -6.1757 54 24 3 0 0 0 0.19688 1 43741 43741 71.134 8.5609 1 48792000 59694 4861 39917 40811 69476 69476 -0.00630511719111837 SNLSLISYF 9 Unmodified _SNLSLISYF_ 0 0 0 REV__ENSG00000173838|ENST00000311269|MARCHF10 REV__ENSG00000173838|ENST00000311269|MARCHF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1044.402587890625 1 1043.54079 1042.53351 0.75088 0.00078357 0.62482 0.00065202 1.3757 0.0014356 1043.5407114839545 78.603 0.26141 78.655 78.49 78.752 0.052452 20 10 3 0 0 0 0.40476 1 43347 43347 12.241 0.60036 1 4276000 + 59695 22754 39918 40812 69477 69477 0.013946343490943036 SNLSLISYF 9 Unmodified _SNLSLISYF_ 0 0 0 REV__ENSG00000173838|ENST00000311269|MARCHF10 REV__ENSG00000173838|ENST00000311269|MARCHF10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1043.54079 1042.53351 0.37551 0.00039186 0.50119 0.00052301 0.8767 0.00091487 1043.5411259018622 79.113 0.3389 78.627 78.485 78.824 -0.48596 -0.014401 -5.1813E-05 NaN 12.241 30 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1570100 + 59696 22754 39918 40812 0.013946343490943036 SNLSLISYF 9 Unmodified _SNLSLISYF_ 0 0 0 REV__ENSG00000173838|ENST00000311269|MARCHF10 REV__ENSG00000173838|ENST00000311269|MARCHF10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1043.54079 1042.53351 0.75088 0.00078357 0.62482 0.00065202 1.3757 0.0014356 1043.5407114839545 78.603 0.26141 78.655 78.49 78.752 0.052452 0.014401 7.7201E-05 NaN 12.241 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4276000 + 59697 22754 39918 40812 0.013946343490943036 SNLVPVEIFF 10 Unmodified _SNLVPVEIFF_ 0 0 0 REV__ENST00000332582.4_1_X:53108273-53108501:+|nuORF REV__ENST00000332582.4_1_X:53108273-53108501:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8201293945312 2 582.818607 1163.62266 0.5445 0.00031734 0.50473 0.00029417 1.0492 0.00061151 582.8191270676031 82.605 0.36363 82.11 81.819 82.182 -0.4952 19 14 2 0 0 0 0.70951 1 45080 45080 1.8442 0 1 477810 + 59698 25613 39919 40813 69478 69478 0.04739469308628941 SNNFDEEDDM 10 Unmodified _SNNFDEEDDM_ 0 0 0 REV__nc|ENSG00000169744|O43679-3|LDB2 REV__nc|ENSG00000169744|O43679-3|LDB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.2086791992188 2 608.208957 1214.40336 NaN NaN NaN NaN NaN NaN NaN 1.8039 1 1.7869 1.2869 2.2869 -0.017019 0 0 0 1.0061 1 925 925 0 0 1 + 59699 22422 39920 40814 69479 69479 -0.19526374502879662 SNNRQLPEDW 10 Unmodified _SNNRQLPEDW_ 0 0 0 REV__ENST00000468472.1_1_3:52869306-52869456:-|nuORF REV__ENST00000468472.1_1_3:52869306-52869456:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.7940063476562 2 629.794183 1257.57381 NaN NaN NaN NaN NaN NaN NaN 57.806 1 57.316 56.816 57.816 -0.48974 0 0 0 0.97302 1 31419 31419 3.5965 0.31518 1 + 59700 27453 39921 40815 69480 69480 -0.04467050998414379 SNPALYLLI 9 Unmodified _SNPALYLLI_ 0 0 0 REV__ENSG00000181291|ENST00000631683|TMEM132E REV__ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2956848144531 2 502.294768 1002.57498 0.91794 0.00046108 0.59895 0.00030085 1.5169 0.00076193 502.29499605510694 90.23 0.85937 84.055 83.615 84.474 -6.1757 159 49 4 0 0 0 0.03568 1 59388 59388 52.268 0 1 64810000 + 59701 23199 39922 40816 69481 69481 0.07379815108436105 SNPFHLLHLEE 11 Unmodified _SNPFHLLHLEE_ 0 0 0 REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2 REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2 MSMS AL20221201_MKP_PDAC_01 4 445.8963623046875 3 445.894577 1334.6619 NaN NaN NaN NaN NaN NaN NaN 23.287 1 20.509 20.009 21.009 -2.7784 0 0 0 0.94184 1 12596 12596 0.40827 0 1 + 59702 29981 39923 40817 69482 69482 0.007955695921964434 SNPGYQQNGY 10 Unmodified _SNPGYQQNGY_ 0 0 0 REV__ENST00000478357.1_1_10:81056128-81056470:+|nuORF REV__ENST00000478357.1_1_10:81056128-81056470:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2420654296875 2 564.241252 1126.46795 NaN NaN NaN NaN NaN NaN NaN 57.163 1 57.163 56.663 57.663 0 0 0 0 0.95966 1 31806 31806 5.2969 0.39987 1 + 59703 27632 39924 40818 69483 69483 -0.09022386843889763 SNPLILMRL 9 Unmodified _SNPLILMRL_ 0 0 0 ENSG00000169071|ENST00000375708|ROR2 ENSG00000169071|ENST00000375708|ROR2 ENSG00000169071|ENST00000375708|ROR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.879638671875 3 352.879322 1055.61614 NaN NaN NaN NaN NaN NaN NaN 43.759 1 43.744 43.244 44.244 -0.015667 0 0 0 0.84737 1 23459 23459 0.96228 0 1 59704 7830 39925 40819 69484 69484 0.09055252876260056 SNPLTELLYY 10 Unmodified _SNPLTELLYY_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8102416992188 2 606.810979 1211.6074 -0.032479 -1.9708E-05 -0.65799 -0.00039927 -0.69047 -0.00041898 606.8108115155144 77.146 0.42597 70.971 70.759 71.185 -6.1757 56 24 3 0 0 0 0.28721 2 50540 50406;50540 39.95 12.321 1 29829000 + 59705 21094 39926 40820 69485;69486 69486 0.010065577207797105 SNPNLYWYR 9 Unmodified _SNPNLYWYR_ 0 0 0 nc|ENSG00000237254|A0A0K0K1B3|TRBV30 nc|ENSG00000237254|A0A0K0K1B3|TRBV30 nc|ENSG00000237254|A0A0K0K1B3|TRBV30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7930908203125 2 606.793455 1211.57236 -0.077011 -4.673E-05 0.010703 6.4945E-06 -0.066308 -4.0235E-05 606.7932068793915 94.672 0.25524 94.672 94.547 94.802 0 40 22 3 0 0 0 0.59812 1 52307 52307 1.4819 0 1 504550 59706 16563 39927 40821 69487 69487 -0.024966402965674206 SNPPAEYF 8 Unmodified _SNPPAEYF_ 0 0 0 ENSG00000183668|ENST00000270077|PSG9;ENSG00000204941|ENST00000342951|PSG5;nc|ENSG00000183668|Q00887-2|PSG9 ENSG00000183668|ENST00000270077|PSG9;ENSG00000204941|ENST00000342951|PSG5;nc|ENSG00000183668|Q00887-2|PSG9 ENSG00000204941|ENST00000342951|PSG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7090759277344 2 462.708525 923.402498 0.9916 0.00045882 -0.61941 -0.00028661 0.37219 0.00017221 462.7082755436995 49.786 0.31776 49.786 49.629 49.946 0 37 14 4 0 0 0 0.64853 1 27383 27383 21.747 3.6117 1 6764300 59707 9175;10337;16449 39928 40822 69488 69488 -0.06226756298951841 SNQAPSSFTCK 11 Unmodified _SNQAPSSFTCK_ 0 0 0 REV__nc|ENSG00000196166|Q6ZUL3-2|LINC03042 REV__nc|ENSG00000196166|Q6ZUL3-2|LINC03042 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2653198242188 2 585.266413 1168.51827 NaN NaN NaN NaN NaN NaN NaN 74.24 1 74.24 73.74 74.74 0 0 0 0 0.9423 1 41315 41315 0.86438 0.070743 1 + 59708 29876 39929 40823 69489 69489 -0.059246005104114374 SNQFRDFF 8 Unmodified _SNQFRDFF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.1669006347656 3 354.166408 1059.47739 1.3528 0.00047912 -0.046349 -1.6415E-05 1.3065 0.0004627 354.1664273531045 28.522 0.65867 25.374 24.896 25.555 -3.1482 51 34 2 0 0 0 0.80505 1 15675 15675 3.5965 0 1 6336000 59709 2052 39930 40824 69490 69490 -0.04996573767721202 SNQKYREMYEE 11 Unmodified _SNQKYREMYEE_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS AL20221201_MKP_PDAC_01 4 492.8834533691406 3 492.885641 1475.63509 NaN NaN NaN NaN NaN NaN NaN 18.993 1 16.372 15.872 16.872 -2.6215 0 0 0 0.93777 1 10034 10034 4.1166 1.6818 1 59710 640 39931 40825 69491 69491 -0.08369907081305428 SNRGRLAQL 9 Unmodified _SNRGRLAQL_ 0 0 0 REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7951965332031 2 507.793789 1013.57303 0.43337 0.00022006 -1.9181 -0.00097402 -1.4848 -0.00075396 507.7948541248242 75.218 0.43034 74.741 74.538 74.968 -0.47714 92 21 6 0 0 0 0.1773 1 41203 41203 25.399 2.663 1 76958000 + 59711 28020 39932 40826 69492 69492 0.06678199143175334 SNRKDEQWQ 9 Unmodified _SNRKDEQWQ_ 0 0 0 REV__ENSG00000197385|ENST00000360311|ZNF860 REV__ENSG00000197385|ENST00000360311|ZNF860 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.5242919921875 3 397.523143 1189.5476 NaN NaN NaN NaN NaN NaN NaN 17.676 1 17.69 17.19 18.19 0.013865 0 0 0 0.85852 1 8808 8808 0.20686 0 1 + 59712 23921 39933 40827 69493 69493 -0.039593201699062774 SNRPSFSC 8 Unmodified _SNRPSFSC_ 0 0 0 REV__ENSG00000105085|ENST00000263390|MED26 REV__ENSG00000105085|ENST00000263390|MED26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.1971740722656 2 449.197802 896.381051 -0.44272 -0.00019887 1.322 0.00059383 0.87925 0.00039496 449.1984328543386 55.484 0.30546 55.484 55.305 55.611 0 31 13 3 0 0 0 0.80311 1 30774 30774 4.756 0 1 4807300 + 59713 18398 39934 40828 69494 69494 -0.07128464599304607 SNRPSFSC 8 Unmodified _SNRPSFSC_ 0 0 0 REV__ENSG00000105085|ENST00000263390|MED26 REV__ENSG00000105085|ENST00000263390|MED26 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 449.197802 896.381051 -0.39718 -0.00017841 0.30227 0.00013578 -0.094913 -4.2635E-05 449.197889783994 55.976 0.079941 55.498 55.44 55.52 -0.47798 0.0068824 -0.00080777 NaN 4.756 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 648420 + 59714 18398 39934 40828 -0.07128464599304607 SNRSFTCAL 9 Unmodified _SNRSFTCAL_ 0 0 0 REV__ENST00000264170.8_1_2:143635223-143635250:+|nuORF REV__ENST00000264170.8_1_2:143635223-143635250:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7806701660156 2 499.739834 997.465115 0.22534 0.00011261 1.5099 0.00075456 1.7352 0.00086717 499.7407619559931 48.443 0.15935 48.072 48.002 48.162 -0.37172 9 7 2 0 0 0 0.20727 1 26003 26003 7.9102 0 1 1169800 + 59715 25061 39935 40829 69495 69495 -0.03371933502410229 SNRSHIVKL 9 Unmodified _SNRSHIVKL_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF;ENST00000566831.5_1_15:72542421-72543610:-|nuORF;nc|ENSG00000137817|Q2NL67-2|PARP6;ENSG00000137817|ENST00000569795|PARP6 nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.876953125 3 351.876969 1052.60908 1.8126 0.00063782 0.49686 0.00017483 2.3095 0.00081265 351.8770579923256 19.862 0.36048 17.206 17.076 17.436 -2.6564 34 21 2 0 0 0 0.34748 1 10579 10579 14.957 0.11889 1 3346300 59716 6153 39936 40830 69496 69496 0.08487656320039605 SNRTYVKMTRM 11 Unmodified _SNRTYVKMTRM_ 0 0 0 REV__ENSG00000257138|ENST00000547270|TAS2R38 REV__ENSG00000257138|ENST00000547270|TAS2R38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2395935058594 3 462.904201 1385.69077 0.46353 0.00021457 1.9226 0.00088998 2.3861 0.0011045 463.23963817587827 28.983 0.089373 28.921 28.876 28.966 -0.062159 5 3 2 0 0 0 0.7326 1 14993 14993 0.40827 0 1 1915700 + 59717 24562 39937 40831 69497 69497 0.013356476252965876 SNRYQYTRME 10 Unmodified _SNRYQYTRME_ 0 0 0 REV__ENST00000510461.5_1_5:131066679-131080342:-|nuORF REV__ENST00000510461.5_1_5:131066679-131080342:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.8748474121094 3 449.875188 1346.60373 -0.28105 -0.00012644 -0.28692 -0.00012908 -0.56797 -0.00025552 449.8751042539471 16.741 0.11879 16.741 16.695 16.814 0 45 29 2 0 0 0 0.24011 1 8172 8172 0.15932 0 1 897020 + 59718 28145 39938 40832 69498 69498 -0.05570435324762002 SNSMAQKRNY 10 Unmodified _SNSMAQKRNY_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7848510742188 2 599.785304 1197.55605 0.14618 8.7678E-05 -1.6563 -0.00099343 -1.5101 -0.00090575 599.7842791216776 31.69 0.22053 31.56 31.454 31.675 -0.12915 25 8 4 0 0 0 0.32072 1 16465 16465 26.268 8.1218 1 9453000 59719 8162 39939 40833 69499 69499 -0.03482089524914045 SNWQRWYL 8 Unmodified _SNWQRWYL_ 0 0 0 REV__ENST00000416538.5_1_2:136511720-136511816:+|nuORF REV__ENST00000416538.5_1_2:136511720-136511816:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.1263427734375 2 576.78289 1151.55123 0.34397 0.0001984 -1.1387 -0.00065675 -0.79468 -0.00045836 576.7823402743634 82.366 0.20228 82.366 82.207 82.41 0 12 8 2 0 0 0 8.7369 1 45684 45684 0.79363 0 1 260100 + 59720 26773 39940 40834 69500 69500 -0.0184860560539164 SNWWSFFQFV 10 Unmodified _SNWWSFFQFV_ 0 0 0 REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25 REV__nc|ENSG00000059769|Q9H1X3-2|DNAJC25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.8748474121094 3 449.876746 1346.60841 NaN NaN NaN NaN NaN NaN NaN 16.71 1 16.71 16.21 17.21 0 0 0 0 0.9997 1 8172 8172 0.69767 0.19171 1 + 59721 17321 39941 40835 69501 69501 -0.051031831196951316 SNYNAWSHRIW 11 Unmodified _SNYNAWSHRIW_ 0 0 0 ENSG00000188647|ENST00000340434|PTAR1;ENST00000467511.1_1_9:72346973-72349163:-|nuORF ENSG00000188647|ENST00000340434|PTAR1 ENSG00000188647|ENST00000340434|PTAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2286071777344 3 478.56182 1432.66363 0.26044 0.00012464 3.1319 0.0014988 3.3924 0.0016235 478.5633183052724 88.653 0.1171 88.653 88.621 88.738 0 8 5 2 0 0 0 0.74244 1 49093 49093 0.073264 0 1 258370 59722 9680 39942 40836 69502 69502 -0.03539376599201205 SNYQMFPRIF 10 Unmodified _SNYQMFPRIF_ 0 0 0 REV__nc|ENSG00000136720|O60243-2|HS6ST1 REV__nc|ENSG00000136720|O60243-2|HS6ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8823547363281 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 46.531 1 46.498 45.998 46.998 -0.033417 0 0 0 0.99091 1 25037 25037 0.69767 0 1 + 59723 20177 39943 40837 69503 69503 -0.016068539630396117 SNYQMFPRIF 10 Unmodified _SNYQMFPRIF_ 0 0 0 REV__nc|ENSG00000136720|O60243-2|HS6ST1 REV__nc|ENSG00000136720|O60243-2|HS6ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8828430175781 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 49.157 1 49.113 48.613 49.613 -0.04369 0 0 0 0.99091 1 26551 26551 0.69767 0.24315 1 + 59724 20177 39943 40837 69504 69504 -0.016068539630396117 SPAATRGPSL 10 Unmodified _SPAATRGPSL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7618103027344 2 478.761623 955.508694 -0.31156 -0.00014916 -0.57533 -0.00027544 -0.88689 -0.00042461 478.76143286358473 26.115 0.22243 26.115 26.006 26.228 0 20 12 2 0 0 0 0.078417 1 13402 13402 51.488 12.873 1 2850000 59725 16188 39944 40838 69505 69505 0.029159992663721823 SPADDLGQTY 10 Unmodified _SPADDLGQTY_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131;ENST00000485245.2_1_2:98373564-98375685:-|nuORF ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7379760742188 2 533.738011 1065.46147 0.324 0.00017293 -0.085392 -4.5577E-05 0.23861 0.00012735 533.7379417069684 37.211 0.33172 37.211 37.037 37.369 0 43 16 3 0 0 0 0.0073675 2 19834 19734;19834 92.491 54.316 1 25711000 59726 1161 39945 40839 69506;69507 69507 -0.0686432479526502 SPADDLGQTY 10 Unmodified _SPADDLGQTY_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131;ENST00000485245.2_1_2:98373564-98375685:-|nuORF ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7389526367188 2 533.738011 1065.46147 0.51136 0.00027293 0.45342 0.00024201 0.96478 0.00051494 533.7382116922294 44.273 0.41562 39.421 39.232 39.648 -4.852 67 29 3 0 0 0 0.041224 1 27016 27016 62.573 43.316 1 35918000 59727 1161 39945 40839 69508 69508 -0.0686432479526502 SPADHRGYASL 11 Unmodified _SPADHRGYASL_ 0 0 0 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 ENSG00000124766|ENST00000244745|SOX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2863159179688 2 587.285994 1172.55744 -0.3819 -0.00022429 0.48805 0.00028662 0.10614 6.2336E-05 587.2867545662281 24.771 0.18315 24.771 24.66 24.844 0 14 8 2 0 0 0 0.29431 1 12675 12675 27.088 11.241 1 952530 59728 3814 39946 40840 69509 69509 -0.021941321645272183 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4883422851562 1 946.488024 945.480748 -0.32785 -0.00031031 1.2016 0.0011373 0.87373 0.00082697 946.4894586087581 81.601 0.38483 81.601 81.416 81.801 0 33 19 2 0 0 0 0.0082485 2 45335 45237;45335 96.285 49.364 1 1294000 59729 7640 39947 40841 69510;69511 69511 0.005826762862966461 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7475891113281 2 473.74765 945.480748 0.2562 0.00012137 0.22037 0.0001044 0.47657 0.00022577 473.74763695010876 81.625 0.32005 81.625 81.439 81.759 0 30 16 2 0 0 0 0.1773 1 45252 45252 25.399 4.9457 1 921730 59730 7640 39947 40841 69512 69512 0.005826762862966461 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.4887084960938 1 946.488024 945.480748 0.58141 0.0005503 0.15613 0.00014778 0.73754 0.00069808 946.4877334114307 82.133 0.29631 81.637 81.471 81.767 -0.49521 18 11 2 0 0 0 0.05447 1 44933 44933 43.858 5.7071 1 629120 59731 7640 39947 40841 69513 69513 0.005826762862966461 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7481079101562 2 473.74765 945.480748 0.76383 0.00036186 0.21795 0.00010325 0.98178 0.00046512 473.74759850602396 82.076 0.29861 81.581 81.443 81.742 -0.4952 17 11 2 0 0 0 0.23158 1 44951 44951 20.454 4.6064 1 600010 59732 7640 39947 40841 69514 69514 0.005826762862966461 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MSMS AL20221201_MKP_PDAC_01 4 473.7481994628906 2 473.74765 945.480748 NaN NaN NaN NaN NaN NaN NaN 89.06 1 82.884 82.384 83.384 -6.1757 0 0 0 0.025979 1 58779 58779 71.134 22.788 1 59733 7640 39947 40841 69515 69515 0.005826762862966461 SPADPLLSF 9 Unmodified _SPADPLLSF_ 0 0 0 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 ENSG00000167617|ENST00000301200|CDC42EP5 MSMS AL20221201_MKP_PDAC_01 4 473.7481079101562 2 473.74765 945.480748 NaN NaN NaN NaN NaN NaN NaN 89.254 1 83.078 82.578 83.578 -6.1757 0 0 0 0.14 1 58912 58912 37.974 5.6685 1 59734 7640 39947 40841 69516 69516 0.005826762862966461 SPADPTRTF 9 Unmodified _SPADPTRTF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.245849609375 2 496.245806 990.47706 -0.32018 -0.00015889 -0.16386 -8.1316E-05 -0.48405 -0.00024021 496.24568985835907 29.644 0.17458 29.644 29.567 29.742 0 16 10 3 0 0 0 0.091924 1 15364 15364 34.932 16.786 1 1683000 59735 10887 39948 40842 69517 69517 -0.018559934875725048 SPADPTRTF 9 Unmodified _SPADPTRTF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MSMS AL20221201_MKP_PDAC_01 4 496.2485656738281 2 496.245806 990.47706 NaN NaN NaN NaN NaN NaN NaN 34.009 1 30.023 29.523 30.523 -3.9853 0 0 0 0.076083 1 19559 19559 49.554 20.473 1 59736 10887 39948 40842 69518 69518 -0.018559934875725048 SPAEFVTRF 9 Unmodified _SPAEFVTRF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ENST00000546328.1_1_12:109577795-109604957:+|nuORF;nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2706298828125 2 527.271824 1052.5291 -0.42691 -0.0002251 -1.7188 -0.00090626 -2.1457 -0.0011314 527.27131479057 55.986 0.32117 55.508 55.34 55.661 -0.47798 36 15 3 0 0 0 0.011291 2 30435 30324;30435 76.825 27.27 1 10748000 59737 10934;1188 39949 40843 69519;69520 69520 0.0049316992619878874 SPAEFVTRF 9 Unmodified _SPAEFVTRF_ 0 0 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA;ENST00000546328.1_1_12:109577795-109604957:+|nuORF;nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000278540|Q13085-3|ACACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2719116210938 2 527.271824 1052.5291 NaN NaN NaN NaN NaN NaN NaN 55.584 1 55.516 55.016 56.016 -0.068737 0 0 0 0.021306 1 30212 30212 76.825 32.966 1 59738 10934;1188 39949 40843 69521 69521 0.0049316992619878874 SPAEHPSND 9 Unmodified _SPAEHPSND_ 0 0 0 REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF REV__ENST00000492568.1_1_1:230398906-230399248:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7416076660156 2 477.201596 952.388638 -0.45277 -0.00021606 -1.0149 -0.00048431 -1.4677 -0.00070037 477.2008346868192 48.707 0.27411 48.707 48.6 48.874 0 20 12 2 0 0 0 0.20139 1 26750 26750 10.824 4.4698 1 2126900 + 59739 27904 39950 40844 69522 69522 -0.08946033798042663 SPAEKAGLL 9 Unmodified _SPAEKAGLL_ 0 0 0 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2555541992188 2 443.255643 884.496732 -0.27877 -0.00012357 -0.35178 -0.00015593 -0.63055 -0.0002795 443.2554888539805 33.642 0.23898 33.642 33.565 33.804 0 32 15 3 0 0 0 0.01958 1 17645 17645 63.961 7.7835 1 9609700 59740 2624 39951 40845 69523 69523 0.04986382523202337 SPAEKAGLL 9 Unmodified _SPAEKAGLL_ 0 0 0 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2548828125 2 443.255643 884.496732 1.3131 0.00058205 -0.64164 -0.00028441 0.67148 0.00029764 443.25533680286713 37.747 0.43136 33.378 33.185 33.616 -4.3689 48 25 3 0 0 0 0.024189 2 22113 22113;22231 59.368 11.62 1 17933000 59741 2624 39951 40845 69524;69525 69524 0.04986382523202337 SPAELPTPP 9 Unmodified _SPAELPTPP_ 0 0 0 ENSG00000145743|ENST00000542267|FBXL17 ENSG00000145743|ENST00000542267|FBXL17 ENSG00000145743|ENST00000542267|FBXL17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7384948730469 2 454.739825 907.465098 NaN NaN NaN NaN NaN NaN NaN 54.184 1 54.184 53.684 54.684 0 0 0 0 0.53226 1 30068 30068 14.838 0 1 59742 5723 39952 40846 69526 69526 0.007663897692168575 SPAEPAPTI 9 Unmodified _SPAEPAPTI_ 0 0 0 ENSG00000166317|ENST00000394810|SYNPO2L ENSG00000166317|ENST00000394810|SYNPO2L ENSG00000166317|ENST00000394810|SYNPO2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7326354980469 2 441.732 881.449448 0.64395 0.00028445 0.0033199 1.4665E-06 0.64727 0.00028592 441.73209072625303 42.382 0.3667 42.382 42.238 42.605 0 37 17 3 0 0 0 0.016184 1 22956 22956 67.344 6.9543 1 6017900 59743 7469 39953 40847 69527 69527 0.003981032521778616 SPAERRQLL 9 Unmodified _SPAERRQLL_ 0 0 0 nc|ENSG00000025708|P19971-2|TYMP;ENSG00000025708|ENST00000252029|TYMP nc|ENSG00000025708|P19971-2|TYMP nc|ENSG00000025708|P19971-2|TYMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.2086486816406 3 357.208607 1068.60399 -0.2979 -0.00010641 0.60259 0.00021525 0.30469 0.00010884 357.2088430581225 23.408 0.22543 23.408 23.264 23.489 0 25 10 3 0 0 0 0.34999 1 11926 11926 14.405 6.2499 1 2129700 59744 556 39954 40848 69528 69528 0.07243352457408037 SPAERRQLL 9 Unmodified _SPAERRQLL_ 0 0 0 nc|ENSG00000025708|P19971-2|TYMP;ENSG00000025708|ENST00000252029|TYMP nc|ENSG00000025708|P19971-2|TYMP nc|ENSG00000025708|P19971-2|TYMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2092590332031 3 357.208607 1068.60399 0.53784 0.00019212 -0.069885 -2.4963E-05 0.46796 0.00016716 357.20867628475986 25.731 0.36461 22.779 22.576 22.941 -2.9511 45 22 3 0 0 0 0.024882 2 14056 14056;14172 45.74 27.019 1 22652000 59745 556 39954 40848 69529;69530 69529 0.07243352457408037 SPAEVAEQY 9 Unmodified _SPAEVAEQY_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2297058105469 2 497.229822 992.445091 -0.95938 -0.00047703 0.18094 8.9971E-05 -0.77844 -0.00038706 497.22971512526453 32.628 0.16714 32.628 32.546 32.714 0 15 8 2 0 0 0 0.016184 1 17060 17060 67.344 46.89 1 1781200 59746 5828 39955 40849 69531 69531 -0.05143405961382541 SPAFSTRVL 9 Unmodified _SPAFSTRVL_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF;SND1|p.L780I|1|0.14|ENSG00000197157|chr7:128086971-128086971|C/A|missense_variant ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2745971679688 2 489.274367 976.53418 0.80553 0.00039412 0.16681 8.1616E-05 0.97234 0.00047574 489.27440584337694 47.421 0.26373 47.069 46.959 47.223 -0.3526 20 12 2 0 0 0 0.01958 1 25428 25428 63.961 27.833 1 5613500 59747 9918 39956 40850 69532 69532 0.044974737888196614 SPAFSTRVL 9 Unmodified _SPAFSTRVL_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF;SND1|p.L780I|1|0.14|ENSG00000197157|chr7:128086971-128086971|C/A|missense_variant ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2749633789062 2 489.274367 976.53418 1.2303 0.00060198 0.41529 0.00020319 1.6456 0.00080517 489.2748998287471 47.148 0.52636 47.114 46.956 47.482 -0.033417 49 25 3 0 0 0 0.011291 1 25369 25369 76.825 18.146 1 10823000 59748 9918 39956 40850 69533 69533 0.044974737888196614 SPAFSTRVL 9 Unmodified _SPAFSTRVL_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000489417.5_1_7:127726971-127732107:+|nuORF;SND1|p.L780I|1|0.14|ENSG00000197157|chr7:128086971-128086971|C/A|missense_variant ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7763671875 2 489.274367 976.53418 1.014 0.00049615 -0.15488 -7.5778E-05 0.85916 0.00042037 489.2742357615339 52.767 0.39487 47.033 46.874 47.269 -5.7345 37 21 2 0 0 0 0.0085386 3 33406 33244;33290;33406 100.09 50.158 1 52499000 59749 9918 39956 40850 69534;69535;69536 69536 0.044974737888196614 SPAGILVDAM 10 Oxidation (M) _SPAGILVDAM(Oxidation (M))_ SPAGILVDAM(1) SPAGILVDAM(59) 0 0 1 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A nc|ENSG00000126561|P42229-2|STAT5A nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2513732910156 2 495.252243 988.489932 0.76801 0.00038036 -3.5192 -0.0017429 -2.7512 -0.0013625 495.2491199586624 51.307 0.366 51.307 51.109 51.475 0 27 16 3 0 0 0 0.04925 1 28371 28371 58.679 30.192 1 1579600 59750 3956 39957 40851 69537 69537 707 -0.004772984196847574 SPAGKLVAY 9 Unmodified _SPAGKLVAY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2585144042969 2 453.258185 904.501818 -0.24597 -0.00011149 1.205 0.00054617 0.95901 0.00043468 453.25881914192837 34.515 0.3305 34.515 34.384 34.714 0 43 16 3 0 0 0 0.017075 1 18167 18167 66.457 40.189 1 4336900 59751 8400 39958 40852 69538 69538 0.045746863857857534 SPAGKLVAY 9 Unmodified _SPAGKLVAY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2588806152344 2 453.258185 904.501818 0.87192 0.0003952 0.57511 0.00026068 1.447 0.00065588 453.25866389671285 39.009 0.35605 34.558 34.348 34.704 -4.4509 39 22 2 0 0 0 0.01958 1 23050 23050 63.961 36.332 1 18923000 59752 8400 39958 40852 69539 69539 0.045746863857857534 SPAGKLVAY 9 Unmodified _SPAGKLVAY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 453.258185 904.501818 -0.3567 -0.00016168 0.61153 0.00027718 0.25483 0.0001155 453.25888839977245 34.405 0.14561 34.214 34.104 34.25 -0.19131 -0.21488 -0.00030313 NaN 66.457 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2274500 59753 8400 39958 40852 0.045746863857857534 SPAGLKAVL 9 Unmodified _SPAGLKAVL_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2688598632812 2 428.268553 854.522553 0.25762 0.00011033 0.10598 4.5389E-05 0.36361 0.00015572 428.2685096344024 46.706 0.25463 46.706 46.544 46.799 0 23 11 3 0 0 0 0.023481 1 25533 25533 60.074 22.1 1 2386700 59754 9330 39959 40853 69540 69540 0.0894727676545699 SPAGLKAVL 9 Unmodified _SPAGLKAVL_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2687377929688 2 428.268553 854.522553 0.61384 0.00026289 -0.00080599 -3.4518E-07 0.61303 0.00026254 428.2685633351901 46.826 0.25701 46.489 46.367 46.624 -0.33664 29 12 3 0 0 0 0.010301 1 25075 25075 79.596 33.575 1 5615000 59755 9330 39959 40853 69541 69541 0.0894727676545699 SPAGLKAVL 9 Unmodified _SPAGLKAVL_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MSMS AL20221201_MKP_PDAC_01 4 428.2693481445312 2 428.268553 854.522553 NaN NaN NaN NaN NaN NaN NaN 51.653 1 46.004 45.504 46.504 -5.649 0 0 0 0.011986 1 32521 32521 89.401 34.627 1 59756 9330 39959 40853 69542 69542 0.0894727676545699 SPAGLKAVL 9 Unmodified _SPAGLKAVL_ 0 0 0 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 ENSG00000185085|ENST00000330574|INTS5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 428.268553 854.522553 1.2422 0.00053201 -1.6309 -0.00069846 -0.38866 -0.00016645 428.2679605218148 46.576 0.18618 46.542 46.431 46.617 -0.033417 -0.036724 -0.0013117 NaN 79.596 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1197300 59757 9330 39959 40853 0.0894727676545699 SPAGLSREY 9 Unmodified _SPAGLSREY_ 0 0 0 ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1;ENST00000462687.1_1_1:155880190-155880552:-|nuORF ENSG00000143622|ENST00000368323|RIT1 ENSG00000143622|ENST00000368323|RIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2453308105469 2 490.245806 978.47706 -0.3768 -0.00018472 -0.16187 -7.9356E-05 -0.53867 -0.00026408 490.2454225407957 26.127 0.14875 26.127 26.026 26.175 0 10 8 2 0 0 0 0.13231 1 13430 13430 29.841 7.1043 1 1003100 59758 5536 39960 40854 69543 69543 -0.013039934875791914 SPAGRRHLQL 10 Unmodified _SPAGRRHLQL_ 0 0 0 ENST00000527306.1_1_8:42752256-42852891:+|nuORF;ENSG00000168172|ENST00000307602|HOOK3 ENST00000527306.1_1_8:42752256-42852891:+|nuORF ENST00000527306.1_1_8:42752256-42852891:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8887329101562 3 378.887868 1133.64177 1.6205 0.00061397 1.3899 0.00052661 3.0103 0.0011406 378.88844718088603 20.385 0.24962 17.693 17.571 17.82 -2.693 23 13 2 0 0 0 0.40046 1 10823 10823 21.59 2.8689 1 3080600 59759 7726 39961 40855 69544 69544 0.08029863442902752 SPAGSKLRL 9 Unmodified _SPAGSKLRL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7828369140625 2 464.782359 927.550165 0.71821 0.00033381 0.10046 4.6694E-05 0.81867 0.00038051 464.7823945695582 28.589 0.32975 25.441 25.262 25.592 -3.1482 29 16 2 0 0 0 0.0082548 1 15923 15923 96.367 28.286 1 20665000 59760 4239 39962 40856 69545 69545 0.08349180025686564 SPAGTQAVGQP 11 Unmodified _SPAGTQAVGQP_ 0 0 0 REV__nc|ENSG00000185133|Q15735-3|INPP5J REV__nc|ENSG00000185133|Q15735-3|INPP5J MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7568054199219 2 506.756538 1011.49852 -0.16594 -8.4092E-05 0.91252 0.00046243 0.74658 0.00037834 506.7565637834797 18.658 0.2874 18.658 18.463 18.75 0 69 29 3 0 0 0 0.0079227 1 9301 9301 70.332 14.829 1 2574900 + 59761 23477 39963 40857 69546 69546 -0.006766084588548438 SPAGTQAVGQP 11 Unmodified _SPAGTQAVGQP_ 0 0 0 REV__nc|ENSG00000185133|Q15735-3|INPP5J REV__nc|ENSG00000185133|Q15735-3|INPP5J MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7578735351562 2 506.756538 1011.49852 1.0549 0.00053459 -0.25076 -0.00012707 0.80416 0.00040752 506.7563540539956 20.118 0.35043 17.462 17.257 17.607 -2.6564 50 23 3 0 0 0 0.038431 1 10624 10624 53.404 5.6553 1 7486700 + 59762 23477 39963 40857 69547 69547 -0.006766084588548438 SPAGTQAVGQP 11 Unmodified _SPAGTQAVGQP_ 0 0 0 REV__nc|ENSG00000185133|Q15735-3|INPP5J REV__nc|ENSG00000185133|Q15735-3|INPP5J MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.756538 1011.49852 -0.16594 -8.4092E-05 0.91252 0.00046243 0.74658 0.00037834 506.7565637834797 18.658 0.2874 18.658 18.463 18.75 0 0 0 NaN 70.332 69 29 3 NaN NaN NaN NaN 0 NaN NaN 0 2574900 + 59763 23477 39963 40857 -0.006766084588548438 SPAGVGFSY 9 Unmodified _SPAGVGFSY_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000606782.1_1_20:44521054-44521549:+|nuORF;ENST00000485627.1_1_20:44520959-44522735:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 884.4149780273438 1 884.414859 883.407583 0.33884 0.00029968 0.1648 0.00014575 0.50365 0.00044543 884.4152812592142 49.997 0.24139 49.997 49.834 50.075 0 17 10 2 0 0 0 0.010818 1 27496 27496 78.149 47.925 1 2104700 59764 878 39964 40858 69548 69548 -0.038784524363450146 SPAHETHLFT 10 Unmodified _SPAHETHLFT_ 0 0 0 ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5216369628906 3 380.520851 1138.54072 0.7005 0.00026655 0.30715 0.00011688 1.0076 0.00038343 380.5208335927753 24.16 0.28688 21.333 21.142 21.428 -2.8273 27 15 2 0 0 0 0.66569 1 13133 13133 3.5871 0.85186 1 5432300 59765 6781 39965 40859 69549 69549 -0.023006330504813377 SPAHGETLITY 11 Unmodified _SPAHGETLITY_ 0 0 0 ENSG00000106034|ENST00000310396|CPED1;nc|ENSG00000106034|A4D0V7-2|CPED1 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2999877929688 2 594.798403 1187.58225 0.66603 0.00039616 -0.44212 -0.00026297 0.22391 0.00013318 594.7980376143482 42.523 0.29806 42.523 42.42 42.718 0 26 14 2 0 0 0 0.055321 1 23027 23027 62.573 28.171 1 10240000 59766 2394 39966 40860 69550 69550 -0.0040349708181111055 SPAHGETLITY 11 Unmodified _SPAHGETLITY_ 0 0 0 ENSG00000106034|ENST00000310396|CPED1;nc|ENSG00000106034|A4D0V7-2|CPED1 ENSG00000106034|ENST00000310396|CPED1 ENSG00000106034|ENST00000310396|CPED1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 594.7718505859375 2 594.798403 1187.58225 1.257 0.00074764 -0.91989 -0.00054715 0.33707 0.00020049 594.7984704317722 47.537 0.43441 42.303 42.165 42.599 -5.2339 33 25 2 0 0 0 0.26469 1 29616 29616 20.415 0 1 13940000 59767 2394 39966 40860 69551 69551 -0.0040349708181111055 SPAIVPDPPS 10 Unmodified _SPAIVPDPPS_ 0 0 0 ENST00000496700.5_1_14:105953006-105953180:+|nuORF ENST00000496700.5_1_14:105953006-105953180:+|nuORF ENST00000496700.5_1_14:105953006-105953180:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.9688720703125 1 979.509488 978.502212 0.64937 0.00063607 -0.044501 -4.3589E-05 0.60487 0.00059248 979.5094774911929 76.064 0.36723 69.888 69.601 69.968 -6.1757 29 19 2 0 0 0 0.33553 1 49760 49760 25.399 1.3787 1 7462900 59768 14380 39967 40861 69552 69552 0.012100613149868877 SPAKDFALL 9 Unmodified _SPAKDFALL_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2719421386719 2 481.271293 960.528032 0.42018 0.00020222 0.021418 1.0308E-05 0.4416 0.00021253 481.2712176269382 58.1 0.29368 57.611 57.43 57.724 -0.48974 34 13 3 0 0 0 0.029718 1 31552 31552 55.503 3.2344 1 4379400 59769 8634 39968 40862 69553 69553 0.04618955557270965 SPAKDFALL 9 Unmodified _SPAKDFALL_ 0 0 0 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 ENSG00000176920|ENST00000425340|FUT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2740478515625 2 481.271293 960.528032 0.88142 0.0004242 0.55212 0.00026572 1.4335 0.00068992 481.2717297440957 63.259 0.24592 57.083 56.98 57.226 -6.1757 23 13 2 0 0 0 0.024189 1 40882 40882 59.368 9.4354 1 14398000 59770 8634 39968 40862 69554 69554 0.04618955557270965 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2918090820312 2 531.292559 1060.57057 0.4535 0.00024094 -0.1725 -9.1647E-05 0.281 0.00014929 531.2924981105925 40.769 0.2455 40.466 40.356 40.601 -0.30304 28 11 3 0 0 0 0.011671 2 21552 21517;21552 75.761 62.253 1 5555300 59771 9918 39969 40863 69555;69556 69556 0.042703506855104933 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2915649414062 2 531.292559 1060.57057 0.44595 0.00023693 -0.018014 -9.5707E-06 0.42794 0.00022736 531.2921463211654 40.473 0.47974 40.478 40.337 40.817 0.0050545 43 22 3 0 0 0 0.008513 1 21550 21550 99.755 78.218 1 11366000 59772 9918 39969 40863 69557 69557 0.042703506855104933 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.5305786132812 3 354.530798 1060.57057 0.32418 0.00011493 -0.6827 -0.00024204 -0.35851 -0.0001271 354.5306734444323 40.459 0.54629 40.464 40.068 40.614 0.0050583 48 25 3 0 0 0 0.23158 1 21561 21561 24.991 16.015 1 19267000 59773 9918 39969 40863 69558 69558 0.042703506855104933 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.5311584472656 3 354.530798 1060.57057 1.3063 0.00046312 -0.051661 -1.8315E-05 1.2546 0.00044481 354.5308646757356 44.564 0.52091 39.712 39.471 39.992 -4.852 100 40 3 0 0 0 0.23158 2 27254 27130;27254 19.362 15.378 1 71540000 59774 9918 39969 40863 69559;69560 69560 0.042703506855104933 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MSMS AL20221201_MKP_PDAC_01 4 531.2908325195312 2 531.292559 1060.57057 NaN NaN NaN NaN NaN NaN NaN 44.466 1 39.614 39.114 40.114 -4.852 0 0 0 0.02218 1 27154 27154 75.761 51.551 1 59775 9918 39969 40863 69561 69561 0.042703506855104933 SPAKIHVFY 9 Unmodified _SPAKIHVFY_ 0 0 0 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 354.530798 1060.57057 0.50137 0.00017775 -0.048352 -1.7142E-05 0.45301 0.00016061 354.53073986239065 40.8 0.24429 40.497 40.318 40.563 -0.30304 0.016546 0.00029258 NaN 24.991 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6995700 59776 9918 39969 40863 0.042703506855104933 SPAKKMTL 8 Unmodified _SPAKKMTL_ 0 0 0 nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 MSMS AL20221201_MKP_PDAC_01 4 438.255859375 2 438.254588 874.494624 NaN NaN NaN NaN NaN NaN NaN 20.225 1 17.532 17.032 18.032 -2.693 0 0 0 0.46765 1 10765 10765 43.772 26.83 1 59777 920 39970 40864 69562 69562 0.05235630513743672 SPAKNPSSL 9 Unmodified _SPAKNPSSL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MSMS AL20221201_MKP_PDAC_01 4 450.7431640625 2 450.742899 899.471246 NaN NaN NaN NaN NaN NaN NaN 20.257 1 17.564 17.064 18.064 -2.693 0 0 0 0.12101 1 10784 10784 40.239 10.014 1 59778 1536 39971 40865 69563 69563 0.017489080007635494 SPAKQFNIY 9 Unmodified _SPAKQFNIY_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2794189453125 2 534.279649 1066.54475 -0.26768 -0.00014302 -0.33458 -0.00017876 -0.60226 -0.00032178 534.2794149625938 41.551 0.22443 41.248 41.112 41.337 -0.30304 29 9 4 0 0 0 0.023481 1 21973 21973 60.074 20.117 1 47763000 59779 9726 39972 40866 69564 69564 0.014134564432424668 SPAKQFNIY 9 Unmodified _SPAKQFNIY_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2798461914062 2 534.279649 1066.54475 0.072451 3.8709E-05 2.0037 0.0010705 2.0761 0.0011092 534.2808892946059 41.252 0.40738 41.25 40.931 41.338 -0.0017929 41 19 3 0 0 0 0.014417 1 22051 22051 69.105 20.759 1 9003800 59780 9726 39972 40866 69565 69565 0.014134564432424668 SPAKQFNIY 9 Unmodified _SPAKQFNIY_ 0 0 0 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.280029296875 2 534.279649 1066.54475 0.58176 0.00031082 0.35852 0.00019155 0.94028 0.00050237 534.2799075380111 46.026 0.53839 41.071 40.745 41.284 -4.9549 106 35 4 0 0 0 0.0087873 2 28380 28242;28380 103.35 55.008 1 184610000 59781 9726 39972 40866 69566;69567 69567 0.014134564432424668 SPALKRLDL 9 Unmodified _SPALKRLDL_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.8107604980469 2 506.811116 1011.60768 0.46619 0.00023627 -0.95953 -0.0004863 -0.49334 -0.00025003 506.81073081949813 39.54 0.23876 39.54 39.4 39.639 0 17 10 2 0 0 0 0.015688 1 21203 21203 67.838 25.883 1 3165600 59782 7519 39973 40867 69568 69568 0.10234022231270501 SPALKRLDL 9 Unmodified _SPALKRLDL_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.8105773925781 2 506.811116 1011.60768 -0.36097 -0.00018294 -0.27192 -0.00013781 -0.63288 -0.00032075 506.8109630308975 39.75 0.30684 39.452 39.285 39.592 -0.29716 33 14 3 0 0 0 0.021948 2 20933 20933;21048 61.602 3.8799 1 12150000 59783 7519 39973 40867 69569;69570 69569 0.10234022231270501 SPALKRLDL 9 Unmodified _SPALKRLDL_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2745666503906 2 506.811116 1011.60768 0.43155 0.00021871 -0.84625 -0.00042889 -0.4147 -0.00021018 506.8109394803287 39.385 0.22779 39.397 39.281 39.509 0.011452 15 10 2 0 0 0 0.15363 1 20992 20992 29.841 11.694 1 2160000 59784 7519 39973 40867 69571 69571 0.10234022231270501 SPALKRLDL 9 Unmodified _SPALKRLDL_ 0 0 0 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 ENSG00000166685|ENST00000299886|COG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8116149902344 2 506.811116 1011.60768 0.57566 0.00029175 0.31668 0.0001605 0.89234 0.00045225 506.81135600992116 43.732 0.44706 38.967 38.724 39.171 -4.7648 71 27 3 0 0 0 0.036857 2 26508 26508;26648 51.63 9.6743 1 41214000 59785 7519 39973 40867 69572;69573 69572 0.10234022231270501 SPANGDNNY 9 Unmodified _SPANGDNNY_ 0 0 0 REV__ENSG00000073711|ENST00000264977|PPP2R3A REV__ENSG00000073711|ENST00000264977|PPP2R3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7416076660156 2 476.193771 950.372988 -0.45818 -0.00021818 3.3046 0.0015736 2.8464 0.0013555 476.19633425270035 48.694 0.20817 48.694 48.6 48.808 0 15 9 2 0 0 0 0.19613 1 26750 26750 12.532 2.3482 1 1039000 + 59786 17540 39974 40868 69574 69574 -0.10418320315102392 SPANQRRHLL 10 Unmodified _SPANQRRHLL_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8954162597656 3 397.895022 1190.66324 -0.10805 -4.2991E-05 0.21777 8.665E-05 0.10973 4.3659E-05 397.8953432294807 16.728 0.11214 16.733 16.659 16.772 0.0050564 9 6 2 0 0 0 0.71042 1 8408 8408 1.7423 0 1 575450 59787 3358 39975 40869 69575 69575 0.07553248471594998 SPANQRRHLL 10 Unmodified _SPANQRRHLL_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8955383300781 3 397.895022 1190.66324 0.72536 0.00028862 0.26671 0.00010612 0.99207 0.00039474 397.8952892407557 18.04 0.2429 15.419 15.272 15.515 -2.6215 26 16 3 0 0 0 0.20195 1 9480 9480 33.445 3.0134 1 2388200 59788 3358 39975 40869 69576 69576 0.07553248471594998 SPAPEPWVP 9 Unmodified _SPAPEPWVP_ 0 0 0 REV__ENST00000328914.4_1_7:4804199-4804568:+|nuORF REV__ENST00000328914.4_1_7:4804199-4804568:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2469177246094 2 490.247818 978.481082 NaN NaN NaN NaN NaN NaN NaN 24.404 1 24.404 23.904 24.904 0 0 0 0 0.50124 1 12472 12472 15.847 1.0089 1 + 59789 25581 39976 40870 69577 69577 -0.00901903993860742 SPAPGRLGAM 10 Unmodified _SPAPGRLGAM_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7530822753906 2 478.752744 955.490935 0.82789 0.00039635 -0.26987 -0.0001292 0.55803 0.00026716 478.7526838470614 36.669 0.20259 32.385 32.337 32.54 -4.2835 18 11 2 0 0 0 0.10424 1 21439 21439 45.7 18.816 1 8340100 59790 1928 39977 40871 69578 69578 0.011409607398604749 SPAPLSRCLF 10 Unmodified _SPAPLSRCLF_ 0 0 0 ENST00000259006.7_2_17:61775212-61775701:-|nuORF ENST00000259006.7_2_17:61775212-61775701:-|nuORF ENST00000259006.7_2_17:61775212-61775701:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.19482421875 3 364.19531 1089.5641 0.8299 0.00030224 -1.3791 -0.00050226 -0.5492 -0.00020002 364.19488515168905 23.57 0.45492 20.743 20.46 20.915 -2.8273 37 27 2 0 0 0 0.65282 1 12709 12709 4.7159 0.83959 1 3191900 59791 11209 39978 40872 69579 69579 0.022900894624626744 SPAPPLLHV 9 Unmodified _SPAPPLLHV_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7744750976562 2 465.774003 929.533452 0.17806 8.2934E-05 0.65451 0.00030486 0.83257 0.00038779 465.77429859303936 55.097 0.26138 54.619 54.471 54.733 -0.47798 20 12 3 0 0 0 0.068777 1 29877 29877 40.449 8.3316 1 2000100 59792 6618 39979 40873 69580 69580 0.06586679139763874 SPAPPLPSVM 10 Oxidation (M) _SPAPPLPSVM(Oxidation (M))_ SPAPPLPSVM(1) SPAPPLPSVM(92) 0 0 1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 ENSG00000164144|ENST00000353617|ARFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2637939453125 2 506.26261 1010.51067 0.45808 0.00023191 -0.0091111 -4.6126E-06 0.44897 0.00022729 506.2630634703693 50.26 0.36436 49.868 49.607 49.971 -0.3923 38 17 3 0 0 0 0.0073675 2 26960 26960;27075 92.491 64.005 1 3222400 59793 7147 39980 40874 69581;69582 69581 1235 0.005832919599811248 SPAPQSTSF 9 Unmodified _SPAPQSTSF_ 0 0 0 ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2184448242188 2 461.219257 920.423961 0.38687 0.00017843 -0.10623 -4.8995E-05 0.28064 0.00012944 461.21914172107034 31.643 0.27579 31.643 31.482 31.758 0 23 13 2 0 0 0 0.16226 1 16476 16476 26.884 3.7352 1 2158500 59794 7678 39981 40875 69583 69583 -0.039433712702361845 SPAPTHNSL 9 Unmodified _SPAPTHNSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.232666015625 2 462.232699 922.450845 0.053483 2.4722E-05 -0.35135 -0.00016241 -0.29787 -0.00013768 462.23258260852475 19.494 0.26043 19.494 19.34 19.601 0 50 29 2 0 0 0 0.047788 1 9743 9743 45.7 9.5726 1 1672500 59795 7904 39982 40876 69584 69584 -0.013482626590644031 SPAPTHNSL 9 Unmodified _SPAPTHNSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2331237792969 2 462.232699 922.450845 1.1964 0.00055302 -0.60692 -0.00028054 0.58949 0.00027248 462.2323412260333 21.633 0.27808 18.898 18.775 19.054 -2.7348 25 15 2 0 0 0 0.013609 1 11581 11581 70.332 21.986 1 3269300 59796 7904 39982 40876 69585 69585 -0.013482626590644031 SPAPTITSL 9 Unmodified _SPAPTITSL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7477111816406 2 443.74765 885.480748 0.8504 0.00037736 -1.2803 -0.00056814 -0.42992 -0.00019078 443.74731099206906 54.117 0.31838 54.117 53.991 54.309 0 26 14 2 0 0 0 0.026094 2 30002 30002;30127 57.471 21.427 1 4026400 59797 1444 39983 40877 69586;69587 69586 0.033426762862859505 SPAPTITSL 9 Unmodified _SPAPTITSL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4886474609375 1 886.488024 885.480748 0.62191 0.00055131 -0.45162 -0.00040036 0.17028 0.00015095 886.4873390597958 54.143 0.27971 54.143 53.991 54.271 0 22 12 2 0 0 0 0.013323 1 30099 30099 71.134 22.788 1 4423500 59798 1444 39983 40877 69588 69588 0.033426762862859505 SPAPTITSL 9 Unmodified _SPAPTITSL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS AL20221201_MKP_PDAC_01 4 443.7479858398438 2 443.74765 885.480748 NaN NaN NaN NaN NaN NaN NaN 61.819 1 55.643 55.143 56.143 -6.1757 0 0 0 0.071041 1 39842 39842 50.855 16.753 1 59799 1444 39983 40877 69589 69589 0.033426762862859505 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.4940795898438 1 930.49311 929.485833 -0.30392 -0.0002828 0.95452 0.00088818 0.6506 0.00060538 930.4938929087123 48.707 0.3791 48.707 48.511 48.89 0 56 17 4 0 0 0 8.6179E-15 2 26786 26664;26786 181.33 80.956 1 47931000 59800 3771 39984 40878 69590;69591 69591 0.018269801488941084 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7497863769531 2 465.750193 929.485833 -0.15436 -7.1892E-05 0.9563 0.0004454 0.80195 0.00037351 465.75057428282116 48.722 0.34249 48.722 48.531 48.874 0 51 15 4 0 0 0 0.0031966 2 26693 26693;26801 125.62 58.281 1 35326000 59801 3771 39984 40878 69592;69593 69592 0.018269801488941084 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.4932250976562 1 930.49311 929.485833 0.39857 0.00037086 0.31803 0.00029593 0.7166 0.00066679 930.4933698857329 49.119 0.30592 48.747 48.597 48.903 -0.37172 33 14 3 0 0 0 0.009483 3 26358 26358;26430;26466 81.89 35.869 1 4846000 59802 3771 39984 40878 69594;69595;69596 69594 0.018269801488941084 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7503051757812 2 465.750193 929.485833 0.36961 0.00017215 0.17333 8.073E-05 0.54295 0.00025288 465.7504206967963 49.139 0.30676 48.767 48.616 48.923 -0.37172 23 14 2 0 0 0 0.0082281 1 26403 26403 92.822 50.728 1 2910200 59803 3771 39984 40878 69597 69597 0.018269801488941084 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7507629394531 2 465.750193 929.485833 0.67053 0.0003123 0.16712 7.7834E-05 0.83764 0.00039013 465.75017038744414 56.396 0.4808 50.419 50.187 50.668 -5.9769 69 27 3 0 0 0 0.0031966 3 35881 35881;36008;36149 125.62 58.281 1 154830000 59804 3771 39984 40878 69598;69599;69600 69598 0.018269801488941084 SPAPVPVTY 9 Unmodified _SPAPVPVTY_ 0 0 0 nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;ENST00000463943.1_1_20:49457191-49493142:+|nuORF;nc|ENSG00000124243|Q8TDM0-3|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 nc|ENSG00000124243|Q8TDM0-2|BCAS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 930.4931640625 1 930.49311 929.485833 0.74581 0.00069397 -0.11315 -0.00010528 0.63267 0.00058869 930.492841083227 56.437 0.49975 50.46 50.187 50.687 -5.9769 78 28 4 0 0 0 6.3114999999999996E-21 3 35883 35883;36007;36147 197.17 96.796 1 150840000 59805 3771 39984 40878 69601;69602;69603 69601 0.018269801488941084 SPAQVSGASF 10 Unmodified _SPAQVSGASF_ 0 0 0 ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL ENST00000539384.5_1_12:6560901-6571312:+|nuORF ENST00000539384.5_1_12:6560901-6571312:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7325439453125 2 475.732532 949.45051 0.2832 0.00013473 -1.2744 -0.00060629 -0.99125 -0.00047157 475.73235202110004 38.026 0.20354 38.026 37.925 38.129 0 13 9 2 0 0 0 0.25982 1 20282 20282 29.841 7.1043 1 1503500 59806 5134 39985 40879 69604 69604 -0.026236823788963193 SPAQVSGASF 10 Unmodified _SPAQVSGASF_ 0 0 0 ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL ENST00000539384.5_1_12:6560901-6571312:+|nuORF ENST00000539384.5_1_12:6560901-6571312:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.7549743652344 2 475.732532 949.45051 NaN NaN NaN NaN NaN NaN NaN 44.341 1 39.489 38.989 39.989 -4.852 0 0 0 0.01428 1 27058 27058 67.838 27.888 1 59807 5134 39985 40879 69605 69605 -0.026236823788963193 SPAQYQVVL 9 Unmodified _SPAQYQVVL_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;ENST00000529179.1_1_8:144657010-144657269:-|nuORF;ENST00000464332.5_1_8:144657010-144658430:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7746276855469 2 502.7742 1003.53385 0.66805 0.00033588 -0.0010305 -5.1811E-07 0.66702 0.00033536 502.77426258607534 57.942 0.4635 57.942 57.716 58.179 0 48 18 4 0 0 0 0.024882 1 32192 32192 58.679 18.721 1 6607500 59808 5884 39986 40880 69606 69606 0.032220540689422705 SPAQYQVVL 9 Unmodified _SPAQYQVVL_ 0 0 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;ENST00000529179.1_1_8:144657010-144657269:-|nuORF;ENST00000464332.5_1_8:144657010-144658430:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.3003845214844 2 502.7742 1003.53385 0.60822 0.0003058 1.3835 0.00069559 1.9917 0.0010014 503.2763852591233 65.236 0.42044 59.061 58.884 59.304 -6.1757 44 23 4 0 0 0 0.12771 1 42256 42256 34.402 3.7652 1 27984000 59809 5884 39986 40880 69607 69607 0.032220540689422705 SPARETRSF 9 Unmodified _SPARETRSF_ 0 0 0 ENSG00000176945|ENST00000447234|MUC20;nc|ENSG00000176945|Q8N307-3|MUC20;ENST00000457750.1_1_3:195341833-195346985:+|nuORF ENSG00000176945|ENST00000447234|MUC20 ENSG00000176945|ENST00000447234|MUC20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8496398925781 3 350.849079 1049.52541 NaN NaN NaN NaN NaN NaN NaN 16.104 1 16.109 15.609 16.609 0.0050564 0 0 0 0.83812 1 8058 8058 1.7423 0.54893 1 59810 8636 39987 40881 69608 69608 0.0026250015232562873 SPARNAPL 8 Unmodified _SPARNAPL_ 0 0 0 REV__ENSG00000170248|ENST00000307296|PDCD6IP REV__ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2330017089844 2 413.232502 824.450451 0.47437 0.00019602 -0.29194 -0.00012064 0.18242 7.5383E-05 413.2323599050714 24.429 0.38425 21.602 21.469 21.853 -2.8273 29 21 2 0 0 0 0.3408 1 13328 13328 50.855 6.448 1 2751000 + 59811 22459 39988 40882 69609 69609 0.031203624117438267 SPARNAPL 8 Unmodified _SPARNAPL_ 0 0 0 REV__ENSG00000170248|ENST00000307296|PDCD6IP REV__ENSG00000170248|ENST00000307296|PDCD6IP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 413.5500793457031 2 413.232502 824.450451 0.47437 0.00019602 -0.29194 -0.00012064 0.18242 7.5383E-05 413.2323599050714 24.429 0.38425 21.602 21.469 21.853 -2.8273 29 21 2 0 0 0 8.7369 1 13265 13265 44.407 8.3628 1 2751000 + 59812 22459 39988 40882 69610 69610 0.031203624117438267 SPASDTYIVF 10 Unmodified _SPASDTYIVF_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2687377929688 2 550.268947 1098.52334 0.32832 0.00018066 0.13612 7.4902E-05 0.46444 0.00025556 550.2689342851987 72.21 0.4673 72.21 71.966 72.433 0 76 20 5 0 0 0 0.0093317 2 40213 40213;40316 88.904 66.167 1 27784000 59813 9834 39989 40883 69611;69612 69611 -0.0219797337615546 SPASDTYIVF 10 Unmodified _SPASDTYIVF_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2692260742188 2 550.268947 1098.52334 0.65829 0.00036224 -0.63174 -0.00034762 0.026553 1.4611E-05 550.2689523004849 72.632 0.40417 72.156 71.959 72.363 -0.47609 57 18 5 0 0 0 0.017277 2 39798 39699;39798 78.149 52.75 1 9572100 59814 9834 39989 40883 69613;69614 69614 -0.0219797337615546 SPASDTYIVF 10 Unmodified _SPASDTYIVF_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA;nc|ENSG00000196531|Q13765|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.269287109375 2 550.268947 1098.52334 1.2951 0.00071265 -0.12184 -6.7044E-05 1.1733 0.00064561 550.2688057986193 79.592 0.70629 73.416 73.056 73.762 -6.1757 102 41 3 0 0 0 0.02987 3 52154 52023;52154;52288 68.081 38.999 1 88256000 59815 9834 39989 40883 69615;69616;69617 69616 -0.0219797337615546 SPASIAATSF 10 Unmodified _SPASIAATSF_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2429504394531 2 476.242732 950.470912 0.47145 0.00022453 1.1683 0.0005564 1.6398 0.00078092 476.24338346658607 52.845 0.54336 52.393 52.219 52.762 -0.45173 60 27 3 0 0 0 0.074936 1 28538 28538 52.268 26.869 1 3513100 59816 912 39990 40884 69618 69618 -0.006305117191004683 SPASPKISL 9 Unmodified _SPASPKISL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2632751464844 2 450.263468 898.512382 NaN NaN NaN NaN NaN NaN NaN 41.465 1 41.465 40.965 41.965 0 0 0 0 0.014214 1 22368 22368 86.332 3.8025 1 59817 7770 39991 40885 69619 69619 0.05906669040234647 SPASPKISL 9 Unmodified _SPASPKISL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.26318359375 2 450.263468 898.512382 -0.42811 -0.00019276 0.49578 0.00022323 0.067673 3.0471E-05 450.2636141274473 41.707 0.18234 41.401 41.333 41.515 -0.30682 11 8 2 0 0 0 0.011291 1 22124 22124 76.825 3.8568 1 5285300 59818 7770 39991 40885 69620 69620 0.05906669040234647 SPASPKISL 9 Unmodified _SPASPKISL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2638854980469 2 450.263468 898.512382 0.66202 0.00029808 -0.069877 -3.1463E-05 0.59214 0.00026662 450.26361310355344 46.234 0.30993 41.28 41.119 41.429 -4.9549 32 20 2 0 0 0 0.0061279 1 28555 28555 114.19 17.82 1 16555000 59819 7770 39991 40885 69621 69621 0.05906669040234647 SPASPKISL 9 Unmodified _SPASPKISL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 450.263468 898.512382 -0.16835 -7.58E-05 0.28984 0.0001305 0.12149 5.4702E-05 450.2634998824175 41.43 0.077496 41.43 41.364 41.441 0 0.060012 0.00012501 NaN 114.19 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3528800 59820 7770 39991 40885 0.05906669040234647 SPASSFHVL 9 Unmodified _SPASSFHVL_ 0 0 0 ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant;ENSG00000082781|ENST00000296181|ITGB5 ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.74560546875 2 472.745442 943.476331 0.65529 0.00030979 -0.012645 -5.9778E-06 0.64265 0.00030381 472.74549580198 49.297 0.24395 48.926 48.799 49.043 -0.37172 20 11 2 0 0 0 0.031062 1 26485 26485 54.774 22.468 1 2989200 59821 1352 39992 40886 69622 69622 0.0023321186339444466 SPASSFHVL 9 Unmodified _SPASSFHVL_ 0 0 0 ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant;ENSG00000082781|ENST00000296181|ITGB5 ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant ITGB5|p.S91I|1|0.2|ENSG00000082781|chr3:124859331-124859331|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.745849609375 2 472.745442 943.476331 1.1472 0.00054232 0.81181 0.00038378 1.959 0.0009261 472.7453687970864 54.427 0.27035 48.562 48.32 48.591 -5.8653 28 16 3 0 0 0 0.019303 1 34535 34535 64.236 18.215 1 9961900 59822 1352 39992 40886 69623 69623 0.0023321186339444466 SPASTFALSS 10 Unmodified _SPASTFALSS_ 0 0 0 nc|ENSG00000198728|Q86U70-3|LDB1;nc|ENSG00000198728|Q86U70-2|LDB1;ENSG00000198728|ENST00000673968|LDB1 nc|ENSG00000198728|Q86U70-3|LDB1 nc|ENSG00000198728|Q86U70-3|LDB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7490539550781 2 484.24019 966.465826 -0.082553 -3.9975E-05 0.85648 0.00041474 0.77393 0.00037477 484.242212122875 48.346 0.48855 48.346 48.149 48.638 0 64 23 4 0 0 0 0.22811 1 26494 26494 14.838 1.3304 1 27646000 59823 16495 39993 40887 69624 69624 -0.018748155817092993 SPASTYLPK 9 Unmodified _SPASTYLPK_ 0 0 0 REV__ENSG00000120833|ENST00000551556|SOCS2 REV__ENSG00000120833|ENST00000551556|SOCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7621459960938 2 482.260925 962.507297 0.18417 8.8817E-05 -0.28681 -0.00013832 -0.10264 -4.95E-05 482.260709341655 60.249 0.25599 59.758 59.63 59.886 -0.49079 21 12 2 0 0 0 0.2143 1 32796 32796 21.747 4.8044 1 3666300 + 59824 19265 39994 40888 69625 69625 0.024543651776298248 SPATHTRPRE 10 Unmodified _SPATHTRPRE_ 0 0 0 REV__ENST00000563856.1_1_16:88947348-88947540:-|nuORF REV__ENST00000563856.1_1_16:88947348-88947540:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3270263671875 2 576.299436 1150.58432 0.26475 0.00015257 -1.5675 -0.00090335 -1.3027 -0.00075077 576.298621925621 72.728 0.3121 72.77 72.548 72.86 0.041725 23 14 2 0 0 0 0.22941 1 39989 39989 13.906 4.5229 1 1930100 + 59825 28881 39995 40889 69626 69626 0.015049764466539273 SPATLRNQP 9 Unmodified _SPATLRNQP_ 0 0 0 ENSG00000124574|ENST00000372530|ABCC10;nc|ENSG00000124574|Q5T3U5-2|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 ENSG00000124574|ENST00000372530|ABCC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2662658691406 2 492.267073 982.519593 -0.3597 -0.00017707 -0.22092 -0.00010875 -0.58062 -0.00028582 492.26705400277064 19.996 0.42914 19.996 19.766 20.195 0 107 43 3 0 0 0 0.55775 1 10139 10139 3.9444 0 1 4213700 59826 3801 39996 40890 69627 69627 0.027634016406636874 SPATMAHAF 9 Oxidation (M) _SPATM(Oxidation (M))AHAF_ SPATM(1)AHAF SPATM(82)AHAF 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559864.1_1_17:78349619-78350798:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7152099609375 2 474.715827 947.417102 -0.22026 -0.00010456 -0.49057 -0.00023288 -0.71083 -0.00033744 474.71577586478423 24.588 0.31299 24.588 24.405 24.718 0 44 17 3 0 0 0 0.0094915 1 12539 12539 81.864 39.769 1 4243400 59827 8367 39997 40891 69628 69628 1421 -0.05871007422456387 SPATMAHAF 9 Oxidation (M) _SPATM(Oxidation (M))AHAF_ SPATM(1)AHAF SPATM(74)AHAF 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559864.1_1_17:78349619-78350798:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7153625488281 2 474.715827 947.417102 -0.24854 -0.00011799 -0.94072 -0.00044658 -1.1893 -0.00056456 474.7154477166025 25.01 0.2823 25.01 24.885 25.168 0 63 30 3 0 0 0 0.012158 1 12783 12783 74.396 38.352 1 4445300 59828 8367 39997 40891 69629 69629 1421 -0.05871007422456387 SPATMAHAF 9 Oxidation (M) _SPATM(Oxidation (M))AHAF_ SPATM(1)AHAF SPATM(100)AHAF 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559864.1_1_17:78349619-78350798:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7162475585938 2 474.715827 947.417102 0.417 0.00019795 0.021004 9.9711E-06 0.438 0.00020793 474.71584740584143 27.945 0.32821 24.797 24.639 24.967 -3.1482 32 17 2 0 0 0 0.0086629 1 15528 15528 101.72 50.867 1 16659000 59829 8367 39997 40891 69630 69630 1421 -0.05871007422456387 SPATMAHAF 9 Unmodified _SPATMAHAF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559864.1_1_17:78349619-78350798:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7188720703125 2 466.71837 931.422187 0.74175 0.00034619 0.95314 0.00044485 1.6949 0.00079103 466.71914416367986 40.608 0.41715 36.079 35.858 36.275 -4.5294 77 25 4 0 0 0 0.023164 1 24216 24216 60.39 37.241 1 35630000 59830 8367 39997 40892 69631 69631 -0.04626703559847556 SPAVAAPAY 9 Unmodified _SPAVAAPAY_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.4359130859375 1 846.435595 845.428318 0.25966 0.00021978 0.36613 0.00030991 0.62579 0.00052969 846.435895076611 36.925 0.32272 36.925 36.754 37.076 0 46 15 4 0 0 0 0.0036753 2 19649 19544;19649 123.1 55.752 1 20337000 59831 2406 39998 40893 69632;69633 69633 -0.0005786205667845934 SPAVAAPAY 9 Unmodified _SPAVAAPAY_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7218933105469 2 423.721436 845.428318 0.33186 0.00014062 0.23563 9.9842E-05 0.56749 0.00024046 423.7215231449715 36.91 0.32175 36.91 36.775 37.097 0 34 15 3 0 0 0 0.019303 2 19574 19574;19679 64.236 28.192 1 6462300 59832 2406 39998 40893 69634;69635 69634 -0.0005786205667845934 SPAVAAPAY 9 Unmodified _SPAVAAPAY_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 846.4365844726562 1 846.435595 845.428318 0.58825 0.00049792 -0.36122 -0.00030575 0.22703 0.00019217 846.435310505956 43.28 0.48093 38.516 38.243 38.724 -4.7648 71 33 3 0 0 0 0.0077963 3 26397 26124;26260;26397 109.63 42.285 1 91952000 59833 2406 39998 40893 69636;69637;69638 69638 -0.0005786205667845934 SPAVAAPAY 9 Unmodified _SPAVAAPAY_ 0 0 0 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 ENSG00000106211|ENST00000248553|HSPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2229919433594 2 423.721436 845.428318 0.93458 0.000396 -0.7856 -0.00033288 0.14897 6.3124E-05 423.72118026498754 43.242 0.3891 38.477 38.288 38.677 -4.7648 40 27 2 0 0 0 0.016184 2 26223 26223;26357 67.344 33.241 1 21175000 59834 2406 39998 40893 69639;69640 69639 -0.0005786205667845934 SPAVERLISSL 11 Unmodified _SPAVERLISSL_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.8399658203125 2 586.337695 1170.66084 0.65089 0.00038164 -0.92494 -0.00054233 -0.27406 -0.00016069 586.3369911670777 75.269 0.31245 74.792 74.656 74.968 -0.47714 23 16 2 0 0 0 0.14884 1 41195 41195 50.13 30.504 1 1797600 59835 349 39999 40894 69641 69641 0.08233355223296712 SPAVERLISSL 11 Unmodified _SPAVERLISSL_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3381958007812 2 586.337695 1170.66084 0.50683 0.00029717 0.058582 3.4349E-05 0.56541 0.00033152 586.3379707755629 74.796 0.41422 74.842 74.547 74.961 0.045967 29 18 2 0 0 0 0.061194 1 41195 41195 50.13 25.139 1 1742400 59836 349 39999 40894 69642 69642 0.08233355223296712 SPAVERLISSL 11 Unmodified _SPAVERLISSL_ 0 0 0 ENSG00000006744|ENST00000338034|ELAC2;ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF ENSG00000006744|ENST00000338034|ELAC2 ENSG00000006744|ENST00000338034|ELAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3372192382812 2 586.337695 1170.66084 1.1718 0.00068709 -1.0558 -0.00061903 0.11608 6.8063E-05 586.3371280247449 95.421 0.36243 89.245 89.021 89.383 -6.1757 33 20 2 0 0 0 3.1954E-06 2 63239 63110;63239 106.37 52.532 1 26445000 59837 349 39999 40894 69643;69644 69644 0.08233355223296712 SPAVGSILAAI 11 Unmodified _SPAVGSILAAI_ 0 0 0 nc|ENSG00000149476|Q3LXA3-2|TKFC;ENSG00000149476|ENST00000394900|TKFC nc|ENSG00000149476|Q3LXA3-2|TKFC nc|ENSG00000149476|Q3LXA3-2|TKFC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7761535644531 2 499.797675 997.580796 -0.44243 -0.00022112 0.78813 0.00039391 0.3457 0.00017278 499.7979585279779 76.969 0.19669 76.49 76.343 76.54 -0.47945 10 8 2 0 0 0 0.71036 1 42136 42136 3.2813 0 1 304370 59838 6009 40000 40895 69645 69645 0.08190913620080664 SPAVSRTQL 9 Unmodified _SPAVSRTQL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7694091796875 2 479.769448 957.524344 -0.26491 -0.0001271 -0.58686 -0.00028156 -0.85177 -0.00040865 479.76947909496334 25.498 0.24774 25.498 25.366 25.613 0 33 11 4 0 0 0 0.013609 1 13045 13045 70.332 16.499 1 6584100 59839 16412 40001 40896 69646 69646 0.04388285783431911 SPAVSRTQL 9 Unmodified _SPAVSRTQL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7692565917969 2 479.769448 957.524344 0.86182 0.00041348 -0.18785 -9.0123E-05 0.67398 0.00032335 479.76935966943324 28.671 0.35483 25.523 25.323 25.677 -3.1482 41 17 3 0 0 0 0.0026383 2 16080 15957;16080 128.57 48.977 1 38705000 59840 16412 40001 40896 69647;69648 69648 0.04388285783431911 SPAVVASYL 9 Unmodified _SPAVVASYL_ 0 0 0 nc|ENSG00000132854|Q5T7N3-2|KANK4;ENSG00000132854|ENST00000371153|KANK4 nc|ENSG00000132854|Q5T7N3-2|KANK4 nc|ENSG00000132854|Q5T7N3-2|KANK4 MSMS AL20221201_MKP_PDAC_01 4 453.749755859375 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 24.141 1 21.313 20.813 21.813 -2.8273 0 0 0 0.46757 1 13118 13118 16.942 0 1 59841 4458 40002 40897 69649 69649 0.029309801489034726 SPAWARAR 8 Unmodified _SPAWARAR_ 0 0 0 REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF REV__ENST00000451963.1_2_7:99818153-99818871:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7500610351562 2 457.751393 913.488233 NaN NaN NaN NaN NaN NaN NaN 20.974 1 20.974 20.474 21.474 0 0 0 0 0.95973 1 10582 10582 8.5933 0 1 + 59842 24282 40003 40898 69650 69650 0.028028733972178088 SPAWQEVR 8 Unmodified _SPAWQEVR_ 0 0 0 REV__ENST00000287652.8_1_3:10290066-10290432:+|nuORF REV__ENST00000287652.8_1_3:10290066-10290432:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7505493164062 2 486.748516 971.482479 NaN NaN NaN NaN NaN NaN NaN 21.315 1 21.315 20.815 21.815 0 0 0 0 0.92452 1 10775 10775 15.847 0 1 + 59843 25227 40004 40899 69651 69651 -0.004402699050956471 SPAYAIRSY 9 Unmodified _SPAYAIRSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2640380859375 2 514.263999 1026.51345 -0.41943 -0.0002157 -0.29228 -0.00015031 -0.71171 -0.00036601 514.2638383569176 34.77 0.20695 34.77 34.675 34.882 0 15 10 2 0 0 0 0.069655 1 18356 18356 40.239 13.356 1 2436000 59844 1446 40005 40900 69652 69652 0.0012488340912568674 SPAYAIRSY 9 Unmodified _SPAYAIRSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7651977539062 2 514.263999 1026.51345 0.76349 0.00039264 -0.49357 -0.00025383 0.26992 0.00013881 514.7645846508548 39.177 0.59802 34.726 34.298 34.896 -4.4509 71 37 3 0 0 0 0.2324 1 23046 23046 20.415 3.3016 1 11666000 59845 1446 40005 40900 69653 69653 0.0012488340912568674 SPAYAIRSY 9 Unmodified _SPAYAIRSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 514.263999 1026.51345 -0.37926 -0.00019504 0.96653 0.00049705 0.58726 0.00030201 514.2646874914662 34.931 0.1841 34.728 34.619 34.803 -0.20364 -0.01357 0.00092966 NaN 40.239 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1179800 59846 1446 40005 40900 0.0012488340912568674 SPCCIVTSTY 10 2 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))C(Carbamidomethyl (C))IVTSTY_ SPC(1)C(1)IVTSTY SPC(68)C(68)IVTSTY 0 2 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;ENST00000518337.1_1_8:74128289-74128592:-|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2583618164062 2 594.257199 1186.49985 0.67164 0.00039913 -0.5465 -0.00032476 0.12514 7.4364E-05 594.257195132935 51.133 0.42339 45.484 45.248 45.672 -5.649 49 25 3 0 0 0 0.02987 2 32203 32080;32203 68.081 47.666 1 54473000 59847 1671;1308 40006 40901 69654;69655 69655 116;117 -0.08594478476607037 SPCDFRSSF 9 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))DFRSSF_ SPC(1)DFRSSF SPC(110)DFRSSF 0 1 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7340698242188 2 551.734748 1101.45494 0.65754 0.00036279 -0.68518 -0.00037804 -0.027638 -1.5249E-05 551.7345088527968 45.599 0.41272 40.644 40.45 40.863 -4.9549 70 27 3 0 0 0 0.0061279 2 28075 27928;28075 114.19 70.328 1 35375000 59848 7828 40007 40902 69656;69657 69657 762 -0.09172541227667352 SPCDGPSKVSY 11 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))DGPSKVSY_ SPC(1)DGPSKVSY SPC(150)DGPSKVSY 0 1 0 ENSG00000179833|ENST00000313349|SERTAD2 ENSG00000179833|ENST00000313349|SERTAD2 ENSG00000179833|ENST00000313349|SERTAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7657470703125 2 598.766245 1195.51794 -0.14017 -8.3929E-05 0.1401 8.3885E-05 -7.4175E-05 -4.4413E-08 598.766128694338 27.97 0.29246 24.822 24.691 24.983 -3.1482 34 15 3 0 0 0 1.0839E-20 2 15517 15517;15637 146.48 102.71 1 14049000 59849 8858 40008 40903 69658;69659 69658 842 -0.07200020230266091 SPCERYLVTF 10 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))ERYLVTF_ SPC(1)ERYLVTF SPC(44)ERYLVTF 0 1 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000463026.5_1_7:2404000-2406084:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B nc|ENSG00000106263|P55884-2|EIF3B MSMS AL20221201_MKP_PDAC_01 4 636.3099365234375 2 636.308081 1270.60161 NaN NaN NaN NaN NaN NaN NaN 64.495 1 58.32 57.82 58.82 -6.1757 0 0 0 0.18401 1 41788 41788 44.392 17.508 1 59850 2409 40009 40904 69660 69660 239 -0.022868640625802072 SPCEVRVLM 9 Carbamidomethyl (C),Oxidation (M) _SPC(Carbamidomethyl (C))EVRVLM(Oxidation (M))_ SPC(1)EVRVLM SPCEVRVLM(1) SPC(60)EVRVLM SPCEVRVLM(60) 0 1 1 nc|ENSG00000104960|Q86YD1-2|PTOV1;ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1;ENST00000595934.1_1_19:50360240-50360429:+|nuORF nc|ENSG00000104960|Q86YD1-2|PTOV1 nc|ENSG00000104960|Q86YD1-2|PTOV1 MSMS AL20221201_MKP_PDAC_01 4 553.7703247070312 2 553.770277 1105.526 NaN NaN NaN NaN NaN NaN NaN 39.404 1 34.953 34.453 35.453 -4.4509 0 0 0 0.044471 1 23381 23381 60.074 27.768 1 59851 2264 40010 40905 69661 69661 223 388 -0.022541645144656286 SPCFRMRKM 9 Unmodified _SPCFRMRKM_ 0 0 0 ENST00000377110.7_2_9:73461461-73477999:-|nuORF ENST00000377110.7_2_9:73461461-73477999:-|nuORF ENST00000377110.7_2_9:73461461-73477999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8575134277344 3 385.857646 1154.55111 -0.013751 -5.3057E-06 0.34034 0.00013132 0.32659 0.00012602 385.8576200196548 15.408 0.12199 15.414 15.365 15.487 0.0057764 10 6 2 0 0 0 0.54213 1 7690 7690 4.897 0 1 405350 59852 12515 40011 40906 69662 69662 -0.019983881928965275 SPCGACRQVM 10 2 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))GAC(Carbamidomethyl (C))RQVM_ SPC(1)GAC(1)RQVM SPC(64)GAC(64)RQVM 0 2 0 ENSG00000158825|ENST00000375071|CDA ENSG00000158825|ENST00000375071|CDA ENSG00000158825|ENST00000375071|CDA MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2490844726562 2 583.249185 1164.48382 0.12398 7.231E-05 0.43055 0.00025112 0.55453 0.00032343 583.2498031188157 23.403 0.26471 20.624 20.492 20.757 -2.7784 24 15 2 0 0 0 0.038363 1 12698 12698 63.961 42.37 1 2632800 59853 6611 40012 40907 69663 69663 650;651 -0.0918446319449231 SPCGLYHQY 9 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))GLYHQY_ SPC(1)GLYHQY SPC(140)GLYHQY 0 1 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7456665039062 2 562.745116 1123.47568 1.135 0.00063871 -0.61864 -0.00034813 0.51635 0.00029057 562.744893149722 35.046 0.57554 30.951 30.616 31.192 -4.0951 98 33 4 0 0 0 0.0004779 2 20299 20176;20299 144.35 115.27 1 91504000 59854 5215 40013 40908 69664;69665 69665 534 -0.0811195084800147 SPCGSWIAY 9 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))GSWIAY_ SPC(1)GSWIAY SPC(60)GSWIAY 0 1 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7286376953125 2 520.728935 1039.44332 0.61326 0.00031934 -0.79884 -0.00041598 -0.18558 -9.6636E-05 520.7290047171934 66.808 0.3772 60.632 60.412 60.789 -6.1757 50 21 3 0 0 0 0.023164 1 43381 43381 60.39 32.761 1 34751000 59855 5299 40014 40909 69666 69666 545 -0.0748273825099659 SPCHNGGTCL 10 Unmodified _SPCHNGGTCL_ 0 0 0 ENSG00000132692|ENST00000329117|BCAN ENSG00000132692|ENST00000329117|BCAN ENSG00000132692|ENST00000329117|BCAN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7535095214844 2 494.702394 987.390235 0.34095 0.00016867 -2.4439 -0.001209 -2.1029 -0.0010403 494.70108406166804 49.164 0.1731 49.164 49.062 49.236 0 12 7 2 0 0 0 0.23117 1 26974 26974 7.2892 1.5288 1 1550400 59856 4439 40015 40910 69667 69667 -0.1039643930529337 SPCKQVSQIKY 11 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))KQVSQIKY_ SPC(1)KQVSQIKY SPC(74)KQVSQIKY 0 1 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.5679016113281 3 446.567583 1336.68092 0.68689 0.00030674 0.0098051 4.3787E-06 0.69669 0.00031112 446.5676891987098 28.223 0.46006 25.075 24.843 25.303 -3.1482 102 24 6 0 0 0 0.0057198 2 15734 15612;15734 74.077 66.6 1 351620000 59857 6368 40016 40911 69668;69669 69669 626 0.02604782891580726 SPCKQVSQIKY 11 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))KQVSQIKY_ SPC(1)KQVSQIKY SPC(190)KQVSQIKY 0 1 0 ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 669.3489990234375 2 669.347737 1336.68092 0.27633 0.00018496 0.067441 4.5141E-05 0.34377 0.0002301 669.347980182644 28.221 0.36923 25.073 24.861 25.23 -3.1482 67 19 4 0 0 0 3.8769999999999997E-44 2 15639 15639;15760 190.53 150.58 1 65498000 59858 6368 40016 40911 69670;69671 69670 626 0.02604782891580726 SPCLKVFEL 9 Carbamidomethyl (C) _SPC(Carbamidomethyl (C))LKVFEL_ SPC(1)LKVFEL SPC(130)LKVFEL 0 1 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7919921875 2 546.791535 1091.56852 0.75791 0.00041442 -0.42725 -0.00023362 0.33066 0.0001808 546.7916504618993 83.298 1.3106 77.122 76.197 77.508 -6.1757 125 72 2 0 0 0 0.0020017 5 54768 54444;54633;54768;54902;55029 132.38 73.701 1 12883000 59859 9188 40017 40912 69672;69673;69674;69675;69676 69674 859 0.026395538853876133 SPCLLYFQG 9 Unmodified _SPCLLYFQG_ 0 0 0 REV__ENST00000532402.5_1_11:62392602-62392905:-|nuORF REV__ENST00000532402.5_1_11:62392602-62392905:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2494506835938 2 514.249503 1026.48445 NaN NaN NaN NaN NaN NaN NaN 26.496 1 26.523 26.023 27.023 0.026951 0 0 0 0.82739 1 13744 13744 4.3292 0.73274 1 + 59860 28461 40018 40913 69677 69677 -0.027729772114980733 SPCRMWQAD 9 Unmodified _SPCRMWQAD_ 0 0 0 ENST00000330871.3_1_17:76354168-76354477:-|nuORF ENST00000330871.3_1_17:76354168-76354477:-|nuORF ENST00000330871.3_1_17:76354168-76354477:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 365.1568298339844 3 365.156638 1092.44808 NaN NaN NaN NaN NaN NaN NaN 85.255 1 79.08 78.58 79.58 -6.1757 0 0 0 0.67641 1 56135 56135 10.151 0.6066 1 59861 11854 40019 40914 69678 69678 -0.09444177379850771 SPDAQVPVF 9 Unmodified _SPDAQVPVF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L;ENST00000554293.1_1_14:81945919-81950649:-|nuORF ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2457885742188 2 480.245275 958.475997 0.61655 0.0002961 -0.060486 -2.9048E-05 0.55607 0.00026705 480.24502361604743 60.024 0.39635 60.024 59.857 60.254 0 37 17 3 0 0 0 0.015445 1 33434 33434 68.081 25.113 1 5042100 59862 1056 40020 40915 69679 69679 -0.0049020785647826415 SPDAQVPVF 9 Unmodified _SPDAQVPVF_ 0 0 0 ENSG00000071537|ENST00000336735|SEL1L;ENST00000554293.1_1_14:81945919-81950649:-|nuORF ENSG00000071537|ENST00000336735|SEL1L ENSG00000071537|ENST00000336735|SEL1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.48193359375 1 959.483273 958.475997 0.35102 0.0003368 0.5316 0.00051006 0.88262 0.00084686 959.4831015651422 60.069 0.23476 60.069 59.923 60.158 0 15 10 2 0 0 0 0.031062 1 33487 33487 54.774 12.679 1 1098000 59863 1056 40020 40915 69680 69680 -0.0049020785647826415 SPDATIRIW 9 Unmodified _SPDATIRIW_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7850341796875 2 529.785099 1057.55564 0.21421 0.00011349 -1.0438 -0.00055301 -0.82962 -0.00043952 529.7845480792815 59.774 0.31889 59.283 59.11 59.429 -0.49079 26 15 2 0 0 0 0.017075 1 32508 32508 66.457 38.828 1 7917600 59864 2703 40021 40916 69681 69681 0.029168588175025434 SPDATIRIW 9 Unmodified _SPDATIRIW_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7849731445312 2 529.785099 1057.55564 0.43022 0.00022792 -1.9668 -0.001042 -1.5366 -0.00081406 529.7825812846288 65.329 0.85535 59.153 58.868 59.723 -6.1757 114 49 4 0 0 0 0.0082353 2 42341 42341;42477 96.111 42.707 1 104900000 59865 2703 40021 40916 69682;69683 69682 0.029168588175025434 SPDATIRIW 9 Unmodified _SPDATIRIW_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.785099 1057.55564 0.28811 0.00015264 1.5944 0.00084469 1.8825 0.00099733 529.784485438306 59.442 0.20613 59.389 59.273 59.479 -0.053062 0.1138 0.0028888 NaN 96.111 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3022400 59866 2703 40021 40916 0.029168588175025434 SPDEAALVY 9 Unmodified _SPDEAALVY_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENSG00000145246|ENST00000273859|ATP10D;ENSG00000206190|ENST00000555815|ATP10A ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.4609375 1 964.462204 963.454927 -0.57744 -0.00055692 0.44385 0.00042807 -0.13359 -0.00012885 964.4624042260643 48.649 0.29436 48.649 48.491 48.786 0 23 13 2 0 0 0 0.0090851 1 26658 26658 85.357 49.313 1 3226500 59867 5680;10395 40022 40917 69684 69684 -0.028262179559988 SPDEAALVY 9 Unmodified _SPDEAALVY_ 0 0 0 ENSG00000145246|ENST00000273859|ATP10D;ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF ENSG00000145246|ENST00000273859|ATP10D;ENSG00000206190|ENST00000555815|ATP10A ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7351989746094 2 482.73474 963.454927 -0.46765 -0.00022575 0.78069 0.00037686 0.31304 0.00015111 482.73499183125267 48.666 0.33718 48.666 48.47 48.808 0 23 15 2 0 0 0 0.06187 1 26702 26702 42.095 18.946 1 3183300 59868 5680;10395 40022 40917 69685 69685 -0.028262179559988 SPDECLWMDW 10 Unmodified _SPDECLWMDW_ 0 0 0 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.2481689453125 2 641.249374 1280.4842 0.33358 0.00021391 -1.5524 -0.00099547 -1.2188 -0.00078156 641.2484639335281 72.141 0.40479 72.18 72.035 72.439 0.039032 69 19 5 0 0 0 0.71276 1 39697 39697 1.4819 0.15237 1 17217000 59869 618 40023 40918 69686 69686 -0.14482764993681485 SPDEKSVITY 10 Unmodified _SPDEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7837524414062 2 569.784961 1137.55537 NaN NaN NaN NaN NaN NaN NaN 35.209 1 35.209 34.709 35.709 0 0 0 0 0.0020162 1 18604 18604 103.82 58.124 1 59870 6155;16276;4022;14741 40024 40919 69687 69687 -0.00790605692986901 SPDEKSVITY 10 Unmodified _SPDEKSVITY_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000485063.1_1_1:39748843-39749872:+|nuORF;ENSG00000151914|ENST00000680361|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.2512817382812 2 569.784961 1137.55537 0.45517 0.00025935 -3.2093 -0.0018286 -2.7541 -0.0015692 569.7846025597538 40.205 0.14794 35.676 35.582 35.73 -4.5294 18 13 2 0 0 0 0.083694 1 24006 24006 32.037 15.888 1 13468000 59871 6155;16276;4022;14741 40024 40919 69688 69688 -0.00790605692986901 SPDENLVSL 9 Unmodified _SPDENLVSL_ 0 0 0 ENST00000569761.1_1_15:75195123-75197568:-|nuORF;ENST00000566894.1_1_15:75197493-75197640:-|nuORF;ENST00000564857.1_1_15:75197493-75199009:-|nuORF;nc|ENSG00000178761|Q5XKK7-3|FAM219B;ENSG00000178761|ENST00000357635|FAM219B ENST00000569761.1_1_15:75195123-75197568:-|nuORF ENST00000569761.1_1_15:75195123-75197568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2437438964844 2 487.245472 972.476391 0.52368 0.00025516 -3.0273 -0.001475 -2.5036 -0.0012199 487.24415953450244 57.088 0.34453 57.088 56.877 57.221 0 23 14 2 0 0 0 0.20428 1 31763 31763 22.736 0 1 1087700 59872 8773 40025 40920 69689 69689 -0.010948329272878254 SPDEVAKEL 9 Unmodified _SPDEVAKEL_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2532043457031 2 494.253297 986.492041 NaN NaN NaN NaN NaN NaN NaN 33.976 1 33.976 33.476 34.476 0 0 0 0 0.010776 1 17861 17861 91.085 9.1946 1 59873 4180 40026 40921 69690 69690 -0.0017454641023277873 SPDFEILLV 9 Unmodified _SPDFEILLV_ 0 0 0 REV__ENSG00000175595|ENST00000311895|ERCC4 REV__ENSG00000175595|ENST00000311895|ERCC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.223754882812 1 1032.56119 1031.55391 -0.35515 -0.00036672 -0.012536 -1.2944E-05 -0.36769 -0.00037966 1032.5607414261247 90.381 0.95052 90.381 90.02 90.971 0 60 53 2 0 0 0 0.2143 2 50074 49864;50074 21.747 0 1 799790 + 59874 22882 40027 40922 69691;69692 69692 0.039398050088948366 SPDGAPVQVF 10 Unmodified _SPDGAPVQVF_ 0 0 0 nc|ENSG00000163362|Q3KP66|INAVA;ENSG00000163362|ENST00000413687|INAVA;ENST00000465162.1_1_1:200881118-200883006:+|nuORF;ENST00000487626.1_1_3:111904329-111904731:-|nuORF nc|ENSG00000163362|Q3KP66|INAVA nc|ENSG00000163362|Q3KP66|INAVA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.756103515625 2 508.756007 1015.49746 0.73013 0.00037146 1.8126 0.00092217 2.5427 0.0012936 508.7561997506472 57.313 0.31147 57.313 57.156 57.467 0 30 13 4 0 0 0 0.1942 1 31877 31877 34.402 4.5611 1 2009900 59875 16325 40028 40923 69693 69693 -0.00966822827751912 SPDGHLFQVEY 11 Unmodified _SPDGHLFQVEY_ 0 0 0 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 ENSG00000101182|ENST00000370873|PSMA7;nc|ENSG00000154611|Q8TAA3-2|PSMA8 ENSG00000101182|ENST00000370873|PSMA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3018188476562 2 646.30131 1290.58807 NaN NaN NaN NaN NaN NaN NaN 56.824 1 56.824 56.324 57.324 0 0 0 0 0.83999 1 31612 31612 10.151 5.8213 1 59876 1924;6336 40029 40924 69694 69694 -0.045603985701291094 SPDGRTYYY 9 Unmodified _SPDGRTYYY_ 0 0 0 nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;ENST00000467114.2_1_2:153535806-153549567:-|nuORF nc|ENSG00000196504|O75400-2|PRPF40A nc|ENSG00000196504|O75400-2|PRPF40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2468872070312 2 561.248546 1120.48254 -0.42463 -0.00023832 -0.31059 -0.00017432 -0.73521 -0.00041264 561.2480257465669 30.112 0.24899 30.112 29.994 30.243 0 39 11 4 0 0 0 0.065007 1 15600 15600 43.982 11.196 1 13852000 59877 9830 40030 40925 69695 69695 -0.07288314695779263 SPDHFLEYL 9 Unmodified _SPDHFLEYL_ 0 0 0 REV__AMER3|p.A557Rfs*127|1|0.13|ENSG00000178171|chr2:130763735-130763735|G/-|frameshift_variant REV__AMER3|p.A557Rfs*127|1|0.13|ENSG00000178171|chr2:130763735-130763735|G/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7680053710938 2 560.769114 1119.52368 0.43023 0.00024126 -1.0506 -0.00058916 -0.62041 -0.0003479 560.7685216871607 57.044 0.34494 56.558 56.369 56.714 -0.48554 21 15 2 0 0 0 0.30562 1 31020 31020 16.942 7.5949 1 3152700 + 59878 16723 40031 40926 69696 69696 -0.0313055365627406 SPDHFLEYL 9 Unmodified _SPDHFLEYL_ 0 0 0 REV__AMER3|p.A557Rfs*127|1|0.13|ENSG00000178171|chr2:130763735-130763735|G/-|frameshift_variant REV__AMER3|p.A557Rfs*127|1|0.13|ENSG00000178171|chr2:130763735-130763735|G/-|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.769114 1119.52368 0.43023 0.00024126 -1.0506 -0.00058916 -0.62041 -0.0003479 560.7685216871607 57.044 0.34494 56.558 56.369 56.714 -0.48554 0 0 NaN 16.942 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3152700 + 59879 16723 40031 40926 -0.0313055365627406 SPDHTIILL 9 Unmodified _SPDHTIILL_ 0 0 0 ENSG00000188167|ENST00000342462|TMPPE;nc|ENSG00000188167|Q6ZT21-2|TMPPE ENSG00000188167|ENST00000342462|TMPPE ENSG00000188167|ENST00000342462|TMPPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7911682128906 2 504.78985 1007.56515 0.4428 0.00022352 0.51585 0.0002604 0.95866 0.00048392 504.79007560181856 65.68 0.30724 65.68 65.503 65.81 0 24 13 3 0 0 0 0.087258 1 36599 36599 36.044 5.8194 1 1904200 59880 9635 40032 40927 69697 69697 0.06166627103061728 SPDIKETTEE 10 Unmodified _SPDIKETTEE_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8320922851562 2 574.769508 1147.52446 0.19669 0.00011305 3.1223 0.0017946 3.319 0.0019077 574.7714842633327 65.737 0.21295 65.253 65.101 65.314 -0.48428 14 8 3 0 0 0 0.22154 1 35803 35803 21.537 2.175 1 1532900 59881 2083 40033 40928 69698 69698 -0.0433980379791592 SPDKAAQLF 9 Unmodified _SPDKAAQLF_ 0 0 0 REV__ENSG00000105220|ENST00000356487|GPI REV__ENSG00000105220|ENST00000356487|GPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7591857910156 2 488.758549 975.502546 0.65342 0.00031937 1.8786 0.00091819 2.532 0.0012376 488.75882851579934 68.308 0.2217 67.827 67.745 67.967 -0.48071 11 9 2 0 0 0 0.46501 1 37373 37373 9.3831 0 1 901640 + 59882 18406 40034 40929 69699 69699 0.013814810348549145 SPDLDMHA 8 Unmodified _SPDLDMHA_ 0 0 0 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 MSMS AL20221201_MKP_PDAC_01 4 443.1918029785156 2 443.192185 884.369817 NaN NaN NaN NaN NaN NaN NaN 85.274 1 79.099 78.599 79.599 -6.1757 0 0 0 0.63034 1 56148 56148 32.117 6.7177 1 59883 7328 40035 40930 69700 69700 -0.07699286693457452 SPDLEWHAA 9 Unmodified _SPDLEWHAA_ 0 0 0 ENSG00000016082|ENST00000230658|ISL1;ENSG00000159556|ENST00000290759|ISL2 ENSG00000016082|ENST00000230658|ISL1 ENSG00000016082|ENST00000230658|ISL1 MSMS AL20221201_MKP_PDAC_01 4 513.2365112304688 2 513.237981 1024.46141 NaN NaN NaN NaN NaN NaN NaN 49.425 1 44.028 43.528 44.528 -5.3961 0 0 0 0.46757 1 30879 30879 16.942 1.0951 1 59884 500 40036 40931 69701 69701 -0.049842800046235425 SPDLRLTWL 9 Unmodified _SPDLRLTWL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;ENSG00000130158|ENST00000294618|DOCK6 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000130158|ENST00000294618|DOCK6 nc|ENSG00000116641|Q96N67-4|DOCK7 MSMS AL20221201_MKP_PDAC_01 4 550.8101806640625 2 550.808574 1099.60259 NaN NaN NaN NaN NaN NaN NaN 96.855 1 90.679 90.179 91.179 -6.1757 0 0 0 0.025508 1 64186 64186 71.708 33.532 1 59885 3233;4182;2473 40037 40932 69702 69702 0.056777183686335775 SPDMLYQYL 9 Unmodified _SPDMLYQYL_ 0 0 0 nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 nc|ENSG00000005175|Q9H6T3-3|RPAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2615966796875 2 565.26535 1128.51615 0.65844 0.00037219 -0.57848 -0.000327 0.079957 4.5197E-05 565.2637701043552 57.325 0.18232 57.325 57.26 57.443 0 12 7 2 0 0 0 0.16226 1 31956 31956 26.884 6.43 1 821630 59886 299 40038 40933 69703 69703 -0.04297029248209583 SPDNPSSAL 9 Unmodified _SPDNPSSAL_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4107055664062 1 887.410502 886.403226 -0.38506 -0.00034171 0.62108 0.00055115 0.23602 0.00020944 887.4108648779353 30.863 0.32471 30.863 30.67 30.995 0 28 15 2 0 0 0 0.0087807 2 16007 16007;16109 106.94 17.539 1 2126100 59887 7712 40039 40934 69704;69705 69704 -0.04451961649908753 SPDNPSSAL 9 Unmodified _SPDNPSSAL_ 0 0 0 nc|ENSG00000168062|Q8N1L9-2|BATF2;ENSG00000168062|ENST00000301887|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 nc|ENSG00000168062|Q8N1L9-2|BATF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 887.410888671875 1 887.410502 886.403226 -0.03019 -2.6791E-05 0.87184 0.00077368 0.84165 0.00074689 887.4111179699041 36.314 0.26902 32.121 31.899 32.168 -4.1928 20 15 2 0 0 0 3.8138E-07 1 21115 21115 165.72 35.948 1 6812300 59888 7712 40039 40934 69706 69706 -0.04451961649908753 SPDPCAADCSC 11 Unmodified _SPDPCAADCSC_ 0 0 0 ENST00000588439.1_1_19:36395473-36398510:-|nuORF ENST00000588439.1_1_19:36395473-36398510:-|nuORF ENST00000588439.1_1_19:36395473-36398510:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1068.620483398438 1 1068.34309 1067.33582 0.71473 0.00076358 -0.36361 -0.00038846 0.35113 0.00037513 1068.3465525894294 78.412 0.20553 78.465 78.327 78.532 0.052444 12 8 2 0 0 0 0.7326 1 43224 43224 1.1933 0.39971 1 2157200 59889 15647 40040 40935 69707 69707 -0.19515819239040866 SPDPFIQY 8 Unmodified _SPDPFIQY_ 0 0 0 REV__ENSG00000213626|ENST00000395323|LBH REV__ENSG00000213626|ENST00000395323|LBH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7319946289062 2 483.732 965.449448 0.25773 0.00012467 0.32733 0.00015834 0.58506 0.00028301 483.73190753875826 62.894 0.32685 62.894 62.704 63.031 0 21 13 2 0 0 0 0.75262 1 35073 35073 12.532 0.89125 1 1254200 + 59890 24289 40041 40936 69708 69708 -0.03465896747809438 SPDPGILAY 9 Unmodified _SPDPGILAY_ 0 0 0 nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4703369140625 1 932.472374 931.465098 0.57287 0.00053419 -0.30842 -0.00028759 0.26446 0.0002466 932.4717842898301 58.067 0.37343 58.067 57.917 58.29 0 24 14 2 0 0 0 0.016184 2 32306 32306;32420 67.344 33.241 1 3492900 59891 4680 40042 40937 69709;69710 69709 -0.0033761023078113794 SPDPGILAY 9 Unmodified _SPDPGILAY_ 0 0 0 nc|ENSG00000135241|Q9NP80-3|PNPLA8;nc|ENSG00000135241|Q9NP80-2|PNPLA8;ENSG00000135241|ENST00000257694|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 nc|ENSG00000135241|Q9NP80-3|PNPLA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4737548828125 1 932.472374 931.465098 0.89581 0.00083532 -0.1157 -0.00010789 0.78011 0.00072743 932.4726284626702 66.008 0.19433 59.832 59.758 59.952 -6.1757 12 10 2 0 0 0 0.0088975 1 42915 42915 104.8 52.531 1 10324000 59892 4680 40042 40937 69711 69711 -0.0033761023078113794 SPDPHKGLVLL 11 Unmodified _SPDPHKGLVLL_ 0 0 0 ENST00000572274.1_1_16:4391391-4409335:-|nuORF;ENST00000575531.5_1_16:4407102-4412712:-|nuORF;ENST00000575714.5_1_16:4408319-4455566:-|nuORF;nc|ENSG00000262246|P57737-2|CORO7;nc|ENSG00000262246|P57737-4|CORO7;ENSG00000262246|ENST00000251166|CORO7;nc|ENSG00000262246|P57737-3|CORO7 ENST00000572274.1_1_16:4391391-4409335:-|nuORF ENST00000572274.1_1_16:4391391-4409335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5643615722656 3 392.564279 1174.67101 0.28718 0.00011274 -0.0088313 -3.4668E-06 0.27835 0.00010927 392.5642300027742 51.911 0.26572 51.477 51.325 51.59 -0.43367 21 13 2 0 0 0 0.4121 1 28016 28016 20.871 4.3053 1 3125100 59893 10847 40043 40938 69712 69712 0.09065962948511697 SPDPLPVRY 9 Unmodified _SPDPLPVRY_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2796020507812 2 522.279649 1042.54475 0.32374 0.00016908 -0.31613 -0.00016511 0.0076082 3.9736E-06 522.279315918504 46.95 0.40876 46.95 46.762 47.171 0 63 19 5 0 0 0 0.009483 2 25625 25625;25738 81.89 55.007 1 76009000 59894 7596 40044 40939 69713;69714 69713 0.025174564432290936 SPDPLPVRY 9 Unmodified _SPDPLPVRY_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7802124023438 2 522.279649 1042.54475 0.58381 0.00030491 -0.91061 -0.00047559 -0.3268 -0.00017068 522.2791113058848 47.266 0.3048 46.914 46.759 47.064 -0.3526 39 14 4 0 0 0 0.009483 2 25293 25293;25405 81.89 55.007 1 12760000 59895 7596 40044 40939 69715;69716 69715 0.025174564432290936 SPDPLPVRY 9 Unmodified _SPDPLPVRY_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2818603515625 2 522.279649 1042.54475 1.1091 0.00057924 2.9947 0.0015641 4.1038 0.0021433 522.2821846770433 52.838 0.84065 47.034 46.46 47.301 -5.8042 88 46 3 0 0 0 0.010611 2 33436 33318;33436 78.728 48.092 1 149170000 59896 7596 40044 40939 69717;69718 69718 0.025174564432290936 SPDQKKIISL 10 Unmodified _SPDQKKIISL_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8920288085938 3 376.892284 1127.65502 0.40083 0.00015107 0.32842 0.00012378 0.72925 0.00027485 376.8921760311646 36.8 0.22646 36.8 36.71 36.936 0 25 10 3 0 0 0 0.39689 1 19541 19541 21.799 10.168 1 1978400 59897 6382 40045 40940 69719 69719 0.09630256711625407 SPDQKKIISL 10 Unmodified _SPDQKKIISL_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8921813964844 3 376.892284 1127.65502 1.33 0.00050126 0.09563 3.6042E-05 1.4256 0.0005373 376.89221426020697 40.632 0.32535 36.103 35.918 36.243 -4.5294 36 19 2 0 0 0 0.082165 1 24262 24262 50.648 19.186 1 14361000 59898 6382 40045 40940 69720 69720 0.09630256711625407 SPDQKKIISL 10 Unmodified _SPDQKKIISL_ 0 0 0 nc|ENSG00000155324|Q96HH9-4|GRAMD2B;ENSG00000155324|ENST00000285689|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B nc|ENSG00000155324|Q96HH9-4|GRAMD2B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.892284 1127.65502 -0.2896 -0.00010915 1.1821 0.00044552 0.89247 0.00033637 376.8925810205987 36.985 0.21959 36.735 36.623 36.843 -0.2497 -0.032275 0.00063328 NaN 21.799 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1030800 59899 6382 40045 40940 0.09630256711625407 SPDQRETQQHR 11 Unmodified _SPDQRETQQHR_ 0 0 0 REV__ENSG00000243910|ENST00000490341|TUBA4B REV__ENSG00000243910|ENST00000490341|TUBA4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2242736816406 3 461.223756 1380.64944 0.22081 0.00010184 -0.074042 -3.415E-05 0.14676 6.7691E-05 461.22393017962634 23.894 0.40317 21.067 20.881 21.284 -2.8273 81 23 4 0 0 0 0.53952 2 12892 12892;13007 8.2864 0 1 33421000 + 59900 24478 40046 40941 69721;69722 69721 -0.025660738181386478 SPDRARRLQL 10 Unmodified _SPDRARRLQL_ 0 0 0 nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5696105957031 3 404.570427 1210.68945 -0.054949 -2.2231E-05 -0.44709 -0.00018088 -0.50204 -0.00020311 404.5702449496292 22.417 0.24998 22.435 22.282 22.532 0.01749 32 11 4 0 0 0 0.49559 1 11470 11470 16.566 7.3221 1 13947000 59901 4716 40047 40942 69723 69723 0.09253517643082887 SPDRARRLQL 10 Unmodified _SPDRARRLQL_ 0 0 0 nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 nc|ENSG00000135525|Q14244-5|MAP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5705871582031 3 404.570427 1210.68945 0.30143 0.00012195 0.14108 5.7076E-05 0.44251 0.00017903 404.57048339195563 24.76 0.44627 21.877 21.637 22.083 -2.8831 82 26 4 0 0 0 0.47869 2 13525 13416;13525 17.443 8.4664 1 110000000 59902 4716 40047 40942 69724;69725 69725 0.09253517643082887 SPDSDEEDE 9 Unmodified _SPDSDEEDE_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.6766357421875 2 511.675273 1021.33599 0.56295 0.00028805 2.6259 0.0013436 3.1888 0.0016316 511.67653785963165 38.481 0.21703 38.481 38.402 38.62 0 18 11 2 0 0 0 0.55144 1 20592 20592 4.3292 1.44 1 1806300 59903 13944 40048 40943 69726 69726 -0.17382081442178787 SPDSDEEDE 9 Unmodified _SPDSDEEDE_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.6773681640625 2 511.675273 1021.33599 NaN NaN NaN NaN NaN NaN NaN 45.122 1 40.27 39.77 40.77 -4.852 0 0 0 0.53226 1 27643 27643 14.838 5.2943 1 59904 13944 40048 40943 69727 69727 -0.17382081442178787 SPDSDEEDE 9 Unmodified _SPDSDEEDE_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENST00000477668.5_1_3:127323572-127337961:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 511.6767272949219 2 511.675273 1021.33599 NaN NaN NaN NaN NaN NaN NaN 45.302 1 40.347 39.847 40.847 -4.9549 0 0 0 0.56093 1 27784 27784 13.906 3.0821 1 59905 13944 40048 40943 69728 69728 -0.17382081442178787 SPDSGVYEM 9 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ SPDSGVYEM(1) SPDSGVYEM(110) 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7002868652344 2 500.70004 999.385527 -0.021741 -1.0886E-05 -0.14989 -7.5052E-05 -0.17164 -8.5938E-05 500.70014192090645 22.852 0.92383 22.852 22.423 23.347 0 158 47 5 0 0 0 0.0067112 4 11543 11446;11543;11643;11740 112.59 70.499 1 42674000 59906 8296;16388 40049 40944 69729;69730;69731;69732 69730 1405 -0.11419044967067293 SPDSGVYEM 9 Oxidation (M) _SPDSGVYEM(Oxidation (M))_ SPDSGVYEM(1) SPDSGVYEM(140) 0 0 1 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.6999816894531 2 500.70004 999.385527 0.65986 0.00033039 -0.36938 -0.00018495 0.29048 0.00014544 500.69993337809865 26.892 0.59058 23.855 23.57 24.161 -3.0365 97 30 5 0 0 0 0.0010099 3 14739 14739;14854;14974 139.54 88.689 1 194420000 59907 8296;16388 40049 40944 69733;69734;69735 69733 1405 -0.11419044967067293 SPDSGVYEM 9 Unmodified _SPDSGVYEM_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.703369140625 2 492.702583 983.390612 0.44331 0.00021842 -0.015708 -7.7393E-06 0.4276 0.00021068 492.70275553467417 38.523 0.31599 38.523 38.366 38.682 0 43 18 4 0 0 0 0.0090851 2 20637 20534;20637 85.357 49.313 1 12380000 59908 8296;16388 40049 40945 69736;69737 69737 -0.10174741104447094 SPDSGVYEM 9 Unmodified _SPDSGVYEM_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 984.39990234375 1 984.397889 983.390612 0.34087 0.00033556 -0.067841 -6.6782E-05 0.27303 0.00026877 984.3979751006502 38.545 0.29269 38.545 38.389 38.682 0 36 15 3 0 0 0 0.0095811 1 20635 20635 81.613 53.126 1 6223000 59909 8296;16388 40049 40945 69738 69738 -0.10174741104447094 SPDSGVYEM 9 Unmodified _SPDSGVYEM_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7030029296875 2 492.702583 983.390612 0.385 0.00018969 -0.25872 -0.00012747 0.12628 6.2218E-05 492.70266338000465 45.176 0.57066 40.324 40.036 40.607 -4.852 117 38 4 0 0 0 0.0090851 3 27648 27511;27648;27793 85.357 49.313 1 317680000 59910 8296;16388 40049 40945 69739;69740;69741 69740 -0.10174741104447094 SPDSGVYEM 9 Unmodified _SPDSGVYEM_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.3977661132812 1 984.397889 983.390612 0.40886 0.00040249 -0.20442 -0.00020123 0.20444 0.00020125 984.3978035697579 45.194 0.70257 40.342 40.069 40.772 -4.852 122 47 4 0 0 0 0.0026776 5 27670 27530;27635;27670;27813;27921 128.37 80.493 1 117080000 59911 8296;16388 40049 40945 69742;69743;69744;69745;69746 69744 -0.10174741104447094 SPDSLKNSL 9 Unmodified _SPDSLKNSL_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7526550292969 2 480.753464 959.492375 -0.23165 -0.00011137 -0.6012 -0.00028903 -0.83285 -0.0004004 480.7529275765907 30.812 0.18151 30.812 30.711 30.892 0 14 8 2 0 0 0 0.0014462 1 16022 16022 136.39 68.311 1 2400700 59912 2649 40050 40946 69747 69747 0.011008733096218748 SPDSLKNSL 9 Unmodified _SPDSLKNSL_ 0 0 0 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7533264160156 2 480.753464 959.492375 1.0866 0.00052238 -0.16112 -7.7457E-05 0.92548 0.00044493 480.7533288517405 35.04 0.35523 30.945 30.668 31.023 -4.0951 32 20 2 0 0 0 0.00030554 1 20187 20187 148.27 79.163 1 10099000 59913 2649 40050 40946 69748 69748 0.011008733096218748 SPDTAFSDP 9 Unmodified _SPDTAFSDP_ 0 0 0 REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1 REV__nc|ENSG00000107959|Q5JRX3-3|PITRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7041931152344 2 468.700897 935.387241 NaN NaN NaN NaN NaN NaN NaN 22.739 1 22.739 22.239 23.239 0 0 0 0 0.50124 1 11572 11572 15.847 3.3156 1 + 59914 18588 40051 40947 69749 69749 -0.08303667886798394 SPDTCWGCGP 10 Unmodified _SPDTCWGCGP_ 0 0 0 REV__ENSG00000088812|ENST00000262919|ATRN REV__ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.6911926269531 2 511.688952 1021.36335 0.37423 0.00019149 3.4931 0.0017874 3.8673 0.0019788 511.6906242730214 26.891 0.26793 23.854 23.717 23.985 -3.0365 17 13 2 0 0 0 0.16524 1 14840 14840 37.974 1.847 1 4564800 + 59915 17811 40052 40948 69750 69750 -0.1464754791646783 SPDTLRRVF 9 Unmodified _SPDTLRRVF_ 0 0 0 nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2 nc|ENSG00000161547|Q01130-2|SRSF2 nc|ENSG00000161547|Q01130-2|SRSF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2056579589844 3 364.204974 1089.59309 0.010377 3.7793E-06 0.62102 0.00022618 0.6314 0.00022996 364.20520750821163 38.067 0.26503 37.796 37.681 37.946 -0.27133 30 12 3 0 0 0 0.098164 1 20057 20057 33.445 19.04 1 2902100 59916 6794 40053 40949 69751 69751 0.05187950083131909 SPDTLRRVF 9 Unmodified _SPDTLRRVF_ 0 0 0 nc|ENSG00000161547|Q01130-2|SRSF2;ENSG00000161547|ENST00000359995|SRSF2 nc|ENSG00000161547|Q01130-2|SRSF2 nc|ENSG00000161547|Q01130-2|SRSF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2049560546875 3 364.204974 1089.59309 -0.12046 -4.3871E-05 0.035254 1.284E-05 -0.085203 -3.1031E-05 364.2050406059432 37.708 0.28887 37.725 37.592 37.881 0.01704 26 13 3 0 0 0 0.31356 1 20030 20030 16.566 3.0472 1 5166400 59917 6794 40053 40949 69752 69752 0.05187950083131909 SPDTPISTY 9 Unmodified _SPDTPISTY_ 0 0 0 ENST00000545754.5_1_3:152017288-152017384:+|nuORF ENST00000545754.5_1_3:152017288-152017384:+|nuORF ENST00000545754.5_1_3:152017288-152017384:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.9115600585938 2 490.732197 979.449842 0.57611 0.00028272 -0.93923 -0.00046091 -0.36311 -0.00017819 490.7318838592902 36.347 0.27771 36.347 36.229 36.507 0 22 13 2 0 0 0 0.087258 2 19251 19251;19277 36.044 12.896 1 3585200 59918 15099 40054 40950 69753;69754 69753 -0.04070521818607631 SPDTRVVRF 9 Unmodified _SPDTRVVRF_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 359.533203125 3 359.533091 1075.57744 -0.24715 -8.8858E-05 0.94536 0.00033989 0.69822 0.00025103 359.5334489308751 37.189 0.26499 36.917 36.774 37.039 -0.27133 26 10 3 0 0 0 0.12424 1 19522 19522 22.658 0 1 4033000 59919 2300 40055 40951 69755 69755 0.04267663566088231 SPDTRVVRF 9 Unmodified _SPDTRVVRF_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.5339050292969 3 359.533091 1075.57744 -0.33629 -0.00012091 0.93859 0.00033745 0.6023 0.00021655 359.5335413965788 36.831 0.29961 36.853 36.727 37.026 0.021545 30 13 3 0 0 0 0.14 1 19531 19531 21.59 0 1 4068800 59920 2300 40055 40951 69756 69756 0.04267663566088231 SPDTRVVRF 9 Unmodified _SPDTRVVRF_ 0 0 0 nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3 nc|ENSG00000105289|O95049-5|TJP3 nc|ENSG00000105289|O95049-5|TJP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.532958984375 3 359.533091 1075.57744 1.3393 0.00048154 -0.077664 -2.7923E-05 1.2617 0.00045362 359.5330970403382 41.19 0.39917 36.582 36.339 36.738 -4.6079 57 24 3 0 0 0 0.14 1 24649 24649 21.59 0 1 18586000 59921 2300 40055 40951 69757 69757 0.04267663566088231 SPDVKRCLNAL 11 Carbamidomethyl (C) _SPDVKRC(Carbamidomethyl (C))LNAL_ SPDVKRC(1)LNAL SPDVKRC(43)LNAL 0 1 0 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.8965759277344 3 424.895812 1271.66561 0.91229 0.00038763 -0.19774 -8.4018E-05 0.71455 0.00030361 424.8957387632846 42.226 0.35814 37.541 37.351 37.709 -4.6846 52 22 3 0 0 0 0.096911 1 25465 25465 42.835 15.706 1 30709000 59922 7654 40056 40952 69758 69758 743 0.040639160944010655 SPDVKRCLNAL 11 Carbamidomethyl (C) _SPDVKRC(Carbamidomethyl (C))LNAL_ SPDVKRC(1)LNAL SPDVKRC(48)LNAL 0 1 0 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 nc|ENSG00000167674|Q7Z4V5-2|HDGFL2 MSMS AL20221201_MKP_PDAC_01 4 636.8419189453125 2 636.840079 1271.66561 NaN NaN NaN NaN NaN NaN NaN 42.338 1 37.653 37.153 38.153 -4.6846 0 0 0 0.11833 1 25564 25564 47.732 11.605 1 59923 7654 40056 40952 69759 69759 743 0.040639160944010655 SPDVTSILLTY 11 Unmodified _SPDVTSILLTY_ 0 0 0 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 ENSG00000198743|ENST00000381151|SLC5A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8255004882812 2 604.824086 1207.63362 0.43669 0.00026412 0.46201 0.00027943 0.8987 0.00054356 604.8243490870032 88.513 0.37447 88.009 87.805 88.18 -0.50423 41 16 3 0 0 0 0.088819 2 48462 48361;48462 43.772 36.163 1 1537300 59924 10139 40057 40953 69760;69761 69761 0.038108268922542265 SPDWRRLAL 9 Unmodified _SPDWRRLAL_ 0 0 0 ENST00000496978.5_1_4:154125600-154143423:+|nuORF;ENST00000479711.5_1_4:154125600-154191533:+|nuORF ENST00000496978.5_1_4:154125600-154143423:+|nuORF ENST00000496978.5_1_4:154125600-154143423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8772277832031 3 371.876969 1112.60908 0.020354 7.5691E-06 -0.31111 -0.00011569 -0.29076 -0.00010813 371.8766685602249 55.306 0.53794 55.237 54.939 55.477 -0.068741 61 26 3 0 0 0 0.07916 2 29996 29996;30096 28.495 9.7733 1 8096700 59925 14045 40058 40954 69762;69763 69762 0.05727656320027563 SPDWRRLAL 9 Unmodified _SPDWRRLAL_ 0 0 0 ENST00000496978.5_1_4:154125600-154143423:+|nuORF;ENST00000479711.5_1_4:154125600-154191533:+|nuORF ENST00000496978.5_1_4:154125600-154143423:+|nuORF ENST00000496978.5_1_4:154125600-154143423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3116455078125 2 557.311815 1112.60908 0.34931 0.00019468 -0.87968 -0.00049026 -0.53037 -0.00029558 557.3107496968706 55.293 0.2797 55.224 55.097 55.377 -0.068737 21 13 3 0 0 0 0.30562 1 30042 30042 16.942 6.1184 1 1451700 59926 14045 40058 40954 69764 69764 0.05727656320027563 SPDYHRTL 8 Unmodified _SPDYHRTL_ 0 0 0 REV__ENSG00000164037|ENST00000296422|SLC9B1 REV__ENSG00000164037|ENST00000296422|SLC9B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 989.24072265625 1 988.48467 987.477394 2.3449 0.0023179 2.8719 0.0028388 5.2168 0.0051567 988.4879328607988 94.643 0.12731 94.658 94.568 94.695 0.014244 6 4 2 0 0 0 0.79783 1 52583 52583 7.9102 0.62092 1 1929200 + 59927 21852 40059 40955 69765 69765 -0.016845737677158468 SPEDFVFQF 9 Unmodified _SPEDFVFQF_ 0 0 0 ENST00000487676.1_1_6:32632488-32634384:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1 ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENST00000487676.1_1_6:32632488-32634384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2572021484375 2 558.25584 1114.49713 0.4149 0.00023162 1.2725 0.00071039 1.6874 0.00094201 558.2565717352502 92.83 0.35303 92.83 92.672 93.025 0 60 23 3 0 0 0 0.30562 2 51384 51287;51384 16.942 10.219 1 1225500 59928 8829 40060 40956 69766;69767 69767 -0.05554242547600552 SPEDFVFQF 9 Unmodified _SPEDFVFQF_ 0 0 0 ENST00000487676.1_1_6:32632488-32634384:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1 ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENST00000487676.1_1_6:32632488-32634384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2569580078125 2 558.25584 1114.49713 0.60542 0.00033798 1.3865 0.00077403 1.9919 0.001112 558.2566334600299 93.4 0.4944 92.943 92.637 93.131 -0.4574 56 21 4 0 0 0 0.026094 2 51068 50969;51068 57.471 47.397 1 3689700 59929 8829 40060 40956 69768;69769 69769 -0.05554242547600552 SPEDFVFQF 9 Unmodified _SPEDFVFQF_ 0 0 0 ENST00000487676.1_1_6:32632488-32634384:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1 ENST00000487676.1_1_6:32632488-32634384:-|nuORF ENST00000487676.1_1_6:32632488-32634384:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 558.25584 1114.49713 2.0233 0.0011295 -0.032123 -1.7933E-05 1.9912 0.0011116 558.2558515651532 92.904 0.2294 92.927 92.823 93.052 0.022987 0.027166 -0.001291 NaN 57.471 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1640400 59930 8829 40060 40956 -0.05554242547600552 SPEDFVYQF 9 Unmodified _SPEDFVYQF_ 0 0 0 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 nc|ENSG00000179344|P01920|HLA-DQB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2528076171875 2 566.253297 1130.49204 0.43935 0.00024878 -3.4826 -0.001972 -3.0432 -0.0017232 566.2512081043939 75.038 0.1793 75.038 74.948 75.128 0 13 9 2 0 0 0 0.14602 2 41743 41721;41743 28.487 15.955 1 681900 59931 16420 40061 40957 69770;69771 69771 -0.0679854641023212 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8530883789062 3 350.853718 1049.53933 -0.43081 -0.00015115 0.03101 1.088E-05 -0.3998 -0.00014027 350.8537050372481 19.929 0.25778 19.929 19.789 20.046 0 96 28 4 0 0 0 0.05483 2 9952 9952;10051 35.612 26.068 1 19786000 59932 2387 40062 40958 69772;69773 69772 0.016537328607682866 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7767944335938 2 525.776939 1049.53933 -0.074643 -3.9246E-05 -0.41895 -0.00022028 -0.4936 -0.00025952 525.7767175166082 19.926 0.2282 19.926 19.801 20.029 0 69 25 3 0 0 0 0.010301 1 9964 9964 79.596 39.647 1 6585100 59933 2387 40062 40958 69774 69774 0.016537328607682866 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.8551330566406 3 350.853718 1049.53933 -0.010769 -3.7785E-06 1.7888 0.00062761 1.7781 0.00062384 350.8541056416304 19.894 0.1677 19.902 19.779 19.946 0.0078506 20 8 3 0 0 0 0.15471 1 10103 10103 26.021 15.87 1 1177400 59934 2387 40062 40958 69775 69775 0.016537328607682866 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.77880859375 2 525.776939 1049.53933 0.067449 3.5463E-05 0.49807 0.00026187 0.56552 0.00029734 525.7776579939128 19.884 0.1297 19.892 19.801 19.93 0.0078487 10 6 2 0 0 0 0.28023 1 10138 10138 18.146 8.0724 1 525370 59935 2387 40062 40958 69776 69776 0.016537328607682866 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7771606445312 2 525.776939 1049.53933 0.77234 0.00040608 0.42623 0.0002241 1.1986 0.00063018 525.7769881363763 22.223 0.33635 19.489 19.32 19.657 -2.7348 45 17 3 0 0 0 0.0093064 2 12015 11909;12015 83.429 43.479 1 11352000 59936 2387 40062 40958 69777;69778 69778 0.016537328607682866 SPEDIKKAY 9 Unmodified _SPEDIKKAY_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENSG00000179407|ENST00000319153|DNAJB8;ENSG00000172404|ENST00000307221|DNAJB7 nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8542175292969 3 350.853718 1049.53933 1.4336 0.000503 0.31783 0.00011151 1.7515 0.00061451 350.85376564848474 22.231 0.41282 19.496 19.32 19.733 -2.7348 67 21 4 0 0 0 0.023481 2 11960 11960;12065 63.227 29.783 1 42848000 59937 2387 40062 40958 69779;69780 69779 0.016537328607682866 SPEEGARVY 9 Unmodified _SPEEGARVY_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;ENST00000587715.1_1_19:55598611-55598979:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2429809570312 2 504.243264 1006.47197 0.036001 1.8153E-05 -0.45081 -0.00022732 -0.41481 -0.00020917 504.24299336070527 21.743 0.5927 21.743 21.443 22.035 0 284 83 5 0 0 0 0.0082475 3 10985 10885;10985;11088 92.653 21.52 1 114900000 59938 4289 40063 40959 69781;69782;69783 69782 -0.031002973501813358 SPEEGARVY 9 Unmodified _SPEEGARVY_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;ENST00000587715.1_1_19:55598611-55598979:+|nuORF ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2434387207031 2 504.243264 1006.47197 0.27165 0.00013698 0.53759 0.00027107 0.80924 0.00040805 504.24335063174647 24.598 0.45849 21.715 21.445 21.904 -2.8831 76 25 4 0 0 0 0.0082475 2 13296 13296;13404 92.653 11.396 1 151540000 59939 4289 40063 40959 69784;69785 69784 -0.031002973501813358 SPEELARKY 9 Unmodified _SPEELARKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8611145019531 3 364.860984 1091.56112 -0.35967 -0.00013123 1.3061 0.00047655 0.94645 0.00034532 364.8612060580193 24.134 0.38076 24.134 23.893 24.274 0 64 20 4 0 0 0 0.076472 2 12245 12245;12346 38.615 20.581 1 17069000 59940 263 40064 40960 69786;69787 69786 0.01900537609321873 SPEELARKY 9 Unmodified _SPEELARKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7882690429688 2 546.787838 1091.56112 -0.16393 -8.9637E-05 0.19881 0.00010871 0.034874 1.9069E-05 546.7873660617494 24.146 0.23492 24.146 23.955 24.19 0 24 11 3 0 0 0 0.044042 1 12298 12298 43.772 24.515 1 1272000 59941 263 40064 40960 69788 69788 0.01900537609321873 SPEELARKY 9 Unmodified _SPEELARKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8601684570312 3 364.860984 1091.56112 1.1925 0.00043509 1.0037 0.00036623 2.1962 0.00080131 365.1958127937499 26.879 0.41529 23.843 23.57 23.985 -3.0365 64 21 4 0 0 0 0.018061 2 14763 14763;14880 65.474 33.436 1 51272000 59942 263 40064 40960 69789;69790 69789 0.01900537609321873 SPEELARKY 9 Unmodified _SPEELARKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7886962890625 2 546.787838 1091.56112 0.46115 0.00025215 1.1374 0.00062189 1.5985 0.00087404 547.2902457576279 26.872 0.37646 23.836 23.609 23.985 -3.0365 38 19 3 0 0 0 0.0093238 1 14804 14804 90.135 65.144 1 13238000 59943 263 40064 40960 69791 69791 0.01900537609321873 SPEELNRY 8 Unmodified _SPEELNRY_ 0 0 0 nc|ENSG00000131096|P10082-2|PYY;ENSG00000131096|ENST00000692052|PYY nc|ENSG00000131096|P10082-2|PYY nc|ENSG00000131096|P10082-2|PYY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2432861328125 2 504.243264 1006.47197 -0.6868 -0.00034631 0.62815 0.00031674 -0.058649 -2.9573E-05 504.24360717264744 21.633 0.18114 21.661 21.568 21.75 0.028357 16 9 2 0 0 0 0.46677 1 10979 10979 37.974 3.5723 1 783500 59944 4299 40065 40961 69792 69792 -0.031002973501927045 SPEELNRY 8 Unmodified _SPEELNRY_ 0 0 0 nc|ENSG00000131096|P10082-2|PYY;ENSG00000131096|ENST00000692052|PYY nc|ENSG00000131096|P10082-2|PYY nc|ENSG00000131096|P10082-2|PYY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2435607910156 2 504.243264 1006.47197 0.21158 0.00010669 -0.27427 -0.0001383 -0.062687 -3.161E-05 504.2432646295993 21.594 0.72677 21.608 21.481 22.208 0.013796 94 52 3 0 0 0 0.54555 1 11030 11030 30.637 3.0077 1 8359800 59945 4299 40065 40961 69793 69793 -0.031002973501927045 SPEELPMDF 9 Unmodified _SPEELPMDF_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.4927673339844 3 355.491681 1063.45321 0.89153 0.00031693 0.73372 0.00026083 1.6253 0.00057776 355.4919564178313 85.505 0.47156 79.33 79.075 79.547 -6.1757 44 28 2 0 0 0 0.41742 1 56295 56295 7.609 0 1 22494000 + 59946 17670 40066 40962 69794 69794 -0.07597595036259008 SPEELRLEY 9 Unmodified _SPEELRLEY_ 0 0 0 ENSG00000136243|ENST00000258742|NUP42;nc|ENSG00000136243|O15504-2|NUP42;ENST00000487595.1_7:23221671-23236000:+|nuORF ENSG00000136243|ENST00000258742|NUP42 ENSG00000136243|ENST00000258742|NUP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2852172851562 2 568.285128 1134.5557 0.40874 0.00023228 0.22336 0.00012693 0.63209 0.00035921 568.2852148447528 49.148 0.28782 49.148 48.969 49.256 0 35 13 4 0 0 0 0.01085 1 27009 27009 78.06 41.554 1 7961400 59947 4804 40067 40963 69795 69795 -0.00619185973164349 SPEELYRVF 9 Unmodified _SPEELYRVF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2901611328125 2 570.290214 1138.56587 0.60042 0.00034241 -0.1481 -8.446E-05 0.45232 0.00025795 570.2900530033847 60.896 0.49238 60.896 60.603 61.095 0 63 20 4 0 0 0 0.0082353 1 33975 33975 96.111 59.984 1 14762000 59948 1846 40068 40964 69796 69796 0.0021342175209611014 SPEELYRVF 9 Unmodified _SPEELYRVF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2908325195312 2 570.290214 1138.56587 -0.0012997 -7.4122E-07 1.349 0.00076933 1.3477 0.00076859 570.2905999168289 61.41 0.50401 60.921 60.654 61.158 -0.48932 90 23 5 0 0 0 0.0082475 3 33467 33369;33467;33568 103.35 55.605 1 54566000 59949 1846 40068 40964 69797;69798;69799 69798 0.0021342175209611014 SPEELYRVF 9 Unmodified _SPEELYRVF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2914428710938 2 570.290214 1138.56587 0.34453 0.00019648 1.0654 0.00060756 1.4099 0.00080404 570.2908676656298 61.004 0.25902 60.961 60.825 61.084 -0.04351 21 12 2 0 0 0 0.028475 1 33311 33311 56.177 21.245 1 3755300 59950 1846 40068 40964 69800 69800 0.0021342175209611014 SPEELYRVF 9 Unmodified _SPEELYRVF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.29052734375 2 570.290214 1138.56587 0.65546 0.0003738 0.32032 0.00018267 0.97578 0.00055648 570.2903439729112 66.791 0.79826 60.615 60.332 61.13 -6.1757 105 44 3 0 0 0 0.0059585 1 43454 43454 114.65 49.414 1 177450000 59951 1846 40068 40964 69801 69801 0.0021342175209611014 SPEEMEIPF 9 Unmodified _SPEEMEIPF_ 0 0 0 ENST00000360085.6_1_17:42043665-42081769:-|nuORF ENST00000360085.6_1_17:42043665-42081769:-|nuORF ENST00000360085.6_1_17:42043665-42081769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7413940429688 2 539.741708 1077.46886 0.24175 0.00013048 -0.29458 -0.000159 -0.052834 -2.8517E-05 539.741554271171 77.544 0.50609 77.544 77.265 77.771 0 122 36 4 0 0 0 0.41742 1 43149 43149 11.64 11.64 1 40287000 59952 12158 40069 40965 69802 69802 -0.0667730851921533 SPEEMEIPF 9 Unmodified _SPEEMEIPF_ 0 0 0 ENST00000360085.6_1_17:42043665-42081769:-|nuORF ENST00000360085.6_1_17:42043665-42081769:-|nuORF ENST00000360085.6_1_17:42043665-42081769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1634521484375 3 360.163564 1077.46886 -0.8428 -0.00030355 0.96687 0.00034823 0.12407 4.4686E-05 360.16395508761195 77.975 0.51961 77.492 77.215 77.735 -0.4826 100 36 3 0 0 0 0.39863 2 42715 42605;42715 8.1555 0 1 27703000 59953 12158 40069 40965 69803;69804 69804 -0.0667730851921533 SPEERLQRL 9 Unmodified _SPEERLQRL_ 0 0 0 nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5435180664062 3 376.543767 1126.60947 -0.65468 -0.00024651 3.4903 0.0013142 2.8356 0.0010677 376.54448433603426 27.258 0.28158 27.258 27.096 27.377 0 29 13 3 0 0 0 0.20428 1 14024 14024 16.566 4.3911 1 3188600 59954 4595 40070 40966 69805 69805 0.05123031249240739 SPEERLQRL 9 Unmodified _SPEERLQRL_ 0 0 0 nc|ENSG00000134326|Q5EBM0-4|CMPK2;ENSG00000134326|ENST00000256722|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 nc|ENSG00000134326|Q5EBM0-4|CMPK2 MSMS AL20221201_MKP_PDAC_01 4 376.5452880859375 3 376.543767 1126.60947 NaN NaN NaN NaN NaN NaN NaN 30.354 1 26.857 26.357 27.357 -3.497 0 0 0 0.22437 1 17128 17128 21.59 7.372 1 59955 4595 40070 40966 69806 69806 0.05123031249240739 SPEERVRAL 9 Unmodified _SPEERVRAL_ 0 0 0 ENSG00000138134|ENST00000371926|STAMBPL1;nc|ENSG00000138134|Q96FJ0-2|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 ENSG00000138134|ENST00000371926|STAMBPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8645629882812 3 352.864729 1055.57236 -0.31083 -0.00010968 -0.11971 -4.2243E-05 -0.43055 -0.00015192 352.86469429225065 23.671 0.26221 23.671 23.529 23.791 0 25 13 3 0 0 0 0.11005 1 12064 12064 32.037 3.543 1 1825200 59956 5023 40071 40967 69807 69807 0.046793597034593404 SPEEVEVFDY 10 Unmodified _SPEEVEVFDY_ 0 0 0 REV__nc|ENSG00000145431|Q9NRA1-3|PDGFC REV__nc|ENSG00000145431|Q9NRA1-3|PDGFC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.2650756835938 2 607.266601 1212.51865 -0.051627 -3.1352E-05 0.82363 0.00050016 0.772 0.00046881 607.2673073236399 63.097 0.63046 63.097 62.774 63.405 0 41 26 3 0 0 0 0.60623 1 35139 35139 10.824 2.0785 1 944850 + 59957 20776 40072 40968 69808 69808 -0.07910902309527046 SPEEVFREF 9 Unmodified _SPEEVFREF_ 0 0 0 ENST00000487855.1_1_2:220145378-220147307:+|nuORF;ENST00000480537.5_1_2:220144555-220146923:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF;ENSG00000135924|ENST00000336576|DNAJB2 ENST00000487855.1_1_2:220145378-220147307:+|nuORF ENST00000487855.1_1_2:220145378-220147307:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2723999023438 2 570.272021 1138.52949 0.63131 0.00036002 -1.5276 -0.00087117 -0.89634 -0.00051115 570.2714222090652 57.622 0.28204 57.622 57.49 57.772 0 23 14 2 0 0 0 0.013609 1 32063 32063 70.332 44.064 1 5460600 59958 4759 40073 40969 69809 69809 -0.03423455144616128 SPEEVFREF 9 Unmodified _SPEEVFREF_ 0 0 0 ENST00000487855.1_1_2:220145378-220147307:+|nuORF;ENST00000480537.5_1_2:220144555-220146923:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENST00000477917.5_1_2:220146297-220148118:+|nuORF;ENSG00000135924|ENST00000336576|DNAJB2 ENST00000487855.1_1_2:220145378-220147307:+|nuORF ENST00000487855.1_1_2:220145378-220147307:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 570.2730712890625 2 570.272021 1138.52949 NaN NaN NaN NaN NaN NaN NaN 63.796 1 57.621 57.121 58.121 -6.1757 0 0 0 0.041018 1 41278 41278 61.602 25.096 1 59959 4759 40073 40969 69810 69810 -0.03423455144616128 SPEGGLSVPGP 11 Unmodified _SPEGGLSVPGP_ 0 0 0 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 ENSG00000204439|ENST00000375911|C6orf47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7603759765625 2 498.753464 995.492375 -0.29402 -0.00014664 0.28986 0.00014457 -0.0041541 -2.0719E-06 498.75350217374006 26.478 0.46535 26.478 26.17 26.636 0 72 23 4 0 0 0 0.56638 1 13517 13517 13.042 0 1 50357000 59960 10284 40074 40970 69811 69811 -0.0055512669038080276 SPEGLKVFY 9 Unmodified _SPEGLKVFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2763671875 2 520.276575 1038.5386 0.20725 0.00010783 0.33698 0.00017532 0.54424 0.00028315 520.2767073901958 55.159 0.29165 54.681 54.528 54.82 -0.47798 44 13 4 0 0 0 0.0061223 1 29894 29894 114.2 64.269 1 24020000 59961 1378 40075 40971 69812 69812 0.020869382117098212 SPEGLKVFY 9 Unmodified _SPEGLKVFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7786254882812 2 520.276575 1038.5386 1.1599 0.00060346 -0.26282 -0.00013674 0.89707 0.00046672 520.276368011667 60.535 0.48767 54.387 54.142 54.63 -6.1478 63 25 3 0 0 0 0.0087923 2 38857 38857;38978 103.42 69.018 1 86740000 59962 1378 40075 40971 69813;69814 69813 0.020869382117098212 SPEGLKVFY 9 Unmodified _SPEGLKVFY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.276575 1038.5386 0.31626 0.00016454 1.0408 0.00054149 1.357 0.00070603 520.2770144076628 54.809 0.16057 54.742 54.644 54.804 -0.06694 0.13356 0.0011002 NaN 114.2 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2288500 59963 1378 40075 40971 0.020869382117098212 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.8284912109375 2 662.830234 1323.64592 0.15449 0.0001024 0.60636 0.00040192 0.76085 0.00050432 662.8304932738848 56.962 0.34826 56.962 56.786 57.135 0 48 14 4 0 0 0 8.4394E-07 2 31633 31633;31734 104.48 76.856 1 32242000 59964 5462 40076 40972 69815;69816 69815 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.8291015625 2 662.830234 1323.64592 0.46436 0.00030779 -1.0611 -0.00070335 -0.59678 -0.00039557 662.8295463756431 57.532 0.34667 57.042 56.88 57.226 -0.48974 45 16 3 0 0 0 0.0017085 2 31214 31214;31310 80.896 59.359 1 70118000 59965 5462 40076 40972 69817;69818 69817 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.8310546875 2 662.830234 1323.64592 1.0533 0.00069817 -0.16896 -0.00011199 0.88435 0.00058617 662.8298319049413 57.155 0.20302 57.089 56.998 57.201 -0.066036 16 9 2 0 0 0 0.070386 1 31123 31123 46.475 31.227 1 3507000 59966 5462 40076 40972 69819 69819 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8308715820312 2 662.830234 1323.64592 0.44644 0.00029591 0.76892 0.00050966 1.2154 0.00080557 662.8306887809856 63.275 0.55542 57.099 56.836 57.391 -6.1757 104 31 4 0 0 0 4.9562E-22 3 40766 40766;40892;41031 154.75 110.98 1 145410000 59967 5462 40076 40972 69820;69821;69822 69820 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8278198242188 2 662.830234 1323.64592 0.91631 0.00060736 -1.8369 -0.0012176 -0.92062 -0.00061022 662.8284228244341 63.762 0.45317 57.587 57.523 57.976 -6.1757 32 24 2 0 0 0 0.00099783 1 41341 41341 83.278 53.437 1 17077000 59968 5462 40076 40972 69823 69823 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8304443359375 2 662.830234 1323.64592 1.0462 0.00069348 0.17668 0.00011711 1.2229 0.00081059 662.8301843679901 64.377 0.73129 58.202 57.935 58.666 -6.1757 76 39 3 0 0 0 0.00076978 2 41761 41624;41761 85.764 58.136 1 29130000 59969 5462 40076 40972 69824;69825 69825 -0.00296136644692524 SPEGRLFQVEY 11 Unmodified _SPEGRLFQVEY_ 0 0 0 ENSG00000143106|ENST00000271308|PSMA5;ENST00000484563.1_1_1:109955653-109968973:-|nuORF ENSG00000143106|ENST00000271308|PSMA5 ENSG00000143106|ENST00000271308|PSMA5 MSMS AL20221201_MKP_PDAC_01 4 662.83056640625 2 662.830234 1323.64592 NaN NaN NaN NaN NaN NaN NaN 63.699 1 57.524 57.024 58.024 -6.1757 0 0 0 0.01862 1 41208 41208 72.59 43.508 1 59970 5462 40076 40972 69826 69826 -0.00296136644692524 SPEGRLYQVEY 11 Unmodified _SPEGRLYQVEY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000556167.1_1_14:35761682-35777333:+|nuORF;ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6 ENSG00000041357|ENST00000044462|PSMA4;ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.8274536132812 2 670.827692 1339.64083 -0.21095 -0.00014151 -0.36303 -0.00024353 -0.57398 -0.00038504 670.82731146159 43.777 0.3255 43.777 43.605 43.93 0 55 17 4 0 0 0 0.00076978 2 23756 23756;23865 85.764 57.27 1 430980000 59971 654;1887 40077 40973 69827;69828 69827 -0.015404405073468297 SPEGRLYQVEY 11 Unmodified _SPEGRLYQVEY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000556167.1_1_14:35761682-35777333:+|nuORF;ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6 ENSG00000041357|ENST00000044462|PSMA4;ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.3306884765625 2 670.827692 1339.64083 -0.041651 -2.794E-05 -0.31886 -0.0002139 -0.36051 -0.00024184 670.8275517473398 44 0.16353 43.685 43.611 43.774 -0.31585 17 11 2 0 0 0 0.0091632 1 23440 23440 68.76 51.317 1 55045000 59972 654;1887 40077 40973 69829 69829 -0.015404405073468297 SPEGRLYQVEY 11 Unmodified _SPEGRLYQVEY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000556167.1_1_14:35761682-35777333:+|nuORF;ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6 ENSG00000041357|ENST00000044462|PSMA4;ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.3286743164062 2 670.827692 1339.64083 0.54658 0.00036666 -0.26845 -0.00018009 0.27813 0.00018658 671.3290357298637 43.703 0.16351 43.688 43.617 43.78 -0.015667 12 7 2 0 0 0 0.016495 1 23446 23446 60.899 42.526 1 12800000 59973 654;1887 40077 40973 69830 69830 -0.015404405073468297 SPEGRLYQVEY 11 Unmodified _SPEGRLYQVEY_ 0 0 0 ENSG00000041357|ENST00000044462|PSMA4;ENST00000557929.5_1_15:78834269-78838932:+|nuORF;ENST00000556167.1_1_14:35761682-35777333:+|nuORF;ENST00000554843.5_1_14:35761682-35780127:+|nuORF;ENSG00000100902|ENST00000261479|PSMA6 ENSG00000041357|ENST00000044462|PSMA4;ENST00000554843.5_1_14:35761682-35780127:+|nuORF ENSG00000041357|ENST00000044462|PSMA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3284912109375 2 670.827692 1339.64083 0.9395 0.00063024 -0.81487 -0.00054664 0.12463 8.3604E-05 670.827316192841 49.525 0.6031 44.129 43.839 44.442 -5.3961 177 37 6 0 0 0 0.016495 3 30825 30825;30947;31070 60.899 43.457 1 1379900000 59974 654;1887 40077 40973 69831;69832;69833 69831 -0.015404405073468297 SPEIETLTI 9 Unmodified _SPEIETLTI_ 0 0 0 REV__ENSG00000139970|ENST00000267484|RTN1 REV__ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7713623046875 2 501.771322 1001.52809 0.41488 0.00020818 0.12737 6.391E-05 0.54225 0.00027208 501.77133612563705 76.186 0.39857 76.186 76.021 76.419 0 42 16 3 0 0 0 0.06187 3 42422 42291;42326;42422 42.095 5.8719 1 7881400 + 59975 20441 40078 40974 69834;69835;69836 69836 0.02738910766618119 SPEIETLTI 9 Unmodified _SPEIETLTI_ 0 0 0 REV__ENSG00000139970|ENST00000267484|RTN1 REV__ENSG00000139970|ENST00000267484|RTN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2731628417969 2 501.771322 1001.52809 0.41488 0.00020818 0.12737 6.391E-05 0.54225 0.00027208 501.77133612563705 76.186 0.39857 76.186 76.021 76.419 0 42 16 3 0 0 0 0.15672 1 42326 42326 20.454 7.9221 1 7881400 + 59976 20441 40078 40974 69837 69837 0.02738910766618119 SPEIETLTI 9 Unmodified _SPEIETLTI_ 0 0 0 REV__ENSG00000139970|ENST00000267484|RTN1 REV__ENSG00000139970|ENST00000267484|RTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7715759277344 2 501.771322 1001.52809 -0.41261 -0.00020704 0.75382 0.00037825 0.34121 0.00017121 501.77193568392755 76.667 0.23472 76.188 76.13 76.365 -0.47945 21 11 3 0 0 0 0.41742 1 41987 41987 11.64 3.047 1 578900 + 59977 20441 40078 40974 69838 69838 0.02738910766618119 SPEIETLTI 9 Unmodified _SPEIETLTI_ 0 0 0 REV__ENSG00000139970|ENST00000267484|RTN1 REV__ENSG00000139970|ENST00000267484|RTN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 501.771322 1001.52809 -0.41261 -0.00020704 0.75382 0.00037825 0.34121 0.00017121 501.77193568392755 76.667 0.23472 76.188 76.13 76.365 -0.47945 0.0011144 0.00055869 NaN 42.095 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 578900 + 59978 20441 40078 40974 0.02738910766618119 SPEKRKLAA 9 Unmodified _SPEKRKLAA_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7324829101562 2 500.300916 998.587279 -0.11266 -5.6362E-05 -0.60971 -0.00030504 -0.72237 -0.0003614 500.3005444611377 21.139 0.08625 21.139 21.062 21.149 0 23 16 2 0 0 0 0.20727 1 10648 10648 7.9102 3.1541 1 746580 59979 7937 40079 40975 69839 69839 0.08792851571456595 SPELAQRGH 9 Unmodified _SPELAQRGH_ 0 0 0 ENSG00000084463|ENST00000261167|WBP11 ENSG00000084463|ENST00000261167|WBP11 ENSG00000084463|ENST00000261167|WBP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.75732421875 2 497.756872 993.499192 NaN NaN NaN NaN NaN NaN NaN 74.345 1 74.345 73.845 74.845 0 0 0 0 0.84892 1 41371 41371 1.6526 0 1 59980 1388 40080 40976 69840 69840 0.002182309808631544 SPELFNLLSF 10 Unmodified _SPELFNLLSF_ 0 0 0 REV__ENSG00000124177|ENST00000373233|CHD6 REV__ENSG00000124177|ENST00000373233|CHD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3082885742188 2 583.808239 1165.60193 -0.57194 -0.0003339 0.58667 0.0003425 0.014729 8.5988E-06 583.8084236393966 78.272 0.61546 77.786 77.524 78.139 -0.48596 66 29 3 0 0 0 0.52888 1 42747 42747 14.838 0 1 3664000 + 59981 19423 40081 40977 69841 69841 0.02574878928930957 SPEMIGLET 9 Unmodified _SPEMIGLET_ 0 0 0 REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF REV__ENST00000234668.6_1_1:85647735-85666124:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.4692993164062 1 976.465574 975.458298 0.29716 0.00029017 -0.24086 -0.00023519 0.056306 5.4981E-05 976.465727935066 66.488 0.63657 60.312 60.009 60.646 -6.1757 101 35 4 0 0 0 0.30562 1 43222 43222 16.942 16.942 1 104120000 + 59982 17966 40082 40978 69842 69842 -0.030412911736448223 SPENLKRNV 9 Unmodified _SPENLKRNV_ 0 0 0 ENST00000398421.6_1_7:74188378-74193456:+|nuORF ENST00000398421.6_1_7:74188378-74193456:+|nuORF ENST00000398421.6_1_7:74188378-74193456:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.2056579589844 3 352.864729 1055.57236 1.178 0.00041568 0.42633 0.00015044 1.6044 0.00056612 352.8647532585275 26.553 0.32999 23.602 23.439 23.769 -2.9511 20 16 2 0 0 0 0.21021 1 14683 14683 7.609 0 1 10424000 59983 12850 40083 40979 69843 69843 0.046793597034593404 SPEPGQRTF 9 Unmodified _SPEPGQRTF_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7511291503906 2 509.751256 1017.48796 -0.055124 -2.81E-05 0.39225 0.00019995 0.33712 0.00017185 509.75126926160084 23.477 0.49391 23.477 23.182 23.676 0 61 24 4 0 0 0 0.012668 2 12002 11906;12002 72.968 24.622 1 25547000 59984 6445 40084 40980 69844;69845 69845 -0.020085911132809997 SPEPGQRTF 9 Unmodified _SPEPGQRTF_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7515563964844 2 509.751256 1017.48796 0.1402 7.1467E-05 0.27627 0.00014083 0.41647 0.0002123 509.7514373245146 26.317 0.37603 23.366 23.184 23.56 -2.9511 60 20 4 0 0 0 0.0061223 2 14423 14423;14540 114.2 65.856 1 62248000 59985 6445 40084 40980 69846;69847 69846 -0.020085911132809997 SPEPKPAP 8 Unmodified _SPEPKPAP_ 0 0 0 REV__nc|ENSG00000198053|P78324-4|SIRPA REV__nc|ENSG00000198053|P78324-4|SIRPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 822.4362182617188 1 822.435595 821.428318 -0.032362 -2.6616E-05 0.91976 0.00075644 0.8874 0.00072983 822.4363184614145 64.202 0.30161 64.202 64.022 64.324 0 20 12 2 0 0 0 0.78849 1 35756 35756 9.3474 0 1 1036900 + 59986 23984 40085 40981 69848 69848 0.010461379433309048 SPEPPNKHPL 10 Unmodified _SPEPPNKHPL_ 0 0 0 ENST00000588021.5_1_19:6007990-6026242:-|nuORF ENST00000588021.5_1_19:6007990-6026242:-|nuORF ENST00000588021.5_1_19:6007990-6026242:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 558.2978515625 2 558.29583 1114.57711 NaN NaN NaN NaN NaN NaN NaN 17.574 1 14.987 14.487 15.487 -2.5866 0 0 0 0.57227 1 9202 9202 22.736 1.1993 1 59987 15641 40086 40982 69849 69849 0.024402438462402642 SPEPSKIML 9 Oxidation (M) _SPEPSKIM(Oxidation (M))L_ SPEPSKIM(1)L SPEPSKIM(86)L 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2688293457031 2 509.267893 1016.52123 0.24286 0.00012368 -0.44882 -0.00022857 -0.20597 -0.00010489 509.26788630435374 40.123 0.2661 40.123 40.01 40.276 0 25 12 3 0 0 0 0.0090524 1 21543 21543 85.642 29.464 1 3377800 59988 6628;16309;16310 40087 40983 69850 69850 1159 0.013632746144025987 SPEPSPVTL 9 Unmodified _SPEPSPVTL_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.4813842773438 1 926.482939 925.475663 0.62484 0.0005789 0.028629 2.6525E-05 0.65347 0.00060543 926.4829210937384 49.847 0.29334 49.847 49.716 50.009 0 20 13 2 0 0 0 0.0026776 2 27443 27443;27546 128.37 64.129 1 1547800 59989 10112 40088 40984 69851;69852 69851 0.00994372423679124 SPEPSPVTL 9 Unmodified _SPEPSPVTL_ 0 0 0 ENSG00000198604|ENST00000360310|BAZ1A;nc|ENSG00000198604|Q9NRL2-2|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A ENSG00000198604|ENST00000360310|BAZ1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7455139160156 2 463.745108 925.475663 0.94636 0.00043887 -0.072722 -3.3725E-05 0.87363 0.00040514 463.7446686808201 49.84 0.38285 49.84 49.649 50.032 0 27 17 2 0 0 0 0.012148 1 27474 27474 74.423 30.016 1 2899600 59990 10112 40088 40984 69853 69853 0.00994372423679124 SPEPVFPPVL 10 Unmodified _SPEPVFPPVL_ 0 0 0 REV__ENST00000250916.5_1_19:1852736-1853027:-|nuORF REV__ENST00000250916.5_1_19:1852736-1853027:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.7530517578125 2 541.30005 1080.58555 0.95249 0.00051558 -0.9686 -0.0005243 -0.016109 -8.72E-06 541.3000165858062 87.62 0.86685 81.445 80.963 81.83 -6.1757 129 47 4 0 0 0 0.22149 1 57815 57815 14.838 0 1 138860000 + 59991 24880 40089 40985 69854 69854 0.04847797762840855 SPEQRALLY 9 Unmodified _SPEQRALLY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF;ENST00000585574.5_1_17:73837076-73839803:-|nuORF;ENST00000587504.5_1_17:73835995-73839803:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7907104492188 2 538.790381 1075.56621 0.2455 0.00013227 0.45424 0.00024474 0.69973 0.00037701 538.7901902756545 39.766 0.37812 39.766 39.595 39.973 0 43 18 3 0 0 0 0.011739 1 21327 21327 63.961 22.121 1 13400000 59992 1623 40090 40986 69855 69855 0.031448414719761786 SPEQRALLY 9 Unmodified _SPEQRALLY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF;ENST00000585574.5_1_17:73837076-73839803:-|nuORF;ENST00000587504.5_1_17:73835995-73839803:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.0369262695312 2 538.790381 1075.56621 0.43601 0.00023492 0.35382 0.00019064 0.78983 0.00042555 538.7904421764617 44.238 0.41562 39.386 39.232 39.648 -4.852 71 29 3 0 0 0 0.094176 1 27036 27036 37.075 6.4381 1 36843000 59993 1623 40090 40986 69856 69856 0.031448414719761786 SPEQSRNVL 9 Unmodified _SPEQSRNVL_ 0 0 0 ENSG00000198824|ENST00000361283|CHAMP1 ENSG00000198824|ENST00000361283|CHAMP1 ENSG00000198824|ENST00000361283|CHAMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.269775390625 2 515.269813 1028.52507 NaN NaN NaN NaN NaN NaN NaN 23.756 1 23.756 23.256 24.256 0 0 0 0 0.71962 1 12119 12119 8.7454 1.1365 1 59994 10163 40091 40987 69857 69857 0.011950804324669662 SPERKKRI 8 Unmodified _SPERKKRI_ 0 0 0 ENSG00000146247|ENST00000275034|PHIP;ENST00000479165.1_1_6:79650412-79665440:-|nuORF ENSG00000146247|ENST00000275034|PHIP ENSG00000146247|ENST00000275034|PHIP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7932434082031 2 507.314358 1012.61416 0.98532 0.00049986 -0.20329 -0.00010313 0.78202 0.00039673 507.31443138836465 40.722 0.38221 36.193 36.05 36.432 -4.5294 40 23 2 0 0 0 8.7369 1 24495 24495 8.5933 1.304 1 10352000 59995 5765 40092 40988 69858 69858 0.10835960182669169 SPESEGPIY 9 Unmodified _SPESEGPIY_ 0 0 0 ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF ENSG00000069329|ENST00000299138|VPS35 ENSG00000069329|ENST00000299138|VPS35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7234802246094 2 489.724372 977.434192 0.65123 0.00031892 -3.9156 -0.0019175 -3.2643 -0.0015986 489.72247288153517 36.433 0.27835 36.433 36.269 36.547 0 21 13 2 0 0 0 0.047196 1 19311 19311 46.021 24.274 1 2646400 59996 1001 40093 40989 69859 69859 -0.05542808335655991 SPESFESPPV 10 Unmodified _SPESFESPPV_ 0 0 0 REV__ENSG00000134954|ENST00000392668|ETS1 REV__ENSG00000134954|ENST00000392668|ETS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2493286132812 2 538.250754 1074.48696 -0.278 -0.00014963 -1.5989 -0.00086062 -1.8769 -0.0010103 538.2493035245005 48.797 0.47699 48.797 48.433 48.91 0 30 22 2 0 0 0 0.44373 1 26848 26848 19.257 4.4187 1 7335600 + 59997 20027 40094 40990 69860 69860 -0.047308502728583335 SPESFESPPV 10 Unmodified _SPESFESPPV_ 0 0 0 REV__ENSG00000134954|ENST00000392668|ETS1 REV__ENSG00000134954|ENST00000392668|ETS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.250754 1074.48696 0.2687 0.00014463 -2.7852 -0.0014992 -2.5165 -0.0013545 538.2483964792038 49.04 0.19555 48.668 48.539 48.734 -0.37172 -0.06472 -0.000868 NaN 19.257 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1402600 + 59998 20027 40094 40990 -0.047308502728583335 SPESGFELAGF 11 Unmodified _SPESGFELAGF_ 0 0 0 REV__ENST00000379225.2_1_9:33935729-33948657:-|nuORF REV__ENST00000379225.2_1_9:33935729-33948657:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.76416015625 2 570.764029 1139.5135 0.75856 0.00043296 -1.2484 -0.00071254 -0.48983 -0.00027958 570.7634234748979 73.339 0.32808 73.339 73.126 73.454 0 40 17 3 0 0 0 0.6249 1 40798 40798 10.074 0 1 7058000 + 59999 20208 40095 40991 69861 69861 -0.05067161381521146 SPESHVGVAW 10 Unmodified _SPESHVGVAW_ 0 0 0 nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS nc|ENSG00000160200|P35520-2|CBS nc|ENSG00000160200|P35520-2|CBS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2903442382812 2 534.759081 1067.50361 0.27726 0.00014827 0.056049 2.9973E-05 0.33331 0.00017824 534.7585287169743 47.1 0.12723 47.1 47.044 47.171 0 9 5 3 0 0 0 0.23634 1 25754 25754 6.7232 0 1 2269700 60000 6696 40096 40992 69862 69862 -0.027443045962399992 SPESPRKQSS 10 Unmodified _SPESPRKQSS_ 0 0 0 ENST00000567717.1_1_16:1728292-1742376:+|nuORF ENST00000567717.1_1_16:1728292-1742376:+|nuORF ENST00000567717.1_1_16:1728292-1742376:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.777099609375 2 551.778002 1101.54145 0.50819 0.00028041 0.090889 5.0151E-05 0.59908 0.00033056 551.7775767285364 92.635 0.42886 92.178 91.882 92.311 -0.4574 50 19 3 0 0 0 0.42068 1 50644 50644 20.454 0 1 4594000 60001 15445 40097 40993 69863 69863 -0.005258384014268813 SPETSRSLP 9 Unmodified _SPETSRSLP_ 0 0 0 ENST00000522965.1_1_8:90770176-90802641:+|nuORF;nc|ENSG00000104312|O43353-2|RIPK2;ENSG00000104312|ENST00000220751|RIPK2 ENST00000522965.1_1_8:90770176-90802641:+|nuORF ENST00000522965.1_1_8:90770176-90802641:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.251220703125 2 487.251089 972.487624 0.28922 0.00014092 -1.8258 -0.00088962 -1.5366 -0.0007487 487.2509086128838 26.289 0.17777 23.338 23.261 23.439 -2.9511 13 9 2 0 0 0 0.07087 1 14522 14522 39.95 0 1 4878200 60002 14761 40098 40994 69864 69864 0.0002798916684696451 SPEWPRKLVSY 11 Unmodified _SPEWPRKLVSY_ 0 0 0 nc|ENSG00000115486|P38435-2|GGCX;ENSG00000115486|ENST00000233838|GGCX nc|ENSG00000115486|P38435-2|GGCX nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.9132385253906 3 454.578588 1360.71394 0.74708 0.00033961 1.3215 0.00060072 2.0686 0.00094032 454.57908983625384 48.064 0.21516 48.026 47.907 48.122 -0.038643 23 10 3 0 0 0 0.33469 1 25915 25915 24.957 14.058 1 2016700 60003 3128 40099 40995 69865 69865 0.04800733005959046 SPEWWHPYL 9 Unmodified _SPEWWHPYL_ 0 0 0 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 REV__nc|ENSG00000164068|Q5XPI4-2|RNF123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8551025390625 3 405.525825 1213.55564 0.61326 0.00024869 -0.89677 -0.00036367 -0.28351 -0.00011497 405.52557074802337 17.674 0.57936 15.087 14.913 15.492 -2.5866 234 70 5 0 0 0 0.59218 1 9481 9481 0.96228 0 1 178710000 + 60004 29746 40100 40996 69866 69866 -0.04259141182478743 SPEYSHLAI 9 Unmodified _SPEYSHLAI_ 0 0 0 REV__nc|ENSG00000182866|P06239-3|LCK REV__nc|ENSG00000182866|P06239-3|LCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7556457519531 2 508.756007 1015.49746 0.30552 0.00015544 -1.2113 -0.00061628 -0.90582 -0.00046084 508.7554967671175 40.002 0.1769 40.002 39.912 40.089 0 16 8 3 0 0 0 0.39863 1 21511 21511 12.532 0 1 2082900 + 60005 23302 40101 40997 69867 69867 -0.009668228277746493 SPEYSHLAI 9 Unmodified _SPEYSHLAI_ 0 0 0 REV__nc|ENSG00000182866|P06239-3|LCK REV__nc|ENSG00000182866|P06239-3|LCK MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.756007 1015.49746 0.15511 7.8913E-05 0.43463 0.00022112 0.58974 0.00030003 508.75617928916273 40.295 0.27151 39.998 39.882 40.154 -0.29716 -0.0019036 8.6334E-05 NaN 12.532 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5852100 + 60006 23302 40101 40997 -0.009668228277746493 SPFARGNVF 9 Unmodified _SPFARGNVF_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7589416503906 2 497.758884 993.503215 1.1759 0.00058532 -2.6067 -0.0012975 -1.4308 -0.00071219 497.75744470129433 46.495 0.26463 46.462 46.307 46.572 -0.033417 19 12 2 0 0 0 0.023481 1 25009 25009 60.074 27.768 1 3099700 60007 2185 40102 40998 69868 69868 0.006203204745702351 SPFASEVSSY 10 Unmodified _SPFASEVSSY_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2430419921875 2 537.242929 1072.47131 -0.36836 -0.0001979 2.299 0.0012351 1.9307 0.0010372 537.2439800037749 48.526 0.30173 48.526 48.373 48.675 0 26 14 2 0 0 0 0.04925 1 26669 26669 58.679 38.225 1 4221800 60008 9016 40103 40999 69869 69869 -0.06203136789895325 SPFATTTKY 9 Unmodified _SPFATTTKY_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.258544921875 2 508.258382 1014.50221 -0.56702 -0.00028819 0.30597 0.00015551 -0.26104 -0.00013268 508.25831968628967 32.907 0.25726 32.907 32.772 33.029 0 39 12 4 0 0 0 0.0081887 1 17189 17189 93.166 49.308 1 14080000 60009 4180 40104 41000 69870 69870 -0.004459386850044211 SPFATTTKY 9 Unmodified _SPFATTTKY_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2579956054688 2 508.258382 1014.50221 -0.54715 -0.0002781 1.0212 0.00051903 0.47404 0.00024093 508.25881662147725 32.965 0.29491 32.806 32.664 32.959 -0.15918 28 11 3 0 0 0 0.0039711 1 17158 17158 121.53 77.676 1 12218000 60010 4180 40104 41000 69871 69871 -0.004459386850044211 SPFATTTKY 9 Unmodified _SPFATTTKY_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.25732421875 2 508.258382 1014.50221 0.13097 6.6567E-05 -0.03627 -1.8434E-05 0.0947 4.8132E-05 508.258075578917 32.822 0.16751 32.852 32.721 32.888 0.029743 12 7 2 0 0 0 0.0093064 1 17232 17232 83.429 45.278 1 3748800 60011 4180 40104 41000 69872 69872 -0.004459386850044211 SPFATTTKY 9 Unmodified _SPFATTTKY_ 0 0 0 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 ENSG00000130147|ENST00000392011|SH3BP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2592163085938 2 508.258382 1014.50221 1.0936 0.00055581 0.54245 0.0002757 1.636 0.00083151 508.2586189150772 37.153 0.52445 32.869 32.632 33.156 -4.2835 94 31 5 0 0 0 0.0081887 2 21724 21724;21859 103.42 67.292 1 75658000 60012 4180 40104 41000 69873;69874 69873 -0.004459386850044211 SPFCKNFLR 9 Unmodified _SPFCKNFLR_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486091.1_1_1:55203206-55207183:+|nuORF ENSG00000243725|ENST00000371281|TTC4 ENSG00000243725|ENST00000371281|TTC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.182373046875 3 371.195421 1110.56443 -0.26759 -9.9328E-05 1.9109 0.0007093 1.6433 0.00060997 371.1961270947937 34.2 0.13083 34.009 33.89 34.02 -0.19131 6 4 2 0 0 0 0.21819 1 17800 17800 1.0715 0 1 444540 60013 10714 40105 41001 69875 69875 0.013575091823440744 SPFEFDRY 8 Unmodified _SPFEFDRY_ 0 0 0 REV__ENSG00000159212|ENST00000349499|CLIC6 REV__ENSG00000159212|ENST00000349499|CLIC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.741943359375 2 530.740357 1059.46616 2.0761 0.0011019 1.2591 0.00066825 3.3352 0.0017701 530.7411817978765 100.12 0.24876 100.09 99.934 100.18 -0.036301 15 8 3 0 0 0 0.38756 1 55631 55631 45.7 9.6554 1 10357000 + 60014 21467 40106 41002 69876 69876 -0.06119395861855992 SPFEFGFTF 9 Unmodified _SPFEFGFTF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7483520507812 2 539.74765 1077.48075 2.0645 0.0011143 -2.3366 -0.0012612 -0.27207 -0.00014685 539.7463320209349 100.12 0.24997 100.09 99.989 100.24 -0.036301 27 8 5 0 0 0 0.019303 1 55613 55613 64.236 35.749 1 189750000 60015 2387 40107 41003 69877 69877 -0.05489323713709382 SPFEFGFTF 9 Unmodified _SPFEFGFTF_ 0 0 0 nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;ENST00000488001.5_1_7:157151266-157161444:+|nuORF;nc|ENSG00000105993|O75190-4|DNAJB6;ENST00000485817.1_1_3:125063303-125063474:-|nuORF nc|ENSG00000105993|O75190-2|DNAJB6 nc|ENSG00000105993|O75190-2|DNAJB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7481079101562 2 539.74765 1077.48075 1.0453 0.0005642 -0.4534 -0.00024472 0.5919 0.00031948 539.7473435566221 101.16 0.21795 94.988 94.907 95.125 -6.1757 38 13 4 0 0 0 0.012148 1 67804 67804 74.423 42.306 1 810290000 60016 2387 40107 41003 69878 69878 -0.05489323713709382 SPFEHQTY 8 Unmodified _SPFEHQTY_ 0 0 0 ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF ENSG00000100030|ENST00000215832|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.22607421875 2 504.724707 1007.43486 -0.36181 -0.00018261 0.25922 0.00013084 -0.10259 -5.1777E-05 504.724948487074 28.132 0.19381 28.132 28.057 28.251 0 26 10 4 0 0 0 0.34916 1 14509 14509 49.933 19.708 1 2775000 60017 2073;1743 40108 41004 69879 69879 -0.06855968895945352 SPFFERSGLAY 11 Unmodified _SPFFERSGLAY_ 0 0 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.314208984375 2 637.31422 1272.61389 -0.023003 -1.466E-05 -0.19763 -0.00012595 -0.22063 -0.00014061 637.3140542606625 58.383 0.24628 57.893 57.759 58.005 -0.49079 25 11 3 0 0 0 0.11866 1 31740 31740 41.347 32.371 1 3558000 60018 2691 40109 41005 69880 69880 -0.011515043278222947 SPFFERSGLAY 11 Unmodified _SPFFERSGLAY_ 0 0 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000530561.5_1_11:58294929-58321330:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.31396484375 2 637.31422 1272.61389 0.78787 0.00050212 -2.3322 -0.0014864 -1.5444 -0.00098425 637.312930866894 58.015 0.23794 57.949 57.815 58.053 -0.066032 25 11 3 0 0 0 0.11866 1 31577 31577 41.347 26.099 1 4645500 60019 2691 40109 41005 69881 69881 -0.011515043278222947 SPFFREAL 8 Unmodified _SPFFREAL_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7554626464844 2 483.75581 965.497067 0.060085 2.9066E-05 -0.64321 -0.00031116 -0.58313 -0.00028209 483.755440863933 55.816 0.28709 55.338 55.192 55.479 -0.47798 23 13 2 0 0 0 0.50364 1 30281 30281 34.402 7.5181 1 4392000 60020 8408 40110 41006 69882 69882 0.012938022430489582 SPFFSEDTF 9 Unmodified _SPFFSEDTF_ 0 0 0 nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7313842773438 2 538.732197 1075.44984 0.65358 0.00035211 -0.86037 -0.00046351 -0.20679 -0.0001114 538.7313579376724 73.299 0.30439 73.299 73.149 73.454 0 33 16 3 0 0 0 0.2143 1 40775 40775 21.747 10.632 1 1691600 60021 6127 40111 41007 69883 69883 -0.0848652181862235 SPFFSPIHL 9 Unmodified _SPFFSPIHL_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7792358398438 2 522.779285 1043.54402 0.33284 0.000174 -1.5277 -0.00079864 -1.1948 -0.00062463 522.7781982047494 78.668 0.36716 78.72 78.49 78.857 0.052452 42 14 4 0 0 0 0.0086179 1 43491 43491 89.427 25.19 1 7917500 60022 1710 40112 41008 69884 69884 0.023986617941773147 SPFFSPIHL 9 Unmodified _SPFFSPIHL_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.77978515625 2 522.779285 1043.54402 1.3381 0.00069955 0.04501 2.353E-05 1.3831 0.00072308 522.7793048218122 95.931 0.42292 89.755 89.584 90.007 -6.1757 44 25 2 0 0 0 0.010877 1 63615 63615 77.984 27.129 1 23631000 60023 1710 40112 41008 69885 69885 0.023986617941773147 SPFGDSPLF 9 Unmodified _SPFGDSPLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.4573364257812 1 966.456724 965.449448 0.8515 0.00082294 0.38211 0.00036929 1.2336 0.0011922 966.4568623524557 80.086 0.32704 79.596 79.428 79.755 -0.48933 26 12 3 0 0 0 0.0067112 2 43908 43812;43908 112.59 66.572 1 1580000 60024 2734 40113 41009 69886;69887 69887 -0.03465896747809438 SPFGDSPLF 9 Unmodified _SPFGDSPLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7327575683594 2 483.732 965.449448 1.0607 0.0005131 0.49152 0.00023777 1.5522 0.00075087 483.7322410216095 80.067 0.37663 79.577 79.403 79.779 -0.48933 32 14 3 0 0 0 0.06187 1 43820 43820 42.095 15.211 1 2504200 60025 2734 40113 41009 69888 69888 -0.03465896747809438 SPFGDSPLF 9 Unmodified _SPFGDSPLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 483.732 965.449448 0.27585 0.00013344 1.96 0.00094809 2.2358 0.0010815 483.73209221629406 79.608 0.31379 79.608 79.372 79.686 0 0.015525 0.0013507 NaN 42.095 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 385710 60026 2734 40113 41009 -0.03465896747809438 SPFHDIPIY 9 Unmodified _SPFHDIPIY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7744140625 2 544.7742 1087.53385 0.12446 6.7802E-05 -0.36941 -0.00020125 -0.24495 -0.00013344 544.7737141779068 62.085 0.65833 62.085 61.707 62.365 0 75 31 5 0 0 0 0.016184 2 34579 34579;34687 67.344 33.241 1 73710000 60027 8926 40114 41010 69889;69890 69889 -0.006419459310336606 SPFHDIPIY 9 Unmodified _SPFHDIPIY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7740478515625 2 544.7742 1087.53385 0.40171 0.00021884 -3.0494 -0.0016612 -2.6477 -0.0014424 544.7738189579377 62.56 0.59443 62.073 61.809 62.404 -0.48764 77 28 5 0 0 0 0.026094 2 34081 34081;34192 57.471 33.261 1 339620000 60028 8926 40114 41010 69891;69892 69891 -0.006419459310336606 SPFHDIPIY 9 Unmodified _SPFHDIPIY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.7740478515625 2 544.7742 1087.53385 0.29503 0.00016073 -0.22986 -0.00012522 0.065176 3.5506E-05 544.7737872030928 62.176 0.30751 62.144 61.985 62.292 -0.032787 30 15 3 0 0 0 0.026094 1 33950 33950 57.471 19.497 1 35030000 60029 8926 40114 41010 69893 69893 -0.006419459310336606 SPFHDIPIY 9 Unmodified _SPFHDIPIY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7734375 2 544.7742 1087.53385 0.54364 0.00029616 -0.061104 -3.3288E-05 0.48253 0.00026287 544.7738276110274 67.996 1.5259 61.821 61.236 62.762 -6.1757 242 88 5 0 0 0 0.016184 5 44227 44227;44367;44493;44648;44849 67.344 31.3 1 311150000 60030 8926 40114 41010 69894;69895;69896;69897;69898 69894 -0.006419459310336606 SPFHDIPIY 9 Unmodified _SPFHDIPIY_ 0 0 0 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 ENSG00000180817|ENST00000373232|PPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7735595703125 2 544.7742 1087.53385 0.71885 0.00039161 -1.3124 -0.00071496 -0.59354 -0.00032335 544.7735617929488 70.067 1.2206 63.891 63.153 64.374 -6.1757 173 67 4 0 0 0 0.016184 4 45580 45580;45697;45829;45951 67.344 29.193 1 235770000 60031 8926 40114 41010 69899;69900;69901;69902 69899 -0.006419459310336606 SPFHLQLEF 9 Unmodified _SPFHLQLEF_ 0 0 0 nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2879638671875 2 559.287474 1116.5604 0.90524 0.00050629 0.26544 0.00014846 1.1707 0.00065475 559.2876877699911 81.732 0.42867 81.236 81.015 81.443 -0.4952 37 16 3 0 0 0 0.20428 2 44724 44724;44822 22.736 11.912 1 2137900 60032 6532 40115 41011 69903;69904 69903 0.006777429603062046 SPFHLQLEF 9 Unmodified _SPFHLQLEF_ 0 0 0 nc|ENSG00000157617|Q9Y426-2|C2CD2;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 nc|ENSG00000157617|Q9Y426-2|C2CD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.287841796875 2 559.287474 1116.5604 1.1023 0.00061652 -0.17838 -9.9767E-05 0.92395 0.00051675 559.2874462444997 80.892 0.58092 80.95 80.677 81.258 0.057587 52 22 4 0 0 0 0.0090948 2 44775 44667;44775 85.272 39.251 1 13633000 60033 6532 40115 41011 69905;69906 69906 0.006777429603062046 SPFHRLLH 8 Unmodified _SPFHRLLH_ 0 0 0 ENSG00000126249|ENST00000246535|PDCD2L;ENST00000587385.6_1_19:34895335-34895721:+|nuORF ENSG00000126249|ENST00000246535|PDCD2L ENSG00000126249|ENST00000246535|PDCD2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2878723144531 2 503.782693 1005.55083 -0.432 -0.00021764 0.37618 0.00018951 -0.055825 -2.8124E-05 503.7827568947223 38.374 0.33186 38.087 37.93 38.262 -0.28687 64 14 6 0 0 0 0.80044 1 20268 20268 6.3541 0 1 24344000 60034 3937 40116 41012 69907 69907 0.04828019465412581 SPFHRNLFL 9 Unmodified _SPFHRNLFL_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5421142578125 3 377.541697 1129.60326 1.1444 0.00043206 0.10304 3.8902E-05 1.2474 0.00047096 377.5418334064445 50.43 0.34418 50.381 50.191 50.535 -0.048824 49 16 4 0 0 0 0.27545 2 27319 27219;27319 18.373 6.8552 1 20042000 60035 3425 40117 41013 69908;69909 69909 0.043645578083669534 SPFHRNLFL 9 Unmodified _SPFHRNLFL_ 0 0 0 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 ENSG00000119333|ENST00000372715|DYNC2I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8106079101562 2 565.808908 1129.60326 1.4436 0.00081682 0.68661 0.00038849 2.1302 0.0012053 565.8091486274747 50.432 0.32411 50.383 50.191 50.515 -0.048824 36 15 3 0 0 0 0.082934 1 27231 27231 32.786 12.332 1 5730500 60036 3425 40117 41013 69910 69910 0.043645578083669534 SPFKADIEM 9 Oxidation (M) _SPFKADIEM(Oxidation (M))_ SPFKADIEM(1) SPFKADIEM(110) 0 0 1 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.24951171875 2 527.2497 1052.48485 -0.25213 -0.00013293 -0.21966 -0.00011581 -0.47179 -0.00024875 527.2496812065816 34.55 0.44706 34.55 34.326 34.773 0 73 22 4 0 0 0 0.0061223 2 18271 18153;18271 114.2 48.967 1 154090000 60037 16209;15895 40118 41014 69911;69912 69912 1782 -0.03929602282300948 SPFKADIEM 9 Oxidation (M) _SPFKADIEM(Oxidation (M))_ SPFKADIEM(1) SPFKADIEM(100) 0 0 1 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.249267578125 2 527.2497 1052.48485 -0.37099 -0.00019561 0.52928 0.00027906 0.15829 8.3459E-05 527.2498579879721 34.707 0.28397 34.516 34.393 34.677 -0.19131 23 12 2 0 0 0 0.0087923 1 18122 18122 103.42 51.151 1 9004200 60038 16209;15895 40118 41014 69913 69913 1782 -0.03929602282300948 SPFKADIEM 9 Oxidation (M) _SPFKADIEM(Oxidation (M))_ SPFKADIEM(1) SPFKADIEM(40) 0 0 1 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2495727539062 2 527.2497 1052.48485 0.077781 4.101E-05 -0.25492 -0.00013441 -0.17714 -9.3395E-05 527.2496145098736 34.445 0.26078 34.472 34.367 34.628 0.027405 22 11 2 0 0 0 0.069655 1 18210 18210 40.239 16.219 1 1641800 60039 16209;15895 40118 41014 69914 69914 1782 -0.03929602282300948 SPFKADIEM 9 Oxidation (M) _SPFKADIEM(Oxidation (M))_ SPFKADIEM(1) SPFKADIEM(110) 0 0 1 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2499389648438 2 527.2497 1052.48485 0.72742 0.00038353 -0.91881 -0.00048444 -0.19139 -0.00010091 527.2495894625896 39.612 0.50979 35.162 34.876 35.385 -4.4509 123 31 5 0 0 0 0.0061279 3 23526 23389;23526;23664 114.19 45.082 1 233120000 60040 16209;15895 40118 41014 69915;69916;69917 69916 1782 -0.03929602282300948 SPFKADIEM 9 Unmodified _SPFKADIEM_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.25244140625 2 519.252243 1036.48993 0.75343 0.00039122 -0.03718 -1.9306E-05 0.71625 0.00037191 519.2523531136906 49.627 0.38 49.627 49.393 49.773 0 41 16 4 0 0 0 0.011291 1 27285 27285 76.825 32.966 1 21313000 60041 16209;15895 40118 41015 69918 69918 -0.02685298419692117 SPFKADIEM 9 Unmodified _SPFKADIEM_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2525024414062 2 519.252243 1036.48993 0.26421 0.00013719 0.34947 0.00018146 0.61367 0.00031865 519.2526582608092 56.108 0.60318 50.131 49.881 50.485 -5.9769 99 33 4 0 0 0 0.0093064 2 35826 35692;35826 83.429 41.589 1 442230000 60042 16209;15895 40118 41015 69919;69920 69920 -0.02685298419692117 SPFKADIEM 9 Unmodified _SPFKADIEM_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.252243 1036.48993 0.74522 0.00038696 0.40846 0.00021209 1.1537 0.00059905 519.2526454022902 50.073 0.30019 49.681 49.51 49.811 -0.3923 0.026829 0.00032871 NaN 76.825 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6258500 60043 16209;15895 40118 41015 -0.02685298419692117 SPFKDRDHF 9 Unmodified _SPFKDRDHF_ 0 0 0 ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;ENST00000517561.1_1_5:77417682-77436990:-|nuORF ENSG00000132842|ENST00000255194|AP3B1 ENSG00000132842|ENST00000255194|AP3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5205688476562 3 383.520962 1147.54106 -0.38959 -0.00014942 0.23385 8.9688E-05 -0.15573 -5.9728E-05 383.52086595553385 22.009 0.15252 22.009 21.929 22.082 0 21 14 2 0 0 0 0.20507 1 11184 11184 22.658 11.163 1 1328800 60044 4456 40119 41016 69921 69921 -0.026812133306293617 SPFKRQLSL 9 Unmodified _SPFKRQLSL_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3173217773438 2 538.316566 1074.61858 -0.11375 -6.1234E-05 0.62459 0.00033623 0.51084 0.00027499 538.3169218198718 37.432 0.2307 37.453 37.306 37.537 0.021545 28 10 3 0 0 0 0.013609 1 19844 19844 70.332 18.702 1 12876000 60045 4544;2292 40120 41017 69922 69922 0.08425424605570697 SPFKRQLSL 9 Unmodified _SPFKRQLSL_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2137451171875 3 359.213469 1074.61858 -0.20411 -7.3318E-05 0.70651 0.00025379 0.5024 0.00018047 359.21373898592566 37.408 0.29157 37.43 37.285 37.576 0.021545 40 13 4 0 0 0 0.1685 1 19925 19925 37.075 25.557 1 26923000 60046 4544;2292 40120 41017 69923 69923 0.08425424605570697 SPFKRQLSL 9 Unmodified _SPFKRQLSL_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2145385742188 3 359.213469 1074.61858 1.688 0.00060635 0.12008 4.3135E-05 1.8081 0.00064949 359.21356739576703 41.983 0.52419 37.299 37.051 37.575 -4.6846 85 33 4 0 0 0 0.069655 2 25209 25209;25343 34.222 12.632 1 75751000 60047 4544;2292 40120 41017 69924;69925 69924 0.08425424605570697 SPFKRQLSL 9 Unmodified _SPFKRQLSL_ 0 0 0 ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000557486.1_1_14:73748983-73753845:-|nuORF ENSG00000105245|ENST00000252891|NUMBL;nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3175048828125 2 538.316566 1074.61858 0.88155 0.00047455 0.34864 0.00018768 1.2302 0.00066223 538.3167171472193 41.976 0.39941 37.291 37.109 37.508 -4.6846 58 24 3 0 0 0 0.008513 2 25234 25234;25367 99.755 48.125 1 29696000 60048 4544;2292 40120 41017 69926;69927 69926 0.08425424605570697 SPFLSVHSSY 10 Unmodified _SPFLSVHSSY_ 0 0 0 ENSG00000149635|ENST00000279028|OCSTAMP ENSG00000149635|ENST00000279028|OCSTAMP ENSG00000149635|ENST00000279028|OCSTAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2725830078125 2 562.274564 1122.53457 0.098772 5.5537E-05 -2.8046 -0.0015769 -2.7058 -0.0015214 562.2726235200962 56.416 0.24241 56.416 56.322 56.564 0 23 10 3 0 0 0 0.62068 1 31400 31400 10.074 0 1 1132700 60049 6027 40121 41018 69928 69928 -0.021791512819845593 SPFLTITSM 9 Oxidation (M) _SPFLTITSM(Oxidation (M))_ SPFLTITSM(1) SPFLTITSM(67) 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7547302246094 2 506.754618 1011.49468 0.094619 4.7949E-05 -0.44216 -0.00022407 -0.34754 -0.00017612 506.7545372716705 63.022 0.42409 62.536 62.326 62.75 -0.48617 62 20 4 0 0 0 0.016184 2 34302 34302;34410 67.344 37.119 1 31077000 60050 7093 40122 41019 69929;69930 69929 1218 -0.010604142769125247 SPFLTITSM 9 Oxidation (M) _SPFLTITSM(Oxidation (M))_ SPFLTITSM(1) SPFLTITSM(93) 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7540893554688 2 506.754618 1011.49468 0.4589 0.00023255 -0.78909 -0.00039987 -0.33019 -0.00016733 506.75437786582074 62.627 0.37762 62.605 62.413 62.791 -0.021614 60 19 4 0 0 0 0.0082281 2 34179 34179;34292 92.822 44.476 1 33986000 60051 7093 40122 41019 69931;69932 69931 1218 -0.010604142769125247 SPFLTITSM 9 Oxidation (M) _SPFLTITSM(Oxidation (M))_ SPFLTITSM(1) SPFLTITSM(67) 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7546691894531 2 506.754618 1011.49468 0.81514 0.00041308 -0.60451 -0.00030634 0.21064 0.00010674 506.75458424818714 70.215 0.39642 64.04 63.828 64.224 -6.1757 41 22 2 0 0 0 0.016184 1 45867 45867 67.344 29.193 1 59723000 60052 7093 40122 41019 69933 69933 1218 -0.010604142769125247 SPFLTITSM 9 Unmodified _SPFLTITSM_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7568054199219 2 498.757161 995.499769 NaN NaN NaN NaN NaN NaN NaN 81.003 1 80.511 80.011 81.011 -0.49247 0 0 0 0.76439 1 44357 44357 7.2892 1.5288 1 60053 7093 40122 41020 69934 69934 0.0018388958569630631 SPFLTITSM 9 Unmodified _SPFLTITSM_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7579650878906 2 498.757161 995.499769 1.2877 0.00064227 -0.97208 -0.00048483 0.31566 0.00015744 498.7570630825609 88.356 0.78821 82.18 81.939 82.727 -6.1757 89 43 3 0 0 0 0.012148 3 58318 58184;58318;58449 74.423 40.32 1 60042000 60054 7093 40122 41020 69935;69936;69937 69936 0.0018388958569630631 SPFLTITSM 9 Unmodified _SPFLTITSM_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 996.5089111328125 1 996.507045 995.499769 1.0497 0.0010461 -1.3379 -0.0013332 -0.28814 -0.00028713 996.5060758895806 88.354 0.44815 82.178 81.993 82.441 -6.1757 41 24 2 0 0 0 0.008678 3 58188 58188;58312;58435 88.904 40.558 1 14429000 60055 7093 40122 41020 69938;69939;69940 69938 0.0018388958569630631 SPFMQKLGF 9 Oxidation (M) _SPFM(Oxidation (M))QKLGF_ SPFM(1)QKLGF SPFM(65)QKLGF 0 0 1 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7705688476562 2 535.770603 1069.52665 NaN NaN NaN NaN NaN NaN NaN 54.25 1 54.183 53.683 54.683 -0.066936 0 0 0 0.032808 1 29456 29456 65.235 25.278 1 60056 16367 40123 41021 69941 69941 1815 -0.0053300180311453005 SPFNLRHLF 9 Unmodified _SPFNLRHLF_ 0 0 0 ENST00000589222.5_2_17:58885406-58952036:+|nuORF ENST00000589222.5_2_17:58885406-58952036:+|nuORF ENST00000589222.5_2_17:58885406-58952036:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8095703125 2 565.808908 1129.60326 1.4436 0.00081682 0.68661 0.00038849 2.1302 0.0012053 565.8091486274747 50.432 0.32411 50.383 50.191 50.515 -0.048824 36 15 3 0 0 0 0.35911 1 27336 27336 14.838 1.7958 1 5730500 60057 15666 40124 41022 69942 69942 0.04364557808344216 SPFPAPHLGR 10 Unmodified _SPFPAPHLGR_ 0 0 0 REV__ENST00000485069.1_1_2:220336438-220336879:+|nuORF REV__ENST00000485069.1_1_2:220336438-220336879:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.1983947753906 3 360.197931 1077.57196 -0.083876 -3.0212E-05 0.97395 0.00035081 0.89007 0.0003206 360.1982903617237 37.935 0.35739 37.952 37.773 38.13 0.01704 41 16 3 0 0 0 0.62068 1 20149 20149 5.7834 0 1 12092000 + 60058 27770 40125 41023 69943 69943 0.03627984774266224 SPFPELEQF 9 Unmodified _SPFPELEQF_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2627563476562 2 547.263665 1092.51278 0.28327 0.00015503 0.3426 0.00018749 0.62587 0.00034252 547.2636990652983 80.639 0.32208 80.639 80.495 80.817 0 36 15 3 0 0 0 0.23158 1 44786 44786 20.454 6.9457 1 1298400 60059 6742 40126 41024 69944 69944 -0.029779560305769337 SPFPELEQF 9 Unmodified _SPFPELEQF_ 0 0 0 nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 nc|ENSG00000160688|Q8NFF5-3|FLAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2630615234375 2 547.263665 1092.51278 1.2387 0.00067787 -1.5539 -0.00085039 -0.31525 -0.00017252 547.2631006380159 88.179 0.38908 82.003 81.8 82.189 -6.1757 29 21 2 0 0 0 0.12424 1 58133 58133 30.637 10.183 1 9592500 60060 6742 40126 41024 69945 69945 -0.029779560305769337 SPFPGPDPGF 10 Unmodified _SPFPGPDPGF_ 0 0 0 ENSG00000163348|ENST00000368457|PYGO2 ENSG00000163348|ENST00000368457|PYGO2 ENSG00000163348|ENST00000368457|PYGO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2372436523438 2 509.23745 1016.46035 -0.20572 -0.00010476 1.8288 0.00093131 1.6231 0.00082655 509.2385940663133 66.024 0.13042 65.541 65.456 65.586 -0.48323 8 5 2 0 0 0 0.33553 1 36030 36030 25.399 11.493 1 1392600 60061 6981 40127 41025 69946 69946 -0.04722494373527297 SPFPSRVFM 9 Oxidation (M) _SPFPSRVFM(Oxidation (M))_ SPFPSRVFM(1) SPFPSRVFM(44) 0 0 1 nc|ENSG00000119977|Q6NUS6-2|TCTN3;ENSG00000119977|ENST00000371217|TCTN3;ENST00000478245.1_1_10:97452671-97453656:-|nuORF;nc|ENSG00000119977|Q6NUS6-4|TCTN3;nc|ENSG00000119977|Q6NUS6-5|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 nc|ENSG00000119977|Q6NUS6-2|TCTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2669677734375 2 542.268227 1082.5219 -0.14263 -7.7343E-05 0.08578 4.6516E-05 -0.056849 -3.0827E-05 542.2680389371156 51.28 0.53288 51.226 50.986 51.519 -0.053871 61 26 4 0 0 0 0.05447 1 27680 27680 43.858 14.777 1 5902100 60062 16156 40128 41026 69947 69947 1799 -0.016058859458780717 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.3349609375 2 688.335684 1374.65681 0.20972 0.00014436 -0.72912 -0.00050188 -0.5194 -0.00035752 688.837101703153 57.812 0.29635 57.812 57.716 58.012 0 26 12 3 0 0 0 0.37825 1 32172 32172 22.658 13.913 1 1011400 60063 8006 40129 41027 69948 69948 -0.015527342703990143 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 688.3357543945312 2 688.335684 1374.65681 0.20926 0.00014404 0.016986 1.1692E-05 0.22624 0.00015573 688.3357428633019 58.483 0.43384 57.992 57.759 58.193 -0.49079 65 20 5 0 0 0 4.5211E-07 2 31831 31731;31831 105.35 87.903 1 28988000 60064 8006 40129 41027 69949;69950 69950 -0.015527342703990143 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 688.3347778320312 2 688.335684 1374.65681 0.91916 0.00063269 -0.73591 -0.00050655 0.18325 0.00012614 688.3351188886392 58.096 0.23908 58.03 57.871 58.111 -0.066032 26 11 4 0 0 0 0.0065946 1 31628 31628 72.59 39.804 1 4657300 60065 8006 40129 41027 69951 69951 -0.015527342703990143 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.337158203125 2 688.335684 1374.65681 1.0276 0.00070737 -1.2497 -0.00086018 -0.22201 -0.00015282 688.334399162002 64.81 0.73059 58.635 58.167 58.897 -6.1757 93 40 3 0 0 0 5.3636E-75 3 42106 41834;41977;42106 216.43 178.26 1 35410000 60066 8006 40129 41027 69952;69953;69954 69954 -0.015527342703990143 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.335693359375 2 688.335684 1374.65681 0.34291 0.00023604 0.18244 0.00012558 0.52535 0.00036162 688.3358191749816 65.36 0.59436 59.185 58.884 59.478 -6.1757 83 33 3 0 0 0 1.177E-36 3 42516 42247;42379;42516 176.41 153.67 1 23443000 60067 8006 40129 41027 69955;69956;69957 69957 -0.015527342703990143 SPFQDQLHQLY 11 Unmodified _SPFQDQLHQLY_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556140.5_1_12:56748997-56753873:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MSMS AL20221201_MKP_PDAC_01 4 688.3356323242188 2 688.335684 1374.65681 NaN NaN NaN NaN NaN NaN NaN 65.723 1 59.547 59.047 60.047 -6.1757 0 0 0 0.0059653 1 42685 42685 77.049 54.312 1 60068 8006 40129 41027 69958 69958 -0.015527342703990143 SPFQPHVPY 9 Unmodified _SPFQPHVPY_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.26611328125 2 536.266542 1070.51853 0.24152 0.00012952 -1.7602 -0.00094396 -1.5187 -0.00081444 536.2652788259375 48.94 0.20897 48.568 48.464 48.673 -0.37172 18 10 2 0 0 0 0.044296 1 26302 26302 52.268 31.815 1 11390000 60069 6031 40130 41028 69959 69959 -0.013908127282320493 SPFQPHVPY 9 Unmodified _SPFQPHVPY_ 0 0 0 nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B nc|ENSG00000149657|Q9BX40-2|LSM14B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 536.266542 1070.51853 1.0851 0.00058189 -1.2939 -0.00069386 -0.20881 -0.00011198 536.2657997237957 54.351 0.34296 48.486 48.339 48.682 -5.8653 -0.040992 3.6432E-05 NaN 52.268 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 87636000 60070 6031 40130 41028 -0.013908127282320493 SPFQRRCL 8 Unmodified _SPFQRRCL_ 0 0 0 REV__nc|ENSG00000182872|P98175-4|RBM10 REV__nc|ENSG00000182872|P98175-4|RBM10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7667846679688 2 503.766186 1005.51782 NaN NaN NaN NaN NaN NaN NaN 23.766 1 23.779 23.279 24.279 0.012396 0 0 0 0.97348 1 12129 12129 5.7604 0 1 + 60071 23303 40131 41029 69960 69960 0.015280693510590027 SPFREPLIKF 10 Unmodified _SPFREPLIKF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.9048156738281 3 411.904524 1232.69174 0.13638 5.6177E-05 -0.20464 -8.4291E-05 -0.068253 -2.8114E-05 411.9046432543399 60.57 0.3147 60.527 60.393 60.708 -0.04351 26 15 3 0 0 0 0.044582 1 33020 33020 60.943 33.815 1 13718000 60072 9805 40132 41030 69961 69961 0.08470553328174901 SPFRFEISF 9 Unmodified _SPFRFEISF_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2882080078125 2 565.287474 1128.5604 0.75717 0.00042802 0.32407 0.00018319 1.0812 0.00061121 565.2875733507493 83.218 0.38863 83.282 83.077 83.465 0.063171 44 14 4 0 0 0 0.011291 2 45991 45991;46088 76.825 38.851 1 32114000 60073 2271 40133 41031 69962;69963 69962 0.001257429602674165 SPFRFEISF 9 Unmodified _SPFRFEISF_ 0 0 0 ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B ENSG00000105011|ENST00000263382|ASF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2881469726562 2 565.287474 1128.5604 1.4987 0.00084719 -1.0635 -0.00060118 0.43519 0.00024601 565.2868693250108 98.076 0.20458 91.9 91.781 91.985 -6.1757 40 12 4 0 0 0 0.0087807 1 64995 64995 106.94 60.919 1 277710000 60074 2271 40133 41031 69964 69964 0.001257429602674165 SPFRIKDSL 9 Unmodified _SPFRIKDSL_ 0 0 0 REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A REV__nc|ENSG00000173612|Q5T6X5-2|GPRC6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.869384765625 3 354.869591 1061.58694 1.1238 0.0003988 -0.35752 -0.00012687 0.76628 0.00027193 354.86950287511206 46.493 0.27175 41.412 41.23 41.502 -5.0805 47 29 2 0 0 0 0.078314 1 28673 28673 29.437 5.6361 1 62376000 + 60075 22741 40134 41032 69965 69965 0.058614318515992636 SPFRQHNY 8 Unmodified _SPFRQHNY_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.75 2 524.75159 1047.48863 -0.95619 -0.00050176 0.58081 0.00030478 -0.37537 -0.00019698 524.7517262861492 77.87 0.65282 77.387 77.082 77.735 -0.4826 109 41 4 0 0 0 0.74163 1 42525 42525 13.508 2.3934 1 33377000 + 60076 22604 40135 41033 69966 69966 -0.03321751673570361 SPFRSGTPM 9 Oxidation (M) _SPFRSGTPM(Oxidation (M))_ SPFRSGTPM(1) SPFRSGTPM(48) 0 0 1 ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A ENSG00000166166|ENST00000389749|TRMT61A MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2345275878906 2 498.234384 994.454216 0.29498 0.00014697 0.094315 4.6991E-05 0.3893 0.00019396 498.23439524412134 23.82 0.3681 20.993 20.791 21.159 -2.8273 37 22 2 0 0 0 0.044296 2 12967 12857;12967 47.594 30.652 1 9980500 60077 7443 40136 41034 69967;69968 69968 1281 -0.043233358766769925 SPFSFHHVL 9 Unmodified _SPFSFHHVL_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000589179.5_1_12:53590293-53590665:-|nuORF nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.519287109375 3 357.518781 1069.53451 0.1867 6.6749E-05 0.95188 0.00034031 1.1386 0.00040706 357.519083788708 49.059 0.26828 49.015 48.887 49.155 -0.043694 34 12 4 0 0 0 0.06187 1 26469 26469 38.176 30.567 1 9973300 60078 5172 40137 41035 69969 69969 0.002528935086729689 SPFSFHHVL 9 Unmodified _SPFSFHHVL_ 0 0 0 nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7;ENST00000589179.5_1_12:53590293-53590665:-|nuORF nc|ENSG00000139626|P26010-2|ITGB7 nc|ENSG00000139626|P26010-2|ITGB7 MSMS AL20221201_MKP_PDAC_01 4 357.5194396972656 3 357.518781 1069.53451 NaN NaN NaN NaN NaN NaN NaN 80.231 1 74.055 73.555 74.555 -6.1757 0 0 0 0.096036 1 52630 52630 39.95 21.803 1 60079 5172 40137 41035 69970 69970 0.002528935086729689 SPFSGLLHM 9 Oxidation (M) _SPFSGLLHM(Oxidation (M))_ SPFSGLLHM(1) SPFSGLLHM(67) 0 0 1 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7475891113281 2 502.747127 1003.4797 NaN NaN NaN NaN NaN NaN NaN 58.595 1 58.535 58.035 59.035 -0.060719 0 0 0 0.029091 1 31920 31920 67.344 36.707 1 60080 6096 40138 41036 69971 69971 1085 -0.021898613542475687 SPFSGLLHM 9 Unmodified _SPFSGLLHM_ 0 0 0 nc|ENSG00000151176|Q8NHP8-2|PLBD2;ENSG00000151176|ENST00000280800|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 nc|ENSG00000151176|Q8NHP8-2|PLBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7499084472656 2 494.74967 987.484787 0.7944 0.00039303 1.4009 0.00069307 2.1953 0.0010861 494.7497180739091 92.607 0.50802 86.431 86.149 86.657 -6.1757 40 30 2 0 0 0 0.010877 1 61357 61357 77.984 35.89 1 11621000 60081 6096 40138 41037 69972 69972 -0.009455574916387377 SPFSLLVEYT 10 Unmodified _SPFSLLVEYT_ 0 0 0 REV__nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 REV__nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2979125976562 2 578.300247 1154.58594 1.0267 0.00059372 -1.6793 -0.00097115 -0.65267 -0.00037744 578.2991329171243 48.576 0.48276 43.179 42.871 43.354 -5.3961 38 28 2 0 0 0 0.52659 1 30184 30184 22.736 8.8302 1 13296000 + 60082 22284 40139 41038 69973 69973 0.01483172692064727 SPFSRKLDL 9 Unmodified _SPFSRKLDL_ 0 0 0 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1 ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.86962890625 3 354.869591 1061.58694 -0.17746 -6.2974E-05 -0.044152 -1.5668E-05 -0.22161 -7.8642E-05 354.86955359147424 41.943 0.2481 41.934 41.794 42.042 -0.0088196 17 11 2 0 0 0 0.094149 1 22463 22463 32.037 2.6003 1 8872100 60083 16391;7104 40140 41039 69974 69974 0.05861431851622001 SPFTGPNF 8 Unmodified _SPFTGPNF_ 0 0 0 ENSG00000154646|ENST00000284885|TMPRSS15 ENSG00000154646|ENST00000284885|TMPRSS15 ENSG00000154646|ENST00000284885|TMPRSS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7059936523438 2 433.705786 865.397018 -0.28014 -0.0001215 -1.1582 -0.00050231 -1.4383 -0.00062381 433.7056556149964 34.008 0.22528 33.817 33.718 33.944 -0.19131 14 8 2 0 0 0 0.78849 1 17770 17770 9.3474 0.75416 1 759630 60084 6340 40141 41040 69975 69975 -0.041064350907618064 SPFTIPEAWE 10 Unmodified _SPFTIPEAWE_ 0 0 0 REV__nc|ENSG00000196792|Q13033-2|STRN3 REV__nc|ENSG00000196792|Q13033-2|STRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.783447265625 2 588.782222 1175.54989 0.51556 0.00030355 -0.25421 -0.00014968 0.26135 0.00015388 588.7820052985953 75.76 0.60265 75.283 75.084 75.686 -0.47714 51 26 4 0 0 0 0.44373 1 41621 41621 19.257 1.1106 1 5807600 + 60085 29884 40142 41041 69976 69976 -0.03086284484834323 SPFYGDKMNLY 11 Oxidation (M) _SPFYGDKM(Oxidation (M))NLY_ SPFYGDKM(1)NLY SPFYGDKM(79)NLY 0 0 1 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 ENSG00000151414|ENST00000367385|NEK7 MSMS AL20221201_MKP_PDAC_01 4 675.8056030273438 2 675.805371 1349.59619 NaN NaN NaN NaN NaN NaN NaN 51.168 1 45.519 45.019 46.019 -5.649 0 0 0 0.00087772 1 32175 32175 79.427 43.3 1 60086 6111 40143 41042 69977 69977 1089 -0.06462587645000895 SPFYPGKTTY 10 Unmodified _SPFYPGKTTY_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7843017578125 2 580.784764 1159.55498 0.30709 0.00017835 0.009273 5.3856E-06 0.31636 0.00018374 580.7847189509124 40.114 0.37869 39.817 39.649 40.028 -0.29716 54 17 4 0 0 0 0.052718 2 21159 21159;21260 57.249 36.795 1 25403000 60087 3820 40144 41043 69978;69979 69978 -0.018419806221800172 SPFYPGKTTY 10 Unmodified _SPFYPGKTTY_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.7855834960938 2 580.784764 1159.55498 0.77638 0.00045091 -0.14486 -8.4134E-05 0.63152 0.00036678 580.7844265670716 39.777 0.26757 39.782 39.647 39.915 0.0050545 32 12 3 0 0 0 0.13297 2 21151 21151;21255 41.956 21.502 1 6698300 60088 3820 40144 41043 69980;69981 69980 -0.018419806221800172 SPFYPGKTTY 10 Unmodified _SPFYPGKTTY_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7850952148438 2 580.784764 1159.55498 0.52002 0.00030202 0.15816 9.1857E-05 0.67818 0.00039387 580.7846891318321 44.974 0.50048 40.122 39.841 40.342 -4.852 100 33 4 0 0 0 0.10406 2 27435 27435;27579 45.74 20.341 1 113300000 60089 3820 40144 41043 69982;69983 69982 -0.018419806221800172 SPFYPGKTTY 10 Unmodified _SPFYPGKTTY_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 580.784764 1159.55498 0.23167 0.00013455 -1.3187 -0.00076587 -1.087 -0.00063132 580.7847131126923 39.719 0.25768 39.719 39.595 39.853 0 -0.14094 -0.0015118 NaN 57.249 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1708700 60090 3820 40144 41043 -0.018419806221800172 SPGAAQEKGQF 11 Unmodified _SPGAAQEKGQF_ 0 0 0 REV__ENSG00000163013|ENST00000520530|FBXO41 REV__ENSG00000163013|ENST00000520530|FBXO41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2686767578125 2 560.275095 1118.53564 -0.049552 -2.7763E-05 -2.4601 -0.0013783 -2.5097 -0.0014061 560.2730039600416 23.986 0.34838 23.986 23.771 24.119 0 24 16 2 0 0 0 0.66968 1 12184 12184 7.1017 1.8048 1 724370 + 60091 21717 40145 41044 69984 69984 -0.01888936913087491 SPGARLITI 9 Unmodified _SPGARLITI_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.28466796875 2 464.284734 926.554916 0.086413 4.012E-05 -0.39645 -0.00018407 -0.31004 -0.00014395 464.2845624221165 51.85 0.20679 51.416 51.325 51.531 -0.43367 17 10 2 0 0 0 0.053952 1 27994 27994 43.982 7.4756 1 2408800 60092 1629 40146 41045 69985 69985 0.0887006416847953 SPGARLITI 9 Unmodified _SPGARLITI_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2848510742188 2 464.284734 926.554916 -0.094035 -4.3659E-05 0.22858 0.00010613 0.13455 6.2469E-05 464.28465200183535 51.465 0.23586 51.411 51.342 51.578 -0.053871 16 11 2 0 0 0 0.053952 1 27877 27877 43.982 7.4756 1 2392600 60093 1629 40146 41045 69986 69986 0.0887006416847953 SPGDYAPE 8 Unmodified _SPGDYAPE_ 0 0 0 REV__ENSG00000011007|ENST00000613537|ELOA REV__ENSG00000011007|ENST00000613537|ELOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 835.347900390625 1 835.346839 834.339563 0.40976 0.00034229 0.28743 0.0002401 0.69719 0.0005824 835.3469475106433 45.174 0.41266 40.322 40.115 40.528 -4.852 44 27 2 0 0 0 0.46494 1 27577 27577 38.151 4.0487 1 18595000 + 60094 17051 40147 41046 69987 69987 -0.08423322086991902 SPGEGPPHPEL 11 Unmodified _SPGEGPPHPEL_ 0 0 0 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 REV__nc|ENSG00000108375|Q68DV7-3|RNF43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7695922851562 2 558.769645 1115.52474 0.46541 0.00026006 -0.010409 -5.8164E-06 0.455 0.00025424 558.7697310077722 35.985 0.23867 35.985 35.836 36.074 0 36 11 4 0 0 0 0.18636 1 19038 19038 32.786 0.74821 1 31179000 + 60095 18601 40148 41047 69988 69988 -0.028403392873769917 SPGGGRLG 8 Unmodified _SPGGGRLG_ 0 0 0 REV__nc|ENSG00000250091|P0CZ25|DNAH10OS REV__nc|ENSG00000250091|P0CZ25|DNAH10OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.690185546875 2 350.69047 699.366387 0.65065 0.00022818 -1.3335 -0.00046764 -0.68284 -0.00023947 350.690145086102 73.311 0.3469 72.835 72.695 73.042 -0.47588 23 15 2 0 0 0 0.80676 1 40138 40138 2.5775 0 1 956210 + 60096 29976 40149 41048 69989 69989 0.0046783131484744445 SPGGKTLTSFF 11 Unmodified _SPGGKTLTSFF_ 0 0 0 ENST00000359042.6_1_17:71233009-71239119:+|nuORF ENST00000359042.6_1_17:71233009-71239119:+|nuORF ENST00000359042.6_1_17:71233009-71239119:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.3021850585938 2 571.298039 1140.58152 NaN NaN NaN NaN NaN NaN NaN 59.264 1 53.19 52.69 53.69 -6.0745 0 0 0 0.77961 1 38034 38034 13.042 1.4022 1 60097 12138 40150 41049 69990 69990 0.01685708269155839 SPGHGGKH 8 Unmodified _SPGHGGKH_ 0 0 0 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 ENSG00000214819|ENST00000399044|CDRT15L2 MSMS AL20221201_MKP_PDAC_01 4 388.6952819824219 2 388.693544 775.372535 NaN NaN NaN NaN NaN NaN NaN 92.101 1 85.925 85.425 86.425 -6.1757 0 0 0 0.97348 1 60897 60897 5.7604 4.9668 1 60098 10511 40151 41050 69991 69991 -0.024136504536272696 SPGKERHLNAL 11 Unmodified _SPGKERHLNAL_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8951110839844 3 407.894799 1220.66257 0.91731 0.00037416 -0.84104 -0.00034306 0.076268 3.1109E-05 407.89472028560704 18.707 0.056396 16.086 16.069 16.126 -2.6215 8 5 2 0 0 0 0.62338 1 9876 9876 5.5233 0.80737 1 1229800 60099 5401 40152 41051 69992 69992 0.06106409031917792 SPGLAFPL 8 Unmodified _SPGLAFPL_ 0 0 0 nc|ENSG00000095981|Q96T55-4|KCNK16;chr6:39315431-39316782|112|14.71|0.04|8.69|-|ENST00000425054|KCNK16,KCNK16 nc|ENSG00000095981|Q96T55-4|KCNK16 nc|ENSG00000095981|Q96T55-4|KCNK16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.206787109375 2 401.228897 800.44324 NaN NaN NaN NaN NaN NaN NaN 20.064 1 20.072 19.572 20.572 0.0078487 0 0 0 0.97444 1 10224 10224 0.69038 0 1 60100 119 40153 41052 69993 69993 0.03503629811314113 SPGLMVFLF 9 Unmodified _SPGLMVFLF_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7723083496094 2 505.772614 1009.53067 NaN NaN NaN NaN NaN NaN NaN 19.405 1 19.405 18.905 19.905 0 0 0 0 0.57317 1 9701 9701 13.508 1.8676 1 + 60101 18942 40154 41053 69994 69994 0.026290876906045924 SPGLPGRSP 9 Unmodified _SPGLPGRSP_ 0 0 0 REV__ENST00000289013.10_2_8:144460887-144461499:+|nuORF REV__ENST00000289013.10_2_8:144460887-144461499:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.2392578125 2 434.237784 866.461016 NaN NaN NaN NaN NaN NaN NaN 27.488 1 24.451 23.951 24.951 -3.0365 0 0 0 0.098496 1 15236 15236 43.772 0 1 + 60102 25234 40155 41054 69995 69995 0.02244345066196729 SPGLRDVAL 9 Unmodified _SPGLRDVAL_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2665710449219 2 464.266542 926.51853 0.81546 0.00037859 -0.86293 -0.00040063 -0.047477 -2.2042E-05 464.2661254292681 45.83 0.29352 45.83 45.664 45.957 0 36 14 3 0 0 0 0.053952 1 25014 25014 43.982 0.20946 1 21172000 60103 1642 40156 41055 69996 69996 0.052331872717559236 SPGLRDVAL 9 Unmodified _SPGLRDVAL_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MSMS AL20221201_MKP_PDAC_01 4 464.2671813964844 2 464.266542 926.51853 NaN NaN NaN NaN NaN NaN NaN 51.473 1 45.824 45.324 46.324 -5.649 0 0 0 0.055406 1 32391 32391 55.235 3.6048 1 60104 1642 40156 41055 69997 69997 0.052331872717559236 SPGPAVWDLLA 11 Unmodified _SPGPAVWDLLA_ 0 0 0 REV__nc|ENSG00000060566|Q68CJ9-4|CREB3L3 REV__nc|ENSG00000060566|Q68CJ9-4|CREB3L3 MSMS AL20221201_MKP_PDAC_01 4 375.8700256347656 3 375.86948 1124.58661 NaN NaN NaN NaN NaN NaN NaN 14.507 1 12.004 11.504 12.504 -2.5029 0 0 0 0.93613 1 7373 7373 2.4348 0 1 + 60105 17327 40157 41056 69998 69998 0.0293001213176467 SPGPLELFVV 10 Unmodified _SPGPLELFVV_ 0 0 0 REV__ENST00000557277.5_2_14:65569249-65569390:-|nuORF REV__ENST00000557277.5_2_14:65569249-65569390:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3011474609375 2 529.30005 1056.58555 NaN NaN NaN NaN NaN NaN NaN 77.932 1 77.449 76.949 77.949 -0.4826 0 0 0 0.54588 1 42673 42673 24.021 0.87215 1 + 60106 28786 40158 41057 69999 69999 0.059517977628502194 SPGPLVNIR 9 Unmodified _SPGPLVNIR_ 0 0 0 ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7827453613281 2 476.782359 951.550165 -0.44353 -0.00021147 1.0559 0.00050342 0.61235 0.00029196 476.7827030969441 18.592 0.18936 18.615 18.512 18.701 0.023106 46 28 2 0 0 0 0.43463 1 9311 9311 10.824 1.4408 1 523740 60107 12471 40159 41058 70000 70000 0.07245180025699938 SPGPLVNIR 9 Unmodified _SPGPLVNIR_ 0 0 0 ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.7640075683594 2 476.782359 951.550165 NaN NaN NaN NaN NaN NaN NaN 18.68 1 18.686 18.186 19.186 0.0060463 0 0 0 0.6557 1 9476 9476 10.824 1.4408 1 60108 12471 40159 41058 70001 70001 0.07245180025699938 SPGPLVNIR 9 Unmodified _SPGPLVNIR_ 0 0 0 ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.786865234375 2 476.782359 951.550165 1.1689 0.0005573 3.3284 0.0015869 4.4973 0.0021442 476.784227854807 20.24 0.47042 17.547 17.35 17.82 -2.693 50 30 2 0 0 0 0.10734 2 10856 10745;10856 32.305 2.4649 1 4245500 60109 12471 40159 41058 70002;70003 70003 0.07245180025699938 SPGPLVNIR 9 Unmodified _SPGPLVNIR_ 0 0 0 ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF ENST00000375151.4_1_X:54471110-54471305:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 476.782359 951.550165 -0.32752 -0.00015616 0.88579 0.00042233 0.55826 0.00026617 476.7828325266123 18.738 0.091877 18.738 18.678 18.77 0 0.061209 -9.9117E-05 NaN 10.824 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 315120 60110 12471 40159 41058 0.07245180025699938 SPGPPAPHM 9 Oxidation (M) _SPGPPAPHM(Oxidation (M))_ SPGPPAPHM(1) SPGPPAPHM(50) 0 0 1 ENSG00000185347|ENST00000392523|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;ENST00000546536.5_1_14:105957646-105963882:+|nuORF ENSG00000185347|ENST00000392523|TEDC1;ENST00000546536.5_1_14:105957646-105963882:+|nuORF ENSG00000185347|ENST00000392523|TEDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7113037109375 2 453.710545 905.406537 1.2133 0.0005505 -0.59655 -0.00027066 0.61678 0.00027984 453.7107362890794 19.868 0.42759 17.212 17.043 17.471 -2.6564 34 25 2 0 0 0 0.040472 1 10497 10497 49.669 33.822 1 2818000 60111 9366;15108 40160 41059 70004 70004 1538 -0.04994990076875183 SPGPSRPGL 9 Unmodified _SPGPSRPGL_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600387.5_1_19:42392153-42392993:+|nuORF;ENST00000600274.5_1_19:42392153-42396275:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2380981445312 2 434.237784 866.461016 -0.25814 -0.00011209 -0.01197 -5.1979E-06 -0.27011 -0.00011729 434.23811065656696 24.397 0.26628 24.397 24.285 24.551 0 28 14 3 0 0 0 0.1685 1 12469 12469 26.268 0 1 1311600 60112 1198 40161 41060 70005 70005 0.022443450661853603 SPGQFKTY 8 Unmodified _SPGQFKTY_ 0 0 0 REV__ENST00000313478.11_1_15:50941001-50979001:-|nuORF REV__ENST00000313478.11_1_15:50941001-50979001:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.2324523925781 2 464.232168 926.449782 NaN NaN NaN NaN NaN NaN NaN 21.047 1 18.354 17.854 18.854 -2.693 0 0 0 0.96305 1 11240 11240 7.9102 0 1 + 60113 25440 40162 41061 70006 70006 -0.016384770279501026 SPGQRAVLL 9 Unmodified _SPGQRAVLL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7825012207031 2 470.782359 939.550165 -0.0033508 -1.5775E-06 0.081886 3.855E-05 0.078535 3.6973E-05 470.78234753357907 39.552 0.32191 39.255 39.07 39.392 -0.29716 32 14 3 0 0 0 0.062454 1 20867 20867 41.956 14.327 1 4334400 60114 10194 40163 41062 70007 70007 0.07797180025715988 SPGQRAVLL 9 Unmodified _SPGQRAVLL_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7813415527344 2 470.782359 939.550165 0.61646 0.00029022 -0.61033 -0.00028733 0.0061276 2.8848E-06 470.78200698219166 43.358 0.39755 38.593 38.477 38.874 -4.7648 40 26 2 0 0 0 0.069655 1 26278 26278 40.239 13.356 1 27108000 60115 10194 40163 41062 70008 70008 0.07797180025715988 SPGQRSISL 9 Unmodified _SPGQRSISL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7611694335938 2 472.761623 943.508694 NaN NaN NaN NaN NaN NaN NaN 32.38 1 32.38 31.88 32.88 0 0 0 0 0.0080339 1 16913 16913 96.936 23.968 1 60116 1679 40164 41063 70009 70009 0.03467999266388233 SPGQRSISL 9 Unmodified _SPGQRSISL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7614135742188 2 472.761623 943.508694 NaN NaN NaN NaN NaN NaN NaN 32.419 1 32.29 31.79 32.79 -0.12915 0 0 0 0.083147 1 16880 16880 47.732 11.226 1 60117 1679 40164 41063 70010 70010 0.03467999266388233 SPGRAFFR 8 Unmodified _SPGRAFFR_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.251708984375 2 469.253769 936.492984 NaN NaN NaN NaN NaN NaN NaN 19.615 1 19.615 19.115 20.115 0 0 0 0 0.97444 1 9821 9821 1.6526 0.17072 1 + 60118 22523 40165 41064 70011 70011 0.022197575399900416 SPGRLAVL 8 Unmodified _SPGRLAVL_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.7528381347656 2 406.75307 811.491587 0.77634 0.00031578 0.34133 0.00013884 1.1177 0.00045462 406.75312970599 48.162 0.43237 42.928 42.692 43.124 -5.2339 52 25 3 0 0 0 0.42686 1 29907 29907 41.84 9.5341 1 34309000 60119 5078 40166 41065 70012 70012 0.07830123451230975 SPGRYFLL 8 Unmodified _SPGRYFLL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20221201_MKP_PDAC_01 4 476.2845458984375 2 476.766178 951.517802 NaN NaN NaN NaN NaN NaN NaN 93.424 1 87.248 86.748 87.748 -6.1757 0 0 0 0.71139 1 61834 61834 27.629 3.6082 1 60120 8296;16388 40167 41066 70013 70013 0.04010392622706149 SPGTYTFSSF 10 Unmodified _SPGTYTFSSF_ 0 0 0 ENST00000446861.7_2_12:113565884-113573520:-|nuORF ENST00000446861.7_2_12:113565884-113573520:-|nuORF ENST00000446861.7_2_12:113565884-113573520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2435913085938 2 547.245472 1092.47639 0.28156 0.00015408 -2.6839 -0.0014688 -2.4024 -0.0013147 547.2441364692418 94.055 0.24997 93.635 93.479 93.729 -0.42043 19 12 2 0 0 0 0.62068 1 51400 51400 10.074 0.6908 1 585730 60121 13470 40168 41067 70014 70014 -0.06614832927266434 SPGVGKTSL 9 Unmodified _SPGVGKTSL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.2400817871094 2 423.239993 844.465432 NaN NaN NaN NaN NaN NaN NaN 24.743 1 24.743 24.243 25.243 0 0 0 0 0.39118 1 12656 12656 20.415 1.1575 1 60122 2865 40169 41068 70015 70015 0.03697809489096926 SPGVGKTSL 9 Unmodified _SPGVGKTSL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS AL20221201_MKP_PDAC_01 4 423.2392883300781 2 423.239993 844.465432 NaN NaN NaN NaN NaN NaN NaN 28.106 1 24.958 24.458 25.458 -3.1482 0 0 0 0.025508 1 15641 15641 71.708 17.875 1 60123 2865 40169 41068 70016 70016 0.03697809489096926 SPGWDWSF 8 Unmodified _SPGWDWSF_ 0 0 0 REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF REV__ENST00000514430.5_1_4:103612112-103682069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2096557617188 2 491.208692 980.402832 0.35992 0.0001768 0.76635 0.00037644 1.1263 0.00055323 491.20895361440773 66.532 0.39755 66.532 66.281 66.679 0 45 17 4 0 0 0 0.80143 1 37062 37062 5.7604 0 1 2565700 + 60124 18654 40170 41069 70017 70017 -0.08815336579095856 SPGWVRLAL 9 Unmodified _SPGWVRLAL_ 0 0 0 nc|ENSG00000167397|Q9BQB6-3|VKORC1;nc|ENSG00000167397|Q9BQB6-2|VKORC1;ENSG00000167397|ENST00000394975|VKORC1 nc|ENSG00000167397|Q9BQB6-3|VKORC1 nc|ENSG00000167397|Q9BQB6-3|VKORC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7942504882812 2 499.792727 997.5709 0.95478 0.00047719 0.8931 0.00044636 1.8479 0.00092356 499.793197686768 71.391 0.32043 71.43 71.279 71.599 0.039024 31 14 3 0 0 0 0.05447 1 39296 39296 43.858 9.7559 1 2430400 60125 7608 40171 41070 70018 70018 0.07201770405345087 SPHAVTVYM 9 Unmodified _SPHAVTVYM_ 0 0 0 nc|ENSG00000068912|Q96DZ1-2|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1 nc|ENSG00000068912|Q96DZ1-2|ERLEC1 nc|ENSG00000068912|Q96DZ1-2|ERLEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.748046875 2 502.747127 1003.4797 0.40529 0.00020376 -0.3409 -0.00017139 0.064388 3.2371E-05 502.74658164780266 45.225 0.18423 40.27 40.191 40.375 -4.9549 16 12 2 0 0 0 0.10734 1 27714 27714 32.305 14.171 1 10149000 60126 991 40172 41071 70019 70019 -0.021898613542589374 SPHCAHTV 8 Unmodified _SPHCAHTV_ 0 0 0 REV__ENST00000335725.8_1_14:90422303-90423018:+|nuORF REV__ENST00000335725.8_1_14:90422303-90423018:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7453002929688 2 426.195062 850.375571 0.31764 0.00013538 1.6572 0.00070629 1.9748 0.00084167 426.1956477429407 65.15 0.23561 64.665 64.491 64.727 -0.48428 12 10 2 0 0 0 8.7369 1 35564 35564 5.2307 0 1 596000 + 60127 25640 40173 41072 70020 70020 -0.055601433911192544 SPHDAWLASC 10 Unmodified _SPHDAWLASC_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7382202148438 2 543.737291 1085.46003 0.21591 0.0001174 -0.67706 -0.00036814 -0.46115 -0.00025075 543.7372819634838 76.986 0.84673 76.986 76.443 77.29 0 268 45 9 0 0 0 0.67046 1 42880 42880 1.4819 0 1 146680000 60128 1751 40174 41073 70021 70021 -0.07928237365035784 SPHDAWLASC 10 Unmodified _SPHDAWLASC_ 0 0 0 ENSG00000100084|ENST00000263208|HIRA;nc|ENSG00000100084|P54198-2|HIRA;ENST00000509549.5_1_22:19341546-19435194:-|nuORF ENSG00000100084|ENST00000263208|HIRA ENSG00000100084|ENST00000263208|HIRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7379150390625 2 543.737291 1085.46003 0.51332 0.00027911 0.65555 0.00035645 1.1689 0.00063556 543.7377504222444 85.728 0.73064 79.553 79.21 79.94 -6.1757 204 41 7 0 0 0 0.67046 1 56548 56548 1.4819 0 1 364970000 60129 1751 40174 41073 70022 70022 -0.07928237365035784 SPHDISNVL 9 Unmodified _SPHDISNVL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45 ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7877502441406 2 491.253631 980.49271 -0.31678 -0.00015562 -0.59107 -0.00029037 -0.90785 -0.00044599 491.25343449984604 41.565 0.26819 41.565 41.462 41.731 0 20 13 2 0 0 0 0.17718 1 22486 22486 20.454 7.9221 1 5684700 60130 8905 40175 41074 70023 70023 0.0016829302946916869 SPHDISNVL 9 Unmodified _SPHDISNVL_ 0 0 0 ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45 ENST00000587602.5_1_19:1073185-1086002:+|nuORF ENST00000587602.5_1_19:1073185-1086002:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.2515869140625 2 491.253631 980.49271 NaN NaN NaN NaN NaN NaN NaN 47.101 1 42.021 41.521 42.521 -5.0805 0 0 0 0.14 1 29199 29199 37.974 16.227 1 60131 8905 40175 41074 70024 70024 0.0016829302946916869 SPHDVSSVL 9 Unmodified _SPHDVSSVL_ 0 0 0 ENSG00000089639|ENST00000203556|GMIP;nc|ENSG00000089639|Q9P107-2|GMIP ENSG00000089639|ENST00000203556|GMIP ENSG00000089639|ENST00000203556|GMIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7721557617188 2 470.740357 939.46616 -0.26509 -0.00012479 0.98508 0.00046372 0.71999 0.00033893 470.74079234151793 33.78 0.27768 33.78 33.648 33.926 0 22 13 2 0 0 0 0.17275 1 17757 17757 21.747 0 1 1578100 60132 1532 40176 41075 70025 70025 -0.005993958618546458 SPHFRETL 8 Unmodified _SPHFRETL_ 0 0 0 nc|ENSG00000145819|Q9UNA1|ARHGAP26;ENSG00000145819|ENST00000645722|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 nc|ENSG00000145819|Q9UNA1|ARHGAP26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7576904296875 2 493.756341 985.498129 -0.6925 -0.00034193 3.0571 0.0015095 2.3646 0.0011675 493.757753640721 28.199 0.18103 28.199 28.09 28.271 0 14 8 2 0 0 0 0.72664 1 14574 14574 14.838 0 1 740960 60133 16253 40177 41076 70026 70026 0.004800166119480309 SPHGGALVM 9 Unmodified _SPHGGALVM_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7204284667969 2 434.720913 867.427273 -1.0645 -0.00046278 0.28215 0.00012265 -0.78239 -0.00034012 434.7208970459963 32.589 0.21906 32.589 32.495 32.714 0 20 11 2 0 0 0 0.038285 1 17022 17022 50.855 26.181 1 4997000 60134 7256 40178 41077 70027 70027 -0.011743996972313653 SPHGGALVM 9 Unmodified _SPHGGALVM_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7213745117188 2 434.720913 867.427273 0.66884 0.00029076 -0.44517 -0.00019353 0.22367 9.7232E-05 434.72089026615447 36.307 0.58542 32.114 31.802 32.388 -4.1928 101 35 4 0 0 0 0.038285 3 21033 21033;21153;21279 50.855 26.181 1 177110000 60135 7256 40178 41077 70028;70029;70030 70028 -0.011743996972313653 SPHGGALVM 9 Oxidation (M) _SPHGGALVM(Oxidation (M))_ SPHGGALVM(1) SPHGGALVM(78) 0 0 1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.7188415527344 2 442.71837 883.422187 1.122 0.00049671 -1.9089 -0.00084513 -0.78699 -0.00034841 442.7184224143693 21.887 1.1214 19.152 18.676 19.797 -2.7348 205 67 6 0 0 0 0.010877 3 11819 11714;11819;12052 77.984 49.497 1 81065000 60136 7256 40178 41078 70031;70032;70033 70032 1257 -0.024187035598401962 SPHGHILVL 9 Unmodified _SPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7848205566406 2 486.784902 971.55525 0.081574 3.9709E-05 -0.28677 -0.0001396 -0.2052 -9.9886E-05 486.7847108570878 41.387 0.28305 41.084 40.909 41.192 -0.30304 32 13 3 0 0 0 0.012148 1 21892 21892 74.423 32.328 1 9786200 60137 5657 40179 41079 70034 70034 0.06833483888328828 SPHGIASVL 9 Unmodified _SPHGIASVL_ 0 0 0 ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2;ENST00000489065.1_1_2:224866320-224903835:-|nuORF ENSG00000135919|ENST00000409304|SERPINE2 ENSG00000135919|ENST00000409304|SERPINE2 MSMS AL20221201_MKP_PDAC_01 4 440.7485656738281 2 440.747985 879.481417 NaN NaN NaN NaN NaN NaN NaN 51.276 1 45.627 45.127 46.127 -5.649 0 0 0 0.056448 1 32255 32255 54.774 12.679 1 60138 4758 40180 41080 70035 70035 0.03685515725987898 SPHIRLRL 8 Unmodified _SPHIRLRL_ 0 0 0 nc|ENSG00000104044|Q04671-3|OCA2;nc|ENSG00000104044|Q04671-2|OCA2;ENSG00000104044|ENST00000354638|OCA2 nc|ENSG00000104044|Q04671-3|OCA2 nc|ENSG00000104044|Q04671-3|OCA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.3120422363281 2 496.311618 990.608683 0.73838 0.00036647 -0.29582 -0.00014682 0.44257 0.00021965 496.31154454053757 42.187 0.46322 37.502 37.284 37.747 -4.6846 88 29 4 0 0 0 0.79669 1 25472 25472 8.5933 0 1 151100000 60139 2171 40181 41081 70036 70036 0.1130028139082242 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2628784179688 2 526.263999 1050.51345 0.019717 1.0376E-05 0.90919 0.00047848 0.92891 0.00048885 526.2645761395156 22.287 0.53071 22.287 22.143 22.674 0 35 14 3 0 0 0 0.05483 1 11294 11294 43.772 25.637 1 4577600 60140 2101 40182 41082 70037 70037 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.17822265625 3 351.178425 1050.51345 -0.32813 -0.00011523 0.94017 0.00033017 0.61204 0.00021494 351.17878963932236 22.28 0.30056 22.28 22.102 22.402 0 39 14 4 0 0 0 0.14 1 11298 11298 27.223 16.399 1 4019500 60141 2101 40182 41082 70038 70038 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.26513671875 2 526.263999 1050.51345 -0.24809 -0.00013056 0.57357 0.00030185 0.32547 0.00017128 526.2641267947006 22.192 0.3267 22.214 22.029 22.355 0.022896 25 14 3 0 0 0 0.23158 1 11248 11248 20.454 2.3186 1 1220000 60142 2101 40182 41082 70039 70039 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1784057617188 3 351.178425 1050.51345 -0.19103 -6.7086E-05 0.20303 7.13E-05 0.011998 4.2135E-06 351.17856276217856 22.178 0.23976 22.201 22.075 22.315 0.022894 23 10 3 0 0 0 0.41742 1 11259 11259 11.495 0.67078 1 1307800 60143 2101 40182 41082 70040 70040 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2645263671875 2 526.263999 1050.51345 0.11415 6.0073E-05 1.6131 0.00084891 1.7272 0.00090898 526.2646189073917 22.098 0.16529 22.112 22.017 22.182 0.013796 10 6 2 0 0 0 0.48152 1 11345 11345 8.5933 2.2392 1 599620 60144 2101 40182 41082 70041 70041 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1796264648438 3 351.178425 1050.51345 0.94256 0.00033101 0.74386 0.00026123 1.6864 0.00059223 351.1787009498719 24.149 0.35574 21.322 21.073 21.428 -2.8273 57 19 4 0 0 0 0.12424 2 13032 13032;13143 28.495 10.341 1 28544000 60145 2101 40182 41082 70042;70043 70042 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2645263671875 2 526.263999 1050.51345 0.27944 0.00014706 -0.26157 -0.00013766 0.017871 9.4048E-06 526.2640246245052 24.159 0.41301 21.332 21.073 21.486 -2.8273 52 22 3 0 0 0 0.023481 2 13046 13046;13165 60.074 33.19 1 18928000 60146 2101 40182 41082 70044;70045 70044 -0.009791165908382027 SPHKGSYLY 9 Unmodified _SPHKGSYLY_ 0 0 0 ENSG00000103089|ENST00000219368|FA2H;nc|ENSG00000103089|Q7L5A8-2|FA2H;ENST00000562145.1_1_16:74748090-74750623:-|nuORF ENSG00000103089|ENST00000219368|FA2H ENSG00000103089|ENST00000219368|FA2H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.263999 1050.51345 -0.24809 -0.00013056 0.57357 0.00030185 0.32547 0.00017128 526.2641267947006 22.192 0.3267 22.214 22.029 22.355 0.022896 0.0099957 -0.00037782 NaN 43.772 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1220000 60147 2101 40182 41082 -0.009791165908382027 SPHKSRTWVY 10 Unmodified _SPHKSRTWVY_ 0 0 0 REV__nc|ENSG00000139292|O75473-3|LGR5 REV__nc|ENSG00000139292|O75473-3|LGR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8882751464844 3 420.887645 1259.64111 0.7914 0.00033309 -0.065759 -2.7677E-05 0.72564 0.00030541 420.8876409105357 36.325 0.48756 32.133 31.87 32.358 -4.1928 79 29 3 0 0 0 0.63399 1 21132 21132 8.4443 0.96724 1 188980000 + 60148 20398 40183 41083 70046 70046 0.021670240031880894 SPHKTISGEE 10 Unmodified _SPHKTISGEE_ 0 0 0 REV__nc|ENSG00000047634|Q9UN30-1|SCML1 REV__nc|ENSG00000047634|Q9UN30-1|SCML1 MSMS AL20221201_MKP_PDAC_01 4 362.1827087402344 3 362.180494 1083.51965 NaN NaN NaN NaN NaN NaN NaN 21.57 1 18.835 18.335 19.335 -2.7348 0 0 0 0.57227 1 11566 11566 14.957 5.4132 1 + 60149 17232 40184 41084 70047 70047 -0.018766431499670944 SPHKYHVQF 9 Unmodified _SPHKYHVQF_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR;ENST00000517824.5_1_8:48203675-48352885:+|nuORF;ENST00000523814.5_1_8:48203675-48320543:+|nuORF;ENST00000521214.5_1_8:48191985-48612988:+|nuORF nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5740356445312 3 381.529569 1141.56688 0.45092 0.00017204 -0.09201 -3.5104E-05 0.35891 0.00013693 381.52944927666 25.167 0.24516 22.284 22.219 22.464 -2.8831 32 20 2 0 0 0 0.18882 1 13744 13744 20.415 16.225 1 10166000 60150 16347 40185 41085 70048 70048 0.0017568091163866484 SPHLLDQLK 9 Unmodified _SPHLLDQLK_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.80078125 2 525.800749 1049.58694 0.406 0.00021348 -0.54153 -0.00028474 -0.13553 -7.1259E-05 525.8001926085946 67.504 0.40957 67.022 66.822 67.232 -0.48219 47 16 4 0 0 0 0.27545 1 36844 36844 25.399 3.6527 1 4740400 60151 3335 40186 41086 70049 70049 0.06413431851615314 SPHLQQNLN 9 Unmodified _SPHLQQNLN_ 0 0 0 REV__ENST00000424518.5_1_12:54357877-54360106:-|nuORF REV__ENST00000424518.5_1_12:54357877-54360106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8495788574219 3 350.849079 1049.52541 -0.57861 -0.000203 0.54235 0.00019028 -0.036258 -1.2721E-05 350.84931175844986 16.085 0.2168 16.085 15.934 16.15 0 117 46 3 0 0 0 0.5029 1 7730 7730 4.5289 0.33936 1 3394700 + 60152 26880 40187 41087 70050 70050 0.0026250015232562873 SPHPAATAL 9 Unmodified _SPHPAATAL_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.7323608398438 2 432.732335 863.450116 -0.33017 -0.00014288 0.19785 8.5616E-05 -0.13232 -5.726E-05 432.73231386744243 25.213 0.29469 25.213 25.051 25.346 0 36 14 3 0 0 0 0.06187 1 12929 12929 42.095 6.0504 1 5829400 60153 8595 40188 41088 70051 70051 0.01292942691884491 SPHPAATAL 9 Unmodified _SPHPAATAL_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000563748.5_1_15:34651330-34651973:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7327270507812 2 432.732335 863.450116 0.66444 0.00028752 0.14143 6.1202E-05 0.80587 0.00034872 432.73223537107447 28.252 0.36606 25.104 24.896 25.262 -3.1482 36 19 3 0 0 0 0.070838 1 15710 15710 39.957 3.9131 1 19329000 60154 8595 40188 41088 70052 70052 0.01292942691884491 SPHPGGAG 8 Unmodified _SPHPGGAG_ 0 0 0 REV__ENST00000303210.8_1_7:100276544-100276721:+|nuORF REV__ENST00000303210.8_1_7:100276544-100276721:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 679.0357055664062 1 679.315814 678.308538 3.8307 0.0026023 3.2562 0.002212 7.0869 0.0048143 679.3179157256391 98.214 0.13328 98.195 98.072 98.206 -0.018188 6 4 2 0 0 0 8.7369 1 54553 54553 0.79363 0.79363 1 337740 + 60155 25349 40189 41089 70053 70053 -0.04348430610571086 SPHPLLAHPP 10 Unmodified _SPHPLLAHPP_ 0 0 0 REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.8667602539062 3 355.866181 1064.57671 0.57503 0.00020463 -0.16303 -5.8016E-05 0.412 0.00014662 355.8661289277195 28.972 0.41704 28.91 28.644 29.061 -0.062159 32 17 2 0 0 0 0.31022 1 14916 14916 17.443 5.2679 1 12966000 + 60156 29012 40190 41090 70054 70054 0.04700868917029766 SPHPLLAHPP 10 Unmodified _SPHPLLAHPP_ 0 0 0 REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF REV__ENST00000574951.5_1_17:4871732-4871942:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8662109375 3 355.866181 1064.57671 0.006279 2.2345E-06 -0.16365 -5.8239E-05 -0.15737 -5.6004E-05 355.8661001844463 28.821 0.27924 28.851 28.73 29.009 0.030104 17 11 2 0 0 0 0.42068 1 15028 15028 12.873 4.7171 1 2561900 + 60157 29012 40190 41090 70055 70055 0.04700868917029766 SPHQAFRSGGF 11 Unmodified _SPHQAFRSGGF_ 0 0 0 nc|ENSG00000137976|Q8WZ79-2|DNASE2B;ENSG00000137976|ENST00000370665|DNASE2B nc|ENSG00000137976|Q8WZ79-2|DNASE2B nc|ENSG00000137976|Q8WZ79-2|DNASE2B MSMS AL20221201_MKP_PDAC_01 4 595.7872924804688 2 595.788704 1189.56285 NaN NaN NaN NaN NaN NaN NaN 46.556 1 41.476 40.976 41.976 -5.0805 0 0 0 0.75116 1 28790 28790 14.405 1.8738 1 60158 4998 40191 41091 70056 70056 -0.02434408582053038 SPHQNLSRPLL 11 Unmodified _SPHQNLSRPLL_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF nc|ENSG00000163714|O15042-2|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2380676269531 3 421.238566 1260.69387 -0.28346 -0.0001194 0.27517 0.00011591 -0.0082856 -3.4902E-06 421.2390265634193 36.548 0.1468 36.57 36.515 36.661 0.021545 9 6 2 0 0 0 0.33405 1 19384 19384 15.538 0 1 3893000 60159 7056 40192 41092 70057 70057 0.07394982066011835 SPHQNLSRPLL 11 Unmodified _SPHQNLSRPLL_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF;ENST00000470400.5_1_3:142720470-142740424:+|nuORF nc|ENSG00000163714|O15042-2|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.7647705078125 3 421.238566 1260.69387 -0.17627 -7.4252E-05 3.1511 0.0013274 2.9749 0.0012531 421.23981296193176 30.854 0.2329 30.884 30.759 30.992 0.030106 20 9 3 0 0 0 0.30558 1 16139 16139 1.1098 0 1 1943900 60160 7056 40192 41092 70058 70058 0.07394982066011835 SPHRFCRRREF 11 Unmodified _SPHRFCRRREF_ 0 0 0 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.5899963378906 3 497.589716 1489.74732 1.2383 0.00061616 -1.6594 -0.00082568 -0.42107 -0.00020952 497.5889824205535 91.992 0.21985 85.816 85.686 85.906 -6.1757 19 12 2 0 0 0 0.69838 1 60780 60780 4.4062 0.56024 1 13285000 60161 16118 40193 41093 70059 70059 0.022034562968656246 SPHRILLGRA 10 Unmodified _SPHRILLGRA_ 0 0 0 ENST00000560415.1_2_15:40617466-40617688:+|nuORF ENST00000560415.1_2_15:40617466-40617688:+|nuORF ENST00000560415.1_2_15:40617466-40617688:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 560.3425903320312 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 107.53 1 101.36 100.86 101.86 -6.1757 0 0 0 1.0061 1 71915 71915 0 0 1 60162 15310 40194 41094 70060 70060 0.1126733796534154 SPHSAAYVL 9 Unmodified _SPHSAAYVL_ 0 0 0 MIB1|p.D198N|1|0.04|ENSG00000101752|chr18:21773684-21773684|G/A|missense_variant;ENST00000578646.5_1_18:19285077-19371317:+|nuORF;ENSG00000101752|ENST00000261537|MIB1 MIB1|p.D198N|1|0.04|ENSG00000101752|chr18:21773684-21773684|G/A|missense_variant MIB1|p.D198N|1|0.04|ENSG00000101752|chr18:21773684-21773684|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7466125488281 2 472.745442 943.476331 0.31611 0.00014944 0.18518 8.7544E-05 0.50129 0.00023698 472.74546409469406 37.249 0.2768 37.249 37.056 37.333 0 23 13 2 0 0 0 0.06187 1 19762 19762 42.095 15.211 1 2894400 60163 1989 40195 41095 70061 70061 0.002332118633717073 SPHSSPLA 8 Unmodified _SPHSSPLA_ 0 0 0 ENSG00000130701|ENST00000252998|RBBP8NL ENSG00000130701|ENST00000252998|RBBP8NL ENSG00000130701|ENST00000252998|RBBP8NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2031860351562 2 398.20341 794.392267 -0.48019 -0.00019121 -0.091743 -3.6533E-05 -0.57193 -0.00022775 398.20336110105495 20.452 0.37598 20.452 20.27 20.646 0 85 45 2 0 0 0 0.28922 1 10321 10321 56.541 0 1 3129800 60164 4238 40196 41096 70062 70062 -0.013153192335266795 SPHSVINIF 9 Unmodified _SPHSVINIF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2745361328125 2 507.274367 1012.53418 0.27874 0.0001414 -0.49411 -0.00025065 -0.21537 -0.00010925 507.274483962461 64.111 0.42868 63.626 63.458 63.887 -0.48512 60 20 5 0 0 0 0.015445 1 34946 34946 68.081 25.986 1 5335000 60165 4746 40197 41097 70063 70063 0.028414737888056152 SPHSVINIF 9 Unmodified _SPHSVINIF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2747802734375 2 507.274367 1012.53418 0.97443 0.00049431 -0.22318 -0.00011321 0.75125 0.00038109 507.2745367789001 63.678 0.37298 63.668 63.49 63.863 -0.010532 43 17 3 0 0 0 0.010818 1 34840 34840 78.149 38.192 1 7943900 60166 4746 40197 41097 70064 70064 0.028414737888056152 SPHSVINIF 9 Unmodified _SPHSVINIF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7787780761719 2 507.274367 1012.53418 0.93703 0.00047533 0.53168 0.00026971 1.4687 0.00074504 507.27464272280724 50.073 0.73953 44.533 44.218 44.957 -5.5391 161 45 5 0 0 0 0.16226 1 31591 31591 26.884 0 1 790950000 60167 4746 40197 41097 70065 70065 0.028414737888056152 SPHSVINIF 9 Unmodified _SPHSVINIF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2712707519531 2 507.274367 1012.53418 0.86336 0.00043796 0.29013 0.00014717 1.1535 0.00058514 507.2740329259691 68.737 0.43736 62.561 62.365 62.802 -6.1757 36 23 2 0 0 0 0.022193 1 44809 44809 61.357 27.255 1 31379000 60168 4746 40197 41097 70066 70066 0.028414737888056152 SPHTGIQEY 9 Unmodified _SPHTGIQEY_ 0 0 0 ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ ENSG00000104324|ENST00000220763|CPQ MSMS AL20221201_MKP_PDAC_01 4 515.7884521484375 2 516.243264 1030.47197 NaN NaN NaN NaN NaN NaN NaN 27.265 1 24.228 23.728 24.728 -3.0365 0 0 0 0.020219 1 15094 15094 78.149 42.105 1 60169 2194 40198 41098 70067 70067 -0.04204297350179331 SPHTSSPTF 9 Unmodified _SPHTSSPTF_ 0 0 0 nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3 nc|ENSG00000049246|P56645|PER3 nc|ENSG00000049246|P56645|PER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7242431640625 2 480.724707 959.43486 -0.36964 -0.00017769 0.36662 0.00017624 -0.0030179 -1.4508E-06 480.72483685147023 26.697 0.38057 26.697 26.508 26.889 0 47 17 4 0 0 0 0.016184 2 13689 13689;13789 67.344 33.241 1 12737000 60170 707 40199 41099 70068;70069 70068 -0.046479688959493615 SPHTSSPTF 9 Unmodified _SPHTSSPTF_ 0 0 0 nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3 nc|ENSG00000049246|P56645|PER3 nc|ENSG00000049246|P56645|PER3 MSMS AL20221201_MKP_PDAC_01 4 480.7251586914062 2 480.724707 959.43486 NaN NaN NaN NaN NaN NaN NaN 29.537 1 26.235 25.735 26.735 -3.3016 0 0 0 0.020354 1 16608 16608 77.984 24.409 1 60171 707 40199 41099 70070 70070 -0.046479688959493615 SPHVIQAVM 9 Oxidation (M) _SPHVIQAVM(Oxidation (M))_ SPHVIQAVM(1) SPHVIQAVM(96) 0 0 1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.26123046875 2 499.260402 996.506251 1.0417 0.00052009 -0.42124 -0.00021031 0.62049 0.00030979 499.260028270107 33.447 0.40284 29.462 29.205 29.608 -3.9853 32 22 2 0 0 0 0.0082485 2 19092 19092;19224 96.285 60.241 1 15699000 60172 3132 40200 41100 70071;70072 70071 553 0.007858275370836054 SPHVIQAVM 9 Unmodified _SPHVIQAVM_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2636108398438 2 491.262945 980.511337 0.59696 0.00029327 0.41424 0.0002035 1.0112 0.00049677 491.263118166994 48.082 0.39006 42.848 42.628 43.018 -5.2339 42 23 2 0 0 0 0.015445 2 29830 29830;29965 68.081 32.037 1 48420000 60173 3132 40200 41101 70073;70074 70073 0.020301313996924364 SPHVPHRVL 9 Unmodified _SPHVPHRVL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.3029174804688 2 521.30125 1040.58795 0.34395 0.0001793 0.54788 0.00028561 0.89183 0.00046491 521.3015507136713 24.192 0.30808 21.365 21.178 21.486 -2.8273 28 16 2 0 0 0 0.024882 2 13104 13104;13215 58.679 35.53 1 7971600 60174 4412 40201 41102 70075;70076 70075 0.06927691011196657 SPHVQPWTF 9 Unmodified _SPHVQPWTF_ 0 0 0 REV__ENST00000340573.8_1_11:57319465-57319669:-|nuORF REV__ENST00000340573.8_1_11:57319465-57319669:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7757568359375 2 549.771991 1097.52943 NaN NaN NaN NaN NaN NaN NaN 32.134 1 32.134 31.634 32.634 0 0 0 0 0.6557 1 16764 16764 10.824 5.0921 1 + 60175 25694 40202 41103 70077 70077 -0.015434103539746502 SPIAARDLL 9 Unmodified _SPIAARDLL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2821044921875 2 478.282192 954.549831 0.25093 0.00012002 2.0918 0.0010005 2.3427 0.0011205 478.2823131258676 50.369 0.28626 50.369 50.209 50.495 0 23 12 3 0 0 0 0.018061 1 27767 27767 65.474 5.6785 1 3301100 60176 9250 40203 41104 70078 70078 0.07073760305854648 SPIAARDLL 9 Unmodified _SPIAARDLL_ 0 0 0 nc|ENSG00000184363|Q9Y446-2|PKP3;ENSG00000184363|ENST00000331563|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 nc|ENSG00000184363|Q9Y446-2|PKP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2815246582031 2 478.282192 954.549831 0.80518 0.0003851 -0.21628 -0.00010345 0.5889 0.00028166 478.28260298467796 50.751 0.48679 50.338 50.051 50.538 -0.41351 40 23 3 0 0 0 0.033587 1 27324 27324 53.404 15.228 1 3882900 60177 9250 40203 41104 70079 70079 0.07073760305854648 SPIAPAPGF 9 Unmodified _SPIAPAPGF_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.7321472167969 2 428.731803 855.449054 1.6505 0.00070762 -0.50426 -0.00021619 1.1462 0.00049143 428.73150922229917 62.903 0.29379 56.728 56.563 56.857 -6.1757 20 14 2 0 0 0 0.026094 1 40644 40644 57.471 17.023 1 10424000 60178 6367 40204 41105 70080 70080 0.015547283230034736 SPIAVLLTY 9 Unmodified _SPIAVLLTY_ 0 0 0 ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;ENST00000571782.1_1_17:4647099-4647876:+|nuORF ENSG00000141497|ENST00000433935|ZMYND15 ENSG00000141497|ENST00000433935|ZMYND15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7913818359375 2 488.789318 975.564084 0.5859 0.00028638 0.57 0.00027861 1.1559 0.00056499 488.79001170616385 99.604 0.11923 93.428 93.354 93.474 -6.1757 12 7 2 0 0 0 0.042911 1 66404 66404 48.346 18.121 1 21530000 60179 5338 40205 41106 70081 70081 0.07532412734133231 SPIAVLLTY 9 Unmodified _SPIAVLLTY_ 0 0 0 ENSG00000141497|ENST00000433935|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15;ENST00000571782.1_1_17:4647099-4647876:+|nuORF ENSG00000141497|ENST00000433935|ZMYND15 ENSG00000141497|ENST00000433935|ZMYND15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 976.4988403320312 1 976.57136 975.564084 0.33465 0.00032681 -1.6288 -0.0015907 -1.2942 -0.0012639 976.5697598503357 99.611 0.12475 93.435 93.365 93.49 -6.1757 11 7 2 0 0 0 0.062767 1 66366 66366 48.346 16.04 1 16012000 60180 5338 40205 41106 70082 70082 0.07532412734133231 SPIDPKNIPKY 11 Unmodified _SPIDPKNIPKY_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.5716247558594 3 424.571322 1270.69214 0.63911 0.00027135 -0.16079 -6.8268E-05 0.47832 0.00020308 424.57128911150073 40.615 0.33141 40.312 40.108 40.439 -0.30304 38 15 3 0 0 0 0.10451 2 21423 21423;21521 33.821 30.234 1 11674000 60181 5272 40206 41107 70083;70084 70083 0.06761928257355976 SPIDPKNIPKY 11 Unmodified _SPIDPKNIPKY_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5716247558594 3 424.571322 1270.69214 0.41908 0.00017793 0.56758 0.00024098 0.98666 0.00041891 424.90583174933886 40.27 0.27511 40.275 40.149 40.424 0.0050545 18 12 2 0 0 0 0.42108 1 21471 21471 20.871 16.755 1 2006100 60182 5272 40206 41107 70085 70085 0.06761928257355976 SPIDPKNIPKY 11 Unmodified _SPIDPKNIPKY_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5713500976562 3 424.571322 1270.69214 0.87819 0.00037285 0.13567 5.7601E-05 1.0139 0.00043045 424.5713387500172 45.576 0.43801 40.621 40.41 40.848 -4.9549 53 29 2 0 0 0 0.0086238 2 28090 27939;28090 57.477 48.725 1 50890000 60183 5272 40206 41107 70086;70087 70087 0.06761928257355976 SPIDPKNIPKY 11 Unmodified _SPIDPKNIPKY_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MSMS AL20221201_MKP_PDAC_01 4 636.3538208007812 2 636.353345 1270.69214 NaN NaN NaN NaN NaN NaN NaN 45.641 1 40.686 40.186 41.186 -4.9549 0 0 0 0.029488 1 28057 28057 68.76 49.503 1 60184 5272 40206 41107 70088 70088 0.06761928257355976 SPIDPSEKY 9 Unmodified _SPIDPSEKY_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2534790039062 2 518.253297 1034.49204 -0.15489 -8.0271E-05 0.25113 0.00013015 0.096239 4.9876E-05 518.2534079444393 29.085 0.25929 29.085 28.963 29.222 0 22 12 2 0 0 0 0.011291 1 15058 15058 76.825 31.125 1 10373000 60185 1695 40207 41108 70089 70089 -0.023825464102401384 SPIDSKIFF 9 Unmodified _SPIDSKIFF_ 0 0 0 nc|ENSG00000150045|Q9NZS2-2|KLRF1;ENSG00000150045|ENST00000617889|KLRF1 nc|ENSG00000150045|Q9NZS2-2|KLRF1 nc|ENSG00000150045|Q9NZS2-2|KLRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.28173828125 2 527.2844 1052.55425 1.1271 0.00059431 -0.85376 -0.00045018 0.27334 0.00014413 527.2838846583959 86.175 1.0699 79.999 79.327 80.397 -6.1757 132 59 3 0 0 0 0.30562 1 56553 56553 16.942 1.0951 1 91291000 60186 6048 40208 41109 70090 70090 0.030072247287762366 SPIDVVEKY 9 Unmodified _SPIDVVEKY_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.279296875 2 525.279315 1048.54408 -0.20033 -0.00010523 0.6213 0.00032636 0.42097 0.00022113 525.2795973079657 48.541 0.49502 48.541 48.313 48.808 0 90 23 5 0 0 0 0.0039711 3 26657 26549;26657;26773 121.53 62.855 1 147790000 60187 3284 40209 41110 70091;70092;70093 70092 0.02174617003538515 SPIDVVEKY 9 Unmodified _SPIDVVEKY_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2794799804688 2 525.279315 1048.54408 0.21601 0.00011346 0.69756 0.00036642 0.91357 0.00047988 525.2797340272156 48.932 0.28786 48.56 48.446 48.734 -0.37172 22 14 2 0 0 0 0.026499 1 26261 26261 57.249 21.122 1 2930400 60188 3284 40209 41110 70094 70094 0.02174617003538515 SPIDVVEKY 9 Unmodified _SPIDVVEKY_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2802124023438 2 525.279315 1048.54408 0.26609 0.00013977 0.35147 0.00018462 0.61756 0.00032439 525.2795027175274 48.619 0.31283 48.576 48.341 48.654 -0.04369 31 15 3 0 0 0 0.015688 1 26212 26212 67.838 23.98 1 1766700 60189 3284 40209 41110 70095 70095 0.02174617003538515 SPIDVVEKY 9 Unmodified _SPIDVVEKY_ 0 0 0 ENSG00000117153|ENST00000367261|KLHL12;nc|ENSG00000117153|Q53G59-2|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 ENSG00000117153|ENST00000367261|KLHL12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2798461914062 2 525.279315 1048.54408 1.1974 0.00062898 0.2695 0.00014156 1.4669 0.00077055 525.2795085698897 55.382 0.89034 49.461 49.003 49.893 -5.9211 122 54 3 0 0 0 0.0087807 3 35306 35162;35306;35438 106.94 54.672 1 289300000 60190 3284 40209 41110 70096;70097;70098 70097 0.02174617003538515 SPIEEEETLF 10 Unmodified _SPIEEEETLF_ 0 0 0 REV__ENSG00000165572|ENST00000379485|KBTBD6 REV__ENSG00000165572|ENST00000379485|KBTBD6 MSMS AL20221201_MKP_PDAC_01 4 398.5285339355469 3 398.523926 1192.54995 NaN NaN NaN NaN NaN NaN NaN 23.348 1 20.57 20.07 21.07 -2.7784 0 0 0 0.94046 1 12634 12634 6.1918 0.46 1 + 60191 22023 40210 41111 70099 70099 -0.038623292754891736 SPIEFLENAY 10 Unmodified _SPIEFLENAY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.788330078125 2 591.787504 1181.56045 0.080144 4.7428E-05 1.1944 0.00070684 1.2746 0.00075427 591.7881483793675 80.851 0.52936 80.851 80.592 81.121 0 73 25 4 0 0 0 0.0093042 3 44901 44798;44901;44998 88.954 68.5 1 9652800 60192 259 40211 41112 70100;70101;70102 70101 -0.023063018303901117 SPIEFLENAY 10 Unmodified _SPIEFLENAY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7882080078125 2 591.787504 1181.56045 0.78212 0.00046285 0.56458 0.00033411 1.3467 0.00079696 591.787849493535 81.414 0.50145 80.922 80.711 81.213 -0.49247 77 21 5 0 0 0 0.0045909 3 44607 44513;44607;44713 99.799 75.778 1 19476000 60193 259 40211 41112 70103;70104;70105 70104 -0.023063018303901117 SPIEFLENAY 10 Unmodified _SPIEFLENAY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.7877197265625 2 591.787504 1181.56045 0.90667 0.00053655 0.18317 0.0001084 1.0898 0.00064495 591.7875109645921 89.876 0.8886 83.7 83.239 84.127 -6.1757 154 49 4 0 0 0 0.0045909 4 59098 59098;59217;59335;59461 99.799 75.778 1 94790000 60194 259 40211 41112 70106;70107;70108;70109 70106 -0.023063018303901117 SPIEKSGVL 9 Unmodified _SPIEKSGVL_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2683410644531 2 465.26875 928.522947 -0.012416 -5.7766E-06 -0.49564 -0.00023061 -0.50806 -0.00023638 465.26859333145075 33.627 0.13617 33.627 33.572 33.709 0 15 8 2 0 0 0 0.018061 1 17644 17644 65.474 13.205 1 7174100 60195 4971 40212 41113 70110 70110 0.05582651694669494 SPIELIFSVQY 11 Unmodified _SPIELIFSVQY_ 0 0 0 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 MSMS AL20221201_MKP_PDAC_01 4 648.34814453125 2 648.347729 1294.6809 NaN NaN NaN NaN NaN NaN NaN 61.149 1 55.001 54.501 55.501 -6.1478 0 0 0 0.73356 1 39374 39374 15.248 1.3424 1 60196 16616 40213 41114 70111 70111 0.04535106163234559 SPIEMNIYN 9 Unmodified _SPIEMNIYN_ 0 0 0 REV__ENSG00000088179|ENST00000263708|PTPN4 REV__ENSG00000088179|ENST00000263708|PTPN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7556762695312 2 540.755149 1079.49575 -0.41596 -0.00022493 1.0468 0.00056606 0.63083 0.00034113 540.7556597926683 33.129 0.28421 32.97 32.833 33.118 -0.15918 26 11 3 0 0 0 0.06294 1 17266 17266 41.84 3.6641 1 4152500 + 60197 17798 40214 41115 70112 70112 -0.04082199908043549 SPIEMNIYN 9 Unmodified _SPIEMNIYN_ 0 0 0 REV__ENSG00000088179|ENST00000263708|PTPN4 REV__ENSG00000088179|ENST00000263708|PTPN4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.755149 1079.49575 -0.5434 -0.00029385 -0.634 -0.00034284 -1.1774 -0.00063668 540.7548716318373 33.078 0.35242 33.078 32.851 33.203 0 0.053896 -0.0014517 NaN 41.84 32 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3944400 + 60198 17798 40214 41115 -0.04082199908043549 SPIEMNIYN 9 Unmodified _SPIEMNIYN_ 0 0 0 REV__ENSG00000088179|ENST00000263708|PTPN4 REV__ENSG00000088179|ENST00000263708|PTPN4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.755149 1079.49575 -0.41596 -0.00022493 1.0468 0.00056606 0.63083 0.00034113 540.7556597926683 33.129 0.28421 32.97 32.833 33.118 -0.15918 -0.053896 0.00036611 NaN 41.84 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4152500 + 60199 17798 40214 41115 -0.04082199908043549 SPIENIIAIY 10 Unmodified _SPIENIIAIY_ 0 0 0 nc|ENSG00000136108|Q8WWK9-4|CKAP2;nc|ENSG00000136108|Q8WWK9-6|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2 nc|ENSG00000136108|Q8WWK9-4|CKAP2 nc|ENSG00000136108|Q8WWK9-4|CKAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8172607421875 2 566.816064 1131.61758 NaN NaN NaN NaN NaN NaN NaN 89.021 1 88.517 88.017 89.017 -0.50423 0 0 0 0.97302 1 48678 48678 3.5965 0.70727 1 60200 4788 40215 41116 70113 70113 0.057031654459933634 SPIETPAAPG 10 Unmodified _SPIETPAAPG_ 0 0 0 ENST00000596939.1_1_19:58233432-58238846:-|nuORF ENST00000596939.1_1_19:58233432-58238846:-|nuORF ENST00000596939.1_1_19:58233432-58238846:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7269897460938 2 470.242732 938.470912 0.84315 0.00039648 0.025761 1.2114E-05 0.86891 0.0004086 470.2428887296355 36.636 0.2693 36.636 36.527 36.796 0 19 12 2 0 0 0 0.22149 1 19398 19398 10.074 0 1 906210 60201 15771 40216 41117 70114 70114 -0.0007851171909578625 SPIFIIFVH 9 Unmodified _SPIFIIFVH_ 0 0 0 ENST00000525367.1_1_11:11901789-11906208:+|nuORF ENST00000525367.1_1_11:11901789-11906208:+|nuORF ENST00000525367.1_1_11:11901789-11906208:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2107543945312 3 358.211177 1071.6117 NaN NaN NaN NaN NaN NaN NaN 39.16 1 39.172 38.672 39.672 0.011452 0 0 0 0.84021 1 20850 20850 2.7352 0 1 60202 14797 40217 41118 70115 70115 0.07876111724976909 SPIFTHVY 8 Unmodified _SPIFTHVY_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2494201660156 2 482.25036 962.486168 0.53847 0.00025968 -1.9914 -0.00096034 -1.4529 -0.00070067 482.2490534891878 49.116 0.22435 48.744 48.616 48.84 -0.37172 20 10 2 0 0 0 0.26159 1 26386 26386 60.39 26.202 1 4353000 60203 7006 40218 41119 70116 70116 0.003423998687594576 SPIFTHVY 8 Unmodified _SPIFTHVY_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2502746582031 2 482.25036 962.486168 1.2587 0.00060698 -0.088831 -4.2839E-05 1.1698 0.00056415 482.2501546648036 54.357 0.30228 48.492 48.339 48.641 -5.8653 30 18 2 0 0 0 0.094359 1 34450 34450 101.72 63.571 1 16513000 60204 7006 40218 41119 70117 70117 0.003423998687594576 SPIGRSCTL 9 Carbamidomethyl (C) _SPIGRSC(Carbamidomethyl (C))TL_ SPIGRSC(1)TL SPIGRSC(53)TL 0 1 0 ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41973324-41980100:-|nuORF ENSG00000100417|ENST00000216259|PMM1 ENSG00000100417|ENST00000216259|PMM1 MSMS AL20221201_MKP_PDAC_01 4 495.7560119628906 2 495.755484 989.496415 NaN NaN NaN NaN NaN NaN NaN 32.207 1 28.351 27.851 28.851 -3.8562 0 0 0 0.061161 1 18323 18323 53.404 13.447 1 60205 1821 40219 41120 70118 70118 175 0.0012463953170254172 SPIHTSVQF 9 Unmodified _SPIHTSVQF_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;ENST00000548431.1_1_12:54118342-54119026:-|nuORF;ENST00000547949.6_1_12:54115956-54119026:-|nuORF;ENST00000547988.5_1_12:54115751-54119026:-|nuORF;ENST00000549935.6_1_12:54107863-54119026:-|nuORF nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.293212890625 2 508.263999 1014.51345 0.78273 0.00039784 1.3568 0.00068961 2.1395 0.0010874 508.26473347134095 42.995 0.29175 42.995 42.87 43.162 0 21 14 2 0 0 0 0.15672 1 23301 23301 26.884 2.2098 1 10779000 60206 465 40220 41121 70119 70119 0.006768834091417375 SPIHTSVQF 9 Unmodified _SPIHTSVQF_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;ENST00000548431.1_1_12:54118342-54119026:-|nuORF;ENST00000547949.6_1_12:54115956-54119026:-|nuORF;ENST00000547988.5_1_12:54115751-54119026:-|nuORF;ENST00000549935.6_1_12:54107863-54119026:-|nuORF nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2639770507812 2 508.263999 1014.51345 -0.10506 -5.3399E-05 -0.39256 -0.00019952 -0.49762 -0.00025292 508.2639681373534 43.277 0.26603 42.967 42.82 43.086 -0.31039 31 12 4 0 0 0 0.0095811 1 23004 23004 81.613 33.267 1 42069000 60207 465 40220 41121 70120 70120 0.006768834091417375 SPIHTSVQF 9 Unmodified _SPIHTSVQF_ 0 0 0 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;ENST00000548431.1_1_12:54118342-54119026:-|nuORF;ENST00000547949.6_1_12:54115956-54119026:-|nuORF;ENST00000547988.5_1_12:54115751-54119026:-|nuORF;ENST00000549935.6_1_12:54107863-54119026:-|nuORF nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2647094726562 2 508.263999 1014.51345 0.90082 0.00045786 3.2331 0.0016433 4.1339 0.0021011 508.2640266541175 48.457 0.54026 43.223 42.94 43.48 -5.2346 66 32 3 0 0 0 0.0095811 3 30337 30054;30202;30337 81.613 20.256 1 156670000 60208 465 40220 41121 70121;70122;70123 70123 0.006768834091417375 SPIIGKDVL 9 Unmodified _SPIIGKDVL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2870178222656 2 471.286943 940.559333 0.53627 0.00025274 -0.52972 -0.00024965 0.0065575 3.0905E-06 471.28677248826517 50.021 0.28321 50.021 49.926 50.209 0 24 13 2 0 0 0 0.0091809 1 27598 27598 84.522 25.843 1 9338400 60209 1487 40221 41122 70124 70124 0.0866752859137705 SPIIGKDVL 9 Unmodified _SPIIGKDVL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.287109375 2 471.286943 940.559333 NaN NaN NaN NaN NaN NaN NaN 50.427 1 50.035 49.535 50.535 -0.3923 0 0 0 0.08368 1 27154 27154 47.594 14.809 1 60210 1487 40221 41122 70125 70125 0.0866752859137705 SPIIGKDVL 9 Unmodified _SPIIGKDVL_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2881774902344 2 471.286943 940.559333 0.42997 0.00020264 0.11927 5.6211E-05 0.54925 0.00025885 471.2869520006116 56.317 0.34335 50.34 50.172 50.515 -5.9769 31 19 2 0 0 0 0.0081 1 35877 35877 93.938 22.016 1 25149000 60211 1487 40221 41122 70126 70126 0.0866752859137705 SPIKDQPVM 9 Oxidation (M) _SPIKDQPVM(Oxidation (M))_ SPIKDQPVM(1) SPIKDQPVM(73) 0 0 1 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7656860351562 2 515.765517 1029.51648 -0.23147 -0.00011939 0.13055 6.7334E-05 -0.10092 -5.2052E-05 515.7657810044883 20.705 0.21058 20.705 20.589 20.799 0 31 13 3 0 0 0 0.012668 1 10434 10434 72.968 27.268 1 2471200 60212 2851 40222 41123 70127 70127 496 0.0029039047165042575 SPIKDQPVM 9 Unmodified _SPIKDQPVM_ 0 0 0 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7680969238281 2 507.76806 1013.52157 1.0225 0.00051921 -0.59139 -0.00030029 0.43113 0.00021892 507.767719835936 35.735 0.34162 31.543 31.367 31.709 -4.1928 41 21 2 0 0 0 0.024189 1 20729 20729 59.368 21.193 1 12882000 60213 2851 40222 41124 70128 70128 0.015346943342592567 SPILCKFVAV 10 Unmodified _SPILCKFVAV_ 0 0 0 REV__ENSG00000177103|ENST00000651296|DSCAML1 REV__ENSG00000177103|ENST00000651296|DSCAML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.5454711914062 3 359.543939 1075.60999 -0.15941 -5.7314E-05 3.4073 0.0012251 3.2479 0.0011678 359.5455178895549 32.764 0.16665 32.793 32.698 32.864 0.029743 11 7 2 0 0 0 0.62068 1 17220 17220 5.7834 0 1 2011200 + 60214 22964 40223 41125 70129 70129 0.0752073464473142 SPILPITEF 9 Unmodified _SPILPITEF_ 0 0 0 ENSG00000120802|ENST00000556029|TMPO ENSG00000120802|ENST00000556029|TMPO ENSG00000120802|ENST00000556029|TMPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.787109375 2 508.786776 1015.559 0.14673 7.4652E-05 -0.10594 -5.3901E-05 0.040785 2.0751E-05 508.7866613783794 92.006 0.4403 91.525 91.351 91.791 -0.48092 54 23 3 0 0 0 0.16226 1 50347 50347 26.884 9.9414 1 2670100 60215 3542 40224 41126 70130 70130 0.05184108871515036 SPILRDLVL 9 Unmodified _SPILRDLVL_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.3220825195312 2 513.321317 1024.62808 0.61216 0.00031423 0.61164 0.00031397 1.2238 0.0006282 513.3217582817874 74.173 0.26842 73.697 73.549 73.817 -0.47588 18 10 2 0 0 0 0.044042 1 40594 40594 47.732 7.4928 1 1213100 60216 3047 40225 41127 70131 70131 0.11675192891084407 SPIMEELITF 10 Unmodified _SPIMEELITF_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.3034057617188 2 590.301933 1178.58931 0.33983 0.0002006 1.5493 0.00091455 1.8891 0.0011152 590.3029983127286 99.075 0.18977 98.882 98.752 98.942 -0.19321 15 6 3 0 0 0 0.085354 1 54089 54089 49.933 34.086 1 1378000 60217 10128 40226 41128 70132 70132 0.007160994743799165 SPIMEELITF 10 Unmodified _SPIMEELITF_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 589.7816162109375 2 590.301933 1178.58931 1.2386 0.00073117 1.3194 0.00077886 2.5581 0.00151 590.3035666033508 100.77 0.1366 94.593 94.515 94.651 -6.1757 17 9 3 0 0 0 0.22489 1 67526 67526 13.042 2.2185 1 91715000 60218 10128 40226 41128 70133 70133 0.007160994743799165 SPIMQAPP 8 Unmodified _SPIMQAPP_ 0 0 0 REV__ENST00000552683.5_1_16:707859-713132:+|nuORF REV__ENST00000552683.5_1_16:707859-713132:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.4313354492188 1 840.428401 839.421125 1.3628 0.0011454 1.6404 0.0013786 3.0032 0.002524 840.4297081475087 101.02 0.10891 94.845 94.78 94.889 -6.1757 8 5 2 0 0 0 0.50673 1 67720 67720 34.102 0 1 12120000 + 60219 28660 40227 41129 70134 70134 -0.005009179287526422 SPIPESCSF 9 Carbamidomethyl (C) _SPIPESC(Carbamidomethyl (C))SF_ SPIPESC(1)SF SPIPESC(85)SF 0 1 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2265014648438 2 512.226225 1022.4379 1.0021 0.00051332 -0.25248 -0.00012933 0.74965 0.00038399 512.2260684522606 55.373 0.53073 49.451 49.157 49.688 -5.9211 59 32 2 0 0 0 0.0090948 2 35335 35115;35335 85.272 36.926 1 84564000 60220 1469 40228 41130 70135;70136 70136 138 -0.07242461833436664 SPIPESCSF 9 Carbamidomethyl (C) _SPIPESC(Carbamidomethyl (C))SF_ SPIPESC(1)SF SPIPESC(150)SF 0 1 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1023.734802246094 1 1023.44517 1022.4379 0.93883 0.00096084 0.69246 0.0007087 1.6313 0.0016695 1023.4470405116648 55.337 0.30246 49.416 49.241 49.543 -5.9211 27 18 2 0 0 0 5.2387E-18 1 35302 35302 152.41 56.301 1 23084000 60221 1469 40228 41130 70137 70137 138 -0.07242461833436664 SPIPESCSFGY 11 Carbamidomethyl (C) _SPIPESC(Carbamidomethyl (C))SFGY_ SPIPESC(1)SFGY SPIPESC(52)SFGY 0 1 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.26904296875 2 622.268621 1242.52269 0.0083917 5.2219E-06 0.21665 0.00013481 0.22504 0.00014003 622.2686580676642 55.177 0.31895 55.177 54.986 55.305 0 30 13 3 0 0 0 0.046614 1 30593 30593 51.63 42.884 1 4699400 60222 1469 40229 41131 70138 70138 138 -0.08887136087491854 SPIPESCSFGY 11 Carbamidomethyl (C) _SPIPESC(Carbamidomethyl (C))SFGY_ SPIPESC(1)SFGY SPIPESC(60)SFGY 0 1 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.2692260742188 2 622.268621 1242.52269 -0.18696 -0.00011634 -0.98272 -0.00061151 -1.1697 -0.00072785 622.2678301264104 55.876 0.28179 55.398 55.238 55.52 -0.47798 30 13 3 0 0 0 0.017265 1 30312 30312 60.074 41.928 1 5921800 60223 1469 40229 41131 70139 70139 138 -0.08887136087491854 SPIPESCSFGY 11 Carbamidomethyl (C) _SPIPESC(Carbamidomethyl (C))SFGY_ SPIPESC(1)SFGY SPIPESC(100)SFGY 0 1 0 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.26953125 2 622.268621 1242.52269 0.63526 0.0003953 0.20219 0.00012582 0.83745 0.00052112 622.2687492730955 63.387 0.40719 57.211 57.019 57.427 -6.1757 44 23 2 0 0 0 1.3587E-06 2 41034 40887;41034 103.35 75.725 1 44927000 60224 1469 40229 41131 70140;70141 70141 138 -0.08887136087491854 SPIPFPPLSY 10 Unmodified _SPIPFPPLSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3010864257812 2 559.30005 1116.58555 0.60034 0.00033577 1.4102 0.00078872 2.0105 0.0011245 559.3006864014839 93.43 0.73349 92.973 92.599 93.333 -0.4574 61 32 2 0 0 0 0.46514 1 51115 51115 18.146 7.3224 1 752690 60225 8403 40230 41132 70142 70142 0.03191797762860915 SPIPFPPLSY 10 Unmodified _SPIPFPPLSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.30126953125 2 559.30005 1116.58555 2.0757 0.0011609 0.26682 0.00014924 2.3425 0.0013102 559.3000519428061 92.897 0.9552 92.92 92.539 93.494 0.022987 111 37 4 0 0 0 5.0281E-05 4 51641 51536;51641;51740;51843 118.89 78.937 1 21418000 60226 8403 40230 41132 70143;70144;70145;70146 70144 0.03191797762860915 SPIPFPPLSY 10 Unmodified _SPIPFPPLSY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.299560546875 2 559.30005 1116.58555 0.47082 0.00026333 0.43617 0.00024395 0.90699 0.00050728 559.3001651482297 99.757 0.25018 93.581 93.49 93.74 -6.1757 49 17 4 0 0 0 0.0022539 1 66500 66500 107.19 74.882 1 304770000 60227 8403 40230 41132 70147 70147 0.03191797762860915 SPIPTEDQF 9 Unmodified _SPIPTEDQF_ 0 0 0 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 ENSG00000101577|ENST00000677752|LPIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2451171875 2 517.245472 1032.47639 0.32394 0.00016755 -0.30702 -0.00015881 0.016913 8.748E-06 517.2450937611247 50.339 0.34175 50.339 50.154 50.495 0 41 15 4 0 0 0 0.2143 1 27700 27700 21.747 0 1 3915100 60228 1979 40231 41133 70148 70148 -0.03854832927299867 SPIPTEGTSM 10 Unmodified _SPIPTEGTSM_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2404479980469 2 510.239332 1018.46411 0.44637 0.00022776 0.17147 8.7489E-05 0.61784 0.00031525 510.2393398072773 48.062 0.37724 42.828 42.641 43.018 -5.2339 38 22 2 0 0 0 0.0073675 2 29848 29848;29983 92.491 46.47 1 22258000 60229 7922 40232 41134 70149;70150 70149 -0.04438192661962148 SPIPTEGTSM 10 Unmodified _SPIPTEGTSM_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.239332 1018.46411 0.9426 0.00048095 2.7187 0.0013872 3.6613 0.0018681 510.2389552815383 42.893 0.20901 42.893 42.776 42.985 0 0.032556 0.0023333 NaN 92.491 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1581900 60230 7922 40232 41134 -0.04438192661962148 SPIQFESAW 9 Unmodified _SPIQFESAW_ 0 0 0 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 ENSG00000182481|ENST00000330459|KPNA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7561645507812 2 532.756007 1063.49746 1.1163 0.00059473 0.054115 2.883E-05 1.1704 0.00062356 532.7558369774326 79.165 0.47402 72.989 72.712 73.186 -6.1757 45 25 2 0 0 0 0.0090524 1 51837 51837 85.642 55.005 1 16559000 60231 9058 40233 41135 70151 70151 -0.03174822827782009 SPIQSDLDAF 10 Unmodified _SPIQSDLDAF_ 0 0 0 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 ENSG00000123095|ENST00000242728|BHLHE41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7652587890625 2 546.764029 1091.5135 0.24887 0.00013607 3.272 0.001789 3.5208 0.0019251 546.7647240655566 64.221 1.0371 64.221 63.52 64.557 0 121 44 4 0 0 0 0.36296 1 35841 35841 23.79 12.149 1 8275500 60232 3678 40234 41136 70152 70152 -0.02859161381525155 SPIRPPKYYTY 11 Unmodified _SPIRPPKYYTY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2474975585938 3 462.246839 1383.71869 0.10445 4.8281E-05 0.48593 0.00022462 0.59038 0.0002729 462.2470522247422 37.937 0.68672 37.954 37.552 38.239 0.01704 95 32 4 0 0 0 0.39848 3 20136 20036;20136;20243 17.572 10.535 1 13615000 60233 5013 40235 41137 70153;70154;70155 70154 0.042176171486971725 SPIRPPKYYTY 11 Unmodified _SPIRPPKYYTY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2471923828125 3 462.246839 1383.71869 1.0293 0.00047578 -0.38821 -0.00017945 0.64106 0.00029633 462.24662909843073 42.686 0.77365 38.002 37.531 38.305 -4.6846 130 50 3 0 0 0 0.11513 4 25716 25587;25716;25843;25986 44.207 37.17 1 60510000 60234 5013 40235 41137 70156;70157;70158;70159 70157 0.042176171486971725 SPIRPPKYYTY 11 Unmodified _SPIRPPKYYTY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MSMS AL20221201_MKP_PDAC_01 4 692.868408203125 2 692.86662 1383.71869 NaN NaN NaN NaN NaN NaN NaN 42.535 1 37.85 37.35 38.35 -4.6846 0 0 0 0.012427 1 25708 25708 74.772 57.659 1 60235 5013 40235 41137 70160 70160 0.042176171486971725 SPIRPPKYYTY 11 Unmodified _SPIRPPKYYTY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MSMS AL20221201_MKP_PDAC_01 4 692.866943359375 2 692.86662 1383.71869 NaN NaN NaN NaN NaN NaN NaN 42.819 1 38.135 37.635 38.635 -4.6846 0 0 0 0.012427 1 25909 25909 74.772 47.143 1 60236 5013 40235 41137 70161 70161 0.042176171486971725 SPISKYDEY 9 Unmodified _SPISKYDEY_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2578125 2 551.258579 1100.50261 -0.40082 -0.00022095 -0.96732 -0.00053325 -1.3681 -0.0007542 551.2578750708451 33.067 0.37208 33.067 32.811 33.183 0 39 18 3 0 0 0 0.013609 1 17297 17297 70.332 24.632 1 10583000 60237 1652 40236 41138 70162 70162 -0.04362563755807969 SPISKYDEY 9 Unmodified _SPISKYDEY_ 0 0 0 nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 nc|ENSG00000095383|Q9BYX2-6|TBC1D2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.26025390625 2 551.258579 1100.50261 1.1379 0.00062726 0.79641 0.00043903 1.9343 0.0010663 551.2590222339363 37.752 0.39668 33.383 33.201 33.597 -4.3689 50 23 3 0 0 0 0.0099157 2 22160 22160;22299 80.676 29.046 1 19157000 60238 1652 40236 41138 70163;70164 70163 -0.04362563755807969 SPISQKIIY 9 Unmodified _SPISQKIIY_ 0 0 0 nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.T826Hfs*2|1|0.1|ENSG00000000971|chr1:196736886-196736886|A/-|frameshift_variant;CFH|p.N828Sfs*37|1|0.09|ENSG00000000971|chr1:196736888-196736892|ACTGA/-|frameshift_variant nc|ENSG00000000971|P08603|CFH nc|ENSG00000000971|P08603|CFH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.3076171875 2 524.8055 1047.59645 -0.13406 -7.0356E-05 0.17064 8.9552E-05 0.036578 1.9196E-05 524.8055474760364 45.303 0.21564 44.979 44.871 45.086 -0.32425 29 17 2 0 0 0 0.00085914 1 24161 24161 140.63 80.559 1 53667000 60239 252 40237 41139 70165 70165 0.07455200137133033 SPISQKIIY 9 Unmodified _SPISQKIIY_ 0 0 0 nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.T826Hfs*2|1|0.1|ENSG00000000971|chr1:196736886-196736886|A/-|frameshift_variant;CFH|p.N828Sfs*37|1|0.09|ENSG00000000971|chr1:196736888-196736892|ACTGA/-|frameshift_variant nc|ENSG00000000971|P08603|CFH nc|ENSG00000000971|P08603|CFH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.305419921875 2 524.8055 1047.59645 -0.10653 -5.5905E-05 -0.77289 -0.00040562 -0.87942 -0.00046152 524.805244241657 44.998 0.18058 44.976 44.875 45.055 -0.022064 10 8 2 0 0 0 0.016404 1 24159 24159 107.1 70.593 1 19670000 60240 252 40237 41139 70166 70166 0.07455200137133033 SPISQKIIY 9 Unmodified _SPISQKIIY_ 0 0 0 nc|ENSG00000000971|P08603|CFH;ENSG00000000971|ENST00000367429|CFH;nc|ENSG00000000971|P08603-2|CFH;ENST00000466229.5_1_1:196648727-196709933:+|nuORF;CFH|p.T826Hfs*2|1|0.1|ENSG00000000971|chr1:196736886-196736886|A/-|frameshift_variant;CFH|p.N828Sfs*37|1|0.09|ENSG00000000971|chr1:196736888-196736892|ACTGA/-|frameshift_variant nc|ENSG00000000971|P08603|CFH nc|ENSG00000000971|P08603|CFH MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8058471679688 2 524.8055 1047.59645 1.1274 0.00059169 -0.11841 -6.2143E-05 1.009 0.00052955 524.8052418743532 50.556 0.52225 45.017 44.741 45.264 -5.5391 83 32 3 0 0 0 0.0085366 2 31778 31642;31778 90.135 34.25 1 233200000 60241 252 40237 41139 70167;70168 70168 0.07455200137133033 SPITARDAL 9 Unmodified _SPITARDAL_ 0 0 0 nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L;nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2633361816406 2 472.263999 942.513445 -0.38103 -0.00017995 0.44901 0.00021205 0.067982 3.2105E-05 472.2640046348615 34.47 0.23415 34.47 34.345 34.579 0 26 11 3 0 0 0 0.029718 1 18144 18144 55.503 3.8729 1 7171000 60242 7424 40238 41140 70169 70169 0.03988883409135724 SPITARDAL 9 Unmodified _SPITARDAL_ 0 0 0 nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L;ENSG00000166024|ENST00000298999|R3HCC1L;nc|ENSG00000166024|Q7Z5L2|R3HCC1L;nc|ENSG00000166024|Q7Z5L2-3|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L nc|ENSG00000166024|Q7Z5L2-2|R3HCC1L MSMS AL20221201_MKP_PDAC_01 4 472.2648620605469 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 39.158 1 34.707 34.207 35.207 -4.4509 0 0 0 0.12101 1 23206 23206 40.239 2.088 1 60243 7424 40238 41140 70170 70170 0.03988883409135724 SPITEAIYI 9 Unmodified _SPITEAIYI_ 0 0 0 ENSG00000188771|ENST00000338832|PLET1 ENSG00000188771|ENST00000338832|PLET1 ENSG00000188771|ENST00000338832|PLET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7779846191406 2 503.776408 1005.53826 -0.15185 -7.6496E-05 0.48642 0.00024505 0.33458 0.00016855 503.7767223391244 65.137 0.29869 64.653 64.555 64.854 -0.48428 21 13 2 0 0 0 0.14602 1 35551 35551 28.487 12.64 1 3175300 60244 9694 40239 41141 70171 70171 0.03571518491833103 SPIVARTDL 9 Unmodified _SPIVARTDL_ 0 0 0 nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44;nc|ENSG00000131725|Q5JSH3-4|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 nc|ENSG00000131725|Q5JSH3-2|WDR44 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.16162109375 2 486.279649 970.544745 0.31254 0.00015198 0.34617 0.00016834 0.65871 0.00032032 486.2796637958578 38.104 0.1405 38.104 38.007 38.148 0 11 6 2 0 0 0 0.19758 1 20284 20284 5.2969 0 1 1316600 60245 4345 40240 41142 70172 70172 0.05829456443234449 SPIYWDTIPP 10 Unmodified _SPIYWDTIPP_ 0 0 0 ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;nc|ENSG00000144045|Q8TE96-2|DQX1;ENST00000495597.1_1_2:74751010-74751370:-|nuORF ENSG00000144045|ENST00000404568|DQX1 ENSG00000144045|ENST00000404568|DQX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.79931640625 2 594.800414 1187.58628 0.94065 0.0005595 -2.4602 -0.0014633 -1.5195 -0.0009038 594.7994207699091 40.894 0.25439 36.286 36.116 36.371 -4.6079 31 15 3 0 0 0 0.54684 1 24464 24464 13.906 5.7505 1 12490000 60246 5581 40241 41143 70173 70173 -1.4075880926611717E-05 SPKAATPSL 9 Unmodified _SPKAATPSL_ 0 0 0 REV__ENSG00000204569|ENST00000376511|PPP1R10 REV__ENSG00000204569|ENST00000376511|PPP1R10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2485961914062 2 436.247818 870.481082 0.97964 0.00042737 0.068545 2.9903E-05 1.0482 0.00045727 436.2478329711918 30.3 0.43896 26.804 26.553 26.992 -3.497 41 21 3 0 0 0 0.021948 1 17125 17125 61.602 3.8799 1 36433000 + 60247 24183 40242 41144 70174 70174 0.04066096006135922 SPKGTHSGLE 10 Unmodified _SPKGTHSGLE_ 0 0 0 ENST00000519651.5_2_8:143352450-143353011:-|nuORF ENST00000519651.5_2_8:143352450-143353011:-|nuORF ENST00000519651.5_2_8:143352450-143353011:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7569580078125 2 506.756538 1011.49852 1.0549 0.00053459 -0.25076 -0.00012707 0.80416 0.00040752 506.7563540539956 20.118 0.35043 17.462 17.257 17.607 -2.6564 50 23 3 0 0 0 0.022967 1 10732 10732 72.968 9.0074 1 7486700 60248 14711 40243 41145 70175 70175 -0.006766084588434751 SPKGVDIVM 9 Oxidation (M) _SPKGVDIVM(Oxidation (M))_ SPKGVDIVM(1) SPKGVDIVM(50) 0 0 1 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2538146972656 2 481.254785 960.495018 -0.56819 -0.00027344 0.02654 1.2773E-05 -0.54164 -0.00026067 481.25490202681664 30.228 0.26265 30.228 30.1 30.363 0 26 12 3 0 0 0 0.040683 1 15674 15674 49.554 15.452 1 3851300 60249 2610 40244 41146 70176 70176 450 0.013190054429287557 SPKGVDIVM 9 Oxidation (M) _SPKGVDIVM(Oxidation (M))_ SPKGVDIVM(1) SPKGVDIVM(42) 0 0 1 nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 nc|ENSG00000108828|Q99536-2|VAT1 MSMS AL20221201_MKP_PDAC_01 4 481.2550964355469 2 481.254785 960.495018 NaN NaN NaN NaN NaN NaN NaN 34.447 1 30.352 29.852 30.852 -4.0951 0 0 0 0.10661 1 19864 19864 41.956 11.319 1 60250 2610 40244 41146 70177 70177 450 0.013190054429287557 SPKGVNKVNL 10 Unmodified _SPKGVNKVNL_ 0 0 0 REV__nc|ENSG00000196263|Q9BX82-2|ZNF471 REV__nc|ENSG00000196263|Q9BX82-2|ZNF471 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5451354980469 3 352.545108 1054.61349 1.1128 0.0003923 -0.41421 -0.00014603 0.69854 0.00024627 352.5450637757904 27.795 0.36054 24.758 24.594 24.955 -3.0365 25 18 2 0 0 0 0.65023 1 15457 15457 8.4443 1.3426 1 10683000 + 60251 29878 40245 41147 70178 70178 0.08837120742941806 SPKKPGREIEL 11 Unmodified _SPKKPGREIEL_ 0 0 0 ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE ENST00000472011.5_1_1:235582749-235612074:+|nuORF ENST00000472011.5_1_1:235582749-235612074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.5789184570312 3 418.578588 1252.71394 -0.40883 -0.00017113 1.0079 0.00042188 0.59905 0.00025075 418.5788100284288 22.56 0.1873 22.56 22.486 22.674 0 21 8 3 0 0 0 0.33469 1 11479 11479 24.957 15.713 1 2942700 60252 13892 40246 41148 70179 70179 0.09768733005967078 SPKLPVSSL 9 Unmodified _SPKLPVSSL_ 0 0 0 ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A ENSG00000116017|ENST00000263620|ARID3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2789001464844 2 464.279118 926.543683 0.54778 0.00025432 -0.27218 -0.00012637 0.2756 0.00012795 464.27889504285633 49.461 0.21479 49.069 48.964 49.178 -0.3923 15 10 2 0 0 0 0.029718 1 26624 26624 55.503 7.7541 1 2351100 60253 3187 40247 41149 70180 70180 0.07747242074333371 SPKQGVSL 8 Unmodified _SPKQGVSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2347106933594 2 408.23471 814.454868 -0.44213 -0.00018049 0.4448 0.00018158 0.0026701 1.09E-06 408.2349003186588 24.381 0.30414 24.381 24.227 24.531 0 42 18 3 0 0 0 0.22971 2 12504 12397;12504 65.235 3.8904 1 4548000 60254 8367 40248 41150 70181;70182 70182 0.04021826834684816 SPKQGVSL 8 Unmodified _SPKQGVSL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2346801757812 2 408.23471 814.454868 0.63327 0.00025852 -0.043614 -1.7805E-05 0.58965 0.00024072 408.2346120126196 27.096 0.38542 24.06 23.854 24.239 -3.0365 41 19 3 0 0 0 0.063507 2 15049 14928;15049 126.57 26.767 1 33780000 60255 8367 40248 41150 70183;70184 70184 0.04021826834684816 SPKRDLIAL 9 Unmodified _SPKRDLIAL_ 0 0 0 nc|ENSG00000053900|Q9UJX5-2|ANAPC4;ENSG00000053900|ENST00000315368|ANAPC4;nc|ENSG00000053900|Q9UJX5-3|ANAPC4 nc|ENSG00000053900|Q9UJX5-2|ANAPC4 nc|ENSG00000053900|Q9UJX5-2|ANAPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.8111572265625 2 506.811116 1011.60768 0.13594 6.8896E-05 -0.0076584 -3.8813E-06 0.12828 6.5015E-05 506.8110273359257 40.804 0.2257 40.5 40.376 40.601 -0.30304 17 10 2 0 0 0 0.14594 1 21581 21581 28.495 5.3461 1 3007400 60256 750 40249 41151 70185 70185 0.10234022231270501 SPKRPPSPIKF 11 Unmodified _SPKRPPSPIKF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5830078125 3 418.583674 1252.72919 -0.17421 -7.2922E-05 -0.11057 -4.6282E-05 -0.28478 -0.0001192 418.91813656695905 30.487 0.2541 30.517 30.371 30.625 0.030106 20 11 2 0 0 0 0.37147 1 15932 15932 23.016 17.232 1 1528400 60257 601 40250 41152 70186 70186 0.11293644593774843 SPKRPPSPIKF 11 Unmodified _SPKRPPSPIKF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 418.8861083984375 3 418.583674 1252.72919 1.7047 0.00071356 -0.16764 -7.0173E-05 1.5371 0.00064339 418.5836432613437 33.804 0.37617 29.819 29.608 29.984 -3.9853 45 20 3 0 0 0 0.28844 1 19447 19447 12.228 7.8214 1 11745000 60258 601 40250 41152 70187 70187 0.11293644593774843 SPKRPRLQL 9 Unmodified _SPKRPRLQL_ 0 0 0 ENSG00000156858|ENST00000300835|PRR14;ENST00000563211.5_1_16:30662924-30663662:+|nuORF;ENST00000565410.5_1_16:30662432-30664164:+|nuORF ENSG00000156858|ENST00000300835|PRR14 ENSG00000156858|ENST00000300835|PRR14 MSMS AL20221201_MKP_PDAC_01 4 365.8666076660156 3 365.564614 1093.67201 NaN NaN NaN NaN NaN NaN NaN 27.42 1 24.384 23.884 24.884 -3.0365 0 0 0 0.27852 1 15194 15194 26.268 14.027 1 60259 6484 40251 41153 70188 70188 0.12892222108098395 SPKRRRCA 8 Unmodified _SPKRRRCA_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2;nc|ENSG00000174574|Q9H9L7-2|AKIRIN1;ENSG00000174574|ENST00000432648|AKIRIN1 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.7181396484375 1 973.547228 972.539951 -0.066112 -6.4364E-05 1.1065 0.0010772 1.0404 0.0010129 973.5496264192166 23.792 0.5876 23.805 23.312 23.9 0.012396 31 28 2 0 0 0 0.80143 1 11932 11932 5.7604 0 1 14782000 60260 4691 40252 41154 70189 70189 0.05258293819485971 SPKSDPTL 8 Unmodified _SPKSDPTL_ 0 0 0 ENST00000479285.5_1_1:114438325-114438811:-|nuORF;ENST00000462591.1_1_1:114438325-114438970:-|nuORF;ENSG00000134262|ENST00000369569|AP4B1 ENST00000479285.5_1_1:114438325-114438811:-|nuORF;ENSG00000134262|ENST00000369569|AP4B1 ENSG00000134262|ENST00000369569|AP4B1 MSMS AL20221201_MKP_PDAC_01 4 422.7250366210938 2 422.724175 843.433798 NaN NaN NaN NaN NaN NaN NaN 41.026 1 36.418 35.918 36.918 -4.6079 0 0 0 0.9559 1 24580 24580 9.3831 0.035688 1 60261 14035;4580 40253 41155 70190 70190 0.005818167351435477 SPLAARLLY 9 Unmodified _SPLAARLLY_ 0 0 0 ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.3001403808594 2 502.300384 1002.58622 NaN NaN NaN NaN NaN NaN NaN 59.241 1 58.75 58.25 59.25 -0.49079 0 0 0 0.091025 1 32227 32227 45.7 17.213 1 60262 1789 40254 41156 70191 70191 0.08502637202570895 SPLAARLLY 9 Unmodified _SPLAARLLY_ 0 0 0 ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.3006286621094 2 502.300384 1002.58622 0.48742 0.00024483 0.36787 0.00018478 0.8553 0.00042962 502.30051527892476 58.891 0.45784 58.831 58.607 59.065 -0.060722 60 22 4 0 0 0 0.040683 2 32123 32024;32123 49.554 22.671 1 42939000 60263 1789 40254 41156 70192;70193 70193 0.08502637202570895 SPLAARLLY 9 Unmodified _SPLAARLLY_ 0 0 0 ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO ENSG00000100300|ENST00000337554|TSPO MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3004455566406 2 502.300384 1002.58622 1.4073 0.00070687 -0.48534 -0.00024379 0.92192 0.00046308 502.29989788702073 64.532 0.73342 58.356 58.09 58.823 -6.1757 88 40 3 0 0 0 0.040683 3 41717 41717;41854;42003 49.554 22.671 1 103200000 60264 1789 40254 41156 70194;70195;70196 70194 0.08502637202570895 SPLAEAISY 9 Unmodified _SPLAEAISY_ 0 0 0 ENST00000498735.1_1_1:70771620-70790623:-|nuORF;ENSG00000118454|ENST00000370944|ANKRD13C ENST00000498735.1_1_1:70771620-70790623:-|nuORF ENST00000498735.1_1_1:70771620-70790623:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.745361328125 2 475.745108 949.475663 0.079206 3.7682E-05 1.8511 0.00088065 1.9303 0.00091833 475.7458091642047 56.552 0.2483 56.552 56.361 56.609 0 22 10 3 0 0 0 0.10734 1 31415 31415 32.305 16.458 1 1795900 60265 3372 40255 41157 70197 70197 -0.0010962757633024012 SPLAEAISY 9 Unmodified _SPLAEAISY_ 0 0 0 ENST00000498735.1_1_1:70771620-70790623:-|nuORF;ENSG00000118454|ENST00000370944|ANKRD13C ENST00000498735.1_1_1:70771620-70790623:-|nuORF ENST00000498735.1_1_1:70771620-70790623:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4840087890625 1 950.482939 949.475663 -0.49358 -0.00046914 1.819 0.0017289 1.3254 0.0012598 950.4849612662111 56.484 0.23149 56.484 56.403 56.635 0 15 9 2 0 0 0 0.019303 1 31431 31431 64.236 15.89 1 1411900 60266 3372 40255 41157 70198 70198 -0.0010962757633024012 SPLATVIGH 9 Unmodified _SPLATVIGH_ 0 0 0 nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-4|OGG1;ENST00000449570.6_1_3:9798246-9807816:+|nuORF nc|ENSG00000114026|O15527-5|OGG1 nc|ENSG00000114026|O15527-5|OGG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 447.7559204101562 2 447.75581 893.497067 0.062736 2.8091E-05 -0.5818 -0.00026051 -0.51907 -0.00023241 447.7554684085858 60.127 0.35645 59.636 59.45 59.806 -0.49079 25 17 2 0 0 0 0.095405 1 32684 32684 34.102 7.2188 1 2305100 60267 16130 40256 41158 70199 70199 0.046058022430429446 SPLDLPCLHA 10 Unmodified _SPLDLPCLHA_ 0 0 0 REV__ENST00000593901.5_1_19:51140923-51142361:-|nuORF REV__ENST00000593901.5_1_19:51140923-51142361:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2985229492188 2 533.273509 1064.53247 0.64306 0.00034293 2.6051 0.0013892 3.2481 0.0017321 533.2736563460597 73.107 0.36845 73.107 72.966 73.335 0 29 16 3 0 0 0 0.22327 1 40744 40744 19.257 0 1 1405000 + 60268 29197 40257 41159 70200 70200 0.00278096708530029 SPLDLRASF 9 Unmodified _SPLDLRASF_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38;ZBTB38|p.T551Nfs*9|1|0.14|ENSG00000177311|chr3:141444032-141444033|-/A|frameshift_variant ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2716369628906 2 503.271824 1004.5291 0.59983 0.00030188 0.018044 9.0812E-06 0.61787 0.00031096 503.2711562170553 65.804 0.37257 59.629 59.51 59.883 -6.1757 30 21 2 0 0 0 0.040733 1 42723 42723 49.527 5.669 1 14877000 60269 8675 40258 41160 70201 70201 0.02701169926183411 SPLDPDNHNAW 11 Unmodified _SPLDPDNHNAW_ 0 0 0 ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF ENST00000301454.8_1_19:6441086-6441584:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5229797363281 3 422.523031 1264.54726 NaN NaN NaN NaN NaN NaN NaN 18.932 1 18.938 18.438 19.438 0.0060463 0 0 0 0.94287 1 9613 9613 0.45452 0 1 60270 11570 40259 41161 70202 70202 -0.07442739889779659 SPLDSSPKY 9 Unmodified _SPLDSSPKY_ 0 0 0 nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB;ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2485656738281 2 497.248015 992.481476 -0.17372 -8.6383E-05 -0.18562 -9.2297E-05 -0.35934 -0.00017868 497.24858247611235 29.467 0.1818 29.467 29.308 29.489 0 18 8 3 0 0 0 0.044296 1 15248 15248 47.594 17.754 1 2419700 60271 7204 40260 41162 70203 70203 -0.015065290646589347 SPLEIRWKE 9 Unmodified _SPLEIRWKE_ 0 0 0 ENST00000389048.7_2_2:30143287-30143704:-|nuORF ENST00000389048.7_2_2:30143287-30143704:-|nuORF ENST00000389048.7_2_2:30143287-30143704:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.78564453125 2 579.319306 1156.62406 -0.46952 -0.000272 1.1453 0.0006635 0.6758 0.0003915 579.3198514581363 36.242 0.13883 35.993 35.927 36.066 -0.2497 8 5 2 0 0 0 0.20727 1 19051 19051 7.9102 1.187 1 855250 60272 12641 40261 41163 70204 70204 0.05201103397371298 SPLERTQI 8 Unmodified _SPLERTQI_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.2599792480469 2 472.263999 942.513445 NaN NaN NaN NaN NaN NaN NaN 39.14 1 34.69 34.19 35.19 -4.4509 0 0 0 0.41481 1 23192 23192 52.268 0 1 + 60273 17447 40262 41164 70205 70205 0.03988883409135724 SPLERYYDY 9 Unmodified _SPLERYYDY_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;nc|ENSG00000163975|P08582-2|MELTF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2767333984375 2 603.277303 1204.54005 -0.34601 -0.00020874 0.13672 8.2481E-05 -0.20929 -0.00012626 603.2770612987481 44.29 0.3211 44.29 44.151 44.472 0 42 16 4 0 0 0 0.0074582 2 24164 24052;24164 110.55 71.938 1 67352000 60274 7110 40263 41165 70206;70207 70207 -0.05403472490183958 SPLERYYDY 9 Unmodified _SPLERYYDY_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;nc|ENSG00000163975|P08582-2|MELTF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.77880859375 2 603.277303 1204.54005 -0.21787 -0.00013144 0.12789 7.7153E-05 -0.08998 -5.4283E-05 603.2771640558628 44.617 0.17672 44.302 44.189 44.366 -0.31585 20 8 3 0 0 0 0.0087224 1 23783 23783 107.1 68.485 1 26541000 60275 7110 40263 41165 70208 70208 -0.05403472490183958 SPLERYYDY 9 Unmodified _SPLERYYDY_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;nc|ENSG00000163975|P08582-2|MELTF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.27783203125 2 603.277303 1204.54005 0.60026 0.00036212 -0.74769 -0.00045106 -0.14743 -8.8939E-05 603.2770288608255 50.166 0.49269 44.627 44.408 44.9 -5.5391 103 31 4 0 0 0 0.0039711 3 31328 31328;31470;31606 121.53 82.919 1 220410000 60276 7110 40263 41165 70209;70210;70211 70209 -0.05403472490183958 SPLESDVSL 9 Unmodified _SPLESDVSL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;ENST00000565378.1_1_16:56545067-56553907:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4713745117188 1 946.472768 945.465492 -0.054068 -5.1174E-05 1.5168 0.0014356 1.4627 0.0013844 946.4735078578315 53.43 0.28452 53.43 53.281 53.566 0 15 12 2 0 0 0 0.0095811 1 29603 29603 81.613 17.377 1 2383400 60277 3830 40264 41166 70212 70212 -0.009422353015565932 SPLESDVSL 9 Unmodified _SPLESDVSL_ 0 0 0 ENSG00000125124|ENST00000245157|BBS2;ENST00000565378.1_1_16:56545067-56553907:-|nuORF;ENST00000565781.5_1_16:56536573-56553907:-|nuORF;ENST00000569342.5_1_16:56536573-56553774:-|nuORF ENSG00000125124|ENST00000245157|BBS2 ENSG00000125124|ENST00000245157|BBS2 MSMS AL20221201_MKP_PDAC_01 4 473.7400817871094 2 473.740022 945.465492 NaN NaN NaN NaN NaN NaN NaN 61.857 1 55.681 55.181 56.181 -6.1757 0 0 0 0.023279 1 39866 39866 74.423 10.186 1 60278 3830 40264 41166 70213 70213 -0.009422353015565932 SPLFNGVTY 9 Unmodified _SPLFNGVTY_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2540283203125 2 499.2531 996.491647 0.26938 0.00013449 0.74757 0.00037323 1.0169 0.00050771 499.25354720009926 64.891 0.40829 64.406 64.231 64.639 -0.48457 43 18 3 0 0 0 0.03568 2 35367 35367;35473 52.268 22.044 1 5143800 60279 10689 40265 41167 70214;70215 70214 -0.006739213394325816 SPLFNGVTY 9 Unmodified _SPLFNGVTY_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS AL20221201_MKP_PDAC_01 4 499.2538452148438 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 71.31 1 65.134 64.634 65.634 -6.1757 0 0 0 0.032808 1 46602 46602 65.235 20.828 1 60280 10689 40265 41167 70216 70216 -0.006739213394325816 SPLGSHWLL 9 Unmodified _SPLGSHWLL_ 0 0 0 ENST00000288235.8_1_15:59664829-59664865:-|nuORF ENST00000288235.8_1_15:59664829-59664865:-|nuORF ENST00000288235.8_1_15:59664829-59664865:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2769470214844 2 505.276909 1008.53927 1.0022 0.00050637 0.05999 3.0312E-05 1.0622 0.00053668 505.276888984523 71.412 0.29816 71.451 71.301 71.599 0.039024 20 13 2 0 0 0 0.070838 1 39301 39301 39.957 13.074 1 1480600 60281 11452 40266 41168 70217 70217 0.03533777651421133 SPLGVSLVY 9 Unmodified _SPLGVSLVY_ 0 0 0 nc|ENSG00000079432|Q96RK0-2|CIC;ENSG00000079432|ENST00000681038|CIC nc|ENSG00000079432|Q96RK0-2|CIC nc|ENSG00000079432|Q96RK0-2|CIC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.5204467773438 1 934.52441 933.517133 0.66225 0.00061889 0.5005 0.00046773 1.1628 0.0010866 934.5242181893703 74.704 0.28425 74.228 74.065 74.349 -0.47588 19 11 2 0 0 0 0.095405 1 40842 40842 34.102 17.16 1 908990 60282 1277 40267 41169 70218 70218 0.04771553183002197 SPLHLAAQY 9 Unmodified _SPLHLAAQY_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2667846679688 2 500.266542 998.51853 0.29559 0.00014787 0.37618 0.00018819 0.67177 0.00033606 500.26669063905354 43.338 0.23361 43.338 43.204 43.438 0 28 11 3 0 0 0 0.047196 1 23497 23497 46.021 19.68 1 11741000 60283 2174;5515 40268 41170 70219 70219 0.019211872717505685 SPLHLAAQY 9 Unmodified _SPLHLAAQY_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.265869140625 2 500.266542 998.51853 -0.074911 -3.7476E-05 -0.26432 -0.00013223 -0.33923 -0.00016971 500.26630477799847 43.566 0.23352 43.256 43.105 43.338 -0.31039 25 10 3 0 0 0 0.031062 1 23141 23141 54.774 28.432 1 35523000 60284 2174;5515 40268 41170 70220 70220 0.019211872717505685 SPLHLAAQY 9 Unmodified _SPLHLAAQY_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1;ENSG00000143458|ENST00000368918|GABPB2 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2662353515625 2 500.266542 998.51853 0.87144 0.00043595 -0.81372 -0.00040708 0.057721 2.8876E-05 500.26612234552437 48.816 0.46266 43.42 43.156 43.619 -5.3961 65 27 3 0 0 0 0.031062 2 30447 30328;30447 54.774 28.432 1 165860000 60285 2174;5515 40268 41170 70221;70222 70222 0.019211872717505685 SPLHLCLCY 9 Unmodified _SPLHLCLCY_ 0 0 0 ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.751220703125 2 524.751356 1047.48816 0.47275 0.00024808 -0.27626 -0.00014497 0.19649 0.00010311 524.7511252113763 77.407 0.43414 77.407 77.186 77.62 0 79 31 4 0 0 0 0.28047 1 43060 43060 18.135 1.0484 1 19134000 60286 11889 40269 41171 70223 70223 -0.03368630709314857 SPLHLCLCY 9 Unmodified _SPLHLCLCY_ 0 0 0 ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7511596679688 2 524.751356 1047.48816 -0.95619 -0.00050176 1.0277 0.00053929 0.071512 3.7526E-05 524.7517262861492 77.87 0.65282 77.387 77.082 77.735 -0.4826 109 41 4 0 0 0 0.28047 1 42622 42622 18.135 1.0484 1 33377000 60287 11889 40269 41171 70224 70224 -0.03368630709314857 SPLHLCLCY 9 Unmodified _SPLHLCLCY_ 0 0 0 ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7518310546875 2 524.751356 1047.48816 0.25043 0.00013141 0.90385 0.00047429 1.1543 0.00060571 524.7517455827523 85.468 0.49659 79.292 79.05 79.547 -6.1757 65 30 3 0 0 0 0.28047 1 56290 56290 18.135 1.0484 1 46189000 60288 11889 40269 41171 70225 70225 -0.03368630709314857 SPLHLCLCY 9 Unmodified _SPLHLCLCY_ 0 0 0 ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF ENST00000334983.9_1_3:32496117-32496450:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 524.751356 1047.48816 -0.95619 -0.00050176 1.0277 0.00053929 0.071512 3.7526E-05 524.7517262861492 77.87 0.65282 77.387 77.082 77.735 -0.4826 0 0 NaN 18.135 109 41 4 NaN NaN NaN NaN 0 NaN NaN 0 33377000 60289 11889 40269 41171 -0.03368630709314857 SPLHLFSTL 9 Unmodified _SPLHLFSTL_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7853393554688 2 507.784567 1013.55458 0.23543 0.00011955 0.81151 0.00041207 1.0469 0.00053162 507.7849096888513 72.517 0.34131 72.558 72.399 72.74 0.041725 25 15 2 0 0 0 0.095405 1 39955 39955 34.102 5.6156 1 2938800 60290 6153 40270 41172 70226 70226 0.048346444486242035 SPLHLFSTL 9 Unmodified _SPLHLFSTL_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:50057675-50130728:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7850952148438 2 507.784567 1013.55458 1.2972 0.0006587 0.36903 0.00018739 1.6662 0.00084608 507.7842482214354 95.781 0.15212 89.606 89.508 89.66 -6.1757 14 9 2 0 0 0 0.0090851 1 63435 63435 85.357 14.641 1 8838700 60291 6153 40270 41172 70227 70227 0.048346444486242035 SPLHRVLHY 9 Unmodified _SPLHRVLHY_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5454406738281 3 374.545331 1120.61416 0.20244 7.5823E-05 0.67649 0.00025338 0.87893 0.0003292 374.5454606683659 26.416 0.22399 26.443 26.319 26.543 0.026951 14 9 2 0 0 0 0.2143 1 13705 13705 26.268 9.7023 1 3382700 60292 2059 40271 41173 70228 70228 0.05867960182672505 SPLHYLLL 8 Unmodified _SPLHYLLL_ 0 0 0 REV__nc|ENSG00000166889|Q86TB9-2|PATL1 REV__nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.2409362792969 2 478.284203 954.553853 0.54995 0.00026303 -2.6489 -0.0012669 -2.099 -0.0010039 478.28248843175436 56.279 0.43274 50.302 50.067 50.5 -5.9769 44 24 3 0 0 0 8.7369 1 35972 35972 49.669 9.2203 1 23073000 + 60293 22163 40272 41174 70229 70229 0.07475849799584466 SPLIQRRQI 9 Unmodified _SPLIQRRQI_ 0 0 0 ENST00000554558.5_1_14:55966046-56046785:-|nuORF ENST00000554558.5_1_14:55966046-56046785:-|nuORF ENST00000554558.5_1_14:55966046-56046785:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.8969116210938 3 370.896252 1109.66693 NaN NaN NaN NaN NaN NaN NaN 37.04 1 37.062 36.562 37.562 0.021545 0 0 0 0.36957 1 19648 19648 21.537 4.0943 1 60294 15212 40273 41175 70230 70230 0.11647918245466826 SPLKALSEF 9 Unmodified _SPLKALSEF_ 0 0 0 FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2770385742188 2 496.276575 990.538597 0.33098 0.00016426 1.2153 0.00060312 1.5463 0.00076737 496.27701875516317 58.956 0.39243 58.465 58.252 58.644 -0.49079 52 18 4 0 0 0 0.0099157 2 32114 32015;32114 80.676 36.904 1 9054000 60295 16209;15895 40274 41176 70231;70232 70232 0.04294938211717181 SPLKALSEF 9 Unmodified _SPLKALSEF_ 0 0 0 FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2767639160156 2 496.276575 990.538597 1.3777 0.00068371 -1.3137 -0.00065194 0.064033 3.1778E-05 496.2759339280553 64.579 0.47221 58.403 58.15 58.622 -6.1757 39 26 2 0 0 0 0.013118 2 41779 41779;41930 71.708 27.936 1 33721000 60296 16209;15895 40274 41176 70233;70234 70233 0.04294938211717181 SPLKGLSL 8 Unmodified _SPLKGLSL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.7554931640625 2 407.755278 813.496004 0.46393 0.00018917 -0.66863 -0.00027264 -0.2047 -8.3468E-05 407.7549211567968 52.661 0.31384 52.227 52.064 52.378 -0.43367 25 15 2 0 0 0 0.10059 1 28421 28421 99.755 14.483 1 6694700 60297 8150 40275 41177 70235 70235 0.08179587874133176 SPLKGLSL 8 Unmodified _SPLKGLSL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.7552490234375 2 407.755278 813.496004 0.4023 0.00016404 -0.10301 -4.2004E-05 0.29929 0.00012204 407.75520164045815 52.318 0.30123 52.259 52.087 52.388 -0.058918 28 14 3 0 0 0 0.15437 1 28311 28311 85.642 13.719 1 5553200 60298 8150 40275 41177 70236 70236 0.08179587874133176 SPLKGLSL 8 Unmodified _SPLKGLSL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.75537109375 2 407.755278 813.496004 0.3521 0.00014357 0.54981 0.00022419 0.90191 0.00036776 407.7554502516073 57.972 0.34457 51.944 51.753 52.098 -6.0275 32 19 2 0 0 0 0.078938 2 37040 37040;37178 110.67 18.183 1 37375000 60299 8150 40275 41177 70237;70238 70237 0.08179587874133176 SPLKKEQPL 9 Unmodified _SPLKKEQPL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3101196289062 2 520.310949 1038.60735 0.22026 0.0001146 0.36071 0.00018768 0.58097 0.00030229 520.3107200348638 23.1 0.1925 20.321 20.166 20.359 -2.7784 16 11 2 0 0 0 0.0074582 1 12477 12477 110.55 41.448 1 2957700 60300 4691 40276 41178 70239 70239 0.08958602511415847 SPLKKEQPL 9 Unmodified _SPLKKEQPL_ 0 0 0 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 ENSG00000135334|ENST00000257787|AKIRIN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.310949 1038.60735 -0.13087 -6.8095E-05 0.4589 0.00023877 0.32803 0.00017068 520.3111331552775 20.463 0.11487 20.463 20.435 20.55 0 0.070991 4.6191E-05 NaN 110.55 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 716070 60301 4691 40276 41178 0.08958602511415847 SPLKTTSSY 9 Unmodified _SPLKTTSSY_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.25634765625 2 492.25584 982.497126 -0.23849 -0.0001174 0.6615 0.00032563 0.42301 0.00020823 492.25619739014013 22.69 0.20457 22.69 22.55 22.754 0 14 9 2 0 0 0 0.10247 1 11535 11535 32.786 14.651 1 1117600 60302 3785 40277 41179 70240 70240 0.0051775745238273885 SPLLAKQLPD 10 Unmodified _SPLLAKQLPD_ 0 0 0 REV__ENST00000409988.7_1_2:201170916-201171069:+|nuORF REV__ENST00000409988.7_1_2:201170916-201171069:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.2137451171875 3 361.213246 1080.61791 NaN NaN NaN NaN NaN NaN NaN 80.699 1 74.523 74.023 75.023 -6.1757 0 0 0 0.45933 1 52948 52948 28.234 9.5124 1 + 60303 26704 40278 41180 70241 70241 0.08082585165857381 SPLLDPLPSL 10 Unmodified _SPLLDPLPSL_ 0 0 0 nc|ENSG00000107731|Q8IZJ1-2|UNC5B;ENSG00000107731|ENST00000335350|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2055053710938 3 351.20598 1050.59611 -0.47002 -0.00016507 -1.707 -0.0005995 -2.177 -0.00076457 351.2054264153795 19.889 0.16758 19.917 19.856 20.024 0.028357 17 9 2 0 0 0 0.63089 1 10057 10057 9.544 3.3521 1 663000 60304 2511 40279 41181 70242 70242 0.07283780417287744 SPLLDYTLQ 9 Unmodified _SPLLDYTLQ_ 0 0 0 REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2792358398438 2 525.279315 1048.54408 0.035094 1.8434E-05 0.42714 0.00022437 0.46224 0.0002428 525.2794065213734 70.265 0.35555 69.786 69.627 69.983 -0.47903 55 17 4 0 0 0 0.2143 1 38397 38397 21.747 5.8995 1 15071000 + 60305 29849 40280 41182 70243 70243 0.02174617003538515 SPLLERASL 9 Unmodified _SPLLERASL_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;ENST00000535116.1_1_11:63670194-63670631:+|nuORF ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2866516113281 2 493.287474 984.560395 0.092761 4.5758E-05 -1.0963 -0.00054078 -1.0035 -0.00049502 493.2870386833612 47.037 0.18476 47.037 46.941 47.125 0 11 8 2 0 0 0 0.069655 1 25770 25770 40.239 3.733 1 1859100 60306 1086 40281 41183 70244 70244 0.06749742960278127 SPLLERASL 9 Unmodified _SPLLERASL_ 0 0 0 ENSG00000072518|ENST00000402010|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;ENST00000535116.1_1_11:63670194-63670631:+|nuORF ENSG00000072518|ENST00000402010|MARK2 ENSG00000072518|ENST00000402010|MARK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2877502441406 2 493.287474 984.560395 0.8707 0.0004295 0.93726 0.00046234 1.808 0.00089184 493.28699621404917 47.242 0.20207 46.889 46.798 47 -0.3526 23 9 3 0 0 0 0.033587 1 25322 25322 53.404 13.454 1 3793200 60307 1086 40281 41183 70245 70245 0.06749742960278127 SPLLHLSPF 9 Unmodified _SPLLHLSPF_ 0 0 0 ENST00000598494.5_2_19:6466686-6467070:+|nuORF ENST00000598494.5_2_19:6466686-6467070:+|nuORF ENST00000598494.5_2_19:6466686-6467070:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.3092956542969 2 505.78711 1009.55967 1.24 0.00062715 2.0754 0.0010497 3.3153 0.0016768 505.78793524692344 71.172 0.38257 71.211 70.982 71.365 0.039024 28 16 2 0 0 0 0.094631 1 39190 39190 39.957 18.211 1 1511200 60308 15785 40282 41184 70246 70246 0.05526948311239721 SPLLKVTMLKL 11 Unmodified _SPLLKVTMLKL_ 0 0 0 REV__HEATR4|p.A728V|1|0.19|ENSG00000187105|chr14:73500653-73500653|G/A|missense_variant REV__HEATR4|p.A728V|1|0.19|ENSG00000187105|chr14:73500653-73500653|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 414.9338073730469 3 414.933315 1241.77812 NaN NaN NaN NaN NaN NaN NaN 17.287 1 14.701 14.201 15.201 -2.5866 0 0 0 0.94165 1 9026 9026 1.3296 0 1 + 60309 29361 40283 41185 70247 70247 0.16689796838522852 SPLLSSISVC 10 Unmodified _SPLLSSISVC_ 0 0 0 REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF REV__ENST00000261254.7_1_12:4412550-4412766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2725524902344 2 503.267893 1004.52123 -0.10453 -5.2605E-05 3.1617 0.0015912 3.0572 0.0015386 503.27001858328856 59.57 0.60818 59.079 58.685 59.293 -0.49079 57 28 3 0 0 0 0.38092 1 32473 32473 22.736 1.1993 1 4445600 + 60310 24978 40284 41186 70248 70248 0.019152746144072808 SPLMDPPSL 9 Unmodified _SPLMDPPSL_ 0 0 0 REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF REV__ENST00000572275.1_1_17:7826969-7827125:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.7433166503906 2 478.741511 955.468469 NaN NaN NaN NaN NaN NaN NaN 22.944 1 20.165 19.665 20.665 -2.7784 0 0 0 0.12337 1 12382 12382 39.957 0.0076237 1 + 60311 28986 40285 41187 70249 70249 -0.011046834484204737 SPLNLDIGQVY 11 Unmodified _SPLNLDIGQVY_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8223876953125 2 609.821878 1217.6292 0.20542 0.00012527 -0.99974 -0.00060966 -0.79432 -0.00048439 609.8218727606119 78.836 0.36647 78.35 78.139 78.506 -0.48596 40 14 4 0 0 0 0.018218 1 43173 43173 59.052 20.438 1 2814600 60312 6003 40286 41188 70250 70250 0.029093624693359743 SPLNLEQAAY 10 Unmodified _SPLNLEQAAY_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.279541015625 2 553.279846 1104.54514 -0.1445 -7.9949E-05 -0.46319 -0.00025627 -0.60769 -0.00033622 553.2798393246828 55.327 0.43233 55.327 55.029 55.461 0 48 18 4 0 0 0 0.033218 1 30754 30754 66.457 33.671 1 13389000 60313 10015 40287 41189 70251 70251 -0.0029516862757645868 SPLNPLVQIT 10 Unmodified _SPLNPLVQIT_ 0 0 0 nc|ENSG00000134909|A7KAX9-3|ARHGAP32 nc|ENSG00000134909|A7KAX9-3|ARHGAP32 nc|ENSG00000134909|A7KAX9-3|ARHGAP32 MSMS AL20221201_MKP_PDAC_01 4 361.2147521972656 3 361.213246 1080.61791 NaN NaN NaN NaN NaN NaN NaN 80.893 1 74.718 74.218 75.218 -6.1757 0 0 0 0.69089 1 53078 53078 17.049 0.4827 1 60314 16204 40288 41190 70252 70252 0.08082585165857381 SPLNRAGL 8 Unmodified _SPLNRAGL_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2401123046875 2 414.240327 826.466101 1.3441 0.0005568 -0.2697 -0.00011172 1.0744 0.00044508 414.2402256623724 35.742 0.28475 31.549 31.394 31.678 -4.1928 26 17 2 0 0 0 0.29252 1 20778 20778 56.177 14.082 1 5770700 60315 3963 40289 41191 70253 70253 0.045926489288035555 SPLNRAGLL 9 Unmodified _SPLNRAGLL_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7831420898438 2 470.782359 939.550165 NaN NaN NaN NaN NaN NaN NaN 46.919 1 46.582 46.082 47.082 -0.33664 0 0 0 0.14 1 25134 25134 37.974 1.9298 1 60316 3963 40290 41192 70254 70254 0.07797180025715988 SPLNRAGLL 9 Unmodified _SPLNRAGLL_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7834167480469 2 470.782359 939.550165 1.0693 0.00050343 2.1074 0.00099215 3.1768 0.0014956 470.7824881351666 46.566 0.28532 46.533 46.39 46.675 -0.033421 20 13 2 0 0 0 0.012668 1 25043 25043 72.968 4.8872 1 4552900 60317 3963 40290 41192 70255 70255 0.07797180025715988 SPLNRAGLL 9 Unmodified _SPLNRAGLL_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MSMS AL20221201_MKP_PDAC_01 4 470.7826843261719 2 470.782359 939.550165 NaN NaN NaN NaN NaN NaN NaN 52.238 1 46.503 46.003 47.003 -5.7345 0 0 0 0.0052483 1 32968 32968 103.35 2.982 1 60318 3963 40290 41192 70256 70256 0.07797180025715988 SPLNSSSAL 9 Unmodified _SPLNSSSAL_ 0 0 0 nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.4466552734375 1 875.446888 874.439611 0.52215 0.00045712 0.092749 8.1197E-05 0.6149 0.00053831 875.4467295785508 45.033 0.33609 40.181 40.036 40.372 -4.852 30 21 2 0 0 0 0.0032147 1 27515 27515 125.53 10.88 1 10026000 60319 7100 40291 41193 70257 70257 -0.0026308475319183344 SPLNSSSAL 9 Unmodified _SPLNSSSAL_ 0 0 0 nc|ENSG00000163938|Q9BVP2-2|GNL3;ENSG00000163938|ENST00000418458|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2270202636719 2 438.227082 874.439611 0.60998 0.00026731 0.51487 0.00022563 1.1248 0.00049294 438.2273605410229 45.025 0.31924 40.173 40.053 40.372 -4.852 36 20 2 0 0 0 0.0086722 2 27536 27536;27691 88.954 17.032 1 17156000 60320 7100 40291 41193 70258;70259 70258 -0.0026308475319183344 SPLPAHLQQAF 11 Unmodified _SPLPAHLQQAF_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;ENST00000609762.1_1_7:138978594-138982579:+|nuORF ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.82666015625 2 604.824755 1207.63496 NaN NaN NaN NaN NaN NaN NaN 55.211 1 54.733 54.233 55.233 -0.47798 0 0 0 0.77961 1 29943 29943 13.042 0 1 60321 6536 40292 41194 70260 70260 0.03944505771664808 SPLPATPLSAK 11 Unmodified _SPLPATPLSAK_ 0 0 0 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2138366699219 3 361.213246 1080.61791 0.88047 0.00031804 0.99749 0.00036031 1.878 0.00067834 361.21320953751774 49.704 0.75637 49.655 49.25 50.006 -0.048824 80 37 3 0 0 0 0.42951 1 26905 26905 19.987 1.2657 1 7250900 60322 2247 40293 41195 70261 70261 0.08082585165857381 SPLPELPA 8 Unmodified _SPLPELPA_ 0 0 0 nc|ENSG00000160219|Q8WWW8-3|GAB3;nc|ENSG00000160219|Q8WWW8|GAB3;ENSG00000160219|ENST00000424127|GAB3 nc|ENSG00000160219|Q8WWW8-3|GAB3 nc|ENSG00000160219|Q8WWW8-3|GAB3 MSMS AL20221201_MKP_PDAC_01 4 412.2312927246094 2 412.231636 822.448719 NaN NaN NaN NaN NaN NaN NaN 25.958 1 23.007 22.507 23.507 -2.9511 0 0 0 0.95973 1 14250 14250 8.5933 0 1 60323 6705 40294 41196 70262 70262 0.03039308603149493 SPLPGDGITF 10 Unmodified _SPLPGDGITF_ 0 0 0 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2587280273438 2 502.258382 1002.50221 0.27654 0.00013889 -1.3852 -0.00069571 -1.1086 -0.00055681 502.25810522694024 70.231 0.53582 70.231 70.053 70.589 0 80 31 4 0 0 0 0.043729 2 39170 39072;39170 61.357 21.4 1 5267000 60324 8396 40295 41197 70263;70264 70264 0.0010606131500026095 SPLPGDGITF 10 Unmodified _SPLPGDGITF_ 0 0 0 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 ENSG00000174165|ENST00000310442|ZDHHC24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.259033203125 2 502.258382 1002.50221 0.89185 0.00044794 1.6049 0.00080609 2.4968 0.001254 502.25928234671545 77.881 0.68115 71.705 71.392 72.073 -6.1757 72 38 2 0 0 0 0.11755 1 51078 51078 43.858 11.741 1 50215000 60325 8396 40295 41197 70265 70265 0.0010606131500026095 SPLPQEVVM 9 Oxidation (M) _SPLPQEVVM(Oxidation (M))_ SPLPQEVVM(1) SPLPQEVVM(80) 0 0 1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MSMS AL20221201_MKP_PDAC_01 4 508.2623901367188 2 508.260068 1014.50558 NaN NaN NaN NaN NaN NaN NaN 52.506 1 46.772 46.272 47.272 -5.7345 0 0 0 0.019104 1 33144 33144 79.596 35.738 1 60326 5409 40296 41198 70266 70266 995 -0.0010901190263439275 SPLPRFLEI 9 Unmodified _SPLPRFLEI_ 0 0 0 nc|ENSG00000102796|A0PJE2-3|DHRS12 nc|ENSG00000102796|A0PJE2-3|DHRS12 nc|ENSG00000102796|A0PJE2-3|DHRS12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.5307922363281 3 357.878087 1070.61243 -0.27715 -9.9187E-05 1.0145 0.00036306 0.73732 0.00026387 357.87837573560694 33.398 0.35738 33.238 33.078 33.436 -0.15918 39 14 4 0 0 0 0.21144 1 17341 17341 7.1017 3.1573 1 17345000 60327 16094 40297 41199 70267 70267 0.07994906374028687 SPLPRSTPVL 10 Unmodified _SPLPRSTPVL_ 0 0 0 REV__ENST00000370566.7_1_1:86861873-86861948:-|nuORF REV__ENST00000370566.7_1_1:86861873-86861948:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.7635498046875 2 533.816399 1065.61824 0.81202 0.00043347 -0.40672 -0.00021711 0.4053 0.00021635 533.8161584886099 55.661 0.34967 49.739 49.603 49.953 -5.9211 33 20 2 0 0 0 0.19064 1 35441 35441 20.415 0 1 10846000 + 60328 26059 40298 41200 70268 70268 0.08806004885695984 SPLPSGPQHTI 11 Unmodified _SPLPSGPQHTI_ 0 0 0 ENST00000531958.5_1_11:67183879-67184254:+|nuORF ENST00000531958.5_1_11:67183879-67184254:+|nuORF ENST00000531958.5_1_11:67183879-67184254:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.8218383789062 2 567.301113 1132.58767 0.2378 0.0001349 1.1818 0.00067042 1.4196 0.00080532 567.3007730771749 85.181 0.37111 79.005 78.749 79.121 -6.1757 32 22 2 0 0 0 0.28167 1 56154 56154 18.373 2.5259 1 18278000 60329 14917 40299 41201 70269 70269 0.026682265006684247 SPLPSGPQHTI 11 Unmodified _SPLPSGPQHTI_ 0 0 0 ENST00000531958.5_1_11:67183879-67184254:+|nuORF ENST00000531958.5_1_11:67183879-67184254:+|nuORF ENST00000531958.5_1_11:67183879-67184254:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.301113 1132.58767 0.57881 0.00032836 -0.33807 -0.00019179 0.24075 0.00013658 567.3000868423744 78.56 0.17197 78.612 78.532 78.704 0.052452 -0.19656 -0.0012684 NaN 13.615 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 986730 60330 14917 40299 41201 0.026682265006684247 SPLPSPSAM 9 Oxidation (M) _SPLPSPSAM(Oxidation (M))_ SPLPSPSAM(1) SPLPSPSAM(42) 0 0 1 ENSG00000143614|ENST00000368655|GATAD2B ENSG00000143614|ENST00000368655|GATAD2B ENSG00000143614|ENST00000368655|GATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7179870605469 2 451.718036 901.421518 -0.47689 -0.00021542 -0.048503 -2.191E-05 -0.52539 -0.00023733 451.71799242773767 32.964 0.29754 32.964 32.79 33.088 0 21 14 2 0 0 0 0.06187 1 17257 17257 42.095 11.87 1 1924200 60331 5534 40300 41202 70270 70270 1015 -0.03313542999546826 SPLPVWTSK 9 Unmodified _SPLPVWTSK_ 0 0 0 ENST00000393674.6_1_4:175204677-175204749:-|nuORF ENST00000393674.6_1_4:175204677-175204749:-|nuORF ENST00000393674.6_1_4:175204677-175204749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.783935546875 2 507.784567 1013.55458 -0.57642 -0.0002927 -1.7961 -0.00091201 -2.3725 -0.0012047 507.783925434265 33.476 0.23944 33.317 33.196 33.436 -0.15918 14 9 2 0 0 0 0.30202 1 17482 17482 17.113 0 1 840110 60332 12712 40301 41203 70271 70271 0.04834644448612835 SPLQAASIY 9 Unmodified _SPLQAASIY_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2524719238281 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 53.283 1 52.831 52.331 53.331 -0.45173 0 0 0 0.39118 1 28823 28823 20.415 10.341 1 60333 3499 40302 41204 70272 70272 0.015340786605634094 SPLQAASIY 9 Unmodified _SPLQAASIY_ 0 0 0 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 ENSG00000120149|ENST00000239243|MSX2 MSMS AL20221201_MKP_PDAC_01 4 475.2535705566406 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 60.732 1 54.584 54.084 55.084 -6.1478 0 0 0 0.18351 1 39085 39085 32.786 11.039 1 60334 3499 40302 41204 70273 70273 0.015340786605634094 SPLQEEHNF 9 Unmodified _SPLQEEHNF_ 0 0 0 nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7540283203125 2 550.753995 1099.49344 -0.60738 -0.00033452 -0.1984 -0.00010927 -0.80578 -0.00044379 550.7530900252247 32.854 0.31519 32.854 32.714 33.029 0 20 15 2 0 0 0 0.0082475 1 17199 17199 92.653 50.559 1 4004800 60335 16599 40303 41205 70274 70274 -0.052329123214803985 SPLQEEHNF 9 Unmodified _SPLQEEHNF_ 0 0 0 nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.3187866210938 2 550.753995 1099.49344 1.1836 0.0006519 -1.082 -0.00059591 0.10166 5.5991E-05 550.7538166164213 37.299 0.16409 33.016 32.923 33.087 -4.2835 13 9 2 0 0 0 0.087822 1 21896 21896 36.506 20.659 1 8103700 60336 16599 40303 41205 70275 70275 -0.052329123214803985 SPLQELTLY 9 Unmodified _SPLQELTLY_ 0 0 0 chr7:23343853-23345940|146|19.54|0.99|4.31|-|1|IGF2BP3,IGF2BP3|1;ENSG00000136231|ENST00000258729|IGF2BP3 chr7:23343853-23345940|146|19.54|0.99|4.31|-|1|IGF2BP3,IGF2BP3|1 chr7:23343853-23345940|146|19.54|0.99|4.31|-|1|IGF2BP3,IGF2BP3|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2882080078125 2 532.28714 1062.55973 1.165 0.00062012 1.3265 0.00070608 2.4915 0.0013262 532.2866775016457 86.311 0.66078 80.135 79.907 80.567 -6.1757 79 35 3 0 0 0 0.018301 1 56875 56875 65.235 23.14 1 24164000 60337 120 40304 41206 70276 70276 0.030949035205594555 SPLQFYVDY 9 Unmodified _SPLQFYVDY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2705688476562 2 566.27149 1130.52843 -0.54093 -0.00030631 1.5688 0.00088838 1.0279 0.00058207 566.2709926103194 78.089 0.31503 77.606 77.488 77.803 -0.4826 42 19 3 0 0 0 0.024882 1 42726 42726 58.679 46.438 1 4898400 60338 9884 40305 41207 70277 70277 -0.0316166951354262 SPLQFYVDY 9 Unmodified _SPLQFYVDY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2713012695312 2 566.27149 1130.52843 0.26621 0.00015075 2.7639 0.0015651 3.0301 0.0017159 566.2718955957567 85.28 0.69016 79.104 78.857 79.547 -6.1757 75 42 3 0 0 0 0.032796 1 56122 56122 53.833 36.89 1 43067000 60339 9884 40305 41207 70278 70278 -0.0316166951354262 SPLQFYVDY 9 Unmodified _SPLQFYVDY_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 566.27149 1130.52843 0.3961 0.0002243 -0.93522 -0.00052959 -0.53913 -0.00030529 566.7726547587542 77.535 0.23496 77.585 77.463 77.698 0.050102 0.0050713 -0.00067376 NaN 58.679 15 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1359600 60340 9884 40305 41207 -0.0316166951354262 SPLQFYVNY 9 Unmodified _SPLQFYVNY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7782592773438 2 565.779482 1129.54441 NaN NaN NaN NaN NaN NaN NaN 75.618 1 75.141 74.641 75.641 -0.47714 0 0 0 0.074615 1 41395 41395 49.933 35.095 1 60341 16209 40306 41208 70279 70279 -0.015179632766148643 SPLQFYVNY 9 Unmodified _SPLQFYVNY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7799682617188 2 565.779482 1129.54441 0.50477 0.00028559 0.56381 0.00031899 1.0686 0.00060458 565.780334038395 75.164 0.76622 75.21 75.004 75.771 0.045967 64 36 3 0 0 0 0.0090948 3 41498 41374;41397;41498 85.272 66.015 1 19973000 60342 16209 40306 41208 70280;70281;70282 70282 -0.015179632766148643 SPLQFYVNY 9 Unmodified _SPLQFYVNY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7804565429688 2 565.779482 1129.54441 0.88943 0.00050322 0.21977 0.00012434 1.1092 0.00062757 565.7796012217525 82.841 0.63237 76.665 76.372 77.005 -6.1757 114 35 4 0 0 0 0.0088174 3 54304 54304;54435;54569 103.75 76.865 1 147610000 60343 16209 40306 41208 70283;70284;70285 70283 -0.015179632766148643 SPLQNGYF 8 Unmodified _SPLQNGYF_ 0 0 0 ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2 ENSG00000172468|ENST00000307393|HSFY1 ENSG00000172468|ENST00000307393|HSFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.466796875 1 925.441409 924.434132 0.61723 0.00057121 -0.015006 -1.3887E-05 0.60223 0.00055733 925.4411372430391 49.396 0.4112 49.396 49.194 49.606 0 66 18 5 0 0 0 0.76266 1 27123 27123 11.64 1.5664 1 84604000 60344 7931 40307 41209 70286 70286 -0.031107635449984627 SPLRGKSG 8 Unmodified _SPLRGKSG_ 0 0 0 REV__nc|ENSG00000124233|P04279-2|SEMG1 REV__nc|ENSG00000124233|P04279-2|SEMG1 MSMS AL20221201_MKP_PDAC_01 4 401.560791015625 2 401.232502 800.450451 NaN NaN NaN NaN NaN NaN NaN 83.553 1 77.377 76.877 77.877 -6.1757 0 0 0 0.90769 1 54944 54944 18.135 5.6034 1 + 60345 19433 40308 41210 70287 70287 0.042243624117645595 SPLRHPVIY 9 Unmodified _SPLRHPVIY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.2099304199219 3 361.209948 1080.60801 -0.23977 -8.6609E-05 0.25205 9.1042E-05 0.012273 4.433E-06 361.21004227399203 32.587 0.18312 32.458 32.392 32.576 -0.12915 11 7 2 0 0 0 0.54213 1 17020 17020 4.897 1.9018 1 1343400 60346 1780 40309 41211 70288 70288 0.07093441951133173 SPLRHPVIY 9 Unmodified _SPLRHPVIY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2099914550781 3 361.209948 1080.60801 -0.2134 -7.7082E-05 0.69377 0.0002506 0.48037 0.00017351 361.54448216934514 32.373 0.21964 32.403 32.319 32.539 0.029743 19 8 3 0 0 0 0.40615 1 17001 17001 12.175 4.0192 1 2720800 60347 1780 40309 41211 70289 70289 0.07093441951133173 SPLRHPVIY 9 Unmodified _SPLRHPVIY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3121337890625 2 541.311284 1080.60801 -0.13473 -7.2929E-05 0.18493 0.00010011 0.050206 2.7177E-05 541.3116632327765 32.397 0.19746 32.427 32.341 32.539 0.029743 11 7 2 0 0 0 0.37578 1 17033 17033 9.3831 0 1 1440600 60348 1780 40309 41211 70290 70290 0.07093441951133173 SPLRHPVIY 9 Unmodified _SPLRHPVIY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.2106323242188 3 361.209948 1080.60801 1.0807 0.00039037 0.091146 3.2923E-05 1.1719 0.00042329 361.54412892615613 36.44 0.19248 32.247 32.118 32.311 -4.1928 14 11 2 0 0 0 0.36306 1 21250 21250 14.218 4.1442 1 14012000 60349 1780 40309 41211 70291 70291 0.07093441951133173 SPLRPAAM 8 Unmodified _SPLRPAAM_ 0 0 0 REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7297668457031 2 421.73128 841.448008 NaN NaN NaN NaN NaN NaN NaN 22.331 1 22.331 21.831 22.831 0 0 0 0 0.95973 1 11353 11353 8.5933 0 1 + 60350 30041 40310 41212 70292 70292 0.02094190682430508 SPLRPATR 8 Unmodified _SPLRPATR_ 0 0 0 nc|ENSG00000185252|Q16587-5|ZNF74;ENST00000493734.5_1_22:20749431-20759943:+|nuORF nc|ENSG00000185252|Q16587-5|ZNF74 nc|ENSG00000185252|Q16587-5|ZNF74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 897.5258178710938 1 897.526476 896.519199 -0.34185 -0.00030682 -0.3435 -0.0003083 -0.68535 -0.00061512 897.5255780993419 103.27 0.16504 103.22 103.1 103.26 -0.047928 10 6 2 0 0 0 0.80232 1 57326 57326 5.2307 0 1 782870 60351 14321 40311 41213 70293 70293 0.06680026711455866 SPLRQCYL 8 Unmodified _SPLRQCYL_ 0 0 0 REV__ENST00000604822.1_1_4:153268030-153273825:-|nuORF REV__ENST00000604822.1_1_4:153268030-153273825:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.253662109375 2 490.25512 978.495686 NaN NaN NaN NaN NaN NaN NaN 45.279 1 40.324 39.824 40.824 -4.9549 0 0 0 0.69365 1 27768 27768 28.487 0.31361 1 + 60352 29289 40312 41214 70294 70294 0.005578448826213389 SPLRTKLTSAL 11 Unmodified _SPLRTKLTSAL_ 0 0 0 ENSG00000152778|ENST00000371795|IFIT5;nc|ENSG00000152778|Q13325-2|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 ENSG00000152778|ENST00000371795|IFIT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2446594238281 3 396.243317 1185.70812 0.17823 7.0621E-05 0.60308 0.00023897 0.78131 0.00030959 396.2436173943671 39.68 0.24695 39.686 39.564 39.811 0.0050545 28 11 3 0 0 0 0.51719 1 21128 21128 15.538 6.2947 1 2681800 60353 6214 40313 41215 70295 70295 0.122696344942824 SPLRTTSSY 9 Unmodified _SPLRTTSSY_ 0 0 0 nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.22802734375 2 506.258914 1010.50327 0.049246 2.4931E-05 -0.61612 -0.00031192 -0.56688 -0.00028699 506.2581371216992 23.232 0.10117 23.232 23.163 23.264 0 6 4 2 0 0 0 0.19496 1 11841 11841 13.906 1.3745 1 316210 60354 6982 40314 41216 70296 70296 -0.0015572431609598425 SPLSGSPSCVF 11 Unmodified _SPLSGSPSCVF_ 0 0 0 REV__ENST00000372491.3_1_9:131937866-131938148:-|nuORF REV__ENST00000372491.3_1_9:131937866-131938148:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7567138671875 2 540.755149 1079.49575 -0.5434 -0.00029385 -0.634 -0.00034284 -1.1774 -0.00063668 540.7548716318373 33.078 0.35242 33.078 32.851 33.203 0 32 17 3 0 0 0 0.18636 1 17295 17295 32.786 0 1 3944400 + 60355 26115 40315 41217 70297 70297 -0.04082199908043549 SPLSSHPVV 9 Unmodified _SPLSSHPVV_ 0 0 0 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7530822753906 2 461.753267 921.491981 0.75659 0.00034936 -1.5434 -0.00071268 -0.78683 -0.00036332 461.75267253413614 39.009 0.3427 34.558 34.361 34.704 -4.4509 35 21 2 0 0 0 0.03568 1 23066 23066 52.268 14.294 1 16233000 60356 5854 40316 41218 70298 70298 0.028094983804294316 SPLSSHPVV 9 Unmodified _SPLSSHPVV_ 0 0 0 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENST00000523091.5_1_8:23112705-23118098:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 461.753267 921.491981 -0.11557 -5.3363E-05 -0.090212 -4.1656E-05 -0.20578 -9.5019E-05 461.7534069000324 34.32 0.25177 34.32 34.19 34.442 0 -0.11931 0.00038666 NaN 52.268 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4381700 60357 5854 40316 41218 0.028094983804294316 SPLSSPNWLF 10 Unmodified _SPLSSPNWLF_ 0 0 0 REV__ENSG00000196867|ENST00000301318|ZFP28 REV__ENSG00000196867|ENST00000301318|ZFP28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2920532226562 2 574.292756 1146.57096 0.38377 0.0002204 -0.39785 -0.00022848 -0.014076 -8.0836E-06 574.2924015884562 76.749 0.30734 76.749 76.566 76.874 0 23 12 2 0 0 0 0.69626 1 42636 42636 6.2058 4.3615 1 1163400 + 60358 23877 40317 41219 70299 70299 0.0035372561469557695 SPLSSPNWLF 10 Unmodified _SPLSSPNWLF_ 0 0 0 REV__ENSG00000196867|ENST00000301318|ZFP28 REV__ENSG00000196867|ENST00000301318|ZFP28 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 574.292756 1146.57096 0.38377 0.0002204 -0.39785 -0.00022848 -0.014076 -8.0836E-06 574.2924015884562 76.749 0.30734 76.749 76.566 76.874 0 0 0 NaN 6.2058 23 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1163400 + 60359 23877 40317 41219 0.0035372561469557695 SPLSVSIAL 9 Unmodified _SPLSVSIAL_ 0 0 0 CON__Q9TTE1 CON__Q9TTE1 CON__Q9TTE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7657775878906 2 443.765843 885.517133 0.5476 0.00024301 -0.36326 -0.0001612 0.18434 8.1803E-05 443.7658739774294 76.608 0.63451 70.433 70.146 70.78 -6.1757 65 33 3 0 0 0 0.026094 1 50000 50000 57.471 6.6163 1 56932000 + 60360 214 40318 41220 70300 70300 0.0697955318298682 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2845764160156 2 473.2844 944.554247 0.40647 0.00019238 -0.45346 -0.00021462 -0.046991 -2.224E-05 473.2842193651344 48.691 0.26398 48.319 48.2 48.464 -0.37172 19 14 2 0 0 0 0.0088231 1 26132 26132 103.82 4.0683 1 6691000 60361 16379 40319 41221 70301 70301 0.079752247287729 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2832641601562 2 473.2844 944.554247 0.28267 0.00013378 -0.24858 -0.00011765 0.034096 1.6137E-05 473.2841539672512 48.398 0.19406 48.355 48.261 48.455 -0.04369 16 9 3 0 0 0 0.0085366 1 26097 26097 90.135 17.167 1 2534600 60362 16379 40319 41221 70302 70302 0.079752247287729 SPLTKSISL 9 Unmodified _SPLTKSISL_ 0 0 0 nc|ENSG00000170776|Q12802-2|AKAP13;nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 nc|ENSG00000170776|Q12802-2|AKAP13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2846984863281 2 473.2844 944.554247 1.2266 0.00058053 0.014929 7.0657E-06 1.2415 0.00058759 473.28444175838575 54.209 0.38184 48.344 48.118 48.5 -5.8653 52 21 3 0 0 0 0.0061279 2 34254 34254;34390 114.19 27.855 1 34921000 60363 16379 40319 41221 70303;70304 70303 0.079752247287729 SPLTWALGV 9 Unmodified _SPLTWALGV_ 0 0 0 ENST00000481123.1_1_7:139025293-139030447:+|nuORF ENST00000481123.1_1_7:139025293-139030447:+|nuORF ENST00000481123.1_1_7:139025293-139030447:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.2776184082031 2 472.26601 942.517468 NaN NaN NaN NaN NaN NaN NaN 39.173 1 34.722 34.222 35.222 -4.4509 0 0 0 0.023279 1 23217 23217 74.423 0.026461 1 60364 14072 40320 41222 70305 70305 0.04390972902854173 SPLVSFSA 8 Unmodified _SPLVSFSA_ 0 0 0 REV__ENST00000521367.5_1_5:141017057-141018376:+|nuORF REV__ENST00000521367.5_1_5:141017057-141018376:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 807.4251098632812 1 807.424696 806.417419 0.26776 0.00021619 1.474 0.0011901 1.7417 0.0014063 807.4257987222092 49.353 0.39889 49.353 49.042 49.441 0 30 18 2 0 0 0 0.55032 1 27019 27019 30.225 0 1 2449900 + 60365 27126 40321 41223 70306 70306 0.006467355690460863 SPLVSRLTL 9 Unmodified _SPLVSRLTL_ 0 0 0 nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000461665.5_1_7:75677478-75687456:+|nuORF nc|ENSG00000146701|P40926-2|MDH2 nc|ENSG00000146701|P40926-2|MDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.3049011230469 2 493.305667 984.596781 0.69335 0.00034203 -0.43082 -0.00021253 0.26253 0.00012951 493.30528968950983 58.965 0.28123 58.904 58.741 59.023 -0.060719 20 13 2 0 0 0 0.053952 1 32126 32126 43.982 11.196 1 2607000 60366 5790 40322 41224 70307 70307 0.10386619857001733 SPLVTSIAL 9 Unmodified _SPLVTSIAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 900.5384521484375 1 900.54006 899.532783 -0.14442 -0.00013006 -1.7236 -0.0015522 -1.868 -0.0016822 900.5405003821351 75.959 0.50741 75.482 75.235 75.742 -0.47714 45 21 3 0 0 0 0.016184 1 41505 41505 67.344 9.8725 1 2566900 60367 16188 40323 41225 70308 70308 0.07899839700041866 SPLVTSIAL 9 Unmodified _SPLVTSIAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7734069824219 2 450.773668 899.532783 NaN NaN NaN NaN NaN NaN NaN 75.805 1 75.327 74.827 75.827 -0.47714 0 0 0 0.020354 1 41498 41498 77.984 17.595 1 60368 16188 40323 41225 70309 70309 0.07899839700041866 SPLVTSIAL 9 Unmodified _SPLVTSIAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7738037109375 2 450.773668 899.532783 NaN NaN NaN NaN NaN NaN NaN 88.063 1 87.559 87.059 88.059 -0.50423 0 0 0 0.82396 1 48167 48167 4.756 0 1 60369 16188 40323 41225 70310 70310 0.07899839700041866 SPLVTSIAL 9 Unmodified _SPLVTSIAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7741088867188 2 450.773668 899.532783 1.0742 0.00048423 -0.26618 -0.00011999 0.80804 0.00036424 450.7735243096195 83.255 0.53608 77.079 76.808 77.345 -6.1757 64 28 3 0 0 0 0.0090851 2 54753 54620;54753 85.357 7.3724 1 24826000 60370 16188 40323 41225 70311;70312 70312 0.07899839700041866 SPLVTSIAL 9 Unmodified _SPLVTSIAL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 900.5398559570312 1 900.54006 899.532783 0.76289 0.00068702 -0.30598 -0.00027555 0.45691 0.00041147 900.539619039724 83.21 0.42458 77.034 76.863 77.287 -6.1757 34 22 2 0 0 0 0.0090851 2 54673 54673;54800 85.357 18.013 1 9270100 60371 16188 40323 41225 70313;70314 70313 0.07899839700041866 SPLWIDRQWQY 11 Unmodified _SPLWIDRQWQY_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000493216.1_1_22:20939554-20940988:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 746.3731689453125 2 746.372601 1490.73065 1.1795 0.00088035 -0.014827 -1.1066E-05 1.1647 0.00086928 746.3729041203848 70.769 0.32433 70.805 70.612 70.936 0.035515 36 14 3 0 0 0 0.0062377 1 38907 38907 73.196 60.154 1 7363500 60372 1720 40324 41226 70315 70315 0.004912338919211834 SPLWIDRQWQY 11 Unmodified _SPLWIDRQWQY_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000493216.1_1_22:20939554-20940988:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 746.3733520507812 2 746.372601 1490.73065 0.94364 0.00070431 -0.41336 -0.00030852 0.53027 0.00039578 746.372160777779 83.658 0.71876 77.482 77.192 77.91 -6.1757 57 37 2 0 0 0 0.0053109 2 55080 54928;55080 74.772 66.026 1 8330800 60373 1720 40324 41226 70316;70317 70317 0.004912338919211834 SPLYALDLY 9 Unmodified _SPLYALDLY_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.1866455078125 3 352.186697 1053.53826 -0.44793 -0.00015776 0.67781 0.00023872 0.22988 8.0961E-05 352.18699221676206 20.151 0.32757 20.18 19.936 20.264 0.028357 35 15 3 0 0 0 0.53557 1 10224 10224 5.2969 0.39987 1 3011600 + 60374 19721 40325 41227 70318 70318 0.01363518491848481 SPLYALDLY 9 Unmodified _SPLYALDLY_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7780151367188 2 527.776408 1053.53826 0.32324 0.0001706 0.6625 0.00034965 0.98573 0.00052025 527.7769055549359 22.833 0.33827 20.054 19.828 20.166 -2.7784 37 25 2 0 0 0 0.047788 1 12212 12212 34.102 17.16 1 4533800 + 60375 19721 40325 41227 70319 70319 0.01363518491848481 SPLYLVSRSL 10 Unmodified _SPLYLVSRSL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000483900.1_1_1:247015289-247040365:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.888671875 3 378.888763 1133.64446 NaN NaN NaN NaN NaN NaN NaN 18.659 1 18.665 18.165 19.165 0.0060463 0 0 0 0.80293 1 9465 9465 12.175 5.9829 1 60376 6247 40326 41228 70320 70320 0.0829827405721062 SPLYPGMLYV 10 Unmodified _SPLYPGMLYV_ 0 0 0 nc|ENSG00000178522|Q9NP70-2|AMBN;ENSG00000178522|ENST00000322937|AMBN nc|ENSG00000178522|Q9NP70-2|AMBN nc|ENSG00000178522|Q9NP70-2|AMBN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7335205078125 2 570.293911 1138.57327 1.7748 0.0010121 -3.7526 -0.0021401 -1.9779 -0.001128 570.2922517188583 92.878 0.36711 92.901 92.847 93.214 0.022987 21 14 2 0 0 0 0.23117 1 51681 51681 11.64 3.4848 1 2052700 60377 8758 40327 41229 70321 70321 0.009524380281618505 SPMADRSMM 9 Oxidation (M) _SPMADRSM(Oxidation (M))M_ SPM(0.001)ADRSM(0.499)M(0.499) SPM(-26)ADRSM(0)M(0) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2120971679688 2 521.211737 1040.40892 0.47718 0.00024871 -0.0081592 -4.2527E-06 0.46903 0.00024446 521.2118427720777 22.693 0.33647 19.914 19.722 20.058 -2.7784 35 24 2 0 0 0 0.069655 1 12171 12171 40.239 23.297 3 4696700 60378 6628;16309 40328 41230 70322 70322 1160;1161 -0.10966645725739 SPMADRSMM 9 Oxidation (M) _SPMADRSMM(Oxidation (M))_ SPMADRSM(0.081)M(0.918) SPM(-34)ADRSM(-11)M(11) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MSMS AL20221201_MKP_PDAC_01 4 521.2120361328125 2 521.211737 1040.40892 NaN NaN NaN NaN NaN NaN NaN 21.263 1 18.57 18.07 19.07 -2.693 0 0 0 0.097684 1 11366 11366 43.982 25.836 3 60379 6628;16309 40328 41230 70323 70323 1160;1161 -0.10966645725739 SPMADRSMM 9 Unmodified _SPMADRSMM_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2146606445312 2 513.21428 1024.41401 0.69428 0.00035631 0.0058698 3.0125E-06 0.70015 0.00035933 513.2144307905038 33.284 0.22177 29.299 29.18 29.402 -3.9853 17 12 2 0 0 0 0.030212 1 19058 19058 55.235 17.261 1 11992000 60380 6628;16309 40328 41231 70324 70324 -0.097223418631188 SPMAERSMM 9 Unmodified _SPMAERSMM_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2221069335938 2 520.222105 1038.42966 0.82683 0.00043014 -0.18432 -9.5888E-05 0.64251 0.00033425 520.2216174747659 33.178 0.25534 29.322 29.224 29.48 -3.8562 21 15 2 0 0 0 0.01085 1 19027 19027 78.06 41.933 1 11942000 60381 6628;16309 40329 41232 70325 70325 -0.0880205534608649 SPMAERSMM 9 Oxidation (M) _SPMAERSMM(Oxidation (M))_ SPMAERSM(0.077)M(0.923) SPM(-36)AERSM(-11)M(11) 0 0 1 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.6011352539062 2 528.219562 1054.42457 1.2231 0.00064605 -0.79518 -0.00042003 0.4279 0.00022603 528.2196237947493 21.608 0.35883 18.873 18.676 19.034 -2.7348 56 24 3 0 0 0 0.083914 1 11551 11551 45.74 23.993 3 3882600 60382 6628;16309 40329 41233 70326 70326 1162 -0.10046359208695321 SPMALFLKM 9 2 Oxidation (M) _SPM(Oxidation (M))ALFLKM(Oxidation (M))_ SPM(1)ALFLKM(1) SPM(96)ALFLKM(96) 0 0 2 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.275146484375 2 535.274664 1068.53477 0.25981 0.00013907 -2.1295 -0.0011399 -1.8697 -0.0010008 535.273754422379 48.844 0.52509 48.801 48.609 49.134 -0.04369 53 25 4 0 0 0 0.0082353 1 26334 26334 96.111 58.137 1 9272200 60383 6861 40330 41234 70327 70327 1188;1189 0.0032480912200298917 SPMALFLKM 9 2 Oxidation (M) _SPM(Oxidation (M))ALFLKM(Oxidation (M))_ SPM(1)ALFLKM(1) SPM(96)ALFLKM(96) 0 0 2 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.274658203125 2 535.274664 1068.53477 NaN NaN NaN NaN NaN NaN NaN 48.456 1 48.413 47.913 48.913 -0.04369 0 0 0 0.0084204 1 26142 26142 96.111 58.137 1 60384 6861 40330 41234 70328 70328 1188;1189 0.0032480912200298917 SPMALFLKM 9 Oxidation (M) _SPMALFLKM(Oxidation (M))_ SPMALFLKM(1) SPM(-52)ALFLKM(52) 0 0 1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.277099609375 2 527.277206 1052.53986 0.56705 0.00029899 0.92336 0.00048687 1.4904 0.00078586 527.277860281971 65.175 0.26327 65.175 64.978 65.241 1.5259E-05 21 12 2 0 0 0 0.028475 1 35695 35695 56.177 38.031 2 3402500 60385 6861 40330 41235 70329 70329 1188;1189 0.015691129845890828 SPMALFLKM 9 Unmodified _SPMALFLKM_ 0 0 0 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 ENSG00000162434|ENST00000342505|JAK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2796630859375 2 519.279749 1036.54494 1.6111 0.00083659 -0.97751 -0.0005076 0.63356 0.00032899 519.2793126685194 98.22 0.18149 92.044 91.952 92.134 -6.1757 30 11 3 0 0 0 0.0085164 1 65120 65120 99.799 53.778 1 59860000 60386 6861 40330 41236 70330 70330 0.02813416847220651 SPMAVLLHGLY 11 Unmodified _SPMAVLLHGLY_ 0 0 0 ENST00000579991.2_1_17:56166528-56166822:+|nuORF ENST00000579991.2_1_17:56166528-56166822:+|nuORF ENST00000579991.2_1_17:56166528-56166822:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.826171875 2 600.825909 1199.63727 -0.71864 -0.00043178 -3.5264 -0.0021187 -4.245 -0.0025505 600.8263164919086 98.89 0.13884 92.715 92.626 92.764 -6.1757 29 10 4 0 0 0 8.391E-09 1 65671 65671 111.29 81.062 1 74690000 60387 15554 40331 41237 70331 70331 0.045432181851310816 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(74)DIFDM(74)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7286987304688 2 567.727743 1133.44093 0.32267 0.00018319 0.14103 8.0065E-05 0.4637 0.00026326 567.7281346732148 79.614 0.70214 79.614 79.162 79.864 0 129 29 5 0 0 0 0.012148 2 44124 44026;44124 74.423 56.288 1 26285000 60388 1427 40332 41238 70332;70333 70333 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(74)DIFDM(74)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.728271484375 2 567.727743 1133.44093 0.32299 0.00018337 -0.3216 -0.00018258 0.0013948 7.9186E-07 567.7279514193928 80.364 0.70067 80.364 80.03 80.731 0 132 35 5 0 0 0 0.012148 3 44703 44509;44604;44703 74.423 51.274 1 23394000 60389 1427 40332 41238 70334;70335;70336 70336 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(64)DIFDM(64)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7286987304688 2 567.727743 1133.44093 1.1134 0.00063212 -0.48313 -0.00027429 0.63029 0.00035783 567.7277976257332 79.955 0.74874 79.465 79.235 79.984 -0.48932 136 30 6 0 0 0 0.019303 3 43922 43723;43826;43922 64.236 46.101 1 55735000 60390 1427 40332 41238 70337;70338;70339 70339 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(64)DIFDM(64)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.72802734375 2 567.727743 1133.44093 0.99014 0.00056213 -1.4135 -0.00080251 -0.4234 -0.00024038 567.7273120585231 80.969 1.0365 80.477 79.981 81.017 -0.49248 159 52 6 0 0 0 0.019303 3 44281 44185;44281;44380 64.236 46.101 1 51354000 60391 1427 40332 41238 70340;70341;70342 70341 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(74)DIFDM(74)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.72900390625 2 567.727743 1133.44093 0.39275 0.00022297 0.93904 0.00053312 1.3318 0.00075609 567.7285410714887 79.425 0.61828 79.48 79.284 79.902 0.05497 84 23 4 0 0 0 0.012148 3 43838 43838;43952;44058 74.423 57.48 1 28304000 60392 1427 40332 41238 70343;70344;70345 70343 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(67)DIFDM(67)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.727294921875 2 567.727743 1133.44093 0.29862 0.00016953 -0.40746 -0.00023133 -0.10884 -6.1792E-05 567.7272810783901 80.373 0.56358 80.43 80.198 80.762 0.057587 62 26 3 0 0 0 0.016184 1 44464 44464 67.344 54.812 1 27312000 60393 1427 40332 41238 70346 70346 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(64)DIFDM(64)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7284545898438 2 567.727743 1133.44093 1.1533 0.00065477 0.70582 0.00040071 1.8591 0.0010555 567.727701404122 87.351 0.68867 81.175 80.788 81.476 -6.1757 93 37 3 0 0 0 0.019303 1 57424 57424 64.236 41.088 1 54073000 60394 1427 40332 41238 70347 70347 237;238 -0.12044954770931326 SPMDIFDMF 9 2 Oxidation (M) _SPM(Oxidation (M))DIFDM(Oxidation (M))F_ SPM(1)DIFDM(1)F SPM(42)DIFDM(42)F 0 0 2 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.728271484375 2 567.727743 1133.44093 1.4316 0.00081276 0.19366 0.00010995 1.6253 0.0009227 567.7277565030308 88.185 0.64455 82.01 81.729 82.373 -6.1757 101 35 4 0 0 0 0.06187 1 58155 58155 42.095 29.563 1 74690000 60395 1427 40332 41238 70348 70348 237;238 -0.12044954770931326 SPMDIFDMF 9 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ SPMDIFDM(1)F SPM(-92)DIFDM(92)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7308349609375 2 559.730286 1117.44602 0.56795 0.0003179 -0.65308 -0.00036555 -0.085131 -4.765E-05 559.7302203544996 96.055 0.71253 95.75 95.418 96.131 -0.30472 147 41 5 0 0 0 0.0083087 2 52408 52408;52504 97.075 73.926 2 15369000 60396 1427 40332 41239 70349;70350 70349 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ SPM(1)DIFDMF SPM(73)DIFDM(-73)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.730712890625 2 559.730286 1117.44602 0.53474 0.00029931 1.1405 0.00063839 1.6753 0.0009377 559.7308746688641 99.072 0.24828 98.879 98.721 98.97 -0.19321 25 8 4 0 0 0 0.010877 1 54075 54075 77.984 59.849 2 4794400 60397 1427 40332 41239 70351 70351 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ SPM(1)DIFDMF SPM(73)DIFDM(-73)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.73046875 2 559.730286 1117.44602 0.53226 0.00029792 -0.11638 -6.5144E-05 0.41588 0.00023278 559.7302740375864 99.282 0.23097 99.107 98.96 99.191 -0.17484 18 7 4 0 0 0 0.010877 1 54200 54200 77.984 65.453 2 5115500 60398 1427 40332 41239 70352 70352 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ SPM(1)DIFDMF SPM(46)DIFDM(-46)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7323608398438 2 559.730286 1117.44602 4.5739 0.0025601 0.65952 0.00036915 5.2334 0.0029293 559.7305513812585 98.905 0.17203 98.877 98.776 98.948 -0.028282 16 5 5 0 0 0 0.042911 1 54943 54943 48.346 35.814 2 6107300 60399 1427 40332 41239 70353 70353 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ SPM(1)DIFDMF SPM(63)DIFDM(-63)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7335205078125 2 559.730286 1117.44602 4.7377 0.0026518 1.5528 0.00086913 6.2905 0.003521 559.7310038736349 99.15 0.21364 99.121 99.003 99.216 -0.028282 20 7 4 0 0 0 0.016184 1 55074 55074 67.344 54.812 2 4347300 60400 1427 40332 41239 70354 70354 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPMDIFDM(Oxidation (M))F_ SPMDIFDM(1)F SPM(-81)DIFDM(81)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7306518554688 2 559.730286 1117.44602 1.3334 0.00074634 -0.69645 -0.00038982 0.63695 0.00035652 559.7301405863536 100.38 0.24183 94.204 94.088 94.33 -6.1757 56 14 5 0 0 0 0.0090851 1 67047 67047 85.357 67.222 2 634410000 60401 1427 40332 41239 70355 70355 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ SPM(1)DIFDMF SPM(53)DIFDM(-53)F 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.731201171875 2 559.730286 1117.44602 1.8312 0.001025 -0.61553 -0.00034453 1.2157 0.00068046 559.7300489974123 100.91 0.24709 94.734 94.584 94.831 -6.1757 53 15 5 0 0 0 0.026094 1 67540 67540 57.471 48.878 2 193750000 60402 1427 40332 41239 70356 70356 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 559.730286 1117.44602 0.38921 0.00021785 1.6041 0.00089787 1.9933 0.0011157 559.7309062146757 99.115 0.10607 99.115 99.047 99.153 0 0.00061661 0.0011861 NaN 77.984 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 414330 60403 1427 40332 41239 237;238 -0.10800650908345233 SPMDIFDMF 9 Oxidation (M) _SPM(Oxidation (M))DIFDMF_ 0 0 1 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 559.730286 1117.44602 0.38972 0.00021814 2.2169 0.0012409 2.6066 0.001459 559.7308160261549 98.867 0.14389 98.867 98.787 98.931 0 -0.0074806 0.0012508 NaN 77.984 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 462460 60404 1427 40332 41239 237;238 -0.10800650908345233 SPMDIFDMF 9 Unmodified _SPMDIFDMF_ 0 0 0 nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;ENST00000485075.1_1_15:78562865-78566840:+|nuORF;nc|ENSG00000140403|Q8WW22-3|DNAJA4;ENSG00000140403|ENST00000394852|DNAJA4;nc|ENSG00000140403|Q8WW22-2|DNAJA4 nc|ENSG00000086061|P31689-2|DNAJA1 nc|ENSG00000086061|P31689-2|DNAJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7328491210938 2 551.732828 1101.4511 0.7498 0.00041369 -1.0231 -0.00056446 -0.27327 -0.00015077 551.7325676923705 102 0.16264 95.822 95.735 95.898 -6.1757 26 7 5 0 0 0 0.016184 1 68458 68458 67.344 59.434 1 136880000 60405 1427 40332 41240 70357 70357 -0.09556347045713665 SPMEEREKL 9 Unmodified _SPMEEREKL_ 0 0 0 nc|ENSG00000096872|Q96LB3-2|IFT74;ENSG00000096872|ENST00000380062|IFT74 nc|ENSG00000096872|Q96LB3-2|IFT74 nc|ENSG00000096872|Q96LB3-2|IFT74 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.8412780761719 3 373.521863 1117.54376 0.78534 0.00029334 0.25556 9.5457E-05 1.0409 0.0003888 373.5220077106107 24.152 0.19625 21.325 21.213 21.41 -2.8273 15 10 2 0 0 0 0.20428 1 13145 13145 11.518 6.989 1 2445200 60406 1677 40333 41241 70358 70358 -0.010311259879699719 SPMESTQSL 9 Oxidation (M) _SPM(Oxidation (M))ESTQSL_ SPM(1)ESTQSL SPM(64)ESTQSL 0 0 1 nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;ENSG00000131242|ENST00000621161|RAB11FIP4 nc|ENSG00000131242|Q86YS3-2|RAB11FIP4 nc|ENSG00000131242|Q86YS3-2|RAB11FIP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2213439941406 2 498.221139 994.427726 -0.155 -7.7225E-05 -0.31447 -0.00015668 -0.46947 -0.0002339 498.221060529698 24.291 0.57683 24.291 23.995 24.572 0 80 32 3 0 0 0 0.019303 1 12446 12446 64.236 30.134 1 2858300 60407 4312 40334 41242 70359 70359 779 -0.06971069558653653 SPMEVGKKL 9 Unmodified _SPMEVGKKL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENST00000513816.1_1_4:160251066-160251677:+|nuORF ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.8117370605469 2 494.778428 987.542302 0.59999 0.00029686 -0.80407 -0.00039784 -0.20409 -0.00010098 494.77805425259123 28.264 0.24526 25.116 24.967 25.212 -3.1482 17 12 2 0 0 0 0.04771 1 15729 15729 41.956 10.687 1 5103600 60408 2669 40335 41243 70360 70360 0.0480328471392113 SPMGLVPSPL 10 Unmodified _SPMGLVPSPL_ 0 0 0 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 REV__nc|ENSG00000144406|Q8N2C7-2|UNC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2751159667969 2 499.272978 996.531403 0.27582 0.00013771 3.7021 0.0018483 3.9779 0.0019861 499.27541918997565 23.457 0.12682 20.661 20.594 20.721 -2.7961 9 6 2 0 0 0 0.44373 1 12724 12724 19.257 0 1 1149200 + 60409 20705 40336 41244 70361 70361 0.03299882339638316 SPMNHSVQM 9 Oxidation (M) _SPMNHSVQM(Oxidation (M))_ SPMNHSVQM(1) SPM(-79)NHSVQM(79) 0 0 1 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7219848632812 2 523.723326 1045.4321 0.4588 0.00024029 -0.69543 -0.00036421 -0.23662 -0.00012393 523.7231494400928 17.309 0.21889 14.722 14.597 14.816 -2.5866 56 32 3 0 0 0 0.0089732 1 8996 8996 86.332 48.358 2 4438000 60410 306 40337 41245 70362 70362 29;30 -0.08879883616782536 SPMNHSVQM 9 Oxidation (M) _SPM(Oxidation (M))NHSVQM_ SPM(1)NHSVQM SPM(60)NHSVQM(-60) 0 0 1 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7230834960938 2 523.723326 1045.4321 1.2411 0.00065 -0.57396 -0.0003006 0.66716 0.00034941 523.7230530885579 20.818 0.52109 18.125 17.95 18.471 -2.693 37 31 2 0 0 0 0.018301 2 11066 11066;11186 65.235 44.781 2 2201600 60411 306 40337 41245 70363;70364 70363 29;30 -0.08879883616782536 SPMNRTPVL 9 Oxidation (M) _SPM(Oxidation (M))NRTPVL_ SPM(1)NRTPVL SPM(42)NRTPVL 0 0 1 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7725830078125 2 515.771134 1029.52771 1.3423 0.00069231 0.64917 0.00033482 1.9915 0.0010271 515.7715455107027 33.787 0.50993 29.802 29.572 30.082 -3.9853 83 27 4 0 0 0 0.060956 1 19338 19338 42.312 7.3804 1 22090000 60412 10721 40338 41246 70365 70365 1715 0.014132125657624783 SPMNRTPVL 9 Unmodified _SPMNRTPVL_ 0 0 0 nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 nc|ENSG00000243989|Q03154-3|ACY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7733154296875 2 507.773677 1013.5328 0.59712 0.0003032 -2.0179 -0.0010246 -1.4208 -0.00072143 507.77251285564347 43.126 0.31598 38.361 38.146 38.462 -4.7648 33 20 2 0 0 0 0.11005 1 26082 26082 32.037 7.0465 1 28161000 60413 10721 40338 41247 70366 70366 0.02657516428382678 SPMSADRVVAF 11 Oxidation (M) _SPM(Oxidation (M))SADRVVAF_ SPM(1)SADRVVAF SPM(79)SADRVVAF 0 0 1 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.292236328125 2 598.29243 1194.57031 0.47463 0.00028397 -0.81891 -0.00048995 -0.34427 -0.00020598 598.2918962060421 42.97 0.32322 42.97 42.798 43.121 0 52 16 4 0 0 0 0.0030527 2 23257 23257;23373 78.61 52.342 1 33502000 60414 9381 40339 41248 70367;70368 70367 1543 -0.01919437096648835 SPMSADRVVAF 11 Oxidation (M) _SPM(Oxidation (M))SADRVVAF_ SPM(1)SADRVVAF SPM(79)SADRVVAF 0 0 1 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2918090820312 2 598.29243 1194.57031 0.23523 0.00014074 0.34568 0.00020682 0.58091 0.00034755 598.2924941316015 43.217 0.30685 42.907 42.759 43.066 -0.31039 35 14 4 0 0 0 0.0030527 1 22975 22975 78.61 52.342 1 16157000 60415 9381 40339 41248 70369 70369 1543 -0.01919437096648835 SPMSADRVVAF 11 Oxidation (M) _SPM(Oxidation (M))SADRVVAF_ SPM(1)SADRVVAF SPM(87)SADRVVAF 0 0 1 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.2926635742188 2 598.29243 1194.57031 0.69455 0.00041554 -0.27658 -0.00016548 0.41797 0.00025007 598.292405285241 47.83 0.43095 42.596 42.403 42.834 -5.2339 50 26 2 0 0 0 0.00064514 2 29669 29669;29813 87.123 54.338 1 46594000 60416 9381 40339 41248 70370;70371 70370 1543 -0.01919437096648835 SPMSADRVVAF 11 Unmodified _SPMSADRVVAF_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2962036132812 2 590.294973 1178.57539 0.56529 0.00033369 0.78946 0.00046601 1.3548 0.0007997 590.2955751518479 52.339 0.23565 51.905 51.749 51.985 -0.43367 27 11 3 0 0 0 0.038129 1 28245 28245 53.47 33.016 1 3724900 60417 9381 40339 41249 70372 70372 -0.006751332340172667 SPMSADRVVAF 11 Unmodified _SPMSADRVVAF_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2953491210938 2 590.294973 1178.57539 0.1197 7.0657E-05 0.45083 0.00026612 0.57053 0.00033678 590.2954468818925 58.037 0.47779 52.01 51.787 52.265 -6.0275 55 26 3 0 0 0 0.00064514 2 37076 37076;37213 87.123 50.617 1 49010000 60418 9381 40339 41249 70373;70374 70373 -0.006751332340172667 SPMSDASVNF 10 Unmodified _SPMSDASVNF_ 0 0 0 ENSG00000124177|ENST00000373233|CHD6;nc|ENSG00000124177|Q8TD26-2|CHD6;nc|ENSG00000124177|Q8TD26-3|CHD6 ENSG00000124177|ENST00000373233|CHD6 ENSG00000124177|ENST00000373233|CHD6 MSMS AL20221201_MKP_PDAC_01 4 527.7319946289062 2 527.729132 1053.44371 NaN NaN NaN NaN NaN NaN NaN 97.209 1 91.034 90.534 91.534 -6.1757 0 0 0 0.47175 1 64426 64426 27.629 3.6082 1 60419 3755 40340 41250 70375 70375 -0.08087363321783414 SPMSVNAVM 9 2 Oxidation (M) _SPM(Oxidation (M))SVNAVM(Oxidation (M))_ SPM(1)SVNAVM(1) SPM(82)SVNAVM(82) 0 0 2 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2149047851562 2 484.214803 966.415053 -0.15254 -7.386E-05 -0.48373 -0.00023423 -0.63627 -0.00030809 484.2150631634677 22.27 0.42998 22.27 22.035 22.465 0 53 21 3 0 0 0 0.0095811 1 11334 11334 81.613 55.272 1 2231800 60420 3127 40341 41251 70376 70376 551;552 -0.06949804222563216 SPMSVNAVM 9 2 Oxidation (M) _SPM(Oxidation (M))SVNAVM(Oxidation (M))_ SPM(1)SVNAVM(1) SPM(78)SVNAVM(78) 0 0 2 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MSMS AL20221201_MKP_PDAC_01 4 484.2152404785156 2 484.214803 966.415053 NaN NaN NaN NaN NaN NaN NaN 26.12 1 23.168 22.668 23.668 -2.9511 0 0 0 0.020219 1 14357 14357 78.149 51.808 1 60421 3127 40341 41251 70377 70377 551;552 -0.06949804222563216 SPMSVNAVM 9 Oxidation (M) _SPMSVNAVM(Oxidation (M))_ SPMSVNAVM(1) SPM(-110)SVNAVM(110) 0 0 1 nc|ENSG00000115484|P50991-2|CCT4;ENSG00000115484|ENST00000394440|CCT4 nc|ENSG00000115484|P50991-2|CCT4 nc|ENSG00000115484|P50991-2|CCT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2184448242188 2 476.217346 950.420138 0.70543 0.00033594 -0.58489 -0.00027854 0.12054 5.7402E-05 476.2172132667851 40.533 0.35447 36.004 35.858 36.212 -4.5294 42 21 3 0 0 0 0.0083938 2 24169 24169;24302 108 63.59 2 12300000 60422 3127 40341 41252 70378;70379 70378 551;552 -0.057055003599430165 SPMYGVQKY 9 Oxidation (M) _SPM(Oxidation (M))YGVQKY_ SPM(1)YGVQKY SPM(65)YGVQKY 0 0 1 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7572631835938 2 544.757692 1087.50083 -0.43105 -0.00023482 1.4264 0.00077704 0.99534 0.00054222 545.2601392651725 26.79 0.42187 26.79 26.53 26.952 0 42 19 4 0 0 0 0.018301 1 13778 13778 65.235 49.388 1 3182300 60423 7373 40342 41253 70380 70380 1274 -0.039418960453986074 SPNAEIHIL 9 Unmodified _SPNAEIHIL_ 0 0 0 nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22;ENST00000565736.1_1_16:29814793-29815446:+|nuORF nc|ENSG00000079616|Q14807-2|KIF22 nc|ENSG00000079616|Q14807-2|KIF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2717895507812 2 497.271824 992.529095 0.47605 0.00023673 0.1342 6.6733E-05 0.61024 0.00030346 497.27185999591075 51.561 0.38239 51.561 51.348 51.73 0 50 17 4 0 0 0 0.0013034 2 28430 28430;28541 137.42 69.343 1 26028000 60424 1281 40343 41254 70381;70382 70381 0.03253169926199462 SPNAIFKAL 9 Unmodified _SPNAIFKAL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7793273925781 2 480.779285 959.544017 0.42979 0.00020664 -0.50295 -0.00024181 -0.073159 -3.5173E-05 480.7790128247986 59.675 0.30478 59.184 59.028 59.333 -0.49079 36 14 3 0 0 0 0.013609 2 32521 32418;32521 70.332 37.375 1 5860200 60425 3847 40344 41255 70383;70384 70384 0.06262661794164615 SPNAIFKAL 9 Unmodified _SPNAIFKAL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7793579101562 2 480.779285 959.544017 0.37837 0.00018191 -0.35706 -0.00017167 0.021311 1.0246E-05 480.77922755526527 59.339 0.42938 59.286 59.03 59.46 -0.053062 50 21 3 0 0 0 0.0061223 2 32278 32278;32380 114.2 70.343 1 27105000 60426 3847 40344 41255 70385;70386 70385 0.06262661794164615 SPNAIFKAL 9 Unmodified _SPNAIFKAL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7796020507812 2 480.779285 959.544017 1.4455 0.00069494 -0.68036 -0.0003271 0.76509 0.00036784 480.7789942978059 64.548 0.59418 58.372 58.072 58.666 -6.1757 90 32 4 0 0 0 0.0032147 3 41818 41683;41818;41951 125.53 81.671 1 110160000 60427 3847 40344 41255 70387;70388;70389 70388 0.06262661794164615 SPNAKEFVY 9 Unmodified _SPNAKEFVY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7650146484375 2 527.763832 1053.51311 0.44084 0.00023266 1.0686 0.00056397 1.5094 0.00079663 527.7642474990012 38.027 0.33784 38.027 37.846 38.184 0 66 16 5 0 0 0 0.014182 1 20253 20253 69.338 27.499 1 55858000 60428 9206 40345 41256 70390 70390 -0.011505363107289668 SPNAKEFVY 9 Unmodified _SPNAKEFVY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7643432617188 2 527.763832 1053.51311 1.0216 0.00053914 0.0070461 3.7187E-06 1.0286 0.00054286 527.7638836767165 42.519 0.41716 37.834 37.592 38.009 -4.6846 75 27 3 0 0 0 0.01861 1 25722 25722 64.927 38.043 1 80065000 60429 9206 40345 41256 70391 70391 -0.011505363107289668 SPNDEDGSLCY 11 Unmodified _SPNDEDGSLCY_ 0 0 0 REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22 REV__nc|ENSG00000211661|A0A075B6J6|IGLV3-22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.4887084960938 3 400.488887 1198.44483 NaN NaN NaN NaN NaN NaN NaN 27.475 1 27.475 26.975 27.975 0 0 0 0 0.93893 1 14156 14156 1.3296 0.36737 1 + 60430 29925 40346 41257 70392 70392 -0.14645193743513119 SPNDFSVSL 9 Unmodified _SPNDFSVSL_ 0 0 0 ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1 ENSG00000158092|ENST00000481752|NCK1 ENSG00000158092|ENST00000481752|NCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4580688476562 1 965.457453 964.450176 0.061852 5.9715E-05 0.60114 0.00058038 0.66299 0.00064009 965.4579500047518 61.895 0.24537 61.895 61.798 62.044 0 20 10 2 0 0 0 0.013041 1 34488 34488 71.922 46.523 1 1447600 60431 6564 40347 41258 70393 70393 -0.03347102098746291 SPNDGLITM 9 Oxidation (M) _SPNDGLITM(Oxidation (M))_ SPNDGLITM(1) SPNDGLITM(42) 0 0 1 ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 ENSG00000173702|ENST00000616727|MUC13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2265014648438 2 482.226225 962.437897 NaN NaN NaN NaN NaN NaN NaN 35.051 1 35.051 34.551 35.551 0 0 0 0 0.10759 1 18511 18511 41.84 13.666 1 60432 8357 40348 41259 70394 70394 1411 -0.0448246183344736 SPNEFKVYM 9 Oxidation (M) _SPNEFKVYM(Oxidation (M))_ SPNEFKVYM(1) SPNEFKVYM(57) 0 0 1 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7623291015625 2 565.762975 1129.5114 0.7961 0.00045041 -0.68722 -0.00038881 0.10888 6.16E-05 565.7627165519585 36.489 0.39932 36.489 36.311 36.71 0 46 19 3 0 0 0 0.026499 1 19389 19389 57.249 35.712 1 7941200 60433 4504 40349 41260 70395 70395 820 -0.04817913390979811 SPNEFKVYM 9 Oxidation (M) _SPNEFKVYM(Oxidation (M))_ SPNEFKVYM(1) SPNEFKVYM(46) 0 0 1 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7631225585938 2 565.762975 1129.5114 -0.1981 -0.00011208 0.43053 0.00024358 0.23243 0.0001315 565.7633043790388 36.769 0.26161 36.519 36.383 36.644 -0.2497 17 11 2 0 0 0 0.047714 1 19324 19324 45.74 32.697 1 3063200 60434 4504 40349 41260 70396 70396 820 -0.04817913390979811 SPNEFKVYM 9 Oxidation (M) _SPNEFKVYM(Oxidation (M))_ 0 0 1 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 565.762975 1129.5114 0.90668 0.00051297 1.1395 0.00064469 2.0462 0.0011577 565.763955210612 41.153 0.070122 36.545 36.513 36.583 -4.6079 0.027369 0.0014606 NaN 57.249 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 4564700 60435 4504 40349 41260 820 -0.04817913390979811 SPNEFKVYM 9 Unmodified _SPNEFKVYM_ 0 0 0 nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000577409.1_1_18:72183591-72185955:+|nuORF nc|ENSG00000133313|Q96KP4-2|CNDP2 nc|ENSG00000133313|Q96KP4-2|CNDP2 MSMS AL20221201_MKP_PDAC_01 4 557.7664184570312 2 557.765517 1113.51648 NaN NaN NaN NaN NaN NaN NaN 56.64 1 50.664 50.164 51.164 -5.9769 0 0 0 0.024286 1 36161 36161 73.196 38.795 1 60436 4504 40349 41261 70397 70397 -0.03573609528348243 SPNGTIRNIL 10 Unmodified _SPNGTIRNIL_ 0 0 0 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.8095703125 2 542.809105 1083.60366 0.43885 0.00023821 0.28308 0.00015366 0.72194 0.00039187 542.8092633556748 47.476 0.30672 47.123 46.959 47.266 -0.3526 33 14 3 0 0 0 0.0030316 2 25419 25419;25517 104.48 42.882 1 15857000 60437 5051;9012 40350 41262 70398;70399 70398 0.06519932737569434 SPNGTIRNIL 10 Unmodified _SPNGTIRNIL_ 0 0 0 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8099365234375 2 542.809105 1083.60366 0.93932 0.00050987 0.68935 0.00037418 1.6287 0.00088405 542.8092874635217 47.172 0.23299 47.138 47.052 47.285 -0.033421 16 11 2 0 0 0 0.16005 1 25434 25434 38.615 18.2 1 2855700 60438 5051;9012 40350 41262 70400 70400 0.06519932737569434 SPNGTIRNIL 10 Unmodified _SPNGTIRNIL_ 0 0 0 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2 ENST00000462386.5_1_2:209112975-209118617:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8103637695312 2 542.809105 1083.60366 0.71085 0.00038585 -1.4975 -0.00081285 -0.78664 -0.00042699 542.8096172394719 52.526 0.38019 46.792 46.58 46.96 -5.7345 29 20 2 0 0 0 3.9043E-08 2 33095 33095;33206 147.24 47.485 1 54099000 60439 5051;9012 40350 41262 70401;70402 70401 0.06519932737569434 SPNHKLLQY 9 Unmodified _SPNHKLLQY_ 0 0 0 nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2027282714844 3 367.201341 1098.58219 0.53284 0.00019566 0.52863 0.00019411 1.0615 0.00038977 367.20146475556464 27.976 0.21598 27.93 27.797 28.013 -0.046408 15 7 3 0 0 0 0.28023 1 14419 14419 17.443 0 1 11267000 60440 2075 40351 41263 70403 70403 0.03684547708849095 SPNHKLLQY 9 Unmodified _SPNHKLLQY_ 0 0 0 nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 MSMS AL20221201_MKP_PDAC_01 4 550.3001708984375 2 550.298373 1098.58219 NaN NaN NaN NaN NaN NaN NaN 31.029 1 27.532 27.032 28.032 -3.497 0 0 0 0.016921 1 17545 17545 110.67 59.045 1 60441 2075 40351 41263 70404 70404 0.03684547708849095 SPNIAVFDL 9 Unmodified _SPNIAVFDL_ 0 0 0 REV__ENST00000505072.5_1_3:130613078-130649282:+|nuORF REV__ENST00000505072.5_1_3:130613078-130649282:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2615356445312 2 488.260925 974.507297 NaN NaN NaN NaN NaN NaN NaN 75.735 1 75.258 74.758 75.758 -0.47714 0 0 0 0.76439 1 41459 41459 7.2892 0 1 + 60442 28064 40352 41264 70405 70405 0.01902365177613774 SPNIPPVGLPV 11 Unmodified _SPNIPPVGLPV_ 0 0 0 nc|ENSG00000169554|O60315-2|ZEB2;ENSG00000169554|ENST00000627532|ZEB2 nc|ENSG00000169554|O60315-2|ZEB2 nc|ENSG00000169554|O60315-2|ZEB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3175659179688 2 545.318774 1088.623 NaN NaN NaN NaN NaN NaN NaN 78.812 1 78.867 78.367 79.367 0.05497 0 0 0 0.73356 1 43531 43531 15.248 2.7169 1 60443 7883 40353 41265 70406 70406 0.08222889028479585 SPNKLYTL 8 Unmodified _SPNKLYTL_ 0 0 0 ENST00000480540.1_1_14:59261390-59261744:+|nuORF;nc|ENSG00000071082|P62899-3|RPL31;ENSG00000071082|ENST00000264258|RPL31;nc|ENSG00000071082|P62899-2|RPL31 ENST00000480540.1_1_14:59261390-59261744:+|nuORF ENST00000480540.1_1_14:59261390-59261744:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2636413574219 2 468.263468 934.512382 -0.16105 -7.5414E-05 -0.08413 -3.9395E-05 -0.24518 -0.00011481 468.2633288462627 41.213 0.22237 41.213 41.082 41.304 0 14 10 2 0 0 0 0.40602 1 22211 22211 43.858 16.975 1 1359600 60444 1051 40354 41266 70407 70407 0.04250669040231969 SPNLRLLDL 9 Unmodified _SPNLRLLDL_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.8087158203125 2 520.808574 1039.60259 0.592 0.00030832 0.19629 0.00010223 0.78829 0.00041055 520.8086739369008 73.158 0.48715 72.683 72.407 72.894 -0.47588 65 21 4 0 0 0 0.0081 2 40060 39965;40060 93.938 40.534 1 16874000 60445 9045 40355 41267 70408;70409 70409 0.08437718368668357 SPNLRLLDL 9 Unmodified _SPNLRLLDL_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8089599609375 2 520.808574 1039.60259 0.005152 2.6832E-06 0.48737 0.00025382 0.49252 0.00025651 520.8085643024646 72.535 0.38341 72.577 72.42 72.803 0.041733 49 17 4 0 0 0 0.030212 2 39937 39937;40044 55.235 26.74 1 9771000 60446 9045 40355 41267 70410;70411 70410 0.08437718368668357 SPNLRLLDL 9 Unmodified _SPNLRLLDL_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.8092041015625 2 520.808574 1039.60259 NaN NaN NaN NaN NaN NaN NaN 90.212 1 84.036 83.536 84.536 -6.1757 0 0 0 0.015528 1 59572 59572 84.522 38.782 1 60447 9045 40355 41267 70412 70412 0.08437718368668357 SPNLRLLDL 9 Unmodified _SPNLRLLDL_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.808837890625 2 520.808574 1039.60259 NaN NaN NaN NaN NaN NaN NaN 90.389 1 84.213 83.713 84.713 -6.1757 0 0 0 0.046779 1 59705 59705 59.052 17.213 1 60448 9045 40355 41267 70413 70413 0.08437718368668357 SPNLRLLDL 9 Unmodified _SPNLRLLDL_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.808574 1039.60259 0.57853 0.0003013 -0.37067 -0.00019305 0.20786 0.00010826 520.8080743178482 72.749 0.18472 72.749 72.676 72.861 0 0.079464 -0.00064556 NaN 93.938 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 429630 60449 9045 40355 41267 0.08437718368668357 SPNMLVYRKM 10 Unmodified _SPNMLVYRKM_ 0 0 0 nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-3|RGS7;ENSG00000182901|ENST00000440928|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-5|RGS7 nc|ENSG00000182901|P49802-4|RGS7 nc|ENSG00000182901|P49802-4|RGS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5508728027344 3 413.550988 1237.63113 -0.44773 -0.00018516 -0.44816 -0.00018534 -0.89589 -0.00037049 413.88506800597577 21.695 0.20827 21.695 21.603 21.811 0 42 32 2 0 0 0 0.6966 2 10972 10972;10980 1.5923 1.5923 1 1252200 60450 9099 40356 41268 70414;70415 70414 0.021823766819352386 SPNNFLSYY 9 Unmodified _SPNNFLSYY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7523803710938 2 552.753464 1103.49238 NaN NaN NaN NaN NaN NaN NaN 67.558 1 67.558 67.058 68.058 0 0 0 0 0.43483 1 37673 37673 18.146 8.0724 1 60451 2702 40357 41269 70416 70416 -0.05523126690377467 SPNNFLSYY 9 Unmodified _SPNNFLSYY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.752197265625 2 552.753464 1103.49238 0.76697 0.00042394 -2.3715 -0.0013109 -1.6046 -0.00088693 552.7527007599283 68.053 0.59546 67.571 67.346 67.942 -0.48218 51 27 4 0 0 0 0.06294 2 37132 37132;37233 41.84 21.386 1 35257000 60452 2702 40357 41269 70417;70418 70417 -0.05523126690377467 SPNNFLSYY 9 Unmodified _SPNNFLSYY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7530517578125 2 552.753464 1103.49238 0.33467 0.00018499 -1.5393 -0.00085087 -1.2047 -0.00066588 552.7526467742177 67.552 0.35233 67.57 67.435 67.787 0.018036 30 17 2 0 0 0 0.013041 1 37114 37114 71.922 28.064 1 4915300 60453 2702 40357 41269 70419 70419 -0.05523126690377467 SPNNFLSYY 9 Unmodified _SPNNFLSYY_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7543334960938 2 552.753464 1103.49238 0.90206 0.00049862 0.40539 0.00022408 1.3075 0.0007227 552.7538131902547 73.937 0.67142 67.761 67.407 68.079 -6.1757 91 33 4 0 0 0 0.009483 3 48420 48183;48302;48420 81.89 45.763 1 105600000 60454 2702 40357 41269 70420;70421;70422 70422 -0.05523126690377467 SPNPEIPAL 9 Unmodified _SPNPEIPAL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2548522949219 2 469.2531 936.491647 0.68048 0.00031932 0.33098 0.00015531 1.0115 0.00047463 469.253318019473 60.851 0.44475 60.851 60.625 61.069 0 28 18 2 0 0 0 0.28023 1 33920 33920 18.146 6.5061 1 1190300 60455 7904 40358 41270 70423 70423 0.020860786605567228 SPNPFVHEL 9 Unmodified _SPNPFVHEL_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656349-34659376:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2650756835938 2 520.263999 1038.51345 0.83774 0.00043584 -0.17105 -8.8992E-05 0.66669 0.00034685 520.2642656637757 51.408 0.26808 51.408 51.254 51.522 0 23 11 3 0 0 0 0.19127 1 28395 28395 24.021 10.115 1 2909600 60456 8595 40359 41271 70424 70424 -0.0042711659086762666 SPNPFVHEL 9 Unmodified _SPNPFVHEL_ 0 0 0 ENSG00000176454|ENST00000314891|LPCAT4;ENST00000566581.5_1_15:34656349-34659376:-|nuORF ENSG00000176454|ENST00000314891|LPCAT4 ENSG00000176454|ENST00000314891|LPCAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2652587890625 2 520.263999 1038.51345 0.18497 9.6236E-05 0.065029 3.3833E-05 0.25 0.00013007 520.2640052831713 51.905 0.2263 51.471 51.364 51.59 -0.43367 20 11 2 0 0 0 0.091924 1 28018 28018 34.932 18.783 1 2921200 60457 8595 40359 41271 70425 70425 -0.0042711659086762666 SPNPYQTAVY 10 Unmodified _SPNPYQTAVY_ 0 0 0 ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2728881835938 2 570.272021 1138.52949 1.133 0.00064611 -0.11572 -6.599E-05 1.0173 0.00058012 570.2722560620642 42.731 0.26505 42.731 42.605 42.87 0 19 13 2 0 0 0 0.1899 1 23146 23146 34.932 8.6639 1 3881500 60458 6163 40360 41272 70426 70426 -0.03423455144616128 SPNQARAQAAL 11 Unmodified _SPNQARAQAAL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.8019409179688 2 563.801811 1125.58907 -0.12613 -7.1112E-05 0.95668 0.00053938 0.83055 0.00046827 563.8023656690717 22.148 0.2783 22.148 22.005 22.283 0 35 14 3 0 0 0 0.073778 2 11212 11212;11314 45.74 24.203 1 5482100 60459 443 40361 41273 70427;70428 70427 0.03129860589410782 SPNQARAQAAL 11 Unmodified _SPNQARAQAAL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8026123046875 2 563.801811 1125.58907 0.0023237 1.3101E-06 1.7662 0.0009958 1.7685 0.00099711 563.8027585430623 22.08 0.20585 22.102 21.958 22.164 0.022896 12 8 2 0 0 0 0.56973 1 11221 11221 12.873 6.2422 1 776530 60460 443 40361 41273 70429 70429 0.03129860589410782 SPNQARAQAAL 11 Unmodified _SPNQARAQAAL_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.8020629882812 2 563.801811 1125.58907 0.38736 0.00021839 -0.56581 -0.000319 -0.17845 -0.00010061 563.8018103785354 24.713 0.42938 21.83 21.578 22.008 -2.8831 84 24 5 0 0 0 0.00053139 2 13504 13393;13504 88.364 66.827 1 26420000 60461 443 40361 41273 70430;70431 70431 0.03129860589410782 SPNQKLLAV 9 Unmodified _SPNQKLLAV_ 0 0 0 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 ENSG00000065183|ENST00000349139|WDR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2894897460938 2 485.290017 968.565481 NaN NaN NaN NaN NaN NaN NaN 41.008 1 40.705 40.205 41.205 -0.30304 0 0 0 0.41346 1 21702 21702 19.257 7.6167 1 60462 894 40362 41274 70432 70432 0.07994046822898326 SPNQLCKVFL 10 Unmodified _SPNQLCKVFL_ 0 0 0 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8779907226562 3 383.542598 1147.60597 1.6224 0.00062226 1.0215 0.0003918 2.6439 0.0010141 383.8769201429676 21.374 0.070845 18.64 18.595 18.666 -2.7348 12 9 2 0 0 0 0.52888 1 11447 11447 8.9762 1.0308 1 2241000 + 60463 17834 40363 41275 70433 70433 0.03806645151030352 SPNQSLRLGL 10 Unmodified _SPNQSLRLGL_ 0 0 0 nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8093872070312 2 542.809105 1083.60366 0.51712 0.0002807 -0.15896 -8.6283E-05 0.35816 0.00019441 542.8092109443227 56.35 0.1956 50.373 50.304 50.5 -5.9769 16 10 2 0 0 0 0.022716 1 35988 35988 73.196 31.241 1 13663000 60464 2772 40364 41276 70434 70434 0.06519932737569434 SPNRHRRYP 9 Unmodified _SPNRHRRYP_ 0 0 0 REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.7948608398438 2 591.815587 1181.61662 0.67592 0.00040002 -0.055269 -3.2709E-05 0.62065 0.00036731 592.3178451809847 57.672 0.18071 57.606 57.494 57.675 -0.066036 19 8 3 0 0 0 0.20139 1 31434 31434 10.824 0.75 1 1590500 + 60465 22214 40365 41277 70435 70435 0.033078086403065754 SPNRSFTEM 9 Oxidation (M) _SPNRSFTEM(Oxidation (M))_ SPNRSFTEM(1) SPNRSFTEM(42) 0 0 1 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7404174804688 2 542.740031 1083.46551 1.0214 0.00055434 0.6983 0.000379 1.7197 0.00093333 542.7406040713474 20.471 0.25333 17.778 17.608 17.862 -2.693 19 12 2 0 0 0 0.062454 1 10869 10869 41.956 7.0235 1 1615700 60466 4894 40366 41278 70436 70436 890 -0.07288558573213777 SPNSKVNTL 9 Unmodified _SPNSKVNTL_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.261962890625 2 480.261456 958.50836 -0.23757 -0.00011409 0.090929 4.3669E-05 -0.14664 -7.0425E-05 480.2614451915514 20.577 0.2505 20.577 20.42 20.671 0 53 27 3 0 0 0 0.10247 1 10386 10386 32.786 10.049 1 2306600 60467 1397 40367 41279 70437 70437 0.027445795465382616 SPNSKVNTL 9 Unmodified _SPNSKVNTL_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2605285644531 2 480.261456 958.50836 NaN NaN NaN NaN NaN NaN NaN 20.439 1 20.439 19.939 20.939 0 0 0 0 0.29524 1 10283 10283 25.399 0.72543 1 60468 1397 40367 41279 70438 70438 0.027445795465382616 SPNSKVNTL 9 Unmodified _SPNSKVNTL_ 0 0 0 ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA ENSG00000084754|ENST00000380649|HADHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2621459960938 2 480.261456 958.50836 0.30382 0.00014591 0.1143 5.4894E-05 0.41812 0.00020081 480.2616388824076 22.917 0.31399 20.139 19.973 20.287 -2.7784 38 20 2 0 0 0 0.0091809 2 12402 12285;12402 84.522 25.125 1 8828200 60469 1397 40367 41279 70439;70440 70440 0.027445795465382616 SPNSQALIL 9 Unmodified _SPNSQALIL_ 0 0 0 nc|ENSG00000183137|Q8IYX8-2|CEP57L1;ENSG00000183137|ENST00000517392|CEP57L1 nc|ENSG00000183137|Q8IYX8-2|CEP57L1 nc|ENSG00000183137|Q8IYX8-2|CEP57L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7656555175781 2 471.766374 941.518196 0.33132 0.0001563 0.5726 0.00027013 0.90391 0.00042644 471.76628455989817 58.833 0.31125 58.833 58.654 58.965 0 23 13 2 0 0 0 0.011968 1 32756 32756 74.929 22.661 1 1997400 60470 9121 40368 41280 70441 70441 0.04509767551905952 SPNSYVVIM 9 Oxidation (M) _SPNSYVVIM(Oxidation (M))_ SPNSYVVIM(1) SPNSYVVIM(63) 0 0 1 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2520141601562 2 513.252243 1024.48993 0.32223 0.00016538 -2.1583 -0.0011078 -1.8361 -0.00094237 513.2516924335782 46.752 0.2938 46.752 46.585 46.879 0 34 13 3 0 0 0 0.020973 1 25530 25530 62.573 26.446 1 10765000 60471 10934 40369 41281 70442 70442 1742 -0.021332984196760663 SPNSYVVIM 9 Oxidation (M) _SPNSYVVIM(Oxidation (M))_ SPNSYVVIM(1) SPNSYVVIM(63) 0 0 1 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2527465820312 2 513.252243 1024.48993 0.57366 0.00029443 -1.0156 -0.00052123 -0.44189 -0.0002268 513.2518067215243 47.128 0.2151 46.791 46.661 46.876 -0.33664 18 10 2 0 0 0 0.020973 1 25235 25235 62.573 35.689 1 2230400 60472 10934 40369 41281 70443 70443 1742 -0.021332984196760663 SPPAAHKH 8 Unmodified _SPPAAHKH_ 0 0 0 ENST00000541444.5_1_12:1902823-1906819:-|nuORF ENST00000541444.5_1_12:1902823-1906819:-|nuORF ENST00000541444.5_1_12:1902823-1906819:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.561279296875 2 422.724844 843.435135 0.69263 0.00029279 2.0511 0.00086706 2.7438 0.0011599 422.7253226835944 57.031 0.49939 56.965 56.641 57.14 -0.066338 42 24 3 0 0 0 8.7369 1 30888 30888 11.64 5.2862 1 8314000 60473 15047 40370 41282 70444 70444 0.007154956145541291 SPPAPVMH 8 Unmodified _SPPAPVMH_ 0 0 0 ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF ENSG00000100603|ENST00000261531|SNW1 ENSG00000100603|ENST00000261531|SNW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2105712890625 2 418.210181 834.405809 -0.55544 -0.00023229 -1.8445 -0.0007714 -2.4 -0.0010037 418.2090550120691 18.015 0.23577 18.029 17.927 18.163 0.013865 61 41 2 0 0 0 0.80624 1 9001 9001 2.8892 0.31174 1 1646900 60474 1852 40371 41283 70445 70445 -0.018017847259329756 SPPEWIRYHRY 11 Unmodified _SPPEWIRYHRY_ 0 0 0 ENSG00000198355|ENST00000360612|PIM3;ENST00000479509.1_1_6:37140348-37141864:+|nuORF;ENSG00000137193|ENST00000373509|PIM1;nc|ENSG00000137193|P11309-2|PIM1 ENSG00000198355|ENST00000360612|PIM3 ENSG00000198355|ENST00000360612|PIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 752.378662109375 2 752.378217 1502.74188 0.24015 0.00018068 -0.19954 -0.00015013 0.040612 3.0556E-05 752.3783564047096 71.157 0.20512 70.679 70.611 70.816 -0.47736 16 8 2 0 0 0 0.69838 1 38959 38959 8.7454 7.4159 1 1246200 60475 10080 40372 41284 70446 70446 0.010620559860399226 SPPHLPPY 8 Unmodified _SPPHLPPY_ 0 0 0 nc|ENSG00000125355|Q5JRV8-4|TMEM255A;ENSG00000125355|ENST00000371369|TMEM255A;nc|ENSG00000125355|Q5JRV8|TMEM255A;nc|ENSG00000125355|Q5JRV8-2|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A nc|ENSG00000125355|Q5JRV8-4|TMEM255A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2375793457031 2 454.237253 906.459953 NaN NaN NaN NaN NaN NaN NaN 21.15 1 21.15 20.65 21.65 0 0 0 0 0.97444 1 10683 10683 2.8892 0 1 60476 3842 40373 41285 70447 70447 0.002981306972742459 SPPHPPLG 8 Unmodified _SPPHPPLG_ 0 0 0 ENST00000359651.7_1_1:201984548-201984671:+|nuORF ENST00000359651.7_1_1:201984548-201984671:+|nuORF ENST00000359651.7_1_1:201984548-201984671:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2091064453125 2 401.216321 800.418088 NaN NaN NaN NaN NaN NaN NaN 103.35 1 103.25 102.75 103.75 -0.10458 0 0 0 0.97444 1 56372 56372 0.79363 0 1 60477 12149 40374 41286 70448 70448 0.009895750087594024 SPPIIVGEEY 10 Unmodified _SPPIIVGEEY_ 0 0 0 nc|ENSG00000155100|Q8N6M0-2|OTUD6B;ENSG00000155100|ENST00000404789|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B nc|ENSG00000155100|Q8N6M0-2|OTUD6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.285888671875 2 552.284597 1102.55464 0.83416 0.00046069 0.39119 0.00021605 1.2254 0.00067674 552.2846185117457 66.137 0.32964 59.962 59.787 60.117 -6.1757 50 18 4 0 0 0 0.40136 1 43002 43002 21.537 0.66577 1 20409000 60478 6371 40375 41287 70449 70449 0.007465996579639977 SPPIVCLPSCV 11 Unmodified _SPPIVCLPSCV_ 0 0 0 REV__ENSG00000116183|ENST00000367662|PAPPA2 REV__ENSG00000116183|ENST00000367662|PAPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.1926574707031 3 372.192689 1113.55624 0.57966 0.00021574 2.0685 0.0007699 2.6482 0.00098564 372.1934346265155 40.711 0.36738 40.408 40.234 40.601 -0.30304 35 17 3 0 0 0 0.65846 1 21533 21533 6.6235 1.9075 1 4509400 + 60479 19029 40376 41288 70450 70450 0.0040019415071128606 SPPKALAL 8 Unmodified _SPPKALAL_ 0 0 0 REV__nc|ENSG00000068308|Q96G74-4|OTUD5 REV__nc|ENSG00000068308|Q96G74-4|OTUD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.7499084472656 2 398.749996 795.485439 0.2442 9.7376E-05 -0.010228 -4.0785E-06 0.23397 9.3297E-05 398.7500091392097 53.011 0.36768 53.011 52.798 53.166 0 29 17 2 0 0 0 0.80992 1 29359 29359 0.69038 0 1 4552300 + 60480 17434 40377 41289 70451 70451 0.07951605219693647 SPPKKHRR 8 Unmodified _SPPKKHRR_ 0 0 0 REV__ENSG00000166343|ENST00000299432|MSS51 REV__ENSG00000166343|ENST00000299432|MSS51 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.7831115722656 2 503.306867 1004.59918 0.81962 0.00041252 -1.7579 -0.00088475 -0.93825 -0.00047223 503.8072792982562 66.2 0.16433 60.024 59.952 60.117 -6.1757 13 9 2 0 0 0 8.7369 1 43011 43011 8.5933 6.0158 1 7850800 + 60481 22108 40378 41290 70452 70452 0.09706513105322756 SPPKLILE 8 Unmodified _SPPKLILE_ 0 0 0 REV__ENSG00000104435|ENST00000220876|STMN2 REV__ENSG00000104435|ENST00000220876|STMN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.7780151367188 2 448.776211 895.537869 NaN NaN NaN NaN NaN NaN NaN 75.97 1 75.97 75.47 76.47 0 0 0 0 0.97444 1 42248 42248 0.79363 0 1 + 60482 18358 40379 41291 70453 70453 0.08592143562680121 SPPKSLPG 8 Unmodified _SPPKSLPG_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.7249145507812 2 391.723978 781.433404 1.5595 0.0006109 3.7633 0.0014742 5.3228 0.0020851 391.724869878023 94.335 0.17456 88.159 88.03 88.204 -6.1757 14 9 2 0 0 0 0.76266 1 62488 62488 11.64 3.047 1 3824600 60483 6585 40380 41292 70454 70454 0.033944418059604686 SPPLIKHG 8 Unmodified _SPPLIKHG_ 0 0 0 ENSG00000143278|ENST00000367412|F13B ENSG00000143278|ENST00000367412|F13B ENSG00000143278|ENST00000367412|F13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7554931640625 2 424.75307 847.491587 -0.58393 -0.00024803 1.0477 0.00044503 0.46381 0.00019701 424.7535115623487 30.71 0.55048 30.71 30.402 30.953 0 41 26 2 0 0 0 0.80992 1 15906 15906 0.69038 0 1 1929900 60484 5485 40381 41293 70455 70455 0.06174123451239666 SPPLLYRCR 9 Unmodified _SPPLLYRCR_ 0 0 0 REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF REV__ENST00000471162.5_1_3:49044864-49051550:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2848510742188 2 552.802768 1103.59098 0.49621 0.0002743 0.82353 0.00045525 1.3197 0.00072955 552.8035969188795 58.399 0.26973 58.399 58.29 58.56 0 15 10 2 0 0 0 0.17275 1 32494 32494 15.847 1.0089 1 1241900 + 60485 23032 40382 41294 70456 70456 0.0433319807366388 SPPLPPPVE 9 Unmodified _SPPLPPPVE_ 0 0 0 ENST00000337014.10_2_17:80398960-80400257:+|nuORF ENST00000337014.10_2_17:80398960-80400257:+|nuORF ENST00000337014.10_2_17:80398960-80400257:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7589721679688 2 466.758018 931.501483 0.56786 0.00026505 0.91616 0.00042762 1.484 0.00069267 466.75862408042485 39.636 1.984 35.185 34.028 36.012 -4.4509 240 137 3 0 0 0 0.03568 9 24095 22741;22876;23141;23280;23410;23552;23687;23822;24095 52.268 5.8843 1 56942000 60486 11919 40383 41295 70457;70458;70459;70460;70461;70462;70463;70464;70465 70465 0.032992666659424685 SPPLPPPVE 9 Unmodified _SPPLPPPVE_ 0 0 0 ENST00000337014.10_2_17:80398960-80400257:+|nuORF ENST00000337014.10_2_17:80398960-80400257:+|nuORF ENST00000337014.10_2_17:80398960-80400257:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 466.758018 931.501483 0.0050449 2.3548E-06 1.8479 0.00086252 1.8529 0.00086488 466.758958245365 34.879 2.6848 34.906 33.836 36.52 0.027401 -0.13968 0.00039158 NaN 52.268 279 125 3 NaN NaN NaN NaN 0 NaN NaN 0 11901000 60487 11919 40383 41295 0.032992666659424685 SPPLRPHTF 9 Unmodified _SPPLRPHTF_ 0 0 0 ENST00000475482.5_1_2:9563833-9563953:+|nuORF ENST00000475482.5_1_2:9563833-9563953:+|nuORF ENST00000475482.5_1_2:9563833-9563953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.5284118652344 3 351.194298 1050.56106 -0.0055296 -1.942E-06 0.96751 0.00033978 0.96198 0.00033784 351.1947885085823 38.065 0.30728 37.794 37.638 37.946 -0.27133 35 14 3 0 0 0 0.51218 1 20022 20022 7.1017 0.37856 1 5515800 60488 13963 40384 41296 70466 70466 0.03780582399986088 SPPLRRRAE 9 Unmodified _SPPLRRRAE_ 0 0 0 REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF REV__ENST00000426250.3_1_12:72665645-72666709:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 361.2135314941406 3 361.212351 1080.61522 NaN NaN NaN NaN NaN NaN NaN 81.089 1 74.913 74.413 75.413 -6.1757 0 0 0 0.54558 1 53212 53212 14.405 0.18721 1 + 60489 26905 40385 41297 70467 70467 0.07814174551549513 SPPPPHLF 8 Unmodified _SPPPPHLF_ 0 0 0 REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 446.2391967773438 2 446.239796 890.465038 -0.075099 -3.3512E-05 -0.3709 -0.00016551 -0.446 -0.00019902 446.23946565481265 38.999 0.31608 38.712 38.52 38.836 -0.28687 35 13 3 0 0 0 0.2655 1 20542 20542 59.795 10.126 1 13825000 + 60490 24875 40386 41298 70468 70468 0.015424345598944456 SPPPPHLF 8 Unmodified _SPPPPHLF_ 0 0 0 REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.1693725585938 2 446.239796 890.465038 0.49857 0.00022248 -1.4327 -0.00063931 -0.93409 -0.00041683 446.23901659545584 38.558 0.32977 38.575 38.393 38.723 0.016483 37 15 3 0 0 0 8.7369 1 20499 20499 34.187 6.0141 1 19800000 + 60491 24875 40386 41298 70469 70469 0.015424345598944456 SPPPPHLF 8 Unmodified _SPPPPHLF_ 0 0 0 REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2396850585938 2 446.239796 890.465038 1.0753 0.00047983 -0.6746 -0.00030104 0.40067 0.0001788 446.239366267632 42.416 0.47804 37.731 37.531 38.009 -4.6846 81 31 3 0 0 0 0.2655 2 25525 25525;25655 59.795 10.126 1 104120000 + 60492 24875 40386 41298 70470;70471 70470 0.015424345598944456 SPPPPHLF 8 Unmodified _SPPPPHLF_ 0 0 0 REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 446.2694702148438 2 446.239796 890.465038 1.0753 0.00047983 -0.6746 -0.00030104 0.40067 0.0001788 446.239366267632 42.416 0.47804 37.731 37.531 38.009 -4.6846 81 31 3 0 0 0 8.7369 1 25819 25819 14.582 1.0738 1 104120000 + 60493 24875 40386 41298 70472 70472 0.015424345598944456 SPPPPHLF 8 Unmodified _SPPPPHLF_ 0 0 0 REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 446.239796 890.465038 -0.075099 -3.3512E-05 -0.3709 -0.00016551 -0.446 -0.00019902 446.23946565481265 38.999 0.31608 38.712 38.52 38.836 -0.28687 0.068608 0.00058934 NaN 59.795 35 13 3 NaN NaN NaN NaN 0 NaN NaN 0 13825000 + 60494 24875 40386 41298 0.015424345598944456 SPPPTPRKF 9 Unmodified _SPPPTPRKF_ 0 0 0 REV__ENSG00000108091|ENST00000263102|CCDC6 REV__ENSG00000108091|ENST00000263102|CCDC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.790283203125 2 513.790184 1025.56581 0.3906 0.00020068 1.1133 0.000572 1.5039 0.00077268 513.7907088130112 39.203 0.24413 39.203 39.077 39.321 0 28 11 3 0 0 0 0.52067 1 20954 20954 6.2058 0.47393 1 3063900 + 60495 18595 40387 41299 70473 70473 0.05405466542742943 SPPPVLGSSL 10 Unmodified _SPPPVLGSSL_ 0 0 0 ENST00000415890.1_1_6:37786440-37786944:-|nuORF ENST00000415890.1_1_6:37786440-37786944:-|nuORF ENST00000415890.1_1_6:37786440-37786944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2691650390625 2 477.26875 952.522947 0.49676 0.00023709 0.65826 0.00031417 1.155 0.00055125 477.2689434152391 49.06 0.25843 48.688 48.519 48.778 -0.37172 22 12 2 0 0 0 0.24625 1 26371 26371 30.637 2.1497 1 3234700 60496 13028 40388 41300 70474 70474 0.04478651694671498 SPPPVSSS 8 Unmodified _SPPPVSSS_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A REV__ENST00000482116.1_1_13:76423246-76430812:+|nuORF;nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1914672851562 2 379.189968 756.365384 NaN NaN NaN NaN NaN NaN NaN 78.071 1 78.071 77.571 78.571 0 0 0 0 0.97444 1 43394 43394 2.5775 0 1 60497 7924;20142 40389 41301 70475 70475 -0.02254427844707152 SPPPVSSS 8 Unmodified _SPPPVSSS_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A REV__ENST00000482116.1_1_13:76423246-76430812:+|nuORF;nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1919250488281 2 379.189968 756.365384 NaN NaN NaN NaN NaN NaN NaN 78.358 1 78.358 77.858 78.858 0 0 0 0 0.97444 1 43546 43546 2.5775 0 1 60498 7924;20142 40389 41301 70476 70476 -0.02254427844707152 SPPQWEKRHF 10 Unmodified _SPPQWEKRHF_ 0 0 0 ENST00000378814.9_1_6:17760825-17760951:-|nuORF ENST00000378814.9_1_6:17760825-17760951:-|nuORF ENST00000378814.9_1_6:17760825-17760951:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.8922424316406 3 437.891278 1310.652 0.29252 0.00012809 -0.059557 -2.6079E-05 0.23296 0.00010201 437.8913019655083 14.532 0.08676 12.029 11.97 12.057 -2.5029 26 15 2 0 0 0 0.56348 1 7381 7381 7.9454 1.3219 1 3059800 60499 12552 40390 41302 70477 70477 0.009104263774588617 SPPRPPMQ 8 Oxidation (M) _SPPRPPM(Oxidation (M))Q_ SPPRPPM(1)Q SPPRPPM(51)Q 0 0 1 REV__nc|ENSG00000117713|O14497-3|ARID1A REV__nc|ENSG00000117713|O14497-3|ARID1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.23193359375 2 463.231645 924.448736 NaN NaN NaN NaN NaN NaN NaN 38.289 1 38.289 37.789 38.789 0 0 0 0 0.4236 1 20440 20440 50.855 10.406 1 + 60500 16730 40391 41303 70478 70478 1825 -0.016510146684936444 SPPRPPMQ 8 Oxidation (M) _SPPRPPM(Oxidation (M))Q_ SPPRPPM(1)Q SPPRPPM(51)Q 0 0 1 REV__nc|ENSG00000117713|O14497-3|ARID1A REV__nc|ENSG00000117713|O14497-3|ARID1A MSMS AL20221201_MKP_PDAC_01 4 463.2333984375 2 463.231645 924.448736 NaN NaN NaN NaN NaN NaN NaN 43.318 1 38.553 38.053 39.053 -4.7648 0 0 0 0.4236 1 26297 26297 50.855 14.811 1 + 60501 16730 40391 41303 70479 70479 1825 -0.016510146684936444 SPPRSGTVMV 10 Unmodified _SPPRSGTVMV_ 0 0 0 ENSG00000081818|ENST00000194152|PCDHB4 ENSG00000081818|ENST00000194152|PCDHB4 ENSG00000081818|ENST00000194152|PCDHB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7723999023438 2 515.771134 1029.52771 1.3423 0.00069231 0.64917 0.00033482 1.9915 0.0010271 515.7715455107027 33.787 0.50993 29.802 29.572 30.082 -3.9853 83 27 4 0 0 0 0.47869 1 19457 19457 17.443 1.2935 1 22090000 60502 1332 40392 41304 70480 70480 0.014132125657852157 SPPSNRYAGDW 11 Unmodified _SPPSNRYAGDW_ 0 0 0 nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 nc|ENSG00000105137|Q6ZW31-2|SYDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.2830810546875 2 625.283451 1248.55235 1.2922 0.000808 -0.82623 -0.00051663 0.46598 0.00029137 625.2830110540702 71.18 0.34064 71.219 71.024 71.365 0.039024 45 14 4 0 0 0 0.56638 1 39155 39155 13.042 2.9685 1 5571200 60503 2280 40393 41305 70481 70481 -0.06198436027148091 SPPSSSGPLSY 11 Unmodified _SPPSSSGPLSY_ 0 0 0 REV__nc|ENSG00000142606|Q495T6-2|MMEL1 REV__nc|ENSG00000142606|Q495T6-2|MMEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.75830078125 2 539.756204 1077.49785 -0.30686 -0.00016563 0.013539 7.3077E-06 -0.29332 -0.00015832 539.7561740513046 19.445 0.25879 19.445 19.299 19.558 0 65 24 3 0 0 0 0.6889 1 9674 9674 5.2969 0.96765 1 5229400 + 60504 29671 40394 41306 70482 70482 -0.037794478985460955 SPPTLTPF 8 Unmodified _SPPTLTPF_ 0 0 0 REV__ENST00000379619.5_1_2:28635833-28636109:+|nuORF REV__ENST00000379619.5_1_2:28635833-28636109:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2315673828125 2 430.231636 858.448719 0.20051 8.6264E-05 0.26171 0.0001126 0.46222 0.00019886 430.2316674432771 85.213 0.57495 79.037 78.803 79.378 -6.1757 57 35 2 0 0 0 0.5953 1 56305 56305 26.341 1.6674 1 28540000 + 60505 26294 40395 41307 70483 70483 0.013833086031468156 SPPTPIRSVL 10 Unmodified _SPPTPIRSVL_ 0 0 0 ENST00000492431.1_1_1:109822777-109824720:-|nuORF;ENSG00000134222|ENST00000369909|PSRC1;nc|ENSG00000134222|Q6PGN9-4|PSRC1 ENST00000492431.1_1_1:109822777-109824720:-|nuORF ENST00000492431.1_1_1:109822777-109824720:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8159790039062 2 533.816399 1065.61824 1.1843 0.00063219 -3.2687 -0.0017449 -2.0844 -0.0011127 533.8159016077063 49.899 0.32352 49.851 49.743 50.066 -0.048828 27 15 3 0 0 0 0.1899 1 26979 26979 34.932 8.6639 1 2242400 60506 4571 40396 41308 70484 70484 0.08806004885695984 SPPTVEKVKP 10 Unmodified _SPPTVEKVKP_ 0 0 0 ENSG00000100565|ENST00000689127|LRRC74A;nc|ENSG00000100565|Q0VAA2|LRRC74A ENSG00000100565|ENST00000689127|LRRC74A ENSG00000100565|ENST00000689127|LRRC74A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2127990722656 3 361.213246 1080.61791 0.88047 0.00031804 0.99749 0.00036031 1.878 0.00067834 361.21320953751774 49.704 0.75637 49.655 49.25 50.006 -0.048824 80 37 3 0 0 0 0.68074 1 26791 26791 5.0475 0 1 7250900 60507 1844 40397 41309 70485 70485 0.08082585165857381 SPPVHMLSSI 10 Unmodified _SPPVHMLSSI_ 0 0 0 REV__ENSG00000143155|ENST00000367833|TIPRL REV__ENSG00000143155|ENST00000367833|TIPRL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.74560546875 2 534.281334 1066.54812 -0.40835 -0.00021817 2.1778 0.0011636 1.7695 0.0009454 534.2828458916833 34.404 0.27145 34.404 34.247 34.518 0 21 13 2 0 0 0 0.22149 1 18165 18165 14.838 0 1 1574600 + 60508 20608 40398 41310 70486 70486 0.017503832255897578 SPPVLSHEF 9 Unmodified _SPPVLSHEF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;ENST00000521049.5_1_8:71510241-71520545:-|nuORF ENSG00000067167|ENST00000262213|TRAM1;ENST00000521049.5_1_8:71510241-71520545:-|nuORF ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7583923339844 2 506.758549 1011.50255 0.38421 0.0001947 -0.17907 -9.0743E-05 0.20514 0.00010396 506.75841664441975 45.661 0.17698 45.661 45.527 45.704 0 15 8 2 0 0 0 0.031062 1 24875 24875 54.774 29.374 1 3734800 60509 950;14739 40399 41311 70487 70487 -0.002745189651477631 SPPYIKDSPL 10 Unmodified _SPPYIKDSPL_ 0 0 0 REV__ENST00000524655.5_1_11:128842326-128843235:-|nuORF REV__ENST00000524655.5_1_11:128842326-128843235:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8091430664062 2 558.800414 1115.58628 1.1704 0.00065403 0.89962 0.00050271 2.07 0.0011567 558.8003545162549 79.888 0.66613 79.399 79.141 79.807 -0.48933 77 27 4 0 0 0 0.69064 1 43875 43875 3.9444 0.3479 1 9679100 + 60510 20024 40400 41312 70488 70488 0.033105924118899566 SPPYPQSRK 9 Unmodified _SPPYPQSRK_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.8703002929688 3 353.857574 1058.55089 1.3474 0.00047678 0.19355 6.8488E-05 1.5409 0.00054527 353.85776735582607 22.412 0.67883 19.634 19.059 19.738 -2.7784 49 37 2 0 0 0 0.18118 1 11983 11983 18.373 0.93045 1 4498200 60511 2760 40401 41313 70489 70489 0.023959746747550525 SPPYSYETL 9 Unmodified _SPPYSYETL_ 0 0 0 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7479858398438 2 528.747847 1055.48114 0.80987 0.00042822 -0.18105 -9.5732E-05 0.62882 0.00033248 528.7478575404094 73.378 0.58759 73.378 73.126 73.713 0 79 29 4 0 0 0 0.095405 1 40862 40862 34.102 5.6156 1 11885000 + 60512 23614 40402 41314 70490 70490 -0.04437948784516266 SPQAKQWFSMY 11 Unmodified _SPQAKQWFSMY_ 0 0 0 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.8207397460938 2 686.821355 1371.62816 -0.064167 -4.4071E-05 0.42875 0.00029448 0.36458 0.0002504 686.8214533283582 37.425 0.12478 37.425 37.35 37.475 0 10 6 2 0 0 0 0.6889 1 19927 19927 5.2969 0.76802 1 3378500 60513 4639 40403 41315 70491 70491 -0.0427917517122296 SPQDFGLVL 9 Unmodified _SPQDFGLVL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.0271606445312 1 975.514573 974.507297 0.1353 0.00013199 -0.35154 -0.00034293 -0.21624 -0.00021095 975.515611035731 81.42 0.22852 81.42 81.347 81.576 0 11 9 2 0 0 0 0.21858 1 45257 45257 1.4819 0 1 330550 60514 4372 40404 41316 70492 70492 0.01902365177613774 SPQDFGLVL 9 Unmodified _SPQDFGLVL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2619323730469 2 488.260925 974.507297 0.82988 0.0004052 0.36285 0.00017716 1.1927 0.00058236 488.2611032693743 81.945 0.41928 81.449 81.21 81.629 -0.4952 43 15 4 0 0 0 0.14 1 44823 44823 29.082 0 1 3596500 60515 4372 40404 41316 70493 70493 0.01902365177613774 SPQDFGLVL 9 Unmodified _SPQDFGLVL_ 0 0 0 nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 nc|ENSG00000132128|Q15345-3|LRRC41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.5170288085938 1 975.514573 974.507297 0.58298 0.00056871 2.6046 0.0025408 3.1875 0.0031095 975.516537925957 81.998 0.21471 81.503 81.313 81.528 -0.4952 11 7 2 0 0 0 0.094149 1 44861 44861 34.402 1.616 1 551190 60516 4372 40404 41316 70494 70494 0.01902365177613774 SPQDFINLF 9 Unmodified _SPQDFINLF_ 0 0 0 ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32;ENST00000524000.5_1_8:124515615-124518835:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32 ENST00000287396.2_1_8:124515615-124544254:-|nuORF ENST00000287396.2_1_8:124515615-124544254:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7705078125 2 540.771657 1079.52876 0.59344 0.00032092 0.66054 0.0003572 1.254 0.00067812 540.7718711463816 81.396 0.46632 80.903 80.7 81.166 -0.49247 63 20 4 0 0 0 0.1773 2 44498 44498;44595 25.399 11.493 1 7334100 60517 6481 40405 41317 70495;70496 70495 -0.007822497936786021 SPQDKRTLL 9 Unmodified _SPQDKRTLL_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.2050476074219 3 353.204862 1056.59276 -0.36359 -0.00012842 0.80484 0.00028427 0.44125 0.00015585 353.20516515985975 24.44 0.27908 24.44 24.293 24.572 0 39 14 4 0 0 0 0.30202 1 12450 12450 16.566 2.951 1 5670600 60518 3597 40406 41318 70497 70497 0.06672530363289297 SPQDKRTLL 9 Unmodified _SPQDKRTLL_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2052612304688 3 353.204862 1056.59276 1.2484 0.00044095 -0.014786 -5.2224E-06 1.2336 0.00043572 353.2048655964656 26.758 0.39859 23.721 23.475 23.873 -3.0365 48 20 3 0 0 0 0.11784 2 14796 14683;14796 35.612 11.811 1 32746000 60519 3597 40406 41318 70498;70499 70499 0.06672530363289297 SPQDKRTLL 9 Unmodified _SPQDKRTLL_ 0 0 0 ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 ENSG00000121749|ENST00000485960|TBC1D15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3042602539062 2 529.303655 1056.59276 0.56215 0.00029755 -0.45827 -0.00024256 0.10388 5.4985E-05 529.3034638238489 26.735 0.26556 23.698 23.57 23.836 -3.0365 22 13 2 0 0 0 0.026499 1 14721 14721 57.249 22.847 1 7365200 60520 3597 40406 41318 70500 70500 0.06672530363289297 SPQDLRLFY 9 Unmodified _SPQDLRLFY_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7988891601562 2 569.798206 1137.58186 0.8082 0.00046051 0.7477 0.00042604 1.5559 0.00088655 569.798439475196 64.402 0.40588 63.917 63.675 64.081 -0.48512 41 18 3 0 0 0 0.022653 2 35110 35110;35216 57.249 36.835 1 5243300 60521 8661 40407 41319 70501;70502 70501 0.01857127988978391 SPQDLRLFY 9 Unmodified _SPQDLRLFY_ 0 0 0 ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 ENSG00000177169|ENST00000321867|ULK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7981567382812 2 569.798206 1137.58186 1.0678 0.00060844 -0.014532 -8.2801E-06 1.0533 0.00060016 569.7978139567348 63.992 0.25185 63.981 63.825 64.077 -0.010532 25 12 3 0 0 0 0.0090383 1 35009 35009 83.429 83.429 1 5379600 60522 8661 40407 41319 70503 70503 0.01857127988978391 SPQDLRRRL 9 Unmodified _SPQDLRRRL_ 0 0 0 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH;ENST00000483727.5_1_20:33033173-33065666:+|nuORF nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8916320800781 3 380.891389 1139.65234 0.69785 0.0002658 0.4838 0.00018427 1.1816 0.00045008 380.89130978564685 24.185 0.32721 21.358 21.142 21.469 -2.8273 39 17 3 0 0 0 0.069655 2 13178 13068;13178 40.239 19.658 1 12920000 60523 1253 40408 41320 70504;70505 70505 0.08809846097301488 SPQDQPPVM 9 Oxidation (M) _SPQDQPPVM(Oxidation (M))_ SPQDQPPVM(1) SPQDQPPVM(42) 0 0 1 ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF ENSG00000109452|ENST00000262992|INPP4B ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7313232421875 2 507.731674 1013.4488 -0.038532 -1.9564E-05 0.094239 4.7848E-05 0.055707 2.8284E-05 507.7320517664829 22.186 0.37776 22.186 22.005 22.383 0 38 19 3 0 0 0 0.06294 1 11305 11305 41.84 30.199 1 1471900 60524 2649 40409 41321 70506 70506 458 -0.0573905945915385 SPQDSRLYL 9 Unmodified _SPQDSRLYL_ 0 0 0 nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF nc|ENSG00000104946|Q9HA65-3|TBC1D17 nc|ENSG00000104946|Q9HA65-3|TBC1D17 MSMS AL20221201_MKP_PDAC_01 4 539.7801513671875 2 539.780013 1077.54547 NaN NaN NaN NaN NaN NaN NaN 47.998 1 42.764 42.264 43.264 -5.2339 0 0 0 0.090869 1 29854 29854 45.74 5.7826 1 60525 2261 40410 41322 70507 70507 0.009802510922781948 SPQEARNML 9 Oxidation (M) _SPQEARNM(Oxidation (M))L_ SPQEARNM(1)L SPQEARNM(83)L 0 0 1 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2557983398438 2 531.255848 1060.49714 -0.22061 -0.0001172 -0.21458 -0.000114 -0.43519 -0.0002312 531.2558533383642 19.079 0.37397 19.079 18.843 19.217 0 86 28 4 0 0 0 0.0093064 1 9527 9527 83.429 31.799 1 7637600 60526 1991 40411 41323 70508 70508 340 -0.030685658192624032 SPQEARNML 9 Oxidation (M) _SPQEARNM(Oxidation (M))L_ SPQEARNM(1)L SPQEARNM(93)L 0 0 1 nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 nc|ENSG00000101811|P33240-2|CSTF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2566528320312 2 531.255848 1060.49714 1.1445 0.00060803 -0.51454 -0.00027335 0.62998 0.00033468 531.2556830714324 20.744 0.57737 18.051 17.762 18.339 -2.693 90 34 3 0 0 0 0.0081887 3 11161 10947;11052;11161 96.936 33.092 1 15893000 60527 1991 40411 41323 70509;70510;70511 70511 340 -0.030685658192624032 SPQEFIHEL 9 Unmodified _SPQEFIHEL_ 0 0 0 nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 nc|ENSG00000139734|Q9NSV4-7|DIAPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2764282226562 2 550.274564 1098.53457 -0.068841 -3.7881E-05 0.79562 0.00043781 0.72678 0.00039993 550.2754332103592 56.185 0.29498 56.185 56.007 56.301 0 32 13 3 0 0 0 0.011671 1 31299 31299 75.761 35.811 1 8338500 60528 5186 40412 41324 70512 70512 -0.010751512820206699 SPQEFLYN 8 Unmodified _SPQEFLYN_ 0 0 0 REV__ENSG00000215148|ENST00000399677|PRSS41 REV__ENSG00000215148|ENST00000399677|PRSS41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2344360351562 2 499.234907 996.455261 NaN NaN NaN NaN NaN NaN NaN 17.382 1 17.382 16.882 17.882 0 0 0 0 0.97444 1 8559 8559 0.79363 0 1 + 60529 24333 40413 41325 70513 70513 -0.043107982361448194 SPQEKEALY 9 Unmodified _SPQEKEALY_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2579345703125 2 532.766571 1063.51859 -0.2328 -0.00012403 -1.499 -0.00079861 -1.7318 -0.00092264 532.7649755237309 25.818 0.37305 25.818 25.674 26.047 0 30 16 2 0 0 0 0.45045 1 13231 13231 10.074 1.3285 1 2071900 60530 2134 40414 41326 70514 70514 -0.010628575189002731 SPQELQLHY 9 Unmodified _SPQELQLHY_ 0 0 0 nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;nc|ENSG00000180398|Q8NI22-2|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF nc|ENSG00000180398|Q8NI22-3|MCFD2 nc|ENSG00000180398|Q8NI22-3|MCFD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7789916992188 2 557.780013 1113.54547 -0.030354 -1.6931E-05 0.21637 0.00012069 0.18602 0.00010376 557.7800940935365 44.708 0.2564 44.708 44.552 44.808 0 33 13 3 0 0 0 0.00085914 2 24288 24288;24395 140.63 74.176 1 71276000 60531 8899 40415 41327 70515;70516 70515 -0.006757489077017453 SPQELQLHY 9 Unmodified _SPQELQLHY_ 0 0 0 nc|ENSG00000180398|Q8NI22-3|MCFD2;ENSG00000180398|ENST00000319466|MCFD2;nc|ENSG00000180398|Q8NI22-2|MCFD2;ENST00000477791.5_1_2:47134810-47142912:-|nuORF nc|ENSG00000180398|Q8NI22-3|MCFD2 nc|ENSG00000180398|Q8NI22-3|MCFD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.779052734375 2 557.780013 1113.54547 0.07572 4.2235E-05 -1.9014 -0.0010606 -1.8257 -0.0010183 557.7792358840143 44.934 0.18943 44.609 44.51 44.7 -0.32425 12 9 2 0 0 0 0.0087224 1 23987 23987 107.1 34.132 1 13852000 60532 8899 40415 41327 70517 70517 -0.006757489077017453 SPQEMPLRVI 10 Unmodified _SPQEMPLRVI_ 0 0 0 REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3207397460938 2 585.320991 1168.62743 -0.84845 -0.00049662 0.16202 9.4834E-05 -0.68643 -0.00040178 585.3208758168425 56.192 0.29268 55.706 55.531 55.823 -0.48554 42 14 4 0 0 0 0.43662 2 30557 30450;30557 26.268 10.119 1 28345000 + 60533 27625 40416 41328 70518;70519 70519 0.04986030179725276 SPQEMPLRVI 10 Unmodified _SPQEMPLRVI_ 0 0 0 REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8214721679688 2 585.320991 1168.62743 -0.84845 -0.00049662 0.16202 9.4834E-05 -0.68643 -0.00040178 585.3208758168425 56.192 0.29268 55.706 55.531 55.823 -0.48554 42 14 4 0 0 0 0.21618 1 30450 30450 26.268 10.119 1 28345000 + 60534 27625 40416 41328 70520 70520 0.04986030179725276 SPQEMPLRVI 10 Unmodified _SPQEMPLRVI_ 0 0 0 REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.54931640625 3 390.549753 1168.62743 0.47815 0.00018674 -0.51186 -0.00019991 -0.033711 -1.3166E-05 390.54964298719733 47.587 0.20901 47.548 47.411 47.62 -0.038643 22 9 3 0 0 0 0.49559 1 25629 25629 16.566 7.8205 1 5080000 + 60535 27625 40416 41328 70521 70521 0.04986030179725276 SPQEMPLRVI 10 Unmodified _SPQEMPLRVI_ 0 0 0 REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF REV__ENST00000478188.5_1_4:57891702-57896440:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3204345703125 2 585.320991 1168.62743 -0.058274 -3.4109E-05 -0.87965 -0.00051488 -0.93793 -0.00054899 585.3203959754352 55.869 0.42696 55.8 55.497 55.924 -0.068737 50 22 4 0 0 0 0.47059 2 30325 30325;30427 26.268 12.362 1 25581000 + 60536 27625 40416 41328 70522;70523 70522 0.04986030179725276 SPQFMANFH 9 Unmodified _SPQFMANFH_ 0 0 0 REV__ENSG00000115207|ENST00000264720|GTF3C2 REV__ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1636962890625 3 360.16401 1077.4702 0.083157 2.995E-05 -1.1206 -0.00040361 -1.0375 -0.00037366 360.16362162212357 77.531 0.41536 77.531 77.316 77.731 0 100 32 4 0 0 0 0.5029 1 43126 43126 4.5289 0 1 18582000 + 60537 18957 40417 41329 70524 70524 -0.06543629639782012 SPQGIYILI 9 Unmodified _SPQGIYILI_ 0 0 0 ENST00000531840.1_1_11:2415125-2416354:+|nuORF ENST00000531840.1_1_11:2415125-2416354:+|nuORF ENST00000531840.1_1_11:2415125-2416354:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2948608398438 2 502.294768 1002.57498 0.19023 9.5553E-05 0.05813 2.9198E-05 0.24836 0.00012475 502.29465991373377 82.874 0.66277 82.377 82.102 82.764 -0.49751 61 27 3 0 0 0 0.03568 3 45378 45282;45378;45479 52.268 0 1 5369100 60538 14916 40418 41330 70525;70526;70527 70526 0.07379815108436105 SPQGLRVRL 9 Unmodified _SPQGLRVRL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3134155273438 2 513.314358 1024.61416 -0.020051 -1.0293E-05 0.68962 0.00035399 0.66957 0.0003437 513.3147397878798 36.828 0.23624 36.85 36.706 36.942 0.021545 29 10 3 0 0 0 0.34999 1 19481 19481 14.838 0 1 5005800 60539 4412 40419 41331 70528 70528 0.10283960182664487 SPQGLRVRL 9 Unmodified _SPQGLRVRL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3138427734375 2 513.314358 1024.61416 0.30194 0.00015499 0.21636 0.00011106 0.51831 0.00026606 513.3143386317574 40.346 0.35097 35.816 35.62 35.971 -4.5294 45 25 2 0 0 0 0.028475 2 24034 24034;24161 56.177 18.203 1 23091000 60540 4412 40419 41331 70529;70530 70529 0.10283960182664487 SPQGLRVRL 9 Unmodified _SPQGLRVRL_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 513.314358 1024.61416 -0.020051 -1.0293E-05 0.68962 0.00035399 0.66957 0.0003437 513.3147397878798 36.828 0.23624 36.85 36.706 36.942 0.021545 0 0 NaN 14.838 29 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5005800 60541 4412 40419 41331 0.10283960182664487 SPQGRIHQIEY 11 Unmodified _SPQGRIHQIEY_ 0 0 0 ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF;ENST00000533331.5_1_11:14535061-14541920:-|nuORF;ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 ENST00000526443.5_1_11:14535901-14541492:-|nuORF ENST00000526443.5_1_11:14535901-14541492:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2302856445312 3 443.229959 1326.66805 -0.53467 -0.00023698 1.3191 0.00058469 0.78448 0.0003477 443.23047412244426 28.196 0.21746 28.196 28.074 28.292 0 34 10 5 0 0 0 0.49156 1 14547 14547 16.838 11.436 1 9203900 60542 4114 40420 41332 70531 70531 0.017780878237090292 SPQGRIHQIEY 11 Unmodified _SPQGRIHQIEY_ 0 0 0 ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF;ENST00000533331.5_1_11:14535061-14541920:-|nuORF;ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 ENST00000526443.5_1_11:14535901-14541492:-|nuORF ENST00000526443.5_1_11:14535901-14541492:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2295837402344 3 443.229959 1326.66805 0.50672 0.00022459 -0.10707 -4.7455E-05 0.39965 0.00017714 443.22961131148196 28.117 0.15675 28.07 27.956 28.113 -0.04641 11 5 3 0 0 0 0.56863 1 14504 14504 12.929 8.2128 1 4255100 60543 4114 40420 41332 70532 70532 0.017780878237090292 SPQGRIHQIEY 11 Unmodified _SPQGRIHQIEY_ 0 0 0 ENST00000526443.5_1_11:14535901-14541492:-|nuORF;ENST00000528307.5_1_11:14535901-14541893:-|nuORF;ENST00000533331.5_1_11:14535061-14541920:-|nuORF;ENSG00000129084|ENST00000396394|PSMA1;nc|ENSG00000129084|P25786-2|PSMA1 ENST00000526443.5_1_11:14535901-14541492:-|nuORF ENST00000526443.5_1_11:14535901-14541492:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.2310485839844 3 443.229959 1326.66805 NaN NaN NaN NaN NaN NaN NaN 31.385 1 27.69 27.19 28.19 -3.6958 0 0 0 0.21962 1 17768 17768 38.161 25.305 1 60544 4114 40420 41332 70533 70533 0.017780878237090292 SPQGRVMTI 9 Oxidation (M) _SPQGRVM(Oxidation (M))TI_ SPQGRVM(1)TI SPQGRVM(94)TI 0 0 1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.763427734375 2 502.763309 1003.51206 0.050026 2.5151E-05 -0.37295 -0.0001875 -0.32292 -0.00016235 502.76322576365106 23.713 0.38537 23.713 23.529 23.915 0 76 19 5 0 0 0 0.0081 2 12133 12036;12133 93.938 29.702 1 10092000 60545 7884 40421 41333 70534;70535 70535 1337 0.01044926048734851 SPQGRVMTI 9 Oxidation (M) _SPQGRVM(Oxidation (M))TI_ SPQGRVM(1)TI SPQGRVM(40)TI 0 0 1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7625427246094 2 502.763309 1003.51206 -0.33749 -0.00016968 -0.27949 -0.00014052 -0.61698 -0.0003102 502.76331054561683 23.761 0.20809 23.773 23.691 23.9 0.012394 15 9 2 0 0 0 0.069655 1 12134 12134 40.239 14.84 1 2712000 60546 7884 40421 41333 70536 70536 1337 0.01044926048734851 SPQGRVMTI 9 Oxidation (M) _SPQGRVM(Oxidation (M))TI_ SPQGRVM(1)TI SPQGRVM(85)TI 0 0 1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7635498046875 2 502.763309 1003.51206 0.53424 0.0002686 0.088031 4.4259E-05 0.62227 0.00031285 502.7633885830818 26.543 0.57878 23.592 23.244 23.823 -2.9511 69 30 3 0 0 0 0.0091809 2 14591 14591;14714 84.522 38.501 1 43190000 60547 7884 40421 41333 70537;70538 70537 1337 0.01044926048734851 SPQGRVMTI 9 Unmodified _SPQGRVMTI_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7666015625 2 494.765852 987.51715 NaN NaN NaN NaN NaN NaN NaN 35.317 1 35.094 34.594 35.594 -0.2224 0 0 0 0.43483 1 18489 18489 18.146 3.5647 1 60548 7884 40421 41334 70539 70539 0.022892299113550507 SPQGRVMTI 9 Unmodified _SPQGRVMTI_ 0 0 0 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 ENSG00000169564|ENST00000303577|PCBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7669677734375 2 494.765852 987.51715 0.91735 0.00045387 1.2901 0.00063829 2.2074 0.0010922 494.76652954247885 39.277 0.38428 34.826 34.689 35.073 -4.4509 40 23 2 0 0 0 0.0099157 1 23313 23313 80.676 20.602 1 70047000 60549 7884 40421 41334 70540 70540 0.022892299113550507 SPQHLNVQQ 9 Unmodified _SPQHLNVQQ_ 0 0 0 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 ENSG00000158445|ENST00000371741|KCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8491821289062 3 350.849079 1049.52541 -0.57861 -0.000203 0.54235 0.00019028 -0.036258 -1.2721E-05 350.84931175844986 16.085 0.2168 16.085 15.934 16.15 0 117 46 3 0 0 0 0.41742 1 7832 7832 7.609 1.8255 1 3394700 60550 6585 40422 41335 70541 70541 0.0026250015232562873 SPQKKNHLVL 10 Unmodified _SPQKKNHLVL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.201904296875 3 388.568024 1162.68224 1.5296 0.00059434 -0.43557 -0.00016925 1.094 0.00042509 388.56793166178903 21.004 0.30473 18.311 18.148 18.453 -2.693 35 16 3 0 0 0 0.23002 1 11167 11167 10.151 0 1 5030900 60551 8296;16388 40423 41336 70542 70542 0.10740785042662537 SPQKTMSVL 9 Unmodified _SPQKTMSVL_ 0 0 0 ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000572085.5_1_15:43707600-43785241:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.7718200683594 2 495.76806 989.521567 0.35386 0.00017543 -0.41108 -0.0002038 -0.057221 -2.8368E-05 495.76841425223427 39.862 0.3197 35.333 35.096 35.416 -4.5294 28 20 2 0 0 0 0.07631 1 23615 23615 38.176 11.292 1 18831000 60552 958 40424 41337 70543 70543 0.02638694334268621 SPQLKHSEPK 10 Unmodified _SPQLKHSEPK_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7860717773438 2 575.814387 1149.61422 -0.037989 -2.1875E-05 -0.79775 -0.00045936 -0.83574 -0.00048123 575.8138365056658 29.401 0.14359 29.401 29.308 29.451 0 12 6 2 0 0 0 0.23325 1 15198 15198 10.074 0 1 827220 60553 1357 40425 41338 70544 70544 0.04539915391978866 SPQLRLPF 8 Unmodified _SPQLRLPF_ 0 0 0 REV__ENSG00000151835|ENST00000382292|SACS REV__ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2785949707031 2 479.279452 956.544351 1.321 0.00063311 -2.309 -0.0011067 -0.98807 -0.00047356 479.27818234527575 96.822 0.39218 90.647 90.453 90.845 -6.1757 38 22 2 0 0 0 0.77907 1 64130 64130 10.183 1.5901 1 14138000 + 60554 21093 40426 41339 70545 70545 0.06434081514032641 SPQLTVHQP 9 Unmodified _SPQLTVHQP_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2661743164062 2 503.769448 1005.52434 -0.14436 -7.2724E-05 -3.5192 -0.0017729 -3.6635 -0.0018456 504.2686546366854 63.401 0.54459 62.915 62.583 63.127 -0.48617 55 24 4 0 0 0 0.20358 1 34425 34425 10.074 0 1 1540400 60555 10065 40427 41340 70546 70546 0.021802857834245515 SPQPDGKVVY 10 Unmodified _SPQPDGKVVY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2819213867188 2 545.282389 1088.55022 -0.5847 -0.00031883 0.065128 3.5513E-05 -0.51957 -0.00028331 545.2823610594816 27.963 0.44666 27.963 27.804 28.251 0 71 25 4 0 0 0 0.078742 2 14378 14378;14476 51.415 26.424 1 73887000 60556 8039 40428 41341 70547;70548 70547 0.009491352350551097 SPQPDGKVVY 10 Unmodified _SPQPDGKVVY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MSMS AL20221201_MKP_PDAC_01 4 545.2820434570312 2 545.282389 1088.55022 NaN NaN NaN NaN NaN NaN NaN 31.485 1 27.789 27.289 28.289 -3.6958 0 0 0 0.042083 1 17836 17836 59.368 17.413 1 60557 8039 40428 41341 70549 70549 0.009491352350551097 SPQPDGKVVY 10 Unmodified _SPQPDGKVVY_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MSMS AL20221201_MKP_PDAC_01 4 545.2819213867188 2 545.282389 1088.55022 NaN NaN NaN NaN NaN NaN NaN 31.745 1 28.05 27.55 28.55 -3.6958 0 0 0 0.18903 1 18008 18008 43.982 15.487 1 60558 8039 40428 41341 70550 70550 0.009491352350551097 SPQPLPWTS 9 Unmodified _SPQPLPWTS_ 0 0 0 REV__nc|ENSG00000113494|P16471-2|PRLR REV__nc|ENSG00000113494|P16471-2|PRLR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7554321289062 2 506.758549 1011.50255 NaN NaN NaN NaN NaN NaN NaN 18.58 1 18.586 18.086 19.086 0.0060463 0 0 0 0.7453 1 9421 9421 7.9102 0 1 + 60559 18870 40429 41342 70551 70551 -0.0027451896515913177 SPQPPSFTY 9 Unmodified _SPQPPSFTY_ 0 0 0 nc|ENSG00000159840|Q15942-2|ZYX;ENSG00000159840|ENST00000322764|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF nc|ENSG00000159840|Q15942-2|ZYX MSMS AL20221201_MKP_PDAC_01 4 512.2437744140625 2 512.242732 1022.47091 NaN NaN NaN NaN NaN NaN NaN 58.245 1 52.217 51.717 52.717 -6.0275 0 0 0 0.3031 1 37312 37312 24.991 7.8781 1 60560 6677;13468 40430 41343 70552 70552 -0.03942511719094455 SPQPQRAQL 9 Unmodified _SPQPQRAQL_ 0 0 0 nc|ENSG00000109689|Q9P246-2|STIM2;nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2822875976562 2 512.780348 1023.54614 -0.19393 -9.9441E-05 -0.15041 -7.7126E-05 -0.34433 -0.00017657 512.7803103800114 21.809 0.20088 21.809 21.679 21.88 0 71 33 3 0 0 0 0.34999 2 11003 11003;11105 14.838 0 1 2691400 60561 16113 40431 41344 70553;70554 70553 0.03531090531987502 SPQPQRAQL 9 Unmodified _SPQPQRAQL_ 0 0 0 nc|ENSG00000109689|Q9P246-2|STIM2;nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7801513671875 2 512.780348 1023.54614 0.13833 7.0931E-05 -0.030162 -1.5466E-05 0.10816 5.5464E-05 512.780168300229 24.369 0.36744 21.541 21.356 21.724 -2.8273 42 20 3 0 0 0 0.0059585 1 13229 13229 114.65 40.226 1 10859000 60562 16113 40431 41344 70555 70555 0.03531090531987502 SPQPRLIYL 9 Unmodified _SPQPRLIYL_ 0 0 0 ENSG00000159346|ENST00000340990|ADIPOR1;ENST00000495562.5_1_1:202910703-202913132:-|nuORF ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000159346|ENST00000340990|ADIPOR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7954711914062 2 543.818941 1085.62333 0.27758 0.00015095 0.34327 0.00018668 0.62085 0.00033763 543.8192762324428 61.704 0.41372 61.671 61.456 61.869 -0.032787 41 20 3 0 0 0 0.072954 1 33646 33646 47.594 16.326 1 7911900 60563 6647 40432 41345 70556 70556 0.08394308748324875 SPQPRLIYL 9 Unmodified _SPQPRLIYL_ 0 0 0 ENSG00000159346|ENST00000340990|ADIPOR1;ENST00000495562.5_1_1:202910703-202913132:-|nuORF ENSG00000159346|ENST00000340990|ADIPOR1 ENSG00000159346|ENST00000340990|ADIPOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.81884765625 2 543.818941 1085.62333 0.38285 0.0002082 0.70688 0.00038442 1.0897 0.00059262 543.8190965598509 66.774 0.41612 60.599 60.332 60.748 -6.1757 57 23 3 0 0 0 0.078314 1 43373 43373 38.176 6.9072 1 16373000 60564 6647 40432 41345 70557 70557 0.08394308748324875 SPQPSPQSFP 10 Unmodified _SPQPSPQSFP_ 0 0 0 FAM8A1-CAP2|1|fusion;ENSG00000137414|ENST00000259963|FAM8A1 FAM8A1-CAP2|1|fusion FAM8A1-CAP2|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2575073242188 2 536.258914 1070.50327 NaN NaN NaN NaN NaN NaN NaN 39.158 1 39.158 38.658 39.658 0 0 0 0 0.38764 1 20967 20967 32.037 1.4009 1 60565 4929 40433 41346 70558 70558 -0.029157243160852886 SPQQQSAIY 9 Unmodified _SPQQQSAIY_ 0 0 0 nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700|ATXN2;ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF;nc|ENSG00000204842|Q99700-4|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 nc|ENSG00000204842|Q99700-5|ATXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2511291503906 2 511.251089 1020.48762 -0.26209 -0.00013399 -0.87059 -0.00044509 -1.1327 -0.00057909 511.2506285798406 29.718 0.13372 29.718 29.608 29.742 0 9 6 2 0 0 0 0.34999 1 15408 15408 14.838 1.3304 1 992870 60566 10330 40434 41347 70559 70559 -0.021800108331376578 SPQQVSAQL 9 Unmodified _SPQQVSAQL_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2532958984375 2 479.253631 956.49271 -0.19413 -9.3037E-05 -0.22068 -0.00010576 -0.41481 -0.0001988 479.2535770265886 35.231 0.21353 35.231 35.146 35.36 0 17 10 2 0 0 0 0.023481 1 18629 18629 60.074 17.979 1 3022100 60567 10065 40435 41348 70560 70560 0.012722930294785328 SPQQVSAQL 9 Unmodified _SPQQVSAQL_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2538452148438 2 479.253631 956.49271 1.3923 0.00066727 -0.57121 -0.00027376 0.82111 0.00039352 479.2534301777298 40.958 0.30286 36.35 36.165 36.467 -4.6079 24 18 2 0 0 0 0.085319 1 24522 24522 36.506 10.238 1 11054000 60568 10065 40435 41348 70561 70561 0.012722930294785328 SPQRPRPTL 9 Unmodified _SPQRPRPTL_ 0 0 0 ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2051391601562 3 351.205085 1050.59343 -0.0088503 -3.1083E-06 0.14241 5.0014E-05 0.13356 4.6906E-05 351.2053084231516 19.96 0.19361 19.968 19.872 20.066 0.0078487 28 9 4 0 0 0 0.082934 1 10153 10153 37.075 7.6375 1 5999100 60569 1200 40436 41349 70562 70562 0.07015369803002613 SPQRPRPTL 9 Unmodified _SPQRPRPTL_ 0 0 0 ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2059936523438 3 351.205085 1050.59343 1.5778 0.00055414 0.6679 0.00023457 2.2457 0.00078871 351.2053637046943 22.067 0.34884 19.332 19.14 19.489 -2.7348 47 19 3 0 0 0 0.171 1 11875 11875 26.021 3.3626 1 16081000 60570 1200 40436 41349 70563 70563 0.07015369803002613 SPQRRLLLH 9 Unmodified _SPQRRLLLH_ 0 0 0 REV__ENST00000229239.9_1_12:6643696-6644011:+|nuORF REV__ENST00000229239.9_1_12:6643696-6644011:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3407592773438 2 560.340907 1118.66726 1.1332 0.00063499 -1.1102 -0.00062208 0.02304 1.2911E-05 560.3401273493758 100.5 0.22921 94.323 94.202 94.431 -6.1757 40 14 4 0 0 0 0.58865 1 67178 67178 2.0598 0.40713 1 266060000 + 60571 24803 40437 41350 70564 70564 0.11267337965318802 SPQRRSLVL 9 Unmodified _SPQRRSLVL_ 0 0 0 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1;ENST00000562067.5_1_15:75648249-75648696:-|nuORF;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 nc|ENSG00000140400|Q9NTJ4-3|MAN2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5485229492188 3 352.548852 1054.62473 -0.012454 -4.3907E-06 0.55748 0.00019654 0.54503 0.00019215 352.8834671521048 28.872 0.21163 28.902 28.777 28.988 0.030106 16 8 3 0 0 0 0.07087 1 15040 15040 30.703 9.1133 1 5528900 60572 5232 40438 41351 70565 70565 0.09959942837076596 SPQRSGGWL 9 Unmodified _SPQRSGGWL_ 0 0 0 REV__ENST00000536995.5_1_11:72538171-72539572:+|nuORF REV__ENST00000536995.5_1_11:72538171-72539572:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.251953125 2 494.253966 986.493378 -0.23346 -0.00011539 -1.1378 -0.00056237 -1.3713 -0.00067776 494.2535072160939 44.58 0.38804 44.58 44.342 44.73 0 65 20 4 0 0 0 0.28023 1 24166 24166 18.146 1.2041 1 290320000 + 60573 28544 40439 41352 70566 70566 -0.0004086753079945993 SPQSAAAEL 9 Unmodified _SPQSAAAEL_ 0 0 0 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 ENSG00000054598|ENST00000645831|FOXC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2189331054688 2 437.219257 872.423961 -0.28126 -0.00012297 -1.2516 -0.0005472 -1.5328 -0.00067017 437.21927798562206 33.365 0.25082 33.365 33.183 33.434 0 25 12 3 0 0 0 0.017075 1 17454 17454 66.457 18.111 1 3383500 60574 761 40440 41353 70567 70567 -0.017353712702515622 SPQSLDISF 9 Unmodified _SPQSLDISF_ 0 0 0 ENSG00000120334|ENST00000682279|CENPL;nc|ENSG00000120334|Q8N0S6-2|CENPL ENSG00000120334|ENST00000682279|CENPL ENSG00000120334|ENST00000682279|CENPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2893981933594 2 497.248015 992.481476 0.78498 0.00039033 0.34134 0.00016973 1.1263 0.00056006 497.24827189188517 47.722 0.4216 47.722 47.494 47.916 0 44 19 3 0 0 0 0.19205 1 26073 26073 3.2813 0 1 4744700 60575 3512 40441 41354 70568 70568 -0.015065290646589347 SPQSNSPVL 9 Unmodified _SPQSNSPVL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7405395507812 2 464.740357 927.46616 -0.017738 -8.2434E-06 0.47685 0.00022161 0.45911 0.00021337 464.7407098711183 35.004 0.30801 35.004 34.882 35.19 0 24 15 2 0 0 0 0.14 1 18467 18467 29.082 1.4528 1 2518200 60576 9169 40442 41355 70569 70569 -0.0004739586186133238 SPQSTVTVF 9 Unmodified _SPQSTVTVF_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2508239746094 2 483.250557 964.486562 0.98709 0.00047701 -0.41276 -0.00019947 0.57433 0.00027755 483.25021859901807 59.818 0.54782 53.703 53.452 54 -6.1147 78 30 3 0 0 0 0.07916 1 38349 38349 37.974 11.09 1 140690000 60577 1860 40443 41356 70570 70570 0.0028977479797731576 SPQSTVTVF 9 Unmodified _SPQSTVTVF_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.49462890625 1 965.493838 964.486562 0.78624 0.00075911 -0.57238 -0.00055263 0.21386 0.00020648 965.4928795258421 59.795 0.44973 53.68 53.515 53.964 -6.1147 47 25 2 0 0 0 0.010301 1 38350 38350 79.596 28.181 1 49520000 60578 1860 40443 41356 70571 70571 0.0028977479797731576 SPQYDPIF 8 Unmodified _SPQYDPIF_ 0 0 0 REV__ENSG00000075539|ENST00000358350|FRYL REV__ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7328186035156 2 483.732 965.449448 0.27585 0.00013344 1.96 0.00094809 2.2358 0.0010815 483.73209221629406 79.608 0.31379 79.608 79.372 79.686 0 20 12 2 0 0 0 0.79669 1 44194 44194 8.5933 0.68312 1 385710 + 60579 17572 40444 41357 70572 70572 -0.03465896747809438 SPQYSLQV 8 Unmodified _SPQYSLQV_ 0 0 0 REV__ENSG00000129009|ENST00000249842|ISLR REV__ENSG00000129009|ENST00000249842|ISLR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2377624511719 2 461.23745 920.460347 0.2286 0.00010544 1.6512 0.00076158 1.8798 0.00086702 461.2381904221903 34.567 0.18979 34.594 34.478 34.668 0.027401 15 8 2 0 0 0 0.74163 1 18211 18211 13.508 0 1 1347000 + 60580 19646 40445 41358 70573 70573 -0.0030649437351257802 SPQYSLQV 8 Unmodified _SPQYSLQV_ 0 0 0 REV__ENSG00000129009|ENST00000249842|ISLR REV__ENSG00000129009|ENST00000249842|ISLR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 461.23745 920.460347 0.2286 0.00010544 1.6512 0.00076158 1.8798 0.00086702 461.2381904221903 34.567 0.18979 34.594 34.478 34.668 0.027401 0.0080844 -0.0001923 NaN 13.508 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1347000 + 60581 19646 40445 41358 -0.0030649437351257802 SPRAAAAAL 9 Unmodified _SPRAAAAAL_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN;ENST00000602806.1_1_1:226271519-226271639:+|nuORF nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2398986816406 2 414.240327 826.466101 NaN NaN NaN NaN NaN NaN NaN 21.774 1 21.774 21.274 22.274 0 0 0 0 0.41346 1 11043 11043 19.257 0 1 60582 2301 40446 41359 70574 70574 0.04592648928780818 SPRAIHSWL 9 Unmodified _SPRAIHSWL_ 0 0 0 ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4;ENST00000495288.5_1_1:151372054-151373071:+|nuORF ENST00000474100.1_1_1:151372658-151373852:+|nuORF ENST00000474100.1_1_1:151372658-151373852:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.1986694335938 3 356.197931 1065.57196 1.3404 0.00047746 -1.4532 -0.00051763 -0.11277 -4.0167E-05 356.1970365783235 43.746 0.25832 38.981 38.808 39.066 -4.7648 27 15 2 0 0 0 0.40476 1 26569 26569 12.175 0 1 5534500 60583 6651 40447 41360 70575 70575 0.04179984774282275 SPRALIHGSI 10 Unmodified _SPRALIHGSI_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8740844726562 3 350.873336 1049.59818 1.4325 0.00050264 1.277 0.00044807 2.7096 0.00095071 350.87381600112207 28.605 0.26971 25.457 25.246 25.515 -3.1482 23 13 2 0 0 0 0.65023 1 15964 15964 8.4443 2.6609 1 6253800 60584 2565 40448 41361 70576 70576 0.07536253945750104 SPRALLPRF 9 Unmodified _SPRALLPRF_ 0 0 0 REV__ENST00000537838.5_1_12:7024996-7025840:+|nuORF REV__ENST00000537838.5_1_12:7024996-7025840:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8818054199219 3 352.881943 1055.624 1.322 0.00046652 -0.61981 -0.00021872 0.70223 0.00024781 352.8816846645432 48.111 0.36061 42.877 42.692 43.053 -5.2339 33 21 2 0 0 0 0.10247 1 29921 29921 24.882 6.5085 1 7818900 + 60585 28552 40449 41362 70577 70577 0.09841148188024818 SPRARPKEL 9 Unmodified _SPRARPKEL_ 0 0 0 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8775634765625 3 351.876969 1052.60908 0.8683 0.00030553 0.66711 0.00023474 1.5354 0.00054027 351.8772248061946 14.594 0.16568 12.091 12.01 12.175 -2.5029 94 28 4 0 0 0 0.11005 1 7396 7396 32.037 11.457 1 112160000 60586 8984 40450 41363 70578 70578 0.08487656320039605 SPRARPKEL 9 Unmodified _SPRARPKEL_ 0 0 0 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 ENSG00000181649|ENST00000314222|PHLDA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3117065429688 2 527.311815 1052.60908 0.19622 0.00010347 0.83906 0.00044244 1.0353 0.00054592 527.3123422820731 14.588 0.095606 12.085 12.041 12.137 -2.5029 30 17 2 0 0 0 0.46162 1 7409 7409 2.9952 1.3426 1 5269200 60587 8984 40450 41363 70579 70579 0.08487656320039605 SPRASPRISL 10 Unmodified _SPRASPRISL_ 0 0 0 REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF REV__ENST00000486253.1_1_15:91479504-91483847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3184814453125 2 542.317097 1082.61964 -0.4445 -0.00024106 1.8621 0.0010098 1.4176 0.00076878 542.3180761136082 33.112 0.16474 32.953 32.888 33.052 -0.15918 11 6 2 0 0 0 0.69385 1 17296 17296 6.7232 0 1 801650 + 60588 27796 40451 41364 70580 70580 0.08163638974474452 SPRATRRSPL 10 Unmodified _SPRATRRSPL_ 0 0 0 REV__ENST00000305123.5_1_2:227663009-227664002:-|nuORF REV__ENST00000305123.5_1_2:227663009-227664002:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8896179199219 3 380.891389 1139.65234 NaN NaN NaN NaN NaN NaN NaN 21.556 1 21.57 21.07 22.07 0.013796 0 0 0 0.96756 1 11047 11047 4.1895 0 1 + 60589 25363 40452 41365 70581 70581 0.08809846097324225 SPRAVSTTF 9 Unmodified _SPRAVSTTF_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2559814453125 2 483.256174 964.497795 0.63543 0.00030708 -1.893 -0.00091478 -1.2575 -0.00060771 483.2550579345107 30.572 0.18284 30.47 30.365 30.548 -0.10269 11 6 2 0 0 0 0.21643 1 15885 15885 21.537 1.0834 1 1057900 60590 927 40453 41366 70582 70582 0.014125968920893683 SPRAWSQHL 9 Unmodified _SPRAWSQHL_ 0 0 0 nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35-2|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.1902465820312 3 361.189435 1080.54648 0.14203 5.13E-05 1.1349 0.00040991 1.2769 0.00046121 361.18971151746103 27.879 0.14503 27.908 27.84 27.985 0.029566 10 5 2 0 0 0 0.36964 1 14518 14518 9.544 3.8121 1 2137200 60591 16195 40454 41367 70583 70583 0.009425102518434869 SPRDPVLTL 9 Unmodified _SPRDPVLTL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2880554199219 2 499.287474 996.560395 0.2381 0.00011888 0.57974 0.00028946 0.81785 0.00040834 499.28774442559603 51.795 0.37003 51.795 51.583 51.953 0 46 16 4 0 0 0 0.044296 2 28579 28579;28695 47.594 14.327 1 25646000 60592 8633 40455 41368 70584;70585 70584 0.061977429602734446 SPRDPVLTL 9 Unmodified _SPRDPVLTL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2879333496094 2 499.287474 996.560395 0.39721 0.00019832 0.21152 0.00010561 0.60873 0.00030393 499.2878844074454 52.158 0.34009 51.724 51.531 51.871 -0.43367 37 16 3 0 0 0 0.14594 1 28152 28152 28.495 1.6109 1 4269100 60593 8633 40455 41368 70586 70586 0.061977429602734446 SPRDPVLTL 9 Unmodified _SPRDPVLTL_ 0 0 0 ENSG00000176915|ENST00000357997|ANKLE2;nc|ENSG00000176915|Q86XL3-2|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF ENSG00000176915|ENST00000357997|ANKLE2 ENSG00000176915|ENST00000357997|ANKLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.78759765625 2 499.287474 996.560395 1.0687 0.00053361 -1.3919 -0.00069498 -0.32321 -0.00016137 499.7878690636605 57.285 0.52946 51.258 51.022 51.552 -6.0275 70 29 3 0 0 0 0.078314 1 36733 36733 38.176 3.7738 1 94334000 60594 8633 40455 41368 70587 70587 0.061977429602734446 SPRDSPAVSL 10 Unmodified _SPRDSPAVSL_ 0 0 0 nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1;ENST00000562659.1_1_16:85698640-85699994:+|nuORF nc|ENSG00000131149|Q14687-2|GSE1 nc|ENSG00000131149|Q14687-2|GSE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7717895507812 2 514.772188 1027.52982 NaN NaN NaN NaN NaN NaN NaN 35.223 1 35.223 34.723 35.723 0 0 0 0 0.27319 1 18612 18612 38.615 0.43918 1 60595 4304 40456 41369 70588 70588 0.017159645752371944 SPREAARVL 9 Unmodified _SPREAARVL_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MSMS AL20221201_MKP_PDAC_01 4 499.7910766601562 2 499.790715 997.566878 NaN NaN NaN NaN NaN NaN NaN 23.551 1 20.724 20.224 21.224 -2.8273 0 0 0 0.061161 1 12754 12754 53.404 19.002 1 60596 6465 40457 41370 70589 70589 0.06799680911649375 SPREAARVLV 10 Unmodified _SPREAARVLV_ 0 0 0 nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 nc|ENSG00000156521|Q2T9J0-2|TYSND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5527038574219 3 366.552374 1096.63529 NaN NaN NaN NaN NaN NaN NaN 28.784 1 28.722 28.222 29.222 -0.062159 0 0 0 0.81542 1 14868 14868 11.631 5.001 1 60597 6465 40458 41371 70590 70590 0.09083925491495393 SPREALIRL 9 Unmodified _SPREALIRL_ 0 0 0 ENSG00000166261|ENST00000530393|ZNF202 ENSG00000166261|ENST00000530393|ZNF202 ENSG00000166261|ENST00000530393|ZNF202 MSMS AL20221201_MKP_PDAC_01 4 352.2168273925781 3 352.217102 1053.62948 NaN NaN NaN NaN NaN NaN NaN 47.194 1 42.114 41.614 42.614 -5.0805 0 0 0 0.028685 1 29264 29264 55.249 22.351 1 60598 7459 40459 41372 70591 70591 0.10480826979846825 SPREEPRAPW 10 Unmodified _SPREEPRAPW_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B nc|ENSG00000206341|P01893|HLA-H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8755187988281 3 408.875516 1223.60472 -0.064581 -2.6406E-05 -0.075485 -3.0864E-05 -0.14007 -5.727E-05 408.8757180014483 31.178 0.58848 31.178 30.953 31.541 0 81 28 4 0 0 0 0.30444 1 16268 16268 29.281 7.4817 1 14533000 60599 16517;10636 40460 41373 70592 70592 0.001861471064557918 SPREEPRAPW 10 Unmodified _SPREEPRAPW_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B nc|ENSG00000206341|P01893|HLA-H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.875732421875 3 408.875516 1223.60472 0.30062 0.00012292 0.11397 4.6599E-05 0.41459 0.00016952 408.87548852114145 31.21 0.64034 31.107 30.864 31.505 -0.10269 55 25 3 0 0 0 0.28721 2 16241 16145;16241 25.997 11.779 1 12089000 60600 16517;10636 40460 41373 70593;70594 70594 0.001861471064557918 SPREEPRAPW 10 Unmodified _SPREEPRAPW_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B nc|ENSG00000206341|P01893|HLA-H MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8761291503906 3 408.875516 1223.60472 1.2048 0.00049262 -1.3664 -0.00055867 -0.16155 -6.6052E-05 408.8755494196113 34.186 0.61519 30.201 29.842 30.457 -3.9853 96 34 4 0 0 0 0.14688 2 19767 19645;19767 35.08 13.28 1 108450000 60601 16517;10636 40460 41373 70595;70596 70596 0.001861471064557918 SPREEPRAPW 10 Unmodified _SPREEPRAPW_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B nc|ENSG00000206341|P01893|HLA-H MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8093872070312 2 612.809636 1223.60472 0.9935 0.00060883 -0.27554 -0.00016886 0.71796 0.00043997 612.8097347402211 34.224 0.42709 30.239 29.984 30.411 -3.9853 46 23 3 0 0 0 0.0065755 1 19672 19672 93.938 51.983 1 14227000 60602 16517;10636 40460 41373 70597 70597 0.001861471064557918 SPREEPRAPW 10 Unmodified _SPREEPRAPW_ 0 0 0 nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000474381.1_1_6:31323854-31324663:-|nuORF nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B nc|ENSG00000206341|P01893|HLA-H MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.22412109375 3 408.875516 1223.60472 0.89285 0.00036507 -1.4318 -0.00058542 -0.53894 -0.00022036 408.8751071028054 34.477 0.090473 30.382 30.348 30.438 -4.0951 6 4 2 0 0 0 0.22458 1 19871 19871 18.853 6.6781 1 4581700 60603 16517;10636 40460 41373 70598 70598 0.001861471064557918 SPREFRERAL 10 Unmodified _SPREFRERAL_ 0 0 0 ENST00000454486.4_1_15:32828531-32828903:-|nuORF;ENSG00000156232|ENST00000286760|WHAMM ENST00000454486.4_1_15:32828531-32828903:-|nuORF ENST00000454486.4_1_15:32828531-32828903:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8984680175781 3 420.898432 1259.67347 0.48081 0.00020237 0.31385 0.0001321 0.79467 0.00033448 420.8984402102315 23.575 0.26504 20.748 20.579 20.844 -2.8273 35 14 3 0 0 0 0.35999 1 12721 12721 23.964 11.737 1 5831000 60604 6441 40461 41374 70599 70599 0.05401811406181878 SPREGRPNQSL 11 Unmodified _SPREGRPNQSL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.32568359375 2 620.823275 1239.632 0.034199 2.1231E-05 0.31573 0.00019601 0.34993 0.00021724 620.8237410401719 16.858 0.11556 14.301 14.246 14.361 -2.557 29 18 2 0 0 0 0.64653 1 8759 8759 8.9762 6.9165 1 2182800 60605 16188 40462 41375 70600 70600 0.021766306468634866 SPRELPNRL 9 Unmodified _SPRELPNRL_ 0 0 0 REV__ENSG00000260220|ENST00000638797|CCDC187 REV__ENSG00000260220|ENST00000638797|CCDC187 MSMS AL20221201_MKP_PDAC_01 4 361.2091369628906 3 361.208607 1080.60399 NaN NaN NaN NaN NaN NaN NaN 81.207 1 75.032 74.532 75.532 -6.1757 0 0 0 0.67641 1 53295 53295 10.151 0 1 + 60606 24576 40463 41376 70601 70601 0.06691352457414723 SPRENILVSL 10 Unmodified _SPRENILVSL_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3250122070312 2 564.324588 1126.63462 0.69808 0.00039394 0.2949 0.00016642 0.99298 0.00056036 564.3248316474724 60.211 0.2768 60.211 60.068 60.345 0 29 11 3 0 0 0 0.34306 1 33568 33568 28.495 0 1 4615900 60607 1685 40464 41377 70602 70602 0.07637086051818187 SPRESIQL 8 Unmodified _SPRESIQL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2573547363281 2 465.256174 928.497795 0.40451 0.0001882 1.0117 0.00047072 1.4163 0.00065892 465.2568229062212 40.367 0.38317 35.837 35.652 36.035 -4.5294 49 25 3 0 0 0 0.26367 2 24133 23994;24133 60.074 14.053 1 25517000 60608 4951 40465 41378 70603;70604 70604 0.03068596892092046 SPREVKEMEQF 11 Unmodified _SPREVKEMEQF_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.5596618652344 3 460.558977 1378.6551 0.71649 0.00032999 0.62467 0.0002877 1.3412 0.00061769 460.5591506001283 36.222 0.21975 32.03 31.899 32.118 -4.1928 19 12 2 0 0 0 0.038834 1 21171 21171 44.207 29.369 1 7614600 60609 4684 40466 41379 70605 70605 -0.019081113506899783 SPREVKEMEQF 11 Unmodified _SPREVKEMEQF_ 0 0 0 nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES nc|ENSG00000135269|Q9UGI8-2|TES nc|ENSG00000135269|Q9UGI8-2|TES MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 460.558977 1378.6551 -0.65484 -0.00030159 0.68951 0.00031756 0.034673 1.5969E-05 460.5592377279638 32.325 0.13186 32.325 32.223 32.355 0 0.14754 4.3236E-05 NaN 44.207 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1526800 60610 4684 40466 41379 -0.019081113506899783 SPREVQVTM 9 Oxidation (M) _SPREVQVTM(Oxidation (M))_ SPREVQVTM(1) SPREVQVTM(50) 0 0 1 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 ENSG00000130513|ENST00000252809|GDF15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7664794921875 2 531.766049 1061.51754 1.1048 0.00058748 -0.67607 -0.00035951 0.42869 0.00022796 531.7659064268199 21.703 0.40475 18.969 18.8 19.204 -2.7348 45 22 3 0 0 0 0.040683 1 11618 11618 49.554 16.769 1 2916700 60611 4217 40467 41380 70606 70606 747 -0.010753951594551836 SPRFIEFVCK 10 Unmodified _SPRFIEFVCK_ 0 0 0 ENSG00000085382|ENST00000262903|HACE1;nc|ENSG00000085382|Q8IYU2-4|HACE1;nc|ENSG00000085382|Q8IYU2-3|HACE1 ENSG00000085382|ENST00000262903|HACE1 ENSG00000085382|ENST00000262903|HACE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3255004882812 2 613.323534 1224.63251 0.33567 0.00020587 2.0919 0.001283 2.4275 0.0014889 613.3243970788749 34.692 0.19014 34.719 34.606 34.796 0.027401 11 8 2 0 0 0 0.5933 1 18302 18302 11.495 3.3392 1 2270400 60612 1408 40468 41381 70607 70607 0.029183340423287518 SPRFPAQYL 9 Unmodified _SPRFPAQYL_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000485349.5_1_6:31936258-31936911:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7884521484375 2 539.787641 1077.56073 0.27105 0.00014631 -0.13341 -7.2013E-05 0.13764 7.4297E-05 539.788153469846 55.005 0.91333 54.936 54.482 55.395 -0.068737 68 45 2 0 0 0 0.044296 2 29906 29906;30008 47.594 15.289 1 6973300 60613 10272 40469 41382 70608;70609 70608 0.02505162680131434 SPRFRAAL 8 Unmodified _SPRFRAAL_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000480906.5_1_3:195057651-195163594:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2694396972656 2 459.269419 916.524284 0.14185 6.5148E-05 1.8189 0.00083537 1.9608 0.00090052 459.27011052469567 30.081 0.47627 30.111 29.894 30.371 0.030106 33 19 3 0 0 0 0.80311 1 15719 15719 4.756 0 1 1576400 60614 3030 40470 41383 70610 70610 0.06268330574084757 SPRGAGWLF 9 Unmodified _SPRGAGWLF_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-2|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.761962890625 2 495.761426 989.5083 0.95408 0.000473 -0.43755 -0.00021692 0.51654 0.00025608 495.76135433063314 64.449 0.39206 64.438 64.254 64.646 -0.010529 52 19 4 0 0 0 0.2324 1 35274 35274 20.415 4.5674 1 10401000 60615 3435 40471 41384 70611 70611 0.013126243371857527 SPRGAGYLF 9 Unmodified _SPRGAGYLF_ 0 0 0 ENSG00000149923|ENST00000279387|PPP4C;ENST00000566749.5_1_16:30094185-30096380:+|nuORF ENSG00000149923|ENST00000279387|PPP4C ENSG00000149923|ENST00000279387|PPP4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2534484863281 2 484.253434 966.492316 0.49477 0.0002396 0.070434 3.4108E-05 0.56521 0.0002737 484.25345729398117 48.533 0.29467 48.161 47.983 48.278 -0.37171 31 14 3 0 0 0 0.40476 1 25994 25994 12.241 12.241 1 8853700 60616 6041 40472 41385 70612 70612 0.007729181002900987 SPRGAGYTF 9 Unmodified _SPRGAGYTF_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;ENST00000523804.1_1_8:30651411-30651755:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2351684570312 2 478.235242 954.45593 -0.38396 -0.00018362 0.75788 0.00036244 0.37392 0.00017882 478.23548961385103 31.923 0.24427 31.923 31.799 32.043 0 28 11 3 0 0 0 0.15471 1 16654 16654 27.629 4.4804 1 3856900 60617 2224 40473 41386 70613 70613 -0.023119587964288257 SPRGAGYTF 9 Unmodified _SPRGAGYTF_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;ENST00000523804.1_1_8:30651411-30651755:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2352294921875 2 478.235242 954.45593 0.16256 7.7743E-05 0.64154 0.00030681 0.80411 0.00038455 478.23541293234825 31.866 0.19472 31.737 31.647 31.842 -0.12915 16 7 3 0 0 0 0.21643 1 16582 16582 21.537 0.66577 1 2160300 60618 2224 40473 41386 70614 70614 -0.023119587964288257 SPRGAGYTF 9 Unmodified _SPRGAGYTF_ 0 0 0 ENSG00000104695|ENST00000221138|PPP2CB;ENSG00000113575|ENST00000481195|PPP2CA;ENST00000523804.1_1_8:30651411-30651755:-|nuORF ENSG00000104695|ENST00000221138|PPP2CB ENSG00000104695|ENST00000221138|PPP2CB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.235242 954.45593 0.16256 7.7743E-05 0.64154 0.00030681 0.80411 0.00038455 478.23541293234825 31.866 0.19472 31.737 31.647 31.842 -0.12915 -0.09299 -7.3232E-05 NaN 27.629 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2160300 60619 2224 40473 41386 -0.023119587964288257 SPRGFPLGL 9 Unmodified _SPRGFPLGL_ 0 0 0 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 ENSG00000109171|ENST00000264313|SLAIN2 MSMS AL20221201_MKP_PDAC_01 4 472.2721557617188 2 472.271627 942.528701 NaN NaN NaN NaN NaN NaN NaN 69.671 1 63.496 62.996 63.996 -6.1757 0 0 0 0.16551 1 45505 45505 34.932 0.53034 1 60620 2636 40474 41387 70615 70615 0.055137949969775946 SPRGINAIF 9 Unmodified _SPRGINAIF_ 0 0 0 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7742614746094 2 487.774534 973.534515 0.31732 0.00015478 -0.974 -0.00047509 -0.65668 -0.00032031 487.77405154801215 54.402 0.23993 54.335 54.182 54.422 -0.06694 17 11 2 0 0 0 0.4887 1 29525 29525 8.1555 1.4324 1 3407100 60621 7006 40475 41388 70616 70616 0.04668893508664951 SPRGLRTEV 9 Unmodified _SPRGLRTEV_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7876892089844 2 507.788173 1013.56179 0.57839 0.0002937 -0.042968 -2.1819E-05 0.53543 0.00027188 507.7881462725467 22.303 0.35949 19.568 19.374 19.733 -2.7348 46 18 3 0 0 0 0.32235 1 11921 11921 16.149 3.1066 1 18874000 60622 4412 40476 41389 70617 70617 0.05555377049051913 SPRGPGCSL 9 Carbamidomethyl (C) _SPRGPGC(Carbamidomethyl (C))SL_ SPRGPGC(1)SL SPRGPGC(42)SL 0 1 0 ENSG00000077348|ENST00000221233|EXOSC5;ENST00000593523.1_1_19:41897706-41903233:-|nuORF ENSG00000077348|ENST00000221233|EXOSC5 ENSG00000077348|ENST00000221233|EXOSC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.7268981933594 2 465.726726 929.4389 0.18747 8.7311E-05 -0.022645 -1.0546E-05 0.16483 7.6765E-05 465.72701486155864 24.002 0.34058 21.175 20.983 21.323 -2.8273 45 19 3 0 0 0 0.060956 1 13090 13090 42.312 16.913 1 8926000 60623 1215 40477 41390 70618 70618 110 -0.028642026738793902 SPRGYFHTF 9 Unmodified _SPRGYFHTF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.1822509765625 3 371.182169 1110.52468 -0.10394 -3.8581E-05 0.07624 2.8299E-05 -0.027702 -1.0283E-05 371.1821603172039 37.667 0.36634 37.684 37.515 37.881 0.01704 67 17 5 0 0 0 0.08691 1 19973 19973 40.239 23.126 1 55915000 60624 2413 40478 41391 70619 70619 -0.026162944967154544 SPRGYFHTF 9 Unmodified _SPRGYFHTF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2693481445312 2 556.269616 1110.52468 0.16952 9.4296E-05 -0.065641 -3.6514E-05 0.10387 5.7782E-05 556.2695663414124 37.682 0.26412 37.699 37.552 37.816 0.01704 39 12 4 0 0 0 0.01958 1 19990 19990 63.961 24.003 1 11332000 60625 2413 40478 41391 70620 70620 -0.026162944967154544 SPRGYFHTF 9 Unmodified _SPRGYFHTF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.1828002929688 3 371.182169 1110.52468 2.1552 0.00079996 -0.34172 -0.00012684 1.8135 0.00067312 371.1819922535262 41.786 0.51445 37.178 36.952 37.467 -4.6079 103 32 4 0 0 0 0.08691 2 25242 25102;25242 33.445 13.819 1 94592000 60626 2413 40478 41391 70621;70622 70622 -0.026162944967154544 SPRGYFHTF 9 Unmodified _SPRGYFHTF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.182169 1110.52468 0.020852 7.7398E-06 -0.16088 -5.9715E-05 -0.14003 -5.1975E-05 371.1822423172985 38.047 0.28559 37.776 37.66 37.946 -0.27133 0.046192 -0.00019579 NaN 40.239 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5755800 60627 2413 40478 41391 -0.026162944967154544 SPRHKEWLF 9 Unmodified _SPRHKEWLF_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5476379394531 3 400.548852 1198.62473 0.27426 0.00010986 -0.66846 -0.00026775 -0.3942 -0.00015789 400.54840205848103 40.638 0.31378 40.643 40.424 40.738 0.0050583 36 14 4 0 0 0 0.24903 2 21730 21623;21730 19.626 5.9097 1 13640000 60628 2181 40479 41392 70623;70624 70624 0.033359428370886235 SPRHKEWLF 9 Unmodified _SPRHKEWLF_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5490417480469 3 400.548852 1198.62473 1.1877 0.00047573 -0.07752 -3.1051E-05 1.1102 0.00044468 400.5488138940387 88.942 0.4555 82.766 82.531 82.986 -6.1757 69 25 3 0 0 0 0.37781 3 58691 58572;58691;58840 13.519 3.9747 1 24271000 60629 2181 40479 41392 70625;70626;70627 70626 0.033359428370886235 SPRIPPLVRL 10 Unmodified _SPRIPPLVRL_ 0 0 0 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2490234375 3 383.248514 1146.72371 0.68292 0.00026173 -0.26177 -0.00010032 0.42115 0.00016141 383.2484454719775 58.182 0.4591 58.122 57.935 58.394 -0.060719 56 22 3 0 0 0 0.038363 2 31753 31656;31753 62.869 40.094 1 12058000 60630 3788 40480 41393 70628;70629 70629 0.15621965802006343 SPRIPPLVRL 10 Unmodified _SPRIPPLVRL_ 0 0 0 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2486572265625 3 383.248514 1146.72371 0.53143 0.00020367 0.32397 0.00012416 0.85541 0.00032783 383.2486216665102 85.035 0.47587 78.859 78.532 79.008 -6.1757 42 27 2 0 0 0 0.46077 1 55963 55963 16.275 10.04 1 17208000 60631 3788 40480 41393 70630 70630 0.15621965802006343 SPRIPPLVRL 10 Unmodified _SPRIPPLVRL_ 0 0 0 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 ENSG00000124466|ENST00000244333|LYPD3 MSMS AL20221201_MKP_PDAC_01 4 383.2483825683594 3 383.248514 1146.72371 NaN NaN NaN NaN NaN NaN NaN 84.39 1 78.214 77.714 78.714 -6.1757 0 0 0 0.27319 1 55514 55514 33.821 15.958 1 60632 3788 40480 41393 70631 70631 0.15621965802006343 SPRIYSNSL 9 Unmodified _SPRIYSNSL_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7739868164062 2 518.774731 1035.53491 -0.37295 -0.00019348 0.87908 0.00045605 0.50613 0.00026257 518.7750495388209 34.317 0.21195 34.317 34.19 34.402 0 25 10 3 0 0 0 0.0089732 1 18052 18052 86.332 24.974 1 7723800 60633 8389 40481 41394 70632 70632 0.018562684378593985 SPRIYSNSL 9 Unmodified _SPRIYSNSL_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7750854492188 2 518.774731 1035.53491 -0.34249 -0.00017767 -0.14991 -7.7767E-05 -0.49239 -0.00025544 518.774607353499 34.473 0.17693 34.281 34.174 34.351 -0.19131 19 7 3 0 0 0 0.011671 1 17999 17999 75.761 29.74 1 6999000 60634 8389 40481 41394 70633 70633 0.018562684378593985 SPRIYSNSL 9 Unmodified _SPRIYSNSL_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2771606445312 2 518.774731 1035.53491 0.49512 0.00025685 1.6304 0.00084583 2.1256 0.0011027 518.7753735537473 38.793 0.29291 34.342 34.152 34.445 -4.4509 44 18 3 0 0 0 0.011291 1 22882 22882 76.825 15.467 1 42926000 60635 8389 40481 41394 70634 70634 0.018562684378593985 SPRKAIHSDF 10 Unmodified _SPRKAIHSDF_ 0 0 0 ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP ENSG00000047578|ENST00000261588|KATNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.8743591308594 3 386.540245 1156.59891 0.77244 0.00029858 0.098316 3.8003E-05 0.87076 0.00033658 386.540226837645 17.31 0.19965 14.724 14.597 14.796 -2.5866 50 29 2 0 0 0 0.22237 1 9009 9009 23.016 16.392 1 4384100 60636 685 40482 41395 70635 70635 0.026870485947938505 SPRKDGLSY 9 Unmodified _SPRKDGLSY_ 0 0 0 ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7659912109375 2 511.766906 1021.51926 -0.28819 -0.00014749 0.10774 5.514E-05 -0.18044 -9.2345E-05 511.7669448723312 18.94 0.22592 18.94 18.806 19.032 0 32 18 2 0 0 0 0.47846 1 9434 9434 8.7454 8.7454 1 1959100 60637 10448 40483 41396 70636 70636 0.009359819208157205 SPRKDGLSY 9 Unmodified _SPRKDGLSY_ 0 0 0 ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7667846679688 2 511.766906 1021.51926 0.97217 0.00049752 -0.951 -0.00048669 0.021163 1.0831E-05 511.7663532997235 20.17 0.31243 17.514 17.333 17.645 -2.6564 45 22 3 0 0 0 0.076472 1 10759 10759 38.615 0.64075 1 6900500 60638 10448 40483 41396 70637 70637 0.009359819208157205 SPRKDGLSY 9 Unmodified _SPRKDGLSY_ 0 0 0 ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.766906 1021.51926 -0.28819 -0.00014749 0.10774 5.514E-05 -0.18044 -9.2345E-05 511.7669448723312 18.94 0.22592 18.94 18.806 19.032 0 0 0 NaN 8.7454 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1959100 60639 10448 40483 41396 0.009359819208157205 SPRKDGLVSL 10 Unmodified _SPRKDGLVSL_ 0 0 0 ENSG00000108479|ENST00000588479|GALK1;ENST00000592494.1_1_17:73759392-73761232:-|nuORF;ENST00000589030.1_1_17:73759945-73761208:-|nuORF ENSG00000108479|ENST00000588479|GALK1 ENSG00000108479|ENST00000588479|GALK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8765869140625 3 357.876746 1070.60841 -0.60478 -0.00021644 0.42898 0.00015352 -0.1758 -6.2916E-05 357.87690106038565 34.45 0.23397 34.45 34.326 34.56 0 27 11 3 0 0 0 0.47869 1 18131 18131 19.987 2.5443 1 4842700 60640 2575 40484 41397 70638 70638 0.07592816880332975 SPRKDGLVSL 10 Unmodified _SPRKDGLVSL_ 0 0 0 ENSG00000108479|ENST00000588479|GALK1;ENST00000592494.1_1_17:73759392-73761232:-|nuORF;ENST00000589030.1_1_17:73759945-73761208:-|nuORF ENSG00000108479|ENST00000588479|GALK1 ENSG00000108479|ENST00000588479|GALK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8778381347656 3 357.876746 1070.60841 1.691 0.00060518 0.7408 0.00026512 2.4318 0.0008703 357.8773182345059 38.081 0.41089 33.713 33.473 33.884 -4.3689 52 24 3 0 0 0 0.5933 1 22330 22330 14.218 0 1 25058000 60641 2575 40484 41397 70639 70639 0.07592816880332975 SPRKGWAL 8 Unmodified _SPRKGWAL_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7642211914062 2 457.763969 913.513385 0.18206 8.3342E-05 1.2709 0.00058179 1.453 0.00066513 457.7646116389977 30.102 0.25996 30.132 29.995 30.255 0.030104 21 10 3 0 0 0 0.56356 1 15724 15724 29.082 8.2104 1 1849100 60642 2424 40485 41398 70640 70640 0.05316928199795257 SPRKGWAL 8 Unmodified _SPRKGWAL_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7646484375 2 457.763969 913.513385 0.94633 0.0004332 0.25774 0.00011799 1.2041 0.00055118 457.764149402059 32.558 0.33821 28.702 28.516 28.854 -3.8562 26 17 2 0 0 0 0.29252 1 18608 18608 56.177 16.22 1 8681000 60643 2424 40485 41398 70641 70641 0.05316928199795257 SPRKGWALL 9 Unmodified _SPRKGWALL_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3065795898438 2 514.306001 1026.59745 1.0586 0.00054443 -0.48622 -0.00025006 0.57236 0.00029437 514.3055300919173 50.253 0.46091 44.714 44.483 44.944 -5.5391 58 29 3 0 0 0 0.069655 1 31517 31517 40.239 4.1122 1 29233000 60644 2424 40486 41399 70642 70642 0.0852145929670769 SPRKLPTSL 9 Unmodified _SPRKLPTSL_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.9633483886719 2 499.803291 997.59203 0.13591 6.793E-05 0.11775 5.8853E-05 0.25367 0.00012678 499.8034332141518 28.867 0.21171 28.897 28.798 29.009 0.030106 18 8 3 0 0 0 0.015688 2 15034 15034;15041 67.838 20.089 1 6358100 60645 410 40487 41400 70643;70644 70643 0.09313735714226823 SPRKLPTSL 9 Unmodified _SPRKLPTSL_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8036193847656 2 499.803291 997.59203 1.116 0.00055778 -0.33135 -0.00016561 0.78465 0.00039217 499.80300347766047 32.181 0.40829 28.324 28.086 28.494 -3.8562 52 23 3 0 0 0 0.085319 1 18246 18246 36.506 0.37917 1 43177000 60646 410 40487 41400 70645 70645 0.09313735714226823 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8145141601562 2 544.81419 1087.61383 -0.071743 -3.9086E-05 0.41807 0.00022777 0.34633 0.00018868 544.8144149693176 30.367 0.22343 30.398 30.233 30.456 0.030104 21 9 3 0 0 0 0.1685 1 15848 15848 26.268 8.1332 1 2104000 60647 16283 40488 41401 70646 70646 0.07352540462807156 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.5455932617188 3 363.545219 1087.61383 -0.14873 -5.4069E-05 0.70939 0.00025789 0.56066 0.00020383 363.54535433927776 30.346 0.33769 30.376 30.182 30.519 0.030106 35 14 3 0 0 0 0.30202 1 15857 15857 12.175 0 1 8129700 60648 16283 40488 41401 70647 70647 0.07352540462807156 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.5452880859375 3 363.545219 1087.61383 1.1524 0.00041895 -0.5366 -0.00019508 0.6158 0.00022387 363.54518725490135 32.923 0.41175 29.067 28.776 29.187 -3.8562 52 23 3 0 0 0 0.15471 2 18763 18763;18906 20.581 8.3403 1 30027000 60649 16283 40488 41401 70648;70649 70648 0.07352540462807156 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.814208984375 2 544.81419 1087.61383 0.38594 0.00021026 -1.133 -0.00061728 -0.74707 -0.00040701 544.8137786049185 32.92 0.36931 29.064 28.832 29.202 -3.8562 32 21 3 0 0 0 0.012668 1 18790 18790 72.968 33.018 1 14097000 60650 16283 40488 41401 70650 70650 0.07352540462807156 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.545219 1087.61383 -0.60388 -0.00021954 0.2671 9.7103E-05 -0.33678 -0.00012243 363.54558129498014 30.661 0.18719 30.661 30.524 30.711 0 0.15455 -0.00036964 NaN 12.175 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 886070 60651 16283 40488 41401 0.07352540462807156 SPRKNQIVF 9 Unmodified _SPRKNQIVF_ 0 0 0 nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH nc|ENSG00000154380|Q8N8S7|ENAH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 363.545219 1087.61383 0.49422 0.00017967 0.46609 0.00016944 0.96031 0.00034912 363.5454053234217 30.584 0.22911 30.482 30.365 30.594 -0.10269 -0.024606 -0.00015261 NaN 12.175 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1106200 60652 16283 40488 41401 0.07352540462807156 SPRKPIDSL 9 Unmodified _SPRKPIDSL_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7929382324219 2 506.792924 1011.57129 0.35002 0.00017739 0.026451 1.3405E-05 0.37647 0.00019079 506.7928864047627 27.715 0.3037 24.679 24.559 24.863 -3.0365 23 15 2 0 0 0 0.013396 1 15399 15399 70.929 28.616 1 6669500 60653 7692 40489 41402 70651 70651 0.06597145334569632 SPRKPPLFL 9 Unmodified _SPRKPPLFL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2186279296875 3 352.218443 1053.6335 0.32146 0.00011322 1.1714 0.0004126 1.4929 0.00052583 352.2187409736296 48.049 0.56406 48.011 47.68 48.244 -0.038647 84 27 4 0 0 0 0.18144 3 25890 25785;25890;25990 23.801 14.825 1 42200000 60654 9009 40490 41403 70652;70653;70654 70653 0.10882916473542537 SPRKPPLFL 9 Unmodified _SPRKPPLFL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8244018554688 2 527.824027 1053.6335 0.41787 0.00022056 0.67258 0.000355 1.0904 0.00057556 527.8243210726233 48.017 0.54316 47.978 47.68 48.224 -0.038643 80 26 4 0 0 0 0.085319 2 25901 25800;25901 36.506 16.053 1 42379000 60655 9009 40490 41403 70655;70656 70656 0.10882916473542537 SPRKPPLFL 9 Unmodified _SPRKPPLFL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2190551757812 3 352.218443 1053.6335 1.1163 0.00039317 0.26678 9.3966E-05 1.383 0.00048713 352.21850541059746 51.927 0.50234 46.192 45.951 46.454 -5.7345 70 33 3 0 0 0 0.040683 2 32625 32625;32769 46.022 13.985 1 121630000 60656 9009 40490 41403 70657;70658 70657 0.10882916473542537 SPRKPPLFL 9 Unmodified _SPRKPPLFL_ 0 0 0 ENSG00000182010|ENST00000373789|RTKN2;nc|ENSG00000182010|Q8IZC4-2|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 ENSG00000182010|ENST00000373789|RTKN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.8248291015625 2 527.824027 1053.6335 0.43582 0.00023003 -0.47694 -0.00025174 -0.041123 -2.1706E-05 527.8235664833754 51.953 0.43495 46.219 46.019 46.453 -5.7345 66 29 3 0 0 0 0.012668 1 32654 32654 72.968 36.841 1 119940000 60657 9009 40490 41403 70659 70659 0.10882916473542537 SPRLAAQKL 9 Unmodified _SPRLAAQKL_ 0 0 0 ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF ENSG00000117724|ENST00000366955|CENPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3031616210938 2 492.303458 982.592364 0.48704 0.00023977 -0.28848 -0.00014202 0.19856 9.7752E-05 492.3033269272186 27.157 0.21392 24.12 23.966 24.18 -3.0365 17 10 2 0 0 0 0.044296 1 14982 14982 47.594 1.8948 1 9643100 60658 3335 40491 41404 70660 70660 0.10037155434076794 SPRLFYLY 8 Unmodified _SPRLFYLY_ 0 0 0 REV__ENST00000563612.1_3_16:77225155-77225236:+|nuORF REV__ENST00000563612.1_3_16:77225155-77225236:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 353.1943054199219 3 353.527165 1057.55967 NaN NaN NaN NaN NaN NaN NaN 32.183 1 28.327 27.827 28.827 -3.8562 0 0 0 0.93813 1 18306 18306 13.042 4.2971 1 + 60659 28879 40492 41405 70661 70661 0.03318948311220993 SPRLGKSL 8 Unmodified _SPRLGKSL_ 0 0 0 nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 nc|ENSG00000138642|Q8IVU3-2|HERC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2633972167969 2 429.263802 856.513051 0.48073 0.00020636 0.013716 5.8877E-06 0.49445 0.00021225 429.2637970790485 22.692 0.36719 19.913 19.722 20.089 -2.7784 47 26 2 0 0 0 0.48192 1 12182 12182 36.506 3.7205 1 16091000 60660 5077 40493 41406 70662 70662 0.07905508479939272 SPRLLEVTNTI 11 Unmodified _SPRLLEVTNTI_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8563842773438 2 621.856252 1241.69795 NaN NaN NaN NaN NaN NaN NaN 58.826 1 58.335 57.835 58.835 -0.49079 0 0 0 0.70037 1 31997 31997 20.581 10.507 1 60661 8296;16388 40494 41407 70663 70663 0.08677026769055374 SPRLMSNAL 9 Unmodified _SPRLMSNAL_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.766845703125 2 494.765852 987.51715 0.5768 0.00028538 -0.77673 -0.0003843 -0.19992 -9.8914E-05 494.76538476859184 46.181 0.42495 41.226 41.018 41.443 -4.9549 67 28 3 0 0 0 0.017075 2 28412 28412;28546 66.457 15.602 1 40958000 60662 4927 40495 41408 70664;70665 70664 0.022892299113550507 SPRLPGRAGTL 11 Unmodified _SPRLPGRAGTL_ 0 0 0 ENST00000413171.6_1_7:872152-892516:+|nuORF;nc|ENSG00000164828|O94901-9|SUN1;ENST00000340926.7_1_7:889513-889771:+|nuORF ENST00000413171.6_1_7:872152-892516:+|nuORF ENST00000413171.6_1_7:872152-892516:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5570678710938 3 375.556007 1123.64619 1.6021 0.00060169 0.44024 0.00016533 2.0424 0.00076703 375.556256308384 34.217 0.37523 30.232 29.984 30.359 -3.9853 30 20 2 0 0 0 0.37345 1 19681 19681 22.911 7.6627 1 16422000 60663 12994 40496 41409 70666 70666 0.08931327865821004 SPRLPVGGF 9 Unmodified _SPRLPVGGF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2633972167969 2 465.263802 928.513051 0.0079231 3.6863E-06 -0.88413 -0.00041136 -0.87621 -0.00040767 465.2634815917631 54.361 0.29906 53.895 53.765 54.064 -0.46664 24 15 2 0 0 0 0.098164 1 29461 29461 33.445 14.188 1 3609500 60664 6277 40497 41410 70667 70667 0.045935084799680226 SPRLPVGGF 9 Unmodified _SPRLPVGGF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2640991210938 2 465.263802 928.513051 -0.09741 -4.5322E-05 0.5322 0.00024761 0.43479 0.00020229 465.2641401471064 54.028 0.37652 53.961 53.765 54.142 -0.066936 60 18 4 0 0 0 0.01958 2 29361 29262;29361 63.961 31.655 1 31705000 60665 6277 40497 41410 70668;70669 70669 0.045935084799680226 SPRLPVGGF 9 Unmodified _SPRLPVGGF_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2650451660156 2 465.263802 928.513051 0.91451 0.00042549 0.66409 0.00030898 1.5786 0.00073447 465.26405548223596 59.881 0.45369 53.767 53.587 54.041 -6.1147 46 25 2 0 0 0 0.069655 2 38451 38451;38595 40.239 26.333 1 84753000 60666 6277 40497 41410 70670;70671 70670 0.045935084799680226 SPRLRGDP 8 Unmodified _SPRLRGDP_ 0 0 0 REV__ENST00000507635.5_1_5:137780026-137781437:+|nuORF REV__ENST00000507635.5_1_5:137780026-137781437:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2494201660156 2 449.248683 896.482814 0.82513 0.00037069 0.27516 0.00012362 1.1003 0.0004943 449.24881880825336 22.307 0.263 19.572 19.431 19.694 -2.7348 21 13 2 0 0 0 0.64853 1 11965 11965 21.747 2.4897 1 4804800 + 60667 19863 40498 41411 70672 70672 0.030431498147549974 SPRLSLLYL 9 Unmodified _SPRLSLLYL_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3237915039062 2 531.321317 1060.62808 0.42675 0.00022674 3.4395 0.0018275 3.8662 0.0020542 531.3234332875345 78.824 0.33075 78.879 78.707 79.038 0.05497 27 12 3 0 0 0 0.1685 1 43523 43523 26.268 3.5319 1 9360300 60668 2139 40499 41412 70673 70673 0.1001919289108173 SPRLSLLYL 9 Unmodified _SPRLSLLYL_ 0 0 0 ENSG00000103429|ENST00000261658|BFAR;nc|ENSG00000103429|Q9NZS9-2|BFAR ENSG00000103429|ENST00000261658|BFAR ENSG00000103429|ENST00000261658|BFAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3211059570312 2 531.321317 1060.62808 1.1835 0.00062882 -0.08079 -4.2925E-05 1.1027 0.0005859 531.3211486075141 97.905 0.20329 91.73 91.614 91.817 -6.1757 19 12 2 0 0 0 0.085319 1 64879 64879 36.506 3.7205 1 56655000 60669 2139 40499 41412 70674 70674 0.1001919289108173 SPRLSSSL 8 Unmodified _SPRLSSSL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.738037109375 2 423.737617 845.460681 1.6979 0.00071947 -0.24891 -0.00010547 1.449 0.000614 423.73754864236207 33.899 0.35131 29.914 29.714 30.065 -3.9853 27 18 2 0 0 0 0.25361 1 19452 19452 61.602 3.8799 1 6203700 60670 802 40500 41413 70675 70675 0.03176925346326698 SPRLSSSL 8 Unmodified _SPRLSSSL_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 423.737617 845.460681 -0.67647 -0.00028665 1.0454 0.00044298 0.36894 0.00015633 423.7380476620033 30.056 0.14756 30.056 29.953 30.1 0 0.071381 0.00092408 NaN 61.602 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 779830 60671 802 40500 41413 0.03176925346326698 SPRLTGRSL 9 Unmodified _SPRLTGRSL_ 0 0 0 ENST00000609350.1_1_2:128644156-128644243:+|nuORF ENST00000609350.1_1_2:128644156-128644243:+|nuORF ENST00000609350.1_1_2:128644156-128644243:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7921752929688 2 493.790715 985.566878 0.271 0.00013382 0.22585 0.00011152 0.49685 0.00024534 493.790641229805 24.293 0.2746 21.466 21.34 21.614 -2.8273 26 15 2 0 0 0 0.036857 1 13202 13202 51.63 5.9302 1 7802800 60672 15878 40501 41414 70676 70676 0.07351680911676794 SPRLTLLSL 9 Unmodified _SPRLTLLSL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3135986328125 2 500.313492 998.612431 0.26193 0.00013105 -0.15155 -7.5822E-05 0.11038 5.5226E-05 500.3134647396012 75.032 0.32478 75.078 74.899 75.224 0.045959 37 15 3 0 0 0 0.040683 1 41327 41327 49.554 0 1 20260000 60673 10258 40502 41415 70677 70677 0.1130690637405678 SPRLVQNCL 9 Carbamidomethyl (C) _SPRLVQNC(Carbamidomethyl (C))L_ SPRLVQNC(1)L SPRLVQNC(42)L 0 1 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7900390625 2 543.789858 1085.56516 0.2196 0.00011942 1.8695 0.0010166 2.0891 0.001136 543.79119008887 41.415 1.447 36.807 36.339 37.786 -4.6079 193 92 4 0 0 0 0.062454 1 24850 24850 41.956 18.807 1 174400000 60674 8363 40503 41416 70678 70678 804 0.0258030383138248 SPRMEKALSQL 11 Unmodified _SPRMEKALSQL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5644226074219 3 420.564062 1258.67036 0.90261 0.0003796 -0.28565 -0.00012013 0.61696 0.00025947 420.56416234288815 42.122 0.10258 37.438 37.39 37.492 -4.6846 7 5 2 0 0 0 0.55668 1 25417 25417 13.535 1.3073 1 5985900 60675 7618 40504 41417 70679 70679 0.05136800237164607 SPRMPSSGF 9 Oxidation (M) _SPRM(Oxidation (M))PSSGF_ SPRM(1)PSSGF SPRM(69)PSSGF 0 0 1 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2257080078125 2 491.226559 980.438566 0.19922 9.7861E-05 -1.124 -0.00055216 -0.92483 -0.0004543 491.2258553983535 24.081 0.36811 21.254 21.024 21.392 -2.8273 43 20 3 0 0 0 0.014182 1 13099 13099 69.338 34.936 1 6193700 60676 7370 40505 41418 70680 70680 1271 -0.052436223937206705 SPRMPSSGF 9 Oxidation (M) _SPRM(Oxidation (M))PSSGF_ SPRM(1)PSSGF SPRM(50)PSSGF 0 0 1 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2279357910156 2 491.226559 980.438566 0.22905 0.00011252 0.011946 5.8681E-06 0.241 0.00011838 491.22653771845705 24.336 0.33537 21.509 21.374 21.709 -2.8273 33 18 2 0 0 0 0.040683 2 13330 13218;13330 49.554 19.302 1 6769000 60677 7370 40505 41418 70681;70682 70682 1271 -0.052436223937206705 SPRMPSSGF 9 Unmodified _SPRMPSSGF_ 0 0 0 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 ENSG00000165660|ENST00000298492|ABRAXAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2298583984375 2 483.229102 964.443651 0.41663 0.00020133 0.73195 0.0003537 1.1486 0.00055503 483.22923359949607 38.58 0.32127 34.212 34.012 34.333 -4.3689 45 20 3 0 0 0 0.014182 2 22866 22729;22866 69.338 40.074 1 33553000 60678 7370 40505 41419 70683;70684 70684 -0.039993185311118395 SPRNITLTL 9 Unmodified _SPRNITLTL_ 0 0 0 REV__ENST00000318602.11_1_12:9268543-9268723:-|nuORF REV__ENST00000318602.11_1_12:9268543-9268723:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.7434387207031 2 507.800749 1013.58694 NaN NaN NaN NaN NaN NaN NaN 21.942 1 19.207 18.707 19.707 -2.7348 0 0 0 0.41346 1 11784 11784 19.257 0 1 + 60679 25485 40506 41420 70685 70685 0.08069431851606623 SPRPDPREAL 10 Unmodified _SPRPDPREAL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8714599609375 3 379.871883 1136.59382 -0.67985 -0.00025826 -0.40962 -0.0001556 -1.0895 -0.00041386 379.8717293911952 27.424 0.50489 27.424 27.174 27.679 0 58 24 3 0 0 0 0.25982 1 14149 14149 25.997 13.141 1 9568600 60680 10835 40507 41421 70686 70686 0.030987447321649597 SPRPDPREAL 10 Unmodified _SPRPDPREAL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 379.871883 1136.59382 1.5255 0.0005795 0.12916 4.9064E-05 1.6547 0.00062857 380.2062532476943 30.819 0.31826 27.322 27.094 27.413 -3.497 -0.050934 0.00045359 NaN 25.997 22 14 2 NaN NaN NaN NaN 0 NaN NaN 0 40277000 60681 10835 40507 41421 0.030987447321649597 SPRPDRALVQL 11 Unmodified _SPRPDRALVQL_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526985.1_1_8:145059868-145060277:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9105834960938 3 417.910449 1250.70952 -0.29852 -0.00012475 -0.20452 -8.5469E-05 -0.50303 -0.00021022 417.910463290873 41.792 0.18061 41.791 41.701 41.882 -0.0017929 11 8 2 0 0 0 0.45186 1 22374 22374 18.853 9.3088 1 6604200 60682 8764 40508 41422 70687 70687 0.0941926858304214 SPRPDRALVQL 11 Unmodified _SPRPDRALVQL_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526985.1_1_8:145059868-145060277:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.9109497070312 3 417.910449 1250.70952 0.78633 0.00032861 -1.5002 -0.00062696 -0.71391 -0.00029835 418.2443246557403 46.31 0.29524 41.229 41.064 41.359 -5.0805 29 19 2 0 0 0 0.55668 1 28534 28534 13.535 3.3844 1 23487000 60683 8764 40508 41422 70688 70688 0.0941926858304214 SPRPDRALVQL 11 Unmodified _SPRPDRALVQL_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000526985.1_1_8:145059868-145060277:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MSMS AL20221201_MKP_PDAC_01 4 417.9107360839844 3 417.910449 1250.70952 NaN NaN NaN NaN NaN NaN NaN 46.445 1 41.365 40.865 41.865 -5.0805 0 0 0 0.80559 1 28685 28685 11.798 2.5545 1 60684 8764 40508 41422 70689 70689 0.0941926858304214 SPRPGPSSL 9 Unmodified _SPRPGPSSL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.2432250976562 2 449.243067 896.47158 -0.1389 -6.2399E-05 0.5288 0.00023756 0.38991 0.00017516 449.2435327795729 25.316 0.71428 25.316 25.147 25.862 0 51 34 3 0 0 0 0.0099157 1 12963 12963 80.676 34.655 1 5045800 60685 16188 40509 41423 70690 70690 0.019203277206202074 SPRPGPSSL 9 Unmodified _SPRPGPSSL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 449.2434387207031 2 449.243067 896.47158 NaN NaN NaN NaN NaN NaN NaN 28.315 1 25.167 24.667 25.667 -3.1482 0 0 0 0.01832 1 15782 15782 80.676 27.1 1 60686 16188 40509 41423 70691 70691 0.019203277206202074 SPRPGPSSL 9 Unmodified _SPRPGPSSL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 449.2440490722656 2 449.243067 896.47158 NaN NaN NaN NaN NaN NaN NaN 28.506 1 25.358 24.858 25.858 -3.1482 0 0 0 0.01832 1 15910 15910 80.676 27.1 1 60687 16188 40509 41423 70692 70692 0.019203277206202074 SPRPPAEGF 9 Unmodified _SPRPPAEGF_ 0 0 0 ENSG00000156858|ENST00000300835|PRR14;ENST00000564946.5_1_16:30664247-30666731:+|nuORF ENSG00000156858|ENST00000300835|PRR14 ENSG00000156858|ENST00000300835|PRR14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2431335449219 2 479.243067 956.47158 0.16937 8.117E-05 0.40322 0.00019324 0.5726 0.00027441 479.2430856292668 31.187 0.44657 31.187 30.932 31.379 0 45 21 3 0 0 0 0.037253 1 16284 16284 51.415 16.483 1 2679700 60688 6484 40510 41424 70693 70693 -0.008396722793804656 SPRPPLISV 9 Unmodified _SPRPPLISV_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2926330566406 2 483.292559 964.570566 0.54079 0.00026136 -0.47569 -0.0002299 0.065109 3.1467E-05 483.2923269217532 52.05 0.38994 51.616 51.4 51.789 -0.43367 31 19 2 0 0 0 0.18144 2 28060 28060;28166 24.991 4.5373 1 3359000 60689 749 40511 41425 70694;70695 70694 0.08686350685525213 SPRPPLISV 9 Unmodified _SPRPPLISV_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2933349609375 2 483.292559 964.570566 0.16634 8.0391E-05 0.72203 0.00034895 0.88838 0.00042935 483.2929538654006 51.704 0.41936 51.645 51.416 51.835 -0.058918 51 20 3 0 0 0 0.085319 2 28054 27948;28054 36.506 11.107 1 5843700 60690 749 40511 41425 70696;70697 70697 0.08686350685525213 SPRPPLISV 9 Unmodified _SPRPPLISV_ 0 0 0 ENSG00000053770|ENST00000261558|AP5M1;nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF ENSG00000053770|ENST00000261558|AP5M1 ENSG00000053770|ENST00000261558|AP5M1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2925720214844 2 483.292559 964.570566 1.0314 0.00049845 1.5024 0.00072609 2.5337 0.0012245 483.2936558381589 57.301 0.31228 51.273 51.131 51.443 -6.0275 30 16 2 0 0 0 0.069655 2 36722 36599;36722 40.239 12.61 1 27210000 60691 749 40511 41425 70698;70699 70699 0.08686350685525213 SPRPPNSPSI 10 Unmodified _SPRPPNSPSI_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2824096679688 2 526.28018 1050.54581 -0.048834 -2.57E-05 -0.16979 -8.9359E-05 -0.21863 -0.00011506 526.2800336407951 29.055 0.17922 29.055 28.963 29.142 0 15 8 2 0 0 0 0.03037 1 15031 15031 67.838 16.983 1 1299200 60692 4346 40512 41426 70700 70700 0.022556708121328484 SPRPPNSPSI 10 Unmodified _SPRPPNSPSI_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2800903320312 2 526.28018 1050.54581 0.51408 0.00027055 -0.94075 -0.0004951 -0.42667 -0.00022455 526.2798177427195 29.06 0.32083 28.998 28.786 29.107 -0.062159 19 13 2 0 0 0 0.039874 3 14967 14946;14967;15074 63.227 28.826 1 2771400 60693 4346 40512 41426 70701;70702;70703 70702 0.022556708121328484 SPRPPNSPSI 10 Unmodified _SPRPPNSPSI_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2806396484375 2 526.28018 1050.54581 0.5983 0.00031487 -0.067826 -3.5695E-05 0.53047 0.00027918 526.7814340700445 32.824 0.37626 28.968 28.753 29.129 -3.8562 54 20 4 0 0 0 0.0096273 1 18681 18681 88.364 36.948 1 28718000 60694 4346 40512 41426 70704 70704 0.022556708121328484 SPRPTGSDL 9 Unmodified _SPRPTGSDL_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2395935058594 2 465.237981 928.461409 0.048992 2.2793E-05 1.4803 0.00068869 1.5293 0.00071149 465.23870455365 20.171 0.21819 20.171 20.092 20.31 0 23 14 2 0 0 0 0.085319 1 10117 10117 36.506 3.7205 1 534280 60695 5622 40513 41427 70705 70705 -0.005682800046201919 SPRPTGSDL 9 Unmodified _SPRPTGSDL_ 0 0 0 ENSG00000144589|ENST00000456909|STK11IP;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENST00000473899.1_1_2:220473145-220474007:+|nuORF ENSG00000144589|ENST00000456909|STK11IP ENSG00000144589|ENST00000456909|STK11IP MSMS AL20221201_MKP_PDAC_01 4 465.2377624511719 2 465.237981 928.461409 NaN NaN NaN NaN NaN NaN NaN 22.558 1 19.779 19.279 20.279 -2.7784 0 0 0 0.08368 1 12137 12137 47.594 3.7361 1 60696 5622 40513 41427 70706 70706 -0.005682800046201919 SPRQGASFL 9 Unmodified _SPRQGASFL_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.757080078125 2 481.756341 961.498129 -0.08944 -4.3088E-05 0.8692 0.00041874 0.77976 0.00037565 481.75673139764865 37.244 0.38324 36.973 36.798 37.181 -0.27133 38 15 3 0 0 0 0.013609 2 19526 19526;19627 70.332 20.399 1 13109000 60697 2308 40514 41428 70707;70708 70707 0.015840166119460264 SPRQGNSKNVL 11 Unmodified _SPRQGNSKNVL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5552978515625 3 400.554554 1198.64183 0.28252 0.00011317 0.55062 0.00022055 0.83314 0.00033372 400.5548262904382 16.562 0.2006 14.005 13.907 14.107 -2.557 72 29 3 0 0 0 0.12646 1 8554 8554 39.413 19.787 1 6856100 60698 3944 40515 41429 70709 70709 0.050458186522291726 SPRQGNSKNVL 11 Unmodified _SPRQGNSKNVL_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MSMS AL20221201_MKP_PDAC_01 4 600.3290405273438 2 600.328193 1198.64183 NaN NaN NaN NaN NaN NaN NaN 16.569 1 14.012 13.512 14.512 -2.557 0 0 0 0.81659 1 8593 8593 13.519 8.2218 1 60699 3944 40515 41429 70710 70710 0.050458186522291726 SPRQNKYSVLL 11 Unmodified _SPRQNKYSVLL_ 0 0 0 ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1 ENST00000466152.5_1_20:49557422-49575060:-|nuORF ENST00000466152.5_1_20:49557422-49575060:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.58203125 3 435.582221 1303.72483 0.49167 0.00021416 -0.14641 -6.3772E-05 0.34526 0.00015039 435.58221597050317 39.552 0.28837 39.564 39.427 39.716 0.011452 34 13 3 0 0 0 0.33612 1 21047 21047 25.155 19.287 1 5447900 60700 249 40516 41430 70711 70711 0.08512135380237851 SPRQNKYSVLL 11 Unmodified _SPRQNKYSVLL_ 0 0 0 ENST00000466152.5_1_20:49557422-49575060:-|nuORF;ENSG00000000419|ENST00000371588|DPM1 ENST00000466152.5_1_20:49557422-49575060:-|nuORF ENST00000466152.5_1_20:49557422-49575060:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 435.5818176269531 3 435.582221 1303.72483 NaN NaN NaN NaN NaN NaN NaN 43.135 1 38.371 37.871 38.871 -4.7648 0 0 0 0.42926 1 26156 26156 22.109 9.8813 1 60701 249 40516 41430 70712 70712 0.08512135380237851 SPRQPLAILA 10 Unmodified _SPRQPLAILA_ 0 0 0 ENST00000476438.1_1_16:632096-633032:+|nuORF ENST00000476438.1_1_16:632096-633032:+|nuORF ENST00000476438.1_1_16:632096-633032:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7985229492188 2 533.324391 1064.63423 0.49897 0.00026611 -0.13551 -7.2272E-05 0.36345 0.00019384 533.3241225035331 58.887 0.32089 58.827 58.643 58.964 -0.060719 29 15 3 0 0 0 0.23057 1 32079 32079 13.042 5.1323 1 2876000 60702 13983 40517 41431 70713 70713 0.1044971112262374 SPRQVPSH 8 Unmodified _SPRQVPSH_ 0 0 0 REV__ENST00000320849.8_1_20:34844201-34844534:+|nuORF REV__ENST00000320849.8_1_20:34844201-34844534:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 454.2415466308594 2 454.240858 906.467164 NaN NaN NaN NaN NaN NaN NaN 28.198 1 25.05 24.55 25.55 -3.1482 0 0 0 0.83301 1 15704 15704 21.747 0 1 + 60703 25506 40518 41432 70714 70714 0.010188632977133238 SPRRPAPPS 9 Unmodified _SPRRPAPPS_ 0 0 0 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 REV__nc|ENSG00000196689|Q8NER1-3|TRPV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 965.5406494140625 1 964.532289 963.525013 0.39445 0.00038046 3.1236 0.0030128 3.5181 0.0033933 964.5351656106685 86.103 0.32347 85.6 85.468 85.791 -0.50318 19 12 2 0 0 0 0.59218 1 47176 47176 1.8442 0 1 542820 + 60704 29003 40519 41433 70715 70715 0.041791252231291764 SPRRPGPG 8 Unmodified _SPRRPGPG_ 0 0 0 REV__nc|ENSG00000188522|A6ND36-2|FAM83G REV__nc|ENSG00000188522|A6ND36-2|FAM83G MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2314453125 2 412.230294 822.446034 1.3154 0.00054223 -0.21725 -8.9558E-05 1.0981 0.00045267 412.2301100239454 20.176 0.44793 17.52 17.294 17.742 -2.6564 82 29 3 0 0 0 0.75262 1 10656 10656 12.532 3.1841 1 69063000 + 60705 23714 40520 41434 70716 70716 0.027708979888643626 SPRRPPPPSL 10 Unmodified _SPRRPPPPSL_ 0 0 0 ENST00000564233.5_1_16:30020315-30023028:-|nuORF ENST00000564233.5_1_16:30020315-30023028:-|nuORF ENST00000564233.5_1_16:30020315-30023028:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.548828125 3 368.548852 1102.62473 NaN NaN NaN NaN NaN NaN NaN 16.113 1 13.556 13.056 14.056 -2.557 0 0 0 0.89532 1 8325 8325 7.4771 2.9482 1 60706 15380 40521 41435 70717 70717 0.07751942837080605 SPRRQERW 8 Unmodified _SPRRQERW_ 0 0 0 REV__nc|ENSG00000167861|Q8IV36-3|HID1 REV__nc|ENSG00000167861|Q8IV36-3|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7969360351562 2 557.796863 1113.57917 -0.24509 -0.00013671 -1.0249 -0.00057168 -1.27 -0.00070838 557.796169928169 16.734 0.04492 16.734 16.695 16.74 0 13 9 2 0 0 0 0.80676 1 8180 8180 2.5775 0.51773 1 563660 + 60707 22257 40522 41436 70718 70718 0.026927173747026245 SPRSGYFAL 9 Unmodified _SPRSGYFAL_ 0 0 0 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 ENSG00000011260|ENST00000225298|UTP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2590942382812 2 499.258717 996.50288 0.8919 0.00044529 -0.36253 -0.000181 0.52937 0.00026429 499.25850510810136 55.791 0.38459 49.87 49.621 50.006 -5.9211 39 22 2 0 0 0 0.2546 1 35606 35606 19.362 2.249 1 20680000 60708 440 40523 41437 70719 70719 0.004489007547249457 SPRSPSSTTL 10 Unmodified _SPRSPSSTTL_ 0 0 0 ENST00000489678.1_1_14:74762662-74763162:-|nuORF ENST00000489678.1_1_14:74762662-74763162:-|nuORF ENST00000489678.1_1_14:74762662-74763162:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.76953125 2 516.769645 1031.52474 NaN NaN NaN NaN NaN NaN NaN 21.873 1 21.873 21.373 22.373 0 0 0 0 0.90788 1 11102 11102 7.609 1.2548 1 60709 14243 40524 41438 70720 70720 0.010236607126216768 SPRSSDLVKL 10 Unmodified _SPRSSDLVKL_ 0 0 0 nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8800964355469 3 367.880267 1100.61897 -0.57675 -0.00021217 1.2017 0.00044206 0.6249 0.00022989 367.8805361890633 34.764 0.24583 34.764 34.636 34.882 0 22 12 3 0 0 0 0.48629 1 18324 18324 17.049 6.2491 1 2120000 60710 5520 40525 41439 70721 70721 0.07268799534767822 SPRSSDLVKL 10 Unmodified _SPRSSDLVKL_ 0 0 0 nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 nc|ENSG00000143493|Q9NVH2-4|INTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8801879882812 3 367.880267 1100.61897 -0.3121 -0.00011482 0.83726 0.00030801 0.52516 0.0001932 367.88051008702206 34.843 0.18079 34.652 34.541 34.722 -0.19131 12 7 2 0 0 0 0.19105 1 18220 18220 34.79 12.682 1 2714300 60711 5520 40525 41439 70722 70722 0.07268799534767822 SPRSSLNNSL 10 Unmodified _SPRSSLNNSL_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.780517578125 2 537.780544 1073.54654 -0.31181 -0.00016769 -0.51185 -0.00027527 -0.82366 -0.00044295 537.7801917989391 26.115 0.22205 26.115 25.986 26.208 0 19 12 2 0 0 0 0.14944 1 13396 13396 32.037 8.0169 1 2713100 60712 10161 40526 41440 70723 70723 0.012704654611980004 SPRSSTVHIL 10 Unmodified _SPRSSTVHIL_ 0 0 0 ENSG00000116830|ENST00000369466|TTF2 ENSG00000116830|ENST00000369466|TTF2 ENSG00000116830|ENST00000369466|TTF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.2094116210938 3 366.208495 1095.60366 0.37978 0.00013908 1.3617 0.00049868 1.7415 0.00063776 366.2090414228346 30.904 0.19952 30.802 30.717 30.917 -0.10269 12 7 2 0 0 0 0.60623 1 16057 16057 6.1918 0.78914 1 1258300 60713 3259 40527 41441 70724 70724 0.059679327375761204 SPRSSTVHIL 10 Unmodified _SPRSSTVHIL_ 0 0 0 ENSG00000116830|ENST00000369466|TTF2 ENSG00000116830|ENST00000369466|TTF2 ENSG00000116830|ENST00000369466|TTF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2085266113281 3 366.208495 1095.60366 2.0606 0.00075461 -1.5349 -0.00056209 0.52571 0.00019252 366.20767321803385 33.968 0.41844 29.982 29.731 30.15 -3.9853 39 22 2 0 0 0 0.40136 1 19522 19522 14.218 0 1 8090100 60714 3259 40527 41441 70725 70725 0.059679327375761204 SPRTPPQRF 9 Unmodified _SPRTPPQRF_ 0 0 0 ENSG00000215114|ENST00000399598|UBXN2B ENSG00000215114|ENST00000399598|UBXN2B ENSG00000215114|ENST00000399598|UBXN2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5343322753906 3 362.533202 1084.57778 1.7518 0.00063508 1.3908 0.00050421 3.1426 0.0011393 362.53378333135566 21.768 0.35987 19.033 18.844 19.204 -2.7348 41 19 4 0 0 0 0.085319 1 11716 11716 28.234 16.716 1 6837600 60715 10520 40528 41442 70726 70726 0.03887083285940207 SPRTPVSPVKF 11 Unmodified _SPRTPVSPVKF_ 0 0 0 nc|ENSG00000108443|P23443-5|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5677185058594 3 405.567912 1213.68191 0.089327 3.6228E-05 0.37275 0.00015118 0.46208 0.00018741 405.5678652530296 39.575 0.26583 39.586 39.489 39.755 0.011452 28 12 3 0 0 0 0.010729 1 21096 21096 62.894 55.857 1 3153100 60716 2570 40529 41443 70727 70727 0.08361365322775782 SPRTPVSPVKF 11 Unmodified _SPRTPVSPVKF_ 0 0 0 nc|ENSG00000108443|P23443-5|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 nc|ENSG00000108443|P23443-5|RPS6KB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.568115234375 3 405.567912 1213.68191 0.65335 0.00026498 -0.19113 -7.7518E-05 0.46221 0.00018746 405.9019061490425 44.019 0.22647 39.254 39.139 39.366 -4.7648 22 14 2 0 0 0 0.056311 1 26765 26765 34.79 28.556 1 18108000 60717 2570 40529 41443 70728 70728 0.08361365322775782 SPRTRTGDVL 10 Unmodified _SPRTRTGDVL_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20;nc|ENSG00000064703|Q9UHI6-2|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8721313476562 3 367.871883 1100.59382 1.8228 0.00067055 -0.87558 -0.0003221 0.94719 0.00034844 367.87151181275686 21.505 0.35525 18.77 18.62 18.976 -2.7348 69 30 3 0 0 0 0.5802 1 11500 11500 12.175 7.2777 1 10304000 60718 883 40530 41444 70729 70729 0.047547447321903746 SPRTRTGDVL 10 Unmodified _SPRTRTGDVL_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20;nc|ENSG00000064703|Q9UHI6-2|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3035278320312 2 551.304187 1100.59382 1.1779 0.00064938 -1.7724 -0.00097715 -0.59452 -0.00032776 551.3030297738665 21.508 0.24788 18.773 18.669 18.917 -2.7348 28 19 2 0 0 0 0.34435 1 11523 11523 17.113 3.2068 1 2082400 60719 883 40530 41444 70730 70730 0.047547447321903746 SPRVGKIVM 9 Unmodified _SPRVGKIVM_ 0 0 0 ENSG00000132746|ENST00000673966|ALDH3B2;ENST00000534425.5_1_11:67431830-67435009:-|nuORF;nc|ENSG00000006534|P43353-2|ALDH3B1;ENSG00000006534|ENST00000342456|ALDH3B1 ENSG00000132746|ENST00000673966|ALDH3B2 ENSG00000132746|ENST00000673966|ALDH3B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7944946289062 2 493.794412 985.574271 0.79581 0.00039297 -0.52241 -0.00025796 0.27341 0.00013501 493.7942930694631 34.509 0.43877 30.414 30.16 30.599 -4.0951 49 25 3 0 0 0 0.10247 2 19857 19857;19977 32.786 6.4444 1 25817000 60720 4446 40531 41445 70731;70732 70731 0.08090697187731166 SPRVHSLIL 9 Unmodified _SPRVHSLIL_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MSMS AL20221201_MKP_PDAC_01 4 511.3106689453125 2 511.311284 1020.60801 NaN NaN NaN NaN NaN NaN NaN 45.461 1 40.506 40.006 41.006 -4.9549 0 0 0 0.16551 1 27914 27914 34.932 8.0484 1 60721 1559 40532 41446 70733 70733 0.09853441951145214 SPRVPLSAY 9 Unmodified _SPRVPLSAY_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2737426757812 2 495.274367 988.53418 -0.14886 -7.3725E-05 -0.62121 -0.00030767 -0.77007 -0.00038139 495.27412176074426 41.872 0.2496 41.566 41.433 41.682 -0.30682 24 11 3 0 0 0 0.017075 1 22202 22202 66.457 30.33 1 12552000 60722 7692 40533 41447 70734 70734 0.03945473788792242 SPRVPLSAY 9 Unmodified _SPRVPLSAY_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2757568359375 2 495.274367 988.53418 0.43635 0.00021612 -0.46059 -0.00022812 -0.024233 -1.2002E-05 495.2741947931778 46.607 0.29366 41.526 41.345 41.639 -5.0805 76 56 2 0 0 0 0.037253 1 28893 28893 51.415 24.532 1 58153000 60723 7692 40533 41447 70735 70735 0.03945473788792242 SPRVPNSSV 9 Unmodified _SPRVPNSSV_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7537536621094 2 471.753798 941.493044 NaN NaN NaN NaN NaN NaN NaN 21.793 1 21.793 21.293 22.293 0 0 0 0 0.58748 1 11054 11054 13.042 2.9685 1 60724 3160 40534 41448 70736 70736 0.01995712749339873 SPRVPVIFVVN 11 Unmodified _SPRVPVIFVVN_ 0 0 0 nc|ENSG00000206561|Q9Y215-3|COLQ;nc|ENSG00000206561|Q9Y215-2|COLQ;nc|ENSG00000206561|Q9Y215-5|COLQ;nc|ENSG00000206561|Q9Y215-4|COLQ;ENSG00000206561|ENST00000383788|COLQ nc|ENSG00000206561|Q9Y215-3|COLQ nc|ENSG00000206561|Q9Y215-3|COLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5806884765625 3 409.580041 1225.71829 0.053781 2.2028E-05 0.76945 0.00031515 0.82323 0.00033718 409.58028621244205 53.052 0.21706 52.989 52.863 53.08 -0.063423 17 10 2 0 0 0 0.6704 1 28745 28745 7.0341 2.628 1 2025300 60725 10403 40535 41449 70737 70737 0.11446242219517444 SPRVQFQSL 9 Unmodified _SPRVQFQSL_ 0 0 0 nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 nc|ENSG00000197343|Q8N720-2|ZNF655;ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.793701171875 2 531.290548 1060.56654 -0.14071 -7.4757E-05 2.1699 0.0011529 2.0292 0.0010781 531.2911382426266 45.12 0.086102 44.796 44.765 44.851 -0.32425 6 5 2 0 0 0 0.028502 1 24098 24098 57.722 27.881 1 18781000 60726 9943;16485 40536 41450 70738 70738 0.03868261191814781 SPRVQFQSL 9 Unmodified _SPRVQFQSL_ 0 0 0 nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 nc|ENSG00000197343|Q8N720-2|ZNF655;ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7911376953125 2 531.290548 1060.56654 -0.082417 -4.3787E-05 0.39006 0.00020724 0.30765 0.00016345 531.2908773635621 44.865 0.21705 44.843 44.718 44.935 -0.022068 25 10 3 0 0 0 0.01958 1 24046 24046 63.961 18.261 1 20329000 60727 9943;16485 40536 41450 70739 70739 0.03868261191814781 SPRVQFQSL 9 Unmodified _SPRVQFQSL_ 0 0 0 nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655 nc|ENSG00000197343|Q8N720-2|ZNF655;ENSG00000197343|ENST00000252713|ZNF655 ENSG00000197343|ENST00000252713|ZNF655 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2913208007812 2 531.290548 1060.56654 1.0096 0.00053637 0.094775 5.0353E-05 1.1043 0.00058673 531.2904408385602 50.061 0.48933 44.522 44.236 44.725 -5.5391 82 31 3 0 0 0 0.040683 2 31402 31270;31402 49.554 14.84 1 128620000 60728 9943;16485 40536 41450 70740;70741 70741 0.03868261191814781 SPRVTGRLL 9 Unmodified _SPRVTGRLL_ 0 0 0 ENSG00000105447|ENST00000253237|GRWD1 ENSG00000105447|ENST00000253237|GRWD1 ENSG00000105447|ENST00000253237|GRWD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8096618652344 2 499.808908 997.603263 1.2696 0.00063458 0.054673 2.7326E-05 1.3243 0.00066191 499.80909897653527 34.281 0.56898 30.296 29.842 30.411 -3.9853 59 31 2 0 0 0 0.047788 2 19671 19671;19808 45.7 9.5328 1 18749000 60729 2324 40537 41451 70742;70743 70742 0.10436557808395719 SPRVTVAQL 9 Unmodified _SPRVTVAQL_ 0 0 0 ENST00000484500.5_1_3:125642769-125647435:+|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000484500.5_1_3:125642769-125647435:+|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000484500.5_1_3:125642769-125647435:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7881774902344 2 485.787641 969.56073 0.71639 0.00034802 -0.091286 -4.4346E-05 0.62511 0.00030367 485.78759530738375 40.717 0.30811 40.414 40.254 40.563 -0.30304 39 14 4 0 0 0 0.14594 1 21591 21591 28.495 0.86571 1 16045000 60730 3398;13633;14779 40538 41452 70744 70744 0.07473162680150836 SPRVTVAQL 9 Unmodified _SPRVTVAQL_ 0 0 0 ENST00000484500.5_1_3:125642769-125647435:+|nuORF;nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT;ENSG00000186523|ENST00000448228|FAM86B1;ENSG00000145002|ENST00000262365|FAM86B2;ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000484500.5_1_3:125642769-125647435:+|nuORF;ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000524571.6_1_8:12043687-12049316:-|nuORF ENST00000484500.5_1_3:125642769-125647435:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7868957519531 2 485.787641 969.56073 0.42237 0.00020518 -2.1282 -0.0010338 -1.7058 -0.00082866 485.78779771836963 45.294 0.67345 40.339 39.995 40.669 -4.9549 134 45 5 0 0 0 0.01958 1 27690 27690 63.961 16.366 1 86016000 60731 3398;13633;14779 40538 41452 70745 70745 0.07473162680150836 SPRVVGKQK 9 Unmodified _SPRVVGKQK_ 0 0 0 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 REV__nc|ENSG00000144711|Q6DN90-2|IQSEC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8092651367188 2 499.808908 997.603263 -0.069205 -3.4589E-05 0.58243 0.0002911 0.51323 0.00025652 499.80913050036145 30.574 0.23605 30.604 30.477 30.713 0.030104 18 10 2 0 0 0 0.55144 1 15969 15969 4.3292 0.73274 1 1342500 + 60732 20727 40539 41453 70746 70746 0.1043655780838435 SPRVVSTSL 9 Unmodified _SPRVVSTSL_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2720947265625 2 473.271824 944.529095 -0.68718 -0.00032522 -0.74339 -0.00035183 -1.4306 -0.00067705 473.2720353909054 32.871 0.19624 32.871 32.772 32.968 0 16 9 3 0 0 0 0.069655 1 17224 17224 40.239 0.28188 1 1915000 60733 3759 40540 41454 70747 70747 0.05461169926195453 SPRVVSTSL 9 Unmodified _SPRVVSTSL_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2709350585938 2 473.271824 944.529095 -0.15378 -7.2778E-05 0.029331 1.3881E-05 -0.12445 -5.8896E-05 473.27170444603973 32.934 0.29491 32.775 32.664 32.959 -0.15918 19 11 2 0 0 0 0.040683 1 17168 17168 49.554 9.597 1 3381200 60734 3759 40540 41454 70748 70748 0.05461169926195453 SPRVVSTSL 9 Unmodified _SPRVVSTSL_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.272216796875 2 473.271824 944.529095 1.2005 0.00056818 -0.70869 -0.0003354 0.49185 0.00023278 473.27145620955605 37.483 0.38051 33.199 32.991 33.371 -4.2835 56 22 3 0 0 0 0.033587 1 21932 21932 53.404 5.6553 1 31182000 60735 3759 40540 41454 70749 70749 0.05461169926195453 SPRWLVMI 8 Unmodified _SPRWLVMI_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1002.063781738281 1 1001.56008 1000.55281 -0.03383 -3.3883E-05 1.0786 0.0010803 1.0448 0.0010464 1001.5626751331214 24.005 0.31754 24.003 23.843 24.161 -0.0016766 22 17 2 0 0 0 8.7369 1 12208 12208 0.69038 0 1 9236600 + 60736 18330 40541 41455 70750 70750 0.05255312159022196 SPRYIFTML 9 Oxidation (M) _SPRYIFTM(Oxidation (M))L_ SPRYIFTM(1)L SPRYIFTM(40)L 0 0 1 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.2982177734375 2 572.296985 1142.57942 0.45352 0.00025955 1.2726 0.00072828 1.7261 0.00098783 572.2972566490718 63.342 0.41033 63.32 63.069 63.479 -0.021618 69 20 5 0 0 0 0.069655 1 34622 34622 40.239 12.066 1 56764000 60737 4347 40542 41456 70751 70751 788 0.013829562596811229 SPRYIFTML 9 Unmodified _SPRYIFTML_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.300048828125 2 564.299527 1126.5845 0.51234 0.00028912 0.041374 2.3347E-05 0.55372 0.00031246 564.2998143738577 77.587 0.27951 77.637 77.441 77.721 0.05011 25 11 3 0 0 0 0.036857 1 42806 42806 51.63 20.993 1 5222800 60738 4347 40542 41457 70752 70752 0.02627260122289954 SPRYIFTML 9 Unmodified _SPRYIFTML_ 0 0 0 ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B ENSG00000131747|ENST00000423485|TOP2A ENSG00000131747|ENST00000423485|TOP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2994384765625 2 564.299527 1126.5845 1.3365 0.00075418 -0.85941 -0.00048496 0.47709 0.00026922 564.2990934046085 96.988 0.40239 90.813 90.557 90.96 -6.1757 59 23 4 0 0 0 0.01958 2 64329 64205;64329 63.961 27.833 1 110610000 60739 4347 40542 41457 70753;70754 70754 0.02627260122289954 SPSAAHFITRL 11 Unmodified _SPSAAHFITRL_ 0 0 0 ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1 ENST00000530122.1_1_20:57266543-57280604:+|nuORF ENST00000530122.1_1_20:57266543-57280604:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.555908203125 3 400.555895 1198.64586 0.057022 2.284E-05 0.096766 3.876E-05 0.15379 6.1601E-05 400.5560856430557 45.847 0.33593 45.819 45.661 45.997 -0.028011 42 15 4 0 0 0 0.30838 2 24705 24603;24705 26.346 11.94 1 14674000 60740 10531 40543 41458 70755;70756 70756 0.054479081459248846 SPSAAHFITRL 11 Unmodified _SPSAAHFITRL_ 0 0 0 ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1 ENST00000530122.1_1_20:57266543-57280604:+|nuORF ENST00000530122.1_1_20:57266543-57280604:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3296508789062 2 600.330205 1198.64586 0.10527 6.3196E-05 0.20954 0.00012579 0.31481 0.00018899 600.3304146109958 45.803 0.3119 45.775 45.661 45.973 -0.028011 34 14 3 0 0 0 9.665799999999999E-21 1 24616 24616 150.18 92.455 1 7437600 60741 10531 40543 41458 70757 70757 0.054479081459248846 SPSAAHFITRL 11 Unmodified _SPSAAHFITRL_ 0 0 0 ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1 ENST00000530122.1_1_20:57266543-57280604:+|nuORF ENST00000530122.1_1_20:57266543-57280604:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5551452636719 3 400.555895 1198.64586 1.1822 0.00047355 -0.081396 -3.2604E-05 1.1008 0.00044095 400.5557260701301 50.549 0.36046 45.01 44.775 45.136 -5.5391 51 22 3 0 0 0 0.16739 2 31746 31610;31746 34.674 20.503 1 34769000 60742 10531 40543 41458 70758;70759 70759 0.054479081459248846 SPSAVVVEM 9 Oxidation (M) _SPSAVVVEM(Oxidation (M))_ SPSAVVVEM(1) SPSAVVVEM(51) 0 0 1 ENSG00000156463|ENST00000359120|SH3RF2;nc|ENSG00000156463|Q8TEC5-3|SH3RF2;nc|ENSG00000156463|Q8TEC5-2|SH3RF2;ENST00000511705.1_1_5:145435703-145442261:+|nuORF ENSG00000156463|ENST00000359120|SH3RF2 ENSG00000156463|ENST00000359120|SH3RF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7315673828125 2 467.731143 933.447733 -0.39685 -0.00018562 0.57799 0.00027035 0.18115 8.4728E-05 467.73127053496063 32.115 0.24356 32.115 31.94 32.184 0 16 11 2 0 0 0 0.038285 1 16719 16719 50.855 26.181 1 896860 60743 6454 40544 41459 70760 70760 1132 -0.0216527382805225 SPSCFWLTP 9 Unmodified _SPSCFWLTP_ 0 0 0 REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF REV__ENST00000476663.1_1_6:32139072-32143632:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7772216796875 2 519.241678 1036.4688 0.57775 0.00029999 -0.1646 -8.5466E-05 0.41315 0.00021453 519.241477544761 47.39 0.4465 47.037 46.798 47.244 -0.3526 54 21 3 0 0 0 0.20727 1 25311 25311 7.9102 7.1165 1 13425000 + 60744 24158 40545 41460 70761 70761 -0.04797263728573853 SPSDFSVSL 9 Unmodified _SPSDFSVSL_ 0 0 0 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 ENSG00000071051|ENST00000233154|NCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4476928710938 1 938.446553 937.439277 0.074454 6.9871E-05 0.71701 0.00067288 0.79147 0.00074275 938.4469857680693 62.838 0.23997 62.838 62.655 62.895 0 12 9 2 0 0 0 0.042911 1 35014 35014 48.346 26.599 1 698940 60745 1048 40546 41461 70762 70762 -0.03194504473037796 SPSDLDLVM 9 Oxidation (M) _SPSDLDLVM(Oxidation (M))_ SPSDLDLVM(1) SPSDLDLVM(44) 0 0 1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7330017089844 2 496.733883 991.453213 0.54811 0.00027227 0.27022 0.00013423 0.81834 0.00040649 496.73368844382117 49.893 0.21302 49.893 49.773 49.986 0 22 9 3 0 0 0 0.052168 1 27450 27450 44.407 15.92 1 2279000 60746 7341 40547 41462 70763 70763 1267 -0.04285595036253653 SPSDLDLVM 9 Oxidation (M) _SPSDLDLVM(Oxidation (M))_ SPSDLDLVM(1) SPSDLDLVM(78) 0 0 1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 nc|ENSG00000165475|Q9Y2S2-2|CRYL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.4594116210938 1 992.460489 991.453213 0.30544 0.00030314 -1.3576 -0.0013473 -1.0521 -0.0010442 992.4597196208509 49.894 0.15323 49.894 49.793 49.946 0 10 6 2 0 0 0 0.010877 1 27471 27471 77.984 35.89 1 808330 60747 7341 40547 41462 70764 70764 1267 -0.04285595036253653 SPSDLPLSTY 10 Unmodified _SPSDLPLSTY_ 0 0 0 REV__ENSG00000161911|ENST00000426005|TREML1 REV__ENSG00000161911|ENST00000426005|TREML1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.746337890625 2 540.266404 1078.51826 0.97571 0.00052714 0.40449 0.00021853 1.3802 0.00074568 540.2671031263716 55.416 0.58368 49.495 49.256 49.84 -5.9211 60 35 2 0 0 0 0.21571 1 35399 35399 25.399 11.493 1 22206000 + 60748 21611 40548 41463 70765 70765 -0.017862772387616133 SPSDPAFAY 9 Unmodified _SPSDPAFAY_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522774.1_1_8:37720415-37728147:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000523182.5_1_8:37720415-37730726:-|nuORF nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4185180664062 1 954.420339 953.413062 -0.29134 -0.00027806 -0.69933 -0.00066745 -0.99066 -0.00094551 954.4196768234026 46.936 0.3041 46.936 46.799 47.103 0 22 14 2 0 0 0 0.0077963 2 25651 25651;25762 109.63 65.222 1 4539500 60749 6474 40549 41464 70766;70767 70766 -0.06550773644528363 SPSDPAFAY 9 Unmodified _SPSDPAFAY_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522774.1_1_8:37720415-37728147:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000523182.5_1_8:37720415-37730726:-|nuORF nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7141723632812 2 477.713808 953.413062 0.15281 7.3001E-05 -0.49588 -0.00023689 -0.34306 -0.00016389 477.7135794709273 46.912 0.29957 46.912 46.762 47.062 0 20 14 2 0 0 0 0.038285 1 25679 25679 50.855 31.416 1 3481200 60750 6474 40549 41464 70768 70768 -0.06550773644528363 SPSDPAFAY 9 Unmodified _SPSDPAFAY_ 0 0 0 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1;ENST00000522774.1_1_8:37720415-37728147:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENST00000523182.5_1_8:37720415-37730726:-|nuORF nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.4188842773438 1 954.420339 953.413062 1.067 0.0010183 -0.3857 -0.00036812 0.68129 0.00065023 954.4195790763159 54.027 0.31086 48.162 47.991 48.302 -5.8653 27 17 2 0 0 0 0.0077963 2 34276 34144;34276 109.63 73.585 1 10019000 60751 6474 40549 41464 70769;70770 70770 -0.06550773644528363 SPSDRPLSL 9 Unmodified _SPSDRPLSL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.26220703125 2 486.261456 970.50836 0.34547 0.00016799 0.9609 0.00046725 1.3064 0.00063524 486.2617629758726 39.311 0.37349 39.311 39.096 39.469 0 48 17 4 0 0 0 0.012228 1 21048 21048 74.2 18.697 1 16599000 60752 583 40550 41465 70771 70771 0.021925795465335796 SPSDRPLSL 9 Unmodified _SPSDRPLSL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2633056640625 2 486.261456 970.50836 0.55505 0.0002699 2.7187 0.001322 3.2738 0.0015919 486.2631458791464 44.066 0.46255 39.302 39.05 39.512 -4.7648 65 31 3 0 0 0 0.0099157 2 26755 26755;26890 80.676 23.205 1 30305000 60753 583 40550 41465 70772;70773 70772 0.021925795465335796 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 984.4668579101562 1 984.467289 983.460012 0.037357 3.6777E-05 -0.04036 -3.9733E-05 -0.0030024 -2.9558E-06 984.4670539117732 62.9 0.491 62.9 62.655 63.146 0 75 20 5 0 0 0 0.0036753 3 35091 34986;35091;35191 123.1 69.521 1 84098000 60754 8367 40551 41466 70774;70775;70776 70775 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7372131347656 2 492.737283 983.460012 0.14283 7.0377E-05 0.34163 0.00016833 0.48446 0.00023871 492.7373466695615 62.908 0.46626 62.908 62.655 63.122 0 72 19 5 0 0 0 0.023164 3 35106 35002;35106;35210 60.39 31.903 1 73028000 60755 8367 40551 41466 70777;70778;70779 70778 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 984.467529296875 1 984.467289 983.460012 0.19055 0.00018759 0.2748 0.00027053 0.46535 0.00045812 984.4674462148582 63.467 0.4624 62.981 62.75 63.212 -0.48617 64 20 4 0 0 0 0.0036753 3 34613 34518;34613;34713 123.1 69.521 1 49690000 60756 8367 40551 41466 70780;70781;70782 70781 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.737548828125 2 492.737283 983.460012 0.47806 0.00023556 0.37915 0.00018682 0.85722 0.00042238 492.73743055832716 63.487 0.44188 63.001 62.729 63.171 -0.48617 62 19 4 0 0 0 0.010877 2 34665 34566;34665 77.984 45.679 1 24257000 60757 8367 40551 41466 70783;70784 70784 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 984.4674072265625 1 984.467289 983.460012 0.64014 0.0006302 0.38627 0.00038027 1.0264 0.0010105 984.4674575221096 63.081 0.25667 63.06 62.908 63.165 -0.021614 22 12 2 0 0 0 0.010877 1 34450 34450 77.984 38.027 1 3993900 60758 8367 40551 41466 70785 70785 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.4676513671875 1 984.467289 983.460012 1.0119 0.00099621 -0.095437 -9.3955E-05 0.91649 0.00090226 984.4668012976862 70.571 0.60857 64.395 64.118 64.726 -6.1757 91 32 3 0 0 0 0.0036753 4 46088 45961;46088;46211;46338 123.1 69.521 1 292910000 60759 8367 40551 41466 70786;70787;70788;70789 70787 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7376098632812 2 492.737283 983.460012 0.98899 0.00048731 0.081288 4.0054E-05 1.0703 0.00052737 492.73716841360726 70.609 0.60857 64.433 64.118 64.726 -6.1757 86 32 3 0 0 0 0.013472 3 45991 45991;46115;46238 70.716 36.613 1 279350000 60760 8367 40551 41466 70790;70791;70792 70790 -0.03237914093381278 SPSDVFIGY 9 Unmodified _SPSDVFIGY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.737283 983.460012 0.57867 0.00028513 0.60534 0.00029827 1.184 0.00058341 492.7374078053919 63.054 0.25667 63.033 62.908 63.165 -0.021614 0.052321 0.00019818 NaN 77.984 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2919000 60761 8367 40551 41466 -0.03237914093381278 SPSEATESF 9 Unmodified _SPSEATESF_ 0 0 0 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.70654296875 2 477.70618 953.397806 0.28758 0.00013738 1.0078 0.00048145 1.2954 0.00061883 477.70611549367646 31.322 0.28869 31.322 31.152 31.441 0 29 13 3 0 0 0 0.016184 1 16264 16264 67.344 40.46 1 1900100 60762 10469 40552 41467 70793 70793 -0.08075685232358865 SPSELMLTL 9 Oxidation (M) _SPSELM(Oxidation (M))LTL_ SPSELM(1)LTL SPSELM(42)LTL 0 0 1 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7602233886719 2 503.759901 1005.50525 NaN NaN NaN NaN NaN NaN NaN 71.113 1 71.113 70.613 71.613 0 0 0 0 0.10545 1 39615 39615 42.095 18.946 1 60763 9153 40553 41468 70794 70794 1525 0.0027156837751363128 SPSELMLTL 9 Unmodified _SPSELMLTL_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.2940673828125 2 495.762443 989.510333 1.0901 0.00054042 -0.47558 -0.00023577 0.61449 0.00030464 495.7622097144643 89.929 0.3199 83.753 83.615 83.934 -6.1757 27 17 2 0 0 0 0.039788 1 59321 59321 57.471 30.588 1 6986700 60764 9153 40553 41469 70795 70795 0.015158722401224622 SPSEWQMAY 9 Oxidation (M) _SPSEWQM(Oxidation (M))AY_ SPSEWQM(1)AY SPSEWQM(71)AY 0 0 1 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7280883789062 2 557.729132 1113.44371 0.7092 0.00039554 -0.86565 -0.0004828 -0.15645 -8.7257E-05 557.7288178929185 42.391 0.26928 42.391 42.199 42.468 0 42 12 4 0 0 0 0.013323 3 22879 22870;22879;22988 71.134 50.68 1 23205000 60765 7296 40554 41470 70796;70797;70798 70797 1262 -0.10847363321772718 SPSEWQMAY 9 Oxidation (M) _SPSEWQM(Oxidation (M))AY_ SPSEWQM(1)AY SPSEWQM(110)AY 0 0 1 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7294921875 2 557.729132 1113.44371 0.84464 0.00047108 0.13097 7.3047E-05 0.97561 0.00054413 557.7292528326312 48.84 0.37856 43.444 43.24 43.619 -5.3961 26 22 2 0 0 0 0.0083938 1 30432 30432 108 82.598 1 27687000 60766 7296 40554 41470 70799 70799 1262 -0.10847363321772718 SPSFENAHDEY 11 Unmodified _SPSFENAHDEY_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.2620239257812 2 648.262382 1294.51021 -0.57412 -0.00037218 -0.29597 -0.00019187 -0.87009 -0.00056405 648.2620530765803 30.758 0.26475 30.758 30.607 30.872 0 26 12 3 0 0 0 0.08701 1 15967 15967 43.982 22.445 1 3352900 60767 3102 40555 41471 70800 70800 -0.12526456226169103 SPSFENAHDEY 11 Unmodified _SPSFENAHDEY_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.2625732421875 2 648.262382 1294.51021 0.91639 0.00059406 -0.4527 -0.00029347 0.46369 0.00030059 648.2619003503467 34.98 0.27112 30.885 30.683 30.954 -4.0951 23 15 2 0 0 0 0.018218 1 20258 20258 59.052 26.267 1 5526600 60768 3102 40555 41471 70801 70801 -0.12526456226169103 SPSFEWCHT 9 Unmodified _SPSFEWCHT_ 0 0 0 REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10 REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2247924804688 2 547.224017 1092.43348 0.2918 0.00015968 -0.49479 -0.00027076 -0.20299 -0.00011108 547.2239764168428 77.54 0.52927 77.54 77.265 77.794 0 223 37 7 0 0 0 0.5029 1 43198 43198 7.2892 0.56607 1 90267000 + 60769 21220 40556 41472 70802 70802 -0.1090392625635559 SPSGKLVQIEY 11 Unmodified _SPSGKLVQIEY_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.8303833007812 2 610.829703 1219.64485 0.60015 0.00036659 0.29322 0.00017911 0.89337 0.0005457 610.8297737443461 47.582 0.29818 47.582 47.427 47.725 0 39 13 4 0 0 0 0.00017946 2 26020 26020;26131 92.201 25.744 1 15434000 60770 2440 40557 41473 70803;70804 70803 0.04381648986372966 SPSGKLVQIEY 11 Unmodified _SPSGKLVQIEY_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.830322265625 2 610.829703 1219.64485 0.65181 0.00039814 -0.10012 -6.1155E-05 0.55169 0.00033699 610.8297309760617 47.807 0.26755 47.455 47.308 47.575 -0.3526 36 12 4 0 0 0 0.0039716 1 25598 25598 77.049 10.592 1 18653000 60771 2440 40557 41473 70805 70805 0.04381648986372966 SPSGKLVQIEY 11 Unmodified _SPSGKLVQIEY_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.829345703125 2 610.829703 1219.64485 0.7619 0.00046539 -0.15807 -9.6551E-05 0.60384 0.00036884 610.8296713842554 53.417 0.44798 47.613 47.383 47.831 -5.8042 78 28 4 0 0 0 0.0039716 1 33659 33659 77.049 10.592 1 111630000 60772 2440 40557 41473 70806 70806 0.04381648986372966 SPSGRRVYQVL 11 Unmodified _SPSGRRVYQVL_ 0 0 0 ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7 ENST00000584519.5_1_17:15881363-15902918:-|nuORF ENST00000584519.5_1_17:15881363-15902918:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2382202148438 3 421.238566 1260.69387 -0.20335 -8.5657E-05 -0.37085 -0.00015622 -0.57419 -0.00024187 421.2383944420023 32.236 0.32988 32.266 32.084 32.414 0.029743 46 14 4 0 0 0 0.53952 1 16910 16910 24.957 18.723 1 34948000 60773 10513 40558 41474 70807 70807 0.0739498206596636 SPSGRRVYQVL 11 Unmodified _SPSGRRVYQVL_ 0 0 0 ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7 ENST00000584519.5_1_17:15881363-15902918:-|nuORF ENST00000584519.5_1_17:15881363-15902918:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5732116699219 3 421.238566 1260.69387 1.1781 0.00049628 -0.067008 -2.8226E-05 1.1111 0.00046805 421.23861315543377 36.155 0.38125 31.962 31.755 32.137 -4.1928 59 22 3 0 0 0 0.14665 2 20991 20991;21116 30.354 22.068 1 53307000 60774 10513 40558 41474 70808;70809 70808 0.0739498206596636 SPSGRRVYQVL 11 Unmodified _SPSGRRVYQVL_ 0 0 0 ENST00000584519.5_1_17:15881363-15902918:-|nuORF;ENSG00000214941|ENST00000399277|ZSWIM7 ENST00000584519.5_1_17:15881363-15902918:-|nuORF ENST00000584519.5_1_17:15881363-15902918:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3543701171875 2 631.354211 1260.69387 0.73481 0.00046393 0.98202 0.00062 1.7168 0.0010839 631.3549538468865 36.174 0.3299 31.981 31.77 32.1 -4.1928 42 19 3 0 0 0 0.11933 1 21038 21038 40.239 16.219 1 11469000 60775 10513 40558 41474 70810 70810 0.0739498206596636 SPSGTILRL 9 Unmodified _SPSGTILRL_ 0 0 0 nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2825317382812 2 472.282192 942.549831 0.43856 0.00020713 -0.085127 -4.0204E-05 0.35344 0.00016692 472.28226524099216 53.191 0.24772 52.74 52.631 52.878 -0.45173 22 12 2 0 0 0 0.085319 1 28755 28755 36.506 3.7205 1 1990700 60776 7201 40559 41475 70811 70811 0.0762576030585933 SPSGTILRL 9 Unmodified _SPSGTILRL_ 0 0 0 nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.2813110351562 2 472.282192 942.549831 NaN NaN NaN NaN NaN NaN NaN 52.874 1 52.811 52.311 53.311 -0.063423 0 0 0 0.18351 1 28656 28656 32.786 3.7041 1 60777 7201 40559 41475 70812 70812 0.0762576030585933 SPSHITPN 8 Unmodified _SPSHITPN_ 0 0 0 REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF REV__ENST00000361673.3_1_18:56247268-56247712:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7144470214844 2 426.714142 851.413731 NaN NaN NaN NaN NaN NaN NaN 31.897 1 31.897 31.397 32.397 0 0 0 0 0.4236 1 16634 16634 50.855 2.5092 1 + 60778 25931 40560 41476 70813 70813 -0.017919342048230646 SPSHSLPA 8 Unmodified _SPSHSLPA_ 0 0 0 REV__ENST00000589114.5_1_18:33877702-34289359:+|nuORF REV__ENST00000589114.5_1_18:33877702-34289359:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.203369140625 2 398.20341 794.392267 -0.48019 -0.00019121 -0.091743 -3.6533E-05 -0.57193 -0.00022775 398.20336110105495 20.452 0.37598 20.452 20.27 20.646 0 85 45 2 0 0 0 0.6895 1 10222 10222 18.135 0 1 3129800 + 60779 20009 40561 41477 70814 70814 -0.013153192335266795 SPSHSTTS 8 Unmodified _SPSHSTTS_ 0 0 0 nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1;nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1 nc|ENSG00000124496|Q96PN7|TRERF1 nc|ENSG00000124496|Q96PN7|TRERF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1801452636719 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 15.65 1 15.636 15.136 16.136 -0.014067 0 0 0 0.97444 1 7692 7692 0.69038 0 1 60780 3792 40562 41478 70815 70815 -0.06336803855458584 SPSIMVSASI 10 Unmodified _SPSIMVSASI_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF ENSG00000178252|ENST00000608424|WDR6 ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2583618164062 2 496.260068 990.505582 1.0168 0.00050461 3.4163 0.0016954 4.4331 0.0022 496.2609191895249 60.374 1.1403 54.26 53.337 54.478 -6.1147 82 61 2 0 0 0 0.24625 1 38544 38544 30.637 3.7529 1 49067000 60781 8740 40563 41479 70816 70816 0.00994988097352234 SPSIPLSLTM 10 Unmodified _SPSIPLSLTM_ 0 0 0 REV__ENST00000426408.1_1:142619146-142619242:+|nuORF REV__ENST00000426408.1_1:142619146-142619242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2807006835938 2 523.283543 1044.55253 0.44963 0.00023528 -0.60583 -0.00031702 -0.1562 -8.1737E-05 523.282891648756 87.079 0.22234 87.079 86.934 87.156 0 17 14 2 0 0 0 0.71123 1 48176 48176 1.6526 0.85899 1 254900 + 60782 26908 40564 41480 70817 70817 0.03203847648478586 SPSIWFQPY 9 Unmodified _SPSIWFQPY_ 0 0 0 REV__ENSG00000106034|ENST00000310396|CPED1 REV__ENSG00000106034|ENST00000310396|CPED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7734985351562 2 562.7742 1123.53385 0.79034 0.00044478 -1.3276 -0.00074716 -0.5373 -0.00030238 562.7733892494922 54.01 0.31287 54.01 53.839 54.152 0 32 14 3 0 0 0 0.30562 1 29941 29941 16.942 2.104 1 5184500 + 60783 18484 40565 41481 70818 70818 -0.022979459310590755 SPSKIKTFLSL 11 Unmodified _SPSKIKTFLSL_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5800170898438 3 407.579818 1219.71762 0.52691 0.00021476 0.13138 5.355E-05 0.65829 0.00026831 407.5797444096414 57.446 0.23668 57.38 57.239 57.476 -0.066036 18 11 2 0 0 0 0.66568 1 31245 31245 7.4771 0 1 2156700 60784 5126 40566 41482 70819 70819 0.11655402779820179 SPSKIKTFLSL 11 Unmodified _SPSKIKTFLSL_ 0 0 0 ENSG00000175548|ENST00000308742|ALG10B;ENSG00000139133|ENST00000266483|ALG10 ENSG00000175548|ENST00000308742|ALG10B ENSG00000175548|ENST00000308742|ALG10B MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5802612304688 3 407.579818 1219.71762 1.0319 0.00042058 0.22158 9.031E-05 1.2535 0.00051089 407.5798939476287 90.071 0.14171 83.895 83.826 83.968 -6.1757 11 7 2 0 0 0 0.47711 1 59505 59505 17.572 2.734 1 6997700 60785 5126 40566 41482 70820 70820 0.11655402779820179 SPSKKNRLSL 10 Unmodified _SPSKKNRLSL_ 0 0 0 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 ENSG00000162607|ENST00000339950|USP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.8442077636719 3 377.227779 1128.66151 1.2045 0.00045435 -0.53523 -0.0002019 0.66922 0.00025245 377.22770671174777 18.437 0.16245 15.816 15.69 15.853 -2.6215 20 13 2 0 0 0 0.23137 1 9714 9714 10.315 2.3698 1 1989800 60786 6882 40567 41483 70821 70821 0.10232194662989968 SPSKLNWLTL 10 Unmodified _SPSKLNWLTL_ 0 0 0 REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L REV__nc|ENSG00000145087|Q9Y2K9|STXBP5L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7745361328125 2 579.829506 1157.64446 0.89732 0.00052029 -1.5276 -0.00088576 -0.63031 -0.00036547 579.8285439653204 70.225 0.20515 70.261 70.153 70.358 0.035515 15 9 2 0 0 0 0.23412 1 38613 38613 9.3831 1.473 1 1538800 + 60787 29680 40568 41484 70822 70822 0.07194274057178518 SPSKPTLAY 9 Unmodified _SPSKPTLAY_ 0 0 0 nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2615051269531 2 482.260925 962.507297 0.23634 0.00011398 1.2648 0.00060997 1.5012 0.00072395 482.26192773684573 31.536 0.22153 31.536 31.398 31.619 0 27 10 3 0 0 0 0.078314 1 16398 16398 38.176 14.155 1 5686900 60788 7426 40569 41485 70823 70823 0.02454365177618456 SPSKPTLAY 9 Unmodified _SPSKPTLAY_ 0 0 0 nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.261474609375 2 482.260925 962.507297 0.7548 0.00036401 0.12965 6.2525E-05 0.88445 0.00042654 482.2609742187232 35.279 0.36061 31.184 31.023 31.384 -4.0951 39 21 2 0 0 0 0.012228 2 20518 20392;20518 74.2 32.36 1 34848000 60789 7426 40569 41485 70824;70825 70825 0.02454365177618456 SPSKPTLAY 9 Unmodified _SPSKPTLAY_ 0 0 0 nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 482.260925 962.507297 0.29214 0.00014089 1.8811 0.00090719 2.1733 0.0010481 482.2613551452726 31.523 0.19523 31.42 31.309 31.505 -0.10269 0.040216 0.0012008 NaN 74.2 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1675400 60790 7426 40569 41485 0.02454365177618456 SPSKTRGQIQV 11 Unmodified _SPSKTRGQIQV_ 0 0 0 ENST00000592126.1_1_17:76182898-76183075:-|nuORF;ENSG00000167900|ENST00000301634|TK1 ENST00000592126.1_1_17:76182898-76183075:-|nuORF ENST00000592126.1_1_17:76182898-76183075:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8392944335938 2 600.838394 1199.66223 0.4541 0.00027284 0.043541 2.6161E-05 0.49764 0.000299 600.838612285392 20.228 0.32363 17.535 17.4 17.723 -2.693 46 22 3 0 0 0 0.0111 1 10831 10831 66.683 45.093 1 6239300 60791 7680 40570 41486 70826 70826 0.07038989312036392 SPSLKLPLS 9 Unmodified _SPSLKLPLS_ 0 0 0 nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENST00000591851.5_1_17:76047306-76073478:+|nuORF nc|ENSG00000078687|Q9HCJ0-1|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2868041992188 2 471.286943 940.559333 -0.26418 -0.00012451 0.21119 9.953E-05 -0.052994 -2.4975E-05 471.28696722182593 55.333 0.29149 55.333 55.17 55.461 0 19 12 2 0 0 0 0.039985 1 30756 30756 49.933 8.0934 1 3074600 60792 1250 40571 41487 70827 70827 0.0866752859137705 SPSLKLPLS 9 Unmodified _SPSLKLPLS_ 0 0 0 nc|ENSG00000078687|Q9HCJ0-1|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;ENSG00000078687|ENST00000696270|TNRC6C;ENST00000591851.5_1_17:76047306-76073478:+|nuORF nc|ENSG00000078687|Q9HCJ0-1|TNRC6C nc|ENSG00000078687|Q9HCJ0-1|TNRC6C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2864685058594 2 471.286943 940.559333 0.10235 4.8235E-05 -0.41293 -0.00019461 -0.31058 -0.00014637 471.2867380390941 55.79 0.34666 55.312 55.112 55.459 -0.47798 40 16 3 0 0 0 0.15471 1 30335 30335 27.629 1.3607 1 8324600 60793 1250 40571 41487 70828 70828 0.0866752859137705 SPSLLQLQ 8 Unmodified _SPSLLQLQ_ 0 0 0 REV__ENSG00000166747|ENST00000299980|AP1G1 REV__ENSG00000166747|ENST00000299980|AP1G1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 443.040771484375 2 443.255643 884.496732 1.1398 0.0005052 0.45595 0.0002021 1.5957 0.00070731 443.25582054320245 19.462 0.27776 16.806 16.66 16.938 -2.6564 43 27 2 0 0 0 8.7369 1 10242 10242 2.0598 0 1 7672100 + 60794 22145 40572 41488 70829 70829 0.04986382523202337 SPSLPNITL 9 Unmodified _SPSLPNITL_ 0 0 0 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF;nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;nc|ENSG00000048052|Q9UKV0-4|HDAC9 ENST00000535493.5_1_2:240016681-240219867:-|nuORF;nc|ENSG00000048052|Q9UKV0-2|HDAC9 ENST00000535493.5_1_2:240016681-240219867:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.268798828125 2 471.26875 940.522947 0.62067 0.0002925 -0.32837 -0.00015475 0.2923 0.00013775 471.2685016007387 82.809 0.3517 76.633 76.438 76.79 -6.1757 32 19 2 0 0 0 0.00856 1 54398 54398 100.37 33.028 1 15184000 60795 970;697 40573 41489 70830 70830 0.0503065169467618 SPSLRKQVF 9 Unmodified _SPSLRKQVF_ 0 0 0 ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1 ENST00000565844.1_1_16:19721758-19726357:-|nuORF ENST00000565844.1_1_16:19721758-19726357:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3084106445312 2 531.308741 1060.60293 0.12823 6.8128E-05 -0.17573 -9.3369E-05 -0.047508 -2.5241E-05 531.3086525564682 28.758 0.16555 28.788 28.681 28.846 0.029564 10 6 2 0 0 0 0.085319 1 15002 15002 36.506 17.249 1 2861400 60796 2153 40574 41490 70831 70831 0.07505138088527019 SPSLRKQVF 9 Unmodified _SPSLRKQVF_ 0 0 0 ENST00000565844.1_1_16:19721758-19726357:-|nuORF;ENSG00000103550|ENST00000219837|KNOP1 ENST00000565844.1_1_16:19721758-19726357:-|nuORF ENST00000565844.1_1_16:19721758-19726357:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 531.308741 1060.60293 1.0472 0.00055641 -0.68747 -0.00036526 0.35977 0.00019115 531.3083160000002 32.284 0.23228 28.427 28.301 28.533 -3.8562 -0.18018 -0.00021779 NaN 36.506 15 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5934500 60797 2153 40574 41490 0.07505138088527019 SPSPLDEKMVS 11 Unmodified _SPSPLDEKMVS_ 0 0 0 REV__nc|ENSG00000112782|Q9NZA1|CLIC5 REV__nc|ENSG00000112782|Q9NZA1|CLIC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2905883789062 2 595.292096 1188.56964 0.066483 3.9577E-05 -1.6976 -0.0010106 -1.6311 -0.00097098 595.2914153993903 76.008 0.50085 76.008 75.77 76.271 0 39 20 3 0 0 0 0.53952 2 42311 42311;42359 14.405 0.141 1 4235200 + 60798 29577 40575 41491 70832;70833 70832 -0.017102765363461003 SPSPNYQKY 9 Unmodified _SPSPNYQKY_ 0 0 0 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 ENSG00000150907|ENST00000379561|FOXO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.259765625 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 21.946 1 21.946 21.446 22.446 0 0 0 0 0.53226 1 11143 11143 14.838 4.7643 1 60799 6078 40576 41492 70834 70834 -0.03467724316078602 SPSPQAPPLY 10 Unmodified _SPSPQAPPLY_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7794189453125 2 528.771657 1055.52876 -0.22936 -0.00012128 -0.1275 -6.7419E-05 -0.35686 -0.0001887 528.7711280498843 48.539 0.55651 48.539 48.251 48.808 0 62 26 3 0 0 0 0.54684 1 26558 26558 13.906 2.2658 1 113210000 + 60800 19195 40577 41493 70835 70835 0.003217502063534994 SPSPQAPPLY 10 Unmodified _SPSPQAPPLY_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.780029296875 2 528.771657 1055.52876 0.89834 0.00047502 0.90965 0.000481 1.808 0.00095602 528.7716946246163 54.512 0.73196 48.647 48.211 48.943 -5.8653 143 44 4 0 0 0 0.56348 1 34342 34342 13.042 0.51092 1 510540000 + 60801 19195 40577 41493 70836 70836 0.003217502063534994 SPSPSPVGY 9 Unmodified _SPSPSPVGY_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 890.4241333007812 1 890.425424 889.418148 -0.61098 -0.00054403 -0.03297 -2.9358E-05 -0.64395 -0.00057339 890.4256801292196 34.624 0.21713 34.624 34.478 34.695 0 17 10 2 0 0 0 0.0018186 1 18221 18221 133.7 52.089 1 1366200 60802 9785 40578 41494 70837 70837 -0.030984697818894347 SPSPSTKL 8 Unmodified _SPSPSTKL_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7255859375 2 408.726718 815.438883 NaN NaN NaN NaN NaN NaN NaN 20.73 1 20.73 20.23 21.23 0 0 0 0 0.92941 1 10445 10445 14.838 0 1 + 60803 24644 40579 41495 70838 70838 0.023781205977684294 SPSPWRLAL 9 Unmodified _SPSPWRLAL_ 0 0 0 REV__ENST00000377893.2_1_1:6307920-6308091:-|nuORF REV__ENST00000377893.2_1_1:6307920-6308091:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8131103515625 2 513.790184 1025.56581 0.2572 0.00013215 -0.32091 -0.00016488 -0.063714 -3.2736E-05 513.7906131265748 55.212 0.27574 54.734 54.607 54.883 -0.47798 25 12 3 0 0 0 0.069627 1 29916 29916 37.974 0 1 3224700 + 60804 26255 40580 41496 70839 70839 0.05405466542742943 SPSQPKLPIS 10 Unmodified _SPSQPKLPIS_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.3010864257812 2 527.300581 1052.58661 0.42321 0.00022316 0.9942 0.00052424 1.4174 0.0007474 527.3011813918101 78.296 0.33086 78.296 78.101 78.432 0 27 14 3 0 0 0 0.40136 1 43477 43477 21.537 1.1224 1 1090000 60805 8543 40581 41497 70840 70840 0.06242012131770025 SPSQPKLPIS 10 Unmodified _SPSQPKLPIS_ 0 0 0 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.3013305664062 2 527.300581 1052.58661 0.060001 3.1638E-05 0.87551 0.00046166 0.93551 0.0004933 527.3010601644158 78.82 0.44476 78.334 78.084 78.529 -0.48596 52 17 4 0 0 0 0.085354 2 43103 43103;43199 49.933 2.1843 1 15938000 60806 8543 40581 41497 70841;70842 70841 0.06242012131770025 SPSRFRVIGSL 11 Unmodified _SPSRFRVIGSL_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1;ENST00000531334.1_1_1:21546450-21548377:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9039611816406 3 406.903295 1217.68806 0.90826 0.00036957 -2.1026 -0.00085556 -1.1943 -0.00048598 406.9033039950821 46.538 0.32973 46.505 46.307 46.637 -0.033417 21 15 2 0 0 0 0.57006 1 25068 25068 12.856 0.6812 1 1381900 60807 3293 40582 41498 70843 70843 0.08791883554317792 SPSRGSLRTSL 11 Unmodified _SPSRGSLRTSL_ 0 0 0 ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4 ENSG00000144283|ENST00000389759|PKP4 ENSG00000144283|ENST00000389759|PKP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5501708984375 3 387.550921 1159.63093 0.90853 0.0003521 -0.64714 -0.0002508 0.26139 0.0001013 387.5505331118236 26.893 0.28626 23.856 23.717 24.004 -3.0365 24 14 2 0 0 0 0.30838 1 14858 14858 26.346 4.5463 1 8912900 60808 5597 40583 41499 70844 70844 0.05750416277965087 SPSRILLLF 9 Unmodified _SPSRILLLF_ 0 0 0 nc|ENSG00000176953|Q8NCF5-3|NFATC2IP;nc|ENSG00000176953|Q8NCF5-2|NFATC2IP;ENSG00000176953|ENST00000320805|NFATC2IP nc|ENSG00000176953|Q8NCF5-3|NFATC2IP nc|ENSG00000176953|Q8NCF5-3|NFATC2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3243408203125 2 523.32386 1044.63317 0.97489 0.00051018 0.45773 0.00023954 1.4326 0.00074972 523.3244076808312 99.502 0.15589 93.327 93.243 93.399 -6.1757 25 9 4 0 0 0 0.19361 1 66294 66294 23.79 1.0535 1 64213000 60809 8638 40584 41500 70845 70845 0.11263496753713298 SPSRMIRKL 9 Unmodified _SPSRMIRKL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000470300.5_1_1:247004234-247028597:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2193603515625 3 363.218337 1086.63318 1.594 0.00057897 1.8481 0.00067126 3.4421 0.0012502 363.21891897729876 21.989 0.21288 19.254 19.122 19.335 -2.7348 18 12 2 0 0 0 0.28023 1 11803 11803 17.443 1.2935 1 1599800 60810 6247 40585 41501 70846 70846 0.09333173482059465 SPSRNRMVT 9 Unmodified _SPSRNRMVT_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7747802734375 2 524.271832 1046.52911 0.83473 0.00043763 0.73142 0.00038346 1.5662 0.00082109 524.2724619127581 47.493 0.26099 47.493 47.362 47.623 0 15 11 2 0 0 0 0.45045 1 26060 26060 10.074 0.6908 1 1653400 60811 10907 40586 41502 70847 70847 0.007708466545409465 SPSRNRSLQL 10 Unmodified _SPSRNRSLQL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3220825195312 2 579.322911 1156.63127 0.54391 0.0003151 -0.41655 -0.00024131 0.12736 7.3784E-05 579.322712774144 24.23 0.20213 24.252 24.118 24.32 0.021185 11 7 2 0 0 0 0.67413 1 12508 12508 3.2813 0 1 2978200 60812 3263 40587 41503 70848 70848 0.05921835997810376 SPSRNRSLQL 10 Unmodified _SPSRNRSLQL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5508422851562 3 386.551033 1156.63127 0.12491 4.8286E-05 -0.16998 -6.5706E-05 -0.045066 -1.742E-05 386.55088008334155 24.228 0.37997 24.249 23.987 24.366 0.021185 30 14 3 0 0 0 0.14944 1 12528 12528 39.923 12.835 1 35413000 60813 3263 40587 41503 70849 70849 0.05921835997810376 SPSRNRSLQL 10 Unmodified _SPSRNRSLQL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5511474609375 3 386.551033 1156.63127 0.77218 0.00029849 -0.20469 -7.9122E-05 0.56749 0.00021936 386.5511121697042 26.437 0.58878 23.486 23.214 23.803 -2.9511 115 31 5 0 0 0 0.14944 2 14587 14466;14587 39.923 39.923 1 210630000 60814 3263 40587 41503 70850;70851 70851 0.05921835997810376 SPSRNRSLQL 10 Unmodified _SPSRNRSLQL_ 0 0 0 nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 nc|ENSG00000116871|Q3KQU3-4|MAP7D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.322998046875 2 579.322911 1156.63127 0.38272 0.00022172 0.074821 4.3345E-05 0.45754 0.00026506 579.3229275681782 26.408 0.41297 23.457 23.261 23.674 -2.9511 56 21 4 0 0 0 0.078417 2 14589 14471;14589 36.506 17.113 1 34839000 60815 3263 40587 41503 70852;70853 70853 0.05921835997810376 SPSRPHSFIL 10 Unmodified _SPSRPHSFIL_ 0 0 0 ENST00000552888.1_1_14:32315156-32315513:+|nuORF ENST00000552888.1_1_14:32315156-32315513:+|nuORF ENST00000552888.1_1_14:32315156-32315513:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.210205078125 3 380.876857 1139.60874 0.83074 0.00031641 -2.147 -0.00081774 -1.3163 -0.00050133 380.8761026060246 26.381 0.35551 23.43 23.3 23.656 -2.9511 35 18 3 0 0 0 0.20962 1 14521 14521 28.234 1.1452 1 13007000 60816 15183 40588 41504 70854 70854 0.04452236600195647 SPSRPPSSL 9 Unmodified _SPSRPPSSL_ 0 0 0 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2485656738281 2 464.248349 926.482145 0.20182 9.3697E-05 -0.2026 -9.4055E-05 -0.00077213 -3.5846E-07 464.248301394934 23.524 0.35132 23.524 23.307 23.659 0 48 17 4 0 0 0 0.0085857 2 12034 11941;12034 100.71 9.1977 1 6633100 60817 97 40589 41505 70855;70856 70856 0.015963103750550545 SPSRPPSSL 9 Unmodified _SPSRPPSSL_ 0 0 0 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 chr19:287863-288020|39|19.03|0.33|5.87|-|1|None,PLPP2|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.24853515625 2 464.248349 926.482145 0.30581 0.00014197 -0.097724 -4.5368E-05 0.20808 9.6602E-05 464.2482168215871 26.348 0.44718 23.397 23.15 23.597 -2.9511 56 24 3 0 0 0 0.0033077 2 14541 14411;14541 125.04 28.102 1 31639000 60818 97 40589 41505 70857;70858 70858 0.015963103750550545 SPSRTIIQY 9 Unmodified _SPSRTIIQY_ 0 0 0 ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR ENSG00000177000|ENST00000376590|MTHFR ENSG00000177000|ENST00000376590|MTHFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7899169921875 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 37.822 1 37.822 37.322 38.322 0 0 0 0 0.20976 1 20158 20158 29.841 5.82 1 60819 8646 40590 41506 70859 70859 0.03696841471969492 SPSRTIIQY 9 Unmodified _SPSRTIIQY_ 0 0 0 ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR ENSG00000177000|ENST00000376590|MTHFR ENSG00000177000|ENST00000376590|MTHFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.789794921875 2 532.790381 1063.56621 -0.029321 -1.5622E-05 -1.0684 -0.00056925 -1.0978 -0.00058487 532.7906226381023 38.105 0.4692 37.833 37.681 38.15 -0.27133 50 21 3 0 0 0 0.012668 1 20014 20014 72.968 30.873 1 12238000 60820 8646 40590 41506 70860 70860 0.03696841471969492 SPSRTIIQY 9 Unmodified _SPSRTIIQY_ 0 0 0 ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR ENSG00000177000|ENST00000376590|MTHFR ENSG00000177000|ENST00000376590|MTHFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7910766601562 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 37.785 1 37.802 37.302 38.302 0.01704 0 0 0 0.65645 1 20074 20074 10.8 3.5103 1 60821 8646 40590 41506 70861 70861 0.03696841471969492 SPSRTIIQY 9 Unmodified _SPSRTIIQY_ 0 0 0 ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR ENSG00000177000|ENST00000376590|MTHFR ENSG00000177000|ENST00000376590|MTHFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7880859375 2 532.790381 1063.56621 0.97413 0.00051901 -2.9729 -0.0015839 -1.9987 -0.0010649 532.7881385886252 42.551 0.47923 37.867 37.592 38.072 -4.6846 66 31 3 0 0 0 0.029718 2 25595 25595;25723 55.503 18.513 1 51260000 60822 8646 40590 41506 70862;70863 70862 0.03696841471969492 SPSSASWVS 9 Unmodified _SPSSASWVS_ 0 0 0 REV__ENST00000390545.2_1_14:106110037-106110124:-|nuORF REV__ENST00000390545.2_1_14:106110037-106110124:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2108459472656 2 454.211432 906.408311 -0.1971 -8.9524E-05 -0.19851 -9.0164E-05 -0.3956 -0.00017969 454.2114626337138 33.845 0.30362 33.845 33.688 33.991 0 22 14 2 0 0 0 0.07916 1 17762 17762 37.974 1.4678 1 4671000 + 60823 26367 40591 41507 70864 70864 -0.048636577872798625 SPSSDSLLF 9 Unmodified _SPSSDSLLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4620971679688 1 952.462204 951.454927 -0.070591 -6.7235E-05 -0.35383 -0.00033701 -0.42442 -0.00040425 952.4618580122295 67.216 0.27863 67.216 67.064 67.342 0 19 11 2 0 0 0 0.026094 1 37459 37459 57.471 9.1255 1 671810 60824 10766 40592 41508 70865 70865 -0.022742179559941178 SPSSILSTL 9 Unmodified _SPSSILSTL_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7529907226562 2 452.752933 903.491313 0.48164 0.00021807 -0.039131 -1.7716E-05 0.44251 0.00020035 452.75288024166207 72.106 0.3988 71.63 71.415 71.813 -0.4761 40 16 3 0 0 0 0.016184 1 39416 39416 67.344 13.768 1 4193600 60825 7214 40593 41509 70866 70866 0.035706589407254796 SPSSILSTL 9 Unmodified _SPSSILSTL_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7533264160156 2 452.752933 903.491313 0.49814 0.00022554 -0.27819 -0.00012595 0.21996 9.9587E-05 452.75317470073287 78.588 0.70689 72.412 72.142 72.849 -6.1757 56 42 2 0 0 0 0.0090851 3 51388 51388;51523;51657 85.357 14.641 1 15959000 60826 7214 40593 41509 70867;70868;70869 70867 0.035706589407254796 SPSSILSTL 9 Unmodified _SPSSILSTL_ 0 0 0 ENST00000519287.1_1_5:159849240-159855685:+|nuORF;ENSG00000164611|ENST00000352433|PTTG1;nc|ENSG00000250254|Q9NZH5|PTTG2 ENST00000519287.1_1_5:159849240-159855685:+|nuORF ENST00000519287.1_1_5:159849240-159855685:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 452.752933 903.491313 0.17928 8.1169E-05 1.5953 0.00072227 1.7746 0.00080344 452.7530001451557 71.739 0.29543 71.739 71.523 71.819 0 0.05409 0.001305 NaN 67.344 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 550910 60827 7214 40593 41509 0.035706589407254796 SPSSISSPG 9 Unmodified _SPSSISSPG_ 0 0 0 ENSG00000146776|ENST00000419735|ATXN7L1;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1 ENSG00000146776|ENST00000419735|ATXN7L1 ENSG00000146776|ENST00000419735|ATXN7L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.3892211914062 1 818.389039 817.381762 -0.53787 -0.00044019 0.43815 0.00035858 -0.099722 -8.1611E-05 818.3894091939754 25.624 0.43181 25.624 25.305 25.737 0 33 20 2 0 0 0 0.042911 1 13030 13030 48.346 0 1 1117800 60828 5794 40594 41510 70870 70870 -0.03423346678607686 SPSSKSNN 8 Unmodified _SPSSKSNN_ 0 0 0 REV__ENSG00000198873|ENST00000392870|GRK5 REV__ENSG00000198873|ENST00000392870|GRK5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 410.5457458496094 2 410.693407 819.37226 0.96451 0.00039612 -2.8202 -0.0011582 -1.8557 -0.00076213 410.6914156977615 84.204 0.23373 78.029 77.874 78.107 -6.1757 17 12 2 0 0 0 8.7369 1 55295 55295 4.3292 0 1 7234900 + 60829 24085 40595 41511 70871 70871 -0.04465114964136774 SPSSLHFLY 9 Unmodified _SPSSLHFLY_ 0 0 0 ENSG00000215193|ENST00000399744|PEX26;nc|ENSG00000215193|Q7Z412-2|PEX26 ENSG00000215193|ENST00000399744|PEX26 ENSG00000215193|ENST00000399744|PEX26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7658081054688 2 525.766374 1049.5182 0.088967 4.6776E-05 0.080665 4.2411E-05 0.16963 8.9187E-05 525.766618734821 60.026 0.23422 59.535 59.372 59.607 -0.49079 19 11 2 0 0 0 0.038285 1 32677 32677 50.855 14.811 1 4839000 60830 10525 40596 41512 70872 70872 -0.004582324480907118 SPSSLLIPL 9 Unmodified _SPSSLLIPL_ 0 0 0 REV__ENST00000359534.3_1_6:39157615-39157828:-|nuORF REV__ENST00000359534.3_1_6:39157615-39157828:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 926.5562744140625 1 926.55571 925.548434 -0.11991 -0.0001111 1.4604 0.0013531 1.3405 0.001242 926.5568284706305 78.717 0.31441 78.231 78.035 78.349 -0.48596 18 11 2 0 0 0 0.2143 1 43044 43044 21.747 0 1 643030 + 60831 25891 40597 41513 70873 70873 0.082681262171036 SPSSLLLTS 9 Unmodified _SPSSLLLTS_ 0 0 0 nc|ENSG00000182352|Q96MU5|CD300LD-AS1 nc|ENSG00000182352|Q96MU5|CD300LD-AS1 nc|ENSG00000182352|Q96MU5|CD300LD-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 904.5012817382812 1 904.498589 903.491313 0.052204 4.7218E-05 0.416 0.00037627 0.4682 0.00042349 904.4989784193422 72.105 0.30298 71.629 71.469 71.772 -0.47609 18 12 2 0 0 0 0.06187 1 39411 39411 42.095 0 1 1783100 60832 16436 40598 41514 70874 70874 0.035706589407254796 SPSSLQGPEL 10 Unmodified _SPSSLQGPEL_ 0 0 0 ENSG00000168546|ENST00000524240|GFRA2;ENST00000306793.4_1_8:21550792-21640469:-|nuORF ENSG00000168546|ENST00000524240|GFRA2 ENSG00000168546|ENST00000524240|GFRA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2800903320312 2 507.758746 1013.50294 0.58093 0.00029497 -1.0408 -0.00052849 -0.45991 -0.00023352 507.7583772902315 51.574 0.31841 51.574 51.412 51.73 0 31 14 3 0 0 0 0.070831 1 28415 28415 65.235 27.261 1 5067000 60833 7779 40599 41515 70875 70875 -0.003271440359412736 SPSSPGSSL 9 Unmodified _SPSSPGSSL_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.3907470703125 1 818.389039 817.381762 -0.53787 -0.00044019 0.43815 0.00035858 -0.099722 -8.1611E-05 818.3894091939754 25.624 0.43181 25.624 25.305 25.737 0 33 20 2 0 0 0 0.0082661 1 13133 13133 92.491 10.601 1 1117800 60834 8309 40600 41516 70876 70876 -0.034233466785963174 SPSSSALSESF 11 Unmodified _SPSSSALSESF_ 0 0 0 REV__ENST00000262544.6_1_20:18488366-18488540:+|nuORF REV__ENST00000262544.6_1_20:18488366-18488540:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 549.7496337890625 2 549.751118 1097.48768 NaN NaN NaN NaN NaN NaN NaN 47.364 1 42.283 41.783 42.783 -5.0805 0 0 0 0.45469 1 29389 29389 26.268 2.2476 1 + 60835 25025 40601 41517 70877 70877 -0.057160556237931814 SPSSTRKVPL 10 Unmodified _SPSSTRKVPL_ 0 0 0 ENST00000543953.5_1_X:129473936-129479174:+|nuORF ENST00000543953.5_1_X:129473936-129479174:+|nuORF ENST00000543953.5_1_X:129473936-129479174:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3121948242188 2 536.31148 1070.60841 0.075854 4.0681E-05 1.1233 0.00060241 1.1991 0.00064309 536.3117683049128 23.43 0.21825 20.651 20.572 20.79 -2.7784 20 12 2 0 0 0 0.32493 1 12670 12670 26.021 3.3626 1 1738400 60836 15077 40602 41518 70878 70878 0.07592816880332975 SPSSTRKVPL 10 Unmodified _SPSSTRKVPL_ 0 0 0 ENST00000543953.5_1_X:129473936-129479174:+|nuORF ENST00000543953.5_1_X:129473936-129479174:+|nuORF ENST00000543953.5_1_X:129473936-129479174:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8770141601562 3 357.876746 1070.60841 0.84437 0.00030218 1.1427 0.00040894 1.9871 0.00071112 357.8769902053676 23.475 0.31356 20.648 20.477 20.791 -2.8273 52 18 5 0 0 0 0.50362 1 12751 12751 14.218 3.3942 1 8343400 60837 15077 40602 41518 70879 70879 0.07592816880332975 SPSSVSNTF 9 Unmodified _SPSSVSNTF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.217041015625 2 463.216714 924.418876 -0.028516 -1.3209E-05 0.22306 0.00010332 0.19454 9.0115E-05 463.21674776384526 33.85 0.34136 33.85 33.667 34.009 0 51 16 4 0 0 0 0.0095811 2 17736 17736;17840 81.613 53.126 1 42802000 60838 5669 40603 41519 70880;70881 70880 -0.046356751328403334 SPSSVSNTF 9 Unmodified _SPSSVSNTF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4261474609375 1 925.426152 924.418876 -0.36956 -0.000342 0.54767 0.00050683 0.17811 0.00016483 925.4268340063466 33.85 0.24234 33.85 33.728 33.97 0 21 11 2 0 0 0 0.0090948 2 17744 17744;17853 85.272 51.17 1 3838600 60839 5669 40603 41519 70882;70883 70882 -0.046356751328403334 SPSSVSNTF 9 Unmodified _SPSSVSNTF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2164916992188 2 463.216714 924.418876 0.82565 0.00038245 0.065996 3.0571E-05 0.89165 0.00041302 463.2166886635655 39.458 0.51498 35.007 34.766 35.281 -4.4509 76 31 3 0 0 0 0.0082485 3 23568 23305;23431;23568 96.285 52.531 1 87082000 60840 5669 40603 41519 70884;70885;70886 70886 -0.046356751328403334 SPSSVSNTF 9 Unmodified _SPSSVSNTF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.4275512695312 1 925.426152 924.418876 0.82366 0.00076224 -0.027985 -2.5899E-05 0.79568 0.00073634 925.4262976099598 39.494 0.36907 35.043 34.825 35.194 -4.4509 37 21 2 0 0 0 5.3094E-21 2 23453 23323;23453 198.25 123.32 1 13103000 60841 5669 40603 41519 70887;70888 70888 -0.046356751328403334 SPSSVSNTF 9 Unmodified _SPSSVSNTF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 463.216714 924.418876 0.17576 8.1413E-05 0.29435 0.00013635 0.47011 0.00021776 463.21702629263507 33.728 0.1441 33.757 33.648 33.792 0.028934 -0.046702 5.0456E-05 NaN 81.613 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 485290 60842 5669 40603 41519 -0.046356751328403334 SPSSVTGNAL 10 Unmodified _SPSSVTGNAL_ 0 0 0 ENSG00000166848|ENST00000300086|TERF2IP ENSG00000166848|ENST00000300086|TERF2IP ENSG00000166848|ENST00000300086|TERF2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.737060546875 2 466.737814 931.461075 -0.0083529 -3.8986E-06 -0.1487 -6.9406E-05 -0.15706 -7.3305E-05 466.7374375378939 33.348 0.25082 33.348 33.183 33.434 0 22 12 3 0 0 0 0.0045909 1 17468 17468 99.799 10.845 1 2585500 60843 7538 40604 41520 70889 70889 -0.0073969972447684995 SPSTKLLTL 9 Unmodified _SPSTKLLTL_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2916564941406 2 480.292225 958.569897 0.48127 0.00023115 -0.66727 -0.00032048 -0.186 -8.9334E-05 480.29182132002546 53.931 0.21994 53.464 53.347 53.567 -0.46664 23 10 3 0 0 0 0.0088668 1 29182 29182 87.258 23.298 1 3526000 60844 4653 40605 41521 70890 70890 0.08895511245816579 SPSTKLLTL 9 Unmodified _SPSTKLLTL_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2930603027344 2 480.292225 958.569897 1.2739 0.00061184 -1.0142 -0.00048711 0.2597 0.00012473 480.29189125733296 59.198 0.30645 53.124 52.953 53.26 -6.0745 26 16 2 0 0 0 0.013118 1 37930 37930 71.708 16.205 1 16571000 60845 4653 40605 41521 70891 70891 0.08895511245816579 SPSTKLLTL 9 Unmodified _SPSTKLLTL_ 0 0 0 nc|ENSG00000134909|A7KAX9|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ENST00000534357.1_1_11:128850446-128851410:-|nuORF nc|ENSG00000134909|A7KAX9|ARHGAP32 nc|ENSG00000134909|A7KAX9|ARHGAP32 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 480.292225 958.569897 -0.22564 -0.00010838 0.78947 0.00037917 0.56382 0.0002708 480.29305063660837 53.553 0.07592 53.49 53.423 53.499 -0.063423 0.13064 0.0014767 NaN 87.258 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1880600 60846 4653 40605 41521 0.08895511245816579 SPSTLLTTL 9 Unmodified _SPSTLLTTL_ 0 0 0 ENSG00000198218|ENST00000395443|QRICH1;ENST00000498392.1_1_3:49070551-49070749:-|nuORF;ENST00000479449.1_1_3:49070551-49094468:-|nuORF ENSG00000198218|ENST00000395443|QRICH1 ENSG00000198218|ENST00000395443|QRICH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7674255371094 2 466.768583 931.522613 NaN NaN NaN NaN NaN NaN NaN 72.192 1 71.716 71.216 72.216 -0.47609 0 0 0 0.33856 1 39506 39506 23.148 8.5667 1 60847 10065 40606 41522 70892 70892 0.05411231974801467 SPSTLRKHTRL 11 Unmodified _SPSTLRKHTRL_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000476194.1_1_6:136593123-136594302:-|nuORF;ENST00000534792.5_1_6:136590573-136594302:-|nuORF;ENST00000534269.5_1_6:136590404-136595119:-|nuORF nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.5904846191406 3 432.589599 1294.74697 0.27641 0.00011957 0.56938 0.00024631 0.84578 0.00036588 432.58971407826573 15.171 0.097134 12.644 12.584 12.681 -2.5273 19 13 2 0 0 0 0.64653 1 7764 7764 4.8923 2.6396 1 1938800 60848 577 40607 41523 70893 70893 0.11138359848655455 SPSTSIFFI 9 Unmodified _SPSTSIFFI_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20221201_MKP_PDAC_01 4 499.7633972167969 2 499.7633 997.512048 NaN NaN NaN NaN NaN NaN NaN 89.709 1 83.533 83.033 84.033 -6.1757 0 0 0 0.043758 1 59225 59225 60.39 0 1 60849 9593 40608 41524 70894 70894 0.013192493203860067 SPSVDKARAEL 11 Unmodified _SPSVDKARAEL_ 0 0 0 nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21868632-21871788:-|nuORF;ENST00000492117.1_1_Y:21868632-21877911:-|nuORF nc|ENSG00000012817|Q9BY66-2|KDM5D nc|ENSG00000012817|Q9BY66-2|KDM5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5470275878906 3 391.547177 1171.6197 -0.53071 -0.0002078 0.30571 0.0001197 -0.225 -8.8097E-05 391.5473948115824 26.048 0.14068 26.048 25.965 26.106 0 14 6 3 0 0 0 0.56863 1 13386 13386 12.929 3.6849 1 1596300 60850 464 40609 41525 70895 70895 0.04075594183814246 SPSVEKYRYQ 10 Unmodified _SPSVEKYRYQ_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;ENST00000471733.5_1_3:196807912-197024075:-|nuORF;ENST00000485409.5_1_3:196921289-197023334:-|nuORF nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.817626953125 2 628.817127 1255.6197 1.3636 0.00085744 -0.30883 -0.0001942 1.0547 0.00066324 628.816895088792 46.634 0.30226 46.6 46.431 46.733 -0.033417 42 14 4 0 0 0 0.38026 2 25053 25053;25161 32.786 10.128 1 21111000 60851 1168 40610 41526 70896;70897 70896 0.002115941838155777 SPSVHPIASL 10 Unmodified _SPSVHPIASL_ 0 0 0 REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF REV__ENST00000481918.1_1_1:213186664-213188729:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2803955078125 2 504.279649 1006.54475 0.51478 0.00025959 0.50196 0.00025313 1.0167 0.00051272 504.2798880318604 48.017 0.74413 47.978 47.62 48.364 -0.038643 88 36 3 0 0 0 0.24625 1 26051 26051 30.637 3.0077 1 142720000 + 60852 27709 40611 41527 70898 70898 0.04173456443231771 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.5507202148438 1 942.550625 941.543348 -0.12809 -0.00012074 0.7568 0.00071333 0.62871 0.00059259 942.5512509835555 81.424 0.355 81.424 81.238 81.593 0 36 15 3 0 0 0 0.012148 2 45248 45147;45248 74.423 32.328 1 3104700 60853 9762 40612 41528 70899;70900 70900 0.070238223544834 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7792358398438 2 471.778951 941.543348 0.32433 0.00015301 0.3521 0.00016611 0.67642 0.00031912 471.77907821054384 81.419 0.39578 81.419 81.217 81.613 0 38 17 3 0 0 0 0.019303 1 45223 45223 64.236 30.134 1 2222900 60854 9762 40612 41528 70901 70901 0.070238223544834 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 942.55078125 1 942.550625 941.543348 0.61539 0.00058004 -0.17809 -0.00016785 0.4373 0.00041218 942.5504710371082 81.913 0.29544 81.418 81.262 81.557 -0.4952 25 10 3 0 0 0 0.042911 2 44803 44803;44904 48.346 16.229 1 1846400 60855 9762 40612 41528 70902;70903 70902 0.070238223544834 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7789306640625 2 471.778951 941.543348 0.74486 0.00035141 0.52745 0.00024884 1.2723 0.00060025 471.779174365361 81.908 0.39626 81.413 81.21 81.606 -0.4952 33 14 3 0 0 0 0.06187 1 44814 44814 42.095 13.608 1 1916500 60856 9762 40612 41528 70904 70904 0.070238223544834 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.5526733398438 1 942.550625 941.543348 0.66212 0.00062408 -0.85664 -0.00080743 -0.19452 -0.00018335 942.550517084355 89.108 0.41875 82.933 82.746 83.165 -6.1757 39 23 2 0 0 0 0.0088975 3 58856 58725;58856;58943 104.8 37.455 1 13900000 60857 9762 40612 41528 70905;70906;70907 70906 0.070238223544834 SPSVLVVEL 9 Unmodified _SPSVLVVEL_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7795715332031 2 471.778951 941.543348 1.1236 0.00053011 -0.42573 -0.00020085 0.69791 0.00032926 471.77909574754426 89.136 0.44155 82.96 82.685 83.127 -6.1757 58 24 3 0 0 0 0.0082281 2 58751 58751;58875 92.822 32.433 1 23753000 60858 9762 40612 41528 70908;70909 70908 0.070238223544834 SPSVTMVTL 9 Oxidation (M) _SPSVTM(Oxidation (M))VTL_ SPSVTM(1)VTL SPSVTM(42)VTL 0 0 1 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7481384277344 2 475.746793 949.479033 0.26812 0.00012756 -0.090588 -4.3097E-05 0.17753 8.4459E-05 475.74714805751864 52.628 0.26417 52.628 52.508 52.773 0 29 11 3 0 0 0 0.06187 1 29147 29147 42.095 13.608 1 5989800 60859 2778 40613 41529 70910 70910 484 0.0022729920602841958 SPSVVLASY 9 Unmodified _SPSVVLASY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4894409179688 1 922.488024 921.480748 0.47678 0.00043982 -0.27702 -0.00025555 0.19975 0.00018427 922.4878691300828 53.37 0.3305 53.37 53.195 53.525 0 36 14 3 0 0 0 0.0067112 2 29628 29517;29628 112.59 18.013 1 8635000 60860 7010 40614 41530 70911;70912 70912 0.01686676286283273 SPSVVLASY 9 Unmodified _SPSVVLASY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7474060058594 2 461.74765 921.480748 0.85464 0.00039463 -0.80892 -0.00037352 0.045722 2.1112E-05 461.74720783755873 53.352 0.26193 53.352 53.244 53.506 0 17 11 2 0 0 0 0.0090851 1 29579 29579 85.357 34.502 1 1830600 60861 7010 40614 41530 70913 70913 0.01686676286283273 SPSVVLASY 9 Unmodified _SPSVVLASY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 922.4867553710938 1 922.488024 921.480748 0.18037 0.00016639 -0.18451 -0.0001702 -0.0041305 -3.8103E-06 922.4879659482616 53.937 0.25847 53.47 53.347 53.606 -0.46664 30 12 3 0 0 0 0.0090851 2 29268 29161;29268 85.357 10.934 1 6228900 60862 7010 40614 41530 70914;70915 70915 0.01686676286283273 SPSVVLASY 9 Unmodified _SPSVVLASY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.4890747070312 1 922.488024 921.480748 0.97594 0.00090029 -0.22807 -0.00021039 0.74786 0.0006899 922.4880218920434 61.184 0.34836 55.037 54.846 55.195 -6.1478 36 17 3 0 0 0 0.0067112 2 39321 39321;39445 112.59 7.794 1 44489000 60863 7010 40614 41530 70916;70917 70916 0.01686676286283273 SPSVVLASY 9 Unmodified _SPSVVLASY_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.250732421875 2 461.74765 921.480748 1.068 0.00049314 0.014571 6.728E-06 1.0825 0.00049986 461.74751198953595 61.152 0.32972 55.004 54.865 55.195 -6.1478 24 16 2 0 0 0 0.0083087 1 39375 39375 97.075 19.09 1 35033000 60864 7010 40614 41530 70918 70918 0.01686676286283273 SPSVYLVAS 9 Unmodified _SPSVYLVAS_ 0 0 0 KIF26B-C1orf101|2|fusion;nc|ENSG00000179397|Q5SY80-3|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE KIF26B-C1orf101|2|fusion KIF26B-C1orf101|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 924.497802734375 1 922.488024 921.480748 0.18037 0.00016639 -0.18451 -0.0001702 -0.0041305 -3.8103E-06 922.4879659482616 53.937 0.25847 53.47 53.347 53.606 -0.46664 30 12 3 0 0 0 0.41742 1 29184 29184 11.64 0 1 6228900 60865 15940 40615 41531 70919 70919 0.01686676286283273 SPSWRSTTVL 10 Unmodified _SPSWRSTTVL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3003540039062 2 567.301113 1132.58767 NaN NaN NaN NaN NaN NaN NaN 46.836 1 46.802 46.302 47.302 -0.033417 0 0 0 0.45397 1 25214 25214 28.495 3.0952 1 60866 10015 40616 41532 70920 70920 0.026682265006456873 SPSWSPCCR 9 Unmodified _SPSWSPCCR_ 0 0 0 REV__ENST00000382142.7_1_5:32312928-32313105:-|nuORF REV__ENST00000382142.7_1_5:32312928-32313105:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7115478515625 2 511.712762 1021.41097 0.12986 6.645E-05 -1.6026 -0.00082006 -1.4727 -0.00075361 511.7119969544435 63.461 0.35594 62.974 62.793 63.149 -0.48617 35 15 3 0 0 0 0.28023 1 34571 34571 18.146 1.2041 1 6005700 + 60867 26341 40617 41533 70921 70921 -0.0988784892563217 SPSYPEISF 9 Unmodified _SPSYPEISF_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3 ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.741943359375 2 513.742565 1025.47058 0.37482 0.00019256 -0.048018 -2.4669E-05 0.3268 0.00016789 513.742305710295 68.178 0.37691 68.178 67.953 68.33 0 33 18 3 0 0 0 0.49272 2 38056 37953;38056 7.9102 2.5332 1 996950 60868 5934 40618 41534 70922;70923 70923 -0.0411393143897385 SPSYPEISF 9 Unmodified _SPSYPEISF_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3 ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7420043945312 2 513.742565 1025.47058 0.23874 0.00012265 -0.23907 -0.00012282 -0.00033818 -1.7374E-07 513.7423605372111 68.702 0.27949 68.221 68.096 68.376 -0.48071 24 12 3 0 0 0 0.30562 1 37603 37603 16.942 8.349 1 1159600 60869 5934 40618 41534 70924 70924 -0.0411393143897385 SPSYPEISF 9 Unmodified _SPSYPEISF_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3 ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 513.7427368164062 2 513.742565 1025.47058 NaN NaN NaN NaN NaN NaN NaN 75.115 1 68.939 68.439 69.439 -6.1757 0 0 0 0.056448 1 49119 49119 54.774 24.549 1 60870 5934 40618 41534 70925 70925 -0.0411393143897385 SPSYSVTQM 9 Oxidation (M) _SPSYSVTQM(Oxidation (M))_ SPSYSVTQM(1) SPSYSVTQM(48) 0 0 1 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2232971191406 2 508.223682 1014.43281 -0.18485 -9.3945E-05 -0.13513 -6.8677E-05 -0.31998 -0.00016262 508.22354358271605 25.923 0.34944 25.923 25.737 26.087 0 44 16 4 0 0 0 0.042911 1 13261 13261 48.346 12.302 1 2001800 60871 5669 40619 41535 70926 70926 1034 -0.073827656960475 SPSYSVTQM 9 Oxidation (M) _SPSYSVTQM(Oxidation (M))_ SPSYSVTQM(1) SPSYSVTQM(48) 0 0 1 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20221201_MKP_PDAC_01 4 508.2223815917969 2 508.223682 1014.43281 NaN NaN NaN NaN NaN NaN NaN 30.381 1 26.884 26.384 27.384 -3.497 0 0 0 0.083082 1 17144 17144 47.749 23.728 1 60872 5669 40619 41535 70927 70927 1034 -0.073827656960475 SPSYSVTQM 9 Unmodified _SPSYSVTQM_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20221201_MKP_PDAC_01 4 500.2269287109375 2 500.226225 998.437897 NaN NaN NaN NaN NaN NaN NaN 46.994 1 41.913 41.413 42.413 -5.0805 0 0 0 0.10545 1 29118 29118 42.095 18.946 1 60873 5669 40619 41536 70928 70928 -0.06138461833438669 SPTAHCNVL 9 Carbamidomethyl (C) _SPTAHC(Carbamidomethyl (C))NVL_ SPTAHC(1)NVL SPTAHC(56)NVL 0 1 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MSMS AL20221201_MKP_PDAC_01 4 499.7403564453125 2 499.739834 997.465115 NaN NaN NaN NaN NaN NaN NaN 28.807 1 25.659 25.159 26.159 -3.1482 0 0 0 0.053277 1 16102 16102 56.177 27.095 1 60874 2920 40620 41537 70929 70929 300 -0.033719335023988606 SPTAITPVA 9 Unmodified _SPTAITPVA_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 856.4766845703125 1 856.47746 855.470183 -0.2148 -0.00018397 0.67772 0.00058045 0.46293 0.00039649 856.477661003953 40.464 0.15435 40.464 40.391 40.545 0 12 7 2 0 0 0 0.010877 1 21748 21748 77.984 20.513 1 1759600 60875 9939 40621 41538 70930 70930 0.036666936318511034 SPTDGLSVM 9 Oxidation (M) _SPTDGLSVM(Oxidation (M))_ SPTDGLSVM(1) SPTDGLSVM(57) 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4193115234375 1 922.418624 921.411348 -0.50912 -0.00046962 0.14518 0.00013391 -0.36394 -0.00033571 922.4185206680155 34.217 0.24645 34.217 34.156 34.402 0 17 12 2 0 0 0 0.026094 1 18022 18022 57.471 21.427 1 1434400 60876 3224 40622 41539 70931 70931 578 -0.05250150724771174 SPTDGLSVM 9 Oxidation (M) _SPTDGLSVM(Oxidation (M))_ SPTDGLSVM(1) SPTDGLSVM(64) 0 0 1 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7130126953125 2 461.71295 921.411348 1.0246 0.00047306 -0.81289 -0.00037532 0.21169 9.7738E-05 461.7124986195926 40.752 0.49193 36.222 35.988 36.48 -4.5294 50 30 2 0 0 0 0.019303 1 24439 24439 64.236 35.749 1 10154000 60877 3224 40622 41539 70932 70932 578 -0.05250150724771174 SPTDSTPAL 9 Unmodified _SPTDSTPAL_ 0 0 0 nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.4317626953125 1 888.430903 887.423627 0.0043683 3.881E-06 0.38396 0.00034112 0.38833 0.000345 888.4318471284939 35.875 0.22336 35.875 35.713 35.937 0 17 10 2 0 0 0 0.042911 1 18939 18939 48.346 3.9388 1 1900600 60878 2062 40623 41540 70933 70933 -0.024587909901015337 SPTDSTPAL 9 Unmodified _SPTDSTPAL_ 0 0 0 nc|ENSG00000102760|Q9H4X1-2|RGCC;ENSG00000102760|ENST00000379359|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC nc|ENSG00000102760|Q9H4X1-2|RGCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 888.4317626953125 1 888.430903 887.423627 0.13078 0.00011619 1.4279 0.0012686 1.5586 0.0013847 888.4314159470459 42.018 0.28636 37.333 37.173 37.46 -4.6846 22 17 2 0 0 0 0.0082281 1 25294 25294 92.822 25.478 1 5585600 60879 2062 40623 41540 70934 70934 -0.024587909901015337 SPTEHPSVF 9 Unmodified _SPTEHPSVF_ 0 0 0 nc|ENSG00000164938|Q96A56-2|TP53INP1;ENSG00000164938|ENST00000342697|TP53INP1 nc|ENSG00000164938|Q96A56-2|TP53INP1 nc|ENSG00000164938|Q96A56-2|TP53INP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2667846679688 2 500.740357 999.46616 -0.33029 -0.00016539 1.2522 0.00062704 0.92193 0.00046165 500.74138162191974 34.317 0.27071 34.317 34.207 34.478 0 20 13 2 0 0 0 0.19891 1 18056 18056 11.64 4.9171 1 2335400 60880 7268 40624 41541 70935 70935 -0.03359395861855319 SPTENSFTL 9 Unmodified _SPTENSFTL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2379150390625 2 498.237647 994.460741 0.54507 0.00027157 -0.024935 -1.2424E-05 0.52013 0.00025915 498.23759102569477 53.267 0.44199 53.267 53.02 53.462 0 70 19 5 0 0 0 0.0090948 2 29419 29419;29532 85.272 26.593 1 88496000 60881 8150 40625 41542 70936;70937 70936 -0.03671119444311444 SPTENSFTL 9 Unmodified _SPTENSFTL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 995.4692993164062 1 995.468017 994.460741 0.2109 0.00020995 -0.41754 -0.00041565 -0.20663 -0.0002057 995.4678754916498 53.268 0.32075 53.268 53.08 53.401 0 33 13 3 0 0 0 0.0017364 2 29449 29449;29558 134.3 55.568 1 9777400 60882 8150 40625 41542 70938;70939 70938 -0.03671119444311444 SPTENSFTL 9 Unmodified _SPTENSFTL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2375183105469 2 498.237647 994.460741 0.37688 0.00018778 -0.66724 -0.00033244 -0.29035 -0.00014467 498.2373076059652 53.784 0.27607 53.332 53.205 53.481 -0.45173 21 13 2 0 0 0 0.022193 1 29107 29107 61.357 30.721 1 3080100 60883 8150 40625 41542 70940 70940 -0.03671119444311444 SPTENSFTL 9 Unmodified _SPTENSFTL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7391052246094 2 498.237647 994.460741 1.2326 0.00061411 -0.0042133 -2.0992E-06 1.2283 0.00061201 498.2374900173756 60.755 0.59357 54.607 54.308 54.901 -6.1478 74 31 3 0 0 0 0.0082485 3 38985 38985;39099;39228 96.285 44.016 1 152910000 60884 8150 40625 41542 70941;70942;70943 70941 -0.03671119444311444 SPTENSFTL 9 Unmodified _SPTENSFTL_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2 ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 995.4682006835938 1 995.468017 994.460741 1.0128 0.0010082 -0.94141 -0.00093714 0.071362 7.1039E-05 995.4673758142417 60.786 0.43605 54.638 54.391 54.827 -6.1478 40 23 2 0 0 0 0.001066 2 39036 39036;39160 139.14 70.034 1 61531000 60885 8150 40625 41542 70944;70945 70944 -0.03671119444311444 SPTERLYAY 9 Unmodified _SPTERLYAY_ 0 0 0 ENST00000531272.6_1_11:66249671-66254026:+|nuORF;nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3 ENST00000531272.6_1_11:66249671-66254026:+|nuORF ENST00000531272.6_1_11:66249671-66254026:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.274658203125 2 550.274564 1098.53457 0.59804 0.00032909 -0.1044 -5.745E-05 0.49364 0.00027164 550.2745625966274 36.952 0.25937 36.952 36.837 37.097 0 34 12 3 0 0 0 0.076472 1 19607 19607 38.615 13.624 1 10009000 60886 10783 40626 41543 70946 70946 -0.010751512820206699 SPTERLYAY 9 Unmodified _SPTERLYAY_ 0 0 0 ENST00000531272.6_1_11:66249671-66254026:+|nuORF;nc|ENSG00000254986|Q9NY33-2|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;ENSG00000254986|ENST00000531863|DPP3 ENST00000531272.6_1_11:66249671-66254026:+|nuORF ENST00000531272.6_1_11:66249671-66254026:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2767944335938 2 550.274564 1098.53457 1.4499 0.00079782 -1.0531 -0.0005795 0.39674 0.00021832 550.2741627796222 41.696 0.42031 37.088 36.857 37.277 -4.6079 49 27 2 0 0 0 0.021948 3 25047 24947;25047;25189 61.602 28.1 1 14052000 60887 10783 40626 41543 70947;70948;70949 70948 -0.010751512820206699 SPTETPSML 9 Unmodified _SPTETPSML_ 0 0 0 REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF REV__ENST00000337672.7_2_11:57471767-57471908:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 481.7270202636719 2 481.7286 961.442648 NaN NaN NaN NaN NaN NaN NaN 29.716 1 26.415 25.915 26.915 -3.3016 0 0 0 0.23581 1 16729 16729 28.487 3.813 1 + 60888 25665 40627 41544 70950 70950 -0.039615776906771316 SPTEVAGTF 9 Unmodified _SPTEVAGTF_ 0 0 0 ENST00000466942.2_1_10:77167305-77167401:+|nuORF ENST00000466942.2_1_10:77167305-77167401:+|nuORF ENST00000466942.2_1_10:77167305-77167401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4373779296875 1 908.435989 907.428712 0.39013 0.00035441 0.18585 0.00016883 0.57597 0.00052323 908.4355998261293 42.397 0.20933 42.397 42.279 42.488 0 13 9 2 0 0 0 0.019303 1 22935 22935 64.236 30.134 1 1560000 60889 13763 40628 41545 70951 70951 -0.028704871274612742 SPTEVVERL 9 Unmodified _SPTEVVERL_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2825927734375 2 515.282389 1028.55022 0.84546 0.00043565 0.2316 0.00011934 1.0771 0.00055499 515.2821157932973 42.573 0.39754 42.573 42.339 42.737 0 50 19 3 0 0 0 0.012228 2 23132 23015;23132 74.2 16.478 1 18465000 60890 780 40629 41546 70952;70953 70953 0.03709135235044414 SPTEVVERL 9 Unmodified _SPTEVVERL_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MSMS AL20221201_MKP_PDAC_01 4 515.2822875976562 2 515.282389 1028.55022 NaN NaN NaN NaN NaN NaN NaN 48.108 1 42.874 42.374 43.374 -5.2339 0 0 0 0.01832 1 29936 29936 80.676 31.122 1 60891 780 40629 41546 70954 70954 0.03709135235044414 SPTFLNPSD 9 Unmodified _SPTFLNPSD_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2315979003906 2 489.232364 976.450176 0.45608 0.00022313 -0.74111 -0.00036258 -0.28503 -0.00013945 489.2318512973917 53.258 0.39719 53.258 53.003 53.401 0 35 17 3 0 0 0 0.044011 1 29471 29471 47.749 1.7277 1 5331400 60892 543 40630 41547 70955 70955 -0.038991020987623415 SPTFTSVTF 9 Unmodified _SPTFTSVTF_ 0 0 0 ENST00000301633.8_1_17:76220499-76220640:+|nuORF ENST00000301633.8_1_17:76220499-76220640:+|nuORF ENST00000301633.8_1_17:76220499-76220640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7451477050781 2 493.745108 985.475663 -0.25672 -0.00012675 -1.297 -0.00064037 -1.5537 -0.00076712 493.7443493407012 71.182 0.40892 71.182 70.975 71.384 0 44 19 3 0 0 0 0.23158 1 39613 39613 20.454 3.3671 1 5579000 60893 11572 40631 41548 70956 70956 -0.017656275763329177 SPTGAHIIAQ 10 Unmodified _SPTGAHIIAQ_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2375793457031 2 497.769448 993.524344 0.25523 0.00012705 -0.34493 -0.0001717 -0.089697 -4.4649E-05 497.76931656603506 37.29 0.22975 37.29 37.159 37.389 0 17 11 2 0 0 0 0.22636 1 19870 19870 17.113 0.96379 1 2536100 60894 5772 40632 41549 70957 70957 0.02732285783417865 SPTGHSLRPL 10 Unmodified _SPTGHSLRPL_ 0 0 0 nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.5336608886719 3 355.533091 1063.57744 0.15125 5.3773E-05 0.41695 0.00014824 0.5682 0.00020201 355.53321794443855 27.561 0.23928 27.59 27.441 27.681 0.028664 23 10 3 0 0 0 0.1942 1 14297 14297 23.801 0 1 16927000 60895 1764 40633 41550 70958 70958 0.048196635660815446 SPTGHSLRPL 10 Unmodified _SPTGHSLRPL_ 0 0 0 nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5330810546875 3 355.533091 1063.57744 1.7825 0.00063373 -0.54133 -0.00019246 1.2411 0.00044127 355.5329275181232 30.727 0.38179 27.23 27.009 27.391 -3.497 37 17 3 0 0 0 0.1942 1 17314 17314 23.801 1.0261 1 45316000 60896 1764 40633 41550 70959 70959 0.048196635660815446 SPTGVAPA 8 Unmodified _SPTGVAPA_ 0 0 0 REV__ENST00000591745.1_1_19:2328269-2328565:-|nuORF REV__ENST00000591745.1_1_19:2328269-2328565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1873779296875 2 350.187229 698.359904 0.49897 0.00017473 0.34093 0.00011939 0.8399 0.00029412 350.187271805603 53.895 0.28339 53.895 53.728 54.011 0 18 12 2 0 0 0 0.78849 1 29926 29926 9.3474 0 1 1117700 + 60897 29165 40634 41551 70960 70960 -0.0013410663652848598 SPTGVAYFLGF 11 Unmodified _SPTGVAYFLGF_ 0 0 0 REV__ENSG00000204657|ENST00000641840|OR2H2 REV__ENSG00000204657|ENST00000641840|OR2H2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7945556640625 2 579.795132 1157.57571 NaN NaN NaN NaN NaN NaN NaN 85.99 1 85.99 85.49 86.49 0 0 0 0 0.93893 1 47640 47640 3.2813 0.97858 1 + 60898 24195 40635 41552 70961 70961 0.0032260975747249176 SPTKLDVTL 9 Unmodified _SPTKLDVTL_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2821960449219 2 487.281857 972.549162 -0.069988 -3.4104E-05 -0.8813 -0.00042944 -0.95129 -0.00046355 487.28122566573 48.936 0.21526 48.936 48.808 49.023 0 18 10 2 0 0 0 0.01958 1 26875 26875 63.961 9.187 1 1979400 60899 693 40636 41553 70962 70962 0.06178920866148019 SPTLQQRLG 9 Unmodified _SPTLQQRLG_ 0 0 0 ENST00000373625.7_1_1:32627592-32628053:+|nuORF ENST00000373625.7_1_1:32627592-32628053:+|nuORF ENST00000373625.7_1_1:32627592-32628053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2835693359375 2 500.282723 998.550893 0.45275 0.0002265 1.1655 0.00058309 1.6183 0.0008096 500.2828013090826 30.066 0.13261 29.986 29.895 30.027 -0.080429 7 4 2 0 0 0 0.45045 1 15605 15605 10.074 0 1 1627700 60900 12419 40637 41554 70963 70963 0.05155974674767094 SPTLQRNAL 9 Unmodified _SPTLQRNAL_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2821655273438 2 500.282723 998.550893 NaN NaN NaN NaN NaN NaN NaN 30.088 1 30.088 29.588 30.588 0 0 0 0 0.20153 1 15617 15617 30.637 0.41173 1 60901 1976 40638 41555 70964 70964 0.051559746747557256 SPTLQRNAL 9 Unmodified _SPTLQRNAL_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2831726074219 2 500.282723 998.550893 1.4882 0.00074451 0.40326 0.00020174 1.8914 0.00094626 500.28301795677027 33.787 0.30221 29.801 29.627 29.929 -3.9853 28 16 2 0 0 0 0.0082475 1 19337 19337 92.653 0 1 9005800 60902 1976 40638 41555 70965 70965 0.051559746747557256 SPTLQRNAL 9 Unmodified _SPTLQRNAL_ 0 0 0 nc|ENSG00000101557|P54578-2|USP14;nc|ENSG00000101557|P54578-3|USP14;ENSG00000101557|ENST00000261601|USP14 nc|ENSG00000101557|P54578-2|USP14 nc|ENSG00000101557|P54578-2|USP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.282723 998.550893 -0.37643 -0.00018832 0.17649 8.8294E-05 -0.19994 -0.00010003 500.28295356354266 30.039 0.10442 30.039 29.974 30.078 0 0.096706 -0.0002256 NaN 92.653 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 941270 60903 1976 40638 41555 0.051559746747557256 SPTNTVHMY 9 Oxidation (M) _SPTNTVHM(Oxidation (M))Y_ SPTNTVHM(1)Y SPTNTVHM(120)Y 0 0 1 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2373657226562 2 533.237124 1064.45969 1.148 0.00061215 -1.7924 -0.00095577 -0.64439 -0.00034361 533.2361394799985 21.274 0.25115 18.581 18.453 18.704 -2.693 26 19 3 0 0 0 0.0044708 1 11350 11350 118.89 78.945 1 4261600 60904 5063 40639 41556 70966 70966 927 -0.06995657084894447 SPTNTVHMY 9 Oxidation (M) _SPTNTVHM(Oxidation (M))Y_ SPTNTVHM(1)Y SPTNTVHM(86)Y 0 0 1 ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8 ENSG00000138592|ENST00000307179|USP8 ENSG00000138592|ENST00000307179|USP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2369384765625 2 533.237124 1064.45969 1.162 0.00061963 -0.81044 -0.00043216 0.35157 0.00018747 533.2367641949196 21.471 0.27263 18.736 18.662 18.935 -2.7348 47 22 3 0 0 0 0.0090524 2 11475 11475;11593 85.642 58.013 1 4852100 60905 5063 40639 41556 70967;70968 70967 927 -0.06995657084894447 SPTNYLQGL 9 Unmodified _SPTNYLQGL_ 0 0 0 nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7601623535156 2 496.756007 991.497461 0.83139 0.000413 2.5596 0.0012715 3.391 0.0016845 496.7575035870731 49.843 0.23493 49.451 49.353 49.588 -0.3923 19 11 2 0 0 0 0.16226 1 26810 26810 26.884 5.137 1 2736700 60906 5041 40640 41557 70969 70969 0.001371771722460835 SPTNYLQGL 9 Unmodified _SPTNYLQGL_ 0 0 0 nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN nc|ENSG00000138347|Q86TC9-2|MYPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7562866210938 2 496.756007 991.497461 1.0409 0.00051709 -1.2225 -0.0006073 -0.18158 -9.0201E-05 496.7556545308819 57.395 0.49566 51.367 51.096 51.592 -6.0275 32 26 2 0 0 0 0.03568 1 36707 36707 52.268 0 1 35322000 60907 5041 40640 41557 70970 70970 0.001371771722460835 SPTPPSTHV 9 Unmodified _SPTPPSTHV_ 0 0 0 ENST00000441384.5_1_3:47852163-47883242:+|nuORF;ENST00000445061.5_1_3:47852163-47868840:+|nuORF;ENST00000476446.5_1_3:47852163-47863615:+|nuORF;ENST00000492893.5_1_3:47852163-47866315:+|nuORF ENST00000441384.5_1_3:47852163-47883242:+|nuORF ENST00000441384.5_1_3:47852163-47883242:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7348327636719 2 461.735074 921.455596 0.63951 0.00029528 -1.3856 -0.00063979 -0.7461 -0.0003445 461.7343817526363 39.532 0.39534 39.532 39.362 39.758 0 45 18 3 0 0 0 0.087258 1 21154 21154 36.044 1.9418 1 13528000 60908 13396 40641 41558 70971 70971 -0.008273785162828062 SPTPSGLILF 10 Unmodified _SPTPSGLILF_ 0 0 0 ENST00000553612.5_1_14:81686964-81687150:-|nuORF ENST00000553612.5_1_14:81686964-81687150:-|nuORF ENST00000553612.5_1_14:81686964-81687150:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2922973632812 2 516.292225 1030.5699 0.27775 0.0001434 0.87727 0.00045293 1.155 0.00059633 516.2925692329468 88.401 0.38815 88.401 88.188 88.576 0 42 18 3 0 0 0 0.60623 2 48886 48886;48985 10.824 0 1 1090400 60909 15193 40642 41559 70972;70973 70972 0.05583511245822592 SPTPSQTPSF 10 Unmodified _SPTPSQTPSF_ 0 0 0 ENST00000335080.5_1_11:94706944-94707085:+|nuORF ENST00000335080.5_1_11:94706944-94707085:+|nuORF ENST00000335080.5_1_11:94706944-94707085:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1710815429688 3 350.169706 1047.48729 1.8994 0.00066511 1.5256 0.00053421 3.425 0.0011993 350.17034401793785 53.649 0.46806 47.845 47.659 48.127 -5.8042 42 29 2 0 0 0 0.62068 1 34018 34018 8.9762 5.3892 1 20508000 60910 11892 40643 41560 70974 70974 -0.0345543055300368 SPTPSQTPSF 10 Unmodified _SPTPSQTPSF_ 0 0 0 ENST00000335080.5_1_11:94706944-94707085:+|nuORF ENST00000335080.5_1_11:94706944-94707085:+|nuORF ENST00000335080.5_1_11:94706944-94707085:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 350.169706 1047.48729 0.41315 0.00014467 1.8516 0.00064836 2.2647 0.00079304 350.1703966244215 47.669 0.32822 47.63 47.455 47.783 -0.038643 -0.10732 0.00024205 NaN 8.9762 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 6379400 60911 11892 40643 41560 -0.0345543055300368 SPTPVFTTL 9 Unmodified _SPTPVFTTL_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7626342773438 2 481.7633 961.512048 0.41822 0.00020148 0.049423 2.381E-05 0.46764 0.00022529 481.7632159790905 68.726 0.21495 68.246 68.161 68.376 -0.48071 15 9 2 0 0 0 0.23158 1 37579 37579 20.454 8.8133 1 838150 60912 7924 40644 41561 70975 70975 0.029752493203773156 SPTQIGPSY 9 Unmodified _SPTQIGPSY_ 0 0 0 ENSG00000143970|ENST00000435504|ASXL2;nc|ENSG00000143970|Q76L83-2|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 ENSG00000143970|ENST00000435504|ASXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2363586425781 2 475.234907 948.455261 0.75666 0.00035959 -0.22085 -0.00010496 0.53581 0.00025464 475.2349179300632 36.561 0.40829 36.561 36.409 36.818 0 41 19 3 0 0 0 0.03568 1 19489 19489 52.268 25.385 1 8741600 60913 5571 40645 41562 70976 70976 -0.021027982361488284 SPTQPIQL 8 Unmodified _SPTQPIQL_ 0 0 0 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2481384277344 2 442.247818 882.481082 0.87112 0.00038525 -0.50607 -0.00022381 0.36506 0.00016145 442.24763511526737 51.289 0.43984 51.289 51.014 51.454 0 33 20 2 0 0 0 0.14054 1 28299 28299 88.904 7.2905 1 4805300 60914 4241 40646 41563 70977 70977 0.0351409600613124 SPTQVVSQL 9 Unmodified _SPTQVVSQL_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.763427734375 2 479.763832 957.513111 0.80201 0.00038478 -0.48912 -0.00023466 0.3129 0.00015012 479.7636647605871 47.734 0.3776 47.734 47.558 47.936 0 29 17 2 0 0 0 0.023481 1 26105 26105 60.074 12.325 1 6837100 60915 9846 40647 41564 70978 70978 0.032654636892857525 SPTQVVSQL 9 Unmodified _SPTQVVSQL_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 479.6964416503906 2 479.763832 957.513111 1.2149 0.00058288 1.0301 0.00049421 2.245 0.0010771 479.7635574065564 55.07 0.36046 49.149 48.989 49.35 -5.9211 30 22 2 0 0 0 0.12771 1 34994 34994 21.537 2.28 1 16373000 60916 9846 40647 41564 70979 70979 0.032654636892857525 SPTRSRKGPK 10 Unmodified _SPTRSRKGPK_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 371.5116577148438 3 371.887756 1112.64144 0.74814 0.00027822 1.1575 0.00043048 1.9057 0.0007087 371.8885009669636 23.613 1.0772 20.785 20.332 21.41 -2.8273 137 73 4 0 0 0 0.23966 1 13052 13052 0.56317 0 1 53970000 + 60917 19509 40648 41565 70980 70980 0.08962443723044089 SPTRTRWRWSH 11 Unmodified _SPTRTRWRWSH_ 0 0 0 REV__ENST00000411651.6_1_21:46226819-46228978:-|nuORF REV__ENST00000411651.6_1_21:46226819-46228978:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.9230346679688 3 490.588481 1468.74361 0.40209 0.00019726 -0.61869 -0.00030352 -0.2166 -0.00010626 490.92249772733584 33.776 0.18535 33.805 33.696 33.881 0.028934 11 7 2 0 0 0 0.71938 1 17803 17803 2.4348 2.0265 1 2113700 + 60918 26713 40649 41566 70981 70981 0.027991097946369337 SPTSAVDIF 9 Unmodified _SPTSAVDIF_ 0 0 0 ENSG00000134398|ENST00000256797|ERN2 ENSG00000134398|ENST00000256797|ERN2 ENSG00000134398|ENST00000256797|ERN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.738037109375 2 468.737283 935.460012 0.35328 0.0001656 0.08878 4.1615E-05 0.44206 0.00020721 468.73744473137367 65.469 0.35151 65.469 65.272 65.624 0 29 13 3 0 0 0 0.042911 1 36479 36479 48.346 25.197 1 2291100 60919 4605 40650 41567 70982 70982 -0.010299140933852868 SPTSAVDIF 9 Unmodified _SPTSAVDIF_ 0 0 0 ENSG00000134398|ENST00000256797|ERN2 ENSG00000134398|ENST00000256797|ERN2 ENSG00000134398|ENST00000256797|ERN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.4688110351562 1 936.467289 935.460012 0.12873 0.00012056 0.18689 0.00017502 0.31563 0.00029558 936.467375874129 65.467 0.1797 65.467 65.37 65.55 0 10 6 2 0 0 0 0.042911 1 36501 36501 48.346 25.197 1 528060 60920 4605 40650 41567 70983 70983 -0.010299140933852868 SPTSVLPSF 9 Unmodified _SPTSVLPSF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7470092773438 2 467.74765 933.480748 0.40443 0.00018917 -0.51808 -0.00024233 -0.11365 -5.3158E-05 467.74727535329885 70.966 0.32773 70.489 70.331 70.659 -0.47735 35 14 3 0 0 0 0.012148 1 38832 38832 74.423 26.077 1 1863200 60921 16096;16097 40651 41568 70984 70984 0.011346762862899595 SPTSVLPSF 9 Unmodified _SPTSVLPSF_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MSMS AL20221201_MKP_PDAC_01 4 467.7472229003906 2 467.74765 933.480748 NaN NaN NaN NaN NaN NaN NaN 78.076 1 71.9 71.4 72.4 -6.1757 0 0 0 0.023279 1 51092 51092 74.423 30.016 1 60922 16096;16097 40651 41568 70985 70985 0.011346762862899595 SPTTAFTVL 9 Unmodified _SPTTAFTVL_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7559814453125 2 468.755475 935.496398 0.063423 2.973E-05 -0.46563 -0.00021827 -0.40221 -0.00018854 468.7550773199867 70.176 0.22834 69.697 69.615 69.844 -0.47903 20 11 2 0 0 0 0.042911 1 38364 38364 48.346 18.121 1 2508600 60923 6726 40652 41569 70986 70986 0.026069628033155823 SPTTAFTVL 9 Unmodified _SPTTAFTVL_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5029296875 1 936.503674 935.496398 0.024991 2.3404E-05 -0.10446 -9.7831E-05 -0.079473 -7.4426E-05 936.5033902643574 70.176 0.17832 69.697 69.641 69.819 -0.47903 14 8 2 0 0 0 0.026094 1 38368 38368 57.471 35.725 1 809550 60924 6726 40652 41569 70987 70987 0.026069628033155823 SPTTAFTVL 9 Unmodified _SPTTAFTVL_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 468.755475 935.496398 0.72524 0.00033996 0.22011 0.00010318 0.94535 0.00044314 468.75513370145705 76.096 0.2499 69.921 69.736 69.986 -6.1757 0.11199 0.00044754 NaN 48.346 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5593100 60925 6726 40652 41569 0.026069628033155823 SPTTIQVTY 9 Unmodified _SPTTIQVTY_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43;ENST00000483282.1_1_1:154179931-154180985:-|nuORF nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2634582519531 2 505.263665 1008.51278 0.6393 0.00032301 -1.4658 -0.00074062 -0.82651 -0.00041761 505.26310041469014 48.023 0.31866 48.023 47.831 48.149 0 46 15 4 0 0 0 0.015445 1 26301 26301 68.081 28.123 1 26908000 60926 5533 40653 41570 70988 70988 0.008860439694444722 SPTTIQVTY 9 Unmodified _SPTTIQVTY_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-4|C1orf43;ENST00000483282.1_1_1:154179931-154180985:-|nuORF nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.26171875 2 505.263665 1008.51278 1.1207 0.00056625 -1.6584 -0.00083793 -0.53771 -0.00027168 505.2628556597597 55.488 0.44907 49.567 49.317 49.766 -5.9211 53 27 2 0 0 0 0.015445 2 35242 35242;35377 68.081 28.123 1 57244000 60927 5533 40653 41570 70989;70990 70989 0.008860439694444722 SPTTLYDRY 9 Unmodified _SPTTLYDRY_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2;ENST00000562837.1_1_16:53500972-53504120:+|nuORF ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2410278320312 2 558.272021 1114.52949 NaN NaN NaN NaN NaN NaN NaN 35.92 1 35.92 35.42 36.42 0 0 0 0 0.39118 1 19019 19019 20.415 8.7742 1 60928 2142 40654 41571 70991 70991 -0.023194551446067635 SPTVLSTSF 9 Unmodified _SPTVLSTSF_ 0 0 0 REV__ENSG00000184956|ENST00000421673|MUC6 REV__ENSG00000184956|ENST00000421673|MUC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.4879760742188 1 938.482939 937.475663 0.3102 0.00029112 -0.34559 -0.00032433 -0.035387 -3.321E-05 938.4824029490131 59.589 0.35333 59.589 59.4 59.754 0 43 15 4 0 0 0 0.55144 1 33199 33199 4.3292 1.7518 1 16037000 + 60929 23455 40655 41572 70992 70992 0.00442372423674442 SPVALFQQL 9 Unmodified _SPVALFQQL_ 0 0 0 ENSG00000049239|ENST00000377403|H6PD;nc|ENSG00000049239|O95479-2|H6PD ENSG00000049239|ENST00000377403|H6PD ENSG00000049239|ENST00000377403|H6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.7859191894531 2 501.784567 1001.55458 1.1143 0.00055913 0.96969 0.00048658 2.084 0.0010457 501.7849473450863 82.561 0.31331 82.623 82.474 82.788 0.062004 18 11 2 0 0 0 0.013323 1 45687 45687 71.134 37.031 1 3320300 60930 706 40656 41573 70993 70993 0.05386644448606148 SPVALNVQY 9 Unmodified _SPVALNVQY_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22 nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.767578125 2 495.766374 989.518196 0.89763 0.00044501 -0.89107 -0.00044176 0.0065547 3.2496E-06 495.76637721240775 54.414 0.25738 54.414 54.271 54.528 0 19 11 2 0 0 0 0.20428 1 30230 30230 22.736 13.353 1 1490700 60931 456 40657 41574 70994 70994 0.023017675519099612 SPVALNVQY 9 Unmodified _SPVALNVQY_ 0 0 0 nc|ENSG00000012124|P20273-4|CD22;ENSG00000012124|ENST00000085219|CD22;nc|ENSG00000012124|P20273-2|CD22;nc|ENSG00000012124|P20273-5|CD22;nc|ENSG00000012124|P20273-3|CD22 nc|ENSG00000012124|P20273-4|CD22 nc|ENSG00000012124|P20273-4|CD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7673034667969 2 495.766374 989.518196 0.31224 0.0001548 0.59258 0.00029378 0.90483 0.00044858 495.76674800750646 55.01 0.28276 54.532 54.409 54.691 -0.47798 21 13 2 0 0 0 0.20428 1 29851 29851 22.736 9.6938 1 1428100 60932 456 40657 41574 70995 70995 0.023017675519099612 SPVAQSQEF 9 Unmodified _SPVAQSQEF_ 0 0 0 nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 nc|ENSG00000108389|Q9NYA4|MTMR4 nc|ENSG00000108389|Q9NYA4|MTMR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7381286621094 2 496.737814 991.461075 -0.39161 -0.00019453 0.61845 0.00030721 0.22684 0.00011268 496.7382867352068 33.793 0.20095 33.793 33.688 33.888 0 16 9 2 0 0 0 0.07916 1 17763 17763 37.974 21.032 1 2036400 60933 2564 40658 41575 70996 70996 -0.03499699724466154 SPVASPVHTG 10 Unmodified _SPVASPVHTG_ 0 0 0 ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-8|ANK1;IKBKB-ANK1|4|fusion;IKBKB-ANK1|1|fusion;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;IKBKB-ANK1|2|fusion;IKBKB-ANK1|3|fusion;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;IKBKB-ANK1|14|fusion;IKBKB-ANK1|11|fusion;nc|ENSG00000029534|P16157-16|ANK1;nc|ENSG00000029534|P16157-5|ANK1;IKBKB-ANK1|12|fusion;IKBKB-ANK1|13|fusion;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-10|ANK1;IKBKB-ANK1|9|fusion;IKBKB-ANK1|6|fusion;IKBKB-ANK1|7|fusion;IKBKB-ANK1|8|fusion;IKBKB-ANK1|10|fusion;IKBKB-ANK1|5|fusion;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;IKBKB-ANK1|15|fusion;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-15|ANK1 ENST00000524227.5_1_8:41525962-41555361:-|nuORF ENST00000524227.5_1_8:41525962-41555361:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2481079101562 2 476.248349 950.482145 0.45198 0.00021526 0.50162 0.0002389 0.9536 0.00045415 476.24860383946674 27.974 0.29246 24.826 24.691 24.983 -3.1482 25 15 2 0 0 0 0.095098 1 15516 15516 47.749 0.1543 1 12483000 60934 579 40659 41576 70997 70997 0.004923103750456903 SPVAWQRCWR 10 Carbamidomethyl (C) _SPVAWQRC(Carbamidomethyl (C))WR_ SPVAWQRC(1)WR SPVAWQRC(59)WR 0 1 0 REV__ENST00000395648.7_2_11:44954502-44954595:-|nuORF REV__ENST00000395648.7_2_11:44954502-44954595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.3326416015625 2 673.332756 1344.65096 0.55996 0.00037704 -1.1333 -0.00076306 -0.5733 -0.00038602 673.8334821620157 54.577 0.23654 48.712 48.542 48.779 -5.8653 26 14 2 0 0 0 0.04925 1 34619 34619 58.679 32.411 1 23704000 + 60935 26479 40660 41577 70998 70998 1058 -0.007581112631214637 SPVCEKTLY 9 Carbamidomethyl (C) _SPVC(Carbamidomethyl (C))EKTLY_ SPVC(1)EKTLY SPVC(97)EKTLY 0 1 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7689208984375 2 548.7708 1095.52705 1.1172 0.0006131 -1.5836 -0.00086906 -0.46642 -0.00025596 548.7703755627093 36.059 0.35851 31.866 31.678 32.037 -4.1928 54 21 3 0 0 0 0.0082981 1 20973 20973 96.936 38.257 1 13366000 60936 1378 40661 41578 70999 70999 129 -0.016896268739174047 SPVDLTYTY 9 Unmodified _SPVDLTYTY_ 0 0 0 nc|ENSG00000023228|P28331-3|NDUFS1;nc|ENSG00000023228|P28331-4|NDUFS1;nc|ENSG00000023228|P28331-5|NDUFS1;ENSG00000023228|ENST00000233190|NDUFS1;nc|ENSG00000023228|P28331-2|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 nc|ENSG00000023228|P28331-3|NDUFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7557983398438 2 529.755672 1057.49679 -0.112 -5.9333E-05 -0.057564 -3.0495E-05 -0.16956 -8.9828E-05 529.7557871485548 56.082 0.25056 56.082 55.953 56.204 0 24 11 3 0 0 0 0.012148 1 31173 31173 74.423 38.379 1 3944500 60937 538 40662 41579 71000 71000 -0.02965662267456537 SPVDLYILM 9 Oxidation (M) _SPVDLYILM(Oxidation (M))_ SPVDLYILM(1) SPVDLYILM(67) 0 0 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7775268554688 2 533.778093 1065.54163 0.93805 0.00050071 -1.3445 -0.00071766 -0.40643 -0.00021695 533.7774565110388 79.791 0.43713 79.301 79.096 79.533 -0.48932 48 18 3 0 0 0 0.016184 2 43755 43654;43755 67.344 38.857 1 3577000 60938 4412 40663 41580 71001;71002 71002 802 0.011484452742024587 SPVDSVLFY 9 Unmodified _SPVDSVLFY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7617797851562 2 513.760758 1025.50696 0.22894 0.00011762 -0.68756 -0.00035324 -0.45861 -0.00023562 513.7603238357349 77.41 0.66659 77.41 77.105 77.771 0 158 43 5 0 0 0 0.016184 3 42931 42931;43033;43138 67.344 37.119 1 230630000 60939 7707 40664 41581 71003;71004;71005 71003 -0.00477054542238875 SPVDSVLFY 9 Unmodified _SPVDSVLFY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7603759765625 2 513.760758 1025.50696 -0.93076 -0.00047819 0.20656 0.00010612 -0.7242 -0.00037206 513.7607924589076 77.886 0.6591 77.404 77.101 77.76 -0.4826 173 42 5 0 0 0 0.010877 3 42634 42535;42634;42741 77.984 47.76 1 317750000 60940 7707 40664 41581 71006;71007;71008 71007 -0.00477054542238875 SPVDSVLFY 9 Unmodified _SPVDSVLFY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7611694335938 2 513.760758 1025.50696 0.3387 0.00017401 0.19604 0.00010072 0.53475 0.00027473 513.7608250481456 77.4 0.4533 77.45 77.198 77.652 0.050102 56 18 4 0 0 0 0.010877 2 42748 42648;42748 77.984 47.76 1 22945000 60941 7707 40664 41581 71009;71010 71010 -0.00477054542238875 SPVDSVLFY 9 Unmodified _SPVDSVLFY_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.760986328125 2 513.760758 1025.50696 0.1127 5.7903E-05 0.50842 0.0002612 0.62112 0.00031911 513.7609404584908 85.462 0.91994 79.286 78.909 79.829 -6.1757 202 55 5 0 0 0 0.010877 4 56288 56152;56288;56423;56550 77.984 47.76 1 1424900000 60942 7707 40664 41581 71011;71012;71013;71014 71012 -0.00477054542238875 SPVDVLQIF 9 Unmodified _SPVDVLQIF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19925567-19931685:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.2847900390625 2 509.2844 1016.55425 1.1585 0.00059002 -1.8898 -0.00096244 -0.73127 -0.00037242 509.2843019613492 100.77 0.42011 94.593 94.503 94.923 -6.1757 51 26 4 0 0 0 0.0090851 1 67462 67462 85.357 43.262 1 112970000 60943 2059 40665 41582 71015 71015 0.046632247287675455 SPVDVLQIF 9 Unmodified _SPVDVLQIF_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4;ENST00000446672.2_1_13:19925567-19931685:+|nuORF ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 509.2844 1016.55425 2.2472 0.0011445 -2.5418 -0.0012945 -0.29457 -0.00015002 509.28288493251847 94.617 0.26001 94.631 94.435 94.695 0.014244 0.019367 -0.0003952 NaN 85.357 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 761580 60944 2059 40665 41582 0.046632247287675455 SPVEAVFSY 9 Unmodified _SPVEAVFSY_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7445373535156 2 499.745108 997.475663 -0.091568 -4.5761E-05 0.0060753 3.0361E-06 -0.085493 -4.2725E-05 499.74497379889084 66.102 0.30085 65.618 65.456 65.757 -0.48323 22 15 2 0 0 0 0.1773 1 36076 36076 25.399 10.561 1 3680600 60945 2734 40666 41583 71016 71016 -0.02317627576326231 SPVEAVFSY 9 Unmodified _SPVEAVFSY_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.74609375 2 499.745108 997.475663 1.0456 0.00052253 2.1765 0.0010877 3.2221 0.0016102 500.2457142948238 72.484 0.4416 66.308 66.141 66.583 -6.1757 51 22 3 0 0 0 0.022193 2 47453 47388;47453 61.357 34.474 1 30720000 60946 2734 40666 41583 71017;71018 71018 -0.02317627576326231 SPVEELLTM 9 Oxidation (M) _SPVEELLTM(Oxidation (M))_ SPVEELLTM(1) SPVEELLTM(64) 0 0 1 ENSG00000106052|ENST00000396319|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1 ENSG00000106052|ENST00000396319|TAX1BP1 ENSG00000106052|ENST00000396319|TAX1BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7573852539062 2 517.757358 1033.50016 0.37576 0.00019455 -0.82544 -0.00042738 -0.44967 -0.00023282 517.7573119039139 61.4 0.51794 61.4 61.123 61.641 0 61 23 4 0 0 0 0.019303 1 34248 34248 64.236 44.797 1 4028100 60947 2395 40667 41584 71019 71019 411 -0.015247354850998818 SPVEFLAP 8 Unmodified _SPVEFLAP_ 0 0 0 REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.4526977539062 1 859.455996 858.448719 0.086622 7.4448E-05 -0.71318 -0.00061295 -0.62656 -0.0005385 859.4552412977363 77.49 0.50609 77.49 77.265 77.771 0 111 36 4 0 0 0 0.19755 1 43000 43000 70.865 7.3017 1 37147000 + 60948 18958 40668 41585 71020 71020 0.013833086031468156 SPVEFLAP 8 Unmodified _SPVEFLAP_ 0 0 0 REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 861.4620971679688 1 859.455996 858.448719 -0.074723 -6.4221E-05 0.5318 0.00045706 0.45708 0.00039284 859.4563607407331 85.213 0.76038 79.038 78.735 79.495 -6.1757 147 46 4 0 0 0 0.5284 2 55977 55977;56022 32.117 10.573 1 323110000 + 60949 18958 40668 41585 71021;71022 71021 0.013833086031468156 SPVEFLAP 8 Unmodified _SPVEFLAP_ 0 0 0 REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2314453125 2 430.231636 858.448719 0.20051 8.6264E-05 0.26171 0.0001126 0.46222 0.00019886 430.2316674432771 85.213 0.57495 79.037 78.803 79.378 -6.1757 57 35 2 0 0 0 0.5953 1 56158 56158 26.341 1.6674 1 28540000 + 60950 18958 40668 41585 71023 71023 0.013833086031468156 SPVEFLAP 8 Unmodified _SPVEFLAP_ 0 0 0 REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 429.9209289550781 2 430.231636 858.448719 0.20051 8.6264E-05 0.26171 0.0001126 0.46222 0.00019886 430.2316674432771 85.213 0.57495 79.037 78.803 79.378 -6.1757 57 35 2 0 0 0 8.7369 1 56109 56109 26.341 8.2063 1 28540000 + 60951 18958 40668 41585 71024 71024 0.013833086031468156 SPVEFYKFL 9 Unmodified _SPVEFYKFL_ 0 0 0 REV__ENSG00000131966|ENST00000254286|ACTR10 REV__ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.30029296875 2 565.30005 1128.58555 0.7334 0.00041459 0.47154 0.00026656 1.2049 0.00068116 565.2999264778671 68.174 0.28441 67.692 67.615 67.899 -0.48218 32 12 3 0 0 0 0.32871 1 37360 37360 15.847 6.4641 1 4394100 + 60952 19822 40669 41586 71025 71025 0.026397977628448643 SPVEIQNPY 9 Unmodified _SPVEIQNPY_ 0 0 0 TP53BP2-CAPN2|1|fusion;TP53BP2-CAPN2|2|fusion;nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2 TP53BP2-CAPN2|1|fusion TP53BP2-CAPN2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.761474609375 2 523.761289 1045.50803 0.97192 0.00050905 -0.050005 -2.6191E-05 0.92191 0.00048286 523.7610605536807 46.031 0.24882 46.031 45.9 46.149 0 17 11 2 0 0 0 0.0082281 1 25143 25143 92.822 28.586 1 3114500 60953 30197 40670 41587 71026 71026 -0.01290840173351171 SPVEPAEP 8 Unmodified _SPVEPAEP_ 0 0 0 ENST00000541233.1_1_12:6554564-6560555:+|nuORF;ENSG00000139193|ENST00000266557|CD27 ENST00000541233.1_1_12:6554564-6560555:+|nuORF ENST00000541233.1_1_12:6554564-6560555:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2380065917969 2 413.203076 824.391599 NaN NaN NaN NaN NaN NaN NaN 77.916 1 77.434 76.934 77.934 -0.4826 0 0 0 0.80403 1 42663 42663 23.148 3.7094 1 60954 5135 40671 41588 71027 71027 -0.02762158673237991 SPVERKHML 9 Unmodified _SPVERKHML_ 0 0 0 nc|ENSG00000102890|Q96BJ8-2|ELMO3;ENSG00000102890|ENST00000393997|ELMO3;nc|ENSG00000102890|Q96BJ8-3|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 nc|ENSG00000102890|Q96BJ8-2|ELMO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2057495117188 3 366.202576 1095.5859 1.2658 0.00046353 0.088106 3.2265E-05 1.3539 0.0004958 366.202867514462 18.185 0.52506 15.563 15.243 15.768 -2.6215 141 38 5 0 0 0 0.39143 1 9419 9419 12.873 2.722 1 22524000 60955 2075 40672 41589 71028 71028 0.04192894211064413 SPVESFIAF 9 Unmodified _SPVESFIAF_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7579345703125 2 498.755475 995.496398 0.36887 0.00018398 1.4171 0.00070681 1.786 0.00089078 498.7562838174841 86.085 0.37892 85.582 85.366 85.745 -0.50318 33 14 3 0 0 0 0.2143 1 47076 47076 21.747 9.2151 1 1437100 60956 9064 40673 41590 71029 71029 -0.001530371966509847 SPVESFIAF 9 Unmodified _SPVESFIAF_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.5069580078125 1 996.503674 995.496398 0.38502 0.00038367 2.1224 0.002115 2.5075 0.0024987 996.5056002408567 86.07 0.28121 85.567 85.366 85.647 -0.50319 14 10 2 0 0 0 0.06187 1 47096 47096 42.095 20.348 1 331310 60957 9064 40673 41590 71030 71030 -0.001530371966509847 SPVESVLF 8 Unmodified _SPVESVLF_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 877.4708251953125 1 877.466561 876.459284 -0.07471 -6.5555E-05 1.8617 0.0016336 1.787 0.001568 877.4680401988912 71.806 0.30728 71.33 71.192 71.499 -0.47609 18 11 2 0 0 0 0.28922 2 39273 39273;39383 56.541 13.573 1 979810 60958 8363 40674 41591 71031;71032 71031 0.016112912575863447 SPVESVLFY 9 Unmodified _SPVESVLFY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7676391601562 2 520.768583 1039.52261 -0.9086 -0.00047317 -0.74372 -0.00038731 -1.6523 -0.00086048 520.7680083082466 77.961 1.4336 77.478 77.166 78.599 -0.4826 275 76 6 0 0 0 0.010877 5 42671 42567;42671;42778;42885;42995 77.984 47.76 1 1230200000 60959 8363 40675 41592 71033;71034;71035;71036;71037 71034 0.004432319748275404 SPVESVLFY 9 Unmodified _SPVESVLFY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7684936523438 2 520.768583 1039.52261 0.084015 4.3752E-05 0.32229 0.00016784 0.40631 0.00021159 520.7686870838852 77.453 0.47678 77.503 77.272 77.748 0.05011 72 19 5 0 0 0 0.010877 2 42790 42684;42790 77.984 33.577 1 87459000 60960 8363 40675 41592 71038;71039 71039 0.004432319748275404 SPVESVLFY 9 Unmodified _SPVESVLFY_ 0 0 0 ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7684936523438 2 520.768583 1039.52261 0.20847 0.00010857 -0.42104 -0.00021927 -0.21257 -0.0001107 520.7681014063132 85.22 1.3608 79.045 78.636 79.997 -6.1757 285 80 5 0 0 0 0.010877 6 56023 55895;56023;56151;56287;56424;56554 77.984 33.577 1 4765700000 60961 8363 40675 41592 71040;71041;71042;71043;71044;71045 71041 0.004432319748275404 SPVFKTVL 8 Unmodified _SPVFKTVL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.7721557617188 2 445.770929 889.527304 1.569 0.00069943 -0.25773 -0.00011489 1.3113 0.00058455 445.77050929797605 58.625 0.40792 52.551 52.371 52.779 -6.0745 34 22 2 0 0 0 0.19235 1 37561 37561 72.968 3.863 1 10672000 60962 3800 40676 41593 71046 71046 0.07812160908224541 SPVFKTVL 8 Unmodified _SPVFKTVL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 445.770929 889.527304 0.34704 0.0001547 1.0766 0.0004799 1.4236 0.0006346 445.7712569534658 53.35 0.22193 52.898 52.783 53.005 -0.45173 0.13417 0.00045373 NaN 72.968 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1534600 60963 3800 40676 41593 0.07812160908224541 SPVFKTVL 8 Unmodified _SPVFKTVL_ 0 0 0 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 ENSG00000124571|ENST00000265351|XPO5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 445.770929 889.527304 0.74118 0.00033039 1.0668 0.00047554 1.808 0.00080593 445.77099589034316 52.906 0.35928 52.842 52.664 53.024 -0.063423 0.078522 0.00044502 NaN 72.968 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2077200 60964 3800 40676 41593 0.07812160908224541 SPVFMQPVY 9 Oxidation (M) _SPVFM(Oxidation (M))QPVY_ SPVFM(1)QPVY SPVFM(61)QPVY 0 0 1 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2625122070312 2 542.26261 1082.51067 -0.17171 -9.3114E-05 -0.26966 -0.00014623 -0.44138 -0.00023934 542.262534345598 54.541 0.37865 54.074 53.882 54.261 -0.46664 60 19 5 0 0 0 0.022193 1 29583 29583 61.357 27.255 1 42129000 60965 6810 40677 41594 71047 71047 1179 -0.02728708040035599 SPVFMQPVY 9 Oxidation (M) _SPVFM(Oxidation (M))QPVY_ SPVFM(1)QPVY SPVFM(67)QPVY 0 0 1 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.262939453125 2 542.26261 1082.51067 -0.034832 -1.8888E-05 0.70849 0.00038419 0.67365 0.0003653 542.2629384483919 54.154 0.35828 54.087 53.941 54.299 -0.066936 37 17 3 0 0 0 0.016184 1 29389 29389 67.344 31.3 1 5394400 60966 6810 40677 41594 71048 71048 1179 -0.02728708040035599 SPVFMQPVY 9 Oxidation (M) _SPVFM(Oxidation (M))QPVY_ SPVFM(1)QPVY SPVFM(85)QPVY 0 0 1 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2631225585938 2 542.26261 1082.51067 1.0143 0.00055004 -0.29572 -0.00016036 0.71862 0.00038968 542.2627607570934 61.605 0.42828 55.429 55.208 55.637 -6.1757 46 21 3 0 0 0 0.0090948 2 39609 39609;39735 85.272 36.926 1 89339000 60967 6810 40677 41594 71049;71050 71049 1179 -0.02728708040035599 SPVFMQPVY 9 Unmodified _SPVFMQPVY_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2649536132812 2 534.265153 1066.51575 0.80716 0.00043124 -0.38135 -0.00020374 0.4258 0.00022749 534.264925384428 75.193 0.56367 69.017 68.72 69.284 -6.1757 90 30 4 0 0 0 0.013323 3 49014 49014;49141;49265 71.134 47.985 1 55523000 60968 6810 40677 41595 71051;71052;71053 71051 -0.014844041774040306 SPVFNHSLY 9 Unmodified _SPVFNHSLY_ 0 0 0 nc|ENSG00000099917|Q96RN5-3|MED15;nc|ENSG00000099917|Q96RN5-2|MED15;ENSG00000099917|ENST00000263205|MED15;ENST00000492381.5_1_22:20909161-20940988:+|nuORF;ENST00000473244.5_1_22:20936789-20940988:+|nuORF;ENST00000489651.5_1_22:20929276-20940988:+|nuORF;ENST00000493216.1_1_22:20939162-20939420:+|nuORF nc|ENSG00000099917|Q96RN5-3|MED15 nc|ENSG00000099917|Q96RN5-3|MED15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2647705078125 2 532.263999 1062.51345 -0.039188 -2.0858E-05 0.79638 0.00042388 0.75719 0.00040302 532.2641686404497 45.493 0.29744 45.169 45.059 45.357 -0.32425 31 16 3 0 0 0 0.0061223 1 24395 24395 114.2 74.244 1 26914000 60969 1720 40678 41596 71054 71054 -0.01531116590831516 SPVFPLRW 8 Unmodified _SPVFPLRW_ 0 0 0 ENST00000488767.1_1_6:33381480-33381609:+|nuORF ENST00000488767.1_1_6:33381480-33381609:+|nuORF ENST00000488767.1_1_6:33381480-33381609:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.281005859375 2 501.281995 1000.54944 0.45238 0.00022677 -0.53721 -0.00026929 -0.084824 -4.2521E-05 501.28063877261866 38.631 0.51476 34.263 34.012 34.527 -4.3689 103 32 4 0 0 0 0.6895 1 22725 22725 18.135 1.0221 1 101280000 60970 14228 40679 41597 71055 71055 0.04918385376652168 SPVFTSRSAA 10 Unmodified _SPVFTSRSAA_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20221201_MKP_PDAC_01 4 511.7669372558594 2 511.766906 1021.51926 NaN NaN NaN NaN NaN NaN NaN 28.901 1 25.62 25.12 26.12 -3.2811 0 0 0 0.016301 1 16159 16159 73.196 33.247 1 + 60971 199 40680 41598 71056 71056 0.009359819208157205 SPVFTSRSAAF 11 Unmodified _SPVFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2998657226562 2 585.301113 1168.58767 0.097246 5.6918E-05 -1.1797 -0.00069047 -1.0824 -0.00063355 585.3004465787178 45.987 0.28572 45.662 45.527 45.813 -0.32425 22 14 2 0 0 0 0.0078265 1 24580 24580 70.496 26.723 1 7890700 + 60972 199 40681 41599 71057 71057 0.010122265006657472 SPVFTSRSAAF 11 Unmodified _SPVFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3011474609375 2 585.301113 1168.58767 0.44168 0.00025852 -0.20133 -0.00011784 0.24036 0.00014068 585.300990267473 45.713 0.37378 45.685 45.49 45.864 -0.028015 62 18 4 0 0 0 0.0017085 2 24612 24501;24612 80.896 42.104 1 96771000 + 60973 199 40681 41599 71058;71059 71059 0.010122265006657472 SPVFTSRSAAF 11 Unmodified _SPVFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.802490234375 2 585.301113 1168.58767 0.82927 0.00048537 -0.25469 -0.00014907 0.57458 0.00033631 585.3009020499813 51.308 0.54715 45.659 45.397 45.945 -5.649 102 33 4 0 0 0 1.725E-06 3 32149 32149;32273;32395 102.55 52.994 1 427130000 + 60974 199 40681 41599 71060;71061;71062 71060 0.010122265006657472 SPVFVIVGF 9 Unmodified _SPVFVIVGF_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 964.552734375 1 964.550231 963.542954 2.7447 0.0026474 0.71496 0.00068961 3.4596 0.003337 964.5506786221921 99.966 0.081497 99.929 99.88 99.962 -0.036301 4 2 2 0 0 0 0.016184 1 55537 55537 67.344 39.171 1 3447200 60975 7578 40682 41600 71063 71063 0.059724474253016524 SPVFVIVGF 9 Unmodified _SPVFVIVGF_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1;nc|ENSG00000167130|Q86YN1-2|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5506591796875 1 964.550231 963.542954 1.0286 0.0009921 -1.0305 -0.00099401 -0.0019827 -1.9124E-06 964.5494836516132 101.19 0.090141 95.011 94.956 95.046 -6.1757 7 5 2 0 0 0 0.010877 1 67861 67861 77.984 41.94 1 17021000 60976 7578 40682 41600 71064 71064 0.059724474253016524 SPVGRWRFCI 10 Unmodified _SPVGRWRFCI_ 0 0 0 nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3 nc|ENSG00000196632|Q9BYP7-3|WNK3 nc|ENSG00000196632|Q9BYP7-3|WNK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.7135620117188 3 407.550087 1219.62843 -0.67667 -0.00027578 2.3441 0.00095532 1.6674 0.00067955 407.5512418792999 27.094 0.16273 27.094 26.992 27.155 0 14 7 2 0 0 0 0.23195 1 13936 13936 5.7834 0 1 1973500 60977 9851 40683 41601 71065 71065 0.02740289339294577 SPVGSAQDLQL 11 Unmodified _SPVGSAQDLQL_ 0 0 0 REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7909545898438 2 557.790578 1113.5666 0.63416 0.00035373 -2.4557 -0.0013697 -1.8215 -0.001016 557.7897031357385 45.047 0.30553 40.195 40.036 40.342 -4.852 29 19 2 0 0 0 0.42108 1 27526 27526 20.415 3.3016 1 8748800 + 60978 27786 40684 41602 71066 71066 0.014362164011345158 SPVHFSWDIYF 11 Unmodified _SPVHFSWDIYF_ 0 0 0 ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5551452636719 3 466.555672 1396.64519 -0.62525 -0.00029171 -0.6004 -0.00028012 -1.2257 -0.00057184 466.55581603891824 15.024 0.077145 15.009 14.962 15.039 -0.014067 62 22 4 0 0 0 0.73237 1 7335 7335 1.2148 0.10508 1 1542700 60979 14151 40685 41603 71067 71067 -0.03726931293772395 SPVHFSWDIYF 11 Unmodified _SPVHFSWDIYF_ 0 0 0 ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.8901672363281 3 466.555672 1396.64519 0.12281 5.7299E-05 -0.85517 -0.00039899 -0.73236 -0.00034169 466.55551386059966 15.307 0.23397 12.779 12.681 12.915 -2.5273 149 43 4 0 0 0 0.631 1 7802 7802 9.7643 1.4778 1 19711000 60980 14151 40685 41603 71068 71068 -0.03726931293772395 SPVHFSWDIYF 11 Unmodified _SPVHFSWDIYF_ 0 0 0 ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF ENST00000484394.5_1_X:152720163-152720565:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 699.3297729492188 2 699.32987 1396.64519 NaN NaN NaN NaN NaN NaN NaN 15.369 1 12.842 12.342 13.342 -2.5273 0 0 0 0.93694 1 7879 7879 5.7319 2.4505 1 60981 14151 40685 41603 71069 71069 -0.03726931293772395 SPVHLQILL 9 Unmodified _SPVHLQILL_ 0 0 0 nc|ENSG00000128284|O95236|APOL3;ENSG00000128284|ENST00000424878|APOL3 nc|ENSG00000128284|O95236|APOL3 nc|ENSG00000128284|O95236|APOL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3163146972656 2 510.316035 1018.61752 0.52329 0.00026704 -0.39441 -0.00020128 0.12887 6.5766E-05 510.3159470514435 75.324 0.31507 74.847 74.696 75.011 -0.47714 41 17 3 0 0 0 0.06294 1 41214 41214 41.84 9.5341 1 4532000 60982 4058 40686 41604 71070 71070 0.1089521023668567 SPVHPQQAF 9 Unmodified _SPVHPQQAF_ 0 0 0 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7558898925781 2 505.756341 1009.49813 -0.01124 -5.6845E-06 -0.62993 -0.00031859 -0.64117 -0.00032428 505.7560609202666 29.125 0.36454 29.125 28.943 29.308 0 31 17 2 0 0 0 0.0090948 1 15039 15039 85.272 45.322 1 16451000 60983 618 40687 41605 71071 71071 -0.006239833880499646 SPVHPQQAF 9 Unmodified _SPVHPQQAF_ 0 0 0 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7561950683594 2 505.756341 1009.49813 0.20557 0.00010397 -0.32471 -0.00016422 -0.11914 -6.0258E-05 505.75618228525707 29.141 0.24282 29.079 28.921 29.164 -0.062159 18 10 2 0 0 0 0.07087 1 15041 15041 39.95 9.7249 1 6284800 60984 618 40687 41605 71072 71072 -0.006239833880499646 SPVHPQQAF 9 Unmodified _SPVHPQQAF_ 0 0 0 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 ENSG00000035862|ENST00000262768|TIMP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7567749023438 2 505.756341 1009.49813 0.54248 0.00027436 0.05952 3.0103E-05 0.602 0.00030447 505.7561605377157 32.796 0.38242 28.939 28.732 29.115 -3.8562 37 20 2 0 0 0 0.024882 1 18660 18660 58.679 20.528 1 58097000 60985 618 40687 41605 71073 71073 -0.006239833880499646 SPVIHPPVSY 10 Unmodified _SPVIHPPVSY_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7977294921875 2 548.295299 1094.57605 0.5436 0.00029805 0.3417 0.00018735 0.8853 0.0004854 548.2953073435094 47.785 0.51252 47.433 47.042 47.555 -0.3526 63 24 3 0 0 0 4.814E-06 2 25655 25549;25655 129.77 97.467 1 8905100 60986 1058 40688 41606 71074;71075 71075 0.03254029477329823 SPVIQKGDKL 10 Unmodified _SPVIQKGDKL_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2182006835938 3 362.21688 1083.62881 NaN NaN NaN NaN NaN NaN NaN 14.989 1 14.994 14.494 15.494 0.0057774 0 0 0 0.71851 1 7453 7453 9.544 0 1 + 60987 21279 40689 41607 71076 71076 0.09033987540146882 SPVLHELTF 9 Unmodified _SPVLHELTF_ 0 0 0 ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.783203125 2 521.782025 1041.5495 -0.20201 -0.0001054 0.33747 0.00017609 0.13546 7.0683E-05 521.7827697435333 61.442 0.21436 60.953 60.858 61.072 -0.48932 21 9 3 0 0 0 0.12424 1 33464 33464 30.637 12.49 1 1618000 60988 4868 40690 41608 71077 71077 0.030383405859765844 SPVNIHPSY 9 Unmodified _SPVNIHPSY_ 0 0 0 nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU nc|ENSG00000147642|Q9NX95-5|SYBU nc|ENSG00000147642|Q9NX95-5|SYBU MSMS AL20221201_MKP_PDAC_01 4 507.2554931640625 2 507.256174 1012.49779 NaN NaN NaN NaN NaN NaN NaN 40.276 1 35.747 35.247 36.247 -4.5294 0 0 0 0.00054139 1 24036 24036 136.39 77.713 1 60989 5870 40691 41609 71078 71078 -0.007954031079179913 SPVNPDPV 8 Unmodified _SPVNPDPV_ 0 0 0 nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7108459472656 2 412.711068 823.407583 0.02405 9.9259E-06 0.039268 1.6206E-05 0.063319 2.6132E-05 412.7109205890999 58.907 0.32167 58.907 58.723 59.045 0 24 14 2 0 0 0 0.61462 1 32770 32770 24.674 0 1 2424300 60990 1261 40692 41610 71079 71079 -0.011184524363329729 SPVNPDPV 8 Unmodified _SPVNPDPV_ 0 0 0 nc|ENSG00000079102|Q06455-6|RUNX1T1;nc|ENSG00000079102|Q06455-5|RUNX1T1;nc|ENSG00000079102|Q06455-4|RUNX1T1;nc|ENSG00000079102|Q06455-2|RUNX1T1;nc|ENSG00000079102|Q06455|RUNX1T1;nc|ENSG00000079102|Q06455-3|RUNX1T1;ENSG00000079102|ENST00000436581|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 nc|ENSG00000079102|Q06455-6|RUNX1T1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 412.711068 823.407583 0.32446 0.00013391 0.37045 0.00015289 0.69491 0.0002868 412.7108523260821 59.435 0.25334 58.944 58.835 59.089 -0.49079 0.018711 0.00022861 NaN 24.674 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 463790 60991 1261 40692 41610 -0.011184524363329729 SPVNSSKQPSY 11 Unmodified _SPVNSSKQPSY_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1 ENST00000513781.5_1_17:46970480-46973128:+|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2941284179688 2 597.293485 1192.57242 -0.50163 -0.00029962 -0.019566 -1.1687E-05 -0.5212 -0.00031131 597.2933749173876 19.902 0.20938 19.902 19.789 19.998 0 65 23 3 0 0 0 0.0111 1 9953 9953 66.683 37.601 1 3476600 60992 6632 40693 41611 71080 71080 -0.01616685087174119 SPVNSSKQPSY 11 Unmodified _SPVNSSKQPSY_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1 ENST00000513781.5_1_17:46970480-46973128:+|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2926025390625 2 597.293485 1192.57242 0.050102 2.9925E-05 -0.0077497 -4.6289E-06 0.042352 2.5296E-05 597.2933780307904 22.489 0.29165 19.711 19.519 19.81 -2.7784 37 15 3 0 0 0 1.0851E-08 2 12046 12021;12046 109.15 65.288 1 8162900 60993 6632 40693 41611 71081;71082 71082 -0.01616685087174119 SPVNSSKQPSY 11 Unmodified _SPVNSSKQPSY_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1 ENST00000513781.5_1_17:46970480-46973128:+|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 597.2931518554688 2 597.293485 1192.57242 NaN NaN NaN NaN NaN NaN NaN 22.589 1 19.811 19.311 20.311 -2.7784 0 0 0 6.0689E-06 1 12156 12156 90.964 49.125 1 60994 6632 40693 41611 71083 71083 -0.01616685087174119 SPVPCHPVL 9 Unmodified _SPVPCHPVL_ 0 0 0 REV__nc|ENSG00000289758|Q92902-2|HPS1 REV__nc|ENSG00000289758|Q92902-2|HPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7508544921875 2 474.752213 947.489873 0.41264 0.0001959 -3.0836 -0.0014639 -2.6709 -0.001268 474.75050444215697 27.806 0.3592 24.702 24.473 24.832 -3.1045 33 18 2 0 0 0 0.2001 1 15411 15411 23.148 2.2772 1 10498000 + 60995 18562 40694 41612 71084 71084 0.014027463709680887 SPVPPDPEQP 10 Unmodified _SPVPPDPEQP_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;ENST00000530469.1_1_11:43400830-43413141:+|nuORF nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.759033203125 2 531.758746 1061.50294 0.33673 0.00017906 0.45139 0.00024003 0.78811 0.00041909 531.7588910962032 77.545 0.50609 77.545 77.265 77.771 0 113 36 4 0 0 0 0.52097 1 43113 43113 15.248 2.206 1 52787000 60996 16031 40695 41613 71085 71085 -0.02535144035960002 SPVPPDPEQP 10 Unmodified _SPVPPDPEQP_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17;ENST00000530469.1_1_11:43400830-43413141:+|nuORF nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.759765625 2 531.758746 1061.50294 0.076034 4.0431E-05 1.4395 0.00076547 1.5155 0.00080591 531.7596504451916 85.215 0.9615 79.039 78.517 79.479 -6.1757 99 58 2 0 0 0 0.34249 2 56186 56061;56186 24.991 1.3424 1 151340000 60997 16031 40695 41613 71086;71087 71087 -0.02535144035960002 SPVPQGLRSL 10 Unmodified _SPVPQGLRSL_ 0 0 0 REV__ENSG00000166507|ENST00000309979|NDST2 REV__ENSG00000166507|ENST00000309979|NDST2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8737487792969 3 351.873224 1052.59784 0.96655 0.0003401 1.412 0.00049686 2.3786 0.00083696 351.8732002224422 24.515 0.36283 21.688 21.545 21.908 -2.8273 32 19 2 0 0 0 0.38092 1 13354 13354 14.957 0 1 3658600 + 60998 22128 40696 41614 71088 71088 0.07364834225904815 SPVPTSFSSPG 11 Unmodified _SPVPTSFSSPG_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7598876953125 2 531.758746 1061.50294 0.076034 4.0431E-05 1.4395 0.00076547 1.5155 0.00080591 531.7596504451916 85.215 0.9615 79.039 78.517 79.479 -6.1757 99 58 2 0 0 0 0.30985 1 56314 56314 26.268 1.2772 1 151340000 60999 3538 40697 41615 71089 71089 -0.025351440359372646 SPVQRLLRAR 10 Unmodified _SPVQRLLRAR_ 0 0 0 REV__nc|ENSG00000185651|P68036-3|UBE2L3 REV__nc|ENSG00000185651|P68036-3|UBE2L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2496032714844 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 77.958 1 77.475 76.975 77.975 -0.4826 0 0 0 0.9731 1 42689 42689 3.5871 0.95582 1 + 61000 29853 40698 41616 71090 71090 0.14134698402403956 SPVQTAITF 9 Unmodified _SPVQTAITF_ 0 0 0 ENSG00000213215|ENST00000641412|OR2F1 ENSG00000213215|ENST00000641412|OR2F1 ENSG00000213215|ENST00000641412|OR2F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2617492675781 2 482.260925 962.507297 -0.61905 -0.00029854 1.7889 0.00086271 1.1698 0.00056417 482.2617956433795 77.594 0.23704 77.111 77.032 77.269 -0.4826 14 10 2 0 0 0 0.41742 1 42498 42498 11.64 2.2929 1 767630 61001 10426 40699 41617 71091 71091 0.024543651776070874 SPVRAQTVAF 10 Unmodified _SPVRAQTVAF_ 0 0 0 ENST00000556551.2_1_14:74364803-74364911:+|nuORF ENST00000556551.2_1_14:74364803-74364911:+|nuORF ENST00000556551.2_1_14:74364803-74364911:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7658081054688 2 538.298373 1074.58219 -0.15292 -8.2316E-05 -0.61134 -0.00032908 -0.76426 -0.0004114 538.2980445502062 39.476 0.2149 39.179 39.07 39.285 -0.29716 15 9 2 0 0 0 0.21193 1 20818 20818 21.537 8.4945 1 1528600 61002 15241 40700 41618 71092 71092 0.04788547708835722 SPVREKVRL 9 Unmodified _SPVREKVRL_ 0 0 0 ENST00000519752.1_1_5:156997722-157002671:-|nuORF ENST00000519752.1_1_5:156997722-157002671:-|nuORF ENST00000519752.1_1_5:156997722-157002671:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2182006835938 3 361.892619 1082.65603 -0.031864 -1.1532E-05 2.1032 0.00076114 2.0714 0.00074961 361.8931029140692 15.003 0.11923 15.009 14.924 15.043 0.0057774 6 4 2 0 0 0 0.19994 1 7453 7453 12.241 0 1 1192300 61003 14715 40701 41619 71093 71093 0.1180051587118669 SPVRNLQSF 9 Unmodified _SPVRNLQSF_ 0 0 0 nc|ENSG00000136504|O95251-2|KAT7;nc|ENSG00000136504|O95251-4|KAT7;ENSG00000136504|ENST00000259021|KAT7;ENST00000509124.5_1_17:47866196-47893226:+|nuORF nc|ENSG00000136504|O95251-2|KAT7 nc|ENSG00000136504|O95251-2|KAT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.28271484375 2 524.282723 1046.55089 NaN NaN NaN NaN NaN NaN NaN 38.726 1 38.439 37.939 38.939 -0.28687 0 0 0 0.097684 1 20398 20398 43.982 12.714 1 61004 4827 40702 41620 71094 71094 0.02947974674748366 SPVSDVSYM 9 Oxidation (M) _SPVSDVSYM(Oxidation (M))_ SPVSDVSYM(1) SPVSDVSYM(85) 0 0 1 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7171630859375 2 500.718233 999.421912 -1.0065 -0.00050398 -0.20467 -0.00010248 -1.2112 -0.00060646 500.71820660356576 32.442 0.24544 32.442 32.316 32.561 0 39 15 3 0 0 0 0.0090851 1 16918 16918 85.357 64.903 1 27687000 61005 4346 40703 41621 71095 71095 785 -0.07782168070343687 SPVSDVSYM 9 Unmodified _SPVSDVSYM_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7220153808594 2 492.720775 983.426998 1.1691 0.00057604 1.4892 0.00073378 2.6583 0.0013098 492.72146285928784 54.369 0.30289 48.504 48.32 48.623 -5.8653 37 18 3 0 0 0 0.023164 1 34459 34459 60.39 31.903 1 33995000 61006 4346 40703 41622 71096 71096 -0.06537864207723487 SPVSGTWLL 9 Unmodified _SPVSGTWLL_ 0 0 0 ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2634887695312 2 480.263468 958.512382 0.6414 0.00030804 -0.12912 -6.2009E-05 0.51229 0.00024603 480.2633398589002 82.972 0.24735 82.475 82.425 82.672 -0.49751 16 9 2 0 0 0 0.49272 1 45441 45441 7.9102 1.7044 1 782890 61007 11320 40704 41623 71097 71097 0.031466690402339736 SPVSGTWLL 9 Unmodified _SPVSGTWLL_ 0 0 0 ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.5195922851562 1 959.519659 958.512382 0.70919 0.00068048 0.55624 0.00053372 1.2654 0.0012142 959.5202503177344 90.17 0.33452 83.995 83.793 84.127 -6.1757 31 18 2 0 0 0 0.0088975 2 59559 59430;59559 104.8 40.563 1 10363000 61008 11320 40704 41623 71098;71099 71099 0.031466690402339736 SPVSGTWLL 9 Unmodified _SPVSGTWLL_ 0 0 0 ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2643432617188 2 480.263468 958.512382 0.94817 0.00045537 -0.68105 -0.00032708 0.26711 0.00012829 480.2631986310499 90.161 0.51723 83.985 83.702 84.219 -6.1757 59 29 3 0 0 0 0.0090851 2 59443 59443;59574 85.357 41.94 1 22827000 61009 11320 40704 41623 71100;71101 71100 0.031466690402339736 SPVSGTWLL 9 Unmodified _SPVSGTWLL_ 0 0 0 ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF ENST00000264864.7_1_4:25235715-25235748:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 480.263468 958.512382 1.2807 0.00061509 0.067423 3.2381E-05 1.3482 0.00064747 480.26334067060753 82.433 0.29292 82.495 82.371 82.664 0.062004 0.010134 9.3314E-05 NaN 7.9102 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1516700 61010 11320 40704 41623 0.031466690402339736 SPVSIATAF 9 Unmodified _SPVSIATAF_ 0 0 0 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 892.4775390625 1 892.47746 891.470183 -0.16654 -0.00014863 0.46036 0.00041086 0.29382 0.00026222 892.477832234976 67.47 0.31926 66.988 66.822 67.142 -0.48218 26 13 3 0 0 0 0.038285 2 36814 36814;36916 50.855 20.63 1 3199200 61011 9932 40705 41624 71102;71103 71102 0.020106936318711632 SPVSIATAF 9 Unmodified _SPVSIATAF_ 0 0 0 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 446.7423706054688 2 446.742368 891.470183 0.43356 0.00019369 0.3271 0.00014613 0.76067 0.00033982 446.74236667779934 67.479 0.34311 66.997 66.822 67.165 -0.48218 32 14 3 0 0 0 0.023164 1 36868 36868 60.39 30.165 1 3543200 61012 9932 40705 41624 71104 71104 0.020106936318711632 SPVSIATAF 9 Unmodified _SPVSIATAF_ 0 0 0 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MSMS AL20221201_MKP_PDAC_01 4 446.7433166503906 2 446.742368 891.470183 NaN NaN NaN NaN NaN NaN NaN 72.992 1 66.817 66.317 67.317 -6.1757 0 0 0 0.050352 1 47743 47743 57.471 21.427 1 61013 9932 40705 41624 71105 71105 0.020106936318711632 SPVSIATAF 9 Unmodified _SPVSIATAF_ 0 0 0 nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 nc|ENSG00000197249|P01009-3|SERPINA1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 446.742368 891.470183 0.9781 0.00043696 -1.0231 -0.00045706 -0.044989 -2.0099E-05 446.7423375245128 73.129 0.13644 66.953 66.877 67.013 -6.1757 -0.02183 -0.001101 NaN 60.39 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 6090100 61014 9932 40705 41624 0.020106936318711632 SPVSKAAL 8 Unmodified _SPVSKAAL_ 0 0 0 nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;nc|ENSG00000174227|Q5H8A4-3|PIGG;ENST00000503261.5_1_4:520855-527658:+|nuORF;ENST00000508669.1_1_4:517631-521020:+|nuORF nc|ENSG00000174227|Q5H8A4-2|PIGG nc|ENSG00000174227|Q5H8A4-2|PIGG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.7319641113281 2 386.731803 771.449054 -0.41524 -0.00016059 1.1111 0.00042971 0.69589 0.00026912 386.7321517886446 24.48 0.18261 24.48 24.348 24.531 0 13 8 2 0 0 0 0.67686 1 12510 12510 19.257 4.4187 1 984200 61015 8402 40706 41625 71106 71106 0.054187283229907734 SPVSKGILQY 10 Unmodified _SPVSKGILQY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3071899414062 2 546.308406 1090.60226 0.012353 6.7487E-06 -0.60557 -0.00033083 -0.59322 -0.00032408 546.809528194684 45.335 0.20697 45.335 45.189 45.396 0 21 10 3 0 0 0 0.0011347 1 24709 24709 128.57 72.396 1 12065000 61016 7600 40707 41626 71107 71107 0.06058298648827076 SPVSKGILQY 10 Unmodified _SPVSKGILQY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3086547851562 2 546.308406 1090.60226 -0.12071 -6.5946E-05 -0.021306 -1.1639E-05 -0.14202 -7.7585E-05 546.3083641281432 45.552 0.30722 45.227 45.086 45.393 -0.32425 52 16 5 0 0 0 3.4918E-05 2 24288 24288;24392 128.57 62.534 1 148640000 61017 7600 40707 41626 71108;71109 71108 0.06058298648827076 SPVSKGILQY 10 Unmodified _SPVSKGILQY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3082275390625 2 546.308406 1090.60226 0.026085 1.4251E-05 -0.016392 -8.9551E-06 0.0096933 5.2955E-06 546.30848407895 45.249 0.28643 45.221 45.095 45.381 -0.028011 36 15 4 0 0 0 8.5878E-06 2 24263 24263;24367 136.39 80.215 1 46814000 61018 7600 40707 41626 71110;71111 71110 0.06058298648827076 SPVSKGILQY 10 Unmodified _SPVSKGILQY_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3087768554688 2 546.308406 1090.60226 0.96613 0.0005278 -0.30622 -0.00016729 0.65991 0.00036052 546.3082884946541 50.784 0.72541 45.135 44.861 45.586 -5.649 128 44 4 0 0 0 0.0045692 3 31793 31793;31919;32054 114.19 64.253 1 825410000 61019 7600 40707 41626 71112;71113;71114 71112 0.06058298648827076 SPVSLHLRTS 10 Unmodified _SPVSLHLRTS_ 0 0 0 nc|ENSG997|Q9N2J8|HERV-H-ENH3 nc|ENSG997|Q9N2J8|HERV-H-ENH3 nc|ENSG997|Q9N2J8|HERV-H-ENH3 MSMS AL20221201_MKP_PDAC_01 4 366.5364990234375 3 366.208495 1095.60366 NaN NaN NaN NaN NaN NaN NaN 44.589 1 39.737 39.237 40.237 -4.852 0 0 0 0.47175 1 27241 27241 18.721 0 1 61020 16659 40708 41627 71115 71115 0.05967932737598858 SPVSLSLPA 9 Unmodified _SPVSLSLPA_ 0 0 0 REV__ENST00000269321.11_1_17:79826145-79826631:-|nuORF REV__ENST00000269321.11_1_17:79826145-79826631:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 871.4977416992188 1 870.49311 869.485833 -0.39085 -0.00034023 0.14359 0.00012499 -0.24727 -0.00021524 870.4930084357447 55.276 0.35991 55.276 55.077 55.437 0 35 15 3 0 0 0 0.2001 1 30651 30651 23.148 1.4018 1 7014600 + 61021 25123 40709 41628 71116 71116 0.045869801488947815 SPVTDYRDM 9 Unmodified _SPVTDYRDM_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11 ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2427368164062 2 542.242406 1082.47026 -0.42169 -0.00022866 2.4511 0.0013291 2.0294 0.0011005 542.2428973414817 34.786 0.36136 34.786 34.597 34.958 0 45 18 3 0 0 0 0.36964 1 18397 18397 13.906 0.86358 1 6528500 61022 7620 40710 41629 71117 71117 -0.06767674430443549 SPVTKQWQE 9 Unmodified _SPVTKQWQE_ 0 0 0 ENST00000512791.1_1_4:145636196-145636656:+|nuORF;ENSG00000164161|ENST00000296575|HHIP ENST00000512791.1_1_4:145636196-145636656:+|nuORF ENST00000512791.1_1_4:145636196-145636656:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.30859375 2 551.780013 1101.54547 -0.04002 -2.2082E-05 -0.5915 -0.00032638 -0.63152 -0.00034846 551.7790664771697 37.473 0.11845 37.201 37.136 37.254 -0.27133 7 4 2 0 0 0 0.19891 1 19687 19687 11.64 0 1 1097100 61023 7149 40711 41630 71118 71118 -0.0012374890770843194 SPVTPEGTTM 10 Oxidation (M) _SPVTPEGTTM(Oxidation (M))_ SPVTPEGTTM(1) SPVTPEGTTM(52) 0 0 1 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20221201_MKP_PDAC_01 4 518.2366333007812 2 518.23679 1034.45903 NaN NaN NaN NaN NaN NaN NaN 26.102 1 23.151 22.651 23.651 -2.9511 0 0 0 0.087592 1 14345 14345 52.268 19.963 1 61024 7922 40712 41631 71119 71119 1353 -0.056824965245596104 SPVTPEGTTM 10 Unmodified _SPVTPEGTTM_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MSMS AL20221201_MKP_PDAC_01 4 510.2392883300781 2 510.239332 1018.46411 NaN NaN NaN NaN NaN NaN NaN 40.217 1 35.688 35.188 36.188 -4.5294 0 0 0 0.068442 1 23993 23993 53.833 35.686 1 61025 7922 40712 41632 71120 71120 -0.04438192661962148 SPVTQDDLQY 10 Unmodified _SPVTQDDLQY_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2730712890625 2 583.272218 1164.52988 -0.12271 -7.1576E-05 1.674 0.00097641 1.5513 0.00090484 583.2733956121939 41.914 0.12888 41.914 41.846 41.975 0 11 6 2 0 0 0 0.23548 1 22679 22679 31.268 17.76 1 5051600 61026 357 40713 41633 71121 71121 -0.04580080215419002 SPVTSGLPLFF 11 Unmodified _SPVTSGLPLFF_ 0 0 0 ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000058063|ENST00000323116|ATP11B;ENST00000459908.5_1_13:113439469-113512287:+|nuORF;ENSG00000068650|ENST00000375645|ATP11A;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C ATP11B|p.I372Mfs*15|1|0.07|ENSG00000058063|chr3:182859273-182859297|ATTGGCTGGGATCTTGATCTGTATC/-|frameshift_variant;ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8189086914062 2 582.818607 1163.62266 NaN NaN NaN NaN NaN NaN NaN 77.843 1 77.36 76.86 77.86 -0.4826 0 0 0 0.79635 1 42619 42619 12.241 0.60036 1 61027 2003;39 40714 41634 71122 71122 0.04739469308628941 SPVVAQSHY 9 Unmodified _SPVVAQSHY_ 0 0 0 ENSG00000113761|ENST00000358149|ZNF346;nc|ENSG00000113761|Q9UL40-2|ZNF346;nc|ENSG00000113761|Q9UL40-3|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 ENSG00000113761|ENST00000358149|ZNF346 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2479858398438 2 494.248349 986.482145 -0.23122 -0.00011428 1.8389 0.00090887 1.6077 0.00079459 494.2490794990548 23.26 0.1438 23.26 23.182 23.326 0 9 6 2 0 0 0 0.30202 1 11866 11866 17.113 2.2746 1 315790 61028 2999 40715 41635 71123 71123 -0.011636896249569872 SPVVRVAV 8 Unmodified _SPVVRVAV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7607421875 2 413.760895 825.507237 0.084608 3.5007E-05 -0.037826 -1.5651E-05 0.046781 1.9356E-05 413.76091882635654 39.878 0.21785 39.581 39.431 39.649 -0.29716 18 10 2 0 0 0 0.36898 1 21042 21042 47.749 5.9091 1 2570600 61029 7651 40716 41636 71124 71124 0.08750409968286021 SPVVRVAV 8 Unmodified _SPVVRVAV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7608947753906 2 413.760895 825.507237 0.81543 0.00033739 0.071512 2.9589E-05 0.88694 0.00036698 413.7609066392846 44.62 0.41827 39.768 39.557 39.975 -4.852 58 33 2 0 0 0 0.22971 2 27292 27165;27292 65.235 19.214 1 28810000 61030 7651 40716 41636 71125;71126 71126 0.08750409968286021 SPVVRVAV 8 Unmodified _SPVVRVAV_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 413.760895 825.507237 0.029345 1.2142E-05 0.24698 0.00010219 0.27633 0.00011433 413.7608080269765 39.605 0.16978 39.605 39.53 39.7 0 -0.046818 0.00016034 NaN 65.235 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1350800 61031 7651 40716 41636 0.08750409968286021 SPVYIAIFY 9 Unmodified _SPVYIAIFY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7897338867188 2 536.789318 1071.56408 2.3088 0.0012393 -1.3739 -0.00073748 0.93495 0.00050187 536.7883262922526 96.382 0.36978 96.375 96.192 96.562 -0.007019 30 12 3 0 0 0 0.016184 1 53509 53509 67.344 29.37 1 8214500 61032 1925 40717 41637 71127 71127 0.03116412734129881 SPVYIAIFY 9 Unmodified _SPVYIAIFY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.79052734375 2 536.789318 1071.56408 1.0293 0.00055249 0.80033 0.00042961 1.8296 0.0009821 536.7896263222926 100.44 0.25734 94.26 94.088 94.345 -6.1757 34 15 4 0 0 0 0.06187 1 67129 67129 42.095 3.9434 1 149560000 61033 1925 40717 41637 71128 71128 0.03116412734129881 SPVYTEADGTF 11 Unmodified _SPVYTEADGTF_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7677612304688 2 593.766768 1185.51898 0.2714 0.00016115 0.07248 4.3036E-05 0.34388 0.00020419 593.7666007178225 48.018 0.19632 48.018 47.875 48.071 0 13 9 2 0 0 0 0.57006 1 26327 26327 21.537 11.463 1 1687600 61034 4794 40718 41638 71129 71129 -0.06635482589717867 SPVYVGRVV 9 Unmodified _SPVYVGRVV_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7562866210938 2 488.284734 974.554916 -0.14534 -7.0968E-05 -2.1444 -0.0010471 -2.2898 -0.0011181 488.28366417761185 41.838 0.12152 41.531 41.433 41.554 -0.30682 8 5 2 0 0 0 0.18118 1 22163 22163 19.257 6.7254 1 3440700 61035 10212 40719 41639 71130 71130 0.06662064168483539 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.457763671875 1 974.457787 973.45051 -0.23129 -0.00022538 -0.026654 -2.5973E-05 -0.25794 -0.00025136 974.4579888296175 52.07 0.31297 52.07 51.886 52.199 0 34 13 3 0 0 0 0.0036082 2 28844 28737;28844 123.45 87.324 1 15751000 61036 6624 40720 41640 71131;71132 71132 -0.03727682378917052 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7327575683594 2 487.732532 973.45051 -0.14325 -6.987E-05 0.18272 8.9119E-05 0.039467 1.925E-05 487.73263877318436 52.066 0.55956 52.066 51.842 52.402 0 72 24 4 0 0 0 0.013323 2 28873 28764;28873 71.134 42.647 1 103140000 61037 6624 40720 41640 71133;71134 71134 -0.03727682378917052 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7337951660156 2 487.732532 973.45051 0.60526 0.00029521 -0.9713 -0.00047374 -0.36604 -0.00017853 487.7320625158512 52.625 0.27364 52.192 52.044 52.317 -0.43367 31 13 3 0 0 0 0.022193 1 28400 28400 61.357 39.611 1 6009700 61038 6624 40720 41640 71135 71135 -0.03727682378917052 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7323913574219 2 487.732532 973.45051 0.81738 0.00039866 -0.70389 -0.00034331 0.11349 5.5355E-05 487.7323132421611 52.294 0.20154 52.235 52.087 52.289 -0.058918 16 9 2 0 0 0 0.022193 1 28306 28306 61.357 35.016 1 1779900 61039 6624 40720 41640 71136 71136 -0.03727682378917052 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7322082519531 2 487.732532 973.45051 0.94603 0.00046141 -0.43453 -0.00021193 0.5115 0.00024948 487.7322575080276 60.047 0.65754 53.932 53.65 54.307 -6.1147 95 35 4 0 0 0 0.011968 3 38718 38453;38588;38718 74.929 49.387 1 282560000 61040 6624 40720 41640 71137;71138;71139 71139 -0.03727682378917052 SPWADNTAL 9 Unmodified _SPWADNTAL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20221201_MKP_PDAC_01 4 974.4585571289062 1 974.457787 973.45051 0.63548 0.00061925 -0.21048 -0.00020511 0.425 0.00041414 974.4574859312413 60.047 0.56584 53.933 53.65 54.216 -6.1147 63 30 3 0 0 0 0.0036082 3 38587 38460;38587;38715 123.45 85.477 1 94955000 61041 6624 40720 41640 71140;71141;71142 71141 -0.03727682378917052 SPWAWPWP 8 Unmodified _SPWAWPWP_ 0 0 0 REV__ENST00000425389.2_1_7:150068280-150068442:+|nuORF REV__ENST00000425389.2_1_7:150068280-150068442:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.303466796875 2 513.745245 1025.47594 0.52524 0.00026984 -0.017711 -9.0987E-06 0.50752 0.00026074 513.7453335258966 60.021 0.17127 59.968 59.897 60.068 -0.053062 13 8 2 0 0 0 8.7369 1 32696 32696 5.7604 0 1 4043500 + 61042 26895 40721 41641 71143 71143 -0.03578163065822082 SPWEGAKNVY 10 Unmodified _SPWEGAKNVY_ 0 0 0 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7826538085938 2 575.780013 1149.54547 0.12457 7.1722E-05 -0.1596 -9.1896E-05 -0.035038 -2.0174E-05 575.7804384156519 38.682 0.29983 38.395 38.262 38.562 -0.28687 33 14 3 0 0 0 0.095786 2 20333 20333;20444 47.594 24.858 1 13148000 61043 7693 40722 41642 71144;71145 71144 -0.023317489077271603 SPWEGAKNVY 10 Unmodified _SPWEGAKNVY_ 0 0 0 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7809448242188 2 575.780013 1149.54547 0.71926 0.00041414 0.077414 4.4573E-05 0.79668 0.00045871 576.2810842359644 43.642 0.88614 38.877 38.334 39.22 -4.7648 190 58 5 0 0 0 0.035244 2 26515 26388;26515 65.474 46.217 1 89517000 61044 7693 40722 41642 71146;71147 71147 -0.023317489077271603 SPWKHTEVF 9 Unmodified _SPWKHTEVF_ 0 0 0 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8602294921875 3 377.525825 1129.55564 -0.141 -5.323E-05 1.0747 0.00040574 0.93373 0.00035251 377.5262165425546 37.433 0.31152 37.161 36.992 37.303 -0.27133 34 12 4 0 0 0 0.14 1 19642 19642 33.445 22.645 1 6460500 61045 4732 40723 41643 71148 71148 -0.003951411825028117 SPWKHTEVF 9 Unmodified _SPWKHTEVF_ 0 0 0 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5263061523438 3 377.525825 1129.55564 1.9953 0.00075329 -0.67578 -0.00025512 1.3196 0.00049817 377.52566847190405 41.695 0.38348 37.087 36.894 37.277 -4.6079 64 24 3 0 0 0 0.19127 2 24992 24992;25130 34.932 23.437 1 29273000 61046 4732 40723 41643 71149;71150 71149 -0.003951411825028117 SPWPDAPTAY 10 Unmodified _SPWPDAPTAY_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000486388.5_1_3:33438291-33450199:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7527465820312 2 552.753464 1103.49238 0.21629 0.00011956 0.033509 1.8522E-05 0.2498 0.00013808 552.7531564164805 65.54 0.4618 59.365 59.132 59.594 -6.1757 36 26 2 0 0 0 0.18021 1 42573 42573 36.127 13.391 1 15912000 61047 6267 40724 41644 71151 71151 -0.05523126690400204 SPWQDRHGETF 11 Unmodified _SPWQDRHGETF_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.8737487792969 3 453.874064 1358.60036 -0.72238 -0.00032787 0.12063 5.4751E-05 -0.60175 -0.00027312 453.8743398396427 32.682 0.17259 32.682 32.599 32.772 0 13 8 2 0 0 0 0.71728 1 17124 17124 2.6312 0.72486 1 1743900 61048 4988 40725 41645 71152 71152 -0.06459362107102606 SPWSGLMAL 9 Oxidation (M) _SPWSGLM(Oxidation (M))AL_ SPWSGLM(1)AL SPWSGLM(42)AL 0 0 1 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2424926757812 2 489.241678 976.468803 -0.13489 -6.5994E-05 1.322 0.00064677 1.1871 0.00058078 489.2424322342721 76.977 0.40113 76.498 76.3 76.701 -0.47945 33 17 2 0 0 0 0.06187 1 42105 42105 42.095 7.9072 1 749050 61049 7010 40726 41646 71153 71153 1205 -0.02037263728527705 SPWSGLMAL 9 Oxidation (M) _SPWSGLM(Oxidation (M))AL_ SPWSGLM(1)AL SPWSGLM(74)AL 0 0 1 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2422485351562 2 489.241678 976.468803 0.41105 0.0002011 0.17982 8.7974E-05 0.59087 0.00028908 489.2417470973792 76.529 0.39555 76.577 76.352 76.748 0.047943 32 16 2 0 0 0 0.012148 2 42169 42169;42269 74.423 24.754 1 4273000 61050 7010 40726 41646 71154;71155 71154 1205 -0.02037263728527705 SPWSGLMAL 9 Oxidation (M) _SPWSGLM(Oxidation (M))AL_ SPWSGLM(1)AL SPWSGLM(85)AL 0 0 1 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2417297363281 2 489.241678 976.468803 0.83046 0.0004063 1.0445 0.000511 1.8749 0.0009173 489.2423740155469 84.074 0.53329 77.898 77.606 78.139 -6.1757 72 28 3 0 0 0 0.0090851 2 55258 55258;55390 85.357 18.321 1 18060000 61051 7010 40726 41646 71156;71157 71156 1205 -0.02037263728527705 SPWSGLMAL 9 Unmodified _SPWSGLMAL_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.4842529296875 1 961.481165 960.473888 1.0007 0.00096212 0.54651 0.00052546 1.5472 0.0014876 961.4817281402505 100.02 0.12975 93.84 93.769 93.898 -6.1757 17 8 3 0 0 0 0.0067112 1 66763 66763 112.59 52.204 1 25071000 61052 7010 40726 41647 71158 71158 -0.007929598659188741 SPWSGLMAL 9 Unmodified _SPWSGLMAL_ 0 0 0 ENSG00000163527|ENST00000295770|STT3B;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF ENSG00000163527|ENST00000295770|STT3B ENSG00000163527|ENST00000295770|STT3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2453308105469 2 481.244221 960.473888 1.2301 0.00059198 -0.24301 -0.00011695 0.9871 0.00047503 481.2436504795785 100.02 0.43155 93.842 93.755 94.187 -6.1757 38 27 3 0 0 0 0.0077963 1 66766 66766 109.63 49.24 1 34710000 61053 7010 40726 41647 71159 71159 -0.007929598659188741 SPWSWCDRS 9 Unmodified _SPWSWCDRS_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.1585998535156 3 375.159036 1122.45528 0.39577 0.00014848 -0.73262 -0.00027485 -0.33686 -0.00012637 375.15870817642536 94.141 0.36391 93.721 93.526 93.89 -0.42043 36 20 2 0 0 0 0.58822 2 51404 51404;51509 2.086 0 1 1211900 61054 16488 40727 41648 71160;71161 71160 -0.1010512150780869 SPWSWCDRS 9 Unmodified _SPWSWCDRS_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2348022460938 2 562.234916 1122.45528 0.57789 0.00032491 -0.71115 -0.00039983 -0.13326 -7.4923E-05 562.2346415729769 94.116 0.32584 93.696 93.548 93.874 -0.42044 37 18 3 0 0 0 0.57757 1 51419 51419 2.0598 0 1 1123200 61055 16488 40727 41648 71162 71162 -0.1010512150780869 SPWVGTEKGTF 11 Unmodified _SPWVGTEKGTF_ 0 0 0 ENST00000484003.1_1_6:32810760-32812105:-|nuORF ENST00000484003.1_1_6:32810760-32812105:-|nuORF ENST00000484003.1_1_6:32810760-32812105:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8013916015625 2 604.800946 1207.58734 0.50854 0.00030756 -0.12156 -7.352E-05 0.38698 0.00023404 604.8009650472292 46.389 0.15489 46.052 45.957 46.112 -0.33665 10 7 2 0 0 0 0.014635 1 24839 24839 75.571 44.934 1 6638700 61056 14144 40728 41649 71163 71163 -0.008151932191822198 SPWVGTEKGTF 11 Unmodified _SPWVGTEKGTF_ 0 0 0 ENST00000484003.1_1_6:32810760-32812105:-|nuORF ENST00000484003.1_1_6:32810760-32812105:-|nuORF ENST00000484003.1_1_6:32810760-32812105:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 604.8014526367188 2 604.800946 1207.58734 NaN NaN NaN NaN NaN NaN NaN 51.898 1 46.164 45.664 46.664 -5.7345 0 0 0 0.01952 1 32704 32704 93.448 59.047 1 61057 14144 40728 41649 71164 71164 -0.008151932191822198 SPYAAQPTSY 10 Unmodified _SPYAAQPTSY_ 0 0 0 nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1;nc|ENSG00000170266|P16278-2|GLB1 nc|ENSG00000170266|P16278-3|GLB1 nc|ENSG00000170266|P16278-3|GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7504272460938 2 542.750921 1083.48729 -0.64836 -0.0003519 0.94191 0.00051122 0.29355 0.00015932 542.7515064313228 33.009 0.25658 33.009 32.831 33.088 0 20 12 2 0 0 0 0.024115 1 17267 17267 71.922 39.617 1 2567400 61058 7965 40729 41650 71165 71165 -0.051114305530063575 SPYAGAAGF 9 Unmodified _SPYAGAAGF_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 840.3897705078125 1 840.388645 839.381368 -0.042571 -3.5776E-05 0.61965 0.00052075 0.57708 0.00048497 840.3896673319301 43.334 0.15655 43.334 43.242 43.399 0 12 7 2 0 0 0 0.0025195 1 23507 23507 129.2 51.216 1 1505400 61059 3421 40730 41651 71166 71166 -0.04474721607812171 SPYALELLTVY 11 Unmodified _SPYALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.84228515625 2 634.842279 1267.67001 0.021369 1.3566E-05 0.27707 0.00017589 0.29844 0.00018946 634.8421531521759 99.237 0.17606 99.044 98.942 99.118 -0.19321 18 5 4 0 0 0 0.0029835 1 54184 54184 78.728 54.707 1 6248100 61060 2782 40731 41652 71167 71167 0.04687703788931685 SPYALELLTVY 11 Unmodified _SPYALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8436279296875 2 634.842279 1267.67001 4.2999 0.0027298 -1.7405 -0.001105 2.5593 0.0016248 634.8411747831464 99.069 0.18723 99.041 98.92 99.108 -0.028282 16 6 3 0 0 0 0.0029835 1 55028 55028 78.728 58.314 1 15048000 61061 2782 40731 41652 71168 71168 0.04687703788931685 SPYALELLTVY 11 Unmodified _SPYALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8424072265625 2 634.842279 1267.67001 0.65333 0.00041476 -0.062397 -3.9612E-05 0.59093 0.00037515 634.8422629251811 100.7 0.12509 94.525 94.459 94.584 -6.1757 27 8 4 0 0 0 0.0029835 1 67390 67390 78.728 59.471 1 179580000 61062 2782 40731 41652 71169 71169 0.04687703788931685 SPYAYYLY 8 Unmodified _SPYAYYLY_ 0 0 0 ENSG00000143450|ENST00000400999|OAZ3 ENSG00000143450|ENST00000400999|OAZ3 ENSG00000143450|ENST00000400999|OAZ3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.7119750976562 2 520.242201 1038.46985 0.37506 0.00019512 3.3882 0.0017627 3.7633 0.0019578 520.7446086544672 24.496 0.20479 21.669 21.519 21.724 -2.8273 18 11 3 0 0 0 8.7369 1 13290 13290 10.183 0.10947 1 2950400 61063 5513 40732 41653 71170 71170 -0.047847260880189424 SPYEDEVNSSF 11 Unmodified _SPYEDEVNSSF_ 0 0 0 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 ENSG00000198734|ENST00000367797|F5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.265625 2 637.26459 1272.51463 NaN NaN NaN NaN NaN NaN NaN 62.37 1 62.37 61.87 62.87 0 0 0 0 0.93893 1 34785 34785 3.2813 1.2216 1 61064 10136 40733 41654 71171 71171 -0.11072991803280274 SPYETLHSF 9 Unmodified _SPYETLHSF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7535400390625 2 540.753464 1079.49238 0.44451 0.00024037 0.42553 0.00023011 0.87004 0.00047048 540.7534586374582 45.816 0.27239 45.816 45.685 45.957 0 29 13 3 0 0 0 0.010818 1 24967 24967 78.149 51.881 1 19539000 61065 9907 40734 41655 71172 71172 -0.044191266903681026 SPYETLHSF 9 Unmodified _SPYETLHSF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7542114257812 2 540.753464 1079.49238 0.16309 8.8193E-05 1.1304 0.00061128 1.2935 0.00069948 540.7540311398545 46.148 0.25499 45.812 45.665 45.92 -0.33664 25 12 3 0 0 0 0.0083938 1 24669 24669 108 68.04 1 8280200 61066 9907 40734 41655 71173 71173 -0.044191266903681026 SPYFLPSIPL 10 Unmodified _SPYFLPSIPL_ 0 0 0 ENST00000256646.6_1_1:120456795-120456966:-|nuORF ENST00000256646.6_1_1:120456795-120456966:-|nuORF ENST00000256646.6_1_1:120456795-120456966:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.78173828125 2 567.3157 1132.61685 0.50577 0.00028693 1.4904 0.00084552 1.9961 0.0011324 567.316737799519 57.99 0.25799 57.99 57.845 58.103 0 14 10 2 0 0 0 0.21571 1 32214 32214 25.399 10.561 1 745680 61067 11183 40735 41656 71174 71174 0.055843707969415846 SPYFQRPLAL 10 Unmodified _SPYFQRPLAL_ 0 0 0 nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH nc|ENSG00000116761|P32929-3|CTH nc|ENSG00000116761|P32929-3|CTH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2986450195312 2 596.329673 1190.64479 0.14265 8.5068E-05 -0.27104 -0.00016163 -0.12838 -7.6558E-05 596.8313531343688 61.451 0.28008 61.418 61.271 61.551 -0.032787 31 13 3 0 0 0 0.089718 1 33527 33527 47.594 47.594 1 5220700 61068 3253 40736 41657 71175 71175 0.057096937770666045 SPYKDYEVK 9 Unmodified _SPYKDYEVK_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8565368652344 3 376.85724 1127.54989 NaN NaN NaN NaN NaN NaN NaN 19.998 1 19.998 19.498 20.498 0 0 0 0 0.61417 1 10040 10040 12.175 8.2984 1 61069 481 40737 41658 71176 71176 -0.008782844848155946 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENSG00000183828|ENST00000392568|NUDT14;ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF ENSG00000183828|ENST00000392568|NUDT14 ENSG00000183828|ENST00000392568|NUDT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3143920898438 2 530.313492 1058.61243 0.30334 0.00016087 1.0679 0.0005663 1.3712 0.00072717 530.3139326154254 63.205 0.25808 62.719 62.583 62.841 -0.48617 19 11 2 0 0 0 0.0085386 1 34447 34447 100.09 56.318 1 3499400 61070 9201 40738 41659 71177 71177 0.08546906374044738 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENSG00000183828|ENST00000392568|NUDT14;ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF ENSG00000183828|ENST00000392568|NUDT14 ENSG00000183828|ENST00000392568|NUDT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.3136596679688 2 530.313492 1058.61243 0.3137 0.00016636 0.64595 0.00034256 0.95965 0.00050892 530.3135654846584 62.803 0.40794 62.781 62.58 62.988 -0.021614 59 20 4 0 0 0 0.0048194 2 34272 34272;34382 117.76 57.687 1 44662000 61071 9201 40738 41659 71178;71179 71178 0.08546906374044738 SPYLRPLTL 9 Unmodified _SPYLRPLTL_ 0 0 0 ENSG00000183828|ENST00000392568|NUDT14;ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF ENSG00000183828|ENST00000392568|NUDT14 ENSG00000183828|ENST00000392568|NUDT14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.3147583007812 2 530.313492 1058.61243 0.6105 0.00032376 0.15052 7.982E-05 0.76102 0.00040358 530.3134661919222 68.026 0.56913 61.85 61.601 62.17 -6.1757 75 33 3 0 0 0 0.0088668 2 44317 44317;44470 87.258 54.473 1 59639000 61072 9201 40738 41659 71180;71181 71180 0.08546906374044738 SPYNISDMSK 10 Unmodified _SPYNISDMSK_ 0 0 0 REV__ENSG00000120278|ENST00000696526|PLEKHG1 REV__ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1781311035156 3 381.177985 1140.51212 0.49615 0.00018912 2.1766 0.00082967 2.6727 0.0010188 381.17863842493 52.063 0.2391 51.629 51.55 51.789 -0.43367 18 11 2 0 0 0 0.71276 1 28155 28155 0.62683 0 1 1640400 + 61073 19235 40739 41660 71182 71182 -0.052511187419213456 SPYPGLRLISL 11 Unmodified _SPYPGLRLISL_ 0 0 0 nc|ENSG00000166311|P17405-4|SMPD1;ENSG00000166311|ENST00000342245|SMPD1;ENST00000531303.5_1_11:6412683-6415445:+|nuORF;ENST00000534405.5_1_11:6413241-6415834:+|nuORF nc|ENSG00000166311|P17405-4|SMPD1 nc|ENSG00000166311|P17405-4|SMPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3585815429688 2 608.358431 1214.70231 0.96618 0.00058778 -0.89714 -0.00054578 0.069039 4.2E-05 608.3576429140636 97.057 0.23535 90.881 90.756 90.992 -6.1757 22 13 2 0 0 0 0.0030527 1 64341 64341 78.61 26.981 1 16546000 61074 7468 40740 41661 71183 71183 0.10354535982605739 SPYPTKTQTM 10 Oxidation (M) _SPYPTKTQTM(Oxidation (M))_ SPYPTKTQTM(1) SPYPTKTQTM(53) 0 0 1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2796020507812 2 585.278989 1168.54342 0.80323 0.00047011 -0.81413 -0.00047649 -0.010903 -6.3813E-06 585.2783459560659 18.949 0.28306 16.327 16.223 16.506 -2.6215 25 17 2 0 0 0 0.06987 1 9996 9996 53.404 24.322 1 3283500 61075 7093 40741 41662 71184 71184 1219 -0.03410545707856727 SPYPTKTQTM 10 Unmodified _SPYPTKTQTM_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2818603515625 2 577.281531 1152.54851 0.48177 0.00027811 1.1052 0.00063804 1.587 0.00091615 577.2822634758103 27.531 0.19931 24.494 24.416 24.615 -3.0365 15 9 2 0 0 0 0.05292 1 15269 15269 65.474 29.347 1 10089000 61076 7093 40741 41663 71185 71185 -0.021662418452251586 SPYQGGVFF 9 Unmodified _SPYQGGVFF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2403259277344 2 501.239993 1000.46543 0.27439 0.00013754 1.3016 0.00065243 1.576 0.00078996 501.24021042431247 71.932 0.34105 71.456 71.319 71.66 -0.47609 28 13 3 0 0 0 0.022193 1 39382 39382 61.357 30.721 1 2625900 61077 2644;1259 40742 41664 71186 71186 -0.03478190510895729 SPYQGGVFF 9 Unmodified _SPYQGGVFF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENST00000503742.5_1_4:103723687-103747665:-|nuORF;ENST00000440899.5_1_7:43978041-43988321:+|nuORF;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2406311035156 2 501.239993 1000.46543 0.79416 0.00039806 -0.17665 -8.8544E-05 0.61751 0.00030952 501.23946758460994 78.159 0.50743 71.983 71.634 72.142 -6.1757 45 28 2 0 0 0 0.010611 2 50994 50994;51165 78.728 42.601 1 22988000 61078 2644;1259 40742 41664 71187;71188 71187 -0.03478190510895729 SPYQNIKIL 9 Unmodified _SPYQNIKIL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3106079101562 2 538.310949 1074.60735 0.33779 0.00018184 0.31986 0.00017218 0.65765 0.00035402 538.3110729524071 55.465 0.31164 54.987 54.841 55.152 -0.47798 41 14 3 0 0 0 0.0082548 1 30051 30051 96.367 52.508 1 8409300 61079 2023 40743 41665 71189 71189 0.0730260251141317 SPYQNIKIL 9 Unmodified _SPYQNIKIL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3114013671875 2 538.310949 1074.60735 0.21787 0.00011728 0.44149 0.00023766 0.65935 0.00035494 538.3113563514669 55.121 0.27917 55.052 54.919 55.198 -0.068737 29 13 3 0 0 0 0.0074135 1 29951 29951 110.67 62.329 1 4617400 61080 2023 40743 41665 71190 71190 0.0730260251141317 SPYQNIKIL 9 Unmodified _SPYQNIKIL_ 0 0 0 ENSG00000102172|ENST00000404933|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF;nc|ENSG00000102172|P52788-2|SMS ENSG00000102172|ENST00000404933|SMS ENSG00000102172|ENST00000404933|SMS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7868041992188 2 538.310949 1074.60735 1.0251 0.00055183 0.3843 0.00020688 1.4094 0.0007587 538.3111619185661 60.914 0.38538 54.766 54.532 54.918 -6.1478 41 20 3 0 0 0 0.13704 1 39274 39274 32.786 18.88 1 42911000 61081 2023 40743 41665 71191 71191 0.0730260251141317 SPYQTQPTF 9 Unmodified _SPYQTQPTF_ 0 0 0 nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.753173828125 2 534.753464 1067.49238 -0.48452 -0.0002591 -0.26396 -0.00014115 -0.74848 -0.00040025 534.7533481461411 35.747 0.19073 35.524 35.43 35.621 -0.2224 12 7 2 0 0 0 0.49272 1 18764 18764 7.9102 0 1 1452800 61082 9478 40744 41666 71192 71192 -0.038671266903975265 SPYSVVCKY 9 Carbamidomethyl (C) _SPYSVVC(Carbamidomethyl (C))KY_ SPYSVVC(1)KY SPYSVVC(130)KY 0 1 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.764404296875 2 551.765517 1101.51648 0.92714 0.00051157 -1.2659 -0.00069848 -0.33876 -0.00018692 551.764024983573 42.038 0.49065 37.353 37.084 37.575 -4.6846 83 31 4 0 0 0 0.0017364 1 25202 25202 134.3 74.222 1 144320000 61083 4521 40745 41667 71193 71193 464 -0.030216095283549294 SPYVSPKESPF 11 Unmodified _SPYVSPKESPF_ 0 0 0 ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC ENSG00000072274|ENST00000360110|TFRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3095703125 2 619.308603 1236.60265 0.87382 0.00054116 -0.57327 -0.00035503 0.30055 0.00018613 619.8100433842372 49.714 0.20095 44.175 44.05 44.251 -5.5391 19 12 2 0 0 0 4.5968E-06 1 31043 31043 124.95 79.253 1 18897000 61084 1077 40746 41668 71194 71194 -0.006183264219998819 SQAESYYR 8 Unmodified _SQAESYYR_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MSMS AL20221201_MKP_PDAC_01 4 502.2262268066406 2 502.227613 1002.44067 NaN NaN NaN NaN NaN NaN NaN 18.712 1 16.091 15.591 16.591 -2.6215 0 0 0 0.77249 1 9873 9873 24.674 2.9272 1 61085 16141 40747 41669 71195 71195 -0.06044870384289425 SQAPDGMIIEE 11 Unmodified _SQAPDGMIIEE_ 0 0 0 REV__ENSG00000102870|ENST00000262525|ZNF629 REV__ENSG00000102870|ENST00000262525|ZNF629 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.18505859375 3 397.185028 1188.53325 -0.53097 -0.00021089 0.00062425 2.4794E-07 -0.53035 -0.00021065 397.1850814156163 18.382 0.081535 18.405 18.342 18.423 0.023106 22 13 2 0 0 0 0.7453 1 9195 9195 0 0 1 443250 + 61086 18260 40748 41670 71196 71196 -0.05347153433035601 SQAQVDKSDY 10 Unmodified _SQAQVDKSDY_ 0 0 0 ENSG00000108424|ENST00000290158|KPNB1;nc|ENSG00000108424|Q14974-2|KPNB1;ENST00000580573.1_1_17:45754418-45755781:+|nuORF ENSG00000108424|ENST00000290158|KPNB1 ENSG00000108424|ENST00000290158|KPNB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3093872070312 2 570.762017 1139.50948 1.0005 0.00057107 2.3425 0.001337 3.343 0.0019081 570.7631462101285 54.717 0.43817 54.717 54.352 54.79 0 39 18 3 0 0 0 0.22941 1 30238 30238 13.906 1.6654 1 2838900 61087 2569 40749 41671 71197 71197 -0.05469250875216858 SQDQMEGHTF 10 Unmodified _SQDQMEGHTF_ 0 0 0 REV__ENSG00000135272|ENST00000393486|MDFIC REV__ENSG00000135272|ENST00000393486|MDFIC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2413940429688 2 590.240395 1178.46624 NaN NaN NaN NaN NaN NaN NaN 90.926 1 90.431 89.931 90.931 -0.49457 0 0 0 0.97302 1 49705 49705 3.5965 1.2938 1 + 61088 20048 40750 41672 71198 71198 -0.11585763924176717 SQDSIINNSQF 11 Unmodified _SQDSIINNSQF_ 0 0 0 ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155 ENSG00000204920|ENST00000270014|ZNF155 ENSG00000204920|ENST00000270014|ZNF155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.7931518554688 2 626.793849 1251.57314 0.10532 6.6013E-05 -2.1896 -0.0013724 -2.0843 -0.0013064 626.792816876823 58.486 0.33286 57.995 57.778 58.111 -0.49079 34 15 3 0 0 0 0.71341 1 31743 31743 2.9952 0 1 1705200 61089 10336 40751 41673 71199 71199 -0.04257890438157119 SQEGYRVTF 9 Unmodified _SQEGYRVTF_ 0 0 0 nc|ENSG00000188089|Q3MJ16-2|PLA2G4E;ENSG00000188089|ENST00000696112|PLA2G4E;nc|ENSG00000188089|Q3MJ16|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E nc|ENSG00000188089|Q3MJ16-2|PLA2G4E MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7648315429688 2 543.764363 1085.51417 0.52844 0.00028735 1.8594 0.0010111 2.3878 0.0012984 543.7647007144288 58.197 0.31951 52.17 52.047 52.366 -6.0275 27 16 2 0 0 0 0.015445 1 37282 37282 68.081 16.665 1 15712000 61090 9627 40752 41674 71200 71200 -0.025163219418118388 SQEHRNHR 8 Unmodified _SQEHRNHR_ 0 0 0 ENST00000505076.1_1_11:48967299-48973146:+|nuORF;ENSG00000220948|ENST00000534741|TRIM51G ENST00000505076.1_1_11:48967299-48973146:+|nuORF ENST00000505076.1_1_11:48967299-48973146:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7901611328125 2 532.260645 1062.50674 0.41179 0.00021918 0.79521 0.00042326 1.207 0.00064243 532.2610460244489 45.712 0.21365 45.712 45.625 45.838 0 15 10 2 0 0 0 8.7369 1 25000 25000 12.532 0 1 3903500 61091 10549 40753 41675 71201 71201 -0.022016166988805708 SQEPDDSMR 9 Unmodified _SQEPDDSMR_ 0 0 0 REV__ENSG00000142959|ENST00000372207|BEST4 REV__ENSG00000142959|ENST00000372207|BEST4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7903442382812 2 532.719295 1063.42404 0.96909 0.00051625 1.7079 0.00090985 2.677 0.0014261 532.7202488148171 46.159 0.3953 46.159 45.974 46.369 0 21 18 2 0 0 0 0.20139 1 25110 25110 10.824 0 1 3276800 + 61092 20598 40754 41676 71202 71202 -0.10513739332532168 SQERQHSRE 9 Unmodified _SQERQHSRE_ 0 0 0 REV__ENST00000589905.1_1_18:61035021-61048832:+|nuORF REV__ENST00000589905.1_1_18:61035021-61048832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7781372070312 2 578.776325 1155.5381 0.20486 0.00011857 2.0424 0.0011821 2.2472 0.0013006 578.777853194081 62.195 0.32868 62.195 61.996 62.324 0 40 16 3 0 0 0 0.30202 1 34741 34741 17.113 0 1 6942400 + 61093 29144 40755 41677 71203 71203 -0.03345088455421319 SQEYQEALI 9 Unmodified _SQEYQEALI_ 0 0 0 REV__ENSG00000135090|ENST00000392533|TAOK3 REV__ENSG00000135090|ENST00000392533|TAOK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.788330078125 2 540.764029 1079.5135 0.2083 0.00011264 -0.11925 -6.4486E-05 0.089048 4.8154E-05 540.7643814423608 39.866 0.36827 39.866 39.661 40.03 0 60 18 4 0 0 0 0.18882 1 21348 21348 10.824 0 1 6888900 + 61094 20038 40756 41678 71204 71204 -0.023071613815318415 SQFIEQIARPI 11 Unmodified _SQFIEQIARPI_ 0 0 0 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3663940429688 2 651.364244 1300.71394 -0.12141 -7.9084E-05 0.71722 0.00046717 0.59581 0.00038809 651.3646981937655 69.872 0.31224 69.393 69.203 69.515 -0.47903 39 13 4 0 0 0 0.33612 2 38155 38155;38257 24.882 6.5085 1 5936900 + 61095 21981 40757 41679 71205;71206 71205 0.0756073300594835 SQFIEQIARPI 11 Unmodified _SQFIEQIARPI_ 0 0 0 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8656616210938 2 651.364244 1300.71394 0.77616 0.00050557 0.069134 4.5031E-05 0.8453 0.0005506 651.3642580485156 69.243 0.2996 69.273 69.073 69.372 0.030914 49 14 5 0 0 0 0.33612 2 37993 37993;38098 24.882 8.7325 1 33716000 + 61096 21981 40757 41679 71207;71208 71207 0.0756073300594835 SQFIEQIARPI 11 Unmodified _SQFIEQIARPI_ 0 0 0 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8656616210938 2 651.364244 1300.71394 0.77616 0.00050557 0.069134 4.5031E-05 0.8453 0.0005506 651.3642580485156 69.243 0.2996 69.273 69.073 69.372 0.030914 49 14 5 0 0 0 0.29044 1 37993 37993 24.882 24.882 1 33716000 + 61097 21981 40757 41679 71209 71209 0.0756073300594835 SQFIEQIARPI 11 Unmodified _SQFIEQIARPI_ 0 0 0 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 REV__nc|ENSG00000165115|Q86VH2-3|KIF27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 651.364244 1300.71394 -0.12141 -7.9084E-05 0.71722 0.00046717 0.59581 0.00038809 651.3646981937655 69.872 0.31224 69.393 69.203 69.515 -0.47903 0.059633 0.00043092 NaN 24.882 39 13 4 NaN NaN NaN NaN 0 NaN NaN 0 5936900 + 61098 21981 40757 41679 0.0756073300594835 SQFIFEHSY 9 Unmodified _SQFIFEHSY_ 0 0 0 ENSG00000174796|ENST00000311638|THAP6 ENSG00000174796|ENST00000311638|THAP6 ENSG00000174796|ENST00000311638|THAP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2685546875 2 579.266739 1156.51892 0.441 0.00025545 1.2762 0.00073928 1.7172 0.00099474 579.2675211056315 53.353 0.22171 52.901 52.762 52.984 -0.45173 23 10 3 0 0 0 0.039985 1 28874 28874 49.933 26.143 1 2164000 61099 8458 40758 41680 71210 71210 -0.05307437799046966 SQFQTQTQP 9 Unmodified _SQFQTQTQP_ 0 0 0 ENSG00000196428|ENST00000688009|TSC22D2;nc|ENSG00000196428|O75157|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 ENSG00000196428|ENST00000688009|TSC22D2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2980346679688 2 532.753995 1063.49344 -0.41504 -0.00022112 2.6648 0.0014197 2.2498 0.0011986 532.7558290836462 30.015 0.27178 30.015 29.867 30.139 0 31 12 3 0 0 0 0.19994 1 15632 15632 12.241 1.4167 1 5628700 61100 9817 40759 41681 71211 71211 -0.03576912321477721 SQHEFTVHFL 10 Unmodified _SQHEFTVHFL_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34;ENST00000514462.1_1_5:43505848-43515051:-|nuORF ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5404052734375 3 415.540134 1243.59857 -0.00647 -2.6886E-06 1.0703 0.00044474 1.0638 0.00044206 415.54028638104694 20.589 0.18657 20.599 20.488 20.675 0.010551 14 7 3 0 0 0 0.72196 1 10495 10495 0.15932 0 1 533350 61101 8195 40760 41682 71212 71212 -0.0134837112502737 SQHYHQGYY 9 Unmodified _SQHYHQGYY_ 0 0 0 nc|ENSG00000153187|Q00839-2|HNRNPU;ENSG00000153187|ENST00000640218|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU nc|ENSG00000153187|Q00839-2|HNRNPU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8370666503906 3 394.83695 1181.48902 -0.6071 -0.00023971 0.39073 0.00015427 -0.21638 -8.5434E-05 394.8372053518289 17.469 0.21848 17.469 17.316 17.534 0 49 37 2 0 0 0 0.58145 1 8631 8631 2.4985 1.8717 1 727390 61102 6245 40761 41683 71213 71213 -0.09446376744381269 SQIEADFRL 9 Unmodified _SQIEADFRL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7805786132812 2 539.780013 1077.54547 0.5663 0.00030568 3.0141 0.001627 3.5804 0.0019327 539.7798418970372 57.517 0.21473 57.517 57.371 57.585 0 18 9 3 0 0 0 0.11784 1 31991 31991 31.268 7.2478 1 10999000 61103 10191 40762 41684 71214 71214 0.009802510922781948 SQIGPAMNF 9 Unmodified _SQIGPAMNF_ 0 0 0 REV__ENST00000355221.7_3_8:54708306-54708375:-|nuORF REV__ENST00000355221.7_3_8:54708306-54708375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7310485839844 2 482.731477 963.448402 0.028692 1.3851E-05 -0.22225 -0.00010729 -0.19355 -9.3435E-05 482.73097016257503 70.679 0.51978 70.679 70.227 70.747 0 32 24 2 0 0 0 0.55775 1 39341 39341 3.9444 0 1 688310 + 61104 25804 40763 41685 71215 71215 -0.03478434388364349 SQILYYAML 9 Unmodified _SQILYYAML_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000484580.6_1_17:26883511-26887327:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MSMS AL20221201_MKP_PDAC_01 4 551.2882690429688 2 551.286085 1100.55762 NaN NaN NaN NaN NaN NaN NaN 102.21 1 96.03 95.53 96.53 -6.1757 0 0 0 0.82739 1 68594 68594 4.3292 0.73274 1 61105 1454 40764 41686 71216 71216 0.011361515111047993 SQIPAAAF 8 Unmodified _SQIPAAAF_ 0 0 0 ENSG00000006062|ENST00000344686|MAP3K14;ENST00000592267.1_1_17:43342005-43351146:-|nuORF ENSG00000006062|ENST00000344686|MAP3K14 ENSG00000006062|ENST00000344686|MAP3K14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.7154235839844 2 402.716153 803.417754 NaN NaN NaN NaN NaN NaN NaN 54.08 1 54.08 53.58 54.58 0 0 0 0 0.69365 1 30008 30008 28.487 5.3384 1 61106 325 40765 41687 71217 71217 0.008181552888913757 SQITRRKKRKK 11 Unmodified _SQITRRKKRKK_ 0 0 0 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 MSMS AL20221201_MKP_PDAC_01 4 476.9797668457031 3 476.979309 1427.9161 NaN NaN NaN NaN NaN NaN NaN 19.363 1 16.706 16.206 17.206 -2.6564 0 0 0 0.9435 1 10248 10248 0 0 1 61107 3855 40766 41688 71218 71218 0.2192568120199212 SQIWIYGGNKQ 11 Unmodified _SQIWIYGGNKQ_ 0 0 0 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.335205078125 2 647.332944 1292.65134 -0.029283 -1.8956E-05 1.8696 0.0012102 1.8403 0.0011913 647.3343724859507 89.177 0.21861 89.177 89.015 89.234 0 22 10 3 0 0 0 0.7187 1 49297 49297 2.4985 0.84587 1 573120 + 61108 21062 40767 41689 71219 71219 0.016715869377549097 SQKAPAIPA 9 Unmodified _SQKAPAIPA_ 0 0 0 ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.5048217773438 1 882.504343 881.497067 0.10027 8.8486E-05 1.4347 0.0012662 1.535 0.0013546 882.5056529388338 102.95 0.065056 102.95 102.9 102.96 0 4 2 2 0 0 0 0.59218 1 56763 56763 1.8442 1.0506 1 1274600 61109 8880 40768 41690 71220 71220 0.05157802243036258 SQKAPAIPA 9 Unmodified _SQKAPAIPA_ 0 0 0 ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B ENSG00000180043|ENST00000424985|GARIN5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.5061645507812 1 882.504343 881.497067 0.099569 8.787E-05 0.57296 0.00050564 0.67253 0.00059351 882.5049496130067 103.12 0.080521 103.12 103.06 103.14 0 11 5 3 0 0 0 0.59218 1 56855 56855 1.8442 1.8442 1 4577500 61110 8880 40768 41690 71221 71221 0.05157802243036258 SQKCFCIGF 9 Unmodified _SQKCFCIGF_ 0 0 0 REV__ENST00000518047.5_1_5:140905691-140905913:-|nuORF REV__ENST00000518047.5_1_5:140905691-140905913:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7361450195312 2 516.735706 1031.45686 0.4078 0.00021072 -0.031759 -1.6411E-05 0.37604 0.00019431 516.7356362161557 48.65 0.19825 48.606 48.455 48.654 -0.04369 12 9 2 0 0 0 0.55144 1 26274 26274 4.3292 0 1 919070 + 61111 28238 40769 41691 71222 71222 -0.057612037433955265 SQLFNFIPL 9 Unmodified _SQLFNFIPL_ 0 0 0 nc|ENSG00000181690|Q6DJT9-2|PLAG1;ENSG00000181690|ENST00000316981|PLAG1 nc|ENSG00000181690|Q6DJT9-2|PLAG1 nc|ENSG00000181690|Q6DJT9-2|PLAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7987060546875 2 539.800217 1077.58588 -0.042728 -2.3065E-05 1.2192 0.00065811 1.1764 0.00063505 539.8006430307246 54.164 0.32214 54.097 53.921 54.243 -0.066936 40 15 4 0 0 0 0.095405 1 29420 29420 34.102 3.4659 1 4460800 61112 8988 40770 41692 71223 71223 0.05019217482708882 SQLKALRPV 9 Unmodified _SQLKALRPV_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1;nc|ENSG00000145734|A6H8Y1-5|BDP1;ENST00000508157.3_1_5:70790975-70807035:+|nuORF nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.999755859375 2 506.319109 1010.62366 1.2932 0.00065475 -0.42092 -0.00021312 0.87223 0.00044163 506.31898842128874 33.729 0.32127 29.743 29.608 29.929 -3.9853 28 17 2 0 0 0 0.18882 1 19310 19310 10.824 3.5347 1 6478100 61113 5719 40771 41693 71224 71224 0.11877728468175519 SQLKMLFV 8 Unmodified _SQLKMLFV_ 0 0 0 REV__ENSG00000144635|ENST00000273130|DYNC1LI1 REV__ENSG00000144635|ENST00000273130|DYNC1LI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2786560058594 2 483.278063 964.541574 NaN NaN NaN NaN NaN NaN NaN 84.872 1 84.935 84.435 85.435 0.063171 0 0 0 0.97444 1 46975 46975 5.2307 2.6532 1 + 61114 20720 40772 41694 71225 71225 0.05788490064878715 SQLKMTFL 8 Unmodified _SQLKMTFL_ 0 0 0 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2673950195312 2 484.267696 966.520839 1.1903 0.00057643 -1.4329 -0.00069391 -0.2426 -0.00011748 484.26731883445245 61.564 0.50757 55.389 55.167 55.674 -6.1757 85 25 4 0 0 0 0.48583 1 39647 39647 36.127 0.082828 1 452660000 + 61115 17522 40773 41695 71226 71226 0.036238996851921 SQLKQPGR 8 Unmodified _SQLKQPGR_ 0 0 0 REV__ENST00000559195.5_1_14:103592737-103596345:+|nuORF REV__ENST00000559195.5_1_14:103592737-103596345:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2648620605469 2 457.264333 912.514114 0.40107 0.0001834 0.60698 0.00027755 1.008 0.00046094 457.2645024804598 83.706 0.57307 83.208 82.914 83.487 -0.49751 69 23 4 0 0 0 0.80992 1 45719 45719 0.69038 0 1 18590000 + 61116 28811 40774 41696 71227 71227 0.05435722848858404 SQLLLSQFL 9 Unmodified _SQLLLSQFL_ 0 0 0 REV__ENST00000401558.6_1_2:61765136-61765295:-|nuORF REV__ENST00000401558.6_1_2:61765136-61765295:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2724609375 2 524.8055 1047.59645 0.30288 0.00015895 -1.0719 -0.00056252 -0.76899 -0.00040357 524.8049036004662 76.016 0.31455 75.536 75.369 75.684 -0.47945 21 13 2 0 0 0 0.18811 1 41622 41622 17.113 0.96379 1 1048700 + 61117 26608 40775 41697 71228 71228 0.07455200137133033 SQLLRFDLIPF 11 Unmodified _SQLLRFDLIPF_ 0 0 0 nc|ENSG00000047644|Q9ULE0-2|WWC3;ENSG00000047644|ENST00000380861|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 nc|ENSG00000047644|Q9ULE0-2|WWC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 674.8865356445312 2 674.884813 1347.75507 0.45833 0.00030932 1.5805 0.0010666 2.0388 0.001376 674.8855655982451 79.549 0.27545 79.604 79.468 79.744 0.054977 20 10 3 0 0 0 0.65108 1 44002 44002 8.7454 0 1 1447400 61118 690 40776 41698 71229 71229 0.0951049404538935 SQLQIVIFL 9 Unmodified _SQLQIVIFL_ 0 0 0 ENSG00000184954|ENST00000327335|OR6C70 ENSG00000184954|ENST00000327335|OR6C70 ENSG00000184954|ENST00000327335|OR6C70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8251342773438 2 530.823692 1059.63283 0.81939 0.00043495 1.9063 0.0010119 2.7257 0.0014469 530.8248044150454 70.539 0.27414 70.574 70.424 70.698 0.035507 27 12 3 0 0 0 0.1685 1 38816 38816 26.268 3.5319 1 2375900 61119 9307 40777 41699 71230 71230 0.10540077033851958 SQLQPIQYQYQ 11 Unmodified _SQLQPIQYQYQ_ 0 0 0 nc|ENSG00000090889|O95239-2|KIF4A;ENSG00000090889|ENST00000374403|KIF4A nc|ENSG00000090889|O95239-2|KIF4A nc|ENSG00000090889|O95239-2|KIF4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2345581054688 3 465.90162 1394.68303 0.38775 0.00018065 -0.97538 -0.00045443 -0.58763 -0.00027378 466.23493180827 57.352 0.54943 56.862 56.474 57.024 -0.48974 47 25 3 0 0 0 0.69708 1 31027 31027 2.084 0.62885 1 4704100 61120 1571 40778 41700 71231 71231 0.0014753490104340017 SQLSYLTI 8 Unmodified _SQLSYLTI_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-3|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.5034790039062 1 924.503674 923.496398 0.98475 0.0009104 -0.2139 -0.00019775 0.77085 0.00071265 924.5033059886299 74.509 0.58591 68.334 68.02 68.606 -6.1757 61 30 3 0 0 0 0.27285 1 48688 48688 58.679 0 1 34123000 61121 7218 40779 41701 71232 71232 0.031589628033202644 SQLTIIPQDPI 11 Unmodified _SQLTIIPQDPI_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48755439-48768558:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8450927734375 2 612.845353 1223.67615 0.55715 0.00034145 -2.0554 -0.0012597 -1.4983 -0.00091821 613.3456834886921 88.255 0.22269 87.75 87.602 87.825 -0.50423 15 9 2 0 0 0 0.65846 1 48281 48281 8.1555 0.8663 1 469540 61122 2613 40780 41702 71233 71233 0.07326222020469686 SQLTSLVAV 9 Unmodified _SQLTSLVAV_ 0 0 0 REV__ENSG00000182747|ENST00000331858|SLC35D3 REV__ENSG00000182747|ENST00000331858|SLC35D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2688293457031 2 459.26875 916.522947 0.21469 9.8602E-05 -0.4786 -0.0002198 -0.2639 -0.0001212 459.2683710445032 70.741 0.37684 70.263 70.083 70.459 -0.47735 60 24 4 0 0 0 0.10734 1 38637 38637 32.305 0.18852 1 17825000 + 61123 23291 40781 41703 71234 71234 0.06134651694662807 SQLTSLVAV 9 Unmodified _SQLTSLVAV_ 0 0 0 REV__ENSG00000182747|ENST00000331858|SLC35D3 REV__ENSG00000182747|ENST00000331858|SLC35D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2690124511719 2 459.26875 916.522947 0.86586 0.00039766 -0.70683 -0.00032463 0.15903 7.3036E-05 459.2682400442978 77.872 0.59875 71.696 71.409 72.008 -6.1757 83 33 3 0 0 0 0.044011 2 51089 50963;51089 47.749 9.7747 1 60494000 + 61124 23291 40781 41703 71235;71236 71236 0.06134651694662807 SQLWKRNGP 9 Unmodified _SQLWKRNGP_ 0 0 0 ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000272391|A8CG34|POM121C;ENSG00000272391|ENST00000615331|POM121C;ENST00000479864.1_1_7:75054840-75066915:-|nuORF ENSG00000196313|ENST00000434423|POM121 ENSG00000196313|ENST00000434423|POM121 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7701416015625 2 543.296165 1084.57778 0.45273 0.00024596 -1.223 -0.00066448 -0.77032 -0.00041851 543.2953651323675 53.127 0.22324 53.127 53.039 53.263 0 22 9 3 0 0 0 0.17718 1 29398 29398 20.454 3.3407 1 3228400 61125 9796 40782 41704 71237 71237 0.03887083285940207 SQLYRPFY 8 Unmodified _SQLYRPFY_ 0 0 0 ENST00000412976.1_1_10:65929632-65930097:-|nuORF;ENSG00000006634|ENST00000265728|DBF4 ENST00000412976.1_1_10:65929632-65930097:-|nuORF ENST00000412976.1_1_10:65929632-65930097:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7755737304688 2 537.274367 1072.53418 -0.51565 -0.00027704 -0.63927 -0.00034346 -1.1549 -0.00062051 537.2741420791644 30.054 0.43518 30.054 29.888 30.324 0 43 20 3 0 0 0 0.75262 1 15536 15536 12.532 3.1841 1 4822800 61126 342 40783 41705 71238 71238 0.0008147378880494216 SQMLVSTSGF 10 Unmodified _SQMLVSTSGF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7777709960938 2 528.755149 1055.49575 0.27884 0.00014744 3.5671 0.0018861 3.846 0.0020336 528.7571898155019 40.943 0.11657 40.639 40.601 40.718 -0.30304 7 5 2 0 0 0 0.23227 1 21706 21706 3.5965 0 1 1391500 61127 873 40784 41706 71239 71239 -0.029781999080114474 SQNENERMSST 11 Unmodified _SQNENERMSST_ 0 0 0 nc|ENSG00000174500|Q8N6F7-3|GCSAM;ENSG00000174500|ENST00000308910|GCSAM;nc|ENSG00000174500|Q8N6F7-2|GCSAM nc|ENSG00000174500|Q8N6F7-3|GCSAM nc|ENSG00000174500|Q8N6F7-3|GCSAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.772216796875 2 641.770048 1281.52554 NaN NaN NaN NaN NaN NaN NaN 3.2496 1 3.1776 2.6776 3.6776 -0.072029 0 0 0 0.94337 1 1599 1599 0 0 1 61128 8428 40785 41707 71240 71240 -0.1039591270064193 SQNKWKVQRR 10 Unmodified _SQNKWKVQRR_ 0 0 0 REV__chr5:64695664-64717889|152|62.65|0.69|6.51|+|1|SHISAL2B,SHISAL2B|1 REV__chr5:64695664-64717889|152|62.65|0.69|6.51|+|1|SHISAL2B,SHISAL2B|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.3792724609375 2 665.378552 1328.74255 0.83712 0.000557 1.6216 0.001079 2.4588 0.001636 665.3794824070792 80.955 0.3103 80.463 80.251 80.561 -0.49247 31 13 3 0 0 0 0.6785 1 44373 44373 5.2969 1.3525 1 2637700 + 61129 16811 40786 41708 71241 71241 0.09132895425750576 SQNPWGLISL 10 Unmodified _SQNPWGLISL_ 0 0 0 REV__ENST00000375663.7_1_6:31749330-31749528:-|nuORF REV__ENST00000375663.7_1_6:31749330-31749528:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.8663635253906 3 372.201229 1113.58186 0.018399 6.8482E-06 -1.0933 -0.00040693 -1.0749 -0.00040008 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.66569 2 18503 18503;18940 9.544 2.4423 1 285750000 + 61130 24164 40787 41709 71242;71243 71242 0.029611279890104925 SQNQVKQDAM 10 Unmodified _SQNQVKQDAM_ 0 0 0 ENST00000315249.11_1_17:33338774-33338990:-|nuORF ENST00000315249.11_1_17:33338774-33338990:-|nuORF ENST00000315249.11_1_17:33338774-33338990:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7722778320312 2 574.771862 1147.52917 1.1084 0.00063709 -0.27926 -0.00016051 0.82916 0.00047658 574.7717488327717 55.086 2.0448 49.165 48.626 50.671 -5.9211 253 123 4 0 0 0 0.48505 1 35898 35898 17.113 0 1 270170000 61131 11729 40788 41710 71244 71244 -0.03869198136112573 SQPCVLGWESF 11 Unmodified _SQPCVLGWESF_ 0 0 0 nc|ENSG00000124508|Q8WVV5-5|BTN2A2;nc|ENSG00000124508|Q8WVV5-4|BTN2A2;ENSG00000124508|ENST00000356709|BTN2A2 nc|ENSG00000124508|Q8WVV5-5|BTN2A2 nc|ENSG00000124508|Q8WVV5-5|BTN2A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.2938842773438 2 626.786981 1251.55941 0.76398 0.00047885 1.4456 0.00090606 2.2095 0.0013849 626.7853389557524 83.377 1.2228 77.201 76.79 78.013 -6.1757 145 65 3 0 0 0 0.39848 1 54764 54764 21.59 0.053175 1 34436000 61132 3793 40789 41711 71245 71245 -0.05630839470950377 SQPDFAPPPI 10 Unmodified _SQPDFAPPPI_ 0 0 0 REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7702026367188 2 534.771657 1067.52876 -0.60099 -0.00032139 -2.7997 -0.0014972 -3.4007 -0.0018186 534.7701890248778 18.998 0.14828 19.022 18.902 19.05 0.023106 13 9 2 0 0 0 0.69064 1 9544 9544 3.9444 0 1 666820 + 61133 28036 40790 41712 71246 71246 -0.0023024979368528875 SQPELVTGP 9 Unmodified _SQPELVTGP_ 0 0 0 REV__ENSG00000159496|ENST00000290691|RGL4 REV__ENSG00000159496|ENST00000290691|RGL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.4835815429688 1 927.478188 926.470912 0.74552 0.00069146 -1.3585 -0.00126 -0.61296 -0.00056851 927.4768141693186 42.14 0.47473 37.455 37.173 37.648 -4.6846 69 29 3 0 0 0 0.2001 1 25284 25284 23.148 2.6948 1 32132000 + 61134 21487 40791 41713 71247 71247 0.004734882809202645 SQPNLRAVTL 10 Unmodified _SQPNLRAVTL_ 0 0 0 REV__ENST00000225873.8_2_17:33905316-33905562:-|nuORF REV__ENST00000225873.8_2_17:33905316-33905562:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8164672851562 2 549.81693 1097.61931 1.154 0.00063448 -1.1184 -0.00061493 0.035559 1.9551E-05 549.8162041778975 21.393 0.36565 18.658 18.535 18.9 -2.7348 57 33 2 0 0 0 0.34249 1 11423 11423 24.991 0.97039 1 6955100 + 61135 24787 40792 41714 71248 71248 0.07440219254635849 SQPRQHFY 8 Unmodified _SQPRQHFY_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7597045898438 2 531.759415 1061.50428 0.33673 0.00017906 -0.80614 -0.00042867 -0.46942 -0.00024962 531.7588910962032 77.545 0.50609 77.545 77.265 77.771 0 113 36 4 0 0 0 0.76266 1 43210 43210 11.64 0.84079 1 52787000 61136 3070 40793 41715 71249 71249 -0.02401465156526683 SQPTELRQRHE 11 Unmodified _SQPTELRQRHE_ 0 0 0 ENST00000401540.2_1_2:130750765-130751497:+|nuORF ENST00000401540.2_1_2:130750765-130751497:+|nuORF ENST00000401540.2_1_2:130750765-130751497:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2184448242188 3 460.904135 1379.69057 0.51472 0.00023724 1.0943 0.00050438 1.609 0.00074162 461.2387964008829 31.54 0.15624 31.54 31.463 31.619 0 11 7 2 0 0 0 0.30565 1 16476 16476 2.2527 0.92309 1 1092800 61137 12882 40794 41716 71250 71250 0.015916872213438182 SQPTPSLV 8 Unmodified _SQPTPSLV_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.7276916503906 2 414.726718 827.438883 NaN NaN NaN NaN NaN NaN NaN 65.925 1 65.925 65.425 66.425 0 0 0 0 0.97444 1 36769 36769 0.6015 0 1 61138 6480 40795 41717 71251 71251 0.01826120597775116 SQQSAYFLL 9 Unmodified _SQQSAYFLL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7716064453125 2 528.771657 1055.52876 0.40681 0.00021511 -1.5853 -0.00083826 -1.1785 -0.00062315 528.7710739669359 79.073 0.62157 78.587 78.349 78.971 -0.48595 71 26 4 0 0 0 0.14 2 43425 43327;43425 29.082 7.3349 1 2726000 61139 8367 40796 41718 71252;71253 71253 0.00321750206330762 SQRCRHVI 8 Unmodified _SQRCRHVI_ 0 0 0 REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7698669433594 2 499.76926 997.523967 0.19556 9.7735E-05 0.6867 0.00034319 0.88226 0.00044093 499.7698131755815 71.916 0.14701 71.916 71.861 72.008 0 9 6 2 0 0 0 0.72953 1 40065 40065 14.582 0 1 842420 + 61140 20634 40797 41719 71254 71254 0.02510587582582957 SQRIQRPGR 9 Unmodified _SQRIQRPGR_ 0 0 0 ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF ENST00000534320.5_1_11:587364-591403:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3181762695312 2 549.317963 1096.62137 1.558 0.00085582 -1.0528 -0.00057834 0.50515 0.00027749 549.3172897914228 92.502 0.47018 92.532 92.308 92.778 0.030197 39 17 3 0 0 0 0.55144 1 51427 51427 4.3292 0.38484 1 17673000 61141 14950 40798 41720 71255 71255 0.0769269278309821 SQRITSVAMKS 11 Unmodified _SQRITSVAMKS_ 0 0 0 ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C MSMS AL20221201_MKP_PDAC_01 4 604.327392578125 2 604.326805 1206.63906 NaN NaN NaN NaN NaN NaN NaN 45.66 1 40.705 40.205 41.205 -4.9549 0 0 0 0.88164 1 28071 28071 8.1555 0.8663 1 61142 8703 40799 41721 71256 71256 0.04400227203063878 SQRLFFGLLL 10 Unmodified _SQRLFFGLLL_ 0 0 0 ENST00000563356.5_1_16:75182509-75191064:+|nuORF ENST00000563356.5_1_16:75182509-75191064:+|nuORF ENST00000563356.5_1_16:75182509-75191064:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5738220214844 3 398.572886 1192.69683 0.34092 0.00013588 1.4122 0.00056286 1.7531 0.00069874 398.57340308969407 69.206 0.20241 69.237 69.093 69.295 0.030914 17 9 2 0 0 0 0.72153 1 38043 38043 0.50596 0.09769 1 2333500 61143 15361 40800 41722 71257 71257 0.10818857190815834 SQRRRLLVPA 10 Unmodified _SQRRRLLVPA_ 0 0 0 ENSG00000104689|ENST00000221132|TNFRSF10A;ENST00000523752.5_1_8:22880186-22885396:-|nuORF;ENST00000523504.5_1_8:22880186-22926453:-|nuORF;nc|ENSG00000120889|O14763-2|TNFRSF10B;ENSG00000120889|ENST00000276431|TNFRSF10B ENSG00000104689|ENST00000221132|TNFRSF10A;ENST00000523752.5_1_8:22880186-22885396:-|nuORF ENST00000523752.5_1_8:22880186-22885396:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2491455078125 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 37.18 1 37.18 36.68 37.68 0 0 0 0 0.99897 1 19758 19758 0.77653 0.27058 1 61144 2222;3550 40801 41723 71258 71258 0.14134698402403956 SQRSTFNHHQ 10 Unmodified _SQRSTFNHHQ_ 0 0 0 ENSG00000178917|ENST00000436261|ZNF852;ENSG00000196345|ENST00000426540|ZKSCAN7 ENSG00000178917|ENST00000436261|ZNF852 ENSG00000178917|ENST00000436261|ZNF852 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5300903320312 3 414.53052 1240.56973 -0.5499 -0.00022795 1.6097 0.00066726 1.0598 0.00043931 414.53077254736417 18.77 0.20024 18.793 18.701 18.902 0.023106 44 26 2 0 0 0 0.72292 1 9424 9424 0.12286 0 1 611660 61145 8781 40802 41724 71259 71259 -0.04093095701477978 SQSPADLEEKK 11 Unmodified _SQSPADLEEKK_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3121948242188 2 616.311874 1230.6092 -0.34129 -0.00021034 -0.68354 -0.00042127 -1.0248 -0.00063161 616.3114185237357 27.392 0.31962 27.392 27.232 27.552 0 47 15 4 0 0 0 0.53952 1 14172 14172 14.405 2.1647 1 22704000 61146 9309 40803 41725 71260 71260 0.00311566738696456 SQTFVNPHV 9 Unmodified _SQTFVNPHV_ 0 0 0 nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000602029.1_1_19:50519188-50519419:-|nuORF;ENST00000599138.5_1_19:50512054-50519419:-|nuORF;ENST00000424804.6_1_19:50496160-50519419:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2646484375 2 514.761623 1027.50869 0.59891 0.0003083 1.6941 0.00087205 2.293 0.0011803 514.7613906006374 36.797 0.28832 36.797 36.648 36.936 0 23 13 2 0 0 0 0.094149 1 19512 19512 34.402 10.381 1 6442300 61147 2272 40804 41726 71261 71261 -0.003960007336445415 SQTFVNPHV 9 Unmodified _SQTFVNPHV_ 0 0 0 nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3;ENST00000602029.1_1_19:50519188-50519419:-|nuORF;ENST00000599138.5_1_19:50512054-50519419:-|nuORF;ENST00000424804.6_1_19:50496160-50519419:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 nc|ENSG00000105053|Q8IV63-3|VRK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.76171875 2 514.761623 1027.50869 -0.32627 -0.00016795 1.2325 0.00063445 0.90623 0.00046649 514.7622761041479 37.068 0.21286 36.818 36.729 36.942 -0.2497 15 8 3 0 0 0 0.06294 1 19474 19474 41.84 17.819 1 1412400 61148 2272 40804 41726 71262 71262 -0.003960007336445415 SQTLQTFKARQ 11 Unmodified _SQTLQTFKARQ_ 0 0 0 nc|ENSG00000005961|P08514-3|ITGA2B;nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B nc|ENSG00000005961|P08514-3|ITGA2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1307.310302734375 1 1307.70662 1306.69935 0.0023941 3.1308E-06 0.12217 0.00015977 0.12457 0.0001629 1307.7097355015596 85.112 0.079987 78.936 78.877 78.957 -6.1757 5 4 2 0 0 0 0.29817 1 56038 56038 4.897 0 1 9770900 61149 321 40805 41727 71263 71263 0.05826660857792376 SQTRVRSLD 9 Unmodified _SQTRVRSLD_ 0 0 0 REV__ENST00000588831.5_1_19:36428245-36428407:+|nuORF REV__ENST00000588831.5_1_19:36428245-36428407:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1061.74169921875 1 1061.5698 1060.56252 0.67641 0.00071806 0.81121 0.00086115 1.4876 0.0015792 1061.5715427263174 60.135 0.17008 60.082 59.958 60.128 -0.053059 12 9 2 0 0 0 0.20139 1 32744 32744 6.7232 0 1 7334000 + 61150 29129 40806 41728 71264 71264 0.03466171698096332 SQTTFWEEV 9 Unmodified _SQTTFWEEV_ 0 0 0 REV__CON__Q9D646 REV__CON__Q9D646 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.173828125 3 376.173228 1125.49785 -0.53365 -0.00020075 0.6334 0.00023827 0.099744 3.7521E-05 376.1734722919591 18.46 0.14611 18.46 18.383 18.529 0 45 19 3 0 0 0 0.58865 1 9160 9160 1.0715 0.29493 1 1931800 + + 61151 16888 40807 41729 71265 71265 -0.05987447898587561 SQTTRLPPITY 11 Unmodified _SQTTRLPPITY_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1276.610717773438 1 1276.68958 1275.6823 0.9077 0.0011588 -2.9117 -0.0037173 -2.004 -0.0025584 1276.686221206706 69.08 0.13422 69.111 69.073 69.207 0.030914 9 6 2 0 0 0 0.73506 1 37954 37954 0.96228 0.56156 1 960880 61152 3538 40808 41730 71266 71266 0.055487402519929674 SQVKARPL 8 Unmodified _SQVKARPL_ 0 0 0 REV__ENSG00000178015|ENST00000380007|GPR150 REV__ENSG00000178015|ENST00000380007|GPR150 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7756652832031 2 449.777077 897.5396 NaN NaN NaN NaN NaN NaN NaN 66.753 1 66.753 66.253 67.253 0 0 0 0 0.97444 1 37230 37230 5.2307 0 1 + 61153 23016 40809 41731 71267 71267 0.08673197371274455 SQVQGTPN 8 Unmodified _SQVQGTPN_ 0 0 0 REV__nc|ENSG00000166123|Q8TD30-2|GPT2 REV__nc|ENSG00000166123|Q8TD30-2|GPT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.7347717285156 2 415.703774 829.392996 0.36467 0.00015159 2.2622 0.00094041 2.6269 0.001092 415.7044663039911 53.844 0.21456 53.844 53.685 53.899 0 14 9 2 0 0 0 8.7369 1 29824 29824 19.257 2.3147 1 1894000 + 61154 22084 40810 41732 71268 71268 -0.02852524584477578 SQWHGTEES 9 Unmodified _SQWHGTEES_ 0 0 0 REV__nc|ENSG00000143375|Q9P2M7-2|CGN REV__nc|ENSG00000143375|Q9P2M7-2|CGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7191772460938 2 530.720153 1059.42575 0.9258 0.00049134 -1.6872 -0.00089541 -0.76137 -0.00040407 530.7191977743742 65.955 0.2878 65.965 65.813 66.101 0.0095596 36 14 4 0 0 0 0.52067 1 36158 36158 6.2058 0 1 6158900 + 61155 20631 40811 41733 71269 71269 -0.10158362252286679 SQYQGVVVY 9 Unmodified _SQYQGVVVY_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;ENST00000565034.1_1_16:69373956-69375289:+|nuORF ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7628173828125 2 521.763832 1041.51311 0.095786 4.9978E-05 0.16427 8.5708E-05 0.26005 0.00013569 521.7635405492094 48.91 0.43348 48.91 48.761 49.194 0 31 13 3 0 0 0 0.012668 1 26838 26838 72.968 40.662 1 10010000 61156 4426 40812 41734 71270 71270 -0.0059853631069017865 SQYTWYLY 8 Unmodified _SQYTWYLY_ 0 0 0 REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF REV__ENST00000558588.5_1_15:40583969-40599873:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1754760742188 3 375.17468 1122.50221 1.6261 0.00061008 1.6635 0.00062412 3.2896 0.0012342 375.17516600067546 19.825 0.36644 17.169 17.003 17.369 -2.6564 49 22 3 0 0 0 0.80143 2 10485 10485;10590 3.9444 0.83066 1 5158800 + 61157 20273 40813 41735 71271;71272 71271 -0.05413938685001085 SRADQFEYV 9 Unmodified _SRADQFEYV_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7611083984375 2 557.76182 1113.50909 -0.36739 -0.00020492 -1.115 -0.00062189 -1.4824 -0.00082681 557.7613004296268 27.806 0.20297 27.806 27.721 27.924 0 14 9 2 0 0 0 0.43463 1 14361 14361 10.824 0 1 788140 61158 16329 40814 41736 71273 71273 -0.043126258044367205 SRADQFEYVM 10 Oxidation (M) _SRADQFEYVM(Oxidation (M))_ SRADQFEYVM(1) SRADQFEYVM(40) 0 0 1 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.2801513671875 2 631.27952 1260.54449 1.0903 0.0006883 -1.2271 -0.00077462 -0.13674 -8.6319E-05 631.2788927795145 41.005 0.28752 36.397 36.211 36.499 -4.6079 29 17 3 0 0 0 0.14688 1 24544 24544 40.239 16.449 1 9226900 61159 16329 40815 41737 71274 71274 1813 -0.0753633133895164 SRADQFEYVM 10 Unmodified _SRADQFEYVM_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MSMS AL20221201_MKP_PDAC_01 4 623.2811279296875 2 623.282063 1244.54957 NaN NaN NaN NaN NaN NaN NaN 56.303 1 50.327 49.827 50.827 -5.9769 0 0 0 0.20946 1 35916 35916 42.312 19.576 1 61160 16329 40815 41738 71275 71275 -0.0629202747634281 SRAPVFLQF 9 Unmodified _SRAPVFLQF_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7980346679688 2 532.798009 1063.58147 0.4692 0.00024999 0.053386 2.8444E-05 0.52259 0.00027844 532.7982553200319 71.957 0.28162 71.996 71.829 72.111 0.039024 22 13 2 0 0 0 0.20507 1 39593 39593 22.658 7.8198 1 3311700 61161 9014 40816 41739 71276 71276 0.052217530597772566 SRAQLHGA 8 Unmodified _SRAQLHGA_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2276611328125 2 420.227751 838.440949 -0.57999 -0.00024373 0.87681 0.00036846 0.29682 0.00012473 420.2280395643041 18.136 0.18145 18.136 18.046 18.228 0 42 19 3 0 0 0 0.80722 1 8962 8962 2.3027 0 1 2171200 61162 5448 40817 41740 71277 71277 0.015265941262214255 SRAQLHGA 8 Unmodified _SRAQLHGA_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2281799316406 2 420.227751 838.440949 NaN NaN NaN NaN NaN NaN NaN 18.112 1 18.126 17.626 18.626 0.013865 0 0 0 0.97444 1 9056 9056 2.3027 0 1 61163 5448 40817 41740 71278 71278 0.015265941262214255 SRCETRITLL 10 Unmodified _SRCETRITLL_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.3276977539062 2 596.329347 1190.64414 0.35624 0.00021244 -1.2365 -0.00073739 -0.8803 -0.00052495 596.3273215413395 58.817 0.24133 58.326 58.232 58.474 -0.49079 25 11 3 0 0 0 0.43662 1 31982 31982 12.241 0 1 7727900 + 61164 20128 40818 41741 71279 71279 0.05644531065672709 SRCETRITLL 10 Unmodified _SRCETRITLL_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 596.3295288085938 2 596.329347 1190.64414 NaN NaN NaN NaN NaN NaN NaN 88.845 1 82.67 82.17 83.17 -6.1757 0 0 0 0.50527 1 58631 58631 29.841 8.0939 1 + 61165 20128 40818 41741 71280 71280 0.05644531065672709 SRCWMQCGF 9 Unmodified _SRCWMQCGF_ 0 0 0 REV__ENST00000588822.1_1_17:74723429-74729181:+|nuORF REV__ENST00000588822.1_1_17:74723429-74729181:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2246704101562 2 559.222439 1116.43033 0.25872 0.00014468 0.2319 0.00012968 0.49061 0.00027436 559.2227003787411 56.554 0.2104 56.554 56.424 56.635 0 14 8 2 0 0 0 0.58466 1 31464 31464 2.3027 0 1 819600 + 61166 29128 40819 41742 71281 71281 -0.12323215906371843 SREALAPME 9 Unmodified _SREALAPME_ 0 0 0 REV__ENST00000307145.3_2_15:31665219-31665552:+|nuORF REV__ENST00000307145.3_2_15:31665219-31665552:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2459106445312 2 502.247492 1002.48043 -0.18605 -9.3445E-05 -2.6566 -0.0013343 -2.8426 -0.0014277 502.24602229887734 65.504 0.28886 65.02 64.835 65.124 -0.48428 19 13 2 0 0 0 0.08691 1 35757 35757 36.127 0 1 1548500 + 61167 25387 40820 41743 71282 71282 -0.020710667052185272 SREDSNSSSEK 11 Unmodified _SREDSNSSSEK_ 0 0 0 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-4|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1 nc|ENSG00000139155|Q9NYB5-2|SLCO1C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2681274414062 2 613.268195 1224.52184 NaN NaN NaN NaN NaN NaN NaN 8.6152 1 8.6328 8.1328 9.1328 0.017581 0 0 0 0.9435 1 4286 4286 0 0 1 61168 5128 40821 41744 71283 71283 -0.08144259202867943 SREEIRNRN 9 Unmodified _SREEIRNRN_ 0 0 0 REV__ENSG00000184599|ENST00000361886|TAFA3 REV__ENSG00000184599|ENST00000361886|TAFA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.3074340820312 2 587.307792 1172.60103 NaN NaN NaN NaN NaN NaN NaN 23.498 1 23.498 22.998 23.998 0 0 0 0 0.85798 1 11979 11979 0.52476 0 1 + 61169 23429 40822 41745 71284 71284 0.021634773326240975 SREFSSMDTF 10 Unmodified _SREFSSMDTF_ 0 0 0 ENSG00000053524|ENST00000328913|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.175537109375 3 402.841372 1205.50229 0.18193 7.3287E-05 0.94644 0.00038127 1.1284 0.00045455 402.8417332812163 65.488 0.36001 65.003 64.835 65.195 -0.48428 49 16 4 0 0 0 0.56348 2 35695 35695;35798 15.739 6.3913 1 9817400 61170 747 40823 41746 71285;71286 71285 -0.09224306747296396 SREFSSMDTF 10 Unmodified _SREFSSMDTF_ 0 0 0 ENSG00000053524|ENST00000328913|MCF2L2;nc|ENSG00000053524|Q86YR7-4|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 ENSG00000053524|ENST00000328913|MCF2L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 402.841372 1205.50229 0.36719 0.00014792 1.2009 0.00048378 1.5681 0.0006317 402.841821174135 65.067 0.26527 65.067 64.895 65.16 7.6294E-06 0.031791 0.00018341 NaN 15.739 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5512900 61171 747 40823 41746 -0.09224306747296396 SREGDWKLV 9 Unmodified _SREGDWKLV_ 0 0 0 ENST00000486993.1_1_10:72575788-72575875:+|nuORF ENST00000486993.1_1_10:72575788-72575875:+|nuORF ENST00000486993.1_1_10:72575788-72575875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8611145019531 3 363.861096 1088.56146 -0.25908 -9.427E-05 0.24638 8.9649E-05 -0.012702 -4.6218E-06 363.86132214986503 32.74 0.23771 32.581 32.407 32.645 -0.15918 11 9 2 0 0 0 0.54213 1 17081 17081 3.0723 0.98626 1 1819900 61172 14191 40824 41747 71287 71287 0.020719573291671622 SREQAIALL 9 Unmodified _SREQAIALL_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7943420410156 2 500.792924 999.571294 -0.0048559 -2.4318E-06 -2.3851 -0.0011945 -2.39 -0.0011969 500.7949375089898 65.257 0.46796 64.773 64.511 64.979 -0.48428 57 21 4 0 0 0 0.10247 1 35622 35622 32.786 0.66872 1 5100800 61173 1270 40825 41748 71288 71288 0.07149145334562945 SREQAIALL 9 Unmodified _SREQAIALL_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7958679199219 2 500.792924 999.571294 0.94594 0.00047372 -0.78317 -0.00039221 0.16277 8.1512E-05 501.2923328911465 75.432 1.1841 69.256 68.801 69.986 -6.1757 96 64 2 0 0 0 0.1685 1 49715 49715 26.268 2.4784 1 13266000 61174 1270 40825 41748 71289 71289 0.07149145334562945 SRERRDRHHG 10 Unmodified _SRERRDRHHG_ 0 0 0 REV__ENST00000476744.5_1_3:156866032-156867533:-|nuORF REV__ENST00000476744.5_1_3:156866032-156867533:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.335205078125 2 653.335207 1304.65586 NaN NaN NaN NaN NaN NaN NaN 91.907 1 91.907 91.407 92.407 0 0 0 0 1.0061 1 50824 50824 0 0 1 + 61175 21799 40826 41749 71290 71290 0.015719089238928063 SRFLNKQPY 9 Unmodified _SRFLNKQPY_ 0 0 0 ENSG00000064601|ENST00000646241|CTSA;nc|ENSG00000064601|P10619-2|CTSA;ENST00000484855.2_1_20:44526619-44527086:+|nuORF ENSG00000064601|ENST00000646241|CTSA ENSG00000064601|ENST00000646241|CTSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8772277832031 3 384.876857 1151.60874 0.17444 6.7136E-05 0.3052 0.00011746 0.47963 0.0001846 384.8770462718692 26.111 0.11674 26.138 26.067 26.183 0.026951 7 4 2 0 0 0 0.14594 1 13553 13553 27.088 22.682 1 2278400 61176 878 40827 41750 71291 71291 0.03900236600179596 SRGDFVVEY 9 Unmodified _SRGDFVVEY_ 0 0 0 ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A;ENST00000437519.5_1_12:123868737-123892247:+|nuORF ENSG00000183955|ENST00000402868|KMT5A ENSG00000183955|ENST00000402868|KMT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2592163085938 2 536.258914 1070.50327 0.1545 8.2854E-05 -0.89237 -0.00047854 -0.73787 -0.00039569 536.2586677354452 45.5 0.28467 45.5 45.379 45.664 0 54 15 5 0 0 0 0.025842 1 24771 24771 57.722 23.32 1 61963000 61177 9211 40828 41751 71292 71292 -0.029157243160852886 SRGGLRGLLR 10 Unmodified _SRGGLRGLLR_ 0 0 0 ENST00000268070.8_1_15:100514484-100533361:-|nuORF ENST00000268070.8_1_15:100514484-100533361:-|nuORF ENST00000268070.8_1_15:100514484-100533361:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2179870605469 3 362.228113 1083.66251 0.52597 0.00019052 0.59113 0.00021412 1.1171 0.00040465 362.5613146661146 49.358 0.18216 49.314 49.215 49.397 -0.04369 12 8 2 0 0 0 0.23996 1 26631 26631 1.5923 0 1 879510 61178 11356 40829 41752 71293 71293 0.12402453822551252 SRGKKKKK 8 Unmodified _SRGKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.3274536132812 2 480.327268 958.639983 1.6001 0.00076855 -0.32732 -0.00015722 1.2727 0.00061133 480.3269558715546 103.04 0.26085 96.862 96.739 97 -6.1757 110 69 2 0 0 0 0.81107 2 69061 69061;69169 0 0 1 7712500 61179 5188 40830 41753 71294;71295 71294 0.15900854424933186 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2527770996094 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 24.626 1 24.651 24.151 25.151 0.024429 0 0 0 0.8622 1 12711 12711 0 0 1 61180 5188 40831 41754 71296 71296 0.19504787896130438 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2521667480469 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 27.321 1 27.35 26.85 27.85 0.028664 0 0 0 0.8622 1 14196 14196 0 0 1 61181 5188 40831 41754 71297 71297 0.19504787896130438 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2529296875 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 43.642 1 43.626 43.126 44.126 -0.015667 0 0 0 0.8622 1 23392 23392 0 0 1 61182 5188 40831 41754 71298 71298 0.19504787896130438 SRGKKKKKK 9 Unmodified _SRGKKKKKK_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2531433105469 3 363.252258 1086.73495 NaN NaN NaN NaN NaN NaN NaN 105.82 1 105.77 105.27 106.27 -0.048737 0 0 0 0.8622 1 58659 58659 0 0 1 61183 5188 40831 41754 71299 71299 0.19504787896130438 SRGLKGFV 8 Unmodified _SRGLKGFV_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2594604492188 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 71.403 1 70.925 70.425 71.425 -0.47735 0 0 0 0.97444 1 39080 39080 2.3027 0 1 + 61184 23848 40832 41755 71300 71300 0.06573525825524484 SRGSCQVGGRR 11 Unmodified _SRGSCQVGGRR_ 0 0 0 ENST00000536255.6_1_17:5322971-5323172:+|nuORF ENST00000536255.6_1_17:5322971-5323172:+|nuORF ENST00000536255.6_1_17:5322971-5323172:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.20068359375 3 388.200117 1161.57852 NaN NaN NaN NaN NaN NaN NaN 16.886 1 14.329 13.829 14.829 -2.557 0 0 0 0.9372 1 8783 8783 2.084 0 1 61185 14980 40833 41756 71301 71301 0.004195546633582126 SRGSREWER 9 Unmodified _SRGSREWER_ 0 0 0 ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A ENSG00000092421|ENST00000343348|SEMA6A ENSG00000092421|ENST00000343348|SEMA6A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1962280273438 3 388.195249 1161.56392 NaN NaN NaN NaN NaN NaN NaN 16.595 1 16.596 16.096 17.096 0.0010548 0 0 0 0.85852 1 8192 8192 0.20686 0.083992 1 61186 1615 40834 41757 71302 71302 -0.010401942131466058 SRGWPLWHE 9 Unmodified _SRGWPLWHE_ 0 0 0 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 ENSG00000130449|ENST00000252744|ZSWIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2901611328125 2 584.28834 1166.56213 NaN NaN NaN NaN NaN NaN NaN 22.348 1 22.348 21.848 22.848 0 0 0 0 0.83049 1 11362 11362 3.9444 0.66309 1 61187 4213 40835 41758 71303 71303 -0.014492032311181902 SRHINPYLY 9 Unmodified _SRHINPYLY_ 0 0 0 REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|33|3|sense REV__L1MD2_dup3350|chr5:176309943-176310863:+|1.2090477969195232|0.265229905058228|2.19|179.0|33|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2012939453125 3 388.204974 1161.59309 0.041666 1.6175E-05 -3.7379 -0.0014511 -3.6962 -0.0014349 388.2034161489811 38.121 0.48336 37.85 37.58 38.064 -0.27133 67 22 4 0 0 0 0.43463 1 19964 19964 7.1017 0 1 19432000 + 61188 29410 40836 41759 71304 71304 0.018759500831492915 SRHPARWF 8 Unmodified _SRHPARWF_ 0 0 0 REV__ENST00000332830.8_2_17:27234686-27239753:-|nuORF REV__ENST00000332830.8_2_17:27234686-27239753:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.7986145019531 3 352.854387 1055.54133 NaN NaN NaN NaN NaN NaN NaN 8.3554 1 5.8734 5.3734 6.3734 -2.482 0 0 0 0.97444 1 4217 4217 0.45834 0.29902 1 + 61189 25617 40837 41760 71305 71305 0.015782511798761334 SRHPPPPL 8 Unmodified _SRHPPPPL_ 0 0 0 REV__ENST00000425358.2_1_7:27135859-27138700:+|nuORF REV__ENST00000425358.2_1_7:27135859-27138700:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7566833496094 2 450.756144 899.497735 NaN NaN NaN NaN NaN NaN NaN 74.194 1 74.194 73.694 74.694 0 0 0 0 0.97444 1 41290 41290 0.79363 0 1 + 61190 26894 40838 41761 71306 71306 0.043966416827515786 SRIKKSKKRKL 11 Unmodified _SRIKKSKKRKL_ 0 0 0 nc|ENSG00000040633|Q9BUL5-3|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23 nc|ENSG00000040633|Q9BUL5-3|PHF23 nc|ENSG00000040633|Q9BUL5-3|PHF23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.85205078125 2 686.46717 1370.91979 NaN NaN NaN NaN NaN NaN NaN 82.661 1 82.723 82.223 83.223 0.062004 0 0 0 0.9435 1 45730 45730 0 0 1 61191 652 40839 41762 71307 71307 0.24916350975877322 SRISSSSF 8 Unmodified _SRISSSSF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7192993164062 2 435.719424 869.424296 -0.28574 -0.0001245 -0.81628 -0.00035567 -1.102 -0.00048017 435.71911316892965 25.11 0.23685 25.11 25.003 25.239 0 30 14 4 0 0 0 0.42686 1 12822 12822 41.84 0 1 1965200 + 61192 165 40840 41763 71308 71308 -0.015639515503721668 SRKRGLRHR 9 Unmodified _SRKRGLRHR_ 0 0 0 REV__ENSG00000135392|ENST00000678005|DNAJC14 REV__ENSG00000135392|ENST00000678005|DNAJC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.2425537109375 3 389.242756 1164.70644 0.20303 7.9028E-05 -1.3974 -0.00054393 -1.1944 -0.0004649 389.24218059166407 61.205 0.41317 61.205 60.953 61.366 0 25 17 2 0 0 0 0.6149 1 34145 34145 0.20686 0.066965 1 372280 + 61193 20061 40841 41764 71309 71309 0.13067483039549188 SRKRGLRHR 9 Unmodified _SRKRGLRHR_ 0 0 0 REV__ENSG00000135392|ENST00000678005|DNAJC14 REV__ENSG00000135392|ENST00000678005|DNAJC14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.242756 1164.70644 0.20303 7.9028E-05 -1.3974 -0.00054393 -1.1944 -0.0004649 389.24218059166407 61.205 0.41317 61.205 60.953 61.366 0 0.050232 0.00032972 NaN 0.20686 25 17 2 NaN NaN NaN NaN 0 NaN NaN 0 372280 + 61194 20061 40841 41764 0.13067483039549188 SRKRRYVRRKQ 11 Unmodified _SRKRRYVRRKQ_ 0 0 0 REV__ENSG00000119403|ENST00000373896|PHF19 REV__ENSG00000119403|ENST00000373896|PHF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.6493835449219 3 511.650075 1531.92839 -0.30191 -0.00015447 -0.042878 -2.1939E-05 -0.34479 -0.00017641 511.6498453296906 101.55 0.14397 101.51 101.44 101.58 -0.04216 9 4 3 0 0 0 0.7453 1 56436 56436 0 0 1 27190000 + 61195 19190 40842 41765 71310 71310 0.1837071766506142 SRKSFVFEL 9 Unmodified _SRKSFVFEL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8096923828125 2 556.808574 1111.60259 1.047 0.00058296 0.93191 0.0005189 1.9789 0.0011019 556.8087418261981 57.616 0.29609 57.549 57.418 57.714 -0.066036 32 14 4 0 0 0 0.40615 1 31382 31382 12.241 2.1667 1 1790400 61196 490 40843 41766 71311 71311 0.051257183686630015 SRKSFVFEL 9 Unmodified _SRKSFVFEL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.808574 1111.60259 1.047 0.00058296 0.93191 0.0005189 1.9789 0.0011019 556.8087418261981 57.616 0.29609 57.549 57.418 57.714 -0.066036 0 0 NaN 12.241 32 14 4 NaN NaN NaN NaN 0 NaN NaN 0 1790400 61197 490 40843 41766 0.051257183686630015 SRKSHLTCHR 10 Unmodified _SRKSHLTCHR_ 0 0 0 ZNF845|p.Y677H|1|0.18|ENSG00000213799|chr19:53352704-53352704|T/C|missense_variant ZNF845|p.Y677H|1|0.18|ENSG00000213799|chr19:53352704-53352704|T/C|missense_variant ZNF845|p.Y677H|1|0.18|ENSG00000213799|chr19:53352704-53352704|T/C|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3060913085938 2 612.822555 1223.63056 1.1124 0.0006817 3.5325 0.0021648 4.6448 0.0028465 613.3258085539659 47.295 0.083385 47.256 47.197 47.28 -0.038643 5 3 2 0 0 0 0.23745 1 25479 25479 5.7319 1.7875 1 711230 61198 30214 40844 41767 71312 71312 0.027687180770954 SRKTVKRIR 9 Unmodified _SRKTVKRIR_ 0 0 0 nc|ENSG00000165240|Q04656-4|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A nc|ENSG00000165240|Q04656-4|ATP7A nc|ENSG00000165240|Q04656-4|ATP7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3760986328125 2 572.375281 1142.73601 -0.63795 -0.00036515 1.2404 0.00071 0.60249 0.00034485 572.3763308428914 103.78 0.1084 103.73 103.67 103.78 -0.048737 10 4 3 0 0 0 0.6149 1 57639 57639 0.45834 0 1 2724100 61199 7313 40845 41768 71313 71313 0.17035002265015464 SRKVWFPW 8 Unmodified _SRKVWFPW_ 0 0 0 ENST00000353383.5_2_17:17584885-17696414:+|nuORF ENST00000353383.5_2_17:17584885-17696414:+|nuORF ENST00000353383.5_2_17:17584885-17696414:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7984008789062 2 553.300719 1104.58688 0.5514 0.00030509 -2.7771 -0.0015366 -2.2257 -0.0012315 553.7993040314814 95.824 0.30917 95.456 95.287 95.596 -0.36815 38 18 3 0 0 0 0.80624 1 52390 52390 2.8892 0.58649 1 580930 61200 12053 40846 41769 71314 71314 0.0387747664226481 SRLEEQYEL 9 Unmodified _SRLEEQYEL_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5270385742188 3 389.527782 1165.56152 -0.68199 -0.00026565 0.44245 0.00017235 -0.23954 -9.3308E-05 389.5278023857066 30.596 0.28702 30.596 30.463 30.75 0 24 13 3 0 0 0 0.51218 1 15904 15904 4.1895 0 1 1602300 + 61201 20108 40847 41770 71315 71315 -0.014640874614542554 SRLNRRLILGR 11 Unmodified _SRLNRRLILGR_ 0 0 0 REV__ENST00000231572.7_1_5:167924327-167927656:+|nuORF REV__ENST00000231572.7_1_5:167924327-167927656:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.432373046875 2 677.431119 1352.84768 NaN NaN NaN NaN NaN NaN NaN 86.955 1 86.452 85.952 86.952 -0.50318 0 0 0 0.94307 1 47572 47572 0.30703 0 1 + 61202 24817 40848 41771 71316 71316 0.18537436622159476 SRLRRKKFLRP 11 Unmodified _SRLRRKKFLRP_ 0 0 0 REV__ENSG00000134259|ENST00000369512|NGF REV__ENSG00000134259|ENST00000369512|NGF MULTI-MSMS AL20221201_MKP_PDAC_01 4 728.9713134765625 2 728.970411 1455.92627 1.4291 0.0010417 0.14587 0.00010633 1.5749 0.0011481 728.9703643551327 104.24 0.092926 98.063 98.014 98.107 -6.1757 10 4 3 0 0 0 0.7453 1 69830 69830 0 0 1 10658000 + 61203 19971 40849 41772 71317 71317 0.21654288927243215 SRLTREVWQRH 11 Unmodified _SRLTREVWQRH_ 0 0 0 REV__ENSG00000130023|ENST00000366773|ERMARD REV__ENSG00000130023|ENST00000366773|ERMARD MSMS AL20221201_MKP_PDAC_01 4 489.9339294433594 3 489.935769 1466.78548 NaN NaN NaN NaN NaN NaN NaN 23.014 1 20.236 19.736 20.736 -2.7784 0 0 0 0.94196 1 12425 12425 1.1098 0.6038 1 + 61204 19691 40850 41773 71318 71318 0.07075665483148441 SRLVAVQQIEF 11 Unmodified _SRLVAVQQIEF_ 0 0 0 ENST00000534213.5_1_11:18344284-18347567:+|nuORF ENST00000534213.5_1_11:18344284-18347567:+|nuORF ENST00000534213.5_1_11:18344284-18347567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3594360351562 2 645.364244 1288.71394 3.5189 0.002271 -3.6957 -0.0023851 -0.17684 -0.00011413 645.361972082633 97.804 0.88768 97.786 97.604 98.491 -0.018188 101 32 5 0 0 0 0.48615 1 54308 54308 17.113 2.2746 1 18243000 61205 14948 40851 41774 71319 71319 0.08112733005918926 SRMAAAGS 8 Unmodified _SRMAAAGS_ 0 0 0 REV__ENST00000464949.5_1_2:98262582-98263026:+|nuORF REV__ENST00000464949.5_1_2:98262582-98263026:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.6824951171875 2 375.681788 749.349022 1.0704 0.00040211 0.96219 0.00036148 2.0325 0.00076359 375.68210285604533 44.252 0.50193 39.4 39.16 39.662 -4.852 61 35 2 0 0 0 0.79783 1 27091 27091 7.9102 0 1 42307000 + 61206 20117 40852 41775 71320 71320 -0.035678322824537645 SRMKMRFC 8 Unmodified _SRMKMRFC_ 0 0 0 REV__ENSG00000147145|ENST00000614823|LPAR4 REV__ENSG00000147145|ENST00000614823|LPAR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7565307617188 2 529.756449 1057.49835 NaN NaN NaN NaN NaN NaN NaN 14.914 1 14.883 14.383 15.383 -0.030868 0 0 0 0.97444 1 7290 7290 0 0 1 + 61207 20871 40853 41776 71321 71321 -0.028103462557055536 SRMKRMMQL 9 Unmodified _SRMKRMMQL_ 0 0 0 ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.208984375 3 394.208568 1179.60387 -0.082004 -3.2327E-05 1.2189 0.00048049 1.1369 0.00044817 394.20899141891925 16.108 0.25191 16.113 16.01 16.262 0.0050564 60 22 4 0 0 0 0.5029 1 8040 8040 4.5289 1.2092 1 6571000 61208 12179 40854 41777 71322 71322 0.021255698699178538 SRMKRMMQL 9 Unmodified _SRMKRMMQL_ 0 0 0 ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2080993652344 3 394.208568 1179.60387 -0.076243 -3.0055E-05 -0.097684 -3.8508E-05 -0.17393 -6.8563E-05 394.2082971177783 16.934 0.7546 16.939 16.357 17.112 0.0050564 83 57 3 0 0 0 0.55775 1 8446 8446 2.2828 1.0679 1 1597500 61209 12179 40854 41777 71323 71323 0.021255698699178538 SRMKRMMQL 9 Unmodified _SRMKRMMQL_ 0 0 0 ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF ENST00000361243.6_1_15:86076886-86076943:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2070007324219 3 394.208568 1179.60387 0.79706 0.00031421 0.27181 0.00010715 1.0689 0.00042136 394.20827598973415 17.783 0.79491 15.197 15.084 15.879 -2.5866 122 72 2 0 0 0 0.5029 1 9270 9270 4.5289 1.6856 1 2841100 61210 12179 40854 41777 71324 71324 0.021255698699178538 SRNDALRL 8 Unmodified _SRNDALRL_ 0 0 0 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 ENSG00000006788|ENST00000252172|MYH13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7676696777344 2 472.76724 943.519927 NaN NaN NaN NaN NaN NaN NaN 84.026 1 84.026 83.526 84.526 0 0 0 0 0.97444 1 46590 46590 0.6015 0 1 61211 352 40855 41778 71325 71325 0.045908213605116543 SRNVKVRY 8 Unmodified _SRNVKVRY_ 0 0 0 ENST00000487196.1_1_10:5800911-5803598:+|nuORF ENST00000487196.1_1_10:5800911-5803598:+|nuORF ENST00000487196.1_1_10:5800911-5803598:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.8215026855469 2 511.298707 1020.58286 0.16158 8.2617E-05 1.6608 0.00084914 1.8223 0.00093176 511.29984432914483 65.67 1.1236 59.494 58.956 60.079 -6.1757 95 65 2 0 0 0 8.7369 1 42788 42788 13.906 2.4113 1 128960000 61212 14200 40856 41779 71326 71326 0.07339387148567766 SRPEEAPRWE 10 Unmodified _SRPEEAPRWE_ 0 0 0 REV__ENSG00000130309|ENST00000252599|COLGALT1 REV__ENSG00000130309|ENST00000252599|COLGALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5386657714844 3 419.538793 1255.59455 -0.50599 -0.00021228 0.07745 3.2493E-05 -0.42854 -0.00017979 419.538794313459 25.406 0.43258 25.406 25.221 25.654 0 65 20 4 0 0 0 0.56675 1 13075 13075 8.2864 0 1 11716000 + 61213 19714 40857 41780 71327 71327 -0.023024606187846075 SRPEEAPRWE 10 Unmodified _SRPEEAPRWE_ 0 0 0 REV__ENSG00000130309|ENST00000252599|COLGALT1 REV__ENSG00000130309|ENST00000252599|COLGALT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.8048095703125 2 628.804551 1255.59455 NaN NaN NaN NaN NaN NaN NaN 25.455 1 25.455 24.955 25.955 0 0 0 0 0.98094 1 13051 13051 2.7352 0.89096 1 + 61214 19714 40857 41780 71328 71328 -0.023024606187846075 SRPEEAPRWE 10 Unmodified _SRPEEAPRWE_ 0 0 0 REV__ENSG00000130309|ENST00000252599|COLGALT1 REV__ENSG00000130309|ENST00000252599|COLGALT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.5390625 3 419.538793 1255.59455 0.83775 0.00035147 -0.89591 -0.00037587 -0.058165 -2.4403E-05 419.5381746887164 28.205 0.24012 25.057 24.878 25.119 -3.1482 22 12 2 0 0 0 0.56675 1 15677 15677 8.2864 0 1 5978200 + 61215 19714 40857 41780 71329 71329 -0.023024606187846075 SRPENAIIY 9 Unmodified _SRPENAIIY_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.78271484375 2 531.782556 1061.55056 0.2979 0.00015842 -0.48558 -0.00025822 -0.18768 -9.9805E-05 531.7823474650629 37.355 0.4919 37.355 37.018 37.51 0 71 25 5 0 0 0 0.085319 1 19816 19816 36.506 17.249 1 40155000 61216 7097 40858 41781 71330 71330 0.022245549549097632 SRPENAIIY 9 Unmodified _SRPENAIIY_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 531.782556 1061.55056 -0.1487 -7.9075E-05 1.9261 0.0010243 1.7774 0.0009452 531.7834609093508 37.592 0.14493 37.321 37.23 37.375 -0.27133 0.045524 0.0025261 NaN 36.506 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1271400 61217 7097 40858 41781 0.022245549549097632 SRPGTEPHRR 10 Unmodified _SRPGTEPHRR_ 0 0 0 ENST00000378308.6_2_X:40945184-40982842:+|nuORF ENST00000378308.6_2_X:40945184-40982842:+|nuORF ENST00000378308.6_2_X:40945184-40982842:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 398.2155151367188 3 398.214643 1191.6221 NaN NaN NaN NaN NaN NaN NaN 16.409 1 13.852 13.352 14.352 -2.557 0 0 0 0.95736 1 8498 8498 2.8433 1.6499 1 61218 12543 40859 41782 71331 71331 0.03395487432112532 SRPLLLRH 8 Unmodified _SRPLLLRH_ 0 0 0 ENST00000565396.5_1_16:2052722-2053019:-|nuORF ENST00000565396.5_1_16:2052722-2053019:-|nuORF ENST00000565396.5_1_16:2052722-2053019:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.3119201660156 2 496.311618 990.608683 0.053923 2.6763E-05 -0.1677 -8.3232E-05 -0.11378 -5.6469E-05 496.3115268654815 37.545 0.33706 37.562 37.416 37.753 0.01704 47 16 4 0 0 0 0.80311 1 20009 20009 4.756 0 1 67098000 61219 15404 40860 41783 71332 71332 0.11300281390833788 SRPLPKILLT 10 Unmodified _SRPLPKILLT_ 0 0 0 ENSG00000169439|ENST00000302190|SDC2 ENSG00000169439|ENST00000302190|SDC2 ENSG00000169439|ENST00000302190|SDC2 MSMS AL20221201_MKP_PDAC_01 4 569.376220703125 2 569.371341 1136.72813 NaN NaN NaN NaN NaN NaN NaN 104.37 1 98.189 97.689 98.689 -6.1757 0 0 0 0.97592 1 69898 69898 3.2813 0 1 61220 7875 40861 41784 71333 71333 0.16523430224901858 SRPPLLGF 8 Unmodified _SRPPLLGF_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000009335|ENST00000348165|UBE3C ENSG00000151148|ENST00000342494|UBE3B;ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.761474609375 2 443.760895 885.507237 0.59682 0.00026484 -0.13908 -6.172E-05 0.45773 0.00020312 443.7607848255616 61.858 0.35764 61.825 61.608 61.966 -0.032787 36 17 3 0 0 0 0.40602 1 33728 33728 43.858 18.459 1 10822000 61221 402;6094 40862 41785 71334 71334 0.05990409968296717 SRPPLLGF 8 Unmodified _SRPPLLGF_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENSG00000009335|ENST00000348165|UBE3C ENSG00000151148|ENST00000342494|UBE3B;ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7619323730469 2 443.760895 885.507237 0.89965 0.00039923 -0.65428 -0.00029034 0.24537 0.00010888 443.7607187918261 67.13 0.45169 60.955 60.73 61.181 -6.1757 47 24 3 0 0 0 0.40602 2 43633 43633;43772 43.858 18.459 1 31456000 61222 402;6094 40862 41785 71335;71336 71335 0.05990409968296717 SRPPLVVF 8 Unmodified _SRPPLVVF_ 0 0 0 ENSG00000106609|ENST00000341567|TMEM248;nc|ENSG00000106609|Q9NWD8-2|TMEM248 ENSG00000106609|ENST00000341567|TMEM248 ENSG00000106609|ENST00000341567|TMEM248 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7765197753906 2 457.776545 913.538538 0.53329 0.00024413 -1.2257 -0.00056108 -0.69237 -0.00031695 457.77653010410495 62.682 0.34437 62.661 62.467 62.811 -0.021614 39 17 4 0 0 0 0.56356 1 34224 34224 29.082 13.234 1 7479100 61223 2443 40863 41786 71337 71337 0.07830983002384073 SRPPLVVF 8 Unmodified _SRPPLVVF_ 0 0 0 ENSG00000106609|ENST00000341567|TMEM248;nc|ENSG00000106609|Q9NWD8-2|TMEM248 ENSG00000106609|ENST00000341567|TMEM248 ENSG00000106609|ENST00000341567|TMEM248 MSMS AL20221201_MKP_PDAC_01 4 457.7769470214844 2 457.776545 913.538538 NaN NaN NaN NaN NaN NaN NaN 67.6 1 61.424 60.924 61.924 -6.1757 0 0 0 0.62748 1 44049 44049 32.305 4.1323 1 61224 2443 40863 41786 71338 71338 0.07830983002384073 SRPPPAEGF 9 Unmodified _SRPPPAEGF_ 0 0 0 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 ENSG00000213965|ENST00000397061|NUDT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2433776855469 2 479.243067 956.47158 0.16937 8.117E-05 0.40322 0.00019324 0.5726 0.00027441 479.2430856292668 31.187 0.44657 31.187 30.932 31.379 0 45 21 3 0 0 0 0.18144 1 16183 16183 24.991 0 1 2679700 61225 10469 40864 41787 71339 71339 -0.008396722793804656 SRQEVPLAT 9 Unmodified _SRQEVPLAT_ 0 0 0 ENSG00000163536|ENST00000446050|SERPINI1 ENSG00000163536|ENST00000446050|SERPINI1 ENSG00000163536|ENST00000446050|SERPINI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7742309570312 2 500.774731 999.534909 -0.094588 -4.7367E-05 -0.18902 -9.4657E-05 -0.28361 -0.00014202 500.77428121731856 24.695 0.13653 24.695 24.624 24.76 0 11 8 2 0 0 0 0.52067 1 12643 12643 6.2058 1.8765 1 445620 61226 7015 40865 41788 71340 71340 0.03512268437862076 SRQILPTFS 9 Unmodified _SRQILPTFS_ 0 0 0 REV__ENST00000507640.1_1_5:61778930-61779155:+|nuORF REV__ENST00000507640.1_1_5:61778930-61779155:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.1968994140625 3 350.197708 1047.57129 NaN NaN NaN NaN NaN NaN NaN 20.292 1 17.599 17.099 18.099 -2.693 0 0 0 0.83812 1 10806 10806 2.9952 0 1 + 61227 17766 40866 41789 71341 71341 0.049411453345555856 SRQKAARLQ 9 Unmodified _SRQKAARLQ_ 0 0 0 REV__ENST00000493449.5_1_16:322367-324481:-|nuORF REV__ENST00000493449.5_1_16:322367-324481:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8099975585938 2 529.314889 1056.61522 -0.154 -8.1516E-05 -3.1649 -0.0016753 -3.3189 -0.0017568 529.3129344552623 35.976 0.18943 36.001 35.885 36.075 0.024967 13 8 2 0 0 0 0.18521 1 19050 19050 16.942 9.0321 1 2033800 + 61228 17587 40867 41790 71342 71342 0.08918174551558877 SRQKEIEKYVY 11 Unmodified _SRQKEIEKYVY_ 0 0 0 ENSG00000155890|ENST00000286349|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 ENSG00000155890|ENST00000286349|TRIM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 721.8861694335938 2 721.885541 1441.75653 1.0302 0.00074371 0.15579 0.00011247 1.186 0.00085617 721.8855776174311 40.865 0.39828 36.257 36.034 36.432 -4.6079 59 24 3 0 0 0 0.67477 1 24395 24395 8.1555 0 1 24953000 61229 6414 40868 41791 71343 71343 0.05332083343546401 SRQLEGLWF 9 Unmodified _SRQLEGLWF_ 0 0 0 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MSMS AL20221201_MKP_PDAC_01 4 568.2972412109375 2 568.298373 1134.58219 NaN NaN NaN NaN NaN NaN NaN 80.627 1 74.451 73.951 74.951 -6.1757 0 0 0 0.57317 1 52903 52903 13.508 1.8676 1 + 61230 17355 40869 41792 71344 71344 0.020285477088464177 SRRASPVP 8 Unmodified _SRRASPVP_ 0 0 0 REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2533874511719 2 435.251226 868.487899 1.0628 0.00046258 1.8554 0.00080757 2.9182 0.0012701 435.2522983975869 91.554 0.39832 85.379 85.111 85.509 -6.1757 39 21 2 0 0 0 0.80311 1 60579 60579 4.756 0 1 12294000 + 61231 26393 40870 41793 71345 71345 0.04839453677379879 SRRFQRYHWKR 11 Unmodified _SRRFQRYHWKR_ 0 0 0 ENST00000548895.1_1_12:69678801-69679005:+|nuORF ENST00000548895.1_1_12:69678801-69679005:+|nuORF ENST00000548895.1_1_12:69678801-69679005:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.443115234375 2 810.442549 1618.87055 NaN NaN NaN NaN NaN NaN NaN 102.72 1 102.72 102.22 103.22 0 0 0 0 0.9435 1 56641 56641 0 0 1 61232 15141 40871 41794 71346 71346 0.08586455739623489 SRRGPLLL 8 Unmodified _SRRGPLLL_ 0 0 0 REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2932434082031 2 456.292894 910.571235 0.49075 0.00022393 1.1019 0.00050279 1.5926 0.00072671 456.293522703495 101.6 0.5161 101.6 101.32 101.83 0 35 23 2 0 0 0 0.81107 1 56062 56062 0 0 1 467140 + 61233 26094 40872 41795 71347 71347 0.11237190125245888 SRRGPLLL 8 Unmodified _SRRGPLLL_ 0 0 0 REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF REV__ENST00000371753.5_1_9:138902765-138903128:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2931213378906 2 456.292894 910.571235 0.21574 9.8438E-05 1.0761 0.000491 1.2918 0.00058944 456.29346288929133 101.69 0.63698 101.58 101.3 101.94 -0.11613 48 28 2 0 0 0 0.81107 2 55435 55435;55534 0 0 1 630730 + 61234 26094 40872 41795 71348;71349 71348 0.11237190125245888 SRRHVGGGH 9 Unmodified _SRRHVGGGH_ 0 0 0 ENST00000304858.6_1_5:132387893-132388025:+|nuORF ENST00000304858.6_1_5:132387893-132388025:+|nuORF ENST00000304858.6_1_5:132387893-132388025:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7551879882812 2 481.754998 961.495444 NaN NaN NaN NaN NaN NaN NaN 0.15955 1 0.13749 -0.36251 0.63749 -0.022065 0 0 0 0.8622 1 87 87 0 0 1 61235 11607 40873 41796 71350 71350 0.013156059976722645 SRRLLQIKDRY 11 Unmodified _SRRLLQIKDRY_ 0 0 0 REV__ENSG00000123472|ENST00000574428|ATPAF1 REV__ENSG00000123472|ENST00000574428|ATPAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.7184448242188 4 362.717759 1446.84193 0.8283 0.00030044 1.0882 0.00039472 1.9165 0.00069515 362.71815918818646 14.673 0.1463 12.17 12.101 12.248 -2.5029 73 25 4 0 0 0 0.72131 1 7455 7455 2.2527 1.2392 1 11053000 + 61236 19388 40874 41797 71351 71351 0.1363829331985471 SRRLTPAQRPM 11 Unmodified _SRRLTPAQRPM_ 0 0 0 REV__ENST00000337714.7_1_17:55187439-55189165:+|nuORF REV__ENST00000337714.7_1_17:55187439-55189165:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2474975585938 3 438.247067 1311.71937 0.87369 0.00038289 -0.098035 -4.2964E-05 0.77565 0.00033993 438.2471949564172 18.56 0.34195 15.939 15.755 16.097 -2.6215 113 36 4 0 0 0 0.72131 1 9713 9713 2.2527 0.16672 1 15817000 + 61237 25667 40875 41798 71352 71352 0.0759813331674195 SRRMLTYIL 9 Unmodified _SRRMLTYIL_ 0 0 0 ENST00000393992.5_2_16:67243955-67260646:-|nuORF ENST00000393992.5_2_16:67243955-67260646:-|nuORF ENST00000393992.5_2_16:67243955-67260646:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.8914184570312 3 384.890109 1151.6485 NaN NaN NaN NaN NaN NaN NaN 21.366 1 18.631 18.131 19.131 -2.7348 0 0 0 0.7818 1 11435 11435 4.1895 0 1 61238 12723 40876 41799 71353 71353 0.07874040279239125 SRRPAGVG 8 Unmodified _SRRPAGVG_ 0 0 0 REV__nc|ENSG00000146112|Q6NYC8-4|PPP1R18 REV__nc|ENSG00000146112|Q6NYC8-4|PPP1R18 MSMS AL20221201_MKP_PDAC_01 4 400.2306213378906 2 400.230294 798.446034 NaN NaN NaN NaN NaN NaN NaN 21.072 1 18.379 17.879 18.879 -2.693 0 0 0 0.97444 1 11254 11254 4.756 0 1 + 61239 20811 40877 41800 71354 71354 0.03874897988862358 SRRPNKRECLF 11 Unmodified _SRRPNKRECLF_ 0 0 0 ENST00000348367.8_1_10:113913384-113914391:-|nuORF ENST00000348367.8_1_10:113913384-113914391:-|nuORF ENST00000348367.8_1_10:113913384-113914391:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 703.3757934570312 2 703.377694 1404.74084 NaN NaN NaN NaN NaN NaN NaN 102.74 1 96.564 96.064 97.064 -6.1757 0 0 0 0.93933 1 68930 68930 2.9952 1.6657 1 61240 12038 40878 41801 71355 71355 0.05465518345476994 SRRRAASKRL 10 Unmodified _SRRRAASKRL_ 0 0 0 ENST00000584346.1_1_18:10724726-10725338:+|nuORF ENST00000584346.1_1_18:10724726-10725338:+|nuORF ENST00000584346.1_1_18:10724726-10725338:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.9162902832031 3 400.91805 1199.73232 NaN NaN NaN NaN NaN NaN NaN 28.965 1 25.664 25.164 26.164 -3.3016 0 0 0 0.97556 1 16202 16202 3.3196 0 1 61241 15593 40879 41802 71356 71356 0.14044332491175737 SRRRRHKK 8 Unmodified _SRRRRHKK_ 0 0 0 ENSG00000166343|ENST00000299432|MSS51 ENSG00000166343|ENST00000299432|MSS51 ENSG00000166343|ENST00000299432|MSS51 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2385864257812 3 375.239235 1122.69588 -0.040259 -1.5107E-05 -1.4584 -0.00054725 -1.4987 -0.00056236 375.23875509335346 33.104 0.23317 33.133 32.998 33.232 0.029747 23 9 3 0 0 0 0.8104 1 17434 17434 0.40072 0 1 2302300 61242 7475 40880 41803 71357 71357 0.13943500385107654 SRRRRRRHKRR 11 Unmodified _SRRRRRRHKRR_ 0 0 0 REV__nc|ENSG00000176444|P49760-3|CLK2 REV__nc|ENSG00000176444|P49760-3|CLK2 MSMS AL20221201_MKP_PDAC_01 4 810.5105590820312 2 810.509955 1619.00536 NaN NaN NaN NaN NaN NaN NaN 100.25 1 94.071 93.571 94.571 -6.1757 0 0 0 0.9435 1 66987 66987 0 0 1 + 61243 22931 40881 41804 71358 71358 0.22061373724727673 SRRRVRPAC 9 Unmodified _SRRRVRPAC_ 0 0 0 ENST00000482692.1_1_7:28449401-28450235:+|nuORF ENST00000482692.1_1_7:28449401-28450235:+|nuORF ENST00000482692.1_1_7:28449401-28450235:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.8128051757812 2 550.814533 1099.61451 NaN NaN NaN NaN NaN NaN NaN 23.452 1 23.473 22.973 23.973 0.021185 0 0 0 0.85737 1 12080 12080 0.6015 0 1 61244 14109 40882 41805 71359 71359 0.06869056630853265 SRRRWWLVRFR 11 Unmodified _SRRRWWLVRFR_ 0 0 0 REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF REV__ENST00000307340.7_1_1:215963551-215972328:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 809.4713134765625 2 809.471109 1616.92767 NaN NaN NaN NaN NaN NaN NaN 82.232 1 82.294 81.794 82.794 0.062004 0 0 0 0.9435 1 45487 45487 0 0 1 + 61245 25388 40883 41806 71360 71360 0.14387923015988235 SRSDPNLY 8 Unmodified _SRSDPNLY_ 0 0 0 REV__nc|ENSG00000162929|Q6NSI8-3|SANBR REV__nc|ENSG00000162929|Q6NSI8-3|SANBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2296752929688 2 476.230156 950.445759 -0.14942 -7.1158E-05 -0.63774 -0.00030371 -0.78716 -0.00037487 476.2299100925806 23.557 0.46477 23.557 23.347 23.811 0 33 23 2 0 0 0 0.80232 1 12076 12076 5.2307 0 1 895080 + 61246 21708 40884 41807 71361 71361 -0.03144566521677916 SRSEMLLSHL 10 Unmodified _SRSEMLLSHL_ 0 0 0 REV__ENST00000394129.6_1_15:99785679-99791400:-|nuORF REV__ENST00000394129.6_1_15:99785679-99791400:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.8079833984375 2 586.808248 1171.60194 -0.010346 -6.0712E-06 -0.73397 -0.0004307 -0.74432 -0.00043677 586.8077841859957 61.612 0.29819 61.125 60.944 61.243 -0.48764 33 13 3 0 0 0 0.50362 1 33554 33554 16.149 1.7437 1 3094000 + 61247 26435 40885 41808 71362 71362 0.02300555657325276 SRSITECSSF 10 Unmodified _SRSITECSSF_ 0 0 0 ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-4|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF ENSG00000165124|ENST00000374469|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 MSMS AL20221201_MKP_PDAC_01 4 558.7520751953125 2 558.753138 1115.49172 NaN NaN NaN NaN NaN NaN NaN 84.626 1 78.45 77.95 78.95 -6.1757 0 0 0 0.81856 1 55688 55688 11.495 0.67078 1 61248 7297 40886 41809 71363 71363 -0.061402894017419385 SRSMRLLLLL 10 Unmodified _SRSMRLLLLL_ 0 0 0 chr1:119794685-119799725|98|31.74|0.25|7.0|-|ENST00000530654|REG4,REG4;nc|ENSG00000134193|Q9BYZ8-2|REG4;ENSG00000134193|ENST00000256585|REG4;chr1:119809202-119811409|100|32.38|0.24|7.09|-|ENST00000354219|REG4,REG4 chr1:119794685-119799725|98|31.74|0.25|7.0|-|ENST00000530654|REG4,REG4 chr1:119794685-119799725|98|31.74|0.25|7.0|-|ENST00000530654|REG4,REG4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.376220703125 2 601.376101 1200.73765 NaN NaN NaN NaN NaN NaN NaN 15.414 1 15.4 14.9 15.9 -0.014067 0 0 0 1.0061 1 7563 7563 0 0 1 61249 62 40887 41810 71364 71364 0.14530875238801855 SRSSGWGV 8 Unmodified _SRSSGWGV_ 0 0 0 ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2068176269531 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 18.335 1 18.335 17.835 18.835 0 0 0 0 0.97444 1 9107 9107 2.3027 0.24298 1 61250 14386 40888 41811 71365 71365 -0.02540801001998716 SRSSGWGV 8 Unmodified _SRSSGWGV_ 0 0 0 ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2074890136719 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 18.931 1 18.931 18.431 19.431 0 0 0 0 0.97444 1 9442 9442 2.3027 0.24298 1 61251 14386 40888 41811 71366 71366 -0.02540801001998716 SRSSGWGV 8 Unmodified _SRSSGWGV_ 0 0 0 ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2074279785156 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 19.258 1 19.258 18.758 19.758 0 0 0 0 0.97444 1 9621 9621 2.3027 0.24298 1 61252 14386 40888 41811 71367 71367 -0.02540801001998716 SRSSGWGV 8 Unmodified _SRSSGWGV_ 0 0 0 ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2071228027344 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 15.167 1 15.153 14.653 15.653 -0.014067 0 0 0 0.97444 1 7429 7429 2.3027 0.24298 1 61253 14386 40888 41811 71368 71368 -0.02540801001998716 SRSSGWGV 8 Unmodified _SRSSGWGV_ 0 0 0 ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF ENST00000496793.1_1_9:140513165-140513324:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2073059082031 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 19.341 1 19.364 18.864 19.864 0.023106 0 0 0 0.97444 1 9746 9746 2.3027 0.24298 1 61254 14386 40888 41811 71369 71369 -0.02540801001998716 SRTALLGTSLA 11 Unmodified _SRTALLGTSLA_ 0 0 0 ENST00000513970.5_2_5:137673767-137673917:-|nuORF ENST00000513970.5_2_5:137673767-137673917:-|nuORF ENST00000513970.5_2_5:137673767-137673917:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.317626953125 2 545.316763 1088.61897 1.8693 0.0010193 0.38624 0.00021062 2.2555 0.00123 545.3168503894176 93.671 1.0622 93.694 93.003 94.066 0.022987 107 41 4 0 0 0 0.7453 1 52057 52057 0 0 1 14614000 61255 14645 40889 41812 71370 71370 0.0782079953480661 SRTERDWY 8 Unmodified _SRTERDWY_ 0 0 0 REV__ENST00000484194.1_1_6:30457308-30457777:+|nuORF REV__ENST00000484194.1_1_6:30457308-30457777:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7595825195312 2 556.759612 1111.50467 0.62905 0.00035023 0.32043 0.0001784 0.94948 0.00052863 556.7596705718926 30.833 0.24504 30.73 30.594 30.839 -0.10269 20 9 3 0 0 0 0.79783 1 16004 16004 7.9102 0.62092 1 3173700 + 61256 24185 40890 41813 71371 71371 -0.04662090227338922 SRTPSWAP 8 Unmodified _SRTPSWAP_ 0 0 0 REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF REV__ENST00000599536.1_2_19:49967120-49989319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2302551269531 2 451.229959 900.445365 0.76255 0.00034408 1.2817 0.00057835 2.0443 0.00092244 451.2304647078547 60.549 0.53863 60.549 60.368 60.907 0 55 23 3 0 0 0 0.80676 1 33738 33738 2.5775 0 1 3368400 + 61257 29242 40891 41814 71372 71372 -0.008839414508656773 SRTTSPMS 8 Unmodified _SRTTSPMS_ 0 0 0 REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF REV__ENST00000407450.1_1_6:118774123-118774444:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.7057800292969 2 433.70546 865.396366 NaN NaN NaN NaN NaN NaN NaN 40.088 1 35.559 35.059 36.059 -4.5294 0 0 0 0.9192 1 23897 23897 16.942 3.4344 1 + 61258 26669 40892 41815 71373 71373 -0.041715978021102273 SRVGSSNF 8 Unmodified _SRVGSSNF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2116394042969 2 427.211766 852.40898 -0.42633 -0.00018213 0.13234 5.6539E-05 -0.29398 -0.00012559 427.21176569399506 19.789 0.31673 19.789 19.558 19.874 0 61 44 2 0 0 0 0.56356 2 9909 9806;9909 29.082 16.55 1 875600 + 61259 165 40893 41816 71374;71375 71375 -0.023128183475705555 SRVKQLLLG 9 Unmodified _SRVKQLLLG_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3265991210938 2 507.326934 1012.63931 -0.016322 -8.2804E-06 0.12814 6.5009E-05 0.11182 5.6728E-05 507.32695863935135 102.73 0.36462 102.62 102.49 102.85 -0.10458 27 16 2 0 0 0 0.62242 1 56042 56042 0 0 1 496690 + 61260 23692 40894 41817 71376 71376 0.13350014985257985 SRVKQLLLG 9 Unmodified _SRVKQLLLG_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3280334472656 2 507.326934 1012.63931 -0.42904 -0.00021766 0.55614 0.00028215 0.1271 6.4483E-05 507.32718003477 102.72 0.41306 102.68 102.52 102.93 -0.04792 43 14 4 0 0 0 0.62242 2 57031 57031;57145 0 0 1 2514100 + 61261 23692 40894 41817 71377;71378 71377 0.13350014985257985 SRVKQLLLG 9 Unmodified _SRVKQLLLG_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 507.326934 1012.63931 -0.016322 -8.2804E-06 0.12814 6.5009E-05 0.11182 5.6728E-05 507.32695863935135 102.73 0.36462 102.62 102.49 102.85 -0.10458 -0.026585 -0.00012976 NaN 0 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 496690 + 61262 23692 40894 41817 0.13350014985257985 SRVKQLLLG 9 Unmodified _SRVKQLLLG_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.326934 1012.63931 -0.42904 -0.00021766 0.55614 0.00028215 0.1271 6.4483E-05 507.32718003477 102.72 0.41306 102.68 102.52 102.93 -0.04792 0.026585 0.00030452 NaN 0 43 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2514100 + 61263 23692 40894 41817 0.13350014985257985 SRVNGAWQY 9 Unmodified _SRVNGAWQY_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7647094726562 2 540.764697 1079.51484 -0.44711 -0.00024178 -0.14721 -7.9603E-05 -0.59432 -0.00032139 540.764527321638 34.681 0.19311 34.49 34.371 34.564 -0.19131 25 8 4 0 0 0 0.033587 1 18110 18110 53.404 35.269 1 17082000 61264 12988;15781 40895 41818 71379 71379 -0.021734825020985227 SRVNGAWQY 9 Unmodified _SRVNGAWQY_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.765625 2 540.764697 1079.51484 0.1102 5.959E-05 -0.22587 -0.00012214 -0.11568 -6.2554E-05 540.7647567316852 34.462 0.23676 34.49 34.347 34.584 0.027401 24 10 3 0 0 0 0.062454 1 18149 18149 41.956 28.448 1 3031800 61265 12988;15781 40895 41818 71380 71380 -0.021734825020985227 SRVNGAWQY 9 Unmodified _SRVNGAWQY_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.765380859375 2 540.764697 1079.51484 0.37028 0.00020023 1.346 0.00072788 1.7163 0.00092812 540.7651926507017 38.473 0.44936 34.104 33.855 34.305 -4.3689 67 28 4 0 0 0 0.025842 2 22588 22588;22712 57.722 29.235 1 75772000 61266 12988;15781 40895 41818 71381;71382 71381 -0.021734825020985227 SRVSENQSAQ 10 Unmodified _SRVSENQSAQ_ 0 0 0 ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C ENSG00000129250|ENST00000320785|KIF1C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.88623046875 3 369.179265 1104.51596 1.4076 0.00051966 1.9967 0.00073715 3.4043 0.0012568 369.1798871097263 56.513 0.15236 50.536 50.446 50.599 -5.9769 11 8 2 0 0 0 0.23489 1 36030 36030 1.3296 0 1 7880900 61267 4125 40896 41819 71383 71383 -0.032113129238496185 SRVVVLLV 8 Unmodified _SRVVVLLV_ 0 0 0 nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1 nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1 nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.5933227539062 1 884.592764 883.585488 1.0609 0.0009385 0.24111 0.00021328 1.302 0.0011518 884.5926873617935 105.28 0.25874 99.102 98.947 99.206 -6.1757 168 63 4 0 0 0 0.81007 1 70419 70419 0.6015 0 1 877460000 61268 5846 40897 41820 71384 71384 0.13903842553520462 SRWPCTSP 8 Unmodified _SRWPCTSP_ 0 0 0 nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1;nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;nc|ENSG00000168502|Q9Y4B5-4|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2163391113281 2 467.215995 932.417436 0.1553 7.2557E-05 0.28347 0.00013244 0.43877 0.000205 467.21596994929706 56.309 0.35655 56.309 56.138 56.495 0 31 16 3 0 0 0 0.79887 1 31291 31291 7.2892 0 1 5045700 61269 7773 40898 41821 71385 71385 -0.05147587702595047 SRWRQAGA 8 Unmodified _SRWRQAGA_ 0 0 0 REV__ENSG00000162512|ENST00000339394|SDC3 REV__ENSG00000162512|ENST00000339394|SDC3 MSMS AL20221201_MKP_PDAC_01 4 466.2510681152344 2 466.246475 930.478397 NaN NaN NaN NaN NaN NaN NaN 102.28 1 96.1 95.6 96.6 -6.1757 0 0 0 0.97444 1 68638 68638 4.756 0 1 + 61270 21654 40899 41822 71386 71386 0.010376853918501183 SRYAVMTT 8 Unmodified _SRYAVMTT_ 0 0 0 nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH nc|ENSG00000103599|Q86VS3-4|IQCH nc|ENSG00000103599|Q86VS3-4|IQCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.730224609375 2 464.731477 927.448402 0.18456 8.5772E-05 -1.7337 -0.00080569 -1.5491 -0.00071992 464.7297469583649 22.982 0.42814 22.982 22.754 23.182 0 59 23 3 0 0 0 0.76266 1 11743 11743 11.64 0 1 2112500 61271 2155 40900 41823 71387 71387 -0.0182243438837304 SRYDRAITVF 10 Unmodified _SRYDRAITVF_ 0 0 0 nc|ENSG00000154611|Q8TAA3-2|PSMA8;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 nc|ENSG00000154611|Q8TAA3-2|PSMA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8880615234375 3 409.887533 1226.64077 1.0449 0.00042831 -0.24199 -9.9189E-05 0.80295 0.00032912 409.88768748521034 19.108 0.17663 16.475 16.37 16.546 -2.6333 21 11 2 0 0 0 0.65282 1 10085 10085 4.7159 1.1289 1 2035600 61272 6336 40901 41824 71388 71388 0.03651604283300003 SRYPTPYG 8 Unmodified _SRYPTPYG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.4525146484375 1 940.452308 939.445031 -0.32213 -0.00030295 -0.18854 -0.00017732 -0.51068 -0.00048027 940.4518506758675 40.542 0.18851 40.542 40.451 40.639 0 15 9 2 0 0 0 0.52622 1 21770 21770 32.305 14.171 1 2576800 61273 1325 40902 41825 71389 71389 -0.027113611707136442 SSADKPSNIL 10 Unmodified _SSADKPSNIL_ 0 0 0 REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2 REV__nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2739868164062 2 516.272021 1030.52949 0.48431 0.00025004 1.7222 0.0008891 2.2065 0.0011391 516.2740045612708 67.632 0.61028 67.15 66.78 67.391 -0.48218 37 26 2 0 0 0 0.60623 1 37040 37040 10.824 1.4408 1 635470 + 61274 20715 40903 41826 71390 71390 0.01544544855391905 SSAECWYDY 9 Unmodified _SSAECWYDY_ 0 0 0 REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3 REV__nc|ENSG00000198945|Q96JM7-2|L3MBTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.1395263671875 3 375.139418 1122.39643 -0.4681 -0.0001756 2.3132 0.00086776 1.8451 0.00069215 375.1403155211283 55.272 0.28844 55.272 55.149 55.437 0 16 12 2 0 0 0 0.60485 1 30694 30694 1.0715 0 1 2957200 + 61275 24104 40904 41827 71391 71391 -0.15987642592790507 SSAGPGLLK 9 Unmodified _SSAGPGLLK_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.24267578125 2 415.242535 828.470518 NaN NaN NaN NaN NaN NaN NaN 28.943 1 28.943 28.443 29.443 0 0 0 0 0.16996 1 14973 14973 34.402 7.5181 1 + 61276 199 40905 41828 71392 71392 0.04942113351705757 SSALPDPNML 10 Unmodified _SSALPDPNML_ 0 0 0 ENSG00000198026|ENST00000322927|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 ENSG00000198026|ENST00000322927|ZNF335 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2797241210938 2 522.755149 1043.49575 0.64283 0.00033604 -3.1795 -0.0016621 -2.5366 -0.001326 522.7540539810497 52.425 0.15893 52.367 52.229 52.388 -0.058918 10 7 2 0 0 0 0.23634 1 28341 28341 6.7232 0 1 1076000 61277 10038 40906 41829 71393 71393 -0.02426199908018134 SSALPLLRA 9 Unmodified _SSALPLLRA_ 0 0 0 REV__nc|nan|Q8N9P6|C9orf163 REV__nc|nan|Q8N9P6|C9orf163 MSMS AL20221201_MKP_PDAC_01 4 464.2850952148438 2 464.284734 926.554916 NaN NaN NaN NaN NaN NaN NaN 110 1 103.82 103.32 104.32 -6.1836 0 0 0 0.82396 1 73436 73436 4.756 2.1785 1 + 61278 30051 40907 41830 71394 71394 0.08870064168456793 SSASGREHQF 10 Unmodified _SSASGREHQF_ 0 0 0 REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF REV__ENST00000491028.1_1_13:113745283-113749039:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1710205078125 3 369.172221 1104.49483 1.1798 0.00043556 -1.0438 -0.00038535 0.13602 5.0216E-05 369.1717415606158 33.034 0.42362 29.178 28.989 29.413 -3.8562 49 26 2 0 0 0 0.69064 1 18988 18988 1.9064 0.45126 1 43023000 + 61279 27886 40908 41831 71395 71395 -0.053232782327313544 SSASLAVEY 9 Unmodified _SSASLAVEY_ 0 0 0 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 ENSG00000052802|ENST00000261507|MSMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 926.447509765625 1 926.446553 925.439277 -0.092483 -8.5681E-05 0.54825 0.00050793 0.45577 0.00042225 926.4471623078584 45.095 0.24974 45.095 44.959 45.209 0 20 12 2 0 0 0 0.031062 1 24547 24547 54.774 3.9185 1 5990200 61280 741 40909 41832 71396 71396 -0.026425044730444824 SSATYGGS 8 Unmodified _SSATYGGS_ 0 0 0 ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR ENSG00000164327|ENST00000357387|RICTOR ENSG00000164327|ENST00000357387|RICTOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1583862304688 2 365.156126 728.297698 NaN NaN NaN NaN NaN NaN NaN 57.212 1 57.212 56.712 57.712 0 0 0 0 0.97444 1 31834 31834 2.5775 0 1 61281 7181 40910 41833 71397 71397 -0.07731877775506746 SSCADWWR 8 Unmodified _SSCADWWR_ 0 0 0 ENST00000313552.10_1_2:242668082-242668430:+|nuORF ENST00000313552.10_1_2:242668082-242668430:+|nuORF ENST00000313552.10_1_2:242668082-242668430:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.1793518066406 2 505.711076 1009.4076 0.97242 0.00049176 -0.60771 -0.00030733 0.36471 0.00018444 505.71083370665696 54.736 0.30248 54.736 54.528 54.83 0 21 12 2 0 0 0 8.7369 1 30440 30440 5.2307 0 1 4338500 61282 11717 40911 41834 71398 71398 -0.09672775707986148 SSCCGYGH 8 Unmodified _SSCCGYGH_ 0 0 0 ENSG00000186930|ENST00000334897|KRTAP6-2 ENSG00000186930|ENST00000334897|KRTAP6-2 ENSG00000186930|ENST00000334897|KRTAP6-2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8379211425781 2 407.136356 812.258158 NaN NaN NaN NaN NaN NaN NaN 78.25 1 78.25 77.75 78.75 0 0 0 0 0.97444 1 43489 43489 0.79363 0.79363 1 61283 9524 40912 41835 71399 71399 -0.1554804432223591 SSCRCHQDGSG 11 Unmodified _SSCRCHQDGSG_ 0 0 0 REV__ENSG00000198853|ENST00000361226|RUSC2 REV__ENSG00000198853|ENST00000361226|RUSC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7139892578125 2 568.714021 1135.41349 NaN NaN NaN NaN NaN NaN NaN 5.7053 1 5.7053 5.2053 6.2053 0 0 0 0 0.9435 1 2741 2741 0 0 1 + 61284 24080 40913 41836 71400 71400 -0.1488004525863289 SSCSGCCG 8 Unmodified _SSCSGCCG_ 0 0 0 REV__ENST00000592432.5_1_17:74538692-74539195:+|nuORF REV__ENST00000592432.5_1_17:74538692-74539195:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.1874389648438 2 352.095842 702.177131 NaN NaN NaN NaN NaN NaN NaN 20.248 1 20.259 19.759 20.759 0.010553 0 0 0 0.97444 1 10322 10322 0 0 1 + 61285 27398 40914 41837 71401 71401 -0.18587068356634973 SSCTESSQI 9 Unmodified _SSCTESSQI_ 0 0 0 REV__ENSG00000165379|ENST00000298119|LRFN5 REV__ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.1991882324219 2 471.197664 940.380776 0.51553 0.00024292 2.3621 0.001113 2.8776 0.0013559 471.198814746287 45.496 0.33389 40.541 40.425 40.759 -4.9549 31 22 2 0 0 0 0.34999 1 27912 27912 14.838 0 1 11822000 + 61286 22007 40915 41838 71402 71402 -0.09179929109814111 SSDEDDDDDEA 11 Unmodified _SSDEDDDDDEA_ 0 0 0 ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000173575|O14647-3|CHD2 ENSG00000173575|ENST00000394196|CHD2 ENSG00000173575|ENST00000394196|CHD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.686767578125 2 606.686566 1211.35858 NaN NaN NaN NaN NaN NaN NaN 15.381 1 15.367 14.867 15.867 -0.014067 0 0 0 0.9435 1 7544 7544 0 0 1 61287 8341 40916 41839 71403 71403 -0.23864526835200195 SSDLPGGEF 9 Unmodified _SSDLPGGEF_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.3988647460938 1 908.399603 907.392327 -0.10219 -9.2827E-05 -0.29747 -0.00027022 -0.39966 -0.00036305 908.399507047724 48.202 0.32325 48.202 48.071 48.394 0 34 15 3 0 0 0 0.0041763 2 26395 26395;26505 120.45 65.677 1 8430000 61288 2782 40917 41840 71404;71405 71404 -0.06507364024173512 SSDLPGGEF 9 Unmodified _SSDLPGGEF_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 nc|ENSG00000111335|P29728|OAS2 nc|ENSG00000111335|P29728|OAS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 908.3995361328125 1 908.399603 907.392327 -0.035911 -3.2622E-05 1.2155 0.0011042 1.1796 0.0010715 908.4001393312806 56.022 0.25766 50.101 49.937 50.195 -5.9211 19 14 2 0 0 0 0.0018186 1 35650 35650 133.7 69.466 1 19993000 61289 2782 40917 41840 71406 71406 -0.06507364024173512 SSDSEKEDDLE 11 Unmodified _SSDSEKEDDLE_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR;ENST00000517824.5_1_8:48203675-48352885:+|nuORF;ENST00000523814.5_1_8:48203675-48320543:+|nuORF;ENST00000521214.5_1_8:48191985-48612988:+|nuORF nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5059814453125 3 418.505372 1252.49429 0.46915 0.00019634 1.1944 0.00049985 1.6635 0.00069619 418.5058184565272 87.913 0.42958 87.408 87.195 87.624 -0.50423 66 19 4 0 0 0 0.46131 1 48112 48112 14.838 2.6103 1 6279800 61290 16347 40918 41841 71407 71407 -0.1218620725371693 SSDSEKEDDLE 11 Unmodified _SSDSEKEDDLE_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR;ENST00000517824.5_1_8:48203675-48352885:+|nuORF;ENST00000523814.5_1_8:48203675-48320543:+|nuORF;ENST00000521214.5_1_8:48191985-48612988:+|nuORF nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 418.505372 1252.49429 0.0043147 1.8057E-06 1.7375 0.00072714 1.7418 0.00072895 418.5062062952745 87.398 0.32728 87.398 87.204 87.531 0 -0.0050176 0.00046196 NaN 14.838 34 14 3 NaN NaN NaN NaN 0 NaN NaN 0 933210 61291 16347 40918 41841 -0.1218620725371693 SSEFEHLNQFL 11 Unmodified _SSEFEHLNQFL_ 0 0 0 ENSG00000250374|ENST00000503032|TRIM75 ENSG00000250374|ENST00000503032|TRIM75 ENSG00000250374|ENST00000503032|TRIM75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.8832702636719 3 450.882337 1349.62518 -0.23701 -0.00010686 0.35464 0.0001599 0.11763 5.3037E-05 450.88285963596843 17.532 0.21938 17.532 17.366 17.586 0 57 32 2 0 0 0 0.7326 1 8562 8562 0.40827 0 1 1264500 61292 10751 40919 41842 71408 71408 -0.035647270243771345 SSEKNLVF 8 Unmodified _SSEKNLVF_ 0 0 0 CCDC110|p.I511Nfs*3|1|0.13|ENSG00000168491|chr4:185459055-185459056|-/T|frameshift_variant;ENSG00000168491|ENST00000307588|CCDC110 CCDC110|p.I511Nfs*3|1|0.13|ENSG00000168491|chr4:185459055-185459056|-/T|frameshift_variant CCDC110|p.I511Nfs*3|1|0.13|ENSG00000168491|chr4:185459055-185459056|-/T|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 462.2467651367188 2 462.245275 922.475997 NaN NaN NaN NaN NaN NaN NaN 105.28 1 99.109 98.609 99.609 -6.1757 0 0 0 0.97444 1 70543 70543 4.3292 0 1 61293 51 40920 41843 71409 71409 0.011657921435357821 SSEKPNAEDMT 11 Unmodified _SSEKPNAEDMT_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7568359375 2 604.758617 1207.50268 -0.65696 -0.0003973 -1.939 -0.0011727 -2.596 -0.00157 604.7575858569018 56.019 0.24994 56.019 55.934 56.184 0 25 11 3 0 0 0 0.42108 1 31138 31138 20.415 2.2682 1 4723800 61294 3948 40921 41844 71410 71410 -0.09276931818135381 SSEKYLGKMF 10 Unmodified _SSEKYLGKMF_ 0 0 0 REV__ENSG00000198677|ENST00000358746|SKIC3 REV__ENSG00000198677|ENST00000358746|SKIC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3004760742188 2 595.299724 1188.5849 NaN NaN NaN NaN NaN NaN NaN 101.29 1 101.25 100.75 101.75 -0.04216 0 0 0 0.97302 1 56270 56270 3.5965 0 1 + 61295 24037 40922 41845 71411 71411 -0.0018536494851559837 SSELSTSTSEG 11 Unmodified _SSELSTSTSEG_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;ENST00000554557.5_1_14:68248216-68272009:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.735107421875 2 542.735665 1083.45678 -0.0005065 -2.749E-07 -0.41577 -0.00022566 -0.41628 -0.00022593 542.7354798667105 35.644 0.35522 35.644 35.46 35.816 0 31 17 2 0 0 0 0.68427 1 18823 18823 5.7319 0 1 13517000 61296 1070 40923 41846 71412 71412 -0.08161253728712836 SSEPVKETVQ 10 Unmodified _SSEPVKETVQ_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8;ENST00000479234.1_1_6:155143366-155146055:+|nuORF nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2808227539062 2 552.282586 1102.55062 -0.21802 -0.00012041 0.011796 6.5145E-06 -0.20622 -0.00011389 552.2824815924344 26.741 0.27439 26.741 26.614 26.889 0 29 12 3 0 0 0 0.17804 1 13734 13734 41.956 12.874 1 2794400 61297 10419 40924 41847 71413 71413 0.0034451016424554837 SSEQSARLLDY 11 Unmodified _SSEQSARLLDY_ 0 0 0 ENSG00000204296|ENST00000533191|TSBP1;nc|ENSG00000204296|Q5SRN2-2|TSBP1;nc|ENSG00000204296|Q5SRN2|TSBP1 ENSG00000204296|ENST00000533191|TSBP1 ENSG00000204296|ENST00000533191|TSBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.8079223632812 2 634.809499 1267.60444 -0.11466 -7.2786E-05 -1.4634 -0.000929 -1.5781 -0.0010018 634.8087462898562 31.41 0.29329 31.307 31.188 31.481 -0.10269 29 11 3 0 0 0 0.70147 1 16414 16414 2.4985 0 1 7004700 61298 10262 40925 41848 71414 71414 -0.01865317404030975 SSERNESVIHY 11 Unmodified _SSERNESVIHY_ 0 0 0 nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9;ENST00000545556.6_1_12:123699379-123710843:-|nuORF nc|ENSG00000051825|Q99550-2|MPHOSPH9 nc|ENSG00000051825|Q99550-2|MPHOSPH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8789978027344 3 440.877474 1319.61059 NaN NaN NaN NaN NaN NaN NaN 24.087 1 24.087 23.587 24.587 0 0 0 0 0.93893 1 12295 12295 1.3296 0 1 61299 736 40926 41849 71415 71415 -0.036427991725076936 SSERPLWPL 9 Unmodified _SSERPLWPL_ 0 0 0 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 ENSG00000160973|ENST00000377317|FOXH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.1980285644531 3 362.197708 1083.57129 0.5451 0.00019743 1.4802 0.00053612 2.0253 0.00073355 362.1981485848586 42.916 0.32472 42.9 42.738 43.063 -0.015667 38 14 4 0 0 0 0.59218 1 22955 22955 0.96228 0 1 18906000 61300 6775 40927 41850 71416 71416 0.032851453345756454 SSETWHCCL 9 Unmodified _SSETWHCCL_ 0 0 0 ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF ENST00000548878.6_1_12:110874873-110883331:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2107543945312 2 533.210052 1064.40555 0.31283 0.00016681 -0.53225 -0.0002838 -0.21942 -0.000117 533.2102956011173 90.398 0.36299 90.398 90.15 90.513 0 36 21 2 0 0 0 0.54444 1 49928 49928 4.756 1.8668 1 1144300 61301 15139 40928 41851 71417 71417 -0.12407572508095654 SSEWDDDEGSS 11 Unmodified _SSEWDDDEGSS_ 0 0 0 REV__PPP1R15B|p.E540D|1|0.29|ENSG00000158615|chr1:204409792-204409792|T/G|missense_variant REV__PPP1R15B|p.E540D|1|0.29|ENSG00000158615|chr1:204409792-204409792|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2111206054688 2 607.210012 1212.40547 NaN NaN NaN NaN NaN NaN NaN 6.6622 1 6.6711 6.1711 7.1711 0.0089307 0 0 0 0.94307 1 3336 3336 0.30703 0.30703 1 + 61302 30077 40929 41852 71418 71418 -0.19223622493404946 SSFAVLHPFSP 11 Unmodified _SSFAVLHPFSP_ 0 0 0 REV__ENSG00000175787|ENST00000395395|ZNF169 REV__ENSG00000175787|ENST00000395395|ZNF169 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8736572265625 3 396.873113 1187.59751 0.96062 0.00038125 0.054954 2.181E-05 1.0156 0.00040306 396.8731751542879 49.939 0.40491 44.399 44.141 44.546 -5.5391 62 25 3 0 0 0 0.65108 1 31298 31298 7.0371 2.8476 1 65458000 + 61303 22891 40930 41853 71419 71419 0.011214145060421288 SSFDGIIAM 9 Oxidation (M) _SSFDGIIAM(Oxidation (M))_ SSFDGIIAM(1) SSFDGIIAM(44) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.72265625 2 478.723318 955.432083 0.57197 0.00027381 -0.71876 -0.00034409 -0.14679 -7.0272E-05 478.72295852552236 54.802 0.30412 54.802 54.664 54.968 0 22 12 2 0 0 0 0.052168 1 30441 30441 44.407 14.182 1 6079600 61304 10427 40931 41854 71420 71420 1692 -0.04741560345109974 SSFDGIIAM 9 Oxidation (M) _SSFDGIIAM(Oxidation (M))_ SSFDGIIAM(1) SSFDGIIAM(120) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.439208984375 1 956.43936 955.432083 0.21905 0.00020951 -1.0726 -0.0010259 -0.85353 -0.00081635 956.4387058732748 54.821 0.40871 54.821 54.62 55.029 0 52 17 4 0 0 0 0.0036753 1 30495 30495 123.1 45.112 1 37680000 61305 10427 40931 41854 71421 71421 1692 -0.04741560345109974 SSFDGIIAM 9 Oxidation (M) _SSFDGIIAM(Oxidation (M))_ SSFDGIIAM(1) SSFDGIIAM(60) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.439208984375 1 956.43936 955.432083 0.36508 0.00034918 -0.16325 -0.00015614 0.20183 0.00019304 956.4394436195983 55.462 0.35599 54.984 54.796 55.152 -0.47798 35 16 3 0 0 0 0.023164 1 30034 30034 60.39 15.983 1 5285900 61306 10427 40931 41854 71422 71422 1692 -0.04741560345109974 SSFDGIIAM 9 Oxidation (M) _SSFDGIIAM(Oxidation (M))_ SSFDGIIAM(1) SSFDGIIAM(51) 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 958.4464111328125 1 956.43936 955.432083 0.63746 0.00060969 -0.096248 -9.2056E-05 0.54121 0.00051764 956.4395525899986 63.281 0.3902 57.105 56.916 57.306 -6.1757 46 22 3 0 0 0 0.038285 1 40878 40878 50.855 8.7605 1 36425000 61307 10427 40931 41854 71423 71423 1692 -0.04741560345109974 SSFDGIIAM 9 Oxidation (M) _SSFDGIIAM(Oxidation (M))_ 0 0 1 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.723318 955.432083 0.58121 0.00027824 0.69357 0.00033203 1.2748 0.00061027 478.7235204856483 55.509 0.20813 55.031 54.883 55.091 -0.47798 0.1144 0.0010825 NaN 44.407 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 744720 61308 10427 40931 41854 1692 -0.04741560345109974 SSFDGIIAM 9 Unmodified _SSFDGIIAM_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.4478149414062 1 940.444445 939.437169 0.15785 0.00014845 -0.26952 -0.00025347 -0.11167 -0.00010502 940.4439290252151 74.814 0.23285 74.814 74.716 74.948 0 16 11 2 0 0 0 0.32871 1 41622 41622 15.847 0 1 671040 61309 10427 40931 41855 71424 71424 -0.034972564824897745 SSFDGIIAM 9 Unmodified _SSFDGIIAM_ 0 0 0 ENSG00000213246|ENST00000225504|SUPT4H1;ENST00000423067.1_1_2:75878548-75878614:-|nuORF ENSG00000213246|ENST00000225504|SUPT4H1 ENSG00000213246|ENST00000225504|SUPT4H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 940.4452514648438 1 940.444445 939.437169 0.45308 0.00042609 0.31023 0.00029175 0.76331 0.00071785 940.4449805692609 83.024 0.61578 76.848 76.554 77.17 -6.1757 80 33 3 0 0 0 0.012148 3 54551 54417;54551;54687 74.423 7.0789 1 62231000 61310 10427 40931 41855 71425;71426;71427 71426 -0.034972564824897745 SSFFQQIQRS 10 Unmodified _SSFFQQIQRS_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.3085327148438 2 614.309469 1226.60439 0.95757 0.00058824 -0.079206 -4.8657E-05 0.87836 0.00053958 614.3093376817087 58.302 0.21648 58.241 58.097 58.313 -0.060719 26 10 3 0 0 0 0.20962 1 31712 31712 32.786 11.249 1 6262100 61311 5731 40932 41856 71428 71428 0.00014727386610502435 SSFFQQIQRS 10 Unmodified _SSFFQQIQRS_ 0 0 0 ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145 ENSG00000145860|ENST00000424310|RNF145 ENSG00000145860|ENST00000424310|RNF145 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 614.309469 1226.60439 1.3343 0.00081965 -0.47088 -0.00028927 0.86338 0.00053038 614.3088690479055 64.237 0.40169 58.061 57.861 58.262 -6.1757 -0.08999 -0.00031292 NaN 32.786 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 21045000 61312 5731 40932 41856 0.00014727386610502435 SSFNNSSHD 9 Unmodified _SSFNNSSHD_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.6973876953125 2 497.696677 993.378802 0.59039 0.00029384 -0.64882 -0.00032292 -0.058429 -2.908E-05 497.6964362018914 54.815 0.30412 54.815 54.664 54.968 0 28 12 3 0 0 0 0.15471 1 30425 30425 27.629 11.782 1 5623800 + 61313 17497 40933 41857 71429 71429 -0.11815221803419718 SSFPLDALSI 10 Unmodified _SSFPLDALSI_ 0 0 0 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2797241210938 2 525.279315 1048.54408 0.38626 0.0002029 -0.35383 -0.00018586 0.032429 1.7034E-05 525.279176394958 51.78 0.13417 51.78 51.689 51.823 0 9 5 2 0 0 0 0.16524 1 28633 28633 37.974 3.5723 1 1530900 + 61314 29705 40934 41858 71430 71430 0.02174617003538515 SSFPLDALSI 10 Unmodified _SSFPLDALSI_ 0 0 0 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 REV__nc|ENSG00000151718|Q6AWC2-4|WWC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 525.279315 1048.54408 0.38626 0.0002029 -0.35383 -0.00018586 0.032429 1.7034E-05 525.279176394958 51.78 0.13417 51.78 51.689 51.823 0 0 0 NaN 37.974 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1530900 + 61315 29705 40934 41858 0.02174617003538515 SSFPLRTWS 9 Unmodified _SSFPLRTWS_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7769775390625 2 540.777274 1079.53999 -0.46709 -0.00025259 -2.5182 -0.0013618 -2.9853 -0.0016144 540.7762984303905 34.814 0.18079 34.623 34.541 34.722 -0.19131 19 7 3 0 0 0 0.06294 1 18202 18202 41.84 6.9076 1 5360300 + 61316 21439 40935 41859 71431 71431 0.003405723004561878 SSFPLRTWS 9 Unmodified _SSFPLRTWS_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.777274 1079.53999 -0.46709 -0.00025259 -2.5182 -0.0013618 -2.9853 -0.0016144 540.7762984303905 34.814 0.18079 34.623 34.541 34.722 -0.19131 -0.034433 -6.8778E-05 NaN 41.84 19 7 3 NaN NaN NaN NaN 0 NaN NaN 0 5360300 + 61317 21439 40935 41859 0.003405723004561878 SSFPLRTWS 9 Unmodified _SSFPLRTWS_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.777274 1079.53999 0.082962 4.4864E-05 -2.2988 -0.0012432 -2.2159 -0.0011983 540.7757229428845 34.607 0.10686 34.635 34.561 34.668 0.027401 -0.022503 0.00016846 NaN 41.84 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 713920 + 61318 21439 40935 41859 0.003405723004561878 SSFPLRTWS 9 Unmodified _SSFPLRTWS_ 0 0 0 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 540.777274 1079.53999 0.74724 0.00040409 -2.9535 -0.0015972 -2.2063 -0.0011931 540.775653246496 39.156 0.39119 34.705 34.523 34.914 -4.4509 0.048358 -0.00053959 NaN 41.84 36 24 2 NaN NaN NaN NaN 0 NaN NaN 0 11846000 + 61319 21439 40935 41859 0.003405723004561878 SSFSETVAF 9 Unmodified _SSFSETVAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 974.4490966796875 1 974.446553 973.439277 0.56371 0.00054931 0.53792 0.00052418 1.1016 0.0010735 974.4468966607454 60.268 0.23129 60.268 60.137 60.368 0 14 9 2 0 0 0 0.14602 1 33596 33596 28.487 15.955 1 847090 61320 5337 40936 41860 71432 71432 -0.04850504473051842 SSFSRVGSSNF 11 Unmodified _SSFSRVGSSNF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7781982421875 2 587.778002 1173.54145 -0.49327 -0.00028993 1.6994 0.00099886 1.2061 0.00070893 587.7789584787671 35.768 0.17144 35.546 35.45 35.621 -0.2224 10 6 2 0 0 0 0.018218 1 18762 18762 59.052 36.316 1 1381800 + 61321 165 40937 41861 71433 71433 -0.03837838401409499 SSGALCHFPF 10 Unmodified _SSGALCHFPF_ 0 0 0 FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2456665039062 2 533.244752 1064.47495 -0.041701 -2.2237E-05 1.2237 0.00065255 1.182 0.00063031 533.2451379102006 31.969 0.19496 31.84 31.745 31.94 -0.12915 19 7 3 0 0 0 0.19662 1 16626 16626 34.102 3.8776 1 2365500 61322 15896 40938 41862 71434 71434 -0.05470745497041207 SSGALCHFPF 10 Unmodified _SSGALCHFPF_ 0 0 0 FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant FN1|p.N416S|1|0.46|ENSG00000115414|chr2:215423496-215423496|T/C|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.244752 1064.47495 -0.53682 -0.00028626 2.4309 0.0012963 1.8941 0.00101 533.2461517725468 32.039 0.14349 32.039 31.983 32.126 0 0.099455 0.0011351 NaN 34.102 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 885080 61323 15896 40938 41862 -0.05470745497041207 SSGDEQSLLEL 11 Unmodified _SSGDEQSLLEL_ 0 0 0 nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2825317382812 2 589.282783 1176.55101 0.64168 0.00037813 -1.1331 -0.0006677 -0.4914 -0.00028957 589.2821068871802 72.965 0.33497 72.489 72.295 72.63 -0.47588 36 14 3 0 0 0 0.46131 1 39905 39905 18.373 0 1 2497700 61324 7298 40939 41863 71435 71435 -0.030201149065533173 SSGDEQSLLEL 11 Unmodified _SSGDEQSLLEL_ 0 0 0 nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.28173828125 2 589.282783 1176.55101 0.68099 0.0004013 -2.5598 -0.0015085 -1.8788 -0.0011072 589.2810051911663 74.047 0.32904 73.571 73.412 73.741 -0.47588 42 14 4 0 0 0 0.46131 1 40537 40537 18.373 0 1 3107500 61325 7298 40939 41863 71436 71436 -0.030201149065533173 SSGDEQSLLEL 11 Unmodified _SSGDEQSLLEL_ 0 0 0 nc|ENSG00000165125|Q9H1D0-2|TRPV6;ENSG00000165125|ENST00000359396|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 nc|ENSG00000165125|Q9H1D0-2|TRPV6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 589.282783 1176.55101 0.092847 5.4713E-05 0.055966 3.298E-05 0.14881 8.7693E-05 589.2824897878405 72.5 0.21814 72.542 72.399 72.617 0.041733 0.026295 0.0012229 NaN 18.373 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1882900 61326 7298 40939 41863 -0.030201149065533173 SSGDGFTWDF 10 Unmodified _SSGDGFTWDF_ 0 0 0 REV__nc|ENSG00000008710|P98161-2|PKD1;REV__ENST00000532415.5_1_16:18480742-18495490:-|nuORF REV__nc|ENSG00000008710|P98161-2|PKD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7227783203125 2 559.724904 1117.43525 NaN NaN NaN NaN NaN NaN NaN 62.053 1 62.053 61.553 62.553 0 0 0 0 0.92825 1 34602 34602 6.7232 0.96273 1 + 61327 17027;28463 40940 41864 71437 71437 -0.11876593966758264 SSGDSDHIDA 10 Unmodified _SSGDSDHIDA_ 0 0 0 REV__nc|ENSG00000148908|O43665-1|RGS10 REV__nc|ENSG00000148908|O43665-1|RGS10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1003.057922363281 1 1003.39631 1002.38903 -0.28219 -0.00028315 -0.42158 -0.00042301 -0.70377 -0.00070616 1003.3938442973313 22.038 0.20212 22.06 21.918 22.121 0.022894 11 8 2 0 0 0 0.24012 1 11144 11144 0 0 1 491690 + 61328 29697 40941 41865 71438 71438 -0.1120665886886627 SSGKKCKEKMI 11 Unmodified _SSGKKCKEKMI_ 0 0 0 ENST00000495272.5_1_1:95705425-95712423:+|nuORF;ENSG00000122481|ENST00000370202|RWDD3 ENST00000495272.5_1_1:95705425-95712423:+|nuORF ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5591125488281 3 413.558031 1237.65226 1.0482 0.00043349 0.78829 0.000326 1.8365 0.00075949 413.55851424555334 80.328 0.3157 74.153 73.942 74.258 -6.1757 31 18 2 0 0 0 0.65846 1 52599 52599 4.1166 0 1 10040000 61329 3639 40942 41866 71439 71439 0.04294341990794237 SSGLWFSDCL 10 Unmodified _SSGLWFSDCL_ 0 0 0 ENST00000312916.11_1_5:76326223-76326436:+|nuORF ENST00000312916.11_1_5:76326223-76326436:+|nuORF ENST00000312916.11_1_5:76326223-76326436:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2509765625 2 557.747324 1113.4801 -0.13128 -7.3222E-05 0.44256 0.00024684 0.31128 0.00017361 557.7476089933808 31.927 0.60341 31.927 31.523 32.126 0 120 29 7 0 0 0 0.5905 1 16475 16475 11.64 0 1 104820000 61330 11705 40943 41867 71440 71440 -0.07210486425083218 SSGNRPLSL 9 Unmodified _SSGNRPLSL_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7552185058594 2 465.753798 929.493044 0.15603 7.267E-05 0.080855 3.7658E-05 0.23688 0.00011033 465.7537101219351 28.553 0.21346 28.583 28.467 28.681 0.029564 16 7 3 0 0 0 0.05447 1 14848 14848 43.858 0.085901 1 3838300 + 61331 24247 40944 41868 71441 71441 0.025477127493331864 SSGNRPLSL 9 Unmodified _SSGNRPLSL_ 0 0 0 REV__ENSG00000205978|ENST00000382554|NYNRIN REV__ENSG00000205978|ENST00000382554|NYNRIN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 465.753798 929.493044 0.15603 7.267E-05 0.080855 3.7658E-05 0.23688 0.00011033 465.7537101219351 28.553 0.21346 28.583 28.467 28.681 0.029564 0.018081 0.00043339 NaN 43.858 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3838300 + 61332 24247 40944 41868 0.025477127493331864 SSGPFLERAL 10 Unmodified _SSGPFLERAL_ 0 0 0 REV__ENSG00000186280|ENST00000335080|KDM4D REV__ENSG00000186280|ENST00000335080|KDM4D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2280883789062 2 538.790381 1075.56621 0.52728 0.00028409 -0.87069 -0.00046912 -0.34342 -0.00018503 538.7898350571411 39.009 0.4514 39.009 38.725 39.177 0 43 20 3 0 0 0 0.21783 1 20850 20850 24.021 3.5669 1 5819900 + 61333 23563 40945 41869 71442 71442 0.03144841471953441 SSGPIPALA 9 Unmodified _SSGPIPALA_ 0 0 0 ENST00000442856.1_1_16:79338-84879:-|nuORF;nc|ENSG00000292373|Q01113-2|IL9R;ENSG00000124334|ENST00000244174|IL9R ENST00000442856.1_1_16:79338-84879:-|nuORF ENST00000442856.1_1_16:79338-84879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.44970703125 1 812.451245 811.443968 0.17161 0.00013943 -0.59173 -0.00048076 -0.42012 -0.00034133 812.451529028596 74.814 0.45137 74.814 74.497 74.948 0 25 21 2 0 0 0 0.62242 1 41583 41583 0 0 1 616180 61334 3778 40946 41870 71443 71443 0.03070424460349841 SSGRVGGR 8 Unmodified _SSGRVGGR_ 0 0 0 REV__ENST00000404251.1_1_7:72936434-72936533:-|nuORF REV__ENST00000404251.1_1_7:72936434-72936533:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.2140808105469 2 388.212101 774.409649 NaN NaN NaN NaN NaN NaN NaN 19.142 1 16.486 15.986 16.986 -2.6564 0 0 0 0.95973 1 10118 10118 8.5933 0 1 + 61335 26639 40947 41871 71444 71444 0.013420210921481157 SSHCCGSG 8 Unmodified _SSHCCGSG_ 0 0 0 REV__ENSG00000187173|ENST00000368779|LCE2A REV__ENSG00000187173|ENST00000368779|LCE2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1074523925781 2 369.120706 736.226858 NaN NaN NaN NaN NaN NaN NaN 0.37531 1 0.37531 -0.12469 0.87531 0 0 0 0 0.97444 1 187 187 0 0 1 + 61336 21484 40948 41872 71445 71445 -0.15180617356327275 SSHRKKKKQ 9 Unmodified _SSHRKKKKQ_ 0 0 0 REV__ENSG00000109265|ENST00000682029|CRACD REV__ENSG00000109265|ENST00000682029|CRACD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2201843261719 3 376.231634 1125.67307 NaN NaN NaN NaN NaN NaN NaN 18.803 1 18.809 18.309 19.309 0.0060463 0 0 0 0.86004 1 9543 9543 0.26902 0 1 + 61337 16810 40949 41873 71446 71446 0.11526436476992785 SSHRYAKG 8 Unmodified _SSHRYAKG_ 0 0 0 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852;REV__ENSG00000196345|ENST00000426540|ZKSCAN7 REV__nc|ENSG00000178917|Q6ZMS4|ZNF852 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2332153320312 2 453.233033 904.451513 0.7916 0.00035878 0.85664 0.00038826 1.6482 0.00074704 453.2332246180847 18.284 0.16557 15.663 15.619 15.784 -2.6215 14 10 2 0 0 0 0.79669 1 9667 9667 8.5933 0 1 1422000 + 61338 29815;23819 40950 41874 71447 71447 -0.004534232193350363 SSHVKHFPI 9 Unmodified _SSHVKHFPI_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;ENST00000551743.5_1_14:105849507-105861006:+|nuORF;ENST00000551801.1_1_14:105857872-105861006:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2;ENST00000551801.1_1_14:105857872-105861006:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.1940307617188 3 351.194298 1050.56106 1.1345 0.00039844 -0.14249 -5.0041E-05 0.99204 0.0003484 351.1942849350544 38.556 0.49554 34.187 33.884 34.379 -4.3689 69 31 4 0 0 0 0.43463 1 22825 22825 7.1017 0 1 13706000 61339 8832;15174 40951 41875 71448 71448 0.03780582400008825 SSINSQLHQSM 11 Unmodified _SSINSQLHQSM_ 0 0 0 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 REV__nc|ENSG00000243156|Q7RTP6-5|MICAL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2899169921875 2 616.290419 1230.56629 NaN NaN NaN NaN NaN NaN NaN 93.649 1 93.649 93.149 94.149 0 0 0 0 0.94216 1 51772 51772 0.96228 0 1 + 61340 29971 40952 41876 71449 71449 -0.03977526590369962 SSIPPGSISL 10 Unmodified _SSIPPGSISL_ 0 0 0 REV__ENSG00000171722|ENST00000367935|SPATA46 REV__ENSG00000171722|ENST00000367935|SPATA46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2662963867188 2 479.266207 956.517862 1.0819 0.00051851 -1.9059 -0.00091342 -0.82398 -0.00039491 479.26499015163756 74.771 1.032 68.595 68.268 69.3 -6.1757 105 55 3 0 0 0 0.043729 1 48762 48762 61.357 7.5247 1 59744000 + 61341 22593 40953 41877 71450 71450 0.03786347832055981 SSIVFALPMC 10 Unmodified _SSIVFALPMC_ 0 0 0 REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF REV__ENST00000286298.4_1_5:149360345-149360531:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.266845703125 2 534.266838 1066.51912 NaN NaN NaN NaN NaN NaN NaN 15.239 1 12.712 12.212 13.212 -2.5273 0 0 0 0.92825 1 7801 7801 6.7232 0.96273 1 + 61342 25222 40954 41878 71451 71451 -0.011474773950567396 SSIVLVLY 8 Unmodified _SSIVLVLY_ 0 0 0 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 ENSG00000196131|ENST00000341702|VN1R2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.3255310058594 2 447.270761 892.52697 -0.22994 -0.00010285 -1.328 -0.00059397 -1.5579 -0.00069681 447.2703536539139 102.69 0.086418 102.65 102.58 102.66 -0.047928 4 2 2 0 0 0 8.7369 1 57027 57027 0.79363 0 1 1071100 61343 9766 40955 41879 71452 71452 0.07640741188367883 SSKAKAKS 8 Unmodified _SSKAKAKS_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20221201_MKP_PDAC_01 4 403.7398986816406 2 403.74016 805.465767 NaN NaN NaN NaN NaN NaN NaN 84.141 1 77.966 77.466 78.466 -6.1757 0 0 0 0.97444 1 55344 55344 0.6015 0 1 61344 3713 40956 41880 71453 71453 0.055252292089562616 SSKCKKLKDI 10 Unmodified _SSKCKKLKDI_ 0 0 0 REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF REV__ENST00000466229.5_1_1:196648727-196709933:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8945617675781 3 383.893519 1148.65873 1.5821 0.00060736 0.15972 6.1317E-05 1.7418 0.00066868 383.8936739933888 90.961 0.3995 84.785 84.474 84.873 -6.1757 47 23 3 0 0 0 0.65891 1 60125 60125 7.4771 7.4771 1 17657000 + 61345 16762 40957 41881 71454 71454 0.0903460321383136 SSKGSLGGGF 10 Unmodified _SSKGSLGGGF_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7273864746094 2 448.727249 895.439946 0.50411 0.00022621 -0.15125 -6.7869E-05 0.35286 0.00015834 448.7271824829844 28.532 0.2346 28.47 28.319 28.554 -0.062159 14 8 2 0 0 0 0.077785 1 14709 14709 51.63 19.324 1 1627000 + 61346 169 40958 41882 71455 71455 -0.011956650333104335 SSKKKRKK 8 Unmodified _SSKKKRKK_ 0 0 0 REV__ENSG00000006062|ENST00000344686|MAP3K14 REV__ENSG00000006062|ENST00000344686|MAP3K14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.3338928222656 2 495.33255 988.650548 1.2457 0.00061706 -0.18383 -9.1059E-05 1.0619 0.000526 495.33220612205946 102.61 0.22047 96.43 96.316 96.536 -6.1757 61 39 2 0 0 0 0.81107 1 68837 68837 0 0 1 6550500 + 61347 16981 40959 41883 71456 71456 0.15576837079368033 SSKLLRAFY 9 Unmodified _SSKLLRAFY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2113342285156 3 362.209836 1083.60768 NaN NaN NaN NaN NaN NaN NaN 49.158 1 49.115 48.615 49.615 -0.04369 0 0 0 0.83329 1 26552 26552 4.1895 2.3453 1 61348 1446 40960 41884 71457 71457 0.06922022231265146 SSKRKKRRF 9 Unmodified _SSKRKKRRF_ 0 0 0 ENST00000217381.2_1_20:31995804-31996281:-|nuORF ENST00000217381.2_1_20:31995804-31996281:-|nuORF ENST00000217381.2_1_20:31995804-31996281:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2516174316406 3 398.251029 1191.73126 NaN NaN NaN NaN NaN NaN NaN 88.437 1 88.437 87.937 88.937 0 0 0 0 0.86004 1 48951 48951 0.26902 0 1 61349 11019 40961 41885 71458 71458 0.14306118122249245 SSKRRAVL 8 Unmodified _SSKRRAVL_ 0 0 0 nc|ENSG00000291071|Q05BU3|FAM86JP nc|ENSG00000291071|Q05BU3|FAM86JP nc|ENSG00000291071|Q05BU3|FAM86JP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.7883911132812 2 458.787976 915.561398 1.8238 0.00083676 -1.4464 -0.00066361 0.3774 0.00017315 458.787188689035 82.087 0.98023 82.149 81.862 82.842 0.061996 94 38 5 0 0 0 0.80992 2 45294 45294;45630 0.69038 0 1 225050000 61350 16641 40962 41886 71459;71460 71459 0.10024002119837405 SSKSVATM 8 Unmodified _SSKSVATM_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.4086303710938 1 810.40258 809.395304 0.45208 0.00036637 2.8029 0.0022715 3.255 0.0026378 810.4046641284426 74.883 0.25444 74.929 74.793 75.048 0.045959 15 11 2 0 0 0 0.70294 1 41260 41260 16.942 0 1 2341800 + 61351 22834 40963 41887 71461 71461 -0.017018121710179912 SSLCSFSEVKL 11 Unmodified _SSLCSFSEVKL_ 0 0 0 ENST00000436008.6_1_6:3270099-3270333:-|nuORF ENST00000436008.6_1_6:3270099-3270333:-|nuORF ENST00000436008.6_1_6:3270099-3270333:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 600.3037719726562 2 600.302464 1198.59037 NaN NaN NaN NaN NaN NaN NaN 88.422 1 82.247 81.747 82.747 -6.1757 0 0 0 0.79635 1 58336 58336 12.241 1.4167 1 61352 13326 40964 41888 71462 71462 -0.0009768615668690472 SSLCSFTGFL 10 Unmodified _SSLCSFTGFL_ 0 0 0 REV__nc|ENSG00000125995|P60602-2|ROMO1 REV__nc|ENSG00000125995|P60602-2|ROMO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2290649414062 2 531.252243 1060.48993 0.6955 0.00036949 -3.4032 -0.001808 -2.7077 -0.0014385 532.2533852455435 60.626 0.38709 60.626 60.451 60.838 0 33 16 3 0 0 0 0.23325 1 33745 33745 10.074 0.6908 1 1574800 + 61353 29618 40965 41889 71463 71463 -0.03789298419678744 SSLKEKHHHF 10 Unmodified _SSLKEKHHHF_ 0 0 0 ENST00000574215.5_1_3:27203940-27332977:-|nuORF;nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10 ENST00000574215.5_1_3:27203940-27332977:-|nuORF ENST00000574215.5_1_3:27203940-27332977:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.865234375 3 417.219395 1248.63635 1.4461 0.00060335 -0.019838 -8.2768E-06 1.4263 0.00059507 417.21938501715204 20.934 0.2425 18.241 18.096 18.339 -2.693 21 13 2 0 0 0 0.66569 1 11137 11137 3.5871 0 1 3056300 61354 7001 40966 41890 71464 71464 0.021981398604111746 SSLLAEYEKI 10 Unmodified _SSLLAEYEKI_ 0 0 0 ENST00000432094.6_1_19:53960664-53960838:+|nuORF ENST00000432094.6_1_19:53960664-53960838:+|nuORF ENST00000432094.6_1_19:53960664-53960838:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.8113403320312 2 576.810979 1151.6074 NaN NaN NaN NaN NaN NaN NaN 31.538 1 31.538 31.038 32.038 0 0 0 0 0.57227 1 16431 16431 22.736 1.1993 1 61355 13270 40967 41891 71465 71465 0.037665577207462775 SSLLLNRKG 9 Unmodified _SSLLLNRKG_ 0 0 0 ENST00000418273.2_1_10:88729167-88729401:-|nuORF;ENST00000609111.1_1_10:88729023-88729401:-|nuORF ENST00000418273.2_1_10:88729167-88729401:-|nuORF ENST00000418273.2_1_10:88729167-88729401:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.3015747070312 2 494.300916 986.587279 1.2909 0.00063811 0.10669 5.2738E-05 1.3976 0.00069085 494.3008659805779 97.817 0.55872 91.642 91.349 91.908 -6.1757 102 35 4 0 0 0 0.32871 1 64668 64668 15.847 15.847 1 220420000 61356 13066 40968 41892 71466 71466 0.09344851571472645 SSLTCGGP 8 Unmodified _SSLTCGGP_ 0 0 0 REV__ENST00000484252.5_1_2:128398362-128399806:-|nuORF REV__ENST00000484252.5_1_2:128398362-128399806:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.4939575195312 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 62.464 1 62.464 61.964 62.964 0 0 0 0 0.97444 1 34841 34841 2.8892 0 1 + 61357 27756 40969 41893 71467 71467 -0.0601034326792842 SSLVLHHRT 9 Unmodified _SSLVLHHRT_ 0 0 0 ENSG00000181894|ENST00000598312|ZNF329 ENSG00000181894|ENST00000598312|ZNF329 ENSG00000181894|ENST00000598312|ZNF329 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2969970703125 2 525.296165 1048.57778 NaN NaN NaN NaN NaN NaN NaN 75.14 1 75.186 74.686 75.686 0.045959 0 0 0 0.76439 1 41432 41432 7.2892 0 1 61358 9004 40970 41894 71468 71468 0.05543083285942885 SSLVQVTTETI 11 Unmodified _SSLVQVTTETI_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3175659179688 2 589.319168 1176.62378 0.7075 0.00041695 1.2309 0.00072537 1.9384 0.0011423 589.3203093182927 42.607 0.21849 42.607 42.445 42.663 0 23 10 3 0 0 0 0.39949 1 23057 23057 21.537 0 1 3909400 + 61359 19249 40971 41895 71469 71469 0.04253638886871158 SSLVQVTTETI 11 Unmodified _SSLVQVTTETI_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 589.319168 1176.62378 0.7075 0.00041695 1.2309 0.00072537 1.9384 0.0011423 589.3203093182927 42.607 0.21849 42.607 42.445 42.663 0 0 0 NaN 21.537 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3909400 + 61360 19249 40971 41895 0.04253638886871158 SSLWGRPRRYR 11 Unmodified _SSLWGRPRRYR_ 0 0 0 REV__ENST00000601065.5_1_19:49588680-49589718:+|nuORF REV__ENST00000601065.5_1_19:49588680-49589718:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.9339599609375 3 478.600609 1432.78 0.12157 5.8186E-05 -1.2535 -0.00059994 -1.1319 -0.00054175 478.5996845996696 38.413 0.14799 38.43 38.355 38.503 0.01704 11 6 3 0 0 0 0.72311 1 20434 20434 2.084 1.0704 1 1943200 + 61361 29254 40972 41896 71470 71470 0.08091986691351849 SSLWYMFVA 9 Unmodified _SSLWYMFVA_ 0 0 0 REV__nc|ENSG00000155463|Q15070-2|OXA1L REV__nc|ENSG00000155463|Q15070-2|OXA1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5126342773438 3 368.512528 1102.51575 0.0078722 2.901E-06 0.38822 0.00014306 0.39609 0.00014596 368.51257378342245 17.33 0.076118 17.335 17.291 17.367 0.0050564 8 5 2 0 0 0 0.39863 1 8742 8742 8.1555 0 1 767960 + 61362 21271 40973 41897 71471 71471 -0.03140404177406708 SSMHNIIRCEL 11 Unmodified _SSMHNIIRCEL_ 0 0 0 REV__nc|ENSG00000197057|Q6ZMT9-2|DTHD1 REV__nc|ENSG00000197057|Q6ZMT9-2|DTHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8824157714844 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 74.606 1 74.131 73.631 74.631 -0.47588 0 0 0 0.85601 1 40834 40834 4.7159 0 1 + 61363 23890 40974 41898 71472 71472 -0.016720166743880327 SSMKSLKESEE 11 Unmodified _SSMKSLKESEE_ 0 0 0 REV__ENSG00000125686|ENST00000300651|MED1 REV__ENSG00000125686|ENST00000300651|MED1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7977905273438 2 627.797743 1253.58093 NaN NaN NaN NaN NaN NaN NaN 95.778 1 95.41 94.91 95.91 -0.36814 0 0 0 0.9435 1 52313 52313 0 0 1 + 61364 19509 40975 41899 71473 71473 -0.035714992328394146 SSMVDNHTKQL 11 Unmodified _SSMVDNHTKQL_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.2966918945312 2 630.306069 1258.59759 NaN NaN NaN NaN NaN NaN NaN 68.644 1 68.644 68.144 69.144 0 0 0 0 0.92234 1 38259 38259 6.2058 0 1 61365 2865 40976 41900 71474 71474 -0.02136953556282606 SSNFRGGLGGG 11 Unmodified _SSNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7445678710938 2 504.746505 1007.47846 0.072949 3.6821E-05 -0.91806 -0.00046339 -0.84511 -0.00042657 504.7459680047253 23.605 0.34369 23.605 23.427 23.771 0 43 17 3 0 0 0 0.22582 1 12000 12000 30.703 14.554 1 2002200 + 61366 165 40977 41901 71475 71475 -0.024983593987712993 SSNFRGGLGGG 11 Unmodified _SSNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.74658203125 2 504.746505 1007.47846 -0.40988 -0.00020689 0.67844 0.00034244 0.26856 0.00013555 504.7466108429074 23.697 0.24746 23.709 23.542 23.789 0.012394 23 11 3 0 0 0 0.029988 1 12059 12059 55.235 35.978 1 7801900 + 61367 165 40977 41901 71476 71476 -0.024983593987712993 SSNFRGGLGGG 11 Unmodified _SSNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.7459106445312 2 504.746505 1007.47846 NaN NaN NaN NaN NaN NaN NaN 23.589 1 23.61 23.11 24.11 0.021185 0 0 0 0.34378 1 12153 12153 30.703 15.865 1 + 61368 165 40977 41901 71477 71477 -0.024983593987712993 SSNFRGGLGGG 11 Unmodified _SSNFRGGLGGG_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7470703125 2 504.746505 1007.47846 0.5404 0.00027277 -1.2301 -0.0006209 -0.68972 -0.00034813 504.7456801196647 26.65 0.24266 23.699 23.56 23.803 -2.9511 19 12 2 0 0 0 0.063019 1 14727 14727 48.073 22.052 1 4285100 + 61369 165 40977 41901 71478 71478 -0.024983593987712993 SSNIFWMHWDR 11 Unmodified _SSNIFWMHWDR_ 0 0 0 ENST00000372734.3_1_10:76074502-76153957:+|nuORF ENST00000372734.3_1_10:76074502-76153957:+|nuORF ENST00000372734.3_1_10:76074502-76153957:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.5592651367188 3 493.559311 1477.6561 0.3081 0.00015206 -0.54115 -0.00026709 -0.23306 -0.00011503 493.5591941474489 18.119 0.11475 18.126 18.068 18.183 0.0060463 8 6 2 0 0 0 0.71618 1 9182 9182 1.1098 0 1 1123300 61370 12388 40978 41902 71479 71479 -0.06361852191139405 SSNIFWMHWDR 11 Unmodified _SSNIFWMHWDR_ 0 0 0 ENST00000372734.3_1_10:76074502-76153957:+|nuORF ENST00000372734.3_1_10:76074502-76153957:+|nuORF ENST00000372734.3_1_10:76074502-76153957:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.5596923828125 3 493.559311 1477.6561 0.87223 0.0004305 -1.2546 -0.00061924 -0.38241 -0.00018874 493.5587619098591 18.954 0.31625 16.333 16.173 16.49 -2.6215 59 19 4 0 0 0 0.65108 2 9964 9964;10069 4.4062 1.9714 1 15660000 61371 12388 40978 41902 71480;71481 71480 -0.06361852191139405 SSNRLELRNYV 11 Unmodified _SSNRLELRNYV_ 0 0 0 REV__nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 REV__nc|ENSG00000168060|Q9UQQ1-5|NAALADL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9083557128906 3 450.908997 1349.70516 0.16977 7.6552E-05 -0.53655 -0.00024194 -0.36678 -0.00016538 450.90875961368283 31.788 0.15096 31.818 31.692 31.843 0.030106 16 6 3 0 0 0 0.59689 1 16648 16648 6.2344 0 1 2461100 + 61372 22284 40979 41903 71482 71482 0.044297593694636817 SSPELLHFLF 10 Unmodified _SSPELLHFLF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7611694335938 2 595.316232 1188.61791 0.36126 0.00021507 -0.87795 -0.00052266 -0.51668 -0.00030759 595.3160721107047 38.956 0.26529 38.956 38.811 39.077 0 27 11 3 0 0 0 0.23227 1 20905 20905 10.824 6.0679 1 4358200 61373 4289 40980 41904 71483 71483 0.031145851658493484 SSPFGTCQLRF 11 Unmodified _SSPFGTCQLRF_ 0 0 0 REV__ENST00000425295.1_1_1:202780424-202780943:+|nuORF REV__ENST00000425295.1_1_1:202780424-202780943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8014526367188 2 621.800423 1241.58629 0.5574 0.00034659 -0.8557 -0.00053207 -0.2983 -0.00018548 622.3013162929115 52.278 0.31416 51.844 51.709 52.023 -0.43367 39 15 4 0 0 0 0.33405 1 28250 28250 24.991 2.2547 1 2341900 + 61374 26890 40981 41905 71484 71484 -0.02483730859762545 SSPFGTCQLRF 11 Unmodified _SSPFGTCQLRF_ 0 0 0 REV__ENST00000425295.1_1_1:202780424-202780943:+|nuORF REV__ENST00000425295.1_1_1:202780424-202780943:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 621.800423 1241.58629 0.54075 0.00033624 -1.6485 -0.001025 -1.1077 -0.00068878 621.8003320371856 51.987 0.10653 51.928 51.854 51.961 -0.058918 0.042015 -0.00070734 NaN 24.991 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 958250 + 61375 26890 40981 41905 -0.02483730859762545 SSPHRQLPQE 10 Unmodified _SSPHRQLPQE_ 0 0 0 REV__ENSG00000069020|ENST00000403625|MAST4 REV__ENSG00000069020|ENST00000403625|MAST4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2070922851562 3 393.535271 1177.58398 0.0091893 3.6163E-06 1.4932 0.00058764 1.5024 0.00059126 393.53568942475283 33.919 0.17774 33.948 33.859 34.036 0.028931 10 7 2 0 0 0 0.2384 1 17860 17860 5.4027 0.35519 1 1613700 + 61376 17446 40982 41906 71485 71485 0.0022955672679927375 SSPLKKKKKRK 11 Unmodified _SSPLKKKKKRK_ 0 0 0 ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.4483032226562 2 664.448446 1326.88234 NaN NaN NaN NaN NaN NaN NaN 91.884 1 91.884 91.384 92.384 0 0 0 0 0.9435 1 50811 50811 0 0 1 61377 14669 40983 41907 71486 71486 0.2319725971024127 SSPLKKKKKRK 11 Unmodified _SSPLKKKKKRK_ 0 0 0 ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.4473876953125 2 664.448446 1326.88234 NaN NaN NaN NaN NaN NaN NaN 94.146 1 94.146 93.646 94.646 0 0 0 0 0.9435 1 52043 52043 0 0 1 61378 14669 40983 41907 71487 71487 0.2319725971024127 SSPLKKKKKRK 11 Unmodified _SSPLKKKKKRK_ 0 0 0 ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF ENST00000515726.1_1_4:124318844-124319012:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.4493408203125 2 664.448446 1326.88234 NaN NaN NaN NaN NaN NaN NaN 93.367 1 92.909 92.409 93.409 -0.4574 0 0 0 0.9435 1 51024 51024 0 0 1 61379 14669 40983 41907 71488 71488 0.2319725971024127 SSPQRLREKL 10 Unmodified _SSPQRLREKL_ 0 0 0 REV__nc|ENSG00000116922|Q9NX04-2|AIRIM REV__nc|ENSG00000116922|Q9NX04-2|AIRIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2383117675781 3 405.238566 1212.69387 -0.53627 -0.00021732 0.67418 0.0002732 0.13791 5.5887E-05 405.2387804596418 18.167 0.18921 18.181 18.075 18.264 0.013865 92 31 4 0 0 0 0.42143 1 9071 9071 13.519 4.7669 1 10390000 + 61380 29591 40984 41908 71489 71489 0.09602982065985088 SSPSDWPQER 10 Unmodified _SSPSDWPQER_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.264404296875 2 594.767634 1187.52072 0.2658 0.00015809 1.2607 0.00074981 1.5265 0.0009079 594.767867900177 56.699 1.2801 50.722 50.25 51.53 -5.9769 165 65 4 0 0 0 0.35903 2 36748 36475;36748 24.021 3.606 1 242930000 61381 2760 40985 41909 71490;71491 71491 -0.06554428781100796 SSPSYNWMSLY 11 Unmodified _SSPSYNWMSLY_ 0 0 0 REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.7900390625 2 667.789721 1333.56489 0.19925 0.00013306 -0.7185 -0.0004798 -0.51925 -0.00034675 667.7890045499803 53.011 0.22021 53.011 52.9 53.12 0 20 10 3 0 0 0 0.65846 1 29343 29343 8.1555 0.54658 1 2244200 + 61382 29214 40986 41910 71492 71492 -0.08855160679104301 SSPSYNWMSLY 11 Unmodified _SSPSYNWMSLY_ 0 0 0 REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.7909545898438 2 667.789721 1333.56489 0.48018 0.00032066 -0.081311 -5.4298E-05 0.39887 0.00026636 667.7899133658444 53.621 0.25408 53.169 53.026 53.28 -0.45173 31 12 3 0 0 0 0.58219 1 29002 29002 12.241 0.74595 1 3928900 + 61383 29214 40986 41910 71493 71493 -0.08855160679104301 SSPSYNWMSLY 11 Unmodified _SSPSYNWMSLY_ 0 0 0 REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.7901000976562 2 667.789721 1333.56489 0.32403 0.00021638 -1.5342 -0.0010245 -1.2102 -0.00080817 667.7892121755963 54.015 0.24035 53.548 53.427 53.667 -0.46664 32 11 4 0 0 0 0.5229 1 29249 29249 15.248 3.7538 1 4216200 + 61384 29214 40986 41910 71494 71494 -0.08855160679104301 SSPSYNWMSLY 11 Unmodified _SSPSYNWMSLY_ 0 0 0 REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF REV__ENST00000595753.5_1_19:16664089-16664293:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 667.789721 1333.56489 0.19925 0.00013306 -0.7185 -0.0004798 -0.51925 -0.00034675 667.7890045499803 53.011 0.22021 53.011 52.9 53.12 0 -0.079157 -0.00055124 NaN 12.241 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2244200 + 61385 29214 40986 41910 -0.08855160679104301 SSPTGILA 8 Unmodified _SSPTGILA_ 0 0 0 nc|ENSG00000187164|A0MZ66-7|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1 nc|ENSG00000187164|A0MZ66-7|SHTN1 nc|ENSG00000187164|A0MZ66-7|SHTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.2078552246094 2 373.208161 744.401769 -0.41797 -0.00015599 0.041857 1.5621E-05 -0.37611 -0.00014037 373.2081553387871 21.024 0.44032 21.024 20.744 21.184 0 120 76 2 0 0 0 0.67481 1 10553 10553 19.439 0 1 2208500 61386 9542 40987 41911 71495 71495 0.01934449052009768 SSPVDQKLI 9 Unmodified _SSPVDQKLI_ 0 0 0 REV__ENSG00000184445|ENST00000333479|KNTC1 REV__ENSG00000184445|ENST00000333479|KNTC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7801208496094 2 493.779482 985.544411 0.96081 0.00047443 -0.10255 -5.0638E-05 0.85825 0.00042379 493.77936887044007 70.446 0.3243 64.27 64.083 64.408 -6.1757 29 17 2 0 0 0 0.05447 1 45996 45996 43.858 0 1 18986000 + 61387 23420 40988 41912 71496 71496 0.05106036723384477 SSPVDQKLI 9 Unmodified _SSPVDQKLI_ 0 0 0 REV__ENSG00000184445|ENST00000333479|KNTC1 REV__ENSG00000184445|ENST00000333479|KNTC1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 493.779482 985.544411 0.96081 0.00047443 -0.10255 -5.0638E-05 0.85825 0.00042379 493.77936887044007 70.446 0.3243 64.27 64.083 64.408 -6.1757 0.019226 -0.00027373 NaN 43.858 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 18986000 + 61388 23420 40988 41912 0.05106036723384477 SSPVDRFRNWH 11 Unmodified _SSPVDRFRNWH_ 0 0 0 REV__nc|ENSG00000107742|Q92563-2|SPOCK2 REV__nc|ENSG00000107742|Q92563-2|SPOCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 700.84375 2 700.844542 1399.67453 0.30095 0.00021092 -1.0936 -0.00076648 -0.7927 -0.00055556 700.8438534004217 42.297 0.23677 42.288 42.144 42.381 -0.0088196 25 10 3 0 0 0 0.16515 1 22609 22609 34.932 26.777 1 14547000 + 61389 29559 40989 41913 71497 71497 -0.009319742249090268 SSPVDRFRNWH 11 Unmodified _SSPVDRFRNWH_ 0 0 0 REV__nc|ENSG00000107742|Q92563-2|SPOCK2 REV__nc|ENSG00000107742|Q92563-2|SPOCK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 700.844542 1399.67453 0.30095 0.00021092 -1.0936 -0.00076648 -0.7927 -0.00055556 700.8438534004217 42.297 0.23677 42.288 42.144 42.381 -0.0088196 0 0 NaN 34.932 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 14547000 + 61390 29559 40989 41913 -0.009319742249090268 SSPVFTSR 8 Unmodified _SSPVFTSR_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7295227050781 2 440.729792 879.445031 NaN NaN NaN NaN NaN NaN NaN 24.194 1 24.194 23.694 24.694 0 0 0 0 0.9559 1 12355 12355 9.3831 1.473 1 + 61391 199 40990 41914 71498 71498 0.0004863882929839747 SSPVFTSRSAA 11 Unmodified _SSPVFTSRSAA_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.286865234375 2 555.28292 1108.55129 -0.20141 -0.00011184 2.7618 0.0015336 2.5604 0.0014217 555.2851655980239 26.978 0.14443 26.978 26.889 27.033 0 12 6 2 0 0 0 0.37603 1 13882 13882 22.775 4.4019 1 1664400 + 61392 199 40991 41915 71499 71499 0.0013534960396555107 SSPYTQLPQCH 11 Unmodified _SSPYTQLPQCH_ 0 0 0 REV__ENSG00000115414|ENST00000354785|FN1 REV__ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7872314453125 2 630.787512 1259.56047 -0.35993 -0.00022704 -0.31695 -0.00019993 -0.67689 -0.00042697 630.7873739939248 25.389 0.3072 25.389 25.221 25.528 0 37 14 3 0 0 0 0.65846 1 12991 12991 8.1555 4.2111 1 1894300 + 61393 18977 40992 41916 71500 71500 -0.05892625102023885 SSQAEHLCLKL 11 Unmodified _SSQAEHLCLKL_ 0 0 0 ENST00000543562.1_1_11:69489970-69490117:-|nuORF ENST00000543562.1_1_11:69489970-69490117:-|nuORF ENST00000543562.1_1_11:69489970-69490117:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2170104980469 3 410.216662 1227.62816 0.90529 0.00037137 0.71147 0.00029186 1.6168 0.00066322 410.2169840782997 51.471 0.46677 45.822 45.605 46.071 -5.649 71 28 3 0 0 0 0.58219 2 32307 32307;32429 9.7643 2.6134 1 326140000 61394 15072 40993 41917 71501;71502 71501 0.02344824828765013 SSQCAVHHLY 10 Unmodified _SSQCAVHHLY_ 0 0 0 ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;nc|ENSG00000141376|Q9H6U6-6|BCAS3 ENSG00000141376|ENST00000407086|BCAS3 ENSG00000141376|ENST00000407086|BCAS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4884338378906 3 382.178319 1143.51313 -0.41748 -0.00015955 0.25786 9.8548E-05 -0.15962 -6.1005E-05 382.1783177320859 24.585 0.22783 24.585 24.469 24.697 0 29 13 3 0 0 0 0.23821 1 12522 12522 2.086 0 1 2563100 61395 5319 40994 41918 71503 71503 -0.052888595823560536 SSQEEIQGLIQ 11 Unmodified _SSQEEIQGLIQ_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3112182617188 2 616.311874 1230.6092 -0.41966 -0.00025864 0.94543 0.00058268 0.52577 0.00032404 616.3116721060725 27.999 0.36703 27.999 27.761 28.128 0 66 21 4 0 0 0 0.35681 2 14455 14356;14455 23.79 8.5413 1 33709000 61396 3067 40995 41919 71504;71505 71505 0.003115667387191934 SSQGNNYQGHG 11 Unmodified _SSQGNNYQGHG_ 0 0 0 ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7393798828125 2 574.739408 1147.46426 NaN NaN NaN NaN NaN NaN NaN 76.525 1 76.525 76.025 77.025 0 0 0 0 0.9435 1 42548 42548 0 0 1 61397 2549 40996 41920 71506 71506 -0.10357056617772287 SSQGQAPE 8 Unmodified _SSQGQAPE_ 0 0 0 REV__ENST00000465134.5_1_2:74650023-74652276:+|nuORF REV__ENST00000465134.5_1_2:74650023-74652276:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1795043945312 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 93.536 1 93.079 92.579 93.579 -0.4574 0 0 0 0.97444 1 51113 51113 0.69038 0 1 + 61398 27387 40997 41921 71507 71507 -0.06336803855469952 SSQHESSEILF 11 Unmodified _SSQHESSEILF_ 0 0 0 REV__ENST00000561077.1_1_15:59397440-59406659:+|nuORF REV__ENST00000561077.1_1_15:59397440-59406659:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.79150390625 2 632.296224 1262.5779 -0.069124 -4.3707E-05 -2.1779 -0.0013771 -2.247 -0.0014208 632.2949055720092 41.053 0.25052 40.75 40.659 40.909 -0.30304 17 11 2 0 0 0 0.28456 1 21758 21758 16.149 8.239 1 1440800 + 61399 28833 40998 41922 71508 71508 -0.042890062953802044 SSQNRPLSSL 10 Unmodified _SSQNRPLSSL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.78759765625 2 544.78837 1087.56219 -0.019686 -1.0725E-05 0.9705 0.00052872 0.95081 0.00051799 544.7881564755492 31.048 0.17834 31.048 30.974 31.152 0 12 8 2 0 0 0 0.14923 1 16168 16168 39.95 3.4435 1 1471400 + 61400 29057 40999 41923 71509 71509 0.021907519782416784 SSQNRPLSSL 10 Unmodified _SSQNRPLSSL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7886352539062 2 544.78837 1087.56219 0.11237 6.1218E-05 0.71583 0.00038998 0.8282 0.00045119 544.788346134327 31.067 0.21831 30.965 30.815 31.034 -0.10269 13 8 2 0 0 0 0.095098 1 16127 16127 47.749 3.9763 1 2266500 + 61401 29057 40999 41923 71510 71510 0.021907519782416784 SSQNRPLSSL 10 Unmodified _SSQNRPLSSL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.790283203125 2 544.78837 1087.56219 0.83058 0.00045249 0.12428 6.7708E-05 0.95486 0.0005202 544.7885328347311 35.072 0.3678 30.977 30.752 31.12 -4.0951 38 21 2 0 0 0 0.14923 1 20351 20351 39.95 7.164 1 27776000 + 61402 29057 40999 41923 71511 71511 0.021907519782416784 SSQNRPLSSL 10 Unmodified _SSQNRPLSSL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 544.78837 1087.56219 -0.019686 -1.0725E-05 0.9705 0.00052872 0.95081 0.00051799 544.7881564755492 31.048 0.17834 31.048 30.974 31.152 0 0.051876 0.00070739 NaN 47.749 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1471400 + 61403 29057 40999 41923 0.021907519782416784 SSQNRPLSSL 10 Unmodified _SSQNRPLSSL_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.78837 1087.56219 0.11237 6.1218E-05 0.71583 0.00038998 0.8282 0.00045119 544.788346134327 31.067 0.21831 30.965 30.815 31.034 -0.10269 -0.032063 0.00042991 NaN 47.749 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2266500 + 61404 29057 40999 41923 0.021907519782416784 SSQPDTQKLSP 11 Unmodified _SSQPDTQKLSP_ 0 0 0 REV__nc|ENSG00000228970|P0CB48|UBTFL6 REV__nc|ENSG00000228970|P0CB48|UBTFL6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2647705078125 2 594.298767 1186.58298 0.43161 0.0002565 2.2053 0.0013106 2.6369 0.0015671 594.3000325963632 49.461 0.18742 49.461 49.373 49.56 0 17 7 3 0 0 0 0.28456 1 27173 27173 11.495 0 1 2131800 + 61405 29955 41000 41924 71512 71512 -0.002847024327593317 SSQQSKYNEAL 11 Unmodified _SSQQSKYNEAL_ 0 0 0 REV__nc|ENSG00000012223|P02788-2|LTF REV__nc|ENSG00000012223|P02788-2|LTF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8686218261719 3 418.870208 1253.58879 NaN NaN NaN NaN NaN NaN NaN 21.667 1 21.681 21.181 22.181 0.013796 0 0 0 0.93893 1 11109 11109 1.3296 0 1 + 61406 17065 41001 41925 71513 71513 -0.02785603921074653 SSQSLSYTEE 10 Unmodified _SSQSLSYTEE_ 0 0 0 REV__nc|ENSG00000163535|Q562F6-2|SGO2 REV__nc|ENSG00000163535|Q562F6-2|SGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.746337890625 2 565.746033 1129.47751 1.4027 0.00079355 -1.74 -0.00098439 -0.33733 -0.00019084 565.7456882887336 54.032 0.47514 48.166 47.979 48.454 -5.8653 82 27 4 0 0 0 0.52888 1 34301 34301 14.838 3.7238 1 70779000 + 61407 21781 41002 41926 71514 71514 -0.08204663349033581 SSQTPSLNRD 10 Unmodified _SSQTPSLNRD_ 0 0 0 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7679443359375 2 552.767634 1103.52072 0.50399 0.00027859 0.42992 0.00023765 0.93392 0.00051624 552.7678993329125 46.661 1.8973 41.58 41.29 43.187 -5.0805 734 186 5 0 0 0 0.65282 1 28970 28970 8.1555 8.1555 1 7715199999.999999 61408 7039 41003 41927 71515 71515 -0.026904287811021277 SSRCGCKN 8 Unmodified _SSRCGCKN_ 0 0 0 ENSG00000145794|ENST00000503335|MEGF10;nc|ENSG00000145794|Q96KG7-2|MEGF10 ENSG00000145794|ENST00000503335|MEGF10 ENSG00000145794|ENST00000503335|MEGF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.359130859375 1 854.360732 853.353456 -0.37123 -0.00031716 -1.3672 -0.0011681 -1.7385 -0.0014853 854.3594303210808 103.32 0.076912 103.27 103.23 103.31 -0.047928 4 2 2 0 0 0 0.81107 1 57392 57392 0 0 1 12782000 61409 5726 41004 41928 71516 71516 -0.07908691131206069 SSREGKHK 8 Unmodified _SSREGKHK_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2300720214844 2 464.75159 927.488627 0.035035 1.6283E-05 3.4286 0.0015935 3.4637 0.0016097 464.7527976479639 25.756 0.1235 25.756 25.695 25.819 0 7 5 2 0 0 0 8.7369 1 13236 13236 4.756 0 1 484430 61410 9016 41005 41929 71517 71517 0.021982483264196162 SSRKEHVLC 9 Unmodified _SSRKEHVLC_ 0 0 0 nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.775634765625 2 529.774208 1057.53386 -0.51509 -0.00027288 1.5619 0.00082746 1.0468 0.00055458 529.7753066018033 36.533 0.23079 36.283 36.152 36.383 -0.2497 24 10 3 0 0 0 0.25681 1 19144 19144 19.257 0 1 8775200 61411 16355 41006 41930 71518 71518 0.007397307973178613 SSRKEHVLC 9 Unmodified _SSRKEHVLC_ 0 0 0 nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 529.774208 1057.53386 0.68462 0.00036269 1.5044 0.00079697 2.189 0.0011597 529.7748797620557 36.271 0.10321 36.271 36.207 36.311 0 0.0099493 -3.043E-05 NaN 19.257 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2669600 61412 16355 41006 41930 0.007397307973178613 SSRKEHVLC 9 Unmodified _SSRKEHVLC_ 0 0 0 nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF nc|ENSG00000166803|Q15004-2|PCLAF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.774208 1057.53386 -0.18488 -9.7946E-05 1.6031 0.00084931 1.4183 0.00075136 530.2766350327491 36.204 0.13274 36.229 36.117 36.25 0.024967 -0.031955 7.4246E-05 NaN 19.257 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1424300 61413 16355 41006 41930 0.007397307973178613 SSRLQLLLL 9 Unmodified _SSRLQLLLL_ 0 0 0 REV__ENST00000263851.8_2_8:79717179-79717230:-|nuORF REV__ENST00000263851.8_2_8:79717179-79717230:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8363037109375 2 521.834591 1041.65463 1.1468 0.00059845 1.0813 0.00056428 2.2281 0.0011627 521.8350984384579 70.992 0.30702 71.028 70.874 71.181 0.035515 35 13 3 0 0 0 0.10247 1 39058 39058 32.786 0 1 7069200 + 61414 25052 41007 41931 71519 71519 0.13546881782417586 SSRQDPSWS 9 Unmodified _SSRQDPSWS_ 0 0 0 ENST00000477617.5_1_1:153941017-153941116:+|nuORF ENST00000477617.5_1_1:153941017-153941116:+|nuORF ENST00000477617.5_1_1:153941017-153941116:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2357788085938 2 525.23597 1048.45739 NaN NaN NaN NaN NaN NaN NaN 18.127 1 18.141 17.641 18.641 0.013865 0 0 0 0.79771 1 9065 9065 6.2058 0.97511 1 61415 14000 41008 41932 71520 71520 -0.06490369498351356 SSRRSRILKWF 11 Unmodified _SSRRSRILKWF_ 0 0 0 REV__ENSG00000144867|ENST00000678299|SRPRB REV__ENSG00000144867|ENST00000678299|SRPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2798461914062 3 479.280877 1434.8208 0.20754 9.947E-05 -1.5925 -0.00076328 -1.385 -0.00066381 479.2803182610667 38.749 0.24171 38.76 38.618 38.86 0.011452 21 11 3 0 0 0 0.70147 1 20596 20596 4.1166 0.27072 1 3080200 + 61416 20744 41009 41933 71521 71521 0.12078328010966288 SSRTFYVQ 8 Unmodified _SSRTFYVQ_ 0 0 0 ENSG00000169499|ENST00000617275|PLEKHA2;ENST00000521382.1_1_8:38809812-38818359:+|nuORF ENSG00000169499|ENST00000617275|PLEKHA2 ENSG00000169499|ENST00000617275|PLEKHA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2486877441406 2 494.248349 986.482145 NaN NaN NaN NaN NaN NaN NaN 26.737 1 26.766 26.266 27.266 0.028664 0 0 0 0.95254 1 13878 13878 10.074 2.7847 1 61417 7878 41010 41934 71522 71522 -0.011636896249569872 SSRTYFPA 8 Unmodified _SSRTYFPA_ 0 0 0 REV__nc|ENSG00000117298|P42892-3|ECE1 REV__nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4503173828125 1 928.452308 927.445031 0.94044 0.00087315 -1.6468 -0.0015289 -0.70633 -0.00065579 928.4505734392671 59.752 0.74147 53.638 53.496 54.238 -6.1147 72 40 2 0 0 0 0.48669 1 38616 38616 36.044 1.9418 1 51418000 + 61418 19096 41011 41935 71523 71523 -0.02159361170720331 SSSAGPGLLK 10 Unmodified _SSSAGPGLLK_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7587585449219 2 458.758549 915.502546 0.019476 8.9346E-06 0.17393 7.979E-05 0.1934 8.8724E-05 458.75869302563217 29.013 0.23901 29.013 28.903 29.142 0 27 11 3 0 0 0 0.087043 1 14994 14994 49.554 11.379 1 4840200 + 61419 199 41012 41936 71524 71524 0.041414810348555875 SSSAGPGLLKA 11 Unmodified _SSSAGPGLLKA_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2442932128906 2 494.277106 986.53966 -0.52128 -0.00025766 -0.11591 -5.7293E-05 -0.63719 -0.00031495 494.27707334936883 34.557 0.27264 34.557 34.402 34.675 0 28 13 3 0 0 0 0.26799 1 18237 18237 24.991 11.085 1 2271600 + 61420 199 41013 41937 71525 71525 0.04585152580614249 SSSAGPGLLKA 11 Unmodified _SSSAGPGLLKA_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2763061523438 2 494.277106 986.53966 0.62675 0.00030979 -1.1866 -0.00058652 -0.55988 -0.00027673 494.27645984900175 38.88 0.33379 34.429 34.282 34.616 -4.4509 34 20 2 0 0 0 0.017923 1 22988 22988 59.368 1.6464 1 12395000 + 61421 199 41013 41937 71526 71526 0.04585152580614249 SSSCKGGR 8 Unmodified _SSSCKGGR_ 0 0 0 REV__nc|ENSG00000183145|P57055-2|RIPPLY3 REV__nc|ENSG00000183145|P57055-2|RIPPLY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 781.8649291992188 1 781.362112 780.354836 0.10626 8.3026E-05 0.48135 0.00037611 0.58761 0.00045913 781.3619880027869 68.876 0.17073 68.876 68.764 68.934 0 9 6 2 0 0 0 8.7369 1 38378 38378 0.69038 0 1 435190 + 61422 23325 41014 41938 71527 71527 -0.044127337707891456 SSSDSSSDSD 10 Unmodified _SSSDSSSDSD_ 0 0 0 ENSG00000130382|ENST00000252674|MLLT1;ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4 ENSG00000130382|ENST00000252674|MLLT1;ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.322021484375 1 973.322869 972.315593 -0.52704 -0.00051298 0.10537 0.00010255 -0.42167 -0.00041042 973.3217122565886 14.718 0.018673 14.718 14.708 14.727 0 6 5 2 0 0 0 0.72607 1 7027 7027 0 0 1 257290 61423 5378;4209 41015 41939 71528 71528 -0.17167252101967279 SSSESDSSCS 10 Unmodified _SSSESDSSCS_ 0 0 0 REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1 REV__nc|ENSG00000180592|Q1XH10-2|SKIDA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.1639404296875 2 488.164019 974.313484 NaN NaN NaN NaN NaN NaN NaN 14.04 1 14.047 13.547 14.547 0.0073986 0 0 0 1.0061 1 6945 6945 0 0 1 + 61424 23157 41016 41940 71529 71529 -0.17470004111441995 SSSFIVSRRD 10 Unmodified _SSSFIVSRRD_ 0 0 0 REV__ENSG00000112182|ENST00000257749|BACH2 REV__ENSG00000112182|ENST00000257749|BACH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2037963867188 3 385.203522 1152.58874 0.36071 0.00013895 -0.0096575 -3.7201E-06 0.35105 0.00013523 385.2035708536336 53.975 0.16077 53.508 53.407 53.567 -0.46664 14 7 2 0 0 0 0.69917 1 29253 29253 1.4551 0 1 1987000 + 61425 18793 41017 41941 71530 71530 0.018544408695561287 SSSGGSYE 8 Unmodified _SSSGGSYE_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;ENST00000502925.1_1_4:48549577-48553572:-|nuORF ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1788635253906 2 387.15104 772.287527 NaN NaN NaN NaN NaN NaN NaN 15.492 1 15.492 14.992 15.992 0 0 0 0 0.97444 1 7467 7467 0.69038 0 1 61426 1160 41018 41942 71531 71531 -0.10772485500763196 SSSGYAAFYS 10 Unmodified _SSSGYAAFYS_ 0 0 0 REV__nc|nan|Q8N6N3-3|C1orf52 REV__nc|nan|Q8N6N3-3|C1orf52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2232666015625 2 520.221997 1038.42944 1.1477 0.00059706 1.1769 0.00061224 2.3246 0.0012093 520.2224643893483 32.41 0.3572 28.553 28.337 28.694 -3.8562 42 20 3 0 0 0 0.54684 1 18426 18426 13.906 0 1 13745000 + 61427 21672 41019 41943 71532 71532 -0.08823692478426892 SSSIPHILR 9 Unmodified _SSSIPHILR_ 0 0 0 REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 505.292236328125 2 505.293091 1008.57163 NaN NaN NaN NaN NaN NaN NaN 97.779 1 91.604 91.104 92.104 -6.1757 0 0 0 0.39043 1 64807 64807 20.454 7.9221 1 + 61428 26172 41020 41944 71533 71533 0.0676856505442629 SSSKRNRR 8 Unmodified _SSSKRNRR_ 0 0 0 nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM nc|ENSG00000091129|Q92823-3|NRCAM;REV__ENSG00000137766|ENST00000260323|UNC13C nc|ENSG00000091129|Q92823-3|NRCAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7807312011719 2 495.781213 989.547873 NaN NaN NaN NaN NaN NaN NaN 93.726 1 93.289 92.789 93.789 -0.4363 0 0 0 0.97444 1 51213 51213 0 0 1 61429 1581;20264 41021 41945 71534 71534 0.0526814434060725 SSSLFKNIKY 10 Unmodified _SSSLFKNIKY_ 0 0 0 REV__ENSG00000112893|ENST00000261483|MAN2A1 REV__ENSG00000112893|ENST00000261483|MAN2A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.26416015625 2 593.826963 1185.63937 -0.708 -0.00042043 1.1623 0.00069023 0.45434 0.0002698 594.3287623449173 48.649 0.11625 48.649 48.579 48.695 0 8 5 2 0 0 0 0.23566 1 26716 26716 7.2892 0.56607 1 1003200 + 61430 18842 41022 41946 71535 71535 0.05397970194553636 SSSLQGSAVTL 11 Unmodified _SSSLQGSAVTL_ 0 0 0 ENSG00000079335|ENST00000336454|CDC14A;nc|ENSG00000079335|Q9UNH5-5|CDC14A;nc|ENSG00000079335|Q9UNH5-2|CDC14A ENSG00000079335|ENST00000336454|CDC14A ENSG00000079335|ENST00000336454|CDC14A MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5183410644531 3 350.520628 1048.54005 0.88615 0.00031061 1.5396 0.00053967 2.4258 0.00085029 350.52101145849883 26.198 0.5035 23.247 22.955 23.459 -2.9511 73 29 3 0 0 0 0.33405 1 14288 14288 15.538 2.0198 1 61722000 61431 1273 41023 41947 71536 71536 0.017725275098200655 SSSLSKHK 8 Unmodified _SSSLSKHK_ 0 0 0 ENSG00000196110|ENST00000591998|ZNF699 ENSG00000196110|ENST00000591998|ZNF699 ENSG00000196110|ENST00000591998|ZNF699 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2418518066406 2 437.243067 872.47158 NaN NaN NaN NaN NaN NaN NaN 27.7 1 27.73 27.23 28.23 0.029259 0 0 0 0.97444 1 14402 14402 4.3292 2.0265 1 61432 9761 41024 41948 71537 71537 0.03024327720618203 SSSLVKKKKK 10 Unmodified _SSSLVKKKKK_ 0 0 0 REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF REV__ENST00000282964.5_1_21:21112145-21112373:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8744506835938 2 566.874248 1131.73394 -0.37843 -0.00021452 0.21683 0.00012292 -0.16159 -9.1603E-05 566.8743031050936 103.35 0.21638 103.3 103.19 103.4 -0.047928 16 8 2 0 0 0 0.72607 1 57384 57384 0 0 1 1542800 + 61433 25205 41025 41949 71538 71538 0.17334528736569155 SSSPMATTAAA 11 Unmodified _SSSPMATTAAA_ 0 0 0 nc|ENSG00000168066|Q15637-6|SF1 nc|ENSG00000168066|Q15637-6|SF1 nc|ENSG00000168066|Q15637-6|SF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7633361816406 2 497.729132 993.44371 NaN NaN NaN NaN NaN NaN NaN 5.513 1 5.4355 4.9355 5.9355 -0.07749 0 0 0 0.9435 1 2720 2720 0 0 1 61434 16366 41026 41950 71539 71539 -0.05327363321816847 SSSPRTLLLWT 11 Unmodified _SSSPRTLLLWT_ 0 0 0 REV__ENST00000223029.7_1_7:6063275-6063332:+|nuORF REV__ENST00000223029.7_1_7:6063275-6063332:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.849853515625 2 630.85097 1259.68739 -0.56592 -0.00035701 0.14375 9.0683E-05 -0.42217 -0.00026633 630.8512469716894 61.263 0.18368 60.774 60.674 60.858 -0.48932 11 8 2 0 0 0 0.5229 1 33383 33383 15.248 0 1 1522400 + 61435 24768 41027 41951 71540 71540 0.06793044114624536 SSSQLLCL 8 Unmodified _SSSQLLCL_ 0 0 0 ENST00000374057.3_1_9:117267080-117267632:-|nuORF ENST00000374057.3_1_9:117267080-117267632:-|nuORF ENST00000374057.3_1_9:117267080-117267632:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 850.4335327148438 1 850.43388 849.426604 -0.091907 -7.8161E-05 0.25501 0.00021687 0.1631 0.0001387 850.4339400519918 90.872 0.45056 90.377 90.187 90.637 -0.49457 85 31 3 0 0 0 0.44629 1 49691 49691 39.957 39.957 1 8807700 61436 12433 41028 41952 71541 71541 -0.004132391369353172 SSSRAQWFMP 10 Unmodified _SSSRAQWFMP_ 0 0 0 ENST00000342572.12_1_17:80400840-80401323:-|nuORF ENST00000342572.12_1_17:80400840-80401323:-|nuORF ENST00000342572.12_1_17:80400840-80401323:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.522705078125 3 399.522086 1195.54443 NaN NaN NaN NaN NaN NaN NaN 17.615 1 15.028 14.528 15.528 -2.5866 0 0 0 0.7417 1 9227 9227 8.9762 1.4992 1 61437 11986 41029 41953 71542 71542 -0.04552286548278062 SSSRCTSCAT 10 Unmodified _SSSRCTSCAT_ 0 0 0 REV__ENST00000371712.3_1_9:139327509-139329265:-|nuORF REV__ENST00000371712.3_1_9:139327509-139329265:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7024536132812 2 501.702591 1001.39063 NaN NaN NaN NaN NaN NaN NaN 2.3778 1 2.3057 1.8057 2.8057 -0.072029 0 0 0 1.0061 1 1181 1181 0 0 1 + 61438 26090 41030 41954 71543 71543 -0.110010643761143 SSSSDCSE 8 Unmodified _SSSSDCSE_ 0 0 0 ENST00000494268.1_1_X:11778342-11782058:+|nuORF;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3 ENST00000494268.1_1_X:11778342-11782058:+|nuORF ENST00000494268.1_1_X:11778342-11782058:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.2593994140625 1 801.256704 800.249427 1.8804 0.0015067 -0.88019 -0.00070526 1.0003 0.00080146 801.2556163011645 108.97 0.3625 102.79 102.53 102.9 -6.1757 74 56 2 0 0 0 0.81107 2 72712 72712;72835 0 0 1 2960000 61439 305 41031 41955 71544;71545 71544 -0.15868739477730287 SSSSDTSECDT 11 Unmodified _SSSSDTSECDT_ 0 0 0 ENST00000493710.1_1_7:128106625-128109222:+|nuORF ENST00000493710.1_1_7:128106625-128109222:+|nuORF ENST00000493710.1_1_7:128106625-128109222:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.6945190429688 2 559.69314 1117.37173 NaN NaN NaN NaN NaN NaN NaN 109.66 1 103.48 102.98 103.98 -6.1757 0 0 0 0.9435 1 73221 73221 0 0 1 61440 14320 41032 41956 71546 71546 -0.1822636725682969 SSSSMDPD 8 Unmodified _SSSSMDPD_ 0 0 0 ENSG00000215131|ENST00000437192|C16orf90 ENSG00000215131|ENST00000437192|C16orf90 ENSG00000215131|ENST00000437192|C16orf90 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1492309570312 2 413.150183 824.285813 NaN NaN NaN NaN NaN NaN NaN 64.365 1 64.365 63.865 64.865 0 0 0 0 0.97444 1 35895 35895 0.69038 0 1 61441 10521 41033 41957 71547 71547 -0.13335862581016045 SSSSMSRK 8 Unmodified _SSSSMSRK_ 0 0 0 REV__ENST00000593816.1_1_19:41078061-41078287:+|nuORF REV__ENST00000593816.1_1_19:41078061-41078287:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 435.2123107910156 2 435.210909 868.407265 NaN NaN NaN NaN NaN NaN NaN 105.65 1 99.477 98.977 99.977 -6.1757 0 0 0 0.97444 1 70777 70777 2.5775 1.7838 1 + 61442 26384 41034 41958 71548 71548 -0.032201954278320954 SSSSNGYC 8 Unmodified _SSSSNGYC_ 0 0 0 ENST00000373998.5_1_X:70474702-70474819:-|nuORF ENST00000373998.5_1_X:70474702-70474819:-|nuORF ENST00000373998.5_1_X:70474702-70474819:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.281005859375 1 804.282859 803.275583 -0.0034388 -2.7657E-06 -1.049 -0.00084367 -1.0524 -0.00084644 804.280915731986 102.39 0.27749 102.39 102.29 102.57 0 36 13 3 0 0 0 0.81107 1 56557 56557 0 0 1 17440000 61443 12430 41035 41959 71549 71549 -0.13392425515598916 SSSSSSSEQNE 11 Unmodified _SSSSSSSEQNE_ 0 0 0 REV__nc|ENSG00000116690|Q92954-5|PRG4 REV__nc|ENSG00000116690|Q92954-5|PRG4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.4954528808594 3 376.814428 1127.42145 0.6856 0.00025834 -3.9929 -0.0015046 -3.3073 -0.0012462 377.14646453276964 62.438 0.12495 61.95 61.872 61.997 -0.48764 7 5 2 0 0 0 0.29699 1 33993 33993 11.065 3.4563 1 817660 + 61444 19058 41036 41960 71550 71550 -0.13715916256523997 SSSTGTQESSI 11 Unmodified _SSSTGTQESSI_ 0 0 0 REV__ENSG00000166004|ENST00000325212|CEP295 REV__ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.83154296875 3 361.83153 1082.47276 1.2074 0.00043688 -0.26185 -9.4745E-05 0.94558 0.00034214 361.8313510518577 26.833 0.39664 23.797 23.589 23.985 -3.0365 46 20 3 0 0 0 0.69316 1 14922 14922 2.2527 0 1 18772000 + 61445 22075 41037 41961 71551 71551 -0.06517547491807818 SSSYDDDDDEL 11 Unmodified _SSSYDDDDDEL_ 0 0 0 REV__ENSG00000115524|ENST00000335508|SF3B1 REV__ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.22607421875 2 630.722952 1259.43135 -0.56554 -0.0003567 -0.81038 -0.00051113 -1.3759 -0.00086783 630.7226488383087 34.13 0.40001 34.13 33.926 34.326 0 87 20 6 0 0 0 0.71036 1 17960 17960 3.2813 0 1 98467000 + 61446 18989 41038 41962 71552 71552 -0.18798773041794448 SSSYGQQSSF 10 Unmodified _SSSYGQQSSF_ 0 0 0 ENST00000479135.5_1_22:29673993-29684776:+|nuORF;ENST00000483415.5_1_22:29664325-29684776:+|nuORF;nc|ENSG00000182944|Q01844-4|EWSR1;nc|ENSG00000182944|Q01844-6|EWSR1;nc|ENSG00000182944|Q01844-3|EWSR1;ENSG00000182944|ENST00000397938|EWSR1;nc|ENSG00000182944|Q01844-5|EWSR1 ENST00000479135.5_1_22:29673993-29684776:+|nuORF ENST00000479135.5_1_22:29673993-29684776:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2280883789062 2 539.22781 1076.44107 -0.16238 -8.7562E-05 -0.28732 -0.00015493 -0.4497 -0.00024249 539.2277584341592 39.266 0.15535 38.979 38.925 39.08 -0.28687 11 7 2 0 0 0 0.60623 1 20721 20721 10.824 0 1 2171200 61447 9103 41039 41963 71553 71553 -0.0940949545508829 SSSYGSGRRF 10 Unmodified _SSSYGSGRRF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000509706.1_1_8:83203861-83203996:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5122985839844 3 368.512467 1102.51557 -0.5682 -0.00020939 0.35411 0.00013049 -0.21409 -7.8896E-05 368.51259770750835 17.48 0.083179 17.493 17.444 17.527 0.013866 31 18 2 0 0 0 0.44171 1 8686 8686 12.856 4.7004 1 957870 61448 74 41040 41964 71554 71554 -0.031586878530333706 SSSYGSGRRF 10 Unmodified _SSSYGSGRRF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000509706.1_1_8:83203861-83203996:-|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5128173828125 3 368.512467 1102.51557 1.1797 0.00043473 -0.45136 -0.00016633 0.72832 0.00026839 368.5124183750104 17.969 0.18294 15.382 15.256 15.439 -2.5866 20 13 2 0 0 0 0.44171 1 9431 9431 17.049 7.8048 1 2382700 61449 74 41040 41964 71555 71555 -0.031586878530333706 SSTFWFVYV 9 Unmodified _SSTFWFVYV_ 0 0 0 ENST00000495810.1_1_7:26235422-26236427:-|nuORF ENST00000495810.1_1_7:26235422-26236427:-|nuORF ENST00000495810.1_1_7:26235422-26236427:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2783813476562 2 568.276575 1134.5386 1.5451 0.00087805 1.1924 0.0006776 2.7375 0.0015557 568.2776546801837 102.88 0.12864 96.708 96.67 96.798 -6.1757 46 36 2 0 0 0 0.41742 1 69016 69016 11.64 4.3511 1 4410200 61450 14359 41041 41965 71556 71556 -0.023290617882821607 SSTWAEALY 9 Unmodified _SSTWAEALY_ 0 0 0 REV__chr6:31530926-31531110|48|111.6|0.0|23.41|-|1|DDX39B,None|1 REV__chr6:31530926-31531110|48|111.6|0.0|23.41|-|1|DDX39B,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2415161132812 2 514.24019 1026.46583 0.85306 0.00043868 0.43185 0.00022207 1.2849 0.00066075 514.2405152155113 69.245 0.45911 63.07 62.822 63.281 -6.1757 43 25 2 0 0 0 0.2001 1 45234 45234 23.148 2.6948 1 42665000 + 61451 16812 41042 41966 71557 71557 -0.046348155816986036 SSVENPEQDLF 11 Unmodified _SSVENPEQDLF_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.1940612792969 3 422.19458 1263.56191 1.2865 0.00054317 -0.74674 -0.00031527 0.53979 0.00022789 422.19393617795856 92.328 1.0112 86.152 85.371 86.382 -6.1757 137 59 4 0 0 0 0.42108 2 60828 60828;60948 12.228 0 1 19330000 61452 4022 41043 41967 71558;71559 71558 -0.059327125322852226 SSVLAISGIL 10 Unmodified _SSVLAISGIL_ 0 0 0 ENSG00000214787|ENST00000651255|MS4A4E ENSG00000214787|ENST00000651255|MS4A4E ENSG00000214787|ENST00000651255|MS4A4E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.292236328125 2 480.292225 958.569897 0.40659 0.00019528 1.1577 0.00055604 1.5643 0.00075132 480.29283274298706 59.037 0.21184 58.546 58.432 58.644 -0.49079 18 9 2 0 0 0 0.16524 1 32109 32109 37.974 7.3375 1 1829900 61453 10509 41044 41968 71560 71560 0.08895511245816579 SSVLIKAVF 9 Unmodified _SSVLIKAVF_ 0 0 0 REV__ENST00000610272.1_1_1:179850989-179851172:-|nuORF REV__ENST00000610272.1_1_1:179850989-179851172:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 482.2965393066406 2 482.29731 962.580068 NaN NaN NaN NaN NaN NaN NaN 106.38 1 100.21 99.707 100.71 -6.1757 0 0 0 0.84737 1 71212 71212 1.8442 1.1539 1 + 61454 29337 41045 41969 71561 71561 0.09728118971031563 SSVLPKAA 8 Unmodified _SSVLPKAA_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.73193359375 2 386.731803 771.449054 NaN NaN NaN NaN NaN NaN NaN 57.666 1 57.666 57.166 58.166 0 0 0 0 0.97444 1 32092 32092 0.69038 0 1 61455 16181 41046 41970 71562 71562 0.054187283229907734 SSVRYAQGVN 10 Unmodified _SSVRYAQGVN_ 0 0 0 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7758178710938 2 540.775262 1079.53597 0.74724 0.00040409 0.76592 0.00041419 1.5132 0.00081828 540.775653246496 39.156 0.39119 34.705 34.523 34.914 -4.4509 36 24 2 0 0 0 0.29752 1 23248 23248 27.629 5.8822 1 11846000 61456 755 41047 41971 71563 71563 -0.000615171932395242 SSVTRSSF 8 Unmodified _SSVTRSSF_ 0 0 0 REV__ENST00000540710.5_1_12:6861487-6861860:-|nuORF REV__ENST00000540710.5_1_12:6861487-6861860:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7187194824219 2 435.719424 869.424296 -0.28574 -0.0001245 -0.81628 -0.00035567 -1.102 -0.00048017 435.71911316892965 25.11 0.23685 25.11 25.003 25.239 0 30 14 4 0 0 0 0.66338 1 12919 12919 20.454 0 1 1965200 + 61457 28585 41048 41972 71564 71564 -0.015639515503721668 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.550048828125 3 369.550082 1105.62842 0.28998 0.00010716 -0.18979 -7.0138E-05 0.10019 3.7023E-05 369.54997172920514 54.044 0.33966 53.577 53.407 53.746 -0.46664 55 16 4 0 0 0 0.5029 1 29330 29330 4.5289 0 1 79409000 + 61458 27420 41049 41973 71565 71565 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8222045898438 2 553.821484 1105.62842 0.89338 0.00049477 0.95546 0.00052916 1.8488 0.0010239 553.821763418877 74.167 0.31265 73.691 73.504 73.817 -0.47588 24 12 3 0 0 0 0.12424 1 40592 40592 30.637 4.3684 1 1625400 + 61459 27420 41049 41973 71566 71566 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8215942382812 2 553.821484 1105.62842 0.39872 0.00022082 0.064877 3.593E-05 0.46359 0.00025675 553.8213892548298 73.689 0.61209 73.733 73.292 73.904 0.043983 80 27 4 0 0 0 0.07916 2 40605 40504;40605 37.974 11.706 1 68729000 + 61460 27420 41049 41973 71567;71568 71568 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.28662109375 2 553.821484 1105.62842 -0.20675 -0.0001145 -2.9008 -0.0016065 -3.1076 -0.001721 553.8194843244864 53.597 0.089771 53.533 53.463 53.552 -0.063423 6 4 2 0 0 0 0.17718 1 29062 29062 20.454 0 1 3454200 + 61461 27420 41049 41973 71569 71569 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5507507324219 3 369.550082 1105.62842 1.6644 0.00061508 -0.33043 -0.00012211 1.334 0.00049297 369.54986115282657 59.31 0.54113 53.235 52.973 53.514 -6.0745 77 29 4 0 0 0 0.41742 1 37921 37921 7.609 0.50723 1 130880000 + 61462 27420 41049 41973 71570 71570 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5503234863281 3 369.550082 1105.62842 1.5551 0.00057468 -0.19114 -7.0636E-05 1.3639 0.00050404 369.54996771755793 80.293 1.388 74.118 73.073 74.462 -6.1757 282 81 4 0 0 0 0.41742 1 52178 52178 7.609 2.7119 1 438630000 + 61463 27420 41049 41973 71571 71571 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.822509765625 2 553.821484 1105.62842 1.2951 0.00071726 0.54507 0.00030187 1.8402 0.0010191 553.8218187776329 90.849 0.82887 84.673 84.127 84.956 -6.1757 114 47 3 0 0 0 0.16226 3 60020 59893;60020;60149 26.884 4.1474 1 83170000 + 61464 27420 41049 41973 71572;71573;71574 71573 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 553.821484 1105.62842 0.89338 0.00049477 0.95546 0.00052916 1.8488 0.0010239 553.821763418877 74.167 0.31265 73.691 73.504 73.817 -0.47588 -0.021026 0.00086089 NaN 37.974 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1625400 + 61465 27420 41049 41973 0.07982612610931028 SSVWLLVRF 9 Unmodified _SSVWLLVRF_ 0 0 0 REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF REV__ENST00000466933.1_1_20:60758097-60768815:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.821484 1105.62842 0.39872 0.00022082 0.064877 3.593E-05 0.46359 0.00025675 553.8213892548298 73.689 0.61209 73.733 73.292 73.904 0.043983 0.021026 -0.00012556 NaN 37.974 80 27 4 NaN NaN NaN NaN 0 NaN NaN 0 68729000 + 61466 27420 41049 41973 0.07982612610931028 SSWDYSFYWIW 11 Unmodified _SSWDYSFYWIW_ 0 0 0 nc|ENSG00000169126|Q5T2S8-2|ODAD2 nc|ENSG00000169126|Q5T2S8-2|ODAD2 nc|ENSG00000169126|Q5T2S8-2|ODAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.8917236328125 3 513.890832 1538.65067 0.093916 4.8262E-05 0.67875 0.0003488 0.77266 0.00039706 513.891445772372 26.188 0.47766 23.237 23.003 23.481 -2.9511 79 27 4 0 0 0 0.74046 1 14431 14431 0.45452 0.35968 1 45289000 61467 16373 41050 41974 71575 71575 -0.09711252501961098 SSWTFHDF 8 Unmodified _SSWTFHDF_ 0 0 0 REV__ENST00000555056.1_1_14:94770757-94780257:-|nuORF REV__ENST00000555056.1_1_14:94770757-94780257:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7199096679688 2 513.719424 1025.4243 0.23599 0.00012123 0.98296 0.00050496 1.2189 0.0006262 513.7199064132495 59.449 0.31786 58.958 58.792 59.11 -0.49079 24 14 2 0 0 0 0.80676 1 32406 32406 2.5775 0 1 2697700 + 61468 22446 41051 41975 71576 71576 -0.08739951550387559 SSYAEMEV 8 Unmodified _SSYAEMEV_ 0 0 0 nc|ENSG00000076555|O00763-3|ACACB;ENSG00000076555|ENST00000338432|ACACB;nc|ENSG00000076555|O00763-2|ACACB nc|ENSG00000076555|O00763-3|ACACB nc|ENSG00000076555|O00763-3|ACACB MSMS AL20221201_MKP_PDAC_01 4 458.1929321289062 2 458.191851 914.369149 NaN NaN NaN NaN NaN NaN NaN 50.592 1 45.053 44.553 45.553 -5.5391 0 0 0 0.95973 1 31760 31760 8.5933 0 1 61469 1188 41052 41976 71577 71577 -0.09146126133157395 SSYANRRP 8 Unmodified _SSYANRRP_ 0 0 0 ENSG00000081051|ENST00000395792|AFP ENSG00000081051|ENST00000395792|AFP ENSG00000081051|ENST00000395792|AFP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.7430725097656 2 475.743765 949.472977 NaN NaN NaN NaN NaN NaN NaN 21.214 1 21.227 20.727 21.727 0.013796 0 0 0 0.95607 1 10851 10851 9.3474 0 1 61470 1315 41053 41977 71578 71578 -0.003780381906267394 SSYPVEFLPS 10 Unmodified _SSYPVEFLPS_ 0 0 0 nc|ENSG00000176160|Q4G112-2|HSF5;ENSG00000176160|ENST00000323777|HSF5 nc|ENSG00000176160|Q4G112-2|HSF5 nc|ENSG00000176160|Q4G112-2|HSF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.27685546875 2 563.276772 1124.53899 0.91271 0.00051411 -0.50915 -0.00028679 0.40356 0.00022732 563.2763621880404 75.366 0.65218 74.888 74.582 75.235 -0.47714 134 33 5 0 0 0 0.33553 1 41238 41238 25.399 6.1423 1 118720000 61471 8571 41054 41978 71579 71579 -0.01829686859082358 SSYQHPVGF 9 Unmodified _SSYQHPVGF_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.5968933105469 2 511.240524 1020.46649 0.07753 3.9637E-05 -0.36176 -0.00018495 -0.28423 -0.00014531 511.2402726620128 58.299 0.24273 57.808 57.679 57.921 -0.49079 18 11 2 0 0 0 0.18521 1 31730 31730 16.942 1.0951 1 1647100 + 61472 24019 41055 41979 71580 71580 -0.04291976141996656 SSYQPHSYPSG 11 Unmodified _SSYQPHSYPSG_ 0 0 0 REV__nc|ENSG00000196092|Q02548-8|PAX5 REV__nc|ENSG00000196092|Q02548-8|PAX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.2626342773438 2 605.262185 1208.50982 -0.044615 -2.7004E-05 0.81507 0.00049333 0.77045 0.00046633 605.2626755415075 54.185 0.31852 54.118 53.962 54.28 -0.066936 45 15 4 0 0 0 0.50515 1 29396 29396 16.149 1.3108 1 12339000 + 61473 23786 41056 41980 71581 71581 -0.08609831155376924 SSYSFFMDL 9 Unmodified _SSYSFFMDL_ 0 0 0 ENST00000420497.6_1_2:214161797-214167284:+|nuORF ENST00000420497.6_1_2:214161797-214167284:+|nuORF ENST00000420497.6_1_2:214161797-214167284:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.735595703125 2 548.736425 1095.4583 -0.29696 -0.00016295 -0.27313 -0.00014988 -0.57009 -0.00031283 548.7364914078349 17.857 0.83478 17.857 17.393 18.228 0 289 128 3 0 0 0 0.54444 1 8626 8626 4.756 0.42677 1 3519900 61474 13098 41057 41981 71582 71582 -0.08561291173646168 STAACLVYQL 10 Unmodified _STAACLVYQL_ 0 0 0 REV__ENSG00000115112|ENST00000263707|TFCP2L1 REV__ENSG00000115112|ENST00000263707|TFCP2L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.2525024414062 2 534.773342 1067.53213 0.20279 0.00010845 -1.8402 -0.00098412 -1.6375 -0.00087567 534.7721434953274 76.833 0.33002 70.658 70.45 70.78 -6.1757 23 16 2 0 0 0 0.18632 1 50198 50198 25.399 4.9457 1 12050000 + 61475 18952 41058 41982 71583 71583 0.0010667698868473963 STAFIRVVF 9 Unmodified _STAFIRVVF_ 0 0 0 REV__nc|ENSG00000005810|O75592-2|MYCBP2 REV__nc|ENSG00000005810|O75592-2|MYCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.300537109375 2 520.300384 1038.58622 1.261 0.00065611 0.38163 0.00019856 1.6426 0.00085467 520.300075692523 89.415 1.7004 83.239 82.373 84.074 -6.1757 366 95 5 0 0 0 0.16226 1 59313 59313 26.884 0.61551 1 567260000 + 61476 16974 41059 41983 71584 71584 0.06846637202579586 STAKKVYSF 9 Unmodified _STAKKVYSF_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7822875976562 2 515.782025 1029.5495 0.295 0.00015215 -4.3988 -0.0022688 -4.1038 -0.0021167 515.7817868336167 53.186 0.30435 52.734 52.574 52.878 -0.45173 30 15 3 0 0 0 0.070838 1 28732 28732 39.957 5.8549 1 6508100 61477 1648 41060 41984 71585 71585 0.035903405860153725 STARDYYTF 9 Unmodified _STARDYYTF_ 0 0 0 ENSG00000106052|ENST00000396319|TAX1BP1;nc|ENSG00000106052|Q86VP1-2|TAX1BP1;ENST00000490455.1_1_7:27788143-27797760:+|nuORF ENSG00000106052|ENST00000396319|TAX1BP1 ENSG00000106052|ENST00000396319|TAX1BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2571411132812 2 562.256371 1122.49819 0.046275 2.6018E-05 0.27049 0.00015208 0.31676 0.0001781 562.2565524820797 41.901 0.25987 41.901 41.751 42.011 0 36 13 3 0 0 0 0.0094097 1 22624 22624 82.529 48.128 1 8783700 61478 2395 41061 41985 71586 71586 -0.05816028178742272 STASEWISF 9 Unmodified _STASEWISF_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2392578125 2 514.24019 1026.46583 0.18767 9.6506E-05 -0.22812 -0.00011731 -0.040456 -2.0804E-05 514.239963539292 61.673 0.5403 61.673 61.411 61.951 0 79 24 4 0 0 0 0.39863 1 34284 34284 12.532 0.89125 1 17493000 61479 665 41062 41986 71587 71587 -0.046348155816986036 STASYLSSL 9 Unmodified _STASYLSSL_ 0 0 0 ENSG00000101349|ENST00000353224|PAK5 ENSG00000101349|ENST00000353224|PAK5 ENSG00000101349|ENST00000353224|PAK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7347106933594 2 464.73474 927.454927 0.93005 0.00043223 -0.5657 -0.0002629 0.36435 0.00016933 464.734411082314 49.82 0.33833 49.82 49.671 50.009 0 52 15 4 0 0 0 0.042911 1 27389 27389 48.346 6.2513 1 59863000 61480 1952 41063 41987 71588 71588 -0.01170217955973385 STDDDDKEEY 10 Unmodified _STDDDDKEEY_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.1549072265625 3 406.15445 1215.44152 -0.7243 -0.00029418 1.2863 0.00052243 0.56198 0.00022825 406.1551041084066 33.092 0.35827 33.092 32.948 33.306 0 41 17 3 0 0 0 0.71123 1 17407 17407 0.69767 0 1 7427700 + 61481 22296 41064 41988 71589 71589 -0.15758165316560735 STDDGVQF 8 Unmodified _STDDGVQF_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 868.365478515625 1 868.368303 867.361027 0.20039 0.00017401 -0.83103 -0.00072164 -0.63065 -0.00054763 868.3676131002551 39.521 0.37959 39.521 39.282 39.661 0 29 17 2 0 0 0 0.094359 2 21225 21120;21225 101.72 65.678 1 3235100 61482 2616 41065 41989 71590;71591 71591 -0.07795937058278923 STDDGVQF 8 Unmodified _STDDGVQF_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 868.3712158203125 1 868.368303 867.361027 0.39166 0.00034011 0.063131 5.4821E-05 0.45479 0.00039493 868.368363207372 46.178 0.35153 41.223 41.049 41.401 -4.9549 35 23 2 0 0 0 0.15234 2 28393 28393;28527 86.121 54.004 1 15165000 61483 2616 41065 41989 71592;71593 71592 -0.07795937058278923 STDDGVQF 8 Unmodified _STDDGVQF_ 0 0 0 nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;nc|ENSG00000108883|Q15029-2|EFTUD2;ENST00000586276.5_1_17:42937766-42940268:-|nuORF;ENST00000590367.5_1_17:42931463-42950195:-|nuORF nc|ENSG00000108883|Q15029-3|EFTUD2 nc|ENSG00000108883|Q15029-3|EFTUD2 MSMS AL20221201_MKP_PDAC_01 4 434.6885375976562 2 434.68779 867.361027 NaN NaN NaN NaN NaN NaN NaN 46.186 1 41.231 40.731 41.731 -4.9549 0 0 0 0.73801 1 28481 28481 26.341 12.833 1 61484 2616 41065 41989 71594 71594 -0.07795937058278923 STDGDSGSEDL 11 Unmodified _STDGDSGSEDL_ 0 0 0 ENSG00000173546|ENST00000308508|CSPG4;ENST00000567704.5_1_15:78194581-78196635:+|nuORF ENSG00000173546|ENST00000308508|CSPG4 ENSG00000173546|ENST00000308508|CSPG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.4745483398438 3 361.475524 1081.40474 -0.91307 -0.00033005 -1.3093 -0.00047328 -2.2224 -0.00080333 361.47497339403907 32.874 0.3497 32.874 32.658 33.008 0 36 17 3 0 0 0 0.71036 1 17258 17258 1.3296 0.11481 1 3012700 61485 8336 41066 41990 71595 71595 -0.13270417142462065 STDNDELEDEP 11 Unmodified _STDNDELEDEP_ 0 0 0 nc|ENSG00000126804|Q9Y2K1-2|ZBTB1;ENSG00000126804|ENST00000683701|ZBTB1 nc|ENSG00000126804|Q9Y2K1-2|ZBTB1 nc|ENSG00000126804|Q9Y2K1-2|ZBTB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8336181640625 3 421.833488 1262.47864 NaN NaN NaN NaN NaN NaN NaN 2.5694 1 2.5694 2.0694 3.0694 0 0 0 0 0.9435 1 1248 1248 0 0 1 61486 3972 41067 41991 71596 71596 -0.14210493770769972 STDPAIVVL 9 Unmodified _STDPAIVVL_ 0 0 0 REV__ENSG00000139684|ENST00000378720|ESD REV__ENSG00000139684|ENST00000378720|ESD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7637939453125 2 457.7633 913.512048 0.63015 0.00028846 0.33545 0.00015356 0.9656 0.00044202 457.76343566930655 61.248 0.40972 61.248 61.045 61.455 0 41 17 3 0 0 0 0.12841 1 34107 34107 30.225 0 1 2710700 + 61487 20427 41068 41992 71597 71597 0.05183249320384675 STDSIHTQMQ 10 Unmodified _STDSIHTQMQ_ 0 0 0 REV__CON__P50446 REV__CON__P50446 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2520141601562 2 574.256045 1146.49754 0.3884 0.00022304 -2.715 -0.0015591 -2.3266 -0.0013361 574.2548957914489 63.134 0.28607 63.134 62.985 63.272 0 29 11 3 0 0 0 0.42068 2 35198 35198;35266 20.454 6.6827 1 2635700 + + 61488 16839 41069 41993 71598;71599 71598 -0.0698519089007732 STDVCHDESVL 11 Unmodified _STDVCHDESVL_ 0 0 0 REV__ENSG00000214929|ENST00000344803|SPATA31D1 REV__ENSG00000214929|ENST00000344803|SPATA31D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.76123046875 2 602.76116 1203.50777 0.037995 2.2902E-05 0.43865 0.0002644 0.47665 0.00028731 602.7611172641426 37.102 0.47618 37.102 36.857 37.333 0 75 23 4 0 0 0 0.557 1 19782 19782 12.241 0 1 6714400 + 61489 24328 41070 41994 71600 71600 -0.08584627955474389 STDYETHEF 9 Unmodified _STDYETHEF_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7275390625 2 564.727643 1127.44073 -0.43786 -0.00024727 0.72518 0.00040953 0.28731 0.00016225 564.7279739845 30.033 0.31375 30.033 29.867 30.181 0 34 12 4 0 0 0 0.012148 1 15573 15573 74.423 40.32 1 10337000 61490 6946 41071 41995 71601 71601 -0.11788915174952308 STDYETHEF 9 Unmodified _STDYETHEF_ 0 0 0 nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB nc|ENSG00000163069|Q16585-2|SGCB nc|ENSG00000163069|Q16585-2|SGCB MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7285766601562 2 564.727643 1127.44073 1.5788 0.00089162 0.54771 0.00030931 2.1266 0.0012009 564.7277117749651 33.947 0.34827 29.962 29.785 30.133 -3.9853 31 18 2 0 0 0 0.0082281 1 19521 19521 92.822 65.193 1 12375000 61491 6946 41071 41995 71602 71602 -0.11788915174952308 STEYNNFI 8 Unmodified _STEYNNFI_ 0 0 0 ENSG00000151422|ENST00000281092|FER;nc|ENSG00000151422|P16591-2|FER ENSG00000151422|ENST00000281092|FER ENSG00000151422|ENST00000281092|FER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2253112792969 2 494.224539 986.434526 0.92386 0.0004566 0.2061 0.00010186 1.13 0.00055846 494.2250140844458 52.637 0.28208 52.578 52.446 52.728 -0.058918 34 13 3 0 0 0 0.75262 1 28503 28503 12.532 0 1 6375200 61492 6112 41072 41996 71603 71603 -0.05923388615804015 STFFTRQSESI 11 Unmodified _STFFTRQSESI_ 0 0 0 REV__ENST00000575606.5_1_18:3594122-3597210:+|nuORF REV__ENST00000575606.5_1_18:3594122-3597210:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821716308594 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 81.607 1 81.607 81.107 82.107 0 0 0 0 0.94287 1 45288 45288 0.45452 0 1 + 61493 29017 41073 41997 71604 71604 -0.013567270243584062 STFHQSSRPT 10 Unmodified _STFHQSSRPT_ 0 0 0 ENST00000344651.4_1_12:121160374-121160593:+|nuORF ENST00000344651.4_1_12:121160374-121160593:+|nuORF ENST00000344651.4_1_12:121160374-121160593:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1874389648438 3 383.187871 1146.54179 1.4304 0.00054813 -1.2718 -0.00048732 0.15869 6.0807E-05 383.1874329591759 94.847 0.44965 88.672 88.481 88.931 -6.1757 34 25 2 0 0 0 0.68209 1 62843 62843 2.6312 0.54523 1 5899800 61494 12018 41074 41998 71605 71605 -0.025624186815548455 STFKFRDPPQ 10 Unmodified _STFKFRDPPQ_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3172607421875 2 611.814387 1221.61422 1.3239 0.00081001 1.6124 0.00098652 2.9364 0.0017965 611.8160219866436 70.834 0.68225 70.87 70.444 71.127 0.035507 107 31 5 0 0 0 0.63089 1 38829 38829 10.824 0 1 75264000 + 61495 23320 41075 41999 71606 71606 0.012279153919962482 STGDTRIF 8 Unmodified _STGDTRIF_ 0 0 0 ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468|AGRN ENSG00000188157|ENST00000379370|AGRN ENSG00000188157|ENST00000379370|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2285461425781 2 448.727249 895.439946 0.75064 0.00033683 -2.9764 -0.0013356 -2.2258 -0.00099876 448.72557035617575 54.967 0.17709 54.899 54.803 54.98 -0.068741 14 8 2 0 0 0 0.78031 1 29873 29873 10.074 1.4806 1 1520300 61496 9631 41076 42000 71607 71607 -0.011956650333445396 STGGLTFSSP 10 Unmodified _STGGLTFSSP_ 0 0 0 ENST00000568805.5_1_16:20809048-20811281:-|nuORF;nc|ENSG00000196678|A8K979-2|ERI2;ENSG00000196678|ENST00000357967|ERI2 ENST00000568805.5_1_16:20809048-20811281:-|nuORF ENST00000568805.5_1_16:20809048-20811281:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2310485839844 2 477.232364 952.450176 NaN NaN NaN NaN NaN NaN NaN 17.654 1 17.659 17.159 18.159 0.0050564 0 0 0 0.97592 1 8915 8915 3.2813 0 1 61497 9859 41077 42001 71608 71608 -0.02795102098764346 STGISYETL 9 Unmodified _STGISYETL_ 0 0 0 ENSG00000087152|ENST00000587097|ATXN7L3;nc|ENSG00000087152|Q14CW9-2|ATXN7L3 ENSG00000087152|ENST00000587097|ATXN7L3 ENSG00000087152|ENST00000587097|ATXN7L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.4724731445312 1 970.472768 969.465492 0.41036 0.00039824 0.81512 0.00079105 1.2255 0.0011893 970.4739106125032 53.306 0.48579 53.306 53.08 53.566 0 51 21 4 0 0 0 0.0090851 1 29461 29461 85.357 10.934 1 31060000 61498 1457 41078 42002 71609 71609 -0.020462353015659573 STGLLVRRP 9 Unmodified _STGLLVRRP_ 0 0 0 REV__ENST00000535977.5_1_16:678431-678971:+|nuORF REV__ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8087158203125 2 499.808908 997.603263 0.019272 9.6322E-06 0.79926 0.00039948 0.81853 0.00040911 499.80914841749865 29.86 0.26146 29.89 29.734 29.995 0.030106 14 9 2 0 0 0 0.54444 1 15623 15623 4.756 0 1 2005000 + 61499 28534 41079 42003 71610 71610 0.10436557808372982 STGLLVRRP 9 Unmodified _STGLLVRRP_ 0 0 0 REV__ENST00000535977.5_1_16:678431-678971:+|nuORF REV__ENST00000535977.5_1_16:678431-678971:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.808908 997.603263 0.019272 9.6322E-06 0.79926 0.00039948 0.81853 0.00040911 499.80914841749865 29.86 0.26146 29.89 29.734 29.995 0.030106 0 0 NaN 4.756 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2005000 + 61500 28534 41079 42003 0.10436557808372982 STGLSDTSQAR 11 Unmodified _STGLSDTSQAR_ 0 0 0 REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF REV__ENST00000575475.2_1_17:5185712-5281605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.772705078125 2 561.772916 1121.53128 -0.32969 -0.00018521 0.46563 0.00026158 0.13594 7.6366E-05 561.7731879316012 15.724 0.28731 15.724 15.607 15.894 0 90 67 2 0 0 0 0.62338 1 7622 7622 10.151 1.4052 1 838720 + 61501 17140 41080 42004 71611 71611 -0.0246244612665123 STGPESTHPLP 11 Unmodified _STGPESTHPLP_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF ENSG00000065883|ENST00000181839|CDK13 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7743530273438 2 561.774928 1121.5353 NaN NaN NaN NaN NaN NaN NaN 15.588 1 15.588 15.088 16.088 0 0 0 0 0.93933 1 7521 7521 2.9952 0 1 61502 918 41081 42005 71612 71612 -0.020603566329327805 STGPGAFAALG 11 Unmodified _STGPGAFAALG_ 0 0 0 REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7406921386719 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 15.405 1 15.405 14.905 15.905 0 0 0 0 0.84159 1 7417 7417 10.074 2.465 1 + 61503 28993 41082 42006 71613 71613 -0.004590919992438103 STGPGAFAALG 11 Unmodified _STGPGAFAALG_ 0 0 0 REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF REV__ENST00000573070.5_1_17:7297840-7298119:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7410583496094 2 474.742899 947.471246 NaN NaN NaN NaN NaN NaN NaN 15.523 1 15.529 15.029 16.029 0.0057774 0 0 0 0.9385 1 7739 7739 3.5965 1.098 1 + 61504 28993 41082 42006 71614 71614 -0.004590919992438103 STGSSFHL 8 Unmodified _STGSSFHL_ 0 0 0 REV__ENST00000258383.3_1_2:224824657-224828482:+|nuORF REV__ENST00000258383.3_1_2:224824657-224828482:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 418.1993408203125 2 418.200867 834.387182 NaN NaN NaN NaN NaN NaN NaN 26.33 1 23.379 22.879 23.879 -2.9511 0 0 0 0.93587 1 14498 14498 13.508 0.97634 1 + 61505 24940 41083 42007 71615 71615 -0.036636230961448746 STGTGSSCDL 10 Unmodified _STGTGSSCDL_ 0 0 0 ENSG00000031081|ENST00000264245|ARHGAP31 ENSG00000031081|ENST00000264245|ARHGAP31 ENSG00000031081|ENST00000264245|ARHGAP31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.3739624023438 1 927.372402 926.365126 1.4816 0.001374 0.1489 0.00013809 1.6306 0.0015121 927.3729715431565 79.353 0.327 73.177 73.008 73.335 -6.1757 23 18 2 0 0 0 0.48505 1 51955 51955 17.113 3.605 1 6685600 61506 589 41084 42008 71616 71616 -0.10100215626869158 STHAHPGS 8 Unmodified _STHAHPGS_ 0 0 0 REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1846618652344 2 397.183009 792.351465 NaN NaN NaN NaN NaN NaN NaN 68.296 1 68.296 67.796 68.796 0 0 0 0 0.97444 1 38074 38074 0.6015 0 1 + 61507 28382 41085 42009 71617 71617 -0.0530166055312975 STHAHPGS 8 Unmodified _STHAHPGS_ 0 0 0 REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.1849670410156 2 397.183009 792.351465 NaN NaN NaN NaN NaN NaN NaN 73.831 1 73.831 73.331 74.331 0 0 0 0 0.97444 1 41098 41098 2.3027 0 1 + 61508 28382 41085 42009 71618 71618 -0.0530166055312975 STHAHPGS 8 Unmodified _STHAHPGS_ 0 0 0 REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF REV__ENST00000527085.1_1_11:1319633-1319792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.1838989257812 2 397.183009 792.351465 NaN NaN NaN NaN NaN NaN NaN 89.487 1 88.985 88.485 89.485 -0.50171 0 0 0 0.97444 1 48926 48926 0.6015 0 1 + 61509 28382 41085 42009 71619 71619 -0.0530166055312975 STHHLGYSAF 10 Unmodified _STHHLGYSAF_ 0 0 0 REV__ENST00000415574.6_1_2:132258965-132266117:+|nuORF;REV__nc|ENSG00000136699|Q9NXE4-3|SMPD4 REV__nc|ENSG00000136699|Q9NXE4-3|SMPD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7630615234375 2 560.26453 1118.51451 0.78115 0.00043765 -0.4999 -0.00028008 0.28125 0.00015758 560.7656993035226 40.671 0.6263 40.367 39.856 40.482 -0.30304 60 29 3 0 0 0 0.23634 1 21495 21495 6.7232 0 1 2194400 + 61510 26757;20173 41086 42010 71620 71620 -0.04000902221969227 STHILCSRAD 10 Unmodified _STHILCSRAD_ 0 0 0 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7694702148438 2 551.769123 1101.52369 0.76529 0.00042226 0.52574 0.00029009 1.291 0.00071235 551.7693945153982 46.183 0.66952 46.149 45.878 46.548 -0.033417 55 31 2 0 0 0 0.66569 1 24969 24969 6.7232 0.96273 1 4356700 + 61511 20532 41087 42011 71621 71621 -0.023008769279385888 STHILCSRAD 10 Unmodified _STHILCSRAD_ 0 0 0 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 REV__nc|ENSG00000141424|Q13433-2|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7695922851562 2 551.769123 1101.52369 0.3615 0.00019946 0.92104 0.0005082 1.2825 0.00070766 551.7695986792927 48.511 0.413 48.467 48.281 48.694 -0.04369 50 20 3 0 0 0 0.56348 1 26109 26109 13.042 1.4022 1 31876000 + 61512 20532 41087 42011 71622 71622 -0.023008769279385888 STHKEYGIF 9 Unmodified _STHKEYGIF_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5611877441406 3 361.181946 1080.52401 -0.040237 -1.4533E-05 -0.66702 -0.00024091 -0.70725 -0.00025545 361.18188890431185 29.386 0.12782 29.416 29.341 29.469 0.030104 9 6 2 0 0 0 0.20528 1 15322 15322 5.2969 1.4206 1 6942800 61513 4151 41088 42012 71623 71623 -0.013031339364488304 STHLTQHQK 9 Unmodified _STHLTQHQK_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3200073242188 2 540.283254 1078.55196 NaN NaN NaN NaN NaN NaN NaN 101.93 1 101.89 101.39 102.39 -0.045853 0 0 0 0.82579 1 56625 56625 7.2892 2.96 1 61514 1674 41089 42013 71624 71624 0.01582189043665494 STHWLEHI 8 Unmodified _STHWLEHI_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000087053|Q13614-2|MTMR2 ENSG00000171100|ENST00000370396|MTM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.1700439453125 2 511.756341 1021.49813 NaN NaN NaN NaN NaN NaN NaN 67.49 1 67.49 66.99 67.99 0 0 0 0 0.97444 1 37633 37633 2.5775 0.27475 1 61515 8061;1448 41090 42014 71625 71625 -0.011759833880546466 STIEQRCLRY 10 Unmodified _STIEQRCLRY_ 0 0 0 REV__ENSG00000118193|ENST00000367350|KIF14 REV__ENSG00000118193|ENST00000367350|KIF14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8240356445312 2 634.824429 1267.63431 0.10009 6.3539E-05 -0.48111 -0.00030542 -0.38102 -0.00024188 634.8241852633315 80.047 0.36127 80.047 79.864 80.225 0 31 19 2 0 0 0 0.71123 1 44511 44511 1.6526 0.17072 1 1202900 + 61516 19137 41091 42015 71626 71626 0.011193430603043453 STKICFLSNHF 11 Unmodified _STKICFLSNHF_ 0 0 0 nc|ENSG00000150477|Q86T90-3|KIAA1328 nc|ENSG00000150477|Q86T90-3|KIAA1328 nc|ENSG00000150477|Q86T90-3|KIAA1328 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8853149414062 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 35.072 1 35.1 34.6 35.6 0.027401 0 0 0 0.94209 1 18519 18519 1.0136 0.051299 1 61517 16267 41092 42016 71627 71627 -0.0027487130862482445 STKKKPRTK 9 Unmodified _STKKKPRTK_ 0 0 0 REV__ENST00000507635.5_1_5:137780026-137781437:+|nuORF REV__ENST00000507635.5_1_5:137780026-137781437:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 537.3426513671875 2 537.343115 1072.67168 NaN NaN NaN NaN NaN NaN NaN 104.48 1 98.303 97.803 98.803 -6.1757 0 0 0 0.84737 1 69966 69966 1.8442 1.1539 1 + 61518 19863 41093 42017 71628 71628 0.13824802388216995 STKTLLTVSWL 11 Unmodified _STKTLLTVSWL_ 0 0 0 ENST00000419382.5_1_7:17325918-17326062:-|nuORF ENST00000419382.5_1_7:17325918-17326062:-|nuORF ENST00000419382.5_1_7:17325918-17326062:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.91015625 3 416.911456 1247.71254 NaN NaN NaN NaN NaN NaN NaN 40.343 1 35.814 35.314 36.314 -4.5294 0 0 0 0.93648 1 24078 24078 5.0475 0.3316 1 61519 13087 41094 42018 71629 71629 0.0985909891717256 STLASSALS 9 Unmodified _STLASSALS_ 0 0 0 nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP nc|ENSG00000146147|Q5VWP3-4|MLIP nc|ENSG00000146147|Q5VWP3-4|MLIP MSMS AL20221201_MKP_PDAC_01 4 418.7227478027344 2 418.721633 835.428712 NaN NaN NaN NaN NaN NaN NaN 24.218 1 21.391 20.891 21.891 -2.8273 0 0 0 0.32177 1 13169 13169 24.021 0 1 61520 5759 41095 42019 71630 71630 0.004415128725213435 STLGTGSTI 9 Unmodified _STLGTGSTI_ 0 0 0 REV__ENST00000541346.1_1_12:6858974-6859115:-|nuORF REV__ENST00000541346.1_1_12:6858974-6859115:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 418.7221374511719 2 418.721633 835.428712 NaN NaN NaN NaN NaN NaN NaN 24.406 1 21.579 21.079 22.079 -2.8273 0 0 0 0.76439 1 13286 13286 7.2892 0 1 + 61521 28598 41096 42020 71631 71631 0.004415128725440809 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.22607421875 3 351.225598 1050.65496 0.57667 0.00020254 0.20725 7.2793E-05 0.78393 0.00027534 351.2257298576741 63.538 0.51627 63.519 63.321 63.837 -0.018623 53 24 3 0 0 0 0.01958 2 34744 34744;34861 63.961 29.028 1 7508800 61522 5569 41097 42021 71632;71633 71632 0.13166301502246824 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2265014648438 3 351.225598 1050.65496 0.88862 0.00031211 0.86729 0.00030462 1.7559 0.00061672 351.22599838755394 93.075 0.25941 86.9 86.754 87.014 -6.1757 29 16 3 0 0 0 0.037253 1 61526 61526 51.415 19.378 1 47599000 61523 5569 41097 42021 71634 71634 0.13166301502246824 STLHLVLRL 9 Unmodified _STLHLVLRL_ 0 0 0 ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENSG00000221983|ENST00000442744|UBA52;ENSG00000143947|ENST00000272317|RPS27A;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000150991|ENST00000339647|UBC ENST00000578649.1_1_17:16284470-16285908:+|nuORF ENST00000578649.1_1_17:16284470-16285908:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.282470703125 2 526.334759 1050.65496 0.22503 0.00011844 0.069891 3.6786E-05 0.29492 0.00015523 526.3347703211439 93.064 0.21086 86.889 86.77 86.981 -6.1757 26 12 3 0 0 0 0.079233 1 61596 61596 43.858 28.011 1 22651000 61524 5569 41097 42021 71635 71635 0.13166301502246824 STLHNRNHSFR 11 Unmodified _STLHNRNHSFR_ 0 0 0 REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF REV__ENST00000470438.5_1_2:242435079-242436717:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 684.8475952148438 2 684.847616 1367.68068 NaN NaN NaN NaN NaN NaN NaN 88.657 1 82.481 81.981 82.981 -6.1757 0 0 0 0.75116 1 58502 58502 14.405 3.5815 1 + 61525 19003 41098 42022 71636 71636 0.011545440065901857 STLKLQIE 8 Unmodified _STLKLQIE_ 0 0 0 ENST00000476849.5_1_2:99733658-99743552:-|nuORF;ENST00000489926.6_1_2:99725972-99757602:-|nuORF;ENST00000478090.5_1_2:99689501-99743552:-|nuORF ENST00000476849.5_1_2:99733658-99743552:-|nuORF ENST00000476849.5_1_2:99733658-99743552:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.2770690917969 2 466.276575 930.538597 NaN NaN NaN NaN NaN NaN NaN 103.45 1 97.275 96.775 97.775 -6.1757 0 0 0 0.97444 1 69360 69360 4.756 0 1 61526 13987 41099 42023 71637 71637 0.07054938211729223 STLNKFTESMV 11 Unmodified _STLNKFTESMV_ 0 0 0 REV__nc|ENSG00000204644|Q9NU63|ZFP57 REV__nc|ENSG00000204644|Q9NU63|ZFP57 MSMS AL20221201_MKP_PDAC_01 4 628.8106079101562 2 628.813196 1255.61184 NaN NaN NaN NaN NaN NaN NaN 61.204 1 55.057 54.557 55.557 -6.1478 0 0 0 0.85601 1 39410 39410 9.3831 0 1 + 61527 24194 41100 42024 71638 71638 -0.00574301128017396 STLPKGSPM 9 Unmodified _STLPKGSPM_ 0 0 0 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2428894042969 2 459.241678 916.468803 1.1607 0.00053305 4.4769 0.002056 5.6376 0.002589 459.2442382986852 42.052 0.60657 37.367 36.937 37.544 -4.6846 82 38 3 0 0 0 0.34999 1 25414 25414 14.838 0.25658 1 23309000 + 61528 24315 41101 42025 71639 71639 0.0072273627146159924 STLQLVRII 9 Unmodified _STLQLVRII_ 0 0 0 REV__nc|ENSG00000035403|P18206-3|VCL REV__nc|ENSG00000035403|P18206-3|VCL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.290771484375 2 521.834591 1041.65463 1.4483 0.00075577 -1.4516 -0.00075751 -0.0033473 -1.7467E-06 521.8336777596062 95.829 0.26405 89.653 89.521 89.785 -6.1757 34 15 3 0 0 0 0.17718 1 63477 63477 20.454 1.1966 1 35023000 + 61529 17162 41102 42026 71640 71640 0.13546881782417586 STLYFYKFF 9 Unmodified _STLYFYKFF_ 0 0 0 ENSG00000179363|ENST00000319560|TMEM31 ENSG00000179363|ENST00000319560|TMEM31 ENSG00000179363|ENST00000319560|TMEM31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8743286132812 3 405.874342 1214.6012 0.5218 0.00021179 -2.9014 -0.0011776 -2.3796 -0.00096583 406.207103080375 42.976 0.1715 42.976 42.834 43.006 0 16 8 3 0 0 0 0.41742 1 23316 23316 7.609 1.4171 1 5451200 61530 8831 41103 42027 71641 71641 0.0024808427988318726 STLYSGRSQ 9 Unmodified _STLYSGRSQ_ 0 0 0 ENST00000358170.6_1_1:207968017-207968197:+|nuORF ENST00000358170.6_1_1:207968017-207968197:+|nuORF ENST00000358170.6_1_1:207968017-207968197:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 499.7512817382812 2 499.748713 997.482873 NaN NaN NaN NaN NaN NaN NaN 40.037 1 35.507 35.007 36.007 -4.5294 0 0 0 0.39043 1 23853 23853 20.454 0 1 61531 12124 41104 42028 71642 71642 -0.015968949758985218 STMAGRYLEGM 11 Unmodified _STMAGRYLEGM_ 0 0 0 REV__nc|ENSG00000104177|Q9P2K5-3|MYEF2 REV__nc|ENSG00000104177|Q9P2K5-3|MYEF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.2784423828125 2 608.278466 1214.54238 NaN NaN NaN NaN NaN NaN NaN 17.048 1 17.053 16.553 17.553 0.0050564 0 0 0 0.9435 1 8581 8581 0 0 1 + 61532 18340 41105 42029 71643 71643 -0.05631083348430366 STMDFNVSKLD 11 Unmodified _STMDFNVSKLD_ 0 0 0 REV__ENSG00000170248|ENST00000307296|PDCD6IP REV__ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5319213867188 3 419.532427 1255.57545 -0.014925 -6.2614E-06 -1.2354 -0.0005183 -1.2503 -0.00052456 419.53194779898575 32.059 0.26959 31.93 31.745 32.015 -0.12915 15 10 2 0 0 0 0.70147 1 16686 16686 4.1166 1.8639 1 2768900 + 61533 22459 41106 42030 71644 71644 -0.04211178024684159 STMDFNVSKLD 11 Unmodified _STMDFNVSKLD_ 0 0 0 REV__ENSG00000170248|ENST00000307296|PDCD6IP REV__ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 419.532427 1255.57545 -0.014925 -6.2614E-06 -1.2354 -0.0005183 -1.2503 -0.00052456 419.53194779898575 32.059 0.26959 31.93 31.745 32.015 -0.12915 0 0 NaN 4.1166 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2768900 + 61534 22459 41106 42030 -0.04211178024684159 STMMNGFMY 9 Unmodified _STMMNGFMY_ 0 0 0 ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.21240234375 2 541.211206 1080.40786 -0.55184 -0.00029866 0.85689 0.00046376 0.30505 0.0001651 541.211554401637 55.387 0.24776 55.387 55.283 55.531 0 22 10 3 0 0 0 0.49272 1 30788 30788 7.9102 0 1 1501500 61535 9450 41107 42031 71645 71645 -0.12912860094638745 STMVALTAL 9 Unmodified _STMVALTAL_ 0 0 0 REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF REV__ENST00000482556.5_1_20:47241953-47242436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4948120117188 1 906.496481 905.489204 -0.11057 -0.00010023 0.83504 0.00075696 0.72447 0.00065673 906.4976199382162 49.002 0.29728 48.63 48.48 48.778 -0.37172 32 14 3 0 0 0 0.019303 1 26288 26288 64.236 3.8468 1 4998500 + 61536 27724 41108 42032 71646 71646 0.03267906931239395 STNCISATVNY 11 Unmodified _STNCISATVNY_ 0 0 0 REV__ENSG00000186105|ENST00000334994|LRRC70 REV__ENSG00000186105|ENST00000334994|LRRC70 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.762939453125 2 586.766245 1171.51794 NaN NaN NaN NaN NaN NaN NaN 47.136 1 47.136 46.636 47.636 0 0 0 0 0.81193 1 25798 25798 11.495 2.7493 1 + 61537 23551 41109 42033 71647 71647 -0.06096020230256727 STNLDFRNKVG 11 Unmodified _STNLDFRNKVG_ 0 0 0 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 REV__nc|ENSG00000156869|Q6ZNA5-2|FRRS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.5550231933594 3 417.554443 1249.6415 0.4469 0.00018661 2.7365 0.0011427 3.1834 0.0013293 417.5552788609808 16.504 0.1697 13.948 13.874 14.044 -2.557 34 25 2 0 0 0 0.69316 1 8532 8532 2.2527 0 1 4536700 + 61538 29722 41110 42034 71648 71648 0.02666398932365155 STPFLTDLELL 11 Unmodified _STPFLTDLELL_ 0 0 0 REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.84033203125 2 624.839736 1247.66492 0.30134 0.00018829 0.67333 0.00042072 0.97467 0.00060901 624.8398964235103 94.274 0.18686 93.854 93.743 93.93 -0.42044 17 10 2 0 0 0 0.68427 1 51495 51495 5.7319 0 1 315860 + 61539 29091 41111 42035 71649 71649 0.05099399926325532 STPFLTDLELL 11 Unmodified _STPFLTDLELL_ 0 0 0 REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 624.839736 1247.66492 0.30134 0.00018829 0.67333 0.00042072 0.97467 0.00060901 624.8398964235103 94.274 0.18686 93.854 93.743 93.93 -0.42044 0.060113 -0.00010101 NaN 5.7319 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 315860 + 61540 29091 41111 42035 0.05099399926325532 STPFLTDLELL 11 Unmodified _STPFLTDLELL_ 0 0 0 REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF REV__ENST00000585159.5_1_18:70205290-70205344:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 624.839736 1247.66492 0.23941 0.00014959 0.88612 0.00055368 1.1255 0.00070328 625.3421572480323 99.909 0.076614 93.733 93.664 93.74 -6.1757 -0.060113 0.00016492 NaN 5.7319 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 36348000 + 61541 29091 41111 42035 0.05099399926325532 STPGQHLATWT 11 Unmodified _STPGQHLATWT_ 0 0 0 ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.3306884765625 2 599.796195 1197.57784 0.29928 0.00017951 -3.5159 -0.0021088 -3.2166 -0.0019293 600.2960124762335 45.953 0.15936 45.925 45.884 46.043 -0.028011 8 6 2 0 0 0 0.65108 1 24725 24725 8.7454 1.4562 1 954590 61542 9433 41112 42036 71650 71650 -0.013049615047066254 STPLSNFDCGV 11 Unmodified _STPLSNFDCGV_ 0 0 0 REV__ENST00000409663.7_1_4:154523409-154524544:+|nuORF REV__ENST00000409663.7_1_4:154523409-154524544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2559814453125 2 570.255514 1138.49647 2.3627 0.0013473 -1.0821 -0.00061706 1.2806 0.00073026 570.2547865388296 96.534 0.5714 96.527 96.282 96.853 -0.0070114 61 20 4 0 0 0 0.46578 2 53539 53539;53640 18.146 5.1039 1 40640000 + 61543 26698 41113 42037 71651;71652 71651 -0.06723405259003812 STPLSNFDCGV 11 Unmodified _STPLSNFDCGV_ 0 0 0 REV__ENST00000409663.7_1_4:154523409-154524544:+|nuORF REV__ENST00000409663.7_1_4:154523409-154524544:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3220825195312 2 570.255514 1138.49647 2.3627 0.0013473 -1.0821 -0.00061706 1.2806 0.00073026 570.2547865388296 96.534 0.5714 96.527 96.282 96.853 -0.0070114 61 20 4 0 0 0 0.27972 1 53527 53527 18.146 4.2403 1 40640000 + 61544 26698 41113 42037 71653 71653 -0.06723405259003812 STQDGGKRIME 11 Unmodified _STQDGGKRIME_ 0 0 0 REV__nc|ENSG00000215859|A8MUH7-2|PDZK1P1 REV__nc|ENSG00000215859|A8MUH7-2|PDZK1P1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.8681640625 3 407.867922 1220.58194 0.71725 0.00029254 1.0069 0.0004107 1.7242 0.00070324 408.20239442017424 35.376 0.29634 31.281 31.137 31.434 -4.0951 27 17 2 0 0 0 0.5229 1 20494 20494 8.7518 0 1 12378000 + 61545 22820 41114 42038 71654 71654 -0.019532400733169197 STQLLILDPPQ 11 Unmodified _STQLLILDPPQ_ 0 0 0 ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-6|ADAMTSL1;nc|ENSG00000178031|Q8N6G6-5|ADAMTSL1 ENST00000380559.7_1_9:18706652-18908543:+|nuORF ENST00000380559.7_1_9:18706652-18908543:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 612.8453369140625 2 612.845353 1223.67615 NaN NaN NaN NaN NaN NaN NaN 96.168 1 89.993 89.493 90.493 -6.1757 0 0 0 0.57923 1 63721 63721 21.59 2.3332 1 61546 8723 41115 42039 71655 71655 0.07326222020469686 STRDQELLW 9 Unmodified _STRDQELLW_ 0 0 0 APC2|p.A657T|1|0.15|ENSG00000115266|chr19:1465270-1465270|G/A|missense_variant APC2|p.A657T|1|0.15|ENSG00000115266|chr19:1465270-1465270|G/A|missense_variant APC2|p.A657T|1|0.15|ENSG00000115266|chr19:1465270-1465270|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2886352539062 2 574.290745 1146.56694 1.1362 0.00065249 0.53807 0.00030901 1.6742 0.00096149 574.2902484749709 102.43 0.087013 96.255 96.193 96.28 -6.1757 10 7 2 0 0 0 0.49272 1 68732 68732 7.9102 0 1 2157200 61547 32 41116 42040 71656 71656 -0.00048363879000135057 STRGRDAA 8 Unmodified _STRGRDAA_ 0 0 0 REV__ENST00000410066.5_1_2:180635370-180726053:-|nuORF REV__ENST00000410066.5_1_2:180635370-180726053:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.214111328125 2 417.21484 832.415128 NaN NaN NaN NaN NaN NaN NaN 7.7155 1 7.7307 7.2307 8.2307 0.015238 0 0 0 0.97444 1 3848 3848 0 0 1 + 61548 26707 41117 42041 71657 71657 -0.007783001160646563 STRLPSQYI 9 Unmodified _STRLPSQYI_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MSMS AL20221201_MKP_PDAC_01 4 532.7918090820312 2 532.790381 1063.56621 NaN NaN NaN NaN NaN NaN NaN 45.76 1 40.805 40.305 41.305 -4.9549 0 0 0 0.20153 1 28152 28152 30.637 8.8899 1 61549 10814 41118 42042 71658 71658 0.036968414719467546 STRVEEEEN 9 Unmodified _STRVEEEEN_ 0 0 0 ENST00000302763.11_1_5:138160414-138163228:+|nuORF ENST00000302763.11_1_5:138160414-138163228:+|nuORF ENST00000302763.11_1_5:138160414-138163228:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.7697143554688 2 546.743825 1091.4731 0.36101 0.00019738 -0.094102 -5.145E-05 0.26691 0.00014593 546.7440711158088 40.352 0.17851 35.823 35.774 35.952 -4.5294 15 10 2 0 0 0 0.18882 1 24158 24158 10.824 0 1 4083400 61550 11587 41119 42043 71659 71659 -0.06898127771955842 STSAASLWS 9 Unmodified _STSAASLWS_ 0 0 0 REV__ENST00000451894.6_1_5:43041964-43043654:+|nuORF REV__ENST00000451894.6_1_5:43041964-43043654:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 911.4358520507812 1 909.431238 908.423961 -0.024244 -2.2048E-05 -0.048825 -4.4403E-05 -0.073069 -6.6451E-05 909.4310885731373 40.099 0.52906 35.57 35.26 35.79 -4.5294 114 44 3 0 0 0 0.23158 1 23765 23765 20.454 0 1 198360000 + 61551 27211 41120 42044 71660 71660 -0.03391371270242871 STSAQLMEVY 10 Unmodified _STSAQLMEVY_ 0 0 0 REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 REV__nc|ENSG00000155629|Q6ZUJ8-3|PIK3AP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.32666015625 2 564.765714 1127.51688 1.4082 0.00079528 1.0992 0.00062081 2.5074 0.0014161 564.7662949389204 90.583 0.48843 84.407 84.171 84.659 -6.1757 59 28 3 0 0 0 0.22636 1 59810 59810 17.113 1.2657 1 17446000 + 61552 21278 41121 42045 71661 71661 -0.04178234599157804 STSFAKQRGEA 11 Unmodified _STSFAKQRGEA_ 0 0 0 REV__nc|ENSG00000272987|P0C617|OR5AL1 REV__nc|ENSG00000272987|P0C617|OR5AL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2987060546875 2 591.299101 1180.58365 -0.46895 -0.00027729 0.40097 0.0002371 -0.067977 -4.0195E-05 591.299161369443 36.093 0.29598 35.843 35.683 35.979 -0.2497 31 13 3 0 0 0 0.073778 1 18895 18895 45.74 1.9675 1 14979000 + 61553 30000 41122 42046 71662 71662 0.0005813700697672175 STSFAKQRGEA 11 Unmodified _STSFAKQRGEA_ 0 0 0 REV__nc|ENSG00000272987|P0C617|OR5AL1 REV__nc|ENSG00000272987|P0C617|OR5AL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2994995117188 2 591.299101 1180.58365 0.42798 0.00025306 0.73487 0.00043453 1.1629 0.00068759 591.2991817586828 40.476 0.47705 35.947 35.718 36.195 -4.5294 74 29 4 0 0 0 0.10142 1 24237 24237 42.312 0.47285 1 28013000 + 61554 30000 41122 42046 71663 71663 0.0005813700697672175 STSGELSFDSL 11 Unmodified _STSGELSFDSL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5117797851562 3 381.511909 1141.5139 0.76912 0.00029343 -2.508 -0.00095682 -1.7388 -0.00066339 381.5108853946419 38.665 0.35746 34.296 34.138 34.495 -4.3689 32 22 2 0 0 0 0.6889 1 22840 22840 2.4348 0 1 17810000 61555 2180 41123 42047 71664 71664 -0.05119786452337394 STSGPRAF 8 Unmodified _STSGPRAF_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7091674804688 2 411.70886 821.403166 -0.43104 -0.00017746 0.76527 0.00031507 0.33423 0.00013761 411.7091519702758 22.037 0.31073 22.037 21.914 22.224 0 40 23 2 0 0 0 0.63229 2 11156 11156;11274 23.148 5.0134 1 975400 + 61556 165 41124 42048 71665;71666 71665 -0.01467916859246543 STSGPRAFS 9 Unmodified _STSGPRAFS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2247924804688 2 455.224874 908.435195 -0.068786 -3.1313E-05 -0.23266 -0.00010591 -0.30144 -0.00013722 455.22474507980803 19.79 0.49014 19.79 19.561 20.051 0 157 68 3 0 0 0 0.30202 1 10006 10006 17.113 0.1706 1 4525200 + 61557 165 41125 42049 71667 71667 -0.022685491760967125 STSGPRAFSS 10 Unmodified _STSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7403869628906 2 498.740888 995.467223 NaN NaN NaN NaN NaN NaN NaN 20.047 1 20.047 19.547 20.547 0 0 0 0 0.27319 1 10068 10068 38.615 14.594 1 + 61558 165 41126 42050 71668 71668 -0.030691814929582506 STSGPRAFSS 10 Unmodified _STSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7410278320312 2 498.740888 995.467223 -0.54728 -0.00027295 1.0349 0.00051617 0.48766 0.00024322 498.7415588281327 19.947 0.22688 19.976 19.817 20.044 0.028355 19 12 2 0 0 0 0.36296 1 10043 10043 23.79 3.3362 1 605260 + 61559 165 41126 42050 71669 71669 -0.030691814929582506 STSGPRAFSS 10 Unmodified _STSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7428894042969 2 498.740888 995.467223 0.81436 0.00040616 0.026276 1.3105E-05 0.84064 0.00041926 498.7409757525433 22.271 0.3407 19.536 19.335 19.675 -2.7348 30 17 2 0 0 0 0.20195 2 11925 11925;12030 33.445 11.908 1 2477400 + 61560 165 41126 42050 71670;71671 71670 -0.030691814929582506 STSIHLHD 8 Unmodified _STSIHLHD_ 0 0 0 REV__ENSG00000105605|ENST00000391767|CACNG7 REV__ENSG00000105605|ENST00000391767|CACNG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2254333496094 2 455.224874 908.435195 1.0075 0.00045862 0.3078 0.00014012 1.3153 0.00059874 455.2249656380314 21.955 0.45179 19.22 19.054 19.505 -2.7348 44 25 2 0 0 0 0.37649 1 11879 11879 46.921 6.4723 1 3403100 + 61561 18437 41127 42051 71672 71672 -0.022685491760967125 STSNSNNN 8 Unmodified _STSNSNNN_ 0 0 0 nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A nc|ENSG00000115355|Q3V6T2-5|CCDC88A MULTI-MSMS AL20221201_MKP_PDAC_01 4 837.3329467773438 1 837.333315 836.326038 1.5391 0.0012887 -1.6408 -0.0013739 -0.10168 -8.5136E-05 837.3318498667604 103.09 0.070251 96.917 96.879 96.949 -6.1757 27 17 2 0 0 0 0.80992 1 69138 69138 0.69038 0 1 10313000 61562 3114 41128 42052 71673 71673 -0.0986717986623944 STSRWGGL 8 Unmodified _STSRWGGL_ 0 0 0 ENST00000470209.5_1_X:153173185-153178999:-|nuORF ENST00000470209.5_1_X:153173185-153178999:-|nuORF ENST00000470209.5_1_X:153173185-153178999:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.2225036621094 2 432.222134 862.429715 NaN NaN NaN NaN NaN NaN NaN 36.036 1 31.843 31.343 32.343 -4.1928 0 0 0 0.92452 1 20995 20995 15.847 0 1 61563 13849 41129 42053 71674 71674 -0.007002279678999912 STTHTARWY 9 Unmodified _STTHTARWY_ 0 0 0 REV__nc|ENSG00000283228|O00305-2|CACNB4 REV__nc|ENSG00000283228|O00305-2|CACNB4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2449951171875 2 561.76998 1121.52541 -0.078745 -4.4236E-05 0.65275 0.00036669 0.574 0.00032246 562.271125347583 55.256 0.36034 55.256 55.029 55.389 0 18 15 2 0 0 0 0.20528 1 30612 30612 4.756 2.9118 1 2412100 + 61564 23269 41130 42054 71675 71675 -0.030494998476797264 STTKYAVNSF 10 Unmodified _STTKYAVNSF_ 0 0 0 REV__ENST00000403870.7_1_10:97816887-97816989:+|nuORF REV__ENST00000403870.7_1_10:97816887-97816989:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7805786132812 2 559.279846 1116.54514 0.27352 0.00015297 0.011512 6.4382E-06 0.28503 0.00015941 559.2800700874266 42.095 0.57671 42.095 41.785 42.362 0 122 29 6 0 0 0 0.40136 1 22678 22678 21.537 6.2885 1 180960000 + 61565 26632 41131 42055 71676 71676 -0.00847168627569772 STTMDYPSL 9 Unmodified _STTMDYPSL_ 0 0 0 nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3 nc|ENSG00000259207|P05106-2|ITGB3 nc|ENSG00000259207|P05106-2|ITGB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7482604980469 2 507.726058 1013.43756 0.43727 0.00022201 -0.89653 -0.00045519 -0.45926 -0.00023318 507.72508283408456 50.498 0.31345 50.498 50.35 50.664 0 42 14 4 0 0 0 0.18521 1 27899 27899 16.942 5.302 1 6291000 61566 10822 41132 42056 71677 71677 -0.06861881553300009 STTQGQDLSTI 11 Unmodified _STTQGQDLSTI_ 0 0 0 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7870483398438 2 575.78295 1149.55135 1.0384 0.0005979 1.4688 0.00084572 2.5072 0.0014436 575.7861327331659 42.875 0.44029 42.875 42.565 43.006 0 66 22 4 0 0 0 0.37677 1 23182 23182 22.736 4.5899 1 12115000 61567 9698 41133 42057 71678 71678 -0.017446951866986637 STTTTTIP 8 Unmodified _STTTTTIP_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.2172546386719 2 411.216183 820.417813 NaN NaN NaN NaN NaN NaN NaN 19.565 1 19.565 19.065 20.065 0 0 0 0 0.95201 1 9792 9792 10.183 0 1 + 61568 19478;29616 41134 42058 71679 71679 0.000421104982478937 STVFSDQFGLH 11 Unmodified _STVFSDQFGLH_ 0 0 0 REV__nc|ENSG00000162599|Q12857-2|NFIA REV__nc|ENSG00000162599|Q12857-2|NFIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.1999206542969 3 413.199777 1236.5775 1.3599 0.00056193 -0.88467 -0.00036555 0.47527 0.00019638 413.1992862014568 37.077 0.57826 32.793 32.524 33.102 -4.2835 99 35 3 0 0 0 0.67922 1 21569 21569 2.8433 0.4085 1 47259000 + 61569 21662 41135 42059 71680 71680 -0.0313238122457733 STVISHGF 8 Unmodified _STVISHGF_ 0 0 0 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.218505859375 2 424.21906 846.423567 -0.44456 -0.00018859 -0.033552 -1.4233E-05 -0.47811 -0.00020282 424.2188688332073 29.61 0.17406 29.61 29.528 29.702 0 19 12 2 0 0 0 0.37649 1 15327 15327 46.921 6.4723 1 4469600 61570 9880 41136 42060 71681 71681 -0.005787461994259502 STVISHGF 8 Unmodified _STVISHGF_ 0 0 0 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.2187805175781 2 424.21906 846.423567 NaN NaN NaN NaN NaN NaN NaN 29.546 1 29.466 28.966 29.966 -0.080429 0 0 0 0.40668 1 15295 15295 53.576 9.1686 1 61571 9880 41136 42060 71682 71682 -0.005787461994259502 STVISHGF 8 Unmodified _STVISHGF_ 0 0 0 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 ENSG00000196900|ENST00000357147|TEX43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2196044921875 2 424.21906 846.423567 0.71638 0.0003039 0.70191 0.00029776 1.4183 0.00060167 424.21953925837647 32.948 0.35413 29.092 28.904 29.259 -3.8562 35 21 2 0 0 0 0.46494 2 18856 18856;18934 38.151 4.0487 1 49010000 61572 9880 41136 42060 71683;71684 71683 -0.005787461994259502 STVLTRIKI 9 Unmodified _STVLTRIKI_ 0 0 0 REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2672729492188 2 515.834591 1029.65463 0.6532 0.00033694 -1.2137 -0.00062607 -0.5605 -0.00028913 515.8341416560378 47.704 0.16317 47.666 47.62 47.783 -0.038647 10 7 2 0 0 0 0.19205 1 25697 25697 14.838 0 1 2375600 + 61573 29665 41137 42061 71685 71685 0.140988817824109 STVQLDNEKEK 11 Unmodified _STVQLDNEKEK_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MSMS AL20221201_MKP_PDAC_01 4 430.8887634277344 3 430.88938 1289.64631 NaN NaN NaN NaN NaN NaN NaN 24.582 1 21.699 21.199 22.199 -2.8831 0 0 0 0.81193 1 13394 13394 6.2344 0.45093 1 + 61574 19463 41138 42062 71686 71686 0.01307238284448431 STVRKILCSN 10 Unmodified _STVRKILCSN_ 0 0 0 REV__FASTKD1|p.A397Cfs*4|1|0.27|ENSG00000138399|chr2:169555149-169555150|-/A|frameshift_variant REV__FASTKD1|p.A397Cfs*4|1|0.27|ENSG00000138399|chr2:169555149-169555150|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8101806640625 2 560.81079 1119.60703 0.8289 0.00046485 -3.1475 -0.0017652 -2.3186 -0.0013003 560.8089100243031 75.636 0.23554 75.159 75.041 75.276 -0.47714 17 10 2 0 0 0 0.67046 1 41398 41398 6.1918 1.2948 1 913850 + 61575 20330 41139 42063 71687 71687 0.052008595199367846 STWCRRRPTSL 11 Unmodified _STWCRRRPTSL_ 0 0 0 REV__ENST00000327697.10_1_3:49744311-49750014:+|nuORF REV__ENST00000327697.10_1_3:49744311-49750014:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.9080200195312 3 454.906822 1361.69864 0.89175 0.00040566 1.8167 0.00082644 2.7085 0.0012321 454.90748872151255 22.169 0.21417 19.435 19.291 19.505 -2.7348 17 11 2 0 0 0 0.6889 1 11922 11922 2.4348 0 1 1443500 + 61576 25572 41140 42064 71688 71688 0.03225542937116188 STWHLWLESP 10 Unmodified _STWHLWLESP_ 0 0 0 ENST00000482320.5_1_7:128658104-128681743:-|nuORF ENST00000482320.5_1_7:128658104-128681743:-|nuORF ENST00000482320.5_1_7:128658104-128681743:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.80126953125 2 628.308938 1254.60332 0.75722 0.00047577 0.10973 6.8944E-05 0.86695 0.00054471 628.3083829906118 52.595 0.65763 52.536 52.328 52.985 -0.058918 55 32 2 0 0 0 0.22811 1 28445 28445 14.838 4.0143 1 3162900 61577 14101 41141 42065 71689 71689 -0.0137948698229593 STWRDPQDE 9 Unmodified _STWRDPQDE_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2451171875 2 567.246535 1132.47852 0.2332 0.00013228 -1.4943 -0.00084763 -1.2611 -0.00071535 567.2458935069245 61.786 0.48829 61.786 61.529 62.018 0 56 21 3 0 0 0 0.41742 2 34379 34379;34487 11.64 0.81637 1 36224000 61578 9381 41142 42066 71690;71691 71690 -0.08242404189468289 STWRDPQDE 9 Unmodified _STWRDPQDE_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 567.246535 1132.47852 0.88982 0.00050475 -0.47997 -0.00027226 0.40985 0.00023249 567.2465365991541 62.324 0.29448 61.836 61.681 61.976 -0.48764 0.025138 0.00089949 NaN 11.64 25 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1582900 61579 9381 41142 42066 -0.08242404189468289 STYCRVSL 8 Unmodified _STYCRVSL_ 0 0 0 REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF REV__ENST00000475941.1_1_22:20096259-20097628:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.2469787597656 2 464.731477 927.448402 NaN NaN NaN NaN NaN NaN NaN 26.565 1 23.614 23.114 24.114 -2.9511 0 0 0 0.94061 1 14654 14654 12.532 2.3482 1 + 61580 27584 41143 42067 71692 71692 -0.018224343883503025 SVADEPPL 8 Unmodified _SVADEPPL_ 0 0 0 REV__ENST00000311277.8_1_4:156298010-156298103:-|nuORF REV__ENST00000311277.8_1_4:156298010-156298103:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.2136840820312 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 17.76 1 15.173 14.673 15.673 -2.5866 0 0 0 0.97444 1 9315 9315 2.5775 0 1 + 61581 25425 41144 42068 71693 71693 -0.01289872156189631 SVADFLLVY 9 Unmodified _SVADFLLVY_ 0 0 0 ENSG00000211448|ENST00000438257|DIO2;nc|ENSG00000211448|Q92813-2|DIO2 ENSG00000211448|ENST00000438257|DIO2 ENSG00000211448|ENST00000438257|DIO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7791137695312 2 513.778951 1025.54335 0.060638 3.1155E-05 0.87405 0.00044907 0.93468 0.00048022 513.779341341806 69.119 0.343 68.638 68.465 68.808 -0.48071 34 14 3 0 0 0 0.30562 1 37742 37742 16.942 0 1 1765400 61582 10406 41145 42069 71694 71694 0.03159822354473363 SVAEVQEQY 9 Unmodified _SVAEVQEQY_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7483520507812 2 526.748379 1051.4822 1.2306 0.00064824 -0.64004 -0.00033714 0.5906 0.0003111 526.7479935122136 37.708 0.3151 33.339 33.201 33.516 -4.3689 29 18 2 0 0 0 0.039985 1 22170 22170 49.933 25.912 1 8760600 61583 10217 41146 42070 71695 71695 -0.0414773441559646 SVAEYGFTWFM 11 Unmodified _SVAEYGFTWFM_ 0 0 0 REV__nc|ENSG00000240583|P29972-3|AQP1 REV__nc|ENSG00000240583|P29972-3|AQP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 669.297607421875 2 669.297181 1336.57981 -0.47489 -0.00031784 -1.489 -0.00099657 -1.9639 -0.0013144 669.2961949464369 35.282 0.29023 35.282 35.11 35.4 0 36 14 3 0 0 0 0.37677 1 18618 18618 22.736 0 1 7228100 + 61584 29965 41147 42071 71696 71696 -0.07501668811141826 SVAEYGFTWFM 11 Unmodified _SVAEYGFTWFM_ 0 0 0 REV__nc|ENSG00000240583|P29972-3|AQP1 REV__nc|ENSG00000240583|P29972-3|AQP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.2960815429688 2 669.297181 1336.57981 -0.39228 -0.00026255 -1.2987 -0.00086921 -1.691 -0.0011318 669.2964576068837 35.497 0.47599 35.274 34.917 35.393 -0.2224 49 21 4 0 0 0 0.37677 2 18531 18531;18631 22.736 10.496 1 14038000 + 61585 29965 41147 42071 71697;71698 71697 -0.07501668811141826 SVAEYGFTWFM 11 Unmodified _SVAEYGFTWFM_ 0 0 0 REV__nc|ENSG00000240583|P29972-3|AQP1 REV__nc|ENSG00000240583|P29972-3|AQP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 669.297181 1336.57981 -0.47489 -0.00031784 -1.489 -0.00099657 -1.9639 -0.0013144 669.2961949464369 35.282 0.29023 35.282 35.11 35.4 0 0.0039591 -0.00014889 NaN 22.736 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 7228100 + 61586 29965 41147 42071 -0.07501668811141826 SVAEYGFTWFM 11 Unmodified _SVAEYGFTWFM_ 0 0 0 REV__nc|ENSG00000240583|P29972-3|AQP1 REV__nc|ENSG00000240583|P29972-3|AQP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 669.297181 1336.57981 -0.39228 -0.00026255 -1.2987 -0.00086921 -1.691 -0.0011318 669.2964576068837 35.497 0.47599 35.274 34.917 35.393 -0.2224 -0.0039591 0.00010583 NaN 22.736 49 21 4 NaN NaN NaN NaN 0 NaN NaN 0 14038000 + 61587 29965 41147 42071 -0.07501668811141826 SVAGHVEVY 9 Unmodified _SVAGHVEVY_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7430725097656 2 480.742899 959.471246 0.20044 9.6361E-05 0.24564 0.00011809 0.44608 0.00021445 480.74306152614014 31.206 0.24822 31.206 31.091 31.339 0 37 11 4 0 0 0 0.019303 1 16216 16216 64.236 11.968 1 8906200 61588 7921 41148 42072 71699 71699 -0.010110919992484924 SVAGHVEVY 9 Unmodified _SVAGHVEVY_ 0 0 0 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 ENSG00000169871|ENST00000306085|TRIM56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.74365234375 2 480.742899 959.471246 0.89255 0.00042909 -0.65091 -0.00031292 0.24164 0.00011617 480.74255960224804 35.545 0.39552 31.352 31.188 31.584 -4.1928 58 24 3 0 0 0 0.019303 2 20598 20598;20735 64.236 18.215 1 27989000 61589 7921 41148 42072 71700;71701 71700 -0.010110919992484924 SVAIFELIRKK 11 Unmodified _SVAIFELIRKK_ 0 0 0 REV__nc|ENSG00000196365|P36776-3|LONP1 REV__nc|ENSG00000196365|P36776-3|LONP1 MSMS AL20221201_MKP_PDAC_01 4 652.4119873046875 2 652.408455 1302.80236 NaN NaN NaN NaN NaN NaN NaN 105.02 1 98.848 98.348 99.348 -6.1757 0 0 0 0.88164 1 70320 70320 8.1555 1.0538 1 + 61590 23821 41149 42073 71702 71702 0.1630677331638708 SVAILGAC 8 Unmodified _SVAILGAC_ 0 0 0 REV__ENSG00000154646|ENST00000284885|TMPRSS15 REV__ENSG00000154646|ENST00000284885|TMPRSS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.19921875 2 367.199282 732.384011 0.75165 0.00027601 -0.74372 -0.00027309 0.007936 2.9141E-06 367.1989243033795 49.594 0.23679 49.202 49.077 49.313 -0.3923 19 11 2 0 0 0 0.80676 1 26649 26649 2.5775 1.7838 1 3088500 + 61591 21237 41150 42074 71703 71703 0.0071141052549137385 SVAILGAC 8 Unmodified _SVAILGAC_ 0 0 0 REV__ENSG00000154646|ENST00000284885|TMPRSS15 REV__ENSG00000154646|ENST00000284885|TMPRSS15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 367.199282 732.384011 0.75165 0.00027601 -0.74372 -0.00027309 0.007936 2.9141E-06 367.1989243033795 49.594 0.23679 49.202 49.077 49.313 -0.3923 0.011008 -6.1747E-05 NaN 2.5775 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3088500 + 61592 21237 41150 42074 0.0071141052549137385 SVALYLVRQL 10 Unmodified _SVALYLVRQL_ 0 0 0 ENSG00000105229|ENST00000262971|PIAS4 ENSG00000105229|ENST00000262971|PIAS4 ENSG00000105229|ENST00000262971|PIAS4 MSMS AL20221201_MKP_PDAC_01 4 387.9054565429688 3 387.904524 1160.69174 NaN NaN NaN NaN NaN NaN NaN 88.972 1 82.796 82.296 83.296 -6.1757 0 0 0 0.3465 1 58716 58716 23.801 0.011284 1 61593 2291 41151 42075 71704 71704 0.11782553328202994 SVATPPVPTY 10 Unmodified _SVATPPVPTY_ 0 0 0 REV__nc|ENSG00000144642|Q6XE24-3|RBMS3 REV__nc|ENSG00000144642|Q6XE24-3|RBMS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.224365234375 1 1031.54079 1030.53351 0.20272 0.00020911 3.702 0.0038187 3.9047 0.0040279 1032.5513365726717 54.143 0.21961 54.143 54.051 54.271 0 15 9 2 0 0 0 0.67459 1 30020 30020 5.7319 0.97584 1 3865500 + 61594 20721 41152 42076 71705 71705 0.019466343491103544 SVAVVEAECE 10 Unmodified _SVAVVEAECE_ 0 0 0 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 ENSG00000197106|ENST00000331565|SLC6A17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7815551757812 2 518.23679 1034.45903 -0.27145 -0.00014068 1.3751 0.00071263 1.1037 0.00057196 518.2374099712258 28.849 0.27896 28.849 28.723 29.002 0 25 13 2 0 0 0 0.22811 1 14980 14980 14.838 6.9281 1 6441300 61595 9908 41153 42077 71706 71706 -0.05682496524582348 SVAYYASPPH 10 Unmodified _SVAYYASPPH_ 0 0 0 REV__ENSG00000196878|ENST00000356082|LAMB3 REV__ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.261474609375 2 546.261456 1090.50836 -0.42157 -0.00023029 0.092317 5.0429E-05 -0.32925 -0.00017986 546.2615673551736 55.94 0.58605 55.872 55.569 56.155 -0.068741 73 30 3 0 0 0 0.52888 1 30492 30492 14.838 0.93222 1 33769000 + 61596 23879 41154 42078 71707 71707 -0.03327420453479135 SVCERTGRF 9 Unmodified _SVCERTGRF_ 0 0 0 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1751708984375 3 352.174797 1053.50256 1.1192 0.00039415 0.43906 0.00015463 1.5582 0.00054878 352.1750253554556 36.417 0.29112 32.224 32.067 32.358 -4.1928 20 17 2 0 0 0 0.41742 1 21269 21269 7.609 0.50723 1 13550000 61597 8802 41155 42079 71708 71708 -0.02204842236778859 SVCERTGRF 9 Unmodified _SVCERTGRF_ 0 0 0 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 ENSG00000179044|ENST00000314586|EXOC3L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.174797 1053.50256 -0.26564 -9.3552E-05 0.96486 0.0003398 0.69921 0.00024625 352.1751599112902 32.338 0.20306 32.368 32.237 32.44 0.029743 0.02172 9.5355E-05 NaN 7.609 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 4718300 61598 8802 41155 42079 -0.02204842236778859 SVCHILLLV 9 Carbamidomethyl (C) _SVC(Carbamidomethyl (C))HILLLV_ SVC(1)HILLLV SVC(42)HILLLV 0 1 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8;nc|ENSG00000167447|Q8ND04-3|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3087158203125 2 527.309895 1052.60524 0.3136 0.00016536 -1.4809 -0.00078088 -1.1673 -0.00061552 527.3094092394266 78.331 0.24912 78.383 78.327 78.576 0.052444 24 10 3 0 0 0 0.06187 1 43275 43275 42.095 13.608 1 4062200 61599 7609 41156 42080 71709 71709 738 0.08103850501970555 SVDDTIVAL 9 Unmodified _SVDDTIVAL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.49365234375 1 932.493504 931.486227 0.31203 0.00029096 0.45395 0.0004233 0.76598 0.00071427 932.4937867257099 65.43 0.35014 65.43 65.247 65.597 0 34 13 4 0 0 0 0.042911 2 36530 36434;36530 48.346 5.137 1 5091500 61600 2734 41157 42081 71710;71711 71711 0.01774355078100598 SVDDTIVAL 9 Unmodified _SVDDTIVAL_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7503356933594 2 466.75039 931.486227 0.41975 0.00019592 0.19949 9.3111E-05 0.61923 0.00028903 466.75091766771453 65.461 0.25531 65.461 65.272 65.528 0 15 9 2 0 0 0 0.078417 1 36493 36493 38.151 17.28 1 1359800 61601 2734 41157 42081 71712 71712 0.01774355078100598 SVDGAYNESI 10 Unmodified _SVDGAYNESI_ 0 0 0 REV__ENSG00000170631|ENST00000394909|ZNF16 REV__ENSG00000170631|ENST00000394909|ZNF16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2689819335938 2 527.738011 1053.46147 -0.63437 -0.00033478 0.47399 0.00025014 -0.16038 -8.4638E-05 527.7380634103826 32.794 0.43031 32.794 32.618 33.049 0 31 21 2 0 0 0 0.22149 1 17283 17283 10.074 0 1 3006100 + 61602 22497 41158 42082 71713 71713 -0.06312324795294444 SVDGSPTTAF 10 Unmodified _SVDGSPTTAF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.4517211914062 1 981.452367 980.445091 -0.47576 -0.00046694 0.18043 0.00017709 -0.29533 -0.00028985 981.4520319241974 41.444 0.31212 41.444 41.261 41.573 0 23 15 2 0 0 0 0.0014571 1 22283 22283 111.29 67.429 1 8696900 61603 6726 41159 42083 71714 71714 -0.04591405961389228 SVDGSPTTAF 10 Unmodified _SVDGSPTTAF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2292175292969 2 491.229822 980.445091 -0.36745 -0.0001805 -0.079355 -3.8982E-05 -0.44681 -0.00021949 491.229600241212 41.483 0.38408 41.483 41.261 41.645 0 39 19 3 0 0 0 0.42068 1 22322 22322 20.454 1.1966 1 18663000 61604 6726 41159 42083 71715 71715 -0.04591405961389228 SVDGSPTTAF 10 Unmodified _SVDGSPTTAF_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 981.4534912109375 1 981.452367 980.445091 0.96021 0.0009424 0.050049 4.9121E-05 1.0103 0.00099152 981.4519314032032 48.474 0.34992 43.077 42.89 43.24 -5.3961 32 20 2 0 0 0 0.0022539 2 30152 30152;30283 107.19 51.01 1 14560000 61605 6726 41159 42083 71716;71717 71716 -0.04591405961389228 SVDKSVIVY 9 Unmodified _SVDKSVIVY_ 0 0 0 ENSG00000196151|ENST00000359774|WDSUB1 ENSG00000196151|ENST00000359774|WDSUB1 ENSG00000196151|ENST00000359774|WDSUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2824401855469 2 505.281857 1008.54916 0.20822 0.00010521 -0.5821 -0.00029412 -0.37388 -0.00018891 505.2817279632922 40.42 0.30861 40.42 40.257 40.565 0 40 15 3 0 0 0 0.044011 2 21691 21691;21802 47.749 23.728 1 19403000 61606 9769 41160 42084 71718;71719 71718 0.0452292086615671 SVDKSVIVY 9 Unmodified _SVDKSVIVY_ 0 0 0 ENSG00000196151|ENST00000359774|WDSUB1 ENSG00000196151|ENST00000359774|WDSUB1 ENSG00000196151|ENST00000359774|WDSUB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2822570800781 2 505.281857 1008.54916 0.64926 0.00032806 0.04207 2.1257E-05 0.69133 0.00034932 505.28209319527474 45.966 0.41589 41.011 40.774 41.19 -4.9549 41 27 2 0 0 0 0.012668 2 28400 28258;28400 72.968 25.672 1 30972000 61607 9769 41160 42084 71720;71721 71721 0.0452292086615671 SVDLLLLEQVN 11 Unmodified _SVDLLLLEQVN_ 0 0 0 REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.9035034179688 3 414.902849 1241.68672 -0.37904 -0.00015727 1.0266 0.00042593 0.64754 0.00026867 414.90325795681406 36.556 0.3338 36.577 36.393 36.727 0.021545 24 15 2 0 0 0 0.68427 1 19421 19421 2.6312 1.3016 1 5911300 + 61608 26541 41161 42085 71722 71722 0.07554204674897846 SVDSNLFVY 9 Unmodified _SVDSNLFVY_ 0 0 0 nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2553100585938 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 70.805 1 70.805 70.305 71.305 0 0 0 0 0.7453 1 39448 39448 7.9102 0 1 61609 2177 41162 42086 71723 71723 -0.022422425476179342 SVDYRHSETS 10 Unmodified _SVDYRHSETS_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.7667846679688 2 590.765091 1179.51563 -0.25623 -0.00015137 2.1338 0.0012606 1.8776 0.0011092 590.7661139179053 31.565 0.1479 31.595 31.544 31.692 0.030106 10 6 2 0 0 0 0.66569 1 16562 16562 6.7232 0.99131 1 1398300 61610 678 41163 42087 71724 71724 -0.06694732643700263 SVDYRHSETS 10 Unmodified _SVDYRHSETS_ 0 0 0 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 ENSG00000047188|ENST00000161863|YTHDC2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 590.765091 1179.51563 1.0214 0.00060338 2.7127 0.0016026 3.7341 0.002206 590.7668572515563 35.993 0.422 31.801 31.678 32.1 -4.1928 0.1028 0.00025528 NaN 6.7232 30 25 2 NaN NaN NaN NaN 0 NaN NaN 0 5082600 61611 678 41163 42087 -0.06694732643700263 SVEAFEKHYLD 11 Unmodified _SVEAFEKHYLD_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.3220825195312 2 669.322242 1336.62993 0.38644 0.00025865 0.14245 9.5344E-05 0.52889 0.000354 669.3222393228941 52.779 0.25731 52.327 52.219 52.476 -0.45173 27 12 3 0 0 0 0.39949 1 28547 28547 21.537 4.4241 1 3668900 61612 6704 41164 42088 71725 71725 -0.02491842881613593 SVECYDSF 8 Unmodified _SVECYDSF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 475.7329711914062 2 475.184026 948.353498 0.7519 0.00035729 2.2674 0.0010774 3.0193 0.0014347 475.1851827466671 69.475 0.31272 63.3 63.174 63.487 -6.1757 22 16 2 0 0 0 8.7369 1 45328 45328 2.3027 0 1 19210000 61613 3064 41165 42089 71726 71726 -0.12274412650208433 SVEESVLLY 9 Unmodified _SVEESVLLY_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;ENST00000444273.6_1_6:56954967-57015704:+|nuORF;ZNF451|p.K448Efs*7|1|0.18|ENSG00000112200|chr6:57147419-57147420|-/A|frameshift_variant nc|ENSG00000112200|Q9Y4E5-2|ZNF451 nc|ENSG00000112200|Q9Y4E5-2|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7710571289062 2 519.771322 1037.52809 0.38518 0.0002002 -0.20163 -0.0001048 0.18355 9.5402E-05 519.7710376273118 65.914 0.29603 65.914 65.718 66.014 0 35 15 3 0 0 0 0.023164 1 36705 36705 60.39 18.295 1 4609800 61614 2868 41166 42090 71727 71727 0.0108291076662681 SVEITKLQ 8 Unmodified _SVEITKLQ_ 0 0 0 nc|ENSG00000138768|O60763-2|USO1;ENSG00000138768|ENST00000514213|USO1 nc|ENSG00000138768|O60763-2|USO1 nc|ENSG00000138768|O60763-2|USO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2709045410156 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 39.084 1 39.084 38.584 39.584 0 0 0 0 0.97444 1 20923 20923 4.756 0 1 61615 16226 41167 42091 71728 71728 0.06134651694674176 SVENLVTVL 9 Unmodified _SVENLVTVL_ 0 0 0 REV__ENST00000486339.6_1_16:2155757-2157078:-|nuORF REV__ENST00000486339.6_1_16:2155757-2157078:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2814331054688 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 84.527 1 84.027 83.527 84.527 -0.49961 0 0 0 0.33856 1 46255 46255 23.148 6.2061 1 + 61616 27801 41168 42092 71729 71729 0.06178920866148019 SVENYTLTI 9 Unmodified _SVENYTLTI_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2687377929688 2 520.268947 1038.52334 0.55013 0.00028621 -0.29392 -0.00015292 0.25621 0.0001333 520.268874867436 67.501 0.26533 67.501 67.317 67.583 0 29 11 3 0 0 0 0.19127 1 37612 37612 24.021 0.87215 1 3566600 61617 10446 41169 42093 71730 71730 0.005620266238793192 SVENYTLTI 9 Unmodified _SVENYTLTI_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000563908.1_1_15:72647792-72668286:-|nuORF;ENST00000568777.5_1_15:72647792-72649010:-|nuORF;ENST00000569509.5_1_15:72643558-72668681:-|nuORF ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.268947 1038.52334 0.56981 0.00029646 -2.3376 -0.0012162 -1.7678 -0.00091974 520.7695734095666 68.021 0.16133 67.539 67.432 67.594 -0.48218 0.018713 -0.0016647 NaN 24.021 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1378600 61618 10446 41169 42093 0.005620266238793192 SVEPELSNAE 10 Unmodified _SVEPELSNAE_ 0 0 0 ENST00000328914.4_1_7:4803200-4803701:+|nuORF ENST00000328914.4_1_7:4803200-4803701:+|nuORF ENST00000328914.4_1_7:4803200-4803701:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7499389648438 2 537.751118 1073.48768 NaN NaN NaN NaN NaN NaN NaN 26.938 1 26.967 26.467 27.467 0.028664 0 0 0 0.7417 1 13988 13988 14.838 6.9281 1 61619 11839 41170 42094 71731 71731 -0.046120556238065546 SVEPPFAL 8 Unmodified _SVEPPFAL_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 859.4562377929688 1 859.455996 858.448719 -0.074723 -6.4221E-05 0.5318 0.00045706 0.45708 0.00039284 859.4563607407331 85.213 0.76038 79.038 78.735 79.495 -6.1757 147 46 4 0 0 0 8.7369 1 56311 56311 63.563 63.563 1 323110000 61620 16110 41171 42095 71732 71732 0.013833086031354469 SVERESAPEAG 11 Unmodified _SVERESAPEAG_ 0 0 0 REV__nc|ENSG00000113889|P01042-3|KNG1 REV__nc|ENSG00000113889|P01042-3|KNG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2691650390625 2 566.267467 1130.52038 NaN NaN NaN NaN NaN NaN NaN 45.143 1 45.115 44.615 45.615 -0.028011 0 0 0 0.43177 1 24239 24239 40.239 18.702 1 + 61621 29582 41172 42096 71733 71733 -0.03965848500956781 SVESYRWQL 9 Unmodified _SVESYRWQL_ 0 0 0 REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF;REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 REV__nc|ENSG00000185189|Q9NSY0-4|NRBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2964477539062 2 584.293288 1166.57202 0.6429 0.00037564 0.9234 0.00053954 1.5663 0.00091518 584.29376248948 43.315 1.5789 38.55 38.197 39.775 -4.7648 415 107 6 0 0 0 0.12424 1 26892 26892 30.637 5.2372 1 6745599999.999999 + 61622 23481;29849 41173 42097 71734 71734 -0.004600600163939816 SVFDMKHSF 9 Unmodified _SVFDMKHSF_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5079956054688 3 366.507665 1096.50117 0.79798 0.00029246 1.398 0.0005124 2.196 0.00080486 366.5084155415126 12.029 0.05562 9.5472 9.5122 9.5678 -2.482 24 12 3 0 0 0 0.55144 1 6063 6063 2.4985 0.59211 1 1690900 61623 5664 41174 42098 71735 71735 -0.043224763255466314 SVFDTADYTF 10 Unmodified _SVFDTADYTF_ 0 0 0 nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.25537109375 2 583.256037 1164.49752 0.025454 1.4846E-05 -0.048746 -2.8431E-05 -0.023291 -1.3585E-05 583.255939563833 66.153 0.31377 65.67 65.478 65.792 -0.48323 39 16 3 0 0 0 0.44373 1 36051 36051 19.257 3.4098 1 15917000 61624 1509 41175 42099 71736 71736 -0.07814867618435528 SVFDTADYTF 10 Unmodified _SVFDTADYTF_ 0 0 0 nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.256037 1164.49752 0.025454 1.4846E-05 -0.048746 -2.8431E-05 -0.023291 -1.3585E-05 583.255939563833 66.153 0.31377 65.67 65.478 65.792 -0.48323 0.0075035 0.00010782 NaN 19.257 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 15917000 61625 1509 41175 42099 -0.07814867618435528 SVFDTADYTF 10 Unmodified _SVFDTADYTF_ 0 0 0 nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 583.256037 1164.49752 1.2417 0.00072425 -0.37807 -0.00022051 0.86366 0.00050374 583.2559821288203 65.655 0.13491 65.655 65.583 65.718 7.6294E-06 -0.0075035 -0.00027634 NaN 19.257 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3430900 61626 1509 41175 42099 -0.07814867618435528 SVFEDSNVY 9 Unmodified _SVFEDSNVY_ 0 0 0 ENSG00000143499|ENST00000366957|SMYD2;ENST00000491455.5_1_1:214454597-214505536:+|nuORF ENSG00000143499|ENST00000366957|SMYD2 ENSG00000143499|ENST00000366957|SMYD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.23486328125 2 530.235104 1058.45566 0.26891 0.00014258 0.34963 0.00018539 0.61854 0.00032797 530.2352901573544 49.027 0.28416 49.027 48.89 49.174 0 32 13 3 0 0 0 0.10734 1 26925 26925 32.305 11.852 1 5878200 61627 5521 41176 42100 71737 71737 -0.07123423306939003 SVFEKYFQF 9 Unmodified _SVFEKYFQF_ 0 0 0 ENSG00000163466|ENST00000315717|ARPC2;ENST00000465395.5_1_2:219082193-219103574:+|nuORF ENSG00000163466|ENST00000315717|ARPC2 ENSG00000163466|ENST00000315717|ARPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.7952270507812 2 597.795132 1193.57571 -0.024463 -1.4624E-05 1.6519 0.0009875 1.6274 0.00097287 597.7956721134805 77.076 0.28699 77.126 76.985 77.272 0.05011 29 11 4 0 0 0 0.12424 1 42553 42553 30.637 15.798 1 2500400 61628 6996 41177 42101 71738 71738 -0.013333902425301858 SVFEKYFQF 9 Unmodified _SVFEKYFQF_ 0 0 0 ENSG00000163466|ENST00000315717|ARPC2;ENST00000465395.5_1_2:219082193-219103574:+|nuORF ENSG00000163466|ENST00000315717|ARPC2 ENSG00000163466|ENST00000315717|ARPC2 MSMS AL20221201_MKP_PDAC_01 4 597.7952880859375 2 597.795132 1193.57571 NaN NaN NaN NaN NaN NaN NaN 96.12 1 89.944 89.444 90.444 -6.1757 0 0 0 0.032808 1 63684 63684 65.235 30.833 1 61629 6996 41177 42101 71739 71739 -0.013333902425301858 SVFFFLFSF 9 Unmodified _SVFFFLFSF_ 0 0 0 ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF ENST00000484094.1_1_2:103414244-103431261:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7926635742188 2 570.791861 1139.56917 1.297 0.00074034 -0.58223 -0.00033233 0.71481 0.00040801 570.7913448331508 90.866 0.77103 84.691 84.257 85.028 -6.1757 92 45 4 0 0 0 0.070838 1 60111 60111 39.957 5.8549 1 23232000 61630 14145 41178 42102 71740 71740 0.004967165967627807 SVFHRKNF 8 Unmodified _SVFHRKNF_ 0 0 0 ENST00000483174.1_1_11:132202315-132205037:+|nuORF ENST00000483174.1_1_11:132202315-132205037:+|nuORF ENST00000483174.1_1_11:132202315-132205037:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1035.05615234375 1 1034.55302 1033.54575 0.2085 0.0002157 -0.72932 -0.00075452 -0.52082 -0.00053882 1034.5526159110173 51.294 0.35015 51.294 51.15 51.5 0 30 15 3 0 0 0 8.7369 1 28421 28421 5.2307 0.90143 1 4950200 61631 14124 41179 42103 71741 71741 0.03031715602787699 SVFKKFNW 8 Unmodified _SVFKKFNW_ 0 0 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MSMS AL20221201_MKP_PDAC_01 4 352.5281372070312 3 352.527277 1054.56 NaN NaN NaN NaN NaN NaN NaN 80.724 1 74.548 74.048 75.048 -6.1757 0 0 0 0.75749 1 52965 52965 20.415 4.5674 1 61632 6242 41180 42104 71742 71742 0.034903680310890195 SVFPNDSPVQY 11 Unmodified _SVFPNDSPVQY_ 0 0 0 REV__HHIPL2|p.R396Q|1|0.26|ENSG00000143512|chr1:222540273-222540273|C/T|missense_variant REV__HHIPL2|p.R396Q|1|0.26|ENSG00000143512|chr1:222540273-222540273|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.79736328125 2 626.79586 1251.57717 -0.15932 -9.9859E-05 1.9047 0.0011939 1.7454 0.001094 626.7965222102005 23.398 0.18197 23.398 23.307 23.489 0 13 8 2 0 0 0 0.71036 1 11923 11923 3.2813 0.28607 1 654300 + 61633 29382 41181 42105 71743 71743 -0.038558009444159325 SVFQDQHL 8 Unmodified _SVFQDQHL_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2412719726562 2 487.240524 972.466495 0.99776 0.00048615 0.95034 0.00046305 1.9481 0.0009492 487.24074622731086 58.006 0.45382 57.94 57.775 58.229 -0.066036 32 22 2 0 0 0 0.80143 1 31694 31694 5.7604 0 1 4767600 61634 5814 41182 42106 71744 71744 -0.020839761420006653 SVFSSLYSYF 10 Unmodified _SVFSSLYSYF_ 0 0 0 nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-3|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2852783203125 2 600.284597 1198.55464 -0.4834 -0.00029018 -0.060902 -3.6559E-05 -0.5443 -0.00032674 600.2843781785382 93.128 0.61499 86.953 86.657 87.272 -6.1757 70 44 2 0 0 0 0.42068 2 61574 61434;61574 20.454 7.4112 1 19489000 61635 7156 41183 42107 71745;71746 71746 -0.036694003420507215 SVFVPPGH 8 Unmodified _SVFVPPGH_ 0 0 0 REV__nc|ENSG00000019485|Q9NQV5|PRDM11;REV__ENSG00000019485|ENST00000683152|PRDM11 REV__ENSG00000019485|ENST00000683152|PRDM11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4505615234375 1 839.441015 838.433738 0.87343 0.00073319 0.29527 0.00024786 1.1687 0.00098106 839.4409806402103 54.865 0.50297 49 48.746 49.249 -5.8653 67 30 3 0 0 0 0.77907 1 34749 34749 10.183 0.83596 1 43413000 + 61636 29484;17101 41184 42108 71747 71747 0.00805861525805085 SVFYILWLPY 10 Unmodified _SVFYILWLPY_ 0 0 0 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.8519287109375 2 650.85245 1299.69035 -0.069478 -4.522E-05 -2.7954 -0.0018194 -2.8649 -0.0018646 650.8510216830061 38.873 0.2358 38.586 38.415 38.651 -0.28687 26 10 3 0 0 0 0.60623 1 20456 20456 10.824 2.0785 1 2304800 61637 9656 41185 42109 71748 71748 0.052489192394432393 SVGAPQVPP 9 Unmodified _SVGAPQVPP_ 0 0 0 REV__ENSG00000196663|ENST00000359520|TECPR2 REV__ENSG00000196663|ENST00000359520|TECPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2349548339844 2 426.23471 850.454868 0.84693 0.00036099 -0.55559 -0.00023681 0.29134 0.00012418 426.23459330456865 42.785 0.36102 42.785 42.586 42.947 0 38 18 3 0 0 0 0.070838 1 23244 23244 39.957 3.9131 1 7993100 + 61638 23858 41186 42110 71749 71749 0.0236582683467077 SVGHLEGIA 9 Unmodified _SVGHLEGIA_ 0 0 0 REV__ENSG00000169856|ENST00000305901|ONECUT1 REV__ENSG00000169856|ENST00000305901|ONECUT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2599487304688 2 441.737617 881.460681 1.3569 0.0005994 2.0162 0.00089062 3.3731 0.00149 441.73789913999826 37.243 0.29173 32.96 32.81 33.102 -4.2835 19 17 2 0 0 0 0.18882 1 21885 21885 6.7232 1.4925 1 3991200 + 61639 22429 41187 42111 71750 71750 0.015209253463353889 SVGLELCHF 9 Unmodified _SVGLELCHF_ 0 0 0 REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7887268066406 2 502.747127 1003.4797 -0.89424 -0.00044958 1.3986 0.00070313 0.50434 0.00025355 502.7481386228615 36.287 0.20302 36.037 35.906 36.109 -0.2497 17 8 3 0 0 0 0.28047 1 18961 18961 18.135 5.6034 1 4112800 + 61640 22280 41188 42112 71751 71751 -0.02189861354270306 SVGLKRLRHA 10 Unmodified _SVGLKRLRHA_ 0 0 0 REV__ENST00000534797.5_1_11:503263-503554:-|nuORF REV__ENST00000534797.5_1_11:503263-503554:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.8534545898438 2 568.854181 1135.69381 0.33367 0.00018981 0.13019 7.4057E-05 0.46386 0.00026387 568.8542065379548 94.645 0.27092 94.645 94.491 94.762 0 35 22 2 0 0 0 0.72607 2 52266 52266;52362 0 0 1 453160 + 61641 28511 41189 42113 71752;71753 71752 0.13139026856674718 SVGLQWFTLK 10 Unmodified _SVGLQWFTLK_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.8311157226562 2 589.832049 1177.64954 0.29934 0.00017656 -0.019781 -1.1668E-05 0.27956 0.00016489 589.8321043405988 61.578 0.25627 61.545 61.415 61.671 -0.032787 28 12 3 0 0 0 0.38092 1 33592 33592 22.736 0 1 9169600 61642 8143 41190 42114 71754 71754 0.06782577919807409 SVGLQWFTLK 10 Unmodified _SVGLQWFTLK_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5570678710938 3 393.557125 1177.64954 0.15504 6.1018E-05 0.52835 0.00020794 0.68339 0.00026895 393.55734333403075 61.564 0.21453 61.531 61.415 61.629 -0.032787 25 10 3 0 0 0 0.44373 1 33603 33603 12.175 12.175 1 5410600 61643 8143 41190 42114 71755 71755 0.06782577919807409 SVGYRSVL 8 Unmodified _SVGYRSVL_ 0 0 0 ENST00000532122.5_1_11:44101033-44103652:+|nuORF;ENST00000527346.5_1_11:44101033-44105339:+|nuORF;ENSG00000110455|ENST00000263776|ACCS ENST00000532122.5_1_11:44101033-44103652:+|nuORF ENST00000532122.5_1_11:44101033-44103652:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7483825683594 2 440.747985 879.481417 0.83101 0.00036626 -0.8415 -0.00037089 -0.010492 -4.6244E-06 440.7475383374384 46.329 0.33714 46.329 46.186 46.523 0 28 15 3 0 0 0 0.46494 1 25319 25319 38.151 2.107 1 4091300 61644 2722 41191 42115 71756 71756 0.03685515726010635 SVHCAHVFTT 10 Unmodified _SVHCAHVFTT_ 0 0 0 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 ENSG00000111713|ENST00000261195|GYS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8440551757812 3 367.843048 1100.50731 1.2486 0.0004593 0.39373 0.00014483 1.6424 0.00060413 367.8433766721217 32.709 0.27744 28.852 28.732 29.01 -3.8562 26 14 2 0 0 0 0.64183 1 18689 18689 8.9762 4.5701 1 7941900 61645 2820 41192 42116 71757 71757 -0.038919580940500964 SVHPRQLLV 9 Unmodified _SVHPRQLLV_ 0 0 0 ENST00000367274.8_1_1:202304860-202311041:-|nuORF ENST00000367274.8_1_1:202304860-202311041:-|nuORF ENST00000367274.8_1_1:202304860-202311041:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.789306640625 2 524.816733 1047.61891 1.2781 0.00067079 -1.9332 -0.0010146 -0.65505 -0.00034378 524.8158677954448 37.624 0.43543 33.255 33.052 33.487 -4.3689 45 25 2 0 0 0 0.20572 1 22212 22212 10.074 3.3508 1 16930000 61646 12231 41193 42117 71758 71758 0.09700844325402613 SVHYLWKKWKK 11 Unmodified _SVHYLWKKWKK_ 0 0 0 ENSG00000232113|ENST00000417563|TEX50 ENSG00000232113|ENST00000417563|TEX50 ENSG00000232113|ENST00000417563|TEX50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 751.9371948242188 2 751.935171 1501.85579 NaN NaN NaN NaN NaN NaN NaN 19.695 1 19.695 19.195 20.195 0 0 0 0 0.94307 1 9868 9868 0.30703 0.03801 1 61647 10623 41194 42118 71759 71759 0.1249357081890139 SVIDHIHLI 9 Unmodified _SVIDHIHLI_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.8035888671875 2 523.803291 1045.59203 0.73868 0.00038692 -0.73617 -0.00038561 0.002517 1.3184E-06 523.8032087774407 60.807 0.16626 60.807 60.718 60.885 0 12 6 2 0 0 0 0.14602 1 33947 33947 28.487 11.545 1 534680 61648 3686 41195 42119 71760 71760 0.07105735714230832 SVIDHIHLI 9 Unmodified _SVIDHIHLI_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.803466796875 2 523.803291 1045.59203 -0.42347 -0.00022181 0.61509 0.00032219 0.19162 0.00010037 523.8035613078445 61.263 0.26616 60.774 60.635 60.901 -0.48932 18 12 2 0 0 0 0.010877 1 33358 33358 77.984 41.94 1 2406300 61649 3686 41195 42119 71761 71761 0.07105735714230832 SVIDHIHLISV 11 Unmodified _SVIDHIHLISV_ 0 0 0 ENSG00000123159|ENST00000393033|GIPC1;nc|ENSG00000123159|O14908-2|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 ENSG00000123159|ENST00000393033|GIPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5721435546875 3 411.571434 1231.69247 0.54481 0.00022423 0.040884 1.6827E-05 0.58569 0.00024105 411.5714669753485 67.581 0.2245 67.099 67.007 67.232 -0.48219 11 9 2 0 0 0 0.65846 1 36953 36953 6.6235 4.8812 1 1024400 61650 3686 41196 42120 71762 71762 0.0858934797722668 SVIEQILHY 9 Unmodified _SVIEQILHY_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.3009643554688 2 551.300581 1100.58661 0.69576 0.00038357 -0.07275 -4.0107E-05 0.62301 0.00034346 551.30089826891 74.106 0.39674 74.106 73.945 74.342 0 38 18 3 0 0 0 0.047196 1 41228 41228 46.021 9.9768 1 1463700 61651 402 41197 42121 71763 71763 0.04034012131774034 SVIEQILHY 9 Unmodified _SVIEQILHY_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3008422851562 2 551.300581 1100.58661 0.78841 0.00043465 0.091282 5.0324E-05 0.87969 0.00048497 551.3005303518421 74.528 0.39381 74.053 73.864 74.258 -0.47588 47 16 4 0 0 0 0.022193 2 40832 40736;40832 61.357 25.23 1 7822600 61652 402 41197 42121 71764;71765 71765 0.04034012131774034 SVIEQILHY 9 Unmodified _SVIEQILHY_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.299072265625 2 551.300581 1100.58661 1.223 0.00067425 -1.4601 -0.00080494 -0.23706 -0.00013069 551.3003494149357 94.431 0.60132 88.255 87.88 88.481 -6.1757 130 34 5 0 0 0 0.018301 1 62381 62381 65.235 21.377 1 86710000 61653 402 41197 42121 71766 71766 0.04034012131774034 SVIEQIVYV 9 Unmodified _SVIEQIVYV_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2982788085938 2 525.297507 1048.58046 0.46449 0.00024399 -1.9045 -0.0010004 -1.44 -0.00075644 525.2968938272378 76.935 0.31593 76.935 76.708 77.024 0 39 20 2 0 0 0 0.047196 2 42688 42688;42784 46.021 25.567 1 3000000 61654 1206 41198 42122 71767;71768 71767 0.05811493900228015 SVIEQIVYV 9 Unmodified _SVIEQIVYV_ 0 0 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2964477539062 2 525.297507 1048.58046 -0.65121 -0.00034208 -0.13409 -7.0439E-05 -0.7853 -0.00041252 525.2974292200105 77.406 0.2959 76.923 76.721 77.016 -0.4826 28 13 3 0 0 0 0.07916 1 42402 42402 37.974 11.09 1 3067400 61655 1206 41198 42122 71769 71769 0.05811493900228015 SVIEQLFFV 9 Unmodified _SVIEQLFFV_ 0 0 0 ENSG00000185551|ENST00000394166|NR2F2;nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;ENSG00000175745|ENST00000327111|NR2F1;ENST00000506162.1_1_5:92927828-92929545:+|nuORF ENSG00000185551|ENST00000394166|NR2F2 ENSG00000185551|ENST00000394166|NR2F2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.7920532226562 2 541.30005 1080.58555 0.73674 0.0003988 2.7131 0.0014686 3.4499 0.0018674 541.3013651402497 101.44 0.29869 95.262 95.163 95.461 -6.1757 23 15 3 0 0 0 0.047927 1 68128 68128 54.774 20.671 1 86401000 61656 9381 41199 42123 71770 71770 0.04847797762840855 SVIEQRTLH 9 Unmodified _SVIEQRTLH_ 0 0 0 REV__ENST00000553714.1_1_14:53110290-53113110:-|nuORF REV__ENST00000553714.1_1_14:53110290-53113110:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 541.7920532226562 2 541.80128 1081.58801 NaN NaN NaN NaN NaN NaN NaN 101.53 1 95.355 94.855 95.855 -6.1757 0 0 0 0.26667 1 68128 68128 26.884 2.8631 1 + 61657 23969 41200 42124 71771 71771 0.050476462205324424 SVIERDNRL 9 Unmodified _SVIERDNRL_ 0 0 0 ENSG00000283361|ENST00000636692|CFAP97D2 ENSG00000283361|ENST00000636692|CFAP97D2 ENSG00000283361|ENST00000636692|CFAP97D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.301513671875 2 551.304187 1100.59382 0.31616 0.0001743 4.2938 0.0023672 4.6099 0.0025415 551.3059178280571 74.203 0.35739 74.247 73.985 74.342 0.043983 25 15 2 0 0 0 0.39143 1 40843 40843 18.146 6.5061 1 3068500 61658 10952 41201 42125 71772 71772 0.04754744732167637 SVIGFNTYKF 10 Unmodified _SVIGFNTYKF_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8763732910156 3 392.541363 1174.60226 0.34085 0.0001338 0.3563 0.00013986 0.69715 0.00027366 392.54144243470813 46.575 0.26255 46.575 46.436 46.698 0 20 11 2 0 0 0 0.65282 1 25447 25447 4.7159 1.1289 1 2581100 + 61659 19400 41202 42126 71773 71773 0.02194298648782933 SVIGFNTYKF 10 Unmodified _SVIGFNTYKF_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5418395996094 3 392.541363 1174.60226 1.0227 0.00040143 -0.010922 -4.2875E-06 1.0117 0.00039715 392.54130806417464 46.551 0.38931 46.518 46.286 46.675 -0.033417 68 18 5 0 0 0 0.38092 1 25088 25088 14.957 0 1 73644000 + 61660 19400 41202 42126 71774 71774 0.02194298648782933 SVIGFNTYKF 10 Unmodified _SVIGFNTYKF_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.541748046875 3 392.541363 1174.60226 1.1572 0.00045426 0.1453 5.7034E-05 1.3025 0.00051129 392.5414104259968 74.995 2.2563 68.819 67.747 70.004 -6.1757 255 120 3 0 0 0 0.29752 6 48825 48825;48951;49080;49345;49475;49601 23.801 8.8439 1 24641000 + 61661 19400 41202 42126 71775;71776;71777;71778;71779;71780 71775 0.02194298648782933 SVIGFNTYKF 10 Unmodified _SVIGFNTYKF_ 0 0 0 REV__ENSG00000123684|ENST00000366997|LPGAT1 REV__ENSG00000123684|ENST00000366997|LPGAT1 MSMS AL20221201_MKP_PDAC_01 4 392.5415649414062 3 392.541363 1174.60226 NaN NaN NaN NaN NaN NaN NaN 76.304 1 70.128 69.628 70.628 -6.1757 0 0 0 0.49971 1 49912 49912 17.863 3.4578 1 + 61662 19400 41202 42126 71781 71781 0.02194298648782933 SVIKVPVMYLD 11 Unmodified _SVIKVPVMYLD_ 0 0 0 ENSG00000164645|ENST00000297203|TEX47 ENSG00000164645|ENST00000297203|TEX47 ENSG00000164645|ENST00000297203|TEX47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.9075012207031 3 421.905425 1262.69445 NaN NaN NaN NaN NaN NaN NaN 15.68 1 15.686 15.186 16.186 0.0057774 0 0 0 0.94307 1 7825 7825 0.08335 0 1 61663 7220 41203 42127 71782 71782 0.0736064067082225 SVITQVFHV 9 Unmodified _SVITQVFHV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2901611328125 2 515.290017 1028.56548 0.40866 0.00021058 0.1727 8.8988E-05 0.58136 0.00029957 515.2900854068338 71.184 0.29567 70.706 70.589 70.884 -0.47735 26 12 3 0 0 0 0.10734 1 38971 38971 32.305 15.193 1 1317500 61664 3152 41204 42128 71783 71783 0.05234046822897653 SVITQVFHV 9 Unmodified _SVITQVFHV_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2903442382812 2 515.290017 1028.56548 1.0711 0.00055194 0.76863 0.00039607 1.8398 0.00094801 515.2904570180779 70.632 0.2366 70.667 70.549 70.785 0.035515 17 10 2 0 0 0 0.070838 1 38897 38897 39.957 17.221 1 2029900 61665 3152 41204 42128 71784 71784 0.05234046822897653 SVKAGAPV 8 Unmodified _SVKAGAPV_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.7197570800781 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 36.222 1 36.222 35.722 36.722 0 0 0 0 0.97348 1 19198 19198 5.7604 0 1 + 61666 21434 41205 42129 71785 71785 0.04822459151523617 SVKKKKKRGK 10 Unmodified _SVKKKKKRGK_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.0864868164062 3 396.275063 1185.80336 NaN NaN NaN NaN NaN NaN NaN 17.595 1 17.6 17.1 18.1 0.0050564 0 0 0 1.0061 1 8882 8882 0 0 1 61667 770 41206 42130 71786 71786 0.21789032475976455 SVKMPVAKNP 10 Unmodified _SVKMPVAKNP_ 0 0 0 REV__ENSG00000258890|ENST00000556440|CEP95 REV__ENSG00000258890|ENST00000556440|CEP95 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5411376953125 3 357.539077 1069.5954 NaN NaN NaN NaN NaN NaN NaN 38.327 1 38.344 37.844 38.844 0.01704 0 0 0 0.99388 1 20375 20375 0.56317 0 1 + 61668 24570 41207 42131 71787 71787 0.06338662496568759 SVKWILMGY 9 Unmodified _SVKWILMGY_ 0 0 0 REV__ENST00000265073.8_1_5:32601627-32601789:+|nuORF REV__ENST00000265073.8_1_5:32601627-32601789:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8662719726562 3 366.200172 1095.57869 -0.015582 -5.706E-06 -0.77661 -0.00028439 -0.79219 -0.0002901 366.19996420536717 3.5361 0.12273 3.5237 3.4604 3.5831 -0.012334 74 49 2 0 0 0 0.21874 1 1808 1808 1.1933 1.1933 1 1014200 + 61669 25085 41208 42132 71788 71788 0.034721616106480724 SVKYLLNY 8 Unmodified _SVKYLLNY_ 0 0 0 REV__ENST00000376495.4_1_10:23730022-23730082:+|nuORF REV__ENST00000376495.4_1_10:23730022-23730082:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.5526123046875 1 999.550959 998.543683 0.10526 0.00010521 1.1104 0.0011099 1.2157 0.0012151 999.5521514865598 99.791 0.075966 93.616 93.588 93.664 -6.1757 6 5 2 0 0 0 0.52622 1 66582 66582 32.305 0 1 21820000 + 61670 26225 41209 42133 71789 71789 0.04435242074339385 SVLDGLLYV 9 Unmodified _SVLDGLLYV_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5538940429688 1 978.550625 977.543348 0.27289 0.00026704 -0.48935 -0.00047885 -0.21646 -0.00021181 978.5501776943104 96.577 0.30215 96.272 96.131 96.433 -0.30473 27 17 2 0 0 0 0.30562 2 52703 52703;52798 16.942 4.4107 1 653180 61671 6856 41210 42134 71790;71791 71790 0.05367822354457985 SVLDLVVAL 9 Unmodified _SVLDLVVAL_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.571533203125 1 928.57136 927.564084 0.78302 0.00072709 -0.097163 -9.0223E-05 0.68586 0.00063687 928.5710502760079 101.61 0.10976 95.432 95.373 95.483 -6.1757 14 5 3 0 0 0 0.0090851 1 68184 68184 85.357 7.3724 1 28092000 61672 739 41211 42135 71792 71792 0.09740412734117854 SVLDLVVAL 9 Unmodified _SVLDLVVAL_ 0 0 0 nc|ENSG00000052749|Q5JTH9-2|RRP12;nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF nc|ENSG00000052749|Q5JTH9-2|RRP12 nc|ENSG00000052749|Q5JTH9-2|RRP12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 465.2498474121094 2 464.789318 927.564084 0.74699 0.00034719 0.081527 3.7893E-05 0.82852 0.00038508 464.78910373424674 101.61 0.088516 95.435 95.373 95.461 -6.1757 7 4 2 0 0 0 0.18118 1 68157 68157 12.532 4.6214 1 7479000 61673 739 41211 42135 71793 71793 0.09740412734117854 SVLEAIDTY 9 Unmodified _SVLEAIDTY_ 0 0 0 ENSG00000093010|ENST00000361682|COMT;nc|ENSG00000093010|P21964-2|COMT ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7557067871094 2 505.755672 1009.49679 0.46915 0.00023728 -0.37849 -0.00019142 0.090662 4.5853E-05 505.7552836219214 63.325 0.48933 63.325 63.146 63.636 0 41 24 2 0 0 0 0.087258 2 35302 35302;35403 36.044 7.5574 1 6655000 61674 1629 41212 42136 71794;71795 71794 -0.00757662267494652 SVLEDPVHAV 10 Unmodified _SVLEDPVHAV_ 0 0 0 ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 ENSG00000058262|ENST00000243253|SEC61A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2838745117188 2 533.282389 1064.55022 0.74124 0.00039529 0.51135 0.0002727 1.2526 0.00066799 533.2828245705491 47.571 0.21481 47.571 47.471 47.686 0 18 9 3 0 0 0 0.24625 1 26059 26059 30.637 12.49 1 2062200 61675 801 41213 42137 71796 71796 0.02053135235018999 SVLENYHTE 9 Unmodified _SVLENYHTE_ 0 0 0 nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2542724609375 2 546.253828 1090.4931 0.24723 0.00013505 -0.031214 -1.7051E-05 0.21601 0.000118 546.2537536773092 26.719 0.50503 26.747 26.59 27.095 0.028664 54 22 3 0 0 0 0.5029 1 13929 13929 7.2892 0 1 63680000 61676 16491 41214 42138 71797 71797 -0.048523320413323745 SVLGAITSV 9 Unmodified _SVLGAITSV_ 0 0 0 nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1 nc|ENSG00000120705|P62495-2|ETF1 nc|ENSG00000120705|P62495-2|ETF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 846.4945678710938 1 846.49311 845.485833 -0.14506 -0.00012279 0.091172 7.7176E-05 -0.053887 -4.5615E-05 846.4931549593232 68.646 0.29873 68.165 68.01 68.309 -0.48071 18 13 2 0 0 0 0.022193 1 37488 37488 61.357 3.8861 1 1587400 61677 3533 41215 42139 71798 71798 0.05690980148892777 SVLGALIGV 9 Unmodified _SVLGALIGV_ 0 0 0 nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.5213623046875 1 828.518931 827.511654 1.3269 0.0010994 -0.46202 -0.00038279 0.8649 0.00071659 828.5184911054755 100.22 0.16493 94.045 93.957 94.122 -6.1757 20 9 3 0 0 0 0.0083087 1 66933 66933 97.075 26.359 1 38852000 61678 7123 41216 42140 71799 71799 0.09099874391188223 SVLGALIGV 9 Unmodified _SVLGALIGV_ 0 0 0 nc|ENSG00000164051|Q96ER9-2|CCDC51;ENSG00000164051|ENST00000395694|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 nc|ENSG00000164051|Q96ER9-2|CCDC51 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.7639770507812 2 414.763104 827.511654 1.4603 0.00060566 0.17727 7.3526E-05 1.6375 0.00067918 414.7629344082526 100.21 0.12574 94.036 93.978 94.103 -6.1757 11 7 2 0 0 0 0.023164 1 66975 66975 60.39 13.469 1 17290000 61679 7123 41216 42140 71800 71800 0.09099874391188223 SVLGECLDHF 10 Unmodified _SVLGECLDHF_ 0 0 0 ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF ENSG00000107951|ENST00000263063|MTPAP ENSG00000107951|ENST00000263063|MTPAP MSMS AL20221201_MKP_PDAC_01 4 373.8422241210938 3 373.842825 1118.50665 NaN NaN NaN NaN NaN NaN NaN 16.708 1 14.151 13.651 14.651 -2.557 0 0 0 0.96981 1 8674 8674 1.9064 0 1 61680 2535 41217 42141 71801 71801 -0.04786797533756726 SVLGKIWKL 9 Unmodified _SVLGKIWKL_ 0 0 0 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 ENSG00000103966|ENST00000220325|EHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3348999023438 2 522.334227 1042.6539 1.1667 0.00060941 -0.016255 -8.4907E-06 1.1505 0.00060092 522.3341189544378 94.666 0.18359 88.49 88.409 88.592 -6.1757 19 10 2 0 0 0 0.014417 1 62684 62684 69.105 32.978 1 35432000 61681 2167 41218 42142 71802 71802 0.13428087133365807 SVLHVRWV 8 Unmodified _SVLHVRWV_ 0 0 0 ENST00000437099.6_1_17:9819253-9819832:-|nuORF ENST00000437099.6_1_17:9819253-9819832:-|nuORF ENST00000437099.6_1_17:9819253-9819832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2908935546875 2 498.292894 994.571235 -0.12919 -6.4374E-05 -4.1088 -0.0020474 -4.238 -0.0021118 498.2911434653575 31.949 0.1714 31.979 31.887 32.059 0.030106 11 7 2 0 0 0 0.74163 1 16777 16777 13.508 1.8676 1 1161900 61682 13341 41219 42143 71803 71803 0.07373190125224482 SVLKLPRLVR 10 Unmodified _SVLKLPRLVR_ 0 0 0 REV__ENSG00000148408|ENST00000371372|CACNA1B;REV__nc|ENSG00000198216|Q15878-2|CACNA1E;REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant REV__CACNA1A|p.L1178Pfs*38|1|0.36|ENSG00000141837|chr19:13286523-13286524|-/G|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1180.955444335938 1 1180.78884 1179.78156 0.53685 0.0006339 2.7328 0.0032269 3.2697 0.0038608 1181.7942047290708 67.652 0.099106 61.476 61.418 61.517 -6.1757 6 4 2 0 0 0 0.24008 1 44061 44061 0.40072 0 1 11788000 + 61683 24003;16752;20950 41220 42144 71804 71804 0.19886227727420192 SVLPHTGYI 9 Unmodified _SVLPHTGYI_ 0 0 0 ENSG00000105618|ENST00000321030|PRPF31;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 ENSG00000105618|ENST00000321030|PRPF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.5328369140625 1 986.530558 985.523281 0.49314 0.0004865 0.53337 0.00052619 1.0265 0.0010127 986.5319011357309 42.478 0.26745 42.478 42.318 42.586 0 22 12 2 0 0 0 0.30562 1 22961 22961 16.942 0 1 2968600 61684 2342 41221 42145 71805 71805 0.029940714145254788 SVLPSSLSVF 10 Unmodified _SVLPSSLSVF_ 0 0 0 ENSG00000157764|ENST00000646891|BRAF;ENST00000469930.1_1_7:140534396-140624503:-|nuORF ENSG00000157764|ENST00000646891|BRAF ENSG00000157764|ENST00000646891|BRAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.289306640625 2 518.289682 1034.56481 0.44416 0.0002302 0.20736 0.00010747 0.65152 0.00033768 518.289900588532 68.674 0.24245 68.674 68.543 68.786 0 14 10 2 0 0 0 0.69064 1 38310 38310 3.9444 1.0552 1 479820 61685 6537 41222 42146 71806 71806 0.04891207383184337 SVLRLSVSY 9 Unmodified _SVLRLSVSY_ 0 0 0 ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2958984375 2 512.295299 1022.57605 0.1878 9.6208E-05 0.82115 0.00042067 1.009 0.00051688 512.2956124273765 55.527 0.40681 55.458 55.278 55.685 -0.068737 39 20 3 0 0 0 0.0093064 2 30133 30133;30240 83.429 39.57 1 15288000 61686 2437;862 41223 42147 71807;71808 71807 0.06566029477335178 SVLRLSVSY 9 Unmodified _SVLRLSVSY_ 0 0 0 ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2960815429688 2 512.295299 1022.57605 0.94511 0.00048417 -0.3924 -0.00020102 0.55271 0.00028315 512.2955570777127 61.674 0.43238 55.498 55.309 55.741 -6.1757 44 22 3 0 0 0 0.0082548 2 39691 39691;39820 96.367 52.508 1 37862000 61687 2437;862 41223 42147 71809;71810 71809 0.06566029477335178 SVLRLSVSY 9 Unmodified _SVLRLSVSY_ 0 0 0 ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR;nc|ENSG00000063438|A9YTQ3|AHRR;nc|ENSG00000063438|A9YTQ3-3|AHRR;nc|ENSG00000063438|A9YTQ3-2|AHRR ENSG00000106546|ENST00000242057|AHR;ENSG00000063438|ENST00000684583|AHRR ENSG00000106546|ENST00000242057|AHR MSMS AL20221201_MKP_PDAC_01 4 512.7784423828125 2 512.295299 1022.57605 NaN NaN NaN NaN NaN NaN NaN 62.056 1 55.88 55.38 56.38 -6.1757 0 0 0 0.26013 1 40009 40009 27.223 7.9662 1 61688 2437;862 41223 42147 71811 71811 0.06566029477335178 SVLRVEGPGA 10 Unmodified _SVLRVEGPGA_ 0 0 0 REV__nc|ENSG00000095397|Q9P202-2|WHRN REV__nc|ENSG00000095397|Q9P202-2|WHRN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.2537536621094 2 492.777274 983.539994 1.2611 0.00062143 -1.2965 -0.00063888 -0.035423 -1.7456E-05 492.7772598067391 40.898 0.31542 36.29 36.134 36.449 -4.6079 24 19 2 0 0 0 0.22149 1 24540 24540 14.838 7.549 1 8303200 + 61689 17941 41224 42148 71812 71812 0.04756572300482276 SVLSFPHF 8 Unmodified _SVLSFPHF_ 0 0 0 REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF REV__ENST00000492525.1_1_8:29974982-29975219:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.7439880371094 2 467.245078 932.475603 1.2089 0.00056484 -2.2487 -0.0010507 -1.0398 -0.00048586 467.2433065173906 63.859 0.39192 57.684 57.469 57.861 -6.1757 33 21 2 0 0 0 8.7369 1 41378 41378 9.3474 0 1 10818000 + 61690 27903 41225 42149 71813 71813 0.006664172143359792 SVLSRYNEL 9 Unmodified _SVLSRYNEL_ 0 0 0 REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7902221679688 2 540.787838 1079.56112 0.11357 6.1417E-05 -0.27603 -0.00014927 -0.16246 -8.7854E-05 540.7882893208122 40.102 0.25522 39.805 39.668 39.923 -0.29716 19 11 2 0 0 0 0.19127 1 21168 21168 24.021 0 1 3951700 + 61691 24021 41226 42150 71814 71814 0.024525376093151863 SVLSRYNEL 9 Unmodified _SVLSRYNEL_ 0 0 0 REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7643432617188 2 540.787838 1079.56112 0.11357 6.1417E-05 -0.27603 -0.00014927 -0.16246 -8.7854E-05 540.7882893208122 40.102 0.25522 39.805 39.668 39.923 -0.29716 19 11 2 0 0 0 0.20728 1 21205 21205 8.7454 1.4562 1 3951700 + 61692 24021 41226 42150 71815 71815 0.024525376093151863 SVLSRYNEL 9 Unmodified _SVLSRYNEL_ 0 0 0 REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF REV__ENST00000539211.6_1_19:56918456-56925471:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 540.787838 1079.56112 0.21067 0.00011393 -0.14821 -8.0147E-05 0.062464 3.378E-05 540.7882423749402 39.845 0.32919 39.845 39.681 40.01 0 0.020218 2.4882E-05 NaN 24.021 58 16 5 NaN NaN NaN NaN 0 NaN NaN 0 22912000 + 61693 24021 41226 42150 0.024525376093151863 SVLTKPACI 9 Unmodified _SVLTKPACI_ 0 0 0 ENST00000533409.1_1_11:59951353-59951413:-|nuORF ENST00000533409.1_1_11:59951353-59951413:-|nuORF ENST00000533409.1_1_11:59951353-59951413:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.7439880371094 2 466.267696 930.520839 1.3711 0.00063929 -3.532 -0.0016469 -2.1609 -0.0010076 466.2663493221245 64.019 0.18301 57.844 57.752 57.935 -6.1757 14 9 2 0 0 0 0.18118 1 41378 41378 12.532 5.2423 1 4318400 61694 14937 41227 42151 71816 71816 0.05279899685194778 SVLVSPPAV 9 Unmodified _SVLVSPPAV_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.7609252929688 2 434.760561 867.506569 0.62686 0.00027253 -0.54555 -0.00023718 0.081313 3.5352E-05 434.7606943064948 66.622 0.45795 60.447 60.156 60.614 -6.1757 29 25 2 0 0 0 0.0094915 1 43264 43264 81.864 18.301 1 9022000 61695 6367 41228 42152 71817 71817 0.06751570528570028 SVLVSVSEV 9 Unmodified _SVLVSVSEV_ 0 0 0 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 ENSG00000221926|ENST00000649191|TRIM16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.514404296875 1 918.514239 917.506963 0.18278 0.00016789 0.519 0.00047671 0.70178 0.00064459 918.5144703574875 59.039 0.22736 59.039 58.965 59.192 0 14 9 2 0 0 0 0.042911 1 32898 32898 48.346 12.302 1 1125000 61696 10560 41229 42153 71818 71818 0.04490945457769158 SVMELLQGV 9 Unmodified _SVMELLQGV_ 0 0 0 ENSG00000132256|ENST00000380034|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 ENSG00000132256|ENST00000380034|TRIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2628173828125 2 488.26261 974.510668 0.63957 0.00031228 1.4494 0.00070768 2.089 0.00102 488.2629485632236 85.702 0.21719 85.201 85.127 85.344 -0.5015 16 9 2 0 0 0 0.39863 1 46936 46936 12.532 5.2423 1 307230 61697 4381 41230 42154 71819 71819 0.022392919599724337 SVMPAVHTF 9 Oxidation (M) _SVM(Oxidation (M))PAVHTF_ SVM(1)PAVHTF SVM(93)PAVHTF 0 0 1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7466430664062 2 502.747127 1003.4797 0.84287 0.00042375 -1.3403 -0.00067381 -0.49738 -0.00025006 502.74633834227564 36.365 0.19827 36.365 36.269 36.467 0 18 9 3 0 0 0 0.0082281 1 19289 19289 92.822 56.695 1 4573900 61698 5337 41231 42155 71820 71820 978 -0.021898613542475687 SVMPAVHTF 9 Oxidation (M) _SVM(Oxidation (M))PAVHTF_ SVM(1)PAVHTF SVM(120)PAVHTF 0 0 1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7479553222656 2 502.747127 1003.4797 -0.89424 -0.00044958 1.3986 0.00070313 0.50434 0.00025355 502.7481386228615 36.287 0.20302 36.037 35.906 36.109 -0.2497 17 8 3 0 0 0 0.0048787 1 19015 19015 117.6 75.504 1 4112800 61699 5337 41231 42155 71821 71821 978 -0.021898613542475687 SVMPAVHTF 9 Oxidation (M) _SVM(Oxidation (M))PAVHTF_ SVM(1)PAVHTF SVM(93)PAVHTF 0 0 1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7471923828125 2 502.747127 1003.4797 -0.80027 -0.00040233 0.69792 0.00035088 -0.10235 -5.1454E-05 502.74727362076163 36.599 0.1974 36.35 36.253 36.45 -0.2497 15 7 3 0 0 0 0.0082281 1 19213 19213 92.822 64.335 1 6703400 61700 5337 41231 42155 71822 71822 978 -0.021898613542475687 SVMPAVHTF 9 Oxidation (M) _SVM(Oxidation (M))PAVHTF_ SVM(1)PAVHTF SVM(46)PAVHTF 0 0 1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 502.7479248046875 2 502.747127 1003.4797 NaN NaN NaN NaN NaN NaN NaN 40.807 1 36.278 35.778 36.778 -4.5294 0 0 0 0.08978 1 24416 24416 46.021 23.285 1 61701 5337 41231 42155 71823 71823 978 -0.021898613542475687 SVMPAVHTF 9 Unmodified _SVMPAVHTF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7498779296875 2 494.74967 987.484787 1.1819 0.00058474 -0.29915 -0.00014801 0.88274 0.00043674 494.74956306192115 55.373 0.36652 49.452 49.272 49.638 -5.9211 48 22 3 0 0 0 0.0082281 1 35202 35202 92.822 56.778 1 27341000 61702 5337 41231 42156 71824 71824 -0.009455574916387377 SVMRLTISY 9 Oxidation (M) _SVM(Oxidation (M))RLTISY_ SVM(1)RLTISY SVM(48)RLTISY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.286865234375 2 543.286617 1084.55868 0.080721 4.3855E-05 -3.9531 -0.0021477 -3.8724 -0.0021038 543.2849904906687 46.085 0.40436 45.748 45.534 45.939 -0.33664 41 20 3 0 0 0 0.044296 2 24723 24622;24723 47.594 18.513 1 46382000 61703 1860 41232 42157 71825;71826 71826 308 0.019783658800179182 SVMRLTISY 9 Oxidation (M) _SVM(Oxidation (M))RLTISY_ SVM(1)RLTISY SVM(51)RLTISY 0 0 1 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2871704101562 2 543.286617 1084.55868 0.21846 0.00011868 -0.31786 -0.00017269 -0.099407 -5.4006E-05 543.2866400708975 45.769 0.49072 45.741 45.529 46.02 -0.028011 67 23 4 0 0 0 0.037253 2 24670 24563;24670 51.415 22.334 1 23928000 61704 1860 41232 42157 71827;71828 71828 308 0.019783658800179182 SVMSILPKI 9 Unmodified _SVMSILPKI_ 0 0 0 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 ENSG00000111897|ENST00000339697|SERINC1 MSMS AL20221201_MKP_PDAC_01 4 494.2994995117188 2 494.298996 986.583439 NaN NaN NaN NaN NaN NaN NaN 95.198 1 89.022 88.522 89.522 -6.1757 0 0 0 0.25233 1 63055 63055 27.629 7.1752 1 61705 2845 41233 42158 71829 71829 0.08961045753392227 SVMSLVIFV 9 Oxidation (M) _SVM(Oxidation (M))SLVIFV_ SVM(1)SLVIFV SVM(51)SLVIFV 0 0 1 ENST00000361804.4_1_10:112328768-112337656:+|nuORF ENST00000361804.4_1_10:112328768-112337656:+|nuORF ENST00000361804.4_1_10:112328768-112337656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.785400390625 2 505.783179 1009.5518 2.0268 0.0010251 0.92036 0.0004655 2.9471 0.0014906 505.78355134229474 93.849 0.55594 93.872 93.746 94.302 0.022987 29 21 2 0 0 0 0.038285 1 52181 52181 50.855 31.416 1 1482300 61706 12193 41234 42159 71830 71830 1751 0.04741052999452222 SVNCAYTSKIL 11 Unmodified _SVNCAYTSKIL_ 0 0 0 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1 nc|ENSG00000070961|P20020-5|ATP2B1 nc|ENSG00000070961|P20020-5|ATP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8094482421875 2 599.810456 1197.60636 -0.11597 -6.9558E-05 0.12713 7.6256E-05 0.011167 6.698E-06 599.8106905866822 76.794 0.37032 76.315 76.13 76.5 -0.47945 36 17 3 0 0 0 0.6889 1 41993 41993 5.2969 0.066215 1 2228000 61707 1047 41235 42160 71831 71831 0.01546020080195376 SVNLVVVA 8 Unmodified _SVNLVVVA_ 0 0 0 REV__nc|ENSG00000196811|P07510-2|CHRNG REV__nc|ENSG00000196811|P07510-2|CHRNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4878540039062 1 800.48763 799.480354 0.20949 0.0001677 -0.12268 -9.82E-05 0.086819 6.9498E-05 800.4879459658034 62.056 0.19207 61.568 61.489 61.681 -0.48764 11 8 2 0 0 0 0.58902 1 33812 33812 26.884 8.7487 1 820420 + 61708 23870 41236 42161 71832 71832 0.07259301357089498 SVNNVVVRY 9 Unmodified _SVNNVVVRY_ 0 0 0 ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN ENSG00000088812|ENST00000262919|ATRN ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2905883789062 2 525.290548 1048.56654 -0.42349 -0.00022246 0.43742 0.00022977 0.013927 7.3155E-06 525.291071914441 36.872 0.17576 36.622 36.554 36.729 -0.2497 10 7 2 0 0 0 0.020973 1 19377 19377 62.573 44.426 1 1634400 61709 1496 41237 42162 71833 71833 0.04420261191808095 SVNNVVVRY 9 Unmodified _SVNNVVVRY_ 0 0 0 ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN ENSG00000088812|ENST00000262919|ATRN ENSG00000088812|ENST00000262919|ATRN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 525.290548 1048.56654 0.95977 0.00050416 -0.001521 -7.9898E-07 0.95825 0.00050336 525.2904407333256 36.603 0.18314 36.603 36.527 36.71 0 -0.0099479 -0.00026811 NaN 62.573 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1143600 61710 1496 41237 42162 0.04420261191808095 SVNRTEIVF 9 Unmodified _SVNRTEIVF_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.791259765625 2 532.790381 1063.56621 -0.2644 -0.00014087 1.0105 0.00053836 0.74605 0.00039749 532.7910178824607 48.791 0.2723 48.791 48.618 48.89 0 30 12 3 0 0 0 0.091924 1 26765 26765 34.932 13.395 1 4993900 61711 3152 41238 42163 71834 71834 0.036968414719467546 SVNSVVSTF 9 Unmodified _SVNSVVSTF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2426452636719 2 470.242732 938.470912 0.8995 0.00042298 -1.3299 -0.00062538 -0.43041 -0.0002024 470.242091879794 54.088 0.27662 54.088 53.945 54.222 0 22 12 2 0 0 0 0.015445 1 30018 30018 68.081 44.932 1 3592900 61712 1052 41239 42164 71835 71835 -0.0007851171907304888 SVNSVVSTF 9 Unmodified _SVNSVVSTF_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10078742-10093271:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MSMS AL20221201_MKP_PDAC_01 4 470.2433166503906 2 470.242732 938.470912 NaN NaN NaN NaN NaN NaN NaN 62.255 1 56.079 55.579 56.579 -6.1757 0 0 0 0.098163 1 40153 40153 43.858 28.011 1 61713 1052 41239 42164 71836 71836 -0.0007851171907304888 SVNTPQAGYF 10 Unmodified _SVNTPQAGYF_ 0 0 0 ENSG00000197753|ENST00000360215|LHFPL5;chr6:35797289-35797392|106|338.87|0.0|25.01|+|ENST00000651132|LHFPL5,LHFPL5 ENSG00000197753|ENST00000360215|LHFPL5 ENSG00000197753|ENST00000360215|LHFPL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2593994140625 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 45.943 1 45.943 45.443 46.443 0 0 0 0 0.91523 1 25080 25080 7.2892 0.56607 1 61714 118 41240 42165 71837 71837 -0.03467724316078602 SVNVLRKYI 9 Unmodified _SVNVLRKYI_ 0 0 0 ENST00000488375.2_2_17:16220949-16229209:+|nuORF;ENSG00000108474|ENST00000225609|PIGL ENST00000488375.2_2_17:16220949-16229209:+|nuORF ENST00000488375.2_2_17:16220949-16229209:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8505554199219 3 364.557236 1090.64988 1.5807 0.00057627 -1.5747 -0.00057406 0.0060651 2.2111E-06 364.55696035379145 19.214 0.19216 16.557 16.42 16.612 -2.6564 27 12 3 0 0 0 0.21404 1 10182 10182 5.2969 0 1 3975700 61715 2574 41241 42166 71838 71838 0.10817997639651367 SVPATPPVL 9 Unmodified _SVPATPPVL_ 0 0 0 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7600402832031 2 440.760561 879.506569 -0.053665 -2.3653E-05 -0.38381 -0.00016917 -0.43747 -0.00019282 440.76031652512836 56.277 0.54206 56.277 56.093 56.635 0 64 24 3 0 0 0 0.023164 1 31355 31355 60.39 6.814 1 26498000 + 61716 29874 41242 42167 71839 71839 0.06199570528565346 SVPATPPVL 9 Unmodified _SVPATPPVL_ 0 0 0 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7596740722656 2 440.760561 879.506569 -0.13282 -5.8541E-05 0.72931 0.00032145 0.5965 0.00026291 440.7608365551223 56.827 0.4478 56.341 56.136 56.583 -0.48554 61 21 4 0 0 0 0.013472 2 30820 30820;30921 70.716 0 1 19855000 + 61717 29874 41242 42167 71840;71841 71840 0.06199570528565346 SVPATPPVL 9 Unmodified _SVPATPPVL_ 0 0 0 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7610778808594 2 440.760561 879.506569 1.5493 0.00068285 -0.12295 -5.419E-05 1.4263 0.00062866 440.7604764069313 64.075 0.62547 57.899 57.595 58.221 -6.1757 96 33 4 0 0 0 0.013472 2 41576 41316;41576 70.716 13.768 1 148300000 + 61718 29874 41242 42167 71842;71843 71843 0.06199570528565346 SVPATPPVL 9 Unmodified _SVPATPPVL_ 0 0 0 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 REV__nc|ENSG00000196115|Q6NVV9-7|ADAM5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 440.760561 879.506569 -0.13282 -5.8541E-05 0.72931 0.00032145 0.5965 0.00026291 440.7608365551223 56.827 0.4478 56.341 56.136 56.583 -0.48554 0.032007 0.00048578 NaN 70.716 61 21 4 NaN NaN NaN NaN 0 NaN NaN 0 19855000 + 61719 29874 41242 42167 0.06199570528565346 SVPCSPQE 8 Unmodified _SVPCSPQE_ 0 0 0 nc|ENSG00000188549|Q6ZUT6-2|CCDC9B;ENST00000382688.8_1_15:40627361-40631125:-|nuORF;nc|ENSG00000188549|Q6ZUT6-4|CCDC9B;ENSG00000188549|ENST00000397536|CCDC9B;nc|ENSG00000188549|Q6ZUT6|CCDC9B nc|ENSG00000188549|Q6ZUT6-2|CCDC9B nc|ENSG00000188549|Q6ZUT6-2|CCDC9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.6874694824219 2 423.686736 845.358918 0.45083 0.00019101 1.4017 0.0005939 1.8526 0.00078491 423.6872850236366 53.85 0.38619 53.85 53.665 54.051 0 29 17 2 0 0 0 0.80311 1 29942 29942 4.756 0 1 5420200 61720 9666 41243 42168 71844 71844 -0.06994689067732907 SVPFMDYFML 10 Unmodified _SVPFMDYFML_ 0 0 0 ENST00000369303.8_1_6:94124469-94129072:-|nuORF ENST00000369303.8_1_6:94124469-94129072:-|nuORF ENST00000369303.8_1_6:94124469-94129072:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2846069335938 2 625.285228 1248.5559 0.43144 0.00026978 -0.30704 -0.00019199 0.1244 7.7786E-05 625.2850303409847 52.153 0.34064 51.719 51.55 51.891 -0.43367 40 16 3 0 0 0 0.44373 1 28140 28140 19.257 2.1441 1 4073100 61721 12302 41244 42169 71845 71845 -0.058432255691514 SVPFMDYFML 10 Unmodified _SVPFMDYFML_ 0 0 0 ENST00000369303.8_1_6:94124469-94129072:-|nuORF ENST00000369303.8_1_6:94124469-94129072:-|nuORF ENST00000369303.8_1_6:94124469-94129072:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 625.285228 1248.5559 0.43144 0.00026978 -0.30704 -0.00019199 0.1244 7.7786E-05 625.2850303409847 52.153 0.34064 51.719 51.55 51.891 -0.43367 0 0 NaN 19.257 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4073100 61722 12302 41244 42169 -0.058432255691514 SVPILILMCNF 11 Unmodified _SVPILILMCNF_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.3375244140625 2 625.337795 1248.66104 0.28691 0.00017942 -0.32179 -0.00020123 -0.034877 -2.181E-05 625.3375259414512 76.037 0.41537 75.557 75.324 75.74 -0.47945 44 17 3 0 0 0 0.65108 1 41563 41563 8.7454 3.9894 1 2278800 + 61723 17559 41245 42170 71846 71846 0.04665315627266864 SVPILILMCNF 11 Unmodified _SVPILILMCNF_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3377685546875 2 625.337795 1248.66104 0.38594 0.00024135 -0.29523 -0.00018462 0.090716 5.6728E-05 625.3376163677896 75.527 0.46895 75.575 75.328 75.797 0.047943 59 21 3 0 0 0 0.48615 2 41581 41581;41679 17.113 8.9574 1 21635000 + 61724 17559 41245 42170 71847;71848 71847 0.04665315627266864 SVPILILMCNF 11 Unmodified _SVPILILMCNF_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3381958007812 2 625.337795 1248.66104 0.79283 0.00049578 -0.27099 -0.00016946 0.52184 0.00032633 625.3374899904348 83.439 0.56215 77.263 77.005 77.567 -6.1757 63 29 3 0 0 0 0.48615 2 54858 54858;54989 17.113 5.6182 1 102590000 + 61725 17559 41245 42170 71849;71850 71849 0.04665315627266864 SVPILILMCNF 11 Unmodified _SVPILILMCNF_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 625.337795 1248.66104 0.28691 0.00017942 -0.32179 -0.00020123 -0.034877 -2.181E-05 625.3375259414512 76.037 0.41537 75.557 75.324 75.74 -0.47945 -0.0086524 -1.7671E-05 NaN 17.113 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2278800 + 61726 17559 41245 42170 0.04665315627266864 SVPILILMCNF 11 Unmodified _SVPILILMCNF_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 625.337795 1248.66104 0.38594 0.00024135 -0.29523 -0.00018462 0.090716 5.6728E-05 625.3376163677896 75.527 0.46895 75.575 75.328 75.797 0.047943 0.0086524 1.5548E-05 NaN 17.113 59 21 3 NaN NaN NaN NaN 0 NaN NaN 0 21635000 + 61727 17559 41245 42170 0.04665315627266864 SVPLHLRW 8 Unmodified _SVPLHLRW_ 0 0 0 REV__ENST00000574376.1_1_17:78075862-78076012:+|nuORF REV__ENST00000574376.1_1_17:78075862-78076012:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7335205078125 2 504.292894 1006.57123 -0.56664 -0.00028575 0.051532 2.5987E-05 -0.5151 -0.00025976 504.79400041234794 69.586 0.13871 69.107 69.064 69.203 -0.47903 9 5 2 0 0 0 8.7369 1 38022 38022 2.5775 0 1 311150 + 61728 29007 41246 42171 71851 71851 0.06821190125231169 SVPPLPYSY 9 Unmodified _SVPPLPYSY_ 0 0 0 ENST00000484115.5_1_3:49043105-49043375:+|nuORF;ENST00000472301.5_1_3:49043105-49044337:+|nuORF;nc|ENSG00000178467|Q9NXG6-3|P4HTM ENST00000484115.5_1_3:49043105-49043375:+|nuORF ENST00000484115.5_1_3:49043105-49043375:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7645874023438 2 511.7633 1021.51205 0.25266 0.0001293 1.4069 0.00072001 1.6596 0.00084932 511.763922814069 93.472 0.26982 93.014 92.862 93.131 -0.45741 27 11 3 0 0 0 0.54444 1 51060 51060 4.756 0 1 453330 61729 13901 41247 42172 71852 71852 0.0021524932037664257 SVPPLPYSY 9 Unmodified _SVPPLPYSY_ 0 0 0 ENST00000484115.5_1_3:49043105-49043375:+|nuORF;ENST00000472301.5_1_3:49043105-49044337:+|nuORF;nc|ENSG00000178467|Q9NXG6-3|P4HTM ENST00000484115.5_1_3:49043105-49043375:+|nuORF ENST00000484115.5_1_3:49043105-49043375:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 511.7633 1021.51205 0.28584 0.00014628 0.99592 0.00050968 1.2818 0.00065596 511.7636667789296 92.983 0.26118 92.983 92.87 93.132 0 -0.015495 -0.00026968 NaN 4.756 21 16 2 NaN NaN NaN NaN 0 NaN NaN 0 229450 61730 13901 41247 42172 0.0021524932037664257 SVPQIHPH 8 Unmodified _SVPQIHPH_ 0 0 0 LTR88b_dup1331|chr15:56885665-56885983:-|2.74277538430047|0.0198811332927147|7.11|179.0|13|1|anti-sense LTR88b_dup1331|chr15:56885665-56885983:-|2.74277538430047|0.0198811332927147|7.11|179.0|13|1|anti-sense LTR88b_dup1331|chr15:56885665-56885983:-|2.74277538430047|0.0198811332927147|7.11|179.0|13|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.747802734375 2 457.745776 913.477 0.45071 0.00020631 0.40137 0.00018372 0.85208 0.00039004 457.74639505330356 72.125 0.34077 72.125 71.966 72.306 0 27 15 2 0 0 0 0.80975 1 40139 40139 0.79363 0 1 1890000 61731 15982 41248 42173 71853 71853 0.016800513030943875 SVPQRSTL 8 Unmodified _SVPQRSTL_ 0 0 0 ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;nc|ENSG00000156970|O60566-2|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF ENSG00000156970|ENST00000287598|BUB1B ENSG00000156970|ENST00000287598|BUB1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2515869140625 2 444.250892 886.48723 NaN NaN NaN NaN NaN NaN NaN 20.374 1 20.403 19.903 20.903 0.028357 0 0 0 0.88449 1 10310 10310 19.257 2.1441 1 61732 6491 41249 42174 71854 71854 0.03944614237684618 SVPRTLLCLCR 11 Unmodified _SVPRTLLCLCR_ 0 0 0 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 ENSG00000065802|ENST00000264607|ASB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.9028625488281 3 420.902021 1259.68423 1.258 0.00052949 -2.0661 -0.00086964 -0.80813 -0.00034014 421.23549755171484 48.567 0.31775 43.171 43.054 43.371 -5.3961 24 18 2 0 0 0 0.65706 1 30317 30317 8.2864 4.1698 1 11065000 61733 915 41250 42175 71855 71855 0.06477754464617647 SVPRYHTISQY 11 Unmodified _SVPRYHTISQY_ 0 0 0 REV__ENST00000471965.1_1_X:153609106-153609554:+|nuORF REV__ENST00000471965.1_1_X:153609106-153609554:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8433227539062 2 675.843676 1349.6728 0.44115 0.00029815 -0.070179 -4.743E-05 0.37097 0.00025072 675.843655670938 65.269 0.46043 59.094 58.884 59.344 -6.1757 57 25 3 0 0 0 0.33405 1 42415 42415 24.991 3.454 1 17870000 + 61734 18222 41251 42176 71856 71856 0.011949719664926306 SVPVFLEVS 9 Unmodified _SVPVFLEVS_ 0 0 0 ENST00000533557.5_1_11:66281964-66290643:+|nuORF;ENST00000529955.5_1_11:66281964-66299243:+|nuORF;ENSG00000174483|ENST00000318312|BBS1;nc|ENSG00000174483|Q8NFJ9-2|BBS1 ENST00000533557.5_1_11:66281964-66290643:+|nuORF ENST00000533557.5_1_11:66281964-66290643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7727661132812 2 488.771126 975.527698 0.24648 0.00012047 -1.4663 -0.00071666 -1.2198 -0.00059619 488.7713300296405 78.819 0.53738 78.333 78.059 78.596 -0.48595 30 21 2 0 0 0 0.10734 1 43122 43122 32.305 3.8186 1 974310 61735 8425 41252 42177 71857 71857 0.03895535837443731 SVQAPSYGARP 11 Unmodified _SVQAPSYGARP_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.79052734375 2 566.790912 1131.56727 -0.39528 -0.00022404 -0.41889 -0.00023742 -0.81417 -0.00046146 566.7908123106347 27.208 0.22413 27.208 27.096 27.32 0 15 10 2 0 0 0 0.17129 1 14026 14026 34.222 7.9536 1 1839600 61736 2759 41253 42178 71858 71858 0.006750558408384677 SVQGIKVRYE 10 Unmodified _SVQGIKVRYE_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5578918457031 3 393.555784 1177.64552 1.0254 0.00040356 0.20887 8.2202E-05 1.2343 0.00048576 393.5552292183674 46.976 0.22175 46.943 46.814 47.035 -0.033417 17 10 2 0 0 0 0.66229 1 25270 25270 6.6235 2.434 1 5247600 + 61737 16944 41254 42179 71859 71859 0.0638048842608896 SVQIQRPS 8 Unmodified _SVQIQRPS_ 0 0 0 REV__nc|ENSG00000211899|P01871-1|IGHM REV__nc|ENSG00000211899|P01871-1|IGHM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7575073242188 2 457.756341 913.498129 NaN NaN NaN NaN NaN NaN NaN 21.87 1 21.87 21.37 22.37 0 0 0 0 0.85975 1 11100 11100 20.454 3.3407 1 + 61738 29932 41255 42180 71860 71860 0.03792016611953386 SVQLSDPAPG 10 Unmodified _SVQLSDPAPG_ 0 0 0 REV__ENSG00000167705|ENST00000301336|RILP REV__ENSG00000167705|ENST00000301336|RILP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.2745361328125 2 485.745639 969.476725 1.236 0.0006004 3.1519 0.001531 4.3879 0.0021314 485.74462271554535 47.84 0.14181 42.606 42.534 42.675 -5.2339 10 8 2 0 0 0 0.10476 1 29705 29705 52.268 12.319 1 2853000 + 61739 22246 41256 42181 71861 71861 -0.009234132074311674 SVQLSFPEI 9 Unmodified _SVQLSFPEI_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2738037109375 2 510.274032 1018.53351 0.47351 0.00024162 0.25427 0.00012975 0.72778 0.00037137 510.2742764685978 66.395 0.16667 66.395 66.304 66.47 0 10 6 2 0 0 0 0.5029 1 37039 37039 7.2892 0 1 422020 + 61740 19846 41257 42182 71862 71862 0.02498634349092299 SVQNGHGF 8 Unmodified _SVQNGHGF_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MSMS AL20221201_MKP_PDAC_01 4 423.2012939453125 2 423.198659 844.382765 NaN NaN NaN NaN NaN NaN NaN 82.712 1 76.537 76.037 77.037 -6.1757 0 0 0 0.97348 1 54349 54349 5.7604 2.8712 1 + 61741 20399 41258 42183 71863 71863 -0.045650875190403895 SVQPDIDVF 9 Unmodified _SVQPDIDVF_ 0 0 0 REV__nc|ENSG00000003509|Q7L592-2|NDUFAF7 REV__nc|ENSG00000003509|Q7L592-2|NDUFAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2549133300781 2 510.25584 1018.49713 0.28016 0.00014295 -0.79777 -0.00040707 -0.51761 -0.00026411 510.25537017244574 64.484 0.24862 64.484 64.324 64.573 0 21 11 2 0 0 0 0.094149 1 35943 35943 34.402 15.145 1 2459900 + 61742 16938 41259 42184 71864 71864 -0.0113824254760857 SVQPDIDVF 9 Unmodified _SVQPDIDVF_ 0 0 0 REV__nc|ENSG00000003509|Q7L592-2|NDUFAF7 REV__nc|ENSG00000003509|Q7L592-2|NDUFAF7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.25584 1018.49713 0.28016 0.00014295 -0.79777 -0.00040707 -0.51761 -0.00026411 510.25537017244574 64.484 0.24862 64.484 64.324 64.573 0 0 0 NaN 34.402 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2459900 + 61743 16938 41259 42184 -0.0113824254760857 SVQREKSF 8 Unmodified _SVQREKSF_ 0 0 0 REV__ENSG00000188993|ENST00000682860|LRRC66 REV__ENSG00000188993|ENST00000682860|LRRC66 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7614440917969 2 490.761623 979.508694 NaN NaN NaN NaN NaN NaN NaN 68.679 1 68.679 68.179 69.179 0 0 0 0 0.93066 1 38278 38278 14.582 1.0738 1 + 61744 23751 41260 42185 71865 71865 0.01811999266374187 SVQVLVFFR 9 Unmodified _SVQVLVFFR_ 0 0 0 REV__nc|ENSG00000163618|Q9ULU8-2|CADPS REV__nc|ENSG00000163618|Q9ULU8-2|CADPS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 365.2177124023438 3 365.550082 1093.62842 1.8144 0.00066327 0.19254 7.0383E-05 2.007 0.00073365 365.5500489099915 96.955 0.22325 90.779 90.622 90.845 -6.1757 22 12 2 0 0 0 0.2087 1 64213 64213 8.9762 0 1 19894000 + 61745 21789 41261 42186 71866 71866 0.08534612610947079 SVRETKIIY 9 Unmodified _SVRETKIIY_ 0 0 0 REV__nc|ENSG00000065518|O95168-2|NDUFB4 REV__nc|ENSG00000065518|O95168-2|NDUFB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.822998046875 2 554.821681 1107.62881 -0.083258 -4.6193E-05 3.717 0.0020623 3.6338 0.0020161 554.8252924247527 36.624 0.50842 36.646 36.434 36.942 0.021545 75 23 5 0 0 0 0.094149 1 19353 19353 34.402 0.29928 1 16931000 + 61746 29501 41262 42187 71867 71867 0.07929987540137517 SVRKDIESY 9 Unmodified _SVRKDIESY_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1924743652344 3 366.192623 1095.55604 NaN NaN NaN NaN NaN NaN NaN 20.371 1 20.371 19.871 20.871 0 0 0 0 0.82283 1 10245 10245 4.897 2.1618 1 61747 2585 41263 42188 71868 71868 0.012082337467063553 SVRKDIESY 9 Unmodified _SVRKDIESY_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7852172851562 2 548.785296 1095.55604 NaN NaN NaN NaN NaN NaN NaN 20.379 1 20.379 19.879 20.879 0 0 0 0 0.50458 1 10250 10250 16.149 4.5088 1 61748 2585 41263 42188 71869 71869 0.012082337467063553 SVRKDIESY 9 Unmodified _SVRKDIESY_ 0 0 0 nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 nc|ENSG00000108587|O95249-2|GOSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7857666015625 2 548.785296 1095.55604 0.067519 3.7054E-05 -0.35812 -0.00019653 -0.2906 -0.00015948 548.7848638124716 23.137 0.1852 20.359 20.232 20.418 -2.7784 16 13 2 0 0 0 0.043414 1 12501 12501 51.415 17.313 1 3329500 61749 2585 41263 42188 71870 71870 0.012082337467063553 SVRKRCHK 8 Unmodified _SVRKRCHK_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000531161.5_1_11:44146432-44228372:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MSMS AL20221201_MKP_PDAC_01 4 507.294677734375 2 507.292902 1012.57125 NaN NaN NaN NaN NaN NaN NaN 104.52 1 98.341 97.841 98.841 -6.1757 0 0 0 0.97444 1 69988 69988 2.3027 0 1 61750 6106 41264 42189 71871 71871 0.06546866853568645 SVRKVTEHL 9 Unmodified _SVRKVTEHL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.876708984375 3 356.876857 1067.60874 1.2782 0.00045618 -1.2603 -0.00044978 0.017921 6.3957E-06 356.8767500422213 18.019 0.18953 15.398 15.314 15.504 -2.6215 29 11 3 0 0 0 0.040733 1 9457 9457 39.923 22.81 1 6776500 61751 7256 41265 42190 71872 71872 0.07764236600155527 SVRLAEEPIQ 10 Unmodified _SVRLAEEPIQ_ 0 0 0 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 REV__nc|ENSG00000116127|Q8TCU4-3|ALMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2122802734375 3 381.211906 1140.61389 0.026646 1.0158E-05 0.79399 0.00030268 0.82063 0.00031284 381.21221514283474 29.315 0.42752 29.345 29.079 29.507 0.030104 32 19 3 0 0 0 0.47059 1 15262 15262 17.863 3.645 1 16339000 + 61752 19026 41266 42191 71873 71873 0.0492049567212689 SVRLKLLLHIL 11 Unmodified _SVRLKLLLHIL_ 0 0 0 REV__ENST00000397954.6_1_15:25601962-25605532:-|nuORF REV__ENST00000397954.6_1_15:25601962-25605532:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.94482421875 2 652.942465 1303.87038 NaN NaN NaN NaN NaN NaN NaN 15.81 1 15.815 15.315 16.315 0.0050564 0 0 0 0.9435 1 7897 7897 0 0 1 + 61753 26550 41267 42192 71874 71874 0.23059642967086802 SVRNFIEQI 9 Unmodified _SVRNFIEQI_ 0 0 0 REV__ENSG00000101162|ENST00000217133|TUBB1 REV__ENSG00000101162|ENST00000217133|TUBB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3045043945312 2 553.303655 1104.59276 0.98014 0.00054231 0.77634 0.00042955 1.7565 0.00097187 553.3035667413324 46.022 0.43574 46.022 45.838 46.274 0 75 20 5 0 0 0 0.08691 1 25086 25086 36.127 3.8215 1 39371000 + 61754 18139 41268 42193 71875 71875 0.04464530363270569 SVRPLVTEL 9 Unmodified _SVRPLVTEL_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3023376464844 2 507.303124 1012.5917 0.58066 0.00029457 -3.5164 -0.0017839 -2.9358 -0.0014893 507.3012356697243 52.846 0.43781 52.846 52.728 53.166 0 32 20 2 0 0 0 0.11784 1 29255 29255 31.268 3.6395 1 2450400 61755 2795 41269 42194 71876 71876 0.08590315994376851 SVRPLVTEL 9 Unmodified _SVRPLVTEL_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3036499023438 2 507.303124 1012.5917 0.049699 2.5213E-05 0.13555 6.8765E-05 0.18525 9.3977E-05 507.30333322922536 53.253 0.21996 52.802 52.723 52.943 -0.45173 17 10 2 0 0 0 0.2324 1 28834 28834 20.415 3.3016 1 1356000 61756 2795 41269 42194 71877 71877 0.08590315994376851 SVRPLVTEL 9 Unmodified _SVRPLVTEL_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107 nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 507.303124 1012.5917 1.3472 0.00068342 -0.17671 -8.9646E-05 1.1705 0.00059377 507.30308297490876 58.69 0.34697 52.616 52.387 52.734 -6.0745 -0.13872 0.00010214 NaN 31.268 32 19 2 NaN NaN NaN NaN 0 NaN NaN 0 7935300 61757 2795 41269 42194 0.08590315994376851 SVRRKSCL 8 Unmodified _SVRRKSCL_ 0 0 0 nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C nc|ENSG00000142945|Q99661-2|KIF2C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7742309570312 2 474.774011 947.533469 NaN NaN NaN NaN NaN NaN NaN 94.304 1 94.304 93.804 94.804 0 0 0 0 0.97444 1 52128 52128 0.79363 0 1 61758 5453 41270 42195 71878 71878 0.05760355868096667 SVRRMVNL 8 Unmodified _SVRRMVNL_ 0 0 0 ENSG00000156564|ENST00000338305|LRFN2 ENSG00000156564|ENST00000338305|LRFN2 ENSG00000156564|ENST00000338305|LRFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7823791503906 2 487.781836 973.549119 0.50526 0.00024646 0.99375 0.00048473 1.499 0.00073119 487.7823708395441 97.518 0.36956 97.275 97.022 97.392 -0.24277 34 16 3 0 0 0 0.78849 1 53147 53147 9.3474 3.587 1 6113900 61759 6467 41271 42196 71879 71879 0.061286423851584004 SVRRRYRRWRM 11 Unmodified _SVRRRYRRWRM_ 0 0 0 ENST00000488071.1_1_11:64494766-64496427:-|nuORF;ENST00000421556.5_1_11:64494482-64496427:-|nuORF;ENST00000464324.5_1_11:64494482-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF ENST00000488071.1_1_11:64494766-64496427:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.4552001953125 2 811.457676 1620.9008 NaN NaN NaN NaN NaN NaN NaN 74.552 1 74.552 74.052 75.052 0 0 0 0 0.94338 1 41483 41483 0.30703 0.30703 1 61760 13110 41272 42197 71880 71880 0.11518491133142561 SVSDAVATY 9 Unmodified _SVSDAVATY_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENST00000539215.5_1_12:133249167-133250211:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.4300537109375 1 912.430903 911.423627 -0.44693 -0.00040779 -0.37097 -0.00033849 -0.8179 -0.00074628 912.4301365537156 35.208 0.17506 35.208 35.09 35.265 0 14 8 2 0 0 0 0.042911 1 18575 18575 48.346 19.859 1 2219300 61761 8655 41273 42198 71881 71881 -0.035627909900881605 SVSDAVATY 9 Unmodified _SVSDAVATY_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENST00000539215.5_1_12:133249167-133250211:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.4328002929688 1 912.430903 911.423627 1.3086 0.001194 -0.32405 -0.00029568 0.98455 0.00089834 912.4304188964311 41.736 0.29456 37.128 36.999 37.294 -4.6079 24 18 2 0 0 0 0.0090851 1 25089 25089 85.357 40.95 1 4129800 61762 8655 41273 42198 71882 71882 -0.035627909900881605 SVSDYVVWS 9 Unmodified _SVSDYVVWS_ 0 0 0 ENST00000441380.1_1_6:29718586-29718787:-|nuORF ENST00000441380.1_1_6:29718586-29718787:-|nuORF ENST00000441380.1_1_6:29718586-29718787:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1042.552978515625 1 1041.48875 1040.48148 0.086506 9.0095E-05 -1.7221 -0.0017936 -1.6356 -0.0017035 1041.487083044703 51.862 0.22712 51.428 51.285 51.512 -0.43367 19 11 2 0 0 0 0.5029 1 27912 27912 7.2892 0.56607 1 2447000 61763 13395 41274 42199 71883 71883 -0.03714529064677663 SVSEVIEGY 9 Unmodified _SVSEVIEGY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 982.4722900390625 1 982.472768 981.465492 0.34689 0.00034081 -0.12241 -0.00012026 0.22449 0.00022055 982.4726353190887 49.957 0.32101 49.957 49.754 50.075 0 44 14 4 0 0 0 0.0088975 2 27544 27439;27544 104.8 37.455 1 37867000 61764 6443 41275 42200 71884;71885 71885 -0.025982353015706394 SVSEVIEGY 9 Unmodified _SVSEVIEGY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7406311035156 2 491.740022 981.465492 0.44506 0.00021885 -0.072969 -3.5882E-05 0.37209 0.00018297 491.73994728110716 49.951 0.59238 49.951 49.716 50.308 0 74 27 4 0 0 0 0.0090851 2 27470 27470;27584 85.357 38.379 1 101230000 61765 6443 41275 42200 71886;71887 71886 -0.025982353015706394 SVSEVIEGY 9 Unmodified _SVSEVIEGY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7401123046875 2 491.740022 981.465492 1.6752 0.00082378 -0.35418 -0.00017417 1.321 0.00064961 491.73953533680856 50.118 0.26361 50.07 49.947 50.21 -0.048828 19 12 2 0 0 0 0.052168 1 27091 27091 44.407 14.182 1 1080000 61766 6443 41275 42200 71888 71888 -0.025982353015706394 SVSEVIEGY 9 Unmodified _SVSEVIEGY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.4727172851562 1 982.472768 981.465492 0.35483 0.00034862 -0.52492 -0.00051572 -0.17008 -0.0001671 982.4720675787568 57.898 0.38118 51.871 51.666 52.047 -6.0275 39 21 2 0 0 0 0.0088975 2 37071 36943;37071 104.8 37.455 1 52769000 61767 6443 41275 42200 71889;71890 71890 -0.025982353015706394 SVSEVIEGY 9 Unmodified _SVSEVIEGY_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7406921386719 2 491.740022 981.465492 0.376 0.00018489 0.39262 0.00019307 0.76861 0.00037796 491.7402803594835 57.904 0.60413 51.877 51.552 52.156 -6.0275 79 33 3 0 0 0 0.023164 2 36970 36970;37110 60.39 30.165 1 162750000 61768 6443 41275 42200 71891;71892 71891 -0.025982353015706394 SVSGKRKA 8 Unmodified _SVSGKRKA_ 0 0 0 REV__ENSG00000121058|ENST00000240316|COIL REV__ENSG00000121058|ENST00000240316|COIL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.21630859375 2 416.753601 831.49265 -0.12432 -5.1811E-05 -0.022203 -9.2533E-06 -0.14652 -6.1065E-05 416.7534854665986 29.796 0.28751 29.826 29.734 30.021 0.030106 13 10 2 0 0 0 8.7369 1 15607 15607 0.69038 0.088878 1 783660 + 61769 19275 41276 42201 71893 71893 0.07016337820130047 SVSHNCFIEV 10 Unmodified _SVSHNCFIEV_ 0 0 0 REV__nc|ENSG00000211776|A0A0B4J234|TRAV2 REV__nc|ENSG00000211776|A0A0B4J234|TRAV2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.7652587890625 2 567.766049 1133.51754 0.81583 0.0004632 -2.3205 -0.0013175 -1.5047 -0.0008543 567.7647032995085 47.538 0.22033 47.5 47.34 47.561 -0.038647 14 9 2 0 0 0 0.34249 1 25605 25605 24.991 0 1 1883800 + 61770 29928 41277 42202 71894 71894 -0.04387395159483276 SVSHPFSVN 9 Unmodified _SVSHPFSVN_ 0 0 0 REV__nc|ENSG00000100987|Q9NZR4-2|VSX1 REV__nc|ENSG00000100987|Q9NZR4-2|VSX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2406616210938 2 487.240524 972.466495 0.040311 1.9641E-05 0.2091 0.00010188 0.24941 0.00012152 487.24072506908766 31.131 0.35369 31.161 30.992 31.346 0.030106 41 14 4 0 0 0 0.07916 1 16270 16270 37.974 20.861 1 13920000 + 61771 29537 41278 42203 71895 71895 -0.020839761419892966 SVSHPFSVN 9 Unmodified _SVSHPFSVN_ 0 0 0 REV__nc|ENSG00000100987|Q9NZR4-2|VSX1 REV__nc|ENSG00000100987|Q9NZR4-2|VSX1 MSMS AL20221201_MKP_PDAC_01 4 487.2409973144531 2 487.240524 972.466495 NaN NaN NaN NaN NaN NaN NaN 35.947 1 31.754 31.254 32.254 -4.1928 0 0 0 0.29524 1 20934 20934 25.399 8.457 1 + 61772 29537 41278 42203 71896 71896 -0.020839761419892966 SVSIWYQFIFY 11 Unmodified _SVSIWYQFIFY_ 0 0 0 ENST00000466187.2_1_10:70105306-70105504:-|nuORF ENST00000466187.2_1_10:70105306-70105504:-|nuORF ENST00000466187.2_1_10:70105306-70105504:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2547302246094 3 484.911456 1451.71254 0.4488 0.00021763 1.4087 0.0006831 1.8575 0.00090073 484.9122469540814 52.989 0.26369 52.537 52.4 52.663 -0.45173 24 13 3 0 0 0 0.30584 1 28590 28590 1.3296 1.3296 1 3516300 61773 13750 41279 42204 71897 71897 0.00475098917172545 SVSKDVWKF 9 Unmodified _SVSKDVWKF_ 0 0 0 REV__ENSG00000198932|ENST00000537097|GPRASP1 REV__ENSG00000198932|ENST00000537097|GPRASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8677062988281 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 4.9516 1 4.8788 4.3788 5.3788 -0.072869 0 0 0 0.85029 1 2450 2450 0.77653 0 1 + 61774 24102 41280 42205 71898 71898 0.032540294773070855 SVSNDDLHL 9 Unmodified _SVSNDDLHL_ 0 0 0 REV__ENSG00000125848|ENST00000341420|FLRT3;REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1 REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2406921386719 2 500.240721 998.466889 0.27775 0.00013894 0.45622 0.00022822 0.73397 0.00036716 500.24076687807474 85.761 0.26742 85.26 85.127 85.395 -0.5015 18 11 2 0 0 0 0.55144 1 46945 46945 4.3292 0.73274 1 598540 + 61775 19520;19549 41281 42206 71899 71899 -0.0324060121280354 SVSPSKVIL 9 Unmodified _SVSPSKVIL_ 0 0 0 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2866821289062 2 465.286943 928.559333 0.9221 0.00042904 0.43813 0.00020386 1.3602 0.0006329 465.2869771906831 63.508 0.33012 57.332 57.156 57.487 -6.1757 29 18 2 0 0 0 0.16226 1 41099 41099 26.884 4.2256 1 10492000 61776 1554 41282 42207 71900 71900 0.09219528591370363 SVSQLLSLV 9 Unmodified _SVSQLLSLV_ 0 0 0 REV__ENSG00000080200|ENST00000389622|CRYBG3 REV__ENSG00000080200|ENST00000389622|CRYBG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2860412597656 2 473.2844 944.554247 0.8094 0.00038308 0.048083 2.2757E-05 0.85749 0.00040583 473.2844952660102 75.304 0.59542 69.128 68.78 69.376 -6.1757 54 32 2 0 0 0 0.044011 1 49111 49111 47.749 1.7277 1 22064000 + 61777 17660 41283 42208 71901 71901 0.07975224728761532 SVSSAYTI 8 Unmodified _SVSSAYTI_ 0 0 0 ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A ENSG00000168412|ENST00000307161|MTNR1A MSMS AL20221201_MKP_PDAC_01 4 414.2138366699219 2 414.210901 826.407249 NaN NaN NaN NaN NaN NaN NaN 21.795 1 19.06 18.56 19.56 -2.7348 0 0 0 0.97444 1 11694 11694 5.2307 2.3415 1 61778 7760 41284 42209 71902 71902 -0.01289872156189631 SVSTHWRG 8 Unmodified _SVSTHWRG_ 0 0 0 nc|ENSG00000172428|Q8WXC6-1|COPS9 nc|ENSG00000172428|Q8WXC6-1|COPS9 nc|ENSG00000172428|Q8WXC6-1|COPS9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.232177734375 2 465.233033 928.451513 NaN NaN NaN NaN NaN NaN NaN 26.764 1 26.793 26.293 27.293 0.028664 0 0 0 0.9192 1 13893 13893 16.942 4.4107 1 61779 16384 41285 42210 71903 71903 -0.015574232193330317 SVSVDVWH 8 Unmodified _SVSVDVWH_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000460007.1_1_10:29764360-29770575:-|nuORF nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7301635742188 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 28.283 1 28.313 27.813 28.813 0.029564 0 0 0 0.53879 1 14720 14720 38.151 4.0487 1 61780 9939 41286 42211 71904 71904 -0.02159361170720331 SVSVDVWH 8 Unmodified _SVSVDVWH_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;ENST00000460007.1_1_10:29764360-29770575:-|nuORF nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 465.2650451660156 2 464.729792 927.445031 0.9234 0.00042913 -3.1698 -0.0014731 -2.2464 -0.001044 464.72842187659387 59.973 0.47438 53.858 53.701 54.175 -6.1147 33 25 2 0 0 0 8.7369 1 38451 38451 38.151 2.0242 1 31102000 61781 9939 41286 42211 71905 71905 -0.02159361170720331 SVSWAPNWTD 10 Unmodified _SVSWAPNWTD_ 0 0 0 REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7615966796875 2 581.76182 1161.50909 0.9674 0.0005628 -0.33171 -0.00019298 0.6357 0.00036982 581.7616844532308 47.898 0.24519 47.859 47.7 47.946 -0.038643 19 11 2 0 0 0 0.20962 1 25788 25788 32.786 3.7041 1 3814900 + 61782 21513 41287 42212 71906 71906 -0.06520625804432711 SVTAGRLPGTH 11 Unmodified _SVTAGRLPGTH_ 0 0 0 REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2982788085938 2 548.298904 1094.58326 0.53638 0.00029409 -0.034693 -1.9022E-05 0.50168 0.00027507 548.2989318928599 29.03 0.18274 28.968 28.856 29.039 -0.062159 12 7 2 0 0 0 0.37147 1 14995 14995 28.495 11.382 1 4178300 + 61783 26543 41288 42213 71907 71907 0.03974762077768901 SVTAGRLPGTH 11 Unmodified _SVTAGRLPGTH_ 0 0 0 REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.298904 1094.58326 -0.19259 -0.0001056 1.3346 0.00073178 1.142 0.00062618 548.2991443459613 29.074 0.13894 29.074 28.963 29.102 0 0.053075 0.00094085 NaN 28.495 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 752690 + 61784 26543 41288 42213 0.03974762077768901 SVTAGRLPGTH 11 Unmodified _SVTAGRLPGTH_ 0 0 0 REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.298904 1094.58326 0.53638 0.00029409 -0.034693 -1.9022E-05 0.50168 0.00027507 548.2989318928599 29.03 0.18274 28.968 28.856 29.039 -0.062159 -0.053075 -0.00056074 NaN 28.495 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 4178300 + 61785 26543 41288 42213 0.03974762077768901 SVTLDLLTY 9 Unmodified _SVTLDLLTY_ 0 0 0 nc|ENSG00000104983|Q9Y6R9-2|CCDC61;ENSG00000104983|ENST00000595358|CCDC61 nc|ENSG00000104983|Q9Y6R9-2|CCDC61 nc|ENSG00000104983|Q9Y6R9-2|CCDC61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7821044921875 2 512.78169 1023.54883 0.34119 0.00017495 1.9917 0.0010213 2.3329 0.0011963 512.7819281980799 88.732 0.36951 88.227 88.068 88.438 -0.50423 24 15 2 0 0 0 0.2001 1 48522 48522 23.148 0 1 555050 61786 2269 41289 42214 71908 71908 0.03799501146284001 SVTQLQALTL 10 Unmodified _SVTQLQALTL_ 0 0 0 REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.2885131835938 2 537.313689 1072.61282 1.135 0.00060985 -2.6025 -0.0013984 -1.4675 -0.00078853 537.81405002347 86.573 0.33936 80.397 80.266 80.605 -6.1757 29 17 2 0 0 0 0.22636 1 57010 57010 17.113 0 1 6740100 + 61787 25273 41290 42215 71909 71909 0.07942281303235177 SVTQPILCCS 10 Unmodified _SVTQPILCCS_ 0 0 0 REV__ENSG00000163254|ENST00000282141|CRYGC REV__ENSG00000163254|ENST00000282141|CRYGC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.282958984375 2 525.751553 1049.48855 1.0215 0.00053707 3.3325 0.0017521 4.354 0.0022891 525.7515410991253 51.31 0.18233 51.31 51.229 51.412 0 13 7 3 0 0 0 0.19561 1 28295 28295 24.021 4.7636 1 649150 + 61788 21739 41291 42216 71910 71910 -0.0342125578008563 SVTRYMAIAHH 11 Unmodified _SVTRYMAIAHH_ 0 0 0 ENSG00000184194|ENST00000332582|GPR173 ENSG00000184194|ENST00000332582|GPR173 ENSG00000184194|ENST00000332582|GPR173 MSMS AL20221201_MKP_PDAC_01 4 643.3295288085938 2 643.327139 1284.63972 NaN NaN NaN NaN NaN NaN NaN 77.72 1 71.544 71.044 72.044 -6.1757 0 0 0 0.77961 1 50841 50841 13.042 0.80181 1 61789 9228 41292 42217 71911 71911 0.00879066642755788 SVVAEPDNMD 10 Unmodified _SVVAEPDNMD_ 0 0 0 REV__ENST00000487704.5_1_22:32797732-32808215:-|nuORF REV__ENST00000487704.5_1_22:32797732-32808215:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4910888671875 3 359.49034 1075.44919 0.52517 0.00018879 0.83726 0.00030099 1.3624 0.00048978 359.4906343305704 45.978 0.3107 45.978 45.838 46.149 0 22 14 2 0 0 0 0.50362 1 25091 25091 10.315 4.9125 1 8230900 + 61790 18028 41293 42218 71912 71912 -0.08551684529970771 SVVAYLALI 9 Unmodified _SVVAYLALI_ 0 0 0 REV__ENSG00000101213|ENST00000542869|PTK6 REV__ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 948.5779418945312 1 948.576445 947.569169 4.6039 0.0043671 -1.2268 -0.0011637 3.3771 0.0032034 948.5759281508516 99.045 0.15706 99.016 98.92 99.077 -0.028282 8 5 2 0 0 0 0.016184 1 55011 55011 67.344 0 1 4317800 + 61791 18146 41294 42219 71913 71913 0.09328716596746744 SVVAYLALI 9 Unmodified _SVVAYLALI_ 0 0 0 REV__ENSG00000101213|ENST00000542869|PTK6 REV__ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5777587890625 1 948.576445 947.569169 1.1426 0.0010839 1.0468 0.00099294 2.1894 0.0020768 948.5775601405941 100.93 0.11371 94.757 94.701 94.815 -6.1757 15 6 3 0 0 0 0.012148 1 67609 67609 74.423 0.026461 1 57900000 + 61792 18146 41294 42219 71914 71914 0.09328716596746744 SVVAYLALI 9 Unmodified _SVVAYLALI_ 0 0 0 REV__ENSG00000101213|ENST00000542869|PTK6 REV__ENSG00000101213|ENST00000542869|PTK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7995300292969 2 474.791861 947.569169 1.5771 0.00074881 1.0648 0.00050558 2.642 0.0012544 474.7918082251735 100.94 0.078499 94.767 94.701 94.78 -6.1757 9 4 3 0 0 0 0.023164 1 67617 67617 60.39 0.59434 1 54502000 + 61793 18146 41294 42219 71915 71915 0.09328716596746744 SVVAYLALI 9 Unmodified _SVVAYLALI_ 0 0 0 REV__ENSG00000101213|ENST00000542869|PTK6 REV__ENSG00000101213|ENST00000542869|PTK6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 948.576445 947.569169 4.6039 0.0043671 -1.2268 -0.0011637 3.3771 0.0032034 948.5759281508516 99.045 0.15706 99.016 98.92 99.077 -0.028282 0 0 NaN 67.344 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 4317800 + 61794 18146 41294 42219 0.09328716596746744 SVVDISQQY 9 Unmodified _SVVDISQQY_ 0 0 0 ENSG00000168303|ENST00000306984|MPLKIP ENSG00000168303|ENST00000306984|MPLKIP ENSG00000168303|ENST00000306984|MPLKIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2595825195312 2 519.758746 1037.50294 0.80304 0.00041739 -0.2488 -0.00012931 0.55424 0.00028807 519.7585719128062 45.981 0.45483 45.981 45.819 46.274 0 63 21 4 0 0 0 0.026094 2 25048 25048;25165 57.471 28.985 1 106610000 61795 7747 41295 42220 71916;71917 71916 -0.014311440359506378 SVVDISQQY 9 Unmodified _SVVDISQQY_ 0 0 0 ENSG00000168303|ENST00000306984|MPLKIP ENSG00000168303|ENST00000306984|MPLKIP ENSG00000168303|ENST00000306984|MPLKIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.75927734375 2 519.758746 1037.50294 1.3168 0.0006844 -0.91295 -0.00047451 0.40382 0.00020989 519.7581861556608 53.874 0.67183 48.07 47.772 48.444 -5.8042 119 40 4 0 0 0 0.095405 2 34197 34061;34197 34.102 5.6156 1 211990000 61796 7747 41295 42220 71918;71919 71919 -0.014311440359506378 SVVEFSGVVL 10 Unmodified _SVVEFSGVVL_ 0 0 0 REV__ENSG00000119820|ENST00000238831|YIPF4 REV__ENSG00000119820|ENST00000238831|YIPF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2947998046875 2 518.289682 1034.56481 -0.034614 -1.794E-05 2.2628 0.0011728 2.2281 0.0011548 518.290797253418 51.249 0.4708 50.835 50.518 50.988 -0.41351 47 23 3 0 0 0 0.35903 1 27519 27519 24.021 4.5816 1 5275500 + 61797 19214 41296 42221 71920 71920 0.04891207383184337 SVVELINHY 9 Unmodified _SVVELINHY_ 0 0 0 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000117461|Q92569-3|PIK3R3 ENSG00000145675|ENST00000521381|PIK3R1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2853393554688 2 537.284931 1072.55531 0.66888 0.00035938 -0.8707 -0.00046782 -0.20183 -0.00010844 537.2848560979444 62.255 1.3153 56.079 55.404 56.719 -6.1757 90 70 2 0 0 0 0.0082485 1 39931 39931 96.285 54.445 1 221170000 61798 5710;3305 41297 42222 71921 71921 0.021934390976412033 SVVEPQPVF 9 Unmodified _SVVEPQPVF_ 0 0 0 nc|ENSG00000084093|Q13127-2|REST;nc|ENSG00000084093|Q13127-3|REST;nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST nc|ENSG00000084093|Q13127-2|REST nc|ENSG00000084093|Q13127-2|REST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2521667480469 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 59.176 1 59.176 58.676 59.676 0 0 0 0 0.46757 1 32963 32963 16.942 5.8278 1 61799 1383 41298 42223 71922 71922 0.022706516946755073 SVVGAISSY 9 Unmodified _SVVGAISSY_ 0 0 0 nc|ENSG00000093217|O75191-2|XYLB;ENSG00000093217|ENST00000207870|XYLB nc|ENSG00000093217|O75191-2|XYLB nc|ENSG00000093217|O75191-2|XYLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.4574584960938 1 882.456724 881.449448 0.43118 0.00038049 1.219 0.0010757 1.6502 0.0014562 882.4576702988107 49.382 0.14465 49.382 49.296 49.441 0 9 6 2 0 0 0 0.026094 1 27174 27174 57.471 11.45 1 1217100 61800 1634 41299 42224 71923 71923 0.003981032521892303 SVVGETKEREY 11 Unmodified _SVVGETKEREY_ 0 0 0 REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P MSMS AL20221201_MKP_PDAC_01 4 432.8861999511719 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 20.429 1 17.736 17.236 18.236 -2.693 0 0 0 0.91362 1 10884 10884 6.6235 1.2207 1 + 61801 30038 41300 42225 71924 71924 -0.0002474436994361895 SVVGVLVHY 9 Unmodified _SVVGVLVHY_ 0 0 0 nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7796325683594 2 486.779285 971.544017 NaN NaN NaN NaN NaN NaN NaN 58.554 1 58.064 57.564 58.564 -0.49079 0 0 0 0.17175 1 31844 31844 34.187 18.419 1 61802 5896 41301 42226 71925 71925 0.057106617941940385 SVVGVLVHY 9 Unmodified _SVVGVLVHY_ 0 0 0 nc|ENSG00000148143|Q96JM2-3|ZNF462;ENSG00000148143|ENST00000277225|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 nc|ENSG00000148143|Q96JM2-3|ZNF462 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2412719726562 2 486.779285 971.544017 0.92806 0.00045176 -1.7418 -0.00084789 -0.81379 -0.00039613 486.7794853656351 58.197 0.15663 58.137 58.058 58.215 -0.060722 10 7 2 0 0 0 0.18941 1 31694 31694 14.582 10.252 1 1413100 61803 5896 41301 42226 71926 71926 0.057106617941940385 SVVGWAPR 8 Unmodified _SVVGWAPR_ 0 0 0 REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2410278320312 2 436.24287 870.471186 -0.18424 -8.0373E-05 -4.0304 -0.0017583 -4.2147 -0.0018386 436.24089233760566 22.732 0.16232 22.732 22.653 22.816 0 12 7 2 0 0 0 0.80311 1 11560 11560 4.756 0 1 547040 + 61804 27125 41302 42227 71927 71927 0.030769527914117134 SVVGWAPR 8 Unmodified _SVVGWAPR_ 0 0 0 REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 436.24287 870.471186 -0.18424 -8.0373E-05 -4.0304 -0.0017583 -4.2147 -0.0018386 436.24089233760566 22.732 0.16232 22.732 22.653 22.816 0 0 0 NaN 4.756 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 547040 + 61805 27125 41302 42227 0.030769527914117134 SVVSLSESY 9 Unmodified _SVVSLSESY_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.471923828125 1 970.472768 969.465492 0.041548 4.0321E-05 -0.44363 -0.00043053 -0.40208 -0.00039021 970.471903681665 46.92 0.24286 46.92 46.819 47.062 0 18 11 3 0 0 0 0.0067112 1 25649 25649 112.59 61.738 1 6023800 61806 832 41303 42228 71928 71928 -0.02046235301577326 SVVSLSESY 9 Unmodified _SVVSLSESY_ 0 0 0 ENSG00000060749|ENST00000650167|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1 ENSG00000060749|ENST00000650167|QSER1 ENSG00000060749|ENST00000650167|QSER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.4757690429688 1 970.472768 969.465492 0.49893 0.0004842 -0.042826 -4.1562E-05 0.4561 0.00044264 970.4732409185272 54.655 0.19954 48.789 48.729 48.929 -5.8653 15 11 2 0 0 0 0.0018186 1 34697 34697 133.7 76.231 1 12076000 61807 832 41303 42228 71929 71929 -0.02046235301577326 SVVWPHRL 8 Unmodified _SVVWPHRL_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7345275878906 2 497.285069 992.555585 0.25351 0.00012607 -1.7236 -0.00085713 -1.4701 -0.00073107 497.2842224891264 50.444 0.16495 50.444 50.331 50.495 0 12 7 2 0 0 0 8.7369 1 27835 27835 2.5775 0 1 1476800 + 61808 21501 41304 42229 71930 71930 0.05900903608164754 SVWLDYVGSV 10 Unmodified _SVWLDYVGSV_ 0 0 0 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3;nc|ENSG00000140538|Q16288-2|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 nc|ENSG00000140538|Q16288-5|NTRK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7824096679688 2 562.784764 1123.55498 NaN NaN NaN NaN NaN NaN NaN 71.989 1 71.989 71.489 72.489 0 0 0 0 0.99248 1 40091 40091 1.4819 0 1 61809 5250 41305 42230 71931 71931 -0.0018598062220007705 SVWSAVDIR 9 Unmodified _SVWSAVDIR_ 0 0 0 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.8076171875 2 516.777274 1031.53999 0.83126 0.00042958 0.49878 0.00025776 1.33 0.00068733 516.7773886933921 34.328 0.39806 30.273 30.081 30.479 -4.0545 38 22 2 0 0 0 0.15672 1 19851 19851 6.2058 0 1 18685000 61810 6738 41306 42231 71932 71932 0.02548572300474916 SVWWFYPF 8 Unmodified _SVWWFYPF_ 0 0 0 ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF ENST00000262646.11_1_8:61534433-61534553:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7678833007812 2 566.268553 1130.52255 0.77613 0.0004395 0.99396 0.00056285 1.7701 0.0010023 566.269049054618 66.993 0.8069 60.817 60.245 61.052 -6.1757 77 45 2 0 0 0 8.7369 1 43472 43472 9.3474 0 1 30184000 61811 11272 41307 42232 71933 71933 -0.03748723234548379 SVWYAVDVY 9 Unmodified _SVWYAVDVY_ 0 0 0 ENSG00000113946|ENST00000264734|CLDN16 ENSG00000113946|ENST00000264734|CLDN16 ENSG00000113946|ENST00000264734|CLDN16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2667846679688 2 551.266207 1100.51786 0.34654 0.00019104 -0.91582 -0.00050486 -0.56928 -0.00031382 551.265478312728 58.825 0.26146 58.334 58.212 58.474 -0.49079 22 12 2 0 0 0 0.41742 1 31983 31983 11.64 0 1 2945000 61812 3010 41308 42233 71934 71934 -0.028376521679547295 SVWYERYK 8 Unmodified _SVWYERYK_ 0 0 0 ENSG00000164241|ENST00000296662|C5orf63 ENSG00000164241|ENST00000296662|C5orf63 ENSG00000164241|ENST00000296662|C5orf63 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.7461547851562 3 377.525825 1129.55564 0.26812 0.00010122 -0.61449 -0.00023199 -0.34637 -0.00013077 377.52569512278484 39.461 0.22655 39.473 39.323 39.55 0.011452 17 10 3 0 0 0 8.7369 1 20937 20937 0.40072 0 1 2883700 61813 7166 41309 42234 71935 71935 -0.003951411825028117 SVYDQVLCGF 10 Unmodified _SVYDQVLCGF_ 0 0 0 REV__ENSG00000132669|ENST00000255006|RIN2 REV__ENSG00000132669|ENST00000255006|RIN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7677612304688 2 565.762975 1129.5114 0.93317 0.00052795 -0.81521 -0.00046122 0.11796 6.6737E-05 565.7625077009619 56.447 0.18581 50.47 50.375 50.561 -5.9769 18 10 2 0 0 0 0.17708 1 35953 35953 23.79 0 1 23242000 + 61814 19870 41310 42235 71936 71936 -0.04817913390979811 SVYGERRVTV 10 Unmodified _SVYGERRVTV_ 0 0 0 ENSG00000188573|ENST00000338333|FBLL1 ENSG00000188573|ENST00000338333|FBLL1 ENSG00000188573|ENST00000338333|FBLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2157287597656 3 389.21565 1164.62512 0.2113 8.2239E-05 -0.2037 -7.9284E-05 0.0075935 2.9555E-06 389.2155305713 43.418 0.17859 43.108 43.007 43.185 -0.31039 12 8 2 0 0 0 0.48629 1 23110 23110 17.049 1.31 1 8212700 61815 9671 41311 42236 71937 71937 0.04939317766275053 SVYMVCFI 8 Unmodified _SVYMVCFI_ 0 0 0 REV__ENST00000604081.1_1_12:54389291-54389333:-|nuORF REV__ENST00000604081.1_1_12:54389291-54389333:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7424926757812 2 481.229725 960.444896 NaN NaN NaN NaN NaN NaN NaN 31.34 1 31.34 30.84 31.84 0 0 0 0 0.95201 1 16320 16320 10.183 0.83596 1 + 61816 29283 41312 42237 71938 71938 -0.0369082048657674 SWCKCFVASK 10 Unmodified _SWCKCFVASK_ 0 0 0 REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF REV__ENST00000490980.1_1_10:99080712-99081474:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.8539123535156 3 386.852667 1157.53617 NaN NaN NaN NaN NaN NaN NaN 94.042 1 87.866 87.366 88.366 -6.1757 0 0 0 0.97302 1 62279 62279 1.7423 0.28716 1 + 61817 27885 41313 42238 71939 71939 -0.036295567892693725 SWDDSSDSYW 10 Unmodified _SWDDSSDSYW_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2290649414062 2 624.228007 1246.44146 0.66865 0.00041739 1.0085 0.00062953 1.6772 0.0010469 624.2284531664175 60.196 0.29946 60.196 60.068 60.368 0 33 12 3 0 0 0 0.33553 1 33561 33561 25.399 21.07 1 1846000 61818 10694 41314 42239 71940 71940 -0.17190120525901875 SWDEHVFEL 9 Unmodified _SWDEHVFEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2650146484375 2 581.264196 1160.51384 0.15332 8.9117E-05 -0.79785 -0.00046376 -0.64453 -0.00037465 581.2638558668328 72.149 0.20766 72.149 72.032 72.24 0 13 9 2 0 0 0 0.41742 1 40175 40175 11.64 6.8843 1 895710 61819 3160 41315 42240 71941 71941 -0.05999741661662483 SWDEHVFEL 9 Unmodified _SWDEHVFEL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.4292602539062 2 581.264196 1160.51384 NaN NaN NaN NaN NaN NaN NaN 72.56 1 72.084 71.584 72.584 -0.47609 0 0 0 0.6557 1 39709 39709 10.824 1.4765 1 61820 3160 41315 42240 71942 71942 -0.05999741661662483 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7949829101562 2 537.795132 1073.57571 0.2585 0.00013902 -0.1686 -9.067E-05 0.089907 4.8352E-05 537.7949639514852 83.074 0.8775 83.074 82.506 83.383 0 117 44 4 0 0 0 0.1773 1 46106 46106 25.399 0 1 12289000 + 61821 30087 41316 42241 71943 71943 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7949829101562 2 537.795132 1073.57571 0.41506 0.00022322 -0.088946 -4.7835E-05 0.32612 0.00017538 537.7947154284304 62.813 0.36 62.326 62.162 62.522 -0.48617 40 17 3 0 0 0 0.1773 2 34204 34204;34307 25.399 0 1 25110000 + 61822 30087 41316 42241 71944;71945 71944 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7958374023438 2 537.795132 1073.57571 0.40621 0.00021846 0.27437 0.00014756 0.68058 0.00036601 537.7951987075315 83.627 0.82308 83.13 82.642 83.466 -0.49751 101 33 5 0 0 0 0.1773 2 45715 45715;45817 25.399 0 1 30409000 + 61823 30087 41316 42241 71946;71947 71946 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7963256835938 2 537.795132 1073.57571 0.74473 0.00040051 1.0189 0.00054798 1.7637 0.00094849 537.7955581700502 82.944 0.28553 83.006 82.842 83.127 0.062004 24 10 3 0 0 0 0.1773 1 45869 45869 25.399 0 1 5215900 + 61824 30087 41316 42241 71948 71948 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7953491210938 2 537.795132 1073.57571 0.66525 0.00035777 0.94589 0.0005087 1.6111 0.00086646 537.7951813223718 68.391 0.58387 62.215 62.028 62.612 -6.1757 76 34 3 0 0 0 0.10734 2 44591 44591;44716 32.305 0 1 73486000 + 61825 30087 41316 42241 71949;71950 71949 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.795132 1073.57571 0.40621 0.00021846 0.27437 0.00014756 0.68058 0.00036601 537.7951987075315 83.627 0.82308 83.13 82.642 83.466 -0.49751 0.059959 6.8039E-05 NaN 25.399 101 33 5 NaN NaN NaN NaN 0 NaN NaN 0 30409000 + 61826 30087 41316 42241 0.04186609757448423 SWDLEALLK 9 Unmodified _SWDLEALLK_ 0 0 0 REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant REV__REM2|p.R53W|1|0.18|ENSG00000139890|chr14:22884727-22884727|C/T|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.795132 1073.57571 0.74473 0.00040051 1.0189 0.00054798 1.7637 0.00094849 537.7955581700502 82.944 0.28553 83.006 82.842 83.127 0.062004 -0.063954 0.00086889 NaN 25.399 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5215900 + 61827 30087 41316 42241 0.04186609757448423 SWDPAGWG 8 Unmodified _SWDPAGWG_ 0 0 0 REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4 REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.187744140625 2 438.18776 874.360967 -0.14927 -6.5409E-05 -0.47157 -0.00020664 -0.62084 -0.00027205 438.18769892164255 56.261 0.31141 56.261 56.049 56.361 0 25 14 2 0 0 0 0.80143 1 31335 31335 5.7604 0.52976 1 5811000 + 61828 17752 41317 42242 71951 71951 -0.08123892267622068 SWEIHHFF 8 Unmodified _SWEIHHFF_ 0 0 0 ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29 ENSG00000203661|ENST00000641363|OR2T5 ENSG00000203661|ENST00000641363|OR2T5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7595825195312 2 551.758884 1101.50321 0.41007 0.00022626 0.60711 0.00033498 1.0172 0.00056124 552.2597488801141 88.851 0.19434 88.851 88.759 88.954 0 22 13 2 0 0 0 0.80975 1 49160 49160 0.79363 0 1 232570 61829 9087 41318 42243 71952 71952 -0.04347679525426429 SWEVGGFP 8 Unmodified _SWEVGGFP_ 0 0 0 ENST00000439023.3_3_22:30806632-30824658:+|nuORF ENST00000439023.3_3_22:30806632-30824658:+|nuORF ENST00000439023.3_3_22:30806632-30824658:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 878.4052124023438 1 878.404295 877.397018 0.11861 0.00010419 1.0486 0.00092113 1.1673 0.0010253 878.4069113368265 97.29 0.78693 97.29 96.896 97.683 0 103 37 3 0 0 0 0.80975 2 53694 53694;53812 0.79363 0 1 2044500 61830 13368 41319 42244 71953;71954 71953 -0.04658435090743751 SWGPQWGMN 9 Unmodified _SWGPQWGMN_ 0 0 0 ENSG00000103811|ENST00000220166|CTSH;ENST00000527715.5_1_15:79214474-79217794:-|nuORF;ENST00000533777.5_1_15:79214474-79223953:-|nuORF;ENST00000534237.5_1_15:79214474-79224366:-|nuORF ENSG00000103811|ENST00000220166|CTSH ENSG00000103811|ENST00000220166|CTSH MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7276611328125 2 531.726726 1061.4389 1.2047 0.00064058 0.93904 0.00049931 2.1438 0.0011399 531.7272042428032 96.273 0.92546 90.098 89.696 90.622 -6.1757 83 55 2 0 0 0 0.55144 1 63639 63639 4.3292 0.38484 1 15105000 61831 2162 41320 42245 71955 71955 -0.08936202673885418 SWGWKGFLSPP 11 Unmodified _SWGWKGFLSPP_ 0 0 0 ENST00000356721.3_1_16:48399534-48399783:-|nuORF ENST00000356721.3_1_16:48399534-48399783:-|nuORF ENST00000356721.3_1_16:48399534-48399783:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2171020507812 3 421.216991 1260.62914 -0.25393 -0.00010696 1.9723 0.00083076 1.7184 0.0007238 421.2178814568248 36.987 0.2266 37.009 36.881 37.108 0.021545 30 10 4 0 0 0 0.65846 1 19607 19607 4.1166 0.27072 1 3342200 61832 12098 41321 42246 71956 71956 0.009254072600015206 SWIGLHLPR 9 Unmodified _SWIGLHLPR_ 0 0 0 ENST00000483490.1_1_1:92948940-92950129:-|nuORF ENST00000483490.1_1_1:92948940-92950129:-|nuORF ENST00000483490.1_1_1:92948940-92950129:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2099304199219 3 360.210059 1077.60835 -0.3235 -0.00011653 -2.357 -0.00084902 -2.6805 -0.00096554 360.21016878899616 41.811 0.24453 41.504 41.375 41.619 -0.30682 16 11 2 0 0 0 0.32871 1 22166 22166 20.415 6.7997 1 22227000 61833 14131 41322 42247 71957 71957 0.07264861670978462 SWIIMNKPVYI 11 Unmodified _SWIIMNKPVYI_ 0 0 0 nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2536010742188 3 455.252936 1362.73698 0.92082 0.00041921 0.93903 0.0004275 1.8599 0.0008467 455.25339191642934 77.868 0.42854 71.692 71.292 71.72 -6.1757 42 24 2 0 0 0 0.42951 1 50919 50919 19.987 2.1237 1 20332000 61834 6360 41323 42248 71958 71958 0.07012035799061778 SWIRAKYEQLL 11 Unmodified _SWIRAKYEQLL_ 0 0 0 nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 nc|ENSG00000135439|Q99490-2|AGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.5990295410156 3 469.597871 1405.77178 0.25659 0.00012049 0.3412 0.00016023 0.5978 0.00028072 469.59797002449477 39.89 0.87904 39.895 39.503 40.382 0.0050583 79 41 3 0 0 0 0.72981 1 21457 21457 1.4551 0 1 3239400 61835 4706 41324 42249 71959 71959 0.08512994931356843 SWIVVAERY 9 Unmodified _SWIVVAERY_ 0 0 0 ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8695983886719 3 374.869591 1121.58694 -0.29848 -0.00011189 -0.19104 -7.1616E-05 -0.48952 -0.00018351 374.8694614195548 35.443 0.22825 35.443 35.306 35.534 0 18 11 2 0 0 0 0.49766 1 18692 18692 7.609 0.50723 1 9794300 61836 15567 41325 42250 71960 71960 0.031014318516099593 SWIVVAERY 9 Unmodified _SWIVVAERY_ 0 0 0 ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF ENST00000582124.1_1_17:15877924-15878653:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 374.869591 1121.58694 0.81229 0.0003045 -1.4074 -0.00052759 -0.59511 -0.00022309 374.86939497696 40.079 0.045757 35.55 35.512 35.558 -4.5294 0.053489 -0.0011917 NaN 7.609 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 10628000 61837 15567 41325 42250 0.031014318516099593 SWKLPRGP 8 Unmodified _SWKLPRGP_ 0 0 0 REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7722473144531 2 470.771794 939.529036 -0.17168 -8.0823E-05 1.606 0.00075607 1.4343 0.00067525 470.7723916382799 32.823 0.21581 32.853 32.763 32.979 0.029743 25 9 4 0 0 0 0.80763 1 17248 17248 2.0598 0 1 14204000 + 61838 27928 41326 42251 71961 71961 0.0568521471685699 SWKLPRGP 8 Unmodified _SWKLPRGP_ 0 0 0 REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.771794 939.529036 -0.56272 -0.00026491 1.747 0.00082245 1.1843 0.00055754 470.7725637258167 32.917 0.1974 32.917 32.811 33.008 0 0.026256 -8.9374E-05 NaN 2.0598 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2429100 + 61839 27928 41326 42251 0.0568521471685699 SWKLPRGP 8 Unmodified _SWKLPRGP_ 0 0 0 REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.771794 939.529036 -0.21644 -0.0001019 3.0092 0.0014167 2.7928 0.0013148 470.7729135235097 33.061 0.14915 32.902 32.787 32.936 -0.15918 0.011474 0.0010991 NaN 2.0598 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1051100 + 61840 27928 41326 42251 0.0568521471685699 SWKWTVEHI 9 Unmodified _SWKWTVEHI_ 0 0 0 nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1 nc|ENSG00000076242|P40692-2|MLH1 nc|ENSG00000076242|P40692-2|MLH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8735656738281 3 395.873224 1184.59784 0.032659 1.2929E-05 0.95173 0.00037676 0.98439 0.00038969 395.8734859770832 23.271 0.14525 23.288 23.221 23.366 0.01749 9 6 2 0 0 0 0.41742 1 11987 11987 7.609 2.893 1 5158200 61841 1182 41327 42252 71962 71962 0.012928342258874181 SWKWTVEHI 9 Unmodified _SWKWTVEHI_ 0 0 0 nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1 nc|ENSG00000076242|P40692-2|MLH1 nc|ENSG00000076242|P40692-2|MLH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8731994628906 3 395.873224 1184.59784 0.22973 9.0945E-05 -0.42486 -0.00016819 -0.19513 -7.7246E-05 395.8729673922807 26.002 0.42414 23.051 22.857 23.281 -2.9511 75 27 4 0 0 0 0.41742 1 14298 14298 7.609 0.50723 1 62126000 61842 1182 41327 42252 71963 71963 0.012928342258874181 SWLDNLASQL 10 Unmodified _SWLDNLASQL_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS AL20221201_MKP_PDAC_01 4 382.5303955078125 3 382.864506 1145.57169 NaN NaN NaN NaN NaN NaN NaN 23.338 1 20.56 20.06 21.06 -2.7784 0 0 0 0.94046 1 12627 12627 6.1918 0.46 1 + 61843 24211 41328 42253 71964 71964 0.0047252026377009315 SWLHFLRRF 9 Unmodified _SWLHFLRRF_ 0 0 0 ENST00000376511.6_1_6:30569009-30569351:-|nuORF ENST00000376511.6_1_6:30569009-30569351:-|nuORF ENST00000376511.6_1_6:30569009-30569351:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.8532104492188 2 631.351274 1260.688 0.21373 0.00013494 0.23973 0.00015136 0.45346 0.00028629 631.8525762023468 76.188 0.40555 76.236 76.086 76.492 0.047943 42 16 3 0 0 0 0.43463 1 42115 42115 10.824 0 1 23370000 61844 12498 41329 42254 71965 71965 0.06807928344960601 SWLLFRWWRRR 11 Unmodified _SWLLFRWWRRR_ 0 0 0 ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF ENST00000463462.5_1_7:148982563-148988696:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 831.4672241210938 2 831.468035 1660.92152 NaN NaN NaN NaN NaN NaN NaN 47.357 1 47.357 46.857 47.857 0 0 0 0 0.9435 1 25924 25924 0 0 1 61845 13175 41330 42255 71966 71966 0.11749404784450235 SWLLPPCFCLL 11 Unmodified _SWLLPPCFCLL_ 0 0 0 REV__ENST00000542933.5_1_12:122233460-122233676:-|nuORF REV__ENST00000542933.5_1_12:122233460-122233676:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3325805664062 2 646.332513 1290.65047 NaN NaN NaN NaN NaN NaN NaN 92.766 1 92.766 92.266 93.266 0 0 0 0 0.9435 1 51293 51293 0 0 1 + 61846 28626 41331 42256 71967 71967 0.01677332972849399 SWLRENFDHTY 11 Unmodified _SWLRENFDHTY_ 0 0 0 nc|ENSG00000131044|Q3SXZ7-3|TTLL9;nc|ENSG00000131044|Q3SXZ7-2|TTLL9;ENSG00000131044|ENST00000535842|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 nc|ENSG00000131044|Q3SXZ7-3|TTLL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.8931274414062 3 489.893236 1466.65788 0.78067 0.00038244 0.12838 6.2892E-05 0.90905 0.00044534 489.89329398279807 42.93 0.38925 38.246 38.041 38.431 -4.6846 51 24 3 0 0 0 0.40509 1 26087 26087 21.241 9.0138 1 17395000 61847 4292 41332 42257 71968 71968 -0.05678519901539403 SWLRRMWSWSW 11 Unmodified _SWLRRMWSWSW_ 0 0 0 ENST00000494566.5_1_11:64110692-64111255:+|nuORF ENST00000494566.5_1_11:64110692-64111255:+|nuORF ENST00000494566.5_1_11:64110692-64111255:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.9254760742188 3 527.590834 1579.75067 0.32076 0.00016923 0.24669 0.00013015 0.56745 0.00029938 527.5912239347474 48.449 0.31535 48.406 48.239 48.555 -0.04369 34 15 4 0 0 0 0.74096 1 26136 26136 0.40827 0.31342 1 3169400 61848 14332 41333 42258 71969 71969 -0.016012936491279106 SWLVGRDVL 9 Unmodified _SWLVGRDVL_ 0 0 0 ENST00000438808.1_1_1:11938291-11938936:+|nuORF ENST00000438808.1_1_1:11938291-11938936:+|nuORF ENST00000438808.1_1_1:11938291-11938936:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7950439453125 2 522.795466 1043.57638 -0.25034 -0.00013088 -0.16927 -8.8495E-05 -0.41961 -0.00021937 522.7953373016616 27.065 0.26523 27.065 26.93 27.196 0 40 12 4 0 0 0 0.49272 1 14001 14001 7.9102 0 1 39033000 61849 13367 41334 42259 71970 71970 0.056334491971938405 SWLWLYIR 8 Unmodified _SWLWLYIR_ 0 0 0 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 ENSG00000277481|ENST00000620267|PKD1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5454406738281 3 379.54656 1135.61785 -0.30976 -0.00011757 -2.1266 -0.00080714 -2.4363 -0.00092471 379.5455891870084 36.913 0.35783 36.664 36.51 36.867 -0.2497 41 15 4 0 0 0 0.76266 1 19455 19455 8.7454 2.5536 1 16661000 61850 10925 41335 42260 71971 71971 0.05546629956484139 SWMELPGLKF 10 Oxidation (M) _SWM(Oxidation (M))ELPGLKF_ SWM(1)ELPGLKF SWM(56)ELPGLKF 0 0 1 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3108520507812 2 612.310092 1222.60563 0.42664 0.00026124 -2.6327 -0.001612 -2.206 -0.0013508 612.8097155006402 77.64 0.54495 77.69 77.296 77.841 0.05011 79 22 5 0 0 0 0.060508 2 42764 42764;42870 55.503 38.56 1 16913000 61851 7249 41336 42261 71972;71973 71972 1255 0.0032322543113423308 SWMELPGLKF 10 Oxidation (M) _SWM(Oxidation (M))ELPGLKF_ SWM(1)ELPGLKF SWM(40)ELPGLKF 0 0 1 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MSMS AL20221201_MKP_PDAC_01 4 612.3104248046875 2 612.310092 1222.60563 NaN NaN NaN NaN NaN NaN NaN 91.535 1 85.359 84.859 85.859 -6.1757 0 0 0 0.24492 1 60509 60509 40.239 25.401 1 61852 7249 41336 42261 71974 71974 1255 0.0032322543113423308 SWMPTVVIYL 10 Unmodified _SWMPTVVIYL_ 0 0 0 REV__ENST00000273261.7_1_3:66430417-66430615:-|nuORF REV__ENST00000273261.7_1_3:66430417-66430615:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3128662109375 2 604.822835 1207.63112 0.51743 0.00031296 -3.9587 -0.0023943 -3.4413 -0.0020813 604.8190867036485 99.293 0.21062 93.117 92.99 93.201 -6.1757 25 11 3 0 0 0 0.52888 1 66042 66042 14.838 3.198 1 165850000 + 61853 25155 41337 42262 71975 71975 0.035606999535957584 SWPEGHFATI 10 Unmodified _SWPEGHFATI_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.7744140625 2 572.774731 1143.53491 0.42558 0.00024376 -1.771 -0.0010144 -1.3454 -0.00077063 572.7724418256223 58.463 0.90131 57.972 57.389 58.29 -0.49079 98 43 4 0 0 0 0.16524 2 31843 31738;31843 37.974 7.3375 1 8560900 61854 1846 41338 42263 71976;71977 71977 -0.031117315621258967 SWPEGLLFS 9 Unmodified _SWPEGLLFS_ 0 0 0 REV__ENST00000376888.6_1_6:29625018-29635699:+|nuORF REV__ENST00000376888.6_1_6:29625018-29635699:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2615356445312 2 518.260925 1034.5073 0.13942 7.2256E-05 0.013423 6.9568E-06 0.15284 7.9213E-05 518.2612494121987 85.04 0.3335 78.864 78.689 79.023 -6.1757 40 19 3 0 0 0 0.10734 1 55951 55951 32.305 2.0807 1 17218000 + 61855 26234 41339 42264 71978 71978 -0.00857634822386899 SWPKIQALCF 10 Carbamidomethyl (C) _SWPKIQALC(Carbamidomethyl (C))F_ SWPKIQALC(1)F SWPKIQALC(83)F 0 1 0 nc|ENSG00000017483|Q8WUX1-2|SLC38A5;ENSG00000017483|ENST00000620913|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 nc|ENSG00000017483|Q8WUX1-2|SLC38A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3222045898438 2 625.323534 1248.63251 0.9539 0.0005965 -0.035735 -2.2346E-05 0.91817 0.00057415 625.3233683056475 95.263 0.2647 89.087 88.931 89.195 -6.1757 25 14 2 0 0 0 0.012329 1 63065 63065 83.429 14.091 1 13807000 61856 504 41340 42265 71979 71979 35 0.01814334042342125 SWPNGISVDY 10 Unmodified _SWPNGISVDY_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2685546875 2 569.264196 1136.51384 0.56271 0.00032033 1.0875 0.00061906 1.6502 0.00093939 569.2648529435195 52.155 0.1633 52.096 52.005 52.168 -0.058918 16 7 3 0 0 0 0.50362 1 28259 28259 16.149 7.4037 1 1565100 61857 3705 41341 42266 71980 71980 -0.048957416616758564 SWPRSKEGAL 10 Unmodified _SWPRSKEGAL_ 0 0 0 REV__ENSG00000114923|ENST00000358055|SLC4A3 REV__ENSG00000114923|ENST00000358055|SLC4A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5373229980469 3 377.536612 1129.58801 0.54646 0.00020631 -0.20306 -7.6661E-05 0.3434 0.00012965 377.53644231419 25.068 0.23812 22.184 22.05 22.289 -2.8831 48 27 2 0 0 0 0.48505 1 13642 13642 10.899 2.9536 1 13660000 + 61858 18942 41342 42267 71981 71981 0.028396462205364514 SWPTRFAKF 9 Unmodified _SWPTRFAKF_ 0 0 0 ENST00000413021.2_2_16:68293563-68293791:+|nuORF ENST00000413021.2_2_16:68293563-68293791:+|nuORF ENST00000413021.2_2_16:68293563-68293791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8725280761719 3 380.538064 1138.59236 0.33495 0.00012746 0.24384 9.2789E-05 0.57879 0.00022025 380.53815426922455 40.814 0.24249 40.812 40.689 40.931 -0.0017891 29 11 3 0 0 0 0.34134 1 21765 21765 15.248 3.0078 1 14437000 61859 12991 41343 42268 71982 71982 0.028611554340841394 SWRQQLKL 8 Unmodified _SWRQQLKL_ 0 0 0 ENST00000552540.5_2_12:57107337-57108468:-|nuORF ENST00000552540.5_2_12:57107337-57108468:-|nuORF ENST00000552540.5_2_12:57107337-57108468:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 353.5429382324219 3 353.541697 1057.60326 NaN NaN NaN NaN NaN NaN NaN 37.112 1 32.829 32.329 33.329 -4.2835 0 0 0 0.95973 1 21749 21749 6.2058 0 1 61860 15179 41344 42269 71983 71983 0.07676557808372309 SWRRRRWKRKR 11 Unmodified _SWRRRRWKRKR_ 0 0 0 ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.671630859375 3 557.673214 1669.99781 NaN NaN NaN NaN NaN NaN NaN 14.841 1 14.846 14.346 15.346 0.0057774 0 0 0 0.9435 1 7375 7375 0 0 1 61861 11226 41345 42270 71984 71984 0.18961221404470052 SWSEAERFAP 10 Unmodified _SWSEAERFAP_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7305297851562 2 590.275095 1178.53564 0.093065 5.4934E-05 2.5121 0.0014828 2.6052 0.0015378 590.2778196905647 49.08 0.38285 49.08 48.874 49.256 0 26 18 2 0 0 0 0.23325 1 26902 26902 10.074 0 1 2606300 + 61862 29667 41346 42271 71985 71985 -0.046489369130767955 SWSEKQVHF 9 Unmodified _SWSEKQVHF_ 0 0 0 REV__ENST00000471197.1_1_9:74971010-74971881:-|nuORF REV__ENST00000471197.1_1_9:74971010-74971881:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.1893005371094 3 383.189212 1146.54581 -0.28847 -0.00011054 0.53578 0.00020531 0.24731 9.4767E-05 383.1893209795465 34.819 0.22292 34.627 34.477 34.7 -0.19131 12 9 2 0 0 0 0.54444 1 18217 18217 2.7352 0.99292 1 2324300 + 61863 27490 41347 42272 71986 71986 -0.021603291878591335 SWSEKQVHF 9 Unmodified _SWSEKQVHF_ 0 0 0 REV__ENST00000471197.1_1_9:74971010-74971881:-|nuORF REV__ENST00000471197.1_1_9:74971010-74971881:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1894226074219 3 383.189212 1146.54581 1.3183 0.00050514 0.14168 5.4289E-05 1.4599 0.00055943 383.1892912428435 39.15 0.37576 34.699 34.538 34.914 -4.4509 61 23 3 0 0 0 0.54444 1 23281 23281 2.7352 0.99292 1 42875000 + 61864 27490 41347 42272 71987 71987 -0.021603291878591335 SWSMRSIF 8 Unmodified _SWSMRSIF_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2472839355469 2 507.247295 1012.48004 0.27713 0.00014057 -0.2201 -0.00011165 0.057026 2.8926E-05 507.2472787456678 77.234 0.42916 77.284 77.057 77.486 0.05011 55 17 4 0 0 0 0.71527 1 42562 42562 15.847 0 1 14614000 + 61865 17354 41348 42273 71988 71988 -0.025704416344069614 SWSPMDSSWPD 11 Unmodified _SWSPMDSSWPD_ 0 0 0 ENST00000451997.5_1_22:38061874-38062153:+|nuORF ENST00000451997.5_1_22:38061874-38062153:+|nuORF ENST00000451997.5_1_22:38061874-38062153:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 647.7525634765625 2 647.755878 1293.4972 NaN NaN NaN NaN NaN NaN NaN 92.82 1 86.644 86.144 87.144 -6.1757 0 0 0 0.86932 1 61394 61394 8.7454 1.6437 1 61866 13533 41349 42274 71989 71989 -0.1378061060993332 SWSTLSATL 9 Unmodified _SWSTLSATL_ 0 0 0 REV__ENST00000512333.1_1_4:77909015-77926783:+|nuORF REV__ENST00000512333.1_1_4:77909015-77926783:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7486877441406 2 483.250557 964.486562 0.73804 0.00035666 -1.92 -0.00092783 -1.1819 -0.00057117 483.2504013051873 55.741 0.72057 49.82 49.474 50.195 -5.9211 82 42 3 0 0 0 0.14602 1 35350 35350 28.487 3.813 1 127190000 + 61867 28025 41350 42275 71990 71990 0.002897747979545784 SWTDFSRLH 9 Unmodified _SWTDFSRLH_ 0 0 0 nc|ENSG00000120458|Q6P1R3-2|MSANTD2;nc|ENSG00000120458|Q6P1R3-3|MSANTD2;ENSG00000120458|ENST00000374979|MSANTD2 nc|ENSG00000120458|Q6P1R3-2|MSANTD2 nc|ENSG00000120458|Q6P1R3-2|MSANTD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.2174987792969 3 383.520962 1147.54106 0.69118 0.00026508 0.085993 3.298E-05 0.77718 0.00029806 383.5213881575512 24.558 0.33866 21.675 21.478 21.817 -2.8831 36 18 3 0 0 0 0.21493 1 13454 13454 4.897 0.18109 1 4967600 61868 3518 41351 42276 71991 71991 -0.026812133306066244 SWVAAVGA 8 Unmodified _SWVAAVGA_ 0 0 0 ENST00000414239.5_1_X:55744191-55748632:+|nuORF ENST00000414239.5_1_X:55744191-55748632:+|nuORF ENST00000414239.5_1_X:55744191-55748632:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.7038879394531 2 380.703046 759.391539 1.6537 0.00062955 -0.21672 -8.2506E-05 1.4369 0.00054705 380.7028041718452 98.481 0.35103 92.305 92.027 92.378 -6.1757 35 23 2 0 0 0 0.80143 1 65307 65307 5.7604 0 1 13301000 61869 13007 41352 42277 71992 71992 0.0022188611742421926 SWVSAEHLW 9 Unmodified _SWVSAEHLW_ 0 0 0 ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA ENSG00000155719|ENST00000646100|OTOA ENSG00000155719|ENST00000646100|OTOA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7684326171875 2 557.769448 1113.52434 -0.032257 -1.7992E-05 -0.51519 -0.00028736 -0.54744 -0.00030535 557.7691868379264 53.648 0.36712 53.584 53.499 53.866 -0.063423 56 24 3 0 0 0 0.012148 2 29091 29091;29204 74.423 37.917 1 25006000 61870 6404 41353 42278 71993;71994 71993 -0.027877142165834812 SWVSAEHLW 9 Unmodified _SWVSAEHLW_ 0 0 0 ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA ENSG00000155719|ENST00000646100|OTOA ENSG00000155719|ENST00000646100|OTOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7706909179688 2 557.769448 1113.52434 1.061 0.00059182 2.9145 0.0016256 3.9756 0.0022175 557.7715016830331 63.413 0.34374 57.237 57.143 57.487 -6.1757 30 19 3 0 0 0 0.031062 1 41113 41113 54.774 6.4277 1 8800800 61871 6404 41353 42278 71995 71995 -0.027877142165834812 SWVSILEI 8 Unmodified _SWVSILEI_ 0 0 0 ENST00000257290.9_1_4:55162752-55162818:+|nuORF ENST00000257290.9_1_4:55162752-55162818:+|nuORF ENST00000257290.9_1_4:55162752-55162818:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7662658691406 2 473.765843 945.517133 0.6035 0.00028592 -1.2786 -0.00060576 -0.67511 -0.00031984 473.76512786212515 85.486 0.368 84.985 84.7 85.068 -0.5015 42 35 2 0 0 0 0.79669 1 46830 46830 8.5933 0.68312 1 2227700 61872 11189 41354 42279 71996 71996 0.04219553183008884 SWWRGCCHL 9 Unmodified _SWWRGCCHL_ 0 0 0 ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2501220703125 2 574.249846 1146.48514 NaN NaN NaN NaN NaN NaN NaN 11.1 1 11.1 10.6 11.6 0 0 0 0 0.8622 1 5265 5265 0 0 1 61873 12662 41355 42280 71997 71997 -0.08224461043437259 SWWTRNWWWFS 11 Unmodified _SWWTRNWWWFS_ 0 0 0 ENST00000573520.5_1_16:4521405-4524561:-|nuORF;ENST00000571291.5_1_16:4519639-4524561:-|nuORF;ENST00000283429.10_1_16:4519403-4524606:-|nuORF;ENST00000404295.7_1_16:4519400-4524561:-|nuORF;ENST00000574733.5_1_16:4519403-4524387:-|nuORF ENST00000573520.5_1_16:4521405-4524561:-|nuORF ENST00000573520.5_1_16:4521405-4524561:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 821.3754272460938 2 821.372935 1640.73132 1.3362 0.0010975 1.0748 0.0008828 2.4109 0.0019803 821.3736772324523 98.44 0.21759 92.264 92.148 92.365 -6.1757 47 14 4 0 0 0 0.74244 1 65247 65247 0.26902 0.26902 1 110890000 61874 11425 41356 42281 71998 71998 -0.06341926668414999 SWYEWYRWRRC 11 Unmodified _SWYEWYRWRRC_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.8847045898438 2 845.888426 1689.7623 NaN NaN NaN NaN NaN NaN NaN 97.404 1 97.386 96.886 97.886 -0.018188 0 0 0 0.9435 1 54105 54105 0 0 1 + 61875 25293 41357 42282 71999 71999 -0.054990966258401386 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.248046875 2 515.248015 1028.48148 0.24954 0.00012857 0.34746 0.00017903 0.597 0.0003076 515.2480987215829 77.994 0.45047 77.994 77.771 78.222 0 60 19 4 0 0 0 0.013323 2 43367 43268;43367 71.134 9.7761 1 9677100 61876 3488 41358 42283 72000;72001 72001 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.24853515625 2 515.248015 1028.48148 -0.29803 -0.00015356 0.82989 0.0004276 0.53186 0.00027404 515.2482653202895 78.464 0.41374 77.978 77.799 78.213 -0.48596 53 18 4 0 0 0 0.013323 2 43045 42937;43045 71.134 9.7761 1 9485700 61877 3488 41358 42283 72002;72003 72003 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1029.726196289062 1 1029.48875 1028.48148 -0.34557 -0.00035576 0.67757 0.00069755 0.332 0.00034179 1029.4892957807117 78.478 0.25131 77.992 77.888 78.139 -0.48595 18 11 2 0 0 0 0.070838 1 42957 42957 39.957 13.074 1 987260 61878 3488 41358 42283 72004 72004 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2496948242188 2 515.248015 1028.48148 1.1392 0.00058699 0.22437 0.00011561 1.3636 0.0007026 515.2480451575117 86.349 0.60333 80.173 79.87 80.473 -6.1757 81 32 3 0 0 0 0.013323 3 56802 56802;56937;57062 71.134 9.7761 1 60471000 61879 3488 41358 42283 72005;72006;72007 72005 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1029.48875 1028.48148 -0.32775 -0.00033742 0.64853 0.00066765 0.32077 0.00033023 1029.489515693 77.967 0.33921 77.967 77.833 78.172 0 -0.012411 -8.0325E-06 NaN 39.957 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1035800 61880 3488 41358 42283 -0.03162529064661612 SYADNILSF 9 Unmodified _SYADNILSF_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 515.248015 1028.48148 0.41945 0.00021612 -0.41735 -0.00021504 0.0020973 1.0806E-06 515.2478745632969 78.008 0.21635 78.061 77.94 78.156 0.052452 0.049643 -0.00094809 NaN 71.134 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1081200 61881 3488 41358 42283 -0.03162529064661612 SYADQMFL 8 Unmodified _SYADQMFL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MSMS AL20221201_MKP_PDAC_01 4 487.7178344726562 2 487.718036 973.421518 NaN NaN NaN NaN NaN NaN NaN 77.217 1 71.041 70.541 71.541 -6.1757 0 0 0 0.7268 1 50504 50504 26.884 8.7487 1 61882 1899 41359 42284 72008 72008 -0.06625542999552181 SYADQMFLL 9 Unmodified _SYADQMFLL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2600708007812 2 544.260068 1086.50558 0.2109 0.00011479 -0.21433 -0.00011665 -0.0034308 -1.8673E-06 544.2600611705316 89.898 0.43443 89.898 89.68 90.114 0 108 31 4 0 0 0 0.031062 3 49753 49656;49753;49855 54.774 39.935 1 13403000 61883 1899 41360 42285 72009;72010;72011 72010 -0.034210119026511165 SYADQMFLL 9 Unmodified _SYADQMFLL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2600708007812 2 544.260068 1086.50558 0.21067 0.00011466 -0.65967 -0.00035903 -0.44901 -0.00024438 544.2597933802651 90.417 0.56266 89.922 89.646 90.208 -0.49457 104 25 5 0 0 0 0.015445 3 49512 49322;49414;49512 68.081 49.946 1 65301000 61884 1899 41360 42285 72012;72013;72014 72014 -0.034210119026511165 SYADQMFLL 9 Unmodified _SYADQMFLL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.26025390625 2 544.260068 1086.50558 0.41344 0.00022502 0.20489 0.00011151 0.61833 0.00033653 544.2600928481296 89.886 0.3267 89.928 89.723 90.05 0.042175 25 11 3 0 0 0 0.024882 1 49955 49955 58.679 35.53 1 9183000 61885 1899 41360 42285 72015 72015 -0.034210119026511165 SYADQMFLL 9 Unmodified _SYADQMFLL_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2604370117188 2 544.260068 1086.50558 0.8442 0.00045946 -0.24948 -0.00013578 0.59471 0.00032368 544.2599995401577 99.49 0.34772 93.315 93.113 93.46 -6.1757 102 22 6 0 0 0 0.008678 2 66135 66135;66310 88.904 67.157 1 2491500000 61886 1899 41360 42285 72016;72017 72016 -0.034210119026511165 SYADQMFLL 9 Oxidation (M) _SYADQM(Oxidation (M))FLL_ SYADQM(1)FLL SYADQM(68)FLL 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2570190429688 2 552.257525 1102.5005 0.24751 0.00013669 -0.078188 -4.318E-05 0.16932 9.3508E-05 552.2575457465242 73.134 0.62341 73.176 73.009 73.633 0.041725 96 28 5 0 0 0 0.015445 3 40241 40241;40341;40445 68.081 35.775 1 23652000 61887 1899 41360 42286 72018;72019;72020 72018 317 -0.04665315765282685 SYADQMFLL 9 Oxidation (M) _SYADQM(Oxidation (M))FLL_ SYADQM(1)FLL SYADQM(68)FLL 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2575073242188 2 552.257525 1102.5005 0.817 0.00045119 -0.59738 -0.00032991 0.21962 0.00012129 552.2573059483157 80.881 1.3611 74.705 74.296 75.657 -6.1757 254 76 5 0 0 0 0.015445 5 53217 52854;52973;53095;53217;53348 68.081 35.775 1 733990000 61888 1899 41360 42286 72021;72022;72023;72024;72025 72024 317 -0.04665315765282685 SYAELGTTI 9 Unmodified _SYAELGTTI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.477783203125 1 954.477854 953.470577 0.11914 0.00011372 -0.37791 -0.00036071 -0.25877 -0.00024699 954.4773644492763 53.676 0.37147 53.676 53.486 53.858 0 38 17 3 0 0 0 0.0082281 3 29708 29708;29803;29815 92.822 50.728 1 17356000 61889 6085 41361 42287 72026;72027;72028 72026 -0.00801931438934389 SYAELGTTI 9 Unmodified _SYAELGTTI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7425842285156 2 477.742565 953.470577 0.55651 0.00026587 -0.70483 -0.00033673 -0.14832 -7.0856E-05 477.7422753102364 53.664 0.40001 53.664 53.439 53.839 0 43 18 3 0 0 0 0.016184 2 29710 29710;29818 67.344 37.119 1 16902000 61890 6085 41361 42287 72029;72030 72029 -0.00801931438934389 SYAELGTTI 9 Unmodified _SYAELGTTI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.4782104492188 1 954.477854 953.470577 0.78967 0.00075372 0.80747 0.00077071 1.5971 0.0015244 954.4789256152985 61.791 0.39714 55.615 55.384 55.782 -6.1757 33 20 2 0 0 0 0.0041763 2 39736 39736;39869 120.45 59.093 1 29902000 61891 6085 41361 42287 72031;72032 72031 -0.00801931438934389 SYAELGTTI 9 Unmodified _SYAELGTTI_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7431335449219 2 477.742565 953.470577 0.95632 0.00045688 0.197 9.4117E-05 1.1533 0.00055099 477.7429725725185 61.787 0.41947 55.611 55.404 55.823 -6.1757 33 21 3 0 0 0 0.042911 2 39886 39754;39886 48.346 23.672 1 51881000 61892 6085 41361 42287 72033;72034 72034 -0.00801931438934389 SYAELIMKL 9 Oxidation (M) _SYAELIM(Oxidation (M))KL_ SYAELIM(1)KL SYAELIM(46)KL 0 0 1 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2908935546875 2 542.291368 1082.56818 0.0321 1.7407E-05 0.79803 0.00043276 0.83013 0.00045017 542.2914371927667 65.33 0.3168 64.845 64.684 65 -0.48428 50 14 5 0 0 0 0.047788 1 35704 35704 45.7 26.443 1 7528200 61893 6171 41362 42288 72035 72035 1105 0.030201341655583747 SYAELIMKL 9 Oxidation (M) _SYAELIM(Oxidation (M))KL_ 0 0 1 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.291368 1082.56818 0.63906 0.00034656 -0.20487 -0.0001111 0.43419 0.00023546 542.2912961058026 64.835 0.21813 64.835 64.677 64.895 7.6294E-06 -0.008337 -0.00070832 NaN 45.7 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2243000 61894 6171 41362 42288 1105 0.030201341655583747 SYAELIMKL 9 Unmodified _SYAELIMKL_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF;ENST00000590884.5_1_18:43437816-43458370:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.29541015625 2 534.293911 1066.57327 1.0094 0.00053933 1.5698 0.00083872 2.5792 0.001378 534.2945694727279 95.143 0.65294 88.967 88.527 89.18 -6.1757 96 36 3 0 0 0 0.023481 3 62921 62796;62921;63039 60.074 36.053 1 43296000 61895 6171 41362 42289 72036;72037;72038 72037 0.042644380281672056 SYAETPLQL 9 Unmodified _SYAETPLQL_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2632751464844 2 511.263665 1020.51278 0.31498 0.00016104 -0.87904 -0.00044942 -0.56406 -0.00028839 511.26318980415294 63.46 0.44102 63.46 63.244 63.685 0 68 22 4 0 0 0 0.0082485 2 35428 35330;35428 96.285 37.444 1 27013000 61896 7423 41363 42290 72039;72040 72040 0.003340439694284214 SYAETPLQL 9 Unmodified _SYAETPLQL_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.262451171875 2 511.263665 1020.51278 0.36586 0.00018705 -1.0206 -0.00052178 -0.65471 -0.00033473 511.2628334686609 63.967 0.11319 63.482 63.458 63.572 -0.48512 10 5 2 0 0 0 0.06187 1 34916 34916 42.095 20.348 1 1729100 61897 7423 41363 42290 72041 72041 0.003340439694284214 SYAETPLQL 9 Unmodified _SYAETPLQL_ 0 0 0 nc|ENSG00000166016|Q8N961-2|ABTB2;ENSG00000166016|ENST00000435224|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 nc|ENSG00000166016|Q8N961-2|ABTB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2636108398438 2 511.263665 1020.51278 0.84405 0.00043153 -0.60786 -0.00031078 0.23619 0.00012075 511.2631560452354 70.67 0.54396 64.495 64.262 64.806 -6.1757 38 28 2 0 0 0 0.0082485 2 46072 46072;46203 96.285 44.016 1 27942000 61898 7423 41363 42290 72042;72043 72042 0.003340439694284214 SYAFLREAL 9 Unmodified _SYAFLREAL_ 0 0 0 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 ENSG00000160959|ENST00000292524|LRRC14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2881469726562 2 535.287474 1068.5604 NaN NaN NaN NaN NaN NaN NaN 64.137 1 63.652 63.152 64.152 -0.48512 0 0 0 0.39118 1 34992 34992 20.415 6.5085 1 61899 6773 41364 42291 72044 72044 0.028857429602794582 SYAGAALVL 9 Unmodified _SYAGAALVL_ 0 0 0 REV__nc|ENSG00000148835|Q15542-2|TAF5 REV__nc|ENSG00000148835|Q15542-2|TAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.485107421875 1 864.482545 863.475269 -0.27763 -0.00024001 0.33379 0.00028856 0.05616 4.855E-05 864.4829579095586 71.328 0.29961 71.328 71.142 71.442 0 24 15 2 0 0 0 0.55775 1 39668 39668 3.9444 1.0552 1 992100 + 61900 20972 41365 42292 72045 72045 0.03806997494461939 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.28125 2 544.28018 1086.54581 NaN NaN NaN NaN NaN NaN NaN 17.196 1 17.196 16.696 17.696 0 0 0 0 0.67641 1 8452 8452 10.151 2.8613 1 61901 13247 41366 42293 72046 72046 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2802124023438 2 544.28018 1086.54581 -0.78789 -0.00042883 0.82719 0.00045022 0.039303 2.1392E-05 544.2805419382921 17.503 0.10474 17.517 17.466 17.571 0.013865 50 22 3 0 0 0 0.29507 1 8695 8695 17.443 17.443 1 1922400 61902 13247 41366 42293 72047 72047 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.189208984375 3 363.189212 1086.54581 -0.57514 -0.00020889 0.34588 0.00012562 -0.22926 -8.3264E-05 363.18938235155304 17.503 0.12336 17.517 17.455 17.578 0.013865 77 25 4 0 0 0 0.062454 1 8699 8699 39.213 22.647 1 9456700 61903 13247 41366 42293 72048 72048 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2802124023438 2 544.28018 1086.54581 0.064976 3.5365E-05 -1.1046 -0.00060121 -1.0396 -0.00056584 544.2791555669853 17.35 0.1073 17.356 17.307 17.414 0.0050564 10 6 2 0 0 0 0.2546 1 8753 8753 19.362 6.3195 1 613400 61904 13247 41366 42293 72049 72049 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.189208984375 3 363.189212 1086.54581 -0.011279 -4.0964E-06 0.13887 5.0438E-05 0.1276 4.6341E-05 363.18924739338314 17.35 0.13883 17.356 17.291 17.43 0.0050564 26 9 4 0 0 0 0.040683 1 8763 8763 46.022 29.456 1 6145900 61905 13247 41366 42293 72050 72050 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.782958984375 2 544.28018 1086.54581 0.51635 0.00028104 0.60556 0.0003296 1.1219 0.00061063 544.2804877155684 18.111 0.27777 15.489 15.341 15.619 -2.6215 59 22 3 0 0 0 0.053952 2 9473 9473;9582 43.982 30.076 1 11088000 61906 13247 41366 42293 72051;72052 72051 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.1900634765625 3 363.189212 1086.54581 1.2836 0.00046618 0.43968 0.00015969 1.7233 0.00062587 363.18936405200077 18.119 0.35771 15.497 15.314 15.672 -2.6215 88 27 4 0 0 0 0.062454 1 9489 9489 39.213 22.647 1 60421000 61907 13247 41366 42293 72053 72053 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.189212 1086.54581 -0.56829 -0.0002064 0.91287 0.00033154 0.34458 0.00012515 363.1895682268446 17.227 0.21584 17.227 17.118 17.334 0 -0.13944 0.00029433 NaN 46.022 147 51 4 NaN NaN NaN NaN 0 NaN NaN 0 6672300 61908 13247 41366 42293 0.005996708121301708 SYAKSTQRF 9 Unmodified _SYAKSTQRF_ 0 0 0 ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF ENST00000430580.6_1_1:16939836-16939869:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 544.28018 1086.54581 -0.78789 -0.00042883 0.82719 0.00045022 0.039303 2.1392E-05 544.2805419382921 17.503 0.10474 17.517 17.466 17.571 0.013865 0.080596 0.00017012 NaN 19.362 50 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1922400 61909 13247 41366 42293 0.005996708121301708 SYALLVAESW 10 Unmodified _SYALLVAESW_ 0 0 0 ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;nc|ENSG00000182253|O15061-3|SYNM ENSG00000182253|ENST00000336292|SYNM ENSG00000182253|ENST00000336292|SYNM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.791259765625 2 569.792589 1137.57063 NaN NaN NaN NaN NaN NaN NaN 76.269 1 75.789 75.289 76.289 -0.47945 0 0 0 0.97302 1 41749 41749 3.5965 1.2938 1 61910 9036 41367 42294 72054 72054 0.00734305894843601 SYAMQEPF 8 Unmodified _SYAMQEPF_ 0 0 0 REV__nc|nan|Q9HD87|C6orf50 REV__nc|nan|Q9HD87|C6orf50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2116394042969 2 486.710211 971.405868 0.83117 0.00040454 -0.9994 -0.00048642 -0.16822 -8.1876E-05 486.70968605787107 73.677 0.59672 73.201 72.974 73.57 -0.47588 54 27 2 0 0 0 0.6895 1 40362 40362 18.135 1.1927 1 3215800 + 61911 30053 41368 42295 72055 72055 -0.08097829516600541 SYAMQEPF 8 Unmodified _SYAMQEPF_ 0 0 0 REV__nc|nan|Q9HD87|C6orf50 REV__nc|nan|Q9HD87|C6orf50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.4121704101562 1 972.413145 971.405868 0.60032 0.00058376 -1.0084 -0.00098062 -0.40812 -0.00039686 972.4122299715636 73.818 0.48567 73.342 73.042 73.527 -0.47588 34 22 2 0 0 0 0.75262 1 40370 40370 12.532 0.89125 1 1512500 + 61912 30053 41368 42295 72056 72056 -0.08097829516600541 SYANVQDGF 9 Unmodified _SYANVQDGF_ 0 0 0 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7217407226562 2 500.722164 999.429775 0.19392 9.7101E-05 -0.38397 -0.00019226 -0.19004 -9.5159E-05 500.7219629217324 43.746 0.38937 43.746 43.507 43.896 0 48 20 3 0 0 0 0.024882 2 23855 23745;23855 58.679 30.192 1 141030000 61913 6212 41369 42296 72057;72058 72058 -0.06996272758567557 SYANVQDGF 9 Unmodified _SYANVQDGF_ 0 0 0 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7227172851562 2 500.722164 999.429775 1.1597 0.0005807 -0.10516 -5.2654E-05 1.0546 0.00052805 500.72205631350846 50.939 0.54578 45.29 45.026 45.572 -5.649 101 33 4 0 0 0 0.024882 2 32012 31881;32012 58.679 31.795 1 421150000 61914 6212 41369 42296 72059;72060 72060 -0.06996272758567557 SYANVQDGF 9 Unmodified _SYANVQDGF_ 0 0 0 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1000.439819335938 1 1000.43705 999.429775 0.88822 0.00088861 0.3549 0.00035506 1.2431 0.0012437 1000.43723736694 50.954 0.40839 45.305 45.103 45.511 -5.649 56 24 3 0 0 0 3.7274E-10 1 32160 32160 168.54 118.6 1 106470000 61915 6212 41369 42296 72061 72061 -0.06996272758567557 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8009033203125 2 573.800749 1145.58694 0.11952 6.8583E-05 0.39007 0.00022382 0.5096 0.00029241 573.8010010828382 72.681 0.41367 72.722 72.487 72.901 0.041733 65 19 5 0 0 0 0.0095811 2 40043 39939;40043 81.613 54.729 1 39574000 61916 1752 41370 42297 72062;72063 72063 0.01997431851600595 SYANYFIRL 9 Unmodified _SYANYFIRL_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.801513671875 2 573.800749 1145.58694 1.2297 0.00070559 0.041087 2.3576E-05 1.2708 0.00072917 573.8006730235188 88.437 0.71337 82.261 81.923 82.636 -6.1757 94 39 3 0 0 0 0.0044708 3 58471 58215;58343;58471 118.89 88.469 1 43520000 61917 1752 41370 42297 72064;72065;72066 72066 0.01997431851600595 SYAPPTDSF 9 Unmodified _SYAPPTDSF_ 0 0 0 nc|ENSG00000118515|O00141|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1 nc|ENSG00000118515|O00141|SGK1 nc|ENSG00000118515|O00141|SGK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7191772460938 2 492.71909 983.423627 0.79053 0.00038951 -0.1432 -7.0558E-05 0.64733 0.00031895 492.7187435036829 46.155 0.46941 46.155 45.9 46.369 0 45 22 3 0 0 0 0.008678 1 25132 25132 88.904 34.13 1 8746700 61918 16151 41371 42298 72067 72067 -0.06874790990093516 SYAPPTDSF 9 Unmodified _SYAPPTDSF_ 0 0 0 nc|ENSG00000118515|O00141|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;nc|ENSG00000118515|O00141-4|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141-5|SGK1;ENSG00000118515|ENST00000367858|SGK1 nc|ENSG00000118515|O00141|SGK1 nc|ENSG00000118515|O00141|SGK1 MSMS AL20221201_MKP_PDAC_01 4 492.7188720703125 2 492.71909 983.423627 NaN NaN NaN NaN NaN NaN NaN 53.671 1 47.867 47.367 48.367 -5.8042 0 0 0 0.025979 1 33953 33953 71.134 31.176 1 61919 16151 41371 42298 72068 72068 -0.06874790990093516 SYAQGFMLL 9 Oxidation (M) _SYAQGFM(Oxidation (M))LL_ SYAQGFM(1)LL SYAQGFM(52)LL 0 0 1 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2543334960938 2 523.254785 1044.49502 -0.90146 -0.00047169 -0.2107 -0.00011025 -1.1122 -0.00058194 523.2545472586023 77.973 0.53769 77.49 77.244 77.782 -0.4826 72 37 2 0 0 0 0.03568 2 42780 42608;42780 52.268 19.963 1 18354000 61920 5436 41372 42299 72069;72070 72070 1001 -0.02544994557069913 SYAQGFMLL 9 Oxidation (M) _SYAQGFM(Oxidation (M))LL_ SYAQGFM(1)LL SYAQGFM(89)LL 0 0 1 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2554321289062 2 523.254785 1044.49502 0.077822 4.0721E-05 0.39128 0.00020474 0.4691 0.00024546 523.2549130683637 77.469 0.39998 77.519 77.321 77.721 0.05011 42 16 3 0 0 0 0.008678 2 42715 42715;42816 88.904 31.432 1 7607100 61921 5436 41372 42299 72071;72072 72071 1001 -0.02544994557069913 SYAQGFMLL 9 Oxidation (M) _SYAQGFM(Oxidation (M))LL_ SYAQGFM(1)LL SYAQGFM(75)LL 0 0 1 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2533569335938 2 523.254785 1044.49502 0.17406 9.1076E-05 -0.45206 -0.00023654 -0.278 -0.00014547 523.2544714445945 85.031 0.61996 78.856 78.548 79.168 -6.1757 91 37 3 0 0 0 0.011968 2 55815 55815;55949 74.929 26.583 1 51628000 61922 5436 41372 42299 72073;72074 72073 1001 -0.02544994557069913 SYAQGFMLL 9 Unmodified _SYAQGFMLL_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.25732421875 2 515.257328 1028.5001 0.88095 0.00045392 -0.66812 -0.00034425 0.21284 0.00010967 515.2571371955454 99.261 0.30653 93.085 92.894 93.201 -6.1757 35 18 3 0 0 0 0.018301 1 65981 65981 65.235 29.108 1 55307000 61923 5436 41372 42300 72075 72075 -0.013006906944383445 SYAQHIASI 9 Unmodified _SYAQHIASI_ 0 0 0 ENSG00000109919|ENST00000302503|MTCH2;ENST00000539759.5_1_11:47639025-47663996:-|nuORF ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2576599121094 2 495.256174 988.497795 0.14564 7.2127E-05 0.8896 0.00044058 1.0352 0.00051271 495.25653036797024 37.437 0.25283 37.437 37.296 37.549 0 29 13 3 0 0 0 0.01958 1 19898 19898 63.961 18.261 1 13131000 61924 2682 41373 42301 72076 72076 0.003085968920800042 SYAQHIASI 9 Unmodified _SYAQHIASI_ 0 0 0 ENSG00000109919|ENST00000302503|MTCH2;ENST00000539759.5_1_11:47639025-47663996:-|nuORF ENSG00000109919|ENST00000302503|MTCH2 ENSG00000109919|ENST00000302503|MTCH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2560424804688 2 495.256174 988.497795 1.0062 0.00049833 0.051053 2.5284E-05 1.0573 0.00052362 495.2561295340255 42.502 0.57843 37.817 37.575 38.153 -4.6846 55 37 2 0 0 0 0.015688 2 25619 25619;25746 67.838 29.663 1 23790000 61925 2682 41373 42301 72077;72078 72077 0.003085968920800042 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8575439453125 3 385.857574 1154.55089 0.4769 0.00018401 -0.13289 -5.1277E-05 0.344 0.00013274 385.85748426343406 53.773 0.2751 53.321 53.167 53.442 -0.45173 31 13 3 0 0 0 0.24903 1 29091 29091 19.626 7.4512 1 7675700 61926 8879 41374 42302 72079 72079 -0.020200253252596667 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2821044921875 2 578.282723 1154.55089 0.53437 0.00030902 0.42114 0.00024354 0.95551 0.00055256 578.2828731521158 53.749 0.2537 53.297 53.148 53.402 -0.45173 19 12 2 0 0 0 0.065007 1 29120 29120 37.075 13.054 1 1691100 61927 8879 41374 42302 72080 72080 -0.020200253252596667 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8573913574219 3 385.857574 1154.55089 -0.18801 -7.2544E-05 0.19588 7.5582E-05 0.0078716 3.0373E-06 385.8576671650417 53.43 0.28536 53.366 53.177 53.463 -0.063423 35 13 4 0 0 0 0.20389 1 28941 28941 22.775 11.257 1 14381000 61928 8879 41374 42302 72081 72081 -0.020200253252596667 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2833251953125 2 578.282723 1154.55089 0.16195 9.3655E-05 0.35562 0.00020565 0.51758 0.0002993 578.2830608078143 53.428 0.24338 53.365 53.219 53.463 -0.063423 24 11 3 0 0 0 0.026582 1 28967 28967 61.09 33.461 1 5480500 61929 8879 41374 42302 72082 72082 -0.020200253252596667 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8580932617188 3 385.857574 1154.55089 1.5243 0.00058816 0.014189 5.475E-06 1.5385 0.00059364 385.85764841602776 86.952 0.62112 80.776 80.509 81.13 -6.1757 71 33 3 0 0 0 0.2862 2 57249 57249;57364 17.863 6.9642 1 25018000 61930 8879 41374 42302 72083;72084 72083 -0.020200253252596667 SYARHFLDF 9 Unmodified _SYARHFLDF_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MSMS AL20221201_MKP_PDAC_01 4 578.2826538085938 2 578.282723 1154.55089 NaN NaN NaN NaN NaN NaN NaN 86.893 1 80.717 80.217 81.217 -6.1757 0 0 0 0.046868 1 57287 57287 71.708 44.824 1 61931 8879 41374 42302 72085 72085 -0.020200253252596667 SYARHFQPF 9 Unmodified _SYARHFQPF_ 0 0 0 nc|ENSG00000145916|Q96G75-2|RMND5B;ENST00000515360.5_1_5:177569546-177575030:+|nuORF;ENSG00000145916|ENST00000313386|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B nc|ENSG00000145916|Q96G75-2|RMND5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.85791015625 3 384.857686 1151.55123 NaN NaN NaN NaN NaN NaN NaN 36.703 1 36.725 36.225 37.225 0.021545 0 0 0 0.61214 1 19456 19456 8.4443 5.8131 1 61932 5740 41375 42303 72086 72086 -0.0184860560539164 SYARSSNLI 9 Unmodified _SYARSSNLI_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7665100097656 2 505.766906 1009.51926 NaN NaN NaN NaN NaN NaN NaN 32.82 1 32.82 32.32 33.32 0 0 0 0 0.56093 1 17173 17173 13.906 0.39817 1 61933 9430 41376 42304 72087 72087 0.014879819208090339 SYARSSNLI 9 Unmodified _SYARSSNLI_ 0 0 0 ENST00000575471.2_1_16:31925765-31927799:+|nuORF;ENSG00000185947|ENST00000300870|ZNF267 ENST00000575471.2_1_16:31925765-31927799:+|nuORF ENST00000575471.2_1_16:31925765-31927799:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7665710449219 2 505.766906 1009.51926 0.92083 0.00046572 -0.68809 -0.00034801 0.23274 0.00011771 505.7656970770749 36.87 0.1077 32.586 32.524 32.632 -4.2835 10 6 2 0 0 0 0.062454 1 21575 21575 41.956 17.282 1 2821000 61934 9430 41376 42304 72088 72088 0.014879819208090339 SYASHTVGF 9 Unmodified _SYASHTVGF_ 0 0 0 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7278137207031 2 484.727249 967.439946 -0.34498 -0.00016722 0.456 0.00022103 0.11102 5.3816E-05 484.7275580219506 34.984 0.1718 34.984 34.9 35.072 0 20 8 3 0 0 0 0.06187 1 18477 18477 42.095 13.608 1 3266200 61935 2545 41377 42305 72089 72089 -0.04507665033327157 SYASLQQNKW 10 Unmodified _SYASLQQNKW_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.8043823242188 2 612.80402 1223.59349 0.25448 0.00015595 0.9869 0.00060478 1.2414 0.00076072 612.8042648609253 39.959 0.23402 39.662 39.548 39.782 -0.29716 23 10 3 0 0 0 0.015874 1 21082 21082 103.35 74.272 1 3156500 61936 2180 41378 42306 72090 72090 -0.009366749876789981 SYASLQQNKW 10 Unmodified _SYASLQQNKW_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3057861328125 2 612.80402 1223.59349 0.55475 0.00033995 1.9664 0.001205 2.5212 0.001545 612.8055057563417 44.423 0.2852 39.571 39.461 39.746 -4.852 47 19 3 0 0 0 0.0096273 2 27247 27111;27247 114.65 82.939 1 36686000 61937 2180 41378 42306 72091;72092 72092 -0.009366749876789981 SYASLQQNKW 10 Unmodified _SYASLQQNKW_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 612.80402 1223.59349 0.57281 0.00035102 0.11711 7.1768E-05 0.68993 0.00042279 612.8043375038538 39.567 0.14566 39.579 39.528 39.674 0.011456 -0.025311 -0.0013306 NaN 114.65 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 964990 61938 2180 41378 42306 -0.009366749876789981 SYATLLHVL 9 Unmodified _SYATLLHVL_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7926940917969 2 508.792392 1015.57023 0.48721 0.00024789 0.38413 0.00019544 0.87134 0.00044333 508.79272812018087 74.615 0.39508 74.661 74.481 74.876 0.045959 47 17 4 0 0 0 0.03327 2 41087 41087;41189 53.576 31.829 1 23438000 61939 9202 41379 42307 72093;72094 72093 0.06306930965638458 SYATLLHVL 9 Unmodified _SYATLLHVL_ 0 0 0 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 ENSG00000183840|ENST00000329321|GPR39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7931213378906 2 508.792392 1015.57023 1.0935 0.00055635 0.63021 0.00032065 1.7237 0.00087699 508.7927244599156 94.326 0.9747 88.15 87.862 88.837 -6.1757 146 56 4 0 0 0 0.03327 4 62459 62334;62459;62585;62705 53.576 31.829 1 118340000 61940 9202 41379 42307 72095;72096;72097;72098 72096 0.06306930965638458 SYATVYLI 8 Unmodified _SYATVYLI_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 nc|ENSG00000136240|P33947-2|KDELR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 929.4949951171875 1 929.497861 928.490584 0.18899 0.00017567 0.55535 0.0005162 0.74434 0.00069187 929.4974950902174 76.233 0.26455 75.754 75.594 75.858 -0.47945 16 10 2 0 0 0 0.61462 1 41719 41719 24.674 11.166 1 482150 61941 4803;16212 41380 42308 72099 72099 0.02347864291652968 SYAVHITSF 9 Unmodified _SYAVHITSF_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7589721679688 2 512.758549 1023.50255 0.30631 0.00015706 0.8664 0.00044426 1.1727 0.00060132 512.7588510211227 53.4 0.26473 52.948 52.823 53.087 -0.45173 32 12 3 0 0 0 0.12424 1 28894 28894 30.637 15.798 1 8041600 61942 9806 41381 42309 72100 72100 -0.008265189651410765 SYAVHITSF 9 Unmodified _SYAVHITSF_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7587280273438 2 512.758549 1023.50255 1.2031 0.0006169 -1.2079 -0.00061934 -0.0047419 -2.4314E-06 512.758091608899 59.093 0.41593 53.019 52.734 53.15 -6.0745 39 22 2 0 0 0 0.03568 1 37877 37877 52.268 16.224 1 23171000 61943 9806 41381 42309 72101 72101 -0.008265189651410765 SYAVHITSF 9 Unmodified _SYAVHITSF_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.758549 1023.50255 0.5397 0.00027674 -0.99298 -0.00050916 -0.45328 -0.00023242 512.7583181395902 53.061 0.10425 52.998 52.919 53.024 -0.063423 0.0092914 -0.001259 NaN 52.268 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 663180 61944 9806 41381 42309 -0.008265189651410765 SYAVLVQF 8 Unmodified _SYAVLVQF_ 0 0 0 REV__nc|ENSG00000167139|Q8IYX1-2|TBC1D21 REV__nc|ENSG00000167139|Q8IYX1-2|TBC1D21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 926.4969482421875 1 926.498195 925.490919 0.39595 0.00036685 -1.4204 -0.001316 -1.0244 -0.00094911 926.4971114563309 80.387 0.31421 80.445 80.293 80.607 0.057587 26 14 2 0 0 0 0.19792 1 44499 44499 70.716 0 1 27818000 + 61945 22185 41382 42310 72102 72102 0.025192840115323634 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7673950195312 2 538.768583 1075.52261 NaN NaN NaN NaN NaN NaN NaN 93.502 1 93.502 93.002 94.002 0 0 0 0 0.6032 1 51693 51693 12.532 4.6214 1 61946 6389 41383 42311 72103 72103 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1076.791137695312 1 1076.52989 1075.52261 0.26959 0.00029022 0.5404 0.00058176 0.80999 0.00087198 1076.5293876506344 94.107 0.35876 93.687 93.479 93.838 -0.42044 65 19 4 0 0 0 0.010877 1 51353 51353 77.984 33.577 1 6148400 61947 6389 41383 42311 72104 72104 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7673950195312 2 538.768583 1075.52261 NaN NaN NaN NaN NaN NaN NaN 93.941 1 93.52 93.02 94.02 -0.42044 0 0 0 0.096036 1 51326 51326 44.407 26.272 1 61948 6389 41383 42311 72105 72105 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.768798828125 2 538.768583 1075.52261 NaN NaN NaN NaN NaN NaN NaN 94.122 1 93.701 93.201 94.201 -0.42044 0 0 0 0.096036 1 51425 51425 44.407 12.29 1 61949 6389 41383 42311 72106 72106 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7687377929688 2 538.768583 1075.52261 NaN NaN NaN NaN NaN NaN NaN 94.315 1 93.895 93.395 94.395 -0.42044 0 0 0 0.82396 1 51531 51531 4.756 1.8668 1 61950 6389 41383 42311 72107 72107 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7693481445312 2 538.768583 1075.52261 1.8625 0.0010035 0.03888 2.0947E-05 1.9014 0.0010244 538.7683395999652 93.576 0.36807 93.599 93.426 93.794 0.022987 35 14 3 0 0 0 0.052168 1 52022 52022 44.407 12.29 1 3288500 61951 6389 41383 42311 72108 72108 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7691650390625 2 538.768583 1075.52261 0.92797 0.00049996 0.71507 0.00038526 1.643 0.00088522 538.7692922312561 99.996 0.17172 93.82 93.727 93.898 -6.1757 28 11 3 0 0 0 0.14602 1 66805 66805 28.487 3.813 1 167080000 61952 6389 41383 42311 72109 72109 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1076.52989 1075.52261 -0.42411 -0.00045656 1.8036 0.0019416 1.3795 0.001485 1076.531314359358 93.589 0.20797 93.589 93.473 93.681 0 -0.10809 0.0014699 NaN 77.984 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1058200 61953 6389 41383 42311 -0.012127680251978745 SYAYILEAF 9 Unmodified _SYAYILEAF_ 0 0 0 ENSG00000155465|ENST00000674313|SLC7A7;ENSG00000103064|ENST00000219343|SLC7A6 ENSG00000155465|ENST00000674313|SLC7A7 ENSG00000155465|ENST00000674313|SLC7A7 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1076.52989 1075.52261 0.86543 0.00093166 -1.0449 -0.0011249 -0.17952 -0.00019326 1076.5288147776585 99.992 0.14326 93.816 93.755 93.898 -6.1757 0.1188 -0.0015966 NaN 77.984 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 108320000 61954 6389 41383 42311 -0.012127680251978745 SYCDCKIFKI 10 2 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))DC(Carbamidomethyl (C))KIFKI_ SYC(1)DC(1)KIFKI SYC(55)DC(55)KIFKI 0 2 0 ENSG00000138780|ENST00000515279|GSTCD;nc|ENSG00000138780|Q8NEC7-3|GSTCD;ENST00000484843.1_1_4:106638770-106744253:+|nuORF ENSG00000138780|ENST00000515279|GSTCD ENSG00000138780|ENST00000515279|GSTCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.2143249511719 3 445.214153 1332.62063 0.72138 0.00032117 0.05178 2.3053E-05 0.77316 0.00034422 445.21420787507645 53.222 0.28109 47.417 47.234 47.515 -5.8042 29 16 3 0 0 0 0.061642 1 33594 33594 55.249 36.105 1 17536000 61955 5106 41384 42312 72110 72110 523;524 -0.032376507631397544 SYCESHHF 8 Unmodified _SYCESHHF_ 0 0 0 REV__ENSG00000196748|ENST00000403376|CLPSL2 REV__ENSG00000196748|ENST00000403376|CLPSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.1964111328125 2 505.195259 1008.37597 0.4614 0.0002331 1.4664 0.0007408 1.9278 0.0009739 505.19569768079054 79.154 0.33122 79.154 78.951 79.282 0 30 14 3 0 0 0 0.80676 1 43929 43929 2.5775 0 1 1125600 + 61956 23867 41385 42313 72111 72111 -0.12788768461928157 SYCHQHSKI 9 Unmodified _SYCHQHSKI_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2572631835938 2 551.758558 1101.50256 0.54392 0.00030011 -1.4518 -0.00080106 -0.90791 -0.00050095 552.2580645481429 89.394 0.87286 88.892 88.418 89.291 -0.50171 50 38 2 0 0 0 0.54444 2 48768 48768;48980 4.756 0 1 604480 + 61957 20101 41386 42314 72112;72113 72112 -0.04412842236797587 SYCPDCALLL 10 2 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))PDC(Carbamidomethyl (C))ALLL_ SYC(1)PDC(1)ALLL SYC(52)PDC(52)ALLL 0 2 0 ENSG00000172432|ENST00000307126|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.275390625 2 606.275392 1210.53623 0.15596 9.4553E-05 -0.64515 -0.00039114 -0.4892 -0.00029659 606.2752056028112 82.107 0.53749 75.931 75.694 76.232 -6.1757 66 29 3 0 0 0 0.074936 2 53971 53840;53971 52.268 34.122 1 37850000 61958 8217 41387 42315 72114;72115 72115 789;790 -0.060616015799041634 SYCRLHMYIQ 10 Unmodified _SYCRLHMYIQ_ 0 0 0 REV__ENSG00000198792|ENST00000361906|TMEM184B REV__ENSG00000198792|ENST00000361906|TMEM184B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.5419006347656 3 438.542492 1312.60565 0.049392 2.166E-05 -1.4229 -0.000624 -1.3735 -0.00060234 438.54232834503944 54.761 0.29614 54.294 54.124 54.42 -0.46664 55 14 5 0 0 0 0.69377 1 29749 29749 1.7423 0.14999 1 26825000 + 61959 24058 41388 42316 72116 72116 -0.03815097840492854 SYCSICCSGET 11 Unmodified _SYCSICCSGET_ 0 0 0 ENSG00000142182|ENST00000628202|DNMT3L;nc|ENSG00000142182|Q9UJW3-2|DNMT3L ENSG00000142182|ENST00000628202|DNMT3L ENSG00000142182|ENST00000628202|DNMT3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8036804199219 3 384.805054 1151.39333 0.3422 0.00013168 -2.8028 -0.0010785 -2.4606 -0.00094685 384.80391801581516 42.399 0.22956 42.399 42.238 42.468 0 16 10 2 0 0 0 0.73114 1 22966 22966 1.3296 0.1363 1 2257200 61960 5396 41389 42317 72117 72117 -0.17630977033468298 SYCYECTARF 10 2 Carbamidomethyl (C) _SYC(Carbamidomethyl (C))YEC(Carbamidomethyl (C))TARF_ SYC(1)YEC(1)TARF SYC(77)YEC(77)TARF 0 2 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.7719116210938 2 678.771005 1355.52746 0.51451 0.00034923 0.18489 0.0001255 0.6994 0.00047473 678.7705366931959 45.376 0.20596 40.421 40.284 40.49 -4.9549 22 14 2 0 0 0 0.018732 1 27786 27786 76.825 29.23 1 7808300 61961 9403 41390 42318 72118 72118 877;878 -0.1360857521640355 SYDAPSDFINF 11 Unmodified _SYDAPSDFINF_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.2803955078125 2 638.280043 1274.54553 0.043142 2.7537E-05 1.0117 0.00064572 1.0548 0.00067326 638.2806392646525 81.101 0.32727 81.101 80.911 81.238 0 31 15 3 0 0 0 0.67037 1 45000 45000 13.042 9.0981 1 639470 61962 1485 41391 42319 72119 72119 -0.08075793698367306 SYDAPSDFINF 11 Unmodified _SYDAPSDFINF_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.78076171875 2 638.280043 1274.54553 0.45662 0.00029145 0.63918 0.00040797 1.0958 0.00069942 638.2805349841361 81.655 0.31918 81.16 80.994 81.313 -0.4952 29 12 3 0 0 0 0.67037 1 44684 44684 13.042 9.0981 1 1497600 61963 1485 41391 42319 72120 72120 -0.08075793698367306 SYDAPSDFINF 11 Unmodified _SYDAPSDFINF_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.2809448242188 2 638.280043 1274.54553 1.0165 0.00064879 0.49837 0.0003181 1.5148 0.00096689 638.280391176508 89.162 0.386 82.986 82.796 83.182 -6.1757 36 21 2 0 0 0 0.12206 2 58799 58799;58950 57.722 40.609 1 10055000 61964 1485 41391 42319 72121;72122 72121 -0.08075793698367306 SYDCGMYVIC 10 Unmodified _SYDCGMYVIC_ 0 0 0 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 ENSG00000166192|ENST00000340912|SENP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8133850097656 3 385.150273 1152.42899 NaN NaN NaN NaN NaN NaN NaN 73.405 1 73.405 72.905 73.905 0 0 0 0 0.99091 1 40867 40867 0.69767 0 1 61965 7449 41392 42320 72123 72123 -0.14112894785785102 SYDCVCVMFAS 11 Unmodified _SYDCVCVMFAS_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7;ENST00000489501.1_1_5:7802261-7826981:+|nuORF;nc|ENSG00000078295|Q08462-2|ADCY2;ENSG00000078295|ENST00000338316|ADCY2 ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.8292236328125 3 408.829311 1223.4661 -0.51043 -0.00020868 0.073496 3.0047E-05 -0.43693 -0.00017863 408.82929037957587 56.049 0.24621 56.049 55.916 56.162 0 24 11 3 0 0 0 0.65108 1 31151 31151 10.315 4.1234 1 3848900 61966 3575 41393 42321 72124 72124 -0.1366922324002644 SYDDFSADF 9 Unmodified _SYDDFSADF_ 0 0 0 ENSG00000118292|ENST00000369099|C1orf54 ENSG00000118292|ENST00000369099|C1orf54 ENSG00000118292|ENST00000369099|C1orf54 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.2538452148438 2 533.703637 1065.39272 0.68216 0.00036407 0.43285 0.00023102 1.115 0.00059509 533.7036620631351 38.259 0.34221 33.89 33.75 34.092 -4.3689 28 20 2 0 0 0 0.16785 1 22542 22542 16.942 11.712 1 14608000 61967 3364 41394 42322 72125 72125 -0.1373598909501652 SYDDTVKL 8 Unmodified _SYDDTVKL_ 0 0 0 ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF ENSG00000144021|ENST00000488633|CIAO1 ENSG00000144021|ENST00000488633|CIAO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7341918945312 2 470.73474 939.454927 0.45629 0.00021479 -0.56421 -0.00026559 -0.10792 -5.0803E-05 470.7341144150198 38.156 0.33741 38.156 37.925 38.263 0 39 17 3 0 0 0 0.36898 1 20315 20315 47.749 19.262 1 18758000 61968 5574 41395 42323 72126 72126 -0.017222179560008044 SYDDTVKL 8 Unmodified _SYDDTVKL_ 0 0 0 ENSG00000144021|ENST00000488633|CIAO1;ENST00000272402.2_1_2:96932116-96934407:+|nuORF ENSG00000144021|ENST00000488633|CIAO1 ENSG00000144021|ENST00000488633|CIAO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7355651855469 2 470.73474 939.454927 0.60377 0.00028421 0.31207 0.0001469 0.91584 0.00043112 470.7349834927282 43.584 0.43297 38.819 38.633 39.066 -4.7648 70 26 3 0 0 0 0.29252 2 26450 26450;26575 56.177 27.69 1 39795000 61969 5574 41395 42323 72127;72128 72127 -0.017222179560008044 SYDEAIANL 9 Unmodified _SYDEAIANL_ 0 0 0 nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1;ENST00000563505.5_1_16:730510-732063:+|nuORF;ENST00000566181.2_1_16:731229-732210:+|nuORF nc|ENSG00000103266|Q9UNE7-2|STUB1;ENST00000566181.2_1_16:731229-732210:+|nuORF nc|ENSG00000103266|Q9UNE7-2|STUB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2391052246094 2 498.237647 994.460741 NaN NaN NaN NaN NaN NaN NaN 55.736 1 55.736 55.236 56.236 0 0 0 0 0.15618 1 30974 30974 36.044 22.536 1 61970 2122;15416 41396 42324 72129 72129 -0.03671119444334181 SYDEAILHL 9 Unmodified _SYDEAILHL_ 0 0 0 nc|ENSG00000112763|Q7KYR7-5|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1 nc|ENSG00000112763|Q7KYR7-5|BTN2A1 nc|ENSG00000112763|Q7KYR7-5|BTN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7694702148438 2 530.769114 1059.52368 0.38054 0.00020198 -2.0544 -0.0010904 -1.6738 -0.00088842 530.7688205127812 63.452 0.22513 63.452 63.295 63.52 0 20 13 2 0 0 0 0.045537 1 35392 35392 46.921 10.877 1 1815900 61971 2918 41397 42325 72130 72130 -0.0037055365628475556 SYDENDIRH 9 Unmodified _SYDENDIRH_ 0 0 0 nc|ENSG00000196115|Q6NVV9-6|ADAM5;nc|ENSG00000196115|Q6NVV9-7|ADAM5;nc|ENSG00000196115|Q6NVV9|ADAM5 nc|ENSG00000196115|Q6NVV9-6|ADAM5 nc|ENSG00000196115|Q6NVV9-6|ADAM5 MSMS AL20221201_MKP_PDAC_01 4 383.8372192382812 3 383.503748 1147.48942 NaN NaN NaN NaN NaN NaN NaN 12.667 1 10.186 9.6855 10.686 -2.482 0 0 0 0.85737 1 6413 6413 0.26902 0 1 61972 16475 41398 42326 72131 72131 -0.07843001815172101 SYDESKVEF 9 Unmodified _SYDESKVEF_ 0 0 0 nc|ENSG00000131584|Q96P50-1|ACAP3;ACAP3|p.L773Gfs*13|1|0.15|ENSG00000131584|chr1:1293866-1293867|-/CGGGTCC|frameshift_variant;ENSG00000131584|ENST00000354700|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF nc|ENSG00000131584|Q96P50-1|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2481079101562 2 552.248212 1102.48187 0.41747 0.00023055 -1.2672 -0.00069978 -0.84968 -0.00046924 552.2477643133581 37.997 0.14203 37.997 37.865 38.007 0 11 6 2 0 0 0 0.2324 1 20247 20247 20.415 3.3016 1 2034000 61973 7 41399 42327 72132 72132 -0.06527154135483215 SYDFTVRF 8 Unmodified _SYDFTVRF_ 0 0 0 ENSG00000112357|ENST00000318471|PEX7 ENSG00000112357|ENST00000318471|PEX7 ENSG00000112357|ENST00000318471|PEX7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7517700195312 2 517.750724 1033.4869 0.3158 0.0001635 0.95924 0.00049665 1.275 0.00066015 517.751244704318 64.999 0.29901 64.514 64.317 64.616 -0.48428 21 13 2 0 0 0 0.48583 1 35436 35436 36.127 23.595 1 1035400 61974 2886 41400 42328 72133 72133 -0.028508054821941187 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7577514648438 2 555.758746 1109.50294 0.53122 0.00029523 -0.33263 -0.00018486 0.19859 0.00011037 555.7584258951919 58.428 0.59395 58.428 58.036 58.63 0 96 23 6 0 0 0 0.012148 2 32456 32456;32562 74.423 40.021 1 216910000 61975 4413 41401 42329 72134;72135 72134 -0.04743144035955993 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2109375 2 555.758746 1109.50294 NaN NaN NaN NaN NaN NaN NaN 58.837 1 58.837 58.337 59.337 0 0 0 0 0.76439 1 32769 32769 7.2892 2.0586 1 61976 4413 41401 42329 72136 72136 -0.04743144035955993 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7584228515625 2 555.758746 1109.50294 NaN NaN NaN NaN NaN NaN NaN 58.857 1 58.857 58.357 59.357 0 0 0 0 0.50124 1 32779 32779 15.847 5.6638 1 61977 4413 41401 42329 72137 72137 -0.04743144035955993 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.75830078125 2 555.758746 1109.50294 0.49612 0.00027572 0.7963 0.00044255 1.2924 0.00071827 555.7590599026225 58.911 0.39243 58.42 58.252 58.644 -0.49079 58 18 4 0 0 0 0.012148 2 31987 31987;32092 74.423 34.465 1 25190000 61978 4413 41401 42329 72138;72139 72138 -0.04743144035955993 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.7593383789062 2 555.758746 1109.50294 0.80359 0.0004466 -1.0734 -0.00059655 -0.2698 -0.00014995 555.7581665860677 58.551 0.19448 58.491 58.373 58.568 -0.060719 17 9 2 0 0 0 0.026094 1 31894 31894 57.471 29.298 1 2965100 61979 4413 41401 42329 72140 72140 -0.04743144035955993 SYDHVELTF 9 Unmodified _SYDHVELTF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF;nc|ENSG00000132471|Q969T9-2|WBP2;ENST00000592802.1_1_17:73847561-73851408:-|nuORF;ENST00000589834.1_1_17:73845679-73851408:-|nuORF;ENST00000590450.5_1_17:73845072-73851378:-|nuORF;ENST00000589241.5_1_17:73844624-73851319:-|nuORF;ENST00000587642.5_1_17:73844624-73847864:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7594604492188 2 555.758746 1109.50294 1.1983 0.00066597 -0.23204 -0.00012896 0.96627 0.00053701 555.7588886230521 64.731 0.6785 58.555 58.262 58.941 -6.1757 92 37 3 0 0 0 0.012148 3 41973 41844;41973;42102 74.423 40.021 1 246910000 61980 4413 41401 42329 72141;72142;72143 72142 -0.04743144035955993 SYDHVIYSL 9 Unmodified _SYDHVIYSL_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2698974609375 2 548.769114 1095.52368 0.39856 0.00021872 -1.4398 -0.00079009 -1.0412 -0.00057138 549.2693937897942 55.428 0.35816 54.95 54.774 55.132 -0.47798 36 16 3 0 0 0 0.042911 1 30072 30072 48.346 14.243 1 2533900 61981 6658 41402 42330 72144 72144 -0.020265536563101705 SYDHVIYSL 9 Unmodified _SYDHVIYSL_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.769114 1095.52368 0.48166 0.00026432 0.90414 0.00049616 1.3858 0.00076049 548.7694706164901 54.907 0.24227 54.907 54.812 55.054 0 -0.021408 0.0010895 NaN 48.346 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2252300 61982 6658 41402 42330 -0.020265536563101705 SYDIGTINSF 10 Unmodified _SYDIGTINSF_ 0 0 0 REV__ENST00000466270.5_1_10:126450870-126477664:-|nuORF REV__ENST00000466270.5_1_10:126450870-126477664:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 558.7659301757812 2 558.764029 1115.5135 NaN NaN NaN NaN NaN NaN NaN 43.229 1 38.465 37.965 38.965 -4.7648 0 0 0 0.68942 1 26234 26234 17.113 4.5813 1 + 61983 24121 41403 42331 72145 72145 -0.03963161381534519 SYDLANRDF 9 Unmodified _SYDLANRDF_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7540893554688 2 550.753995 1099.49344 0.061265 3.3742E-05 -0.58982 -0.00032484 -0.52855 -0.0002911 550.7538169332124 41.867 0.30336 41.867 41.689 41.992 0 42 15 4 0 0 0 0.023481 1 22583 22583 60.074 27.288 1 25761000 61984 1865 41404 42332 72146 72146 -0.052329123214803985 SYDLANRDF 9 Unmodified _SYDLANRDF_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MSMS AL20221201_MKP_PDAC_01 4 550.754150390625 2 550.753995 1099.49344 NaN NaN NaN NaN NaN NaN NaN 47.278 1 42.197 41.697 42.697 -5.0805 0 0 0 0.083082 1 29328 29328 47.749 5.6541 1 61985 1865 41404 42332 72147 72147 -0.052329123214803985 SYDLFVNSF 9 Unmodified _SYDLFVNSF_ 0 0 0 ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000543594.5_1_11:61131784-61132000:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2545776367188 2 546.25584 1090.49713 0.25211 0.00013772 -0.36554 -0.00019968 -0.11343 -6.1961E-05 546.2559409028914 84.759 0.2627 84.759 84.567 84.829 0 17 12 2 0 0 0 0.39863 1 46948 46948 12.532 1.7076 1 369960 61986 6011 41405 42333 72148 72148 -0.044502425476366625 SYDLFVNSF 9 Unmodified _SYDLFVNSF_ 0 0 0 ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000543594.5_1_11:61131784-61132000:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2557373046875 2 546.25584 1090.49713 0.28013 0.00015302 0.24643 0.00013461 0.52656 0.00028764 546.2557948592729 93.47 0.51385 87.294 87.056 87.57 -6.1757 53 34 2 0 0 0 0.042911 2 61876 61740;61876 48.346 30.199 1 16216000 61987 6011 41405 42333 72149;72150 72150 -0.044502425476366625 SYDLFVNSF 9 Unmodified _SYDLFVNSF_ 0 0 0 ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF;ENST00000543594.5_1_11:61131784-61132000:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.25584 1090.49713 0.34115 0.00018636 -2.2078 -0.001206 -1.8666 -0.0010197 546.2545691041389 85.184 0.2666 84.682 84.505 84.772 -0.5015 -0.038156 -0.00080053 NaN 12.532 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4600600 61988 6011 41405 42333 -0.044502425476366625 SYDLYPDIL 9 Unmodified _SYDLYPDIL_ 0 0 0 REV__nc|ENSG00000290584|Q9P1P4|TAAR3P REV__nc|ENSG00000290584|Q9P1P4|TAAR3P MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2752685546875 2 549.771322 1097.52809 1.1097 0.0006101 -2.3546 -0.0012945 -1.2448 -0.00068438 549.7695294813781 71.527 0.38454 65.351 65.189 65.573 -6.1757 67 19 5 0 0 0 0.14602 1 46817 46817 28.487 8.0332 1 88197000 + 61989 30029 41406 42334 72151 72151 -0.016770892333852316 SYDPDFNQL 9 Unmodified _SYDPDFNQL_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7411499023438 2 549.740554 1097.46655 0.50024 0.000275 -0.45646 -0.00025094 0.043773 2.4064E-05 549.7401539243193 54.929 0.45914 54.929 54.689 55.149 0 67 19 5 0 0 0 0.23158 1 30588 30588 20.454 8.8133 1 64660000 61990 981 41407 42335 72152 72152 -0.0782802093265218 SYDPDFNQL 9 Unmodified _SYDPDFNQL_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7406616210938 2 549.740554 1097.46655 0.80732 0.00044382 -0.097504 -5.3602E-05 0.70982 0.00039022 549.7404503959852 63.118 0.57698 56.942 56.636 57.213 -6.1757 76 30 3 0 0 0 0.32871 2 40637 40637;40773 15.847 7.2539 1 176050000 61991 981 41407 42335 72153;72154 72153 -0.0782802093265218 SYDPEDEASL 10 Unmodified _SYDPEDEASL_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-3|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8254699707031 3 375.824264 1124.45096 0.43821 0.00016469 0.80431 0.00030228 1.2425 0.00046697 375.8246159845066 90.416 0.40377 89.922 89.735 90.139 -0.49457 45 18 3 0 0 0 0.67033 1 49386 49386 5.7834 0.38072 1 2238400 61992 10371 41408 42336 72155 72155 -0.1062835224038281 SYDPLRIYL 9 Unmodified _SYDPLRIYL_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3084716796875 2 570.308406 1138.60226 -0.45047 -0.00025691 -0.013299 -7.5848E-06 -0.46377 -0.00026449 570.3085574170993 77.441 0.33575 76.958 76.765 77.101 -0.4826 25 16 2 0 0 0 0.078314 1 42403 42403 38.176 12.776 1 2526300 61993 4754 41409 42337 72156 72156 0.03850298648808348 SYDPLRIYL 9 Unmodified _SYDPLRIYL_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.31005859375 2 570.308406 1138.60226 1.3431 0.00076601 2.5061 0.0014293 3.8493 0.0021953 570.3093518600464 94.223 0.47792 88.047 87.788 88.266 -6.1757 49 27 2 0 0 0 0.017075 2 62356 62356;62475 66.457 30.33 1 12057000 61994 4754 41409 42337 72157;72158 72157 0.03850298648808348 SYDPLRIYLF 10 Unmodified _SYDPLRIYLF_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8423461914062 2 643.842613 1285.67067 NaN NaN NaN NaN NaN NaN NaN 92.833 1 92.376 91.876 92.876 -0.4574 0 0 0 0.66191 1 50735 50735 18.373 9.6277 1 61995 4754 41410 42338 72159 72159 0.039265432286583746 SYDPLRIYLF 10 Unmodified _SYDPLRIYLF_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8439331054688 2 643.842613 1285.67067 1.5414 0.0009924 -0.15606 -0.00010048 1.3853 0.00089193 643.842488913467 92.251 0.36339 92.281 92.078 92.441 0.03019 48 13 5 0 0 0 0.052718 2 51369 51270;51369 57.249 44.207 1 22300000 61996 4754 41410 42338 72160;72161 72161 0.039265432286583746 SYDPLRIYLF 10 Unmodified _SYDPLRIYLF_ 0 0 0 ENST00000480929.1_1_2:219612227-219612548:+|nuORF;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENSG00000135912|ENST00000392102|TTLL4 ENST00000480929.1_1_2:219612227-219612548:+|nuORF ENST00000480929.1_1_2:219612227-219612548:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.8426513671875 2 643.842613 1285.67067 0.20238 0.0001303 0.3044 0.00019598 0.50678 0.00032628 643.8426476803986 99.731 0.14919 93.555 93.474 93.623 -6.1757 29 9 4 0 0 0 0.13008 1 66530 66530 42.312 31.513 1 151360000 61997 4754 41410 42338 72162 72162 0.039265432286583746 SYDPTIENTF 10 Unmodified _SYDPTIENTF_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7664794921875 2 593.766768 1185.51898 -0.45188 -0.00026831 -0.037991 -2.2558E-05 -0.48987 -0.00029087 593.7666651329712 56.038 0.33422 56.038 55.892 56.227 0 54 16 4 0 0 0 0.061704 2 31237 31124;31237 74.929 63.434 1 64590000 61998 2444 41411 42339 72163;72164 72164 -0.06635482589740604 SYDPTIENTF 10 Unmodified _SYDPTIENTF_ 0 0 0 ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB ENSG00000106615|ENST00000262187|RHEB MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.782470703125 2 593.766768 1185.51898 1.132 0.00067213 -0.63518 -0.00037715 0.49679 0.00029498 593.7661051898135 64.406 0.47214 58.231 58.053 58.525 -6.1757 79 25 4 0 0 0 0.061704 3 41604 41604;41625;41757 74.929 57.987 1 91984000 61999 2444 41411 42339 72165;72166;72167 72165 -0.06635482589740604 SYDPVLNPVL 10 Unmodified _SYDPVLNPVL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.8004760742188 2 558.800414 1115.58628 0.40282 0.0002251 0.56719 0.00031695 0.97002 0.00054204 558.8007821717486 75.85 0.31216 75.85 75.647 75.959 0 32 13 3 0 0 0 0.29752 1 42214 42214 27.629 15.989 1 1568600 62000 9907 41412 42340 72168 72168 0.033105924118899566 SYDQNDGFYF 10 Unmodified _SYDQNDGFYF_ 0 0 0 nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644 nc|ENSG00000122482|Q9H582-2|ZNF644 nc|ENSG00000122482|Q9H582-2|ZNF644 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.250732421875 2 628.248743 1254.48293 NaN NaN NaN NaN NaN NaN NaN 62.366 1 62.366 61.866 62.866 0 0 0 0 0.97302 1 34783 34783 3.5965 1.2938 1 62001 3640 41413 42341 72169 72169 -0.13412939766567433 SYDSKLVWF 9 Unmodified _SYDSKLVWF_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.786865234375 2 572.787307 1143.56006 0.29577 0.00016941 2.1138 0.0012107 2.4095 0.0013802 572.7878805193814 73.937 0.21179 73.98 73.884 74.096 0.043976 19 9 3 0 0 0 0.10247 1 40767 40767 32.786 18.88 1 2899600 62002 10837 41414 42342 72170 72170 -0.005976767595711863 SYDSVLALV 9 Unmodified _SYDSVLALV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.5142822265625 1 966.514239 965.506963 0.16402 0.00015852 0.91008 0.00087961 1.0741 0.0010381 966.5148389933852 86.171 0.33553 86.171 86.043 86.379 0 25 16 2 0 0 0 0.2143 2 47705 47705;47809 21.747 13.153 1 1055000 62003 6120 41415 42343 72171;72172 72171 0.022829454577504293 SYDSVLALV 9 Unmodified _SYDSVLALV_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.5161743164062 1 966.514239 965.506963 0.38742 0.00037445 0.73927 0.00071451 1.1267 0.001089 966.5146700147073 86.702 0.32375 86.199 86.02 86.344 -0.50318 26 12 3 0 0 0 0.016184 2 47388 47388;47483 67.344 38.857 1 1839700 62004 6120 41415 42343 72173;72174 72173 0.022829454577504293 SYDSWDYSELD 11 Unmodified _SYDSWDYSELD_ 0 0 0 ENSG00000184949|ENST00000535113|FAM227A;nc|ENSG00000184949|F5H4B4-2|FAM227A ENSG00000184949|ENST00000535113|FAM227A ENSG00000184949|ENST00000535113|FAM227A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.2647705078125 2 690.26733 1378.52011 -0.42056 -0.0002903 -0.83543 -0.00057667 -1.256 -0.00086696 690.2662592865148 71.15 0.14825 71.15 71.065 71.214 0 7 5 2 0 0 0 0.73115 1 39660 39660 1.3295 0 1 421880 62005 9306 41416 42344 72175 72175 -0.154013130114663 SYDTITVHW 9 Unmodified _SYDTITVHW_ 0 0 0 ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1 ENSG00000101871|ENST00000317552|MID1 ENSG00000101871|ENST00000317552|MID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2677612304688 2 561.266739 1120.51892 0.42039 0.00023595 0.65674 0.0003686 1.0771 0.00060455 561.267053796327 59.853 0.25489 59.362 59.272 59.527 -0.49079 31 12 3 0 0 0 0.070838 1 32587 32587 39.957 19.504 1 12521000 62006 1996 41417 42345 72176 72176 -0.036514377990670255 SYDTITVHW 9 Unmodified _SYDTITVHW_ 0 0 0 ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1 ENSG00000101871|ENST00000317552|MID1 ENSG00000101871|ENST00000317552|MID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.266845703125 2 561.266739 1120.51892 0.56028 0.00031446 -1.0053 -0.00056425 -0.44503 -0.00024978 561.2665411592109 65.42 0.86067 59.244 58.897 59.758 -6.1757 100 49 3 0 0 0 0.019303 2 42429 42302;42429 64.236 44.874 1 40253000 62007 1996 41417 42345 72177;72178 72178 -0.036514377990670255 SYDVDVNQI 9 Unmodified _SYDVDVNQI_ 0 0 0 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7493286132812 2 526.748379 1051.4822 0.43135 0.00022721 1.0145 0.00053436 1.4458 0.00076157 526.7491438480502 83.206 0.32667 82.709 82.511 82.837 -0.49751 20 12 2 0 0 0 0.40476 1 45534 45534 12.241 1.1262 1 1174800 62008 8759 41418 42346 72179 72179 -0.041477344156191975 SYDYGDHGSD 10 Unmodified _SYDYGDHGSD_ 0 0 0 ENST00000552565.5_1_12:113753225-113756937:-|nuORF ENST00000552565.5_1_12:113753225-113756937:-|nuORF ENST00000552565.5_1_12:113753225-113756937:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.19970703125 2 558.19925 1114.38395 0.59582 0.00033259 1.0562 0.00058959 1.6521 0.00092217 558.1997320688457 52.884 0.46294 52.884 52.657 53.12 0 66 21 5 0 0 0 0.69377 1 29248 29248 3.5965 1.5367 1 7194200 62009 15180 41419 42347 72180 72180 -0.16866962731455715 SYDYGDHGSD 10 Unmodified _SYDYGDHGSD_ 0 0 0 ENST00000552565.5_1_12:113753225-113756937:-|nuORF ENST00000552565.5_1_12:113753225-113756937:-|nuORF ENST00000552565.5_1_12:113753225-113756937:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 558.19925 1114.38395 0.59582 0.00033259 1.0562 0.00058959 1.6521 0.00092217 558.1997320688457 52.884 0.46294 52.884 52.657 53.12 0 -0.11701 -0.00010368 NaN 3.5965 66 21 5 NaN NaN NaN NaN 0 NaN NaN 0 7194200 62010 15180 41419 42347 -0.16866962731455715 SYECQCHSGF 10 Unmodified _SYECQCHSGF_ 0 0 0 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 ENSG00000159307|ENST00000360835|SCUBE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.70703125 2 580.710416 1159.40628 0.20504 0.00011907 -0.63003 -0.00036587 -0.42499 -0.0002468 580.7097012399447 64.202 0.30161 64.202 64.022 64.324 0 20 12 2 0 0 0 0.70951 1 35832 35832 1.8442 0 1 896640 62011 6644 41420 42348 72181 72181 -0.16704777859058595 SYEFQKPSL 9 Unmodified _SYEFQKPSL_ 0 0 0 nc|ENSG00000184716|A6NH21|SERINC4;nc|ENSG00000184716|A6NH21-2|SERINC4;ENST00000448553.5_1_15:44087200-44089477:-|nuORF nc|ENSG00000184716|A6NH21|SERINC4 nc|ENSG00000184716|A6NH21|SERINC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.3082275390625 2 549.776939 1097.53933 1.0779 0.00059263 -0.88565 -0.00048691 0.1923 0.00010572 550.2784896250471 87.025 0.84567 80.85 80.358 81.203 -6.1757 52 37 3 0 0 0 0.18882 1 57147 57147 15.847 3.3156 1 11385000 62012 16457 41421 42349 72182 72182 -0.005542671392504417 SYEKVEFAL 9 Unmodified _SYEKVEFAL_ 0 0 0 REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF REV__ENST00000495272.5_1_1:95705425-95712423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7807006835938 2 543.279315 1084.54408 -0.22238 -0.00012082 -0.17976 -9.7658E-05 -0.40214 -0.00021847 543.2792209267226 55.697 0.18806 55.628 55.517 55.705 -0.068741 18 9 3 0 0 0 0.023481 1 30262 30262 60.074 2.3519 1 5204100 + 62013 19345 41422 42350 72183 72183 0.005186170035358373 SYELPDGQF 9 Unmodified _SYELPDGQF_ 0 0 0 ACTC1|p.V249F|1|0.2|ENSG00000159251|chr15:34792153-34792153|C/A|missense_variant ACTC1|p.V249F|1|0.2|ENSG00000159251|chr15:34792153-34792153|C/A|missense_variant ACTC1|p.V249F|1|0.2|ENSG00000159251|chr15:34792153-34792153|C/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2449340820312 2 528.237647 1054.46074 1.1084 0.0005855 0.93042 0.00049148 2.0388 0.001077 528.238153692858 47.3 0.53571 42.22 42.053 42.588 -5.0805 45 33 3 0 0 0 0.39863 1 29299 29299 12.532 0.89125 1 12365000 62014 8 41423 42351 72184 72184 -0.06431119444323485 SYELRYFQI 9 Unmodified _SYELRYFQI_ 0 0 0 ENSG00000116251|ENST00000234875|RPL22;ENST00000480427.1_1_12:125420028-125420310:-|nuORF ENSG00000116251|ENST00000234875|RPL22 ENSG00000116251|ENST00000234875|RPL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8118896484375 2 609.811313 1217.60807 0.5643 0.00034412 0.10144 6.1859E-05 0.66574 0.00040597 610.3130691056568 71.668 0.21919 71.192 71.047 71.266 -0.47609 15 8 2 0 0 0 0.331 1 39239 39239 21.537 14.814 1 681730 62015 3209 41424 42352 72185 72185 0.007973971604542385 SYELRYFQI 9 Unmodified _SYELRYFQI_ 0 0 0 ENSG00000116251|ENST00000234875|RPL22;ENST00000480427.1_1_12:125420028-125420310:-|nuORF ENSG00000116251|ENST00000234875|RPL22 ENSG00000116251|ENST00000234875|RPL22 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.811313 1217.60807 1.3532 0.00082522 2.0736 0.0012645 3.4269 0.0020898 610.3136608195418 71.067 0.16421 71.103 71.064 71.228 0.035507 -0.044391 0.0019526 NaN 21.537 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 783170 62016 3209 41424 42352 0.007973971604542385 SYEREILY 8 Unmodified _SYEREILY_ 0 0 0 REV__IFNA10|p.K158E|1|0.04|ENSG00000186803|chr9:21206626-21206626|T/C|missense_variant REV__IFNA10|p.K158E|1|0.04|ENSG00000186803|chr9:21206626-21206626|T/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7708740234375 2 536.769114 1071.52368 1.0965 0.00058858 1.4906 0.0008001 2.5871 0.0013887 536.7699103821278 96.198 0.73587 90.022 89.569 90.305 -6.1757 109 44 4 0 0 0 0.72664 1 63784 63784 14.838 0 1 29711000 + 62017 29390 41425 42353 72186 72186 -0.00922553656278069 SYEVTNFR 8 Unmodified _SYEVTNFR_ 0 0 0 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 nc|ENSG00000211815|A0A075B6V5|TRAV36DV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2477722167969 2 508.245806 1014.47706 -0.1172 -5.9565E-05 -0.68685 -0.00034909 -0.80404 -0.00040865 508.24542331373806 25.023 0.50574 25.023 24.678 25.184 0 88 41 3 0 0 0 0.67686 1 12719 12719 19.257 6.7254 1 12568000 62018 16534 41426 42354 72187 72187 -0.029599934875705003 SYEYLFSGLF 10 Unmodified _SYEYLFSGLF_ 0 0 0 REV__CON__P02769 REV__CON__P02769 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.293212890625 2 613.292422 1224.57029 1.0274 0.00063008 0.5366 0.00032909 1.564 0.00095918 613.2928299430883 80.237 0.29684 79.747 79.587 79.884 -0.48933 25 11 3 0 0 0 0.54684 1 43928 43928 13.906 3.8321 1 1035800 + + 62019 16843 41427 42355 72188 72188 -0.03301113825000357 SYFEEGRTL 9 Unmodified _SYFEEGRTL_ 0 0 0 nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6;TRPC6|p.P761S|1|0.16|ENSG00000137672|chr11:101471311-101471311|G/A|missense_variant nc|ENSG00000137672|Q9Y210-2|TRPC6 nc|ENSG00000137672|Q9Y210-2|TRPC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.764892578125 2 551.264196 1100.51384 0.45864 0.00025283 2.183 0.0012034 2.6417 0.0014563 551.2657918574797 94.049 0.32148 93.628 93.457 93.778 -0.42044 19 16 2 0 0 0 0.20727 1 51364 51364 7.9102 0.62092 1 1312400 62020 4955 41428 42356 72189 72189 -0.032397416616504415 SYFEEIALKF 10 Unmodified _SYFEEIALKF_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 623.376953125 2 623.821347 1245.62814 1.0048 0.00062684 0.76489 0.00047715 1.7697 0.001104 623.8212962812526 98.399 0.089233 92.224 92.19 92.28 -6.1757 7 5 2 0 0 0 0.20646 1 65306 65306 29.841 12.728 1 16234000 62021 2181 41429 42357 72190 72190 0.015151481003840672 SYFEHNLETW 10 Unmodified _SYFEHNLETW_ 0 0 0 ENSG00000204590|ENST00000376621|GNL1 ENSG00000204590|ENST00000376621|GNL1 ENSG00000204590|ENST00000376621|GNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.29345703125 2 663.293485 1324.57242 0.29275 0.00019418 -1.1824 -0.00078425 -0.88961 -0.00059007 663.2924996185051 58.702 0.20067 58.211 58.09 58.29 -0.49079 16 9 2 0 0 0 0.1552 1 31916 31916 53.833 40.79 1 2374100 62022 10305 41430 42358 72191 72191 -0.07688685087191516 SYFGSFSSL 9 Unmodified _SYFGSFSSL_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.4508056640625 1 994.451639 993.444362 0.36619 0.00036416 -0.11847 -0.00011781 0.24773 0.00024635 994.4513228323436 75.883 0.2748 75.406 75.276 75.551 -0.47714 21 11 2 0 0 0 0.042911 2 41520 41520;41616 48.346 26.599 1 1824800 62023 5663 41431 42359 72192;72193 72192 -0.052622006104115826 SYFGSFSSL 9 Unmodified _SYFGSFSSL_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7295837402344 2 497.729458 993.444362 NaN NaN NaN NaN NaN NaN NaN 75.917 1 75.44 74.94 75.94 -0.47714 0 0 0 0.82396 1 41560 41560 4.756 1.8668 1 62024 5663 41431 42359 72194 72194 -0.052622006104115826 SYFGSFSSL 9 Unmodified _SYFGSFSSL_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.45703125 1 994.451639 993.444362 0.89849 0.00089351 0.066349 6.5981E-05 0.96484 0.00095949 994.451484365381 83.568 0.39698 77.392 77.17 77.567 -6.1757 32 20 2 0 0 0 0.0083938 2 54893 54893;55033 108 65.902 1 8458800 62025 5663 41431 42359 72195;72196 72195 -0.052622006104115826 SYFGYAVDFHI 11 Unmodified _SYFGYAVDFHI_ 0 0 0 ENSG00000077943|ENST00000378076|ITGA8 ENSG00000077943|ENST00000378076|ITGA8 ENSG00000077943|ENST00000378076|ITGA8 MSMS AL20221201_MKP_PDAC_01 4 659.8074340820312 2 659.808771 1317.60299 NaN NaN NaN NaN NaN NaN NaN 100.78 1 94.603 94.103 95.103 -6.1757 0 0 0 0.61053 1 67482 67482 20.415 4.5674 1 62026 1229 41432 42360 72197 72197 -0.043109067021305236 SYFKNTDLW 9 Unmodified _SYFKNTDLW_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000101109|ENST00000372806|STK4 nc|ENSG00000104375|Q13188-2|STK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2822265625 2 587.282389 1172.55022 NaN NaN NaN NaN NaN NaN NaN 58.932 1 58.441 57.941 58.941 -0.49079 0 0 0 0.76439 1 32056 32056 7.2892 2.5332 1 62027 2201;1913 41433 42361 72198 72198 -0.02914864764943559 SYFKSMELL 9 Unmodified _SYFKSMELL_ 0 0 0 REV__ENSG00000182858|ENST00000330817|ALG12 REV__ENSG00000182858|ENST00000330817|ALG12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.2092895507812 3 373.191454 1116.55253 -0.66496 -0.00024816 3.0765 0.0011481 2.4115 0.00089996 373.1923334119114 30.034 0.10433 30.034 29.953 30.057 0 6 4 2 0 0 0 0.21819 1 15571 15571 1.0715 0 1 1304700 + 62028 23301 41434 42362 72199 72199 -0.0010815235148129432 SYFLEHAF 8 Unmodified _SYFLEHAF_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2391357421875 2 507.239993 1012.46543 0.085308 4.3272E-05 -3.3029 -0.0016754 -3.2176 -0.0016321 507.2383052039447 16.519 0.18523 13.962 13.839 14.024 -2.557 33 27 2 0 0 0 0.50586 1 8537 8537 34.187 0 1 2429700 + 62029 17961 41435 42363 72200 72200 -0.0403019051091178 SYFPKILTF 9 Unmodified _SYFPKILTF_ 0 0 0 nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3102416992188 2 558.310418 1114.60628 NaN NaN NaN NaN NaN NaN NaN 84.603 1 84.666 84.166 85.166 0.063171 0 0 0 0.12101 1 46820 46820 40.239 20.982 1 62030 5113 41436 42364 72201 72201 0.05356388142513424 SYFPKILTF 9 Unmodified _SYFPKILTF_ 0 0 0 nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 nc|ENSG00000138821|Q9C0K1-2|SLC39A8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3084106445312 2 558.310418 1114.60628 0.26731 0.00014924 -0.43215 -0.00024128 -0.16485 -9.2036E-05 558.3098470919062 98.812 0.12624 92.636 92.576 92.702 -6.1757 15 9 2 0 0 0 0.018061 1 65600 65600 65.474 40.074 1 78114000 62031 5113 41436 42364 72202 72202 0.05356388142513424 SYFPTVPGVYI 11 Unmodified _SYFPTVPGVYI_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8265380859375 2 621.823889 1241.63323 2.3696 0.0014735 0.78813 0.00049008 3.1577 0.0019635 621.8244859701954 95.376 0.39124 95.38 95.184 95.575 0.004158 30 14 3 0 0 0 0.13889 1 52970 52970 37.974 20.861 1 4451400 62032 16209 41437 42365 72203 72203 0.02207451963067797 SYFPTVPGVYI 11 Unmodified _SYFPTVPGVYI_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8253784179688 2 621.823889 1241.63323 1.1219 0.00069764 0.38011 0.00023636 1.502 0.000934 621.8243789166097 100.07 0.13768 93.892 93.819 93.957 -6.1757 23 8 3 0 0 0 0.0011251 1 66824 66824 81.89 51.254 1 48771000 62033 16209 41437 42365 72204 72204 0.02207451963067797 SYFQQQLTF 9 Unmodified _SYFQQQLTF_ 0 0 0 ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9;ENST00000484812.1_1_6:52945793-52957386:+|nuORF ENST00000480463.6_1_6:52943619-52957704:+|nuORF ENST00000480463.6_1_6:52943619-52957704:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2835693359375 2 581.282389 1160.55022 1.3794 0.00080183 -2.435 -0.0014154 -1.0556 -0.0006136 581.2825077968733 79.283 0.10624 73.107 73.026 73.132 -6.1757 7 5 2 0 0 0 0.13231 1 51938 51938 29.841 9.387 1 9832700 62034 2864 41438 42366 72205 72205 -0.023628647649729828 SYFRWRETL 9 Unmodified _SYFRWRETL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2186889648438 3 419.884012 1256.63021 0.8388 0.0003522 -0.090802 -3.8126E-05 0.748 0.00031407 419.88398708217983 50.574 0.36295 50.52 50.325 50.688 -0.053871 61 17 5 0 0 0 0.037118 2 27307 27307;27407 51.488 27.687 1 50218000 62035 8065 41439 42367 72206;72207 72206 0.012156216288985888 SYFRWRETL 9 Unmodified _SYFRWRETL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.3233032226562 2 629.32238 1256.63021 0.99241 0.00062455 -0.35104 -0.00022092 0.64138 0.00040363 629.3221930121498 50.574 0.26071 50.52 50.408 50.669 -0.053871 20 12 2 0 0 0 0.098164 1 27331 27331 22.736 5.6234 1 8474700 62036 8065 41439 42367 72208 72208 0.012156216288985888 SYFRWRETL 9 Unmodified _SYFRWRETL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8846435546875 3 419.884012 1256.63021 1.3073 0.00054892 -0.58746 -0.00024666 0.71985 0.00030225 419.8837523552996 81.164 0.87681 74.988 74.566 75.443 -6.1757 99 49 3 0 0 0 0.043414 3 53266 53144;53266;53422 48.073 24.405 1 19641000 62037 8065 41439 42367 72209;72210;72211 72210 0.012156216288985888 SYFRWRETL 9 Unmodified _SYFRWRETL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.3242797851562 2 629.32238 1256.63021 0.8095 0.00050944 -0.1821 -0.0001146 0.62741 0.00039484 629.8236085149587 81.121 0.36325 74.945 74.77 75.133 -6.1757 29 20 2 0 0 0 0.02676 1 53223 53223 53.404 35.258 1 9646700 62038 8065 41439 42367 72212 72212 0.012156216288985888 SYFRWRETL 9 Unmodified _SYFRWRETL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MSMS AL20221201_MKP_PDAC_01 4 629.3235473632812 2 629.32238 1256.63021 NaN NaN NaN NaN NaN NaN NaN 81.313 1 75.137 74.637 75.637 -6.1757 0 0 0 0.26013 1 53366 53366 29.082 7.5446 1 62039 8065 41439 42367 72213 72213 0.012156216288985888 SYFSDIHDF 9 Unmodified _SYFSDIHDF_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7460327148438 2 565.743096 1129.47164 NaN NaN NaN NaN NaN NaN NaN 92.835 1 92.377 91.877 92.877 -0.4574 0 0 0 0.7453 1 50736 50736 7.9102 3.0131 1 62040 9821 41440 42368 72214 72214 -0.08791717070062077 SYFSYALNS 9 Unmodified _SYFSYALNS_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2385864257812 2 526.24019 1050.46583 0.44604 0.00023472 -2.1502 -0.0011315 -1.7042 -0.00089682 526.2388461359178 77.992 0.29441 77.992 77.833 78.127 0 15 12 2 0 0 0 0.45045 1 43374 43374 10.074 0 1 695370 + 62041 20072 41441 42369 72215 72215 -0.05738815581730705 SYFYEGDPTL 10 Unmodified _SYFYEGDPTL_ 0 0 0 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 REV__nc|ENSG00000121101|Q8IWB6-2|TEX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8442687988281 3 397.845 1190.51317 0.050909 2.0254E-05 -1.5442 -0.00061436 -1.4933 -0.00059411 397.8440874137908 61.536 0.51429 61.536 61.171 61.685 0 28 23 2 0 0 0 0.71123 1 34300 34300 0.69767 0.19171 1 923600 + 62042 29607 41442 42370 72216 72216 -0.07446581101385163 SYGASPPSPLE 11 Unmodified _SYGASPPSPLE_ 0 0 0 REV__ENSG00000205476|ENST00000380243|CCDC85C REV__ENSG00000205476|ENST00000380243|CCDC85C MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7618408203125 2 552.764029 1103.5135 0.27008 0.00014929 -3.9357 -0.0021755 -3.6656 -0.0020262 552.7617624687848 99.82 0.16911 93.644 93.558 93.727 -6.1757 18 12 2 0 0 0 0.33405 1 66567 66567 24.991 0.31707 1 53835000 + 62043 24229 41443 42371 72217 72217 -0.03411161381495731 SYGCQSPSFIF 11 Unmodified _SYGCQSPSFIF_ 0 0 0 ENSG00000232263|ENST00000416044|KRTAP25-1 ENSG00000232263|ENST00000416044|KRTAP25-1 ENSG00000232263|ENST00000416044|KRTAP25-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.2733764648438 2 618.273706 1234.53286 0.34101 0.00021084 0.39627 0.000245 0.73727 0.00045584 618.274220146535 70.542 0.35225 70.065 69.915 70.268 -0.47735 87 33 3 0 0 0 0.56638 1 38541 38541 13.042 0.51092 1 22451000 62044 10625 41444 42372 72218 72218 -0.07502528362260819 SYGDILHRM 9 Unmodified _SYGDILHRM_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5147399902344 3 364.514931 1090.52296 1.8986 0.00069207 -1.2227 -0.00044571 0.67586 0.00024636 364.51435485375106 49.53 0.076401 44.134 44.083 44.16 -5.3961 6 4 2 0 0 0 0.094149 1 30959 30959 32.037 21.887 1 34271000 62045 2218 41445 42373 72219 72219 -0.01867671576974317 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7738647460938 2 508.7742 1015.53385 0.21278 0.00010826 -0.74513 -0.0003791 -0.53235 -0.00027084 508.7737015981335 71.933 0.52094 71.933 71.699 72.219 0 109 24 6 0 0 0 0.045537 3 39974 39974;40074;40180 46.921 22.383 1 230800000 62046 1346 41446 42374 72220;72221;72222 72220 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7735900878906 2 508.7742 1015.53385 0.32139 0.00016352 -0.92955 -0.00047293 -0.60815 -0.00030941 508.7736035549834 72.32 0.87904 71.844 71.594 72.473 -0.47609 113 40 5 0 0 0 0.03327 2 39512 39512;39615 53.576 31.829 1 300810000 62047 1346 41446 42374 72223;72224 72223 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7737731933594 2 508.7742 1015.53385 0.80299 0.00040854 -0.68528 -0.00034865 0.11771 5.9888E-05 508.7736884868664 71.798 0.37228 71.837 71.642 72.014 0.039024 51 17 4 0 0 0 0.03327 1 39498 39498 53.576 25.089 1 18650000 62048 1346 41446 42374 72225 72225 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7748413085938 2 508.7742 1015.53385 0.77213 0.00039284 0.3118 0.00015863 1.0839 0.00055148 508.7743646157694 83.752 2.9059 77.577 75.73 78.636 -6.1757 446 161 5 0 0 0 0.023164 14 54197 53914;54070;54197;54338;54472;54604;54740;54857;54985;55111;55236;55363;55497;55645 60.39 38.643 1 375200000 62049 1346 41446 42374 72226;72227;72228;72229;72230;72231;72232;72233;72234;72235;72236;72237;72238;72239 72228 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20221201_MKP_PDAC_01 4 508.7746276855469 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 80.515 1 74.339 73.839 74.839 -6.1757 0 0 0 0.18911 1 52827 52827 32.117 12.678 1 62050 1346 41446 42374 72240 72240 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20221201_MKP_PDAC_01 4 508.7743225097656 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 81.348 1 75.172 74.672 75.672 -6.1757 0 0 0 0.20498 1 53391 53391 30.225 12.09 1 62051 1346 41446 42374 72241 72241 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20221201_MKP_PDAC_01 4 508.7759704589844 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 81.543 1 75.367 74.867 75.867 -6.1757 0 0 0 0.17247 1 53527 53527 34.102 18.255 1 62052 1346 41446 42374 72242 72242 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20221201_MKP_PDAC_01 4 508.775390625 2 508.7742 1015.53385 NaN NaN NaN NaN NaN NaN NaN 81.723 1 75.547 75.047 76.047 -6.1757 0 0 0 0.071041 1 53656 53656 50.855 29.108 1 62053 1346 41446 42374 72243 72243 0.02670054068948957 SYGDILHVI 9 Unmodified _SYGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF nc|ENSG00000082458|Q92796-3|DLG3 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.2091064453125 2 508.7742 1015.53385 0.66673 0.00033922 -0.7484 -0.00038077 -0.081669 -4.1551E-05 508.7743488089547 80.302 0.2826 74.126 73.975 74.258 -6.1757 19 16 2 0 0 0 0.12572 1 52733 52733 24.674 12.142 1 14456000 62054 1346 41446 42374 72244 72244 0.02670054068948957 SYGDLKNAI 9 Unmodified _SYGDLKNAI_ 0 0 0 ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5 ENST00000554929.1_1_14:70237619-70238175:+|nuORF ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7565612792969 2 490.756007 979.497461 0.13039 6.3988E-05 0.43325 0.00021262 0.56363 0.00027661 490.75629495465546 40.008 0.21567 40.008 39.873 40.089 0 17 10 2 0 0 0 0.028475 1 21482 21482 56.177 29.293 1 2811900 62055 1862 41447 42375 72245 72245 0.006891771722166595 SYGDLKNAI 9 Unmodified _SYGDLKNAI_ 0 0 0 ENST00000554929.1_1_14:70237619-70238175:+|nuORF;ENST00000554465.5_1_14:70237039-70238175:+|nuORF;nc|ENSG00000100650|Q13243-3|SRSF5;ENSG00000100650|ENST00000557154|SRSF5 ENST00000554929.1_1_14:70237619-70238175:+|nuORF ENST00000554929.1_1_14:70237619-70238175:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.756103515625 2 490.756007 979.497461 0.75033 0.00036823 -2.7693 -0.001359 -2.019 -0.00099082 490.7549736725205 45.773 0.26591 40.818 40.656 40.922 -4.9549 29 17 2 0 0 0 0.085319 1 28126 28126 36.506 9.6225 1 7348600 62056 1862 41447 42375 72246 72246 0.006891771722166595 SYGEEDFECEG 11 Unmodified _SYGEEDFECEG_ 0 0 0 ENST00000494125.1_1_7:150759074-150761528:+|nuORF ENST00000494125.1_1_7:150759074-150761528:+|nuORF ENST00000494125.1_1_7:150759074-150761528:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.1483154296875 3 422.148531 1263.42376 NaN NaN NaN NaN NaN NaN NaN 103.93 1 103.88 103.38 104.38 -0.048737 0 0 0 0.9435 1 57711 57711 0 0 1 62057 14327 41448 42376 72247 72247 -0.19741203843068433 SYGEEDLEPS 10 Unmodified _SYGEEDLEPS_ 0 0 0 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 REV__nc|ENSG00000118473|Q9BQI5-4|SGIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8256225585938 3 375.824264 1124.45096 1.468 0.00055172 1.3248 0.0004979 2.7928 0.0010496 375.824814201097 99.473 0.18438 93.297 93.214 93.399 -6.1757 21 11 2 0 0 0 0.54684 1 66226 66226 8.4443 0 1 48492000 + 62058 19149 41449 42377 72248 72248 -0.1062835224038281 SYGGGGED 8 Unmodified _SYGGGGED_ 0 0 0 REV__ENSG00000182255|ENST00000328224|KCNA4 REV__ENSG00000182255|ENST00000328224|KCNA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 740.90966796875 1 741.268589 740.261313 0.1514 0.00011222 -0.76606 -0.00056786 -0.61466 -0.00045563 741.2678800722399 97.957 0.6062 97.714 97.645 98.251 -0.24277 28 22 2 0 0 0 8.7369 1 53533 53533 0 0 1 1003800 + 62059 23255 41450 42378 72249 72249 -0.11920754672235034 SYGKINILL 9 Unmodified _SYGKINILL_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.1954345703125 2 510.808042 1019.60153 0.18307 9.3514E-05 -0.82412 -0.00042097 -0.64105 -0.00032745 510.8074871093731 67.168 0.36203 66.685 66.482 66.844 -0.48218 28 16 2 0 0 0 0.1325 1 36638 36638 32.305 6.9062 1 5542000 62060 2874 41451 42379 72250 72250 0.09251503999746546 SYGKINILL 9 Unmodified _SYGKINILL_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8077392578125 2 510.808042 1019.60153 1.1317 0.00057809 -0.76514 -0.00039084 0.36658 0.00018725 510.8074628700482 66.685 0.32911 66.694 66.519 66.849 0.0095596 36 15 3 0 0 0 0.0082353 1 36563 36563 96.111 27.006 1 18281000 62061 2874 41451 42379 72251 72251 0.09251503999746546 SYGPVAYHL 9 Unmodified _SYGPVAYHL_ 0 0 0 nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7533569335938 2 503.753267 1005.49198 -0.23829 -0.00012004 1.3493 0.00067969 1.111 0.00055965 503.75384592981953 48.707 0.29729 48.707 48.531 48.828 0 39 13 4 0 0 0 0.068777 1 26717 26717 40.449 11.962 1 15219000 62062 1939 41452 42380 72252 72252 -0.010545016195919743 SYGPVAYHL 9 Unmodified _SYGPVAYHL_ 0 0 0 nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7537841796875 2 503.753267 1005.49198 -0.071285 -3.591E-05 1.0396 0.00052372 0.96834 0.00048781 503.7539274724099 49.038 0.31833 48.666 48.48 48.799 -0.37172 45 15 4 0 0 0 0.040472 2 26304 26304;26410 49.669 21.182 1 23837000 62063 1939 41452 42380 72253;72254 72253 -0.010545016195919743 SYGPVAYHL 9 Unmodified _SYGPVAYHL_ 0 0 0 nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.753267 1005.49198 0.33871 0.00017062 1.287 0.00064834 1.6257 0.00081897 503.75339258723744 48.732 0.15944 48.688 48.555 48.714 -0.04369 0.0010077 8.027E-05 NaN 49.669 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1009000 62064 1939 41452 42380 -0.010545016195919743 SYGSVFKAI 9 Unmodified _SYGSVFKAI_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3 nc|ENSG00000104375|Q13188-2|STK3 nc|ENSG00000104375|Q13188-2|STK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2642211914062 2 486.263468 970.512382 NaN NaN NaN NaN NaN NaN NaN 53.908 1 53.908 53.408 54.408 0 0 0 0 0.20153 1 29906 29906 30.637 9.7653 1 62065 2201 41453 42381 72255 72255 0.025946690402406603 SYGSVFKAI 9 Unmodified _SYGSVFKAI_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3 nc|ENSG00000104375|Q13188-2|STK3 nc|ENSG00000104375|Q13188-2|STK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2635192871094 2 486.263468 970.512382 0.22201 0.00010795 -0.33551 -0.00016315 -0.11351 -5.5194E-05 486.26320407855195 54.406 0.35924 53.94 53.784 54.143 -0.46664 53 18 4 0 0 0 0.06294 2 29467 29467;29572 41.84 24.897 1 53590000 62066 2201 41453 42381 72256;72257 72256 0.025946690402406603 SYGSVFKAI 9 Unmodified _SYGSVFKAI_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3 nc|ENSG00000104375|Q13188-2|STK3 nc|ENSG00000104375|Q13188-2|STK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2637329101562 2 486.263468 970.512382 0.087144 4.2375E-05 0.88849 0.00043204 0.97564 0.00047442 486.2637928837866 54.055 0.29871 53.988 53.843 54.142 -0.066936 47 14 4 0 0 0 0.047788 2 29308 29308;29408 45.7 25.246 1 17083000 62067 2201 41453 42381 72258;72259 72258 0.025946690402406603 SYGSVFKAI 9 Unmodified _SYGSVFKAI_ 0 0 0 nc|ENSG00000104375|Q13188-2|STK3;ENSG00000104375|ENST00000419617|STK3 nc|ENSG00000104375|Q13188-2|STK3 nc|ENSG00000104375|Q13188-2|STK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.263671875 2 486.263468 970.512382 0.9589 0.00046628 0.21788 0.00010595 1.1768 0.00057223 486.2637971755693 59.874 0.46841 53.76 53.572 54.041 -6.1147 65 26 3 0 0 0 0.08691 2 38540 38400;38540 36.127 14.38 1 196040000 62068 2201 41453 42381 72260;72261 72261 0.025946690402406603 SYGVVQLF 8 Unmodified _SYGVVQLF_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.484130859375 1 912.482545 911.475269 0.31135 0.0002841 2.1026 0.0019186 2.4139 0.0022027 912.4850749607253 81.96 0.34446 81.465 81.262 81.606 -0.4952 18 12 2 0 0 0 0.5284 1 44859 44859 32.117 17.535 1 766240 62069 7661 41454 42382 72262 72262 0.015989974944773166 SYGWSFYFGG 10 Unmodified _SYGWSFYFGG_ 0 0 0 ENSG00000142408|ENST00000270458|CACNG8 ENSG00000142408|ENST00000270458|CACNG8 ENSG00000142408|ENST00000270458|CACNG8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2503662109375 2 585.748182 1169.48181 -0.49443 -0.00028961 -0.083033 -4.8636E-05 -0.57746 -0.00033825 585.7484138031182 20.197 0.28331 20.226 20.135 20.418 0.028355 21 14 2 0 0 0 0.24012 1 10313 10313 0 0 1 551110 62070 5412 41455 42383 72263 72263 -0.0961510934484977 SYGYVRAEVL 10 Unmodified _SYGYVRAEVL_ 0 0 0 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.3036499023438 2 578.803488 1155.59242 0.59752 0.00034585 -2.5511 -0.0014766 -1.9536 -0.0011307 578.8025624603463 66.543 0.50976 60.368 60.027 60.537 -6.1757 42 28 2 0 0 0 0.21783 1 43138 43138 13.042 4.2971 1 18085000 62071 6895 41456 42384 72264 72264 0.020851106434292888 SYHDFLDFL 9 Unmodified _SYHDFLDFL_ 0 0 0 nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 nc|ENSG00000243244|Q9Y6Q2-3|STON1 MSMS AL20221201_MKP_PDAC_01 4 578.8301391601562 2 578.769114 1155.52368 NaN NaN NaN NaN NaN NaN NaN 101.05 1 94.877 94.377 95.377 -6.1757 0 0 0 0.7243 1 67726 67726 8.5933 0.68312 1 62072 986 41457 42385 72265 72265 -0.04786553656299475 SYHECGHHT 9 Unmodified _SYHECGHHT_ 0 0 0 REV__ENSG00000143178|ENST00000367821|TBX19 REV__ENSG00000143178|ENST00000367821|TBX19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.4749145507812 3 357.475135 1069.40358 -0.64194 -0.00022948 0.15765 5.6354E-05 -0.48429 -0.00017312 357.4752137181784 48.664 0.33718 48.664 48.47 48.808 0 41 15 3 0 0 0 0.5029 1 26689 26689 4.5289 0 1 8849100 + 62073 20611 41458 42386 72266 72266 -0.128348652016939 SYHGSEHRS 9 Unmodified _SYHGSEHRS_ 0 0 0 REV__ENST00000347310.9_1_1:67632201-67635079:+|nuORF REV__ENST00000347310.9_1_1:67632201-67635079:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7750244140625 2 530.233761 1058.45297 0.22652 0.00012011 -2.5469 -0.0013505 -2.3204 -0.0012303 530.2323538093635 65.157 0.1754 64.673 64.595 64.77 -0.48428 11 7 2 0 0 0 0.209 1 35563 35563 7.2892 0.56607 1 872620 + 62074 25765 41459 42387 72267 72267 -0.07391833921246871 SYHLPHCIAVY 11 Unmodified _SYHLPHCIAVY_ 0 0 0 REV__nc|ENSG00000220721|Q8NHA8|OR1F12P REV__nc|ENSG00000220721|Q8NHA8|OR1F12P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8829345703125 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 33.642 1 33.671 33.171 34.171 0.028934 0 0 0 0.94144 1 17707 17707 0.50596 0.051438 1 + 62075 29947 41460 42388 72268 72268 -0.016068539630396117 SYHLPLAHHI 10 Unmodified _SYHLPLAHHI_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8811340332031 3 396.548852 1186.62473 -0.57355 -0.00022744 -3.0438 -0.001207 -3.6174 -0.0014345 396.54763239755937 18.275 0.084375 18.275 18.216 18.301 0 15 12 2 0 0 0 0.68719 1 9064 9064 4.1895 2.1035 1 578680 62076 5656 41461 42389 72269 72269 0.03887942837081937 SYHLRRHESCH 11 Unmodified _SYHLRRHESCH_ 0 0 0 ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 ENSG00000136451|ENST00000581208|VEZF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 712.8336791992188 2 712.833651 1423.65275 NaN NaN NaN NaN NaN NaN NaN 75.117 1 75.117 74.617 75.617 0 0 0 0 0.9435 1 41790 41790 0 0 1 62077 4822 41462 42390 72270 72270 -0.04213102245103073 SYHLTEPSSF 10 Unmodified _SYHLTEPSSF_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2661743164062 2 584.269478 1166.5244 0.38563 0.00022531 0.90299 0.00052759 1.2886 0.0007529 584.2696712899241 78.523 1.0798 72.347 72.155 73.235 -6.1757 143 63 3 0 0 0 0.2178 2 51370 51370;51511 32.305 9.6297 1 58826000 62078 7420 41463 42391 72271;72272 72271 -0.052197590072410094 SYHMSSRLL 9 Unmodified _SYHMSSRLL_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.8978271484375 3 365.186814 1092.53861 0.92432 0.00033755 1.1991 0.0004379 2.1234 0.00077545 365.1875674379461 24.44 0.23288 21.613 21.545 21.778 -2.8273 29 12 3 0 0 0 0.19891 1 13361 13361 7.609 1.4171 1 3457400 + 62079 22602 41464 42392 72273 72273 -0.0039538505991458806 SYHQFIHLL 9 Unmodified _SYHQFIHLL_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5414428710938 3 386.541586 1156.60293 0.61873 0.00023916 -0.02348 -9.0759E-06 0.59525 0.00023009 386.5414725745669 58.317 0.27844 58.256 58.135 58.414 -0.060722 26 13 3 0 0 0 0.35911 1 31789 31789 14.405 9.1085 1 4461800 62080 3126 41465 42393 72274 72274 0.030891380885123 SYHQFIHLL 9 Unmodified _SYHQFIHLL_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61417336-61434009:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5427551269531 3 386.541586 1156.60293 1.3794 0.00053319 0.8781 0.00033942 2.2575 0.00087261 386.87625280654515 91.585 0.25749 85.409 85.252 85.509 -6.1757 21 13 2 0 0 0 0.021948 1 60521 60521 61.602 40.065 1 8625300 62081 3126 41465 42393 72275 72275 0.030891380885123 SYHQWHLI 8 Unmodified _SYHQWHLI_ 0 0 0 REV__ENSG00000108590|ENST00000225728|MED31 REV__ENSG00000108590|ENST00000225728|MED31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2714233398438 2 542.272158 1082.52976 0.16712 9.0626E-05 -1.2777 -0.00069287 -1.1106 -0.00060224 542.2715427308882 97.299 0.37263 97.056 96.796 97.169 -0.24277 39 16 3 0 0 0 0.80143 1 53061 53061 5.7604 0.52976 1 2287000 + 62082 18619 41466 42394 72276 72276 -0.008199906340905727 SYHRNFNF 8 Unmodified _SYHRNFNF_ 0 0 0 REV__ENST00000399273.5_1_17:16664799-16664835:+|nuORF REV__ENST00000399273.5_1_17:16664799-16664835:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.2764282226562 2 542.75159 1083.48863 0.82828 0.00044955 1.3327 0.00072332 2.161 0.0011729 542.7512803790836 59.974 0.38686 53.86 53.713 54.1 -6.1147 22 20 2 0 0 0 8.7369 1 38710 38710 13.508 0 1 17411000 + 62083 26582 41467 42395 72277 72277 -0.04977751673595776 SYHRRYDF 8 Unmodified _SYHRRYDF_ 0 0 0 nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.242919921875 2 572.270147 1142.52574 0.36564 0.00020925 0.77973 0.00044622 1.1454 0.00065546 572.2707896181066 80.653 0.53242 80.653 80.472 81.004 0 42 24 3 0 0 0 0.80676 1 44958 44958 2.5775 0.51773 1 1207800 62084 4384 41468 42396 72278 72278 -0.03982080127821064 SYHRRYDFF 9 Unmodified _SYHRRYDFF_ 0 0 0 nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A nc|ENSG00000132294|Q14156-3|EFR3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8877868652344 3 430.871995 1289.59415 -0.048726 -2.0995E-05 -0.82857 -0.00035701 -0.87729 -0.000378 431.2061167214532 36.087 0.1968 36.112 35.99 36.187 0.024967 12 8 2 0 0 0 0.21885 1 19107 19107 0.96228 0.33545 1 923150 62085 4384 41469 42397 72279 72279 -0.03905835547971037 SYHSYMWNNF 10 Unmodified _SYHSYMWNNF_ 0 0 0 nc|ENSG00000163281|Q8TDQ7-4|GNPDA2;nc|ENSG00000163281|Q8TDQ7-5|GNPDA2;nc|ENSG00000163281|Q8TDQ7-3|GNPDA2;nc|ENSG00000163281|Q8TDQ7-2|GNPDA2;ENSG00000163281|ENST00000295448|GNPDA2 nc|ENSG00000163281|Q8TDQ7-4|GNPDA2 nc|ENSG00000163281|Q8TDQ7-4|GNPDA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.1854248046875 3 450.185362 1347.53426 0.65579 0.00029523 0.88965 0.00040051 1.5454 0.00069574 450.18560521076535 62.224 0.27845 61.736 61.615 61.894 -0.48764 46 12 5 0 0 0 0.69064 1 33880 33880 1.9064 0 1 7560800 62086 6970 41470 42398 72280 72280 -0.1256089427349707 SYHTVLNKF 9 Unmodified _SYHTVLNKF_ 0 0 0 ENST00000545653.5_1_5:39373096-39373240:-|nuORF ENST00000545653.5_1_5:39373096-39373240:-|nuORF ENST00000545653.5_1_5:39373096-39373240:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 554.7922973632812 2 554.792924 1107.57129 NaN NaN NaN NaN NaN NaN NaN 62.177 1 56.001 55.501 56.501 -6.1757 0 0 0 0.10661 1 40101 40101 46.021 9.9768 1 62087 15096 41471 42399 72281 72281 0.02181145334543544 SYHVKTAFF 9 Unmodified _SYHVKTAFF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1905517578125 3 367.190553 1098.54983 -0.041176 -1.5119E-05 0.46076 0.00016919 0.41958 0.00015407 367.1905362325686 45.268 0.18433 45.24 45.138 45.322 -0.028011 20 9 3 0 0 0 0.12424 1 24299 24299 28.495 17.695 1 18326000 62088 7194 41472 42400 72282 72282 0.004497603058325694 SYHVKTAFF 9 Unmodified _SYHVKTAFF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.282470703125 2 550.282192 1098.54983 0.034413 1.8937E-05 0.47023 0.00025876 0.50464 0.0002777 550.282432790018 45.246 0.18433 45.218 45.138 45.322 -0.028011 17 9 3 0 0 0 0.018061 1 24302 24302 65.474 49.627 1 14513000 62089 7194 41472 42400 72283 72283 0.004497603058325694 SYHVKTAFF 9 Unmodified _SYHVKTAFF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1912841796875 3 367.190553 1098.54983 1.6733 0.0006144 -0.59178 -0.00021729 1.0815 0.00039711 367.19025204357945 50.058 0.44251 44.519 44.299 44.741 -5.5391 78 28 4 0 0 0 0.2143 2 31272 31272;31412 20.415 12.806 1 56078000 62090 7194 41472 42400 72284;72285 72284 0.004497603058325694 SYHVKTAFF 9 Unmodified _SYHVKTAFF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7846069335938 2 550.282192 1098.54983 0.95734 0.00052681 -2.8078 -0.0015451 -1.8505 -0.0010183 550.2798037005551 50.044 0.8457 44.505 44.125 44.971 -5.5391 92 54 2 0 0 0 0.012228 2 31347 31347;31498 74.2 45.713 1 45604000 62091 7194 41472 42400 72286;72287 72286 0.004497603058325694 SYHYECLSL 9 Unmodified _SYHYECLSL_ 0 0 0 ENST00000377630.9_1_20:18445902-18445998:-|nuORF ENST00000377630.9_1_20:18445902-18445998:-|nuORF ENST00000377630.9_1_20:18445902-18445998:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7486572265625 2 557.747324 1113.4801 0.92371 0.0005152 -0.64674 -0.00036072 0.27697 0.00015448 557.7470908641993 62.191 0.30204 61.703 61.57 61.872 -0.48764 29 13 3 0 0 0 0.23158 1 33878 33878 20.454 3.5113 1 3603000 62092 12522 41473 42401 72288 72288 -0.07210486425083218 SYIAAISARF 10 Unmodified _SYIAAISARF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8032836914062 2 549.800749 1097.58694 0.93032 0.00051149 1.334 0.00073346 2.2644 0.0012449 549.8011707972727 63.826 0.24742 63.816 63.672 63.919 -0.010532 28 11 3 0 0 0 0.036856 1 34897 34897 83.429 47.302 1 6404100 62093 4931;2996;2524 41474 42402 72289 72289 0.04205431851596586 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 990.5878295898438 1 990.58701 989.579734 0.2396 0.00023734 -0.093946 -9.3062E-05 0.14565 0.00014428 990.5866341075091 99.209 0.17606 99.016 98.942 99.118 -0.19321 15 5 4 0 0 0 0.0018186 1 54167 54167 133.7 51.838 1 19373000 62094 2113 41475 42403 72290 72290 0.0845269925117691 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7975769042969 2 495.797143 989.579734 0.41644 0.00020647 -0.25237 -0.00012512 0.16407 8.1345E-05 495.79701296342216 99.237 0.20027 99.044 98.917 99.118 -0.19321 17 6 4 0 0 0 0.0088975 1 54168 54168 104.8 41.236 1 10596000 62095 2113 41475 42403 72291 72291 0.0845269925117691 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 990.5902099609375 1 990.58701 989.579734 4.6409 0.0045972 -2.4788 -0.0024555 2.1621 0.0021418 990.5844501183011 99.045 0.24574 99.017 98.891 99.137 -0.028282 24 8 4 0 0 0 0.0018186 1 54981 54981 133.7 62.986 1 100070000 62096 2113 41475 42403 72292 72292 0.0845269925117691 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7987670898438 2 495.797143 989.579734 4.4697 0.0022161 -2.1005 -0.0010414 2.3693 0.0011747 495.79605639256744 99.045 0.18723 99.016 98.92 99.108 -0.028282 22 6 4 0 0 0 0.0031966 1 55000 55000 125.62 62.062 1 29486000 62097 2113 41475 42403 72293 72293 0.0845269925117691 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 991.559326171875 1 990.58701 989.579734 1.5606 0.0015459 -0.87275 -0.00086453 0.68788 0.00068141 990.5857446602491 100.83 0.22289 94.652 94.541 94.764 -6.1757 44 14 5 0 0 0 0.015445 1 67474 67474 68.081 28.123 1 1443500000 62098 2113 41475 42403 72294 72294 0.0845269925117691 SYIALPLTL 9 Unmodified _SYIALPLTL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.798828125 2 495.797143 989.579734 1.676 0.00083094 -0.2301 -0.00011409 1.4459 0.00071685 495.7967905409659 100.84 0.19213 94.661 94.541 94.734 -6.1757 41 12 5 0 0 0 0.0088975 1 67491 67491 104.8 41.236 1 852900000 62099 2113 41475 42403 72295 72295 0.0845269925117691 SYIASSLPLF 10 Unmodified _SYIASSLPLF_ 0 0 0 REV__nc|ENSG00000126903|P09131-2|SLC10A3 REV__nc|ENSG00000126903|P09131-2|SLC10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2979736328125 2 549.297507 1096.58046 0.49039 0.00026937 0.92352 0.00050729 1.4139 0.00077666 549.2978883758891 84.34 0.31064 83.84 83.666 83.976 -0.49962 36 13 4 0 0 0 0.50944 1 46203 46203 15.847 2.3393 1 1688300 + 62100 19567 41476 42404 72296 72296 0.03603493900232024 SYICQHCLVHL 11 2 Carbamidomethyl (C) _SYIC(Carbamidomethyl (C))QHC(Carbamidomethyl (C))LVHL_ SYIC(1)QHC(1)LVHL SYIC(100)QHC(100)LVHL 0 2 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 715.3409423828125 2 715.339389 1428.66423 0.60851 0.00043529 -0.18025 -0.00012894 0.42826 0.00030635 715.3394312755825 52.545 0.23952 46.81 46.635 46.874 -5.7345 28 12 3 0 0 0 2.8439E-06 1 33105 33105 100.09 80.729 1 39728000 62101 16141 41477 42405 72297 72297 1011;1012 -0.03296041266025895 SYICQHCLVHL 11 2 Carbamidomethyl (C) _SYIC(Carbamidomethyl (C))QHC(Carbamidomethyl (C))LVHL_ SYIC(1)QHC(1)LVHL SYIC(55)QHC(55)LVHL 0 2 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.5628051757812 3 477.228685 1428.66423 0.88794 0.00042375 -0.25777 -0.00012302 0.63017 0.00030074 477.22884124447756 52.526 0.39557 46.792 46.58 46.976 -5.7345 63 21 4 0 0 0 0.029988 1 33205 33205 55.235 51.118 1 171240000 62102 16141 41477 42405 72298 72298 1011;1012 -0.03296041266025895 SYIDLLQRF 9 Unmodified _SYIDLLQRF_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8151245117188 2 577.813856 1153.61316 0.59007 0.00034095 0.4992 0.00028844 1.0893 0.0006294 577.8139902374558 83.602 0.40621 83.104 82.837 83.243 -0.49751 43 16 3 0 0 0 0.0082661 1 45727 45727 92.491 52.542 1 4066500 62103 4019 41478 42406 72299 72299 0.04249701023104535 SYIDLLQRF 9 Unmodified _SYIDLLQRF_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8162841796875 2 577.813856 1153.61316 0.9537 0.00055106 1.1872 0.00068598 2.1409 0.001237 577.8143990237991 83 0.51352 83.062 82.869 83.382 0.062004 49 19 4 0 0 0 0.0004779 2 45862 45862;45962 144.35 75.245 1 54512000 62104 4019 41478 42406 72300;72301 72300 0.04249701023104535 SYIDLLQRF 9 Unmodified _SYIDLLQRF_ 0 0 0 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 ENSG00000127580|ENST00000293883|WDR24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8145751953125 2 577.813856 1153.61316 1.3547 0.00078278 0.25827 0.00014923 1.613 0.00093201 577.8140357547236 97.702 0.36406 91.526 91.384 91.749 -6.1757 58 23 4 0 0 0 0.0055767 3 64699 64699;64831;64839 115.69 59.515 1 197770000 62105 4019 41478 42406 72302;72303;72304 72302 0.04249701023104535 SYIDMDKELEF 11 Unmodified _SYIDMDKELEF_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 695.3151245117188 2 695.315768 1388.61698 -0.0060938 -4.2371E-06 0.71113 0.00049446 0.70504 0.00049022 695.3164503974299 69.58 0.18355 69.58 69.489 69.673 0 15 8 3 0 0 0 0.71036 1 38776 38776 3.2813 0 1 492140 62106 6489 41479 42407 72305 72305 -0.06178042056035338 SYIDRLISVF 10 Unmodified _SYIDRLISVF_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8334350585938 2 606.834788 1211.65502 1.2106 0.00073465 -1.1758 -0.00071351 0.034846 2.1146E-05 606.8340920680881 91.726 0.33125 91.762 91.614 91.945 0.036499 21 11 3 0 0 0 0.1028 1 51026 51026 46.022 14.754 1 6134400 62107 9805 41480 42408 72306 72306 0.05766256711604001 SYIDVLPEF 9 Unmodified _SYIDVLPEF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7741088867188 2 541.773865 1081.53318 0.22797 0.00012351 0.15143 8.204E-05 0.37939 0.00020555 541.7739812120874 92.586 0.39003 92.586 92.374 92.764 0 75 25 4 0 0 0 0.0082281 1 51201 51201 92.822 35.351 1 5604900 62108 2385 41481 42409 72307 72307 -0.004327853707536633 SYIDVLPEF 9 Unmodified _SYIDVLPEF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7740478515625 2 541.773865 1081.53318 NaN NaN NaN NaN NaN NaN NaN 93.064 1 92.607 92.107 93.107 -0.4574 0 0 0 0.01764 1 50863 50863 81.613 41.656 1 62109 2385 41481 42409 72308 72308 -0.004327853707536633 SYIDVLPEF 9 Unmodified _SYIDVLPEF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.77490234375 2 541.773865 1081.53318 NaN NaN NaN NaN NaN NaN NaN 93.242 1 92.785 92.285 93.285 -0.4574 0 0 0 0.17247 1 50959 50959 34.102 17.16 1 62110 2385 41481 42409 72309 72309 -0.004327853707536633 SYIDVLPEF 9 Unmodified _SYIDVLPEF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.774169921875 2 541.773865 1081.53318 0.14889 8.0666E-05 0.3806 0.0002062 0.52949 0.00028686 541.7740732661401 99.827 0.23959 93.652 93.541 93.78 -6.1757 59 17 4 0 0 0 0.0082281 1 66545 66545 92.822 44.476 1 662240000 62111 2385 41481 42409 72310 72310 -0.004327853707536633 SYIEHIFEI 9 Unmodified _SYIEHIFEI_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.793701171875 2 575.792589 1149.57063 0.36717 0.00021141 -0.50438 -0.00029042 -0.13722 -7.9009E-05 575.792225102596 77.976 1.0041 77.976 77.712 78.716 0 145 46 6 0 0 0 0.008678 4 43432 43234;43333;43432;43534 88.904 52.75 1 216290000 62112 6902 41482 42410 72311;72312;72313;72314 72313 0.0018230589485028759 SYIEHIFEI 9 Unmodified _SYIEHIFEI_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7940063476562 2 575.792589 1149.57063 -0.20625 -0.00011876 -0.65856 -0.00037919 -0.86481 -0.00049795 575.7921553147453 78.397 0.71461 77.911 77.657 78.372 -0.48596 147 30 6 0 0 0 0.0083938 4 42845 42845;42945;43043;43147 108 61.976 1 918390000 62113 6902 41482 42410 72315;72316;72317;72318 72315 0.0018230589485028759 SYIEHIFEI 9 Unmodified _SYIEHIFEI_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7904663085938 2 575.792589 1149.57063 0.94791 0.0005458 -1.536 -0.00088443 -0.58811 -0.00033863 575.7911367961827 79.391 0.43694 78.901 78.727 79.164 -0.48932 26 18 2 0 0 0 0.32871 1 43465 43465 15.847 9.124 1 1003000 62114 6902 41482 42410 72319 72319 0.0018230589485028759 SYIEHIFEI 9 Unmodified _SYIEHIFEI_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.79248046875 2 575.792589 1149.57063 0.37921 0.00021835 -0.66274 -0.0003816 -0.28353 -0.00016325 575.7921414145985 77.829 0.52385 77.882 77.678 78.202 0.052452 63 21 4 0 0 0 0.022193 2 43007 42900;43007 61.357 29.052 1 149320000 62115 6902 41482 42410 72320;72321 72321 0.0018230589485028759 SYIEHIFEI 9 Unmodified _SYIEHIFEI_ 0 0 0 ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15 ENSG00000162734|ENST00000360472|PEA15 ENSG00000162734|ENST00000360472|PEA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7919311523438 2 575.792589 1149.57063 1.2855 0.00074021 -1.2339 -0.00071046 0.051659 2.9745E-05 575.7916034738324 97.095 0.82217 90.919 90.491 91.313 -6.1757 200 47 6 0 0 0 0.010818 4 64203 64203;64327;64451;64585 78.149 56.403 1 4126899999.9999995 62116 6902 41482 42410 72322;72323;72324;72325 72322 0.0018230589485028759 SYIEYIGKR 9 Unmodified _SYIEYIGKR_ 0 0 0 REV__ENSG00000055130|ENST00000325222|CUL1 REV__ENSG00000055130|ENST00000325222|CUL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.3075561523438 2 564.806031 1127.59751 1.2105 0.00068371 1.9794 0.001118 3.1899 0.0018017 564.8078725725119 95.114 0.29448 88.938 88.693 88.988 -6.1757 25 15 2 0 0 0 0.11012 1 62850 62850 21.747 13.836 1 10860000 + 62117 17286 41483 42411 72326 72326 0.038814145060541705 SYIGGEEMLI 10 Unmodified _SYIGGEEMLI_ 0 0 0 REV__nc|ENSG00000180116|Q86WS4-2|REDIC1 REV__nc|ENSG00000180116|Q86WS4-2|REDIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.27197265625 2 556.270632 1110.52671 0.62901 0.0003499 0.2695 0.00014991 0.89851 0.00049982 556.2711006834284 66.547 0.67921 66.547 66.091 66.77 0 61 30 3 0 0 0 0.52888 1 37071 37071 14.838 0 1 4539700 + 62118 23141 41484 42412 72327 72327 -0.02413046593778745 SYIGLPLTL 9 Unmodified _SYIGLPLTL_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.5724487304688 1 976.57136 975.564084 0.6319 0.0006171 -0.67269 -0.00065693 -0.040783 -3.9828E-05 976.5705874737502 100.71 0.098 94.535 94.472 94.57 -6.1757 12 6 2 0 0 0 2.6046E-06 1 67395 67395 156.16 27.79 1 49617000 62119 5337 41485 42413 72328 72328 0.075324127341446 SYIGLPLTL 9 Unmodified _SYIGLPLTL_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7890625 2 488.789318 975.564084 0.85586 0.00041833 -1.0355 -0.00050615 -0.17965 -8.7812E-05 488.7891697020654 100.72 0.14012 94.541 94.459 94.599 -6.1757 13 9 2 0 0 0 0.019303 1 67450 67450 64.236 10.661 1 16954000 62120 5337 41485 42413 72329 72329 0.075324127341446 SYIHLMAHF 9 Unmodified _SYIHLMAHF_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 373.1983337402344 3 373.519905 1117.53789 1.7441 0.00065145 -0.93307 -0.00034852 0.81102 0.00030293 373.85403642448654 86.784 0.3521 80.609 80.379 80.731 -6.1757 28 18 3 0 0 0 0.18941 1 57172 57172 5.7319 0 1 6785300 62121 6094 41486 42414 72330 72330 -0.016181797089984684 SYIHYVFRL 9 Unmodified _SYIHYVFRL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.219482421875 3 399.885353 1196.63423 0.12514 5.0041E-05 -0.1493 -5.9704E-05 -0.024163 -9.6625E-06 399.8852693841715 62.41 0.33027 62.377 62.239 62.569 -0.032787 28 17 2 0 0 0 0.062454 1 34083 34083 41.956 25.39 1 27071000 62122 3233 41487 42415 72331 72331 0.0437771112262908 SYIHYVFRL 9 Unmodified _SYIHYVFRL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8859558105469 3 399.885353 1196.63423 1.2637 0.00050532 -0.19746 -7.8961E-05 1.0662 0.00042636 399.8852058229434 91.784 0.33772 85.608 85.435 85.773 -6.1757 50 18 3 0 0 0 0.20507 2 60638 60638;60762 22.658 10.483 1 62984000 62123 3233 41487 42415 72332;72333 72332 0.0437771112262908 SYIHYVFRL 9 Unmodified _SYIHYVFRL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3241577148438 2 599.324391 1196.63423 0.57112 0.00034228 -0.47901 -0.00028708 0.092104 5.52E-05 599.3242531331767 91.795 0.30495 85.62 85.452 85.757 -6.1757 26 16 2 0 0 0 0.044296 1 60651 60651 43.858 18.459 1 15370000 62124 3233 41487 42415 72334 72334 0.0437771112262908 SYIKQHQKT 9 Unmodified _SYIKQHQKT_ 0 0 0 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 REV__ENSG00000196652|ENST00000326775|ZKSCAN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2102355957031 3 378.208495 1131.60366 1.0501 0.00039716 0.12614 4.7707E-05 1.1762 0.00044487 378.54237695694275 56.745 0.57476 50.768 50.446 51.021 -5.9769 104 33 4 0 0 0 0.15471 2 36075 36075;36212 32.037 21.887 1 96739000 + 62125 23856 41488 42416 72335;72336 72335 0.043119327375507055 SYILDTLVF 9 Unmodified _SYILDTLVF_ 0 0 0 nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 nc|ENSG00000105576|O14787-2|TNPO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7926635742188 2 535.792058 1069.56956 1.1296 0.00060521 -0.72475 -0.00038832 0.40482 0.0002169 535.7913311814391 101.14 0.12507 94.965 94.907 95.032 -6.1757 16 7 3 0 0 0 0.038285 1 67813 67813 50.855 27.707 1 50883000 62126 2337 41489 42417 72337 72337 0.03756091525951888 SYILHMIHL 9 Oxidation (M) _SYILHM(Oxidation (M))IHL_ SYILHM(1)IHL SYILHM(46)IHL 0 0 1 ENSG00000158201|ENST00000289119|ABHD3;ENST00000577928.5_1_18:19263865-19284533:-|nuORF;ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5393981933594 3 381.539077 1141.5954 0.02255 8.6037E-06 -0.02128 -8.1191E-06 0.00127 4.8454E-07 381.5392424303799 54.618 0.29221 54.151 53.989 54.281 -0.46664 39 14 4 0 0 0 0.047196 1 29565 29565 46.021 26.764 1 6169000 62127 6572 41490 42418 72338 72338 1148 0.03026662496586141 SYILHMIHL 9 Oxidation (M) _SYILHM(Oxidation (M))IHL_ SYILHM(1)IHL SYILHM(71)IHL 0 0 1 ENSG00000158201|ENST00000289119|ABHD3;ENST00000577928.5_1_18:19263865-19284533:-|nuORF;ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.806884765625 2 571.804977 1141.5954 -0.0065332 -3.7357E-06 0.67491 0.00038592 0.66838 0.00038218 571.8056374036512 54.312 0.21783 54.245 54.101 54.319 -0.066936 23 10 3 0 0 0 0.013472 1 29469 29469 70.716 40.491 1 2878400 62128 6572 41490 42418 72339 72339 1148 0.03026662496586141 SYILHMIHL 9 Unmodified _SYILHMIHL_ 0 0 0 ENSG00000158201|ENST00000289119|ABHD3;ENST00000577928.5_1_18:19263865-19284533:-|nuORF;ENST00000578270.5_1_18:19244077-19283696:-|nuORF;ENST00000579875.5_1_18:19244061-19284599:-|nuORF;ENST00000579982.1_1_18:19282269-19284734:-|nuORF ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.208251953125 3 376.207438 1125.60049 1.7559 0.00066058 -0.6453 -0.00024277 1.1106 0.00041782 376.20723852145665 95.409 0.31123 89.234 89.12 89.431 -6.1757 34 17 3 0 0 0 0.06294 1 63161 63161 41.84 5.7126 1 36217000 62129 6572 41490 42419 72340 72340 0.042709663592177094 SYILQKSTF 9 Unmodified _SYILQKSTF_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant;BRCA2|p.N1784Kfs*3|1|0.2|ENSG00000139618|chr13:32339699-32339700|-/A|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7962036132812 2 543.795132 1085.57571 0.41853 0.0002276 0.82668 0.00044954 1.2452 0.00067714 543.7955086916741 46.943 0.15714 46.606 46.503 46.661 -0.33664 13 7 2 0 0 0 0.05483 1 25147 25147 43.772 16.144 1 2983100 62130 5169 41491 42420 72341 72341 0.036346097574551095 SYILQKSTF 9 Unmodified _SYILQKSTF_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant;BRCA2|p.N1784Kfs*3|1|0.2|ENSG00000139618|chr13:32339699-32339700|-/A|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 543.795132 1085.57571 1.3214 0.00071858 -1.1118 -0.00060459 0.20963 0.000114 544.2958002497816 46.671 0.18344 46.637 46.529 46.712 -0.033421 -0.033138 -0.0019464 NaN 43.772 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1101900 62131 5169 41491 42420 0.036346097574551095 SYILQKSTF 9 Unmodified _SYILQKSTF_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant;BRCA2|p.N1784Kfs*3|1|0.2|ENSG00000139618|chr13:32339699-32339700|-/A|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 543.795132 1085.57571 0.71744 0.00039014 6.7607 0.0036764 7.4782 0.0040666 543.8002340936184 52.502 0.057442 46.768 46.726 46.783 -5.7345 0.097401 0.0066156 NaN 43.772 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 15622000 62132 5169 41491 42420 0.036346097574551095 SYILRLEEI 9 Unmodified _SYILRLEEI_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-4|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.3228149414062 2 568.321514 1134.62847 0.28349 0.00016111 0.68712 0.0003905 0.97061 0.00055162 568.3220312851175 69.781 0.17081 69.781 69.692 69.863 0 12 7 2 0 0 0 0.11412 1 38884 38884 40.239 10.399 1 1246800 62133 6500 41492 42421 72342 72342 0.06654567820282864 SYILTHFIF 9 Unmodified _SYILTHFIF_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.80615234375 2 570.808042 1139.60153 0.65284 0.00037265 0.33042 0.0001886 0.98325 0.00056125 571.3094507831615 68.397 0.37037 67.917 67.66 68.031 -0.48071 45 16 4 0 0 0 0.2143 1 37309 37309 21.747 5.8995 1 5957400 62134 4279 41493 42422 72343 72343 0.03731503999733832 SYILYGALL 9 Unmodified _SYILYGALL_ 0 0 0 nc|ENSG00000071909|Q8WXR4-5|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;ENST00000602629.1_1_2:171055868-171092621:+|nuORF nc|ENSG00000071909|Q8WXR4-5|MYO3B nc|ENSG00000071909|Q8WXR4-5|MYO3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7936706542969 2 506.789318 1011.56408 4.4644 0.0022625 -2.9358 -0.0014878 1.5286 0.00077466 506.7865942781375 99.029 0.24501 99.001 98.863 99.108 -0.028282 29 8 6 0 0 0 0.18465 1 54990 54990 24.674 1.5255 1 6865600 62135 13364 41494 42423 72344 72344 0.058764127341419226 SYILYGALL 9 Unmodified _SYILYGALL_ 0 0 0 nc|ENSG00000071909|Q8WXR4-5|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;ENST00000602629.1_1_2:171055868-171092621:+|nuORF nc|ENSG00000071909|Q8WXR4-5|MYO3B nc|ENSG00000071909|Q8WXR4-5|MYO3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7881469726562 2 506.789318 1011.56408 1.5693 0.0007953 -4.2994 -0.0021789 -2.7302 -0.0013836 506.78668400355735 100.84 0.13332 94.661 94.584 94.717 -6.1757 16 8 2 0 0 0 0.027803 1 67517 67517 56.541 5.6862 1 49563000 62136 13364 41494 42423 72345 72345 0.058764127341419226 SYIMSCEEEL 10 Unmodified _SYIMSCEEEL_ 0 0 0 ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.8355407714844 3 401.835119 1202.48353 1.3184 0.00052979 -0.041093 -1.6513E-05 1.2773 0.00051328 401.8349074975364 97.089 0.3581 90.913 90.741 91.099 -6.1757 28 20 2 0 0 0 0.66569 1 64345 64345 9.544 3.7605 1 13198000 62137 1334 41495 42424 72346 72346 -0.10961604433373395 SYIMVEDEL 9 Unmodified _SYIMVEDEL_ 0 0 0 ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENST00000472216.2_1_2:169741394-169769722:-|nuORF ENST00000472216.2_1_2:169741394-169769722:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 549.75 2 549.754815 1097.49508 NaN NaN NaN NaN NaN NaN NaN 69.151 1 62.975 62.475 63.475 -6.1757 0 0 0 0.46757 1 45153 45153 16.942 5.302 1 62138 13900 41496 42425 72347 72347 -0.049770393477501784 SYINELRTF 9 Unmodified _SYINELRTF_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.78662109375 2 571.795663 1141.57677 0.44391 0.00025382 -3.8015 -0.0021737 -3.3576 -0.0019199 571.7947564425433 58.183 0.32855 57.693 57.45 57.779 -0.48974 19 15 2 0 0 0 0.16954 1 31586 31586 24.991 13.351 1 4620900 62139 2180 41497 42426 72348 72348 0.011648241263856107 SYINPDHLKYF 11 Unmodified _SYINPDHLKYF_ 0 0 0 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2350463867188 3 466.23471 1395.6823 0.40869 0.00019054 0.2136 9.9587E-05 0.62229 0.00029013 466.2346389954559 53.704 0.27477 53.253 53.087 53.362 -0.45173 25 13 3 0 0 0 0.37825 1 29071 29071 23.016 19.17 1 3604100 62140 1253 41498 42427 72349 72349 0.0002874025196888397 SYINPDHLKYF 11 Unmodified _SYINPDHLKYF_ 0 0 0 nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH nc|ENSG00000289720|Q96J02-3|ITCH nc|ENSG00000289720|Q96J02-3|ITCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2349548339844 3 466.23471 1395.6823 -0.068303 -3.1845E-05 0.50394 0.00023496 0.43564 0.00020311 466.23512369584364 53.377 0.32577 53.314 53.098 53.423 -0.063419 29 15 3 0 0 0 0.5229 1 28922 28922 12.228 9.1553 1 4312100 62141 1253 41498 42427 72350 72350 0.0002874025196888397 SYINYVITM 9 Oxidation (M) _SYINYVITM(Oxidation (M))_ SYINYVITM(1) SYINYVITM(92) 0 0 1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.27392578125 2 560.273175 1118.5318 0.83152 0.00046588 -2.7516 -0.0015417 -1.9201 -0.0010758 560.2711974869936 62.505 0.26797 62.018 61.915 62.183 -0.48764 21 12 2 0 0 0 0.0082661 1 34054 34054 92.491 52.534 1 4712700 62142 5608 41499 42428 72351 72351 1028 -0.022727427312020154 SYINYVITM 9 Oxidation (M) _SYINYVITM(Oxidation (M))_ SYINYVITM(1) SYINYVITM(52) 0 0 1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant;ENST00000478884.5_1_2:203881095-203927086:+|nuORF nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2723388671875 2 560.273175 1118.5318 0.73612 0.00041243 -1.3597 -0.0007618 -0.62357 -0.00034937 560.2722116966686 62.767 0.24309 62.281 62.162 62.405 -0.48617 18 11 2 0 0 0 0.03568 1 34207 34207 52.268 37.43 1 5861600 62143 5608 41499 42428 72352 72352 1028 -0.022727427312020154 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.303955078125 2 539.302593 1076.59063 3.3965 0.0018317 0.017524 9.4509E-06 3.414 0.0018412 539.3022255151616 99.573 0.34644 99.537 99.266 99.613 -0.036301 32 12 5 0 0 0 0.010818 1 55305 55305 78.149 0 1 18113000 62144 7418 41500 42429 72353 72353 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3035278320312 2 539.302593 1076.59063 1.9917 0.0010741 -1.1529 -0.00062175 0.83878 0.00045236 539.3023248312535 100.16 0.13741 100.13 100.05 100.18 -0.036301 11 4 4 0 0 0 0.070838 1 55638 55638 39.957 0 1 10984000 62145 7418 41500 42429 72354 72354 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3029174804688 2 539.302593 1076.59063 1.5006 0.00080929 0.23083 0.00012449 1.7315 0.00093378 539.3023936476394 100.9 0.17978 94.728 94.651 94.831 -6.1757 33 10 5 0 0 0 0.0090948 1 67582 67582 85.272 0 1 234540000 62146 7418 41500 42429 72355 72355 0.0554010162547911 SYIPLFPQL 9 Unmodified _SYIPLFPQL_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.302593 1076.59063 0.20053 0.00010814 0.88759 0.00047868 1.0881 0.00058683 539.3028610058825 99.677 0.14601 99.519 99.437 99.583 -0.1575 -0.0085794 0.00046655 NaN 78.149 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 772390 62147 7418 41500 42429 0.0554010162547911 SYIPLFPQLYF 11 Unmodified _SYIPLFPQLYF_ 0 0 0 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 ENSG00000165996|ENST00000361271|HACD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 694.8705444335938 2 694.368464 1386.72238 0.31287 0.00021725 0.59961 0.00041635 0.91248 0.0006336 694.8703205495513 102.04 0.11791 95.865 95.78 95.898 -6.1757 9 5 2 0 0 0 0.13715 1 68510 68510 38.176 0 1 8513400 62148 7418 41501 42430 72356 72356 0.044482869225703325 SYIPSTVFF 9 Unmodified _SYIPSTVFF_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7711791992188 2 530.771126 1059.5277 0.36607 0.0001943 0.61507 0.00032646 0.98114 0.00052076 530.7715371241766 91.06 0.35123 90.565 90.429 90.78 -0.49458 32 16 3 0 0 0 0.39863 1 49763 49763 12.532 1.7076 1 1047000 62149 5272 41502 42431 72357 72357 0.00031535837410956447 SYIPSTVFF 9 Unmodified _SYIPSTVFF_ 0 0 0 ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B ENSG00000140830|ENST00000268483|TXNL4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7719116210938 2 530.771126 1059.5277 0.59614 0.00031641 0.72383 0.00038419 1.32 0.0007006 530.7713973578944 90.509 0.33945 90.551 90.358 90.697 0.042183 26 11 3 0 0 0 0.14602 1 50352 50352 28.487 3.0875 1 6232200 62150 5272 41502 42431 72358 72358 0.00031535837410956447 SYIPYNPQQF 10 Unmodified _SYIPYNPQQF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2769165039062 2 628.800946 1255.58734 0.26849 0.00016882 3.0307 0.0019057 3.2992 0.0020745 628.8024892240819 64.782 0.25854 64.296 64.189 64.447 -0.48512 18 11 2 0 0 0 0.22811 1 35379 35379 14.838 8.6325 1 1175600 62151 7770 41503 42432 72359 72359 -0.03023193219200948 SYIQQINNL 9 Unmodified _SYIQQINNL_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2891235351562 2 546.787838 1091.56112 0.5724 0.00031298 -1.5005 -0.00082048 -0.92814 -0.0005075 546.787158294869 57.545 0.3284 57.545 57.371 57.699 0 25 15 2 0 0 0 0.171 2 32054 31980;32054 34.402 21.87 1 7025400 62152 2565 41504 42433 72360;72361 72361 0.01900537609321873 SYIQQINNL 9 Unmodified _SYIQQINNL_ 0 0 0 nc|ENSG00000108395|O94972-2|TRIM37;nc|ENSG00000108395|O94972-3|TRIM37;ENSG00000108395|ENST00000262294|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 nc|ENSG00000108395|O94972-2|TRIM37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7872924804688 2 546.787838 1091.56112 0.14546 7.9533E-05 -2.4606 -0.0013454 -2.3152 -0.0012659 546.786259306563 58.159 0.26625 57.669 57.533 57.8 -0.48974 20 12 2 0 0 0 0.15882 1 31603 31603 36.127 20.28 1 4820400 62153 2565 41504 42433 72362 72362 0.01900537609321873 SYIQRLVQI 9 Unmodified _SYIQRLVQI_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3302612304688 2 560.329673 1118.64479 0.70543 0.00039527 -0.22129 -0.00012399 0.48414 0.00027128 560.3295160609406 63.94 0.31455 63.455 63.319 63.634 -0.48512 39 17 3 0 0 0 0.012668 2 34833 34833;34943 72.968 41.057 1 14328000 62154 1951 41505 42434 72363;72364 72363 0.09021693777026485 SYIQRLVQI 9 Unmodified _SYIQRLVQI_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3296508789062 2 560.329673 1118.64479 1.0374 0.00058127 -0.13414 -7.5165E-05 0.90323 0.0005061 560.329517153214 63.49 0.49389 63.469 63.278 63.772 -0.021614 66 23 4 0 0 0 0.0087873 2 34675 34675;34782 103.35 67.226 1 182710000 62155 1951 41505 42434 72365;72366 72365 0.09021693777026485 SYIQRLVQI 9 Unmodified _SYIQRLVQI_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3296508789062 2 560.329673 1118.64479 0.86963 0.00048728 -0.10406 -5.831E-05 0.76557 0.00042897 560.3296130019365 82.749 1.8253 76.574 75.462 77.287 -6.1757 275 101 3 0 0 0 0.0082475 10 53912 53654;53780;53912;54039;54165;54297;54433;54565;54700;54835 99.755 58.758 1 169240000 62156 1951 41505 42434 72367;72368;72369;72370;72371;72372;72373;72374;72375;72376 72369 0.09021693777026485 SYIRCYYF 8 Unmodified _SYIRCYYF_ 0 0 0 nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7551879882812 2 557.754953 1113.49535 0.42472 0.00023689 -2.1488 -0.0011985 -1.7241 -0.0009616 557.7536509123458 81.365 0.36966 81.365 81.121 81.491 0 26 16 2 0 0 0 0.80624 1 45102 45102 2.8892 0.58649 1 461990 62157 1035 41506 42435 72377 72377 -0.056855748372299786 SYIRCYYF 8 Unmodified _SYIRCYYF_ 0 0 0 nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 nc|ENSG00000070729|Q14028-4|CNGB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.754953 1113.49535 0.89445 0.00049888 -4.5333 -0.0025285 -3.6389 -0.0020296 557.7520887978436 81.852 0.41843 81.357 81.139 81.557 -0.4952 -0.0041259 -0.0018528 NaN 2.8892 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 791230 62158 1035 41506 42435 -0.056855748372299786 SYIRPEDIVNF 11 Unmodified _SYIRPEDIVNF_ 0 0 0 ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A;nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A ENST00000463015.1_1_1:202977868-202984294:+|nuORF ENST00000463015.1_1_1:202977868-202984294:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.844970703125 2 676.845884 1351.67722 0.31757 0.00021495 -0.60386 -0.00040872 -0.28629 -0.00019378 676.8446962253088 68.678 0.21236 68.197 68.096 68.309 -0.48071 20 9 3 0 0 0 0.27261 1 37539 37539 28.234 13.828 1 5451900 62159 6993 41507 42436 72378 72378 0.015444363893493573 SYIRPEDIVNF 11 Unmodified _SYIRPEDIVNF_ 0 0 0 ENST00000463015.1_1_1:202977868-202984294:+|nuORF;nc|ENSG00000163444|Q8IXX5-2|TMEM183A;nc|ENSG00000224831|Q1AE95|TMEM183BP;ENSG00000163444|ENST00000367242|TMEM183A ENST00000463015.1_1_1:202977868-202984294:+|nuORF ENST00000463015.1_1_1:202977868-202984294:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.8471069335938 2 676.845884 1351.67722 0.79284 0.00053663 -0.075463 -5.1077E-05 0.71738 0.00048556 676.8458834887256 80.375 0.63793 74.2 74.004 74.642 -6.1757 54 35 2 0 0 0 0.0039716 2 52759 52627;52759 77.049 53.259 1 14620000 62160 6993 41507 42436 72379;72380 72380 0.015444363893493573 SYISISYTL 9 Unmodified _SYISISYTL_ 0 0 0 REV__ENSG00000181804|ENST00000316549|SLC9A9 REV__ENSG00000181804|ENST00000316549|SLC9A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7735595703125 2 523.773865 1045.53318 0.4607 0.0002413 -2.0202 -0.0010581 -1.5595 -0.00081682 523.7728574241535 80.179 0.22665 80.179 80.089 80.316 0 16 10 2 0 0 0 0.16226 1 44533 44533 26.884 6.43 1 385590 + 62161 23224 41508 42437 72381 72381 0.012232146292262769 SYISKVDVL 9 Unmodified _SYISKVDVL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2908325195312 2 512.289682 1022.56481 0.20383 0.00010442 -0.93541 -0.0004792 -0.73158 -0.00037478 512.2889803431397 52.518 0.39726 52.518 52.353 52.75 0 37 17 3 0 0 0 0.069655 1 29024 29024 40.239 16.219 1 8064800 62162 1070 41509 42438 72382 72382 0.05443207383189019 SYISKVDVL 9 Unmodified _SYISKVDVL_ 0 0 0 nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF nc|ENSG00000072121|Q68DK2-5|ZFYVE26 nc|ENSG00000072121|Q68DK2-5|ZFYVE26 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.289682 1022.56481 0.19031 9.7495E-05 -0.35988 -0.00018436 -0.16956 -8.6865E-05 512.2890935850528 52.957 0.19387 52.505 52.419 52.613 -0.45173 -0.0063689 0.00047823 NaN 40.239 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1535500 62163 1070 41509 42438 0.05443207383189019 SYISRTNQL 9 Unmodified _SYISRTNQL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2858276367188 2 541.285463 1080.55637 -0.00094657 -5.1237E-07 -0.0029577 -1.6009E-06 -0.0039042 -2.1133E-06 541.285456592776 31.04 0.32202 31.04 30.912 31.234 0 51 15 5 0 0 0 0.0088668 2 16124 16124;16223 87.258 39.664 1 52139000 62164 6247 41510 42439 72383;72384 72383 0.01931653466544958 SYISRTNQL 9 Unmodified _SYISRTNQL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.28515625 2 541.285463 1080.55637 0.16683 9.03E-05 0.39917 0.00021606 0.56599 0.00030636 541.2856828795127 31.058 0.26473 30.955 30.815 31.08 -0.10269 26 10 3 0 0 0 0.0093064 1 16113 16113 83.429 39.57 1 8068500 62165 6247 41510 42439 72385 72385 0.01931653466544958 SYISRTNQL 9 Unmodified _SYISRTNQL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2860107421875 2 541.285463 1080.55637 -0.14208 -7.6908E-05 0.78959 0.00042739 0.64751 0.00035049 541.2859508968343 30.855 0.2112 30.885 30.759 30.97 0.030106 15 8 2 0 0 0 0.013609 1 16142 16142 70.332 33.826 1 2190800 62166 6247 41510 42439 72386 72386 0.01931653466544958 SYISRTNQL 9 Unmodified _SYISRTNQL_ 0 0 0 ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;AHCTF1|p.L1290Pfs*5|1|0.14|ENSG00000153207|chr1:246861191-246861192|-/A|frameshift_variant ENSG00000153207|ENST00000648844|AHCTF1 ENSG00000153207|ENST00000648844|AHCTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2855224609375 2 541.285463 1080.55637 0.49834 0.00026974 -0.1604 -8.682E-05 0.33794 0.00018292 541.2854082336983 35.326 0.49982 31.231 30.991 31.491 -4.0951 93 30 4 0 0 0 0.0087224 3 20366 20366;20489;20619 107.1 49.378 1 309620000 62167 6247 41510 42439 72387;72388;72389 72387 0.01931653466544958 SYITEECLKKL 11 Carbamidomethyl (C) _SYITEEC(Carbamidomethyl (C))LKKL_ SYITEEC(1)LKKL SYITEEC(140)LKKL 0 1 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.3630981445312 2 692.363053 1382.71155 0.65226 0.0004516 -0.0031232 -2.1624E-06 0.64914 0.00044944 692.3630607725092 50.484 0.37475 44.945 44.71 45.085 -5.5391 73 23 4 0 0 0 2.4991E-15 2 31556 31556;31698 139.38 99.139 1 81536000 62168 402 41511 42440 72390;72391 72390 21 0.03550516485938715 SYITEECLKKL 11 Carbamidomethyl (C) _SYITEEC(Carbamidomethyl (C))LKKL_ SYITEEC(1)LKKL SYITEEC(41)LKKL 0 1 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.91162109375 3 461.911127 1382.71155 1.0908 0.00050388 -0.043306 -2.0004E-05 1.0475 0.00048387 461.9111497248597 50.478 0.47266 44.939 44.663 45.136 -5.5391 101 29 5 0 0 0 0.11523 1 31639 31639 40.714 20.727 1 253930000 62169 402 41511 42440 72392 72392 21 0.03550516485938715 SYITKFSQL 9 Unmodified _SYITKFSQL_ 0 0 0 REV__nc|ENSG00000152990|Q8IWK6-2|ADGRA3 REV__nc|ENSG00000152990|Q8IWK6-2|ADGRA3 MSMS AL20221201_MKP_PDAC_01 4 543.7900390625 2 543.795132 1085.57571 NaN NaN NaN NaN NaN NaN NaN 92.367 1 86.191 85.691 86.691 -6.1757 0 0 0 0.56093 1 61081 61081 13.906 0.39817 1 + 62170 29712 41512 42441 72393 72393 0.03634609757477847 SYITKPEKW 9 Unmodified _SYITKPEKW_ 0 0 0 ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5413818359375 3 384.541363 1150.60226 -0.24149 -9.2863E-05 0.44425 0.00017083 0.20276 7.7969E-05 384.54162394541726 33.334 0.23889 33.175 32.984 33.223 -0.15918 14 9 2 0 0 0 0.47846 1 17373 17373 8.9762 6.4778 1 1633600 62171 8224 41513 42442 72394 72394 0.03298298648792297 SYITKPEKW 9 Unmodified _SYITKPEKW_ 0 0 0 ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8760070800781 3 384.541363 1150.60226 1.6296 0.00062666 -1.0017 -0.0003852 0.62793 0.00024147 384.54082527971906 37.199 0.40055 32.916 32.719 33.12 -4.2835 54 24 3 0 0 0 0.047788 2 21897 21771;21897 35.612 27.667 1 19507000 62172 8224 41513 42442 72395;72396 72396 0.03298298648792297 SYITKPEKW 9 Unmodified _SYITKPEKW_ 0 0 0 ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA ENSG00000172469|ENST00000358812|MANEA MSMS AL20221201_MKP_PDAC_01 4 576.3089599609375 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 37.157 1 32.873 32.373 33.373 -4.2835 0 0 0 0.083147 1 21783 21783 47.732 24.996 1 62173 8224 41513 42442 72397 72397 0.03298298648792297 SYIVAKFEM 9 Oxidation (M) _SYIVAKFEM(Oxidation (M))_ SYIVAKFEM(1) SYIVAKFEM(57) 0 0 1 REV__ENSG00000214415|ENST00000398291|GNAT3 REV__ENSG00000214415|ENST00000398291|GNAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2755126953125 2 552.275718 1102.53688 1.1848 0.00065433 -2.0532 -0.001134 -0.86846 -0.00047963 552.7756920906211 89.254 0.65519 83.079 82.763 83.418 -6.1757 54 36 2 0 0 0 0.026094 1 59023 59023 57.471 9.1255 1 15472000 + 62174 24312 41514 42443 72398 72398 1856 -0.01028438868570447 SYIVEKRDL 9 Unmodified _SYIVEKRDL_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8765258789062 3 374.876634 1121.60807 -0.42542 -0.00015948 -0.13673 -5.1257E-05 -0.56215 -0.00021074 374.87659005973865 24.882 0.22395 24.882 24.739 24.963 0 23 16 2 0 0 0 0.42 1 12703 12703 11.518 1.2026 1 3538700 62175 6400 41515 42444 72399 72399 0.05213397160468958 SYIYPHHPE 9 Unmodified _SYIYPHHPE_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.8714294433594 3 381.513696 1141.51926 1.5331 0.00058488 -0.30456 -0.0001162 1.2285 0.00046869 381.8481423609733 50.497 0.31055 44.958 44.725 45.036 -5.5391 26 19 2 0 0 0 0.209 1 31580 31580 4.5289 2.0304 1 11930000 + 62176 23101 41516 42445 72400 72400 -0.045840180791856255 SYKADLNSNL 10 Unmodified _SYKADLNSNL_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7838134765625 2 562.782753 1123.55095 NaN NaN NaN NaN NaN NaN NaN 26.682 1 26.682 26.182 27.182 0 0 0 0 0.85122 1 13726 13726 10.074 0 1 + 62177 22259 41517 42446 72401 72401 -0.005880701158957891 SYKCCCQPPL 10 Unmodified _SYKCCCQPPL_ 0 0 0 REV__ENST00000405785.5_1_7:7606553-7607680:+|nuORF REV__ENST00000405785.5_1_7:7606553-7607680:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2453002929688 2 571.24558 1140.47661 0.63987 0.00036552 -0.58603 -0.00033477 0.053839 3.0755E-05 571.2449226035105 86.943 0.2157 86.44 86.37 86.586 -0.50318 15 8 2 0 0 0 0.6606 1 47567 47567 7.2892 1.5288 1 364310 + 62178 26651 41518 42447 72402 72402 -0.0880119579494476 SYKCKKSKW 9 Unmodified _SYKCKKSKW_ 0 0 0 REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF REV__ENST00000525244.5_1_11:85956313-85988207:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 386.544677734375 3 386.54271 1156.6063 NaN NaN NaN NaN NaN NaN NaN 76.005 1 69.829 69.329 70.329 -6.1757 0 0 0 0.46232 1 49719 49719 12.175 2.0242 1 + 62179 17548 41519 42448 72403 72403 0.03426064870859591 SYKELDIQI 9 Unmodified _SYKELDIQI_ 0 0 0 REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2015380859375 3 370.201007 1107.58119 -0.27786 -0.00010286 0.040039 1.4823E-05 -0.23782 -8.8042E-05 370.20127695854256 31.868 0.23748 31.898 31.732 31.969 0.030104 17 10 2 0 0 0 0.34999 1 16701 16701 10.151 0 1 1651200 + 62180 18354 41520 42449 72404 72404 0.0317028854929049 SYKELDIQI 9 Unmodified _SYKELDIQI_ 0 0 0 REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 370.201007 1107.58119 -0.27786 -0.00010286 0.040039 1.4823E-05 -0.23782 -8.8042E-05 370.20127695854256 31.868 0.23748 31.898 31.732 31.969 0.030104 0 0 NaN 10.151 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1651200 + 62181 18354 41520 42449 0.0317028854929049 SYKGILNLL 9 Unmodified _SYKGILNLL_ 0 0 0 REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23 REV__nc|ENSG00000137266|A1A5C7-3|SLC22A23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.8069763183594 2 510.808042 1019.60153 0.18307 9.3514E-05 -0.82412 -0.00042097 -0.64105 -0.00032745 510.8074871093731 67.168 0.36203 66.685 66.482 66.844 -0.48218 28 16 2 0 0 0 0.014417 1 36677 36677 69.105 0 1 5542000 + 62182 20229 41521 42450 72405 72405 0.09251503999746546 SYKKCLSDI 9 Unmodified _SYKKCLSDI_ 0 0 0 REV__ENSG00000178222|ENST00000433731|RNF212 REV__ENSG00000178222|ENST00000433731|RNF212 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8517761230469 3 352.85132 1055.53213 1.4647 0.00051683 0.78739 0.00027783 2.2521 0.00079466 352.8513640114935 18.644 0.16517 16.023 15.896 16.061 -2.6215 20 16 2 0 0 0 0.55775 1 9814 9814 2.2828 0 1 1111900 + 62183 23029 41522 42451 72406 72406 0.00658676988678053 SYKLVTVKF 9 Unmodified _SYKLVTVKF_ 0 0 0 nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000578527.1_1_17:65549676-65688690:+|nuORF nc|ENSG00000154217|Q9UKF7-2|PITPNC1 nc|ENSG00000154217|Q9UKF7-2|PITPNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2193298339844 3 362.21822 1083.63283 0.80691 0.00029228 1.11 0.00040205 1.9169 0.00069432 362.21884389451395 50.581 0.28032 50.527 50.408 50.688 -0.053871 31 13 3 0 0 0 0.18255 1 27341 27341 24.882 12.707 1 5965200 62184 6305 41523 42452 72407 72407 0.09436077033842594 SYKLVTVKF 9 Unmodified _SYKLVTVKF_ 0 0 0 nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000578527.1_1_17:65549676-65688690:+|nuORF nc|ENSG00000154217|Q9UKF7-2|PITPNC1 nc|ENSG00000154217|Q9UKF7-2|PITPNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.826171875 2 542.823692 1083.63283 NaN NaN NaN NaN NaN NaN NaN 50.651 1 50.597 50.097 51.097 -0.053871 0 0 0 0.18257 1 27394 27394 34.932 16.786 1 62185 6305 41523 42452 72408 72408 0.09436077033842594 SYKNGFLNL 9 Unmodified _SYKNGFLNL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2801513671875 2 528.279649 1054.54475 0.16145 8.529E-05 0.36676 0.00019375 0.52821 0.00027904 528.2798445868593 59.855 0.29469 59.364 59.214 59.509 -0.49079 36 14 3 0 0 0 0.047196 1 32575 32575 46.021 17.534 1 13744000 62186 4284 41524 42453 72409 72409 0.0196545644323578 SYKNGFLNL 9 Unmodified _SYKNGFLNL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2796020507812 2 528.279649 1054.54475 0.26483 0.00013991 -0.19115 -0.00010098 0.073683 3.8925E-05 528.279502823549 59.588 0.34332 59.535 59.312 59.655 -0.053062 39 17 3 0 0 0 0.039985 1 32435 32435 49.933 15.831 1 17060000 62187 4284 41524 42453 72410 72410 0.0196545644323578 SYKNGFLNL 9 Unmodified _SYKNGFLNL_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2807006835938 2 528.279649 1054.54475 0.88087 0.00046535 0.44141 0.00023319 1.3223 0.00069854 528.2795008037368 64.937 0.54677 58.761 58.525 59.072 -6.1757 63 30 3 0 0 0 0.017075 2 42212 42080;42212 66.457 32.348 1 63211000 62188 4284 41524 42453 72411;72412 72412 0.0196545644323578 SYKPIFSTL 9 Unmodified _SYKPIFSTL_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2931518554688 2 528.292225 1054.5699 0.24276 0.00012825 0.70492 0.00037241 0.94769 0.00050066 528.29265427347 61.829 0.22529 61.341 61.222 61.448 -0.48764 18 10 2 0 0 0 0.21643 1 33669 33669 21.537 2.28 1 1915300 62189 3477 41525 42454 72413 72413 0.04479511245813228 SYKPIFSTL 9 Unmodified _SYKPIFSTL_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.292724609375 2 528.292225 1054.5699 0.26703 0.00014107 -2.0221 -0.0010682 -1.755 -0.00092717 528.2902636957033 61.46 0.33599 61.427 61.293 61.629 -0.032787 29 16 3 0 0 0 0.029718 1 33512 33512 55.503 27.016 1 6363600 62190 3477 41525 42454 72414 72414 0.04479511245813228 SYKPIFSTL 9 Unmodified _SYKPIFSTL_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2921752929688 2 528.292225 1054.5699 0.4892 0.00025844 0.71684 0.0003787 1.206 0.00063714 528.2925306489312 66.732 0.36617 60.556 60.332 60.698 -6.1757 28 20 2 0 0 0 0.078314 1 43398 43398 38.176 5.8701 1 15599000 62191 3477 41525 42454 72415 72415 0.04479511245813228 SYKRSNFYI 9 Unmodified _SYKRSNFYI_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2050476074219 3 393.204862 1176.59276 NaN NaN NaN NaN NaN NaN NaN 36.158 1 36.183 35.683 36.683 0.024967 0 0 0 0.43483 1 19147 19147 12.873 3.3286 1 62192 1487;1286 41526 42455 72416 72416 0.011525303632879513 SYKVKNSDIFW 11 Unmodified _SYKVKNSDIFW_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.905517578125 3 462.906594 1385.69795 0.53545 0.00024786 -2.6298 -0.0012174 -2.0944 -0.0009695 462.9054204045647 32.827 0.17151 28.971 28.872 29.044 -3.8562 13 9 2 0 0 0 0.69628 1 18738 18738 4.6037 0.48712 1 8780100 + 62193 22894 41527 42456 72417 72417 0.020530267690446635 SYKVSTSGP 9 Unmodified _SYKVSTSGP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2355651855469 2 463.234907 924.455261 0.13252 6.1389E-05 -0.52502 -0.00024321 -0.3925 -0.00018182 463.23476120006006 20.883 0.27375 20.883 20.744 21.017 0 104 47 3 0 0 0 0.10247 1 10481 10481 32.786 21.962 1 6071200 + 62194 165 41528 42457 72418 72418 -0.009987982361394643 SYKVSTSGP 9 Unmodified _SYKVSTSGP_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2356872558594 2 463.234907 924.455261 0.20468 9.4817E-05 0.86461 0.00040052 1.0693 0.00049533 463.23519165743625 23.923 0.28267 21.096 20.966 21.248 -2.8273 21 16 2 0 0 0 0.08907 1 12969 12969 35.612 17.466 1 2734100 + 62195 165 41528 42457 72419 72419 -0.009987982361394643 SYKVSTSGPR 10 Unmodified _SYKVSTSGPR_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.1935119628906 3 361.192734 1080.55637 1.1925 0.00043072 1.8334 0.00066222 3.0259 0.0010929 361.19326259231013 17.752 0.081459 15.165 15.144 15.225 -2.5866 11 8 2 0 0 0 0.41822 1 9312 9312 14.171 10.584 1 2729900 + 62196 165 41529 42458 72420 72420 0.019316534665676954 SYKVVFNLLA 10 Unmodified _SYKVVFNLLA_ 0 0 0 REV__ENSG00000152952|ENST00000282903|PLOD2 REV__ENSG00000152952|ENST00000282903|PLOD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3341674804688 2 577.334424 1152.6543 NaN NaN NaN NaN NaN NaN NaN 70.36 1 70.395 69.895 70.895 0.035515 0 0 0 0.88176 1 38725 38725 8.7454 2.0222 1 + 62197 21143 41530 42459 72421 72421 0.08407462062564264 SYLAKSSSCNI 11 Unmodified _SYLAKSSSCNI_ 0 0 0 REV__nc|ENSG00000259092|A0A087WSZ9|TRAV30 REV__nc|ENSG00000259092|A0A087WSZ9|TRAV30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7835693359375 2 586.784438 1171.55432 NaN NaN NaN NaN NaN NaN NaN 78.361 1 77.875 77.375 78.375 -0.48596 0 0 0 0.75116 1 42918 42918 14.405 1.3629 1 + 62198 29989 41531 42460 72422 72422 -0.02459143333544489 SYLAYWKS 8 Unmodified _SYLAYWKS_ 0 0 0 nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF nc|ENSG00000156650|Q8WYB5-3|KAT6B nc|ENSG00000156650|Q8WYB5-3|KAT6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2559509277344 2 509.255643 1016.49673 0.081002 4.1251E-05 0.40979 0.00020869 0.49079 0.00024994 509.2556975329809 63.285 0.26162 62.798 62.665 62.927 -0.48617 25 11 3 0 0 0 0.79783 1 34489 34489 7.9102 1.187 1 1685700 62199 6472 41532 42461 72423 72423 -0.010856174768150595 SYLCNVTLF 9 Carbamidomethyl (C) _SYLC(Carbamidomethyl (C))NVTLF_ SYLC(1)NVTLF SYLC(50)NVTLF 0 1 0 ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7711181640625 2 558.773342 1115.53213 1.2068 0.00067435 -0.95285 -0.00053243 0.25399 0.00014192 558.7725319293891 82.817 0.38491 82.879 82.664 83.049 0.062004 44 14 4 0 0 0 0.039985 1 45790 45790 49.933 21.446 1 14750000 62200 6369 41533 42462 72424 72424 627 -0.021013230113112513 SYLCNVTLF 9 Carbamidomethyl (C) _SYLC(Carbamidomethyl (C))NVTLF_ SYLC(1)NVTLF SYLC(63)NVTLF 0 1 0 ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7743530273438 2 558.773342 1115.53213 1.1782 0.00065836 -0.6561 -0.00036661 0.52212 0.00029175 558.7731382906359 92.157 1.1004 85.981 85.49 86.59 -6.1757 190 65 4 0 0 0 0.020973 4 61258 60882;61003;61131;61258 62.573 42.242 1 217740000 62201 6369 41533 42462 72425;72426;72427;72428 72428 627 -0.021013230113112513 SYLDDEDTEP 10 Unmodified _SYLDDEDTEP_ 0 0 0 REV__nc|ENSG00000032742|Q13099-3|IFT88 REV__nc|ENSG00000032742|Q13099-3|IFT88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.234375 2 592.235498 1182.45644 0.6596 0.00039064 -1.8753 -0.0011106 -1.2157 -0.00071997 592.2349585278483 75.703 0.31555 75.225 75.011 75.327 -0.47714 21 14 2 0 0 0 0.52888 1 41474 41474 14.838 3.198 1 722260 + 62202 17150 41534 42463 72429 72429 -0.12748673448572845 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.255126953125 2 532.808574 1063.60259 0.36976 0.00019701 0.84955 0.00045265 1.2193 0.00064966 532.8091066888996 46.778 0.17984 46.778 46.678 46.858 0 12 8 2 0 0 0 0.18482 1 25586 25586 18.146 4.6385 1 2235900 + 62203 169;167;173;135;157 41535 42464 72430 72430 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8101806640625 2 532.808574 1063.60259 0.6044 0.00032203 0.79269 0.00042235 1.3971 0.00074438 532.8086663565512 47.035 0.23166 46.698 46.582 46.814 -0.33664 21 11 2 0 0 0 0.0094097 1 25180 25180 82.529 17.294 1 10387000 + 62204 169;167;173;135;157 41535 42464 72431 72431 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.5415649414062 3 355.541475 1063.60259 0.63283 0.000225 -0.075916 -2.6991E-05 0.55691 0.00019801 355.54138510680565 47.019 0.28851 46.682 46.544 46.833 -0.33664 39 14 4 0 0 0 0.08691 1 25198 25198 33.445 11.855 1 22938000 + 62205 169;167;173;135;157 41535 42464 72432 72432 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8104248046875 2 532.808574 1063.60259 1.3662 0.00072794 0.098805 5.2644E-05 1.465 0.00078058 532.8085042935534 46.748 0.21785 46.714 46.596 46.814 -0.033421 16 10 2 0 0 0 0.013041 1 25164 25164 71.922 13.243 1 2876800 + 62206 169;167;173;135;157 41535 42464 72433 72433 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.5416564941406 3 355.541475 1063.60259 1.2508 0.0004447 -0.28629 -0.00010179 0.96448 0.00034291 355.54134042644085 46.733 0.21785 46.7 46.596 46.814 -0.033417 24 10 3 0 0 0 0.20428 1 25172 25172 21.59 13.146 1 6779700 + 62207 169;167;173;135;157 41535 42464 72434 72434 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.5419006347656 3 355.541475 1063.60259 1.5622 0.00055542 1.5052 0.00053515 3.0673 0.0010906 355.5414047822953 52.538 0.37239 46.804 46.635 47.007 -5.7345 50 20 4 0 0 0 0.018301 2 33118 33118;33229 51.415 11.944 1 92195000 + 62208 169;167;173;135;157 41535 42464 72435;72436 72435 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8098754882812 2 532.808574 1063.60259 0.82114 0.00043751 2.3932 0.0012751 3.2143 0.0017126 532.8088256612582 52.532 0.29033 46.798 46.635 46.925 -5.7345 38 15 3 0 0 0 0.020973 1 33130 33130 62.573 12.64 1 40182000 + 62209 169;167;173;135;157 41535 42464 72437 72437 0.07333718368658992 SYLDKVRAL 9 Unmodified _SYLDKVRAL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;CON__Q99456;ENSG00000187242|ENST00000251643|KRT12;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENST00000399211.7_1_17:16744211-16749072:-|nuORF;KRT12|p.I183Tfs*3|1|0.03|ENSG00000187242|chr17:40866641-40866642|-/AGTG|frameshift_variant;KRT19|p.A103V|1|0.16|ENSG00000171345|chr17:41527940-41527940|G/A|missense_variant;ENSG00000186395|ENST00000269576|KRT10;CON__P13645;CON__P19001;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;CON__P02533;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000588319.1_1_17:39768340-39768940:-|nuORF ENSG00000171345|ENST00000361566|KRT19;ENSG00000186395|ENST00000269576|KRT10;CON__P19001;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14 ENSG00000186395|ENST00000269576|KRT10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 355.541475 1063.60259 0.13974 4.9684E-05 -0.081676 -2.9039E-05 0.058066 2.0645E-05 355.5415701291486 46.769 0.22315 46.769 46.656 46.879 0 0.029992 -4.411E-05 NaN 51.415 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 6335600 + 62210 169;167;173;135;157 41535 42464 0.07333718368658992 SYLDLTGGMSR 11 Unmodified _SYLDLTGGMSR_ 0 0 0 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 REV__nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2899780273438 2 600.289888 1198.56522 0.40297 0.0002419 -1.0881 -0.0006532 -0.68517 -0.0004113 600.2894241294463 50.971 0.32471 50.558 50.394 50.718 -0.41351 32 15 3 0 0 0 0.15156 1 27453 27453 36.506 0.37917 1 3496300 + 62211 17782 41536 42465 72438 72438 -0.026117409592643526 SYLDNFIKI 9 Unmodified _SYLDNFIKI_ 0 0 0 nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4 nc|ENSG00000130669|O96013-2|PAK4 nc|ENSG00000130669|O96013-2|PAK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8045043945312 2 556.802957 1111.59136 0.90865 0.00050594 0.398 0.00022161 1.3067 0.00072755 556.8030144374665 81.749 0.6617 81.254 81.037 81.698 -0.4952 59 25 4 0 0 0 0.044042 2 44735 44735;44832 51.63 23.143 1 7253600 62212 4233 41537 42466 72439;72440 72439 0.040028962745282115 SYLDNFIKI 9 Unmodified _SYLDNFIKI_ 0 0 0 nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4 nc|ENSG00000130669|O96013-2|PAK4 nc|ENSG00000130669|O96013-2|PAK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.80419921875 2 556.802957 1111.59136 1.3663 0.00076077 1.2481 0.00069494 2.6144 0.0014557 556.8034521524954 81.234 0.74417 81.294 80.866 81.61 0.059929 59 28 3 0 0 0 0.0099157 3 44897 44788;44897;45008 99.799 51.453 1 24766000 62213 4233 41537 42466 72441;72442;72443 72442 0.040028962745282115 SYLDNFIKI 9 Unmodified _SYLDNFIKI_ 0 0 0 nc|ENSG00000130669|O96013-2|PAK4;nc|ENSG00000130669|O96013-3|PAK4;nc|ENSG00000130669|O96013-4|PAK4;ENSG00000130669|ENST00000360442|PAK4 nc|ENSG00000130669|O96013-2|PAK4 nc|ENSG00000130669|O96013-2|PAK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8019409179688 2 556.802957 1111.59136 1.3093 0.000729 -0.33408 -0.00018602 0.97519 0.00054299 556.8028018195661 97.06 0.59054 90.884 90.722 91.313 -6.1757 74 33 4 0 0 0 0.026499 1 64280 64280 71.922 39.617 1 217370000 62214 4233 41537 42466 72444 72444 0.040028962745282115 SYLDQELTTF 10 Unmodified _SYLDQELTTF_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7899780273438 2 608.790244 1215.56593 0.33686 0.00020508 -0.0011637 -7.0848E-07 0.33569 0.00020437 608.7902151399242 74.079 0.5806 74.079 73.713 74.294 0 62 26 4 0 0 0 0.43662 2 41199 41199;41297 29.082 18.258 1 3131600 62215 3286 41538 42467 72445;72446 72445 -0.033226230385935196 SYLDQELTTF 10 Unmodified _SYLDQELTTF_ 0 0 0 nc|ENSG00000117155|Q9Y2D8-2|SSX2IP;nc|ENSG00000117155|Q9Y2D8-3|SSX2IP;ENSG00000117155|ENST00000342203|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7902221679688 2 608.790244 1215.56593 0.67451 0.00041064 -1.7055 -0.0010383 -1.031 -0.00062764 608.7889583872989 83.06 0.67989 76.884 76.608 77.287 -6.1757 78 34 3 0 0 0 0.34435 1 54577 54577 36.127 13.391 1 22339000 62216 3286 41538 42467 72447 72447 -0.033226230385935196 SYLDQFRQL 9 Unmodified _SYLDQFRQL_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3015747070312 2 585.301113 1168.58767 0.33128 0.0001939 -0.80779 -0.0004728 -0.47651 -0.0002789 585.300678484215 63.824 0.20206 63.339 63.172 63.374 -0.48512 15 9 2 0 0 0 0.013041 2 34789 34733;34789 71.922 42.841 1 3633900 62217 4782 41539 42468 72448;72449 72449 0.010122265006657472 SYLDQVKLQF 10 Unmodified _SYLDQVKLQF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.8328247070312 2 620.832246 1239.64994 0.69724 0.00043287 -0.21929 -0.00013614 0.47795 0.00029673 620.8318846483394 73.408 0.33749 72.933 72.781 73.118 -0.47588 41 14 4 0 0 0 0.068112 2 40229 40131;40229 69.338 52.225 1 4947600 62218 7870 41540 42469 72450;72451 72451 0.039699528490018565 SYLDQVKLQF 10 Unmodified _SYLDQVKLQF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8323974609375 2 620.832246 1239.64994 0.36018 0.00022361 -0.81793 -0.0005078 -0.45775 -0.00028419 620.8316391611434 72.933 0.36552 72.975 72.761 73.127 0.041733 38 17 3 0 0 0 0.0045692 2 40131 40131;40238 125.04 101.02 1 9377500 62219 7870 41540 42469 72452;72453 72452 0.039699528490018565 SYLDQVKLQF 10 Unmodified _SYLDQVKLQF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.332275390625 2 620.832246 1239.64994 0.28726 0.00017834 0.68205 0.00042344 0.96931 0.00060178 620.8326609572035 84.361 0.72665 78.185 77.874 78.6 -6.1757 69 41 2 0 0 0 9.03E-11 3 55611 55356;55484;55611 192.32 192.32 1 25180000 62220 7870 41540 42469 72454;72455;72456 72456 0.039699528490018565 SYLDRCLHKF 10 Carbamidomethyl (C) _SYLDRC(Carbamidomethyl (C))LHKF_ SYLDRC(1)LHKF SYLDRC(43)LHKF 0 1 0 nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.8931884765625 3 446.89229 1337.65504 1.8158 0.00081145 -0.50115 -0.00022396 1.3146 0.00058749 446.892166312599 41.769 0.40763 37.161 36.969 37.377 -4.6079 82 25 4 0 0 0 0.12584 1 25046 25046 42.835 27.297 1 70028000 62221 9973 41541 42470 72457 72457 907 -0.0002806656004850083 SYLDRTEQL 9 Unmodified _SYLDRTEQL_ 0 0 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7842407226562 2 562.782753 1123.55095 0.62734 0.00035306 -0.1695 -9.5392E-05 0.45784 0.00025767 562.78266926034 38.916 0.43375 38.916 38.682 39.115 0 69 19 5 0 0 0 0.0048194 2 20783 20783;20904 117.76 75.805 1 118490000 62222 896 41542 42471 72458;72459 72458 -0.005880701158957891 SYLDRTEQL 9 Unmodified _SYLDRTEQL_ 0 0 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7830810546875 2 562.782753 1123.55095 0.66719 0.00037548 0.12791 7.1988E-05 0.7951 0.00044747 562.7827640538768 45.053 0.47604 40.201 39.975 40.451 -4.852 101 31 4 0 0 0 0.0099157 3 27625 27483;27625;27765 80.676 38.836 1 216950000 62223 896 41542 42471 72460;72461;72462 72461 -0.005880701158957891 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2084350585938 3 370.208495 1107.60366 -0.18559 -6.8706E-05 0.30418 0.00011261 0.11859 4.3904E-05 370.20851425851623 45.33 0.19304 45.33 45.17 45.363 0 20 9 3 0 0 0 0.094905 1 24687 24687 34.222 20.607 1 13887000 62224 2759 41543 42472 72463 72463 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2087707519531 3 370.208495 1107.60366 0.017082 6.3238E-06 -0.1692 -6.2639E-05 -0.15212 -5.6315E-05 370.2084254712774 45.546 0.24678 45.221 45.073 45.319 -0.32425 42 13 4 0 0 0 0.052231 1 24297 24297 44.392 26.019 1 111030000 62225 2759 41543 42472 72464 72464 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8089599609375 2 554.809105 1107.60366 0.24172 0.00013411 -0.13534 -7.5088E-05 0.10638 5.9022E-05 554.8087841115045 45.538 0.21587 45.214 45.086 45.302 -0.32425 25 11 3 0 0 0 0.13639 1 24329 24329 24.991 16.835 1 26757000 62226 2759 41543 42472 72465 72465 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.208740234375 3 370.208495 1107.60366 -0.031913 -1.1815E-05 0.31714 0.00011741 0.28522 0.00010559 370.20859423162574 45.236 0.21477 45.208 45.107 45.322 -0.028015 24 11 3 0 0 0 0.052231 1 24298 24298 44.392 26.019 1 22662000 62227 2759 41543 42472 72466 72466 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2088012695312 3 370.208495 1107.60366 1.6011 0.00059274 -0.62173 -0.00023017 0.97936 0.00036257 370.20824848757485 51.034 0.46871 45.385 45.154 45.622 -5.649 80 28 4 0 0 0 0.052231 2 32100 31966;32100 44.392 26.019 1 331590000 62228 2759 41543 42472 72467;72468 72468 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8106689453125 2 554.809105 1107.60366 1.0745 0.00059614 0.50847 0.00028211 1.583 0.00087825 554.8090365605847 51.057 0.53276 45.408 45.053 45.586 -5.649 72 32 3 0 0 0 0.033747 2 32155 32027;32155 49.554 28.017 1 189320000 62229 2759 41543 42472 72469;72470 72470 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2088928222656 3 370.208495 1107.60366 1.5681 0.00058054 -0.3144 -0.00011639 1.2537 0.00046414 370.20821957084866 57.438 0.65671 51.41 51.096 51.753 -6.0275 57 35 2 0 0 0 0.080011 3 36757 36639;36757;36927 37.771 24.156 1 29318000 62230 2759 41543 42472 72471;72472;72473 72472 0.0541593273756007 SYLDRVRSL 9 Unmodified _SYLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MSMS AL20221201_MKP_PDAC_01 4 370.2085266113281 3 370.208495 1107.60366 NaN NaN NaN NaN NaN NaN NaN 57.991 1 51.963 51.463 52.463 -6.0275 0 0 0 0.326 1 37132 37132 23.801 13.002 1 62231 2759 41543 42472 72474 72474 0.0541593273756007 SYLDSIHFF 9 Unmodified _SYLDSIHFF_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7717895507812 2 564.771657 1127.52876 0.67414 0.00038073 -0.42859 -0.00024206 0.24554 0.00013868 564.7714385566345 84.557 0.34021 84.057 83.887 84.227 -0.49961 48 15 4 0 0 0 0.087258 2 46237 46237;46333 36.044 19.895 1 9385800 62232 306 41544 42473 72475;72476 72475 -0.029902497936518557 SYLDSIHFF 9 Unmodified _SYLDSIHFF_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.274658203125 2 564.771657 1127.52876 0.19551 0.00011042 0.51454 0.0002906 0.71004 0.00040101 565.2735150705695 83.997 0.1944 84.06 83.951 84.145 0.063171 10 7 2 0 0 0 0.052168 1 46496 46496 44.407 22.87 1 14739000 62233 306 41544 42473 72477 72477 -0.029902497936518557 SYLDSIHFF 9 Unmodified _SYLDSIHFF_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7743530273438 2 564.771657 1127.52876 1.6353 0.00092356 0.90033 0.00050848 2.5356 0.001432 564.7722602499551 98.339 0.18073 92.163 92.072 92.253 -6.1757 34 11 4 0 0 0 0.087258 1 65201 65201 36.044 15.591 1 129770000 62234 306 41544 42473 72478 72478 -0.029902497936518557 SYLDSNEYKV 10 Unmodified _SYLDSNEYKV_ 0 0 0 REV__ENSG00000108510|ENST00000397786|MED13 REV__ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8619995117188 3 406.527671 1216.56118 -0.10444 -4.2457E-05 0.77388 0.00031461 0.66945 0.00027215 406.5281708233058 51.774 0.26265 51.715 51.592 51.854 -0.058918 37 12 4 0 0 0 0.5933 1 28019 28019 7.0371 0.84524 1 5554000 + 62235 18611 41545 42474 72479 72479 -0.038435071813410104 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7640380859375 2 557.763832 1113.51311 -0.43459 -0.0002424 0.1851 0.00010324 -0.24949 -0.00013915 557.7640458044199 77.49 0.31627 77.007 76.827 77.143 -0.4826 30 15 3 0 0 0 0.087258 1 42390 42390 36.044 19.102 1 5263300 62236 1813 41546 42475 72480 72480 -0.03910536310718271 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.764892578125 2 557.763832 1113.51311 0.93727 0.00052278 0.63776 0.00035572 1.575 0.00087849 557.7642601804345 92.435 0.42994 86.26 86.115 86.545 -6.1757 34 25 2 0 0 0 0.070838 2 61105 61105;61240 39.957 14.74 1 9720400 62237 1813 41546 42475 72481;72482 72481 -0.03910536310718271 SYLDSVHFF 9 Unmodified _SYLDSVHFF_ 0 0 0 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 ENSG00000100393|ENST00000263253|EP300 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 557.763832 1113.51311 0.41012 0.00022875 0.9412 0.00052497 1.3513 0.00075372 557.7643909619597 76.934 0.17331 76.984 76.91 77.084 0.050102 -0.011613 0.00056625 NaN 36.044 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1514100 62238 1813 41546 42475 -0.03910536310718271 SYLDSVSLM 9 Unmodified _SYLDSVSLM_ 0 0 0 ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B ENSG00000169221|ENST00000409939|TBC1D10B MSMS AL20221201_MKP_PDAC_01 4 507.7442016601562 2 507.74425 1013.47395 NaN NaN NaN NaN NaN NaN NaN 81.433 1 75.257 74.757 75.757 -6.1757 0 0 0 0.10545 1 53452 53452 42.095 11.87 1 62239 7850 41547 42476 72483 72483 -0.03225004656587771 SYLDVYLIHW 10 Unmodified _SYLDVYLIHW_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10;nc|ENSG00000227471|C9JRZ8|AKR1B15;ENSG00000227471|ENST00000457545|AKR1B15 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.338623046875 2 654.834788 1307.65502 2.2878 0.0014981 0.20087 0.00013154 2.4887 0.0016297 654.8350684257787 94 0.42813 94.014 93.811 94.239 0.014244 45 16 4 0 0 0 0.10406 2 52215 52215;52310 64.236 53.437 1 9308100 62240 10046 41548 42477 72484;72485 72484 0.01350256711612019 SYLDVYLIHW 10 Unmodified _SYLDVYLIHW_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10;nc|ENSG00000227471|C9JRZ8|AKR1B15;ENSG00000227471|ENST00000457545|AKR1B15 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MSMS AL20221201_MKP_PDAC_01 4 654.83642578125 2 654.834788 1307.65502 NaN NaN NaN NaN NaN NaN NaN 99.67 1 93.494 92.994 93.994 -6.1757 0 0 0 0.017671 1 66445 66445 104.8 74.959 1 62241 10046 41548 42477 72486 72486 0.01350256711612019 SYLEGAVYI 9 Unmodified _SYLEGAVYI_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21;ENST00000549689.5_1_12:117612134-117624310:-|nuORF nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MSMS AL20221201_MKP_PDAC_01 4 507.7608032226562 2 507.760758 1013.50696 NaN NaN NaN NaN NaN NaN NaN 79.194 1 73.019 72.519 73.519 -6.1757 0 0 0 0.20498 1 51880 51880 30.225 13.283 1 62242 16205 41549 42478 72487 72487 0.0007494545775443839 SYLEKQVVTF 10 Unmodified _SYLEKQVVTF_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.326416015625 2 607.326796 1212.63904 0.52692 0.00032001 -0.12778 -7.7604E-05 0.39914 0.00024241 607.3266292997472 54.209 0.25956 54.209 54.07 54.33 0 30 11 3 0 0 0 0.047829 1 30035 30035 59.368 37.831 1 7820400 62243 513 41550 42479 72488 72488 0.04122550474698983 SYLEKQVVTF 10 Unmodified _SYLEKQVVTF_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3260498046875 2 607.326796 1212.63904 0.072689 4.4146E-05 -0.63088 -0.00038315 -0.55819 -0.000339 607.3265796662628 54.741 0.4516 54.274 53.968 54.42 -0.46664 54 22 4 0 0 0 0.0086576 2 29633 29633;29747 90.135 50.185 1 34264000 62244 513 41550 42479 72489;72490 72489 0.04122550474698983 SYLEKQVVTF 10 Unmodified _SYLEKQVVTF_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.326171875 2 607.326796 1212.63904 0.14236 8.6462E-05 -0.28259 -0.00017162 -0.14023 -8.5163E-05 607.3268012856989 54.418 0.17836 54.351 54.202 54.38 -0.066936 13 8 2 0 0 0 0.14688 1 29544 29544 40.239 27.999 1 3789900 62245 513 41550 42479 72491 72491 0.04122550474698983 SYLEKQVVTF 10 Unmodified _SYLEKQVVTF_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3270874023438 2 607.326796 1212.63904 0.84981 0.00051611 -3.1095 -0.0018885 -2.2597 -0.0013724 607.3235569573776 60.794 0.79789 54.646 54.067 54.865 -6.1478 77 42 3 0 0 0 0.014503 2 39215 39088;39215 80.676 54.408 1 94947000 62246 513 41550 42479 72492;72493 72493 0.04122550474698983 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.8216552734375 2 554.821681 1107.62881 0.75842 0.00042079 -0.29801 -0.00016534 0.4604 0.00025544 554.821465783037 38.976 0.34264 38.976 38.811 39.154 0 50 15 4 0 0 0 0.0048194 2 20818 20818;20925 117.76 61.584 1 32001000 + 62247 176 41551 42480 72494;72495 72494 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2171936035156 3 370.21688 1107.62881 0.34755 0.00012867 0.12453 4.6104E-05 0.47209 0.00017477 370.21689436980165 38.975 0.3237 38.975 38.811 39.135 0 37 14 3 0 0 0 0.029718 2 20830 20830;20938 44.392 18.371 1 19135000 + 62248 176 41551 42480 72496;72497 72496 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8217163085938 2 554.821681 1107.62881 0.18656 0.00010351 -0.28744 -0.00015948 -0.10087 -5.5967E-05 554.8214659842629 39.326 0.30294 39.039 38.882 39.185 -0.28687 51 14 5 0 0 0 0.0085366 2 20687 20687;20794 90.135 33.958 1 143300000 + 62249 176 41551 42480 72498;72499 72498 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2172241210938 3 370.21688 1107.62881 -0.037342 -1.3825E-05 -0.081972 -3.0347E-05 -0.11931 -4.4172E-05 370.21684714041845 39.291 0.23936 39.004 38.904 39.143 -0.28687 30 11 3 0 0 0 0.029718 1 20703 20703 44.392 23.811 1 29931000 + 62250 176 41551 42480 72500 72500 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.821533203125 2 554.821681 1107.62881 0.37472 0.00020791 -0.25646 -0.00014229 0.11826 6.5615E-05 554.8214687544224 38.931 0.26286 38.943 38.801 39.063 0.011452 34 12 3 0 0 0 0.0088231 1 20686 20686 103.82 49.991 1 21039000 + 62251 176 41551 42480 72501 72501 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2169799804688 3 370.21688 1107.62881 0.16711 6.1867E-05 0.091758 3.397E-05 0.25887 9.5838E-05 370.21679784071006 38.927 0.24343 38.939 38.82 39.063 0.011456 24 11 3 0 0 0 0.2324 1 20707 20707 24.882 9.6331 1 5866900 + 62252 176 41551 42480 72502 72502 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8218383789062 2 554.821681 1107.62881 NaN NaN NaN NaN NaN NaN NaN 39.052 1 39.064 38.564 39.564 0.011452 0 0 0 0.54558 1 20791 20791 14.405 5.66 1 + 62253 176 41551 42480 72503 72503 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2173156738281 3 370.21688 1107.62881 1.11 0.00041092 0.25278 9.3584E-05 1.3627 0.00050451 370.21696005959205 44.114 0.75578 39.315 38.854 39.609 -4.7993 142 51 5 0 0 0 0.040683 3 27006 26734;26874;27006 39.213 18.632 1 350240000 + 62254 176 41551 42480 72504;72505;72506 72506 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8217163085938 2 554.821681 1107.62881 0.58208 0.00032295 0.17435 9.6734E-05 0.75643 0.00041968 554.821821710558 44.089 0.58166 39.324 39.034 39.615 -4.7648 130 40 5 0 0 0 0.030212 2 26762 26762;26899 55.235 23.966 1 362230000 + 62255 176 41551 42480 72507;72508 72507 0.07929987540137517 SYLEKVRTL 9 Unmodified _SYLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2178344726562 3 370.21688 1107.62881 1.6953 0.00062762 0.68776 0.00025462 2.383 0.00088224 370.2171566137403 50.428 0.29061 44.889 44.68 44.971 -5.5391 31 18 2 0 0 0 0.044296 1 31539 31539 37.771 11.751 1 13302000 + 62256 176 41551 42480 72509 72509 0.07929987540137517 SYLEKVVAI 9 Unmodified _SYLEKVVAI_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.263427734375 2 511.30005 1020.58555 0.30278 0.00015481 0.06601 3.3751E-05 0.36879 0.00018856 511.3001111064216 58.889 0.24139 58.889 58.723 58.965 0 15 10 2 0 0 0 0.19891 1 32828 32828 11.64 0.81637 1 1392900 62257 13392 41552 42481 72510 72510 0.07607797762852897 SYLEKVVAI 9 Unmodified _SYLEKVVAI_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ENSG00000138443|ENST00000261018|ABI2;ENST00000464761.1_1_2:204276063-204301494:+|nuORF nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.3001098632812 2 511.30005 1020.58555 0.13527 6.9164E-05 0.58695 0.00030011 0.72222 0.00036927 511.30045571115056 59.376 0.26089 58.886 58.707 58.968 -0.49079 28 11 3 0 0 0 0.040683 1 32255 32255 49.554 18.918 1 3208400 62258 13392 41552 42481 72511 72511 0.07607797762852897 SYLELVKSL 9 Unmodified _SYLELVKSL_ 0 0 0 nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC nc|ENSG00000143252|Q99643-5|SDHC nc|ENSG00000143252|Q99643-5|SDHC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.3057250976562 2 526.305332 1050.59611 0.5977 0.00031457 0.40187 0.00021151 0.99957 0.00052608 526.3052896048233 73.482 0.33744 73.006 72.871 73.208 -0.47588 25 14 2 0 0 0 0.16019 2 40285 40174;40285 34.932 12.196 1 3221700 62259 5482 41553 42482 72512;72513 72513 0.07283780417287744 SYLELVKSL 9 Unmodified _SYLELVKSL_ 0 0 0 nc|ENSG00000143252|Q99643-5|SDHC;nc|ENSG00000143252|Q99643-3|SDHC;ENSG00000143252|ENST00000367975|SDHC nc|ENSG00000143252|Q99643-5|SDHC nc|ENSG00000143252|Q99643-5|SDHC MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3049926757812 2 526.305332 1050.59611 1.13 0.00059473 0.4333 0.00022805 1.5633 0.00082278 526.3054107275759 91.715 0.41516 85.539 85.29 85.705 -6.1757 34 22 2 0 0 0 0.043414 2 60552 60552;60674 59.368 25.416 1 10885000 62260 5482 41553 42482 72514;72515 72514 0.07283780417287744 SYLENLENL 9 Unmodified _SYLENLENL_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7716674804688 2 547.771854 1093.52915 0.18919 0.00010363 1.9974 0.0010941 2.1865 0.0011977 547.7723203012906 72.069 0.23647 72.069 71.923 72.16 0 17 10 2 0 0 0 0.25681 1 40114 40114 19.257 4.4187 1 827700 62261 8855 41554 42483 72516 72516 -0.01386874864465426 SYLENPTSY 9 Unmodified _SYLENPTSY_ 0 0 0 ENSG00000112561|ENST00000373033|TFEB ENSG00000112561|ENST00000373033|TFEB ENSG00000112561|ENST00000373033|TFEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2429809570312 2 537.242929 1072.47131 -0.1025 -5.5068E-05 -1.1457 -0.00061554 -1.2482 -0.00067061 537.2428202937302 45.136 0.17328 45.136 45.036 45.209 0 13 8 2 0 0 0 0.12424 1 24608 24608 30.637 15.798 1 2825500 62262 2899 41555 42484 72517 72517 -0.06203136789895325 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2562866210938 2 562.256371 1122.49819 0.67889 0.00038171 -0.47339 -0.00026617 0.2055 0.00011554 562.2561342402034 50.866 0.30592 50.866 50.744 51.05 0 55 18 4 0 0 0 0.015445 2 28148 28033;28148 68.081 53.242 1 91040000 62263 16110 41556 42485 72518;72519 72519 -0.058160281787195345 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.257568359375 2 562.256371 1122.49819 -0.019934 -1.1208E-05 -0.37638 -0.00021162 -0.39631 -0.00022283 562.2561542467521 51.469 0.16743 51.055 51.009 51.176 -0.41351 13 8 2 0 0 0 0.011968 1 27767 27767 74.929 49.53 1 7017100 62264 16110 41556 42485 72520 72520 -0.058160281787195345 SYLENVDHF 9 Unmodified _SYLENVDHF_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2;ENST00000576872.1_1_17:4872867-4875829:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.25732421875 2 562.256371 1122.49819 1.1138 0.00062624 0.39734 0.00022341 1.5111 0.00084965 562.2567206786564 57.695 0.35754 51.667 51.461 51.819 -6.0275 59 19 4 0 0 0 0.011968 2 36984 36852;36984 74.929 42.624 1 192950000 62265 16110 41556 42485 72521;72522 72522 -0.058160281787195345 SYLEPREMKH 10 Unmodified _SYLEPREMKH_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.5477294921875 3 430.548412 1288.62341 NaN NaN NaN NaN NaN NaN NaN 45.156 1 45.128 44.628 45.628 -0.028011 0 0 0 0.31181 1 24246 24246 36.395 7.1036 1 62266 358 41557 42486 72523 72523 -0.009360593139945195 SYLEREDFF 9 Unmodified _SYLEREDFF_ 0 0 0 nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;nc|ENSG00000182979|Q13330-2|MTA1;ENST00000494026.1_1_14:105915673-105921005:+|nuORF nc|ENSG00000182979|Q13330-3|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.27734375 2 603.277303 1204.54005 0.58833 0.00035493 -2.716 -0.0016385 -2.1277 -0.0012836 603.2760770111911 52.266 0.17953 51.832 51.73 51.909 -0.43367 18 7 3 0 0 0 0.5029 1 28236 28236 7.2892 0.56607 1 1538500 62267 9106 41558 42487 72524 72524 -0.054034724902066955 SYLERHGLINF 11 Unmodified _SYLERHGLINF_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2390441894531 3 450.238455 1347.69353 0.25464 0.00011465 0.57337 0.00025815 0.82802 0.0003728 450.2386418052434 55.241 0.27574 54.763 54.607 54.883 -0.47798 38 12 4 0 0 0 0.51719 1 29933 29933 15.538 10.823 1 4992800 62268 276 41559 42488 72525 72525 0.033595623461451396 SYLERHGLINF 11 Unmodified _SYLERHGLINF_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.8544311523438 2 674.854044 1347.69353 0.32402 0.00021867 0.63119 0.00042596 0.95521 0.00064463 674.8542795297515 55.249 0.1701 54.771 54.671 54.841 -0.47798 12 7 2 0 0 0 0.16739 1 29958 29958 35.08 26.103 1 1488800 62269 276 41559 42488 72526 72526 0.033595623461451396 SYLERHGLINF 11 Unmodified _SYLERHGLINF_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.5734558105469 3 450.238455 1347.69353 0.78819 0.00035487 -0.55957 -0.00025194 0.22862 0.00010293 450.2382160128724 54.921 0.27555 54.853 54.724 54.999 -0.068737 42 13 4 0 0 0 0.47711 1 29811 29811 17.572 11.704 1 15298000 62270 276 41559 42488 72527 72527 0.033595623461451396 SYLERHGLINF 11 Unmodified _SYLERHGLINF_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.3546142578125 2 674.854044 1347.69353 0.6063 0.00040917 -0.14497 -9.7835E-05 0.46133 0.00031133 675.3559382002841 54.92 0.17501 54.851 54.764 54.939 -0.068741 14 8 2 0 0 0 0.041516 1 29842 29842 48.073 37.273 1 3002900 62271 276 41559 42488 72528 72528 0.033595623461451396 SYLERHGLINF 11 Unmodified _SYLERHGLINF_ 0 0 0 ENSG00000004487|ENST00000400181|KDM1A;nc|ENSG00000004487|O60341|KDM1A;ENST00000481879.1_1_1:23376923-23381674:+|nuORF ENSG00000004487|ENST00000400181|KDM1A ENSG00000004487|ENST00000400181|KDM1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2384948730469 3 450.238455 1347.69353 0.25058 0.00011282 -0.10398 -4.6816E-05 0.1466 6.6003E-05 450.2381533653529 84.852 0.25599 78.676 78.564 78.82 -6.1757 20 14 2 0 0 0 0.54415 1 55926 55926 14.171 4.6268 1 13797000 62272 276 41559 42488 72529 72529 0.033595623461451396 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.2157592773438 3 421.21565 1260.62512 0.026988 1.1368E-05 0.0032512 1.3695E-06 0.030239 1.2737E-05 421.21564557400956 38.001 0.22412 37.73 37.618 37.842 -0.27133 34 10 4 0 0 0 0.06294 1 19968 19968 32.037 19.182 1 13825000 62273 844 41560 42489 72530 72530 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3200073242188 2 631.319837 1260.62512 NaN NaN NaN NaN NaN NaN NaN 38.06 1 37.789 37.289 38.289 -0.27133 0 0 0 0.82396 1 20026 20026 4.756 0.81161 1 62274 844 41560 42489 72531 72531 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2160339355469 3 421.21565 1260.62512 -0.11797 -4.969E-05 0.61638 0.00025963 0.49841 0.00020994 421.2159833812349 37.615 0.212 37.632 37.498 37.71 0.01704 19 10 2 0 0 0 0.10247 1 19976 19976 24.882 17.273 1 3530700 62275 844 41560 42489 72532 72532 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2155456542969 3 421.21565 1260.62512 1.1277 0.00047501 -0.48104 -0.00020262 0.64667 0.00027239 421.2154270879366 46.559 0.22712 46.526 46.39 46.617 -0.033421 15 10 2 0 0 0 0.38785 1 25057 25057 8.9762 0 1 2807300 62276 844 41560 42489 72533 72533 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2165222167969 3 421.21565 1260.62512 1.0118 0.0004262 -0.46531 -0.000196 0.54652 0.0002302 421.21555240063753 42.242 0.40027 37.557 37.364 37.764 -4.6846 75 25 4 0 0 0 0.028475 2 25409 25409;25546 43.982 31.053 1 50124000 62277 844 41560 42489 72534;72535 72534 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.317138671875 2 631.319837 1260.62512 0.53859 0.00034002 -0.93853 -0.00059251 -0.39994 -0.00025249 631.3191117253212 42.26 0.28069 37.575 37.44 37.721 -4.6846 26 17 2 0 0 0 0.01958 1 25457 25457 63.961 36.332 1 8979000 62278 844 41560 42489 72536 72536 0.005233177662603339 SYLERYQRF 9 Unmodified _SYLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 631.319837 1260.62512 -0.24509 -0.00015473 0.00062928 3.9727E-07 -0.24446 -0.00015433 631.3196353961517 38.014 0.14379 37.742 37.638 37.782 -0.27133 0.083643 0.00046145 NaN 63.961 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1266400 62279 844 41560 42489 0.005233177662603339 SYLESILTY 9 Unmodified _SYLESILTY_ 0 0 0 REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.779296875 2 544.779148 1087.54374 0.2161 0.00011772 0.35722 0.0001946 0.57331 0.00031233 544.7793275266587 96.774 1.1019 96.774 95.96 97.062 0 131 72 3 0 0 0 0.30562 1 53520 53520 16.942 0 1 3894700 + 62280 26032 41561 42490 72537 72537 0.0034719728366781055 SYLESILTY 9 Unmodified _SYLESILTY_ 0 0 0 REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1088.5537109375 1 1088.55102 1087.54374 -0.42334 -0.00046083 0.13722 0.00014938 -0.28612 -0.00031145 1088.5514137970051 96.742 0.45305 96.742 96.542 96.995 0 41 25 2 0 0 0 0.43463 1 53532 53532 10.824 3.5347 1 752310 + 62281 26032 41561 42490 72538 72538 0.0034719728366781055 SYLESILTY 9 Unmodified _SYLESILTY_ 0 0 0 REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7783813476562 2 544.779148 1087.54374 NaN NaN NaN NaN NaN NaN NaN 95.492 1 95.492 94.992 95.992 0 0 0 0 0.82739 1 52781 52781 4.3292 1.7518 1 + 62282 26032 41561 42490 72539 72539 0.0034719728366781055 SYLESILTY 9 Unmodified _SYLESILTY_ 0 0 0 REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.779052734375 2 544.779148 1087.54374 NaN NaN NaN NaN NaN NaN NaN 95.707 1 95.707 95.207 96.207 0 0 0 0 0.82739 1 52897 52897 4.3292 0 1 + 62283 26032 41561 42490 72540 72540 0.0034719728366781055 SYLESILTY 9 Unmodified _SYLESILTY_ 0 0 0 REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF REV__ENST00000369306.7_1_1:145523400-145523604:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1088.55102 1087.54374 -0.42334 -0.00046083 0.13722 0.00014938 -0.28612 -0.00031145 1088.5514137970051 96.742 0.45305 96.742 96.542 96.995 0 0 0 NaN 10.824 41 25 2 NaN NaN NaN NaN 0 NaN NaN 0 752310 + 62284 26032 41561 42490 0.0034719728366781055 SYLETFREQ 9 Unmodified _SYLETFREQ_ 0 0 0 nc|ENSG00000188554|Q14596-2|NBR1;ENSG00000188554|ENST00000590996|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 nc|ENSG00000188554|Q14596-2|NBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.78271484375 2 586.782753 1171.55095 NaN NaN NaN NaN NaN NaN NaN 77.946 1 77.946 77.446 78.446 0 0 0 0 0.81228 1 43326 43326 5.7319 0.83484 1 62285 9667 41562 42491 72541 72541 -0.0279607011589178 SYLEVLLKL 9 Unmodified _SYLEVLLKL_ 0 0 0 nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6 nc|ENSG00000143870|Q15084-3|PDIA6 nc|ENSG00000143870|Q15084-3|PDIA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3319702148438 2 539.33135 1076.64815 2.3109 0.0012463 -1.1985 -0.00064638 1.1124 0.00059996 539.3304036289836 96.434 0.36453 96.427 96.251 96.616 -0.007019 25 12 3 0 0 0 0.030212 1 53558 53558 69.105 31.131 1 2970800 62286 5563 41563 42492 72542 72542 0.11288943831027609 SYLFGLISL 9 Unmodified _SYLFGLISL_ 0 0 0 REV__nc|ENSG00000092931|O43934-2|MFSD11 REV__nc|ENSG00000092931|O43934-2|MFSD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.7900085449219 2 506.789318 1011.56408 4.4644 0.0022625 -2.9358 -0.0014878 1.5286 0.00077466 506.7865942781375 99.029 0.24501 99.001 98.863 99.108 -0.028282 29 8 6 0 0 0 0.026094 1 55014 55014 57.471 0 1 6865600 + 62287 17919 41564 42493 72543 72543 0.058764127341419226 SYLFGLISL 9 Unmodified _SYLFGLISL_ 0 0 0 REV__nc|ENSG00000092931|O43934-2|MFSD11 REV__nc|ENSG00000092931|O43934-2|MFSD11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.789318 1011.56408 -0.017966 -9.105E-06 -2.1389 -0.001084 -2.1569 -0.0010931 506.78834536112396 99.219 0.17101 99.026 98.917 99.088 -0.1932 0.012621 6.3661E-05 NaN 57.471 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 2320100 + 62288 17919 41564 42493 0.058764127341419226 SYLGNNQYL 9 Unmodified _SYLGNNQYL_ 0 0 0 REV__nc|ENSG00000137275|Q13546-2|RIPK1 REV__nc|ENSG00000137275|Q13546-2|RIPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8418884277344 3 357.841701 1070.50327 1.1569 0.00041397 -0.78162 -0.0002797 0.37524 0.00013428 357.8413466553509 27.325 0.37603 24.289 24.059 24.435 -3.0365 40 18 3 0 0 0 0.2143 1 15099 15099 15.248 1.6336 1 43845000 + 62289 20232 41565 42494 72544 72544 -0.02915724316108026 SYLGNNQYL 9 Unmodified _SYLGNNQYL_ 0 0 0 REV__nc|ENSG00000137275|Q13546-2|RIPK1 REV__nc|ENSG00000137275|Q13546-2|RIPK1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 357.841701 1070.50327 1.1569 0.00041397 -0.78162 -0.0002797 0.37524 0.00013428 357.8413466553509 27.325 0.37603 24.289 24.059 24.435 -3.0365 0.02243 -0.00053369 NaN 15.248 40 18 3 NaN NaN NaN NaN 0 NaN NaN 0 43845000 + 62290 20232 41565 42494 -0.02915724316108026 SYLHEPAVL 9 Unmodified _SYLHEPAVL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.775390625 2 514.7742 1027.53385 0.61319 0.00031566 -0.43205 -0.00022241 0.18115 9.325E-05 514.77411107443 49.803 0.49319 49.803 49.582 50.075 0 66 22 5 0 0 0 0.019303 2 27366 27366;27468 64.236 27.247 1 99121000 62291 4094;7598 41566 42495 72545;72546 72545 0.021180540689329064 SYLHEPAVL 9 Unmodified _SYLHEPAVL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7744140625 2 514.7742 1027.53385 0.17604 9.0623E-05 1.1923 0.00061376 1.3683 0.00070438 514.7749629473327 56.025 0.53252 50.104 49.861 50.393 -5.9211 82 29 4 0 0 0 0.016184 2 35602 35602;35735 67.344 29.193 1 163780000 62292 4094;7598 41566 42495 72547;72548 72547 0.021180540689329064 SYLHEVFEF 9 Unmodified _SYLHEVFEF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.77783203125 2 585.776939 1169.53933 0.59052 0.00034591 -0.40224 -0.00023563 0.18827 0.00011029 585.7766996538129 73.36 0.59038 72.884 72.451 73.042 -0.47588 85 26 4 0 0 0 0.2143 1 39978 39978 21.747 14.457 1 17936000 62293 873 41567 42496 72549 72549 -0.038662671392330594 SYLHEVFEF 9 Unmodified _SYLHEVFEF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.777587890625 2 585.776939 1169.53933 1.1847 0.00069395 0.85636 0.00050164 2.041 0.0011956 585.7770364671493 94.303 0.50978 88.127 87.862 88.372 -6.1757 50 29 2 0 0 0 0.019303 2 62485 62360;62485 64.236 36.608 1 8705800 62294 873 41567 42496 72550;72551 72551 -0.038662671392330594 SYLHFFFY 8 Unmodified _SYLHFFFY_ 0 0 0 REV__ENST00000472487.5_1_1:59121465-59121591:-|nuORF REV__ENST00000472487.5_1_1:59121465-59121591:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 375.1818237304688 3 375.179766 1122.51747 NaN NaN NaN NaN NaN NaN NaN 89.973 1 83.798 83.298 84.298 -6.1757 0 0 0 0.9706 1 59402 59402 7.9102 2.1267 1 + 62295 27518 41568 42497 72552 72552 -0.03889027097147846 SYLHFGVPI 9 Unmodified _SYLHFGVPI_ 0 0 0 REV__ENSG00000104147|ENST00000220514|OIP5 REV__ENSG00000104147|ENST00000220514|OIP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7789306640625 2 516.779285 1031.54402 NaN NaN NaN NaN NaN NaN NaN 72.111 1 72.15 71.65 72.65 0.039024 0 0 0 0.40995 1 39706 39706 19.439 0 1 + 62296 18339 41569 42498 72553 72553 0.029506617941933655 SYLIAHGFF 9 Unmodified _SYLIAHGFF_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000589561.5_1_19:10746968-10754058:+|nuORF;nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;nc|ENSG00000137968|Q8NCS7-5|SLC44A5 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7717895507812 2 527.77146 1053.52837 0.25807 0.0001362 -0.26368 -0.00013916 -0.0056025 -2.9568E-06 527.7712965631679 73.688 0.27502 73.732 73.568 73.843 0.043983 23 12 2 0 0 0 0.10925 1 40595 40595 32.117 15.175 1 2941600 62297 4132;4996 41570 42499 72554 72554 0.0037437527712427254 SYLIEHQRI 9 Unmodified _SYLIEHQRI_ 0 0 0 nc|ENSG00000161298|Q96SR6-3|ZNF382;nc|ENSG00000161298|Q96SR6-2|ZNF382;ENSG00000161298|ENST00000292928|ZNF382;ENSG00000147789|ENST00000532777|ZNF7;nc|ENSG00000147789|P17097-2|ZNF7 nc|ENSG00000161298|Q96SR6-3|ZNF382 nc|ENSG00000161298|Q96SR6-3|ZNF382 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.8802185058594 3 386.880379 1157.61931 -0.24772 -9.5839E-05 -0.037897 -1.4662E-05 -0.28562 -0.0001105 386.88001200073364 34.223 0.21337 34.032 33.917 34.13 -0.19131 10 7 2 0 0 0 0.37578 1 17897 17897 13.615 5.4593 1 1330200 62298 5881 41571 42500 72555 72555 0.0468021925460107 SYLIEHQRI 9 Unmodified _SYLIEHQRI_ 0 0 0 nc|ENSG00000161298|Q96SR6-3|ZNF382;nc|ENSG00000161298|Q96SR6-2|ZNF382;ENSG00000161298|ENST00000292928|ZNF382;ENSG00000147789|ENST00000532777|ZNF7;nc|ENSG00000147789|P17097-2|ZNF7 nc|ENSG00000161298|Q96SR6-3|ZNF382 nc|ENSG00000161298|Q96SR6-3|ZNF382 MSMS AL20221201_MKP_PDAC_01 4 386.8806457519531 3 386.880379 1157.61931 NaN NaN NaN NaN NaN NaN NaN 38.12 1 33.751 33.251 34.251 -4.3689 0 0 0 0.20097 1 22448 22448 30.703 11.341 1 62299 5881 41571 42500 72556 72556 0.0468021925460107 SYLIKYSKKK 10 Unmodified _SYLIKYSKKK_ 0 0 0 REV__ENST00000411702.7_1_17:78355638-78356025:+|nuORF REV__ENST00000411702.7_1_17:78355638-78356025:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.3828125 2 629.381906 1256.74926 NaN NaN NaN NaN NaN NaN NaN 103.34 1 103.29 102.79 103.79 -0.047928 0 0 0 1.0019 1 57390 57390 0.45834 0 1 + 62300 26714 41572 42501 72557 72557 0.13115395533736773 SYLILDEWL 9 Unmodified _SYLILDEWL_ 0 0 0 REV__nc|ENSG00000006715|P49754-2|VPS41 REV__nc|ENSG00000006715|P49754-2|VPS41 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.00390625 3 384.537619 1150.59103 1.4143 0.00054385 -0.56018 -0.00021541 0.85411 0.00032844 384.537521704809 19.466 0.60226 16.809 16.546 17.149 -2.6564 183 49 5 0 0 0 0.21798 1 10165 10165 0.26902 0.26902 1 325730000 + 62301 16997 41573 42502 72558 72558 0.021754765546575072 SYLIQAEKI 9 Unmodified _SYLIQAEKI_ 0 0 0 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 nc|ENSG00000109689|Q9P246-2|STIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.8031005859375 2 532.802957 1063.59136 0.3745 0.00019953 0.40224 0.00021432 0.77675 0.00041385 532.8032524651078 50.273 0.35784 50.273 50.053 50.411 0 35 16 3 0 0 0 0.017075 1 27698 27698 66.457 26.507 1 6483400 62302 16113 41574 42503 72559 72559 0.062108962745242025 SYLIQHQRF 9 Unmodified _SYLIQHQRF_ 0 0 0 nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.8799438476562 3 397.88049 1190.61964 -0.27222 -0.00010831 0.58019 0.00023084 0.30797 0.00012253 397.88043905055196 34.835 0.15942 34.644 34.541 34.7 -0.19131 10 6 2 0 0 0 0.54213 1 18246 18246 4.897 3.3047 1 1496100 62303 10027 41575 42504 72560 72560 0.03195638974466419 SYLIQHQRF 9 Unmodified _SYLIQHQRF_ 0 0 0 nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2146911621094 3 397.88049 1190.61964 -0.072859 -2.8989E-05 0.80667 0.00032096 0.73381 0.00029197 397.88069101767127 34.601 0.19296 34.628 34.52 34.713 0.027405 13 8 2 0 0 0 0.091924 1 18260 18260 34.932 16.211 1 3138400 62304 10027 41575 42504 72561 72561 0.03195638974466419 SYLIQHQRF 9 Unmodified _SYLIQHQRF_ 0 0 0 nc|ENSG00000197951|Q9NQZ8|ZNF71;ENSG00000197951|ENST00000599599|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 nc|ENSG00000197951|Q9NQZ8|ZNF71 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2162475585938 3 397.88049 1190.61964 0.5917 0.00023542 3.2545 0.0012949 3.8462 0.0015303 397.88137763300404 38.79 0.40082 34.339 34.164 34.565 -4.4509 32 25 2 0 0 0 0.20507 1 22977 22977 22.658 11.859 1 6188800 62305 10027 41575 42504 72562 72562 0.03195638974466419 SYLIRHQKI 9 Unmodified _SYLIRHQKI_ 0 0 0 ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623 ENSG00000183309|ENST00000526926|ZNF623 ENSG00000183309|ENST00000526926|ZNF623 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5648193359375 3 386.564502 1156.67168 0.083389 3.2235E-05 1.1681 0.00045155 1.2515 0.00048379 386.5649608310561 22.017 0.16661 22.031 21.919 22.085 0.013798 15 6 3 0 0 0 0.35911 1 11289 11289 14.405 3.6059 1 1391500 62306 9134 41576 42505 72563 72563 0.09960802388218326 SYLISMGPSF 10 Unmodified _SYLISMGPSF_ 0 0 0 REV__nc|ENSG00000117322|P20023-2|CR2 REV__nc|ENSG00000117322|P20023-2|CR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2691040039062 2 551.267893 1100.52123 0.79444 0.00043795 1.9631 0.0010822 2.7575 0.0015201 551.2682961704094 74.754 0.34412 74.278 74.11 74.454 -0.47588 28 13 3 0 0 0 0.44373 1 40915 40915 19.257 0 1 1573000 + 62307 29593 41577 42506 72564 72564 -0.02500725385584701 SYLITSVEL 9 Unmodified _SYLITSVEL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7821044921875 2 512.78169 1023.54883 0.25373 0.00013011 0.46469 0.00023828 0.71842 0.00036839 512.7818288706442 80.207 0.39466 80.207 80.013 80.408 0 48 21 3 0 0 0 0.2143 2 44571 44478;44571 21.747 8.2388 1 3011700 62308 977 41578 42507 72565;72566 72566 0.0379950114629537 SYLITSVEL 9 Unmodified _SYLITSVEL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7819213867188 2 512.78169 1023.54883 0.74585 0.00038246 0.02896 1.485E-05 0.77481 0.00039731 512.7816666826261 80.688 0.44156 80.195 79.981 80.422 -0.49247 51 18 4 0 0 0 0.14602 2 44234 44137;44234 28.487 11.545 1 4472300 62309 977 41578 42507 72567;72568 72568 0.0379950114629537 SYLITSVEL 9 Unmodified _SYLITSVEL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7823486328125 2 512.78169 1023.54883 1.0663 0.0005468 0.23319 0.00011958 1.2995 0.00066638 512.7816880574183 88.336 0.62331 82.16 81.889 82.512 -6.1757 87 34 3 0 0 0 0.016184 3 58440 58180;58303;58440 67.344 31.3 1 64079000 62310 977 41578 42507 72569;72570;72571 72571 0.0379950114629537 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2133483886719 3 385.213246 1152.61791 0.65946 0.00025403 -0.15665 -6.0344E-05 0.50281 0.00019369 385.2131296588603 47.449 0.28456 47.096 46.938 47.223 -0.3526 34 13 3 0 0 0 0.10247 1 25416 25416 24.882 5.2556 1 18632000 62311 2054 41579 42508 72572 72572 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.317138671875 2 577.316232 1152.61791 0.73593 0.00042487 0.16568 9.5648E-05 0.90161 0.00052051 577.3164910816383 47.468 0.22255 47.115 46.98 47.203 -0.3526 22 10 3 0 0 0 0.014182 1 25432 25432 69.338 32.832 1 5851900 62312 2054 41579 42508 72573 72573 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.213134765625 3 385.213246 1152.61791 0.93882 0.00036164 -0.77868 -0.00029996 0.16014 6.1687E-05 385.2128348594494 47.147 0.38546 47.114 46.919 47.305 -0.033417 53 19 3 0 0 0 0.07087 2 25439 25333;25439 43.982 31.807 1 33656000 62313 2054 41579 42508 72574;72575 72575 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.816650390625 2 577.316232 1152.61791 1.2325 0.00071154 -0.83838 -0.00048401 0.39412 0.00022753 577.3157429205397 47.102 0.2458 47.068 46.996 47.242 -0.033417 24 12 2 0 0 0 0.0088668 2 25360 25360;25465 87.258 50.752 1 12239000 62314 2054 41579 42508 72576;72577 72576 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2135009765625 3 385.213246 1152.61791 1.3317 0.00051299 0.046062 1.7744E-05 1.3778 0.00053074 385.2132100079556 52.658 0.42778 46.923 46.672 47.099 -5.7345 61 23 3 0 0 0 0.029718 2 33141 33141;33261 44.392 24.356 1 200550000 62315 2054 41579 42508 72578;72579 72578 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3182373046875 2 577.316232 1152.61791 0.96633 0.00055788 1.8983 0.0010959 2.8646 0.0016538 577.3176201851502 52.643 0.37354 46.908 46.726 47.099 -5.7345 48 20 3 0 0 0 0.0081437 2 33162 33162;33277 94.909 58.402 1 111940000 62316 2054 41579 42508 72580;72581 72580 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2132873535156 3 385.213246 1152.61791 1.6303 0.00062801 -1.4301 -0.0005509 0.20016 7.7106E-05 385.5471533058324 63.986 0.73816 57.81 57.279 58.017 -6.1757 61 40 2 0 0 0 0.19127 2 41459 41317;41459 22.658 9.1394 1 9110800 62317 2054 41579 42508 72582;72583 72583 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2138366699219 3 385.213246 1152.61791 1.097 0.00042257 -0.91666 -0.00035311 0.18032 6.9463E-05 385.2127624424269 66.063 0.70164 59.887 59.559 60.261 -6.1757 72 40 2 0 0 0 0.28023 2 43062 42783;43062 17.443 7.1274 1 11646000 62318 2054 41579 42508 72584;72585 72585 0.047705851658292886 SYLKDTKLW 9 Unmodified _SYLKDTKLW_ 0 0 0 ENSG00000102572|ENST00000539966|STK24;nc|ENSG00000102572|Q9Y6E0|STK24 ENSG00000102572|ENST00000539966|STK24 ENSG00000102572|ENST00000539966|STK24 MSMS AL20221201_MKP_PDAC_01 4 385.2133178710938 3 385.213246 1152.61791 NaN NaN NaN NaN NaN NaN NaN 64.738 1 58.563 58.063 59.063 -6.1757 0 0 0 0.19623 1 41969 41969 23.801 4.1751 1 62319 2054 41579 42508 72586 72586 0.047705851658292886 SYLKEFIHI 9 Unmodified _SYLKEFIHI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8814086914062 3 383.881608 1148.623 0.6623 0.00025424 -0.37484 -0.00014389 0.28746 0.00011035 383.88133533096095 62.517 0.26756 62.029 61.872 62.14 -0.48764 33 12 3 0 0 0 0.042911 1 34050 34050 36.506 21.549 1 6179000 62320 4361 41580 42509 72587 72587 0.054628890284675435 SYLKEFIHI 9 Unmodified _SYLKEFIHI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3190307617188 2 575.318774 1148.623 0.79641 0.00045819 -1.0151 -0.00058399 -0.21866 -0.0001258 575.3185097722675 62.517 0.22674 62.029 61.872 62.099 -0.48764 15 10 2 0 0 0 0.032796 1 34074 34074 53.833 31.097 1 2237400 62321 4361 41580 42509 72588 72588 0.054628890284675435 SYLKEFIHI 9 Unmodified _SYLKEFIHI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3217163085938 2 575.318774 1148.623 1.1215 0.00064521 0.27514 0.00015829 1.3966 0.00080351 575.3186567971775 93.892 0.26194 87.717 87.636 87.898 -6.1757 25 14 3 0 0 0 0.010301 2 62166 62145;62166 79.596 39.639 1 22591000 62322 4361 41580 42509 72589;72590 72590 0.054628890284675435 SYLKEFIHI 9 Unmodified _SYLKEFIHI_ 0 0 0 ENSG00000131966|ENST00000254286|ACTR10;PSMA3-ACTR10|2|fusion;PSMA3-ACTR10|1|fusion;ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF ENSG00000131966|ENST00000254286|ACTR10 ENSG00000131966|ENST00000254286|ACTR10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8823852539062 3 383.881608 1148.623 1.4845 0.00056988 0.31703 0.0001217 1.8015 0.00069158 383.8816694933561 93.897 0.29454 87.722 87.603 87.898 -6.1757 38 16 3 0 0 0 0.042911 1 62165 62165 36.506 21.549 1 43906000 62323 4361 41580 42509 72591 72591 0.054628890284675435 SYLKKLKVKK 10 Unmodified _SYLKKLKVKK_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2812194824219 3 412.279703 1233.81728 NaN NaN NaN NaN NaN NaN NaN 75.789 1 75.312 74.812 75.812 -0.47714 0 0 0 1.0047 1 41488 41488 0.15932 0.075971 1 62324 5553 41581 42510 72592 72592 0.20972265184377648 SYLKLHDV 8 Unmodified _SYLKLHDV_ 0 0 0 ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF ENSG00000197386|ENST00000355072|HTT ENSG00000197386|ENST00000355072|HTT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7657775878906 2 487.768917 973.523281 0.22274 0.00010865 0.3378 0.00016477 0.56054 0.00027341 487.7689492687943 69.218 0.86924 68.737 68.443 69.312 -0.48071 87 37 4 0 0 0 0.79669 1 38047 38047 8.5933 3.3626 1 22530000 62325 9947 41582 42511 72593 72593 0.03546071414518792 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2095947265625 3 378.209836 1131.60768 -0.23267 -8.7997E-05 -1.2751 -0.00048225 -1.5078 -0.00057025 378.2098690293329 51.367 0.56983 51.313 51.067 51.637 -0.053871 115 28 5 0 0 0 0.047788 2 27804 27701;27804 45.7 19.971 1 108410000 62326 5575 41583 42512 72594;72595 72595 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8107299804688 2 566.811116 1131.60768 -0.0094118 -5.3347E-06 -0.69647 -0.00039477 -0.70588 -0.0004001 566.8111139591578 51.354 0.37277 51.3 51.107 51.479 -0.053871 63 18 4 0 0 0 0.0081887 2 27730 27730;27838 71.922 61.098 1 20141000 62327 5575 41583 42512 72596;72597 72596 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2103271484375 3 378.209836 1131.60768 1.3845 0.00052361 0.19398 7.3366E-05 1.5784 0.00059698 378.209891726454 72.657 0.43813 66.482 66.179 66.618 -6.1757 44 22 3 0 0 0 0.010301 2 47428 47428;47547 79.596 59.182 1 17995000 62328 5575 41583 42512 72598;72599 72598 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2108154296875 3 378.209836 1131.60768 1.3242 0.00050081 -0.012452 -4.7094E-06 1.3117 0.0004961 378.2099327389132 73.006 0.84457 66.83 66.6 67.445 -6.1757 75 41 2 0 0 0 0.0094097 4 47795 47671;47795;47916;48039 82.529 60.73 1 22183000 62329 5575 41583 42512 72600;72601;72602;72603 72601 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2108154296875 3 378.209836 1131.60768 1.4303 0.00054096 -0.86973 -0.00032894 0.56058 0.00021202 378.5434946124821 74.196 1.1415 68.021 67.464 68.606 -6.1757 75 58 2 0 0 0 0.014417 3 48426 48279;48426;48550 69.105 52.956 1 26443000 62330 5575 41583 42512 72604;72605;72606 72605 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20221201_MKP_PDAC_01 4 378.211181640625 3 378.209836 1131.60768 NaN NaN NaN NaN NaN NaN NaN 72.008 1 65.832 65.332 66.332 -6.1757 0 0 0 0.091025 1 47112 47112 45.7 34.9 1 62331 5575 41583 42512 72607 72607 0.04714022231269155 SYLKQLPHF 9 Unmodified _SYLKQLPHF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20221201_MKP_PDAC_01 4 566.8121337890625 2 566.811116 1131.60768 NaN NaN NaN NaN NaN NaN NaN 74.183 1 68.007 67.507 68.507 -6.1757 0 0 0 0.0053534 1 48502 48502 103.75 59.976 1 62332 5575 41583 42512 72608 72608 0.04714022231269155 SYLKRIFQL 9 Unmodified _SYLKRIFQL_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.9017944335938 3 389.901003 1166.68118 1.6032 0.00062508 -0.3316 -0.00012929 1.2716 0.00049579 389.9009451643858 95.467 0.23632 89.291 89.18 89.416 -6.1757 23 13 2 0 0 0 0.25681 1 63216 63216 29.841 11.467 1 21934000 62333 269 41584 42513 72609 72609 0.10450570673742732 SYLKRIFQL 9 Unmodified _SYLKRIFQL_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3480834960938 2 584.347866 1166.68118 1.2475 0.00072895 -0.65907 -0.00038512 0.58838 0.00034382 584.3474394107074 95.467 0.16904 89.291 89.23 89.399 -6.1757 17 9 2 0 0 0 0.0082548 1 63248 63248 96.367 50.346 1 13510000 62334 269 41584 42513 72610 72610 0.10450570673742732 SYLLFFFFCV 10 Unmodified _SYLLFFFFCV_ 0 0 0 REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.5355224609375 3 429.215711 1284.6253 -0.38191 -0.00016392 0.84388 0.00036221 0.46197 0.00019829 429.2162330430231 35.341 0.37082 35.119 34.852 35.223 -0.2224 26 16 2 0 0 0 0.23922 1 18375 18375 3.8763 0 1 2304200 + 62335 29616 41585 42514 72611 72611 -0.005623985580996305 SYLLIHQRI 9 Unmodified _SYLLIHQRI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000169981|ENST00000396056|ZNF35 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5611267089844 3 381.560869 1141.66078 0.37275 0.00014223 -0.89134 -0.0003401 -0.51859 -0.00019787 381.5607446418629 43.434 0.2165 43.418 43.311 43.528 -0.015667 21 9 3 0 0 0 0.12424 1 23287 23287 22.658 0 1 14737000 62336 6678 41586 42515 72612 72612 0.09561400013922139 SYLLIHQRI 9 Unmodified _SYLLIHQRI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000169981|ENST00000396056|ZNF35 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5606079101562 3 381.560869 1141.66078 -0.12892 -4.9192E-05 0.91491 0.00034909 0.78599 0.0002999 381.8955252141024 44.781 0.23748 44.759 44.678 44.916 -0.022064 18 11 2 0 0 0 0.07916 1 24036 24036 28.495 0 1 10782000 62337 6678 41586 42515 72613 72613 0.09561400013922139 SYLLIHQRI 9 Unmodified _SYLLIHQRI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000169981|ENST00000396056|ZNF35 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5613708496094 3 381.560869 1141.66078 1.4995 0.00057215 0.13558 5.173E-05 1.6351 0.00062388 381.56083118562026 48.442 0.28 43.208 43.053 43.333 -5.2339 25 16 2 0 0 0 0.095405 1 30115 30115 24.991 0 1 25484000 62338 6678 41586 42515 72614 72614 0.09561400013922139 SYLLIHQRI 9 Unmodified _SYLLIHQRI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000169981|ENST00000396056|ZNF35 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8380737304688 2 571.837665 1141.66078 1.1781 0.0006737 -0.41427 -0.0002369 0.76387 0.00043681 571.8376636106522 48.429 0.15742 43.195 43.124 43.282 -5.2339 14 9 2 0 0 0 0.010818 1 30174 30174 78.149 0 1 13258000 62339 6678 41586 42515 72615 72615 0.09561400013922139 SYLLIHQRI 9 Unmodified _SYLLIHQRI_ 0 0 0 ENST00000585568.5_1_19:44513139-44515613:+|nuORF;ENSG00000159882|ENST00000429154|ZNF230;ENSG00000169981|ENST00000396056|ZNF35 ENST00000585568.5_1_19:44513139-44515613:+|nuORF ENST00000585568.5_1_19:44513139-44515613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5612182617188 3 381.560869 1141.66078 1.2895 0.00049204 2.1123 0.00080597 3.4018 0.001298 381.895920908108 49.777 0.32755 44.238 44.125 44.452 -5.5391 53 20 4 0 0 0 0.10734 1 31067 31067 23.79 0 1 32051000 62340 6678 41586 42515 72616 72616 0.09561400013922139 SYLLPGMASF 10 Unmodified _SYLLPGMASF_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2706909179688 2 543.270435 1084.52632 0.42622 0.00023155 0.45504 0.00024721 0.88126 0.00047876 543.2705531824171 99.636 0.25185 93.46 93.306 93.558 -6.1757 29 15 2 0 0 0 0.24625 1 66329 66329 30.637 8.8899 1 145450000 62341 7748 41587 42516 72617 72617 -0.012564215229986075 SYLLQSTEL 9 Unmodified _SYLLQSTEL_ 0 0 0 ENSG00000100599|ENST00000216487|RIN3;ENST00000418924.6_1_14:93042630-93154594:+|nuORF;nc|ENSG00000100599|Q8TB24-4|RIN3 ENSG00000100599|ENST00000216487|RIN3 ENSG00000100599|ENST00000216487|RIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2769165039062 2 527.276772 1052.53899 0.36458 0.00019224 0.57046 0.00030079 0.93504 0.00049302 527.2769696929148 65.517 0.36486 65.517 65.394 65.759 0 22 14 2 0 0 0 0.047196 1 36549 36549 46.021 17.534 1 3701800 62342 1849 41588 42517 72618 72618 0.014823131409002599 SYLNSVQRL 9 Unmodified _SYLNSVQRL_ 0 0 0 ENSG00000136243|ENST00000258742|NUP42;nc|ENSG00000136243|O15504-2|NUP42 ENSG00000136243|ENST00000258742|NUP42 ENSG00000136243|ENST00000258742|NUP42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2955322265625 2 540.29583 1078.57711 0.070687 3.8192E-05 1.6975 0.00091716 1.7682 0.00095535 540.2966176567479 45.466 0.20657 45.438 45.302 45.509 -0.028011 14 10 2 0 0 0 0.009483 1 24436 24436 81.89 17.654 1 7332300 62343 4804 41589 42518 72619 72619 0.04096243846242942 SYLNTVERW 9 Unmodified _SYLNTVERW_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4;ENSG00000150361|ENST00000377844|KLHL1 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2938842773438 2 584.293288 1166.57202 -0.019619 -1.1463E-05 0.042643 2.4916E-05 0.023023 1.3452E-05 584.29368438205 54.737 0.33578 54.271 54.064 54.4 -0.46664 24 16 2 0 0 0 0.0086209 1 29687 29687 89.401 35.568 1 8158800 62344 2675 41590 42519 72620 72620 -0.004600600163939816 SYLNTVERW 9 Unmodified _SYLNTVERW_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4;ENSG00000150361|ENST00000377844|KLHL1 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2951049804688 2 584.293288 1166.57202 1.0208 0.00059644 0.15907 9.2946E-05 1.1799 0.00068939 584.7946391409351 60.554 0.58368 54.406 54.083 54.667 -6.1478 73 30 3 0 0 0 0.0081887 2 38858 38858;38980 93.166 36.989 1 56307000 62345 2675 41590 42519 72621;72622 72621 -0.004600600163939816 SYLPAPHA 8 Unmodified _SYLPAPHA_ 0 0 0 REV__ENSG00000173404|ENST00000310227|INSM1 REV__ENSG00000173404|ENST00000310227|INSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2212524414062 2 428.221603 854.428653 -0.46554 -0.00019936 0.25207 0.00010794 -0.21347 -9.1414E-05 428.22154227474584 26.375 0.21996 26.375 26.228 26.448 0 22 10 3 0 0 0 0.77907 1 13528 13528 10.183 0 1 3140400 + 62346 22727 41591 42520 72623 72623 -0.004384423368151147 SYLPAPHA 8 Unmodified _SYLPAPHA_ 0 0 0 REV__ENSG00000173404|ENST00000310227|INSM1 REV__ENSG00000173404|ENST00000310227|INSM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2217102050781 2 428.221603 854.428653 -0.33075 -0.00014163 0.46029 0.00019711 0.12954 5.5474E-05 428.22181637612385 29.141 0.21879 29.141 29.043 29.262 0 20 10 3 0 0 0 0.77907 1 15072 15072 10.183 0 1 2416800 + 62347 22727 41591 42520 72624 72624 -0.004384423368151147 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7611083984375 2 537.760758 1073.50696 0.32748 0.00017611 -0.33796 -0.00018174 -0.010477 -5.6339E-06 537.7603637093455 90.669 0.37746 90.175 89.991 90.368 -0.49458 67 21 4 0 0 0 0.2001 2 49501 49501;49606 23.148 6.2061 1 17475000 62348 6860 41592 42521 72625;72626 72625 -0.026850545422576033 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.761474609375 2 537.760758 1073.50696 0.91141 0.00049012 -1.636 -0.0008798 -0.72463 -0.00038968 538.2608696453767 99.441 0.31641 93.265 93.144 93.46 -6.1757 59 20 5 0 0 0 0.06187 2 66176 66176;66359 42.095 11.87 1 341710000 62349 6860 41592 42521 72627;72628 72627 -0.026850545422576033 SYLPFTEAF 9 Unmodified _SYLPFTEAF_ 0 0 0 nc|ENSG00000162430|Q9NZV5-2|SELENON;ENSG00000162430|ENST00000361547|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON nc|ENSG00000162430|Q9NZV5-2|SELENON MULTI-MSMS AL20221201_MKP_PDAC_01 4 1074.196655273438 1 1074.51424 1073.50696 0.86481 0.00092925 -1.9096 -0.0020519 -1.0448 -0.0011226 1075.5136336623552 99.448 0.23618 93.272 93.144 93.38 -6.1757 38 15 4 0 0 0 6.791399999999999E-21 1 66183 66183 196.65 139.18 1 193860000 62350 6860 41592 42521 72629 72629 -0.026850545422576033 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(50)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7703857421875 2 547.770603 1093.52665 0.39303 0.00021529 -0.43782 -0.00023983 -0.044789 -2.4534E-05 547.7707620463393 61.415 0.52717 61.415 61.045 61.572 0 64 23 4 0 0 0 0.040472 2 34140 34140;34239 49.669 27.922 1 4173300 62351 9914;16343 41593 42522 72630;72631 72630 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(50)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.771240234375 2 547.770603 1093.52665 0.090812 4.9744E-05 -0.40465 -0.00022165 -0.31384 -0.00017191 547.7704130383271 61.72 0.33727 61.232 60.988 61.325 -0.48764 64 15 5 0 0 0 0.040472 2 33543 33543;33643 49.669 27.922 1 318760000 62352 9914;16343 41593 42522 72632;72633 72632 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(40)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7703247070312 2 547.770603 1093.52665 0.31862 0.00017453 -0.75381 -0.00041292 -0.43519 -0.00023839 547.770243504124 61.92 0.2872 61.432 61.305 61.592 -0.48764 58 13 5 0 0 0 0.068777 1 33743 33743 40.449 24.601 1 254990000 62353 9914;16343 41593 42522 72634 72634 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(40)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7708129882812 2 547.770603 1093.52665 0.30361 0.00016631 -0.42232 -0.00023133 -0.1187 -6.5022E-05 547.7704398974186 61.284 0.29985 61.241 61.044 61.344 -0.04351 64 14 6 0 0 0 0.068777 2 33383 33383;33485 40.449 24.601 1 669840000 62354 9914;16343 41593 42522 72635;72636 72635 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(40)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7703247070312 2 547.770603 1093.52665 0.29305 0.00016052 -0.4026 -0.00022053 -0.10955 -6.0009E-05 547.7705079045105 61.499 0.5331 61.466 61.355 61.888 -0.032787 91 26 6 0 0 0 0.068777 1 33586 33586 40.449 24.601 1 594890000 62355 9914;16343 41593 42522 72637 72637 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(53)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7726440429688 2 547.770603 1093.52665 0.54563 0.00029888 0.67149 0.00036782 1.2171 0.0006667 547.7705880066559 66.894 1.6239 60.719 60.23 61.854 -6.1757 299 92 6 0 0 0 0.034897 5 43269 43269;43401;43533;43674;43803 52.693 29.625 1 545270000 62356 9914;16343 41593 42522 72638;72639;72640;72641;72642 72638 1598 -0.016370018031238942 SYLPLAHMF 9 Oxidation (M) _SYLPLAHM(Oxidation (M))F_ SYLPLAHM(1)F SYLPLAHM(50)F 0 0 1 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7708129882812 2 547.770603 1093.52665 0.8789 0.00048143 -0.27786 -0.0001522 0.60104 0.00032923 547.7706389605453 69.043 1.2652 62.867 62.42 63.685 -6.1757 221 69 4 0 0 0 0.040472 5 44959 44959;45075;45198;45326;45448 49.669 33.822 1 301010000 62357 9914;16343 41593 42522 72643;72644;72645;72646;72647 72643 1598 -0.016370018031238942 SYLPLAHMF 9 Unmodified _SYLPLAHMF_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.775390625 2 539.773145 1077.53174 0.65685 0.00035455 -1.496 -0.0008075 -0.83914 -0.00045295 539.7725511980649 81.082 0.39304 80.589 80.356 80.75 -0.49247 58 24 3 0 0 0 0.058206 2 44340 44340;44443 42.968 23.529 1 13201000 62358 9914;16343 41593 42523 72648;72649 72648 -0.003926979405150632 SYLPLAHMF 9 Unmodified _SYLPLAHMF_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.772216796875 2 539.773145 1077.53174 0.088082 4.7544E-05 -1.1109 -0.00059965 -1.0228 -0.00055211 539.7727353670389 80.363 0.43323 80.421 80.218 80.652 0.057587 70 21 5 0 0 0 0.040472 2 44342 44342;44447 49.669 32.727 1 318300000 62359 9914;16343 41593 42523 72650;72651 72650 -0.003926979405150632 SYLPLAHMF 9 Unmodified _SYLPLAHMF_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1080.72607421875 1 1078.53901 1077.53174 1.1728 0.0012649 -1.5716 -0.0016951 -0.39882 -0.00043014 1078.536719792662 97.634 0.355 91.458 91.332 91.687 -6.1757 59 22 3 0 0 0 0.0090851 1 64686 64686 85.357 55.132 1 107340000 62360 9914;16343 41593 42523 72652 72652 -0.003926979405150632 SYLPLAHMF 9 Unmodified _SYLPLAHMF_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-2|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5;nc|ENSG00000164398|Q9UKU0-3|ACSL6 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1078.53901 1077.53174 1.4471 0.0015607 -4.8858 -0.0052695 -3.4387 -0.0037088 1078.5352066144983 91.609 0.37085 91.646 91.381 91.751 0.036507 0.09383 -0.0032658 NaN 85.357 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 8367600 62361 9914;16343 41593 42523 -0.003926979405150632 SYLPLMCLLFC 11 Unmodified _SYLPLMCLLFC_ 0 0 0 REV__ENST00000394607.7_1_4:111026722-111119460:-|nuORF REV__ENST00000394607.7_1_4:111026722-111119460:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8822021484375 3 434.881346 1301.62221 NaN NaN NaN NaN NaN NaN NaN 99.234 1 99.041 98.541 99.541 -0.19321 0 0 0 0.93933 1 54180 54180 1.2148 0 1 + 62362 26450 41594 42524 72653 72653 -0.016537329987613703 SYLPRIVLL 9 Unmodified _SYLPRIVLL_ 0 0 0 ENST00000482857.5_1_2:33740203-33741790:+|nuORF;nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3 ENST00000482857.5_1_2:33740203-33741790:+|nuORF ENST00000482857.5_1_2:33740203-33741790:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3397216796875 2 537.33951 1072.66447 -0.17838 -9.5848E-05 -0.81994 -0.00044059 -0.99832 -0.00053643 537.3394145226581 84.76 0.2498 84.823 84.679 84.929 0.063179 16 10 2 0 0 0 0.062454 1 46902 46902 41.956 7.8531 1 18127000 62363 6207 41595 42525 72654 72654 0.13104069787800654 SYLPTAERL 9 Unmodified _SYLPTAERL_ 0 0 0 ENSG00000173227|ENST00000527043|SYT12 ENSG00000173227|ENST00000527043|SYT12 ENSG00000173227|ENST00000527043|SYT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2841186523438 2 525.284931 1048.55531 0.44686 0.00023473 3.3521 0.0017608 3.7989 0.0019955 525.2854735378505 47.088 0.36754 47.088 46.901 47.269 0 54 17 5 0 0 0 0.060956 1 25729 25729 53.833 13.875 1 14431000 62364 8303 41596 42526 72655 72655 0.032974390976505674 SYLPTAERL 9 Unmodified _SYLPTAERL_ 0 0 0 ENSG00000173227|ENST00000527043|SYT12 ENSG00000173227|ENST00000527043|SYT12 ENSG00000173227|ENST00000527043|SYT12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7869262695312 2 525.284931 1048.55531 0.77855 0.00040896 1.7909 0.00094072 2.5694 0.0013497 525.285954642345 53.102 0.37659 47.298 47.105 47.481 -5.8042 32 21 2 0 0 0 0.21589 1 33570 33570 22.736 3.2973 1 39274000 62365 8303 41596 42526 72656 72656 0.032974390976505674 SYLPWFEVF 9 Unmodified _SYLPWFEVF_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-7|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.292724609375 2 594.292225 1186.5699 0.50546 0.00030039 -0.37413 -0.00022234 0.13133 7.8048E-05 594.2919816172005 102.07 0.10689 95.896 95.833 95.939 -6.1757 10 4 3 0 0 0 0.2143 1 68512 68512 21.747 8.7042 1 19192000 62366 3442 41597 42527 72657 72657 -0.015924887542041688 SYLQFDPSF 9 Unmodified _SYLQFDPSF_ 0 0 0 REV__ENSG00000166025|ENST00000433060|AMOTL1 REV__ENSG00000166025|ENST00000433060|AMOTL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.25634765625 2 552.25584 1102.49713 0.42127 0.00023265 2.7577 0.001523 3.179 0.0017556 552.257432866647 80.897 0.58835 80.897 80.649 81.238 0 40 29 2 0 0 0 0.54444 1 44970 44970 4.756 0.42677 1 555420 + 62367 22078 41598 42528 72658 72658 -0.05002242547629976 SYLQQNGVQNY 11 Unmodified _SYLQQNGVQNY_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.877197265625 3 438.542203 1312.60478 0.35133 0.00015407 -1.0622 -0.00046583 -0.7109 -0.00031176 438.5421456701639 54.436 0.36042 54.369 54.182 54.542 -0.066936 64 17 5 0 0 0 0.65108 2 29501 29501;29600 4.4062 0 1 59517000 62368 7461 41599 42529 72659;72660 72659 -0.039018976841816766 SYLQRLEVL 9 Unmodified _SYLQRLEVL_ 0 0 0 nc|ENSG00000127452|Q9NXK8-2|FBXL12;ENSG00000127452|ENST00000247977|FBXL12 nc|ENSG00000127452|Q9NXK8-2|FBXL12 nc|ENSG00000127452|Q9NXK8-2|FBXL12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8217163085938 2 560.821681 1119.62881 NaN NaN NaN NaN NaN NaN NaN 66.133 1 65.65 65.15 66.15 -0.48323 0 0 0 0.25233 1 36104 36104 27.629 7.1752 1 62369 4009 41600 42530 72661 72661 0.07377987540144204 SYLQSLLLF 9 Unmodified _SYLQSLLLF_ 0 0 0 nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT nc|ENSG00000132305|Q16891-3|IMMT nc|ENSG00000132305|Q16891-3|IMMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3071899414062 2 542.307875 1082.6012 0.51623 0.00027995 -0.34725 -0.00018832 0.16898 9.1637E-05 542.3074870792059 101.83 0.093239 95.654 95.606 95.7 -6.1757 9 5 2 0 0 0 0.024189 1 68360 68360 74.929 6.8483 1 26103000 62370 4387 41601 42531 72662 72662 0.06320084279900584 SYLQYLEYL 9 Unmodified _SYLQYLEYL_ 0 0 0 nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 nc|ENSG00000100462|O14744-2|PRMT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.300537109375 2 596.300247 1190.58594 0.38142 0.00022744 0.5187 0.0003093 0.90013 0.00053675 596.3005512941179 100.7 0.12509 94.522 94.459 94.584 -6.1757 27 8 4 0 0 0 0.022193 1 67398 67398 61.357 39.611 1 178130000 62371 1832 41602 42532 72663 72663 -0.001728273079606879 SYLRMCKF 8 Unmodified _SYLRMCKF_ 0 0 0 ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2605590820312 2 524.259348 1046.50414 1.0338 0.00054197 1.1054 0.00057953 2.1392 0.0011215 524.2608416115951 74.862 0.81249 68.687 68.306 69.119 -6.1757 171 43 5 0 0 0 0.65867 3 48745 48745;48991;49156 20.871 0 1 71197000 62372 5522 41603 42533 72664;72665;72666 72664 -0.017249244723871016 SYLRQLELF 9 Unmodified _SYLRQLELF_ 0 0 0 ENST00000344823.9_1_16:3451289-3451709:+|nuORF ENST00000344823.9_1_16:3451289-3451709:+|nuORF ENST00000344823.9_1_16:3451289-3451709:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8192138671875 2 584.821681 1167.62881 1.1027 0.00064487 -2.8626 -0.0016741 -1.7599 -0.0010292 584.8192372918974 96.083 0.1452 89.907 89.862 90.007 -6.1757 12 8 2 0 0 0 0.033587 1 63701 63701 53.404 11.448 1 12114000 62373 12022 41604 42534 72667 72667 0.05169987540125476 SYLRRFNF 8 Unmodified _SYLRRFNF_ 0 0 0 ENST00000307851.8_1_5:156515978-156522366:-|nuORF ENST00000307851.8_1_5:156515978-156522366:-|nuORF ENST00000307851.8_1_5:156515978-156522366:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.74072265625 2 551.793258 1101.57196 NaN NaN NaN NaN NaN NaN NaN 78.38 1 78.38 77.88 78.88 0 0 0 0 0.97444 1 43558 43558 2.8892 0.58649 1 62374 11646 41605 42535 72668 72668 0.025239847742795973 SYLRYAFY 8 Unmodified _SYLRYAFY_ 0 0 0 REV__ENST00000507278.5_1_4:169086345-169108582:+|nuORF REV__ENST00000507278.5_1_4:169086345-169108582:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.2749633789062 2 541.768917 1081.52328 0.23799 0.00012894 -2.5914 -0.0014039 -2.3534 -0.001275 541.7676661869341 40.192 0.24943 35.663 35.608 35.858 -4.5294 26 19 2 0 0 0 8.7369 1 23941 23941 14.582 0 1 11872000 + 62375 18660 41606 42536 72669 72669 -0.014219285855006092 SYLSFLFSF 9 Unmodified _SYLSFLFSF_ 0 0 0 REV__ENST00000337339.6_1_X:11784030-11784237:+|nuORF REV__ENST00000337339.6_1_X:11784030-11784237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7784423828125 2 555.778951 1109.54335 0.48152 0.00026762 1.0136 0.00056334 1.4951 0.00083096 555.7792080316049 58.57 0.27924 58.57 58.489 58.768 0 26 11 3 0 0 0 0.28047 1 32630 32630 18.135 0 1 6522300 + 62376 25661 41607 42537 72670 72670 -0.007041776455253057 SYLSHSEQLVF 11 Unmodified _SYLSHSEQLVF_ 0 0 0 nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.325439453125 2 655.324785 1308.63502 0.36132 0.00023678 0.96519 0.00063251 1.3265 0.00086929 655.325342119585 60.148 0.23362 60.148 60.046 60.279 0 19 9 3 0 0 0 0.088819 1 33559 33559 43.772 29.866 1 1713100 62377 9311 41608 42538 72671 72671 -0.0069553901901144854 SYLSHSEQLVF 11 Unmodified _SYLSHSEQLVF_ 0 0 0 nc|ENSG00000184988|Q96A25-2|TMEM106A;ENSG00000184988|ENST00000612339|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A nc|ENSG00000184988|Q96A25-2|TMEM106A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.32470703125 2 655.324785 1308.63502 -0.12426 -8.1428E-05 0.62139 0.00040721 0.49713 0.00032578 655.3252652256609 60.711 0.24111 60.222 60.05 60.291 -0.48932 20 11 2 0 0 0 0.028752 1 33027 33027 55.503 38.39 1 5539000 62378 9311 41608 42538 72672 72672 -0.0069553901901144854 SYLSLPNNL 9 Unmodified _SYLSLPNNL_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7695007324219 2 510.771657 1019.52876 0.49111 0.00025085 -2.7306 -0.0013947 -2.2395 -0.0011439 510.76951552201473 73.506 0.14458 73.031 72.974 73.118 -0.47588 8 5 2 0 0 0 0.39863 1 40267 40267 12.532 3.9383 1 345440 62379 550 41609 42539 72673 72673 0.01977750206322071 SYLSLTPEQWK 11 Unmodified _SYLSLTPEQWK_ 0 0 0 nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2;nc|ENSG00000211675|P0CG04|IGLC1;nc|ENSG00000254709|B9A064|IGLL5 nc|ENSG00000222037|P0CF74|IGLC6 nc|ENSG00000222037|P0CF74|IGLC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2357482910156 3 451.234599 1350.68197 0.44297 0.00019989 2.2924 0.0010344 2.7353 0.0012343 451.23571455283457 52.44 0.19526 52.006 51.925 52.12 -0.43367 12 9 2 0 0 0 0.69838 1 28353 28353 4.4062 1.9714 1 2956800 62380 16525 41610 42540 72674 72674 0.020653205320968482 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8065185546875 2 588.806031 1175.59751 0.65311 0.00038456 -0.17501 -0.00010305 0.4781 0.00028151 588.8057865955448 65.066 0.36706 65.067 64.874 65.241 1.5259E-05 49 17 4 0 0 0 0.0081887 2 35703 35598;35703 93.166 54.99 1 37611000 62381 5714 41611 42541 72675;72676 72676 0.01673414506035442 SYLSRLQYF 9 Unmodified _SYLSRLQYF_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8081665039062 2 588.806031 1175.59751 0.77325 0.00045529 0.70207 0.00041338 1.4753 0.00086867 588.806795211697 83.21 1.2554 77.034 76.39 77.645 -6.1757 114 68 3 0 0 0 0.0093064 3 54820 54679;54820;55092 83.429 41.414 1 17937000 62382 5714 41611 42541 72677;72678;72679 72678 0.01673414506035442 SYLSSILRF 9 Unmodified _SYLSSILRF_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.302978515625 2 543.303124 1084.5917 -0.24254 -0.00013177 1.4683 0.00079771 1.2257 0.00066594 543.3043978563378 85.682 0.36467 85.743 85.514 85.878 0.061646 27 13 3 0 0 0 0.0086722 2 47418 47370;47418 88.954 41.205 1 51877000 62383 16395 41612 42542 72680;72681 72681 0.05278315994382865 SYLSYSKVW 9 Unmodified _SYLSYSKVW_ 0 0 0 REV__ENST00000379972.6_1_10:5995060-6019797:-|nuORF REV__ENST00000379972.6_1_10:5995060-6019797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2893676757812 2 566.787307 1131.56006 -0.12631 -7.159E-05 -1.8614 -0.001055 -1.9877 -0.0011266 566.7865794447023 78.374 0.48668 77.888 77.778 78.265 -0.48596 29 21 2 0 0 0 0.37578 1 42898 42898 19.257 6.7254 1 2308100 + 62384 19987 41613 42543 72682 72682 -0.0004567675957787287 SYLSYSKVW 9 Unmodified _SYLSYSKVW_ 0 0 0 REV__ENST00000379972.6_1_10:5995060-6019797:-|nuORF REV__ENST00000379972.6_1_10:5995060-6019797:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 566.787307 1131.56006 0.31158 0.0001766 -2.0185 -0.001144 -1.7069 -0.00096744 566.786030315334 78.005 0.31116 78.005 77.816 78.127 0 0.058229 -6.1694E-05 NaN 19.257 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 592800 + 62385 19987 41613 42543 -0.0004567675957787287 SYLTCHHRL 9 Carbamidomethyl (C) _SYLTC(Carbamidomethyl (C))HHRL_ SYLTC(1)HHRL SYLTC(46)HHRL 0 1 0 ENSG00000160336|ENST00000684525|ZNF761 ENSG00000160336|ENST00000684525|ZNF761 ENSG00000160336|ENST00000684525|ZNF761 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.1982116699219 3 396.197713 1185.57131 0.69218 0.00027424 1.0387 0.00041151 1.7308 0.00068575 396.1985565130753 22.502 0.41022 19.724 19.462 19.872 -2.7784 43 22 3 0 0 0 0.047714 1 12081 12081 45.74 27.019 1 10446000 62386 6720 41614 42544 72683 72683 658 -0.014051779370902295 SYLTGAAIW 9 Unmodified _SYLTGAAIW_ 0 0 0 nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 nc|ENSG00000103249|P51798-2|CLCN7 MSMS AL20221201_MKP_PDAC_01 4 491.2557067871094 2 491.255643 980.496732 NaN NaN NaN NaN NaN NaN NaN 84.939 1 78.763 78.263 79.263 -6.1757 0 0 0 0.035065 1 55915 55915 64.236 37.353 1 62387 2118 41615 42545 72684 72684 0.005703825231762494 SYLTIHHRI 9 Unmodified _SYLTIHHRI_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-3|ZNF12;ENSG00000146587|ENST00000396912|RBAK ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5484924316406 3 380.548852 1138.62473 0.22463 8.5484E-05 -1.3175 -0.00050137 -1.0928 -0.00041588 380.5484393385987 26.871 0.19747 26.9 26.804 27.002 0.028664 19 8 3 0 0 0 0.15471 1 13980 13980 20.581 9.7814 1 18163000 62388 7218 41616 42546 72685 72685 0.06095942837077928 SYLTIHHRI 9 Unmodified _SYLTIHHRI_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-3|ZNF12;ENSG00000146587|ENST00000396912|RBAK ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5487976074219 3 380.548852 1138.62473 1.5405 0.00058625 -0.99005 -0.00037676 0.55049 0.00020949 380.54848062337106 30.481 0.37361 26.984 26.779 27.153 -3.497 47 18 3 0 0 0 0.06294 1 17174 17174 32.037 17.867 1 112170000 62389 7218 41616 42546 72686 72686 0.06095942837077928 SYLTIHHRI 9 Unmodified _SYLTIHHRI_ 0 0 0 ENSG00000164631|ENST00000405858|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;nc|ENSG00000164631|P17014-3|ZNF12;ENSG00000146587|ENST00000396912|RBAK ENSG00000164631|ENST00000405858|ZNF12 ENSG00000164631|ENST00000405858|ZNF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3198852539062 2 570.31964 1138.62473 1.2106 0.00069046 -1.2864 -0.00073366 -0.075756 -4.3205E-05 570.3189390904338 30.481 0.21814 26.984 26.895 27.113 -3.497 18 10 2 0 0 0 0.0071894 1 17192 17192 111.29 71.048 1 22226000 62390 7218 41616 42546 72687 72687 0.06095942837077928 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4630126953125 1 928.462204 927.454927 0.70159 0.0006514 -0.29044 -0.00026966 0.41115 0.00038174 928.4617925253547 49.804 0.38039 49.804 49.629 50.009 0 49 17 4 0 0 0 0.0041763 1 27467 27467 120.45 65.677 1 36861000 62391 2211 41617 42547 72688 72688 -0.011702179559961223 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7349853515625 2 464.73474 927.454927 0.93005 0.00043223 -0.5657 -0.0002629 0.36435 0.00016933 464.734411082314 49.82 0.33833 49.82 49.671 50.009 0 52 15 4 0 0 0 0.06187 1 27495 27495 42.095 18.946 1 59863000 62392 2211 41617 42547 72689 72689 -0.011702179559961223 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4641723632812 1 928.462204 927.454927 0.77875 0.00072304 0.51766 0.00048063 1.2964 0.0012037 928.4625828344747 50.277 0.17955 49.885 49.772 49.952 -0.3923 15 8 2 0 0 0 0.031062 1 27046 27046 54.774 29.374 1 1665100 62393 2211 41617 42547 72690 72690 -0.011702179559961223 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7353820800781 2 464.73474 927.454927 NaN NaN NaN NaN NaN NaN NaN 50.288 1 49.896 49.396 50.396 -0.3923 0 0 0 0.46757 1 27078 27078 16.942 3.4344 1 62394 2211 41617 42547 72691 72691 -0.011702179559961223 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4631958007812 1 928.462204 927.454927 0.8026 0.00074519 0.074235 6.8925E-05 0.87684 0.00081411 928.4622667488924 57.734 0.40906 51.707 51.496 51.905 -6.0275 40 22 2 0 0 0 0.0041763 2 36969 36838;36969 120.45 65.677 1 88849000 62395 2211 41617 42547 72692;72693 72693 -0.011702179559961223 SYLTSASSL 9 Unmodified _SYLTSASSL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7349243164062 2 464.73474 927.454927 0.76018 0.00035328 -0.64119 -0.00029799 0.11898 5.5296E-05 464.73463279714275 57.756 0.4611 51.729 51.48 51.941 -6.0275 51 25 3 0 0 0 0.012148 2 36891 36891;37021 74.423 34.465 1 137450000 62396 2211 41617 42547 72694;72695 72694 -0.011702179559961223 SYLTVHKRI 9 Unmodified _SYLTVHKRI_ 0 0 0 nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557;nc|ENSG00000197134|Q9Y2Q1-4|ZNF257;nc|ENSG00000197134|Q9Y2Q1-3|ZNF257;nc|ENSG00000197134|Q9Y2Q1-2|ZNF257;ENSG00000197134|ENST00000594947|ZNF257 nc|ENSG00000130544|Q8N988|ZNF557 nc|ENSG00000130544|Q8N988|ZNF557 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8897399902344 3 372.888986 1115.64513 0.50528 0.00018841 0.96969 0.00036159 1.475 0.00055 372.88955167644815 25.328 0.27898 22.445 22.289 22.568 -2.8831 38 16 3 0 0 0 0.08907 1 13834 13834 35.612 15.031 1 7089100 62397 4223 41618 42548 72696 72696 0.09193113496894512 SYLTVHKRI 9 Unmodified _SYLTVHKRI_ 0 0 0 nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557;nc|ENSG00000197134|Q9Y2Q1-4|ZNF257;nc|ENSG00000197134|Q9Y2Q1-3|ZNF257;nc|ENSG00000197134|Q9Y2Q1-2|ZNF257;ENSG00000197134|ENST00000594947|ZNF257 nc|ENSG00000130544|Q8N988|ZNF557 nc|ENSG00000130544|Q8N988|ZNF557 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.888986 1115.64513 0.11443 4.2668E-05 0.86579 0.00032284 0.98021 0.00036551 372.8894649049846 22.094 0.16575 22.108 21.991 22.157 0.013798 -0.16831 -7.3001E-05 NaN 35.612 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1140100 62398 4223 41618 42548 0.09193113496894512 SYLVDTEID 9 Unmodified _SYLVDTEID_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1670837402344 3 352.169484 1053.48662 -0.052064 -1.8336E-05 -3.7659 -0.0013263 -3.818 -0.0013446 352.16821253135964 71.927 0.17075 71.927 71.861 72.032 0 12 7 2 0 0 0 0.47846 1 40055 40055 8.7454 0 1 904210 + 62399 24019 41619 42549 72697 72697 -0.037982699927397334 SYLVDTEID 9 Unmodified _SYLVDTEID_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 352.169484 1053.48662 -0.052064 -1.8336E-05 -3.7659 -0.0013263 -3.818 -0.0013446 352.16821253135964 71.927 0.17075 71.927 71.861 72.032 0 0 0 NaN 8.7454 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 904210 + 62400 24019 41619 42549 -0.037982699927397334 SYLVHGGKAL 10 Unmodified _SYLVHGGKAL_ 0 0 0 ENST00000490635.1_1_X:54026257-54040884:-|nuORF;nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8 ENST00000490635.1_1_X:54026257-54040884:-|nuORF ENST00000490635.1_1_X:54026257-54040884:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7977294921875 2 522.795466 1043.57638 1.1974 0.00062598 -0.12754 -6.6675E-05 1.0698 0.0005593 522.7953504321442 60.692 0.91262 54.544 54.142 55.055 -6.1478 134 48 4 0 0 0 0.16524 1 38914 38914 37.974 1.9298 1 345010000 62401 8273 41620 42550 72698 72698 0.056334491971938405 SYLVIHERI 9 Unmodified _SYLVIHERI_ 0 0 0 nc|ENSG00000198182|Q96SK3-2|ZNF607;nc|ENSG00000198182|Q96SK3-3|ZNF607;ENSG00000198182|ENST00000355202|ZNF607 nc|ENSG00000198182|Q96SK3-2|ZNF607 nc|ENSG00000198182|Q96SK3-2|ZNF607 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.32373046875 2 565.321848 1128.62914 2.4894 0.0014073 0.88008 0.00049753 3.3695 0.0019049 565.3223580750326 95.653 0.25389 95.657 95.51 95.764 0.004158 15 9 2 0 0 0 0.36964 1 53157 53157 13.906 4.5229 1 1457700 62402 10059 41621 42551 72699 72699 0.0699740725999618 SYLVLHQKI 9 Unmodified _SYLVLHQKI_ 0 0 0 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5533752441406 3 367.553603 1099.63898 0.025353 9.3187E-06 -0.13474 -4.9523E-05 -0.10938 -4.0204E-05 367.5536021484746 41.279 0.18053 40.975 40.887 41.067 -0.30304 15 8 2 0 0 0 0.16226 1 21867 21867 38.176 29.43 1 3658800 62403 7693 41622 42552 72700 72700 0.09314595265368553 SYLVLHQKI 9 Unmodified _SYLVLHQKI_ 0 0 0 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5538635253906 3 367.553603 1099.63898 0.216 7.9392E-05 1.0505 0.00038611 1.2665 0.0004655 367.553943613995 40.942 0.42679 40.94 40.689 41.115 -0.0017929 31 20 2 0 0 0 0.070838 1 21872 21872 29.841 20.864 1 4151100 62404 7693 41622 42552 72701 72701 0.09314595265368553 SYLVLHQKI 9 Unmodified _SYLVLHQKI_ 0 0 0 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 ENSG00000167981|ENST00000301744|ZNF597 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.5543518066406 3 367.553603 1099.63898 1.0697 0.00039317 0.99758 0.00036666 2.0673 0.00075983 367.5536353069051 45.431 0.52304 40.476 40.146 40.669 -4.9549 63 35 3 0 0 0 0.042911 1 27887 27887 43.772 34.796 1 19229000 62405 7693 41622 42552 72702 72702 0.09314595265368553 SYMASDRTY 9 Unmodified _SYMASDRTY_ 0 0 0 ENSG00000204524|ENST00000414468|ZNF805;nc|ENSG00000204524|Q5CZA5-2|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 MSMS AL20221201_MKP_PDAC_01 4 365.1598510742188 3 365.158813 1092.45461 NaN NaN NaN NaN NaN NaN NaN 62.727 1 56.551 56.051 57.051 -6.1757 0 0 0 0.84021 1 40493 40493 2.7352 0.23671 1 62406 10297 41623 42553 72703 72703 -0.08791960947496591 SYMDRQPNL 9 Oxidation (M) _SYM(Oxidation (M))DRQPNL_ SYM(1)DRQPNL SYM(62)DRQPNL 0 0 1 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2612915039062 2 570.26113 1138.50771 -0.25038 -0.00014278 -0.70841 -0.00040398 -0.95879 -0.00054676 570.2610639050878 26.472 0.5241 26.472 26.175 26.699 0 113 25 6 0 0 0 0.021948 3 13593 13491;13593;13697 61.602 49.07 1 24376000 62407 10258 41624 42554 72704;72705;72706 72705 1668 -0.056005831648462845 SYMDRQPNL 9 Oxidation (M) _SYM(Oxidation (M))DRQPNL_ SYM(1)DRQPNL SYM(83)DRQPNL 0 0 1 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.261962890625 2 570.26113 1138.50771 0.66439 0.00037888 -0.25964 -0.00014806 0.40475 0.00023082 570.2612287386631 29.803 0.56514 26.502 26.285 26.85 -3.3016 63 28 3 0 0 0 0.0093064 3 16704 16704;16816;16935 83.429 60.692 1 52478000 62408 10258 41624 42554 72707;72708;72709 72707 1668 -0.056005831648462845 SYMDRQPNL 9 Unmodified _SYMDRQPNL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2640991210938 2 562.263673 1122.51279 0.76059 0.00042765 1.0184 0.00057259 1.779 0.0010002 562.2638395892669 39.664 0.65266 35.213 34.796 35.449 -4.4509 82 40 4 0 0 0 0.040683 1 23562 23562 49.554 33.405 1 156260000 62409 10258 41624 42555 72710 72710 -0.04356279302214716 SYMDVSRNRL 10 Unmodified _SYMDVSRNRL_ 0 0 0 ENSG00000081913|ENST00000262719|PHLPP1;nc|ENSG00000081913|O60346-2|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 ENSG00000081913|ENST00000262719|PHLPP1 MSMS AL20221201_MKP_PDAC_01 4 414.2095947265625 3 414.208278 1239.60301 NaN NaN NaN NaN NaN NaN NaN 38.405 1 34.037 33.537 34.537 -4.3689 0 0 0 0.91092 1 22649 22649 7.4771 2.0744 1 62410 1334 41625 42556 72711 72711 -0.007212299738057482 SYMEEETLL 9 Unmodified _SYMEEETLL_ 0 0 0 REV__ENSG00000122733|ENST00000242315|PHF24 REV__ENSG00000122733|ENST00000242315|PHF24 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2860107421875 2 557.752272 1113.48999 0.32273 0.00018001 -3.9973 -0.0022295 -3.6746 -0.0020495 557.7472545700057 61.938 0.39341 61.938 61.728 62.122 0 29 16 3 0 0 0 0.18521 1 34519 34519 16.942 4.4107 1 1929100 + 62411 19357 41626 42557 72712 72712 -0.06221343210336272 SYMEGTGNMF 10 Unmodified _SYMEGTGNMF_ 0 0 0 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4844055175781 3 379.48442 1135.43143 0.36169 0.00013726 0.5313 0.00020162 0.893 0.00033888 379.4845430434197 59.903 0.30989 59.903 59.736 60.046 0 25 14 2 0 0 0 0.6966 1 33347 33347 3.3196 1.8645 1 3034300 62412 7936 41627 42558 72713 72713 -0.13086723056449046 SYMEGTGNMF 10 Unmodified _SYMEGTGNMF_ 0 0 0 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 ENSG00000169992|ENST00000302926|NLGN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.48442 1135.43143 0.047038 1.785E-05 0.37871 0.00014372 0.42575 0.00016157 379.48437495025945 60.295 0.23676 59.804 59.69 59.927 -0.49079 -0.049542 -0.0001074 NaN 3.3196 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3998400 62413 7936 41627 42558 -0.13086723056449046 SYMESVVTF 9 Unmodified _SYMESVVTF_ 0 0 0 ENSG00000141376|ENST00000407086|BCAS3;nc|ENSG00000141376|Q9H6U6|BCAS3;nc|ENSG00000141376|Q9H6U6-7|BCAS3;nc|ENSG00000141376|Q9H6U6-3|BCAS3;nc|ENSG00000141376|Q9H6U6-8|BCAS3;ENST00000593004.5_1_17:58756818-58797523:+|nuORF;ENST00000591371.5_1_17:58756818-58786882:+|nuORF;ENST00000589916.5_1_17:58756818-58885438:+|nuORF ENSG00000141376|ENST00000407086|BCAS3 ENSG00000141376|ENST00000407086|BCAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7440185546875 2 531.74425 1061.47395 1.0677 0.00056772 -1.703 -0.00090554 -0.6353 -0.00033782 531.7434909066945 79.926 0.40593 73.75 73.518 73.924 -6.1757 40 24 2 0 0 0 0.016184 2 52347 52347;52479 67.344 44.195 1 17873000 62414 5319 41628 42559 72714;72715 72714 -0.05433004656606499 SYMGHFDLL 9 Unmodified _SYMGHFDLL_ 0 0 0 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7517700195312 2 541.75241 1081.49027 0.085428 4.6281E-05 -0.62143 -0.00033666 -0.536 -0.00029038 541.7522853939536 70.152 0.28909 70.152 70.067 70.356 0 48 19 4 0 0 0 0.07916 2 39058 39058;39162 37.974 22.127 1 6780400 62415 7934 41629 42560 72716;72717 72716 -0.047218786998428186 SYMGHFDLL 9 Unmodified _SYMGHFDLL_ 0 0 0 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.751953125 2 541.75241 1081.49027 0.3142 0.00017022 -0.91785 -0.00049725 -0.60365 -0.00032703 541.7519149100007 70.026 0.38335 70.057 69.864 70.247 0.030922 45 19 3 0 0 0 0.031062 1 38513 38513 54.774 33.902 1 19356000 62416 7934 41629 42560 72718 72718 -0.047218786998428186 SYMGHFDLL 9 Unmodified _SYMGHFDLL_ 0 0 0 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.752685546875 2 541.75241 1081.49027 0.95829 0.00051916 -0.58706 -0.00031804 0.37123 0.00020111 541.7523299331217 87.324 3.0189 81.148 79.566 82.584 -6.1757 520 166 5 0 0 0 0.0082281 12 57433 57081;57196;57314;57433;57563;57691;57815;57937;58058;58179;58306;58533 92.822 56.214 1 867780000 62417 7934 41629 42560 72719;72720;72721;72722;72723;72724;72725;72726;72727;72728;72729;72730 72722 -0.047218786998428186 SYMGHFDLL 9 Unmodified _SYMGHFDLL_ 0 0 0 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7536010742188 2 541.75241 1081.49027 0.95839 0.00051921 1.4857 0.00080487 2.4441 0.0013241 541.7525063535998 88.837 0.92263 82.662 82.512 83.434 -6.1757 61 51 2 0 0 0 0.05447 3 58664 58664;58890;59027 43.858 13.049 1 9749800 62418 7934 41629 42560 72731;72732;72733 72731 -0.047218786998428186 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(61)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.751220703125 2 549.749867 1097.48518 0.31373 0.00017247 -0.38373 -0.00021096 -0.070005 -3.8485E-05 549.7497808500891 59.98 0.40946 59.927 59.694 60.103 -0.053062 70 20 5 0 0 0 0.022193 2 32618 32618;32717 61.357 38.209 1 85259000 62419 7934 41629 42561 72734;72735 72734 1354 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(71)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.749755859375 2 549.749867 1097.48518 0.177 9.7304E-05 -1.3456 -0.00073974 -1.1686 -0.00064244 549.749694259136 65.508 0.78732 59.332 59 59.787 -6.1757 175 45 5 0 0 0 0.013323 3 42502 42377;42502;42628 71.134 49.387 1 1669099999.9999998 62420 7934 41629 42561 72736;72737;72738 72737 1354 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(61)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7506103515625 2 549.749867 1097.48518 0.70625 0.00038826 -1.0681 -0.00058716 -0.3618 -0.0001989 549.7497406148806 66.116 0.65954 59.94 59.709 60.368 -6.1757 100 37 3 0 0 0 0.022193 3 43042 42902;43042;43173 61.357 35.53 1 59815000 62421 7934 41629 42561 72739;72740;72741 72740 1354 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(71)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7489013671875 2 549.749867 1097.48518 0.53521 0.00029423 -1.1631 -0.0006394 -0.62787 -0.00034517 549.7498407042211 66.851 1.0413 60.676 60.298 61.339 -6.1757 148 58 4 0 0 0 0.013323 2 43311 43311;43442 71.134 42.647 1 85968000 62422 7934 41629 42561 72742;72743 72742 1354 -0.059661825624516496 SYMGHFDLL 9 Oxidation (M) _SYM(Oxidation (M))GHFDLL_ SYM(1)GHFDLL SYM(64)GHFDLL 0 0 1 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 ENSG00000169976|ENST00000367569|SF3B5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7498168945312 2 549.749867 1097.48518 0.58003 0.00031887 -0.29214 -0.00016061 0.28788 0.00015826 549.7495791888798 68.02 0.87251 61.845 61.402 62.275 -6.1757 129 50 4 0 0 0 0.019303 2 44308 44162;44308 64.236 46.09 1 94549000 62423 7934 41629 42561 72744;72745 72745 1354 -0.059661825624516496 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(85)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7499389648438 2 525.749867 1049.48518 0.34181 0.00017971 0.41116 0.00021617 0.75298 0.00039588 525.7502091119484 35.784 0.27937 35.784 35.635 35.914 0 47 13 4 0 0 0 0.0090851 1 18899 18899 85.357 47.206 1 31834000 62424 7698 41630 42562 72746 72746 1315 -0.037581825624556586 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(74)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7498168945312 2 525.749867 1049.48518 0.66484 0.00034954 -1.4134 -0.00074308 -0.74854 -0.00039354 525.7492963264208 36.154 0.25837 36.154 36.01 36.269 0 39 12 4 0 0 0 0.012148 1 19141 19141 74.423 42.117 1 46943000 62425 7698 41630 42562 72747 72747 1315 -0.037581825624556586 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(74)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7491455078125 2 525.749867 1049.48518 -0.56178 -0.00029535 0.26687 0.00014031 -0.29491 -0.00015505 525.7500950301194 35.991 0.23129 35.769 35.621 35.852 -0.2224 17 10 2 0 0 0 0.012148 1 18833 18833 74.423 43.786 1 6987300 62426 7698 41630 42562 72748 72748 1315 -0.037581825624556586 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(74)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.251708984375 2 525.749867 1049.48518 -0.57791 -0.00030383 0.6657 0.00034999 0.087798 4.616E-05 525.750370099295 36.396 0.49891 36.146 35.906 36.405 -0.2497 41 22 3 0 0 0 0.012148 1 19073 19073 74.423 45.341 1 9775000 62427 7698 41630 42562 72749 72749 1315 -0.037581825624556586 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(74)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7494506835938 2 525.749867 1049.48518 0.56896 0.00029913 0.47685 0.0002507 1.0458 0.00054983 525.7499786353368 40.47 0.29307 35.94 35.742 36.035 -4.5294 42 17 3 0 0 0 0.012148 1 24108 24108 74.423 44.198 1 33060000 62428 7698 41630 42562 72750 72750 1315 -0.037581825624556586 SYMPTVSHL 9 Oxidation (M) _SYM(Oxidation (M))PTVSHL_ SYM(1)PTVSHL SYM(74)PTVSHL 0 0 1 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7499389648438 2 525.749867 1049.48518 1.157 0.00060827 -0.2225 -0.00011698 0.93445 0.00049129 525.7498235759009 41.051 0.47495 36.443 36.211 36.686 -4.6079 68 29 3 0 0 0 0.012148 1 24517 24517 74.423 51.274 1 39663000 62429 7698 41630 42562 72751 72751 1315 -0.037581825624556586 SYMPTVSHL 9 Unmodified _SYMPTVSHL_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.752197265625 2 517.75241 1033.49027 NaN NaN NaN NaN NaN NaN NaN 48.718 1 48.346 47.846 48.846 -0.37172 0 0 0 0.050352 1 26156 26156 57.471 27.247 1 62430 7698 41630 42563 72752 72752 -0.025138786998240903 SYMPTVSHL 9 Unmodified _SYMPTVSHL_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7525634765625 2 517.75241 1033.49027 0.90371 0.0004679 -0.87255 -0.00045176 0.031161 1.6134E-05 517.7521102908886 54.511 0.51513 48.645 48.366 48.881 -5.8653 87 31 4 0 0 0 0.016184 2 34508 34508;34648 67.344 37.119 1 164230000 62431 7698 41630 42563 72753;72754 72753 -0.025138786998240903 SYMPTVSHL 9 Unmodified _SYMPTVSHL_ 0 0 0 nc|ENSG00000168000|Q96G97-3|BSCL2;nc|ENSG00000168000|Q96G97|BSCL2;ENSG00000168000|ENST00000360796|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 nc|ENSG00000168000|Q96G97-3|BSCL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 517.75241 1033.49027 -0.13606 -7.0444E-05 0.92094 0.00047682 0.78489 0.00040638 517.7514476993279 48.385 0.11996 48.385 48.351 48.47 0 -0.13032 0.0018276 NaN 67.344 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1229200 62432 7698 41630 42563 -0.025138786998240903 SYMWTINNF 9 Oxidation (M) _SYM(Oxidation (M))WTINNF_ SYM(1)WTINNF SYM(51)WTINNF 0 0 1 ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2608032226562 2 596.260599 1190.50665 0.73941 0.00044088 -0.39887 -0.00023783 0.34054 0.00020305 596.260552171064 75.612 0.3441 75.135 74.957 75.301 -0.47714 52 17 4 0 0 0 0.038285 1 41430 41430 50.855 42.945 1 8431800 62433 3565;5591 41631 42564 72755 72755 632 -0.08098797533739344 SYMWTINNF 9 Oxidation (M) _SYM(Oxidation (M))WTINNF_ SYM(1)WTINNF SYM(42)WTINNF 0 0 1 ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.261474609375 2 596.260599 1190.50665 0.097779 5.8302E-05 0.13522 8.0625E-05 0.233 0.00013893 596.2606782519998 75.048 0.40608 75.094 74.94 75.346 0.045959 55 19 4 0 0 0 0.06187 1 41352 41352 42.095 33.939 1 20957000 62434 3565;5591 41631 42564 72756 72756 632 -0.08098797533739344 SYMWTINNF 9 Unmodified _SYMWTINNF_ 0 0 0 ENSG00000121067|ENST00000504102|SPOP;ENST00000513080.5_1_17:47699309-47700178:-|nuORF;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP;ENSG00000144228|ENST00000280098|SPOPL ENSG00000121067|ENST00000504102|SPOP MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2626953125 2 588.263142 1174.51173 0.62745 0.00036911 -0.093541 -5.5026E-05 0.53391 0.00031408 588.2629898898523 93.575 0.92493 87.399 87.139 88.064 -6.1757 136 56 3 0 0 0 0.042911 4 61765 61765;61877;62007;62136 48.346 41.623 1 37288000 62435 3565;5591 41631 42565 72757;72758;72759;72760 72757 -0.06854493671130513 SYMYLYVL 8 Unmodified _SYMYLYVL_ 0 0 0 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 REV__nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2613525390625 2 526.262079 1050.50961 0.44578 0.0002346 -0.88044 -0.00046334 -0.43467 -0.00022875 526.2614360828087 77.962 0.54137 77.962 77.75 78.291 0 31 23 2 0 0 0 0.77907 1 43341 43341 10.183 0 1 724360 + 62436 19802 41632 42566 72761 72761 -0.013629224089299896 SYNAVLDTCI 10 Unmodified _SYNAVLDTCI_ 0 0 0 REV__nc|ENSG00000164176|O43854-2|EDIL3 REV__nc|ENSG00000164176|O43854-2|EDIL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.764892578125 2 549.760432 1097.50631 0.40639 0.00022342 -1.1943 -0.00065657 -0.7879 -0.00043315 550.2608109512472 94.067 0.35261 93.647 93.457 93.81 -0.42044 42 18 3 0 0 0 0.62068 1 51364 51364 10.074 2.1638 1 2028900 + 62437 21886 41633 42567 72762 72762 -0.038542172536153885 SYNCCSRNF 9 Unmodified _SYNCCSRNF_ 0 0 0 KRTAP13-4|p.S12F|1|0.2|ENSG00000186971|chr21:30430310-30430310|C/T|missense_variant;ENSG00000186971|ENST00000334068|KRTAP13-4;ENSG00000240432|ENST00000390690|KRTAP13-3 KRTAP13-4|p.S12F|1|0.2|ENSG00000186971|chr21:30430310-30430310|C/T|missense_variant KRTAP13-4|p.S12F|1|0.2|ENSG00000186971|chr21:30430310-30430310|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2144775390625 2 547.213126 1092.4117 NaN NaN NaN NaN NaN NaN NaN 58.924 1 58.434 57.934 58.934 -0.49079 0 0 0 0.82739 1 32052 32052 4.3292 0.38484 1 62438 9527 41634 42568 72763 72763 -0.13081054276585746 SYNDIYCRF 9 Carbamidomethyl (C) _SYNDIYC(Carbamidomethyl (C))RF_ SYNDIYC(1)RF SYNDIYC(54)RF 0 1 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2689208984375 2 619.268955 1236.52336 0.35096 0.00021734 0.23251 0.00014399 0.58347 0.00036132 619.2693801955078 49.052 0.24959 49.052 48.986 49.236 0 25 11 3 0 0 0 0.032796 1 26975 26975 53.833 40.218 1 4479100 62439 4859 41635 42569 72764 72764 499 -0.08544296647824012 SYNDIYCRF 9 Carbamidomethyl (C) _SYNDIYC(Carbamidomethyl (C))RF_ SYNDIYC(1)RF SYNDIYC(89)RF 0 1 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2689819335938 2 619.268955 1236.52336 0.74619 0.00046209 -1.2082 -0.00074821 -0.46202 -0.00028611 619.2685889779067 49.467 0.25433 49.075 48.964 49.218 -0.3923 30 12 3 0 0 0 0.0086209 1 26577 26577 89.401 71.028 1 11941000 62440 4859 41635 42569 72765 72765 499 -0.08544296647824012 SYNDIYCRF 9 Carbamidomethyl (C) _SYNDIYC(Carbamidomethyl (C))RF_ SYNDIYC(1)RF SYNDIYC(130)RF 0 1 0 ENST00000486372.1_1_9:132565440-132566668:+|nuORF;ENSG00000136816|ENST00000259339|TOR1B ENST00000486372.1_1_9:132565440-132566668:+|nuORF ENST00000486372.1_1_9:132565440-132566668:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2691040039062 2 619.268955 1236.52336 0.91043 0.0005638 -1.2785 -0.00079171 -0.36803 -0.00022791 619.2688022268997 55.077 0.52292 49.156 48.903 49.426 -5.9211 134 32 6 0 0 0 0.0017364 3 34887 34887;35028;35164 134.3 104.46 1 285230000 62441 4859 41635 42569 72766;72767;72768 72766 499 -0.08544296647824012 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.7675170898438 2 596.767103 1191.51965 -0.53482 -0.00031916 0.9683 0.00057785 0.43348 0.00025868 596.7676445094672 48.795 0.27257 48.795 48.638 48.91 0 35 12 4 0 0 0 0.047714 1 26767 26767 45.74 25.286 1 6507700 62442 1379 41636 42570 72769 72769 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7672119140625 2 596.767103 1191.51965 0.69598 0.00041534 -0.066837 -3.9886E-05 0.62914 0.00037545 596.7669659423273 55.213 0.2867 49.292 49.157 49.444 -5.9211 29 17 2 0 0 0 0.022461 1 35107 35107 61.09 30.453 1 24955000 62443 1379 41636 42570 72770 72770 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 596.767103 1191.51965 0.56251 0.00033569 1.2392 0.00073953 1.8017 0.0010752 596.7677692923274 49.205 0.18866 48.833 48.714 48.903 -0.37172 0.018898 0.00028196 NaN 45.74 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1032400 62444 1379 41636 42570 -0.06844643150020602 SYNDYVREF 9 Unmodified _SYNDYVREF_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 596.767103 1191.51965 0.82179 0.00049042 0.6465 0.00038581 1.4683 0.00087623 596.7666091157566 49.644 0.67468 49.596 49.412 50.087 -0.048824 0.15208 0.00050302 NaN 61.09 75 33 3 NaN NaN NaN NaN 0 NaN NaN 0 4127000 62445 1379 41636 42570 -0.06844643150020602 SYNEHWNYL 9 Unmodified _SYNEHWNYL_ 0 0 0 ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR ENST00000535739.5_1_12:6493425-6494510:+|nuORF ENST00000535739.5_1_12:6493425-6494510:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2693481445312 2 613.26727 1224.51999 0.8032 0.00049258 0.7122 0.00043677 1.5154 0.00092935 613.2677715317808 51.404 0.29251 51.404 51.208 51.5 0 36 12 4 0 0 0 0.0030184 1 28345 28345 126.57 94.26 1 9775200 62446 2779 41637 42571 72771 72771 -0.08329223430155253 SYNEHWNYL 9 Unmodified _SYNEHWNYL_ 0 0 0 ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR ENST00000535739.5_1_12:6493425-6494510:+|nuORF ENST00000535739.5_1_12:6493425-6494510:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7681884765625 2 613.26727 1224.51999 0.39943 0.00024496 -0.29087 -0.00017838 0.10856 6.6576E-05 613.2670977910899 51.931 0.26691 51.497 51.364 51.631 -0.43367 42 13 4 0 0 0 0.047788 1 27995 27995 45.7 18.071 1 23412000 62447 2779 41637 42571 72772 72772 -0.08329223430155253 SYNEHWNYL 9 Unmodified _SYNEHWNYL_ 0 0 0 ENST00000535739.5_1_12:6493425-6494510:+|nuORF;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR ENST00000535739.5_1_12:6493425-6494510:+|nuORF ENST00000535739.5_1_12:6493425-6494510:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.2721557617188 2 613.26727 1224.51999 0.75128 0.00046074 0.39062 0.00023956 1.1419 0.00070029 613.2671347906361 57.095 0.34613 51.119 50.941 51.287 -5.9769 55 20 4 0 0 0 0.014417 4 36433 36377;36410;36433;36565 69.105 43.706 1 174430000 62448 2779 41637 42571 72773;72774;72775;72776 72775 -0.08329223430155253 SYNELCQLLF 10 Carbamidomethyl (C) _SYNELC(Carbamidomethyl (C))QLLF_ SYNELC(1)QLLF SYNELC(42)QLLF 0 1 0 ENSG00000059378|ENST00000263549|PARP12;ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8094482421875 2 643.807913 1285.60127 2.2577 0.0014535 1.3546 0.00087207 3.6122 0.0023256 643.8089221132791 95.327 0.35378 95.331 95.106 95.46 0.004158 28 12 3 0 0 0 0.13297 1 52929 52929 41.956 33.21 1 2534900 62449 814 41638 42572 72777 72777 68 -0.0301028378241881 SYNELCQLLF 10 Carbamidomethyl (C) _SYNELC(Carbamidomethyl (C))QLLF_ SYNELC(1)QLLF SYNELC(110)QLLF 0 1 0 ENSG00000059378|ENST00000263549|PARP12;ENST00000467638.1_1_7:139757417-139762332:-|nuORF ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.8104858398438 2 643.807913 1285.60127 1.1769 0.00075772 0.13339 8.5878E-05 1.3103 0.00084359 643.8081111404871 100.14 0.22032 93.969 93.838 94.058 -6.1757 33 13 4 0 0 0 0.0015761 1 66868 66868 110.67 80.038 1 113490000 62450 814 41638 42572 72778 72778 68 -0.0301028378241881 SYNESETK 8 Unmodified _SYNESETK_ 0 0 0 ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B ENSG00000170759|ENST00000302418|KIF5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2124328613281 2 479.211629 956.408705 NaN NaN NaN NaN NaN NaN NaN 93.124 1 92.667 92.167 93.167 -0.4574 0 0 0 0.97444 1 50896 50896 2.3027 0.24298 1 62451 8019 41639 42573 72779 72779 -0.07124282858080733 SYNGKLYVF 9 Unmodified _SYNGKLYVF_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7792358398438 2 545.782025 1089.5495 NaN NaN NaN NaN NaN NaN NaN 56.748 1 56.263 55.763 56.763 -0.48554 0 0 0 0.074615 1 30831 30831 49.933 31.787 1 62452 8384 41640 42574 72780 72780 0.008303405859805935 SYNGKLYVF 9 Unmodified _SYNGKLYVF_ 0 0 0 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 ENSG00000174010|ENST00000328046|KLHL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7796630859375 2 545.782025 1089.5495 NaN NaN NaN NaN NaN NaN NaN 56.371 1 56.302 55.802 56.802 -0.068737 0 0 0 0.18351 1 30662 30662 32.786 18.88 1 62453 8384 41640 42574 72781 72781 0.008303405859805935 SYNHHQPLL 9 Unmodified _SYNHHQPLL_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.1891479492188 3 370.189324 1107.54614 -0.53274 -0.00019721 -0.12908 -4.7785E-05 -0.66182 -0.000245 370.18900396831543 26.449 0.26813 26.449 26.283 26.551 0 19 12 2 0 0 0 0.36964 1 13599 13599 13.615 7.8314 1 1242600 62454 4931 41641 42575 72782 72782 -0.003329094680111666 SYNKHLFVHI 10 Unmodified _SYNKHLFVHI_ 0 0 0 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 ENSG00000187079|ENST00000527636|TEAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2310180664062 3 419.89614 1256.66659 -0.14326 -6.0155E-05 0.18784 7.8873E-05 0.044577 1.8718E-05 419.896222114399 37.55 0.23009 37.567 37.479 37.71 0.01704 25 11 3 0 0 0 0.1899 1 19950 19950 34.932 29.635 1 4857300 62455 9533 41642 42576 72783 72783 0.048524985256108266 SYNLNYHKL 9 Unmodified _SYNLNYHKL_ 0 0 0 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5331420898438 3 384.532979 1150.57711 -0.6382 -0.00024541 1.1543 0.00044388 0.51615 0.00019848 384.867705986879 34.487 0.21283 34.487 34.384 34.597 0 25 10 3 0 0 0 0.23158 1 18188 18188 19.362 11.753 1 5952200 62456 8063 41643 42577 72784 72784 0.007842438462375867 SYNLNYHKL 9 Unmodified _SYNLNYHKL_ 0 0 0 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.532958984375 3 384.532979 1150.57711 -0.2675 -0.00010286 0.016833 6.4727E-06 -0.25067 -9.6391E-05 384.53287227619325 34.672 0.19311 34.481 34.371 34.564 -0.19131 19 8 3 0 0 0 0.039985 1 18121 18121 53.404 38.156 1 7446300 62457 8063 41643 42577 72785 72785 0.007842438462375867 SYNLNYHKL 9 Unmodified _SYNLNYHKL_ 0 0 0 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5333251953125 3 384.532979 1150.57711 1.114 0.00042837 -0.82225 -0.00031618 0.29175 0.00011219 384.5326555815513 38.323 0.3121 33.954 33.78 34.092 -4.3689 42 18 3 0 0 0 0.10734 1 22558 22558 23.79 16.181 1 45244000 62458 8063 41643 42577 72786 72786 0.007842438462375867 SYNLNYHKL 9 Unmodified _SYNLNYHKL_ 0 0 0 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.296875 2 576.29583 1150.57711 0.69963 0.0004032 1.8204 0.0010491 2.52 0.0014523 576.2969718331175 38.319 0.17417 33.95 33.884 34.058 -4.3689 16 10 2 0 0 0 0.078314 1 22604 22604 38.176 10.547 1 13186000 62459 8063 41643 42577 72787 72787 0.007842438462375867 SYNLNYHKL 9 Unmodified _SYNLNYHKL_ 0 0 0 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 ENSG00000171109|ENST00000471841|MFN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 384.532979 1150.57711 0.065848 2.5321E-05 -0.64053 -0.00024631 -0.57468 -0.00022098 384.8670386921411 34.428 0.17263 34.455 34.347 34.52 0.027401 -0.019057 -0.00096494 NaN 53.404 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 758520 62460 8063 41643 42577 0.007842438462375867 SYNNDQWTLIF 11 Unmodified _SYNNDQWTLIF_ 0 0 0 ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS ENSG00000040531|ENST00000046640|CTNS ENSG00000040531|ENST00000046640|CTNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.5535278320312 3 467.55422 1399.64083 -0.2966 -0.00013868 -1.5567 -0.00072783 -1.8533 -0.00086651 467.5536009495547 33.32 0.21864 33.161 33.028 33.247 -0.15918 20 8 3 0 0 0 0.69838 1 17359 17359 4.4062 1.9714 1 2724100 62461 651 41644 42578 72788 72788 -0.04300440507336134 SYNNDQWTLIF 11 Unmodified _SYNNDQWTLIF_ 0 0 0 ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS ENSG00000040531|ENST00000046640|CTNS ENSG00000040531|ENST00000046640|CTNS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 467.55422 1399.64083 -0.047158 -2.2049E-05 -0.54114 -0.00025301 -0.5883 -0.00027506 467.5539615890937 33.115 0.11925 33.144 33.067 33.186 0.029747 -0.0084593 0.00094455 NaN 4.4062 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 839170 62462 651 41644 42578 -0.04300440507336134 SYNNFFRMF 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ SYNNFFRM(1)F SYNNFFRM(110)F 0 0 1 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.2744140625 2 621.274041 1240.53353 1.0907 0.00067765 -1.3095 -0.00081358 -0.21879 -0.00013593 621.2734401935003 66.604 0.71619 66.613 66.398 67.114 0.0095596 121 34 6 0 0 0 0.0059585 3 36476 36476;36578;36685 114.65 98.5 1 368910000 62463 10558;8520 41645 42579 72789;72790;72791 72789 1446 -0.07711688922563553 SYNNFFRMF 9 Oxidation (M) _SYNNFFRM(Oxidation (M))F_ SYNNFFRM(1)F SYNNFFRM(140)F 0 0 1 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.273193359375 2 621.274041 1240.53353 0.18241 0.00011332 -0.56882 -0.00035339 -0.38641 -0.00024007 621.2740293196348 77.187 2.0784 71.011 69.769 71.847 -6.1757 322 116 4 0 0 0 0.00065891 10 49922 49808;49922;50042;50153;50265;50380;50498;50620;50737;50858 142.08 117.6 1 88280000 62464 10558;8520 41645 42579 72792;72793;72794;72795;72796;72797;72798;72799;72800;72801 72793 1446 -0.07711688922563553 SYNNFFRMF 9 Unmodified _SYNNFFRMF_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.278076171875 2 613.276583 1224.53861 1.9197 0.0011773 -0.17712 -0.00010862 1.7425 0.0010687 613.2766301671383 81.605 0.45992 81.665 81.425 81.885 0.059929 56 17 4 0 0 0 0.0061279 2 45081 45081;45186 139.14 123.89 1 28455000 62465 10558;8520 41645 42580 72802;72803 72802 -0.06467385059931985 SYNNFFRMF 9 Unmodified _SYNNFFRMF_ 0 0 0 ENSG00000175470|ENST00000455566|PPP2R2D;ENST00000490777.2_10:133754324-133769464:+|nuORF;nc|ENSG00000156475|Q00005-6|PPP2R2B;ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000175470|ENST00000455566|PPP2R2D;ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.2772216796875 2 613.276583 1224.53861 1.1247 0.00068974 0.027389 1.6797E-05 1.1521 0.00070654 613.2768863959561 97.883 0.35397 91.708 91.537 91.891 -6.1757 91 23 6 0 0 0 0.0033237 2 64795 64795;64927 149.91 125.89 1 712210000 62466 10558;8520 41645 42580 72804;72805 72804 -0.06467385059931985 SYNPAENAVLL 11 Unmodified _SYNPAENAVLL_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.8082885742188 2 595.806228 1189.5979 0.24904 0.00014838 -0.082319 -4.9046E-05 0.16672 9.9331E-05 595.8063071673313 66.579 0.35297 66.579 66.348 66.701 0 46 15 4 0 0 0 0.073778 2 37075 37075;37174 45.74 23.993 1 5450600 62467 3627 41646 42581 72806;72807 72806 0.010687894352258809 SYNPITHQL 9 Unmodified _SYNPITHQL_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7738037109375 2 536.774731 1071.53491 -0.05406 -2.9018E-05 2.0372 0.0010935 1.9831 0.0010645 536.776525900031 40.542 0.30761 40.542 40.432 40.739 0 37 16 3 0 0 0 0.009483 1 21784 21784 81.89 53.403 1 17519000 62468 7094 41647 42582 72808 72808 0.0020026843783398363 SYNPITHQL 9 Unmodified _SYNPITHQL_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7745971679688 2 536.774731 1071.53491 0.24679 0.00013247 -0.56872 -0.00030528 -0.32193 -0.0001728 536.7744717260213 40.984 0.31826 40.681 40.523 40.841 -0.30304 43 15 4 0 0 0 0.020973 1 21650 21650 62.573 40.826 1 19093000 62469 7094 41647 42582 72809 72809 0.0020026843783398363 SYNPITHQL 9 Unmodified _SYNPITHQL_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.773193359375 2 536.774731 1071.53491 0.64371 0.00034553 -1.2108 -0.00064994 -0.56711 -0.00030441 536.7731827607091 45.85 0.65764 40.895 40.669 41.327 -4.9549 85 43 3 0 0 0 0.0086209 2 28138 28138;28288 89.401 64.001 1 88066000 62470 7094 41647 42582 72810;72811 72810 0.0020026843783398363 SYNPLWLRI 9 Unmodified _SYNPLWLRI_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3251953125 2 581.324391 1160.63423 0.54145 0.00031476 -0.93224 -0.00054193 -0.39079 -0.00022717 581.3245114451737 80.332 0.20981 80.39 80.309 80.518 0.057587 21 9 3 0 0 0 0.012228 1 44396 44396 81.89 55.622 1 32098000 62471 932 41648 42583 72812 72812 0.06033711122586283 SYNPLWLRI 9 Unmodified _SYNPLWLRI_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3253173828125 2 581.324391 1160.63423 1.2617 0.00073344 0.3917 0.00022771 1.6534 0.00096114 581.3245876162382 96.777 0.30331 90.602 90.453 90.756 -6.1757 55 17 4 0 0 0 0.010301 2 64092 64092;64214 81.89 55.007 1 146750000 62472 932 41648 42583 72813;72814 72813 0.06033711122586283 SYNPPLPY 8 Unmodified _SYNPPLPY_ 0 0 0 REV__ENST00000528098.5_1_11:57182763-57193651:-|nuORF REV__ENST00000528098.5_1_11:57182763-57193651:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7347106933594 2 475.734543 949.454533 1.1496 0.0005469 0.38891 0.00018502 1.5385 0.00073192 475.734665110195 33.538 0.22642 29.553 29.488 29.714 -3.9853 12 12 2 0 0 0 0.61462 1 19269 19269 24.674 5.2349 1 9089900 + 62473 20012 41649 42584 72815 72815 -0.022215928852006073 SYNPSTNEW 9 Unmodified _SYNPSTNEW_ 0 0 0 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 ENSG00000087448|ENST00000381271|KLHL42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2302856445312 2 549.230353 1096.44615 -0.27539 -0.00015125 1.4563 0.00079986 1.1809 0.00064861 549.2307882247688 41.238 0.2043 41.238 41.1 41.304 0 18 9 2 0 0 0 0.34999 1 22206 22206 14.838 0.93222 1 3531100 62474 1470 41650 42585 72816 72816 -0.098211915924594 SYNQSFSSQPH 11 Unmodified _SYNQSFSSQPH_ 0 0 0 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant;nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1 CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant CAPRIN1|p.P577Qfs*7|1|0.07|ENSG00000135387|chr11:34096500-34096500|C/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.2778930664062 2 641.278366 1280.54218 NaN NaN NaN NaN NaN NaN NaN 22.741 1 22.741 22.241 23.241 0 0 0 0 0.93933 1 11573 11573 2.9952 1.3426 1 62475 49 41651 42586 72817 72817 -0.08687043752365753 SYNRTFMKL 9 Unmodified _SYNRTFMKL_ 0 0 0 ENSG00000111885|ENST00000368468|MAN1A1 ENSG00000111885|ENST00000368468|MAN1A1 ENSG00000111885|ENST00000368468|MAN1A1 MSMS AL20221201_MKP_PDAC_01 4 387.2042236328125 3 387.202465 1158.58556 NaN NaN NaN NaN NaN NaN NaN 44.198 1 39.346 38.846 39.846 -4.852 0 0 0 0.43047 1 26952 26952 18.373 0.50992 1 62476 2844 41652 42587 72818 72818 0.012614744912070819 SYNSQIAKI 9 Unmodified _SYNSQIAKI_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2765502929688 2 512.277106 1022.53966 0.19785 0.00010135 -0.044163 -2.2624E-05 0.15368 7.8728E-05 512.2770680830967 35.825 0.22336 35.825 35.713 35.937 0 30 10 4 0 0 0 0.0086209 1 18935 18935 89.401 33.224 1 10629000 62477 8450 41653 42588 72819 72819 0.029291525806115715 SYNSQIAKI 9 Unmodified _SYNSQIAKI_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.27880859375 2 512.277106 1022.53966 0.19916 0.00010202 0.74751 0.00038293 0.94667 0.00048496 512.277487148182 40.173 0.36366 35.644 35.477 35.84 -4.5294 63 32 3 0 0 0 0.0086209 2 24065 23926;24065 89.401 41.652 1 37041000 62478 8450 41653 42588 72820;72821 72821 0.029291525806115715 SYNVTSVLF 9 Unmodified _SYNVTSVLF_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2666625976562 2 515.266207 1028.51786 0.64566 0.00033269 0.49372 0.0002544 1.1394 0.00058708 515.2664284060126 81.744 0.54746 81.249 80.95 81.498 -0.49521 59 21 4 0 0 0 0.024882 2 44776 44678;44776 58.679 33.28 1 9446300 62479 5923 41654 42589 72822;72823 72823 0.004743478320278882 SYNVTSVLF 9 Unmodified _SYNVTSVLF_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2666625976562 2 515.266207 1028.51786 1.3022 0.00067098 -2.2488 -0.0011587 -0.9466 -0.00048775 515.265013180322 81.188 0.23263 81.248 81.165 81.397 0.059929 13 8 2 0 0 0 0.094149 1 44903 44903 34.402 18.555 1 2480000 62480 5923 41654 42589 72824 72824 0.004743478320278882 SYNVTSVLF 9 Unmodified _SYNVTSVLF_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2 nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.266207 1028.51786 0.24783 0.0001277 2.1396 0.0011025 2.3875 0.0012302 515.2673774617091 81.212 0.30246 81.212 81.067 81.37 0 -0.024321 0.0017457 NaN 58.679 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 377350 62481 5923 41654 42589 0.004743478320278882 SYNYGSEDQAE 11 Unmodified _SYNYGSEDQAE_ 0 0 0 ENSG00000100379|ENST00000403888|KCTD17;nc|ENSG00000100379|Q8N5Z5-2|KCTD17;ENST00000462640.1_1_22:37453452-37456991:+|nuORF ENSG00000100379|ENST00000403888|KCTD17 ENSG00000100379|ENST00000403888|KCTD17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7415771484375 2 631.744022 1261.47349 NaN NaN NaN NaN NaN NaN NaN 56.088 1 55.602 55.102 56.102 -0.48554 0 0 0 0.86932 1 30444 30444 8.7454 0 1 62482 1810 41655 42590 72825 72825 -0.14678752842723952 SYPAFWTSF 9 Unmodified _SYPAFWTSF_ 0 0 0 ENST00000299505.6_1_19:34791118-34791184:+|nuORF ENST00000299505.6_1_19:34791118-34791184:+|nuORF ENST00000299505.6_1_19:34791118-34791184:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2520751953125 2 553.2531 1104.49165 0.5316 0.00029411 -0.30746 -0.0001701 0.22414 0.00012401 553.2527385875102 99.904 0.13985 93.728 93.652 93.792 -6.1757 18 10 2 0 0 0 0.026094 1 66680 66680 57.471 28.39 1 50377000 62483 11545 41656 42591 72826 72826 -0.05641921339451983 SYPCHASKW 9 Unmodified _SYPCHASKW_ 0 0 0 ENST00000378533.3_1_X:38031264-38031303:-|nuORF ENST00000378533.3_1_X:38031264-38031303:-|nuORF ENST00000378533.3_1_X:38031264-38031303:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1641845703125 3 360.16401 1077.4702 -0.8428 -0.00030355 -0.2709 -9.7569E-05 -1.1137 -0.00040112 360.16395508761195 77.975 0.51961 77.492 77.215 77.735 -0.4826 100 36 3 0 0 0 0.57331 1 42823 42823 1.7423 0 1 27703000 62484 12549 41657 42592 72827 72827 -0.06543629639782012 SYPDINFNRLF 11 Unmodified _SYPDINFNRLF_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MSMS AL20221201_MKP_PDAC_01 4 693.343994140625 2 693.346052 1384.67755 NaN NaN NaN NaN NaN NaN NaN 96.403 1 90.228 89.728 90.728 -6.1757 0 0 0 0.66488 1 63885 63885 18.373 9.6277 1 62485 10598 41658 42593 72828 72828 0.0005985610923744389 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2694702148438 2 526.768583 1051.52261 0.43645 0.00022991 0.1216 6.4054E-05 0.55805 0.00029396 526.7687941417735 91.267 0.33742 91.267 91.104 91.442 0 47 20 3 0 0 0 0.30562 2 50442 50442;50537 16.942 7.5949 1 883300 62486 5519 41659 42594 72829;72830 72829 -0.0010876802521124773 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7686157226562 2 526.768583 1051.52261 0.33535 0.00017665 -0.84434 -0.00044477 -0.50899 -0.00026812 526.7683496229315 91.821 0.39819 91.34 91.127 91.525 -0.48092 52 27 2 0 0 0 0.016184 2 50205 50098;50205 67.344 20.423 1 9417900 62487 5519 41659 42594 72831;72832 72832 -0.0010876802521124773 SYPDLLPTF 9 Unmodified _SYPDLLPTF_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7673950195312 2 526.768583 1051.52261 0.72572 0.00038229 -0.49249 -0.00025943 0.23323 0.00012286 526.7681865992054 99.586 0.29668 93.41 93.261 93.558 -6.1757 41 18 3 0 0 0 0.026094 1 66305 66305 57.471 32.797 1 203230000 62488 5519 41659 42594 72833 72833 -0.0010876802521124773 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2703247070312 2 553.269281 1104.52401 0.6203 0.0003432 -0.22292 -0.00012333 0.39739 0.00021986 553.2693436466143 67.649 0.2833 67.649 67.505 67.788 0 35 13 3 0 0 0 0.10734 1 37705 37705 32.305 20.665 1 17281000 62489 795 41660 42595 72834 72834 -0.02407133936435457 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.753173828125 2 553.269281 1104.52401 0.77127 0.00042672 0.89679 0.00049617 1.6681 0.00092289 553.2694265046322 68.122 0.37298 67.64 67.475 67.848 -0.48218 59 17 6 0 0 0 0.1735 1 37233 37233 25.399 17.244 1 21697000 62490 795 41660 42595 72835 72835 -0.02407133936435457 SYPDNFLHI 9 Unmodified _SYPDNFLHI_ 0 0 0 nc|ENSG00000057663|Q9H1Y0-2|ATG5;ENSG00000057663|ENST00000369076|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 nc|ENSG00000057663|Q9H1Y0-2|ATG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.771484375 2 553.269281 1104.52401 1.0269 0.00056815 -0.2097 -0.00011602 0.8172 0.00045213 553.268995330297 74.659 1.2146 68.483 68.02 69.235 -6.1757 137 64 3 0 0 0 0.031062 4 48612 48612;48726;48845;48975 54.774 37.831 1 53766000 62491 795 41660 42595 72836;72837;72838;72839 72836 -0.02407133936435457 SYPDNHQEF 9 Unmodified _SYPDNHQEF_ 0 0 0 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7352905273438 2 568.735803 1135.45705 -0.37478 -0.00021315 -0.03001 -1.7068E-05 -0.40479 -0.00023022 568.7357968392225 27.262 0.51572 27.262 26.972 27.488 0 65 25 4 0 0 0 0.060956 2 14032 13939;14032 53.833 36.89 1 6133600 62492 7933 41661 42596 72840;72841 72841 -0.10525789218195314 SYPDNHQEF 9 Unmodified _SYPDNHQEF_ 0 0 0 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 MSMS AL20221201_MKP_PDAC_01 4 568.7366943359375 2 568.735803 1135.45705 NaN NaN NaN NaN NaN NaN NaN 30.573 1 27.076 26.576 27.576 -3.497 0 0 0 0.10415 1 17270 17270 53.833 30.684 1 62493 7933 41661 42596 72842 72842 -0.10525789218195314 SYPELVKMVW 10 Unmodified _SYPELVKMVW_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3233032226562 2 626.325742 1250.63693 1.1548 0.00072327 -0.21078 -0.00013202 0.944 0.00059125 626.3255376022014 96.556 0.35245 90.38 90.22 90.572 -6.1757 35 20 2 0 0 0 0.024351 2 63954 63954;64075 71.708 52.59 1 29202000 62494 8195 41662 42597 72843;72844 72843 0.021637984652443265 SYPFTFEAF 9 Unmodified _SYPFTFEAF_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7527465820312 2 554.752933 1107.49131 0.62652 0.00034756 -0.20363 -0.00011296 0.42289 0.0002346 554.7525455957652 92.879 0.30886 92.421 92.233 92.542 -0.4574 49 15 4 0 0 0 0.39863 2 50715 50715;50816 12.532 0.89125 1 4284100 62495 436 41663 42598 72845;72846 72845 -0.05813341059274535 SYPFTFEAF 9 Unmodified _SYPFTFEAF_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7536010742188 2 554.752933 1107.49131 1.5927 0.00088355 0.012048 6.6834E-06 1.6047 0.00089023 554.7528003216579 92.321 0.2865 92.351 92.208 92.494 0.030197 16 10 2 0 0 0 0.28047 1 51350 51350 18.135 3.2967 1 3333800 62496 436 41663 42598 72847 72847 -0.05813341059274535 SYPFTFEAF 9 Unmodified _SYPFTFEAF_ 0 0 0 nc|ENSG00000011143|Q9NXB0-2|MKS1;nc|ENSG00000011143|Q9NXB0-3|MKS1;ENSG00000011143|ENST00000393119|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 nc|ENSG00000011143|Q9NXB0-2|MKS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7532348632812 2 554.752933 1107.49131 0.36541 0.00020271 0.15991 8.8709E-05 0.52532 0.00029142 554.7529229786627 99.759 0.19008 93.584 93.474 93.664 -6.1757 34 12 4 0 0 0 0.28047 1 66532 66532 18.135 3.2967 1 133930000 62497 436 41663 42598 72848 72848 -0.05813341059274535 SYPHLRRVF 9 Unmodified _SYPHLRRVF_ 0 0 0 nc|ENSG00000197043|P08133-2|ANXA6;ENSG00000197043|ENST00000354546|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 nc|ENSG00000197043|P08133-2|ANXA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2208862304688 3 392.220847 1173.64071 -0.021416 -8.3999E-06 0.67439 0.00026451 0.65298 0.00025611 392.22097534217863 34.587 0.21215 34.614 34.456 34.668 0.027401 23 9 4 0 0 0 0.34134 1 18226 18226 15.248 3.0737 1 2087500 62498 9900 41664 42599 72849 72849 0.060836490739802684 SYPIPSGSYY 10 Unmodified _SYPIPSGSYY_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2605590820312 2 567.261122 1132.50769 NaN NaN NaN NaN NaN NaN NaN 66.542 1 66.542 66.042 67.042 0 0 0 0 0.92825 1 37112 37112 6.7232 0 1 62499 6169 41665 42600 72850 72850 -0.053262598931723915 SYPKDLRRFLL 11 Unmodified _SYPKDLRRFLL_ 0 0 0 ENSG00000177191|ENST00000691102|B3GNT8 ENSG00000177191|ENST00000691102|B3GNT8 ENSG00000177191|ENST00000691102|B3GNT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 704.4077758789062 2 704.408986 1406.80342 NaN NaN NaN NaN NaN NaN NaN 107.98 1 107.94 107.44 108.44 -0.047607 0 0 0 0.94313 1 59814 59814 0.26902 0 1 62500 8665 41666 42601 72851 72851 0.1162898768532159 SYPKHRKA 8 Unmodified _SYPKHRKA_ 0 0 0 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7828369140625 2 493.780151 985.545748 1.0791 0.00053285 0.5883 0.00029049 1.6674 0.00082334 493.78050375083524 80.453 0.5578 79.961 79.776 80.334 -0.49247 43 22 3 0 0 0 0.78849 1 44133 44133 9.3474 0 1 1545500 62501 4044 41667 42602 72852 72852 0.05239715602795059 SYPKIIEEF 9 Unmodified _SYPKIIEEF_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-4|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.29443359375 2 563.294965 1124.57538 0.32484 0.00018298 -1.0032 -0.00056508 -0.67833 -0.0003821 563.294259793058 63.238 0.4926 63.238 62.963 63.456 0 49 22 3 0 0 0 0.1685 1 35275 35275 26.268 11.43 1 2857200 62502 5618 41668 42603 72853 72853 0.018071900376071426 SYPLNSYEL 9 Unmodified _SYPLNSYEL_ 0 0 0 ENSG00000176142|ENST00000319172|TMEM39A ENSG00000176142|ENST00000319172|TMEM39A ENSG00000176142|ENST00000319172|TMEM39A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2608032226562 2 543.261122 1084.50769 0.73547 0.00039955 -0.22081 -0.00011996 0.51465 0.00027959 543.2609655444774 69.376 0.43752 63.201 62.923 63.36 -6.1757 39 23 2 0 0 0 0.05447 2 45230 45230;45351 43.858 19.838 1 34959000 62503 8567 41669 42604 72854;72855 72854 -0.03118259893199138 SYPNVFLVF 9 Unmodified _SYPNVFLVF_ 0 0 0 nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2864379882812 2 543.286943 1084.55933 0.63504 0.00034501 0.6608 0.000359 1.2958 0.00070401 543.2868213487228 100.71 0.21556 100.67 100.6 100.82 -0.04216 13 7 3 0 0 0 0.23158 1 55968 55968 20.454 6.9457 1 5504400 62504 475 41670 42605 72856 72856 0.020435285913663392 SYPPTWDPF 9 Unmodified _SYPPTWDPF_ 0 0 0 REV__ENST00000314845.7_1_11:46568681-46568783:-|nuORF REV__ENST00000314845.7_1_11:46568681-46568783:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.719482421875 2 555.250557 1108.48656 0.65294 0.00036254 -0.052378 -2.9083E-05 0.60056 0.00033346 555.250628567641 90.43 0.47287 89.936 89.735 90.208 -0.49458 52 21 3 0 0 0 0.21367 1 49349 49349 4.756 0 1 3500400 + 62505 25450 41671 42606 72857 72857 -0.063342252020675 SYPPYEQHE 9 Unmodified _SYPPYEQHE_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.D677Vfs*2|1|0.25|ENSG00000165029|chr9:104828985-104829001|CCAGAGGATGCTGTTGT/-|frameshift_variant ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2465209960938 2 575.246003 1148.47745 0.61532 0.00035396 0.28517 0.00016404 0.90049 0.000518 575.2461707355442 87.439 0.2986 86.934 86.761 87.06 -0.50423 21 12 2 0 0 0 0.55775 1 47812 47812 3.9444 1.3669 1 811680 62506 7281 41672 42607 72858 72858 -0.09084618558404145 SYPQGSIPEED 11 Unmodified _SYPQGSIPEED_ 0 0 0 ENST00000472392.1_1_3:100058773-100064548:+|nuORF ENST00000472392.1_1_3:100058773-100064548:+|nuORF ENST00000472392.1_1_3:100058773-100064548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.8475036621094 3 407.847181 1220.51971 0.043591 1.7779E-05 0.49011 0.00019989 0.5337 0.00021767 407.8474888046072 31.466 0.36626 31.466 31.234 31.6 0 44 17 3 0 0 0 0.58219 1 16354 16354 6.6235 0 1 7464400 62507 13902 41673 42608 72859 72859 -0.08172687940668766 SYPQLRRVF 9 Unmodified _SYPQLRRVF_ 0 0 0 ENST00000495713.5_1_9:75775181-75782501:+|nuORF;ENSG00000135046|ENST00000257497|ANXA1 ENST00000495713.5_1_9:75775181-75782501:+|nuORF ENST00000495713.5_1_9:75775181-75782501:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2201843261719 3 389.220735 1164.64038 -0.14056 -5.4707E-05 0.9405 0.00036606 0.79995 0.00031136 389.2211048018401 44.612 0.35405 44.59 44.303 44.657 -0.022068 29 18 2 0 0 0 0.085319 1 23872 23872 36.506 20.357 1 11383000 62508 4662 41674 42609 72860 72860 0.0646422935415103 SYPRDTCCNF 10 Unmodified _SYPRDTCCNF_ 0 0 0 ENST00000578730.1_1_4:1243843-1244044:+|nuORF;ENST00000507044.1_1_4:1243264-1244044:+|nuORF ENST00000578730.1_1_4:1243843-1244044:+|nuORF ENST00000578730.1_1_4:1243843-1244044:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.237548828125 2 603.239341 1204.46413 NaN NaN NaN NaN NaN NaN NaN 69.919 1 69.919 69.419 70.419 0 0 0 0 0.96981 1 38953 38953 3.9444 1.6417 1 62509 14533 41675 42610 72861 72861 -0.12992515933615323 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.205322265625 3 376.204974 1125.59309 -0.023495 -8.839E-06 2.2585 0.00084967 2.235 0.00084083 376.2059423985616 32.016 0.5648 31.887 31.722 32.287 -0.12915 32 22 2 0 0 0 0.36964 1 16647 16647 23.79 12.99 1 3785200 62510 12908 41676 42611 72862 72862 0.03531950083151969 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8038940429688 2 563.803823 1125.59309 0.16567 9.3405E-05 0.96351 0.00054323 1.1292 0.00063663 563.8045061792037 32.033 0.24635 31.904 31.769 32.015 -0.12915 18 9 3 0 0 0 0.49272 1 16659 16659 7.9102 1.187 1 4812200 62511 12908 41676 42611 72863 72863 0.03531950083151969 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2056274414062 3 376.204974 1125.59309 -0.25419 -9.5629E-05 0.80083 0.00030127 0.54663 0.00020565 376.20477582570436 31.825 0.52425 31.855 31.67 32.195 0.030106 117 23 7 0 0 0 0.040683 2 16633 16633;16738 39.213 17.831 1 368900000 62512 12908 41676 42611 72864;72865 72864 0.03531950083151969 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8040161132812 2 563.803823 1125.59309 0.14489 8.1687E-05 -0.6315 -0.00035604 -0.48662 -0.00027436 563.8034184439687 31.826 0.36672 31.856 31.692 32.059 0.030106 66 16 5 0 0 0 0.07087 2 16641 16641;16750 39.95 18.413 1 220420000 62513 12908 41676 42611 72866;72867 72866 0.03531950083151969 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2051086425781 3 376.204974 1125.59309 1.3253 0.00049857 -0.68696 -0.00025844 0.63831 0.00024014 376.204631586201 35.563 0.66122 31.371 31.094 31.755 -4.1928 150 41 5 0 0 0 0.062454 3 20642 20507;20642;20770 32.898 16.623 1 1008799999.9999999 62514 12908 41676 42611 72868;72869;72870 72869 0.03531950083151969 SYPRRFSTL 9 Unmodified _SYPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.8035888671875 2 563.803823 1125.59309 0.99127 0.00055888 -0.23653 -0.00013336 0.75474 0.00042552 563.803670206042 35.588 0.55303 31.395 31.111 31.664 -4.1928 116 34 5 0 0 0 0.015688 3 20525 20525;20654;20781 67.838 29.663 1 405740000 62515 12908 41676 42611 72871;72872;72873 72871 0.03531950083151969 SYPSAFSKL 9 Unmodified _SYPSAFSKL_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2613830566406 2 500.260925 998.507297 0.56442 0.00028236 0.25815 0.00012914 0.82257 0.0004115 500.2609438374112 49.694 0.39363 49.302 49.057 49.451 -0.3923 54 19 4 0 0 0 0.036857 2 26780 26666;26780 51.63 26.23 1 13348000 62516 7529 41677 42612 72874;72875 72875 0.007983651776157785 SYPSAFSKL 9 Unmodified _SYPSAFSKL_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2608642578125 2 500.260925 998.507297 0.59151 0.00029591 0.34762 0.0001739 0.93913 0.00046981 500.26121524031475 49.362 0.32425 49.318 49.093 49.417 -0.04369 27 15 2 0 0 0 0.085319 1 26623 26623 36.506 14.76 1 3182900 62517 7529 41677 42612 72876 72876 0.007983651776157785 SYPSAFSKL 9 Unmodified _SYPSAFSKL_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2619934082031 2 500.260925 998.507297 0.85608 0.00042826 0.90195 0.00045121 1.758 0.00087947 500.2612186690753 54.588 0.35616 48.723 48.542 48.899 -5.8653 57 21 3 0 0 0 0.085319 2 34603 34603;34744 36.506 14.76 1 73795000 62518 7529 41677 42612 72877;72878 72877 0.007983651776157785 SYPSAFSKL 9 Unmodified _SYPSAFSKL_ 0 0 0 nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 nc|ENSG00000166783|Q9Y4F3-3|MARF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.260925 998.507297 0.68223 0.00034129 -0.098236 -4.9144E-05 0.584 0.00029215 500.26120492850725 49.34 0.2418 49.34 49.174 49.416 0 0.020214 -0.00034563 NaN 51.63 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1539200 62519 7529 41677 42612 0.007983651776157785 SYPTDHYHL 9 Unmodified _SYPTDHYHL_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.17333984375 3 378.173451 1131.49852 -0.97461 -0.00036857 0.45894 0.00017356 -0.51567 -0.00019501 378.17370936126343 32.8 0.21256 32.8 32.695 32.908 0 16 10 2 0 0 0 0.2001 1 17178 17178 21.537 16.24 1 2861500 62520 10083 41678 42613 72879 72879 -0.06196608458844821 SYPTDHYHL 9 Unmodified _SYPTDHYHL_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.175537109375 3 378.173451 1131.49852 1.4842 0.00056127 2.4622 0.00093113 3.9463 0.0014924 378.17480119620785 36.935 0.3269 32.651 32.455 32.782 -4.2835 28 19 2 0 0 0 0.12841 1 21623 21623 21.537 13.381 1 8478300 62521 10083 41678 42613 72880 72880 -0.06196608458844821 SYPVEVFHL 9 Unmodified _SYPVEVFHL_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7830810546875 2 545.782025 1089.5495 0.351 0.00019157 0.76865 0.00041951 1.1196 0.00061108 545.7823753500833 72.583 0.24329 72.583 72.433 72.676 0 15 9 2 0 0 0 0.12841 1 40442 40442 30.225 20.041 1 880870 62522 955 41679 42614 72881 72881 0.008303405860033308 SYPVEVFHL 9 Unmodified _SYPVEVFHL_ 0 0 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7811889648438 2 545.782025 1089.5495 0.48538 0.00026491 0.1597 8.7159E-05 0.64507 0.00035207 545.7821793086349 72.958 0.57606 72.482 72.295 72.871 -0.47588 57 25 3 0 0 0 0.052168 2 39882 39882;39977 44.407 29.825 1 2878900 62523 955 41679 42614 72882;72883 72882 0.008303405860033308 SYPYSEDARQ 10 Unmodified _SYPYSEDARQ_ 0 0 0 ENSG00000068383|ENST00000368594|INPP5A ENSG00000068383|ENST00000368594|INPP5A ENSG00000068383|ENST00000368594|INPP5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.271484375 2 608.267467 1214.52038 0.26374 0.00016042 1.2358 0.0007517 1.4995 0.00091212 608.2682101159976 59.703 0.39193 59.703 59.51 59.902 0 58 17 4 0 0 0 0.62068 2 33227 33227;33344 10.074 1.9184 1 28459000 62524 978 41680 42615 72884;72885 72884 -0.0782984850095545 SYQDFFEAI 9 Unmodified _SYQDFFEAI_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2534790039062 2 560.253297 1118.49204 0.37405 0.00020957 0.309 0.00017312 0.68306 0.00038269 560.2534368157848 86.431 0.38459 86.431 86.175 86.56 0 55 17 4 0 0 0 0.06294 2 47801 47801;47893 41.84 25.992 1 5240100 62525 3358 41681 42616 72886;72887 72886 -0.06246546410238807 SYQDFFEAI 9 Unmodified _SYQDFFEAI_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2537841796875 2 560.253297 1118.49204 0.66811 0.00037431 0.37231 0.00020859 1.0404 0.0005829 560.2532853741261 86.952 0.25246 86.448 86.242 86.494 -0.50318 31 9 4 0 0 0 0.06294 1 47520 47520 41.84 21.386 1 6176700 62526 3358 41681 42616 72888 72888 -0.06246546410238807 SYQDFFEAI 9 Unmodified _SYQDFFEAI_ 0 0 0 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 ENSG00000118217|ENST00000367942|ATF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2540893554688 2 560.253297 1118.49204 1.4462 0.00081023 0.93604 0.00052442 2.3822 0.0013346 560.2534668621146 96.033 0.68513 89.857 89.481 90.166 -6.1757 102 42 3 0 0 0 0.039985 2 63695 63501;63695 49.933 36.891 1 41089000 62527 3358 41681 42616 72889;72890 72890 -0.06246546410238807 SYQEHVKQL 9 Unmodified _SYQEHVKQL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8642272949219 3 377.864617 1130.57202 -0.41052 -0.00015512 0.0055427 2.0944E-06 -0.40498 -0.00015303 377.86452314620715 21.332 0.15791 21.332 21.244 21.402 0 50 19 3 0 0 0 0.39863 2 10756 10756;10757 8.1555 1.0538 1 3766500 62528 3289;6888 41682 42617 72891;72892 72891 0.011959399836086959 SYQEHVKQL 9 Unmodified _SYQEHVKQL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.9481811523438 2 566.293288 1130.57202 -0.16121 -9.1294E-05 0.28112 0.0001592 0.11991 6.7902E-05 566.2934877511001 21.321 0.073299 21.321 21.264 21.338 0 13 8 2 0 0 0 0.46501 1 10776 10776 9.3831 5.0539 1 1172500 62529 3289;6888 41682 42617 72893 72893 0.011959399836086959 SYQEHVKQL 9 Unmodified _SYQEHVKQL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8648681640625 3 377.864617 1130.57202 0.72011 0.0002721 0.61963 0.00023414 1.3397 0.00050624 377.8648818220063 24.012 0.33219 21.185 21.041 21.374 -2.8273 39 18 3 0 0 0 0.19127 1 13018 13018 22.658 8.2527 1 9671800 62530 3289;6888 41682 42617 72894 72894 0.011959399836086959 SYQEHVKQL 9 Unmodified _SYQEHVKQL_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3;ENSG00000162645|ENST00000370466|GBP2 ENSG00000117226|ENST00000370481|GBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2942504882812 2 566.293288 1130.57202 0.3831 0.00021694 2.1676 0.0012275 2.5507 0.0014445 566.7961018629719 24.004 0.21595 21.177 21.107 21.323 -2.8273 17 11 2 0 0 0 0.0087224 1 13069 13069 107.1 63.241 1 2054200 62531 3289;6888 41682 42617 72895 72895 0.011959399836086959 SYQFILNLF 9 Unmodified _SYQFILNLF_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.806396484375 2 572.8055 1143.59645 0.73459 0.00042078 -0.62639 -0.0003588 0.1082 6.1978E-05 572.8058619206046 101.84 0.080803 95.662 95.6 95.68 -6.1757 6 5 2 0 0 0 0.011739 1 68370 68370 92.653 42.72 1 12314000 62532 3157 41683 42618 72896 72896 0.03039200137118314 SYQGKGFVM 9 Unmodified _SYQGKGFVM_ 0 0 0 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 ENSG00000130202|ENST00000252483|NECTIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7462768554688 2 508.747127 1015.4797 0.39496 0.00020093 0.22938 0.0001167 0.62434 0.00031763 508.7471981487097 44.078 0.34898 39.313 39.109 39.458 -4.7648 31 22 2 0 0 0 0.036857 1 26825 26825 51.63 28.481 1 15575000 62533 4189 41684 42619 72897 72897 -0.027418613542636194 SYQGVVQFA 9 Unmodified _SYQGVVQFA_ 0 0 0 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 ENSG00000162738|ENST00000368061|VANGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.758056640625 2 499.750724 997.486896 0.16442 8.217E-05 2.7822 0.0013904 2.9466 0.0014726 499.7506253547378 43.613 0.42102 43.613 43.399 43.82 0 63 20 5 0 0 0 0.34999 1 23729 23729 14.838 0 1 138930000 62534 6905 41685 42620 72898 72898 -0.011948054821914411 SYQHTSVTL 9 Unmodified _SYQHTSVTL_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT;ENST00000443317.1_1_20:32801869-32802238:-|nuORF;ENST00000449426.1_1_7:56356827-56358135:+|nuORF ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.257568359375 2 518.258914 1034.50327 -0.99104 -0.00051361 0.65898 0.00034152 -0.33205 -0.00017209 518.2588240092292 32.51 0.15758 32.51 32.481 32.639 0 11 8 2 0 0 0 0.094149 1 17004 17004 34.402 11.253 1 2030600 62535 9273 41686 42621 72899 72899 -0.01259724316082611 SYQKLLFKF 9 Unmodified _SYQKLLFKF_ 0 0 0 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3372802734375 2 587.336967 1172.65938 0.47903 0.00028135 -0.03482 -2.0451E-05 0.44421 0.0002609 587.3368012795446 61.008 0.25924 60.965 60.805 61.064 -0.04351 28 12 3 0 0 0 0.012228 1 33263 33263 74.2 46.571 1 7376400 62536 539 41687 42622 72900 72900 0.07995765925170417 SYQKLLFKF 9 Unmodified _SYQKLLFKF_ 0 0 0 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3369750976562 2 587.336967 1172.65938 1.0901 0.00064027 -0.22153 -0.00013012 0.86858 0.00051015 587.3369384591874 89.162 0.6392 82.986 82.599 83.239 -6.1757 72 35 3 0 0 0 0.0093064 2 58694 58694;58820 83.429 55.8 1 22890000 62537 539 41687 42622 72901;72902 72901 0.07995765925170417 SYQKLLFKF 9 Unmodified _SYQKLLFKF_ 0 0 0 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENSG00000023287|ENST00000025008|RB1CC1 RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant RB1CC1|p.N1171Kfs*8|1|0.24|ENSG00000023287|chr8:52656316-52656317|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2288208007812 3 391.893737 1172.65938 1.4073 0.00055151 -0.7089 -0.00027781 0.69839 0.00027369 391.89354153596764 89.045 0.49095 82.869 82.636 83.127 -6.1757 63 27 3 0 0 0 0.07087 1 58743 58743 30.703 23.226 1 22174000 62538 539 41687 42622 72903 72903 0.07995765925170417 SYQKNPLKL 9 Unmodified _SYQKNPLKL_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7 ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2135620117188 3 364.213358 1089.61824 -0.16502 -6.0104E-05 0.52083 0.00018969 0.3558 0.00012959 364.2135010054681 32.415 0.31676 32.285 32.12 32.437 -0.12915 23 13 3 0 0 0 0.15471 1 16881 16881 20.581 9.0862 1 2808500 62539 1579 41688 42623 72904 72904 0.07702004885709357 SYQKNPLKL 9 Unmodified _SYQKNPLKL_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7 ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.213623046875 3 364.213358 1089.61824 1.7271 0.00062904 -0.50589 -0.00018425 1.2212 0.00044479 364.2131238869529 35.74 0.47132 31.547 31.269 31.741 -4.1928 73 29 3 0 0 0 0.19127 1 20725 20725 17.443 9.2871 1 32550000 62540 1579 41688 42623 72905 72905 0.07702004885709357 SYQKNPLKL 9 Unmodified _SYQKNPLKL_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7 ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8169555664062 2 545.816399 1089.61824 0.9911 0.00054096 -0.28042 -0.00015306 0.71067 0.0003879 545.8163635681025 35.736 0.29655 31.544 31.367 31.664 -4.1928 31 18 2 0 0 0 0.0089732 1 20732 20732 86.332 65.917 1 9758000 62541 1579 41688 42623 72906 72906 0.07702004885709357 SYQKNPLKL 9 Unmodified _SYQKNPLKL_ 0 0 0 ENSG00000091127|ENST00000469408|PUS7;nc|ENSG00000091127|Q96PZ0-2|PUS7 ENSG00000091127|ENST00000469408|PUS7 ENSG00000091127|ENST00000469408|PUS7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 364.213358 1089.61824 -0.2293 -8.3515E-05 0.59034 0.00021501 0.36104 0.00013149 364.2135006572911 32.226 0.26313 32.255 32.151 32.414 0.029743 -0.015 2.9995E-05 NaN 20.581 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2661700 62542 1579 41688 42623 0.07702004885709357 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.8117065429688 2 563.810782 1125.60701 0.4329 0.00024407 0.99551 0.00056128 1.4284 0.00080536 563.8112295963789 68.551 0.38613 68.551 68.33 68.717 0 55 17 4 0 0 0 0.033587 2 38236 38134;38236 53.404 19.002 1 8484500 62543 16367 41689 42624 72907;72908 72908 0.04923182791549152 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.312744140625 2 563.810782 1125.60701 0.39121 0.00022057 -0.80305 -0.00045277 -0.41185 -0.0002322 563.8102394114849 68.933 0.90446 68.452 68.18 69.085 -0.48071 124 39 6 0 0 0 0.033587 3 37580 37580;37685;37785 53.404 22.767 1 436780000 62544 16367 41689 42624 72909;72910;72911 72909 0.04923182791549152 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8110961914062 2 563.810782 1125.60701 0.89778 0.00050618 0.14236 8.0266E-05 1.0401 0.00058645 563.8107980212942 68.42 0.40067 68.445 68.241 68.642 0.025154 106 19 8 0 0 0 0.018061 2 37613 37516;37613 65.474 23.634 1 166740000 62545 16367 41689 42624 72912;72913 72913 0.04923182791549152 SYQKVIELF 9 Unmodified _SYQKVIELF_ 0 0 0 nc|ENSG00000168078|Q96KB5-2|PBK;ENSG00000168078|ENST00000301905|PBK nc|ENSG00000168078|Q96KB5-2|PBK nc|ENSG00000168078|Q96KB5-2|PBK MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.81103515625 2 563.810782 1125.60701 0.50952 0.00028727 0.54017 0.00030455 1.0497 0.00059183 563.8109055523428 85.44 3.0577 79.264 76.883 79.94 -6.1757 548 174 4 0 0 0 0.012228 16 55586 54696;54817;54947;55074;55200;55329;55463;55586;55721;55851;55986;56114;56240;56373;56510;56643 74.2 38.073 1 394960000 62546 16367 41689 42624 72914;72915;72916;72917;72918;72919;72920;72921;72922;72923;72924;72925;72926;72927;72928;72929 72921 0.04923182791549152 SYQKVMALW 9 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ SYQKVM(1)ALW SYQKVM(58)ALW 0 0 1 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2894897460938 2 571.289159 1140.56377 0.48961 0.00027971 1.5147 0.00086532 2.0043 0.001145 571.2905712323061 52.206 0.75491 52.147 51.731 52.486 -0.058918 96 36 5 0 0 0 0.025842 1 28296 28296 57.722 13.864 1 14325000 62547 4022 41690 42625 72930 72930 719 -0.0008933025735586853 SYQKVMALW 9 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ SYQKVM(1)ALW SYQKVM(50)ALW 0 0 1 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2882690429688 2 571.289159 1140.56377 1.0984 0.0006275 0.43611 0.00024915 1.5345 0.00087664 571.2893593533518 57.416 0.36799 51.389 51.201 51.569 -6.0275 32 19 2 0 0 0 0.040683 1 36713 36713 49.554 13.427 1 44672000 62548 4022 41690 42625 72931 72931 719 -0.0008933025735586853 SYQKVMALW 9 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ SYQKVM(1)ALW SYQKVM(62)ALW 0 0 1 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20221201_MKP_PDAC_01 4 571.2894897460938 2 571.289159 1140.56377 NaN NaN NaN NaN NaN NaN NaN 57.598 1 51.57 51.07 52.07 -6.0275 0 0 0 0.041018 1 36845 36845 61.602 17.744 1 62549 4022 41690 42625 72932 72932 719 -0.0008933025735586853 SYQKVMALW 9 Oxidation (M) _SYQKVM(Oxidation (M))ALW_ 0 0 1 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.289159 1140.56377 0.38113 0.00021774 4.4352 0.0025338 4.8163 0.0027515 571.2913273421111 51.705 0.13113 51.705 51.622 51.753 0 -0.27539 0.0024359 NaN 57.722 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 757540 62550 4022 41690 42625 719 -0.0008933025735586853 SYQKVMALW 9 Unmodified _SYQKVMALW_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.292236328125 2 563.291702 1124.56885 1.1645 0.00065595 -2.2496 -0.0012672 -1.0851 -0.00061125 563.291042596538 64.513 0.41099 64.503 64.318 64.729 -0.010536 51 20 3 0 0 0 0.062454 1 35313 35313 41.956 27.374 1 4007100 62551 4022 41690 42626 72933 72933 0.011549736052529624 SYQPNENKF 9 Unmodified _SYQPNENKF_ 0 0 0 ENSG00000168143|ENST00000306858|FAM83B ENSG00000168143|ENST00000306858|FAM83B ENSG00000168143|ENST00000306858|FAM83B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7623901367188 2 563.76182 1125.50909 -0.24805 -0.00013984 2.3292 0.0013131 2.0811 0.0011733 563.7635710581156 25.934 0.30938 25.934 25.717 26.026 0 23 14 2 0 0 0 0.19127 1 13329 13329 24.021 12.526 1 2373200 62552 7723 41691 42627 72934 72934 -0.04864625804430034 SYQPSSPGRF 10 Unmodified _SYQPSSPGRF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2703857421875 2 563.269813 1124.52507 0.57514 0.00032396 0.083327 4.6936E-05 0.65846 0.00037089 563.2699399476568 30.946 0.22632 30.843 30.665 30.891 -0.10269 14 8 2 0 0 0 0.1379 1 16043 16043 47.594 21.326 1 1147300 62553 4959 41692 42628 72935 72935 -0.03220919567525016 SYQQLRLVF 9 Unmodified _SYQQLRLVF_ 0 0 0 ENSG00000109511|ENST00000359299|ANXA10;ENST00000507278.5_1_4:169086345-169108582:+|nuORF ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3228149414062 2 577.321848 1152.62914 0.74347 0.00042922 -0.266 -0.00015356 0.47747 0.00027566 577.3216758263055 70.192 0.53665 70.228 70.055 70.592 0.035507 48 25 3 0 0 0 0.010301 2 38588 38588;38700 79.596 33.897 1 32252000 62554 2654 41693 42629 72936;72937 72936 0.05893407259986816 SYQQLRLVF 9 Unmodified _SYQQLRLVF_ 0 0 0 ENSG00000109511|ENST00000359299|ANXA10;ENST00000507278.5_1_4:169086345-169108582:+|nuORF ENSG00000109511|ENST00000359299|ANXA10 ENSG00000109511|ENST00000359299|ANXA10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3204956054688 2 577.321848 1152.62914 1.1284 0.00065144 1.4203 0.00082 2.5487 0.0014714 577.3224992036338 81.569 0.40851 75.393 75.21 75.618 -6.1757 42 22 2 0 0 0 0.013609 1 53522 53522 70.332 32.156 1 15616000 62555 2654 41693 42629 72938 72938 0.05893407259986816 SYQRAFNEF 9 Unmodified _SYQRAFNEF_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.269775390625 2 581.269813 1160.52507 0.021057 1.224E-05 -0.22376 -0.00013007 -0.2027 -0.00011783 581.2693930782597 43.684 0.23777 43.684 43.526 43.764 0 25 11 3 0 0 0 0.0081887 1 23698 23698 93.166 61.898 1 31632000 62556 9344 41694 42630 72939 72939 -0.04876919567527693 SYQRAFNEF 9 Unmodified _SYQRAFNEF_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.271240234375 2 581.269813 1160.52507 NaN NaN NaN NaN NaN NaN NaN 43.854 1 43.538 43.038 44.038 -0.31585 0 0 0 0.014214 1 23347 23347 86.332 55.695 1 62557 9344 41694 42630 72940 72940 -0.04876919567527693 SYQRAFNEF 9 Unmodified _SYQRAFNEF_ 0 0 0 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 ENSG00000185215|ENST00000560869|TNFAIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2708740234375 2 581.269813 1160.52507 0.70884 0.00041203 0.43539 0.00025308 1.1442 0.0006651 581.2700379389087 48.821 0.44678 43.425 43.186 43.633 -5.3961 58 26 3 0 0 0 0.0089732 2 30520 30392;30520 86.332 62.311 1 143580000 62558 9344 41694 42630 72941;72942 72942 -0.04876919567527693 SYQSQINHI 9 Unmodified _SYQSQINHI_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2697143554688 2 545.269813 1088.52507 -0.37604 -0.00020504 -0.17234 -9.3974E-05 -0.54838 -0.00029902 545.2693444869466 31.908 0.36216 31.908 31.681 32.043 0 39 17 4 0 0 0 0.015688 1 16620 16620 85.272 47.298 1 11930000 62559 2506 41695 42631 72943 72943 -0.015649195675223382 SYQSQINHI 9 Unmodified _SYQSQINHI_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.272216796875 2 545.269813 1088.52507 1.1229 0.00061226 -0.32344 -0.00017636 0.79943 0.0004359 545.2695510519089 36.049 0.43614 31.856 31.63 32.067 -4.1928 48 26 2 0 0 0 0.015688 2 20900 20900;21023 85.272 47.298 1 39801000 62560 2506 41695 42631 72944;72945 72944 -0.015649195675223382 SYQSVFLFL 9 Unmodified _SYQSVFLFL_ 0 0 0 ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B ENST00000366591.4_1_1:236305922-236343463:+|nuORF ENST00000366591.4_1_1:236305922-236343463:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2938842773438 2 552.292225 1102.5699 0.75488 0.00041692 1.107 0.0006114 1.8619 0.0010283 552.2930082343769 101.62 0.17316 95.445 95.33 95.503 -6.1757 13 8 2 0 0 0 0.076472 1 68200 68200 49.933 23.049 1 35437000 62561 1222 41696 42632 72946 72946 0.02271511245817237 SYQTCEKNL 9 Unmodified _SYQTCEKNL_ 0 0 0 HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2522583007812 2 543.250231 1084.48591 0.61614 0.00033472 2.5068 0.0013618 3.1229 0.0016965 543.2522276592202 73.252 0.5833 73.252 72.985 73.568 0 44 29 2 0 0 0 0.30562 2 40773 40773;40886 16.942 5.302 1 2728700 62562 15907 41697 42633 72947;72948 72947 -0.05295387913406557 SYQTCEKNL 9 Unmodified _SYQTCEKNL_ 0 0 0 HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense HAL1_dup9460|chr6:132686519-132687118:+|2.7707639461382807|0.3058362515234525|3.18|177.0|16|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.253173828125 2 543.250231 1084.48591 0.48315 0.00026247 0.54102 0.00029391 1.0242 0.00055638 543.2521020960372 73.807 0.55347 73.331 72.974 73.527 -0.47588 33 25 2 0 0 0 0.41742 2 40280 40280;40390 11.64 4.9171 1 1396300 62563 15907 41697 42633 72949;72950 72949 -0.05295387913406557 SYRARPRAL 9 Unmodified _SYRARPRAL_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3167724609375 2 545.317432 1088.62031 0.29242 0.00015946 -0.89245 -0.00048667 -0.60004 -0.00032721 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.58466 1 42765 42765 2.3027 0 1 5672300 62564 16114 41698 42634 72951 72951 0.07954478414171717 SYRCPCRFF 9 Unmodified _SYRCPCRFF_ 0 0 0 ENST00000488591.1_1_10:44876209-44880453:-|nuORF;ENSG00000107562|ENST00000343575|CXCL12;nc|ENSG00000107562|P48061-5|CXCL12;nc|ENSG00000107562|P48061|CXCL12;nc|ENSG00000107562|P48061-6|CXCL12;nc|ENSG00000107562|P48061-7|CXCL12;ENST00000496375.1_1_10:44874083-44881535:-|nuORF;nc|ENSG00000107562|P48061-3|CXCL12;nc|ENSG00000107562|P48061-4|CXCL12 ENST00000488591.1_1_10:44876209-44880453:-|nuORF ENST00000488591.1_1_10:44876209-44880453:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2858276367188 2 589.765329 1177.5161 NaN NaN NaN NaN NaN NaN NaN 71.586 1 71.586 71.086 72.086 0 0 0 0 0.84369 1 39872 39872 2.3027 0 1 62565 2501 41699 42635 72952 72952 -0.0655530772921793 SYRDQQLL 8 Unmodified _SYRDQQLL_ 0 0 0 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.4314880371094 2 511.766906 1021.51926 NaN NaN NaN NaN NaN NaN NaN 95.663 1 95.295 94.795 95.795 -0.36814 0 0 0 0.97444 1 52250 52250 0.79363 0 1 62566 3726 41700 42636 72953 72953 0.009359819208043518 SYRDSYESY 9 Unmodified _SYRDSYESY_ 0 0 0 nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX nc|ENSG00000147274|P38159-2|RBMX nc|ENSG00000147274|P38159-2|RBMX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2406616210938 2 585.240918 1168.46728 -0.45718 -0.00026756 3.9844 0.0023318 3.5272 0.0020642 585.7461043342686 26.004 0.26799 26.004 25.799 26.067 0 18 12 2 0 0 0 0.32235 2 13376 13318;13376 16.149 6.0752 1 867960 62567 5838 41701 42637 72954;72955 72955 -0.11021226283605756 SYREDPIVY 9 Unmodified _SYREDPIVY_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2814331054688 2 571.279846 1140.54514 0.068803 3.9306E-05 -1.0384 -0.00059319 -0.96955 -0.00055388 571.279198225037 40.493 0.28773 40.493 40.333 40.62 0 41 14 4 0 0 0 0.05483 1 21723 21723 43.772 26.659 1 29478000 62568 2385 41702 42638 72956 72956 -0.019511686275791362 SYREHRVAL 9 Unmodified _SYREHRVAL_ 0 0 0 nc|ENSG00000186038|A5X5Y0-3|HTR3E;nc|ENSG00000186038|A5X5Y0-4|HTR3E;nc|ENSG00000186038|A5X5Y0-6|HTR3E nc|ENSG00000186038|A5X5Y0-3|HTR3E nc|ENSG00000186038|A5X5Y0-3|HTR3E MSMS AL20221201_MKP_PDAC_01 4 377.5413208007812 3 377.540357 1129.59924 NaN NaN NaN NaN NaN NaN NaN 29.812 1 26.511 26.011 27.011 -3.3016 0 0 0 0.29524 1 16789 16789 18.373 6.1455 1 62569 16460 41703 42639 72957 72957 0.03962468314648504 SYRELFEFF 9 Unmodified _SYRELFEFF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.2984619140625 2 619.298039 1236.58152 0.34795 0.00021548 -0.10046 -6.2215E-05 0.24749 0.00015327 619.2978573001673 91.145 0.33965 91.145 90.971 91.31 0 49 19 4 0 0 0 0.43305 1 50457 50457 15.248 8.5253 1 2696700 62570 2778 41704 42640 72958 72958 -0.027302917308816177 SYRELFEFF 9 Unmodified _SYRELFEFF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2974853515625 2 619.298039 1236.58152 0.47947 0.00029693 -0.7839 -0.00048547 -0.30443 -0.00018854 619.2974835790415 91.657 1.4073 91.176 90.925 92.332 -0.48093 255 76 5 0 0 0 0.052231 7 50088 49990;50088;50194;50371;50467;50561;50676 55.503 44.703 1 90854000 62571 2778 41704 42640 72959;72960;72961;72962;72963;72964;72965 72960 -0.027302917308816177 SYRELFEFF 9 Unmodified _SYRELFEFF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.2979125976562 2 619.298039 1236.58152 1.0522 0.0006516 -0.79711 -0.00049365 0.25506 0.00015796 619.2974829701916 90.989 1.2049 91.025 90.767 91.972 0.036507 122 44 5 0 0 0 0.024507 4 50627 50521;50627;50727;50909 72.968 60.074 1 731490000 62572 2778 41704 42640 72966;72967;72968;72969 72967 -0.027302917308816177 SYRELFEFF 9 Unmodified _SYRELFEFF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.2986450195312 2 619.298039 1236.58152 NaN NaN NaN NaN NaN NaN NaN 91.916 1 91.946 91.446 92.446 0.030197 0 0 0 0.40636 1 51120 51120 26.268 11.43 1 62573 2778 41704 42640 72970 72970 -0.027302917308816177 SYRELFEFF 9 Unmodified _SYRELFEFF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.2979736328125 2 619.298039 1236.58152 0.41414 0.00025648 0.17085 0.00010581 0.58499 0.00036228 619.2981050588655 99.909 0.46478 93.733 93.623 94.088 -6.1757 109 31 5 0 0 0 0.0073703 2 66646 66646;66820 110.67 78.369 1 2897000000 62574 2778 41704 42640 72971;72972 72971 -0.027302917308816177 SYRERPLWFEF 11 Unmodified _SYRERPLWFEF_ 0 0 0 REV__ENSG00000185761|ENST00000330475|ADAMTSL5 REV__ENSG00000185761|ENST00000330475|ADAMTSL5 MSMS AL20221201_MKP_PDAC_01 4 765.378662109375 2 765.380426 1528.7463 NaN NaN NaN NaN NaN NaN NaN 78.012 1 71.836 71.336 72.336 -6.1757 0 0 0 0.86932 1 51047 51047 8.7454 1.1365 1 + 62575 23524 41705 42641 72973 72973 0.003075204089327599 SYRIIYNLF 9 Unmodified _SYRIIYNLF_ 0 0 0 ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP ENSG00000163659|ENST00000295924|TIPARP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.32421875 2 594.824224 1187.63389 0.095615 5.6874E-05 1.1114 0.00066111 1.2071 0.00071798 594.8248375545336 79.454 0.51331 79.509 79.336 79.849 0.05497 47 19 3 0 0 0 0.13231 1 43847 43847 29.841 2.9569 1 84441000 62576 7043 41706 42642 72974 72974 0.04758291402731629 SYRPDSDHSS 10 Unmodified _SYRPDSDHSS_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7423095703125 2 575.741616 1149.46868 NaN NaN NaN NaN NaN NaN NaN 68.109 1 68.109 67.609 68.609 0 0 0 0 0.97592 1 37975 37975 3.2813 0 1 + 62577 19051 41707 42643 72975 72975 -0.10007592194870085 SYRQFHHY 8 Unmodified _SYRQFHHY_ 0 0 0 REV__nc|ENSG00000136715|Q9H0E3-2|SAP130 REV__nc|ENSG00000136715|Q9H0E3-2|SAP130 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2667846679688 2 569.264865 1136.51518 NaN NaN NaN NaN NaN NaN NaN 27.46 1 27.413 26.913 27.913 -0.046408 0 0 0 0.97444 1 14152 14152 2.5775 0.27475 1 + 62578 20176 41708 42644 72976 72976 -0.047620627822425377 SYRQSSATSSF 11 Unmodified _SYRQSSATSSF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7805786132812 2 610.780741 1219.54693 -0.25527 -0.00015592 0.20733 0.00012663 -0.047944 -2.9283E-05 610.7808781426627 23.613 0.34369 23.613 23.427 23.771 0 67 17 5 0 0 0 1.764E-06 2 12082 11983;12082 111.31 80.041 1 41117000 + 62579 167 41709 42645 72977;72978 72978 -0.05406159609628958 SYRQSSATSSF 11 Unmodified _SYRQSSATSSF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.77978515625 2 610.780741 1219.54693 0.089854 5.4881E-05 -0.22915 -0.00013996 -0.1393 -8.5081E-05 610.7804411283598 23.726 0.21962 23.738 23.614 23.833 0.012396 21 10 3 0 0 0 0.0057099 1 12086 12086 79.427 79.427 1 9340000 + 62580 167 41709 42645 72979 72979 -0.05406159609628958 SYRQSSATSSF 11 Unmodified _SYRQSSATSSF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.7794189453125 2 610.780741 1219.54693 NaN NaN NaN NaN NaN NaN NaN 23.551 1 23.573 23.073 24.073 0.021185 0 0 0 0.11837 1 12133 12133 57.108 20.981 1 + 62581 167 41709 42645 72980 72980 -0.05406159609628958 SYRQSSATSSF 11 Unmodified _SYRQSSATSSF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7811279296875 2 610.780741 1219.54693 0.39895 0.00024367 0.021563 1.317E-05 0.42051 0.00025684 610.7808093955834 26.538 0.30822 23.587 23.405 23.713 -2.9511 29 15 2 0 0 0 0.0011221 2 14689 14572;14689 92.201 61.564 1 19833000 + 62582 167 41709 42645 72981;72982 72982 -0.05406159609628958 SYRRIFTCPP 10 Unmodified _SYRRIFTCPP_ 0 0 0 REV__MER49_dup1305|chr21:41210187-41211078:+|1.2015258161863536|0.4412608656295442|1.45|179.0|20|2|sense REV__MER49_dup1305|chr21:41210187-41211078:+|1.2015258161863536|0.4412608656295442|1.45|179.0|20|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.8651428222656 3 413.881614 1238.62301 0.16601 6.8709E-05 -1.3946 -0.00057718 -1.2285 -0.00050847 413.8815566809574 31.561 0.1233 31.458 31.406 31.529 -0.10269 6 4 2 0 0 0 0.23946 1 16450 16450 3.5871 0 1 1145100 + 62583 29462 41710 42646 72983 72983 0.013245657568404567 SYRSALSKMR 10 Unmodified _SYRSALSKMR_ 0 0 0 ENST00000566045.5_1_16:53529153-53534189:-|nuORF ENST00000566045.5_1_16:53529153-53534189:-|nuORF ENST00000566045.5_1_16:53529153-53534189:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2171630859375 3 400.216885 1197.62883 NaN NaN NaN NaN NaN NaN NaN 33.096 1 33.096 32.596 33.596 0 0 0 0 0.9731 1 17330 17330 3.5871 1.8448 1 62584 15414 41711 42647 72984 72984 0.03791664268487693 SYRSDSDIF 9 Unmodified _SYRSDSDIF_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.243896484375 2 545.246003 1088.47745 0.11458 6.2476E-05 -2.9301 -0.0015976 -2.8155 -0.0015351 545.244163948352 59.589 0.18464 59.099 58.987 59.171 -0.49079 13 8 2 0 0 0 0.5029 1 32429 32429 7.2892 0.93513 1 1649900 62585 8065 41712 42648 72985 72985 -0.06324618558392103 SYRSVQEFL 9 Unmodified _SYRSVQEFL_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2662963867188 2 564.787838 1127.56112 0.52967 0.00029915 1.0649 0.00060147 1.5946 0.00090062 564.7883547732783 53.139 0.19154 53.139 53.003 53.195 0 17 8 3 0 0 0 0.19496 1 29401 29401 13.906 1.3745 1 1530300 62586 410 41713 42649 72986 72986 0.002445376093419327 SYRSVQEFL 9 Unmodified _SYRSVQEFL_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.787841796875 2 564.787838 1127.56112 0.63171 0.00035678 -0.74313 -0.00041971 -0.11142 -6.2929E-05 564.7875418693113 53.573 0.44059 53.121 52.859 53.3 -0.45173 55 21 3 0 0 0 0.14594 1 29001 29001 28.495 2.2264 1 3397400 62587 410 41713 42649 72987 72987 0.002445376093419327 SYRTAIKHRRK 11 Unmodified _SYRTAIKHRRK_ 0 0 0 ENST00000489713.5_1_13:101277731-101290025:-|nuORF;ENST00000462211.5_1_13:101277731-101294530:-|nuORF;nc|ENSG00000125247|Q5T4D3-2|TMTC4;nc|ENSG00000125247|Q5T4D3-4|TMTC4;nc|ENSG00000125247|Q5T4D3|TMTC4;ENSG00000125247|ENST00000342624|TMTC4 ENST00000489713.5_1_13:101277731-101290025:-|nuORF ENST00000489713.5_1_13:101277731-101290025:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.6159973144531 3 472.616259 1414.82695 NaN NaN NaN NaN NaN NaN NaN 103.68 1 103.63 103.13 104.13 -0.047928 0 0 0 0.94301 1 57576 57576 0.094841 0.011491 1 62588 3834 41714 42650 72988 72988 0.13612846242472187 SYRYAPMVAF 10 Unmodified _SYRYAPMVAF_ 0 0 0 ENSG00000138722|ENST00000264790|MMRN1;nc|ENSG00000138722|Q13201-2|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7960205078125 2 602.794609 1203.57467 -0.57835 -0.00034862 0.30895 0.00018623 -0.26939 -0.00016239 602.7949205148041 40.842 2.0167 40.842 40.491 42.507 0 440 122 7 0 0 0 0.54684 1 22270 22270 13.906 0.39817 1 14353000000 62589 5092 41715 42651 72989 72989 -0.01897927883101147 SYSALMRELEL 11 Unmodified _SYSALMRELEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.3351440429688 2 656.334295 1310.65404 -0.50723 -0.00033291 0.87731 0.00057581 0.37008 0.00024289 656.3351232271223 78.208 0.21248 77.722 77.608 77.82 -0.48596 14 8 3 0 0 0 0.59643 1 42858 42858 11.518 6.6209 1 704470 62590 16412 41716 42652 72990 72990 0.011136742803728339 SYSALMRELEL 11 Unmodified _SYSALMRELEL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3350830078125 2 656.334295 1310.65404 1.163 0.00076334 -0.27223 -0.00017867 0.89081 0.00058467 656.3345947351214 95.838 0.23261 89.663 89.569 89.801 -6.1757 35 13 3 0 0 0 7.5243E-09 1 63500 63500 112.04 62.487 1 33031000 62591 16412 41716 42652 72991 72991 0.011136742803728339 SYSALPMYL 9 Unmodified _SYSALPMYL_ 0 0 0 ENSG00000197241|ENST00000400906|SLC2A7 ENSG00000197241|ENST00000400906|SLC2A7 ENSG00000197241|ENST00000400906|SLC2A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.761474609375 2 522.757161 1043.49977 1.0389 0.00054307 -3.7044 -0.0019365 -2.6656 -0.0013935 522.7552440793161 60.228 0.64338 54.114 53.834 54.478 -6.1147 76 33 3 0 0 0 0.14602 1 38878 38878 28.487 10.352 1 139990000 62592 9931 41717 42653 72992 72992 -0.02024110414322422 SYSCQEGETK 10 Unmodified _SYSCQEGETK_ 0 0 0 ENST00000511232.5_1_5:140047750-140048038:+|nuORF;ENSG00000120314|ENST00000358337|WDR55 ENST00000511232.5_1_5:140047750-140048038:+|nuORF ENST00000511232.5_1_5:140047750-140048038:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8268737792969 3 377.825611 1130.455 NaN NaN NaN NaN NaN NaN NaN 64.89 1 64.89 64.39 65.39 0 0 0 0 0.99388 1 36193 36193 0.56317 0 1 62593 3507 41718 42654 72993 72993 -0.10500586018315516 SYSDPPLKF 9 Unmodified _SYSDPPLKF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.268310546875 2 527.266207 1052.51786 0.35528 0.00018732 0.38994 0.0002056 0.74522 0.00039293 527.2665031050708 52.499 0.39586 52.499 52.332 52.728 0 55 17 4 0 0 0 0.032796 2 29019 29019;29126 53.833 35.698 1 63984000 62594 7918 41719 42655 72994;72995 72994 -0.006296521679587386 SYSDPPLKF 9 Unmodified _SYSDPPLKF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2657470703125 2 527.266207 1052.51786 0.2483 0.00013092 0.21943 0.0001157 0.46773 0.00024662 527.2665128920897 53.016 0.402 52.564 52.381 52.783 -0.45173 61 20 4 0 0 0 0.08691 2 28613 28613;28725 36.127 25.303 1 68605000 62595 7918 41719 42655 72996;72997 72996 -0.006296521679587386 SYSDPPLKF 9 Unmodified _SYSDPPLKF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.267578125 2 527.266207 1052.51786 0.64291 0.00033899 0.26839 0.00014151 0.91131 0.0004805 527.2664084035708 52.7 0.20184 52.636 52.522 52.724 -0.063419 21 9 3 0 0 0 0.19127 1 28565 28565 24.021 13.837 1 3312800 62596 7918 41719 42655 72998 72998 -0.006296521679587386 SYSDPPLKF 9 Unmodified _SYSDPPLKF_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2669067382812 2 527.266207 1052.51786 1.4436 0.00076118 0.46118 0.00024316 1.9048 0.0010043 527.2664659830591 58.587 0.61409 52.512 52.184 52.798 -6.0745 84 33 3 0 0 0 0.047788 3 37581 37445;37581;37718 45.7 34.059 1 270700000 62597 7918 41719 42655 72999;73000;73001 73000 -0.006296521679587386 SYSEIKDFL 9 Unmodified _SYSEIKDFL_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-4|DCLRE1C;nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENST00000492201.5_1_10:14962436-14970058:-|nuORF ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2758178710938 2 551.276772 1100.53899 0.39483 0.00021766 1.8858 0.0010396 2.2807 0.0012573 551.2779033421818 63.054 0.55916 63.054 62.846 63.405 0 65 23 4 0 0 0 0.085319 2 35101 35101;35207 36.506 17.249 1 8803400 62598 6187 41720 42656 73002;73003 73002 -0.0072568685909573105 SYSELIYYF 9 Unmodified _SYSELIYYF_ 0 0 0 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 ENSG00000146281|ENST00000275072|PM20D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.77978515625 2 592.779148 1183.54374 0.45123 0.00026748 1.833 0.0010865 2.2842 0.001354 592.780644536269 93.423 0.34038 92.965 92.771 93.111 -0.4574 29 14 3 0 0 0 0.12841 1 51045 51045 30.225 21.632 1 773670 62599 5770 41721 42657 73004 73004 -0.04068802716346909 SYSEVANHI 9 Unmodified _SYSEVANHI_ 0 0 0 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2433166503906 2 510.243264 1018.47197 -0.54754 -0.00027938 -0.68494 -0.00034948 -1.2325 -0.00062886 510.2438867035069 32.074 0.20289 32.074 31.961 32.164 0 27 9 4 0 0 0 0.013323 1 16727 16727 71.134 37.031 1 1984000 62600 6256 41722 42658 73005 73005 -0.03652297350186018 SYSEVANHI 9 Unmodified _SYSEVANHI_ 0 0 0 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 ENSG00000153294|ENST00000283303|ADGRF4 MSMS AL20221201_MKP_PDAC_01 4 510.2434387207031 2 510.243264 1018.47197 NaN NaN NaN NaN NaN NaN NaN 36.599 1 32.316 31.816 32.816 -4.2835 0 0 0 0.0064238 1 21387 21387 100.37 55.964 1 62601 6256 41722 42658 73006 73006 -0.03652297350186018 SYSFFTLLF 9 Unmodified _SYSFFTLLF_ 0 0 0 REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF REV__ENST00000467233.1_1_7:140080048-140082260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.5266723632812 3 375.526943 1123.559 -0.33964 -0.00012754 -0.94485 -0.00035482 -1.2845 -0.00048236 375.5266352282796 35.098 0.26797 34.875 34.711 34.979 -0.2224 27 11 3 0 0 0 0.39863 1 18365 18365 12.241 0.74595 1 4859100 + 62602 21401 41723 42659 73007 73007 0.0021610887151837233 SYSGTFHSL 9 Unmodified _SYSGTFHSL_ 0 0 0 nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000219481|ENST00000430580|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7323913574219 2 499.732532 997.45051 0.65576 0.00032771 -1.829 -0.00091401 -1.1732 -0.0005863 499.73117555512357 38.567 0.75916 38.567 38.376 39.135 0 67 38 4 0 0 0 0.022193 2 20557 20557;20662 61.357 32.871 1 13854000 62603 10547 41724 42660 73008;73009 73008 -0.0483168237889231 SYSGTFHSL 9 Unmodified _SYSGTFHSL_ 0 0 0 nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000219481|ENST00000430580|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7317810058594 2 499.732532 997.45051 -0.1933 -9.6596E-05 0.54114 0.00027043 0.34785 0.00017383 499.73293750642404 38.843 0.23743 38.556 38.435 38.673 -0.28687 24 10 3 0 0 0 0.022193 1 20453 20453 61.357 39.611 1 4736000 62604 10547 41724 42660 73010 73010 -0.0483168237889231 SYSGTFHSL 9 Unmodified _SYSGTFHSL_ 0 0 0 nc|ENSG00000219481|Q3BBV0|NBPF1;ENSG00000219481|ENST00000430580|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 nc|ENSG00000219481|Q3BBV0|NBPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.732421875 2 499.732532 997.45051 0.80812 0.00040384 -1.1819 -0.00059061 -0.37374 -0.00018677 499.73209543422354 43.237 0.36126 38.473 38.288 38.65 -4.7648 43 25 2 0 0 0 0.031062 1 26197 26197 54.774 14.816 1 33682000 62605 10547 41724 42660 73011 73011 -0.0483168237889231 SYSGVTQLL 9 Unmodified _SYSGVTQLL_ 0 0 0 ENST00000511767.3_1_4:95376439-95471092:+|nuORF ENST00000511767.3_1_4:95376439-95471092:+|nuORF ENST00000511767.3_1_4:95376439-95471092:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 967.511474609375 1 967.509488 966.502212 0.07621 7.3734E-05 0.37097 0.00035892 0.44718 0.00043265 967.5100906931161 65.09 0.1496 65.09 64.994 65.143 0 11 6 2 0 0 0 0.14602 1 36298 36298 28.487 11.545 1 423590 62606 14611 41725 42661 73012 73012 0.017620613150143072 SYSHIMALI 9 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ SYSHIM(1)ALI SYSHIM(67)ALI 0 0 1 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7681274414062 2 525.76806 1049.52157 0.31871 0.00016757 0.22084 0.00011611 0.53954 0.00028367 525.7683400235445 53.364 0.54082 52.913 52.682 53.223 -0.45173 98 26 5 0 0 0 0.016184 2 28837 28837;28940 67.344 38.857 1 31303000 62607 6750 41726 42662 73013;73014 73013 1173 -0.0012130566574342083 SYSHIMALI 9 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ SYSHIM(1)ALI SYSHIM(57)ALI 0 0 1 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7681274414062 2 525.76806 1049.52157 0.26102 0.00013724 1.0428 0.00054826 1.3038 0.0006855 525.7687338357448 53.035 0.45568 52.971 52.742 53.198 -0.063423 54 22 3 0 0 0 0.026094 1 28696 28696 57.471 28.985 1 5960600 62608 6750 41726 42662 73015 73015 1173 -0.0012130566574342083 SYSHIMALI 9 Oxidation (M) _SYSHIM(Oxidation (M))ALI_ SYSHIM(1)ALI SYSHIM(42)ALI 0 0 1 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7682495117188 2 525.76806 1049.52157 1.4852 0.00078088 0.079379 4.1735E-05 1.5646 0.00082261 525.7680943972402 58.606 0.60609 52.532 52.387 52.993 -6.0745 61 33 2 0 0 0 0.06187 1 37633 37633 42.095 17.421 1 38089000 62609 6750 41726 42662 73016 73016 1173 -0.0012130566574342083 SYSHIMALI 9 Unmodified _SYSHIMALI_ 0 0 0 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7703247070312 2 517.770603 1033.52665 0.48902 0.0002532 -0.63603 -0.00032932 -0.14701 -7.6119E-05 517.7705178398979 68.21 0.29087 67.729 67.559 67.849 -0.48116 26 13 3 0 0 0 0.052168 1 37262 37262 44.407 19.733 1 3255400 62610 6750 41726 42663 73017 73017 0.011229981968881475 SYSHIMALI 9 Unmodified _SYSHIMALI_ 0 0 0 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7703247070312 2 517.770603 1033.52665 0.36603 0.00018952 -0.010765 -5.5736E-06 0.35527 0.00018395 517.770612032236 67.699 0.32047 67.717 67.572 67.893 0.018028 23 15 2 0 0 0 0.023164 1 37183 37183 60.39 37.241 1 4281500 62611 6750 41726 42663 73018 73018 0.011229981968881475 SYSILLIVF 9 Unmodified _SYSILLIVF_ 0 0 0 REV__ENSG00000174982|ENST00000641692|OR4S2 REV__ENSG00000174982|ENST00000641692|OR4S2 MSMS AL20221201_MKP_PDAC_01 4 352.2122802734375 3 352.210954 1053.61103 NaN NaN NaN NaN NaN NaN NaN 71.924 1 65.748 65.248 66.248 -6.1757 0 0 0 0.84369 1 47046 47046 1.1933 0 1 + 62612 22830 41727 42664 73019 73019 0.08637272285272957 SYSLLSRYPP 10 Unmodified _SYSLLSRYPP_ 0 0 0 REV__ENST00000515545.5_1_3:126180225-126180375:-|nuORF REV__ENST00000515545.5_1_3:126180225-126180375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.81103515625 2 591.811313 1181.60807 0.088571 5.2417E-05 0.68482 0.00040528 0.77339 0.0004577 591.8116337007457 69.257 0.44147 68.777 68.506 68.948 -0.48071 58 18 4 0 0 0 0.23548 1 37796 37796 31.268 10.854 1 21717000 + 62613 28218 41728 42665 73020 73020 0.02453397160456916 SYSLLSRYPP 10 Unmodified _SYSLLSRYPP_ 0 0 0 REV__ENST00000515545.5_1_3:126180225-126180375:-|nuORF REV__ENST00000515545.5_1_3:126180225-126180375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8109130859375 2 591.811313 1181.60807 0.51733 0.00030616 -0.065965 -3.9039E-05 0.45137 0.00026713 591.8109920393143 68.734 0.46379 68.759 68.54 69.004 0.025154 64 21 4 0 0 0 0.10424 2 37699 37699;37804 45.7 12.914 1 41395000 + 62614 28218 41728 42665 73021;73022 73021 0.02453397160456916 SYSLMRQKF 9 Unmodified _SYSLMRQKF_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7693481445312 2 580.300059 1158.58556 0.25791 0.00014967 -3.0761 -0.001785 -2.8182 -0.0016354 580.8001134168712 65.305 0.27827 64.821 64.64 64.918 -0.48428 16 12 2 0 0 0 0.20727 1 35573 35573 7.9102 1.187 1 930670 62615 10828 41729 42666 73023 73023 0.012614744912070819 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(67)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7557373046875 2 528.755149 1055.49575 1.1366 0.00060098 -0.76906 -0.00040665 0.36753 0.00019434 528.7547652744636 54.516 0.44383 54.516 54.197 54.641 0 67 19 5 0 0 0 0.016184 2 30322 30222;30322 67.344 44.195 1 129720000 62616 3200 41730 42667 73024;73025 73025 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(67)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.755126953125 2 528.755149 1055.49575 0.81953 0.00043333 -1.5112 -0.00079906 -0.69168 -0.00036573 528.754519420715 54.777 0.54955 54.777 54.62 55.17 0 67 23 5 0 0 0 0.016184 1 30432 30432 67.344 38.262 1 123880000 62617 3200 41730 42667 73026 73026 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(85)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.75439453125 2 528.755149 1055.49575 0.18911 9.9993E-05 0.064714 3.4218E-05 0.25382 0.00013421 528.7551917905748 55.102 0.28173 54.624 54.471 54.753 -0.47798 55 13 5 0 0 0 0.0090851 1 29857 29857 85.357 43.517 1 56604000 62618 3200 41730 42667 73027 73027 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(85)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7553100585938 2 528.755149 1055.49575 0.30057 0.00015893 -0.57145 -0.00030216 -0.27087 -0.00014323 528.7548663867498 55.356 0.84756 54.878 54.733 55.58 -0.47798 85 40 5 0 0 0 0.0090851 2 30058 29962;30058 85.357 45.407 1 49290000 62619 3200 41730 42667 73028;73029 73029 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(57)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7549438476562 2 528.755149 1055.49575 0.30683 0.00016224 0.50627 0.00026769 0.8131 0.00042993 528.7553494408564 54.763 0.24395 54.696 54.56 54.804 -0.066936 27 11 3 0 0 0 0.026094 1 29729 29729 57.471 34.323 1 4207400 62620 3200 41730 42667 73030 73030 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(85)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.75390625 2 528.755149 1055.49575 0.28811 0.00015234 -0.79864 -0.00042228 -0.51053 -0.00026994 528.7547333087292 55.008 0.2156 54.94 54.841 55.057 -0.068737 21 10 3 0 0 0 0.0090851 1 29872 29872 85.357 56.275 1 4152800 62621 3200 41730 42667 73031 73031 568 -0.029781999080341848 SYSMIVNNL 9 Oxidation (M) _SYSM(Oxidation (M))IVNNL_ SYSM(1)IVNNL SYSM(85)IVNNL 0 0 1 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.756103515625 2 528.755149 1055.49575 1.4424 0.00076265 -0.24713 -0.00013067 1.1952 0.00063199 528.7550297316993 62.339 0.82975 56.164 55.89 56.719 -6.1757 81 44 2 0 0 0 0.0090851 2 40379 40246;40379 85.357 49.23 1 195080000 62622 3200 41730 42667 73032;73033 73033 568 -0.029781999080341848 SYSMIVNNL 9 Unmodified _SYSMIVNNL_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7582397460938 2 520.757692 1039.50083 NaN NaN NaN NaN NaN NaN NaN 65.703 1 65.703 65.203 66.203 0 0 0 0 0.36554 1 36644 36644 21.747 5.8995 1 62623 3200 41730 42668 73034 73034 -0.017338960454253538 SYSMIVNNL 9 Unmodified _SYSMIVNNL_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7586059570312 2 520.757692 1039.50083 0.023698 1.2341E-05 -0.0056881 -2.9621E-06 0.01801 9.379E-06 520.7578701151738 66.234 0.40123 65.751 65.563 65.964 -0.48323 44 21 3 0 0 0 0.016184 2 36192 36092;36192 67.344 50.402 1 11691000 62624 3200 41730 42668 73035;73036 73036 -0.017338960454253538 SYSMIVNNL 9 Unmodified _SYSMIVNNL_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;ENST00000469173.1_1_1:174976108-174977843:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.757568359375 2 520.757692 1039.50083 1.059 0.00055151 -0.74568 -0.00038832 0.31337 0.00016319 520.7574110375873 72.334 0.73232 66.158 65.83 66.562 -6.1757 109 37 4 0 0 0 0.016184 4 47212 47212;47326;47434;47544 67.344 50.402 1 181130000 62625 3200 41730 42668 73037;73038;73039;73040 73037 -0.017338960454253538 SYSPAHARL 9 Unmodified _SYSPAHARL_ 0 0 0 nc|ENSG00000179348|P23769-2|GATA2;ENSG00000179348|ENST00000341105|GATA2 nc|ENSG00000179348|P23769-2|GATA2 nc|ENSG00000179348|P23769-2|GATA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.2629699707031 2 501.261791 1000.50903 0.35812 0.00017951 -0.26791 -0.00013429 0.090209 4.5218E-05 501.2614928690278 24.227 0.31464 21.4 21.231 21.545 -2.8273 32 17 3 0 0 0 0.05447 1 13123 13123 43.858 22.112 1 6767900 62626 8830 41731 42669 73041 73041 0.008794189862214807 SYSPLLREF 9 Unmodified _SYSPLLREF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5-CABLES2|1|fusion;LAMA5-CABLES2|2|fusion ENSG00000130702|ENST00000252999|LAMA5;LAMA5-CABLES2|1|fusion ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2926025390625 2 556.292756 1110.57096 0.4337 0.00024126 0.027042 1.5043E-05 0.46074 0.00025631 556.2927513905055 62.907 0.4169 62.907 62.679 63.096 0 41 17 3 0 0 0 0.19361 2 35045 35045;35158 23.79 13.716 1 5012900 62627 4239;15975 41732 42670 73042;73043 73042 0.02009725614720992 SYSPLLREF 9 Unmodified _SYSPLLREF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5-CABLES2|1|fusion;LAMA5-CABLES2|2|fusion ENSG00000130702|ENST00000252999|LAMA5;LAMA5-CABLES2|1|fusion ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2932739257812 2 556.292756 1110.57096 0.53683 0.00029863 0.50696 0.00028202 1.0438 0.00058065 556.2929878006032 63.291 0.67148 62.804 62.603 63.274 -0.48617 80 30 3 0 0 0 0.036857 2 34555 34459;34555 51.63 22.548 1 47025000 62628 4239;15975 41732 42670 73044;73045 73045 0.02009725614720992 SYSPLLREF 9 Unmodified _SYSPLLREF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5-CABLES2|1|fusion;LAMA5-CABLES2|2|fusion ENSG00000130702|ENST00000252999|LAMA5;LAMA5-CABLES2|1|fusion ENSG00000130702|ENST00000252999|LAMA5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8140869140625 2 556.292756 1110.57096 0.53969 0.00030023 -0.84438 -0.00046972 -0.30469 -0.0001695 556.7937411465457 62.911 0.2979 62.889 62.771 63.069 -0.021614 25 14 2 0 0 0 0.18924 1 34404 34404 19.362 10.769 1 2890000 62629 4239;15975 41732 42670 73046 73046 0.02009725614720992 SYSPLLREF 9 Unmodified _SYSPLLREF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5-CABLES2|1|fusion;LAMA5-CABLES2|2|fusion ENSG00000130702|ENST00000252999|LAMA5;LAMA5-CABLES2|1|fusion ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2919311523438 2 556.292756 1110.57096 0.95824 0.00053306 -0.3665 -0.00020388 0.59173 0.00032918 556.292544844262 70.101 0.82835 63.926 63.525 64.353 -6.1757 67 46 2 0 0 0 0.036857 1 45992 45992 51.63 18.844 1 46286000 62630 4239;15975 41732 42670 73047 73047 0.02009725614720992 SYSPQAFKF 9 Unmodified _SYSPQAFKF_ 0 0 0 ENST00000441107.5_1_6:149982867-150018260:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF ENST00000441107.5_1_6:149982867-150018260:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.76611328125 2 537.766374 1073.5182 -0.024342 -1.309E-05 0.31719 0.00017058 0.29285 0.00015749 537.7664848536903 54.164 0.28011 54.097 53.981 54.262 -0.066936 32 13 3 0 0 0 0.06294 1 29403 29403 41.84 23.693 1 4015600 62631 4288 41733 42671 73048 73048 -0.01562232448100076 SYSPSRVLI 9 Unmodified _SYSPSRVLI_ 0 0 0 nc|ENSG00000124535|Q96S55-4|WRNIP1;nc|ENSG00000124535|Q96S55-3|WRNIP1;nc|ENSG00000124535|Q96S55-2|WRNIP1;ENSG00000124535|ENST00000380773|WRNIP1 nc|ENSG00000124535|Q96S55-4|WRNIP1 nc|ENSG00000124535|Q96S55-4|WRNIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2876586914062 2 511.287474 1020.5604 0.41715 0.00021328 0.38318 0.00019592 0.80033 0.0004092 511.2876843657226 47.749 0.16798 47.397 47.328 47.496 -0.3526 12 7 2 0 0 0 0.1685 1 25651 25651 26.268 5.8145 1 2625600 62632 3795 41734 42672 73049 73049 0.050937429602981865 SYSPYVTEL 9 Unmodified _SYSPYVTEL_ 0 0 0 ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44;CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant ENSG00000164118|ENST00000503780|CEP44 ENSG00000164118|ENST00000503780|CEP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7540283203125 2 529.755672 1057.49679 0.38489 0.0002039 -1.3654 -0.00072334 -0.98053 -0.00051944 529.7549284925157 58.874 0.26614 58.874 58.699 58.965 0 17 11 2 0 0 0 0.2143 1 32763 32763 21.747 3.6117 1 2545800 62633 7144 41735 42673 73050 73050 -0.029656622674792743 SYSPYVTELI 10 Unmodified _SYSPYVTELI_ 0 0 0 ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44;CEP44|p.Q95Afs*17|1|0.13|ENSG00000164118|chr4:174303740-174303741|-/A|frameshift_variant ENSG00000164118|ENST00000503780|CEP44 ENSG00000164118|ENST00000503780|CEP44 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.879150390625 3 391.200895 1170.58086 -0.17872 -6.9915E-05 -2.3856 -0.00093326 -2.5643 -0.0010032 391.19980600543926 41.393 0.12376 41.391 41.298 41.422 -0.0017929 7 5 2 0 0 0 0.23767 1 22106 22106 3.5871 0 1 2186600 62634 7144 41736 42674 73051 73051 0.002388688294331587 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7354125976562 2 516.735271 1031.45599 -0.44284 -0.00022883 1.1064 0.00057174 0.6636 0.0003429 516.7358369844095 48.661 0.44027 48.661 48.433 48.874 0 68 20 4 0 0 0 0.070838 2 26686 26686;26803 39.957 14.558 1 105150000 62635 8223 41737 42675 73052;73053 73052 -0.05848003587107087 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7355346679688 2 516.735271 1031.45599 0.2715 0.00014029 0.48962 0.000253 0.76112 0.0003933 516.7355075046625 48.986 0.33138 48.614 48.446 48.778 -0.37172 40 16 3 0 0 0 0.042911 1 26303 26303 48.346 16.04 1 7927000 62636 8223 41737 42675 73054 73054 -0.05848003587107087 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7357177734375 2 516.735271 1031.45599 0.82053 0.000424 0.21589 0.00011156 1.0364 0.00053556 516.7353175121125 55.697 0.60068 49.776 49.507 50.108 -5.9211 101 35 4 0 0 0 0.014417 3 35601 35344;35471;35601 69.105 29.108 1 217660000 62637 8223 41737 42675 73055;73056;73057 73057 -0.05848003587107087 SYSQSSNLF 9 Unmodified _SYSQSSNLF_ 0 0 0 ENSG00000172466|ENST00000261332|ZNF24;ENST00000589881.5_1_18:32917198-32917747:-|nuORF ENSG00000172466|ENST00000261332|ZNF24 ENSG00000172466|ENST00000261332|ZNF24 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.735271 1031.45599 0.4078 0.00021072 0.80851 0.00041779 1.2163 0.00062851 516.7356362161557 48.65 0.19825 48.606 48.455 48.654 -0.04369 -0.021026 -7.7004E-05 NaN 48.346 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 919070 62638 8223 41737 42675 -0.05848003587107087 SYSRSFTHFI 10 Unmodified _SYSRSFTHFI_ 0 0 0 REV__ENST00000590307.1_1_18:77636237-77659813:+|nuORF REV__ENST00000590307.1_1_18:77636237-77659813:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5382690429688 3 415.540134 1243.59857 -0.062479 -2.5963E-05 -2.3634 -0.00098209 -2.4259 -0.0010081 415.53858977399733 17.664 0.10975 17.669 17.597 17.707 0.0050564 11 7 2 0 0 0 0.67033 2 8922 8918;8922 3.3196 0 1 1337500 + 62639 23037 41738 42676 73058;73059 73059 -0.013483711250501074 SYSRSHSRIFS 11 Unmodified _SYSRSHSRIFS_ 0 0 0 REV__RBBP6|p.S720I|1|0.07|ENSG00000122257|chr16:24568849-24568849|G/T|missense_variant REV__RBBP6|p.S720I|1|0.07|ENSG00000122257|chr16:24568849-24568849|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.3307495117188 2 663.8311 1325.64765 -0.11464 -7.6099E-05 0.098742 6.5548E-05 -0.015894 -1.0551E-05 664.3325162621213 61.82 0.28818 61.82 61.663 61.951 0 24 12 3 0 0 0 0.68427 1 34454 34454 5.7319 0 1 1778900 + 62640 30085 41739 42677 73060 73060 -0.0021508283609819046 SYSSIASEF 9 Unmodified _SYSSIASEF_ 0 0 0 ENSG00000166479|ENST00000299608|TMX3;nc|ENSG00000166479|Q96JJ7-2|TMX3 ENSG00000166479|ENST00000299608|TMX3 ENSG00000166479|ENST00000299608|TMX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.44189453125 1 990.441468 989.434192 0.38423 0.00038056 0.0026255 2.6004E-06 0.38686 0.00038316 990.4412784273294 57.264 0.28421 57.264 57.135 57.419 0 25 12 3 0 0 0 0.14602 1 31836 31836 28.487 11.545 1 2332100 62641 7496 41740 42678 73061 73061 -0.060948083356493044 SYSSSPSLY 9 Unmodified _SYSSSPSLY_ 0 0 0 REV__ENSG00000172289|ENST00000307552|OR10V1 REV__ENSG00000172289|ENST00000307552|OR10V1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.4437866210938 1 990.441468 989.434192 0.38423 0.00038056 0.0026255 2.6004E-06 0.38686 0.00038316 990.4412784273294 57.264 0.28421 57.264 57.135 57.419 0 25 12 3 0 0 0 0.49272 1 31948 31948 7.9102 0 1 2332100 + 62642 22639 41741 42679 73062 73062 -0.060948083356493044 SYSSTFHSL 9 Unmodified _SYSSTFHSL_ 0 0 0 ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12 ENSG00000268043|ENST00000698835|NBPF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.738525390625 2 514.737814 1027.46108 0.28394 0.00014615 -1.2852 -0.00066157 -1.0013 -0.00051541 514.7378580894851 39.54 0.35887 39.54 39.381 39.74 0 39 16 4 0 0 0 0.013323 1 21163 21163 71.134 42.647 1 13407000 62643 6918;10870 41742 42680 73063 73063 -0.05155699724468832 SYSSTFHSL 9 Unmodified _SYSSTFHSL_ 0 0 0 ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20;ENSG00000266338|ENST00000581897|NBPF15;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12 ENSG00000268043|ENST00000698835|NBPF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7378540039062 2 514.737814 1027.46108 0.50351 0.00025918 0.12704 6.5395E-05 0.63056 0.00032457 514.7376852017302 44.308 0.41562 39.456 39.232 39.648 -4.852 76 29 3 0 0 0 0.0082281 2 26938 26938;27077 92.822 58.72 1 47435000 62644 6918;10870 41742 42680 73064;73065 73064 -0.05155699724468832 SYTALFPQL 9 Unmodified _SYTALFPQL_ 0 0 0 ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-2|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 ENSG00000007202|ENST00000528896|BLTP2 MSMS AL20221201_MKP_PDAC_01 4 520.2749633789062 2 520.276575 1038.5386 NaN NaN NaN NaN NaN NaN NaN 97.64 1 91.464 90.964 91.964 -6.1757 0 0 0 0.10545 1 64704 64704 42.095 5.9675 1 62645 359 41743 42681 73066 73066 0.020869382117098212 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.4678344726562 1 957.467623 956.460347 -0.15968 -0.00015288 0.6925 0.00066305 0.53282 0.00051016 957.4681497069319 61.832 0.35495 61.832 61.641 61.996 0 38 15 3 0 0 0 0.0026776 2 34499 34399;34499 128.37 64.129 1 9656400 62646 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73067;73068 73068 -0.01962494373537993 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2384643554688 2 479.23745 956.460347 0.17015 8.1544E-05 0.44432 0.00021294 0.61448 0.00029448 479.23750236823025 61.839 0.33295 61.839 61.641 61.974 0 32 14 3 0 0 0 0.070838 2 34419 34419;34527 39.957 23.015 1 4327100 62647 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73069;73070 73069 -0.01962494373537993 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 957.46728515625 1 957.467623 956.460347 0.63031 0.0006035 -0.20697 -0.00019816 0.42334 0.00040534 957.4673343333619 62.329 0.40183 61.841 61.638 62.04 -0.48764 44 18 3 0 0 0 0.0026776 2 34008 33899;34008 128.37 64.129 1 14381000 62648 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73071;73072 73072 -0.01962494373537993 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.237548828125 2 479.23745 956.460347 0.83109 0.00039829 -0.68356 -0.00032759 0.14752 7.0699E-05 479.2370716591888 62.348 0.31572 61.86 61.681 61.997 -0.48764 27 14 2 0 0 0 0.026094 1 33927 33927 57.471 36.6 1 3965900 62649 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73073 73073 -0.01962494373537993 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.4688720703125 1 957.467623 956.460347 0.81316 0.00077857 0.11876 0.00011371 0.93192 0.00089228 957.467629077594 69.153 0.53828 62.977 62.705 63.243 -6.1757 68 29 3 0 0 0 0.0026776 3 45030 45030;45151;45286 128.37 64.129 1 84016000 62650 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73074;73075;73076 73074 -0.01962494373537993 SYTANLAAF 9 Unmodified _SYTANLAAF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENST00000533291.5_1_11:120531027-120833419:+|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5;nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;ENSG00000152208|ENST00000282020|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000171189|P39086|GRIK1;ENSG00000171189|ENST00000327783|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;nc|ENSG00000155511|P42261-3|GRIA1;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000125675|P42263|GRIA3;ENSG00000125675|ENST00000620443|GRIA3;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000163873|Q13003-2|GRIK3;nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000152208|O43424-2|GRID2;nc|ENSG00000183454|Q12879-2|GRIN2A;nc|ENSG00000171189|P39086-2|GRIK1;nc|ENSG00000120251|P42262-4|GRIA2;ENSG00000149403|ENST00000527524|GRIK4;ENSG00000152578|ENST00000282499|GRIA4;ENSG00000161509|ENST00000293190|GRIN2C;nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000487395.1_1_6:102376237-102441071:+|nuORF ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.238525390625 2 479.23745 956.460347 1.0402 0.00049851 0.29712 0.00014239 1.3373 0.0006409 479.2376945958465 69.224 0.44978 63.048 62.743 63.193 -6.1757 56 24 3 0 0 0 0.0095811 2 45093 45093;45223 81.613 41.164 1 51328000 62651 2325;6792;9151;10892;3501;7088;7193;8075;6198;9085;6168;6005;8627;14203 41744 42682 73077;73078 73077 -0.01962494373537993 SYTATYYIYDL 11 Unmodified _SYTATYYIYDL_ 0 0 0 ENSG00000078098|ENST00000188790|FAP;ENST00000480838.1_1_2:163066458-163099837:-|nuORF ENSG00000078098|ENST00000188790|FAP ENSG00000078098|ENST00000188790|FAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.8209228515625 2 686.819001 1371.62345 0.28961 0.00019891 0.67921 0.00046649 0.96882 0.00066541 686.819184353345 21.067 0.14786 21.078 20.998 21.146 0.010551 25 13 3 0 0 0 0.57006 1 10762 10762 21.537 12.792 1 3224800 62652 1236 41745 42683 73079 73079 -0.047497808330035696 SYTCTCHEGFT 11 Unmodified _SYTCTCHEGFT_ 0 0 0 MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.7374267578125 2 624.736631 1247.45871 0.35267 0.00022033 -0.5203 -0.00032505 -0.16763 -0.00010472 624.7369014708584 58.308 0.38026 58.308 58.131 58.511 0 38 14 4 0 0 0 0.68427 2 32428 32428;32534 5.7319 1.7875 1 4373700 62653 15985 41746 42684 73080;73081 73080 -0.15512239516101545 SYTCTCHEGFT 11 Unmodified _SYTCTCHEGFT_ 0 0 0 MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MATN1|p.A248T|1|0.17|ENSG00000162510|chr1:30716838-30716838|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2391357421875 2 624.736631 1247.45871 0.19041 0.00011896 0.0782 4.8854E-05 0.26861 0.00016781 625.2388971252396 58.965 0.20934 58.475 58.369 58.579 -0.49079 20 9 3 0 0 0 0.68427 1 32085 32085 5.7319 1.7875 1 1746000 62654 15985 41746 42684 73082 73082 -0.15512239516101545 SYTDFHIDF 9 Unmodified _SYTDFHIDF_ 0 0 0 nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENSG00000006459|ENST00000397560|KDM7A;ENST00000490635.1_1_X:54026257-54040884:-|nuORF;nc|ENSG00000172943|Q9UPP1-5|PHF8;nc|ENSG00000172943|Q9UPP1-4|PHF8;nc|ENSG00000172943|Q9UPP1-3|PHF8;ENSG00000172943|ENST00000338154|PHF8;nc|ENSG00000172943|Q9UPP1|PHF8 nc|ENSG00000006459|Q6ZMT4-2|KDM7A;ENST00000490635.1_1_X:54026257-54040884:-|nuORF ENST00000490635.1_1_X:54026257-54040884:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7505493164062 2 572.750921 1143.48729 0.068532 3.9252E-05 -0.0162 -9.2784E-06 0.052332 2.9973E-05 572.7505135287192 71.542 0.2935 71.542 71.405 71.699 0 27 12 3 0 0 0 0.42049 1 39838 39838 16.942 7.5949 1 842640 62655 8273;337 41747 42685 73083 73083 -0.07871430552995662 SYTDNIIALF 10 Unmodified _SYTDNIIALF_ 0 0 0 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2;REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1;REV__nc|ENSG00000118762|Q13563-5|PKD2 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7978515625 2 578.797872 1155.58119 0.89785 0.00051967 0.43173 0.00024989 1.3296 0.00076956 578.7976669582474 100.71 0.098 94.535 94.472 94.57 -6.1757 9 6 2 0 0 0 0.13391 1 67435 67435 41.84 0 1 25220000 + 62656 18566;17636;19168 41748 42686 73084 73084 0.009622885492717614 SYTFIHIL 8 Unmodified _SYTFIHIL_ 0 0 0 ENST00000584430.1_1_18:856598-856898:+|nuORF ENST00000584430.1_1_18:856598-856898:+|nuORF ENST00000584430.1_1_18:856598-856898:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2742614746094 2 497.273835 992.533118 1.0212 0.00050782 -1.1226 -0.00055823 -0.10137 -5.0407E-05 497.2738099086425 57.228 0.47316 51.2 50.988 51.461 -6.0275 52 26 3 0 0 0 0.44122 2 36668 36539;36668 40.449 8.1431 1 61713000 62657 15594 41749 42687 73085;73086 73086 0.03655259419895174 SYTFYMGIFLM 11 Unmodified _SYTFYMGIFLM_ 0 0 0 REV__ENSG00000188921|ENST00000495827|HACD4 REV__ENSG00000188921|ENST00000495827|HACD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 686.8201293945312 2 686.819435 1371.62432 -0.34586 -0.00023754 1.4306 0.00098256 1.0847 0.00074501 686.8206098115176 21.053 0.27624 21.081 20.911 21.187 0.028355 37 13 4 0 0 0 0.62014 1 10631 10631 18.146 12.849 1 6112700 + 62658 23745 41750 42688 73087 73087 -0.04662980989314747 SYTFYMGIFLM 11 Unmodified _SYTFYMGIFLM_ 0 0 0 REV__ENSG00000188921|ENST00000495827|HACD4 REV__ENSG00000188921|ENST00000495827|HACD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 686.819435 1371.62432 -0.49535 -0.00034022 1.5813 0.0010861 1.086 0.00074587 686.8205569982368 21.135 0.31272 21.135 20.964 21.277 0 0.026964 3.5301E-05 NaN 18.146 174 51 4 NaN NaN NaN NaN 0 NaN NaN 0 24202000 + 62659 23745 41750 42688 -0.04662980989314747 SYTFYMGIFLM 11 Unmodified _SYTFYMGIFLM_ 0 0 0 REV__ENSG00000188921|ENST00000495827|HACD4 REV__ENSG00000188921|ENST00000495827|HACD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 686.819435 1371.62432 -0.34586 -0.00023754 1.4306 0.00098256 1.0847 0.00074501 686.8206098115176 21.053 0.27624 21.081 20.911 21.187 0.028355 -0.026964 -0.00017177 NaN 18.146 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 6112700 + 62660 23745 41750 42688 -0.04662980989314747 SYTGKHFVRGQ 11 Unmodified _SYTGKHFVRGQ_ 0 0 0 REV__ENSG00000264717|ENST00000576178|NPY4R2 REV__ENSG00000264717|ENST00000576178|NPY4R2 MSMS AL20221201_MKP_PDAC_01 4 640.331787109375 2 640.330736 1278.64692 NaN NaN NaN NaN NaN NaN NaN 42.148 1 37.463 36.963 37.963 -4.6846 0 0 0 0.72751 1 25419 25419 24.991 11.948 1 + 62661 24142 41751 42689 73088 73088 0.018741225148460217 SYTIMTCLFF 10 Unmodified _SYTIMTCLFF_ 0 0 0 REV__ENST00000319332.9_1_3:189705443-189706767:-|nuORF REV__ENST00000319332.9_1_3:189705443-189706767:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.1922302246094 3 409.192578 1224.5559 1.2739 0.00052129 -1.1675 -0.00047772 0.10649 4.3573E-05 409.1920550278221 21.747 0.17136 19.012 18.9 19.072 -2.7348 14 8 2 0 0 0 0.66569 1 11648 11648 3.5871 0.26742 1 1590700 + 62662 25493 41752 42690 73089 73089 -0.04739225569164773 SYTKGTLHPN 10 Unmodified _SYTKGTLHPN_ 0 0 0 REV__ENSG00000112902|ENST00000382496|SEMA5A REV__ENSG00000112902|ENST00000382496|SEMA5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2872314453125 2 559.285463 1116.55637 0.78983 0.00044174 1.3646 0.00076318 2.1544 0.0012049 559.2863649645334 18.134 0.25246 15.513 15.341 15.594 -2.6215 37 20 2 0 0 0 0.53722 1 9576 9576 14.405 5.0223 1 2855200 + 62663 18843 41753 42691 73090 73090 0.002756534665650179 SYTLIPTSN 9 Unmodified _SYTLIPTSN_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|446|3|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|446|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2559204101562 2 498.25584 994.497126 0.907 0.00045192 0.84176 0.00041941 1.7488 0.00087133 498.25612294800106 35.563 0.39311 31.37 31.177 31.57 -4.1928 59 24 3 0 0 0 0.1773 1 20589 20589 25.399 1.3787 1 35950000 + 62664 29380 41754 42692 73091 73091 -0.0003424254762194323 SYTNCLQKI 9 Carbamidomethyl (C) _SYTNC(Carbamidomethyl (C))LQKI_ SYTNC(1)LQKI SYTNC(140)LQKI 0 1 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7819213867188 2 563.781699 1125.54884 0.86737 0.00048901 -0.011871 -6.6928E-06 0.8555 0.00048232 563.7818280495641 43.557 0.43842 38.792 38.581 39.019 -4.7648 82 27 4 0 0 0 0.0013034 3 26368 26350;26368;26506 137.42 77.35 1 45273000 62665 3815 41755 42693 73092;73093;73094 73093 387 -0.008908221253705051 SYTNECSGSYY 11 Unmodified _SYTNECSGSYY_ 0 0 0 REV__ENSG00000135862|ENST00000258341|LAMC1 REV__ENSG00000135862|ENST00000258341|LAMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 425.1607055664062 3 425.160771 1272.46048 -0.31265 -0.00013293 -0.82332 -0.00035004 -1.136 -0.00048297 425.1603505693355 23.606 0.26547 23.606 23.469 23.735 0 38 13 4 0 0 0 0.72952 1 12030 12030 0.50596 0 1 1534600 + 62666 20103 41756 42694 73095 73095 -0.16484907226481482 SYTPTVVHI 9 Unmodified _SYTPTVVHI_ 0 0 0 REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF REV__ENST00000531778.1_1_11:134251834-134254167:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7747497558594 2 508.7742 1015.53385 0.80299 0.00040854 -0.68528 -0.00034865 0.11771 5.9888E-05 508.7736884868664 71.798 0.37228 71.837 71.642 72.014 0.039024 51 17 4 0 0 0 0.39863 1 39605 39605 12.532 0 1 18650000 + 62667 18681 41757 42695 73096 73096 0.02670054068948957 SYTPVLNQF 9 Unmodified _SYTPVLNQF_ 0 0 0 ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B ENSG00000198722|ENST00000635942|UNC13B ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7726440429688 2 534.771657 1067.52876 NaN NaN NaN NaN NaN NaN NaN 65.903 1 65.419 64.919 65.919 -0.48428 0 0 0 0.17247 1 35977 35977 34.102 14.663 1 62668 10134 41758 42696 73097 73097 -0.0023024979368528875 SYTRDLPHI 9 Unmodified _SYTRDLPHI_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8609924316406 3 367.861096 1100.56146 0.11415 4.199E-05 -0.27865 -0.00010251 -0.16451 -6.0516E-05 367.8609803085993 39.586 0.47133 39.586 39.321 39.792 0 72 22 4 0 0 0 0.094149 2 21229 21115;21229 32.037 21.238 1 48731000 62669 4956 41759 42697 73098;73099 73099 0.015199573291738488 SYTRDLPHI 9 Unmodified _SYTRDLPHI_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.289306640625 2 551.288005 1100.56146 0.42544 0.00023454 -0.45705 -0.00025197 -0.031609 -1.7426E-05 551.2879519512172 39.605 0.68681 39.605 39.362 40.049 0 69 33 3 0 0 0 0.011671 1 21187 21187 75.761 37.787 1 23410000 62670 4956 41759 42697 73100 73100 0.015199573291738488 SYTRDLPHI 9 Unmodified _SYTRDLPHI_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8611755371094 3 367.861096 1100.56146 0.10867 3.9976E-05 -0.21976 -8.0843E-05 -0.11109 -4.0867E-05 367.8609262168098 39.888 0.43228 39.591 39.371 39.804 -0.29716 51 20 4 0 0 0 0.15471 1 21114 21114 20.581 12.972 1 10127000 62671 4956 41759 42697 73101 73101 0.015199573291738488 SYTRDLPHI 9 Unmodified _SYTRDLPHI_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8609008789062 3 367.861096 1100.56146 1.1734 0.00043166 -1.4831 -0.00054557 -0.30965 -0.00011391 367.86043008817774 44.28 0.46121 39.427 39.215 39.677 -4.852 99 32 4 0 0 0 0.094149 3 27043 26911;27043;27176 26.021 15.221 1 94767000 62672 4956 41759 42697 73102;73103;73104 73103 0.015199573291738488 SYTRDLPHI 9 Unmodified _SYTRDLPHI_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENST00000531200.1_1_11:102398162-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 551.288005 1100.56146 0.48941 0.00026981 -0.070147 -3.8671E-05 0.41927 0.00023114 551.2876322927742 44.162 0.46529 39.31 39.117 39.582 -4.852 -0.1474 0.00023158 NaN 75.761 61 33 3 NaN NaN NaN NaN 0 NaN NaN 0 60432000 62673 4956 41759 42697 0.015199573291738488 SYTRLFSNF 9 Unmodified _SYTRLFSNF_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;ENST00000490112.1_1_3:33438535-33441732:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.7826538085938 2 567.782556 1133.55056 0.49692 0.00028214 0.59279 0.00033657 1.0897 0.00061872 567.7828440502143 63.122 0.44835 63.1 62.869 63.318 -0.021614 79 22 5 0 0 0 3.8138E-07 2 34453 34453;34553 165.72 115.79 1 159280000 62674 6267 41760 42698 73105;73106 73105 -0.010874450451183293 SYTRLFSNF 9 Unmodified _SYTRLFSNF_ 0 0 0 nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;ENST00000490112.1_1_3:33438535-33441732:-|nuORF nc|ENSG00000153560|Q9NZI7-4|UBP1 nc|ENSG00000153560|Q9NZI7-4|UBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7825317382812 2 567.782556 1133.55056 0.83232 0.00047258 -0.677 -0.00038439 0.15532 8.819E-05 567.7822306236642 76.155 2.292 69.98 68.568 70.86 -6.1757 264 124 3 0 0 0 0.00010239 9 49953 49344;49472;49596;49718;49842;49953;50083;50205;50317 152.89 102.95 1 39478000 62675 6267 41760 42698 73107;73108;73109;73110;73111;73112;73113;73114;73115 73112 -0.010874450451183293 SYTSGLETL 9 Unmodified _SYTSGLETL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7398681640625 2 485.740022 969.465492 0.5085 0.000247 0.26154 0.00012704 0.77004 0.00037404 485.73995407713585 53.292 0.4455 53.292 53.12 53.566 0 55 19 5 0 0 0 0.087258 2 29482 29482;29590 36.044 15.173 1 60361000 62676 1675 41761 42699 73116;73117 73116 -0.020462353015659573 SYTSGLETL 9 Unmodified _SYTSGLETL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.4725952148438 1 970.472768 969.465492 0.41036 0.00039824 0.81512 0.00079105 1.2255 0.0011893 970.4739106125032 53.306 0.48579 53.306 53.08 53.566 0 51 21 4 0 0 0 0.0090851 1 29573 29573 85.357 0 1 31060000 62677 1675 41761 42699 73118 73118 -0.020462353015659573 SYTSGLETL 9 Unmodified _SYTSGLETL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.4735107421875 1 970.472768 969.465492 0.83958 0.00081479 3.9036 0.0037883 4.7432 0.0046031 970.4771513337231 61.4 0.58878 55.252 55.015 55.604 -6.1478 43 29 2 0 0 0 0.0090851 2 39447 39447;39573 85.357 21.12 1 54208000 62678 1675 41761 42699 73119;73120 73119 -0.020462353015659573 SYTSGLETL 9 Unmodified _SYTSGLETL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7402648925781 2 485.740022 969.465492 1.1026 0.00053555 0.66705 0.00032401 1.7696 0.00085957 485.7405243436019 61.372 0.6865 55.224 54.978 55.665 -6.1478 64 34 3 0 0 0 0.016184 2 39576 39448;39576 67.344 18.998 1 88359000 62679 1675 41761 42699 73121;73122 73122 -0.020462353015659573 SYTSGPDL 8 Unmodified _SYTSGPDL_ 0 0 0 REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.3789672851562 1 839.37814 838.370863 0.24784 0.00020803 0.77146 0.00064755 1.0193 0.00085558 839.3781810719537 53.281 0.18676 53.281 53.166 53.353 0 10 7 2 0 0 0 0.19792 1 29519 29519 70.716 3.3717 1 1024200 + 62680 27226 41762 42700 73123 73123 -0.05478749052906551 SYTSGPGSRI 10 Unmodified _SYTSGPGSRI_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7561645507812 2 512.756538 1023.49852 -0.25034 -0.00012836 -0.14719 -7.5475E-05 -0.39754 -0.00020384 512.7564492329828 25.152 0.39312 25.152 24.972 25.366 0 84 28 4 0 0 0 0.052718 3 12900 12797;12884;12900 57.249 21.122 1 38755000 + 62681 165 41763 42701 73124;73125;73126 73126 -0.012286084588595259 SYTSGPGSRI 10 Unmodified _SYTSGPGSRI_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.757080078125 2 512.756538 1023.49852 0.54626 0.0002801 0.17891 9.1739E-05 0.72517 0.00037184 512.7567240293281 28.478 0.51344 25.33 25.041 25.555 -3.1482 75 26 4 0 0 0 0.047829 2 15908 15790;15908 59.368 23.241 1 61908000 + 62682 165 41763 42701 73127;73128 73128 -0.012286084588595259 SYTSGPGSRIS 11 Unmodified _SYTSGPGSRIS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2724609375 2 556.272552 1110.53055 -0.019709 -1.0964E-05 -0.22648 -0.00012598 -0.24619 -0.00013695 556.2724487433132 21.245 0.32584 21.245 21.095 21.421 0 145 51 5 0 0 0 0.17129 2 10764 10669;10764 34.222 7.9536 1 26460000 + 62683 165 41764 42702 73129;73130 73130 -0.020292407757096953 SYTSGPGSRIS 11 Unmodified _SYTSGPGSRIS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7735595703125 2 556.272552 1110.53055 -0.074294 -4.1328E-05 -0.98953 -0.00055045 -1.0638 -0.00059178 556.2724984903634 21.164 0.20862 21.193 21.074 21.283 0.028357 23 11 3 0 0 0 0.33612 1 10722 10722 24.882 4.4279 1 1858500 + 62684 165 41764 42702 73131 73131 -0.020292407757096953 SYTSGPGSRIS 11 Unmodified _SYTSGPGSRIS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.2723999023438 2 556.272552 1110.53055 NaN NaN NaN NaN NaN NaN NaN 21.19 1 21.203 20.703 21.703 0.012875 0 0 0 0.2377 1 10837 10837 37.075 4.289 1 + 62685 165 41764 42702 73132 73132 -0.020292407757096953 SYTSGPGSRIS 11 Unmodified _SYTSGPGSRIS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2717895507812 2 556.272552 1110.53055 0.36173 0.00020122 0.18216 0.00010133 0.54389 0.00030255 556.2726691333162 24.4 0.32821 21.573 21.486 21.814 -2.8273 27 18 2 0 0 0 0.11513 2 13276 13276;13391 40.725 4.2439 1 3238700 + 62686 165 41764 42702 73133;73134 73133 -0.020292407757096953 SYTSPAQYPA 10 Unmodified _SYTSPAQYPA_ 0 0 0 REV__ENST00000521688.5_1_8:110356192-110356372:+|nuORF REV__ENST00000521688.5_1_8:110356192-110356372:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3134155273438 2 542.750921 1083.48729 -0.47857 -0.00025974 0.87048 0.00047245 0.39191 0.00021271 542.7500372045417 55.982 0.1589 55.504 55.379 55.538 -0.47798 10 7 2 0 0 0 0.23227 1 30392 30392 6.7232 0 1 1266900 + 62687 28292 41765 42703 73135 73135 -0.051114305530063575 SYTSVKENF 9 Unmodified _SYTSVKENF_ 0 0 0 nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7588500976562 2 537.758746 1073.50294 -1.0408 -0.00055972 0.23342 0.00012552 -0.80742 -0.0004342 537.7587178111702 32.366 0.24067 32.366 32.204 32.444 0 35 12 4 0 0 0 0.0082981 1 16851 16851 107.19 69.213 1 52037000 62688 2903 41766 42704 73136 73136 -0.030871440359533153 SYTSVKENF 9 Unmodified _SYTSVKENF_ 0 0 0 nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B nc|ENSG00000112584|Q96EK7-2|FAM120B MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7584838867188 2 537.758746 1073.50294 0.78846 0.000424 -0.32267 -0.00017352 0.46579 0.00025048 537.7583188485295 36.847 0.43873 32.563 32.297 32.736 -4.2835 85 26 4 0 0 0 0.0060143 1 21502 21502 137.42 82.65 1 99566000 62689 2903 41766 42704 73137 73137 -0.030871440359533153 SYTSVLSRL 9 Unmodified _SYTSVLSRL_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2859497070312 2 513.284931 1024.55531 0.20369 0.00010455 0.47288 0.00024272 0.67657 0.00034727 513.285091819083 59.107 0.27652 58.616 58.474 58.75 -0.49079 32 12 3 0 0 0 0.011671 1 32132 32132 75.761 41.658 1 7809900 62690 6171 41767 42705 73138 73138 0.044014390976599316 SYTSVLSRL 9 Unmodified _SYTSVLSRL_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2857055664062 2 513.284931 1024.55531 0.76007 0.00039013 0.056622 2.9063E-05 0.81669 0.0004192 513.2850431831025 58.773 0.35474 58.712 58.526 58.88 -0.060719 40 17 3 0 0 0 0.011671 1 32056 32056 75.761 43.455 1 4834500 62691 6171 41767 42705 73139 73139 0.044014390976599316 SYTSVLSRL 9 Unmodified _SYTSVLSRL_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2855834960938 2 513.284931 1024.55531 1.327 0.00068113 -0.12192 -6.258E-05 1.2051 0.00061855 513.2850663933366 64.249 0.5091 58.074 57.822 58.331 -6.1757 44 26 2 0 0 0 0.013609 2 41656 41515;41656 70.332 39.695 1 18640000 62692 6171 41767 42705 73140;73141 73141 0.044014390976599316 SYTTTTTI 8 Unmodified _SYTTTTTI_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4354248046875 1 887.435654 886.428378 -0.58778 -0.00052162 0.24308 0.00021572 -0.3447 -0.0003059 887.435746831733 34.664 0.2968 34.664 34.496 34.793 0 31 14 3 0 0 0 0.5284 2 18338 18223;18338 32.117 22.77 1 4340700 62693 1685 41768 42706 73142;73143 73143 -0.019379068473313055 SYTTTTTI 8 Unmodified _SYTTTTTI_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 887.4371337890625 1 887.435654 886.428378 0.30713 0.00027256 1.0716 0.00095095 1.3787 0.0012235 887.4366970341538 40.748 0.38867 36.219 36.001 36.39 -4.5294 41 23 2 0 0 0 0.13832 2 24398 24269;24398 89.427 63.086 1 11640000 62694 1685 41768 42706 73144;73145 73145 -0.019379068473313055 SYTTTTTI 8 Unmodified _SYTTTTTI_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2213134765625 2 444.221465 886.428378 1.1296 0.00050178 -0.63843 -0.00028361 0.49114 0.00021817 444.2210343476736 40.683 0.38867 36.153 36.001 36.39 -4.5294 33 23 2 0 0 0 0.5284 1 24316 24316 32.117 12.678 1 10079000 62695 1685 41768 42706 73146 73146 -0.019379068473313055 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.5376281738281 3 361.537953 1081.59203 -0.49767 -0.00017993 -0.52542 -0.00018996 -1.0231 -0.00036989 361.5377301741017 56.039 0.27482 55.554 55.414 55.689 -0.48554 37 13 3 0 0 0 0.068777 2 30379 30379;30480 43.858 25.712 1 20770000 62696 1623 41769 42707 73147;73148 73147 0.054497357142281544 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3134155273438 2 541.803291 1081.59203 -0.67858 -0.00036766 -1.2002 -0.0006503 -1.8788 -0.001018 541.802549219596 56.02 0.25729 55.537 55.417 55.674 -0.48303 20 12 2 0 0 0 0.030883 1 30392 30392 60.39 46.484 1 10633000 62697 1623 41769 42707 73149 73149 0.054497357142281544 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5380554199219 3 361.537953 1081.59203 -0.31562 -0.00011411 0.30731 0.00011111 -0.0083025 -3.0017E-06 361.5381937251886 55.732 0.30541 55.663 55.477 55.782 -0.068737 36 15 4 0 0 0 0.068777 1 30248 30248 43.858 25.712 1 13852000 62698 1623 41769 42707 73150 73150 0.054497357142281544 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.8027954101562 2 541.803291 1081.59203 -0.24708 -0.00013387 1.5023 0.00081395 1.2552 0.00068008 541.8036060457038 55.745 0.17244 55.676 55.532 55.705 -0.068737 15 8 3 0 0 0 0.0086629 1 30282 30282 101.72 59.882 1 8172700 62699 1623 41769 42707 73151 73151 0.054497357142281544 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5385131835938 3 361.537953 1081.59203 1.389 0.00050219 -0.18862 -6.8192E-05 1.2004 0.000434 361.53785102030207 85.842 0.77038 79.666 79.153 79.924 -6.1757 92 44 3 0 0 0 0.068777 3 56352 56352;56486;56619 36.127 15.712 1 52282000 62700 1623 41769 42707 73152;73153;73154 73152 0.054497357142281544 SYTVHLHLL 9 Unmodified _SYTVHLHLL_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8023071289062 2 541.803291 1081.59203 0.52582 0.00028489 -0.82429 -0.0004466 -0.29847 -0.00016171 541.8029181146558 85.801 0.65414 79.625 79.196 79.85 -6.1757 62 37 2 0 0 0 0.0086179 2 56428 56428;56568 89.427 59.202 1 26062000 62701 1623 41769 42707 73155;73156 73155 0.054497357142281544 SYTVVFRDI 9 Unmodified _SYTVVFRDI_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.749755859375 2 550.292756 1098.57096 0.12559 6.9111E-05 0.85981 0.00047314 0.9854 0.00054226 550.2933438831267 60.187 0.11975 59.696 59.607 59.726 -0.49079 11 5 3 0 0 0 0.21473 1 32748 32748 4.3292 0 1 4128500 62702 5454 41770 42708 73157 73157 0.025617256147143053 SYTYIFFY 8 Unmodified _SYTYIFFY_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2584838867188 2 552.257851 1102.50115 0.58552 0.00032336 -0.26496 -0.00014632 0.32056 0.00017703 552.2575029563866 87.336 1.2102 86.831 86.19 87.4 -0.50423 73 51 2 0 0 0 0.80624 1 47605 47605 2.8892 0.31174 1 694900 + 62703 28135 41771 42709 73158 73158 -0.04600153053888789 SYTYLSLGF 9 Unmodified _SYTYLSLGF_ 0 0 0 ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL ENSG00000087086|ENST00000331825|FTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7614135742188 2 525.760758 1049.50696 1.3469 0.00070815 0.32016 0.00016833 1.6671 0.00087648 525.7609136849281 96.589 0.85983 90.414 90.069 90.929 -6.1757 86 50 2 0 0 0 0.010877 1 64080 64080 77.984 24.409 1 28412000 62704 1451 41772 42710 73159 73159 -0.015810545422255018 SYVAGLPRF 9 Unmodified _SYVAGLPRF_ 0 0 0 ENSG00000135686|ENST00000564996|KLHL36;ENST00000325279.4_1_16:84693236-84695736:+|nuORF ENSG00000135686|ENST00000564996|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2779846191406 2 505.276909 1008.53927 0.41321 0.00020878 -0.5725 -0.00028927 -0.15929 -8.0487E-05 505.27676686767717 60.296 0.28782 60.252 60.127 60.415 -0.043507 24 14 2 0 0 0 0.031062 1 32871 32871 54.774 16.622 1 10388000 62705 4731 41773 42711 73160 73160 0.03533777651421133 SYVAGLPRF 9 Unmodified _SYVAGLPRF_ 0 0 0 ENSG00000135686|ENST00000564996|KLHL36;ENST00000325279.4_1_16:84693236-84695736:+|nuORF ENSG00000135686|ENST00000564996|KLHL36 ENSG00000135686|ENST00000564996|KLHL36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2778625488281 2 505.276909 1008.53927 0.65945 0.0003332 1.7749 0.00089682 2.4343 0.00123 505.27829681834186 65.991 0.60141 59.815 59.461 60.063 -6.1757 48 35 2 0 0 0 0.07916 2 42807 42807;43038 37.974 19.185 1 16385000 62706 4731 41773 42711 73161;73162 73161 0.03533777651421133 SYVDKNLELF 10 Unmodified _SYVDKNLELF_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.317138671875 2 614.316428 1226.6183 0.2929 0.00017994 -0.65999 -0.00040544 -0.36708 -0.0002255 614.3161413192104 64.522 0.30649 64.522 64.365 64.672 0 39 15 3 0 0 0 0.28276 2 36035 35932;36035 28.495 12.259 1 7403300 62707 4881 41774 42712 73163;73164 73164 0.01405960095030423 SYVDKNLELF 10 Unmodified _SYVDKNLELF_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3189697265625 2 614.316428 1226.6183 0.4919 0.00030218 0.57478 0.0003531 1.0667 0.00065528 614.3168384629473 65.019 0.32385 64.535 64.36 64.684 -0.48428 34 14 3 0 0 0 0.23548 1 35433 35433 31.268 15.119 1 4100200 62708 4881 41774 42712 73165 73165 0.01405960095030423 SYVEELVEI 9 Unmodified _SYVEELVEI_ 0 0 0 ENST00000563805.1_1_16:90028494-90030760:+|nuORF;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 ENST00000563805.1_1_16:90028494-90030760:+|nuORF ENST00000563805.1_1_16:90028494-90030760:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7772827148438 2 540.776605 1079.53866 0.23379 0.00012643 -0.043705 -2.3635E-05 0.19008 0.00010279 540.776391685485 78.943 0.38026 78.943 78.762 79.142 0 39 17 3 0 0 0 0.16226 2 43827 43827;43928 26.884 9.9414 1 1869100 62709 5295 41775 42713 73166;73167 73166 0.0020689342104560637 SYVEELVEI 9 Unmodified _SYVEELVEI_ 0 0 0 ENST00000563805.1_1_16:90028494-90030760:+|nuORF;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8;nc|ENSG00000140995|Q6ZN54|DEF8 ENST00000563805.1_1_16:90028494-90030760:+|nuORF ENST00000563805.1_1_16:90028494-90030760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.77685546875 2 540.776605 1079.53866 NaN NaN NaN NaN NaN NaN NaN 89.226 1 83.051 82.551 83.551 -6.1757 0 0 0 0.10545 1 58892 58892 42.095 13.608 1 62710 5295 41775 42713 73168 73168 0.0020689342104560637 SYVEPFSGF 9 Unmodified _SYVEPFSGF_ 0 0 0 ENST00000539563.5_1_3:115528395-115528695:-|nuORF ENST00000539563.5_1_3:115528395-115528695:-|nuORF ENST00000539563.5_1_3:115528395-115528695:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7669067382812 2 516.737283 1031.46001 0.26315 0.00013598 2.9163 0.001507 3.1794 0.0016429 516.7381861641031 62.868 0.28164 62.868 62.704 62.985 0 20 11 2 0 0 0 0.20528 1 35072 35072 8.5933 0 1 735990 62711 15021 41776 42714 73169 73169 -0.054459140933886374 SYVESWLYG 9 Unmodified _SYVESWLYG_ 0 0 0 REV__nc|ENSG00000172009|P52888-2|THOP1 REV__nc|ENSG00000172009|P52888-2|THOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2578125 2 552.25584 1102.49713 0.42127 0.00023265 2.7577 0.001523 3.179 0.0017556 552.257432866647 80.897 0.58835 80.897 80.649 81.238 0 40 29 2 0 0 0 0.58466 1 45075 45075 2.3027 1.5091 1 555420 + 62712 22622 41777 42715 73170 73170 -0.050022425476072385 SYVETELIF 9 Unmodified _SYVETELIF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7803955078125 2 550.779148 1099.54374 0.8945 0.00049267 -0.02006 -1.1048E-05 0.87444 0.00048162 550.7787760185836 91.495 0.70148 85.319 84.911 85.612 -6.1757 56 39 2 0 0 0 0.016184 1 60516 60516 67.344 22.937 1 11719000 62713 5318;130 41778 42716 73171 73171 -0.002048027163482402 SYVFGCKRD 9 Unmodified _SYVFGCKRD_ 0 0 0 REV__ENST00000595550.1_1_19:49955008-49955137:-|nuORF REV__ENST00000595550.1_1_19:49955008-49955137:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7554931640625 2 537.755484 1073.49641 1.0315 0.00055469 0.29884 0.0001607 1.3303 0.00071539 537.7556019702979 95.256 0.90777 89.08 88.573 89.481 -6.1757 100 51 2 0 0 0 0.34999 1 63190 63190 14.838 2.3067 1 46408000 + 62714 29212 41779 42717 73172 73172 -0.037393604683074955 SYVGIATLI 9 Unmodified _SYVGIATLI_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5443725585938 1 936.54006 935.532783 0.41934 0.00039273 0.10868 0.00010179 0.52802 0.00049451 936.5407879584441 86.707 0.25491 86.203 86.115 86.37 -0.50318 14 9 2 0 0 0 0.14602 1 47441 47441 28.487 0 1 725380 62715 1444 41780 42718 73173 73173 0.06243839700039189 SYVGRVPAVF 10 Unmodified _SYVGRVPAVF_ 0 0 0 REV__ENSG00000139899|ENST00000267406|CBLN3 REV__ENSG00000139899|ENST00000267406|CBLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3045043945312 2 547.803291 1093.59203 0.10768 5.899E-05 -0.14201 -7.7795E-05 -0.034328 -1.8805E-05 547.8029257039586 83.555 0.18816 83.618 83.518 83.706 0.063171 11 6 2 0 0 0 0.24625 1 46239 46239 30.637 6.616 1 3745100 + 62716 20437 41781 42719 73174 73174 0.04897735714234841 SYVGSLYVW 9 Unmodified _SYVGSLYVW_ 0 0 0 ENSG00000173653|ENST00000309657|RCE1;RCE1|p.A46T|1|0.18|ENSG00000173653|chr11:66843591-66843591|G/A|missense_variant;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;ENST00000533277.5_1_11:66610899-66611226:+|nuORF ENSG00000173653|ENST00000309657|RCE1 ENSG00000173653|ENST00000309657|RCE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2685546875 2 537.26875 1072.52295 1.0035 0.00053914 -0.58825 -0.00031605 0.41523 0.00022309 537.2685570705456 91.972 0.88033 85.797 85.387 86.268 -6.1757 82 51 2 0 0 0 0.0083087 4 60886 60625;60754;60886;61006 97.075 61.336 1 24394000 62717 8351 41782 42720 73175;73176;73177;73178 73177 -0.010413483053525852 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2822265625 2 532.282192 1062.54983 -0.31902 -0.00016981 0.28737 0.00015296 -0.031655 -1.685E-05 532.2825625940735 34.322 0.3097 34.13 33.917 34.226 -0.19132 28 11 3 0 0 0 0.098164 1 17861 17861 33.445 22.621 1 3767200 62718 3677 41783 42721 73179 73179 0.021057603058579843 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 355.1905212402344 3 355.190553 1062.54983 -0.2894 -0.00010279 0.27046 9.6064E-05 -0.018946 -6.7296E-06 355.19055138445106 34.33 0.40704 34.138 33.843 34.25 -0.19131 36 15 3 0 0 0 0.2546 1 17916 17916 23.801 15.646 1 8278900 62719 3677 41783 42721 73180 73180 0.021057603058579843 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2826538085938 2 532.282192 1062.54983 NaN NaN NaN NaN NaN NaN NaN 34.426 1 34.235 33.735 34.735 -0.19131 0 0 0 0.71962 1 17982 17982 8.7454 1.4562 1 62720 3677 41783 42721 73181 73181 0.021057603058579843 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2816772460938 2 532.282192 1062.54983 0.15408 8.2014E-05 -0.50462 -0.0002686 -0.35054 -0.00018659 532.2818777460215 33.981 0.22153 34.01 33.881 34.103 0.028934 17 9 2 0 0 0 0.044296 1 17903 17903 47.594 25.848 1 1116700 62721 3677 41783 42721 73182 73182 0.021057603058579843 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.1903991699219 3 355.190553 1062.54983 0.038593 1.3708E-05 0.012259 4.3542E-06 0.050852 1.8062E-05 355.19046854355946 33.974 0.30755 34.003 33.837 34.145 0.028934 32 13 3 0 0 0 0.20507 1 17909 17909 17.049 12.52 1 3940800 62722 3677 41783 42721 73183 73183 0.021057603058579843 SYVHKVPSF 9 Unmodified _SYVHKVPSF_ 0 0 0 ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L ENSG00000123066|ENST00000281928|MED13L MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.1907958984375 3 355.190553 1062.54983 1.6548 0.00058776 -1.4708 -0.00052242 0.18394 6.5335E-05 355.19013237175864 38.142 0.5085 33.773 33.456 33.964 -4.3689 74 30 3 0 0 0 0.053952 2 22537 22412;22537 35.08 23.422 1 66722000 62723 3677 41783 42721 73184;73185 73185 0.021057603058579843 SYVHLGSGTSE 11 Unmodified _SYVHLGSGTSE_ 0 0 0 ENST00000607031.1_1_1:2318600-2318942:-|nuORF ENST00000607031.1_1_1:2318600-2318942:-|nuORF ENST00000607031.1_1_1:2318600-2318942:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7640991210938 2 568.76456 1135.51457 -0.12216 -6.9477E-05 -1.3351 -0.00075934 -1.4572 -0.00082882 568.7638348047396 24.383 0.18904 24.383 24.301 24.49 0 25 9 3 0 0 0 0.48742 1 12443 12443 16.149 4.5088 1 2552700 62724 15858 41784 42722 73186 73186 -0.047769470126240776 SYVHLGSGTSE 11 Unmodified _SYVHLGSGTSE_ 0 0 0 ENST00000607031.1_1_1:2318600-2318942:-|nuORF ENST00000607031.1_1_1:2318600-2318942:-|nuORF ENST00000607031.1_1_1:2318600-2318942:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7635498046875 2 568.76456 1135.51457 NaN NaN NaN NaN NaN NaN NaN 27.685 1 27.685 27.185 28.185 0 0 0 0 0.91362 1 14271 14271 8.1555 1.9497 1 62725 15858 41784 42722 73187 73187 -0.047769470126240776 SYVHYVFRL 9 Unmodified _SYVHYVFRL_ 0 0 0 nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5486755371094 3 395.213469 1182.61858 0.65551 0.00025907 0.93672 0.0003702 1.5922 0.00062927 395.2135047948955 57.705 0.31784 57.639 57.458 57.775 -0.066036 49 15 4 0 0 0 0.44883 2 31370 31370;31478 10.151 6.2742 1 10756000 62726 2473 41785 42723 73188;73189 73188 0.034574246055626645 SYVKGIYSF 9 Unmodified _SYVKGIYSF_ 0 0 0 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 ENSG00000075234|ENST00000381031|TTC38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2760009765625 2 532.276575 1062.5386 -0.21322 -0.00011349 0.522 0.00027785 0.30879 0.00016436 532.2771547146555 53.849 0.21631 53.782 53.704 53.921 -0.066936 17 10 2 0 0 0 0.091924 1 29221 29221 34.932 16.797 1 3491500 62727 1147 41786 42724 73190 73190 0.009829382117231944 SYVLHYSHM 9 Unmodified _SYVLHYSHM_ 0 0 0 REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7639770507812 2 568.763309 1135.51206 0.19613 0.00011155 -0.19999 -0.00011375 -0.0038605 -2.1957E-06 568.7635431436946 23.713 0.23883 23.726 23.594 23.833 0.012396 23 11 3 0 0 0 0.32235 1 12060 12060 11.64 3.7301 1 2915800 + 62728 27003 41787 42725 73191 73191 -0.05027073951282546 SYVLHYSHM 9 Unmodified _SYVLHYSHM_ 0 0 0 REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7639770507812 2 568.763309 1135.51206 0.61246 0.00034834 -0.48505 -0.00027588 0.12741 7.2463E-05 568.7631068668458 27.256 0.33429 24.219 24.04 24.375 -3.0365 42 16 3 0 0 0 0.34134 1 15039 15039 21.747 8.2388 1 44453000 + 62729 27003 41787 42725 73192 73192 -0.05027073951282546 SYVLHYSHM 9 Unmodified _SYVLHYSHM_ 0 0 0 REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.762451171875 2 568.763309 1135.51206 0.55464 0.00031546 -0.24759 -0.00014082 0.30705 0.00017464 568.7631200857584 27.709 0.44693 24.673 24.416 24.863 -3.0365 44 22 3 0 0 0 0.2324 1 15333 15333 28.487 11.545 1 35226000 + 62730 27003 41787 42725 73193 73193 -0.05027073951282546 SYVLHYSHM 9 Unmodified _SYVLHYSHM_ 0 0 0 REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.3275146484375 2 568.763309 1135.51206 0.55464 0.00031546 -0.24759 -0.00014082 0.30705 0.00017464 568.7631200857584 27.709 0.44693 24.673 24.416 24.863 -3.0365 44 22 3 0 0 0 0.16524 1 15475 15475 15.847 2.3393 1 35226000 + 62731 27003 41787 42725 73194 73194 -0.05027073951282546 SYVLHYSHM 9 Unmodified _SYVLHYSHM_ 0 0 0 REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF REV__ENST00000433866.6_1_16:83845132-83845162:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.763309 1135.51206 0.19613 0.00011155 -0.19999 -0.00011375 -0.0038605 -2.1957E-06 568.7635431436946 23.713 0.23883 23.726 23.594 23.833 0.012396 -0.061489 1.1329E-05 NaN 11.64 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2915800 + 62732 27003 41787 42725 -0.05027073951282546 SYVLKTVLL 9 Unmodified _SYVLKTVLL_ 0 0 0 ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2 ENST00000566735.1_1_16:19125342-19127388:+|nuORF ENST00000566735.1_1_16:19125342-19127388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.3272705078125 2 518.326068 1034.63758 0.58982 0.00030572 1.3669 0.00070851 1.9567 0.0010142 518.3266972036321 69.084 0.3633 69.115 68.886 69.249 0.030914 42 17 3 0 0 0 0.021948 1 37936 37936 61.602 21.652 1 6560600 62733 10378 41788 42726 73195 73195 0.12164961176608813 SYVNTTEEKF 10 Unmodified _SYVNTTEEKF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.2892456054688 2 609.287868 1216.56118 0.30849 0.00018796 1.0078 0.00061405 1.3163 0.00080201 609.2882819137284 55.114 0.59892 54.636 54.328 54.926 -0.47798 66 28 3 0 0 0 0.69064 1 30008 30008 3.9444 0.3479 1 1609600 62734 8028 41789 42727 73196 73196 -0.03843507181363748 SYVPELQQL 9 Unmodified _SYVPELQQL_ 0 0 0 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2823486328125 2 538.784764 1075.55498 0.41424 0.00022318 -0.8428 -0.00045409 -0.42857 -0.00023091 538.7848222866546 67.724 0.21223 67.724 67.639 67.851 0 15 9 2 0 0 0 0.5029 1 37765 37765 7.2892 0.56607 1 722560 62735 1950 41790 42728 73197 73197 0.020220193778186513 SYVQLVWSY 9 Unmodified _SYVQLVWSY_ 0 0 0 REV__ENST00000394223.1_1_4:140218545-140223589:-|nuORF REV__ENST00000394223.1_1_4:140218545-140223589:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7872314453125 2 572.787307 1143.56006 0.7409 0.00042438 0.85182 0.00048791 1.5927 0.00091229 572.7877068980946 64.561 0.34875 64.551 64.338 64.686 -0.010529 31 17 2 0 0 0 0.1773 1 35335 35335 25.399 4.9457 1 5149100 + 62736 26438 41791 42729 73198 73198 -0.005976767595711863 SYVQSPDTDPF 11 Unmodified _SYVQSPDTDPF_ 0 0 0 REV__ENSG00000070047|ENST00000264555|PHRF1 REV__ENSG00000070047|ENST00000264555|PHRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.1882019042969 3 419.187426 1254.54045 NaN NaN NaN NaN NaN NaN NaN 31.688 1 31.559 31.059 32.059 -0.12915 0 0 0 0.93933 1 16483 16483 2.6312 0 1 + 62737 17462 41792 42730 73199 73199 -0.07664097560996197 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2990112304688 2 543.297507 1084.58046 0.2141 0.00011632 0.82892 0.00045035 1.043 0.00056667 543.2979404008795 81.076 0.32727 81.076 80.911 81.238 0 31 15 3 0 0 0 0.48152 1 44983 44983 8.5933 1.304 1 747280 62738 10258 41793 42731 73200 73200 0.04155493900248075 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2982177734375 2 543.297507 1084.58046 0.51621 0.00028045 1.0848 0.00058934 1.601 0.0008698 543.2979552297128 81.596 0.53484 81.101 80.857 81.392 -0.4952 61 21 4 0 0 0 0.05447 2 44709 44611;44709 43.858 24.11 1 11252000 62739 10258 41793 42731 73201;73202 73202 0.04155493900248075 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1085.58935546875 1 1085.58774 1084.58046 0.59986 0.0006512 0.31509 0.00034205 0.91495 0.00099325 1085.5883640718205 81.57 0.28594 81.075 80.95 81.236 -0.4952 15 11 2 0 0 0 0.28023 1 44662 44662 18.146 4.2403 1 508240 62740 10258 41793 42731 73203 73203 0.04155493900248075 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.297607421875 2 543.297507 1084.58046 0.88284 0.00047964 0.31372 0.00017044 1.1966 0.00065009 543.2974608374698 81.013 0.39809 81.073 80.839 81.237 0.059929 35 15 3 0 0 0 0.05447 2 44748 44748;44860 43.858 28.011 1 6724600 62741 10258 41793 42731 73204;73205 73204 0.04155493900248075 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1085.596069335938 1 1085.58774 1084.58046 0.89265 0.00096905 1.7107 0.0018571 2.6034 0.0028262 1085.5890651323602 89.932 0.68044 83.757 83.376 84.057 -6.1757 66 37 2 0 0 0 0.018301 1 59177 59177 65.235 27.261 1 19876000 62742 10258 41793 42731 73206 73206 0.04155493900248075 SYVQTLVYI 9 Unmodified _SYVQTLVYI_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.298095703125 2 543.297507 1084.58046 0.92658 0.00050341 0.38593 0.00020967 1.3125 0.00071308 543.2977049456242 89.888 0.9474 83.712 83.239 84.186 -6.1757 190 53 5 0 0 0 0.070838 3 59275 59275;59394;59520 39.957 20.28 1 145190000 62743 10258 41793 42731 73207;73208;73209 73207 0.04155493900248075 SYVQVTSNF 9 Unmodified _SYVQVTSNF_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.754150390625 2 522.753464 1043.49238 0.09455 4.9426E-05 0.081616 4.2665E-05 0.17617 9.2091E-05 522.7537596615823 52.088 0.44584 52.088 51.93 52.376 0 43 19 3 0 0 0 0.031062 2 28783 28783;28890 54.774 31.625 1 24660000 62744 1080 41794 42732 73210;73211 73210 -0.027631266903881624 SYVQVTSNF 9 Unmodified _SYVQVTSNF_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.753662109375 2 522.753464 1043.49238 0.31552 0.00016494 -0.10246 -5.3559E-05 0.21306 0.00011138 522.753329252775 52.732 0.35593 52.28 52.159 52.515 -0.45173 34 17 3 0 0 0 0.07916 1 28520 28520 37.974 14.826 1 5804100 62745 1080 41794 42732 73212 73212 -0.027631266903881624 SYVQVTSNF 9 Unmodified _SYVQVTSNF_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.755126953125 2 522.753464 1043.49238 1.0389 0.00054307 3.3673 0.0017603 4.4062 0.0023033 522.7552440793161 60.228 0.64338 54.114 53.834 54.478 -6.1147 76 33 3 0 0 0 0.0088174 2 38613 38613;38742 103.75 65.774 1 139990000 62746 1080 41794 42732 73213;73214 73213 -0.027631266903881624 SYVRMGSFP 9 Unmodified _SYVRMGSFP_ 0 0 0 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2552490234375 2 522.252577 1042.4906 4.2414 0.0022151 -0.25414 -0.00013273 3.9873 0.0020824 522.2522907273469 99.045 0.24574 99.016 98.891 99.137 -0.028282 14 8 2 0 0 0 0.32235 1 55009 55009 16.149 2.2431 1 18942000 62747 134 41795 42733 73215 73215 -0.02894458979949377 SYVRSLPFF 9 Unmodified _SYVRSLPFF_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.298583984375 2 558.297842 1114.58113 0.45408 0.00025351 0.91764 0.00051232 1.3717 0.00076583 558.298358544789 76.709 0.58499 76.759 76.4 76.985 0.05011 76 24 4 0 0 0 0.021948 2 42390 42281;42390 61.602 41.148 1 50378000 62748 7943 41796 42734 73216;73217 73217 0.028423333399587136 SYVRSLPFF 9 Unmodified _SYVRSLPFF_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2987060546875 2 558.297842 1114.58113 1.3285 0.0007417 0.16692 9.3192E-05 1.4954 0.0008349 558.2979270908193 96.066 0.45393 89.89 89.63 90.084 -6.1757 94 27 5 0 0 0 0.033587 1 63658 63658 53.404 32.95 1 320460000 62749 7943 41796 42734 73218 73218 0.028423333399587136 SYVSVQTSTPP 11 Unmodified _SYVSVQTSTPP_ 0 0 0 REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2093200683594 3 389.196033 1164.56627 NaN NaN NaN NaN NaN NaN NaN 81.946 1 75.77 75.27 76.27 -6.1757 0 0 0 0.90364 1 53810 53810 5.8681 2.5124 1 + 62750 29318 41797 42735 73219 73219 -0.009432033187067645 SYVSVSSIYI 10 Unmodified _SYVSVSSIYI_ 0 0 0 REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|138|3|anti-sense REV__L1MC5_dup2220|chr2:240617463-240619377:-|1.5604863498242647|0.4393122126493036|1.83|178.0|138|3|anti-sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 559.2518310546875 2 559.292422 1116.57029 0.81731 0.00045712 0.69848 0.00039066 1.5158 0.00084777 559.2929908374924 35.407 0.58051 31.286 31.032 31.613 -4.1211 47 35 2 0 0 0 0.22728 1 20691 20691 10.074 3.8681 1 9832300 + 62751 29408 41798 42736 73220 73220 0.016668861750076758 SYVTSPQGFQF 11 Unmodified _SYVTSPQGFQF_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.301025390625 2 630.798403 1259.58225 -0.3953 -0.00024936 1.5186 0.0009579 1.1232 0.00070854 630.7991995582144 69.724 0.23113 69.245 69.109 69.34 -0.47903 22 9 3 0 0 0 0.68427 1 38109 38109 5.7319 1.7875 1 1145500 62752 5448 41799 42737 73221 73221 -0.037154970818164657 SYVTVGEF 8 Unmodified _SYVTVGEF_ 0 0 0 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2185974121094 2 451.218726 900.422899 NaN NaN NaN NaN NaN NaN NaN 58.426 1 58.426 57.926 58.926 0 0 0 0 0.95201 1 32531 32531 10.183 0 1 62753 470 41800 42738 73222 73222 -0.03129585639135257 SYVVAMETF 9 Unmodified _SYVVAMETF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7456665039062 2 523.746793 1045.47903 NaN NaN NaN NaN NaN NaN NaN 69.992 1 69.992 69.492 70.492 0 0 0 0 0.39043 1 38996 38996 20.454 8.8133 1 62754 7694 41801 42739 73223 73223 -0.04188700793974931 SYVVAMETF 9 Oxidation (M) _SYVVAM(Oxidation (M))ETF_ SYVVAM(1)ETF SYVVAM(46)ETF 0 0 1 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7465209960938 2 531.74425 1061.47395 1.1142 0.00059248 1.4537 0.00077301 2.5679 0.0013655 531.7449742121044 60.918 0.46378 54.771 54.495 54.959 -6.1478 44 24 2 0 0 0 0.047196 2 39154 39154;39295 46.021 27.886 1 38380000 62755 7694 41801 42740 73224;73225 73224 1314 -0.05433004656606499 SYVWRTYHL 9 Unmodified _SYVWRTYHL_ 0 0 0 ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000397876.6_1_16:106379-107140:+|nuORF ENST00000397876.6_1_16:106379-107140:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8767700195312 3 408.876857 1223.60874 0.816 0.00033364 0.17959 7.3432E-05 0.99559 0.00040707 408.876975238089 49.785 0.29668 49.736 49.589 49.886 -0.048824 47 14 5 0 0 0 0.07087 2 26880 26880;26981 30.703 23.094 1 29461000 62756 6824 41802 42741 73226;73227 73226 0.005882366001969785 SYVWRTYHL 9 Unmodified _SYVWRTYHL_ 0 0 0 ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000397876.6_1_16:106379-107140:+|nuORF ENST00000397876.6_1_16:106379-107140:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3226928710938 2 612.811648 1223.60874 1.2918 0.00079162 3.931 0.002409 5.2228 0.0032006 612.8117315101024 49.745 0.33745 49.697 49.549 49.886 -0.048824 43 16 4 0 0 0 0.037253 1 26883 26883 51.415 25.147 1 7161800 62757 6824 41802 42741 73228 73228 0.005882366001969785 SYVWRTYHL 9 Unmodified _SYVWRTYHL_ 0 0 0 ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000397876.6_1_16:106379-107140:+|nuORF ENST00000397876.6_1_16:106379-107140:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.8772583007812 3 408.876857 1223.60874 0.90357 0.00036945 0.11006 4.5003E-05 1.0136 0.00041445 408.87677173024156 54.765 0.29891 48.899 48.713 49.012 -5.8653 34 17 3 0 0 0 0.05447 1 34718 34718 40.239 21.518 1 16140000 62758 6824 41802 42741 73229 73229 0.005882366001969785 SYVWRTYHL 9 Unmodified _SYVWRTYHL_ 0 0 0 ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000397876.6_1_16:106379-107140:+|nuORF ENST00000397876.6_1_16:106379-107140:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2134399414062 3 408.876857 1223.60874 1.1055 0.00045201 0.88429 0.00036156 1.9898 0.00081358 408.87689206966314 68.789 0.49071 62.614 62.365 62.855 -6.1757 35 26 2 0 0 0 0.14 1 44913 44913 21.59 10.072 1 14954000 62759 6824 41802 42741 73230 73230 0.005882366001969785 SYVWRTYHL 9 Unmodified _SYVWRTYHL_ 0 0 0 ENST00000397876.6_1_16:106379-107140:+|nuORF;ENST00000481947.1_1_16:106326-107140:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25 ENST00000397876.6_1_16:106379-107140:+|nuORF ENST00000397876.6_1_16:106379-107140:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.8767700195312 3 408.876857 1223.60874 NaN NaN NaN NaN NaN NaN NaN 68.483 1 62.307 61.807 62.807 -6.1757 0 0 0 0.18351 1 44698 44698 24.882 10.663 1 62760 6824 41802 42741 73231 73231 0.005882366001969785 SYWDIQVFY 9 Unmodified _SYWDIQVFY_ 0 0 0 nc|ENSG00000181652|Q674R7-3|ATG9B;ENSG00000181652|ENST00000639579|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B nc|ENSG00000181652|Q674R7-3|ATG9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7852783203125 2 610.784764 1219.55498 0.148 9.0398E-05 0.022705 1.3868E-05 0.17071 0.00010427 610.784684712652 88.974 0.23613 88.974 88.84 89.076 0 27 15 3 0 0 0 0.58466 1 49201 49201 2.3027 0 1 781750 62761 8985 41803 42742 73232 73232 -0.046019806221693216 SYWDKKWSYC 10 Unmodified _SYWDKKWSYC_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.29833984375 2 683.300255 1364.58596 NaN NaN NaN NaN NaN NaN NaN 77.914 1 77.914 77.414 78.414 0 0 0 0 1.0019 1 43310 43310 0.45834 0 1 + 62762 17402 41804 42743 73233 73233 -0.08175150579586443 SYWHGGYDY 9 Unmodified _SYWHGGYDY_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-4|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.4881896972656 3 383.154168 1146.44067 0.18756 7.1866E-05 -1.1707 -0.00044857 -0.98318 -0.00037671 383.15373974287604 61.712 0.25085 61.224 61.074 61.325 -0.48764 19 11 2 0 0 0 0.60485 1 33629 33629 1.0715 0.29493 1 1358900 62763 759 41805 42744 73234 73234 -0.12668870384277398 SYWHGGYDY 9 Unmodified _SYWHGGYDY_ 0 0 0 nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT;nc|ENSG00000054392|Q5VTY9-4|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT nc|ENSG00000054392|Q5VTY9-6|HHAT MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 383.154168 1146.44067 0.18756 7.1866E-05 -1.1707 -0.00044857 -0.98318 -0.00037671 383.15373974287604 61.712 0.25085 61.224 61.074 61.325 -0.48764 0 0 NaN 1.0715 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1358900 62764 759 41805 42744 -0.12668870384277398 SYWRETRARYR 11 Unmodified _SYWRETRARYR_ 0 0 0 REV__ENST00000398689.2_1_10:76415522-76415648:+|nuORF REV__ENST00000398689.2_1_10:76415522-76415648:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.266845703125 3 515.267407 1542.78039 1.1358 0.00058523 1.8392 0.00094769 2.975 0.0015329 515.2664063264975 89.169 0.61853 82.994 82.636 83.255 -6.1757 98 34 4 0 0 0 0.73114 1 58834 58834 1.3296 0 1 32247000 + 62765 26568 41806 42745 73235 73235 0.030713616205275684 SYWTHIEY 8 Unmodified _SYWTHIEY_ 0 0 0 REV__ENSG00000083168|ENST00000265713|KAT6A REV__ENSG00000083168|ENST00000265713|KAT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7507934570312 2 549.748182 1097.48181 0.66019 0.00036294 1.0334 0.0005681 1.6936 0.00093104 549.7488737190017 59.891 1.05 59.891 59.693 60.743 0 120 47 5 0 0 0 0.78849 1 33790 33790 9.3474 0.75416 1 690030000 + 62766 17714 41807 42746 73236 73236 -0.06303109344821678 SYWVCTFSL 9 Unmodified _SYWVCTFSL_ 0 0 0 REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF REV__ENST00000488129.1_1_3:113676552-113677474:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1723937988281 3 369.172282 1104.49502 1.6233 0.00059929 -1.436 -0.00053013 0.18734 6.9162E-05 369.1718282472972 33.434 0.50121 29.449 29.264 29.765 -3.9853 70 28 3 0 0 0 0.58466 1 19230 19230 1.1933 0 1 43093000 + 62767 23411 41808 42747 73237 73237 -0.053049945570819546 SYYCHSAIQP 10 Unmodified _SYYCHSAIQP_ 0 0 0 REV__ENST00000464591.1_1_1:112018506-112019490:+|nuORF REV__ENST00000464591.1_1_1:112018506-112019490:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2274780273438 3 390.174574 1167.50189 -0.43596 -0.0001701 2.0325 0.00079305 1.5966 0.00062294 390.1752310027824 24.67 0.19966 24.67 24.624 24.823 0 18 11 2 0 0 0 0.23986 1 12667 12667 0.69767 0.07084 1 570040 + 62768 27378 41809 42748 73238 73238 -0.07515681676522945 SYYEKHPL 8 Unmodified _SYYEKHPL_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000465571.2_1_20:39794900-39795514:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2166748046875 2 518.758549 1035.50255 0.26592 0.00013795 -0.58 -0.00030088 -0.31407 -0.00016293 518.7586307470939 64.882 0.2412 64.882 64.694 64.936 0 18 10 2 0 0 0 8.7369 1 36123 36123 9.3474 1.4373 1 1338900 62769 3756 41810 42749 73239 73239 -0.013785189651571272 SYYEKLHTYF 10 Unmodified _SYYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.8839111328125 3 450.883677 1349.6292 0.76397 0.00034446 -0.49256 -0.00022209 0.27141 0.00012237 450.883530868381 50.306 0.19928 49.913 49.772 49.971 -0.3923 19 9 3 0 0 0 0.69126 1 27068 27068 3.8763 2.9508 1 2772500 62770 4412 41811 42750 73240 73240 -0.031626375306814225 SYYEKLHTYF 10 Unmodified _SYYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 450.883677 1349.6292 1.6898 0.00076191 -1.0819 -0.0004878 0.60793 0.00027411 450.8833406823508 49.985 0.16112 49.936 49.865 50.027 -0.048824 0.011515 -0.00063783 NaN 3.8763 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1247000 62771 4412 41811 42750 -0.031626375306814225 SYYFYISL 8 Unmodified _SYYFYISL_ 0 0 0 REV__ENSG00000184584|ENST00000330794|STING1 REV__ENSG00000184584|ENST00000330794|STING1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2578125 2 528.257851 1054.50115 NaN NaN NaN NaN NaN NaN NaN 57.268 1 57.268 56.768 57.768 0 0 0 0 0.85111 1 31866 31866 20.871 1.4322 1 + 62772 23428 41812 42751 73241 73241 -0.023921530539155356 SYYGPLNLLTF 11 Unmodified _SYYGPLNLLTF_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3363037109375 2 644.334621 1286.65469 -0.087794 -5.6568E-05 0.91146 0.00058729 0.82367 0.00053072 644.3350397805681 101.09 0.11216 101.05 100.98 101.09 -0.04216 11 3 4 0 0 0 0.019459 1 56164 56164 57.722 30.093 1 18790000 62773 5547 41813 42752 73242 73242 0.022828369917533564 SYYGPLNLLTF 11 Unmodified _SYYGPLNLLTF_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3341064453125 2 644.334621 1286.65469 0.6282 0.00040477 0.96413 0.00062122 1.5923 0.001026 644.3348447633635 101.61 0.13165 95.435 95.351 95.483 -6.1757 21 6 4 0 0 0 0.00013798 1 68178 68178 92.653 52.704 1 107110000 62774 5547 41813 42752 73243 73243 0.022828369917533564 SYYGPLNWITF 11 Unmodified _SYYGPLNWITF_ 0 0 0 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.8338012695312 2 680.832246 1359.64994 -0.21382 -0.00014557 1.7432 0.0011869 1.5294 0.0010413 680.8332915458818 101.17 0.10116 101.12 101.06 101.16 -0.04216 9 3 3 0 0 0 0.63851 1 56219 56219 9.3831 3.1773 1 10701000 62775 7751 41814 42753 73244 73244 -0.015500471510222269 SYYGPLNWITF 11 Unmodified _SYYGPLNWITF_ 0 0 0 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.8334350585938 2 680.832246 1359.64994 1.0313 0.00070211 1.1321 0.0007708 2.1634 0.0014729 680.8328747915252 101.65 0.15222 95.472 95.351 95.503 -6.1757 19 7 4 0 0 0 0.073964 1 68208 68208 45.7 28.587 1 76049000 62776 7751 41814 42753 73245 73245 -0.015500471510222269 SYYHTWVF 8 Unmodified _SYYHTWVF_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7532958984375 2 551.753267 1101.49198 0.34916 0.00019265 -3.4193 -0.0018866 -3.0702 -0.001694 551.7524107852691 65.245 0.087044 64.76 64.727 64.814 -0.48428 5 3 2 0 0 0 0.78849 1 35586 35586 9.3474 4.5914 1 873450 + 62777 18554 41815 42754 73246 73246 -0.05470501619561219 SYYHTWVF 8 Unmodified _SYYHTWVF_ 0 0 0 REV__ENSG00000107165|ENST00000388918|TYRP1 REV__ENSG00000107165|ENST00000388918|TYRP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.753267 1101.49198 0.34916 0.00019265 -3.4193 -0.0018866 -3.0702 -0.001694 551.7524107852691 65.245 0.087044 64.76 64.727 64.814 -0.48428 0 0 NaN 9.3474 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 873450 + 62778 18554 41815 42754 -0.05470501619561219 SYYKQVDPAY 10 Unmodified _SYYKQVDPAY_ 0 0 0 ENST00000595845.1_1_19:16552687-16582756:-|nuORF;ENST00000597559.5_1_19:16547732-16582756:-|nuORF;nc|ENSG00000127527|Q9UBC2-4|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1 ENST00000595845.1_1_19:16552687-16582756:-|nuORF ENST00000595845.1_1_19:16552687-16582756:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.2918701171875 2 617.292953 1232.57135 0.19875 0.00012269 -0.65116 -0.00040196 -0.45241 -0.00027927 617.2927439598337 54.763 0.23794 54.296 54.182 54.42 -0.46664 25 11 3 0 0 0 0.41822 1 29668 29668 30.637 9.0996 1 8372700 62779 4016 41816 42755 73247 73247 -0.03562899456096602 SYYNYCNLF 9 Carbamidomethyl (C) _SYYNYC(Carbamidomethyl (C))NLF_ SYYNYC(1)NLF SYYNYC(61)NLF 0 1 0 ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.259033203125 2 622.258056 1242.50156 0.8589 0.00053445 -0.35098 -0.0002184 0.50791 0.00031605 622.2578908322938 81.284 0.45055 75.108 74.892 75.343 -6.1757 44 25 2 0 0 0 0.022193 2 53400 53270;53400 61.357 52.764 1 27122000 62780 1759 41817 42756 73248;73249 73249 167 -0.10999101396396327 SYYPTSSSTSF 11 Unmodified _SYYPTSSSTSF_ 0 0 0 ENSG00000102119|ENST00000369842|EMD;ENST00000471965.1_1_X:153609106-153609554:+|nuORF ENSG00000102119|ENST00000369842|EMD ENSG00000102119|ENST00000369842|EMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7652587890625 2 613.764226 1225.5139 0.8159 0.00050077 -1.0594 -0.00065019 -0.24345 -0.00014942 613.7639972873848 46.397 0.18713 46.397 46.294 46.481 0 12 8 2 0 0 0 0.65108 1 25384 25384 8.7454 4.801 1 1306900 62781 2018 41818 42757 73250 73250 -0.08983786452336062 SYYVTVIQM 9 Unmodified _SYYVTVIQM_ 0 0 0 nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF nc|ENSG00000054654|Q8WXH0-7|SYNE2 nc|ENSG00000054654|Q8WXH0-7|SYNE2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.814453125 2 552.275718 1102.53688 1.1848 0.00065433 -2.0532 -0.001134 -0.86846 -0.00047963 552.7756920906211 89.254 0.65519 83.079 82.763 83.418 -6.1757 54 36 2 0 0 0 0.16785 1 58717 58717 23.148 10.617 1 15472000 62782 12747 41819 42758 73251 73251 -0.01028438868570447 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 832.4569091796875 1 832.45633 831.449054 -0.0057837 -4.8147E-06 1.1237 0.00093543 1.1179 0.00093061 832.4570971783662 63.798 0.4557 63.798 63.567 64.022 0 50 18 4 0 0 0 0.0094915 2 35604 35503;35604 81.864 37.457 1 15064000 62783 6218;14777 41820 42759 73252;73253 73253 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.7322998046875 2 416.731803 831.449054 -0.0037935 -1.5809E-06 1.1346 0.00047284 1.1308 0.00047126 416.7321314340659 63.815 0.40749 63.815 63.567 63.974 0 41 16 3 0 0 0 0.0094915 2 35535 35535;35639 81.864 45.82 1 3875000 62784 6218;14777 41820 42759 73254;73255 73254 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 832.4573364257812 1 832.45633 831.449054 0.20208 0.00016822 1.1382 0.00094748 1.3402 0.0011157 832.4571872158366 64.273 0.48204 63.788 63.532 64.014 -0.48512 68 22 4 0 0 0 0.0086179 3 35080 34977;35080;35185 89.427 45.02 1 27089000 62785 6218;14777 41820 42759 73256;73257;73258 73257 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.7323608398438 2 416.731803 831.449054 0.67163 0.00027989 0.55343 0.00023063 1.2251 0.00051052 416.73195051885483 64.234 0.3774 63.748 63.572 63.949 -0.48512 46 17 3 0 0 0 0.013472 2 34991 34991;35093 70.716 34.671 1 8009800 62786 6218;14777 41820 42759 73259;73260 73259 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 832.4580078125 1 832.45633 831.449054 1.1612 0.00096661 0.58798 0.00048947 1.7491 0.0014561 832.4568788381207 63.871 0.21929 63.861 63.719 63.938 -0.010532 15 10 2 0 0 0 0.023164 1 34922 34922 60.39 15.983 1 1104600 62787 6218;14777 41820 42759 73261 73261 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 832.4566650390625 1 832.45633 831.449054 1.0781 0.00089751 1.8602 0.0015485 2.9383 0.002446 832.4561859248839 70.729 0.56244 64.553 64.244 64.806 -6.1757 86 29 4 0 0 0 0.0086629 3 46223 46101;46223;46336 101.72 48.146 1 140630000 62788 6218;14777 41820 42759 73262;73263;73264 73263 0.026587283229901004 TAAAALPAF 9 Unmodified _TAAAALPAF_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000368202.4_1_6:128840173-128841710:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.7330322265625 2 416.731803 831.449054 1.2984 0.00054108 -0.14337 -5.9745E-05 1.155 0.00048133 416.7317580715259 70.721 0.48872 64.545 64.281 64.77 -6.1757 56 25 3 0 0 0 0.0086179 2 46121 46121;46243 89.427 47.332 1 69689000 62789 6218;14777 41820 42759 73265;73266 73265 0.026587283229901004 TAAAATLSL 9 Unmodified _TAAAATLSL_ 0 0 0 nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4615478515625 1 818.46181 817.454533 -0.0068359 -5.595E-06 0.55583 0.00045492 0.54899 0.00044933 818.4621810764112 52.59 0.32923 52.59 52.443 52.773 0 30 14 3 0 0 0 0.0090851 2 29094 29094;29198 85.357 18.013 1 6266500 62790 6982 41821 42760 73267;73268 73267 0.03850407114805421 TAAAATLSL 9 Unmodified _TAAAATLSL_ 0 0 0 nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.7346801757812 2 409.734543 817.454533 0.0097686 4.0025E-06 0.70904 0.00029052 0.71881 0.00029452 409.73445553242436 52.633 0.26145 52.633 52.467 52.728 0 16 11 2 0 0 0 0.038285 1 29167 29167 50.855 14.811 1 1534600 62791 6982 41821 42760 73269 73269 0.03850407114805421 TAAAATLSL 9 Unmodified _TAAAATLSL_ 0 0 0 nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000163349|Q86Z02-4|HIPK1;nc|ENSG00000163349|Q86Z02-3|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 nc|ENSG00000163349|Q86Z02-2|HIPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 818.4629516601562 1 818.46181 817.454533 1.1578 0.00094763 -0.50392 -0.00041244 0.65389 0.00053518 818.4615482213965 60.126 0.40364 54.011 53.852 54.256 -6.1147 28 20 2 0 0 0 0.0082281 3 38632 38632;38771;38784 92.822 18.399 1 20249000 62792 6982 41821 42760 73270;73271;73272 73270 0.03850407114805421 TAAAAVRQM 9 Unmodified _TAAAAVRQM_ 0 0 0 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7453918457031 2 459.744919 917.475285 0.24383 0.0001121 0.36675 0.00016861 0.61058 0.00028071 459.74508852094226 23.941 0.33692 21.114 20.948 21.284 -2.8273 43 19 4 0 0 0 0.0082353 2 13054 12943;13054 96.111 50.09 1 11061000 62793 4284 41822 42761 73273;73274 73274 0.01324674222826161 TAAAAVRQM 9 Oxidation (M) _TAAAAVRQM(Oxidation (M))_ TAAAAVRQM(1) TAAAAVRQM(44) 0 0 1 nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1 nc|ENSG00000130985|P22314-2|UBA1 nc|ENSG00000130985|P22314-2|UBA1 MSMS AL20221201_MKP_PDAC_01 4 467.7432556152344 2 467.742376 933.4702 NaN NaN NaN NaN NaN NaN NaN 14.818 1 12.291 11.791 12.791 -2.5273 0 0 0 0.098163 1 7552 7552 43.858 13.222 1 62794 4284 41822 42762 73275 73275 764 0.0008037036020596133 TAAAEINTY 9 Unmodified _TAAAEINTY_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2325744628906 2 477.232364 952.450176 -0.36099 -0.00017228 0.38776 0.00018505 0.026769 1.2775E-05 477.23232929215243 33.736 0.2717 33.736 33.617 33.888 0 33 13 3 0 0 0 0.042911 1 17690 17690 48.346 19.859 1 12400000 62795 7155 41823 42763 73276 73276 -0.02795102098764346 TAAAEINTY 9 Unmodified _TAAAEINTY_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 953.4573974609375 1 953.457453 952.450176 -0.83389 -0.00079507 0.33429 0.00031873 -0.49959 -0.00047634 953.4579098958955 33.758 0.2717 33.758 33.617 33.888 0 31 13 3 0 0 0 2.1227E-07 2 17697 17697;17804 166.45 70.163 1 10161000 62796 7155 41823 42763 73277;73278 73277 -0.02795102098764346 TAAAEINTY 9 Unmodified _TAAAEINTY_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.4583129882812 1 953.457453 952.450176 0.57823 0.00055132 0.075563 7.2046E-05 0.65379 0.00062336 953.4573283928297 39.561 0.35244 35.11 34.914 35.267 -4.4509 43 21 3 0 0 0 0.0082485 3 23537 23408;23503;23537 108 37.606 1 18358000 62797 7155 41823 42763 73279;73280;73281 73281 -0.02795102098764346 TAAAEINTY 9 Unmodified _TAAAEINTY_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2333068847656 2 477.232364 952.450176 0.8103 0.0003867 0.63162 0.00030143 1.4419 0.00068813 477.2325468716291 39.547 0.46927 35.096 34.84 35.31 -4.4509 65 28 3 0 0 0 0.0095811 2 23417 23417;23554 81.613 26.84 1 40750000 62798 7155 41823 42763 73282;73283 73282 -0.02795102098764346 TAAAFQKDQ 9 Unmodified _TAAAFQKDQ_ 0 0 0 REV__nc|ENSG00000132842|O00203-3|AP3B1 REV__nc|ENSG00000132842|O00203-3|AP3B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2440795898438 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 32.563 1 32.563 32.063 33.063 0 0 0 0 0.67877 1 17024 17024 10.074 1.3285 1 + 62799 19885 41824 42764 73284 73284 -0.013039934875791914 TAAAPAPGAQ 10 Unmodified _TAAAPAPGAQ_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.7232055664062 2 427.721967 853.429381 0.11709 5.008E-05 2.0296 0.00086808 2.1466 0.00091816 427.72254553684587 63.822 0.29393 63.822 63.636 63.93 0 18 11 2 0 0 0 0.56348 1 35599 35599 13.042 0.51092 1 698360 + 62800 18143 41825 42765 73285 73285 -0.0031964768777470454 TAAAPAPGAQ 10 Unmodified _TAAAPAPGAQ_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 427.721967 853.429381 0.11709 5.008E-05 2.0296 0.00086808 2.1466 0.00091816 427.72254553684587 63.822 0.29393 63.822 63.636 63.93 0 0.0089683 0.00023132 NaN 13.042 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 698360 + 62801 18143 41825 42765 -0.0031964768777470454 TAAAPAPGAQ 10 Unmodified _TAAAPAPGAQ_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 427.721967 853.429381 0.6588 0.00028178 1.7129 0.00073266 2.3717 0.0010144 427.72282492859995 64.289 0.27415 63.804 63.634 63.908 -0.48512 -0.0089683 -3.9522E-05 NaN 13.042 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 982920 + 62802 18143 41825 42765 -0.0031964768777470454 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(100)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.43310546875 1 910.43388 909.426604 -0.55722 -0.00050732 0.69019 0.00062837 0.13296 0.00012106 910.4344617774353 41.153 0.28004 41.153 41.024 41.304 0 35 13 4 0 0 0 0.0086629 2 22134 22134;22242 101.72 69.416 1 13270000 62803 2594 41826 42766 73286;73287 73286 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(71)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.719970703125 2 455.720578 909.426604 -0.13663 -6.2267E-05 0.11237 5.1211E-05 -0.02426 -1.1056E-05 455.7206808068739 41.183 0.25944 41.183 41.045 41.304 0 35 12 4 0 0 0 0.013472 1 22139 22139 70.716 47.567 1 17279000 62804 2594 41826 42766 73288 73288 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(140)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4345703125 1 910.43388 909.426604 -0.49978 -0.00045501 0.43382 0.00039496 -0.065956 -6.0049E-05 910.434460239631 41.451 0.25719 41.451 41.281 41.538 0 22 12 3 0 0 0 0.0012811 1 22360 22360 137.59 82.812 1 12184000 62805 2594 41826 42766 73289 73289 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(60)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7204895019531 2 455.720578 909.426604 -0.080246 -3.657E-05 -0.3392 -0.00015458 -0.41945 -0.00019115 455.7205078746217 41.427 0.25719 41.427 41.281 41.538 0 31 12 4 0 0 0 0.023164 1 22361 22361 60.39 39.518 1 27814000 62806 2594 41826 42766 73290 73290 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(110)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.4356079101562 1 910.43388 909.426604 0.88323 0.00080412 0.89006 0.00081034 1.7733 0.0016145 910.4344247756474 47.856 0.32273 42.622 42.451 42.774 -5.2339 44 19 3 0 0 0 0.0077963 2 29796 29664;29796 109.63 48.272 1 11611000 62807 2594 41826 42766 73291;73292 73292 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(67)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.721435546875 2 455.720578 909.426604 1.3878 0.00063245 -0.16037 -7.3085E-05 1.2274 0.00055937 455.72051875559777 47.856 0.34085 42.622 42.371 42.711 -5.2339 34 20 2 0 0 0 0.016184 1 29688 29688 67.344 41.945 1 24897000 62808 2594 41826 42766 73293 73293 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(71)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7210083007812 2 455.720578 909.426604 0.73083 0.00033305 0.14432 6.5767E-05 0.87514 0.00039882 455.7207523182281 48.148 0.43044 42.915 42.711 43.142 -5.2339 46 25 2 0 0 0 0.013472 2 29966 29831;29966 70.716 47.567 1 25317000 62809 2594 41826 42766 73294;73295 73295 446 -0.031732391369246216 TAAAPMIGY 9 Oxidation (M) _TAAAPM(Oxidation (M))IGY_ TAAAPM(1)IGY TAAAPM(110)IGY 0 0 1 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.43115234375 1 910.43388 909.426604 0.28064 0.0002555 0.19905 0.00018122 0.47968 0.00043672 910.4335937842917 48.092 0.32907 42.858 42.74 43.069 -5.2339 32 19 2 0 0 0 0.0077963 1 29927 29927 109.63 59.696 1 11109000 62810 2594 41826 42766 73296 73296 446 -0.031732391369246216 TAAAPMIGY 9 Unmodified _TAAAPMIGY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4373779296875 1 894.438966 893.431689 0.41277 0.0003692 -1.3232 -0.0011835 -0.91042 -0.00081432 894.4382310746348 50.866 0.13465 50.866 50.843 50.978 0 11 6 2 0 0 0 0.042911 1 28078 28078 48.346 27.475 1 1313500 62811 2594 41826 42767 73297 73297 -0.019289352743157906 TAAAPMIGY 9 Unmodified _TAAAPMIGY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 894.43994140625 1 894.438966 893.431689 1.018 0.00091058 0.67161 0.00060071 1.6897 0.0015113 894.4394202644037 58.772 0.48413 52.697 52.421 52.905 -6.0745 71 26 3 0 0 0 8.5836E-05 4 37677 37542;37568;37677;37806 153.26 103.59 1 51980000 62812 2594 41826 42767 73298;73299;73300;73301 73300 -0.019289352743157906 TAAAPMIGY 9 Unmodified _TAAAPMIGY_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7239685058594 2 447.723121 893.431689 1.5982 0.00071554 -0.44595 -0.00019966 1.1522 0.00051588 447.72305414181346 58.751 0.37639 52.677 52.475 52.851 -6.0745 34 20 2 0 0 0 0.023164 2 37603 37603;37735 60.39 31.903 1 16369000 62813 2594 41826 42767 73302;73303 73302 -0.019289352743157906 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.4410400390625 1 806.44068 805.433404 0.642 0.00051773 0.31126 0.00025102 0.95326 0.00076875 806.4406180653616 54.318 0.59831 54.318 54.091 54.689 0 74 26 4 0 0 0 0.0077963 3 30060 30060;30166;30270 109.63 24.273 1 92128000 62814 8466 41827 42768 73304;73305;73306 73304 0.022904418059511045 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.7243957519531 2 403.723978 805.433404 0.66604 0.0002689 0.17822 7.1951E-05 0.84425 0.00034085 403.72393743471446 54.327 0.33199 54.327 54.152 54.484 0 32 14 3 0 0 0 0.023164 1 30139 30139 60.39 13.469 1 3965900 62815 8466 41827 42768 73307 73307 0.022904418059511045 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.4412841796875 1 806.44068 805.433404 -0.25722 -0.00020743 0.55593 0.00044832 0.29871 0.00024089 806.4410296135366 54.838 0.43897 54.371 54.201 54.64 -0.46664 50 21 3 0 0 0 0.0077963 2 29777 29673;29777 109.63 20.202 1 30693000 62816 8466 41827 42768 73308;73309 73309 0.022904418059511045 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 806.4398803710938 1 806.44068 805.433404 0.34426 0.00027762 0.099692 8.0396E-05 0.44395 0.00035802 806.4409991618675 54.491 0.20495 54.424 54.319 54.523 -0.066936 13 9 2 0 0 0 0.012148 1 29564 29564 74.423 16.951 1 2731500 62817 8466 41827 42768 73310 73310 0.022904418059511045 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 806.4414672851562 1 806.44068 805.433404 0.79065 0.00063761 -0.15886 -0.00012811 0.63179 0.0005095 806.4404986466794 62.134 0.66754 55.958 55.654 56.322 -6.1757 94 37 3 0 0 0 0.0090851 4 39893 39893;40023;40156;40283 85.357 18.013 1 382790000 62818 8466 41827 42768 73311;73312;73313;73314 73311 0.022904418059511045 TAAAVGAVF 9 Unmodified _TAAAVGAVF_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000593233.1_1_19:5894755-5901370:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MSMS AL20221201_MKP_PDAC_01 4 403.7239685058594 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 62.112 1 55.936 55.436 56.436 -6.1757 0 0 0 0.020354 1 40055 40055 77.984 14.421 1 62819 8466 41827 42768 73315 73315 0.022904418059511045 TAAAVVGLLY 10 Unmodified _TAAAVVGLLY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 977.5654907226562 1 977.566609 976.559333 0.83101 0.00081236 -0.58242 -0.00056935 0.24859 0.00024301 977.5664550738176 79.507 0.34351 79.018 78.844 79.188 -0.48932 26 14 2 0 0 0 0.085354 2 43612 43502;43612 49.933 17.59 1 1863300 62820 9480 41828 42769 73316;73317 73317 0.0701152859138574 TAAAVVGLLY 10 Unmodified _TAAAVVGLLY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2863159179688 2 489.286943 976.559333 1.0758 0.00052637 -0.53454 -0.00026154 0.54124 0.00026482 489.28673138543667 79.481 0.34351 78.992 78.844 79.188 -0.48932 28 14 3 0 0 0 0.074936 1 43520 43520 52.268 25.385 1 1699800 62821 9480 41828 42769 73318 73318 0.0701152859138574 TAAAVVGLLY 10 Unmodified _TAAAVVGLLY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2886352539062 2 489.286943 976.559333 1.0623 0.00051979 -0.11389 -5.5727E-05 0.94844 0.00046406 489.28695295039375 87.066 0.41266 80.891 80.699 81.112 -6.1757 28 22 2 0 0 0 0.017277 2 57331 57331;57477 78.149 38.2 1 15796000 62822 9480 41828 42769 73319;73320 73319 0.0701152859138574 TAAAVVGLLY 10 Unmodified _TAAAVVGLLY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 977.568359375 1 977.566609 976.559333 0.87758 0.00085789 -0.44522 -0.00043523 0.43236 0.00042266 977.5671769244957 87.008 0.28582 80.833 80.77 81.056 -6.1757 21 15 2 0 0 0 0.020813 1 57358 57358 74.929 13.572 1 7167100 62823 9480 41828 42769 73321 73321 0.0701152859138574 TAAAVVGLLY 10 Unmodified _TAAAVVGLLY_ 0 0 0 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 ENSG00000186480|ENST00000340368|INSIG1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 489.286943 976.559333 0.6528 0.0003194 0.45542 0.00022283 1.1082 0.00054224 489.2868328204011 78.946 0.16856 79.001 78.888 79.056 0.05497 0.0047563 0.00070815 NaN 52.268 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1330600 62824 9480 41828 42769 0.0701152859138574 TAAAYTCLNA 10 Unmodified _TAAAYTCLNA_ 0 0 0 ENST00000533947.1_1_11:67808738-67810499:+|nuORF ENST00000533947.1_1_11:67808738-67810499:+|nuORF ENST00000533947.1_1_11:67808738-67810499:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7339477539062 2 499.734217 997.453881 NaN NaN NaN NaN NaN NaN NaN 13.465 1 13.475 12.975 13.975 0.0096512 0 0 0 1.0061 1 6642 6642 0 0 1 62825 14944 41829 42770 73322 73322 -0.04494755596579125 TAADAFLDLI 10 Unmodified _TAADAFLDLI_ 0 0 0 nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.277587890625 2 525.279315 1048.54408 -0.26585 -0.00013964 -0.020965 -1.1012E-05 -0.28681 -0.00015066 525.279184506653 55.738 0.44371 55.738 55.437 55.881 0 110 35 4 0 0 0 0.017277 2 30910 30910;31013 78.149 9.6938 1 64927000 62826 1265 41830 42771 73323;73324 73323 0.02174617003538515 TAADAFLDLI 10 Unmodified _TAADAFLDLI_ 0 0 0 nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.280517578125 2 525.279315 1048.54408 1.0095 0.00053027 -0.086821 -4.5605E-05 0.92269 0.00048467 525.2790400269988 63.063 0.51163 56.888 56.563 57.075 -6.1757 65 26 3 0 0 0 0.0575 2 40626 40626;40761 56.177 19.671 1 79476000 62827 1265 41830 42771 73325;73326 73325 0.02174617003538515 TAADAFLDLI 10 Unmodified _TAADAFLDLI_ 0 0 0 nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 nc|ENSG00000079215|P43003-2|SLC1A3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 525.279315 1048.54408 0.54842 0.00028807 3.0996 0.0016282 3.648 0.0019162 525.2828019336218 62.212 0.07148 56.036 55.984 56.055 -6.1757 0.14902 0.0032547 NaN 78.149 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 19553000 62828 1265 41830 42771 0.02174617003538515 TAADAVLCAY 10 Carbamidomethyl (C) _TAADAVLC(Carbamidomethyl (C))AY_ TAADAVLC(1)AY TAADAVLC(61)AY 0 1 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7468872070312 2 527.747324 1053.4801 1.1473 0.0006055 -0.11793 -6.2236E-05 1.0294 0.00054327 527.7470227386625 60.96 0.5224 54.812 54.532 55.055 -6.1478 71 27 3 0 0 0 0.043729 1 39200 39200 61.357 35.958 1 65680000 62829 7249 41831 42772 73327 73327 711 -0.04450486425071176 TAADELEAF 9 Unmodified _TAADELEAF_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7248840332031 2 483.724372 965.434192 0.41877 0.00020257 -1.2037 -0.00058227 -0.78495 -0.0003797 483.72438325548814 56.888 0.4068 56.888 56.728 57.135 0 24 17 2 0 0 0 0.052168 1 31647 31647 44.407 19.008 1 2064500 62830 9852 41832 42773 73328 73328 -0.04990808335674046 TAADIFKQY 9 Unmodified _TAADIFKQY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7710571289062 2 528.771657 1055.52876 -0.22936 -0.00012128 -0.1275 -6.7419E-05 -0.35686 -0.0001887 528.7711280498843 48.539 0.55651 48.539 48.251 48.808 0 62 26 3 0 0 0 0.013041 1 26675 26675 71.922 33.948 1 113210000 62831 2002 41833 42774 73329 73329 0.00321750206330762 TAADIFKQY 9 Unmodified _TAADIFKQY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7718505859375 2 528.771657 1055.52876 0.20732 0.00010963 0.50909 0.00026919 0.71641 0.00037882 528.7715947832501 48.848 0.57242 48.476 48.162 48.734 -0.37172 91 30 4 0 0 0 0.0087873 2 26289 26176;26289 103.35 53.421 1 119430000 62832 2002 41833 42774 73330;73331 73331 0.00321750206330762 TAADIFKQY 9 Unmodified _TAADIFKQY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7726440429688 2 528.771657 1055.52876 0.30635 0.00016199 0.23834 0.00012603 0.54469 0.00028802 528.7715954233925 48.545 0.25421 48.501 48.377 48.631 -0.04369 30 12 3 0 0 0 0.0082475 1 26178 26178 92.653 59.868 1 7244300 62833 2002 41833 42774 73332 73332 0.00321750206330762 TAADIFKQY 9 Unmodified _TAADIFKQY_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7720336914062 2 528.771657 1055.52876 0.89834 0.00047502 0.90965 0.000481 1.808 0.00095602 528.7716946246163 54.512 0.73196 48.647 48.211 48.943 -5.8653 143 44 4 0 0 0 0.0087807 2 34600 34600;34741 106.94 68.966 1 510540000 62834 2002 41833 42774 73333;73334 73333 0.00321750206330762 TAADLNLVLY 10 Unmodified _TAADLNLVLY_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917377-67917635:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.8014526367188 2 546.800414 1091.58628 0.27169 0.00014856 1.7914 0.00097955 2.0631 0.0011281 546.8019416172333 79.405 0.34235 79.405 79.181 79.523 0 43 13 4 0 0 0 0.27276 1 44053 44053 29.082 15.176 1 2627800 62835 635 41834 42775 73335 73335 0.04414592411899321 TAADLNLVLY 10 Unmodified _TAADLNLVLY_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917377-67917635:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.80224609375 2 546.800414 1091.58628 0.83506 0.00045661 0.81631 0.00044636 1.6514 0.00090297 546.8011480631525 79.945 0.37836 79.455 79.235 79.614 -0.48932 38 15 4 0 0 0 0.11755 2 43811 43708;43811 43.858 12.758 1 4444300 62836 635 41834 42775 73336;73337 73337 0.04414592411899321 TAADLNLVLY 10 Unmodified _TAADLNLVLY_ 0 0 0 ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4;ENST00000572067.1_1_16:67917377-67917635:+|nuORF ENSG00000038358|ENST00000358933|EDC4 ENSG00000038358|ENST00000358933|EDC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8004150390625 2 546.800414 1091.58628 0.91714 0.00050149 1.7142 0.00093732 2.6313 0.0014388 546.8011968328541 87.346 0.58823 81.171 80.963 81.551 -6.1757 55 31 2 0 0 0 0.046375 2 57575 57575;57705 60.074 23.947 1 47018000 62837 635 41834 42775 73338;73339 73338 0.04414592411899321 TAADLVPIF 9 Unmodified _TAADLVPIF_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000577667.1_1_18:9557167-9559563:-|nuORF;ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.528076171875 1 946.52441 945.517133 -0.32681 -0.00030933 1.1408 0.0010798 0.81399 0.00077047 946.5255419098428 89.075 0.34348 89.075 88.89 89.234 0 31 17 2 0 0 0 0.03327 2 49340 49235;49340 53.576 15.424 1 1529500 62838 16284 41835 42776 73340;73341 73341 0.04219553182997515 TAADLVPIF 9 Unmodified _TAADLVPIF_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000577667.1_1_18:9557167-9559563:-|nuORF;ENST00000493688.5_1_20:56813265-56820980:-|nuORF;ENST00000497138.5_1_20:56807969-56820980:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.5257568359375 1 946.52441 945.517133 0.37459 0.00035456 0.35338 0.00033448 0.72797 0.00068904 946.5246508569073 89.59 0.43355 89.089 88.843 89.277 -0.50171 42 18 3 0 0 0 0.0094915 2 48995 48895;48995 81.864 37.457 1 3064100 62839 16284 41835 42776 73342;73343 73343 0.04219553182997515 TAADSFEF 8 Unmodified _TAADSFEF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.3788452148438 1 887.37814 886.370863 0.24906 0.00022101 0.01774 1.5742E-05 0.2668 0.00023675 887.3781506915692 58.049 0.38893 58.049 57.817 58.206 0 37 15 3 0 0 0 0.078065 2 32341 32232;32341 114.94 61.368 1 7664800 62840 1980 41836 42777 73344;73345 73345 -0.07686749052902542 TAADSFEF 8 Unmodified _TAADSFEF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 887.3760375976562 1 887.37814 886.370863 -0.089583 -7.9494E-05 -0.39589 -0.0003513 -0.48547 -0.0004308 887.3777278976884 65.864 0.38751 59.688 59.51 59.898 -6.1757 31 22 2 0 0 0 0.13832 2 42850 42716;42850 89.427 35.851 1 12951000 62841 1980 41836 42777 73346;73347 73347 -0.07686749052902542 TAADTCIIF 9 Carbamidomethyl (C) _TAADTC(Carbamidomethyl (C))IIF_ TAADTC(1)IIF TAADTC(67)IIF 0 1 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000562806.1_1_16:53283882-53288565:+|nuORF;ENST00000565119.1_1_16:53279647-53284265:+|nuORF;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2449340820312 2 506.244418 1010.47428 0.62501 0.00031641 -0.28856 -0.00014608 0.33645 0.00017032 506.2443801123433 67.076 0.46416 67.076 66.878 67.342 0 61 20 4 0 0 0 0.016184 2 37450 37347;37450 67.344 38.262 1 16219000 62842 8091;8666;3755;1884 41837 42778 73348;73349 73349 183 -0.03053584936731113 TAADTCIIF 9 Carbamidomethyl (C) _TAADTC(Carbamidomethyl (C))IIF_ TAADTC(1)IIF TAADTC(78)IIF 0 1 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9;ENST00000562806.1_1_16:53283882-53288565:+|nuORF;ENST00000565119.1_1_16:53279647-53284265:+|nuORF;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000100888|ENST00000646647|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENST00000476641.2_1_20:40101874-40113142:-|nuORF;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000124177|ENST00000373233|CHD6;ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2455444335938 2 506.244418 1010.47428 0.80467 0.00040736 0.26403 0.00013366 1.0687 0.00054102 506.24455529774724 72.789 0.77097 66.614 66.372 67.143 -6.1757 53 38 2 0 0 0 0.010877 2 47593 47593;47716 77.984 41.857 1 24527000 62843 8091;8666;3755;1884 41837 42778 73350;73351 73350 183 -0.03053584936731113 TAADTVIFY 9 Unmodified _TAADTVIFY_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7533264160156 2 500.752933 999.491313 0.51552 0.00025815 0.027841 1.3941E-05 0.54336 0.00027209 500.75309277095914 66.308 0.42081 66.308 66.091 66.512 0 45 18 3 0 0 0 0.016184 1 37028 37028 67.344 31.3 1 6598800 62844 4098 41838 42779 73352 73352 -0.008453410593006083 TAADTVIIY 9 Unmodified _TAADTVIIY_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.51708984375 1 966.514239 965.506963 0.34851 0.00033684 -0.21452 -0.00020734 0.13399 0.0001295 966.5139150530268 57.979 0.47923 57.979 57.754 58.233 0 61 19 4 0 0 0 0.016184 4 32193 32193;32238;32300;32422 67.344 0 1 30333000 62845 3486 41839 42780 73353;73354;73355;73356 73353 0.022829454577504293 TAADTVIIY 9 Unmodified _TAADTVIIY_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7607116699219 2 483.760758 965.506963 0.46249 0.00022374 -0.16782 -8.1183E-05 0.29468 0.00014255 483.76064502899453 57.973 0.58579 57.973 57.754 58.34 0 75 23 5 0 0 0 0.016184 2 32276 32276;32389 67.344 0 1 67334000 62846 3486 41839 42780 73357;73358 73357 0.022829454577504293 TAADTVIIY 9 Unmodified _TAADTVIIY_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.514892578125 1 966.514239 965.506963 0.64641 0.00062476 -0.18232 -0.00017621 0.46409 0.00044855 966.5140928771855 66.106 0.53799 59.931 59.659 60.197 -6.1757 78 30 3 0 0 0 0.012148 4 42811 42811;42864;42954;43093 74.423 0 1 81904000 62847 3486 41839 42780 73359;73360;73361;73362 73359 0.022829454577504293 TAADTVIIY 9 Unmodified _TAADTVIIY_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2613830566406 2 483.760758 965.506963 0.87287 0.00042226 0.045934 2.2221E-05 0.9188 0.00044448 483.7608630691167 66.066 0.53799 59.891 59.659 60.197 -6.1757 97 30 4 0 0 0 0.016184 4 42830 42830;42858;42987;43127 67.344 0 1 136220000 62848 3486 41839 42780 73363;73364;73365;73366 73363 0.022829454577504293 TAADTVIIY 9 Unmodified _TAADTVIIY_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 483.760758 965.506963 0.37965 0.00018366 -0.43887 -0.00021231 -0.059225 -2.8651E-05 483.7608555764647 58.556 0.1681 58.065 57.943 58.111 -0.49079 0.046256 -0.00025358 NaN 67.344 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 811420 62849 3486 41839 42780 0.022829454577504293 TAAETHYTY 9 Unmodified _TAAETHYTY_ 0 0 0 ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 ENST00000529476.1_1_1:161011414-161013065:-|nuORF ENST00000529476.1_1_1:161011414-161013065:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7353515625 2 528.735271 1055.45599 0.013369 7.0685E-06 0.55017 0.0002909 0.56354 0.00029796 528.7355612800399 23.31 0.51416 23.31 22.955 23.469 0 62 25 4 0 0 0 0.0055767 2 11915 11817;11915 115.69 83.387 1 7848200 62850 6607 41840 42781 73367;73368 73368 -0.06952003587070976 TAAETHYTY 9 Unmodified _TAAETHYTY_ 0 0 0 ENST00000529476.1_1_1:161011414-161013065:-|nuORF;ENST00000491629.5_1_1:161011414-161013065:-|nuORF;ENSG00000158773|ENST00000368021|USF1;nc|ENSG00000158773|P22415-2|USF1 ENST00000529476.1_1_1:161011414-161013065:-|nuORF ENST00000529476.1_1_1:161011414-161013065:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7354125976562 2 528.735271 1055.45599 0.12684 6.7066E-05 0.066501 3.5161E-05 0.19334 0.00010223 528.7354476846101 26.065 0.31243 23.114 22.969 23.281 -2.9511 32 18 2 0 0 0 0.0018186 2 14272 14272;14403 133.7 101.4 1 13426000 62851 6607 41840 42781 73369;73370 73369 -0.06952003587070976 TAAEVQQVL 9 Unmodified _TAAEVQQVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000104413|Q6NXG1-2|ESRP1 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7640380859375 2 479.763832 957.513111 0.89285 0.00042836 -0.57004 -0.00027348 0.32281 0.00015487 479.763564897456 46.102 0.37629 46.102 45.918 46.294 0 45 17 3 0 0 0 0.013323 1 25128 25128 71.134 16.36 1 30856000 62852 2100;2205 41841 42782 73371 73371 0.032654636892857525 TAAEVQQVL 9 Unmodified _TAAEVQQVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000104413|Q6NXG1-2|ESRP1 ENSG00000103067|ENST00000473183|ESRP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.4725341796875 1 958.520387 957.513111 0.58082 0.00055673 3.5839 0.0034352 4.1647 0.0039919 958.5245121885317 46.079 0.29475 46.079 45.957 46.252 0 19 13 2 0 0 0 0.032564 1 25151 25151 61.357 19.263 1 2713500 62853 2100;2205 41841 42782 73372 73372 0.032654636892857525 TAAEVQQVL 9 Unmodified _TAAEVQQVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000104413|Q6NXG1-2|ESRP1 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7640380859375 2 479.763832 957.513111 0.80254 0.00038503 -0.21914 -0.00010513 0.58341 0.0002799 479.7636441711008 53.341 0.42456 47.536 47.334 47.759 -5.8042 65 26 3 0 0 0 0.0082485 2 33606 33606;33738 96.285 33.712 1 62360000 62854 2100;2205 41841 42782 73373;73374 73373 0.032654636892857525 TAAEVQQVL 9 Unmodified _TAAEVQQVL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF;nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000104413|Q6NXG1-2|ESRP1 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 958.5225219726562 1 958.520387 957.513111 0.56702 0.0005435 0.50525 0.0004843 1.0723 0.0010278 958.5209989166203 53.328 0.27403 47.524 47.419 47.693 -5.8042 23 17 2 0 0 0 0.0014543 1 33701 33701 136.33 32.585 1 13355000 62855 2100;2205 41841 42782 73375 73375 0.032654636892857525 TAAFEERRF 9 Unmodified _TAAFEERRF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1936950683594 3 376.192845 1125.55671 -0.33604 -0.00012641 1.0994 0.00041359 0.76339 0.00028718 376.19326434252395 29.375 0.22922 29.375 29.222 29.451 0 35 10 4 0 0 0 0.036857 1 15176 15176 40.725 25.768 1 7710700 62856 16412 41842 42783 73376 73376 -0.0010492681358300615 TAAFEERRF 9 Unmodified _TAAFEERRF_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1950378417969 3 376.192845 1125.55671 1.4976 0.0005634 2.5382 0.00095485 4.0358 0.0015183 376.1941552149888 32.463 0.37826 28.606 28.418 28.796 -3.8562 44 20 3 0 0 0 0.15471 1 18503 18503 20.581 11.037 1 12472000 62857 16412 41842 42783 73377 73377 -0.0010492681358300615 TAAGLMHTF 9 Oxidation (M) _TAAGLM(Oxidation (M))HTF_ TAAGLM(1)HTF TAAGLM(82)HTF 0 0 1 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7311401367188 2 482.731477 963.448402 -0.51615 -0.00024916 -0.47257 -0.00022812 -0.98871 -0.00047728 482.7314226161361 33.061 0.27935 33.061 32.87 33.15 0 42 13 4 0 0 0 0.0095811 1 17276 17276 81.613 52.531 1 21550000 62858 1434 41843 42784 73378 73378 239 -0.0347843438835298 TAAGLMHTF 9 Oxidation (M) _TAAGLM(Oxidation (M))HTF_ TAAGLM(1)HTF TAAGLM(50)HTF 0 0 1 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7309265136719 2 482.731477 963.448402 -0.3017 -0.00014564 -0.32128 -0.00015509 -0.62298 -0.00030073 482.73159600135415 33.273 0.32063 33.273 33.15 33.47 0 35 16 3 0 0 0 0.039985 1 17401 17401 49.933 19.296 1 22403000 62859 1434 41843 42784 73379 73379 239 -0.0347843438835298 TAAGLMHTF 9 Oxidation (M) _TAAGLM(Oxidation (M))HTF_ TAAGLM(1)HTF TAAGLM(96)HTF 0 0 1 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7314147949219 2 482.731477 963.448402 -0.13586 -6.5583E-05 0.89281 0.00043099 0.75695 0.0003654 482.7319334943655 33.11 0.24105 32.95 32.787 33.028 -0.15918 22 9 3 0 0 0 0.0082485 1 17241 17241 96.285 58.109 1 10498000 62860 1434 41843 42784 73380 73380 239 -0.0347843438835298 TAAGLMHTF 9 Oxidation (M) _TAAGLM(Oxidation (M))HTF_ TAAGLM(1)HTF TAAGLM(71)HTF 0 0 1 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7319946289062 2 482.731477 963.448402 -0.13789 -6.6561E-05 0.053907 2.6023E-05 -0.083978 -4.0539E-05 482.7318446214609 33.337 0.26858 33.178 33.028 33.297 -0.15918 22 10 3 0 0 0 0.013323 1 17344 17344 71.134 40.497 1 7248700 62861 1434 41843 42784 73381 73381 239 -0.0347843438835298 TAAGLMHTF 9 Oxidation (M) _TAAGLM(Oxidation (M))HTF_ TAAGLM(1)HTF TAAGLM(89)HTF 0 0 1 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7319641113281 2 482.731477 963.448402 1.3003 0.00062771 -1.3274 -0.00064079 -0.027102 -1.3083E-05 482.7312287555328 37.366 0.60568 33.082 32.782 33.387 -4.2835 75 36 3 0 0 0 0.008678 3 22055 21805;21929;22055 88.904 56.118 1 31084000 62862 1434 41843 42784 73382;73383;73384 73384 239 -0.0347843438835298 TAAGLMHTF 9 Unmodified _TAAGLMHTF_ 0 0 0 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7339477539062 2 474.73402 947.453487 0.75059 0.00035633 -0.019896 -9.4453E-06 0.73069 0.00034689 474.7340222064255 47.509 0.26513 47.157 47.042 47.308 -0.3526 26 12 3 0 0 0 0.0083938 1 25466 25466 108 54.164 1 6058000 62863 1434 41843 42785 73385 73385 -0.02234130525744149 TAAGLMHTF 9 Unmodified _TAAGLMHTF_ 0 0 0 nc|ENSG00000086475|P49903-4|SEPHS1;nc|ENSG00000086475|P49903-3|SEPHS1;ENSG00000086475|ENST00000327347|SEPHS1;ENSG00000179918|ENST00000478753|SEPHS2;ENST00000446112.1_1_X:72989760-72990255:+|nuORF nc|ENSG00000086475|P49903-4|SEPHS1 nc|ENSG00000086475|P49903-4|SEPHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7349243164062 2 474.73402 947.453487 1.0386 0.00049306 -0.56388 -0.00026769 0.47473 0.00022537 474.733903019101 52.799 0.48644 47.064 46.817 47.304 -5.7345 61 26 3 0 0 0 0.0055767 2 33234 33234;33354 115.69 69.992 1 124350000 62864 1434 41843 42785 73386;73387 73386 -0.02234130525744149 TAAGNTISM 9 Unmodified _TAAGNTISM_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 ENSG00000130940|ENST00000377022|CASZ1 MSMS AL20221201_MKP_PDAC_01 4 433.2078247070312 2 433.207835 864.401117 NaN NaN NaN NaN NaN NaN NaN 38.856 1 34.405 33.905 34.905 -4.4509 0 0 0 0.20153 1 22978 22978 30.637 10.183 1 62865 4278 41844 42786 73388 73388 -0.03650713659351368 TAAGRLLVL 9 Unmodified _TAAGRLLVL_ 0 0 0 REV__ENST00000561573.1_1_15:90806992-90815017:+|nuORF REV__ENST00000561573.1_1_15:90806992-90815017:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.2956848144531 2 457.295102 912.575651 NaN NaN NaN NaN NaN NaN NaN 68.245 1 62.069 61.569 62.569 -6.1757 0 0 0 0.024473 1 44527 44527 72.968 4.8872 1 + 62866 28842 41845 42787 73389 73389 0.11586654548113984 TAAGVTTMSGK 11 Unmodified _TAAGVTTMSGK_ 0 0 0 ENST00000366855.10_1_6:167366013-167369926:-|nuORF ENST00000366855.10_1_6:167366013-167369926:-|nuORF ENST00000366855.10_1_6:167366013-167369926:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2801513671875 2 512.260599 1022.50665 0.64762 0.00033175 0.79912 0.00040936 1.4467 0.00074111 512.2612852327115 67.193 0.55949 61.017 60.808 61.368 -6.1757 60 22 3 0 0 0 0.28226 1 43944 43944 17.113 17.113 1 43301000 62867 12212 41846 42788 73390 73390 -0.0037079753374200664 TAAHFIEYY 9 Unmodified _TAAHFIEYY_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ;nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENST00000450600.1_1_7:56296937-56297204:-|nuORF ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7647094726562 2 557.763832 1113.51311 1.0379 0.00057889 -0.28961 -0.00016153 0.74827 0.00041736 557.7638530060711 50.161 0.24538 49.768 49.627 49.872 -0.3923 16 11 2 0 0 0 0.2143 1 27017 27017 21.747 9.2151 1 1698000 62868 2496 41847 42789 73391 73391 -0.03910536310718271 TAAHFIEYY 9 Unmodified _TAAHFIEYY_ 0 0 0 ENSG00000107443|ENST00000465148|CCNJ;nc|ENSG00000107443|Q5T5M9-2|CCNJ;nc|ENSG00000107443|Q5T5M9|CCNJ;ENST00000450600.1_1_7:56296937-56297204:-|nuORF ENSG00000107443|ENST00000465148|CCNJ ENSG00000107443|ENST00000465148|CCNJ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.763832 1113.51311 0.84103 0.0004691 -0.28104 -0.00015675 0.55999 0.00031234 557.7640333593737 49.669 0.1487 49.669 49.606 49.754 0 -0.049478 4.5391E-06 NaN 21.747 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1413900 62869 2496 41847 42789 -0.03910536310718271 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.4959106445312 1 942.49311 941.485833 -0.12258 -0.00011553 1.2146 0.0011448 1.0921 0.0010293 942.4941423374576 63.791 0.38691 63.791 63.543 63.93 0 36 15 3 0 0 0 0.026094 2 35517 35517;35619 57.471 26.181 1 4378900 62870 3666 41848 42790 73392;73393 73392 0.012749801488780577 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7508544921875 2 471.750193 941.485833 0.3267 0.00015412 0.70119 0.00033079 1.0279 0.00048491 471.75061185678027 63.783 0.36348 63.783 63.59 63.953 0 26 14 3 0 0 0 0.095405 1 35546 35546 34.102 15.967 1 1202400 62871 3666 41848 42790 73394 73394 0.012749801488780577 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 942.4947509765625 1 942.49311 941.485833 0.60499 0.0005702 0.71931 0.00067794 1.3243 0.0012481 942.4937711303489 64.315 0.35957 63.83 63.634 63.993 -0.48512 41 16 3 0 0 0 0.016184 2 35127 35023;35127 67.344 29.193 1 5863000 62872 3666 41848 42790 73395;73396 73396 0.012749801488780577 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7509460449219 2 471.750193 941.485833 0.73554 0.00034699 0.46364 0.00021872 1.1992 0.00056571 471.75025548262306 64.299 0.29614 63.814 63.675 63.971 -0.48512 31 13 3 0 0 0 0.087258 1 35073 35073 36.044 7.5574 1 1621100 62873 3666 41848 42790 73397 73397 0.012749801488780577 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.4937744140625 1 942.49311 941.485833 0.54225 0.00051106 0.47478 0.00044747 1.017 0.00095854 942.4932696206937 70.87 0.39878 64.695 64.443 64.842 -6.1757 33 20 2 0 0 0 0.0083087 2 46237 46237;46350 97.075 44.806 1 27675000 62874 3666 41848 42790 73398;73399 73398 0.012749801488780577 TAAIGYLAY 9 Unmodified _TAAIGYLAY_ 0 0 0 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 ENSG00000122873|ENST00000333926|CISD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7511291503906 2 471.750193 941.485833 1.0022 0.0004728 -1.4067 -0.00066361 -0.40446 -0.00019081 471.75020943171785 70.732 0.38445 64.556 64.496 64.88 -6.1757 38 19 3 0 0 0 0.016184 1 46245 46245 67.344 25.249 1 26015000 62875 3666 41848 42790 73400 73400 0.012749801488780577 TAAIQAILY 9 Unmodified _TAAIQAILY_ 0 0 0 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2783813476562 2 482.279118 962.543683 0.65878 0.00031772 -0.58161 -0.0002805 0.077176 3.722E-05 482.2790706187056 71.861 0.33275 71.385 71.216 71.549 -0.47609 22 12 2 0 0 0 0.024882 1 39317 39317 58.679 20.705 1 1224800 62876 10151 41849 42791 73401 73401 0.06091242074319325 TAAIQIEVT 9 Unmodified _TAAIQIEVT_ 0 0 0 ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.5248413085938 1 945.525138 944.517862 -0.50596 -0.00047839 0.46915 0.00044359 -0.036807 -3.4802E-05 945.5257953081897 71.752 0.29204 71.752 71.548 71.84 0 22 12 2 0 0 0 0.19127 1 39913 39913 24.021 1.2843 1 1291700 62877 14464 41850 42792 73402 73402 0.04338347832026557 TAAKAILLY 9 Unmodified _TAAKAILLY_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2972106933594 2 482.29731 962.580068 0.45129 0.00021766 0.13158 6.3461E-05 0.58287 0.00028112 482.29723740349965 52.947 0.33146 52.495 52.299 52.631 -0.45173 34 16 3 0 0 0 0.047788 1 28605 28605 45.7 13.394 1 3183300 62878 8577 41851 42793 73403 73403 0.09728118971042932 TAAKAILLY 9 Unmodified _TAAKAILLY_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.297607421875 2 482.29731 962.580068 0.87384 0.00042145 -0.17078 -8.2368E-05 0.70305 0.00033908 482.2971835632941 52.582 0.24247 52.523 52.407 52.65 -0.058918 23 11 3 0 0 0 0.078314 1 28484 28484 38.176 12.776 1 3020000 62879 8577 41851 42793 73404 73404 0.09728118971042932 TAALFILP 8 Unmodified _TAALFILP_ 0 0 0 ENST00000435074.5_1_6:33080250-33086274:+|nuORF ENST00000435074.5_1_6:33080250-33086274:+|nuORF ENST00000435074.5_1_6:33080250-33086274:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2089233398438 2 423.260197 844.50584 NaN NaN NaN NaN NaN NaN NaN 18.359 1 18.382 17.882 18.882 0.023106 0 0 0 0.97444 1 9200 9200 0.79363 0 1 62880 13309 41852 42794 73405 73405 0.07736775879516244 TAALGSGYSF 10 Unmodified _TAALGSGYSF_ 0 0 0 REV__ENSG00000112972|ENST00000325110|HMGCS1 REV__ENSG00000112972|ENST00000325110|HMGCS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.1982116699219 2 487.234907 972.455261 0.25984 0.0001266 -0.65114 -0.00031726 -0.3913 -0.00019066 487.2343693900827 58.595 0.23212 58.595 58.467 58.699 0 16 9 2 0 0 0 0.22489 1 32635 32635 18.146 0 1 687830 + 62881 18845 41853 42795 73406 73406 -0.03206798236135455 TAALHLDF 8 Unmodified _TAALHLDF_ 0 0 0 REV__nc|ENSG00000264058|Q8N1A0-2|KRT222 REV__nc|ENSG00000264058|Q8N1A0-2|KRT222 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2330627441406 2 444.23471 886.454868 0.12954 5.7547E-05 -2.141 -0.00095112 -2.0115 -0.00089358 444.23369024982946 35.644 0.26186 35.644 35.554 35.816 0 17 12 2 0 0 0 0.70294 1 18878 18878 16.942 0 1 1706000 + + 62882 16886 41854 42796 73407 73407 0.007098268346567238 TAALSSYYF 9 Unmodified _TAALSSYYF_ 0 0 0 nc|ENSG00000082556|P41145-2|OPRK1;ENSG00000082556|ENST00000265572|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 nc|ENSG00000082556|P41145-2|OPRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.743896484375 2 511.745108 1021.47566 0.42369 0.00021682 -2.0362 -0.001042 -1.6125 -0.0008252 511.7436071273533 66.327 0.31662 66.327 66.195 66.512 0 16 13 2 0 0 0 0.34999 1 37011 37011 14.838 1.3304 1 612260 62883 1349 41855 42797 73408 73408 -0.03421627576335595 TAALSYVL 8 Unmodified _TAALSYVL_ 0 0 0 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.4721069335938 1 837.471646 836.46437 -0.48329 -0.00040474 1.3721 0.0011491 0.88883 0.00074437 837.4727458354769 69.392 0.3445 68.913 68.742 69.086 -0.47903 24 14 2 0 0 0 0.46494 2 37883 37883;37987 38.151 6.0342 1 2576500 62884 6818 41856 42798 73409;73410 73409 0.03959595120170434 TAALSYVL 8 Unmodified _TAALSYVL_ 0 0 0 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 ENSG00000161921|ENST00000293778|CXCL16 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 837.471646 836.46437 0.10347 8.6657E-05 0.20717 0.0001735 0.31065 0.00026016 837.4718567754271 68.97 0.33898 68.97 68.764 69.103 0 0.02849 -0.00061198 NaN 38.151 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1453300 62885 6818 41856 42798 0.03959595120170434 TAAMMNSHL 9 Unmodified _TAAMMNSHL_ 0 0 0 REV__ENSG00000083290|ENST00000395544|ULK2 REV__ENSG00000083290|ENST00000395544|ULK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2228088378906 2 488.222962 974.431372 -0.39655 -0.0001936 1.8468 0.00090165 1.4502 0.00070804 488.2237258001587 33.737 0.20737 33.737 33.633 33.841 0 24 10 3 0 0 0 0.06294 1 17728 17728 41.84 11.999 1 2195400 + 62886 17716 41857 42799 73411 73411 -0.05686678265817591 TAAMMNSHL 9 Unmodified _TAAMMNSHL_ 0 0 0 REV__ENSG00000083290|ENST00000395544|ULK2 REV__ENSG00000083290|ENST00000395544|ULK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.222962 974.431372 -0.39655 -0.0001936 1.8468 0.00090165 1.4502 0.00070804 488.2237258001587 33.737 0.20737 33.737 33.633 33.841 0 0 0 NaN 41.84 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2195400 + 62887 17716 41857 42799 -0.05686678265817591 TAANEDYNLY 10 Unmodified _TAANEDYNLY_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2578125 2 587.256568 1172.49858 -0.43581 -0.00025593 1.2747 0.00074859 0.83891 0.00049266 587.2569637939247 19.854 0.15165 19.854 19.754 19.905 0 15 11 2 0 0 0 0.69064 1 9940 9940 3.9444 0 1 404610 62888 7266 41858 42800 73412 73412 -0.08076653249509036 TAANEDYNLY 10 Unmodified _TAANEDYNLY_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2547607421875 2 587.256568 1172.49858 NaN NaN NaN NaN NaN NaN NaN 26.497 1 26.497 25.997 26.997 0 0 0 0 0.96981 1 13623 13623 3.9444 0 1 62889 7266 41858 42800 73413 73413 -0.08076653249509036 TAANFIQEM 9 Oxidation (M) _TAANFIQEM(Oxidation (M))_ TAANFIQEM(1) TAANFIQEM(86) 0 0 1 ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7395629882812 2 520.739499 1039.46445 0.40411 0.00021044 -0.85813 -0.00044686 -0.45402 -0.00023643 520.7390194091075 39.679 0.3245 39.679 39.508 39.832 0 40 15 3 0 0 0 0.0090524 1 21236 21236 85.642 47.668 1 7466700 62890 3204 41859 42801 73414 73414 569 -0.05370772942114854 TAANVYHLL 9 Unmodified _TAANVYHLL_ 0 0 0 ENST00000456899.6_1_8:121457695-121463322:+|nuORF;ENST00000522308.1_1_8:121457695-121463626:+|nuORF;nc|ENSG00000172167|Q96DY7-3|MTBP;ENSG00000172167|ENST00000305949|MTBP ENST00000456899.6_1_8:121457695-121463322:+|nuORF ENST00000456899.6_1_8:121457695-121463322:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2744445800781 2 501.274367 1000.53418 -0.10597 -5.312E-05 1.2864 0.00064486 1.1805 0.00059174 501.27461542164673 54.942 0.31939 54.464 54.309 54.629 -0.47798 31 15 3 0 0 0 0.087258 1 29784 29784 36.044 16.787 1 3068800 62891 8187 41860 42802 73415 73415 0.033934737887989286 TAANVYHLL 9 Unmodified _TAANVYHLL_ 0 0 0 ENST00000456899.6_1_8:121457695-121463322:+|nuORF;ENST00000522308.1_1_8:121457695-121463626:+|nuORF;nc|ENSG00000172167|Q96DY7-3|MTBP;ENSG00000172167|ENST00000305949|MTBP ENST00000456899.6_1_8:121457695-121463322:+|nuORF ENST00000456899.6_1_8:121457695-121463322:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 501.274367 1000.53418 1.1388 0.00057085 0.66437 0.00033303 1.8032 0.00090388 501.2746031253465 54.462 0.19904 54.462 54.398 54.597 0 -0.00083838 -0.00037884 NaN 36.044 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 929090 62892 8187 41860 42802 0.033934737887989286 TAAPEPPPPP 10 Unmodified _TAAPEPPPPP_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2532043457031 2 487.2531 972.491647 0.4778 0.00023281 0.20324 9.9029E-05 0.68104 0.00033184 487.25317707672536 57.773 0.35768 57.773 57.633 57.99 0 32 15 3 0 0 0 0.38092 1 32155 32155 22.736 2.2827 1 4186000 + 62893 22782 41861 42803 73416 73416 0.004300786605654139 TAAPEPPPPP 10 Unmodified _TAAPEPPPPP_ 0 0 0 REV__ENSG00000174282|ENST00000380599|ZBTB4 REV__ENSG00000174282|ENST00000380599|ZBTB4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.79296875 2 487.2531 972.491647 -0.6123 -0.00029834 1.063 0.00051795 0.45071 0.00021961 487.2535961246959 28.242 0.16255 28.242 28.149 28.311 0 14 7 2 0 0 0 0.22667 1 14591 14591 15.847 1.0089 1 1264500 + 62894 22782 41861 42803 73417 73417 0.004300786605654139 TAAPGRFSF 9 Unmodified _TAAPGRFSF_ 0 0 0 ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1 ENST00000565758.1_1_16:30441199-30441310:-|nuORF ENST00000565758.1_1_16:30441199-30441310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2463989257812 2 477.245609 952.476666 0.68975 0.00032918 0.35545 0.00016964 1.0452 0.00049882 477.2458715551123 46.542 0.25428 46.205 46.093 46.347 -0.33665 18 12 2 0 0 0 0.078314 1 24917 24917 38.176 11.292 1 5770100 62895 8875 41862 42804 73418 73418 -0.0014736841676494805 TAAPGRFSF 9 Unmodified _TAAPGRFSF_ 0 0 0 ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1 ENST00000565758.1_1_16:30441199-30441310:-|nuORF ENST00000565758.1_1_16:30441199-30441310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.245361328125 2 477.245609 952.476666 0.79721 0.00038047 -0.3508 -0.00016742 0.44641 0.00021305 477.2454024527516 46.262 0.35123 46.228 46.059 46.41 -0.033421 37 16 3 0 0 0 0.010301 2 24855 24855;24960 79.596 37.502 1 16183000 62896 8875 41862 42804 73419;73420 73419 -0.0014736841676494805 TAAPGRFSF 9 Unmodified _TAAPGRFSF_ 0 0 0 ENST00000565758.1_1_16:30441199-30441310:-|nuORF;ENSG00000179958|ENST00000319285|DCTPP1 ENST00000565758.1_1_16:30441199-30441310:-|nuORF ENST00000565758.1_1_16:30441199-30441310:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2452697753906 2 477.245609 952.476666 1.0337 0.00049331 -0.51513 -0.00024584 0.51853 0.00024747 477.2454042418242 51.154 0.42256 45.505 45.217 45.64 -5.649 38 25 2 0 0 0 0.017075 2 32195 32071;32195 66.457 24.362 1 61509000 62897 8875 41862 42804 73421;73422 73422 -0.0014736841676494805 TAAPLLLAM 9 Oxidation (M) _TAAPLLLAM(Oxidation (M))_ TAAPLLLAM(1) TAAPLLLAM(71) 0 0 1 nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000464953.2_1_2:11927207-11932234:+|nuORF nc|ENSG00000134324|Q14693|LPIN1 nc|ENSG00000134324|Q14693|LPIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7626647949219 2 458.762246 915.50994 0.31725 0.00014554 -0.44245 -0.00020298 -0.1252 -5.7436E-05 458.762469186626 64.87 0.32347 64.385 64.209 64.532 -0.48512 31 14 3 0 0 0 0.013472 1 35378 35378 70.716 23.795 1 1570000 62898 4594 41863 42805 73423 73423 836 0.04880497310909959 TAAPPAQPL 9 Unmodified _TAAPPAQPL_ 0 0 0 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.2422485351562 2 433.242535 864.470518 -0.00016216 -7.0253E-08 0.023881 1.0346E-05 0.023719 1.0276E-05 433.2425481769561 35.623 0.58989 35.623 35.442 36.032 0 69 29 3 0 0 0 0.008678 2 18792 18792;18893 88.904 26.84 1 14683000 62899 10254 41864 42806 73424;73425 73424 0.03286113351691711 TAAPPAQPL 9 Unmodified _TAAPPAQPL_ 0 0 0 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.4781494140625 1 865.477794 864.470518 -0.054499 -4.7167E-05 0.036108 3.1251E-05 -0.018391 -1.5917E-05 865.4779890790992 35.621 0.43584 35.621 35.479 35.914 0 36 21 2 0 0 0 0.0055767 3 18902 18800;18902;19011 115.69 34.079 1 4087200 62900 10254 41864 42806 73426;73427;73428 73427 0.03286113351691711 TAAPPAQPL 9 Unmodified _TAAPPAQPL_ 0 0 0 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.2428283691406 2 433.242535 864.470518 0.68129 0.00029516 0.053049 2.2983E-05 0.73434 0.00031815 433.24267006071096 41.515 0.79465 36.907 36.499 37.294 -4.6079 105 51 3 0 0 0 0.00856 4 25021 24755;24884;25021;25179 100.37 22.222 1 41426000 62901 10254 41864 42806 73429;73430;73431;73432 73431 0.03286113351691711 TAAPPAQPL 9 Unmodified _TAAPPAQPL_ 0 0 0 nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2 nc|ENSG00000204256|P25440-4|BRD2 nc|ENSG00000204256|P25440-4|BRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 865.4788818359375 1 865.477794 864.470518 0.23683 0.00020497 0.46341 0.00040107 0.70024 0.00060604 865.4780943403857 41.457 0.60271 36.849 36.599 37.202 -4.6079 53 39 2 0 0 0 0.0044708 3 24902 24775;24902;25065 118.89 44.558 1 12784000 62902 10254 41864 42806 73433;73434;73435 73434 0.03286113351691711 TAAPSASLL 9 Unmodified _TAAPSASLL_ 0 0 0 nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN nc|ENSG00000167470|Q504T8|MIDN nc|ENSG00000167470|Q504T8|MIDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4619750976562 1 830.46181 829.454533 0.095257 7.9107E-05 0.43085 0.0003578 0.5261 0.00043691 830.4621101464095 50.57 0.23062 50.57 50.433 50.664 0 15 10 2 0 0 0 0.07916 1 27860 27860 37.974 5.857 1 1282500 62903 7612 41865 42807 73436 73436 0.03298407114800739 TAAPSLKNAAF 11 Unmodified _TAAPSLKNAAF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7986450195312 2 545.798206 1089.58186 -0.035053 -1.9132E-05 0.92455 0.00050462 0.8895 0.00048549 545.7985373051661 42.987 0.15371 42.676 42.587 42.741 -0.31039 11 6 2 0 0 0 0.047603 1 22866 22866 51.415 26.016 1 4171100 62904 3219 41866 42808 73437 73437 0.04065127988974382 TAAPSLKNAAF 11 Unmodified _TAAPSLKNAAF_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB;ENST00000468818.1_1_1:111992163-111998855:+|nuORF;ENST00000369721.8_1_1:111992139-111998768:+|nuORF ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 545.798206 1089.58186 0.52872 0.00028857 -0.70445 -0.00038449 -0.17573 -9.5915E-05 545.7979486646782 48.12 0.36061 42.886 42.692 43.053 -5.2339 0.10511 -0.0015125 NaN 51.415 46 21 3 NaN NaN NaN NaN 0 NaN NaN 0 22037000 62905 3219 41866 42808 0.04065127988974382 TAAPTIGVL 9 Unmodified _TAAPTIGVL_ 0 0 0 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7531433105469 2 421.752736 841.490919 0.030404 1.2823E-05 0.34921 0.00014728 0.37961 0.0001601 421.7528008263852 62.921 0.32381 62.921 62.749 63.073 0 21 13 2 0 0 0 0.14602 1 35110 35110 28.487 3.813 1 1307200 62906 4542 41867 42809 73438 73438 0.06383284011531032 TAAPTIGVL 9 Unmodified _TAAPTIGVL_ 0 0 0 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 ENSG00000133935|ENST00000256319|ERG28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7530822753906 2 421.752736 841.490919 0.30436 0.00012836 0.09023 3.8055E-05 0.39459 0.00016642 421.7527538233253 63.402 0.28209 62.915 62.709 62.992 -0.48617 21 12 2 0 0 0 0.052168 1 34550 34550 44.407 6.2558 1 1233400 62907 4542 41867 42809 73439 73439 0.06383284011531032 TAAPVPTTL 9 Unmodified _TAAPVPTTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4927978515625 1 870.49311 869.485833 0.15554 0.00013539 0.18129 0.00015782 0.33683 0.00029321 870.4933995203374 50.365 0.3299 50.365 50.188 50.518 0 35 14 3 0 0 0 0.0090948 3 27709 27709;27736;27810 85.272 14.138 1 11192000 62908 16250 41868 42810 73440;73441;73442 73440 0.0458698014890615 TAAPVPTTL 9 Unmodified _TAAPVPTTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7508544921875 2 435.750193 869.485833 0.21491 9.3649E-05 0.22148 9.6511E-05 0.4364 0.00019016 435.75023156662013 50.36 0.3471 50.36 50.171 50.518 0 26 15 2 0 0 0 0.042911 1 27741 27741 48.346 7.8973 1 6108500 62909 16250 41868 42810 73443 73443 0.0458698014890615 TAAPVPTTL 9 Unmodified _TAAPVPTTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.4929809570312 1 870.49311 869.485833 0.69623 0.00060607 -0.87406 -0.00076086 -0.17782 -0.00015479 870.4928498962136 58.27 0.47625 52.195 51.962 52.439 -6.0745 46 25 2 0 0 0 0.0021556 2 37364 37241;37364 131.27 34.983 1 34166000 62910 16250 41868 42810 73444;73445 73445 0.0458698014890615 TAAPVPTTL 9 Unmodified _TAAPVPTTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7505798339844 2 435.750193 869.485833 0.98282 0.00042827 0.11484 5.0043E-05 1.0977 0.00047831 435.7502745727449 58.273 0.33986 52.198 52.031 52.371 -6.0745 26 17 2 0 0 0 0.00856 1 37355 37355 100.37 29.238 1 14968000 62911 16250 41868 42810 73446 73446 0.0458698014890615 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.5078125 1 896.50876 895.501483 0.070731 6.3411E-05 -0.65141 -0.00058399 -0.58068 -0.00052058 896.5081260079398 63.326 0.53682 63.326 63.053 63.59 0 80 26 4 0 0 0 0.015445 3 35427 35221;35323;35427 68.081 16.889 1 62921000 62912 4591 41869 42811 73447;73448;73449 73449 0.04955266665945146 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.758056640625 2 448.758018 895.501483 0.39398 0.0001768 -0.80034 -0.00035916 -0.40636 -0.00018236 448.757595931182 63.35 0.6783 63.35 63.031 63.709 0 101 32 4 0 0 0 0.013323 3 35224 35224;35324;35430 71.134 16.36 1 105840000 62913 4591 41869 42811 73450;73451;73452 73450 0.04955266665945146 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7573547363281 2 448.758018 895.501483 0.3691 0.00016564 -1.2509 -0.00056133 -0.88175 -0.00039569 448.75743549531444 63.828 0.26052 63.343 63.172 63.432 -0.48512 20 13 2 0 0 0 0.019303 1 34764 34764 64.236 28.192 1 3938600 62914 4591 41869 42811 73453 73453 0.04955266665945146 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.5086059570312 1 896.50876 895.501483 0.59912 0.00053712 -0.4993 -0.00044763 0.099817 8.9486E-05 896.5082826873415 70.454 0.50642 64.279 63.989 64.496 -6.1757 65 27 3 0 0 0 0.009483 2 46000 46000;46126 81.89 20.533 1 114150000 62915 4591 41869 42811 73454;73455 73454 0.04955266665945146 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.758544921875 2 448.758018 895.501483 1.091 0.00048957 -0.35393 -0.00015883 0.73703 0.00033075 448.7578109940868 70.43 0.57507 64.254 63.958 64.533 -6.1757 75 31 3 0 0 0 0.010818 2 46153 46027;46153 78.149 16.792 1 230830000 62916 4591 41869 42811 73456;73457 73457 0.04955266665945146 TAAPVVPEL 9 Unmodified _TAAPVVPEL_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.758018 895.501483 0.94096 0.00042226 -0.59958 -0.00026907 0.34138 0.0001532 448.7577534374942 63.458 0.28091 63.436 63.24 63.521 -0.021618 0.060095 0.00026961 NaN 71.134 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1662700 62917 4591 41869 42811 0.04955266665945146 TAAQCLEHY 9 Carbamidomethyl (C) _TAAQC(Carbamidomethyl (C))LEHY_ TAAQC(1)LEHY TAAQC(80)LEHY 0 1 0 ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L ENSG00000096401|ENST00000371477|CDC5L MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7433471679688 2 546.742573 1091.47059 0.6624 0.00036216 1.4115 0.0007717 2.0739 0.0011339 546.7430477446665 31.92 0.27294 28.224 28.105 28.378 -3.6958 22 14 2 0 0 0 0.010301 1 18140 18140 79.596 46.811 1 12875000 62918 1672 41870 42812 73458 73458 161 -0.0714825471061431 TAAQISYALF 10 Unmodified _TAAQISYALF_ 0 0 0 REV__nc|ENSG00000163399|P05023-2|ATP1A1 REV__nc|ENSG00000163399|P05023-2|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7880249023438 2 542.787307 1083.56006 0.16582 9.0004E-05 -0.1571 -8.5271E-05 0.0087199 4.7331E-06 542.7870420628368 40.013 0.19476 40.013 39.873 40.068 0 14 9 2 0 0 0 0.56348 1 21509 21509 13.042 0 1 2856200 + 62919 21760 41871 42813 73459 73459 0.021623232403953807 TAAQISYALF 10 Unmodified _TAAQISYALF_ 0 0 0 REV__nc|ENSG00000163399|P05023-2|ATP1A1 REV__nc|ENSG00000163399|P05023-2|ATP1A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.787307 1083.56006 0.16582 9.0004E-05 -0.1571 -8.5271E-05 0.0087199 4.7331E-06 542.7870420628368 40.013 0.19476 40.013 39.873 40.068 0 0 0 NaN 13.042 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2856200 + 62920 21760 41871 42813 0.021623232403953807 TAAQLLDTL 9 Unmodified _TAAQLLDTL_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2657470703125 2 473.266207 944.517862 0.034019 1.61E-05 0.17174 8.1277E-05 0.20575 9.7377E-05 473.2662672097484 71.745 0.33794 71.745 71.523 71.861 0 36 14 3 0 0 0 0.039985 1 39914 39914 49.933 20.851 1 2608200 62921 8934 41872 42814 73460 73460 0.04338347832049294 TAAQVEGIIY 10 Unmodified _TAAQVEGIIY_ 0 0 0 ENST00000518114.1_1_2:190619886-190627438:-|nuORF ENST00000518114.1_1_2:190619886-190627438:-|nuORF ENST00000518114.1_1_2:190619886-190627438:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7844848632812 2 532.784764 1063.55498 0.2893 0.00015413 -0.26191 -0.00013954 0.027382 1.4589E-05 532.7848994035851 31.258 0.22725 31.258 31.132 31.359 0 30 10 4 0 0 0 0.095786 1 16246 16246 47.594 1.8948 1 8176600 62922 14686 41873 42815 73461 73461 0.025740193778119647 TAAQVLIRF 9 Unmodified _TAAQVLIRF_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8056335449219 2 509.805834 1017.59712 0.42906 0.00021874 0.11804 6.0177E-05 0.5471 0.00027892 509.8057442674143 64.341 0.31853 63.856 63.696 64.014 -0.48512 19 14 2 0 0 0 0.05447 1 35123 35123 43.858 5.8843 1 919200 62923 10046 41874 42816 73462 73462 0.08902039576844345 TAAQVLIRF 9 Unmodified _TAAQVLIRF_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.8065795898438 2 509.805834 1017.59712 1.2289 0.00062648 0.027256 1.3895E-05 1.2561 0.00064038 509.8058307531587 63.876 0.50427 63.866 63.649 64.154 -0.010532 43 24 2 0 0 0 0.0086904 2 34908 34908;35013 107.19 21.915 1 37014000 62924 10046 41874 42816 73463;73464 73463 0.08902039576844345 TAARAWAL 8 Unmodified _TAARAWAL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.2435302734375 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 44.863 1 44.841 44.341 45.341 -0.022064 0 0 0 0.27899 1 24081 24081 65.235 20.828 1 62925 10723 41875 42817 73465 73465 0.03628952791405027 TAARAWAL 8 Unmodified _TAARAWAL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST;ENST00000477229.1_1_1:20987242-20987843:-|nuORF nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS AL20221201_MKP_PDAC_01 4 430.2429809570312 2 430.24287 858.471186 NaN NaN NaN NaN NaN NaN NaN 48.959 1 43.563 43.063 44.063 -5.3961 0 0 0 0.22104 1 30537 30537 81.89 33.544 1 62926 10723 41875 42817 73466 73466 0.03628952791405027 TAARIPAL 8 Unmodified _TAARIPAL_ 0 0 0 ENST00000372797.7_2_1:40505934-40506144:+|nuORF ENST00000372797.7_2_1:40505934-40506144:+|nuORF ENST00000372797.7_2_1:40505934-40506144:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7532348632812 2 406.75307 811.491587 0.59583 0.00024235 0.16649 6.7719E-05 0.76231 0.00031007 406.7529077901215 40.732 0.10508 40.429 40.356 40.461 -0.30304 6 4 2 0 0 0 0.63229 1 21558 21558 23.148 1.4018 1 1646900 62927 12391 41876 42818 73467 73467 0.07830123451208237 TAARVIDRF 9 Unmodified _TAARVIDRF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.5357971191406 3 350.201452 1047.58253 -0.034379 -1.204E-05 0.54602 0.00019122 0.51164 0.00017918 350.5359387878907 32.006 0.31586 31.877 31.699 32.015 -0.12915 32 12 4 0 0 0 0.024189 1 16641 16641 48.073 30.63 1 5733400 62928 10908 41877 42819 73468 73468 0.06063967428713113 TAARVIDRF 9 Unmodified _TAARVIDRF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2024536132812 3 350.201452 1047.58253 1.9928 0.00069789 -0.00019793 -6.9315E-08 1.9926 0.00069782 350.2014381741721 35.83 0.50499 31.637 31.394 31.899 -4.1928 89 31 4 0 0 0 0.13231 3 20738 20738;20873;21003 28.234 18.16 1 75108000 62929 10908 41877 42819 73469;73470;73471 73469 0.06063967428713113 TAARVIDRF 9 Unmodified _TAARVIDRF_ 0 0 0 ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF ENSG00000275700|ENST00000619387|AATF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.799560546875 2 524.79854 1047.58253 1.3481 0.00070749 0.42661 0.00022388 1.7747 0.00093138 524.7986824951538 35.814 0.42803 31.622 31.425 31.853 -4.1928 68 26 3 0 0 0 0.047714 2 20783 20783;20921 45.74 26.483 1 29304000 62930 10908 41877 42819 73472;73473 73472 0.06063967428713113 TAASAYSYY 9 Unmodified _TAASAYSYY_ 0 0 0 ENSG00000088766|ENST00000378863|CRLS1;nc|ENSG00000088766|Q9UJA2-2|CRLS1 ENSG00000088766|ENST00000378863|CRLS1 ENSG00000088766|ENST00000378863|CRLS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.4335327148438 1 996.430903 995.423627 0.32821 0.00032704 1.2787 0.0012741 1.6069 0.0016011 996.4336110925465 38.687 0.19282 38.687 38.577 38.77 0 11 8 2 0 0 0 0.14602 1 20686 20686 28.487 9.2299 1 485180 62931 1495 41878 42820 73474 73474 -0.07426790990098198 TAASLLDVF 9 Unmodified _TAASLLDVF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.5014038085938 1 936.503674 935.496398 0.19895 0.00018632 1.1387 0.0010664 1.3376 0.0012527 936.5041316744788 91.269 0.27091 91.269 91.125 91.396 0 26 16 2 0 0 0 0.23158 1 50445 50445 20.454 4.6064 1 359060 62932 1777 41879 42821 73475 73475 0.02606962803326951 TAASLLDVF 9 Unmodified _TAASLLDVF_ 0 0 0 nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 nc|ENSG00000100242|Q9UH99-3|SUN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5043334960938 1 936.503674 935.496398 0.36313 0.00034008 -0.51677 -0.00048396 -0.15364 -0.00014388 936.5034049426545 91.755 0.24773 91.274 91.169 91.417 -0.48092 30 16 2 0 0 0 0.070838 2 50112 50112;50214 39.957 18.211 1 1525600 62933 1777 41879 42821 73476;73477 73476 0.02606962803326951 TAASLLYV 8 Unmodified _TAASLLYV_ 0 0 0 REV__nc|ENSG00000179698|A6NE52-2|WDR97 REV__nc|ENSG00000179698|A6NE52-2|WDR97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4728393554688 1 837.471646 836.46437 0.10347 8.6657E-05 0.20717 0.0001735 0.31065 0.00026016 837.4718567754271 68.97 0.33898 68.97 68.764 69.103 0 24 14 2 0 0 0 0.6895 1 38457 38457 18.135 0 1 1453300 + 62934 23112 41880 42822 73478 73478 0.039595951201818025 TAASPTIAL 9 Unmodified _TAASPTIAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.4774780273438 1 844.47746 843.470183 0.39498 0.00033355 0.50069 0.00042283 0.89568 0.00075638 844.4778928855844 53.85 0.34555 53.85 53.705 54.051 0 40 15 3 0 0 0 0.0031966 2 29831 29831;29934 125.62 57.82 1 16915000 62935 8930 41881 42823 73479;73480 73479 0.04218693631844417 TAASPTIAL 9 Unmodified _TAASPTIAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7428588867188 2 422.742368 843.470183 0.45706 0.00019322 0.45569 0.00019264 0.91275 0.00038586 422.74260146583566 53.848 0.26307 53.848 53.748 54.011 0 21 11 2 0 0 0 0.087258 1 29863 29863 36.044 12.896 1 2901900 62936 8930 41881 42823 73481 73481 0.04218693631844417 TAASPTIAL 9 Unmodified _TAASPTIAL_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20221201_MKP_PDAC_01 4 844.4764404296875 1 844.47746 843.470183 1.0212 0.00086237 -0.68247 -0.00057633 0.33871 0.00028603 844.4769030473229 61.469 0.37254 55.322 55.136 55.508 -6.1478 31 18 2 0 0 0 0.0067112 2 39516 39516;39643 112.59 45.249 1 35354000 62937 8930 41881 42823 73482;73483 73482 0.04218693631844417 TAATIFFGAD 10 Unmodified _TAATIFFGAD_ 0 0 0 ENSG00000145309|ENST00000273936|CABS1 ENSG00000145309|ENST00000273936|CABS1 ENSG00000145309|ENST00000273936|CABS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.251708984375 2 507.250557 1012.48656 -0.025525 -1.2948E-05 0.21523 0.00010918 0.1897 9.6227E-05 507.25067404358475 35.308 0.9606 35.308 34.753 35.713 0 137 49 3 0 0 0 0.35903 1 18845 18845 24.021 0.87215 1 35312000 62938 5683 41882 42824 73484 73484 -0.019182252020527812 TAATLMNAY 9 Oxidation (M) _TAATLM(Oxidation (M))NAY_ TAATLM(1)NAY TAATLM(46)NAY 0 0 1 ENSG00000138160|ENST00000260731|KIF11 ENSG00000138160|ENST00000260731|KIF11 ENSG00000138160|ENST00000260731|KIF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.229248046875 2 486.228768 970.442982 -0.43702 -0.00021249 0.36951 0.00017966 -0.067516 -3.2828E-05 486.2288466021636 33.982 0.20389 33.982 33.841 34.044 0 17 9 3 0 0 0 0.047196 1 17855 17855 46.021 31.183 1 2671200 62939 5027 41883 42825 73485 73485 919 -0.04342157970836524 TAATPRLL 8 Unmodified _TAATPRLL_ 0 0 0 REV__ENSG00000104899|ENST00000221496|AMH REV__ENSG00000104899|ENST00000221496|AMH MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.7576904296875 2 421.758352 841.502152 0.33638 0.00014187 -0.40312 -0.00017002 -0.066745 -2.815E-05 421.7581266719093 25.071 0.35184 22.188 22.036 22.387 -2.8831 65 35 2 0 0 0 0.46494 2 13748 13635;13748 38.151 13.477 1 20815000 + 62940 18387 41884 42826 73486;73487 73487 0.07506106105654453 TAAVEFLLY 9 Unmodified _TAAVEFLLY_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7779541015625 2 513.778951 1025.54335 0.35708 0.00018346 -0.40282 -0.00020696 -0.045746 -2.3503E-05 513.7784736051121 90.888 0.25635 90.393 90.355 90.611 -0.49457 29 18 2 0 0 0 0.06187 1 49700 49700 42.095 11.87 1 985180 62941 5176 41885 42827 73488 73488 0.03159822354473363 TAAVEFLLY 9 Unmodified _TAAVEFLLY_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7791137695312 2 513.778951 1025.54335 0.78672 0.0004042 1.004 0.00051584 1.7907 0.00092004 513.7793489382909 99.47 0.24622 93.294 93.228 93.474 -6.1757 26 15 2 0 0 0 0.016184 1 66272 66272 67.344 25.249 1 16968000 62942 5176 41885 42827 73489 73489 0.03159822354473363 TAAVFKETF 9 Unmodified _TAAVFKETF_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2697448730469 2 507.26875 1012.52295 0.61818 0.00031358 -0.062463 -3.1686E-05 0.55571 0.0002819 507.2686504572265 47.98 0.19632 47.98 47.875 48.071 0 18 9 2 0 0 0 0.047788 1 26294 26294 45.7 15.063 1 4450000 62943 3443 41886 42828 73490 73490 0.017186516946594566 TAAVTSLFT 9 Unmodified _TAAVTSLFT_ 0 0 0 REV__nc|ENSG00000126903|P09131-2|SLC10A3 REV__nc|ENSG00000126903|P09131-2|SLC10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.4892578125 1 910.488024 909.480748 0.063067 5.7422E-05 0.48196 0.00043882 0.54502 0.00049624 910.4882840173764 68.414 0.33192 67.933 67.764 68.096 -0.48071 29 14 3 0 0 0 0.06187 1 37441 37441 42.095 0 1 3661200 + 62944 19567 41887 42829 73491 73491 0.02238676286287955 TACAPVSHY 9 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))APVSHY_ TAC(1)APVSHY TAC(71)APVSHY 0 1 0 ENSG00000164902|ENST00000297540|PHAX ENSG00000164902|ENST00000297540|PHAX ENSG00000164902|ENST00000297540|PHAX MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2274475097656 2 503.226559 1004.43857 0.0028193 1.4187E-06 0.51776 0.00026055 0.52058 0.00026197 503.22694543719933 25.306 0.3063 22.423 22.28 22.586 -2.8831 46 19 3 0 0 0 0.013323 1 13779 13779 71.134 34.627 1 14093000 62945 7261 41888 42830 73492 73492 713 -0.06347622393741403 TACDAVLERM 10 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))DAVLERM_ TAC(1)DAVLERM TAC(100)DAVLERM 0 1 0 ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 ENSG00000223501|ENST00000445902|VPS52 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2720336914062 2 583.270641 1164.52673 0.92338 0.00053858 2.1832 0.0012734 3.1066 0.001812 583.2702015775002 48.568 0.33872 43.172 42.98 43.318 -5.3961 38 20 2 0 0 0 0.0042881 2 30216 30216;30347 100.71 69.44 1 44753000 62946 10571 41889 42831 73493;73494 73493 943 -0.04895369865448629 TACDIQTHM 9 Carbamidomethyl (C),Oxidation (M) _TAC(Carbamidomethyl (C))DIQTHM(Oxidation (M))_ TAC(1)DIQTHM TACDIQTHM(1) TAC(96)DIQTHM TACDIQTHM(96) 0 1 1 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7265014648438 2 546.726066 1091.43758 0.47921 0.000262 -0.27564 -0.0001507 0.20357 0.00011129 546.7261836838593 17.944 0.38132 15.357 15.144 15.525 -2.5866 67 30 3 0 0 0 0.0082548 2 9440 9335;9440 96.367 38.645 1 4902700 62947 4694 41890 42832 73495;73496 73496 481 850 -0.1044820482495652 TACDIQTHM 9 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))DIQTHM_ TAC(1)DIQTHM TAC(96)DIQTHM 0 1 0 nc|ENSG00000135341|O43318-4|MAP3K7;nc|ENSG00000135341|O43318-3|MAP3K7;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 nc|ENSG00000135341|O43318-4|MAP3K7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2294921875 2 538.728609 1075.44266 0.69034 0.00037191 -0.2218 -0.00011949 0.46854 0.00025241 538.7287242702383 30.217 0.32214 26.72 26.592 26.915 -3.497 38 15 3 0 0 0 0.0082548 1 17015 17015 96.367 40.864 1 32274000 62948 4694 41890 42833 73497 73497 481 -0.09203900962324951 TACEFHSYCNA 11 Unmodified _TACEFHSYCNA_ 0 0 0 ENST00000294383.6_1_1:55533647-55533731:-|nuORF ENST00000294383.6_1_1:55533647-55533731:-|nuORF ENST00000294383.6_1_1:55533647-55533731:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8266906738281 3 415.826957 1244.45904 -0.038106 -1.5845E-05 0.38906 0.00016178 0.35095 0.00014593 415.8270872680207 37.367 0.36945 37.367 37.159 37.529 0 72 19 6 0 0 0 0.73115 1 19807 19807 0.45452 0 1 10720000 62949 11482 41891 42834 73498 73498 -0.15340819796233518 TACGFCFVEY 10 2 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))GFC(Carbamidomethyl (C))FVEY_ TAC(1)GFC(1)FVEY TAC(75)GFC(75)FVEY 0 2 0 nc|ENSG00000114503|P52298-2|NCBP2;ENSG00000114503|ENST00000321256|NCBP2;ENST00000463783.1_1_3:196666081-196669374:-|nuORF;ENST00000479647.1_1_3:196664263-196668636:-|nuORF;ENST00000468923.5_1_3:196664263-196669374:-|nuORF nc|ENSG00000114503|P52298-2|NCBP2 nc|ENSG00000114503|P52298-2|NCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.253173828125 2 627.251917 1252.48928 0.84602 0.00053066 0.014636 9.1802E-06 0.86065 0.00053985 627.2522091284914 79.977 0.39186 73.801 73.612 74.004 -6.1757 57 23 3 0 0 0 0.020813 1 52486 52486 74.929 55.672 1 45097000 62950 3043 41892 42835 73499 73499 311;312 -0.12686461131056603 TACMAFEL 8 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))MAFEL_ TAC(1)MAFEL TAC(47)MAFEL 0 1 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3;nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000096063|Q96SB4-4|SRPK1 ENSG00000135250|ENST00000393651|SRPK2 MSMS AL20221201_MKP_PDAC_01 4 471.7062377929688 2 471.706614 941.398675 NaN NaN NaN NaN NaN NaN NaN 77.809 1 71.633 71.133 72.133 -6.1757 0 0 0 0.44807 1 50907 50907 46.921 31.074 1 62951 4682;1667;9246 41893 42836 73500 73500 160 -0.0743688538866536 TACNRSATL 9 Unmodified _TACNRSATL_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7326049804688 2 468.732009 935.449465 1.1078 0.00051928 0.26157 0.00012261 1.3694 0.00064189 468.7321294718001 20.894 0.3196 18.201 18.019 18.339 -2.693 28 18 2 0 0 0 0.14 1 11093 11093 29.082 1.4528 1 3276200 + 62952 18678 41894 42837 73501 73501 -0.020842200194465477 TACPEYRW 8 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))PEYRW_ TAC(1)PEYRW TAC(44)PEYRW 0 1 0 REV__ENSG00000165899|ENST00000547103|OTOGL REV__ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7412109375 2 541.739834 1081.46511 1.055 0.00057151 -0.80535 -0.00043629 0.24961 0.00013522 541.7390472090397 37.052 0.42533 32.769 32.613 33.039 -4.2835 44 25 2 0 0 0 0.40602 1 21668 21668 43.858 7.7313 1 14008000 + 62953 22060 41895 42838 73502 73502 1046 -0.07235933502443004 TACPGRTYF 9 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))PGRTYF_ TAC(1)PGRTYF TAC(44)PGRTYF 0 1 0 nc|ENSG00000124207|P55060-3|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF nc|ENSG00000124207|P55060-3|CSE1L nc|ENSG00000124207|P55060-3|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7471313476562 2 536.747659 1071.48076 0.98381 0.00052806 -0.9093 -0.00048806 0.074508 3.9992E-05 536.74721128411 37.921 0.33284 33.552 33.4 33.733 -4.3689 34 19 2 0 0 0 0.05483 1 22271 22271 43.772 21.036 1 13974000 62954 16168 41896 42839 73503 73503 1013 -0.05211646985367224 TACPGRVPSM 10 Carbamidomethyl (C),Oxidation (M) _TAC(Carbamidomethyl (C))PGRVPSM(Oxidation (M))_ TAC(1)PGRVPSM TACPGRVPSM(1) TAC(82)PGRVPSM TACPGRVPSM(82) 0 1 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L ENSG00000124207|ENST00000262982|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2514038085938 2 546.252251 1090.48995 1.0428 0.00056962 -0.11369 -6.2105E-05 0.92909 0.00050752 546.2519245447825 20.219 0.48571 17.526 17.276 17.762 -2.693 56 31 2 0 0 0 0.013158 2 10770 10662;10770 81.915 62.658 1 7440300 62955 3762 41897 42840 73504;73505 73505 380 662 -0.051676216913392636 TACQVATAF 9 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))QVATAF_ TAC(1)QVATAF TAC(61)QVATAF 0 1 0 nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL nc|ENSG00000292339|O95671-3|ASMTL nc|ENSG00000292339|O95671-3|ASMTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2302551269531 2 484.728935 967.443317 1.1556 0.00056017 -0.94943 -0.00046022 0.2062 9.9952E-05 484.7283437667266 50.38 0.47055 44.841 44.565 45.036 -5.5391 55 30 3 0 0 0 0.022193 2 31501 31501;31630 61.357 33.729 1 25703000 62956 7834 41898 42841 73506;73507 73506 763 -0.04170738250979866 TACRCNPGF 9 2 Carbamidomethyl (C) _TAC(Carbamidomethyl (C))RC(Carbamidomethyl (C))NPGF_ TAC(1)RC(1)NPGF TAC(72)RC(72)NPGF 0 2 0 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5;ENST00000598500.1_1_19:14883058-14887568:-|nuORF;ENST00000599423.5_1_19:14879714-14887649:-|nuORF;ENST00000587535.3_1_19:14492251-14508118:+|nuORF;nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2 nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000127507|Q9UHX3-5|ADGRE2 nc|ENSG00000127507|Q9UHX3-5|ADGRE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2301635742188 2 541.728943 1081.44333 -0.17877 -9.6844E-05 -0.22196 -0.00012024 -0.40073 -0.00021709 541.728840172272 25.252 0.2217 22.369 22.309 22.531 -2.8831 17 12 2 0 0 0 0.013041 1 13848 13848 71.922 43.435 1 2798500 62957 3685;4013 41899 42842 73508 73508 364;365 -0.09413061522627686 TADDSNLNTA 10 Unmodified _TADDSNLNTA_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7211303710938 2 511.225268 1020.43598 0.40375 0.00020641 -0.062958 -3.2186E-05 0.34079 0.00017422 511.22560206084853 75.139 0.45322 75.139 74.89 75.343 0 64 25 4 0 0 0 0.67033 1 41713 41713 6.2058 0 1 1565600 62958 4903 41900 42843 73509 73509 -0.07341799317703135 TADFREQI 8 Unmodified _TADFREQI_ 0 0 0 ENSG00000006451|ENST00000005257|RALA;ENST00000546724.1_1_12:79187410-79187629:-|nuORF ENSG00000006451|ENST00000005257|RALA ENSG00000006451|ENST00000005257|RALA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2455139160156 2 490.245806 978.47706 NaN NaN NaN NaN NaN NaN NaN 34.525 1 34.525 34.025 35.025 0 0 0 0 0.85975 1 18195 18195 20.454 0.039092 1 62959 335 41901 42844 73510 73510 -0.013039934875678227 TADHNLLLY 9 Unmodified _TADHNLLLY_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2796630859375 2 530.277106 1058.53966 0.63551 0.00033699 -0.64453 -0.00034178 -0.0090265 -4.7865E-06 530.2766509890349 53.422 0.43169 53.422 53.195 53.627 0 61 19 4 0 0 0 0.03568 2 29538 29538;29645 52.268 12.311 1 84150000 62960 9188 41902 42845 73511;73512 73511 0.01273152580643 TADHNLLLY 9 Unmodified _TADHNLLLY_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.27685546875 2 530.277106 1058.53966 0.32534 0.00017252 -0.23855 -0.0001265 0.086788 4.6022E-05 530.2767913351494 53.899 0.32111 53.433 53.265 53.586 -0.46664 47 15 4 0 0 0 0.010818 2 29232 29127;29232 78.149 29.804 1 17663000 62961 9188 41902 42845 73513;73514 73514 0.01273152580643 TADHNLLLY 9 Unmodified _TADHNLLLY_ 0 0 0 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 ENSG00000183751|ENST00000568546|TBL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.278564453125 2 530.277106 1058.53966 0.87241 0.00046262 2.0704 0.0010979 2.9428 0.0015605 530.2786840946479 59.664 0.52505 53.549 53.219 53.745 -6.1147 66 29 3 0 0 0 0.0090948 1 38176 38176 85.272 23.915 1 167120000 62962 9188 41902 42845 73515 73515 0.01273152580643 TADHRIYSY 9 Unmodified _TADHRIYSY_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2;FAF2|p.N72D|1|0.15|ENSG00000113194|chr5:176486436-176486436|A/G|missense_variant;ENST00000429974.1_1_10:93526536-93526818:-|nuORF ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8493347167969 3 375.848967 1124.52507 -0.3314 -0.00012455 0.8655 0.0003253 0.53411 0.00020074 375.84913620418973 23.446 0.29493 23.446 23.347 23.641 0 25 14 2 0 0 0 0.35911 1 11940 11940 14.405 10.529 1 2168100 62963 2945 41903 42846 73516 73516 -0.03220919567525016 TADHRIYSY 9 Unmodified _TADHRIYSY_ 0 0 0 ENSG00000113194|ENST00000261942|FAF2;FAF2|p.N72D|1|0.15|ENSG00000113194|chr5:176486436-176486436|A/G|missense_variant;ENST00000429974.1_1_10:93526536-93526818:-|nuORF ENSG00000113194|ENST00000261942|FAF2 ENSG00000113194|ENST00000261942|FAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2691650390625 2 563.269813 1124.52507 -0.078168 -4.403E-05 3.51 0.0019771 3.4319 0.0019331 563.2695278165744 23.502 0.25576 23.502 23.367 23.623 0 26 12 3 0 0 0 0.094905 1 11953 11953 23.79 14.407 1 824670 62964 2945 41903 42846 73517 73517 -0.03220919567525016 TADLEAIII 9 Unmodified _TADLEAIII_ 0 0 0 REV__nc|ENSG00000185615|Q13087-2|PDIA2 REV__nc|ENSG00000185615|Q13087-2|PDIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7755432128906 2 479.776408 957.538263 0.55286 0.00026525 0.173 8.3001E-05 0.72586 0.00034825 479.77641234496343 90.479 0.27036 89.985 89.848 90.118 -0.49457 21 12 2 0 0 0 0.28047 1 49452 49452 18.135 0 1 643420 + 62965 23512 41904 42847 73518 73518 0.057795184918632 TADLPHHR 8 Unmodified _TADLPHHR_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.4845581054688 1 946.485339 945.478063 -0.40537 -0.00038367 -4.4638 -0.0042249 -4.8692 -0.0046086 946.4793781710589 65.461 0.69282 65.461 65.117 65.81 0 58 28 3 0 0 0 0.42423 1 36528 36528 42.095 9.3089 1 5354700 + 62966 22785 41905 42848 73519 73519 0.003142656719887782 TADNIHYWL 9 Unmodified _TADNIHYWL_ 0 0 0 nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3 nc|ENSG00000170289|Q9NQW8-2|CNGB3 nc|ENSG00000170289|Q9NQW8-2|CNGB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2784423828125 2 566.774731 1131.53491 1.1608 0.00065793 1.1049 0.00062623 2.2657 0.0012842 567.2774647714822 79.725 0.27908 79.235 79.075 79.354 -0.48932 29 12 3 0 0 0 0.41742 1 43670 43670 11.64 0.52583 1 1824100 62967 7968 41906 42849 73520 73520 -0.025597315621553207 TADQVIASF 9 Unmodified _TADQVIASF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.2438659667969 2 476.242732 950.470912 0.27658 0.00013172 1.3039 0.00062099 1.5805 0.0007527 476.24333486510426 58.574 0.33466 58.574 58.414 58.748 0 36 13 3 0 0 0 0.039985 2 32592 32592;32695 49.933 24.534 1 10768000 62968 4211 41907 42850 73521;73522 73521 -0.006305117190890996 TADQVIASF 9 Unmodified _TADQVIASF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 951.4779052734375 1 951.478188 950.470912 -0.25929 -0.00024671 1.489 0.0014167 1.2297 0.00117 951.4797914082961 58.574 0.23549 58.574 58.441 58.677 0 16 9 2 0 0 0 0.1773 1 32601 32601 25.399 7.253 1 1107900 62969 4211 41907 42850 73523 73523 -0.006305117190890996 TADQVIASF 9 Unmodified _TADQVIASF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4;ENST00000497637.5_1_19:39218501-39220069:+|nuORF ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20221201_MKP_PDAC_01 4 476.2424621582031 2 476.242732 950.470912 NaN NaN NaN NaN NaN NaN NaN 66.585 1 60.41 59.91 60.91 -6.1757 0 0 0 0.053277 1 43312 43312 56.177 20.05 1 62970 4211 41907 42850 73524 73524 -0.006305117190890996 TADSGYYVL 9 Unmodified _TADSGYYVL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1;nc|ENSG00000179403|Q6PCB0-2|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.4598999023438 1 988.462204 987.454927 -0.30229 -0.00029881 -0.29844 -0.000295 -0.60073 -0.0005938 988.461781146566 56.34 0.33299 56.34 56.162 56.495 0 36 15 3 0 0 0 0.016184 2 31285 31285;31392 67.344 37.119 1 6184200 62971 8834 41908 42851 73525;73526 73525 -0.039302179559967954 TADSGYYVL 9 Unmodified _TADSGYYVL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1;nc|ENSG00000179403|Q6PCB0-2|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7350158691406 2 494.73474 987.454927 NaN NaN NaN NaN NaN NaN NaN 56.343 1 56.343 55.843 56.843 0 0 0 0 0.096036 1 31337 31337 44.407 27.465 1 62972 8834 41908 42851 73527 73527 -0.039302179559967954 TADSGYYVL 9 Unmodified _TADSGYYVL_ 0 0 0 ENSG00000179403|ENST00000476993|VWA1;nc|ENSG00000179403|Q6PCB0-2|VWA1 ENSG00000179403|ENST00000476993|VWA1 ENSG00000179403|ENST00000476993|VWA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 988.4650268554688 1 988.462204 987.454927 1.4077 0.0013914 -0.73426 -0.00072579 0.67339 0.00066562 988.4613192628264 64.31 0.34514 58.135 57.935 58.28 -6.1757 28 17 2 0 0 0 0.019303 2 41590 41590;41727 64.236 38.837 1 8664300 62973 8834 41908 42851 73528;73529 73528 -0.039302179559967954 TADSTIFKF 9 Unmodified _TADSTIFKF_ 0 0 0 ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2659912109375 2 515.266207 1028.51786 0.46192 0.00023801 -0.54475 -0.00028069 -0.082835 -4.2682E-05 515.2658255100122 62.019 0.25325 61.531 61.407 61.66 -0.48764 23 11 3 0 0 0 0.012668 1 33780 33780 72.968 38.866 1 2960700 62974 13264 41909 42852 73530 73530 0.004743478320506256 TADVVLIEPYH 11 Unmodified _TADVVLIEPYH_ 0 0 0 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5561828613281 3 419.555561 1255.64485 0.74678 0.00031332 2.4196 0.0010152 3.1664 0.0013285 419.55645214597126 57.928 0.29618 57.862 57.614 57.91 -0.066036 29 14 3 0 0 0 0.68427 1 31547 31547 2.6312 0.13275 1 1755100 + 62975 17885 41910 42853 73531 73531 0.027256489863702882 TAEDSEDEDE 10 Unmodified _TAEDSEDEDE_ 0 0 0 ENSG00000164252|ENST00000312916|AGGF1 ENSG00000164252|ENST00000312916|AGGF1 ENSG00000164252|ENST00000312916|AGGF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.1987915039062 2 570.19657 1138.37859 0.26788 0.00015275 2.4781 0.001413 2.7459 0.0015657 570.1978289446455 64.954 0.30791 64.954 64.809 65.117 0 26 14 2 0 0 0 0.69377 1 36218 36218 3.5965 0.60125 1 2226000 62976 7168 41911 42854 73532 73532 -0.1850673110459411 TAEDVEPYG 9 Unmodified _TAEDVEPYG_ 0 0 0 ENST00000436996.1_1_22:28318168-28318243:+|nuORF ENST00000436996.1_1_22:28318168-28318243:+|nuORF ENST00000436996.1_1_22:28318168-28318243:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7139282226562 2 490.714005 979.413456 0.37689 0.00018495 0.096674 4.7439E-05 0.47357 0.00023239 490.7139014875651 27.759 0.34085 24.723 24.541 24.882 -3.0365 26 17 2 0 0 0 0.070838 1 15369 15369 39.957 18.211 1 12534000 62977 13339 41912 42855 73533 73533 -0.07707398715319869 TAEEAVAVY 9 Unmodified _TAEEAVAVY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4617309570312 1 952.462204 951.454927 -0.33434 -0.00031845 0.41777 0.00039791 0.08343 7.9464E-05 952.4628598451004 40.078 0.24009 40.078 39.952 40.192 0 21 11 2 0 0 0 0.012148 2 21476 21476;21583 74.423 35.725 1 5108000 62978 8403 41913 42856 73534;73535 73534 -0.022742179560054865 TAEEAVAVY 9 Unmodified _TAEEAVAVY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7347106933594 2 476.73474 951.454927 0.17398 8.2941E-05 0.21825 0.00010405 0.39223 0.00018699 476.73470862724895 40.078 0.28442 40.078 39.952 40.236 0 29 13 3 0 0 0 0.010877 1 21508 21508 77.984 41.94 1 6541100 62979 8403 41913 42856 73536 73536 -0.022742179560054865 TAEEAVAVY 9 Unmodified _TAEEAVAVY_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20221201_MKP_PDAC_01 4 476.735107421875 2 476.73474 951.454927 NaN NaN NaN NaN NaN NaN NaN 47 1 41.92 41.42 42.42 -5.0805 0 0 0 0.050352 1 29123 29123 57.471 26.835 1 62980 8403 41913 42856 73537 73537 -0.022742179560054865 TAEEEEDEEY 10 Unmodified _TAEEEEDEEY_ 0 0 0 ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000261456|ENST00000568584|TUBB8 ENSG00000261456|ENST00000568584|TUBB8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2278442382812 2 622.22787 1242.44119 NaN NaN NaN NaN NaN NaN NaN 51.893 1 51.893 51.393 52.393 0 0 0 0 0.98914 1 28691 28691 1.8442 0.19162 1 62981 8299 41914 42857 73538 73538 -0.1703358503639265 TAEGAEPQWL 10 Unmodified _TAEGAEPQWL_ 0 0 0 REV__ENSG00000133246|ENST00000423345|PRAM1 REV__ENSG00000133246|ENST00000423345|PRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2650756835938 2 551.264196 1100.51384 0.41261 0.00022746 0.83263 0.000459 1.2452 0.00068646 551.2646970087926 63.242 0.24342 62.756 62.642 62.885 -0.48617 19 10 2 0 0 0 0.40136 1 34473 34473 21.537 8.4945 1 1716600 + 62982 19916 41915 42858 73539 73539 -0.03239741661673179 TAEGDECASAP 11 Unmodified _TAEGDECASAP_ 0 0 0 REV__ENSG00000174776|ENST00000682715|WDR49 REV__ENSG00000174776|ENST00000682715|WDR49 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.279541015625 2 525.705854 1049.39715 1.194 0.00062769 1.2972 0.00068193 2.4912 0.0013096 525.7065698763413 55.252 0.33243 49.331 49.175 49.507 -5.9211 36 20 2 0 0 0 0.29698 1 35162 35162 5.2969 1.3525 1 34317000 + 62983 22816 41916 42859 73540 73540 -0.12556847943733374 TAEGEINNVQW 11 Unmodified _TAEGEINNVQW_ 0 0 0 ENSG00000136485|ENST00000614556|DCAF7;nc|ENSG00000136485|P61962-2|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 ENSG00000136485|ENST00000614556|DCAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7966918945312 2 630.796392 1259.57823 0.41941 0.00026456 2.028 0.0012793 2.4474 0.0015438 630.7982780561736 53.316 0.20565 53.316 53.195 53.401 0 14 8 2 0 0 0 0.11933 1 29541 29541 40.239 29.44 1 2290100 62984 4825 41917 42860 73541 73541 -0.04117586575534915 TAEGQATLERL 11 Unmodified _TAEGQATLERL_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8145141601562 2 594.814584 1187.61462 NaN NaN NaN NaN NaN NaN NaN 38.519 1 38.519 38.019 39.019 0 0 0 0 0.67158 1 20581 20581 27.088 14.046 1 62985 1121 41918 42861 73542 73542 0.028312903212054152 TAEGQATLERL 11 Unmodified _TAEGQATLERL_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8131103515625 2 594.814584 1187.61462 0.345 0.00020521 -0.71484 -0.0004252 -0.36983 -0.00021998 594.8141885544733 43.137 0.34529 38.373 38.18 38.525 -4.7648 51 23 3 0 0 0 9.7417E-09 2 26207 26062;26207 139.32 83.819 1 32359000 62986 1121 41918 42861 73543;73544 73544 0.028312903212054152 TAEGQTIVY 9 Unmodified _TAEGQTIVY_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2491455078125 2 491.248015 980.481476 0.48946 0.00024044 0.59015 0.00028991 1.0796 0.00053035 491.24829997544555 38.916 0.4771 38.916 38.725 39.202 0 72 21 4 0 0 0 0.024882 2 20753 20753;20875 58.679 22.635 1 47713000 62987 255 41919 42862 73545;73546 73545 -0.009545290646656213 TAEGQTIVY 9 Unmodified _TAEGQTIVY_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.4893798828125 1 981.488753 980.481476 0.39756 0.0003902 0.17158 0.0001684 0.56914 0.0005586 981.4890104192575 38.923 0.34816 38.923 38.747 39.096 0 34 15 3 0 0 0 0.010818 2 20776 20776;20887 78.149 36.31 1 8808400 62988 255 41919 42862 73547;73548 73547 -0.009545290646656213 TAEGQTIVY 9 Unmodified _TAEGQTIVY_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2489929199219 2 491.248015 980.481476 0.34533 0.00016964 0.44236 0.00021731 0.78769 0.00038695 491.24811357797046 45.241 0.5742 40.286 39.95 40.524 -4.9549 94 38 3 0 0 0 0.039985 3 27558 27558;27697;27838 49.933 21.446 1 106970000 62989 255 41919 42862 73549;73550;73551 73549 -0.009545290646656213 TAEGQTIVY 9 Unmodified _TAEGQTIVY_ 0 0 0 nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA nc|ENSG00000001167|P23511-2|NFYA nc|ENSG00000001167|P23511-2|NFYA MULTI-MSMS AL20221201_MKP_PDAC_01 4 981.4896240234375 1 981.488753 980.481476 0.30217 0.00029657 0.40854 0.00040097 0.7107 0.00069755 981.4888925676595 45.225 0.43404 40.27 40.03 40.464 -4.9549 54 29 2 0 0 0 0.0082661 3 27599 27599;27731;27872 92.491 40.558 1 29679000 62990 255 41919 42862 73552;73553;73554 73552 -0.009545290646656213 TAEGTVFHF 9 Unmodified _TAEGTVFHF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7424621582031 2 504.742899 1007.47125 -0.056024 -2.8277E-05 0.13685 6.9072E-05 0.080823 4.0795E-05 504.74268417836004 56.037 0.4691 56.037 55.853 56.322 0 66 24 4 0 0 0 0.010877 1 31123 31123 77.984 48.903 1 36664000 62991 5299 41920 42863 73555 73555 -0.032190919992331146 TAEGTVFHF 9 Unmodified _TAEGTVFHF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.243896484375 2 504.742899 1007.47125 -1.1163 -0.00056346 0.22645 0.0001143 -0.88987 -0.00044916 504.74302805274846 56.531 0.26328 56.045 55.923 56.186 -0.48554 41 23 2 0 0 0 0.038285 1 30671 30671 50.855 29.108 1 25943000 62992 5299 41920 42863 73556 73556 -0.032190919992331146 TAEGTVFHF 9 Unmodified _TAEGTVFHF_ 0 0 0 ENSG00000141076|ENST00000314423|UTP4;nc|ENSG00000141076|Q969X6-2|UTP4;nc|ENSG00000141076|Q969X6-3|UTP4 ENSG00000141076|ENST00000314423|UTP4 ENSG00000141076|ENST00000314423|UTP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7431030273438 2 504.742899 1007.47125 0.9578 0.00048344 -3.4522 -0.0017425 -2.4944 -0.001259 504.74100047477145 61.786 0.45473 55.611 55.404 55.859 -6.1757 53 23 3 0 0 0 0.016184 2 39728 39728;39860 67.344 33.241 1 106250000 62993 5299 41920 42863 73557;73558 73557 -0.032190919992331146 TAELLHTEHI 10 Unmodified _TAELLHTEHI_ 0 0 0 ENSG00000089057|ENST00000338244|SLC23A2;ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF ENSG00000089057|ENST00000338244|SLC23A2 ENSG00000089057|ENST00000338244|SLC23A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.305419921875 2 582.306395 1162.59824 0.65858 0.00038349 -2.1098 -0.0012285 -1.4512 -0.00084503 582.3051201132076 46.405 0.22911 46.405 46.294 46.523 0 14 10 2 0 0 0 0.60623 1 25371 25371 10.824 0.75 1 1295900 62994 1512 41921 42864 73559 73559 0.023442091551032718 TAELVIPEL 9 Unmodified _TAELVIPEL_ 0 0 0 ENSG00000120217|ENST00000381577|CD274;ENST00000492923.1_1_9:5462961-5465689:+|nuORF;nc|ENSG00000120217|Q9NZQ7-2|CD274 ENSG00000120217|ENST00000381577|CD274 ENSG00000120217|ENST00000381577|CD274 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7843933105469 2 492.784233 983.553913 0.16319 8.0416E-05 0.89398 0.00044054 1.0572 0.00052096 492.7846425551546 86.174 0.31856 86.174 86.02 86.339 0 26 15 2 0 0 0 0.16226 1 47709 47709 26.884 15.243 1 592270 62995 3500 41922 42865 73560 73560 0.06147805008902196 TAENCQSCNCT 11 Unmodified _TAENCQSCNCT_ 0 0 0 ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B ENSG00000117983|ENST00000529681|MUC5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8019714355469 3 391.803824 1172.38964 NaN NaN NaN NaN NaN NaN NaN 34.132 1 34.132 33.632 34.632 0 0 0 0 0.94181 1 17954 17954 1.2148 0.021489 1 62996 3344 41923 42866 73561 73561 -0.18965646807305347 TAERGLIVY 9 Unmodified _TAERGLIVY_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2880859375 2 511.287474 1020.5604 0.52081 0.00026628 -0.40277 -0.00020593 0.11804 6.0353E-05 511.28724576794906 45.811 0.44336 45.811 45.625 46.068 0 74 21 5 0 0 0 0.040683 2 24935 24935;25051 49.554 26.818 1 322870000 62997 1918 41924 42867 73562;73563 73562 0.050937429602981865 TAERGLIVY 9 Unmodified _TAERGLIVY_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2876892089844 2 511.287474 1020.5604 0.088717 4.536E-05 0.23965 0.00012253 0.32836 0.00016789 511.2875723296167 46.073 0.33118 45.736 45.57 45.901 -0.33664 51 16 4 0 0 0 0.062454 2 24591 24591;24700 41.956 22.699 1 40795000 62998 1918 41924 42867 73564;73565 73564 0.050937429602981865 TAERGLIVY 9 Unmodified _TAERGLIVY_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2874755859375 2 511.287474 1020.5604 NaN NaN NaN NaN NaN NaN NaN 45.771 1 45.743 45.243 46.243 -0.028011 0 0 0 0.19623 1 24602 24602 31.268 14.155 1 62999 1918 41924 42867 73566 73566 0.050937429602981865 TAERGLIVY 9 Unmodified _TAERGLIVY_ 0 0 0 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 ENSG00000101146|ENST00000395841|RAE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2880859375 2 511.287474 1020.5604 0.84687 0.00043299 0.011649 5.9561E-06 0.85852 0.00043895 511.2874975768924 51.022 0.51933 45.373 45.103 45.622 -5.649 102 31 4 0 0 0 0.033587 3 31924 31924;32053;32177 53.404 24.322 1 391420000 63000 1918 41924 42867 73567;73568;73569 73567 0.050937429602981865 TAEVALANL 9 Unmodified _TAEVALANL_ 0 0 0 ENSG00000151746|ENST00000652176|BICD1;nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 ENSG00000151746|ENST00000652176|BICD1;nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MSMS AL20221201_MKP_PDAC_01 4 451.25439453125 2 451.2531 900.491647 NaN NaN NaN NaN NaN NaN NaN 63.98 1 57.804 57.304 58.304 -6.1757 0 0 0 0.029091 1 41416 41416 67.344 3.1075 1 63001 6144;9434 41925 42868 73570 73570 0.03742078660570769 TAFDNIANNDF 11 Unmodified _TAFDNIANNDF_ 0 0 0 REV__MUC5B|p.D1031N|1|0.21|ENSG00000117983|chr11:1236958-1236958|G/A|missense_variant REV__MUC5B|p.D1031N|1|0.21|ENSG00000117983|chr11:1236958-1236958|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2756958007812 2 621.275292 1240.53603 0.56188 0.00034908 -2.7685 -0.00172 -2.2067 -0.0013709 621.2746275085636 52.339 0.21375 51.906 51.789 52.003 -0.43367 20 10 3 0 0 0 0.33405 1 28259 28259 24.991 7.8781 1 4179500 + 63002 29475 41926 42869 73571 73571 -0.07461561983905085 TAFDVAEKY 9 Unmodified _TAFDVAEKY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2560424804688 2 522.25584 1042.49713 -0.011196 -5.8472E-06 -0.21852 -0.00011412 -0.22972 -0.00011997 522.2556938835861 41.679 0.49284 41.679 41.499 41.992 0 73 25 4 0 0 0 0.0032147 1 22558 22558 125.53 91.427 1 310540000 63003 16049 41927 42870 73572 73572 -0.022422425476179342 TAFDVAEKY 9 Unmodified _TAFDVAEKY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.256103515625 2 522.25584 1042.49713 NaN NaN NaN NaN NaN NaN NaN 41.808 1 41.806 41.306 42.306 -0.0017929 0 0 0 0.14754 1 22362 22362 37.075 22.236 1 63004 16049 41927 42870 73573 73573 -0.022422425476179342 TAFDVAEKY 9 Unmodified _TAFDVAEKY_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2562866210938 2 522.25584 1042.49713 1.3426 0.00070118 -0.78015 -0.00040744 0.56245 0.00029374 522.2555310194444 47.421 0.62484 42.187 41.89 42.515 -5.2339 117 39 4 0 0 0 0.021948 1 29381 29381 61.602 38.866 1 300900000 63005 16049 41927 42870 73574 73574 -0.022422425476179342 TAFEGNLLDSY 11 Unmodified _TAFEGNLLDSY_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.286376953125 2 615.287868 1228.56118 0.41668 0.00025638 -0.020181 -1.2417E-05 0.3965 0.00024396 615.2878001204913 69.526 0.38673 69.526 69.326 69.713 0 54 17 4 0 0 0 0.33469 2 38695 38695;38793 38.176 30.886 1 6437200 63006 5016 41928 42871 73575;73576 73575 -0.043955071813115865 TAFEGNLLDSY 11 Unmodified _TAFEGNLLDSY_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.2877197265625 2 615.287868 1228.56118 0.18095 0.00011133 -0.52162 -0.00032095 -0.34068 -0.00020961 615.2878163128205 70.125 0.28217 69.646 69.494 69.777 -0.47903 26 16 2 0 0 0 0.42951 1 38334 38334 31.268 23.659 1 3645400 63007 5016 41928 42871 73577 73577 -0.043955071813115865 TAFEGNLLDSY 11 Unmodified _TAFEGNLLDSY_ 0 0 0 ENST00000491031.5_1_2:25016788-25038721:+|nuORF;nc|ENSG00000138092|Q9BU64-2|CENPO;ENSG00000138092|ENST00000380834|CENPO ENST00000491031.5_1_2:25016788-25038721:+|nuORF ENST00000491031.5_1_2:25016788-25038721:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.2875366210938 2 615.287868 1228.56118 0.58218 0.00035821 0.2338 0.00014386 0.81598 0.00050206 615.2881327388473 78.084 0.38906 71.909 71.652 72.041 -6.1757 39 21 2 0 0 0 0.014741 2 51130 51001;51130 86.332 62.311 1 17436000 63008 5016 41928 42871 73578;73579 73579 -0.043955071813115865 TAFEHHEIF 9 Unmodified _TAFEHHEIF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5131530761719 3 377.513696 1129.51926 0.061552 2.3237E-05 0.28104 0.0001061 0.34259 0.00012933 377.51375310038475 39.737 0.35733 39.737 39.575 39.932 0 55 17 4 0 0 0 0.038285 2 21275 21275;21382 38.176 22.927 1 22239000 63009 3999 41929 42872 73580;73581 73580 -0.04032018079192312 TAFEHHEIF 9 Unmodified _TAFEHHEIF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7676391601562 2 565.766906 1129.51926 0.30295 0.0001714 -0.38682 -0.00021885 -0.08387 -4.7451E-05 565.7667040237388 39.727 0.39085 39.727 39.639 40.03 0 49 19 4 0 0 0 0.008678 1 21305 21305 88.904 65.755 1 11009000 63010 3999 41929 42872 73582 73582 -0.04032018079192312 TAFEHHEIF 9 Unmodified _TAFEHHEIF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.514404296875 3 377.513696 1129.51926 0.19534 7.3742E-05 -0.14425 -5.4457E-05 0.051083 1.9284E-05 377.5136675534532 39.997 0.29148 39.7 39.512 39.804 -0.29716 26 13 3 0 0 0 0.095405 1 21109 21109 38.176 18.814 1 4345300 63011 3999 41929 42872 73583 73583 -0.04032018079192312 TAFEHHEIF 9 Unmodified _TAFEHHEIF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5146484375 3 377.513696 1129.51926 1.0944 0.00041314 -1.0398 -0.00039252 0.054612 2.0617E-05 377.5133679193314 44.341 0.37257 39.489 39.343 39.715 -4.852 65 27 3 0 0 0 0.14602 1 26988 26988 32.786 10.049 1 37179000 63012 3999 41929 42872 73584 73584 -0.04032018079192312 TAFEHHEIF 9 Unmodified _TAFEHHEIF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7651977539062 2 565.766906 1129.51926 0.75958 0.00042974 -4.265 -0.002413 -3.5055 -0.0019833 565.764359648287 44.345 0.20306 39.493 39.394 39.597 -4.852 25 15 2 0 0 0 0.0082661 1 27023 27023 92.491 64.005 1 14491000 63013 3999 41929 42872 73585 73585 -0.04032018079192312 TAFGHPQAY 9 Unmodified _TAFGHPQAY_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2347412109375 2 496.235242 990.45593 -0.341 -0.00016922 0.90571 0.00044945 0.56471 0.00028023 496.23562303765556 28.912 0.2815 28.912 28.781 29.063 0 53 13 5 0 0 0 0.023481 2 14915 14915;15013 60.074 41.939 1 61985000 63014 4205 41930 42873 73586;73587 73586 -0.03967958796442872 TAFGHPQAY 9 Unmodified _TAFGHPQAY_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2358093261719 2 496.235242 990.45593 0.64529 0.00032022 -0.15684 -7.7831E-05 0.48845 0.00024239 496.2351559300443 28.901 0.27118 28.839 28.67 28.941 -0.062159 27 11 3 0 0 0 0.0090524 1 14905 14905 85.642 65.188 1 21974000 63015 4205 41930 42873 73588 73588 -0.03967958796442872 TAFGHPQAY 9 Unmodified _TAFGHPQAY_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.2350158691406 2 496.235242 990.45593 0.26726 0.00013262 -0.2066 -0.00010252 0.060655 3.0099E-05 496.23505449375483 28.735 0.17013 28.764 28.651 28.821 0.029564 10 6 2 0 0 0 0.12424 1 14964 14964 30.637 22.043 1 2316500 63016 4205 41930 42873 73589 73589 -0.03967958796442872 TAFGHPQAY 9 Unmodified _TAFGHPQAY_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2362365722656 2 496.235242 990.45593 0.98055 0.00048658 0.26974 0.00013385 1.2503 0.00062044 496.2353455500334 32.484 0.47198 28.627 28.432 28.904 -3.8562 63 25 3 0 0 0 0.0086722 2 18579 18454;18579 88.954 63.555 1 156690000 63017 4205 41930 42873 73590;73591 73591 -0.03967958796442872 TAFIDDEFI 9 Unmodified _TAFIDDEFI_ 0 0 0 REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7584838867188 2 535.755672 1069.49679 0.39121 0.00020959 0.52724 0.00028247 0.91846 0.00049207 535.7565043681359 66.26 0.24409 66.26 66.153 66.397 0 16 10 3 0 0 0 0.49272 1 36982 36982 7.9102 0 1 822230 + 63018 17971 41931 42874 73592 73592 -0.03517662267472588 TAFIDDEFI 9 Unmodified _TAFIDDEFI_ 0 0 0 REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.755672 1069.49679 0.39121 0.00020959 0.52724 0.00028247 0.91846 0.00049207 535.7565043681359 66.26 0.24409 66.26 66.153 66.397 0 0 0 NaN 7.9102 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 822230 + 63019 17971 41931 42874 -0.03517662267472588 TAFLHHLA 8 Unmodified _TAFLHHLA_ 0 0 0 ENSG00000159459|ENST00000290650|UBR1;nc|ENSG00000159459|Q8IWV7-2|UBR1 ENSG00000159459|ENST00000290650|UBR1 ENSG00000159459|ENST00000290650|UBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2487487792969 2 455.250695 908.486836 NaN NaN NaN NaN NaN NaN NaN 15.762 1 15.762 15.262 16.262 0 0 0 0 0.97348 1 7623 7623 5.7604 1.0044 1 63020 6658 41932 42875 73593 73593 0.028932393084801333 TAFLHPEEF 9 Unmodified _TAFLHPEEF_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1;ENSG00000142552|ENST00000270645|RCN3 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7642211914062 2 545.763832 1089.51311 -0.44889 -0.00024499 0.41816 0.00022822 -0.030726 -1.6769E-05 545.7640568299153 55.358 0.42214 55.358 55.17 55.592 0 61 18 5 0 0 0 0.009483 2 30696 30696;30807 81.89 66.642 1 34311000 63021 710 41933 42876 73594;73595 73594 -0.02806536310708907 TAFLHPEEF 9 Unmodified _TAFLHPEEF_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1;ENSG00000142552|ENST00000270645|RCN3 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7640991210938 2 545.763832 1089.51311 -0.48473 -0.00026455 -0.38101 -0.00020794 -0.86574 -0.00047249 545.7635109346041 55.952 0.34187 55.474 55.3 55.642 -0.47798 35 16 3 0 0 0 0.0082661 1 30328 30328 92.491 72.038 1 11076000 63022 710 41933 42876 73596 73596 -0.02806536310708907 TAFLHPEEY 9 Unmodified _TAFLHPEEY_ 0 0 0 nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-10|CALU;nc|ENSG00000128595|O43852-6|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU nc|ENSG00000128595|O43852-15|CALU nc|ENSG00000128595|O43852-15|CALU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.759765625 2 553.761289 1105.50803 NaN NaN NaN NaN NaN NaN NaN 44.875 1 44.875 44.375 45.375 0 0 0 0 0.032808 1 24435 24435 65.235 47.089 1 63023 4075 41934 42877 73597 73597 -0.04050840173317738 TAFLPNKDVY 10 Unmodified _TAFLPNKDVY_ 0 0 0 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 ENSG00000174718|ENST00000312561|RESF1 MSMS AL20221201_MKP_PDAC_01 4 584.3051147460938 2 584.305864 1166.59717 NaN NaN NaN NaN NaN NaN NaN 54.413 1 48.548 48.048 49.048 -5.8653 0 0 0 0.43781 1 34514 34514 33.445 16.332 1 63024 8450 41935 42878 73598 73598 0.020539947861834662 TAFLVQLTEL 10 Unmodified _TAFLVQLTEL_ 0 0 0 nc|ENSG00000170185|Q8NB14-2|USP38;ENSG00000170185|ENST00000307017|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7272338867188 2 567.823889 1133.63323 0.61161 0.00034728 0.30122 0.00017104 0.91282 0.00051832 567.8239685303894 89.831 0.30649 89.33 89.172 89.479 -0.50171 24 15 2 0 0 0 0.23952 1 49155 49155 2.9952 1.151 1 565150 63025 7956 41936 42879 73599 73599 0.07175451963030355 TAFMEAAVY 9 Oxidation (M) _TAFM(Oxidation (M))EAAVY_ TAFM(1)EAAVY TAFM(48)EAAVY 0 0 1 nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL nc|ENSG00000135828|Q05823-2|RNASEL nc|ENSG00000135828|Q05823-2|RNASEL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7316589355469 2 509.731143 1017.44773 0.70587 0.00035981 1.1415 0.00058184 1.8473 0.00094165 509.7308906262211 47.872 0.36366 47.872 47.707 48.071 0 37 17 3 0 0 0 0.042911 1 26216 26216 48.346 25.197 1 3963900 63026 4744 41937 42880 73600 73600 861 -0.06029273828062287 TAFNGELEDY 10 Unmodified _TAFNGELEDY_ 0 0 0 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 ENSG00000073050|ENST00000262887|XRCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7513427734375 2 579.751118 1157.48768 0.021845 1.2665E-05 -0.19358 -0.00011223 -0.17173 -9.9563E-05 579.7507705407854 52.232 0.3159 52.232 52.06 52.376 0 19 13 2 0 0 0 0.1942 1 28909 28909 34.402 21.87 1 3319500 63027 1099 41938 42881 73601 73601 -0.08476055623805223 TAFPDGRSSF 10 Unmodified _TAFPDGRSSF_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7570190429688 2 542.756538 1083.49852 0.23886 0.00012964 -0.70587 -0.00038311 -0.46701 -0.00025347 542.7560507096549 39.563 0.64777 39.563 39.362 40.01 0 87 31 3 0 0 0 0.20195 2 21279 21279;21394 33.445 17.598 1 21585000 63028 2721 41939 42882 73602;73603 73602 -0.0398860845884883 TAFPDGRSSF 10 Unmodified _TAFPDGRSSF_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7572021484375 2 542.756538 1083.49852 0.040885 2.2191E-05 1.087 0.00058996 1.1279 0.00061215 542.7570432873393 40.03 0.6834 39.733 39.471 40.154 -0.29716 84 32 3 0 0 0 0.1899 3 21179 21071;21179;21286 34.932 21.026 1 24990000 63029 2721 41939 42882 73604;73605;73606 73605 -0.0398860845884883 TAFPDGRSSF 10 Unmodified _TAFPDGRSSF_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7582397460938 2 542.756538 1083.49852 0.31496 0.00017095 1.4227 0.0007722 1.7377 0.00094315 542.7571767569573 39.578 0.30851 39.589 39.509 39.817 0.011452 22 14 2 0 0 0 0.53722 1 21131 21131 14.405 2.7651 1 896460 63030 2721 41939 42882 73607 73607 -0.0398860845884883 TAFPDGRSSF 10 Unmodified _TAFPDGRSSF_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7556762695312 2 542.756538 1083.49852 0.2808 0.00015241 -0.25457 -0.00013817 0.026231 1.4237E-05 542.7559110625381 45.197 0.88564 40.345 39.815 40.701 -4.852 146 61 3 0 0 0 0.022967 3 27902 27614;27754;27902 72.968 50.232 1 122630000 63031 2721 41939 42882 73608;73609;73610 73610 -0.0398860845884883 TAFPGTDKL 9 Unmodified _TAFPGTDKL_ 0 0 0 nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2535705566406 2 475.2531 948.491647 0.82916 0.00039406 -0.14418 -6.852E-05 0.68498 0.00032554 475.2529942883905 42.516 0.4166 42.516 42.339 42.756 0 51 20 3 0 0 0 0.0086209 2 23084 22979;23084 89.401 41.652 1 14424000 63032 7369 41940 42883 73611;73612 73612 0.01534078660574778 TAFPGTDKL 9 Unmodified _TAFPGTDKL_ 0 0 0 nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2530822753906 2 475.2531 948.491647 NaN NaN NaN NaN NaN NaN NaN 42.778 1 42.467 41.967 42.967 -0.31039 0 0 0 0.038824 1 22734 22734 62.573 18.714 1 63033 7369 41940 42883 73613 73613 0.01534078660574778 TAFPGTDKL 9 Unmodified _TAFPGTDKL_ 0 0 0 nc|ENSG00000165655|Q96F45-3|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;ENSG00000165655|ENST00000372524|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 nc|ENSG00000165655|Q96F45-3|ZNF503 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2534790039062 2 475.2531 948.491647 0.66317 0.00031518 0.66152 0.00031439 1.3247 0.00062957 475.25330587578156 48.159 0.44858 42.925 42.657 43.106 -5.2339 50 26 2 0 0 0 0.025842 1 29904 29904 57.722 21.595 1 35274000 63034 7369 41940 42883 73614 73614 0.01534078660574778 TAFPGTGGF 9 Unmodified _TAFPGTGGF_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 854.4082641601562 1 854.404295 853.397018 -0.05392 -4.6069E-05 -0.038532 -3.2922E-05 -0.092451 -7.8991E-05 854.4039657052838 57.323 0.29597 56.833 56.75 57.046 -0.48974 19 13 2 0 0 0 0.16226 1 31114 31114 26.884 5.137 1 1096600 63035 10662 41941 42884 73615 73615 -0.035544350907457556 TAFRCGLQF 9 Unmodified _TAFRCGLQF_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7632446289062 2 521.760569 1041.50659 0.63076 0.00032911 3.6257 0.0018918 4.2565 0.0022209 521.76241840667 74.682 0.239 74.206 74.087 74.326 -0.47588 17 9 2 0 0 0 0.30562 1 40890 40890 16.942 1.0951 1 379890 63036 15906 41942 42885 73616 73616 -0.012507527430898335 TAFRYLAQY 9 Unmodified _TAFRYLAQY_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7933959960938 2 566.792924 1131.57129 0.81569 0.00046232 -0.14239 -8.0705E-05 0.6733 0.00038162 566.7927278689504 52.276 0.24189 52.217 52.067 52.309 -0.058914 27 11 4 0 0 0 0.0089732 1 28302 28302 86.332 51.93 1 4612700 63037 1638 41943 42886 73617 73617 0.01077145334556917 TAFSEGSVIAY 11 Unmodified _TAFSEGSVIAY_ 0 0 0 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.78076171875 2 572.779679 1143.5448 NaN NaN NaN NaN NaN NaN NaN 59.15 1 59.15 58.65 59.65 0 0 0 0 0.76159 1 32949 32949 13.906 6.6168 1 63038 6006 41944 42887 73618 73618 -0.021225883474244256 TAFSTVVGF 9 Unmodified _TAFSTVVGF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4766235351562 1 928.47746 927.470183 0.66868 0.00062085 -1.2978 -0.001205 -0.62911 -0.00058411 928.4760596892546 75.16 0.43959 74.682 74.405 74.844 -0.47714 39 19 3 0 0 0 0.016184 1 41130 41130 67.344 31.3 1 6503100 63039 12680 41945 42888 73619 73619 0.003546936318684857 TAFSTVVGF 9 Unmodified _TAFSTVVGF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2449340820312 2 464.742368 927.470183 0.61952 0.00028792 -0.75284 -0.00034988 -0.13332 -6.1958E-05 464.74185146455557 75.209 0.23833 74.732 74.582 74.821 -0.47714 16 10 2 0 0 0 0.39863 1 41150 41150 12.532 6.1774 1 1737000 63040 12680 41945 42888 73620 73620 0.003546936318684857 TAFSTVVGF 9 Unmodified _TAFSTVVGF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 928.4783325195312 1 928.47746 927.470183 0.54949 0.00051019 0.54285 0.00050402 1.0923 0.0010142 928.4777255230515 74.602 0.35324 74.648 74.481 74.834 0.045959 38 15 3 0 0 0 0.0094915 2 41176 41076;41176 81.864 45.82 1 6231500 63041 12680 41945 42888 73621;73622 73622 0.003546936318684857 TAFSTVVGF 9 Unmodified _TAFSTVVGF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7422180175781 2 464.742368 927.470183 0.31192 0.00014496 -0.0057495 -2.672E-06 0.30617 0.00014229 464.7423305738577 74.564 0.27144 74.61 74.522 74.793 0.045959 19 11 2 0 0 0 0.28047 1 41117 41117 18.135 8.7875 1 2503800 63042 12680 41945 42888 73623 73623 0.003546936318684857 TAFSTVVGF 9 Unmodified _TAFSTVVGF_ 0 0 0 ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF ENST00000392750.6_2_3:167437948-167437999:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.478759765625 1 928.47746 927.470183 0.75356 0.00069966 0.12504 0.0001161 0.8786 0.00081576 928.477198371511 82.842 0.58482 76.666 76.42 77.005 -6.1757 71 32 3 0 0 0 0.016184 3 54591 54318;54455;54591 67.344 34.323 1 39514000 63043 12680 41945 42888 73624;73625;73626 73626 0.003546936318684857 TAFTLAHIHY 10 Unmodified _TAFTLAHIHY_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8736877441406 3 391.873224 1172.59784 0.59888 0.00023469 0.40266 0.00015779 1.0015 0.00039248 391.8732913629015 52.295 0.23565 51.862 51.749 51.985 -0.43367 28 11 3 0 0 0 0.17714 1 28235 28235 36.506 24.266 1 4139600 63044 5002 41946 42889 73627 73627 0.01844834225903469 TAFTLAHIHY 10 Unmodified _TAFTLAHIHY_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8736572265625 3 391.873224 1172.59784 0.20012 7.8423E-05 0.79656 0.00031215 0.99668 0.00039057 391.8734869452184 51.987 0.27535 51.928 51.772 52.047 -0.058918 38 12 4 0 0 0 0.25982 1 28131 28131 29.841 15.435 1 19618000 63045 5002 41946 42889 73628 73628 0.01844834225903469 TAFTLAHIHY 10 Unmodified _TAFTLAHIHY_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3088989257812 2 587.306198 1172.59784 0.50179 0.00029471 2.891 0.0016979 3.3928 0.0019926 587.3086032147194 51.993 0.21184 51.934 51.835 52.047 -0.058918 20 9 3 0 0 0 0.038363 1 28143 28143 57.471 37.018 1 4030400 63046 5002 41946 42889 73629 73629 0.01844834225903469 TAFVLCTTYL 10 Unmodified _TAFVLCTTYL_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.29150390625 2 566.291368 1130.56818 0.51942 0.00029414 -0.31932 -0.00018083 0.2001 0.00011331 566.2910792264336 98.208 0.2206 98.015 97.909 98.13 -0.19321 18 7 3 0 0 0 0.67459 1 53648 53648 5.7319 0.50118 1 873040 63047 3276 41947 42890 73630 73630 0.00812134165516909 TAGAKLLF 8 Unmodified _TAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MSMS AL20221201_MKP_PDAC_01 4 410.7488098144531 2 410.749996 819.485439 NaN NaN NaN NaN NaN NaN NaN 58.024 1 51.996 51.496 52.496 -6.0275 0 0 0 0.41481 1 37156 37156 52.268 18.166 1 63048 8006 41948 42891 73631 73631 0.06847605219718389 TAGASFVWF 9 Unmodified _TAGASFVWF_ 0 0 0 REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7155151367188 2 493.242535 984.470518 -0.30361 -0.00014975 -0.0419 -2.0667E-05 -0.34551 -0.00017042 493.242580015196 24.459 0.243 24.459 24.329 24.572 0 19 11 2 0 0 0 0.209 1 12435 12435 7.2892 1.5288 1 1121600 + 63049 19276 41949 42892 73632 73632 -0.022338866482755293 TAGASLIGSDR 11 Unmodified _TAGASLIGSDR_ 0 0 0 ENST00000552139.1_1_12:117513108-117536217:-|nuORF ENST00000552139.1_1_12:117513108-117536217:-|nuORF ENST00000552139.1_1_12:117513108-117536217:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7075805664062 2 524.275095 1046.53564 NaN NaN NaN NaN NaN NaN NaN 23.132 1 23.132 22.632 23.632 0 0 0 0 0.93613 1 11784 11784 5.2969 1.3525 1 63050 15175 41950 42893 73633 73633 0.01423063086917864 TAGAVTQCY 9 Carbamidomethyl (C) _TAGAVTQC(Carbamidomethyl (C))Y_ TAGAVTQC(1)Y TAGAVTQC(100)Y 0 1 0 ENSG00000105640|ENST00000222247|RPL18A ENSG00000105640|ENST00000222247|RPL18A ENSG00000105640|ENST00000222247|RPL18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7181091308594 2 485.718567 969.422581 0.91412 0.00044401 -0.3862 -0.00018758 0.52793 0.00025642 485.718534406554 31.052 0.29504 27.53 27.366 27.661 -3.5218 17 13 2 0 0 0 0.0088174 1 17551 17551 103.75 65.774 1 29106000 63051 2343 41951 42894 73634 73634 231 -0.06335328630643744 TAGAVYTY 8 Unmodified _TAGAVYTY_ 0 0 0 ENSG00000142546|ENST00000596358|NOSIP;ENST00000593345.1_1_19:50063189-50083776:-|nuORF;ENST00000601340.5_1_19:50061444-50083809:-|nuORF;ENST00000598820.5_1_19:50061979-50083776:-|nuORF ENSG00000142546|ENST00000596358|NOSIP ENSG00000142546|ENST00000596358|NOSIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 845.4037475585938 1 845.40396 844.396684 0.46496 0.00039308 0.13233 0.00011187 0.59729 0.00050495 845.4038952964376 41.221 0.25429 36.614 36.467 36.722 -4.6079 21 15 2 0 0 0 0.07972 1 24655 24655 106.85 50.304 1 7099500 63052 5426 41952 42895 73635 73635 -0.031738548106091 TAGDFQEIY 9 Unmodified _TAGDFQEIY_ 0 0 0 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 ENSG00000156017|ENST00000376834|CARNMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.237060546875 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 51.348 1 51.348 50.848 51.848 0 0 0 0 0.08978 1 28353 28353 46.021 6.0636 1 63053 6424 41953 42896 73636 73636 -0.058791194443074346 TAGDIAHYY 9 Unmodified _TAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.733642578125 2 505.732532 1009.45051 0.23045 0.00011655 0.03646 1.8439E-05 0.26691 0.00013499 505.7325069534131 35.648 0.27945 35.648 35.496 35.776 0 33 13 3 0 0 0 0.031062 2 18813 18813;18917 54.774 33.902 1 15999000 63054 5288 41954 42897 73637;73638 73637 -0.05383682378908361 TAGDIAHYY 9 Unmodified _TAGDIAHYY_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7334594726562 2 505.732532 1009.45051 0.52946 0.00026777 0.4947 0.00025019 1.0242 0.00051795 505.7329319762336 40.487 0.40328 35.958 35.742 36.145 -4.5294 52 24 3 0 0 0 0.019303 2 24099 24099;24239 64.236 39.245 1 22315000 63055 5288 41954 42897 73639;73640 73639 -0.05383682378908361 TAGDIPVQY 9 Unmodified _TAGDIPVQY_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 963.4805908203125 1 963.478188 962.470912 0.36895 0.00035548 -0.78227 -0.0007537 -0.41332 -0.00039822 963.4782451830243 46.628 0.17391 46.628 46.544 46.718 0 10 7 2 0 0 0 0.10734 1 25474 25474 32.305 15.363 1 858630 63056 2536 41955 42898 73641 73641 -0.01182511719082413 TAGDIPVQY 9 Unmodified _TAGDIPVQY_ 0 0 0 nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 nc|ENSG00000107959|Q5JRX3-3|PITRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2431335449219 2 482.242732 962.470912 0.4808 0.00023186 -0.14912 -7.1913E-05 0.33168 0.00015995 482.2426771155237 46.653 0.2613 46.653 46.501 46.762 0 15 11 2 0 0 0 0.070838 1 25522 25522 39.957 10.876 1 1612600 63057 2536 41955 42898 73642 73642 -0.01182511719082413 TAGEMVFVY 9 Oxidation (M) _TAGEM(Oxidation (M))VFVY_ TAGEM(1)VFVY TAGEM(51)VFVY 0 0 1 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000525661.5_1_11:13427176-13461653:-|nuORF;ENST00000525864.5_1_11:13427176-13484721:-|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7386474609375 2 516.738968 1031.46338 -0.050944 -2.6325E-05 0.45398 0.00023459 0.40303 0.00020826 516.7386439234642 56.289 0.47157 56.289 56.093 56.564 0 59 21 3 0 0 0 0.038285 2 31284 31284;31393 50.855 20.63 1 7172000 63058 5973 41956 42899 73643;73644 73643 1066 -0.05108987311018609 TAGEMVFVY 9 Oxidation (M) _TAGEM(Oxidation (M))VFVY_ TAGEM(1)VFVY TAGEM(48)VFVY 0 0 1 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000525661.5_1_11:13427176-13461653:-|nuORF;ENST00000525864.5_1_11:13427176-13484721:-|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2413330078125 2 516.738968 1031.46338 1.3357 0.00069023 1.3272 0.0006858 2.6629 0.001376 516.739174307405 63.971 0.46997 57.796 57.506 57.976 -6.1757 42 25 2 0 0 0 0.042911 1 41366 41366 48.346 19.859 1 10162000 63059 5973 41956 42899 73645 73645 1066 -0.05108987311018609 TAGESFIVY 9 Unmodified _TAGESFIVY_ 0 0 0 ENST00000475946.5_1_6:7181423-7181483:+|nuORF;ENST00000379938.6_3_6:7181423-7182124:+|nuORF ENST00000475946.5_1_6:7181423-7181483:+|nuORF ENST00000475946.5_1_6:7181423-7181483:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7448425292969 2 493.745108 985.475663 0.15882 7.8419E-05 -0.22442 -0.0001108 -0.065591 -3.2385E-05 493.7451044619239 63.208 0.33059 63.208 63.031 63.361 0 32 13 3 0 0 0 0.2001 1 35314 35314 23.148 13.801 1 3753200 63060 12581 41957 42900 73646 73646 -0.017656275763442864 TAGFVLTY 8 Unmodified _TAGFVLTY_ 0 0 0 ENSG00000167700|ENST00000301327|MFSD3;ENST00000526749.1_1_8:145735004-145735891:+|nuORF;ENST00000528047.5_1_8:145734716-145735997:+|nuORF ENSG00000167700|ENST00000301327|MFSD3 ENSG00000167700|ENST00000301327|MFSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 871.4572143554688 1 871.455996 870.448719 -0.29723 -0.00025902 1.7198 0.0014987 1.4226 0.0012397 871.457683505849 68.77 0.21495 68.289 68.161 68.376 -0.48071 13 9 2 0 0 0 0.63229 1 37594 37594 23.148 3.7094 1 921000 63061 7659 41958 42901 73647 73647 0.008313086031193961 TAGGTTLIL 9 Unmodified _TAGGTTLIL_ 0 0 0 nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3;ENST00000465379.1_1_2:174774671-174778005:-|nuORF;nc|ENSG00000172845|Q02447-4|SP3;nc|ENSG00000172845|Q02447-3|SP3 nc|ENSG00000172845|Q02447-5|SP3 nc|ENSG00000172845|Q02447-5|SP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.4930419921875 1 846.49311 845.485833 -0.10461 -8.855E-05 0.88434 0.00074859 0.77973 0.00066004 846.4940420524175 61.956 0.27346 61.956 61.798 62.072 0 22 11 2 0 0 0 0.026094 2 34486 34486;34590 57.471 13.613 1 2964800 63062 8263 41959 42902 73648;73649 73648 0.056909801489041456 TAGLPQQNKVL 11 Unmodified _TAGLPQQNKVL_ 0 0 0 REV__nc|ENSG00000082126|Q96JB8-2|MPP4 REV__nc|ENSG00000082126|Q96JB8-2|MPP4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.7739868164062 2 584.837862 1167.66117 0.85461 0.00049981 0.236 0.00013802 1.0906 0.00063783 584.8379520327392 52.597 0.44408 46.863 46.635 47.079 -5.7345 63 24 3 0 0 0 0.29817 1 33296 33296 8.1555 0.54658 1 116220000 + 63063 17701 41960 42903 73650 73650 0.08404774943142002 TAGMYCAAL 9 Unmodified _TAGMYCAAL_ 0 0 0 ENSG00000169194|ENST00000304506|IL13 ENSG00000169194|ENST00000304506|IL13 ENSG00000169194|ENST00000304506|IL13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7566223144531 2 450.701331 899.38811 0.78853 0.00035539 2.1064 0.00094934 2.8949 0.0013047 450.70208872624465 53.85 0.19834 53.85 53.77 53.968 0 11 8 2 0 0 0 0.20528 1 29855 29855 8.5933 8.5933 1 878950 63064 7846 41961 42904 73651 73651 -0.06560868043106893 TAGPGHHG 8 Unmodified _TAGPGHHG_ 0 0 0 REV__ENST00000324941.4_1_7:73086172-73086286:+|nuORF REV__ENST00000324941.4_1_7:73086172-73086286:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1725463867188 2 367.172444 732.330336 NaN NaN NaN NaN NaN NaN NaN 15.64 1 15.64 15.14 16.14 0 0 0 0 0.97444 1 7551 7551 0.79363 0 1 + 63065 25543 41962 42905 73652 73652 -0.04653625861999444 TAGPTTHQF 9 Unmodified _TAGPTTHQF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant;MUC16|p.R1787Qfs*36|1|0.12|ENSG00000181143|chr19:8975766-8975781|GCTGGACTCTGTCCTT/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2313232421875 2 480.232699 958.450845 -0.13701 -6.5798E-05 -1.3705 -0.00065814 -1.5075 -0.00072393 480.2325641418478 22.825 0.22727 22.825 22.694 22.921 0 15 12 2 0 0 0 0.012668 1 11627 11627 72.968 33.011 1 1198000 63066 8954 41963 42906 73653 73653 -0.03004262659055712 TAGPTTHQF 9 Unmodified _TAGPTTHQF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant;MUC16|p.R1787Qfs*36|1|0.12|ENSG00000181143|chr19:8975766-8975781|GCTGGACTCTGTCCTT/-|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 480.268798828125 2 480.232699 958.450845 -0.052887 -2.5398E-05 -0.018295 -8.7856E-06 -0.071181 -3.4183E-05 480.23303652669904 25.567 0.18019 22.684 22.568 22.748 -2.8831 12 9 2 0 0 0 0.07631 1 14011 14011 24.991 7.8781 1 2775400 63067 8954 41963 42906 73654 73654 -0.03004262659055712 TAGRFTQWY 9 Unmodified _TAGRFTQWY_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA;ENST00000562209.1_1_16:88713507-88717421:-|nuORF;ENST00000561972.1_1_16:88714439-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2758178710938 2 565.274898 1128.53524 NaN NaN NaN NaN NaN NaN NaN 49.256 1 49.212 48.712 49.712 -0.04369 0 0 0 0.041018 1 26607 26607 61.602 43.456 1 63068 734 41964 42907 73655 73655 -0.02388311842287294 TAHAFVMIF 9 Oxidation (M) _TAHAFVM(Oxidation (M))IF_ TAHAFVM(1)IF TAHAFVM(48)IF 0 0 1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7657470703125 2 526.76532 1051.51609 0.63977 0.00033701 -0.37596 -0.00019804 0.26381 0.00013897 526.7655261107249 66.92 0.28578 66.938 66.837 67.123 0.018028 19 13 2 0 0 0 0.042911 1 36728 36728 48.346 25.197 1 2747000 63069 10157 41965 42908 73656 73656 1655 -0.007609844575654279 TAHALDECLMD 11 Unmodified _TAHALDECLMD_ 0 0 0 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 REV__nc|ENSG00000163808|Q9NS87-4|KIF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7599487304688 2 609.760106 1217.50566 0.58484 0.00035661 -1.2241 -0.0007464 -0.63925 -0.00038979 609.7594944598571 36.54 0.32281 36.54 36.409 36.732 0 40 15 3 0 0 0 0.58219 1 19382 19382 12.241 6.0349 1 3357400 + 63070 21816 41966 42909 73657 73657 -0.09439379964965156 TAHCNAFA 8 Unmodified _TAHCNAFA_ 0 0 0 ENST00000592895.5_1_19:1985822-1986326:-|nuORF ENST00000592895.5_1_19:1985822-1986326:-|nuORF ENST00000592895.5_1_19:1985822-1986326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.6812744140625 2 417.681788 833.349022 0.717 0.00029948 -1.082 -0.00045192 -0.36496 -0.00015244 417.68091252234933 74.467 0.39194 73.992 73.741 74.133 -0.47588 37 16 3 0 0 0 0.80975 1 40828 40828 0.79363 0 1 1238700 63071 15725 41967 42910 73658 73658 -0.07431832282463802 TAHDDRGIRF 10 Unmodified _TAHDDRGIRF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5354919433594 3 396.535383 1186.58432 -0.37848 -0.00015008 -0.15114 -5.9932E-05 -0.52962 -0.00021001 396.5355029941516 23.705 0.32189 23.705 23.51 23.832 0 45 16 4 0 0 0 0.095786 1 12054 12054 35.08 24.014 1 6073200 63072 1555 41968 42911 73659 73659 -0.0015102355337148765 TAHDDRGIRF 10 Unmodified _TAHDDRGIRF_ 0 0 0 ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF ENSG00000090372|ENST00000263280|STRN4 ENSG00000090372|ENST00000263280|STRN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5355834960938 3 396.535383 1186.58432 0.03528 1.399E-05 1.1479 0.00045517 1.1832 0.00046916 396.535760373753 25.509 0.55666 22.626 22.3 22.856 -2.8831 70 23 4 0 0 0 0.10406 2 13977 13871;13977 33.821 26.344 1 39818000 63073 1555 41968 42911 73660;73661 73661 -0.0015102355337148765 TAHEKIVQF 9 Unmodified _TAHEKIVQF_ 0 0 0 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.1988830566406 3 358.197708 1071.57129 1.6881 0.00060466 -0.36787 -0.00013177 1.3202 0.00047289 358.1975150299234 35.704 0.47628 31.512 31.218 31.694 -4.1928 65 29 3 0 0 0 0.46162 1 20578 20578 9.544 1.935 1 31506000 63074 1368 41969 42912 73662 73662 0.03837145334568959 TAHEPPLLY 9 Unmodified _TAHEPPLLY_ 0 0 0 nc|ENSG00000100299|P15289-2|ARSA;nc|ENSG00000100299|P15289|ARSA;ENSG00000100299|ENST00000216124|ARSA nc|ENSG00000100299|P15289-2|ARSA nc|ENSG00000100299|P15289-2|ARSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.773193359375 2 520.7742 1039.53385 0.15775 8.2152E-05 -1.0464 -0.00054493 -0.88864 -0.00046278 520.7739206514347 48.304 0.38274 48.304 48.051 48.433 0 30 18 2 0 0 0 0.070838 1 26451 26451 39.957 18.211 1 5197600 63075 1788 41970 42913 73663 73663 0.015660540689623303 TAHKMYGQMF 10 Unmodified _TAHKMYGQMF_ 0 0 0 REV__ENSG00000110245|ENST00000227667|APOC3 REV__ENSG00000110245|ENST00000227667|APOC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.8014526367188 2 607.278269 1212.54198 0.19523 0.00011856 -0.37554 -0.00022806 -0.18031 -0.0001095 607.2782126703011 53.185 0.24747 53.185 53.08 53.327 0 27 10 3 0 0 0 0.69064 1 29404 29404 3.9444 0.94915 1 4247300 + 63076 18700 41971 42914 73664 73664 -0.055784582775913805 TAHKMYGQMF 10 Unmodified _TAHKMYGQMF_ 0 0 0 REV__ENSG00000110245|ENST00000227667|APOC3 REV__ENSG00000110245|ENST00000227667|APOC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.8014526367188 2 607.278269 1212.54198 0.19523 0.00011856 -0.37554 -0.00022806 -0.18031 -0.0001095 607.2782126703011 53.185 0.24747 53.185 53.08 53.327 0 27 10 3 0 0 0 0.23862 1 29404 29404 3.9444 3.9444 1 4247300 + 63077 18700 41971 42914 73665 73665 -0.055784582775913805 TAHKMYGQMF 10 Unmodified _TAHKMYGQMF_ 0 0 0 REV__ENSG00000110245|ENST00000227667|APOC3 REV__ENSG00000110245|ENST00000227667|APOC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2783203125 2 607.278269 1212.54198 0.43188 0.00026227 0.8487 0.0005154 1.2806 0.00077767 607.278371463045 53.815 0.08073 53.348 53.306 53.387 -0.46664 6 3 2 0 0 0 0.62068 1 29145 29145 10.074 1.3285 1 1380000 + 63078 18700 41971 42914 73666 73666 -0.055784582775913805 TAHNIIQDF 9 Unmodified _TAHNIIQDF_ 0 0 0 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.766845703125 2 529.766906 1057.51926 0.69028 0.00036569 2.6108 0.0013831 3.3011 0.0017488 529.7674384630385 51.52 0.41085 51.52 51.254 51.665 0 46 18 3 0 0 0 0.08691 1 28440 28440 36.127 19.014 1 12861000 63079 9732 41972 42915 73667 73667 -0.00720018079186957 TAHNIIQDF 9 Unmodified _TAHNIIQDF_ 0 0 0 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 ENSG00000189143|ENST00000340958|CLDN4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 529.766906 1057.51926 0.31697 0.00016792 3.4261 0.001815 3.743 0.0019829 529.7663978219143 52.017 0.11873 51.583 51.512 51.631 -0.43367 0.031615 0.00071997 NaN 36.127 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1535000 63080 9732 41972 42915 -0.00720018079186957 TAHPFVPA 8 Unmodified _TAHPFVPA_ 0 0 0 ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2243041992188 2 420.224146 838.433738 0.68744 0.00028888 -0.21093 -8.8639E-05 0.47651 0.00020024 420.2241024728797 49.479 0.31596 49.087 48.922 49.238 -0.3923 27 15 2 0 0 0 0.5284 1 26562 26562 32.117 5.7757 1 10184000 63081 13977 41973 42916 73668 73668 0.00805861525805085 TAHPFVPA 8 Unmodified _TAHPFVPA_ 0 0 0 ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2249755859375 2 420.224146 838.433738 0.30112 0.00012654 0.74287 0.00031217 1.044 0.00043871 420.2242125705638 49.129 0.24863 49.085 48.927 49.175 -0.04369 16 11 2 0 0 0 0.50586 1 26542 26542 34.187 6.0141 1 940560 63082 13977 41973 42916 73669 73669 0.00805861525805085 TAHPFVPA 8 Unmodified _TAHPFVPA_ 0 0 0 ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF ENST00000476236.1_1_2:114386183-114390642:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 839.4417724609375 1 839.441015 838.433738 0.87343 0.00073319 0.29527 0.00024786 1.1687 0.00098106 839.4409806402103 54.865 0.50297 49 48.746 49.249 -5.8653 67 30 3 0 0 0 0.44122 1 34722 34722 40.449 6.2612 1 43413000 63083 13977 41973 42916 73670 73670 0.00805861525805085 TAHRKKVV 8 Unmodified _TAHRKKVV_ 0 0 0 ENST00000426582.2_1_13:77502247-77502832:+|nuORF ENST00000426582.2_1_13:77502247-77502832:+|nuORF ENST00000426582.2_1_13:77502247-77502832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.799072265625 2 469.798343 937.582134 0.3067 0.00014408 1.2013 0.00056436 1.508 0.00070845 469.79880525806436 48.205 0.21798 48.166 48.026 48.244 -0.038647 18 10 2 0 0 0 0.80143 1 25983 25983 5.7604 0 1 1439000 63084 13181 41974 42917 73671 73671 0.11084592499514656 TAHVGSGDLF 10 Unmodified _TAHVGSGDLF_ 0 0 0 ENSG00000158985|ENST00000505065|CDC42SE2 ENSG00000158985|ENST00000505065|CDC42SE2 ENSG00000158985|ENST00000505065|CDC42SE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2452087402344 2 502.245806 1002.47706 0.76138 0.0003824 -1.2959 -0.00065088 -0.53455 -0.00026848 502.2449217773778 43.073 0.23617 43.073 42.947 43.183 0 19 11 2 0 0 0 0.074936 1 23344 23344 52.268 19.963 1 7421600 63085 6620 41975 42918 73672 73672 -0.02407993487577187 TAIAALLHY 9 Unmodified _TAIAALLHY_ 0 0 0 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 ENSG00000144820|ENST00000273352|ADGRG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2805480957031 2 486.779285 971.544017 0.69263 0.00033716 -0.20848 -0.00010148 0.48415 0.00023568 486.77905809058495 68.228 0.23348 67.748 67.616 67.85 -0.48071 19 10 2 0 0 0 0.068777 1 37276 37276 40.449 14.107 1 2422800 63086 5646 41976 42919 73673 73673 0.0571066179418267 TAIDDMEAY 9 Oxidation (M) _TAIDDM(Oxidation (M))EAY_ TAIDDM(1)EAY TAIDDM(57)EAY 0 0 1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7134399414062 2 522.713147 1043.41174 -0.68592 -0.00035854 -0.43998 -0.00022998 -1.1259 -0.00058852 522.7129647146563 32.232 0.41124 32.232 32.002 32.414 0 82 20 5 0 0 0 0.026094 2 16744 16744;16846 57.471 35.725 1 345290000 63087 1951 41977 42920 73674;73675 73674 332 -0.108227757955774 TAIDDMEAY 9 Oxidation (M) _TAIDDM(Oxidation (M))EAY_ TAIDDM(1)EAY TAIDDM(57)EAY 0 0 1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7130737304688 2 522.713147 1043.41174 -0.2465 -0.00012885 -0.16983 -8.8775E-05 -0.41633 -0.00021762 522.7130988787831 32.149 0.31009 32.179 32.009 32.319 0.029743 30 13 3 0 0 0 0.026094 1 16839 16839 57.471 35.725 1 4714000 63088 1951 41977 42920 73676 73676 332 -0.108227757955774 TAIDDMEAY 9 Oxidation (M) _TAIDDM(Oxidation (M))EAY_ TAIDDM(1)EAY TAIDDM(78)EAY 0 0 1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.71337890625 2 522.713147 1043.41174 0.82947 0.00043358 -0.6382 -0.00033359 0.19127 9.9981E-05 522.7129327998969 38.306 0.65973 33.937 33.597 34.257 -4.3689 142 40 5 0 0 0 0.010877 2 22536 22413;22536 77.984 51.101 1 492040000 63089 1951 41977 42920 73677;73678 73678 332 -0.108227757955774 TAIDDMEAY 9 Unmodified _TAIDDMEAY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7153930664062 2 514.71569 1027.41683 0.26981 0.00013887 -0.40312 -0.00020749 -0.13331 -6.8616E-05 514.7155750165982 47.139 0.35236 47.139 46.962 47.314 0 70 16 5 0 0 0 0.087258 1 25752 25752 36.044 24.404 1 55545000 63090 1951 41977 42921 73679 73679 -0.09578471932968569 TAIDDMEAY 9 Unmodified _TAIDDMEAY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1028.424560546875 1 1028.4241 1027.41683 -0.29082 -0.00029909 1.6916 0.0017397 1.4008 0.0014406 1028.4257805718971 47.125 0.29111 47.125 46.999 47.29 0 18 13 2 0 0 0 0.5029 1 25880 25880 7.2892 0 1 4989700 63091 1951 41977 42921 73680 73680 -0.09578471932968569 TAIDDMEAY 9 Unmodified _TAIDDMEAY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7160034179688 2 514.71569 1027.41683 1.1009 0.00056666 -0.43509 -0.00022395 0.66582 0.00034271 514.7154681054695 47.206 0.18002 47.173 47.105 47.285 -0.033421 12 8 2 0 0 0 0.48152 1 25447 25447 8.5933 3.8373 1 1860800 63092 1951 41977 42921 73681 73681 -0.09578471932968569 TAIDDMEAY 9 Unmodified _TAIDDMEAY_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7160034179688 2 514.71569 1027.41683 1.0786 0.00055517 -0.68502 -0.00035259 0.39357 0.00020258 514.7154509355711 55.267 0.65852 49.346 49.047 49.706 -5.9211 148 40 5 0 0 0 0.016184 2 35123 35123;35258 67.344 51.497 1 849840000 63093 1951 41977 42921 73682;73683 73682 -0.09578471932968569 TAIEAQHLL 9 Unmodified _TAIEAQHLL_ 0 0 0 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1 nc|ENSG00000104812|P13807-2|GYS1 nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2803039550781 2 498.279649 994.544745 0.52785 0.00026301 0.22547 0.00011234 0.75331 0.00037536 498.28000707371115 47.356 0.49785 47.356 47.125 47.623 0 82 22 5 0 0 0 0.12424 1 25975 25975 30.637 6.616 1 50371000 63094 2237 41978 42922 73684 73684 0.04725456443236453 TAIEAQHLL 9 Unmodified _TAIEAQHLL_ 0 0 0 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1 nc|ENSG00000104812|P13807-2|GYS1 nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2796020507812 2 498.279649 994.544745 0.55578 0.00027693 -0.038281 -1.9075E-05 0.5175 0.00025786 498.27951661622103 47.482 0.20187 47.13 47.064 47.266 -0.3526 13 9 2 0 0 0 0.25681 1 25497 25497 19.257 4.4187 1 2403900 63095 2237 41978 42922 73685 73685 0.04725456443236453 TAIEAQHLL 9 Unmodified _TAIEAQHLL_ 0 0 0 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1 nc|ENSG00000104812|P13807-2|GYS1 nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2798156738281 2 498.279649 994.544745 0.86667 0.00043184 -0.35301 -0.0001759 0.51366 0.00025595 498.27930267483623 53.086 0.45141 47.282 47.03 47.481 -5.8042 64 25 4 0 0 0 0.009483 2 33461 33461;33588 81.89 41.94 1 97234000 63096 2237 41978 42922 73686;73687 73686 0.04725456443236453 TAIEKVVQM 9 Oxidation (M) _TAIEKVVQM(Oxidation (M))_ TAIEKVVQM(1) TAIEKVVQM(130) 0 0 1 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7815551757812 2 517.781167 1033.54778 -0.24752 -0.00012816 0.37688 0.00019514 0.12937 6.6984E-05 517.7815134843167 28.986 0.43824 28.986 28.704 29.142 0 72 21 4 0 0 0 0.0020017 2 14980 14881;14980 132.38 67.145 1 37000000 63097 5434 41979 42923 73688;73689 73689 1000 0.03234963505747146 TAIEKVVQM 9 Oxidation (M) _TAIEKVVQM(Oxidation (M))_ TAIEKVVQM(1) TAIEKVVQM(120) 0 0 1 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7809448242188 2 517.781167 1033.54778 0.52604 0.00027237 -0.18991 -9.8333E-05 0.33612 0.00017404 517.7810698666891 28.971 0.31952 28.908 28.697 29.016 -0.062159 23 13 2 0 0 0 0.0048194 2 14903 14903;15002 117.76 67.828 1 6182900 63098 5434 41979 42923 73690;73691 73690 1000 0.03234963505747146 TAIEKVVQM 9 Oxidation (M) _TAIEKVVQM(Oxidation (M))_ TAIEKVVQM(1) TAIEKVVQM(140) 0 0 1 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7806396484375 2 517.781167 1033.54778 0.82964 0.00042957 -0.66286 -0.00034321 0.16679 8.6359E-05 517.7808844749383 33.242 0.51139 29.362 29.149 29.66 -3.8799 73 31 3 0 0 0 0.00049731 3 18960 18960;19085;19204 143.91 78.435 1 89748000 63099 5434 41979 42923 73692;73693;73694 73692 1000 0.03234963505747146 TAIEKVVQM 9 Unmodified _TAIEKVVQM_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7839050292969 2 509.78371 1017.55287 0.20414 0.00010407 -1.6757 -0.00085424 -1.4716 -0.00075018 509.7838188924396 43.384 0.28464 43.384 43.222 43.507 0 32 13 3 0 0 0 0.0082548 1 23539 23539 96.367 37.688 1 11477000 63100 5434 41979 42924 73695 73695 0.04479267368355977 TAIEKVVQM 9 Unmodified _TAIEKVVQM_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7837829589844 2 509.78371 1017.55287 0.96404 0.00049145 -1.1507 -0.00058661 -0.18667 -9.516E-05 509.7834611232429 49.461 0.51963 44.065 43.824 44.344 -5.3961 84 32 4 0 0 0 0.0074582 2 30812 30812;30936 110.55 62.804 1 232720000 63101 5434 41979 42924 73696;73697 73696 0.04479267368355977 TAIEKVVQM 9 Unmodified _TAIEKVVQM_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 509.78371 1017.55287 -0.099906 -5.0931E-05 -0.16411 -8.3658E-05 -0.26401 -0.00013459 509.78350895547817 43.586 0.13028 43.275 43.164 43.295 -0.31039 -0.054138 0.00018725 NaN 96.367 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 6624600 63102 5434 41979 42924 0.04479267368355977 TAIESTPTL 9 Unmodified _TAIESTPTL_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.49365234375 1 932.493504 931.486227 0.96889 0.00090349 -0.88841 -0.00082844 0.080479 7.5046E-05 932.4925919037348 46.326 0.29515 46.326 46.186 46.481 0 30 13 3 0 0 0 0.031062 3 25266 25266;25315;25374 54.774 16.8 1 7176700 63103 7146 41980 42925 73698;73699;73700 73698 0.01774355078100598 TAIESTPTL 9 Unmodified _TAIESTPTL_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7505798339844 2 466.75039 931.486227 1.0795 0.00050386 -0.24227 -0.00011308 0.83723 0.00039078 466.75003220224613 46.322 0.33636 46.322 46.164 46.501 0 39 15 3 0 0 0 0.019303 2 25272 25272;25392 64.236 13.381 1 23735000 63104 7146 41980 42925 73701;73702 73701 0.01774355078100598 TAIESTPTL 9 Unmodified _TAIESTPTL_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.75048828125 2 466.75039 931.486227 1.1907 0.00055574 0.8835 0.00041237 2.0742 0.00096812 466.75092579866373 53.898 0.4255 48.07 47.895 48.32 -5.8279 62 25 3 0 0 0 0.012148 2 34044 34044;34182 74.423 28.402 1 46506000 63105 7146 41980 42925 73703;73704 73703 0.01774355078100598 TAIESTPTL 9 Unmodified _TAIESTPTL_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15;nc|ENSG00000164134|Q9BXJ9-4|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4963989257812 1 932.493504 931.486227 1.2911 0.0012039 1.3331 0.0012431 2.6241 0.002447 932.4952564555657 53.956 0.38999 48.091 47.857 48.247 -5.8653 41 23 2 0 0 0 0.008678 2 34245 34095;34245 88.904 20.823 1 23605000 63106 7146 41980 42925 73705;73706 73706 0.01774355078100598 TAIGAHPVSM 10 Oxidation (M) _TAIGAHPVSM(Oxidation (M))_ TAIGAHPVSM(1) TAIGAHPVSM(96) 0 0 1 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567-3|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2506713867188 2 500.250034 998.485516 0.39271 0.00019645 0.20369 0.0001019 0.5964 0.00029835 500.250032904192 24.53 0.33866 21.703 21.534 21.872 -2.8273 30 18 2 0 0 0 0.0058182 1 13336 13336 96.111 54.271 1 4152100 63107 768 41981 42926 73707 73707 120 -0.01378762842591641 TAIGAHPVSM 10 Unmodified _TAIGAHPVSM_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A;nc|ENSG00000054965|Q92567-3|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2507629394531 2 492.252577 982.490601 0.33839 0.00016657 -4.466 -0.0021984 -4.1276 -0.0020318 492.25061339624006 38.582 0.28794 34.213 34.045 34.333 -4.3689 26 18 2 0 0 0 0.20962 1 22752 22752 32.786 0.4802 1 13332000 63108 768 41981 42927 73708 73708 -0.0013445897998280998 TAIGELPPY 9 Unmodified _TAIGELPPY_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|24|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;CLTC-VMP1|10|fusion CLTC-VMP1|6|fusion;CACNG4-VMP1|1|fusion CLTC-VMP1|6|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5050659179688 1 960.503674 959.496398 0.17308 0.00016624 -0.4036 -0.00038766 -0.23052 -0.00022141 960.5030643433346 59.324 0.81398 59.324 58.902 59.716 0 60 35 2 0 0 0 0.023164 3 32996 32886;32996;33104 60.39 24.345 1 2581800 63109 130;48 41982 42928 73709;73710;73711 73710 0.015029628033289555 TAIGELPPY 9 Unmodified _TAIGELPPY_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|24|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;CLTC-VMP1|10|fusion CLTC-VMP1|6|fusion;CACNG4-VMP1|1|fusion CLTC-VMP1|6|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7548217773438 2 480.755475 959.496398 0.41339 0.00019874 0.090912 4.3706E-05 0.5043 0.00024245 480.75535150811953 59.244 0.82854 59.244 58.945 59.773 0 63 36 2 0 0 0 0.03327 4 32909 32909;33016;33124;33260 53.576 28.902 1 2915400 63110 130;48 41982 42928 73712;73713;73714;73715 73712 0.015029628033289555 TAIGELPPY 9 Unmodified _TAIGELPPY_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|24|fusion;nc|ENSG00000062716|Q96GC9-2|VMP1;CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1;CLTC-VMP1|10|fusion CLTC-VMP1|6|fusion;CACNG4-VMP1|1|fusion CLTC-VMP1|6|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7556457519531 2 480.755475 959.496398 0.86354 0.00041515 -0.094015 -4.5198E-05 0.76952 0.00036995 480.75512811011623 67.313 0.73939 61.137 60.646 61.385 -6.1757 56 41 2 0 0 0 0.0086179 1 43695 43695 89.427 43.406 1 17086000 63111 130;48 41982 42928 73716 73716 0.015029628033289555 TAIGTAPVP 9 Unmodified _TAIGTAPVP_ 0 0 0 ENST00000536759.2_1_17:80402763-80402916:-|nuORF ENST00000536759.2_1_17:80402763-80402916:-|nuORF ENST00000536759.2_1_17:80402763-80402916:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.466552734375 1 826.466895 825.459619 -0.08831 -7.2985E-05 1.2856 0.0010625 1.1973 0.00098954 826.4679371174517 55.261 0.14907 54.783 54.712 54.861 -0.47798 10 6 2 0 0 0 0.052168 1 29974 29974 44.407 6.2558 1 887680 63112 14981 41983 42929 73717 73717 0.03990710977427625 TAIKIKLAA 9 Unmodified _TAIKIKLAA_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.6188354492188 1 928.618979 927.611703 1.5895 0.001476 -0.27135 -0.00025198 1.3181 0.001224 928.6184707874319 105.24 0.22643 99.068 98.947 99.174 -6.1757 135 52 4 0 0 0 0.62242 2 70429 70429;70570 0 0 1 597910000 + 63113 22770 41984 42930 73718;73719 73718 0.14500111724964881 TAIKPLPSY 9 Unmodified _TAIKPLPSY_ 0 0 0 nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2877807617188 2 495.286943 988.559333 -0.16285 -8.0659E-05 0.80899 0.00040068 0.64613 0.00032002 495.2873043222432 41.817 0.25371 41.817 41.668 41.921 0 24 12 3 0 0 0 0.0093064 1 22575 22575 83.429 54.942 1 7482600 63114 3641 41985 42931 73720 73720 0.06459528591358321 TAIKPLPSY 9 Unmodified _TAIKPLPSY_ 0 0 0 nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2873840332031 2 495.286943 988.559333 -0.031888 -1.5793E-05 -0.60256 -0.00029844 -0.63445 -0.00031423 495.2866506150191 42.113 0.21774 41.806 41.682 41.9 -0.30682 21 10 3 0 0 0 0.0081 1 22322 22322 93.938 57.811 1 15247000 63115 3641 41985 42931 73721 73721 0.06459528591358321 TAIKPLPSY 9 Unmodified _TAIKPLPSY_ 0 0 0 nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2876281738281 2 495.286943 988.559333 0.74183 0.00036742 -0.135 -6.6866E-05 0.60683 0.00030055 495.28667978515415 47.04 0.40625 41.96 41.805 42.211 -5.0805 72 36 3 0 0 0 0.0074582 2 29294 29162;29294 110.55 79.916 1 60445000 63116 3641 41985 42931 73722;73723 73723 0.06459528591358321 TAIKPLPSY 9 Unmodified _TAIKPLPSY_ 0 0 0 nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 MSMS AL20221201_MKP_PDAC_01 4 495.2855834960938 2 495.286943 988.559333 NaN NaN NaN NaN NaN NaN NaN 46.88 1 41.799 41.299 42.299 -5.0805 0 0 0 0.0098005 1 29033 29033 93.166 64.084 1 63117 3641 41985 42931 73724 73724 0.06459528591358321 TAILEQLLY 9 Unmodified _TAILEQLLY_ 0 0 0 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 ENSG00000197885|ENST00000425478|NKIRAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3053588867188 2 532.305332 1062.59611 0.36758 0.00019566 -1.4478 -0.00077065 -1.0802 -0.00057499 532.3043565647155 91.707 0.32491 91.226 91.105 91.43 -0.48092 44 23 3 0 0 0 0.16226 1 50184 50184 26.884 15.243 1 1710000 63118 10016 41986 42932 73725 73725 0.0673178041729443 TAILPPQSVSQ 11 Unmodified _TAILPPQSVSQ_ 0 0 0 REV__nc|ENSG00000102804|Q15714-3|TSC22D1 REV__nc|ENSG00000102804|Q15714-3|TSC22D1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.818603515625 2 570.816596 1139.61864 NaN NaN NaN NaN NaN NaN NaN 33.44 1 33.44 32.94 33.94 0 0 0 0 0.77961 1 17541 17541 13.042 0 1 + 63119 18257 41987 42933 73726 73726 0.05441379814897118 TAIPVHDGY 9 Unmodified _TAIPVHDGY_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7423400878906 2 486.742899 971.471246 -0.48858 -0.00023781 0.25636 0.00012478 -0.23222 -0.00011303 486.74294360289457 33.12 0.25526 33.12 32.968 33.223 0 29 12 3 0 0 0 0.070838 1 17306 17306 39.957 13.074 1 8670800 63120 4829 41988 42934 73727 73727 -0.015630919992418058 TAIPVHDGY 9 Unmodified _TAIPVHDGY_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7432250976562 2 486.742899 971.471246 1.0913 0.00053117 -0.33931 -0.00016516 0.75196 0.00036601 486.7428716401789 37.995 0.30168 33.626 33.4 33.702 -4.3689 33 17 2 0 0 0 0.16226 1 22267 22267 26.884 11.036 1 20390000 63121 4829 41988 42934 73728 73728 -0.015630919992418058 TAIPVHDGY 9 Unmodified _TAIPVHDGY_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.742899 971.471246 -0.11259 -5.4803E-05 0.13624 6.6314E-05 0.02365 1.1511E-05 486.7429895376513 32.943 0.38907 32.784 32.57 32.959 -0.15918 -0.1678 -8.046E-05 NaN 39.957 28 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2654600 63122 4829 41988 42934 -0.015630919992418058 TAIPVHDGYVL 11 Unmodified _TAIPVHDGYVL_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3214111328125 2 592.819138 1183.62372 0.017059 1.0113E-05 0.70136 0.00041578 0.71841 0.00042589 592.8191300917354 55.818 0.28709 55.34 55.192 55.479 -0.47798 26 13 3 0 0 0 0.4121 1 30322 30322 32.786 21.291 1 3885600 63123 4829 41989 42935 73729 73729 0.03925683677516645 TAIPVHDGYVL 11 Unmodified _TAIPVHDGYVL_ 0 0 0 nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ENSG00000077080|ENST00000160382|ACTL6B nc|ENSG00000136518|O96019-2|ACTL6A nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 592.819138 1183.62372 -0.46568 -0.00027606 0.38199 0.00022645 -0.083691 -4.9613E-05 592.8186144155824 55.302 0.35991 55.302 55.077 55.437 0 -0.019052 -0.00018345 NaN 32.786 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4822300 63124 4829 41989 42935 0.03925683677516645 TAIRALETY 9 Unmodified _TAIRALETY_ 0 0 0 ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2;ENST00000506628.1_1_5:95242411-95297425:-|nuORF ENSG00000118985|ENST00000237853|ELL2 ENSG00000118985|ENST00000237853|ELL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2850341796875 2 519.284931 1036.55531 0.15098 7.8401E-05 -0.21096 -0.00010955 -0.059982 -3.1148E-05 519.2846561361039 42.019 0.27948 42.019 41.864 42.143 0 41 14 4 0 0 0 0.0039711 2 22670 22670;22783 121.53 79.694 1 26861000 63125 3406 41990 42936 73730;73731 73730 0.03849439097666618 TAIRALETY 9 Unmodified _TAIRALETY_ 0 0 0 ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2;ENST00000506628.1_1_5:95242411-95297425:-|nuORF ENSG00000118985|ENST00000237853|ELL2 ENSG00000118985|ENST00000237853|ELL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.7664794921875 2 519.284931 1036.55531 0.98432 0.00051114 0.33853 0.00017579 1.3229 0.00068694 519.28488788199 47.209 0.41137 42.128 41.955 42.366 -5.0805 59 28 3 0 0 0 0.065878 1 29359 29359 51.415 23.786 1 34410000 63126 3406 41990 42936 73732 73732 0.03849439097666618 TAIREAQTF 9 Unmodified _TAIREAQTF_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7748413085938 2 518.774731 1035.53491 -0.036777 -1.9079E-05 -1.5372 -0.00079746 -1.574 -0.00081654 518.7738634656164 30.893 0.21914 30.893 30.831 31.051 0 29 10 4 0 0 0 0.0085366 2 16077 16065;16077 90.135 55.203 1 33544000 63127 410 41991 42937 73733;73734 73734 0.018562684378366612 TAIREAQTF 9 Unmodified _TAIREAQTF_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7731323242188 2 518.774731 1035.53491 1.0638 0.00055186 -0.57377 -0.00029766 0.49001 0.0002542 518.7741986977491 34.979 0.26734 30.884 30.668 30.935 -4.0951 46 15 4 0 0 0 0.0089732 1 20159 20159 86.332 37.986 1 52446000 63128 410 41991 42937 73735 73735 0.018562684378366612 TAIRGAIIL 9 Unmodified _TAIRGAIIL_ 0 0 0 ENST00000494359.1_1_11:17250107-17250695:+|nuORF;ENST00000397318.4_1_X:40794237-40794825:-|nuORF;ENST00000533872.5_1_16:2012101-2013018:-|nuORF;ENST00000438210.1_1_1:40428398-40429073:+|nuORF;ENST00000532746.5_2_16:2012101-2013785:-|nuORF;ENSG00000140988|ENST00000343262|RPS2;ENST00000527871.5_1_16:2012676-2013018:-|nuORF;ENST00000479476.1_1_18:68097766-68098228:+|nuORF;ENST00000533161.5_1_16:2012676-2014626:-|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF ENST00000494359.1_1_11:17250107-17250695:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.3028564453125 2 464.302927 926.591301 0.017283 8.0247E-06 -1.3205 -0.00061313 -1.3033 -0.0006051 464.30226449478954 56.418 0.24851 56.349 56.23 56.479 -0.068737 21 12 2 0 0 0 0.11784 1 30664 30664 31.268 5.869 1 7450400 63129 5291 41992 42938 73736 73736 0.125069410651804 TAIRSASAY 9 Unmodified _TAIRSASAY_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2483215332031 2 470.248349 938.482145 NaN NaN NaN NaN NaN NaN NaN 20.964 1 20.964 20.464 21.464 0 0 0 0 0.25233 1 10576 10576 27.629 8.1898 1 63130 3522 41993 42939 73737 73737 0.010443103750390037 TAIRSASAY 9 Unmodified _TAIRSASAY_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 469.792724609375 2 470.248349 938.482145 0.12588 5.9195E-05 0.21107 9.9256E-05 0.33695 0.00015845 470.2488201291963 23.853 0.20615 21.026 20.867 21.073 -2.8273 17 12 2 0 0 0 0.13704 1 12893 12893 32.786 20.545 1 1829100 63131 3522 41993 42939 73738 73738 0.010443103750390037 TAIRYWFHY 9 Unmodified _TAIRYWFHY_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5452575683594 3 419.545219 1255.61383 0.72656 0.00030483 -2.2977 -0.00096397 -1.5711 -0.00065915 419.87868199180593 58.007 0.20057 57.941 57.852 58.053 -0.066036 21 9 3 0 0 0 0.28047 1 31581 31581 17.113 12.923 1 5099900 63132 5701 41994 42940 73739 73739 -0.003754595372129188 TAISLFYEL 9 Unmodified _TAISLFYEL_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7843017578125 2 528.784233 1055.55391 0.50682 0.000268 0.06307 3.335E-05 0.56989 0.00030135 528.7839581700604 100.63 0.22677 94.452 94.33 94.556 -6.1757 44 15 5 0 0 0 0.042911 1 67285 67285 48.346 31.404 1 1697499999.9999998 63133 7651 41995 42941 73740 73740 0.0283580500890821 TAISPPPVLY 10 Unmodified _TAISPPPVLY_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.3006591796875 2 529.30005 1056.58555 -0.17545 -9.2866E-05 0.849 0.00044937 0.67355 0.00035651 529.3003231631719 69.686 0.57876 69.207 68.974 69.553 -0.47903 66 25 3 0 0 0 0.043729 1 38150 38150 61.357 36.684 1 2825700 63134 3881 41996 42942 73741 73741 0.059517977628502194 TAISPPPVLY 10 Unmodified _TAISPPPVLY_ 0 0 0 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 ENSG00000125775|ENST00000360779|SDCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.3020629882812 2 529.30005 1056.58555 0.27443 0.00014526 -0.81174 -0.00042965 -0.5373 -0.00028439 529.2991588242049 76.846 0.44877 70.67 70.431 70.879 -6.1757 38 23 2 0 0 0 0.024981 2 50216 50216;50364 71.134 42.052 1 18616000 63135 3881 41996 42942 73742;73743 73742 0.059517977628502194 TAISTSYERLL 11 Unmodified _TAISTSYERLL_ 0 0 0 REV__nc|ENSG00000152942|O75943-3|RAD17 REV__nc|ENSG00000152942|O75943-3|RAD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.33935546875 2 627.340435 1252.66632 0.24324 0.00015259 -3.706 -0.0023249 -3.4628 -0.0021723 627.3384667510499 65.908 0.21891 65.908 65.776 65.995 0 15 11 2 0 0 0 0.63851 1 36715 36715 9.3831 3.1773 1 1712400 + 63136 21142 41997 42943 73744 73744 0.05009034015074576 TAITAEEYF 9 Unmodified _TAITAEEYF_ 0 0 0 ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B;nc|ENSG00000198720|Q86YJ7-2|ANKRD13B ENST00000487527.5_1_17:27916841-27940597:+|nuORF ENST00000487527.5_1_17:27916841-27940597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7476806640625 2 522.747847 1043.48114 0.40191 0.0002101 0.34836 0.00018211 0.75027 0.0003922 522.7485012527825 64.31 0.25943 64.31 64.168 64.427 0 24 11 3 0 0 0 0.14602 1 35826 35826 28.487 3.813 1 1464800 63137 10132 41998 42944 73745 73745 -0.03885948784522952 TAIYLDTHF 9 Unmodified _TAIYLDTHF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.771728515625 2 540.771657 1079.52876 0.58384 0.00031572 -0.15601 -8.4366E-05 0.42783 0.00023136 540.7716334950559 60.052 0.6552 60.052 59.839 60.494 0 82 29 5 0 0 0 0.0082281 3 33422 33422;33530;33639 92.822 56.695 1 68706000 63138 3760 41999 42945 73746;73747;73748 73746 -0.007822497936786021 TAIYLDTHF 9 Unmodified _TAIYLDTHF_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7721557617188 2 540.771657 1079.52876 -0.22953 -0.00012412 -0.52245 -0.00028252 -0.75197 -0.00040665 540.7718284361989 60.515 0.44469 60.025 59.847 60.291 -0.48932 82 21 5 0 0 0 0.0095811 2 32910 32910;33008 81.613 45.486 1 95102000 63139 3760 41999 42945 73749;73750 73749 -0.007822497936786021 TAIYVFLFVVF 11 Unmodified _TAIYVFLFVVF_ 0 0 0 REV__ENSG00000181939|ENST00000642128|OR4C15 REV__ENSG00000181939|ENST00000642128|OR4C15 MSMS AL20221201_MKP_PDAC_01 4 659.8758544921875 2 659.875925 1317.7373 NaN NaN NaN NaN NaN NaN NaN 99.776 1 93.6 93.1 94.1 -6.1757 0 0 0 0.69464 1 66548 66548 17.113 0 1 + 63140 23232 42000 42946 73751 73751 0.091137787905609 TAKAPSTEY 9 Unmodified _TAKAPSTEY_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2388610839844 2 484.24019 966.465826 -0.31893 -0.00015444 1.7059 0.00082607 1.387 0.00067163 484.24121906279777 18.517 0.2702 18.517 18.301 18.571 0 63 36 2 0 0 0 0.34999 1 9174 9174 14.838 5.4908 1 1519600 63141 4835 42001 42947 73752 73752 -0.018748155817092993 TAKAPSTEY 9 Unmodified _TAKAPSTEY_ 0 0 0 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 ENSG00000136542|ENST00000259056|GALNT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2408752441406 2 484.24019 966.465826 1.1698 0.00056647 1.0955 0.0005305 2.2653 0.001097 484.2406959325553 19.985 0.1975 17.329 17.239 17.436 -2.6564 16 10 2 0 0 0 0.05483 1 10606 10606 43.772 20.624 1 1105900 63142 4835 42001 42947 73753 73753 -0.018748155817092993 TAKCEYSCGGG 11 Unmodified _TAKCEYSCGGG_ 0 0 0 REV__ENST00000444945.1_1_19:11777510-11777738:-|nuORF REV__ENST00000444945.1_1_19:11777510-11777738:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2127685546875 2 538.212792 1074.41103 0.22053 0.00011869 0.37855 0.00020374 0.59908 0.00032243 538.212777514382 64.284 0.32672 64.284 64.147 64.473 0 38 14 4 0 0 0 0.6889 1 35830 35830 5.2969 0.54088 1 2227300 + 63143 27128 42002 42948 73754 73754 -0.12319893716289698 TAKEVQTIEVY 11 Unmodified _TAKEVQTIEVY_ 0 0 0 ENSG00000131652|ENST00000326266|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;nc|ENSG00000131652|Q86W42-3|THOC6 ENSG00000131652|ENST00000326266|THOC6 ENSG00000131652|ENST00000326266|THOC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.8406372070312 2 640.840268 1279.66598 -0.62141 -0.00039822 0.82887 0.00053117 0.20746 0.00013295 640.8404801920407 41.135 0.21609 41.135 41.045 41.261 0 19 10 3 0 0 0 0.42115 1 22198 22198 24.882 10.043 1 2647900 63144 4340 42003 42949 73755 73755 0.0373361429524266 TAKPKPTSSF 10 Unmodified _TAKPKPTSSF_ 0 0 0 REV__nc|ENSG00000110274|Q9UPV0-2|CEP164 REV__nc|ENSG00000110274|Q9UPV0-2|CEP164 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2920532226562 2 532.292756 1062.57096 0.38454 0.00020469 -0.61621 -0.00032801 -0.23167 -0.00012332 532.2924380054998 39.497 0.3404 39.497 39.321 39.661 0 40 15 4 0 0 0 0.67046 1 21262 21262 10.824 0 1 26325000 + 63145 18701 42004 42950 73756 73756 0.04217725614716983 TAKQPDELS 9 Unmodified _TAKQPDELS_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7515563964844 2 494.750921 987.48729 0.35586 0.00017606 1.4573 0.00072098 1.8131 0.00089704 494.75156337236393 57.965 0.33636 57.965 57.794 58.131 0 24 13 2 0 0 0 0.38785 1 32268 32268 13.042 1.5478 1 5370700 63146 3063 42005 42951 73757 73757 -0.006954305530030069 TAKRGLKG 8 Unmodified _TAKRGLKG_ 0 0 0 ENST00000331161.8_1_10:25304942-25305050:-|nuORF ENST00000331161.8_1_10:25304942-25305050:-|nuORF ENST00000331161.8_1_10:25304942-25305050:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 831.0245971679688 1 830.520662 829.513385 1.6443 0.0013656 2.6742 0.002221 4.3185 0.0035866 830.5228706011109 104.19 0.058098 98.016 97.974 98.032 -6.1757 6 4 2 0 0 0 8.7369 1 69801 69801 0 0 1 4676200 63147 11858 42006 42952 73758 73758 0.09180928199816663 TAKSEAQLEEL 11 Unmodified _TAKSEAQLEEL_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.878173828125 3 406.878592 1217.61395 NaN NaN NaN NaN NaN NaN NaN 8.2327 1 8.2502 7.7502 8.7502 0.017581 0 0 0 0.94201 1 4102 4102 0.36667 0 1 63148 16194 42007 42953 73759 73759 0.01384450881482735 TAKSVTCTY 9 Carbamidomethyl (C) _TAKSVTC(Carbamidomethyl (C))TY_ TAKSVTC(1)TY TAKSVTC(65)TY 0 1 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.S127F|1|0.37|ENSG00000141510|chr17:7675232-7675232|G/A|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7476806640625 2 515.747324 1029.4801 1.1376 0.00058671 -0.42031 -0.00021678 0.71728 0.00036994 515.7471775469099 20.938 0.34305 18.245 18.11 18.453 -2.693 40 19 3 0 0 0 0.018061 2 11231 11123;11231 65.474 26.785 1 6358200 63149 5341;30196 42008 42954 73760;73761 73761 549 -0.03346486425061812 TAKWEALRRR 10 Unmodified _TAKWEALRRR_ 0 0 0 REV__ENSG00000115539|ENST00000264254|PDCL3 REV__ENSG00000115539|ENST00000264254|PDCL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8782958984375 2 643.875645 1285.73674 1.5968 0.0010282 2.1618 0.0013919 3.7587 0.0024201 643.8772687536588 81.416 0.2653 81.476 81.371 81.636 0.059929 20 9 3 0 0 0 0.63399 1 45040 45040 9.3831 0 1 2652600 + 63150 18990 42009 42955 73762 73762 0.1052979691407927 TAKWGRGR 8 Unmodified _TAKWGRGR_ 0 0 0 REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF REV__ENST00000341011.11_1_17:41448764-41458699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.264892578125 2 466.264668 930.514782 NaN NaN NaN NaN NaN NaN NaN 6.2809 1 6.2898 5.7898 6.7898 0.0089307 0 0 0 0.97444 1 3151 3151 0.69038 0 1 + 63151 25700 42010 42956 73763 73763 0.04674562288573725 TALASQSAGI 10 Unmodified _TALASQSAGI_ 0 0 0 ENST00000589797.5_1_17:40732947-40733403:-|nuORF ENST00000589797.5_1_17:40732947-40733403:-|nuORF ENST00000589797.5_1_17:40732947-40733403:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7492980957031 2 459.748182 917.481811 0.57433 0.00026405 0.41599 0.00019125 0.99032 0.0004553 459.7478682582168 63.34 0.8162 63.34 63.008 63.824 0 63 38 3 0 0 0 0.1899 2 35263 35263;35364 34.932 2.6266 1 11899000 63152 15678 42011 42957 73764;73765 73764 0.019768906552030785 TALDIVNQF 9 Unmodified _TALDIVNQF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7721557617188 2 510.771657 1019.52876 0.59651 0.00030468 0.16124 8.2355E-05 0.75774 0.00038703 510.7716935561725 74.167 0.44125 74.167 73.901 74.342 0 46 20 3 0 0 0 0.06187 2 41319 41217;41319 42.095 13.836 1 3353500 63153 8674 42012 42958 73766;73767 73767 0.019777502063334396 TALDIVNQF 9 Unmodified _TALDIVNQF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.772216796875 2 510.771657 1019.52876 0.52794 0.00026966 0.50011 0.00025544 1.0281 0.0005251 510.7719178094293 74.717 0.40903 74.241 73.997 74.406 -0.47588 57 16 5 0 0 0 0.012148 2 40911 40814;40911 74.423 45.936 1 7761600 63154 8674 42012 42958 73768;73769 73769 0.019777502063334396 TALDIVNQF 9 Unmodified _TALDIVNQF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7723083496094 2 510.771657 1019.52876 0.47233 0.00024125 0.65532 0.00033472 1.1276 0.00057597 510.7719643956892 82.736 0.52037 76.56 76.288 76.808 -6.1757 68 29 3 0 0 0 0.012148 2 54407 54276;54407 74.423 38.379 1 37490000 63155 8674 42012 42958 73770;73771 73771 0.019777502063334396 TALDIVNQF 9 Unmodified _TALDIVNQF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 510.771657 1019.52876 -0.36496 -0.00018641 2.4022 0.001227 2.0372 0.0010406 511.2735909447724 76.812 0.11182 76.332 76.276 76.388 -0.47945 -0.11378 0.0017637 NaN 74.423 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 558760 63156 8674 42012 42958 0.019777502063334396 TALDIVNQF 9 Unmodified _TALDIVNQF_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 510.771657 1019.52876 0.5762 0.0002943 0.75005 0.0003831 1.3262 0.00067741 510.77172535475376 74.198 0.14132 74.242 74.137 74.279 0.043983 0.011863 0.0003183 NaN 74.423 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 675070 63157 8674 42012 42958 0.019777502063334396 TALDKIEEM 9 Oxidation (M) _TALDKIEEM(Oxidation (M))_ TALDKIEEM(1) TALDKIEEM(65) 0 0 1 ENSG00000093167|ENST00000336686|LRRFIP2;nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.259765625 2 533.260265 1064.50598 -0.15331 -8.1755E-05 -0.87751 -0.00046794 -1.0308 -0.0005497 533.2597673242278 30.846 0.26318 30.846 30.711 30.974 0 27 12 3 0 0 0 0.018061 1 16024 16024 65.474 6.7949 1 3694900 63158 1632 42013 42959 73772 73772 276 -0.023696369734580003 TALDKIEEM 9 Oxidation (M) _TALDKIEEM(Oxidation (M))_ TALDKIEEM(1) TALDKIEEM(50) 0 0 1 ENSG00000093167|ENST00000336686|LRRFIP2;nc|ENSG00000093167|Q9Y608-3|LRRFIP2;ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.260498046875 2 533.260265 1064.50598 0.14827 7.9065E-05 0.16667 8.8881E-05 0.31494 0.00016795 533.2604497229054 31.122 0.263 31.122 31.013 31.276 0 25 12 3 0 0 0 0.040683 1 16203 16203 49.554 13.427 1 3555000 63159 1632 42013 42959 73773 73773 276 -0.023696369734580003 TALDKVGYY 9 Unmodified _TALDKVGYY_ 0 0 0 REV__ENSG00000174599|ENST00000310754|TRAM1L1 REV__ENSG00000174599|ENST00000310754|TRAM1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2662963867188 2 515.266207 1028.51786 0.15088 7.7742E-05 -1.1262 -0.0005803 -0.97533 -0.00050255 515.2657249775895 65.398 0.3081 65.398 65.219 65.528 0 18 11 2 0 0 0 0.21643 1 36468 36468 21.537 3.3906 1 1052400 + 63160 22803 42014 42960 73774 73774 0.004743478320506256 TALDKVGYY 9 Unmodified _TALDKVGYY_ 0 0 0 REV__ENSG00000174599|ENST00000310754|TRAM1L1 REV__ENSG00000174599|ENST00000310754|TRAM1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.266207 1028.51786 0.15088 7.7742E-05 -1.1262 -0.0005803 -0.97533 -0.00050255 515.2657249775895 65.398 0.3081 65.398 65.219 65.528 0 0 0 NaN 21.537 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1052400 + 63161 22803 42014 42960 0.004743478320506256 TALEELNRRY 10 Unmodified _TALEELNRRY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.22607421875 3 422.226326 1263.65715 -0.5776 -0.00024388 0.22916 9.6756E-05 -0.34844 -0.00014712 422.2263980291099 34.875 0.22461 34.875 34.753 34.977 0 26 11 3 0 0 0 0.32533 1 18410 18410 25.997 14.366 1 6114800 63162 3740 42015 42961 73775 73775 0.0358668544943157 TALEELNRRY 10 Unmodified _TALEELNRRY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.875732421875 3 422.226326 1263.65715 1.1163 0.00047133 -0.29656 -0.00012522 0.81974 0.00034612 422.22587730596325 39.032 0.24466 34.581 34.459 34.704 -4.4509 21 15 2 0 0 0 0.2349 1 23044 23044 10.315 1.339 1 8951800 63163 3740 42015 42961 73776 73776 0.0358668544943157 TALEELNRRY 10 Unmodified _TALEELNRRY_ 0 0 0 ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF ENSG00000123989|ENST00000243776|CHPF ENSG00000123989|ENST00000243776|CHPF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 422.226326 1263.65715 -0.33125 -0.00013986 0.65391 0.0002761 0.32266 0.00013624 422.2266857208471 35.028 0.18286 34.805 34.691 34.873 -0.2224 0.051568 0.00037934 NaN 10.315 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1030900 63164 3740 42015 42961 0.0358668544943157 TALEIIVNM 9 Unmodified _TALEIIVNM_ 0 0 0 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;ENSG00000155393|ENST00000299192|HEATR3 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 nc|ENSG00000155393|Q7Z4Q2-3|HEATR3 MSMS AL20221201_MKP_PDAC_01 4 502.2781982421875 2 502.27826 1002.54197 NaN NaN NaN NaN NaN NaN NaN 95.643 1 89.467 88.967 89.967 -6.1757 0 0 0 0.080768 1 63357 63357 48.346 14.243 1 63165 6387 42016 42962 73777 73777 0.0407986499405979 TALELHTEL 9 Unmodified _TALELHTEL_ 0 0 0 nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH nc|ENSG00000134444|Q9P260|RELCH nc|ENSG00000134444|Q9P260|RELCH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7769775390625 2 513.776939 1025.53933 0.84333 0.00043328 0.6761 0.00034736 1.5194 0.00078065 513.7769813694911 51.267 0.20234 51.267 51.167 51.369 0 16 8 2 0 0 0 0.0095811 1 28325 28325 81.613 30.758 1 3578400 63166 4608 42017 42963 73778 73778 0.027577328607549134 TALELKCK 8 Unmodified _TALELKCK_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2607116699219 2 453.259871 904.505189 1.6827 0.00076272 1.4002 0.00063465 3.0829 0.0013974 453.2603844888818 105.3 0.13029 99.125 99.047 99.177 -6.1757 52 30 2 0 0 0 0.80722 1 70545 70545 2.3027 0.24298 1 105540000 + 63167 24644 42018 42964 73779 73779 0.04911613168155782 TALEMLTAF 9 Unmodified _TALEMLTAF_ 0 0 0 ENST00000467349.1_1_2:74699248-74699665:-|nuORF;ENSG00000204822|ENST00000258105|MRPL53 ENST00000467349.1_1_2:74699248-74699665:-|nuORF ENST00000467349.1_1_2:74699248-74699665:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7570190429688 2 498.757161 995.499769 0.79377 0.0003959 -1.4186 -0.00070756 -0.62487 -0.00031166 498.7562105872613 99.931 0.089058 93.756 93.715 93.804 -6.1757 9 6 2 0 0 0 0.023164 1 66711 66711 60.39 43.447 1 16085000 63168 10328 42019 42965 73780 73780 0.0018388958568493763 TALENPVKY 9 Unmodified _TALENPVKY_ 0 0 0 ENST00000483755.5_1_10:124742467-124749713:+|nuORF;ENST00000465232.5_1_10:124742932-124749886:+|nuORF;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK;ENSG00000179988|ENST00000406217|PSTK ENST00000483755.5_1_10:124742467-124749713:+|nuORF ENST00000483755.5_1_10:124742467-124749713:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7821655273438 2 517.779482 1033.54441 0.3593 0.00018604 2.6684 0.0013816 3.0277 0.0015677 517.7814402159339 37.19 0.25672 37.19 37.076 37.333 0 21 12 2 0 0 0 0.017075 1 19779 19779 66.457 35.82 1 6966600 63169 8877 42020 42966 73781 73781 0.028980367233771176 TALENPVKY 9 Unmodified _TALENPVKY_ 0 0 0 ENST00000483755.5_1_10:124742467-124749713:+|nuORF;ENST00000465232.5_1_10:124742932-124749886:+|nuORF;nc|ENSG00000179988|Q8IV42-2|PSTK;nc|ENSG00000179988|Q8IV42|PSTK;ENSG00000179988|ENST00000406217|PSTK ENST00000483755.5_1_10:124742467-124749713:+|nuORF ENST00000483755.5_1_10:124742467-124749713:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.240478515625 2 517.779482 1033.54441 1.0639 0.00055089 2.5962 0.0013443 3.6602 0.0018952 517.7809943316804 42.744 0.30835 38.059 37.952 38.26 -4.6846 24 19 2 0 0 0 0.16524 1 25878 25878 26.268 13.226 1 11841000 63170 8877 42020 42966 73782 73782 0.028980367233771176 TALEQLLQAY 10 Unmodified _TALEQLLQAY_ 0 0 0 nc|ENSG00000015475|P55957-4|BID;ENSG00000015475|ENST00000622694|BID;nc|ENSG00000015475|P55957-2|BID nc|ENSG00000015475|P55957-4|BID nc|ENSG00000015475|P55957-4|BID MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3115234375 2 575.311146 1148.60774 0.60611 0.0003487 0.53489 0.00030773 1.141 0.00065643 575.3112319193256 88.165 0.28279 87.661 87.507 87.79 -0.50423 19 11 2 0 0 0 0.35903 1 48204 48204 24.021 12.526 1 983540 63171 495 42021 42967 73783 73783 0.03937977440614304 TALERRIEY 9 Unmodified _TALERRIEY_ 0 0 0 ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1 ENSG00000254999|ENST00000530758|BRK1 ENSG00000254999|ENST00000530758|BRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5462341308594 3 384.212017 1149.61422 -0.36341 -0.00013963 0.98284 0.00037762 0.61943 0.00023799 384.212372963666 29.4 0.20843 29.4 29.262 29.47 0 28 9 4 0 0 0 0.094149 1 15207 15207 26.021 10.772 1 6720500 63172 10784 42022 42968 73784 73784 0.04539915391978866 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ TALESLIEM(1) TALESLIEM(71) 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7572326660156 2 511.757358 1021.50016 0.24709 0.00012645 -0.36744 -0.00018804 -0.12035 -6.1588E-05 511.75718549267305 64.29 0.44987 64.29 64.046 64.496 0 62 19 4 0 0 0 0.013323 2 35879 35782;35879 71.134 33.16 1 28787000 63173 6840 42023 42969 73785;73786 73786 1184 -0.00972735485117937 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ TALESLIEM(1) TALESLIEM(64) 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7572326660156 2 511.757358 1021.50016 0.22183 0.00011352 -0.15447 -7.9052E-05 0.067357 3.447E-05 511.7575212853712 64.686 0.42794 64.686 64.473 64.901 0 79 20 6 0 0 0 0.019303 1 36107 36107 64.236 30.134 1 30305000 63174 6840 42023 42969 73787 73787 1184 -0.00972735485117937 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ TALESLIEM(1) TALESLIEM(57) 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7582702636719 2 511.757358 1021.50016 0.29313 0.00015001 0.27779 0.00014216 0.57092 0.00029217 511.7573151786759 64.822 0.38573 64.337 64.209 64.594 -0.48512 41 17 3 0 0 0 0.026094 1 35345 35345 57.471 23.369 1 3110500 63175 6840 42023 42969 73788 73788 1184 -0.00972735485117937 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ TALESLIEM(1) TALESLIEM(57) 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7586669921875 2 511.757358 1021.50016 0.12584 6.4402E-05 0.46515 0.00023804 0.591 0.00030245 511.75798161769467 65.234 0.40672 64.749 64.511 64.918 -0.48428 37 18 3 0 0 0 0.026094 1 35608 35608 57.471 23.369 1 3562300 63176 6840 42023 42969 73789 73789 1184 -0.00972735485117937 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ TALESLIEM(1) TALESLIEM(64) 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7567443847656 2 511.757358 1021.50016 0.97916 0.00050109 -0.36334 -0.00018594 0.61582 0.00031515 511.7565490005352 71.573 0.66915 65.397 65.045 65.714 -6.1757 56 34 2 0 0 0 0.019303 1 46812 46812 64.236 24.279 1 41590000 63177 6840 42023 42969 73790 73790 1184 -0.00972735485117937 TALESLIEM 9 Oxidation (M) _TALESLIEM(Oxidation (M))_ 0 0 1 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 511.757358 1021.50016 1.0972 0.00056148 2.1377 0.001094 3.2348 0.0016554 512.2612151819726 64.462 0.21022 64.451 64.338 64.548 -0.010529 0.092012 0.0022748 NaN 71.134 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4061100 63178 6840 42023 42969 1184 -0.00972735485117937 TALESLIEM 9 Unmodified _TALESLIEM_ 0 0 0 ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1;ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF ENSG00000162191|ENST00000301935|UBXN1 ENSG00000162191|ENST00000301935|UBXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7594299316406 2 503.759901 1005.50525 0.73772 0.00037163 0.52211 0.00026302 1.2598 0.00063465 503.76019230084745 92.662 0.74964 86.486 86.005 86.754 -6.1757 78 46 2 0 0 0 0.019303 3 61067 61067;61190;61320 64.236 28.985 1 27174000 63179 6840 42023 42970 73791;73792;73793 73791 0.002715683775022626 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.5112915039062 1 956.50876 955.501483 0.050296 4.8108E-05 1.3545 0.0012956 1.4048 0.0013437 956.5097149363261 68.045 0.26993 68.045 67.914 68.184 0 24 13 3 0 0 0 0.038285 1 37925 37925 50.855 20.63 1 967220 63180 3388 42024 42971 73794 73794 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.5088500976562 1 956.50876 955.501483 0.30876 0.00029533 -0.058072 -5.5546E-05 0.25069 0.00023979 956.5085544699673 68.549 0.4587 68.068 67.85 68.309 -0.48071 57 20 4 0 0 0 0.0090851 2 37501 37403;37501 85.357 45.399 1 19606000 63181 3388 42024 42971 73795;73796 73796 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.75830078125 2 478.758018 955.501483 0.51261 0.00024542 -0.071783 -3.4367E-05 0.44083 0.00021105 478.75782238013187 68.567 0.5053 68.087 67.825 68.33 -0.48071 51 22 3 0 0 0 0.042911 2 37433 37433;37541 48.346 22.656 1 8277500 63182 3388 42024 42971 73797;73798 73797 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 956.509521484375 1 956.50876 955.501483 0.71083 0.00067992 -0.43114 -0.00041239 0.27969 0.00026753 956.5079284275812 68.091 0.30194 68.116 67.921 68.223 0.025146 22 14 2 0 0 0 0.026094 1 37349 37349 57.471 28.985 1 4645400 63183 3388 42024 42971 73799 73799 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20221201_MKP_PDAC_01 4 478.7597961425781 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 74.974 1 68.799 68.299 69.299 -6.1757 0 0 0 0.050352 1 49021 49021 57.471 35.725 1 63184 3388 42024 42971 73800 73800 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MSMS AL20221201_MKP_PDAC_01 4 478.7593688964844 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 75.153 1 68.978 68.478 69.478 -6.1757 0 0 0 0.035065 1 49143 49143 64.236 34.012 1 63185 3388 42024 42971 73801 73801 0.021952666659331044 TALFVAATY 9 Unmodified _TALFVAATY_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 478.758018 955.501483 0.41861 0.00020041 -0.57778 -0.00027662 -0.15917 -7.6206E-05 478.7580896597599 68.007 0.2066 68.032 67.941 68.148 0.025146 -0.018961 -0.00042152 NaN 48.346 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2471200 63186 3388 42024 42971 0.021952666659331044 TALGTKWS 8 Unmodified _TALGTKWS_ 0 0 0 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 863.4613037109375 1 863.462144 862.454868 0.43436 0.00037505 -0.21636 -0.00018681 0.21801 0.00018824 863.4615693764497 36.27 0.10102 36.27 36.229 36.33 0 8 4 2 0 0 0 0.1875 1 19235 19235 74.929 13.572 1 1740100 + 63187 20912 42025 42972 73802 73802 0.018138268346547193 TALGTKWS 8 Unmodified _TALGTKWS_ 0 0 0 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 863.462144 862.454868 0.99179 0.00085638 0.51894 0.00044809 1.5107 0.0013045 863.4625223509391 40.832 0.33624 36.303 36.13 36.466 -4.5294 0.016124 9.2469E-05 NaN 74.929 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 6890000 + 63188 20912 42025 42972 0.018138268346547193 TALHEAALY 9 Unmodified _TALHEAALY_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7583923339844 2 494.758549 987.502546 0.12667 6.2671E-05 0.59197 0.00029288 0.71864 0.00035555 494.7588748607125 37.634 0.25345 37.634 37.51 37.764 0 30 12 3 0 0 0 0.010877 1 20016 20016 77.984 31.063 1 10170000 63189 8674 42026 42973 73803 73803 0.008294810348502324 TALHEAALY 9 Unmodified _TALHEAALY_ 0 0 0 nc|ENSG00000177303|Q8WXE0-2|CASKIN2;ENSG00000177303|ENST00000321617|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 nc|ENSG00000177303|Q8WXE0-2|CASKIN2 MSMS AL20221201_MKP_PDAC_01 4 494.7567138671875 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 42.669 1 37.984 37.484 38.484 -4.6846 0 0 0 0.050352 1 25804 25804 57.471 27.247 1 63190 8674 42026 42973 73804 73804 0.008294810348502324 TALHLATEM 9 Oxidation (M) _TALHLATEM(Oxidation (M))_ TALHLATEM(1) TALHLATEM(85) 0 0 1 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000473400.1_1_10:104160383-104160916:+|nuORF nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7499084472656 2 501.749867 1001.48518 -0.56689 -0.00028444 0.088435 4.4372E-05 -0.47845 -0.00024006 501.7502374909309 32.155 0.25829 32.155 32.002 32.261 0 27 12 3 0 0 0 0.0090851 1 16751 16751 85.357 38.436 1 4131600 63191 1206 42027 42974 73805 73805 202 -0.01550182562448299 TALHLATEM 9 Oxidation (M) _TALHLATEM(Oxidation (M))_ 0 0 1 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000473400.1_1_10:104160383-104160916:+|nuORF nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 501.749867 1001.48518 0.71881 0.00036066 -1.1145 -0.00055922 -0.39574 -0.00019856 502.25034996579996 36.602 0.25094 32.318 32.204 32.455 -4.2835 0.081643 -0.00086852 NaN 85.357 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 8021600 63192 1206 42027 42974 202 -0.01550182562448299 TALHLAVDL 9 Unmodified _TALHLAVDL_ 0 0 0 ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7766723632812 2 476.776742 951.538931 0.17083 8.1449E-05 0.3385 0.00016139 0.50934 0.00024284 476.77682716417223 65.461 0.32726 65.461 65.32 65.648 0 22 12 2 0 0 0 0.031062 1 36518 36518 54.774 24.549 1 1364400 63193 1888 42028 42975 73806 73806 0.06122357931565148 TALHLNDNY 9 Unmodified _TALHLNDNY_ 0 0 0 ENSG00000138767|ENST00000504123|CNOT6L;nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENST00000506166.1_1_4:78663390-78740391:-|nuORF ENSG00000138767|ENST00000504123|CNOT6L ENSG00000138767|ENST00000504123|CNOT6L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.75634765625 2 530.756538 1059.49852 0.74341 0.00039457 -2.006 -0.0010647 -1.2626 -0.00067011 530.7552316257945 36.765 0.18736 36.765 36.67 36.857 0 18 8 3 0 0 0 0.28023 1 19549 19549 18.146 12.386 1 1651100 63194 5102 42029 42976 73807 73807 -0.028846084588622034 TALKEEDGQVY 11 Unmodified _TALKEEDGQVY_ 0 0 0 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.805908203125 2 626.806425 1251.5983 -0.49147 -0.00030806 0.2428 0.00015219 -0.24867 -0.00015587 626.8067982524514 28.596 0.18033 28.596 28.503 28.683 0 17 8 3 0 0 0 0.23243 1 14781 14781 43.982 31.45 1 1824200 63195 4732 42030 42977 73808 73808 -0.017438356355796714 TALLLASKY 9 Unmodified _TALLLASKY_ 0 0 0 ENSG00000157456|ENST00000288207|CCNB2 ENSG00000157456|ENST00000288207|CCNB2 ENSG00000157456|ENST00000288207|CCNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2955017089844 2 490.294768 978.574983 NaN NaN NaN NaN NaN NaN NaN 51.986 1 51.927 51.427 52.427 -0.058918 0 0 0 0.26013 1 28152 28152 27.223 7.9662 1 63196 6521 42031 42978 73809 73809 0.08483815108422732 TALLSQVI 8 Unmodified _TALLSQVI_ 0 0 0 ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.7612915039062 2 422.760561 843.506569 0.54945 0.00023228 0.8732 0.00036916 1.4227 0.00060144 422.7608771787032 71.949 0.2528 71.473 71.319 71.572 -0.47609 16 9 2 0 0 0 0.40035 1 39376 39376 44.407 0 1 1030600 63197 14168 42032 42979 73810 73810 0.07855570528568023 TALLSQVI 8 Unmodified _TALLSQVI_ 0 0 0 ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.761474609375 2 422.760561 843.506569 NaN NaN NaN NaN NaN NaN NaN 79.089 1 72.913 72.413 73.413 -6.1757 0 0 0 0.4392 1 51813 51813 48.346 0 1 63198 14168 42032 42979 73811 73811 0.07855570528568023 TALLSQVI 8 Unmodified _TALLSQVI_ 0 0 0 ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF ENST00000485560.5_3_10:38146171-38146261:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.760561 843.506569 -0.25836 -0.00010923 1.185 0.00050099 0.92668 0.00039176 422.76111603565664 71.526 0.15325 71.526 71.421 71.574 0 0.02644 0.00017069 NaN 44.407 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 362940 63199 14168 42032 42979 0.07855570528568023 TALNILEKY 9 Unmodified _TALNILEKY_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;ENST00000560342.5_1_14:24616937-24618114:+|nuORF;ENST00000559275.5_2_14:24617205-24617900:+|nuORF ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.8043212890625 2 532.802957 1063.59136 0.3174 0.00016911 -0.075858 -4.0417E-05 0.24154 0.0001287 532.8028336280835 58.673 0.29424 58.673 58.535 58.829 0 30 12 3 0 0 0 0.0088668 1 32659 32659 87.258 31.755 1 6653900 63200 1605 42033 42980 73812 73812 0.062108962745242025 TALNILEKY 9 Unmodified _TALNILEKY_ 0 0 0 ENSG00000092098|ENST00000324103|RNF31;ENST00000560342.5_1_14:24616937-24618114:+|nuORF;ENST00000559275.5_2_14:24617205-24617900:+|nuORF ENSG00000092098|ENST00000324103|RNF31 ENSG00000092098|ENST00000324103|RNF31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8040771484375 2 532.802957 1063.59136 0.24355 0.00012976 1.3564 0.00072269 1.6 0.00085246 532.8034848975202 59.131 0.40176 58.64 58.391 58.792 -0.49079 43 18 3 0 0 0 0.018061 1 32155 32155 65.474 25.524 1 13226000 63201 1605 42033 42980 73813 73813 0.062108962745242025 TALNPHIGY 9 Unmodified _TALNPHIGY_ 0 0 0 nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH;ENST00000426255.6_1_5:33997237-33997321:-|nuORF nc|ENSG00000091483|P07954-2|FH nc|ENSG00000091483|P07954-2|FH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2587280273438 2 493.258717 984.50288 -0.23643 -0.00011662 -0.098649 -4.866E-05 -0.33508 -0.00016528 493.25878931584384 40.693 0.17394 40.693 40.584 40.758 0 22 9 3 0 0 0 0.052168 1 21883 21883 44.407 21.259 1 7328600 63202 1586 42034 42981 73814 73814 0.010009007547182591 TALNPHIGY 9 Unmodified _TALNPHIGY_ 0 0 0 nc|ENSG00000091483|P07954-2|FH;ENSG00000091483|ENST00000366560|FH;ENST00000426255.6_1_5:33997237-33997321:-|nuORF nc|ENSG00000091483|P07954-2|FH nc|ENSG00000091483|P07954-2|FH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2588500976562 2 493.258717 984.50288 0.40362 0.00019909 0.65282 0.00032201 1.0564 0.0005211 493.2592124479051 41.08 0.28669 40.776 40.678 40.964 -0.30304 26 13 3 0 0 0 0.087258 1 21754 21754 36.044 16.787 1 3091700 63203 1586 42034 42981 73815 73815 0.010009007547182591 TALPCWPAL 9 Unmodified _TALPCWPAL_ 0 0 0 REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF REV__ENST00000556883.1_1_14:93650993-93651212:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2555847167969 2 486.254588 970.494624 NaN NaN NaN NaN NaN NaN NaN 61.001 1 61.001 60.501 61.501 0 0 0 0 0.82015 1 34019 34019 5.2307 0 1 + 63204 28784 42035 42982 73816 73816 0.008196305137175841 TALPGPEVFSG 11 Unmodified _TALPGPEVFSG_ 0 0 0 ENST00000521747.5_1_7:11013677-11013836:+|nuORF ENST00000521747.5_1_7:11013677-11013836:+|nuORF ENST00000521747.5_1_7:11013677-11013836:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.77734375 2 537.776939 1073.53933 0.40766 0.00021923 -1.0228 -0.00055001 -0.6151 -0.00033078 537.7766863512205 63.946 0.27166 63.461 63.341 63.613 -0.48512 22 15 2 0 0 0 0.50515 1 34875 34875 16.149 0.30192 1 3507300 63205 14747 42036 42983 73817 73817 0.005497328607589225 TALPRIFSL 9 Unmodified _TALPRIFSL_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3086242675781 2 509.30821 1016.60187 0.39077 0.00019902 0.32611 0.00016609 0.71688 0.00036511 509.30842368159637 79.796 0.42272 79.851 79.625 80.047 0.054977 48 16 4 0 0 0 0.014182 2 44034 44034;44133 69.338 32.832 1 16586000 63206 7756 42037 42984 73818;73819 73818 0.09422923719591836 TALPRIFSL 9 Unmodified _TALPRIFSL_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.3089599609375 2 509.30821 1016.60187 1.3096 0.00066698 0.14455 7.362E-05 1.4541 0.0007406 509.30829636537027 97.462 0.33839 91.286 91.137 91.476 -6.1757 47 18 3 0 0 0 0.0088668 2 64537 64537;64652 87.258 34.99 1 91982000 63207 7756 42037 42984 73820;73821 73820 0.09422923719591836 TALQAFKF 8 Unmodified _TALQAFKF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2603149414062 2 463.260728 924.506903 0.35907 0.00016634 -0.083161 -3.8525E-05 0.27591 0.00012782 463.26076712639195 61.533 0.29541 61.5 61.355 61.65 -0.032787 27 14 3 0 0 0 0.17097 1 33566 33566 81.613 53.44 1 7682900 63208 550 42038 42985 73822 73822 0.04162990248414644 TALQAFKF 8 Unmodified _TALQAFKF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2611999511719 2 463.260728 924.506903 0.45439 0.0002105 -0.080318 -3.7208E-05 0.37407 0.00017329 463.2606376044422 66.634 0.34932 60.459 60.315 60.664 -6.1757 29 19 2 0 0 0 0.25522 1 43370 43370 61.357 36.684 1 19412000 63209 550 42038 42985 73823 73823 0.04162990248414644 TALQAIVEY 9 Unmodified _TALQAIVEY_ 0 0 0 ENSG00000179454|ENST00000396128|KLHL28;nc|ENSG00000179454|Q9NXS3-2|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 ENSG00000179454|ENST00000396128|KLHL28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2783813476562 2 504.274032 1006.53351 0.38999 0.00019666 2.2716 0.0011455 2.6615 0.0013422 504.2752398389434 65.382 0.42867 65.382 65.143 65.572 0 37 16 3 0 0 0 0.03568 2 36433 36433;36533 52.268 14.117 1 7016900 63210 8836 42039 42986 73824;73825 73824 0.030506343490742438 TALQLFDDF 9 Unmodified _TALQLFDDF_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2640380859375 2 535.263665 1068.51278 0.28088 0.00015034 0.8299 0.00044422 1.1108 0.00059456 535.2640612296582 94.186 0.3582 94.186 94.002 94.36 0 67 24 4 0 0 0 0.07916 2 52102 52004;52102 37.974 21.032 1 2710800 63211 2266 42040 42987 73826;73827 73827 -0.018739560305675695 TALQLFDDF 9 Unmodified _TALQLFDDF_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.26318359375 2 535.263665 1068.51278 0.33281 0.00017814 1.1407 0.00061058 1.4735 0.00078872 535.2636555385874 94.685 0.35268 94.265 94.094 94.447 -0.42044 48 17 3 0 0 0 0.047196 2 51686 51686;51779 46.021 22.873 1 2528400 63212 2266 42040 42987 73828;73829 73828 -0.018739560305675695 TALQLFDDF 9 Unmodified _TALQLFDDF_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 535.263665 1068.51278 1.1978 0.00064112 -1.6072 -0.00086028 -0.40945 -0.00021916 535.765346987679 100.18 0.0522 94.005 93.978 94.03 -6.1757 -0.14682 -0.0026843 NaN 46.021 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 22769000 63213 2266 42040 42987 -0.018739560305675695 TALQQFLL 8 Unmodified _TALQQFLL_ 0 0 0 REV__ENST00000220597.4_1_8:81905502-82024007:-|nuORF REV__ENST00000220597.4_1_8:81905502-82024007:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.77197265625 2 467.273835 932.533118 0.53307 0.00024909 -1.428 -0.00066725 -0.89489 -0.00041816 467.2738144722829 44.353 1.0335 39.501 39.215 40.249 -4.852 145 76 3 0 0 0 0.67481 1 27302 27302 19.439 1.304 1 70054000 + 63214 24759 42041 42988 73830 73830 0.06415259419895847 TALQRVDLF 9 Unmodified _TALQRVDLF_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2823486328125 2 531.800749 1061.58694 -0.23069 -0.00012268 1.0927 0.00058111 0.86204 0.00045843 531.8007280483886 60.81 0.18542 60.32 60.189 60.374 -0.48932 12 8 2 0 0 0 0.17729 1 33075 33075 21.537 4.4241 1 3153300 63215 2385 42042 42989 73831 73831 0.058614318515992636 TALRALSDSAV 11 Unmodified _TALRALSDSAV_ 0 0 0 ENSG00000144218|ENST00000672756|AFF3;nc|ENSG00000144218|P51826-2|AFF3 ENSG00000144218|ENST00000672756|AFF3 ENSG00000144218|ENST00000672756|AFF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3046264648438 2 552.306395 1102.59824 0.94154 0.00052002 -2.7298 -0.0015077 -1.7882 -0.00098764 552.3051620901325 47.237 0.25808 47.203 47.087 47.346 -0.033417 22 12 2 0 0 0 0.25654 1 25444 25444 29.082 0.59474 1 3320400 63216 5589 42043 42990 73832 73832 0.05104209155092576 TALRAPVR 8 Unmodified _TALRAPVR_ 0 0 0 ENST00000523812.1_1_8:144357822-144358971:+|nuORF ENST00000523812.1_1_8:144357822-144358971:+|nuORF ENST00000523812.1_1_8:144357822-144358971:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2771606445312 2 442.277244 882.539935 NaN NaN NaN NaN NaN NaN NaN 54.395 1 53.928 53.428 54.428 -0.46664 0 0 0 0.57076 1 29474 29474 36.044 1.9418 1 63217 14769 42044 42991 73833 73833 0.09396617091124426 TALRLITAL 9 Unmodified _TALRLITAL_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3161315917969 2 486.316035 970.617516 1.0455 0.00050845 1.3653 0.00066399 2.4109 0.0011724 486.3165063388168 70.564 0.29694 70.6 70.444 70.741 0.035507 25 13 3 0 0 0 0.026499 1 38853 38853 57.249 11.549 1 2545300 63218 2877 42045 42992 73834 73834 0.13103210236636187 TALRPVLI 8 Unmodified _TALRPVLI_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000459739.5_1_10:79553706-79569486:-|nuORF ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7927551269531 2 441.792195 881.569838 0.68869 0.00030426 0.42913 0.00018959 1.1178 0.00049385 441.7921822208636 66.48 0.36668 60.304 60.137 60.503 -6.1757 29 20 2 0 0 0 0.54555 1 43238 43238 30.637 0 1 11474000 63219 6097 42046 42993 73835 73835 0.12431556036472102 TALRSVEL 8 Unmodified _TALRSVEL_ 0 0 0 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 MSMS AL20221201_MKP_PDAC_01 4 444.7620239257812 2 444.761092 887.507631 NaN NaN NaN NaN NaN NaN NaN 46.496 1 41.415 40.915 41.915 -5.0805 0 0 0 0.48108 1 28732 28732 41.956 10.687 1 63220 7234 42047 42994 73836 73836 0.059377848974691005 TALSEDEYF 9 Unmodified _TALSEDEYF_ 0 0 0 ENST00000411772.5_2_15:43699583-43738985:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000572085.5_1_15:43707600-43785241:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF ENST00000411772.5_2_15:43699583-43738985:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.734619140625 2 537.734937 1073.45532 1.3037 0.00070105 -0.8604 -0.00046267 0.44331 0.00023838 537.7349585690915 33.875 0.59481 29.89 29.589 30.184 -3.9853 94 32 4 0 0 0 0.39863 1 19334 19334 12.532 0 1 74243000 63221 958 42048 42995 73837 73837 -0.07846843026800343 TALSFALCVLF 11 Unmodified _TALSFALCVLF_ 0 0 0 REV__ENST00000491877.1_1_X:149984920-150067073:-|nuORF REV__ENST00000491877.1_1_X:149984920-150067073:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8239135742188 2 592.822835 1183.63112 0.90941 0.00053912 -2.093 -0.0012408 -1.1836 -0.00070168 592.821037368449 61.571 0.44555 55.395 55.248 55.693 -6.1757 38 22 2 0 0 0 0.4121 1 39613 39613 32.786 13.529 1 51020000 + 63222 18225 42049 42996 73838 73838 0.04664699953582385 TALSHPLLY 9 Unmodified _TALSHPLLY_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7844543457031 2 507.784567 1013.55458 -0.43802 -0.00022242 -0.17697 -8.9863E-05 -0.61499 -0.00031228 507.784506163572 51.343 0.2894 50.929 50.738 51.028 -0.41351 33 14 3 0 0 0 0.012148 1 27685 27685 74.423 56.288 1 14094000 63223 4927 42050 42997 73839 73839 0.04834644448612835 TALSHPLLY 9 Unmodified _TALSHPLLY_ 0 0 0 nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 nc|ENSG00000137409|Q9NZJ7-2|MTCH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7480773925781 2 507.784567 1013.55458 0.41389 0.00021017 -3.0441 -0.0015458 -2.6303 -0.0013356 507.78334909549045 56.767 0.44962 50.79 50.542 50.992 -5.9769 50 25 3 0 0 0 0.16418 1 36201 36201 25.399 7.2643 1 39226000 63224 4927 42050 42997 73840 73840 0.04834644448612835 TALVQSIL 8 Unmodified _TALVQSIL_ 0 0 0 REV__nc|ENSG00000198870|Q8NE28-2|STKLD1 REV__nc|ENSG00000198870|Q8NE28-2|STKLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7610473632812 2 422.760561 843.506569 -0.25836 -0.00010923 1.185 0.00050099 0.92668 0.00039176 422.76111603565664 71.526 0.15325 71.526 71.421 71.574 0 8 6 2 0 0 0 0.80143 1 39862 39862 5.7604 0 1 362940 + 63225 24084 42051 42998 73841 73841 0.07855570528568023 TAMDAQEAL 9 Oxidation (M) _TAM(Oxidation (M))DAQEAL_ TAM(1)DAQEAL TAM(64)DAQEAL 0 0 1 ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENSG00000111011|ENST00000331738|RSRC2 ENST00000433877.6_1_12:122990076-123005058:-|nuORF ENST00000433877.6_1_12:122990076-123005058:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2155456542969 2 483.215857 964.417161 -0.47736 -0.00023067 -0.073762 -3.5643E-05 -0.55112 -0.00026631 483.21614268693077 27.566 0.37901 27.566 27.362 27.741 0 40 18 3 0 0 0 0.019303 2 14153 14153;14254 64.236 26.869 1 3068100 63226 2758 42052 42999 73842;73843 73842 478 -0.06647052213122606 TAMDAQEAL 9 Unmodified _TAMDAQEAL_ 0 0 0 ENST00000433877.6_1_12:122990076-123005058:-|nuORF;nc|ENSG00000111011|Q7L4I2-2|RSRC2;ENSG00000111011|ENST00000331738|RSRC2 ENST00000433877.6_1_12:122990076-123005058:-|nuORF ENST00000433877.6_1_12:122990076-123005058:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2185363769531 2 475.2184 948.422247 0.48296 0.00022951 -0.18121 -8.6112E-05 0.30176 0.0001434 475.2182196185865 45.442 0.33608 40.487 40.32 40.656 -4.9549 39 22 2 0 0 0 0.019303 1 27964 27964 64.236 18.215 1 19656000 63227 2758 42052 43000 73844 73844 -0.05402748350513775 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(78)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7465515136719 2 499.746793 997.479033 0.5218 0.00026077 -1.117 -0.00055823 -0.59522 -0.00029746 499.74635403807457 59.445 0.55095 59.445 59.004 59.555 0 78 23 6 0 0 0 0.010877 2 33128 33020;33128 77.984 38.027 1 203640000 63228 6581 42053 43001 73845;73846 73846 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(67)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.4859008789062 1 998.48631 997.479033 0.10876 0.0001086 -0.66225 -0.00066125 -0.55348 -0.00055265 998.4858727562101 59.427 0.35952 59.427 59.217 59.577 0 60 15 5 0 0 0 0.016184 2 33127 33022;33127 67.344 31.3 1 54997000 63229 6581 42053 43001 73847;73848 73848 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(85)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.4861450195312 1 998.48631 997.479033 0.19679 0.0001965 -0.80967 -0.00080844 -0.61287 -0.00061195 998.4857707498818 59.704 0.46842 59.704 59.555 60.023 0 68 21 5 0 0 0 0.0090851 2 33354 33237;33354 85.357 49.23 1 69892000 63230 6581 42053 43001 73849;73850 73850 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(89)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7469177246094 2 499.746793 997.479033 0.61057 0.00030513 -1.176 -0.0005877 -0.56541 -0.00028256 499.74628845717933 59.724 0.53533 59.724 59.51 60.046 0 87 24 5 0 0 0 0.0086179 1 33238 33238 89.427 49.469 1 229980000 63231 6581 42053 43001 73851 73851 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(57)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7459411621094 2 499.746793 997.479033 -0.0046189 -2.3083E-06 -0.87803 -0.00043879 -0.88265 -0.0004411 499.746530885611 59.983 0.33905 59.492 59.313 59.652 -0.49079 45 16 4 0 0 0 0.026094 2 32594 32594;32699 57.471 28.985 1 12478000 63232 6581 42053 43001 73852;73853 73852 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(78)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7467041015625 2 499.746793 997.479033 -0.12529 -6.2615E-05 -0.24885 -0.00012436 -0.37415 -0.00018698 499.74676833998956 60.276 0.27561 59.785 59.63 59.906 -0.49079 36 13 3 0 0 0 0.010877 1 32804 32804 77.984 41.94 1 13640000 63233 6581 42053 43001 73854 73854 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(48)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 998.4867553710938 1 998.48631 997.479033 -0.046786 -4.6715E-05 -0.59535 -0.00059445 -0.64213 -0.00064116 998.4856784475152 60.253 0.25323 59.762 59.652 59.906 -0.49079 20 12 2 0 0 0 0.042911 1 32826 32826 48.346 19.859 1 4399000 63234 6581 42053 43001 73855 73855 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(60)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7471008300781 2 499.746793 997.479033 0.32482 0.00016233 1.358 0.00067867 1.6828 0.000841 499.7475697790065 59.658 0.2541 59.605 59.44 59.694 -0.053062 21 12 2 0 0 0 0.023164 1 32504 32504 60.39 31.903 1 7173600 63235 6581 42053 43001 73856 73856 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(57)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7464599609375 2 499.746793 997.479033 0.33356 0.00016669 0.61426 0.00030697 0.94781 0.00047367 499.7472899677069 59.882 0.28273 59.829 59.694 59.977 -0.053062 23 13 2 0 0 0 0.026094 1 32675 32675 57.471 17.514 1 4428800 63236 6581 42053 43001 73857 73857 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(89)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7478942871094 2 499.746793 997.479033 0.85068 0.00042512 -0.73608 -0.00036785 0.1146 5.7271E-05 499.7473130620725 67.489 1.1759 61.314 60.73 61.906 -6.1757 163 66 5 0 0 0 0.0086179 4 43645 43645;43779;43907;44041 89.427 49.469 1 177670000 63237 6581 42053 43001 73858;73859;73860;73861 73858 1151 -0.019807007939675714 TAMDVVYAL 9 Oxidation (M) _TAM(Oxidation (M))DVVYAL_ TAM(1)DVVYAL TAM(64)DVVYAL 0 0 1 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.4866943359375 1 998.48631 997.479033 0.6045 0.00060358 -1.215 -0.0012131 -0.61047 -0.00060955 998.4844880442974 67.487 0.67116 61.311 60.808 61.48 -6.1757 85 37 3 0 0 0 0.019303 2 43673 43673;43802 64.236 28.109 1 32717000 63238 6581 42053 43001 73862;73863 73862 1151 -0.019807007939675714 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7492370605469 2 491.749336 981.484119 0.30032 0.00014768 -0.48576 -0.00023887 -0.18544 -9.1191E-05 491.7491715184123 75.024 0.53931 75.024 74.803 75.343 0 105 31 4 0 0 0 0.038285 2 41769 41670;41769 50.855 26.181 1 26121000 63239 6581 42053 43002 73864;73865 73865 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 982.4910888671875 1 982.491395 981.484119 0.20193 0.0001984 -0.73105 -0.00071825 -0.52912 -0.00051986 982.4908921357614 75.01 0.42776 75.01 74.847 75.275 0 80 26 4 0 0 0 0.016184 3 41767 41672;41767;41871 67.344 31.3 1 11347000 63240 6581 42053 43002 73866;73867;73868 73867 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7498474121094 2 491.749336 981.484119 0.89848 0.00044183 -0.77024 -0.00037877 0.12824 6.3061E-05 491.74903779111827 75.516 0.43167 75.039 74.844 75.276 -0.47714 73 23 4 0 0 0 0.013472 2 41371 41267;41371 70.716 42.229 1 15607000 63241 6581 42053 43002 73869;73870 73870 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 982.4921264648438 1 982.491395 981.484119 0.61804 0.00060722 -0.59898 -0.00058849 0.019058 1.8724E-05 982.4910246696462 75.551 0.37018 75.074 74.864 75.235 -0.47714 52 20 4 0 0 0 0.016184 1 41382 41382 67.344 33.241 1 8600400 63242 6581 42053 43002 73871 73871 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7496948242188 2 491.749336 981.484119 0.90693 0.00044598 -0.33131 -0.00016292 0.57562 0.00028306 491.74920992180574 83.216 0.92086 77.04 76.608 77.528 -6.1757 227 49 6 0 0 0 0.010877 5 54627 54492;54627;54751;54880;55003 77.984 38.027 1 838600000 63243 6581 42053 43002 73872;73873;73874;73875;73876 73873 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.492431640625 1 982.491395 981.484119 0.90377 0.00088795 -0.68335 -0.00067139 0.22042 0.00021656 982.4909681842167 83.21 0.72713 77.034 76.715 77.442 -6.1757 172 38 6 0 0 0 0.012148 4 54905 54511;54652;54784;54905 74.423 23.568 1 283010000 63244 6581 42053 43002 73877;73878;73879;73880 73880 -0.007363969313587404 TAMDVVYAL 9 Unmodified _TAMDVVYAL_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 491.749336 981.484119 0.53166 0.00026144 -0.64481 -0.00031708 -0.11315 -5.5641E-05 491.74905525140974 74.975 0.24763 75.021 74.899 75.147 0.045967 -0.0068216 -3.4577E-05 NaN 70.716 18 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3070500 63245 6581 42053 43002 -0.007363969313587404 TAMEILNEF 9 Unmodified _TAMEILNEF_ 0 0 0 ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 ENSG00000134899|ENST00000652225|ERCC5 MSMS AL20221201_MKP_PDAC_01 4 534.2564086914062 2 534.257525 1066.5005 NaN NaN NaN NaN NaN NaN NaN 92.072 1 85.896 85.396 86.396 -6.1757 0 0 0 0.059498 1 60880 60880 53.833 19.73 1 63246 4650 42054 43003 73881 73881 -0.030093157652800073 TAMFIASKY 9 Oxidation (M) _TAM(Oxidation (M))FIASKY_ TAM(1)FIASKY TAM(65)FIASKY 0 0 1 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.26220703125 2 524.26261 1046.51067 -0.087784 -4.6022E-05 0.95356 0.00049992 0.86578 0.00045389 524.26326298475 38.436 0.26214 38.149 37.977 38.239 -0.28687 29 11 4 0 0 0 0.018061 1 20188 20188 65.474 43.727 1 8810800 63247 4553 42055 43004 73882 73882 831 -0.010727080400329214 TAMFIASKY 9 Unmodified _TAMFIASKY_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2657470703125 2 516.265153 1030.51575 1.0374 0.0005356 -0.60186 -0.00031072 0.43559 0.00022488 516.2643513588348 53.533 0.35606 47.729 47.562 47.918 -5.8042 55 22 3 0 0 0 0.053952 1 33818 33818 43.982 19.961 1 84717000 63248 4553 42055 43005 73883 73883 0.0017159582259864692 TAMGMIIDVF 10 Oxidation (M) _TAMGM(Oxidation (M))IIDVF_ TAM(0.041)GM(0.959)IIDVF TAM(-14)GM(14)IIDVF 0 0 1 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2705688476562 2 557.269578 1112.5246 0.96751 0.00053916 -0.030129 -1.679E-05 0.93738 0.00052237 557.2693658203877 99.525 0.22012 93.349 93.228 93.448 -6.1757 23 13 2 0 0 0 0.1028 1 66320 66320 46.021 29.079 2 30288000 63249 7111 42056 43006 73884 73884 1224 -0.02715798603253461 TAMLWCEL 8 Unmodified _TAMLWCEL_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7244873046875 2 483.724806 965.43506 -0.33488 -0.00016199 0.35536 0.0001719 0.020478 9.9058E-06 483.72502295172194 41.214 0.31895 41.214 41.045 41.364 0 24 15 2 0 0 0 0.72953 1 22187 22187 14.582 1.0738 1 3864500 63250 6322 42057 43007 73885 73885 -0.04904008491951117 TAMPYLTSY 9 Unmodified _TAMPYLTSY_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MSMS AL20221201_MKP_PDAC_01 4 523.7470092773438 2 523.746793 1045.47903 NaN NaN NaN NaN NaN NaN NaN 70.121 1 63.945 63.445 64.445 -6.1757 0 0 0 0.20153 1 45810 45810 30.637 13.694 1 63251 10096 42058 43008 73886 73886 -0.04188700793974931 TAMTVQILL 9 Unmodified _TAMTVQILL_ 0 0 0 ENST00000598969.5_1_19:19010490-19016602:-|nuORF;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE;nc|ENSG00000105669|O14579-3|COPE ENST00000598969.5_1_19:19010490-19016602:-|nuORF ENST00000598969.5_1_19:19010490-19016602:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2890625 2 495.288628 988.562703 1.323 0.00065528 1.3606 0.00067388 2.6836 0.0013292 495.2888268750478 95.985 0.62372 89.809 89.383 90.007 -6.1757 53 38 2 0 0 0 0.0090948 2 63392 63392;63527 85.272 23.915 1 10572000 63252 2349 42059 43009 73887;73888 73887 0.06796455373739718 TAMVVGPAGSD 11 Unmodified _TAMVVGPAGSD_ 0 0 0 REV__ENST00000388768.6_2_10:70166722-70166869:-|nuORF REV__ENST00000388768.6_2_10:70166722-70166869:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7403259277344 2 502.739499 1003.46445 0.98223 0.00049381 1.3778 0.00069268 2.36 0.0011865 502.7400018998824 83.209 0.53329 77.033 76.79 77.323 -6.1757 73 28 4 0 0 0 0.42108 1 54630 54630 20.415 1.1575 1 37182000 + 63253 26354 42060 43010 73889 73889 -0.03714772942100808 TANALALAM 9 Oxidation (M) _TANALALAM(Oxidation (M))_ TANALALAM(1) TANALALAM(160) 0 0 1 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.4632568359375 1 891.460429 890.453153 -0.45761 -0.00040794 1.2897 0.0011497 0.83211 0.00074179 891.4618482504497 44.818 0.29527 44.818 44.664 44.959 0 26 15 2 0 0 0 2.1289E-06 1 24348 24348 158.2 68.776 1 26899000 63254 5417 42061 43011 73890 73890 996 0.003544497544112346 TANALALAM 9 Oxidation (M) _TANALALAM(Oxidation (M))_ TANALALAM(1) TANALALAM(120) 0 0 1 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.2344360351562 2 446.233853 890.453153 -0.16629 -7.4204E-05 0.0090208 4.0254E-06 -0.15727 -7.0179E-05 446.2339144842854 44.793 0.34643 44.793 44.629 44.976 0 41 18 3 0 0 0 0.0055767 2 24351 24351;24461 115.69 52.129 1 53796000 63255 5417 42061 43011 73891;73892 73891 996 0.003544497544112346 TANALALAM 9 Oxidation (M) _TANALALAM(Oxidation (M))_ TANALALAM(1) TANALALAM(120) 0 0 1 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2344360351562 2 446.233853 890.453153 0.55208 0.00024636 0.82195 0.00036678 1.374 0.00061314 446.2343188626345 51.979 0.38696 46.245 46.035 46.422 -5.7345 43 26 2 0 0 0 0.0055767 2 32875 32735;32875 115.69 48.348 1 86035000 63256 5417 42061 43011 73893;73894 73894 996 0.003544497544112346 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2362365722656 2 438.236396 874.458238 NaN NaN NaN NaN NaN NaN NaN 64.288 1 64.288 63.788 64.788 0 0 0 0 0.76439 1 35851 35851 7.2892 2.5332 1 63257 5417 42061 43012 73895 73895 0.015987536170200656 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 875.4654541015625 1 875.465515 874.458238 -0.1029 -9.0086E-05 0.0221 1.9348E-05 -0.0808 -7.0738E-05 875.4659603971327 64.725 0.27812 64.24 64.081 64.359 -0.48512 24 12 3 0 0 0 0.020973 1 35281 35281 62.573 15.652 1 2700100 63258 5417 42061 43012 73896 73896 0.015987536170200656 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2359924316406 2 438.236396 874.458238 0.482 0.00021123 -0.44567 -0.00019531 0.036324 1.5918E-05 438.2361001181825 64.712 0.32164 64.227 64.059 64.381 -0.48512 24 14 2 0 0 0 0.039985 1 35290 35290 49.933 17.816 1 1577300 63259 5417 42061 43012 73897 73897 0.015987536170200656 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 875.4662475585938 1 875.465515 874.458238 1.1841 0.0010366 -0.73385 -0.00064246 0.4502 0.00039414 875.4651969985371 71.329 0.44656 65.154 64.921 65.367 -6.1757 53 21 3 0 0 0 0.0082353 4 46621 46501;46587;46621;46739 107.19 39.843 1 86713000 63260 5417 42061 43012 73898;73899;73900;73901 73900 0.015987536170200656 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2366027832031 2 438.236396 874.458238 1.278 0.00056007 -0.73251 -0.00032101 0.54551 0.00023906 438.236169741912 71.283 0.54237 65.108 64.9 65.443 -6.1757 55 26 3 0 0 0 0.0086904 2 46524 46524;46636 107.19 29.203 1 76897000 63261 5417 42061 43012 73902;73903 73902 0.015987536170200656 TANALALAM 9 Unmodified _TANALALAM_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6;ENST00000575643.1_1_17:4701246-4701714:+|nuORF ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 875.465515 874.458238 0.099443 8.7059E-05 0.46788 0.00040962 0.56733 0.00049668 875.4661559079519 64.259 0.15152 64.259 64.214 64.365 0 0.0095561 0.00033605 NaN 62.573 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 410570 63262 5417 42061 43012 0.015987536170200656 TANAVLLLL 9 Unmodified _TANAVLLLL_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 927.5877075195312 1 927.587344 926.580068 0.25905 0.00024029 0.36431 0.00033793 0.62336 0.00057822 927.5877214139181 99.432 0.25301 99.275 99.124 99.377 -0.1575 16 8 3 0 0 0 0.0086904 1 54276 54276 107.19 2.3878 1 5072300 63263 3393 42062 43013 73904 73904 0.11384118971056978 TANAVLLLL 9 Unmodified _TANAVLLLL_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2974853515625 2 464.29731 926.580068 0.21517 9.9903E-05 0.40248 0.00018687 0.61765 0.00028677 464.29749044772564 99.44 0.19675 99.283 99.18 99.377 -0.1575 19 6 4 0 0 0 0.0082661 1 54279 54279 92.491 14.342 1 8089800 63264 3393 42062 43013 73905 73905 0.11384118971056978 TANAVLLLL 9 Unmodified _TANAVLLLL_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 927.5906372070312 1 927.587344 926.580068 4.3585 0.0040428 -1.6902 -0.0015678 2.6682 0.002475 927.5854382058402 99.29 0.2248 99.261 99.108 99.332 -0.028282 11 7 2 0 0 0 0.0044708 1 55130 55130 118.89 14.096 1 13366000 63265 3393 42062 43013 73906 73906 0.11384118971056978 TANAVLLLL 9 Unmodified _TANAVLLLL_ 0 0 0 nc|ENSG00000118777|Q9UNQ0-2|ABCG2;ENSG00000118777|ENST00000237612|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 nc|ENSG00000118777|Q9UNQ0-2|ABCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.5877685546875 1 927.587344 926.580068 1.3148 0.0012196 -3.6977E-05 -3.4299E-08 1.3148 0.0012196 927.5871793824655 101.07 0.12521 94.899 94.831 94.956 -6.1757 16 6 3 0 0 0 0.0086904 1 67728 67728 107.19 11.076 1 109080000 63266 3393 42062 43013 73907 73907 0.11384118971056978 TANCLTVTF 9 Carbamidomethyl (C) _TANC(Carbamidomethyl (C))LTVTF_ TANC(1)LTVTF TANC(52)LTVTF 0 1 0 ENSG00000141582|ENST00000269397|CBX4;nc|ENSG00000141582|O00257-3|CBX4 ENSG00000141582|ENST00000269397|CBX4 ENSG00000141582|ENST00000269397|CBX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.749267578125 2 513.749867 1025.48518 0.5841 0.00030008 0.09153 4.7024E-05 0.67563 0.00034711 513.750020195705 69.686 0.29059 63.51 63.394 63.685 -6.1757 26 15 2 0 0 0 0.036857 1 45536 45536 51.63 9.7902 1 36108000 63267 5359 42063 43014 73908 73908 550 -0.026541825624462945 TANEIGQVL 9 Unmodified _TANEIGQVL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5;nc|ENSG00000206075|P36952-2|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7563171386719 2 472.756007 943.497461 0.13503 6.3838E-05 0.75619 0.00035749 0.89122 0.00042133 472.7561600337571 52.363 0.26559 52.363 52.243 52.508 0 21 11 2 0 0 0 0.009483 1 28980 28980 81.89 41.933 1 2016700 63268 10392 42064 43015 73909 73909 0.023451771722420744 TANNDHTVL 9 Unmodified _TANNDHTVL_ 0 0 0 nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-5|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 MSMS AL20221201_MKP_PDAC_01 4 492.7395935058594 2 492.740888 983.467223 NaN NaN NaN NaN NaN NaN NaN 24.899 1 22.016 21.516 22.516 -2.8831 0 0 0 0.12343 1 13585 13585 39.95 9.3132 1 63269 4410 42065 43016 73910 73910 -0.025171814929535685 TANPVAYGPF 10 Unmodified _TANPVAYGPF_ 0 0 0 REV__nc|ENSG00000148584|Q9NQ94-5|A1CF REV__nc|ENSG00000148584|Q9NQ94-5|A1CF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7598876953125 2 518.758549 1035.50255 -0.1822 -9.4516E-05 1.2351 0.00064074 1.0529 0.00054622 518.7590310110706 37.554 0.30785 37.283 37.092 37.4 -0.27133 25 12 3 0 0 0 0.5905 1 19729 19729 11.64 0 1 3073100 + 63270 20959 42066 43017 73911 73911 -0.013785189651571272 TANPVAYGPF 10 Unmodified _TANPVAYGPF_ 0 0 0 REV__nc|ENSG00000148584|Q9NQ94-5|A1CF REV__nc|ENSG00000148584|Q9NQ94-5|A1CF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.758549 1035.50255 -0.1822 -9.4516E-05 1.2351 0.00064074 1.0529 0.00054622 518.7590310110706 37.554 0.30785 37.283 37.092 37.4 -0.27133 0 0 NaN 11.64 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3073100 + 63271 20959 42066 43017 -0.013785189651571272 TANQASDTF 9 Unmodified _TANQASDTF_ 0 0 0 ENSG00000148671|ENST00000372013|ADIRF ENSG00000148671|ENST00000372013|ADIRF ENSG00000148671|ENST00000372013|ADIRF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.711669921875 2 477.711796 953.40904 NaN NaN NaN NaN NaN NaN NaN 25.661 1 25.661 25.161 26.161 0 0 0 0 0.6557 1 13164 13164 10.824 2.9138 1 63272 5951 42067 43018 73912 73912 -0.06952863138224075 TANSITVTF 9 Unmodified _TANSITVTF_ 0 0 0 ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7 ENST00000490741.1_1_22:39529898-39530769:-|nuORF ENST00000490741.1_1_22:39529898-39530769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.25048828125 2 477.250557 952.486562 0.62959 0.00030047 0.40683 0.00019416 1.0364 0.00049464 477.2506987976615 60.108 0.40275 60.108 59.943 60.345 0 28 17 2 0 0 0 0.044011 1 33496 33496 47.749 31.902 1 2824700 63273 1791 42068 43019 73913 73913 0.008417747979592605 TANSITVTF 9 Unmodified _TANSITVTF_ 0 0 0 ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7 ENST00000490741.1_1_22:39529898-39530769:-|nuORF ENST00000490741.1_1_22:39529898-39530769:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2503662109375 2 477.250557 952.486562 0.0051353 2.4508E-06 0.219 0.00010452 0.22414 0.00010697 477.25062089515217 60.638 0.30148 60.149 59.99 60.291 -0.48932 31 14 3 0 0 0 0.028475 2 32988 32988;33095 56.177 29.293 1 5584400 63274 1791 42068 43019 73914;73915 73914 0.008417747979592605 TANSITVTF 9 Unmodified _TANSITVTF_ 0 0 0 ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7 ENST00000490741.1_1_22:39529898-39530769:-|nuORF ENST00000490741.1_1_22:39529898-39530769:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2507629394531 2 477.250557 952.486562 0.7073 0.00033756 0.15465 7.3809E-05 0.86195 0.00041137 477.25061387567604 67.595 0.47247 61.419 61.146 61.618 -6.1757 47 26 2 0 0 0 0.028475 2 43962 43962;44098 56.177 23.872 1 51169000 63275 1791 42068 43019 73916;73917 73916 0.008417747979592605 TANSITVTF 9 Unmodified _TANSITVTF_ 0 0 0 ENST00000490741.1_1_22:39529898-39530769:-|nuORF;ENSG00000100307|ENST00000216133|CBX7 ENST00000490741.1_1_22:39529898-39530769:-|nuORF ENST00000490741.1_1_22:39529898-39530769:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.4935302734375 1 953.493838 952.486562 0.45826 0.00043695 -0.42899 -0.00040904 0.029268 2.7907E-05 953.4935995315532 67.599 0.34928 61.424 61.217 61.567 -6.1757 33 19 2 0 0 0 0.0082475 2 43967 43967;44093 92.653 36.476 1 16618000 63276 1791 42068 43019 73918;73919 73918 0.008417747979592605 TAPAERRMDWA 11 Unmodified _TAPAERRMDWA_ 0 0 0 REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.314453125 2 652.314229 1302.6139 0.074116 4.8347E-05 0.8207 0.00053535 0.89482 0.0005837 652.3148032541511 54.329 0.22243 53.863 53.803 54.025 -0.46664 15 11 2 0 0 0 0.5229 1 29440 29440 15.248 3.0078 1 3465900 + 63277 29331 42069 43020 73920 73920 -0.02529827599505552 TAPAERRMDWA 11 Unmodified _TAPAERRMDWA_ 0 0 0 REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.3173217773438 2 652.314229 1302.6139 0.21263 0.0001387 3.0722 0.0020041 3.2849 0.0021428 652.3162805152798 54.056 0.23987 53.989 53.882 54.122 -0.066936 21 11 2 0 0 0 0.5229 1 29336 29336 15.248 0.41021 1 3061200 + 63278 29331 42069 43020 73921 73921 -0.02529827599505552 TAPAERRMDWA 11 Unmodified _TAPAERRMDWA_ 0 0 0 REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF REV__ENST00000609438.1_1_4:90171359-90228902:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 652.314229 1302.6139 0.21263 0.0001387 3.0722 0.0020041 3.2849 0.0021428 652.3162805152798 54.056 0.23987 53.989 53.882 54.122 -0.066936 0.063001 0.00091214 NaN 15.248 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3061200 + 63279 29331 42069 43020 -0.02529827599505552 TAPDMFEES 9 Unmodified _TAPDMFEES_ 0 0 0 REV__ENSG00000164645|ENST00000297203|TEX47 REV__ENSG00000164645|ENST00000297203|TEX47 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.6806030273438 2 513.707865 1025.40118 -0.88745 -0.00045589 0.046937 2.4112E-05 -0.84052 -0.00043178 513.707788003929 32.264 0.25027 32.264 32.084 32.334 0 22 12 2 0 0 0 0.19613 1 16848 16848 7.9102 0 1 3369000 + 63280 21935 42070 43021 73922 73922 -0.11050758450028297 TAPDREVL 8 Unmodified _TAPDREVL_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7436218261719 2 450.742899 899.471246 1.0436 0.00047039 1.6614 0.00074887 2.705 0.0012193 450.7431724988728 40.66 0.25704 36.13 36.001 36.258 -4.5294 22 15 2 0 0 0 0.42423 1 24361 24361 42.095 5.9675 1 6883800 + 63281 20317 42071 43022 73923 73923 0.017489080007635494 TAPEEWPQRF 10 Unmodified _TAPEEWPQRF_ 0 0 0 ENST00000583268.1_1_17:38412646-38433335:+|nuORF ENST00000583268.1_1_17:38412646-38433335:+|nuORF ENST00000583268.1_1_17:38412646-38433335:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8062133789062 2 630.80402 1259.59349 NaN NaN NaN NaN NaN NaN NaN 99.142 1 99.114 98.614 99.614 -0.028282 0 0 0 0.92825 1 55065 55065 6.7232 3.1267 1 63282 15582 42072 43023 73924 73924 -0.025926749876816757 TAPGEVPALS 10 Unmodified _TAPGEVPALS_ 0 0 0 ENSG00000113083|ENST00000231004|LOX ENSG00000113083|ENST00000231004|LOX ENSG00000113083|ENST00000231004|LOX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.4929809570312 1 941.493838 940.486562 -0.49998 -0.00047073 -0.7771 -0.00073163 -1.2771 -0.0012024 941.4929112897024 48.866 0.44446 48.866 48.618 49.062 0 73 21 5 0 0 0 0.52888 1 26940 26940 14.838 3.198 1 70573000 63283 2941 42073 43024 73925 73925 0.013937747979525739 TAPLFINRQ 9 Unmodified _TAPLFINRQ_ 0 0 0 REV__nc|ENSG00000188158|Q6T4R5-4|NHS REV__nc|ENSG00000188158|Q6T4R5-4|NHS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2512817382812 2 530.300916 1058.58728 NaN NaN NaN NaN NaN NaN NaN 21.987 1 22.001 21.501 22.501 0.013796 0 0 0 0.85525 1 11281 11281 1.6526 1.0511 1 + 63284 23693 42074 43025 73926 73926 0.0603285157146729 TAPLGDPSVV 10 Unmodified _TAPLGDPSVV_ 0 0 0 ENST00000430297.6_2_2:220047988-220048186:+|nuORF ENST00000430297.6_2_2:220047988-220048186:+|nuORF ENST00000430297.6_2_2:220047988-220048186:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2587280273438 2 478.258382 954.502212 0.02068 9.8902E-06 1.7181 0.0008217 1.7388 0.00083159 478.25958058793043 48.95 0.27565 48.95 48.808 49.083 0 23 13 2 0 0 0 0.33553 1 26871 26871 25.399 4.9457 1 3086300 63285 13236 42075 43026 73927 73927 0.02314061314996252 TAPQHSPVL 9 Unmodified _TAPQHSPVL_ 0 0 0 REV__nc|ENSG00000183674|Q8N0U6|LINC00518 REV__nc|ENSG00000183674|Q8N0U6|LINC00518 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2583618164062 2 475.258717 948.50288 0.98864 0.00046986 0.51576 0.00024512 1.5044 0.00071498 475.2591050296226 48.582 0.46616 43.186 42.925 43.391 -5.3961 65 27 3 0 0 0 0.06294 1 30122 30122 41.84 1.3911 1 63219000 + 63286 29842 42076 43027 73928 73928 0.026569007547209367 TAPQLHKRR 9 Unmodified _TAPQLHKRR_ 0 0 0 REV__ENST00000599111.5_1_19:48613829-48613991:-|nuORF REV__ENST00000599111.5_1_19:48613829-48613991:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.30908203125 2 553.830706 1105.64686 1.9079 0.0010566 -1.2427 -0.00068824 0.66516 0.00036839 553.8299409430558 93.206 0.37225 93.229 92.981 93.354 0.022987 23 13 2 0 0 0 0.19613 1 51769 51769 4.3292 0 1 1653000 + 63287 29238 42077 43028 73929 73929 0.09826167305504896 TAPSPMSNSI 10 Oxidation (M) _TAPSPM(Oxidation (M))SNSI_ TAPSPM(1)SNSI TAPSPM(42)SNSI 0 0 1 REV__nc|ENSG00000116044|Q16236-3|NFE2L2 REV__nc|ENSG00000116044|Q16236-3|NFE2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7373352050781 2 510.736957 1019.45936 0.57106 0.00029166 1.0305 0.00052633 1.6016 0.00081799 510.7373683847857 59.704 0.34766 59.704 59.555 59.902 0 48 15 4 0 0 0 0.13297 1 33328 33328 41.956 22.699 1 28075000 + 63288 19023 42078 43029 73930 73930 1835 -0.04959076804732376 TAPTPPKRS 9 Unmodified _TAPTPPKRS_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7153015136719 2 477.771991 953.529429 -0.16673 -7.9659E-05 0.78287 0.00037403 0.61614 0.00029437 477.7722476702238 23.954 0.12231 23.954 23.873 23.995 0 8 5 2 0 0 0 0.20727 1 12191 12191 7.9102 1.187 1 260020 63289 1679 42079 43030 73931 73931 0.05080589646047429 TAPVSGDENRY 11 Unmodified _TAPVSGDENRY_ 0 0 0 REV__ENST00000486772.1_1_20:13797459-13797853:+|nuORF REV__ENST00000486772.1_1_20:13797459-13797853:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7809448242188 2 604.780741 1207.54693 -0.61501 -0.00037194 -0.37323 -0.00022572 -0.98824 -0.00059767 604.7806735992829 24.805 0.2744 24.805 24.65 24.924 0 20 14 2 0 0 0 0.68427 1 12678 12678 5.7319 0 1 719240 + 63290 18150 42080 43031 73932 73932 -0.048541596095901696 TAPVSGDENRY 11 Unmodified _TAPVSGDENRY_ 0 0 0 REV__ENST00000486772.1_1_20:13797459-13797853:+|nuORF REV__ENST00000486772.1_1_20:13797459-13797853:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 604.780741 1207.54693 -0.61501 -0.00037194 -0.37323 -0.00022572 -0.98824 -0.00059767 604.7806735992829 24.805 0.2744 24.805 24.65 24.924 0 0 0 NaN 5.7319 20 14 2 NaN NaN NaN NaN 0 NaN NaN 0 719240 + 63291 18150 42080 43031 -0.048541596095901696 TAQALELSL 9 Unmodified _TAQALELSL_ 0 0 0 CON__Q0V8M9 CON__Q0V8M9 CON__Q0V8M9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.5296020507812 1 945.525138 944.517862 -0.50596 -0.00047839 0.46915 0.00044359 -0.036807 -3.4802E-05 945.5257953081897 71.752 0.29204 71.752 71.548 71.84 0 22 12 2 0 0 0 0.45045 1 39919 39919 10.074 0 1 1291700 + 63292 182 42081 43032 73933 73933 0.04338347832049294 TAQATVLMY 9 Oxidation (M) _TAQATVLM(Oxidation (M))Y_ TAQATVLM(1)Y TAQATVLM(42)Y 0 0 1 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7539672851562 2 507.252243 1012.48993 0.65143 0.00033044 1.915 0.00097139 2.5664 0.0013018 507.75465248024403 46.595 0.30388 46.595 46.436 46.74 0 24 13 2 0 0 0 0.06294 1 25489 25489 41.84 20.968 1 3260100 63293 8037 42082 43033 73934 73934 1368 -0.015812984196941215 TAQDVLETY 9 Unmodified _TAQDVLETY_ 0 0 0 ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK ENSG00000185900|ENST00000331373|POMK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.25048828125 2 520.250754 1038.48696 0.40742 0.00021196 -1.1244 -0.00058499 -0.71703 -0.00037303 520.250446890924 47.152 0.30716 47.152 46.962 47.269 0 22 14 2 0 0 0 0.07087 1 25806 25806 39.95 24.103 1 2277600 63294 9426 42083 43034 73935 73935 -0.030748502728329186 TAQIITFSKY 10 Unmodified _TAQIITFSKY_ 0 0 0 ENST00000548585.2_1_9:94518314-94538029:-|nuORF ENST00000548585.2_1_9:94518314-94538029:-|nuORF ENST00000548585.2_1_9:94518314-94538029:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 586.7564697265625 2 586.321514 1170.62847 NaN NaN NaN NaN NaN NaN NaN 23.449 1 20.67 20.17 21.17 -2.7784 0 0 0 0.96981 1 12693 12693 3.9444 0 1 63295 15136 42084 43035 73936 73936 0.049985678202801864 TAQIQSFGRSM 11 Unmodified _TAQIQSFGRSM_ 0 0 0 nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 nc|ENSG00000173230|Q14789-4|GOLGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2055358886719 3 409.204645 1224.59211 0.80181 0.0003281 1.505 0.00061587 2.3069 0.00094397 409.2052491624163 42.222 0.36047 37.537 37.317 37.678 -4.6846 35 22 2 0 0 0 0.63851 1 25551 25551 4.7159 2.2811 1 19217000 63296 8304 42085 43036 73937 73937 -0.01120632348079198 TAQPGRPF 8 Unmodified _TAQPGRPF_ 0 0 0 ENSG00000010319|ENST00000231721|SEMA3G ENSG00000010319|ENST00000231721|SEMA3G ENSG00000010319|ENST00000231721|SEMA3G MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5828857421875 2 437.232502 872.450451 1.5595 0.00068185 0.96338 0.00042122 2.5229 0.0011031 437.23286909280233 46.724 0.24164 46.69 46.572 46.814 -0.033417 22 11 2 0 0 0 8.7369 1 25160 25160 5.7604 1.0044 1 7850300 63297 420 42086 43037 73938 73938 0.009123624117592044 TAQPPETIL 9 Unmodified _TAQPPETIL_ 0 0 0 REV__ENST00000493467.5_1_9:135785858-135804259:-|nuORF REV__ENST00000493467.5_1_9:135785858-135804259:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.6763305664062 2 485.266207 968.517862 0.52535 0.00025493 -0.66724 -0.00032379 -0.14189 -6.8855E-05 485.26578328759325 59.728 0.36985 59.728 59.532 59.902 0 44 16 4 0 0 0 0.48152 1 33175 33175 8.5933 0.68312 1 12247000 + 63298 22042 42087 43038 73939 73939 0.032343478320512986 TAQSQPVA 8 Unmodified _TAQSQPVA_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.4833984375 2 401.208692 800.402832 NaN NaN NaN NaN NaN NaN NaN 32.249 1 32.249 31.749 32.749 0 0 0 0 0.97348 1 16831 16831 5.7604 0 1 63299 4239 42088 43039 73940 73940 -0.005353365790938369 TAQSQPVAF 9 Unmodified _TAQSQPVAF_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7429809570312 2 474.742899 947.471246 0.36528 0.00017341 0.171 8.118E-05 0.53627 0.00025459 474.74297861770367 42.254 0.27599 42.254 42.125 42.401 0 31 13 3 0 0 0 0.020973 2 22822 22822;22942 62.573 20.733 1 8351000 63300 4239 42089 43040 73941;73942 73941 -0.004590919992324416 TAQWHFMDD 9 Unmodified _TAQWHFMDD_ 0 0 0 REV__ENSG00000131508|ENST00000398733|UBE2D2 REV__ENSG00000131508|ENST00000398733|UBE2D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7357177734375 2 575.734748 1149.45494 NaN NaN NaN NaN NaN NaN NaN 82.344 1 82.344 81.844 82.844 0 0 0 0 0.85798 1 45685 45685 0.52476 0 1 + 63301 19799 42090 43041 73943 73943 -0.11380541227640606 TARAVGRPAF 10 Unmodified _TARAVGRPAF_ 0 0 0 nc|nan|Q2M2W7-2|C17orf58 nc|nan|Q2M2W7-2|C17orf58 nc|nan|Q2M2W7-2|C17orf58 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.265380859375 2 523.298707 1044.58286 0.64529 0.00033768 -1.4669 -0.00076765 -0.82166 -0.00042997 523.298040540613 56.962 0.29986 56.962 56.835 57.135 0 21 12 2 0 0 0 0.23566 1 31666 31666 7.2892 2.0586 1 6338900 63302 16661 42091 43042 73944 73944 0.06235387148558402 TARDTWYVSD 10 Unmodified _TARDTWYVSD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.2771606445312 2 607.277835 1212.54112 0.19523 0.00011856 0.33945 0.00020614 0.53468 0.0003247 607.2782126703011 53.185 0.24747 53.185 53.08 53.327 0 27 10 3 0 0 0 0.50362 1 29446 29446 16.149 0 1 4247300 + 63303 17692 42092 43043 73945 73945 -0.05665258121302941 TARDTWYVSD 10 Unmodified _TARDTWYVSD_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 607.277835 1212.54112 0.43188 0.00026227 1.5637 0.0009496 1.9956 0.0012119 607.278371463045 53.815 0.08073 53.348 53.306 53.387 -0.46664 0.081492 0.001187 NaN 16.149 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1380000 + 63304 17692 42092 43043 -0.05665258121302941 TAREFEIDF 9 Unmodified _TAREFEIDF_ 0 0 0 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 ENSG00000116903|ENST00000366645|EXOC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2720947265625 2 564.272021 1126.52949 0.30141 0.00017008 0.55338 0.00031226 0.85479 0.00048234 564.2721878568358 63.16 0.4193 63.16 62.942 63.361 0 48 17 4 0 0 0 0.024507 2 35194 35194;35301 63.961 27.833 1 17071000 63305 3265 42093 43044 73946;73947 73946 -0.028714551446228143 TARKKKKK 8 Unmodified _TARKKKKK_ 0 0 0 ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3432006835938 2 494.342918 986.671283 -0.39904 -0.00019726 0.27466 0.00013577 -0.12438 -6.1486E-05 494.343651696694 103.54 0.11896 103.49 103.43 103.55 -0.047928 8 4 3 0 0 0 0.81107 1 57523 57523 0 0 1 1225600 63306 15447 42094 43045 73948 73948 0.1774142745903191 TARKKKKKK 9 Unmodified _TARKKKKKK_ 0 0 0 ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF ENST00000567998.5_1_16:28621482-28621938:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3920288085938 2 558.3904 1114.76625 NaN NaN NaN NaN NaN NaN NaN 17.455 1 17.46 16.96 17.96 0.0050564 0 0 0 0.8622 1 8804 8804 0 0 1 63307 15447 42095 43046 73949 73949 0.21345360930217794 TARKKSTG 8 Unmodified _TARKKSTG_ 0 0 0 REV__nc|ENSG00000100731|Q96RV3-4|PCNX1;REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF REV__nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2516174316406 2 424.751059 847.487565 0.092268 3.9191E-05 -1.553 -0.00065963 -1.4607 -0.00062044 424.75047467496717 33.617 0.35438 33.646 33.483 33.837 0.028931 41 15 4 0 0 0 0.80722 1 17640 17640 2.3027 0 1 23677000 + 63308 18104;28760 42096 43047 73950 73950 0.057720339575212165 TARLKRIV 8 Unmodified _TARLKRIV_ 0 0 0 REV__ENSG00000183340|ENST00000332349|JRKL REV__ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 956.6378173828125 1 956.63636 955.629084 1.4171 0.0013556 -0.93383 -0.00089333 0.48323 0.00046227 956.6352494520316 103.35 0.13834 97.179 97.112 97.25 -6.1757 61 33 2 0 0 0 0.80992 1 69270 69270 0.69038 0 1 7985900 + 63309 23341 42097 43048 73951 73951 0.14949452050643686 TARPIQLLF 9 Unmodified _TARPIQLLF_ 0 0 0 REV__nc|ENSG00000104755|Q99965-2|ADAM2 REV__nc|ENSG00000104755|Q99965-2|ADAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5506591796875 3 353.550082 1057.62842 0.20058 7.0914E-05 0.27857 9.849E-05 0.47915 0.0001694 353.5501917694174 54.138 0.17779 53.672 53.606 53.784 -0.46664 15 8 2 0 0 0 0.60485 1 29361 29361 1.0715 0 1 1071400 + 63310 18368 42098 43049 73952 73952 0.10190612610949756 TARRGLSHR 9 Unmodified _TARRGLSHR_ 0 0 0 ENST00000264956.10_2_4:5813382-5814396:+|nuORF;ENST00000264956.10_2_4:5813500-5814718:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF ENST00000264956.10_2_4:5813382-5814396:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3049926757812 2 527.304855 1052.59516 0.43588 0.00022984 0.03077 1.6225E-05 0.46665 0.00024607 527.3047979772734 90.104 0.33639 90.146 89.995 90.331 0.042175 24 11 3 0 0 0 0.56345 1 50098 50098 3.5965 3.5965 1 16167000 63311 11322 42099 43050 73953 73953 0.07096423611619684 TARRLLNL 8 Unmodified _TARRLLNL_ 0 0 0 REV__ENST00000526748.1_1_14:75536435-75544319:+|nuORF REV__ENST00000526748.1_1_14:75536435-75544319:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.8033142089844 2 478.803626 955.592698 NaN NaN NaN NaN NaN NaN NaN 24.24 1 24.238 23.738 24.738 -0.0016766 0 0 0 0.95973 1 12383 12383 8.5933 2.8329 1 + 63312 28377 42100 43051 73954 73954 0.11312575153931448 TARWFWDRR 9 Unmodified _TARWFWDRR_ 0 0 0 REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.334716796875 2 647.333613 1292.65267 -0.027606 -1.787E-05 1.2097 0.00078307 1.1821 0.0007652 647.3347048276526 98.233 0.23416 98.233 98.089 98.324 0 18 7 3 0 0 0 0.43463 1 54250 54250 10.824 2.6684 1 1724500 + 63313 25949 42101 43052 73955 73955 0.01805265817165491 TASADGQIYIY 11 Unmodified _TASADGQIYIY_ 0 0 0 ENSG00000071127|ENST00000499869|WDR1;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;ENST00000506246.5_1_4:10086058-10094494:-|nuORF;ENST00000504739.5_1_4:10086058-10094651:-|nuORF;ENST00000515743.5_1_4:10086146-10093179:-|nuORF ENSG00000071127|ENST00000499869|WDR1 ENSG00000071127|ENST00000499869|WDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.2901611328125 2 601.290411 1200.56627 0.67426 0.00040543 -0.046391 -2.7894E-05 0.62787 0.00037753 601.2902293931365 54.503 0.3597 54.503 54.33 54.689 0 28 15 2 0 0 0 0.15156 1 30285 30285 36.506 16.053 1 2311900 63314 1052 42102 43053 73956 73956 -0.02599203318709442 TASAMESG 8 Unmodified _TASAMESG_ 0 0 0 REV__ENSG00000102098|ENST00000251900|SCML2 REV__ENSG00000102098|ENST00000251900|SCML2 MSMS AL20221201_MKP_PDAC_01 4 376.8865051269531 2 377.157811 752.301069 NaN NaN NaN NaN NaN NaN NaN 44.268 1 39.416 38.916 39.916 -4.852 0 0 0 0.95607 1 27002 27002 9.3474 0 1 + 63315 18220 42103 43054 73957 73957 -0.0849895099315745 TASAVVQHM 9 Oxidation (M) _TASAVVQHM(Oxidation (M))_ TASAVVQHM(1) TASAVVQHM(72) 0 0 1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2343444824219 2 480.234384 958.454216 -0.41168 -0.0001977 -0.15588 -7.4858E-05 -0.56755 -0.00027256 480.2344846434573 15.609 0.60893 15.609 15.199 15.808 0 374 154 3 0 0 0 0.013041 3 7471 7367;7471;7571 71.922 45.039 1 3078100 63316 3132 42104 43055 73958;73959;73960 73959 554 -0.026673358766856836 TASAVVQHM 9 Oxidation (M) _TASAVVQHM(Oxidation (M))_ TASAVVQHM(1) TASAVVQHM(72) 0 0 1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.234375 2 480.234384 958.454216 0.30314 0.00014558 0.010699 5.1382E-06 0.31384 0.00015071 480.23459703398964 16.617 0.47864 14.06 13.874 14.353 -2.557 198 75 3 0 0 0 0.013041 2 8691 8588;8691 71.922 46.523 1 16544000 63317 3132 42104 43055 73961;73962 73962 554 -0.026673358766856836 TASAVVQHM 9 Unmodified _TASAVVQHM_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2368774414062 2 472.236927 942.459301 -0.23891 -0.00011282 -0.27599 -0.00013033 -0.51489 -0.00024315 472.23678148126277 25.815 0.29015 25.815 25.695 25.986 0 23 13 2 0 0 0 0.015445 1 13258 13258 68.081 38.999 1 5177000 63318 3132 42104 43056 73963 73963 -0.01423032014065484 TASAVVQHM 9 Unmodified _TASAVVQHM_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2361755371094 2 472.236927 942.459301 0.62559 0.00029543 -0.46864 -0.00022131 0.15695 7.4116E-05 472.236657797025 29.189 0.32525 25.887 25.752 26.078 -3.3016 32 19 2 0 0 0 0.0026776 2 16333 16333;16473 128.37 76.097 1 103520000 63319 3132 42104 43056 73964;73965 73964 -0.01423032014065484 TASCLICKY 9 2 Carbamidomethyl (C) _TASC(Carbamidomethyl (C))LIC(Carbamidomethyl (C))KY_ TASC(1)LIC(1)KY TASC(48)LIC(48)KY 0 2 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2651977539062 2 558.264827 1114.5151 1.3328 0.00074407 0.50948 0.00028443 1.8423 0.0010285 558.2652644134029 41.003 0.32138 36.396 36.244 36.566 -4.6079 33 19 2 0 0 0 0.044011 1 24575 24575 47.749 24.6 1 14764000 63320 16078 42105 43057 73966 73966 1006;1007 -0.0375756688877118 TASDFITKM 9 Unmodified _TASDFITKM_ 0 0 0 ENST00000373807.5_1_9:124074589-124093809:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;nc|ENSG00000148180|P06396|GSN ENST00000373807.5_1_9:124074589-124093809:+|nuORF ENST00000373807.5_1_9:124074589-124093809:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2517700195312 2 507.252243 1012.48993 0.56775 0.00028799 -0.69211 -0.00035108 -0.12436 -6.3081E-05 507.2518715538112 53.349 0.32657 47.544 47.35 47.676 -5.8042 36 20 2 0 0 0 0.069655 1 33652 33652 40.239 6.1368 1 34052000 63321 5900 42106 43058 73967 73967 -0.01581298419682753 TASEAASYEF 10 Unmodified _TASEAASYEF_ 0 0 0 ENSG00000108591|ENST00000225729|DRG2;ENST00000584212.1_1_17:17997264-18001751:+|nuORF;ENST00000578767.5_1_17:17997264-18002438:+|nuORF;ENST00000496428.6_1_17:17997264-18002989:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF;ENST00000582314.5_1_17:17997264-18003464:+|nuORF ENSG00000108591|ENST00000225729|DRG2 ENSG00000108591|ENST00000225729|DRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.232666015625 2 538.232561 1074.45057 0.074489 4.0092E-05 -0.29997 -0.00016145 -0.22548 -0.00012136 538.2322551157465 44.181 0.21368 44.181 44.051 44.265 0 17 10 2 0 0 0 0.16524 1 24020 24020 37.974 17.52 1 8354500 63322 2587 42107 43059 73968 73968 -0.08367727169570571 TASELKILY 9 Unmodified _TASELKILY_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2972412109375 2 519.297507 1036.58046 0.44702 0.00023214 1.568 0.00081426 2.015 0.0010464 519.298026467654 54.938 0.33648 54.938 54.79 55.126 0 33 14 3 0 0 0 0.0094097 1 30527 30527 82.529 44.555 1 6087000 63323 5967 42108 43060 73969 73969 0.06363493900244066 TASELKILY 9 Unmodified _TASELKILY_ 0 0 0 ENSG00000148835|ENST00000369839|TAF5;nc|ENSG00000148835|Q15542-2|TAF5 ENSG00000148835|ENST00000369839|TAF5 ENSG00000148835|ENST00000369839|TAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2977294921875 2 519.297507 1036.58046 0.3627 0.00018835 4.06 0.0021083 4.4227 0.0022967 519.2994252623869 55.426 0.43968 54.948 54.774 55.213 -0.47798 49 20 3 0 0 0 0.010611 1 30049 30049 78.728 48.092 1 5396600 63324 5967 42108 43060 73970 73970 0.06363493900244066 TASEMILVL 9 Oxidation (M) _TASEM(Oxidation (M))ILVL_ TASEM(1)ILVL TASEM(78)ILVL 0 0 1 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7705078125 2 496.770268 991.525984 0.20637 0.00010252 -0.4308 -0.00021401 -0.22443 -0.00011149 496.7704553169827 72.249 0.63229 72.249 71.776 72.408 0 76 28 4 0 0 0 0.010877 1 40236 40236 77.984 35.016 1 21649000 63325 7205 42109 43061 73971 73971 1249 0.029881587571708224 TASEMILVL 9 Oxidation (M) _TASEM(Oxidation (M))ILVL_ TASEM(1)ILVL TASEM(60)ILVL 0 0 1 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7704772949219 2 496.770268 991.525984 0.37074 0.00018417 -0.20452 -0.0001016 0.16622 8.2571E-05 496.7703036791353 72.609 0.4111 72.609 72.408 72.819 0 61 18 4 0 0 0 0.023164 1 40438 40438 60.39 30.165 1 21618000 63326 7205 42109 43061 73972 73972 1249 0.029881587571708224 TASEMILVL 9 Oxidation (M) _TASEM(Oxidation (M))ILVL_ TASEM(1)ILVL TASEM(54)ILVL 0 0 1 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7696838378906 2 496.770268 991.525984 1.341 0.00066615 -0.38739 -0.00019244 0.95358 0.00047371 496.77069668548154 79.515 0.82289 73.339 72.564 73.387 -6.1757 87 46 2 0 0 0 0.03327 2 51751 51623;51751 53.576 10.608 1 51284000 63327 7205 42109 43061 73973;73974 73974 1249 0.029881587571708224 TASEMILVL 9 Unmodified _TASEMILVL_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.537353515625 1 976.538345 975.531069 0.67015 0.00065443 -0.018337 -1.7907E-05 0.65181 0.00063652 976.5384651008774 99.276 0.29252 93.1 92.908 93.201 -6.1757 37 17 3 0 0 0 0.0090851 2 65939 65939;66112 85.357 24.967 1 100850000 63328 7205 42109 43062 73975;73976 73975 0.04232462619779653 TASEMILVL 9 Unmodified _TASEMILVL_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.773193359375 2 488.772811 975.531069 0.87102 0.00042573 -0.25644 -0.00012534 0.61457 0.00030039 488.7726988042783 99.234 0.32331 93.058 92.878 93.201 -6.1757 44 19 3 0 0 0 0.010877 2 65950 65950;66124 77.984 45.867 1 97057000 63329 7205 42109 43062 73977;73978 73977 0.04232462619779653 TASETGFLTY 10 Unmodified _TASETGFLTY_ 0 0 0 ENSG00000227057|ENST00000374617|WDR46;ENST00000489905.1_1_6:33248421-33255161:-|nuORF ENSG00000227057|ENST00000374617|WDR46 ENSG00000227057|ENST00000374617|WDR46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.261962890625 2 545.258579 1088.50261 0.31502 0.00017177 0.11509 6.2755E-05 0.43011 0.00023452 545.2588660565792 59.124 0.31995 59.124 58.965 59.285 0 28 13 3 0 0 0 0.043729 1 32908 32908 61.357 39.611 1 3495000 63330 10595 42110 43063 73979 73979 -0.03810563755791918 TASEVLDSL 9 Unmodified _TASEVLDSL_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7400512695312 2 467.740022 933.465492 0.54442 0.00025465 0.40413 0.00018903 0.94855 0.00044368 467.7396729397651 58.429 0.32141 58.429 58.262 58.583 0 23 12 3 0 0 0 0.06187 1 32513 32513 42.095 11.87 1 2596300 63331 8176 42111 43064 73980 73980 -0.003902353015632798 TASEVLDSL 9 Unmodified _TASEVLDSL_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4741821289062 1 934.472768 933.465492 0.37699 0.00035229 2.342 0.0021886 2.719 0.0025409 934.4741412100755 58.427 0.21883 58.427 58.316 58.535 0 14 8 2 0 0 0 0.06187 1 32519 32519 42.095 15.211 1 1238100 63332 8176 42111 43064 73981 73981 -0.003902353015632798 TASFIGASI 9 Unmodified _TASFIGASI_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7338256835938 2 433.734543 865.454533 -0.62536 -0.00027124 -1.3427 -0.00058236 -1.968 -0.0008536 433.7337712224414 55.475 0.26728 55.475 55.305 55.573 0 20 11 2 0 0 0 0.08691 1 30787 30787 36.127 10.728 1 2180200 + 63333 17358 42112 43065 73982 73982 0.016424071148321673 TASIAGAPTQY 11 Unmodified _TASIAGAPTQY_ 0 0 0 ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB;ENST00000557230.1_1_15:25222927-25225203:+|nuORF ENSG00000125835|ENST00000381342|SNRPB ENSG00000125835|ENST00000381342|SNRPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2720947265625 2 540.272021 1078.52949 0.31285 0.00016902 0.64424 0.00034806 0.95709 0.00051709 540.2725151983683 39.421 0.37209 39.421 39.244 39.616 0 32 17 3 0 0 0 0.12183 1 21117 21117 39.95 20.693 1 3494700 63334 3892 42113 43066 73983 73983 -0.0066345514460408594 TASIQTLL 8 Unmodified _TASIQTLL_ 0 0 0 REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7500915527344 2 423.750193 845.485833 -0.034806 -1.4749E-05 -0.13799 -5.8473E-05 -0.1728 -7.3222E-05 423.75010280037765 61.91 0.22225 61.91 61.821 62.044 0 13 9 2 0 0 0 0.77907 1 34528 34528 10.183 0 1 1419400 + 63335 25905 42114 43067 73984 73984 0.056909801489041456 TASIQTLL 8 Unmodified _TASIQTLL_ 0 0 0 REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF REV__ENST00000360083.3_1_2:214142443-214148802:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.75048828125 2 423.750193 845.485833 NaN NaN NaN NaN NaN NaN NaN 48.705 1 48.705 48.205 49.205 0 0 0 0 0.95201 1 26746 26746 10.183 0 1 + 63336 25905 42114 43067 73985 73985 0.056909801489041456 TASKALCGF 9 Carbamidomethyl (C) _TASKALC(Carbamidomethyl (C))GF_ TASKALC(1)GF TASKALC(60)GF 0 1 0 ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.739990234375 2 477.739302 953.464052 0.95065 0.00045416 -0.30675 -0.00014655 0.6439 0.00030762 477.73899429684514 39.23 0.24362 34.78 34.632 34.876 -4.4509 22 15 2 0 0 0 0.023481 1 23272 23272 60.074 34.675 1 6168300 63337 4898 42115 43068 73986 73986 506 -0.014541478713113065 TASLFVVSL 9 Unmodified _TASLFVVSL_ 0 0 0 ENSG00000272398|ENST00000606017|CD24;nc|ENSG00000272398|P25063-2|CD24 ENSG00000272398|ENST00000606017|CD24 ENSG00000272398|ENST00000606017|CD24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7743225097656 2 468.773668 935.532783 0.39009 0.00018286 0.67605 0.00031691 1.0661 0.00049978 468.77399494449486 93.693 0.26288 93.235 93.09 93.353 -0.45741 24 11 3 0 0 0 0.14602 1 51179 51179 28.487 5.3384 1 730690 63338 10888 42116 43069 73987 73987 0.06243839700039189 TASLFVVSL 9 Unmodified _TASLFVVSL_ 0 0 0 ENSG00000272398|ENST00000606017|CD24;nc|ENSG00000272398|P25063-2|CD24 ENSG00000272398|ENST00000606017|CD24 ENSG00000272398|ENST00000606017|CD24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.773681640625 2 468.773668 935.532783 1.7265 0.00080933 -0.018003 -8.4393E-06 1.7085 0.0008009 468.77348526183255 93.194 0.35028 93.217 93.003 93.354 0.022987 20 12 2 0 0 0 0.0090851 1 51819 51819 85.357 18.013 1 2206300 63339 10888 42116 43069 73988 73988 0.06243839700039189 TASLFVVSL 9 Unmodified _TASLFVVSL_ 0 0 0 ENSG00000272398|ENST00000606017|CD24;nc|ENSG00000272398|P25063-2|CD24 ENSG00000272398|ENST00000606017|CD24 ENSG00000272398|ENST00000606017|CD24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5404663085938 1 936.54006 935.532783 1.262 0.0011819 0.10541 9.8725E-05 1.3674 0.0012806 936.5401969572971 100.09 0.15851 93.918 93.838 93.996 -6.1757 22 9 3 0 0 0 0.0095811 1 66819 66819 81.613 10.479 1 29053000 63340 10888 42116 43069 73989 73989 0.06243839700039189 TASLFVVSL 9 Unmodified _TASLFVVSL_ 0 0 0 ENSG00000272398|ENST00000606017|CD24;nc|ENSG00000272398|P25063-2|CD24 ENSG00000272398|ENST00000606017|CD24 ENSG00000272398|ENST00000606017|CD24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7746887207031 2 468.773668 935.532783 1.2856 0.00060265 1.0102 0.00047357 2.2958 0.0010762 468.77367699176114 100.08 0.22599 93.907 93.804 94.03 -6.1757 22 13 2 0 0 0 0.012148 1 66857 66857 74.423 16.951 1 28596000 63341 10888 42116 43069 73990 73990 0.06243839700039189 TASLPFWART 10 Unmodified _TASLPFWART_ 0 0 0 ENST00000491306.5_1_2:217363547-217363586:+|nuORF ENST00000491306.5_1_2:217363547-217363586:+|nuORF ENST00000491306.5_1_2:217363547-217363586:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8732604980469 3 383.873224 1148.59784 NaN NaN NaN NaN NaN NaN NaN 60.106 1 60.052 59.552 60.552 -0.053062 0 0 0 0.97784 1 32776 32776 3.0723 0 1 63342 14278 42117 43070 73991 73991 0.029488342258673583 TASLPMIVSI 10 Unmodified _TASLPMIVSI_ 0 0 0 nc|ENSG00000143768|O00292-2|LEFTY2;ENSG00000143768|ENST00000366820|LEFTY2 nc|ENSG00000143768|O00292-2|LEFTY2 nc|ENSG00000143768|O00292-2|LEFTY2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2940063476562 2 516.293911 1030.57327 1.1201 0.0005783 0.057951 2.992E-05 1.178 0.00060822 516.2942756478683 79.887 0.44326 73.711 73.464 73.908 -6.1757 53 26 3 0 0 0 0.16524 1 52408 52408 37.974 1.847 1 21966000 63343 5549 42118 43071 73992 73992 0.05920438028147146 TASLPQHR 8 Unmodified _TASLPQHR_ 0 0 0 ENSG00000186868|ENST00000262410|MAPT ENSG00000186868|ENST00000262410|MAPT ENSG00000186868|ENST00000262410|MAPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2489624023438 2 455.248683 908.482814 0.30056 0.00013683 0.46295 0.00021076 0.76351 0.00034759 455.2490743941572 16.677 0.11801 14.12 14.075 14.193 -2.557 22 17 2 0 0 0 0.77186 1 8659 8659 10.824 0 1 1924700 63344 9515 42119 43072 73993 73993 0.024911498147503153 TASLSFDEE 9 Unmodified _TASLSFDEE_ 0 0 0 REV__ENSG00000167565|ENST00000322354|SERTAD3 REV__ENSG00000167565|ENST00000322354|SERTAD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7200012207031 2 499.719287 997.424021 0.19666 9.8274E-05 -0.90985 -0.00045467 -0.7132 -0.0003564 499.71875421908527 78.951 0.95311 78.465 78.059 79.012 -0.48596 72 39 2 0 0 0 0.58865 1 43537 43537 2.0598 0 1 1197500 + 63345 22220 42120 43073 73994 73994 -0.07479416060891708 TASNLVQNY 9 Unmodified _TASNLVQNY_ 0 0 0 ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3;ENST00000567143.1_1_16:58438378-58438630:+|nuORF;nc|ENSG00000181938|Q9BRX5-2|GINS3 ENSG00000181938|ENST00000318129|GINS3 ENSG00000181938|ENST00000318129|GINS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2529602050781 2 505.251089 1008.48762 0.51745 0.00026144 0.30111 0.00015214 0.81856 0.00041358 505.25131332927697 37.211 0.2788 37.211 37.037 37.316 0 33 13 3 0 0 0 0.022193 2 19721 19721;19827 61.357 38.621 1 7710300 63346 9007 42121 43074 73995;73996 73995 -0.016280108331443444 TASNLVQNY 9 Unmodified _TASNLVQNY_ 0 0 0 ENSG00000181938|ENST00000318129|GINS3;nc|ENSG00000181938|Q9BRX5-3|GINS3;ENST00000567143.1_1_16:58438378-58438630:+|nuORF;nc|ENSG00000181938|Q9BRX5-2|GINS3 ENSG00000181938|ENST00000318129|GINS3 ENSG00000181938|ENST00000318129|GINS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2518920898438 2 505.251089 1008.48762 0.67519 0.00034114 0.037652 1.9024E-05 0.71284 0.00036016 505.25124537312365 43.433 0.36886 38.668 38.505 38.874 -4.7648 43 24 2 0 0 0 0.028475 2 26346 26346;26485 56.177 35.723 1 24135000 63347 9007 42121 43074 73997;73998 73997 -0.016280108331443444 TASPIGEGLLF 11 Unmodified _TASPIGEGLLF_ 0 0 0 REV__ENSG00000115183|ENST00000263635|TANC1 REV__ENSG00000115183|ENST00000263635|TANC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8698120117188 3 368.869368 1103.58628 -0.50525 -0.00018637 1.2503 0.0004612 0.74504 0.00027482 368.8697640380342 19.47 0.27552 19.498 19.293 19.569 0.028357 49 26 3 0 0 0 0.65108 1 9803 9803 4.4062 0.21665 1 2166800 + 63348 18956 42122 43075 73999 73999 0.03862592411906007 TASPNGLYVL 10 Unmodified _TASPNGLYVL_ 0 0 0 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 ENSG00000065268|ENST00000585809|WDR18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7789306640625 2 517.779482 1033.54441 0.19931 0.0001032 0.098634 5.1071E-05 0.29794 0.00015427 517.779218364418 58.226 0.28451 57.736 57.556 57.84 -0.48991 28 13 3 0 0 0 0.27276 1 31644 31644 29.082 1.4528 1 4490300 63349 896 42123 43076 74000 74000 0.028980367233771176 TASPVAVSL 9 Unmodified _TASPVAVSL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 844.4779663085938 1 844.47746 843.470183 -0.82038 -0.00069279 1.104 0.00093228 0.2836 0.00023949 844.4783938612931 55.471 0.34794 55.471 55.283 55.631 0 44 15 4 0 0 0 0.0082485 2 30846 30740;30846 96.285 38.813 1 14037000 63350 1249 42124 43077 74001;74002 74002 0.04218693631867154 TASPVAVSL 9 Unmodified _TASPVAVSL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 844.4789428710938 1 844.47746 843.470183 0.77086 0.00065098 0.57619 0.00048658 1.3471 0.0011376 844.4777259836056 63.38 0.48654 57.204 56.964 57.45 -6.1757 67 27 3 0 0 0 0.0082485 3 40849 40849;40976;41116 108 43.761 1 42370000 63351 1249 42124 43077 74003;74004;74005 74003 0.04218693631867154 TASPVAVSL 9 Unmodified _TASPVAVSL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.7423706054688 2 422.742368 843.470183 1.1284 0.00047704 0.15059 6.3662E-05 1.279 0.0005407 422.7424687667314 63.396 0.4416 57.22 56.964 57.405 -6.1757 41 25 2 0 0 0 0.0082281 2 40919 40919;41060 92.822 14.838 1 29338000 63352 1249 42124 43077 74006;74007 74006 0.04218693631867154 TASPVAVSL 9 Unmodified _TASPVAVSL_ 0 0 0 nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-4|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 nc|ENSG00000078674|Q15154-2|PCM1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 844.47746 843.470183 -0.88617 -0.00074835 0.3799 0.00032081 -0.50627 -0.00042753 844.4779620303024 56.027 0.26241 55.541 55.372 55.634 -0.48554 0.03491 -0.00054292 NaN 96.285 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3222700 63353 1249 42124 43077 0.04218693631867154 TASQDKILF 9 Unmodified _TASQDKILF_ 0 0 0 ENSG00000168404|ENST00000308807|MLKL;nc|ENSG00000168404|Q8NB16-2|MLKL ENSG00000168404|ENST00000308807|MLKL ENSG00000168404|ENST00000308807|MLKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7792358398438 2 511.779482 1021.54441 0.12392 6.3418E-05 -0.5987 -0.0003064 -0.47478 -0.00024298 511.77912668020036 48.204 0.41847 48.204 47.995 48.413 0 54 20 4 0 0 0 0.012228 3 26495 26367;26387;26495 74.2 19.129 1 37675000 63354 7759 42125 43078 74008;74009;74010 74010 0.034500367233931684 TASQDKILF 9 Unmodified _TASQDKILF_ 0 0 0 ENSG00000168404|ENST00000308807|MLKL;nc|ENSG00000168404|Q8NB16-2|MLKL ENSG00000168404|ENST00000308807|MLKL ENSG00000168404|ENST00000308807|MLKL MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7781677246094 2 511.779482 1021.54441 0.68343 0.00034977 2.0293 0.0010385 2.7127 0.0013883 511.77972400448925 53.108 0.31984 47.303 47.03 47.35 -5.8042 38 17 3 0 0 0 0.022461 1 33421 33421 61.09 9.4601 1 82584000 63355 7759 42125 43078 74011 74011 0.034500367233931684 TASQDKILF 9 Unmodified _TASQDKILF_ 0 0 0 ENSG00000168404|ENST00000308807|MLKL;nc|ENSG00000168404|Q8NB16-2|MLKL ENSG00000168404|ENST00000308807|MLKL ENSG00000168404|ENST00000308807|MLKL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 511.779482 1021.54441 0.70347 0.00036002 -0.16638 -8.5149E-05 0.53709 0.00027487 511.77948996784016 48.238 0.21798 48.2 48.026 48.244 -0.038647 -0.0020795 0.0003658 NaN 74.2 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1148200 63356 7759 42125 43078 0.034500367233931684 TASQLSYSGTY 11 Unmodified _TASQLSYSGTY_ 0 0 0 nc|ENSG00000259092|A0A087WSZ9|TRAV30 nc|ENSG00000259092|A0A087WSZ9|TRAV30 nc|ENSG00000259092|A0A087WSZ9|TRAV30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2717895507812 2 589.272218 1176.52988 0.13208 7.7833E-05 3.528 0.002079 3.6601 0.0021568 589.2737060342008 75.523 0.27842 75.523 75.393 75.672 0 17 11 2 0 0 0 0.63851 1 42024 42024 9.3831 2.0939 1 518670 63357 16593 42126 43079 74012 74012 -0.05132080215412316 TASSGHYIAY 10 Unmodified _TASSGHYIAY_ 0 0 0 nc|ENSG00000077254|Q8TEY7-3|USP33;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2515869140625 2 535.251089 1068.48762 0.030292 1.6214E-05 -0.37585 -0.00020117 -0.34556 -0.00018496 535.2507945566621 31.041 0.24061 31.041 30.912 31.152 0 35 11 4 0 0 0 0.017277 1 16131 16131 78.149 55.413 1 7754000 63358 1211 42127 43080 74013 74013 -0.043880108331450174 TASSGHYIAY 10 Unmodified _TASSGHYIAY_ 0 0 0 nc|ENSG00000077254|Q8TEY7-3|USP33;ENSG00000077254|ENST00000370794|USP33;nc|ENSG00000077254|Q8TEY7|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 nc|ENSG00000077254|Q8TEY7-3|USP33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2501831054688 2 535.251089 1068.48762 0.83526 0.00044707 -0.59033 -0.00031598 0.24493 0.0001311 535.2509254047727 34.756 0.38254 30.661 30.486 30.869 -4.0951 52 22 3 0 0 0 0.0093317 2 20011 20011;20136 88.904 64.883 1 19169000 63359 1211 42127 43080 74014;74015 74014 -0.043880108331450174 TASSRIHIY 9 Unmodified _TASSRIHIY_ 0 0 0 ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15 ENSG00000164338|ENST00000296792|UTP15 ENSG00000164338|ENST00000296792|UTP15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2086791992188 2 524.282723 1046.55089 -0.29265 -0.00015343 0.14276 7.4849E-05 -0.14989 -7.8584E-05 524.2829031918898 27.639 0.10486 27.639 27.596 27.7 0 6 4 2 0 0 0 0.19758 1 14255 14255 13.042 5.7532 1 650320 63360 7183 42128 43081 74016 74016 0.029479746747711033 TASSRIHIY 9 Unmodified _TASSRIHIY_ 0 0 0 ENSG00000164338|ENST00000296792|UTP15;nc|ENSG00000164338|Q8TED0-3|UTP15 ENSG00000164338|ENST00000296792|UTP15 ENSG00000164338|ENST00000296792|UTP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.28271484375 2 524.282723 1046.55089 1.0352 0.00054274 -2.7385 -0.0014358 -1.7033 -0.00089301 524.2810674640211 30.371 0.31072 26.874 26.698 27.009 -3.497 24 15 2 0 0 0 0.011291 1 17117 17117 76.825 44.519 1 12265000 63361 7183 42128 43081 74017 74017 0.029479746747711033 TASSSITEM 9 Unmodified _TASSSITEM_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7109375 2 463.710408 925.406262 0.84283 0.00039083 -0.32205 -0.00014934 0.52078 0.00024149 463.7103242442305 39.122 0.35176 34.671 34.445 34.796 -4.4509 39 22 2 0 0 0 0.042911 2 23097 23097;23239 48.346 29.089 1 18133000 63362 3759 42129 43082 74018;74019 74018 -0.059424545873980605 TASSSITEM 9 Unmodified _TASSSITEM_ 0 0 0 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 926.4142456054688 1 926.413539 925.406262 0.84365 0.00078157 -0.61775 -0.00057229 0.22591 0.00020928 926.413512440797 39.123 0.26168 34.672 34.488 34.75 -4.4509 23 16 2 0 0 0 0.00856 1 23116 23116 100.37 60.414 1 4856300 63363 3759 42129 43082 74020 74020 -0.059424545873980605 TASSSTPCISL 11 Unmodified _TASSSTPCISL_ 0 0 0 ENSG00000186714|ENST00000335185|CCDC73 ENSG00000186714|ENST00000335185|CCDC73 ENSG00000186714|ENST00000335185|CCDC73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7579956054688 2 533.757889 1065.50123 0.20375 0.00010875 -0.74597 -0.00039817 -0.54222 -0.00028942 533.7574981394005 65.398 0.30861 65.398 65.194 65.503 0 19 11 2 0 0 0 0.37677 1 36465 36465 22.736 4.5899 1 1250700 63364 9500 42130 43083 74021 74021 -0.02890521116205491 TASSVALDL 9 Unmodified _TASSVALDL_ 0 0 0 ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2 ENST00000523824.5_1_8:126104167-126163564:+|nuORF ENST00000523824.5_1_8:126104167-126163564:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 876.4681396484375 1 876.467289 875.460012 0.36354 0.00031863 -0.088516 -7.7581E-05 0.27502 0.00024105 876.4675435490379 57.797 0.30914 57.797 57.681 57.99 0 33 13 3 0 0 0 0.012148 2 32230 32131;32230 74.423 31.3 1 5079800 63365 6482 42131 43084 74022;74023 74023 0.01730085906626755 TASSVALDL 9 Unmodified _TASSVALDL_ 0 0 0 ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2 ENST00000523824.5_1_8:126104167-126163564:+|nuORF ENST00000523824.5_1_8:126104167-126163564:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7373657226562 2 438.737283 875.460012 0.49004 0.000215 1.1313 0.00049633 1.6213 0.00071133 438.73733707143407 57.812 0.26333 57.812 57.681 57.944 0 17 11 2 0 0 0 0.087258 1 32182 32182 36.044 7.5574 1 1071000 63366 6482 42131 43084 74024 74024 0.01730085906626755 TASSVALDL 9 Unmodified _TASSVALDL_ 0 0 0 ENST00000523824.5_1_8:126104167-126163564:+|nuORF;ENSG00000156831|ENST00000287437|NSMCE2 ENST00000523824.5_1_8:126104167-126163564:+|nuORF ENST00000523824.5_1_8:126104167-126163564:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.4669799804688 1 876.467289 875.460012 0.21148 0.00018536 0.57586 0.00050473 0.78735 0.00069008 876.4673167526889 65.611 0.33989 59.435 59.236 59.576 -6.1757 31 19 2 0 0 0 0.0082281 2 42627 42488;42627 92.822 33.267 1 18599000 63367 6482 42131 43084 74025;74026 74026 0.01730085906626755 TASYVRAQY 9 Unmodified _TASYVRAQY_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2;ENST00000586441.1_1_19:45867568-45872241:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.27001953125 2 529.766906 1057.51926 -0.35387 -0.00018747 0.61948 0.00032818 0.2656 0.00014071 530.2691347782984 27.392 0.19545 27.392 27.273 27.469 0 14 9 2 0 0 0 0.094149 1 14103 14103 34.402 12.655 1 1531300 63368 2250 42132 43085 74027 74027 -0.00720018079186957 TATATNHVL 9 Unmodified _TATATNHVL_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2483825683594 2 464.248349 926.482145 0.1864 8.6536E-05 -0.011573 -5.3729E-06 0.17483 8.1164E-05 464.24840049464984 23.82 0.33616 23.82 23.659 23.995 0 42 16 3 0 0 0 0.015445 1 12134 12134 68.081 28.123 1 5660400 63369 279 42133 43086 74028 74028 0.015963103750550545 TATATNHVL 9 Unmodified _TATATNHVL_ 0 0 0 ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL ENSG00000004700|ENST00000444129|RECQL MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.24853515625 2 464.248349 926.482145 0.52892 0.00024555 -0.93562 -0.00043436 -0.4067 -0.00018881 464.24798714224585 26.757 0.4388 23.72 23.493 23.932 -3.0365 55 22 3 0 0 0 0.0085164 2 14774 14774;14886 99.799 51.453 1 45045000 63370 279 42133 43086 74029;74030 74029 0.015963103750550545 TATATVAAL 9 Unmodified _TATATVAAL_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENSG00000108175|ENST00000334512|ZMIZ1;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENST00000478357.1_1_10:81036939-81053539:+|nuORF nc|ENSG00000122515|Q8NF64-3|ZMIZ2;ENSG00000108175|ENST00000334512|ZMIZ1 ENSG00000108175|ENST00000334512|ZMIZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 818.4598999023438 1 818.46181 817.454533 1.2729 0.0010418 -0.78904 -0.0006458 0.48387 0.00039603 818.4610125602783 50.694 0.39642 45.045 44.804 45.2 -5.649 32 24 2 0 0 0 0.0077963 2 31731 31731;31861 109.63 20.202 1 23989000 63371 2549;3643 42134 43087 74031;74032 74031 0.03850407114805421 TATAVITV 8 Unmodified _TATAVITV_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1;TSHZ3-CDH2|1|fusion;nc|ENSG00000170558|P19022-2|CDH2;ENSG00000170558|ENST00000269141|CDH2 nc|ENSG00000039068|P12830-2|CDH1;TSHZ3-CDH2|1|fusion nc|ENSG00000039068|P12830-2|CDH1 MSMS AL20221201_MKP_PDAC_01 4 388.2321166992188 2 388.231636 774.448719 NaN NaN NaN NaN NaN NaN NaN 49.796 1 44.256 43.756 44.756 -5.5391 0 0 0 0.29791 1 31149 31149 63.563 9.9873 1 63372 639;8003 42135 43088 74033 74033 0.05247308603145484 TATDLTSTF 9 Unmodified _TATDLTSTF_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7328796386719 2 478.732197 955.449842 0.55472 0.00026556 1.461 0.00069944 2.0158 0.000965 478.73300980639 49.938 0.19325 49.938 49.793 49.986 0 12 8 2 0 0 0 0.39863 1 27518 27518 12.532 0.89125 1 1058700 63373 7924 42136 43089 74034 74034 -0.029665218186096354 TATEETRVF 9 Unmodified _TATEETRVF_ 0 0 0 REV__nc|ENSG00000131016|Q02952-3|AKAP12 REV__nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2622680664062 2 527.264196 1052.51384 0.55838 0.00029441 0.026167 1.3797E-05 0.58455 0.00030821 527.766303444399 66.262 0.59442 66.262 66.153 66.747 0 40 26 3 0 0 0 0.54444 1 36986 36986 4.756 0 1 2230200 + 63374 19762 42137 43090 74035 74035 -0.01031741661677188 TATEITESF 9 Unmodified _TATEITESF_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.4681396484375 1 998.467683 997.460406 -0.18594 -0.00018566 0.15981 0.00015957 -0.026128 -2.6088E-05 998.4676813673685 49.012 0.30405 49.012 48.89 49.194 0 32 14 3 0 0 0 0.012148 2 27002 26893;27002 74.423 33.241 1 11430000 63375 4107 42138 43091 74036;74037 74037 -0.038425391641794704 TATEITESF 9 Unmodified _TATEITESF_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.738037109375 2 499.73748 997.460406 0.21995 0.00010992 -0.12131 -6.0621E-05 0.098647 4.9298E-05 499.73733620786174 49.007 0.43348 49.007 48.761 49.194 0 51 20 4 0 0 0 0.038285 2 27026 26908;27026 50.855 22.682 1 28828000 63376 4107 42138 43091 74038;74039 74039 -0.038425391641794704 TATEITESF 9 Unmodified _TATEITESF_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2402954101562 2 499.73748 997.460406 0.66684 0.00033325 -0.64451 -0.00032209 0.022329 1.1158E-05 499.73714892564976 56.7 0.41214 50.723 50.529 50.941 -5.9769 49 23 3 0 0 0 0.012148 1 36128 36128 74.423 32.328 1 58680000 63377 4107 42138 43091 74040 74040 -0.038425391641794704 TATELIMFY 9 Oxidation (M) _TATELIM(Oxidation (M))FY_ TATELIM(1)FY TATELIM(71)FY 0 0 1 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7681274414062 2 552.767726 1103.5209 0.43886 0.00024259 -0.15753 -8.7076E-05 0.28133 0.00015551 552.7676760101929 77.049 0.47646 77.049 76.905 77.382 0 71 29 4 0 0 0 0.013472 2 42977 42883;42977 70.716 47.567 1 3330600 63378 10185 42139 43092 74041;74042 74042 1657 -0.026721451054299905 TATELIMFY 9 Oxidation (M) _TATELIM(Oxidation (M))FY_ TATELIM(1)FY TATELIM(71)FY 0 0 1 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7660522460938 2 552.767726 1103.5209 NaN NaN NaN NaN NaN NaN NaN 76.957 1 76.957 76.457 77.457 0 0 0 0 0.026323 1 42781 42781 70.716 47.567 1 63379 10185 42139 43092 74043 74043 1657 -0.026721451054299905 TATELIMFY 9 Oxidation (M) _TATELIM(Oxidation (M))FY_ TATELIM(1)FY TATELIM(71)FY 0 0 1 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7670288085938 2 552.767726 1103.5209 -0.58759 -0.0003248 1.2247 0.000677 0.63716 0.0003522 552.768424772907 77.559 0.71812 77.076 76.721 77.439 -0.4826 92 35 4 0 0 0 0.013472 3 42391 42391;42493;42603 70.716 47.567 1 7353700 63380 10185 42139 43092 74044;74045;74046 74044 1657 -0.026721451054299905 TATELIMFY 9 Oxidation (M) _TATELIM(Oxidation (M))FY_ 0 0 1 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 552.767726 1103.5209 0.19784 0.00010936 2.5358 0.0014017 2.7336 0.001511 553.2692518048683 76.884 0.1212 76.934 76.889 77.01 0.05011 -0.085279 0.0022798 NaN 70.716 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 551350 63381 10185 42139 43092 1657 -0.026721451054299905 TATELIMFY 9 Unmodified _TATELIMFY_ 0 0 0 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 ENSG00000198886|ENST00000361381|MT-ND4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7701416015625 2 544.770268 1087.52598 0.23548 0.00012828 -0.16521 -9.0002E-05 0.070267 3.8279E-05 544.7702713197689 88.774 0.30316 88.27 88.091 88.394 -0.50423 31 12 4 0 0 0 0.48152 1 48501 48501 8.5933 6.2905 1 759590 63382 10185 42139 43093 74047 74047 -0.014278412428211595 TATEVDIKM 9 Oxidation (M) _TATEVDIKM(Oxidation (M))_ TATEVDIKM(1) TATEVDIKM(48) 0 0 1 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2548217773438 2 512.254982 1022.49541 -0.18305 -9.3769E-05 -0.56293 -0.00028836 -0.74598 -0.00038213 512.2547673044255 24.296 0.39244 24.296 24.138 24.531 0 62 23 3 0 0 0 0.044296 2 12468 12366;12468 47.594 13.136 1 5677200 63383 8680 42140 43094 74048;74049 74049 1468 -0.014936196278767966 TATEVDIKM 9 Oxidation (M) _TATEVDIKM(Oxidation (M))_ TATEVDIKM(1) TATEVDIKM(80) 0 0 1 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.255859375 2 512.254982 1022.49541 0.31275 0.00016021 0.011587 5.9353E-06 0.32434 0.00016615 512.2549077163955 28.031 0.50891 24.883 24.568 25.077 -3.1482 76 27 4 0 0 0 0.010301 2 15498 15498;15622 79.596 27.328 1 25252000 63384 8680 42140 43094 74050;74051 74050 1468 -0.014936196278767966 TATEVDIKM 9 Unmodified _TATEVDIKM_ 0 0 0 ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.N1516Mfs*10|1|0.1|ENSG00000177409|chr7:93131425-93131425|T/-|frameshift_variant ENSG00000177409|ENST00000318238|SAMD9L ENSG00000177409|ENST00000318238|SAMD9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2579040527344 2 504.257525 1006.5005 0.50632 0.00025532 0.019068 9.615E-06 0.52539 0.00026493 504.2575919960744 46.368 0.34642 41.288 41.036 41.383 -5.0805 60 23 3 0 0 0 0.013609 2 28623 28487;28623 70.332 39.695 1 85219000 63385 8680 42140 43095 74052;74053 74053 -0.002493157652679656 TATGVQETF 9 Unmodified _TATGVQETF_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF;ENST00000498831.1_1_3:183854405-183855259:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MSMS AL20221201_MKP_PDAC_01 4 477.2322998046875 2 477.232364 952.450176 NaN NaN NaN NaN NaN NaN NaN 44.019 1 39.254 38.754 39.754 -4.7648 0 0 0 0.39043 1 26814 26814 20.454 5.8719 1 63386 5671 42141 43096 74054 74054 -0.02795102098764346 TATLCILNI 9 Unmodified _TATLCILNI_ 0 0 0 ENSG00000126773|ENST00000406854|PCNX4;ENST00000483571.5_1_14:60582139-60592559:+|nuORF ENSG00000126773|ENST00000406854|PCNX4 ENSG00000126773|ENST00000406854|PCNX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 961.5333251953125 1 961.53868 960.531403 0.27193 0.00026147 -3.0181 -0.002902 -2.7461 -0.0026405 961.535697161874 97.16 0.27252 96.917 96.772 97.045 -0.24277 18 11 2 0 0 0 0.06187 1 53071 53071 42.095 13.608 1 761790 63387 3966 42142 43097 74055 74055 0.04955882339629625 TATLHVQAS 9 Unmodified _TATLHVQAS_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2484436035156 2 464.248349 926.482145 0.1864 8.6536E-05 -0.011573 -5.3729E-06 0.17483 8.1164E-05 464.24840049464984 23.82 0.33616 23.82 23.659 23.995 0 42 16 3 0 0 0 0.51218 1 12233 12233 6.7232 0 1 5660400 63388 5448 42143 43098 74056 74056 0.015963103750436858 TATQTRQTS 9 Unmodified _TATQTRQTS_ 0 0 0 ENST00000567224.1_1_15:53809927-53815498:-|nuORF ENST00000567224.1_1_15:53809927-53815498:-|nuORF ENST00000567224.1_1_15:53809927-53815498:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7822875976562 2 497.25162 992.488687 0.9144 0.00045469 -1.8896 -0.00093963 -0.97524 -0.00048494 497.2514569596573 40.673 0.515 36.143 35.858 36.373 -4.5294 61 31 4 0 0 0 0.18882 1 24399 24399 15.847 7.937 1 23809000 63389 15434 42144 43099 74057 74057 -0.007857964642198567 TATSVQDVF 9 Unmodified _TATSVQDVF_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72960370-72968856:-|nuORF nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2400817871094 2 484.24019 966.465826 0.2525 0.00012227 0.46143 0.00022344 0.71392 0.00034571 484.2403742267473 51.719 0.3257 51.719 51.561 51.886 0 44 14 4 0 0 0 0.026094 2 28531 28531;28643 57.471 19.497 1 28969000 63390 7676 42145 43100 74058;74059 74058 -0.018748155817092993 TATSVQDVF 9 Unmodified _TATSVQDVF_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72960370-72968856:-|nuORF nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 967.4735717773438 1 967.473103 966.465826 0.15144 0.00014651 -0.13906 -0.00013454 0.012378 1.1975E-05 967.4729512390956 51.719 0.24075 51.719 51.583 51.823 0 23 10 3 0 0 0 0.0083938 1 28599 28599 108 46.64 1 4208800 63391 7676 42145 43100 74060 74060 -0.018748155817092993 TATTHASVI 9 Unmodified _TATTHASVI_ 0 0 0 ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT ENSG00000070444|ENST00000174618|MNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7424926757812 2 450.742899 899.471246 -0.21334 -9.6163E-05 -2.4445 -0.0011019 -2.6579 -0.001198 450.74193135877107 34.967 0.28311 34.967 34.846 35.129 0 18 14 2 0 0 0 0.052168 1 18466 18466 44.407 14.182 1 2106300 63392 1029 42146 43101 74061 74061 0.017489080007635494 TATTSPITY 9 Unmodified _TATTSPITY_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4803466796875 1 954.477854 953.470577 -0.21687 -0.00020699 0.73076 0.0006975 0.5139 0.0004905 954.4785184347948 39.889 0.21776 39.889 39.775 39.993 0 17 10 2 0 0 0 0.070838 1 21392 21392 39.957 16.809 1 1515200 63393 1235 42147 43102 74062 74062 -0.008019314389457577 TATTSPITY 9 Unmodified _TATTSPITY_ 0 0 0 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 ENSG00000078081|ENST00000265598|LAMP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7427368164062 2 477.742565 953.470577 0.22772 0.00010879 -0.29773 -0.00014224 -0.070011 -3.3447E-05 477.74239648570256 39.863 0.25295 39.863 39.74 39.993 0 21 12 2 0 0 0 0.087258 1 21397 21397 36.044 12.896 1 2321800 63394 1235 42147 43102 74063 74063 -0.008019314389457577 TATVIANSF 9 Unmodified _TATVIANSF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2457885742188 2 462.245275 922.475997 0.61385 0.00028375 -0.23438 -0.00010834 0.37946 0.00017541 462.245088179993 51.714 0.21925 51.714 51.583 51.802 0 14 9 2 0 0 0 0.087258 1 28596 28596 36.044 14.298 1 2241600 63395 8355 42148 43103 74064 74064 0.011657921435244134 TATVIANSF 9 Unmodified _TATVIANSF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 923.481689453125 1 923.483273 922.475997 0.23705 0.00021891 0.98112 0.00090605 1.2182 0.001125 923.4831936648123 51.719 0.26263 51.719 51.561 51.823 0 23 11 3 0 0 0 0.095405 1 28640 28640 34.102 17.16 1 3595400 63396 8355 42148 43103 74065 74065 0.011657921435244134 TATVIANSF 9 Unmodified _TATVIANSF_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 923.4840087890625 1 923.483273 922.475997 0.4284 0.00039562 1.2981 0.0011988 1.7265 0.0015944 923.4842714543303 52.26 0.22095 51.826 51.688 51.909 -0.43367 17 10 2 0 0 0 0.022193 1 28205 28205 61.357 32.871 1 921810 63397 8355 42148 43103 74066 74066 0.011657921435244134 TATVYFKRF 9 Unmodified _TATVYFKRF_ 0 0 0 ENSG00000112237|ENST00000520429|CCNC;ENST00000523639.5_1_6:99998829-100016472:-|nuORF ENSG00000112237|ENST00000520429|CCNC ENSG00000112237|ENST00000520429|CCNC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.8797302246094 3 378.209836 1131.60768 1.6083 0.00060829 2.49 0.00094174 4.0983 0.00155 378.21091093938765 42.715 0.22011 38.031 37.869 38.089 -4.6846 17 13 2 0 0 0 0.20883 1 25825 25825 2.4985 0 1 10231000 63398 2871 42149 43104 74067 74067 0.04714022231269155 TAVAGLTSY 9 Unmodified _TAVAGLTSY_ 0 0 0 ENSG00000005022|ENST00000317881|SLC25A5;ENST00000463551.1_1_X:118604271-118605018:+|nuORF ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.4581298828125 1 882.456724 881.449448 0.70487 0.00062201 -0.065973 -5.8219E-05 0.63889 0.0005638 882.4565994791833 46.077 0.27129 46.077 45.939 46.21 0 32 12 3 0 0 0 0.00856 2 25239 25121;25239 100.37 42.9 1 6335400 63399 295 42150 43105 74068;74069 74069 0.003981032521892303 TAVAGLTSY 9 Unmodified _TAVAGLTSY_ 0 0 0 ENSG00000005022|ENST00000317881|SLC25A5;ENST00000463551.1_1_X:118604271-118605018:+|nuORF ENSG00000005022|ENST00000317881|SLC25A5 ENSG00000005022|ENST00000317881|SLC25A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7320251464844 2 441.732 881.449448 0.90857 0.00040134 -0.7277 -0.00032145 0.18087 7.9896E-05 441.73176199460283 46.119 0.27445 46.119 45.957 46.232 0 20 12 2 0 0 0 0.038285 1 25181 25181 50.855 26.181 1 2705200 63400 295 42150 43105 74070 74070 0.003981032521892303 TAVAGVVSY 9 Unmodified _TAVAGVVSY_ 0 0 0 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 866.4612426757812 1 866.46181 865.454533 -0.10624 -9.2057E-05 -0.079894 -6.9225E-05 -0.18614 -0.00016128 866.46164230056 45.357 0.22257 45.357 45.189 45.412 0 18 11 2 0 0 0 0.00856 1 24672 24672 100.37 48.103 1 11868000 63401 7835 42151 43106 74071 74071 0.0164240711480943 TAVAGVVSY 9 Unmodified _TAVAGVVSY_ 0 0 0 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 ENSG00000169100|ENST00000381401|SLC25A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 866.4638671875 1 866.46181 865.454533 0.68121 0.00059024 0.34475 0.00029871 1.026 0.00088896 866.4619263419476 52.954 0.3357 47.15 47.03 47.365 -5.8042 29 18 2 0 0 0 0.0082661 1 33449 33449 92.491 40.223 1 30963000 63402 7835 42151 43106 74072 74072 0.0164240711480943 TAVATFLY 8 Unmodified _TAVATFLY_ 0 0 0 ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 ENSG00000185825|ENST00000345046|BCAP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 885.4698486328125 1 885.471646 884.46437 -0.67833 -0.00060064 0.039182 3.4694E-05 -0.63915 -0.00056595 885.4717578477719 69.976 0.20106 69.497 69.314 69.515 -0.47903 11 8 2 0 0 0 0.74163 1 38189 38189 13.508 0 1 960910 63403 9418 42152 43107 74073 74073 0.017515951201858115 TAVAVFELL 9 Unmodified _TAVAVFELL_ 0 0 0 ENST00000527634.5_2_11:66512258-66526561:+|nuORF ENST00000527634.5_2_11:66512258-66526561:+|nuORF ENST00000527634.5_2_11:66512258-66526561:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 962.55615234375 1 962.55571 961.548434 0.24194 0.00023288 2.3251 0.0022381 2.5671 0.002471 962.5569487510384 99.811 0.11589 99.654 99.583 99.699 -0.1575 5 3 2 0 0 0 0.026094 1 54493 54493 57.471 0 1 713830 63404 14837 42153 43108 74074 74074 0.06612126217100922 TAVDAVHEI 9 Unmodified _TAVDAVHEI_ 0 0 0 REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF REV__ENST00000555451.1_1_14:104166863-104169620:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.2665405273438 2 477.748182 953.481811 0.62965 0.00030081 -1.084 -0.00051786 -0.45432 -0.00021705 477.74817367451936 45.567 0.48388 40.612 40.348 40.832 -4.9549 58 32 2 0 0 0 0.12183 1 27840 27840 34.102 12.565 1 44174000 + 63405 28769 42154 43109 74075 74075 0.0032089065517766358 TAVDEIKLL 9 Unmodified _TAVDEIKLL_ 0 0 0 nc|ENSG00000184343|Q9UPE1-2|SRPK3;nc|ENSG00000184343|Q9UPE1-3|SRPK3;nc|ENSG00000184343|Q9UPE1-4|SRPK3;ENSG00000184343|ENST00000370101|SRPK3 nc|ENSG00000184343|Q9UPE1-2|SRPK3 nc|ENSG00000184343|Q9UPE1-2|SRPK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2981262207031 2 501.297507 1000.58046 0.58549 0.0002935 1.2697 0.00063649 1.8552 0.00092999 501.29804438982364 67.237 0.23208 67.237 67.085 67.317 0 13 9 2 0 0 0 0.41742 1 37492 37492 11.64 0 1 555160 63406 9246 42155 43110 74076 74076 0.08019493900224006 TAVDKVELF 9 Unmodified _TAVDKVELF_ 0 0 0 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2807006835938 2 511.281857 1020.54916 -0.24208 -0.00012377 0.027001 1.3805E-05 -0.21508 -0.00010997 511.28155581287785 55.997 0.22769 55.997 55.934 56.162 0 26 10 3 0 0 0 0.015688 1 31129 31129 67.838 13.065 1 4600900 63407 2837 42156 43111 74077 74077 0.03970920866140659 TAVDSLVAY 9 Unmodified _TAVDSLVAY_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4820556640625 1 938.482939 937.475663 -0.58066 -0.00054494 0.53392 0.00050108 -0.046742 -4.3867E-05 938.4829958772565 55.835 0.27967 55.835 55.69 55.969 0 51 24 3 0 0 0 0.012148 2 31063 30959;31063 74.423 10.186 1 12680000 63408 4777 42157 43112 74078;74079 74079 0.00442372423674442 TAVDSLVAY 9 Unmodified _TAVDSLVAY_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7446594238281 2 469.745108 937.475663 -0.26426 -0.00012414 -0.65764 -0.00030892 -0.9219 -0.00043306 469.74473161211796 55.828 0.34515 55.828 55.661 56.007 0 65 30 3 0 0 0 0.010877 2 31072 30965;31072 77.984 23.211 1 33814000 63409 4777 42157 43112 74080;74081 74081 0.00442372423674442 TAVDSLVAY 9 Unmodified _TAVDSLVAY_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7453002929688 2 469.745108 937.475663 1.3683 0.00064276 -0.9597 -0.00045081 0.40862 0.00019195 469.7451400749962 64.285 0.48593 58.11 57.861 58.347 -6.1757 77 25 4 0 0 0 0.016184 2 41540 41540;41673 67.344 21.323 1 56371000 63410 4777 42157 43112 74082;74083 74082 0.00442372423674442 TAVDSLVAY 9 Unmodified _TAVDSLVAY_ 0 0 0 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 ENSG00000136026|ENST00000378026|CKAP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 938.4833374023438 1 938.482939 937.475663 1.2095 0.0011351 -0.4292 -0.00040279 0.78025 0.00073226 938.4822424668513 64.278 0.34514 58.102 57.935 58.28 -6.1757 31 17 2 0 0 0 0.012148 2 41575 41575;41711 74.423 16.951 1 16753000 63411 4777 42157 43112 74084;74085 74084 0.00442372423674442 TAVEKVEK 8 Unmodified _TAVEKVEK_ 0 0 0 REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 452.2615356445312 2 452.260925 902.507297 NaN NaN NaN NaN NaN NaN NaN 36.876 1 32.593 32.093 33.093 -4.2835 0 0 0 0.94061 1 21576 21576 12.532 0 1 + 63412 19298 42158 43113 74086 74086 0.05214365177619129 TAVELLDVF 9 Unmodified _TAVELLDVF_ 0 0 0 nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;nc|ENSG00000167925|Q8N2G8-2|GHDC nc|ENSG00000167925|Q8N2G8-3|GHDC nc|ENSG00000167925|Q8N2G8-3|GHDC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7763366699219 2 503.776408 1005.53826 NaN NaN NaN NaN NaN NaN NaN 97.119 1 97.119 96.619 97.619 0 0 0 0 0.76439 1 53663 53663 7.2892 2.5332 1 63413 7684 42159 43114 74087 74087 0.03571518491855841 TAVENMPSL 9 Oxidation (M) _TAVENM(Oxidation (M))PSL_ TAVENM(1)PSL TAVENM(71)PSL 0 0 1 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2344665527344 2 489.23405 976.453547 -0.45355 -0.00022189 0.29719 0.0001454 -0.15636 -7.6495E-05 489.2343201213208 34.661 0.2968 34.661 34.496 34.793 0 39 14 4 0 0 0 0.013323 1 18241 18241 71.134 18.865 1 8499000 63414 7904 42160 43115 74088 74088 1343 -0.03562175316403682 TAVENMPSL 9 Unmodified _TAVENMPSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2369995117188 2 481.236593 960.458632 0.5014 0.00024129 0.65773 0.00031652 1.1591 0.00055781 481.23681174186765 53.115 0.36415 53.115 52.88 53.244 0 30 16 3 0 0 0 0.015445 1 29436 29436 68.081 22.06 1 2894400 63415 7904 42160 43116 74089 74089 -0.02317871453783482 TAVENMPSL 9 Unmodified _TAVENMPSL_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2368469238281 2 481.236593 960.458632 1.2028 0.00057883 2.5091 0.0012075 3.7119 0.0017863 481.23705893813917 61.053 0.40756 54.906 54.647 55.055 -6.1478 47 21 3 0 0 0 0.0085164 2 39254 39254;39257 99.799 41.12 1 41850000 63416 7904 42160 43116 74090;74091 74090 -0.02317871453783482 TAVESGCIHY 10 Carbamidomethyl (C) _TAVESGC(Carbamidomethyl (C))IHY_ TAVESGC(1)IHY TAVESGC(61)IHY 0 1 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.757080078125 2 568.755681 1135.49681 -0.20932 -0.00011905 0.71565 0.00040703 0.50633 0.00028798 568.7561284294649 31.839 0.22235 31.839 31.739 31.961 0 24 10 3 0 0 0 0.043729 1 16589 16589 61.357 43.211 1 3817500 63417 10934 42161 43117 74092 74092 962 -0.06551985539113048 TAVESGCIHY 10 Carbamidomethyl (C) _TAVESGC(Carbamidomethyl (C))IHY_ TAVESGC(1)IHY TAVESGC(55)IHY 0 1 0 nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA nc|ENSG00000278540|Q13085-3|ACACA nc|ENSG00000278540|Q13085-3|ACACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7559814453125 2 568.755681 1135.49681 0.75907 0.00043172 0.82534 0.00046942 1.5844 0.00090114 568.7571054329412 36.25 0.44693 32.058 31.77 32.217 -4.1928 44 26 3 0 0 0 0.063761 1 21158 21158 54.774 33.237 1 25372000 63418 10934 42161 43117 74093 74093 962 -0.06551985539113048 TAVETAVLL 9 Unmodified _TAVETAVLL_ 0 0 0 nc|ENSG00000163468|P49368-2|CCT3;ENSG00000163468|ENST00000295688|CCT3 nc|ENSG00000163468|P49368-2|CCT3 nc|ENSG00000163468|P49368-2|CCT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7714233398438 2 458.771126 915.527698 0.74135 0.00034011 0.089455 4.104E-05 0.8308 0.00038115 458.77103974033895 66.818 0.27009 66.818 66.701 66.971 0 17 12 2 0 0 0 0.12841 1 37301 37301 30.225 7.0764 1 1170900 63419 6997 42162 43118 74094 74094 0.06655535837444404 TAVGDHEEF 9 Unmodified _TAVGDHEEF_ 0 0 0 ENST00000477409.1_1_2:97001567-97024936:+|nuORF;nc|ENSG00000121152|Q15003-2|NCAPH;ENSG00000121152|ENST00000240423|NCAPH ENST00000477409.1_1_2:97001567-97024936:+|nuORF ENST00000477409.1_1_2:97001567-97024936:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2274780273438 2 502.719621 1003.42469 -0.27464 -0.00013807 -0.48833 -0.00024549 -0.76297 -0.00038356 502.7194342643764 27.291 0.253 27.291 27.174 27.427 0 17 12 2 0 0 0 0.20139 1 14021 14021 10.824 5.5933 1 3586100 63420 3569 42163 43119 74095 74095 -0.07688576621183074 TAVGIFSVL 9 Unmodified _TAVGIFSVL_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000547260.5_1_12:49168067-49168277:-|nuORF;ENST00000552099.5_1_12:49167650-49168524:-|nuORF nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.529296875 1 906.529495 905.522219 1.5101 0.001369 -1.8619 -0.0016879 -0.3518 -0.00031891 906.5275642533742 100.87 0.082237 94.696 94.651 94.734 -6.1757 6 4 2 0 0 0 0.0090851 1 67579 67579 85.357 14.641 1 16440000 63421 8404 42164 43120 74096 74096 0.06567857045627079 TAVGPAHFY 9 Unmodified _TAVGPAHFY_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2;nc|ENSG00000105854|Q15165-3|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.1756896972656 2 481.74016 961.465767 -0.34819 -0.00016774 0.76133 0.00036676 0.41314 0.00019903 481.7400938556495 41.176 0.21606 41.176 41.065 41.281 0 14 10 2 0 0 0 0.11303 1 22153 22153 26.341 19.052 1 1863100 63422 2371 42165 43121 74097 74097 -0.01650770791047762 TAVGPAHFY 9 Unmodified _TAVGPAHFY_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2;nc|ENSG00000105854|Q15165-3|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7403259277344 2 481.74016 961.465767 -0.082837 -3.9906E-05 -0.21853 -0.00010527 -0.30137 -0.00014518 481.7399359391652 41.515 0.1748 41.212 41.112 41.287 -0.30304 10 7 2 0 0 0 0.16776 1 22016 22016 26.341 13.81 1 2601900 63423 2371 42165 43121 74098 74098 -0.01650770791047762 TAVGPAHFY 9 Unmodified _TAVGPAHFY_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2;nc|ENSG00000105854|Q15165-3|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7403564453125 2 481.74016 961.465767 0.5872 0.00028288 -0.3759 -0.00018109 0.2113 0.00010179 481.7402834820363 46.298 0.21599 41.265 41.163 41.379 -5.0324 21 14 2 0 0 0 0.013419 1 28628 28628 70.865 38.559 1 14305000 63424 2371 42165 43121 74099 74099 -0.01650770791047762 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.5399780273438 1 936.54006 935.532783 0.18668 0.00017483 -0.97853 -0.00091643 -0.79185 -0.0007416 936.538788349472 76.916 0.41177 76.916 76.708 77.12 0 54 27 3 0 0 0 0.042911 2 42799 42697;42799 48.346 6.9062 1 6479500 63425 7074 42166 43122 74100;74101 74101 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5419921875 1 936.54006 935.532783 -0.61249 -0.00057362 0.14355 0.00013444 -0.46894 -0.00043918 936.5400949630642 77.37 0.64143 76.888 76.603 77.244 -0.4826 88 29 4 0 0 0 0.031062 2 42247 42247;42452 54.774 12.679 1 60018000 63426 7074 42166 43122 74102;74103 74102 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7738037109375 2 468.773668 935.532783 -0.55956 -0.00026231 0.10679 5.0062E-05 -0.45276 -0.00021224 468.7737459292103 77.322 0.38456 76.84 76.647 77.032 -0.4826 47 17 3 0 0 0 0.016184 2 42275 42275;42378 67.344 13.768 1 20863000 63427 7074 42166 43122 74104;74105 74104 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 936.5382080078125 1 936.54006 935.532783 0.4174 0.00039091 0.13332 0.00012486 0.55072 0.00051577 936.5399805447643 76.808 0.54495 76.858 76.676 77.221 0.05011 44 22 3 0 0 0 0.042911 1 42321 42321 48.346 6.2513 1 8332800 63428 7074 42166 43122 74106 74106 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.7743225097656 2 468.773668 935.532783 0.063406 2.9723E-05 0.75763 0.00035516 0.82103 0.00038488 468.7739796527799 76.803 0.26092 76.853 76.698 76.959 0.05011 23 10 3 0 0 0 0.087258 1 42382 42382 36.044 7.5574 1 2479800 63429 7074 42166 43122 74107 74107 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 936.5426025390625 1 936.54006 935.532783 0.21169 0.00019826 0.078384 7.341E-05 0.29007 0.00027166 936.5400338126057 84.559 0.80684 78.383 78.05 78.857 -6.1757 141 46 5 0 0 0 0.012148 3 55435 55435;55571;55704 74.423 14.033 1 195430000 63430 7074 42166 43122 74108;74109;74110 74108 0.062438397000505574 TAVGSILLY 9 Unmodified _TAVGSILLY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7735900878906 2 468.773668 935.532783 0.26815 0.0001257 0.17458 8.1839E-05 0.44273 0.00020754 468.773743440162 84.548 0.84435 78.372 78.033 78.877 -6.1757 118 48 3 0 0 0 0.016184 4 55723 55455;55588;55723;55853 67.344 21.323 1 177110000 63431 7074 42166 43122 74111;74112;74113;74114 74113 0.062438397000505574 TAVHAPLWTT 10 Unmodified _TAVHAPLWTT_ 0 0 0 ENST00000322764.9_1_7:143087775-143087871:+|nuORF ENST00000322764.9_1_7:143087775-143087871:+|nuORF ENST00000322764.9_1_7:143087775-143087871:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1981201171875 3 366.197708 1095.57129 1.5133 0.00055418 -0.36283 -0.00013287 1.1505 0.00042131 366.19756066544863 34.667 0.50269 30.572 30.366 30.869 -4.0951 87 29 4 0 0 0 0.52888 1 19940 19940 8.9762 4.2603 1 130950000 63432 11789 42167 43123 74115 74115 0.027331453345368573 TAVHIQLIM 9 Oxidation (M) _TAVHIQLIM(Oxidation (M))_ TAVHIQLIM(1) TAVHIQLIM(59) 0 0 1 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2925415039062 2 521.291702 1040.56885 0.34068 0.00017759 0.55801 0.00029089 0.89869 0.00046848 521.2920961323325 53.449 0.38409 52.997 52.783 53.167 -0.45173 43 18 3 0 0 0 0.024882 2 28860 28860;28967 58.679 12.658 1 6198000 63433 5855 42168 43124 74116;74117 74116 1054 0.05018973605251631 TAVHIQLIM 9 Oxidation (M) _TAVHIQLIM(Oxidation (M))_ TAVHIQLIM(1) TAVHIQLIM(50) 0 0 1 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF;ENST00000481728.2_1_8:25209198-25222229:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2926025390625 2 521.291702 1040.56885 1.3788 0.00071878 -1.4998 -0.00078182 -0.12093 -6.3039E-05 521.2909014944042 59.124 0.41047 53.049 52.817 53.228 -6.0745 34 22 2 0 0 0 0.039985 1 37861 37861 49.933 11.959 1 17311000 63434 5855 42168 43124 74118 74118 1054 0.05018973605251631 TAVHLVDSHY 10 Unmodified _TAVHLVDSHY_ 0 0 0 ENSG00000142751|ENST00000374135|GPN2 ENSG00000142751|ENST00000374135|GPN2 ENSG00000142751|ENST00000374135|GPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1925659179688 3 381.192734 1140.55637 0.050212 1.9141E-05 0.71851 0.00027389 0.76873 0.00029303 381.1928705280585 31.286 0.26546 31.286 31.132 31.398 0 30 12 3 0 0 0 0.13008 1 16258 16258 42.312 32.769 1 4081200 63435 5446 42169 43125 74119 74119 -0.008283465334216089 TAVHLVDSHY 10 Unmodified _TAVHLVDSHY_ 0 0 0 ENSG00000142751|ENST00000374135|GPN2 ENSG00000142751|ENST00000374135|GPN2 ENSG00000142751|ENST00000374135|GPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1947631835938 3 381.192734 1140.55637 1.1163 0.00042554 1.4975 0.00057085 2.6139 0.00099639 381.19284193391087 35.29 0.34395 31.195 31.023 31.367 -4.0951 43 20 3 0 0 0 0.2667 1 20457 20457 29.437 23.705 1 21984000 63436 5446 42169 43125 74120 74120 -0.008283465334216089 TAVHVLETY 9 Unmodified _TAVHVLETY_ 0 0 0 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7490844726562 2 516.771657 1031.52876 -0.20549 -0.00010619 -0.20572 -0.00010631 -0.41121 -0.0002125 516.771807580547 41.61 0.32782 41.61 41.441 41.769 0 41 16 4 0 0 0 0.1325 1 22433 22433 32.305 7.6316 1 18711000 63437 2870 42170 43126 74121 74121 0.014257502063401262 TAVHYAAAY 9 Unmodified _TAVHYAAAY_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7372131347656 2 483.737617 965.460681 -0.21085 -0.000102 -0.12078 -5.8427E-05 -0.33164 -0.00016043 483.73760434473405 29.067 0.19993 29.067 28.982 29.182 0 13 9 2 0 0 0 0.095405 1 15055 15055 34.102 15.967 1 1992900 63438 5176 42171 43127 74122 74122 -0.02343074653686017 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.1737670898438 3 357.173562 1068.49886 -0.47016 -0.00016793 0.83206 0.00029719 0.3619 0.00012926 357.1738529638297 19.239 0.19687 19.239 19.16 19.357 0 37 12 4 0 0 0 0.05447 1 9605 9605 47.594 40.964 1 9304000 63439 10723 42172 43128 74123 74123 -0.032651887390102274 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2564086914062 2 535.256705 1068.49886 -0.27957 -0.00014964 0.14134 7.5654E-05 -0.13823 -7.3989E-05 535.256602120026 19.26 0.16726 19.26 19.173 19.34 0 27 10 4 0 0 0 0.0024112 1 9614 9614 129.77 99.136 1 3498800 63440 10723 42172 43128 74124 74124 -0.032651887390102274 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.257080078125 2 535.256705 1068.49886 NaN NaN NaN NaN NaN NaN NaN 19.234 1 19.242 18.742 19.742 0.0078487 0 0 0 0.7818 1 9778 9778 6.7232 3.988 1 63441 10723 42172 43128 74125 74125 -0.032651887390102274 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.757568359375 2 535.256705 1068.49886 1.1234 0.00060133 -1.6881 -0.00090356 -0.56464 -0.00030223 535.2558799272175 21.276 0.2577 18.583 18.453 18.711 -2.693 34 21 2 0 0 0 0.0074135 2 11364 11364;11373 110.67 80.038 1 9096000 63442 10723 42172 43128 74126;74127 74126 -0.032651887390102274 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1737670898438 3 357.173562 1068.49886 1.8794 0.00067126 -1.0012 -0.0003576 0.87817 0.00031366 357.17310879815 21.27 0.32404 18.577 18.414 18.738 -2.693 70 26 4 0 0 0 0.022193 1 11372 11372 63.961 54.417 1 28851000 63443 10723 42172 43128 74128 74128 -0.032651887390102274 TAVIDHHNY 9 Unmodified _TAVIDHHNY_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.173562 1068.49886 0.001365 4.8753E-07 1.4166 0.00050599 1.418 0.00050648 357.1740985982911 19.229 0.13623 19.237 19.164 19.301 0.0078487 -0.001212 0.00035584 NaN 47.594 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 775340 63444 10723 42172 43128 -0.032651887390102274 TAVILAMTML 10 Unmodified _TAVILAMTML_ 0 0 0 REV__ENSG00000151690|ENST00000392328|MFSD6 REV__ENSG00000151690|ENST00000392328|MFSD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.299560546875 2 532.298139 1062.58172 0.60655 0.00032287 1.2357 0.00065775 1.8422 0.00098062 532.2987649594029 30.072 0.51019 29.991 29.77 30.28 -0.080429 55 19 4 0 0 0 0.69377 1 15728 15728 3.5965 0.60125 1 18450000 + 63445 21083 42173 43129 74129 74129 0.05293668673130014 TAVIPCFPY 9 Carbamidomethyl (C) _TAVIPC(Carbamidomethyl (C))FPY_ TAVIPC(1)FPY TAVIPC(42)FPY 0 1 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.269775390625 2 534.265153 1066.51575 1.0891 0.00058185 2.4776 0.0013237 3.5666 0.0019055 534.266235172046 86.884 0.25161 80.708 80.624 80.876 -6.1757 21 13 2 0 0 0 0.06187 1 57296 57296 42.095 18.074 1 9123500 63446 1999 42174 43130 74130 74130 198 -0.014844041774040306 TAVIPTNVF 9 Unmodified _TAVIPTNVF_ 0 0 0 ENST00000531473.5_1_8:144695082-144696778:-|nuORF;ENSG00000104522|ENST00000425753|GFUS ENST00000531473.5_1_8:144695082-144696778:-|nuORF ENST00000531473.5_1_8:144695082-144696778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2713623046875 2 481.271293 960.528032 0.79864 0.00038436 -0.096332 -4.6362E-05 0.70231 0.000338 481.2712800359254 73.316 0.42368 72.84 72.695 73.118 -0.47588 39 18 3 0 0 0 0.30562 2 40088 40088;40192 16.942 3.4344 1 3092200 63447 2213 42175 43131 74131;74132 74131 0.04618955557282334 TAVIPTNVF 9 Unmodified _TAVIPTNVF_ 0 0 0 ENST00000531473.5_1_8:144695082-144696778:-|nuORF;ENSG00000104522|ENST00000425753|GFUS ENST00000531473.5_1_8:144695082-144696778:-|nuORF ENST00000531473.5_1_8:144695082-144696778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 961.5372924804688 1 961.535309 960.528032 0.59275 0.00056995 0.21119 0.00020307 0.80394 0.00077302 961.5358200304478 73.351 0.39708 72.875 72.695 73.092 -0.47588 38 17 3 0 0 0 0.1685 1 40191 40191 26.268 4.5215 1 3546100 63448 2213 42175 43131 74133 74133 0.04618955557282334 TAVIPTNVF 9 Unmodified _TAVIPTNVF_ 0 0 0 ENST00000531473.5_1_8:144695082-144696778:-|nuORF;ENSG00000104522|ENST00000425753|GFUS ENST00000531473.5_1_8:144695082-144696778:-|nuORF ENST00000531473.5_1_8:144695082-144696778:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 961.535888671875 1 961.535309 960.528032 0.63857 0.00061401 0.33291 0.0003201 0.97148 0.00093411 961.53585623432 80.871 0.38354 74.695 74.462 74.845 -6.1757 33 20 2 0 0 0 0.008513 2 53094 52972;53094 99.755 30.65 1 14179000 63449 2213 42175 43131 74134;74135 74135 0.04618955557282334 TAVKEDEINVY 11 Unmodified _TAVKEDEINVY_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-3|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.8213500976562 2 640.822075 1279.6296 0.26399 0.00016917 -0.16812 -0.00010774 0.095871 6.1436E-05 640.8218185174277 38.492 0.30227 38.492 38.379 38.682 0 42 16 4 0 0 0 0.073778 2 20517 20517;20627 45.74 30.491 1 11846000 63450 636 42176 43132 74136;74137 74136 0.0009673739853042207 TAVKEDEINVY 11 Unmodified _TAVKEDEINVY_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-3|TRIO nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.82373046875 2 640.822075 1279.6296 0.33724 0.00021611 -0.1526 -9.7789E-05 0.18464 0.00011832 640.8218921602969 44.067 0.29944 39.302 39.171 39.471 -4.7648 31 19 2 0 0 0 0.0086238 1 26811 26811 69.338 44.347 1 16063000 63451 636 42176 43132 74138 74138 0.0009673739853042207 TAVKNDYEM 9 Unmodified _TAVKNDYEM_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7460327148438 2 535.744782 1069.47501 0.54868 0.00029395 0.64865 0.00034751 1.1973 0.00064146 535.7449843727911 28.352 0.36 25.204 25.041 25.401 -3.1482 38 18 3 0 0 0 0.013609 1 15788 15788 70.332 35.93 1 16297000 63452 4401 42177 43133 74139 74139 -0.056947902877027445 TAVKNDYEM 9 Oxidation (M) _TAVKNDYEM(Oxidation (M))_ TAVKNDYEM(1) TAVKNDYEM(48) 0 0 1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MSMS AL20221201_MKP_PDAC_01 4 543.7410278320312 2 543.742239 1085.46993 NaN NaN NaN NaN NaN NaN NaN 17.405 1 14.818 14.318 15.318 -2.5866 0 0 0 0.08368 1 9097 9097 47.594 27.141 1 63453 4401 42177 43134 74140 74140 801 -0.06939094150334313 TAVLTAHQP 9 Unmodified _TAVLTAHQP_ 0 0 0 nc|ENSG00000159263|Q14190-2|SIM2;ENST00000481185.1_1_21:38072046-38117571:+|nuORF;ENSG00000159263|ENST00000290399|SIM2;ENSG00000112246|ENST00000369208|SIM1 nc|ENSG00000159263|Q14190-2|SIM2;ENSG00000112246|ENST00000369208|SIM1 nc|ENSG00000159263|Q14190-2|SIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2587585449219 2 469.258717 936.50288 0.80096 0.00037586 -1.1676 -0.00054791 -0.36664 -0.00017205 469.2581270376616 49.791 0.4956 44.252 44.05 44.546 -5.5391 72 31 3 0 0 0 0.06187 1 31189 31189 42.095 21.641 1 65513000 63454 6642;2873 42178 43135 74141 74141 0.032089007547028814 TAVPTLLKY 9 Unmodified _TAVPTLLKY_ 0 0 0 ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17 ENST00000571029.1_1_17:6544987-6546336:+|nuORF ENST00000571029.1_1_17:6544987-6546336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.3033752441406 2 503.302593 1004.59063 0.02589 1.303E-05 -0.41667 -0.00020971 -0.39078 -0.00019668 503.30252094264205 57.54 0.28656 57.05 56.88 57.166 -0.48974 31 13 3 0 0 0 0.078314 2 31226 31226;31321 38.176 15.439 1 9184600 63455 4124 42179 43136 74142;74143 74142 0.08852101625473097 TAVPTLLKY 9 Unmodified _TAVPTLLKY_ 0 0 0 ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17 ENST00000571029.1_1_17:6544987-6546336:+|nuORF ENST00000571029.1_1_17:6544987-6546336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.3021545410156 2 503.302593 1004.59063 0.77535 0.00039024 -0.32997 -0.00016607 0.44539 0.00022416 503.3024647024257 57.173 0.31952 57.107 56.978 57.297 -0.066036 32 15 3 0 0 0 0.047788 1 31087 31087 45.7 17.213 1 12715000 63456 4124 42179 43136 74144 74144 0.08852101625473097 TAVPTLLKY 9 Unmodified _TAVPTLLKY_ 0 0 0 ENST00000571029.1_1_17:6544987-6546336:+|nuORF;ENSG00000129235|ENST00000250101|TXNDC17 ENST00000571029.1_1_17:6544987-6546336:+|nuORF ENST00000571029.1_1_17:6544987-6546336:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2954406738281 2 503.302593 1004.59063 1.3492 0.00067905 0.37166 0.00018706 1.7209 0.00086611 503.3032737736235 62.926 0.61689 56.75 56.526 57.143 -6.1757 61 32 3 0 0 0 0.062454 2 40544 40544;40685 41.956 5.8701 1 55311000 63457 4124 42179 43136 74145;74146 74145 0.08852101625473097 TAVQEPSPGA 10 Unmodified _TAVQEPSPGA_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.4705200195312 1 956.468352 955.461075 -0.82469 -0.00078879 1.0392 0.00099392 0.21447 0.00020513 956.4690782412627 34.292 0.22753 34.292 34.175 34.402 0 19 11 2 0 0 0 0.56348 1 18024 18024 13.042 0.80181 1 2354500 63458 9379 42180 43137 74147 74147 -0.018436997244634767 TAVRIILDMY 10 Unmodified _TAVRIILDMY_ 0 0 0 ENSG00000116198|ENST00000378230|CEP104;ENST00000495701.1_1_1:3746348-3747783:-|nuORF ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.826171875 2 597.831191 1193.64783 0.74949 0.00044807 -3.612 -0.0021594 -2.8625 -0.0017113 597.8284473687769 95.429 0.23106 89.253 89.12 89.351 -6.1757 14 12 2 0 0 0 0.32493 1 63181 63181 26.021 12.978 1 8862000 63459 3204 42181 43138 74148 74148 0.05875200839545869 TAVRTNSTF 9 Unmodified _TAVRTNSTF_ 0 0 0 ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP ENSG00000197746|ENST00000394936|PSAP ENSG00000197746|ENST00000394936|PSAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2536315917969 2 498.759081 995.503609 0.41713 0.00020805 1.0094 0.00050345 1.4265 0.0007115 498.75978395648514 67.581 0.50333 67.098 66.866 67.37 -0.48218 24 21 2 0 0 0 0.21367 1 36795 36795 4.756 0 1 927530 63460 9995 42182 43139 74149 74149 0.005676954037767246 TAVSEWTEY 9 Unmodified _TAVSEWTEY_ 0 0 0 ENSG00000113649|ENST00000679501|TCERG1;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF ENSG00000113649|ENST00000679501|TCERG1 ENSG00000113649|ENST00000679501|TCERG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2425537109375 2 543.242929 1084.47131 0.29987 0.0001629 -2.1399 -0.0011625 -1.8401 -0.0009996 543.241475015093 52.717 0.4895 52.717 52.53 53.02 0 38 22 2 0 0 0 0.095405 1 29160 29160 34.102 20.595 1 8606300 63461 2988 42183 43140 74150 74150 -0.06755136789888638 TAVSEWTEY 9 Unmodified _TAVSEWTEY_ 0 0 0 ENSG00000113649|ENST00000679501|TCERG1;nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENST00000513298.5_1_5:145838810-145849312:+|nuORF;ENST00000507175.5_1_5:145826912-145859658:+|nuORF ENSG00000113649|ENST00000679501|TCERG1 ENSG00000113649|ENST00000679501|TCERG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2423706054688 2 543.242929 1084.47131 0.97171 0.00052787 -1.0484 -0.00056954 -0.076702 -4.1668E-05 543.2422683281544 60.587 0.37253 54.439 54.257 54.63 -6.1478 34 19 2 0 0 0 0.06187 2 38966 38966;39104 42.095 26.247 1 29128000 63462 2988 42183 43140 74151;74152 74151 -0.06755136789888638 TAVSYLEVY 9 Unmodified _TAVSYLEVY_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7662963867188 2 522.76604 1043.51753 0.34047 0.00017798 1.0264 0.00053657 1.3669 0.00071455 522.7664945001268 65.381 0.40245 65.381 65.169 65.572 0 47 15 4 0 0 0 0.012148 2 36514 36420;36514 74.423 45.936 1 15060000 63463 3590 42184 43141 74153;74154 74154 -0.0024907188781071454 TAVSYLEVY 9 Unmodified _TAVSYLEVY_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.765625 2 522.76604 1043.51753 -0.0549 -2.87E-05 -1.8382 -0.00096097 -1.8931 -0.00098967 522.765074845448 65.928 0.22528 65.444 65.337 65.562 -0.48428 16 9 3 0 0 0 0.2001 1 36007 36007 23.148 2.2772 1 3313200 63464 3590 42184 43141 74155 74155 -0.0024907188781071454 TAVTLFCSI 9 Unmodified _TAVTLFCSI_ 0 0 0 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 ENSG00000163328|ENST00000392552|GPR155 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7474975585938 2 477.751879 953.489204 0.56279 0.00026887 -1.5141 -0.00072335 -0.95128 -0.00045448 477.75118640648674 38.968 0.5786 38.968 38.598 39.177 0 80 26 4 0 0 0 0.010818 1 20749 20749 78.149 32.128 1 33659000 63465 6978 42185 43142 74156 74156 0.010599069312661413 TAVTTVPSM 9 Oxidation (M) _TAVTTVPSM(Oxidation (M))_ TAVTTVPSM(1) TAVTTVPSM(55) 0 0 1 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.453857421875 1 922.45501 921.447733 -0.47726 -0.00044025 0.50617 0.00046692 0.028913 2.6671E-05 922.4548486531972 27.059 0.1895 27.059 26.93 27.12 0 12 8 2 0 0 0 0.031062 1 13912 13912 54.774 26.287 1 1303700 63466 6092 42186 43143 74157 74157 1084 -0.016132738280589365 TAVTTVPSM 9 Oxidation (M) _TAVTTVPSM(Oxidation (M))_ TAVTTVPSM(1) TAVTTVPSM(57) 0 0 1 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7311096191406 2 461.731143 921.447733 0.95131 0.00043925 -0.71309 -0.00032925 0.23822 0.00011 461.7309393181953 32.108 0.39154 28.412 28.246 28.638 -3.6958 32 22 2 0 0 0 0.026094 1 18242 18242 57.471 32.797 1 23730000 63467 6092 42186 43143 74158 74158 1084 -0.016132738280589365 TAVTTVPSM 9 Unmodified _TAVTTVPSM_ 0 0 0 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 MSMS AL20221201_MKP_PDAC_01 4 453.7339477539062 2 453.733686 905.452819 NaN NaN NaN NaN NaN NaN NaN 52.015 1 46.281 45.781 46.781 -5.7345 0 0 0 0.023279 1 32799 32799 74.423 36.272 1 63468 6092 42186 43144 74159 74159 -0.003689699654501055 TAVTTVPSM 9 Unmodified _TAVTTVPSM_ 0 0 0 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 ENSG00000151135|ENST00000280756|TMEM263 MSMS AL20221201_MKP_PDAC_01 4 453.7342834472656 2 453.733686 905.452819 NaN NaN NaN NaN NaN NaN NaN 52.204 1 46.469 45.969 46.969 -5.7345 0 0 0 0.023279 1 32943 32943 74.423 38.379 1 63469 6092 42186 43144 74160 74160 -0.003689699654501055 TAVTVNQSL 9 Unmodified _TAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7567443847656 2 466.756007 931.497461 0.8938 0.00041719 -1.4762E-05 -6.8903E-09 0.89379 0.00041718 466.75596271999314 38.759 0.37252 38.759 38.556 38.929 0 52 16 4 0 0 0 0.015445 2 20665 20665;20781 68.081 26.241 1 58204000 + 63470 165 42187 43145 74161;74162 74161 0.028971771722467565 TAVTVNQSL 9 Unmodified _TAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.5057373046875 1 932.504737 931.497461 0.79129 0.00073788 -0.005692 -5.3078E-06 0.7856 0.00073257 932.5047013326374 38.758 0.33091 38.758 38.598 38.929 0 43 14 4 0 0 0 3.2945E-16 2 20684 20684;20791 191.38 75.688 1 18717000 + 63471 165 42187 43145 74163;74164 74163 0.028971771722467565 TAVTVNQSL 9 Unmodified _TAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7563171386719 2 466.756007 931.497461 0.52577 0.00024541 -0.0627 -2.9266E-05 0.46307 0.00021614 466.75587844662334 45.53 0.78111 40.575 40.254 41.035 -4.9549 207 52 5 0 0 0 0.0082353 4 28039 27760;27897;28039;28183 103.75 42.278 1 1220700000 + 63472 165 42187 43145 74165;74166;74167;74168 74167 0.028971771722467565 TAVTVNQSL 9 Unmodified _TAVTVNQSL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.5067138671875 1 932.504737 931.497461 0.62492 0.00058274 -0.05765 -5.3759E-05 0.56727 0.00052898 932.5046096465379 45.529 0.59512 40.574 40.299 40.894 -4.9549 130 40 4 0 0 0 2.4219999999999997E-38 4 27779 27779;27919;28061;28216 225.01 106.94 1 357800000 + 63473 165 42187 43145 74169;74170;74171;74172 74169 0.028971771722467565 TAVTVNQSLL 10 Unmodified _TAVTVNQSLL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.299072265625 2 523.298039 1044.58152 0.36455 0.00019077 -0.0081 -4.2387E-06 0.35645 0.00018653 523.2979655689229 57.483 0.26955 56.993 56.836 57.106 -0.48974 20 12 2 0 0 0 0.027759 1 31221 31221 69.105 23.405 1 7391300 + 63474 165 42188 43146 74173 74173 0.06101708269147821 TAVTVNQSLL 10 Unmodified _TAVTVNQSLL_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2984619140625 2 523.298039 1044.58152 1.0574 0.00055334 0.45184 0.00023645 1.5092 0.00078978 523.2977405214289 64.846 0.44745 58.67 58.45 58.897 -6.1757 42 24 2 0 0 0 0.027759 2 42011 42011;42144 69.105 38.468 1 39305000 + 63475 165 42188 43146 74174;74175 74174 0.06101708269147821 TAVVLGKDLVP 11 Unmodified _TAVVLGKDLVP_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2274780273438 3 371.228897 1110.66486 NaN NaN NaN NaN NaN NaN NaN 50.206 1 50.157 49.657 50.657 -0.048824 0 0 0 0.94165 1 27146 27146 1.3296 0.25818 1 63476 4640 42189 43147 74176 74176 0.11395444716981729 TAVYKVSEY 9 Unmodified _TAVYKVSEY_ 0 0 0 ENSG00000178035|ENST00000326739|IMPDH2;ENST00000481274.1_1_3:49062288-49062724:-|nuORF;IMPDH2|p.R355Q|1|0.26|ENSG00000178035|chr3:49025212-49025212|C/T|missense_variant ENSG00000178035|ENST00000326739|IMPDH2;IMPDH2|p.R355Q|1|0.26|ENSG00000178035|chr3:49025212-49025212|C/T|missense_variant ENSG00000178035|ENST00000326739|IMPDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2705078125 2 530.27149 1058.52843 -0.55813 -0.00029596 -0.67276 -0.00035675 -1.2309 -0.00065271 530.2710923367554 32.911 0.1974 32.911 32.811 33.008 0 16 9 2 0 0 0 0.14 1 17226 17226 29.082 15.176 1 2374100 63477 8724;15931 42190 43148 74177 74177 0.0015033048648547265 TAWDEADVRF 10 Unmodified _TAWDEADVRF_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2796630859375 2 605.280377 1208.5462 0.2127 0.00012874 -0.10362 -6.2717E-05 0.10908 6.6023E-05 605.2805392680854 57.436 0.42041 57.436 57.111 57.532 0 68 18 6 0 0 0 0.0055438 1 31910 31910 96.936 58.962 1 36045000 63478 6691 42191 43149 74178 74178 -0.04972954258687423 TAWDEADVRF 10 Unmodified _TAWDEADVRF_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2772216796875 2 605.280377 1208.5462 0.29913 0.00018106 -3.7042 -0.0022421 -3.405 -0.002061 605.2778976907507 58.022 0.14597 57.532 57.41 57.556 -0.48974 13 6 3 0 0 0 0.087164 1 31530 31530 49.527 25.507 1 6517800 63479 6691 42191 43149 74179 74179 -0.04972954258687423 TAWDEADVRF 10 Unmodified _TAWDEADVRF_ 0 0 0 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 ENSG00000160190|ENST00000352133|SLC37A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.2806396484375 2 605.280377 1208.5462 1.0239 0.00061974 -0.60195 -0.00036435 0.42193 0.00025539 605.280141464969 64.093 0.51563 57.917 57.765 58.28 -6.1757 75 26 5 0 0 0 0.039874 2 41492 41492;41617 63.227 43.971 1 167800000 63480 6691 42191 43149 74180;74181 74180 -0.04972954258687423 TAWEDYIWF 9 Unmodified _TAWEDYIWF_ 0 0 0 ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.7778930664062 2 615.776939 1229.53933 0.76353 0.00047017 0.18889 0.00011631 0.95242 0.00058648 615.7777550564729 101.43 0.16425 95.256 95.144 95.309 -6.1757 13 8 2 0 0 0 0.05483 1 68067 68067 57.471 41.322 1 18668000 63481 3810 42192 43150 74182 74182 -0.06626267139267839 TAWEEENLSKY 11 Unmodified _TAWEEENLSKY_ 0 0 0 ENST00000491527.1_1_3:9976275-9976602:+|nuORF;ENST00000465716.1_1_3:9976275-9979984:+|nuORF;ENSG00000163703|ENST00000452070|CRELD1;nc|ENSG00000163703|Q96HD1-2|CRELD1 ENST00000491527.1_1_3:9976275-9976602:+|nuORF ENST00000491527.1_1_3:9976275-9976602:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3173828125 2 685.317157 1368.61976 -0.43491 -0.00029805 1.0785 0.00073911 0.64358 0.00044106 685.3177045152198 45.041 0.2298 45.041 44.959 45.189 0 21 11 3 0 0 0 0.041516 1 24550 24550 62.869 54.123 1 4801000 63482 7054 42193 43151 74183 74183 -0.04980450606853992 TAWEEENLSKY 11 Unmodified _TAWEEENLSKY_ 0 0 0 ENST00000491527.1_1_3:9976275-9976602:+|nuORF;ENST00000465716.1_1_3:9976275-9979984:+|nuORF;ENSG00000163703|ENST00000452070|CRELD1;nc|ENSG00000163703|Q96HD1-2|CRELD1 ENST00000491527.1_1_3:9976275-9976602:+|nuORF ENST00000491527.1_1_3:9976275-9976602:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 685.317157 1368.61976 1.2548 0.00085992 0.20336 0.00013936 1.4581 0.00099929 685.3170072394876 50.946 0.16226 45.297 45.154 45.316 -5.649 0.12799 -0.00079504 NaN 62.869 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 12369000 63483 7054 42193 43151 -0.04980450606853992 TAWEEKTLSKY 11 Unmodified _TAWEEKTLSKY_ 0 0 0 nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-3|CRELD2;nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;ENSG00000184164|ENST00000328268|CRELD2;nc|ENSG00000184164|Q6UXH1-5|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 MSMS AL20221201_MKP_PDAC_01 4 452.5665893554688 3 452.566237 1354.67688 NaN NaN NaN NaN NaN NaN NaN 39.854 1 35.324 34.824 35.824 -4.5294 0 0 0 0.29502 1 23714 23714 33.632 27.002 1 63484 14133 42194 43152 74184 74184 0.013730166695268053 TAWEEKTLSKY 11 Unmodified _TAWEEKTLSKY_ 0 0 0 nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF;nc|ENSG00000184164|Q6UXH1-3|CRELD2;nc|ENSG00000184164|Q6UXH1-2|CRELD2;nc|ENSG00000184164|Q6UXH1-4|CRELD2;ENSG00000184164|ENST00000328268|CRELD2;nc|ENSG00000184164|Q6UXH1-5|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 MSMS AL20221201_MKP_PDAC_01 4 452.2740478515625 3 452.566237 1354.67688 NaN NaN NaN NaN NaN NaN NaN 39.922 1 35.392 34.892 35.892 -4.5294 0 0 0 0.84279 1 23763 23763 10.016 3.3859 1 63485 14133 42194 43152 74185 74185 0.013730166695268053 TAWEEVRERF 10 Unmodified _TAWEEVRERF_ 0 0 0 nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B nc|ENSG00000110844|Q6NWY9-2|PRPF40B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.554443359375 3 441.554443 1321.6415 0.26324 0.00011624 -0.38272 -0.00016899 -0.11948 -5.2757E-05 441.55441204371164 48.913 0.22647 48.541 48.446 48.673 -0.37172 15 11 2 0 0 0 0.5012 1 26285 26285 16.275 10.751 1 1441800 63486 2746 42195 43153 74186 74186 -0.006456010676402002 TAWGDSGVYY 10 Unmodified _TAWGDSGVYY_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7423095703125 2 559.743096 1117.47164 1.0507 0.00058812 0.59407 0.00033252 1.6448 0.00092064 559.7434231574157 63.393 0.46893 57.218 57 57.469 -6.1757 69 26 3 0 0 0 0.063761 2 40886 40886;41033 54.774 52.268 1 45939000 63487 2355 42196 43154 74187;74188 74187 -0.08239717070046026 TAWHRRASP 9 Unmodified _TAWHRRASP_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.193359375 3 361.19318 1080.55771 -0.034227 -1.2362E-05 -0.25777 -9.3105E-05 -0.292 -0.00010547 361.19311500868724 15.035 0.55331 15.041 14.949 15.503 0.0057774 60 33 2 0 0 0 0.2324 1 7474 7474 19.626 4.6688 1 4398500 63488 13666 42197 43155 74189 74189 0.02065332345978277 TAWHRRASP 9 Unmodified _TAWHRRASP_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.19318 1080.55771 -0.59426 -0.00021464 -0.61032 -0.00022044 -1.2046 -0.00043509 361.1929371495439 15.155 0.2471 15.155 15.017 15.264 0 0.03087 -0.00031127 NaN 19.626 135 69 2 NaN NaN NaN NaN 0 NaN NaN 0 2803900 63489 13666 42197 43155 0.02065332345978277 TAWHRRASP 9 Unmodified _TAWHRRASP_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 361.19318 1080.55771 -0.57772 -0.00020867 -0.17355 -6.2684E-05 -0.75127 -0.00027135 361.19310965881124 15.148 0.33413 15.134 15.016 15.35 -0.014067 0.010417 0.00016201 NaN 19.626 238 116 3 NaN NaN NaN NaN 0 NaN NaN 0 4274700 63490 13666 42197 43155 0.02065332345978277 TAWLEIMTKY 10 Oxidation (M) _TAWLEIM(Oxidation (M))TKY_ TAWLEIM(1)TKY TAWLEIM(53)TKY 0 0 1 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3204345703125 2 636.320657 1270.62676 NaN NaN NaN NaN NaN NaN NaN 63.027 1 62.541 62.041 63.041 -0.48617 0 0 0 0.074759 1 34367 34367 53.317 38.068 1 63491 410 42198 43156 74190 74190 49 0.0022719074001997797 TAWLEIMTKY 10 Oxidation (M) _TAWLEIM(Oxidation (M))TKY_ TAWLEIM(1)TKY TAWLEIM(46)TKY 0 0 1 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3192749023438 2 636.320657 1270.62676 0.27792 0.00017684 -1.409 -0.00089661 -1.1311 -0.00071976 636.8214787399942 62.552 0.35798 62.53 62.359 62.717 -0.021618 46 18 3 0 0 0 0.1028 1 34254 34254 46.022 29.873 1 7199100 63492 410 42198 43156 74191 74191 49 0.0022719074001997797 TAWLEIMTKY 10 Unmodified _TAWLEIMTKY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3224487304688 2 628.323199 1254.63185 0.14138 8.8829E-05 -0.64511 -0.00040534 -0.50374 -0.00031651 628.3229818539431 80.26 0.1145 80.317 80.249 80.364 0.057587 10 6 2 0 0 0 0.2667 1 44374 44374 29.437 21.282 1 25479000 63493 410 42198 43157 74192 74192 0.014714946026515463 TAWLEIMTKY 10 Unmodified _TAWLEIMTKY_ 0 0 0 ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3247680664062 2 628.323199 1254.63185 1.1691 0.00073457 0.21266 0.00013362 1.3818 0.00086819 628.3234870173426 96.655 0.3018 90.479 90.354 90.656 -6.1757 53 17 4 0 0 0 0.04428 2 64014 64014;64137 61.09 47.184 1 167020000 63494 410 42198 43157 74193;74194 74193 0.014714946026515463 TAWLLYDTY 9 Unmodified _TAWLLYDTY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.28076171875 2 573.279315 1144.54408 0.37479 0.00021486 1.9053 0.0010923 2.2801 0.0013071 573.2806596195314 84.109 0.20505 84.109 84.001 84.206 0 12 10 2 0 0 0 0.58865 1 46614 46614 2.0598 0 1 280340 63495 1569 42199 43158 74195 74195 -0.022413829964762044 TAWLLYDTY 9 Unmodified _TAWLLYDTY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2796630859375 2 573.279315 1144.54408 0.66466 0.00038103 -0.58518 -0.00033547 0.079472 4.5559E-05 573.2787804716844 84.575 0.38874 84.075 83.864 84.253 -0.49961 53 17 4 0 0 0 0.087258 2 46322 46226;46322 36.044 26.697 1 5347100 63496 1569 42199 43158 74196;74197 74197 -0.022413829964762044 TAWRTPRAM 9 Unmodified _TAWRTPRAM_ 0 0 0 ENST00000422989.5_1_19:44096586-44096790:-|nuORF ENST00000422989.5_1_19:44096586-44096790:-|nuORF ENST00000422989.5_1_19:44096586-44096790:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8596496582031 3 363.858921 1088.55493 1.8013 0.00065543 0.10273 3.7379E-05 1.9041 0.00069281 363.8589837421945 20.375 0.36185 17.682 17.559 17.921 -2.693 48 19 3 0 0 0 0.41742 1 10905 10905 7.609 1.4171 1 5876800 63497 13123 42200 43159 74198 74198 0.014197408968129821 TAYALQFPF 9 Unmodified _TAYALQFPF_ 0 0 0 ENSG00000177275|ENST00000318244|OR2AJ1 ENSG00000177275|ENST00000318244|OR2AJ1 ENSG00000177275|ENST00000318244|OR2AJ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7874145507812 2 529.271293 1056.52803 3.2672 0.0017292 -4.3194 -0.0022861 -1.0522 -0.0005569 529.770884981113 97.739 0.22169 97.721 97.651 97.873 -0.018188 11 7 2 0 0 0 0.18118 1 54360 54360 12.532 0 1 1012500 63498 8671 42201 43160 74199 74199 0.002029555572789832 TAYDNFVEL 9 Unmodified _TAYDNFVEL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2538452148438 2 536.253297 1070.49204 0.12896 6.9154E-05 0.062426 3.3476E-05 0.19138 0.00010263 536.2532946528702 70.153 0.38815 70.153 70.037 70.425 0 80 29 4 0 0 0 0.022193 2 39142 39041;39142 61.357 15.337 1 26123000 63499 7963 42202 43161 74200;74201 74201 -0.04038546410242816 TAYDNFVEL 9 Unmodified _TAYDNFVEL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2535400390625 2 536.253297 1070.49204 0.38833 0.00020824 0.031576 1.6933E-05 0.41991 0.00022518 536.2534924773894 78.253 0.45875 72.077 71.831 72.289 -6.1757 53 26 3 0 0 0 0.013323 2 51276 51153;51276 71.134 16.36 1 53420000 63500 7963 42202 43161 74202;74203 74203 -0.04038546410242816 TAYFFLPFLC 10 Unmodified _TAYFFLPFLC_ 0 0 0 nc|ENSG00000102539|O43193-2|MLNR;ENSG00000102539|ENST00000218721|MLNR nc|ENSG00000102539|O43193-2|MLNR nc|ENSG00000102539|O43193-2|MLNR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.3040161132812 2 611.304278 1220.594 0.36802 0.00022497 -0.91722 -0.0005607 -0.5492 -0.00033573 611.3037858181026 40.142 0.20692 39.845 39.735 39.942 -0.29716 14 9 2 0 0 0 0.67033 1 21218 21218 6.2058 0.47393 1 1709800 63501 2050 42203 43162 74204 74204 -0.007469715921615716 TAYLDGVSL 9 Unmodified _TAYLDGVSL_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4832153320312 1 938.482939 937.475663 0.30426 0.00028554 -0.34039 -0.00031945 -0.03613 -3.3907E-05 938.4822588576837 66.799 0.29399 66.799 66.637 66.931 0 18 13 2 0 0 0 0.070838 1 37233 37233 39.957 7.6518 1 1368000 63502 7728 42204 43163 74205 74205 0.0044237242368581065 TAYLDGVSL 9 Unmodified _TAYLDGVSL_ 0 0 0 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 ENSG00000168209|ENST00000307365|DDIT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7459106445312 2 469.745108 937.475663 0.6082 0.0002857 1.727 0.00081127 2.3352 0.001097 469.74556806596775 66.785 0.24071 66.785 66.637 66.878 0 12 10 2 0 0 0 0.30562 1 37242 37242 16.942 4.4107 1 1631400 63503 7728 42204 43163 74206 74206 0.0044237242368581065 TAYMIFSILF 10 Unmodified _TAYMIFSILF_ 0 0 0 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3182373046875 2 603.317386 1204.62022 0.024257 1.4635E-05 0.41172 0.0002484 0.43598 0.00026304 603.3169580856098 76.991 0.54849 77.041 76.698 77.246 0.05011 50 21 3 0 0 0 0.1028 1 42425 42425 46.021 2.0391 1 13887000 + 63504 18881 42205 43164 74207 74207 0.026092975792835205 TAYMIFSILF 10 Unmodified _TAYMIFSILF_ 0 0 0 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3182373046875 2 603.317386 1204.62022 0.024257 1.4635E-05 0.41172 0.0002484 0.43598 0.00026304 603.3169580856098 76.991 0.54849 77.041 76.698 77.246 0.05011 50 21 3 0 0 0 0.12485 1 42425 42425 46.021 2.0391 1 13887000 + 63505 18881 42205 43164 74208 74208 0.026092975792835205 TAYNLVHEL 9 Unmodified _TAYNLVHEL_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2774047851562 2 530.277106 1058.53966 0.25978 0.00013775 0.34163 0.00018116 0.60141 0.00031891 530.2772645441986 52.454 0.39352 52.454 52.243 52.636 0 49 17 4 0 0 0 0.020973 2 28972 28972;29082 62.573 18.714 1 35680000 63506 7776;16369 42206 43165 74209;74210 74209 0.012731525806202626 TAYNLVHEL 9 Unmodified _TAYNLVHEL_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2777099609375 2 530.277106 1058.53966 0.89444 0.0004743 0.26476 0.0001404 1.1592 0.0006147 530.2771467212717 58.25 0.52916 52.222 52.01 52.539 -6.0275 51 28 2 0 0 0 0.0032147 3 37247 37247;37382;37510 125.53 60.294 1 71905000 63507 7776;16369 42206 43165 74211;74212;74213 74211 0.012731525806202626 TAYPGQTQY 9 Unmodified _TAYPGQTQY_ 0 0 0 nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF nc|ENSG00000158161|Q99504-4|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7376708984375 2 514.737814 1027.46108 NaN NaN NaN NaN NaN NaN NaN 30.042 1 30.042 29.542 30.542 0 0 0 0 0.12337 1 15592 15592 39.957 11.47 1 63508 6569 42207 43166 74214 74214 -0.05155699724468832 TAYPGQTQY 9 Unmodified _TAYPGQTQY_ 0 0 0 nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3;ENST00000471498.5_1_1:28324859-28384546:-|nuORF nc|ENSG00000158161|Q99504-4|EYA3 nc|ENSG00000158161|Q99504-4|EYA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.738037109375 2 514.737814 1027.46108 0.85422 0.0004397 -0.34203 -0.00017606 0.51218 0.00026364 514.7378201832587 35.087 0.28762 30.992 30.817 31.105 -4.0951 26 16 2 0 0 0 0.044011 1 20275 20275 47.749 25.012 1 4965600 63509 6569 42207 43166 74215 74215 -0.05155699724468832 TAYRGKKR 8 Unmodified _TAYRGKKR_ 0 0 0 ENSG00000264424|ENST00000255381|MYH4;ENSG00000109061|ENST00000226207|MYH1;ENSG00000125414|ENST00000245503|MYH2;nc|ENSG00000125414|Q9UKX2-2|MYH2 ENSG00000264424|ENST00000255381|MYH4 ENSG00000264424|ENST00000255381|MYH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2939453125 2 490.293425 978.572297 0.42954 0.0002106 -0.45251 -0.00022186 -0.022964 -1.1259E-05 490.2932434980829 34.269 0.22816 34.296 34.163 34.391 0.027401 19 10 2 0 0 0 0.80232 1 18041 18041 5.2307 0.90143 1 3805900 63510 10856 42208 43167 74216 74216 0.08215404494137601 TAYRIESE 8 Unmodified _TAYRIESE_ 0 0 0 REV__ENSG00000196475|ENST00000358842|GK2 REV__ENSG00000196475|ENST00000358842|GK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7400817871094 2 484.737814 967.461075 NaN NaN NaN NaN NaN NaN NaN 65.555 1 65.555 65.055 66.055 0 0 0 0 0.94061 1 36565 36565 12.532 1.7076 1 + 63511 23832 42209 43168 74217 74217 -0.023956997244795275 TAYTCSESVF 10 Unmodified _TAYTCSESVF_ 0 0 0 REV__nc|ENSG00000121853|Q92847-2|GHSR REV__nc|ENSG00000121853|Q92847-2|GHSR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.308349609375 2 554.23679 1106.45903 0.54891 0.00030423 -2.9111 -0.0016134 -2.3621 -0.0013092 554.2342760743167 52.721 0.22313 52.721 52.596 52.82 0 19 9 3 0 0 0 0.22327 1 29188 29188 19.257 2.3147 1 1396000 + 63512 19314 42210 43169 74218 74218 -0.08994496524587703 TAYVGSAVM 9 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ TAYVGSAVM(1) TAYVGSAVM(68) 0 0 1 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 914.4254150390625 1 914.428795 913.421518 -0.60312 -0.00055151 -4.0851 -0.0037355 -4.6882 -0.004287 914.4247087657027 29.884 0.22225 29.884 29.793 30.015 0 20 12 2 0 0 0 0.015445 1 15470 15470 68.081 22.06 1 2509500 63513 16138;16139 42211 43170 74219 74219 1797 -0.03865542999540139 TAYVGSAVM 9 Oxidation (M) _TAYVGSAVM(Oxidation (M))_ TAYVGSAVM(1) TAYVGSAVM(96) 0 0 1 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.430419921875 1 914.428795 913.421518 0.19616 0.00017937 0.12611 0.00011532 0.32227 0.00029469 914.4286410762774 35.399 0.28778 31.304 31.192 31.479 -4.0951 27 17 2 0 0 0 0.0082485 3 20475 20475;20580;20605 96.285 41.511 1 6275200 63514 16138;16139 42211 43170 74220;74221;74222 74220 1797 -0.03865542999540139 TAYYNDPAF 9 Unmodified _TAYYNDPAF_ 0 0 0 ENSG00000187118|ENST00000466830|CMC1 ENSG00000187118|ENST00000466830|CMC1 ENSG00000187118|ENST00000466830|CMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2330322265625 2 531.232364 1060.45018 0.75224 0.00039962 0.62048 0.00032962 1.3727 0.00072923 531.232653439729 49.64 0.28975 49.64 49.465 49.754 0 28 12 3 0 0 0 0.047196 1 27293 27293 46.021 31.439 1 13078000 63515 9541 42212 43171 74223 74223 -0.0776310209876101 TAYYNDPAF 9 Unmodified _TAYYNDPAF_ 0 0 0 ENSG00000187118|ENST00000466830|CMC1 ENSG00000187118|ENST00000466830|CMC1 ENSG00000187118|ENST00000466830|CMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2327270507812 2 531.232364 1060.45018 0.91609 0.00048665 0.39658 0.00021068 1.3127 0.00069733 531.2326241213863 57.2 0.2907 51.173 51.022 51.313 -6.0275 20 16 2 0 0 0 0.008678 1 36592 36592 88.904 52.859 1 24192000 63516 9541 42212 43171 74224 74224 -0.0776310209876101 TAYYQYPQ 8 Unmodified _TAYYQYPQ_ 0 0 0 REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.23583984375 2 517.234907 1032.45526 0.48993 0.00025341 1.1659 0.00060305 1.6558 0.00085646 517.2355979915784 67.075 0.31387 67.075 66.912 67.226 0 21 13 2 0 0 0 0.58902 1 37402 37402 26.884 6.4691 1 1919500 + 63517 21671 42213 43172 74225 74225 -0.059667982361588656 TAYYQYPQ 8 Unmodified _TAYYQYPQ_ 0 0 0 REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2803955078125 2 517.234907 1032.45526 0.48993 0.00025341 1.1659 0.00060305 1.6558 0.00085646 517.2355979915784 67.075 0.31387 67.075 66.912 67.226 0 21 13 2 0 0 0 8.7369 1 37336 37336 9.3474 2.0582 1 1919500 + 63518 21671 42213 43172 74226 74226 -0.059667982361588656 TCAFSTKGTHF 11 Unmodified _TCAFSTKGTHF_ 0 0 0 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 REV__nc|ENSG00000197619|Q8N8J6|ZNF615 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5227661132812 3 400.521974 1198.54409 NaN NaN NaN NaN NaN NaN NaN 47.933 1 47.895 47.395 48.395 -0.038643 0 0 0 0.93224 1 25839 25839 2.6312 0 1 + 63519 23948 42214 43173 74227 74227 -0.04723706268123351 TCAPSVSYF 9 Carbamidomethyl (C) _TC(Carbamidomethyl (C))APSVSYF_ TC(1)APSVSYF TC(42)APSVSYF 0 1 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2277221679688 2 516.228768 1030.44298 0.84648 0.00043698 -0.16029 -8.2747E-05 0.68619 0.00035423 516.2284836504618 63.096 0.41504 56.92 56.7 57.115 -6.1757 39 21 2 0 0 0 0.06187 1 40674 40674 42.095 18.946 1 35055000 63520 2702 42215 43174 74228 74228 277 -0.07102157970825829 TCCLMVIWF 9 Unmodified _TCCLMVIWF_ 0 0 0 nc|ENSG00000197847|A6NK97|SLC22A20P nc|ENSG00000197847|A6NK97|SLC22A20P nc|ENSG00000197847|A6NK97|SLC22A20P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2994384765625 2 558.257959 1114.50137 0.39094 0.00021825 3.4583 0.0019306 3.8492 0.0021489 558.2594535773555 72.709 0.18279 72.751 72.64 72.823 0.041725 13 8 2 0 0 0 0.203 1 40015 40015 5.2307 3.1709 1 1256800 63521 16490 42216 43175 74229 74229 -0.051305159215871754 TCCRPSCCRPQ 11 Unmodified _TCCRPSCCRPQ_ 0 0 0 ENSG00000171396|ENST00000390661|KRTAP4-4 ENSG00000171396|ENST00000390661|KRTAP4-4 ENSG00000171396|ENST00000390661|KRTAP4-4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5057678222656 3 418.505055 1252.49334 1.5305 0.00064053 0.43473 0.00018194 1.9653 0.00082247 418.5053753789455 34.158 0.85651 30.173 29.539 30.396 -3.9853 81 47 2 0 0 0 0.6889 1 19701 19701 2.4348 0 1 10240000 63522 8094 42217 43176 74230 74230 -0.12281018180647152 TCDHCQQD 8 Unmodified _TCDHCQQD_ 0 0 0 nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 nc|ENSG00000102935|Q2M1K9-2|ZNF423 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.1597900390625 2 475.160559 948.306565 NaN NaN NaN NaN NaN NaN NaN 82.48 1 82.48 81.98 82.98 0 0 0 0 0.97444 1 45758 45758 0.69038 0 1 63523 2085 42218 43177 74231 74231 -0.1696559547300467 TCEETFLAI 9 Unmodified _TCEETFLAI_ 0 0 0 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7449340820312 2 513.74425 1025.47395 0.23019 0.00011826 0.21678 0.00011137 0.44697 0.00022963 513.7443653755012 79.666 0.37313 79.666 79.446 79.819 0 27 15 2 0 0 0 0.48152 1 44204 44204 8.5933 0.68312 1 699280 63524 6227 42219 43178 74232 74232 -0.03777004656603822 TCEETFLAI 9 Unmodified _TCEETFLAI_ 0 0 0 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 ENSG00000153002|ENST00000282957|CPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7442626953125 2 513.74425 1025.47395 0.2293 0.0001178 0.25372 0.00013035 0.48303 0.00024815 513.7443661752966 80.457 0.28498 80.457 80.335 80.62 0 22 13 2 0 0 0 0.48152 1 44649 44649 8.5933 0.68312 1 512760 63525 6227 42219 43178 74233 74233 -0.03777004656603822 TCFIKILTI 9 Unmodified _TCFIKILTI_ 0 0 0 REV__ENSG00000126010|ENST00000380289|GRPR REV__ENSG00000126010|ENST00000380289|GRPR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3150634765625 2 526.314646 1050.61474 0.091336 4.8072E-05 0.44301 0.00023316 0.53435 0.00028124 526.3149355534563 76.884 0.52133 76.934 76.8 77.321 0.05011 71 21 5 0 0 0 0.05483 1 42423 42423 43.772 1.9328 1 89715000 + 63526 19537 42220 43179 74234 74234 0.09145618787488274 TCFIKILTI 9 Unmodified _TCFIKILTI_ 0 0 0 REV__ENSG00000126010|ENST00000380289|GRPR REV__ENSG00000126010|ENST00000380289|GRPR MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.31494140625 2 526.314646 1050.61474 1.4839 0.00078102 -0.79438 -0.00041809 0.68956 0.00036293 526.3143987014973 98.108 0.42111 91.933 91.8 92.221 -6.1757 90 27 5 0 0 0 0.036857 1 65131 65131 51.63 1.6968 1 670290000 + 63527 19537 42220 43179 74235 74235 0.09145618787488274 TCGESDCC 8 Unmodified _TCGESDCC_ 0 0 0 REV__ENSG00000164512|ENST00000341048|ANKRD55 REV__ENSG00000164512|ENST00000341048|ANKRD55 MSMS AL20221201_MKP_PDAC_01 4 409.1114196777344 2 409.111689 816.208825 NaN NaN NaN NaN NaN NaN NaN 9.0574 1 6.5754 6.0754 7.0754 -2.482 0 0 0 0.97444 1 4568 4568 0 0 1 + 63528 21920 42221 43180 74236 74236 -0.20663120393362533 TCGEWCTYSY 10 Unmodified _TCGEWCTYSY_ 0 0 0 REV__ENST00000456936.3_1_5:114951626-114951839:-|nuORF REV__ENST00000456936.3_1_5:114951626-114951839:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.8607177734375 3 404.816058 1211.42635 -0.70252 -0.00028439 1.877 0.00075983 1.1745 0.00047544 404.8172795172032 48.558 0.26529 48.558 48.47 48.736 0 26 12 3 0 0 0 0.71123 1 26650 26650 0.69767 0.24315 1 2840900 + 63529 27261 42222 43181 74237 74237 -0.17091026919092656 TCGPTWALRA 10 Unmodified _TCGPTWALRA_ 0 0 0 REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.1856994628906 3 359.183293 1074.52805 NaN NaN NaN NaN NaN NaN NaN 95.689 1 89.514 89.014 90.014 -6.1757 0 0 0 0.97302 1 63385 63385 1.7423 0.41263 1 + 63530 29083 42223 43182 74238 74238 -0.0062336771438822325 TCGQNPDIWYY 11 Unmodified _TCGQNPDIWYY_ 0 0 0 REV__ENSG00000164692|ENST00000297268|COL1A2 REV__ENSG00000164692|ENST00000297268|COL1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 680.2869262695312 2 680.287345 1358.56014 -0.55923 -0.00038044 -2.0373 -0.0013859 -2.5965 -0.0017664 680.2856888831602 25.634 0.23057 25.634 25.507 25.737 0 29 10 3 0 0 0 0.71618 1 13136 13136 2.7352 0.23671 1 2159300 + 63531 21941 42224 43183 74239 74239 -0.10480044821861156 TCHHHHIWLC 10 Unmodified _TCHHHHIWLC_ 0 0 0 ENST00000423599.1_1_7:33420197-33420419:+|nuORF ENST00000423599.1_1_7:33420197-33420419:+|nuORF ENST00000423599.1_1_7:33420197-33420419:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.7872314453125 2 643.787127 1285.5597 NaN NaN NaN NaN NaN NaN NaN 14.699 1 14.705 14.205 15.205 0.0057774 0 0 0 1.0061 1 7299 7299 0 0 1 63532 13136 42225 43184 74240 74240 -0.07165698232051909 TCKEVIHVMQ 10 Unmodified _TCKEVIHVMQ_ 0 0 0 REV__ENSG00000186130|ENST00000373659|ZBTB6 REV__ENSG00000186130|ENST00000373659|ZBTB6 MSMS AL20221201_MKP_PDAC_01 4 594.2980346679688 2 594.299201 1186.58385 NaN NaN NaN NaN NaN NaN NaN 102.4 1 96.224 95.724 96.724 -6.1757 0 0 0 0.89532 1 68719 68719 8.1555 0.8663 1 + 63533 23552 42226 43185 74241 74241 -0.0019790258904777147 TCLEYKILL 9 Unmodified _TCLEYKILL_ 0 0 0 ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF ENSG00000116213|ENST00000270708|WRAP73 ENSG00000116213|ENST00000270708|WRAP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.31005859375 2 548.309561 1094.60457 0.12983 7.1187E-05 0.69445 0.00038078 0.82428 0.00045196 548.3099998170243 77.02 0.31277 77.07 76.934 77.246 0.05011 20 12 2 0 0 0 0.07916 1 42513 42513 37.974 0 1 2688200 63534 3207 42227 43186 74242 74242 0.06105011062277299 TCLEYKILL 9 Unmodified _TCLEYKILL_ 0 0 0 ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF ENSG00000116213|ENST00000270708|WRAP73 ENSG00000116213|ENST00000270708|WRAP73 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.309561 1094.60457 -0.76126 -0.00041741 0.67104 0.00036794 -0.090219 -4.9468E-05 548.3098246803372 77.559 0.28848 77.077 76.956 77.244 -0.4826 0.0032265 -1.3906E-05 NaN 37.974 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1970700 63535 3207 42227 43186 0.06105011062277299 TCLEYKILL 9 Unmodified _TCLEYKILL_ 0 0 0 ENSG00000116213|ENST00000270708|WRAP73;ENST00000497940.5_1_1:3549956-3553597:-|nuORF ENSG00000116213|ENST00000270708|WRAP73 ENSG00000116213|ENST00000270708|WRAP73 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.309561 1094.60457 0.12983 7.1187E-05 0.69445 0.00038078 0.82428 0.00045196 548.3099998170243 77.02 0.31277 77.07 76.934 77.246 0.05011 -0.0032265 1.1764E-05 NaN 37.974 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2688200 63536 3207 42227 43186 0.06105011062277299 TCLPLWAIFL 10 Unmodified _TCLPLWAIFL_ 0 0 0 nc|ENSG00000112337|O00624|SLC17A2;nc|ENSG00000112337|O00624-2|SLC17A2;ENSG00000112337|ENST00000377850|SLC17A2 nc|ENSG00000112337|O00624|SLC17A2 nc|ENSG00000112337|O00624|SLC17A2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 392.8734741210938 3 392.887706 1175.64129 1.096 0.00043061 3.5298 0.0013868 4.6258 0.0018174 392.8890601458883 30.266 0.23994 26.769 26.655 26.895 -3.497 18 11 2 0 0 0 0.23195 1 17048 17048 12.873 2.5574 1 16217000 63537 16125 42228 43187 74243 74243 0.060493076788134204 TCMYLYVLK 9 Unmodified _TCMYLYVLK_ 0 0 0 REV__ENSG00000134262|ENST00000369569|AP4B1 REV__ENSG00000134262|ENST00000369569|AP4B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.52880859375 3 378.529301 1132.56607 NaN NaN NaN NaN NaN NaN NaN 15.619 1 15.605 15.105 16.105 -0.014067 0 0 0 0.85798 1 7673 7673 0.23584 0 1 + 63538 19972 42229 43188 74244 74244 0.005093821560649303 TCSFVAPWNSL 11 Unmodified _TCSFVAPWNSL_ 0 0 0 ENSG00000102265|ENST00000218388|TIMP1;ENST00000456754.6_1_X:47444724-47445414:+|nuORF ENSG00000102265|ENST00000218388|TIMP1 ENSG00000102265|ENST00000218388|TIMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8628234863281 3 408.862108 1223.56449 0.56159 0.00022961 0.11344 4.6381E-05 0.67503 0.00027599 408.8620691776378 27.989 0.19204 27.942 27.821 28.013 -0.046408 13 6 3 0 0 0 0.58219 1 14432 14432 6.6235 0 1 6598500 63539 2032 42230 43189 74245 74245 -0.038345356083254956 TCSSDGMGFHC 11 Unmodified _TCSSDGMGFHC_ 0 0 0 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 ENSG00000074181|ENST00000263388|NOTCH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.6959838867188 2 572.696451 1143.37835 NaN NaN NaN NaN NaN NaN NaN 4.8439 1 4.7711 4.2711 5.2711 -0.072869 0 0 0 0.9435 1 2395 2395 0 0 1 63540 1120 42231 43190 74246 74246 -0.187604241107465 TCVEWLHKY 9 Carbamidomethyl (C) _TC(Carbamidomethyl (C))VEWLHKY_ TC(1)VEWLHKY TC(100)VEWLHKY 0 1 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.298583984375 2 618.297516 1234.58048 0.45126 0.00027901 0.075273 4.6541E-05 0.52654 0.00032556 618.2977722538988 46.031 0.3615 41.076 40.894 41.255 -4.9549 38 23 2 0 0 0 0.008513 2 28411 28270;28411 99.755 69.119 1 20719000 63541 10306 42232 43191 74247;74248 74248 931 -0.02742829371436528 TCVEWLHKY 9 Carbamidomethyl (C) _TC(Carbamidomethyl (C))VEWLHKY_ TC(1)VEWLHKY TC(50)VEWLHKY 0 1 0 ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E ENSG00000204592|ENST00000376630|HLA-E MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.5344848632812 3 412.534103 1234.58048 0.83038 0.00034256 0.2412 9.9504E-05 1.0716 0.00044206 412.53427495981595 46.01 0.53746 41.055 40.789 41.327 -4.9549 94 35 3 0 0 0 0.040733 1 28358 28358 49.527 23.507 1 120680000 63542 10306 42232 43191 74249 74249 931 -0.02742829371436528 TCVIWFTFELL 11 Unmodified _TCVIWFTFELL_ 0 0 0 nc|ENSG00000130037|P22460-2|KCNA5;ENSG00000130037|ENST00000252321|KCNA5 nc|ENSG00000130037|P22460-2|KCNA5 nc|ENSG00000130037|P22460-2|KCNA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.9033203125 3 457.905425 1370.69445 0.29093 0.00013322 -3.1415 -0.0014385 -2.8506 -0.0013053 458.2380873983034 24.179 0.21347 21.352 21.196 21.41 -2.8273 18 11 2 0 0 0 0.68427 1 13171 13171 2.6312 0 1 4700700 63543 4174 42233 43192 74250 74250 0.023926406708596915 TCWDGVRNY 9 Carbamidomethyl (C) _TC(Carbamidomethyl (C))WDGVRNY_ TC(1)WDGVRNY TC(60)WDGVRNY 0 1 0 nc|ENSG00000151500|Q9P016-2|THYN1;ENST00000533975.1_1_11:134119036-134122923:-|nuORF;ENSG00000151500|ENST00000341541|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 nc|ENSG00000151500|Q9P016-2|THYN1 MSMS AL20221201_MKP_PDAC_01 4 585.7537231445312 2 585.753472 1169.49239 NaN NaN NaN NaN NaN NaN NaN 41.506 1 36.898 36.398 37.398 -4.6079 0 0 0 0.044471 1 24935 24935 60.074 33.19 1 63544 6121 42234 43193 74251 74251 610 -0.08557449962040664 TCWDYWTY 8 Unmodified _TCWDYWTY_ 0 0 0 ENST00000568175.1_3_16:29630108-29634155:-|nuORF;ENSG00000174990|ENST00000649794|CA5A ENST00000568175.1_3_16:29630108-29634155:-|nuORF ENST00000568175.1_3_16:29630108-29634155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8161315917969 3 379.816387 1136.42733 0.63233 0.00024017 -0.87604 -0.00033273 -0.24371 -9.2564E-05 379.81607800961604 46.284 0.35855 46.284 46.164 46.523 0 28 16 2 0 0 0 0.80676 1 25271 25271 1.6526 0.58116 1 2039100 63545 8476 42235 43194 74252 74252 -0.1354244448789359 TCWRCCCCC 9 Unmodified _TCWRCCCCC_ 0 0 0 REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF REV__ENST00000519715.1_1_5:140012405-140013200:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.7722778320312 3 360.771868 1079.29377 NaN NaN NaN NaN NaN NaN NaN 88.075 1 88.128 87.628 88.628 0.053352 0 0 0 0.8622 1 48993 48993 0 0 1 + 63546 28265 42236 43195 74253 74253 -0.24270112724389037 TDAHGPDT 8 Unmodified _TDAHGPDT_ 0 0 0 REV__ENSG00000138771|ENST00000296043|SHROOM3 REV__ENSG00000138771|ENST00000296043|SHROOM3 MSMS AL20221201_MKP_PDAC_01 4 406.876708984375 2 407.172307 812.330061 NaN NaN NaN NaN NaN NaN NaN 43.639 1 38.874 38.374 39.374 -4.7648 0 0 0 0.94061 1 26530 26530 12.532 3.1841 1 + 63547 20365 42237 43196 74254 74254 -0.08361090372522995 TDALSLLVF 9 Unmodified _TDALSLLVF_ 0 0 0 REV__nc|ENSG00000125505|Q96N66-2|MBOAT7 REV__nc|ENSG00000125505|Q96N66-2|MBOAT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7787170410156 2 489.778951 977.543348 NaN NaN NaN NaN NaN NaN NaN 78.406 1 77.92 77.42 78.42 -0.48596 0 0 0 0.33856 1 42943 42943 23.148 5.0134 1 + 63548 19498 42238 43197 74255 74255 0.053678223544807224 TDAVALRVR 9 Unmodified _TDAVALRVR_ 0 0 0 ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000442885.2_1_11:65655295-65655958:-|nuORF;ENST00000528937.1_1_11:65654989-65655958:-|nuORF;ENST00000532679.5_1_11:65653270-65655931:-|nuORF ENSG00000172500|ENST00000357519|FIBP ENSG00000172500|ENST00000357519|FIBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.7976684570312 2 500.79854 999.582528 NaN NaN NaN NaN NaN NaN NaN 10.897 1 10.912 10.412 11.412 0.015327 0 0 0 0.85798 1 5380 5380 0.52476 0 1 63549 8227 42239 43198 74256 74256 0.08271967428697735 TDCCTINKK 9 Unmodified _TDCCTINKK_ 0 0 0 REV__ENSG00000167653|ENST00000301258|PSCA REV__ENSG00000167653|ENST00000301258|PSCA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.788330078125 2 513.241352 1024.46815 0.96975 0.00049772 -1.4993 -0.0007695 -0.52955 -0.00027179 513.2398463741657 101.24 0.10207 95.066 95.004 95.107 -6.1757 11 6 2 0 0 0 0.16785 1 67850 67850 16.942 2.3606 1 20050000 + 63550 22235 42240 43199 74257 74257 -0.043104264399289605 TDDALKYL 8 Unmodified _TDDALKYL_ 0 0 0 REV__ENST00000460734.5_1_21:46536910-46540732:+|nuORF REV__ENST00000460734.5_1_21:46536910-46540732:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7445068359375 2 469.745108 937.475663 0.3145 0.00014773 -1.0028 -0.00047105 -0.68829 -0.00032332 469.7448412277665 42.116 0.26799 42.116 41.992 42.26 0 21 13 2 0 0 0 0.3408 1 22773 22773 50.855 6.448 1 6503000 + 63551 27301 42241 43200 74258 74258 0.004423724236630733 TDDDYGRLAL 10 Unmodified _TDDDYGRLAL_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.774169921875 2 569.772385 1137.53022 0.6401 0.00036471 2.4967 0.0014226 3.1369 0.0017873 569.7740658847842 52.559 0.17284 52.125 52.044 52.216 -0.43367 15 8 2 0 0 0 0.40136 1 28407 28407 21.537 8.4945 1 1648000 63552 8348 42242 43201 74259 74259 -0.03304660495564349 TDDFELIRL 9 Unmodified _TDDFELIRL_ 0 0 0 REV__ENST00000482071.1_1_3:136664576-136665812:+|nuORF REV__ENST00000482071.1_1_3:136664576-136665812:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7702026367188 2 561.295496 1120.57644 0.32159 0.00018051 -0.47609 -0.00026723 -0.1545 -8.6718E-05 561.295902993118 62.703 0.2129 62.703 62.633 62.846 0 11 8 2 0 0 0 0.18118 1 34964 34964 18.135 0 1 378000 + 63553 27714 42243 43202 74260 74260 0.02097404406526948 TDDNRVWNVV 10 Unmodified _TDDNRVWNVV_ 0 0 0 ENST00000367651.3_1_6:139693526-139693751:-|nuORF ENST00000367651.3_1_6:139693526-139693751:-|nuORF ENST00000367651.3_1_6:139693526-139693751:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.8699645996094 3 406.53516 1216.58365 NaN NaN NaN NaN NaN NaN NaN 17.345 1 14.758 14.258 15.258 -2.5866 0 0 0 0.97592 1 9061 9061 1.5923 0 1 63554 12248 42244 43203 74261 74261 -0.015978629930714305 TDDPDDYGDRE 11 Unmodified _TDDPDDYGDRE_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.2443237304688 2 649.244386 1296.47422 NaN NaN NaN NaN NaN NaN NaN 44.528 1 44.506 44.006 45.006 -0.022064 0 0 0 0.9435 1 23894 23894 0 0 1 63555 486 42245 43204 74262 74262 -0.16215958193720326 TDDVKICI 8 Unmodified _TDDVKICI_ 0 0 0 ENST00000309964.8_1_4:56300945-56301062:-|nuORF ENST00000309964.8_1_4:56300945-56301062:-|nuORF ENST00000309964.8_1_4:56300945-56301062:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7351379394531 2 453.733686 905.452819 NaN NaN NaN NaN NaN NaN NaN 45.771 1 45.771 45.271 46.271 0 0 0 0 0.7268 1 24971 24971 26.884 3.7352 1 63556 11669 42246 43205 74263 74263 -0.003689699654614742 TDEDEEAEMS 10 Unmodified _TDEDEEAEMS_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.8044738769531 3 385.804653 1154.39213 0.22462 8.6658E-05 -2.2365 -0.00086284 -2.0118 -0.00077618 385.8040789887415 66.501 0.35435 66.501 66.304 66.658 0 22 15 2 0 0 0 0.69626 1 37093 37093 3.3196 1.4133 1 2568600 63557 3172 42247 43206 74264 74264 -0.1788919659700241 TDELLHVY 8 Unmodified _TDELLHVY_ 0 0 0 ENST00000543302.6_1_18:13760016-13760190:+|nuORF ENST00000543302.6_1_18:13760016-13760190:+|nuORF ENST00000543302.6_1_18:13760016-13760190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.2507629394531 2 495.250557 988.486562 -0.10755 -5.3266E-05 -2.2164 -0.0010977 -2.324 -0.001151 495.2494859840617 53.553 0.21439 53.49 53.361 53.576 -0.063423 25 11 3 0 0 0 0.78849 1 29034 29034 9.3474 2.0582 1 19598000 63558 15070 42248 43207 74265 74265 -0.00814225202043417 TDENSVNV 8 Unmodified _TDENSVNV_ 0 0 0 REV__ENSG00000163075|ENST00000413369|CFAP221 REV__ENSG00000163075|ENST00000413369|CFAP221 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.1980895996094 2 439.198522 876.38249 NaN NaN NaN NaN NaN NaN NaN 51.65 1 51.65 51.15 52.15 0 0 0 0 0.93587 1 28537 28537 13.508 0 1 + 63559 21722 42249 43208 74266 74266 -0.0606455202955658 TDFFLDHQL 9 Unmodified _TDFFLDHQL_ 0 0 0 REV__ENSG00000178445|ENST00000321612|GLDC REV__ENSG00000178445|ENST00000321612|GLDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.72802734375 2 568.274564 1134.53457 1.01 0.00057395 0.8121 0.0004615 1.8221 0.0010354 568.2751025314711 80.804 0.65476 80.311 79.906 80.561 -0.49247 57 27 3 0 0 0 0.18882 1 44281 44281 15.847 5.7733 1 1901100 + 63560 23046 42250 43209 74267 74267 -0.027311512819778727 TDFKKLYE 8 Unmodified _TDFKKLYE_ 0 0 0 nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A;nc|ENSG00000058272|O14974-5|PPP1R12A;ENST00000550903.5_1_12:80169711-80183436:-|nuORF nc|ENSG00000058272|O14974-4|PPP1R12A nc|ENSG00000058272|O14974-4|PPP1R12A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.256103515625 2 522.274032 1042.53351 0.38353 0.00020031 -0.36932 -0.00019288 0.014212 7.4224E-06 522.7739706993519 68.4 0.16534 67.919 67.825 67.99 -0.48071 10 6 2 0 0 0 8.7369 1 37355 37355 9.3474 0.75416 1 1020100 63561 802 42251 43210 74268 74268 0.013946343490943036 TDFLEETLK 9 Unmodified _TDFLEETLK_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7437133789062 2 548.282054 1094.54956 0.69399 0.0003805 0.51128 0.00028032 1.2053 0.00066083 548.2822547646593 60.129 0.25627 60.129 60.023 60.279 0 23 10 3 0 0 0 0.18882 1 33573 33573 10.824 5.0921 1 2210500 63562 10222 42252 43211 74269 74269 0.006062957953417936 TDFPALREVVD 11 Unmodified _TDFPALREVVD_ 0 0 0 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 ENSG00000178567|ENST00000322716|EPM2AIP1 MSMS AL20221201_MKP_PDAC_01 4 421.220458984375 3 421.218949 1260.63502 NaN NaN NaN NaN NaN NaN NaN 78.192 1 72.016 71.516 72.516 -6.1757 0 0 0 0.74213 1 51170 51170 14.838 2.6103 1 63563 8759 42253 43212 74270 74270 0.015124609809845424 TDFRESELI 9 Unmodified _TDFRESELI_ 0 0 0 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 REV__nc|ENSG00000135048|Q9UHN6-2|CEMIP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2322387695312 2 555.277303 1108.54005 -0.30083 -0.00016705 -2.431 -0.0013499 -2.7319 -0.0015169 555.2773294929157 27.69 0.14466 27.69 27.638 27.783 0 9 6 2 0 0 0 0.17718 1 14276 14276 10.074 2.7847 1 875500 + 63564 20032 42254 43213 74271 74271 -0.009874724901692389 TDFTVTLIS 9 Unmodified _TDFTVTLIS_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.531494140625 1 996.524804 995.517527 -0.027948 -2.7851E-05 -0.2728 -0.00027185 -0.30075 -0.0002997 996.5244725766888 63.327 0.49084 63.327 63.122 63.612 0 66 24 4 0 0 0 0.41742 1 35453 35453 11.64 4.3511 1 26008000 + 63565 29667 42255 43214 74272 74272 0.01958928112196645 TDGEREDSERF 11 Unmodified _TDGEREDSERF_ 0 0 0 ENSG00000154114|ENST00000683345|TBCEL ENSG00000154114|ENST00000683345|TBCEL ENSG00000154114|ENST00000683345|TBCEL MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5302429199219 3 447.528622 1339.56404 1.4079 0.00063007 3.3397 0.0014946 4.7476 0.0021247 447.864673486482 97.79 0.12399 91.614 91.577 91.701 -6.1757 15 8 2 0 0 0 0.61059 1 64817 64817 5.8681 1.7515 1 16800000 63566 6296 42256 43215 74273 74273 -0.09216283794489755 TDHELQEWYK 10 Unmodified _TDHELQEWYK_ 0 0 0 ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 ENSG00000115756|ENST00000307845|HPCAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.7058715820312 3 450.210453 1347.60953 -0.20021 -9.0134E-05 -0.58846 -0.00026493 -0.78866 -0.00035506 450.209937817712 18.511 0.2915 18.511 18.447 18.739 0 39 30 2 0 0 0 0.23993 1 9249 9249 1.7423 0 1 1946900 63567 3158 42257 43216 74274 74274 -0.05037013541436863 TDHHMFFDY 9 Unmodified _TDHHMFFDY_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7423706054688 2 606.742573 1211.47059 0.72617 0.0004406 -0.65172 -0.00039542 0.074452 4.5173E-05 606.7421972688081 75.323 0.28387 74.846 74.696 74.98 -0.47714 21 15 2 0 0 0 0.58865 1 41216 41216 2.0598 0.40713 1 1884100 63568 2685 42258 43217 74275 74275 -0.12668254710570181 TDKGTENEVEV 11 Unmodified _TDKGTENEVEV_ 0 0 0 REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.78466796875 2 610.785689 1219.55683 0.14621 8.9305E-05 -1.4217 -0.00086838 -1.2755 -0.00077908 610.7847517223263 89.236 0.27924 89.236 89.063 89.342 0 27 12 3 0 0 0 0.70069 1 49402 49402 4.1895 0 1 881710 + 63569 24314 42259 43218 74276 74276 -0.04417016394904749 TDKPEAASPFG 11 Unmodified _TDKPEAASPFG_ 0 0 0 ENSG00000169087|ENST00000306103|HSPBAP1 ENSG00000169087|ENST00000306103|HSPBAP1 ENSG00000169087|ENST00000306103|HSPBAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.269775390625 2 560.269478 1118.5244 -0.32479 -0.00018197 0.88813 0.00049759 0.56334 0.00031562 560.771534025902 55.789 0.20258 55.789 55.69 55.892 0 48 19 3 0 0 0 0.59689 1 31024 31024 11.495 1.4208 1 13704000 63570 7833 42260 43219 74277 74277 -0.030117590072450184 TDKQEAYVL 9 Unmodified _TDKQEAYVL_ 0 0 0 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 ENSG00000123505|ENST00000368885|AMD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.553955078125 2 533.774396 1065.53424 0.4749 0.00025349 -2.8724 -0.0015332 -2.3975 -0.0012797 533.7732306910194 30.526 0.1864 30.423 30.337 30.523 -0.10269 9 6 2 0 0 0 0.16785 1 15882 15882 11.64 1.5664 1 789930 63571 3715 42261 43220 74278 74278 0.004094289981367183 TDLSLSLFL 9 Unmodified _TDLSLSLFL_ 0 0 0 ENST00000282272.14_1_2:197852623-197852740:-|nuORF ENST00000282272.14_1_2:197852623-197852740:-|nuORF ENST00000282272.14_1_2:197852623-197852740:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.7852478027344 2 504.784233 1007.55391 NaN NaN NaN NaN NaN NaN NaN 101.22 1 95.048 94.548 95.548 -6.1757 0 0 0 0.043758 1 67881 67881 60.39 0 1 63572 11419 42262 43221 74279 74279 0.05043805008892832 TDLTKFFRF 9 Unmodified _TDLTKFFRF_ 0 0 0 REV__ENST00000530567.1_1_11:64977449-64978754:+|nuORF REV__ENST00000530567.1_1_11:64977449-64978754:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2134399414062 3 392.213358 1173.61824 0.21547 8.4509E-05 0.40298 0.00015806 0.61845 0.00024257 392.2135116795319 39.76 0.39283 39.765 39.543 39.936 0.0050545 45 18 3 0 0 0 0.58865 1 21220 21220 1.0715 0 1 2292100 + 63573 17080 42263 43222 74280 74280 0.038380048857106885 TDLYIMSFL 9 Unmodified _TDLYIMSFL_ 0 0 0 ENST00000539966.5_1_13:99104953-99105142:-|nuORF ENST00000539966.5_1_13:99104953-99105142:-|nuORF ENST00000539966.5_1_13:99104953-99105142:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7760009765625 2 551.778093 1101.54163 NaN NaN NaN NaN NaN NaN NaN 85.182 1 84.68 84.18 85.18 -0.5015 0 0 0 0.46757 1 46608 46608 16.942 3.4344 1 63574 15027 42264 43223 74281 74281 -0.005075547257774815 TDMLKQDSF 9 Unmodified _TDMLKQDSF_ 0 0 0 nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2 nc|ENSG00000078018|P11137-3|MAP2 nc|ENSG00000078018|P11137-3|MAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.75341796875 2 542.752607 1083.49066 -0.21359 -0.00011593 1.0547 0.00057246 0.84114 0.00045653 542.7531649410489 45.025 0.22579 45.025 44.925 45.15 0 16 11 2 0 0 0 0.41742 1 24542 24542 11.64 0.81637 1 4548800 63575 1231 42265 43224 74282 74282 -0.04774503770636329 TDMSPPVQYI 10 Unmodified _TDMSPPVQYI_ 0 0 0 REV__nc|ENSG00000050820|P56945-5|BCAR1 REV__nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7749633789062 2 575.776082 1149.53761 0.9965 0.00057376 1.7573 0.0010118 2.7538 0.0015856 575.7778351634627 59.879 1.0119 53.764 53.433 54.445 -6.1147 95 54 3 0 0 0 0.44373 3 38452 38452;38594;38648 19.257 5.7491 1 109710000 + 63576 17263 42266 43225 74283;74284;74285 74283 -0.031176442194691845 TDMSTIPP 8 Unmodified _TDMSTIPP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MSMS AL20221201_MKP_PDAC_01 4 431.2078857421875 2 431.204761 860.394969 NaN NaN NaN NaN NaN NaN NaN 78.874 1 72.699 72.199 73.199 -6.1757 0 0 0 0.95607 1 51660 51660 9.3474 0 1 63577 5089 42267 43226 74286 74286 -0.040812318908592715 TDNIALLK 8 Unmodified _TDNIALLK_ 0 0 0 ENSG00000082212|ENST00000321341|ME2;nc|ENSG00000082212|P23368-2|ME2 ENSG00000082212|ENST00000321341|ME2 ENSG00000082212|ENST00000321341|ME2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2648010253906 2 444.263468 886.512382 1.7115 0.00076037 1.3601 0.00060424 3.0716 0.0013646 444.2640392749942 106.41 0.37157 100.23 99.914 100.29 -6.1757 73 53 2 0 0 0 0.80992 1 71185 71185 0.69038 0 1 3348200 63578 1341 42268 43227 74287 74287 0.06458669040250697 TDNYTHDVFM 10 Unmodified _TDNYTHDVFM_ 0 0 0 ENST00000426563.5_1_3:196018200-196044977:-|nuORF;ENSG00000213123|ENST00000325318|DYNLT2B ENST00000426563.5_1_3:196018200-196044977:-|nuORF ENST00000426563.5_1_3:196018200-196044977:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 414.8411560058594 3 414.841372 1241.50229 NaN NaN NaN NaN NaN NaN NaN 0.30517 1 -2.1768 -2.6768 -1.6768 -2.482 0 0 0 1.0019 1 162 162 0.15932 0.064481 1 63579 10422 42269 43228 74288 74288 -0.1088030674732181 TDPAGWLS 8 Unmodified _TDPAGWLS_ 0 0 0 REV__ENST00000418351.1_1_15:44282253-44282364:-|nuORF REV__ENST00000418351.1_1_15:44282253-44282364:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.402099609375 1 846.399209 845.391933 0.08651 7.3222E-05 1.0262 0.00086858 1.1127 0.00094181 846.4001386062815 75.264 0.21273 75.264 75.157 75.369 0 17 10 2 0 0 0 0.80232 1 41858 41858 5.2307 0 1 522370 + 63580 26802 42270 43229 74289 74289 -0.0369473895336796 TDPAPVADY 9 Unmodified _TDPAPVADY_ 0 0 0 ENST00000564507.5_1_16:1551718-1556512:+|nuORF;ENSG00000100726|ENST00000262319|TELO2 ENST00000564507.5_1_16:1551718-1556512:+|nuORF ENST00000564507.5_1_16:1551718-1556512:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.2189636230469 2 474.71909 947.423627 1.0582 0.00050234 -0.33679 -0.00015988 0.7214 0.00034246 474.71933903701375 37.99 0.28065 33.621 33.437 33.718 -4.3689 25 16 2 0 0 0 0.19891 1 22399 22399 11.64 4.9171 1 11260000 63581 1868 42271 43230 74290 74290 -0.05218790990102207 TDPTGKNIYLH 11 Unmodified _TDPTGKNIYLH_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8245239257812 2 629.824952 1257.63535 0.332 0.0002091 -1.2448 -0.00078403 -0.91284 -0.00057493 629.8243931854032 69.844 0.446 69.875 69.664 70.11 0.030914 75 22 5 0 0 0 0.31498 2 38474 38356;38474 32.786 10.815 1 81485000 63582 4818 42272 43231 74291;74292 74292 0.016838807008298318 TDPVTLNV 8 Unmodified _TDPVTLNV_ 0 0 0 ENSG00000168301|ENST00000404589|KCTD6 ENSG00000168301|ENST00000404589|KCTD6 ENSG00000168301|ENST00000404589|KCTD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4600830078125 1 858.456724 857.449448 0.16606 0.00014255 0.53415 0.00045855 0.70021 0.0006011 858.4572212142778 75.307 0.36572 75.307 75.111 75.476 0 30 20 2 0 0 0 0.80722 1 41805 41805 2.3027 0 1 1132400 63583 7746 42273 43232 74293 74293 0.015021032522099631 TDPYLTNSY 9 Unmodified _TDPYLTNSY_ 0 0 0 nc|ENSG00000182022|Q7LFX5-2|CHST15;ENSG00000182022|ENST00000435907|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 nc|ENSG00000182022|Q7LFX5-2|CHST15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.24365234375 2 537.242929 1072.47131 -0.40499 -0.00021758 -0.023167 -1.2446E-05 -0.42815 -0.00023002 537.2429816920697 34.642 0.44367 34.642 34.384 34.827 0 48 22 3 0 0 0 0.41742 1 18204 18204 11.64 0.81637 1 2278100 63584 9010 42274 43233 74294 74294 -0.06203136789918062 TDQCQFCQH 9 Unmodified _TDQCQFCQH_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.4770812988281 3 370.476148 1108.40661 0.80821 0.00029942 2.2015 0.00081559 3.0097 0.001115 370.4768368322512 54.494 0.28931 54.494 54.352 54.641 0 24 12 2 0 0 0 0.54444 1 30249 30249 2.7352 1.6637 1 3757600 + 63585 18899 42275 43234 74295 74295 -0.1432535813917184 TDQCQFCQH 9 Unmodified _TDQCQFCQH_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 370.476148 1108.40661 0.80821 0.00029942 2.2015 0.00081559 3.0097 0.001115 370.4768368322512 54.494 0.28931 54.494 54.352 54.641 0 -0.052366 -0.00037419 NaN 2.7352 24 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3757600 + 63586 18899 42275 43234 -0.1432535813917184 TDQCQFCQH 9 Unmodified _TDQCQFCQH_ 0 0 0 REV__ENSG00000113971|ENST00000337331|NPHP3 REV__ENSG00000113971|ENST00000337331|NPHP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 370.476148 1108.40661 0.26114 9.6746E-05 4.5005 0.0016673 4.7617 0.0017641 370.47721186717774 55.077 0.18489 54.599 54.548 54.733 -0.47798 0.052366 0.0021811 NaN 2.7352 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 766730 + 63587 18899 42275 43234 -0.1432535813917184 TDQIRLFR 8 Unmodified _TDQIRLFR_ 0 0 0 REV__nc|ENSG00000140284|O14975-2|SLC27A2 REV__nc|ENSG00000140284|O14975-2|SLC27A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2588500976562 2 524.79854 1047.58253 -0.10507 -5.5139E-05 -0.25776 -0.00013527 -0.36282 -0.00019041 524.7988633469196 32.033 0.26959 31.904 31.745 32.015 -0.12915 24 10 3 0 0 0 8.7369 1 16685 16685 16.942 0 1 6438300 + 63588 20457 42276 43235 74296 74296 0.06063967428713113 TDQKEPLHQ 9 Unmodified _TDQKEPLHQ_ 0 0 0 REV__nc|ENSG00000197969|Q96RL7-4|VPS13A REV__nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7972412109375 2 548.275095 1094.53564 0.86794 0.00047587 -1.1954 -0.00065539 -0.32743 -0.00017952 548.2740845955318 52.584 0.3342 46.85 46.726 47.06 -5.7345 30 18 2 0 0 0 0.17275 1 33289 33289 10.824 7.5426 1 53296000 + 63589 23975 42277 43236 74297 74297 -0.00784936913078127 TDQKTARATR 10 Unmodified _TDQKTARATR_ 0 0 0 REV__AluJr_dup84017|chr22:24220470-24220746:+|1.123637248190109|0.3639411179145401|1.63|179.0|2|1|sense REV__AluJr_dup84017|chr22:24220470-24220746:+|1.123637248190109|0.3639411179145401|1.63|179.0|2|1|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3114013671875 2 574.312543 1146.61053 NaN NaN NaN NaN NaN NaN NaN 18.266 1 18.272 17.772 18.772 0.0060463 0 0 0 0.97302 1 9250 9250 3.5965 0.31518 1 + 63590 16711 42278 43237 74298 74298 0.04309245618128443 TDRDLQEI 8 Unmodified _TDRDLQEI_ 0 0 0 ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000085788|ENST00000397166|DDHD2 ENSG00000085788|ENST00000397166|DDHD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7718200683594 2 495.248546 988.482539 -0.36452 -0.00018053 3.2413 0.0016053 2.8768 0.0014247 495.25007955346774 35.147 0.19199 35.147 34.998 35.19 0 13 9 2 0 0 0 8.7369 1 18556 18556 11.64 0 1 1492200 63591 1418 42279 43238 74299 74299 -0.012163146957732351 TDRESYSL 8 Unmodified _TDRESYSL_ 0 0 0 ENSG00000153107|ENST00000341068|ANAPC1;ENST00000485325.1_1_2:112560984-112579093:-|nuORF;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF ENSG00000153107|ENST00000341068|ANAPC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.728759765625 2 485.727446 969.44034 NaN NaN NaN NaN NaN NaN NaN 56.434 1 56.434 55.934 56.934 0 0 0 0 0.97348 1 31388 31388 5.7604 0 1 63592 6239;13571 42280 43239 74300 74300 -0.04560290104143405 TDRPWYEIWT 10 Unmodified _TDRPWYEIWT_ 0 0 0 REV__ENSG00000106804|ENST00000223642|C5 REV__ENSG00000106804|ENST00000223642|C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.8271484375 2 683.824952 1365.63535 -0.13211 -9.0341E-05 1.857 0.0012698 1.7248 0.0011795 683.8262396692933 40.217 0.85699 40.217 39.575 40.432 0 71 42 3 0 0 0 0.63399 1 21534 21534 9.3831 1.7742 1 3922700 + 63593 18538 42281 43240 74301 74301 -0.032841192991554635 TDRQEALL 8 Unmodified _TDRQEALL_ 0 0 0 REV__ENSG00000166963|ENST00000300231|MAP1A REV__ENSG00000166963|ENST00000300231|MAP1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 473.7191772460938 2 473.253631 944.49271 0.3563 0.00016862 -0.94423 -0.00044686 -0.58793 -0.00027824 473.25381172144444 38.571 0.40099 34.202 33.932 34.333 -4.3689 32 25 2 0 0 0 8.7369 1 22655 22655 13.906 0.86358 1 13913000 + 63594 22169 42282 43241 74302 74302 0.018242930294718462 TDRQSPTVI 9 Unmodified _TDRQSPTVI_ 0 0 0 REV__ENSG00000100889|ENST00000216780|PCK2 REV__ENSG00000100889|ENST00000216780|PCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7730712890625 2 508.772188 1015.52982 0.5373 0.00027337 2.1765 0.0011073 2.7138 0.0013807 508.7720277087358 28.463 0.45671 25.315 25.077 25.534 -3.1482 52 23 3 0 0 0 0.094149 1 15838 15838 34.402 2.0962 1 7987100 + 63595 18113 42283 43242 74303 74303 0.022679645752418764 TDSALITL 8 Unmodified _TDSALITL_ 0 0 0 nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79;nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 nc|ENSG00000133958|Q9P2D8-3|UNC79 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4686889648438 1 833.461475 832.454199 -0.36531 -0.00030447 0.59296 0.00049421 0.22765 0.00018974 833.4618747878488 51.988 0.39967 51.988 51.753 52.152 0 54 17 4 0 0 0 0.80722 1 28725 28725 2.3027 0 1 51487000 63596 4543 42284 43243 74304 74304 0.031269873949554494 TDSDRETTTQS 11 Unmodified _TDSDRETTTQS_ 0 0 0 REV__nc|ENSG00000137337|Q14676-4|MDC1 REV__nc|ENSG00000137337|Q14676-4|MDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.7680053710938 2 620.768028 1239.5215 NaN NaN NaN NaN NaN NaN NaN 2.9852 1 2.9729 2.4729 3.4729 -0.012334 0 0 0 0.9435 1 1514 1514 0 0 1 + 63597 20234 42285 43244 74305 74305 -0.08867678922706546 TDSSQGIPQL 10 Unmodified _TDSSQGIPQL_ 0 0 0 ENSG00000135624|ENST00000258091|CCT7;ENST00000480489.5_1_2:73461506-73470269:+|nuORF;ENST00000461290.5_1_2:73461506-73471178:+|nuORF;ENST00000464397.1_1_2:73461506-73466971:+|nuORF ENSG00000135624|ENST00000258091|CCT7 ENSG00000135624|ENST00000258091|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2615966796875 2 523.261653 1044.50875 0.64251 0.0003362 0.83347 0.00043612 1.476 0.00077233 523.2616545717802 78.249 0.94713 72.074 71.409 72.356 -6.1757 76 54 2 0 0 0 0.10424 1 51186 51186 45.7 1.2926 1 32285000 63598 4726 42286 43245 74306 74306 -0.011720455242766548 TDSSVLVI 8 Unmodified _TDSSVLVI_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.4613647460938 1 833.461475 832.454199 -0.36531 -0.00030447 0.59296 0.00049421 0.22765 0.00018974 833.4618747878488 51.988 0.39967 51.988 51.753 52.152 0 54 17 4 0 0 0 0.18881 1 28775 28775 74.396 0 1 51487000 + 63599 23079 42287 43246 74307 74307 0.031269873949554494 TDSSVLVI 8 Unmodified _TDSSVLVI_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 833.459716796875 1 833.461475 832.454199 0.98362 0.00081981 -0.17176 -0.00014316 0.81186 0.00067666 833.4612397037514 59.915 0.45989 53.8 53.604 54.064 -6.1147 46 25 2 0 0 0 0.18881 2 38421 38421;38562 74.396 0 1 94500000 + 63600 23079 42287 43246 74308;74309 74308 0.031269873949554494 TDVDPKTVHKK 11 Unmodified _TDVDPKTVHKK_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.3548583984375 2 634.353877 1266.6932 -0.083635 -5.3054E-05 0.86307 0.00054749 0.77944 0.00049444 634.3544872356294 30.275 0.25539 30.305 30.137 30.393 0.030104 25 10 3 0 0 0 0.6889 1 15790 15790 5.2969 2.5617 1 1769800 63601 4107 42288 43247 74310 74310 0.07052142626275781 TDVLYHLDTL 10 Unmodified _TDVLYHLDTL_ 0 0 0 REV__ENST00000609075.5_1_2:70310793-70312954:-|nuORF REV__ENST00000609075.5_1_2:70310793-70312954:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8730163574219 3 397.208161 1188.60265 -0.19673 -7.8142E-05 0.75732 0.00030081 0.56059 0.00022267 397.20834508321815 37.766 0.32942 37.783 37.634 37.963 0.01704 40 15 4 0 0 0 0.23896 1 20132 20132 1.7423 0.14999 1 16487000 + 63602 29328 42289 43248 74311 74311 0.01589673577996109 TDVSWRLEY 9 Unmodified _TDVSWRLEY_ 0 0 0 ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000468179.6_1_10:22607528-22607663:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF ENST00000602395.1_1_10:22607528-22615407:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7846069335938 2 584.785296 1167.55604 NaN NaN NaN NaN NaN NaN NaN 36.257 1 36.257 35.757 36.757 0 0 0 0 0.6557 1 19220 19220 10.824 0 1 63603 5934 42290 43249 74312 74312 -0.021037662532762624 TDVWETVKL 9 Unmodified _TDVWETVKL_ 0 0 0 REV__ENST00000455650.1_1_10:45568854-45568968:-|nuORF REV__ENST00000455650.1_1_10:45568854-45568968:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7603149414062 2 545.792589 1089.57063 0.52474 0.0002864 0.60015 0.00032756 1.1249 0.00061396 545.7927276268102 74.289 0.38191 73.813 73.593 73.974 -0.47588 23 15 2 0 0 0 0.20727 1 40598 40598 7.9102 3.1541 1 2013600 + 63604 27245 42291 43250 74313 74313 0.029423058948623293 TDWNNMSKF 9 Unmodified _TDWNNMSKF_ 0 0 0 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.2401123046875 3 381.502691 1141.48624 0.89585 0.00034177 1.1209 0.00042764 2.0168 0.00076941 381.5031291084184 17.496 0.30267 14.909 14.775 15.077 -2.5866 104 59 2 0 0 0 0.21834 1 9256 9256 0.96228 0.0979 1 7741300 63605 4961 42292 43251 74314 74314 -0.07883968193550572 TDWQEWNSTL 10 Unmodified _TDWQEWNSTL_ 0 0 0 REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.2830810546875 2 640.283117 1278.55168 0.63315 0.00040539 -0.49712 -0.0003183 0.13602 8.7094E-05 640.2832804877534 64.981 0.31782 64.981 64.8 65.118 7.6294E-06 41 15 4 0 0 0 0.34249 1 35589 35589 24.991 4.5764 1 5904000 + 63606 21916 42293 43252 74315 74315 -0.07645275466848034 TDWQEWNSTL 10 Unmodified _TDWQEWNSTL_ 0 0 0 REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 640.283117 1278.55168 -0.069072 -4.4226E-05 0.5798 0.00037124 0.51073 0.00032701 640.2835304229601 65.464 0.24725 64.98 64.854 65.101 -0.48428 -0.00037018 0.00096677 NaN 24.991 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1987500 + 63607 21916 42293 43252 -0.07645275466848034 TDWQEWNSTL 10 Unmodified _TDWQEWNSTL_ 0 0 0 REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF REV__nc|ENSG00000164463|Q8IUR6-2|CREBRF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 640.283117 1278.55168 0.63315 0.00040539 -0.49712 -0.0003183 0.13602 8.7094E-05 640.2832804877534 64.981 0.31782 64.981 64.8 65.118 7.6294E-06 0.00037018 -0.00041231 NaN 24.991 41 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5904000 + 63608 21916 42293 43252 -0.07645275466848034 TDWSDDESNN 10 Unmodified _TDWSDDESNN_ 0 0 0 ENSG00000100266|ENST00000263246|PACSIN2;nc|ENSG00000100266|Q9UNF0-2|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 ENSG00000100266|ENST00000263246|PACSIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7105712890625 2 591.712721 1181.41089 0.066162 3.9149E-05 -2.0415 -0.001208 -1.9753 -0.0011688 591.7115510135244 62.933 0.29883 62.933 62.774 63.073 0 18 12 2 0 0 0 0.6966 1 35085 35085 3.2813 0.70383 1 1123200 63609 1782 42294 43253 74316 74316 -0.17255898910934775 TDYLYIKPWTS 11 Unmodified _TDYLYIKPWTS_ 0 0 0 REV__nc|ENSG00000182134|Q9Y2W6-3|TDRKH REV__nc|ENSG00000182134|Q9Y2W6-3|TDRKH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2374267578125 3 462.902849 1385.68672 0.37249 0.00017243 -2.0488 -0.00094841 -1.6763 -0.00077598 462.9018466647844 61.971 0.31295 61.938 61.789 62.102 -0.032787 33 15 3 0 0 0 0.59689 1 33838 33838 6.2344 0 1 5884300 + 63610 23243 42295 43254 74317 74317 0.009302046748871362 TEAAVSPL 8 Unmodified _TEAAVSPL_ 0 0 0 REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF REV__ENST00000449476.6_1_17:8139466-8141366:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5485534667969 2 394.213443 786.412334 0.014683 5.7882E-06 2.8276 0.0011147 2.8423 0.0011205 394.2143694806809 38.864 0.25745 38.578 38.415 38.673 -0.28687 24 11 3 0 0 0 8.7369 1 20524 20524 2.3027 0 1 2000700 + 63611 27187 42296 43255 74318 74318 0.010584317064399329 TEACPIILL 9 Unmodified _TEACPIILL_ 0 0 0 ENST00000472475.1_3_3:121449814-121467982:-|nuORF ENST00000472475.1_3_3:121449814-121467982:-|nuORF ENST00000472475.1_3_3:121449814-121467982:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7747802734375 2 486.775354 971.536154 0.24347 0.00011852 -0.84681 -0.00041221 -0.60334 -0.00029369 486.77493366133154 90.314 0.34232 90.314 90.127 90.47 0 35 20 2 0 0 0 0.55775 1 49999 49999 3.9444 0 1 1385400 63612 13905 42297 43256 74319 74319 0.049247664824065396 TEACPIILL 9 Unmodified _TEACPIILL_ 0 0 0 ENST00000472475.1_3_3:121449814-121467982:-|nuORF ENST00000472475.1_3_3:121449814-121467982:-|nuORF ENST00000472475.1_3_3:121449814-121467982:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7748413085938 2 486.775354 971.536154 NaN NaN NaN NaN NaN NaN NaN 95.751 1 95.383 94.883 95.883 -0.36814 0 0 0 0.76439 1 52298 52298 7.2892 0 1 63613 13905 42297 43256 74320 74320 0.049247664824065396 TEAEKMSFE 9 Unmodified _TEAEKMSFE_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2379150390625 2 536.23679 1070.45903 0.21605 0.00011586 0.50236 0.00026939 0.71842 0.00038524 536.2369061506513 72.201 0.51566 72.201 71.819 72.334 0 52 23 3 0 0 0 0.45045 1 40144 40144 10.074 0.6908 1 6472700 63614 10833 42298 43257 74321 74321 -0.07338496524562288 TEARAHPG 8 Unmodified _TEARAHPG_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.4219360351562 1 838.416591 837.409314 -0.0024874 -2.0855E-06 3.9097 0.003278 3.9072 0.0032759 838.4195640955298 58.667 0.20773 58.667 58.56 58.768 0 12 8 2 0 0 0 0.78849 1 32641 32641 9.3474 0 1 853070 + 63615 29000 42299 43258 74322 74322 -0.015893986277092154 TEARKPCP 8 Unmodified _TEARKPCP_ 0 0 0 REV__ENST00000346693.8_1_X:149937177-149937363:-|nuORF REV__ENST00000346693.8_1_X:149937177-149937363:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 901.795654296875 1 901.456013 900.448736 1.0737 0.0009679 -1.2667 -0.0011418 -0.19294 -0.00017393 901.455549962019 82.893 0.28783 82.955 82.788 83.075 0.062004 12 10 2 0 0 0 8.7369 1 45887 45887 10.824 2.9138 1 3951500 + 63616 25761 42300 43259 74323 74323 -0.005470146685070176 TEARVQVWF 9 Unmodified _TEARVQVWF_ 0 0 0 ENSG00000156150|ENST00000647563|ALX3;nc|ENSG00000116132|P54821-2|PRRX1;ENSG00000116132|ENST00000239461|PRRX1;ENSG00000165606|ENST00000374139|DRGX;ENSG00000165462|ENST00000298231|PHOX2A;ENSG00000109132|ENST00000226382|PHOX2B;ENSG00000180318|ENST00000316824|ALX1;nc|ENSG00000135903|P23760-4|PAX3;nc|ENSG00000135903|P23760-5|PAX3;ENSG00000052850|ENST00000652299|ALX4;nc|ENSG00000135903|P23760|PAX3;nc|ENSG00000135903|P23760-6|PAX3;ENSG00000135903|ENST00000392070|PAX3;nc|ENSG00000135903|P23760-8|PAX3;ENSG00000009709|ENST00000420770|PAX7;nc|ENSG00000009709|P23759-2|PAX7;nc|ENSG00000009709|P23759-1|PAX7;ENSG00000004848|ENST00000379044|ARX ENSG00000156150|ENST00000647563|ALX3;ENSG00000009709|ENST00000420770|PAX7;ENSG00000004848|ENST00000379044|ARX ENSG00000004848|ENST00000379044|ARX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.9010620117188 3 379.201341 1134.58219 0.21698 8.228E-05 3.1224 0.001184 3.3393 0.0012663 379.5367436195755 51.028 0.16517 50.975 50.882 51.047 -0.053871 13 7 2 0 0 0 0.20528 1 27605 27605 2.7352 1.6637 1 2270300 63617 6434;405;287 42301 43260 74324 74324 0.02028547708869155 TEAVLKFLKS 10 Unmodified _TEAVLKFLKS_ 0 0 0 nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1;nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1 nc|ENSG00000138698|P52306-4|RAP1GDS1 nc|ENSG00000138698|P52306-4|RAP1GDS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2283325195312 3 379.228897 1134.66486 NaN NaN NaN NaN NaN NaN NaN 55.781 1 55.781 55.281 56.281 0 0 0 0 0.98857 1 31000 31000 1.9064 1.2087 1 63618 5090 42302 43261 74325 74325 0.10291444716995102 TECDVCFT 8 Unmodified _TECDVCFT_ 0 0 0 REV__ENST00000467535.5_1_6:41880803-41888587:-|nuORF REV__ENST00000467535.5_1_6:41880803-41888587:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 459.1720581054688 2 459.172604 916.330655 NaN NaN NaN NaN NaN NaN NaN 2.4726 1 -0.0093676 -0.50937 0.49063 -2.482 0 0 0 0.97444 1 1262 1262 0.69038 0 1 + 63619 19459 42303 43262 74326 74326 -0.13085755039321612 TECSLVAKDGV 11 Unmodified _TECSLVAKDGV_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7799072265625 2 561.278989 1120.54342 0.96912 0.00054395 -1.2847 -0.00072107 -0.31558 -0.00017713 561.2785574644287 81.175 0.67687 80.683 80.465 81.141 -0.49247 118 36 4 0 0 0 0.63851 1 44610 44610 9.3831 0.035688 1 13371000 + 63620 20944 42304 43263 74327 74327 -0.012025457078379986 TECSWDHMY 9 Unmodified _TECSWDHMY_ 0 0 0 ENSG00000107518|ENST00000355044|ATRNL1;ATRNL1|p.Q1115Lfs*8|1|0.26|ENSG00000107518|chr10:115461957-115461964|TTATCAAT/-|frameshift_variant;nc|ENSG00000107518|Q5VV63-2|ATRNL1 ENSG00000107518|ENST00000355044|ATRNL1 ENSG00000107518|ENST00000355044|ATRNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.213623046875 2 586.212792 1170.41103 0.3439 0.0002016 -0.63507 -0.00037228 -0.29117 -0.00017069 586.2126121754372 59.694 0.41381 59.694 59.443 59.857 0 82 18 7 0 0 0 0.54444 1 33174 33174 4.756 2.1785 1 25231000 63621 41 42305 43264 74328 74328 -0.1673589371628168 TEDNGSDYL 9 Unmodified _TEDNGSDYL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2061462402344 2 507.206544 1012.39853 0.10616 5.3843E-05 -1.2881 -0.00065333 -1.1819 -0.00059949 507.20581818378275 24.742 0.45305 21.859 21.653 22.106 -2.8831 34 27 2 0 0 0 0.54444 1 13554 13554 4.756 1.8668 1 5118300 63622 8251 42306 43265 74329 74329 -0.10716890583319127 TEDSSSEDDS 10 Unmodified _TEDSSSEDDS_ 0 0 0 REV__ENST00000568808.5_1_15:55653104-55669251:-|nuORF REV__ENST00000568808.5_1_15:55653104-55669251:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7912292480469 3 357.7914 1070.35237 NaN NaN NaN NaN NaN NaN NaN 34.751 1 34.778 34.278 35.278 0.027401 0 0 0 1.0061 1 18337 18337 0 0 1 + 63623 24579 42307 43266 74330 74330 -0.1799900027606327 TEDVELEEAI 10 Unmodified _TEDVELEEAI_ 0 0 0 nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451 nc|ENSG00000112200|Q9Y4E5-2|ZNF451 nc|ENSG00000112200|Q9Y4E5-2|ZNF451 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.27001953125 2 574.271884 1146.52921 -0.35904 -0.00020619 1.6338 0.00093825 1.2748 0.00073206 574.2723956622749 33.105 0.31555 33.105 32.927 33.243 0 42 15 4 0 0 0 0.67046 1 17408 17408 3.5965 0 1 10373000 63624 2868 42308 43267 74331 74331 -0.03818919655122954 TEDVSDLP 8 Unmodified _TEDVSDLP_ 0 0 0 ENSG00000023445|ENST00000263464|BIRC3 ENSG00000023445|ENST00000263464|BIRC3 ENSG00000023445|ENST00000263464|BIRC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.3999633789062 1 875.399269 874.391992 0.13476 0.00011797 0.68118 0.00059631 0.81594 0.00071427 875.399696206677 97.273 0.67699 97.273 96.95 97.627 0 72 32 3 0 0 0 0.80992 1 53826 53826 0.69038 0 1 2967600 63625 542 42309 43268 74332 74332 -0.050227837440274925 TEDVSFMKNTK 11 Unmodified _TEDVSFMKNTK_ 0 0 0 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 ENSG00000171206|ENST00000643721|TRIM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.3162231445312 2 650.316103 1298.61765 -0.0091624 -5.9584E-06 -1.2884 -0.00083789 -1.2976 -0.00084385 650.3152284090168 58.565 0.18781 58.565 58.511 58.699 0 12 7 2 0 0 0 0.69708 1 32649 32649 4.5289 0.93237 1 764740 63626 8077 42310 43269 74333 74333 -0.01971202616323353 TEEAPYWTYL 10 Unmodified _TEEAPYWTYL_ 0 0 0 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000546490.1_1_12:102091639-102108044:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.7941284179688 2 636.792786 1271.57102 1.2406 0.00078998 0.58968 0.0003755 1.8302 0.0011655 636.7932088447861 97.26 0.41022 91.084 90.974 91.384 -6.1757 40 22 2 0 0 0 0.11654 2 64474 64474;64606 43.858 17.59 1 16054000 63627 2809 42311 43270 74334;74335 74334 -0.05390319175944569 TEEEDEINQY 10 Unmodified _TEEEDEINQY_ 0 0 0 REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 REV__nc|ENSG00000157654|Q9Y2D5-9|PALM2AKAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.8425598144531 3 423.842095 1268.50446 -0.19909 -8.4381E-05 1.5508 0.00065728 1.3517 0.0005729 423.84264343031833 51.896 0.32637 51.896 51.753 52.079 0 20 14 2 0 0 0 0.69064 1 28687 28687 1.9064 0 1 1948700 + 63628 29726 42312 43271 74336 74336 -0.11905599528495259 TEEEIQQALER 11 Unmodified _TEEEIQQALER_ 0 0 0 REV__ENSG00000174243|ENST00000308025|DDX23 REV__ENSG00000174243|ENST00000308025|DDX23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 673.3326416015625 2 673.333338 1344.65212 -0.71764 -0.00048321 0.13433 9.045E-05 -0.5833 -0.00039276 673.3333275723406 27.11 0.28039 27.11 26.972 27.253 0 48 13 5 0 0 0 0.70147 1 14020 14020 4.897 1.6157 1 35058000 + 63629 22779 42313 43272 74337 74337 -0.006416632038508396 TEEGDWISRPL 11 Unmodified _TEEGDWISRPL_ 0 0 0 REV__ENSG00000170577|ENST00000303077|SIX2 REV__ENSG00000170577|ENST00000303077|SIX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.88232421875 3 434.882337 1301.62518 NaN NaN NaN NaN NaN NaN NaN 37.178 1 37.178 36.678 37.678 0 0 0 0 0.94181 1 19757 19757 1.2148 0 1 + 63630 22492 42314 43273 74338 74338 -0.013567270243811436 TEELAYLK 8 Unmodified _TEELAYLK_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7601013183594 2 483.760758 965.506963 0.24204 0.00011709 1.1128 0.00053834 1.3549 0.00065543 483.761265005465 39.89 0.27197 39.89 39.758 40.03 0 31 13 3 0 0 0 0.21098 1 21388 21388 68.081 6.7232 1 3717600 + 63631 169 42315 43274 74339 74339 0.022829454577731667 TEELAYLK 8 Unmodified _TEELAYLK_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 483.760758 965.506963 0.4687 0.00022674 2.1762 0.0010527 2.6449 0.0012795 483.76184904477117 40.174 0.26816 39.877 39.782 40.05 -0.29716 -0.0063446 0.00093433 NaN 68.081 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1332700 + 63632 169 42315 43274 0.022829454577731667 TEEMICSQEL 10 Unmodified _TEEMICSQEL_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8383178710938 3 394.838752 1181.49443 -0.068393 -2.7004E-05 -1.95 -0.00076994 -2.0184 -0.00079695 394.8383182475952 61.854 0.36514 61.854 61.707 62.072 0 39 15 4 0 0 0 0.69064 1 34469 34469 1.9064 0 1 3045000 63633 4746 42316 43275 74340 74340 -0.08906202059097268 TEEPCRHFL 9 Unmodified _TEEPCRHFL_ 0 0 0 REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF REV__ENST00000465745.6_1_9:35090240-35092764:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8468933105469 3 377.846569 1130.51788 NaN NaN NaN NaN NaN NaN NaN 23.548 1 23.548 23.048 24.048 0 0 0 0 0.84564 1 12006 12006 1.0715 0 1 + 63634 22000 42317 43276 74341 74341 -0.04215975439592512 TEEQFDKFI 9 Unmodified _TEEQFDKFI_ 0 0 0 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7799072265625 2 578.779679 1155.5448 -0.19387 -0.00011221 2.3345 0.0013511 2.1406 0.0012389 578.7813783046396 30.821 0.24199 30.821 30.69 30.932 0 22 11 3 0 0 0 0.30562 1 16012 16012 16.942 5.302 1 4132400 + 63635 21273 42318 43277 74342 74342 -0.02674588347417739 TEEQFDKFI 9 Unmodified _TEEQFDKFI_ 0 0 0 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.779679 1155.5448 -0.19387 -0.00011221 2.3345 0.0013511 2.1406 0.0012389 578.7813783046396 30.821 0.24199 30.821 30.69 30.932 0 -0.19482 -0.0003853 NaN 16.942 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4132400 + 63636 21273 42318 43277 -0.02674588347417739 TEEQFDKFI 9 Unmodified _TEEQFDKFI_ 0 0 0 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 REV__nc|ENSG00000155506|Q6PKG0-3|LARP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 578.779679 1155.5448 0.70924 0.00041049 3.652 0.0021137 4.3613 0.0025242 578.7816733364982 35.306 0.22408 31.211 31.075 31.299 -4.0951 0.19482 0.0011399 NaN 16.942 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5774300 + 63637 21273 42318 43277 -0.02674588347417739 TEESHFHDSL 10 Unmodified _TEESHFHDSL_ 0 0 0 REV__ENSG00000115183|ENST00000263635|TANC1 REV__ENSG00000115183|ENST00000263635|TANC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2569580078125 2 601.259642 1200.50473 -1.3467 -0.00080972 -1.1513 -0.00069223 -2.498 -0.001502 601.2595136677154 32.56 0.39758 32.56 32.316 32.714 0 58 23 4 0 0 0 0.33553 1 16921 16921 25.399 0 1 26878000 + 63638 18956 42319 43278 74343 74343 -0.08750135017999128 TEETSKETI 9 Unmodified _TEETSKETI_ 0 0 0 REV__nc|ENSG00000048649|Q96T23-2|RSF1 REV__nc|ENSG00000048649|Q96T23-2|RSF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.280029296875 2 519.253494 1036.49243 0.33288 0.00017285 -0.52218 -0.00027114 -0.1893 -9.8293E-05 519.2528841243171 68.495 0.27898 68.014 67.923 68.202 -0.48071 16 12 2 0 0 0 0.18118 1 37467 37467 1.8442 0.36234 1 1067500 + 63639 29492 42320 43279 74344 74344 -0.02435171481033649 TEFELALLAFY 11 Unmodified _TEFELALLAFY_ 0 0 0 REV__ENST00000326685.11_1_5:148521088-148521160:+|nuORF REV__ENST00000326685.11_1_5:148521088-148521160:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.8990783691406 3 439.563945 1315.67001 1.1707 0.00051462 -1.6457 -0.00072337 -0.47492 -0.00020876 439.56295908733176 91.643 0.43329 85.468 85.233 85.666 -6.1757 52 23 3 0 0 0 0.25654 2 60655 60529;60655 17.863 12.46 1 16574000 + 63640 25563 42321 43280 74345;74346 74346 0.024797037889584317 TEFFDFQL 8 Unmodified _TEFFDFQL_ 0 0 0 REV__ENST00000354870.5_1_8:22035226-22069238:+|nuORF;REV__nc|ENSG00000168487|P13497-6|BMP1 REV__nc|ENSG00000168487|P13497-6|BMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7466430664062 2 523.745108 1045.47566 0.92865 0.00048637 0.98295 0.00051482 1.9116 0.0010012 523.7451619475521 77.836 0.50661 71.66 71.428 71.935 -6.1757 74 28 4 0 0 0 0.72953 1 50895 50895 14.582 2.0501 1 32966000 + 63641 22315;29770 42322 43281 74347 74347 -0.045256275763449594 TEFFFFFVWF 10 Unmodified _TEFFFFFVWF_ 0 0 0 REV__ENST00000487066.5_1_17:16344775-16344985:+|nuORF REV__ENST00000487066.5_1_17:16344775-16344985:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.8355712890625 2 708.8368 1415.65905 NaN NaN NaN NaN NaN NaN NaN 80.696 1 80.696 80.196 81.196 0 0 0 0 0.99248 1 44803 44803 1.4819 0 1 + 63642 27818 42323 43282 74348 74348 -0.03215653794677564 TEFLEEML 8 Unmodified _TEFLEEML_ 0 0 0 REV__nc|ENSG00000116580|Q3T8J9-3|GON4L REV__nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2373046875 2 506.238801 1010.46305 0.45399 0.00022983 -0.44354 -0.00022454 0.010451 5.2908E-06 506.2392153853456 58.889 0.58393 58.889 58.511 59.095 0 56 25 3 0 0 0 0.65867 1 32754 32754 20.871 0 1 8752500 + 63643 19048 42324 43283 74349 74349 -0.04176407030865903 TEFNLNQY 8 Unmodified _TEFNLNQY_ 0 0 0 ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-4|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 ENSG00000111799|ENST00000322507|COL12A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2613525390625 2 514.737814 1027.46108 0.12074 6.215E-05 0.5439 0.00027996 0.66464 0.00034211 514.7388395023992 35.752 0.16387 35.752 35.694 35.858 0 11 7 2 0 0 0 0.78849 1 18898 18898 9.3474 0 1 883830 63644 2828 42325 43284 74350 74350 -0.05155699724468832 TEFTPTEKDE 10 Unmodified _TEFTPTEKDE_ 0 0 0 ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF ENSG00000166710|ENST00000648006|B2M ENSG00000166710|ENST00000648006|B2M MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.7688598632812 2 598.769508 1195.52446 NaN NaN NaN NaN NaN NaN NaN 23.71 1 23.731 23.231 24.231 0.021185 0 0 0 0.12115 1 12217 12217 49.527 21.898 1 63645 7522 42326 43285 74351 74351 -0.06547803797911911 TEFVLLGLSSS 11 Unmodified _TEFVLLGLSSS_ 0 0 0 nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000182652|ENST00000642117|OR4Q3;ENSG00000169488|ENST00000305051|OR4K15 nc|ENSG00000182652|Q8NH05|OR4Q3;ENSG00000169488|ENST00000305051|OR4K15 nc|ENSG00000182652|Q8NH05|OR4Q3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.0597534179688 2 576.810979 1151.6074 NaN NaN NaN NaN NaN NaN NaN 29.416 1 29.446 28.946 29.946 0.030106 0 0 0 0.81193 1 15349 15349 11.495 0.67078 1 63646 9075;7877 42327 43286 74352 74352 0.03766557720769015 TEFYHVPTH 9 Unmodified _TEFYHVPTH_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000163110|Q96HC4-3|PDLIM5;nc|ENSG00000163110|Q96HC4-2|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5141906738281 3 377.513696 1129.51926 -0.836 -0.0003156 1.2727 0.00048045 0.43666 0.00016484 377.51421722921987 32.064 0.22213 32.064 31.961 32.184 0 17 10 2 0 0 0 0.41742 1 16739 16739 11.495 3.8858 1 1078400 63647 6952 42328 43287 74353 74353 -0.04032018079192312 TEGELLLSV 9 Unmodified _TEGELLLSV_ 0 0 0 nc|ENSG00000110171|O75382-4|TRIM3;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 nc|ENSG00000110171|O75382-4|TRIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7662353515625 2 480.76604 959.517527 0.51842 0.00024924 3.2208 0.0015484 3.7392 0.0017977 480.7661640849614 53.287 0.21211 53.287 53.141 53.353 0 18 8 3 0 0 0 0.39863 1 29549 29549 12.532 0 1 2693900 63648 2705 42329 43288 74354 74354 0.03614928112210691 TEGGPRSSL 9 Unmodified _TEGGPRSSL_ 0 0 0 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MSMS AL20221201_MKP_PDAC_01 4 452.229248046875 2 452.230156 902.445759 NaN NaN NaN NaN NaN NaN NaN 19.517 1 16.861 16.361 17.361 -2.6564 0 0 0 0.63508 1 10345 10345 11.495 1.4208 1 63649 5039 42330 43289 74355 74355 -0.009365665216591879 TEGLLGAF 8 Unmodified _TEGLLGAF_ 0 0 0 ENST00000560665.1_1_15:65804856-65809996:-|nuORF ENST00000560665.1_1_15:65804856-65809996:-|nuORF ENST00000560665.1_1_15:65804856-65809996:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 807.4268188476562 1 807.424696 806.417419 1.7101 0.0013807 -0.080555 -6.5042E-05 1.6295 0.0013157 807.4245438090403 79.224 0.5385 73.048 72.849 73.387 -6.1757 42 30 2 0 0 0 0.17881 3 51855 51855;51978;52140 78.445 18.65 1 12624000 63650 15313 42331 43290 74356;74357;74358 74356 0.006467355690460863 TEGQRHRW 8 Unmodified _TEGQRHRW_ 0 0 0 ENST00000265678.8_1_6:166825151-166825295:-|nuORF ENST00000265678.8_1_6:166825151-166825295:-|nuORF ENST00000265678.8_1_6:166825151-166825295:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2935180664062 2 535.267939 1068.52132 0.23235 0.00012437 -0.34603 -0.00018522 -0.11368 -6.0849E-05 535.7685927185732 37.648 0.31625 37.648 37.51 37.826 0 28 15 2 0 0 0 8.7369 1 20099 20099 5.7604 0.52976 1 2506300 63651 11334 42332 43291 74359 74359 -0.010195445507406475 TEHKHTLE 8 Unmodified _TEHKHTLE_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7511291503906 2 497.751256 993.487959 0.85929 0.00042772 -0.58276 -0.00029007 0.27653 0.00013764 497.75107586487866 36.242 0.39715 32.049 31.77 32.168 -4.1928 53 23 3 0 0 0 0.18875 2 21019 21019;21156 74.423 14.033 1 37010000 63652 5659 42333 43292 74360;74361 74360 -0.009045911132830042 TEHRGMEEL 9 Unmodified _TEHRGMEEL_ 0 0 0 REV__ENSG00000182168|ENST00000453304|UNC5C REV__ENSG00000182168|ENST00000453304|UNC5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1699523925781 3 367.837962 1100.49206 1.1588 0.00042625 0.32687 0.00012024 1.4857 0.00054648 368.1716030400764 17.84 0.18861 15.254 15.161 15.349 -2.5866 27 16 2 0 0 0 0.54444 1 9314 9314 2.7352 0 1 1869700 + 63653 23247 42334 43293 74362 74362 -0.05416869681857861 TEIEHDIHLKH 11 Unmodified _TEIEHDIHLKH_ 0 0 0 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 REV__nc|ENSG00000196562|Q8IWU5-2|SULF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.3539428710938 2 686.354408 1370.69426 0.38103 0.00026152 -0.68928 -0.00047309 -0.30825 -0.00021157 686.3539529540375 41.503 0.43834 36.895 36.639 37.077 -4.6079 73 28 3 0 0 0 0.39949 1 24952 24952 21.537 0 1 59870000 + 63654 23846 42335 43294 74363 74363 0.02374356995164817 TEIEQLFL 8 Unmodified _TEIEQLFL_ 0 0 0 REV__ENST00000368171.3_1_1:158149925-158150629:+|nuORF REV__ENST00000368171.3_1_1:158149925-158150629:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2718505859375 2 496.768583 991.522613 0.2768 0.00013751 1.3677 0.00067943 1.6445 0.00081694 496.76915130172586 58.921 0.25893 58.921 58.809 59.068 0 21 11 3 0 0 0 0.72953 1 32806 32806 14.582 0 1 2222000 + 63655 26005 42336 43295 74364 74364 0.02651231974800794 TEIFLLTVMAY 11 Unmodified _TEIFLLTVMAY_ 0 0 0 ENSG00000172208|ENST00000624868|OR4X2;ENSG00000276240|ENST00000641792|OR4E1 ENSG00000172208|ENST00000624868|OR4X2 ENSG00000172208|ENST00000624868|OR4X2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.8486938476562 2 650.846507 1299.67846 1.1821 0.00076936 1.4324 0.0009323 2.6145 0.0017017 650.8474693680921 53.636 0.31086 47.831 47.729 48.04 -5.8042 28 19 2 0 0 0 0.35243 1 33963 33963 24.021 0 1 16281000 63656 8191 42337 43296 74365 74365 0.04060934433937291 TEIFLLTVMAY 11 Unmodified _TEIFLLTVMAY_ 0 0 0 ENSG00000172208|ENST00000624868|OR4X2;ENSG00000276240|ENST00000641792|OR4E1 ENSG00000172208|ENST00000624868|OR4X2 ENSG00000172208|ENST00000624868|OR4X2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 650.846507 1299.67846 0.51244 0.00033352 2.3347 0.0015196 2.8472 0.0018531 650.8487374466663 47.92 0.2214 47.568 47.431 47.652 -0.3526 -0.13189 0.00088453 NaN 24.021 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3297300 63657 8191 42337 43296 0.04060934433937291 TEIRQYFYSFR 11 Unmodified _TEIRQYFYSFR_ 0 0 0 ENST00000504960.1_1_4:6606979-6611590:+|nuORF ENST00000504960.1_1_4:6606979-6611590:+|nuORF ENST00000504960.1_1_4:6606979-6611590:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 755.746826171875 2 755.377883 1508.74121 NaN NaN NaN NaN NaN NaN NaN 94.551 1 94.566 94.066 95.066 0.014244 0 0 0 0.94301 1 52543 52543 0.35063 0 1 63658 14506 42338 43297 74366 74366 0.007192165463038691 TEKHLDTEP 9 Unmodified _TEKHLDTEP_ 0 0 0 REV__nc|ENSG00000251369|Q7Z398-2|ZNF550 REV__nc|ENSG00000251369|Q7Z398-2|ZNF550 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7594604492188 2 535.261653 1068.50875 0.23577 0.0001262 -2.4751 -0.0013248 -2.2393 -0.0011986 535.2601900885903 46.868 0.080112 46.868 46.799 46.879 0 5 3 2 0 0 0 0.21473 1 25638 25638 4.3292 1.44 1 9063900 + 63659 24505 42339 43298 74367 74367 -0.022760455242632815 TEKKAMDVH 9 Oxidation (M) _TEKKAM(Oxidation (M))DVH_ TEKKAM(1)DVH TEKKAM(50)DVH 0 0 1 REV__ENSG00000204287|ENST00000395388|HLA-DRA REV__ENSG00000204287|ENST00000395388|HLA-DRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7653198242188 2 537.766049 1073.51754 0.50105 0.00026945 -1.3542 -0.00072824 -0.85315 -0.00045879 537.764905512745 28.326 0.3746 25.178 24.983 25.358 -3.1482 47 19 3 0 0 0 0.039985 1 15860 15860 49.933 8.0934 1 18581000 + 63660 24153 42340 43299 74368 74368 1855 -0.01627395159448497 TEKLELTEE 9 Unmodified _TEKLELTEE_ 0 0 0 REV__nc|ENSG00000101350|O15066-2|KIF3B REV__nc|ENSG00000101350|O15066-2|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2774047851562 2 546.276969 1090.53938 -0.23776 -0.00012988 0.0074516 4.0706E-06 -0.23031 -0.00012581 546.2769949575788 24.953 0.54221 24.953 24.697 25.239 0 105 43 3 0 0 0 0.047788 1 12729 12729 45.7 45.7 1 33138000 + 63661 18163 42341 43300 74369 74369 -0.002263119298959282 TEKRKKIK 8 Unmodified _TEKRKKIK_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.84033203125 2 515.840208 1029.66586 -0.46072 -0.00023766 0.25826 0.00013322 -0.20246 -0.00010444 515.8403749703648 102.74 0.48727 102.7 102.52 103 -0.04792 24 17 2 0 0 0 0.80722 1 57064 57064 2.3027 0 1 1604100 63662 6146 42342 43301 74370 74370 0.1522170387654569 TEKTDRSFEVL 11 Unmodified _TEKTDRSFEVL_ 0 0 0 REV__ENSG00000168676|ENST00000304372|KCTD19 REV__ENSG00000168676|ENST00000304372|KCTD19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2290344238281 3 442.229625 1323.66705 0.31507 0.00013933 -0.92425 -0.00040873 -0.60918 -0.0002694 442.2291472588673 97.869 0.28098 97.626 97.493 97.774 -0.24277 22 13 2 0 0 0 0.71618 1 53434 53434 1.1098 0 1 8487500 + 63663 22333 42343 43302 74371 74371 0.018158286641209997 TEKVYANVLF 10 Unmodified _TEKVYANVLF_ 0 0 0 REV__MER57F_dup142|chr6:29552528-29552933:-|1.7316768612437874|0.0722232426967899|4.58|177.0|9|2|sense REV__MER57F_dup142|chr6:29552528-29552933:-|1.7316768612437874|0.0722232426967899|4.58|177.0|9|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3209838867188 2 592.321514 1182.62847 0.147 8.7073E-05 2.1591 0.0012789 2.3061 0.001366 592.3231497616889 65.586 0.28682 65.102 64.959 65.246 -0.48428 30 12 3 0 0 0 0.24625 1 35783 35783 30.637 0.79596 1 2209600 + 63664 29464 42344 43303 74372 74372 0.04446567820264136 TELCLSLLRT 10 Unmodified _TELCLSLLRT_ 0 0 0 REV__RPGRIP1|p.P599L|1|0.04|ENSG00000092200|chr14:21324651-21324651|C/T|missense_variant REV__RPGRIP1|p.P599L|1|0.04|ENSG00000092200|chr14:21324651-21324651|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8201293945312 2 574.820824 1147.62709 NaN NaN NaN NaN NaN NaN NaN 69.551 1 69.582 69.082 70.082 0.030914 0 0 0 0.91954 1 38237 38237 7.1017 1.3699 1 + 63665 30093 42345 43304 74373 74373 0.059186104598666134 TELELEFVF 9 Unmodified _TELELEFVF_ 0 0 0 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7879028320312 2 563.786973 1125.55939 0.30651 0.00017281 0.76224 0.00042974 1.0688 0.00060255 563.7874275604088 93.219 0.40391 93.219 93.025 93.429 0 59 25 3 0 0 0 0.49766 2 51573 51479;51573 11.64 5.9084 1 1201400 63666 16298 42346 43305 74374;74375 74375 0.001634838007248618 TELELEFVF 9 Unmodified _TELELEFVF_ 0 0 0 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7865600585938 2 563.786973 1125.55939 0.30922 0.00017433 0.2452 0.00013824 0.55441 0.00031257 563.7871013889632 99.368 0.20637 99.368 99.236 99.442 0 19 7 3 0 0 0 0.21643 1 54845 54845 23.148 10.908 1 4027200 63667 16298 42346 43305 74376 74376 0.001634838007248618 TELFFFLFF 9 Unmodified _TELFFFLFF_ 0 0 0 REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF REV__ENST00000607222.1_1_1:1550199-1550712:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2115478515625 3 404.210954 1209.61103 -0.32515 -0.00013143 1.6611 0.00067143 1.3359 0.00054 404.211743178679 35.444 0.21188 35.444 35.342 35.554 0 15 10 2 0 0 0 0.38785 1 18738 18738 13.042 4.2971 1 3498400 + 63668 29310 42347 43306 74377 74377 0.01461272285268933 TELGFDPPPM 10 Unmodified _TELGFDPPPM_ 0 0 0 REV__ENST00000216237.9_1_22:41626320-41626464:+|nuORF REV__ENST00000216237.9_1_22:41626320-41626464:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7670288085938 2 552.257525 1102.5005 -0.26902 -0.00014857 2.3535 0.0012998 2.0845 0.0011512 552.2586726555437 77.035 0.61525 76.556 76.365 76.98 -0.47945 40 27 2 0 0 0 0.23325 1 42391 42391 10.074 2.1638 1 828080 + 63669 24736 42348 43307 74378 74378 -0.04665315765282685 TELGFDPPPM 10 Unmodified _TELGFDPPPM_ 0 0 0 REV__ENST00000216237.9_1_22:41626320-41626464:+|nuORF REV__ENST00000216237.9_1_22:41626320-41626464:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 552.257525 1102.5005 0.38968 0.0002152 1.9553 0.0010798 2.345 0.001295 552.7596568731965 82.339 0.09169 76.163 76.124 76.215 -6.1757 -0.19612 -0.00041077 NaN 6.2058 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 5252600 + 63670 24736 42348 43307 -0.04665315765282685 TELHATLCTGF 11 Unmodified _TELHATLCTGF_ 0 0 0 REV__ENST00000371162.4_1_2:111995636-111996092:-|nuORF REV__ENST00000371162.4_1_2:111995636-111996092:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2288818359375 2 596.786981 1191.55941 0.54797 0.00032702 -2.9643 -0.001769 -2.4163 -0.001442 596.7856701400902 54.759 0.14885 54.759 54.641 54.79 0 6 5 2 0 0 0 0.27972 1 30397 30397 8.7454 0 1 1018600 + 63671 26074 42349 43308 74379 74379 -0.028708394709383356 TELRPKASFH 10 Unmodified _TELRPKASFH_ 0 0 0 REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF REV__ENST00000494437.1_1_1:11805926-11806319:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 395.8843078613281 3 395.884012 1184.63021 NaN NaN NaN NaN NaN NaN NaN 77.695 1 71.519 71.019 72.019 -6.1757 0 0 0 0.66657 1 50825 50825 15.739 2.866 1 + 63672 27934 42350 43309 74380 74380 0.04527621628903944 TELSITTEI 9 Unmodified _TELSITTEI_ 0 0 0 REV__ENSG00000118292|ENST00000369099|C1orf54 REV__ENSG00000118292|ENST00000369099|C1orf54 MSMS AL20221201_MKP_PDAC_01 4 503.7690734863281 2 503.76878 1005.52301 NaN NaN NaN NaN NaN NaN NaN 29.029 1 25.727 25.227 26.227 -3.3016 0 0 0 0.08978 1 16250 16250 46.021 6.0636 1 + 63673 19143 42351 43310 74381 74381 0.020466069039912327 TELVIPPESI 10 Unmodified _TELVIPPESI_ 0 0 0 REV__ENSG00000135324|ENST00000257776|MRAP2 REV__ENSG00000135324|ENST00000257776|MRAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.8013916015625 2 549.308072 1096.60159 0.39277 0.00021575 -0.8722 -0.00047911 -0.47943 -0.00026336 549.3080817856421 52.74 0.29775 52.288 52.121 52.419 -0.45173 25 14 2 0 0 0 0.22811 1 28445 28445 10.074 0 1 4025300 + 63674 20052 42352 43311 74382 74382 0.05715459209091023 TELWGPGRRT 10 Unmodified _TELWGPGRRT_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2802734375 2 586.812179 1171.60981 0.16245 9.533E-05 0.11042 6.4795E-05 0.27287 0.00016013 586.8132673207887 39.483 0.18897 39.483 39.341 39.53 0 11 8 2 0 0 0 0.22811 1 21173 21173 6.2058 2.9245 1 1854800 63675 16025 42353 43312 74383 74383 0.030864509690900377 TELWINKKQRR 11 Unmodified _TELWINKKQRR_ 0 0 0 REV__ENSG00000104356|ENST00000401707|POP1 REV__ENSG00000104356|ENST00000401707|POP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 736.4259033203125 2 736.428242 1470.84193 NaN NaN NaN NaN NaN NaN NaN 82.708 1 82.77 82.27 83.27 0.062004 0 0 0 0.94301 1 45756 45756 0.35063 0.043601 1 + 63676 18352 42354 43313 74384 74384 0.12534293319799872 TEMEEETEFL 10 Unmodified _TEMEEETEFL_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;ENST00000480674.1_1_9:79267369-79318326:-|nuORF nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.2617797851562 2 629.263201 1256.51185 0.18916 0.00011903 -1.0322 -0.00064951 -0.84302 -0.00053048 629.2624871050992 85.211 0.31456 85.211 85.097 85.411 0 23 13 2 0 0 0 0.68719 1 47220 47220 4.3292 2.0265 1 580240 63677 2457 42355 43314 74385 74385 -0.10614583252413468 TEMEEETEFL 10 Unmodified _TEMEEETEFL_ 0 0 0 nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;ENST00000480674.1_1_9:79267369-79318326:-|nuORF nc|ENSG00000106772|Q8WUY3-4|PRUNE2 nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 629.263201 1256.51185 0.26756 0.00016837 0.18432 0.00011598 0.45188 0.00028435 629.2636522383054 85.823 0.46979 85.322 85.127 85.597 -0.5015 0.055417 0.00058398 NaN 4.3292 51 19 4 NaN NaN NaN NaN 0 NaN NaN 0 1616100 63678 2457 42355 43314 -0.10614583252413468 TEMEEKYG 8 Unmodified _TEMEEKYG_ 0 0 0 nc|ENSG00000160201|Q01081-4|U2AF1;nc|ENSG00000160201|Q01081-2|U2AF1;ENSG00000160201|ENST00000291552|U2AF1;ENST00000393668.3_1_11:71991426-71991847:+|nuORF nc|ENSG00000160201|Q01081-4|U2AF1 nc|ENSG00000160201|Q01081-4|U2AF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2097473144531 2 493.710408 985.406262 -0.50702 -0.00025032 0.15849 7.8249E-05 -0.34852 -0.00017207 493.71232389446476 26.846 0.5688 26.846 26.551 27.12 0 62 26 3 0 0 0 0.78849 1 13812 13812 9.3474 0.75416 1 2170300 63679 6697 42356 43315 74386 74386 -0.08702454587387365 TEMKFWSNR 9 Unmodified _TEMKFWSNR_ 0 0 0 REV__ENSG00000175946|ENST00000684634|KLHL38 REV__ENSG00000175946|ENST00000684634|KLHL38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.1948852539062 3 400.193969 1197.56008 0.1331 5.3267E-05 -0.19217 -7.6906E-05 -0.059068 -2.3639E-05 400.194020993991 25.967 0.80646 23.016 22.754 23.56 -2.9511 132 48 4 0 0 0 0.19127 1 14139 14139 22.658 9.1394 1 400020000 + 63680 22901 42357 43316 74387 74387 -0.030800000312410702 TEMPGKKHKE 10 Unmodified _TEMPGKKHKE_ 0 0 0 REV__ENST00000460539.5_1_2:172188347-172248586:-|nuORF REV__ENST00000460539.5_1_2:172188347-172248586:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8074340820312 2 592.808248 1183.60194 -0.6091 -0.00036108 -1.2778 -0.00075752 -1.887 -0.0011186 592.8075656124039 34.469 0.24895 34.469 34.365 34.614 0 33 12 4 0 0 0 0.56348 1 18145 18145 13.042 0 1 18395000 + 63681 19397 42358 43317 74388 74388 0.017485556573092254 TEMRRRRVRRR 11 Unmodified _TEMRRRRVRRR_ 0 0 0 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 786.9675903320312 2 786.466032 1570.91751 0.64907 0.00051047 -0.29039 -0.00022838 0.35868 0.00028209 786.966776914494 65.803 0.16749 59.628 59.541 59.709 -6.1757 12 9 2 0 0 0 0.30605 1 42759 42759 0 0 1 13623000 + 63682 24127 42359 43318 74389 74389 0.15488992019118086 TENGEDSDY 9 Unmodified _TENGEDSDY_ 0 0 0 REV__ENSG00000115808|ENST00000263918|STRN REV__ENSG00000115808|ENST00000263918|STRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2823486328125 2 515.185808 1028.35706 0.63254 0.00032587 0.31245 0.00016097 0.94498 0.00048684 515.1858753937065 42.441 0.30526 42.441 42.26 42.565 0 34 14 3 0 0 0 0.20528 1 23015 23015 8.5933 0.68312 1 4200000 + 63683 19007 42360 43319 74390 74390 -0.15598071342628828 TENQLQEY 8 Unmodified _TENQLQEY_ 0 0 0 REV__ENST00000534752.5_1_11:47260907-47267123:-|nuORF REV__ENST00000534752.5_1_11:47260907-47267123:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2722778320312 2 512.732729 1023.4509 -0.41666 -0.00021363 0.25781 0.00013219 -0.15884 -8.1444E-05 513.2339417667124 29.897 0.12656 29.897 29.847 29.974 0 9 5 2 0 0 0 8.7369 1 15515 15515 2.8892 0 1 928440 + 63684 19995 42361 43320 74391 74391 -0.05988307449695185 TENSKKAFGL 10 Unmodified _TENSKKAFGL_ 0 0 0 ENSG00000175267|ENST00000389398|VWA3A ENSG00000175267|ENST00000389398|VWA3A ENSG00000175267|ENST00000389398|VWA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5326232910156 3 365.532868 1093.57677 -0.4201 -0.00015356 0.9299 0.00033991 0.5098 0.00018635 365.53327994430435 20.677 0.19346 20.677 20.576 20.77 0 33 12 3 0 0 0 0.52888 1 10392 10392 8.9762 0 1 6849600 63685 8503 42362 43321 74392 74392 0.03372824126381602 TEPDCSQGVT 10 Unmodified _TEPDCSQGVT_ 0 0 0 ENST00000564161.1_1_16:88688823-88689141:+|nuORF ENST00000564161.1_1_16:88688823-88689141:+|nuORF ENST00000564161.1_1_16:88688823-88689141:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7176513671875 2 518.716221 1035.41789 0.54802 0.00028426 2.1417 0.001111 2.6898 0.0013952 518.7171394171427 36.333 0.41421 32.14 31.914 32.328 -4.1928 34 24 2 0 0 0 0.46514 1 21260 21260 18.146 1.0335 1 26404000 63686 15377 42363 43322 74393 74393 -0.09840257564064814 TEPDCSQGVT 10 Unmodified _TEPDCSQGVT_ 0 0 0 ENST00000564161.1_1_16:88688823-88689141:+|nuORF ENST00000564161.1_1_16:88688823-88689141:+|nuORF ENST00000564161.1_1_16:88688823-88689141:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.716221 1035.41789 -0.29811 -0.00015463 2.3392 0.0012134 2.0411 0.0010587 518.7173097890544 31.917 0.26513 31.917 31.778 32.043 0 -0.11191 8.025E-05 NaN 18.146 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3008900 63687 15377 42363 43322 -0.09840257564064814 TEPDKEMKW 9 Unmodified _TEPDKEMKW_ 0 0 0 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.518798828125 3 388.51823 1162.53286 -0.52251 -0.000203 0.35337 0.00013729 -0.16913 -6.5711E-05 388.5182911490584 19.153 0.12253 19.153 19.078 19.2 0 11 7 2 0 0 0 0.58865 1 9551 9551 1.0715 0.3738 1 831870 + 63688 21673 42364 43323 74394 74394 -0.041905283622554634 TEPLTLFGL 9 Unmodified _TEPLTLFGL_ 0 0 0 ENST00000289228.6_1_2:98273211-98273301:-|nuORF ENST00000289228.6_1_2:98273211-98273301:-|nuORF ENST00000289228.6_1_2:98273211-98273301:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7822265625 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 92.59 1 92.109 91.609 92.609 -0.48092 0 0 0 0.84564 1 50605 50605 2.0598 0 1 63689 11457 42365 43324 74395 74395 0.04815822354487409 TEPMNHDQFHL 11 Unmodified _TEPMNHDQFHL_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.8703308105469 3 456.871555 1367.59283 0.22889 0.00010457 0.64282 0.00029369 0.87171 0.00039826 456.87179034472774 14.611 0.062947 12.109 12.084 12.147 -2.5029 19 12 2 0 0 0 0.65846 1 7437 7437 4.1166 0.52395 1 2874900 63690 2904 42366 43325 74396 74396 -0.07625837699015392 TEPMNHDQFHL 11 Unmodified _TEPMNHDQFHL_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.872802734375 3 456.871555 1367.59283 0.31956 0.000146 -0.21182 -9.6772E-05 0.10775 4.9226E-05 456.87185080552047 24.586 0.32995 21.703 21.541 21.871 -2.8831 59 17 5 0 0 0 0.69316 2 13334 13324;13334 2.2527 0 1 9355700 63691 2904 42366 43325 74397;74398 74398 -0.07625837699015392 TEPQFVALTF 10 Unmodified _TEPQFVALTF_ 0 0 0 REV__nc|ENSG00000272980|O95684-2|CEP43 REV__nc|ENSG00000272980|O95684-2|CEP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8005981445312 2 576.800414 1151.58628 0.5571 0.00032133 2.8333 0.0016342 3.3904 0.0019556 576.8003814199601 88.284 0.70878 87.78 87.382 88.091 -0.50423 87 32 4 0 0 0 0.65471 1 48331 48331 13.042 0.80181 1 1533400 + 63692 24272 42367 43326 74399 74399 0.01654592411887279 TEPVLWTN 8 Unmodified _TEPVLWTN_ 0 0 0 REV__ATRNL1|p.Q1115Lfs*8|1|0.26|ENSG00000107518|chr10:115461957-115461964|TTATCAAT/-|frameshift_variant REV__ATRNL1|p.Q1115Lfs*8|1|0.26|ENSG00000107518|chr10:115461957-115461964|TTATCAAT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2454833984375 2 480.245275 958.475997 0.21832 0.00010485 -0.36836 -0.0001769 -0.15004 -7.2055E-05 480.24455011523384 64.508 0.24202 64.508 64.345 64.587 0 13 11 2 0 0 0 0.78031 1 35984 35984 10.074 0 1 1069000 + 63693 16739 42368 43327 74400 74400 -0.0049020785647826415 TEPVQTIDHKL 11 Unmodified _TEPVQTIDHKL_ 0 0 0 REV__ENSG00000197343|ENST00000252713|ZNF655 REV__ENSG00000197343|ENST00000252713|ZNF655 MSMS AL20221201_MKP_PDAC_01 4 427.5647888183594 3 427.566348 1279.67722 NaN NaN NaN NaN NaN NaN NaN 46.411 1 41.331 40.831 41.831 -5.0805 0 0 0 0.70606 1 28659 28659 10.016 0.77249 1 + 63694 23917 42369 43328 74401 74401 0.0485643638937745 TEPVVLPVI 9 Unmodified _TEPVVLPVI_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.58837890625 1 966.58701 965.579734 0.40457 0.00039106 -2.165 -0.0020927 -1.7605 -0.0017016 966.5860152826245 85.216 0.44666 84.714 84.388 84.835 -0.5015 38 22 2 0 0 0 0.12841 2 46523 46469;46523 30.225 5.5509 1 1460500 63695 16488 42370 43329 74402;74403 74403 0.09556699251186274 TEQDEEEDSDE 11 Unmodified _TEQDEEEDSDE_ 0 0 0 nc|ENSG00000158528|Q9ULJ8|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;nc|ENSG00000158528|Q9ULJ8-5|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A nc|ENSG00000158528|Q9ULJ8|PPP1R9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.2286987304688 2 663.228598 1324.44264 NaN NaN NaN NaN NaN NaN NaN 98.174 1 97.979 97.479 98.479 -0.1957 0 0 0 0.9435 1 53619 53619 0 0 1 63696 6593 42371 43330 74404 74404 -0.20659995738287762 TEQFPQAFEF 10 Unmodified _TEQFPQAFEF_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2859497070312 2 622.285128 1242.5557 0.94511 0.00058813 1.0378 0.00064582 1.9829 0.0012339 622.2858403559055 86.288 0.77927 80.112 79.694 80.473 -6.1757 75 42 2 0 0 0 0.52097 1 56685 56685 15.248 2.206 1 24343000 63697 5160 42372 43331 74405 74405 -0.05587185973149644 TEQKRKKKKKK 11 Unmodified _TEQKRKKKKKK_ 0 0 0 REV__ENSG00000055483|ENST00000449938|USP36 REV__ENSG00000055483|ENST00000449938|USP36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 715.4696044921875 2 715.469909 1428.92527 NaN NaN NaN NaN NaN NaN NaN 105.03 1 104.98 104.48 105.48 -0.048737 0 0 0 0.9435 1 58292 58292 0 0 1 + 63698 17288 42373 43332 74406 74406 0.22796029767641812 TEQNNFYEL 9 Unmodified _TEQNNFYEL_ 0 0 0 REV__nc|ENSG00000170264|Q3B820-2|FAM161A REV__nc|ENSG00000170264|Q3B820-2|FAM161A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.8440551757812 3 386.508499 1156.50367 NaN NaN NaN NaN NaN NaN NaN 45.863 1 45.863 45.363 46.363 0 0 0 0 0.56093 1 25031 25031 9.544 0 1 + 63699 22462 42374 43333 74407 74407 -0.06832349386900205 TEREKELSSET 11 Unmodified _TEREKELSSET_ 0 0 0 REV__ENSG00000167074|ENST00000266304|TEF REV__ENSG00000167074|ENST00000266304|TEF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8793640136719 3 436.880773 1307.62049 NaN NaN NaN NaN NaN NaN NaN 15.14 1 15.145 14.645 15.645 0.0057774 0 0 0 0.94181 1 7534 7534 1.2148 0.10508 1 + 63700 22176 42375 43334 74408 74408 -0.021016559577901717 TERRPRPVR 9 Unmodified _TERRPRPVR_ 0 0 0 ENST00000455113.6_1_12:6833212-6833823:+|nuORF;ENST00000539735.5_1_12:6833251-6833791:+|nuORF ENST00000455113.6_1_12:6833212-6833823:+|nuORF ENST00000455113.6_1_12:6833212-6833823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1167.684692382812 1 1166.6865 1165.67922 0.7511 0.0008763 -3.0637 -0.0035744 -2.3126 -0.0026981 1166.6875615760591 89.698 0.15828 89.74 89.645 89.803 0.042183 6 5 2 0 0 0 0.58865 1 49918 49918 2.0598 0 1 7047900 63701 13576 42376 43335 74409 74409 0.10300954708486643 TERTWVSPL 9 Unmodified _TERTWVSPL_ 0 0 0 ENST00000602122.5_1_19:35739374-35739611:+|nuORF ENST00000602122.5_1_19:35739374-35739611:+|nuORF ENST00000602122.5_1_19:35739374-35739611:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8142700195312 2 544.790381 1087.56621 -0.5047 -0.00027495 0.32656 0.0001779 -0.17814 -9.7049E-05 544.7906224173954 48.724 0.20817 48.724 48.6 48.808 0 17 9 2 0 0 0 0.11012 1 26738 26738 15.847 0 1 2207800 63702 15815 42377 43336 74410 74410 0.025928414719373905 TESALPALLTE 11 Unmodified _TESALPALLTE_ 0 0 0 REV__ENST00000349155.6_3_12:115121244-115121814:-|nuORF REV__ENST00000349155.6_3_12:115121244-115121814:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8116455078125 2 572.808436 1143.60232 -0.50909 -0.00029161 1.9645 0.0011253 1.4554 0.00083365 572.8095733556484 30.443 0.34411 30.443 30.263 30.607 0 53 16 4 0 0 0 0.48615 1 15882 15882 17.113 4.0704 1 34461000 + 63703 25774 42378 43337 74411 74411 0.03626253858124073 TESCCSSDAF 10 Unmodified _TESCCSSDAF_ 0 0 0 ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1 ENSG00000144747|ENST00000398559|TMF1 ENSG00000144747|ENST00000398559|TMF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2456665039062 2 525.181157 1048.34776 0.019221 1.0094E-05 -1.1392 -0.00059827 -1.1199 -0.00058817 525.180428880398 55.252 0.33542 55.252 55.054 55.389 0 32 14 3 0 0 0 0.23566 1 30621 30621 7.2892 1.5288 1 3336700 63704 5642 42379 43338 74412 74412 -0.1744787922418709 TESFFNDF 8 Unmodified _TESFFNDF_ 0 0 0 nc|ENSG00000274150|A8MWK0|FADS2B nc|ENSG00000274150|A8MWK0|FADS2B nc|ENSG00000274150|A8MWK0|FADS2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.77587890625 2 503.711265 1005.40798 0.43001 0.0002166 2.6967 0.0013583 3.1267 0.0015749 503.7126940605633 64.584 0.26723 64.584 64.427 64.694 0 22 13 2 0 0 0 8.7369 1 36027 36027 7.2892 0 1 989890 63705 16602 42380 43339 74413 74413 -0.09451077507139871 TESIKRSCPS 10 Unmodified _TESIKRSCPS_ 0 0 0 ENST00000481822.1_1_1:155223346-155224854:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3 ENST00000481822.1_1_1:155223346-155224854:-|nuORF ENST00000481822.1_1_1:155223346-155224854:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8326416015625 2 554.27678 1106.53901 0.34428 0.00019083 -0.019347 -1.0723E-05 0.32493 0.0001801 554.7784365090677 41.033 0.12212 41.031 40.931 41.053 -0.0017929 7 5 2 0 0 0 0.22941 1 21892 21892 13.906 2.2658 1 1018800 63706 6751 42381 43340 74414 74414 -0.010000101307468867 TESMSIFFE 9 Unmodified _TESMSIFFE_ 0 0 0 REV__ENSG00000198081|ENST00000651870|ZBTB14 REV__ENSG00000198081|ENST00000651870|ZBTB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.741943359375 2 545.741708 1089.46886 0.23563 0.00012859 0.32512 0.00017743 0.56075 0.00030603 545.7415635157698 91.815 0.29053 91.334 91.201 91.491 -0.48092 32 18 2 0 0 0 0.41742 1 50183 50183 11.64 0 1 1084400 + 63707 23987 42382 43341 74415 74415 -0.07229308519208644 TESQHERELRE 11 Unmodified _TESQHERELRE_ 0 0 0 nc|ENSG00000149930|Q9UL54-2|TAOK2;ENST00000570844.1_1_16:30002083-30002886:+|nuORF nc|ENSG00000149930|Q9UL54-2|TAOK2 nc|ENSG00000149930|Q9UL54-2|TAOK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.3394775390625 2 707.339486 1412.66442 NaN NaN NaN NaN NaN NaN NaN 87.232 1 87.232 86.732 87.732 0 0 0 0 0.9435 1 48308 48308 0 0 1 63708 16263 42383 43342 74416 74416 -0.02540626740847074 TESSIWEEL 9 Unmodified _TESSIWEEL_ 0 0 0 REV__ENSG00000226372|ENST00000441525|DCAF8L1 REV__ENSG00000226372|ENST00000441525|DCAF8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1730041503906 3 365.173117 1092.49752 0.4311 0.00015742 1.0631 0.00038822 1.4942 0.00054564 365.17394086007573 70.969 0.2934 70.491 70.389 70.682 -0.47735 26 12 3 0 0 0 0.58865 1 38872 38872 1.0715 0 1 775520 + 63709 24391 42384 43343 74417 74417 -0.04502867618407436 TESYKAARGV 10 Unmodified _TESYKAARGV_ 0 0 0 REV__ENSG00000059915|ENST00000020673|PSD REV__ENSG00000059915|ENST00000020673|PSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.1933898925781 3 361.192734 1080.55637 -0.034227 -1.2362E-05 0.97648 0.0003527 0.94225 0.00034033 361.19311500868724 15.035 0.55331 15.041 14.949 15.503 0.0057774 60 33 2 0 0 0 0.63399 1 7616 7616 5.4027 0 1 4398500 + 63710 17322 42385 43344 74418 74418 0.019316534665676954 TEVFSWFQF 9 Unmodified _TEVFSWFQF_ 0 0 0 REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF REV__ENST00000569733.6_1_16:67575293-67580037:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1898803710938 3 397.52208 1189.54441 -0.42504 -0.00016896 -0.49179 -0.0001955 -0.91683 -0.00036446 397.5216609555591 21.682 0.13641 21.682 21.603 21.739 0 31 19 2 0 0 0 0.60485 1 10995 10995 1.0715 0.61312 1 885670 + 63711 17187 42386 43345 74419 74419 -0.042779632766496434 TEVLIEDSY 9 Unmodified _TEVLIEDSY_ 0 0 0 ZFP91|p.D566Y|1|0.04|ENSG00000186660|chr11:58617689-58617689|G/T|missense_variant ZFP91|p.D566Y|1|0.04|ENSG00000186660|chr11:58617689-58617689|G/T|missense_variant ZFP91|p.D566Y|1|0.04|ENSG00000186660|chr11:58617689-58617689|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7586669921875 2 534.758412 1067.50227 0.38901 0.00020803 -0.19275 -0.00010308 0.19626 0.00010495 534.7584838083105 51.63 0.59401 51.63 51.229 51.823 0 47 26 3 0 0 0 0.12841 1 28543 28543 30.225 7.0764 1 12968000 63712 30210 42387 43346 74420 74420 -0.02877983475673318 TEVNEQALL 9 Unmodified _TEVNEQALL_ 0 0 0 REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP REV__nc|ENSG00000117155|Q9Y2D8-2|SSX2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2035217285156 2 508.766571 1015.51859 -0.22823 -0.00011612 -0.87088 -0.00044307 -1.0991 -0.00055919 508.7660690133769 55.961 0.38284 55.961 55.756 56.138 0 57 21 3 0 0 0 0.32871 1 30989 30989 15.847 0 1 58366000 + 63713 19090 42388 43347 74421 74421 0.011451424810957178 TEVVACSVDSQ 11 Unmodified _TEVVACSVDSQ_ 0 0 0 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.258056640625 2 569.258253 1136.50195 0.67893 0.00038649 1.2505 0.00071184 1.9294 0.0010983 569.2586996988603 68.328 0.34959 67.848 67.66 68.01 -0.48071 43 15 4 0 0 0 0.58219 1 37303 37303 12.241 0.60036 1 4730300 63714 3683 42389 43348 74422 74422 -0.06083726467181805 TEVVACSVDSQ 11 Unmodified _TEVVACSVDSQ_ 0 0 0 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.258253 1136.50195 0.43028 0.00024494 2.5484 0.0014507 2.9787 0.0016956 569.7609511763388 67.821 0.2077 67.839 67.748 67.955 0.018028 -0.0042956 0.0011557 NaN 12.241 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 897180 63715 3683 42389 43348 -0.06083726467181805 TEVYQWYLDLR 11 Unmodified _TEVYQWYLDLR_ 0 0 0 ENSG00000137513|ENST00000281038|NARS2;nc|ENSG00000137513|Q96I59-2|NARS2 ENSG00000137513|ENST00000281038|NARS2 ENSG00000137513|ENST00000281038|NARS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.2477416992188 2 743.372266 1484.72998 NaN NaN NaN NaN NaN NaN NaN 94.065 1 94.08 93.58 94.58 0.014244 0 0 0 0.94165 1 52284 52284 1.3295 0 1 63716 4945 42390 43349 74423 74423 0.007003944521784433 TEWDSHYIM 9 Unmodified _TEWDSHYIM_ 0 0 0 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2455444335938 2 591.250231 1180.48591 0.35989 0.00021279 1.1651 0.00068886 1.525 0.00090164 591.251217129385 53.521 0.40147 53.521 53.304 53.705 0 56 18 4 0 0 0 0.14602 1 29656 29656 28.487 10.34 1 24382000 63717 3275 42391 43350 74424 74424 -0.09711387913398539 TEWDSHYIM 9 Unmodified _TEWDSHYIM_ 0 0 0 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 ENSG00000116996|ENST00000366570|ZP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 591.250231 1180.48591 0.31004 0.00018331 2.7098 0.0016021 3.0198 0.0017855 591.2513208540865 54.023 0.1606 53.556 53.507 53.667 -0.46664 0.017352 0.0015622 NaN 28.487 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1339800 63718 3275 42391 43350 -0.09711387913398539 TEWELSVII 9 Unmodified _TEWELSVII_ 0 0 0 nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18 nc|ENSG00000189184|Q9HCL0-2|PCDH18 nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2936401367188 2 545.294965 1088.57538 0.16776 9.1478E-05 0.32938 0.00017961 0.49714 0.00027109 545.2950541566385 96.018 0.24118 95.713 95.52 95.761 -0.30472 21 12 2 0 0 0 0.55144 1 52387 52387 4.3292 0 1 549770 63719 9735 42392 43351 74425 74425 0.034631900376325575 TEWFEYIV 8 Unmodified _TEWFEYIV_ 0 0 0 REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2 REV__nc|ENSG00000103154|Q7Z6G3-2|NECAB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.806884765625 2 543.760758 1085.50696 0.41638 0.00022641 1.2925 0.00070281 1.7089 0.00092922 543.761809808918 39.129 0.25381 39.129 38.99 39.244 0 19 11 2 0 0 0 8.7369 1 21001 21001 14.582 7.8585 1 1971500 + 63720 18286 42393 43352 74426 74426 -0.03237054542250917 TEWKIRQL 8 Unmodified _TEWKIRQL_ 0 0 0 REV__ENST00000540670.6_1_19:5720276-5720402:-|nuORF REV__ENST00000540670.6_1_19:5720276-5720402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.308349609375 2 537.308741 1072.60293 0.22986 0.00012351 -1.0724 -0.00057621 -0.84255 -0.00045271 537.3079980665264 64.265 0.28053 64.265 64.147 64.427 0 22 12 2 0 0 0 0.74163 1 35825 35825 13.508 0 1 1826200 + 63721 28584 42394 43353 74427 74427 0.06953138088510968 TEWSYCDYF 9 Unmodified _TEWSYCDYF_ 0 0 0 nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7 nc|ENSG00000007237|O60861-2|GAS7 nc|ENSG00000007237|O60861-2|GAS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1546325683594 3 405.155069 1212.44338 NaN NaN NaN NaN NaN NaN NaN 32.545 1 32.415 31.915 32.915 -0.12915 0 0 0 0.85737 1 16948 16948 0.26902 0 1 63722 361 42395 43354 74428 74428 -0.15434783041655464 TEWYELRKAPS 11 Unmodified _TEWYELRKAPS_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000527897.1_1_11:64953662-64954841:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.3472290039062 2 690.351334 1378.68811 -0.31938 -0.00022048 -3.8055 -0.0026271 -4.1249 -0.0028476 690.349859449959 34.17 0.20969 33.979 33.865 34.074 -0.19131 16 7 3 0 0 0 0.70403 1 17881 17881 3.8763 0.88109 1 1087800 63723 486 42396 43355 74429 74429 0.013918387636749685 TEYDDNQL 8 Unmodified _TEYDDNQL_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7368774414062 2 499.209086 996.40362 -0.052465 -2.6191E-05 0.77358 0.00038618 0.72112 0.00035999 500.2104149116509 48.876 0.26826 48.876 48.736 49.004 0 23 12 3 0 0 0 8.7369 1 26908 26908 10.183 0.83596 1 3600100 + 63724 21164 42397 43356 74430 74430 -0.09472586720710297 TEYFARVS 8 Unmodified _TEYFARVS_ 0 0 0 ENST00000395253.3_1_9:99884091-99884715:+|nuORF;ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP ENST00000395253.3_1_9:99884091-99884715:+|nuORF ENST00000395253.3_1_9:99884091-99884715:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 972.3157958984375 1 972.478522 971.471246 0.055877 5.434E-05 2.4642 0.0023964 2.52 0.0024507 972.4821173363737 85.855 0.12988 85.917 85.801 85.931 0.061638 5 4 2 0 0 0 8.7369 1 47518 47518 13.508 3.3245 1 43880000 63725 12526 42398 43357 74431 74431 -0.01563091999230437 TEYIHDWW 8 Unmodified _TEYIHDWW_ 0 0 0 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 ENSG00000072315|ENST00000262839|TRPC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8388977050781 3 383.83818 1148.49271 NaN NaN NaN NaN NaN NaN NaN 1.5707 1 1.4974 0.99744 1.9974 -0.07329 0 0 0 0.97444 1 787 787 0.40072 0.1317 1 63726 1079 42399 43358 74432 74432 -0.07559706970528168 TEYTALDELF 10 Unmodified _TEYTALDELF_ 0 0 0 REV__ENSG00000174576|ENST00000311034|NPAS4 REV__ENSG00000174576|ENST00000311034|NPAS4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 400.8572998046875 3 401.192288 1200.55504 0.40293 0.00016165 -0.08223 -3.299E-05 0.3207 0.00012866 401.1925084345609 26.242 0.37603 23.291 23.184 23.56 -2.9511 34 20 2 0 0 0 0.23489 1 14493 14493 9.544 3.3521 1 9615500 + 63727 22802 42400 43359 74433 74433 -0.03722025412889707 TEYVCKED 8 Unmodified _TEYVCKED_ 0 0 0 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 REV__nc|ENSG00000197324|Q7Z4F1-2|LRP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7116088867188 2 493.710408 985.406262 -0.50702 -0.00025032 0.15849 7.8249E-05 -0.34852 -0.00017207 493.71232389446476 26.846 0.5688 26.846 26.551 27.12 0 62 26 3 0 0 0 0.72953 1 13915 13915 14.582 2.0501 1 2170300 + 63728 23916 42401 43360 74434 74434 -0.08702454587398734 TEYYYLNFTE 10 Unmodified _TEYYYLNFTE_ 0 0 0 REV__nc|ENSG00000135333|Q15375-2|EPHA7 REV__nc|ENSG00000135333|Q15375-2|EPHA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.7958984375 2 671.795526 1341.5765 NaN NaN NaN NaN NaN NaN NaN 74.176 1 74.176 73.676 74.676 0 0 0 0 1.0024 1 41281 41281 0.40072 0 1 + 63729 20053 42402 43361 74435 74435 -0.08062640384127917 TFAEYYKTKYN 11 Unmodified _TFAEYYKTKYN_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.9001159667969 3 476.566237 1426.67688 0.14931 7.1157E-05 -0.20185 -9.6193E-05 -0.052533 -2.5035E-05 476.56607357137676 54.506 0.39874 54.039 53.882 54.281 -0.46664 31 20 2 0 0 0 0.71341 2 29509 29509;29563 1.2148 0 1 2751000 63730 1865 42403 43362 74436;74437 74436 -0.019389833304785498 TFAEYYKTKYN 11 Unmodified _TFAEYYKTKYN_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 476.566237 1426.67688 0.6798 0.00032397 2.3654 0.0011273 3.0452 0.0014512 476.90199789409905 53.923 0.09211 53.923 53.876 53.968 0 -0.058257 0.0032667 NaN 1.2148 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 502990 63731 1865 42403 43362 -0.019389833304785498 TFAKLTHLF 9 Unmodified _TFAKLTHLF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9 ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.8746948242188 3 359.874565 1076.60187 0.60934 0.00021928 0.20468 7.3661E-05 0.81402 0.00029295 359.8745592571449 58.309 0.33587 58.248 58.058 58.394 -0.060722 44 16 4 0 0 0 0.062454 2 31711 31711;31812 41.956 27.117 1 5775100 63732 9332 42404 43363 74438;74439 74438 0.06662923719591163 TFAKLTHLF 9 Unmodified _TFAKLTHLF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9 ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3078002929688 2 539.30821 1076.60187 0.70054 0.0003778 -2.0174 -0.001088 -1.3169 -0.0007102 539.3071336111586 58.28 0.23603 58.219 58.077 58.313 -0.060719 17 11 2 0 0 0 0.037253 1 31739 31739 39.95 18.203 1 2058700 63733 9332 42404 43363 74440 74440 0.06662923719591163 TFAKLTHLF 9 Unmodified _TFAKLTHLF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9 ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8748779296875 3 359.874565 1076.60187 1.8007 0.00064803 -0.12896 -4.6411E-05 1.6717 0.00060161 359.8743005201021 92.028 0.33002 85.853 85.705 86.035 -6.1757 29 19 2 0 0 0 0.047714 2 60807 60807;60955 45.74 34.1 1 17134000 63734 9332 42404 43363 74441;74442 74441 0.06662923719591163 TFAVTDELVF 10 Unmodified _TFAVTDELVF_ 0 0 0 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2940063476562 2 571.292422 1140.57029 0.35857 0.00020485 1.3881 0.00079301 1.7467 0.00099786 571.2934110477304 90.902 0.41074 90.902 90.648 91.059 0 39 18 3 0 0 0 0.67033 1 50291 50291 6.2058 2.6093 1 549220 63735 2007 42405 43364 74443 74443 0.005628861749983116 TFAVTDELVF 10 Unmodified _TFAVTDELVF_ 0 0 0 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2930297851562 2 571.292422 1140.57029 0.59056 0.00033738 0.29854 0.00017056 0.8891 0.00050794 571.2925070284418 91.391 0.412 90.896 90.663 91.075 -0.49458 37 18 3 0 0 0 0.42068 2 49989 49892;49989 20.454 12.543 1 567620 63736 2007 42405 43364 74444;74445 74445 0.005628861749983116 TFAVTDELVF 10 Unmodified _TFAVTDELVF_ 0 0 0 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1141.592651367188 1 1141.57757 1140.57029 0.475 0.00054225 1.0354 0.001182 1.5104 0.0017242 1141.5786492324355 99.594 0.18382 93.419 93.341 93.525 -6.1757 28 11 3 0 0 0 0.0057604 1 66332 66332 96.285 58.311 1 126440000 63737 2007 42405 43364 74446 74446 0.005628861749983116 TFAVTDELVF 10 Unmodified _TFAVTDELVF_ 0 0 0 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 ENSG00000101997|ENST00000376227|CCDC22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.292236328125 2 571.292422 1140.57029 0.68478 0.00039121 -0.092924 -5.3087E-05 0.59186 0.00033812 571.2922431730907 99.605 0.2338 93.429 93.324 93.558 -6.1757 51 14 5 0 0 0 0.0093317 1 66349 66349 88.904 48.946 1 371910000 63738 2007 42405 43364 74447 74447 0.005628861749983116 TFCDSQLRLLF 11 Carbamidomethyl (C) _TFC(Carbamidomethyl (C))DSQLRLLF_ TFC(1)DSQLRLLF TFC(95)DSQLRLLF 0 1 0 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.3567504882812 2 700.355562 1398.69657 1.197 0.00083836 -0.32142 -0.00022511 0.87563 0.00061325 700.3550880090612 98.303 0.090691 92.128 92.057 92.148 -6.1757 6 5 2 0 0 0 5.2027E-06 1 65199 65199 94.909 62.123 1 17700000 63739 418 42406 43365 74448 74448 23 0.01317069408628413 TFCQKRRD 8 Unmodified _TFCQKRRD_ 0 0 0 REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8472290039062 3 351.846792 1052.51855 NaN NaN NaN NaN NaN NaN NaN 0.14418 1 -2.3378 -2.8378 -1.8378 -2.482 0 0 0 0.97444 1 79 79 0.40072 0 1 + 63740 20893 42407 43366 74449 74449 -0.005611359998965781 TFCQKRRD 8 Unmodified _TFCQKRRD_ 0 0 0 REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8472290039062 3 351.846792 1052.51855 NaN NaN NaN NaN NaN NaN NaN 0.4792 1 -2.0028 -2.5028 -1.5028 -2.482 0 0 0 0.97444 1 256 256 1.6526 0 1 + 63741 20893 42407 43366 74450 74450 -0.005611359998965781 TFCQKRRD 8 Unmodified _TFCQKRRD_ 0 0 0 REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8463745117188 3 351.846792 1052.51855 NaN NaN NaN NaN NaN NaN NaN 2.8866 1 0.40463 -0.095373 0.90463 -2.482 0 0 0 0.97444 1 1472 1472 0.40072 0 1 + 63742 20893 42407 43366 74451 74451 -0.005611359998965781 TFCQKRRD 8 Unmodified _TFCQKRRD_ 0 0 0 REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.846435546875 3 351.846792 1052.51855 NaN NaN NaN NaN NaN NaN NaN 5.1919 1 2.71 2.21 3.21 -2.482 0 0 0 0.97444 1 2636 2636 0.40072 0 1 + 63743 20893 42407 43366 74452 74452 -0.005611359998965781 TFCQKRRD 8 Unmodified _TFCQKRRD_ 0 0 0 REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF REV__ENST00000524004.5_3_8:51571197-51621559:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8458557128906 3 351.846792 1052.51855 NaN NaN NaN NaN NaN NaN NaN 6.2488 1 3.7668 3.2668 4.2668 -2.482 0 0 0 0.97444 1 3162 3162 0.40072 0 1 + 63744 20893 42407 43366 74453 74453 -0.005611359998965781 TFCQNQCRDG 10 Unmodified _TFCQNQCRDG_ 0 0 0 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 REV__nc|ENSG00000147548|Q9BZ95-4|NSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1594848632812 3 391.158819 1170.45463 0.55638 0.00021763 0.57681 0.00022563 1.1332 0.00044326 391.15897033066557 71.786 0.45153 71.31 71.073 71.525 -0.47609 44 17 3 0 0 0 0.67459 1 39251 39251 3.0723 0 1 3101200 + 63745 20899 42408 43367 74454 74454 -0.12378284219175839 TFCRPLLYL 9 Unmodified _TFCRPLLYL_ 0 0 0 REV__ENSG00000175283|ENST00000372586|DOLK REV__ENSG00000175283|ENST00000372586|DOLK MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3130493164062 2 563.309895 1124.60524 2.4744 0.0013939 -1.9594 -0.0011037 0.51507 0.00029014 563.3091492611521 62.664 0.37344 56.488 56.302 56.676 -6.1757 33 18 3 0 0 0 0.19361 1 40416 40416 25.399 0 1 22890000 + 63746 22859 42409 43368 74455 74455 0.047918505019652 TFDAGAGIAL 10 Unmodified _TFDAGAGIAL_ 0 0 0 ENSG00000111640|ENST00000229239|GAPDH;nc|ENSG00000111640|P04406-2|GAPDH;ENST00000466525.1_1_12:6646524-6647333:+|nuORF ENSG00000111640|ENST00000229239|GAPDH ENSG00000111640|ENST00000229239|GAPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2452697753906 2 468.245275 934.475997 0.6022 0.00028198 1.0216 0.00047838 1.6239 0.00076036 468.24585705368315 66.383 0.27439 66.383 66.216 66.491 0 15 11 2 0 0 0 0.6606 1 37037 37037 7.2892 1.5288 1 662320 63747 2801 42410 43369 74456 74456 0.006137921435083626 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2372741699219 2 485.23745 968.460347 0.41801 0.00020284 -0.27685 -0.00013434 0.14116 6.8495E-05 485.23728868855824 67.896 0.48989 67.896 67.656 68.146 0 60 23 3 0 0 0 0.038285 2 37787 37787;37885 50.855 29.108 1 13511000 63748 9990 42411 43370 74457;74458 74457 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 969.4667358398438 1 969.467623 968.460347 0.3143 0.0003047 -0.31471 -0.00030511 -0.00041816 -4.0539E-07 969.4672369015898 67.887 0.37933 67.887 67.697 68.076 0 39 18 3 0 0 0 0.0090948 2 37805 37805;37905 85.272 43.432 1 4257400 63749 9990 42411 43370 74459;74460 74459 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2379150390625 2 485.23745 968.460347 0.58427 0.00028351 0.2038 9.8892E-05 0.78807 0.0003824 485.23759178128216 68.432 0.39581 67.952 67.745 68.141 -0.48071 51 17 4 0 0 0 0.031062 2 37428 37330;37428 54.774 54.774 1 13382000 63750 9990 42411 43370 74461;74462 74462 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 969.4697265625 1 969.467623 968.460347 0.36507 0.00035392 1.1631 0.0011276 1.5282 0.0014815 969.4682442595931 68.417 0.31145 67.937 67.764 68.076 -0.48071 33 13 3 0 0 0 0.0090948 2 37439 37342;37439 85.272 35.339 1 5128900 63751 9990 42411 43370 74463;74464 74464 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2380065917969 2 485.23745 968.460347 0.84166 0.0004084 0.44483 0.00021585 1.2865 0.00062425 485.2375983182606 75.515 0.82613 69.339 68.943 69.769 -6.1757 102 44 3 0 0 0 0.023164 4 49360 49240;49360;49481;49619 60.39 50.855 1 57920000 63752 9990 42411 43370 74465;74466;74467;74468 74466 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 969.4663696289062 1 969.467623 968.460347 0.57683 0.00055921 0.30677 0.0002974 0.8836 0.00085662 969.467453620395 75.506 0.57082 69.33 69.009 69.58 -6.1757 53 30 2 0 0 0 0.0083938 3 49382 49264;49382;49521 108 49.318 1 19698000 63753 9990 42411 43370 74469;74470;74471 74470 -0.025144943735199377 TFDAGLQAF 9 Unmodified _TFDAGLQAF_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 485.23745 968.460347 0.53027 0.00025731 1.2915 0.00062666 1.8217 0.00088397 485.2379774001357 67.937 0.22823 67.962 67.836 68.064 0.025154 0.0251 0.0011029 NaN 54.774 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 913160 63754 9990 42411 43370 -0.025144943735199377 TFDAHLTEL 9 Unmodified _TFDAHLTEL_ 0 0 0 nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 nc|ENSG00000158467|Q96HN2-4|AHCYL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7623291015625 2 523.761289 1045.50803 1.0338 0.00054146 -0.26851 -0.00014064 0.76527 0.00040082 523.7610842239606 54.677 0.32507 54.677 54.505 54.83 0 36 13 3 0 0 0 0.0095811 1 30326 30326 81.613 47.511 1 21132000 63755 6587 42412 43371 74472 74472 -0.01290840173351171 TFDAQIVII 9 Unmodified _TFDAQIVII_ 0 0 0 nc|ENSG00000103342|P15170-2|GSPT1;ENSG00000103342|ENST00000434724|GSPT1;nc|ENSG00000103342|P15170|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 nc|ENSG00000103342|P15170-2|GSPT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7744445800781 2 510.292225 1018.5699 1.2206 0.00062287 0.33133 0.00016907 1.5519 0.00079195 510.7937311681412 97.295 0.090088 91.119 91.08 91.17 -6.1757 5 4 2 0 0 0 0.15672 1 64502 64502 26.884 6.43 1 3179500 63756 2129 42413 43372 74473 74473 0.061355112458159056 TFDASRTTF 9 Unmodified _TFDASRTTF_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.251220703125 2 523.251089 1044.48762 0.4032 0.00021097 -0.030127 -1.5764E-05 0.37307 0.00019521 523.2511378096939 37.639 0.46693 37.639 37.458 37.925 0 57 22 4 0 0 0 0.047714 2 20108 19987;20108 45.74 20.468 1 98606000 63757 4544 42414 43373 74474;74475 74475 -0.032840108331583906 TFDASRTTF 9 Unmodified _TFDASRTTF_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.25048828125 2 523.251089 1044.48762 -0.071799 -3.7569E-05 -0.032061 -1.6776E-05 -0.10386 -5.4345E-05 523.2511015281891 37.961 0.39661 37.69 37.506 37.902 -0.27133 55 19 4 0 0 0 0.0093064 2 19917 19917;20018 83.429 39.57 1 81758000 63758 4544 42414 43373 74476;74477 74476 -0.032840108331583906 TFDASRTTF 9 Unmodified _TFDASRTTF_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.2512817382812 2 523.251089 1044.48762 -0.14261 -7.462E-05 -0.52557 -0.00027501 -0.66818 -0.00034963 523.2507648092403 37.619 0.19487 37.636 37.515 37.71 0.01704 15 9 2 0 0 0 0.033587 1 19962 19962 53.404 22.767 1 3117000 63759 4544 42414 43373 74478 74478 -0.032840108331583906 TFDASRTTF 9 Unmodified _TFDASRTTF_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000554315.5_1_14:73753704-73876743:-|nuORF nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2514038085938 2 523.251089 1044.48762 0.79103 0.00041391 -0.38727 -0.00020264 0.40376 0.00021127 523.2509933352746 43.058 0.63579 38.293 37.929 38.565 -4.7648 109 42 4 0 0 0 0.014182 3 25961 25961;26090;26228 69.338 38.702 1 375810000 63760 4544 42414 43373 74479;74480;74481 74479 -0.032840108331583906 TFDDIVHSF 9 Unmodified _TFDDIVHSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.75341796875 2 540.753464 1079.49238 0.2973 0.00016076 -0.045794 -2.4763E-05 0.2515 0.000136 540.7535391665563 66.063 0.51544 66.063 65.81 66.325 0 97 25 5 0 0 0 0.0083938 3 36870 36763;36870;36970 108 65.902 1 80965000 63761 7904 42415 43374 74482;74483;74484 74483 -0.044191266903681026 TFDDIVHSF 9 Unmodified _TFDDIVHSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.753662109375 2 540.753464 1079.49238 0.044836 2.4245E-05 0.72912 0.00039428 0.77396 0.00041852 540.753819184376 66.607 0.73047 66.124 65.88 66.61 -0.48323 128 34 7 0 0 0 0.0082281 3 36447 36341;36447;36553 92.822 54.671 1 57920000 63762 7904 42415 43374 74485;74486;74487 74486 -0.044191266903681026 TFDDIVHSF 9 Unmodified _TFDDIVHSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7545776367188 2 540.753464 1079.49238 0.96762 0.00052324 -0.056575 -3.0593E-05 0.91104 0.00049265 540.7534271253924 66.094 0.24863 66.103 65.973 66.222 0.0095673 29 12 3 0 0 0 0.010818 1 36262 36262 78.149 39.998 1 4887700 63763 7904 42415 43374 74488 74488 -0.044191266903681026 TFDDIVHSF 9 Unmodified _TFDDIVHSF_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7540893554688 2 540.753464 1079.49238 0.75384 0.00040764 0.030061 1.6256E-05 0.7839 0.0004239 540.7535965202775 72.541 1.1178 66.365 65.941 67.059 -6.1757 137 56 3 0 0 0 0.0031966 6 47725 47245;47363;47485;47604;47725;47858 125.62 83.53 1 51775000 63764 7904 42415 43374 74489;74490;74491;74492;74493;74494 74493 -0.044191266903681026 TFDDLPARF 9 Unmodified _TFDDLPARF_ 0 0 0 ENST00000491086.5_1_3:149531035-149619859:+|nuORF;ENSG00000082996|ENST00000392894|RNF13 ENST00000491086.5_1_3:149531035-149619859:+|nuORF ENST00000491086.5_1_3:149531035-149619859:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2716064453125 2 541.269281 1080.52401 0.4927 0.00026668 2.439 0.0013202 2.9317 0.0015868 541.2700359416599 59.704 0.23657 59.704 59.602 59.839 0 18 10 2 0 0 0 0.047788 1 33317 33317 45.7 19.431 1 5967000 63765 1355 42416 43375 74495 74495 -0.013031339364488304 TFDDVAVHF 9 Unmodified _TFDDVAVHF_ 0 0 0 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.75048828125 2 525.748182 1049.48181 0.88062 0.00046298 0.068835 3.619E-05 0.94945 0.00049917 525.74818437483 60.414 0.46788 60.414 60.178 60.646 0 67 20 4 0 0 0 0.03327 2 33647 33647;33759 53.576 23.351 1 13877000 63766 9820 42417 43376 74496;74497 74496 -0.04095109344825687 TFDDVAVHF 9 Unmodified _TFDDVAVHF_ 0 0 0 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 ENSG00000196453|ENST00000247930|ZNF777 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7855224609375 2 525.748182 1049.48181 0.66892 0.00035168 -0.50204 -0.00026395 0.16688 8.7737E-05 525.7479086298389 66.957 0.47733 60.781 60.503 60.981 -6.1757 40 26 2 0 0 0 0.10271 1 43522 43522 53.576 53.576 1 21776000 63767 9820 42417 43376 74498 74498 -0.04095109344825687 TFDDVAVTF 9 Unmodified _TFDDVAVTF_ 0 0 0 ENSG00000204524|ENST00000414468|ZNF805;ENSG00000083844|ENST00000263095|ZNF264 ENSG00000204524|ENST00000414468|ZNF805 ENSG00000204524|ENST00000414468|ZNF805 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7428588867188 2 507.742565 1013.47058 0.38591 0.00019594 -0.23992 -0.00012182 0.146 7.4128E-05 507.742284627095 72.274 0.27339 72.274 72.16 72.433 0 24 11 3 0 0 0 0.41742 1 40304 40304 11.64 2.2929 1 944230 63768 10297 42418 43377 74499 74499 -0.03561931438946431 TFDEAMADL 9 Oxidation (M) _TFDEAM(Oxidation (M))ADL_ TFDEAM(1)ADL TFDEAM(46)ADL 0 0 1 nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN nc|ENSG00000175793|P31947-2|SFN nc|ENSG00000175793|P31947-2|SFN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2177734375 2 514.71569 1027.41683 0.18264 9.401E-05 0.22759 0.00011714 0.41023 0.00021115 514.7153936979196 45.596 0.1879 45.596 45.497 45.685 0 16 9 2 0 0 0 0.047196 1 24851 24851 46.021 24.274 1 4935700 63769 8542 42419 43378 74500 74500 1449 -0.09578471932991306 TFDEIASGF 9 Unmodified _TFDEIASGF_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.4530639648438 1 986.446553 985.439277 -0.044812 -4.4205E-05 1.7397 0.0017161 1.6949 0.0016719 986.448140998865 65.461 0.27644 65.461 65.32 65.597 0 23 10 3 0 0 0 0.026094 1 36486 36486 57.471 19.32 1 1870000 63770 3297 42420 43379 74501 74501 -0.05402504473033787 TFDEIASGF 9 Unmodified _TFDEIASGF_ 0 0 0 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 ENSG00000117394|ENST00000426263|SLC2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.727294921875 2 493.726915 985.439277 0.067687 3.3419E-05 1.1002 0.00054318 1.1678 0.0005766 493.72736550366426 65.467 0.27644 65.467 65.32 65.597 0 20 10 3 0 0 0 0.070838 1 36504 36504 39.957 18.211 1 2170900 63771 3297 42420 43379 74502 74502 -0.05402504473033787 TFDEIVNI 8 Unmodified _TFDEIVNI_ 0 0 0 nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12 nc|ENSG00000197958|P30050-2|RPL12 nc|ENSG00000197958|P30050-2|RPL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 950.4804077148438 1 950.482939 949.475663 -0.46669 -0.00044358 -1.5634 -0.001486 -2.0301 -0.0019296 950.4810314393777 71.956 0.14869 71.956 71.883 72.032 0 11 6 2 0 0 0 0.61462 1 40073 40073 24.674 5.2349 1 755510 63772 10029 42421 43380 74503 74503 -0.0010962757631887143 TFDEIVNI 8 Unmodified _TFDEIVNI_ 0 0 0 nc|ENSG00000197958|P30050-2|RPL12;ENSG00000197958|ENST00000361436|RPL12 nc|ENSG00000197958|P30050-2|RPL12 nc|ENSG00000197958|P30050-2|RPL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7442932128906 2 475.745108 949.475663 0.11309 5.3801E-05 0.56713 0.00026981 0.68022 0.00032361 475.7450682856164 71.995 0.29623 71.995 71.819 72.115 0 18 13 2 0 0 0 0.46494 1 40081 40081 38.151 7.9264 1 647180 63773 10029 42421 43380 74504 74504 -0.0010962757631887143 TFDEMDHL 8 Unmodified _TFDEMDHL_ 0 0 0 REV__ENSG00000198075|ENST00000272452|SULT1C4 REV__ENSG00000198075|ENST00000272452|SULT1C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2098693847656 2 504.210575 1006.4066 0.64587 0.00032566 -0.29565 -0.00014907 0.35022 0.00017659 504.2103531421332 67.906 0.27736 67.906 67.766 68.043 0 22 13 2 0 0 0 0.67481 1 37831 37831 19.439 11.529 1 1730800 + 63774 23986 42422 43381 74505 74505 -0.0963503486755144 TFDEMDHL 8 Unmodified _TFDEMDHL_ 0 0 0 REV__ENSG00000198075|ENST00000272452|SULT1C4 REV__ENSG00000198075|ENST00000272452|SULT1C4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2111206054688 2 504.210575 1006.4066 -0.00181 -9.126E-07 1.8182 0.00091678 1.8164 0.00091586 504.21158271171606 68.427 0.27132 67.946 67.804 68.076 -0.48071 16 11 2 0 0 0 0.72953 1 37398 37398 14.582 0 1 1364900 + 63775 23986 42422 43381 74506 74506 -0.0963503486755144 TFDEMDHL 8 Unmodified _TFDEMDHL_ 0 0 0 REV__ENSG00000198075|ENST00000272452|SULT1C4 REV__ENSG00000198075|ENST00000272452|SULT1C4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.210575 1006.4066 0.64587 0.00032566 -0.29565 -0.00014907 0.35022 0.00017659 504.2103531421332 67.906 0.27736 67.906 67.766 68.043 0 -0.020088 -0.0004699 NaN 19.439 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1730800 + 63776 23986 42422 43381 -0.0963503486755144 TFDEMDHL 8 Unmodified _TFDEMDHL_ 0 0 0 REV__ENSG00000198075|ENST00000272452|SULT1C4 REV__ENSG00000198075|ENST00000272452|SULT1C4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 504.210575 1006.4066 -0.00181 -9.126E-07 1.8182 0.00091678 1.8164 0.00091586 504.21158271171606 68.427 0.27132 67.946 67.804 68.076 -0.48071 0.020088 0.0016618 NaN 19.439 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1364900 + 63777 23986 42422 43381 -0.0963503486755144 TFDETVSTY 9 Unmodified _TFDETVSTY_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7352905273438 2 531.734937 1061.45532 0.93722 0.00049835 -0.62274 -0.00033113 0.31448 0.00016722 531.7347031755028 42.887 0.2499 42.887 42.756 43.006 0 24 12 2 0 0 0 0.042911 1 23220 23220 48.346 31.404 1 10514000 63778 1485 42423 43382 74507 74507 -0.07294843026784292 TFDEVLELM 9 Unmodified _TFDEVLELM_ 0 0 0 nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B nc|ENSG00000008869|Q9P2D3-2|HEATR5B;HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.296630859375 2 548.765183 1095.51581 1.1227 0.00061609 1.1019 0.00060469 2.2246 0.0012208 548.7648061320349 100.26 0.15697 94.08 94.03 94.187 -6.1757 17 9 2 0 0 0 0.030883 1 67008 67008 60.39 42.255 1 16654000 63779 16016;398 42424 43383 74508 74508 -0.02812448968074932 TFDFVHNVM 9 Oxidation (M) _TFDFVHNVM(Oxidation (M))_ TFDFVHNVM(1) TFDFVHNVM(60) 0 0 1 nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3;ENSG00000156469|ENST00000287025|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 nc|ENSG00000156469|Q96E29-3|MTERF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2559814453125 2 563.255317 1124.49608 0.73357 0.00041319 -0.12472 -7.0248E-05 0.60885 0.00034294 563.2553500944917 52.316 0.3942 51.882 51.569 51.964 -0.43367 52 19 3 0 0 0 0.023481 2 28253 28145;28253 60.074 35.723 1 4593500 63780 6456 42425 43384 74509;74510 74510 1133 -0.06118780188171513 TFDGHGVFF 9 Unmodified _TFDGHGVFF_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.735595703125 2 513.737617 1025.46068 0.18217 9.3587E-05 -0.55222 -0.0002837 -0.37005 -0.00019011 513.7366474753513 64.484 0.32802 64.484 64.301 64.63 0 30 16 2 0 0 0 0.016184 2 36019 35915;36019 67.344 44.195 1 6410000 63781 7633 42426 43385 74511;74512 74512 -0.05103074653652584 TFDGHGVFF 9 Unmodified _TFDGHGVFF_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.738037109375 2 513.737617 1025.46068 0.32914 0.00016909 0.47317 0.00024309 0.80232 0.00041218 513.73777124805 64.944 0.58176 64.46 64.209 64.791 -0.48428 95 26 5 0 0 0 0.0083087 3 35461 35354;35461;35583 97.075 54.98 1 72419000 63782 7633 42426 43385 74513;74514;74515 74514 -0.05103074653652584 TFDGHGVFF 9 Unmodified _TFDGHGVFF_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.73779296875 2 513.737617 1025.46068 0.99997 0.00051372 0.23583 0.00012115 1.2358 0.00063488 513.7376156534829 64.508 0.36831 64.497 64.298 64.666 -0.010529 55 18 4 0 0 0 0.0086179 2 35279 35279;35388 89.427 43.882 1 14084000 63783 7633 42426 43385 74516;74517 74516 -0.05103074653652584 TFDGHGVFF 9 Unmodified _TFDGHGVFF_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7369995117188 2 513.737617 1025.46068 0.73982 0.00038007 -0.30473 -0.00015655 0.43509 0.00022352 513.7373105113008 70.089 0.75921 63.913 63.648 64.408 -6.1757 98 42 3 0 0 0 0.0077963 3 45674 45674;45804;45935 109.63 67.535 1 155460000 63784 7633 42426 43385 74518;74519;74520 74518 -0.05103074653652584 TFDGHGVFF 9 Unmodified _TFDGHGVFF_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7379150390625 2 513.737617 1025.46068 0.98983 0.00050851 2.3667 0.0012159 3.3565 0.0017244 513.7384355174378 70.973 0.3946 64.797 64.612 65.007 -6.1757 23 19 2 0 0 0 0.026094 1 46399 46399 57.471 40.358 1 20290000 63785 7633 42426 43385 74521 74521 -0.05103074653652584 TFDGLERAMQR 11 Unmodified _TFDGLERAMQR_ 0 0 0 REV__ENSG00000159086|ENST00000331923|PAXBP1 REV__ENSG00000159086|ENST00000331923|PAXBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3263549804688 2 662.327336 1322.64012 0.58756 0.00038916 -1.1879 -0.00078675 -0.6003 -0.00039759 662.3261727924453 69.814 0.38577 69.845 69.611 69.997 0.030914 60 19 4 0 0 0 0.50515 1 38323 38323 16.149 3.1066 1 11618000 + 63786 21458 42427 43386 74522 74522 -0.008295584280404 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.4467163085938 1 986.446553 985.439277 -0.16663 -0.00016437 0.76942 0.00075899 0.60279 0.00059462 986.4472291453887 70.367 0.43394 70.367 70.203 70.637 0 50 17 4 0 0 0 0.016184 2 39260 39158;39260 67.344 22.937 1 7564000 63787 2052 42428 43387 74523;74524 74524 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7285461425781 2 493.726915 985.439277 -0.052686 -2.6013E-05 1.4584 0.00072003 1.4057 0.00069402 493.72758023131837 70.392 0.5221 70.392 70.185 70.707 0 71 21 5 0 0 0 0.038285 2 39163 39163;39261 50.855 27.707 1 24957000 63788 2052 42428 43387 74525;74526 74525 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7268371582031 2 493.726915 985.439277 0.62798 0.00031005 0.15241 7.525E-05 0.78039 0.0003853 493.72707656045594 70.956 0.35064 70.479 70.308 70.659 -0.47735 35 15 3 0 0 0 0.052168 2 38793 38793;38903 44.407 29.825 1 3462900 63789 2052 42428 43387 74527;74528 74527 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.4466552734375 1 986.446553 985.439277 0.33968 0.00033508 -1.3469 -0.0013286 -1.0072 -0.00099354 986.4451428000406 70.955 0.24297 70.478 70.368 70.611 -0.47735 16 10 2 0 0 0 0.41742 1 38815 38815 11.64 2.2929 1 1088100 63790 2052 42428 43387 74529 74529 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7939453125 2 493.726915 985.439277 0.97375 0.00048077 0.052424 2.5883E-05 1.0262 0.00050665 493.727143543729 70.467 0.21311 70.502 70.379 70.592 0.035507 16 9 2 0 0 0 0.18521 1 38778 38778 16.942 6.7589 1 881660 63791 2052 42428 43387 74530 74530 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7276916503906 2 493.726915 985.439277 0.46457 0.00022937 0.64216 0.00031705 1.1067 0.00054642 493.7272724080762 78.741 0.66193 72.565 72.324 72.986 -6.1757 97 39 3 0 0 0 0.052168 3 51558 51425;51558;51693 44.407 26.326 1 47446000 63792 2052 42428 43387 74531;74532;74533 74532 -0.054025044730451555 TFDIASDAF 9 Unmodified _TFDIASDAF_ 0 0 0 ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39;ENST00000478152.1_1_2:231655619-231663633:+|nuORF ENSG00000102547|ENST00000409308|CAB39L ENSG00000102547|ENST00000409308|CAB39L MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.4461059570312 1 986.446553 985.439277 0.44046 0.00043449 -0.14581 -0.00014383 0.29465 0.00029066 986.4464957669541 78.747 0.42487 72.571 72.384 72.809 -6.1757 47 25 2 0 0 0 0.0082281 2 51603 51476;51603 92.822 32.433 1 15020000 63793 2052 42428 43387 74534;74535 74535 -0.054025044730451555 TFDKYFNQ 8 Unmodified _TFDKYFNQ_ 0 0 0 REV__nc|ENSG00000156113|Q12791-5|KCNMA1 REV__nc|ENSG00000156113|Q12791-5|KCNMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7482299804688 2 531.748182 1061.48181 0.53976 0.00028702 -3.849 -0.0020467 -3.3093 -0.0017597 531.7472191937926 59.483 0.51105 59.483 59.262 59.773 0 42 22 3 0 0 0 0.58902 1 33109 33109 26.884 0.61551 1 4158500 + 63794 21313 42429 43388 74536 74536 -0.046471093448190004 TFDLQRIGF 9 Unmodified _TFDLQRIGF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.79296875 2 548.792924 1095.57129 0.65042 0.00035695 -1.0325 -0.00056662 -0.38206 -0.00020967 548.792484837755 73.832 0.29626 73.356 73.208 73.504 -0.47588 25 14 2 0 0 0 0.020973 1 40386 40386 62.573 12.64 1 2481400 63795 16100 42430 43389 74537 74537 0.027331453345595946 TFDLQRIGF 9 Unmodified _TFDLQRIGF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7928466796875 2 548.792924 1095.57129 0.21476 0.00011786 2.0734 0.0011379 2.2882 0.0012557 548.7945821007033 73.304 0.54105 73.346 73.068 73.609 0.041725 31 24 2 0 0 0 0.011671 1 40355 40355 75.761 17.082 1 25180000 63796 16100 42430 43389 74538 74538 0.027331453345595946 TFDLQRIGF 9 Unmodified _TFDLQRIGF_ 0 0 0 nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 nc|ENSG00000104723|Q13454-2|TUSC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7944946289062 2 548.792924 1095.57129 0.97717 0.00053626 0.75245 0.00041294 1.7296 0.00094921 548.7929058356407 87.358 1.0601 81.182 80.379 81.439 -6.1757 82 57 2 0 0 0 0.0087807 2 57540 57540;57666 106.94 17.986 1 23360000 63797 16100 42430 43389 74539;74540 74539 0.027331453345595946 TFDLTVVSY 9 Unmodified _TFDLTVVSY_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7660522460938 2 522.76604 1043.51753 -0.17276 -9.0313E-05 0.35627 0.00018625 0.18351 9.5934E-05 522.7657452729832 76.657 0.4157 76.177 76.084 76.5 -0.47945 45 20 3 0 0 0 0.14602 2 41999 41999;42102 28.487 11.545 1 3917700 63798 4107 42431 43390 74541;74542 74541 -0.0024907188781071454 TFDLTVVSY 9 Unmodified _TFDLTVVSY_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7665405273438 2 522.76604 1043.51753 0.50546 0.00026424 -0.67994 -0.00035545 -0.17449 -9.1215E-05 522.7655440329503 84.505 0.44386 78.33 78.088 78.532 -6.1757 56 25 3 0 0 0 0.026094 2 55535 55535;55671 57.471 35.725 1 35606000 63799 4107 42431 43390 74543;74544 74543 -0.0024907188781071454 TFDLTVVSY 9 Unmodified _TFDLTVVSY_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1044.401733398438 1 1044.5248 1043.51753 0.23604 0.00024655 -2.9831 -0.0031159 -2.747 -0.0028693 1044.5198661040945 84.476 0.24181 78.3 78.172 78.414 -6.1757 19 13 2 0 0 0 0.016828 1 55500 55500 88.904 40.558 1 8527800 63800 4107 42431 43390 74545 74545 -0.0024907188781071454 TFDNEIVMM 9 2 Oxidation (M) _TFDNEIVM(Oxidation (M))M(Oxidation (M))_ TFDNEIVM(1)M(1) TFDNEIVM(61)M(61) 0 0 2 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2393188476562 2 566.238475 1130.4624 1.0129 0.00057354 -0.96641 -0.00054722 0.046491 2.6325E-05 566.2384005342975 42.663 0.66802 42.663 42.26 42.928 0 81 33 4 0 0 0 0.022193 2 23245 23120;23245 61.357 51.284 1 10873000 63801 1692 42432 43391 74546;74547 74547 289;290 -0.09761569742227039 TFDNGIVFG 9 Unmodified _TFDNGIVFG_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 971.4771118164062 1 969.467623 968.460347 0.36507 0.00035392 1.1631 0.0011276 1.5282 0.0014815 969.4682442595931 68.417 0.31145 67.937 67.764 68.076 -0.48071 33 13 3 0 0 0 0.58865 1 37369 37369 2.0598 0 1 5128900 + 63802 21951 42433 43392 74548 74548 -0.02514494373508569 TFDNVTSYL 9 Unmodified _TFDNVTSYL_ 0 0 0 nc|ENSG00000160193|P57081-3|WDR4;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4 nc|ENSG00000160193|P57081-3|WDR4 nc|ENSG00000160193|P57081-3|WDR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.25390625 2 530.253297 1058.49204 0.27912 0.00014801 -0.32392 -0.00017176 -0.044799 -2.3755E-05 530.2529040405243 69.985 0.22816 69.985 69.797 70.025 0 41 27 2 0 0 0 0.1773 1 38939 38939 25.399 13.759 1 4358700 63803 6693 42434 43393 74549 74549 -0.03486546410226765 TFDNVTSYL 9 Unmodified _TFDNVTSYL_ 0 0 0 nc|ENSG00000160193|P57081-3|WDR4;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4 nc|ENSG00000160193|P57081-3|WDR4 nc|ENSG00000160193|P57081-3|WDR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.253173828125 2 530.253297 1058.49204 0.17659 9.3637E-05 -1.3381 -0.00070952 -1.1615 -0.00061588 530.2522645551397 70.543 0.37983 70.065 69.845 70.225 -0.47736 47 34 2 0 0 0 0.05447 1 38540 38540 43.858 28.011 1 6544500 63804 6693 42434 43393 74550 74550 -0.03486546410226765 TFDNVTSYL 9 Unmodified _TFDNVTSYL_ 0 0 0 nc|ENSG00000160193|P57081-3|WDR4;nc|ENSG00000160193|P57081-2|WDR4;ENSG00000160193|ENST00000398208|WDR4 nc|ENSG00000160193|P57081-3|WDR4 nc|ENSG00000160193|P57081-3|WDR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2537231445312 2 530.253297 1058.49204 0.42086 0.00022316 1.4273 0.00075686 1.8482 0.00098002 530.2541250619438 78.721 0.43056 72.545 72.356 72.787 -6.1757 58 26 3 0 0 0 0.05447 2 51629 51499;51629 43.858 22.112 1 36254000 63805 6693 42434 43393 74551;74552 74552 -0.03486546410226765 TFDPAFYEF 9 Unmodified _TFDPAFYEF_ 0 0 0 REV__nc|ENSG00000171720|O15379-2|HDAC3 REV__nc|ENSG00000171720|O15379-2|HDAC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5022888183594 3 379.502686 1135.48623 NaN NaN NaN NaN NaN NaN NaN 52.568 1 52.568 52.068 53.068 0 0 0 0 0.75456 1 29097 29097 7.609 2.3121 1 + 63806 29778 42435 43394 74553 74553 -0.07609644921899417 TFDPHTEFL 9 Unmodified _TFDPHTEFL_ 0 0 0 ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6 ENST00000521195.1_1_8:104320096-104343734:+|nuORF ENST00000521195.1_1_8:104320096-104343734:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7611083984375 2 553.761289 1105.50803 0.46556 0.00025781 1.0464 0.00057948 1.512 0.00083729 553.7621037768346 58.902 0.23048 58.411 58.348 58.579 -0.49079 16 10 2 0 0 0 0.2001 1 32044 32044 23.148 14.555 1 1050700 63807 7264 42436 43395 74554 74554 -0.04050840173317738 TFDPHTEFL 9 Unmodified _TFDPHTEFL_ 0 0 0 ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6 ENST00000521195.1_1_8:104320096-104343734:+|nuORF ENST00000521195.1_1_8:104320096-104343734:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 553.761289 1105.50803 0.53283 0.00029506 0.50559 0.00027998 1.0384 0.00057504 553.7615132130433 58.427 0.32141 58.427 58.262 58.583 0 0.0083451 -0.00018195 NaN 23.148 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4475300 63808 7264 42436 43395 -0.04050840173317738 TFDPSVVW 8 Unmodified _TFDPSVVW_ 0 0 0 REV__ENSG00000164199|ENST00000405460|ADGRV1 REV__ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2560119628906 2 475.734543 949.454533 NaN NaN NaN NaN NaN NaN NaN 58.339 1 58.278 57.778 58.778 -0.060719 0 0 0 0.97444 1 31770 31770 2.8892 0 1 + 63809 21892 42437 43396 74555 74555 -0.0222159288517787 TFDPVTKVL 9 Unmodified _TFDPVTKVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2921447753906 2 510.292225 1018.5699 NaN NaN NaN NaN NaN NaN NaN 59.107 1 59.107 58.607 59.607 0 0 0 0 0.56093 1 32925 32925 13.906 2.2658 1 63810 9317 42438 43397 74556 74556 0.061355112458159056 TFDPVTKVL 9 Unmodified _TFDPVTKVL_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2924499511719 2 510.292225 1018.5699 0.10808 5.5154E-05 0.1899 9.6903E-05 0.29798 0.00015206 510.2923840032566 59.585 0.2885 59.094 58.946 59.234 -0.49079 27 13 3 0 0 0 0.11784 1 32395 32395 31.268 5.869 1 4107100 63811 9317 42438 43397 74557 74557 0.061355112458159056 TFDSEVAPSF 10 Unmodified _TFDSEVAPSF_ 0 0 0 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MSMS AL20221201_MKP_PDAC_01 4 550.2874755859375 2 550.250754 1098.48696 NaN NaN NaN NaN NaN NaN NaN 100.57 1 94.396 93.896 94.896 -6.1757 0 0 0 0.61917 1 67282 67282 20.454 3.5113 1 63812 1648 42439 43398 74558 74558 -0.0583485027284496 TFDSPARL 8 Unmodified _TFDSPARL_ 0 0 0 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 ENSG00000140961|ENST00000393306|OSGIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7385864257812 2 453.737617 905.460681 0.70238 0.0003187 0.94581 0.00042915 1.6482 0.00074785 453.7378086410254 43.874 0.34022 39.109 38.919 39.259 -4.7648 39 21 2 0 0 0 0.40602 1 26642 26642 43.858 11.073 1 10670000 63813 5288 42440 43399 74559 74559 0.004169253463260247 TFDSSGAFL 9 Unmodified _TFDSSGAFL_ 0 0 0 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 nc|ENSG00000204120|Q6Y7W6-4|GIGYF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 944.436767578125 1 944.435989 943.428712 -0.21126 -0.00019952 0.80801 0.00076311 0.59675 0.0005636 944.4365985734116 63.579 0.22664 63.579 63.482 63.709 0 16 9 2 0 0 0 0.49272 1 35440 35440 7.9102 0 1 1232200 63814 10242 42441 43400 74560 74560 -0.04526487127452583 TFDSTIHF 8 Unmodified _TFDSTIHF_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2296142578125 2 484.229625 966.444697 -0.51332 -0.00024856 0.85998 0.00041643 0.34666 0.00016786 484.2299352121976 55.42 0.34919 55.42 55.262 55.611 0 48 15 4 0 0 0 0.24071 2 30742 30742;30847 63.563 23.114 1 17401000 63815 5110;2983 42442 43401 74561;74562 74561 -0.03986780890556929 TFDSTIHF 8 Unmodified _TFDSTIHF_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.229248046875 2 484.229625 966.444697 -0.25193 -0.00012199 -0.93646 -0.00045346 -1.1884 -0.00057545 484.22902183862686 55.998 0.3015 55.52 55.36 55.661 -0.47798 37 14 4 0 0 0 0.46494 1 30354 30354 38.151 6.0342 1 15478000 63816 5110;2983 42442 43401 74563 74563 -0.03986780890556929 TFDSTIHF 8 Unmodified _TFDSTIHF_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2304077148438 2 484.229625 966.444697 0.60099 0.00029102 1.3018 0.00063039 1.9028 0.00092141 484.2301027801752 61.988 0.44624 55.812 55.537 55.984 -6.1757 54 24 3 0 0 0 0.31612 2 40013 39888;40013 53.576 21.459 1 59646000 63817 5110;2983 42442 43401 74564;74565 74565 -0.03986780890556929 TFDTTFSHF 9 Unmodified _TFDTTFSHF_ 0 0 0 nc|ENSG00000144852|O75469-5|NR1I2;nc|ENSG00000144852|O75469-2|NR1I2;nc|ENSG00000144852|O75469-4|NR1I2;nc|ENSG00000144852|O75469-6|NR1I2;ENSG00000144852|ENST00000393716|NR1I2;nc|ENSG00000144852|O75469-3|NR1I2;nc|ENSG00000144852|O75469-7|NR1I2 nc|ENSG00000144852|O75469-5|NR1I2 nc|ENSG00000144852|O75469-5|NR1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7460327148438 2 551.745639 1101.47673 0.36392 0.00020079 1.2651 0.00069801 1.629 0.0008988 551.7461711957935 58.705 0.40726 58.214 57.921 58.329 -0.49079 39 19 3 0 0 0 0.019303 1 31892 31892 64.236 42.49 1 6019700 63818 5653 42443 43402 74566 74566 -0.06995413207414458 TFDTTFSHF 9 Unmodified _TFDTTFSHF_ 0 0 0 nc|ENSG00000144852|O75469-5|NR1I2;nc|ENSG00000144852|O75469-2|NR1I2;nc|ENSG00000144852|O75469-4|NR1I2;nc|ENSG00000144852|O75469-6|NR1I2;ENSG00000144852|ENST00000393716|NR1I2;nc|ENSG00000144852|O75469-3|NR1I2;nc|ENSG00000144852|O75469-7|NR1I2 nc|ENSG00000144852|O75469-5|NR1I2 nc|ENSG00000144852|O75469-5|NR1I2 MSMS AL20221201_MKP_PDAC_01 4 551.7462768554688 2 551.745639 1101.47673 NaN NaN NaN NaN NaN NaN NaN 64.772 1 58.596 58.096 59.096 -6.1757 0 0 0 0.0056782 1 41993 41993 125.62 77.279 1 63819 5653 42443 43402 74567 74567 -0.06995413207414458 TFDVAPSRL 9 Unmodified _TFDVAPSRL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2718200683594 2 503.271824 1004.5291 0.21447 0.00010793 -0.41404 -0.00020838 -0.19958 -0.00010044 503.27158620734764 48.304 0.39953 48.304 48.092 48.491 0 36 19 2 0 0 0 0.05483 1 26481 26481 43.772 16.144 1 61592000 63820 2113 42444 43403 74568 74568 0.027011699261947797 TFDVAPSRL 9 Unmodified _TFDVAPSRL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2717895507812 2 503.271824 1004.5291 -0.048947 -2.4634E-05 -0.22501 -0.00011324 -0.27395 -0.00013787 503.2717243513672 48.563 0.52056 48.191 47.849 48.369 -0.37172 46 27 2 0 0 0 0.05483 1 26068 26068 43.772 16.144 1 79914000 63821 2113 42444 43403 74569 74569 0.027011699261947797 TFDVAPSRL 9 Unmodified _TFDVAPSRL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2721557617188 2 503.271824 1004.5291 0.4252 0.00021399 -0.33691 -0.00016956 0.088284 4.4431E-05 503.271570441272 48.262 0.2233 48.224 48.102 48.326 -0.038647 17 10 2 0 0 0 0.014417 1 26008 26008 69.105 34.703 1 2248500 63822 2113 42444 43403 74570 74570 0.027011699261947797 TFDVAPSRL 9 Unmodified _TFDVAPSRL_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2714233398438 2 503.271824 1004.5291 1.2305 0.00061928 1.1274 0.00056741 2.358 0.0011867 503.2717239342043 54.343 0.89066 48.478 47.838 48.729 -5.8653 138 54 4 0 0 0 0.023481 3 34630 34340;34480;34630 60.074 27.288 1 326760000 63823 2113 42444 43403 74571;74572;74573 74573 0.027011699261947797 TFDVAPSRLDF 11 Unmodified _TFDVAPSRLDF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3221435546875 2 634.319502 1266.62445 0.025417 1.6122E-05 0.09976 6.328E-05 0.12518 7.9402E-05 634.3196130461184 67.077 0.31682 66.594 66.398 66.715 -0.48323 44 14 4 0 0 0 0.0094206 2 36588 36588;36693 83.429 52.16 1 15340000 63824 2113 42445 43404 74574;74575 74574 0.0018047832656975515 TFDVAPSRLDF 11 Unmodified _TFDVAPSRLDF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.318359375 2 634.319502 1266.62445 0.63472 0.00040261 1.0303 0.00065356 1.6651 0.0010562 634.82094431054 75.495 0.70763 69.32 69.009 69.717 -6.1757 62 37 2 0 0 0 0.014383 2 49488 49488;49616 74.772 40.37 1 15507000 63825 2113 42445 43404 74576;74577 74576 0.0018047832656975515 TFDVSLLTI 9 Unmodified _TFDVSLLTI_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7835693359375 2 504.784233 1007.55391 NaN NaN NaN NaN NaN NaN NaN 97.262 1 97.262 96.762 97.762 0 0 0 0 0.46757 1 53743 53743 16.942 0 1 63826 673 42446 43405 74578 74578 0.050438050089155695 TFDVSLLTI 9 Unmodified _TFDVSLLTI_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7832946777344 2 504.784233 1007.55391 -0.08019 -4.0479E-05 -0.98335 -0.00049638 -1.0635 -0.00053686 504.7836556567883 97.66 0.34102 97.418 97.22 97.561 -0.24277 35 15 3 0 0 0 0.016184 2 53385 53271;53385 67.344 0 1 19373000 63827 673 42446 43405 74579;74580 74580 0.050438050089155695 TFDVSLLTI 9 Unmodified _TFDVSLLTI_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1008.202392578125 1 1008.56119 1007.55391 0.25154 0.00025369 -1.2952 -0.0013063 -1.0437 -0.0010526 1008.5600307286978 97.649 0.22516 97.406 97.268 97.493 -0.24277 18 10 2 0 0 0 0.00856 1 53280 53280 100.37 0 1 6230000 63828 673 42446 43405 74581 74581 0.050438050089155695 TFDVSLLTI 9 Unmodified _TFDVSLLTI_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7845153808594 2 504.784233 1007.55391 0.54781 0.00027653 0.13098 6.6116E-05 0.67879 0.00034264 504.78429020773797 100.59 0.19138 94.418 94.312 94.503 -6.1757 38 12 4 0 0 0 0.0090851 1 67265 67265 85.357 0 1 445950000 63829 673 42446 43405 74582 74582 0.050438050089155695 TFDVSLLTI 9 Unmodified _TFDVSLLTI_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5;ENST00000442006.2_1_1:39174637-39175513:+|nuORF ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1008.469543457031 1 1008.56119 1007.55391 0.37416 0.00037736 -0.083385 -8.4099E-05 0.29078 0.00029326 1008.5609663929447 100.6 0.15878 94.425 94.33 94.488 -6.1757 33 10 4 0 0 0 0.18882 1 67228 67228 6.7232 0 1 425770000 63830 673 42446 43405 74583 74583 0.050438050089155695 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.5045776367188 1 948.503674 947.496398 -0.66741 -0.00063304 0.73835 0.00070033 0.070938 6.7285E-05 948.5042691463916 71.618 0.44169 71.618 71.442 71.883 0 35 19 2 0 0 0 0.013323 2 39928 39828;39928 71.134 13.662 1 1892800 63831 3844 42447 43406 74584;74585 74585 0.020549628033450063 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7550048828125 2 474.755475 947.496398 -0.027135 -1.2883E-05 -0.05086 -2.4146E-05 -0.077995 -3.7029E-05 474.75542542663914 71.625 0.35487 71.625 71.442 71.796 0 28 15 2 0 0 0 0.026094 2 39850 39850;39951 57.471 13.064 1 2944300 63832 3844 42447 43406 74586;74587 74586 0.020549628033450063 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 948.5065307617188 1 948.503674 947.496398 0.49312 0.00046772 -0.33656 -0.00031923 0.15655 0.00014849 948.5029880736314 72.066 0.26083 71.59 71.469 71.73 -0.47609 18 10 2 0 0 0 0.06187 1 39409 39409 42.095 11.87 1 1250900 63833 3844 42447 43406 74588 74588 0.020549628033450063 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.7554626464844 2 474.755475 947.496398 0.6841 0.00032478 -0.42392 -0.00020126 0.26018 0.00012352 474.7551506101296 72.058 0.3111 71.582 71.441 71.752 -0.47609 22 12 2 0 0 0 0.095405 1 39431 39431 34.102 10.954 1 1954800 63834 3844 42447 43406 74589 74589 0.020549628033450063 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7558898925781 2 474.755475 947.496398 1.1941 0.0005669 0.3946 0.00018734 1.5887 0.00075424 474.75524892994855 79.736 0.47133 73.56 73.387 73.858 -6.1757 58 28 3 0 0 0 0.0090851 2 52410 52268;52410 85.357 24.967 1 24139000 63835 3844 42447 43406 74590;74591 74591 0.020549628033450063 TFDVSPAVL 9 Unmodified _TFDVSPAVL_ 0 0 0 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 ENSG00000125378|ENST00000245451|BMP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 948.5072631835938 1 948.503674 947.496398 0.75544 0.00071654 1.2141 0.0011516 1.9696 0.0018681 948.5040259517386 79.808 0.2942 73.632 73.482 73.777 -6.1757 24 17 2 0 0 0 0.0088975 2 52404 52274;52404 104.8 26.815 1 15429000 63836 3844 42447 43406 74592;74593 74593 0.020549628033450063 TFDWGCAVQQI 11 Unmodified _TFDWGCAVQQI_ 0 0 0 REV__ENST00000533328.5_1_11:18022099-18029575:-|nuORF REV__ENST00000533328.5_1_11:18022099-18029575:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.2919921875 2 634.29243 1266.57031 0.32386 0.00020542 0.011685 7.4118E-06 0.33554 0.00021283 634.2927331695128 62.067 0.7066 55.891 55.576 56.283 -6.1757 91 39 3 0 0 0 0.28407 1 40294 40294 27.629 0 1 36087000 + 63837 19653 42448 43407 74594 74594 -0.0523143709665419 TFDWGVLIS 9 Unmodified _TFDWGVLIS_ 0 0 0 REV__ENST00000597406.1_1_19:49348605-49348773:-|nuORF REV__ENST00000597406.1_1_19:49348605-49348773:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.26904296875 2 519.26875 1036.52295 0.28513 0.00014806 0.31807 0.00016516 0.6032 0.00031322 519.2689069585816 65.517 0.34731 65.517 65.37 65.718 0 38 13 4 0 0 0 0.095405 1 36548 36548 34.102 9.4286 1 6106000 + 63838 29227 42449 43408 74595 74595 0.006146516946728298 TFDWGVLIS 9 Unmodified _TFDWGVLIS_ 0 0 0 REV__ENST00000597406.1_1_19:49348605-49348773:-|nuORF REV__ENST00000597406.1_1_19:49348605-49348773:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.26875 1036.52295 0.28513 0.00014806 0.31807 0.00016516 0.6032 0.00031322 519.2689069585816 65.517 0.34731 65.517 65.37 65.718 0 -0.017435 4.6126E-05 NaN 34.102 38 13 4 NaN NaN NaN NaN 0 NaN NaN 0 6106000 + 63839 29227 42449 43408 0.006146516946728298 TFDYQQAFGN 10 Unmodified _TFDYQQAFGN_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.7593383789062 2 595.759278 1189.504 -0.10713 -6.3827E-05 -0.1178 -7.0182E-05 -0.22494 -0.00013401 595.7589411373801 33.409 0.22897 33.438 33.274 33.503 0.028934 22 9 3 0 0 0 0.64628 1 17538 17538 8.7454 1.1365 1 2610400 63840 10662 42450 43409 74596 74596 -0.08316929667034856 TFEAKIHHL 9 Unmodified _TFEAKIHHL_ 0 0 0 ENST00000381168.7_1_11:2187868-2190906:-|nuORF;nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH;ENST00000469226.1_1_11:2189094-2189913:-|nuORF ENST00000381168.7_1_11:2187868-2190906:-|nuORF ENST00000381168.7_1_11:2187868-2190906:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.303466796875 2 548.300916 1094.58728 0.24166 0.0001325 -0.79711 -0.00043705 -0.55545 -0.00030455 548.3002659722239 63.486 0.5043 63 62.75 63.254 -0.48617 89 22 6 0 0 0 0.30562 1 34666 34666 16.942 2.104 1 32053000 63841 8886 42451 43410 74597 74597 0.0437685157148735 TFEDVAVHL 9 Unmodified _TFEDVAVHL_ 0 0 0 nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000467680.5_1_7:99159903-99161679:+|nuORF nc|ENSG00000197343|Q8N720-2|ZNF655 nc|ENSG00000197343|Q8N720-2|ZNF655 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7635498046875 2 515.763832 1029.51311 0.40093 0.00020679 -0.98998 -0.0005106 -0.58905 -0.00030381 515.7632860180647 59.317 0.29992 59.317 59.123 59.423 0 33 12 3 0 0 0 0.023164 2 33013 32990;33013 60.39 33.506 1 15153000 63842 16485 42452 43411 74598;74599 74599 -0.00046536310719602625 TFEDVAVHL 9 Unmodified _TFEDVAVHL_ 0 0 0 nc|ENSG00000197343|Q8N720-2|ZNF655;ENST00000467680.5_1_7:99159903-99161679:+|nuORF nc|ENSG00000197343|Q8N720-2|ZNF655 nc|ENSG00000197343|Q8N720-2|ZNF655 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2650756835938 2 515.763832 1029.51311 0.19081 9.8413E-05 -0.14396 -7.425E-05 0.046849 2.4163E-05 515.7638093975687 59.833 0.25702 59.342 59.214 59.471 -0.49079 20 12 3 0 0 0 0.03327 1 32568 32568 53.576 34.137 1 4170300 63843 16485 42452 43411 74600 74600 -0.00046536310719602625 TFEELHFEI 9 Unmodified _TFEELHFEI_ 0 0 0 nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;nc|ENSG00000064012|Q14790-3|CASP8 nc|ENSG00000064012|Q14790-2|CASP8 nc|ENSG00000064012|Q14790-2|CASP8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7830810546875 2 582.782222 1163.54989 NaN NaN NaN NaN NaN NaN NaN 76.903 1 76.423 75.923 76.923 -0.47945 0 0 0 0.75456 1 42104 42104 11.64 4.3511 1 63844 867 42453 43412 74601 74601 -0.025342844847955348 TFEKTPVEV 9 Unmodified _TFEKTPVEV_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.280517578125 2 525.279315 1048.54408 0.75719 0.00039773 1.633 0.00085776 2.3901 0.0012555 525.2802694719389 38.942 0.28082 38.942 38.834 39.115 0 29 12 3 0 0 0 0.0082981 1 20864 20864 96.936 31.701 1 3865800 63845 16412 42454 43413 74602 74602 0.021746170035157775 TFEKTPVEV 9 Unmodified _TFEKTPVEV_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MSMS AL20221201_MKP_PDAC_01 4 524.8160400390625 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 44.682 1 39.83 39.33 40.33 -4.852 0 0 0 0.18978 1 27306 27306 32.037 14.925 1 63846 16412 42454 43413 74603 74603 0.021746170035157775 TFELSPDYCP 10 Unmodified _TFELSPDYCP_ 0 0 0 ENST00000367139.7_1_1:205739332-205739401:-|nuORF ENST00000367139.7_1_1:205739332-205739401:-|nuORF ENST00000367139.7_1_1:205739332-205739401:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1708068847656 3 391.170719 1170.49033 0.50705 0.00019834 -0.49815 -0.00019486 0.0088966 3.4801E-06 391.17037668750635 63.865 0.42049 63.38 63.234 63.654 -0.48512 50 22 3 0 0 0 0.69377 1 34920 34920 1.7423 0 1 8368200 63847 12223 42455 43414 74604 74604 -0.08809923490503024 TFELVEKF 8 Unmodified _TFELVEKF_ 0 0 0 ENSG00000077616|ENST00000534061|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2016296386719 2 506.771126 1011.5277 -0.49371 -0.0002502 2.2656 0.0011481 1.7718 0.00089792 506.77253339352495 78.498 0.32275 78.012 77.942 78.265 -0.48596 19 13 3 0 0 0 8.7369 1 43131 43131 5.7604 0.52976 1 581800 63848 1223 42456 43415 74605 74605 0.022395358374296848 TFFEKAEPNE 10 Unmodified _TFFEKAEPNE_ 0 0 0 REV__nc|ENSG00000204334|A1L162|ERICH2 REV__nc|ENSG00000204334|A1L162|ERICH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2823486328125 2 606.282586 1210.55062 NaN NaN NaN NaN NaN NaN NaN 22.124 1 22.124 21.624 22.624 0 0 0 0 0.97302 1 11242 11242 3.5965 0.31518 1 + 63849 24160 42457 43416 74606 74606 -0.04623489835785222 TFGLVLGVVR 10 Unmodified _TFGLVLGVVR_ 0 0 0 REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8292236328125 2 530.829309 1059.64407 0.23967 0.00012722 0.074585 3.9592E-05 0.31425 0.00016681 530.8292362040863 75.159 0.59559 75.205 74.94 75.535 0.045959 49 28 2 0 0 0 0.56348 1 41499 41499 13.042 0 1 7673800 + 63850 29119 42458 43417 74607 74607 0.11662899127986748 TFGMYTSNECF 11 Unmodified _TFGMYTSNECF_ 0 0 0 REV__ENSG00000144820|ENST00000273352|ADGRG7 REV__ENSG00000144820|ENST00000273352|ADGRG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8389282226562 3 433.838863 1298.49476 NaN NaN NaN NaN NaN NaN NaN 40.89 1 40.89 40.39 41.39 0 0 0 0 0.93613 1 22011 22011 2.4348 0.52841 1 + 63851 20737 42459 43418 74608 74608 -0.14254782339230587 TFGSAACSL 9 Carbamidomethyl (C) _TFGSAAC(Carbamidomethyl (C))SL_ TFGSAAC(1)SL TFGSAAC(71)SL 0 1 0 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 REV__nc|ENSG00000211946|A0A0C4DH32|IGHV3-20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 913.4088134765625 1 913.408394 912.401117 0.74421 0.00067977 0.24154 0.00022063 0.98575 0.0009004 913.4090535256423 101.16 0.12507 94.983 94.907 95.032 -6.1757 11 7 2 0 0 0 0.013323 1 67835 67835 71.134 14.957 1 28587000 + 63852 29935 42460 43419 74609 74609 1065 -0.05858713659347359 TFGTDFSSF 9 Unmodified _TFGTDFSSF_ 0 0 0 REV__nc|ENSG00000105993|O75190-4|DNAJB6;REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7197265625 2 504.71909 1007.42363 0.048353 2.4405E-05 0.75403 0.00038057 0.80238 0.00040498 504.71947013651146 71.341 0.46075 70.863 70.636 71.097 -0.47736 58 19 4 0 0 0 0.087258 1 39102 39102 36.044 0 1 16363000 + 63853 28380;29552 42461 43420 74610 74610 -0.07978790990080142 TFGTDFSSF 9 Unmodified _TFGTDFSSF_ 0 0 0 REV__nc|ENSG00000105993|O75190-4|DNAJB6;REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF REV__ENST00000526843.2_1_11:127810983-127811547:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.7189331054688 2 504.71909 1007.42363 1.3095 0.00066095 0.33349 0.00016832 1.643 0.00082927 504.7191652729819 79.212 0.70712 73.036 72.68 73.387 -6.1757 108 39 4 0 0 0 0.047196 1 51761 51761 46.021 6.0636 1 102580000 + 63854 28380;29552 42461 43420 74611 74611 -0.07978790990080142 TFHALPSHF 9 Unmodified _TFHALPSHF_ 0 0 0 nc|ENSG00000171456|Q8IXJ9-2|ASXL1;ENSG00000171456|ENST00000375687|ASXL1 nc|ENSG00000171456|Q8IXJ9-2|ASXL1 nc|ENSG00000171456|Q8IXJ9-2|ASXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8474731445312 3 352.846898 1055.51886 1.9628 0.00069257 -0.47637 -0.00016808 1.4864 0.00052449 352.846863542202 47.86 0.38783 42.626 42.386 42.774 -5.2339 36 23 2 0 0 0 0.031062 1 29727 29727 57.722 41.156 1 9353200 63855 8101 42462 43421 74612 74612 -0.006673930083934465 TFHDHALMIIF 11 Unmodified _TFHDHALMIIF_ 0 0 0 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 ENSG00000198712|ENST00000361739|MT-CO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.8972778320312 3 448.897152 1343.66963 0.50595 0.00022712 0.18409 8.2637E-05 0.69003 0.00030975 448.8970948381538 77.207 0.28844 77.257 77.084 77.372 0.05011 25 11 3 0 0 0 0.42108 1 42622 42622 16.275 14.532 1 2779700 63856 10128 42463 43422 74613 74613 0.011540055881141598 TFHDIIYK 8 Unmodified _TFHDIIYK_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7786865234375 2 518.776742 1035.53893 0.54415 0.00028229 0.7424 0.00038514 1.2866 0.00066743 518.7771681511705 52.108 0.6189 46.373 46.107 46.726 -5.7345 86 39 3 0 0 0 0.6895 1 33018 33018 18.135 1.1927 1 139960000 + 63857 21434 42464 43423 74614 74614 0.022583579315551106 TFHLDQTPD 9 Unmodified _TFHLDQTPD_ 0 0 0 REV__ENSG00000115183|ENST00000263635|TANC1 REV__ENSG00000115183|ENST00000263635|TANC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8143310546875 2 537.248546 1072.48254 0.24365 0.0001309 -0.38149 -0.00020496 -0.13784 -7.4056E-05 537.2480699837433 26.716 0.41133 26.745 26.59 27.002 0.028664 34 17 3 0 0 0 0.59218 1 13799 13799 1.8442 0 1 17734000 + 63858 18956 42465 43424 74615 74615 -0.05080314695760535 TFHSFFQHF 9 Unmodified _TFHSFFQHF_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8540954589844 3 399.854053 1196.54033 0.63589 0.00025426 0.041581 1.6626E-05 0.67747 0.00027089 399.8540424881846 57.891 0.45917 57.825 57.573 58.033 -0.066036 71 22 4 0 0 0 0.008678 2 31445 31445;31552 70.332 54.183 1 60498000 63859 5867;15584 42466 43425 74616;74617 74616 -0.050080079796771315 TFHSFFQHF 9 Unmodified _TFHSFFQHF_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2772827148438 2 599.277441 1196.54033 0.6751 0.00040457 0.20918 0.00012536 0.88428 0.00052993 599.2770222163787 57.869 0.25505 57.803 57.655 57.91 -0.066036 36 12 4 0 0 0 0.0059585 1 31499 31499 114.65 87.765 1 5537400 63860 5867;15584 42466 43425 74618 74618 -0.050080079796771315 TFHSFFQHF 9 Unmodified _TFHSFFQHF_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8546142578125 3 399.854053 1196.54033 1.293 0.00051701 -0.10825 -4.3282E-05 1.1848 0.00047373 399.8540567932602 89.289 0.51392 83.114 82.882 83.396 -6.1757 79 28 3 0 0 0 0.00856 3 58959 58828;58959;59082 89.401 73.252 1 46013000 63861 5867;15584 42466 43425 74619;74620;74621 74620 -0.050080079796771315 TFHSFFQHF 9 Unmodified _TFHSFFQHF_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.277587890625 2 599.277441 1196.54033 0.58501 0.00035058 0.039093 2.3428E-05 0.6241 0.00037401 599.2773708060239 89.311 0.58727 83.135 82.831 83.418 -6.1757 59 32 3 0 0 0 0.0087873 1 58947 58947 103.35 81.607 1 15785000 63862 5867;15584 42466 43425 74622 74622 -0.050080079796771315 TFHSFFQHF 9 Unmodified _TFHSFFQHF_ 0 0 0 nc|ENSG00000147601|P54274-2|TERF1;ENSG00000147601|ENST00000276603|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1;ENST00000583350.1_1_18:14377547-14378720:-|nuORF nc|ENSG00000147601|P54274-2|TERF1 MSMS AL20221201_MKP_PDAC_01 4 599.2780151367188 2 599.277441 1196.54033 NaN NaN NaN NaN NaN NaN NaN 89.484 1 83.309 82.809 83.809 -6.1757 0 0 0 0.0084204 1 59072 59072 96.111 67.029 1 63863 5867;15584 42466 43425 74623 74623 -0.050080079796771315 TFHSHCLNF 9 Carbamidomethyl (C) _TFHSHC(Carbamidomethyl (C))LNF_ TFHSHC(1)LNF TFHSHC(83)LNF 0 1 0 ENSG00000059378|ENST00000263549|PARP12;ENST00000493262.1_1_7:139741422-139754495:-|nuORF ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.75927734375 2 581.758558 1161.50256 0.71222 0.00041434 0.46278 0.00026922 1.175 0.00068357 581.7591088604375 39.609 0.36345 35.158 34.946 35.31 -4.4509 35 22 2 0 0 0 0.0094097 1 23557 23557 82.529 59.793 1 16481000 63864 814 42467 43426 74624 74624 69 -0.07172842236809629 TFIAVSFH 8 Unmodified _TFIAVSFH_ 0 0 0 REV__nc|ENSG00000120156|Q02763-3|TEK REV__nc|ENSG00000120156|Q02763-3|TEK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2456665039062 2 461.245078 920.475603 0.78491 0.00036204 0.10792 4.9776E-05 0.89283 0.00041181 461.2452727076031 50.753 0.19564 50.699 50.589 50.784 -0.053871 16 9 2 0 0 0 0.5284 1 27458 27458 32.117 0 1 1915900 + 63865 19230 42468 43427 74625 74625 0.012184172143292926 TFIPEPAE 8 Unmodified _TFIPEPAE_ 0 0 0 REV__ENSG00000099617|ENST00000215368|EFNA2 REV__ENSG00000099617|ENST00000215368|EFNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4434814453125 1 903.445825 902.438549 -0.026387 -2.384E-05 -0.68738 -0.00062101 -0.71377 -0.00064485 903.4449977660116 62.246 1.0942 62.246 61.728 62.823 0 75 57 2 0 0 0 0.31612 3 34661 34551;34661;34769 53.576 13.127 1 3251200 + 63866 17980 42469 43428 74626;74627;74628 74627 -0.016572991220982658 TFISAASKF 9 Unmodified _TFISAASKF_ 0 0 0 nc|ENSG00000162976|Q8N755-2|SLC66A3;ENSG00000162976|ENST00000295083|SLC66A3 nc|ENSG00000162976|Q8N755-2|SLC66A3 nc|ENSG00000162976|Q8N755-2|SLC66A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2627258300781 2 486.263468 970.512382 1.2802 0.00062253 0.9687 0.00047105 2.2489 0.0010936 486.2639429878407 50.472 0.30403 50.423 50.271 50.575 -0.048824 34 14 3 0 0 0 0.19361 1 27265 27265 23.79 2.2528 1 2881000 63867 6937 42470 43429 74629 74629 0.025946690402406603 TFISYSVTF 9 Unmodified _TFISYSVTF_ 0 0 0 nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 nc|ENSG00000042286|Q9BRQ8-2|AIFM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.768798828125 2 532.768583 1063.52261 1.1305 0.00060232 0.66048 0.00035188 1.791 0.0009542 532.7683059924327 89.473 0.89135 83.298 82.865 83.756 -6.1757 122 49 3 0 0 0 0.14602 1 59105 59105 28.487 10.352 1 59067000 63868 660 42471 43430 74630 74630 -0.006607680252045611 TFITKLNL 8 Unmodified _TFITKLNL_ 0 0 0 REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|48|3|sense REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|48|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7336120605469 2 475.289485 948.564418 NaN NaN NaN NaN NaN NaN NaN 54.513 1 54.513 54.013 55.013 0 0 0 0 0.93066 1 30267 30267 14.582 0 1 + 63869 29418 42472 43431 74631 74631 0.08807832453976516 TFKDVAVVF 9 Unmodified _TFKDVAVVF_ 0 0 0 ENSG00000204920|ENST00000270014|ZNF155;nc|ENSG00000204920|Q12901-2|ZNF155;ENST00000590614.5_1_19:44600547-44605100:+|nuORF;ENSG00000178386|ENST00000434772|ZNF223;ENSG00000267508|ENST00000614994|ZNF285;ENSG00000186026|ENST00000421176|ZNF284;ENSG00000159905|ENST00000587682|ZNF221;ENSG00000159915|ENST00000683810|ZNF233;ENSG00000256294|ENST00000262894|ZNF225;ENSG00000131115|ENST00000313040|ZNF227;ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant;ENSG00000124459|ENST00000269973|ZNF45;ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112;ENSG00000267680|ENST00000693561|ZNF224 ENSG00000204920|ENST00000270014|ZNF155;ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant;ENSG00000062370|ENST00000354340|ZNF112;ENSG00000267680|ENST00000693561|ZNF224 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.287353515625 2 513.286943 1024.55933 0.46336 0.00023783 0.3996 0.00020511 0.86296 0.00044295 513.2870872389028 64.604 0.34532 64.119 63.949 64.294 -0.48512 33 15 3 0 0 0 0.10247 1 35214 35214 32.786 10.049 1 3733200 63870 3787;10336;849;10868 42473 43432 74632 74632 0.04803528591378381 TFKELANEF 9 Unmodified _TFKELANEF_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7796630859375 2 549.776939 1097.53933 0.32434 0.00017832 -0.4993 -0.00027451 -0.17496 -9.6188E-05 549.7765913785838 52.561 0.77422 52.561 52.287 53.061 0 102 35 4 0 0 0 0.0024112 2 29012 29012;29124 129.77 73.595 1 202270000 63871 901 42474 43433 74633;74634 74633 -0.005542671392504417 TFKELANEF 9 Unmodified _TFKELANEF_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7774658203125 2 549.776939 1097.53933 0.34872 0.00019172 0.7723 0.00042459 1.121 0.00061631 549.7774455203946 53.086 0.74923 52.635 52.338 53.087 -0.45173 85 37 4 0 0 0 0.010301 1 28713 28713 79.596 33.575 1 39743000 63872 901 42474 43433 74635 74635 -0.005542671392504417 TFKELANEF 9 Unmodified _TFKELANEF_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.776123046875 2 549.776939 1097.53933 0.65218 0.00035855 -0.63352 -0.00034829 0.018657 1.0257E-05 549.7763056592968 52.714 0.32367 52.65 52.502 52.826 -0.063423 35 15 3 0 0 0 0.0086209 1 28552 28552 89.401 51.427 1 5848800 63873 901 42474 43433 74636 74636 -0.005542671392504417 TFKELANEF 9 Unmodified _TFKELANEF_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.77685546875 2 549.776939 1097.53933 1.2214 0.00067147 -0.81937 -0.00045047 0.40198 0.000221 549.7764404224937 59.12 0.59822 53.046 52.779 53.377 -6.0745 101 33 4 0 0 0 0.032796 2 37979 37836;37979 53.833 19.73 1 264540000 63874 901 42474 43433 74637;74638 74638 -0.005542671392504417 TFKERIQWVGD 11 Unmodified _TFKERIQWVGD_ 0 0 0 ENSG00000158887|ENST00000533357|MPZ;nc|ENSG00000158887|P25189-2|MPZ ENSG00000158887|ENST00000533357|MPZ ENSG00000158887|ENST00000533357|MPZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 689.8590698242188 2 689.859326 1377.7041 0.83155 0.00057365 -0.6333 -0.00043689 0.19825 0.00013677 689.8587030481796 54.978 0.45972 49.112 48.881 49.34 -5.866 69 28 3 0 0 0 0.46131 1 34835 34835 18.373 0 1 78469000 63875 6617 42475 43434 74639 74639 0.03035545000534512 TFKIEAYVR 9 Unmodified _TFKIEAYVR_ 0 0 0 REV__ENSG00000070886|ENST00000166244|EPHA8 REV__ENSG00000070886|ENST00000166244|EPHA8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.3152465820312 2 563.816399 1125.61824 0.96505 0.00054411 -0.45835 -0.00025842 0.5067 0.00028569 564.3168959854438 76.104 0.54259 69.928 69.48 70.023 -6.1757 41 28 2 0 0 0 0.17718 1 49811 49811 14.838 0 1 9728200 + 63876 17485 42476 43435 74640 74640 0.060460048857066795 TFKMEKLQKI 10 Unmodified _TFKMEKLQKI_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5813293457031 3 422.581053 1264.72133 0.5629 0.00023787 -1.1974 -0.00050601 -0.63454 -0.00026814 422.58060417458347 69.023 0.76739 69.054 68.546 69.314 0.030914 87 36 3 0 0 0 0.71981 1 38029 38029 0.69767 0.07084 1 4529700 + 63877 17737 42477 43436 74641 74641 0.09955749282016768 TFKQNLVVL 9 Unmodified _TFKQNLVVL_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3220825195312 2 531.321317 1060.62808 0.43732 0.00023236 0.79947 0.00042477 1.2368 0.00065713 531.321790330502 57.204 0.17339 56.714 56.622 56.795 -0.48974 10 7 2 0 0 0 0.094149 1 31108 31108 34.402 7.5181 1 1470600 + 63878 24000 42478 43437 74642 74642 0.10019192891104467 TFLDDSGSLNW 11 Unmodified _TFLDDSGSLNW_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.7874145507812 2 627.785492 1253.55643 0.95093 0.00059698 0.43226 0.00027137 1.3832 0.00086835 627.7858171304977 88.445 0.50188 82.269 82.029 82.531 -6.1757 52 27 2 0 0 0 0.0029835 3 58246 58246;58381;58514 78.728 54.707 1 27014000 63879 8706 42479 43438 74643;74644;74645 74643 -0.06020391324091179 TFLDMDHTF 9 Unmodified _TFLDMDHTF_ 0 0 0 ENST00000234668.6_1_1:85647735-85666124:-|nuORF;nc|ENSG00000097096|Q5VT97-2|SYDE2;ENSG00000097096|ENST00000341460|SYDE2 ENST00000234668.6_1_1:85647735-85666124:-|nuORF ENST00000234668.6_1_1:85647735-85666124:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2071533203125 2 563.747324 1125.4801 0.39892 0.00022489 -2.0567 -0.0011595 -1.6578 -0.00093459 564.2488981158535 50.236 0.16791 50.236 50.114 50.282 0 11 7 2 0 0 0 0.20727 1 27699 27699 7.9102 0 1 1963100 63880 1683 42480 43439 74646 74646 -0.07762486425076531 TFLLNPNRELL 11 Unmodified _TFLLNPNRELL_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 665.3801879882812 2 665.379894 1328.74524 0.39112 0.00026024 -0.53674 -0.00035714 -0.14563 -9.6897E-05 665.3792420008195 80.051 0.31346 80.109 79.905 80.218 0.057587 31 13 4 0 0 0 0.39949 1 44201 44201 21.537 3.1639 1 55437000 + 63881 17040 42481 43440 74647 74647 0.09401306040058444 TFLLNPNRELL 11 Unmodified _TFLLNPNRELL_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 665.379894 1328.74524 0.83712 0.000557 -0.39627 -0.00026367 0.44085 0.00029333 665.3794824070792 80.955 0.3103 80.463 80.251 80.561 -0.49247 0.17716 0.0001124 NaN 21.537 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2637700 + 63882 17040 42481 43440 0.09401306040058444 TFLLNPNRELL 11 Unmodified _TFLLNPNRELL_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 665.379894 1328.74524 0.39112 0.00026024 -0.53674 -0.00035714 -0.14563 -9.6897E-05 665.3792420008195 80.051 0.31346 80.109 79.905 80.218 0.057587 -0.17716 -7.4534E-05 NaN 21.537 31 13 4 NaN NaN NaN NaN 0 NaN NaN 0 55437000 + 63883 17040 42481 43440 0.09401306040058444 TFLMQIDQE 9 Unmodified _TFLMQIDQE_ 0 0 0 ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2 ENSG00000186765|ENST00000417245|FSCN2 ENSG00000186765|ENST00000417245|FSCN2 MSMS AL20221201_MKP_PDAC_01 4 562.7454833984375 2 562.768257 1123.52196 NaN NaN NaN NaN NaN NaN NaN 40.087 1 35.558 35.058 36.058 -4.5294 0 0 0 0.67877 1 23896 23896 10.074 0.6908 1 63884 9502 42482 43441 74648 74648 -0.034859307365422865 TFLMSSFTF 9 Unmodified _TFLMSSFTF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7569580078125 2 540.757161 1079.49977 1.4902 0.00080586 -2.2118 -0.001196 -0.72151 -0.00039016 540.7562955269111 100.9 0.16359 94.728 94.651 94.815 -6.1757 22 9 3 0 0 0 0.2143 1 67608 67608 21.747 5.8995 1 88569000 63885 481 42483 43442 74649 74649 -0.036801104143250996 TFLSRAVQF 9 Unmodified _TFLSRAVQF_ 0 0 0 nc|ENSG00000097033|Q9Y371-2|SH3GLB1;ENSG00000097033|ENST00000370558|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7967529296875 2 534.795466 1067.57638 0.32797 0.0001754 0.59665 0.00031909 0.92462 0.00049448 534.7953098710772 60.735 0.17052 60.691 60.594 60.765 -0.04351 20 8 3 0 0 0 0.0093064 1 33111 33111 83.429 24.75 1 5571500 63886 1681 42484 43443 74650 74650 0.045294491971844764 TFLVVAEHYF 10 Unmodified _TFLVVAEHYF_ 0 0 0 REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF REV__ENST00000487623.1_1_2:74718721-74719901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.314453125 2 613.316232 1224.61791 NaN NaN NaN NaN NaN NaN NaN 65.044 1 64.56 64.06 65.06 -0.48428 0 0 0 0.92825 1 35492 35492 6.7232 0.99131 1 + 63887 18968 42485 43444 74651 74651 0.014585851658466709 TFLWTLHSF 9 Unmodified _TFLWTLHSF_ 0 0 0 REV__ENST00000418917.6_1_3:100467678-100467726:+|nuORF REV__ENST00000418917.6_1_3:100467678-100467726:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5347595214844 3 384.53432 1150.58113 1.2909 0.00049638 0.336 0.0001292 1.6269 0.00062559 384.53440181138143 90.151 1.1727 83.975 83.598 84.771 -6.1757 190 68 4 0 0 0 0.42049 1 59672 59672 11.495 3.3392 1 92254000 + 63888 26810 42486 43445 74652 74652 0.011863333399332987 TFLYIVQSF 9 Unmodified _TFLYIVQSF_ 0 0 0 REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2 REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2998046875 2 559.30005 1116.58555 0.13873 7.7594E-05 -0.7908 -0.0004423 -0.65207 -0.0003647 559.2996625541704 69.544 0.52555 69.065 68.742 69.267 -0.47903 41 22 2 0 0 0 0.5029 1 38056 38056 7.2892 0 1 1009000 + 63889 29514 42487 43446 74653 74653 0.03191797762860915 TFMDRGFVF 9 Unmodified _TFMDRGFVF_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.26953125 2 560.268227 1118.5219 0.68609 0.0003844 0.81495 0.00045659 1.501 0.00084098 560.2691092995047 74.344 0.22059 74.388 74.279 74.499 0.043983 17 9 3 0 0 0 0.20507 1 41021 41021 22.658 9.6156 1 1397100 63890 1489 42488 43447 74654 74654 -0.03261885945880749 TFMDRGFVF 9 Unmodified _TFMDRGFVF_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2683715820312 2 560.268227 1118.5219 0.96992 0.00054342 2.6376 0.0014778 3.6076 0.0020212 560.2696796338842 92.536 0.54129 86.361 86.115 86.657 -6.1757 52 32 2 0 0 0 0.053952 2 61236 61236;61374 43.982 19.961 1 29555000 63891 1489 42488 43447 74655;74656 74655 -0.03261885945880749 TFMWGHYSL 9 Unmodified _TFMWGHYSL_ 0 0 0 REV__nc|ENSG00000110090|P50416-2|CPT1A REV__nc|ENSG00000110090|P50416-2|CPT1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 381.5142211914062 3 381.176027 1140.50625 0.61718 0.00023526 0.42384 0.00016156 1.041 0.00039681 381.1761648974048 15.374 0.19846 12.847 12.771 12.97 -2.5273 74 41 2 0 0 0 0.21367 1 7838 7838 2.7352 0.23671 1 4145100 + 63892 18692 42489 43448 74657 74657 -0.05838172462949842 TFNIYYVQSYI 11 Unmodified _TFNIYYVQSYI_ 0 0 0 REV__nc|ENSG00000158813|Q92838-9|EDA REV__nc|ENSG00000158813|Q92838-9|EDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9041748046875 3 470.902849 1409.68672 0.31429 0.000148 0.38889 0.00018313 0.70318 0.00033113 470.9030789110259 52.096 0.18974 52.037 51.917 52.107 -0.058918 14 8 2 0 0 0 0.6889 1 28235 28235 2.4348 0 1 2329800 + 63893 29729 42490 43449 74658 74658 -0.0017379532507675322 TFNLEISFYF 10 Unmodified _TFNLEISFYF_ 0 0 0 ENST00000366812.5_1_1:226334194-226334293:-|nuORF ENST00000366812.5_1_1:226334194-226334293:-|nuORF ENST00000366812.5_1_1:226334194-226334293:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.8135986328125 2 640.813522 1279.61249 NaN NaN NaN NaN NaN NaN NaN 91.134 1 90.64 90.14 91.14 -0.49457 0 0 0 0.9731 1 49819 49819 6.7232 3.7279 1 63894 12210 42491 43450 74659 74659 -0.016131384166328644 TFNPKYDTL 9 Unmodified _TFNPKYDTL_ 0 0 0 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7787475585938 2 549.776939 1097.53933 0.34872 0.00019172 0.7723 0.00042459 1.121 0.00061631 549.7774455203946 53.086 0.74923 52.635 52.338 53.087 -0.45173 85 37 4 0 0 0 0.14602 1 28608 28608 28.487 3.0875 1 39743000 63895 2762 42492 43451 74660 74660 -0.005542671392504417 TFNPPLVWF 9 Unmodified _TFNPPLVWF_ 0 0 0 ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7936401367188 2 560.794935 1119.57532 -0.095938 -5.3801E-05 -1.0762 -0.00060351 -1.1721 -0.00065731 560.7942579509096 41.85 0.24888 41.543 41.392 41.641 -0.30682 26 11 3 0 0 0 0.39863 1 22180 22180 12.532 3.1484 1 15965000 63896 12050 42493 43452 74661 74661 0.020312348282914172 TFNPPLVWF 9 Unmodified _TFNPPLVWF_ 0 0 0 ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF ENST00000352432.8_2_3:10370089-10370329:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7943115234375 2 560.794935 1119.57532 0.2063 0.00011569 -1.5475 -0.00086781 -1.3412 -0.00075211 561.2953488886432 41.607 0.17298 41.605 41.467 41.64 -0.0017929 12 7 2 0 0 0 0.43463 1 22230 22230 10.824 6.0679 1 5799700 63897 12050 42493 43452 74662 74662 0.020312348282914172 TFNSRWRF 8 Unmodified _TFNSRWRF_ 0 0 0 REV__ENSG00000185219|ENST00000396077|ZNF445 REV__ENSG00000185219|ENST00000396077|ZNF445 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.282470703125 2 557.283057 1112.55156 0.4363 0.00024314 1.031 0.00057457 1.4673 0.00081771 557.2837384391031 90.816 0.48104 90.816 90.513 90.994 0 32 20 2 0 0 0 0.80311 1 50156 50156 4.756 0 1 944870 + 63898 23483 42494 43453 74663 74663 -0.00021185885543673066 TFNVAVDEFA 10 Unmodified _TFNVAVDEFA_ 0 0 0 REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7659912109375 2 556.766571 1111.51859 0.45467 0.00025315 2.3492 0.0013079 2.8038 0.0015611 556.768279750696 66.757 0.3081 66.274 66.13 66.438 -0.48323 22 14 2 0 0 0 0.52888 1 36462 36462 14.838 0.25658 1 1500200 + 63899 23230 42495 43454 74664 74664 -0.03270857518896264 TFNVFPCYQLH 11 Unmodified _TFNVFPCYQLH_ 0 0 0 nc|ENSG00000187955|Q05707-3|COL14A1;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1 nc|ENSG00000187955|Q05707-3|COL14A1 nc|ENSG00000187955|Q05707-3|COL14A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.3284301757812 2 684.823898 1367.63324 -0.57192 -0.00039166 3.8205 0.0026164 3.2486 0.0022247 684.8276556209095 35.137 0.56693 35.137 34.793 35.36 0 40 29 2 0 0 0 0.27089 1 18645 18645 17.113 5.6182 1 5928000 63900 9611 42496 43455 74665 74665 -0.035868713086301796 TFPAVGFQKL 10 Unmodified _TFPAVGFQKL_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8781433105469 3 369.878087 1106.61243 0.64852 0.00023987 -0.35285 -0.00013051 0.29566 0.00010936 369.87788049444714 40.616 0.24598 40.313 40.193 40.439 -0.30304 35 11 4 0 0 0 0.67413 1 21448 21448 5.7834 0.05158 1 12247000 + 63901 21753 42497 43456 74666 74666 0.06338906374048747 TFPAVGFQKL 10 Unmodified _TFPAVGFQKL_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8789978027344 3 369.878087 1106.61243 1.1163 0.0004129 -0.079639 -2.9457E-05 1.0367 0.00038344 369.8781337374973 44.964 0.40016 40.112 39.893 40.294 -4.852 62 26 3 0 0 0 0.51153 1 27566 27566 15.739 6.7624 1 38231000 + 63902 21753 42497 43456 74667 74667 0.06338906374048747 TFPDPLTSP 9 Unmodified _TFPDPLTSP_ 0 0 0 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 977.4929809570312 1 974.482939 973.475663 0.31711 0.00030902 -0.46655 -0.00045464 -0.14944 -0.00014562 974.4824081500615 57.122 0.38346 56.636 56.479 56.862 -0.48554 46 17 4 0 0 0 0.59218 1 31056 31056 1.8442 0 1 15802000 63903 8436 42498 43457 74668 74668 -0.012136275763396043 TFPFPTIY 8 Unmodified _TFPFPTIY_ 0 0 0 ENSG00000187699|ENST00000340623|C2orf88 ENSG00000187699|ENST00000340623|C2orf88 ENSG00000187699|ENST00000340623|C2orf88 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2530822753906 2 493.255111 984.49567 0.71912 0.00035471 -3.3451 -0.00165 -2.6259 -0.0012953 493.2539740459668 101.69 0.10162 95.513 95.443 95.545 -6.1757 7 4 2 0 0 0 0.67481 1 68257 68257 19.439 1.304 1 16553000 63904 9582 42499 43458 74669 74669 0.0028016815429054986 TFPHVPLHI 9 Unmodified _TFPHVPLHI_ 0 0 0 REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.80126953125 2 530.800552 1059.58655 0.94384 0.00050099 -0.66412 -0.00035251 0.27972 0.00014848 530.8001801604289 66.604 0.34515 66.613 66.38 66.725 0.0095596 35 16 3 0 0 0 0.28047 1 36478 36478 18.135 1.1927 1 10647000 + 63905 25191 42500 43459 74670 74670 0.059140569224155115 TFPHVPLHI 9 Unmodified _TFPHVPLHI_ 0 0 0 REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.800552 1059.58655 0.94384 0.00050099 -0.66412 -0.00035251 0.27972 0.00014848 530.8001801604289 66.604 0.34515 66.613 66.38 66.725 0.0095596 0 0 NaN 18.135 35 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10647000 + 63906 25191 42500 43459 0.059140569224155115 TFQDFSHIF 9 Unmodified _TFQDFSHIF_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant;ENST00000496773.1_1_21:11039429-11058260:-|nuORF KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2686767578125 2 571.269281 1140.52401 0.64748 0.00036989 -1.4868 -0.00084937 -0.83932 -0.00047948 571.2685668300705 63.899 0.39927 63.414 63.213 63.613 -0.48512 58 21 3 0 0 0 0.1773 1 34886 34886 25.399 3.8623 1 21689000 63907 778 42501 43460 74671 74671 -0.04063133936438135 TFQIFSNIL 9 Unmodified _TFQIFSNIL_ 0 0 0 nc|ENSG00000144741|Q70HW3-3|SLC25A26;ENST00000484768.1_1_3:66312029-66419931:+|nuORF;nc|ENSG00000144741|Q70HW3-2|SLC25A26;ENSG00000144741|ENST00000354883|SLC25A26 nc|ENSG00000144741|Q70HW3-3|SLC25A26 nc|ENSG00000144741|Q70HW3-3|SLC25A26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.797119140625 2 541.797675 1081.5808 0.75991 0.00041172 -0.62141 -0.00033668 0.1385 7.504E-05 541.7974232048435 73.79 1.7766 67.614 66.678 68.454 -6.1757 147 89 2 0 0 0 0.031062 1 47835 47835 54.774 4.8406 1 21865000 63908 5639 42502 43461 74672 74672 0.04326913620070627 TFQIFSNIL 9 Unmodified _TFQIFSNIL_ 0 0 0 nc|ENSG00000144741|Q70HW3-3|SLC25A26;ENST00000484768.1_1_3:66312029-66419931:+|nuORF;nc|ENSG00000144741|Q70HW3-2|SLC25A26;ENSG00000144741|ENST00000354883|SLC25A26 nc|ENSG00000144741|Q70HW3-3|SLC25A26 nc|ENSG00000144741|Q70HW3-3|SLC25A26 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.797675 1081.5808 0.27071 0.00014667 0.44331 0.00024018 0.71402 0.00038686 541.7976392419486 67.619 0.41821 67.637 67.474 67.893 0.018028 0.011333 0.00070242 NaN 54.774 45 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9114200 63909 5639 42502 43461 0.04326913620070627 TFQMKFFYI 9 Oxidation (M) _TFQM(Oxidation (M))KFFYI_ TFQM(1)KFFYI TFQM(64)KFFYI 0 0 1 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8068237304688 2 620.807185 1239.59982 0.51977 0.00032268 -2.6854 -0.0016671 -2.1656 -0.0013444 620.806860167638 74.28 0.38242 74.324 74.137 74.52 0.043983 61 16 5 0 0 0 0.01958 1 40951 40951 63.961 45.587 1 5237300 63910 950;8438 42503 43462 74673 74673 151 -0.010398730805036394 TFQMKFFYI 9 Unmodified _TFQMKFFYI_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000067167|ENST00000262213|TRAM1;ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8092041015625 2 612.809728 1223.6049 0.9697 0.00059424 -2.5239 -0.0015466 -1.5542 -0.0009524 612.8084837129547 99.409 0.14627 93.234 93.144 93.29 -6.1757 19 9 3 0 0 0 0.01958 1 66224 66224 63.961 38.561 1 49780000 63911 950;8438 42503 43463 74674 74674 0.0020443078212792898 TFQPHCSIRC 10 Unmodified _TFQPHCSIRC_ 0 0 0 ENST00000471629.1_1_20:43353203-43355945:+|nuORF;ENSG00000064205|ENST00000190983|CCN5 ENST00000471629.1_1_20:43353203-43355945:+|nuORF ENST00000471629.1_1_20:43353203-43355945:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8515930175781 3 397.851437 1190.53248 NaN NaN NaN NaN NaN NaN NaN 38.444 1 38.444 37.944 38.944 0 0 0 0 0.99091 1 20536 20536 0.69767 0 1 63912 870 42504 43464 74675 74675 -0.05516226563122473 TFQRPYQYLRR 11 Unmodified _TFQRPYQYLRR_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.9443359375 3 509.944153 1526.81063 0.47811 0.00024381 0.099982 5.0985E-05 0.57809 0.00029479 509.9439871093294 27.879 0.1725 27.908 27.84 28.012 0.029564 18 6 4 0 0 0 0.74046 1 14501 14501 0.45452 0 1 5908100 63913 8367 42505 43465 74676 74676 0.06829720285736585 TFQYLSFYV 9 Unmodified _TFQYLSFYV_ 0 0 0 ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2 ENSG00000155903|ENST00000286364|RASA2 ENSG00000155903|ENST00000286364|RASA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2938842773438 2 584.289682 1166.56481 0.39136 0.00022867 1.2087 0.00070625 1.6001 0.00093492 584.291077176374 78.271 0.31992 72.095 71.935 72.255 -6.1757 33 18 3 0 0 0 0.10734 1 51264 51264 32.305 17.467 1 53893000 63914 6417 42506 43466 74677 74677 -0.011807926168330596 TFRPSSSIQQ 10 Unmodified _TFRPSSSIQQ_ 0 0 0 nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 nc|ENSG00000170921|Q9HCD6|TANC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.2000122070312 3 384.199889 1149.57784 0.20329 7.8103E-05 -1.1726 -0.00045053 -0.96936 -0.00037243 384.1999057309044 58.08 0.42161 58.08 57.968 58.39 0 40 16 4 0 0 0 0.69385 1 32322 32322 3.5871 0.85186 1 3188500 63915 8044 42507 43467 74678 74678 0.009030384952893655 TFRQYNCE 8 Unmodified _TFRQYNCE_ 0 0 0 REV__ENSG00000130940|ENST00000377022|CASZ1 REV__ENSG00000130940|ENST00000377022|CASZ1 MSMS AL20221201_MKP_PDAC_01 4 354.1922302246094 3 354.155403 1059.44438 NaN NaN NaN NaN NaN NaN NaN 17.096 1 14.509 14.009 15.009 -2.5866 0 0 0 0.97444 1 8910 8910 3.5965 0.0094347 1 + 63916 19754 42508 43468 74679 74679 -0.08296523882086149 TFRYYAGWADK 11 Unmodified _TFRYYAGWADK_ 0 0 0 nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2 nc|ENSG00000128918|O94788-4|ALDH1A2 nc|ENSG00000128918|O94788-4|ALDH1A2 MSMS AL20221201_MKP_PDAC_01 4 459.8900146484375 3 459.891055 1376.65134 NaN NaN NaN NaN NaN NaN NaN 46.658 1 41.578 41.078 42.078 -5.0805 0 0 0 0.86919 1 28866 28866 8.7518 1.7147 1 63917 4100 42509 43469 74680 74680 -0.021924130622437588 TFSDHDTAI 9 Unmodified _TFSDHDTAI_ 0 0 0 nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7277526855469 2 503.727446 1005.44034 0.20065 0.00010108 0.3359 0.0001692 0.53655 0.00027028 503.72758822380257 44.354 0.34219 44.354 44.19 44.532 0 38 17 3 0 0 0 0.2001 1 24205 24205 23.148 3.8914 1 41999000 63918 1610 42510 43470 74681 74681 -0.062162901041574514 TFSDVEAHF 9 Unmodified _TFSDVEAHF_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7804565429688 2 526.737814 1051.46108 0.2305 0.00012141 0.4221 0.00022233 0.65259 0.00034375 526.7380069499726 48.94 0.18974 48.568 48.464 48.654 -0.37172 16 9 2 0 0 0 0.18521 1 26297 26297 16.942 11.182 1 1484600 63919 784 42511 43471 74682 74682 -0.06259699724478196 TFSDVEAHF 9 Unmodified _TFSDVEAHF_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7376708984375 2 526.737814 1051.46108 0.98667 0.00051972 0.84003 0.00044247 1.8267 0.00096219 526.7382750907626 54.936 0.39323 49.071 48.819 49.213 -5.8653 44 24 2 0 0 0 0.012148 2 34767 34767;34898 74.423 51.274 1 28031000 63920 784 42511 43471 74683;74684 74683 -0.06259699724478196 TFSDVEAHF 9 Unmodified _TFSDVEAHF_ 0 0 0 ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C ENSG00000056277|ENST00000370978|ZNF280C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 526.737814 1051.46108 -0.2697 -0.00014206 0.073225 3.857E-05 -0.19647 -0.00010349 526.7376453196156 48.587 0.34752 48.587 48.413 48.761 0 0.0094155 -0.00017576 NaN 23.148 34 16 3 NaN NaN NaN NaN 0 NaN NaN 0 11963000 63921 784 42511 43471 -0.06259699724478196 TFSEEHPVL 9 Unmodified _TFSEEHPVL_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7610473632812 2 529.761289 1057.50803 0.51602 0.00027337 0.31047 0.00016448 0.8265 0.00043785 529.7613733211388 58.144 0.32542 58.144 57.99 58.316 0 36 12 4 0 0 0 0.28047 1 32348 32348 18.135 2.2878 1 8185400 63922 3082 42512 43472 74685 74685 -0.018428401733444844 TFSEGNVV 8 Unmodified _TFSEGNVV_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7091979980469 2 426.708525 851.402498 0.76024 0.0003244 -0.48903 -0.00020868 0.2712 0.00011572 426.7085736783781 54.33 0.37572 54.33 54.152 54.528 0 29 16 2 0 0 0 0.76266 1 30157 30157 11.64 2.2929 1 1444100 + 63923 18166 42513 43473 74686 74686 -0.02914756298946486 TFSEIINF 8 Unmodified _TFSEIINF_ 0 0 0 REV__ENSG00000172476|ENST00000304236|RAB40A REV__ENSG00000172476|ENST00000304236|RAB40A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7471008300781 2 485.74765 969.480748 -0.0063839 -3.101E-06 -1.4442 -0.00070151 -1.4506 -0.00070461 485.74726098802796 71.643 0.21076 71.643 71.523 71.734 0 12 8 2 0 0 0 0.79783 1 39937 39937 7.9102 0 1 384170 + 63924 18223 42514 43474 74687 74687 -0.00521323713712718 TFSKGCQG 8 Unmodified _TFSKGCQG_ 0 0 0 REV__ENSG00000169740|ENST00000374433|ZNF32 REV__ENSG00000169740|ENST00000374433|ZNF32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 827.3720092773438 1 827.371614 826.364338 1.2577 0.0010406 0.032419 2.6823E-05 1.2901 0.0010674 827.371737296428 91.82 0.56355 85.644 85.29 85.853 -6.1757 54 31 2 0 0 0 0.63229 3 60560 60560;60680;60796 23.148 3.7094 1 28945000 + 63925 22421 42515 43475 74688;74689;74690 74688 -0.05578965485256049 TFSPHFHHF 9 Unmodified _TFSPHFHHF_ 0 0 0 ENST00000245865.10_2_17:61781645-61782047:-|nuORF;nc|ENSG00000266173|Q7RTN6-2|STRADA;nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA ENST00000245865.10_2_17:61781645-61782047:-|nuORF ENST00000245865.10_2_17:61781645-61782047:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.1830444335938 3 386.182281 1155.52501 -0.07359 -2.8419E-05 1.1482 0.0004434 1.0746 0.00041498 386.18269890393503 33.113 0.29781 33.143 32.998 33.296 0.029743 34 12 4 0 0 0 0.19127 1 17397 17397 24.021 4.7636 1 9850500 63926 10864 42516 43476 74691 74691 -0.04652874776866156 TFSPHFHHF 9 Unmodified _TFSPHFHHF_ 0 0 0 ENST00000245865.10_2_17:61781645-61782047:-|nuORF;nc|ENSG00000266173|Q7RTN6-2|STRADA;nc|ENSG00000266173|Q7RTN6-5|STRADA;nc|ENSG00000266173|Q7RTN6-3|STRADA;ENSG00000266173|ENST00000336174|STRADA ENST00000245865.10_2_17:61781645-61782047:-|nuORF ENST00000245865.10_2_17:61781645-61782047:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 386.182281 1155.52501 -0.23947 -9.2477E-05 -0.75511 -0.00029161 -0.99458 -0.00038409 386.1819348586401 33.266 0.17055 33.107 33.052 33.223 -0.15918 -0.018065 -0.0018959 NaN 24.021 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 953860 63927 10864 42516 43476 -0.04652874776866156 TFSPHFKVFKW 11 Unmodified _TFSPHFKVFKW_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.6940002441406 4 356.693487 1422.74484 0.6032 0.00021516 -0.052341 -1.867E-05 0.55086 0.00019649 356.6935266450594 58.255 0.27581 58.194 58.077 58.353 -0.060722 34 13 4 0 0 0 0.50268 1 31732 31732 16.275 15.261 1 4441900 63928 16120 42517 43477 74692 74692 0.05037931110837235 TFSPHFKVFKW 11 Unmodified _TFSPHFKVFKW_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2560119628906 3 475.255557 1422.74484 0.66523 0.00031615 -0.28819 -0.00013697 0.37703 0.00017919 475.2554320698976 58.295 0.17834 58.234 58.116 58.294 -0.060719 19 8 3 0 0 0 0.30551 1 31770 31770 2.6312 1.4164 1 2294600 63929 16120 42517 43477 74693 74693 0.05037931110837235 TFSPNWQP 8 Unmodified _TFSPNWQP_ 0 0 0 ENST00000557990.1_3_15:91459481-91459855:+|nuORF ENST00000557990.1_3_15:91459481-91459855:+|nuORF ENST00000557990.1_3_15:91459481-91459855:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.8779296875 2 488.729792 975.445031 NaN NaN NaN NaN NaN NaN NaN 22.369 1 22.369 21.869 22.869 0 0 0 0 0.9489 1 11373 11373 10.824 2.0785 1 63930 15270 42518 43478 74694 74694 -0.04367361170716322 TFSQFNTF 8 Unmodified _TFSQFNTF_ 0 0 0 ENST00000339362.9_1_15:73597096-73597282:+|nuORF ENST00000339362.9_1_15:73597096-73597282:+|nuORF ENST00000339362.9_1_15:73597096-73597282:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2283630371094 2 496.229625 990.444697 NaN NaN NaN NaN NaN NaN NaN 67.847 1 67.847 67.347 68.347 0 0 0 0 0.9192 1 37830 37830 16.942 0 1 63931 11950 42519 43479 74695 74695 -0.05090780890577662 TFSTNYRSLGS 11 Unmodified _TFSTNYRSLGS_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.7997436523438 2 616.798934 1231.58332 -0.29234 -0.00018031 0.05085 3.1364E-05 -0.24149 -0.00014895 616.7991138058794 36.583 0.1974 36.334 36.253 36.45 -0.2497 13 8 2 0 0 0 0.4178 1 19217 19217 20.581 3.468 1 2776200 63932 2759 42520 43480 74696 74696 -0.023212827129100333 TFSTQPRPAS 10 Unmodified _TFSTQPRPAS_ 0 0 0 REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF REV__ENST00000504519.5_1_4:169552810-169602515:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2765502929688 2 546.277638 1090.54072 -0.21208 -0.00011585 -1.9494 -0.0010649 -2.1614 -0.0011807 546.2768945086756 69.458 0.50399 68.979 68.81 69.314 -0.47903 46 21 3 0 0 0 0.54684 1 38041 38041 13.906 3.0821 1 4098500 + 63933 28056 42521 43481 74697 74697 -0.0009263305048534676 TFTCGHHC 8 Unmodified _TFTCGHHC_ 0 0 0 REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8694458007812 2 453.173272 904.331992 NaN NaN NaN NaN NaN NaN NaN 73.951 1 73.951 73.451 74.451 0 0 0 0 0.97444 1 41161 41161 0.79363 0 1 + 63934 25451 42522 43482 74698 74698 -0.12400076159917717 TFTCGHHC 8 Unmodified _TFTCGHHC_ 0 0 0 REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2114868164062 2 453.173272 904.331992 NaN NaN NaN NaN NaN NaN NaN 88.664 1 88.664 88.164 89.164 0 0 0 0 0.97444 1 49072 49072 0.79363 0 1 + 63935 25451 42522 43482 74699 74699 -0.12400076159917717 TFTCGHHC 8 Unmodified _TFTCGHHC_ 0 0 0 REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF REV__ENST00000314888.9_1_9:35725635-35732201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8695373535156 2 453.173272 904.331992 NaN NaN NaN NaN NaN NaN NaN 95.919 1 95.919 95.419 96.419 0 0 0 0 0.97444 1 53012 53012 0.79363 0 1 + 63936 25451 42522 43482 74700 74700 -0.12400076159917717 TFTDHVMLF 9 Oxidation (M) _TFTDHVM(Oxidation (M))LF_ TFTDHVM(1)LF TFTDHVM(67)LF 0 0 1 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47851464-47851626:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.765380859375 2 563.765517 1125.51648 0.35436 0.00019977 0.10586 5.9678E-05 0.46021 0.00025945 563.7655049813297 65.441 0.31249 64.956 64.749 65.061 -0.48428 26 14 2 0 0 0 0.016184 1 35752 35752 67.344 46.89 1 21092000 63937 3769 42523 43483 74701 74701 665 -0.04125609528387031 TFTDHVMLF 9 Oxidation (M) _TFTDHVM(Oxidation (M))LF_ TFTDHVM(1)LF TFTDHVM(67)LF 0 0 1 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47851464-47851626:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7664184570312 2 563.765517 1125.51648 0.25208 0.00014211 1.2469 0.00070297 1.499 0.00084508 563.7661706594936 65.651 0.27548 65.167 65.061 65.337 -0.48428 21 11 2 0 0 0 0.016184 1 35864 35864 67.344 44.195 1 21215000 63938 3769 42523 43483 74702 74702 665 -0.04125609528387031 TFTDHVMLF 9 Oxidation (M) _TFTDHVM(Oxidation (M))LF_ TFTDHVM(1)LF TFTDHVM(46)LF 0 0 1 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47851464-47851626:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.765869140625 2 563.765517 1125.51648 1.2136 0.00068417 -1.3334 -0.0007517 -0.11979 -6.7535E-05 563.7646442795984 70.744 0.6152 64.568 64.244 64.859 -6.1757 66 32 3 0 0 0 0.047196 1 46082 46082 46.021 22.873 1 48677000 63939 3769 42523 43483 74703 74703 665 -0.04125609528387031 TFTDHVMLF 9 Unmodified _TFTDHVMLF_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47851464-47851626:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8096923828125 2 555.76806 1109.52157 0.9165 0.00050936 1.1924 0.00066273 2.109 0.0011721 555.768647127262 74.116 0.32463 73.64 73.469 73.794 -0.47588 23 13 2 0 0 0 0.13712 1 40527 40527 30.225 20.842 1 1738800 63940 3769 42523 43484 74704 74704 -0.028813056657554625 TFTETDLI 8 Unmodified _TFTETDLI_ 0 0 0 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 REV__nc|ENSG00000165516|Q9Y2U9-2|KLHDC2 MSMS AL20221201_MKP_PDAC_01 4 470.2381896972656 2 470.237116 938.459678 NaN NaN NaN NaN NaN NaN NaN 20.562 1 17.869 17.369 18.369 -2.693 0 0 0 0.97444 1 10958 10958 5.2307 0 1 + 63941 22016 42524 43485 74705 74705 -0.012013338132305762 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.75 2 529.750724 1057.4869 0.34549 0.00018302 -0.4485 -0.00023759 -0.10301 -5.4571E-05 529.7504266204339 57.652 0.30669 57.162 57.003 57.31 -0.48974 44 14 4 0 0 0 0.0067112 2 31279 31279;31377 112.59 51.236 1 27410000 63942 10323 42525 43486 74706;74707 74706 -0.03954805482203483 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7518920898438 2 529.750724 1057.4869 0.74339 0.00039381 -0.16127 -8.5431E-05 0.58212 0.00030838 529.7505857945004 57.257 0.55591 57.191 57.018 57.573 -0.066036 90 27 5 0 0 0 0.0067112 2 31109 31109;31208 112.59 51.236 1 182380000 63943 10323 42525 43486 74708;74709 74708 -0.03954805482203483 TFTFSHATF 9 Unmodified _TFTFSHATF_ 0 0 0 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 ENSG00000204713|ENST00000377199|TRIM27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.751220703125 2 529.750724 1057.4869 1.4716 0.0007796 0.78963 0.00041831 2.2613 0.0011979 529.7513260372434 62.902 1.4078 56.726 55.984 57.391 -6.1757 204 76 5 0 0 0 0.008678 3 40648 40525;40648;41109 88.904 43.639 1 399830000 63944 10323 42525 43486 74710;74711;74712 74711 -0.03954805482203483 TFTKGTGYP 9 Unmodified _TFTKGTGYP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2449340820312 2 486.245275 970.475997 0.73648 0.00035811 -0.44731 -0.0002175 0.28917 0.00014061 486.2450030750806 40.499 0.2487 40.198 40.09 40.339 -0.30094 26 11 3 0 0 0 0.34999 1 21398 21398 14.838 0.93222 1 6504400 + 63945 24007 42526 43487 74713 74713 -0.010422078564602089 TFTKGTGYP 9 Unmodified _TFTKGTGYP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2456970214844 2 486.245275 970.475997 0.57889 0.00028148 0.29659 0.00014422 0.87549 0.0004257 486.24522157438855 40.146 0.14789 40.151 40.108 40.256 0.0050545 12 6 2 0 0 0 0.43463 1 21421 21421 10.824 0.75 1 1242900 + 63946 24007 42526 43487 74714 74714 -0.010422078564602089 TFTKGTGYP 9 Unmodified _TFTKGTGYP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 486.245275 970.475997 0.73648 0.00035811 -0.44731 -0.0002175 0.28917 0.00014061 486.2450030750806 40.499 0.2487 40.198 40.09 40.339 -0.30094 0.023403 -0.00026824 NaN 14.838 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6504400 + 63947 24007 42526 43487 -0.010422078564602089 TFTKGTGYP 9 Unmodified _TFTKGTGYP_ 0 0 0 REV__ENSG00000198265|ENST00000358691|HELZ REV__ENSG00000198265|ENST00000358691|HELZ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 486.245275 970.475997 0.57889 0.00028148 0.29659 0.00014422 0.87549 0.0004257 486.24522157438855 40.146 0.14789 40.151 40.108 40.256 0.0050545 -0.023403 0.00045519 NaN 14.838 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1242900 + 63948 24007 42526 43487 -0.010422078564602089 TFTKRKFGL 9 Unmodified _TFTKRKFGL_ 0 0 0 nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000116604|Q14814-3|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-2|MEF2D;ENSG00000116604|ENST00000348159|MEF2D;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000213999|Q02080|MEF2B;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000068305|Q02078-3|MEF2A;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000081189|Q06413-4|MEF2C nc|ENSG00000116604|Q14814-6|MEF2D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.52294921875 3 366.553715 1096.63931 0.36861 0.00013511 1.9033 0.00069767 2.2719 0.00083279 366.5542924581611 48.014 0.29642 47.975 47.907 48.203 -0.038647 26 14 3 0 0 0 0.21404 1 25883 25883 2.7352 0 1 1903300 63949 3232;16043;10473;1320 42527 43488 74715 74715 0.0948601498523658 TFTQLINL 8 Unmodified _TFTQLINL_ 0 0 0 ENSG00000146006|ENST00000274711|LRRTM2 ENSG00000146006|ENST00000274711|LRRTM2 ENSG00000146006|ENST00000274711|LRRTM2 MSMS AL20221201_MKP_PDAC_01 4 475.2705993652344 2 475.271293 948.528032 NaN NaN NaN NaN NaN NaN NaN 94.944 1 88.769 88.269 89.269 -6.1757 0 0 0 0.90769 1 62886 62886 18.135 3.5533 1 63950 5746 42528 43489 74716 74716 0.05170955557275647 TFTWVCTPF 9 Carbamidomethyl (C) _TFTWVC(Carbamidomethyl (C))TPF_ TFTWVC(1)TPF TFTWVC(51)TPF 0 1 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;ENST00000574224.1_1_16:16108407-16150188:+|nuORF nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MSMS AL20221201_MKP_PDAC_01 4 579.76904296875 2 579.76806 1157.52157 NaN NaN NaN NaN NaN NaN NaN 99.56 1 93.384 92.884 93.884 -6.1757 0 0 0 0.071041 1 66343 66343 50.855 27.707 1 63951 2112 42529 43490 74717 74717 211 -0.050893056657514535 TFVAYLPDYR 10 Unmodified _TFVAYLPDYR_ 0 0 0 ENSG00000147123|ENST00000377811|NDUFB11;nc|ENSG00000147123|Q9NX14-2|NDUFB11 ENSG00000147123|ENST00000377811|NDUFB11 ENSG00000147123|ENST00000377811|NDUFB11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8538818359375 2 622.819138 1243.62372 -0.15106 -9.4085E-05 -4.0841 -0.0025437 -4.2352 -0.0026378 622.8168320554189 69.84 0.33727 69.361 69.064 69.401 -0.47903 22 14 2 0 0 0 0.23325 1 38193 38193 10.074 0.6908 1 1329700 63952 5823 42530 43491 74718 74718 0.011656836775046031 TFVFFMFFIL 10 Unmodified _TFVFFMFFIL_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 656.3470458984375 2 656.345946 1310.67734 NaN NaN NaN NaN NaN NaN NaN 78.178 1 78.178 77.678 78.678 0 0 0 0 1.0019 1 43451 43451 0.45834 0.057624 1 63953 3392 42531 43492 74719 74719 0.03442764855685709 TFVGPNLYGL 10 Unmodified _TFVGPNLYGL_ 0 0 0 REV__nc|ENSG00000115486|P38435-2|GGCX REV__nc|ENSG00000115486|P38435-2|GGCX MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8638305664062 3 360.862325 1079.56515 1.2283 0.00044325 1.4617 0.00052747 2.69 0.00097072 360.8631574534384 17.908 0.30583 15.321 15.152 15.458 -2.5866 58 25 4 0 0 0 0.44373 1 9368 9368 12.175 0 1 6577300 + 63954 18985 42532 43493 74720 74720 0.028546271030336356 TFVLSSLHF 9 Unmodified _TFVLSSLHF_ 0 0 0 REV__ENST00000462324.1_1_1:120266943-120272245:+|nuORF REV__ENST00000462324.1_1_1:120266943-120272245:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 525.7828369140625 2 525.784567 1049.55458 NaN NaN NaN NaN NaN NaN NaN 44.722 1 39.87 39.37 40.37 -4.852 0 0 0 0.46757 1 27332 27332 16.942 0.79319 1 + 63955 27335 42533 43494 74721 74721 0.031786444485987886 TFVRDIPTL 9 Unmodified _TFVRDIPTL_ 0 0 0 REV__nc|ENSG00000116062|P52701-4|MSH6 REV__nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3043212890625 2 531.303124 1060.5917 0.10232 5.4362E-05 0.074759 3.972E-05 0.17708 9.4081E-05 531.3033127855323 85.058 1.1549 78.882 78.172 79.327 -6.1757 174 69 3 0 0 0 0.026499 1 55695 55695 62.573 3.8939 1 92362000 + 63956 19024 42534 43495 74722 74722 0.06382315994369492 TFVSLLLSL 9 Unmodified _TFVSLLLSL_ 0 0 0 REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10 REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.2769470214844 2 496.804968 991.595384 1.1761 0.00058428 0.96397 0.00047891 2.1401 0.0010632 496.80476898570123 100.01 0.092445 93.832 93.792 93.884 -6.1757 6 5 2 0 0 0 0.19891 1 66796 66796 11.64 0 1 6103400 + 63957 21204 42535 43496 74723 74723 0.09924985768248007 TFVWIVADIK 10 Unmodified _TFVWIVADIK_ 0 0 0 REV__nc|ENSG00000091137|O43511-2|SLC26A4 REV__nc|ENSG00000091137|O43511-2|SLC26A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3424682617188 2 596.342249 1190.66995 0.86047 0.00051314 0.57963 0.00034566 1.4401 0.00085879 596.3424466925276 81.065 0.4533 81.125 80.917 81.371 0.059929 51 17 4 0 0 0 0.29752 1 44767 44767 27.629 3.6082 1 10184000 + 63958 17882 42536 43497 74724 74724 0.08223748579598578 TFWKTETL 8 Unmodified _TFWKTETL_ 0 0 0 chr9:4654804-4656041|153|10.88|0.0|20.05|-|0|None,SPATA6L|3 chr9:4654804-4656041|153|10.88|0.0|20.05|-|0|None,SPATA6L|3 chr9:4654804-4656041|153|10.88|0.0|20.05|-|0|None,SPATA6L|3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7900390625 2 513.26875 1024.52295 0.20393 0.00010467 0.1596 8.1916E-05 0.36352 0.00018659 513.2691650787852 66.94 0.21246 66.457 66.333 66.546 -0.48323 14 9 2 0 0 0 8.7369 1 36517 36517 5.2307 0.47466 1 487340 63959 126 42537 43498 74725 74725 0.011666516946661432 TFWLKFRNPYR 11 Unmodified _TFWLKFRNPYR_ 0 0 0 REV__ENST00000497655.1_1_1:202932056-202932895:-|nuORF REV__ENST00000497655.1_1_1:202932056-202932895:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.9441223144531 3 509.945494 1526.81465 0.5063 0.00025819 -2.984 -0.0015217 -2.4777 -0.0012635 510.27792649566084 27.439 0.17895 27.468 27.375 27.554 0.028664 12 7 3 0 0 0 0.71938 1 14259 14259 2.4348 1.1051 1 6030600 + 63960 21475 42538 43499 74726 74726 0.07231809779455034 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8824157714844 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 68.037 1 68.037 67.537 68.537 0 0 0 0 0.94165 1 37936 37936 0.45452 0 1 63961 11075 42539 43500 74727 74727 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821411132812 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 71.819 1 71.819 71.319 72.319 0 0 0 0 0.94307 1 39999 39999 0.08335 0 1 63962 11075 42539 43500 74728 74728 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823852539062 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 73.021 1 73.021 72.521 73.521 0 0 0 0 0.94307 1 40653 40653 0.08335 0 1 63963 11075 42539 43500 74729 74729 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.881591796875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 81.837 1 81.837 81.337 82.337 0 0 0 0 0.94307 1 45413 45413 0.08335 0 1 63964 11075 42539 43500 74730 74730 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826599121094 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 88.616 1 88.616 88.116 89.116 0 0 0 0 0.94307 1 49046 49046 0.08335 0 1 63965 11075 42539 43500 74731 74731 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822631835938 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 90.017 1 90.017 89.517 90.517 0 0 0 0 0.94307 1 49803 49803 0.08335 0 1 63966 11075 42539 43500 74732 74732 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8816833496094 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 90.437 1 90.437 89.937 90.937 0 0 0 0 0.94307 1 50033 50033 0.08335 0 1 63967 11075 42539 43500 74733 74733 -0.01606853963062349 TFWPMEPAARP 11 Unmodified _TFWPMEPAARP_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.88232421875 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 101.08 1 101.08 100.58 101.58 0 0 0 0 0.94307 1 55771 55771 0.08335 0 1 63968 11075 42539 43500 74734 74734 -0.01606853963062349 TFYDKAYDF 9 Unmodified _TFYDKAYDF_ 0 0 0 REV__ENSG00000137573|ENST00000402687|SULF1 REV__ENSG00000137573|ENST00000402687|SULF1 MSMS AL20221201_MKP_PDAC_01 4 585.26220703125 2 585.261122 1168.50769 NaN NaN NaN NaN NaN NaN NaN 89.446 1 83.27 82.77 83.77 -6.1757 0 0 0 0.43483 1 59045 59045 18.146 1.9972 1 + 63969 20251 42540 43501 74735 74735 -0.06982259893197806 TFYLLACAF 9 Unmodified _TFYLLACAF_ 0 0 0 REV__ENST00000463515.1_1_10:103339212-103340251:-|nuORF REV__ENST00000463515.1_1_10:103339212-103340251:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7595825195312 2 524.762246 1047.50994 NaN NaN NaN NaN NaN NaN NaN 65.905 1 65.905 65.405 66.405 0 0 0 0 0.7243 1 36757 36757 8.5933 3.3626 1 + 63970 22090 42541 43502 74736 74736 -0.011915026890619629 TFYPRRTPL 9 Unmodified _TFYPRRTPL_ 0 0 0 nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3;nc|ENSG00000168268|Q9H857-4|NT5DC2;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2 nc|ENSG00000111696|Q86UY8-2|NT5DC3;nc|ENSG00000168268|Q9H857-4|NT5DC2 nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.2771606445312 2 575.822015 1149.62948 0.85901 0.00049464 2.4693 0.0014219 3.3283 0.0019165 576.8276155407666 80.27 0.40927 74.095 73.924 74.334 -6.1757 42 23 3 0 0 0 0.19613 1 52721 52721 12.532 3.9383 1 15290000 63971 2816;7739 42542 43503 74737 74737 0.060648269798548426 TFYPTLWCF 9 Unmodified _TFYPTLWCF_ 0 0 0 ENST00000489120.5_1_2:27346693-27351996:+|nuORF;nc|ENSG00000143994|Q96SE0-3|ABHD1;ENSG00000143994|ENST00000316470|ABHD1 ENST00000489120.5_1_2:27346693-27351996:+|nuORF ENST00000489120.5_1_2:27346693-27351996:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.1852111816406 3 393.184411 1176.5314 -0.068307 -2.6857E-05 -1.1282 -0.00044361 -1.1966 -0.00047047 393.18431147886736 33.468 0.2426 33.496 33.361 33.604 0.028931 27 10 4 0 0 0 0.41742 1 17591 17591 7.609 2.2062 1 7636500 63972 5573 42543 43504 74738 74738 -0.04980117660375072 TFYQDLIL 8 Unmodified _TFYQDLIL_ 0 0 0 ENSG00000131652|ENST00000326266|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6 ENSG00000131652|ENST00000326266|THOC6 ENSG00000131652|ENST00000326266|THOC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7719421386719 2 506.771126 1011.5277 0.076274 3.8654E-05 0.92957 0.00047108 1.0058 0.00050973 506.7713481408471 90.779 0.4771 90.285 90.051 90.528 -0.49457 84 32 3 0 0 0 0.66338 1 49632 49632 20.454 0 1 16228000 63973 4340 42544 43505 74739 74739 0.022395358374410534 TFYQEYETF 9 Unmodified _TFYQEYETF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2635498046875 2 614.263862 1226.51317 0.35416 0.00021755 0.067148 4.1247E-05 0.42131 0.0002588 614.2643796958018 63.465 0.25159 63.465 63.315 63.567 0 25 14 2 0 0 0 0.16226 1 35380 35380 26.884 14.352 1 2282700 63974 5669 42545 43506 74740 74740 -0.09102581101387841 TFYTQFGY 8 Unmodified _TFYTQFGY_ 0 0 0 REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000153253|Q9NY46-4|SCN3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7303466796875 2 513.732 1025.44945 NaN NaN NaN NaN NaN NaN NaN 24.892 1 24.892 24.392 25.392 0 0 0 0 0.97348 1 12736 12736 5.7604 1.4312 1 + 63975 21165 42546 43507 74741 74741 -0.06225896747787374 TGAEGTVYL 9 Unmodified _TGAEGTVYL_ 0 0 0 REV__ENST00000485069.1_1_2:220336438-220336879:+|nuORF REV__ENST00000485069.1_1_2:220336438-220336879:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.4570922851562 1 910.451639 909.444362 -0.022095 -2.0116E-05 0.022737 2.0701E-05 0.00064238 5.8485E-07 910.4516115275115 47.032 0.31302 47.032 46.858 47.171 0 29 14 3 0 0 0 0.2143 1 25725 25725 21.747 0 1 8749700 + 63976 27770 42547 43508 74742 74742 -0.013982006104129141 TGAGEGTLLY 10 Unmodified _TGAGEGTLLY_ 0 0 0 REV__ENSG00000139880|ENST00000487137|CDH24 REV__ENSG00000139880|ENST00000487137|CDH24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.488525390625 1 981.488753 980.481476 0.59111 0.00058017 -0.93933 -0.00092194 -0.34822 -0.00034177 981.4878960719507 51.046 0.31593 51.046 50.938 51.254 0 21 15 2 0 0 0 0.1028 1 28189 28189 46.021 0 1 4480300 + 63977 20436 42548 43509 74743 74743 -0.009545290646542526 TGAHHGPG 8 Unmodified _TGAHHGPG_ 0 0 0 ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 ENSG00000163395|ENST00000335211|IGFN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1736450195312 2 367.172444 732.330336 NaN NaN NaN NaN NaN NaN NaN 82.894 1 82.894 82.394 83.394 0 0 0 0 0.97444 1 45979 45979 2.5775 0 1 63978 6988 42549 43510 74744 74744 -0.046536258619880755 TGALAARRWI 10 Unmodified _TGALAARRWI_ 0 0 0 REV__ENSG00000023572|ENST00000367439|GLRX2 REV__ENSG00000023572|ENST00000367439|GLRX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2202453613281 3 372.220847 1113.64071 NaN NaN NaN NaN NaN NaN NaN 45.886 1 45.858 45.358 46.358 -0.028011 0 0 0 0.93038 1 24671 24671 6.6304 3.3107 1 + 63979 17121 42550 43511 74745 74745 0.08843649073969573 TGASVIRAY 9 Unmodified _TGASVIRAY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2585754394531 2 469.258717 936.50288 -0.79734 -0.00037416 0.17112 8.0299E-05 -0.62622 -0.00029386 469.2586072083973 32.628 0.29575 32.628 32.495 32.79 0 32 15 3 0 0 0 0.0030184 1 17035 17035 126.57 74.298 1 14499000 63980 2613 42551 43512 74746 74746 0.032089007547028814 TGASVIRAY 9 Unmodified _TGASVIRAY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.25830078125 2 469.258717 936.50288 -0.24004 -0.00011264 0.40939 0.00019211 0.16935 7.947E-05 469.25876093373887 32.685 0.28223 32.556 32.392 32.675 -0.12915 21 11 3 0 0 0 0.010611 1 17013 17013 78.728 42.601 1 3295600 63981 2613 42551 43512 74747 74747 0.032089007547028814 TGASVIRAY 9 Unmodified _TGASVIRAY_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2593688964844 2 469.258717 936.50288 0.95882 0.00044994 0.4687 0.00021994 1.4275 0.00066988 469.258961993366 36.937 0.4676 32.654 32.405 32.873 -4.2835 65 28 3 0 0 0 0.0021556 2 21627 21497;21627 131.27 69.91 1 47708000 63982 2613 42551 43512 74748;74749 74749 0.032089007547028814 TGATIFEEY 9 Unmodified _TGATIFEEY_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7415161132812 2 515.740022 1029.46549 0.50185 0.00025882 -0.32623 -0.00016825 0.17562 9.0574E-05 515.7399086721244 60.895 0.47536 60.895 60.695 61.171 0 34 19 2 0 0 0 0.2143 2 33930 33930;34029 21.747 13.836 1 3304300 63983 3218 42552 43513 74750;74751 74750 -0.048062353015666304 TGATIFEEY 9 Unmodified _TGATIFEEY_ 0 0 0 ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF ENSG00000116406|ENST00000318130|EDEM3 ENSG00000116406|ENST00000318130|EDEM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1030.472290039062 1 1030.47277 1029.46549 0.59373 0.00061182 -0.47706 -0.0004916 0.11667 0.00012022 1030.4719903008754 68.506 0.43956 62.33 62.098 62.537 -6.1757 41 26 2 0 0 0 0.0055767 1 44765 44765 115.69 60.918 1 23427000 63984 3218 42552 43513 74752 74752 -0.048062353015666304 TGAVLKGPFS 10 Unmodified _TGAVLKGPFS_ 0 0 0 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 ENSG00000163902|ENST00000296255|RPN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.3058776855469 2 488.776742 975.538931 1.076 0.00052595 0.55014 0.00026889 1.6262 0.00079484 488.77640353178697 50.459 0.29204 44.92 44.725 45.017 -5.5391 32 18 2 0 0 0 0.21193 1 31667 31667 27.629 11.782 1 20885000 63985 7093 42553 43514 74753 74753 0.05018357931567152 TGCCLLCP 8 Unmodified _TGCCLLCP_ 0 0 0 REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1731567382812 2 405.171353 808.328152 NaN NaN NaN NaN NaN NaN NaN 19.952 1 19.952 19.452 20.452 0 0 0 0 0.97444 1 10013 10013 2.5775 0 1 + 63986 27226 42554 43515 74754 74754 -0.08367881977983416 TGCGGQDD 8 Unmodified _TGCGGQDD_ 0 0 0 ENST00000346693.8_1_X:149937177-149937363:-|nuORF ENST00000346693.8_1_X:149937177-149937363:-|nuORF ENST00000346693.8_1_X:149937177-149937363:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.6291198730469 2 376.629418 751.244282 NaN NaN NaN NaN NaN NaN NaN 50.753 1 50.753 50.253 51.253 0 0 0 0 0.97444 1 27993 27993 0 0 1 63987 12032 42555 43516 74755 74755 -0.14128998549688276 TGCKQAIGKF 10 Unmodified _TGCKQAIGKF_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000467219.5_1_12:124265674-124298205:+|nuORF;nc|ENSG00000197653|Q8IVF4-2|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS AL20221201_MKP_PDAC_01 4 351.5249328613281 3 351.523427 1051.54845 NaN NaN NaN NaN NaN NaN NaN 21.003 1 18.31 17.81 18.81 -2.693 0 0 0 0.94014 1 11214 11214 3.3196 0 1 63988 9988 42556 43517 74756 74756 0.024738029454283605 TGDCRGGR 8 Unmodified _TGDCRGGR_ 0 0 0 ENST00000393841.5_1_6:44191398-44193833:+|nuORF ENST00000393841.5_1_6:44191398-44193833:+|nuORF ENST00000393841.5_1_6:44191398-44193833:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.3740234375 1 821.36826 820.360984 -0.21099 -0.0001733 0.49775 0.00040884 0.28676 0.00023553 821.3687733821517 70.421 0.31174 70.421 70.253 70.565 0 27 12 3 0 0 0 0.80992 1 39227 39227 0.69038 0 1 1622700 63989 12719 42557 43518 74757 74757 -0.05638215539261182 TGDDDDWDED 10 Unmodified _TGDDDDWDED_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20221201_MKP_PDAC_01 4 394.7947998046875 3 394.795034 1181.36327 NaN NaN NaN NaN NaN NaN NaN 4.3839 1 1.9019 1.4019 2.4019 -2.482 0 0 0 1.0061 1 2225 2225 0 0 1 63990 4205 42558 43519 74758 74758 -0.2201559790180454 TGDDDDWDED 10 Unmodified _TGDDDDWDED_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20221201_MKP_PDAC_01 4 394.7950134277344 3 394.795034 1181.36327 NaN NaN NaN NaN NaN NaN NaN 7.6242 1 5.1423 4.6423 5.6423 -2.482 0 0 0 1.0061 1 3848 3848 0 0 1 63991 4205 42558 43519 74759 74759 -0.2201559790180454 TGDDDDWDED 10 Unmodified _TGDDDDWDED_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MSMS AL20221201_MKP_PDAC_01 4 394.7959289550781 3 394.795034 1181.36327 NaN NaN NaN NaN NaN NaN NaN 13.526 1 11.044 10.544 11.544 -2.482 0 0 0 1.0061 1 6855 6855 0 0 1 63992 4205 42558 43519 74760 74760 -0.2201559790180454 TGDGHCEA 8 Unmodified _TGDGHCEA_ 0 0 0 REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF REV__ENST00000464395.1_1_10:3185767-3189991:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 789.7827758789062 1 789.283193 788.275917 0.39297 0.00031016 -3.9867 -0.0031466 -3.5937 -0.0028365 789.2803722838225 26.137 0.08432 23.186 23.13 23.214 -2.9511 7 4 2 0 0 0 8.7369 1 14333 14333 0 0 1 4408200 + 63993 27372 42559 43520 74761 74761 -0.12669005795737576 TGDHENWL 8 Unmodified _TGDHENWL_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2153015136719 2 486.214506 970.414459 NaN NaN NaN NaN NaN NaN NaN 55.885 1 55.885 55.385 56.385 0 0 0 0 0.95201 1 31061 31061 10.183 0 1 + 63994 29660 42560 43521 74762 74762 -0.07193139555761263 TGDQNFLK 8 Unmodified _TGDQNFLK_ 0 0 0 nc|ENSG00000070610|Q9HCG7-3|GBA2;nc|ENSG00000070610|Q9HCG7-2|GBA2;ENSG00000070610|ENST00000378103|GBA2;ENST00000486797.1_1_9:35738494-35738838:-|nuORF;ENST00000488292.1_1_9:35738625-35739104:-|nuORF nc|ENSG00000070610|Q9HCG7-3|GBA2 nc|ENSG00000070610|Q9HCG7-3|GBA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2810974121094 2 461.735074 921.455596 NaN NaN NaN NaN NaN NaN NaN 83.493 1 83.556 83.056 84.056 0.063171 0 0 0 0.93587 1 46193 46193 13.508 0 1 63995 1032 42561 43522 74763 74763 -0.008273785162828062 TGDTVYNMLRL 11 Unmodified _TGDTVYNMLRL_ 0 0 0 nc|ENSG00000153015|Q6UX04-2|CWC27;ENSG00000153015|ENST00000381070|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 nc|ENSG00000153015|Q6UX04-2|CWC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.22021484375 3 428.220184 1281.63872 0.49982 0.00021403 0.43088 0.00018451 0.9307 0.00039854 428.2199241393326 69.394 1.7085 69.425 68.194 69.902 0.030914 140 87 3 0 0 0 0.68282 1 38077 38077 5.8681 0 1 48634000 63996 6229 42562 43523 74764 74764 0.00916807483190496 TGEAIVAMI 9 Unmodified _TGEAIVAMI_ 0 0 0 ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B ENSG00000183808|ENST00000520560|RBM12B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7439880371094 2 452.744053 903.473554 NaN NaN NaN NaN NaN NaN NaN 79.389 1 78.9 78.4 79.4 -0.48932 0 0 0 0.82396 1 43482 43482 4.756 0 1 63997 9200 42563 43524 74765 74765 0.017956204142024035 TGELGQEIF 9 Unmodified _TGELGQEIF_ 0 0 0 ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512448.1_1_4:39201144-39207357:+|nuORF ENSG00000157796|ENST00000399820|WDR19 ENSG00000157796|ENST00000399820|WDR19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7589416503906 2 497.248015 992.481476 0.6631 0.00032972 1.9759 0.00098252 2.639 0.0013122 497.248383725572 60.268 0.22857 60.268 60.094 60.322 0 12 9 2 0 0 0 0.1474 1 33542 33542 28.487 5.3384 1 1119000 63998 6540 42564 43525 74766 74766 -0.015065290646589347 TGELLEVPSA 10 Unmodified _TGELLEVPSA_ 0 0 0 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 REV__nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2699890136719 2 508.268947 1014.52334 NaN NaN NaN NaN NaN NaN NaN 18.387 1 18.394 17.894 18.894 0.0060463 0 0 0 0.85122 1 9317 9317 10.074 0 1 + 63999 17812 42565 43526 74767 74767 0.016660266238545773 TGERRPAQT 9 Unmodified _TGERRPAQT_ 0 0 0 REV__ENST00000445160.2_1_3:197282243-197282711:-|nuORF REV__ENST00000445160.2_1_3:197282243-197282711:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 508.2705993652344 2 508.267604 1014.52066 NaN NaN NaN NaN NaN NaN NaN 19.76 1 17.103 16.603 17.603 -2.6564 0 0 0 0.36957 1 10492 10492 21.537 2.28 1 + 64000 27131 42566 43527 74768 74768 0.01397616009558078 TGEWTSTSF 9 Unmodified _TGEWTSTSF_ 0 0 0 REV__nc|ENSG00000163803|Q6P1J6-5|PLB1 REV__nc|ENSG00000163803|Q6P1J6-5|PLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2233581542969 2 508.221997 1014.42944 0.53574 0.00027228 -1.1698 -0.00059451 -0.63405 -0.00032224 508.22174399548334 54.905 0.50584 54.905 54.664 55.17 0 57 21 4 0 0 0 0.30562 1 30592 30592 16.942 2.3606 1 5216300 + 64001 21814 42567 43528 74769 74769 -0.07719692478417528 TGFDCRCGNLF 11 2 Carbamidomethyl (C) _TGFDC(Carbamidomethyl (C))RC(Carbamidomethyl (C))GNLF_ TGFDC(1)RC(1)GNLF TGFDC(140)RC(140)GNLF 0 2 0 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 ENSG00000107372|ENST00000376962|ZFAND5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 673.7857055664062 2 673.784447 1345.55434 1.3087 0.00088179 0.9093 0.00061267 2.218 0.0014945 673.7854681681464 58.888 0.74546 52.813 52.319 53.065 -6.0745 120 41 4 0 0 0 2.4991E-15 3 37878 37622;37744;37878 139.38 116.64 1 71372000 64002 2493 42568 43529 74770;74771;74772 74772 248;249 -0.10461466605192982 TGFECRCGNVY 11 2 Carbamidomethyl (C) _TGFEC(Carbamidomethyl (C))RC(Carbamidomethyl (C))GNVY_ TGFEC(1)RC(1)GNVY TGFEC(81)RC(81)GNVY 0 2 0 ENST00000557983.1_1_15:80423514-80429967:+|nuORF;nc|ENSG00000086666|Q6FIF0-2|ZFAND6;ENSG00000086666|ENST00000261749|ZFAND6 ENST00000557983.1_1_15:80423514-80429967:+|nuORF ENST00000557983.1_1_15:80423514-80429967:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 681.7826538085938 2 681.781904 1361.54925 NaN NaN NaN NaN NaN NaN NaN 36.525 1 32.242 31.742 32.742 -4.2835 0 0 0 0.00076678 1 21337 21337 80.896 64.746 1 64003 1441 42569 43530 74773 74773 135;136 -0.11705770467801813 TGFFTVTSY 9 Unmodified _TGFFTVTSY_ 0 0 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7447814941406 2 511.745108 1021.47566 0.51308 0.00026257 0.16817 8.6059E-05 0.68125 0.00034863 511.74498875393306 72.99 0.28823 72.514 72.363 72.651 -0.47588 26 12 3 0 0 0 0.2143 1 39934 39934 21.747 11.563 1 1080600 64004 2653 42570 43531 74774 74774 -0.034216275763242265 TGFIHTSP 8 Unmodified _TGFIHTSP_ 0 0 0 REV__ENSG00000275023|ENST00000621332|MLLT6 REV__ENSG00000275023|ENST00000621332|MLLT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 859.4274291992188 1 859.430844 858.423567 0.088936 7.6434E-05 -2.4665 -0.0021198 -2.3776 -0.0020433 859.4283461803187 102.12 0.069687 102.12 102.07 102.13 0 4 2 2 0 0 0 0.80992 1 56328 56328 0.69038 0 1 2424600 + 64005 24645 42571 43532 74775 74775 -0.01130746199442001 TGFIHTSP 8 Unmodified _TGFIHTSP_ 0 0 0 REV__ENSG00000275023|ENST00000621332|MLLT6 REV__ENSG00000275023|ENST00000621332|MLLT6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 859.430844 858.423567 0.088936 7.6434E-05 -2.4665 -0.0021198 -2.3776 -0.0020433 859.4283461803187 102.12 0.069687 102.12 102.07 102.13 0 0 0 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2424600 + 64006 24645 42571 43532 -0.01130746199442001 TGFLDALSIL 10 Unmodified _TGFLDALSIL_ 0 0 0 ENST00000471008.5_1_6:30032470-30032638:+|nuORF ENST00000471008.5_1_6:30032470-30032638:+|nuORF ENST00000471008.5_1_6:30032470-30032638:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7651977539062 2 525.297507 1048.58046 0.649 0.00034092 -1.7031 -0.00089466 -1.0541 -0.00055374 525.2974236661237 52.806 0.41591 52.806 52.75 53.166 0 29 19 2 0 0 0 0.18632 1 29399 29399 19.257 3.4098 1 1622600 64007 13865 42572 43533 74776 74776 0.058114939002507526 TGFNGKLVY 9 Unmodified _TGFNGKLVY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7689208984375 2 499.768917 997.523281 0.58782 0.00029377 1.7867 0.00089295 2.3745 0.0011867 499.7693463758401 45.805 0.44454 45.805 45.704 46.149 0 31 21 2 0 0 0 0.024882 1 24991 24991 58.679 22.635 1 13222000 64008 1378 42573 43534 74777 74777 0.02442071414509428 TGFNGKLVY 9 Unmodified _TGFNGKLVY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7691040039062 2 499.768917 997.523281 0.12716 6.355E-05 0.40804 0.00020393 0.5352 0.00026748 499.7690562656637 46.127 0.36818 45.791 45.608 45.976 -0.33664 54 18 4 0 0 0 0.0094097 2 24625 24625;24736 82.529 52.305 1 127460000 64009 1378 42573 43534 74778;74779 74778 0.02442071414509428 TGFNGKLVY 9 Unmodified _TGFNGKLVY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7692565917969 2 499.768917 997.523281 0.26767 0.00013377 0.99264 0.00049609 1.2603 0.00062986 499.76900993316366 45.814 0.4082 45.786 45.565 45.973 -0.028011 42 19 3 0 0 0 0.0082475 2 24614 24614;24721 92.653 56.609 1 16230000 64010 1378 42573 43534 74780;74781 74780 0.02442071414509428 TGFNGKLVY 9 Unmodified _TGFNGKLVY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7692565917969 2 499.768917 997.523281 1.0966 0.00054803 -0.064989 -3.248E-05 1.0316 0.00051555 499.7687049530971 51.143 0.56961 45.494 45.184 45.753 -5.649 104 34 4 0 0 0 0.0013034 3 32190 32057;32190;32320 137.42 83.848 1 393660000 64011 1378 42573 43534 74782;74783;74784 74783 0.02442071414509428 TGFQYDVI 8 Unmodified _TGFQYDVI_ 0 0 0 nc|ENSG00000197006|Q9H1A3-2|METTL9;ENSG00000197006|ENST00000358154|METTL9 nc|ENSG00000197006|Q9H1A3-2|METTL9 nc|ENSG00000197006|Q9H1A3-2|METTL9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2441101074219 2 471.732 941.449448 0.38428 0.00018128 1.4839 0.00070001 1.8682 0.00088129 471.73278444833755 58.38 0.49016 58.38 58.233 58.723 0 34 19 2 0 0 0 8.7369 1 32584 32584 11.64 0 1 1404500 64012 9895 42574 43535 74785 74785 -0.023618967478228114 TGFVPAWYSPE 11 Unmodified _TGFVPAWYSPE_ 0 0 0 REV__nc|ENSG00000103196|Q9H0B8-2|CRISPLD2 REV__nc|ENSG00000103196|Q9H0B8-2|CRISPLD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5326232910156 3 418.532756 1252.57644 0.33803 0.00014148 0.78032 0.00032659 1.1183 0.00046806 418.53305365348297 69.417 0.4391 69.448 69.207 69.646 0.030914 40 24 2 0 0 0 0.56638 2 38117 38117;38245 7.0371 0.84524 1 12470000 + 64013 18290 42575 43536 74786;74787 74786 -0.03974595593467711 TGGAYGED 8 Unmodified _TGGAYGED_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MSMS AL20221201_MKP_PDAC_01 4 385.1541442871094 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 10.973 1 8.491 7.991 8.991 -2.482 0 0 0 0.97444 1 5525 5525 0.69038 0 1 64014 7904 42576 43537 74788 74788 -0.1008018163813631 TGGFATFSSC 10 Unmodified _TGGFATFSSC_ 0 0 0 ENSG00000184545|ENST00000397374|DUSP8;ENST00000422884.1_1_10:75491660-75492464:+|nuORF ENSG00000184545|ENST00000397374|DUSP8 ENSG00000184545|ENST00000397374|DUSP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2034301757812 2 489.205292 976.396032 -0.47151 -0.00023067 -1.1511 -0.00056314 -1.6226 -0.00079381 489.2044250382052 27.052 0.2499 27.052 26.889 27.139 0 17 11 2 0 0 0 0.67033 1 13950 13950 6.2058 1.8765 1 1087800 64015 9267 42577 43538 74789 74789 -0.0931101752196355 TGGIGVVDAI 10 Unmodified _TGGIGVVDAI_ 0 0 0 REV__ENSG00000088387|ENST00000682017|DOCK9 REV__ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2539978027344 2 451.2531 900.491647 0.80373 0.00036268 -0.25902 -0.00011689 0.5447 0.0002458 451.2530673387602 60.204 0.25394 60.204 60.068 60.322 0 18 10 2 0 0 0 0.52888 1 33586 33586 14.838 0 1 1097000 + 64016 17805 42578 43539 74790 74790 0.037420786605480316 TGGLGLLGLY 10 Unmodified _TGGLGLLGLY_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 963.5513916015625 1 963.550959 962.543683 0.78802 0.00075929 0.12959 0.00012487 0.91761 0.00088416 963.5509629857021 63.448 0.37458 57.273 57.094 57.469 -6.1757 35 21 2 0 0 0 0.04925 1 41067 41067 58.679 3.9053 1 20818000 64017 1673;3680;6083 42579 43540 74791 74791 0.06091242074319325 TGHREWIP 8 Unmodified _TGHREWIP_ 0 0 0 ENST00000572915.6_1_17:2573570-2586914:+|nuORF ENST00000572915.6_1_17:2573570-2586914:+|nuORF ENST00000572915.6_1_17:2573570-2586914:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2566528320312 2 498.256508 994.498464 -0.14905 -7.4265E-05 -0.59212 -0.00029503 -0.74117 -0.00036929 498.2563244742407 31.861 0.25685 31.891 31.732 31.988 0.030106 27 11 3 0 0 0 0.6895 1 16672 16672 18.135 1.0221 1 9634000 64018 15495 42580 43541 74792 74792 0.0009943633180000688 TGIDLENIVY 10 Unmodified _TGIDLENIVY_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000243156|Q7RTP6-4|MICAL3;nc|ENSG00000243156|Q7RTP6-3|MICAL3;nc|ENSG00000243156|Q7RTP6-5|MICAL3;ENSG00000243156|ENST00000441493|MICAL3;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1 nc|ENSG00000133816|O94851-3|MICAL2;nc|ENSG00000243156|Q7RTP6-2|MICAL3;nc|ENSG00000135596|Q8TDZ2-2|MICAL1 nc|ENSG00000133816|O94851-3|MICAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7952270507812 2 568.795329 1135.5761 0.33153 0.00018857 1.1864 0.0006748 1.5179 0.00086337 568.7957937946074 80.712 0.19698 80.712 80.62 80.817 0 16 10 2 0 0 0 0.64628 1 44815 44815 8.7454 0 1 340480 64019 4535;10705;4723 42581 43542 74793 74793 0.01373984686665608 TGIKDFDFW 9 Unmodified _TGIKDFDFW_ 0 0 0 nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 nc|ENSG00000197694|Q13813-3|SPTAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8504638671875 3 376.850197 1127.52876 0.57557 0.00021691 1.392 0.00052459 1.9676 0.00074149 376.850659003559 64.889 0.3374 64.889 64.739 65.077 1.5259E-05 39 16 3 0 0 0 0.55775 1 35535 35535 2.2828 0 1 6526700 64020 9990 42582 43543 74794 74794 -0.029902497936518557 TGIQTTVVF 9 Unmodified _TGIQTTVVF_ 0 0 0 ENSG00000132881|ENST00000375599|CPLANE2 ENSG00000132881|ENST00000375599|CPLANE2 ENSG00000132881|ENST00000375599|CPLANE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2694702148438 2 483.26875 964.522947 0.53838 0.00026018 -0.9098 -0.00043968 -0.37142 -0.0001795 483.2682227020758 52.681 0.71804 52.247 52.023 52.741 -0.43381 126 36 5 0 0 0 0.12424 1 28710 28710 30.637 0 1 694120000 64021 4461 42583 43544 74795 74795 0.03926651694666816 TGIQTTVVF 9 Unmodified _TGIQTTVVF_ 0 0 0 ENSG00000132881|ENST00000375599|CPLANE2 ENSG00000132881|ENST00000375599|CPLANE2 ENSG00000132881|ENST00000375599|CPLANE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2694396972656 2 483.26875 964.522947 1.066 0.00051518 -0.76743 -0.00037087 0.29861 0.00014431 483.268203255953 59.343 0.94191 53.228 52.662 53.604 -6.1147 185 51 5 0 0 0 0.06294 1 38281 38281 41.84 0 1 2988599999.9999995 64022 4461 42583 43544 74796 74796 0.03926651694666816 TGISEFVLL 9 Unmodified _TGISEFVLL_ 0 0 0 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5505981445312 1 978.550625 977.543348 0.43275 0.00042347 -0.49026 -0.00047974 -0.057503 -5.6269E-05 978.549756621513 83.009 0.39137 82.511 82.306 82.698 -0.49751 36 15 3 0 0 0 0.095405 1 45389 45389 34.102 0 1 2801800 64023 9369 42584 43545 74797 74797 0.053678223544807224 TGISEFVLL 9 Unmodified _TGISEFVLL_ 0 0 0 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 ENSG00000185385|ENST00000641113|OR7A17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.551513671875 1 978.550625 977.543348 0.71168 0.00069642 0.43329 0.000424 1.145 0.0011204 978.5506902576014 91.413 0.46197 85.237 85.028 85.49 -6.1757 45 25 2 0 0 0 0.042911 1 60471 60471 48.346 0 1 11751000 64024 9369 42584 43545 74798 74798 0.053678223544807224 TGKLENWA 8 Unmodified _TGKLENWA_ 0 0 0 REV__ENSG00000155368|ENST00000355857|DBI REV__ENSG00000155368|ENST00000355857|DBI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7378540039062 2 459.737617 917.460681 0.74133 0.00034082 -1.2855 -0.00059097 -0.54412 -0.00025015 459.7370540009904 50.48 0.24155 50.066 49.95 50.192 -0.41351 19 11 2 0 0 0 0.19688 1 27193 27193 71.134 22.788 1 3779200 + 64025 21268 42585 43546 74799 74799 -0.0013507465366728866 TGKLENWA 8 Unmodified _TGKLENWA_ 0 0 0 REV__ENSG00000155368|ENST00000355857|DBI REV__ENSG00000155368|ENST00000355857|DBI MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7379760742188 2 459.737617 917.460681 0.89235 0.00041025 -0.01098 -5.0479E-06 0.88137 0.0004052 459.7376121422592 55.723 0.433 49.802 49.573 50.006 -5.9211 42 25 2 0 0 0 0.19688 2 35538 35402;35538 71.134 17.558 1 15524000 + 64026 21268 42585 43546 74800;74801 74801 -0.0013507465366728866 TGKLENWA 8 Unmodified _TGKLENWA_ 0 0 0 REV__ENSG00000155368|ENST00000355857|DBI REV__ENSG00000155368|ENST00000355857|DBI MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 459.737617 917.460681 0.74133 0.00034082 -1.2855 -0.00059097 -0.54412 -0.00025015 459.7370540009904 50.48 0.24155 50.066 49.95 50.192 -0.41351 0.13212 -0.00074394 NaN 71.134 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3779200 + 64027 21268 42585 43546 -0.0013507465366728866 TGLASLLLL 9 Unmodified _TGLASLLLL_ 0 0 0 ENSG00000259803|ENST00000682282|SLC22A31;nc|ENSG00000259803|A6NKX4|SLC22A31 ENSG00000259803|ENST00000682282|SLC22A31 ENSG00000259803|ENST00000682282|SLC22A31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.7924194335938 2 450.791861 899.569169 1.339 0.00060361 -0.50062 -0.00022568 0.83837 0.00037793 450.79165672787934 96.239 0.55882 90.063 89.73 90.289 -6.1757 57 33 2 0 0 0 0.023164 2 63799 63667;63799 60.39 15.983 1 10931000 64028 10823 42586 43547 74802;74803 74803 0.11536716596765473 TGLDLAEG 8 Unmodified _TGLDLAEG_ 0 0 0 REV__ENSG00000065328|ENST00000378714|MCM10 REV__ENSG00000065328|ENST00000378714|MCM10 MSMS AL20221201_MKP_PDAC_01 4 388.196533203125 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 18.827 1 16.205 15.705 16.705 -2.6215 0 0 0 0.95607 1 9938 9938 9.3474 0 1 + 64029 17374 42587 43548 74804 74804 -0.020264451902789915 TGLDMPLI 8 Unmodified _TGLDMPLI_ 0 0 0 REV__nc|ENSG00000175224|O75143-4|ATG13 REV__nc|ENSG00000175224|O75143-4|ATG13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2337951660156 2 430.233322 858.45209 0.89921 0.00038687 -0.23012 -9.9005E-05 0.6691 0.00028787 430.23314024806973 99.216 0.36682 93.04 92.807 93.174 -6.1757 35 21 2 0 0 0 0.61462 1 65992 65992 24.674 0 1 20115000 + 64030 22855 42588 43549 74805 74805 0.017202353854941066 TGLELTFF 8 Unmodified _TGLELTFF_ 0 0 0 nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11 nc|ENSG00000092931|O43934-2|MFSD11 nc|ENSG00000092931|O43934-2|MFSD11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2429504394531 2 464.244744 926.474934 NaN NaN NaN NaN NaN NaN NaN 25.577 1 25.577 25.077 26.077 0 0 0 0 0.97348 1 13118 13118 5.7604 0 1 64031 1624 42589 43550 74806 74806 0.008755777746159765 TGLEREIM 8 Unmodified _TGLEREIM_ 0 0 0 ENSG00000135940|ENST00000258424|COX5B ENSG00000135940|ENST00000258424|COX5B ENSG00000135940|ENST00000258424|COX5B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2647399902344 2 474.744585 947.474617 0.62626 0.00029731 -3.9527 -0.0018765 -3.3265 -0.0015792 474.74289180706967 36.326 0.19974 36.326 36.249 36.448 0 13 9 2 0 0 0 8.7369 1 19266 19266 13.508 4.9146 1 1048000 64032 4764 42590 43551 74807 74807 -0.0012216521688515058 TGLGPEKTSF 10 Unmodified _TGLGPEKTSF_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENST00000546564.5_1_12:120636605-120638589:-|nuORF;ENST00000548568.5_1_12:120636605-120638589:-|nuORF nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7689208984375 2 518.769114 1035.52368 0.62371 0.00032356 -1.4813 -0.00076847 -0.85762 -0.00044491 518.7681940379974 36.219 0.18195 36.219 36.148 36.33 0 11 8 2 0 0 0 0.086206 1 19215 19215 49.742 19.901 1 3376300 64033 1518 42591 43552 74808 74808 0.007334463437246086 TGLIFFFCRDR 11 Unmodified _TGLIFFFCRDR_ 0 0 0 AluJb_dup115673|chr19:17814641-17814928:+|3.4394704639546965|0.4649285931816585|2.89|178.0|13|1|anti-sense AluJb_dup115673|chr19:17814641-17814928:+|3.4394704639546965|0.4649285931816585|2.89|178.0|13|1|anti-sense AluJb_dup115673|chr19:17814641-17814928:+|3.4394704639546965|0.4649285931816585|2.89|178.0|13|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.8535766601562 2 687.85299 1373.69143 0.44505 0.00030613 0.29206 0.00020089 0.73711 0.00050702 687.8531117091823 67.495 0.45021 67.013 66.758 67.208 -0.48219 70 19 5 0 0 0 0.6889 1 36880 36880 5.2969 0.39987 1 24606000 64034 16 42592 43553 74809 74809 0.019528103366610594 TGLINLMVDTL 11 Unmodified _TGLINLMVDTL_ 0 0 0 ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW ENSG00000277161|ENST00000614443|PIGW MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3264770507812 2 595.328482 1188.64241 0.022599 1.3454E-05 -2.0059 -0.0011942 -1.9833 -0.0011807 595.3270547135285 26.437 0.26059 23.486 23.358 23.619 -2.9511 23 13 2 0 0 0 0.48615 1 14557 14557 17.113 3.2068 1 6007700 64035 10920 42593 43554 74810 74810 0.05563477257055638 TGLKKLMH 8 Unmodified _TGLKKLMH_ 0 0 0 ENST00000586275.1_1_19:10563984-10570204:+|nuORF;nc|ENSG00000065989|P27815-4|PDE4A;nc|ENSG00000065989|P27815-3|PDE4A;nc|ENSG00000065989|P27815-6|PDE4A;nc|ENSG00000065989|P27815-2|PDE4A;nc|ENSG00000065989|P27815-7|PDE4A;ENSG00000065989|ENST00000380702|PDE4A ENST00000586275.1_1_19:10563984-10570204:+|nuORF ENST00000586275.1_1_19:10563984-10570204:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 464.2767639160156 2 464.275855 926.537157 NaN NaN NaN NaN NaN NaN NaN 46.685 1 41.605 41.105 42.105 -5.0805 0 0 0 0.95607 1 28887 28887 9.3474 0 1 64036 922 42594 43555 74811 74811 0.07095025641979191 TGLLDAFPRA 10 Unmodified _TGLLDAFPRA_ 0 0 0 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 REV__nc|ENSG00000128815|Q6ZS81-5|WDFY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7925415039062 2 530.792924 1059.57129 0.38813 0.00020602 -0.28631 -0.00015197 0.10182 5.4046E-05 530.792532273663 70.06 0.39484 70.094 69.939 70.334 0.033592 33 19 2 0 0 0 0.060508 1 38555 38555 55.503 1.6699 1 3653800 + 64037 19635 42595 43556 74812 74812 0.04389145334562272 TGLSALLL 8 Unmodified _TGLSALLL_ 0 0 0 REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2503051757812 2 394.249829 786.485105 0.066545 2.6235E-05 -0.16836 -6.6375E-05 -0.10181 -4.014E-05 394.2496658714669 69.466 0.30993 69.466 69.326 69.636 0 20 13 2 0 0 0 0.50586 1 38707 38707 34.187 0 1 907080 + 64038 26093 42596 43557 74813 74813 0.0833218549985304 TGLSALLL 8 Unmodified _TGLSALLL_ 0 0 0 REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF REV__ENST00000371740.9_1_6:44193872-44195054:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.249829 786.485105 0.066545 2.6235E-05 -0.16836 -6.6375E-05 -0.10181 -4.014E-05 394.2496658714669 69.466 0.30993 69.466 69.326 69.636 0 0.026253 -0.00018908 NaN 34.187 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 907080 + 64039 26093 42596 43557 0.0833218549985304 TGLSGAGK 8 Unmodified _TGLSGAGK_ 0 0 0 ENSG00000198682|ENST00000456849|PAPSS2;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000198682|ENST00000456849|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.3330688476562 1 690.37808 689.370804 0.80669 0.00055692 3.4942 0.0024123 4.3008 0.0029692 690.380886359497 50.455 0.24155 50.062 49.971 50.213 -0.3923 18 11 2 0 0 0 8.7369 1 27171 27171 0.69038 0 1 4023500 64040 5109;10122 42597 43558 74814 74814 0.013692957377770654 TGLSGAGK 8 Unmodified _TGLSGAGK_ 0 0 0 ENSG00000198682|ENST00000456849|PAPSS2;nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000198682|ENST00000456849|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 690.37808 689.370804 1.5178 0.0010478 3.5113 0.0024241 5.029 0.0034719 690.3804614185894 50.099 0.30296 50.05 49.927 50.23 -0.048824 -0.0061606 5.0555E-06 NaN 0.69038 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2262500 64041 5109;10122 42597 43558 0.013692957377770654 TGLSGLRPEE 10 Unmodified _TGLSGLRPEE_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MSMS AL20221201_MKP_PDAC_01 4 529.7798461914062 2 529.77747 1057.54039 NaN NaN NaN NaN NaN NaN NaN 26.459 1 23.508 23.008 24.008 -2.9511 0 0 0 0.59691 1 14583 14583 21.537 1.0834 1 64042 8037 42598 43559 74815 74815 0.013919472296720414 TGLSSTQSPS 10 Unmodified _TGLSSTQSPS_ 0 0 0 REV__nc|ENSG00000162599|Q12857-2|NFIA REV__nc|ENSG00000162599|Q12857-2|NFIA MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7297973632812 2 482.732729 963.450904 0.34865 0.00016831 -3.4097 -0.001646 -3.061 -0.0014777 482.72987563333953 24.464 0.22695 21.637 21.534 21.761 -2.8273 21 12 2 0 0 0 0.23548 1 13341 13341 31.268 4.3847 1 1976100 + 64043 21662 42599 43560 74816 74816 -0.032283074497058806 TGLTDEYEGAF 11 Unmodified _TGLTDEYEGAF_ 0 0 0 REV__ENSG00000155115|ENST00000329970|GTF3C6 REV__ENSG00000155115|ENST00000329970|GTF3C6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7630004882812 2 601.764226 1201.5139 NaN NaN NaN NaN NaN NaN NaN 59.793 1 59.302 58.802 59.802 -0.49079 0 0 0 0.93224 1 32539 32539 5.7319 0.97584 1 + 64044 21260 42600 43561 74817 74817 -0.07879786452326698 TGLTGGWHSLC 11 Unmodified _TGLTGGWHSLC_ 0 0 0 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2687377929688 2 566.266216 1130.51788 0.59478 0.00033681 2.9001 0.0016422 3.4949 0.001979 566.2678862819535 47.939 0.24278 47.939 47.789 48.032 0 29 11 3 0 0 0 0.39949 1 26255 26255 21.537 3.1639 1 4929900 + 64045 28331 42601 43562 74818 74818 -0.042159754395697746 TGLTGGWHSLC 11 Unmodified _TGLTGGWHSLC_ 0 0 0 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2682495117188 2 566.266216 1130.51788 0.62672 0.00035489 2.6624 0.0015076 3.2891 0.0018625 566.2679727806412 48.278 0.19085 47.906 47.849 48.039 -0.37172 13 9 2 0 0 0 0.50515 1 25913 25913 16.149 4.6544 1 2581200 + 64046 28331 42601 43562 74819 74819 -0.042159754395697746 TGLTGGWHSLC 11 Unmodified _TGLTGGWHSLC_ 0 0 0 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 REV__nc|ENSG00000142512|Q96LC7-5|SIGLEC10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 566.266216 1130.51788 0.62672 0.00035489 2.6624 0.0015076 3.2891 0.0018625 566.2679727806412 48.278 0.19085 47.906 47.849 48.039 -0.37172 -0.016271 -0.00014594 NaN 21.537 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2581200 + 64047 28331 42601 43562 -0.042159754395697746 TGLTWAAA 8 Unmodified _TGLTWAAA_ 0 0 0 REV__ENST00000585075.1_1_17:73268124-73268835:+|nuORF REV__ENST00000585075.1_1_17:73268124-73268835:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2316589355469 2 395.708328 789.402104 NaN NaN NaN NaN NaN NaN NaN 50.414 1 50.022 49.522 50.522 -0.3923 0 0 0 0.95973 1 27147 27147 8.5933 0 1 + 64048 29090 42602 43563 74820 74820 -0.0010213122816367104 TGLWPTISQF 10 Unmodified _TGLWPTISQF_ 0 0 0 nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 nc|ENSG00000028116|Q86Y07-4|VRK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.4587707519531 3 383.86948 1148.58661 1.1677 0.00044826 2.1035 0.00080748 3.2713 0.0012557 384.2038707879559 28.616 0.17591 25.468 25.358 25.534 -3.1482 13 8 2 0 0 0 0.23227 1 15949 15949 3.5871 2.8105 1 3325500 64049 569 42603 43564 74821 74821 0.018260121317553057 TGLYSTFTY 9 Unmodified _TGLYSTFTY_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.751953125 2 526.75039 1051.48623 NaN NaN NaN NaN NaN NaN NaN 65.02 1 64.536 64.036 65.036 -0.48428 0 0 0 0.6306 1 35478 35478 11.64 3.047 1 64050 3847 42604 43565 74822 74822 -0.03745644921878011 TGNIFWSY 8 Unmodified _TGNIFWSY_ 0 0 0 REV__ENSG00000086548|ENST00000199764|CEACAM6 REV__ENSG00000086548|ENST00000199764|CEACAM6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2097473144531 2 494.232168 986.449782 -0.51379 -0.00025393 -0.8184 -0.00040448 -1.3322 -0.00065841 494.23182647363274 26.899 0.18773 26.899 26.824 27.012 0 11 8 2 0 0 0 8.7369 1 13812 13812 9.3474 4.1168 1 647890 + 64051 17768 42605 43566 74823 74823 -0.04398477027950776 TGNPTVIKM 9 Oxidation (M) _TGNPTVIKM(Oxidation (M))_ TGNPTVIKM(1) TGNPTVIKM(52) 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7599487304688 2 488.760235 975.505917 -0.25129 -0.00012282 -0.36128 -0.00017658 -0.61258 -0.0002994 488.7601066508868 21.371 0.28226 21.371 21.227 21.509 0 98 39 3 0 0 0 0.036857 1 10858 10858 51.63 29.883 1 6705600 64052 5256;5714 42606 43567 74824 74824 971 0.01718407817213574 TGNPTVIKM 9 Oxidation (M) _TGNPTVIKM(Oxidation (M))_ TGNPTVIKM(1) TGNPTVIKM(68) 0 0 1 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7600708007812 2 488.760235 975.505917 0.24484 0.00011967 -0.30655 -0.00014983 -0.061714 -3.0163E-05 488.7602341032441 24.343 0.4558 21.515 21.305 21.761 -2.8273 59 25 3 0 0 0 0.015688 2 13283 13172;13283 67.838 40.955 1 23447000 64053 5256;5714 42606 43567 74825;74826 74826 971 0.01718407817213574 TGNPTVIKM 9 Unmodified _TGNPTVIKM_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7626342773438 2 480.762778 959.511002 1.554 0.00074708 -0.55061 -0.00026471 1.0033 0.00048237 480.7626048591708 41.689 0.46076 37.081 36.868 37.329 -4.6079 86 29 4 0 0 0 0.0089732 3 24959 24959;25093;25236 86.332 50.288 1 58184000 64054 5256;5714 42606 43568 74827;74828;74829 74827 0.02962711679822405 TGPALLTA 8 Unmodified _TGPALLTA_ 0 0 0 REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF REV__ENST00000593460.1_1_19:18119032-18119587:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.7184143066406 2 372.218529 742.422505 0.64132 0.00023871 -0.65589 -0.00024413 -0.014569 -5.423E-06 372.21975298852095 49.416 0.419 49.37 49.174 49.593 -0.04541 69 20 5 0 0 0 0.80992 1 26684 26684 0.69038 0 1 19716000 + 64055 29191 42607 43569 74830 74830 0.04099039431650908 TGPFVAFGIEA 11 Unmodified _TGPFVAFGIEA_ 0 0 0 nc|ENSG00000167646|Q8N9W5-3|DNAAF3;nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3 nc|ENSG00000167646|Q8N9W5-3|DNAAF3 nc|ENSG00000167646|Q8N9W5-3|DNAAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1109.573364257812 1 1108.56734 1107.56006 -0.2564 -0.00028424 1.7576 0.0019484 1.5012 0.0016642 1108.569346363882 76.724 0.2156 76.245 76.149 76.365 -0.47945 17 10 2 0 0 0 0.6889 1 42039 42039 5.2969 0.96765 1 1200200 64056 16360 42608 43570 74831 74831 0.010583232404314913 TGPGTGAEAL 10 Unmodified _TGPGTGAEAL_ 0 0 0 nc|ENSG00000146054|Q9C029-1|TRIM7;ENSG00000146054|ENST00000274773|TRIM7 nc|ENSG00000146054|Q9C029-1|TRIM7 nc|ENSG00000146054|Q9C029-1|TRIM7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 436.7043762207031 2 437.219257 872.423961 0.49217 0.00021519 1.6655 0.0007282 2.1577 0.00094339 437.22015764925146 38.74 0.26278 34.289 34.098 34.361 -4.4509 20 16 2 0 0 0 0.21783 1 22862 22862 24.021 0 1 11105000 64057 5748 42609 43571 74832 74832 -0.017353712702515622 TGPLELLQ 8 Unmodified _TGPLELLQ_ 0 0 0 ENST00000514847.5_1_12:112150343-112159544:+|nuORF;nc|ENSG00000111271|Q6JQN1-2|ACAD10;ENST00000413681.7_1_12:112130513-112186840:+|nuORF;ENSG00000111271|ENST00000313698|ACAD10;nc|ENSG00000111271|Q6JQN1-5|ACAD10 ENST00000514847.5_1_12:112150343-112159544:+|nuORF ENST00000514847.5_1_12:112150343-112159544:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.5010986328125 1 870.49311 869.485833 -0.63955 -0.00055672 0.27294 0.0002376 -0.36661 -0.00031913 870.4932355595349 55.825 0.38599 55.347 55.152 55.538 -0.47798 52 18 4 0 0 0 0.80383 1 30272 30272 4.3292 0 1 22350000 64058 2776 42610 43572 74833 74833 0.0458698014890615 TGPLTLLDGP 10 Unmodified _TGPLTLLDGP_ 0 0 0 REV__ENSG00000198841|ENST00000371614|KTI12 REV__ENSG00000198841|ENST00000371614|KTI12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2746887207031 2 492.274032 982.533512 0.39861 0.00019622 1.2538 0.0006172 1.6524 0.00081343 492.27470940854676 20.809 0.34232 20.82 20.601 20.943 0.010553 25 16 2 0 0 0 0.44373 1 10606 10606 19.257 0 1 2102200 + 64059 24075 42611 43573 74834 74834 0.04154634349106345 TGPLYFML 8 Unmodified _TGPLYFML_ 0 0 0 REV__ENST00000527932.1_1_1:46080644-46081380:+|nuORF REV__ENST00000527932.1_1_1:46080644-46081380:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2441101074219 2 471.243689 940.472826 NaN NaN NaN NaN NaN NaN NaN 58.518 1 58.518 58.018 59.018 0 0 0 0 0.97348 1 32584 32584 5.7604 0 1 + 64060 28403 42612 43574 74835 74835 0.0002082576515931578 TGPQARLEL 9 Unmodified _TGPQARLEL_ 0 0 0 REV__ENSG00000109101|ENST00000579795|FOXN1 REV__ENSG00000109101|ENST00000579795|FOXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7765502929688 2 492.777274 983.539994 -0.37892 -0.00018672 -1.1145 -0.00054922 -1.4935 -0.00073594 492.77662534882637 40.967 0.27753 40.967 40.876 41.154 0 45 20 3 0 0 0 0.42049 1 22138 22138 11.495 0.67078 1 23661000 + 64061 18644 42613 43575 74836 74836 0.04756572300470907 TGPRFIAWVV 10 Unmodified _TGPRFIAWVV_ 0 0 0 REV__nc|ENSG00000198216|Q15878-2|CACNA1E REV__nc|ENSG00000198216|Q15878-2|CACNA1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5533447265625 3 382.553715 1144.63931 -0.54999 -0.0002104 0.46784 0.00017897 -0.082157 -3.1429E-05 382.5537211221798 15.018 0.078839 15.004 14.955 15.034 -0.014067 33 23 2 0 0 0 0.71123 1 7331 7331 0.69767 0.1345 1 445080 + 64062 24003 42614 43576 74837 74837 0.07278014985217851 TGPTRFFLF 9 Unmodified _TGPTRFFLF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2926635742188 2 543.292559 1084.57057 0.30566 0.00016606 -0.18179 -9.8765E-05 0.12387 6.7298E-05 543.2923767107985 83.359 0.57456 83.423 83.157 83.731 0.063171 80 21 5 0 0 0 0.024189 3 46021 46021;46120;46226 59.368 23.324 1 843780000 64063 481 42615 43577 74838;74839;74840 74838 0.03166350685501129 TGPTRFFLF 9 Unmodified _TGPTRFFLF_ 0 0 0 ENSG00000013588|ENST00000014914|GPRC5A;ENST00000537783.1_1_12:13044524-13062212:+|nuORF ENSG00000013588|ENST00000014914|GPRC5A ENSG00000013588|ENST00000014914|GPRC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.29296875 2 543.292559 1084.57057 0.60719 0.00032988 -0.86614 -0.00047057 -0.25895 -0.00014068 543.2920366180065 98.597 0.27101 92.422 92.28 92.551 -6.1757 90 19 7 0 0 0 0.011291 2 65351 65351;65502 76.825 32.418 1 5415400000 64064 481 42615 43577 74841;74842 74841 0.03166350685501129 TGPVPAKT 8 Unmodified _TGPVPAKT_ 0 0 0 REV__nc|ENSG00000165283|Q9UJZ1-2|STOML2 REV__nc|ENSG00000165283|Q9UJZ1-2|STOML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.7251892089844 2 385.723978 769.433404 0.5203 0.00020069 2.2004 0.00084875 2.7207 0.0010494 385.7249686930759 65.067 0.40661 65.067 64.854 65.261 7.6294E-06 30 19 2 0 0 0 0.81007 1 35668 35668 0.6015 0 1 3974600 + 64065 22001 42616 43578 74843 74843 0.03946441805953782 TGPYVEIYL 9 Unmodified _TGPYVEIYL_ 0 0 0 REV__nc|ENSG00000166452|Q9NQ31-3|AKIP1 REV__nc|ENSG00000166452|Q9NQ31-3|AKIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7763061523438 2 527.776408 1053.53826 0.70685 0.00037306 -0.86108 -0.00045446 -0.15422 -8.1395E-05 527.7758132225946 81.177 0.66086 80.684 80.356 81.017 -0.49247 110 36 4 0 0 0 0.4887 1 44370 44370 12.532 12.532 1 24075000 + 64066 22123 42617 43579 74844 74844 0.013635184918257437 TGQCRDTSAGF 11 Unmodified _TGQCRDTSAGF_ 0 0 0 ENST00000582655.5_1_17:27237161-27237842:-|nuORF;ENST00000332830.8_2_17:27234686-27239753:-|nuORF;ENST00000577226.5_1_17:27237161-27239849:-|nuORF ENST00000582655.5_1_17:27237161-27237842:-|nuORF ENST00000582655.5_1_17:27237161-27237842:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7484130859375 2 571.748387 1141.48222 NaN NaN NaN NaN NaN NaN NaN 84.484 1 83.984 83.484 84.484 -0.49961 0 0 0 0.92234 1 46232 46232 6.2058 0.47393 1 64067 11875 42618 43580 74845 74845 -0.08286057687269022 TGQKRFDCDQC 11 Unmodified _TGQKRFDCDQC_ 0 0 0 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.7755126953125 2 650.774079 1299.5336 -0.026346 -1.7146E-05 -0.83268 -0.00054189 -0.85903 -0.00055904 650.7746518106928 104.33 0.018074 104.33 104.32 104.34 0 7 4 2 0 0 0 0.7326 1 57441 57441 1.1933 0.735 1 2105900 64068 10039 42619 43581 74846 74846 -0.104180569848495 TGQLPYSNI 9 Unmodified _TGQLPYSNI_ 0 0 0 CUX1-BRAF|1|fusion;CUX1-BRAF|2|fusion;CUX1-BRAF|4|fusion;CUX1-BRAF|5|fusion;CUX1-BRAF|3|fusion;ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENST00000445336.2_1_X:74804463-74804925:+|nuORF;ENSG00000157764|ENST00000646891|BRAF CUX1-BRAF|1|fusion;ENST00000445336.2_1_X:74804463-74804925:+|nuORF;ENSG00000157764|ENST00000646891|BRAF ENST00000445336.2_1_X:74804463-74804925:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7577514648438 2 496.756007 991.497461 0.8289 0.00041176 1.8082 0.00089821 2.6371 0.00131 496.7568266654326 45.661 0.26529 40.706 40.598 40.863 -4.9549 29 17 2 0 0 0 0.11784 1 28064 28064 31.268 0.6318 1 11423000 64069 224;13455;6537 42620 43582 74847 74847 0.001371771722460835 TGQPHKSLSF 10 Unmodified _TGQPHKSLSF_ 0 0 0 REV__ENSG00000176261|ENST00000468695|ZBTB8OS REV__ENSG00000176261|ENST00000468695|ZBTB8OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7628784179688 2 551.288005 1100.56146 0.87937 0.00048478 -1.0699 -0.00058982 -0.19052 -0.00010503 551.2875709549076 49.935 0.22162 49.542 49.451 49.672 -0.3923 17 10 2 0 0 0 0.66569 1 26939 26939 6.7232 0.51738 1 2617700 + 64070 22921 42621 43583 74848 74848 0.015199573291738488 TGRGPWWKF 9 Unmodified _TGRGPWWKF_ 0 0 0 REV__ENST00000436587.6_1_7:7283538-7283649:+|nuORF REV__ENST00000436587.6_1_7:7283538-7283649:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.8668212890625 3 378.866293 1133.57705 NaN NaN NaN NaN NaN NaN NaN 46.77 1 41.69 41.19 42.19 -5.0805 0 0 0 0.26667 1 28954 28954 24.991 14.092 1 + 64071 27035 42622 43584 74849 74849 0.015602886368924374 TGRQLPLTL 9 Unmodified _TGRQLPLTL_ 0 0 0 REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.803466796875 2 499.803291 997.59203 0.4469 0.00022336 0.36933 0.00018459 0.81622 0.00040795 499.8031621802648 50.789 0.20073 50.375 50.258 50.459 -0.41351 21 9 3 0 0 0 0.20428 1 27360 27360 22.736 2.3217 1 1789600 + 64072 25053 42623 43585 74850 74850 0.09313735714226823 TGRQLPLTL 9 Unmodified _TGRQLPLTL_ 0 0 0 REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 499.803291 997.59203 0.4469 0.00022336 0.36933 0.00018459 0.81622 0.00040795 499.8031621802648 50.789 0.20073 50.375 50.258 50.459 -0.41351 -0.027812 8.8633E-05 NaN 22.736 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1789600 + 64073 25053 42623 43585 0.09313735714226823 TGRQLPLTL 9 Unmodified _TGRQLPLTL_ 0 0 0 REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF REV__ENST00000263997.10_1_16:68332069-68332321:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 499.803291 997.59203 1.177 0.00058829 0.11287 5.6415E-05 1.2899 0.00064471 499.803208808101 50.479 0.1638 50.431 50.291 50.454 -0.048828 0.027812 -0.00016772 NaN 22.736 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 600540 + 64074 25053 42623 43585 0.09313735714226823 TGRTAWPV 8 Unmodified _TGRTAWPV_ 0 0 0 ENST00000558588.5_1_15:40581558-40583812:-|nuORF ENST00000558588.5_1_15:40581558-40583812:-|nuORF ENST00000558588.5_1_15:40581558-40583812:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2408752441406 2 444.240327 886.466101 0.27067 0.00012024 0.75019 0.00033326 1.0209 0.00045351 444.24063968101825 55.454 0.19815 55.385 55.278 55.477 -0.068737 16 9 2 0 0 0 0.80383 1 30135 30135 4.3292 0.38484 1 6378000 64075 15281 42624 43586 74851 74851 0.018326489288028824 TGRTAWPV 8 Unmodified _TGRTAWPV_ 0 0 0 ENST00000558588.5_1_15:40581558-40583812:-|nuORF ENST00000558588.5_1_15:40581558-40583812:-|nuORF ENST00000558588.5_1_15:40581558-40583812:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.240327 886.466101 -0.35356 -0.00015706 2.5324 0.001125 2.1788 0.00096791 444.2416405442003 55.342 0.19575 55.342 55.241 55.437 0 -0.021788 0.0012258 NaN 4.3292 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1120400 64076 15281 42624 43586 0.018326489288028824 TGRWLAKRER 10 Unmodified _TGRWLAKRER_ 0 0 0 REV__ENST00000374884.2_2_X:62570875-62571106:-|nuORF REV__ENST00000374884.2_2_X:62570875-62571106:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8698120117188 2 636.86782 1271.72109 0.50673 0.00032272 0.23688 0.00015086 0.74361 0.00047358 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 249 65 6 0 0 0 0.67459 1 44309 44309 5.7319 5.7319 1 1280500000 + 64077 26194 42625 43587 74852 74852 0.09609510397012855 TGRYPNQI 8 Unmodified _TGRYPNQI_ 0 0 0 REV__ENSG00000173442|ENST00000309295|EHBP1L1 REV__ENSG00000173442|ENST00000309295|EHBP1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2494812011719 2 474.748516 947.482479 0.37544 0.00017824 -0.58774 -0.00027903 -0.21229 -0.00010079 474.7481823278113 68.519 0.34835 68.519 68.35 68.698 0 37 15 3 0 0 0 0.80143 1 38171 38171 5.7604 0 1 1378300 + 64078 22730 42626 43588 74853 74853 0.006637300948909797 TGSALPDPQ 9 Unmodified _TGSALPDPQ_ 0 0 0 ENSG00000173762|ENST00000312648|CD7 ENSG00000173762|ENST00000312648|CD7 ENSG00000173762|ENST00000312648|CD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 885.4304809570312 1 885.431238 884.423961 0.060423 5.35E-05 -0.9446 -0.00083638 -0.88418 -0.00078288 885.4301710454353 35.426 0.33117 31.233 31.094 31.425 -4.1928 26 20 2 0 0 0 0.16226 2 20641 20510;20641 26.884 7.6267 1 6472800 64079 8361 42627 43589 74854;74855 74855 -0.022873712702448756 TGSDRFYSP 9 Unmodified _TGSDRFYSP_ 0 0 0 REV__ENSG00000214842|ENST00000399080|RAD51AP2 REV__ENSG00000214842|ENST00000399080|RAD51AP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7525634765625 2 515.235439 1028.45632 -0.46082 -0.00023743 1.0126 0.00052175 0.55182 0.00028432 515.2354009475991 34.328 0.25114 34.328 34.226 34.478 0 15 12 2 0 0 0 0.19891 1 18111 18111 7.2892 0 1 2019900 + 64080 24325 42628 43590 74856 74856 -0.05676583867216323 TGSETKITY 9 Unmodified _TGSETKITY_ 0 0 0 nc|ENSG00000174197|Q8IWI9-3|MGA;nc|ENSG00000174197|Q8IWI9|MGA;ENSG00000174197|ENST00000703841|MGA;ENST00000566288.1_1_15:42040980-42042834:+|nuORF nc|ENSG00000174197|Q8IWI9-3|MGA nc|ENSG00000174197|Q8IWI9-3|MGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2526245117188 2 500.253297 998.492041 -0.16851 -8.4299E-05 0.37813 0.00018916 0.20962 0.00010486 500.2534599603298 25.509 0.26853 25.509 25.366 25.634 0 18 12 2 0 0 0 0.078314 1 13068 13068 38.176 21.233 1 2069100 64081 8400 42629 43591 74857 74857 -0.007265464102374608 TGSIWIDLDL 10 Unmodified _TGSIWIDLDL_ 0 0 0 REV__ENST00000483551.6_1_15:69082217-69082433:-|nuORF REV__ENST00000483551.6_1_15:69082217-69082433:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.3427124023438 2 566.797872 1131.58119 1.1998 0.00068006 -1.172 -0.00066426 0.027865 1.5794E-05 566.7972822070597 87.43 0.70729 81.254 81.075 81.782 -6.1757 54 38 2 0 0 0 0.22327 1 57954 57954 13.906 3.8321 1 22164000 + 64082 27743 42630 43592 74858 74858 0.02066288549303863 TGSMLWSTVF 10 Unmodified _TGSMLWSTVF_ 0 0 0 REV__ENSG00000156162|ENST00000414645|DPY19L4 REV__ENSG00000156162|ENST00000414645|DPY19L4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8495483398438 3 376.85132 1127.53213 NaN NaN NaN NaN NaN NaN NaN 17.385 1 17.385 16.885 17.885 0 0 0 0 1.0004 1 8561 8561 0.62683 0 1 + 64083 21316 42631 43593 74859 74859 -0.02653323011327302 TGSPLAARY 9 Unmodified _TGSPLAARY_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2504577636719 2 468.250892 934.48723 NaN NaN NaN NaN NaN NaN NaN 31.766 1 31.766 31.266 32.266 0 0 0 0 0.43483 1 16561 16561 18.146 5.1039 1 64084 3102 42632 43594 74860 74860 0.017366142376545213 TGSRSMGVVPC 11 Unmodified _TGSRSMGVVPC_ 0 0 0 REV__nc|ENSG00000130294|Q12756|KIF1A REV__nc|ENSG00000130294|Q12756|KIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1764526367188 3 365.17581 1092.5056 0.29174 0.00010654 1.537 0.00056129 1.8288 0.00066783 365.1765431762078 39.918 0.25661 39.923 39.811 40.068 0.0050545 31 11 4 0 0 0 0.71618 1 21292 21292 1.1098 0 1 6329000 + 64085 19712 42633 43595 74861 74861 -0.03695335174279535 TGSVYPNDAWR 11 Unmodified _TGSVYPNDAWR_ 0 0 0 REV__ENSG00000184985|ENST00000507866|SORCS2 REV__ENSG00000184985|ENST00000507866|SORCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.53564453125 3 422.53516 1264.58365 -0.46134 -0.00019493 0.18624 7.8694E-05 -0.2751 -0.00011624 422.5353012415348 25.318 0.24236 25.318 25.184 25.427 0 29 11 4 0 0 0 0.66428 1 12954 12954 3.8459 0.25885 1 3438800 + 64086 23457 42634 43596 74862 74862 -0.038058629930674215 TGTFPETPMV 10 Unmodified _TGTFPETPMV_ 0 0 0 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.5077514648438 3 360.507442 1078.5005 0.499 0.00017989 0.88921 0.00032057 1.3882 0.00050046 360.5077087242832 83.218 0.35736 82.72 82.557 82.914 -0.49751 32 13 3 0 0 0 0.67033 1 45544 45544 3.3196 0.24738 1 2315500 64087 562 42635 43597 74863 74863 -0.035613157652505834 TGTFPETPMV 10 Unmodified _TGTFPETPMV_ 0 0 0 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 360.507442 1078.5005 0.499 0.00017989 0.88921 0.00032057 1.3882 0.00050046 360.5077087242832 83.218 0.35736 82.72 82.557 82.914 -0.49751 0.039322 -8.2458E-05 NaN 3.3196 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2315500 64088 562 42635 43597 -0.035613157652505834 TGTFPETPMV 10 Unmodified _TGTFPETPMV_ 0 0 0 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4;ENSG00000026652|ENST00000320285|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 360.507442 1078.5005 1.0347 0.00037302 1.2357 0.00044547 2.2704 0.00081848 360.5079727959955 82.58 0.25847 82.642 82.529 82.788 0.062004 -0.039322 0.00029224 NaN 3.3196 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1001200 64089 562 42635 43597 -0.035613157652505834 TGTGTLLLI 9 Unmodified _TGTGTLLLI_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1 nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MSMS AL20221201_MKP_PDAC_01 4 444.7737121582031 2 444.773668 887.532783 NaN NaN NaN NaN NaN NaN NaN 72.457 1 66.282 65.782 66.782 -6.1757 0 0 0 0.050352 1 47406 47406 57.471 6.6163 1 64090 639 42636 43598 74864 74864 0.08451839700069286 TGVEDKESW 9 Unmodified _TGVEDKESW_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7404174804688 2 525.740554 1049.46655 -0.1399 -7.355E-05 0.79745 0.00041925 0.65755 0.0003457 525.7407612502145 41.288 0.36237 41.288 41.1 41.462 0 54 17 5 0 0 0 0.10734 1 22194 22194 32.305 0 1 24666000 64091 7097 42637 43599 74865 74865 -0.05620020932656189 TGVPTALPA 9 Unmodified _TGVPTALPA_ 0 0 0 ENST00000216044.9_1_22:39129475-39129565:+|nuORF ENST00000216044.9_1_22:39129475-39129565:+|nuORF ENST00000216044.9_1_22:39129475-39129565:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.467041015625 1 826.466895 825.459619 -0.10881 -8.9929E-05 -0.983 -0.00081242 -1.0918 -0.00090235 826.466026919763 70 0.58075 70 69.797 70.377 0 162 59 3 0 0 0 0.095405 1 39139 39139 34.102 0 1 43938000 64092 11001 42638 43600 74866 74866 0.039907109774162564 TGVPVIELSK 10 Unmodified _TGVPVIELSK_ 0 0 0 REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF REV__ENST00000579728.5_1_17:45885659-45892067:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7827758789062 2 521.810782 1041.60701 1.0046 0.0005242 -1.7517 -0.00091406 -0.74712 -0.00038986 521.8098338095004 57.2 0.38555 51.173 50.971 51.356 -6.0275 34 21 2 0 0 0 0.23412 1 36446 36446 2.9952 1.151 1 34380000 + 64093 16979 42639 43601 74867 74867 0.0878718279154782 TGVSAVQFGNS 11 Unmodified _TGVSAVQFGNS_ 0 0 0 nc|ENSG00000104064|Q06547-4|GABPB1;nc|ENSG00000104064|Q06547-3|GABPB1;ENSG00000104064|ENST00000380877|GABPB1;nc|ENSG00000104064|Q06547|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 nc|ENSG00000104064|Q06547-4|GABPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7620239257812 2 533.76182 1065.50909 0.52612 0.00028082 0.81795 0.00043659 1.3441 0.00071741 533.7628231477823 50.021 0.31981 50.021 49.834 50.154 0 22 14 2 0 0 0 0.13335 1 27573 27573 38.615 9.5332 1 4583500 64094 2174 42640 43602 74868 74868 -0.021046258044179922 TGVVRAFGH 9 Unmodified _TGVVRAFGH_ 0 0 0 REV__ENST00000487433.6_1_13:50070383-50071245:+|nuORF REV__ENST00000487433.6_1_13:50070383-50071245:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2368774414062 2 472.259051 942.503549 -0.24522 -0.00011581 -2.6502 -0.0012516 -2.8954 -0.0013674 472.2581445047204 25.9 0.14589 25.9 25.799 25.945 0 8 6 2 0 0 0 0.16785 1 13258 13258 11.64 0 1 432480 + 64095 27826 42641 43603 74869 74869 0.02999740194422884 TGVYLKEMK 9 Unmodified _TGVYLKEMK_ 0 0 0 ENST00000460734.5_1_21:46553558-46554689:+|nuORF ENST00000460734.5_1_21:46553558-46554689:+|nuORF ENST00000460734.5_1_21:46553558-46554689:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7921142578125 2 534.791535 1067.56852 NaN NaN NaN NaN NaN NaN NaN 100.3 1 100.26 99.763 100.76 -0.036301 0 0 0 0.84892 1 55713 55713 1.6526 0.17072 1 64096 13645 42642 43604 74870 74870 0.037435538853969774 TGVYTGAWF 9 Unmodified _TGVYTGAWF_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2401428222656 2 501.239993 1000.46543 -0.10222 -5.1235E-05 0.64643 0.00032402 0.54422 0.00027278 501.2403548904841 30.505 0.37022 30.535 30.3 30.67 0.030106 18 16 2 0 0 0 0.5029 1 16014 16014 7.2892 0 1 921630 64097 10386 42643 43605 74871 74871 -0.03478190510918466 TGWFDNQF 8 Unmodified _TGWFDNQF_ 0 0 0 REV__ENSG00000139324|ENST00000266712|TMTC3 REV__ENSG00000139324|ENST00000266712|TMTC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7411193847656 2 507.719424 1013.4243 1.0245 0.00052017 -1.0337 -0.00052481 -0.009127 -4.634E-06 507.71839355765144 54.315 0.28869 54.315 54.173 54.462 0 29 12 3 0 0 0 8.7369 1 30173 30173 13.508 0.97634 1 3187900 + 64098 20402 42644 43606 74872 74872 -0.08187951550382877 TGWGIENVK 9 Unmodified _TGWGIENVK_ 0 0 0 nc|ENSG00000114948|O75077-2|ADAM23 nc|ENSG00000114948|O75077-2|ADAM23 nc|ENSG00000114948|O75077-2|ADAM23 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7793579101562 2 502.263999 1002.51345 0.95351 0.00047891 -0.59185 -0.00029727 0.36165 0.00018165 502.26395616166747 42.089 0.29143 37.405 37.186 37.477 -4.6846 24 17 2 0 0 0 0.19205 1 25226 25226 6.2058 0 1 5802800 64099 16133 42645 43607 74873 74873 0.012288834091350509 TGYELRPDRRS 11 Unmodified _TGYELRPDRRS_ 0 0 0 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 ENSG00000134569|ENST00000378623|LRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.5700073242188 3 450.568863 1348.68476 -0.11347 -5.1124E-05 2.5643 0.0011554 2.4509 0.0011043 450.5699951213418 25.205 0.19633 25.205 25.087 25.283 0 13 9 2 0 0 0 0.73992 1 12916 12916 0.50596 0 1 622200 64100 4619 42646 43608 74874 74874 0.02436588709656462 TGYFMQVAHL 10 Unmodified _TGYFMQVAHL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000508032.5_1_4:24529549-24538851:-|nuORF;ENST00000510645.5_1_4:24519211-24534570:-|nuORF;ENST00000512903.1_1_4:24529549-24534804:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MSMS AL20221201_MKP_PDAC_01 4 389.5284118652344 3 389.526948 1165.55902 NaN NaN NaN NaN NaN NaN NaN 45.1 1 40.248 39.748 40.748 -4.852 0 0 0 0.91523 1 27628 27628 3.8763 0.80407 1 64101 2658 42647 43609 74875 74875 -0.017142144001127235 TGYGGYEEY 9 Unmodified _TGYGGYEEY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7061157226562 2 519.70618 1037.39781 0.7793 0.000405 -0.41234 -0.0002143 0.36695 0.00019071 519.7059400298914 36.402 0.27817 36.402 36.249 36.527 0 43 13 4 0 0 0 0.095405 2 19261 19261;19368 34.102 21.06 1 25673000 64102 7918 42648 43610 74876;74877 74876 -0.11939685232368902 TGYGGYEEY 9 Unmodified _TGYGGYEEY_ 0 0 0 ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF ENSG00000169813|ENST00000682386|HNRNPF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.706787109375 2 519.70618 1037.39781 0.95572 0.00049669 -0.51981 -0.00027015 0.43591 0.00022655 519.7057490687636 42.396 0.38568 37.712 37.531 37.917 -4.6846 66 25 3 0 0 0 0.10734 2 25514 25514;25645 32.305 17.467 1 48866000 64103 7918 42648 43610 74878;74879 74878 -0.11939685232368902 TGYQRQLLY 9 Unmodified _TGYQRQLLY_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2553100585938 2 571.303655 1140.59276 0.17711 0.00010118 -1.4516 -0.00082928 -1.2745 -0.0007281 571.3018693075028 48.972 0.32219 48.972 48.852 49.174 0 24 15 2 0 0 0 0.17718 1 26947 26947 10.074 4.3421 1 4776000 + 64104 145 42649 43611 74880 74880 0.02808530363290629 TGYQRQLLY 9 Unmodified _TGYQRQLLY_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 CON__ENSEMBL:ENSBTAP00000024146 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.303655 1140.59276 0.6856 0.00039169 -0.80514 -0.00045998 -0.11954 -6.8291E-05 571.3025884407823 49.254 0.18747 48.882 48.755 48.943 -0.37172 -0.044795 0.00018405 NaN 10.074 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1300900 + 64105 145 42649 43611 0.02808530363290629 TGYYDQEIY 9 Unmodified _TGYYDQEIY_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1;nc|ENSG00000115524|O75533-2|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.247802734375 2 576.248212 1150.48187 0.2629 0.00015149 0.22352 0.0001288 0.48641 0.0002803 576.2479579167098 46.994 0.26763 46.994 46.858 47.125 0 34 12 3 0 0 0 0.03568 2 25668 25668;25777 52.268 36.421 1 10809000 64106 3132 42650 43612 74881;74882 74881 -0.08735154135456469 THAKLLLNF 9 Unmodified _THAKLLLNF_ 0 0 0 REV__nc|ENSG00000172159|A2A2Y4-3|FRMD3 REV__nc|ENSG00000172159|A2A2Y4-3|FRMD3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8455200195312 3 352.878198 1055.61277 1.4345 0.00050619 -3.6214 -0.0012779 -2.187 -0.00077174 352.8766146110454 33.179 0.22119 29.323 29.259 29.48 -3.8562 28 13 3 0 0 0 0.19613 1 19110 19110 4.897 0 1 20610000 + 64107 22629 42651 43613 74883 74883 0.08718326093912765 THARSIEALHT 11 Unmodified _THARSIEALHT_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1235.473388671875 1 1235.64911 1234.64183 -0.44142 -0.00054544 0.57149 0.00070617 0.13008 0.00016073 1235.6498405295674 41.626 0.26503 41.32 41.168 41.433 -0.30682 15 11 2 0 0 0 0.30577 1 22041 22041 1.1933 0.66858 1 15500000 + 64108 23848 42652 43614 74884 74884 0.03389818652226495 THCTFWTRL 9 Unmodified _THCTFWTRL_ 0 0 0 ENST00000468403.1_1_1:153752380-153752413:+|nuORF ENST00000468403.1_1_1:153752380-153752413:+|nuORF ENST00000468403.1_1_1:153752380-153752413:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8583068847656 3 388.858809 1163.5546 NaN NaN NaN NaN NaN NaN NaN 43.14 1 43.125 42.625 43.625 -0.015667 0 0 0 0.7453 1 23117 23117 4.897 0 1 64109 13810 42653 43615 74885 74885 -0.020636788230603997 THDTCSEDTY 10 Unmodified _THDTCSEDTY_ 0 0 0 ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A ENSG00000125386|ENST00000637812|FAM193A ENSG00000125386|ENST00000637812|FAM193A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.1448059082031 3 391.145121 1170.41353 -0.53884 -0.00021076 0.21389 8.3661E-05 -0.32495 -0.0001271 391.1451768282123 15.932 0.1024 15.918 15.839 15.942 -0.014067 53 35 2 0 0 0 0.72607 1 7828 7828 0 0 1 621140 64110 3845 42654 43616 74886 74886 -0.16485766777623212 THDVVAGH 8 Unmodified _THDVVAGH_ 0 0 0 REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.206787109375 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 21.392 1 21.392 20.892 21.892 0 0 0 0 0.97444 1 10821 10821 0.79363 0 1 + 64111 21068 42655 43617 74887 74887 -0.02540801001998716 THEFVTLLI 9 Unmodified _THEFVTLLI_ 0 0 0 REV__ENST00000313146.10_1_1:156697916-156698111:-|nuORF REV__ENST00000313146.10_1_1:156697916-156698111:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.8046264648438 2 536.8055 1071.59645 0.45089 0.00024204 0.21293 0.0001143 0.66382 0.00035634 536.8054678554762 74.727 0.30717 74.727 74.582 74.89 0 32 13 3 0 0 0 0.54444 1 41652 41652 4.756 0 1 2834500 + 64112 25435 42656 43618 74888 74888 0.06351200137169144 THFIENWSE 9 Unmodified _THFIENWSE_ 0 0 0 ENST00000319332.9_1_3:189675768-189681790:-|nuORF ENST00000319332.9_1_3:189675768-189681790:-|nuORF ENST00000319332.9_1_3:189675768-189681790:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7619018554688 2 581.76182 1161.50909 0.41574 0.00024186 0.057102 3.322E-05 0.47284 0.00027508 581.7619261349977 37.627 0.46571 37.644 37.394 37.859 0.01704 38 22 2 0 0 0 0.45045 1 20046 20046 10.074 0 1 5903600 64113 11757 42657 43619 74889 74889 -0.06520625804432711 THFPICIF 8 Unmodified _THFPICIF_ 0 0 0 ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 488.7372436523438 2 489.249306 976.484059 0.49113 0.00024029 1.7931 0.00087728 2.2843 0.0011176 489.25008830591923 66.788 0.048309 60.612 60.58 60.628 -6.1757 4 2 2 0 0 0 8.7369 1 43450 43450 20.871 6.0329 1 6468900 64114 2353 42658 43620 74890 74890 -0.005123521407085718 THFTVKTRK 9 Unmodified _THFTVKTRK_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5201721191406 3 373.220735 1116.64038 -0.56211 -0.00020979 0.80236 0.00029946 0.24025 8.9667E-05 373.2208976087801 18.618 0.23049 18.641 18.553 18.784 0.023106 64 31 3 0 0 0 0.21473 1 9420 9420 0.96228 0 1 1525400 64115 1392 42659 43621 74891 74891 0.08672229354147021 THGALHGL 8 Unmodified _THGALHGL_ 0 0 0 ENSG00000135090|ENST00000392533|TAOK3;ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENSG00000135090|ENST00000392533|TAOK3 ENSG00000135090|ENST00000392533|TAOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2200927734375 2 403.219395 804.424236 -0.13909 -5.6084E-05 1.1787 0.00047529 1.0396 0.0004192 403.2197067112023 29.32 0.3923 29.35 29.009 29.402 0.030106 25 16 2 0 0 0 0.80232 1 15291 15291 5.2307 2.6532 1 5094800 64116 4669 42660 43622 74892 74892 0.014200932402900435 THGALHGL 8 Unmodified _THGALHGL_ 0 0 0 ENSG00000135090|ENST00000392533|TAOK3;ENST00000537305.5_1_12:118674470-118681279:-|nuORF ENSG00000135090|ENST00000392533|TAOK3 ENSG00000135090|ENST00000392533|TAOK3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 403.219395 804.424236 -0.40532 -0.00016343 2.7459 0.0011072 2.3406 0.00094377 403.22005533140543 29.464 0.32618 29.464 29.202 29.528 0 0.057086 0.00071387 NaN 5.2307 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2227800 64117 4669 42660 43622 0.014200932402900435 THGPDRSRRH 10 Unmodified _THGPDRSRRH_ 0 0 0 REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF REV__ENST00000440097.5_1_3:45636669-45636975:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8798828125 3 406.878143 1217.6126 NaN NaN NaN NaN NaN NaN NaN 8.0594 1 8.0746 7.5746 8.5746 0.015238 0 0 0 0.99388 1 4019 4019 0.56317 0 1 + 64118 27072 42661 43623 74893 74893 0.012497191466081858 THHCTLAG 8 Unmodified _THHCTLAG_ 0 0 0 REV__ENSG00000187566|ENST00000340650|NHLRC1 REV__ENSG00000187566|ENST00000340650|NHLRC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.7564392089844 2 420.195062 838.375571 0.19928 8.3738E-05 1.2739 0.00053528 1.4732 0.00061901 420.1954906487026 67.562 0.30874 67.562 67.366 67.675 0 25 14 2 0 0 0 8.7369 1 37733 37733 2.5775 0 1 2337700 + 64119 23643 42662 43624 74894 74894 -0.05008143391114572 THHHHHHLAA 10 Unmodified _THHHHHHLAA_ 0 0 0 REV__ENSG00000185668|ENST00000373012|POU3F1 REV__ENSG00000185668|ENST00000373012|POU3F1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2924194335938 2 599.292279 1196.57001 NaN NaN NaN NaN NaN NaN NaN 17.839 1 17.853 17.353 18.353 0.013865 0 0 0 1.0061 1 8902 8902 0 0 1 + 64120 23518 42663 43625 74895 74895 -0.020416311909457363 THHLDELAHL 10 Unmodified _THHLDELAHL_ 0 0 0 REV__ENSG00000150750|ENST00000280325|POU2AF2 REV__ENSG00000150750|ENST00000280325|POU2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8730163574219 3 395.871883 1184.59382 0.025575 1.0124E-05 3.4209 0.0013542 3.4465 0.0013644 395.87315061744926 23.44 0.19843 23.452 23.37 23.568 0.012394 13 8 2 0 0 0 0.35903 1 11949 11949 20.581 7.7083 1 5263600 + 64121 21035 42664 43626 74896 74896 0.008907447321689688 THHLDELAHL 10 Unmodified _THHLDELAHL_ 0 0 0 REV__ENSG00000150750|ENST00000280325|POU2AF2 REV__ENSG00000150750|ENST00000280325|POU2AF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8736572265625 3 395.871883 1184.59382 NaN NaN NaN NaN NaN NaN NaN 35.406 1 35.431 34.931 35.931 0.024967 0 0 0 0.7417 1 18715 18715 12.873 3.8964 1 + 64122 21035 42664 43626 74897 74897 0.008907447321689688 THHLDELAHL 10 Unmodified _THHLDELAHL_ 0 0 0 REV__ENSG00000150750|ENST00000280325|POU2AF2 REV__ENSG00000150750|ENST00000280325|POU2AF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 395.871883 1184.59382 0.025575 1.0124E-05 3.4209 0.0013542 3.4465 0.0013644 395.87315061744926 23.44 0.19843 23.452 23.37 23.568 0.012394 0.16201 7.9757E-05 NaN 20.581 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 5263600 + 64123 21035 42664 43626 0.008907447321689688 THHLDELAHL 10 Unmodified _THHLDELAHL_ 0 0 0 REV__ENSG00000150750|ENST00000280325|POU2AF2 REV__ENSG00000150750|ENST00000280325|POU2AF2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 395.871883 1184.59382 0.22973 9.0945E-05 2.9624 0.0011727 3.1921 0.0012637 395.8729673922807 26.002 0.42414 23.051 22.857 23.281 -2.9511 -0.23974 -0.00046476 NaN 20.581 75 27 4 NaN NaN NaN NaN 0 NaN NaN 0 62126000 + 64124 21035 42664 43626 0.008907447321689688 THIRLHQRF 9 Unmodified _THIRLHQRF_ 0 0 0 REV__nc|ENSG00000167377|P17027-2|ZNF23 REV__nc|ENSG00000167377|P17027-2|ZNF23 MSMS AL20221201_MKP_PDAC_01 4 403.23291015625 3 403.231746 1206.67341 NaN NaN NaN NaN NaN NaN NaN 6.4952 1 4.0133 3.5133 4.5133 -2.482 0 0 0 0.85261 1 3284 3284 1.1933 0 1 + 64125 22206 42665 43627 74898 74898 0.07833856196816669 THIYIFYIF 9 Unmodified _THIYIFYIF_ 0 0 0 ENST00000295951.7_1_3:57913451-57913754:+|nuORF ENST00000295951.7_1_3:57913451-57913754:+|nuORF ENST00000295951.7_1_3:57913451-57913754:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2172546386719 3 406.21822 1215.63283 0.15666 6.3636E-05 -1.0881 -0.000442 -0.93144 -0.00037837 406.21808638617506 68.203 0.16623 68.203 68.099 68.266 0 11 7 2 0 0 0 0.58865 1 38027 38027 1.0715 0.29493 1 295080 64126 11501 42666 43628 74899 74899 0.03364077033847934 THKKKKLT 8 Unmodified _THKKKKLT_ 0 0 0 REV__ENSG00000065485|ENST00000316218|PDIA5 REV__ENSG00000065485|ENST00000316218|PDIA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.3215942382812 2 492.321651 982.62875 -0.3351 -0.00016498 0.34328 0.000169 0.0081747 4.0246E-06 492.3216578015674 103.15 0.40366 103.1 102.95 103.36 -0.047928 36 16 3 0 0 0 0.80992 1 57256 57256 0.69038 0 1 2287600 + 64127 17377 42667 43629 74900 74900 0.136740323308004 THKLLGGW 8 Unmodified _THKLLGGW_ 0 0 0 ENST00000561463.1_1_15:102312101-102312521:+|nuORF ENST00000561463.1_1_15:102312101-102312521:+|nuORF ENST00000561463.1_1_15:102312101-102312521:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2592468261719 2 456.25852 910.502486 0.13493 6.1562E-05 -0.489 -0.00022311 -0.35407 -0.00016155 456.25824610922217 26.04 0.27259 23.089 22.926 23.199 -2.9511 25 16 2 0 0 0 0.46494 1 14259 14259 38.151 38.151 1 8000000 64128 15324 42668 43630 74901 74901 0.043655258255284934 THKVKKTC 8 Unmodified _THKVKKTC_ 0 0 0 ENST00000504490.2_1_4:113277971-113278631:+|nuORF ENST00000504490.2_1_4:113277971-113278631:+|nuORF ENST00000504490.2_1_4:113277971-113278631:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7711791992188 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 0.8331 1 0.75981 0.25981 1.2598 -0.073289 0 0 0 0.97444 1 417 417 0.69038 0.69038 1 64129 14497 42669 43631 74902 74902 0.053298376365887634 THLAYTPS 8 Unmodified _THLAYTPS_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.4390869140625 1 889.441409 888.434132 -0.15896 -0.00014138 1.1564 0.0010285 0.99744 0.00088717 889.4422921801826 46.257 0.28084 41.302 41.148 41.429 -4.9549 25 18 2 0 0 0 0.19792 1 28515 28515 70.716 10.326 1 8367500 64130 2358 42670 43632 74903 74903 -0.014547635450071539 THLDCMYVV 9 Unmodified _THLDCMYVV_ 0 0 0 REV__nc|ENSG00000102007|Q04941-2|PLP2 REV__nc|ENSG00000102007|Q04941-2|PLP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.771728515625 2 540.74627 1079.47799 0.54372 0.00029402 -1.4058 -0.00076016 -0.86204 -0.00046615 540.7456417501256 59.875 0.16626 59.875 59.796 59.962 0 11 7 2 0 0 0 0.19613 1 33422 33422 12.532 2.3482 1 1572000 + 64131 18214 42671 43633 74904 74904 -0.05857238434532519 THLDLRHCE 9 Unmodified _THLDLRHCE_ 0 0 0 nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL nc|ENSG00000100399|Q6NUI6-2|CHADL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.7957153320312 2 562.26929 1122.52403 1.6361 0.00091992 2.0191 0.0011353 3.6552 0.0020552 562.7719836983036 64.148 0.52856 57.972 57.802 58.331 -6.1757 63 27 3 0 0 0 0.18882 1 41591 41591 10.824 3.5347 1 9317800 64132 1815 42672 43634 74905 74905 -0.03233457208079926 THLLVSIEL 9 Unmodified _THLLVSIEL_ 0 0 0 REV__ENST00000281543.5_1_4:44680697-44682542:+|nuORF REV__ENST00000281543.5_1_4:44680697-44682542:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2867431640625 2 512.8055 1023.59645 0.34362 0.00017621 0.25818 0.00013239 0.60179 0.0003086 512.805557581309 64.808 0.30103 64.323 64.169 64.47 -0.48512 23 13 2 0 0 0 0.209 1 35321 35321 7.2892 7.2892 1 1293900 + 64133 25199 42673 43635 74906 74906 0.08559200137142398 THLNTNQSF 9 Unmodified _THLNTNQSF_ 0 0 0 REV__ENSG00000162086|ENST00000669516|ZNF75A REV__ENSG00000162086|ENST00000669516|ZNF75A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7534790039062 2 531.254163 1060.49377 -0.50876 -0.00027028 -2.0856 -0.001108 -2.5944 -0.0013783 531.253122266562 32.039 0.24356 32.039 31.94 32.184 0 18 11 2 0 0 0 0.18118 1 16691 16691 19.257 13.497 1 1295600 + 64134 21624 42674 43636 74907 74907 -0.034054926016324316 THLVIATF 8 Unmodified _THLVIATF_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.260986328125 2 451.260728 900.506903 -0.19409 -8.7586E-05 1.0852 0.00048969 0.89108 0.00040211 451.2611763136943 103.63 0.071442 103.58 103.55 103.62 -0.047928 4 2 2 0 0 0 0.80722 1 57565 57565 2.3027 1.5091 1 2738700 + 64135 22721 42675 43637 74908 74908 0.05266990248435377 THLVLLIKLL 10 Unmodified _THLVLLIKLL_ 0 0 0 REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF REV__ENST00000342756.9_1_4:57357643-57361536:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.8019409179688 3 388.268915 1161.78492 NaN NaN NaN NaN NaN NaN NaN 102.25 1 102.2 101.7 102.7 -0.045853 0 0 0 1.0061 1 56796 56796 0 0 1 + 64136 25725 42676 43638 74909 74909 0.2104947778143469 THMETDNKCF 10 Unmodified _THMETDNKCF_ 0 0 0 ENSG00000182272|ENST00000329962|B4GALNT4 ENSG00000182272|ENST00000329962|B4GALNT4 ENSG00000182272|ENST00000329962|B4GALNT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.171630859375 3 409.170724 1224.49034 0.8949 0.00036617 1.0498 0.00042955 1.9447 0.00079572 409.17109121043586 36.714 0.11822 32.43 32.371 32.49 -4.2835 9 6 2 0 0 0 0.66569 1 21426 21426 3.5871 0 1 7711100 64137 9042 42677 43639 74910 74910 -0.11292246762150171 THNIETFFI 9 Unmodified _THNIETFFI_ 0 0 0 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 ENSG00000164742|ENST00000297323|ADCY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.782470703125 2 561.284931 1120.55531 -0.5319 -0.00029855 0.0096922 5.4401E-06 -0.52221 -0.00029311 561.2849039150959 56.494 0.526 56.008 55.843 56.369 -0.48554 81 36 3 0 0 0 0.32871 1 30841 30841 15.847 0 1 63080000 64138 7237 42678 43640 74911 74911 -0.00014560902332050318 THNMDGFF 8 Unmodified _THNMDGFF_ 0 0 0 nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2 nc|ENSG00000111641|P46087-3|NOP2 nc|ENSG00000111641|P46087-3|NOP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7013549804688 2 484.700177 967.385802 0.26827 0.00013003 1.4667 0.00071092 1.735 0.00084096 484.7007801897011 76.689 0.55784 76.689 76.294 76.852 0 35 22 2 0 0 0 0.80676 1 42700 42700 2.5775 0 1 666080 64139 2802 42679 43641 74912 74912 -0.09919580456539734 THPVWSRYRC 10 Unmodified _THPVWSRYRC_ 0 0 0 REV__nc|ENSG00000121410|P04217-2|A1BG REV__nc|ENSG00000121410|P04217-2|A1BG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.5492248535156 3 435.548746 1303.62441 NaN NaN NaN NaN NaN NaN NaN 19.688 1 19.695 19.195 20.195 0.0078487 0 0 0 1.0024 1 10022 10022 0.13989 0 1 + 64140 19293 42680 43642 74913 74913 -0.015258001543998034 THQLCLLKWIS 11 Unmodified _THQLCLLKWIS_ 0 0 0 ENSG00000183654|ENST00000332432|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.9143981933594 3 447.916436 1340.72748 NaN NaN NaN NaN NaN NaN NaN 64.673 1 64.673 64.173 65.173 0 0 0 0 0.94037 1 36070 36070 2.2527 0.79761 1 64141 9173 42681 43643 74914 74914 0.07074267513553423 THQWSFPY 8 Unmodified _THQWSFPY_ 0 0 0 REV__nc|ENSG00000166444|P78524-3|DENND2B REV__nc|ENSG00000166444|P78524-3|DENND2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2450561523438 2 533.243067 1064.47158 0.38051 0.0002029 2.3369 0.0012461 2.7174 0.001449 533.2445715392867 27.696 0.28932 24.659 24.496 24.785 -3.0365 19 14 3 0 0 0 0.55032 1 15398 15398 30.225 2.596 1 7694100 + 64142 22119 42682 43644 74915 74915 -0.05807672279388498 THRQMLGSTE 10 Unmodified _THRQMLGSTE_ 0 0 0 nc|ENSG00000103168|Q15572-5|TAF1C;ENST00000564208.5_1_16:84212549-84215086:-|nuORF;nc|ENSG00000103168|Q15572-4|TAF1C;nc|ENSG00000103168|Q15572-2|TAF1C;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C;ENST00000564774.5_1_16:84212549-84214094:-|nuORF nc|ENSG00000103168|Q15572-5|TAF1C nc|ENSG00000103168|Q15572-5|TAF1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.280517578125 2 580.279854 1158.54516 0.68598 0.00039806 -0.5294 -0.0003072 0.15658 9.0859E-05 580.2801975589994 43.139 0.40845 38.374 38.21 38.618 -4.7648 89 28 5 0 0 0 0.28276 1 26229 26229 28.495 6.7479 1 65106000 64143 2108 42683 43645 74916 74916 -0.02777491899200868 THRRLHTPM 9 Unmodified _THRRLHTPM_ 0 0 0 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5417785644531 3 383.541703 1147.60328 0.57534 0.00022067 1.2947 0.00049658 1.8701 0.00071725 383.5422868141194 28.344 0.19492 28.282 28.173 28.368 -0.062159 12 7 2 0 0 0 0.2001 1 14639 14639 16.149 4.6544 1 5009500 64144 10626 42684 43646 74917 74917 0.03538234536722484 THRRLHTPM 9 Unmodified _THRRLHTPM_ 0 0 0 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 ENSG00000232382|ENST00000642057|OR5K1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 383.541703 1147.60328 0.13622 5.2245E-05 2.7986 0.0010734 2.9348 0.0011256 383.543365831562 28.267 0.12014 28.296 28.212 28.332 0.029564 -0.030153 0.00074145 NaN 16.149 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 834690 64145 10626 42684 43646 0.03538234536722484 THRRVNPIK 9 Unmodified _THRRVNPIK_ 0 0 0 REV__ENST00000481448.5_1_21:35897726-35897813:-|nuORF REV__ENST00000481448.5_1_21:35897726-35897813:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1797180175781 3 374.228113 1119.66251 -0.070087 -2.6229E-05 2.671 0.00099957 2.6009 0.00097334 374.2294215529487 32.947 0.25407 32.976 32.864 33.118 0.029743 18 10 3 0 0 0 0.21367 1 17274 17274 1.0715 0 1 1515600 + 64146 27693 42685 43647 74918 74918 0.10746453822548574 THRTDSRSFSF 11 Unmodified _THRTDSRSFSF_ 0 0 0 ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 447.8844299316406 3 447.54958 1339.62691 0.3281 0.00014684 0.16351 7.3181E-05 0.49162 0.00022002 447.54978001710964 62.727 0.25974 62.727 62.611 62.87 0 36 10 4 0 0 0 0.67922 1 34990 34990 5.0475 0.64137 1 4802000 64147 15184 42686 43648 74919 74919 -0.029316732157667502 THRTDSRSFSF 11 Unmodified _THRTDSRSFSF_ 0 0 0 ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5498962402344 3 447.54958 1339.62691 1.1357 0.00050827 0.24499 0.00010964 1.3807 0.00061791 447.5495810977146 89.922 0.60108 83.746 83.526 84.127 -6.1757 86 33 3 0 0 0 0.71036 1 59301 59301 2.8433 1.251 1 18495000 64148 15184 42686 43648 74920 74920 -0.029316732157667502 THRTDSRSFSF 11 Unmodified _THRTDSRSFSF_ 0 0 0 ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.550048828125 3 447.54958 1339.62691 0.82591 0.00036964 0.34065 0.00015246 1.1666 0.00052209 447.5497725515854 93.66 0.36433 87.484 87.272 87.636 -6.1757 79 21 5 0 0 0 0.67922 1 62040 62040 2.8433 0.93691 1 150720000 64149 15184 42686 43648 74921 74921 -0.029316732157667502 THRTDSRSFSF 11 Unmodified _THRTDSRSFSF_ 0 0 0 ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF ENST00000553009.5_1_12:54718935-54736154:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 447.54958 1339.62691 0.31219 0.00013972 0.78375 0.00035077 1.0959 0.00049049 447.5498298041896 63.192 0.25453 62.706 62.562 62.816 -0.48617 -0.01011 0.0004712 NaN 5.0475 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2497200 64150 15184 42686 43648 -0.029316732157667502 THRWELNNENT 11 Unmodified _THRWELNNENT_ 0 0 0 ENST00000460416.2_1_2:203914692-203914767:+|nuORF;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|31|1|sense;L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|65|2|sense;ENST00000357871.6_1_Y:14514177-14532211:-|nuORF ENST00000460416.2_1_2:203914692-203914767:+|nuORF ENST00000460416.2_1_2:203914692-203914767:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.3289794921875 2 707.328921 1412.64329 -0.084549 -5.9804E-05 -0.10923 -7.7259E-05 -0.19378 -0.00013706 707.3287604052202 31.451 0.1931 31.481 31.391 31.584 0.030106 25 8 4 0 0 0 0.69316 1 16478 16478 4.897 0 1 7363900 64151 12118 42687 43649 74922 74922 -0.0465259204963786 THSGFIVKL 9 Unmodified _THSGFIVKL_ 0 0 0 REV__nc|ENSG00000154310|Q9UKE5-6|TNIK REV__nc|ENSG00000154310|Q9UKE5-6|TNIK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2916259765625 2 501.292559 1000.57057 NaN NaN NaN NaN NaN NaN NaN 88.448 1 88.448 87.948 88.948 0 0 0 0 0.85798 1 48957 48957 0.52476 0.12405 1 + 64152 21224 42688 43650 74923 74923 0.07030350685522535 THSRQHKNL 9 Unmodified _THSRQHKNL_ 0 0 0 REV__ENSG00000181666|ENST00000392153|ZNF875 REV__ENSG00000181666|ENST00000392153|ZNF875 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1802062988281 3 374.203856 1119.58974 1.7561 0.00065715 1.7114 0.00064043 3.4676 0.0012976 374.20396638517843 37.225 0.56678 32.941 32.719 33.286 -4.2835 76 34 3 0 0 0 0.21021 1 21711 21711 7.609 2.3121 1 22269000 + 64153 23218 42689 43651 74924 74924 0.034727000291240984 THSTMTQRL 9 Unmodified _THSTMTQRL_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.8503723144531 3 358.850202 1073.52878 -0.52942 -0.00018998 -0.36308 -0.00013029 -0.89251 -0.00032028 358.85021715997755 29.782 0.22673 29.782 29.662 29.888 0 38 13 4 0 0 0 0.4887 1 15448 15448 8.1555 0 1 17788000 64154 8954 42690 43652 74925 74925 -0.0050457306531370705 THSYCTVHF 9 Unmodified _THSYCTVHF_ 0 0 0 ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7393188476562 2 547.739834 1093.46511 -0.5258 -0.000288 -0.084854 -4.6478E-05 -0.61066 -0.00033448 547.7401253159967 35.759 0.22949 35.536 35.412 35.642 -0.2224 22 9 3 0 0 0 0.087258 1 18720 18720 36.044 7.5574 1 4993500 64155 14733 42691 43653 74926 74926 -0.0778793350241358 THSYCTVHF 9 Unmodified _THSYCTVHF_ 0 0 0 ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.738525390625 2 547.739834 1093.46511 -0.5656 -0.0003098 -0.28658 -0.00015697 -0.85218 -0.00046677 547.739502981497 35.997 0.19052 35.775 35.642 35.832 -0.2224 13 8 2 0 0 0 0.087258 1 18857 18857 36.044 14.298 1 4093100 64156 14733 42691 43653 74927 74927 -0.0778793350241358 THSYCTVHF 9 Unmodified _THSYCTVHF_ 0 0 0 ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF ENST00000520701.5_1_5:150867854-150868163:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 547.739834 1093.46511 0.42041 0.00023027 2.9628 0.0016228 3.3832 0.0018531 547.7427262345063 40.447 0.094398 35.917 35.858 35.952 -4.5294 0.071285 0.0034296 NaN 36.044 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3542500 64157 14733 42691 43653 -0.0778793350241358 THTDGSGL 8 Unmodified _THTDGSGL_ 0 0 0 REV__ENSG00000196569|ENST00000421865|LAMA2 REV__ENSG00000196569|ENST00000421865|LAMA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.1852722167969 2 394.182675 786.350796 1.3391 0.00052783 -2.0677 -0.00081507 -0.72869 -0.00028724 394.1822493687913 21.776 0.47839 19.041 18.711 19.19 -2.7348 55 30 3 0 0 0 0.80143 1 11586 11586 5.7604 0 1 6176000 + 64158 23847 42692 43654 74928 74928 -0.05092499992838384 THTGGHGK 8 Unmodified _THTGGHGK_ 0 0 0 ENST00000598352.1_2_19:41248073-41251085:-|nuORF;nc|ENSG00000188493|Q5BKX5-2|ACTMAP;ENST00000597507.1_1_19:41248073-41251085:-|nuORF;nc|ENSG00000188493|Q5BKX5-3|ACTMAP;ENST00000470681.5_2_19:41248340-41251085:-|nuORF ENST00000598352.1_2_19:41248073-41251085:-|nuORF ENST00000598352.1_2_19:41248073-41251085:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.70068359375 2 397.698826 793.3831 NaN NaN NaN NaN NaN NaN NaN 39.541 1 35.09 34.59 35.59 -4.4509 0 0 0 0.97444 1 23483 23483 2.3027 0 1 64159 13856 42693 43655 74929 74929 -0.021856677991763718 THTIGDSSDMV 11 Unmodified _THTIGDSSDMV_ 0 0 0 REV__ENST00000417985.1_1_X:46147855-46148119:-|nuORF REV__ENST00000417985.1_1_X:46147855-46148119:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7540283203125 2 581.755878 1161.4972 NaN NaN NaN NaN NaN NaN NaN 36.212 1 36.212 35.712 36.712 0 0 0 0 0.76159 1 19193 19193 13.906 1.3745 1 + 64160 26795 42694 43656 74930 74930 -0.07708610609915922 THTQAASLPY 10 Unmodified _THTQAASLPY_ 0 0 0 nc|ENSG00000130347|Q8WWV3-3|RTN4IP1;nc|ENSG00000130347|Q8WWV3-2|RTN4IP1;ENSG00000130347|ENST00000369063|RTN4IP1 nc|ENSG00000130347|Q8WWV3-3|RTN4IP1 nc|ENSG00000130347|Q8WWV3-3|RTN4IP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7933349609375 2 544.772188 1087.52982 0.93506 0.00050939 -0.61829 -0.00033683 0.31677 0.00017257 544.7718402920362 70.602 0.63972 64.426 64.281 64.921 -6.1757 45 33 2 0 0 0 0.22891 1 46166 46166 15.248 0 1 21568000 64161 4206 42695 43657 74931 74931 -0.0104403542475211 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.84765625 3 352.846681 1055.51821 -0.39321 -0.00013874 -0.0047864 -1.6889E-06 -0.398 -0.00014043 352.8467187632665 29.531 0.25067 29.531 29.411 29.662 0 37 16 3 0 0 0 0.2143 1 15274 15274 15.248 0.41021 1 10958000 + 64162 23845 42696 43658 74932 74932 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.846923828125 3 352.846681 1055.51821 0.59966 0.00021159 -0.023505 -8.2935E-06 0.57615 0.00020329 352.8465869677021 29.447 0.2902 29.367 29.235 29.525 -0.080429 30 17 2 0 0 0 0.39863 1 15330 15330 12.241 4.0851 1 23696000 + 64163 23845 42696 43658 74933 74933 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8469543457031 3 352.846681 1055.51821 0.61658 0.00021756 -0.51122 -0.00018038 0.10537 3.7178E-05 352.8464195730425 29.727 0.36692 29.647 29.501 29.868 -0.080429 30 16 2 0 0 0 0.2143 1 15443 15443 15.248 1.3424 1 26072000 + 64164 23845 42696 43658 74934 74934 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.846923828125 3 352.846681 1055.51821 0.61658 0.00021756 -0.51122 -0.00018038 0.10537 3.7178E-05 352.8464195730425 29.727 0.36692 29.647 29.501 29.868 -0.080429 30 16 2 0 0 0 0.19994 1 15330 15330 12.241 2.1667 1 26072000 + 64165 23845 42696 43658 74935 74935 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1916809082031 3 352.846681 1055.51821 -0.099415 -3.5078E-05 0.89144 0.00031454 0.79203 0.00027946 352.84695291088576 29.577 0.18586 29.607 29.507 29.693 0.030106 13 8 2 0 0 0 0.39863 1 15413 15413 12.241 4.6317 1 5176800 + 64166 23845 42696 43658 74936 74936 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1916809082031 3 352.846681 1055.51821 -0.099415 -3.5078E-05 0.89144 0.00031454 0.79203 0.00027946 352.84695291088576 29.577 0.18586 29.607 29.507 29.693 0.030106 13 8 2 0 0 0 0.18811 1 15413 15413 12.241 2.1667 1 5176800 + 64167 23845 42696 43658 74937 74937 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.847412109375 3 352.846681 1055.51821 1.7256 0.00060886 -0.099875 -3.5241E-05 1.6257 0.00057362 352.8464516594101 33.402 0.61573 29.417 29.242 29.858 -3.9853 87 34 3 0 0 0 0.32871 1 19231 19231 10.8 0 1 46841000 + 64168 23845 42696 43658 74938 74938 -0.007325557197418675 THVAEQRCL 9 Unmodified _THVAEQRCL_ 0 0 0 REV__nc|ENSG00000196557|O95180-2|CACNA1H REV__nc|ENSG00000196557|O95180-2|CACNA1H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 352.846681 1055.51821 -0.39321 -0.00013874 -0.0047864 -1.6889E-06 -0.398 -0.00014043 352.8467187632665 29.531 0.25067 29.531 29.411 29.662 0 -0.019164 9.0911E-05 NaN 15.248 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 10958000 + 64169 23845 42696 43658 -0.007325557197418675 THVGKVNIF 9 Unmodified _THVGKVNIF_ 0 0 0 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7903137207031 2 507.790184 1013.56581 -0.35038 -0.00017792 0.16367 8.3108E-05 -0.18672 -9.4814E-05 507.7905685462403 39.47 0.27885 39.173 39.029 39.308 -0.29716 33 12 4 0 0 0 0.012668 1 20805 20805 72.968 34.994 1 4191500 64170 5229 42697 43659 74939 74939 0.059574665427589935 THVGKVNIF 9 Unmodified _THVGKVNIF_ 0 0 0 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 ENSG00000140395|ENST00000267973|SKIC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7861022949219 2 507.790184 1013.56581 0.42269 0.00021464 -0.020034 -1.0173E-05 0.40266 0.00020447 507.7900326461296 39.115 0.3197 39.127 38.962 39.281 0.011452 26 14 2 0 0 0 0.015445 2 20782 20782;20892 68.081 22.06 1 4235300 64171 5229 42697 43659 74940;74941 74940 0.059574665427589935 THVHFEFVC 9 Unmodified _THVHFEFVC_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5076293945312 3 373.507777 1117.5015 -0.56175 -0.00020982 0.42549 0.00015892 -0.13626 -5.0894E-05 373.5079867100412 15.57 1.0378 15.556 15.331 16.369 -0.014067 876 373 4 0 0 0 0.49272 1 7675 7675 4.897 0 1 14804000 + 64172 29496 42698 43660 74942 74942 -0.05255056605687969 THVHFEFVC 9 Unmodified _THVHFEFVC_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8889770507812 3 373.507777 1117.5015 -0.26025 -9.7205E-05 1.4178 0.00052956 1.1576 0.00043235 373.5083701013659 37.114 0.27554 36.864 36.667 36.942 -0.2497 18 11 2 0 0 0 0.20727 1 19407 19407 2.4985 0 1 1441500 + 64173 29496 42698 43660 74943 74943 -0.05255056605687969 THVHLCDHV 9 Unmodified _THVHLCDHV_ 0 0 0 ENST00000356607.8_1_1:10690052-10690751:+|nuORF ENST00000356607.8_1_1:10690052-10690751:+|nuORF ENST00000356607.8_1_1:10690052-10690751:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 353.8382568359375 3 354.171276 1059.492 NaN NaN NaN NaN NaN NaN NaN 47.011 1 41.931 41.431 42.431 -5.0805 0 0 0 0.7453 1 29130 29130 4.897 0 1 64174 12093 42699 43661 74944 74944 -0.035368248912163835 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1795959472656 3 374.513874 1120.51979 -0.0775 -2.9025E-05 -1.1374 -0.00042599 -1.2149 -0.00045501 374.51366771852304 41.659 1.1055 41.352 40.674 41.779 -0.30682 76 52 2 0 0 0 0.18118 1 21828 21828 12.241 6.0488 1 7670300 + 64175 24985 42700 43662 74945 74945 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1796569824219 3 374.513874 1120.51979 -0.44607 -0.00016706 -0.58907 -0.00022061 -1.0351 -0.00038767 374.5139556490055 35.847 0.67122 35.624 35.201 35.873 -0.2224 61 30 3 0 0 0 0.20727 1 18780 18780 4.897 1.31 1 7224200 + 64176 24985 42700 43662 74946 74946 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1799621582031 3 374.513874 1120.51979 -0.0032355 -1.2117E-06 0.57663 0.00021596 0.5734 0.00021475 374.5141324171842 38.614 1.8185 38.328 37.583 39.402 -0.28687 122 85 2 0 0 0 0.19613 1 20855 20855 8.1555 1.9637 1 9214800 + 64177 24985 42700 43662 74947 74947 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1793212890625 3 374.513874 1120.51979 -0.090253 -3.3801E-05 -0.30891 -0.00011569 -0.39916 -0.00014949 374.5140025666955 35.454 0.47735 35.479 35.267 35.744 0.024967 40 22 3 0 0 0 0.19891 1 18676 18676 7.609 3.4194 1 4165900 + 64178 24985 42700 43662 74948 74948 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1795654296875 3 374.513874 1120.51979 -0.21677 -8.1182E-05 0.0076358 2.8597E-06 -0.20913 -7.8322E-05 374.5140494325565 31.652 1.5691 31.682 31.152 32.721 0.030106 111 68 3 0 0 0 0.18118 1 17067 17067 8.1555 0 1 8487100 + 64179 24985 42700 43662 74949 74949 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.18017578125 3 374.513874 1120.51979 -0.27512 -0.00010304 0.25019 9.3701E-05 -0.024926 -9.3352E-06 374.5140896288198 36.586 0.67568 36.608 36.414 37.089 0.021545 52 31 2 0 0 0 0.19613 1 19490 19490 8.1555 1.9637 1 4833100 + 64180 24985 42700 43662 74950 74950 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1803588867188 3 374.513874 1120.51979 1.3249 0.00049619 -0.34288 -0.00012841 0.98202 0.00036778 374.51402246938954 38.938 0.82226 34.487 34.251 35.073 -4.4509 79 51 2 0 0 0 0.18521 1 23434 23434 11.495 7.9077 1 27602000 + 64181 24985 42700 43662 74951 74951 -0.03564637955355465 THVIFCWCL 9 Unmodified _THVIFCWCL_ 0 0 0 REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF REV__ENST00000261427.9_1_4:39781102-39781159:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1803894042969 3 374.513874 1120.51979 1.0046 0.00037623 0.19495 7.3012E-05 1.1995 0.00044924 374.5140780409422 39.623 0.42094 35.172 35.073 35.494 -4.4509 41 26 2 0 0 0 0.19298 1 23701 23701 1.0715 0.93157 1 30585000 + 64182 24985 42700 43662 74952 74952 -0.03564637955355465 THVILVKK 8 Unmodified _THVILVKK_ 0 0 0 REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1 REV__nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MSMS AL20221201_MKP_PDAC_01 4 469.3165283203125 2 469.313295 936.612037 NaN NaN NaN NaN NaN NaN NaN 106.24 1 100.06 99.561 100.56 -6.1757 0 0 0 0.97444 1 71122 71122 0.69038 0 1 + 64183 20943 42701 43663 74953 74953 0.14119531444850963 THVLRFGGIF 10 Unmodified _THVLRFGGIF_ 0 0 0 nc|ENSG00000164418|Q13002-4|GRIK2;nc|ENSG00000164418|Q13002-2|GRIK2;nc|ENSG00000164418|Q13002-5|GRIK2;ENSG00000164418|ENST00000369134|GRIK2;nc|ENSG00000164418|Q13002-3|GRIK2;nc|ENSG00000164418|Q13002-6|GRIK2;nc|ENSG00000164418|Q13002-7|GRIK2 nc|ENSG00000164418|Q13002-4|GRIK2 nc|ENSG00000164418|Q13002-4|GRIK2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.1838073730469 3 382.885464 1145.63456 1.5395 0.00058945 -0.97651 -0.00037389 0.56298 0.00021556 382.8850181536829 36.997 0.28584 32.714 32.571 32.857 -4.2835 31 17 2 0 0 0 0.23227 1 21593 21593 3.5871 0 1 8627000 64184 7193 42702 43664 74954 74954 0.0675713084247036 THVPSFPS 8 Unmodified _THVPSFPS_ 0 0 0 ENST00000467586.5_1_17:74084367-74085867:-|nuORF ENST00000467586.5_1_17:74084367-74085867:-|nuORF ENST00000467586.5_1_17:74084367-74085867:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 435.7186889648438 2 436.21906 870.423567 1.1159 0.00048678 0.63369 0.00027643 1.7496 0.00076321 436.21955325096116 47.982 1.1456 42.748 42.371 43.516 -5.2339 106 69 2 0 0 0 8.7369 1 30022 30022 12.532 12.532 1 33730000 64185 13783 42703 43665 74955 74955 -0.016827461994239457 THVQPDDIGAH 11 Unmodified _THVQPDDIGAH_ 0 0 0 ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7838134765625 2 595.283451 1188.55235 -0.41029 -0.00024424 1.0033 0.00059722 0.59296 0.00035298 595.283583709954 40.833 0.38007 40.833 40.72 41.1 0 46 37 2 0 0 0 0.2603 1 21962 21962 28.495 13.656 1 13182000 64186 5146 42704 43666 74956 74956 -0.034384360271587866 THVRQHNIF 9 Unmodified _THVRQHNIF_ 0 0 0 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 REV__nc|ENSG00000173480|Q8TAU3-2|ZNF417 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.1718139648438 3 384.540468 1150.59957 0.1264 4.8606E-05 1.5326 0.00058934 1.659 0.00063795 384.54112383709526 28.272 0.070381 28.301 28.262 28.332 0.029566 4 2 2 0 0 0 0.19994 1 14714 14714 12.241 6.0488 1 864860 + 64187 22733 42705 43667 74957 74957 0.030298880345071666 THVSNKYGTD 10 Unmodified _THVSNKYGTD_ 0 0 0 nc|ENSG00000170954|Q09FC8-4|ZNF415;nc|ENSG00000170954|Q09FC8-6|ZNF415;ENSG00000170954|ENST00000243643|ZNF415;nc|ENSG00000170954|Q09FC8-2|ZNF415;nc|ENSG00000170954|Q09FC8|ZNF415 nc|ENSG00000170954|Q09FC8-4|ZNF415 nc|ENSG00000170954|Q09FC8-4|ZNF415 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.7665405273438 2 561.264727 1120.5149 1.4162 0.00079486 1.1423 0.00064111 2.5585 0.001436 561.2665463036473 35.894 0.54385 31.702 31.474 32.018 -4.1928 61 33 2 0 0 0 0.22636 1 21002 21002 8.1555 0 1 6429800 64188 8051 42706 43668 74958 74958 -0.0405352729274 THVSTHGERAA 11 Unmodified _THVSTHGERAA_ 0 0 0 REV__ENSG00000197912|ENST00000645818|SPG7 REV__ENSG00000197912|ENST00000645818|SPG7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 389.1753540039062 3 389.195138 1164.56358 0.8577 0.00033381 0.81184 0.00031596 1.6695 0.00064978 389.19557318400666 40.411 0.37134 35.881 35.774 36.145 -4.5294 32 22 2 0 0 0 0.29817 1 24128 24128 4.1166 2.3744 1 9527600 + 64189 23968 42707 43669 74959 74959 -0.012116139329691578 THVYNYCTSV 10 Unmodified _THVYNYCTSV_ 0 0 0 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 ENSG00000055130|ENST00000325222|CUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.17724609375 3 396.178096 1185.51246 0.04118 1.6314E-05 -0.59111 -0.00023419 -0.54993 -0.00021787 396.17790622539417 23.607 0.39904 23.619 23.35 23.75 0.012396 34 18 3 0 0 0 0.69377 1 12019 12019 1.7423 0.28716 1 5039600 64190 773 42708 43670 74960 74960 -0.07287699022072047 THWEFEYF 8 Unmodified _THWEFEYF_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.4002685546875 2 579.748182 1157.48181 -0.06837 -3.9637E-05 1.3748 0.00079702 1.3064 0.00075739 579.74888712165 69.836 0.33806 69.357 69.134 69.472 -0.47903 26 14 3 0 0 0 0.80676 1 38121 38121 2.5775 0.27475 1 1130900 + 64191 23892 42709 43671 74961 74961 -0.09063109344810982 THWEFEYF 8 Unmodified _THWEFEYF_ 0 0 0 REV__ENSG00000197081|ENST00000356956|IGF2R REV__ENSG00000197081|ENST00000356956|IGF2R MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 579.748182 1157.48181 -0.06837 -3.9637E-05 1.3748 0.00079702 1.3064 0.00075739 579.74888712165 69.836 0.33806 69.357 69.134 69.472 -0.47903 0 0 NaN 2.5775 26 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1130900 + 64192 23892 42709 43671 -0.09063109344810982 THYHSSRHF 9 Unmodified _THYHSSRHF_ 0 0 0 REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.182861328125 3 391.184573 1170.53189 -1.1347 -0.00044388 -2.6202 -0.001025 -3.7549 -0.0014689 391.18368191161846 32.677 0.19121 32.677 32.561 32.753 0 11 9 2 0 0 0 0.48152 1 17101 17101 5.2969 0 1 1901800 + 64193 20920 42710 43672 74962 74962 -0.04655561896288418 THYHSSRHF 9 Unmodified _THYHSSRHF_ 0 0 0 REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.184573 1170.53189 -1.1347 -0.00044388 -2.6202 -0.001025 -3.7549 -0.0014689 391.18368191161846 32.677 0.19121 32.677 32.561 32.753 0 0.029995 0.00019801 NaN 5.2969 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1901800 + 64194 20920 42710 43672 -0.04655561896288418 THYHSSRHF 9 Unmodified _THYHSSRHF_ 0 0 0 REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF REV__ENST00000481507.5_1_9:37326993-37357262:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.184573 1170.53189 -0.22781 -8.9117E-05 -2.8487 -0.0011144 -3.0765 -0.0012035 391.1835917634227 32.776 0.21268 32.617 32.522 32.735 -0.15918 -0.029995 -7.0143E-05 NaN 5.2969 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2148300 + 64195 20920 42710 43672 -0.04655561896288418 TIADLELHY 9 Unmodified _TIADLELHY_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.777587890625 2 537.776939 1073.53933 NaN NaN NaN NaN NaN NaN NaN 58.792 1 58.792 58.292 59.292 0 0 0 0 0.056448 1 32741 32741 54.774 32.115 1 64196 1675 42711 43673 74963 74963 0.005497328607589225 TIAEGLTLAQV 11 Unmodified _TIAEGLTLAQV_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.3204956054688 2 558.318971 1114.62339 0.15666 8.7464E-05 0.2773 0.00015482 0.43396 0.00024229 558.3191522006931 70.626 0.21245 70.626 70.474 70.686 0 16 8 2 0 0 0 0.69838 1 39317 39317 8.7454 2.5396 1 759020 64197 5260 42712 43674 74964 74964 0.0706626395767671 TIAEGLTLAQV 11 Unmodified _TIAEGLTLAQV_ 0 0 0 nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 nc|ENSG00000140632|Q49A26-5|GLYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.31787109375 2 558.318971 1114.62339 0.6656 0.00037162 0.098213 5.4834E-05 0.76382 0.00042645 558.3188850420925 71.172 0.26263 70.695 70.505 70.767 -0.47735 20 11 2 0 0 0 0.39452 1 38930 38930 34.402 17.289 1 1231700 64198 5260 42712 43674 74965 74965 0.0706626395767671 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.8047485351562 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 69.207 1 69.207 68.707 69.707 0 0 0 0 0.7453 1 38562 38562 7.9102 0 1 64199 1707 42713 43675 74966 74966 0.07455200137110296 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.8059692382812 2 524.8055 1047.59645 0.50273 0.00026383 0.5521 0.00028974 1.0548 0.00055358 524.8057086162082 69.056 0.42795 69.087 68.886 69.314 0.030914 55 20 3 0 0 0 0.0086904 2 37990 37889;37990 107.19 53.354 1 38475000 64200 1707 42713 43675 74967;74968 74968 0.07455200137110296 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8060302734375 2 524.8055 1047.59645 0.22791 0.00011961 0.10011 5.254E-05 0.32802 0.00017215 524.8055940949637 85.288 1.622 79.113 78.172 79.794 -6.1757 193 96 3 0 0 0 0.020973 5 56556 56001;56129;56263;56398;56556 62.573 16.552 1 78829000 64201 1707 42713 43675 74969;74970;74971;74972;74973 74973 0.07455200137110296 TIAEIKNLF 9 Unmodified _TIAEIKNLF_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF;ENST00000601652.5_1_19:14640444-14674077:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MSMS AL20221201_MKP_PDAC_01 4 524.8085327148438 2 524.8055 1047.59645 NaN NaN NaN NaN NaN NaN NaN 84.406 1 78.23 77.73 78.73 -6.1757 0 0 0 0.022863 1 55526 55526 74.929 24.996 1 64202 1707 42713 43675 74974 74974 0.07455200137110296 TIAKRHGF 8 Unmodified _TIAKRHGF_ 0 0 0 REV__nc|ENSG00000149091|Q13574-6|DGKZ REV__nc|ENSG00000149091|Q13574-6|DGKZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2697448730469 2 465.269419 928.524284 0.24303 0.00011308 -0.017739 -8.2534E-06 0.22529 0.00010482 465.2696422478376 38.915 0.48069 38.926 38.801 39.281 0.011452 32 22 2 0 0 0 0.72953 1 20696 20696 14.582 0.67564 1 4365500 + 64203 20978 42714 43676 74975 74975 0.05716330574091444 TIAQLVHAV 9 Unmodified _TIAQLVHAV_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2850646972656 2 476.284734 950.554916 0.54569 0.0002599 -0.3005 -0.00014313 0.24519 0.00011678 476.28461291037195 57.114 0.46891 56.628 56.479 56.948 -0.48554 34 21 2 0 0 0 0.12841 1 31016 31016 30.225 13.283 1 3235400 64204 6700 42715 43677 74976 74976 0.07766064168470166 TIAQLVHAV 9 Unmodified _TIAQLVHAV_ 0 0 0 nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B nc|ENSG00000160208|Q14684-2|RRP1B MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 476.284734 950.554916 1.7096 0.00081424 -0.66321 -0.00031588 1.0463 0.00049836 476.2844826267474 62.493 0.27044 56.317 56.191 56.461 -6.1757 -0.15559 -0.00025474 NaN 30.225 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 8615500 64205 6700 42715 43677 0.07766064168470166 TIASAIPAY 9 Unmodified _TIASAIPAY_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4932861328125 1 906.49311 905.485833 0.67361 0.00061062 -0.34398 -0.00031181 0.32963 0.00029881 906.4930230298544 54.677 0.2845 54.677 54.505 54.79 0 20 11 2 0 0 0 0.023164 2 30310 30310;30421 60.39 20.432 1 3490200 64206 1546 42716 43678 74977;74978 74977 0.029309801488807352 TIASAIPAY 9 Unmodified _TIASAIPAY_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.49267578125 1 906.49311 905.485833 -0.114 -0.00010334 -0.078313 -7.099E-05 -0.19231 -0.00017433 906.4931975034643 55.27 0.31623 54.792 54.629 54.945 -0.47798 24 14 2 0 0 0 0.013472 2 29949 29949;30046 70.716 32.742 1 2504300 64207 1546 42716 43678 74979;74980 74979 0.029309801488807352 TIASAIPAY 9 Unmodified _TIASAIPAY_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.496826171875 1 906.49311 905.485833 1.9937 0.0018073 -0.30802 -0.00027922 1.6856 0.001528 906.4930620671058 62.723 0.38033 56.547 56.378 56.759 -6.1757 33 18 2 0 0 0 0.013472 2 40429 40429;40574 70.716 26.857 1 20382000 64208 1546 42716 43678 74981;74982 74981 0.029309801488807352 TIASAIPAY 9 Unmodified _TIASAIPAY_ 0 0 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 453.750732421875 2 453.750193 905.485833 2.4816 0.001126 -2.8408 -0.001289 -0.35926 -0.00016301 453.7486969022984 62.721 0.20111 56.546 56.422 56.623 -6.1757 14 9 2 0 0 0 0.030883 1 40517 40517 50.855 26.834 1 6229500 64209 1546 42716 43678 74983 74983 0.029309801488807352 TIASETLRI 9 Unmodified _TIASETLRI_ 0 0 0 REV__ENSG00000182415|ENST00000250838|CDY2A REV__ENSG00000182415|ENST00000250838|CDY2A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 502.8114013671875 2 502.292756 1002.57096 1.2969 0.00065141 3.0184 0.0015161 4.3153 0.0021675 502.2950051398804 95.407 0.60316 89.231 88.748 89.351 -6.1757 43 33 2 0 0 0 0.1474 1 62895 62895 21.747 2.3076 1 15450000 + 64210 19687 42717 43679 74984 74984 0.06977725614717656 TICAEPNP 8 Unmodified _TICAEPNP_ 0 0 0 REV__ENSG00000169247|ENST00000515425|SH3TC2 REV__ENSG00000169247|ENST00000515425|SH3TC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2280883789062 2 422.697103 843.379654 0.70617 0.0002985 1.4963 0.00063247 2.2024 0.00093096 422.69773867251104 54.324 0.39574 54.324 54.132 54.528 0 41 17 3 0 0 0 8.7369 1 30100 30100 2.5775 0 1 9638800 + 64211 22388 42718 43680 74985 74985 -0.04830098688069029 TICYTFILL 9 Unmodified _TICYTFILL_ 0 0 0 ENSG00000197405|ENST00000355085|C5AR1 ENSG00000197405|ENST00000355085|C5AR1 ENSG00000197405|ENST00000355085|C5AR1 MSMS AL20221201_MKP_PDAC_01 4 543.7981567382812 2 543.798829 1085.5831 NaN NaN NaN NaN NaN NaN NaN 101.03 1 94.856 94.356 95.356 -6.1757 0 0 0 0.080768 1 67707 67707 48.346 10.195 1 64212 9948 42719 43681 74986 74986 0.04373626033543587 TIDCGHNFCL 10 Unmodified _TIDCGHNFCL_ 0 0 0 ENSG00000204616|ENST00000376734|TRIM31;nc|ENSG00000204616|Q9BZY9-2|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 ENSG00000204616|ENST00000376734|TRIM31 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.4929809570312 3 374.82841 1121.4634 0.25432 9.5325E-05 0.51542 0.00019319 0.76973 0.00028852 374.8281277926866 72.77 0.10551 72.77 72.734 72.84 0 6 5 2 0 0 0 0.23981 1 40531 40531 0.77653 0 1 372450 64213 10310 42720 43682 74987 74987 -0.09247310582668433 TIDDGIFEV 9 Unmodified _TIDDGIFEV_ 0 0 0 ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1008.485534667969 1 1008.48842 1007.48114 0.11219 0.00011314 -0.26351 -0.00026575 -0.15133 -0.00015261 1008.4879136695298 74.275 0.24424 74.275 74.166 74.41 0 19 10 2 0 0 0 0.2143 1 41395 41395 21.747 10.106 1 793080 64214 10277 42721 43683 74988 74988 -0.02229948784508906 TIDDIVLTI 9 Unmodified _TIDDIVLTI_ 0 0 0 nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7894287109375 2 501.789515 1001.56448 0.41796 0.00020973 0.32181 0.00016148 0.73977 0.00037121 501.7898099931078 82.807 0.27834 82.807 82.635 82.914 0 28 12 3 0 0 0 0.39863 1 45904 45904 12.532 0 1 1456000 64215 9696 42722 43684 74989 74989 0.06375787663341725 TIDDIVLTI 9 Unmodified _TIDDIVLTI_ 0 0 0 nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 MSMS AL20221201_MKP_PDAC_01 4 501.7899475097656 2 501.789515 1001.56448 NaN NaN NaN NaN NaN NaN NaN 92.203 1 86.027 85.527 86.527 -6.1757 0 0 0 0.23581 1 60966 60966 28.487 0 1 64216 9696 42722 43684 74990 74990 0.06375787663341725 TIDDIVLTI 9 Unmodified _TIDDIVLTI_ 0 0 0 nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 MSMS AL20221201_MKP_PDAC_01 4 501.7894897460938 2 501.789515 1001.56448 NaN NaN NaN NaN NaN NaN NaN 92.4 1 86.224 85.724 86.724 -6.1757 0 0 0 0.050352 1 61104 61104 57.471 6.6163 1 64217 9696 42722 43684 74991 74991 0.06375787663341725 TIDDIVLTI 9 Unmodified _TIDDIVLTI_ 0 0 0 nc|ENSG00000188782|Q7RTX7-2|CATSPER4;ENSG00000188782|ENST00000456354|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 nc|ENSG00000188782|Q7RTX7-2|CATSPER4 MSMS AL20221201_MKP_PDAC_01 4 501.7901000976562 2 501.789515 1001.56448 NaN NaN NaN NaN NaN NaN NaN 92.63 1 86.454 85.954 86.954 -6.1757 0 0 0 0.26667 1 61263 61263 26.884 0 1 64218 9696 42722 43684 74992 74992 0.06375787663341725 TIDFLEFKY 9 Unmodified _TIDFLEFKY_ 0 0 0 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 ENSG00000068097|ENST00000184956|HEATR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3060913085938 2 588.30279 1174.59103 0.11742 6.9081E-05 -1.3614 -0.00080092 -1.244 -0.00073184 588.3020338684953 33.203 0.35987 33.231 32.978 33.338 0.028931 41 15 4 0 0 0 0.54444 1 17386 17386 4.756 0.81161 1 20521000 64219 973 42723 43685 74993 74993 0.010714765546708804 TIDFVEMKV 9 Unmodified _TIDFVEMKV_ 0 0 0 ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB ENSG00000084674|ENST00000233242|APOB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.762939453125 2 541.283543 1080.55253 0.42577 0.00023046 0.040408 2.1872E-05 0.46617 0.00025233 541.7842024438805 82.075 0.55804 75.899 75.657 76.215 -6.1757 43 30 2 0 0 0 0.18521 1 53794 53794 7.2892 0.56607 1 8427000 64220 1392 42724 43686 74994 74994 0.015478476484986459 TIDLAKHPCN 10 Unmodified _TIDLAKHPCN_ 0 0 0 ENST00000514826.5_1_4:142143525-142143672:+|nuORF;ENSG00000109445|ENST00000262990|ZNF330 ENST00000514826.5_1_4:142143525-142143672:+|nuORF ENST00000514826.5_1_4:142143525-142143672:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.81494140625 2 556.281866 1110.54918 0.43275 0.00024073 2.2259 0.0012382 2.6587 0.001479 556.2829780714383 73.307 0.22166 73.348 73.27 73.491 0.041924 16 9 2 0 0 0 0.22149 1 40461 40461 20.454 0 1 648800 64221 2648 42725 43687 74995 74995 -0.0016740240550916496 TIDRMNKI 8 Unmodified _TIDRMNKI_ 0 0 0 REV__nc|ENSG00000019991|P14210-4|HGF REV__nc|ENSG00000019991|P14210-4|HGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7731628417969 2 495.773677 989.5328 NaN NaN NaN NaN NaN NaN NaN 79.377 1 79.377 78.877 79.877 0 0 0 0 0.97348 1 44093 44093 5.7604 0 1 + 64222 29485 42726 43688 74996 74996 0.03761516428392042 TIDSFTQNQ 9 Unmodified _TIDSFTQNQ_ 0 0 0 nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220;nc|ENSG00000134313|Q9ULH0-3|KIDINS220 nc|ENSG00000134313|Q9ULH0-2|KIDINS220 nc|ENSG00000134313|Q9ULH0-2|KIDINS220 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2479858398438 2 527.246003 1052.47745 0.79714 0.00042029 2.2646 0.001194 3.0618 0.0016143 527.2477540309366 82.918 0.32074 76.742 76.589 76.91 -6.1757 21 17 2 0 0 0 0.20428 1 54487 54487 22.736 5.794 1 9675000 64223 4589 42727 43689 74997 74997 -0.04668618558389426 TIDVMDVER 9 Unmodified _TIDVMDVER_ 0 0 0 REV__ENSG00000148335|ENST00000372483|NTMT1 REV__ENSG00000148335|ENST00000372483|NTMT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7921142578125 2 539.265881 1076.51721 0.48455 0.0002613 1.0102 0.00054479 1.4948 0.00080609 539.2668827906448 72.588 0.33318 72.112 71.918 72.251 -0.47609 29 15 3 0 0 0 0.16785 1 39718 39718 16.942 1.0951 1 1475000 + 64224 20939 42728 43690 74998 74998 -0.017988148793165237 TIEENIGWM 9 Unmodified _TIEENIGWM_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7564697265625 2 546.755149 1091.49575 0.75573 0.0004132 0.46081 0.00025195 1.2165 0.00066515 546.756208380291 66.809 0.33394 66.827 66.673 67.007 0.018028 30 15 3 0 0 0 0.49272 1 36662 36662 7.9102 0 1 8063900 64225 7176 42729 43691 74999 74999 -0.04634199908014125 TIEKVSCE 8 Unmodified _TIEKVSCE_ 0 0 0 nc|ENSG00000162594|Q5VWK5-3|IL23R;ENSG00000162594|ENST00000347310|IL23R nc|ENSG00000162594|Q5VWK5-3|IL23R nc|ENSG00000162594|Q5VWK5-3|IL23R MSMS AL20221201_MKP_PDAC_01 4 454.9240112304688 2 454.723318 907.432083 NaN NaN NaN NaN NaN NaN NaN 45.954 1 41 40.5 41.5 -4.9549 0 0 0 0.88449 1 28304 28304 19.257 3.4098 1 64226 6877 42730 43692 75000 75000 -0.025335603451139832 TIEVLPPP 8 Unmodified _TIEVLPPP_ 0 0 0 REV__ENSG00000163380|ENST00000420581|LMOD3 REV__ENSG00000163380|ENST00000420581|LMOD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 865.5032348632812 1 865.502946 864.49567 1.2273 0.0010622 -0.43417 -0.00037577 0.79309 0.00068642 865.5021328020596 64.077 0.36777 57.901 57.765 58.132 -6.1757 25 18 2 0 0 0 0.28922 2 41449 41449;41577 56.541 16.093 1 9804600 + 64227 21756 42731 43693 75001;75002 75001 0.058001681542691585 TIEVLPPP 8 Unmodified _TIEVLPPP_ 0 0 0 REV__ENSG00000163380|ENST00000420581|LMOD3 REV__ENSG00000163380|ENST00000420581|LMOD3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 865.502946 864.49567 -0.31742 -0.00027473 0.99146 0.00085811 0.67404 0.00058339 865.503873248836 58.383 0.25028 57.892 57.778 58.028 -0.49079 -0.004724 0.00047517 NaN 56.541 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1898600 + 64228 21756 42731 43693 0.058001681542691585 TIEVLPPP 8 Unmodified _TIEVLPPP_ 0 0 0 REV__ENSG00000163380|ENST00000420581|LMOD3 REV__ENSG00000163380|ENST00000420581|LMOD3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 1 865.502946 864.49567 1.2273 0.0010622 -0.43417 -0.00037577 0.79309 0.00068642 865.5021328020596 64.077 0.36777 57.901 57.765 58.132 -6.1757 0.004724 -0.00075872 NaN 56.541 25 18 2 NaN NaN NaN NaN 0 NaN NaN 0 9804600 + 64229 21756 42731 43693 0.058001681542691585 TIFAGTLITA 10 Unmodified _TIFAGTLITA_ 0 0 0 ENST00000457540.1_1_1:565028-565094:+|nuORF;ENSG00000198763|ENST00000361453|MT-ND2 ENST00000457540.1_1_1:565028-565094:+|nuORF ENST00000457540.1_1_1:565028-565094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2934265136719 2 504.292225 1006.5699 -0.49702 -0.00025064 1.7959 0.00090568 1.2989 0.00065503 504.2933120480362 78.688 0.31125 78.202 78.012 78.323 -0.48596 18 11 2 0 0 0 0.62068 1 43094 43094 10.074 2.1638 1 579790 64230 10146 42732 43694 75003 75003 0.0668751124579785 TIFAGTLITA 10 Unmodified _TIFAGTLITA_ 0 0 0 ENST00000457540.1_1_1:565028-565094:+|nuORF;ENSG00000198763|ENST00000361453|MT-ND2 ENST00000457540.1_1_1:565028-565094:+|nuORF ENST00000457540.1_1_1:565028-565094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2934265136719 2 504.292225 1006.5699 0.35683 0.00017995 0.5312 0.00026788 0.88802 0.00044782 504.29269307734995 78.117 0.28965 78.169 78.037 78.327 0.052452 19 11 2 0 0 0 0.04925 1 43168 43168 58.679 33.28 1 2389300 64231 10146 42732 43694 75004 75004 0.0668751124579785 TIFAGTLITA 10 Unmodified _TIFAGTLITA_ 0 0 0 ENST00000457540.1_1_1:565028-565094:+|nuORF;ENSG00000198763|ENST00000361453|MT-ND2 ENST00000457540.1_1_1:565028-565094:+|nuORF ENST00000457540.1_1_1:565028-565094:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2931518554688 2 504.292225 1006.5699 1.2511 0.00063094 1.471 0.00074182 2.7221 0.0013728 504.29312790733945 86.568 0.33218 80.393 80.177 80.509 -6.1757 31 17 2 0 0 0 0.074936 1 57024 57024 52.268 18.166 1 20301000 64232 10146 42732 43694 75005 75005 0.0668751124579785 TIFDRKESPA 10 Unmodified _TIFDRKESPA_ 0 0 0 REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.30615234375 2 582.306395 1162.59824 0.39011 0.00022716 -0.84909 -0.00049443 -0.45898 -0.00026727 582.3056828888679 39.137 0.27332 39.137 38.97 39.244 0 28 12 3 0 0 0 0.60623 1 20917 20917 10.824 0.75 1 9033400 + 64233 22592 42733 43695 75006 75006 0.023442091551032718 TIFDRKESPA 10 Unmodified _TIFDRKESPA_ 0 0 0 REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF REV__ENST00000532043.1_1_11:22294373-22299379:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3062744140625 2 582.306395 1162.59824 0.54579 0.00031782 -1.2897 -0.00075098 -0.74387 -0.00043316 582.3058544334388 43.912 0.43075 39.148 38.95 39.381 -4.7648 65 27 3 0 0 0 0.66569 1 26771 26771 6.7232 1.4263 1 50524000 + 64234 22592 42733 43695 75007 75007 0.023442091551032718 TIFHPLLYAF 10 Unmodified _TIFHPLLYAF_ 0 0 0 ENSG00000172209|ENST00000304402|GPR22 ENSG00000172209|ENST00000304402|GPR22 ENSG00000172209|ENST00000304402|GPR22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3380126953125 2 611.336967 1220.65938 0.82907 0.00050684 0.76468 0.00046748 1.5938 0.00097432 611.3372456404942 68.924 0.63914 68.949 68.582 69.221 0.025146 58 30 3 0 0 0 0.42068 1 37822 37822 20.454 6.5476 1 3407100 64235 8192 42734 43696 75008 75008 0.05787765925174426 TIFHPLLYAF 10 Unmodified _TIFHPLLYAF_ 0 0 0 ENSG00000172209|ENST00000304402|GPR22 ENSG00000172209|ENST00000304402|GPR22 ENSG00000172209|ENST00000304402|GPR22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3370361328125 2 611.336967 1220.65938 0.50856 0.0003109 -0.96178 -0.00058797 -0.45322 -0.00027707 611.3364578980239 69.931 0.48235 69.962 69.765 70.247 0.030914 52 24 3 0 0 0 0.50944 1 38467 38467 15.847 1.4418 1 8459200 64236 8192 42734 43696 75009 75009 0.05787765925174426 TIFKFVEAY 9 Unmodified _TIFKFVEAY_ 0 0 0 ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3002319335938 2 559.30005 1116.58555 0.13873 7.7594E-05 -0.7908 -0.0004423 -0.65207 -0.0003647 559.2996625541704 69.544 0.52555 69.065 68.742 69.267 -0.47903 41 22 2 0 0 0 0.30562 1 37947 37947 16.942 2.104 1 1009000 64237 13264 42735 43697 75010 75010 0.03191797762860915 TIFNSSDRFS 10 Unmodified _TIFNSSDRFS_ 0 0 0 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29 REV__nc|ENSG00000140265|Q8IWY8-2|ZSCAN29 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.751953125 2 587.280377 1172.5462 0.4998 0.00029352 3.842 0.0022563 4.3418 0.0025498 587.2814622924872 49.617 0.24791 49.617 49.487 49.735 0 14 10 2 0 0 0 0.18565 1 27324 27324 34.932 12.274 1 898530 + 64238 20455 42736 43698 75011 75011 -0.03316954258662008 TIFRYGPF 8 Unmodified _TIFRYGPF_ 0 0 0 REV__ENST00000339121.9_1_7:120596408-120596513:+|nuORF REV__ENST00000339121.9_1_7:120596408-120596513:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7660522460938 2 500.766178 999.517802 NaN NaN NaN NaN NaN NaN NaN 4.3943 1 4.3214 3.8214 4.8214 -0.072869 0 0 0 0.97444 1 2173 2173 0.79363 0 1 + 64239 25679 42737 43699 75012 75012 0.018023926227101583 TIGASILL 8 Unmodified _TIGASILL_ 0 0 0 nc|ENSG00000183853|Q96J84-3|KIRREL1;ENSG00000183853|ENST00000359209|KIRREL1;nc|ENSG00000183853|Q96J84-2|KIRREL1 nc|ENSG00000183853|Q96J84-3|KIRREL1 nc|ENSG00000183853|Q96J84-3|KIRREL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2497253417969 2 394.249829 786.485105 -0.033467 -1.3194E-05 0.31321 0.00012348 0.27974 0.00011029 394.24990169885024 69.892 0.3135 69.413 69.223 69.536 -0.47903 22 13 2 0 0 0 0.50586 1 38197 38197 34.187 0 1 1938100 64240 9203 42738 43700 75013 75013 0.0833218549985304 TIGDHMMHAL 10 Unmodified _TIGDHMMHAL_ 0 0 0 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.8450927734375 3 375.844171 1124.51068 1.0407 0.00039115 -1.5328 -0.00057608 -0.49205 -0.00018493 375.8439083939638 22.5 0.3021 19.722 19.554 19.857 -2.7784 38 16 3 0 0 0 0.60623 1 12063 12063 6.1918 1.4759 1 3606700 + 64241 21131 42739 43701 75014 75014 -0.04659031311689432 TIGDHMMHAL 10 Unmodified _TIGDHMMHAL_ 0 0 0 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 REV__nc|ENSG00000152670|Q9NQI0-3|DDX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.1791687011719 3 375.844171 1124.51068 0.64055 0.00024075 -0.31942 -0.00012005 0.32113 0.00012069 375.8440628426744 23.117 0.24339 20.339 20.186 20.429 -2.7784 24 19 2 0 0 0 0.6606 1 12437 12437 6.6304 1.5829 1 9081800 + 64242 21131 42739 43701 75015 75015 -0.04659031311689432 TIGEHIVYRL 10 Unmodified _TIGEHIVYRL_ 0 0 0 ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2310485839844 3 400.896029 1199.66626 0.74106 0.00029709 -0.20925 -8.3886E-05 0.53181 0.0002132 400.89612128569644 46.017 0.37747 41.062 40.863 41.241 -4.9549 40 24 2 0 0 0 0.47869 1 28471 28471 17.443 7.8987 1 10493000 64243 10150 42740 43702 75016 75016 0.07441078805732104 TIGSLTII 8 Unmodified _TIGSLTII_ 0 0 0 REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2560119628906 2 409.255111 816.49567 0.35595 0.00014567 0.6881 0.00028161 1.044 0.00042728 409.25533490027914 63.274 0.39368 62.787 62.622 63.016 -0.48617 44 17 3 0 0 0 0.37649 1 34448 34448 46.921 0 1 11684000 + 64244 28170 42741 43703 75017 75017 0.08008168154299256 TIGSLTII 8 Unmodified _TIGSLTII_ 0 0 0 REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF REV__ENST00000512847.1_1_4:113347672-113349016:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2557067871094 2 409.255111 816.49567 1.0146 0.00041525 -0.22126 -9.055E-05 0.79338 0.0003247 409.25505081113096 70.209 0.43452 64.033 63.828 64.262 -6.1757 43 24 2 0 0 0 0.21786 1 45931 45931 67.035 3.4725 1 61828000 + 64245 28170 42741 43703 75018 75018 0.08008168154299256 TIHPHGVFYEK 11 Unmodified _TIHPHGVFYEK_ 0 0 0 nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-3|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH nc|ENSG00000089472|Q9BQS7-2|HEPH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.0222778320312 2 664.343312 1326.67207 -0.8664 -0.00057559 -2.1445 -0.0014247 -3.0109 -0.0020003 664.3418083195064 28.209 0.14219 28.209 28.109 28.251 0 9 6 2 0 0 0 0.29297 1 14571 14571 11.495 0.6952 1 794940 64246 1531 42742 43704 75019 75019 0.021801773174047412 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4831237792969 4 359.482989 1433.90285 0.16508 5.9345E-05 -0.26547 -9.5433E-05 -0.10039 -3.6088E-05 359.4828066793803 39.409 0.39492 39.409 39.135 39.53 0 36 18 3 0 0 0 0.72607 1 21129 21129 0 0 1 2719800 64247 16039 42743 43705 75020 75020 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.4835510253906 4 359.482989 1433.90285 1.6762 0.00060257 -0.25087 -9.0184E-05 1.4253 0.00051238 359.4828326733797 79.963 2.1299 73.787 72.986 75.116 -6.1757 227 123 3 0 0 0 0.72607 3 52161 52161;52431;52559 0 0 1 62340000 64248 16039 42743 43705 75021;75022;75023 75021 0.20325287933292202 TIHRRKRRRR 10 Unmodified _TIHRRKRRRR_ 0 0 0 nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL nc|ENSG00000062650|Q7Z5K2-2|WAPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.4834289550781 4 359.482989 1433.90285 1.3385 0.00048116 -0.018621 -6.6938E-06 1.3198 0.00047446 359.482903402699 82.574 1.9681 76.398 75.677 77.645 -6.1757 337 108 4 0 0 0 0.72497 8 54484 53819;53963;54092;54227;54357;54484;54616;54752 0.12286 0.12286 1 112120000 64249 16039 42743 43705 75024;75025;75026;75027;75028;75029;75030;75031 75029 0.20325287933292202 TIHTSQSSN 9 Unmodified _TIHTSQSSN_ 0 0 0 REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7294616699219 2 487.73052 973.446488 -0.026145 -1.2752E-05 -2.5238 -0.0012309 -2.5499 -0.0012437 487.7293708597747 41.493 0.21946 41.19 41.067 41.287 -0.30304 23 9 3 0 0 0 0.38785 1 21983 21983 13.042 1.4022 1 16900000 + 64250 21120 42744 43706 75032 75032 -0.04129771872612764 TIHTSQSSN 9 Unmodified _TIHTSQSSN_ 0 0 0 REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C REV__nc|ENSG00000152457|Q96SD1-2|DCLRE1C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 487.73052 973.446488 0.28691 0.00013993 -2.6601 -0.0012974 -2.3732 -0.0011575 487.72934754815816 41.218 0.18282 41.216 41.096 41.279 -0.0017929 0.012733 -0.00010329 NaN 13.042 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3118200 + 64251 21120 42744 43706 -0.04129771872612764 TIHVKVQRNL 10 Unmodified _TIHVKVQRNL_ 0 0 0 ENST00000564702.1_1_15:30771228-30776788:+|nuORF ENST00000564702.1_1_15:30771228-30776788:+|nuORF ENST00000564702.1_1_15:30771228-30776788:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2471923828125 3 403.247173 1206.71969 -0.22702 -9.1544E-05 0.46601 0.00018792 0.23899 9.6371E-05 403.24735941771945 33.034 0.18261 33.064 32.957 33.14 0.029743 16 7 3 0 0 0 0.6966 1 17387 17387 1.5923 0 1 1302500 64252 15393 42745 43707 75033 75033 0.12459876308275852 TIIEKSSF 8 Unmodified _TIIEKSSF_ 0 0 0 REV__ENSG00000169255|ENST00000320474|B3GALNT1 REV__ENSG00000169255|ENST00000320474|B3GALNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7556762695312 2 462.755475 923.496398 0.70314 0.00032538 -0.24597 -0.00011383 0.45716 0.00021155 462.7552743195499 69.271 0.38265 69.271 69.084 69.467 0 40 16 4 0 0 0 0.14054 1 38561 38561 88.904 14.481 1 2290500 + 64253 22390 42746 43708 75034 75034 0.03158962803343002 TIIEKSSF 8 Unmodified _TIIEKSSF_ 0 0 0 REV__ENSG00000169255|ENST00000320474|B3GALNT1 REV__ENSG00000169255|ENST00000320474|B3GALNT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 462.755475 923.496398 0.70314 0.00032538 -0.24597 -0.00011383 0.45716 0.00021155 462.7552743195499 69.271 0.38265 69.271 69.084 69.467 0 0 0 NaN 88.904 40 16 4 NaN NaN NaN NaN 0 NaN NaN 0 2290500 + 64254 22390 42746 43708 0.03158962803343002 TIIFPLPL 8 Unmodified _TIIFPLPL_ 0 0 0 REV__ENST00000424347.6_2_9:80885921-80886107:+|nuORF REV__ENST00000424347.6_2_9:80885921-80886107:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2932739257812 2 457.291497 912.568441 3.6956 0.0016899 1.8451 0.00084376 5.5407 0.0025337 457.29233792555186 97.962 0.4659 97.944 97.762 98.228 -0.018196 47 16 4 0 0 0 0.71616 2 54388 54388;54487 15.768 0 1 23238000 + 64255 26877 42747 43709 75035;75036 75035 0.1086592194772038 TIIGFFKIS 9 Unmodified _TIIGFFKIS_ 0 0 0 REV__ENST00000359015.4_1_6:136901492-136904739:-|nuORF REV__ENST00000359015.4_1_6:136901492-136904739:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.7825317382812 2 513.305136 1024.59572 1.1545 0.00059259 0.084927 4.3594E-05 1.2394 0.00063619 513.3052826084925 88.211 0.60988 82.035 81.782 82.392 -6.1757 50 33 2 0 0 0 0.16785 1 58180 58180 7.2892 0 1 8675100 + 64256 25884 42748 43710 75037 75037 0.08440405488090619 TIILSLFVK 9 Unmodified _TIILSLFVK_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523206.5_1_8:95850795-95884149:+|nuORF;ENST00000524333.5_1_8:95877920-95879436:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2819213867188 2 517.336436 1032.65832 0.19105 9.8839E-05 -0.92833 -0.00048026 -0.73727 -0.00038142 517.3357161175404 77.134 0.28968 77.184 77.057 77.346 0.05011 25 11 3 0 0 0 0.20727 1 42520 42520 1.8442 0 1 2076000 64257 7269 42749 43711 75038 75038 0.1432955155628406 TIILVRSSGS 10 Unmodified _TIILVRSSGS_ 0 0 0 REV__ENST00000421800.1_1_13:29173910-29174120:+|nuORF REV__ENST00000421800.1_1_13:29173910-29174120:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.808837890625 2 516.806031 1031.59751 3.7082 0.0019164 1.0157 0.00052492 4.7239 0.0024413 516.8064223465873 98.198 0.23959 98.179 98.015 98.254 -0.018196 20 8 3 0 0 0 0.32072 1 54536 54536 26.268 9.3258 1 1444600 + 64258 26847 42750 43712 75039 75039 0.08297414506046152 TIILVRSSGS 10 Unmodified _TIILVRSSGS_ 0 0 0 REV__ENST00000421800.1_1_13:29173910-29174120:+|nuORF REV__ENST00000421800.1_1_13:29173910-29174120:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 516.806031 1031.59751 3.7082 0.0019164 1.0157 0.00052492 4.7239 0.0024413 516.8064223465873 98.198 0.23959 98.179 98.015 98.254 -0.018196 0 0 NaN 26.268 20 8 3 NaN NaN NaN NaN 0 NaN NaN 0 1444600 + 64259 26847 42750 43712 0.08297414506046152 TIIPHDEWK 9 Unmodified _TIIPHDEWK_ 0 0 0 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 ENSG00000154479|ENST00000447353|CFAP210 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2689819335938 2 569.798206 1137.58186 0.035451 2.02E-05 -1.5063 -0.00085826 -1.4708 -0.00083806 569.7981717983796 41.461 0.27581 41.158 40.986 41.262 -0.30304 36 12 4 0 0 0 0.209 1 21996 21996 7.2892 2.0586 1 33372000 64260 6328 42751 43713 75040 75040 0.01857127988978391 TIIQLQPKSS 10 Unmodified _TIIQLQPKSS_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8287353515625 2 557.826963 1113.63937 0.63495 0.00035419 2.5297 0.0014111 3.1646 0.0017653 557.8288876061 90.919 0.20744 90.424 90.379 90.586 -0.49458 20 14 2 0 0 0 0.48505 1 49719 49719 17.113 1.2657 1 989810 64261 3067 42752 43714 75041 75041 0.08709970194558991 TIISSLPEF 9 Unmodified _TIISSLPEF_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7744140625 2 503.776408 1005.53826 0.061971 3.122E-05 -1.151 -0.00057986 -1.089 -0.00054864 503.77550235462434 84.115 0.37889 83.615 83.485 83.864 -0.49961 34 16 3 0 0 0 0.14602 1 46050 46050 28.487 0 1 2279600 64262 1161 42753 43715 75042 75042 0.03571518491855841 TIKEIWFSF 9 Unmodified _TIKEIWFSF_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8775329589844 3 390.877975 1169.6121 0.54356 0.00021247 -0.64634 -0.00025264 -0.10278 -4.0174E-05 390.8775886419797 52.699 0.28005 52.635 52.502 52.782 -0.063423 24 13 2 0 0 0 0.54444 1 28548 28548 2.7352 0.64919 1 6598500 64263 5089 42754 43716 75043 75043 0.03407486654191416 TIKIENMPLD 10 Unmodified _TIKIENMPLD_ 0 0 0 ENST00000465304.5_1_3:122313378-122329447:+|nuORF ENST00000465304.5_1_3:122313378-122329447:+|nuORF ENST00000465304.5_1_3:122313378-122329447:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3155517578125 2 587.312832 1172.61111 1.3708 0.00080512 3.6901 0.0021673 5.061 0.0029724 587.3144016860689 97.361 0.23434 91.186 91.044 91.279 -6.1757 29 12 3 0 0 0 0.16361 1 64523 64523 38.176 3.7738 1 19420000 64264 13735 42755 43717 75044 75044 0.031709042229749684 TIKLLEKV 8 Unmodified _TIKLLEKV_ 0 0 0 REV__ENSG00000103351|ENST00000576634|CLUAP1 REV__ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.3126831054688 2 472.312961 942.611368 0.40349 0.00019057 -0.3361 -0.00015874 0.067391 3.183E-05 472.31266167388367 71.904 0.42159 71.943 71.727 72.149 0.039024 45 20 3 0 0 0 0.44629 1 39535 39535 39.957 0 1 5737400 + 64265 18303 42756 43718 75045 75045 0.13776692005137647 TIKNKRGP 8 Unmodified _TIKNKRGP_ 0 0 0 REV__ENST00000233156.8_2_2:188418967-188419015:-|nuORF REV__ENST00000233156.8_2_2:188418967-188419015:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.2845458984375 2 457.282526 912.550499 NaN NaN NaN NaN NaN NaN NaN 92.213 1 86.037 85.537 86.537 -6.1757 0 0 0 0.69365 1 60974 60974 28.487 3.813 1 + 64266 24819 42757 43719 75046 75046 0.09072599745559273 TIKQTISPG 9 Unmodified _TIKQTISPG_ 0 0 0 NAV3|p.V537I|1|0.16|ENSG00000067798|chr12:78007147-78007147|G/A|missense_variant NAV3|p.V537I|1|0.16|ENSG00000067798|chr12:78007147-78007147|G/A|missense_variant NAV3|p.V537I|1|0.16|ENSG00000067798|chr12:78007147-78007147|G/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2397766113281 2 472.7742 943.533846 0.70223 0.000332 -0.50967 -0.00024096 0.19256 9.1037E-05 472.7737551126084 49.707 0.25181 49.707 49.582 49.834 0 16 11 2 0 0 0 0.17275 1 27348 27348 21.747 12.399 1 2845100 64267 16004 42758 43720 75047 75047 0.05982054068954312 TIKTKRAKRK 10 Unmodified _TIKTKRAKRK_ 0 0 0 REV__nc|ENSG00000114439|Q8WY36-2|BBX REV__nc|ENSG00000114439|Q8WY36-2|BBX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.4113159179688 2 615.411863 1228.80917 NaN NaN NaN NaN NaN NaN NaN 15.721 1 15.727 15.227 16.227 0.0057774 0 0 0 1.0061 1 7848 7848 0 0 1 + 64268 18913 42759 43721 75048 75048 0.20392130987625023 TILDANEEF 9 Unmodified _TILDANEEF_ 0 0 0 nc|ENSG00000113734|Q12981-2|BNIP1;ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 nc|ENSG00000113734|Q12981-2|BNIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2871704101562 2 526.250754 1050.48696 0.36884 0.0001941 -2.488 -0.0013093 -2.1192 -0.0011152 527.2496355488488 72.119 0.41128 72.119 71.923 72.334 0 37 18 3 0 0 0 0.18118 1 40202 40202 12.532 0 1 1619000 64269 2995 42760 43722 75049 75049 -0.03626850272848969 TILEILPEL 9 Unmodified _TILEILPEL_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.81591796875 2 520.815533 1039.61651 0.89175 0.00046444 -0.1057 -5.5048E-05 0.78606 0.00040939 520.8155706520078 100.54 0.16042 94.368 94.27 94.431 -6.1757 22 9 3 0 0 0 0.0082281 1 67235 67235 92.822 11.209 1 122400000 64270 637 42761 43723 75050 75050 0.09828951077088277 TILEKCFKV 9 Carbamidomethyl (C) _TILEKC(Carbamidomethyl (C))FKV_ TILEKC(1)FKV TILEKC(48)FKV 0 1 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3213500976562 2 569.32046 1136.62637 0.87529 0.00049832 0.27221 0.00015497 1.1475 0.00065329 569.3205453022193 48.778 0.23479 43.382 43.24 43.475 -5.3961 20 13 2 0 0 0 0.044296 1 30459 30459 47.594 14.809 1 27558000 64271 4692 42762 43724 75051 75051 480 0.06351815810808148 TILEVDDSDE 10 Unmodified _TILEVDDSDE_ 0 0 0 REV__ENST00000435954.2_1_6:54350144-54350642:-|nuORF REV__ENST00000435954.2_1_6:54350144-54350642:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7299194335938 2 568.253691 1134.49283 0.40812 0.00023192 -1.2893 -0.00073265 -0.88118 -0.00050073 568.2528319544035 78.861 0.30928 78.375 78.265 78.574 -0.48596 23 12 2 0 0 0 0.23325 1 43150 43150 10.074 2.1638 1 853630 + 64272 27024 42763 43725 75052 75052 -0.06903796551841879 TILKKKPG 8 Unmodified _TILKKKPG_ 0 0 0 ENST00000257663.3_1_7:77423425-77423503:-|nuORF ENST00000257663.3_1_7:77423425-77423503:-|nuORF ENST00000257663.3_1_7:77423425-77423503:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.59375 1 884.592764 883.585488 1.0609 0.0009385 0.24111 0.00021328 1.302 0.0011518 884.5926873617935 105.28 0.25874 99.102 98.947 99.206 -6.1757 168 63 4 0 0 0 0.80975 1 70562 70562 0.79363 0 1 877460000 64273 11194 42764 43726 75053 75053 0.13903842553520462 TILNFAITF 9 Unmodified _TILNFAITF_ 0 0 0 REV__ENSG00000173988|ENST00000595396|LRRC63 REV__ENSG00000173988|ENST00000595396|LRRC63 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2948608398438 2 520.294768 1038.57498 1.336 0.00069513 -2.9177 -0.001518 -1.5816 -0.00082292 520.2938889958363 95.407 0.27557 89.231 89.04 89.316 -6.1757 23 15 2 0 0 0 0.028475 1 63193 63193 56.177 2.3442 1 10167000 + 64274 22762 42765 43727 75054 75054 0.05723815108422059 TILQGPHFL 9 Unmodified _TILQGPHFL_ 0 0 0 REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2932739257812 2 513.292559 1024.57057 0.27963 0.00014353 0.65358 0.00033548 0.93321 0.00047901 513.2929002343536 53.251 0.31753 53.187 53.044 53.361 -0.063423 39 15 3 0 0 0 0.042911 1 28939 28939 48.346 16.04 1 12006000 + 64275 27039 42766 43728 75055 75055 0.05926350685513171 TILVTLKQTH 10 Unmodified _TILVTLKQTH_ 0 0 0 ENST00000547751.5_1_12:45059243-45269664:-|nuORF;nc|ENSG00000184613|Q99435-4|NELL2;ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2 ENST00000547751.5_1_12:45059243-45269664:-|nuORF ENST00000547751.5_1_12:45059243-45269664:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.2355651855469 3 385.236163 1152.68666 NaN NaN NaN NaN NaN NaN NaN 52.317 1 52.317 51.817 52.817 0 0 0 0 1.0029 1 28948 28948 0.12286 0 1 64276 9278 42767 43729 75056 75056 0.1164224946558079 TIMESPYVMYK 11 Unmodified _TIMESPYVMYK_ 0 0 0 ENSG00000152578|ENST00000282499|GRIA4 ENSG00000152578|ENST00000282499|GRIA4 ENSG00000152578|ENST00000282499|GRIA4 MSMS AL20221201_MKP_PDAC_01 4 681.326904296875 2 681.327624 1360.6407 NaN NaN NaN NaN NaN NaN NaN 32.161 1 28.349 27.849 28.849 -3.8125 0 0 0 0.88164 1 18292 18292 8.1555 0 1 64277 6198 42768 43730 75057 75057 -0.025198998231871883 TIMTGLEAF 9 Unmodified _TIMTGLEAF_ 0 0 0 REV__ENSG00000021488|ENST00000023064|SLC7A9 REV__ENSG00000021488|ENST00000023064|SLC7A9 MSMS AL20221201_MKP_PDAC_01 4 491.7506408691406 2 491.749336 981.484119 NaN NaN NaN NaN NaN NaN NaN 91.092 1 84.916 84.416 85.416 -6.1757 0 0 0 0.33856 1 60206 60206 23.148 6.2061 1 + 64278 17109 42769 43731 75058 75058 -0.007363969313701091 TIMVTHSSTL 10 Unmodified _TIMVTHSSTL_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.82763671875 2 545.284074 1088.5536 0.65977 0.00035976 1.4428 0.00078674 2.1026 0.0011465 545.284969652992 66.965 0.24442 66.983 66.837 67.082 0.018028 22 11 2 0 0 0 0.23325 1 36797 36797 10.074 1.4806 1 5731400 + 64279 20268 42770 43732 75059 75059 0.012860620174024007 TINAAHVEY 9 Unmodified _TINAAHVEY_ 0 0 0 ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2542724609375 2 509.253631 1016.49271 -0.33874 -0.00017251 0.17849 9.0894E-05 -0.16026 -8.1611E-05 509.2535406954439 31.964 0.20307 31.964 31.84 32.043 0 19 9 3 0 0 0 0.10247 1 16651 16651 32.786 8.7651 1 3066900 64280 8787 42771 43733 75060 75060 -0.014877069705221402 TINAAHVEY 9 Unmodified _TINAAHVEY_ 0 0 0 ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM ENSG00000178952|ENST00000313511|TUFM MSMS AL20221201_MKP_PDAC_01 4 509.2539672851562 2 509.253631 1016.49271 NaN NaN NaN NaN NaN NaN NaN 36.358 1 32.165 31.665 32.665 -4.1928 0 0 0 0.046065 1 21224 21224 59.368 28.1 1 64281 8787 42771 43733 75061 75061 -0.014877069705221402 TINCDSIEQPL 11 Unmodified _TINCDSIEQPL_ 0 0 0 nc|ENSG00000188316|A6NNW6-2|ENO4;nc|ENSG00000188316|A6NNW6-4|ENO4;ENSG00000188316|ENST00000341276|ENO4 nc|ENSG00000188316|A6NNW6-2|ENO4 nc|ENSG00000188316|A6NNW6-2|ENO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.7944946289062 2 616.795003 1231.57545 0.90689 0.00055936 -1.9082 -0.001177 -1.0013 -0.00061762 616.7939243308365 70.355 0.33289 70.391 70.193 70.526 0.035515 26 15 3 0 0 0 0.65846 1 38758 38758 8.1555 0.54658 1 2038700 64282 9648 42772 43734 75062 75062 -0.031071780246520575 TINHDGDPE 9 Unmodified _TINHDGDPE_ 0 0 0 REV__nc|ENSG00000130810|Q9NQ55-2|PPAN REV__nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2156372070312 2 499.214703 996.414853 0.97064 0.00048456 -1.2183 -0.0006082 -0.24766 -0.00012364 499.2140845194467 83.061 0.54562 76.885 76.624 77.17 -6.1757 45 29 2 0 0 0 0.41742 1 54554 54554 11.64 2.2929 1 15796000 + 64283 19745 42773 43735 75063 75063 -0.08349764626552769 TINSSLFT 8 Unmodified _TINSSLFT_ 0 0 0 REV__nc|ENSG00000144837|Q53H76-4|PLA1A REV__nc|ENSG00000144837|Q53H76-4|PLA1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7324829101562 2 441.732 881.449448 NaN NaN NaN NaN NaN NaN NaN 90.852 1 90.357 89.857 90.857 -0.49457 0 0 0 0.83301 1 49661 49661 21.747 3.6117 1 + 64284 20740 42774 43736 75064 75064 0.0039810325220059894 TINVTGGLEL 10 Unmodified _TINVTGGLEL_ 0 0 0 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.784912109375 2 508.784764 1015.55498 0.76256 0.00038798 -0.34641 -0.00017625 0.41614 0.00021173 508.7845758342036 49.762 0.43921 49.762 49.487 49.926 0 60 19 4 0 0 0 0.022967 1 27371 27371 72.968 1.0457 1 76091000 + 64285 17879 42775 43737 75065 75065 0.04782019377819324 TINVTGGLEL 10 Unmodified _TINVTGGLEL_ 0 0 0 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7843017578125 2 508.784764 1015.55498 0.36221 0.00018428 -1.0133 -0.00051556 -0.65112 -0.00033128 508.78444249961456 56.299 0.48393 50.322 50.098 50.581 -5.9769 64 27 3 0 0 0 0.42143 1 35908 35908 20.415 1.1575 1 97569000 + 64286 17879 42775 43737 75066 75066 0.04782019377819324 TINVTGGLEL 10 Unmodified _TINVTGGLEL_ 0 0 0 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.784764 1015.55498 0.76256 0.00038798 -0.34641 -0.00017625 0.41614 0.00021173 508.7845758342036 49.762 0.43921 49.762 49.487 49.926 0 0 0 NaN 72.968 60 19 4 NaN NaN NaN NaN 0 NaN NaN 0 76091000 + 64287 17879 42775 43737 0.04782019377819324 TINWLASWSF 10 Unmodified _TINWLASWSF_ 0 0 0 REV__ENSG00000160445|ENST00000291900|ZER1 REV__ENSG00000160445|ENST00000291900|ZER1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2320251464844 3 408.873113 1223.59751 -0.45284 -0.00018515 1.0872 0.00044454 0.6344 0.00025939 408.8747574007196 36.994 0.12635 37.015 36.963 37.089 0.021545 7 5 2 0 0 0 0.23634 1 19604 19604 1.7423 0 1 296490 + 64288 21544 42776 43738 75067 75067 -0.005345854939832861 TIPHCRICL 9 Unmodified _TIPHCRICL_ 0 0 0 ENST00000488213.5_1_3:184082670-184082769:+|nuORF ENST00000488213.5_1_3:184082670-184082769:+|nuORF ENST00000488213.5_1_3:184082670-184082769:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.2799682617188 2 528.278072 1054.54159 NaN NaN NaN NaN NaN NaN NaN 77.641 1 71.465 70.965 71.965 -6.1757 0 0 0 0.29524 1 50792 50792 25.399 2.2509 1 64289 14217 42777 43739 75068 75068 0.016501667932061537 TIPITPAFL 9 Unmodified _TIPITPAFL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MSMS AL20221201_MKP_PDAC_01 4 486.7920837402344 2 486.791861 971.569169 NaN NaN NaN NaN NaN NaN NaN 99.869 1 93.694 93.194 94.194 -6.1757 0 0 0 0.071041 1 66641 66641 50.855 14.811 1 64290 10367 42778 43740 75069 75069 0.0822471659673738 TIPLAFPT 8 Unmodified _TIPLAFPT_ 0 0 0 REV__ENST00000495460.1_1_13:25875911-25891836:+|nuORF REV__ENST00000495460.1_1_13:25875911-25891836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.25 2 430.249829 858.485105 1.7611 0.00075772 -1.3622 -0.00058611 0.39888 0.00017162 430.2492140381964 100.84 0.11719 94.666 94.584 94.701 -6.1757 10 7 2 0 0 0 0.28079 1 67544 67544 57.471 3.8958 1 20593000 + 64291 20410 42779 43741 75070 75070 0.050201854998590534 TIPLKCNRG 9 Unmodified _TIPLKCNRG_ 0 0 0 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 REV__nc|ENSG00000176438|Q6ZMZ3-2|SYNE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7836608886719 2 501.281669 1000.54878 0.45238 0.00022677 0.11305 5.6671E-05 0.56544 0.00028344 501.28063877261866 38.631 0.51476 34.263 34.012 34.527 -4.3689 103 32 4 0 0 0 0.16226 2 22870 22870;22996 26.884 2.3076 1 101280000 + 64292 22930 42780 43742 75071;75072 75071 0.04853222665292378 TIPLLAAKL 9 Unmodified _TIPLLAAKL_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.5701904296875 2 470.315503 938.616454 0.077427 3.6415E-05 -0.16466 -7.744E-05 -0.087229 -4.1025E-05 470.3152289960619 53.133 0.1965 53.07 52.961 53.157 -0.063423 15 9 2 0 0 0 0.21564 1 28844 28844 1.6526 0 1 1304800 64293 7405 42781 43743 75073 75073 0.14468995867730428 TIPQETFRKRW 11 Unmodified _TIPQETFRKRW_ 0 0 0 REV__ENSG00000198839|ENST00000361822|ZNF277 REV__ENSG00000198839|ENST00000361822|ZNF277 MSMS AL20221201_MKP_PDAC_01 4 487.9369506835938 3 487.936887 1460.78883 NaN NaN NaN NaN NaN NaN NaN 24.628 1 21.745 21.245 22.245 -2.8831 0 0 0 0.9428 1 13423 13423 0.50596 0 1 + 64294 24074 42782 43744 75074 75074 0.07686915537146888 TIPRGRLF 8 Unmodified _TIPRGRLF_ 0 0 0 REV__ENSG00000149499|ENST00000394773|EML3 REV__ENSG00000149499|ENST00000394773|EML3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.2731323242188 2 480.292894 958.571235 0.3477 0.000167 -0.081366 -3.9079E-05 0.26633 0.00012792 480.29294306436475 61.094 0.17733 61.05 60.927 61.104 -0.04351 14 8 2 0 0 0 8.7369 1 33273 33273 12.532 0.89125 1 2264900 + 64295 21000 42783 43745 75075 75075 0.09029190125238529 TIPRRWLKFH 10 Unmodified _TIPRRWLKFH_ 0 0 0 REV__ENST00000488084.1_1_2:96861046-96873890:-|nuORF REV__ENST00000488084.1_1_2:96861046-96873890:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.715087890625 2 677.398756 1352.78296 NaN NaN NaN NaN NaN NaN NaN 57.625 1 57.136 56.636 57.636 -0.48974 0 0 0 0.92825 1 31319 31319 6.7232 0.99131 1 + 64296 17729 42784 43746 75076 75076 0.12067861816149161 TIPYLTALL 9 Unmodified _TIPYLTALL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.8057556152344 2 502.804968 1003.59538 1.3736 0.00069067 -1.6251 -0.00081712 -0.25149 -0.00012645 502.805168173419 101.07 0.15908 94.898 94.815 94.974 -6.1757 24 8 4 0 0 0 0.023164 1 67760 67760 60.39 6.814 1 60901000 64297 16219 42785 43747 75077 75077 0.09372985768220587 TIQKLKVKTI 10 Unmodified _TIQKLKVKTI_ 0 0 0 REV__ENST00000498228.1_1_1:55014277-55063089:+|nuORF REV__ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3927001953125 2 586.392273 1170.76999 1.5028 0.00088122 0.13328 7.8152E-05 1.6361 0.00095937 586.3922999880523 104.2 0.17311 98.021 97.949 98.122 -6.1757 26 12 3 0 0 0 0.72247 1 69783 69783 0.40072 0 1 7097400 + 64298 21639 42786 43748 75078 75078 0.19143985913433426 TIRAFRHETR 10 Unmodified _TIRAFRHETR_ 0 0 0 nc|ENSG00000069431|O60706|ABCC9;ENSG00000069431|ENST00000261200|ABCC9 nc|ENSG00000069431|O60706|ABCC9 nc|ENSG00000069431|O60706|ABCC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8580932617188 2 643.857452 1285.70035 0.6119 0.00039398 0.49488 0.00031863 1.1068 0.00071261 643.8574806342463 81.19 0.37064 80.698 80.539 80.91 -0.49247 47 23 3 0 0 0 0.62068 1 44417 44417 10.074 0 1 5754500 64299 1004 42787 43749 75079 75079 0.06892920017344295 TIRANWKEF 9 Unmodified _TIRANWKEF_ 0 0 0 REV__nc|ENSG00000263001|P78347-2|GTF2I REV__nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8778991699219 3 388.876857 1163.60874 -0.01125 -4.3747E-06 -0.0089329 -3.4738E-06 -0.020182 -7.8485E-06 388.8767262003872 17.953 0.35761 17.959 17.826 18.183 0.0060463 46 24 2 0 0 0 0.57331 1 9136 9136 2.9952 0 1 1580100 + 64300 24595 42788 43750 75080 75080 0.033482366001635455 TIRMWLCKRRH 11 Unmodified _TIRMWLCKRRH_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.7105407714844 4 375.710417 1498.81256 0.68273 0.00025651 -0.42978 -0.00016147 0.25295 9.5037E-05 375.71041021064855 14.682 0.088057 12.18 12.119 12.207 -2.5029 27 12 3 0 0 0 0.74046 1 7462 7462 0.45452 0.046251 1 3346500 64301 9845 42789 43751 75081 75081 0.0831073449833184 TIRPSSSVM 9 Oxidation (M) _TIRPSSSVM(Oxidation (M))_ TIRPSSSVM(1) TIRPSSSVM(64) 0 0 1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.257080078125 2 497.255317 992.49608 1.2444 0.0006188 0.031181 1.5505E-05 1.2756 0.00063431 497.25568255851397 20.82 0.32535 18.127 17.977 18.302 -2.693 47 19 3 0 0 0 0.01958 2 11089 11089;11196 63.961 24.003 1 7624000 64302 5451 42790 43752 75082;75083 75082 1004 -0.0004678018815411633 TIRPSSSVM 9 Unmodified _TIRPSSSVM_ 0 0 0 nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 nc|ENSG00000142910|Q9GZM7-3|TINAGL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2580871582031 2 489.257859 976.501166 1.0458 0.00051167 -0.38616 -0.00018893 0.65964 0.00032273 489.25798113167014 32.393 0.31869 28.537 28.352 28.67 -3.8562 32 18 2 0 0 0 0.040683 1 18400 18400 49.554 21.067 1 18005000 64303 5451 42790 43753 75084 75084 0.011975236744547146 TIRQTIVKL 9 Unmodified _TIRQTIVKL_ 0 0 0 nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4;ENST00000565483.1_1_16:31045337-31045892:+|nuORF;ENST00000478150.1_1_16:31045126-31045651:+|nuORF;ENST00000487411.5_1_16:31044934-31045651:+|nuORF;ENST00000493902.5_1_16:31044585-31047064:+|nuORF nc|ENSG00000103496|Q12846-2|STX4 nc|ENSG00000103496|Q12846-2|STX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7305908203125 3 357.901003 1070.68118 0.22201 7.9457E-05 -3.6041 -0.0012899 -3.3821 -0.0012105 358.23272833029966 39.653 0.22651 39.658 39.522 39.748 0.0050545 20 10 3 0 0 0 0.21835 1 21106 21106 2.2828 0.19677 1 1657000 64304 2147 42791 43754 75085 75085 0.1486657067375745 TIRRQPWP 8 Unmodified _TIRRQPWP_ 0 0 0 ENST00000367602.7_1_1:180167664-180168105:+|nuORF ENST00000367602.7_1_1:180167664-180168105:+|nuORF ENST00000367602.7_1_1:180167664-180168105:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.301513671875 2 527.30125 1052.58795 NaN NaN NaN NaN NaN NaN NaN 19.608 1 19.616 19.116 20.116 0.0078487 0 0 0 0.97444 1 9979 9979 0.69038 0 1 64305 12244 42792 43755 75086 75086 0.06375691011180606 TISCMSPESL 10 Unmodified _TISCMSPESL_ 0 0 0 REV__ENST00000503716.5_1_4:151271196-151271256:-|nuORF REV__ENST00000503716.5_1_4:151271196-151271256:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2427368164062 2 534.241018 1066.46748 0.24278 0.0001297 3.7573 0.0020073 4.0001 0.002137 534.2427528911572 37.853 0.12189 37.853 37.764 37.885 0 11 5 4 0 0 0 0.66569 1 20181 20181 6.7232 0.96273 1 8040400 + 64306 28043 42793 43756 75087 75087 -0.0630926587959948 TISLDGVPFL 10 Unmodified _TISLDGVPFL_ 0 0 0 ENST00000533911.1_1_11:75154120-75160980:-|nuORF;ENST00000527322.5_1_11:75154120-75168815:-|nuORF;nc|ENSG00000158555|Q8WTR4-5|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;ENSG00000158555|ENST00000336898|GDPD5 ENST00000533911.1_1_11:75154120-75160980:-|nuORF ENST00000533911.1_1_11:75154120-75160980:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.297607421875 2 531.297507 1060.58046 0.25541 0.0001357 0.035127 1.8663E-05 0.29053 0.00015436 531.2975451583536 70.658 0.32171 70.18 70.089 70.411 -0.47735 35 21 2 0 0 0 0.19662 1 38742 38742 34.102 1.3168 1 3506000 64307 6596 42794 43757 75088 75088 0.05259493900257439 TISPIILYF 9 Unmodified _TISPIILYF_ 0 0 0 ENSG00000128699|ENST00000392349|ORMDL1 ENSG00000128699|ENST00000392349|ORMDL1 ENSG00000128699|ENST00000392349|ORMDL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8136596679688 2 533.812793 1065.61103 0.84264 0.00044981 0.024017 1.2821E-05 0.86666 0.00046263 533.8128875777988 101.44 0.16425 95.26 95.144 95.309 -6.1757 23 8 4 0 0 0 0.052168 1 68036 68036 44.407 0 1 57005000 64308 4086 42795 43758 75089 75089 0.08085272285279643 TISSGYSIHTY 11 Unmodified _TISSGYSIHTY_ 0 0 0 GBA|p.P524S|1|0.25|ENSG00000177628|chr1:155235036-155235036|G/A|missense_variant GBA|p.P524S|1|0.25|ENSG00000177628|chr1:155235036-155235036|G/A|missense_variant GBA|p.P524S|1|0.25|ENSG00000177628|chr1:155235036-155235036|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7957763671875 2 614.79586 1227.57717 0.40532 0.00024919 -0.41653 -0.00025608 -0.01121 -6.8917E-06 614.7957702172966 47.135 0.29111 47.135 46.999 47.29 0 33 13 3 0 0 0 0.28407 1 25771 25771 27.629 8.2669 1 10167000 64309 15900 42796 43759 75090 75090 -0.027518009444293057 TISSLWATL 9 Unmodified _TISSLWATL_ 0 0 0 ENST00000381340.7_1_12:26714749-26714785:-|nuORF ENST00000381340.7_1_12:26714749-26714785:-|nuORF ENST00000381340.7_1_12:26714749-26714785:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2765197753906 2 496.276575 990.538597 0.38743 0.00019227 0.7329 0.00036372 1.1203 0.000556 496.2770656903496 63.646 0.24127 63.16 62.992 63.233 -0.48617 21 10 3 0 0 0 0.095405 1 34696 34696 34.102 0 1 1553000 64310 12616 42797 43760 75091 75091 0.04294938211717181 TISVQSAFY 9 Unmodified _TISVQSAFY_ 0 0 0 ENST00000469079.5_1_21:33785131-33840206:+|nuORF;ENST00000464037.5_1_21:33825516-33887497:+|nuORF;nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C ENST00000469079.5_1_21:33785131-33840206:+|nuORF ENST00000469079.5_1_21:33785131-33840206:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2322082519531 2 508.258382 1014.50221 0.48072 0.00024433 -0.20056 -0.00010193 0.28017 0.0001424 508.25825233276714 59.195 0.47708 59.195 58.902 59.379 0 48 20 3 0 0 0 0.54444 1 32870 32870 4.756 0 1 14650000 64311 7560 42798 43761 75092 75092 -0.0044593868499305245 TITHTHLLM 9 Oxidation (M) _TITHTHLLM(Oxidation (M))_ TITHTHLLM(1) TITHTHLLM(57) 0 0 1 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.78662109375 2 541.786784 1081.55902 NaN NaN NaN NaN NaN NaN NaN 49.208 1 48.837 48.337 49.337 -0.37172 0 0 0 0.050352 1 26445 26445 57.471 7.5383 1 + 64312 17834 42799 43762 75093 75093 1829 0.021497855998632076 TITHTHLLM 9 Oxidation (M) _TITHTHLLM(Oxidation (M))_ TITHTHLLM(1) TITHTHLLM(60) 0 0 1 REV__ENSG00000089154|ENST00000300648|GCN1 REV__ENSG00000089154|ENST00000300648|GCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.787109375 2 541.786784 1081.55902 NaN NaN NaN NaN NaN NaN NaN 49.392 1 49 48.5 49.5 -0.3923 0 0 0 0.043758 1 26550 26550 60.39 16.531 1 + 64313 17834 42799 43762 75094 75094 1829 0.021497855998632076 TITPIVLYF 9 Unmodified _TITPIVLYF_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1066.898803710938 1 1066.61831 1065.61103 1.1811 0.0012598 -2.5209 -0.0026888 -1.3398 -0.001429 1066.6144675327823 100.65 0.11983 100.6 100.53 100.65 -0.04216 7 4 2 0 0 0 0.016184 1 55916 55916 67.344 6.9543 1 3137900 64314 8178 42800 43763 75095 75095 0.08085272285279643 TITRPNDSSY 10 Unmodified _TITRPNDSSY_ 0 0 0 nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL nc|ENSG00000293307|Q8IWF7|UBE2DNL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.274169921875 2 577.277835 1152.54112 NaN NaN NaN NaN NaN NaN NaN 21.921 1 21.921 21.421 22.421 0 0 0 0 0.81856 1 11129 11129 11.495 0 1 64315 16652 42801 43764 75096 75096 -0.029052581212681616 TITTVTGPSAF 11 Unmodified _TITTVTGPSAF_ 0 0 0 ENSG00000182168|ENST00000453304|UNC5C ENSG00000182168|ENST00000453304|UNC5C ENSG00000182168|ENST00000453304|UNC5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2911987304688 2 547.790047 1093.56554 0.17397 9.5301E-05 -0.27281 -0.00014944 -0.098837 -5.4142E-05 548.2924217021729 51.818 0.53284 51.759 51.494 52.027 -0.058918 41 25 2 0 0 0 0.48615 1 28132 28132 17.113 0.96379 1 15622000 64316 9025 42802 43765 75097 75097 0.022500020322468117 TIVAVTKVI 9 Unmodified _TIVAVTKVI_ 0 0 0 ENST00000563894.1_1_15:75090907-75091078:+|nuORF ENST00000563894.1_1_15:75090907-75091078:+|nuORF ENST00000563894.1_1_15:75090907-75091078:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.3138122558594 2 472.312961 942.611368 1.0437 0.00049294 -0.28058 -0.00013252 0.76309 0.00036042 472.3127149836429 87.659 0.72494 81.483 81.075 81.8 -6.1757 58 39 2 0 0 0 0.032796 1 57980 57980 53.833 4.2785 1 14977000 64317 15372 42803 43766 75098 75098 0.13776692005137647 TIVDMSYAGF 10 Unmodified _TIVDMSYAGF_ 0 0 0 REV__ENSG00000106258|ENST00000222982|CYP3A5 REV__ENSG00000106258|ENST00000222982|CYP3A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.257080078125 2 552.257525 1102.5005 0.37082 0.00020479 3.6798 0.0020322 4.0506 0.002237 552.2581575340411 76.229 0.2636 75.75 75.571 75.835 -0.47945 16 10 2 0 0 0 0.68719 1 41728 41728 4.3292 1.44 1 304800 + 64318 18495 42804 43767 75099 75099 -0.04665315765282685 TIVIDLPD 8 Unmodified _TIVIDLPD_ 0 0 0 REV__ENST00000400864.3_1_19:55236001-55309429:+|nuORF;REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2510986328125 2 443.250026 884.485499 -0.38216 -0.00016939 1.1169 0.00049506 0.73472 0.00032567 443.2507303958183 27.084 0.14644 27.084 26.992 27.139 0 11 6 2 0 0 0 0.74163 1 13932 13932 13.508 0 1 1938000 + 64319 26601;29546 42805 43768 75100 75100 0.03863560429056179 TIVKRIGSLK 10 Unmodified _TIVKRIGSLK_ 0 0 0 REV__nc|ENSG00000291110|Q309B1|TRIM16L REV__nc|ENSG00000291110|Q309B1|TRIM16L MSMS AL20221201_MKP_PDAC_01 4 372.2500305175781 3 372.248403 1113.72338 NaN NaN NaN NaN NaN NaN NaN 86.048 1 79.872 79.372 80.372 -6.1757 0 0 0 0.8703 1 56710 56710 9.2438 0 1 + 64320 24365 42806 43769 75101 75101 0.17106546082118257 TIVLMMKF 8 Unmodified _TIVLMMKF_ 0 0 0 nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A nc|ENSG00000141837|O00555-5|CACNA1A nc|ENSG00000141837|O00555-5|CACNA1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7769470214844 2 491.776842 981.539131 NaN NaN NaN NaN NaN NaN NaN 82.007 1 82.007 81.507 82.507 0 0 0 0 0.97444 1 45506 45506 2.5775 0 1 64321 5376 42807 43770 75102 75102 0.047623183355653964 TIVNIQVAF 9 Unmodified _TIVNIQVAF_ 0 0 0 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7935791015625 2 502.792392 1003.57023 0.93914 0.00047219 1.1417 0.00057403 2.0808 0.0010462 502.7924448582766 91.429 0.62487 85.253 84.956 85.581 -6.1757 72 34 3 0 0 0 0.0090948 3 60374 60374;60503;60640 85.272 39.251 1 20146000 64322 1575 42808 43771 75103;75104;75105 75103 0.06858930965654508 TIVPDGTLSID 11 Unmodified _TIVPDGTLSID_ 0 0 0 REV__nc|ENSG00000087237|P11597-2|CETP REV__nc|ENSG00000087237|P11597-2|CETP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.8003540039062 2 565.800611 1129.58667 -0.12896 -7.2968E-05 0.38575 0.00021826 0.25678 0.00014529 565.8008193079318 29.197 0.26531 29.197 29.063 29.328 0 30 12 3 0 0 0 0.21511 1 15093 15093 31.268 1.8312 1 6027500 + 64323 17780 42809 43772 75106 75106 0.027059673411031326 TIVPLLIIF 9 Unmodified _TIVPLLIIF_ 0 0 0 REV__ENST00000262316.10_1_16:108130-108244:-|nuORF REV__ENST00000262316.10_1_16:108130-108244:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.8411865234375 2 514.841354 1027.66815 -0.42295 -0.00021775 0.066116 3.4039E-05 -0.35683 -0.00018371 514.8413941252962 102.99 0.096542 102.94 102.88 102.98 -0.047928 5 3 2 0 0 0 0.58865 1 57216 57216 2.0598 0 1 3101400 + 64324 25017 42810 43773 75107 75107 0.15542739561669805 TIVPLLIIF 9 Unmodified _TIVPLLIIF_ 0 0 0 REV__ENST00000262316.10_1_16:108130-108244:-|nuORF REV__ENST00000262316.10_1_16:108130-108244:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.841354 1027.66815 -0.42295 -0.00021775 0.066116 3.4039E-05 -0.35683 -0.00018371 514.8413941252962 102.99 0.096542 102.94 102.88 102.98 -0.047928 0 0 NaN 2.0598 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3101400 + 64325 25017 42810 43773 0.15542739561669805 TIVPLLYGT 9 Unmodified _TIVPLLYGT_ 0 0 0 REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.7899780273438 2 488.789318 975.564084 0.54362 0.00026571 0.014011 6.8483E-06 0.55763 0.00027256 488.7893656364394 74.255 0.29225 74.299 74.116 74.409 0.043983 31 12 3 0 0 0 0.026094 1 40908 40908 57.471 3.8958 1 4849300 + 64326 28441 42811 43774 75108 75108 0.075324127341446 TIVPLLYGT 9 Unmodified _TIVPLLYGT_ 0 0 0 REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF REV__ENST00000530514.5_1_17:45668242-45699283:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.789318 975.564084 0.54362 0.00026571 0.014011 6.8483E-06 0.55763 0.00027256 488.7893656364394 74.255 0.29225 74.299 74.116 74.409 0.043983 0.008225 -0.00010571 NaN 57.471 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4849300 + 64327 28441 42811 43774 0.075324127341446 TIVRARPS 8 Unmodified _TIVRARPS_ 0 0 0 REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF REV__ENST00000438808.1_1_1:11938291-11938936:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 899.2142944335938 1 899.542126 898.534849 1.878 0.0016893 -3.4357 -0.0030906 -1.5577 -0.0014012 899.5392961306604 82.066 0.26254 82.128 82.008 82.27 0.062004 17 10 2 0 0 0 8.7369 1 45331 45331 2.5775 0 1 6182600 + 64328 27057 42812 43775 75109 75109 0.08152313228515595 TIWCIFLV 8 Unmodified _TIWCIFLV_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|163|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|163|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.77490234375 2 497.775157 993.53576 0.27872 0.00013874 -1.3985 -0.00069615 -1.1198 -0.00055741 497.774448017339 99.901 0.11662 99.743 99.669 99.785 -0.1575 9 3 3 0 0 0 0.57408 1 54542 54542 28.173 28.173 1 9787200 + 64329 16796 42813 43776 75110 75110 0.038733915532020546 TIWCIFLV 8 Unmodified _TIWCIFLV_ 0 0 0 REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|163|3|anti-sense REV__L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|163|3|anti-sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.775157 993.53576 0.27872 0.00013874 -1.3985 -0.00069615 -1.1198 -0.00055741 497.774448017339 99.901 0.11662 99.743 99.669 99.785 -0.1575 0 0 NaN 28.173 9 3 3 NaN NaN NaN NaN 0 NaN NaN 0 9787200 + 64330 16796 42813 43776 0.038733915532020546 TIWFAAGALL 10 Unmodified _TIWFAAGALL_ 0 0 0 REV__ENSG00000155254|ENST00000285605|MARVELD1 REV__ENSG00000155254|ENST00000285605|MARVELD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8038940429688 2 531.80276 1061.59097 NaN NaN NaN NaN NaN NaN NaN 53.581 1 53.517 53.017 54.017 -0.063423 0 0 0 0.51756 1 29069 29069 25.399 2.2509 1 + 64331 21264 42814 43777 75111 75111 0.06263521345317713 TIWKKRRKKKK 11 Unmodified _TIWKKRRKKKK_ 0 0 0 REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 750.5017700195312 2 750.504087 1498.99362 NaN NaN NaN NaN NaN NaN NaN 103.96 1 103.91 103.41 104.41 -0.048737 0 0 0 0.9435 1 57727 57727 0 0 1 + 64332 27066 42815 43778 75112 75112 0.2640831913818147 TIWVFDIII 9 Unmodified _TIWVFDIII_ 0 0 0 REV__ENSG00000168447|ENST00000343070|SCNN1B REV__ENSG00000168447|ENST00000343070|SCNN1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3255004882812 2 560.326068 1118.63758 1.001 0.00056087 -1.6891 -0.00094643 -0.6881 -0.00038556 560.3250270739321 68.946 0.34814 68.971 68.793 69.141 0.025146 40 16 3 0 0 0 0.087258 1 37857 37857 36.044 5.8194 1 4787400 + 64333 22312 42816 43779 75113 75113 0.08300961176610144 TIWVFDIII 9 Unmodified _TIWVFDIII_ 0 0 0 REV__ENSG00000168447|ENST00000343070|SCNN1B REV__ENSG00000168447|ENST00000343070|SCNN1B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.326068 1118.63758 1.001 0.00056087 -1.6891 -0.00094643 -0.6881 -0.00038556 560.3250270739321 68.946 0.34814 68.971 68.793 69.141 0.025146 -0.00059677 0.00061999 NaN 36.044 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4787400 + 64334 22312 42816 43779 0.08300961176610144 TIYASAKEKL 10 Unmodified _TIYASAKEKL_ 0 0 0 REV__nc|ENSG00000011332|Q92782-3|DPF1 REV__nc|ENSG00000011332|Q92782-3|DPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2163391113281 3 375.216768 1122.62847 0.29164 0.00010943 -0.15283 -5.7346E-05 0.13881 5.2083E-05 375.21666955778755 51.917 0.23087 51.483 51.381 51.612 -0.43367 27 11 3 0 0 0 0.5802 1 28019 28019 12.175 3.1985 1 2546900 + 64335 17055 42817 43780 75114 75114 0.07206567820298915 TIYDDQVTF 9 Unmodified _TIYDDQVTF_ 0 0 0 nc|ENSG00000117602|Q9UKA8-3|RCAN3;nc|ENSG00000117602|Q9UKA8-2|RCAN3;ENSG00000117602|ENST00000374395|RCAN3 nc|ENSG00000117602|Q9UKA8-3|RCAN3 nc|ENSG00000117602|Q9UKA8-3|RCAN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2579345703125 2 551.258579 1100.50261 0.49634 0.00027361 0.61643 0.00033981 1.1128 0.00061342 551.2584398629575 59.19 0.21726 59.19 59.045 59.262 0 16 8 2 0 0 0 0.30562 1 32948 32948 16.942 4.4107 1 1808800 64336 3325 42818 43781 75115 75115 -0.04362563755807969 TIYHHVLFT 9 Unmodified _TIYHHVLFT_ 0 0 0 REV__ENSG00000115760|ENST00000421745|BIRC6 REV__ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2022705078125 3 377.537953 1129.59203 1.3849 0.00052285 -0.98245 -0.00037091 0.40245 0.00015194 377.5379631114657 54.471 0.72318 48.605 48.158 48.881 -5.8653 104 43 4 0 0 0 0.39863 1 34283 34283 8.1555 0 1 239560000 + 64337 19005 42819 43782 75116 75116 0.03241735714209426 TIYHSSYSF 9 Unmodified _TIYHSSYSF_ 0 0 0 REV__nc|ENSG00000167377|P17027-2|ZNF23 REV__nc|ENSG00000167377|P17027-2|ZNF23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7568969726562 2 552.753464 1103.49238 NaN NaN NaN NaN NaN NaN NaN 60.31 1 60.31 59.81 60.81 0 0 0 0 0.46757 1 33630 33630 16.942 0 1 + 64338 22206 42820 43783 75117 75117 -0.05523126690377467 TIYKLEEQL 9 Unmodified _TIYKLEEQL_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5481872558594 3 379.544773 1135.61249 0.51824 0.0001967 3.2395 0.0012295 3.7577 0.0014262 379.5465015713486 36.689 0.38697 36.689 36.409 36.796 0 35 18 3 0 0 0 0.25681 1 19385 19385 13.615 4.0709 1 5688100 64339 967 42821 43784 75118 75118 0.05010861583377846 TIYLWEFL 8 Unmodified _TIYLWEFL_ 0 0 0 ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000102034|ENST00000308167|ELF4 ENSG00000120690|ENST00000239882|ELF1;ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7881469726562 2 542.789318 1083.56408 NaN NaN NaN NaN NaN NaN NaN 55.654 1 55.176 54.676 55.676 -0.47798 0 0 0 0.95607 1 30194 30194 9.3474 0 1 64340 2012;3529 42822 43785 75119 75119 0.025644127341365675 TIYVFLFM 8 Unmodified _TIYVFLFM_ 0 0 0 REV__ENSG00000255713|ENST00000545221|OR4D2 REV__ENSG00000255713|ENST00000545221|OR4D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2752075195312 2 517.274989 1032.53543 -0.35323 -0.00018272 0.21808 0.00011281 -0.13516 -6.9913E-05 517.2752485078543 17.105 0.10946 17.105 17.062 17.171 0 41 24 2 0 0 0 0.80143 1 8396 8396 5.7604 0.028577 1 583650 + 64341 24543 42823 43786 75120 75120 0.020459718333540877 TIYVSYVEAKF 11 Unmodified _TIYVSYVEAKF_ 0 0 0 REV__ENST00000467021.1_1_1:166826681-166826759:-|nuORF REV__ENST00000467021.1_1_1:166826681-166826759:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.5677185058594 3 440.567578 1318.6809 0.29398 0.00012952 0.47966 0.00021132 0.77363 0.00034084 440.56782283382114 69.593 0.19176 69.593 69.444 69.636 0 14 8 2 0 0 0 0.71341 1 38740 38740 1.2148 0.4383 1 512290 + 64342 27423 42824 43787 75121 75121 0.03431106163225195 TKALCPHI 8 Unmodified _TKALCPHI_ 0 0 0 REV__ENST00000411702.7_1_17:78355638-78356025:+|nuORF REV__ENST00000411702.7_1_17:78355638-78356025:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7462768554688 2 441.746931 881.479308 0.22075 9.7514E-05 -1.2902 -0.00056993 -1.0694 -0.00047242 441.74629043380304 32.779 0.21609 32.808 32.698 32.914 0.029743 20 9 3 0 0 0 0.46494 1 17228 17228 38.151 13.477 1 5005900 + 64343 26714 42825 43788 75122 75122 0.03382763716535919 TKAYTAMKEL 10 Unmodified _TKAYTAMKEL_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8742370605469 3 385.874125 1154.60055 -0.070557 -2.7226E-05 0.70988 0.00027392 0.63932 0.0002467 385.87424332140074 37.652 0.25933 37.38 37.181 37.44 -0.27133 19 10 2 0 0 0 0.63399 1 19763 19763 8.4443 4.0382 1 1564200 + 64344 23540 42826 43789 75123 75123 0.02942921568546808 TKAYTAMKEL 10 Unmodified _TKAYTAMKEL_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 385.874125 1154.60055 -0.070557 -2.7226E-05 0.70988 0.00027392 0.63932 0.0002467 385.87424332140074 37.652 0.25933 37.38 37.181 37.44 -0.27133 0 0 NaN 8.4443 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1564200 + 64345 23540 42826 43789 0.02942921568546808 TKCPLQFCF 9 Unmodified _TKCPLQFCF_ 0 0 0 REV__nc|ENSG00000162139|Q9UQ49|NEU3 REV__nc|ENSG00000162139|Q9UQ49|NEU3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7598876953125 2 543.759181 1085.50381 -0.59582 -0.00032398 -0.064562 -3.5106E-05 -0.66038 -0.00035909 543.7588715669771 35.307 0.26383 35.085 34.938 35.201 -0.2224 27 11 3 0 0 0 0.45045 1 18464 18464 10.074 0 1 4878200 + 64346 21627 42827 43790 75124 75124 -0.03552344192257806 TKDSLLQTSGL 11 Unmodified _TKDSLLQTSGL_ 0 0 0 REV__nc|ENSG00000107282|Q02410-2|APBA1 REV__nc|ENSG00000107282|Q02410-2|APBA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8197631835938 2 581.819335 1161.62412 0.54247 0.00031562 0.059999 3.4909E-05 0.60247 0.00035053 581.819104874371 46.903 0.34469 41.822 41.645 41.99 -5.0805 89 48 2 0 0 0 0.35681 1 28949 28949 23.79 1.0535 1 51400000 + 64347 18558 42828 43791 75125 75125 0.04977058606709761 TKDVLSSSLEE 11 Unmodified _TKDVLSSSLEE_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3064575195312 2 604.306258 1206.59796 NaN NaN NaN NaN NaN NaN NaN 15.51 1 15.516 15.016 16.016 0.0057774 0 0 0 0.9435 1 7733 7733 0 0 1 64348 1879 42829 43792 75126 75126 0.0029274464461650496 TKEQLEEQL 9 Unmodified _TKEQLEEQL_ 0 0 0 nc|ENSG00000169062|Q9H1J1-2|UPF3A;ENSG00000169062|ENST00000375299|UPF3A;ENST00000493727.5_1_13:115047468-115051873:+|nuORF;ENST00000413731.1_1_17:16649540-16650074:-|nuORF;ENST00000480362.5_1_13:115047204-115067220:+|nuORF nc|ENSG00000169062|Q9H1J1-2|UPF3A nc|ENSG00000169062|Q9H1J1-2|UPF3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3525390625 2 559.290411 1116.56627 NaN NaN NaN NaN NaN NaN NaN 82.629 1 82.132 81.632 82.632 -0.49672 0 0 0 0.83329 1 45233 45233 3.5965 0 1 64349 7829 42830 43793 75127 75127 0.012647966812892264 TKERMKTPL 9 Unmodified _TKERMKTPL_ 0 0 0 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 REV__nc|ENSG00000288520|G9CGD6-3|CNK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.4443664550781 3 368.546231 1102.61686 1.5116 0.00055711 1.2722 0.00046887 2.7839 0.001026 368.879514123864 34.676 0.55217 30.581 30.401 30.954 -4.0951 43 32 2 0 0 0 0.21052 1 20215 20215 2.086 2.086 1 5750400 + 64350 30021 42831 43794 75128 75128 0.06966047525293106 TKEWTSCNY 9 Unmodified _TKEWTSCNY_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.3427124023438 2 566.242406 1130.47026 1.155 0.000654 2.5296 0.0014324 3.6846 0.0020864 566.2436133898387 87.478 0.51518 81.302 81.036 81.551 -6.1757 54 27 3 0 0 0 0.17331 1 57816 57816 22.736 11.912 1 21810000 + 64351 21250 42832 43795 75129 75129 -0.0897567443043954 TKFWEVLSD 9 Unmodified _TKFWEVLSD_ 0 0 0 ENST00000597905.5_1_19:52510547-52511423:-|nuORF;ENST00000376716.9_1_19:52507122-52511423:-|nuORF ENST00000597905.5_1_19:52510547-52511423:-|nuORF ENST00000597905.5_1_19:52510547-52511423:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7442626953125 2 562.784764 1123.55498 -0.083415 -4.6945E-05 0.30016 0.00016892 0.21674 0.00012198 562.7849684267072 34.375 0.38372 34.183 33.843 34.226 -0.19131 24 14 2 0 0 0 0.209 1 17876 17876 7.2892 0 1 1605800 64352 12506 42833 43796 75130 75130 -0.0018598062220007705 TKGKGADVM 9 Unmodified _TKGKGADVM_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7379150390625 2 453.739302 905.464052 0.7521 0.00034126 1.1906 0.00054022 1.9427 0.00088148 453.7376271972168 38.564 0.31113 38.564 38.414 38.725 0 56 15 5 0 0 0 0.12424 1 20598 20598 30.637 3.7529 1 6998000 + 64353 18429 42834 43797 75131 75131 0.007538521286846844 TKHFVSKKF 9 Unmodified _TKHFVSKKF_ 0 0 0 nc|ENSG00000172748|Q8TC21-3|ZNF596;nc|ENSG00000172748|Q8TC21-2|ZNF596;ENSG00000172748|ENST00000398612|ZNF596 nc|ENSG00000172748|Q8TC21-3|ZNF596 nc|ENSG00000172748|Q8TC21-3|ZNF596 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.83544921875 2 561.326934 1120.63931 0.3759 0.000211 1.1684 0.00065586 1.5443 0.00086686 561.3268008887408 44.59 0.41758 44.568 44.281 44.698 -0.022064 55 21 3 0 0 0 0.43463 1 23807 23807 10.824 0.75 1 47632000 64354 8250 42835 43798 75132 75132 0.08382014985227215 TKHSHCLPHL 10 Unmodified _TKHSHCLPHL_ 0 0 0 REV__ENST00000283635.7_2_2:87016528-87018429:-|nuORF REV__ENST00000283635.7_2_2:87016528-87018429:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5390930175781 3 391.537959 1171.59205 0.16063 6.2894E-05 -0.79397 -0.00031087 -0.63334 -0.00024798 391.5376672667642 25.485 0.3231 22.602 22.425 22.748 -2.8831 69 17 5 0 0 0 0.48505 2 13900 13900;14009 14.957 6.2118 1 70992000 + 64355 25207 42836 43799 75133;75134 75133 0.013114124425783302 TKIRQYKIYWF 11 Unmodified _TKIRQYKIYWF_ 0 0 0 REV__ENST00000369367.7_2_12:46322509-46322635:-|nuORF REV__ENST00000369367.7_2_12:46322509-46322635:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 773.4298095703125 2 773.432461 1544.85037 NaN NaN NaN NaN NaN NaN NaN 90.839 1 90.875 90.375 91.375 0.036499 0 0 0 0.94307 1 50529 50529 0.30703 0.30703 1 + 64356 26033 42837 43800 75135 75135 0.09973847236437905 TKISFFKLY 9 Unmodified _TKISFFKLY_ 0 0 0 ENST00000290573.6_1_2:75119227-75119419:+|nuORF ENST00000290573.6_1_2:75119227-75119419:+|nuORF ENST00000290573.6_1_2:75119227-75119419:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.8319702148438 2 573.831517 1145.64848 1.3966 0.00080139 -0.58704 -0.00033686 0.80952 0.00046453 573.8313262353097 97.728 0.34692 91.552 91.384 91.731 -6.1757 41 22 3 0 0 0 0.1685 1 64840 64840 26.268 5.8145 1 45402000 64357 11467 42838 43801 75136 75136 0.08148363550913018 TKKDLKDYF 9 Unmodified _TKKDLKDYF_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5450744628906 3 386.544885 1156.61282 NaN NaN NaN NaN NaN NaN NaN 43.282 1 43.266 42.766 43.766 -0.015667 0 0 0 0.70001 1 23195 23195 6.1918 0 1 64358 5082 42839 43802 75137 75137 0.04078281303213771 TKKFIALY 8 Unmodified _TKKFIALY_ 0 0 0 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6;REV__ENSG00000172803|ENST00000308342|SNX32 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MSMS AL20221201_MKP_PDAC_01 4 492.2998962402344 2 492.299853 982.585153 NaN NaN NaN NaN NaN NaN NaN 49.718 1 44.179 43.679 44.679 -5.5391 0 0 0 0.9706 1 31094 31094 6.3541 1.5981 1 + 64359 19670;22677 42840 43803 75138 75138 0.09316422833649085 TKKKKKKKK 9 Unmodified _TKKKKKKKK_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000243232|ENST00000289269|PCDHAC2 ENSG00000130826|ENST00000369550|DKC1;ENSG00000204962|ENST00000531613|PCDHA8;ENSG00000243232|ENST00000289269|PCDHAC2 ENSG00000130826|ENST00000369550|DKC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.2796630859375 3 382.279926 1143.81795 NaN NaN NaN NaN NaN NaN NaN 91.728 1 91.248 90.748 91.748 -0.48092 0 0 0 0.8622 1 50141 50141 0 0 1 64360 4270;10706;10340 42841 43804 75139 75139 0.2517910462411237 TKKKTSKKMCT 11 Unmodified _TKKKTSKKMCT_ 0 0 0 REV__nc|ENSG00000084093|Q13127-4|REST REV__nc|ENSG00000084093|Q13127-4|REST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.3622436523438 2 642.362333 1282.71011 NaN NaN NaN NaN NaN NaN NaN 84.754 1 84.254 83.754 84.754 -0.49961 0 0 0 0.9435 1 46378 46378 0 0 1 + 64361 17730 42842 43805 75140 75140 0.08006603916214772 TKKLIFII 8 Unmodified _TKKLIFII_ 0 0 0 REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.3312072753906 2 488.333696 974.652839 NaN NaN NaN NaN NaN NaN NaN 106.12 1 99.943 99.443 100.44 -6.1757 0 0 0 0.97444 1 71052 71052 0.79363 0 1 + 64362 22963 42843 43806 75141 75141 0.16449872764451356 TKKLIFII 8 Unmodified _TKKLIFII_ 0 0 0 REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF REV__ENST00000531550.1_1_11:118007744-118012097:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.3320617675781 2 488.333696 974.652839 NaN NaN NaN NaN NaN NaN NaN 107.36 1 101.19 100.69 101.69 -6.1757 0 0 0 0.97444 1 71814 71814 0.79363 0 1 + 64363 22963 42843 43806 75142 75142 0.16449872764451356 TKKLVRRVKRR 11 Unmodified _TKKLVRRVKRR_ 0 0 0 ENST00000514660.1_1_6:11306216-11306354:-|nuORF;ENST00000504634.5_1_6:11272051-11306354:-|nuORF;ENST00000513989.5_1_6:11251942-11306354:-|nuORF;ENST00000504387.5_1_6:11213937-11306354:-|nuORF;ENST00000459670.2_1_6:11305557-11306354:-|nuORF;ENST00000448183.6_1_6:11305366-11306354:-|nuORF ENST00000514660.1_1_6:11306216-11306354:-|nuORF ENST00000514660.1_1_6:11306216-11306354:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.4890747070312 2 720.491511 1438.96847 NaN NaN NaN NaN NaN NaN NaN 104.3 1 104.25 103.75 104.75 -0.048737 0 0 0 0.9435 1 57910 57910 0 0 1 64364 13488 42844 43807 75143 75143 0.26654264335593325 TKKQPQNK 8 Unmodified _TKKQPQNK_ 0 0 0 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 ENSG00000139354|ENST00000547754|GAS2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.28515625 2 486.285266 970.555979 2.4266 0.00118 -1.0118 -0.00049203 1.4148 0.00068799 486.28467484863165 95.997 0.46617 96.001 95.737 96.203 0.0041504 24 16 2 0 0 0 0.80992 1 53391 53391 0.69038 0 1 3137600 64365 5150 42845 43808 75144 75144 0.06952278537369239 TKKREKEL 8 Unmodified _TKKREKEL_ 0 0 0 REV__nc|ENSG00000180336|A2RUB1-1|MEIOC REV__nc|ENSG00000180336|A2RUB1-1|MEIOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.31494140625 2 516.314023 1030.61349 0.36793 0.00018997 -0.40521 -0.00020922 -0.037281 -1.9249E-05 516.3137571367479 90.598 0.3508 90.103 89.891 90.242 -0.49457 38 16 3 0 0 0 0.80975 1 49450 49450 0.79363 0 1 2101800 + 64366 23149 42846 43809 75145 75145 0.09941120742928433 TKKRRRRKRRW 11 Unmodified _TKKRRRRKRRW_ 0 0 0 REV__ENST00000389672.9_1_3:96533549-96533720:+|nuORF REV__ENST00000389672.9_1_3:96533549-96533720:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 814.0252075195312 2 814.021832 1626.02911 NaN NaN NaN NaN NaN NaN NaN 108.48 1 108.43 107.93 108.93 -0.047607 0 0 0 0.9435 1 60074 60074 0 0 1 + 64367 26361 42847 43810 75146 75146 0.24113794438562763 TKKSELQQQFK 11 Unmodified _TKKSELQQQFK_ 0 0 0 REV__ENSG00000116016|ENST00000263734|EPAS1 REV__ENSG00000116016|ENST00000263734|EPAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.5895080566406 3 455.589265 1363.74596 0.71297 0.00032482 0.10567 4.8143E-05 0.81864 0.00037297 455.58923923754514 50.661 0.32344 50.247 50.092 50.415 -0.41351 23 15 2 0 0 0 0.71938 1 27272 27272 2.4348 2.4348 1 2952200 + 64368 19021 42848 43811 75147 75147 0.07864100689084808 TKKTKYVVY 9 Unmodified _TKKTKYVVY_ 0 0 0 REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF REV__ENST00000370620.5_1_X:135749294-135749660:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7565307617188 2 565.334424 1128.6543 0.68153 0.00038529 -0.047185 -2.6675E-05 0.63435 0.00035862 565.3347654756233 83.877 0.22336 83.378 83.195 83.418 -0.49961 11 8 2 0 0 0 0.58466 1 45838 45838 2.3027 0 1 493900 + 64369 26061 42849 43812 75148 75148 0.0951146206255089 TKKTMKTKK 9 Unmodified _TKKTMKTKK_ 0 0 0 REV__ENSG00000117016|ENST00000372684|RIMS3 REV__ENSG00000117016|ENST00000372684|RIMS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.341796875 2 547.341726 1092.6689 NaN NaN NaN NaN NaN NaN NaN 92.469 1 92.469 91.969 92.969 0 0 0 0 0.8622 1 51132 51132 0 0 1 + 64370 19081 42850 43813 75149 75149 0.12627210939058386 TKLAPGIK 8 Unmodified _TKLAPGIK_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.2727355957031 2 414.271096 826.527639 NaN NaN NaN NaN NaN NaN NaN 96.685 1 96.685 96.185 97.185 0 0 0 0 0.97444 1 53431 53431 0.52476 0 1 + 64371 21362 42851 43814 75150 75150 0.10743580628093241 TKLAVTKKRVR 11 Unmodified _TKLAVTKKRVR_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.0851440429688 2 650.432796 1298.85104 NaN NaN NaN NaN NaN NaN NaN 81.561 1 81.561 81.061 82.061 0 0 0 0 0.9435 1 45264 45264 0 0 1 64372 5659 42852 43815 75151 75151 0.21356686676131176 TKLAVTKKRVR 11 Unmodified _TKLAVTKKRVR_ 0 0 0 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 ENSG00000144909|ENST00000296220|OSBPL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.4325561523438 2 650.432796 1298.85104 NaN NaN NaN NaN NaN NaN NaN 82.832 1 82.832 82.332 83.332 0 0 0 0 0.9435 1 45946 45946 0 0 1 64373 5659 42852 43815 75152 75152 0.21356686676131176 TKLHPCLA 8 Unmodified _TKLHPCLA_ 0 0 0 REV__ENSG00000039319|ENST00000505560|ZFYVE16 REV__ENSG00000039319|ENST00000505560|ZFYVE16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2072448730469 2 441.746931 881.479308 0.22075 9.7514E-05 -1.2902 -0.00056993 -1.0694 -0.00047242 441.74629043380304 32.779 0.21609 32.808 32.698 32.914 0.029743 20 9 3 0 0 0 8.7369 1 17174 17174 5.2307 0 1 5005900 + 64374 17186 42853 43816 75153 75153 0.033827637165245505 TKLKPLILR 9 Unmodified _TKLKPLILR_ 0 0 0 ENST00000424774.1_1_1:16482073-16483477:+|nuORF ENST00000424774.1_1_1:16482073-16483477:+|nuORF ENST00000424774.1_1_1:16482073-16483477:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2519226074219 3 361.253376 1080.7383 NaN NaN NaN NaN NaN NaN NaN 103.4 1 103.36 102.86 103.86 -0.047928 0 0 0 0.85447 1 57425 57425 0.96228 0 1 64375 13152 42854 43817 75154 75154 0.20116037950128884 TKLSQDYFVL 10 Unmodified _TKLSQDYFVL_ 0 0 0 ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 ENSG00000182544|ENST00000329548|MFSD5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8688049316406 3 405.22029 1212.63904 1.0449 0.00042342 0.6329 0.00025646 1.6778 0.00067989 405.5550711992774 46.842 0.18563 46.808 46.712 46.898 -0.033417 13 8 2 0 0 0 0.23489 1 25194 25194 6.1918 0.78914 1 1217200 64376 9064 42855 43818 75155 75155 0.04122550474698983 TKMEESYRW 9 Unmodified _TKMEESYRW_ 0 0 0 REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000156103|ENST00000286614|MMP16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5271301269531 3 410.525496 1228.55466 NaN NaN NaN NaN NaN NaN NaN 20.112 1 20.112 19.612 20.612 0 0 0 0 0.85852 1 10103 10103 0.20686 0.047535 1 + 64377 21311 42856 43819 75156 75156 -0.05047723613711241 TKMIANDVH 9 Unmodified _TKMIANDVH_ 0 0 0 nc|ENSG00000100336|Q9BPW4-3|APOL4;ENSG00000100336|ENST00000683024|APOL4;nc|ENSG00000100336|Q9BPW4|APOL4 nc|ENSG00000100336|Q9BPW4-3|APOL4 nc|ENSG00000100336|Q9BPW4-3|APOL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2684936523438 2 514.763309 1027.51206 1.3654 0.00070283 1.2256 0.00063092 2.591 0.0013338 515.2672164403715 41.845 0.53203 37.238 36.985 37.517 -4.6079 56 33 2 0 0 0 0.36964 1 25129 25129 13.906 3.0821 1 27852000 64378 1798 42857 43820 75157 75157 -0.0005907395127451309 TKMTVTTV 8 Oxidation (M) _TKM(Oxidation (M))TVTTV_ TKM(1)TVTTV TKM(44)TVTTV 0 0 1 ENST00000425773.1_1_20:57088957-57089730:-|nuORF ENST00000425773.1_1_20:57088957-57089730:-|nuORF ENST00000425773.1_1_20:57088957-57089730:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.4766235351562 1 896.475745 895.468469 0.60375 0.00054125 2.6859 0.0024078 3.2896 0.0029491 896.4789818935895 57.375 0.66104 51.347 50.891 51.552 -6.0275 49 37 2 0 0 0 0.40602 1 36728 36728 43.858 15.371 1 35533000 64379 13167 42858 43821 75158 75158 1760 0.016553165515801993 TKPASLFSSSL 11 Unmodified _TKPASLFSSSL_ 0 0 0 nc|ENSG00000145348|Q8TEA7-2|TBCK;ENSG00000145348|ENST00000394708|TBCK;ENST00000510927.5_1_4:106967729-107168455:-|nuORF;nc|ENSG00000145348|Q8TEA7-3|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK nc|ENSG00000145348|Q8TEA7-2|TBCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8770141601562 3 379.876523 1136.60774 -0.55789 -0.00021193 2.7843 0.0010577 2.2264 0.00084578 379.87753220377704 26.533 0.33495 26.533 26.323 26.658 0 50 15 5 0 0 0 0.5229 1 13649 13649 8.7518 0 1 18207000 64380 5686 42859 43822 75159 75159 0.04489977440630355 TKPGILKK 8 Unmodified _TKPGILKK_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MSMS AL20221201_MKP_PDAC_01 4 442.8009338378906 2 442.80002 883.585488 NaN NaN NaN NaN NaN NaN NaN 105.17 1 98.99 98.49 99.49 -6.1757 0 0 0 0.97444 1 70446 70446 2.0598 0 1 64381 8437 42860 43823 75160 75160 0.13903842553509094 TKPIFRKKA 9 Unmodified _TKPIFRKKA_ 0 0 0 ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A ENSG00000165502|ENST00000298289|RPL36AL ENSG00000165502|ENST00000298289|RPL36AL MSMS AL20221201_MKP_PDAC_01 4 544.8509521484375 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.1 1 101.93 101.43 102.43 -6.1757 0 0 0 0.84737 1 72264 72264 1.8442 0.19162 1 64382 7349 42861 43824 75161 75161 0.1462629425623163 TKPIFRKKA 9 Unmodified _TKPIFRKKA_ 0 0 0 ENSG00000165502|ENST00000298289|RPL36AL;ENSG00000241343|ENST00000553110|RPL36A ENSG00000165502|ENST00000298289|RPL36AL ENSG00000165502|ENST00000298289|RPL36AL MSMS AL20221201_MKP_PDAC_01 4 544.8517456054688 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.45 1 102.28 101.78 102.78 -6.1757 0 0 0 0.84737 1 72486 72486 1.8442 1.3195 1 64383 7349 42861 43824 75162 75162 0.1462629425623163 TKPKLAPL 8 Unmodified _TKPKLAPL_ 0 0 0 ENST00000495864.5_1_3:45874526-45875807:-|nuORF;ENST00000480156.5_1_3:45874526-45883504:-|nuORF;nc|ENSG00000163818|Q9NQ48-3|LZTFL1;nc|ENSG00000163818|Q9NQ48-2|LZTFL1;ENSG00000163818|ENST00000296135|LZTFL1 ENST00000495864.5_1_3:45874526-45875807:-|nuORF ENST00000495864.5_1_3:45874526-45875807:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2875671386719 2 434.286746 866.558939 1.6897 0.00073383 -0.48211 -0.00020937 1.2076 0.00052445 434.2862752344134 105.28 0.30992 99.101 98.931 99.241 -6.1757 258 77 5 0 0 0 0.80722 1 70413 70413 2.3027 0 1 7342599999.999999 64384 7078 42862 43825 75163 75163 0.12032153662153178 TKPKVKRSK 9 Unmodified _TKPKVKRSK_ 0 0 0 ENSG00000126856|ENST00000449207|PRDM7 ENSG00000126856|ENST00000449207|PRDM7 ENSG00000126856|ENST00000449207|PRDM7 MSMS AL20221201_MKP_PDAC_01 4 536.353515625 2 536.353483 1070.69241 NaN NaN NaN NaN NaN NaN NaN 109.87 1 103.69 103.19 104.19 -6.1757 0 0 0 0.85852 1 73352 73352 0.45834 0 1 64385 3976 42863 43826 75164 75164 0.15989392767869504 TKPLIVQYEVN 11 Unmodified _TKPLIVQYEVN_ 0 0 0 ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX;nc|ENSG00000127022|P27824-3|CANX;ENST00000503126.1_1_5:179133324-179137021:+|nuORF ENSG00000127022|ENST00000247461|CANX ENSG00000127022|ENST00000247461|CANX MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3650512695312 2 652.366453 1302.71835 1.0199 0.00066534 -1.1086 -0.00072321 -0.088711 -5.7872E-05 652.3652225992324 37.971 0.28065 33.603 33.437 33.718 -4.3689 42 16 3 0 0 0 0.5551 1 22305 22305 13.615 1.3742 1 19207000 64386 3984 42864 43827 75165 75165 0.07910197428850552 TKPQRGQPRK 10 Unmodified _TKPQRGQPRK_ 0 0 0 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 REV__nc|ENSG00000179709|Q86W28-2|NLRP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.35595703125 2 598.354545 1194.69454 1.0317 0.00061734 1.2888 0.00077114 2.3205 0.0013885 598.355126825179 105.04 0.12177 98.863 98.789 98.911 -6.1757 21 11 2 0 0 0 0.72044 1 70304 70304 0.35063 0 1 78274000 + 64387 23113 42865 43828 75166 75166 0.1049782150566898 TKPTRIIRKRT 11 Unmodified _TKPTRIIRKRT_ 0 0 0 ENSG00000079134|ENST00000261600|THOC1;ENST00000578529.5_1_18:214628-260326:-|nuORF ENSG00000079134|ENST00000261600|THOC1 ENSG00000079134|ENST00000261600|THOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.44287109375 2 685.441152 1368.86775 1.7522 0.001201 1.196 0.00081981 2.9482 0.0020208 685.4416459549458 105.67 0.50912 99.493 99.324 99.834 -6.1757 151 51 4 0 0 0 0.74096 1 70840 70840 1.1933 0.92432 1 41759000 64388 1263 42866 43829 75167 75167 0.19807187562128092 TKRATLFIVGY 11 Unmodified _TKRATLFIVGY_ 0 0 0 ENST00000502781.5_1_4:147108536-147110857:+|nuORF ENST00000502781.5_1_4:147108536-147110857:+|nuORF ENST00000502781.5_1_4:147108536-147110857:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8720092773438 2 634.871705 1267.72886 0.23326 0.00014809 -0.56445 -0.00035835 -0.33119 -0.00021026 634.8713125592446 48.772 0.43119 48.729 48.573 49.004 -0.04369 67 21 5 0 0 0 0.24216 2 26297 26297;26407 29.841 16.968 1 79457000 64389 14461 42867 43830 75168;75169 75168 0.10570224873913503 TKRATLFIVGY 11 Unmodified _TKRATLFIVGY_ 0 0 0 ENST00000502781.5_1_4:147108536-147110857:+|nuORF ENST00000502781.5_1_4:147108536-147110857:+|nuORF ENST00000502781.5_1_4:147108536-147110857:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.872802734375 2 634.871705 1267.72886 0.99236 0.00063002 -0.14397 -9.1406E-05 0.84838 0.00053861 634.8715858163222 54.362 0.41627 48.497 48.266 48.682 -5.8653 78 25 4 0 0 0 0.24216 2 34372 34372;34506 29.841 14.592 1 83007000 64390 14461 42867 43830 75170;75171 75170 0.10570224873913503 TKREDNDLC 9 Unmodified _TKREDNDLC_ 0 0 0 REV__ENSG00000145241|ENST00000273853|CENPC REV__ENSG00000145241|ENST00000273853|CENPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2504272460938 2 547.250763 1092.48697 0.15316 8.3818E-05 0.19112 0.00010459 0.34428 0.00018841 547.2504943423754 58.275 0.28353 57.784 57.618 57.901 -0.49079 31 13 3 0 0 0 0.095405 1 31656 31656 34.102 1.3168 1 6127400 + 64391 20761 42868 43831 75172 75172 -0.055571735445028025 TKREDNDLC 9 Unmodified _TKREDNDLC_ 0 0 0 REV__ENSG00000145241|ENST00000273853|CENPC REV__ENSG00000145241|ENST00000273853|CENPC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 547.250763 1092.48697 0.82275 0.00045025 -0.14226 -7.785E-05 0.6805 0.0003724 547.2507804354142 57.909 0.29599 57.843 57.694 57.99 -0.066036 0.029512 -0.00010691 NaN 34.102 47 14 5 NaN NaN NaN NaN 0 NaN NaN 0 11626000 + 64392 20761 42868 43831 -0.055571735445028025 TKRFIPIVY 9 Unmodified _TKRFIPIVY_ 0 0 0 REV__ENSG00000156463|ENST00000359120|SH3RF2 REV__ENSG00000156463|ENST00000359120|SH3RF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5666809082031 3 379.565732 1135.67537 0.43096 0.00016358 1.0272 0.00038988 1.4581 0.00055346 379.5661795326855 48.016 0.31494 47.977 47.827 48.142 -0.038643 45 15 4 0 0 0 0.32871 1 25857 25857 15.248 0 1 18714000 + 64393 21331 42869 43832 75173 75173 0.11295472162078113 TKRGRPTA 8 Unmodified _TKRGRPTA_ 0 0 0 REV__nc|ENSG00000141027|O75376-2|NCOR1 REV__nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7647399902344 2 443.764501 885.514448 0.79709 0.00035372 -0.20894 -9.2722E-05 0.58815 0.000261 443.76432498438857 80.794 0.48251 80.302 80.031 80.513 -0.49247 64 20 4 0 0 0 0.81007 1 44144 44144 0.6015 0 1 16478000 + 64394 20513 42870 43833 75174 75174 0.06711142568678952 TKRHLALK 8 Unmodified _TKRHLALK_ 0 0 0 REV__ENSG00000171161|ENST00000306562|ZNF672 REV__ENSG00000171161|ENST00000306562|ZNF672 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.8130798339844 2 483.813993 965.613434 NaN NaN NaN NaN NaN NaN NaN 6.2469 1 6.1623 5.6623 6.6623 -0.08463 0 0 0 0.97444 1 3084 3084 0 0 1 + 64395 22537 42871 43834 75175 75175 0.12925165533579275 TKRKRRKH 8 Unmodified _TKRKRRKH_ 0 0 0 REV__nc|ENSG00000197579|Q9NS56-2|TOPORS REV__nc|ENSG00000197579|Q9NS56-2|TOPORS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.213134765625 3 370.575736 1108.70538 0.4592 0.00017017 -0.89234 -0.00033068 -0.43314 -0.00016051 370.57536764684954 36.814 0.26938 36.814 36.588 36.857 0 17 12 2 0 0 0 8.7369 1 19436 19436 0.35063 0 1 1632500 + 64396 23940 42872 43835 75176 75176 0.15537268670641424 TKRKSPPVL 9 Unmodified _TKRKSPPVL_ 0 0 0 REV__ENSG00000085832|ENST00000371733|EPS15 REV__ENSG00000085832|ENST00000371733|EPS15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.32666015625 2 513.326934 1024.63931 0.27387 0.00014059 0.31494 0.00016167 0.58882 0.00030226 513.3270935073347 34.884 0.26526 34.911 34.774 35.039 0.027401 35 11 4 0 0 0 0.49272 1 18482 18482 7.9102 1.7044 1 13271000 + 64397 17757 42873 43836 75177 75177 0.12798014985219197 TKRLNTYFF 9 Unmodified _TKRLNTYFF_ 0 0 0 REV__ENST00000534336.1_1_11:65268463-65268514:+|nuORF REV__ENST00000534336.1_1_11:65268463-65268514:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.2183532714844 3 397.216991 1188.62914 0.10656 4.2329E-05 0.941 0.00037378 1.0476 0.00041611 397.21748795731963 39.254 0.3027 39.266 39.084 39.387 0.011452 24 13 2 0 0 0 0.46162 1 20864 20864 9.544 5.0151 1 2419300 + 64398 28499 42874 43837 75178 75178 0.042374072599841384 TKRPQTLLQH 10 Unmodified _TKRPQTLLQH_ 0 0 0 REV__ENSG00000131126|ENST00000598265|TEX101 REV__ENSG00000131126|ENST00000598265|TEX101 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3579711914062 2 611.356754 1220.69895 1.1539 0.00070542 -0.049971 -3.055E-05 1.1039 0.00067487 611.3567914011486 82.833 0.78532 82.895 82.421 83.206 0.062004 46 29 2 0 0 0 0.72044 1 45841 45841 1.4819 1.0236 1 2542000 + 64399 19776 42875 43838 75179 75179 0.09743285928607293 TKRRKLLWLSI 11 Unmodified _TKRRKLLWLSI_ 0 0 0 ENST00000295851.9_2_2:204281657-204292010:+|nuORF;ENST00000464761.1_1_2:204281657-204301507:+|nuORF ENST00000295851.9_2_2:204281657-204292010:+|nuORF ENST00000295851.9_2_2:204281657-204292010:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 471.9754028320312 3 471.973273 1412.89799 NaN NaN NaN NaN NaN NaN NaN 16.207 1 13.65 13.15 14.15 -2.557 0 0 0 0.94165 1 8378 8378 1.3296 0 1 64400 11498 42876 43839 75180 75180 0.20805546227325067 TKSIWHNV 8 Unmodified _TKSIWHNV_ 0 0 0 ENST00000541786.5_2_12:118699438-118704503:-|nuORF ENST00000541786.5_2_12:118699438-118704503:-|nuORF ENST00000541786.5_2_12:118699438-118704503:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.7677612304688 2 492.766709 983.518865 NaN NaN NaN NaN NaN NaN NaN 19.886 1 19.894 19.394 20.394 0.0078487 0 0 0 0.97444 1 10128 10128 4.756 0.42677 1 64401 15052 42877 43840 75181 75181 0.026446069916119086 TKSLEEVDKYC 11 Unmodified _TKSLEEVDKYC_ 0 0 0 REV__CON__Q3SZV7 REV__CON__Q3SZV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8804321289062 3 438.879716 1313.61732 0.1369 6.0083E-05 1.1343 0.00049781 1.2712 0.0005579 438.88034065308113 30.564 0.44275 30.594 30.413 30.856 0.030106 73 19 5 0 0 0 0.65846 1 16023 16023 6.6235 0.84002 1 71138000 + + 64402 16877 42878 43841 75182 75182 -0.02694622336161956 TKSQATPSKI 10 Unmodified _TKSQATPSKI_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.2275695800781 3 354.204751 1059.59242 1.9772 0.00070033 3.1453 0.0011141 5.1225 0.0018144 354.54029025862377 36.021 0.082771 31.828 31.77 31.853 -4.1928 6 4 2 0 0 0 0.23489 1 20988 20988 1.3296 0 1 4809200 + 64403 22428 42879 43842 75183 75183 0.0650111064342127 TKSTYLHRF 9 Unmodified _TKSTYLHRF_ 0 0 0 REV__ENSG00000183035|ENST00000329312|CYLC1 REV__ENSG00000183035|ENST00000329312|CYLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8775024414062 3 384.876857 1151.60874 1.2529 0.00048222 -0.009062 -3.4878E-06 1.2439 0.00047873 384.8768985263366 18.816 0.58271 16.195 16.051 16.634 -2.6215 90 40 3 0 0 0 0.51218 1 9988 9988 4.1895 1.9067 1 20358000 + 64404 23313 42880 43843 75184 75184 0.03900236600179596 TKSVSKDTKI 10 Unmodified _TKSVSKDTKI_ 0 0 0 nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6 nc|ENSG00000079156|Q9BZF3-3|OSBPL6 nc|ENSG00000079156|Q9BZF3-3|OSBPL6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.1983947753906 3 369.552039 1105.63429 0.76024 0.00028095 0.97426 0.00036004 1.7345 0.00064098 369.88656752297027 15.286 0.1604 12.759 12.681 12.842 -2.5273 45 29 2 0 0 0 0.23745 1 7871 7871 8.4443 3.1474 1 6284600 64405 16055 42881 43844 75185 75185 0.08569666331936787 TKTAWYWY 8 Unmodified _TKTAWYWY_ 0 0 0 nc|ENSG999|O00370|L1_ORF2;L1PA3_dup1115|chr2:110017555-110020014:+|1.1228314965837385|0.4680770941019235|1.26|175.0|62|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|163|3|sense nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7315063476562 2 559.768917 1117.52328 -0.25428 -0.00014234 -4.2961 -0.0024048 -4.5503 -0.0025471 560.2688820063097 33.812 0.32152 33.812 33.648 33.97 0 28 15 3 0 0 0 8.7369 1 17717 17717 10.183 0.83596 1 1682500 64406 16660 42882 43845 75186 75186 -0.030779285855032867 TKTLCKLFFG 10 Unmodified _TKTLCKLFFG_ 0 0 0 REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF REV__ENST00000513957.1_1_15:56216842-56258681:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 386.8738708496094 3 386.551094 1156.63145 1.2375 0.00047837 -1.1078 -0.00042822 0.12974 5.0152E-05 386.88532248648414 39.471 0.42744 35.021 34.766 35.194 -4.4509 56 25 3 0 0 0 0.23952 1 23290 23290 1.4551 0.75745 1 30561000 + 64407 28185 42883 43846 75187 75187 0.05940119673437039 TKTLQHNLA 9 Unmodified _TKTLQHNLA_ 0 0 0 ENSG00000138459|ENST00000492406|SLC35A5;SLC35A5|p.R178C|1|0.16|ENSG00000138459|chr3:112580649-112580649|C/T|missense_variant ENSG00000138459|ENST00000492406|SLC35A5 ENSG00000138459|ENST00000492406|SLC35A5 MSMS AL20221201_MKP_PDAC_01 4 513.2896118164062 2 513.290548 1024.56654 NaN NaN NaN NaN NaN NaN NaN 42.782 1 38.098 37.598 38.598 -4.6846 0 0 0 0.58748 1 25886 25886 13.042 1.5478 1 64408 5059 42884 43847 75188 75188 0.055242611917947215 TKVLDYVYI 9 Unmodified _TKVLDYVYI_ 0 0 0 REV__ENSG00000204271|ENST00000374919|SPIN3 REV__ENSG00000204271|ENST00000374919|SPIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3137817382812 2 557.313158 1112.61176 NaN NaN NaN NaN NaN NaN NaN 74.484 1 74.008 73.508 74.508 -0.47588 0 0 0 0.70001 1 40766 40766 9.3831 0 1 + 64409 18532 42885 43848 75189 75189 0.05996066934335431 TLAAWVGQR 9 Unmodified _TLAAWVGQR_ 0 0 0 REV__ENSG00000135749|ENST00000258229|PCNX2 REV__ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.2799072265625 2 501.279983 1000.54541 0.14228 7.1323E-05 3.5285 0.0017688 3.6708 0.0018401 501.78378662884506 34.201 0.20551 34.23 34.103 34.308 0.028931 19 9 3 0 0 0 0.51218 1 18010 18010 6.7232 0.96273 1 2796000 + 64410 20095 42886 43849 75190 75190 0.04516295882956456 TLADILLYY 9 Unmodified _TLADILLYY_ 0 0 0 nc|ENSG00000124802|O43324-2|EEF1E1;ENSG00000124802|ENST00000379715|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 nc|ENSG00000124802|O43324-2|EEF1E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.80029296875 2 542.799883 1083.58521 1.1786 0.00063976 -0.72089 -0.0003913 0.45774 0.00024846 542.8001356089625 101.07 0.10672 94.899 94.85 94.956 -6.1757 9 5 2 0 0 0 0.036857 1 67755 67755 67.344 27.394 1 35329000 64411 3821 42887 43850 75191 75191 0.04676378042995566 TLADLVHHV 9 Unmodified _TLADLVHHV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7806091308594 2 502.779816 1003.54508 0.862 0.0004334 -0.30975 -0.00015574 0.55225 0.00027766 502.7796696780448 49.642 0.32477 49.642 49.487 49.812 0 32 14 3 0 0 0 0.012148 1 27308 27308 74.423 45.936 1 14092000 64412 9805 42888 43851 75192 75192 0.04344876163088429 TLADLVHHV 9 Unmodified _TLADLVHHV_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.780029296875 2 502.779816 1003.54508 0.42636 0.00021436 0.67957 0.00034168 1.1059 0.00055604 502.7801076776486 49.98 0.28149 49.588 49.451 49.732 -0.3923 37 13 5 0 0 0 0.042911 1 26884 26884 48.346 26.599 1 8564900 64413 9805 42888 43851 75193 75193 0.04344876163088429 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;nc|ENSG00000129691|Q9UBL3-2|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7828369140625 2 515.782025 1029.5495 0.3264 0.00016835 0.041452 2.138E-05 0.36785 0.00018973 515.7822573540178 69.384 0.28508 69.384 69.226 69.511 0 23 12 3 0 0 0 0.12841 1 38654 38654 30.225 18.585 1 1443600 64414 4159;14720 42889 43852 75194 75194 0.035903405860153725 TLADVLYHV 9 Unmodified _TLADVLYHV_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;nc|ENSG00000129691|Q9UBL3-2|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 515.782025 1029.5495 -0.1454 -7.4996E-05 0.77099 0.00039766 0.62559 0.00032267 515.7822000549901 69.841 0.36014 69.362 69.134 69.494 -0.47903 -0.010871 0.0002288 NaN 30.225 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 4379100 64415 4159;14720 42889 43852 0.035903405860153725 TLADYLHLL 9 Unmodified _TLADYLHLL_ 0 0 0 ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF;ENSG00000127125|ENST00000372561|PPCS ENST00000471420.1_1_1:42922476-42938912:+|nuORF ENST00000471420.1_1_1:42922476-42938912:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7984008789062 2 529.797675 1057.5808 0.33708 0.00017859 1.0169 0.00053874 1.354 0.00071733 529.7983403013773 93.221 0.33214 92.764 92.599 92.931 -0.4574 31 14 3 0 0 0 0.49272 1 50914 50914 7.9102 0 1 1041900 64416 3990 42890 43853 75195 75195 0.054309136201027286 TLADYLHLL 9 Unmodified _TLADYLHLL_ 0 0 0 ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF;ENSG00000127125|ENST00000372561|PPCS ENST00000471420.1_1_1:42922476-42938912:+|nuORF ENST00000471420.1_1_1:42922476-42938912:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7977905273438 2 529.797675 1057.5808 0.23992 0.00012711 -0.20883 -0.00011064 0.031093 1.6473E-05 529.7975943610256 99.829 0.090347 93.654 93.6 93.691 -6.1757 11 6 2 0 0 0 0.12841 1 66629 66629 30.225 3.3412 1 25118000 64417 3990 42890 43853 75196 75196 0.054309136201027286 TLAEIAKAEL 10 Unmodified _TLAEIAKAEL_ 0 0 0 nc|ENSG00000121390|Q8WXF1-2|PSPC1;ENSG00000121390|ENST00000338910|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 nc|ENSG00000121390|Q8WXF1-2|PSPC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.806884765625 2 529.808239 1057.60193 NaN NaN NaN NaN NaN NaN NaN 55.965 1 55.965 55.465 56.465 0 0 0 0 0.073691 1 31111 31111 53.404 11.448 1 64418 3581 42891 43854 75197 75197 0.0754287892893899 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.82421875 2 543.823889 1085.63323 0.1793 9.7507E-05 0.097442 5.2992E-05 0.27674 0.0001505 543.8239233909669 64.275 0.40232 64.275 64.071 64.473 0 41 17 3 0 0 0 0.04428 2 35795 35795;35903 61.09 21.14 1 5741900 64419 5827 42892 43855 75198;75199 75198 0.09383451963026346 TLAEIAKVEL 10 Unmodified _TLAEIAKVEL_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.8246459960938 2 543.823889 1085.63323 0.28096 0.00015279 0.48557 0.00026407 0.76653 0.00041686 543.8240228950668 64.722 0.38779 64.237 64.059 64.447 -0.48512 41 17 3 0 0 0 0.020109 2 35274 35274;35377 75.571 33.615 1 7069800 64420 5827 42892 43855 75200;75201 75200 0.09383451963026346 TLAEINEYL 9 Unmodified _TLAEINEYL_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.277099609375 2 533.276772 1064.53899 0.4956 0.00026429 -0.074869 -3.9926E-05 0.42073 0.00022437 533.2767288549179 72.767 0.3812 72.767 72.585 72.966 0 60 18 4 0 0 0 0.0095811 1 40576 40576 81.613 33.864 1 20613000 64421 7189 42893 43856 75202 75202 0.009303131409069465 TLAEINEYL 9 Unmodified _TLAEINEYL_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.27685546875 2 533.276772 1064.53899 0.63068 0.00033633 -0.43743 -0.00023327 0.19325 0.00010306 533.27652961877 73.278 0.32235 72.802 72.674 72.996 -0.47588 25 14 2 0 0 0 0.05447 1 40098 40098 43.858 13.222 1 3592800 64422 7189 42893 43856 75203 75203 0.009303131409069465 TLAEINEYL 9 Unmodified _TLAEINEYL_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2766723632812 2 533.276772 1064.53899 0.93411 0.00049814 -0.428 -0.00022824 0.50611 0.0002699 533.2759668473933 81.11 0.61158 74.934 74.696 75.308 -6.1757 83 34 3 0 0 0 0.013323 3 53240 53110;53240;53374 71.134 25.385 1 71616000 64423 7189 42893 43856 75204;75205;75206 75205 0.009303131409069465 TLAELHISL 9 Unmodified _TLAELHISL_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7911682128906 2 498.78985 995.565146 -0.101 -5.0376E-05 -0.2206 -0.00011003 -0.32159 -0.00016041 498.7900459103215 71.208 0.25533 71.208 71.09 71.346 0 20 12 2 0 0 0 0.41742 1 39646 39646 11.64 0 1 693330 64424 5275 42894 43857 75207 75207 0.06718627103043673 TLAELHISL 9 Unmodified _TLAELHISL_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7909545898438 2 498.78985 995.565146 0.39799 0.00019851 0.93401 0.00046588 1.332 0.00066439 498.79021040243833 71.634 0.34266 71.158 70.976 71.319 -0.47609 33 13 3 0 0 0 0.12424 1 39172 39172 30.637 7.4881 1 2451600 64425 5275 42894 43857 75208 75208 0.06718627103043673 TLAELHISL 9 Unmodified _TLAELHISL_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.0326843261719 2 498.78985 995.565146 1.0325 0.000515 -1.0821 -0.00053973 -0.04957 -2.4725E-05 498.7901858814733 83.595 1.55 77.419 76.768 78.318 -6.1757 148 83 3 0 0 0 0.0213 1 55212 55212 71.922 7.686 1 15449000 64426 5275 42894 43857 75209 75209 0.06718627103043673 TLAELHISL 9 Unmodified _TLAELHISL_ 0 0 0 nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF nc|ENSG00000140853|Q86WI3-5|NLRC5 nc|ENSG00000140853|Q86WI3-5|NLRC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.78985 995.565146 1.2741 0.00063549 2.0114 0.0010033 3.2855 0.0016388 498.7909180525129 71.034 0.25304 71.07 70.999 71.252 0.035515 -0.075231 0.0010258 NaN 30.637 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 789980 64427 5275 42894 43857 0.06718627103043673 TLAELLVLL 9 Unmodified _TLAELLVLL_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.8211669921875 2 492.820618 983.626684 1.1713 0.00057725 0.061422 3.027E-05 1.2327 0.00060752 492.8207117449531 102.57 0.093002 96.391 96.339 96.432 -6.1757 28 11 3 0 0 0 0.010877 1 68816 68816 77.984 10.64 1 29233000 64428 1440 42895 43858 75210 75210 0.13421558802315303 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2822570800781 2 487.281857 972.549162 0.23309 0.00011358 -0.029239 -1.4248E-05 0.20385 9.9333E-05 487.28181697507796 77.645 0.39642 77.645 77.481 77.878 0 57 25 4 0 0 0 0.010877 2 43230 43130;43230 77.984 41.94 1 9694400 64429 5176 42896 43859 75211;75212 75212 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2821655273438 2 487.281857 972.549162 -0.48633 -0.00023698 1.0021 0.0004883 0.51577 0.00025132 487.28235065571585 78.137 0.3499 77.655 77.517 77.867 -0.4826 48 17 5 0 0 0 0.012148 2 42833 42737;42833 74.423 32.328 1 10710000 64430 5176 42896 43859 75213;75214 75214 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.55615234375 1 973.556438 972.549162 -0.69385 -0.00067551 0.59082 0.0005752 -0.10303 -0.0001003 973.5570527956152 78.132 0.18523 77.649 77.575 77.76 -0.4826 11 7 2 0 0 0 0.070838 1 42809 42809 39.957 11.47 1 773540 64431 5176 42896 43859 75215 75215 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MSMS AL20221201_MKP_PDAC_01 4 487.28271484375 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 86.306 1 80.13 79.63 80.63 -6.1757 0 0 0 0.029091 1 56898 56898 67.344 35.038 1 64432 5176 42896 43859 75216 75216 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MSMS AL20221201_MKP_PDAC_01 4 487.2831115722656 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 86.494 1 80.318 79.818 80.818 -6.1757 0 0 0 0.029091 1 57022 57022 67.344 35.038 1 64433 5176 42896 43859 75217 75217 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MSMS AL20221201_MKP_PDAC_01 4 487.2830810546875 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 86.681 1 80.505 80.005 81.005 -6.1757 0 0 0 0.029091 1 57145 57145 67.344 35.038 1 64434 5176 42896 43859 75218 75218 0.06178920866148019 TLAETLVNL 9 Unmodified _TLAETLVNL_ 0 0 0 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 ENSG00000139645|ENST00000267116|ANKRD52 MSMS AL20221201_MKP_PDAC_01 4 487.2822875976562 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 86.935 1 80.759 80.259 81.259 -6.1757 0 0 0 0.096036 1 57311 57311 44.407 10.305 1 64435 5176 42896 43859 75219 75219 0.06178920866148019 TLAEVSTRL 9 Unmodified _TLAEVSTRL_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2850036621094 2 495.284931 988.55531 0.97372 0.00048227 0.15805 7.8281E-05 1.1318 0.00056055 495.2849472852174 42.739 0.22754 42.739 42.625 42.853 0 20 11 2 0 0 0 0.062454 1 23138 23138 41.956 14.327 1 3326700 64436 5395 42897 43860 75220 75220 0.060574390976512404 TLAEVSTRL 9 Unmodified _TLAEVSTRL_ 0 0 0 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 ENSG00000142178|ENST00000270162|SIK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2863159179688 2 495.284931 988.55531 0.81652 0.00040441 0.53002 0.00026251 1.3465 0.00066692 495.2849680017932 48.285 0.18125 43.052 42.888 43.069 -5.2339 15 10 2 0 0 0 0.047714 1 30053 30053 45.74 9.2337 1 6384100 64437 5395 42897 43860 75221 75221 0.060574390976512404 TLAGDVHIV 9 Unmodified _TLAGDVHIV_ 0 0 0 ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENST00000548539.1_1_12:110929849-110934008:-|nuORF ENSG00000111237|ENST00000549578|VPS29 ENSG00000111237|ENST00000549578|VPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7608032226562 2 462.761092 923.507631 1.0578 0.0004895 -0.71797 -0.00033225 0.3398 0.00015725 462.7608127123805 47.834 0.22863 47.834 47.707 47.936 0 16 10 2 0 0 0 0.2143 1 26193 26193 21.747 5.8995 1 1699500 64438 2770 42898 43861 75222 75222 0.04281784897477792 TLAKIAPL 8 Unmodified _TLAKIAPL_ 0 0 0 REV__nc|ENSG00000144712|O75155-2|CAND2 REV__nc|ENSG00000144712|O75155-2|CAND2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7713928222656 2 413.773471 825.53239 NaN NaN NaN NaN NaN NaN NaN 96.051 1 95.746 95.246 96.246 -0.30472 0 0 0 0.97444 1 52458 52458 0.79363 0 1 + 64439 20728 42899 43862 75223 75223 0.11264464770829363 TLAQRVKEV 9 Unmodified _TLAQRVKEV_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.314208984375 2 522.314023 1042.61349 0.019281 1.0071E-05 -0.14301 -7.4697E-05 -0.12373 -6.4626E-05 522.3137824144608 22.806 0.11767 22.806 22.714 22.832 0 8 5 2 0 0 0 0.35911 1 11602 11602 14.405 4.3315 1 1002200 64440 3109 42900 43863 75224 75224 0.0938912074293512 TLARNCHELE 10 Unmodified _TLARNCHELE_ 0 0 0 nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2861938476562 2 593.287679 1184.56081 -0.44348 -0.00026311 -1.3606 -0.00080722 -1.8041 -0.0010703 593.286560349277 41.55 0.36675 41.55 41.364 41.731 0 57 18 4 0 0 0 0.56348 2 22366 22366;22483 13.042 1.5478 1 46822000 64441 2557 42901 43864 75225;75226 75225 -0.02409205382195978 TLARNCHELE 10 Unmodified _TLARNCHELE_ 0 0 0 nc|ENSG00000108306|Q96IG2-2|FBXL20;ENSG00000108306|ENST00000264658|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 nc|ENSG00000108306|Q96IG2-2|FBXL20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2871704101562 2 593.287679 1184.56081 0.98935 0.00058697 -0.025252 -1.4981E-05 0.96409 0.00057198 593.2875093225247 47.854 0.6758 42.62 42.212 42.888 -5.2339 98 40 3 0 0 0 0.46514 1 29887 29887 18.146 4.2403 1 56994000 64442 2557 42901 43864 75227 75227 -0.02409205382195978 TLATDILMGV 10 Unmodified _TLATDILMGV_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.7633666992188 2 517.283543 1032.55253 0.96198 0.00049762 3.9987 0.0020685 4.9607 0.0025661 517.7876100283565 99.961 0.1437 93.786 93.74 93.884 -6.1757 17 9 3 0 0 0 0.13772 1 66742 66742 42.095 15.211 1 28365000 64443 2658 42902 43865 75228 75228 0.03755847648494637 TLATTPSPGP 10 Unmodified _TLATTPSPGP_ 0 0 0 REV__ENSG00000255587|ENST00000612677|RAB44 REV__ENSG00000255587|ENST00000612677|RAB44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 941.4935913085938 1 941.493838 940.486562 0.64271 0.00060511 -0.83723 -0.00078825 -0.19452 -0.00018314 941.4925978485069 55.564 0.68156 49.643 49.272 49.953 -5.9211 115 41 4 0 0 0 0.31022 1 35421 35421 26.884 1.4843 1 254370000 + 64444 24541 42903 43866 75229 75229 0.013937747979639425 TLAVHLVV 8 Unmodified _TLAVHLVV_ 0 0 0 REV__nc|ENSG00000103150|O95822-2|MLYCD REV__nc|ENSG00000103150|O95822-2|MLYCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2714233398438 2 426.271096 850.527639 0.19801 8.4405E-05 0.38179 0.00016275 0.5798 0.00024715 426.27130099116516 31.381 0.2478 31.381 31.255 31.503 0 21 11 2 0 0 0 0.50586 1 16343 16343 34.187 1.8818 1 2939500 + 64445 18285 42904 43867 75230 75230 0.09639580628083877 TLAWLPDPF 9 Unmodified _TLAWLPDPF_ 0 0 0 nc|ENSG00000166689|Q6IQ23-3|PLEKHA7;ENST00000525781.5_1_11:16810636-16838952:-|nuORF nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 nc|ENSG00000166689|Q6IQ23-3|PLEKHA7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.8062133789062 2 530.279118 1058.54368 1.0878 0.00057681 -0.068405 -3.6274E-05 1.0193 0.00054054 530.278707760504 71.778 0.61665 65.602 65.281 65.898 -6.1757 64 33 2 0 0 0 0.19613 1 47082 47082 12.532 0 1 36384000 64446 14803 42905 43868 75231 75231 0.016752420743159746 TLCDLYETL 9 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))DLYETL_ TLC(1)DLYETL TLC(64)DLYETL 0 1 0 ENSG00000161960|ENST00000293831|EIF4A1;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;nc|ENSG00000161960|P60842-2|EIF4A1;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000587313.1_1_18:12913471-12913552:+|nuORF ENSG00000161960|ENST00000293831|EIF4A1 ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.268798828125 2 564.26809 1126.52163 0.84958 0.00047939 0.51694 0.00029169 1.3665 0.00077108 564.2686934014276 80.692 0.56606 74.516 74.204 74.77 -6.1757 74 30 3 0 0 0 0.019303 1 52873 52873 64.236 11.968 1 88185000 64447 6822 42906 43869 75232 75232 673 -0.03657350456410313 TLCDVILMV 9 Carbamidomethyl (C),Oxidation (M) _TLC(Carbamidomethyl (C))DVILM(Oxidation (M))V_ TLC(1)DVILMV TLCDVILM(1)V TLC(54)DVILMV TLCDVILM(54)V 0 1 1 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-4|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2781982421875 2 540.277403 1078.54025 0.4993 0.00026976 0.16489 8.9089E-05 0.66419 0.00035885 540.2776824965421 82.081 0.47353 81.586 81.369 81.843 -0.4952 44 18 3 0 0 0 0.03327 2 44925 44925;45019 53.576 22.66 1 2043100 64448 3646 42907 43870 75233;75234 75233 362 639 0.004124879138316828 TLCDVILMV 9 Carbamidomethyl (C),Oxidation (M) _TLC(Carbamidomethyl (C))DVILM(Oxidation (M))V_ TLC(1)DVILMV TLCDVILM(1)V TLC(60)DVILMV TLCDVILM(60)V 0 1 1 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-4|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2788696289062 2 540.277403 1078.54025 0.69706 0.0003766 0.11459 6.1908E-05 0.81164 0.00043851 540.2774989043329 90.076 0.57138 83.901 83.631 84.203 -6.1757 49 32 2 0 0 0 0.023164 1 59440 59440 60.39 18.55 1 11156000 64449 3646 42907 43870 75235 75235 362 639 0.004124879138316828 TLCDVILMV 9 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))DVILMV_ TLC(1)DVILMV TLC(60)DVILMV 0 1 0 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-4|KLHL7;nc|ENSG00000122550|Q8IXQ5-3|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MSMS AL20221201_MKP_PDAC_01 4 532.279052734375 2 532.279946 1062.54534 NaN NaN NaN NaN NaN NaN NaN 100.39 1 94.215 93.715 94.715 -6.1757 0 0 0 0.043758 1 67117 67117 60.39 31.903 1 64450 3646 42907 43871 75236 75236 362 0.016567917764405138 TLCDYIYEL 9 Carbamidomethyl (C) _TLC(Carbamidomethyl (C))DYIYEL_ TLC(1)DYIYEL TLC(51)DYIYEL 0 1 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2760620117188 2 595.275915 1188.53728 0.50021 0.00029776 0.23573 0.00014033 0.73594 0.00043809 595.276428414217 91.405 0.75809 85.229 84.823 85.581 -6.1757 95 42 3 0 0 0 0.038285 1 60412 60412 50.855 40.031 1 27994000 64451 2985 42908 43872 75237 75237 309 -0.04945063939362626 TLCGRKAQPL 10 Unmodified _TLCGRKAQPL_ 0 0 0 ENST00000468692.1_1_1:111729830-111729929:-|nuORF ENST00000468692.1_1_1:111729830-111729929:-|nuORF ENST00000468692.1_1_1:111729830-111729929:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8748168945312 3 362.874459 1085.60155 1.4324 0.00051979 -0.7919 -0.00028736 0.64053 0.00023243 362.8743874581894 28.729 0.46246 25.581 25.282 25.744 -3.1482 55 22 4 0 0 0 0.29752 1 15975 15975 23.801 0 1 54991000 64452 13814 42909 43873 75238 75238 0.06217180728117455 TLCGTYSITHH 11 Unmodified _TLCGTYSITHH_ 0 0 0 REV__ENSG00000171505|ENST00000304880|OR1N1 REV__ENSG00000171505|ENST00000304880|OR1N1 MSMS AL20221201_MKP_PDAC_01 4 411.8469543457031 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 17.02 1 14.433 13.933 14.933 -2.5866 0 0 0 0.93933 1 8863 8863 1.2148 0.14337 1 + 64453 22570 42910 43874 75239 75239 -0.04096321239421741 TLCTKGLGPL 10 Unmodified _TLCTKGLGPL_ 0 0 0 REV__ENSG00000140795|ENST00000394809|MYLK3 REV__ENSG00000140795|ENST00000394809|MYLK3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.2778625488281 2 501.786253 1001.55795 0.43102 0.00021628 2.9305 0.0014705 3.3615 0.0016867 501.7873898085759 26.38 0.51931 23.429 23.078 23.597 -2.9511 56 28 3 0 0 0 0.22489 1 14332 14332 18.146 7.3224 1 44224000 + 64454 20493 42911 43875 75240 75240 0.05723571230964808 TLDAIELY 8 Unmodified _TLDAIELY_ 0 0 0 ENSG00000118965|ENST00000281405|WDR35;nc|ENSG00000118965|Q9P2L0|WDR35 ENSG00000118965|ENST00000281405|WDR35 ENSG00000118965|ENST00000281405|WDR35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 937.4869995117188 1 937.48769 936.480414 0.14943 0.00014008 0.18064 0.00016935 0.33006 0.00030943 937.4877414979075 81.601 0.27171 81.601 81.465 81.737 0 23 14 2 0 0 0 0.5953 1 45262 45262 26.341 1.6674 1 534480 64455 3405 42912 43876 75241 75241 0.009632565664219328 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5411071777344 3 365.541252 1093.60193 -0.55889 -0.0002043 0.067155 2.4548E-05 -0.49174 -0.00017975 365.5413138010987 34.853 0.26328 34.853 34.695 34.958 0 39 13 4 0 0 0 0.12424 1 18357 18357 28.495 7.9136 1 13212000 64456 3864 42913 43877 75242 75242 0.058868789289590495 TLDDKKVYL 9 Unmodified _TLDDKKVYL_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;ENST00000466171.1_1_2:118694276-118701638:-|nuORF ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5423278808594 3 365.541252 1093.60193 1.478 0.00054026 -0.1263 -4.6167E-05 1.3517 0.0004941 365.54112558494654 39.09 0.51462 34.639 34.361 34.876 -4.4509 67 32 3 0 0 0 0.14 1 23041 23041 21.59 4.1475 1 44069000 64457 3864 42913 43877 75243 75243 0.058868789289590495 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 930.51416015625 1 930.514239 929.506963 0.3966 0.00036904 0.22385 0.0002083 0.62045 0.00057734 930.5144108213509 81.561 0.412 81.561 81.347 81.759 0 56 20 4 0 0 0 0.010877 2 45287 45195;45287 77.984 10.64 1 5148200 64458 4333 42914 43878 75244;75245 75245 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7608642578125 2 465.760758 929.506963 0.54269 0.00025276 0.092607 4.3133E-05 0.6353 0.0002959 465.76077717654323 81.557 0.41199 81.557 81.37 81.782 0 56 20 4 0 0 0 0.016184 2 45307 45209;45307 67.344 16.489 1 5882500 64459 4333 42914 43878 75246;75247 75247 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5162963867188 1 930.514239 929.506963 0.60226 0.00056041 0.71404 0.00066442 1.3163 0.0012248 930.514886149327 82.135 0.35201 81.639 81.415 81.767 -0.4952 24 13 2 0 0 0 0.023164 1 44918 44918 60.39 9.5345 1 2190900 64460 4333 42914 43878 75248 75248 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7611999511719 2 465.760758 929.506963 0.56785 0.00026448 0.13985 6.5138E-05 0.70771 0.00032962 465.7608424529851 82.093 0.37918 81.598 81.415 81.794 -0.4952 35 14 3 0 0 0 0.023164 2 44930 44930;45038 60.39 15.983 1 2009800 64461 4333 42914 43878 75249;75250 75249 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 930.515380859375 1 930.514239 929.506963 1.1533 0.0010732 -0.3395 -0.00031591 0.81384 0.00075729 930.5137456349522 90.547 0.61307 84.372 84.057 84.67 -6.1757 62 36 2 0 0 0 0.0083087 2 59753 59753;59884 97.075 22.652 1 19625000 64462 4333 42914 43878 75251;75252 75251 0.03938945457775844 TLDDLIAAV 9 Unmodified _TLDDLIAAV_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000462121.1_1_5:139876268-139877642:+|nuORF ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.2821960449219 2 465.760758 929.506963 1.0919 0.00050855 -0.25237 -0.00011755 0.83949 0.000391 465.7604961260221 90.541 0.61307 84.365 84.057 84.67 -6.1757 84 36 3 0 0 0 0.039788 1 59651 59651 48.346 8.3885 1 30684000 64463 4333 42914 43878 75253 75253 0.03938945457775844 TLDEKIEKV 9 Unmodified _TLDEKIEKV_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.872802734375 3 358.87289 1073.59684 -0.69458 -0.00024927 0.72601 0.00026055 0.031431 1.128E-05 358.87320581892175 27.753 0.24768 27.753 27.617 27.865 0 32 11 4 0 0 0 0.036857 1 14282 14282 47.732 16.096 1 13136000 64464 3769 42915 43879 75254 75254 0.06298575066307421 TLDEKIEKV 9 Unmodified _TLDEKIEKV_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.8056640625 2 537.805697 1073.59684 -0.52184 -0.00028065 0.58743 0.00031593 0.065597 3.5278E-05 537.8058638168993 27.753 0.18628 27.753 27.659 27.845 0 18 8 3 0 0 0 0.0091809 1 14298 14298 84.522 14.19 1 6983000 64465 3769 42915 43879 75255 75255 0.06298575066307421 TLDEKIEKV 9 Unmodified _TLDEKIEKV_ 0 0 0 ENSG00000124228|ENST00000618172|DDX27;nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF ENSG00000124228|ENST00000618172|DDX27 ENSG00000124228|ENST00000618172|DDX27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.873291015625 3 358.87289 1073.59684 1.3259 0.00047582 0.44332 0.00015909 1.7692 0.00063491 358.8730575657885 31.391 0.35259 27.695 27.555 27.908 -3.6958 26 18 2 0 0 0 0.013609 2 17716 17716;17835 64.927 16.366 1 87542000 64466 3769 42915 43879 75256;75257 75256 0.06298575066307421 TLDELPAML 9 Oxidation (M) _TLDELPAM(Oxidation (M))L_ TLDELPAM(1)L TLDELPAM(51)L 0 0 1 nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;ENST00000497100.5_1_X:53227940-53240837:-|nuORF nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7599792480469 2 509.759901 1017.50525 0.52519 0.00026772 1.7872 0.00091103 2.3124 0.0011787 509.76036278544643 67.228 0.35071 67.228 67.064 67.414 0 22 14 2 0 0 0 0.038285 1 37468 37468 50.855 30.401 1 592620 64467 3922 42916 43880 75258 75258 702 -0.002804316224910508 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.743408203125 2 456.742899 911.471246 1.0038 0.00045846 -1.2806 -0.0005849 -0.27682 -0.00012643 456.74251532188697 36.506 0.35896 36.506 36.311 36.67 0 32 17 3 0 0 0 0.087258 1 19337 19337 36.044 7.5574 1 9496800 64468 8762;15581 42917 43881 75259 75259 0.01196908000770236 TLDGSLHAV 9 Unmodified _TLDGSLHAV_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7435302734375 2 456.742899 911.471246 1.4051 0.00064176 -0.50066 -0.00022867 0.90442 0.00041309 456.74267273638384 41.892 0.4401 37.285 37.077 37.517 -4.6079 51 27 2 0 0 0 0.095405 2 25143 25143;25287 34.102 12.356 1 41002000 64469 8762;15581 42917 43881 75260;75261 75260 0.01196908000770236 TLDIMTSNL 9 Unmodified _TLDIMTSNL_ 0 0 0 ENST00000369797.7_1_10:105174034-105174085:+|nuORF ENST00000369797.7_1_10:105174034-105174085:+|nuORF ENST00000369797.7_1_10:105174034-105174085:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 503.7760009765625 2 504.257525 1006.5005 1.2548 0.00063273 0.9184 0.00046311 2.1732 0.0010958 504.2583071739985 100.22 0.18318 94.041 93.938 94.122 -6.1757 26 10 3 0 0 0 0.13712 1 66878 66878 16.942 1.0951 1 98908000 64470 12317 42918 43882 75262 75262 -0.002493157652679656 TLDLLTLW 8 Unmodified _TLDLLTLW_ 0 0 0 REV__ENST00000524119.1_1_8:124027545-124027632:-|nuORF REV__ENST00000524119.1_1_8:124027545-124027632:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7838134765625 2 487.781493 973.548434 0.2258 0.00011014 1.1325 0.0005524 1.3583 0.00066255 487.7821942319724 78.004 0.60232 78.004 77.794 78.397 0 51 26 3 0 0 0 0.78849 1 43435 43435 9.3474 0.75416 1 3129300 + 64471 28326 42919 43883 75263 75263 0.06060126217084871 TLDLSRNQL 9 Unmodified _TLDLSRNQL_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MSMS AL20221201_MKP_PDAC_01 4 530.2941284179688 2 530.293288 1058.57202 NaN NaN NaN NaN NaN NaN NaN 102.57 1 96.399 95.899 96.899 -6.1757 0 0 0 0.46757 1 68828 68828 16.942 0 1 64472 6309 42920 43884 75264 75264 0.04507939983614051 TLDPSSRNCSP 11 Unmodified _TLDPSSRNCSP_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.769775390625 2 588.769319 1175.52409 -0.14461 -8.514E-05 0.41493 0.0002443 0.27032 0.00015916 588.7694925891971 51.573 0.23986 51.146 51.033 51.273 -0.42682 30 12 3 0 0 0 0.5229 1 27790 27790 15.248 1.7406 1 8353500 64473 16693 42921 43885 75265 75265 -0.056655019987374544 TLDRLDQE 8 Unmodified _TLDRLDQE_ 0 0 0 ENST00000560357.5_1_8:28821384-28828064:+|nuORF;nc|ENSG00000147421|Q6NT76-4|HMBOX1;nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1 ENST00000560357.5_1_8:28821384-28828064:+|nuORF ENST00000560357.5_1_8:28821384-28828064:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2496032714844 2 495.248546 988.482539 1.2201 0.00060427 0.85276 0.00042233 2.0729 0.0010266 495.24903121866737 59.149 0.6937 53.074 52.798 53.492 -6.0745 124 38 4 0 0 0 0.79887 1 37850 37850 7.2892 0.56607 1 703160000 64474 5848 42922 43886 75266 75266 -0.012163146957618665 TLDSFLIVF 9 Unmodified _TLDSFLIVF_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.794677734375 2 527.794601 1053.57465 0.24744 0.0001306 0.36934 0.00019494 0.61679 0.00032554 527.7946604709336 100.23 0.18212 100.07 99.982 100.16 -0.1575 14 6 4 0 0 0 0.052168 1 54714 54714 44.407 3.9584 1 6926100 + 64475 23807 42923 43887 75267 75267 0.05000395388583456 TLDSFLIVF 9 Unmodified _TLDSFLIVF_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7938232421875 2 527.794601 1053.57465 1.9981 0.0010546 -1.7348 -0.00091561 0.26328 0.00013896 527.7934760500824 100.15 0.13741 100.11 100.05 100.18 -0.036301 10 4 3 0 0 0 0.052168 1 55635 55635 44.407 3.9584 1 8771000 + 64476 23807 42923 43887 75268 75268 0.05000395388583456 TLDSFLIVF 9 Unmodified _TLDSFLIVF_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.794601 1053.57465 0.4206 0.00022199 0.4367 0.00023049 0.85729 0.00045248 527.7944142337899 100.14 0.078789 100.14 100.09 100.17 0 0.034203 0.00033838 NaN 44.407 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 271840 + 64477 23807 42923 43887 0.05000395388583456 TLDSFLIVF 9 Unmodified _TLDSFLIVF_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.794601 1053.57465 0.24744 0.0001306 0.36934 0.00019494 0.61679 0.00032554 527.7946604709336 100.23 0.18212 100.07 99.982 100.16 -0.1575 -0.037088 0.00026729 NaN 44.407 14 6 4 NaN NaN NaN NaN 0 NaN NaN 0 6926100 + 64478 23807 42923 43887 0.05000395388583456 TLDSIKEKG 9 Unmodified _TLDSIKEKG_ 0 0 0 ENSG00000185015|ENST00000321764|CA13 ENSG00000185015|ENST00000321764|CA13 ENSG00000185015|ENST00000321764|CA13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.5384521484375 1 990.546602 989.539325 0.0019962 1.9773E-06 -3.6968 -0.0036619 -3.6948 -0.0036599 990.5434824314573 79.293 0.30353 79.293 79.142 79.446 0 23 12 3 0 0 0 0.2143 1 44110 44110 21.747 4.8044 1 1200200 64479 9319 42924 43888 75269 75269 0.04413732860757591 TLDWAVRGL 9 Unmodified _TLDWAVRGL_ 0 0 0 nc|ENSG00000095752|P20809-2|IL11;ENSG00000095752|ENST00000264563|IL11 nc|ENSG00000095752|P20809-2|IL11 nc|ENSG00000095752|P20809-2|IL11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.8245239257812 2 515.787641 1029.56073 0.67945 0.00035045 1.7563 0.00090588 2.4357 0.0012563 516.289765142882 49.3 0.19991 49.256 49.155 49.355 -0.04369 12 9 2 0 0 0 0.19613 1 26626 26626 7.9102 0.62092 1 977570 64480 1661 42925 43889 75270 75270 0.047131626801501625 TLDWERIPEY 10 Unmodified _TLDWERIPEY_ 0 0 0 ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF ENST00000502926.1_2_5:140806427-140807822:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.3223266601562 2 661.324785 1320.63502 NaN NaN NaN NaN NaN NaN NaN 67.027 1 67.027 66.527 67.527 0 0 0 0 0.96981 1 37382 37382 3.9444 0 1 64481 14464 42926 43890 75271 75271 -0.01247539019004762 TLEDKKLFI 9 Unmodified _TLEDKKLFI_ 0 0 0 REV__ENST00000498873.5_1_4:120419020-120434055:+|nuORF REV__ENST00000498873.5_1_4:120419020-120434055:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8250732421875 2 553.826432 1105.63831 0.86721 0.00048029 0.22293 0.00012346 1.0901 0.00060375 553.8264346965078 92.511 0.98358 86.335 85.823 86.806 -6.1757 177 60 4 0 0 0 0.34134 1 61391 61391 21.747 5.8995 1 476520000 + 64482 27999 42927 43891 75272 75272 0.08971755825655237 TLEDMCRKEH 10 Unmodified _TLEDMCRKEH_ 0 0 0 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 REV__ENSG00000147408|ENST00000692225|CSGALNACT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.286865234375 2 631.286822 1260.55909 0.15562 9.8243E-05 0.13196 8.3304E-05 0.28758 0.00018155 631.2866867339277 94.049 0.27905 94.049 93.883 94.162 0 34 16 3 0 0 0 0.72247 1 51940 51940 0.40072 0 1 507500 + 64483 20888 42928 43892 75273 75273 -0.06076582462446822 TLEEHDVPGF 10 Unmodified _TLEEHDVPGF_ 0 0 0 REV__ENSG00000111276|ENST00000228872|CDKN1B REV__ENSG00000111276|ENST00000228872|CDKN1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.26806640625 2 572.269478 1142.5244 0.92088 0.00052699 -2.4751 -0.0014164 -1.5542 -0.00088942 572.2675995434632 81.32 0.4203 80.828 80.695 81.116 -0.49247 40 20 3 0 0 0 0.67046 1 44585 44585 6.7232 0.99131 1 1498300 + 64484 18745 42929 43893 75274 75274 -0.04115759007231645 TLEELNAFL 9 Unmodified _TLEELNAFL_ 0 0 0 REV__ENSG00000187510|ENST00000344636|PLEKHG7 REV__ENSG00000187510|ENST00000344636|PLEKHG7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2799072265625 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 73.032 1 73.032 72.532 73.532 0 0 0 0 0.82739 1 40659 40659 4.3292 1.44 1 + 64485 23637 42930 43894 75275 75275 0.021746170035157775 TLELRLQPEES 11 Unmodified _TLELRLQPEES_ 0 0 0 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 ENSG00000105877|ENST00000409508|DNAH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.90234375 3 438.901508 1313.6827 NaN NaN NaN NaN NaN NaN NaN 20.8 1 20.81 20.31 21.31 0.010553 0 0 0 0.94165 1 10619 10619 0.45452 0 1 64486 2375 42931 43895 75276 75276 0.03840115181219517 TLERVLPRV 9 Unmodified _TLERVLPRV_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5611877441406 3 361.560869 1081.66078 -0.096452 -3.4873E-05 0.63986 0.00023135 0.54341 0.00019648 361.5610884301947 32.801 0.84599 32.831 32.698 33.544 0.029743 56 37 2 0 0 0 0.55144 1 17486 17486 2.4985 0 1 1925400 64487 8967 42932 43896 75277 75277 0.12321400013956918 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3056030273438 2 578.305864 1154.59717 0.52828 0.00030551 -0.68858 -0.00039821 -0.16031 -9.2705E-05 578.3053678143502 74.476 0.41965 74.476 74.252 74.672 0 51 18 4 0 0 0 0.062454 2 41472 41375;41472 41.956 11.319 1 7727700 64488 10914 42933 43897 75278;75279 75279 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.306396484375 2 578.305864 1154.59717 0.78731 0.00045531 -0.29878 -0.00017279 0.48853 0.00028252 578.3056111232427 74.919 0.53836 74.442 74.18 74.719 -0.47714 77 22 5 0 0 0 0.040683 2 40977 40977;41078 49.554 22.671 1 74644000 64489 10914 42933 43897 75280;75281 75280 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3069458007812 2 578.305864 1154.59717 0.58906 0.00034066 0.95319 0.00055123 1.5422 0.00089189 578.3064922293074 74.355 0.38824 74.398 74.205 74.593 0.043976 49 16 5 0 0 0 0.025842 2 40953 40953;41063 57.722 30.838 1 17373000 64490 10914 42933 43897 75282;75283 75282 0.02605994786199517 TLFDYEVRL 9 Unmodified _TLFDYEVRL_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.306640625 2 578.305864 1154.59717 1.0965 0.00063414 0.12831 7.4203E-05 1.2249 0.00070834 578.3057998081297 88.54 1.2221 82.364 81.8 83.022 -6.1757 226 68 4 0 0 0 0.011671 5 58530 58277;58404;58530;58649;58774 75.761 37.585 1 198020000 64491 10914 42933 43897 75284;75285;75286;75287;75288 75286 0.02605994786199517 TLFEEKIHL 9 Unmodified _TLFEEKIHL_ 0 0 0 ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.213134765625 3 377.213246 1128.61791 -0.79036 -0.00029813 1.7561 0.00066243 0.96576 0.0003643 377.21376821399554 55.496 0.22606 55.496 55.347 55.573 0 21 9 3 0 0 0 0.29507 1 30827 30827 17.443 7.2921 1 1652000 64492 254 42934 43898 75289 75289 0.0587458516586139 TLFEEKIHL 9 Unmodified _TLFEEKIHL_ 0 0 0 ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC ENSG00000001084|ENST00000650454|GCLC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.212646484375 3 377.213246 1128.61791 -0.35216 -0.00013284 -0.12192 -4.5992E-05 -0.47408 -0.00017883 377.2132737037683 55.983 0.19965 55.505 55.401 55.601 -0.47798 19 9 3 0 0 0 0.34134 1 30427 30427 15.248 6.5031 1 4367400 64493 254 42934 43898 75290 75290 0.0587458516586139 TLFENTIEI 9 Unmodified _TLFENTIEI_ 0 0 0 ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENST00000472420.5_1_2:44123526-44126707:-|nuORF ENST00000472420.5_1_2:44123526-44126707:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.784912109375 2 540.284597 1078.55464 0.2384 0.00012881 -0.64855 -0.0003504 -0.41015 -0.0002216 540.2851348091407 78.653 0.36063 78.653 78.469 78.829 0 23 16 2 0 0 0 0.5029 1 43690 43690 7.2892 0 1 409650 64494 13903 42935 43899 75291 75291 0.018505996579506245 TLFFRETIL 9 Unmodified _TLFFRETIL_ 0 0 0 REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8244018554688 2 570.326599 1138.63865 0.61354 0.00034992 -3.9524 -0.0022542 -3.3389 -0.0019043 570.3234707680202 71.001 0.22522 70.524 70.411 70.636 -0.47735 22 9 3 0 0 0 0.095405 1 38861 38861 34.102 7.2188 1 1213900 + 64495 28630 42936 43900 75292 75292 0.07487175545543323 TLFFRETIL 9 Unmodified _TLFFRETIL_ 0 0 0 REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.326599 1138.63865 0.61354 0.00034992 -3.9524 -0.0022542 -3.3389 -0.0019043 570.3234707680202 71.001 0.22522 70.524 70.411 70.636 -0.47735 0.049604 0.0020412 NaN 34.102 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1213900 + 64496 28630 42936 43900 0.07487175545543323 TLFFRETIL 9 Unmodified _TLFFRETIL_ 0 0 0 REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF REV__ENST00000543115.5_1_12:7055773-7060837:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.326599 1138.63865 0.7096 0.0004047 -6.3878 -0.0036431 -5.6782 -0.0032384 570.3229674154644 70.389 0.21397 70.425 70.312 70.526 0.035507 -0.049604 -0.00073671 NaN 34.102 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1308100 + 64497 28630 42936 43900 0.07487175545543323 TLFKVKWIF 9 Unmodified _TLFKVKWIF_ 0 0 0 CON__ENSEMBL:ENSBTAP00000024466 CON__ENSEMBL:ENSBTAP00000024466 CON__ENSEMBL:ENSBTAP00000024466 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.6979370117188 2 591.357702 1180.70085 NaN NaN NaN NaN NaN NaN NaN 86.389 1 85.886 85.386 86.386 -0.50318 0 0 0 0.85737 1 47269 47269 0.6015 0 1 + 64498 146 42937 43901 75293 75293 0.11772946684504859 TLFLTDDSLF 10 Unmodified _TLFLTDDSLF_ 0 0 0 REV__ENST00000557314.5_1_14:20839728-20850189:-|nuORF REV__ENST00000557314.5_1_14:20839728-20850189:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2959594726562 2 586.297704 1170.58086 -0.19471 -0.00011416 1.4204 0.00083276 1.2257 0.0007186 586.2974653043037 69.757 0.31344 69.278 69.134 69.448 -0.47903 19 13 2 0 0 0 0.42068 1 38152 38152 20.454 1.1966 1 2330000 + 64499 19674 42938 43902 75294 75294 0.002388688294331587 TLFNIHWVCRK 11 Unmodified _TLFNIHWVCRK_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant;nc|ENSG00000120733|Q7LBC6-3|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.9242858886719 3 472.923813 1415.74961 -0.19712 -9.3221E-05 2.1483 0.001016 1.9512 0.00092276 472.9243827820491 24.754 0.1939 24.754 24.65 24.844 0 26 9 4 0 0 0 0.6889 1 12645 12645 2.4348 0.18206 1 2452900 64500 3537 42939 43903 75295 75295 0.058364919819268835 TLFPGKVHSL 10 Unmodified _TLFPGKVHSL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8815612792969 3 366.88172 1097.62333 0.39238 0.00014396 -0.48896 -0.00017939 -0.096581 -3.5434E-05 366.8815448497008 43.314 0.35891 43.298 43.124 43.483 -0.015667 29 16 3 0 0 0 0.060508 1 23185 23185 41.347 31.196 1 6392700 64501 8740;14244 42940 43904 75296 75296 0.07842308748331561 TLFPGKVHSL 10 Unmodified _TLFPGKVHSL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8824768066406 3 366.88172 1097.62333 1.6642 0.00061058 -0.3085 -0.00011318 1.3557 0.00049739 366.88164531897394 48.455 0.35048 43.221 43.033 43.384 -5.2339 48 20 3 0 0 0 0.038363 1 30147 30147 48.073 34.458 1 19765000 64502 8740;14244 42940 43904 75297 75297 0.07842308748331561 TLFPGKVHSL 10 Unmodified _TLFPGKVHSL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6;ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8201904296875 2 549.818941 1097.62333 0.97932 0.00053845 0.25222 0.00013867 1.2315 0.00067712 549.8189384267691 48.54 0.33311 43.144 42.907 43.24 -5.3961 25 19 2 0 0 0 0.043225 1 30221 30221 61.602 32.52 1 8456700 64503 8740;14244 42940 43904 75298 75298 0.07842308748331561 TLFPRRIFL 9 Unmodified _TLFPRRIFL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2415161132812 3 388.241359 1161.70225 1.6548 0.00064245 -1.0263 -0.00039844 0.62851 0.00024402 388.24084601376063 98.039 0.14325 91.863 91.781 91.924 -6.1757 12 8 2 0 0 0 0.18144 1 65011 65011 24.991 4.5764 1 11240000 64504 8479 42941 43905 75299 75299 0.12786580773263267 TLFPSLEGDF 10 Unmodified _TLFPSLEGDF_ 0 0 0 nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4|POLR2M nc|ENSG00000255529|Q6EEV4|POLR2M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.277099609375 2 563.276772 1124.53899 0.47619 0.00026823 0.27219 0.00015332 0.74838 0.00042155 563.2767351605253 74.846 0.59357 74.846 74.56 75.154 0 107 31 5 0 0 0 0.62068 1 41639 41639 10.074 0 1 17332000 64505 16588 42942 43906 75300 75300 -0.01829686859082358 TLFSLCLSK 9 Unmodified _TLFSLCLSK_ 0 0 0 REV__ENST00000591312.1_1_19:45219204-45219318:-|nuORF REV__ENST00000591312.1_1_19:45219204-45219318:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.28076171875 2 506.280803 1010.54705 NaN NaN NaN NaN NaN NaN NaN 44.008 1 44.008 43.508 44.508 0 0 0 0 0.33856 1 23931 23931 23.148 2.2772 1 + 64506 29154 42943 43907 75301 75301 0.04220168856681994 TLFSLELFI 9 Unmodified _TLFSLELFI_ 0 0 0 REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.8112182617188 2 541.810251 1081.60595 0.73342 0.00039737 1.8224 0.00098742 2.5559 0.0013848 541.8112036147993 102.14 0.085617 95.965 95.918 96.003 -6.1757 6 3 2 0 0 0 0.1685 1 68571 68571 36.044 5.8194 1 5779100 + 64507 28208 42944 43908 75302 75302 0.06840968422648075 TLFSLELFI 9 Unmodified _TLFSLELFI_ 0 0 0 REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF REV__ENST00000515144.5_1_5:14488550-14489156:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.3317260742188 2 541.810251 1081.60595 0.73342 0.00039737 1.8224 0.00098742 2.5559 0.0013848 541.8112036147993 102.14 0.085617 95.965 95.918 96.003 -6.1757 6 3 2 0 0 0 0.19111 1 68552 68552 16.942 9.0321 1 5779100 + 64508 28208 42944 43908 75303 75303 0.06840968422648075 TLFTKELVL 9 Unmodified _TLFTKELVL_ 0 0 0 ENSG00000197157|ENST00000354725|SND1;ENST00000470723.5_1_7:127589266-127648128:+|nuORF;ENST00000467238.1_1_7:127631037-127637644:+|nuORF ENSG00000197157|ENST00000354725|SND1 ENSG00000197157|ENST00000354725|SND1 MSMS AL20221201_MKP_PDAC_01 4 532.324462890625 2 532.323525 1062.6325 NaN NaN NaN NaN NaN NaN NaN 91.58 1 85.404 84.904 85.904 -6.1757 0 0 0 0.076083 1 60543 60543 49.554 15.153 1 64509 9918 42945 43909 75304 75304 0.10368657313983931 TLFYILTFVAF 11 Unmodified _TLFYILTFVAF_ 0 0 0 REV__ENSG00000176540|ENST00000319813|OR4C5 REV__ENSG00000176540|ENST00000319813|OR4C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.8740844726562 2 667.873382 1333.73221 1.4402 0.0009619 -0.18886 -0.00012613 1.2514 0.00083576 667.8733998547601 81.216 1.1264 81.276 80.705 81.832 0.059929 130 43 4 0 0 0 0.54936 4 44817 44713;44817;44933;45038 13.906 5.1606 1 6404000 + 64510 22935 42946 43910 75305;75306;75307;75308 75306 0.07869474927929332 TLFYILTFVAF 11 Unmodified _TLFYILTFVAF_ 0 0 0 REV__ENSG00000176540|ENST00000319813|OR4C5 REV__ENSG00000176540|ENST00000319813|OR4C5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.87353515625 2 667.873382 1333.73221 0.93832 0.00062668 -0.09164 -6.1204E-05 0.84668 0.00056548 667.8733057752904 97.911 0.38184 91.735 91.587 91.968 -6.1757 54 24 3 0 0 0 0.37677 2 64845 64845;64964 22.736 7.4878 1 29226000 + 64511 22935 42946 43910 75309;75310 75309 0.07869474927929332 TLGALVVLD 9 Unmodified _TLGALVVLD_ 0 0 0 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 901.5404052734375 1 900.54006 899.532783 -0.14442 -0.00013006 -1.7236 -0.0015522 -1.868 -0.0016822 900.5405003821351 75.959 0.50741 75.482 75.235 75.742 -0.47714 45 21 3 0 0 0 0.06187 2 41605 41605;41701 42.095 15.211 1 2566900 64512 3407 42947 43911 75311;75312 75311 0.07899839700041866 TLGATLKL 8 Unmodified _TLGATLKL_ 0 0 0 ENSG00000187609|ENST00000340951|EXD3;ENST00000475006.1_1_9:140262369-140269195:-|nuORF;nc|ENSG00000187609|Q8N9H8-4|EXD3 ENSG00000187609|ENST00000340951|EXD3 ENSG00000187609|ENST00000340951|EXD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7641296386719 2 408.763104 815.511654 0.24058 9.8342E-05 0.55765 0.00022795 0.79824 0.00032629 408.7633899158187 41.408 0.41489 36.8 36.599 37.014 -4.6079 49 27 2 0 0 0 0.15558 1 24790 24790 85.357 7.2073 1 47845000 64513 9572 42948 43912 75313 75313 0.09651874391192905 TLGCPWFIKDQ 11 Unmodified _TLGCPWFIKDQ_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.3250122070312 2 654.326273 1306.63799 0.26546 0.00017369 -1.4837 -0.00097081 -1.2182 -0.00079711 654.325356620437 55.677 0.27068 55.199 55.069 55.34 -0.47798 27 12 3 0 0 0 0.63851 1 30183 30183 9.3831 0 1 2638700 + 64514 17692 42949 43913 75314 75314 -0.0030598716584790964 TLGCPWFIKDQ 11 Unmodified _TLGCPWFIKDQ_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 654.326273 1306.63799 -0.2604 -0.00017039 -0.53396 -0.00034938 -0.79436 -0.00051977 654.3257051528693 55.172 0.23201 55.172 54.986 55.218 0 -0.013692 0.00067646 NaN 9.3831 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1311200 + 64515 17692 42949 43913 -0.0030598716584790964 TLGCPWFIKDQ 11 Unmodified _TLGCPWFIKDQ_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 654.326273 1306.63799 0.26546 0.00017369 -1.4837 -0.00097081 -1.2182 -0.00079711 654.325356620437 55.677 0.27068 55.199 55.069 55.34 -0.47798 0.013692 -0.00056639 NaN 9.3831 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2638700 + 64516 17692 42949 43913 -0.0030598716584790964 TLGEKDIVI 9 Unmodified _TLGEKDIVI_ 0 0 0 nc|ENSG00000174501|Q5JPF3|ANKRD36C;ENSG00000174501|ENST00000295246|ANKRD36C;nc|ENSG00000196912|Q8N2N9-4|ANKRD36B;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ENSG00000135976|ENST00000420699|ANKRD36 nc|ENSG00000174501|Q5JPF3|ANKRD36C nc|ENSG00000174501|Q5JPF3|ANKRD36C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.289306640625 2 494.289682 986.564812 0.67712 0.00033469 -3.2395 -0.0016013 -2.5624 -0.0012666 494.28810630850137 85.23 0.14766 84.729 84.624 84.772 -0.5015 11 7 2 0 0 0 0.39863 1 46621 46621 12.532 0 1 936930 64517 8429 42950 43914 75315 75315 0.07099207383191697 TLGESLLGL 9 Unmodified _TLGESLLGL_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1;nc|ENSG00000136045|Q13610-2|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.5201416015625 1 902.519325 901.512048 0.36407 0.00032858 0.59009 0.00053257 0.95417 0.00086116 902.5198109970747 73.105 0.28766 73.105 72.925 73.213 0 17 12 2 0 0 0 0.30562 1 40645 40645 16.942 0 1 1394900 64518 4780 42951 43915 75316 75316 0.057352493203779886 TLGGVTLTLL 10 Unmodified _TLGGVTLTLL_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.308837890625 2 494.307875 986.601197 0.76006 0.0003757 -0.39635 -0.00019592 0.36371 0.00017978 494.30782040192815 68.179 0.22977 67.697 67.594 67.823 -0.48219 18 10 2 0 0 0 0.44373 1 37286 37286 19.257 1.1106 1 1384300 64519 2693 42952 43916 75317 75317 0.10736084279915303 TLGINVTSI 9 Unmodified _TLGINVTSI_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2686157226562 2 459.26875 916.522947 -0.19871 -9.126E-05 0.6719 0.00030858 0.47319 0.00021732 459.26872704152265 69.533 0.3446 69.054 68.9 69.245 -0.47903 20 14 2 0 0 0 0.32871 1 38057 38057 15.847 0 1 557290 64520 8437 42953 43917 75318 75318 0.06134651694674176 TLGISLSQL 9 Unmodified _TLGISLSQL_ 0 0 0 ENST00000291232.4_2_22:42318247-42318586:-|nuORF ENST00000291232.4_2_22:42318247-42318586:-|nuORF ENST00000291232.4_2_22:42318247-42318586:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2766723632812 2 466.276575 930.538597 0.24741 0.00011536 0.35191 0.00016409 0.59931 0.00027944 466.27678117175003 77.959 0.2872 78.011 77.89 78.177 0.052452 25 11 3 0 0 0 0.012148 1 43037 43037 74.423 3.2892 1 3354200 64521 11470 42954 43918 75319 75319 0.07054938211717854 TLGISLSQL 9 Unmodified _TLGISLSQL_ 0 0 0 ENST00000291232.4_2_22:42318247-42318586:-|nuORF ENST00000291232.4_2_22:42318247-42318586:-|nuORF ENST00000291232.4_2_22:42318247-42318586:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2748718261719 2 466.276575 930.538597 1.0963 0.00051118 -1.6648 -0.00077628 -0.56855 -0.0002651 466.27575816681536 88.418 0.94218 82.242 81.889 82.831 -6.1757 107 52 3 0 0 0 0.070838 1 58344 58344 39.957 0 1 32426000 64522 11470 42954 43918 75320 75320 0.07054938211717854 TLGKHPGPL 9 Unmodified _TLGKHPGPL_ 0 0 0 ENST00000574928.5_1_16:3188909-3189179:+|nuORF ENST00000574928.5_1_16:3188909-3189179:+|nuORF ENST00000574928.5_1_16:3188909-3189179:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 460.2711486816406 2 460.271627 918.528701 NaN NaN NaN NaN NaN NaN NaN 38.567 1 34.198 33.698 34.698 -4.3689 0 0 0 0.098163 1 22772 22772 43.858 3.9086 1 64523 15513 42955 43919 75321 75321 0.06617794996998327 TLGKRTKGL 9 Unmodified _TLGKRTKGL_ 0 0 0 REV__ENST00000492709.5_1_20:30132820-30157019:+|nuORF REV__ENST00000492709.5_1_20:30132820-30157019:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.3112182617188 2 487.311284 972.608014 NaN NaN NaN NaN NaN NaN NaN 63.176 1 62.69 62.19 63.19 -0.48617 0 0 0 0.6032 1 34451 34451 12.532 4.6214 1 + 64524 27909 42956 43920 75322 75322 0.12061441951141205 TLGLLRQI 8 Unmodified _TLGLLRQI_ 0 0 0 ENSG00000119718|ENST00000266126|EIF2B2;ENST00000553539.1_1_14:75469693-75469915:+|nuORF;ENST00000555522.1_1_14:75469672-75471687:+|nuORF ENSG00000119718|ENST00000266126|EIF2B2 ENSG00000119718|ENST00000266126|EIF2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 913.5772094726562 1 913.582928 912.575651 3.732 0.0034095 -2.6939 -0.0024611 1.0381 0.00094842 913.5803739925728 98.018 0.30811 98 97.791 98.099 -0.018188 26 10 4 0 0 0 0.28079 1 54395 54395 57.471 2.6978 1 25925000 64525 3463 42957 43921 75323 75323 0.11586654548136721 TLGLWQHGI 9 Unmodified _TLGLWQHGI_ 0 0 0 ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown ENSG00000188897|ENST00000696174|unknown MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3057250976562 2 512.782359 1023.55016 0.5144 0.00026378 -0.10465 -5.3664E-05 0.40975 0.00021011 512.7809891189971 74.807 0.08551 74.853 74.813 74.899 0.045967 5 3 2 0 0 0 0.13712 1 41252 41252 23.148 0 1 615710 64526 9707 42958 43922 75324 75324 0.03933180025705951 TLGMGCFVF 9 Unmodified _TLGMGCFVF_ 0 0 0 REV__ENSG00000172324|ENST00000302040|OR5A2 REV__ENSG00000172324|ENST00000302040|OR5A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7301635742188 2 487.727349 973.440145 0.47112 0.00022978 2.8691 0.0013993 3.3402 0.0016291 487.7289463168627 40.968 0.20177 40.967 40.851 41.053 -0.0017891 15 9 2 0 0 0 0.39863 1 21862 21862 12.532 0.89125 1 1767900 + 64527 22643 42959 43923 75325 75325 -0.04763704629328913 TLGMGCFVF 9 Unmodified _TLGMGCFVF_ 0 0 0 REV__ENSG00000172324|ENST00000302040|OR5A2 REV__ENSG00000172324|ENST00000302040|OR5A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 487.727349 973.440145 0.17931 8.7453E-05 4.3548 0.002124 4.5341 0.0022114 487.72922420786415 41.287 0.20407 40.984 40.863 41.067 -0.30304 0.008645 0.00089642 NaN 12.532 26 9 3 NaN NaN NaN NaN 0 NaN NaN 0 10853000 + 64528 22643 42959 43923 -0.04763704629328913 TLGMGCFVF 9 Unmodified _TLGMGCFVF_ 0 0 0 REV__ENSG00000172324|ENST00000302040|OR5A2 REV__ENSG00000172324|ENST00000302040|OR5A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 487.727349 973.440145 0.47112 0.00022978 2.8691 0.0013993 3.3402 0.0016291 487.7289463168627 40.968 0.20177 40.967 40.851 41.053 -0.0017891 -0.008645 -0.00055281 NaN 12.532 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1767900 + 64529 22643 42959 43923 -0.04763704629328913 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF REV__ENSG00000170927|ENST00000371117|PKHD1;ENSG00000090989|ENST00000381295|EXOC1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 915.5510864257812 1 915.550959 914.543683 0.16788 0.0001537 -0.48895 -0.00044766 -0.32107 -0.00029396 915.5503864880542 71.234 0.3369 70.757 70.589 70.926 -0.47735 25 14 2 0 0 0 0.009483 2 38939 38939;39039 81.89 20.987 1 3833700 64530 22523;1574 42960 43924 75326;75327 75326 0.08299242074349422 TLGNVLVTV 9 Unmodified _TLGNVLVTV_ 0 0 0 ENSG00000090989|ENST00000381295|EXOC1;nc|ENSG00000090989|Q9NV70-2|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF REV__ENSG00000170927|ENST00000371117|PKHD1;ENSG00000090989|ENST00000381295|EXOC1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2790222167969 2 458.279118 914.543683 0.36002 0.00016499 0.20447 9.3706E-05 0.5645 0.0002587 458.2791777080423 71.255 0.35742 70.778 70.568 70.926 -0.47735 26 15 2 0 0 0 0.03568 1 38969 38969 52.268 5.3475 1 1722600 64531 22523;1574 42960 43924 75328 75328 0.08299242074349422 TLGRPLLL 8 Unmodified _TLGRPLLL_ 0 0 0 ENST00000394524.7_1_4:114375561-114375618:-|nuORF ENST00000394524.7_1_4:114375561-114375618:-|nuORF ENST00000394524.7_1_4:114375561-114375618:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.7919616699219 2 441.792195 881.569838 NaN NaN NaN NaN NaN NaN NaN 65.876 1 59.7 59.2 60.2 -6.1757 0 0 0 0.62748 1 42798 42798 32.305 5.4218 1 64532 12744 42961 43925 75329 75329 0.12431556036472102 TLGTLQPPD 9 Unmodified _TLGTLQPPD_ 0 0 0 ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.49267578125 1 941.493838 940.486562 -0.49998 -0.00047073 -0.7771 -0.00073163 -1.2771 -0.0012024 941.4929112897024 48.866 0.44446 48.866 48.618 49.062 0 73 21 5 0 0 0 0.2001 1 26828 26828 23.148 0 1 70573000 64533 10999 42962 43926 75330 75330 0.013937747979525739 TLGTLQPPD 9 Unmodified _TLGTLQPPD_ 0 0 0 ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 941.4906616210938 1 941.493838 940.486562 0.64271 0.00060511 -0.83723 -0.00078825 -0.19452 -0.00018314 941.4925978485069 55.564 0.68156 49.643 49.272 49.953 -5.9211 115 41 4 0 0 0 0.2001 3 35147 35147;35291;35543 23.148 0 1 254370000 64534 10999 42962 43926 75331;75332;75333 75331 0.013937747979525739 TLGTLQPPD 9 Unmodified _TLGTLQPPD_ 0 0 0 ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF ENST00000215906.5_1_22:26839610-26839709:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 941.493896484375 1 941.493838 940.486562 0.76333 0.00071867 -0.92206 -0.00086811 -0.15873 -0.00014944 941.4927365918513 58.407 0.54773 52.333 52.05 52.598 -6.0745 61 29 3 0 0 0 0.087258 3 37442 37406;37442;37566 36.044 16.787 1 38714000 64535 10999 42962 43926 75334;75335;75336 75335 0.013937747979525739 TLGVGPLG 8 Unmodified _TLGVGPLG_ 0 0 0 REV__ENSG00000226979|ENST00000418386|LTA REV__ENSG00000226979|ENST00000418386|LTA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7305908203125 2 357.213246 712.41194 0.20805 7.4319E-05 4.2516 0.0015187 4.4596 0.001593 357.2143544794098 39.569 0.22617 39.58 39.469 39.695 0.011452 15 10 2 0 0 0 8.7369 1 21106 21106 0.79363 0 1 899260 + 64536 24395 42963 43927 75337 75337 0.04423056777250167 TLGWSAHMAI 10 Unmodified _TLGWSAHMAI_ 0 0 0 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 ENSG00000135913|ENST00000258399|USP37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8512573242188 3 362.851543 1085.5328 0.39806 0.00014444 -0.22414 -8.1328E-05 0.17392 6.3109E-05 362.85130763204916 92.504 0.44673 92.023 91.813 92.26 -0.48092 53 20 3 0 0 0 0.50944 1 50559 50559 13.615 0 1 4836600 64537 4755 42964 43928 75338 75338 -0.006544835716113084 TLHAAALV 8 Unmodified _TLHAAALV_ 0 0 0 REV__ENSG00000197168|ENST00000684899|NEK5 REV__ENSG00000197168|ENST00000684899|NEK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2396545410156 2 398.239796 794.465038 -0.53038 -0.00021122 -0.57753 -0.00022999 -1.1079 -0.00044121 398.2395980102503 41.472 0.21289 41.472 41.325 41.538 0 14 10 2 0 0 0 0.67481 1 22343 22343 19.439 0 1 4388700 + 64538 23903 42965 43929 75339 75339 0.05958434559897796 TLHFQKLY 8 Unmodified _TLHFQKLY_ 0 0 0 REV__ENST00000587014.1_1_17:43180336-43181457:+|nuORF REV__ENST00000587014.1_1_17:43180336-43181457:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 525.2908935546875 2 525.292559 1048.57057 NaN NaN NaN NaN NaN NaN NaN 28.236 1 25.087 24.587 25.587 -3.1482 0 0 0 0.63034 1 15731 15731 32.117 3.0354 1 + 64539 20161 42966 43930 75340 75340 0.04822350685526544 TLHGPGGP 8 Unmodified _TLHGPGGP_ 0 0 0 ENST00000319555.7_1_16:88601887-88602595:+|nuORF ENST00000319555.7_1_16:88601887-88602595:+|nuORF ENST00000319555.7_1_16:88601887-88602595:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.1927795410156 2 368.192845 734.371138 -0.23774 -8.7536E-05 0.50654 0.0001865 0.26879 9.8967E-05 368.19302824464063 21.662 0.27 21.685 21.515 21.785 0.022896 25 15 2 0 0 0 0.80624 2 10943 10943;11039 2.8892 0 1 1321200 64540 11760 42967 43931 75341;75342 75341 -0.006672845423736362 TLHHWQQL 8 Unmodified _TLHHWQQL_ 0 0 0 nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000182606|ENST00000327628|TRAK1 nc|ENSG00000182606|Q9UPV9-2|TRAK1 nc|ENSG00000182606|Q9UPV9-2|TRAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.778076171875 2 531.777608 1061.54066 0.33881 0.00018017 -1.7933 -0.00095361 -1.4545 -0.00077344 531.7769114794236 83.383 0.25572 83.383 83.237 83.493 0 23 12 2 0 0 0 0.80143 1 46232 46232 5.7604 0 1 451200 64541 9071 42968 43932 75343 75343 0.012354117401628173 TLHKGCFY 8 Unmodified _TLHKGCFY_ 0 0 0 nc|ENSG00000079435|Q05469-2|LIPE;ENSG00000079435|ENST00000244289|LIPE nc|ENSG00000079435|Q05469-2|LIPE nc|ENSG00000079435|Q05469-2|LIPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7359619140625 2 484.736563 967.458573 0.26849 0.00013015 -1.5045 -0.0007293 -1.236 -0.00059916 484.7359784411904 81.573 0.29873 81.573 81.416 81.715 0 29 15 2 0 0 0 0.80143 1 45251 45251 5.7604 0 1 604140 64542 1278 42969 43933 75344 75344 -0.02645826663126627 TLHPQTNS 8 Unmodified _TLHPQTNS_ 0 0 0 ENST00000483180.5_2_3:101572083-101572335:+|nuORF ENST00000483180.5_2_3:101572083-101572335:+|nuORF ENST00000483180.5_2_3:101572083-101572335:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2242126464844 2 449.224874 896.435195 NaN NaN NaN NaN NaN NaN NaN 31.417 1 31.315 30.815 31.815 -0.10269 0 0 0 0.97444 1 16332 16332 2.3027 0 1 64543 14125 42970 43934 75345 75345 -0.017165491760920304 TLIAAILYL 9 Unmodified _TLIAAILYL_ 0 0 0 ENSG00000102007|ENST00000376327|PLP2;nc|ENSG00000102007|Q04941-2|PLP2 ENSG00000102007|ENST00000376327|PLP2 ENSG00000102007|ENST00000376327|PLP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.626220703125 1 990.623396 989.616119 0.79443 0.00078698 1.4106 0.0013974 2.205 0.0021844 990.6243448124325 102.13 0.080139 95.95 95.898 95.978 -6.1757 5 3 2 0 0 0 0.010877 1 68554 68554 77.984 7.2688 1 7719100 64544 2009 42971 43935 75346 75346 0.12089576147877779 TLIDLPGITKV 11 Unmodified _TLIDLPGITKV_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3 nc|ENSG00000079805|P50570-3|DNM2 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3610229492188 2 585.360639 1168.70673 0.43709 0.00025586 0.5565 0.00032575 0.99359 0.00058161 585.3611644589536 77.423 0.30779 77.473 77.321 77.629 0.05011 20 12 2 0 0 0 0.02135 1 42744 42744 57.108 27.267 1 2369400 64545 1285 42972 43936 75347 75347 0.12912000405481194 TLIDLPGITRV 11 Unmodified _TLIDLPGITRV_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3644409179688 2 599.363713 1196.71287 0.17834 0.00010689 0.29802 0.00017862 0.47636 0.00028552 599.3637521648751 78.823 0.29615 78.337 78.165 78.461 -0.48596 31 11 3 0 0 0 0.22582 1 43151 43151 30.703 0 1 2394000 64546 6530 42973 43937 75348 75348 0.1223851863701384 TLIDLPGITRV 11 Unmodified _TLIDLPGITRV_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3631591796875 2 599.363713 1196.71287 0.17424 0.00010443 0.13995 8.3882E-05 0.31419 0.00018831 599.3637775197489 78.24 0.44962 78.292 78.063 78.512 0.052452 54 18 4 0 0 0 2.1826E-06 2 43151 43151;43256 101.54 0 1 33806000 64547 6530 42973 43937 75349;75350 75349 0.1223851863701384 TLIDLPGITRV 11 Unmodified _TLIDLPGITRV_ 0 0 0 ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1 ENSG00000157601|ENST00000398598|MX1 ENSG00000157601|ENST00000398598|MX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3649291992188 2 599.363713 1196.71287 0.47582 0.00028519 0.24675 0.00014789 0.72257 0.00043308 599.3638620272818 93.957 0.54256 87.781 87.521 88.064 -6.1757 98 31 4 0 0 0 0.0062377 3 62105 62105;62234;62368 73.196 0 1 154090000 64548 6530 42973 43937 75351;75352;75353 75351 0.1223851863701384 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.5620727539062 1 972.561189 971.553913 0.15411 0.00014989 0.080556 7.8346E-05 0.23467 0.00022823 972.5610751805688 99.792 0.16038 99.792 99.702 99.863 0 13 5 3 0 0 0 0.0036753 1 55087 55087 123.1 26.022 1 15404000 64549 1899 42974 43938 75354 75354 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7847290039062 2 486.784233 971.553913 0.24341 0.00011849 0.21562 0.00010496 0.45903 0.00022345 486.784313401528 99.792 0.21506 99.792 99.702 99.917 0 20 7 4 0 0 0 0.0094915 1 55088 55088 81.864 28.288 1 24321000 64550 1899 42974 43938 75355 75355 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.5602416992188 1 972.561189 971.553913 0.23768 0.00023116 -1.5662 -0.0015232 -1.3285 -0.0012921 972.5596205193013 99.9 0.14649 99.743 99.669 99.815 -0.15751 13 4 4 0 0 0 0.0077963 1 54537 54537 109.63 31.645 1 31026000 64551 1899 42974 43938 75356 75356 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7839660644531 2 486.784233 971.553913 0.46977 0.00022868 -1.3853 -0.00067436 -0.91557 -0.00044568 486.78348563383884 99.901 0.31858 99.743 99.583 99.901 -0.1575 26 10 5 0 0 0 0.013472 1 54538 54538 70.716 19.86 1 86770000 64552 1899 42974 43938 75357 75357 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5610961914062 1 972.561189 971.553913 0.78824 0.00076661 -0.40421 -0.00039311 0.38403 0.00037349 972.5605666764291 101.23 0.17029 95.054 94.974 95.144 -6.1757 31 10 4 0 0 0 0.0077963 1 67859 67859 109.63 24.273 1 720980000 64553 1899 42974 43938 75358 75358 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.784423828125 2 486.784233 971.553913 1.0964 0.00053373 -0.44081 -0.00021458 0.65562 0.00031914 486.78389049949647 101.23 0.22129 95.054 94.956 95.178 -6.1757 44 13 5 0 0 0 0.013472 1 67862 67862 70.716 13.244 1 1878399999.9999998 64554 1899 42974 43938 75359 75359 0.06699805008918247 TLIEDILGV 9 Unmodified _TLIEDILGV_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 972.561189 971.553913 0.15349 0.00014928 0.12801 0.00012449 0.2815 0.00027378 972.5611199443686 94.736 0.2439 94.736 94.609 94.853 0 -0.15899 0.00043552 NaN 109.63 33 23 2 NaN NaN NaN NaN 0 NaN NaN 0 528130 64555 1899 42974 43938 0.06699805008918247 TLIFHIESW 9 Unmodified _TLIFHIESW_ 0 0 0 REV__ENSG00000239388|ENST00000487349|ASB14 REV__ENSG00000239388|ENST00000487349|ASB14 MSMS AL20221201_MKP_PDAC_01 4 573.30322265625 2 573.303124 1144.5917 NaN NaN NaN NaN NaN NaN NaN 72.913 1 66.737 66.237 67.237 -6.1757 0 0 0 0.41346 1 47693 47693 19.257 3.4098 1 + 64556 24438 42975 43939 75360 75360 0.025183159943708233 TLIGSIVKI 9 Unmodified _TLIGSIVKI_ 0 0 0 REV__ENSG00000102104|ENST00000379984|RS1 REV__ENSG00000102104|ENST00000379984|RS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.3132934570312 2 472.312961 942.611368 1.0437 0.00049294 -0.28058 -0.00013252 0.76309 0.00036042 472.3127149836429 87.659 0.72494 81.483 81.075 81.8 -6.1757 58 39 2 0 0 0 0.078314 1 57725 57725 38.176 0 1 14977000 + 64557 18221 42976 43940 75361 75361 0.13776692005137647 TLILLDAALL 10 Unmodified _TLILLDAALL_ 0 0 0 REV__ENSG00000198727|ENST00000361789|MT-CYB REV__ENSG00000198727|ENST00000361789|MT-CYB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8965148925781 3 352.561876 1054.6638 -0.27085 -9.5491E-05 1.9133 0.00067457 1.6425 0.00057908 352.56265543326265 30.985 0.22723 31.015 30.882 31.109 0.030106 14 9 2 0 0 0 0.69126 1 16196 16196 3.8763 0.28927 1 669250 + 64558 24046 42977 43941 75362 75362 0.13865230348096702 TLILLDAALL 10 Unmodified _TLILLDAALL_ 0 0 0 REV__ENSG00000198727|ENST00000361789|MT-CYB REV__ENSG00000198727|ENST00000361789|MT-CYB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 352.561876 1054.6638 -0.27085 -9.5491E-05 1.9133 0.00067457 1.6425 0.00057908 352.56265543326265 30.985 0.22723 31.015 30.882 31.109 0.030106 0 0 NaN 3.8763 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 669250 + 64559 24046 42977 43941 0.13865230348096702 TLILMFAW 8 Unmodified _TLILMFAW_ 0 0 0 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 ENSG00000146477|ENST00000275300|SLC22A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7749633789062 2 497.775157 993.53576 NaN NaN NaN NaN NaN NaN NaN 99.833 1 99.833 99.333 100.33 0 0 0 0 0.9249 1 55108 55108 15.768 0 1 64560 5784 42978 43942 75363 75363 0.038733915532020546 TLIPIALFS 9 Unmodified _TLIPIALFS_ 0 0 0 REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.5963134765625 1 974.592096 973.584819 2.7426 0.0026729 1.3026 0.0012696 4.0452 0.0039425 974.592896518437 99.975 0.10838 99.939 99.88 99.989 -0.036301 5 3 2 0 0 0 0.042911 1 55541 55541 48.346 3.9388 1 1449800 + 64561 29651 42979 43943 75364 75364 0.09697003113797109 TLIPIALFS 9 Unmodified _TLIPIALFS_ 0 0 0 REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E REV__nc|ENSG00000137054|Q9GZS1-1|POLR1E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 974.592096 973.584819 2.7426 0.0026729 1.3026 0.0012696 4.0452 0.0039425 974.592896518437 99.975 0.10838 99.939 99.88 99.989 -0.036301 0 0 NaN 48.346 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1449800 + 64562 29651 42979 43943 0.09697003113797109 TLIRKRRRQKL 11 Unmodified _TLIRKRRRQKL_ 0 0 0 REV__nc|ENSG00000151577|P35462-3|DRD3 REV__nc|ENSG00000151577|P35462-3|DRD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 734.4896240234375 2 734.488968 1466.96338 NaN NaN NaN NaN NaN NaN NaN 104.38 1 104.33 103.83 104.83 -0.048737 0 0 0 0.9435 1 57951 57951 0 0 1 + 64563 21076 42980 43944 75365 75365 0.24857960473013918 TLISEEDTGL 10 Unmodified _TLISEEDTGL_ 0 0 0 REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF REV__ENST00000513428.5_1_4:122602814-122617744:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.27001953125 2 539.269144 1076.52373 -0.47501 -0.00025616 2.1505 0.0011597 1.6755 0.00090353 539.2702774098235 35.086 0.19638 34.864 34.762 34.958 -0.2224 14 8 2 0 0 0 0.44373 1 18368 18368 19.257 2.1441 1 1420900 + 64564 21870 42981 43945 75366 75366 -0.011465984469396062 TLISRLPAV 9 Unmodified _TLISRLPAV_ 0 0 0 ENSG00000180198|ENST00000683442|RCC1;nc|ENSG00000180198|P18754-2|RCC1 ENSG00000180198|ENST00000683442|RCC1 ENSG00000180198|ENST00000683442|RCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3086242675781 2 485.30821 968.601866 0.67606 0.0003281 0.20531 9.9639E-05 0.88137 0.00042774 485.3082107016868 58.828 0.35406 58.768 58.568 58.922 -0.060719 46 17 3 0 0 0 0.069655 1 31998 31998 40.239 5.3071 1 5002200 64565 8888 42982 43946 75367 75367 0.11630923719621933 TLISTAHTL 9 Unmodified _TLISTAHTL_ 0 0 0 nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 nc|ENSG00000133106|Q96J88-3|EPSTI1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7263793945312 2 478.7742 955.533846 0.99403 0.00047592 -1.053 -0.00050416 -0.058983 -2.824E-05 478.7737781877884 42.666 0.11427 42.666 42.586 42.7 0 7 5 2 0 0 0 0.12183 1 23114 23114 34.102 10.954 1 1309900 64566 16196 42983 43947 75368 75368 0.05430054068960999 TLITTYRL 8 Unmodified _TLITTYRL_ 0 0 0 REV__ENSG00000280021|ENST00000624103|OR51F1;REV__ENSG00000176925|ENST00000322110|OR51F2 REV__ENSG00000280021|ENST00000624103|OR51F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7926330566406 2 490.792392 979.570232 0.41532 0.00020383 0.053685 2.6348E-05 0.469 0.00023018 490.7921639240652 66.786 0.20598 66.303 66.171 66.377 -0.48323 13 9 2 0 0 0 0.78849 1 36511 36511 9.3474 0 1 592570 + 64567 24679;22950 42984 43948 75369 75369 0.07962930965663872 TLIYKYYK 8 Unmodified _TLIYKYYK_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000111642|ENST00000544040|CHD4 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3081665039062 2 546.310418 1090.60628 0.25378 0.00013864 -2.9635 -0.001619 -2.7097 -0.0014803 546.3083644603255 81.908 0.20267 81.908 81.82 82.022 0 13 12 2 0 0 0 0.79669 1 45474 45474 8.5933 0 1 458240 + 64568 29773;18759 42985 43949 75370 75370 0.06460388142522788 TLKHRGLR 8 Unmodified _TLKHRGLR_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MSMS AL20221201_MKP_PDAC_01 4 490.8113098144531 2 490.809242 979.603932 NaN NaN NaN NaN NaN NaN NaN 106.98 1 100.8 100.3 101.3 -6.1757 0 0 0 0.97444 1 71581 71581 0.79363 0 1 + 64569 23629 42986 43950 75371 75371 0.1133139724809098 TLKKGLLKKL 10 Unmodified _TLKKGLLKKL_ 0 0 0 REV__ENSG00000137860|ENST00000347644|SLC28A2 REV__ENSG00000137860|ENST00000347644|SLC28A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.4065551757812 2 571.405184 1140.79581 NaN NaN NaN NaN NaN NaN NaN 104.78 1 104.73 104.23 105.23 -0.048737 0 0 0 1.0061 1 58175 58175 0 0 1 + 64570 20277 42987 43951 75372 75372 0.23104880155710816 TLKKKKNKFAK 11 Unmodified _TLKKKKNKFAK_ 0 0 0 ENST00000263228.3_1_9:33917599-33917731:+|nuORF ENST00000263228.3_1_9:33917599-33917731:+|nuORF ENST00000263228.3_1_9:33917599-33917731:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 667.43798828125 2 667.437547 1332.86054 NaN NaN NaN NaN NaN NaN NaN 103.95 1 97.776 97.276 98.276 -6.1757 0 0 0 0.94307 1 69652 69652 0.30703 0 1 64571 11282 42988 43952 75373 75373 0.20742454961691692 TLKLTFLKY 9 Unmodified _TLKLTFLKY_ 0 0 0 REV__ENSG00000134186|ENST00000370025|PRPF38B REV__ENSG00000134186|ENST00000370025|PRPF38B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.773681640625 2 563.847167 1125.67978 1.4338 0.00080842 0.731 0.00041217 2.1648 0.0012206 563.847036848142 94.251 0.33544 88.076 87.898 88.233 -6.1757 51 19 4 0 0 0 0.17729 1 62495 62495 11.495 0 1 38221000 + 64572 19956 42989 43953 75374 75374 0.12196936584973628 TLKNYVLPQ 9 Unmodified _TLKNYVLPQ_ 0 0 0 REV__nc|ENSG00000065361|P21860-3|ERBB3 REV__nc|ENSG00000065361|P21860-3|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2116394042969 3 359.209725 1074.60735 0.84125 0.00030219 2.8857 0.0010366 3.7269 0.0013387 359.54453121269944 16.072 0.037056 13.516 13.501 13.538 -2.557 6 4 2 0 0 0 0.45045 1 8304 8304 6.6304 0 1 1732600 + 64573 17376 42990 43954 75375 75375 0.0730260251141317 TLKRKCHF 8 Unmodified _TLKRKCHF_ 0 0 0 ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENST00000525707.1_1_11:34482779-34490041:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7908325195312 2 516.792204 1031.56985 1.3101 0.00067706 -1.7576 -0.00090833 -0.4475 -0.00023126 516.7918069503239 96.734 0.35395 90.558 90.387 90.741 -6.1757 35 19 3 0 0 0 0.65867 1 64074 64074 20.871 5.6227 1 23970000 64574 14801 42991 43955 75376 75376 0.055332327648102364 TLKRPKRPPL 10 Unmodified _TLKRPKRPPL_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;ENST00000549620.5_1_12:50898851-51072694:+|nuORF;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000066084|ENST00000301180|DIP2B;ENSG00000151240|ENST00000280886|DIP2C ENSG00000066084|ENST00000301180|DIP2B MSMS AL20221201_MKP_PDAC_01 4 603.31640625 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 100.45 1 94.273 93.773 94.773 -6.1757 0 0 0 0.91523 1 67171 67171 7.2892 0 1 64575 927;6717;6100 42992 43956 75377 75377 0.18261343584663337 TLKWGRTF 8 Unmodified _TLKWGRTF_ 0 0 0 REV__ENSG00000085563|ENST00000622132|ABCB1 REV__ENSG00000085563|ENST00000622132|ABCB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.3051147460938 2 504.784902 1007.55525 -0.33728 -0.00017026 -0.65805 -0.00033217 -0.99533 -0.00050243 504.78500721608697 70.162 0.28642 69.683 69.627 69.914 -0.47903 22 13 2 0 0 0 8.7369 1 38336 38336 7.9102 2.6795 1 827150 + 64576 17754 42993 43957 75378 75378 0.05177483888326151 TLLAAKMPW 9 Unmodified _TLLAAKMPW_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7915649414062 2 515.791338 1029.56812 -0.45345 -0.00023389 2.1485 0.0011082 1.695 0.00087429 515.7921463820297 34.274 0.13837 34.274 34.207 34.345 0 11 6 2 0 0 0 0.2143 1 18057 18057 21.747 0.20967 1 1950900 + 64577 23101 42994 43958 75379 75379 0.05452178956215903 TLLDEVILG 9 Unmodified _TLLDEVILG_ 0 0 0 ENST00000507810.5_1_5:111479536-111545647:-|nuORF ENST00000507810.5_1_5:111479536-111545647:-|nuORF ENST00000507810.5_1_5:111479536-111545647:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5774536132812 1 972.561189 971.553913 0.23768 0.00023116 -1.5662 -0.0015232 -1.3285 -0.0012921 972.5596205193013 99.9 0.14649 99.743 99.669 99.815 -0.15751 13 4 4 0 0 0 0.41742 1 54513 54513 11.64 0 1 31026000 64578 14546 42995 43959 75380 75380 0.06699805008906878 TLLDFINAV 9 Unmodified _TLLDFINAV_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-2|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2845764160156 2 503.2844 1004.55425 1.3739 0.00069145 -1.6451 -0.00082794 -0.27119 -0.00013649 503.28446563558657 101.05 0.29946 94.876 94.78 95.079 -6.1757 33 17 3 0 0 0 0.03568 1 67706 67706 52.268 7.8613 1 59855000 64579 601 42996 43960 75381 75381 0.05215224728760859 TLLDRMVHL 9 Unmodified _TLLDRMVHL_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5429077148438 3 366.54271 1096.6063 0.65891 0.00024152 -0.21189 -7.7668E-05 0.44702 0.00016385 366.5428781836743 64.249 0.50155 63.764 63.492 63.993 -0.48512 45 23 3 0 0 0 0.18144 1 35053 35053 24.991 10.586 1 2294900 64580 1921 42997 43961 75382 75382 0.061860648708716326 TLLDRMVHL 9 Unmodified _TLLDRMVHL_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5433349609375 3 366.54271 1096.6063 0.84086 0.00030821 0.19238 7.0517E-05 1.0332 0.00037873 366.54293756624844 63.803 0.36786 63.793 63.552 63.919 -0.010532 43 17 4 0 0 0 0.091924 1 34903 34903 34.932 15.57 1 6218700 64581 1921 42997 43961 75383 75383 0.061860648708716326 TLLDRMVHL 9 Unmodified _TLLDRMVHL_ 0 0 0 ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5431823730469 3 366.54271 1096.6063 1.6222 0.0005946 -0.60476 -0.00022167 1.0174 0.00037293 366.54255978371356 92.258 0.88837 86.082 85.631 86.519 -6.1757 92 52 3 0 0 0 0.030212 2 60906 60906;61028 55.235 37.075 1 51238000 64582 1921 42997 43961 75384;75385 75384 0.061860648708716326 TLLDSTWNL 9 Unmodified _TLLDSTWNL_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.77880859375 2 531.776939 1061.53933 NaN NaN NaN NaN NaN NaN NaN 83.798 1 83.298 82.798 83.798 -0.49961 0 0 0 0.46757 1 45865 45865 16.942 4.4107 1 64583 3650 42998 43962 75386 75386 0.011017328607522359 TLLDSTWNL 9 Unmodified _TLLDSTWNL_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7776489257812 2 531.776939 1061.53933 0.17511 9.3121E-05 -0.43219 -0.00022983 -0.25707 -0.00013671 531.7766777695637 93.084 0.61745 86.908 86.545 87.163 -6.1757 102 43 3 0 0 0 0.06187 2 61460 61460;61597 42.095 20.348 1 62031000 64584 3650 42998 43962 75387;75388 75387 0.011017328607522359 TLLEAPASL 9 Unmodified _TLLEAPASL_ 0 0 0 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 REV__nc|ENSG00000163482|Q9NRP7-2|STK36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7639465332031 2 457.7633 913.512048 NaN NaN NaN NaN NaN NaN NaN 68.248 1 68.248 67.748 68.748 0 0 0 0 0.82739 1 38048 38048 4.3292 0 1 + 64585 29743 42999 43963 75389 75389 0.05183249320384675 TLLEDGTFKV 10 Unmodified _TLLEDGTFKV_ 0 0 0 ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1 ENST00000575002.5_1_16:4517092-4524613:-|nuORF ENST00000575002.5_1_16:4517092-4524613:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.3096923828125 2 561.805697 1121.59684 0.77653 0.00043626 1.9027 0.001069 2.6793 0.0015052 561.8066300752239 60.367 0.31619 60.367 60.178 60.494 0 30 13 3 0 0 0 0.061704 1 33651 33651 55.235 5.3016 1 3586400 64586 6264 43000 43964 75390 75390 0.04090575066334168 TLLEGFAGV 9 Unmodified _TLLEGFAGV_ 0 0 0 nc|ENSG00000126883|P35658-5|NUP214;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;ENST00000525980.5_1_9:134025776-134070755:+|nuORF nc|ENSG00000126883|P35658-5|NUP214 nc|ENSG00000126883|P35658-5|NUP214 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7506713867188 2 453.750193 905.485833 NaN NaN NaN NaN NaN NaN NaN 69.336 1 69.336 68.836 69.836 0 0 0 0 0.6306 1 38632 38632 11.64 0 1 64587 16175 43001 43965 75391 75391 0.029309801489148413 TLLEKDYFL 9 Unmodified _TLLEKDYFL_ 0 0 0 nc|ENSG00000154845|Q8TF05-2|PPP4R1;ENST00000285124.12_1_18:9547789-9562973:-|nuORF;ENSG00000154845|ENST00000400556|PPP4R1;ENST00000582594.5_1_18:9547789-9550464:-|nuORF nc|ENSG00000154845|Q8TF05-2|PPP4R1 nc|ENSG00000154845|Q8TF05-2|PPP4R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.3107299804688 2 571.310615 1140.60668 0.51074 0.00029179 -0.17871 -0.0001021 0.33203 0.00018969 571.3106435704718 67.928 0.28799 67.928 67.788 68.076 0 25 14 2 0 0 0 0.085319 1 37857 37857 36.506 17.249 1 1541800 64588 16284 43002 43966 75392 75392 0.041997630717105494 TLLELHLDY 9 Unmodified _TLLELHLDY_ 0 0 0 ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3017578125 2 558.800414 1115.58628 0.40282 0.0002251 0.56719 0.00031695 0.97002 0.00054204 558.8007821717486 75.85 0.31216 75.85 75.647 75.959 0 32 13 3 0 0 0 0.41742 1 42118 42118 11.64 0 1 1568600 64589 2463 43003 43967 75393 75393 0.03310592411912694 TLLEPRKIVF 10 Unmodified _TLLEPRKIVF_ 0 0 0 REV__nc|ENSG00000263001|P78347-2|GTF2I REV__nc|ENSG00000263001|P78347-2|GTF2I MSMS AL20221201_MKP_PDAC_01 4 405.9190979003906 3 405.920174 1214.73869 NaN NaN NaN NaN NaN NaN NaN 19.241 1 16.585 16.085 17.085 -2.6564 0 0 0 0.9731 1 10176 10176 3.5871 1.6807 1 + 64590 24595 43004 43968 75394 75394 0.13991412879317977 TLLERKWLL 9 Unmodified _TLLERKWLL_ 0 0 0 ENST00000299381.4_1_10:73975879-73983808:+|nuORF;ENST00000470481.2_1_10:73983622-73983808:+|nuORF ENST00000299381.4_1_10:73975879-73983808:+|nuORF ENST00000299381.4_1_10:73975879-73983808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.363525390625 2 586.363516 1170.71248 0.96954 0.0005685 -0.44694 -0.00026207 0.52261 0.00030644 586.3630104222286 66.861 0.27161 66.879 66.713 66.985 0.018036 27 12 3 0 0 0 0.022193 1 36679 36679 61.357 7.5247 1 6733100 64591 11544 43005 43969 75395 75395 0.1339514370786219 TLLETEMLL 9 Oxidation (M) _TLLETEM(Oxidation (M))LL_ TLLETEM(1)LL TLLETEM(67)LL 0 0 1 ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44;ENST00000508483.1_1_4:175229968-175237474:+|nuORF ENSG00000164118|ENST00000503780|CEP44 ENSG00000164118|ENST00000503780|CEP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.788330078125 2 539.788658 1077.56276 0.2416 0.00013041 -0.0033857 -1.8275E-06 0.23821 0.00012858 539.7887125642227 76.201 0.34914 76.201 76.021 76.37 0 32 14 3 0 0 0 0.016184 1 42346 42346 67.344 42.67 1 4098800 64592 7144 43006 43970 75396 75396 1231 0.027084105830681438 TLLGGVPL 8 Unmodified _TLLGGVPL_ 0 0 0 ENST00000493195.5_1_1:159902482-159902782:-|nuORF ENST00000493195.5_1_1:159902482-159902782:-|nuORF ENST00000493195.5_1_1:159902482-159902782:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.2439880371094 2 385.244547 768.47454 NaN NaN NaN NaN NaN NaN NaN 58.573 1 52.499 51.999 52.999 -6.0745 0 0 0 0.97444 1 37538 37538 2.3027 0 1 64593 14310 43007 43971 75397 75397 0.0810420284542488 TLLGHEFVL 9 Unmodified _TLLGHEFVL_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.79296875 2 514.792392 1027.57023 0.59499 0.0003063 0.47182 0.00024289 1.0668 0.00054919 514.7926059983021 72.875 0.48657 72.399 72.23 72.717 -0.47588 67 21 4 0 0 0 0.0088975 2 39929 39834;39929 104.8 53.944 1 20406000 64594 290 43008 43972 75398;75399 75399 0.057549309656678815 TLLGHEFVL 9 Unmodified _TLLGHEFVL_ 0 0 0 ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.7922973632812 2 514.792392 1027.57023 0.27386 0.00014098 0.50726 0.00026113 0.78112 0.00040212 514.7928206791462 72.353 0.48401 72.395 72.256 72.74 0.041733 42 22 3 0 0 0 0.022193 1 39833 39833 61.357 34.474 1 3442800 64595 290 43008 43972 75400 75400 0.057549309656678815 TLLHFLAEL 9 Unmodified _TLLHFLAEL_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8086547851562 2 528.808042 1055.60153 1.8568 0.00098188 0.073011 3.8609E-05 1.9298 0.0010205 528.8080947463503 93.626 0.44602 93.649 93.494 93.941 0.022987 35 17 3 0 0 0 0.016184 1 52037 52037 67.344 26.895 1 3921200 64596 4334 43009 43973 75401 75401 0.07595503999755238 TLLHFLAEL 9 Unmodified _TLLHFLAEL_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 528.808042 1055.60153 0.30873 0.00016326 -1.3209 -0.00069849 -1.0121 -0.00053522 528.8075345745153 99.772 0.13895 93.596 93.525 93.664 -6.1757 -0.026252 -0.001219 NaN 67.344 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 48823000 64597 4334 43009 43973 0.07595503999755238 TLLICHKY 8 Unmodified _TLLICHKY_ 0 0 0 ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3 ENSG00000122025|ENST00000241453|FLT3 ENSG00000122025|ENST00000241453|FLT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7788391113281 2 495.775688 989.536823 0.20627 0.00010226 4.4581 0.0022102 4.6644 0.0023125 495.77813378919996 79.275 0.22862 79.275 79.121 79.35 0 13 9 2 0 0 0 8.7369 1 44058 44058 2.8892 0 1 401280 64598 3617 43010 43974 75402 75402 0.041636059221104915 TLLKALLEI 9 Unmodified _TLLKALLEI_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521480.1_1_8:39780074-39781137:+|nuORF;ENST00000253513.11_1_8:39780074-39782780:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3337707519531 2 507.333893 1012.65323 0.4288 0.00021754 -0.14095 -7.1511E-05 0.28784 0.00014603 507.33381632153646 89.125 0.24107 89.173 89.048 89.289 0.047852 13 8 2 0 0 0 0.0081887 1 49606 49606 93.166 24.061 1 8606600 64599 4309 43011 43975 75403 75403 0.14741247693655168 TLLKALLEI 9 Unmodified _TLLKALLEI_ 0 0 0 ENSG00000131203|ENST00000518237|IDO1;ENST00000521480.1_1_8:39780074-39781137:+|nuORF;ENST00000253513.11_1_8:39780074-39782780:+|nuORF ENSG00000131203|ENST00000518237|IDO1 ENSG00000131203|ENST00000518237|IDO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.334228515625 2 507.333893 1012.65323 0.69785 0.00035404 -0.088309 -4.4802E-05 0.60954 0.00030924 507.3338555451006 100.53 0.12675 94.352 94.291 94.418 -6.1757 17 7 3 0 0 0 0.0061223 1 67241 67241 114.2 25.248 1 60290000 64600 4309 43011 43975 75404 75404 0.14741247693655168 TLLKKVWKV 9 Unmodified _TLLKKVWKV_ 0 0 0 ENSG00000152359|ENST00000428202|POC5;nc|ENSG00000152359|Q8NA72-2|POC5;nc|ENSG00000152359|Q8NA72-3|POC5 ENSG00000152359|ENST00000428202|POC5 ENSG00000152359|ENST00000428202|POC5 MSMS AL20221201_MKP_PDAC_01 4 372.2503967285156 3 372.249743 1113.7274 NaN NaN NaN NaN NaN NaN NaN 86.333 1 80.157 79.657 80.657 -6.1757 0 0 0 0.59271 1 56916 56916 12.873 3.8964 1 64601 6180 43012 43976 75405 75405 0.17508635575859444 TLLLRRKFF 9 Unmodified _TLLLRRKFF_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2;ENST00000378192.2_1_9:35723947-35725691:-|nuORF;ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000171914|ENST00000636159|TLN2;ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3819580078125 2 597.3795 1192.74445 NaN NaN NaN NaN NaN NaN NaN 103.72 1 103.68 103.18 104.18 -0.048615 0 0 0 0.85798 1 57601 57601 0.52476 0 1 64602 4898;8159 43013 43977 75406 75406 0.15578556181640124 TLLLSVCLPI 10 Unmodified _TLLLSVCLPI_ 0 0 0 REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8 REV__nc|ENSG00000242366|Q9HAW9-2|UGT1A8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 358.2188720703125 3 357.887594 1070.64095 1.3841 0.00049534 1.3814 0.00049438 2.7655 0.00098973 357.8880191448437 43.046 0.20304 38.281 38.161 38.364 -4.7648 17 12 2 0 0 0 0.23227 1 26014 26014 1.7423 0 1 9866500 + 64603 24461 43014 43978 75407 75407 0.10845887958976164 TLLNSTLFL 9 Unmodified _TLLNSTLFL_ 0 0 0 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-6|ZFYVE27;nc|ENSG00000155256|Q5T4F4-5|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 nc|ENSG00000155256|Q5T4F4-4|ZFYVE27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3009338378906 2 511.30005 1020.58555 2.5975 0.0013281 -1.7171 -0.00087798 0.88039 0.00045014 511.29914216846583 96.352 0.31303 96.345 96.192 96.505 -0.007019 15 10 2 0 0 0 0.41742 1 53528 53528 11.64 2.2929 1 1815700 64604 6377 43015 43979 75408 75408 0.07607797762852897 TLLPLRVFL 9 Unmodified _TLLPLRVFL_ 0 0 0 ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.351318359375 2 536.349877 1070.6852 3.3199 0.0017806 3.2637 0.0017505 6.5836 0.0035311 536.3516536360671 97.795 0.33389 97.777 97.651 97.985 -0.018188 34 11 4 0 0 0 0.011968 1 54322 54322 74.929 26.583 1 7640800 64605 7914 43016 43980 75409 75409 0.15268660167453163 TLLPLRVFL 9 Unmodified _TLLPLRVFL_ 0 0 0 ENSG00000169762|ENST00000405303|TAPT1;nc|ENSG00000169762|Q6NXT6-2|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 ENSG00000169762|ENST00000405303|TAPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3507690429688 2 536.349877 1070.6852 1.3911 0.0007461 -0.7149 -0.00038343 0.67617 0.00036266 536.3490240049003 100.79 0.17786 94.619 94.57 94.748 -6.1757 25 11 4 0 0 0 0.015445 1 67490 67490 68.081 11.904 1 108290000 64606 7914 43016 43980 75410 75410 0.15268660167453163 TLLPTLQV 8 Unmodified _TLLPTLQV_ 0 0 0 ENSG00000158286|ENST00000377939|RNF207;nc|ENSG00000158286|Q6ZRF8-3|RNF207;ENST00000496676.5_1_1:6269476-6272097:+|nuORF;ENST00000485539.5_1_1:6269452-6270654:+|nuORF;nc|ENSG00000158286|Q6ZRF8-4|RNF207 ENSG00000158286|ENST00000377939|RNF207 ENSG00000158286|ENST00000377939|RNF207 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7770690917969 2 442.776211 883.537869 0.98642 0.00043676 1.5542 0.00068817 2.5406 0.0011249 442.77685851615297 65.365 0.23692 65.365 65.241 65.478 7.6294E-06 17 10 2 0 0 0 0.80676 1 35853 35853 2.5775 0 1 6612700 64607 6575 43017 43981 75411 75411 0.09144143562673435 TLLQLTVLS 9 Unmodified _TLLQLTVLS_ 0 0 0 REV__ENSG00000164815|ENST00000297431|ORC5 REV__ENSG00000164815|ENST00000297431|ORC5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.790283203125 2 494.307875 986.601197 1.0397 0.00051394 -1.2639 -0.00062476 -0.22419 -0.00011082 494.3065712702695 99.463 0.12656 93.287 93.214 93.341 -6.1757 11 7 2 0 0 0 0.18521 1 66280 66280 7.2892 0 1 15665000 + 64608 21953 43018 43982 75412 75412 0.10736084279892566 TLLQRVDSY 9 Unmodified _TLLQRVDSY_ 0 0 0 nc|ENSG00000077327|O75602-4|SPAG6;nc|ENSG00000077327|O75602-5|SPAG6;ENSG00000077327|ENST00000376624|SPAG6;nc|ENSG00000077327|O75602-3|SPAG6 nc|ENSG00000077327|O75602-4|SPAG6 nc|ENSG00000077327|O75602-4|SPAG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.795654296875 2 547.795663 1093.57677 NaN NaN NaN NaN NaN NaN NaN 56.186 1 56.186 55.686 56.686 0 0 0 0 0.20153 1 31241 31241 30.637 0 1 64609 1214 43019 43983 75413 75413 0.03372824126381602 TLLRCPSKKK 10 Unmodified _TLLRCPSKKK_ 0 0 0 ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3 ENSG00000183625|ENST00000395940|CCR3 ENSG00000183625|ENST00000395940|CCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3590698242188 2 587.36045 1172.70635 NaN NaN NaN NaN NaN NaN NaN 103.74 1 103.69 103.19 104.19 -0.048737 0 0 0 0.99248 1 57607 57607 1.4819 0 1 64610 9170 43020 43984 75414 75414 0.12690302204646287 TLLRDWDLW 9 Unmodified _TLLRDWDLW_ 0 0 0 nc|ENSG00000181704|Q96EC8-2|YIPF6;ENSG00000181704|ENST00000462683|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 nc|ENSG00000181704|Q96EC8-2|YIPF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.550048828125 3 406.548629 1216.62406 0.69655 0.00028318 2.1772 0.00088516 2.8738 0.0011683 406.5497232018781 47.285 0.18273 46.933 46.817 47 -0.3526 18 8 3 0 0 0 0.49766 1 25340 25340 7.609 1.8255 1 2868100 64611 8990 43021 43985 75415 75415 0.02441103397381994 TLLRFTSAF 9 Unmodified _TLLRFTSAF_ 0 0 0 REV__ENSG00000111652|ENST00000543155|COPS7A REV__ENSG00000111652|ENST00000543155|COPS7A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.274169921875 2 528.297842 1054.58113 0.5467 0.00028882 -0.30204 -0.00015957 0.24466 0.00012925 528.7994088553834 72.588 0.14612 72.112 72.063 72.209 -0.47609 9 6 2 0 0 0 0.19891 1 39739 39739 11.64 0 1 639780 + 64612 18761 43022 43986 75416 75416 0.05602333339948018 TLLRLLYEA 9 Unmodified _TLLRLLYEA_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENST00000524711.5_1_11:32608681-32615496:+|nuORF ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3273315429688 2 546.326599 1090.63865 0.27857 0.00015219 0.76341 0.00041707 1.042 0.00056926 546.326845913412 74.564 0.41869 74.61 74.435 74.854 0.045967 38 18 3 0 0 0 0.022461 1 41103 41103 61.09 29.822 1 5405300 64613 5983 43023 43987 75417 75417 0.09695175545539314 TLLRLLYEA 9 Unmodified _TLLRLLYEA_ 0 0 0 ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENST00000524711.5_1_11:32608681-32615496:+|nuORF ENSG00000149100|ENST00000531120|EIF3M ENSG00000149100|ENST00000531120|EIF3M MSMS AL20221201_MKP_PDAC_01 4 546.3270874023438 2 546.326599 1090.63865 NaN NaN NaN NaN NaN NaN NaN 97.762 1 91.586 91.086 92.086 -6.1757 0 0 0 0.54558 1 64794 64794 14.405 0.49933 1 64614 5983 43023 43987 75418 75418 0.09695175545539314 TLLSGITL 8 Unmodified _TLLSGITL_ 0 0 0 REV__ENSG00000121281|ENST00000673801|ADCY7 REV__ENSG00000121281|ENST00000673801|ADCY7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2558288574219 2 409.255111 816.49567 -0.01479 -6.0528E-06 0.3392 0.00013882 0.32441 0.00013277 409.25532705994317 62.835 0.32854 62.835 62.679 63.008 0 27 13 3 0 0 0 0.44122 1 35019 35019 40.449 0 1 3010100 + 64615 19285 43024 43988 75419 75419 0.08008168154299256 TLLSKVGF 8 Unmodified _TLLSKVGF_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8855285644531 2 432.763104 863.511654 0.5461 0.00023633 3.065 0.0013264 3.6111 0.0015628 432.76431243034415 68.077 0.2066 68.102 67.941 68.148 0.025146 14 9 2 0 0 0 8.7369 1 37377 37377 0.69038 0 1 2006500 + 64616 20378 43025 43989 75420 75420 0.07443874391196914 TLLSRLLL 8 Unmodified _TLLSRLLL_ 0 0 0 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 ENSG00000176076|ENST00000372101|KCNE5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.3148498535156 2 464.813128 927.611703 1.5467 0.00071892 0.089596 4.1645E-05 1.6363 0.00076057 464.81302576851004 105.25 0.2296 99.075 98.952 99.182 -6.1757 153 52 4 0 0 0 0.80992 2 70452 70452;70592 0.69038 0 1 1191200000 64617 8562 43026 43990 75421;75422 75421 0.14500111725010356 TLLSTLLSLI 10 Unmodified _TLLSTLLSLI_ 0 0 0 nc|ENSG00000179676|Q7Z4B0|LINC00305 nc|ENSG00000179676|Q7Z4B0|LINC00305 nc|ENSG00000179676|Q7Z4B0|LINC00305 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3449096679688 2 537.344458 1072.67436 1.4721 0.00079102 0.14518 7.8011E-05 1.6173 0.00086903 537.3446169536599 106.06 0.70796 99.881 99.59 100.3 -6.1757 159 99 2 0 0 0 0.72607 2 70985 70985;71092 0 0 1 7603200 64618 16421 43027 43991 75423;75424 75423 0.140932130025476 TLLTAIVKL 9 Unmodified _TLLTAIVKL_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3292846679688 2 486.328611 970.642668 0.94316 0.00045869 0.58311 0.00028358 1.5263 0.00074227 486.3288489312306 82.918 0.39314 82.98 82.788 83.181 0.062004 34 14 3 0 0 0 0.0082661 1 45836 45836 92.491 35.02 1 15313000 64619 329 43028 43992 75425 75425 0.15617265039236372 TLLTAIVKL 9 Unmodified _TLLTAIVKL_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.3287353515625 2 486.328611 970.642668 0.4152 0.00020193 0.20353 9.8983E-05 0.61873 0.00030091 486.32859213428907 98.702 0.16126 92.526 92.441 92.602 -6.1757 27 11 3 0 0 0 0.0059585 1 65504 65504 114.65 49.414 1 164300000 64620 329 43028 43992 75426 75426 0.15617265039236372 TLLTLEPL 8 Unmodified _TLLTLEPL_ 0 0 0 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 MSMS AL20221201_MKP_PDAC_01 4 450.2754821777344 2 450.276044 898.537535 NaN NaN NaN NaN NaN NaN NaN 104.99 1 98.81 98.31 99.31 -6.1757 0 0 0 0.97444 1 70286 70286 0.69038 0 1 + 64621 29966 43029 43993 75427 75427 0.08420723842812095 TLLVDLAYL 9 Unmodified _TLLVDLAYL_ 0 0 0 REV__ENSG00000128908|ENST00000648947|INO80 REV__ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2997436523438 2 510.802426 1019.5903 0.35959 0.00018368 0.21924 0.00011199 0.57884 0.00029567 510.8024204650018 100.6 0.19802 94.427 94.33 94.528 -6.1757 42 13 4 0 0 0 0.12841 1 67400 67400 30.225 5.5509 1 162830000 + 64622 19641 43030 43994 75428 75428 0.08128681905623125 TLLVGHELY 9 Unmodified _TLLVGHELY_ 0 0 0 ENST00000373307.5_1_10:71164777-71168747:-|nuORF ENST00000373307.5_1_10:71164777-71168747:-|nuORF ENST00000373307.5_1_10:71164777-71168747:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.78955078125 2 522.78985 1043.56515 0.00088307 4.6166E-07 0.88492 0.00046263 0.88581 0.00046309 522.7903120896249 69.174 0.25458 68.693 68.554 68.808 -0.48071 14 10 2 0 0 0 0.41742 1 37844 37844 11.64 0 1 633170 64623 12408 43031 43995 75429 75429 0.04510627103036313 TLLVVVPKL 9 Unmodified _TLLVVVPKL_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.3390197753906 2 491.338978 980.663404 0.62373 0.00030646 -0.13902 -6.8304E-05 0.48472 0.00023816 491.33895868230746 79.163 0.33515 79.218 79.056 79.391 0.05497 27 12 3 0 0 0 0.018301 1 43725 43725 65.235 38.351 1 8092000 64624 6369 43032 43996 75430 75430 0.17229855418895568 TLLVVVPKL 9 Unmodified _TLLVVVPKL_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1;ENST00000521671.1_1_8:104064982-104075474:+|nuORF ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.3391723632812 2 491.338978 980.663404 1.2034 0.00059129 0.096738 4.7531E-05 1.3002 0.00063882 491.3389517645372 96.349 0.29993 90.174 89.989 90.289 -6.1757 39 17 3 0 0 0 0.011968 3 63911 63723;63786;63911 74.929 28.186 1 37984000 64625 6369 43032 43996 75431;75432;75433 75433 0.17229855418895568 TLLYQGFLGS 10 Unmodified _TLLYQGFLGS_ 0 0 0 REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3003540039062 2 549.795132 1097.57571 0.2801 0.000154 0.36209 0.00019908 0.6422 0.00035308 549.7949646823465 73.58 0.75585 73.624 73.272 74.028 0.043983 116 34 5 0 0 0 0.50362 1 40682 40682 16.149 5.3252 1 157760000 + 64626 17273 43033 43997 75434 75434 0.030826097574845335 TLLYQKQSN 9 Unmodified _TLLYQKQSN_ 0 0 0 REV__ENSG00000157150|ENST00000287814|TIMP4 REV__ENSG00000157150|ENST00000287814|TIMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.795654296875 2 547.795663 1093.57677 -0.55378 -0.00030336 -0.37867 -0.00020743 -0.93245 -0.00051079 547.795531156237 56.632 0.19374 56.146 56.071 56.265 -0.48554 17 11 2 0 0 0 0.19127 1 30793 30793 24.021 0 1 6594700 + 64627 21367 43034 43998 75435 75435 0.03372824126381602 TLMDILPRI 9 Unmodified _TLMDILPRI_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF;nc|ENSG00000167716|Q562E7-2|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3156127929688 2 536.315177 1070.6158 0.86308 0.00046288 1.6872 0.00090485 2.5502 0.0013677 536.3148981515441 99.279 0.15075 93.103 93.009 93.159 -6.1757 19 8 3 0 0 0 0.10247 1 66090 66090 32.786 10.049 1 37892000 64628 7661 43035 43999 75436 75436 0.08331833156398716 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(78)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7991333007812 2 538.799026 1075.5835 0.251 0.00013524 -0.2336 -0.00012586 0.017399 9.3746E-06 538.7990208703729 87.646 0.49956 87.646 87.398 87.897 0 74 22 5 0 0 0 0.010877 1 48544 48544 77.984 17.595 1 9454700 64629 2963;5514 43036 44000 75437 75437 512 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(78)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7991943359375 2 538.799026 1075.5835 0.25111 0.0001353 0.30427 0.00016394 0.55538 0.00029924 538.7992644581238 88.142 0.52203 88.142 87.897 88.419 0 94 29 5 0 0 0 0.010877 2 48840 48744;48840 77.984 22.937 1 7851400 64630 2963;5514 43036 44000 75438;75439 75439 512 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(51)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7985229492188 2 538.799026 1075.5835 0.33692 0.00018153 0.38424 0.00020703 0.72116 0.00038856 538.7991342920482 88.127 0.39456 87.623 87.411 87.805 -0.50423 39 17 3 0 0 0 0.038285 1 48165 48165 50.855 14.811 1 2279000 64631 2963;5514 43036 44000 75440 75440 512 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(51)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7998046875 2 538.799026 1075.5835 0.33051 0.00017808 2.2809 0.0012289 2.6114 0.001407 538.8001220640598 88.589 0.56512 88.085 87.89 88.455 -0.50423 56 24 4 0 0 0 0.038285 1 48495 48495 50.855 14.811 1 2032300 64632 2963;5514 43036 44000 75441 75441 512 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(42)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MSMS AL20221201_MKP_PDAC_01 4 538.9795532226562 2 538.799026 1075.5835 NaN NaN NaN NaN NaN NaN NaN 98.643 1 92.467 91.967 92.967 -6.1757 0 0 0 0.10545 1 65465 65465 42.095 7.9921 1 64633 2963;5514 43036 44000 75442 75442 512 0.0487300096274339 TLMEEVLLL 9 Oxidation (M) _TLM(Oxidation (M))EEVLLL_ TLM(1)EEVLLL TLM(74)EEVLLL 0 0 1 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MSMS AL20221201_MKP_PDAC_01 4 538.79736328125 2 538.799026 1075.5835 NaN NaN NaN NaN NaN NaN NaN 98.768 1 92.593 92.093 93.093 -6.1757 0 0 0 0.023279 1 65569 65569 74.423 16.951 1 64634 2963;5514 43036 44000 75443 75443 512 0.0487300096274339 TLMEEVLLL 9 Unmodified _TLMEEVLLL_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8018188476562 2 530.801568 1059.58858 0.25943 0.00013771 0.24704 0.00013113 0.50647 0.00026884 530.8016782251362 100.64 0.12286 100.5 100.44 100.56 -0.13293 9 4 3 0 0 0 0.036857 1 54945 54945 67.344 13.768 1 4941900 64635 2963;5514 43036 44001 75444 75444 0.06117304825352221 TLMEEVLLL 9 Unmodified _TLMEEVLLL_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8023681640625 2 530.801568 1059.58858 0.99875 0.00053014 0.69952 0.00037131 1.6983 0.00090144 530.8020462891137 100.58 0.10294 100.54 100.48 100.58 -0.04216 7 3 3 0 0 0 0.4887 1 55895 55895 12.532 6.1774 1 4331000 64636 2963;5514 43036 44001 75445 75445 0.06117304825352221 TLMEEVLLL 9 Unmodified _TLMEEVLLL_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8024291992188 2 530.801568 1059.58858 0.82659 0.00043876 0.38639 0.0002051 1.213 0.00064385 530.8018719319864 101.52 0.27003 95.34 95.125 95.395 -6.1757 31 13 4 0 0 0 0.036857 1 68103 68103 67.344 22.937 1 325890000 64637 2963;5514 43036 44001 75446 75446 0.06117304825352221 TLMEEVLLLGL 11 Unmodified _TLMEEVLLLGL_ 0 0 0 ENSG00000113384|ENST00000265070|GOLPH3;ENST00000479757.1_1_1:150667092-150667320:-|nuORF;GOLPH3L-HORMAD1|1|fusion;nc|ENSG00000143457|Q9H4A5-2|GOLPH3L;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3;ENSG00000143457|ENST00000271732|GOLPH3L ENSG00000113384|ENST00000265070|GOLPH3 MSMS AL20221201_MKP_PDAC_01 4 615.8558349609375 2 615.854332 1229.69411 NaN NaN NaN NaN NaN NaN NaN 102.45 1 96.272 95.772 96.772 -6.1757 0 0 0 0.062623 1 68749 68749 58.679 33.28 1 64638 2963;5514 43037 44002 75447 75447 0.08845220950979638 TLMERTVSL 9 Oxidation (M) _TLM(Oxidation (M))ERTVSL_ TLM(1)ERTVSL TLM(72)ERTVSL 0 0 1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2842407226562 2 533.284074 1064.5536 0.34091 0.0001818 0.26411 0.00014084 0.60502 0.00032265 533.2843611845908 38.122 0.49669 38.122 37.724 38.22 0 70 24 4 0 0 0 0.013118 3 20205 20191;20205;20312 71.708 33.734 1 19722000 64639 9991 43038 44003 75448;75449;75450 75449 1616 0.023900620173890275 TLMERTVSL 9 Unmodified _TLMERTVSL_ 0 0 0 nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.287109375 2 525.286617 1048.55868 1.2845 0.00067472 -0.56428 -0.00029641 0.72019 0.00037831 525.2865676484764 53.867 0.59622 48.063 47.831 48.427 -5.8042 73 35 3 0 0 0 0.020316 2 33983 33983;34145 63.227 21.133 1 61987000 64640 9991 43038 44004 75451;75452 75451 0.03634365880020596 TLMNLHVYI 9 Oxidation (M) _TLM(Oxidation (M))NLHVYI_ TLM(1)NLHVYI TLM(52)NLHVYI 0 0 1 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2984619140625 2 560.296985 1118.57942 0.92337 0.00051736 0.73428 0.00041142 1.6577 0.00092878 560.2975838574476 62.291 0.29997 61.803 61.615 61.915 -0.48764 29 13 3 0 0 0 0.03568 1 33925 33925 52.268 26.869 1 3272900 64641 2242 43039 44005 75453 75453 386 0.024869562596677497 TLMNLHVYI 9 Oxidation (M) _TLM(Oxidation (M))NLHVYI_ TLM(1)NLHVYI TLM(56)NLHVYI 0 0 1 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2978515625 2 560.296985 1118.57942 0.79004 0.00044265 2.0345 0.0011399 2.8245 0.0015826 560.2986279186609 62.631 0.2419 62.143 62.019 62.261 -0.48764 22 11 3 0 0 0 0.028475 1 34144 34144 56.177 23.872 1 5201700 64642 2242 43039 44005 75454 75454 386 0.024869562596677497 TLMNLHVYI 9 Oxidation (M) _TLM(Oxidation (M))NLHVYI_ 0 0 1 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.296985 1118.57942 0.67241 0.00037675 -0.89602 -0.00050204 -0.22361 -0.00012529 560.2963131919953 61.87 0.41306 61.838 61.65 62.063 -0.032787 0.017269 -0.00093072 NaN 52.268 28 20 2 NaN NaN NaN NaN 0 NaN NaN 0 4007000 64643 2242 43039 44005 386 0.024869562596677497 TLMNLHVYI 9 Unmodified _TLMNLHVYI_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2996826171875 2 552.299527 1102.5845 0.25587 0.00014132 4.2651 0.0023556 4.521 0.002497 552.8040269135465 75.718 0.30618 75.765 75.582 75.888 0.047951 29 13 3 0 0 0 0.32871 1 41752 41752 15.847 3.3156 1 4640600 64644 2242 43039 44006 75455 75455 0.03731260122299318 TLMNLYWF 8 Unmodified _TLMNLYWF_ 0 0 0 nc|ENSG00000223802|P27544-2|CERS1;ENSG00000223802|ENST00000623882|CERS1 nc|ENSG00000223802|P27544-2|CERS1 nc|ENSG00000223802|P27544-2|CERS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2694702148438 2 544.267696 1086.52084 0.46218 0.00025155 3.0506 0.0016604 3.5128 0.0019119 544.2692759408847 74.43 0.40264 74.43 74.137 74.54 0 29 18 2 0 0 0 0.80143 1 41303 41303 5.7604 0 1 753230 64645 10576 43040 44007 75456 75456 -0.018961003147978772 TLMVSARSSL 10 Unmodified _TLMVSARSSL_ 0 0 0 ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD ENSG00000187730|ENST00000378585|GABRD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2874145507812 2 532.792066 1063.56958 -0.02932 -1.5622E-05 -4.2318 -0.0022547 -4.2611 -0.0022703 532.7906226381023 38.105 0.4692 37.833 37.681 38.15 -0.27133 50 21 3 0 0 0 0.63399 1 20124 20124 9.3831 0 1 12238000 64646 9587 43041 44008 75457 75457 0.040337682542940456 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.79150390625 2 576.288202 1150.56185 0.31252 0.0001801 -0.52534 -0.00030275 -0.21282 -0.00012265 576.7891250390857 37.856 0.36865 37.856 37.68 38.049 0 54 17 4 0 0 0 0.016848 1 20172 20172 80.676 24.499 1 5794200 64647 1399 43042 44009 75458 75458 -0.007406677416156526 TLNDREYQL 9 Unmodified _TLNDREYQL_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7933959960938 2 576.288202 1150.56185 0.89784 0.00051741 4.2721 0.002462 5.1699 0.0029794 576.79319801137 42.905 0.29187 38.22 38.107 38.398 -4.6846 42 18 3 0 0 0 0.0083595 1 25989 25989 106.94 40.483 1 16510000 64648 1399 43042 44009 75459 75459 -0.007406677416156526 TLNELFARFD 10 Unmodified _TLNELFARFD_ 0 0 0 nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6;ENST00000551435.1_1_12:49171156-49171914:-|nuORF;nc|ENSG00000173175|O95622-2|ADCY5;ENSG00000173175|ENST00000462833|ADCY5 nc|ENSG00000174233|O43306-2|ADCY6 nc|ENSG00000174233|O43306-2|ADCY6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.3461303710938 2 613.31422 1224.61389 1.4585 0.0008945 1.2007 0.00073643 2.6592 0.0016309 613.8170130207321 81.259 0.13312 81.319 81.237 81.371 0.059929 6 4 2 0 0 0 0.2362 1 44963 44963 4.5289 1.2476 1 933480 64649 8404 43043 44010 75460 75460 0.010564956721282215 TLNERGSDMKI 11 Unmodified _TLNERGSDMKI_ 0 0 0 REV__ENST00000269205.5_1_18:29340737-29340818:-|nuORF REV__ENST00000269205.5_1_18:29340737-29340818:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8238525390625 2 632.321719 1262.62889 0.97807 0.00061845 -0.2539 -0.00016055 0.72417 0.00045791 632.321110548763 90.921 0.39584 84.745 84.543 84.939 -6.1757 37 23 2 0 0 0 0.088819 1 60048 60048 43.772 0 1 8021700 + 64650 25121 43044 44011 75461 75461 0.008076194778368517 TLNHLMGF 8 Unmodified _TLNHLMGF_ 0 0 0 ENST00000405460.7_2_5:90052922-90055235:+|nuORF ENST00000405460.7_2_5:90052922-90055235:+|nuORF ENST00000405460.7_2_5:90052922-90055235:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 466.73828125 2 466.736563 931.458573 NaN NaN NaN NaN NaN NaN NaN 21.822 1 19.087 18.587 19.587 -2.7348 0 0 0 0.95973 1 11711 11711 8.5933 0 1 64651 12922 43045 44012 75462 75462 -0.009898266631125807 TLNLEVPTY 9 Unmodified _TLNLEVPTY_ 0 0 0 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 nc|ENSG00000226085|P0C7P4|UQCRFS1P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2791137695312 2 525.279315 1048.54408 0.035094 1.8434E-05 0.42714 0.00022437 0.46224 0.0002428 525.2794065213734 70.265 0.35555 69.786 69.627 69.983 -0.47903 55 17 4 0 0 0 0.2143 1 38506 38506 21.747 0 1 15071000 64652 16553 43046 44013 75463 75463 0.02174617003538515 TLNLLELHH 9 Unmodified _TLNLLELHH_ 0 0 0 ENSG00000174600|ENST00000550402|CMKLR1;nc|ENSG00000174600|Q99788-2|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.873291015625 3 363.873224 1088.59784 0.041433 1.5076E-05 1.3929 0.00050684 1.4343 0.00052192 363.8740839145024 34.464 0.56672 34.492 34.101 34.668 0.027401 48 26 3 0 0 0 0.32871 1 18221 18221 10.8 0 1 6393700 64653 8439 43047 44014 75464 75464 0.057088342259021374 TLNNLEIFL 9 Unmodified _TLNNLEIFL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.8012084960938 2 538.802957 1075.59136 0.23154 0.00012475 -1.9072 -0.0010276 -1.6756 -0.00090284 538.8015754753493 97.725 0.14219 97.482 97.371 97.514 -0.24277 9 6 2 0 0 0 0.020973 1 53372 53372 62.573 14.824 1 6330800 64654 3189 43048 44015 75465 75465 0.05658896274530889 TLNNLEIFL 9 Unmodified _TLNNLEIFL_ 0 0 0 nc|ENSG00000116062|P52701-4|MSH6;nc|ENSG00000116062|P52701-3|MSH6;ENSG00000116062|ENST00000234420|MSH6;nc|ENSG00000116062|P52701-2|MSH6 nc|ENSG00000116062|P52701-4|MSH6 nc|ENSG00000116062|P52701-4|MSH6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8023071289062 2 538.802957 1075.59136 0.46751 0.0002519 0.076736 4.1345E-05 0.54425 0.00029324 538.8028305473401 100.57 0.18143 94.397 94.291 94.472 -6.1757 18 11 2 0 0 0 0.010818 1 67287 67287 78.149 25.881 1 75668000 64655 3189 43048 44015 75466 75466 0.05658896274530889 TLNPYFNESF 10 Unmodified _TLNPYFNESF_ 0 0 0 ENSG00000143858|ENST00000367268|SYT2 ENSG00000143858|ENST00000367268|SYT2 ENSG00000143858|ENST00000367268|SYT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1891479492188 3 411.192511 1230.5557 0.30889 0.00012701 0.65945 0.00027116 0.96833 0.00039817 411.19258797812824 23.188 0.8246 20.409 19.857 20.681 -2.7784 213 65 6 0 0 0 0.62068 2 12217 12217;12329 5.7834 2.4638 1 131750000 64656 5561 43049 44016 75467;75468 75467 -0.05035185973156331 TLNREVIF 8 Unmodified _TLNREVIF_ 0 0 0 REV__ENST00000422689.2_1_19:52887755-52887863:+|nuORF REV__ENST00000422689.2_1_19:52887755-52887863:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.286376953125 2 496.282192 990.549831 1.2132 0.00060211 4.0044 0.0019873 5.2177 0.0025894 496.28461356785465 100.74 0.095024 94.564 94.528 94.623 -6.1757 10 6 2 0 0 0 0.37649 1 67455 67455 46.921 2.5139 1 18475000 + 64657 26860 43050 44017 75469 75469 0.05417760305851971 TLNSAAVTV 9 Unmodified _TLNSAAVTV_ 0 0 0 ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1 ENST00000460499.5_1_2:27659579-27664676:+|nuORF ENST00000460499.5_1_2:27659579-27664676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2461853027344 2 438.245275 874.475997 0.75356 0.00033024 1.265 0.00055438 2.0186 0.00088462 438.24593977701556 48.113 0.36381 42.879 42.641 43.005 -5.2339 29 21 2 0 0 0 0.011968 1 29871 29871 74.929 16.25 1 12757000 64658 3097 43051 44018 75470 75470 0.033737921435204044 TLNSFNTGER 10 Unmodified _TLNSFNTGER_ 0 0 0 ENST00000495294.1_1_X:2825959-2847358:-|nuORF ENST00000495294.1_1_X:2825959-2847358:-|nuORF ENST00000495294.1_1_X:2825959-2847358:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 380.2180786132812 3 380.18776 1137.54145 NaN NaN NaN NaN NaN NaN NaN 44.258 1 39.406 38.906 39.906 -4.852 0 0 0 0.88176 1 26996 26996 5.0475 0 1 64659 14351 43052 44019 75471 75471 -0.02181838401429559 TLNSWRKF 8 Unmodified _TLNSWRKF_ 0 0 0 ENSG00000157240|ENST00000287934|FZD1 ENSG00000157240|ENST00000287934|FZD1 ENSG00000157240|ENST00000287934|FZD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2513427734375 2 526.287808 1050.56106 0.3961 0.00020846 -2.7506 -0.0014476 -2.3545 -0.0012391 526.2855819578798 72.215 0.45865 72.215 71.904 72.362 0 41 20 3 0 0 0 8.7369 1 40146 40146 8.5933 1.304 1 1789000 64660 6509 43053 44020 75472 75472 0.03780582399986088 TLNVWPLYI 9 Unmodified _TLNVWPLYI_ 0 0 0 nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47;nc|ENSG00000170242|Q96K76-3|USP47;ENST00000305481.10_1_11:11973309-11977719:+|nuORF nc|ENSG00000170242|Q96K76-2|USP47 nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8155517578125 2 559.815867 1117.61718 0.69365 0.00038832 0.10346 5.7917E-05 0.79711 0.00044623 559.8157020517048 84.844 0.42075 84.343 84.135 84.556 -0.50055 36 17 3 0 0 0 0.23158 1 46485 46485 20.454 4.6064 1 3424700 64661 7962 43054 44021 75473 75473 0.06307790516780187 TLNWEWSL 8 Unmodified _TLNWEWSL_ 0 0 0 REV__nc|ENSG00000141522|P52565-2|ARHGDIA REV__nc|ENSG00000141522|P52565-2|ARHGDIA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.75927734375 2 524.758549 1047.50255 NaN NaN NaN NaN NaN NaN NaN 89.261 1 88.757 88.257 89.257 -0.50423 0 0 0 0.97348 1 48806 48806 5.7604 0 1 + 64662 20541 43055 44022 75474 75474 -0.019305189651504406 TLNYRKRI 8 Unmodified _TLNYRKRI_ 0 0 0 REV__ENSG00000166340|ENST00000299427|TPP1 REV__ENSG00000166340|ENST00000299427|TPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3236083984375 2 532.322183 1062.62981 0.51008 0.00027153 2.4081 0.0012819 2.9182 0.0015534 532.3233108267682 72.051 0.31545 71.575 71.415 71.73 -0.4761 27 12 3 0 0 0 0.80143 1 39504 39504 5.7604 0 1 2632300 + 64663 22105 43056 44023 75475 75475 0.101002466996988 TLPARNKLL 9 Unmodified _TLPARNKLL_ 0 0 0 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 nc|ENSG00000108509|O94983-6|CAMTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3267211914062 2 513.326934 1024.63931 0.067933 3.4872E-05 -0.90408 -0.00046409 -0.83615 -0.00042922 513.3263469522558 31.126 0.18625 31.156 31.037 31.223 0.030104 12 7 2 0 0 0 0.16226 1 16322 16322 26.884 7.6267 1 1341100 64664 16110 43057 44024 75476 75476 0.12798014985219197 TLPDLTPLFI 10 Unmodified _TLPDLTPLFI_ 0 0 0 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 ENSG00000133028|ENST00000255390|SCO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2225952148438 3 377.221631 1128.64306 1.6903 0.00063761 2.7286 0.0010293 4.4189 0.0016669 377.22197087060374 21.648 0.34221 18.914 18.711 19.054 -2.7348 52 22 3 0 0 0 0.66569 1 11548 11548 3.5871 0 1 5768400 64665 4479 43058 44025 75477 75477 0.083886399684161 TLPEPPAA 8 Unmodified _TLPEPPAA_ 0 0 0 nc|ENSG00000215117|Q9Y4M8|LINC00588 nc|ENSG00000215117|Q9Y4M8|LINC00588 nc|ENSG00000215117|Q9Y4M8|LINC00588 MSMS AL20221201_MKP_PDAC_01 4 398.2171325683594 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 36.663 1 32.38 31.88 32.88 -4.2835 0 0 0 0.95607 1 21430 21430 9.3474 3.587 1 64666 16545 43059 44026 75478 75478 0.011987355690393997 TLPESGTL 8 Unmodified _TLPESGTL_ 0 0 0 REV__ENSG00000143816|ENST00000272164|WNT9A REV__ENSG00000143816|ENST00000272164|WNT9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2188110351562 2 409.218726 816.422899 NaN NaN NaN NaN NaN NaN NaN 24.625 1 24.625 24.125 25.125 0 0 0 0 0.77249 1 12591 12591 24.674 0 1 + 64667 20674 43060 44027 75479 75479 0.0073441436087478 TLPFIESMKQ 10 Unmodified _TLPFIESMKQ_ 0 0 0 REV__ENSG00000075856|ENST00000546815|SART3 REV__ENSG00000075856|ENST00000546815|SART3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.3167724609375 2 597.315374 1192.6162 NaN NaN NaN NaN NaN NaN NaN 22.039 1 22.062 21.562 22.562 0.022896 0 0 0 0.99091 1 11201 11201 1.6526 0.17072 1 + 64668 17578 43061 44028 75480 75480 0.02759208085581122 TLPGSHIPEE 10 Unmodified _TLPGSHIPEE_ 0 0 0 nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 nc|ENSG00000116127|Q8TCU4-2|ALMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7701416015625 2 540.272021 1078.52949 0.74651 0.00040332 -3.5687 -0.001928 -2.8221 -0.0015247 540.2705875026309 59.431 0.13948 53.317 53.255 53.394 -6.1147 10 7 2 0 0 0 0.22327 1 38189 38189 13.906 3.8321 1 12943000 64669 3194 43062 44029 75481 75481 -0.006634551446268233 TLPHGHQL 8 Unmodified _TLPHGHQL_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3;nc|ENSG00000137936|O75815-2|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7461547851562 2 451.745776 901.477 0.7243 0.0003272 -0.33895 -0.00015312 0.38534 0.00017408 451.74564880916256 49.923 0.43906 49.53 49.313 49.753 -0.3923 59 21 4 0 0 0 0.5953 1 26795 26795 26.341 3.1929 1 36785000 64670 4988 43063 44030 75482 75482 0.022320513030990696 TLPNVGLTL 9 Unmodified _TLPNVGLTL_ 0 0 0 REV__nc|ENSG00000006695|Q12887-2|COX10 REV__nc|ENSG00000006695|Q12887-2|COX10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7763671875 2 464.279118 926.543683 0.84251 0.00039116 -0.34608 -0.00016068 0.49643 0.00023048 464.279159183978 36.785 0.60817 32.501 32.111 32.719 -4.2835 72 37 3 0 0 0 0.10247 1 21327 21327 32.786 2.5609 1 41961000 + 64671 16995 43064 44031 75483 75483 0.07747242074333371 TLPPPPYPHL 10 Unmodified _TLPPPPYPHL_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7947387695312 2 566.313492 1130.61243 0.47584 0.00026947 2.2086 0.0012508 2.6845 0.0015202 566.3147632876855 59.256 0.30268 58.765 58.665 58.968 -0.49079 18 13 2 0 0 0 0.22891 1 32217 32217 7.9102 0.62092 1 1020900 64672 2747 43065 44032 75484 75484 0.05234906374039383 TLPQVKCTN 9 Unmodified _TLPQVKCTN_ 0 0 0 REV__nc|ENSG00000083223|Q5VYS8-4|TUT7 REV__nc|ENSG00000083223|Q5VYS8-4|TUT7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7836608886719 2 502.265684 1002.51682 0.4014 0.00020161 -1.2303 -0.00061796 -0.82894 -0.00041635 502.26482356151826 38.619 0.35597 34.251 34.074 34.43 -4.3689 37 22 2 0 0 0 0.15672 1 22870 22870 26.884 3.7352 1 24419000 + 64673 17715 43066 44033 75485 75485 0.01565810191482342 TLPREGEYVKI 11 Unmodified _TLPREGEYVKI_ 0 0 0 REV__ENSG00000044574|ENST00000324460|HSPA5 REV__ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.8510131835938 2 652.864077 1303.7136 -0.27779 -0.00018136 -1.4487 -0.00094582 -1.7265 -0.0011272 653.3633862729905 101.61 0.087021 101.56 101.52 101.61 -0.045853 4 2 2 0 0 0 0.58219 1 56428 56428 12.241 4.9514 1 664190 + 64674 17217 43067 44034 75486 75486 0.07389313286080323 TLPRLTEQGF 10 Unmodified _TLPRLTEQGF_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 580.7803955078125 2 581.316763 1160.61897 1.2514 0.00072743 -3.7838 -0.0021996 -2.5324 -0.0014721 581.3133071298289 95.942 0.18091 89.766 89.696 89.877 -6.1757 14 10 2 0 0 0 0.22149 1 63536 63536 14.838 2.3067 1 4274500 64675 10130 43068 44035 75487 75487 0.04508799534755781 TLPRSSYVF 9 Unmodified _TLPRSSYVF_ 0 0 0 nc|ENSG00000151612|Q17R98-3|ZNF827;nc|ENSG00000151612|Q17R98-2|ZNF827;ENSG00000151612|ENST00000508784|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 nc|ENSG00000151612|Q17R98-3|ZNF827 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2884521484375 2 535.287474 1068.5604 0.52829 0.00028279 0.59231 0.00031706 1.1206 0.00059984 535.2878645099694 49.307 0.36567 49.263 49.07 49.436 -0.04369 37 17 3 0 0 0 0.06294 1 26589 26589 41.84 20.093 1 5057000 64676 6127 43069 44036 75488 75488 0.028857429602794582 TLPRTETTV 9 Unmodified _TLPRTETTV_ 0 0 0 REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF REV__ENST00000532305.1_1_11:9546777-9549157:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7754211425781 2 509.282389 1016.55022 0.4268 0.00021736 -1.4314 -0.00072899 -1.0046 -0.00051163 509.7841233761127 82.055 0.2709 75.879 75.73 76.001 -6.1757 24 15 2 0 0 0 0.18521 1 53914 53914 7.2892 0 1 18352000 + 64677 22126 43070 44037 75489 75489 0.042611352350377274 TLPSIWDSP 9 Unmodified _TLPSIWDSP_ 0 0 0 ENSG00000120697|ENST00000239891|ALG5;nc|ENSG00000120697|Q9Y673-2|ALG5;ENST00000496689.1_1_13:37569562-37569700:-|nuORF ENSG00000120697|ENST00000239891|ALG5 ENSG00000120697|ENST00000239891|ALG5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7846069335938 2 508.258382 1014.50221 0.03843 1.9533E-05 1.6028 0.00081466 1.6413 0.00083419 508.25914459715824 65.13 0.27843 64.646 64.47 64.749 -0.48428 29 12 3 0 0 0 0.16785 1 35498 35498 16.942 0 1 1927400 64678 3532 43071 44038 75490 75490 -0.004459386850044211 TLPTQAGRG 9 Unmodified _TLPTQAGRG_ 0 0 0 REV__ENST00000551915.5_1_12:83081037-83081439:+|nuORF REV__ENST00000551915.5_1_12:83081037-83081439:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2698059082031 2 450.748516 899.482479 0.014131 6.3694E-06 0.051094 2.303E-05 0.065224 2.94E-05 450.748691141991 23.322 0.30056 23.322 23.126 23.427 0 25 14 2 0 0 0 0.20139 1 11880 11880 10.824 1.4765 1 758040 + 64679 28721 43072 44039 75491 75491 0.028717300948983393 TLPVQPAEL 9 Unmodified _TLPVQPAEL_ 0 0 0 ENSG00000168255|ENST00000513506|POLR2J3;nc|ENSG00000228049|Q9GZM3-2|POLR2J2;ENST00000504157.5_1_7:102207439-102208488:-|nuORF;ENST00000608621.5_1_7:102202646-102208488:-|nuORF;ENST00000476151.5_1_7:102281096-102307568:-|nuORF ENSG00000168255|ENST00000513506|POLR2J3 ENSG00000168255|ENST00000513506|POLR2J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2763671875 2 484.276575 966.538597 0.66886 0.00032391 0.24713 0.00011968 0.91598 0.00044359 484.2763460647168 60.162 0.34278 60.162 60.003 60.345 0 21 14 2 0 0 0 0.39863 1 33602 33602 12.532 0 1 837790 64680 7734 43073 44040 75492 75492 0.05398938211715176 TLPWGGAR 8 Unmodified _TLPWGGAR_ 0 0 0 REV__ENST00000514705.5_1_5:176074565-176079944:+|nuORF REV__ENST00000514705.5_1_5:176074565-176079944:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.2355651855469 2 429.235045 856.455536 0.99877 0.00042871 0.44074 0.00018918 1.4395 0.00061789 429.23516543013733 64.306 0.4766 64.296 63.9 64.377 -0.010529 62 23 3 0 0 0 0.80722 1 35061 35061 2.3027 0 1 13755000 + 64681 28198 43074 44041 75493 75493 0.02156666274379404 TLQANREDSM 10 Unmodified _TLQANREDSM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7697143554688 2 582.769319 1163.52409 0.92621 0.00053976 -0.11947 -6.9621E-05 0.80674 0.00047014 582.7691830781138 43.284 0.29683 43.268 43.124 43.421 -0.015671 32 13 3 0 0 0 0.46514 1 23269 23269 18.146 0 1 13583000 64682 1444 43075 44042 75494 75494 -0.051135019987668784 TLQANREDSM 10 Unmodified _TLQANREDSM_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7694091796875 2 582.769319 1163.52409 1.1937 0.00069564 -0.24261 -0.00014138 0.95107 0.00055426 582.7691856706458 46.181 0.6503 46.148 45.879 46.529 -0.03297 65 30 3 0 0 0 0.46514 1 24854 24854 18.146 0 1 5196600 64683 1444 43075 44042 75495 75495 -0.051135019987668784 TLQDYSEHCK 10 Unmodified _TLQDYSEHCK_ 0 0 0 ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF ENSG00000115233|ENST00000409682|PSMD14 ENSG00000115233|ENST00000409682|PSMD14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2723388671875 2 612.271695 1222.52884 0.59827 0.0003663 1.1175 0.0006842 1.7157 0.0010505 612.2724005669729 83.83 0.34026 83.33 83.123 83.463 -0.49961 31 13 3 0 0 0 0.66569 1 45857 45857 6.7232 2.7788 1 2248300 64684 3100 43076 44043 75496 75496 -0.07352617855985955 TLQEKIHRL 9 Unmodified _TLQEKIHRL_ 0 0 0 nc|ENSG00000183137|Q8IYX8-2|CEP57L1;ENSG00000183137|ENST00000517392|CEP57L1 nc|ENSG00000183137|Q8IYX8-2|CEP57L1 nc|ENSG00000183137|Q8IYX8-2|CEP57L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.8814086914062 3 379.89614 1136.66659 0.95827 0.00036404 -0.61924 -0.00023525 0.33903 0.0001288 379.8958429314737 26.559 0.22987 23.607 23.502 23.732 -2.9511 15 11 2 0 0 0 0.19277 1 14640 14640 16.566 7.0219 1 4527700 64685 9121 43077 44044 75497 75497 0.10372498525589435 TLQEKSKEF 9 Unmodified _TLQEKSKEF_ 0 0 0 REV__ENSG00000158874|ENST00000367990|APOA2 REV__ENSG00000158874|ENST00000367990|APOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.2960815429688 2 555.295496 1108.57644 0.65462 0.00036351 0.333 0.00018491 0.98762 0.00054842 555.2954321680177 47.883 0.18929 47.844 47.7 47.89 -0.038643 14 8 2 0 0 0 0.54444 1 25810 25810 4.756 0 1 1572900 + 64686 21449 43078 44045 75498 75498 0.026494044065202615 TLQEQIEAI 9 Unmodified _TLQEQIEAI_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7823486328125 2 522.782222 1043.54989 0.47784 0.00024981 1.3115 0.0006856 1.7893 0.00093541 522.782572030062 58.499 0.38359 58.499 58.34 58.723 0 29 15 3 0 0 0 0.039985 1 32593 32593 49.933 11.959 1 2376500 64687 1734 43079 44046 75499 75499 0.029857155152058112 TLQEVHFLL 9 Unmodified _TLQEVHFLL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3111572265625 2 550.310949 1098.60735 0.47602 0.00026196 0.29509 0.00016239 0.7711 0.00042435 550.3110145697409 75.905 0.6027 75.428 75.235 75.837 -0.47714 73 25 4 0 0 0 0.0089732 1 41510 41510 86.332 7.6038 1 22051000 64688 8296;16388 43080 44047 75500 75500 0.06198602511426543 TLQEVHFLL 9 Unmodified _TLQEVHFLL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3115234375 2 550.310949 1098.60735 0.09373 5.1581E-05 2.0612 0.0011343 2.1549 0.0011859 550.3118886105337 93.119 0.72865 86.944 86.74 87.469 -6.1757 95 50 2 0 0 0 0.011968 1 61675 61675 74.929 6.8483 1 59202000 64689 8296;16388 43080 44047 75501 75501 0.06198602511426543 TLQGDMRHMTL 11 Unmodified _TLQGDMRHMTL_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8819885253906 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 72.129 1 72.129 71.629 72.629 0 0 0 0 0.86932 1 40166 40166 4.4062 0.81909 1 64690 5519 43081 44048 75502 75502 -0.016720166743880327 TLQGIHPKNI 10 Unmodified _TLQGIHPKNI_ 0 0 0 ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1 ENST00000509101.1_1_4:74735175-74735707:+|nuORF ENST00000509101.1_1_4:74735175-74735707:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8301391601562 2 560.827298 1119.64004 0.99641 0.00055882 -0.90928 -0.00050995 0.087133 4.8866E-05 560.8267825401356 71.875 0.47712 71.914 71.557 72.035 0.039024 50 22 3 0 0 0 0.16361 1 39581 39581 38.176 2.0485 1 4042500 64691 7060 43082 44049 75503 75503 0.08500809634256257 TLQGLEIEL 9 Unmodified _TLQGLEIEL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__P19001;CON__A2A4G1 ENSG00000171345|ENST00000361566|KRT19;CON__P19001;CON__A2A4G1 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2870483398438 2 508.28714 1014.55973 0.37676 0.0001915 -0.49905 -0.00025366 -0.12229 -6.2156E-05 508.28685858668064 83.141 0.40192 83.141 82.938 83.34 0 66 23 3 0 0 0 0.0090948 2 46133 46036;46133 85.272 7.1226 1 7804400 + 64692 167;173;135 43083 44050 75504;75505 75505 0.05302903520566815 TLQGLEIEL 9 Unmodified _TLQGLEIEL_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;CON__P19001;CON__A2A4G1 ENSG00000171345|ENST00000361566|KRT19;CON__P19001;CON__A2A4G1 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.286865234375 2 508.28714 1014.55973 0.6724 0.00034177 0.025469 1.2946E-05 0.69787 0.00035472 508.2870208511489 91.319 0.50782 85.143 84.823 85.331 -6.1757 69 28 3 0 0 0 0.0082485 2 60361 60235;60361 96.285 14.672 1 20800000 + 64693 167;173;135 43083 44050 75506;75507 75507 0.05302903520566815 TLQNWKFW 8 Unmodified _TLQNWKFW_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8629760742188 3 374.862548 1121.56581 0.82964 0.000311 0.24425 9.1561E-05 1.0739 0.00040256 374.86246226033825 50.107 0.24236 49.715 49.588 49.83 -0.3923 27 11 3 0 0 0 0.80232 1 26992 26992 3.5965 0.60125 1 2192000 64694 8538 43084 44051 75508 75508 0.009894665427509608 TLQPEEAILTL 11 Unmodified _TLQPEEAILTL_ 0 0 0 ENST00000338963.6_1_15:56208884-56209049:-|nuORF ENST00000338963.6_1_15:56208884-56209049:-|nuORF ENST00000338963.6_1_15:56208884-56209049:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.3460083007812 2 614.345186 1226.67582 NaN NaN NaN NaN NaN NaN NaN 83.192 1 83.255 82.755 83.755 0.063171 0 0 0 0.93893 1 46023 46023 3.2813 0 1 64695 11944 43085 44052 75509 75509 0.07154802300624397 TLQPPAPQ 8 Unmodified _TLQPPAPQ_ 0 0 0 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 ENSG00000101544|ENST00000262198|ADNP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.4603881835938 1 851.462144 850.454868 0.82673 0.00070393 -0.24711 -0.0002104 0.57962 0.00049352 851.4620308113068 49.763 0.30716 44.224 44.05 44.357 -5.5391 32 19 2 0 0 0 0.12393 1 31046 31046 92.822 21.689 1 21284000 64696 1975 43086 44053 75510 75510 0.023658268346594014 TLQSIVHQV 9 Unmodified _TLQSIVHQV_ 0 0 0 ENST00000436367.5_1_6:16658120-16761659:-|nuORF;ENST00000479680.1_1_6:16753430-16761659:-|nuORF;ENST00000467008.5_1_6:16739996-16761659:-|nuORF ENST00000436367.5_1_6:16658120-16761659:-|nuORF ENST00000436367.5_1_6:16658120-16761659:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.7584838867188 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 59.231 1 53.156 52.656 53.656 -6.0745 0 0 0 0.46232 1 38011 38011 17.113 0.1706 1 64697 13334 43087 44054 75511 75511 0.0604514533456495 TLQVKKKKKK 10 Unmodified _TLQVKKKKKK_ 0 0 0 REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.28662109375 3 410.286969 1227.83908 NaN NaN NaN NaN NaN NaN NaN 106.6 1 100.42 99.921 100.92 -6.1757 0 0 0 1.0061 1 71345 71345 0 0 1 + 64698 28404 43088 44055 75512 75512 0.234270699329727 TLQWWSWQMCL 11 Unmodified _TLQWWSWQMCL_ 0 0 0 ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.5618591308594 3 494.561664 1480.66316 0.60723 0.00030031 -0.38528 -0.00019054 0.22195 0.00010977 494.8958563697411 68.445 0.27135 67.965 67.825 68.096 -0.48071 28 11 3 0 0 0 0.73114 1 37400 37400 1.3296 0.82369 1 2474600 64699 14417 43089 44056 75513 75513 -0.057942556349189545 TLQWWSWQMCL 11 Unmodified _TLQWWSWQMCL_ 0 0 0 ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF ENST00000498256.1_1_8:29489773-29490157:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 494.561664 1480.66316 0.56786 0.00028084 0.12039 5.9542E-05 0.68825 0.00034038 494.8961214378644 67.987 0.24931 68.013 67.815 68.064 0.025146 0.023918 0.0005396 NaN 1.3296 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1855900 64700 14417 43089 44056 -0.057942556349189545 TLQYLTVSCL 10 Unmodified _TLQYLTVSCL_ 0 0 0 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 ENSG00000168282|ENST00000305386|MGAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3106079101562 2 570.8021 1139.58965 2.5696 0.0014667 -1.2374 -0.00070631 1.3322 0.00076044 570.7990992588664 96.939 0.45061 96.932 96.587 97.038 -0.007019 32 16 3 0 0 0 0.20962 1 53756 53756 32.786 2.1491 1 6986200 64701 7741 43090 44057 75514 75514 0.025435191942506208 TLQYPRLA 8 Unmodified _TLQYPRLA_ 0 0 0 REV__nc|ENSG00000105143|P48664-2|SLC1A6 REV__nc|ENSG00000105143|P48664-2|SLC1A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2749938964844 2 481.276909 960.539266 NaN NaN NaN NaN NaN NaN NaN 41.065 1 40.761 40.261 41.261 -0.30304 0 0 0 0.97348 1 21735 21735 5.7604 0.52976 1 + 64702 18404 43091 44058 75515 75515 0.05741777651405755 TLRCPPLML 9 Unmodified _TLRCPPLML_ 0 0 0 REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF REV__ENST00000489256.5_1_2:242051902-242052094:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2904052734375 2 522.290648 1042.56674 1.2075 0.00063065 1.0247 0.00053521 2.2322 0.0011659 522.2910574792948 95.158 0.76157 88.983 88.573 89.334 -6.1757 78 42 2 0 0 0 0.047196 1 62844 62844 46.021 2.1627 1 16953000 + 64703 27857 43092 44059 75516 75516 0.04716221595776915 TLRDIQRML 9 Unmodified _TLRDIQRML_ 0 0 0 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5538330078125 3 382.553497 1144.63866 0.59946 0.00022933 0.52879 0.00020229 1.1283 0.00043162 382.5538170220473 15.467 0.31419 12.94 12.799 13.113 -2.5273 113 73 3 0 0 0 0.45045 1 7869 7869 6.6304 1.2277 1 5001800 64704 3195 43093 44060 75517 75517 0.0721285227386943 TLREAEDL 8 Unmodified _TLREAEDL_ 0 0 0 REV__ENSG00000160801|ENST00000449590|PTH1R REV__ENSG00000160801|ENST00000449590|PTH1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7455749511719 2 473.745639 945.476725 NaN NaN NaN NaN NaN NaN NaN 19.985 1 20.013 19.513 20.513 0.028357 0 0 0 0.97444 1 10103 10103 0.79363 0 1 + 64705 21568 43094 44061 75518 75518 0.001805867925554594 TLREDETMF 9 Unmodified _TLREDETMF_ 0 0 0 REV__ENSG00000147003|ENST00000380342|CLTRN REV__ENSG00000147003|ENST00000380342|CLTRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.5684204101562 3 381.177985 1140.51212 0.49615 0.00018912 2.1766 0.00082967 2.6727 0.0010188 381.17863842493 52.063 0.2391 51.629 51.55 51.789 -0.43367 18 11 2 0 0 0 0.21367 1 28067 28067 2.7352 0.45242 1 1640400 + 64706 20858 43095 44062 75519 75519 -0.052511187419213456 TLREIVIGV 9 Unmodified _TLREIVIGV_ 0 0 0 ENST00000585403.5_1_17:40721871-40723618:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX;nc|ENSG00000108788|Q9UH92|MLX ENST00000585403.5_1_17:40721871-40723618:+|nuORF ENST00000585403.5_1_17:40721871-40723618:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2606506347656 2 500.313492 998.612431 0.38141 0.00019082 0.24955 0.00012486 0.63096 0.00031568 500.31354540647516 64.543 0.23752 64.058 63.887 64.125 -0.48512 15 10 2 0 0 0 0.21834 1 35129 35129 1.8442 0.36234 1 810540 64707 2605 43096 44063 75520 75520 0.11306906374034043 TLRGTAHF 8 Unmodified _TLRGTAHF_ 0 0 0 CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant CLSTN2|p.D641A|1|0.18|ENSG00000158258|chr3:140558738-140558738|A/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7459411621094 2 451.745776 901.477 0.8757 0.00039559 -0.12314 -5.5628E-05 0.75256 0.00033997 451.7457934088808 54.602 0.60188 48.737 48.485 49.087 -5.8653 87 37 3 0 0 0 0.46494 3 34526 34526;34660;34798 38.151 13.477 1 119710000 64708 129 43097 44064 75521;75522;75523 75521 0.02232051303087701 TLRKKDETIQ 10 Unmodified _TLRKKDETIQ_ 0 0 0 ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML ENSG00000203668|ENST00000366553|CHML MSMS AL20221201_MKP_PDAC_01 4 411.2370910644531 3 411.238343 1230.6932 NaN NaN NaN NaN NaN NaN NaN 93.718 1 87.543 87.043 88.043 -6.1757 0 0 0 0.83226 1 62048 62048 10.899 5.4962 1 64709 10218 43098 44065 75524 75524 0.08708142626278459 TLRLDVEAL 9 Unmodified _TLRLDVEAL_ 0 0 0 ENSG00000113262|ENST00000517717|GRM6 ENSG00000113262|ENST00000517717|GRM6 ENSG00000113262|ENST00000517717|GRM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.3001098632812 2 515.300581 1028.58661 -0.16628 -8.5685E-05 -0.21958 -0.00011315 -0.38586 -0.00019883 515.3004865159976 56.192 0.41796 56.192 56.007 56.424 0 45 19 3 0 0 0 0.16226 1 31308 31308 26.884 2.8631 1 23519000 64710 2950 43099 44066 75525 75525 0.07346012131756652 TLRLKDNL 8 Unmodified _TLRLKDNL_ 0 0 0 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 REV__nc|ENSG00000175505|Q9UBD9-2|CLCF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7944030761719 2 486.795466 971.57638 NaN NaN NaN NaN NaN NaN NaN 92.412 1 91.931 91.431 92.431 -0.48092 0 0 0 0.97444 1 50509 50509 0.79363 0 1 + 64711 22875 43100 44067 75526 75526 0.0894544919716509 TLRLLLDGDV 10 Unmodified _TLRLLLDGDV_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.2201538085938 3 372.220401 1113.63937 NaN NaN NaN NaN NaN NaN NaN 45.625 1 45.301 44.801 45.801 -0.32425 0 0 0 0.97302 1 24383 24383 1.7423 0 1 + 64712 16943 43101 44068 75527 75527 0.08709970194558991 TLRLMPHLA 9 Unmodified _TLRLMPHLA_ 0 0 0 ENSG00000153093|ENST00000439055|ACOXL;nc|ENSG00000153093|Q9NUZ1-2|ACOXL;nc|ENSG00000153093|Q9NUZ1|ACOXL ENSG00000153093|ENST00000439055|ACOXL ENSG00000153093|ENST00000439055|ACOXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2080078125 3 351.20755 1050.60082 0.75842 0.00026636 0.61154 0.00021478 1.37 0.00048114 351.2078078435678 47.236 0.20101 47.202 47.123 47.324 -0.033417 14 9 2 0 0 0 0.59218 1 25494 25494 2.4985 1.5362 1 1167800 64713 6237 43102 44069 75528 75528 0.07754386079068354 TLRMLCFWCQF 11 Unmodified _TLRMLCFWCQF_ 0 0 0 REV__ENST00000606459.1_1_5:8460790-8460934:+|nuORF REV__ENST00000606459.1_1_5:8460790-8460934:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2281494140625 3 483.227628 1446.66105 0.58896 0.0002846 1.8561 0.00089691 2.445 0.0011815 483.22868588688976 53.624 0.19584 53.172 53.065 53.261 -0.45173 20 9 3 0 0 0 0.71036 1 29017 29017 1.3296 0 1 2309900 + 64714 29298 43103 44070 75529 75529 -0.04441007644390993 TLRNWASFF 9 Unmodified _TLRNWASFF_ 0 0 0 nc|ENSG00000182366|P0C7U9|FAM87A nc|ENSG00000182366|P0C7U9|FAM87A nc|ENSG00000182366|P0C7U9|FAM87A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.29296875 2 571.293091 1140.57163 0.29174 0.00016667 0.98651 0.00056359 1.2783 0.00073026 571.2934977940438 78.246 0.45291 78.298 78.037 78.49 0.052452 44 18 3 0 0 0 0.25681 1 43177 43177 19.257 0 1 9595000 64715 16437 43104 44071 75530 75530 0.0069656505440889305 TLRQNLEQL 9 Unmodified _TLRQNLEQL_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-4|NIN REV__nc|ENSG00000100503|Q8N4C6-4|NIN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.7603149414062 2 557.814387 1113.61422 0.3983 0.00022218 1.3584 0.00075773 1.7567 0.00097991 557.8145696265391 65.477 0.13741 59.301 59.207 59.344 -6.1757 11 7 2 0 0 0 0.18482 1 42474 42474 8.7454 0 1 11566000 + 64716 18075 43105 44072 75531 75531 0.061959153919815435 TLRRLRRVRRR 11 Unmodified _TLRRLRRVRRR_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3394775390625 3 513.341464 1537.00256 -0.36311 -0.0001864 -3.2616 -0.0016743 -3.6247 -0.0018607 513.6732794625661 104.26 0.10313 104.21 104.13 104.24 -0.048737 9 5 2 0 0 0 0.7453 1 57877 57877 0 0 1 1854300 + 64717 23805 43106 44073 75532 75532 0.255541055472122 TLRRRRVV 8 Unmodified _TLRRRRVV_ 0 0 0 ENST00000508688.5_1_17:46627722-46628356:+|nuORF ENST00000508688.5_1_17:46627722-46628356:+|nuORF ENST00000508688.5_1_17:46627722-46628356:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3496704101562 2 528.349066 1054.68358 -0.61841 -0.00032674 3.6899 0.0019495 3.0714 0.0016228 528.3511580389638 103.78 0.13332 103.73 103.64 103.78 -0.048737 9 5 2 0 0 0 0.8104 1 57636 57636 0.69038 0 1 2869300 64718 14563 43107 44074 75533 75533 0.15842463922081151 TLRRTGQY 8 Unmodified _TLRRTGQY_ 0 0 0 ENSG00000181240|ENST00000321510|SLC25A41;ENSG00000125648|ENST00000301454|SLC25A23;nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;nc|ENSG00000125648|Q9BV35-3|SLC25A23 ENSG00000181240|ENST00000321510|SLC25A41;ENSG00000125648|ENST00000301454|SLC25A23 ENSG00000125648|ENST00000301454|SLC25A23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7761535644531 2 497.775065 993.535577 0.99586 0.00049571 2.6615 0.0013248 3.6574 0.0018206 497.7764394402077 92.4 0.37807 86.224 85.986 86.364 -6.1757 34 22 2 0 0 0 0.75262 1 61037 61037 12.532 1.7076 1 11287000 64719 3866;8959 43108 44075 75534 75534 0.03855107877575392 TLSDIFLLF 9 Unmodified _TLSDIFLLF_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8037109375 2 534.802426 1067.5903 1.1074 0.00059226 0.91027 0.00048681 2.0177 0.0010791 534.8023380039218 102.57 0.085251 96.393 96.339 96.424 -6.1757 22 10 3 0 0 0 0.047788 1 68818 68818 60.39 6.814 1 16593000 64720 6115 43109 44076 75535 75535 0.05920681905604397 TLSDIKALI 9 Unmodified _TLSDIKALI_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.3006896972656 2 487.30005 972.585547 NaN NaN NaN NaN NaN NaN NaN 67.062 1 66.579 66.079 67.079 -0.48323 0 0 0 0.43483 1 36631 36631 18.146 4.2403 1 64721 4211 43110 44077 75536 75536 0.09815797762848888 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ TLSDIM(1)VSL TLSDIM(51)VSL 0 0 1 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7608032226562 2 497.759901 993.505248 0.38214 0.00019022 1.6517 0.00082213 2.0338 0.0010123 497.76061867747234 69.002 0.41142 69.002 68.74 69.152 0 34 17 2 0 0 0 0.038285 1 38496 38496 50.855 27.707 1 2333300 64722 4878 43111 44078 75537 75537 886 0.008235683775069447 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ TLSDIM(1)VSL TLSDIM(51)VSL 0 0 1 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7604064941406 2 497.759901 993.505248 -0.11153 -5.5515E-05 1.5747 0.00078382 1.4632 0.00072831 497.76057857982346 69.511 0.28123 69.032 68.9 69.182 -0.47903 19 11 2 0 0 0 0.038285 1 38006 38006 50.855 27.707 1 1797300 64723 4878 43111 44078 75538 75538 886 0.008235683775069447 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ TLSDIM(1)VSL TLSDIM(51)VSL 0 0 1 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MSMS AL20221201_MKP_PDAC_01 4 498.2168884277344 2 497.759901 993.505248 NaN NaN NaN NaN NaN NaN NaN 77.057 1 70.881 70.381 71.381 -6.1757 0 0 0 0.071041 1 50398 50398 50.855 20.63 1 64724 4878 43111 44078 75539 75539 886 0.008235683775069447 TLSDIMVSL 9 Oxidation (M) _TLSDIM(Oxidation (M))VSL_ TLSDIM(1)VSL TLSDIM(42)VSL 0 0 1 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MSMS AL20221201_MKP_PDAC_01 4 497.7594909667969 2 497.759901 993.505248 NaN NaN NaN NaN NaN NaN NaN 77.146 1 70.97 70.47 71.47 -6.1757 0 0 0 0.10545 1 50454 50454 42.095 18.946 1 64725 4878 43111 44078 75540 75540 886 0.008235683775069447 TLSDIMVSL 9 Unmodified _TLSDIMVSL_ 0 0 0 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7621765136719 2 489.762443 977.510333 0.96278 0.00047153 0.027734 1.3583E-05 0.99052 0.00048512 489.7623645360823 93.923 0.69058 87.748 87.303 87.993 -6.1757 54 40 2 0 0 0 0.087258 1 62167 62167 36.044 7.5574 1 9133200 64726 4878 43111 44079 75541 75541 0.020678722401157756 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;ENST00000482926.1_1_6:42018279-42030992:+|nuORF nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5608520507812 1 960.561189 959.553913 0.039452 3.7896E-05 -0.59859 -0.00057498 -0.55913 -0.00053708 960.5614730516792 81.988 0.21312 81.988 81.871 82.084 0 17 12 2 0 0 0 0.14602 1 45458 45458 28.487 0 1 610750 64727 16219 43112 44080 75542 75542 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;ENST00000482926.1_1_6:42018279-42030992:+|nuORF nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7846069335938 2 480.784233 959.553913 0.26717 0.00012845 0.7671 0.00036881 1.0343 0.00049726 480.78449086431397 82.002 0.32555 82.002 81.841 82.167 0 32 18 3 0 0 0 0.30562 2 45460 45460;45557 16.942 4.4107 1 766120 64728 16219 43112 44080 75543;75544 75543 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;ENST00000482926.1_1_6:42018279-42030992:+|nuORF nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7850952148438 2 480.784233 959.553913 0.71944 0.00034589 0.077174 3.7104E-05 0.79661 0.000383 480.78417293106514 82.495 0.38939 81.999 81.767 82.156 -0.4952 34 15 3 0 0 0 0.06187 2 45110 45110;45215 42.095 9.9414 1 1726900 64729 16219 43112 44080 75545;75546 75545 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;ENST00000482926.1_1_6:42018279-42030992:+|nuORF nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5613403320312 1 960.561189 959.553913 0.51382 0.00049356 0.10681 0.0001026 0.62064 0.00059616 960.561587964761 82.467 0.31134 81.972 81.819 82.13 -0.4952 17 12 2 0 0 0 0.070838 1 45139 45139 39.957 5.8549 1 673570 64730 16219 43112 44080 75547 75547 0.07251805008900192 TLSDIVVTL 9 Unmodified _TLSDIVVTL_ 0 0 0 nc|ENSG00000137413|Q7Z7C8-4|TAF8;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;ENST00000482926.1_1_6:42018279-42030992:+|nuORF nc|ENSG00000137413|Q7Z7C8-4|TAF8 nc|ENSG00000137413|Q7Z7C8-4|TAF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.783935546875 2 480.784233 959.553913 1.3612 0.00065444 0.36595 0.00017594 1.7271 0.00083038 480.783832901423 90.596 0.47353 84.42 84.186 84.659 -6.1757 52 27 2 0 0 0 0.022193 1 59922 59922 61.357 6.5839 1 17023000 64731 16219 43112 44080 75548 75548 0.07251805008900192 TLSDLRLEF 9 Unmodified _TLSDLRLEF_ 0 0 0 REV__nc|ENSG00000197893|Q86VF7-4|NRAP REV__nc|ENSG00000197893|Q86VF7-4|NRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2981567382812 2 547.298039 1092.58152 0.46229 0.00025301 0.24043 0.00013159 0.70272 0.0003846 547.2982005931315 67.429 0.44607 67.429 67.175 67.621 0 42 19 3 0 0 0 0.28023 1 37637 37637 18.146 2.8979 1 4543900 + 64732 23966 43113 44081 75549 75549 0.038937082691290925 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.3086547851562 2 540.308406 1078.60226 -0.062712 -3.3884E-05 -1.2642 -0.00068305 -1.3269 -0.00071694 540.3077398448205 70.753 0.33007 70.753 70.565 70.895 0 62 38 2 0 0 0 0.091924 2 39388 39388;39489 34.932 16.786 1 4344700 64733 10885 43114 44082 75550;75551 75550 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.30810546875 2 540.308406 1078.60226 0.31516 0.00017028 -0.15826 -8.551E-05 0.1569 8.4774E-05 540.3082464645508 71.205 0.68648 70.727 70.459 71.146 -0.47735 96 29 5 0 0 0 0.033587 3 38987 38879;38987;39093 53.404 15.228 1 108980000 64734 10885 43114 44082 75552;75553;75554 75553 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3092041015625 2 540.308406 1078.60226 0.92425 0.00049938 0.13829 7.4718E-05 1.0625 0.0005741 540.3085082316134 70.633 0.53461 70.668 70.444 70.979 0.035515 79 24 5 0 0 0 0.024189 2 38823 38823;38926 59.368 28.1 1 35072000 64735 10885 43114 44082 75555;75556 75555 0.06610298648797652 TLSDLRVYL 9 Unmodified _TLSDLRVYL_ 0 0 0 ENST00000488788.2_1_20:629360-656142:-|nuORF;ENSG00000271303|ENST00000381962|SRXN1 ENST00000488788.2_1_20:629360-656142:-|nuORF ENST00000488788.2_1_20:629360-656142:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3090209960938 2 540.308406 1078.60226 0.62393 0.00033712 0.037178 2.0087E-05 0.66111 0.0003572 540.3083707847948 84.039 1.9547 77.863 76.883 78.837 -6.1757 319 108 4 0 0 0 0.021948 8 55199 54703;54829;54950;55075;55199;55327;55449;55597 61.602 15.596 1 147910000 64736 10885 43114 44082 75557;75558;75559;75560;75561;75562;75563;75564 75561 0.06610298648797652 TLSDVVVGL 9 Unmodified _TLSDVVVGL_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7633361816406 2 451.7633 901.512048 0.40648 0.00018363 0.70073 0.00031656 1.1072 0.0005002 451.7636673810649 72.284 0.27339 72.284 72.16 72.433 0 21 11 2 0 0 0 0.2001 1 40230 40230 23.148 9.6405 1 576780 64737 16114;16115 43115 44083 75565 75565 0.057352493203779886 TLSDVVVGL 9 Unmodified _TLSDVVVGL_ 0 0 0 nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-2|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 902.520751953125 1 902.519325 901.512048 0.050343 4.5436E-05 1.7433 0.0015734 1.7937 0.0016188 902.520068564425 72.266 0.21037 72.266 72.198 72.408 0 12 8 2 0 0 0 0.14602 1 40260 40260 28.487 11.545 1 481260 64738 16114;16115 43115 44083 75566 75566 0.057352493203779886 TLSEVNRYL 9 Unmodified _TLSEVNRYL_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7974243164062 2 547.795663 1093.57677 1.1717 0.00064184 0.21509 0.00011783 1.3868 0.00075966 547.7966881071181 62.432 0.4011 56.256 56.021 56.422 -6.1757 32 21 2 0 0 0 0.044011 1 40255 40255 47.749 5.6541 1 28328000 64739 10222 43116 44084 75567 75567 0.03372824126381602 TLSEVNRYL 9 Unmodified _TLSEVNRYL_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.795663 1093.57677 -0.55378 -0.00030336 -0.37867 -0.00020743 -0.93245 -0.00051079 547.795531156237 56.632 0.19374 56.146 56.071 56.265 -0.48554 -0.055103 -0.00022506 NaN 47.749 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6594700 64740 10222 43116 44084 0.03372824126381602 TLSEVTNQL 9 Unmodified _TLSEVTNQL_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7662353515625 2 502.766571 1003.51859 0.96525 0.0004853 -0.64713 -0.00032535 0.31812 0.00015994 502.76614228667285 47.655 0.31549 47.655 47.494 47.81 0 34 14 3 0 0 0 0.087258 1 26067 26067 36.044 0 1 9702500 64741 7952 43117 44085 75568 75568 0.016971424811004 TLSEVTNQL 9 Unmodified _TLSEVTNQL_ 0 0 0 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 ENSG00000170145|ENST00000304987|SIK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7666320800781 2 502.766571 1003.51859 1.2136 0.00061017 -2.2653 -0.0011389 -1.0517 -0.00052877 502.7650568859157 55.38 0.37228 49.459 49.334 49.706 -5.9211 34 22 2 0 0 0 0.087258 1 35225 35225 36.044 1.8569 1 19657000 64742 7952 43117 44085 75569 75569 0.016971424811004 TLSGKEEL 8 Unmodified _TLSGKEEL_ 0 0 0 REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1 REV__nc|ENSG00000064042|Q9UPQ0-9|LIMCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7369384765625 2 438.737283 875.460012 0.84858 0.0003723 -0.56472 -0.00024776 0.28386 0.00012454 438.73699297512724 51.289 0.24451 51.289 51.187 51.431 0 16 10 2 0 0 0 0.50586 1 28344 28344 34.187 5.7005 1 1986300 + 64743 17348 43118 44086 75570 75570 0.01730085906626755 TLSKDSNSY 9 Unmodified _TLSKDSNSY_ 0 0 0 REV__ENSG00000176971|ENST00000318627|FIBIN REV__ENSG00000176971|ENST00000318627|FIBIN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7074890136719 2 507.740554 1013.46655 1.0437 0.00052992 -0.74218 -0.00037684 0.3015 0.00015308 507.74012559638726 54.353 0.52735 54.353 54.07 54.597 0 39 23 2 0 0 0 0.17718 1 30037 30037 14.838 3.198 1 2784200 + 64744 22954 43119 44087 75571 75571 -0.0396402093266488 TLSLSANRLP 10 Unmodified _TLSLSANRLP_ 0 0 0 ENSG00000129009|ENST00000249842|ISLR ENSG00000129009|ENST00000249842|ISLR ENSG00000129009|ENST00000249842|ISLR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7843017578125 2 536.31148 1070.60841 0.0096939 5.1989E-06 2.7864 0.0014944 2.7961 0.0014996 536.3133583894245 33.216 0.27166 33.245 33.066 33.338 0.028934 25 11 3 0 0 0 0.23412 1 17508 17508 9.3831 0 1 2321000 64745 4109 43120 44088 75572 75572 0.07592816880310238 TLSLYLALVY 10 Unmodified _TLSLYLALVY_ 0 0 0 REV__ENST00000341255.3_1_22:44892449-44892605:-|nuORF REV__ENST00000341255.3_1_22:44892449-44892605:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2955322265625 2 578.336633 1154.65871 0.34132 0.0001974 -3.9032 -0.0022574 -3.5619 -0.00206 578.3340287011878 58.745 0.23682 58.255 58.133 58.369 -0.49079 17 11 2 0 0 0 0.23634 1 31957 31957 6.7232 0 1 3906500 + 64746 25704 43121 44089 75573 75573 0.08756926485466465 TLSPHIQAI 9 Unmodified _TLSPHIQAI_ 0 0 0 nc|ENSG00000138326|P62847-4|RPS24 nc|ENSG00000138326|P62847-4|RPS24 nc|ENSG00000138326|P62847-4|RPS24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.28271484375 2 490.282192 978.549831 0.50471 0.00024745 0.25123 0.00012317 0.75595 0.00037063 490.2822889317284 63.248 0.32652 62.762 62.622 62.948 -0.48617 30 14 3 0 0 0 0.28047 1 34572 34572 18.135 2.2878 1 4949000 64747 16224 43122 44090 75574 75574 0.059697603058339155 TLSPHIQAI 9 Unmodified _TLSPHIQAI_ 0 0 0 nc|ENSG00000138326|P62847-4|RPS24 nc|ENSG00000138326|P62847-4|RPS24 nc|ENSG00000138326|P62847-4|RPS24 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 490.282192 978.549831 0.17256 8.4602E-05 -0.10008 -4.9067E-05 0.072479 3.5535E-05 490.28237698535133 62.89 0.25913 62.89 62.704 62.963 0 0.063881 -0.00021096 NaN 18.135 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1022200 64748 16224 43122 44090 0.059697603058339155 TLSPQKLIG 9 Unmodified _TLSPQKLIG_ 0 0 0 REV__nc|ENSG00000170471|Q86X10-2|RALGAPB REV__nc|ENSG00000170471|Q86X10-2|RALGAPB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.2829284667969 2 478.792392 955.570232 1.1937 0.00057152 0.46379 0.00022206 1.6575 0.00079358 478.7928010738957 50.382 0.28165 44.842 44.647 44.929 -5.5391 37 17 3 0 0 0 0.19758 1 31651 31651 13.042 0 1 30933000 + 64749 22486 43123 44091 75575 75575 0.09066930965673237 TLSRTTYRR 9 Unmodified _TLSRTTYRR_ 0 0 0 ENSG00000083812|ENST00000196482|ZNF324 ENSG00000083812|ENST00000196482|ZNF324 ENSG00000083812|ENST00000196482|ZNF324 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.2337646484375 2 577.325454 1152.63635 0.73954 0.00042695 0.21897 0.00012642 0.95851 0.00055337 577.3252503504646 43.07 0.24436 38.305 38.146 38.39 -4.7648 22 15 2 0 0 0 0.18094 1 26092 26092 20.415 5.1661 1 9625000 64750 1375 43124 44092 75576 75576 0.06614139860403156 TLSSFLRTL 9 Unmodified _TLSSFLRTL_ 0 0 0 REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7427978515625 2 519.303124 1036.5917 0.51993 0.00027 -0.043597 -2.264E-05 0.47633 0.00024736 519.3031718932018 64.078 0.26643 63.593 63.492 63.758 -0.48512 19 12 2 0 0 0 0.19891 1 35016 35016 3.9444 0 1 823960 + 64751 29035 43125 44093 75577 75577 0.07486315994401593 TLSSIFTKDL 10 Unmodified _TLSSIFTKDL_ 0 0 0 nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8786926269531 3 375.544773 1123.61249 -0.42848 -0.00016091 -0.20403 -7.6622E-05 -0.63251 -0.00023753 375.5447864898437 30.834 0.2213 30.834 30.711 30.932 0 19 10 3 0 0 0 0.62068 1 16017 16017 5.7834 0 1 3551600 64752 4261 43126 44094 75578 75578 0.05562861583371159 TLSSIFTKDL 10 Unmodified _TLSSIFTKDL_ 0 0 0 nc|ENSG00000130783|Q6P9F0-3|CCDC62;nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 nc|ENSG00000130783|Q6P9F0-3|CCDC62 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 375.544773 1123.61249 1.5039 0.00056478 0.15976 5.9995E-05 1.6636 0.00062477 375.544619658709 34.886 0.19839 30.791 30.7 30.898 -4.0951 -0.021581 0.00032694 NaN 5.7834 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4256200 64753 4261 43126 44094 0.05562861583371159 TLSSKMKEL 9 Unmodified _TLSSKMKEL_ 0 0 0 ENST00000488700.5_1_10:97911224-97915106:+|nuORF ENST00000488700.5_1_10:97911224-97915106:+|nuORF ENST00000488700.5_1_10:97911224-97915106:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.2679443359375 2 518.788992 1035.56343 0.62824 0.00032592 -1.2564 -0.00065181 -0.62816 -0.00032588 518.788356191371 82.63 0.62317 76.454 76.124 76.747 -6.1757 117 35 4 0 0 0 0.20528 1 54475 54475 4.756 4.756 1 237550000 64754 14227 43127 44095 75579 75579 0.047072500227841374 TLSSYSLVL 9 Unmodified _TLSSYSLVL_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000504982.1_1_5:78944907-78964722:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.777099609375 2 491.776408 981.538263 0.65535 0.00032228 1.9364 0.00095229 2.5918 0.0012746 491.7771325670285 69.511 0.22282 69.542 69.46 69.683 0.030914 14 11 2 0 0 0 0.53666 1 38222 38222 5.2307 0 1 3070500 64755 7182 43128 44096 75580 75580 0.04675518491865205 TLSSYSLVL 9 Unmodified _TLSSYSLVL_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000504982.1_1_5:78944907-78964722:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.776408 981.538263 0.16246 7.9892E-05 2.555 0.0012565 2.7175 0.0013364 491.7772366792734 69.645 0.21847 69.645 69.557 69.775 0 0.051547 0.00045467 NaN 5.2307 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 314150 64756 7182 43128 44096 0.04675518491865205 TLSSYSLVL 9 Unmodified _TLSSYSLVL_ 0 0 0 nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2;ENST00000504982.1_1_5:78944907-78964722:+|nuORF nc|ENSG00000164329|Q6PIY7-2|TENT2 nc|ENSG00000164329|Q6PIY7-2|TENT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 491.776408 981.538263 0.65535 0.00032228 1.9364 0.00095229 2.5918 0.0012746 491.7771325670285 69.511 0.22282 69.542 69.46 69.683 0.030914 -0.051547 -0.00015372 NaN 5.2307 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3070500 64757 7182 43128 44096 0.04675518491865205 TLSYILPYF 9 Unmodified _TLSYILPYF_ 0 0 0 ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.8252563476562 2 558.802426 1115.5903 0.38723 0.00021639 -2.5794 -0.0014414 -2.1922 -0.001225 558.8007893799595 76.359 0.29301 75.879 75.639 75.932 -0.47945 18 11 2 0 0 0 0.17666 1 41712 41712 19.439 4.8573 1 690910 64758 8613;15494 43129 44097 75581 75581 0.03712681905631143 TLTDCVVVV 9 Carbamidomethyl (C) _TLTDC(Carbamidomethyl (C))VVVV_ TLTDC(1)VVVV TLTDC(57)VVVV 0 1 0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 ENSG00000177733|ENST00000314940|HNRNPA0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2686157226562 2 503.267893 1004.52123 0.90648 0.0004562 -0.40245 -0.00020254 0.50402 0.00025366 503.2678333773589 70.17 0.42508 63.994 63.78 64.205 -6.1757 41 24 2 0 0 0 0.026094 2 45891 45753;45891 57.471 30.588 1 30375000 64759 8707 43130 44098 75582;75583 75583 830 0.019152746144072808 TLTDVAHEY 9 Unmodified _TLTDVAHEY_ 0 0 0 nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L;nc|ENSG00000119760|O94864-4|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L nc|ENSG00000119760|O94864-2|SUPT7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7515258789062 2 524.750921 1047.48729 0.73596 0.0003862 -0.092606 -4.8595E-05 0.64336 0.0003376 524.7511350857546 36.915 0.16019 36.915 36.837 36.997 0 13 7 2 0 0 0 0.1773 1 19646 19646 25.399 12.357 1 2369800 64760 16155 43131 44099 75584 75584 -0.0345543055300368 TLTEEGVIKV 10 Unmodified _TLTEEGVIKV_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8135986328125 2 544.813522 1087.61249 0.85946 0.00046825 -0.13359 -7.278E-05 0.72588 0.00039547 544.8136173032883 54.943 0.33756 49.078 48.848 49.186 -5.8653 37 20 2 0 0 0 0.13008 1 34867 34867 42.312 15.429 1 12321000 64761 2532 43132 44100 75585 75585 0.07218861583396574 TLTFNRLY 8 Unmodified _TLTFNRLY_ 0 0 0 REV__ENSG00000012232|ENST00000220562|EXTL3 REV__ENSG00000012232|ENST00000220562|EXTL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8143310546875 2 514.282192 1026.54983 0.099323 5.108E-05 1.3881 0.00071389 1.4874 0.00076497 514.2829582717058 76.369 0.16797 75.89 75.764 75.932 -0.47945 9 6 2 0 0 0 8.7369 1 41740 41740 2.8892 0 1 456730 + 64762 17066 43133 44101 75586 75586 0.03761760305860662 TLTGLHRGF 9 Unmodified _TLTGLHRGF_ 0 0 0 ENST00000264335.12_1_17:1248430-1248544:-|nuORF ENST00000264335.12_1_17:1248430-1248544:-|nuORF ENST00000264335.12_1_17:1248430-1248544:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.2801818847656 2 501.279983 1000.54541 NaN NaN NaN NaN NaN NaN NaN 26.266 1 23.315 22.815 23.815 -2.9511 0 0 0 0.20153 1 14455 14455 30.637 2.1497 1 64763 11311 43134 44102 75587 75587 0.04516295882956456 TLTGNLFIII 10 Unmodified _TLTGNLFIII_ 0 0 0 nc|ENSG00000204700|O76002|OR2J2;ENSG00000204700|ENST00000641417|OR2J2 nc|ENSG00000204700|O76002|OR2J2 nc|ENSG00000204700|O76002|OR2J2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8369140625 2 552.8368 1103.65905 0.46889 0.00025922 0.0089395 4.9421E-06 0.47783 0.00026416 552.8366981529035 65.105 0.30002 64.621 64.47 64.77 -0.48428 34 13 3 0 0 0 0.051223 1 35490 35490 57.722 7.789 1 5538400 64764 10320 43135 44103 75588 75588 0.1113634620535322 TLTLSHLF 8 Unmodified _TLTLSHLF_ 0 0 0 REV__ENSG00000153930|ENST00000682825|ANKFN1 REV__ENSG00000153930|ENST00000682825|ANKFN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.9154663085938 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 7.5058 1 7.521 7.021 8.021 0.015238 0 0 0 0.97444 1 3744 3744 0.79363 0 1 + 64765 21197 43136 44104 75589 75589 0.04942972902847487 TLTNNIAITI 10 Unmodified _TLTNNIAITI_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.3146362304688 2 537.313689 1072.61282 0.19802 0.0001064 1.3543 0.00072769 1.5523 0.00083409 537.3139429967014 64.77 0.26854 64.77 64.65 64.919 0 25 11 3 0 0 0 0.16361 1 36101 36101 38.176 1.6694 1 2638600 + 64766 22437 43137 44105 75590 75590 0.07942281303235177 TLTNNIAITI 10 Unmodified _TLTNNIAITI_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.313689 1072.61282 0.19106 0.00010266 0.86539 0.00046498 1.0564 0.00056764 537.3136547566146 65.192 0.21879 64.708 64.595 64.814 -0.48428 -0.031085 -0.00022656 NaN 38.176 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1636700 + 64767 22437 43137 44105 0.07942281303235177 TLTNVIHNL 9 Unmodified _TLTNVIHNL_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2564697265625 2 512.792924 1023.57129 0.074964 3.8441E-05 -0.11652 -5.9752E-05 -0.041559 -2.1311E-05 512.7932518065219 55.08 0.18353 55.08 54.986 55.17 0 12 7 2 0 0 0 0.20727 1 30580 30580 7.9102 0 1 591150 64768 3701 43138 44106 75591 75591 0.0604514533456495 TLTNVIHNL 9 Unmodified _TLTNVIHNL_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7929077148438 2 512.792924 1023.57129 0.34104 0.00017488 0.051247 2.6279E-05 0.39228 0.00020116 512.7929152100074 55.565 0.28683 55.087 54.927 55.213 -0.47798 32 13 3 0 0 0 0.018301 1 30114 30114 65.235 21.377 1 5677800 64769 3701 43138 44106 75592 75592 0.0604514533456495 TLTNVIHNL 9 Unmodified _TLTNVIHNL_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MSMS AL20221201_MKP_PDAC_01 4 512.7931518554688 2 512.792924 1023.57129 NaN NaN NaN NaN NaN NaN NaN 61.323 1 55.176 54.676 55.676 -6.1478 0 0 0 0.028486 1 39495 39495 68.081 25.986 1 64770 3701 43138 44106 75593 75593 0.0604514533456495 TLTQGLPFF 9 Unmodified _TLTQGLPFF_ 0 0 0 REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2809448242188 2 512.279118 1022.54368 0.53174 0.0002724 -1.8974 -0.00097202 -1.3657 -0.00069962 512.7787029544996 68.153 0.5993 61.977 61.69 62.289 -6.1757 45 35 2 0 0 0 0.10734 1 44563 44563 32.305 4.6767 1 40784000 + 64771 26127 43139 44107 75594 75594 0.03331242074330021 TLTQGLPFF 9 Unmodified _TLTQGLPFF_ 0 0 0 REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.2793579101562 2 512.279118 1022.54368 NaN NaN NaN NaN NaN NaN NaN 67.912 1 61.737 61.237 62.237 -6.1757 0 0 0 0.15549 1 44285 44285 36.127 8.4982 1 + 64772 26127 43139 44107 75595 75595 0.03331242074330021 TLTQGLPFF 9 Unmodified _TLTQGLPFF_ 0 0 0 REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 512.2794799804688 2 512.279118 1022.54368 NaN NaN NaN NaN NaN NaN NaN 68.101 1 61.925 61.425 62.425 -6.1757 0 0 0 0.12343 1 44423 44423 39.95 7.164 1 + 64773 26127 43139 44107 75596 75596 0.03331242074330021 TLTQGLPFF 9 Unmodified _TLTQGLPFF_ 0 0 0 REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF REV__ENST00000372797.7_2_1:40538157-40538229:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 512.2794799804688 2 512.279118 1022.54368 0.53174 0.0002724 -1.8974 -0.00097202 -1.3657 -0.00069962 512.7787029544996 68.153 0.5993 61.977 61.69 62.289 -6.1757 45 35 2 0 0 0 0.068642 1 44423 44423 39.95 12.321 1 40784000 + 64774 26127 43139 44107 75597 75597 0.03331242074330021 TLTSSAFLLFQ 11 Unmodified _TLTSSAFLLFQ_ 0 0 0 ENST00000490134.1_1_9:108337313-108359001:+|nuORF;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN ENST00000490134.1_1_9:108337313-108359001:+|nuORF ENST00000490134.1_1_9:108337313-108359001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3349609375 2 614.334621 1226.65469 0.66855 0.00041071 0.65629 0.00040318 1.3248 0.00081389 614.3348694549002 71.893 0.25534 71.417 71.293 71.549 -0.4761 19 9 3 0 0 0 0.48615 1 39332 39332 17.113 4.0704 1 1511300 64775 2454 43140 44108 75598 75598 0.05042836991765398 TLTSSAFLLFQ 11 Unmodified _TLTSSAFLLFQ_ 0 0 0 ENST00000490134.1_1_9:108337313-108359001:+|nuORF;nc|ENSG00000106692|O75072-2|FKTN;ENSG00000106692|ENST00000357998|FKTN ENST00000490134.1_1_9:108337313-108359001:+|nuORF ENST00000490134.1_1_9:108337313-108359001:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.336669921875 2 614.334621 1226.65469 1.2659 0.00077771 2.3891 0.0014677 3.655 0.0022454 614.3357447603796 71.272 0.31195 71.311 71.157 71.469 0.039024 25 13 3 0 0 0 0.48615 1 39242 39242 17.113 3.2068 1 2313500 64776 2454 43140 44108 75599 75599 0.05042836991765398 TLTVKRFSH 9 Unmodified _TLTVKRFSH_ 0 0 0 REV__ENSG00000145214|ENST00000273814|DGKQ REV__ENSG00000145214|ENST00000273814|DGKQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8142700195312 2 544.81419 1087.61383 -0.52184 -0.0002843 0.62533 0.00034069 0.10349 5.6382E-05 544.814580703493 48.666 0.25278 48.666 48.555 48.808 0 29 11 3 0 0 0 0.20428 1 26738 26738 22.736 22.736 1 6447700 + 64777 20759 43141 44109 75600 75600 0.07352540462807156 TLTVTGLPLL 10 Unmodified _TLTVTGLPLL_ 0 0 0 REV__ENSG00000145248|ENST00000273861|SLC10A4 REV__ENSG00000145248|ENST00000273861|SLC10A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3235473632812 2 514.323525 1026.6325 1.489 0.00076583 0.4245 0.00021833 1.9135 0.00098416 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.71276 1 73289 73289 1.4819 0 1 4939700 + 64778 20764 43142 44110 75601 75601 0.12024657314009346 TLTWPADRIVE 11 Unmodified _TLTWPADRIVE_ 0 0 0 REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B REV__nc|ENSG00000102230|Q9Y5K3-2|PCYT1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.8507080078125 2 650.848427 1299.6823 NaN NaN NaN NaN NaN NaN NaN 89.455 1 89.455 88.955 89.955 0 0 0 0 0.94184 1 49496 49496 1.1933 0.23107 1 + 64779 18230 43143 44111 75602 75602 0.04444740251983603 TLTYPRNPL 9 Unmodified _TLTYPRNPL_ 0 0 0 REV__nc|ENSG00000250486|Q96MZ4|FAM218A REV__nc|ENSG00000250486|Q96MZ4|FAM218A MSMS AL20221201_MKP_PDAC_01 4 537.7987060546875 2 537.800749 1073.58694 NaN NaN NaN NaN NaN NaN NaN 22.296 1 19.562 19.062 20.062 -2.7348 0 0 0 0.43483 1 11986 11986 18.146 2.8979 1 + 64780 29978 43144 44112 75603 75603 0.0530943185160595 TLVALGALAL 10 Unmodified _TLVALGALAL_ 0 0 0 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 ENSG00000277893|ENST00000622030|SRD5A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.3052673339844 2 471.305136 940.595718 0.44122 0.00020795 0.98517 0.00046431 1.4264 0.00067226 471.3056234334281 55.378 0.29379 54.9 54.733 55.026 -0.47798 20 13 2 0 0 0 0.52888 1 30031 30031 14.838 0.93222 1 1027600 64781 10928 43145 44113 75604 75604 0.12304405488077919 TLVCAALG 8 Unmodified _TLVCAALG_ 0 0 0 REV__ENSG00000099910|ENST00000328879|KLHL22 REV__ENSG00000099910|ENST00000328879|KLHL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2068786621094 2 374.207107 746.399661 0.35346 0.00013227 -0.7084 -0.00026509 -0.35494 -0.00013282 374.2066689822068 59.195 0.40518 59.141 58.887 59.292 -0.054344 48 19 3 0 0 0 0.80975 1 32174 32174 0.79363 0 1 10406000 + 64782 17991 43146 44114 75605 75605 0.01631697042535052 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3087768554688 2 546.308406 1090.60226 0.45794 0.00025018 0.22688 0.00012395 0.68483 0.00037413 546.3085176611165 82.424 0.3373 81.929 81.742 82.079 -0.4952 33 13 3 0 0 0 0.2289 2 45074 45074;45175 27.629 16.149 1 4271000 64783 3336 43147 44115 75606;75607 75606 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8102416992188 2 546.308406 1090.60226 1.2658 0.00069153 -2.8404 -0.0015517 -1.5746 -0.0008602 546.3064103726779 97.661 0.20209 91.485 91.384 91.587 -6.1757 27 12 3 0 0 0 0.033747 1 64692 64692 66.457 26.499 1 33781000 64784 3336 43147 44115 75608 75608 0.06058298648804339 TLVDEVFRI 9 Unmodified _TLVDEVFRI_ 0 0 0 ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2 ENSG00000117748|ENST00000373912|RPA2 ENSG00000117748|ENST00000373912|RPA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 546.308406 1090.60226 0.25378 0.00013864 0.71828 0.0003924 0.97206 0.00053105 546.3083644603255 81.908 0.20267 81.908 81.82 82.022 0 -0.010682 0.00046654 NaN 27.629 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 458240 64785 3336 43147 44115 0.06058298648804339 TLVDEVNL 8 Unmodified _TLVDEVNL_ 0 0 0 REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.74609375 2 451.745108 901.475663 1.2019 0.00054294 0.20189 9.1201E-05 1.4038 0.00063414 451.7451456279877 49.558 0.45303 49.51 49.29 49.743 -0.048828 67 22 4 0 0 0 0.57045 2 26722 26722;26833 28.487 2.1456 1 35760000 + 64786 20681 43148 44116 75609;75610 75609 0.02098372423665751 TLVDEVNL 8 Unmodified _TLVDEVNL_ 0 0 0 REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT REV__nc|ENSG00000143919|Q7Z624-2|CAMKMT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2661743164062 2 451.745108 901.475663 1.2019 0.00054294 0.20189 9.1201E-05 1.4038 0.00063414 451.7451456279877 49.558 0.45303 49.51 49.29 49.743 -0.048828 67 22 4 0 0 0 8.7369 1 26787 26787 12.532 0.89125 1 35760000 + 64787 20681 43148 44116 75611 75611 0.02098372423665751 TLVDFDNHL 9 Unmodified _TLVDFDNHL_ 0 0 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813316-85813502:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7455444335938 2 537.266739 1072.51892 0.43885 0.00023578 1.9587 0.0010524 2.3976 0.0012881 537.2674341887162 56.946 0.27458 56.946 56.813 57.087 0 26 11 3 0 0 0 0.18482 1 31707 31707 8.7454 0 1 3818700 64788 4303 43149 44117 75612 75612 -0.014434377990482972 TLVDFDNHL 9 Unmodified _TLVDFDNHL_ 0 0 0 ENSG00000131148|ENST00000253457|EMC8;ENST00000597291.1_1_16:85813316-85813502:-|nuORF ENSG00000131148|ENST00000253457|EMC8 ENSG00000131148|ENST00000253457|EMC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2676391601562 2 537.266739 1072.51892 1.2379 0.00066508 2.786 0.0014968 4.0239 0.0021619 537.2680897172612 63.934 0.35976 57.758 57.595 57.955 -6.1757 27 19 2 0 0 0 0.018301 1 41360 41360 65.235 25.278 1 19123000 64789 4303 43149 44117 75613 75613 -0.014434377990482972 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8006591796875 2 527.800217 1053.58588 0.3802 0.00020067 -0.36535 -0.00019283 0.014846 7.8357E-06 527.8000221961148 88.395 0.3675 87.89 87.701 88.068 -0.50423 43 16 4 0 0 0 0.12841 2 48390 48290;48390 30.225 13.283 1 5593700 64790 2724 43150 44118 75614;75615 75615 0.06123217482695509 TLVDFPLHL 9 Unmodified _TLVDFPLHL_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.80029296875 2 527.800217 1053.58588 0.17143 9.0482E-05 0.87094 0.00045968 1.0424 0.00055016 527.8006328888381 99.002 0.14259 92.827 92.752 92.894 -6.1757 21 8 3 0 0 0 0.038285 1 65802 65802 50.855 23.971 1 135560000 64791 2724 43150 44118 75616 75616 0.06123217482695509 TLVDNTINL 9 Unmodified _TLVDNTINL_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7774658203125 2 501.776939 1001.53933 0.42644 0.00021398 0.8501 0.00042656 1.2765 0.00064054 501.77730824247345 63.219 0.4193 63.219 62.942 63.361 0 33 17 3 0 0 0 0.03568 1 35289 35289 52.268 14.294 1 2816400 64792 2488 43151 44119 75617 75617 0.038617328607642776 TLVEAIKQV 9 Unmodified _TLVEAIKQV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8070983886719 2 500.8055 999.596446 0.3261 0.00016331 0.96113 0.00048134 1.2872 0.00064465 500.8060759630123 49.325 0.22489 48.954 48.799 49.024 -0.37172 16 10 2 0 0 0 0.039985 1 26506 26506 49.933 17.628 1 2388000 64793 6383 43152 44120 75618 75618 0.09663200137140393 TLVEAIKQV 9 Unmodified _TLVEAIKQV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8059692382812 2 500.8055 999.596446 1.2759 0.00063897 -0.29001 -0.00014524 0.98587 0.00049373 500.8054010360428 55.483 0.34398 49.562 49.393 49.737 -5.9211 25 20 2 0 0 0 0.0074135 1 35314 35314 110.67 25.403 1 17065000 64794 6383 43152 44120 75619 75619 0.09663200137140393 TLVEAIKQV 9 Unmodified _TLVEAIKQV_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 500.8055 999.596446 0.2793 0.00013988 -0.42744 -0.00021406 -0.14814 -7.4188E-05 500.8051933945945 48.995 0.19556 48.995 48.932 49.128 0 0.020696 -0.00038218 NaN 49.933 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2973900 64795 6383 43152 44120 0.09663200137140393 TLVEELKTF 9 Unmodified _TLVEELKTF_ 0 0 0 REV__ENSG00000148834|ENST00000369713|GSTO1 REV__ENSG00000148834|ENST00000369713|GSTO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.3037719726562 2 540.30279 1078.59103 0.53582 0.0002895 0.46855 0.00025316 1.0044 0.00054266 540.3031647883477 81.864 0.44432 81.369 81.113 81.557 -0.4952 36 16 3 0 0 0 0.49272 1 44889 44889 7.9102 0 1 1759400 + 64796 20971 43153 44121 75620 75620 0.05487476554662862 TLVIIEKTY 9 Unmodified _TLVIIEKTY_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3218383789062 2 540.320983 1078.62741 1.4302 0.00077275 -0.074567 -4.029E-05 1.3556 0.00073246 540.3209578986668 104.5 0.081482 98.321 98.267 98.348 -6.1757 13 7 2 0 0 0 0.58499 1 69959 69959 3.9444 0 1 21441000 64797 7546 43154 44122 75621 75621 0.09124353451397837 TLVNLQVAY 9 Unmodified _TLVNLQVAY_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7906188964844 2 510.78985 1019.56515 -0.32718 -0.00016712 1.1092 0.00056658 0.78205 0.00039946 510.7905260509711 69.705 0.29255 69.226 69.109 69.401 -0.47903 16 12 2 0 0 0 0.28023 1 38097 38097 18.146 7.3224 1 806260 64798 5187 43155 44123 75622 75622 0.05614627103034309 TLVNLQVAY 9 Unmodified _TLVNLQVAY_ 0 0 0 nc|ENSG00000139746|Q5T8P6-3|RBM26;nc|ENSG00000139746|Q5T8P6-2|RBM26;ENSG00000139746|ENST00000438737|RBM26;nc|ENSG00000139746|Q5T8P6-5|RBM26;nc|ENSG00000139746|Q5T8P6-4|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 nc|ENSG00000139746|Q5T8P6-3|RBM26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7898559570312 2 510.78985 1019.56515 0.44653 0.00022808 -0.45194 -0.00023085 -0.0054133 -2.7651E-06 510.78979079826587 77.487 0.34832 71.311 71.17 71.518 -6.1757 31 19 2 0 0 0 0.0083938 2 50650 50650;50781 108 39.916 1 15328000 64799 5187 43155 44123 75623;75624 75623 0.05614627103034309 TLVPDVEI 8 Unmodified _TLVPDVEI_ 0 0 0 REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2498779296875 2 443.250026 884.485499 NaN NaN NaN NaN NaN NaN NaN 76.699 1 76.22 75.72 76.72 -0.47945 0 0 0 0.85111 1 41994 41994 20.871 0 1 + 64800 19350 43156 44124 75625 75625 0.03863560429056179 TLVPLLVVLG 10 Unmodified _TLVPLLVVLG_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3453369140625 2 512.344261 1022.67397 NaN NaN NaN NaN NaN NaN NaN 104.16 1 104.11 103.61 104.61 -0.048737 0 0 0 1.0061 1 57835 57835 0 0 1 64801 1335 43157 44125 75626 75626 0.1635383807334847 TLVPPLETF 9 Unmodified _TLVPPLETF_ 0 0 0 REV__nc|ENSG00000155313|Q9UHP3|USP25 REV__nc|ENSG00000155313|Q9UHP3|USP25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7874450683594 2 508.786776 1015.559 NaN NaN NaN NaN NaN NaN NaN 91.618 1 91.618 91.118 92.118 0 0 0 0 0.84564 1 50665 50665 2.0598 0 1 + 64802 21267 43158 44126 75627 75627 0.05184108871526405 TLVPWYFW 8 Unmodified _TLVPWYFW_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.75830078125 2 556.284203 1110.55385 0.49254 0.00027399 0.37212 0.000207 0.86466 0.000481 556.7857836893403 58.843 0.24456 58.353 58.29 58.535 -0.49079 17 11 2 0 0 0 8.7369 1 31987 31987 15.768 0.92995 1 2661100 64803 1685 43159 44127 75628 75628 0.002998497995577054 TLVYHVVGV 9 Unmodified _TLVYHVVGV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7868041992188 2 493.78711 985.559667 0.54925 0.00027121 -0.18277 -9.0248E-05 0.36648 0.00018096 493.7871332660225 52.876 0.29414 52.425 52.28 52.574 -0.45173 42 14 4 0 0 0 0.023164 1 28557 28557 60.39 33.506 1 11793000 64804 9729 43160 44128 75629 75629 0.06630948311237717 TLVYHVVGV 9 Unmodified _TLVYHVVGV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.787109375 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 52.554 1 52.495 51.995 52.995 -0.058918 0 0 0 0.20498 1 28474 28474 30.225 0 1 64805 9729 43160 44128 75630 75630 0.06630948311237717 TLVYHVVGV 9 Unmodified _TLVYHVVGV_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-2|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.787841796875 2 493.78711 985.559667 1.4793 0.00073046 0.61264 0.00030251 2.0919 0.001033 493.78717699038174 58.84 0.4985 52.766 52.475 52.973 -6.0745 69 27 3 0 0 0 0.023164 2 37771 37645;37771 60.39 34.99 1 38271000 64806 9729 43160 44128 75631;75632 75632 0.06630948311237717 TLWDSYLEV 9 Unmodified _TLWDSYLEV_ 0 0 0 REV__ENSG00000117115|ENST00000375486|PADI2 REV__ENSG00000117115|ENST00000375486|PADI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.27587890625 2 563.276772 1124.53899 0.31365 0.00017667 -0.2419 -0.00013626 0.071746 4.0413E-05 563.2765193467106 76.803 0.25449 76.803 76.637 76.892 0 24 10 3 0 0 0 0.39863 1 42657 42657 12.532 3.9383 1 1311400 + 64807 19085 43161 44129 75633 75633 -0.018296868591050952 TLWFFFSF 8 Unmodified _TLWFFFSF_ 0 0 0 nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF;ENSG00000189339|ENST00000617444|SLC35E2B nc|ENSG00000215790|P0CK97-2|SLC35E2A nc|ENSG00000215790|P0CK97-2|SLC35E2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7724609375 2 547.770929 1093.5273 0.29478 0.00016147 1.4228 0.00077939 1.7176 0.00094087 547.7718857722256 76.278 0.31832 76.278 76.15 76.468 0 28 12 3 0 0 0 0.80143 1 42396 42396 5.7604 0 1 2332500 64808 9744 43162 44130 75634 75634 -0.015718390917754732 TLWGGLLRL 9 Unmodified _TLWGGLLRL_ 0 0 0 ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B ENSG00000175348|ENST00000534025|TMEM9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.816650390625 2 514.816202 1027.61785 0.18265 9.4032E-05 -0.05539 -2.8515E-05 0.12726 6.5517E-05 514.8164077616141 99.819 0.10355 93.643 93.574 93.677 -6.1757 15 7 3 0 0 0 0.011968 1 66581 66581 74.929 28.008 1 42364000 64809 8513 43163 44131 75635 75635 0.10514629956514909 TLWLPGPA 8 Unmodified _TLWLPGPA_ 0 0 0 ENST00000164024.4_1_3:48689051-48689879:-|nuORF ENST00000164024.4_1_3:48689051-48689879:-|nuORF ENST00000164024.4_1_3:48689051-48689879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.4725952148438 1 854.477066 853.469789 0.055523 4.7443E-05 -4.0506 -0.0034611 -3.995 -0.0034137 854.4738281588949 102.12 0.069687 102.12 102.07 102.13 0 4 2 2 0 0 0 0.80676 1 56326 56326 2.5775 0 1 2488100 64810 10977 43164 44132 75636 75636 0.03719318702644614 TLWNQELYI 9 Unmodified _TLWNQELYI_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.3064575195312 2 590.305864 1178.59717 0.47527 0.00028056 0.67419 0.00039798 1.1495 0.00067854 590.3062508590004 86.901 0.34444 86.398 86.242 86.586 -0.50318 35 13 4 0 0 0 0.095405 2 47534 47534;47632 34.102 12.356 1 1930800 64811 979 43165 44133 75637;75638 75637 0.015019947861901528 TLWNQELYI 9 Unmodified _TLWNQELYI_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.307373046875 2 590.305864 1178.59717 1.3492 0.00079645 1.2027 0.00070994 2.5519 0.0015064 590.3062417556104 97.515 0.37686 91.34 91.044 91.421 -6.1757 30 20 3 0 0 0 0.018301 1 64619 64619 65.235 29.108 1 14304000 64812 979 43165 44133 75639 75639 0.015019947861901528 TLWNQELYI 9 Unmodified _TLWNQELYI_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MSMS AL20221201_MKP_PDAC_01 4 589.9725341796875 2 590.305864 1178.59717 NaN NaN NaN NaN NaN NaN NaN 97.606 1 91.43 90.93 91.93 -6.1757 0 0 0 0.032808 1 64682 64682 65.235 28.729 1 64813 979 43165 44133 75640 75640 0.015019947861901528 TLWRKNALF 9 Unmodified _TLWRKNALF_ 0 0 0 REV__ENST00000371352.5_1_X:119410741-119419782:-|nuORF REV__ENST00000371352.5_1_X:119410741-119419782:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8320922851562 2 574.832383 1147.65021 NaN NaN NaN NaN NaN NaN NaN 92.414 1 91.933 91.433 92.433 -0.48092 0 0 0 0.85737 1 50510 50510 0.6015 0 1 + 64814 26079 43166 44134 75641 75641 0.08229417359484614 TLWRQKKEKQN 11 Unmodified _TLWRQKKEKQN_ 0 0 0 REV__ENST00000369838.5_1_6:80409629-80409749:+|nuORF REV__ENST00000369838.5_1_6:80409629-80409749:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 729.9149780273438 2 729.912424 1457.8103 3.9353 0.0028724 -0.24576 -0.00017938 3.6895 0.002693 729.9122368055691 98.393 0.34039 98.365 98.218 98.559 -0.028282 33 12 4 0 0 0 0.44182 1 54653 54653 19.362 4.9566 1 5532100 + 64815 26045 43167 44135 75642 75642 0.09970300565873913 TLWVDPYEV 9 Unmodified _TLWVDPYEV_ 0 0 0 ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1 ENSG00000159388|ENST00000290551|BTG2 ENSG00000159388|ENST00000290551|BTG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2799682617188 2 561.279315 1120.54408 0.35195 0.00019754 0.38086 0.00021377 0.7328 0.00041131 561.2796056318715 80.656 0.69067 80.656 80.43 81.121 0 116 32 5 0 0 0 0.047196 1 44929 44929 46.021 24.274 1 10988000 64816 4524 43168 44136 75643 75643 -0.011373829964895776 TLWYTFYPR 9 Unmodified _TLWYTFYPR_ 0 0 0 REV__ENSG00000129667|ENST00000675367|RHBDF2 REV__ENSG00000129667|ENST00000675367|RHBDF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.8163452148438 2 623.816399 1245.61824 NaN NaN NaN NaN NaN NaN NaN 102.15 1 102.03 101.53 102.53 -0.11613 0 0 0 0.85798 1 55735 55735 0.52476 0 1 + 64817 19678 43169 44137 75644 75644 0.005260048856825961 TLYDHVDEV 9 Unmodified _TLYDHVDEV_ 0 0 0 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 ENSG00000101138|ENST00000217109|CSTF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7559814453125 2 545.756204 1089.49785 NaN NaN NaN NaN NaN NaN NaN 38.795 1 38.795 38.295 39.295 0 0 0 0 0.065563 1 20744 20744 52.268 25.385 1 64818 1917 43170 44138 75645 75645 -0.04331447898562146 TLYDSRLFV 9 Unmodified _TLYDSRLFV_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3004150390625 2 557.300581 1112.58661 0.755 0.00042076 -0.19663 -0.00010958 0.55838 0.00031118 557.3003649813077 64.655 0.45183 64.17 63.821 64.273 -0.48512 47 20 3 0 0 0 0.2546 1 35244 35244 19.362 7.1213 1 3836200 64819 7643 43171 44139 75646 75646 0.03482012131780721 TLYEAVREV 9 Unmodified _TLYEAVREV_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7916870117188 2 540.290214 1078.56587 -0.20912 -0.00011298 1.2297 0.00066439 1.0206 0.0005514 540.2908576168712 45.025 0.22763 45.025 44.887 45.114 0 38 11 4 0 0 0 0.01958 1 24478 24478 63.961 24.011 1 150410000 64820 10143 43172 44140 75647 75647 0.029734217520854145 TLYEHNNEL 9 Unmodified _TLYEHNNEL_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.767822265625 2 566.767103 1131.51965 -0.59487 -0.00033716 -0.09174 -5.1995E-05 -0.68662 -0.00038915 566.7672331721471 30.41 0.2394 30.41 30.263 30.503 0 25 11 3 0 0 0 0.0094097 1 15770 15770 82.529 51.893 1 6858700 64821 1639 43173 44141 75648 75648 -0.0408464315000856 TLYEHNNEL 9 Unmodified _TLYEHNNEL_ 0 0 0 ENSG00000094914|ENST00000209873|AAAS;ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS ENSG00000094914|ENST00000209873|AAAS ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.76806640625 2 566.767103 1131.51965 1.0317 0.00058473 0.18122 0.00010271 1.2129 0.00068744 566.767197857431 34.7 0.38211 30.604 30.419 30.801 -4.0951 58 22 3 0 0 0 0.0082548 2 20102 19969;20102 96.367 63.581 1 21773000 64822 1639 43173 44141 75649;75650 75650 -0.0408464315000856 TLYFFLEVV 9 Unmodified _TLYFFLEVV_ 0 0 0 REV__ENSG00000108960|ENST00000262065|MMD REV__ENSG00000108960|ENST00000262065|MMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5433349609375 3 377.542593 1129.60595 NaN NaN NaN NaN NaN NaN NaN 15.467 1 15.473 14.973 15.973 0.0057774 0 0 0 0.84737 1 7709 7709 0.96228 0 1 + 64823 18639 43174 44142 75651 75651 0.04632968422652084 TLYGFLASIF 10 Unmodified _TLYGFLASIF_ 0 0 0 REV__ENSG00000139974|ENST00000267488|SLC38A6 REV__ENSG00000139974|ENST00000267488|SLC38A6 MSMS AL20221201_MKP_PDAC_01 4 566.309814453125 2 566.307875 1130.6012 NaN NaN NaN NaN NaN NaN NaN 102.58 1 96.405 95.905 96.905 -6.1757 0 0 0 0.5926 1 68834 68834 21.747 1.293 1 + 64824 20442 43175 44143 75652 75652 0.04112084279881856 TLYGSVYMYK 10 Unmodified _TLYGSVYMYK_ 0 0 0 REV__ENST00000248594.10_1_7:77269294-77269360:+|nuORF REV__ENST00000248594.10_1_7:77269294-77269360:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8695983886719 3 408.870492 1223.58965 NaN NaN NaN NaN NaN NaN NaN 25.934 1 25.917 25.417 26.417 -0.017006 0 0 0 0.81803 1 13320 13320 11.518 1.9739 1 + 64825 24872 43176 44144 75653 75653 -0.013204808057480477 TLYKNQEKL 9 Unmodified _TLYKNQEKL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MSMS AL20221201_MKP_PDAC_01 4 568.817626953125 2 568.819138 1135.62372 NaN NaN NaN NaN NaN NaN NaN 50.418 1 44.878 44.378 45.378 -5.5391 0 0 0 0.50124 1 31621 31621 15.847 0 1 64826 8479 43177 44145 75654 75654 0.06133683677512636 TLYLTLQTL 9 Unmodified _TLYLTLQTL_ 0 0 0 REV__ENSG00000103599|ENST00000335894|IQCH REV__ENSG00000103599|ENST00000335894|IQCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3141479492188 2 533.313158 1064.61176 0.98431 0.00052494 1.2417 0.00066222 2.226 0.0011872 533.3139493187034 90.481 0.48255 84.305 84.041 84.523 -6.1757 49 28 2 0 0 0 0.12841 1 59865 59865 30.225 5.5509 1 23819000 + 64827 18319 43178 44146 75655 75655 0.08204066934331422 TLYSLHPKD 9 Unmodified _TLYSLHPKD_ 0 0 0 REV__ENSG00000106789|ENST00000375077|CORO2A REV__ENSG00000106789|ENST00000375077|CORO2A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7583618164062 2 537.284931 1072.55531 -0.42329 -0.00022742 0.94466 0.00050755 0.52137 0.00028013 537.2854933376001 27.073 0.2035 27.073 26.952 27.155 0 14 9 2 0 0 0 0.21052 1 13893 13893 6.7232 0 1 664490 + 64828 18536 43179 44147 75656 75656 0.021934390976639406 TLYSPLYWG 9 Unmodified _TLYSPLYWG_ 0 0 0 REV__nc|ENSG00000101276|Q9NQ40-2|SLC52A3 REV__nc|ENSG00000101276|Q9NQ40-2|SLC52A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8016967773438 2 550.276575 1098.5386 0.26839 0.00014769 -0.24006 -0.0001321 0.028323 1.5585E-05 550.2765544587438 53.09 0.1797 53.026 52.901 53.08 -0.063419 12 8 2 0 0 0 0.18521 1 28758 28758 16.942 0 1 1283000 + 64829 18153 43180 44148 75657 75657 -0.0067306178827948315 TLYTCSSALS 10 Unmodified _TLYTCSSALS_ 0 0 0 REV__ENST00000590067.5_1_19:3053819-3055997:-|nuORF REV__ENST00000590067.5_1_19:3053819-3055997:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.1901245117188 2 523.247157 1044.47976 0.58689 0.00030709 0.97757 0.00051151 1.5645 0.0008186 523.2480214434094 50.123 0.29585 50.123 49.986 50.282 0 23 13 2 0 0 0 0.22941 1 27634 27634 5.7319 0 1 3087900 + 64830 29145 43181 44149 75658 75658 -0.04069906144923152 TLYTLVTDKAF 11 Unmodified _TLYTLVTDKAF_ 0 0 0 REV__ENSG00000168131|ENST00000303324|OR2B2 REV__ENSG00000168131|ENST00000303324|OR2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5679321289062 3 424.567578 1270.6809 0.068616 2.9132E-05 1.2681 0.0005384 1.3367 0.00056753 424.56810622261565 51.153 0.24488 51.099 50.942 51.187 -0.053871 27 11 3 0 0 0 0.59689 1 27687 27687 6.2344 0 1 6010000 + 64831 22293 43182 44150 75659 75659 0.05639106163221186 TLYTNEIKFFM 11 Unmodified _TLYTNEIKFFM_ 0 0 0 REV__ENST00000346085.9_2_6:157529626-157529725:+|nuORF REV__ENST00000346085.9_2_6:157529626-157529725:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3550415039062 2 703.854864 1405.69517 -0.62903 -0.00044274 -0.15883 -0.00011179 -0.78786 -0.00055454 703.8547823047818 26.538 0.20756 26.538 26.428 26.636 0 21 9 3 0 0 0 0.6889 1 13645 13645 5.2969 0.39987 1 2203700 + 64832 25759 43183 44151 75660 75660 0.008554353198405806 TLYTSLCTL 9 Unmodified _TLYTSLCTL_ 0 0 0 ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENSG00000156804|ENST00000517956|FBXO32 ENST00000287396.2_1_8:124515615-124544254:-|nuORF ENST00000287396.2_1_8:124515615-124544254:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7623596191406 2 507.762443 1013.51033 0.28039 0.00014237 -4.1006 -0.0020821 -3.8202 -0.0019398 507.7614415370467 82.52 0.31358 82.025 81.843 82.156 -0.4952 19 12 2 0 0 0 0.39863 1 45120 45120 12.532 0 1 1486300 64833 6481 43184 44152 75661 75661 0.004118722401244668 TMADQIVTV 9 Oxidation (M) _TM(Oxidation (M))ADQIVTV_ TM(1)ADQIVTV TM(61)ADQIVTV 0 0 1 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2495727539062 2 497.2497 992.484847 0.85689 0.00042609 -1.0148 -0.00050461 -0.15792 -7.8524E-05 497.24918455066626 46.312 0.53895 46.312 46.068 46.607 0 75 25 5 0 0 0 0.022193 1 25305 25305 61.357 15.337 1 16338000 64834 3211 43185 44153 75662 75662 571 -0.011696022822889063 TMADQIVTV 9 Oxidation (M) _TM(Oxidation (M))ADQIVTV_ TM(1)ADQIVTV TM(46)ADQIVTV 0 0 1 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2503051757812 2 497.2497 992.484847 1.3071 0.00064994 -0.55059 -0.00027378 0.75648 0.00037616 497.24944302523977 53.831 0.42364 48.027 47.849 48.272 -5.8042 37 25 2 0 0 0 0.047196 1 34054 34054 46.021 13.715 1 14681000 64835 3211 43185 44153 75663 75663 571 -0.011696022822889063 TMADQIVTV 9 Unmodified _TMADQIVTV_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.252197265625 2 489.252243 976.489932 0.84332 0.0004126 -0.21775 -0.00010654 0.62557 0.00030606 489.2521357268619 63.363 0.55693 57.187 56.949 57.506 -6.1757 62 31 3 0 0 0 0.07916 1 41062 41062 37.974 5.6685 1 22747000 64836 3211 43185 44154 75664 75664 0.0007470158031992469 TMAPWVKR 8 Unmodified _TMAPWVKR_ 0 0 0 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 ENSG00000117971|ENST00000261751|CHRNB4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2793579101562 2 494.77348 987.532406 0.85797 0.0004245 0.096668 4.7829E-05 0.95464 0.00047233 494.77401054845376 74.302 0.34074 73.826 73.613 73.954 -0.47588 16 13 2 0 0 0 8.7369 1 40569 40569 0.69038 0 1 362950 64837 3343 43186 44155 75665 75665 0.0381414149920829 TMAQPLVF 8 Unmodified _TMAQPLVF_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.7415771484375 2 453.741314 905.468075 0.64532 0.00029281 0.1916 8.6935E-05 0.83691 0.00037974 453.7411488991781 60.985 0.18841 60.985 60.907 61.095 0 12 7 2 0 0 0 0.80311 1 34033 34033 4.756 0 1 452680 64838 2474 43187 44156 75666 75666 0.011559416224145025 TMCMGPPMCNM 11 Unmodified _TMCMGPPMCNM_ 0 0 0 ENST00000263655.3_1_2:68520505-68520634:-|nuORF ENST00000263655.3_1_2:68520505-68520634:-|nuORF ENST00000263655.3_1_2:68520505-68520634:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 608.2115478515625 2 608.211511 1214.40847 NaN NaN NaN NaN NaN NaN NaN 9.5723 1 7.0903 6.5903 7.5903 -2.482 0 0 0 0.9435 1 4830 4830 0 0 1 64839 11295 43188 44157 75667 75667 -0.19015848033131988 TMCPHILRY 9 Carbamidomethyl (C),Oxidation (M) _TM(Oxidation (M))C(Carbamidomethyl (C))PHILRY_ TMC(1)PHILRY TM(1)CPHILRY TMC(82)PHILRY TM(82)CPHILRY 0 1 1 ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MSMS AL20221201_MKP_PDAC_01 4 603.7911376953125 2 603.791543 1205.56853 NaN NaN NaN NaN NaN NaN NaN 36.318 1 32.125 31.625 32.625 -4.1928 0 0 0 0.017438 1 21194 21194 81.89 61.437 1 64840 2203 43189 44158 75668 75668 219 378 -0.026027693862261003 TMCSDVSFYT 10 Unmodified _TMCSDVSFYT_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2324829101562 2 577.23065 1152.44675 0.86947 0.00050189 -0.87743 -0.00050648 -0.0079565 -4.5927E-06 577.2302797352058 51.136 0.24625 51.136 51.032 51.278 0 27 11 3 0 0 0 0.62068 1 28208 28208 10.074 1.4806 1 9354900 + 64841 20773 43190 44159 75669 75669 -0.12337856259296132 TMDIIHDGF 9 Unmodified _TMDIIHDGF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant;ENST00000424022.2_1_1:225594357-225599062:-|nuORF ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7418823242188 2 524.742042 1047.46953 0.58475 0.00030684 0.27007 0.00014172 0.85481 0.00044856 524.7417739118306 68.909 0.49526 68.909 68.656 69.152 0 50 21 3 0 0 0 0.2001 1 38427 38427 23.148 9.6405 1 1715800 64842 5556 43191 44160 75670 75670 -0.0523046907949265 TMECFSSCQF 10 Unmodified _TMECFSSCQF_ 0 0 0 REV__ENST00000471821.1_1_X:154019969-154033702:-|nuORF REV__ENST00000471821.1_1_X:154019969-154033702:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1721801757812 3 394.81366 1181.41915 0.72437 0.00028599 1.4422 0.0005694 2.1666 0.00085539 394.8146306382203 81.83 0.18163 81.335 81.21 81.392 -0.49521 9 6 2 0 0 0 0.72196 1 44801 44801 0.15932 0 1 235590 + 64843 27505 43192 44161 75671 75671 -0.16430082791180212 TMEIKGTVTEF 11 Unmodified _TMEIKGTVTEF_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3187255859375 2 628.315571 1254.61659 0.50487 0.00031722 1.494 0.00093872 1.9989 0.0012559 628.3161447725055 80.538 0.57745 74.362 74.135 74.713 -6.1757 50 31 2 0 0 0 0.44612 1 52788 52788 23.79 23.79 1 23287000 64844 1658 43193 44162 75672 75672 -0.0005341698522443039 TMFLLYFVFLI 11 Unmodified _TMFLLYFVFLI_ 0 0 0 nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1 nc|ENSG00000074621|O60721-3|SLC24A1 nc|ENSG00000074621|O60721-3|SLC24A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.9325866699219 3 469.597932 1405.77197 1.0795 0.00050693 -0.33858 -0.000159 0.74092 0.00034793 469.5977184458166 89.595 0.55774 83.419 83.127 83.685 -6.1757 92 30 4 0 0 0 0.54321 1 59277 59277 14.218 0 1 67021000 64845 1129 43194 44163 75673 75673 0.08531278607006243 TMFLWFML 8 Unmodified _TMFLWFML_ 0 0 0 ENST00000344096.3_1_12:68052792-68052999:+|nuORF ENST00000344096.3_1_12:68052792-68052999:+|nuORF ENST00000344096.3_1_12:68052792-68052999:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7693481445312 2 544.769017 1087.52348 NaN NaN NaN NaN NaN NaN NaN 77.716 1 77.716 77.216 78.216 0 0 0 0 0.97444 1 43204 43204 0.79363 0 1 64846 12010 43195 44164 75674 75674 -0.016779681814796277 TMFYPLVTF 9 Oxidation (M) _TM(Oxidation (M))FYPLVTF_ TM(1)FYPLVTF TM(48)FYPLVTF 0 0 1 nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4;nc|ENSG00000204385|Q53GD3-3|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 nc|ENSG00000204385|Q53GD3-4|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.7815551757812 2 567.780636 1133.54672 2.1508 0.0012212 -1.1948 -0.00067837 0.95598 0.00054279 567.7797376806302 94.411 0.35583 94.425 94.212 94.568 0.014244 37 12 4 0 0 0 0.042911 1 52423 52423 48.346 23.672 1 6575300 64847 10275 43196 44165 75675 75675 1670 -0.014712508631873789 TMGSNALSF 9 Oxidation (M) _TM(Oxidation (M))GSNALSF_ TM(1)GSNALSF TM(65)GSNALSF 0 0 1 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 943.4210815429688 1 943.418959 942.411682 0.13215 0.00012467 0.36612 0.00034541 0.49827 0.00047008 943.4191737418428 47.954 0.24108 47.954 47.81 48.051 0 19 11 2 0 0 0 0.018301 1 26237 26237 65.235 36.153 1 2421900 + 64848 199 43197 44166 75676 75676 16 -0.061827310049238804 TMHDYAPLV 9 Oxidation (M) _TM(Oxidation (M))HDYAPLV_ TM(1)HDYAPLV TM(67)HDYAPLV 0 0 1 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7495727539062 2 531.749867 1061.48518 -0.27334 -0.00014535 -0.7111 -0.00037813 -0.98444 -0.00052348 531.7492816698925 41.191 0.32236 41.191 41.082 41.404 0 30 15 3 0 0 0 0.016184 1 22176 22176 67.344 44.195 1 5175300 64849 1673 43198 44167 75677 75677 281 -0.043101825624717094 TMIEICEKL 9 Carbamidomethyl (C),Oxidation (M) _TM(Oxidation (M))IEIC(Carbamidomethyl (C))EKL_ TMIEIC(1)EKL TM(1)IEICEKL TMIEIC(83)EKL TM(83)IEICEKL 0 1 1 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7880249023438 2 576.785592 1151.55663 1.2921 0.00074529 2.8652 0.0016526 4.1574 0.0023979 576.7873230100605 54.133 0.43242 48.268 48.099 48.531 -5.8653 35 24 2 0 0 0 0.0093064 1 34321 34321 83.429 54.347 1 12114000 64850 2762 43199 44168 75678 75678 282 480 -0.013084309201076394 TMIEICEKL 9 Carbamidomethyl (C) _TMIEIC(Carbamidomethyl (C))EKL_ TMIEIC(1)EKL TMIEIC(59)EKL 0 1 0 nc|ENSG00000111142|P50579-3|METAP2;nc|ENSG00000111142|P50579-2|METAP2;ENSG00000111142|ENST00000323666|METAP2 nc|ENSG00000111142|P50579-3|METAP2 nc|ENSG00000111142|P50579-3|METAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.789306640625 2 568.788135 1135.56172 2.1999 0.0012513 -0.88346 -0.0005025 1.3164 0.00074878 568.7874757933358 62.782 0.47845 56.606 56.398 56.877 -6.1757 39 23 2 0 0 0 0.024189 1 40554 40554 59.368 33.969 1 20211000 64851 2762 43199 44169 75679 75679 282 -0.0006412705749880843 TMIKKKKRRK 10 Unmodified _TMIKKKKRRK_ 0 0 0 ENST00000492143.5_1_7:148514953-148515082:-|nuORF;ENST00000460911.5_1_7:148514453-148515082:-|nuORF ENST00000492143.5_1_7:148514953-148515082:-|nuORF ENST00000492143.5_1_7:148514953-148515082:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 658.8740234375 2 658.937191 1315.85983 NaN NaN NaN NaN NaN NaN NaN 98.312 1 98.284 97.784 98.784 -0.027061 0 0 0 1.0019 1 54608 54608 0.45834 0.057624 1 64852 13647 43200 44170 75680 75680 0.21453337040975384 TMKLIIEL 8 Unmodified _TMKLIIEL_ 0 0 0 REV__nc|ENSG00000151067|Q13936-2|CACNA1C REV__nc|ENSG00000151067|Q13936-2|CACNA1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.792724609375 2 480.793546 959.57254 NaN NaN NaN NaN NaN NaN NaN 100.79 1 100.74 100.24 101.24 -0.04216 0 0 0 0.97444 1 55989 55989 2.8892 0 1 + 64853 29702 43201 44171 75681 75681 0.09113643379100722 TMLGKFYHF 9 Unmodified _TMLGKFYHF_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8606872558594 3 381.860039 1142.55829 0.56031 0.00021396 0.73454 0.00028049 1.2949 0.00049445 381.860552081566 84.865 0.33704 78.69 78.483 78.82 -6.1757 35 19 2 0 0 0 0.10247 1 55833 55833 32.786 22.635 1 12001000 64854 7094 43202 44172 75682 75682 -0.007290090491778756 TMLMECSMGP 10 Unmodified _TMLMECSMGP_ 0 0 0 ENST00000435880.6_1_2:70189419-70189572:-|nuORF ENST00000435880.6_1_2:70189419-70189572:-|nuORF ENST00000435880.6_1_2:70189419-70189572:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2176513671875 2 550.218174 1098.42179 NaN NaN NaN NaN NaN NaN NaN 6.0027 1 5.9252 5.4252 6.4252 -0.07749 0 0 0 1.0061 1 2962 2962 0 0 1 64855 13324 43203 44173 75683 75683 -0.12347950657840556 TMLNDINQK 9 Unmodified _TMLNDINQK_ 0 0 0 REV__nc|ENSG00000164944|Q69YN4-2|VIRMA REV__nc|ENSG00000164944|Q69YN4-2|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7744140625 2 538.773874 1075.53319 0.34395 0.00018531 0.41325 0.00022265 0.7572 0.00040796 538.7740574417724 87.474 0.48668 86.97 86.708 87.195 -0.50423 72 21 4 0 0 0 0.27545 1 47869 47869 25.399 3.6527 1 12679000 + 64856 21964 43204 44174 75684 75684 -0.0015510864241150557 TMLNDINQK 9 Unmodified _TMLNDINQK_ 0 0 0 REV__nc|ENSG00000164944|Q69YN4-2|VIRMA REV__nc|ENSG00000164944|Q69YN4-2|VIRMA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.773874 1075.53319 0.34395 0.00018531 0.41325 0.00022265 0.7572 0.00040796 538.7740574417724 87.474 0.48668 86.97 86.708 87.195 -0.50423 0.018799 0.00011436 NaN 25.399 72 21 4 NaN NaN NaN NaN 0 NaN NaN 0 12679000 + 64857 21964 43204 44174 -0.0015510864241150557 TMLQKQHQR 9 Unmodified _TMLQKQHQR_ 0 0 0 REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1 REV__nc|ENSG00000160551|Q7L7X3-3|TAOK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5504455566406 3 390.545113 1168.61351 0.99194 0.0003874 0.46331 0.00018094 1.4553 0.00056834 390.5441341535539 18.372 0.33751 15.75 15.594 15.931 -2.6215 143 29 6 0 0 0 0.34134 1 9732 9732 15.248 0.29132 1 35145000 + 64858 21550 43205 44175 75685 75685 0.035947974713053554 TMMFTFHKF 9 2 Oxidation (M) _TM(Oxidation (M))M(Oxidation (M))FTFHKF_ TM(1)M(1)FTFHKF TM(68)M(68)FTFHKF 0 0 2 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8524475097656 3 407.852555 1220.53584 0.27547 0.00011235 -0.57358 -0.00023394 -0.29811 -0.00012159 407.8524600729927 43.178 0.5349 43.162 42.864 43.399 -0.015667 76 24 4 0 0 0 0.015688 3 23239 23033;23135;23239 67.838 63.309 1 34792000 64859 9996 43206 44176 75686;75687;75688 75688 1621;1622 -0.06560976509103966 TMMFTFHKF 9 Unmodified _TMMFTFHKF_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.1878662109375 3 397.189279 1188.54601 NaN NaN NaN NaN NaN NaN NaN 84.643 1 78.467 77.967 78.967 -6.1757 0 0 0 0.18351 1 55700 55700 24.882 15.905 1 64860 9996 43206 44177 75689 75689 -0.04072368783886304 TMMFTFHKF 9 Unmodified _TMMFTFHKF_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.1887512207031 3 397.189279 1188.54601 NaN NaN NaN NaN NaN NaN NaN 84.841 1 78.665 78.165 79.165 -6.1757 0 0 0 0.34649 1 55836 55836 16.566 13.831 1 64861 9996 43206 44177 75690 75690 -0.04072368783886304 TMMFTFHKF 9 Unmodified _TMMFTFHKF_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.188232421875 3 397.189279 1188.54601 NaN NaN NaN NaN NaN NaN NaN 85.052 1 78.877 78.377 79.377 -6.1757 0 0 0 0.27852 1 55990 55990 30.703 21.727 1 64862 9996 43206 44177 75691 75691 -0.04072368783886304 TMMVFHLTF 9 Unmodified _TMMVFHLTF_ 0 0 0 ENSG00000171936|ENST00000641646|OR10H3 ENSG00000171936|ENST00000641646|OR10H3 ENSG00000171936|ENST00000641646|OR10H3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8165893554688 2 563.774831 1125.53511 -0.014104 -7.9517E-06 -0.59558 -0.00033577 -0.60968 -0.00034372 563.7756796667619 37.323 0.35979 37.052 36.821 37.181 -0.27133 39 14 4 0 0 0 0.19891 1 19533 19533 11.64 0.81637 1 4381800 64863 8161 43207 44178 75692 75692 -0.022637711581637632 TMNCCENCGSY 11 Unmodified _TMNCCENCGSY_ 0 0 0 ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ENSG00000163867|ENST00000357182|ZMYM6 ENST00000493328.5_1_1:35455862-35480681:-|nuORF ENST00000493328.5_1_1:35455862-35480681:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7980041503906 3 408.797793 1223.37155 -1.0269 -0.00041981 2.2784 0.0009314 1.2515 0.00051159 408.7985810418555 32.792 0.21383 32.792 32.714 32.927 0 17 10 2 0 0 0 0.7326 1 17176 17176 0.40827 0 1 3999100 64864 7085 43208 44179 75693 75693 -0.23120105053658335 TMNCCENCGSY 11 Unmodified _TMNCCENCGSY_ 0 0 0 ENST00000493328.5_1_1:35455862-35480681:-|nuORF;nc|ENSG00000163867|O95789-1|ZMYM6;ENSG00000163867|ENST00000357182|ZMYM6 ENST00000493328.5_1_1:35455862-35480681:-|nuORF ENST00000493328.5_1_1:35455862-35480681:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 612.30712890625 2 612.693051 1223.37155 1.1555 0.00070796 1.8006 0.0011032 2.9561 0.0018112 612.6939201185849 37.537 0.28516 33.254 33.102 33.387 -4.2835 24 16 2 0 0 0 0.30565 1 22069 22069 0.35063 0.35063 1 5909500 64865 7085 43208 44179 75694 75694 -0.23120105053658335 TMPDLYHLL 9 Unmodified _TMPDLYHLL_ 0 0 0 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1;ENST00000373473.5_1_20:36374873-36393614:+|nuORF nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.78515625 2 551.78371 1101.55287 0.60545 0.00033408 -0.032114 -1.772E-05 0.57334 0.00031636 551.7834627439049 83.94 0.30555 83.441 83.266 83.572 -0.49961 31 12 3 0 0 0 0.078417 1 45901 45901 38.151 18.712 1 2346000 64866 4450 43209 44180 75695 75695 0.006152673683345711 TMPDLYHLL 9 Unmodified _TMPDLYHLL_ 0 0 0 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1;ENSG00000132792|ENST00000361383|CTNNBL1;ENST00000373473.5_1_20:36374873-36393614:+|nuORF nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 nc|ENSG00000132792|Q8WYA6-4|CTNNBL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.783935546875 2 551.78371 1101.55287 1.2829 0.00070787 -1.2982 -0.00071634 -0.01535 -8.47E-06 551.7831586320466 97.761 0.37877 91.585 91.421 91.8 -6.1757 58 24 4 0 0 0 0.045537 2 64732 64732;64878 46.921 20.58 1 130010000 64867 4450 43209 44180 75696;75697 75696 0.006152673683345711 TMRLFEEY 8 Unmodified _TMRLFEEY_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2841796875 2 544.757692 1087.50083 0.28654 0.0001561 -0.84806 -0.00046199 -0.56151 -0.00030589 544.7566032298508 71.612 0.23959 71.136 70.976 71.216 -0.47609 15 9 2 0 0 0 0.80624 1 39135 39135 2.8892 0.58649 1 411600 + 64868 23192 43210 44181 75698 75698 -0.03941896045421345 TMRVKERQH 9 Unmodified _TMRVKERQH_ 0 0 0 REV__ENST00000504196.1_1_5:57754793-57755897:-|nuORF REV__ENST00000504196.1_1_5:57754793-57755897:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5489196777344 3 395.548746 1183.62441 0.56978 0.00022538 0.43621 0.00017254 1.006 0.00039792 395.5487709381328 58.219 0.29499 58.158 58.038 58.333 -0.060722 23 14 2 0 0 0 0.59218 1 31722 31722 0.96228 0.33545 1 2769300 + 64869 28050 43211 44182 75699 75699 0.03994199845578805 TMSAVITIA 9 Unmodified _TMSAVITIA_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4974365234375 1 906.496481 905.489204 -0.62136 -0.00056326 1.2181 0.0011042 0.59669 0.00054089 906.4976320180555 48.748 0.31872 48.748 48.555 48.874 0 34 14 3 0 0 0 0.06187 1 26830 26830 42.095 3.9434 1 8119500 + 64870 21044 43212 44183 75700 75700 0.032679069312507636 TMSAVITIA 9 Unmodified _TMSAVITIA_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4976806640625 1 906.496481 905.489204 -0.11057 -0.00010023 0.83504 0.00075696 0.72447 0.00065673 906.4976199382162 49.002 0.29728 48.63 48.48 48.778 -0.37172 32 14 3 0 0 0 0.06187 1 26394 26394 42.095 3.9434 1 4998500 + 64871 21044 43212 44183 75701 75701 0.032679069312507636 TMSESMNDQE 10 Unmodified _TMSESMNDQE_ 0 0 0 ENSG00000182923|ENST00000675561|CEP63 ENSG00000182923|ENST00000675561|CEP63 ENSG00000182923|ENST00000675561|CEP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.1456604003906 3 391.146244 1170.4169 -0.056894 -2.2254E-05 -2.4357 -0.0009527 -2.4926 -0.00097496 391.4795212171983 15.345 0.25014 15.35 15.25 15.5 0.0057764 21 15 2 0 0 0 0.71981 1 7656 7656 0.69767 0.53834 1 659590 64872 9100 43213 44184 75702 75702 -0.16148839995298658 TMSGVTTCLRF 11 Carbamidomethyl (C) _TMSGVTTC(Carbamidomethyl (C))LRF_ TMSGVTTC(1)LRF TMSGVTTC(50)LRF 0 1 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8070678710938 2 636.80739 1271.60023 0.87954 0.00056009 1.3497 0.00085949 2.2292 0.0014196 636.808017817239 63.608 0.41351 57.432 57.306 57.719 -6.1757 29 22 2 0 0 0 0.055321 1 41168 41168 49.742 9.5027 1 9752900 64873 9643;9783;4920;8299 43214 44185 75703 75703 510 -0.024708214230031444 TMSGVTTCLRF 11 Carbamidomethyl (C),Oxidation (M) _TM(Oxidation (M))SGVTTC(Carbamidomethyl (C))LRF_ TMSGVTTC(1)LRF TM(1)SGVTTCLRF TMSGVTTC(73)LRF TM(73)SGVTTCLRF 0 1 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MSMS AL20221201_MKP_PDAC_01 4 644.8054809570312 2 644.804848 1287.59514 NaN NaN NaN NaN NaN NaN NaN 56.165 1 50.188 49.688 50.688 -5.9769 0 0 0 0.016898 1 35819 35819 73.196 50.538 1 64874 9643;9783;4920;8299 43214 44186 75704 75704 510 896 -0.037151252856119754 TMSHNNVDRYL 11 Unmodified _TMSHNNVDRYL_ 0 0 0 REV__nc|ENSG00000005810|O75592-2|MYCBP2 REV__nc|ENSG00000005810|O75592-2|MYCBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.8819885253906 3 450.547071 1348.61938 NaN NaN NaN NaN NaN NaN NaN 17.686 1 17.7 17.2 18.2 0.013865 0 0 0 0.94307 1 8813 8813 0.08335 0 1 + 64875 16974 43215 44187 75705 75705 -0.04098148807679536 TMSYETLWRK 10 Unmodified _TMSYETLWRK_ 0 0 0 ENST00000504411.1_1_5:135396881-135398912:+|nuORF ENST00000504411.1_1_5:135396881-135398912:+|nuORF ENST00000504411.1_1_5:135396881-135398912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.8878479003906 3 438.888546 1313.64381 NaN NaN NaN NaN NaN NaN NaN 68.313 1 68.313 67.813 68.813 0 0 0 0 1.0024 1 38083 38083 0.13989 0.056541 1 64876 14494 43216 44188 75706 75706 -0.0004688865419666399 TMTCRVERFIE 11 Unmodified _TMTCRVERFIE_ 0 0 0 ENST00000549679.5_1_12:53896962-53899929:+|nuORF;ENST00000548971.5_1_12:53896913-53899929:+|nuORF;nc|ENSG00000139546|Q15633-2|TARBP2;ENSG00000139546|ENST00000266987|TARBP2;ENST00000549572.5_1_12:53898463-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF ENST00000549679.5_1_12:53896962-53899929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.8423461914062 2 692.839222 1383.66389 0.35013 0.00024258 1.012 0.00070114 1.3621 0.00094373 692.8398639640578 48.949 0.29851 48.906 48.772 49.07 -0.04369 45 14 4 0 0 0 0.73506 1 26519 26519 0.96228 0.50394 1 16468000 64877 5165 43217 44189 75707 75707 -0.012594609858524564 TMTLARVCLC 10 Unmodified _TMTLARVCLC_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;ENST00000588652.5_1_19:45854889-45860860:-|nuORF;ENST00000391942.6_1_19:45854889-45865127:-|nuORF ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7769775390625 2 555.777047 1109.53954 0.92644 0.00051489 -0.044628 -2.4803E-05 0.88181 0.00049009 555.777046875144 80.267 0.58517 74.091 73.806 74.391 -6.1757 82 33 3 0 0 0 0.50944 1 52526 52526 15.847 1.0089 1 44590000 64878 2250 43218 44190 75708 75708 -0.010846300068806158 TMVDRIEEV 9 Unmodified _TMVDRIEEV_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MSMS AL20221201_MKP_PDAC_01 4 546.2755737304688 2 546.273706 1090.53286 NaN NaN NaN NaN NaN NaN NaN 49.78 1 44.241 43.741 44.741 -5.5391 0 0 0 0.14754 1 31136 31136 37.075 13.054 1 64879 1109 43219 44191 75709 75709 -0.008785283622728457 TMVTPEPPSTL 11 Unmodified _TMVTPEPPSTL_ 0 0 0 REV__nc|ENSG00000119699|P10600-2|TGFB3 REV__nc|ENSG00000119699|P10600-2|TGFB3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.5537719726562 3 391.533768 1171.57948 1.311 0.00051329 -0.30066 -0.00011772 1.0103 0.00039557 391.5338244655219 87.243 0.23478 81.067 80.911 81.146 -6.1757 16 12 2 0 0 0 0.29698 1 57531 57531 4.4062 0 1 8307900 + 64880 19204 43220 44192 75710 75710 0.0005491146903295885 TMYFKRAPR 9 Unmodified _TMYFKRAPR_ 0 0 0 ENST00000476973.2_9:69243634-69261296:-|nuORF;ENST00000470192.1_9:69256791-69261296:-|nuORF ENST00000476973.2_9:69243634-69261296:-|nuORF ENST00000476973.2_9:69243634-69261296:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5448608398438 3 390.546454 1168.61753 0.99194 0.0003874 -2.9701 -0.00116 -1.9782 -0.00077257 390.5441341535539 18.372 0.33751 15.75 15.594 15.931 -2.6215 143 29 6 0 0 0 0.42049 1 9742 9742 11.495 4.4576 1 35145000 64881 13993 43221 44193 75711 75711 0.039968869650010674 TMYKEITLW 9 Unmodified _TMYKEITLW_ 0 0 0 REV__nc|ENSG00000119121|Q9BX84-4|TRPM6 REV__nc|ENSG00000119121|Q9BX84-4|TRPM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5390319824219 3 395.538854 1183.59473 NaN NaN NaN NaN NaN NaN NaN 19.946 1 19.954 19.454 20.454 0.0078487 0 0 0 0.85798 1 10160 10160 0.23584 0.076522 1 + 64882 19180 43222 44194 75712 75712 0.010278230568701474 TMYYLRFIF 9 Unmodified _TMYYLRFIF_ 0 0 0 ENST00000550023.5_1_12:75900038-75900188:-|nuORF ENST00000550023.5_1_12:75900038-75900188:-|nuORF ENST00000550023.5_1_12:75900038-75900188:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.82861328125 2 627.323002 1252.63145 0.55171 0.0003461 2.3156 0.0014526 2.8673 0.0017987 627.8266857710857 45.869 0.24406 40.914 40.774 41.018 -4.9549 33 15 3 0 0 0 0.35911 1 28212 28212 10.074 0 1 14201000 64883 15160 43223 44195 75713 75713 0.015241196734450568 TNAAAHRDRGG 11 Unmodified _TNAAAHRDRGG_ 0 0 0 ENST00000553932.5_1_14:39308236-39359955:-|nuORF;ENST00000556116.1_1_14:39308236-39410746:-|nuORF ENST00000553932.5_1_14:39308236-39359955:-|nuORF ENST00000553932.5_1_14:39308236-39359955:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2789916992188 2 563.279035 1124.54352 NaN NaN NaN NaN NaN NaN NaN 6.3251 1 6.3251 5.8251 6.8251 0 0 0 0 0.9435 1 3039 3039 0 0 1 64884 15200 43224 44196 75714 75714 -0.013773648729738852 TNAENEFVTIK 11 Unmodified _TNAENEFVTIK_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3219604492188 2 633.322242 1264.62993 -0.10683 -6.7659E-05 0.12447 7.8828E-05 0.017635 1.1168E-05 633.3222662846538 41.972 0.24178 41.972 41.864 42.105 0 29 12 3 0 0 0 4.5211E-07 1 22671 22671 105.35 33.637 1 7552200 + 64885 7667 43225 44197 75715 75715 0.008201571183917622 TNATLAASAWL 11 Unmodified _TNATLAASAWL_ 0 0 0 ENSG00000171561|ENST00000641541|OR2AT4 ENSG00000171561|ENST00000641541|OR2AT4 ENSG00000171561|ENST00000641541|OR2AT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5332946777344 3 373.532868 1117.57677 1.7047 0.00063675 -0.065354 -2.4412E-05 1.6393 0.00061234 373.53276755640957 36.061 0.48423 31.869 31.598 32.082 -4.1928 83 29 4 0 0 0 0.63851 1 21032 21032 7.4771 3.0709 1 67285000 64886 8115 43226 44198 75716 75716 0.022688241263495 TNCVFKSQEDY 11 Unmodified _TNCVFKSQEDY_ 0 0 0 REV__ENSG00000182963|ENST00000592524|GJC1 REV__ENSG00000182963|ENST00000592524|GJC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.7915649414062 2 667.290085 1332.56562 -0.051094 -3.4095E-05 0.23645 0.00015778 0.18535 0.00012368 667.2905243531889 39.917 0.45255 39.917 39.616 40.068 0 74 22 4 0 0 0 0.65108 1 21320 21320 8.7454 0 1 16637000 + 64887 23310 43227 44199 75717 75717 -0.08736366030052523 TNCVFKSQEDY 11 Unmodified _TNCVFKSQEDY_ 0 0 0 REV__ENSG00000182963|ENST00000592524|GJC1 REV__ENSG00000182963|ENST00000592524|GJC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.7915649414062 2 667.290085 1332.56562 -0.051094 -3.4095E-05 0.23645 0.00015778 0.18535 0.00012368 667.2905243531889 39.917 0.45255 39.917 39.616 40.068 0 74 22 4 0 0 0 0.29698 1 21320 21320 8.7454 0 1 16637000 + 64888 23310 43227 44199 75718 75718 -0.08736366030052523 TNDTGFLSF 9 Unmodified _TNDTGFLSF_ 0 0 0 nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 nc|ENSG00000155052|Q8WYK1|CNTNAP5 MSMS AL20221201_MKP_PDAC_01 4 501.2323608398438 2 501.232364 1000.45018 NaN NaN NaN NaN NaN NaN NaN 45.923 1 40.968 40.468 41.468 -4.9549 0 0 0 0.53226 1 28280 28280 14.838 0.93222 1 64889 6364 43228 44200 75719 75719 -0.05003102098760337 TNDTTVNL 8 Unmodified _TNDTTVNL_ 0 0 0 REV__ENSG00000117586|ENST00000281834|TNFSF4 REV__ENSG00000117586|ENST00000281834|TNFSF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4301147460938 1 877.426152 876.418876 1.5183 0.0013322 0.80421 0.00070563 2.3225 0.0020378 877.4287547816942 108.65 0.47056 102.47 102.21 102.68 -6.1757 134 70 3 0 0 0 0.81007 1 72463 72463 0.6015 0 1 3570500 + 64890 19114 43229 44201 75720 75720 -0.024276751328443424 TNDYITWYQ 9 Unmodified _TNDYITWYQ_ 0 0 0 nc|ENSG00000211778|A0A0B4J268|TRAV4 nc|ENSG00000211778|A0A0B4J268|TRAV4 nc|ENSG00000211778|A0A0B4J268|TRAV4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.8490600585938 3 401.848744 1202.5244 NaN NaN NaN NaN NaN NaN NaN 1.524 1 1.524 1.024 2.024 0 0 0 0 0.84737 1 745 745 0.96228 0 1 64891 16529 43230 44202 75721 75721 -0.0687575900722095 TNEFPKVERFR 11 Unmodified _TNEFPKVERFR_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.4430847167969 4 356.442663 1421.74155 1.6917 0.00060301 -0.78843 -0.00028103 0.90331 0.00032198 356.4423961847131 19.477 0.33791 16.82 16.649 16.987 -2.6564 84 31 3 0 0 0 0.73451 1 10360 10360 1.0136 0.31591 1 23738000 64892 1684 43231 44203 75722 75722 0.04754636266147827 TNEKAKIYQ 9 Unmodified _TNEKAKIYQ_ 0 0 0 REV__ENSG00000072501|ENST00000322213|SMC1A REV__ENSG00000072501|ENST00000322213|SMC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7955932617188 2 547.795663 1093.57677 0.33853 0.00018544 0.21347 0.00011694 0.55199 0.00030238 547.7956333466402 30.837 0.29318 30.734 30.571 30.864 -0.10269 27 11 4 0 0 0 0.46501 1 15981 15981 9.3831 0.63772 1 18379000 + 64893 17517 43232 44204 75723 75723 0.03372824126358864 TNETKYVVP 9 Unmodified _TNETKYVVP_ 0 0 0 REV__ENST00000222567.5_1_7:19737821-19737866:-|nuORF REV__ENST00000222567.5_1_7:19737821-19737866:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2894287109375 2 525.776939 1049.53933 -0.055267 -2.9058E-05 2.908 0.001529 2.8527 0.0014999 525.7783111499291 25.239 0.29469 25.239 25.051 25.346 0 26 14 2 0 0 0 0.20727 1 12831 12831 7.9102 0.62092 1 892480 + 64894 24763 43233 44205 75724 75724 0.016537328607682866 TNEVELEHV 9 Unmodified _TNEVELEHV_ 0 0 0 REV__ENSG00000196169|ENST00000389916|KIF19 REV__ENSG00000196169|ENST00000389916|KIF19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2610473632812 2 535.261653 1068.50875 NaN NaN NaN NaN NaN NaN NaN 62.356 1 62.356 61.856 62.856 0 0 0 0 0.26667 1 34778 34778 26.884 0 1 + 64895 23800 43234 44206 75725 75725 -0.022760455242632815 TNEYNPLN 8 Unmodified _TNEYNPLN_ 0 0 0 REV__ENST00000466561.1_1_1:17313027-17318334:-|nuORF REV__ENST00000466561.1_1_1:17313027-17318334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7219848632812 2 482.722164 963.429775 -0.17684 -8.5366E-05 -0.57665 -0.00027836 -0.7535 -0.00036373 482.72194085595424 44.722 0.17685 44.722 44.572 44.749 0 12 9 2 0 0 0 0.28079 1 24328 24328 57.471 2.6978 1 11366000 + 64896 21477 43235 44207 75726 75726 -0.05340272758564879 TNFEDRNAF 9 Unmodified _TNFEDRNAF_ 0 0 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2488403320312 2 557.25162 1112.48869 -0.21893 -0.000122 -1.9205 -0.0010702 -2.1394 -0.0011922 557.2505673885964 34.705 0.24809 34.705 34.579 34.827 0 37 12 4 0 0 0 0.062454 1 18305 18305 41.956 24.843 1 53103000 64897 10896;775 43236 44208 75727 75727 -0.0630579646424394 TNFEDRNAF 9 Unmodified _TNFEDRNAF_ 0 0 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.2943725585938 2 557.25162 1112.48869 1.0039 0.00055945 1.4941 0.0008326 2.4981 0.001392 557.2520069088628 39.278 0.35446 34.827 34.704 35.058 -4.4509 43 21 3 0 0 0 0.17729 1 23362 23362 11.495 4.2055 1 54592000 64898 10896;775 43236 44208 75728 75728 -0.0630579646424394 TNFLNNSDAKE 11 Unmodified _TNFLNNSDAKE_ 0 0 0 REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.7960205078125 2 626.793849 1251.57314 0.88785 0.0005565 -0.24365 -0.00015272 0.6442 0.00040378 626.7939218442655 89.763 0.80634 83.587 83.201 84.008 -6.1757 96 44 3 0 0 0 0.29175 1 59242 59242 27.223 3.2027 1 23397000 + 64899 19399 43237 44209 75729 75729 -0.04257890438157119 TNGIAKAA 8 Unmodified _TNGIAKAA_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2130432128906 2 373.213778 744.413003 0.32683 0.00012198 -1.2449 -0.00046463 -0.91812 -0.00034265 373.2132219171966 69.599 0.49098 69.63 69.392 69.883 0.030914 58 27 3 0 0 0 0.80975 2 38158 38158;38260 0.79363 0 1 31373000 + 64900 17184 43238 44210 75730;75731 75730 0.030572711461331892 TNGIAKAA 8 Unmodified _TNGIAKAA_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 373.213778 744.413003 -0.036029 -1.3447E-05 -1.2901 -0.0004815 -1.3262 -0.00049494 373.2131111413629 69.97 0.25443 69.491 69.314 69.568 -0.47903 -0.06956 -2.5266E-05 NaN 0.79363 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2338800 + 64901 17184 43238 44210 0.030572711461331892 TNHIHSWG 8 Unmodified _TNHIHSWG_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2256469726562 2 476.225208 950.435863 0.70393 0.00033523 -0.61047 -0.00029072 0.093461 4.4508E-05 476.22483049662935 28.743 0.23168 28.681 28.554 28.786 -0.062159 19 9 3 0 0 0 0.54555 1 14823 14823 30.637 0.41173 1 7297700 + 64902 21196 43239 44211 75732 75732 -0.04133709736379387 TNHIIIPSY 9 Unmodified _TNHIIIPSY_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;ENST00000485737.1_1_3:47721925-47742822:-|nuORF ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1941223144531 3 353.194075 1056.5604 -0.46403 -0.00016389 0.91222 0.00032219 0.44819 0.0001583 353.1943940570982 28.948 0.16247 28.948 28.839 29.002 0 18 7 3 0 0 0 0.52844 1 14977 14977 9.544 3.3521 1 1070300 64903 8329 43240 44212 75733 75733 0.03437742960295509 TNHIIIPSY 9 Unmodified _TNHIIIPSY_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;ENST00000485737.1_1_3:47721925-47742822:-|nuORF ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1576843261719 3 353.194075 1056.5604 NaN NaN NaN NaN NaN NaN NaN 95.947 1 95.622 95.122 96.122 -0.32487 0 0 0 0.85852 1 52403 52403 0.20686 0 1 64904 8329 43240 44212 75734 75734 0.03437742960295509 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3277587890625 1 803.327835 802.320559 -0.0076163 -6.1184E-06 0.35531 0.00028543 0.34769 0.00027931 803.328227062564 77.694 0.37811 77.694 77.544 77.922 0 48 20 3 0 0 0 0.80722 2 43137 43137;43241 2.3027 0 1 4895500 + 64905 20798 43241 44213 75735;75736 75735 -0.08850858658024663 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.3268432617188 1 803.327835 802.320559 -0.0073071 -5.87E-06 1.2403 0.00099636 1.233 0.00099049 803.3289691083853 79.382 0.4459 79.382 79.142 79.588 0 43 18 3 0 0 0 0.80722 2 44021 44021;44123 2.3027 0 1 4387300 + 64906 20798 43241 44213 75737;75738 75737 -0.08850858658024663 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1677856445312 2 402.167556 802.320559 1.3075 0.00052584 0.16973 6.8259E-05 1.4772 0.0005941 402.1674102623418 86.785 0.53733 80.609 80.338 80.876 -6.1757 72 28 3 0 0 0 0.80722 2 57088 57088;57208 2.3027 0 1 41361000 + 64907 20798 43241 44213 75739;75740 75739 -0.08850858658024663 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1672058105469 2 402.167556 802.320559 1.2702 0.00051085 0.90449 0.00036376 2.1747 0.00087461 402.1676115216206 88.363 0.59469 82.187 81.975 82.569 -6.1757 88 32 3 0 0 0 0.80722 3 58204 58204;58329;58459 2.3027 0 1 37689000 + 64908 20798 43241 44213 75741;75742;75743 75741 -0.08850858658024663 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 803.327835 802.320559 -0.0076163 -6.1184E-06 0.35531 0.00028543 0.34769 0.00027931 803.328227062564 77.694 0.37811 77.694 77.544 77.922 0 0 0 NaN 2.3027 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 4895500 + 64909 20798 43241 44213 -0.08850858658024663 TNHSSSNG 8 Unmodified _TNHSSSNG_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 803.327835 802.320559 0.58192 0.00046748 0.17549 0.00014097 0.75741 0.00060845 803.3279017122828 79.955 0.2871 79.465 79.377 79.665 -0.48932 0.041583 -0.00063015 NaN 2.3027 12 10 2 NaN NaN NaN NaN 0 NaN NaN 0 900800 + 64910 20798 43241 44213 -0.08850858658024663 TNHYEQCWKYY 11 Unmodified _TNHYEQCWKYY_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 767.8250122070312 2 767.824626 1533.6347 0.40559 0.00031142 -2.4146 -0.001854 -2.009 -0.0015426 767.8233245482555 60.211 0.22891 60.211 60.116 60.345 0 15 9 2 0 0 0 0.73992 1 33603 33603 0.35063 0 1 1017500 64911 10169 43242 44214 75744 75744 -0.11077282010501222 TNIDVQTEF 9 Unmodified _TNIDVQTEF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7550048828125 2 533.756204 1065.49785 0.55674 0.00029717 -0.22219 -0.0001186 0.33455 0.00017857 533.7561727648226 53.316 0.38689 53.316 53.099 53.486 0 39 16 3 0 0 0 0.20428 1 29622 29622 22.736 4.5899 1 16284000 64912 8967 43243 44215 75745 75745 -0.03227447898552782 TNIDVQTEF 9 Unmodified _TNIDVQTEF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7552490234375 2 533.756204 1065.49785 1.0722 0.0005723 -1.5774 -0.00084196 -0.5052 -0.00026965 533.7551663421109 61.513 0.39157 55.343 55.113 55.505 -6.1701 33 19 2 0 0 0 0.011671 2 39557 39557;39684 75.761 17.082 1 36589000 64913 8967 43243 44215 75746;75747 75746 -0.03227447898552782 TNKIHRKK 8 Unmodified _TNKIHRKK_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|145|3|sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|145|3|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8231811523438 2 512.82235 1023.63015 1.4443 0.00074069 0.98368 0.00050445 2.428 0.0012451 512.8228019495036 106.35 0.47731 100.17 100.06 100.54 -6.1757 111 84 2 0 0 0 0.80975 1 71152 71152 0.79363 0.10326 1 2703000 + 64914 29372 43244 44216 75748 75748 0.11927666419569505 TNKRRMGL 8 Unmodified _TNKRRMGL_ 0 0 0 REV__ENSG00000173890|ENST00000355897|GPR160 REV__ENSG00000173890|ENST00000355897|GPR160 MSMS AL20221201_MKP_PDAC_01 4 488.2785339355469 2 488.27946 974.544368 NaN NaN NaN NaN NaN NaN NaN 21.422 1 18.687 18.187 19.187 -2.7348 0 0 0 0.92941 1 11470 11470 14.838 1.2234 1 + 64915 22756 43245 44217 75749 75749 0.056077582424109096 TNLARKRIP 9 Unmodified _TNLARKRIP_ 0 0 0 ENSG00000188691|ENST00000532411|OR56A5;ENSG00000183389|ENST00000641156|OR56A4 ENSG00000188691|ENST00000532411|OR56A5 ENSG00000188691|ENST00000532411|OR56A5 MSMS AL20221201_MKP_PDAC_01 4 534.8367919921875 2 534.835457 1067.65636 NaN NaN NaN NaN NaN NaN NaN 106.46 1 100.28 99.782 100.78 -6.1757 0 0 0 0.85737 1 71258 71258 0.6015 0 1 64916 9144 43246 44218 75750 75750 0.12523935591025293 TNLCDLITSL 10 Unmodified _TNLCDLITSL_ 0 0 0 ENSG00000155850|ENST00000286298|SLC26A2 ENSG00000155850|ENST00000286298|SLC26A2 ENSG00000155850|ENST00000286298|SLC26A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7848510742188 2 546.783907 1091.55326 0.73378 0.00040122 1.9169 0.0010481 2.6507 0.0014494 546.7842451218044 75.377 0.44818 69.201 68.981 69.429 -6.1757 73 24 4 0 0 0 0.54684 1 49359 49359 13.906 0.39817 1 77812000 64917 6410 43247 44219 75751 75751 0.011146422975571113 TNLDTVIDAW 10 Unmodified _TNLDTVIDAW_ 0 0 0 REV__nc|ENSG00000134897|Q86UB2-2|BIVM REV__nc|ENSG00000134897|Q86UB2-2|BIVM MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1932373046875 3 383.192511 1146.5557 0.93624 0.00035876 0.23845 9.1372E-05 1.1747 0.00045013 383.1924633893951 27.053 0.36297 24.017 23.836 24.199 -3.0365 54 18 4 0 0 0 0.63399 1 14904 14904 5.4027 5.4027 1 62727000 + 64918 20020 43248 44220 75752 75752 -0.01171185973134925 TNLHEIIDKL 10 Unmodified _TNLHEIIDKL_ 0 0 0 REV__ENSG00000213024|ENST00000352066|NUP62 REV__ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3400268554688 2 598.337695 1194.66084 0.5134 0.00030719 1.9212 0.0011495 2.4346 0.0014567 598.3386849213316 56.897 0.37636 56.829 56.578 56.955 -0.068741 63 18 5 0 0 0 0.24975 1 30890 30890 34.932 0 1 64889000 + 64919 24270 43249 44221 75753 75753 0.07129355223287348 TNLHEIIDKL 10 Unmodified _TNLHEIIDKL_ 0 0 0 REV__ENSG00000213024|ENST00000352066|NUP62 REV__ENSG00000213024|ENST00000352066|NUP62 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.337695 1194.66084 0.55801 0.00033388 3.653 0.0021857 4.211 0.0025196 598.3399559139098 57.182 0.25743 56.693 56.6 56.858 -0.48974 -0.067967 0.00086286 NaN 34.932 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1941000 + 64920 24270 43249 44221 0.07129355223287348 TNLVPNTQY 9 Unmodified _TNLVPNTQY_ 0 0 0 ENSG00000186628|ENST00000334574|FSD2 ENSG00000186628|ENST00000334574|FSD2 ENSG00000186628|ENST00000334574|FSD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.229736328125 2 525.266739 1048.51892 0.94509 0.00049643 1.3353 0.00070136 2.2803 0.0011978 525.2674997274115 45.982 0.30421 45.982 45.86 46.164 0 22 14 2 0 0 0 0.19205 1 25152 25152 14.838 3.7238 1 5857000 64921 9488 43250 44222 75754 75754 -0.00339437799038933 TNNDSNDSESD 11 Unmodified _TNNDSNDSESD_ 0 0 0 REV__nc|ENSG00000270647|Q92804-2|TAF15 REV__nc|ENSG00000270647|Q92804-2|TAF15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.2105102539062 2 599.210543 1196.40653 NaN NaN NaN NaN NaN NaN NaN 17.11 1 17.116 16.616 17.616 0.0050564 0 0 0 0.9435 1 8615 8615 0 0 1 + 64922 24627 43251 44223 75755 75755 -0.18381408124514564 TNPDLTGYL 9 Unmodified _TNPDLTGYL_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2483520507812 2 497.248015 992.481476 0.78498 0.00039033 0.34134 0.00016973 1.1263 0.00056006 497.24827189188517 47.722 0.4216 47.722 47.494 47.916 0 44 19 3 0 0 0 0.14 1 26167 26167 29.082 6.3453 1 4744700 + 64923 23893 43252 44224 75756 75756 -0.015065290646703033 TNPEDIYPS 9 Unmodified _TNPEDIYPS_ 0 0 0 ENSG00000026508|ENST00000428726|CD44;nc|ENSG00000026508|P16070-16|CD44;nc|ENSG00000026508|P16070-5|CD44;nc|ENSG00000026508|P16070-7|CD44;nc|ENSG00000026508|P16070-3|CD44;nc|ENSG00000026508|P16070-6|CD44;nc|ENSG00000026508|P16070-4|CD44;nc|ENSG00000026508|P16070-17|CD44;nc|ENSG00000026508|P16070-9|CD44;nc|ENSG00000026508|P16070-8|CD44;nc|ENSG00000026508|P16070-10|CD44;nc|ENSG00000026508|P16070-11|CD44;nc|ENSG00000026508|P16070-13|CD44;nc|ENSG00000026508|P16070-14|CD44;nc|ENSG00000026508|P16070-12|CD44;nc|ENSG00000026508|P16070-18|CD44;nc|ENSG00000026508|P16070-15|CD44;ENST00000531118.5_1_11:35198231-35211698:+|nuORF;ENST00000525209.5_1_11:35208413-35222108:+|nuORF ENSG00000026508|ENST00000428726|CD44 ENSG00000026508|ENST00000428726|CD44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2390747070312 2 518.235104 1034.45566 NaN NaN NaN NaN NaN NaN NaN 29.399 1 29.399 28.899 29.899 0 0 0 0 0.83812 1 15225 15225 2.9952 0.10602 1 64924 561 43253 44225 75757 75757 -0.06019423306952376 TNPELGSNV 9 Unmodified _TNPELGSNV_ 0 0 0 ENSG00000075891|ENST00000355243|PAX2;nc|ENSG00000075891|Q02962|PAX2;nc|ENSG00000075891|Q02962-4|PAX2;nc|ENSG00000075891|Q02962-2|PAX2 ENSG00000075891|ENST00000355243|PAX2 ENSG00000075891|ENST00000355243|PAX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7314758300781 2 465.729989 929.445425 NaN NaN NaN NaN NaN NaN NaN 53.695 1 53.631 53.131 54.131 -0.063423 0 0 0 0.34649 1 29136 29136 22.736 1.8651 1 64925 1173 43254 44226 75758 75758 -0.022119862415024727 TNPEVKYNYT 10 Unmodified _TNPEVKYNYT_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7962036132812 2 614.79586 1227.57717 0.40532 0.00024919 -0.41653 -0.00025608 -0.01121 -6.8917E-06 614.7957702172966 47.135 0.29111 47.135 46.999 47.29 0 33 13 3 0 0 0 0.64628 1 25875 25875 8.7454 8.7454 1 10167000 64926 3047 43255 44227 75759 75759 -0.027518009444293057 TNPLNTPPHI 10 Unmodified _TNPLNTPPHI_ 0 0 0 ENST00000503630.1_1_5:93905991-93906057:+|nuORF ENST00000503630.1_1_5:93905991-93906057:+|nuORF ENST00000503630.1_1_5:93905991-93906057:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5337524414062 3 368.532979 1102.57711 1.479 0.00054505 -0.2632 -9.7E-05 1.2158 0.00044805 368.5327704744367 30.327 0.30076 26.83 26.655 26.956 -3.497 21 14 2 0 0 0 0.46514 1 17079 17079 11.518 0 1 17507000 64927 14473 43256 44228 75760 75760 0.029922438462335776 TNQIYTNEI 9 Unmodified _TNQIYTNEI_ 0 0 0 ENST00000374791.7_1_11:132205045-132205564:+|nuORF ENST00000374791.7_1_11:132205045-132205564:+|nuORF ENST00000374791.7_1_11:132205045-132205564:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2698974609375 2 548.269478 1094.5244 0.46443 0.00025463 0.017108 9.3795E-06 0.48154 0.00026401 548.2695630306887 52.102 0.6189 46.367 46.107 46.726 -5.7345 125 39 4 0 0 0 0.069655 1 32983 32983 52.268 4.5197 1 899580000 64928 12456 43257 44229 75761 75761 -0.019077590072356543 TNQYILDV 8 Unmodified _TNQYILDV_ 0 0 0 REV__nc|ENSG00000149177|Q12913-3|PTPRJ REV__nc|ENSG00000149177|Q12913-3|PTPRJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4900512695312 1 965.493838 964.486562 -0.028753 -2.7761E-05 -2.4201 -0.0023366 -2.4488 -0.0023643 965.4930321236077 48.259 0.34164 48.259 48.092 48.433 0 32 16 3 0 0 0 0.52622 1 26518 26518 32.305 3.2239 1 10053000 + 64929 29698 43258 44230 75762 75762 0.0028977479796594707 TNRRYFIEKYE 11 Unmodified _TNRRYFIEKYE_ 0 0 0 REV__ENSG00000115339|ENST00000392701|GALNT3 REV__ENSG00000115339|ENST00000392701|GALNT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.9286499023438 3 506.928169 1517.76268 NaN NaN NaN NaN NaN NaN NaN 26.154 1 26.181 25.681 26.681 0.026951 0 0 0 0.94293 1 13560 13560 0.40827 0 1 + 64930 18972 43259 44231 75763 75763 0.02450601575037581 TNSLHTAHHI 10 Unmodified _TNSLHTAHHI_ 0 0 0 REV__nc|ENSG00000198554|O75717-2|WDHD1 REV__nc|ENSG00000198554|O75717-2|WDHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8596801757812 3 377.528228 1129.56285 1.4365 0.00054231 -1.2256 -0.00046269 0.2109 7.9622E-05 377.528198189394 36.15 0.58369 31.957 31.584 32.168 -4.1928 109 35 4 0 0 0 0.63399 1 20923 20923 5.4027 0 1 71263000 + 64931 24024 43260 44232 75764 75764 0.0032559141793626623 TNSPTVIVM 9 Oxidation (M) _TNSPTVIVM(Oxidation (M))_ TNSPTVIVM(1) TNSPTVIVM(63) 0 0 1 nc|ENSG00000170525|Q16875-4|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4988403320312 1 977.497209 976.489932 0.45571 0.00044545 0.98803 0.0009658 1.4437 0.0014112 977.4979440854155 38.653 0.23079 38.653 38.494 38.725 0 18 10 2 0 0 0 0.020973 1 20599 20599 62.573 22.124 1 905090 64932 16378 43261 44233 75765 75765 1816 0.0007470158031992469 TNSPTVIVM 9 Oxidation (M) _TNSPTVIVM(Oxidation (M))_ TNSPTVIVM(1) TNSPTVIVM(44) 0 0 1 nc|ENSG00000170525|Q16875-4|PFKFB3;nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 nc|ENSG00000170525|Q16875-4|PFKFB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2516784667969 2 489.252243 976.489932 0.54723 0.00026773 -0.93998 -0.00045989 -0.39274 -0.00019215 489.2516661673044 38.64 0.37663 38.64 38.458 38.834 0 44 17 3 0 0 0 0.05447 1 20611 20611 43.858 9.7559 1 7317400 64933 16378 43261 44233 75766 75766 1816 0.0007470158031992469 TNVAAPPP 8 Unmodified _TNVAAPPP_ 0 0 0 REV__ENST00000302913.8_1_7:100488489-100488690:-|nuORF REV__ENST00000302913.8_1_7:100488489-100488690:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.7078857421875 2 383.708328 765.402104 NaN NaN NaN NaN NaN NaN NaN 22.843 1 22.843 22.343 23.343 0 0 0 0 0.95607 1 11628 11628 9.3474 0 1 + 64934 25346 43262 44234 75767 75767 0.010018687718456931 TNWTKKDPDGF 11 Unmodified _TNWTKKDPDGF_ 0 0 0 ENSG00000188676|ENST00000502986|IDO2 ENSG00000188676|ENST00000502986|IDO2 ENSG00000188676|ENST00000502986|IDO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.2127380371094 3 436.878815 1307.61462 -0.27448 -0.00011992 1.3184 0.00057599 1.0439 0.00045608 437.21345161325775 32.938 0.71234 32.779 32.386 33.098 -0.15919 47 29 4 0 0 0 0.73237 1 17286 17286 1.2148 0.4383 1 1487700 64935 9684 43263 44235 75768 75768 -0.026887096788186682 TNYDYRDGEI 10 Unmodified _TNYDYRDGEI_ 0 0 0 REV__ENSG00000138615|ENST00000261883|CILP REV__ENSG00000138615|ENST00000261883|CILP MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.8507690429688 3 415.850925 1244.53095 0.69589 0.00028939 -0.20252 -8.4218E-05 0.49337 0.00020517 415.8506365156437 27.964 0.49202 24.816 24.605 25.097 -3.1482 39 26 2 0 0 0 0.69848 1 15490 15490 3.0723 0.44103 1 11774000 + 64936 20345 43264 44236 75769 75769 -0.08153865846520603 TNYDYRDGEI 10 Unmodified _TNYDYRDGEI_ 0 0 0 REV__ENSG00000138615|ENST00000261883|CILP REV__ENSG00000138615|ENST00000261883|CILP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 415.850925 1244.53095 0.079523 3.307E-05 -0.84831 -0.00035277 -0.76879 -0.0003197 415.8503619682468 24.917 0.090654 24.941 24.883 24.974 0.024429 0.062498 -0.00056252 NaN 3.0723 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 4785700 + 64937 20345 43264 44236 -0.08153865846520603 TPAAALDRF 9 Unmodified _TPAAALDRF_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2586669921875 2 481.258717 960.50288 -0.12826 -6.1725E-05 0.28942 0.00013928 0.16116 7.7559E-05 481.2588345418041 44.6 0.21901 44.6 44.472 44.691 0 16 11 2 0 0 0 0.0087923 1 24252 24252 103.42 69.317 1 10317000 64938 2781 43265 44237 75770 75770 0.021049007546935172 TPAAALDRF 9 Unmodified _TPAAALDRF_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.26025390625 2 481.258717 960.50288 0.90123 0.00043372 0.53956 0.00025967 1.4408 0.00069339 481.25880260807617 49.9 0.38958 44.361 44.141 44.531 -5.5391 43 24 2 0 0 0 0.012228 2 31162 31162;31301 74.2 47.932 1 34144000 64939 2781 43265 44237 75771;75772 75771 0.021049007546935172 TPAAVEAEEE 10 Unmodified _TPAAVEAEEE_ 0 0 0 REV__ENSG00000196642|ENST00000311502|RABL6 REV__ENSG00000196642|ENST00000311502|RABL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2376708984375 2 523.237844 1044.46113 0.45336 0.00023721 0.026076 1.3644E-05 0.47943 0.00025086 523.2377625457237 63.984 0.22012 63.499 63.413 63.634 -0.48512 16 11 2 0 0 0 0.44373 1 34949 34949 19.257 5.7491 1 1577200 + 64940 23854 43266 44238 75773 75773 -0.0593174451514642 TPADARIQIL 10 Unmodified _TPADARIQIL_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.3193969726562 2 549.319306 1096.62406 0.63619 0.00034947 -1.1786 -0.00064745 -0.54245 -0.00029798 549.3186000514729 53.679 0.27149 53.679 53.525 53.797 0 20 12 2 0 0 0 0.14294 1 29749 29749 40.725 19.188 1 4169300 64941 8942 43267 44239 75774 75774 0.0796110339738334 TPADARIQIL 10 Unmodified _TPADARIQIL_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3200073242188 2 549.319306 1096.62406 0.2474 0.0001359 0.0087473 4.8051E-06 0.25615 0.00014071 549.3192359029845 54.107 0.31762 53.64 53.466 53.784 -0.46664 34 15 3 0 0 0 0.036372 1 29284 29284 64.927 37.298 1 8775800 64942 8942 43267 44239 75775 75775 0.0796110339738334 TPADARIQIL 10 Unmodified _TPADARIQIL_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1 ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3201904296875 2 549.319306 1096.62406 0.88972 0.00048874 0.043843 2.4084E-05 0.93357 0.00051283 549.3193189960743 59.88 0.34835 53.765 53.635 53.983 -6.1147 33 19 2 0 0 0 0.04428 2 38458 38458;38603 61.09 33.461 1 36009000 64943 8942 43267 44239 75776;75777 75776 0.0796110339738334 TPADGRIIY 9 Unmodified _TPADGRIIY_ 0 0 0 ENST00000484437.1_1_3:44779222-44795794:-|nuORF;ENSG00000163807|ENST00000296121|KIAA1143 ENST00000484437.1_1_3:44779222-44795794:-|nuORF ENST00000484437.1_1_3:44779222-44795794:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2727661132812 2 503.271824 1004.5291 NaN NaN NaN NaN NaN NaN NaN 38.002 1 38.002 37.502 38.502 0 0 0 0 0.39118 1 20266 20266 20.415 5.5763 1 64944 7071 43268 44240 75778 75778 0.02701169926183411 TPADQPLPF 9 Unmodified _TPADQPLPF_ 0 0 0 REV__ENSG00000266074|ENST00000675386|BAHCC1 REV__ENSG00000266074|ENST00000675386|BAHCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2544860839844 2 493.2531 984.491647 0.25899 0.00012775 -0.82634 -0.0004076 -0.56735 -0.00027985 493.2524044838079 65.697 0.22792 65.213 65.061 65.289 -0.48428 16 9 2 0 0 0 0.08691 1 35852 35852 36.127 9.2434 1 1114200 + 64945 24605 43269 44241 75779 75779 -0.001219213394392682 TPADVFIVF 9 Unmodified _TPADVFIVF_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7741088867188 2 504.773668 1007.53278 -0.097175 -4.9052E-05 1.4597 0.00073682 1.3625 0.00068777 504.77428644453306 99.02 0.22035 98.827 98.721 98.942 -0.19321 19 7 3 0 0 0 0.016184 1 54068 54068 67.344 37.119 1 7533700 64946 3250 43270 44242 75780 75780 0.029318397000452023 TPADVFIVF 9 Unmodified _TPADVFIVF_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 504.773668 1007.53278 4.2474 0.002144 -0.37436 -0.00018897 3.8731 0.001955 504.7733792879242 98.846 0.174 98.818 98.746 98.92 -0.028282 -0.0044828 -0.0016869 NaN 67.344 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2825500 64947 3250 43270 44242 0.029318397000452023 TPAEIREEF 9 Unmodified _TPAEIREEF_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;nc|ENSG00000007923|Q9NVH1-3|DNAJC11;ENST00000460594.5_1_1:6714320-6761860:-|nuORF;ENST00000485073.5_1_1:6713895-6761860:-|nuORF nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.26953125 2 546.272021 1090.52949 0.30082 0.00016433 -0.85042 -0.00046456 -0.5496 -0.00030023 546.2712806887233 45.336 0.34393 40.381 40.254 40.598 -4.9549 37 23 2 0 0 0 0.05483 1 27938 27938 43.772 18.781 1 22138000 64948 370 43271 44243 75781 75781 -0.012154551446201367 TPAEPPTPE 9 Unmodified _TPAEPPTPE_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4464111328125 1 938.446553 937.439277 0.60916 0.00057166 -0.89093 -0.00083609 -0.28177 -0.00026443 938.445702543457 36.545 0.30175 36.545 36.388 36.69 0 32 14 3 0 0 0 0.16226 1 19340 19340 26.884 3.7352 1 5616100 64949 9779 43272 44244 75782 75782 -0.031945044730491645 TPAEPTPGY 9 Unmodified _TPAEPTPGY_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7224426269531 2 466.721633 931.428712 -0.23521 -0.00010978 0.3101 0.00014473 0.074894 3.4955E-05 466.721671475446 30.036 0.27176 30.036 29.888 30.16 0 26 12 3 0 0 0 0.0086629 1 15562 15562 101.72 54.801 1 3177100 64950 16096;16097 43273 44245 75783 75783 -0.03974487127482007 TPAEPTPGY 9 Unmodified _TPAEPTPGY_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4334716796875 1 932.435989 931.428712 -0.33417 -0.00031159 -0.96402 -0.00089888 -1.2982 -0.0012105 932.4347101141078 30.054 0.21067 30.054 29.909 30.12 0 20 9 3 0 0 0 1.0251E-06 1 15572 15572 162.95 114.61 1 3458500 64951 16096;16097 43273 44245 75784 75784 -0.03974487127482007 TPAEPTPGY 9 Unmodified _TPAEPTPGY_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.2529296875 2 466.721633 931.428712 0.67124 0.00031328 1.1498 0.00053666 1.8211 0.00084994 466.72210551417646 35.266 0.26308 31.171 31.023 31.286 -4.0951 26 15 2 0 0 0 0.081537 1 20396 20396 34.102 21.571 1 9567900 64952 16096;16097 43273 44245 75785 75785 -0.03974487127482007 TPAEPVQYY 9 Unmodified _TPAEPVQYY_ 0 0 0 ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF;nc|ENSG00000066136|Q13952-4|NFYC;nc|ENSG00000066136|Q13952-6|NFYC;nc|ENSG00000066136|Q13952-7|NFYC;ENSG00000066136|ENST00000447388|NFYC;nc|ENSG00000066136|Q13952-5|NFYC;nc|ENSG00000066136|Q13952-3|NFYC;nc|ENSG00000066136|Q13952|NFYC ENST00000424419.6_1_1:41157373-41232429:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2557983398438 2 534.25584 1066.49713 1.0109 0.00054007 0.40467 0.0002162 1.4155 0.00075627 534.2561529288889 49.685 0.21749 44.146 44.034 44.251 -5.5391 17 13 2 0 0 0 0.06294 1 31126 31126 41.84 22.401 1 19957000 64953 13148 43274 44246 75786 75786 -0.03346242547604561 TPAEQNLS 8 Unmodified _TPAEQNLS_ 0 0 0 REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF REV__ENST00000376681.7_1_17:46840236-46881289:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2122497558594 2 430.211432 858.408311 NaN NaN NaN NaN NaN NaN NaN 105.33 1 99.153 98.653 99.653 -6.1757 0 0 0 0.97444 1 70579 70579 2.5775 0 1 + 64954 22505 43275 44247 75787 75787 -0.026556577872838716 TPAERGLVY 9 Unmodified _TPAERGLVY_ 0 0 0 ENST00000357085.4_2_6:25963311-25963422:+|nuORF ENST00000357085.4_2_6:25963311-25963422:+|nuORF ENST00000357085.4_2_6:25963311-25963422:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2726440429688 2 503.271824 1004.5291 -0.18785 -9.4541E-05 0.32882 0.00016549 0.14097 7.0947E-05 503.2720647483148 34.685 0.27017 34.685 34.54 34.81 0 39 13 4 0 0 0 0.033587 1 18243 18243 53.404 27.136 1 17396000 64955 12108 43276 44248 75788 75788 0.027011699261947797 TPAERGLVY 9 Unmodified _TPAERGLVY_ 0 0 0 ENST00000357085.4_2_6:25963311-25963422:+|nuORF ENST00000357085.4_2_6:25963311-25963422:+|nuORF ENST00000357085.4_2_6:25963311-25963422:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2716674804688 2 503.271824 1004.5291 0.58955 0.0002967 -0.45607 -0.00022953 0.13347 6.7173E-05 503.27228413704853 38.858 0.38986 34.407 34.175 34.565 -4.4509 52 24 3 0 0 0 0.069655 1 22946 22946 40.239 16.219 1 28726000 64956 12108 43276 44248 75789 75789 0.027011699261947797 TPAERQLVF 9 Unmodified _TPAERQLVF_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7929077148438 2 530.792924 1059.57129 0.37543 0.00019927 -0.086876 -4.6113E-05 0.28855 0.00015316 530.7929435156977 46.807 0.24376 46.807 46.678 46.922 0 21 11 3 0 0 0 0.082934 1 25630 25630 37.075 12.084 1 3396200 64957 4627 43277 44249 75790 75790 0.04389145334562272 TPAERQLVF 9 Unmodified _TPAERQLVF_ 0 0 0 nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000134644|Q14671-4|PUM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 530.792924 1059.57129 0.59407 0.00031533 -0.53777 -0.00028544 0.056299 2.9883E-05 530.7927638832125 47.058 0.16996 46.721 46.624 46.794 -0.33664 -0.043216 -0.00025843 NaN 37.075 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2483100 64958 4627 43277 44249 0.04389145334562272 TPAEVFQAL 9 Unmodified _TPAEVFQAL_ 0 0 0 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2603759765625 2 488.260925 974.507297 0.27259 0.0001331 -0.31119 -0.00015194 -0.0386 -1.8847E-05 488.2605495807924 77.151 0.13344 70.975 70.919 71.052 -6.1757 10 7 2 0 0 0 0.019303 1 50493 50493 64.236 37.353 1 9174400 64959 6772 43278 44250 75791 75791 0.01902365177613774 TPAEVFQAL 9 Unmodified _TPAEVFQAL_ 0 0 0 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 ENSG00000160957|ENST00000617875|RECQL4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.260925 974.507297 0.67474 0.00032945 -0.22671 -0.00011069 0.44803 0.00021876 488.2605663518009 71.697 0.22103 71.221 71.098 71.319 -0.47609 0.12297 5.1578E-05 NaN 64.236 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 327290 64960 6772 43278 44250 0.01902365177613774 TPAEVRQVL 9 Unmodified _TPAEVRQVL_ 0 0 0 nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 nc|ENSG00000103051|Q9H9E3-3|COG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7935791015625 2 506.792924 1011.57129 0.37228 0.00018867 -0.3366 -0.00017059 0.035672 1.8078E-05 506.7926615347182 37.456 0.23589 37.456 37.35 37.586 0 29 12 3 0 0 0 0.0081887 1 19916 19916 93.166 45.417 1 8139200 64961 2097 43279 44251 75792 75792 0.06597145334569632 TPAEVSHRF 9 Unmodified _TPAEVSHRF_ 0 0 0 nc|ENSG00000116580|Q3T8J9-3|GON4L;ENSG00000116580|ENST00000368331|GON4L;ENST00000473267.1_1_1:155720377-155721671:-|nuORF nc|ENSG00000116580|Q3T8J9-3|GON4L nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2683715820312 2 522.267073 1042.51959 0.32587 0.00017019 0.76441 0.00039922 1.0903 0.00056941 522.2672991254807 24.143 0.33785 21.316 21.091 21.428 -2.8273 31 18 2 0 0 0 0.013609 1 13038 13038 70.332 26.474 1 3719400 64962 3229 43280 44252 75793 75793 3.401640651645721E-05 TPAFHFNIL 9 Unmodified _TPAFHFNIL_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;ENSG00000186526|ENST00000612078|CYP4F8;ENSG00000186204|ENST00000550308|CYP4F12;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;ENST00000518629.7_2_19:15791179-15807110:+|nuORF;ENST00000591841.1_1_19:16034883-16038300:-|nuORF;ENST00000548237.5_1_19:15784485-15791914:+|nuORF;ENST00000517734.5_1_19:15784518-15794591:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2843017578125 2 530.284734 1058.55492 0.3851 0.00020421 -0.16674 -8.8419E-05 0.21836 0.0001158 530.2842080884835 78.528 0.21915 78.58 78.532 78.752 0.052452 17 8 3 0 0 0 0.28047 1 43428 43428 18.135 7.0205 1 1827900 64963 8158;16462;13528 43281 44253 75794 75794 0.02798064168473502 TPAGAAVSAM 10 Unmodified _TPAGAAVSAM_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.2191162109375 2 438.218203 874.421853 1.0011 0.00043869 -0.28483 -0.00012482 0.71624 0.00031387 438.21818278119747 41.124 0.32814 36.516 36.327 36.655 -4.6079 35 20 2 0 0 0 0.020813 1 24595 24595 74.929 29.229 1 10686000 64964 1464 43282 44254 75795 75795 -0.020381232796921722 TPAGAAVSAM 10 Oxidation (M) _TPAGAAVSAM(Oxidation (M))_ TPAGAAVSAM(1) TPAGAAVSAM(44) 0 0 1 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000506157.1_1_4:2889441-2900342:+|nuORF nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MSMS AL20221201_MKP_PDAC_01 4 446.2154235839844 2 446.21566 890.416767 NaN NaN NaN NaN NaN NaN NaN 23.865 1 21.037 20.537 21.537 -2.8273 0 0 0 0.19054 1 12944 12944 43.858 14.777 1 64965 1464 43282 44255 75796 75796 251 -0.03282427142301003 TPAGDIMEL 9 Oxidation (M) _TPAGDIM(Oxidation (M))EL_ TPAGDIM(1)EL TPAGDIM(48)EL 0 0 1 ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1 ENST00000576921.1_1_16:3072866-3073436:-|nuORF ENST00000576921.1_1_16:3072866-3073436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7293395996094 2 481.7286 961.442648 0.83004 0.00039985 -0.45399 -0.0002187 0.37605 0.00018115 481.72821696477786 46.063 0.35188 46.063 45.9 46.252 0 25 16 2 0 0 0 0.042911 1 25130 25130 48.346 25.197 1 3721800 64966 2104 43283 44256 75797 75797 361 -0.03961577690665763 TPAGNFVTL 9 Unmodified _TPAGNFVTL_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2477111816406 2 460.247818 918.481082 0.48107 0.00022141 -0.37893 -0.0001744 0.10214 4.701E-05 460.24736715494765 62.133 0.2613 62.133 61.996 62.257 0 18 12 2 0 0 0 0.047196 1 34659 34659 46.021 21.347 1 1889800 64967 2369 43284 44257 75798 75798 0.01858096006139931 TPAGNFVTL 9 Unmodified _TPAGNFVTL_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2477111816406 2 460.247818 918.481082 0.48018 0.000221 0.46745 0.00021514 0.94764 0.00043615 460.24764695617563 62.626 0.28527 62.138 61.976 62.261 -0.48764 31 13 3 0 0 0 0.015445 1 34108 34108 68.081 23.674 1 7085700 64968 2369 43284 44257 75799 75799 0.01858096006139931 TPAGPTVLIL 10 Unmodified _TPAGPTVLIL_ 0 0 0 REV__ENSG00000167378|ENST00000422989|IRGQ REV__ENSG00000167378|ENST00000422989|IRGQ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.3023376464844 2 491.302593 980.590633 NaN NaN NaN NaN NaN NaN NaN 84.645 1 84.146 83.646 84.646 -0.49961 0 0 0 0.83398 1 46319 46319 10.824 0 1 + 64969 22207 43285 44258 75800 75800 0.09956101625471092 TPAGVVNKY 9 Unmodified _TPAGVVNKY_ 0 0 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7610778808594 2 474.761092 947.507631 -0.27483 -0.00013048 -0.2822 -0.00013398 -0.55703 -0.00026446 474.7608973431643 25.395 0.28903 25.395 25.239 25.528 0 42 13 4 0 0 0 2.2513E-10 2 12979 12979;13076 172.91 116.37 1 36644000 64970 8266 43286 44259 75801;75802 75801 0.031777848974684275 TPAGVVNKY 9 Unmodified _TPAGVVNKY_ 0 0 0 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 ENSG00000172893|ENST00000355527|DHCR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7613830566406 2 474.761092 947.507631 0.76694 0.00036411 -0.48818 -0.00023177 0.27876 0.00013234 474.76107749685775 28.677 0.48224 25.529 25.262 25.744 -3.1482 59 23 4 0 0 0 2.1289E-06 2 16098 15972;16098 158.2 109.86 1 122420000 64971 8266 43286 44259 75803;75804 75804 0.031777848974684275 TPAGVYTVF 9 Unmodified _TPAGVYTVF_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7491455078125 2 477.750193 953.485833 0.53665 0.00025638 -2.1359 -0.0010204 -1.5993 -0.00076405 477.7497146848928 67.259 0.46136 66.777 66.634 67.096 -0.48219 33 20 2 0 0 0 0.06187 1 36719 36719 42.095 18.946 1 1899700 64972 9016 43287 44260 75805 75805 0.007229801489074816 TPAGVYTVF 9 Unmodified _TPAGVYTVF_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.4932861328125 1 954.49311 953.485833 0.32244 0.00030777 -0.34601 -0.00033027 -0.023573 -2.25E-05 954.4926661744101 67.225 0.3924 66.742 66.547 66.939 -0.48219 39 17 3 0 0 0 0.0088975 1 36774 36774 104.8 44.41 1 5998500 64973 9016 43287 44260 75806 75806 0.007229801489074816 TPAGVYTVF 9 Unmodified _TPAGVYTVF_ 0 0 0 ENSG00000182095|ENST00000430969|TNRC18;nc|ENSG00000182095|O15417-2|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 ENSG00000182095|ENST00000430969|TNRC18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 954.4939575195312 1 954.49311 953.485833 0.72758 0.00069447 0.28105 0.00026826 1.0086 0.00096273 954.4934441763463 72.596 0.17107 66.421 66.351 66.522 -6.1757 11 8 2 0 0 0 0.0088975 1 47505 47505 104.8 53.944 1 9178100 64974 9016 43287 44260 75807 75807 0.007229801489074816 TPAHHYNDFRF 11 Unmodified _TPAHHYNDFRF_ 0 0 0 nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;ENST00000486048.2_1_1:151204736-151206704:+|nuORF nc|ENSG00000143398|Q99755-2|PIP5K1A nc|ENSG00000143398|Q99755-2|PIP5K1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.88671875 3 468.886304 1403.63708 0.29384 0.00013778 1.3972 0.00065514 1.6911 0.00079292 468.88693817761384 45.482 0.24064 45.482 45.345 45.586 0 30 13 3 0 0 0 0.67477 1 24772 24772 6.6235 1.9075 1 25052000 64975 5507 43288 44261 75808 75808 -0.048590654905638075 TPAHVRKQL 9 Unmodified _TPAHVRKQL_ 0 0 0 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 ENSG00000152464|ENST00000378197|RPP38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.88037109375 3 350.545331 1048.61416 0.87256 0.00030587 1.0134 0.00035525 1.886 0.00066112 350.8798193616501 14.63 0.054695 12.128 12.092 12.147 -2.5029 17 11 2 0 0 0 0.32871 1 7438 7438 10.8 5.3968 1 1817400 64976 6188 43289 44262 75809 75809 0.09179960182655122 TPAHVYYRWKL 11 Unmodified _TPAHVYYRWKL_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1978454589844 4 359.197665 1432.76155 0.84128 0.00030219 0.55132 0.00019803 1.3926 0.00050022 359.19769083309535 11.919 0.046453 9.4366 9.4224 9.4688 -2.482 12 5 3 0 0 0 0.74046 1 6009 6009 0.45452 0 1 1241600 64977 7056;16328 43290 44263 75810 75810 0.062484319968007185 TPAIIITTM 9 Oxidation (M) _TPAIIITTM(Oxidation (M))_ TPAIIITTM(1) TPAIIITTM(85) 0 0 1 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7734985351562 2 488.772811 975.531069 0.44763 0.00021879 -0.53345 -0.00026074 -0.085818 -4.1946E-05 488.7725493282769 55.161 0.43283 54.683 54.429 54.861 -0.47798 43 20 3 0 0 0 0.0090851 1 29896 29896 85.357 37.011 1 5447500 64978 4913 43291 44264 75811 75811 894 0.04232462619779653 TPAIIITTM 9 Unmodified _TPAIIITTM_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MSMS AL20221201_MKP_PDAC_01 4 480.7757873535156 2 480.775354 959.536154 NaN NaN NaN NaN NaN NaN NaN 80.314 1 74.138 73.638 74.638 -6.1757 0 0 0 0.080768 1 52689 52689 48.346 26.599 1 64979 4913 43291 44265 75812 75812 0.05476766482388484 TPAIPART 8 Unmodified _TPAIPART_ 0 0 0 ENST00000480730.5_1_6:33272764-33272896:-|nuORF ENST00000480730.5_1_6:33272764-33272896:-|nuORF ENST00000480730.5_1_6:33272764-33272896:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7438354492188 2 413.742702 825.470852 1.3349 0.0005523 1.0123 0.00041885 2.3472 0.00097115 413.74283611466336 20.078 0.26591 17.422 17.239 17.505 -2.6564 27 15 2 0 0 0 0.50673 1 10665 10665 34.102 0 1 3334100 64980 14062 43292 44266 75813 75813 0.05113533071573784 TPAKARTTTL 10 Unmodified _TPAKARTTTL_ 0 0 0 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 ENSG00000081923|ENST00000648908|ATP8B1 MSMS AL20221201_MKP_PDAC_01 4 353.8767395019531 3 353.876746 1058.60841 NaN NaN NaN NaN NaN NaN NaN 16.792 1 14.235 13.735 14.735 -2.557 0 0 0 0.76982 1 8725 8725 16.275 7.2983 1 64981 1335 43293 44267 75814 75814 0.08144816880303551 TPAKVVYVF 9 Unmodified _TPAKVVYVF_ 0 0 0 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 ENSG00000116128|ENST00000234739|BCL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2967529296875 2 512.29731 1022.58007 -0.1324 -6.783E-05 -0.13719 -7.028E-05 -0.26959 -0.00013811 512.2972355234828 55.919 0.42998 55.85 55.685 56.115 -0.068737 40 22 3 0 0 0 0.094149 1 30450 30450 34.402 5.9149 1 13033000 64982 3195 43294 44268 75815 75815 0.06968118971042259 TPALIALRY 9 Unmodified _TPALIALRY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.3086853027344 2 509.30821 1016.60187 0.11744 5.9812E-05 0.60186 0.00030653 0.7193 0.00036634 509.3085981326267 63.67 0.27958 63.184 63.016 63.295 -0.48617 35 12 4 0 0 0 0.0090948 2 34687 34687;34787 85.272 40.865 1 8781300 64983 9767;6130;10113 43295 44269 75816;75817 75816 0.09422923719591836 TPALIALRY 9 Unmodified _TPALIALRY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3086853027344 2 509.30821 1016.60187 0.63183 0.0003218 -0.31452 -0.00016019 0.31732 0.00016161 509.30799616900595 63.228 0.47191 63.207 62.988 63.46 -0.021614 79 23 5 0 0 0 0.0041763 2 34510 34510;34621 120.45 80.493 1 187480000 64984 9767;6130;10113 43295 44269 75818;75819 75818 0.09422923719591836 TPALIALRY 9 Unmodified _TPALIALRY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.3086547851562 2 509.30821 1016.60187 0.57415 0.00029242 -0.56299 -0.00028673 0.011161 5.6842E-06 509.30828387710756 68.309 1.1806 62.133 61.799 62.98 -6.1757 137 67 4 0 0 0 0.020973 5 44568 44434;44568;44707;44837;44966 62.573 28.47 1 218360000 64985 9767;6130;10113 43295 44269 75820;75821;75822;75823;75824 75821 0.09422923719591836 TPALIALRY 9 Unmodified _TPALIALRY_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.3089904785156 2 509.30821 1016.60187 0.66017 0.00033623 0.21953 0.00011181 0.8797 0.00044804 509.30850864062927 70.093 0.85221 63.918 63.41 64.262 -6.1757 110 47 3 0 0 0 0.011968 4 45968 45593;45711;45839;45968 74.929 30.522 1 68768000 64986 9767;6130;10113 43295 44269 75825;75826;75827;75828 75828 0.09422923719591836 TPALLTPVL 9 Unmodified _TPALLTPVL_ 0 0 0 ENSG00000140450|ENST00000268042|ARRDC4 ENSG00000140450|ENST00000268042|ARRDC4 ENSG00000140450|ENST00000268042|ARRDC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.79150390625 2 462.791861 923.569169 0.35247 0.00016312 -2.7009 -0.00125 -2.3485 -0.0010869 462.7917577491776 85.663 0.40845 85.161 85.086 85.495 -0.5015 26 18 2 0 0 0 0.23158 1 46885 46885 20.454 8.8133 1 824300 64987 5234 43296 44270 75829 75829 0.1043271659674474 TPALSIKPSA 10 Unmodified _TPALSIKPSA_ 0 0 0 REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L REV__nc|ENSG00000168488|Q8WWM7-6|ATXN2L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2446899414062 2 492.78985 983.565146 0.068178 3.3597E-05 0.97923 0.00048256 1.0474 0.00051615 492.7904209316211 65.179 0.26862 65.179 65.052 65.32 0 22 10 3 0 0 0 0.23257 1 36342 36342 11.495 0 1 1240900 + 64988 22316 43297 44271 75830 75830 0.07270627103048355 TPALVNAAVTY 11 Unmodified _TPALVNAAVTY_ 0 0 0 ENST00000533172.5_1_11:118272380-118279724:+|nuORF;ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG ENST00000533172.5_1_11:118272380-118279724:+|nuORF ENST00000533172.5_1_11:118272380-118279724:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2520751953125 2 560.305864 1118.59717 0.42557 0.00023845 -1.3342 -0.00074753 -0.90858 -0.00050909 560.3046292954677 59.017 0.41199 59.017 58.829 59.241 0 44 17 4 0 0 0 0.18099 1 32845 32845 33.445 24.062 1 9267000 64989 7597 43298 44272 75831 75831 0.04261994786179457 TPALVNAAVTY 11 Unmodified _TPALVNAAVTY_ 0 0 0 ENST00000533172.5_1_11:118272380-118279724:+|nuORF;ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG ENST00000533172.5_1_11:118272380-118279724:+|nuORF ENST00000533172.5_1_11:118272380-118279724:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3050537109375 2 560.305864 1118.59717 0.50617 0.00028361 -0.15382 -8.6185E-05 0.35235 0.00019742 560.3057041115651 59.676 0.67883 59.185 58.792 59.471 -0.49079 83 32 5 0 0 0 0.020907 1 32403 32403 61.602 36.203 1 79600000 64990 7597 43298 44272 75832 75832 0.04261994786179457 TPALVNAAVTY 11 Unmodified _TPALVNAAVTY_ 0 0 0 ENST00000533172.5_1_11:118272380-118279724:+|nuORF;ENST00000534385.1_1_11:118272380-118277824:+|nuORF;ENSG00000249222|ENST00000505920|ATP5MGL;ENSG00000167283|ENST00000300688|ATP5MG ENST00000533172.5_1_11:118272380-118279724:+|nuORF ENST00000533172.5_1_11:118272380-118279724:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3065795898438 2 560.305864 1118.59717 0.88663 0.00049679 1.1705 0.00065586 2.0572 0.0011526 560.3059360150389 67.023 0.79461 60.847 60.558 61.352 -6.1757 150 44 5 0 0 0 0.0094206 2 43595 43595;43738 74.2 48.8 1 351260000 64991 7597 43298 44272 75833;75834 75833 0.04261994786179457 TPAPASPPVL 10 Unmodified _TPAPASPPVL_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.2710266113281 2 475.271293 948.528032 0.82066 0.00039004 -1.9796 -0.00094087 -1.159 -0.00055083 475.27048562775457 74.15 0.26955 73.675 73.57 73.84 -0.47588 17 10 2 0 0 0 0.62068 1 40581 40581 10.074 3.3508 1 484580 64992 10627 43299 44273 75835 75835 0.05170955557275647 TPAPGFSSM 9 Oxidation (M) _TPAPGFSSM(Oxidation (M))_ TPAPGFSSM(1) TPAPGFSSM(55) 0 0 1 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7018737792969 2 455.702386 909.390218 -0.3603 -0.00016419 0.40222 0.00018329 0.041921 1.9103E-05 455.7025139681811 30.232 0.30476 30.232 30.078 30.383 0 24 14 2 0 0 0 0.031062 1 15668 15668 54.774 35.335 1 3847800 64993 6383 43300 44274 75836 75836 1121 -0.0681011603363686 TPAPGFSSM 9 Oxidation (M) _TPAPGFSSM(Oxidation (M))_ TPAPGFSSM(1) TPAPGFSSM(93) 0 0 1 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7021179199219 2 455.702386 909.390218 0.98107 0.00044708 0.1646 7.5007E-05 1.1457 0.00052208 455.70247195305484 35.631 0.3951 31.438 31.235 31.63 -4.1928 38 24 2 0 0 0 0.0082281 1 20649 20649 92.822 41.967 1 6921000 64994 6383 43300 44274 75837 75837 1121 -0.0681011603363686 TPAPGYPSY 9 Unmodified _TPAPGYPSY_ 0 0 0 nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7249145507812 2 476.724175 951.433798 0.26769 0.00012762 0.78557 0.0003745 1.0533 0.00050212 476.72443127789427 37.986 0.32261 37.986 37.806 38.129 0 38 15 3 0 0 0 0.042911 1 20222 20222 48.346 12.302 1 5412200 64995 16174 43301 44275 75838 75838 -0.04386183264853116 TPAPGYPSY 9 Unmodified _TPAPGYPSY_ 0 0 0 nc|ENSG00000126768|O60830-2|TIMM17B;ENST00000466995.5_1_X:48751014-48751375:-|nuORF;ENST00000472645.1_1_X:48751014-48754386:-|nuORF;ENSG00000126768|ENST00000696123|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B nc|ENSG00000126768|O60830-2|TIMM17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4413452148438 1 952.441074 951.433798 -0.24223 -0.00023071 1.4401 0.0013716 1.1979 0.0011409 952.4427977766599 38.01 0.24277 38.01 37.846 38.089 0 18 11 2 0 0 0 0.12424 1 20227 20227 30.637 5.2372 1 1017900 64996 16174 43301 44275 75839 75839 -0.04386183264853116 TPAPPDLTL 9 Unmodified _TPAPPDLTL_ 0 0 0 nc|ENSG00000142102|Q32M88-2|PGGHG;ENST00000474221.5_1_11:289135-291269:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG nc|ENSG00000142102|Q32M88-2|PGGHG nc|ENSG00000142102|Q32M88-2|PGGHG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.7561340332031 2 462.755475 923.496398 0.58065 0.0002687 0.21352 9.8806E-05 0.79417 0.00036751 462.75542023586894 62.754 0.28463 62.754 62.611 62.895 0 18 11 2 0 0 0 0.1773 1 35008 35008 25.399 2.2509 1 1251700 64997 5391 43302 44276 75840 75840 0.031589628033202644 TPAPPGPAT 9 Unmodified _TPAPPGPAT_ 0 0 0 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.7134704589844 2 404.713611 807.412668 -0.46537 -0.00018834 -3.378 -0.0013671 -3.8433 -0.0015554 404.71385631224024 24.784 0.26681 24.784 24.65 24.916 0 30 13 3 0 0 0 0.095405 1 12644 12644 34.102 3.8776 1 1680000 64998 5827 43303 44277 75841 75841 0.0012585142628722679 TPAPPGPATM 10 Oxidation (M) _TPAPPGPATM(Oxidation (M))_ TPAPPGPATM(1) TPAPPGPATM(110) 0 0 1 nc|ENSG00000147140|Q15233-2|NONO;ENSG00000147140|ENST00000276079|NONO nc|ENSG00000147140|Q15233-2|NONO nc|ENSG00000147140|Q15233-2|NONO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2310791015625 2 478.23131 954.448068 -0.24028 -0.00011491 0.16288 7.7895E-05 -0.077397 -3.7014E-05 478.2313420097724 25.095 0.31399 25.095 24.946 25.26 0 58 29 3 0 0 0 0.0014571 2 12888 12791;12888 111.29 43.206 1 5541500 64999 5827 43304 44278 75842;75843 75843 1049 -0.03097854108204956 TPAPPTHAL 9 Unmodified _TPAPPTHAL_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.746826171875 2 452.747985 903.481417 -0.42688 -0.00019327 0.046794 2.1186E-05 -0.38009 -0.00017208 452.7479971605517 30.493 0.32383 30.493 30.305 30.628 0 44 15 4 0 0 0 0.0031966 2 15787 15787;15894 125.62 74.77 1 25357000 65000 7374 43305 44279 75844;75845 75844 0.025815157259899024 TPAPPTHAL 9 Unmodified _TPAPPTHAL_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.74853515625 2 452.747985 903.481417 0.45549 0.00020622 0.93035 0.00042121 1.3858 0.00062744 452.7485588886314 30.498 0.2414 30.403 30.266 30.507 -0.094818 13 8 2 0 0 0 0.042911 1 15830 15830 48.346 19.859 1 1773200 65001 7374 43305 44279 75846 75846 0.025815157259899024 TPAPPTHAL 9 Unmodified _TPAPPTHAL_ 0 0 0 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 ENSG00000165684|ENST00000684778|SNAPC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.7488098144531 2 452.747985 903.481417 0.98315 0.00044512 -0.18099 -8.1944E-05 0.80216 0.00036318 452.7479774372 34.648 0.53677 30.553 30.301 30.838 -4.0951 94 31 4 0 0 0 0.0036082 3 19921 19921;20053;20177 123.45 79.044 1 113500000 65002 7374 43305 44279 75847;75848;75849 75847 0.025815157259899024 TPAPRPAVL 9 Unmodified _TPAPRPAVL_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2788391113281 2 461.279452 920.544351 -0.61643 -0.00028435 -1.2709 -0.00058626 -1.8874 -0.00087061 461.27880197873463 36.054 0.27541 35.819 35.718 35.994 -0.23451 18 12 2 0 0 0 0.044011 1 18920 18920 47.749 9.7747 1 3745400 65003 11266 43306 44280 75850 75850 0.08090081514046688 TPAPRPAVL 9 Unmodified _TPAPRPAVL_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2799682617188 2 461.279452 920.544351 0.38432 0.00017728 0.066442 3.0648E-05 0.45076 0.00020793 461.2794013837412 40.234 0.35741 35.704 35.595 35.952 -4.5294 45 26 2 0 0 0 0.023481 2 24096 23968;24096 60.074 22.1 1 21289000 65004 11266 43306 44280 75851;75852 75852 0.08090081514046688 TPAPRPAVL 9 Unmodified _TPAPRPAVL_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 461.279452 920.544351 0.61165 0.00028214 -1.5113 -0.00069714 -0.89967 -0.000415 461.27844060742774 35.95 0.19579 35.95 35.836 36.032 0 0.12565 -0.00077283 NaN 60.074 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2086000 65005 11266 43306 44280 0.08090081514046688 TPAPRPLLL 9 Unmodified _TPAPRPLLL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.3119201660156 2 489.310752 976.606951 1.0193 0.00049875 0.4512 0.00022078 1.4705 0.00071953 489.31083591828036 57.318 0.37588 57.252 57.119 57.494 -0.066036 38 18 3 0 0 0 0.028475 2 31187 31187;31290 56.177 30.778 1 8589000 65006 2666 43307 44281 75853;75854 75853 0.11771227582244137 TPAPRPLLL 9 Unmodified _TPAPRPLLL_ 0 0 0 ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 ENSG00000109686|ENST00000604030|SH3D19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.3115234375 2 489.310752 976.606951 1.5742 0.00077028 -0.5765 -0.00028209 0.9977 0.00048819 489.3103943539373 62.476 0.47125 56.301 56.073 56.544 -6.1757 50 24 3 0 0 0 0.023481 2 40368 40241;40368 60.074 22.349 1 28100000 65007 2666 43307 44281 75855;75856 75856 0.11771227582244137 TPAPVPTSL 9 Unmodified _TPAPVPTSL_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.49365234375 1 882.49311 881.485833 0.34669 0.00030595 0.049619 4.3788E-05 0.39631 0.00034974 882.4931082869497 51.564 0.29668 51.564 51.393 51.689 0 20 13 2 0 0 0 0.0071894 1 28443 28443 111.29 33.138 1 1800700 65008 3951 43308 44282 75857 75857 0.04034980148901468 TPAPVPTSL 9 Unmodified _TPAPVPTSL_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7506103515625 2 441.750193 881.485833 0.52654 0.0002326 0.14763 6.5218E-05 0.67417 0.00029782 441.7502418769022 51.557 0.31769 51.557 51.393 51.71 0 23 14 2 0 0 0 0.0083938 1 28446 28446 108 26.384 1 4455600 65009 3951 43308 44282 75858 75858 0.04034980148901468 TPAPVPTSL 9 Unmodified _TPAPVPTSL_ 0 0 0 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 ENSG00000126461|ENST00000360565|SCAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.7508544921875 2 441.750193 881.485833 1.0275 0.00045388 0.14492 6.402E-05 1.1724 0.0005179 441.7503080634622 59.495 0.36903 53.38 53.188 53.557 -6.1147 27 19 2 0 0 0 0.0031966 1 38177 38177 125.62 28.55 1 16985000 65010 3951 43308 44282 75859 75859 0.04034980148901468 TPAQIVEKF 9 Unmodified _TPAQIVEKF_ 0 0 0 nc|ENSG00000120341|Q96JE7-2|SEC16B;ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF nc|ENSG00000120341|Q96JE7-2|SEC16B nc|ENSG00000120341|Q96JE7-2|SEC16B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7900390625 2 516.78985 1031.56515 -0.020738 -1.0717E-05 -0.30643 -0.00015836 -0.32717 -0.00016908 516.7895724738794 48.898 0.3267 48.898 48.736 49.062 0 33 15 3 0 0 0 0.0088735 1 26863 26863 104.48 71.699 1 5856200 65011 3513 43309 44283 75860 75860 0.05062627103052364 TPAQIVEKF 9 Unmodified _TPAQIVEKF_ 0 0 0 nc|ENSG00000120341|Q96JE7-2|SEC16B;ENSG00000120341|ENST00000308284|SEC16B;ENST00000464428.2_1_1:177898995-177929556:-|nuORF;ENST00000466953.6_1_1:177898995-177928232:-|nuORF nc|ENSG00000120341|Q96JE7-2|SEC16B nc|ENSG00000120341|Q96JE7-2|SEC16B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.790771484375 2 516.78985 1031.56515 0.428 0.00022119 0.42257 0.00021838 0.85058 0.00043957 516.7900981900483 49.217 0.46606 48.846 48.539 49.005 -0.37172 43 22 3 0 0 0 0.022653 1 26422 26422 60.899 34.631 1 3534700 65012 3513 43309 44283 75861 75861 0.05062627103052364 TPARKEISL 9 Unmodified _TPARKEISL_ 0 0 0 nc|ENSG00000170085|Q8NDZ2|SIMC1;ENSG00000170085|ENST00000429602|SIMC1 nc|ENSG00000170085|Q8NDZ2|SIMC1 nc|ENSG00000170085|Q8NDZ2|SIMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8003234863281 2 507.800749 1013.58694 0.37643 0.00019115 0.48791 0.00024776 0.86434 0.00043891 507.80112972337395 28.062 0.27022 24.913 24.788 25.059 -3.1482 32 14 3 0 0 0 0.022461 1 15595 15595 61.09 13.341 1 9543300 65013 7948 43310 44284 75862 75862 0.0806943185162936 TPARLLPR 8 Unmodified _TPARLLPR_ 0 0 0 REV__ENST00000233616.8_1_2:74691689-74691761:-|nuORF REV__ENST00000233616.8_1_2:74691689-74691761:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2933349609375 2 462.292894 922.571235 1.3719 0.0006342 -0.076393 -3.5316E-05 1.2955 0.00059888 462.29291285619416 46.619 0.24032 46.586 46.472 46.712 -0.033417 18 11 2 0 0 0 0.30525 1 25082 25082 54.774 8.7526 1 2601600 + 65014 24823 43311 44285 75863 75863 0.10685190125241206 TPARPGRGAF 10 Unmodified _TPARPGRGAF_ 0 0 0 REV__ENST00000559946.1_1_14:103021444-103021741:+|nuORF REV__ENST00000559946.1_1_14:103021444-103021741:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.3032836914062 2 515.283057 1028.55156 NaN NaN NaN NaN NaN NaN NaN 18.111 1 15.49 14.99 15.99 -2.6215 0 0 0 0.83398 1 9520 9520 10.824 0 1 + 65015 28822 43312 44286 75864 75864 0.038428141144549954 TPARQLRQ 8 Unmodified _TPARQLRQ_ 0 0 0 ENST00000609436.1_1_10:65225198-65225663:+|nuORF ENST00000609436.1_1_10:65225198-65225663:+|nuORF ENST00000609436.1_1_10:65225198-65225663:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2838745117188 2 485.283057 968.551562 0.20116 9.7618E-05 0.29416 0.00014275 0.49532 0.00024037 485.2833317631398 15.147 0.12939 12.619 12.53 12.659 -2.5273 24 17 2 0 0 0 0.78849 1 7709 7709 9.3474 0 1 2397200 65016 15879 43313 44287 75865 75865 0.06602814114478406 TPARSLEEF 9 Unmodified _TPARSLEEF_ 0 0 0 nc|ENSG00000112062|Q16539-5|MAPK14;nc|ENSG00000112062|Q16539-3|MAPK14;nc|ENSG00000112062|Q16539-4|MAPK14;nc|ENSG00000112062|Q16539-2|MAPK14;ENSG00000112062|ENST00000229794|MAPK14 nc|ENSG00000112062|Q16539-5|MAPK14 nc|ENSG00000112062|Q16539-5|MAPK14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2669067382812 2 525.266739 1048.51892 0.85031 0.00044664 -1.9246 -0.0010109 -1.0743 -0.0005643 525.2661408665508 38.768 0.28217 38.768 38.598 38.88 0 32 12 3 0 0 0 0.012228 1 20727 20727 74.2 32.36 1 7896900 65017 2854 43314 44288 75866 75866 -0.00339437799038933 TPASAGHVW 9 Unmodified _TPASAGHVW_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.22998046875 2 463.229959 924.445365 0.69551 0.00032218 -0.19571 -9.0657E-05 0.4998 0.00023152 463.2297858952565 31.362 0.26865 31.362 31.194 31.463 0 30 12 3 0 0 0 0.042911 1 16372 16372 48.346 18.121 1 8185700 65018 3847 43315 44289 75867 75867 -0.019879414508636728 TPASAGHVW 9 Unmodified _TPASAGHVW_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2312927246094 2 463.229959 924.445365 0.098695 4.5718E-05 0.27594 0.00012782 0.37463 0.00017354 463.23030378817066 31.337 0.22394 31.234 31.109 31.333 -0.10269 14 8 2 0 0 0 0.0083087 1 16282 16282 97.075 39.603 1 2797600 65019 3847 43315 44289 75868 75868 -0.019879414508636728 TPASAGHVW 9 Unmodified _TPASAGHVW_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2304992675781 2 463.229959 924.445365 0.89111 0.00041279 0.060001 2.7794E-05 0.95111 0.00044058 463.229993938624 34.755 0.44421 30.66 30.438 30.882 -4.0951 72 26 4 0 0 0 0.0021514 3 20087 19962;20087;20214 131.3 67.061 1 64824000 65020 3847 43315 44289 75869;75870;75871 75870 -0.019879414508636728 TPASHTWAS 9 Unmodified _TPASHTWAS_ 0 0 0 ENST00000226004.7_1_17:41847131-41852211:-|nuORF ENST00000226004.7_1_17:41847131-41852211:-|nuORF ENST00000226004.7_1_17:41847131-41852211:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.223876953125 2 479.224874 956.435195 -0.47664 -0.00022842 -0.39165 -0.00018769 -0.86829 -0.00041611 479.2245342389552 27.441 0.23222 27.441 27.32 27.552 0 30 11 4 0 0 0 0.042911 1 14109 14109 48.346 21.462 1 11445000 65021 11047 43316 44290 75872 75872 -0.044765491760927034 TPASLLAAY 9 Unmodified _TPASLLAAY_ 0 0 0 ENST00000533519.1_1_11:65632648-65633520:+|nuORF;ENSG00000172732|ENST00000308110|MUS81 ENST00000533519.1_1_11:65632648-65633520:+|nuORF ENST00000533519.1_1_11:65632648-65633520:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4998168945312 1 906.49311 905.485833 -0.065556 -5.9426E-05 1.6233 0.0014715 1.5578 0.0014121 906.4952402853056 64.95 0.30134 64.466 64.274 64.575 -0.48428 22 13 2 0 0 0 0.038285 1 35388 35388 50.855 14.811 1 898280 65022 8247 43317 44291 75873 75873 0.02930980148892104 TPASPQPFY 9 Unmodified _TPASPQPFY_ 0 0 0 nc|ENSG00000145817|Q969M3-2|YIPF5;ENSG00000145817|ENST00000274496|YIPF5;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2457580566406 2 504.245275 1006.476 0.72625 0.00036621 -0.009121 -4.5992E-06 0.71712 0.00036161 504.24523119523553 47.362 0.28204 47.362 47.212 47.494 0 22 12 2 0 0 0 0.16226 1 25940 25940 26.884 0 1 1579800 65023 5728 43318 44292 75874 75874 -0.02698207856474255 TPASPQPFY 9 Unmodified _TPASPQPFY_ 0 0 0 nc|ENSG00000145817|Q969M3-2|YIPF5;ENSG00000145817|ENST00000274496|YIPF5;ENST00000508754.1_1_5:143543641-143549519:-|nuORF;nc|ENSG00000145817|Q969M3-3|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 nc|ENSG00000145817|Q969M3-2|YIPF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2455444335938 2 504.245275 1006.476 0.14491 7.3072E-05 1.0354 0.00052207 1.1803 0.00059514 504.2459746934586 47.737 0.27283 47.384 47.223 47.496 -0.3526 16 12 2 0 0 0 0.042911 1 25591 25591 48.346 21.462 1 1940900 65024 5728 43318 44292 75875 75875 -0.02698207856474255 TPATPTSQF 9 Unmodified _TPATPTSQF_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2351684570312 2 475.234907 948.455261 0.75666 0.00035959 -0.22085 -0.00010496 0.53581 0.00025464 475.2349179300632 36.561 0.40829 36.561 36.409 36.818 0 41 19 3 0 0 0 0.016184 1 19383 19383 67.344 39.715 1 8741600 65025 3548 43319 44293 75876 75876 -0.021027982361374598 TPATPTSQF 9 Unmodified _TPATPTSQF_ 0 0 0 ENSG00000120875|ENST00000240100|DUSP4;nc|ENSG00000120875|Q13115-2|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 ENSG00000120875|ENST00000240100|DUSP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2359008789062 2 475.234907 948.455261 1.104 0.00052466 -0.3321 -0.00015783 0.77189 0.00036683 475.2347060203667 42.628 0.28668 37.943 37.82 38.107 -4.6846 29 18 2 0 0 0 0.038285 1 25790 25790 50.855 33.913 1 16912000 65026 3548 43319 44293 75877 75877 -0.021027982361374598 TPATSVPRL 9 Unmodified _TPATSVPRL_ 0 0 0 ENST00000261023.7_2_2:187454800-187466828:+|nuORF ENST00000261023.7_2_2:187454800-187466828:+|nuORF ENST00000261023.7_2_2:187454800-187466828:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7757263183594 2 471.274367 940.53418 0.90174 0.00042497 -0.45965 -0.00021662 0.44209 0.00020835 471.2745454260009 47.899 0.58735 42.665 42.371 42.958 -5.2339 93 35 4 0 0 0 0.2324 1 29762 29762 20.415 0 1 35774000 65027 11232 43320 44294 75878 75878 0.061534737887996016 TPATWKQEY 9 Unmodified _TPATWKQEY_ 0 0 0 ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1 ENSG00000130826|ENST00000369550|DKC1 ENSG00000130826|ENST00000369550|DKC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.27490234375 2 562.274564 1122.53457 0.36064 0.00020278 -0.18021 -0.00010133 0.18043 0.00010145 562.2743008279119 31.487 0.2416 31.487 31.339 31.58 0 24 11 3 0 0 0 0.012228 1 16377 16377 74.2 36.024 1 3223800 65028 4270 43321 44295 75879 75879 -0.021791512819845593 TPAVGRLEV 9 Unmodified _TPAVGRLEV_ 0 0 0 ENSG00000134690|ENST00000373055|CDCA8 ENSG00000134690|ENST00000373055|CDCA8 ENSG00000134690|ENST00000373055|CDCA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2747192382812 2 471.274367 940.53418 0.9462 0.00044592 -0.92777 -0.00043723 0.018431 8.6859E-06 471.27412317324604 42.878 0.36282 42.878 42.663 43.026 0 44 18 3 0 0 0 0.047788 1 23217 23217 45.7 9.5726 1 20697000 65029 4630 43322 44296 75880 75880 0.061534737887996016 TPAVGRLEV 9 Unmodified _TPAVGRLEV_ 0 0 0 ENSG00000134690|ENST00000373055|CDCA8 ENSG00000134690|ENST00000373055|CDCA8 ENSG00000134690|ENST00000373055|CDCA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2744750976562 2 471.274367 940.53418 0.90174 0.00042497 -0.45965 -0.00021662 0.44209 0.00020835 471.2745454260009 47.899 0.58735 42.665 42.371 42.958 -5.2339 93 35 4 0 0 0 0.13231 1 29894 29894 29.841 3.5724 1 35774000 65030 4630 43322 44296 75881 75881 0.061534737887996016 TPAVVSERL 9 Unmodified _TPAVVSERL_ 0 0 0 ENSG00000118181|ENST00000527673|RPS25 ENSG00000118181|ENST00000527673|RPS25 ENSG00000118181|ENST00000527673|RPS25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2794189453125 2 486.279649 970.544745 0.20112 9.7798E-05 -0.15689 -7.6293E-05 0.044224 2.1505E-05 486.27967995991077 37.789 0.18539 37.789 37.68 37.865 0 15 8 2 0 0 0 0.044296 1 20152 20152 47.594 14.809 1 1209900 65031 3354 43323 44297 75882 75882 0.05829456443234449 TPCAGVRF 8 Carbamidomethyl (C) _TPC(Carbamidomethyl (C))AGVRF_ TPC(1)AGVRF TPC(54)AGVRF 0 1 0 REV__ENST00000494512.1_1_14:45722570-45722729:-|nuORF REV__ENST00000494512.1_1_14:45722570-45722729:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2260437011719 2 454.226362 906.438172 0.1166 5.2962E-05 -0.18087 -8.2156E-05 -0.064271 -2.9194E-05 454.22623522028647 25.964 0.31187 23.013 22.857 23.169 -2.9511 30 20 2 0 0 0 0.31612 2 14192 14192;14309 53.576 11.481 1 11699000 + 65032 27936 43324 44298 75883;75884 75883 1060 -0.018789973229331736 TPCFEKKM 8 Unmodified _TPCFEKKM_ 0 0 0 REV__ENST00000511800.5_1_4:99407953-99428854:-|nuORF REV__ENST00000511800.5_1_4:99407953-99428854:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.7737426757812 2 492.238081 982.461609 0.59155 0.00029118 1.5109 0.00074371 2.1024 0.0010349 492.2386424922521 43.88 0.39198 39.116 38.843 39.235 -4.7648 38 24 3 0 0 0 8.7369 1 26635 26635 20.871 5.024 1 8262300 + 65033 28162 43325 44299 75885 75885 -0.030323196006179387 TPCPGPFLRY 10 Carbamidomethyl (C) _TPC(Carbamidomethyl (C))PGPFLRY_ TPC(1)PGPFLRY TPC(100)PGPFLRY 0 1 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF;ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.2994384765625 2 604.300059 1206.58556 0.21521 0.00013005 -0.85796 -0.00051846 -0.64275 -0.00038841 604.2995017213498 54.666 0.32296 54.599 54.443 54.765 -0.066936 45 15 4 0 0 0 0.0045909 2 29670 29670;29771 99.799 77.063 1 8281100 65034 4295 43326 44300 75886;75887 75886 433 -0.009465255088116464 TPCPGPFLRY 10 Carbamidomethyl (C) _TPC(Carbamidomethyl (C))PGPFLRY_ 0 1 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENST00000476922.5_1_20:33464445-33514898:+|nuORF;ENST00000461051.1_1_20:33463718-33470793:+|nuORF;ENST00000497927.5_1_20:33462930-33496606:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 604.300059 1206.58556 0.20164 0.00012185 -2.1269 -0.0012853 -1.9252 -0.0011634 604.2983710848324 54.996 0.096939 54.518 54.491 54.588 -0.47798 -0.040355 -0.0015087 NaN 99.799 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 820990 65035 4295 43326 44300 433 -0.009465255088116464 TPCPPYWE 8 Unmodified _TPCPPYWE_ 0 0 0 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 MSMS AL20221201_MKP_PDAC_01 4 496.7127380371094 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 14.518 1 12.015 11.515 12.515 -2.5029 0 0 0 0.97444 1 7379 7379 2.5775 0 1 65036 5504 43327 44301 75888 75888 -0.08509525653983019 TPCPPYWE 8 Unmodified _TPCPPYWE_ 0 0 0 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 MSMS AL20221201_MKP_PDAC_01 4 496.7127685546875 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 16.252 1 13.696 13.196 14.196 -2.557 0 0 0 0.97444 1 8406 8406 2.5775 0.27475 1 65037 5504 43327 44301 75889 75889 -0.08509525653983019 TPCTPHTTY 9 Carbamidomethyl (C) _TPC(Carbamidomethyl (C))TPHTTY_ TPC(1)TPHTTY TPC(140)TPHTTY 0 1 0 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 ENSG00000213445|ENST00000534313|SIPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2361450195312 2 539.237124 1076.45969 0.13467 7.2617E-05 -2.7237 -0.0014687 -2.589 -0.0013961 539.2354523395642 24.536 0.33866 21.682 21.507 21.845 -2.8545 39 18 3 0 0 0 0.0014543 2 13339 13339;13449 136.33 102.23 1 5450000 65038 10435 43328 44302 75890;75891 75890 940 -0.0754765708488776 TPDCNKQGFID 11 Unmodified _TPDCNKQGFID_ 0 0 0 ENSG00000145692|ENST00000274353|BHMT ENSG00000145692|ENST00000274353|BHMT ENSG00000145692|ENST00000274353|BHMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2785034179688 2 619.27952 1236.54449 0.67199 0.00041615 -2.5516 -0.0015801 -1.8796 -0.001164 619.2779726752211 40.72 0.18587 40.417 40.275 40.461 -0.30304 13 8 2 0 0 0 0.50515 1 21537 21537 16.149 3.1066 1 1720100 65039 5712 43329 44303 75892 75892 -0.06432331338942276 TPDDVAISY 9 Unmodified _TPDDVAISY_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.463623046875 1 980.457118 979.449842 0.31283 0.00030671 1.547 0.0015167 1.8598 0.0018235 980.4586122463622 46.602 0.23911 46.602 46.523 46.762 0 16 10 2 0 0 0 0.070838 1 25462 25462 39.957 24.11 1 862230 65040 9914 43330 44304 75893 75893 -0.04070521818607631 TPDDVAISY 9 Unmodified _TPDDVAISY_ 0 0 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7326965332031 2 490.732197 979.449842 0.41997 0.00020609 1.1724 0.00057533 1.5924 0.00078143 490.7326791486697 46.634 0.36303 46.634 46.436 46.799 0 33 16 3 0 0 0 0.012148 1 25478 25478 74.423 38.379 1 3659800 65041 9914 43330 44304 75894 75894 -0.04070521818607631 TPDECIPEF 9 Unmodified _TPDECIPEF_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.820068359375 3 350.819797 1049.43756 0.28216 9.8986E-05 1.2631 0.00044313 1.5453 0.00054211 350.820148832129 66.517 0.28973 66.517 66.348 66.637 0 32 12 3 0 0 0 0.43463 1 37085 37085 10.8 5.9025 1 2499300 65042 7661 43331 44305 75895 75895 -0.08517881553302686 TPDECIPEF 9 Unmodified _TPDECIPEF_ 0 0 0 ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-4|WDR81 ENSG00000167716|ENST00000409644|WDR81 ENSG00000167716|ENST00000409644|WDR81 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 350.819797 1049.43756 0.33046 0.00011593 0.12891 4.5223E-05 0.45936 0.00016115 350.8199812452004 67.113 0.29827 66.63 66.459 66.758 -0.48286 0.056457 -0.0008207 NaN 10.8 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2092200 65043 7661 43331 44305 -0.08517881553302686 TPDEFPRF 8 Unmodified _TPDEFPRF_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7434387207031 2 504.742899 1007.47125 -0.0683 -3.4474E-05 0.85234 0.00043021 0.78404 0.00039574 504.7434119022424 40.211 0.18491 39.914 39.843 40.028 -0.29716 11 8 2 0 0 0 0.80143 1 21293 21293 5.7604 3.1829 1 1338200 65044 4846 43332 44306 75896 75896 -0.032190919992331146 TPDEIDHVF 9 Unmodified _TPDEIDHVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7535400390625 2 536.750921 1071.48729 0.28863 0.00015492 -1.0709 -0.00057482 -0.7823 -0.0004199 536.750383151755 50.32 0.75725 50.32 49.966 50.724 0 137 35 8 0 0 0 0.0041763 3 27655 27655;27759;27873 120.45 99.579 1 1094300000 65045 8296;16388 43333 44307 75897;75898;75899 75897 -0.04559430552990307 TPDEIDHVF 9 Unmodified _TPDEIDHVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7503051757812 2 536.750921 1071.48729 0.5285 0.00028367 -0.64965 -0.0003487 -0.12115 -6.5027E-05 536.7501278205161 50.799 0.28143 50.386 50.236 50.518 -0.41351 34 13 3 0 0 0 0.0090948 1 27359 27359 85.272 68.159 1 7383500 65046 8296;16388 43333 44307 75900 75900 -0.04559430552990307 TPDEIDHVF 9 Unmodified _TPDEIDHVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7514038085938 2 536.750921 1071.48729 1.1711 0.00062858 -0.59871 -0.00032136 0.57237 0.00030722 536.7508440081081 50.419 0.32462 50.37 50.21 50.535 -0.048824 37 15 3 0 0 0 0.00069393 1 27241 27241 141.83 105.7 1 8629300 65047 8296;16388 43333 44307 75901 75901 -0.04559430552990307 TPDEIDHVF 9 Unmodified _TPDEIDHVF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7511596679688 2 536.750921 1071.48729 0.69266 0.00037178 -0.757 -0.00040632 -0.064348 -3.4539E-05 536.7503180229063 57.038 1.1764 51.062 50.466 51.643 -5.9769 183 67 5 0 0 0 0.0026776 2 36469 36469;36606 128.37 99.284 1 1820799999.9999998 65048 8296;16388 43333 44307 75902;75903 75902 -0.04559430552990307 TPDETKLKM 9 Unmodified _TPDETKLKM_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.855224609375 3 354.854842 1061.5427 1.2914 0.00045826 -1.5189 -0.00053898 -0.22747 -8.0719E-05 354.85419294194253 28.223 0.58142 25.075 24.915 25.497 -3.1482 68 30 3 0 0 0 0.062454 1 15735 15735 39.213 29.669 1 18981000 65049 9805 43334 44308 75904 75904 0.014386596431222642 TPDETKLKM 9 Unmodified _TPDETKLKM_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 354.854842 1061.5427 -0.41972 -0.00014894 -0.44553 -0.0001581 -0.86526 -0.00030704 354.8549297760508 25.23 0.17838 25.23 25.147 25.326 0 0.07722 0.00082638 NaN 39.213 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 913370 65050 9805 43334 44308 0.014386596431222642 TPDEVVELENQ 11 Unmodified _TPDEVVELENQ_ 0 0 0 nc|ENSG00000197620|Q8TE69-2|EOLA1;ENSG00000197620|ENST00000393985|EOLA1;ENSG00000197021|ENST00000370406|EOLA2 nc|ENSG00000197620|Q8TE69-2|EOLA1 nc|ENSG00000197620|Q8TE69-2|EOLA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3043823242188 2 636.80134 1271.58813 0.031659 2.016E-05 3.0578 0.0019472 3.0894 0.0019674 636.8030932236611 65.719 0.26363 65.719 65.475 65.738 0 16 10 2 0 0 0 0.71728 1 36607 36607 5.7319 0 1 1001200 65051 9898 43335 44309 75905 75905 -0.03680443360758545 TPDEWALLDP 10 Unmodified _TPDEWALLDP_ 0 0 0 nc|ENSG00000214189|Q6ZQV5-2|ZNF788P;nc|ENSG00000214189|Q6ZQV5|ZNF788P nc|ENSG00000214189|Q6ZQV5-2|ZNF788P nc|ENSG00000214189|Q6ZQV5-2|ZNF788P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7786254882812 2 578.779679 1155.5448 0.17402 0.00010072 -2.4419 -0.0014133 -2.2678 -0.0013126 578.7778588437093 56.566 0.21041 56.566 56.474 56.685 0 12 8 2 0 0 0 0.63399 1 31476 31476 9.3831 1.473 1 1205800 65052 16542 43336 44310 75906 75906 -0.02674588347417739 TPDGNHFLY 9 Unmodified _TPDGNHFLY_ 0 0 0 ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11 ENST00000560046.1_1_14:24586548-24588423:+|nuORF ENST00000560046.1_1_14:24586548-24588423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2444458007812 2 532.245806 1062.47706 0.30404 0.00016182 4.2852 0.0022808 4.5892 0.0024426 532.2485300970078 43.334 0.17615 43.334 43.183 43.359 0 18 8 4 0 0 0 0.020973 2 23521 23504;23521 62.573 37.899 1 11271000 65053 1886 43337 44311 75907;75908 75908 -0.05167993487566491 TPDIPLRATY 10 Unmodified _TPDIPLRATY_ 0 0 0 ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8116455078125 2 573.811313 1145.60807 0.45494 0.00026105 -0.65403 -0.00037529 -0.19909 -0.00011424 573.810889599731 39.438 0.35118 39.438 39.224 39.575 0 59 16 5 0 0 0 0.5802 1 21072 21072 13.906 0.86358 1 68893000 65054 8109 43338 44312 75909 75909 0.04109397160482331 TPDIPLRATY 10 Unmodified _TPDIPLRATY_ 0 0 0 ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D ENSG00000171492|ENST00000337338|LRRC8D MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.811767578125 2 573.811313 1145.60807 0.63356 0.00036354 -0.061209 -3.5123E-05 0.57235 0.00032842 573.8112971785415 44.821 0.51846 39.969 39.73 40.249 -4.852 112 39 4 0 0 0 0.65023 1 27387 27387 5.7319 0 1 160700000 65055 8109 43338 44312 75910 75910 0.04109397160482331 TPDKIFRYF 9 Unmodified _TPDKIFRYF_ 0 0 0 nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1 nc|ENSG00000107745|Q9BPX6-2|MICU1 nc|ENSG00000107745|Q9BPX6-2|MICU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8824157714844 3 396.213358 1185.61824 0.63446 0.00025138 -0.4501 -0.00017834 0.18436 7.3044E-05 396.2132140407848 58.053 0.33441 57.987 57.795 58.13 -0.066036 37 16 3 0 0 0 0.36964 2 31580 31580;31679 16.566 10.698 1 11852000 65056 2514 43339 44313 75911;75912 75911 0.03286004885694638 TPDKVLIP 8 Unmodified _TPDKVLIP_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.5093688964844 2 441.768386 881.522219 0.31317 0.00013835 0.13724 6.0628E-05 0.45041 0.00019898 441.7694148476371 65.901 0.37322 65.901 65.718 66.091 0 28 19 2 0 0 0 8.7369 1 36852 36852 2.8892 0 1 3353500 65057 5560 43340 44314 75913 75913 0.07671857045625075 TPDLLPEA 8 Unmodified _TPDLLPEA_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.4466552734375 1 855.445825 854.438549 0.058806 5.0305E-05 0.53686 0.00045925 0.59566 0.00050956 855.4466481489719 80.646 0.26026 80.646 80.519 80.779 0 20 12 2 0 0 0 0.31612 1 44755 44755 53.576 9.1686 1 778870 65058 5919 43341 44315 75914 75914 0.0055070087789772515 TPDLLPEAL 9 Unmodified _TPDLLPEAL_ 0 0 0 nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1;nc|ENSG00000148337|Q9ULV3-5|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 nc|ENSG00000148337|Q9ULV3-3|CIZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.76904296875 2 484.768583 967.522613 0.26678 0.00012933 0.44874 0.00021753 0.71551 0.00034686 484.7687980307598 80.675 0.32208 80.675 80.495 80.817 0 31 15 3 0 0 0 0.5029 1 44829 44829 7.2892 2.96 1 1574500 65059 5919 43342 44316 75915 75915 0.037552319747987895 TPDMMEEMYKK 11 Unmodified _TPDMMEEMYKK_ 0 0 0 ENSG00000122406|ENST00000370321|RPL5;ENST00000465511.1_1_11:118431647-118432142:+|nuORF;ENST00000434805.1_1_1:35816564-35817152:+|nuORF ENSG00000122406|ENST00000370321|RPL5 ENSG00000122406|ENST00000370321|RPL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2055053710938 3 468.206558 1401.59784 0.13594 6.3649E-05 0.52917 0.00024776 0.66511 0.00031141 468.2065786092415 16.575 0.248 14.018 13.963 14.211 -2.557 51 38 2 0 0 0 0.71341 1 8708 8708 1.2148 0.10508 1 4029300 65060 3636 43343 44317 75916 75916 -0.08689037942940558 TPDPKRLIQL 10 Unmodified _TPDPKRLIQL_ 0 0 0 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2408752441406 3 394.239796 1179.69756 0.66307 0.00026141 -0.23202 -9.1471E-05 0.43105 0.00016994 394.23916836832535 52.578 0.31918 52.519 52.289 52.608 -0.058918 33 15 3 0 0 0 0.56675 1 28454 28454 12.873 3.1084 1 2908900 65061 16308 43344 44318 75917 75917 0.11489651839860926 TPDPKRLIQL 10 Unmodified _TPDPKRLIQL_ 0 0 0 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 394.239796 1179.69756 1.5995 0.0006306 0.83103 0.00032763 2.4306 0.00095822 394.24007529328713 58.48 0.2502 52.406 52.259 52.509 -6.0745 -0.056556 0.00033819 NaN 12.873 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 6739700 65062 16308 43344 44318 0.11489651839860926 TPDPSRSVF 9 Unmodified _TPDPSRSVF_ 0 0 0 ENSG00000141295|ENST00000290216|SCRN2;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENST00000581645.5_1_17:45915212-45916069:-|nuORF ENSG00000141295|ENST00000290216|SCRN2 ENSG00000141295|ENST00000290216|SCRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2537536621094 2 503.253631 1004.49271 0.95697 0.0004816 0.40698 0.00020481 1.364 0.00068641 503.2541964961222 36.617 0.48594 36.617 36.43 36.916 0 47 23 3 0 0 0 0.037253 1 19401 19401 51.415 11.458 1 9811200 65063 5312 43345 44319 75918 75918 -0.009357069705174581 TPDPSRSVF 9 Unmodified _TPDPSRSVF_ 0 0 0 ENSG00000141295|ENST00000290216|SCRN2;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENST00000581645.5_1_17:45915212-45916069:-|nuORF ENSG00000141295|ENST00000290216|SCRN2 ENSG00000141295|ENST00000290216|SCRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2536315917969 2 503.253631 1004.49271 -0.75412 -0.00037951 1.5387 0.00077437 0.78461 0.00039486 503.2542086261853 36.845 0.27913 36.595 36.45 36.729 -0.2497 22 12 2 0 0 0 0.024189 1 19351 19351 59.368 11.023 1 3443400 65064 5312 43345 44319 75919 75919 -0.009357069705174581 TPDPSRSVF 9 Unmodified _TPDPSRSVF_ 0 0 0 ENSG00000141295|ENST00000290216|SCRN2;nc|ENSG00000141295|Q96FV2-2|SCRN2;ENST00000581645.5_1_17:45915212-45916069:-|nuORF ENSG00000141295|ENST00000290216|SCRN2 ENSG00000141295|ENST00000290216|SCRN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7556762695312 2 503.253631 1004.49271 1.3482 0.00067846 -1.6499 -0.00083032 -0.30176 -0.00015186 503.25278619671434 41.675 0.42995 37.067 36.833 37.262 -4.6079 63 28 3 0 0 0 0.029718 2 24967 24967;25104 55.503 11.676 1 23824000 65065 5312 43345 44319 75920;75921 75920 -0.009357069705174581 TPDQELVP 8 Unmodified _TPDQELVP_ 0 0 0 nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;ENSG00000172661|ENST00000623400|WASHC2C nc|ENSG00000172661|Q9Y4E1-5|WASHC2C nc|ENSG00000172661|Q9Y4E1-5|WASHC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4497680664062 1 898.451639 897.444362 -0.030498 -2.7401E-05 0.3195 0.00028706 0.28901 0.00025966 898.4514131362731 65.047 0.27515 65.047 64.919 65.194 0 22 12 2 0 0 0 0.18875 1 36239 36239 74.423 16.951 1 1656400 65066 8240 43346 44320 75922 75922 -0.008462006104309694 TPDSSTLKIFY 11 Unmodified _TPDSSTLKIFY_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3;ENST00000601881.1_1_19:38610303-38621413:+|nuORF ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3307495117188 2 636.329536 1270.64452 0.7846 0.00049926 -0.7157 -0.00045542 0.068901 4.3844E-05 636.8306358326639 68.768 0.40251 62.592 62.42 62.822 -6.1757 33 21 2 0 0 0 2.1714E-06 1 44903 44903 128.87 106.13 1 16228000 65067 2360 43347 44321 75923 75923 0.020022292665316854 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2369995117188 3 400.903072 1199.68739 0.071589 2.87E-05 -0.34474 -0.00013821 -0.27315 -0.00010951 400.9028008584856 45.705 0.21753 45.705 45.586 45.803 0 19 10 2 0 0 0 0.33612 1 24921 24921 20.411 6.2402 1 5491900 65068 6649 43348 44322 75924 75924 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2381896972656 3 400.903072 1199.68739 0.15564 6.2398E-05 -0.14533 -5.8261E-05 0.010319 4.1368E-06 400.90296957319947 45.901 0.28893 45.577 45.447 45.735 -0.32425 46 16 4 0 0 0 0.038834 1 24502 24502 38.161 2.1648 1 93554000 65069 6649 43348 44322 75925 75925 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8501586914062 2 600.85097 1199.68739 0.14909 8.9582E-05 -0.49983 -0.00030032 -0.35074 -0.00021074 600.850611784633 45.899 0.19975 45.575 45.478 45.678 -0.32425 25 10 3 0 0 0 2.1186E-09 1 24526 24526 116.75 57.732 1 23804000 65070 6649 43348 44322 75926 75926 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.9033813476562 3 400.903072 1199.68739 -0.065449 -2.6239E-05 0.53997 0.00021648 0.47452 0.00019024 400.90325129226636 45.637 0.2886 45.609 45.456 45.745 -0.028011 36 14 3 0 0 0 0.17129 1 24488 24488 23.34 5.4765 1 25784000 65071 6649 43348 44322 75927 75927 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8516235351562 2 600.85097 1199.68739 -0.014531 -8.7311E-06 0.37226 0.00022367 0.35773 0.00021494 600.8512060839387 45.634 0.19256 45.606 45.509 45.702 -0.028011 15 9 2 0 0 0 0.012958 1 24531 24531 64.692 26.077 1 5722600 65072 6649 43348 44322 75928 75928 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.85205078125 2 600.85097 1199.68739 0.35217 0.0002116 0.40291 0.00024209 0.75508 0.00045369 600.8511757006115 50.954 0.45775 45.305 45.071 45.528 -5.649 69 27 3 0 0 0 5.2517E-06 2 31934 31934;32066 94.801 43.964 1 125750000 65073 6649 43348 44322 75929;75930 75929 0.0955304411461384 TPDTGRILSKL 11 Unmodified _TPDTGRILSKL_ 0 0 0 ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF ENSG00000159352|ENST00000368884|PSMD4 ENSG00000159352|ENST00000368884|PSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.9035949707031 3 400.903072 1199.68739 1.1396 0.00045688 0.38717 0.00015522 1.5268 0.0006121 400.9030448470429 50.949 0.45809 45.3 45.053 45.511 -5.649 92 27 4 0 0 0 0.055321 2 32025 32025;32156 35.793 8.0501 1 406890000 65074 6649 43348 44322 75931;75932 75931 0.0955304411461384 TPDVTVYKI 9 Unmodified _TPDVTVYKI_ 0 0 0 REV__ENSG00000095464|ENST00000371447|PDE6C REV__ENSG00000095464|ENST00000371447|PDE6C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7672729492188 2 518.289682 1034.56481 0.39236 0.00020336 0.28074 0.00014551 0.6731 0.00034886 518.2892209094988 52.751 0.58524 52.751 52.353 52.938 0 47 26 3 0 0 0 0.16785 1 29046 29046 11.64 2.2572 1 4833800 + 65075 17942 43349 44323 75933 75933 0.04891207383184337 TPDYEDVF 8 Unmodified _TPDYEDVF_ 0 0 0 REV__ENSG00000213281|ENST00000369535|NRAS REV__ENSG00000213281|ENST00000369535|NRAS MSMS AL20221201_MKP_PDAC_01 4 492.7720642089844 2 493.211098 984.407643 NaN NaN NaN NaN NaN NaN NaN 63.242 1 57.067 56.567 57.567 -6.1757 0 0 0 0.93587 1 40860 40860 13.508 3.3245 1 + 65076 24280 43350 44324 75934 75934 -0.08518497226987165 TPECCHCCCAP 11 Unmodified _TPECCHCCCAP_ 0 0 0 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 REV__ENSG00000204887|ENST00000377747|KRTAP1-4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.9288330078125 2 583.681432 1165.34831 NaN NaN NaN NaN NaN NaN NaN 18.899 1 18.905 18.405 19.405 0.0060463 0 0 0 0.94301 1 9594 9594 0.35063 0.35063 1 + 65077 24205 43351 44325 75935 75935 -0.22774822371980008 TPEDIFPV 8 Unmodified _TPEDIFPV_ 0 0 0 REV__ENST00000401578.2_1_6:80777029-80777566:-|nuORF REV__ENST00000401578.2_1_6:80777029-80777566:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2347412109375 2 459.234376 916.454199 NaN NaN NaN NaN NaN NaN NaN 70.168 1 70.168 69.668 70.668 0 0 0 0 0.73801 1 39099 39099 26.341 6.9023 1 + 65078 26609 43352 44326 75936 75936 -0.007370126050432191 TPEEEAQYK 9 Unmodified _TPEEEAQYK_ 0 0 0 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 ENSG00000178372|ENST00000380332|CALML5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7540893554688 2 547.753661 1093.49277 NaN NaN NaN NaN NaN NaN NaN 17.223 1 17.228 16.728 17.728 0.0050564 0 0 0 0.61214 1 8678 8678 12.241 4.6317 1 65079 8747 43353 44327 75937 75937 -0.05023751761177664 TPEEFFRIF 9 Unmodified _TPEEFFRIF_ 0 0 0 nc|ENSG00000049130|P21583-3|KITLG;nc|ENSG00000049130|P21583-2|KITLG;ENSG00000049130|ENST00000644744|KITLG nc|ENSG00000049130|P21583-3|KITLG nc|ENSG00000049130|P21583-3|KITLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3012084960938 2 593.300581 1184.58661 0.53647 0.00031829 -0.027178 -1.6125E-05 0.50929 0.00030216 593.3007502363802 86.731 0.42477 86.228 86.044 86.469 -0.50318 38 16 4 0 0 0 0.014417 1 47433 47433 69.105 39.264 1 2444700 65080 704 43354 44328 75938 75938 0.001700121317526282 TPEEFMLVY 9 Oxidation (M) _TPEEFM(Oxidation (M))LVY_ TPEEFM(1)LVY TPEEFM(42)LVY 0 0 1 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1;ENST00000472490.1_1_17:41219583-41223049:-|nuORF nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7640380859375 2 572.765183 1143.51581 0.22238 0.00012737 -0.014794 -8.4732E-06 0.20759 0.0001189 572.7653106497042 71.92 0.34012 71.92 71.734 72.074 0 40 15 3 0 0 0 0.06187 1 40013 40013 42.095 25.152 1 4814500 65081 455 43355 44329 75939 75939 60 -0.05020448968070923 TPEEFMLVY 9 Oxidation (M) _TPEEFM(Oxidation (M))LVY_ TPEEFM(1)LVY TPEEFM(51)LVY 0 0 1 nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;nc|ENSG00000012048|P38398-6|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1;ENST00000472490.1_1_17:41219583-41223049:-|nuORF nc|ENSG00000012048|P38398-8|BRCA1 nc|ENSG00000012048|P38398-8|BRCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7652587890625 2 572.765183 1143.51581 0.33735 0.00019322 0.21133 0.00012104 0.54868 0.00031426 572.765375786638 72.213 0.31239 72.213 72.074 72.387 0 38 13 3 0 0 0 0.038285 1 40216 40216 50.855 35.008 1 3277800 65082 455 43355 44329 75940 75940 60 -0.05020448968070923 TPEEIARFLY 10 Unmodified _TPEEIARFLY_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.824462890625 2 619.824421 1237.63429 0.49774 0.00030851 -0.30853 -0.00019124 0.18921 0.00011728 619.8247085957667 71.107 0.35796 70.63 70.389 70.747 -0.47735 47 15 4 0 0 0 0.03037 2 38856 38856;38956 67.838 33.698 1 3270100 65083 2323 43356 44330 75941;75942 75941 0.02497666331964865 TPEEIARFLY 10 Unmodified _TPEEIARFLY_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MSMS AL20221201_MKP_PDAC_01 4 619.826171875 2 619.824421 1237.63429 NaN NaN NaN NaN NaN NaN NaN 82.409 1 76.233 75.733 76.733 -6.1757 0 0 0 0.024108 1 54131 54131 84.522 51.737 1 65084 2323 43356 44330 75943 75943 0.02497666331964865 TPEEIARFLY 10 Unmodified _TPEEIARFLY_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MSMS AL20221201_MKP_PDAC_01 4 619.8243408203125 2 619.824421 1237.63429 NaN NaN NaN NaN NaN NaN NaN 82.629 1 76.453 75.953 76.953 -6.1757 0 0 0 0.00081198 1 54286 54286 110.79 55.29 1 65085 2323 43356 44330 75944 75944 0.02497666331964865 TPEEIARFLY 10 Unmodified _TPEEIARFLY_ 0 0 0 nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 nc|ENSG00000105443|Q99418|CYTH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 619.824421 1237.63429 1.0256 0.0006357 -0.95201 -0.00059008 0.073599 4.5619E-05 619.8239985845382 70.503 0.36162 70.538 70.358 70.72 0.035515 -0.045858 -0.00037043 NaN 67.838 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1942200 65086 2323 43356 44330 0.02497666331964865 TPEEIRKTF 9 Unmodified _TPEEIRKTF_ 0 0 0 ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 ENSG00000113558|ENST00000353411|SKP1 ENSG00000113558|ENST00000353411|SKP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.2037658691406 3 374.204751 1119.59242 -0.64359 -0.00024083 -0.64385 -0.00024093 -1.2874 -0.00048177 374.2044170548206 27.243 0.32494 27.243 26.972 27.297 0 19 15 2 0 0 0 0.13639 1 14014 14014 29.437 11.995 1 2825500 65087 2975 43357 44331 75945 75945 0.03741110643431966 TPEEIRKTF 9 Unmodified _TPEEIRKTF_ 0 0 0 ENSG00000113558|ENST00000353411|SKP1;nc|ENSG00000113558|P63208-2|SKP1 ENSG00000113558|ENST00000353411|SKP1 ENSG00000113558|ENST00000353411|SKP1 MSMS AL20221201_MKP_PDAC_01 4 374.2057495117188 3 374.204751 1119.59242 NaN NaN NaN NaN NaN NaN NaN 30.363 1 26.866 26.366 27.366 -3.497 0 0 0 0.1598 1 17133 17133 35.612 21.207 1 65088 2975 43357 44331 75946 75946 0.03741110643431966 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8678588867188 3 388.868027 1163.58225 -0.40279 -0.00015663 0.2259 8.7846E-05 -0.17689 -6.8787E-05 388.8680927581047 21.913 0.48802 21.913 21.716 22.204 0 175 54 5 0 0 0 0.091924 2 11152 11051;11152 39.213 3.6007 1 56633000 65089 5082 43358 44332 75947;75948 75948 0.007005029181982536 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7978515625 2 582.798403 1163.58225 -0.27538 -0.00016049 0.070779 4.125E-05 -0.2046 -0.00011924 582.7984378392505 21.902 0.25501 21.902 21.764 22.019 0 99 37 4 0 0 0 0.044296 2 11160 11060;11160 47.594 3.822 1 11323000 65090 5082 43358 44332 75949;75950 75950 0.007005029181982536 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8684997558594 3 388.868027 1163.58225 0.060118 2.3378E-05 -1.2947 -0.00050348 -1.2346 -0.0004801 388.86816418984 21.779 0.34268 21.792 21.598 21.941 0.013796 29 21 2 0 0 0 0.29507 1 11183 11183 12.856 2.5407 1 1480300 65091 5082 43358 44332 75951 75951 0.007005029181982536 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2022399902344 3 388.868027 1163.58225 0.60362 0.00023473 0.40207 0.00015635 1.0057 0.00039108 388.8681548577834 24.535 0.45849 21.687 21.48 21.939 -2.8478 81 25 4 0 0 0 0.044296 2 13288 13288;13405 37.771 9.5377 1 87906000 65092 5082 43358 44332 75952;75953 75952 0.007005029181982536 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7987670898438 2 582.798403 1163.58225 0.2326 0.00013556 0.4124 0.00024035 0.645 0.0003759 582.7985329434002 24.59 0.36283 21.707 21.49 21.852 -2.8831 53 19 4 0 0 0 0.012228 2 13415 13308;13415 74.2 12.598 1 17293000 65093 5082 43358 44332 75954;75955 75955 0.007005029181982536 TPEEKIREY 9 Unmodified _TPEEKIREY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD;nc|ENSG00000138668|Q14103-4|HNRNPD;nc|ENSG00000138668|Q14103-3|HNRNPD;ENST00000514325.1_1_4:83279715-83279970:-|nuORF nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 388.868027 1163.58225 -0.19046 -7.4065E-05 -2.4075 -0.00093618 -2.5979 -0.0010102 388.8678752963931 21.755 0.1906 21.778 21.728 21.918 0.022896 -0.014911 -0.0030943 NaN 37.771 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 718750 65094 5082 43358 44332 0.007005029181982536 TPEEKLAAL 9 Unmodified _TPEEKLAAL_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA;ENST00000538014.2_1_Y:21751423-21751552:+|nuORF;nc|ENSG00000291033|Q9BZA5|TXLNGY;ENSG00000086712|ENST00000380122|TXLNG ENSG00000084652|ENST00000373610|TXLNA;ENSG00000086712|ENST00000380122|TXLNG ENSG00000084652|ENST00000373610|TXLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2757873535156 2 486.274032 970.533512 -0.34492 -0.00016772 1.8312 0.00089046 1.4863 0.00072274 486.2746990751026 41.308 0.24763 41.308 41.174 41.422 0 26 11 3 0 0 0 0.024189 1 22236 22236 59.368 21.394 1 9075800 65095 1391;1443 43359 44333 75956 75956 0.0470663434908829 TPEEKLAAL 9 Unmodified _TPEEKLAAL_ 0 0 0 ENSG00000084652|ENST00000373610|TXLNA;ENST00000538014.2_1_Y:21751423-21751552:+|nuORF;nc|ENSG00000291033|Q9BZA5|TXLNGY;ENSG00000086712|ENST00000380122|TXLNG ENSG00000084652|ENST00000373610|TXLNA;ENSG00000086712|ENST00000380122|TXLNG ENSG00000084652|ENST00000373610|TXLNA MSMS AL20221201_MKP_PDAC_01 4 486.2740478515625 2 486.274032 970.533512 NaN NaN NaN NaN NaN NaN NaN 46.417 1 41.337 40.837 41.837 -5.0805 0 0 0 0.050854 1 28663 28663 57.249 13.391 1 65096 1391;1443 43359 44333 75957 75957 0.0470663434908829 TPEEKRARRL 10 Unmodified _TPEEKRARRL_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2460021972656 3 419.245832 1254.71567 0.0069578 2.917E-06 0.25939 0.00010875 0.26635 0.00011167 419.24602323192715 18.303 0.099529 18.309 18.255 18.355 0.0060463 8 5 2 0 0 0 0.71042 1 9285 9285 1.7423 0.28716 1 1464400 65097 2301 43360 44334 75958 75958 0.09849786814561412 TPEELAALF 9 Unmodified _TPEELAALF_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;nc|ENSG00000239306|Q96PK6-3|RBM14;nc|ENSG00000239306|Q96PK6-4|RBM14;ENST00000511114.1_1_11:66384104-66406046:+|nuORF;nc|ENSG00000239306|Q96PK6-2|RBM14;ENST00000512283.1_1_11:66384104-66384788:+|nuORF;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7607116699219 2 495.760758 989.506963 0.20974 0.00010398 0.095289 4.7241E-05 0.30503 0.00015122 495.7609803120239 86.828 0.32109 86.828 86.654 86.975 0 44 18 3 0 0 0 0.55144 1 48153 48153 4.3292 1.7518 1 1138600 65098 16567;10662 43361 44335 75959 75959 0.011789454577751712 TPEELAALF 9 Unmodified _TPEELAALF_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;nc|ENSG00000239306|Q96PK6-3|RBM14;nc|ENSG00000239306|Q96PK6-4|RBM14;ENST00000511114.1_1_11:66384104-66406046:+|nuORF;nc|ENSG00000239306|Q96PK6-2|RBM14;ENST00000512283.1_1_11:66384104-66384788:+|nuORF;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7620544433594 2 495.760758 989.506963 0.55003 0.00027268 0.43696 0.00021663 0.98698 0.00048931 495.7608479664482 87.34 0.33727 86.836 86.655 86.992 -0.50423 34 13 4 0 0 0 0.06187 1 47750 47750 42.095 11.87 1 1354600 65099 16567;10662 43361 44335 75960 75960 0.011789454577751712 TPEELAALF 9 Unmodified _TPEELAALF_ 0 0 0 nc|ENSG00000239306|Q96PK6-5|RBM14;nc|ENSG00000239306|Q96PK6-3|RBM14;nc|ENSG00000239306|Q96PK6-4|RBM14;ENST00000511114.1_1_11:66384104-66406046:+|nuORF;nc|ENSG00000239306|Q96PK6-2|RBM14;ENST00000512283.1_1_11:66384104-66384788:+|nuORF;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14;ENSG00000239306|ENST00000310137|RBM14 nc|ENSG00000239306|Q96PK6-5|RBM14 MSMS AL20221201_MKP_PDAC_01 4 495.7614135742188 2 495.760758 989.506963 NaN NaN NaN NaN NaN NaN NaN 95.446 1 89.27 88.77 89.77 -6.1757 0 0 0 0.12337 1 63220 63220 39.957 9.7325 1 65100 16567;10662 43361 44335 75961 75961 0.011789454577751712 TPEEPKDEEL 10 Unmodified _TPEEPKDEEL_ 0 0 0 REV__ENSG00000169710|ENST00000306749|FASN REV__ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7775268554688 2 593.777333 1185.54011 0.03224 1.9144E-05 0.16548 9.8257E-05 0.19772 0.0001174 593.7777682552666 47.06 0.23016 47.06 46.941 47.171 0 34 10 4 0 0 0 0.16361 1 25734 25734 38.176 0 1 12982000 + 65101 22418 43362 44336 75962 75962 -0.045235172808588686 TPEETLFTY 9 Unmodified _TPEETLFTY_ 0 0 0 ENSG00000140511|ENST00000359595|HAPLN3;ENST00000563808.1_1_15:89424564-89438702:-|nuORF ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7614135742188 2 550.760955 1099.50736 0.49313 0.0002716 0.94533 0.00052065 1.4385 0.00079225 550.7611362119213 66.245 0.25673 66.245 66.091 66.348 0 28 11 3 0 0 0 0.042911 1 36935 36935 48.346 31.404 1 2404000 65102 5245 43363 44337 75963 75963 -0.03841679613015003 TPEEVRLPL 9 Unmodified _TPEEVRLPL_ 0 0 0 nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;nc|ENSG00000076108|Q9UIF9-2|BAZ2A;ENST00000549327.1_1_12:57005355-57005599:-|nuORF nc|ENSG00000076108|Q9UIF9-3|BAZ2A nc|ENSG00000076108|Q9UIF9-3|BAZ2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2472534179688 2 527.300581 1052.58661 NaN NaN NaN NaN NaN NaN NaN 58.913 1 58.913 58.413 59.413 0 0 0 0 0.53226 1 32810 32810 14.838 4.7643 1 65103 1180 43364 44338 75964 75964 0.06242012131770025 TPEEYEGPLPG 11 Unmodified _TPEEYEGPLPG_ 0 0 0 REV__ENST00000596094.5_1_19:56884582-56885033:+|nuORF REV__ENST00000596094.5_1_19:56884582-56885033:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8521728515625 3 396.852154 1187.53463 -0.61969 -0.00024592 0.95979 0.0003809 0.3401 0.00013497 396.85236254861195 17.28 0.21908 17.28 17.088 17.307 0 70 50 2 0 0 0 0.73115 1 8392 8392 0.45452 0 1 631590 + 65104 29217 43365 44339 75965 75965 -0.05163196072658138 TPEFIHAAMR 10 Unmodified _TPEFIHAAMR_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ENSG00000109381|ENST00000686138|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.7962036132812 2 586.797683 1171.58081 0.13286 7.7964E-05 -4.2568 -0.0024979 -4.1239 -0.0024199 586.7952409151939 54.1 0.11893 54.033 53.962 54.081 -0.06694 8 5 2 0 0 0 0.54684 1 29369 29369 13.906 2.2658 1 1545100 65105 2645 43366 44340 75966 75966 0.0018859034844354028 TPEFQRFHFTL 11 Unmodified _TPEFQRFHFTL_ 0 0 0 nc|ENSG00000140993|Q6NT04-2|TIGD7;ENSG00000140993|ENST00000396862|TIGD7 nc|ENSG00000140993|Q6NT04-2|TIGD7 nc|ENSG00000140993|Q6NT04-2|TIGD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.910400390625 3 474.910338 1421.70918 NaN NaN NaN NaN NaN NaN NaN 74.4 1 74.4 73.9 74.9 0 0 0 0 0.94307 1 41400 41400 0.08335 0 1 65106 5294 43367 44341 75967 75967 0.01519848863176776 TPEFVQGKEF 10 Unmodified _TPEFVQGKEF_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.29541015625 2 591.295496 1180.57644 0.8473 0.00050101 0.55804 0.00032997 1.4053 0.00083097 591.2957082716074 51.121 0.19179 45.472 45.38 45.572 -5.649 14 11 2 0 0 0 0.27276 1 32159 32159 29.082 3.6823 1 22720000 65107 7916 43368 44342 75968 75968 -0.006625955934623562 TPEFYQTHFQ 10 Unmodified _TPEFYQTHFQ_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000481483.1_1_7:142988711-142991459:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2946166992188 2 649.296027 1296.5775 0.18641 0.00012104 -1.2197 -0.00079195 -1.0333 -0.00067091 649.2946790813949 70.564 0.22342 70.087 70.025 70.248 -0.47735 47 21 3 0 0 0 0.1942 1 38599 38599 34.402 0 1 4359300 65108 2403 43369 44343 75969 75969 -0.05892381224566634 TPEFYQTHFQ 10 Unmodified _TPEFYQTHFQ_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000481483.1_1_7:142988711-142991459:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.295166015625 2 649.296027 1296.5775 0.29526 0.00019171 -0.22866 -0.00014847 0.066601 4.3244E-05 649.295104139907 70.823 0.25786 70.346 70.225 70.483 -0.47735 28 11 3 0 0 0 0.29752 2 38708 38708;38816 27.629 8.2669 1 4557700 65109 2403 43369 44343 75970;75971 75970 -0.05892381224566634 TPEFYQTHFQ 10 Unmodified _TPEFYQTHFQ_ 0 0 0 ENSG00000106144|ENST00000310447|CASP2;nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000481483.1_1_7:142988711-142991459:+|nuORF ENSG00000106144|ENST00000310447|CASP2 ENSG00000106144|ENST00000310447|CASP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2984008789062 2 649.296027 1296.5775 NaN NaN NaN NaN NaN NaN NaN 70 1 69.521 69.021 70.021 -0.47903 0 0 0 0.3465 1 38273 38273 34.402 9.4108 1 65110 2403 43369 44343 75972 75972 -0.05892381224566634 TPEGNPPTL 9 Unmodified _TPEGNPPTL_ 0 0 0 nc|ENSG00000177963|Q9NPQ8-4|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2353515625 2 463.234907 924.455261 0.7177 0.00033246 -0.29982 -0.00013889 0.41788 0.00019358 463.2348949580255 37.127 0.37964 37.127 36.936 37.316 0 29 18 2 0 0 0 0.015445 1 19702 19702 68.081 13.307 1 2542000 65111 16410 43370 44344 75973 75973 -0.009987982361280956 TPEGNPPTL 9 Unmodified _TPEGNPPTL_ 0 0 0 nc|ENSG00000177963|Q9NPQ8-4|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2352905273438 2 463.234907 924.455261 0.67683 0.00031353 -1.4068 -0.00065167 -0.72995 -0.00033814 463.2343121674861 43.181 0.26818 38.416 38.225 38.493 -4.7648 22 17 2 0 0 0 0.0082661 1 26127 26127 92.491 14.342 1 13417000 65112 16410 43370 44344 75974 75974 -0.009987982361280956 TPEGPGNMEQ 10 Unmodified _TPEGPGNMEQ_ 0 0 0 ENSG00000177459|ENST00000318528|ERICH5 ENSG00000177459|ENST00000318528|ERICH5 ENSG00000177459|ENST00000318528|ERICH5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.7503662109375 2 530.224214 1058.43387 1.378 0.00073062 1.2217 0.00064778 2.5997 0.0013784 530.2247937095143 35.906 0.27008 31.713 31.613 31.883 -4.1928 20 16 2 0 0 0 0.22941 1 20981 20981 9.3831 2.66 1 3389500 65113 8684 43371 44345 75975 75975 -0.0930055132716916 TPEGQRAVQAL 11 Unmodified _TPEGQRAVQAL_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.3177490234375 2 585.317294 1168.62004 -0.74313 -0.00043497 0.98383 0.00057586 0.2407 0.00014089 585.317741502236 30.232 0.20408 30.232 30.139 30.343 0 21 9 3 0 0 0 0.00076978 1 15690 15690 85.764 51.363 1 5106100 65114 2677 43372 44346 75976 75976 0.04247013903682273 TPEGQRAVQAL 11 Unmodified _TPEGQRAVQAL_ 0 0 0 nc|ENSG00000109814|O60701-3|UGDH;ENSG00000109814|ENST00000316423|UGDH;nc|ENSG00000109814|O60701-2|UGDH nc|ENSG00000109814|O60701-3|UGDH nc|ENSG00000109814|O60701-3|UGDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3180541992188 2 585.317294 1168.62004 1.1136 0.00065179 -0.1793 -0.00010495 0.93427 0.00054684 585.3167767317798 34.119 0.35611 30.134 29.984 30.34 -3.9853 41 19 3 0 0 0 4.9562E-22 1 19614 19614 154.75 112.91 1 14990000 65115 2677 43372 44346 75977 75977 0.04247013903682273 TPEGYKVMY 9 Oxidation (M) _TPEGYKVM(Oxidation (M))Y_ TPEGYKVM(1)Y TPEGYKVM(59)Y 0 0 1 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000484981.1_1_3:58151207-58156486:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.25830078125 2 552.257525 1102.5005 -0.52714 -0.00029112 0.4275 0.00023609 -0.099638 -5.5026E-05 552.2575814689587 32.129 0.2804 32.129 31.961 32.242 0 32 13 3 0 0 0 0.024882 1 16724 16724 58.679 20.705 1 3126500 65116 16209 43373 44347 75978 75978 1809 -0.046653157652599475 TPEGYKVMY 9 Unmodified _TPEGYKVMY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000484981.1_1_3:58151207-58156486:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.7908325195312 2 544.260068 1086.50558 0.58642 0.00031917 -0.54085 -0.00029436 0.04557 2.4802E-05 544.7609237951866 43.151 0.25116 38.387 38.197 38.448 -4.7648 27 16 2 0 0 0 0.021978 1 26106 26106 63.961 37.077 1 8201600 65117 16209 43373 44348 75979 75979 -0.03421011902628379 TPEIMAPIL 9 Unmodified _TPEIMAPIL_ 0 0 0 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 MSMS AL20221201_MKP_PDAC_01 4 492.7750549316406 2 492.775354 983.536154 NaN NaN NaN NaN NaN NaN NaN 96.462 1 90.286 89.786 90.786 -6.1757 0 0 0 0.023279 1 63925 63925 74.423 30.016 1 65118 4241 43374 44349 75980 75980 0.043727664824018575 TPEKFSVL 8 Unmodified _TPEKFSVL_ 0 0 0 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5097045898438 1 920.50876 919.501483 0.19099 0.00017581 1.7079 0.0015721 1.8989 0.0017479 920.5102070394988 93.339 0.29559 92.882 92.728 93.023 -0.4574 21 12 2 0 0 0 0.80992 1 51081 51081 0.69038 0 1 421880 65119 2851 43375 44350 75981 75981 0.03851266665969888 TPEKVFVVM 9 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ TPEKVFVVM(1) TPEKVFVVM(57) 0 0 1 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2855834960938 2 533.286085 1064.55762 0.44488 0.00023725 -0.67354 -0.00035919 -0.22866 -0.00012194 533.2858682405181 42.296 0.42846 42.296 41.992 42.42 0 31 21 3 0 0 0 0.026499 1 22894 22894 57.249 30.981 1 3462900 65120 2299 43376 44351 75982 75982 393 0.02792151511107477 TPEKVFVVM 9 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ TPEKVFVVM(1) TPEKVFVVM(83) 0 0 1 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.28515625 2 533.286085 1064.55762 -0.034518 -1.8408E-05 -0.35166 -0.00018754 -0.38618 -0.00020595 533.28588966812 42.398 0.12005 42.091 42.023 42.143 -0.30682 7 5 2 0 0 0 0.0093064 1 22531 22531 83.429 35.68 1 8889500 65121 2299 43376 44351 75983 75983 393 0.02792151511107477 TPEKVFVVM 9 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ TPEKVFVVM(1) TPEKVFVVM(40) 0 0 1 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2861328125 2 533.286085 1064.55762 0.033115 1.766E-05 0.31823 0.00016971 0.35135 0.00018737 533.2864719030418 42.534 0.18108 42.227 42.179 42.36 -0.30682 19 8 3 0 0 0 0.069655 1 22665 22665 40.239 17.503 1 13091000 65122 2299 43376 44351 75984 75984 393 0.02792151511107477 TPEKVFVVM 9 Oxidation (M) _TPEKVFVVM(Oxidation (M))_ TPEKVFVVM(1) TPEKVFVVM(57) 0 0 1 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MSMS AL20221201_MKP_PDAC_01 4 533.2871704101562 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 47.513 1 42.279 41.779 42.779 -5.2339 0 0 0 0.050854 1 29496 29496 57.249 31.85 1 65123 2299 43376 44351 75985 75985 393 0.02792151511107477 TPEKVFVVM 9 Unmodified _TPEKVFVVM_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2890014648438 2 525.288628 1048.5627 0.27011 0.00014188 -1.3216 -0.00069424 -1.0515 -0.00055236 525.2880558288069 57.848 0.24548 57.358 57.247 57.492 -0.48974 18 11 2 0 0 0 0.05483 1 31440 31440 43.772 24.515 1 3500800 65124 2299 43376 44352 75986 75986 0.04036455373739045 TPEKVFVVM 9 Unmodified _TPEKVFVVM_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2890625 2 525.288628 1048.5627 0.94442 0.00049609 -2.1744 -0.0011422 -1.23 -0.00064608 525.2870470093372 63.434 0.43096 57.259 57.019 57.45 -6.1757 55 24 4 0 0 0 0.05483 1 40958 40958 43.772 17.504 1 21534000 65125 2299 43376 44352 75987 75987 0.04036455373739045 TPELGRVAY 9 Unmodified _TPELGRVAY_ 0 0 0 ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B ENSG00000259956|ENST00000563281|RBM15B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2717895507812 2 503.271824 1004.5291 0.38232 0.00019241 0.093343 4.6977E-05 0.47566 0.00023939 503.2718082339604 40.096 0.22179 40.096 39.993 40.214 0 21 10 3 0 0 0 0.040683 1 21538 21538 49.554 21.067 1 5105900 65126 10825 43377 44353 75988 75988 0.02701169926183411 TPELYSSHLIN 11 Unmodified _TPELYSSHLIN_ 0 0 0 REV__nc|ENSG00000163946|Q9UK61-3|TASOR REV__nc|ENSG00000163946|Q9UK61-3|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3267822265625 2 637.324785 1272.63502 0.201 0.0001281 0.82623 0.00052658 1.0272 0.00065468 637.3253974932276 50.622 0.22758 50.622 50.477 50.704 0 21 10 3 0 0 0 0.46197 1 27893 27893 28.495 10.348 1 4666100 + 65127 21840 43378 44354 75989 75989 0.009604609810367037 TPELYSSHLIN 11 Unmodified _TPELYSSHLIN_ 0 0 0 REV__nc|ENSG00000163946|Q9UK61-3|TASOR REV__nc|ENSG00000163946|Q9UK61-3|TASOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3250122070312 2 637.324785 1272.63502 0.77083 0.00049127 -0.59528 -0.00037939 0.17554 0.00011188 637.3245199730163 57.253 0.3451 51.226 51.065 51.41 -6.0275 26 18 2 0 0 0 0.14513 1 36572 36572 53.404 16.898 1 24458000 + 65128 21840 43378 44354 75990 75990 0.009604609810367037 TPEMTWFHN 9 Unmodified _TPEMTWFHN_ 0 0 0 nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-6|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 581.830078125 2 581.752941 1161.49133 1.4462 0.00084135 1.3158 0.00076546 2.762 0.0016068 581.7533301113356 97.528 0.26547 91.352 91.137 91.403 -6.1757 17 14 2 0 0 0 0.19613 1 64614 64614 12.532 4.6214 1 9405200 65129 16288 43379 44355 75991 75991 -0.08295664330944419 TPEQQAAIL 9 Unmodified _TPEQQAAIL_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7641906738281 2 485.763832 969.513111 0.032524 1.5799E-05 0.28019 0.0001361 0.31271 0.0001519 485.7638225315004 45.35 0.39536 45.35 45.132 45.527 0 51 21 3 0 0 0 0.0086722 2 24632 24632;24739 88.954 34.18 1 99638000 65130 10466;15309;15322 43380 44356 75992;75993 75992 0.027134636892810704 TPEQQAAIL 9 Unmodified _TPEQQAAIL_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 970.5203857421875 1 970.520387 969.513111 -0.066068 -6.412E-05 0.36897 0.00035809 0.3029 0.00029397 970.520450504186 45.364 0.22009 45.364 45.209 45.429 0 17 11 2 0 0 0 0.001066 1 24684 24684 139.14 64.209 1 9096700 65131 10466;15309;15322 43380 44356 75994 75994 0.027134636892810704 TPEQQAAIL 9 Unmodified _TPEQQAAIL_ 0 0 0 ENSG00000213928|ENST00000396864|IRF9;ENST00000557894.5_1_14:24634074-24635402:+|nuORF;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9;ENST00000560311.1_1_14:24634973-24635402:+|nuORF;ENST00000561415.1_1_14:24633725-24635402:+|nuORF ENSG00000213928|ENST00000396864|IRF9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 970.5176391601562 1 970.520387 969.513111 0.25012 0.00024275 -2.6723 -0.0025935 -2.4221 -0.0023507 970.5177489241572 52.06 0.32352 46.325 46.207 46.53 -5.7345 27 21 2 0 0 0 0.001066 1 32812 32812 139.14 88.283 1 40728000 65132 10466;15309;15322 43380 44356 75995 75995 0.027134636892810704 TPEQVKKVY 9 Unmodified _TPEQVKKVY_ 0 0 0 nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8760681152344 3 364.541363 1090.60226 -0.48483 -0.00017674 0.8356 0.00030461 0.35077 0.00012787 364.54161953165635 19.168 0.12386 19.168 19.094 19.217 0 11 7 2 0 0 0 0.55373 1 9576 9576 4.1895 1.4543 1 1017100 65133 3238 43381 44357 75996 75996 0.06058298648804339 TPEQVKKVY 9 Unmodified _TPEQVKKVY_ 0 0 0 nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 nc|ENSG00000116675|O75061-4|DNAJC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.54150390625 3 364.541363 1090.60226 1.8408 0.00067103 -1.0713 -0.00039054 0.76943 0.00028049 364.54087293684006 21.096 0.20583 18.403 18.321 18.526 -2.693 23 11 3 0 0 0 0.27545 1 11273 11273 18.373 6.8552 1 2822000 65134 3238 43381 44357 75997 75997 0.06058298648804339 TPEQVVQQY 9 Unmodified _TPEQVVQQY_ 0 0 0 ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2417602539062 2 546.272021 1090.52949 0.16755 9.153E-05 -0.76931 -0.00042025 -0.60176 -0.00032872 546.2715530423988 40.098 0.30293 40.098 39.973 40.276 0 36 14 4 0 0 0 0.18482 1 21470 21470 8.7454 0 1 26086000 65135 1556 43382 44358 75998 75998 -0.012154551446201367 TPERKFHSFGY 11 Unmodified _TPERKFHSFGY_ 0 0 0 ENSG00000165868|ENST00000369209|HSPA12A;ENST00000481291.1_1_10:118458052-118460585:-|nuORF ENSG00000165868|ENST00000369209|HSPA12A ENSG00000165868|ENST00000369209|HSPA12A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.3145751953125 2 684.838394 1367.66223 0.12569 8.6079E-05 1.3728 0.00094012 1.4985 0.0010262 684.8379519489998 50.129 0.20424 50.129 50.032 50.236 0 15 9 2 0 0 0 0.30049 1 27667 27667 6.2058 0 1 2783700 65136 7398 43383 44359 75999 75999 -0.006890106879609448 TPERSFIF 8 Unmodified _TPERSFIF_ 0 0 0 nc|ENSG00000064933|P54277-4|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1 nc|ENSG00000064933|P54277-4|PMS1 nc|ENSG00000064933|P54277-4|PMS1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 498.2380676269531 2 498.761092 995.507631 1.2248 0.00061086 -0.18757 -9.3552E-05 1.0372 0.00051731 498.7611086725535 60.696 0.4179 54.548 54.308 54.726 -6.1478 33 21 2 0 0 0 8.7369 1 39099 39099 20.871 8.3397 1 28712000 65137 888 43384 44360 76000 76000 0.009697848974724366 TPESEGNPLLE 11 Unmodified _TPESEGNPLLE_ 0 0 0 ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2 ENSG00000140044|ENST00000651602|JDP2 ENSG00000140044|ENST00000651602|JDP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.2843627929688 2 593.285325 1184.5561 NaN NaN NaN NaN NaN NaN NaN 38.658 1 38.371 37.871 38.871 -0.28687 0 0 0 0.69464 1 20359 20359 17.113 1.2657 1 65138 5206 43385 44361 76001 76001 -0.028798110439083757 TPEWYKQWRWT 11 Unmodified _TPEWYKQWRWT_ 0 0 0 REV__ENST00000396623.7_1_8:67369110-67372638:+|nuORF REV__ENST00000396623.7_1_8:67369110-67372638:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.267822265625 3 527.593009 1579.7572 0.016264 8.5808E-06 -3.8485 -0.0020304 -3.8322 -0.0020218 527.5912630531215 48.374 0.19891 48.374 48.272 48.47 0 12 9 2 0 0 0 0.30558 1 26534 26534 0.064406 0 1 2113000 + 65139 26511 43386 44362 76002 76002 -0.009490772167964678 TPEYIANIIE 10 Unmodified _TPEYIANIIE_ 0 0 0 REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF REV__ENST00000549988.5_1_12:76453547-76478450:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3305053710938 2 581.803154 1161.59175 0.62115 0.00036139 -2.7864 -0.0016211 -2.1652 -0.0012597 582.3021776708487 77.377 0.11347 77.427 77.372 77.486 0.05011 6 4 2 0 0 0 0.22149 1 42734 42734 20.454 9.6297 1 1437100 + 65140 23621 43387 44363 76003 76003 0.017422712037159727 TPFAFVIDL 9 Unmodified _TPFAFVIDL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.781005859375 2 511.781493 1021.54843 0.58881 0.00030134 0.12313 6.3014E-05 0.71193 0.00036435 511.7816421518864 101.65 0.15222 95.472 95.351 95.503 -6.1757 14 7 3 0 0 0 0.0082281 1 68219 68219 92.822 35.351 1 32942000 65141 3829;16172 43388 44364 76004 76004 0.03852126217100249 TPFDFKSAS 9 Unmodified _TPFDFKSAS_ 0 0 0 nc|ENSG00000112339|Q9Y450-2|HBS1L nc|ENSG00000112339|Q9Y450-2|HBS1L nc|ENSG00000112339|Q9Y450-2|HBS1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2445678710938 2 500.242732 998.470912 NaN NaN NaN NaN NaN NaN NaN 78.205 1 78.205 77.705 78.705 0 0 0 0 0.81961 1 43465 43465 5.2969 0.066215 1 65142 16126 43389 44365 76005 76005 -0.028385117190850906 TPFDLGYSGT 10 Unmodified _TPFDLGYSGT_ 0 0 0 REV__ENST00000366185.2_2_X:53171080-53171218:+|nuORF REV__ENST00000366185.2_2_X:53171080-53171218:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.246337890625 2 529.245472 1056.47639 0.53129 0.00028118 -0.53089 -0.00028097 0.00040134 2.1241E-07 529.2454671565713 82.473 0.23643 81.977 81.843 82.079 -0.49521 20 9 3 0 0 0 0.66569 1 45147 45147 6.7232 0.51738 1 773880 + 65143 25952 43390 44366 76006 76006 -0.049588329272637566 TPFELIEAL 9 Unmodified _TPFELIEAL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7849731445312 2 516.784233 1031.55391 0.26871 0.00013887 -0.25156 -0.00013 0.017154 8.8649E-06 516.7841009940202 99.297 0.17252 99.139 99.036 99.208 -0.1575 10 5 2 0 0 0 0.070838 1 54225 54225 39.957 16.809 1 1889400 65144 4745 43391 44367 76007 76007 0.039398050088948366 TPFELIEAL 9 Unmodified _TPFELIEAL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.784233 1031.55391 0.293 0.00015142 -0.29022 -0.00014998 0.0027788 1.436E-06 516.7838814315282 99.145 0.12918 99.145 99.076 99.205 0 0.0027955 -2.2499E-05 NaN 39.957 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 496310 65145 4745 43391 44367 0.039398050088948366 TPFELIEALL 10 Unmodified _TPFELIEALL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8883361816406 3 382.553269 1144.63798 0.59946 0.00022933 1.1261 0.00043078 1.7255 0.00066011 382.5538170220473 15.467 0.31419 12.94 12.799 13.113 -2.5273 113 73 3 0 0 0 0.54684 1 7971 7971 8.4443 0 1 5001800 65146 4745 43392 44368 76008 76008 0.0714433610580727 TPFGGRLLVL 10 Unmodified _TPFGGRLLVL_ 0 0 0 nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1 nc|ENSG00000059122|Q4VC44-2|FLYWCH1 nc|ENSG00000059122|Q4VC44-2|FLYWCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.8287963867188 2 536.829309 1071.64407 1.3665 0.00073357 0.42558 0.00022847 1.7921 0.00096204 536.8290055471382 97.4 0.41122 91.224 91.01 91.421 -6.1757 54 22 3 0 0 0 0.093652 2 64514 64514;64633 47.594 18.513 1 38453000 65147 811 43393 44369 76009;76010 76009 0.11110899127993434 TPFHEIMSL 9 Oxidation (M) _TPFHEIM(Oxidation (M))SL_ TPFHEIM(1)SL TPFHEIM(64)SL 0 0 1 ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B ENSG00000156970|ENST00000287598|BUB1B ENSG00000156970|ENST00000287598|BUB1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7659912109375 2 545.765517 1089.51648 0.077999 4.2569E-05 0.1376 7.5098E-05 0.2156 0.00011767 545.7657502404718 51.9 0.2263 51.466 51.364 51.59 -0.43367 18 11 2 0 0 0 0.019303 1 28029 28029 64.236 35.749 1 2520700 65148 6491 43394 44370 76011 76011 1138 -0.02469609528361616 TPFKGGTLF 9 Unmodified _TPFKGGTLF_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2998657226562 2 484.26601 966.517468 -0.57505 -0.00027848 0.50971 0.00024684 -0.06534 -3.1642E-05 484.266278208193 56.17 0.23654 55.685 55.531 55.767 -0.48554 27 11 3 0 0 0 0.1318 1 30490 30490 34.932 14.478 1 10200000 65149 16159 43395 44371 76012 76012 0.032869729028675465 TPFKGGTLF 9 Unmodified _TPFKGGTLF_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2669067382812 2 484.26601 966.517468 -0.15902 -7.7006E-05 0.21184 0.00010259 0.05282 2.5579E-05 484.2660879044254 55.745 0.42696 55.676 55.497 55.924 -0.068737 68 22 4 0 0 0 0.0089732 2 30249 30249;30356 86.332 37.605 1 176950000 65150 16159 43395 44371 76013;76014 76013 0.032869729028675465 TPFKLGPSV 9 Unmodified _TPFKLGPSV_ 0 0 0 REV__ENSG00000175213|ENST00000311764|ZNF408 REV__ENSG00000175213|ENST00000311764|ZNF408 MSMS AL20221201_MKP_PDAC_01 4 473.6263122558594 2 473.273835 944.533118 NaN NaN NaN NaN NaN NaN NaN 105 1 98.828 98.328 99.328 -6.1757 0 0 0 0.81961 1 70302 70302 5.2969 0.066215 1 + 65151 22851 43396 44372 76015 76015 0.05863259419891165 TPFKREKSF 9 Unmodified _TPFKREKSF_ 0 0 0 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000532826.5_1_1:236689310-236702461:+|nuORF;ENST00000366583.6_1_1:236689310-236706138:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5452270507812 3 380.545108 1138.61349 0.063362 2.4112E-05 1.0188 0.0003877 1.0822 0.00041181 380.5454674955028 18.296 0.099529 18.302 18.255 18.355 0.0060463 8 5 2 0 0 0 0.46162 1 9268 9268 9.544 4.647 1 857190 65152 3270 43397 44373 76016 76016 0.04973120742943138 TPFKVVSPLT 10 Unmodified _TPFKVVSPLT_ 0 0 0 ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2796630859375 2 544.82115 1087.62775 0.36398 0.0001983 -0.50119 -0.00027306 -0.13721 -7.4756E-05 544.8209021245449 72.196 0.60544 71.72 71.415 72.02 -0.47609 63 26 4 0 0 0 0.52888 1 39481 39481 14.838 0.93222 1 4684300 65153 8963 43398 44374 76017 76017 0.08743773171227076 TPFKWFMEM 9 Unmodified _TPFKWFMEM_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2-4|PI4KAP2;ENST00000492581.5_1_22:21064985-21065135:-|nuORF;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2 ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7801513671875 2 608.780113 1215.54567 0.8174 0.00049762 -1.1967 -0.00072855 -0.37935 -0.00023094 608.7796186547768 99.481 0.080826 93.306 93.243 93.324 -6.1757 10 4 3 0 0 0 0.018061 1 66284 66284 65.474 42.737 1 28287000 65154 10689;12171 43399 44375 76018 76018 -0.05347788503740958 TPFLGQHGF 9 Unmodified _TPFLGQHGF_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2525024414062 2 502.253434 1002.49232 0.062505 3.1393E-05 0.88689 0.00044544 0.94939 0.00047683 502.2536198571541 53.366 0.30305 52.915 52.762 53.065 -0.45173 35 14 3 0 0 0 0.013323 1 28844 28844 71.134 39.017 1 6048200 65155 10096 43400 44376 76019 76019 -0.008830818997125789 TPFLGQHGF 9 Unmodified _TPFLGQHGF_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.2538146972656 2 502.253434 1002.49232 0.30646 0.00015392 0.44598 0.00022399 0.75243 0.00037791 502.25350171926334 53.053 0.41507 52.99 52.804 53.219 -0.063423 42 20 3 0 0 0 0.0083938 1 28717 28717 108 83.323 1 6262000 65156 10096 43400 44376 76020 76020 -0.008830818997125789 TPFLGQHGF 9 Unmodified _TPFLGQHGF_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2527770996094 2 502.253434 1002.49232 1.5435 0.00077523 1.3618 0.00068399 2.9053 0.0014592 502.25379186130175 58.917 0.42596 52.843 52.547 52.973 -6.0745 49 23 3 0 0 0 0.012148 1 37698 37698 74.423 36.272 1 47397000 65157 10096 43400 44376 76021 76021 -0.008830818997125789 TPFLYDLVM 9 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ TPFLYDLVM(1) TPFLYDLVM(78) 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7786254882812 2 557.778093 1113.54163 0.66152 0.00036898 0.48092 0.00026825 1.1424 0.00063723 557.7784319877311 88.574 0.33324 88.07 87.847 88.18 -0.50423 50 14 4 0 0 0 0.010877 2 48472 48374;48472 77.984 53.31 1 6430400 65158 2015;6869 43401 44377 76022;76023 76023 346 -0.010595547257935323 TPFLYDLVM 9 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ TPFLYDLVM(1) TPFLYDLVM(78) 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.778564453125 2 557.778093 1113.54163 0.65833 0.0003672 0.32151 0.00017933 0.97984 0.00054654 557.778396737412 88.841 0.3855 88.336 88.18 88.565 -0.50423 55 16 4 0 0 0 0.010877 1 48572 48572 77.984 53.31 1 7034500 65159 2015;6869 43401 44377 76024 76024 346 -0.010595547257935323 TPFLYDLVM 9 Oxidation (M) _TPFLYDLVM(Oxidation (M))_ TPFLYDLVM(1) TPFLYDLVM(97) 0 0 1 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7789916992188 2 557.778093 1113.54163 0.71786 0.0004004 0.2872 0.00016019 1.0051 0.0005606 557.7785031788985 98.731 0.52677 92.555 92.148 92.675 -6.1757 49 38 2 0 0 0 0.0083087 2 65259 65259;65410 97.075 66.85 1 30099000 65160 2015;6869 43401 44377 76025;76026 76025 346 -0.010595547257935323 TPFLYDLVM 9 Unmodified _TPFLYDLVM_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000465780.1_1_1:33116898-33117663:+|nuORF;ENST00000525506.1_1_1:33116898-33123241:+|nuORF;ENST00000524393.5_1_1:33116898-33134621:+|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7816772460938 2 549.780636 1097.54672 1.1821 0.00064987 -2.4586 -0.0013517 -1.2765 -0.00070181 549.7788814520579 101.13 0.17722 94.953 94.869 95.046 -6.1757 20 10 3 0 0 0 0.016184 1 67778 67778 67.344 42.67 1 122070000 65161 2015;6869 43401 44378 76027 76027 0.001847491368152987 TPFNLQEEM 9 Oxidation (M) _TPFNLQEEM(Oxidation (M))_ TPFNLQEEM(1) TPFNLQEEM(52) 0 0 1 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7486572265625 2 562.750064 1123.48558 0.27369 0.00015402 -0.18238 -0.00010263 0.091315 5.1387E-05 562.7498805416342 47.034 0.30966 47.034 46.922 47.231 0 20 14 2 0 0 0 0.03568 1 25760 25760 52.268 35.155 1 3201900 65162 7848 43402 44379 76028 76028 1332 -0.07122807633254524 TPFPLPTEL 9 Unmodified _TPFPLPTEL_ 0 0 0 nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7787475585938 2 507.778951 1013.54335 0.1343 6.8195E-05 0.096939 4.9223E-05 0.23124 0.00011742 507.7788089518676 89.344 0.4846 88.842 88.591 89.076 -0.50171 45 20 3 0 0 0 0.14602 1 48884 48884 28.487 11.545 1 965970 65163 3660 43403 44380 76029 76029 0.037118223544553075 TPFPSDLGF 9 Unmodified _TPFPSDLGF_ 0 0 0 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.4713745117188 1 980.472374 979.465098 0.65013 0.00063744 1.6561 0.0016237 2.3062 0.0022612 980.4736392287685 81.341 0.50812 80.849 80.731 81.239 -0.49247 39 21 2 0 0 0 0.042911 1 44533 44533 48.346 21.462 1 643530 65164 1851 43404 44381 76030 76030 -0.025456102307543915 TPFPSDLGF 9 Unmodified _TPFPSDLGF_ 0 0 0 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7396240234375 2 490.739825 979.465098 0.90753 0.00044536 1.7547 0.0008611 2.6622 0.0013065 490.74059644128835 81.669 0.53363 81.174 80.728 81.262 -0.4952 34 22 2 0 0 0 0.49272 1 44536 44536 7.9102 2.1497 1 707840 65165 1851 43404 44381 76031 76031 -0.025456102307543915 TPFPSDLGF 9 Unmodified _TPFPSDLGF_ 0 0 0 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 ENSG00000100601|ENST00000216489|ALKBH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7405395507812 2 490.739825 979.465098 1.0038 0.00049258 0.62197 0.00030522 1.6257 0.00079781 490.7395675708703 88.6 0.39555 82.424 82.189 82.584 -6.1757 28 21 2 0 0 0 0.016184 1 58476 58476 67.344 25.249 1 9162600 65166 1851 43404 44381 76032 76032 -0.025456102307543915 TPFPYNPLIM 10 Unmodified _TPFPYNPLIM_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;ENST00000418829.5_1_12:124809950-124810795:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8077392578125 2 596.807185 1191.59982 0.88051 0.00052549 -1.3138 -0.0007841 -0.43332 -0.00025861 596.8055976035143 100.13 0.14561 93.959 93.884 94.03 -6.1757 13 8 2 0 0 0 0.11824 1 66895 66895 43.772 11.467 1 12764000 65167 9828 43405 44382 76033 76033 0.011681269194696142 TPFQQPSGY 9 Unmodified _TPFQQPSGY_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7406005859375 2 512.740357 1023.46616 -0.34985 -0.00017938 -0.060669 -3.1107E-05 -0.41052 -0.00021049 512.7402361666522 41.155 0.51972 41.155 40.961 41.48 0 32 15 3 0 0 0 0.011968 1 22120 22120 74.929 49.53 1 9349600 65168 5528 43406 44383 76034 76034 -0.04463395861853314 TPFQQPSGY 9 Unmodified _TPFQQPSGY_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7406616210938 2 512.740357 1023.46616 -0.30375 -0.00015574 -0.073563 -3.7719E-05 -0.37731 -0.00019346 512.7402243837573 41.525 0.24422 41.222 41.067 41.312 -0.30304 16 10 2 0 0 0 0.013323 1 22012 22012 71.134 47.113 1 4793100 65169 5528 43406 44383 76035 76035 -0.04463395861853314 TPFQQPSGY 9 Unmodified _TPFQQPSGY_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7413940429688 2 512.740357 1023.46616 1.3847 0.00070998 -0.0082652 -4.2379E-06 1.3764 0.00070574 512.740270396578 47.776 0.46779 42.542 42.26 42.728 -5.2339 55 27 3 0 0 0 0.0085366 2 29602 29602;29746 90.135 55.992 1 26988000 65170 5528 43406 44383 76036;76037 76036 -0.04463395861853314 TPFRNFEEF 9 Unmodified _TPFRNFEEF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7811279296875 2 593.780013 1185.54547 0.24412 0.00014495 -0.33824 -0.00020084 -0.094125 -5.589E-05 593.7798548624583 58.065 0.28844 58.065 57.891 58.179 0 25 11 3 0 0 0 0.047714 1 32310 32310 45.74 24.203 1 3385600 65171 887 43407 44384 76038 76038 -0.039877489077071004 TPFRNFEEF 9 Unmodified _TPFRNFEEF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.78125 2 593.780013 1185.54547 0.33547 0.0001992 -1.948 -0.0011567 -1.6125 -0.00095747 593.778666757096 58.59 0.57214 58.099 57.901 58.474 -0.49079 64 27 3 0 0 0 0.040733 2 31814 31814;31913 49.527 32.585 1 12344000 65172 887 43407 44384 76039;76040 76039 -0.039877489077071004 TPFRNFEEF 9 Unmodified _TPFRNFEEF_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.7800903320312 2 593.780013 1185.54547 1.1571 0.00068707 -0.44702 -0.00026543 0.71009 0.00042164 593.7802385354532 64.104 0.29058 57.928 57.782 58.072 -6.1757 28 14 3 0 0 0 0.0039711 1 41471 41471 121.53 75.834 1 20545000 65173 887 43407 44384 76041 76041 -0.039877489077071004 TPFSDSWYY 9 Unmodified _TPFSDSWYY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.2455444335938 2 583.245472 1164.47639 0.55585 0.0003242 -0.21316 -0.00012433 0.34269 0.00019987 583.2452306432765 72.558 0.35101 72.082 71.9 72.251 -0.47609 38 16 3 0 0 0 0.06187 2 39671 39671;39777 42.095 18.074 1 4117200 65174 4539 43408 44385 76042;76043 76042 -0.09926832927294527 TPFSQDSSY 9 Unmodified _TPFSQDSSY_ 0 0 0 nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B nc|ENSG00000139718|Q9UPS6-2|SETD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.219970703125 2 516.219454 1030.42436 0.71598 0.0003696 -1.1442 -0.00059068 -0.42827 -0.00022108 516.2195099557428 36.699 0.38952 36.699 36.547 36.936 0 45 18 4 0 0 0 0.013323 1 19464 19464 71.134 35.089 1 6154000 65175 5182 43409 44386 76044 76044 -0.08963996341026359 TPFSVGLVY 9 Unmodified _TPFSVGLVY_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7659912109375 2 491.765843 981.517133 1.1222 0.00055185 0.014049 6.909E-06 1.1362 0.00055875 491.76584158062616 80.072 0.37663 79.583 79.403 79.779 -0.48932 41 14 4 0 0 0 0.038285 2 43813 43813;43909 50.855 26.181 1 6736700 65176 4910 43410 44387 76045;76046 76045 0.025635531830062064 TPFSVGLVY 9 Unmodified _TPFSVGLVY_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 982.5258178710938 1 982.52441 981.517133 0.84522 0.00083045 1.216 0.0011948 2.0613 0.0020252 982.5253376931563 80.088 0.30567 79.599 79.428 79.734 -0.48932 20 11 2 0 0 0 0.026094 2 43825 43825;43921 57.471 13.064 1 1510100 65177 4910 43410 44387 76047;76048 76047 0.025635531830062064 TPFSVGLVY 9 Unmodified _TPFSVGLVY_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7643432617188 2 491.765843 981.517133 0.51643 0.00025396 -0.0962 -4.7308E-05 0.42023 0.00020665 491.7656607395332 79.484 0.40652 79.539 79.363 79.77 0.05497 45 15 4 0 0 0 0.023164 2 43881 43881;43980 60.39 35.716 1 14098000 65178 4910 43410 44387 76049;76050 76049 0.025635531830062064 TPFSVGLVY 9 Unmodified _TPFSVGLVY_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7666625976562 2 491.765843 981.517133 0.99366 0.00048865 0.56486 0.00027778 1.5585 0.00076643 491.7660278090424 87.495 0.55092 81.32 81.036 81.587 -6.1757 74 29 3 0 0 0 0.0090851 3 57703 57580;57703;57828 85.357 53.31 1 90390000 65179 4910 43410 44387 76051;76052;76053 76052 0.025635531830062064 TPFSVGLVY 9 Unmodified _TPFSVGLVY_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.5260620117188 1 982.52441 981.517133 0.98596 0.00096873 0.13255 0.00013024 1.1185 0.001099 982.5244756069637 87.482 0.45956 81.306 81.092 81.551 -6.1757 52 24 3 0 0 0 0.0082281 2 57738 57612;57738 104.8 68.755 1 29340000 65180 4910 43410 44387 76054;76055 76055 0.025635531830062064 TPFTARGRF 9 Unmodified _TPFTARGRF_ 0 0 0 nc|ENSG00000171791|P10415-2|BCL2;ENSG00000171791|ENST00000333681|BCL2 nc|ENSG00000171791|P10415-2|BCL2 nc|ENSG00000171791|P10415-2|BCL2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.7398681640625 2 526.785433 1051.55631 1.4007 0.00073785 -0.84626 -0.0004458 0.5544 0.00029205 526.7843570571365 34.032 0.34158 30.047 29.842 30.184 -3.9853 30 18 2 0 0 0 0.19496 1 19531 19531 9.3831 0 1 9992300 65181 8140 43411 44388 76056 76056 0.03259698257238597 TPFTGRPRAAL 11 Unmodified _TPFTGRPRAAL_ 0 0 0 ENST00000308020.5_1_11:450281-450398:+|nuORF ENST00000308020.5_1_11:450281-450398:+|nuORF ENST00000308020.5_1_11:450281-450398:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5623779296875 3 396.22789 1185.66184 -0.33851 -0.00013413 -0.28374 -0.00011243 -0.62225 -0.00024655 396.22769401721644 32.076 0.29148 32.105 31.925 32.216 0.029747 19 12 2 0 0 0 0.44612 1 16830 16830 19.144 10.168 1 3405000 65182 11647 43412 44389 76057 76057 0.07643614382845954 TPFTLKDIL 9 Unmodified _TPFTLKDIL_ 0 0 0 ENST00000437056.5_1_2:179318136-179318400:+|nuORF;ENSG00000204311|ENST00000644580|PJVK ENST00000437056.5_1_2:179318136-179318400:+|nuORF ENST00000437056.5_1_2:179318136-179318400:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.3062133789062 2 524.307875 1046.6012 0.34009 0.00017831 -0.18474 -9.6861E-05 0.15534 8.1448E-05 524.307647394062 90.401 0.33752 89.907 89.758 90.095 -0.49457 31 15 3 0 0 0 0.59218 1 49348 49348 1.8442 0 1 1721200 65183 10266 43413 44390 76058 76058 0.07976084279880524 TPFTPSLVFTY 11 Unmodified _TPFTPSLVFTY_ 0 0 0 ENST00000511041.1_1_4:129077185-129077356:+|nuORF;nc|ENSG00000175592|P15407-2|FOSL1;ENSG00000175592|ENST00000312562|FOSL1 ENST00000511041.1_1_4:129077185-129077356:+|nuORF ENST00000511041.1_1_4:129077185-129077356:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8310546875 2 636.829172 1271.64379 1.9826 0.0012626 0.82345 0.00052439 2.806 0.0017869 636.8295588984506 94.449 0.29568 94.463 94.323 94.618 0.014252 25 10 3 0 0 0 0.0075717 1 52479 52479 88.954 59.872 1 3985800 65184 8531 43414 44391 76059 76059 0.018834346174799066 TPFTPSLVFTY 11 Unmodified _TPFTPSLVFTY_ 0 0 0 ENST00000511041.1_1_4:129077185-129077356:+|nuORF;nc|ENSG00000175592|P15407-2|FOSL1;ENSG00000175592|ENST00000312562|FOSL1 ENST00000511041.1_1_4:129077185-129077356:+|nuORF ENST00000511041.1_1_4:129077185-129077356:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3302612304688 2 636.829172 1271.64379 0.76548 0.00048748 -0.96303 -0.00061329 -0.19755 -0.00012581 637.3298617221157 99.987 0.12993 93.812 93.74 93.87 -6.1757 21 8 3 0 0 0 0.0075717 1 66732 66732 88.954 56.648 1 54734000 65185 8531 43414 44391 76060 76060 0.018834346174799066 TPFTVINIMY 10 Oxidation (M) _TPFTVINIM(Oxidation (M))Y_ TPFTVINIM(1)Y TPFTVINIM(82)Y 0 0 1 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8095703125 2 607.809925 1213.6053 NaN NaN NaN NaN NaN NaN NaN 84.56 1 84.623 84.123 85.123 0.063171 0 0 0 0.021483 1 46793 46793 81.89 45.763 1 65186 7164 43415 44392 76061 76061 1240 0.007038057113049945 TPFTVINIMY 10 Oxidation (M) _TPFTVINIM(Oxidation (M))Y_ TPFTVINIM(1)Y TPFTVINIM(120)Y 0 0 1 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MSMS AL20221201_MKP_PDAC_01 4 607.8074951171875 2 607.809925 1213.6053 NaN NaN NaN NaN NaN NaN NaN 93.164 1 86.988 86.488 87.488 -6.1757 0 0 0 6.0236E-06 1 61649 61649 115.69 65.759 1 65187 7164 43415 44392 76062 76062 1240 0.007038057113049945 TPFTVINIMY 10 Unmodified _TPFTVINIMY_ 0 0 0 nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46;ENST00000508781.5_1_5:110073914-110092698:+|nuORF nc|ENSG00000164209|Q96AG3-3|SLC25A46 nc|ENSG00000164209|Q96AG3-3|SLC25A46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8145751953125 2 599.812467 1197.61038 0.40025 0.00024008 -2.3267 -0.0013956 -1.9265 -0.0011555 599.8112354533013 100.44 0.20242 94.268 94.215 94.418 -6.1757 19 12 2 0 0 0 0.0073675 1 67170 67170 92.491 29.919 1 38807000 65188 7164 43415 44393 76063 76063 0.019481095739138254 TPFVDPRVY 9 Unmodified _TPFVDPRVY_ 0 0 0 nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2877197265625 2 547.287474 1092.5604 0.27808 0.00015219 0.17396 9.5208E-05 0.45205 0.0002474 547.2874514615976 52.8 0.35593 52.348 52.159 52.515 -0.45173 53 17 4 0 0 0 0.017075 2 28479 28479;28588 66.457 43.72 1 24905000 65189 6319 43416 44394 76064;76065 76064 0.01781742960270094 TPFVDPRVY 9 Unmodified _TPFVDPRVY_ 0 0 0 nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2870483398438 2 547.287474 1092.5604 0.79277 0.00043387 -0.26366 -0.0001443 0.52912 0.00028958 547.2876704469197 52.449 0.2178 52.391 52.289 52.506 -0.058918 18 10 2 0 0 0 0.085319 1 28436 28436 36.506 19.393 1 1845700 65190 6319 43416 44394 76066 76066 0.01781742960270094 TPFVDPRVY 9 Unmodified _TPFVDPRVY_ 0 0 0 nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000154310|Q9UKE5-8|TNIK MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2909545898438 2 547.287474 1092.5604 1.1611 0.00063545 1.2844 0.00070292 2.4455 0.0013384 547.288564206113 59.147 0.52794 53.073 52.798 53.326 -6.0745 62 28 3 0 0 0 0.0082548 1 37852 37852 96.367 70.967 1 102110000 65191 6319 43416 44394 76067 76067 0.01781742960270094 TPFVEGLSY 9 Unmodified _TPFVEGLSY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7531433105469 2 506.752933 1011.49131 0.60402 0.00030609 -0.11085 -5.6171E-05 0.49318 0.00024992 506.7528044936252 66.501 0.44496 66.501 66.325 66.77 0 66 19 5 0 0 0 0.0082281 2 37129 37032;37129 92.822 34.012 1 48584000 65192 9206 43417 44395 76068;76069 76069 -0.013973410592939217 TPFVEGLSY 9 Unmodified _TPFVEGLSY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7536926269531 2 506.752933 1011.49131 0.0058442 2.9616E-06 -0.36083 -0.00018285 -0.35498 -0.00017989 506.752793024558 67.128 0.44476 66.646 66.399 66.844 -0.48223 64 20 4 0 0 0 0.012148 2 36579 36579;36682 74.423 45.936 1 37706000 65193 9206 43417 44395 76070;76071 76070 -0.013973410592939217 TPFVEGLSY 9 Unmodified _TPFVEGLSY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7534790039062 2 506.752933 1011.49131 0.84935 0.00043041 0.56111 0.00028434 1.4105 0.00071475 506.7529907025214 74.049 0.72084 67.874 67.512 68.233 -6.1757 97 36 4 0 0 0 0.0090851 5 48505 48197;48265;48382;48505;48624 85.357 49.313 1 165570000 65194 9206 43417 44395 76072;76073;76074;76075;76076 76075 -0.013973410592939217 TPFVEGLSY 9 Unmodified _TPFVEGLSY_ 0 0 0 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 ENSG00000183864|ENST00000327492|TOB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 506.752933 1011.49131 1.0343 0.00052413 -1.1503 -0.00058294 -0.11605 -5.881E-05 506.7524276893114 66.616 0.28455 66.626 66.5 66.784 0.0095596 0.035074 -0.00080024 NaN 92.822 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5541400 65195 9206 43417 44395 -0.013973410592939217 TPFVHMPF 8 Unmodified _TPFVHMPF_ 0 0 0 REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3 REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.24365234375 2 488.241481 974.468409 2.5977 0.0012683 1.6841 0.00082224 4.2817 0.0020905 488.2423228495051 96.617 0.35333 96.61 96.445 96.799 -0.007019 21 12 3 0 0 0 0.72953 1 53675 53675 14.582 2.9414 1 1789600 + 65196 29619 43418 44396 76077 76077 -0.019846386577455633 TPFVHMPF 8 Unmodified _TPFVHMPF_ 0 0 0 REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3 REV__nc|ENSG00000126216|Q96CW5-3|TUBGCP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.241481 974.468409 2.5977 0.0012683 1.6841 0.00082224 4.2817 0.0020905 488.2423228495051 96.617 0.35333 96.61 96.445 96.799 -0.007019 0 0 NaN 14.582 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1789600 + 65197 29619 43418 44396 -0.019846386577455633 TPFVSTKSY 9 Unmodified _TPFVSTKSY_ 0 0 0 REV__nc|ENSG00000172243|Q9BXN2-8|CLEC7A REV__nc|ENSG00000172243|Q9BXN2-8|CLEC7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.266845703125 2 515.266207 1028.51786 NaN NaN NaN NaN NaN NaN NaN 66.539 1 66.539 66.039 67.039 0 0 0 0 0.12337 1 37110 37110 39.957 7.6518 1 + 65198 29785 43419 44397 76078 76078 0.004743478320506256 TPGDDFLCL 9 Unmodified _TPGDDFLCL_ 0 0 0 nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7251281738281 2 490.723318 979.432083 0.84555 0.00041493 1.0564 0.00051838 1.9019 0.00093331 490.72405125258217 64.341 0.2741 63.856 63.675 63.949 -0.48512 18 12 2 0 0 0 0.54444 1 35085 35085 4.756 0 1 1263100 65199 805 43420 44398 76079 76079 -0.05845560345119338 TPGEFRRPRL 10 Unmodified _TPGEFRRPRL_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.848388671875 2 614.849096 1227.68364 0.51342 0.00031568 -0.33293 -0.0002047 0.18049 0.00011098 614.8487896090774 63.138 0.16732 62.652 62.583 62.75 -0.48617 13 7 2 0 0 0 0.5933 1 34456 34456 11.495 0 1 964110 65200 2474 43421 44399 76080 76080 0.0789041913139954 TPGEPVPATF 10 Unmodified _TPGEPVPATF_ 0 0 0 REV__ENSG00000128805|ENST00000249601|ARHGAP22 REV__ENSG00000128805|ENST00000249601|ARHGAP22 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.7857360839844 2 508.258382 1014.50221 1.0372 0.00052718 0.61593 0.00031305 1.6532 0.00084023 508.25874668875736 71.589 0.35028 65.414 65.206 65.556 -6.1757 30 17 2 0 0 0 0.22811 1 46757 46757 14.838 0 1 34554000 + 65201 19634 43422 44400 76081 76081 -0.0044593868499305245 TPGEVIPVF 9 Unmodified _TPGEVIPVF_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7659301757812 2 479.765843 957.517133 0.26298 0.00012617 0.29785 0.0001429 0.56083 0.00026907 479.76589097498425 79.807 0.32867 79.807 79.662 79.99 0 23 14 2 0 0 0 0.30562 1 44314 44314 16.942 4.4107 1 842410 65202 2345 43423 44401 76082 76082 0.03667553183004202 TPGEVIPVF 9 Unmodified _TPGEVIPVF_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5257568359375 1 958.52441 957.517133 -0.035896 -3.4408E-05 1.0378 0.0009948 1.0019 0.00096039 958.5246951920503 79.854 0.24747 79.854 79.729 79.977 0 15 10 2 0 0 0 0.078417 1 44324 44324 38.151 7.9264 1 468860 65203 2345 43423 44401 76083 76083 0.03667553183004202 TPGEVIPVF 9 Unmodified _TPGEVIPVF_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7658081054688 2 479.765843 957.517133 NaN NaN NaN NaN NaN NaN NaN 79.994 1 79.994 79.494 80.494 0 0 0 0 0.82739 1 44422 44422 4.3292 0 1 65204 2345 43423 44401 76084 76084 0.03667553183004202 TPGEVIPVF 9 Unmodified _TPGEVIPVF_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7668762207031 2 479.765843 957.517133 1.0223 0.00049048 0.68726 0.00032972 1.7096 0.0008202 479.76627383862115 80.334 0.29538 79.844 79.689 79.984 -0.48932 19 11 2 0 0 0 0.41742 1 44021 44021 11.64 3.047 1 433600 65205 2345 43423 44401 76085 76085 0.03667553183004202 TPGEVIPVF 9 Unmodified _TPGEVIPVF_ 0 0 0 nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 nc|ENSG00000105643|Q8TBH0-2|ARRDC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.765843 957.517133 1.0223 0.00049048 0.68726 0.00032972 1.7096 0.0008202 479.76627383862115 80.334 0.29538 79.844 79.689 79.984 -0.48932 0.018504 0.00027112 NaN 16.942 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 433600 65206 2345 43423 44401 0.03667553183004202 TPGFPDSPY 9 Unmodified _TPGFPDSPY_ 0 0 0 ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.4364013671875 1 980.435989 979.428712 0.58731 0.00057582 1.253 0.0012285 1.8403 0.0018043 980.4370803730969 51.392 0.17373 51.392 51.302 51.475 0 11 7 2 0 0 0 0.010818 1 28373 28373 78.149 56.403 1 1319400 65207 6006 43424 44402 76086 76086 -0.06182487127477998 TPGFPDSPY 9 Unmodified _TPGFPDSPY_ 0 0 0 ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7229919433594 2 490.721633 979.428712 0.69233 0.00033974 -0.51537 -0.0002529 0.17696 8.6836E-05 490.7219276664821 51.374 0.19726 51.374 51.278 51.475 0 12 8 2 0 0 0 0.2143 1 28396 28396 21.747 5.9784 1 1364400 65208 6006 43424 44402 76087 76087 -0.06182487127477998 TPGGGGGG 8 Unmodified _TPGGGGGG_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2490234375 1 559.247066 558.239789 -0.2318 -0.00012963 -0.93347 -0.00052204 -1.1653 -0.00065167 559.246643229308 30.701 0.22509 30.701 30.546 30.771 0 13 10 2 0 0 0 0.80676 1 15941 15941 2.5775 0 1 1551100 65209 10288 43425 44403 76088 76088 -0.057000949102871346 TPGGTRIIY 9 Unmodified _TPGGTRIIY_ 0 0 0 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.274658203125 2 489.274367 976.53418 0.57073 0.00027924 -2.5847 -0.0012646 -2.014 -0.00098539 489.2727782030495 36.721 0.57164 36.721 36.566 37.138 0 66 27 4 0 0 0 0.078314 1 19474 19474 38.176 15.027 1 21497000 65210 5959;9602 43426 44404 76089 76089 0.04497473788808293 TPGGTRIIY 9 Unmodified _TPGGTRIIY_ 0 0 0 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2745666503906 2 489.274367 976.53418 -0.14491 -7.0899E-05 0.68012 0.00033277 0.53522 0.00026187 489.2746828679322 36.962 0.48089 36.712 36.51 36.99 -0.2497 59 20 4 0 0 0 0.015688 2 19359 19359;19466 67.838 38.757 1 45221000 65211 5959;9602 43426 44404 76090;76091 76090 0.04497473788808293 TPGGTRIIY 9 Unmodified _TPGGTRIIY_ 0 0 0 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2;ENSG00000187840|ENST00000338825|EIF4EBP1 ENSG00000148730|ENST00000373218|EIF4EBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2756652832031 2 489.274367 976.53418 0.86494 0.00042319 -0.053318 -2.6087E-05 0.81162 0.0003971 489.27426385976764 41.109 0.93501 36.502 36.034 36.969 -4.6079 136 59 4 0 0 0 0.033587 3 24496 24496;24633;24778 53.404 23.574 1 250650000 65212 5959;9602 43426 44404 76092;76093;76094 76092 0.04497473788808293 TPGNFFHVL 9 Unmodified _TPGNFFHVL_ 0 0 0 nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH nc|ENSG00000105953|Q02218-2|OGDH nc|ENSG00000105953|Q02218-2|OGDH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2684936523438 2 516.269084 1030.52362 NaN NaN NaN NaN NaN NaN NaN 69.385 1 69.415 68.915 69.915 0.030914 0 0 0 0.014983 1 38136 38136 85.272 49.145 1 65213 2381 43427 44405 76095 76095 0.009574911343861459 TPGPAGSRL 9 Unmodified _TPGPAGSRL_ 0 0 0 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2377319335938 2 428.237784 854.461016 0.56967 0.00024396 1.659 0.00071043 2.2286 0.00095438 428.23819534652574 26.461 0.31602 23.51 23.358 23.674 -2.9511 31 16 3 0 0 0 0.029718 1 14596 14596 55.503 3.8729 1 10926000 65214 8080 43428 44406 76096 76096 0.027963450661786737 TPGPARLSG 9 Unmodified _TPGPARLSG_ 0 0 0 ENST00000478389.5_1_20:57566005-57566065:+|nuORF ENST00000478389.5_1_20:57566005-57566065:+|nuORF ENST00000478389.5_1_20:57566005-57566065:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2375793457031 2 428.237784 854.461016 -0.27303 -0.00011692 0.1787 7.6528E-05 -0.094329 -4.0395E-05 428.23793891643146 23.579 0.30746 23.579 23.407 23.714 0 26 15 2 0 0 0 0.2546 2 11970 11970;12074 19.362 0 1 2584400 65215 14015 43429 44407 76097;76098 76097 0.027963450661900424 TPGPKSHYHLH 11 Unmodified _TPGPKSHYHLH_ 0 0 0 REV__nc|ENSG00000165821|Q9Y467-3|SALL2 REV__nc|ENSG00000165821|Q9Y467-3|SALL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.325439453125 2 637.325454 1272.63635 -0.23499 -0.00014977 -0.69693 -0.00044417 -0.93192 -0.00059394 637.3248681367581 51.208 0.21514 50.794 50.661 50.876 -0.41351 30 10 4 0 0 0 0.51719 1 27580 27580 24.991 1.2012 1 3841900 + 65216 29758 43430 44408 76099 76099 0.010941398604245478 TPGPLLEM 8 Unmodified _TPGPLLEM_ 0 0 0 nc|ENSG00000138795|Q9UJU2-6|LEF1 nc|ENSG00000138795|Q9UJU2-6|LEF1 nc|ENSG00000138795|Q9UJU2-6|LEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 857.4458618164062 1 857.443717 856.43644 1.3277 0.0011384 -0.68491 -0.00058727 0.6428 0.00055116 857.4435474552128 79.413 0.32934 73.238 73.04 73.37 -6.1757 31 18 2 0 0 0 0.44122 1 52054 52054 40.449 2.2974 1 13259000 65217 16227 43431 44409 76100 76100 0.0024794886845711517 TPGPPPISY 9 Unmodified _TPGPPPISY_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7435607910156 2 464.742368 927.470183 0.92224 0.0004286 1.8651 0.00086677 2.7873 0.0012954 464.7428696514088 49.384 0.51893 49.384 49.152 49.671 0 63 23 4 0 0 0 0.012148 1 27237 27237 74.423 40.32 1 4926500 65218 3643 43432 44410 76101 76101 0.00354693631857117 TPGPPPISY 9 Unmodified _TPGPPPISY_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.7423095703125 2 464.742368 927.470183 0.55238 0.00025671 1.4701 0.0006832 2.0224 0.00093991 464.7429211705637 56.883 0.35288 50.906 50.703 51.056 -5.9769 32 20 2 0 0 0 0.070838 1 36403 36403 39.957 1.8061 1 21257000 65219 3643 43432 44410 76102 76102 0.00354693631857117 TPGPQPTL 8 Unmodified _TPGPQPTL_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.7217407226562 2 405.721436 809.428318 NaN NaN NaN NaN NaN NaN NaN 37.731 1 37.731 37.231 38.231 0 0 0 0 0.2509 1 20104 20104 77.984 17.595 1 65220 10217 43433 44411 76103 76103 0.015981379433242182 TPGPQPTL 8 Unmodified _TPGPQPTL_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.7214965820312 2 405.721436 809.428318 0.74348 0.00030165 0.20948 8.499E-05 0.95296 0.00038663 405.7215032839685 43.748 0.37775 38.983 38.826 39.204 -4.7648 39 23 2 0 0 0 0.26159 2 26583 26583;26746 60.39 15.983 1 6698500 65221 10217 43433 44411 76104;76105 76104 0.015981379433242182 TPGPVGLAL 9 Unmodified _TPGPVGLAL_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;nc|ENSG00000167962|Q86UK7-4|ZNF598;ENST00000565396.5_1_16:2048964-2050409:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.487548828125 1 824.48763 823.480354 -0.26139 -0.00021551 0.75137 0.0006195 0.48998 0.00040398 824.4881771423468 68.977 0.36644 68.497 68.33 68.697 -0.48071 20 15 2 0 0 0 0.027803 1 37719 37719 56.541 2.9657 1 929670 65222 7685 43434 44412 76106 76106 0.06155301357091503 TPGQHCRVPR 10 Unmodified _TPGQHCRVPR_ 0 0 0 REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.49560546875 3 384.201458 1149.58254 NaN NaN NaN NaN NaN NaN NaN 74.509 1 74.509 74.009 75.009 0 0 0 0 0.97302 1 41459 41459 1.7423 0 1 + 65223 27195 43435 44413 76107 76107 0.01373644157047238 TPGTVLDWC 9 Unmodified _TPGTVLDWC_ 0 0 0 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B;ENST00000567012.5_1_16:70398922-70400166:+|nuORF;nc|ENSG00000109832|Q9UHL0-2|DDX25;ENSG00000109832|ENST00000263576|DDX25 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENSG00000109832|ENST00000263576|DDX25 ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2767639160156 2 496.23131 990.448068 0.52061 0.00025834 -4.0993 -0.0020342 -3.5787 -0.0017759 496.2294823567427 62.906 0.32409 62.42 62.365 62.689 -0.48617 19 15 2 0 0 0 0.18521 1 34400 34400 16.942 1.0951 1 2563700 65224 6512;2678 43436 44414 76108 76108 -0.04753854108219002 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5136413574219 3 381.513696 1141.51926 0.68429 0.00026107 -0.65883 -0.00025135 0.025465 9.7152E-06 381.5134406787059 46.123 0.85739 46.123 45.882 46.74 0 138 40 6 0 0 0 0.0083938 3 25202 25092;25202;25316 86.332 62.542 1 506740000 65225 2702 43437 44415 76109;76110;76111 76110 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.767578125 2 571.766906 1141.51926 0.99042 0.00056629 -0.12884 -7.3665E-05 0.86158 0.00049262 571.766519963987 46.113 0.46857 46.113 45.882 46.351 0 90 22 6 0 0 0 0.00022959 2 25104 25104;25215 149.99 115.89 1 94994000 65226 2702 43437 44415 76112;76113 76112 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.26904296875 2 571.766906 1141.51926 0.56502 0.00032306 -0.12852 -7.3486E-05 0.43649 0.00024957 571.7668183410805 66.828 0.22697 66.828 66.725 66.952 0 20 10 2 0 0 0 0.2143 1 37256 37256 21.747 0.20967 1 3251000 65227 2702 43437 44415 76114 76114 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8484802246094 3 381.513696 1141.51926 0.54157 0.00020662 -0.54341 -0.00020732 -0.0018381 -7.0127E-07 381.513437296917 46.399 0.54375 46.063 45.86 46.404 -0.33664 96 27 5 0 0 0 0.010818 2 24761 24761;24869 61.602 36.611 1 565540000 65228 2702 43437 44415 76115;76116 76115 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.76708984375 2 571.766906 1141.51926 0.69027 0.00039468 0.17751 0.00010149 0.86778 0.00049617 571.766560360884 46.391 0.39103 46.054 45.84 46.231 -0.33664 87 19 7 0 0 0 6.615E-07 2 24880 24775;24880 164.52 124.56 1 119220000 65229 2702 43437 44415 76117;76118 76118 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7676391601562 2 571.766906 1141.51926 0.6032 0.00034489 0.6579 0.00037617 1.2611 0.00072106 571.7671933762967 67.356 0.30965 66.874 66.675 66.984 -0.48219 30 13 3 0 0 0 0.2143 1 36789 36789 21.747 5.8995 1 1935600 65230 2702 43437 44415 76119 76119 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5142822265625 3 381.513696 1141.51926 0.62232 0.00023742 0.17955 6.8502E-05 0.80187 0.00030593 381.51374580370907 46.146 0.34289 46.118 45.948 46.291 -0.028011 44 15 4 0 0 0 0.0090948 2 24774 24774;24876 67.838 49.465 1 24206000 65231 2702 43437 44415 76120;76121 76120 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.2686157226562 2 571.766906 1141.51926 0.61409 0.00035112 0.19026 0.00010879 0.80436 0.00045991 571.76670459644 46.14 0.2091 46.112 46.02 46.229 -0.028015 22 9 3 0 0 0 0.010818 1 24810 24810 78.149 55.001 1 3299000 65232 2702 43437 44415 76122 76122 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5142517089844 3 381.513696 1141.51926 1.4208 0.00054204 -0.29606 -0.00011295 1.1247 0.0004291 381.5135495048663 51.133 0.77444 45.484 45.17 45.945 -5.649 172 47 5 0 0 0 0.0026776 4 31975 31975;32110;32248;32373 103.42 73.579 1 1847699999.9999998 65233 2702 43437 44415 76123;76124;76125;76126 76123 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.767333984375 2 571.766906 1141.51926 1.0776 0.00061611 -0.3868 -0.00022116 0.69076 0.00039496 571.7668349228968 51.135 0.63614 45.486 45.053 45.69 -5.649 128 38 6 0 0 0 0.0067112 3 32099 32099;32224;32295 112.59 76.549 1 860160000 65234 2702 43437 44415 76127;76128;76129 76127 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.51416015625 3 381.513696 1141.51926 0.95499 0.00036434 -0.09927 -3.7873E-05 0.85572 0.00032647 381.8480006252163 51.768 0.33946 46.033 45.826 46.166 -5.7345 39 21 2 0 0 0 0.0083938 2 32511 32511;32690 86.332 62.542 1 41194000 65235 2702 43437 44415 76130;76131 76130 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MSMS AL20221201_MKP_PDAC_01 4 571.7673950195312 2 571.766906 1141.51926 NaN NaN NaN NaN NaN NaN NaN 51.658 1 46.009 45.509 46.509 -5.649 0 0 0 5.056E-07 1 32525 32525 149.99 115.89 1 65236 2702 43437 44415 76132 76132 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MSMS AL20221201_MKP_PDAC_01 4 381.5150756835938 3 381.513696 1141.51926 NaN NaN NaN NaN NaN NaN NaN 52.117 1 46.382 45.882 46.882 -5.7345 0 0 0 0.047623 1 32878 32878 45.74 17.245 1 65237 2702 43437 44415 76133 76133 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MSMS AL20221201_MKP_PDAC_01 4 381.5150146484375 3 381.513696 1141.51926 NaN NaN NaN NaN NaN NaN NaN 52.302 1 46.567 46.067 47.067 -5.7345 0 0 0 0.022863 1 33013 33013 59.368 35.579 1 65238 2702 43437 44415 76134 76134 -0.045840180791856255 TPHDFIEHF 9 Unmodified _TPHDFIEHF_ 0 0 0 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 ENSG00000110092|ENST00000227507|CCND1 MSMS AL20221201_MKP_PDAC_01 4 381.5146179199219 3 381.513696 1141.51926 NaN NaN NaN NaN NaN NaN NaN 52.479 1 46.745 46.245 47.245 -5.7345 0 0 0 0.020219 1 33128 33128 61.602 37.812 1 65239 2702 43437 44415 76135 76135 -0.045840180791856255 TPHEEALSY 9 Unmodified _TPHEEALSY_ 0 0 0 ENST00000463441.5_1_7:150025734-150025836:+|nuORF ENST00000463441.5_1_7:150025734-150025836:+|nuORF ENST00000463441.5_1_7:150025734-150025836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7435302734375 2 523.743096 1045.47164 1.389 0.00072748 -0.92649 -0.00048524 0.46252 0.00024224 523.7426781678681 33.767 0.28599 29.781 29.608 29.894 -3.9853 28 15 2 0 0 0 0.022193 1 19327 19327 61.357 15.337 1 5316200 65240 13693 43438 44416 76136 76136 -0.049277170700406714 TPHFLSVCRPN 11 Unmodified _TPHFLSVCRPN_ 0 0 0 ENST00000588360.1_1_19:11471945-11474676:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2;nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2 ENST00000588360.1_1_19:11471945-11474676:+|nuORF ENST00000588360.1_1_19:11471945-11474676:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2173767089844 3 424.216885 1269.62883 0.11293 4.7908E-05 0.43291 0.00018365 0.54585 0.00023156 424.21737541269505 19.609 0.29751 19.617 19.481 19.779 0.0078487 38 16 3 0 0 0 0.71503 1 10027 10027 2.8433 0 1 1777500 65241 2332 43439 44417 76137 76137 0.004796642684823382 TPHGDYIEF 9 Unmodified _TPHGDYIEF_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.745849609375 2 539.745639 1077.47673 0.44335 0.0002393 -0.42733 -0.00023065 0.016017 8.6453E-06 539.7453998621559 50.03 0.34982 50.03 49.859 50.209 0 54 16 4 0 0 0 0.042911 2 27631 27523;27631 48.346 33.508 1 46437000 65242 463 43440 44418 76138;76139 76139 -0.058914132074278314 TPHGDYIEF 9 Unmodified _TPHGDYIEF_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7461547851562 2 539.745639 1077.47673 0.80228 0.00043303 -1.2056 -0.00065071 -0.40331 -0.00021768 539.7457039271673 55.685 0.46154 49.764 49.507 49.969 -5.9211 70 27 3 0 0 0 0.042911 2 35532 35399;35532 48.346 22.947 1 59621000 65243 463 43440 44418 76140;76141 76141 -0.058914132074278314 TPHGDYIEF 9 Unmodified _TPHGDYIEF_ 0 0 0 nc|ENSG00000012779|P09917-3|ALOX5;ENSG00000012779|ENST00000374391|ALOX5;nc|ENSG00000012779|P09917-5|ALOX5;nc|ENSG00000012779|P09917-4|ALOX5;nc|ENSG00000012779|P09917-2|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 nc|ENSG00000012779|P09917-3|ALOX5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 539.745639 1077.47673 0.72019 0.00038872 0.58576 0.00031616 1.306 0.00070488 539.7452896099593 50.505 0.21932 50.091 49.95 50.17 -0.41351 0.12929 0.0012132 NaN 48.346 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1913500 65244 463 43440 44418 -0.058914132074278314 TPHGLFILF 9 Unmodified _TPHGLFILF_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7989501953125 2 522.797478 1043.5804 2.1309 0.0011141 -1.3029 -0.00068117 0.828 0.00043288 522.7967324419577 95.741 0.56969 95.746 95.46 96.03 0.0041504 79 21 5 0 0 0 0.016184 3 53092 53092;53191;53292 67.344 19.829 1 76412000 65245 3421 43441 44419 76142;76143;76144 76142 0.060355386908895525 TPHGLFILF 9 Unmodified _TPHGLFILF_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.797607421875 2 522.797478 1043.5804 0.88955 0.00046506 0.11074 5.7896E-05 1.0003 0.00052295 522.7972441223304 100.53 0.19058 94.352 94.254 94.445 -6.1757 35 11 5 0 0 0 0.012148 1 67219 67219 74.423 10.86 1 473990000 65246 3421 43441 44419 76145 76145 0.060355386908895525 TPHLRNLAV 9 Unmodified _TPHLRNLAV_ 0 0 0 nc|ENSG00000180822|Q5JS54-3|PSMG4;ENSG00000180822|ENST00000438998|PSMG4;nc|ENSG00000180822|Q5JS54-2|PSMG4 nc|ENSG00000180822|Q5JS54-3|PSMG4 nc|ENSG00000180822|Q5JS54-3|PSMG4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8042602539062 2 510.801083 1019.58761 0.22841 0.00011667 2.4046 0.0012283 2.633 0.0013449 510.80238937480885 38.492 0.29284 34.124 34.012 34.305 -4.3689 41 18 3 0 0 0 0.040683 1 22700 22700 49.554 9.597 1 35210000 65247 8927 43442 44420 76146 76146 0.07860271291315257 TPHPAYATF 9 Unmodified _TPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7456359863281 2 502.745442 1003.47633 0.78121 0.00039275 -0.85504 -0.00042987 -0.073828 -3.7117E-05 502.74489529922687 38.913 0.39215 38.913 38.703 39.096 0 47 17 4 0 0 0 0.019303 2 20754 20754;20878 64.236 35.749 1 22866000 65248 16348 43443 44421 76147;76148 76147 -0.02526788136617597 TPHPAYATF 9 Unmodified _TPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7454833984375 2 502.745442 1003.47633 -0.41388 -0.00020808 -0.11816 -5.9406E-05 -0.53205 -0.00026748 502.745411424997 39.187 0.27634 38.9 38.763 39.039 -0.28687 37 12 4 0 0 0 0.0095811 2 20635 20635;20739 81.613 55.272 1 20414000 65249 16348 43443 44421 76149;76150 76149 -0.02526788136617597 TPHPAYATF 9 Unmodified _TPHPAYATF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7453002929688 2 502.745442 1003.47633 0.75544 0.00037979 -0.73097 -0.00036749 0.024466 1.23E-05 502.74506377866504 43.458 0.49186 38.693 38.493 38.985 -4.7648 82 32 3 0 0 0 0.031062 2 26457 26325;26457 54.774 27.89 1 87738000 65250 16348 43443 44421 76151;76152 76152 -0.02526788136617597 TPHPEGYLF 9 Unmodified _TPHPEGYLF_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7601318359375 2 530.758549 1059.50255 1.4271 0.00075747 -0.19399 -0.00010296 1.2332 0.00065451 530.7586350810415 58.951 0.4465 52.877 52.618 53.065 -6.0745 40 24 2 0 0 0 0.16226 1 37894 37894 26.884 12.045 1 22093000 65251 2069 43444 44422 76153 76153 -0.024825189651664914 TPHQTFVRL 9 Unmodified _TPHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.8739624023438 3 366.873336 1097.59818 -0.21755 -7.9815E-05 1.1947 0.0004383 0.97714 0.00035849 366.87379457331275 37.252 0.33979 36.981 36.774 37.114 -0.27133 36 13 4 0 0 0 0.01958 1 19537 19537 51.488 34.922 1 10732000 65252 3388 43445 44423 76154 76154 0.053282539457541134 TPHQTFVRL 9 Unmodified _TPHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8736877441406 3 366.873336 1097.59818 -0.29373 -0.00010776 0.90942 0.00033364 0.61569 0.00022588 366.8736749203686 36.893 0.32238 36.915 36.747 37.07 0.021545 55 14 5 0 0 0 0.015688 2 19520 19520;19625 55.249 38.683 1 31811000 65253 3388 43445 44423 76155;76156 76155 0.053282539457541134 TPHQTFVRL 9 Unmodified _TPHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8067016601562 2 549.806365 1097.59818 -0.22074 -0.00012136 1.0146 0.00055783 0.79385 0.00043646 549.8068342285272 36.893 0.21066 36.914 36.816 37.026 0.021545 22 9 3 0 0 0 0.024882 1 19556 19556 58.679 10.333 1 3168600 65254 3388 43445 44423 76157 76157 0.053282539457541134 TPHQTFVRL 9 Unmodified _TPHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8739318847656 3 366.873336 1097.59818 1.5349 0.00056311 0.026104 9.577E-06 1.561 0.00057269 366.87336410135305 40.656 0.53239 36.127 35.873 36.405 -4.5294 103 32 4 0 0 0 0.0089732 2 24355 24218;24355 70.929 53.486 1 83342000 65255 3388 43445 44423 76158;76159 76159 0.053282539457541134 TPHQTFVRL 9 Unmodified _TPHQTFVRL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.8067626953125 2 549.806365 1097.59818 0.86356 0.00047479 -1.0469 -0.0005756 -0.18336 -0.00010081 549.806139982131 40.67 0.36842 36.141 35.971 36.339 -4.5294 47 22 3 0 0 0 0.0074135 1 24266 24266 110.67 45.44 1 12333000 65256 3388 43445 44423 76160 76160 0.053282539457541134 TPHSEIIFY 9 Unmodified _TPHSEIIFY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.779296875 2 553.779482 1105.54441 0.11759 6.5121E-05 -0.63871 -0.00035371 -0.52112 -0.00028858 553.7789464582779 56.298 0.55787 56.298 56.007 56.564 0 43 25 2 0 0 0 0.026094 1 31320 31320 57.471 33.451 1 63529000 65257 4159 43446 44424 76161 76161 -0.004139632766282375 TPHSEIIFY 9 Unmodified _TPHSEIIFY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7801513671875 2 553.779482 1105.54441 -0.032527 -1.8013E-05 0.39109 0.00021658 0.35856 0.00019856 553.7796106850569 56.774 0.42097 56.289 56.122 56.543 -0.48554 36 20 2 0 0 0 0.016184 2 30888 30782;30888 67.344 46.89 1 36644000 65258 4159 43446 44424 76162;76163 76163 -0.004139632766282375 TPHSEIIFY 9 Unmodified _TPHSEIIFY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.77978515625 2 553.779482 1105.54441 0.5668 0.00031388 0.1351 7.4813E-05 0.7019 0.0003887 553.7796559275782 62.027 0.56673 55.851 55.537 56.104 -6.1757 57 31 2 0 0 0 0.016184 2 39838 39838;39965 67.344 36.707 1 177610000 65259 4159 43446 44424 76164;76165 76164 -0.004139632766282375 TPHSEIIFY 9 Unmodified _TPHSEIIFY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 553.779482 1105.54441 0.052226 2.8921E-05 -1.596 -0.00088383 -1.5438 -0.00085491 554.2803820744263 56.402 0.11378 56.334 56.266 56.38 -0.068737 0.026872 -0.0015596 NaN 67.344 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1616500 65260 4159 43446 44424 -0.004139632766282375 TPHSYIDTY 9 Unmodified _TPHSYIDTY_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000491838.5_1_21:42598231-42618026:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.75146484375 2 548.750921 1095.48729 -0.36233 -0.00019883 0.57737 0.00031683 0.21504 0.00011801 548.7512604094228 34.469 0.26883 34.469 34.345 34.614 0 36 13 3 0 0 0 0.0088975 2 18222 18118;18222 104.8 75.718 1 63557000 65261 9034 43447 44425 76166;76167 76167 -0.05663430552999671 TPHSYIDTY 9 Unmodified _TPHSYIDTY_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000491838.5_1_21:42598231-42618026:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.749755859375 2 548.750921 1095.48729 0.78747 0.00043212 -0.23071 -0.0001266 0.55675 0.00030552 548.7504464515652 39.107 0.42585 34.656 34.399 34.825 -4.4509 78 27 4 0 0 0 0.0095811 2 23035 23035;23164 81.613 47.511 1 93927000 65262 9034 43447 44425 76168;76169 76168 -0.05663430552999671 TPHVAPVM 8 Oxidation (M) _TPHVAPVM(Oxidation (M))_ TPHVAPVM(1) TPHVAPVM(47) 0 0 1 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.222900390625 2 434.223288 866.432024 -0.21757 -9.4472E-05 0.30654 0.00013311 0.088974 3.8634E-05 434.2234313769117 23.822 0.17911 23.822 23.714 23.893 0 20 8 3 0 0 0 0.37649 1 12145 12145 46.921 12.734 1 1576000 65263 9910 43448 44426 76170 76170 1596 -0.006535155544497684 TPHVAPVM 8 Unmodified _TPHVAPVM_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2263793945312 2 426.225831 850.437109 0.90839 0.00038718 -0.11272 -4.8045E-05 0.79567 0.00033914 426.22588050922707 40.558 0.40204 36.029 35.873 36.275 -4.5294 43 24 3 0 0 0 0.40035 1 24225 24225 44.407 12.29 1 13237000 65264 9910 43448 44427 76171 76171 0.005907883081590626 TPHVMRFCKL 10 Unmodified _TPHVMRFCKL_ 0 0 0 REV__nc|ENSG00000148187|Q96E11-8|MRRF REV__nc|ENSG00000148187|Q96E11-8|MRRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2191162109375 3 411.219461 1230.63655 0.025425 1.0455E-05 0.14786 6.0805E-05 0.17329 7.126E-05 411.21909158112794 25.91 0.10686 25.937 25.897 26.004 0.026951 6 5 2 0 0 0 0.6606 1 13458 13458 3.8763 1.033 1 2986900 + 65265 20931 43449 44428 76172 76172 0.03046100264418783 TPHVMRFCKL 10 Unmodified _TPHVMRFCKL_ 0 0 0 REV__nc|ENSG00000148187|Q96E11-8|MRRF REV__nc|ENSG00000148187|Q96E11-8|MRRF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.219461 1230.63655 0.025425 1.0455E-05 0.14786 6.0805E-05 0.17329 7.126E-05 411.21909158112794 25.91 0.10686 25.937 25.897 26.004 0.026951 0 0 NaN 3.8763 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2986900 + 65266 20931 43449 44428 0.03046100264418783 TPHYEDIPF 9 Unmodified _TPHYEDIPF_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG;nc|ENSG00000132170|P37231-3|PPARG;ENST00000477039.5_1_3:12393091-12447643:+|nuORF ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.760009765625 2 559.761289 1117.50803 0.040778 2.2826E-05 -1.243 -0.00069578 -1.2022 -0.00067295 559.7599373984305 56.299 0.26257 56.299 56.162 56.424 0 21 12 2 0 0 0 0.026094 1 31293 31293 57.471 35.725 1 2648200 65267 4375 43450 44429 76173 76173 -0.04602840173333789 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4942016601562 1 977.493838 976.486562 0.15058 0.00014719 0.0024436 2.3886E-06 0.15302 0.00014958 977.4937631663139 61.466 0.43059 61.466 61.254 61.685 0 63 19 4 0 0 0 0.0036082 3 34282 34188;34282;34385 123.45 68.677 1 23912000 65268 5337 43451 44430 76174;76175;76176 76175 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2514038085938 2 489.250557 976.486562 0.24111 0.00011797 0.13941 6.8206E-05 0.38052 0.00018617 489.25055913346034 61.445 0.49158 61.445 61.215 61.707 0 80 22 5 0 0 0 0.022193 2 34193 34193;34293 61.357 38.209 1 65161000 65269 5337 43451 44430 76177;76178 76177 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2507019042969 2 489.250557 976.486562 0.68893 0.00033706 -0.2506 -0.00012261 0.43833 0.00021445 489.2505583286789 62.043 0.31667 61.556 61.387 61.704 -0.48764 38 14 3 0 0 0 0.03568 2 33744 33744;33855 52.268 23.782 1 5479100 65270 5337 43451 44430 76179;76180 76179 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 977.4939575195312 1 977.493838 976.486562 0.44199 0.00043204 -0.26131 -0.00025542 0.18068 0.00017661 977.4932827792371 62.006 0.29679 61.518 61.407 61.704 -0.48764 28 13 3 0 0 0 0.0083938 1 33765 33765 108 70.023 1 4732900 65271 5337 43451 44430 76181 76181 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2510986328125 2 489.250557 976.486562 0.83248 0.00040729 -0.0036152 -1.7687E-06 0.82887 0.00040552 489.250522980214 69.337 0.60703 63.161 62.84 63.447 -6.1757 90 33 4 0 0 0 0.013323 3 45412 45152;45287;45412 71.134 40.909 1 196360000 65272 5337 43451 44430 76182;76183;76184 76184 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 977.4940795898438 1 977.493838 976.486562 0.6521 0.00063743 -0.5873 -0.00057408 0.064806 6.3347E-05 977.4931224573943 69.304 0.51161 63.128 62.883 63.394 -6.1757 63 27 3 0 0 0 0.0036082 4 45311 45185;45211;45311;45434 123.45 77.43 1 73376000 65273 5337 43451 44430 76185;76186;76187;76188 76187 -0.002622252020501037 TPIDSNIAF 9 Unmodified _TPIDSNIAF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1 ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 489.250557 976.486562 0.53616 0.00026232 0.45934 0.00022473 0.9955 0.00048705 489.2507891901566 61.616 0.17627 61.584 61.514 61.691 -0.032787 0.05551 0.00033797 NaN 61.357 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1721900 65274 5337 43451 44430 -0.002622252020501037 TPIEERGDLF 10 Unmodified _TPIEERGDLF_ 0 0 0 nc|ENSG00000184517|Q6P2D0-2|ZFP1;ENST00000568079.5_1_16:75182493-75204229:+|nuORF;ENSG00000184517|ENST00000570010|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 nc|ENSG00000184517|Q6P2D0-2|ZFP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7984619140625 2 588.798403 1175.58225 0.48837 0.00028755 0.28115 0.00016554 0.76952 0.00045309 588.7991509988184 49.712 0.42699 49.712 49.582 50.009 0 39 19 3 0 0 0 0.0055438 1 27363 27363 96.936 39.464 1 13888000 65275 9265 43452 44431 76189 76189 0.0014850291818220285 TPIEEVKGLF 10 Unmodified _TPIEEVKGLF_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8153076171875 2 566.816064 1131.61758 NaN NaN NaN NaN NaN NaN NaN 68.466 1 68.466 67.966 68.966 0 0 0 0 0.96981 1 38164 38164 3.9444 0 1 65276 6810 43453 44432 76190 76190 0.057031654459933634 TPIEEVKGLF 10 Unmodified _TPIEEVKGLF_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;nc|ENSG00000161813|Q71RC2-5|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8152465820312 2 566.816064 1131.61758 0.41045 0.00023265 -0.36696 -0.000208 0.043492 2.4652E-05 566.815804711368 68.887 0.26393 68.406 68.264 68.528 -0.48071 26 11 3 0 0 0 0.038363 1 37613 37613 63.961 20.188 1 3215600 65277 6810 43453 44432 76191 76191 0.057031654459933634 TPIEGMLSH 9 Oxidation (M) _TPIEGM(Oxidation (M))LSH_ TPIEGM(1)LSH TPIEGM(89)LSH 0 0 1 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7420349121094 2 500.742042 999.469531 -0.28958 -0.00014501 0.4451 0.00022288 0.15552 7.7873E-05 500.74230518976526 26.956 0.27141 26.956 26.803 27.075 0 31 12 3 0 0 0 0.008678 1 13835 13835 88.904 52.777 1 8618500 65278 7997 43454 44433 76192 76192 1360 -0.030224690794852904 TPIEGMLSH 9 Oxidation (M) _TPIEGM(Oxidation (M))LSH_ TPIEGM(1)LSH TPIEGM(96)LSH 0 0 1 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7443237304688 2 500.742042 999.469531 1.0885 0.00054503 -0.9798 -0.00049063 0.10865 5.4405E-05 500.7420147995634 30.96 0.36628 27.464 27.254 27.621 -3.497 20 16 2 0 0 0 0.0082485 1 17476 17476 96.285 54.19 1 35358000 65279 7997 43454 44433 76193 76193 1360 -0.030224690794852904 TPIEGMLSH 9 Unmodified _TPIEGMLSH_ 0 0 0 nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 nc|ENSG00000170515|Q9UQ80-2|PA2G4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7453002929688 2 492.744585 983.474617 0.67579 0.00033299 0.34172 0.00016838 1.0175 0.00050137 492.74478960012533 48.933 0.41533 43.537 43.302 43.717 -5.3961 42 25 2 0 0 0 2.1289E-06 2 30427 30427;30564 158.2 90.859 1 70627000 65280 7997 43454 44434 76194;76195 76194 -0.017781652168764595 TPIEREIRL 9 Unmodified _TPIEREIRL_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2244567871094 3 376.224146 1125.65061 -0.42602 -0.00016028 0.077186 2.9039E-05 -0.34884 -0.00013124 376.22402829622746 41.597 0.23143 41.597 41.499 41.731 0 18 11 2 0 0 0 0.31356 1 22500 22500 16.566 6.2506 1 3712000 65281 1710 43455 44435 76196 76196 0.09280792288700468 TPIFDFRVF 9 Unmodified _TPIFDFRVF_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8078002929688 2 571.305667 1140.59678 0.76115 0.00043485 0.22655 0.00012943 0.9877 0.00056428 571.3057891825699 90.924 0.37139 90.961 90.767 91.139 0.036499 41 13 4 0 0 0 0.023481 2 50525 50525;50629 60.074 39.659 1 29487000 65282 9379 43456 44436 76197;76198 76197 0.03210619856986341 TPIFDFRVF 9 Unmodified _TPIFDFRVF_ 0 0 0 nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7;ENST00000533182.5_1_11:612647-613950:-|nuORF;ENST00000531912.1_1_11:613200-613578:-|nuORF nc|ENSG00000185507|Q92985-2|IRF7 nc|ENSG00000185507|Q92985-2|IRF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3042602539062 2 571.305667 1140.59678 1.1007 0.00062885 -2.2937 -0.0013104 -1.193 -0.00068156 571.3040891785098 99.473 0.13798 93.297 93.228 93.365 -6.1757 24 8 4 0 0 0 0.025842 1 66262 66262 57.722 23.32 1 288360000 65283 9379 43456 44436 76199 76199 0.03210619856986341 TPIIVSALGI 10 Unmodified _TPIIVSALGI_ 0 0 0 REV__ENSG00000157703|ENST00000674285|SVOPL REV__ENSG00000157703|ENST00000674285|SVOPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.3116149902344 2 492.310418 982.606283 0.43879 0.00021602 0.17481 8.6059E-05 0.61359 0.00030208 492.31049300362986 58.368 0.36701 57.877 57.723 58.09 -0.49079 56 17 4 0 0 0 0.1028 1 31700 31700 46.021 0 1 37447000 + 65284 21397 43457 44437 76200 76200 0.11428388142508084 TPIKAYSVL 9 Unmodified _TPIKAYSVL_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2955017089844 2 496.294768 990.574983 0.43901 0.00021788 0.36455 0.00018093 0.80357 0.00039881 496.29489569693874 49.035 0.26013 48.663 48.539 48.799 -0.37172 22 12 2 0 0 0 0.015688 1 26355 26355 67.838 29.864 1 3772800 65285 8814 43458 44438 76201 76201 0.0793181510841805 TPIKAYSVL 9 Unmodified _TPIKAYSVL_ 0 0 0 ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B ENSG00000179134|ENST00000610417|SAMD4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2955017089844 2 496.294768 990.574983 1.1326 0.00056211 -0.23228 -0.00011528 0.90034 0.00044683 496.2946175777408 54.449 0.25577 48.583 48.401 48.656 -5.8653 24 15 2 0 0 0 0.020316 1 34486 34486 63.227 28.826 1 11912000 65286 8814 43458 44438 76202 76202 0.0793181510841805 TPIMYWFPAH 10 Unmodified _TPIMYWFPAH_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8062744140625 2 631.804977 1261.5954 0.27256 0.0001722 -2.5478 -0.0016097 -2.2753 -0.0014375 631.8059620883172 40.476 0.16635 40.178 40.094 40.26 -0.29716 18 7 3 0 0 0 0.50944 1 21414 21414 15.847 3.6065 1 2455800 65287 829 43459 44439 76203 76203 -0.02493337503415205 TPINTRIEPYY 11 Unmodified _TPINTRIEPYY_ 0 0 0 ENSG00000119737|ENST00000394705|GPR75 ENSG00000119737|ENST00000394705|GPR75 ENSG00000119737|ENST00000394705|GPR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 683.8527221679688 2 683.853709 1365.69287 0.26913 0.00018404 -0.083612 -5.7179E-05 0.18551 0.00012686 683.8536191536884 45.523 0.33823 45.495 45.343 45.681 -0.028015 66 17 5 0 0 0 0.65706 1 24416 24416 10.151 1.995 1 271350000 65288 3465 43460 44440 76204 76204 0.0246472290643851 TPIQQLDTL 9 Unmodified _TPIQQLDTL_ 0 0 0 REV__ENSG00000232125|ENST00000452335|DYTN REV__ENSG00000232125|ENST00000452335|DYTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7847900390625 2 514.784764 1027.55498 NaN NaN NaN NaN NaN NaN NaN 71.331 1 71.331 70.831 71.831 0 0 0 0 0.82739 1 39734 39734 4.3292 0 1 + 65289 24410 43461 44441 76205 76205 0.04230019377791905 TPIRTSDVDY 10 Unmodified _TPIRTSDVDY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.7882690429688 2 583.788035 1165.56152 1.2551 0.00073272 -0.12022 -7.0184E-05 1.1349 0.00066253 583.7879176886794 35.993 0.31721 31.8 31.63 31.948 -4.1928 34 19 2 0 0 0 0.086206 2 20927 20927;21060 49.742 15.34 1 9685900 65290 8309 43462 44442 76206;76207 76206 -0.014640874614769928 TPISEHAVF 9 Unmodified _TPISEHAVF_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7582092285156 2 500.758549 999.502546 0.20102 0.00010066 -0.41956 -0.0002101 -0.21854 -0.00010944 500.75829222299814 44.101 0.21931 44.101 43.99 44.209 0 18 11 2 0 0 0 0.0083938 1 23975 23975 108 57.142 1 14228000 65291 4530 43463 44443 76208 76208 0.00277481034856919 TPISITSSY 9 Unmodified _TPISITSSY_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;ENST00000557815.1_1_15:70348635-70349989:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3 nc|ENSG00000140332|Q04726-2|TLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 968.4945068359375 1 968.493504 967.486227 0.56433 0.00054655 -1.3316 -0.0012897 -0.7673 -0.00074313 968.4927317228263 49.713 0.34908 49.713 49.51 49.859 0 31 15 3 0 0 0 0.0036082 1 27359 27359 123.45 59.214 1 5977800 65292 5225 43464 44444 76209 76209 0.0011835507808655166 TPISITSSY 9 Unmodified _TPISITSSY_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;ENST00000557815.1_1_15:70348635-70349989:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3 nc|ENSG00000140332|Q04726-2|TLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4940185546875 1 968.493504 967.486227 0.74715 0.00072361 0.57595 0.0005578 1.3231 0.0012814 968.4939116723322 50.225 0.19969 49.833 49.711 49.911 -0.3923 14 9 2 0 0 0 0.008678 1 27033 27033 88.904 40.558 1 1413900 65293 5225 43464 44444 76210 76210 0.0011835507808655166 TPISITSSY 9 Unmodified _TPISITSSY_ 0 0 0 nc|ENSG00000140332|Q04726-2|TLE3;nc|ENSG00000140332|Q04726-4|TLE3;nc|ENSG00000140332|Q04726|TLE3;ENSG00000140332|ENST00000451782|TLE3;nc|ENSG00000140332|Q04726-6|TLE3;nc|ENSG00000140332|Q04726-3|TLE3;nc|ENSG00000140332|Q04726-7|TLE3;ENST00000557815.1_1_15:70348635-70349989:-|nuORF nc|ENSG00000140332|Q04726-2|TLE3 nc|ENSG00000140332|Q04726-2|TLE3 MSMS AL20221201_MKP_PDAC_01 4 484.75048828125 2 484.75039 967.486227 NaN NaN NaN NaN NaN NaN NaN 57.594 1 51.567 51.067 52.067 -6.0275 0 0 0 0.014922 1 36843 36843 85.357 49.313 1 65294 5225 43464 44444 76211 76211 0.0011835507808655166 TPISRVGTCL 10 Unmodified _TPISRVGTCL_ 0 0 0 ENST00000481134.1_1_3:142170107-142170575:+|nuORF ENST00000481134.1_1_3:142170107-142170575:+|nuORF ENST00000481134.1_1_3:142170107-142170575:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7872924804688 2 523.786784 1045.55902 0.36578 0.00019159 -1.452 -0.00076053 -1.0862 -0.00056894 523.7873192758229 57.212 0.61829 56.723 56.304 56.923 -0.48974 88 28 5 0 0 0 0.42068 1 31028 31028 20.454 2.3186 1 18309000 65295 14073 43465 44445 76212 76212 0.03805785599865885 TPISSGTDSVL 11 Unmodified _TPISSGTDSVL_ 0 0 0 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.786376953125 2 538.777136 1075.53972 NaN NaN NaN NaN NaN NaN NaN 47.936 1 47.936 47.436 48.436 0 0 0 0 0.71476 1 26266 26266 16.149 3.1066 1 65296 2554 43466 44446 76213 76213 0.004971077899426746 TPITANRQIL 10 Unmodified _TPITANRQIL_ 0 0 0 REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2245178222656 3 376.224146 1125.65061 1.1208 0.00042168 -2.5571 -0.00096205 -1.4363 -0.00054036 376.2233886754639 46.09 0.25636 41.135 40.999 41.255 -4.9549 23 16 2 0 0 0 0.2667 1 28465 28465 29.437 6.7791 1 10583000 + 65297 27133 43467 44447 76214 76214 0.09280792288700468 TPITIFMEY 9 Oxidation (M) _TPITIFM(Oxidation (M))EY_ TPITIFM(1)EY TPITIFM(51)EY 0 0 1 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7760620117188 2 565.775551 1129.53655 -0.08097 -4.5811E-05 1.9256 0.0010894 1.8446 0.0010436 565.7770922326922 78.46 0.55992 77.974 77.705 78.265 -0.48596 51 22 3 0 0 0 0.038285 2 42872 42872;42980 50.855 14.811 1 4817100 65298 5057 43468 44448 76215;76216 76215 926 -0.023038585884023632 TPITIFMEY 9 Oxidation (M) _TPITIFM(Oxidation (M))EY_ TPITIFM(1)EY TPITIFM(57)EY 0 0 1 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7760009765625 2 565.775551 1129.53655 0.54855 0.00031035 -0.35283 -0.00019962 0.19572 0.00011073 565.7760826880517 85.605 0.30698 79.43 79.259 79.566 -6.1757 21 17 2 0 0 0 0.026094 1 56401 56401 57.471 28.985 1 13917000 65299 5057 43468 44448 76217 76217 926 -0.023038585884023632 TPIYEGRTY 9 Unmodified _TPIYEGRTY_ 0 0 0 ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4 ENSG00000144283|ENST00000389759|PKP4 ENSG00000144283|ENST00000389759|PKP4 MSMS AL20221201_MKP_PDAC_01 4 550.2756958007812 2 550.274564 1098.53457 NaN NaN NaN NaN NaN NaN NaN 36.539 1 32.255 31.755 32.755 -4.2835 0 0 0 0.011986 1 21348 21348 89.401 41.055 1 65300 5597 43469 44449 76218 76218 -0.010751512819979325 TPIYEGRTYY 10 Unmodified _TPIYEGRTYY_ 0 0 0 ENSG00000144283|ENST00000389759|PKP4;nc|ENSG00000144283|Q99569-2|PKP4 ENSG00000144283|ENST00000389759|PKP4 ENSG00000144283|ENST00000389759|PKP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.80615234375 2 631.806228 1261.5979 0.084898 5.3639E-05 0.34877 0.00022036 0.43367 0.000274 631.805957612552 40.019 0.17794 40.019 39.932 40.11 0 22 8 3 0 0 0 0.027278 1 21484 21484 69.338 29.389 1 6123700 65301 5597 43470 44450 76219 76219 -0.022432105647339995 TPKCCSGSSIT 11 Unmodified _TPKCCSGSSIT_ 0 0 0 REV__nc|ENSG00000103160|Q3SXM5-2|HSDL1 REV__nc|ENSG00000103160|Q3SXM5-2|HSDL1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.5572509765625 3 361.83182 1082.47363 1.2074 0.00043688 -1.0618 -0.00038421 0.14557 5.2673E-05 361.8313510518577 26.833 0.39664 23.797 23.589 23.985 -3.0365 46 20 3 0 0 0 0.30286 1 14842 14842 0.32927 0 1 18772000 + 65302 18287 43471 44451 76220 76220 -0.06430747648096258 TPKEFREISY 10 Unmodified _TPKEFREISY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.886962890625 3 423.88731 1268.6401 -0.32203 -0.00013651 -0.18386 -7.7934E-05 -0.50589 -0.00021444 423.8870454099966 35.362 0.23263 35.362 35.246 35.479 0 25 11 3 0 0 0 0.52659 1 18678 18678 14.957 7.4801 1 13939000 65303 5553 43472 44452 76221 76221 0.01652764843629484 TPKEFREISY 10 Unmodified _TPKEFREISY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8874206542969 3 423.88731 1268.6401 NaN NaN NaN NaN NaN NaN NaN 35.608 1 35.386 34.886 35.886 -0.2224 0 0 0 0.54704 1 18652 18652 23.964 16.019 1 65304 5553 43472 44452 76222 76222 0.01652764843629484 TPKEFREISY 10 Unmodified _TPKEFREISY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8874816894531 3 423.88731 1268.6401 0.89494 0.00037935 0.44297 0.00018777 1.3379 0.00056712 423.8875652022341 39.632 0.35618 35.181 34.997 35.353 -4.4509 67 22 4 0 0 0 0.32533 2 23610 23472;23610 25.997 8.1342 1 43121000 65305 5553 43472 44452 76223;76224 76224 0.01652764843629484 TPKEFREISY 10 Unmodified _TPKEFREISY_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8297119140625 2 635.327328 1268.6401 0.39962 0.00025389 1.4777 0.00093885 1.8774 0.0011927 635.8298262835509 39.673 0.43698 35.222 34.997 35.434 -4.4509 61 27 3 0 0 0 0.013442 1 23545 23545 82.445 58.655 1 8482700 65306 5553 43472 44452 76225 76225 0.01652764843629484 TPKIAKLNRKR 11 Unmodified _TPKIAKLNRKR_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.624755859375 3 442.289372 1323.84629 1.7101 0.00075636 0.31428 0.000139 2.0244 0.00089537 442.2893439166605 105.05 0.12177 98.876 98.789 98.911 -6.1757 30 11 3 0 0 0 0.74096 1 70303 70303 0.40827 0 1 72945000 65307 8437 43473 44453 76226 76226 0.19731802533397058 TPKKLANIKKP 11 Unmodified _TPKKLANIKKP_ 0 0 0 REV__ENSG00000138722|ENST00000264790|MMRN1 REV__ENSG00000138722|ENST00000264790|MMRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.4038696289062 2 619.403173 1236.79179 1.3643 0.00084502 0.53638 0.00033224 1.9006 0.0011773 619.4029397921037 105.85 1.1775 99.674 99.359 100.54 -6.1757 438 165 5 0 0 0 0.7326 3 70924 70924;71024;71127 1.1933 0 1 27090000 + 65308 20357 43474 44454 76227;76228;76229 76227 0.18286790661977648 TPKKLGNSL 9 Unmodified _TPKKLGNSL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2899780273438 2 479.290017 956.565481 -0.32243 -0.00015454 1.2215 0.00058545 0.89907 0.00043092 479.2903982740818 18.657 0.13013 18.657 18.599 18.729 0 21 13 2 0 0 0 0.38785 1 9286 9286 13.042 2.2185 1 728820 65309 4940 43475 44455 76230 76230 0.0854604682289164 TPKKLGNSL 9 Unmodified _TPKKLGNSL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.29150390625 2 479.290017 956.565481 1.2063 0.00057816 0.67807 0.00032499 1.8844 0.00090315 479.2903483342341 20.051 0.29335 17.394 17.22 17.514 -2.6564 41 17 4 0 0 0 0.011291 1 10612 10612 76.825 7.7199 1 9798300 65310 4940 43475 44455 76231 76231 0.0854604682289164 TPKKLGNSL 9 Unmodified _TPKKLGNSL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 479.290017 956.565481 -0.4437 -0.00021266 1.5681 0.00075156 1.1244 0.0005389 479.2906583936462 18.589 0.13381 18.612 18.535 18.668 0.023106 -0.022676 0.00019284 NaN 13.042 29 19 3 NaN NaN NaN NaN 0 NaN NaN 0 717900 65311 4940 43475 44455 0.0854604682289164 TPKKLNWLF 9 Unmodified _TPKKLNWLF_ 0 0 0 REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF REV__ENST00000417775.5_1_1:75190483-75198727:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8939514160156 3 382.893848 1145.65972 -0.072129 -2.7618E-05 1.4877 0.00056963 1.4156 0.00054201 382.89432728205804 32.947 0.25196 32.977 32.888 33.14 0.029743 18 10 2 0 0 0 0.48152 1 17306 17306 5.2969 1.1074 1 2364200 + 65312 26793 43476 44456 76232 76232 0.09271185645002333 TPKLKLWM 8 Unmodified _TPKLKLWM_ 0 0 0 ENSG00000148834|ENST00000369713|GSTO1;nc|ENSG00000148834|P78417-3|GSTO1;nc|ENSG00000148834|P78417-2|GSTO1 ENSG00000148834|ENST00000369713|GSTO1 ENSG00000148834|ENST00000369713|GSTO1 MSMS AL20221201_MKP_PDAC_01 4 508.8008728027344 2 508.801706 1015.58886 NaN NaN NaN NaN NaN NaN NaN 17.413 1 14.826 14.326 15.326 -2.5866 0 0 0 0.97444 1 9102 9102 2.5775 0 1 65313 5966 43477 44457 76233 76233 0.08168769335861725 TPKLLLIQN 9 Unmodified _TPKLLLIQN_ 0 0 0 REV__ENST00000344851.4_1_6:158659294-158663164:-|nuORF REV__ENST00000344851.4_1_6:158659294-158663164:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.3310546875 2 520.329142 1038.64373 NaN NaN NaN NaN NaN NaN NaN 105.17 1 98.995 98.495 99.495 -6.1757 0 0 0 0.83049 1 70451 70451 3.9444 0 1 + 65314 25749 43478 44458 76234 76234 0.12595479408150823 TPKLPLKMRLM 11 Unmodified _TPKLPLKMRLM_ 0 0 0 REV__ENSG00000141664|ENST00000269499|ZCCHC2 REV__ENSG00000141664|ENST00000269499|ZCCHC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.40283203125 2 664.401261 1326.78797 NaN NaN NaN NaN NaN NaN NaN 76.933 1 76.933 76.433 77.433 0 0 0 0 0.88164 1 42766 42766 8.1555 1.9497 1 + 65315 20550 43479 44459 76235 76235 0.13764661572258774 TPKNTSVSL 9 Unmodified _TPKNTSVSL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7603454589844 2 473.763832 945.513111 -0.41643 -0.00019729 0.26687 0.00012643 -0.14956 -7.0856E-05 473.7637853156345 26.949 0.27141 26.949 26.803 27.075 0 23 12 3 0 0 0 0.040683 1 13853 13853 49.554 5.696 1 2366700 65316 4852 43480 44460 76236 76236 0.03817463689279066 TPKNTSVSL 9 Unmodified _TPKNTSVSL_ 0 0 0 nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 nc|ENSG00000136758|Q96TA2-3|YME1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7637023925781 2 473.763832 945.513111 0.6122 0.00029004 -0.29854 -0.00014144 0.31366 0.0001486 473.7637480758744 30.087 0.28682 26.59 26.449 26.736 -3.497 17 13 2 0 0 0 0.020316 1 16962 16962 63.227 7.0505 1 16950000 65317 4852 43480 44460 76237 76237 0.03817463689279066 TPKQKKKKKKK 11 Unmodified _TPKQKKKKKKK_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;nc|ENSG00000167978|Q9UQ35-3|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.4715576171875 2 685.471921 1368.92929 NaN NaN NaN NaN NaN NaN NaN 1.2033 1 1.1827 0.68269 1.6827 -0.020623 0 0 0 0.9435 1 622 622 0 0 1 65318 7692 43481 44461 76238 76238 0.25958119261372303 TPKRRFGPP 9 Unmodified _TPKRRFGPP_ 0 0 0 REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.24365234375 2 528.309075 1054.6036 0.25416 0.00013427 1.7239 0.00091074 1.978 0.001045 528.3096451991977 70.742 0.31548 70.265 70.119 70.434 -0.47736 40 16 4 0 0 0 0.21367 1 38740 38740 4.756 0.42677 1 8699300 + 65319 26122 43482 44462 76239 76239 0.07847977528217598 TPKSSWFRRWA 11 Unmodified _TPKSSWFRRWA_ 0 0 0 REV__ENST00000468045.5_1_2:27355724-27356007:-|nuORF REV__ENST00000468045.5_1_2:27355724-27356007:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 711.3754272460938 2 711.375478 1420.7364 0.61972 0.00044086 -1.5415 -0.0010966 -0.92182 -0.00065576 711.8757953277087 75.341 0.34093 74.864 74.656 74.997 -0.47714 41 18 3 0 0 0 0.69316 1 41187 41187 4.897 1.9018 1 3160800 + 65320 27445 43483 44463 76240 76240 0.04286377194216584 TPKSSWFRRWA 11 Unmodified _TPKSSWFRRWA_ 0 0 0 REV__ENST00000468045.5_1_2:27355724-27356007:-|nuORF REV__ENST00000468045.5_1_2:27355724-27356007:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 711.375244140625 2 711.375478 1420.7364 0.93696 0.00066653 -0.72159 -0.00051332 0.21537 0.00015321 711.3749037711372 86.287 1.1002 80.111 79.615 80.715 -6.1757 154 59 3 0 0 0 0.30985 3 56801 56801;56925;57046 26.268 10.119 1 33754000 + 65321 27445 43483 44463 76241;76242;76243 76241 0.04286377194216584 TPLALPLDY 9 Unmodified _TPLALPLDY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7809753417969 2 501.778951 1001.54335 NaN NaN NaN NaN NaN NaN NaN 82.985 1 82.985 82.485 83.485 0 0 0 0 0.6557 1 46028 46028 10.824 6.4947 1 65322 8745 43484 44464 76244 76244 0.04263822354471358 TPLALPLDY 9 Unmodified _TPLALPLDY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1002.576904296875 1 1002.55062 1001.54335 0.41219 0.00041324 0.9834 0.0009859 1.3956 0.0013991 1002.5525572333488 83.471 0.28573 82.974 82.814 83.099 -0.49751 24 11 3 0 0 0 0.14 1 45631 45631 29.082 16.55 1 975710 65323 8745 43484 44464 76245 76245 0.04263822354471358 TPLALPLDY 9 Unmodified _TPLALPLDY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.77734375 2 501.778951 1001.54335 0.1965 9.8598E-05 0.051339 2.5761E-05 0.24784 0.00012436 501.77881606382175 83.475 0.31296 82.977 82.837 83.15 -0.49751 28 12 3 0 0 0 0.06187 1 45668 45668 42.095 27.513 1 1125300 65324 8745 43484 44464 76246 76246 0.04263822354471358 TPLALPLDY 9 Unmodified _TPLALPLDY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7785034179688 2 501.778951 1001.54335 NaN NaN NaN NaN NaN NaN NaN 83.627 1 83.129 82.629 83.629 -0.49751 0 0 0 0.82739 1 45772 45772 4.3292 2.0265 1 65325 8745 43484 44464 76247 76247 0.04263822354471358 TPLALPLDY 9 Unmodified _TPLALPLDY_ 0 0 0 ENSG00000178307|ENST00000317635|TMEM11;ENST00000584432.5_1_17:21101639-21114385:-|nuORF;ENST00000583264.1_1_17:21101639-21117457:-|nuORF ENSG00000178307|ENST00000317635|TMEM11 ENSG00000178307|ENST00000317635|TMEM11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7800903320312 2 501.778951 1001.54335 1.4387 0.00072191 2.1201 0.0010638 3.5588 0.0017857 501.7801407076288 90.796 0.54889 84.62 84.29 84.839 -6.1757 48 32 2 0 0 0 0.03568 2 59983 59853;59983 52.268 34.133 1 11806000 65326 8745 43484 44464 76248;76249 76249 0.04263822354471358 TPLASTSNSL 10 Unmodified _TPLASTSNSL_ 0 0 0 ENSG00000011426|ENST00000265748|ANLN;nc|ENSG00000011426|Q9NQW6-2|ANLN ENSG00000011426|ENST00000265748|ANLN ENSG00000011426|ENST00000265748|ANLN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.013427734375 2 495.758746 989.50294 0.8062 0.00039968 -1.1151 -0.00055284 -0.30893 -0.00015315 495.75726121057187 45.675 0.076283 40.72 40.669 40.745 -4.9549 7 4 2 0 0 0 0.14371 1 28095 28095 18.373 2.224 1 3937500 65327 447 43485 44465 76250 76250 0.007768559640339845 TPLATQLTY 9 Unmodified _TPLATQLTY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.274169921875 2 504.274032 1006.53351 1.0941 0.00055171 -0.010365 -5.2269E-06 1.0837 0.00054648 504.27402633697903 54.677 0.34621 54.677 54.484 54.83 0 40 14 4 0 0 0 0.010818 1 30376 30376 78.149 34.291 1 17303000 65328 5183 43486 44466 76251 76251 0.030506343490742438 TPLATQLTY 9 Unmodified _TPLATQLTY_ 0 0 0 ENSG00000139719|ENST00000267199|VPS33A;ENST00000544349.5_1_12:122734385-122734640:-|nuORF;ENST00000542790.1_1_12:122734385-122735751:-|nuORF ENSG00000139719|ENST00000267199|VPS33A ENSG00000139719|ENST00000267199|VPS33A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2747497558594 2 504.274032 1006.53351 -0.099627 -5.0239E-05 1.0404 0.00052467 0.94081 0.00047443 504.2745348427738 55.282 0.37832 54.804 54.607 54.986 -0.47798 42 17 3 0 0 0 0.015445 2 29923 29923;30023 68.081 25.986 1 21739000 65329 5183 43486 44466 76252;76253 76252 0.030506343490742438 TPLCAQGWLWQ 11 Unmodified _TPLCAQGWLWQ_ 0 0 0 REV__ENST00000394957.7_1_10:73510421-73510637:-|nuORF REV__ENST00000394957.7_1_10:73510421-73510637:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8823547363281 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 20.544 1 20.544 20.044 21.044 0 0 0 0 0.93969 1 10343 10343 1.1098 0.41209 1 + 65330 26462 43487 44467 76254 76254 -0.016068539630396117 TPLCLAPLC 9 Unmodified _TPLCLAPLC_ 0 0 0 REV__CON__Q497I4 REV__CON__Q497I4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.4827270507812 1 930.478722 929.471446 3.0795 0.0028654 1.8311 0.0017038 4.9106 0.0045692 930.4804135489661 97.11 0.67747 97.103 96.826 97.503 -0.007019 62 25 3 0 0 0 0.46577 1 54033 54033 9.3474 0 1 23123000 + + 65331 16881 43488 44468 76255 76255 0.0038886840474106066 TPLCLYVSG 9 Unmodified _TPLCLYVSG_ 0 0 0 REV__ENST00000426094.5_1_16:278330-278429:-|nuORF REV__ENST00000426094.5_1_16:278330-278429:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.7424621582031 2 476.744053 951.473554 NaN NaN NaN NaN NaN NaN NaN 61.576 1 55.401 54.901 55.901 -6.1757 0 0 0 0.15618 1 39673 39673 36.044 9.7029 1 + 65332 26903 43489 44469 76256 76256 -0.004123795857822188 TPLDAIAQF 9 Unmodified _TPLDAIAQF_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2610473632812 2 488.260925 974.507297 0.57967 0.00028303 -0.59369 -0.00028988 -0.014016 -6.8435E-06 488.26058358971153 67.279 0.32896 66.797 66.656 66.985 -0.48218 42 14 4 0 0 0 0.022193 1 36730 36730 61.357 6.5839 1 6196000 65333 7776;16369 43490 44470 76257 76257 0.01902365177613774 TPLDAIAQF 9 Unmodified _TPLDAIAQF_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2610168457031 2 488.260925 974.507297 -0.63682 -0.00031093 1.0268 0.00050135 0.38999 0.00019041 488.2613895432638 77.691 0.35934 77.208 77.032 77.391 -0.4826 40 16 3 0 0 0 0.042911 2 42575 42472;42575 48.346 12.302 1 4217400 65334 7776;16369 43490 44470 76258;76259 76259 0.01902365177613774 TPLDALYK 8 Unmodified _TPLDALYK_ 0 0 0 REV__ENSG00000111860|ENST00000368491|CEP85L REV__ENSG00000111860|ENST00000368491|CEP85L MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.5155639648438 1 920.50876 919.501483 0.61 0.00056151 0.98283 0.0009047 1.5928 0.0014662 920.5100243565748 69.511 0.43521 63.335 63.071 63.506 -6.1757 44 22 3 0 0 0 0.67481 1 45325 45325 19.439 1.304 1 51459000 + 65335 18773 43491 44471 76260 76260 0.038512666659471506 TPLDANQSAL 10 Unmodified _TPLDANQSAL_ 0 0 0 REV__nc|ENSG00000103449|Q9NSC2-2|SALL1 REV__nc|ENSG00000103449|Q9NSC2-2|SALL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.265869140625 2 515.264196 1028.51384 0.28243 0.00014553 2.196 0.0011315 2.4784 0.001277 515.2660697203115 55.261 0.31772 54.783 54.588 54.905 -0.47798 25 14 3 0 0 0 0.42143 1 29980 29980 20.415 2.2682 1 1842400 + 65336 18306 43492 44472 76261 76261 0.0007225833833217621 TPLDFLHIF 9 Unmodified _TPLDFLHIF_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8046875 2 551.800217 1101.58588 2.1688 0.0011968 -0.96443 -0.00053217 1.2044 0.00066458 551.7998611024052 100.1 0.11142 100.06 99.989 100.1 -0.036301 9 3 3 0 0 0 0.0031966 1 55597 55597 125.62 65.235 1 25893000 65337 3394 43493 44473 76262 76262 0.03915217482699518 TPLDLAALY 9 Unmodified _TPLDLAALY_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000064999|Q92625-2|ANKS1A;ENSG00000064999|ENST00000360359|ANKS1A nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7722778320312 2 488.771126 975.527698 0.65978 0.00032248 0.79135 0.00038679 1.4511 0.00070927 488.7713283314328 84.41 0.33218 83.91 83.666 83.998 -0.49961 27 14 3 0 0 0 0.30562 1 46140 46140 16.942 3.4344 1 635050 65338 9324 43494 44474 76263 76263 0.03895535837409625 TPLDLAALY 9 Unmodified _TPLDLAALY_ 0 0 0 nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B;nc|ENSG00000064999|Q92625-2|ANKS1A;ENSG00000064999|ENST00000360359|ANKS1A nc|ENSG00000185046|Q7Z6G8|ANKS1B nc|ENSG00000185046|Q7Z6G8|ANKS1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 976.5368041992188 1 976.534975 975.527698 0.41035 0.00040073 1.2948 0.0012645 1.7052 0.0016652 976.5361951612214 84.364 0.20249 83.864 83.753 83.955 -0.49961 12 8 2 0 0 0 0.026094 1 46162 46162 57.471 28.985 1 736330 65339 9324 43494 44474 76264 76264 0.03895535837409625 TPLDRLVAF 9 Unmodified _TPLDRLVAF_ 0 0 0 nc|ENSG00000182093|O00258-2|GET1;ENST00000490860.1_1_21:40764845-40768862:+|nuORF;ENSG00000182093|ENST00000649170|GET1 nc|ENSG00000182093|O00258-2|GET1 nc|ENSG00000182093|O00258-2|GET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.29833984375 2 516.297842 1030.58113 0.91328 0.00047152 2.9884 0.0015429 3.9017 0.0020144 516.2975013868032 71.513 0.48895 71.552 71.279 71.768 0.039024 59 22 5 0 0 0 0.053952 1 39431 39431 43.982 25.836 1 2923300 65340 9015 43495 44475 76265 76265 0.06706333339934645 TPLDRVTEF 9 Unmodified _TPLDRVTEF_ 0 0 0 ENSG00000163320|ENST00000482016|CGGBP1 ENSG00000163320|ENST00000482016|CGGBP1 ENSG00000163320|ENST00000482016|CGGBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.28125 2 539.282389 1076.55022 0.83083 0.00044805 0.47812 0.00025784 1.3089 0.00070589 539.2834333083204 51.354 0.22559 51.354 51.167 51.393 0 33 9 5 0 0 0 0.0099157 1 28337 28337 80.676 38.581 1 27039000 65341 6977 43496 44476 76266 76266 0.01501135235048423 TPLEADLK 8 Unmodified _TPLEADLK_ 0 0 0 nc|ENSG00000115255|Q96HR9|REEP6 nc|ENSG00000115255|Q96HR9|REEP6 nc|ENSG00000115255|Q96HR9|REEP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4946899414062 1 886.488024 885.480748 0.62191 0.00055131 -0.45162 -0.00040036 0.17028 0.00015095 886.4873390597958 54.143 0.27971 54.143 53.991 54.271 0 22 12 2 0 0 0 0.80676 1 29998 29998 2.5775 0 1 4423500 65342 16136 43497 44477 76267 76267 0.03342676286274582 TPLEEAIKF 9 Unmodified _TPLEEAIKF_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.289306640625 2 524.289682 1046.56481 0.40807 0.00021395 -1.3811 -0.00072412 -0.97307 -0.00051017 524.2888922652535 62.361 0.44391 62.361 62.189 62.633 0 77 29 3 0 0 0 0.0061223 3 34813 34712;34813;34924 114.2 59.012 1 74632000 65343 7146 43498 44478 76268;76269;76270 76269 0.04339207383191024 TPLEEAIKF 9 Unmodified _TPLEEAIKF_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2896118164062 2 524.289682 1046.56481 0.41974 0.00022007 -0.79862 -0.00041871 -0.37888 -0.00019864 524.2891674270172 62.826 0.62978 62.34 62.12 62.75 -0.48617 77 30 4 0 0 0 0.0061223 2 34180 34180;34284 114.2 55.523 1 66521000 65344 7146 43498 44478 76271;76272 76271 0.04339207383191024 TPLEEAIKF 9 Unmodified _TPLEEAIKF_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7918090820312 2 524.289682 1046.56481 0.7216 0.00037833 -0.58027 -0.00030423 0.14133 7.41E-05 524.2893955890862 68.137 1.087 61.962 61.618 62.705 -6.1757 143 63 3 0 0 0 0.0032147 5 44819 44275;44406;44534;44689;44819 125.53 66.85 1 233480000 65345 7146 43498 44478 76273;76274;76275;76276;76277 76277 0.04339207383191024 TPLEEAIKF 9 Unmodified _TPLEEAIKF_ 0 0 0 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 ENSG00000164134|ENST00000296543|NAA15 MSMS AL20221201_MKP_PDAC_01 4 524.2885131835938 2 524.289682 1046.56481 NaN NaN NaN NaN NaN NaN NaN 68.856 1 62.68 62.18 63.18 -6.1757 0 0 0 0.0098005 1 44952 44952 93.166 49.393 1 65346 7146 43498 44478 76278 76278 0.04339207383191024 TPLEERKL 8 Unmodified _TPLEERKL_ 0 0 0 ENST00000514414.1_1_4:74951996-74952332:-|nuORF ENST00000514414.1_1_4:74951996-74952332:-|nuORF ENST00000514414.1_1_4:74951996-74952332:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.8981323242188 2 493.287474 984.560395 -0.70393 -0.00034724 1.1017 0.00054344 0.39774 0.0001962 493.287921962308 30.253 0.18176 30.253 30.181 30.363 0 12 8 2 0 0 0 8.7369 1 15741 15741 10.824 0 1 828890 65347 14653 43499 44479 76279 76279 0.06749742960278127 TPLELLLRQL 10 Unmodified _TPLELLLRQL_ 0 0 0 ENSG00000156381|ENST00000286918|ANKRD9 ENSG00000156381|ENST00000286918|ANKRD9 ENSG00000156381|ENST00000286918|ANKRD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2508239746094 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 31.209 1 31.106 30.606 31.606 -0.10269 0 0 0 0.98857 1 16216 16216 1.9064 0.45126 1 65348 6451 43500 44480 76280 76280 0.14403109016711824 TPLEQGVSF 9 Unmodified _TPLEQGVSF_ 0 0 0 nc|ENSG00000213079|Q9UPN6-2|SCAF8;ENSG00000213079|ENST00000367178|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 nc|ENSG00000213079|Q9UPN6-2|SCAF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2499084472656 2 489.250557 976.486562 -0.52614 -0.00025742 -0.42088 -0.00020592 -0.94702 -0.00046333 489.2499803489385 55.754 0.3381 55.754 55.531 55.869 0 52 30 2 0 0 0 0.028475 1 30907 30907 56.177 25.541 1 9402500 65349 10419 43501 44481 76281 76281 -0.00262225202038735 TPLETPVGY 9 Unmodified _TPLETPVGY_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7519226074219 2 488.752933 975.491313 0.59815 0.00029235 -1.0023 -0.00048987 -0.40413 -0.00019752 488.7523893686719 50.933 0.17072 50.933 50.843 51.014 0 15 8 2 0 0 0 0.023164 1 28105 28105 60.39 34.048 1 2062000 65350 3233 43502 44482 76282 76282 0.0025865894070875584 TPLFSLSGN 9 Unmodified _TPLFSLSGN_ 0 0 0 REV__ENSG00000182492|ENST00000331595|BGN REV__ENSG00000182492|ENST00000331595|BGN MSMS AL20221201_MKP_PDAC_01 4 468.2464294433594 2 468.245275 934.475997 NaN NaN NaN NaN NaN NaN NaN 100.41 1 94.233 93.733 94.733 -6.1757 0 0 0 0.08978 1 67134 67134 46.021 19.137 1 + 65351 16747 43503 44483 76283 76283 0.006137921435311 TPLFVAAQY 9 Unmodified _TPLFVAAQY_ 0 0 0 nc|ENSG00000115239|Q9Y575-2|ASB3;ENSG00000115239|ENST00000263634|ASB3;nc|ENSG00000115239|Q9Y575-3|ASB3 nc|ENSG00000115239|Q9Y575-2|ASB3 nc|ENSG00000115239|Q9Y575-2|ASB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2718505859375 2 505.271293 1008.52803 0.14979 7.5685E-05 1.1123 0.00056203 1.2621 0.00063772 505.2718722304134 67.667 0.31538 67.185 67.031 67.346 -0.48218 20 13 2 0 0 0 0.14602 1 36982 36982 28.487 15.955 1 1108800 65352 3101 43504 44484 76284 76284 0.02410955557274974 TPLGGEIMF 9 Oxidation (M) _TPLGGEIM(Oxidation (M))F_ TPLGGEIM(1)F TPLGGEIM(57)F 0 0 1 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.741455078125 2 490.741511 979.468469 0.29099 0.0001428 -0.766 -0.00037591 -0.475 -0.0002331 490.7411598143549 69.142 0.54041 69.142 68.786 69.326 0 63 23 3 0 0 0 0.026094 3 38484 38382;38484;38582 57.471 28.985 1 5756300 65353 2082 43505 44485 76285;76286;76287 76286 357 -0.022086834484071005 TPLGGEIMF 9 Oxidation (M) _TPLGGEIM(Oxidation (M))F_ TPLGGEIM(1)F TPLGGEIM(55)F 0 0 1 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.4745483398438 1 980.475745 979.468469 0.19524 0.00019142 -0.65158 -0.00063886 -0.45635 -0.00044744 980.4754979624106 69.059 0.51826 69.059 68.786 69.304 0 51 22 3 0 0 0 0.031062 2 38481 38481;38580 54.774 26.287 1 2392300 65354 2082 43505 44485 76288;76289 76288 357 -0.022086834484071005 TPLGGEIMF 9 Oxidation (M) _TPLGGEIM(Oxidation (M))F_ TPLGGEIM(1)F TPLGGEIM(67)F 0 0 1 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7410888671875 2 490.741511 979.468469 0.07174 3.5206E-05 0.41852 0.00020539 0.49026 0.00024059 490.74145111985257 69.658 0.5944 69.179 68.829 69.424 -0.47903 70 25 4 0 0 0 0.016184 2 38066 37970;38066 67.344 38.857 1 2843000 65355 2082 43505 44485 76290;76291 76291 357 -0.022086834484071005 TPLGGEIMF 9 Oxidation (M) _TPLGGEIM(Oxidation (M))F_ TPLGGEIM(1)F TPLGGEIM(42)F 0 0 1 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.4745483398438 1 980.475745 979.468469 -0.17543 -0.000172 0.57662 0.00056536 0.40119 0.00039336 980.4761638234734 69.519 0.43909 69.04 68.851 69.29 -0.47903 34 18 2 0 0 0 0.06187 1 38037 38037 42.095 16.695 1 1786000 65356 2082 43505 44485 76292 76292 357 -0.022086834484071005 TPLGGEIMF 9 Unmodified _TPLGGEIMF_ 0 0 0 ENSG00000102910|ENST00000285737|LONP2;nc|ENSG00000102910|Q86WA8-2|LONP2 ENSG00000102910|ENST00000285737|LONP2 ENSG00000102910|ENST00000285737|LONP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.4813842773438 1 964.480831 963.473554 1.1006 0.0010615 0.22769 0.0002196 1.3283 0.0012811 964.480964115378 86.71 0.37703 80.535 80.322 80.699 -6.1757 28 19 2 0 0 0 0.0082281 2 57057 57057;57182 96.285 56.695 1 10247000 65357 2082 43505 44486 76293;76294 76293 -0.009643795857982695 TPLGQAFL 8 Unmodified _TPLGQAFL_ 0 0 0 REV__ENSG00000167721|ENST00000301364|TSR1 REV__ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7409057617188 2 423.739628 845.464704 1.1266 0.00047736 2.4406 0.0010342 3.5671 0.0015115 423.74077300472885 39.364 0.32507 34.913 34.766 35.091 -4.4509 31 19 2 0 0 0 0.61462 1 23310 23310 24.674 2.9272 1 10697000 + 65358 22249 43506 44487 76295 76295 0.0357901484002241 TPLHFAAGY 9 Unmodified _TPLHFAAGY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7474975585938 2 488.747985 975.481417 0.75683 0.0003699 -0.080904 -3.9542E-05 0.67593 0.00033036 488.74777888000915 47.745 0.27283 47.393 47.223 47.496 -0.3526 27 12 3 0 0 0 0.0086179 1 25565 25565 89.427 51.276 1 7272500 65359 8309;2522 43507 44488 76296 76296 -0.007304842740154527 TPLHHTWTY 9 Unmodified _TPLHHTWTY_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;ENST00000556534.1_1_14:31109012-31122803:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8580627441406 3 385.857574 1154.55089 -0.054281 -2.0945E-05 0.57501 0.00022187 0.52072 0.00020093 385.85761098014274 32.209 0.30971 32.08 31.866 32.176 -0.12915 22 11 3 0 0 0 0.43515 1 16761 16761 10.8 4.5937 1 1323200 65360 1606 43508 44489 76297 76297 -0.020200253252369293 TPLHHTWTY 9 Unmodified _TPLHHTWTY_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF;ENST00000556534.1_1_14:31109012-31122803:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 385.857574 1154.55089 -0.25596 -9.8762E-05 1.7784 0.00068623 1.5225 0.00058746 385.8578129374459 32.067 0.16273 32.097 31.988 32.151 0.029743 0.0084232 0.0011502 NaN 10.8 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1017100 65361 1606 43508 44489 -0.020200253252369293 TPLHLAAGY 9 Unmodified _TPLHLAAGY_ 0 0 0 ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7563171386719 2 471.75581 941.497067 0.92873 0.00043813 -0.094819 -4.4731E-05 0.83391 0.0003934 471.7557606658951 49.748 0.35995 44.209 44.017 44.377 -5.5391 41 22 2 0 0 0 0.0025195 2 31166 31032;31166 129.2 84.793 1 39211000 65362 8309;2522 43509 44490 76298;76299 76299 0.023978022430242163 TPLHLEGLVQF 11 Unmodified _TPLHLEGLVQF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3490600585938 2 627.348063 1252.68157 0.78956 0.00049533 0.782 0.00049059 1.5716 0.00098592 627.348648125612 79.955 0.26302 79.465 79.377 79.64 -0.48932 22 9 3 0 0 0 0.13715 1 43817 43817 38.176 22.026 1 1364800 65363 7756 43510 44491 76300 76300 0.06533945602927815 TPLHLEGLVQF 11 Unmodified _TPLHLEGLVQF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.3489379882812 2 627.348063 1252.68157 0.40532 0.00025428 0.5255 0.00032967 0.93082 0.00058395 627.3483239738016 79.346 0.29251 79.401 79.284 79.577 0.054977 24 10 3 0 0 0 0.00013798 1 43840 43840 92.653 69.917 1 5748900 65364 7756 43510 44491 76301 76301 0.06533945602927815 TPLHLEGLVQF 11 Unmodified _TPLHLEGLVQF_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3491821289062 2 627.348063 1252.68157 1.1325 0.00071048 0.62963 0.000395 1.7621 0.0011055 627.3482169550649 96.486 0.26791 90.31 90.185 90.453 -6.1757 36 15 3 0 0 0 0.00043628 2 63903 63903;64032 89.401 45.542 1 72691000 65365 7756 43510 44491 76302;76303 76302 0.06533945602927815 TPLHLVALY 9 Unmodified _TPLHLVALY_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.8026123046875 2 513.80276 1025.59097 0.29436 0.00015124 0.33011 0.00016961 0.62447 0.00032085 513.8027300630724 68.632 0.31837 68.151 67.99 68.309 -0.48071 38 14 4 0 0 0 0.23158 1 37574 37574 20.454 9.6297 1 8396900 65366 9403 43511 44492 76304 76304 0.0791952134532039 TPLHLVALY 9 Unmodified _TPLHLVALY_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8029174804688 2 513.80276 1025.59097 0.64898 0.00033345 -0.50163 -0.00025774 0.14735 7.5709E-05 513.8025251324004 68.113 0.37465 68.138 67.963 68.337 0.025146 34 18 2 0 0 0 0.023164 2 37457 37355;37457 60.39 30.165 1 37548000 65367 9403 43511 44492 76305;76306 76306 0.0791952134532039 TPLHLVALY 9 Unmodified _TPLHLVALY_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ENST00000570934.5_1_17:4098183-4145738:-|nuORF ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.80322265625 2 513.80276 1025.59097 0.99157 0.00050947 0.18107 9.3036E-05 1.1726 0.00060251 513.8031149764964 86.055 0.77029 79.88 79.495 80.266 -6.1757 109 42 4 0 0 0 0.016184 3 56764 56636;56764;56903 67.344 31.13 1 24194000 65368 9403 43511 44492 76307;76308;76309 76308 0.0791952134532039 TPLHMAIAY 9 Oxidation (M) _TPLHM(Oxidation (M))AIAY_ TPLHM(1)AIAY TPLHM(67)AIAY 0 0 1 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.763671875 2 516.762778 1031.511 0.3001 0.00015508 0.905 0.00046767 1.2051 0.00062275 516.7634558579557 38 0.30163 38 37.806 38.108 0 38 14 4 0 0 0 0.016184 1 20255 20255 67.344 37.119 1 9523400 65369 9403 43512 44493 76310 76310 1547 -0.0034928832019431866 TPLHMAIAY 9 Oxidation (M) _TPLHM(Oxidation (M))AIAY_ TPLHM(1)AIAY TPLHM(78)AIAY 0 0 1 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7645874023438 2 516.762778 1031.511 -0.056381 -2.9135E-05 1.0916 0.0005641 1.0352 0.00053496 516.7635093272319 38.335 0.30814 38.048 37.866 38.174 -0.28687 50 13 5 0 0 0 0.010877 2 20135 20135;20231 77.984 59.849 1 23897000 65370 9403 43512 44493 76311;76312 76311 1547 -0.0034928832019431866 TPLHMAIAY 9 Oxidation (M) _TPLHM(Oxidation (M))AIAY_ TPLHM(1)AIAY TPLHM(67)AIAY 0 0 1 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7623901367188 2 516.762778 1031.511 -0.071095 -3.6739E-05 -0.49912 -0.00025793 -0.57022 -0.00029467 516.7625218295212 38.662 0.38896 38.375 38.196 38.585 -0.28687 48 18 3 0 0 0 0.016184 1 20339 20339 67.344 50.402 1 27278000 65371 9403 43512 44493 76313 76313 1547 -0.0034928832019431866 TPLHMAIAY 9 Oxidation (M) _TPLHM(Oxidation (M))AIAY_ TPLHM(1)AIAY TPLHM(57)AIAY 0 0 1 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.761474609375 2 516.762778 1031.511 0.68043 0.00035162 -0.72924 -0.00037684 -0.048808 -2.5222E-05 516.7623955434864 43.561 0.40095 38.796 38.618 39.019 -4.7648 72 24 4 0 0 0 0.026094 2 26405 26405;26539 57.471 39.336 1 47752000 65372 9403 43512 44493 76314;76315 76314 1547 -0.0034928832019431866 TPLHMAIAY 9 Unmodified _TPLHMAIAY_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7645568847656 2 508.76532 1015.51609 0.79672 0.00040534 -0.26696 -0.00013582 0.52975 0.00026952 508.76512609988544 59.888 0.38959 53.774 53.496 53.886 -6.1147 68 22 4 0 0 0 0.023164 2 38377 38377;38515 60.39 37.241 1 169430000 65373 9403 43512 44494 76316;76317 76316 0.00895015542425881 TPLHMAIAY 9 Unmodified _TPLHMAIAY_ 0 0 0 ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 ENSG00000185722|ENST00000341657|ANKFY1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 508.76532 1015.51609 -0.10902 -5.5467E-05 -1.0389 -0.00052854 -1.1479 -0.00058401 508.7649690140954 54.284 0.215 53.818 53.667 53.882 -0.46664 0.022008 -0.00049541 NaN 60.39 28 10 4 NaN NaN NaN NaN 0 NaN NaN 0 8709800 65374 9403 43512 44494 0.00895015542425881 TPLHPACL 8 Unmodified _TPLHPACL_ 0 0 0 ENST00000574999.1_1_17:3828674-3831769:-|nuORF;ENST00000571245.5_1_17:3831457-3831952:-|nuORF ENST00000574999.1_1_17:3828674-3831769:-|nuORF ENST00000574999.1_1_17:3828674-3831769:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 425.8921813964844 2 426.225831 850.437109 NaN NaN NaN NaN NaN NaN NaN 61.72 1 55.545 55.045 56.045 -6.1757 0 0 0 0.93066 1 39773 39773 14.582 0 1 65375 15484 43513 44495 76318 76318 0.005907883081363252 TPLIADVY 8 Unmodified _TPLIADVY_ 0 0 0 nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA nc|ENSG00000138744|Q02083-2|NAAA nc|ENSG00000138744|Q02083-2|NAAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.4819946289062 1 891.482211 890.474934 -0.013242 -1.1805E-05 0.31067 0.00027696 0.29743 0.00026515 891.4823123274887 64.773 0.25103 64.773 64.65 64.901 0 18 10 2 0 0 0 0.24071 2 36090 36090;36195 63.563 29.376 1 996350 65376 5095 43514 44496 76319;76320 76319 0.02531577774618654 TPLIHRCN 8 Unmodified _TPLIHRCN_ 0 0 0 nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX nc|ENSG00000107290|Q7Z333-3|SETX nc|ENSG00000107290|Q7Z333-3|SETX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 953.49951171875 1 953.498546 952.49127 0.28228 0.00026915 -0.13898 -0.00013252 0.1433 0.00013663 953.4986419728897 97.028 0.28041 96.723 96.586 96.867 -0.30472 25 14 2 0 0 0 0.78849 1 53058 53058 9.3474 0 1 900240 65377 2488 43515 44497 76321 76321 0.013123804597171329 TPLIWKPFH 9 Unmodified _TPLIWKPFH_ 0 0 0 REV__ENST00000534797.5_1_11:502881-503247:-|nuORF REV__ENST00000534797.5_1_11:502881-503247:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2189636230469 3 380.218443 1137.6335 1.5713 0.00059744 0.013029 4.9538E-06 1.5843 0.00060239 380.2182295260978 91.727 0.31517 85.551 85.371 85.686 -6.1757 35 17 3 0 0 0 0.53557 1 60587 60587 5.2969 0.76802 1 18469000 + 65378 28510 43516 44498 76322 76322 0.07018916473543868 TPLKEALEAY 10 Unmodified _TPLKEALEAY_ 0 0 0 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8062133789062 2 567.805697 1133.59684 0.46058 0.00026152 1.3162 0.00074732 1.7767 0.0010088 567.8063022755418 48.927 0.34509 48.555 48.369 48.714 -0.37172 25 17 2 0 0 0 0.078742 1 26301 26301 51.415 23.786 1 19699000 65379 5908 43517 44499 76323 76323 0.035385750663408544 TPLKEALEAY 10 Unmodified _TPLKEALEAY_ 0 0 0 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 ENSG00000148229|ENST00000374171|POLE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8060913085938 2 567.805697 1133.59684 0.86231 0.00048963 0.69521 0.00039474 1.5575 0.00088437 567.8058365054603 54.615 0.45867 48.75 48.5 48.959 -5.8653 59 28 3 0 0 0 0.024351 2 34724 34592;34724 71.708 37.306 1 159520000 65380 5908 43517 44499 76324;76325 76325 0.035385750663408544 TPLKNADLF 9 Unmodified _TPLKNADLF_ 0 0 0 REV__ENSG00000085274|ENST00000349841|MYNN REV__ENSG00000085274|ENST00000349841|MYNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2762145996094 2 509.782025 1017.5495 0.22686 0.00011565 -1.4933 -0.00076126 -1.2664 -0.00064561 509.78125915848824 61.93 0.16315 61.443 61.407 61.57 -0.48764 9 7 2 0 0 0 0.38785 1 33739 33739 13.042 0 1 980080 + 65381 17746 43518 44500 76326 76326 0.04142340585997317 TPLLAETSLK 10 Unmodified _TPLLAETSLK_ 0 0 0 REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF REV__ENST00000361690.7_1_6:35856682-35888302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2149353027344 3 358.213135 1071.61758 0.84466 0.00030257 1.5921 0.00057032 2.4368 0.00087289 358.5473280448633 15.002 0.50439 12.475 12.17 12.674 -2.5273 225 84 4 0 0 0 0.46077 1 7649 7649 12.228 1.3286 1 8993300 + 65382 25933 43519 44501 76327 76327 0.08463165446005405 TPLLCLVSY 9 Carbamidomethyl (C) _TPLLC(Carbamidomethyl (C))LVSY_ TPLLC(1)LVSY TPLLC(85)LVSY 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2864990234375 2 533.286085 1064.55762 0.4344 0.00023166 -0.55201 -0.00029438 -0.11761 -6.2719E-05 533.2862477593378 86.27 0.72237 85.767 85.393 86.115 -0.50318 100 29 6 0 0 0 0.0090851 2 47235 47141;47235 85.357 53.24 1 9294700 65383 5884 43520 44502 76328;76329 76329 597 0.02792151511107477 TPLLCLVSY 9 Carbamidomethyl (C) _TPLLC(Carbamidomethyl (C))LVSY_ TPLLC(1)LVSY TPLLC(93)LVSY 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2863159179688 2 533.286085 1064.55762 -0.23705 -0.00012641 0.43201 0.00023038 0.19496 0.00010397 533.2862268234775 85.722 0.3596 85.784 85.595 85.955 0.061646 32 13 3 0 0 0 0.0082281 2 47427 47427;47534 92.822 60.705 1 79039000 65384 5884 43520 44502 76330;76331 76330 597 0.02792151511107477 TPLLCLVSY 9 Carbamidomethyl (C) _TPLLC(Carbamidomethyl (C))LVSY_ TPLLC(1)LVSY TPLLC(74)LVSY 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.2868041992188 2 533.286085 1064.55762 1.2688 0.00067662 -0.30352 -0.00016186 0.96525 0.00051475 533.7874213422576 95.838 1.3122 89.662 88.891 90.203 -6.1757 229 78 4 0 0 0 0.012148 5 63200 63200;63330;63456;63578;63705 74.423 42.306 1 187540000 65385 5884 43520 44502 76332;76333;76334;76335;76336 76332 597 0.02792151511107477 TPLLCLVSY 9 Carbamidomethyl (C) _TPLLC(Carbamidomethyl (C))LVSY_ TPLLC(1)LVSY TPLLC(110)LVSY 0 1 0 nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT;nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000480946.6_1_8:144659238-144660323:-|nuORF nc|ENSG00000147813|Q6XQN6-3|NAPRT nc|ENSG00000147813|Q6XQN6-3|NAPRT MULTI-MSMS AL20221201_MKP_PDAC_01 4 1065.566528320312 1 1065.56489 1064.55762 1.1507 0.0012261 0.0018955 2.0198E-06 1.1525 0.0012281 1065.5644117894892 95.87 0.7426 89.694 89.264 90.007 -6.1757 83 45 3 0 0 0 0.0071894 1 63337 63337 111.29 71.33 1 19311000 65386 5884 43520 44502 76337 76337 597 0.02792151511107477 TPLLFALLLLL 11 Unmodified _TPLLFALLLLL_ 0 0 0 REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF REV__ENST00000552252.1_1_14:25044469-25045450:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8696899414062 3 409.608937 1225.80498 0.092834 3.8025E-05 -1.4955 -0.00061257 -1.4027 -0.00057454 409.60825817599505 60.78 0.25113 60.737 60.594 60.845 -0.04351 26 12 3 0 0 0 0.30145 1 33214 33214 7.0371 0 1 3759500 + 65387 18068 43521 44503 76338 76338 0.20111228721384578 TPLLHQIEL 9 Unmodified _TPLLHQIEL_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3103637695312 2 532.310949 1062.60735 0.31028 0.00016517 -0.13159 -7.0047E-05 0.17869 9.5119E-05 532.3108659432918 64.034 0.21474 64.034 63.953 64.168 0 14 8 2 0 0 0 0.5029 1 35752 35752 7.2892 0 1 613180 65388 6702 43522 44504 76339 76339 0.07854602511406483 TPLLHQIEL 9 Unmodified _TPLLHQIEL_ 0 0 0 ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD;nc|ENSG00000160211|P11413-2|G6PD;ENST00000490651.1_1_X:153760401-153761015:-|nuORF ENSG00000160211|ENST00000393562|G6PD ENSG00000160211|ENST00000393562|G6PD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.31103515625 2 532.310949 1062.60735 0.57583 0.00030652 0.62287 0.00033156 1.1987 0.00063808 532.3113845952839 64.431 0.36856 63.946 63.779 64.147 -0.48512 36 16 3 0 0 0 0.078314 1 35121 35121 38.176 17.722 1 4216300 65389 6702 43522 44504 76340 76340 0.07854602511406483 TPLLLFTQF 9 Unmodified _TPLLLFTQF_ 0 0 0 nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128 nc|ENSG00000132406|Q5BJH2-2|TMEM128 nc|ENSG00000132406|Q5BJH2-2|TMEM128 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3140258789062 2 540.310418 1078.60628 0.2899 0.00015663 3.2954 0.0017805 3.5853 0.0019372 540.3120393087491 100.87 0.10243 100.83 100.76 100.87 -0.04216 9 3 3 0 0 0 0.016184 1 56040 56040 67.344 42.67 1 15398000 65390 4403 43523 44505 76341 76341 0.07012388142516102 TPLLPRRA 8 Unmodified _TPLLPRRA_ 0 0 0 REV__ENST00000467302.5_1_1:109234995-109235238:+|nuORF REV__ENST00000467302.5_1_1:109234995-109235238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2919921875 2 462.292894 922.571235 1.5717 0.00072658 -1.3942 -0.00064454 0.17746 8.2039E-05 462.2920419990048 103.64 0.17896 97.466 97.37 97.549 -6.1757 50 38 2 0 0 0 0.80992 1 69467 69467 0.69038 0 1 6673800 + 65391 27428 43524 44506 76342 76342 0.10685190125218469 TPLLYLFFL 9 Unmodified _TPLLYLFFL_ 0 0 0 REV__ENST00000454928.5_2_2:110705383-110742349:+|nuORF REV__ENST00000454928.5_2_2:110705383-110742349:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.196044921875 3 376.223083 1125.64742 1.1208 0.00042168 0.26736 0.00010059 1.3882 0.00052227 376.2233886754639 46.09 0.25636 41.135 40.999 41.255 -4.9549 23 16 2 0 0 0 0.21302 1 28371 28371 5.7319 0 1 10583000 + 65392 27238 43525 44507 76343 76343 0.08962149182002577 TPLNLKHHI 9 Unmodified _TPLNLKHHI_ 0 0 0 nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000099715|Q9BZA8|PCDH11Y nc|ENSG00000099715|Q9BZA8-3|PCDH11Y nc|ENSG00000099715|Q9BZA8-3|PCDH11Y MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5473327636719 3 358.213581 1071.61891 0.84466 0.00030257 0.34761 0.00012452 1.1923 0.00042709 358.5473280448633 15.002 0.50439 12.475 12.17 12.674 -2.5273 225 84 4 0 0 0 0.5029 1 7618 7618 7.609 1.8255 1 8993300 65393 1702 43526 44508 76344 76344 0.08596844325415987 TPLNQLLML 9 Unmodified _TPLNQLLML_ 0 0 0 REV__ENSG00000065491|ENST00000373491|TBC1D22B REV__ENSG00000065491|ENST00000373491|TBC1D22B MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8011474609375 2 521.801903 1041.58925 0.93989 0.00049043 2.6874 0.0014023 3.6272 0.0018927 521.8016264146934 70.113 0.53754 63.937 63.648 64.186 -6.1757 70 30 4 0 0 0 0.19127 1 45815 45815 24.021 3.1494 1 44227000 + 65394 17378 43527 44509 76345 76345 0.0701214426505885 TPLNWFNL 8 Unmodified _TPLNWFNL_ 0 0 0 REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7632446289062 2 502.763635 1003.51272 -0.028579 -1.4368E-05 -1.2679 -0.00063748 -1.2965 -0.00065185 502.7631359810745 30.821 0.38174 30.821 30.65 31.031 0 51 18 4 0 0 0 0.34916 1 16008 16008 49.933 0.40575 1 28629000 + 65395 22516 43528 44510 76346 76346 0.01110088760083272 TPLNWFNL 8 Unmodified _TPLNWFNL_ 0 0 0 REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7643737792969 2 502.763635 1003.51272 0.046878 2.3568E-05 -0.39959 -0.0002009 -0.35271 -0.00017733 502.76365204611363 30.806 0.31639 30.703 30.548 30.864 -0.10269 36 12 4 0 0 0 0.21098 2 15963 15963;16065 68.081 1.9859 1 20371000 + 65396 22516 43528 44510 76347;76348 76347 0.01110088760083272 TPLNWFNL 8 Unmodified _TPLNWFNL_ 0 0 0 REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7637329101562 2 502.763635 1003.51272 1.0011 0.00050333 -1.0607 -0.00053326 -0.059539 -2.9934E-05 502.763329059301 34.835 0.58493 30.74 30.438 31.023 -4.0951 103 34 4 0 0 0 0.32798 1 20021 20021 52.268 6.5285 1 116310000 + 65397 22516 43528 44510 76349 76349 0.01110088760083272 TPLNWFNL 8 Unmodified _TPLNWFNL_ 0 0 0 REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 502.763635 1003.51272 -0.028579 -1.4368E-05 -1.2679 -0.00063748 -1.2965 -0.00065185 502.7631359810745 30.821 0.38174 30.821 30.65 31.031 0 0.058737 -0.00044729 NaN 68.081 51 18 4 NaN NaN NaN NaN 0 NaN NaN 0 28629000 + 65398 22516 43528 44510 0.01110088760083272 TPLNWFNL 8 Unmodified _TPLNWFNL_ 0 0 0 REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF REV__ENST00000599245.1_1_19:43528837-43530575:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.763635 1003.51272 0.046878 2.3568E-05 -0.39959 -0.0002009 -0.35271 -0.00017733 502.76365204611363 30.806 0.31639 30.703 30.548 30.864 -0.10269 -0.058737 0.00042586 NaN 68.081 36 12 4 NaN NaN NaN NaN 0 NaN NaN 0 20371000 + 65399 22516 43528 44510 0.01110088760083272 TPLPAVIVL 9 Unmodified _TPLPAVIVL_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.5961303710938 1 922.597181 921.589904 1.0622 0.00097996 -0.20589 -0.00018996 0.85629 0.00079001 922.5966764000511 100.38 0.16948 94.207 94.122 94.291 -6.1757 27 10 3 0 0 0 0.0086179 1 67078 67078 89.427 0 1 89050000 65400 6085 43529 44511 76350 76350 0.12597306976408618 TPLPAVIVL 9 Unmodified _TPLPAVIVL_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.8025817871094 2 461.802229 921.589904 1.1498 0.00053099 -0.067656 -3.1244E-05 1.0822 0.00049974 461.8020627435279 100.39 0.19019 94.215 94.122 94.312 -6.1757 29 11 3 0 0 0 0.0090851 1 67084 67084 85.357 6.912 1 103520000 65401 6085 43529 44511 76351 76351 0.12597306976408618 TPLPDELNF 9 Unmodified _TPLPDELNF_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2631225585938 2 523.263665 1044.51278 0.71164 0.00037238 -0.12883 -6.7414E-05 0.58281 0.00030496 523.2634059724036 74.328 0.39119 74.328 74.081 74.472 0 39 18 3 0 0 0 0.32871 2 41394 41289;41394 15.847 3.5347 1 1348700 65402 1865 43530 44512 76352;76353 76353 -0.0076995603058094275 TPLPDELNF 9 Unmodified _TPLPDELNF_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.263665 1044.51278 0.62704 0.0003281 -0.25657 -0.00013425 0.37047 0.00019385 523.2637972248856 74.805 0.24368 74.329 74.133 74.376 -0.47588 0.0006831 -9.0564E-05 NaN 15.847 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 416690 65403 1865 43530 44512 -0.0076995603058094275 TPLPEDNSM 9 Oxidation (M) _TPLPEDNSM(Oxidation (M))_ TPLPEDNSM(1) TPLPEDNSM(68) 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2213134765625 2 510.221139 1018.42773 -0.21364 -0.000109 0.2047 0.00010444 -0.0089325 -4.5575E-06 510.22144553161206 25.622 0.45339 25.622 25.366 25.819 0 46 21 3 0 0 0 0.015445 1 13167 13167 68.081 22.06 1 2311300 65404 10766 43531 44513 76354 76354 1725 -0.08075069558685755 TPLPEDNSM 9 Oxidation (M) _TPLPEDNSM(Oxidation (M))_ TPLPEDNSM(1) TPLPEDNSM(100) 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2212219238281 2 510.221139 1018.42773 0.74981 0.00038257 0.19972 0.0001019 0.94953 0.00048447 510.22120104634666 30.356 0.27365 26.859 26.718 26.992 -3.497 19 13 2 0 0 0 0.0088174 1 17151 17151 103.75 48.975 1 11777000 65405 10766 43531 44513 76355 76355 1725 -0.08075069558685755 TPLPEDNSM 9 Unmodified _TPLPEDNSM_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2240905761719 2 502.223682 1002.43281 0.6255 0.00031414 0.20073 0.00010081 0.82623 0.00041495 502.223631632697 44 0.33141 39.235 39.05 39.381 -4.7648 42 21 3 0 0 0 0.0090948 2 26722 26722;26879 85.272 52.967 1 14616000 65406 10766 43531 44514 76356;76357 76356 -0.06830765696065555 TPLPEEFEL 9 Unmodified _TPLPEEFEL_ 0 0 0 nc|ENSG00000116698|Q92540-4|SMG7;nc|ENSG00000116698|Q92540-2|SMG7;nc|ENSG00000116698|Q92540|SMG7;ENSG00000116698|ENST00000688051|SMG7;nc|ENSG00000116698|Q92540-5|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 nc|ENSG00000116698|Q92540-4|SMG7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7711791992188 2 537.771322 1073.52809 0.25846 0.00013899 0.48112 0.00025873 0.73959 0.00039773 537.7716446732746 79.581 0.40347 79.581 79.372 79.775 0 39 16 3 0 0 0 0.34134 1 44158 44158 21.747 4.8044 1 1339300 65407 16141 43532 44515 76358 76358 -0.005730892333758675 TPLPHSLASI 10 Unmodified _TPLPHSLASI_ 0 0 0 REV__ENST00000357325.9_1_1:156711975-156712116:-|nuORF REV__ENST00000357325.9_1_1:156711975-156712116:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7573852539062 2 518.295299 1034.57605 0.34887 0.00018082 -4.4778 -0.0023208 -4.129 -0.00214 518.7922127773127 61.501 0.38594 61.501 61.321 61.707 0 41 17 3 0 0 0 0.23325 1 34248 34248 3.2813 0 1 2024100 + 65408 25849 43533 44516 76359 76359 0.06014029477319127 TPLPLIKPY 9 Unmodified _TPLPLIKPY_ 0 0 0 ENSG00000273841|ENST00000217893|TAF9;ENSG00000187325|ENST00000341864|TAF9B ENSG00000273841|ENST00000217893|TAF9 ENSG00000273841|ENST00000217893|TAF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.322509765625 2 521.320786 1040.62702 0.25258 0.00013167 1.2475 0.00065037 1.5001 0.00078205 521.3215028777432 63.081 0.25523 63.06 62.927 63.182 -0.021614 32 12 3 0 0 0 0.024882 1 34488 34488 58.679 24.576 1 6956800 65409 10897 43534 44517 76360 76360 0.10832978522171288 TPLPPPYNL 9 Unmodified _TPLPPPYNL_ 0 0 0 ENSG00000215148|ENST00000399677|PRSS41;nc|ENSG00000215148|Q7RTY9|PRSS41 ENSG00000215148|ENST00000399677|PRSS41 ENSG00000215148|ENST00000399677|PRSS41 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7566223144531 2 506.279118 1010.54368 0.43103 0.00021822 -1.3158 -0.00066615 -0.88476 -0.00044793 506.7799017524554 50.341 0.17532 50.341 50.236 50.411 0 11 7 2 0 0 0 0.20727 1 27705 27705 7.9102 0.62092 1 1185600 65410 10522 43535 44518 76361 76361 0.038832420743119656 TPLPSLPGY 9 Unmodified _TPLPSLPGY_ 0 0 0 ENSG00000149243|ENST00000539798|KLHL35;ENST00000460787.1_1_11:75137492-75141101:-|nuORF;nc|ENSG00000149243|Q6PF15-2|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 ENSG00000149243|ENST00000539798|KLHL35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2595825195312 2 472.758018 943.501483 0.97761 0.00046217 -0.67322 -0.00031827 0.30439 0.00014391 472.75819787478565 74.804 0.34141 68.629 68.396 68.737 -6.1757 22 17 2 0 0 0 0.013472 2 48910 48859;48910 70.716 26.309 1 9320400 65411 5993 43536 44519 76362;76363 76363 0.02747266665949155 TPLPVTDTY 9 Unmodified _TPLPVTDTY_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.75830078125 2 503.758215 1005.50188 1.124 0.0005662 -0.51858 -0.00026124 0.60537 0.00030496 503.75806595372063 59.315 0.35765 53.241 52.953 53.311 -6.0745 22 19 2 0 0 0 0.019303 1 38038 38038 64.236 26.085 1 20360000 65412 5669 43537 44520 76364 76364 -0.0006535840487913447 TPLPWFVDGH 10 Unmodified _TPLPWFVDGH_ 0 0 0 ENST00000561720.5_1_16:58529427-58541082:+|nuORF ENST00000561720.5_1_16:58529427-58541082:+|nuORF ENST00000561720.5_1_16:58529427-58541082:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 585.2929077148438 2 584.792924 1167.57129 1 0.00058481 -0.2275 -0.00013304 0.77253 0.00045177 585.2937385742113 95.101 0.54713 88.926 88.573 89.12 -6.1757 69 30 3 0 0 0 0.23057 1 63098 63098 13.042 13.042 1 10210000 65413 15331 43538 44521 76365 76365 -0.005788546654230231 TPLQESATM 9 Oxidation (M) _TPLQESATM(Oxidation (M))_ TPLQESATM(1) TPLQESATM(46) 0 0 1 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2318725585938 2 497.231507 992.448462 0.56685 0.00028186 1.1255 0.00055964 1.6924 0.0008415 497.2318273749597 28.081 0.23258 24.933 24.826 25.059 -3.1482 16 12 2 0 0 0 0.047788 1 15691 15691 45.7 24.828 1 5053000 65414 2573 43539 44522 76366 76366 444 -0.04806479179012513 TPLQESATM 9 Unmodified _TPLQESATM_ 0 0 0 ENSG00000108469|ENST00000317905|RECQL5;nc|ENSG00000108469|O94762-2|RECQL5;nc|ENSG00000108469|O94762-3|RECQL5;nc|ENSG00000108469|O94762-4|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 ENSG00000108469|ENST00000317905|RECQL5 MSMS AL20221201_MKP_PDAC_01 4 489.2369995117188 2 489.23405 976.453547 NaN NaN NaN NaN NaN NaN NaN 42.655 1 37.97 37.47 38.47 -4.6846 0 0 0 0.044471 1 25792 25792 60.074 7.8056 1 65415 2573 43539 44523 76367 76367 -0.03562175316403682 TPLQKGQTAY 10 Unmodified _TPLQKGQTAY_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3;nc|ENSG00000147130|Q14202-3|ZMYM3;ENST00000489332.1_1_X:70467340-70473105:-|nuORF nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7955322265625 2 553.795663 1105.57677 NaN NaN NaN NaN NaN NaN NaN 22.991 1 22.991 22.491 23.491 0 0 0 0 0.73227 1 11708 11708 15.248 4.4246 1 65416 5825 43540 44524 76368 76368 0.028208241263882883 TPLQNNLIEY 10 Unmodified _TPLQNNLIEY_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.8132934570312 2 602.814053 1203.61355 -0.14823 -8.9354E-05 0.082326 4.9627E-05 -0.065903 -3.9727E-05 602.8142932915234 61.718 0.31613 61.718 61.548 61.864 0 32 13 3 0 0 0 0.040614 2 34376 34376;34477 63.961 33.324 1 6888500 65417 1403 43541 44525 76369;76370 76369 0.019890759522922963 TPLQNNLIEY 10 Unmodified _TPLQNNLIEY_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.814697265625 2 602.814053 1203.61355 0.71879 0.00043329 -0.20504 -0.0001236 0.51375 0.0003097 602.8135633839727 62.319 0.53096 61.831 61.55 62.081 -0.48764 46 24 3 0 0 0 0.20771 2 33984 33883;33984 38.176 11.292 1 4355600 65418 1403 43541 44525 76371;76372 76372 0.019890759522922963 TPLQNNLIEY 10 Unmodified _TPLQNNLIEY_ 0 0 0 nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX nc|ENSG00000085224|P46100-2|ATRX nc|ENSG00000085224|P46100-2|ATRX MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3158569335938 2 602.814053 1203.61355 0.21257 0.00012814 -1.005 -0.00060581 -0.7924 -0.00047767 602.8147802516888 69.417 0.39779 63.241 63.089 63.487 -6.1757 46 20 3 0 0 0 0.084474 1 45340 45340 57.249 19.275 1 40551000 65419 1403 43541 44525 76373 76373 0.019890759522922963 TPLSGRHW 8 Unmodified _TPLSGRHW_ 0 0 0 ENST00000336273.7_1_8:98656420-98656720:+|nuORF ENST00000336273.7_1_8:98656420-98656720:+|nuORF ENST00000336273.7_1_8:98656420-98656720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 954.0125732421875 1 953.495175 952.487899 2.671 0.0025468 0.42806 0.00040815 3.0991 0.0029549 953.4956076898391 96.631 0.40982 96.624 96.416 96.826 -0.007019 36 14 3 0 0 0 0.5953 3 53564 53564;53578;53600 26.341 3.1929 1 10269000 65420 11908 43542 44526 76374;76375;76376 76374 0.009754536773698419 TPLSGRHW 8 Unmodified _TPLSGRHW_ 0 0 0 ENST00000336273.7_1_8:98656420-98656720:+|nuORF ENST00000336273.7_1_8:98656420-98656720:+|nuORF ENST00000336273.7_1_8:98656420-98656720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2529602050781 2 477.251226 952.487899 2.3566 0.0011247 1.0824 0.00051659 3.4391 0.0016413 477.25167194784416 96.61 0.40982 96.603 96.416 96.826 -0.007019 34 14 3 0 0 0 0.67481 1 53732 53732 19.439 5.9311 1 8666200 65421 11908 43542 44526 76377 76377 0.009754536773698419 TPLSQAIIHQY 11 Unmodified _TPLSQAIIHQY_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.3441772460938 2 635.843145 1269.67174 0.2916 0.00018541 0.37886 0.0002409 0.67046 0.00042631 636.3448885843103 52.922 0.16158 52.922 52.858 53.02 0 11 7 2 0 0 0 0.26767 1 29346 29346 28.495 22.289 1 1009400 65422 6015 43543 44527 76378 76378 0.047687575975714935 TPLSQAIIHQY 11 Unmodified _TPLSQAIIHQY_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.84326171875 2 635.843145 1269.67174 0.14439 9.1808E-05 0.5812 0.00036956 0.72559 0.00046136 635.8435628512744 53.494 0.45691 53.042 52.823 53.28 -0.45173 78 22 5 0 0 0 7.4143E-37 2 28879 28879;28976 177.58 146.31 1 52412000 65423 6015 43543 44527 76379;76380 76379 0.047687575975714935 TPLSQAIIHQY 11 Unmodified _TPLSQAIIHQY_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.8426513671875 2 635.843145 1269.67174 0.14345 9.1211E-05 0.63512 0.00040383 0.77857 0.00049505 635.8436990657408 53.129 0.27831 53.066 52.919 53.198 -0.063423 38 13 4 0 0 0 3.4155E-43 1 28777 28777 180.74 142.56 1 6408700 65424 6015 43543 44527 76381 76381 0.047687575975714935 TPLSQAIIHQY 11 Unmodified _TPLSQAIIHQY_ 0 0 0 nc|ENSG00000149503|Q9NQS7-2|INCENP;ENSG00000149503|ENST00000394818|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP nc|ENSG00000149503|Q9NQS7-2|INCENP MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.8436279296875 2 635.843145 1269.67174 1.236 0.00078592 -0.30516 -0.00019403 0.93087 0.00059189 635.8430050848101 58.969 0.67654 52.895 52.618 53.295 -6.0745 108 37 4 0 0 0 2.4540000000000002E-123 3 37926 37672;37794;37926 263.43 209.59 1 308760000 65425 6015 43543 44527 76382;76383;76384 76384 0.047687575975714935 TPLSQANRY 9 Unmodified _TPLSQANRY_ 0 0 0 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2719116210938 2 525.272355 1048.53016 -0.10125 -5.3183E-05 0.029621 1.5559E-05 -0.071628 -3.7624E-05 525.272393590076 26.057 0.20118 26.057 25.924 26.125 0 18 9 3 0 0 0 0.044011 1 13364 13364 47.749 19.262 1 1402600 65426 9286 43544 44528 76385 76385 0.00783384295095857 TPLSQPDRF 9 Unmodified _TPLSQPDRF_ 0 0 0 nc|ENSG00000214711|A8MX76-2|CAPN14;ENSG00000214711|ENST00000403897|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 nc|ENSG00000214711|A8MX76-2|CAPN14 MSMS AL20221201_MKP_PDAC_01 4 530.7764892578125 2 530.774731 1059.53491 NaN NaN NaN NaN NaN NaN NaN 56.282 1 50.305 49.805 50.805 -5.9769 0 0 0 0.26667 1 35901 35901 26.884 1.4843 1 65427 10505 43545 44529 76386 76386 0.007522684378500344 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.5153198242188 1 918.514239 917.506963 0.12282 0.00011281 -0.63714 -0.00058522 -0.51432 -0.00047241 918.5138234912705 56.735 0.35781 56.735 56.543 56.9 0 37 15 3 0 0 0 0.0095811 1 31497 31497 81.613 10.479 1 9567600 65428 4431 43546 44530 76387 76387 0.04490945457780526 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7613525390625 2 459.760758 917.506963 0.56067 0.00025777 -0.24251 -0.0001115 0.31816 0.00014628 459.76068475851065 56.739 0.35781 56.739 56.543 56.9 0 38 15 3 0 0 0 0.012148 1 31528 31528 74.423 14.033 1 9815500 65429 4431 43546 44530 76388 76388 0.04490945457780526 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7615661621094 2 459.760758 917.506963 0.38217 0.00017571 -0.027358 -1.2578E-05 0.35481 0.00016313 459.76081492284754 57.258 0.2582 56.768 56.622 56.88 -0.48974 28 11 4 0 0 0 0.019303 1 31096 31096 64.236 13.381 1 4890100 65430 4431 43546 44530 76389 76389 0.04490945457780526 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.51416015625 1 918.514239 917.506963 0.24578 0.00022575 -0.21275 -0.00019541 0.03303 3.0338E-05 918.5141999733036 57.204 0.32219 56.715 56.579 56.901 -0.48974 31 14 3 0 0 0 0.026094 1 31172 31172 57.471 15.377 1 6256600 65431 4431 43546 44530 76390 76390 0.04490945457780526 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5160522460938 1 918.514239 917.506963 0.79431 0.00072959 -0.2212 -0.00020318 0.57311 0.00052641 918.5142718431681 64.815 0.47179 58.639 58.396 58.868 -6.1757 52 25 3 0 0 0 0.00856 2 41921 41921;42186 100.37 10.479 1 38708000 65432 4431 43546 44530 76391;76392 76391 0.04490945457780526 TPLSSTVTL 9 Unmodified _TPLSSTVTL_ 0 0 0 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7611999511719 2 459.760758 917.506963 1.0693 0.00049164 0.24242 0.00011146 1.3118 0.00060309 459.7609273085643 64.808 0.50144 58.632 58.396 58.897 -6.1757 64 27 3 0 0 0 0.0090851 2 42067 41931;42067 85.357 14.641 1 60187000 65433 4431 43546 44530 76393;76394 76394 0.04490945457780526 TPLSSTVTLSM 11 Oxidation (M) _TPLSSTVTLSM(Oxidation (M))_ TPLSSTVTLSM(1) TPLSSTVTLSM(110) 0 0 1 ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA ENSG00000132646|ENST00000379143|PCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7943115234375 2 576.794472 1151.57439 0.38933 0.00022456 -0.50404 -0.00029073 -0.11471 -6.6164E-05 576.7940486023375 48.887 0.30377 48.516 48.35 48.654 -0.37172 45 15 4 0 0 0 1.3103E-08 1 26236 26236 107.19 69.011 1 5299200 65434 4431 43547 44531 76395 76395 811 0.004666076064040681 TPLSTGGTLAF 11 Unmodified _TPLSTGGTLAF_ 0 0 0 nc|ENSG00000167491|Q86YP4-2|GATAD2A;nc|ENSG00000167491|Q86YP4|GATAD2A;ENSG00000167491|ENST00000683918|GATAD2A nc|ENSG00000167491|Q86YP4-2|GATAD2A nc|ENSG00000167491|Q86YP4-2|GATAD2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7842407226562 2 532.784764 1063.55498 0.51122 0.00027237 0.28652 0.00015265 0.79774 0.00042502 532.7856054756942 68.202 0.38408 67.72 67.558 67.942 -0.48173 32 17 3 0 0 0 0.025642 1 37267 37267 56.177 27.095 1 2240000 65435 7616 43548 44532 76396 76396 0.025740193778119647 TPLTHLSF 8 Unmodified _TPLTHLSF_ 0 0 0 ENST00000461547.5_1_20:56189977-56190695:-|nuORF ENST00000461547.5_1_20:56189977-56190695:-|nuORF ENST00000461547.5_1_20:56189977-56190695:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2503967285156 2 458.25036 914.486168 0.27839 0.00012757 -0.36552 -0.0001675 -0.087132 -3.9928E-05 458.2501688539045 52.787 0.23792 52.335 52.219 52.457 -0.45173 28 11 3 0 0 0 0.079151 1 28511 28511 109.63 0 1 4947600 65436 13662 43549 44533 76397 76397 0.025503998687668172 TPLTHLSF 8 Unmodified _TPLTHLSF_ 0 0 0 ENST00000461547.5_1_20:56189977-56190695:-|nuORF ENST00000461547.5_1_20:56189977-56190695:-|nuORF ENST00000461547.5_1_20:56189977-56190695:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2496337890625 2 458.25036 914.486168 0.14669 6.7222E-05 0.62431 0.00028609 0.771 0.00035331 458.2502886506179 57.993 0.26752 51.965 51.853 52.121 -6.0275 18 14 2 0 0 0 0.077523 1 37130 37130 117.6 0 1 14160000 65437 13662 43549 44533 76398 76398 0.025503998687668172 TPLTHYHYRWI 11 Unmodified _TPLTHYHYRWI_ 0 0 0 REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF REV__ENST00000306107.9_3_3:105085858-105238971:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 744.3856201171875 2 743.883136 1485.75172 0.43321 0.00032225 -1.0406 -0.00077408 -0.60739 -0.00045183 743.8823473972994 82.221 0.28558 81.726 81.557 81.843 -0.4952 27 11 3 0 0 0 0.72311 1 44989 44989 4.5289 3.047 1 1342400 + 65438 25372 43550 44534 76399 76399 0.028272439913962444 TPLTTAINQP 10 Unmodified _TPLTTAINQP_ 0 0 0 REV__ENSG00000151240|ENST00000280886|DIP2C REV__ENSG00000151240|ENST00000280886|DIP2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7904052734375 2 528.290214 1054.56587 0.89799 0.0004744 -3.1704 -0.0016749 -2.2724 -0.0012005 528.78851740213 49.994 0.36322 44.455 44.218 44.581 -5.5391 41 22 3 0 0 0 0.14688 1 31244 31244 40.239 10.399 1 19195000 + 65439 21059 43551 44535 76400 76400 0.04077421752072041 TPLVDPSVY 9 Unmodified _TPLVDPSVY_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.51416015625 1 990.514239 989.506963 0.045736 4.5302E-05 0.011246 1.114E-05 0.056982 5.6442E-05 990.5142463879691 56.749 0.38882 56.749 56.609 56.998 0 30 16 2 0 0 0 0.0041763 2 31641 31523;31641 120.45 78.356 1 10640000 65440 2478 43552 44536 76401;76402 76402 0.011789454577638026 TPLVDPSVY 9 Unmodified _TPLVDPSVY_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7614135742188 2 495.760758 989.506963 0.24228 0.00012011 -0.066635 -3.3035E-05 0.17565 8.7079E-05 495.7607332421836 56.773 0.45721 56.773 56.564 57.022 0 35 19 2 0 0 0 0.016184 2 31527 31527;31652 67.344 42.67 1 41656000 65441 2478 43552 44536 76403;76404 76403 0.011789454577638026 TPLVDPSVY 9 Unmodified _TPLVDPSVY_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7611389160156 2 495.760758 989.506963 0.56841 0.0002818 -0.8495 -0.00042115 -0.28109 -0.00013935 495.7602879009061 57.394 0.27374 56.905 56.729 57.003 -0.48974 22 12 2 0 0 0 0.038285 1 31186 31186 50.855 32.72 1 1803500 65442 2478 43552 44536 76405 76405 0.011789454577638026 TPLVDPSVY 9 Unmodified _TPLVDPSVY_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7615051269531 2 495.760758 989.506963 0.51485 0.00025524 0.64472 0.00031963 1.1596 0.00057487 495.7611141143158 65.298 0.44658 59.122 58.897 59.344 -6.1757 63 24 4 0 0 0 0.010877 2 42390 42270;42390 77.984 39.833 1 57418000 65443 2478 43552 44536 76406;76407 76407 0.011789454577638026 TPLVDPSVY 9 Unmodified _TPLVDPSVY_ 0 0 0 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.0635375976562 1 990.514239 989.506963 0.40014 0.00039634 0.68962 0.00068308 1.0898 0.0010794 990.5150583424048 65.336 0.36778 59.161 58.917 59.285 -6.1757 34 20 2 0 0 0 0.0004779 3 42305 42287;42305;42428 144.35 110.25 1 17596000 65444 2478 43552 44536 76408;76409;76410 76409 0.011789454577638026 TPLVRRLQL 9 Unmodified _TPLVRRLQL_ 0 0 0 ENSG00000160410|ENST00000291842|SHKBP1;nc|ENSG00000160410|Q8TBC3-2|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.90576171875 3 365.904747 1094.69241 -0.14606 -5.3443E-05 1.3194 0.00048278 1.1733 0.00042933 365.9052446754633 44.89 0.13756 44.868 44.798 44.935 -0.022064 8 6 2 0 0 0 0.14602 1 24113 24113 20.415 3.8487 1 5505900 65445 6726 43553 44537 76411 76411 0.14885392767905614 TPLVVGVTM 9 Oxidation (M) _TPLVVGVTM(Oxidation (M))_ TPLVVGVTM(1) TPLVVGVTM(55) 0 0 1 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7591857910156 2 466.759704 931.504854 NaN NaN NaN NaN NaN NaN NaN 51.12 1 51.12 50.62 51.62 0 0 0 0 0.056448 1 28213 28213 54.774 24.549 1 65446 2613 43554 44538 76412 76412 451 0.036361934483238656 TPLVVGVTM 9 Oxidation (M) _TPLVVGVTM(Oxidation (M))_ TPLVVGVTM(1) TPLVVGVTM(64) 0 0 1 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3;nc|ENSG00000108846|O15438-3|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7599487304688 2 466.759704 931.504854 -0.14598 -6.8136E-05 -0.29505 -0.00013772 -0.44103 -0.00020585 466.7596609739169 51.624 0.24114 51.19 51.044 51.285 -0.43367 29 12 3 0 0 0 0.019303 1 27820 27820 64.236 26.085 1 6130300 65447 2613 43554 44538 76413 76413 451 0.036361934483238656 TPLYTLGVTY 10 Unmodified _TPLYTLGVTY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3035278320312 2 564.30279 1126.59103 0.85161 0.00048057 0.29184 0.00016469 1.1435 0.00064525 564.3027540735145 73.224 0.39716 72.748 72.497 72.894 -0.47588 53 17 4 0 0 0 0.017277 2 40014 40014;40122 78.149 44.047 1 7235200 65448 1925 43555 44539 76414;76415 76414 0.032794765546668714 TPLYTLGVTY 10 Unmodified _TPLYTLGVTY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1127.598754882812 1 1127.5983 1126.59103 0.53464 0.00060286 0.79362 0.00089489 1.3283 0.0014977 1127.5975430143128 73.216 0.19636 72.74 72.63 72.826 -0.47588 12 8 2 0 0 0 0.035736 1 40104 40104 65.235 39.836 1 1028300 65449 1925 43555 44539 76416 76416 0.032794765546668714 TPLYTLGVTY 10 Unmodified _TPLYTLGVTY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3035278320312 2 564.30279 1126.59103 0.4356 0.00024581 0.29698 0.00016759 0.73258 0.0004134 564.3029879724523 72.702 0.33003 72.743 72.571 72.901 0.041725 28 15 3 0 0 0 0.01132 1 40022 40022 85.272 51.17 1 4460400 65450 1925 43555 44539 76417 76417 0.032794765546668714 TPLYTLGVTY 10 Unmodified _TPLYTLGVTY_ 0 0 0 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.302978515625 2 564.30279 1126.59103 0.95719 0.00054015 -0.33507 -0.00018908 0.62212 0.00035106 564.3025935053097 80.853 0.43063 74.677 74.462 74.892 -6.1757 42 23 2 0 0 0 0.02987 1 53058 53058 68.081 42.681 1 56669000 65451 1925 43555 44539 76418 76418 0.032794765546668714 TPMDLAVAL 9 Oxidation (M) _TPM(Oxidation (M))DLAVAL_ TPM(1)DLAVAL TPM(44)DLAVAL 0 0 1 nc|ENSG00000064490|O14593-2|RFXANK;nc|ENSG00000064490|O14593-3|RFXANK;ENSG00000064490|ENST00000303088|RFXANK nc|ENSG00000064490|O14593-2|RFXANK nc|ENSG00000064490|O14593-2|RFXANK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7485656738281 2 473.749336 945.484119 0.26902 0.00012745 0.21136 0.00010013 0.48038 0.00022758 473.7493597931357 63.564 0.24493 63.564 63.464 63.709 0 19 11 2 0 0 0 0.052168 1 35469 35469 44.407 19.733 1 1241300 65452 875 43556 44540 76419 76419 136 0.009196030686325685 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(190)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2719116210938 2 596.271164 1190.52777 0.46728 0.00027862 -0.26522 -0.00015814 0.20206 0.00012048 596.2711831350367 51.444 0.28268 51.444 51.278 51.561 0 44 12 5 0 0 0 2.4143E-22 1 28381 28381 189.78 144.08 1 21094000 65453 3414 43557 44541 76420 76420 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(110)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2701416015625 2 596.271164 1190.52777 -0.30077 -0.00017934 -1.5326 -0.00091386 -1.8334 -0.0010932 596.270184201374 51.961 0.57442 51.961 51.689 52.264 0 63 25 4 0 0 0 0.0022539 1 28778 28778 107.19 79.558 1 18487000 65454 3414 43557 44541 76421 76421 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(160)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2716674804688 2 596.271164 1190.52777 0.41984 0.00025034 -0.36472 -0.00021747 0.05512 3.2866E-05 596.2710337804687 51.983 0.26956 51.549 51.4 51.669 -0.43367 30 13 4 0 0 0 6.1092E-11 1 28041 28041 160.52 125.58 1 4500600 65455 3414 43557 44541 76422 76422 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(100)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2698974609375 2 596.271164 1190.52777 0.57927 0.0003454 -2.1342 -0.0012726 -1.555 -0.00092718 596.2700317250122 52.487 0.26804 52.054 51.909 52.177 -0.43367 21 13 2 0 0 0 0.0034079 1 28382 28382 103.35 78.363 1 5366000 65456 3414 43557 44541 76423 76423 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(160)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MSMS AL20221201_MKP_PDAC_01 4 596.272705078125 2 596.271164 1190.52777 NaN NaN NaN NaN NaN NaN NaN 57.939 1 51.912 51.412 52.412 -6.0275 0 0 0 8.8608E-16 1 37094 37094 155.03 115.08 1 65457 3414 43557 44541 76424 76424 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ TPM(1)EDVLHSF TPM(110)EDVLHSF 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MSMS AL20221201_MKP_PDAC_01 4 596.2718505859375 2 596.271164 1190.52777 NaN NaN NaN NaN NaN NaN NaN 58.547 1 52.473 51.973 52.973 -6.0745 0 0 0 0.00083238 1 37520 37520 110.67 83.046 1 65458 3414 43557 44541 76425 76425 606 -0.059868322249030825 TPMEDVLHSF 10 Oxidation (M) _TPM(Oxidation (M))EDVLHSF_ 0 0 1 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 596.271164 1190.52777 -0.17147 -0.00010224 0.6258 0.00037315 0.45433 0.00027091 596.2716368077146 51.592 0.11774 51.536 51.496 51.614 -0.056503 0.02608 0.0010009 NaN 189.78 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 718870 65459 3414 43557 44541 606 -0.059868322249030825 TPMEDVLHSF 10 Unmodified _TPMEDVLHSF_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.27490234375 2 588.273706 1174.53286 -0.060062 -3.5333E-05 -1.532 -0.00090121 -1.592 -0.00093654 588.2727013038615 70.198 0.4037 70.198 70.07 70.474 0 45 23 3 0 0 0 0.024115 2 39084 39084;39187 71.922 52.665 1 2504700 65460 3414 43557 44542 76426;76427 76426 -0.04742528362271514 TPMEDVLHSF 10 Unmodified _TPMEDVLHSF_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2733764648438 2 588.273706 1174.53286 0.27845 0.0001638 -1.4433 -0.00084908 -1.1649 -0.00068527 588.2727347201383 70.684 0.46234 70.207 70.021 70.483 -0.47735 59 33 3 0 0 0 6.1092E-11 2 38717 38617;38717 160.52 129.88 1 6514800 65461 3414 43557 44542 76428;76429 76429 -0.04742528362271514 TPMEDVLHSF 10 Unmodified _TPMEDVLHSF_ 0 0 0 nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2;nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;ENST00000377259.5_2_9:71766567-71833305:+|nuORF nc|ENSG00000119139|Q9UDY2-6|TJP2 nc|ENSG00000119139|Q9UDY2-6|TJP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.778076171875 2 588.273706 1174.53286 1.1583 0.00068139 0.42923 0.0002525 1.5875 0.0009339 588.2732684445151 79.57 1.345 73.394 72.548 73.893 -6.1757 149 78 2 0 0 0 3.94E-30 7 52192 51673;51800;51925;52056;52192;52326;52455 199.75 159.8 1 36271000 65462 3414 43557 44542 76430;76431;76432;76433;76434;76435;76436 76434 -0.04742528362271514 TPMEVAVY 8 Oxidation (M) _TPM(Oxidation (M))EVAVY_ TPM(1)EVAVY TPM(54)EVAVY 0 0 1 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.4382934570312 1 925.433546 924.426269 0.31218 0.0002889 -0.92475 -0.0008558 -0.61257 -0.00056689 925.4326864860525 39.598 0.2308 39.598 39.469 39.7 0 15 10 2 0 0 0 0.31612 1 21198 21198 53.576 25.089 1 1649500 65463 16299 43558 44543 76437 76437 1812 -0.03896658856785962 TPMEVAVY 8 Oxidation (M) _TPM(Oxidation (M))EVAVY_ TPM(1)EVAVY TPM(57)EVAVY 0 0 1 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 nc|ENSG00000157514|Q99576|TSC22D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2203063964844 2 463.220411 924.426269 0.65512 0.00030346 -1.3091 -0.00060639 -0.65395 -0.00030292 463.2199106994007 39.576 0.29155 39.576 39.448 39.74 0 28 13 3 0 0 0 0.28922 1 21232 21232 56.541 18.39 1 4816100 65464 16299 43558 44543 76438 76438 1812 -0.03896658856785962 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(89)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2808227539062 2 536.280803 1070.54705 0.28649 0.00015364 -0.3743 -0.00020073 -0.087813 -4.7093E-05 536.2806347485604 48.549 0.328 48.177 47.983 48.311 -0.37171 43 16 4 0 0 0 0.0086722 2 26113 26013;26113 88.954 67.207 1 34422000 65465 7651 43559 44544 76439;76440 76440 1305 0.014601688566699522 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(72)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2845458984375 2 536.280803 1070.54705 0.19655 0.0001054 1.2595 0.00067544 1.456 0.00078084 536.2817650916305 48.858 0.24665 48.486 48.369 48.616 -0.37172 21 12 2 0 0 0 0.013041 1 26221 26221 71.922 56.075 1 21246000 65466 7651 43559 44544 76441 76441 1305 0.014601688566699522 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(75)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.28076171875 2 536.280803 1070.54705 0.397 0.0002129 0.16785 9.0015E-05 0.56485 0.00030292 536.2810942455853 48.246 0.29897 48.207 48.047 48.346 -0.038643 53 14 5 0 0 0 0.011968 2 26069 25972;26069 74.929 56.794 1 17390000 65467 7651 43559 44544 76442;76443 76443 1305 0.014601688566699522 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(82)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2825317382812 2 536.280803 1070.54705 0.32485 0.00017421 0.98673 0.00052917 1.3116 0.00070338 536.2812424524152 48.55 0.3539 48.506 48.32 48.674 -0.04369 38 16 3 0 0 0 0.009483 1 26243 26243 81.89 63.744 1 16223000 65468 7651 43559 44544 76444 76444 1305 0.014601688566699522 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(92)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2810668945312 2 536.280803 1070.54705 1.1184 0.00059977 -1.1993 -0.00064317 -0.080926 -4.3399E-05 536.2806744835498 53.688 0.4506 47.884 47.676 48.127 -5.8042 79 28 3 0 0 0 0.0082661 2 33994 33857;33994 92.491 74.356 1 92989000 65469 7651 43559 44544 76445;76446 76446 1305 0.014601688566699522 TPMFVVKAY 9 Oxidation (M) _TPM(Oxidation (M))FVVKAY_ TPM(1)FVVKAY TPM(100)FVVKAY 0 0 1 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.281494140625 2 536.280803 1070.54705 1.1602 0.00062221 0.85907 0.0004607 2.0193 0.0010829 536.2812349920308 54.101 0.36659 48.236 48.034 48.401 -5.8653 36 20 2 0 0 0 0.008513 2 34291 34148;34291 99.755 80.498 1 81629000 65470 7651 43559 44544 76447;76448 76448 1305 0.014601688566699522 TPMFVVKAY 9 Unmodified _TPMFVVKAY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.282958984375 2 528.283346 1054.55214 0.2326 0.00012288 0.24505 0.00012946 0.47765 0.00025233 528.2834877150488 56.604 0.21979 56.535 56.438 56.658 -0.068741 19 10 2 0 0 0 0.011968 1 30783 30783 74.929 50.255 1 6185700 65471 7651 43559 44545 76449 76449 0.027044727193015206 TPMFVVKAY 9 Unmodified _TPMFVVKAY_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.28369140625 2 528.283346 1054.55214 0.80184 0.0004236 -0.10741 -5.6742E-05 0.69443 0.00036686 528.283407501782 62.283 0.72161 56.107 55.76 56.482 -6.1757 117 39 4 0 0 0 0.018301 2 40196 40072;40196 65.235 47.1 1 218950000 65472 7651 43559 44545 76450;76451 76451 0.027044727193015206 TPMGPGRTV 9 Oxidation (M) _TPM(Oxidation (M))GPGRTV_ TPM(1)GPGRTV TPM(50)GPGRTV 0 0 1 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2369384765625 2 466.236927 930.459301 -0.075872 -3.5374E-05 -0.40614 -0.00018936 -0.48201 -0.00022473 466.2368785431486 18.26 0.39627 18.26 18.067 18.463 0 166 54 4 0 0 0 0.040683 1 9098 9098 49.554 18.918 1 6961400 65473 3270 43560 44546 76452 76452 584 -0.008710320140608019 TPMGPGRTV 9 Oxidation (M) _TPM(Oxidation (M))GPGRTV_ TPM(1)GPGRTV TPM(48)GPGRTV 0 0 1 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.2374267578125 2 466.236927 930.459301 1.0573 0.00049295 -1.4063E-05 -6.5568E-09 1.0573 0.00049295 466.2371005985952 19.747 0.52605 17.091 16.91 17.436 -2.6564 81 32 3 0 0 0 0.044296 1 10533 10533 47.594 22.195 1 13538000 65474 3270 43560 44546 76453 76453 584 -0.008710320140608019 TPMGPGRTV 9 Unmodified _TPMGPGRTV_ 0 0 0 ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF ENSG00000116977|ENST00000366584|LGALS8 ENSG00000116977|ENST00000366584|LGALS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2399597167969 2 458.23947 914.464386 0.58228 0.00026682 -0.11514 -5.276E-05 0.46714 0.00021406 458.23940065404315 26.862 0.41496 23.826 23.589 24.004 -3.0365 54 21 3 0 0 0 0.091924 2 14879 14764;14879 34.932 15.493 1 50143000 65475 3270 43560 44547 76454;76455 76455 0.003732718485480291 TPMGVHDCGY 10 Carbamidomethyl (C),Oxidation (M) _TPM(Oxidation (M))GVHDC(Carbamidomethyl (C))GY_ TPMGVHDC(1)GY TPM(1)GVHDCGY TPMGVHDC(50)GY TPM(50)GVHDCGY 0 1 1 ENSG00000006555|ENST00000371276|TTC22;nc|ENSG00000006555|Q5TAA0-2|TTC22;ENST00000474654.1_1_1:55252596-55253561:-|nuORF ENSG00000006555|ENST00000371276|TTC22 ENSG00000006555|ENST00000371276|TTC22 MSMS AL20221201_MKP_PDAC_01 4 576.7262573242188 2 576.726066 1151.43758 NaN NaN NaN NaN NaN NaN NaN 23.19 1 20.412 19.912 20.912 -2.7784 0 0 0 0.11618 1 12534 12534 49.933 30.676 1 65476 339 43561 44548 76456 76456 13 38 -0.13208204824923087 TPMGYIIIY 9 Unmodified _TPMGYIIIY_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.784912109375 2 535.783179 1069.5518 0.50341 0.00026972 -1.1717 -0.00062775 -0.66824 -0.00035803 535.7836343381298 47.898 0.34322 47.546 47.367 47.71 -0.3526 48 16 4 0 0 0 0.12841 1 25654 25654 30.225 0.38423 1 21869000 + 65477 20682 43562 44549 76457 76457 0.019810529994629178 TPMKKHLSL 9 Unmodified _TPMKKHLSL_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2083435058594 3 352.207438 1053.60049 0.83262 0.00029325 -0.033019 -1.163E-05 0.7996 0.00028162 352.2076715160183 23.168 0.34019 20.39 20.186 20.526 -2.7784 39 30 2 0 0 0 0.21643 2 12497 12497;12550 20.581 13.951 1 11694000 65478 6405 43563 44550 76458;76459 76458 0.07582966359200327 TPMLHAQVF 9 Oxidation (M) _TPM(Oxidation (M))LHAQVF_ TPM(1)LHAQVF TPM(65)LHAQVF 0 0 1 ENSG00000169718|ENST00000306796|DUS1L ENSG00000169718|ENST00000306796|DUS1L ENSG00000169718|ENST00000306796|DUS1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2691650390625 2 530.268227 1058.5219 0.53813 0.00028536 -0.32276 -0.00017115 0.21538 0.00011421 530.2681971676263 46.74 0.23344 46.403 46.27 46.503 -0.33664 22 11 3 0 0 0 0.018301 1 24997 24997 65.235 28.769 1 4048800 65479 7906 43564 44551 76460 76460 1344 -0.005018859459141822 TPMLHAQVF 9 Unmodified _TPMLHAQVF_ 0 0 0 ENSG00000169718|ENST00000306796|DUS1L ENSG00000169718|ENST00000306796|DUS1L ENSG00000169718|ENST00000306796|DUS1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.27197265625 2 522.27077 1042.52699 1.5506 0.00080985 1.0251 0.00053539 2.5758 0.0013452 522.7732718962495 58.734 0.35898 52.659 52.509 52.868 -6.0745 50 19 4 0 0 0 0.047196 1 37646 37646 46.021 27.886 1 30388000 65480 7906 43564 44552 76461 76461 0.007424179167173861 TPMLLLDECLQ 11 Unmodified _TPMLLLDECLQ_ 0 0 0 REV__ENSG00000083457|ENST00000263087|ITGAE REV__ENSG00000083457|ENST00000263087|ITGAE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.3153076171875 2 638.319799 1274.62505 0.1427 9.1088E-05 -4.0338 -0.0025748 -3.8911 -0.0024838 638.3169771718971 67.229 0.21088 66.747 66.656 66.866 -0.48218 17 9 2 0 0 0 0.58219 1 36718 36718 12.241 0 1 2975000 + 65481 17719 43565 44553 76462 76462 -0.0012818634022551123 TPMLRSGNL 9 Oxidation (M) _TPM(Oxidation (M))LRSGNL_ TPM(1)LRSGNL TPM(58)LRSGNL 0 0 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7638549804688 2 502.763309 1003.51206 0.20162 0.00010137 1.0925 0.00054928 1.2941 0.00065065 502.76399462435273 30.375 0.2879 30.295 30.153 30.441 -0.080429 32 10 4 0 0 0 0.025842 1 15741 15741 57.722 9.3761 1 22167000 65482 4412 43566 44554 76463 76463 805 0.01044926048734851 TPMLRSGNL 9 Oxidation (M) _TPM(Oxidation (M))LRSGNL_ TPM(1)LRSGNL TPM(53)LRSGNL 0 0 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7644348144531 2 502.763309 1003.51206 0.99813 0.00050182 -0.3399 -0.00017089 0.65823 0.00033093 502.76321009650525 34.301 0.56487 30.316 30.002 30.567 -3.9853 77 31 3 0 0 0 0.033587 2 19893 19640;19893 53.404 15.43 1 142330000 65483 4412 43566 44554 76464;76465 76465 805 0.01044926048734851 TPMLRSGNL 9 Oxidation (M) _TPM(Oxidation (M))LRSGNL_ TPM(1)LRSGNL TPM(62)LRSGNL 0 0 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7639465332031 2 502.763309 1003.51206 1.0011 0.00050333 -0.41232 -0.0002073 0.5888 0.00029603 502.763329059301 34.835 0.58493 30.74 30.438 31.023 -4.0951 103 34 4 0 0 0 0.021948 1 20146 20146 61.602 15.581 1 116310000 65484 4412 43566 44554 76466 76466 805 0.01044926048734851 TPMPKIQNVS 10 Unmodified _TPMPKIQNVS_ 0 0 0 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 ENSG00000185010|ENST00000360256|F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.8667907714844 3 372.202353 1113.58523 -0.33133 -0.00012332 -2.5501 -0.00094916 -2.8814 -0.0010725 372.2014413915087 35.013 1.2544 34.791 34.099 35.353 -0.2224 92 56 2 0 0 0 0.67755 1 18239 18239 5.4027 0.5057 1 34936000 65485 9318 43567 44555 76467 76467 0.03298054771335046 TPNEERNVM 9 Unmodified _TPNEERNVM_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.253173828125 2 545.253305 1088.49206 0.042566 2.3209E-05 0.3223 0.00017573 0.36486 0.00019894 545.2533108738735 23.005 0.21935 20.227 20.103 20.322 -2.7784 24 12 3 0 0 0 0.011291 1 12383 12383 76.825 49.196 1 4749500 65486 9257 43568 44556 76468 76468 -0.04864869681887285 TPNETISTL 9 Unmodified _TPNETISTL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2544250488281 2 488.253297 974.492041 0.0044418 2.1687E-06 0.89965 0.00043926 0.90409 0.00044143 488.2538933331437 44.254 0.28545 44.254 44.111 44.397 0 28 14 3 0 0 0 0.014417 1 24045 24045 69.105 12.928 1 15110000 65487 10367 43569 44557 76469 76469 0.0037745358977190335 TPNETISTL 9 Unmodified _TPNETISTL_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2534484863281 2 488.253297 974.492041 0.90182 0.00044032 -0.65215 -0.00031841 0.24967 0.0001219 488.2528895305483 51.319 0.37195 45.67 45.446 45.818 -5.649 27 22 2 0 0 0 0.010611 1 32210 32210 78.728 22.551 1 40433000 65488 10367 43569 44557 76470 76470 0.0037745358977190335 TPNFQSYDLD 10 Unmodified _TPNFQSYDLD_ 0 0 0 ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF ENSG00000139263|ENST00000320743|LRIG3 ENSG00000139263|ENST00000320743|LRIG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.2997436523438 2 600.264393 1198.51423 0.15131 9.0823E-05 1.0195 0.00061198 1.1708 0.00070281 600.2650284966295 59.636 0.31624 59.583 59.46 59.776 -0.053059 38 15 3 0 0 0 0.23325 1 32594 32594 6.2058 0 1 5232500 65489 5141 43570 44558 76471 76471 -0.07708366732481409 TPNLHWRE 8 Unmodified _TPNLHWRE_ 0 0 0 nc|ENSG00000117400|P40238-2|MPL;ENSG00000117400|ENST00000372470|MPL nc|ENSG00000117400|P40238-2|MPL nc|ENSG00000117400|P40238-2|MPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7683715820312 2 526.76724 1051.51993 0.88938 0.00046849 0.19118 0.00010071 1.0806 0.0005692 526.766928404737 91.178 0.26836 91.215 91.112 91.381 0.036499 12 9 2 0 0 0 0.66338 1 50739 50739 20.454 2.3073 1 3125200 65490 3300 43571 44559 76472 76472 -0.003771786394963783 TPNNLVHIY 9 Unmodified _TPNNLVHIY_ 0 0 0 ENST00000588073.1_1_17:42231773-42239297:+|nuORF;nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB ENST00000588073.1_1_17:42231773-42239297:+|nuORF ENST00000588073.1_1_17:42231773-42239297:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7854614257812 2 535.785099 1069.55564 0.79424 0.00042554 -0.56834 -0.00030451 0.2259 0.00012103 535.7849138013121 47.655 0.27229 47.655 47.517 47.789 0 30 12 3 0 0 0 0.0036082 1 26095 26095 123.45 68.677 1 6985300 65491 15643 43572 44560 76473 76473 0.023648588175319674 TPNNLVHIY 9 Unmodified _TPNNLVHIY_ 0 0 0 ENST00000588073.1_1_17:42231773-42239297:+|nuORF;nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB ENST00000588073.1_1_17:42231773-42239297:+|nuORF ENST00000588073.1_1_17:42231773-42239297:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7855224609375 2 535.785099 1069.55564 0.54724 0.0002932 0.53974 0.00028919 1.087 0.00058239 535.785372846462 53.312 0.4939 47.508 47.199 47.693 -5.8042 69 30 3 0 0 0 0.0082353 2 33702 33576;33702 96.111 58.137 1 78667000 65492 15643 43572 44560 76474;76475 76475 0.023648588175319674 TPNPKPNKKTF 11 Unmodified _TPNPKPNKKTF_ 0 0 0 ENSG00000242852|ENST00000397732|ZNF709 ENSG00000242852|ENST00000397732|ZNF709 ENSG00000242852|ENST00000397732|ZNF709 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8616333007812 2 636.358962 1270.70337 0.15043 9.5726E-05 0.7769 0.00049439 0.92733 0.00059012 636.8617122287701 65.694 0.59747 59.518 59.285 59.883 -6.1757 70 34 3 0 0 0 0.61059 1 42665 42665 10.8 1.4164 1 96808000 65493 10703 43573 44561 76476 76476 0.07884750351513503 TPNPYYIF 8 Unmodified _TPNPYYIF_ 0 0 0 REV__ENSG00000076356|ENST00000367033|PLXNA2 REV__ENSG00000076356|ENST00000367033|PLXNA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7518920898438 2 507.750193 1013.48583 NaN NaN NaN NaN NaN NaN NaN 38.271 1 37.987 37.487 38.487 -0.28357 0 0 0 0.97444 1 20143 20143 4.3292 1.334 1 + 65494 17589 43574 44562 76477 76477 -0.0203701985110456 TPPAEPIVVRL 11 Unmodified _TPPAEPIVVRL_ 0 0 0 ENST00000598180.1_1_19:46282503-46283425:-|nuORF;nc|ENSG00000104936|Q09013-8|DMPK;nc|ENSG00000104936|Q09013-5|DMPK;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK ENST00000598180.1_1_19:46282503-46283425:-|nuORF ENST00000598180.1_1_19:46282503-46283425:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5729064941406 3 397.908046 1190.70231 -0.29914 -0.00011903 -1.7822 -0.00070914 -2.0813 -0.00082816 397.9071932964817 35.917 0.23211 35.942 35.864 36.096 0.024971 21 10 3 0 0 0 0.30551 1 19035 19035 2.6312 0.72486 1 3005800 65495 15782 43575 44563 76478 76478 0.11458535982615103 TPPCPWHPGPG 11 Unmodified _TPPCPWHPGPG_ 0 0 0 ENST00000380909.8_2_22:50637297-50637582:+|nuORF ENST00000380909.8_2_22:50637297-50637582:+|nuORF ENST00000380909.8_2_22:50637297-50637582:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 572.7640380859375 2 573.263476 1144.5124 1.0836 0.00062121 -1.4721 -0.00084392 -0.38849 -0.00022271 573.2633602052802 38.103 0.16811 33.734 33.597 33.765 -4.3689 10 9 2 0 0 0 0.29564 1 22406 22406 2.9952 0 1 6983600 65496 12610 43576 44564 76479 76479 -0.0540765423143057 TPPDDDCMTI 10 Unmodified _TPPDDDCMTI_ 0 0 0 REV__ENSG00000166848|ENST00000300086|TERF2IP REV__ENSG00000166848|ENST00000300086|TERF2IP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.7669067382812 2 554.220282 1106.42601 0.54993 0.00030478 2.3122 0.0012814 2.8621 0.0015862 554.220835021663 46.269 0.17393 41.314 41.255 41.429 -4.9549 21 11 3 0 0 0 0.23227 1 28542 28542 10.824 5.0635 1 18073000 + 65497 22159 43577 44565 76480 76480 -0.1229444663895265 TPPDSDYLC 9 Unmodified _TPPDSDYLC_ 0 0 0 REV__ENST00000533851.5_1_11:18111045-18127588:-|nuORF REV__ENST00000533851.5_1_11:18111045-18127588:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.710693359375 2 505.710408 1009.40626 1.1112 0.00056196 -0.51936 -0.00026264 0.59187 0.00029931 505.71008284958685 55.242 0.36422 49.321 49.143 49.507 -5.9211 36 22 2 0 0 0 0.41742 1 35156 35156 11.64 0 1 12506000 + 65498 22148 43578 44566 76481 76481 -0.09806454587408098 TPPDSSLVTY 10 Unmodified _TPPDSSLVTY_ 0 0 0 ENST00000552390.5_1_12:57926966-57928919:-|nuORF;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2 ENST00000552390.5_1_12:57926966-57928919:-|nuORF ENST00000552390.5_1_12:57926966-57928919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.267333984375 2 540.266404 1078.51826 0.70513 0.00038096 -0.12343 -6.6686E-05 0.5817 0.00031427 540.2662680584727 47.659 0.68833 47.659 47.362 48.051 0 62 32 2 0 0 0 0.04925 3 26241 26022;26127;26241 58.679 20.705 1 12790000 65499 8495 43579 44567 76482;76483;76484 76484 -0.01786277238738876 TPPELEVRYL 10 Unmodified _TPPELEVRYL_ 0 0 0 REV__ENSG00000167680|ENST00000586582|SEMA6B REV__ENSG00000167680|ENST00000586582|SEMA6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2778930664062 2 608.832246 1215.64994 0.012428 7.5668E-06 -0.14172 -8.6282E-05 -0.12929 -7.8715E-05 609.3338231746668 61.658 0.22224 61.658 61.529 61.751 0 14 9 3 0 0 0 0.69064 1 34319 34319 3.9444 0 1 875500 + 65500 22241 43580 44568 76485 76485 0.05073952848988483 TPPEPYRF 8 Unmodified _TPPEPYRF_ 0 0 0 ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP ENSG00000148841|ENST00000337478|ITPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7520751953125 2 503.753267 1005.49198 -0.71419 -0.00035977 -0.51473 -0.0002593 -1.2289 -0.00061907 503.7528517745047 21.273 0.21654 21.302 21.187 21.404 0.028357 14 10 2 0 0 0 0.80232 1 10800 10800 5.2307 0.47466 1 1157000 65501 5969 43581 44569 76486 76486 -0.01054501619569237 TPPHLEPEV 9 Unmodified _TPPHLEPEV_ 0 0 0 ENST00000439735.2_1_X:153640546-153648389:+|nuORF;ENST00000369776.8_1_X:153640293-153648389:+|nuORF ENST00000439735.2_1_X:153640546-153648389:+|nuORF ENST00000439735.2_1_X:153640546-153648389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7642822265625 2 509.763832 1017.51311 0.28987 0.00014777 0.011149 5.6835E-06 0.30102 0.00015345 509.7637971674749 45.621 0.13631 45.621 45.527 45.664 0 10 6 2 0 0 0 0.32871 1 24894 24894 15.847 1.0089 1 2791700 65502 12314 43582 44570 76487 76487 0.005054636892964481 TPPIARRVPF 10 Unmodified _TPPIARRVPF_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MSMS AL20221201_MKP_PDAC_01 4 385.2351379394531 3 385.232864 1152.67676 NaN NaN NaN NaN NaN NaN NaN 92.918 1 86.743 86.243 87.243 -6.1757 0 0 0 0.9731 1 61469 61469 3.5871 0.5148 1 65503 5618 43583 44571 76488 76488 0.10653106250833844 TPPLGGYKV 9 Unmodified _TPPLGGYKV_ 0 0 0 nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;ENST00000490851.5_1_7:18832955-19035682:+|nuORF;ENST00000483142.5_1_7:18875588-18914218:+|nuORF nc|ENSG00000048052|Q9UKV0-2|HDAC9 nc|ENSG00000048052|Q9UKV0-2|HDAC9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2653503417969 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 1.8255 1 1.8085 1.3085 2.3085 -0.017019 0 0 0 0.84737 1 937 937 1.8442 0 1 65504 697 43584 44572 76489 76489 0.049429729028588554 TPPNAIVFSF 10 Unmodified _TPPNAIVFSF_ 0 0 0 ENSG00000007216|ENST00000314669|SLC13A2;nc|ENSG00000007216|Q13183-2|SLC13A2;nc|ENSG00000007216|Q13183-3|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 ENSG00000007216|ENST00000314669|SLC13A2 MSMS AL20221201_MKP_PDAC_01 4 365.1946105957031 3 364.862325 1091.56515 NaN NaN NaN NaN NaN NaN NaN 15.642 1 13.115 12.615 13.615 -2.5273 0 0 0 0.94014 1 8045 8045 3.3196 0.58445 1 65505 360 43585 44573 76490 76490 0.023026271030403223 TPPPGGVK 8 Unmodified _TPPPGGVK_ 0 0 0 nc|ENSG00000085365|O15126-2|SCAMP1;ENSG00000085365|ENST00000621999|SCAMP1 nc|ENSG00000085365|O15126-2|SCAMP1 nc|ENSG00000085365|O15126-2|SCAMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.718505859375 2 376.718696 751.422839 0.26554 0.00010003 1.5135 0.00057016 1.779 0.00067019 376.71830168645386 69.96 0.5645 69.991 69.683 70.247 0.030922 63 28 3 0 0 0 0.80722 1 38458 38458 2.3027 1.5091 1 6388300 65506 1406 43586 44574 76491 76491 0.037184591515256216 TPPPRRVHGAL 11 Unmodified _TPPPRRVHGAL_ 0 0 0 ENST00000608694.1_1_7:129251138-129251447:-|nuORF ENST00000608694.1_1_7:129251138-129251447:-|nuORF ENST00000608694.1_1_7:129251138-129251447:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2376098632812 3 400.903518 1199.68872 1.0809 0.00043334 -0.38736 -0.00015529 0.69356 0.00027805 400.9034602464056 57.66 0.36342 51.633 51.39 51.753 -6.0275 28 19 2 0 0 0 0.56638 1 36966 36966 10.315 2.0288 1 26104000 65507 15873 43587 44575 76492 76492 0.09686722994047159 TPPQRRLL 8 Unmodified _TPPQRRLL_ 0 0 0 REV__ENSG00000198746|ENST00000361720|GPATCH3 REV__ENSG00000198746|ENST00000361720|GPATCH3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2257080078125 2 490.803626 979.592698 0.19137 9.3926E-05 0.74176 0.00036406 0.93313 0.00045799 490.8039363675242 24.09 0.21479 21.263 21.142 21.356 -2.8273 19 11 2 0 0 0 8.7369 1 13099 13099 24.674 2.9272 1 2237400 + 65508 24051 43588 44576 76493 76493 0.1020857515395619 TPPRCHNRL 9 Unmodified _TPPRCHNRL_ 0 0 0 ENST00000531661.1_1_9:86323263-86323350:+|nuORF ENST00000531661.1_1_9:86323263-86323350:+|nuORF ENST00000531661.1_1_9:86323263-86323350:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.286865234375 2 547.287817 1092.56108 NaN NaN NaN NaN NaN NaN NaN 54.048 1 53.981 53.481 54.481 -0.066936 0 0 0 0.82396 1 29343 29343 4.756 0.42677 1 65509 14911 43589 44577 76494 76494 0.01850259128354992 TPPRRVQTPLL 11 Unmodified _TPPRRVQTPLL_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5944213867188 3 426.594461 1276.76155 1.2897 0.00055017 -0.24897 -0.00010621 1.0407 0.00044396 426.5944843465933 41.598 0.32895 36.99 36.857 37.186 -4.6079 32 21 2 0 0 0 0.51719 1 24980 24980 15.538 6.7867 1 9490500 65510 9280 43590 44578 76495 76495 0.1342443199682748 TPPTECCM 8 Unmodified _TPPTECCM_ 0 0 0 REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA REV__nc|ENSG00000163806|Q5MJ70-1|SPDYA MSMS AL20221201_MKP_PDAC_01 4 441.1644287109375 2 441.163724 880.312896 NaN NaN NaN NaN NaN NaN NaN 106.93 1 100.75 100.25 101.25 -6.1757 0 0 0 0.97444 1 71549 71549 0.79363 0 1 + 65511 21815 43591 44579 76496 76496 -0.13204793565830641 TPPTSLPEP 9 Unmodified _TPPTSLPEP_ 0 0 0 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 ENSG00000188636|ENST00000341255|RTL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4832153320312 1 938.482939 937.475663 0.31278 0.00029354 -0.43672 -0.00040985 -0.12394 -0.00011632 938.4833957047373 47.357 0.15471 47.357 47.25 47.405 0 9 6 2 0 0 0 0.41742 1 25909 25909 11.64 0 1 637720 65512 9677 43592 44580 76497 76497 0.00442372423674442 TPPTYPPPA 9 Unmodified _TPPTYPPPA_ 0 0 0 REV__ENST00000546603.5_1_12:39047686-39073432:-|nuORF REV__ENST00000546603.5_1_12:39047686-39073432:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 470.7403869628906 2 470.742368 939.470183 NaN NaN NaN NaN NaN NaN NaN 21.246 1 18.553 18.053 19.053 -2.693 0 0 0 0.76439 1 11354 11354 7.2892 0 1 + 65513 20385 43593 44581 76498 76498 -0.001973063681475651 TPPVSTSLGG 10 Unmodified _TPPVSTSLGG_ 0 0 0 REV__ENSG00000198934|ENST00000361470|MAGEE1 REV__ENSG00000198934|ENST00000361470|MAGEE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.4879760742188 1 915.478188 914.470912 0.31143 0.00028511 0.15361 0.00014063 0.46504 0.00042574 915.4781078605464 46.589 0.39046 46.589 46.391 46.781 0 56 17 4 0 0 0 0.72607 1 25540 25540 0 0 1 23846000 + 65514 24103 43594 44582 76499 76499 0.010254882809363153 TPPYLFPEY 9 Unmodified _TPPYLFPEY_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.778076171875 2 563.776408 1125.53826 0.39924 0.00022508 0.82462 0.0004649 1.2239 0.00068998 564.2779897199052 78.922 0.36427 78.436 78.189 78.553 -0.48596 44 14 4 0 0 0 0.087258 1 43183 43183 36.044 5.8194 1 1831700 65515 4494 43595 44583 76500 76500 -0.019484815081341367 TPPYLFPEY 9 Unmodified _TPPYLFPEY_ 0 0 0 ENSG00000133131|ENST00000355610|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;nc|ENSG00000133131|Q8TE76-2|MORC4 ENSG00000133131|ENST00000355610|MORC4 ENSG00000133131|ENST00000355610|MORC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.810546875 2 563.776408 1125.53826 1.2833 0.00072348 1.0012 0.00056448 2.2845 0.001288 563.7765372157962 86.06 0.32247 79.885 79.674 79.997 -6.1757 27 17 2 0 0 0 0.1474 1 56643 56643 28.487 11.545 1 10181000 65516 4494 43595 44583 76501 76501 -0.019484815081341367 TPQDLEIVY 9 Unmodified _TPQDLEIVY_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2776489257812 2 539.276772 1076.53899 0.19892 0.00010727 0.010628 5.7313E-06 0.20955 0.00011301 539.2766916488878 61.682 0.31253 61.682 61.529 61.842 0 32 13 3 0 0 0 0.094149 2 34354 34354;34466 34.402 12.655 1 4985100 65517 2669 43596 44584 76502;76503 76502 0.003783131409136331 TPQEQVDSLIM 11 Oxidation (M) _TPQEQVDSLIM(Oxidation (M))_ TPQEQVDSLIM(1) TPQEQVDSLIM(44) 0 0 1 nc|ENSG00000131165|Q9HD42-2|CHMP1A;ENST00000547687.1_1_16:89712476-89713182:-|nuORF;ENSG00000131165|ENST00000397901|CHMP1A nc|ENSG00000131165|Q9HD42-2|CHMP1A nc|ENSG00000131165|Q9HD42-2|CHMP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.8076171875 2 638.80811 1275.60167 0.3095 0.00019771 -1.0819 -0.00069115 -0.77243 -0.00049344 638.8076258020969 53.468 0.36387 53.468 53.281 53.645 0 35 16 3 0 0 0 0.08701 1 29625 29625 43.982 30.076 1 5723400 65518 4306 43597 44585 76504 76504 774 -0.025109088532417445 TPQESIQLY 9 Unmodified _TPQESIQLY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7745361328125 2 539.774396 1077.53424 0.28429 0.00015345 -0.60783 -0.00032809 -0.32354 -0.00017464 539.7742213395952 52.685 0.58009 52.685 52.402 52.982 0 62 20 4 0 0 0 0.10247 1 29201 29201 32.786 0.4802 1 36467000 65519 8967 43598 44586 76505 76505 -0.0014257100183385774 TPQESIQLY 9 Unmodified _TPQESIQLY_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7735595703125 2 539.774396 1077.53424 0.23085 0.00012461 -0.13859 -7.4805E-05 0.092263 4.9801E-05 540.2765811421131 53.224 0.34867 52.772 52.594 52.943 -0.45173 28 17 2 0 0 0 0.20428 1 28820 28820 22.736 3.4793 1 2519100 65520 8967 43598 44586 76506 76506 -0.0014257100183385774 TPQEVAEAF 9 Unmodified _TPQEVAEAF_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.23876953125 2 496.24019 990.465826 NaN NaN NaN NaN NaN NaN NaN 48.607 1 48.607 48.107 49.107 0 0 0 0 0.059498 1 26682 26682 53.833 32.296 1 65521 10710 43599 44587 76507 76507 -0.029788155817186635 TPQGFRSTL 9 Unmodified _TPQGFRSTL_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.767578125 2 503.769448 1005.52434 -0.79661 -0.00040131 -0.21027 -0.00010593 -1.0069 -0.00050724 503.76863169703574 35.212 0.29903 34.989 34.808 35.107 -0.2224 27 13 3 0 0 0 0.047788 1 18422 18422 45.7 5.7423 1 2601300 65522 5038 43600 44588 76508 76508 0.021802857834245515 TPQGFRSTL 9 Unmodified _TPQGFRSTL_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7713623046875 2 503.769448 1005.52434 0.91308 0.00045998 0.62612 0.00031542 1.5392 0.0007754 503.7697497305069 39.308 0.33917 34.857 34.734 35.073 -4.4509 36 20 2 0 0 0 0.044296 1 23374 23374 47.594 11.467 1 12624000 65523 5038 43600 44588 76509 76509 0.021802857834245515 TPQGGIVVY 9 Unmodified _TPQGGIVVY_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.50390625 1 933.504009 932.496732 0.72337 0.00067527 0.16715 0.00015604 0.89053 0.00083131 933.5040832815087 49.518 0.27687 49.518 49.352 49.629 0 25 11 3 0 0 0 0.0059585 1 27216 27216 114.65 59.876 1 4424400 65524 2228 43601 44589 76510 76510 0.02778382523183609 TPQGGIVVY 9 Unmodified _TPQGGIVVY_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2573547363281 2 467.255643 932.496732 0.86208 0.00040281 1.0089 0.0004714 1.871 0.00087422 467.2561249066296 49.504 0.33731 49.504 49.333 49.671 0 41 14 4 0 0 0 0.06294 2 27220 27220;27339 41.84 3.6884 1 13175000 65525 2228 43601 44589 76511;76512 76511 0.02778382523183609 TPQGGIVVY 9 Unmodified _TPQGGIVVY_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2557373046875 2 467.255643 932.496732 0.45227 0.00021132 0.82665 0.00038626 1.2789 0.00059758 467.2560390967704 56.804 0.30933 50.828 50.632 50.941 -5.9769 24 17 2 0 0 0 0.020973 1 36225 36225 62.573 3.8939 1 25806000 65526 2228 43601 44589 76513 76513 0.02778382523183609 TPQGGIVVY 9 Unmodified _TPQGGIVVY_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 933.5035400390625 1 933.504009 932.496732 0.5563 0.00051931 -0.010756 -1.004E-05 0.54554 0.00050927 933.5040229049184 56.798 0.22213 50.822 50.719 50.941 -5.9769 16 12 2 0 0 0 0.008513 1 36247 36247 99.755 35.519 1 15403000 65527 2228 43601 44589 76514 76514 0.02778382523183609 TPQGIISTF 9 Unmodified _TPQGIISTF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2612915039062 2 482.260925 962.507297 0.18847 9.0891E-05 0.12723 6.1356E-05 0.31569 0.00015225 482.26099575379936 65.66 0.40132 65.176 64.959 65.36 -0.48428 46 17 4 0 0 0 0.0082353 1 35836 35836 96.111 37.432 1 10985000 65528 8367 43602 44590 76515 76515 0.024543651776298248 TPQKYPRWHQP 11 Unmodified _TPQKYPRWHQP_ 0 0 0 ENST00000339310.7_1_10:103347357-103347417:-|nuORF ENST00000339310.7_1_10:103347357-103347417:-|nuORF ENST00000339310.7_1_10:103347357-103347417:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 719.8751220703125 2 719.372935 1436.73132 0.40367 0.00029039 -1.1094 -0.00079809 -0.70576 -0.0005077 719.3720738758154 46.415 0.25158 46.079 45.939 46.19 -0.33664 38 12 4 0 0 0 0.71341 1 24905 24905 2.9952 0 1 39028000 65529 11949 43603 44591 76516 76516 0.030420733315850157 TPQMSGFR 8 Unmodified _TPQMSGFR_ 0 0 0 ENST00000545177.4_1_6:2858153-2876648:-|nuORF;ENST00000420981.2_1_6:2855770-2876648:-|nuORF ENST00000545177.4_1_6:2858153-2876648:-|nuORF ENST00000545177.4_1_6:2858153-2876648:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.2237243652344 2 462.22382 922.433086 NaN NaN NaN NaN NaN NaN NaN 17.701 1 15.115 14.615 15.615 -2.5866 0 0 0 0.4236 1 9280 9280 50.855 2.5092 1 65530 13105 43604 44592 76517 76517 -0.031233011855420045 TPQRFFYS 8 Unmodified _TPQRFFYS_ 0 0 0 REV__ENSG00000273079|ENST00000609686|GRIN2B REV__ENSG00000273079|ENST00000609686|GRIN2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.257568359375 2 523.258717 1044.50288 NaN NaN NaN NaN NaN NaN NaN 14.154 1 14.154 13.654 14.654 0 0 0 0 0.97444 1 6710 6710 1.8442 0 1 + 65531 24633 43605 44593 76518 76518 -0.017590992453051513 TPQSCAEQQQI 11 Unmodified _TPQSCAEQQQI_ 0 0 0 REV__ENST00000464682.2_1_12:2986404-2997188:+|nuORF REV__ENST00000464682.2_1_12:2986404-2997188:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7824096679688 2 616.782427 1231.5503 1.2328 0.00076034 -1.3122 -0.00080932 -0.07941 -4.8979E-05 616.7814892294714 95.701 0.43372 89.525 89.351 89.785 -6.1757 65 26 3 0 0 0 0.29175 1 63468 63468 27.223 6.8087 1 31208000 + 65532 27380 43606 44594 76519 76519 -0.05621232827252243 TPQSIPYQD 9 Unmodified _TPQSIPYQD_ 0 0 0 ENST00000479967.5_1_3:127434467-127541990:-|nuORF;nc|ENSG00000074416|Q99685-2|MGLL;nc|ENSG00000074416|Q99685|MGLL;ENSG00000074416|ENST00000265052|MGLL ENST00000479967.5_1_3:127434467-127541990:-|nuORF ENST00000479967.5_1_3:127434467-127541990:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7503051757812 2 524.750921 1047.48729 0.78001 0.00040931 -0.60876 -0.00031945 0.17125 8.9861E-05 524.75038908263 60.778 0.30405 60.778 60.559 60.863 0 21 12 2 0 0 0 0.19127 1 33874 33874 24.021 2.4836 1 1492400 65533 14050 43607 44595 76520 76520 -0.0345543055300368 TPQSLFILF 9 Unmodified _TPQSLFILF_ 0 0 0 nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF nc|ENSG00000011304|P26599-1|PTBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3021850585938 2 533.302593 1064.59063 -0.56191 -0.00029967 0.64609 0.00034456 0.084184 4.4895E-05 533.3028139172768 101.24 0.079559 101.2 101.14 101.22 -0.042152 8 2 4 0 0 0 0.032796 1 56250 56250 53.833 11.738 1 15175000 65534 443;15632 43608 44596 76521 76521 0.06092101625449686 TPQSNRPVM 9 Oxidation (M) _TPQSNRPVM(Oxidation (M))_ TPQSNRPVM(1) TPQSNRPVM(44) 0 0 1 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2584228515625 2 523.258391 1044.50223 -0.22759 -0.00011909 -0.086517 -4.5271E-05 -0.31411 -0.00016436 523.2584437911833 14.643 0.37893 14.643 14.396 14.775 0 227 106 3 0 0 0 0.05447 1 6992 6992 43.858 16.975 1 1489600 65535 8957 43609 44597 76522 76522 1507 -0.018242619566535723 TPQSNRPVM 9 Oxidation (M) _TPQSNRPVM(Oxidation (M))_ TPQSNRPVM(1) TPQSNRPVM(110) 0 0 1 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2591552734375 2 523.258391 1044.50223 0.24116 0.00012619 0.26117 0.00013666 0.50233 0.00026285 523.2586277819827 14.995 0.27672 12.468 12.307 12.584 -2.5273 103 46 3 0 0 0 0.0074135 1 7688 7688 110.67 46.438 1 5498000 65536 8957 43609 44597 76523 76523 1507 -0.018242619566535723 TPQSNRPVM 9 Unmodified _TPQSNRPVM_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2600708007812 2 515.260933 1028.50731 NaN NaN NaN NaN NaN NaN NaN 20.529 1 20.529 20.029 21.029 0 0 0 0 0.25233 1 10335 10335 27.629 9.4938 1 65537 8957 43609 44598 76524 76524 -0.005799580940447413 TPQSNRPVM 9 Unmodified _TPQSNRPVM_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2611083984375 2 515.260933 1028.50731 0.31803 0.00016387 -0.50944 -0.0002625 -0.19142 -9.8629E-05 515.2608396979026 22.661 0.39917 19.883 19.69 20.089 -2.7784 71 28 3 0 0 0 0.010301 2 12123 12123;12229 79.596 37.82 1 32026000 65538 8957 43609 44598 76525;76526 76525 -0.005799580940447413 TPRATLITF 9 Unmodified _TPRATLITF_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2974548339844 2 510.297842 1018.58113 0.5516 0.00028148 -0.10931 -5.5779E-05 0.44229 0.0002257 510.2977495166485 59.712 0.35695 59.659 59.499 59.856 -0.053062 29 17 2 0 0 0 0.032796 1 32548 32548 53.833 3.8998 1 17039000 65539 9906 43610 44599 76527 76527 0.07258333339950696 TPRATLITF 9 Unmodified _TPRATLITF_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2979431152344 2 510.297842 1018.58113 0.46142 0.00023546 -1.3857 -0.00070713 -0.92431 -0.00047167 510.297126967252 65.128 0.46901 58.952 58.715 59.184 -6.1757 46 25 2 0 0 0 0.085319 1 42334 42334 36.506 6.2814 1 33355000 65540 9906 43610 44599 76528 76528 0.07258333339950696 TPRCRYDQK 9 Unmodified _TPRCRYDQK_ 0 0 0 REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.294677734375 2 583.790389 1165.56623 -0.26878 -0.00015691 0.29593 0.00017276 0.027143 1.5846E-05 583.7903401052512 71.186 0.36504 71.186 71.019 71.384 0 44 17 3 0 0 0 0.49272 1 39594 39594 7.9102 1.187 1 2796400 + 65541 28219 43611 44600 76529 76529 -0.009934817997418577 TPRCRYDQK 9 Unmodified _TPRCRYDQK_ 0 0 0 REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF REV__ENST00000515564.5_1_4:152622580-152640660:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.294677734375 2 583.790389 1165.56623 -0.26878 -0.00015691 0.29593 0.00017276 0.027143 1.5846E-05 583.7903401052512 71.186 0.36504 71.186 71.019 71.384 0 44 17 3 0 0 0 0.20727 1 39594 39594 7.9102 1.187 1 2796400 + 65542 28219 43611 44600 76530 76530 -0.009934817997418577 TPREEIARL 9 Unmodified _TPREEIARL_ 0 0 0 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 ENSG00000143850|ENST00000272203|PLEKHA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.20849609375 3 362.208495 1083.60366 -0.33493 -0.00012132 0.40373 0.00014623 0.068796 2.4918E-05 362.208721419364 30.876 0.18319 30.876 30.791 30.974 0 13 8 2 0 0 0 0.43515 1 16062 16062 10.899 5.1155 1 2934100 65543 5560 43612 44601 76531 76531 0.06519932737569434 TPRENSKSSM 10 Unmodified _TPRENSKSSM_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7701416015625 2 568.771862 1135.52917 0.73565 0.00041842 0.58015 0.00032998 1.3158 0.0007484 568.7720793103523 49.293 0.34349 48.921 48.734 49.078 -0.37172 51 16 4 0 0 0 0.54684 1 26451 26451 13.906 0 1 29966000 65544 5948 43613 44602 76532 76532 -0.03317198136119259 TPRENSKSSM 10 Unmodified _TPRENSKSSM_ 0 0 0 ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A ENSG00000148606|ENST00000372371|POLR3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7721557617188 2 568.771862 1135.52917 0.34753 0.00019766 -0.34866 -0.00019831 -0.0011306 -6.4305E-07 568.7716223168394 48.934 0.86494 48.891 48.591 49.456 -0.04369 146 42 6 0 0 0 0.44373 1 26361 26361 19.257 0 1 794550000 65545 5948 43613 44602 76533 76533 -0.03317198136119259 TPREYLLY 8 Unmodified _TPREYLLY_ 0 0 0 REV__ENSG00000169814|ENST00000643237|BTD REV__ENSG00000169814|ENST00000643237|BTD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.7533569335938 2 527.782025 1053.5495 1.1636 0.00061415 1.6566 0.0008743 2.8202 0.0014884 527.783385354213 50.264 0.39837 44.725 44.502 44.9 -5.5391 41 25 2 0 0 0 8.7369 1 31340 31340 7.2892 0 1 10220000 + 65546 22426 43614 44603 76534 76534 0.024863405860060084 TPRGAPLL 8 Unmodified _TPRGAPLL_ 0 0 0 REV__ENSG00000144224|ENST00000272638|UBXN4 REV__ENSG00000144224|ENST00000272638|UBXN4 MSMS AL20221201_MKP_PDAC_01 4 412.7543640136719 2 412.75307 823.491587 NaN NaN NaN NaN NaN NaN NaN 105.83 1 99.655 99.155 100.15 -6.1757 0 0 0 0.97444 1 70881 70881 0.79363 0 1 + 65547 20693 43615 44604 76535 76535 0.07278123451237661 TPRGGVGSVAL 11 Unmodified _TPRGGVGSVAL_ 0 0 0 nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8 nc|ENSG00000145332|Q9P2G9-2|KLHL8 nc|ENSG00000145332|Q9P2G9-2|KLHL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2906494140625 2 507.290548 1012.56654 -0.32166 -0.00016318 0.49088 0.00024902 0.16921 8.5841E-05 507.2907650971515 37.922 0.22 37.65 37.562 37.782 -0.27133 18 10 2 0 0 0 0.39848 1 19946 19946 21.59 21.59 1 2811700 65548 5685 43616 44605 76536 76536 0.060762611917994036 TPRGGVGSVAL 11 Unmodified _TPRGGVGSVAL_ 0 0 0 nc|ENSG00000145332|Q9P2G9-2|KLHL8;ENSG00000145332|ENST00000273963|KLHL8 nc|ENSG00000145332|Q9P2G9-2|KLHL8 nc|ENSG00000145332|Q9P2G9-2|KLHL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2915954589844 2 507.290548 1012.56654 0.78218 0.00039679 1.6045 0.00081395 2.3867 0.0012107 507.29145470121205 42.419 0.42039 37.734 37.531 37.952 -4.6846 50 24 3 0 0 0 0.20054 2 25534 25534;25666 32.037 13.891 1 28787000 65549 5685 43616 44605 76537;76538 76537 0.060762611917994036 TPRGPDPAL 9 Unmodified _TPRGPDPAL_ 0 0 0 ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13 ENST00000566842.5_1_16:29918195-29922616:-|nuORF ENST00000566842.5_1_16:29918195-29922616:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2507934570312 2 462.250892 922.48723 1.6767E-05 7.7508E-09 -1.4971 -0.00069203 -1.4971 -0.00069202 462.25030880659233 29.769 0.2456 29.769 29.643 29.888 0 21 14 2 0 0 0 0.020973 1 15414 15414 62.573 20.733 1 7313400 65550 8471 43617 44606 76539 76539 0.022886142376592034 TPRGPDPAL 9 Unmodified _TPRGPDPAL_ 0 0 0 ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13 ENST00000566842.5_1_16:29918195-29922616:-|nuORF ENST00000566842.5_1_16:29918195-29922616:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.25048828125 2 462.250892 922.48723 NaN NaN NaN NaN NaN NaN NaN 33.389 1 29.403 28.903 29.903 -3.9853 0 0 0 0.076083 1 19146 19146 49.554 6.5863 1 65551 8471 43617 44606 76540 76540 0.022886142376592034 TPRHIIVRF 9 Unmodified _TPRHIIVRF_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2331848144531 3 380.232975 1137.6771 1.5743 0.00059861 -0.70446 -0.00026786 0.86986 0.00033075 380.2326032691807 79.766 1.3256 73.59 73.008 74.334 -6.1757 212 78 3 0 0 0 0.037118 7 52391 51994;52128;52262;52391;52522;52648;52798 51.488 37.873 1 70652000 65552 15960 43618 44607 76541;76542;76543;76544;76545;76546;76547 76544 0.11376525970695184 TPRHIIVRF 9 Unmodified _TPRHIIVRF_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense MSMS AL20221201_MKP_PDAC_01 4 380.5577697753906 3 380.232975 1137.6771 NaN NaN NaN NaN NaN NaN NaN 79.13 1 72.954 72.454 73.454 -6.1757 0 0 0 0.79814 1 51840 51840 6.1918 0.89496 1 65553 15960 43618 44607 76548 76548 0.11376525970695184 TPRHIIVRF 9 Unmodified _TPRHIIVRF_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|14|1|sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.542724609375 3 380.232975 1137.6771 1.6882 0.00064191 -1.0961 -0.00041678 0.59208 0.00022513 380.232541274504 37.383 0.39985 33.1 32.923 33.322 -4.2835 77 23 4 0 0 0 0.18811 1 22032 22032 16.566 15.236 1 117750000 65554 15960 43618 44607 76549 76549 0.11376525970695184 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.3037719726562 2 553.303655 1104.59276 -0.37538 -0.0002077 -0.40096 -0.00022185 -0.77635 -0.00042956 553.3033685182376 28.334 0.38953 28.334 28.189 28.579 0 51 21 3 0 0 0 0.19127 1 14695 14695 24.021 0 1 9548900 65555 6478 43619 44608 76550 76550 0.04464530363270569 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.2046508789062 3 369.204862 1104.59276 0.56177 0.00020741 0.43172 0.00015939 0.99349 0.0003668 369.2049703914217 28.421 0.30327 28.359 28.199 28.502 -0.062159 27 11 3 0 0 0 0.12424 1 14658 14658 28.495 12.756 1 9748600 65556 6478 43619 44608 76551 76551 0.04464530363270569 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8054809570312 2 553.303655 1104.59276 0.63008 0.00034863 -0.1187 -6.5676E-05 0.51138 0.00028295 553.3036289070659 31.491 0.30483 27.795 27.622 27.927 -3.6958 27 15 2 0 0 0 0.012668 1 17780 17780 72.968 20.7 1 47772000 65557 6478 43619 44608 76552 76552 0.04464530363270569 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2050170898438 3 369.204862 1104.59276 1.2051 0.00044493 -0.41366 -0.00015273 0.79145 0.00029221 369.2047109267831 31.501 0.34151 27.805 27.642 27.983 -3.6958 30 17 2 0 0 0 0.094149 1 17790 17790 26.021 2.2309 1 73140000 65558 6478 43619 44608 76553 76553 0.04464530363270569 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.204862 1104.59276 0.56177 0.00020741 0.43172 0.00015939 0.99349 0.0003668 369.2049703914217 28.421 0.30327 28.359 28.199 28.502 -0.062159 0.0194 -0.00028973 NaN 28.495 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9748600 65559 6478 43619 44608 0.04464530363270569 TPRKDFTQL 9 Unmodified _TPRKDFTQL_ 0 0 0 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 ENSG00000156711|ENST00000211287|MAPK13 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 369.204862 1104.59276 0.12367 4.5659E-05 1.331 0.00049141 1.4547 0.00053707 369.20530624219384 28.298 0.23816 28.327 28.163 28.401 0.029564 -0.012019 0.00070633 NaN 28.495 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1920600 65560 6478 43619 44608 0.04464530363270569 TPRKIKKKQGK 11 Unmodified _TPRKIKKKQGK_ 0 0 0 ENST00000564508.2_1_16:72460126-72460231:+|nuORF ENST00000564508.2_1_16:72460126-72460231:+|nuORF ENST00000564508.2_1_16:72460126-72460231:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 656.4326782226562 2 656.432796 1310.85104 NaN NaN NaN NaN NaN NaN NaN 103.27 1 97.091 96.591 97.591 -6.1757 0 0 0 0.9435 1 69247 69247 0 0 1 65561 15386 43620 44609 76554 76554 0.20804686676137862 TPRLFYKMK 9 Unmodified _TPRLFYKMK_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2269592285156 3 395.226722 1182.65834 NaN NaN NaN NaN NaN NaN NaN 76.124 1 75.644 75.144 76.144 -0.47945 0 0 0 0.85798 1 41673 41673 0.23584 0.028987 1 + 65562 18305 43621 44610 76555 76555 0.07431228284622193 TPRLYPPF 8 Unmodified _TPRLYPPF_ 0 0 0 ENST00000290158.8_1_17:45761520-45761586:+|nuORF ENST00000290158.8_1_17:45761520-45761586:+|nuORF ENST00000290158.8_1_17:45761520-45761586:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7728881835938 2 495.774003 989.533452 NaN NaN NaN NaN NaN NaN NaN 59.73 1 59.239 58.739 59.739 -0.49079 0 0 0 0.93587 1 32500 32500 13.508 4.1604 1 65563 11462 43622 44611 76556 76556 0.03826679139751832 TPRMPWRD 8 Unmodified _TPRMPWRD_ 0 0 0 nc|ENSG00000129219|O14939-4|PLD2;ENSG00000129219|ENST00000263088|PLD2;ENST00000575246.6_1_17:4711576-4721404:+|nuORF;ENST00000573258.1_1_17:4719977-4720380:+|nuORF nc|ENSG00000129219|O14939-4|PLD2 nc|ENSG00000129219|O14939-4|PLD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2894897460938 2 529.763643 1057.51273 0.77669 0.00041146 -1.4149 -0.00074955 -0.63819 -0.00033809 529.7620981373991 60.352 0.4912 60.352 60.023 60.514 0 25 21 2 0 0 0 8.7369 1 33478 33478 23.148 0.41214 1 868960 65564 4122 43623 44612 76557 76557 -0.013722345115638745 TPRMVLVR 8 Unmodified _TPRMVLVR_ 0 0 0 ENST00000572418.1_1_17:3807220-3819678:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1 ENST00000572418.1_1_17:3807220-3819678:-|nuORF ENST00000572418.1_1_17:3807220-3819678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2945556640625 2 486.294579 970.574605 NaN NaN NaN NaN NaN NaN NaN 101.99 1 101.94 101.44 102.44 -0.045853 0 0 0 0.97444 1 56653 56653 2.0598 0 1 65565 2566 43624 44613 76558 76558 0.08814116907581138 TPRNLNRSL 9 Unmodified _TPRNLNRSL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5408630371094 3 357.540357 1069.59924 0.011919 4.2616E-06 1.6047 0.00057373 1.6166 0.000578 357.54089227828285 19.695 0.14957 19.702 19.629 19.779 0.0078487 20 6 4 0 0 0 0.058763 1 10028 10028 42.835 28.617 1 2664500 65566 7487 43625 44614 76559 76559 0.06722468314660546 TPRNLNRSL 9 Unmodified _TPRNLNRSL_ 0 0 0 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 ENSG00000166439|ENST00000299563|RNF169 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 357.5556030273438 3 357.540357 1069.59924 1.7777 0.0006356 0.26946 9.6341E-05 2.0471 0.00073194 357.54056420764283 21.772 0.40953 19.037 18.827 19.237 -2.7348 61 22 4 0 0 0 0.21217 1 11675 11675 7.4771 7.4771 1 14581000 65567 7487 43625 44614 76560 76560 0.06722468314660546 TPRNQEACEL 10 Unmodified _TPRNQEACEL_ 0 0 0 ENSG00000204444|ENST00000375916|APOM;nc|ENSG00000204444|O95445-2|APOM ENSG00000204444|ENST00000375916|APOM ENSG00000204444|ENST00000375916|APOM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2774047851562 2 580.771862 1159.52917 -1.1641 -0.00067609 0.21172 0.00012296 -0.95239 -0.00055312 580.7718901386738 32.431 0.41621 32.431 32.297 32.714 0 101 24 5 0 0 0 0.45406 1 17054 17054 21.537 8.4945 1 684950000 65568 10286 43626 44615 76561 76561 -0.04421198136151361 TPRNTVSQSI 10 Unmodified _TPRNTVSQSI_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MSMS AL20221201_MKP_PDAC_01 4 551.797607421875 2 551.796195 1101.57784 NaN NaN NaN NaN NaN NaN NaN 26.949 1 23.913 23.413 24.413 -3.0365 0 0 0 0.38764 1 14896 14896 32.037 4.8142 1 65569 5657 43627 44616 76562 76562 0.031110384952853565 TPRPATEAELL 11 Unmodified _TPRPATEAELL_ 0 0 0 ENSG00000094631|ENST00000334136|HDAC6;nc|ENSG00000094631|Q9UBN7-2|HDAC6;ENST00000495515.1_1_X:48674602-48675118:+|nuORF ENSG00000094631|ENST00000334136|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.3273315429688 2 599.327328 1196.6401 NaN NaN NaN NaN NaN NaN NaN 44.496 1 44.496 43.996 44.996 0 0 0 0 0.054406 1 24211 24211 61.09 15.39 1 65570 1635 43628 44617 76563 76563 0.04964764843612102 TPRPPHLL 8 Unmodified _TPRPPHLL_ 0 0 0 ENSG00000142959|ENST00000372207|BEST4 ENSG00000142959|ENST00000372207|BEST4 ENSG00000142959|ENST00000372207|BEST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7788391113281 2 465.779619 929.544686 0.67255 0.00031326 -1.0766 -0.00050146 -0.40404 -0.0001882 465.77915154484856 81.319 0.20439 80.826 80.792 80.997 -0.49247 14 8 2 0 0 0 0.80676 1 44549 44549 2.5775 0 1 440100 65571 5455 43629 44618 76564 76564 0.07709501233898663 TPRPPPQINL 10 Unmodified _TPRPPPQINL_ 0 0 0 ENST00000597550.5_1_19:53700488-53703885:+|nuORF ENST00000597550.5_1_19:53700488-53703885:+|nuORF ENST00000597550.5_1_19:53700488-53703885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.8283081054688 2 566.827298 1131.64004 0.83572 0.00047371 -0.060757 -3.4439E-05 0.77496 0.00043927 566.8273521616055 47.392 0.49949 47.04 46.665 47.165 -0.3526 34 24 2 0 0 0 0.32493 1 25399 25399 26.021 7.8744 1 2237200 65572 15776 43630 44619 76565 76565 0.07948809634262943 TPRPPPQINL 10 Unmodified _TPRPPPQINL_ 0 0 0 ENST00000597550.5_1_19:53700488-53703885:+|nuORF ENST00000597550.5_1_19:53700488-53703885:+|nuORF ENST00000597550.5_1_19:53700488-53703885:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 566.827298 1131.64004 1.5459 0.00087628 1.6235 0.00092025 3.1695 0.0017965 566.8282848045321 46.685 0.22475 46.652 46.529 46.753 -0.033421 -0.19379 0.0011927 NaN 26.021 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1812100 65573 15776 43630 44619 0.07948809634262943 TPRPTAAEL 9 Unmodified _TPRPTAAEL_ 0 0 0 nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENSG00000139641|ENST00000394048|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF nc|ENSG00000139641|Q9BSJ8-2|ESYT1 nc|ENSG00000139641|Q9BSJ8-2|ESYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2632751464844 2 478.263999 954.513445 -0.31906 -0.00015259 0.083642 4.0003E-05 -0.23542 -0.00011259 478.26421153990395 29.712 0.19616 29.712 29.608 29.804 0 21 10 3 0 0 0 0.27545 1 15385 15385 18.373 3.1246 1 5534200 65574 5174 43631 44620 76566 76566 0.03436883409131042 TPRRPAGLL 9 Unmodified _TPRRPAGLL_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;ENST00000492955.1_1_2:160760093-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8040771484375 2 490.803626 979.592698 0.42503 0.00020861 -0.072703 -3.5683E-05 0.35233 0.00017292 490.80348949018776 28.673 0.22811 28.703 28.569 28.797 0.029564 19 8 3 0 0 0 0.14602 1 14924 14924 28.487 12.719 1 5877900 65575 755 43632 44621 76567 76567 0.10208575153933452 TPRRPAGLL 9 Unmodified _TPRRPAGLL_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;ENST00000492955.1_1_2:160760093-160761235:-|nuORF ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.8039855957031 2 490.803626 979.592698 0.54937 0.00026963 -0.3292 -0.00016157 0.22017 0.00010806 490.80361864384065 31.758 0.31828 28.062 27.908 28.226 -3.6958 24 17 2 0 0 0 0.047196 1 18009 18009 46.021 21.347 1 18879000 65576 755 43632 44621 76568 76568 0.10208575153933452 TPRRPFEKSRL 11 Unmodified _TPRRPFEKSRL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.9370422363281 3 462.936999 1385.78917 0.15054 6.9689E-05 -0.20592 -9.5326E-05 -0.055378 -2.5637E-05 462.93691617728473 17.432 0.18357 17.437 17.348 17.532 0.0050564 46 13 5 0 0 0 0.68995 1 8777 8777 5.1984 2.5672 1 25056000 65577 8038 43633 44622 76569 76569 0.1117033525702027 TPRRPFEKSRL 11 Unmodified _TPRRPFEKSRL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.9372253417969 3 462.936999 1385.78917 0.81082 0.00037536 -0.079126 -3.663E-05 0.7317 0.00033873 462.93698395555714 18.825 0.42147 16.204 16.001 16.423 -2.6215 121 30 5 0 0 0 0.67816 2 9955 9855;9955 6.3051 3.1711 1 233300000 65578 8038 43633 44622 76570;76571 76571 0.1117033525702027 TPRRPFEKSRL 11 Unmodified _TPRRPFEKSRL_ 0 0 0 ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF ENSG00000170889|ENST00000302907|RPS9 ENSG00000170889|ENST00000302907|RPS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.9019775390625 2 693.90186 1385.78917 0.33003 0.00022901 0.045115 3.1305E-05 0.37515 0.00026032 694.4035989111412 18.822 0.14256 16.2 16.116 16.259 -2.6215 13 8 2 0 0 0 0.6704 1 9920 9920 5.4027 4.2094 1 2072000 65579 8038 43633 44622 76572 76572 0.1117033525702027 TPRSGEGTVL 10 Unmodified _TPRSGEGTVL_ 0 0 0 nc|ENSG00000048162|Q9Y3C1-3|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16 nc|ENSG00000048162|Q9Y3C1-3|NOP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7713928222656 2 508.772188 1015.52982 -0.16183 -8.2333E-05 -0.54077 -0.00027513 -0.70259 -0.00035746 508.77196060946466 25.434 0.30985 25.434 25.26 25.57 0 34 14 3 0 0 0 0.42143 1 13021 13021 20.415 0 1 2033400 65580 16027 43634 44623 76573 76573 0.022679645752418764 TPRSLKPSL 9 Unmodified _TPRSLKPSL_ 0 0 0 ENST00000305978.6_1_20:34541962-34542070:-|nuORF ENST00000305978.6_1_20:34541962-34542070:-|nuORF ENST00000305978.6_1_20:34541962-34542070:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8036193847656 2 499.803291 997.59203 1.116 0.00055778 -0.33135 -0.00016561 0.78465 0.00039217 499.80300347766047 32.181 0.40829 28.324 28.086 28.494 -3.8562 52 23 3 0 0 0 0.03568 1 18371 18371 52.268 2.7141 1 43177000 65581 11619 43635 44624 76574 76574 0.09313735714226823 TPRSTVGVAVL 11 Unmodified _TPRSTVGVAVL_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3268432617188 2 550.327131 1098.63971 0.66985 0.00036864 -0.13155 -7.2395E-05 0.5383 0.00029624 550.3270116742036 47.447 0.26419 47.095 46.938 47.203 -0.3526 20 12 2 0 0 0 0.33612 1 25430 25430 24.882 4.467 1 5764100 65582 2675 43636 44625 76575 76575 0.09433389914420331 TPRSTVGVAVL 11 Unmodified _TPRSTVGVAVL_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.8286743164062 2 550.327131 1098.63971 0.93169 0.00051273 -0.54733 -0.00030121 0.38437 0.00021153 550.326828884982 52.685 0.28226 46.951 46.817 47.099 -5.7345 25 15 2 0 0 0 0.12819 1 33236 33236 39.213 12.945 1 35847000 65583 2675 43636 44625 76576 76576 0.09433389914420331 TPRSVEEIL 9 Unmodified _TPRSVEEIL_ 0 0 0 ENSG00000138286|ENST00000242505|FAM149B1;nc|ENSG00000138286|Q96BN6-2|FAM149B1 ENSG00000138286|ENST00000242505|FAM149B1 ENSG00000138286|ENST00000242505|FAM149B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.29052734375 2 522.290214 1042.56587 1.3226 0.0006908 -0.76065 -0.00039728 0.56198 0.00029352 522.289802397512 53.936 0.66692 48.071 47.77 48.437 -5.8653 125 39 4 0 0 0 0.25681 2 34292 34155;34292 19.257 4.4187 1 230310000 65584 5037 43637 44626 76577;76578 76578 0.04629421752088092 TPRSYVGVTL 10 Unmodified _TPRSYVGVTL_ 0 0 0 ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8064575195312 2 546.806031 1091.59751 0.42171 0.00023059 0.38629 0.00021123 0.808 0.00044182 546.8063248702067 49.28 0.24926 48.908 48.755 49.005 -0.37172 27 11 3 0 0 0 0.14688 1 26492 26492 40.239 2.2652 1 4154000 65585 4748 43638 44627 76579 76579 0.05537414506034111 TPRSYVGVTL 10 Unmodified _TPRSYVGVTL_ 0 0 0 ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC MSMS AL20221201_MKP_PDAC_01 4 546.807373046875 2 546.806031 1091.59751 NaN NaN NaN NaN NaN NaN NaN 54.484 1 48.619 48.119 49.119 -5.8653 0 0 0 0.45397 1 34567 34567 28.495 3.5035 1 65586 4748 43638 44627 76580 76580 0.05537414506034111 TPRTNNIELHY 11 Unmodified _TPRTNNIELHY_ 0 0 0 ENSG00000064102|ENST00000261191|INTS13;nc|ENSG00000064102|Q9NVM9-2|INTS13 ENSG00000064102|ENST00000261191|INTS13 ENSG00000064102|ENST00000261191|INTS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.23291015625 3 453.233481 1356.67861 -0.2809 -0.00012731 0.0083874 3.8015E-06 -0.27251 -0.00012351 453.2334951782283 34.316 0.17566 34.316 34.226 34.402 0 15 8 2 0 0 0 0.31498 1 18076 18076 25.997 19.374 1 1918300 65587 868 43639 44628 76581 76581 0.014540704781211389 TPRVPDNSL 9 Unmodified _TPRVPDNSL_ 0 0 0 ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000109079|Q13829-2|TNFAIP1 ENSG00000109079|ENST00000226225|TNFAIP1 ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7668151855469 2 499.766906 997.519259 -0.25261 -0.00012625 0.45114 0.00022546 0.19853 9.9218E-05 499.76712177036126 31.893 0.30391 31.893 31.739 32.043 0 44 14 4 0 0 0 0.0087923 1 16600 16600 103.42 42.062 1 14242000 65588 2627 43640 44629 76582 76582 0.020399819208023473 TPRVPDNSL 9 Unmodified _TPRVPDNSL_ 0 0 0 ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000109079|Q13829-2|TNFAIP1 ENSG00000109079|ENST00000226225|TNFAIP1 ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7666625976562 2 499.766906 997.519259 0.55528 0.00027751 -0.40859 -0.0002042 0.1467 7.3315E-05 499.7668790876838 36.382 0.41115 32.189 31.977 32.388 -4.1928 64 24 3 0 0 0 0.0085366 2 21150 21150;21278 90.135 28.777 1 78873000 65589 2627 43640 44629 76583;76584 76583 0.020399819208023473 TPSAKTAFY 9 Unmodified _TPSAKTAFY_ 0 0 0 REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2550354003906 2 493.2531 984.491647 -0.034458 -1.6997E-05 -0.20725 -0.00010223 -0.24171 -0.00011922 493.25304472125447 43.703 0.2364 43.703 43.583 43.82 0 23 11 3 0 0 0 0.10734 1 23733 23733 32.305 1.6689 1 39533000 + 65590 18572 43641 44630 76585 76585 -0.001219213394392682 TPSAKTAFY 9 Unmodified _TPSAKTAFY_ 0 0 0 REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B REV__nc|ENSG00000107731|Q8IZJ1-2|UNC5B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.2531 984.491647 -0.034458 -1.6997E-05 -0.20725 -0.00010223 -0.24171 -0.00011922 493.25304472125447 43.703 0.2364 43.703 43.583 43.82 0 0 0 NaN 32.305 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 39533000 + 65591 18572 43641 44630 -0.001219213394392682 TPSATRVGNTV 11 Unmodified _TPSATRVGNTV_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7965087890625 2 551.796195 1101.57784 NaN NaN NaN NaN NaN NaN NaN 22.096 1 22.096 21.596 22.596 0 0 0 0 0.83999 1 11227 11227 10.151 0.076642 1 65592 7828 43642 44631 76586 76586 0.031110384952853565 TPSCFDSSTL 10 Unmodified _TPSCFDSSTL_ 0 0 0 REV__nc|ENSG00000147526|O75410-3|TACC1 REV__nc|ENSG00000147526|O75410-3|TACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.228515625 2 529.228965 1056.44338 -0.17815 -9.4282E-05 -0.66114 -0.0003499 -0.83929 -0.00044418 529.2288148137059 41.396 0.3203 41.396 41.218 41.538 0 43 15 4 0 0 0 0.50944 1 22399 22399 15.847 3.3156 1 38029000 + 65593 20896 43643 44632 76587 76587 -0.08258783041628703 TPSDGRPEL 9 Unmodified _TPSDGRPEL_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;nc|ENSG00000125733|Q15642-5|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2427368164062 2 486.243264 970.471974 -0.31294 -0.00015217 0.47556 0.00023124 0.16262 7.9071E-05 486.24351658285246 25.969 0.22511 25.969 25.862 26.087 0 17 10 2 0 0 0 0.1685 1 13321 13321 26.268 7.0112 1 1614100 65594 3875 43644 44633 76588 76588 -0.01444297350190027 TPSDIFMVM 9 2 Oxidation (M) _TPSDIFM(Oxidation (M))VM(Oxidation (M))_ TPSDIFM(1)VM(1) TPSDIFM(51)VM(51) 0 0 2 ENSG00000132356|ENST00000397128|PRKAA1;nc|ENSG00000132356|Q13131-2|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 ENSG00000132356|ENST00000397128|PRKAA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7377319335938 2 536.738111 1071.46167 0.19771 0.00010612 0.08554 4.5913E-05 0.28325 0.00015203 536.7386880213808 58.913 0.35402 58.422 58.271 58.625 -0.49079 39 16 3 0 0 0 0.038285 1 32016 32016 50.855 33.913 1 2667700 65595 4396 43645 44634 76589 76589 797;798 -0.07120364391266776 TPSDPRRRL 9 Unmodified _TPSDPRRRL_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;CTNND1|p.R919Hfs*5|1|0.11|ENSG00000198561|chr11:57815448-57815448|G/-|frameshift_variant;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5440979003906 3 366.54399 1096.61014 -0.01389 -5.0913E-06 1.0386 0.0003807 1.0247 0.00037561 366.54442550247256 16.421 0.24023 16.426 16.275 16.515 0.0050564 29 16 3 0 0 0 0.27545 1 8219 8219 18.373 0 1 923350 65596 222 43646 44635 76590 76590 0.06569870688940682 TPSDPRRRL 9 Unmodified _TPSDPRRRL_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;CTNND1|p.R919Hfs*5|1|0.11|ENSG00000198561|chr11:57815448-57815448|G/-|frameshift_variant;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5441284179688 3 366.54399 1096.61014 0.94017 0.00034461 -0.57836 -0.000212 0.36181 0.00013262 366.54380877483567 17.006 0.25639 14.419 14.282 14.538 -2.5866 102 43 3 0 0 0 0.091924 2 8896 8792;8896 34.932 7.7088 1 12992000 65597 222 43646 44635 76591;76592 76592 0.06569870688940682 TPSDPRRRL 9 Unmodified _TPSDPRRRL_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;CTNND1|p.R919Hfs*5|1|0.11|ENSG00000198561|chr11:57815448-57815448|G/-|frameshift_variant;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.54399 1096.61014 -0.57077 -0.00020921 0.74333 0.00027246 0.17257 6.3253E-05 366.5442691699664 16.791 0.10825 16.792 16.733 16.841 0.0010548 0.18309 -0.0001776 NaN 18.373 44 31 2 NaN NaN NaN NaN 0 NaN NaN 0 387550 65598 222 43646 44635 0.06569870688940682 TPSDVFKQY 9 Unmodified _TPSDVFKQY_ 0 0 0 ENSG00000214013|ENST00000318010|GANC;ENST00000567421.1_1_15:42570725-42619667:+|nuORF ENSG00000214013|ENST00000318010|GANC ENSG00000214013|ENST00000318010|GANC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.77001953125 2 542.769114 1083.52368 0.5822 0.000316 1.0742 0.00058304 1.6564 0.00089904 542.770013346499 42.995 0.17493 42.98 42.888 43.063 -0.015671 13 7 2 0 0 0 0.14 1 23062 23062 29.082 1.4528 1 2706200 65599 10474 43647 44636 76593 76593 -0.014745536562713824 TPSDVKELVL 10 Unmodified _TPSDVKELVL_ 0 0 0 ENSG00000140350|ENST00000465139|ANP32A;ENST00000560832.1_1_15:35529508-35529652:+|nuORF;ENST00000495420.5_1_15:69079601-69113141:-|nuORF ENSG00000140350|ENST00000465139|ANP32A ENSG00000140350|ENST00000465139|ANP32A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.8135375976562 2 550.813522 1099.61249 NaN NaN NaN NaN NaN NaN NaN 53.632 1 53.632 53.132 54.132 0 0 0 0 0.050901 1 29741 29741 57.108 30.839 1 65600 5226 43648 44637 76594 76594 0.06666861583380523 TPSEPHPVL 9 Unmodified _TPSEPHPVL_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7618103027344 2 488.758549 975.502546 -0.012555 -6.1362E-06 1.3224 0.00064631 1.3098 0.00064017 488.75926116883466 35.626 0.33711 35.626 35.479 35.816 0 50 16 4 0 0 0 0.010877 2 18812 18812;18915 77.984 51.101 1 59636000 65601 10096 43649 44638 76595;76596 76595 0.013814810348435458 TPSEPHPVL 9 Unmodified _TPSEPHPVL_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684672-39685536:+|nuORF ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MSMS AL20221201_MKP_PDAC_01 4 488.7585144042969 2 488.758549 975.502546 NaN NaN NaN NaN NaN NaN NaN 39.773 1 35.244 34.744 35.744 -4.5294 0 0 0 0.015254 1 23654 23654 109.63 67.535 1 65602 10096 43649 44638 76597 76597 0.013814810348435458 TPSEVSTSL 9 Unmodified _TPSEVSTSL_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7322998046875 2 460.732197 919.449842 0.70335 0.00032405 -0.054078 -2.4916E-05 0.64927 0.00029914 460.73212207698225 43.302 0.42066 38.538 38.304 38.724 -4.7648 41 29 2 0 0 0 0.0090851 2 26347 26202;26347 85.357 27.885 1 20221000 65603 7922 43650 44639 76598;76599 76599 -0.013105218185955891 TPSFVKYY 8 Unmodified _TPSFVKYY_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7565307617188 2 502.758018 1003.50148 0.25434 0.00012787 -1.3811 -0.00069436 -1.1268 -0.00056649 502.75727437948996 79.517 0.30101 79.572 79.419 79.72 0.05497 17 11 2 0 0 0 0.76266 1 43962 43962 11.64 2.2572 1 1430700 + 65604 21482 43651 44640 76600 76600 -0.00012733334051517886 TPSFVKYY 8 Unmodified _TPSFVKYY_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.758018 1003.50148 0.56639 0.00028476 -1.6177 -0.0008133 -1.0513 -0.00052854 502.7570952112217 80.064 0.30567 79.575 79.428 79.734 -0.48932 0.0012259 -9.3849E-05 NaN 11.64 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 707850 + 65605 21482 43651 44640 -0.00012733334051517886 TPSFVKYY 8 Unmodified _TPSFVKYY_ 0 0 0 REV__ENSG00000159433|ENST00000290607|STARD9 REV__ENSG00000159433|ENST00000290607|STARD9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.758018 1003.50148 0.25434 0.00012787 -1.3811 -0.00069436 -1.1268 -0.00056649 502.75727437948996 79.517 0.30101 79.572 79.419 79.72 0.05497 -0.0012259 0.00014404 NaN 11.64 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1430700 + 65606 21482 43651 44640 -0.00012733334051517886 TPSGIPDF 8 Unmodified _TPSGIPDF_ 0 0 0 ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF;nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3 ENST00000531753.5_1_11:224237-233443:-|nuORF ENST00000531753.5_1_11:224237-233443:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 833.4037475585938 1 833.40396 832.396684 0.10509 8.7585E-05 -0.91482 -0.00076242 -0.80973 -0.00067483 833.4031025556815 72.165 0.27333 71.689 71.499 71.772 -0.47609 15 11 2 0 0 0 0.24071 1 39471 39471 63.563 12.708 1 687270 65607 5389 43652 44641 76601 76601 -0.02621854810615787 TPSGIPDF 8 Unmodified _TPSGIPDF_ 0 0 0 ENST00000531753.5_1_11:224237-233443:-|nuORF;ENST00000528702.5_1_11:226003-233443:-|nuORF;ENST00000529055.5_1_11:224232-236273:-|nuORF;nc|ENSG00000142082|Q9NTG7-2|SIRT3;ENSG00000142082|ENST00000382743|SIRT3 ENST00000531753.5_1_11:224237-233443:-|nuORF ENST00000531753.5_1_11:224237-233443:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 833.4039916992188 1 833.40396 832.396684 0.86436 0.00072036 -0.3353 -0.00027944 0.52905 0.00044092 833.4032579025319 80.281 0.38853 74.105 73.908 74.296 -6.1757 28 22 2 0 0 0 0.19792 1 52635 52635 70.716 19.86 1 11950000 65608 5389 43652 44641 76602 76602 -0.02621854810615787 TPSHAMKITY 10 Oxidation (M) _TPSHAM(Oxidation (M))KITY_ TPSHAM(1)KITY TPSHAM(59)KITY 0 0 1 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7896118164062 2 582.789524 1163.56449 1.0422 0.00060738 0.16642 9.6989E-05 1.2086 0.00070436 582.7897379814659 21.772 0.42953 19.037 18.844 19.274 -2.7348 56 23 3 0 0 0 0.04848 2 11744 11635;11744 59.052 36.316 1 2730300 65609 3902 43653 44642 76603;76604 76604 699 -0.010745356083134538 TPSHAMKITY 10 Unmodified _TPSHAMKITY_ 0 0 0 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5307006835938 3 383.53047 1147.56958 1.4651 0.0005619 -0.90451 -0.00034691 0.56056 0.00021499 383.5301495884221 32.257 0.47359 28.4 28.161 28.635 -3.8562 71 27 3 0 0 0 0.62068 2 18414 18286;18414 11.518 3.6794 1 73886000 65610 3902 43653 44643 76605;76606 76606 0.0016976825429537712 TPSHAMKITY 10 Unmodified _TPSHAMKITY_ 0 0 0 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7920532226562 2 574.792066 1147.56958 1.1085 0.00063714 -0.67479 -0.00038787 0.43368 0.00024928 574.7918010484924 32.247 0.36982 28.391 28.179 28.549 -3.8562 29 21 2 0 0 0 5.8871E-08 1 18325 18325 143.21 95.465 1 18456000 65611 3902 43653 44643 76607 76607 0.0016976825429537712 TPSIPLESP 9 Unmodified _TPSIPLESP_ 0 0 0 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2981262207031 2 470.752933 939.491313 0.53848 0.00025349 -3.9007 -0.0018363 -3.3623 -0.0015828 470.75148782135375 57.222 0.19421 56.732 56.622 56.816 -0.48974 11 8 2 0 0 0 0.20139 1 31059 31059 10.824 0 1 764600 + 65612 20228 43654 44644 76608 76608 0.019146589407114334 TPSIPLESP 9 Unmodified _TPSIPLESP_ 0 0 0 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.752933 939.491313 0.36546 0.00017204 -3.4071 -0.0016039 -3.0417 -0.0014319 470.7513747510422 56.748 0.27042 56.748 56.564 56.835 0 0.0078084 5.4579E-05 NaN 6.7232 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2135400 + 65613 20228 43654 44644 0.019146589407114334 TPSKGVLFY 9 Unmodified _TPSKGVLFY_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2798767089844 2 506.279118 1010.54368 0.35243 0.00017843 0.63622 0.0003221 0.98865 0.00050053 506.27938842502624 50.725 0.7108 50.311 49.95 50.661 -0.41351 82 34 5 0 0 0 0.021948 2 27355 27253;27355 61.602 19.507 1 27931000 65614 7318 43655 44645 76609;76610 76610 0.038832420743119656 TPSKGVLFY 9 Unmodified _TPSKGVLFY_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2797546386719 2 506.279118 1010.54368 1.4336 0.00072583 -1.0964 -0.00055511 0.3372 0.00017072 506.2784601305317 50.307 0.50894 50.259 49.967 50.475 -0.048824 70 24 4 0 0 0 0.021948 1 27217 27217 61.602 19.507 1 21764000 65615 7318 43655 44645 76611 76611 0.038832420743119656 TPSKGVLFY 9 Unmodified _TPSKGVLFY_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2801513671875 2 506.279118 1010.54368 1.069 0.00054123 0.4352 0.00022033 1.5042 0.00076156 506.27934793353717 55.47 0.68379 49.549 49.285 49.969 -5.9211 117 41 4 0 0 0 0.015688 3 35462 35190;35331;35462 67.838 25.744 1 144680000 65616 7318 43655 44645 76612;76613;76614 76614 0.038832420743119656 TPSLESHW 8 Unmodified _TPSLESHW_ 0 0 0 REV__ENSG00000110427|ENST00000658780|KIAA1549L REV__ENSG00000110427|ENST00000658780|KIAA1549L MSMS AL20221201_MKP_PDAC_01 4 478.7279663085938 2 478.727249 955.439946 NaN NaN NaN NaN NaN NaN NaN 60.044 1 53.929 53.429 54.429 -6.1147 0 0 0 0.93066 1 38612 38612 14.582 0 1 + 65617 18708 43656 44646 76615 76615 -0.03955665033333844 TPSLIRAGSRV 11 Unmodified _TPSLIRAGSRV_ 0 0 0 ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000472782.1_1_2:176044798-176046391:-|nuORF ENSG00000154518|ENST00000284727|ATP5MC3 ENSG00000154518|ENST00000284727|ATP5MC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2318420410156 3 386.231412 1155.67241 -0.23522 -9.085E-05 -0.39152 -0.00015122 -0.62675 -0.00024207 386.23108880141126 31.118 0.21025 31.148 31.037 31.247 0.030106 19 8 3 0 0 0 0.43683 1 16281 16281 19.615 7.984 1 4334600 65618 6331 43657 44647 76616 76616 0.10079597037270105 TPSLIRAGSRV 11 Unmodified _TPSLIRAGSRV_ 0 0 0 ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000497075.5_1_2:176043783-176046391:-|nuORF;ENST00000472782.1_1_2:176044798-176046391:-|nuORF ENSG00000154518|ENST00000284727|ATP5MC3 ENSG00000154518|ENST00000284727|ATP5MC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2318115234375 3 386.231412 1155.67241 1.2557 0.000485 0.1948 7.5239E-05 1.4505 0.00056024 386.2314607220375 35.128 0.35207 31.033 30.856 31.208 -4.0951 34 20 2 0 0 0 0.51719 1 20320 20320 15.538 5.2232 1 9684600 65619 6331 43657 44647 76617 76617 0.10079597037270105 TPSLLRDVF 9 Unmodified _TPSLLRDVF_ 0 0 0 nc|ENSG00000015475|P55957-4|BID;ENSG00000015475|ENST00000622694|BID;nc|ENSG00000015475|P55957-2|BID nc|ENSG00000015475|P55957-4|BID nc|ENSG00000015475|P55957-4|BID MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.294921875 2 524.295299 1046.57605 0.31544 0.00016538 0.076752 4.0241E-05 0.39219 0.00020562 524.2958336976913 70.87 0.26088 70.392 70.286 70.547 -0.47735 25 11 3 0 0 0 0.085319 1 38767 38767 36.506 5.8697 1 1363800 65620 495 43658 44648 76618 76618 0.054620294773030764 TPSLLRDVF 9 Unmodified _TPSLLRDVF_ 0 0 0 nc|ENSG00000015475|P55957-4|BID;ENSG00000015475|ENST00000622694|BID;nc|ENSG00000015475|P55957-2|BID nc|ENSG00000015475|P55957-4|BID nc|ENSG00000015475|P55957-4|BID MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.295299 1046.57605 0.60846 0.00031901 1.1196 0.00058699 1.728 0.000906 524.2967173856439 70.377 0.23495 70.413 70.291 70.526 0.035515 0.010245 0.00088089 NaN 36.506 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1213600 65621 495 43658 44648 0.054620294773030764 TPSLVKSTSQL 11 Unmodified _TPSLVKSTSQL_ 0 0 0 ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8291015625 2 580.829703 1159.64485 0.27825 0.00016161 -0.25786 -0.00014977 0.020392 1.1844E-05 580.8294415536301 39.497 0.23476 39.497 39.381 39.616 0 23 10 3 0 0 0 5.665699999999999E-21 1 21176 21176 150.62 114.11 1 5780000 65622 4700 43659 44649 76619 76619 0.07141648986407745 TPSLVKSTSQL 11 Unmodified _TPSLVKSTSQL_ 0 0 0 ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.82958984375 2 580.829703 1159.64485 0.024136 1.4019E-05 -0.22032 -0.00012797 -0.19619 -0.00011395 580.8295801239079 39.764 0.3209 39.467 39.308 39.629 -0.29716 38 15 3 0 0 0 8.1465E-63 2 20955 20955;21058 208.59 156.96 1 21045000 65623 4700 43659 44649 76620;76621 76620 0.07141648986407745 TPSLVKSTSQL 11 Unmodified _TPSLVKSTSQL_ 0 0 0 ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8306884765625 2 580.829703 1159.64485 0.73282 0.00042564 0.13104 7.6112E-05 0.86386 0.00050176 580.8293692669386 39.443 0.24711 39.455 39.281 39.528 0.011452 25 11 3 0 0 0 1.3203E-08 1 20985 20985 107.1 68.924 1 3233900 65624 4700 43659 44649 76622 76622 0.07141648986407745 TPSLVKSTSQL 11 Unmodified _TPSLVKSTSQL_ 0 0 0 ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 ENSG00000135390|ENST00000394349|ATP5MC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.8304443359375 2 580.829703 1159.64485 0.47406 0.00027535 -0.12353 -7.1747E-05 0.35053 0.0002036 580.8296755947686 45.045 0.45488 40.193 39.959 40.414 -4.852 93 29 4 0 0 0 1.1867E-08 1 27589 27589 108.26 78.421 1 111610000 65625 4700 43659 44649 76623 76623 0.07141648986407745 TPSLWELVF 9 Unmodified _TPSLWELVF_ 0 0 0 ENST00000355621.7_1_7:129471154-129471307:-|nuORF ENST00000355621.7_1_7:129471154-129471307:-|nuORF ENST00000355621.7_1_7:129471154-129471307:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2417602539062 2 546.292225 1090.5699 0.19293 0.00010539 2.4354 0.0013304 2.6283 0.0014358 546.2924665838265 40.032 0.097557 40.032 39.952 40.049 0 6 4 2 0 0 0 0.19613 1 21470 21470 7.9102 3.9658 1 600470 65626 12079 43660 44650 76624 76624 0.028235112458105505 TPSNHYVKMF 10 Unmodified _TPSNHYVKMF_ 0 0 0 REV__ENST00000417747.1_1_11:107274792-107274966:-|nuORF REV__ENST00000417747.1_1_11:107274792-107274966:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2969970703125 2 612.297516 1222.58048 0.8732 0.00053466 -1.3454 -0.00082381 -0.47224 -0.00028915 612.296644082685 52.325 0.26148 52.266 52.107 52.368 -0.058918 19 12 2 0 0 0 0.52888 1 28325 28325 14.838 0 1 2021800 + 65627 26791 43661 44651 76625 76625 -0.021908293714204774 TPSNIAIVL 9 Unmodified _TPSNIAIVL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2802124023438 2 464.279118 926.543683 0.96887 0.00044983 1.1878 0.00055147 2.1567 0.0010013 464.27966533412047 73.677 0.28734 73.677 73.568 73.856 0 19 11 2 0 0 0 0.36964 1 41033 41033 13.906 0 1 741980 65628 1752;5267 43662 44652 76626 76626 0.07747242074310634 TPSNIAIVL 9 Unmodified _TPSNIAIVL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 927.5511474609375 1 927.550959 926.543683 0.6259 0.00058055 0.89473 0.0008299 1.5206 0.0014105 927.5516510338122 74.131 0.37733 73.655 73.487 73.864 -0.47588 34 15 3 0 0 0 0.0085164 2 40628 40524;40628 99.799 31.718 1 3383900 65629 1752;5267 43662 44652 76627;76628 76628 0.07747242074310634 TPSNIAIVL 9 Unmodified _TPSNIAIVL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.5491333007812 1 927.550959 926.543683 0.7011 0.00065031 0.10239 9.4973E-05 0.80349 0.00074528 927.5505387273303 80.757 0.41673 74.581 74.334 74.75 -6.1757 35 22 2 0 0 0 0.0036082 3 52927 52927;53045;53057 123.45 34.547 1 14423000 65630 1752;5267 43662 44652 76629;76630;76631 76629 0.07747242074310634 TPSNIAIVL 9 Unmodified _TPSNIAIVL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 927.550959 926.543683 0.69519 0.00064483 1.3758 0.0012761 2.071 0.0019209 927.5525146994976 73.726 0.26146 73.726 73.568 73.83 0 0.035719 0.00027103 NaN 99.799 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 756990 65631 1752;5267 43662 44652 0.07747242074310634 TPSNIAIVL 9 Unmodified _TPSNIAIVL_ 0 0 0 nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000466097.1_1_22:38042800-38046733:+|nuORF nc|ENSG00000140750|Q68EM7-2|ARHGAP17;ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 464.279118 926.543683 0.58139 0.00026993 0.75208 0.00034918 1.3335 0.0006191 464.27942418939824 74.175 0.37733 73.699 73.487 73.864 -0.47588 0.011321 -0.00020009 NaN 13.906 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 2699800 65632 1752;5267 43662 44652 0.07747242074310634 TPSNQDPWF 9 Unmodified _TPSNQDPWF_ 0 0 0 REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2432250976562 2 546.243264 1090.47197 0.29892 0.00016328 0.61324 0.00033498 0.91216 0.00049826 546.2437456066134 45.368 0.35884 40.413 40.254 40.613 -4.9549 44 24 2 0 0 0 0.37804 1 27758 27758 13.508 0.46542 1 38127000 + 65633 18256 43663 44653 76632 76632 -0.0696429735021411 TPSPARPAL 9 Unmodified _TPSPARPAL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2608642578125 2 455.261259 908.507966 -0.18049 -8.2171E-05 -0.92142 -0.00041949 -1.1019 -0.00050166 455.26111819624987 29.831 0.17503 29.831 29.777 29.953 0 15 10 3 0 0 0 0.06294 1 15509 15509 41.84 5.7126 1 1470200 65634 7618 43664 44654 76633 76633 0.050052046173163944 TPSPARPAL 9 Unmodified _TPSPARPAL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2616271972656 2 455.261259 908.507966 1.1593 0.00052778 -0.43284 -0.00019706 0.72645 0.00033073 455.26113522119937 33.542 0.36321 29.556 29.351 29.714 -3.9853 29 20 2 0 0 0 0.020973 1 19198 19198 62.573 5.1013 1 14121000 65635 7618 43664 44654 76634 76634 0.050052046173163944 TPSPARPAL 9 Unmodified _TPSPARPAL_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 455.261259 908.507966 0.55185 0.00025124 -0.010917 -4.9701E-06 0.54094 0.00024627 455.2608831935623 29.869 0.12196 29.788 29.746 29.868 -0.080431 0.063034 0.00044772 NaN 62.573 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1542500 65636 7618 43664 44654 0.050052046173163944 TPSPATTTF 9 Unmodified _TPSPATTTF_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR;ENST00000505366.1_1_5:32406854-32444764:-|nuORF ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS AL20221201_MKP_PDAC_01 4 461.7310180664062 2 461.729458 921.444362 NaN NaN NaN NaN NaN NaN NaN 46.182 1 41.228 40.728 41.728 -4.9549 0 0 0 0.23581 1 28479 28479 28.487 5.3384 1 65637 783 43665 44655 76635 76635 -0.01950200610428965 TPSPEIVKY 9 Unmodified _TPSPEIVKY_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2822265625 2 517.281857 1032.54916 0.62308 0.00032231 0.18045 9.3344E-05 0.80353 0.00041565 517.2819192800292 38.916 0.5392 38.916 38.556 39.096 0 65 24 5 0 0 0 0.0032147 2 20756 20756;20877 125.53 64.172 1 71868000 65638 5007 43666 44656 76636;76637 76636 0.03418920866147346 TPSPEIVKY 9 Unmodified _TPSPEIVKY_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.28173828125 2 517.281857 1032.54916 -0.099369 -5.1402E-05 0.48772 0.00025229 0.38835 0.00020089 517.2818050119395 39.238 0.26767 38.951 38.812 39.08 -0.28687 20 12 2 0 0 0 0.0087807 1 20690 20690 106.94 35.807 1 5857600 65639 5007 43666 44656 76638 76638 0.03418920866147346 TPSPEIVKY 9 Unmodified _TPSPEIVKY_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1;ENST00000260604.8_1_2:55870335-55906871:-|nuORF ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.2792358398438 2 517.281857 1032.54916 0.53682 0.00027769 -3.3609 -0.0017385 -2.8241 -0.0014608 517.2800489639435 44.224 0.71626 39.372 38.898 39.614 -4.852 101 49 3 0 0 0 0.040474 1 26871 26871 61.602 17.744 1 117320000 65640 5007 43666 44656 76639 76639 0.03418920866147346 TPSPIIQQL 9 Unmodified _TPSPIIQQL_ 0 0 0 nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.789794921875 2 498.78985 995.565146 0.35045 0.0001748 0.12297 6.1334E-05 0.47342 0.00023614 498.7898778791689 61.445 0.40834 61.445 61.254 61.663 0 45 18 3 0 0 0 0.013323 2 34324 34223;34324 71.134 13.662 1 7797900 65641 7343 43667 44657 76640;76641 76641 0.06718627103043673 TPSPIIQQL 9 Unmodified _TPSPIIQQL_ 0 0 0 nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7898864746094 2 498.78985 995.565146 0.3344 0.0001668 -0.020778 -1.0364E-05 0.31363 0.00015643 498.7898018129764 61.96 0.41758 61.473 61.243 61.66 -0.48764 50 19 3 0 0 0 0.011968 2 33778 33682;33778 74.929 13.572 1 15688000 65642 7343 43667 44657 76642;76643 76643 0.06718627103043673 TPSPIIQQL 9 Unmodified _TPSPIIQQL_ 0 0 0 nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 nc|ENSG00000165480|Q8IX90-3|SKA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7896118164062 2 498.78985 995.565146 0.96739 0.00048252 0.085849 4.282E-05 1.0532 0.00052535 498.7898434410257 68.624 0.50011 62.448 62.205 62.705 -6.1757 65 28 3 0 0 0 0.0090948 2 44664 44664;44800 85.272 3.7954 1 65023000 65643 7343 43667 44657 76644;76645 76644 0.06718627103043673 TPSPPEVVY 9 Unmodified _TPSPPEVVY_ 0 0 0 ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF ENST00000555795.1_1_14:75988823-76013011:+|nuORF ENST00000555795.1_1_14:75988823-76013011:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7535095214844 2 494.752933 987.491313 0.41232 0.000204 0.19592 9.6931E-05 0.60824 0.00030093 494.75296151822425 49.219 0.57811 49.219 48.932 49.51 0 77 27 4 0 0 0 0.0090851 3 26974 26974;27086;27204 85.357 47.206 1 16558000 65644 6431 43668 44658 76646;76647;76648 76646 -0.0029334105928455756 TPSPPEVVY 9 Unmodified _TPSPPEVVY_ 0 0 0 ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF ENST00000555795.1_1_14:75988823-76013011:+|nuORF ENST00000555795.1_1_14:75988823-76013011:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.4990844726562 1 988.498589 987.491313 0.29139 0.00028803 -0.051162 -5.0573E-05 0.24022 0.00023746 988.4985102628664 49.245 0.39889 49.245 49.042 49.441 0 30 18 2 0 0 0 0.011968 1 27137 27137 74.929 34.972 1 2750500 65645 6431 43668 44658 76649 76649 -0.0029334105928455756 TPSPPEVVY 9 Unmodified _TPSPPEVVY_ 0 0 0 ENST00000555795.1_1_14:75988823-76013011:+|nuORF;ENSG00000156127|ENST00000286639|BATF ENST00000555795.1_1_14:75988823-76013011:+|nuORF ENST00000555795.1_1_14:75988823-76013011:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7538757324219 2 494.752933 987.491313 0.58873 0.00029128 0.9676 0.00047872 1.5563 0.00077 494.753431392365 56.743 0.54641 50.766 50.428 50.975 -5.9769 68 31 3 0 0 0 0.016184 3 36250 36119;36250;36386 67.344 31.3 1 59563000 65646 6431 43668 44658 76650;76651;76652 76651 -0.0029334105928455756 TPSPPLRAA 9 Unmodified _TPSPPLRAA_ 0 0 0 REV__ENSG00000196814|ENST00000361171|MVB12B REV__ENSG00000196814|ENST00000361171|MVB12B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2608337402344 2 455.261259 908.507966 0.55185 0.00025124 -0.010917 -4.9701E-06 0.54094 0.00024627 455.2608831935623 29.869 0.12196 29.788 29.746 29.868 -0.080431 7 4 2 0 0 0 0.30202 1 15500 15500 17.113 0 1 1542500 + 65647 23871 43669 44659 76653 76653 0.050052046173163944 TPSPPPEHGP 10 Unmodified _TPSPPPEHGP_ 0 0 0 ENST00000421896.1_1_6:7481658-7482147:-|nuORF ENST00000421896.1_1_6:7481658-7482147:-|nuORF ENST00000421896.1_1_6:7481658-7482147:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7279357910156 2 508.245806 1014.47706 -0.042225 -2.1461E-05 1.6224 0.00082457 1.5802 0.00080311 508.24647575375485 22.347 0.28292 22.347 22.224 22.507 0 14 13 2 0 0 0 0.23634 1 11390 11390 6.7232 0 1 458320 65648 13113 43670 44660 76654 76654 -0.029599934875591316 TPSPTFFTP 9 Unmodified _TPSPTFFTP_ 0 0 0 ENST00000378509.8_1_7:133975980-133976244:-|nuORF ENST00000378509.8_1_7:133975980-133976244:-|nuORF ENST00000378509.8_1_7:133975980-133976244:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7480163574219 2 497.74765 993.480748 0.45899 0.00022846 -0.36852 -0.00018343 0.090475 4.5033E-05 497.74744258208364 66.501 0.26591 66.501 66.372 66.637 0 19 11 2 0 0 0 0.23158 1 37086 37086 20.454 1.1966 1 1707600 65649 12547 43671 44661 76655 76655 -0.016253237137220822 TPSPTRYSL 9 Unmodified _TPSPTRYSL_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2695007324219 2 511.269281 1020.52401 -0.56452 -0.00028862 0.25145 0.00012856 -0.31307 -0.00016006 511.2693810300127 35.412 0.18106 35.19 35.087 35.268 -0.2224 12 7 2 0 0 0 0.10247 1 18550 18550 32.786 3.7041 1 1843700 65650 6246 43672 44662 76656 76656 0.0145686606357458 TPSPVRLHAL 10 Unmodified _TPSPVRLHAL_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-4|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2177124023438 3 364.217102 1089.62948 -0.002185 -7.9582E-07 0.78564 0.00028614 0.78346 0.00028535 364.2174348677159 38.366 0.26543 38.08 37.93 38.196 -0.28687 39 11 4 0 0 0 0.40136 1 20177 20177 14.218 6.7411 1 3265400 65651 4201;16644 43673 44663 76657 76657 0.0882482697982141 TPSPVRLHAL 10 Unmodified _TPSPVRLHAL_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-4|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2176208496094 3 364.217102 1089.62948 -0.06822 -2.4847E-05 0.74798 0.00027243 0.67976 0.00024758 364.2174514857162 37.941 0.27433 37.958 37.816 38.09 0.01704 30 12 3 0 0 0 0.20962 1 20151 20151 28.234 19.257 1 6113500 65652 4201;16644 43673 44663 76658 76658 0.0882482697982141 TPSPVRLHAL 10 Unmodified _TPSPVRLHAL_ 0 0 0 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000130305|Q96P11|NSUN5;ENSG00000130305|ENST00000438747|NSUN5;nc|ENSG00000130305|Q96P11-4|NSUN5;nc|ENSG00000290831|Q63ZY6-4|NSUN5P2;nc|ENSG00000290831|Q63ZY6-5|NSUN5P2;nc|ENSG00000290831|Q63ZY6|NSUN5P2;ENST00000444583.6_1_7:72418925-72425243:-|nuORF;ENST00000388955.8_1_7:72418925-72423926:-|nuORF;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1;nc|ENSG00000291151|Q3KNT7-3|NSUN5P1;nc|ENSG00000291151|Q3KNT7|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5;nc|ENSG00000291151|Q3KNT7-2|NSUN5P1 nc|ENSG00000130305|Q96P11-5|NSUN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2174377441406 3 364.217102 1089.62948 1.6211 0.00059044 0.14696 5.3524E-05 1.7681 0.00064397 364.21728204245693 42.516 0.31984 37.832 37.632 37.952 -4.6846 39 21 2 0 0 0 0.20962 1 25718 25718 22.775 9.9024 1 25808000 65653 4201;16644 43673 44663 76659 76659 0.0882482697982141 TPSPYGLSY 9 Unmodified _TPSPYGLSY_ 0 0 0 nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44 nc|ENSG00000006740|Q17R89-2|ARHGAP44 nc|ENSG00000006740|Q17R89-2|ARHGAP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7369689941406 2 492.737283 983.460012 -0.029252 -1.4413E-05 0.31377 0.00015461 0.28452 0.00014019 492.73746094336616 43.559 0.29042 43.559 43.359 43.649 0 17 13 2 0 0 0 0.14602 1 23643 23643 28.487 0 1 9326500 65654 348 43674 44664 76660 76660 -0.03237914093369909 TPSQIGVIL 9 Unmodified _TPSQIGVIL_ 0 0 0 ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF ENSG00000110700|ENST00000525634|RPS13 ENSG00000110700|ENST00000525634|RPS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2787170410156 2 464.279118 926.543683 0.032197 1.4948E-05 0.086898 4.0345E-05 0.11909 5.5293E-05 464.279190980592 70.365 0.3101 69.886 69.673 69.983 -0.47903 31 14 3 0 0 0 0.032796 2 38426 38426;38534 53.833 13.883 1 2612800 65655 2732 43675 44665 76661;76662 76661 0.07747242074333371 TPSQIGVIL 9 Unmodified _TPSQIGVIL_ 0 0 0 ENSG00000110700|ENST00000525634|RPS13;ENST00000526895.5_1_11:17095982-17099246:-|nuORF ENSG00000110700|ENST00000525634|RPS13 ENSG00000110700|ENST00000525634|RPS13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 927.5516967773438 1 927.550959 926.543683 0.07953 7.3768E-05 1.3573 0.001259 1.4369 0.0013328 927.5510963353393 70.372 0.17647 69.893 69.758 69.934 -0.47903 11 7 2 0 0 0 0.0086722 1 38484 38484 88.954 14.025 1 895810 65656 2732 43675 44665 76663 76663 0.07747242074333371 TPSQPLPTY 9 Unmodified _TPSQPLPTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2593994140625 2 502.258382 1002.50221 0.24728 0.0001242 -0.4094 -0.00020562 -0.16212 -8.1427E-05 502.25810704823505 43.7 0.35402 43.7 43.526 43.88 0 59 18 4 0 0 0 0.0071894 2 23685 23685;23798 111.29 71.33 1 356000000 65657 8367 43676 44666 76664;76665 76664 0.0010606131497752358 TPSQPLPTY 9 Unmodified _TPSQPLPTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1003.038879394531 1 1003.50949 1002.50221 -0.29788 -0.00029893 -0.36121 -0.00036248 -0.65909 -0.0006614 1003.5087627374139 43.716 0.31722 43.716 43.545 43.863 0 32 16 3 0 0 0 0.0033077 1 23839 23839 125.04 77.289 1 101600000 65658 8367 43676 44666 76666 76666 0.0010606131497752358 TPSQPLPTY 9 Unmodified _TPSQPLPTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2581787109375 2 502.258382 1002.50221 -0.38676 -0.00019425 0.54032 0.00027138 0.15356 7.7128E-05 502.25861205321945 44.036 0.12723 43.72 43.629 43.756 -0.31585 11 8 2 0 0 0 0.0030184 1 23459 23459 126.57 76.633 1 35969000 65659 8367 43676 44666 76667 76667 0.0010606131497752358 TPSQPLPTY 9 Unmodified _TPSQPLPTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2586364746094 2 502.258382 1002.50221 1.1488 0.00057701 -1.1922 -0.00059877 -0.043316 -2.1756E-05 502.2582395941297 50.606 0.68144 45.067 44.725 45.406 -5.5391 87 42 3 0 0 0 0.009483 3 31827 31697;31827;31959 81.89 41.933 1 703470000 65660 8367 43676 44666 76668;76669;76670 76669 0.0010606131497752358 TPSQYRFV 8 Unmodified _TPSQYRFV_ 0 0 0 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 ENSG00000088179|ENST00000263708|PTPN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.8038635253906 2 499.258717 996.50288 0.14137 7.0581E-05 0.31795 0.00015874 0.45932 0.00022932 499.2588909097453 28.97 0.27997 29.001 28.847 29.127 0.030106 29 11 4 0 0 0 8.7369 1 15041 15041 14.582 2.0501 1 23515000 65661 1479 43677 44667 76671 76671 0.0044890075471357704 TPSREQDAAQ 10 Unmodified _TPSREQDAAQ_ 0 0 0 nc|ENSG00000172403|Q9UMS6-5|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 nc|ENSG00000172403|Q9UMS6-5|SYNPO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2606201171875 2 551.759809 1101.50507 -0.2474 -0.0001365 -1.9157 -0.001057 -2.1631 -0.0011935 551.7577691182896 26.888 0.35404 26.888 26.658 27.012 0 27 16 3 0 0 0 0.6785 1 13876 13876 5.2969 0.54088 1 788480 65662 8213 43678 44668 76672 76672 -0.041627152981618565 TPSRIADSF 9 Unmodified _TPSRIADSF_ 0 0 0 nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2528076171875 2 497.253631 992.49271 0.43429 0.00021595 -0.67406 -0.00033518 -0.23977 -0.00011923 497.2532348420497 36.117 0.23224 36.117 35.975 36.207 0 21 11 3 0 0 0 0.0099157 1 19121 19121 80.676 16.716 1 7137700 65663 16599 43679 44669 76673 76673 -0.003837069705241447 TPSRKGLVL 9 Unmodified _TPSRKGLVL_ 0 0 0 ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3 ENST00000580997.1_1_17:7468099-7469096:+|nuORF ENST00000580997.1_1_17:7468099-7469096:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.8061218261719 2 485.805834 969.597115 0.24833 0.00012064 0.41319 0.00020073 0.66152 0.00032137 485.80602002389736 29.098 0.22007 29.129 29.03 29.25 0.030106 15 8 2 0 0 0 0.18144 1 15161 15161 24.991 3.454 1 2115100 65664 6820 43680 44670 76674 76674 0.11110039576851705 TPSRKGLVL 9 Unmodified _TPSRKGLVL_ 0 0 0 ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3 ENST00000580997.1_1_17:7468099-7469096:+|nuORF ENST00000580997.1_1_17:7468099-7469096:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.3004455566406 2 485.805834 969.597115 0.70376 0.00034189 -0.3123 -0.00015172 0.39146 0.00019017 485.80561306641795 31.841 0.32199 28.145 28 28.322 -3.6958 30 17 2 0 0 0 0.14565 1 18036 18036 19.362 4.5237 1 22941000 65665 6820 43680 44670 76675 76675 0.11110039576851705 TPSRYKTEL 9 Unmodified _TPSRYKTEL_ 0 0 0 ENSG00000128016|ENST00000597629|ZFP36 ENSG00000128016|ENST00000597629|ZFP36 ENSG00000128016|ENST00000597629|ZFP36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5361938476562 3 365.532868 1093.57677 0.92289 0.00033735 0.78098 0.00028547 1.7039 0.00062282 365.5331430352127 22.778 0.37333 20 19.844 20.217 -2.7784 59 27 3 0 0 0 0.28023 1 12233 12233 17.443 5.2151 1 18219000 65666 4043 43681 44671 76676 76676 0.03372824126358864 TPSRYKTEL 9 Unmodified _TPSRYKTEL_ 0 0 0 ENSG00000128016|ENST00000597629|ZFP36 ENSG00000128016|ENST00000597629|ZFP36 ENSG00000128016|ENST00000597629|ZFP36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.795654296875 2 547.795663 1093.57677 0.19356 0.00010603 -0.51706 -0.00028324 -0.3235 -0.00017721 547.7953236932893 22.813 0.1725 20.035 19.945 20.117 -2.7784 20 13 2 0 0 0 0.013609 1 12279 12279 70.332 18.702 1 3455700 65667 4043 43681 44671 76677 76677 0.03372824126358864 TPSSARSLSL 10 Unmodified _TPSSARSLSL_ 0 0 0 REV__ENST00000357640.8_1_1:111737335-111738671:-|nuORF REV__ENST00000357640.8_1_1:111737335-111738671:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7809753417969 2 509.780013 1017.54547 NaN NaN NaN NaN NaN NaN NaN 61.456 1 61.456 60.956 61.956 0 0 0 0 0.71157 1 34264 34264 16.149 0.30192 1 + 65668 25856 43682 44672 76678 76678 0.03740251092278868 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 964.502685546875 1 964.498589 963.491313 -0.24095 -0.00023239 1.7626 0.0017 1.5217 0.0014676 964.5002333465809 71.175 0.40898 71.175 70.954 71.363 0 65 19 4 0 0 0 0.0090851 2 39572 39572;39678 85.357 40.95 1 33158000 65669 2015;6869 43683 44673 76679;76680 76679 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.754150390625 2 482.752933 963.491313 -0.13467 -6.5014E-05 0.47672 0.00023014 0.34205 0.00016512 482.7530832746545 71.175 0.48728 71.175 70.954 71.442 0 76 23 5 0 0 0 0.052168 2 39588 39588;39687 44.407 14.182 1 28014000 65670 2015;6869 43683 44673 76681;76682 76681 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 964.4996948242188 1 964.498589 963.491313 0.43056 0.00041527 0.8061 0.00077749 1.2367 0.0011928 964.4992932827083 71.637 0.41237 71.161 70.976 71.389 -0.47609 40 16 3 0 0 0 0.0090851 2 39244 39139;39244 85.357 34.502 1 5432500 65671 2015;6869 43683 44673 76683;76684 76684 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7530212402344 2 482.752933 963.491313 0.6371 0.00030756 0.4096 0.00019774 1.0467 0.0005053 482.7530694605617 71.659 0.41302 71.183 70.95 71.363 -0.47609 50 16 4 0 0 0 0.038285 2 39260 39162;39260 50.855 12.704 1 5379000 65672 2015;6869 43683 44673 76685;76686 76686 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 964.5018920898438 1 964.498589 963.491313 1.43 0.0013792 2.9688 0.0028634 4.3988 0.0042426 964.5013554044707 71.157 0.23339 71.196 71.089 71.323 0.039024 14 9 2 0 0 0 0.070838 1 39148 39148 39.957 18.211 1 835100 65673 2015;6869 43683 44673 76687 76687 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.4993286132812 1 964.498589 963.491313 0.60602 0.00058451 -0.31211 -0.00030103 0.29391 0.00028348 964.4982285391932 77.915 0.77481 71.739 71.445 72.22 -6.1757 89 44 3 0 0 0 0.0083087 4 51097 50855;50973;51097;51217 97.075 46.22 1 60329000 65674 2015;6869 43683 44673 76688;76689;76690;76691 76690 0.008106589407248066 TPSSDVLVF 9 Unmodified _TPSSDVLVF_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7;ENST00000486166.1_1_X:16871803-16876886:-|nuORF;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4;ENST00000401893.7_1_1:33116898-33134028:+|nuORF;nc|ENSG00000162521|Q09028-4|RBBP4;ENST00000398588.2_1_6:58446590-58447106:-|nuORF ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000162521|Q09028-3|RBBP4 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7534484863281 2 482.752933 963.491313 0.81893 0.00039534 0.40144 0.0001938 1.2204 0.00058914 482.7530169943236 77.994 0.82653 71.818 71.428 72.255 -6.1757 121 47 4 0 0 0 0.023164 4 51100 50975;51100;51230;51314 60.39 30.165 1 88020000 65675 2015;6869 43683 44673 76692;76693;76694;76695 76693 0.008106589407248066 TPSSLYMEY 9 Oxidation (M) _TPSSLYM(Oxidation (M))EY_ TPSSLYM(1)EY TPSSLYM(57)EY 0 0 1 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7412109375 2 553.739165 1105.46378 NaN NaN NaN NaN NaN NaN NaN 44.262 1 44.262 43.762 44.762 0 0 0 0 0.050352 1 24080 24080 57.471 41.624 1 65676 5663 43684 44674 76696 76696 1033 -0.08473612381817475 TPSSPTPEL 9 Unmodified _TPSSPTPEL_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MSMS AL20221201_MKP_PDAC_01 4 464.7350463867188 2 464.73474 927.454927 NaN NaN NaN NaN NaN NaN NaN 48.492 1 43.096 42.596 43.596 -5.3961 0 0 0 0.17247 1 30213 30213 34.102 0 1 + 65677 29495 43685 44675 76697 76697 -0.011702179559961223 TPSSSRLEL 9 Unmodified _TPSSSRLEL_ 0 0 0 nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1;nc|ENSG00000110497|Q9C0C7-6|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 nc|ENSG00000110497|Q9C0C7-4|AMBRA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2674865722656 2 495.266739 988.518924 0.89957 0.00044553 0.17654 8.7432E-05 1.0761 0.00053296 495.2667011472152 40.662 0.38886 36.132 35.934 36.323 -4.5294 60 23 3 0 0 0 0.0099157 2 24356 24224;24356 80.676 7.7081 1 21556000 65678 2723 43686 44676 76698;76699 76699 0.024205622009503713 TPSSSTPSF 9 Unmodified _TPSSSTPSF_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.4177856445312 1 910.415253 909.407977 0.97969 0.00089193 0.39155 0.00035647 1.3712 0.0012484 910.4157951700818 40.895 0.17358 36.287 36.18 36.353 -4.6079 13 10 2 0 0 0 0.0041763 1 24479 24479 120.45 35.094 1 3985800 65679 7924 43687 44677 76700 76700 -0.05035077507125152 TPSTPFSDL 9 Unmodified _TPSTPFSDL_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.734130859375 2 482.73474 963.454927 -0.09318 -4.4981E-05 -0.8559 -0.00041317 -0.94908 -0.00045816 482.7342413426472 71.403 0.41222 71.403 71.187 71.599 0 52 20 3 0 0 0 0.2001 1 39847 39847 23.148 6.2061 1 8367100 65680 9279 43688 44678 76701 76701 -0.028262179559988 TPSTPGEFES 10 Unmodified _TPSTPGEFES_ 0 0 0 nc|ENSG00000130540|Q9BR01-2|SULT4A1;ENSG00000130540|ENST00000330884|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 nc|ENSG00000130540|Q9BR01-2|SULT4A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2324829101562 2 526.232561 1050.45057 NaN NaN NaN NaN NaN NaN NaN 36.71 1 36.461 35.961 36.961 -0.2497 0 0 0 0.11618 1 19270 19270 49.933 17.628 1 65681 4222 43689 44679 76702 76702 -0.07263727169561207 TPSTPQSQHF 10 Unmodified _TPSTPQSQHF_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.26611328125 2 565.26727 1128.51999 -0.59153 -0.00033437 -1.0983 -0.00062082 -1.6898 -0.00095519 565.2666218695573 30.439 0.23902 30.439 30.285 30.524 0 22 11 2 0 0 0 0.62068 1 15830 15830 10.074 0 1 1959500 65682 2577 43690 44680 76703 76703 -0.03913223430140533 TPSTVHLFDFS 11 Unmodified _TPSTVHLFDFS_ 0 0 0 ENST00000510329.1_1_5:1802276-1802330:+|nuORF ENST00000510329.1_1_5:1802276-1802330:+|nuORF ENST00000510329.1_1_5:1802276-1802330:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.8064575195312 2 625.806228 1249.5979 -0.018169 -1.137E-05 -0.16933 -0.00010597 -0.1875 -0.00011734 625.8060269482077 54.775 0.21833 54.308 54.222 54.44 -0.46664 17 10 2 0 0 0 0.59689 1 29718 29718 11.495 0 1 2683800 65683 14584 43691 44681 76704 76704 -0.016912105647634235 TPSVAMHNLLE 11 Unmodified _TPSVAMHNLLE_ 0 0 0 REV__ENST00000568593.1_1_3:47421682-47421838:-|nuORF REV__ENST00000568593.1_1_3:47421682-47421838:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5413208007812 3 404.541146 1210.60161 0.33372 0.000135 -0.19829 -8.0218E-05 0.13543 5.4786E-05 404.54116924171177 22.879 0.33205 20.101 19.973 20.305 -2.7784 48 21 3 0 0 0 0.61059 1 12369 12369 5.8681 0 1 7287600 + 65684 28946 43692 44682 76705 76705 0.004731359374318345 TPTGAISQY 9 Unmodified _TPTGAISQY_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2347106933594 2 469.234907 936.455261 -0.26726 -0.00012541 0.19509 9.1542E-05 -0.072173 -3.3866E-05 469.2347772768068 34.546 0.27074 34.546 34.365 34.636 0 35 13 4 0 0 0 0.026094 1 18171 18171 57.471 23.369 1 4851700 65685 10130 43693 44683 76706 76706 -0.015507982361327777 TPTGAISQY 9 Unmodified _TPTGAISQY_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.235107421875 2 469.234907 936.455261 0.31502 0.00014782 -0.36591 -0.0001717 -0.050888 -2.3879E-05 469.23465323512977 40.222 0.35183 35.692 35.582 35.934 -4.5294 34 26 2 0 0 0 0.047196 1 23997 23997 46.021 24.274 1 13850000 65686 10130 43693 44683 76707 76707 -0.015507982361327777 TPTGIKVVM 9 Oxidation (M) _TPTGIKVVM(Oxidation (M))_ TPTGIKVVM(1) TPTGIKVVM(89) 0 0 1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2729797363281 2 481.272978 960.531403 -0.62626 -0.0003014 0.7011 0.00033742 0.074848 3.6022E-05 481.2733821128221 32.104 0.43764 32.104 31.86 32.297 0 64 21 4 0 0 0 0.0086209 2 16767 16661;16767 89.401 51.427 1 18864000 65687 7943 43694 44684 76708;76709 76709 1355 0.049558823396409935 TPTGIKVVM 9 Oxidation (M) _TPTGIKVVM(Oxidation (M))_ TPTGIKVVM(1) TPTGIKVVM(130) 0 0 1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2735595703125 2 481.272978 960.531403 0.092061 4.4306E-05 0.27236 0.00013108 0.36442 0.00017539 481.27329749033265 32.093 0.45351 31.964 31.722 32.176 -0.12915 70 17 6 0 0 0 0.0017364 2 16613 16613;16708 134.3 82.027 1 21950000 65688 7943 43694 44684 76710;76711 76710 1355 0.049558823396409935 TPTGIKVVM 9 Oxidation (M) _TPTGIKVVM(Oxidation (M))_ TPTGIKVVM(1) TPTGIKVVM(93) 0 0 1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2732543945312 2 481.272978 960.531403 0.71504 0.00034413 -0.19056 -9.1711E-05 0.52449 0.00025242 481.2729461268397 36.609 0.63988 32.325 32.01 32.65 -4.2835 121 39 4 0 0 0 0.0082475 3 21501 21257;21380;21501 99.755 61.781 1 121870000 65689 7943 43694 44684 76712;76713;76714 76714 1355 0.049558823396409935 TPTGIKVVM 9 Unmodified _TPTGIKVVM_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2760925292969 2 473.275521 944.536489 0.56656 0.00026814 -0.40213 -0.00019032 0.16443 7.782E-05 473.2754736204948 46.322 0.23283 45.986 45.84 46.073 -0.33664 29 11 3 0 0 0 0.0094097 1 24756 24756 82.529 44.555 1 8020200 65690 7943 43694 44685 76715 76715 0.06200186202261193 TPTGIKVVM 9 Unmodified _TPTGIKVVM_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.27587890625 2 473.275521 944.536489 0.39193 0.00018549 1.2954 0.00061307 1.6873 0.00079856 473.27611116368314 46.014 0.20062 45.986 45.864 46.064 -0.028011 13 8 2 0 0 0 0.34999 1 24752 24752 14.838 0 1 1335700 65691 7943 43694 44685 76716 76716 0.06200186202261193 TPTGIKVVM 9 Unmodified _TPTGIKVVM_ 0 0 0 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 ENSG00000170043|ENST00000303731|TRAPPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2757568359375 2 473.275521 944.536489 0.68683 0.00032506 -0.27193 -0.0001287 0.4149 0.00019636 473.2755806046261 51.54 0.43343 45.891 45.656 46.09 -5.649 78 26 4 0 0 0 0.0038489 3 32440 32319;32440;32579 122.18 60.822 1 359250000 65692 7943 43694 44685 76717;76718;76719 76718 0.06200186202261193 TPTHHQEFL 9 Unmodified _TPTHHQEFL_ 0 0 0 REV__ENST00000261038.5_1_3:122564669-122591304:+|nuORF REV__ENST00000261038.5_1_3:122564669-122591304:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2730712890625 2 555.272355 1108.53016 0.5864 0.00032561 0.46048 0.00025569 1.0469 0.0005813 555.2724179523702 96.439 0.36972 96.135 95.915 96.284 -0.30472 35 22 2 0 0 0 0.53666 1 52622 52622 5.2307 0 1 532150 + 65693 24972 43695 44686 76720 76720 -0.019766157048934474 TPTIPHCSM 9 Carbamidomethyl (C),Oxidation (M) _TPTIPHC(Carbamidomethyl (C))SM(Oxidation (M))_ TPTIPHC(1)SM TPTIPHCSM(1) TPTIPHC(96)SM TPTIPHCSM(96) 0 1 1 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2348022460938 2 530.233527 1058.4525 0.54175 0.00028725 -0.3784 -0.00020064 0.16335 8.6612E-05 530.2336398882301 28.235 0.36718 25.087 24.878 25.246 -3.1482 37 19 3 0 0 0 0.0082485 2 15779 15652;15779 103.75 73.112 1 14119000 65694 7513 43696 44687 76721;76722 76722 726 1290 -0.07438712956945892 TPTIPHCSM 9 Carbamidomethyl (C) _TPTIPHC(Carbamidomethyl (C))SM_ TPTIPHC(1)SM TPTIPHC(85)SM 0 1 0 ENST00000569299.1_1_16:66967504-66968009:-|nuORF;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENSG00000166595|ENST00000422424|CIAO2B ENST00000569299.1_1_16:66967504-66968009:-|nuORF ENST00000569299.1_1_16:66967504-66968009:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.236572265625 2 522.23607 1042.45759 0.96325 0.00050304 -0.76484 -0.00039943 0.19841 0.00010361 522.2358378365283 39.129 0.40348 34.678 34.472 34.876 -4.4509 64 25 3 0 0 0 0.0090948 2 23259 23125;23259 85.272 54.635 1 27399000 65695 7513 43696 44688 76723;76724 76724 726 -0.06194409094337061 TPTIRRSIL 9 Unmodified _TPTIRRSIL_ 0 0 0 nc|ENSG00000185697|P10243-2|MYBL1;ENSG00000185697|ENST00000522677|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.171630859375 3 352.888986 1055.64513 0.032252 1.1381E-05 -0.091253 -3.2202E-05 -0.059001 -2.0821E-05 352.8890619555934 34.238 0.16357 34.265 34.163 34.327 0.027405 11 7 2 0 0 0 0.21856 1 18017 18017 1.9064 1.9064 1 1184700 65696 9401 43697 44689 76725 76725 0.11953113496883816 TPTKRRAI 8 Unmodified _TPTKRRAI_ 0 0 0 nc|ENSG00000089250|P29475-3|NOS1;nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1 nc|ENSG00000089250|P29475-3|NOS1 nc|ENSG00000089250|P29475-3|NOS1 MSMS AL20221201_MKP_PDAC_01 4 471.796630859375 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 12.169 1 9.6873 9.1873 10.187 -2.482 0 0 0 0.97444 1 6145 6145 0.69038 0 1 65697 1526 43698 44690 76726 76726 0.10392288636899139 TPTKSFAVY 9 Unmodified _TPTKSFAVY_ 0 0 0 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 ENSG00000175895|ENST00000315367|PLEKHF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2699279785156 2 507.26875 1012.52295 -0.32804 -0.00016641 2.1751 0.0011033 1.847 0.00093694 507.2699870025773 38.494 0.21223 38.207 38.071 38.283 -0.28687 25 9 3 0 0 0 0.037253 1 20246 20246 51.415 19.298 1 4443400 65698 8548 43699 44691 76727 76727 0.017186516946594566 TPTLPSITY 9 Unmodified _TPTLPSITY_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7690734863281 2 496.768583 991.522613 0.085273 4.2361E-05 -0.018898 -9.3877E-06 0.066375 3.2973E-05 496.7687552661752 66.066 0.25542 65.583 65.456 65.711 -0.48323 34 12 4 0 0 0 0.0090851 1 36042 36042 85.357 43.262 1 8022200 65699 907 43700 44692 76728 76728 0.026512319748121627 TPTLQAFGT 9 Unmodified _TPTLQAFGT_ 0 0 0 REV__ENST00000473637.6_1_17:80553997-80559372:+|nuORF REV__ENST00000473637.6_1_17:80553997-80559372:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.4843139648438 1 935.483273 934.475997 0.43049 0.00040272 -0.60002 -0.00056131 -0.16953 -0.00015859 935.4823860718259 49.185 0.23441 49.185 49.042 49.277 0 17 10 2 0 0 0 0.095405 1 27006 27006 34.102 1.797 1 2305300 + 65700 27546 43701 44693 76729 76729 0.006137921435083626 TPTLQYEIY 9 Unmodified _TPTLQYEIY_ 0 0 0 REV__ENSG00000130340|ENST00000392185|SNX9 REV__ENSG00000130340|ENST00000392185|SNX9 MSMS AL20221201_MKP_PDAC_01 4 564.28515625 2 564.284597 1126.55464 NaN NaN NaN NaN NaN NaN NaN 77.437 1 71.261 70.761 71.761 -6.1757 0 0 0 0.56093 1 50653 50653 13.906 3.0821 1 + 65701 19716 43702 44694 76730 76730 -0.003574003420453664 TPTPNYYF 8 Unmodified _TPTPNYYF_ 0 0 0 ENST00000443023.5_1_2:200322266-200322902:-|nuORF ENST00000443023.5_1_2:200322266-200322902:-|nuORF ENST00000443023.5_1_2:200322266-200322902:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7669372558594 2 501.732 1001.44945 NaN NaN NaN NaN NaN NaN NaN 61.442 1 61.442 60.942 61.942 0 0 0 0 0.95607 1 34256 34256 9.3474 2.6243 1 65702 13416 43703 44695 76731 76731 -0.05121896747812116 TPTPPGQYF 9 Unmodified _TPTPPGQYF_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2473754882812 2 504.245275 1006.476 NaN NaN NaN NaN NaN NaN NaN 32.119 1 32.119 31.619 32.619 0 0 0 0 0.7818 1 16756 16756 6.7232 0.51738 1 65703 8081 43704 44696 76732 76732 -0.02698207856474255 TPTQPPKKVV 10 Unmodified _TPTQPPKKVV_ 0 0 0 ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A ENSG00000176809|ENST00000584306|LRRC37A3 ENSG00000176809|ENST00000584306|LRRC37A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5412902832031 3 365.557125 1093.64954 -0.14631 -5.3483E-05 1.093 0.00039954 0.94665 0.00034606 365.55736310758743 32.716 0.32552 32.746 32.539 32.864 0.029743 31 13 3 0 0 0 0.2399 1 17236 17236 1.9064 0 1 13725000 65704 8613 43705 44697 76733 76733 0.10646577919806077 TPTRPTLLI 9 Unmodified _TPTRPTLLI_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7876892089844 2 506.313492 1010.61243 0.33704 0.00017065 -0.077949 -3.9467E-05 0.25909 0.00013118 506.3134947220664 62.206 0.36567 61.718 61.55 61.915 -0.48764 53 16 4 0 0 0 0.16895 1 33888 33888 24.021 2.2739 1 20901000 65705 8065 43706 44698 76734 76734 0.10754906374052098 TPTRPTLLI 9 Unmodified _TPTRPTLLI_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.313492 1010.61243 0.33925 0.00017177 -1.2439 -0.00062982 -0.90468 -0.00045805 506.3126794329946 61.846 0.20083 61.846 61.728 61.929 0 0.064156 -0.00083608 NaN 24.021 16 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2053000 65706 8065 43706 44698 0.10754906374052098 TPTSRLTPL 9 Unmodified _TPTSRLTPL_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2882690429688 2 493.287474 984.560395 -0.14417 -7.1118E-05 1.0264 0.00050633 0.88227 0.00043521 493.2879263427044 35.03 0.35511 34.808 34.646 35.001 -0.2224 38 15 3 0 0 0 0.018301 1 18305 18305 65.235 5.1611 1 4932500 + 65707 22852 43707 44699 76735 76735 0.06749742960278127 TPTSRLTPL 9 Unmodified _TPTSRLTPL_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.287474 984.560395 -0.45631 -0.00022509 0.56889 0.00028062 0.11258 5.5532E-05 493.2877220275276 34.974 0.26424 34.974 34.846 35.11 0 0.0047481 -5.4828E-05 NaN 65.235 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2290600 + 65708 22852 43707 44699 0.06749742960278127 TPTSRLTPL 9 Unmodified _TPTSRLTPL_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 493.287474 984.560395 0.72837 0.00035929 0.23931 0.00011805 0.96768 0.00047734 493.28740487520673 39.576 0.40709 35.125 34.946 35.353 -4.4509 0.15616 -0.00037998 NaN 65.235 61 25 3 NaN NaN NaN NaN 0 NaN NaN 0 29779000 + 65709 22852 43707 44699 0.06749742960278127 TPTSTTSTY 9 Unmodified _TPTSTTSTY_ 0 0 0 REV__nc|ENSG00000158636|Q7Z589-6|EMSY REV__nc|ENSG00000158636|Q7Z589-6|EMSY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7238159179688 2 479.72183 957.429106 0.52618 0.00025242 0.31747 0.0001523 0.84365 0.00040472 479.72257316542346 42.336 0.70627 42.336 42.03 42.737 0 94 35 5 0 0 0 0.48152 1 22811 22811 8.5933 0.68312 1 10458000 + 65710 21438 43708 44700 76736 76736 -0.05131112198273513 TPTSVIPKL 9 Unmodified _TPTSVIPKL_ 0 0 0 ENST00000493669.2_1_1:28733953-28817463:+|nuORF;nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4 ENST00000493669.2_1_1:28733953-28817463:+|nuORF ENST00000493669.2_1_1:28733953-28817463:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2945251464844 2 478.294768 954.574983 NaN NaN NaN NaN NaN NaN NaN 54.56 1 54.093 53.593 54.593 -0.46664 0 0 0 0.22437 1 29569 29569 29.082 13.234 1 65711 10245 43709 44701 76737 76737 0.09587815108409359 TPTSVNYHF 9 Unmodified _TPTSVNYHF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2515258789062 2 533.253631 1064.49271 -0.30153 -0.00016079 -0.25754 -0.00013733 -0.55907 -0.00029813 533.2532946034875 41.127 0.27635 41.127 41.005 41.281 0 29 13 3 0 0 0 0.0082475 1 22140 22140 92.653 56.526 1 5989900 65712 4592 43710 44702 76738 76738 -0.036957069705295 TPTVIAVHY 9 Unmodified _TPTVIAVHY_ 0 0 0 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7773132324219 2 500.776742 999.538931 0.8416 0.00042145 0.61049 0.00030572 1.4521 0.00072717 500.77673760692704 47.571 0.25717 47.571 47.45 47.707 0 35 11 4 0 0 0 0.0083087 1 26053 26053 97.075 46.22 1 8268900 + 65713 3873;196 43711 44703 76739 76739 0.03914357931557788 TPTVIAVHY 9 Unmodified _TPTVIAVHY_ 0 0 0 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7767639160156 2 500.776742 999.538931 0.33163 0.00016607 0.14994 7.5087E-05 0.48157 0.00024116 500.77680870243796 47.853 0.24789 47.5 47.347 47.595 -0.3526 28 11 3 0 0 0 0.0036753 1 25620 25620 123.1 72.241 1 16967000 + 65714 3873;196 43711 44703 76740 76740 0.03914357931557788 TPTVIAVHY 9 Unmodified _TPTVIAVHY_ 0 0 0 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7774658203125 2 500.776742 999.538931 0.85917 0.00043025 -0.37813 -0.00018936 0.48104 0.00024089 500.7766167918551 53.392 0.36213 47.588 47.383 47.745 -5.8042 50 22 3 0 0 0 0.0012811 2 33771 33639;33771 137.59 77.196 1 68250000 + 65715 3873;196 43711 44703 76741;76742 76742 0.03914357931557788 TPTVTTPSL 9 Unmodified _TPTVTTPSL_ 0 0 0 nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S nc|ENSG00000130479|Q66K74-2|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7532653808594 2 458.752933 915.491313 0.85995 0.0003945 -0.72871 -0.0003343 0.13124 6.0207E-05 458.7527324220814 49.35 0.24669 49.35 49.194 49.441 0 21 11 3 0 0 0 0.0090851 1 27163 27163 85.357 18.013 1 3540500 65716 4215 43712 44704 76743 76743 0.030186589407207975 TPVAGSQSL 9 Unmodified _TPVAGSQSL_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENST00000574593.1_1_16:2817540-2819884:+|nuORF ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.2282104492188 2 430.229625 858.444697 -0.41642 -0.00017916 -1.7623 -0.00075817 -2.1787 -0.00093733 430.22865802566 30.766 0.30581 30.766 30.566 30.872 0 23 14 2 0 0 0 0.011968 1 15985 15985 74.929 17.458 1 2703800 65717 7692 43713 44705 76744 76744 0.009812191094397349 TPVAVITDM 9 Oxidation (M) _TPVAVITDM(Oxidation (M))_ TPVAVITDM(1) TPVAVITDM(110) 0 0 1 ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7466125488281 2 481.746793 961.479033 0.077668 3.7416E-05 -0.029995 -1.445E-05 0.047672 2.2966E-05 481.746683033075 43.569 0.38491 43.569 43.399 43.784 0 51 18 4 0 0 0 0.0067112 2 23755 23630;23755 112.59 49.03 1 84640000 65718 12068 43714 44706 76745;76746 76746 1750 -0.003247007939762625 TPVAVITDM 9 Oxidation (M) _TPVAVITDM(Oxidation (M))_ TPVAVITDM(1) TPVAVITDM(130) 0 0 1 ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.7473754882812 2 481.746793 961.479033 1.0207 0.00049173 -0.10547 -5.0809E-05 0.91525 0.00044092 481.74674139738704 51.28 0.47939 45.631 45.354 45.833 -5.649 48 29 2 0 0 0 0.0031966 2 32219 32219;32340 125.62 62.062 1 54823000 65719 12068 43714 44706 76747;76748 76747 1750 -0.003247007939762625 TPVAVITDM 9 Unmodified _TPVAVITDM_ 0 0 0 ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2510375976562 2 473.749336 945.484119 0.81319 0.00038525 -0.53637 -0.00025411 0.27682 0.00013114 473.74902200431274 70.076 0.43283 63.9 63.685 64.118 -6.1757 42 24 2 0 0 0 0.0067112 2 45817 45692;45817 112.59 41.878 1 58316000 65720 12068 43714 44707 76749;76750 76750 0.009196030686325685 TPVAVITDM 9 Unmodified _TPVAVITDM_ 0 0 0 ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF ENST00000354911.8_2_10:28822518-28879725:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.491943359375 1 946.491395 945.484119 0.31051 0.0002939 0.45638 0.00043196 0.76689 0.00072585 946.4920177328546 70.097 0.37576 63.921 63.727 64.103 -6.1757 33 21 2 0 0 0 2.6408E-15 2 45851 45720;45851 188.58 83.778 1 36065000 65721 12068 43714 44707 76751;76752 76752 0.009196030686325685 TPVDDPMSL 9 Oxidation (M) _TPVDDPM(Oxidation (M))SL_ TPVDDPM(1)SL TPVDDPM(82)SL 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7261352539062 2 495.726058 989.437562 0.27457 0.00013611 -0.58672 -0.00029085 -0.31215 -0.00015474 495.725782064063 38.151 0.23653 38.151 37.947 38.184 0 25 11 3 0 0 0 0.0095811 1 20343 20343 81.613 24.142 1 7282300 65722 3156 43715 44708 76753 76753 559 -0.05757881553290645 TPVDDPMSL 9 Oxidation (M) _TPVDDPM(Oxidation (M))SL_ TPVDDPM(1)SL TPVDDPM(100)SL 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7258911132812 2 495.726058 989.437562 0.39193 0.00019429 0.014654 7.2646E-06 0.40658 0.00020155 495.72584347195004 38.309 0.25569 38.309 38.22 38.476 0 30 23 2 0 0 0 0.0088975 1 20465 20465 104.8 37.455 1 7717000 65723 3156 43715 44708 76754 76754 559 -0.05757881553290645 TPVDDPMSLLY 11 Oxidation (M) _TPVDDPM(Oxidation (M))SLLY_ TPVDDPM(1)SLLY TPVDDPM(69)SLLY 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.7998657226562 2 633.799754 1265.58495 0.16496 0.00010455 -0.33577 -0.00021281 -0.17081 -0.00010826 633.7997002155537 66.025 0.44048 66.025 65.776 66.216 0 86 22 5 0 0 0 0.0088414 2 36834 36733;36834 69.105 55.199 1 54843000 65724 3156 43716 44709 76755;76756 76756 559 -0.03721409739137016 TPVDDPMSLLY 11 Oxidation (M) _TPVDDPM(Oxidation (M))SLLY_ TPVDDPM(1)SLLY TPVDDPM(79)SLLY 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.7998657226562 2 633.799754 1265.58495 0.32167 0.00020387 -0.84115 -0.00053312 -0.51948 -0.00032925 633.7995584327535 66.734 0.54652 66.734 66.446 66.992 0 84 25 5 0 0 0 0.0029835 2 37222 37120;37222 78.728 56.981 1 50575000 65725 3156 43716 44709 76757;76758 76758 559 -0.03721409739137016 TPVDDPMSLLY 11 Oxidation (M) _TPVDDPM(Oxidation (M))SLLY_ TPVDDPM(1)SLLY TPVDDPM(79)SLLY 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.7998657226562 2 633.799754 1265.58495 -0.12651 -8.0184E-05 0.72617 0.00046024 0.59965 0.00038006 633.8002596134514 66.62 0.41219 66.137 65.902 66.314 -0.48323 62 19 4 0 0 0 0.0029835 1 36411 36411 78.728 64.822 1 11315000 65726 3156 43716 44709 76759 76759 559 -0.03721409739137016 TPVDDPMSLLY 11 Oxidation (M) _TPVDDPM(Oxidation (M))SLLY_ TPVDDPM(1)SLLY TPVDDPM(69)SLLY 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.8008422851562 2 633.799754 1265.58495 0.099917 6.3328E-05 0.53584 0.00033961 0.63575 0.00040294 633.800368151496 67.295 0.48482 66.813 66.634 67.119 -0.48219 55 21 4 0 0 0 0.0088414 1 36800 36800 69.105 54.267 1 11171000 65727 3156 43716 44709 76760 76760 559 -0.03721409739137016 TPVDDPMSLLY 11 Oxidation (M) _TPVDDPM(Oxidation (M))SLLY_ TPVDDPM(1)SLLY TPVDDPM(60)SLLY 0 0 1 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8012084960938 2 633.799754 1265.58495 0.97863 0.00062025 -0.88554 -0.00056126 0.093086 5.8998E-05 633.79951762641 66.137 0.34957 66.146 65.993 66.342 0.0095596 32 17 3 0 0 0 0.017265 1 36266 36266 60.074 38.327 1 6616900 65728 3156 43716 44709 76761 76761 559 -0.03721409739137016 TPVDDPMSLLY 11 Unmodified _TPVDDPMSLLY_ 0 0 0 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.8023681640625 2 625.802297 1249.59004 0.24197 0.00015143 -0.013747 -8.6026E-06 0.22823 0.00014282 625.8023353238783 87.819 0.43607 87.819 87.595 88.031 0 70 21 4 0 0 0 0.014934 2 48648 48545;48648 62.573 51.749 1 7153900 65729 3156 43716 44710 76762;76763 76763 -0.02477105876528185 TPVDDPMSLLY 11 Unmodified _TPVDDPMSLLY_ 0 0 0 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.8024291992188 2 625.802297 1249.59004 0.33437 0.00020925 -0.049614 -3.1048E-05 0.28476 0.0001782 625.8023336692102 88.372 0.44257 87.868 87.649 88.091 -0.50423 74 19 5 0 0 0 0.10551 2 48354 48252;48354 41.84 32.457 1 12355000 65730 3156 43716 44710 76764;76765 76765 -0.02477105876528185 TPVDDPMSLLY 11 Unmodified _TPVDDPMSLLY_ 0 0 0 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.8027954101562 2 625.802297 1249.59004 1.1747 0.00073512 -0.16253 -0.00010171 1.0122 0.00063341 625.8023246796838 97.314 1.312 91.138 90.453 91.765 -6.1757 234 78 5 0 0 0 0.0069872 5 64372 64257;64372;64486;64602;64719 71.922 61.098 1 291770000 65731 3156 43716 44710 76766;76767;76768;76769;76770 76767 -0.02477105876528185 TPVDDPMSLLY 11 Unmodified _TPVDDPMSLLY_ 0 0 0 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 ENSG00000115738|ENST00000396290|ID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.8021240234375 2 625.802297 1249.59004 0.99577 0.00062316 0.55517 0.00034743 1.5509 0.00097059 625.8026281734758 98.433 0.23145 92.257 92.134 92.365 -6.1757 27 15 3 0 0 0 0.073964 1 65275 65275 45.7 21.679 1 17072000 65732 3156 43716 44710 76771 76771 -0.02477105876528185 TPVDDRISL 9 Unmodified _TPVDDRISL_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2744445800781 2 508.274564 1014.53457 0.27069 0.00013759 0.23119 0.00011751 0.50188 0.00025509 508.27469779358717 45.52 0.24851 45.52 45.396 45.644 0 30 13 3 0 0 0 0.082934 1 24881 24881 37.075 14.338 1 19045000 65733 883 43717 44711 76772 76772 0.027888487180121047 TPVDLASSM 9 Oxidation (M) _TPVDLASSM(Oxidation (M))_ TPVDLASSM(1) TPVDLASSM(100) 0 0 1 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7211608886719 2 468.720775 935.426998 -0.70719 -0.00033148 0.56858 0.0002665 -0.13861 -6.497E-05 468.72107733637046 32.255 0.25023 32.255 32.105 32.355 0 32 12 3 0 0 0 0.0088975 1 16805 16805 104.8 56.453 1 6865700 65734 1080 43718 44712 76773 76773 180 -0.04329864207727496 TPVDLASSM 9 Unmodified _TPVDLASSM_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.440673828125 1 920.43936 919.432083 1.0805 0.00099452 -0.71017 -0.00065366 0.37032 0.00034086 920.4390365581254 58.359 0.31269 52.284 52.126 52.439 -6.0745 20 16 2 0 0 0 0.0018186 1 37394 37394 133.7 66.358 1 8754300 65735 1080 43718 44713 76774 76774 -0.030855603451186653 TPVDLASSM 9 Unmodified _TPVDLASSM_ 0 0 0 ENSG00000072364|ENST00000265343|AFF4;nc|ENSG00000072364|Q9UHB7-2|AFF4 ENSG00000072364|ENST00000265343|AFF4 ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7235412597656 2 460.723318 919.432083 1.2618 0.00058132 -0.77538 -0.00035724 0.48638 0.00022409 460.7229465979374 58.403 0.3829 52.328 52.109 52.492 -6.0745 30 20 2 0 0 0 0.019303 1 37401 37401 64.236 19.829 1 14268000 65736 1080 43718 44713 76775 76775 -0.030855603451186653 TPVDLNKHLY 10 Unmodified _TPVDLNKHLY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5517883300781 3 400.552151 1198.63462 0.15384 6.162E-05 0.19039 7.6263E-05 0.34423 0.00013788 400.5522038334555 37.133 0.26439 37.133 36.936 37.201 0 31 12 4 0 0 0 0.40136 1 19688 19688 35.612 28.989 1 3225300 65737 445 43719 44714 76776 76776 0.04325086051812832 TPVDLNKHLY 10 Unmodified _TPVDLNKHLY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5517578125 3 400.552151 1198.63462 -0.10777 -4.3168E-05 0.89401 0.0003581 0.78624 0.00031493 400.55256681698404 37.458 0.23941 37.187 37.039 37.279 -0.27133 23 9 3 0 0 0 0.23548 1 19669 19669 27.088 21.305 1 5302800 65738 445 43719 44714 76777 76777 0.04325086051812832 TPVDLNKHLY 10 Unmodified _TPVDLNKHLY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.324462890625 2 600.324588 1198.63462 -0.1084 -6.5073E-05 0.42366 0.00025433 0.31527 0.00018926 600.324917152386 37.459 0.16166 37.188 37.092 37.254 -0.27133 14 6 3 0 0 0 0.077785 1 19681 19681 51.63 34.517 1 1373600 65739 445 43719 44714 76778 76778 0.04325086051812832 TPVDLNKHLY 10 Unmodified _TPVDLNKHLY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5509948730469 3 400.552151 1198.63462 0.80721 0.00032333 0.5384 0.00021566 1.3456 0.00053899 400.55258195364934 42.1 0.32442 37.415 37.234 37.559 -4.6846 48 20 3 0 0 0 0.1899 2 25480 25333;25480 31.636 21.872 1 39994000 65740 445 43719 44714 76779;76780 76780 0.04325086051812832 TPVDLNKHLY 10 Unmodified _TPVDLNKHLY_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3246459960938 2 600.324588 1198.63462 0.0063713 3.8249E-06 -2.19 -0.0013147 -2.1837 -0.0013109 600.3239157154248 42.154 0.22671 37.47 37.317 37.544 -4.6846 22 14 2 0 0 0 0.015874 1 25380 25380 79.427 48.79 1 9859900 65741 445 43719 44714 76781 76781 0.04325086051812832 TPVEEVEAL 9 Unmodified _TPVEEVEAL_ 0 0 0 ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B ENSG00000107929|ENST00000316157|LARP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 986.5045166015625 1 986.504068 985.496792 0.63222 0.00062369 -0.36853 -0.00036356 0.26369 0.00026013 986.5035865086329 54.191 0.24057 54.191 54.111 54.352 0 18 10 2 0 0 0 0.0090851 1 30070 30070 85.357 27.885 1 2152400 65742 2531 43720 44715 76782 76782 0.003463377325147121 TPVEKLTDY 9 Unmodified _TPVEKLTDY_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7794799804688 2 533.276772 1064.53899 0.26023 0.00013877 0.1074 5.7275E-05 0.36763 0.00019605 533.7783520612072 37.539 0.35379 37.539 37.389 37.743 0 47 18 4 0 0 0 0.015688 1 19960 19960 67.838 20.089 1 27953000 65743 5017 43721 44716 76783 76783 0.009303131409069465 TPVELALHQL 10 Unmodified _TPVELALHQL_ 0 0 0 REV__ENST00000306984.6_1_7:40172444-40172480:-|nuORF REV__ENST00000306984.6_1_7:40172444-40172480:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.2174072265625 3 374.21688 1119.62881 NaN NaN NaN NaN NaN NaN NaN 92.258 1 86.083 85.583 86.583 -6.1757 0 0 0 0.94014 1 61007 61007 3.3196 0 1 + 65744 25385 43722 44717 76784 76784 0.07377987540144204 TPVEPELSQR 10 Unmodified _TPVEPELSQR_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.8052978515625 2 578.303852 1154.59315 0.59756 0.00034557 -0.031497 -1.8215E-05 0.56606 0.00032736 578.3039148665439 74.075 0.51372 74.075 73.738 74.252 0 50 23 4 0 0 0 0.54083 1 41249 41249 16.149 3.9084 1 2276100 + 65745 24696 43723 44718 76785 76785 0.022039052924583302 TPVETIELT 9 Unmodified _TPVETIELT_ 0 0 0 ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD ENSG00000084774|ENST00000264705|CAD MSMS AL20221201_MKP_PDAC_01 4 501.771484375 2 501.771322 1001.52809 NaN NaN NaN NaN NaN NaN NaN 84.553 1 78.378 77.878 78.878 -6.1757 0 0 0 0.08978 1 55635 55635 46.021 13.715 1 65746 1399 43724 44719 76786 76786 0.02738910766618119 TPVFGKGVAY 10 Unmodified _TPVFGKGVAY_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7850952148438 2 519.784567 1037.55458 1.1615 0.00060371 -2.0583 -0.0010699 -0.89689 -0.00046619 519.7829742938211 50.561 0.3247 45.022 44.76 45.085 -5.5391 44 20 3 0 0 0 0.014503 1 31633 31633 80.676 48.371 1 46649000 65747 259 43725 44720 76787 76787 0.03730644448637577 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.8654174804688 3 356.86607 1067.57638 NaN NaN NaN NaN NaN NaN NaN 27.323 1 27.323 26.823 27.823 0 0 0 0 0.41144 1 14073 14073 14.218 7.1164 1 65748 5439 43726 44721 76788 76788 0.045294491971844764 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7954711914062 2 534.795466 1067.57638 0.41678 0.00022289 0.25162 0.00013456 0.66839 0.00035745 534.7957621855838 27.239 0.12498 27.192 27.122 27.247 -0.046408 11 5 3 0 0 0 0.0094097 1 14041 14041 82.529 18.293 1 6492100 65749 5439 43726 44721 76789 76789 0.045294491971844764 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8656616210938 3 356.86607 1067.57638 0.1496 5.3389E-05 -0.36363 -0.00012977 -0.21402 -7.6378E-05 356.8659348348734 27.141 0.18476 27.17 27.077 27.261 0.028662 16 8 3 0 0 0 0.010611 1 14084 14084 63.227 43.866 1 20909000 65750 5439 43726 44721 76790 76790 0.045294491971844764 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7957153320312 2 534.795466 1067.57638 0.25458 0.00013615 -0.24812 -0.00013269 0.0064653 3.4576E-06 534.7956008739758 27.116 0.14372 27.144 27.077 27.22 0.028664 9 6 2 0 0 0 0.0087873 1 14090 14090 103.35 39.117 1 13721000 65751 5439 43726 44721 76791 76791 0.045294491971844764 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8673400878906 3 356.86607 1067.57638 1.4609 0.00052136 0.64991 0.00023193 2.1109 0.00075329 356.8663597679967 30.2 0.40561 26.703 26.53 26.936 -3.497 54 19 4 0 0 0 0.0082353 2 16963 16963;17085 78.06 44.616 1 128250000 65752 5439 43726 44721 76792;76793 76792 0.045294491971844764 TPVFSKARY 9 Unmodified _TPVFSKARY_ 0 0 0 nc|ENSG00000142676|P62913-2|RPL11;ENSG00000142676|ENST00000643754|RPL11;ENST00000482370.1_1_1:24019089-24022860:+|nuORF nc|ENSG00000142676|P62913-2|RPL11 nc|ENSG00000142676|P62913-2|RPL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7960205078125 2 534.795466 1067.57638 0.70599 0.00037756 1.0502 0.00056162 1.7562 0.00093918 534.7960216569204 30.199 0.34228 26.702 26.553 26.895 -3.497 34 16 3 0 0 0 0.0082548 1 16983 16983 96.367 41.593 1 49265000 65753 5439 43726 44721 76794 76794 0.045294491971844764 TPVFTDWYKTP 11 Unmodified _TPVFTDWYKTP_ 0 0 0 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant;nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8353881835938 2 677.837528 1353.6605 0.11797 7.9963E-05 -3.1009 -0.0021019 -2.9829 -0.0020219 677.83523102711 39.304 0.47935 39.304 38.99 39.469 0 29 22 2 0 0 0 0.70705 1 21090 21090 7.1017 3.8204 1 1006500 65754 5365 43727 44722 76795 76795 -0.002180644965847023 TPVFTDWYKTP 11 Unmodified _TPVFTDWYKTP_ 0 0 0 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant;nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.336181640625 2 677.837528 1353.6605 -0.48062 -0.00032578 -2.3014 -0.0015599 -2.782 -0.0018857 677.8357749861502 35.921 0.27344 35.699 35.519 35.793 -0.2224 24 11 3 0 0 0 0.60536 1 18825 18825 18.373 2.224 1 5634800 65755 5365 43727 44722 76796 76796 -0.002180644965847023 TPVFTDWYKTP 11 Unmodified _TPVFTDWYKTP_ 0 0 0 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant;nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15 FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant FBXO15|p.N396Ifs*25|1|0.19|ENSG00000141665|chr18:74082003-74082003|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.8365478515625 2 677.837528 1353.6605 -0.17438 -0.0001182 -1.5165 -0.0010279 -1.6909 -0.0011461 677.8362778962953 37.466 0.73558 37.195 36.686 37.422 -0.27133 67 30 4 0 0 0 0.44612 3 19638 19539;19638;19741 23.79 11.549 1 12271000 65756 5365 43727 44722 76797;76798;76799 76798 -0.002180644965847023 TPVGDVFEL 9 Unmodified _TPVGDVFEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 976.4989013671875 1 976.498589 975.491313 0.1264 0.00012343 0.50869 0.00049674 0.63509 0.00062016 976.4989581101265 79.216 0.30843 79.216 79.041 79.35 0 23 13 2 0 0 0 0.013323 2 44037 43937;44037 71.134 31.176 1 1649500 65757 3388 43728 44723 76800;76801 76801 0.002586589407201245 TPVGDVFEL 9 Unmodified _TPVGDVFEL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7528686523438 2 488.752933 975.491313 0.2147 0.00010494 0.0087139 4.2589E-06 0.22342 0.0001092 488.7529919680947 79.215 0.35255 79.215 78.997 79.35 0 24 15 2 0 0 0 0.41742 1 43969 43969 11.64 0 1 1056900 65758 3388 43728 44723 76802 76802 0.002586589407201245 TPVGLIVSH 9 Unmodified _TPVGLIVSH_ 0 0 0 ENSG00000136718|ENST00000259239|IMP4;ENST00000460766.5_1_2:131100637-131104038:+|nuORF ENSG00000136718|ENST00000259239|IMP4 ENSG00000136718|ENST00000259239|IMP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7716674804688 2 461.77146 921.528367 1.0431 0.00048167 -0.68856 -0.00031796 0.35453 0.00016371 461.7711005055197 50.095 0.47662 44.556 44.299 44.775 -5.5391 51 30 2 0 0 0 0.0071894 1 31379 31379 111.29 49.93 1 27084000 65759 4849 43729 44724 76803 76803 0.0644637527714167 TPVGSSYGDLL 11 Unmodified _TPVGSSYGDLL_ 0 0 0 nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7802124023438 2 554.779679 1107.5448 0.44347 0.00024603 0.23967 0.00013297 0.68315 0.000379 554.7796747578229 62.669 0.27637 62.669 62.569 62.846 0 22 11 3 0 0 0 0.13715 1 34949 34949 38.176 20.029 1 1515600 65760 6052 43730 44725 76804 76804 -0.00466588347421748 TPVHPACGSR 10 Unmodified _TPVHPACGSR_ 0 0 0 REV__ENST00000425630.1_1_10:1209668-1209800:+|nuORF REV__ENST00000425630.1_1_10:1209668-1209800:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7949829101562 2 512.753276 1023.492 0.36867 0.00018904 3.8037 0.0019504 4.1724 0.0021394 512.7555091406143 33.841 0.21109 33.87 33.72 33.931 0.028934 17 8 3 0 0 0 0.22149 1 17774 17774 14.838 0 1 1941300 + 65761 26897 43731 44726 76805 76805 -0.018808248912250747 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.8779907226562 3 354.877975 1061.6121 -0.57502 -0.00020406 0.54421 0.00019313 -0.030808 -1.0933E-05 354.8781274414065 34.62 0.31274 34.62 34.46 34.773 0 47 15 4 0 0 0 0.1685 1 18212 18212 30.703 23.094 1 13768000 65762 4148 43732 44727 76806 76806 0.08375486654176711 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.8781127929688 3 354.877975 1061.6121 -0.31984 -0.00011351 0.57019 0.00020235 0.25035 8.8844E-05 354.8781080996626 34.771 0.30503 34.58 34.417 34.722 -0.19131 34 13 3 0 0 0 0.13231 1 18156 18156 34.222 21.366 1 12955000 65763 4148 43732 44727 76807 76807 0.08375486654176711 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.8130493164062 2 531.813325 1061.6121 -0.35194 -0.00018717 0.14123 7.5108E-05 -0.21071 -0.00011206 531.8134680470674 34.752 0.23722 34.561 34.44 34.677 -0.19131 20 10 3 0 0 0 0.011739 1 18165 18165 75.571 31.712 1 4005200 65764 4148 43732 44727 76808 76808 0.08375486654176711 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8777465820312 3 354.877975 1061.6121 -0.0056236 -1.9957E-06 0.48346 0.00017157 0.47784 0.00016957 354.87818155336095 34.515 0.2812 34.542 34.367 34.648 0.027405 24 12 3 0 0 0 0.40476 1 18195 18195 12.175 7.2777 1 1705400 65765 4148 43732 44727 76809 76809 0.08375486654176711 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.87841796875 3 354.877975 1061.6121 1.5729 0.00055818 0.15831 5.6179E-05 1.7312 0.00061436 354.87801413556724 39.124 0.47037 34.673 34.459 34.929 -4.4509 102 29 5 0 0 0 0.13231 2 23084 23084;23223 34.222 21.366 1 148690000 65766 4148 43732 44727 76810;76811 76810 0.08375486654176711 TPVKDLVKY 9 Unmodified _TPVKDLVKY_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1;nc|ENSG00000129534|Q6P0N0-2|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.8132934570312 2 531.813325 1061.6121 0.85981 0.00045726 -1.4381 -0.0007648 -0.57829 -0.00030754 531.8130153845308 39.146 0.47404 34.695 34.506 34.98 -4.4509 75 29 3 0 0 0 0.0094802 1 23165 23165 81.915 43.941 1 60190000 65767 4148 43732 44727 76812 76812 0.08375486654176711 TPVKQENSF 9 Unmodified _TPVKQENSF_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7681274414062 2 525.266739 1048.51892 0.017092 8.978E-06 0.2531 0.00013295 0.2702 0.00014193 525.2667032101779 21.788 0.19389 21.788 21.66 21.854 0 51 32 2 0 0 0 0.30202 2 11022 11007;11022 17.113 6.289 1 865360 65768 9846 43733 44728 76813;76814 76814 -0.00339437799038933 TPVKQENSF 9 Unmodified _TPVKQENSF_ 0 0 0 nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA nc|ENSG00000196588|Q969V6|MRTFA nc|ENSG00000196588|Q969V6|MRTFA MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2670288085938 2 525.266739 1048.51892 0.30346 0.0001594 -0.12971 -6.813E-05 0.17375 9.1267E-05 525.2669269212454 24.623 0.23824 21.74 21.578 21.817 -2.8831 17 12 2 0 0 0 0.012228 1 13389 13389 74.2 40.097 1 2330200 65769 9846 43733 44728 76815 76815 -0.00339437799038933 TPVLEPTKVTF 11 Unmodified _TPVLEPTKVTF_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3497924804688 2 616.350271 1230.68599 0.3575 0.00022035 -0.41251 -0.00025425 -0.055008 -3.3904E-05 616.3499214097523 59.903 0.29355 59.412 59.293 59.586 -0.49079 33 14 3 0 0 0 3.9096E-06 1 32588 32588 105.35 59.646 1 6382000 65770 16181 43734 44729 76816 76816 0.07987410025839381 TPVLSDNIML 10 Unmodified _TPVLSDNIML_ 0 0 0 REV__nc|ENSG00000175497|Q8N608-4|DPP10 REV__nc|ENSG00000175497|Q8N608-4|DPP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7681884765625 2 551.794275 1101.574 NaN NaN NaN NaN NaN NaN NaN 22.025 1 22.025 21.525 22.525 0 0 0 0 0.97302 1 11189 11189 3.5965 0.60125 1 + 65771 22874 43735 44730 76817 76817 0.027272326771935695 TPVMCSHFAQ 10 Unmodified _TPVMCSHFAQ_ 0 0 0 nc|ENSG00000146757|Q03936-2|ZNF92;ENSG00000146757|ENST00000328747|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 nc|ENSG00000146757|Q03936-2|ZNF92 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.82958984375 2 560.749344 1119.48414 0.46884 0.0002629 -2.5431 -0.001426 -2.0742 -0.0011631 560.7479775715371 99.854 0.14113 93.678 93.574 93.715 -6.1757 17 10 2 0 0 0 0.22811 1 66570 66570 14.838 0 1 22554000 65772 5793 43736 44731 76818 76818 -0.07082720203015924 TPVMIITEF 9 Oxidation (M) _TPVM(Oxidation (M))IITEF_ TPVM(1)IITEF TPVM(42)IITEF 0 0 1 nc|ENSG00000133216|P29323|EPHB2;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2 nc|ENSG00000133216|P29323|EPHB2 nc|ENSG00000133216|P29323|EPHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7784423828125 2 533.778093 1065.54163 0.81277 0.00043384 -0.27025 -0.00014425 0.54252 0.00028959 533.7780783580985 80.671 0.66669 80.179 79.776 80.443 -0.49248 70 27 3 0 0 0 0.06187 1 44171 44171 42.095 21.223 1 2976300 65773 16197 43737 44732 76819 76819 1807 0.011484452742024587 TPVMIITEF 9 Unmodified _TPVMIITEF_ 0 0 0 nc|ENSG00000133216|P29323|EPHB2;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2 nc|ENSG00000133216|P29323|EPHB2 nc|ENSG00000133216|P29323|EPHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7813110351562 2 525.780636 1049.54672 0.33965 0.00017858 0.21898 0.00011514 0.55863 0.00029372 525.7806808983147 91.025 0.22392 90.531 90.44 90.663 -0.49458 22 10 3 0 0 0 0.55144 1 49776 49776 4.3292 1.7518 1 815370 65774 16197 43737 44733 76820 76820 0.023927491368112896 TPVMIITEF 9 Unmodified _TPVMIITEF_ 0 0 0 nc|ENSG00000133216|P29323|EPHB2;ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2 nc|ENSG00000133216|P29323|EPHB2 nc|ENSG00000133216|P29323|EPHB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 525.780636 1049.54672 0.33965 0.00017858 0.21898 0.00011514 0.55863 0.00029372 525.7806808983147 91.025 0.22392 90.531 90.44 90.663 -0.49458 0 0 NaN 4.3292 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 815370 65775 16197 43737 44733 0.023927491368112896 TPVNFLHY 8 Unmodified _TPVNFLHY_ 0 0 0 ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2544250488281 2 495.75581 989.497067 -0.20839 -0.00010331 -1.5635 -0.00077514 -1.7719 -0.00087845 495.75590012976437 23.864 0.47951 23.864 23.659 24.138 0 62 23 4 0 0 0 0.80722 1 12100 12100 2.3027 0 1 3267700 65776 3418 43738 44734 76821 76821 0.0018980224303959403 TPVNIDGAHAQ 11 Unmodified _TPVNIDGAHAQ_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7813720703125 2 561.780544 1121.54654 2.0444 0.0011485 -0.1955 -0.00010983 1.8489 0.0010387 561.7804495534536 92.634 0.48787 92.664 92.417 92.905 0.03019 46 18 3 0 0 0 0.30985 1 51570 51570 26.268 1.5943 1 6749600 65777 8482 43739 44735 76822 76822 -0.009375345388207279 TPVNIDGAHAQ 11 Unmodified _TPVNIDGAHAQ_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 561.780544 1121.54654 0.5967 0.00033521 -0.61483 -0.0003454 -0.01813 -1.0185E-05 562.2833852742964 92.727 0.28781 92.269 92.088 92.376 -0.4574 -0.19763 -0.00046563 NaN 26.268 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 525260 65778 8482 43739 44735 -0.009375345388207279 TPVNLTNHSY 10 Unmodified _TPVNLTNHSY_ 0 0 0 ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2828979492188 2 573.28292 1144.55129 -0.22118 -0.0001268 0.61253 0.00035116 0.39136 0.00022436 573.2831727340367 33.262 0.21592 33.262 33.13 33.345 0 16 10 2 0 0 0 0.0052757 1 17438 17438 97.741 73.94 1 1998400 65779 5565 43740 44736 76823 76823 -0.015206503960371265 TPVNLTNHSY 10 Unmodified _TPVNLTNHSY_ 0 0 0 ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.2828369140625 2 573.28292 1144.55129 -0.092712 -5.315E-05 0.85127 0.00048802 0.75855 0.00043487 573.2832150035224 33.342 0.15256 33.183 33.118 33.27 -0.15918 10 5 2 0 0 0 0.30444 1 17413 17413 27.223 14.983 1 1068800 65780 5565 43740 44736 76824 76824 -0.015206503960371265 TPVNLTNHSY 10 Unmodified _TPVNLTNHSY_ 0 0 0 ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2835693359375 2 573.28292 1144.55129 1.1821 0.0006777 1.2057 0.0006912 2.3878 0.0013689 573.2830666770191 37.903 0.30735 33.534 33.348 33.655 -4.3689 27 17 2 0 0 0 4.1804E-08 1 22282 22282 146.68 98.931 1 11966000 65781 5565 43740 44736 76825 76825 -0.015206503960371265 TPVPADGTQTL 11 Unmodified _TPVPADGTQTL_ 0 0 0 ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF ENSG00000013810|ENST00000313288|TACC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2879638671875 2 550.285128 1098.5557 0.38735 0.00021316 0.85682 0.0004715 1.2442 0.00068465 550.2857805436223 39.65 0.18654 39.65 39.553 39.74 0 16 8 2 0 0 0 0.0047291 1 21244 21244 75.761 10.526 1 4097300 65782 482;14155 43741 44737 76826 76826 0.01036814026861066 TPVPGGTYR 9 Unmodified _TPVPGGTYR_ 0 0 0 nc|ENSG00000104970|Q9H7L2|KIR3DX1 nc|ENSG00000104970|Q9H7L2|KIR3DX1 nc|ENSG00000104970|Q9H7L2|KIR3DX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8759155273438 2 474.250892 946.48723 0.059773 2.8348E-05 1.3842 0.00065647 1.444 0.00068482 474.25076108024143 45.392 0.2389 45.392 45.288 45.527 0 26 13 3 0 0 0 0.19891 1 24763 24763 11.64 1.4569 1 17756000 65783 16101 43742 44738 76827 76827 0.011846142376612079 TPVPPPPPVAQ 11 Unmodified _TPVPPPPPVAQ_ 0 0 0 REV__ENST00000496189.1_1_22:30748938-30752805:-|nuORF REV__ENST00000496189.1_1_22:30748938-30752805:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7828369140625 2 550.310949 1098.60735 0.0083802 4.6117E-06 -3.5201 -0.0019372 -3.5117 -0.0019325 550.3092864628387 41.343 0.2233 41.04 40.909 41.132 -0.30304 20 10 2 0 0 0 0.29134 1 21850 21850 12.241 0 1 2957900 + 65784 17999 43743 44739 76828 76828 0.06198602511403806 TPVPSPEYV 9 Unmodified _TPVPSPEYV_ 0 0 0 nc|ENSG00000094975|Q9UBS9-2|SUCO;ENSG00000094975|ENST00000263688|SUCO;SUCO|p.N1035Ifs*2|1|0.18|ENSG00000094975|chr1:172602147-172602157|AAATACTTCTC/-|frameshift_variant nc|ENSG00000094975|Q9UBS9-2|SUCO nc|ENSG00000094975|Q9UBS9-2|SUCO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 989.501708984375 1 988.498589 987.491313 0.29139 0.00028803 -0.051162 -5.0573E-05 0.24022 0.00023746 988.4985102628664 49.245 0.39889 49.245 49.042 49.441 0 30 18 2 0 0 0 0.5029 1 27023 27023 7.2892 0 1 2750500 65785 1640 43744 44740 76829 76829 -0.0029334105928455756 TPVPSVNEL 9 Unmodified _TPVPSVNEL_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000488913.1_1_1:62330125-62341043:+|nuORF;ENST00000493967.1_1_1:62330125-62331056:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2588806152344 2 478.258382 954.502212 0.93934 0.00044925 0.1391 6.6524E-05 1.0784 0.00051577 478.258420131108 54.388 0.35399 54.388 54.222 54.576 0 37 15 3 0 0 0 0.010818 2 30151 30151;30259 78.149 29.804 1 9021700 65786 4457;16195 43745 44741 76830;76831 76830 0.023140613149848832 TPVPSVNEL 9 Unmodified _TPVPSVNEL_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000488913.1_1_1:62330125-62341043:+|nuORF;ENST00000493967.1_1_1:62330125-62331056:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 955.5108642578125 1 955.509488 954.502212 0.53152 0.00050787 0.38402 0.00036694 0.91554 0.00087481 955.5102650107611 54.382 0.21365 54.382 54.271 54.484 0 14 9 2 0 0 0 0.018061 1 30182 30182 65.474 25.524 1 1622100 65787 4457;16195 43745 44741 76832 76832 0.023140613149848832 TPVPSVNEL 9 Unmodified _TPVPSVNEL_ 0 0 0 nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;ENST00000488913.1_1_1:62330125-62341043:+|nuORF;ENST00000493967.1_1_1:62330125-62331056:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ;nc|ENSG00000132849|Q8NI35-2|PATJ nc|ENSG00000132849|Q8NI35|PATJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2589416503906 2 478.258382 954.502212 1.1812 0.00056493 0.63263 0.00030256 1.8138 0.00086749 478.2587693261704 62.363 0.37622 56.187 56.002 56.378 -6.1757 26 20 2 0 0 0 0.0088174 1 40230 40230 103.75 39.512 1 18461000 65788 4457;16195 43745 44741 76833 76833 0.023140613149848832 TPVQALVQCR 10 Unmodified _TPVQALVQCR_ 0 0 0 REV__ENST00000361618.3_1_4:170927113-170947402:-|nuORF REV__ENST00000361618.3_1_4:170927113-170947402:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8049926757812 2 557.805508 1113.59646 1.008 0.00056226 -0.67665 -0.00037744 0.33133 0.00018482 557.8052615777937 32.537 0.37115 28.681 28.533 28.904 -3.8562 57 19 4 0 0 0 0.29752 2 18472 18472;18592 27.629 8.3718 1 54977000 + 65789 25929 43746 44742 76834;76835 76834 0.04420876865469836 TPVRTGHGYVY 11 Unmodified _TPVRTGHGYVY_ 0 0 0 nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 nc|ENSG00000111859|Q14511-3|NEDD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.5494689941406 3 417.21565 1248.62512 0.12002 5.0074E-05 -0.23369 -9.7497E-05 -0.11367 -4.7423E-05 417.21598906946747 24.428 0.13319 24.426 24.32 24.454 -0.0016747 8 5 2 0 0 0 0.70435 1 12489 12489 3.8459 1.3474 1 1301800 65790 2837 43747 44743 76836 76836 0.01075317766299122 TPVSRQCFICK 11 Carbamidomethyl (C) _TPVSRQC(Carbamidomethyl (C))FICK_ TPVSRQC(0.5)FIC(0.5)K TPVSRQC(0)FIC(0)K 0 1 0 REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.8365478515625 2 669.836482 1337.65841 -0.1742 -0.00011668 2.1682 0.0014523 1.994 0.0013356 669.8379486387789 42.025 0.24094 41.718 41.597 41.838 -0.30682 19 11 2 0 0 0 0.10451 1 22291 22291 41.956 10.687 2 13520000 + 65791 29049 43748 44744 76837 76837 1062;1063 0.0030886022229879018 TPVSRQCFICK 11 Carbamidomethyl (C) _TPVSRQC(Carbamidomethyl (C))FICK_ 0 1 0 REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 669.836482 1337.65841 -0.47244 -0.00031645 2.5489 0.0017074 2.0765 0.0013909 669.8382065817829 41.685 0.22906 41.685 41.556 41.785 0 -0.016761 0.00014926 NaN 41.956 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6337000 + 65792 29049 43748 44744 1062;1063 0.0030886022229879018 TPVSRQCFICK 11 Carbamidomethyl (C) _TPVSRQC(Carbamidomethyl (C))FICK_ 0 1 0 REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF REV__ENST00000578926.1_1_7:86811567-86815316:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 669.836482 1337.65841 -0.1742 -0.00011668 2.1682 0.0014523 1.994 0.0013356 669.8379486387789 42.025 0.24094 41.718 41.597 41.838 -0.30682 0.016761 -0.00036084 NaN 41.956 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 13520000 + 65793 29049 43748 44744 1062;1063 0.0030886022229879018 TPVSSANMM 9 Unmodified _TPVSSANMM_ 0 0 0 ENSG00000101266|ENST00000217244|CSNK2A1;nc|ENSG00000101266|P68400-2|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 ENSG00000101266|ENST00000217244|CSNK2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 937.4113159179688 1 937.411765 936.404488 0.40384 0.00037856 0.24101 0.00022592 0.64485 0.00060449 937.4119909419935 40.459 0.22597 35.93 35.824 36.05 -4.5294 19 13 2 0 0 0 0.0055767 1 24152 24152 115.69 87.205 1 5872000 65794 1938 43749 44745 76838 76838 -0.06625786876998063 TPVSSDHLF 9 Unmodified _TPVSSDHLF_ 0 0 0 ENSG00000165516|ENST00000298307|KLHDC2;ENST00000555739.5_1_14:50246474-50249278:+|nuORF ENSG00000165516|ENST00000298307|KLHDC2 ENSG00000165516|ENST00000298307|KLHDC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7495422363281 2 501.748182 1001.48181 NaN NaN NaN NaN NaN NaN NaN 44.556 1 44.556 44.056 45.056 0 0 0 0 0.04157 1 24246 24246 61.357 40.943 1 65795 7353 43750 44746 76839 76839 -0.018871093448069587 TPVSYPLEL 9 Unmodified _TPVSYPLEL_ 0 0 0 nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP nc|ENSG00000178104|Q5VU43-13|PDE4DIP nc|ENSG00000178104|Q5VU43-13|PDE4DIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7765197753906 2 509.776408 1017.53826 NaN NaN NaN NaN NaN NaN NaN 74.396 1 74.396 73.896 74.896 0 0 0 0 0.7243 1 41398 41398 8.5933 2.8329 1 65796 16411 43751 44747 76840 76840 0.0301951849183979 TPVTAYDLY 9 Unmodified _TPVTAYDLY_ 0 0 0 nc|ENSG00000242515|Q9HAW8-2|UGT1A10;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000242515|ENST00000344644|UGT1A10;ENSG00000242366|ENST00000373450|UGT1A8;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;ENSG00000244122|ENST00000373426|UGT1A7 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 nc|ENSG00000242515|Q9HAW8-2|UGT1A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7569580078125 2 521.758215 1041.50188 0.64582 0.00033696 -0.37742 -0.00019692 0.2684 0.00014004 521.758071156284 57.784 0.3555 57.784 57.657 58.012 0 28 15 2 0 0 0 0.016184 1 32154 32154 67.344 37.119 1 5588900 65797 10696 43752 44748 76841 76841 -0.017213584048704433 TPVTEEDQI 9 Unmodified _TPVTEEDQI_ 0 0 0 nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 nc|ENSG00000118482|Q92576-2|PHF3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7822875976562 2 516.248212 1030.48187 0.1591 8.2134E-05 2.44 0.0012596 2.5991 0.0013418 516.2493541655884 55.787 0.45624 55.309 54.945 55.401 -0.47798 39 21 2 0 0 0 0.18118 1 30241 30241 7.9102 0 1 2880400 65798 3374 43753 44749 76842 76842 -0.0321515413547786 TPVTNVSPMHL 11 Unmodified _TPVTNVSPMHL_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.210693359375 3 399.209508 1194.60669 0.83854 0.00033475 -0.098189 -3.9198E-05 0.74035 0.00029556 399.2095909492087 35.239 0.42986 31.144 30.869 31.299 -4.0951 62 25 4 0 0 0 0.48615 1 20492 20492 9.7643 0 1 32514000 65799 2474 43754 44750 76843 76843 0.017174398000634028 TPVTSSTADVF 11 Unmodified _TPVTSSTADVF_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17 ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7794189453125 2 562.777136 1123.53972 0.43514 0.00024488 0.96749 0.00054448 1.4026 0.00078937 562.777763090831 50.567 0.3124 50.567 50.411 50.724 0 28 14 3 0 0 0 2.9767E-06 1 27875 27875 99.799 77.063 1 6015000 65800 7922 43755 44751 76844 76844 -0.017108922100533164 TPVTTSTVL 9 Unmodified _TPVTTSTVL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 918.5137939453125 1 918.514239 917.506963 0.80456 0.000739 -0.78511 -0.00072114 0.019449 1.7865E-05 918.5131916939579 46.155 0.27623 46.155 46.018 46.294 0 19 12 2 0 0 0 0.0090851 1 25201 25201 85.357 0 1 3038100 65801 5669 43756 44752 76845 76845 0.04490945457757789 TPVTTSTVL 9 Unmodified _TPVTTSTVL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.7604370117188 2 459.760758 917.506963 1.244 0.00057194 -1.5229 -0.00070016 -0.27889 -0.00012822 459.7602932381255 46.174 0.33847 46.174 45.974 46.313 0 25 15 2 0 0 0 0.023164 1 25211 25211 60.39 9.5345 1 9735500 65802 5669 43756 44752 76846 76846 0.04490945457757789 TPVTTSTVL 9 Unmodified _TPVTTSTVL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5206909179688 1 918.514239 917.506963 0.24578 0.00022575 -0.21275 -0.00019541 0.03303 3.0338E-05 918.5141999733036 57.204 0.32219 56.715 56.579 56.901 -0.48974 31 14 3 0 0 0 0.5029 1 31126 31126 7.2892 0 1 6256600 65803 5669 43756 44752 76847 76847 0.04490945457757789 TPVTTSTVL 9 Unmodified _TPVTTSTVL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20221201_MKP_PDAC_01 4 459.7613525390625 2 459.760758 917.506963 NaN NaN NaN NaN NaN NaN NaN 53.608 1 47.803 47.303 48.303 -5.8042 0 0 0 0.020354 1 33904 33904 77.984 20.513 1 65804 5669 43756 44752 76848 76848 0.04490945457757789 TPVVKSAL 8 Unmodified _TPVVKSAL_ 0 0 0 nc|ENSG00000110330|Q13490-2|BIRC2;ENSG00000110330|ENST00000227758|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 nc|ENSG00000110330|Q13490-2|BIRC2 MSMS AL20221201_MKP_PDAC_01 4 407.7557983398438 2 407.755278 813.496004 NaN NaN NaN NaN NaN NaN NaN 35.218 1 31.122 30.622 31.622 -4.0951 0 0 0 0.81255 1 20400 20400 22.736 3.4793 1 65805 2713 43757 44753 76849 76849 0.08179587874133176 TPVVNQVKV 9 Unmodified _TPVVNQVKV_ 0 0 0 nc|ENSG00000165240|Q04656-4|ATP7A;nc|ENSG00000165240|Q04656-5|ATP7A;ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A nc|ENSG00000165240|Q04656-4|ATP7A nc|ENSG00000165240|Q04656-4|ATP7A MSMS AL20221201_MKP_PDAC_01 4 492.3010864257812 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 49.529 1 44.133 43.633 44.633 -5.3961 0 0 0 0.70001 1 30953 30953 9.3831 2.0939 1 65806 7313 43758 44754 76850 76850 0.08914333339942004 TPVVPQKA 8 Unmodified _TPVVPQKA_ 0 0 0 REV__ENSG00000176092|ENST00000308182|CRYBG2 REV__ENSG00000176092|ENST00000308182|CRYBG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.755859375 2 420.252903 838.491253 1.3611 0.00057202 1.9798 0.00083203 3.341 0.0014041 420.25364541543627 71.971 0.35921 65.795 65.619 65.979 -6.1757 29 19 2 0 0 0 8.7369 1 47062 47062 12.532 0 1 17414000 + 65807 22909 43759 44755 76851 76851 0.06554703731364953 TPVYSLQWRHR 11 Unmodified _TPVYSLQWRHR_ 0 0 0 ENST00000593393.1_1_19:58918084-58918282:-|nuORF ENST00000593393.1_1_19:58918084-58918282:-|nuORF ENST00000593393.1_1_19:58918084-58918282:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.5932312011719 3 481.593232 1441.75787 -0.073323 -3.5312E-05 -0.25235 -0.00012153 -0.32568 -0.00015684 481.5931238174805 35.948 0.18943 35.973 35.885 36.075 0.024971 14 8 2 0 0 0 0.71728 1 19037 19037 2.6312 0 1 2395000 65808 15734 43760 44756 76852 76852 0.05465762222934245 TPWDSIKLTF 10 Unmodified _TPWDSIKLTF_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3219604492188 2 604.321514 1206.62847 -0.25213 -0.00015237 -0.3045 -0.00018402 -0.55663 -0.00033638 604.3216855256345 84.853 0.21122 84.916 84.838 85.05 0.063171 13 8 2 0 0 0 2.1067E-22 1 46977 46977 190.03 126.07 1 17046000 65809 1687 43761 44757 76853 76853 0.03342567820277509 TPWDSIKLTF 10 Unmodified _TPWDSIKLTF_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3214111328125 2 604.321514 1206.62847 0.7869 0.00047554 -4.2312 -0.002557 -3.4443 -0.0020815 604.3215901595264 98.003 0.41524 91.827 91.537 91.952 -6.1757 78 27 6 0 0 0 0.0027451 2 64917 64905;64917 105.35 75.505 1 159480000 65810 1687 43761 44757 76854;76855 76855 0.03342567820277509 TPWETLVVF 9 Unmodified _TPWETLVVF_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.80078125 2 546.292225 1090.5699 1.1866 0.00064823 2.6935 0.0014714 3.8801 0.0021197 546.2949490942485 101.09 0.13524 94.918 94.869 95.004 -6.1757 11 7 3 0 0 0 0.1474 1 67771 67771 28.487 3.0875 1 21664000 65811 5089 43762 44758 76856 76856 0.028235112458105505 TPWHRCSHL 9 Unmodified _TPWHRCSHL_ 0 0 0 ENST00000479202.5_1_21:46306285-46309037:-|nuORF ENST00000479202.5_1_21:46306285-46309037:-|nuORF ENST00000479202.5_1_21:46306285-46309037:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5181274414062 3 379.518787 1135.53453 -0.36091 -0.00013697 -0.13328 -5.0583E-05 -0.49419 -0.00018755 379.5184231334675 22.529 0.18875 22.529 22.423 22.611 0 20 8 3 0 0 0 0.51218 1 11453 11453 4.1895 0 1 1173500 65812 14032 43763 44759 76857 76857 -0.027814297629902285 TPWNQGATPAY 11 Unmodified _TPWNQGATPAY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.282958984375 2 603.28292 1204.55129 0.63735 0.0003845 0.079608 4.8026E-05 0.71696 0.00043253 603.2828068310739 47.478 0.26405 47.126 46.98 47.244 -0.3526 31 12 3 0 0 0 0.00028183 1 25437 25437 91.085 71.828 1 11559000 65813 8957 43764 44760 76858 76858 -0.04280650396026431 TPWNQGATPAY 11 Unmodified _TPWNQGATPAY_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2820434570312 2 603.28292 1204.55129 0.70388 0.00042464 -0.22767 -0.00013735 0.47621 0.00028729 603.2822865468455 54.222 0.42421 48.357 48.118 48.542 -5.8653 60 24 3 0 0 0 8.959E-09 2 34406 34270;34406 110.79 85.393 1 45306000 65814 8957 43764 44760 76859;76860 76860 -0.04280650396026431 TPWPHIVEF 9 Unmodified _TPWPHIVEF_ 0 0 0 nc|ENSG00000137760|Q96BT7-4|ALKBH8;ENSG00000137760|ENST00000428149|ALKBH8 nc|ENSG00000137760|Q96BT7-4|ALKBH8 nc|ENSG00000137760|Q96BT7-4|ALKBH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2905883789062 2 563.290017 1124.56548 0.012022 6.772E-06 1.1679 0.00065786 1.1799 0.00066463 563.2904159506925 76.829 0.36278 76.349 76.177 76.54 -0.47945 24 16 2 0 0 0 0.41742 1 42038 42038 11.64 3.7301 1 807690 65815 4964 43765 44761 76861 76861 0.008180468229056714 TPWQPPTVL 9 Unmodified _TPWQPPTVL_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MSMS AL20221201_MKP_PDAC_01 4 519.7839965820312 2 519.784567 1037.55458 NaN NaN NaN NaN NaN NaN NaN 82.179 1 76.003 75.503 76.503 -6.1757 0 0 0 0.059498 1 53976 53976 53.833 19.645 1 65816 5517 43766 44762 76862 76862 0.037306444486148393 TPWRGILLF 9 Unmodified _TPWRGILLF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8241577148438 2 551.824027 1101.6335 1.3065 0.00072094 -0.37046 -0.00020443 0.93602 0.00051652 551.8237785261506 91.95 0.46248 91.98 91.745 92.208 0.030197 52 16 4 0 0 0 0.024507 2 51186 51087;51186 55.503 31.482 1 39816000 65817 3445;4427;15642 43767 44763 76863;76864 76864 0.08674916473569283 TPWRGILLF 9 Unmodified _TPWRGILLF_ 0 0 0 ENSG00000119541|ENST00000238497|VPS4B;ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENST00000589604.5_1_18:61064221-61077532:-|nuORF;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B;ENST00000588059.5_1_18:61064418-61077532:-|nuORF;ENSG00000132612|ENST00000254950|VPS4A ENSG00000119541|ENST00000238497|VPS4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.824462890625 2 551.824027 1101.6335 0.96404 0.00053198 -0.55594 -0.00030678 0.4081 0.0002252 551.8240496839801 99.98 0.19518 93.804 93.703 93.898 -6.1757 59 13 6 0 0 0 0.024507 1 66751 66751 63.961 33.324 1 540790000 65818 3445;4427;15642 43767 44763 76865 76865 0.08674916473569283 TPWTPAVY 8 Unmodified _TPWTPAVY_ 0 0 0 ENST00000433510.2_1_17:46713640-46724167:-|nuORF ENST00000433510.2_1_17:46713640-46724167:-|nuORF ENST00000433510.2_1_17:46713640-46724167:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 467.7386169433594 2 467.737086 933.459619 NaN NaN NaN NaN NaN NaN NaN 22.966 1 20.187 19.687 20.687 -2.7784 0 0 0 0.73801 1 12394 12394 26.341 4.5946 1 65819 13294 43768 44764 76866 76866 -0.009772890225804076 TPWWPRYLRTR 11 Unmodified _TPWWPRYLRTR_ 0 0 0 ENST00000531791.1_1_11:65149642-65149978:-|nuORF ENST00000531791.1_1_11:65149642-65149978:-|nuORF ENST00000531791.1_1_11:65149642-65149978:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.9467163085938 3 511.280877 1530.8208 1.6797 0.00085879 -0.004033 -2.062E-06 1.6757 0.00085673 511.28216961429365 50.157 0.58942 50.108 49.886 50.475 -0.048828 71 28 4 0 0 0 0.73349 1 27064 27064 1.1098 0.6038 1 18503000 65820 14913 43769 44765 76867 76867 0.07662328010951569 TPYDKYGL 8 Unmodified _TPYDKYGL_ 0 0 0 REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7397155761719 2 478.739825 955.465098 0.23642 0.00011319 -1.7574 -0.00084135 -1.521 -0.00072817 478.7389271940823 64.163 0.32524 64.163 63.93 64.255 0 21 13 2 0 0 0 0.79669 1 35738 35738 8.5933 2.8329 1 890300 + 65821 18191 43770 44766 76868 76868 -0.01441610230756396 TPYDWESL 8 Unmodified _TPYDWESL_ 0 0 0 nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.27783203125 2 505.726915 1009.43928 1.2033 0.00060852 -1.5275 -0.0007725 -0.32425 -0.00016398 505.72624185458335 53.964 0.24879 48.099 48.034 48.283 -5.8653 17 13 2 0 0 0 8.7369 1 34195 34195 2.8892 0 1 8421300 65822 16658 43771 44767 76869 76869 -0.06506504473043151 TPYEGGFFLF 10 Unmodified _TPYEGGFFLF_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z;ENST00000513342.5_1_17:46990150-47004493:+|nuORF;nc|ENSG00000159202|Q9H832-2|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MSMS AL20221201_MKP_PDAC_01 4 589.2806396484375 2 589.281857 1176.54916 NaN NaN NaN NaN NaN NaN NaN 101.45 1 95.276 94.776 95.776 -6.1757 0 0 0 0.31648 1 68066 68066 36.127 15.673 1 65823 6634 43772 44768 76870 76870 -0.03205079133840627 TPYEGQRSY 9 Unmodified _TPYEGQRSY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7545166015625 2 550.753995 1099.49344 -0.14015 -7.7188E-05 -0.032046 -1.765E-05 -0.1722 -9.4837E-05 550.754115171075 20.093 0.50712 20.093 19.72 20.227 0 107 53 4 0 0 0 0.040683 2 10134 10034;10134 49.554 26.818 1 10619000 65824 293 43773 44769 76871;76872 76872 -0.05232912321457661 TPYEGQRSY 9 Unmodified _TPYEGQRSY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.754150390625 2 550.753995 1099.49344 0.12917 7.114E-05 0.00054507 3.002E-07 0.12971 7.1441E-05 550.7542948982709 20.011 0.10042 20.018 19.966 20.066 0.0078506 8 4 2 0 0 0 0.32235 1 10205 10205 16.149 0.30192 1 477150 65825 293 43773 44769 76873 76873 -0.05232912321457661 TPYEGQRSY 9 Unmodified _TPYEGQRSY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7559204101562 2 550.753995 1099.49344 0.5265 0.00028997 -0.033287 -1.8333E-05 0.49321 0.00027164 550.7540948513366 22.476 0.29384 19.697 19.498 19.792 -2.7784 39 15 3 0 0 0 0.0089732 2 12121 12018;12121 86.332 57.25 1 6078900 65826 293 43773 44769 76874;76875 76875 -0.05232912321457661 TPYFWLQLE 9 Unmodified _TPYFWLQLE_ 0 0 0 ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN ENSG00000205978|ENST00000382554|NYNRIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.8014526367188 2 598.802957 1195.59136 NaN NaN NaN NaN NaN NaN NaN 33.207 1 33.207 32.707 33.707 0 0 0 0 0.6032 1 17395 17395 12.532 1.7076 1 65827 10388 43774 44770 76876 76876 0.0013889627455228037 TPYGGQFERM 10 Oxidation (M) _TPYGGQFERM(Oxidation (M))_ TPYGGQFERM(1) TPYGGQFERM(57) 0 0 1 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.2684326171875 2 601.268955 1200.52336 -0.88933 -0.00053473 0.47845 0.00028768 -0.41088 -0.00024705 601.2693203208444 28.118 0.27021 28.118 28.001 28.271 0 51 16 4 0 0 0 0.053349 1 14524 14524 57.108 44.065 1 23835000 65828 7383 43775 44771 76877 76877 1276 -0.06888296647821335 TPYGGQFERM 10 Oxidation (M) _TPYGGQFERM(Oxidation (M))_ TPYGGQFERM(1) TPYGGQFERM(55) 0 0 1 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2699584960938 2 601.268955 1200.52336 0.57007 0.00034276 -0.29192 -0.00017552 0.27815 0.00016724 601.2685259199228 28.095 0.23825 28.048 27.875 28.113 -0.046408 11 8 2 0 0 0 0.061642 1 14492 14492 55.249 24.612 1 3538500 65829 7383 43775 44771 76878 76878 1276 -0.06888296647821335 TPYGGQFERM 10 Oxidation (M) _TPYGGQFERM(Oxidation (M))_ TPYGGQFERM(1) TPYGGQFERM(120) 0 0 1 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7694702148438 2 601.268955 1200.52336 -0.096705 -5.8146E-05 -0.068523 -4.1201E-05 -0.16523 -9.9346E-05 601.2692105853554 31.702 0.2797 28.007 27.927 28.206 -3.6958 31 15 3 0 0 0 3.9377E-05 2 17964 17964;18091 121.5 87.102 1 27478000 65830 7383 43775 44771 76879;76880 76879 1276 -0.06888296647821335 TPYGGQFERM 10 Unmodified _TPYGGQFERM_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.2724609375 2 593.271498 1184.52844 0.27565 0.00016353 -0.16808 -9.9715E-05 0.10757 6.3817E-05 593.2713666469223 44.08 0.41972 39.315 39.092 39.512 -4.7648 53 28 2 0 0 0 0.053349 2 26756 26756;26888 57.108 44.065 1 73740000 65831 7383 43775 44772 76881;76882 76881 -0.056439927851897664 TPYGGQFERM 10 Unmodified _TPYGGQFERM_ 0 0 0 nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 nc|ENSG00000165732|Q9NR30-2|DDX21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 593.271498 1184.52844 0.38858 0.00023053 -0.96362 -0.00057169 -0.57504 -0.00034115 593.2707609939803 38.916 0.15523 38.916 38.834 38.99 0 -0.19961 -0.00075186 NaN 57.108 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1608300 65832 7383 43775 44772 -0.056439927851897664 TPYGIVPDVY 10 Unmodified _TPYGIVPDVY_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2907104492188 2 562.28714 1122.55973 -0.035205 -1.9795E-05 1.9878 0.0011177 1.9526 0.0010979 562.2882443559029 71.028 0.25092 71.028 70.913 71.164 0 16 10 2 0 0 0 0.24625 1 39590 39590 30.637 7.4881 1 1072000 65833 10913 43776 44773 76883 76883 0.0033490352057015116 TPYGIVPDVY 10 Unmodified _TPYGIVPDVY_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2882690429688 2 562.28714 1122.55973 0.69648 0.00039162 1.4946 0.00084039 2.1911 0.001232 562.288575861568 71.589 0.39196 71.113 70.927 71.319 -0.47609 33 15 3 0 0 0 0.44373 1 39145 39145 19.257 11.968 1 1602100 65834 10913 43776 44773 76884 76884 0.0033490352057015116 TPYKGGNLY 9 Unmodified _TPYKGGNLY_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7584533691406 2 506.758549 1011.50255 0.014679 7.4387E-06 0.46785 0.00023708 0.48253 0.00024452 506.7587591472801 29.272 0.42998 29.272 29.002 29.432 0 54 20 4 0 0 0 0.011671 1 15137 15137 75.761 31.354 1 20922000 65835 5632 43777 44774 76885 76885 -0.002745189651477631 TPYKGGNLY 9 Unmodified _TPYKGGNLY_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7590942382812 2 506.758549 1011.50255 0.25883 0.00013116 0.37339 0.00018922 0.63222 0.00032038 506.75898075670034 29.269 0.14737 29.206 29.129 29.276 -0.06216 9 6 2 0 0 0 0.062454 1 15146 15146 41.956 15.614 1 3494900 65836 5632 43777 44774 76886 76886 -0.002745189651477631 TPYKGGNLY 9 Unmodified _TPYKGGNLY_ 0 0 0 nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7591857910156 2 506.758549 1011.50255 0.4547 0.00023042 0.1841 9.3294E-05 0.6388 0.00032372 506.7583530507529 32.922 0.67802 29.066 28.533 29.211 -3.8562 69 38 3 0 0 0 0.0086904 2 18925 18798;18925 107.19 58.841 1 60668000 65837 5632 43777 44774 76887;76888 76888 -0.002745189651477631 TPYPKLKTAL 10 Unmodified _TPYPKLKTAL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8980712890625 3 377.897258 1130.66995 1.1502 0.00043465 -0.2889 -0.00010917 0.86128 0.00032547 377.897234031674 43.748 0.43071 38.983 38.709 39.139 -4.7648 42 26 2 0 0 0 0.54174 1 26597 26597 14.171 7.9364 1 6069300 65838 2180 43778 44775 76889 76889 0.1098374857961062 TPYPSYFYHN 10 Unmodified _TPYPSYFYHN_ 0 0 0 REV__ENSG00000163902|ENST00000296255|RPN1 REV__ENSG00000163902|ENST00000296255|RPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.7850341796875 2 644.785296 1287.55604 -0.42405 -0.00027342 -0.59032 -0.00038063 -1.0144 -0.00065405 644.7848889598977 23.458 0.31549 23.458 23.307 23.623 0 24 15 2 0 0 0 0.6067 1 11933 11933 10.8 1.2555 1 666590 + 65839 21830 43779 44776 76890 76890 -0.07623766253277608 TPYQDGPDISY 11 Unmodified _TPYQDGPDISY_ 0 0 0 ENSG00000005700|ENST00000306270|IBTK;nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;ENST00000505222.5_1_6:82901346-82950269:-|nuORF;ENST00000445419.6_1_6:82904276-82914703:-|nuORF ENSG00000005700|ENST00000306270|IBTK ENSG00000005700|ENST00000306270|IBTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.2784423828125 2 628.2775 1254.54045 0.41341 0.00025974 1.6915 0.0010628 2.1049 0.0013225 628.2788971647655 47.331 0.25797 47.331 47.192 47.45 0 23 11 3 0 0 0 0.13335 1 25899 25899 38.615 20.468 1 2731300 65840 313 43780 44777 76891 76891 -0.0766409756097346 TPYQPRLLF 9 Unmodified _TPYQPRLLF_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8195190429688 2 567.818941 1133.62333 -0.073247 -4.1591E-05 0.32091 0.00018222 0.24766 0.00014063 567.8190477442488 85.712 0.2564 85.774 85.622 85.878 0.061646 15 9 2 0 0 0 0.044296 1 47465 47465 52.268 16.141 1 15520000 + 65841 20011 43781 44778 76892 76892 0.06186308748328884 TPYQPRLLF 9 Unmodified _TPYQPRLLF_ 0 0 0 REV__ENSG00000134780|ENST00000257215|DAGLA REV__ENSG00000134780|ENST00000257215|DAGLA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 567.818941 1133.62333 -0.073247 -4.1591E-05 0.32091 0.00018222 0.24766 0.00014063 567.8190477442488 85.712 0.2564 85.774 85.622 85.878 0.061646 0 0 NaN 52.268 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 15520000 + 65842 20011 43781 44778 0.06186308748328884 TPYRYQACR 9 Unmodified _TPYRYQACR_ 0 0 0 ENSG00000138073|ENST00000260643|PREB;ENST00000474802.1_1_2:27355436-27356101:-|nuORF;ENST00000468045.5_1_2:27354838-27356101:-|nuORF ENSG00000138073|ENST00000260643|PREB ENSG00000138073|ENST00000260643|PREB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.4872436523438 3 386.522197 1156.54476 0.33229 0.00012844 -0.97001 -0.00037493 -0.63772 -0.00024649 386.52180254717405 59.672 0.24458 59.181 59.048 59.293 -0.49079 20 11 2 0 0 0 0.21572 1 32474 32474 2.2828 0 1 2550300 65843 5010 43782 44779 76893 76893 -0.027248668284300948 TPYTGPSIAL 10 Unmodified _TPYTGPSIAL_ 0 0 0 ENST00000334370.8_1_19:42830159-42830195:+|nuORF ENST00000334370.8_1_19:42830159-42830195:+|nuORF ENST00000334370.8_1_19:42830159-42830195:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.27392578125 2 510.274032 1018.53351 0.21108 0.00010771 0.60939 0.00031096 0.82047 0.00041867 510.2742205083307 64.885 0.27928 64.4 64.253 64.532 -0.48482 23 12 2 0 0 0 0.24625 1 35394 35394 30.637 2.1497 1 1828100 65844 11883 43783 44780 76894 76894 0.02498634349092299 TPYTGPSIAL 10 Unmodified _TPYTGPSIAL_ 0 0 0 ENST00000334370.8_1_19:42830159-42830195:+|nuORF ENST00000334370.8_1_19:42830159-42830195:+|nuORF ENST00000334370.8_1_19:42830159-42830195:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.274032 1018.53351 0.29933 0.00015274 -0.091046 -4.6459E-05 0.20828 0.00010628 510.27419572487065 64.14 0.4992 64.14 63.974 64.473 0 -0.12983 -0.00054712 NaN 30.637 30 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1106800 65845 11883 43783 44780 0.02498634349092299 TQAGAPHHLTF 11 Unmodified _TQAGAPHHLTF_ 0 0 0 ENST00000403150.5_1_7:1580646-1582276:+|nuORF ENST00000403150.5_1_7:1580646-1582276:+|nuORF ENST00000403150.5_1_7:1580646-1582276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2992553710938 2 590.298904 1178.58326 0.89638 0.00052913 1.6089 0.00094974 2.5053 0.0014789 590.3009182089211 70.651 0.48083 64.475 64.224 64.705 -6.1757 67 25 4 0 0 0 0.50515 1 46116 46116 16.149 3.6176 1 83678000 65846 12902 43784 44781 76895 76895 0.0011076207772475755 TQALVAFS 8 Unmodified _TQALVAFS_ 0 0 0 nc|ENSG00000133067|Q9HBX8-1|LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6;ENST00000487787.5_1_1:202275897-202288332:+|nuORF nc|ENSG00000133067|Q9HBX8-1|LGR6 nc|ENSG00000133067|Q9HBX8-1|LGR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7299194335938 2 418.729261 835.443968 -0.40612 -0.00017006 1.3 0.00054436 0.89392 0.00037431 418.72985930287297 31.782 0.41743 31.782 31.523 31.94 0 31 20 2 0 0 0 0.58902 1 16555 16555 26.884 0 1 1691900 65847 4485 43785 44782 76896 76896 0.01966424460374583 TQARGRKG 8 Unmodified _TQARGRKG_ 0 0 0 REV__nc|ENSG00000153827|Q14669-2|TRIP12 REV__nc|ENSG00000153827|Q14669-2|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2538452148438 2 437.2543 872.494047 0.23262 0.00010171 0.90767 0.00039688 1.1403 0.00049859 437.2544357684183 78.088 0.27921 78.088 77.965 78.244 0 17 11 2 0 0 0 0.81107 1 43387 43387 0 0 1 535700 + 65848 21189 43786 44783 76897 76897 0.0526997190891052 TQARLRLL 8 Unmodified _TQARLRLL_ 0 0 0 REV__ENST00000514753.1_1_5:68485479-68492964:+|nuORF REV__ENST00000514753.1_1_5:68485479-68492964:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.8115539550781 2 485.811451 969.608348 0.84704 0.0004115 0.2762 0.00013418 1.1232 0.00054568 485.81172054273856 31.159 0.13957 27.464 27.384 27.524 -3.6958 8 6 2 0 0 0 0.44629 1 17643 17643 39.957 0 1 22665000 + 65849 21147 43787 44784 76898 76898 0.12232861670997863 TQARRRRRKF 10 Unmodified _TQARRRRRKF_ 0 0 0 ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.9193115234375 2 687.91871 1373.82287 1.5412 0.0010602 1.4497 0.0009973 2.991 0.0020575 688.42124156818 105.64 0.33593 99.469 99.359 99.695 -6.1757 50 28 2 0 0 0 0.71276 1 70861 70861 1.4819 0.15237 1 11322000 65850 11837 43788 44785 76899 76899 0.1509080153944069 TQARRRRRKFP 11 Unmodified _TQARRRRRKFP_ 0 0 0 ENST00000475854.1_1_X:100914419-100914797:-|nuORF;ENST00000328766.9_1_X:100913503-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF ENST00000475854.1_1_X:100914419-100914797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.6347351074219 3 491.299153 1470.87563 -0.30315 -0.00014894 -0.020239 -9.9433E-06 -0.32339 -0.00015888 491.2990508976873 101.41 0.16191 101.37 101.27 101.44 -0.04216 22 5 6 0 0 0 0.74442 1 56329 56329 0.08335 0 1 174850000 65851 11837 43789 44786 76900 76900 0.15902759602249716 TQCWYCKDK 9 Unmodified _TQCWYCKDK_ 0 0 0 REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF REV__ENST00000370251.3_2_X:152610995-152612303:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.549072265625 3 392.172177 1173.4947 1.1781 0.00046201 -0.92253 -0.00036179 0.25556 0.00010022 392.17203053070614 46.823 0.22258 46.79 46.675 46.898 -0.033421 23 10 4 0 0 0 0.21885 1 25174 25174 0.96228 0 1 2451700 + 65852 26056 43790 44787 76901 76901 -0.08510737548590441 TQDVFLSV 8 Unmodified _TQDVFLSV_ 0 0 0 REV__ENST00000609359.1_1_4:140335098-140374868:-|nuORF REV__ENST00000609359.1_1_4:140335098-140374868:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4807739257812 1 908.472374 907.465098 0.17483 0.00015883 1.0774 0.00097876 1.2522 0.0011376 908.4732960399759 61.265 0.45802 61.265 60.975 61.433 0 48 19 3 0 0 0 0.81007 1 34094 34094 0.6015 0 1 4118700 + 65853 29330 43791 44788 76902 76902 0.007663897692509636 TQEELDTLF 9 Unmodified _TQEELDTLF_ 0 0 0 nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A;nc|ENSG00000087995|Q96IZ6-2|METTL2A nc|ENSG00000165055|Q6P1Q9-2|METTL2B nc|ENSG00000165055|Q6P1Q9-2|METTL2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.76611328125 2 548.263862 1094.51317 0.06435 3.5281E-05 -0.33331 -0.00018274 -0.26897 -0.00014746 548.2633033910541 44.305 0.20416 44.305 44.171 44.375 0 15 10 2 0 0 0 0.098164 1 24105 24105 43.858 3.901 1 13706000 65854 1476 43792 44789 76903 76903 -0.030305811013704442 TQEEYGEFY 9 Unmodified _TQEEYGEFY_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P ENSG00000096384|ENST00000371646|HSP90AB1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.7906494140625 2 583.237844 1164.46113 1.345 0.00078445 1.6515 0.00096319 2.9964 0.0017476 583.2385710141496 64.502 0.34048 58.326 58.15 58.49 -6.1757 27 18 2 0 0 0 0.20727 1 41706 41706 4.3292 4.3292 1 10627000 65855 1671 43793 44790 76904 76904 -0.11451744515125029 TQEPIFPPEL 10 Unmodified _TQEPIFPPEL_ 0 0 0 ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH ENSG00000158125|ENST00000379416|XDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.80224609375 2 585.805697 1169.59684 -0.64576 -0.00037829 -1.6323 -0.00095623 -2.2781 -0.0013345 585.8044955934013 48.659 0.24967 48.659 48.511 48.761 0 20 11 2 0 0 0 0.60623 1 26707 26707 10.824 0.75 1 2062300 65856 6567 43794 44791 76905 76905 0.01882575066338177 TQFEEPLLY 9 Unmodified _TQFEEPLLY_ 0 0 0 REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF REV__ENST00000543897.5_2_12:122962498-122964774:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2857055664062 2 570.284597 1138.55464 0.84054 0.00047935 -0.14294 -8.1514E-05 0.6976 0.00039783 570.2846325330627 80.785 0.7 74.61 74.296 74.996 -6.1757 81 38 3 0 0 0 0.1773 1 53197 53197 25.399 2.2509 1 69023000 + 65857 28635 43795 44792 76906 76906 -0.009094003420386798 TQFHAWWHI 9 Unmodified _TQFHAWWHI_ 0 0 0 nc|ENSG00000078124|Q9NUN7-2|ACER3;ENSG00000078124|ENST00000532485|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.2991333007812 2 613.298707 1224.58286 0.72344 0.00044369 -0.82578 -0.00050645 -0.10234 -6.2763E-05 613.2981385694737 64.474 0.25944 63.989 63.821 64.081 -0.48513 21 11 3 0 0 0 0.51218 1 35169 35169 6.7232 0.51738 1 1044500 65858 1237 43796 44793 76907 76907 -0.020446128514549855 TQFQALTTAP 10 Unmodified _TQFQALTTAP_ 0 0 0 REV__ENSG00000135083|ENST00000257536|CCNJL REV__ENSG00000135083|ENST00000257536|CCNJL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2822875976562 2 539.282389 1076.55022 NaN NaN NaN NaN NaN NaN NaN 96.342 1 96.342 95.842 96.842 0 0 0 0 1.0061 1 53241 53241 0 0 1 + 65859 20037 43797 44794 76908 76908 0.015011352350029483 TQFRFRYNHFK 11 Unmodified _TQFRFRYNHFK_ 0 0 0 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 ENSG00000151690|ENST00000392328|MFSD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2679443359375 3 515.268748 1542.78442 0.2889 0.00014886 -0.63796 -0.00032872 -0.34906 -0.00017986 515.6029150247716 76.866 0.33408 76.916 76.722 77.057 0.050102 33 13 3 0 0 0 0.73451 1 42403 42403 1.0136 0.55906 1 3984700 65860 6137 43798 44795 76909 76909 0.03473451114246018 TQFSFRMRQ 9 Unmodified _TQFSFRMRQ_ 0 0 0 ENST00000460087.1_1_22:50755275-50757393:-|nuORF;ENST00000471942.6_1_22:50754827-50757300:-|nuORF;ENST00000495607.5_1_22:50754706-50765405:-|nuORF;ENSG00000205593|ENST00000413817|DENND6B ENST00000460087.1_1_22:50755275-50757393:-|nuORF ENST00000460087.1_1_22:50755275-50757393:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8016967773438 2 600.800757 1199.58696 0.22178 0.00013325 2.6768 0.0016082 2.8986 0.0017415 600.8023346675243 78.829 0.55193 78.343 78.111 78.663 -0.48596 75 22 4 0 0 0 0.32871 1 43120 43120 15.847 0.5987 1 16905000 65861 13635 43799 44796 76910 76910 -0.004848914200238141 TQFWFILVN 9 Unmodified _TQFWFILVN_ 0 0 0 REV__ENST00000470043.1_1_10:103792731-103793132:-|nuORF REV__ENST00000470043.1_1_10:103792731-103793132:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8782958984375 3 389.878087 1166.61243 -0.49706 -0.00019379 -0.24377 -9.504E-05 -0.74083 -0.00028883 389.8780249787863 25.609 0.12539 25.609 25.528 25.654 0 9 5 2 0 0 0 0.55775 1 13149 13149 2.2828 0.3764 1 775540 + 65862 27472 43800 44797 76911 76911 0.035789063740367055 TQFWFILVN 9 Unmodified _TQFWFILVN_ 0 0 0 REV__ENST00000470043.1_1_10:103792731-103793132:-|nuORF REV__ENST00000470043.1_1_10:103792731-103793132:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.878087 1166.61243 -0.49706 -0.00019379 -0.24377 -9.504E-05 -0.74083 -0.00028883 389.8780249787863 25.609 0.12539 25.609 25.528 25.654 0 0 0 NaN 2.2828 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 775540 + 65863 27472 43800 44797 0.035789063740367055 TQFYKEKSF 9 Unmodified _TQFYKEKSF_ 0 0 0 REV__ENSG00000184619|ENST00000396267|KRBA2 REV__ENSG00000184619|ENST00000396267|KRBA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2962036132812 2 589.298039 1176.58152 NaN NaN NaN NaN NaN NaN NaN 77.787 1 77.839 77.339 78.339 0.052452 0 0 0 0.26667 1 42941 42941 26.884 0 1 + 65864 23431 43801 44798 76912 76912 0.00029708269130424014 TQGLLAVGEA 10 Unmodified _TQGLLAVGEA_ 0 0 0 ENSG00000215912|ENST00000401095|TTC34;nc|ENSG00000215912|A8MYJ7|TTC34 ENSG00000215912|ENST00000401095|TTC34 ENSG00000215912|ENST00000401095|TTC34 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.28369140625 2 479.763832 957.513111 0.81595 0.00039146 0.43413 0.00020828 1.2501 0.00059974 479.76400237598835 75.613 0.2673 75.136 74.945 75.212 -0.47713 20 14 2 0 0 0 0.23991 1 41310 41310 1.4819 0 1 1007700 65865 10540 43802 44799 76913 76913 0.032654636892857525 TQGPQQVQGS 10 Unmodified _TQGPQQVQGS_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7376708984375 2 515.25162 1028.48869 -0.5291 -0.00027262 -3.7367 -0.0019253 -4.2658 -0.002198 515.2498219113529 30.124 0.26906 30.124 29.974 30.243 0 30 12 3 0 0 0 0.21618 1 15592 15592 26.268 10.421 1 9131900 + 65866 19112 43803 44800 76914 76914 -0.024417964642225343 TQHWHLTQQ 9 Unmodified _TQHWHLTQQ_ 0 0 0 ENST00000493076.5_1_22:35819109-35819445:+|nuORF ENST00000493076.5_1_22:35819109-35819445:+|nuORF ENST00000493076.5_1_22:35819109-35819445:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7866821289062 2 589.788704 1177.56285 -1.1781 -0.00069482 -1.3801 -0.000814 -2.5582 -0.0015088 589.7878716287714 32.592 0.27081 32.592 32.462 32.733 0 37 15 3 0 0 0 0.05483 1 16999 16999 43.772 10.987 1 21670000 65867 14306 43804 44801 76915 76915 -0.018824085820597247 TQIEPFCLE 9 Unmodified _TQIEPFCLE_ 0 0 0 ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2 ENSG00000088325|ENST00000300403|TPX2 ENSG00000088325|ENST00000300403|TPX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7827758789062 2 540.257525 1078.5005 0.38685 0.000209 3.3955 0.0018344 3.7823 0.0020434 540.7602889024256 71.873 0.38002 71.397 71.192 71.572 -0.47609 30 14 3 0 0 0 0.1325 1 39410 39410 25.399 0 1 545770 65868 1485 43805 44802 76916 76916 -0.035613157652505834 TQIPMSEKRNS 11 Unmodified _TQIPMSEKRNS_ 0 0 0 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6;nc|ENSG00000169435|Q6ZTQ3-3|RASSF6;ENSG00000169435|ENST00000307439|RASSF6;nc|ENSG00000169435|Q6ZTQ3|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 nc|ENSG00000169435|Q6ZTQ3-4|RASSF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.887939453125 3 430.887205 1289.63978 NaN NaN NaN NaN NaN NaN NaN 38.163 1 38.163 37.663 38.663 0 0 0 0 0.73356 1 20364 20364 8.7518 4.6352 1 65869 7874 43806 44803 76917 76917 0.006550218521169882 TQIYRDDTVL 10 Unmodified _TQIYRDDTVL_ 0 0 0 ENST00000382496.9_1_5:9041100-9041304:-|nuORF ENST00000382496.9_1_5:9041100-9041304:-|nuORF ENST00000382496.9_1_5:9041100-9041304:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 612.3153686523438 2 612.31696 1222.61937 NaN NaN NaN NaN NaN NaN NaN 60.459 1 54.311 53.811 54.811 -6.1478 0 0 0 0.49971 1 38908 38908 26.268 5.8145 1 65870 12631 43807 44804 76918 76918 0.016961744639502285 TQKISHFSI 9 Unmodified _TQKISHFSI_ 0 0 0 REV__nc|ENSG00000106113|Q13324-3|CRHR2 REV__nc|ENSG00000106113|Q13324-3|CRHR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1960754394531 3 354.197708 1059.57129 -0.58411 -0.00020689 -2.1069 -0.00074627 -2.691 -0.00095316 354.1969337262721 14.298 0.036835 14.298 14.285 14.322 0 19 11 2 0 0 0 0.56345 1 6787 6787 2.086 0 1 351630 + 65871 18491 43808 44805 76919 76919 0.04389145334562272 TQKPQKNIAVC 11 Unmodified _TQKPQKNIAVC_ 0 0 0 ENST00000428910.5_1_2:27535970-27539979:-|nuORF ENST00000428910.5_1_2:27535970-27539979:-|nuORF ENST00000428910.5_1_2:27535970-27539979:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5606689453125 3 410.56054 1228.65979 0.31014 0.00012733 -0.092468 -3.7964E-05 0.21767 8.9366E-05 410.56051968467636 84.785 0.66497 78.609 78.172 78.837 -6.1757 62 38 3 0 0 0 0.65846 1 55628 55628 4.1166 0 1 54133000 65872 13215 43809 44806 76920 76920 0.0546081758272976 TQLERTSGAL 10 Unmodified _TQLERTSGAL_ 0 0 0 REV__ENSG00000130159|ENST00000270517|ECSIT REV__ENSG00000130159|ENST00000270517|ECSIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2896728515625 2 538.290745 1074.56694 1.0076 0.0005424 -2.9113 -0.0015672 -1.9037 -0.0010247 538.2891685812169 20.022 0.21375 17.366 17.257 17.471 -2.6564 15 11 2 0 0 0 0.52659 1 10628 10628 4.897 0 1 1571400 + 65873 19699 43810 44807 76921 76921 0.0326363612100522 TQLINQFY 8 Unmodified _TQLINQFY_ 0 0 0 REV__nc|ENSG00000171931|Q5XX13-4|FBXW10;REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.766845703125 2 513.766374 1025.5182 0.31274 0.00016068 -2.081 -0.0010691 -1.7683 -0.00090847 513.7662818926659 63.683 0.40365 63.197 62.969 63.373 -0.48617 49 18 5 0 0 0 0.74163 1 34797 34797 13.508 1.8676 1 8776000 + 65874 24447;22611 43811 44808 76922 76922 0.0064576755189591495 TQLQKKCWL 9 Unmodified _TQLQKKCWL_ 0 0 0 ENST00000508571.6_1_5:109668587-109961153:-|nuORF;ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232 ENST00000508571.6_1_5:109668587-109961153:-|nuORF ENST00000508571.6_1_5:109668587-109961153:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.89306640625 3 383.214593 1146.62195 0.94468 0.00036202 0.34119 0.00013075 1.2859 0.00049276 383.2146818358008 49.704 0.13712 49.655 49.626 49.763 -0.048824 10 6 2 0 0 0 0.19891 1 26901 26901 7.609 0.31972 1 3011800 65875 9526 43812 44809 76923 76923 0.05450351387912633 TQNDNYLL 8 Unmodified _TQNDNYLL_ 0 0 0 REV__ENST00000381359.5_2_15:44086262-44086427:+|nuORF REV__ENST00000381359.5_2_15:44086262-44086427:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7364807128906 2 490.737814 979.461075 0.87185 0.00042785 1.1729 0.0005756 2.0448 0.0010035 490.7380951322381 74.156 0.47836 73.681 73.362 73.84 -0.47588 35 21 2 0 0 0 0.78849 1 40606 40606 9.3474 0.75416 1 1122900 + 65876 26333 43813 44810 76924 76924 -0.02947699724472841 TQNIDELHR 9 Unmodified _TQNIDELHR_ 0 0 0 nc|ENSG00000124523|Q9NXA8-4|SIRT5;nc|ENSG00000124523|Q9NXA8-3|SIRT5;nc|ENSG00000124523|Q9NXA8-2|SIRT5;ENSG00000124523|ENST00000606117|SIRT5 nc|ENSG00000124523|Q9NXA8-4|SIRT5 nc|ENSG00000124523|Q9NXA8-4|SIRT5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 562.8150024414062 2 563.285994 1124.55744 0.9231 0.00051997 0.24108 0.0001358 1.1642 0.00065577 563.788147382966 45.87 0.52084 40.915 40.669 41.19 -4.9549 84 34 4 0 0 0 0.14225 1 28186 28186 5.2969 3.815 1 29867000 65877 3794 43814 44811 76925 76925 0.00013867835446035315 TQNPNYYNL 9 Unmodified _TQNPNYYNL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7625732421875 2 563.76182 1125.50909 0.21366 0.00012045 0.83362 0.00046996 1.0473 0.00059042 563.7620292534752 45.532 0.23474 45.532 45.429 45.664 0 17 12 2 0 0 0 0.039985 2 24808 24800;24808 49.933 24.534 1 3514900 65878 5575 43815 44812 76926;76927 76927 -0.04864625804430034 TQPCVQDKF 9 Unmodified _TQPCVQDKF_ 0 0 0 REV__ENST00000532681.5_1_11:45940052-45940271:-|nuORF REV__ENST00000532681.5_1_11:45940052-45940271:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7930908203125 2 533.255317 1064.49608 -0.19704 -0.00010507 -0.99784 -0.0005321 -1.1949 -0.00063717 533.2551484449941 33.386 0.15114 33.386 33.264 33.415 0 14 7 3 0 0 0 0.20139 1 17523 17523 6.7232 1.9672 1 1582500 + 65879 28469 43816 44813 76928 76928 -0.03358780188182209 TQPERLSY 8 Unmodified _TQPERLSY_ 0 0 0 REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF REV__ENST00000574867.5_1_17:5292093-5322970:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2532958984375 2 497.253631 992.49271 -0.49999 -0.00024862 0.43705 0.00021732 -0.062944 -3.1299E-05 497.2538185465963 30.079 0.31289 30.079 29.909 30.222 0 36 14 4 0 0 0 0.72664 1 15682 15682 14.838 0 1 12525000 + 65880 18615 43817 44814 76929 76929 -0.003837069705355134 TQPGTGWVQF 10 Unmodified _TQPGTGWVQF_ 0 0 0 nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7757568359375 2 560.774731 1119.53491 0.10505 5.8907E-05 1.8047 0.001012 1.9098 0.0010709 560.7754302877644 69.552 0.3446 69.073 68.9 69.245 -0.47903 39 14 4 0 0 0 0.50362 1 38055 38055 16.149 4.5088 1 2851600 65881 6506 43818 44815 76930 76930 -0.020077315621620073 TQPGTGWVQF 10 Unmodified _TQPGTGWVQF_ 0 0 0 nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7750244140625 2 560.774731 1119.53491 0.99592 0.00055849 -0.067964 -3.8112E-05 0.92796 0.00052037 560.7748204087235 75.82 0.6317 69.645 69.319 69.951 -6.1757 78 33 3 0 0 0 0.34249 1 49594 49594 24.991 7.8781 1 33742000 65882 6506 43818 44815 76931 76931 -0.020077315621620073 TQPGTGWVQF 10 Unmodified _TQPGTGWVQF_ 0 0 0 nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 nc|ENSG00000157191|Q9NVZ3-4|NECAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.774731 1119.53491 0.97058 0.00054428 0.26007 0.00014584 1.2307 0.00069012 560.7748038013017 69.045 0.25697 69.076 68.95 69.207 0.030914 0.0015313 -0.00092602 NaN 16.149 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2262600 65883 6506 43818 44815 -0.020077315621620073 TQPHKYWLL 9 Unmodified _TQPHKYWLL_ 0 0 0 ENST00000521580.2_1_1:35320720-35321281:-|nuORF ENST00000521580.2_1_1:35320720-35321281:-|nuORF ENST00000521580.2_1_1:35320720-35321281:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8850708007812 3 395.885353 1184.63423 -0.17035 -6.7438E-05 1.0948 0.0004334 0.92442 0.00036596 396.2201014523485 53.351 0.37969 53.287 53.044 53.423 -0.063423 34 18 3 0 0 0 0.55886 1 28903 28903 3.8763 0.88109 1 1680000 65884 14746 43819 44816 76932 76932 0.04929711122599656 TQPMLERKC 9 Unmodified _TQPMLERKC_ 0 0 0 nc|ENSG00000273540|Q96MI9|AGBL1;ENSG00000273540|ENST00000614907|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 nc|ENSG00000273540|Q96MI9|AGBL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.3040771484375 2 553.278269 1104.54198 0.72872 0.00040318 -0.3033 -0.00016781 0.42542 0.00023538 553.2784826748424 28.429 0.22955 28.367 28.273 28.502 -0.062159 15 8 2 0 0 0 0.21052 1 14679 14679 6.7232 0 1 1630400 65885 10894 43820 44817 76933 76933 -0.006104582775833478 TQPRGCHALL 10 Unmodified _TQPRGCHALL_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.8622131347656 3 365.862442 1094.5655 -0.57164 -0.00020914 0.19597 7.1697E-05 -0.37567 -0.00013744 365.8624948182019 18.228 0.12742 18.242 18.177 18.304 0.013865 42 25 2 0 0 0 0.68844 1 9112 9112 4.1895 1.1943 1 2214200 + 65886 24515 43821 44818 76934 76934 0.02199723551234456 TQQDRRMEMEF 11 Unmodified _TQQDRRMEMEF_ 0 0 0 ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L ENSG00000278685|ENST00000615129|IQCA1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.8863525390625 3 490.886987 1469.63913 NaN NaN NaN NaN NaN NaN NaN 32.073 1 31.944 31.444 32.444 -0.12915 0 0 0 0.9428 1 16691 16691 0.50596 0 1 65887 10937 43822 44819 76935 76935 -0.07690140859290295 TQQRLWRPWRY 11 Unmodified _TQQRLWRPWRY_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.6170043945312 3 530.619781 1588.83751 NaN NaN NaN NaN NaN NaN NaN 30.681 1 30.578 30.078 31.078 -0.10269 0 0 0 0.9428 1 15928 15928 0.50596 0 1 + 65888 18245 43823 44820 76936 76936 0.06664828896919062 TQQTVRNLAL 10 Unmodified _TQQTVRNLAL_ 0 0 0 ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8881225585938 3 381.887533 1142.64077 0.62998 0.00024058 -0.048921 -1.8682E-05 0.58106 0.0002219 381.88747574025854 24.778 0.36763 21.895 21.668 22.036 -2.8831 35 21 2 0 0 0 0.6067 1 13542 13542 6.6235 1.2207 1 6765600 65889 4482 43824 44821 76937 76937 0.07515604283344146 TQQTVRNLAL 10 Unmodified _TQQTVRNLAL_ 0 0 0 ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH ENSG00000133055|ENST00000255416|MYBPH MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 381.887533 1142.64077 0.62998 0.00024058 -0.048921 -1.8682E-05 0.58106 0.0002219 381.88747574025854 24.778 0.36763 21.895 21.668 22.036 -2.8831 -0.0078113 -9.5088E-05 NaN 6.6235 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 6765600 65890 4482 43824 44821 0.07515604283344146 TQRFHYWI 8 Unmodified _TQRFHYWI_ 0 0 0 L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|52|1|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|52|1|sense L1PA6_dup1514|chr4:71615795-71621942:+|1.1828127694248811|0.0463463124397368|4.67|173.0|52|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7938842773438 2 575.793258 1149.57196 0.37276 0.00021463 -0.42069 -0.00024223 -0.047934 -2.76E-05 575.7928911515463 88.165 0.21085 88.165 88.053 88.264 0 15 9 2 0 0 0 0.80722 1 48806 48806 2.3027 0.24298 1 317820 65891 15965 43825 44822 76938 76938 0.00315984774260869 TQRGDRWT 8 Unmodified _TQRGDRWT_ 0 0 0 REV__ENST00000320580.8_1_11:66011432-66012044:+|nuORF REV__ENST00000320580.8_1_11:66011432-66012044:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2536926269531 2 510.254497 1018.49444 0.36819 0.00018787 -1.2771 -0.00065164 -0.9089 -0.00046377 510.25373171236276 19.654 0.082371 19.661 19.61 19.692 0.0078487 6 3 2 0 0 0 0.80383 1 10010 10010 4.3292 0.73274 1 413030 + 65892 25501 43826 44823 76939 76939 -0.01406653161916438 TQRSLHFG 8 Unmodified _TQRSLHFG_ 0 0 0 REV__nc|ENSG00000131269|O75027-3|ABCB7 REV__nc|ENSG00000131269|O75027-3|ABCB7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2488098144531 2 473.248683 944.482814 NaN NaN NaN NaN NaN NaN NaN 21.811 1 21.824 21.324 22.324 0.013796 0 0 0 0.97444 1 11187 11187 0.6015 0 1 + 65893 19781 43827 44824 76940 76940 0.008351498147703751 TQRTIVHYY 9 Unmodified _TQRTIVHYY_ 0 0 0 REV__ENSG00000181555|ENST00000409792|SETD2 REV__ENSG00000181555|ENST00000409792|SETD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.208984375 3 394.208495 1179.60366 -0.068669 -2.707E-05 0.074583 2.9401E-05 0.0059132 2.331E-06 394.2085498357068 17.263 0.45142 17.268 17.055 17.507 0.0050564 71 32 3 0 0 0 0.59218 1 8647 8647 0.96228 0.18574 1 2056800 + 65894 23211 43828 44825 76941 76941 0.021039327375547145 TQRYGIYERCR 11 Unmodified _TQRYGIYERCR_ 0 0 0 nc|ENSG00000186908|Q8IUH5-2|ZDHHC17;ENST00000546778.5_1_12:77157996-77214864:+|nuORF nc|ENSG00000186908|Q8IUH5-2|ZDHHC17 nc|ENSG00000186908|Q8IUH5-2|ZDHHC17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 722.859375 2 722.859335 1443.70412 NaN NaN NaN NaN NaN NaN NaN 83.122 1 82.625 82.125 83.125 -0.49751 0 0 0 0.94307 1 45503 45503 0.30703 0 1 65895 15111 43829 44826 76942 76942 1.2217288940519211E-05 TQSERRQYEI 10 Unmodified _TQSERRQYEI_ 0 0 0 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.8304443359375 2 655.32839 1308.64223 0.43814 0.00028713 0.40692 0.00026667 0.84506 0.00055379 655.3290729410844 91.24 0.11674 90.745 90.663 90.78 -0.49458 5 4 2 0 0 0 0.24009 1 49885 49885 0.35063 0 1 207730 + 65896 29966 43830 44827 76943 76943 0.00025193581450366764 TQSIAVAL 8 Unmodified _TQSIAVAL_ 0 0 0 REV__ENSG00000181240|ENST00000321510|SLC25A41 REV__ENSG00000181240|ENST00000321510|SLC25A41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.4664306640625 1 802.466895 801.459619 0.010367 8.3196E-06 -0.30522 -0.00024493 -0.29485 -0.00023661 802.4669430373585 63.336 0.2748 63.336 63.146 63.421 0 18 11 2 0 0 0 0.40602 1 35272 35272 43.858 1.7637 1 1917200 + 65897 23197 43831 44828 76944 76944 0.050947109774256205 TQSNRSPVY 9 Unmodified _TQSNRSPVY_ 0 0 0 REV__ENST00000439412.5_1_2:61071228-61083991:-|nuORF REV__ENST00000439412.5_1_2:61071228-61083991:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2625732421875 2 526.261988 1050.50942 0.040105 2.1106E-05 -0.27833 -0.00014648 -0.23823 -0.00012537 526.2619608536418 23.654 0.52591 23.654 23.367 23.893 0 109 26 6 0 0 0 0.30202 1 12167 12167 17.113 2.5312 1 34684000 + 65898 27063 43832 44829 76945 76945 -0.01381206084556652 TQTELELEF 9 Unmodified _TQTELELEF_ 0 0 0 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 nc|ENSG00000157214|Q8NFT2-3|STEAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2672729492188 2 555.271687 1108.52882 0.71086 0.00039472 -4.4037 -0.0024452 -3.6928 -0.0020505 555.2677762796278 47.375 0.30562 47.375 47.231 47.537 0 29 13 3 0 0 0 0.16226 1 25907 25907 26.884 6.4691 1 2226200 65899 16298 43833 44830 76946 76946 -0.021102945843495036 TQTHYCFF 8 Unmodified _TQTHYCFF_ 0 0 0 ENST00000520998.1_1_8:99056854-99057070:-|nuORF ENST00000520998.1_1_8:99056854-99057070:-|nuORF ENST00000520998.1_1_8:99056854-99057070:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7240600585938 2 523.723652 1045.43275 NaN NaN NaN NaN NaN NaN NaN 68.592 1 68.592 68.092 69.092 0 0 0 0 0.97444 1 38232 38232 2.8892 0 1 65900 14738 43834 44831 76947 76947 -0.08814720905411377 TQTPAHTP 8 Unmodified _TQTPAHTP_ 0 0 0 REV__ENST00000306145.9_1_8:145690906-145691050:-|nuORF REV__ENST00000306145.9_1_8:145690906-145691050:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.7150268554688 2 426.714142 851.413731 0.69345 0.0002959 -0.46628 -0.00019897 0.22717 9.6938E-05 426.7140408708993 36.31 0.33577 32.117 31.914 32.25 -4.1928 28 19 2 0 0 0 0.36356 2 21146 21146;21275 48.346 6.2513 1 17383000 + 65901 25373 43835 44832 76948;76949 76948 -0.01791934204811696 TQVGKLHPF 9 Unmodified _TQVGKLHPF_ 0 0 0 REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2227172851562 2 513.790184 1025.56581 0.22441 0.0001153 1.8848 0.00096841 2.1093 0.0010837 513.7910958257248 39.766 0.21211 39.766 39.661 39.873 0 18 10 2 0 0 0 0.20139 1 21372 21372 10.824 5.5933 1 2595700 + 65902 28106 43836 44833 76950 76950 0.05405466542720205 TQVRPYECSQ 10 Unmodified _TQVRPYECSQ_ 0 0 0 nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 nc|ENSG00000131849|P52740-2|ZNF132 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.1887817382812 3 404.188884 1209.54482 0.49156 0.00019868 -0.74325 -0.00030041 -0.25169 -0.00010173 404.188485295852 26.388 0.31906 23.437 23.319 23.638 -2.9511 35 16 3 0 0 0 0.67459 1 14648 14648 3.0723 0 1 12306000 65903 4356 43837 44834 76951 76951 -0.05156911619087623 TQYPLNALKVY 11 Unmodified _TQYPLNALKVY_ 0 0 0 REV__ENSG00000258223|ENST00000547058|PRSS58 REV__ENSG00000258223|ENST00000547058|PRSS58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3602294921875 2 655.36117 1308.70779 0.1736 0.00011377 0.0083962 5.5025E-06 0.18199 0.00011927 655.360849979446 57.941 0.423 51.913 51.698 52.121 -6.0275 36 23 2 0 0 0 0.62603 1 37026 37026 16.566 0 1 45022000 + 65904 24568 43838 44835 76952 76952 0.06578214774413027 TRACRLSCL 9 Unmodified _TRACRLSCL_ 0 0 0 REV__ENST00000541729.1_1_1:159772181-159778302:+|nuORF REV__ENST00000541729.1_1_1:159772181-159778302:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2678833007812 2 511.765329 1021.5161 0.29918 0.00015311 -0.099543 -5.0942E-05 0.19963 0.00010217 511.7647653560641 57.561 0.51751 57.071 56.729 57.247 -0.48974 66 24 4 0 0 0 0.51218 1 31136 31136 6.7232 0 1 13807000 + 65905 28604 43839 44836 76953 76953 0.006206922707974627 TRAPLRRHGCL 11 Unmodified _TRAPLRRHGCL_ 0 0 0 REV__nc|ENSG00000089639|Q9P107-2|GMIP REV__nc|ENSG00000089639|Q9P107-2|GMIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2445373535156 3 427.243657 1278.70914 NaN NaN NaN NaN NaN NaN NaN 22.921 1 22.921 22.421 23.421 0 0 0 0 0.94165 1 11671 11671 1.3296 0.55311 1 + 65906 17844 43840 44837 76954 76954 0.08093570382197868 TRAVRTRLF 9 Unmodified _TRAVRTRLF_ 0 0 0 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 ENSG00000180758|ENST00000377411|GPR157 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.8143310546875 2 560.340907 1118.66726 1.1332 0.00063499 -1.1102 -0.00062208 0.02304 1.2911E-05 560.3401273493758 100.5 0.22921 94.323 94.202 94.431 -6.1757 40 14 4 0 0 0 0.21367 1 67312 67312 2.0598 0 1 266060000 65907 8919 43841 44838 76955 76955 0.11267337965296065 TRCEDKRDN 9 Unmodified _TRCEDKRDN_ 0 0 0 REV__ENSG00000215182|ENST00000621226|MUC5AC REV__ENSG00000215182|ENST00000621226|MUC5AC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1737365722656 3 379.508616 1135.50402 0.20282 7.6974E-05 1.4326 0.00054367 1.6354 0.00062064 379.5092460443589 68.073 0.080902 68.073 68.043 68.124 0 5 3 2 0 0 0 0.21834 1 37967 37967 0.96228 0 1 365640 + 65908 24335 43842 44839 76956 76956 -0.05831252938696707 TRCEPTFDF 9 Unmodified _TRCEPTFDF_ 0 0 0 REV__ENSG00000189132|ENST00000329357|FAM47B REV__ENSG00000189132|ENST00000329357|FAM47B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.319580078125 2 558.244949 1114.47534 1.448 0.00080835 -1.7809 -0.00099417 -0.33286 -0.00018582 558.2440084107344 58.338 0.47325 52.263 52.145 52.618 -6.0745 41 25 2 0 0 0 0.20139 1 37383 37383 6.7232 0 1 12338000 + 65909 23764 43843 44840 76957 76957 -0.07731370567853446 TRCFVFLKEE 10 Unmodified _TRCFVFLKEE_ 0 0 0 ENST00000396398.7_1_22:42466442-42466553:-|nuORF ENST00000396398.7_1_22:42466442-42466553:-|nuORF ENST00000396398.7_1_22:42466442-42466553:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.552734375 3 424.553274 1270.63799 -0.19484 -8.2719E-05 -1.3363 -0.00056734 -1.5312 -0.00065006 424.5529027050117 31.406 0.15364 31.437 31.346 31.499 0.030106 9 6 2 0 0 0 0.71535 1 16467 16467 0.50596 0 1 1779300 65910 12792 43844 44841 76958 76958 0.01350012834154768 TRCMMQAVYF 10 Unmodified _TRCMMQAVYF_ 0 0 0 nc|ENSG00000083520|Q9Y2L1-2|DIS3;ENSG00000083520|ENST00000377767|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 nc|ENSG00000083520|Q9Y2L1-2|DIS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.1893920898438 3 417.189062 1248.54536 0.87127 0.00036348 0.10605 4.4244E-05 0.97732 0.00040773 417.1890187768439 44.38 0.75969 39.528 39.215 39.975 -4.852 227 58 5 0 0 0 0.62068 1 27035 27035 8.9762 3.5735 1 520950000 65911 1366 43845 44842 76959 76959 -0.06897531495246767 TREEHHFMV 9 Unmodified _TREEHHFMV_ 0 0 0 ENSG00000148734|ENST00000277942|NPFFR1 ENSG00000148734|ENST00000277942|NPFFR1 ENSG00000148734|ENST00000277942|NPFFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8540954589844 3 395.853835 1184.53968 1.0661 0.000422 0.61815 0.0002447 1.6842 0.0006667 395.85398710964324 70.925 0.2506 70.96 70.855 71.106 0.035515 21 11 3 0 0 0 0.58865 1 39068 39068 1.0715 0 1 3023000 65912 5960 43846 44843 76960 76960 -0.04521170691032239 TREIAKKIL 9 Unmodified _TREIAKKIL_ 0 0 0 ENST00000339950.4_1_1:62907947-62908869:+|nuORF ENST00000339950.4_1_1:62907947-62908869:+|nuORF ENST00000339950.4_1_1:62907947-62908869:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3492431640625 2 536.347866 1070.68118 -0.59551 -0.0003194 0.40671 0.00021814 -0.1888 -0.00010126 536.3483167209822 103.28 0.30922 103.24 103.12 103.43 -0.047928 28 12 3 0 0 0 0.6149 1 57457 57457 0.45834 0 1 1966900 65913 11955 43847 44844 76961 76961 0.1486657067375745 TREQFTVVW 9 Unmodified _TREQFTVVW_ 0 0 0 REV__ENST00000506857.5_1_5:61657124-61657353:+|nuORF REV__ENST00000506857.5_1_5:61657124-61657353:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.2053833007812 3 389.204862 1164.59276 1.3975 0.00054393 -0.038372 -1.4935E-05 1.3592 0.00052899 389.20490537344995 32.365 0.45649 28.509 28.319 28.776 -3.8562 43 25 2 0 0 0 0.19361 1 18387 18387 23.79 0 1 17773000 + 65914 28093 43848 44845 76962 76962 0.017045303632812647 TRERWKRRRRR 11 Unmodified _TRERWKRRRRR_ 0 0 0 ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF ENST00000326402.8_2_11:92930946-92931072:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.4955444335938 2 828.498721 1654.98289 NaN NaN NaN NaN NaN NaN NaN 69.314 1 69.345 68.845 69.845 0.030914 0 0 0 0.94165 1 38096 38096 1.3295 1.3295 1 65915 11819 43849 44846 76963 76963 0.18159729536455416 TREVLMKL 8 Unmodified _TREVLMKL_ 0 0 0 nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ENSG00000132932|ENST00000381655|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 nc|ENSG00000132932|Q9NTI2-3|ATP8A2 MSMS AL20221201_MKP_PDAC_01 4 495.2949523925781 2 495.294245 988.573937 NaN NaN NaN NaN NaN NaN NaN 104.04 1 97.868 97.368 98.368 -6.1757 0 0 0 0.97444 1 69704 69704 2.3027 0 1 65916 4466 43850 44847 76964 76964 0.07919277467874508 TRFQQEVWG 9 Unmodified _TRFQQEVWG_ 0 0 0 ENST00000495746.5_1_1:119575954-119683267:-|nuORF;ENST00000369426.9_1_1:119575536-119588262:-|nuORF ENST00000495746.5_1_1:119575954-119683267:-|nuORF ENST00000495746.5_1_1:119575954-119683267:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.19287109375 3 384.192845 1149.55671 0.9075 0.00034865 -0.62789 -0.00024123 0.27961 0.00010742 384.1925095788366 17.659 0.23705 15.072 14.971 15.208 -2.5866 84 34 3 0 0 0 0.25681 1 9244 9244 13.615 2.8154 1 7465200 65917 14358 43851 44848 76965 76965 -0.012089268135923703 TRFVKIAPAI 10 Unmodified _TRFVKIAPAI_ 0 0 0 ENSG00000223611|ENST00000486479|SUPT20HL2 ENSG00000223611|ENST00000486479|SUPT20HL2 ENSG00000223611|ENST00000486479|SUPT20HL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.3519897460938 2 558.350409 1114.68626 1.7177 0.00095906 -0.27502 -0.00015356 1.4426 0.0008055 558.3499818209771 106.74 0.87495 100.57 99.891 100.77 -6.1757 250 150 3 0 0 0 0.72196 2 71070 71070;71497 0.45834 0 1 7565500 65918 10573 43852 44849 76966;76967 76966 0.1335087453635424 TRFWRRRLRRP 11 Unmodified _TRFWRRRLRRP_ 0 0 0 REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF REV__ENST00000574110.5_1_19:30433210-30433438:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.484619140625 2 800.482008 1598.94946 NaN NaN NaN NaN NaN NaN NaN 79.52 1 79.575 79.075 80.075 0.05497 0 0 0 0.9435 1 43941 43941 0 0 1 + 65919 29004 43853 44850 76968 76968 0.173947277645766 TRGAAAPG 8 Unmodified _TRGAAAPG_ 0 0 0 ENST00000264220.6_1_4:57273852-57301749:-|nuORF ENST00000264220.6_1_4:57273852-57301749:-|nuORF ENST00000264220.6_1_4:57273852-57301749:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.1890258789062 2 350.69047 699.366387 0.58186 0.00020405 -1.0593 -0.0003715 -0.47748 -0.00016745 350.69006288254076 72.46 0.30872 71.984 71.9 72.209 -0.47609 18 14 2 0 0 0 8.7369 1 39689 39689 2.3027 0 1 621760 65920 11308 43854 44851 76969 76969 0.0046783131484744445 TRGRTVKQL 9 Unmodified _TRGRTVKQL_ 0 0 0 REV__nc|ENSG00000164808|Q14159-2|SPIDR REV__nc|ENSG00000164808|Q14159-2|SPIDR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.8255615234375 2 529.825089 1057.63563 NaN NaN NaN NaN NaN NaN NaN 78.373 1 77.887 77.387 78.387 -0.48596 0 0 0 0.84737 1 42925 42925 1.8442 0 1 + 65921 21952 43855 44852 76970 76970 0.10911345211366097 TRHGGGFL 8 Unmodified _TRHGGGFL_ 0 0 0 REV__ENST00000367596.5_1_6:143382353-143382515:+|nuORF REV__ENST00000367596.5_1_6:143382353-143382515:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.7255249023438 2 422.724844 843.435135 0.69263 0.00029279 2.0511 0.00086706 2.7438 0.0011599 422.7253226835944 57.031 0.49939 56.965 56.641 57.14 -0.066338 42 24 3 0 0 0 0.80624 1 31019 31019 2.8892 0 1 8314000 + 65922 25993 43856 44853 76971 76971 0.007154956145768665 TRHSKTTSL 9 Unmodified _TRHSKTTSL_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7880249023438 2 515.78563 1029.55671 1.4908 0.00076893 1.8838 0.00097166 3.3746 0.0017406 515.7872488407443 47.681 0.67369 42.447 42.197 42.87 -5.2339 93 40 3 0 0 0 0.031062 1 29596 29596 54.774 0 1 78851000 + 65923 23576 43857 44854 76972 76972 0.04311073186431713 TRIKLKATK 9 Unmodified _TRIKLKATK_ 0 0 0 REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.855224609375 2 529.855858 1057.69716 NaN NaN NaN NaN NaN NaN NaN 103.6 1 103.56 103.06 104.06 -0.047928 0 0 0 0.85737 1 57537 57537 0.6015 0.076735 1 + 65924 28299 43858 44855 76973 76973 0.17062276910633045 TRIKLRRIYKI 11 Unmodified _TRIKLRRIYKI_ 0 0 0 ENST00000389622.6_1_3:97583283-97583379:+|nuORF ENST00000389622.6_1_3:97583283-97583379:+|nuORF ENST00000389622.6_1_3:97583283-97583379:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 487.3243408203125 3 487.324305 1458.95109 NaN NaN NaN NaN NaN NaN NaN 109.68 1 103.5 103 104 -6.1757 0 0 0 0.9435 1 73233 73233 0 0 1 65925 12647 43859 44856 76974 76974 0.23996924009975373 TRKAKKKK 8 Unmodified _TRKAKKKK_ 0 0 0 REV__nc|ENSG00000154144|Q3YBR2-2|TBRG1 REV__nc|ENSG00000154144|Q3YBR2-2|TBRG1 MSMS AL20221201_MKP_PDAC_01 4 494.3420715332031 2 494.342918 986.671283 NaN NaN NaN NaN NaN NaN NaN 103.6 1 97.422 96.922 97.922 -6.1757 0 0 0 0.97444 1 69450 69450 0 0 1 + 65926 29714 43860 44857 76975 76975 0.17741427459020542 TRKDHEHRED 10 Unmodified _TRKDHEHRED_ 0 0 0 ENST00000444067.2_1_1:78313713-78313869:+|nuORF ENST00000444067.2_1_1:78313713-78313869:+|nuORF ENST00000444067.2_1_1:78313713-78313869:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.5431823730469 3 441.544718 1321.61232 NaN NaN NaN NaN NaN NaN NaN 38.445 1 38.158 37.658 38.658 -0.28687 0 0 0 0.97302 1 20237 20237 1.7423 0.41263 1 65927 13434 43861 44858 76976 76976 -0.0356174536391336 TRKKKKLKKK 10 Unmodified _TRKKKKLKKK_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.4594116210938 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 17.801 1 17.806 17.306 18.306 0.0050564 0 0 0 1.0061 1 8996 8996 0 0 1 + 65928 29365 43862 44859 76977 76977 0.27710153952511973 TRKKKKLKKK 10 Unmodified _TRKKKKLKKK_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense MSMS AL20221201_MKP_PDAC_01 4 643.32470703125 2 643.461356 1284.90816 NaN NaN NaN NaN NaN NaN NaN 105.42 1 99.243 98.743 99.743 -6.1757 0 0 0 1.0061 1 70639 70639 0 0 1 + 65929 29365 43862 44859 76978 76978 0.27710153952511973 TRKKRLLE 8 Unmodified _TRKKRLLE_ 0 0 0 REV__ENSG00000137845|ENST00000260408|ADAM10;REV__ENST00000396136.6_1_15:58889748-58968450:-|nuORF REV__ENSG00000137845|ENST00000260408|ADAM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3407592773438 2 522.337833 1042.66111 1.6602 0.00086718 1.4803 0.00077322 3.1405 0.0016404 522.3385940115203 104.33 0.085915 98.15 98.088 98.174 -6.1757 16 11 2 0 0 0 0.80992 1 69876 69876 0.69038 0 1 4561800 + 65930 20275;26500 43863 44860 76979 76979 0.14148819733804885 TRKKRRRGPL 10 Unmodified _TRKKRRRGPL_ 0 0 0 REV__nc|ENSG00000028277|P09086-4|POU2F2 REV__nc|ENSG00000028277|P09086-4|POU2F2 MSMS AL20221201_MKP_PDAC_01 4 634.4118041992188 2 634.412729 1266.8109 NaN NaN NaN NaN NaN NaN NaN 104.32 1 98.146 97.646 98.646 -6.1757 0 0 0 0.99091 1 69873 69873 1.6526 0.32309 1 + 65931 17137 43864 44861 76980 76980 0.18817184796262154 TRKLAAKAK 9 Unmodified _TRKLAAKAK_ 0 0 0 REV__nc|ENSG00000142230|Q9UBE0-2|SAE1 REV__nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.8275756835938 2 493.827101 985.639649 0.51647 0.00025505 -0.30208 -0.00014918 0.21439 0.00010587 493.82678547023426 102.66 0.32896 102.55 102.38 102.71 -0.10458 19 14 2 0 0 0 0.62242 1 56018 56018 0 0 1 253660 + 65932 20565 43865 44862 76981 76981 0.14625434705055795 TRKLKKKK 8 Unmodified _TRKLKKKK_ 0 0 0 ENSG00000163064|ENST00000295206|EN1 ENSG00000163064|ENST00000295206|EN1 ENSG00000163064|ENST00000295206|EN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1029.723022460938 1 1029.72551 1028.71823 0.34461 0.00035486 -0.22799 -0.00023477 0.11662 0.00012009 1029.7253071126597 67.378 0.13749 66.896 66.802 66.939 -0.48219 6 5 2 0 0 0 0.81107 1 36796 36796 0 0 1 488230 65933 6945 43866 44863 76982 76982 0.20502287010162945 TRKLLFKFV 9 Unmodified _TRKLLFKFV_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;nc|ENSG00000168538|Q7Z392-2|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MSMS AL20221201_MKP_PDAC_01 4 384.5819702148438 3 384.581493 1150.72265 NaN NaN NaN NaN NaN NaN NaN 42.623 1 37.938 37.438 38.438 -4.6846 0 0 0 0.84564 1 25770 25770 1.0715 0.29493 1 65934 7776;16369 43867 44864 76983 76983 0.153317514330638 TRKRLKKL 8 Unmodified _TRKRLKKL_ 0 0 0 ENST00000401788.2_1_6:27978946-27979378:+|nuORF;ENSG00000173226|ENST00000310864|IQCB1 ENST00000401788.2_1_6:27978946-27979378:+|nuORF ENST00000401788.2_1_6:27978946-27979378:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1042.550659179688 1 1042.72076 1041.71348 0.25208 0.00026285 0.67465 0.00070347 0.92672 0.00096631 1042.722172980175 52.87 0.23455 52.418 52.261 52.496 -0.45173 14 11 2 0 0 0 8.7369 1 28500 28500 0 0 1 3710000 65935 8302 43868 44865 76984 76984 0.1942940286742214 TRKRRRKRKKR 11 Unmodified _TRKRRRKRKKR_ 0 0 0 ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF ENST00000308478.9_1_7:110731416-110762496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 785.2783203125 2 785.029657 1568.04476 NaN NaN NaN NaN NaN NaN NaN 19.572 1 19.572 19.072 20.072 0 0 0 0 0.9435 1 9796 9796 0 0 1 65936 11653 43869 44866 76985 76985 0.2834608095558906 TRKRVIHRRRM 11 Unmodified _TRKRVIHRRRM_ 0 0 0 REV__ENSG00000146648|ENST00000275493|EGFR REV__ENSG00000146648|ENST00000275493|EGFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 754.959716796875 2 754.962594 1507.91064 NaN NaN NaN NaN NaN NaN NaN 83.599 1 83.662 83.162 84.162 0.063171 0 0 0 0.94307 1 46252 46252 0.30703 0.30703 1 + 65937 20845 43870 44867 76986 76986 0.17699679138513602 TRLCLPPEML 10 Unmodified _TRLCLPPEML_ 0 0 0 nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 nc|ENSG00000011021|P51797-5|CLCN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5455627441406 3 391.543722 1171.60934 0.88152 0.00034515 1.1321 0.00044328 2.0136 0.00078843 391.5451847251401 18.033 0.51264 15.412 15.126 15.638 -2.6215 148 42 5 0 0 0 0.50362 1 9488 9488 10.315 0 1 102660000 65938 16018 43871 44868 76987 76987 0.03039571933368279 TRLQEESF 8 Unmodified _TRLQEESF_ 0 0 0 REV__ENSG00000136002|ENST00000409359|ARHGEF4 REV__ENSG00000136002|ENST00000409359|ARHGEF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2506103515625 2 505.251089 1008.48762 NaN NaN NaN NaN NaN NaN NaN 24.9 1 24.9 24.4 25.4 0 0 0 0 0.92941 1 12740 12740 14.838 0 1 + 65939 20126 43872 44869 76988 76988 -0.016280108331329757 TRLQFVHP 8 Unmodified _TRLQFVHP_ 0 0 0 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 REV__nc|ENSG00000125637|Q8NDX1-2|PSD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2816467285156 2 499.282526 996.550499 NaN NaN NaN NaN NaN NaN NaN 103.47 1 103.42 102.92 103.92 -0.047928 0 0 0 0.97444 1 57462 57462 0.79363 0 1 + 65940 19503 43873 44870 76989 76989 0.05208599745560605 TRLTNLLL 8 Unmodified _TRLTNLLL_ 0 0 0 REV__ENST00000550173.1_2_12:46633588-46662751:-|nuORF REV__ENST00000550173.1_2_12:46633588-46662751:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.301513671875 2 472.300384 942.586216 NaN NaN NaN NaN NaN NaN NaN 52.208 1 52.208 51.708 52.708 0 0 0 0 0.95201 1 28884 28884 10.183 0 1 + 65941 28699 43874 44871 76990 76990 0.11262637202582937 TRMARLSQHA 10 Unmodified _TRMARLSQHA_ 0 0 0 REV__ENST00000450006.7_1_8:21957330-21958249:+|nuORF REV__ENST00000450006.7_1_8:21957330-21958249:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.8775329589844 3 390.876863 1169.60876 0.40509 0.00015834 1.2457 0.00048692 1.6508 0.00064526 390.87719444248523 50.923 0.51642 50.869 50.49 51.007 -0.053871 72 25 4 0 0 0 0.69917 1 27432 27432 1.4551 0.75745 1 11091000 + 65942 27194 43875 44872 76991 76991 0.030739133285351272 TRNTHDIYY 9 Unmodified _TRNTHDIYY_ 0 0 0 REV__nc|ENSG00000113645|Q8IX03-2|WWC1 REV__nc|ENSG00000113645|Q8IX03-2|WWC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8565979003906 3 394.856122 1181.54654 -0.44106 -0.00017416 0.42177 0.00016654 -0.019295 -7.6189E-06 394.85624374212586 21.243 0.13062 21.243 21.174 21.304 0 42 18 3 0 0 0 0.56345 1 10704 10704 2.086 0.49373 1 3110800 + 65943 18884 43876 44873 76992 76992 -0.03697534538810032 TRPDQFYQI 9 Unmodified _TRPDQFYQI_ 0 0 0 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 REV__nc|ENSG00000056586|Q9HBD1-6|RC3H2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2965698242188 2 584.293288 1166.57202 0.6429 0.00037564 0.9234 0.00053954 1.5663 0.00091518 584.29376248948 43.315 1.5789 38.55 38.197 39.775 -4.7648 415 107 6 0 0 0 0.28023 1 27046 27046 18.146 18.146 1 6745599999.999999 + 65944 17299 43877 44874 76993 76993 -0.004600600163939816 TRPEVYFLLVQ 11 Unmodified _TRPEVYFLLVQ_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.8809204101562 2 682.88227 1363.74999 0.26184 0.00017881 -2.5992 -0.0017749 -2.3373 -0.0015961 683.3819861446606 51.739 0.21869 51.68 51.553 51.772 -0.058918 18 10 2 0 0 0 0.68282 1 28026 28026 10.8 5.9025 1 1606100 65945 3172 43878 44875 76994 76994 0.08266190182803257 TRPEVYFLLVQ 11 Unmodified _TRPEVYFLLVQ_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 682.88227 1363.74999 0.43497 0.00029703 -2.7247 -0.0018607 -2.2898 -0.0015636 682.8808225315192 51.424 0.174 51.424 51.326 51.5 0 -0.14161 0.00019329 NaN 10.8 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 666530 65946 3172 43878 44875 0.08266190182803257 TRPEVYFLLVQ 11 Unmodified _TRPEVYFLLVQ_ 0 0 0 nc|ENSG00000115896|Q15111-2|PLCL1;ENSG00000115896|ENST00000428675|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 682.88227 1363.74999 0.37364 0.00025515 -3.7526 -0.0025626 -3.3789 -0.0023074 683.3815095567378 52.026 0.19453 51.593 51.494 51.688 -0.43367 0.027335 -0.0012105 NaN 10.8 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1242900 65947 3172 43878 44875 0.08266190182803257 TRPPKLVL 8 Unmodified _TRPPKLVL_ 0 0 0 ENSG00000110042|ENST00000227451|DTX4;nc|ENSG00000110042|Q9Y2E6-2|DTX4 ENSG00000110042|ENST00000227451|DTX4 ENSG00000110042|ENST00000227451|DTX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.3066711425781 2 462.30547 922.596387 1.6862 0.00077955 -0.37081 -0.00017143 1.3154 0.00060813 462.3053275115814 41.755 0.29328 37.147 36.969 37.262 -4.6079 27 18 2 0 0 0 0.50364 1 25074 25074 34.402 2.2848 1 7452900 65948 2692 43879 44876 76995 76995 0.13199244927784548 TRPPVPIP 8 Unmodified _TRPPVPIP_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20221201_MKP_PDAC_01 4 438.7693786621094 2 438.76872 875.522887 NaN NaN NaN NaN NaN NaN NaN 104.67 1 98.498 97.998 98.998 -6.1757 0 0 0 0.97444 1 70083 70083 0.79363 0 1 65949 16152 43880 44877 76996 76996 0.08014696485315653 TRQHEIMRS 9 Unmodified _TRQHEIMRS_ 0 0 0 REV__ENSG00000256087|ENST00000221315|ZNF432 REV__ENSG00000256087|ENST00000221315|ZNF432 MSMS AL20221201_MKP_PDAC_01 4 386.5342407226562 3 386.532985 1156.57712 NaN NaN NaN NaN NaN NaN NaN 25.945 1 22.994 22.494 23.494 -2.9511 0 0 0 0.81228 1 14241 14241 3.5871 0 1 + 65950 24550 43881 44878 76997 76997 0.00509920574586431 TRQLPLLTSA 10 Unmodified _TRQLPLLTSA_ 0 0 0 ENSG00000165271|ENST00000297990|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;nc|ENSG00000165271|Q9H6R4-2|NOL6 ENSG00000165271|ENST00000297990|NOL6 ENSG00000165271|ENST00000297990|NOL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3262939453125 2 550.327131 1098.63971 0.30011 0.00016516 -0.59535 -0.00032764 -0.29524 -0.00016248 550.3268077915478 59.617 0.19434 59.564 59.44 59.634 -0.053062 13 9 2 0 0 0 0.36296 1 32517 32517 23.79 2.1996 1 3452900 65951 7316 43882 44879 76998 76998 0.09433389914443069 TRRGRRPA 8 Unmodified _TRRGRRPA_ 0 0 0 nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A nc|ENSG00000112425|B3EWF7|EPM2A MSMS AL20221201_MKP_PDAC_01 4 485.2958374023438 2 485.294291 968.574029 NaN NaN NaN NaN NaN NaN NaN 105.16 1 98.983 98.483 99.483 -6.1757 0 0 0 0.97444 1 70439 70439 0 0 1 65952 16127 43883 44880 76999 76999 0.08848458302736617 TRRHIRRLRLL 11 Unmodified _TRRHIRRLRLL_ 0 0 0 REV__nc|ENSG00000197217|Q9Y227-2|ENTPD4 REV__nc|ENSG00000197217|Q9Y227-2|ENTPD4 MSMS AL20221201_MKP_PDAC_01 4 745.4933471679688 2 745.48676 1488.95897 NaN NaN NaN NaN NaN NaN NaN 104.54 1 98.364 97.864 98.864 -6.1757 0 0 0 0.9435 1 70004 70004 0 0 1 + 65953 23907 43884 44881 77000 77000 0.23404496050102352 TRRKKRLLRVR 11 Unmodified _TRRKKRLLRVR_ 0 0 0 chr16:67929848-67929952|48|70.62|0.94|6.23|-|1|None,CTRL|1 chr16:67929848-67929952|48|70.62|0.94|6.23|-|1|None,CTRL|1 chr16:67929848-67929952|48|70.62|0.94|6.23|-|1|None,CTRL|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.5004272460938 2 741.50241 1480.99027 NaN NaN NaN NaN NaN NaN NaN 92.11 1 92.11 91.61 92.61 0 0 0 0 0.9435 1 50933 50933 0 0 1 65954 92 43885 44882 77001 77001 0.26901069084192386 TRRKQRRRWLL 11 Unmodified _TRRKQRRRWLL_ 0 0 0 REV__ENSG00000197471|ENST00000652691|SPN REV__ENSG00000197471|ENST00000652691|SPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.859130859375 2 784.989666 1567.96478 NaN NaN NaN NaN NaN NaN NaN 90.988 1 91.024 90.524 91.524 0.036499 0 0 0 0.9435 1 50609 50609 0 0 1 + 65955 23929 43886 44883 77002 77002 0.2035159456177098 TRRLLKNRSSE 11 Unmodified _TRRLLKNRSSE_ 0 0 0 REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1 REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1 MSMS AL20221201_MKP_PDAC_01 4 453.9311828613281 3 453.932025 1358.77424 NaN NaN NaN NaN NaN NaN NaN 19.532 1 16.875 16.375 17.375 -2.6564 0 0 0 0.93984 1 10354 10354 2.6312 0 1 + 65956 23914 43887 44884 77003 77003 0.10920843389044421 TRRPPATA 8 Unmodified _TRRPPATA_ 0 0 0 CLEC14A|p.S312N|1|0.17|ENSG00000176435|chr14:38255088-38255088|C/T|missense_variant;ENSG00000176435|ENST00000342213|CLEC14A CLEC14A|p.S312N|1|0.17|ENSG00000176435|chr14:38255088-38255088|C/T|missense_variant CLEC14A|p.S312N|1|0.17|ENSG00000176435|chr14:38255088-38255088|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2517395019531 2 435.251226 868.487899 0.82226 0.00035789 -0.27971 -0.00012174 0.54255 0.00023615 435.2510010470552 80.761 0.53232 80.269 79.981 80.513 -0.49247 72 22 4 0 0 0 0.81107 2 44156 44156;44257 0 0 1 22888000 65957 127 43888 44885 77004;77005 77004 0.04839453677357142 TRRRIRRAR 9 Unmodified _TRRRIRRAR_ 0 0 0 REV__ENSG00000171222|ENST00000305978|SCAND1 REV__ENSG00000171222|ENST00000305978|SCAND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2691955566406 3 414.269305 1239.78609 NaN NaN NaN NaN NaN NaN NaN 96.864 1 96.559 96.059 97.059 -0.30472 0 0 0 0.86004 1 52896 52896 0.26902 0 1 + 65958 22545 43889 44886 77006 77006 0.1757854971353936 TRRRRQLAKHI 11 Unmodified _TRRRRQLAKHI_ 0 0 0 REV__nc|ENSG00000167861|Q8IV36-3|HID1 REV__nc|ENSG00000167861|Q8IV36-3|HID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 718.4500732421875 2 717.947467 1433.88038 1.3604 0.0009767 0.97639 0.000701 2.3368 0.0016777 717.9484415867705 104.98 0.12006 98.807 98.736 98.856 -6.1757 19 8 3 0 0 0 0.71618 1 70274 70274 2.7352 0 1 41057000 + 65959 22257 43890 44887 77007 77007 0.18079643745022622 TRRSRSRTVF 10 Unmodified _TRRSRSRTVF_ 0 0 0 REV__ENST00000229214.8_1_12:75902094-75905340:-|nuORF REV__ENST00000229214.8_1_12:75902094-75905340:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2461547851562 3 422.577693 1264.71125 NaN NaN NaN NaN NaN NaN NaN 17.245 1 17.25 16.75 17.75 0.0050564 0 0 0 0.98914 1 8690 8690 0.77653 0 1 + 65960 24802 43891 44888 77008 77008 0.0894832239164316 TRSAGLNKWQL 11 Unmodified _TRSAGLNKWQL_ 0 0 0 nc|ENSG00000170234|Q96N64-2|PWWP2A nc|ENSG00000170234|Q96N64-2|PWWP2A nc|ENSG00000170234|Q96N64-2|PWWP2A MSMS AL20221201_MKP_PDAC_01 4 425.2394409179688 3 425.238566 1272.69387 NaN NaN NaN NaN NaN NaN NaN 39.532 1 35.081 34.581 35.581 -4.4509 0 0 0 0.48869 1 23475 23475 24.957 8.8199 1 65961 16376 43892 44889 77009 77009 0.06842982065973047 TRSETFNLLF 10 Unmodified _TRSETFNLLF_ 0 0 0 REV__ENSG00000081051|ENST00000395792|AFP REV__ENSG00000081051|ENST00000395792|AFP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.8223876953125 2 614.322045 1226.62954 0.63838 0.00039217 -0.26724 -0.00016417 0.37114 0.000228 614.3216713459873 67.544 0.2263 67.061 66.939 67.165 -0.48218 20 9 3 0 0 0 0.64183 1 36903 36903 14.838 6.245 1 1999100 + 65962 17680 43893 44890 77010 77010 0.025287821891879503 TRSPLLTQL 9 Unmodified _TRSPLLTQL_ 0 0 0 ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.81005859375 2 514.808574 1027.60259 0.019426 1.0001E-05 -0.55893 -0.00028774 -0.5395 -0.00027774 514.8078457640178 65.632 0.35976 65.148 65 65.36 -0.48428 34 15 3 0 0 0 0.062454 1 35815 35815 41.956 0 1 2378100 65963 3434 43894 44891 77011 77011 0.0898971836866167 TRSSGSERS 9 Unmodified _TRSSGSERS_ 0 0 0 nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS nc|ENSG00000099869|Q6U949|IGF2-AS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7332458496094 2 483.733594 965.452636 NaN NaN NaN NaN NaN NaN NaN 20.621 1 20.65 20.15 21.15 0.028357 0 0 0 0.8622 1 10442 10442 0 0 1 65964 16080 43895 44892 77012 77012 -0.0314725364108881 TRSTFSTNY 9 Unmodified _TRSTFSTNY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7540283203125 2 538.753995 1075.49344 -0.49928 -0.00026899 0.41195 0.00022194 -0.087326 -4.7047E-05 538.754339825547 27.515 0.2282 27.515 27.41 27.638 0 27 10 3 0 0 0 0.01861 1 14164 14164 70.332 12.61 1 8151500 65965 2759 43896 44893 77013 77013 -0.041289123214710344 TRSTFSTNY 9 Unmodified _TRSTFSTNY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7537841796875 2 538.753995 1075.49344 0.37356 0.00020126 0.5391 0.00029044 0.91266 0.0004917 538.7545315192074 27.491 0.14025 27.445 27.371 27.512 -0.046408 11 6 2 0 0 0 0.08907 1 14169 14169 38.176 0 1 3389200 65966 2759 43896 44893 77014 77014 -0.041289123214710344 TRTEIIIL 8 Unmodified _TRTEIIIL_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000529173.5_1_11:75110591-75112804:+|nuORF ENSG00000149273|ENST00000531188|RPS3 ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.8004455566406 2 479.800217 957.585882 0.1851 8.881E-05 -0.58917 -0.00028269 -0.40408 -0.00019388 479.79997209429473 62.253 0.32827 62.253 62.018 62.346 0 25 16 2 0 0 0 0.73714 1 34759 34759 13.906 0 1 3594900 65967 5998 43897 44894 77015 77015 0.10539217482721597 TRTLRPSL 8 Unmodified _TRTLRPSL_ 0 0 0 REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.288330078125 2 472.287808 942.561064 1.1908 0.0005624 -0.47446 -0.00022408 0.71635 0.00033832 472.28775297388285 95.391 0.96101 89.215 88.787 89.748 -6.1757 189 56 5 0 0 0 0.81031 1 63104 63104 0.45834 0 1 250360000 + 65968 29092 43898 44895 77016 77016 0.08748582399982752 TRTSWTKETLF 11 Unmodified _TRTSWTKETLF_ 0 0 0 ENST00000358704.4_1_1:244217197-244217299:+|nuORF ENST00000358704.4_1_1:244217197-244217299:+|nuORF ENST00000358704.4_1_1:244217197-244217299:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.2422790527344 3 457.241865 1368.70376 NaN NaN NaN NaN NaN NaN NaN 48.141 1 42.907 42.407 43.407 -5.2339 0 0 0 0.64436 1 29957 29957 19.144 2.8694 1 65969 12132 43899 44896 77017 77017 0.03416125280705273 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2998046875 2 547.298039 1092.58152 0.46229 0.00025301 0.24043 0.00013159 0.70272 0.0003846 547.2982005931315 67.429 0.44607 67.429 67.175 67.621 0 42 19 3 0 0 0 0.2324 1 37540 37540 20.415 2.2682 1 4543900 65970 1354 43900 44897 77018 77018 0.0389370826915183 TRVDTILEF 9 Unmodified _TRVDTILEF_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000476585.5_1_2:61729332-61753650:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2991333007812 2 547.298039 1092.58152 0.49767 0.00027237 0.97636 0.00053436 1.474 0.00080674 547.2988619027961 67.798 0.44202 67.316 67.096 67.538 -0.48218 44 19 3 0 0 0 0.062454 2 37094 36997;37094 41.956 19.219 1 5919400 65971 1354 43900 44897 77019;77020 77020 0.0389370826915183 TRVKAVRIL 9 Unmodified _TRVKAVRIL_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.57373046875 3 352.573109 1054.6975 1.4712 0.00051869 -0.21657 -7.6358E-05 1.2546 0.00044233 352.5729634803009 30.192 0.18101 26.695 26.631 26.812 -3.497 12 8 2 0 0 0 0.02676 1 17034 17034 57.108 31.087 1 13678000 65972 10861 43901 44898 77021 77021 0.17233696630501072 TRVKPRVVL 9 Unmodified _TRVKPRVVL_ 0 0 0 REV__ENSG00000198932|ENST00000537097|GPRASP1;REV__ENSG00000158301|ENST00000483720|GPRASP2 REV__ENSG00000198932|ENST00000537097|GPRASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.5732116699219 3 356.573109 1066.6975 1.1507 0.0004103 -0.4376 -0.00015604 0.71307 0.00025426 356.57305689747403 27.378 0.32211 24.341 24.219 24.541 -3.0365 34 15 3 0 0 0 0.43515 1 15283 15283 10.8 3.1906 1 28983000 + 65973 24102;21426 43902 44899 77022 77022 0.16681696630507759 TRVTVLIFL 9 Unmodified _TRVTVLIFL_ 0 0 0 REV__ENST00000550434.1_1_12:49934893-49937626:+|nuORF REV__ENST00000550434.1_1_12:49934893-49937626:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.34033203125 2 531.33951 1060.66447 1.8298 0.00097225 -0.30024 -0.00015953 1.5296 0.00081272 531.3394556346137 93.326 0.45998 93.349 93.16 93.62 0.022987 40 17 3 0 0 0 0.2324 1 51875 51875 20.415 0 1 6239000 + 65974 28702 43903 44900 77023 77023 0.13656069787793967 TRVTVLIFL 9 Unmodified _TRVTVLIFL_ 0 0 0 REV__ENST00000550434.1_1_12:49934893-49937626:+|nuORF REV__ENST00000550434.1_1_12:49934893-49937626:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7963256835938 2 531.33951 1060.66447 1.8298 0.00097225 -0.30024 -0.00015953 1.5296 0.00081272 531.3394556346137 93.326 0.45998 93.349 93.16 93.62 0.022987 40 17 3 0 0 0 0.18094 1 51926 51926 20.415 0 1 6239000 + 65975 28702 43903 44900 77024 77024 0.13656069787793967 TRWFHTRRHWW 11 Unmodified _TRWFHTRRHWW_ 0 0 0 REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF REV__ENST00000322893.11_1_14:63483627-63512140:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.92578125 2 834.923992 1667.83343 NaN NaN NaN NaN NaN NaN NaN 86.36 1 86.419 85.919 86.919 0.05822 0 0 0 0.9435 1 47939 47939 0 0 1 + 65976 25522 43904 44901 77025 77025 0.026227841938862184 TRWSWWHWTVR 11 Unmodified _TRWSWWHWTVR_ 0 0 0 ENST00000508784.5_1_4:146824055-146859708:-|nuORF ENST00000508784.5_1_4:146824055-146859708:-|nuORF ENST00000508784.5_1_4:146824055-146859708:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.8995971679688 2 800.899651 1599.78475 NaN NaN NaN NaN NaN NaN NaN 77.974 1 77.974 77.474 78.474 0 0 0 0 0.9435 1 43342 43342 0 0 1 65977 14566 43905 44902 77026 77026 0.008848708340792655 TRYFVSNI 8 Unmodified _TRYFVSNI_ 0 0 0 ENST00000577043.1_1_16:2867692-2871170:+|nuORF;nc|ENSG00000007038|Q9Y6M0-3|PRSS21;nc|ENSG00000007038|Q9Y6M0-2|PRSS21;ENSG00000007038|ENST00000005995|PRSS21 ENST00000577043.1_1_16:2867692-2871170:+|nuORF ENST00000577043.1_1_16:2867692-2871170:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.2645874023438 2 500.266542 998.51853 NaN NaN NaN NaN NaN NaN NaN 46.831 1 41.751 41.251 42.251 -5.0805 0 0 0 0.9192 1 28996 28996 16.942 1.0951 1 65978 15526 43906 44903 77027 77027 0.01921187271761937 TRYRRQKRKLL 11 Unmodified _TRYRRQKRKLL_ 0 0 0 REV__ENSG00000004848|ENST00000379044|ARX REV__ENSG00000004848|ENST00000379044|ARX MSMS AL20221201_MKP_PDAC_01 4 759.4790649414062 2 759.4786 1516.94265 NaN NaN NaN NaN NaN NaN NaN 104.58 1 98.403 97.903 98.903 -6.1757 0 0 0 0.9435 1 70027 70027 0 0 1 + 65979 16954 43907 44904 77028 77028 0.20485370093365418 TSAAIYHVL 9 Unmodified _TSAAIYHVL_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7691955566406 2 487.768917 973.523281 0.22421 0.00010936 0.65771 0.00032081 0.88191 0.00043017 487.7690774791843 50.376 0.28232 50.376 50.236 50.518 0 32 12 3 0 0 0 0.0089973 1 27740 27740 86.121 53.816 1 5347200 65980 4654 43908 44905 77029 77029 0.03546071414530161 TSAAIYHVL 9 Unmodified _TSAAIYHVL_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7695617675781 2 487.768917 973.523281 0.82096 0.00040044 0.65106 0.00031757 1.472 0.00071801 487.76888861863483 50.748 0.32792 50.334 50.17 50.498 -0.41351 37 15 3 0 0 0 0.012158 1 27367 27367 74.396 36.422 1 6249700 65981 4654 43908 44905 77030 77030 0.03546071414530161 TSAAIYHVL 9 Unmodified _TSAAIYHVL_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7694091796875 2 487.768917 973.523281 0.69273 0.00033789 0.39629 0.0001933 1.089 0.00053119 487.7689812528909 55.744 0.5152 49.823 49.638 50.153 -5.9211 72 30 3 0 0 0 0.019979 2 35668 35533;35668 63.563 38.164 1 47773000 65982 4654 43908 44905 77031;77032 77032 0.03546071414530161 TSAEASVEM 9 Unmodified _TSAEASVEM_ 0 0 0 ENSG00000115207|ENST00000264720|GTF3C2;nc|ENSG00000115207|Q8WUA4-2|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 ENSG00000115207|ENST00000264720|GTF3C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 924.3973999023438 1 924.397889 923.390612 0.92033 0.00085075 -0.38682 -0.00035757 0.53351 0.00049318 924.3977561595312 36.913 0.1778 32.63 32.472 32.65 -4.2835 11 10 2 0 0 0 0.012148 1 21589 21589 74.423 32.328 1 2164500 65983 3095 43909 44906 77033 77033 -0.07414741104435052 TSAFCVRAIL 10 Unmodified _TSAFCVRAIL_ 0 0 0 nc|ENSG00000253771|Q5T6R2-2|TPTE2P1;nc|ENSG00000253771|Q5T6R2|TPTE2P1 nc|ENSG00000253771|Q5T6R2-2|TPTE2P1 nc|ENSG00000253771|Q5T6R2-2|TPTE2P1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7984619140625 2 540.797152 1079.57975 3.8078 0.0020592 -1.4525 -0.00078551 2.3553 0.0012737 540.7965488964774 98.437 0.36552 98.409 98.244 98.61 -0.028282 28 13 3 0 0 0 0.27276 1 54658 54658 29.082 5.061 1 3448800 65984 16582 43910 44907 77034 77034 0.04314375979538454 TSCCCSCYSAT 11 Unmodified _TSCCCSCYSAT_ 0 0 0 REV__ENST00000463900.5_1_2:74756401-74756618:-|nuORF REV__ENST00000463900.5_1_2:74756401-74756618:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.6018676757812 2 564.67687 1127.33919 NaN NaN NaN NaN NaN NaN NaN 102.72 1 102.67 102.17 103.17 -0.047928 0 0 0 0.9435 1 57049 57049 0 0 1 + 65985 27363 43911 44908 77035 77035 -0.2193889245668288 TSCMVVQAF 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))MVVQAF_ TSC(1)MVVQAF TSC(68)MVVQAF 0 1 0 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000450172.5_2_3:46722734-46730936:-|nuORF;ENST00000431015.5_2_3:46722577-46730936:-|nuORF ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7391967773438 2 521.738445 1041.46234 0.87184 0.00045487 -0.46907 -0.00024473 0.40276 0.00021014 521.7383560050171 67.362 0.37169 61.186 60.981 61.352 -6.1757 36 20 2 0 0 0 0.015445 1 43827 43827 68.081 47.627 1 15621000 65986 8725 43912 44909 77036 77036 831 -0.05673524951566833 TSCPLVTGY 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))PLVTGY_ TSC(1)PLVTGY TSC(130)PLVTGY 0 1 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.4661865234375 1 997.465909 996.458632 1.0989 0.0010962 0.2137 0.00021316 1.3126 0.0013093 997.4661940130533 53.93 0.33477 48.065 47.912 48.247 -5.8653 40 19 3 0 0 0 0.0026776 2 34220 34083;34220 128.37 70.894 1 15229000 65987 4966 43913 44910 77037;77038 77038 515 -0.03973871453774791 TSCPLVTGY 9 Carbamidomethyl (C) _TSC(Carbamidomethyl (C))PLVTGY_ TSC(1)PLVTGY TSC(48)PLVTGY 0 1 0 ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR ENSG00000137767|ENST00000260324|SQOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2383117675781 2 499.236593 996.458632 1.347 0.00067249 -0.84729 -0.000423 0.49975 0.00024949 499.2361833661232 53.966 0.33576 48.1 47.947 48.283 -5.8653 34 19 2 0 0 0 0.042911 1 34111 34111 48.346 25.197 1 23340000 65988 4966 43913 44910 77039 77039 515 -0.03973871453774791 TSDGAHES 8 Unmodified _TSDGAHES_ 0 0 0 REV__nc|ENSG00000005810|O75592-2|MYCBP2 REV__nc|ENSG00000005810|O75592-2|MYCBP2 MSMS AL20221201_MKP_PDAC_01 4 402.2901916503906 2 402.161939 802.309325 NaN NaN NaN NaN NaN NaN NaN 105.83 1 99.658 99.158 100.16 -6.1757 0 0 0 0.97444 1 70883 70883 2.5775 0 1 + 65989 16974 43914 44911 77040 77040 -0.09973680752170822 TSDLWTTEF 9 Unmodified _TSDLWTTEF_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5050354003906 3 367.169595 1098.48696 -0.37332 -0.00013707 1.4753 0.00054169 1.102 0.00040462 367.17029318713 21.801 0.20471 21.801 21.696 21.901 0 59 33 2 0 0 0 0.54444 1 11020 11020 2.7352 0 1 2685300 + 65990 21352 43915 44912 77041 77041 -0.0583485027284496 TSDLWTTEF 9 Unmodified _TSDLWTTEF_ 0 0 0 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 367.169595 1098.48696 0.89748 0.00032953 1.8916 0.00069455 2.7891 0.0010241 367.1702785556038 24.427 0.30901 21.6 21.486 21.795 -2.8273 -0.10027 0.00026954 NaN 2.7352 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 6618600 + 65991 21352 43915 44912 -0.0583485027284496 TSENGWTAL 9 Unmodified _TSENGWTAL_ 0 0 0 ENSG00000112874|ENST00000230792|NUDT12;nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENST00000508889.1_1_5:102895742-102898461:-|nuORF ENSG00000112874|ENST00000230792|NUDT12 ENSG00000112874|ENST00000230792|NUDT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7295837402344 2 489.729989 977.445425 0.56196 0.00027521 -0.36123 -0.00017691 0.20073 9.8303E-05 489.72974889104916 45.914 0.44194 45.914 45.722 46.164 0 44 21 3 0 0 0 0.2143 1 25055 25055 21.747 21.747 1 16161000 65992 2927 43916 44913 77042 77042 -0.044199862415439384 TSENLKTF 8 Unmodified _TSENLKTF_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 470.2419738769531 2 470.242732 938.470912 NaN NaN NaN NaN NaN NaN NaN 57.459 1 51.431 50.931 51.931 -6.0275 0 0 0 0.77249 1 36750 36750 24.674 0 1 + 65993 24515 43917 44914 77043 77043 -0.0007851171909578625 TSEQYELRFR 10 Unmodified _TSEQYELRFR_ 0 0 0 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 ENSG00000125531|ENST00000370097|FNDC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.8333740234375 2 664.833308 1327.65206 0.69829 0.00046425 -0.27131 -0.00018038 0.42698 0.00028387 664.8331965935399 59.154 0.28475 59.093 58.901 59.186 -0.060719 34 13 4 0 0 0 0.63399 1 32188 32188 9.3831 0.63772 1 9457900 65994 3860 43918 44915 77044 77044 0.0013438158678127365 TSFCAKYTY 9 Unmodified _TSFCAKYTY_ 0 0 0 ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE ENSG00000112039|ENST00000229769|FANCE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2435302734375 2 542.244418 1082.47428 -0.18983 -0.00010294 -1.8604 -0.0010088 -2.0503 -0.0011117 542.2434999198597 22.539 0.40939 22.539 22.345 22.754 0 36 19 2 0 0 0 0.51218 1 11407 11407 6.7232 0.99131 1 1147300 65995 2851 43919 44916 77045 77045 -0.06365584936747837 TSFDKFYKY 9 Unmodified _TSFDKFYKY_ 0 0 0 ENST00000582377.1_1_17:11998936-12013832:+|nuORF;ENST00000602537.5_1_17:11984679-12043167:+|nuORF;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000582377.1_1_17:11998936-12013832:+|nuORF ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5315856933594 3 400.197485 1197.57063 0.059965 2.3998E-05 0.29268 0.00011713 0.35264 0.00014113 400.5318272948576 42.356 0.21712 42.347 42.227 42.444 -0.0088196 15 9 2 0 0 0 0.29507 1 22688 22688 17.443 12.395 1 5711800 65996 909 43920 44917 77046 77046 -0.020256941051457034 TSFDKFYKY 9 Unmodified _TSFDKFYKY_ 0 0 0 ENST00000582377.1_1_17:11998936-12013832:+|nuORF;ENST00000602537.5_1_17:11984679-12043167:+|nuORF;ENSG00000065559|ENST00000353533|MAP2K4;nc|ENSG00000065559|P45985-2|MAP2K4 ENST00000582377.1_1_17:11998936-12013832:+|nuORF ENST00000582377.1_1_17:11998936-12013832:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.1970825195312 3 400.197485 1197.57063 1.5664 0.00062686 -0.76467 -0.00030602 0.80171 0.00032084 400.19701147654143 47.502 0.51218 42.268 42.087 42.599 -5.2339 52 29 3 0 0 0 0.19361 1 29460 29460 23.79 11.615 1 14867000 65997 909 43920 44917 77047 77047 -0.020256941051457034 TSFEPNEP 8 Unmodified _TSFEPNEP_ 0 0 0 REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7035827636719 2 460.70344 919.392327 0.6051 0.00027877 0.22179 0.00010218 0.82689 0.00038095 460.7034909234894 38.018 0.30209 38.018 37.846 38.148 0 42 14 4 0 0 0 0.65867 1 20340 20340 20.871 1.4322 1 13448000 + 65998 26797 43921 44918 77048 77048 -0.07059364024189563 TSFKYVEYF 9 Unmodified _TSFKYVEYF_ 0 0 0 ENSG00000137040|ENST00000259569|RANBP6 ENSG00000137040|ENST00000259569|RANBP6 ENSG00000137040|ENST00000259569|RANBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2874145507812 2 592.28714 1182.55973 0.45868 0.00027167 -0.90539 -0.00053625 -0.44671 -0.00026458 592.2864908360812 91.938 0.82333 91.457 91.189 92.012 -0.48092 178 44 6 0 0 0 0.58466 1 50529 50529 2.3027 0 1 197700000 65999 4893 43922 44919 77049 77049 -0.024250964794418906 TSFLPPRP 8 Unmodified _TSFLPPRP_ 0 0 0 ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 ENSG00000161681|ENST00000293441|SHANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7597045898438 2 457.758352 913.502152 1.0662 0.00048806 -0.54341 -0.00024875 0.52278 0.00023931 457.75795501897466 48.399 0.36134 43.166 42.94 43.302 -5.2339 40 21 3 0 0 0 0.44122 1 30179 30179 40.449 2.2974 1 31292000 66000 6805 43923 44920 77050 77050 0.04194106105660467 TSFLSLTSN 9 Unmodified _TSFLSLTSN_ 0 0 0 ENST00000518468.1_3_8:53599460-53658116:-|nuORF ENST00000518468.1_3_8:53599460-53658116:-|nuORF ENST00000518468.1_3_8:53599460-53658116:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 485.2468566894531 2 485.248015 968.481476 NaN NaN NaN NaN NaN NaN NaN 24.203 1 21.376 20.876 21.876 -2.8273 0 0 0 0.18753 1 13159 13159 32.305 9.1571 1 66001 14690 43924 44921 77051 77051 -0.0040252906468367655 TSGFSRAP 8 Unmodified _TSGFSRAP_ 0 0 0 ENST00000298004.9_3_9:35092613-35092670:-|nuORF ENST00000298004.9_3_9:35092613-35092670:-|nuORF ENST00000298004.9_3_9:35092613-35092670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7086181640625 2 411.70886 821.403166 -0.53626 -0.00022078 0.05498 2.2636E-05 -0.48128 -0.00019815 411.70880510187936 19.707 0.43213 19.707 19.417 19.849 0 116 59 2 0 0 0 0.66338 1 9943 9943 20.454 1.1966 1 2905700 66002 11529 43925 44922 77052 77052 -0.014679168592351743 TSGFSRAP 8 Unmodified _TSGFSRAP_ 0 0 0 ENST00000298004.9_3_9:35092613-35092670:-|nuORF ENST00000298004.9_3_9:35092613-35092670:-|nuORF ENST00000298004.9_3_9:35092613-35092670:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7087097167969 2 411.70886 821.403166 -0.46594 -0.00019183 -0.1317 -5.4223E-05 -0.59764 -0.00024606 411.70881334649323 19.606 0.24819 19.634 19.481 19.729 0.028357 43 24 2 0 0 0 0.72664 1 9840 9840 14.838 0.93222 1 1050800 66003 11529 43925 44922 77053 77053 -0.014679168592351743 TSGPFEELR 9 Unmodified _TSGPFEELR_ 0 0 0 REV__nc|ENSG00000107249|Q8NEA6|GLIS3 REV__nc|ENSG00000107249|Q8NEA6|GLIS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2566528320312 2 518.258914 1034.50327 NaN NaN NaN NaN NaN NaN NaN 15.503 1 15.503 15.003 16.003 0 0 0 0 0.79771 1 7473 7473 6.2058 0.9089 1 + 66004 18556 43926 44923 77054 77054 -0.012597243161053484 TSGPGSSSLR 10 Unmodified _TSGPGSSSLR_ 0 0 0 ENST00000404054.3_1_4:1742187-1742346:+|nuORF ENST00000404054.3_1_4:1742187-1742346:+|nuORF ENST00000404054.3_1_4:1742187-1742346:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7406005859375 2 474.740888 947.467223 -0.42969 -0.00020399 0.5596 0.00026566 0.12991 6.1675E-05 474.74104949227564 15.566 0.16637 15.566 15.531 15.697 0 74 44 2 0 0 0 0.53722 1 7515 7515 14.405 0 1 470900 66005 12910 43927 44924 77055 77055 -0.008611814929395223 TSGPRAFS 8 Unmodified _TSGPRAFS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.70849609375 2 411.70886 821.403166 -0.53626 -0.00022078 0.05498 2.2636E-05 -0.48128 -0.00019815 411.70880510187936 19.707 0.43213 19.707 19.417 19.849 0 116 59 2 0 0 0 0.42686 2 9838 9739;9838 41.84 5.7126 1 2905700 + 66006 165 43928 44925 77056;77057 77057 -0.014679168592351743 TSGPRAFS 8 Unmodified _TSGPRAFS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7087097167969 2 411.70886 821.403166 -0.46594 -0.00019183 -0.1317 -5.4223E-05 -0.59764 -0.00024606 411.70881334649323 19.606 0.24819 19.634 19.481 19.729 0.028357 43 24 2 0 0 0 0.73714 1 9941 9941 13.906 0 1 1050800 + 66007 165 43928 44925 77058 77058 -0.014679168592351743 TSGPRAFS 8 Unmodified _TSGPRAFS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7085266113281 2 411.70886 821.403166 1.3194 0.00054323 0.34404 0.00014164 1.6635 0.00068487 411.7086572693051 21.706 0.33625 18.971 18.786 19.122 -2.7348 28 18 2 0 0 0 0.38756 1 11614 11614 45.7 11.597 1 3566400 + 66008 165 43928 44925 77059 77059 -0.014679168592351743 TSGPRAFSS 9 Unmodified _TSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2247619628906 2 455.224874 908.435195 -0.068786 -3.1313E-05 -0.23266 -0.00010591 -0.30144 -0.00013722 455.22474507980803 19.79 0.49014 19.79 19.561 20.051 0 157 68 3 0 0 0 0.0093064 2 9907 9805;9907 83.429 31.16 1 4525200 + 66009 165 43929 44926 77060;77061 77061 -0.022685491760853438 TSGPRAFSS 9 Unmodified _TSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.2253112792969 2 455.224874 908.435195 -0.5696 -0.0002593 0.61444 0.00027971 0.044836 2.041E-05 455.2251591423536 19.695 0.35824 19.723 19.578 19.936 0.028357 55 25 3 0 0 0 0.062454 2 9885 9885;9987 41.956 7.5538 1 2446700 + 66010 165 43929 44926 77062;77063 77062 -0.022685491760853438 TSGPRAFSS 9 Unmodified _TSGPRAFSS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.2257995605469 2 455.224874 908.435195 0.40196 0.00018298 1.4436 0.00065715 1.8455 0.00084013 455.22568110851546 19.685 0.16881 19.693 19.61 19.779 0.0078487 14 7 3 0 0 0 0.2546 1 10041 10041 19.362 1.2156 1 465070 + 66011 165 43929 44926 77064 77064 -0.022685491760853438 TSGPRAFSSRS 11 Unmodified _TSGPRAFSSRS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8634948730469 3 384.863388 1151.56833 -0.0052889 -2.0355E-06 0.20726 7.9768E-05 0.20197 7.7732E-05 384.86344639068267 16.618 0.17807 16.623 16.515 16.693 0.0050564 20 9 3 0 0 0 0.35659 1 8342 8342 15.467 6.4903 1 1094900 + 66012 165 43930 44927 77065 77065 -0.0013872979022835352 TSGRPGVT 8 Unmodified _TSGRPGVT_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000163110|Q96HC4-7|PDLIM5;nc|ENSG00000163110|Q96HC4-4|PDLIM5;nc|ENSG00000163110|Q96HC4-6|PDLIM5;nc|ENSG00000116703|P20941-3|PDC ENSG00000163110|ENST00000317968|PDLIM5;nc|ENSG00000116703|P20941-3|PDC ENSG00000163110|ENST00000317968|PDLIM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8555603027344 2 387.70886 773.403166 NaN NaN NaN NaN NaN NaN NaN 17.379 1 17.379 16.879 17.879 0 0 0 0 0.97444 1 8557 8557 4.3292 0 1 66013 6952;16142 43931 44928 77066 77066 0.007400831407721853 TSHDVIPI 8 Unmodified _TSHDVIPI_ 0 0 0 REV__nc|ENSG00000127241|P48740|MASP1 REV__nc|ENSG00000127241|P48740|MASP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2386474609375 2 441.239993 880.465432 NaN NaN NaN NaN NaN NaN NaN 16.793 1 16.794 16.294 17.294 0.0010548 0 0 0 0.97444 1 8305 8305 0.79363 0 1 + 66014 29622 43932 44929 77067 77067 0.020418094890942484 TSHFLRHAL 9 Unmodified _TSHFLRHAL_ 0 0 0 REV__ENSG00000176900|ENST00000322049|OR51T1 REV__ENSG00000176900|ENST00000322049|OR51T1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7991333007812 2 541.298707 1080.58286 -0.44537 -0.00024108 -0.83091 -0.00044977 -1.2763 -0.00069085 541.2981008971428 15.87 0.17311 15.87 15.769 15.942 0 47 39 2 0 0 0 0.21893 1 7656 7656 0.52476 0 1 461830 + 66015 22946 43933 44930 77068 77068 0.04579387148555725 TSHHYWHIF 9 Unmodified _TSHHYWHIF_ 0 0 0 REV__ENSG00000119915|ENST00000370005|ELOVL3 REV__ENSG00000119915|ENST00000370005|ELOVL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2308959960938 2 614.28834 1226.56213 0.74098 0.00045517 0.057923 3.5581E-05 0.7989 0.00049076 614.2885031465149 49.625 0.22896 49.625 49.487 49.716 0 24 9 3 0 0 0 0.19298 1 27251 27251 4.756 0 1 5435000 + 66016 19218 43934 44931 77069 77069 -0.04209203231130232 TSIICSLNGIY 11 Unmodified _TSIICSLNGIY_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MSMS AL20221201_MKP_PDAC_01 4 395.2059631347656 3 395.205763 1182.59546 NaN NaN NaN NaN NaN NaN NaN 87.654 1 81.478 80.978 81.978 -6.1757 0 0 0 0.67092 1 57808 57808 10.315 5.5993 1 + 66017 29763 43935 44932 77070 77070 0.011466177059446636 TSILKTEFIY 10 Unmodified _TSILKTEFIY_ 0 0 0 REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF REV__ENST00000428210.5_1_2:61720980-61752425:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.8375854492188 2 607.836997 1213.65944 0.59988 0.00036463 0.0063824 3.8795E-06 0.60626 0.00036851 607.8369414922371 64.077 0.40778 63.592 63.413 63.821 -0.48512 70 20 5 0 0 0 0.34306 1 35012 35012 34.932 1.4872 1 39695000 + 66018 26935 43936 44933 77071 77071 0.0611572113452894 TSILPKLEF 9 Unmodified _TSILPKLEF_ 0 0 0 ENST00000423538.6_1_1:156182331-156182481:+|nuORF ENST00000423538.6_1_1:156182331-156182481:+|nuORF ENST00000423538.6_1_1:156182331-156182481:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.244384765625 2 524.307875 1046.6012 0.72428 0.00037974 0.0024521 1.2856E-06 0.72673 0.00038103 524.8080401607988 57.557 0.11573 57.491 57.438 57.554 -0.066036 8 5 2 0 0 0 0.21367 1 31314 31314 4.756 0 1 1467900 66019 13135 43937 44934 77072 77072 0.07976084279880524 TSIYRLFRW 9 Unmodified _TSIYRLFRW_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7979736328125 2 621.343115 1240.67168 NaN NaN NaN NaN NaN NaN NaN 95.149 1 95.149 94.649 95.649 0 0 0 0 0.85798 1 52596 52596 0.52476 0.066424 1 + 66020 17275 43938 44935 77073 77073 0.060968023882196576 TSKEKEITITK 11 Unmodified _TSKEKEITITK_ 0 0 0 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant;ENSG00000118160|ENST00000236877|SLC8A2 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.369140625 2 639.369192 1276.72383 NaN NaN NaN NaN NaN NaN NaN 19.08 1 19.088 18.588 19.588 0.0078487 0 0 0 0.9435 1 9694 9694 0 0 1 66021 3352 43939 44936 77074 77074 0.09653876220636448 TSKGSSKK 8 Unmodified _TSKGSSKK_ 0 0 0 ENSG00000176887|ENST00000322002|SOX11 ENSG00000176887|ENST00000322002|SOX11 ENSG00000176887|ENST00000322002|SOX11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.7367248535156 2 411.737617 821.460681 NaN NaN NaN NaN NaN NaN NaN 21.068 1 21.078 20.578 21.578 0.010553 0 0 0 0.97444 1 10767 10767 0 0 1 66022 8628 43940 44937 77075 77075 0.04280925346324693 TSKRDEEP 8 Unmodified _TSKRDEEP_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2331237792969 2 481.232896 960.451239 0.19634 9.4484E-05 0.90739 0.00043667 1.1037 0.00053115 481.23333692588363 47.025 0.20809 47.025 46.941 47.149 0 14 9 2 0 0 0 0.66338 1 25736 25736 20.454 1.0917 1 3325500 + 66023 19452 43941 44938 77076 77076 -0.030568877298605912 TSKRKRVKF 9 Unmodified _TSKRKRVKF_ 0 0 0 ENSG00000151952|ENST00000422113|TMEM132D;nc|ENSG00000151952|Q14C87-2|TMEM132D;ENSG00000181291|ENST00000631683|TMEM132E ENSG00000151952|ENST00000422113|TMEM132D;ENSG00000181291|ENST00000631683|TMEM132E ENSG00000181291|ENST00000631683|TMEM132E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.3626708984375 2 575.364382 1148.71421 NaN NaN NaN NaN NaN NaN NaN 69.959 1 69.959 69.459 70.459 0 0 0 0 0.85737 1 38976 38976 0.6015 0 1 66024 8963;6158 43942 44939 77077 77077 0.14580197516465887 TSKRKSLQLLT 11 Unmodified _TSKRKSLQLLT_ 0 0 0 ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13 ENSG00000204977|ENST00000378182|TRIM13 ENSG00000204977|ENST00000378182|TRIM13 MSMS AL20221201_MKP_PDAC_01 4 425.5985107421875 3 425.597871 1273.77178 NaN NaN NaN NaN NaN NaN NaN 20.403 1 17.71 17.21 18.21 -2.693 0 0 0 0.93815 1 10870 10870 3.8459 1.0026 1 66025 10341 43943 44940 77078 77078 0.1458499493137424 TSKSDLRSNDF 11 Unmodified _TSKSDLRSNDF_ 0 0 0 ENSG00000109738|ENST00000264428|GLRB ENSG00000109738|ENST00000264428|GLRB ENSG00000109738|ENST00000264428|GLRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.3074951171875 2 635.307123 1268.59969 -1.2068 -0.00076669 -0.13668 -8.6836E-05 -1.3435 -0.00085353 635.3070577880335 32.55 0.23292 32.55 32.462 32.695 0 43 13 4 0 0 0 0.53952 1 17093 17093 14.405 2.1647 1 18875000 66026 2668 43944 44941 77079 77079 -0.023862015468239406 TSKSDLRSNDF 11 Unmodified _TSKSDLRSNDF_ 0 0 0 ENSG00000109738|ENST00000264428|GLRB ENSG00000109738|ENST00000264428|GLRB ENSG00000109738|ENST00000264428|GLRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.30712890625 2 635.307123 1268.59969 -0.15946 -0.0001013 -0.12359 -7.8515E-05 -0.28304 -0.00017982 635.3070635344022 32.478 0.32445 32.508 32.319 32.643 0.029743 36 12 4 0 0 0 0.59689 1 17110 17110 11.495 1.3441 1 8610200 66027 2668 43944 44941 77080 77080 -0.023862015468239406 TSKYPSRDMYR 11 Unmodified _TSKYPSRDMYR_ 0 0 0 nc|ENSG00000150347|Q14865-2|ARID5B;ENSG00000150347|ENST00000279873|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B nc|ENSG00000150347|Q14865-2|ARID5B MSMS AL20221201_MKP_PDAC_01 4 468.5638732910156 3 468.562721 1402.66633 NaN NaN NaN NaN NaN NaN NaN 24.253 1 21.425 20.925 21.925 -2.8273 0 0 0 0.93613 1 13191 13191 4.4062 0.52982 1 66028 6052 43945 44942 77081 77081 -0.018892892565645525 TSLDVEPIYTF 11 Unmodified _TSLDVEPIYTF_ 0 0 0 nc|ENSG00000115808|O43815-2|STRN;ENSG00000115808|ENST00000263918|STRN nc|ENSG00000115808|O43815-2|STRN nc|ENSG00000115808|O43815-2|STRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.8262329101562 2 642.821544 1283.62853 4.0588 0.0026091 0.024082 1.548E-05 4.0829 0.0026246 642.8215253444159 98.625 0.15605 98.597 98.481 98.637 -0.028282 12 5 3 0 0 0 0.65108 1 54766 54766 8.7454 0.83525 1 2076900 66029 3163 43946 44943 77082 77082 -0.001934769703893835 TSLGPSKVAQ 10 Unmodified _TSLGPSKVAQ_ 0 0 0 REV__PLCE1|p.F1677S|1|0.22|ENSG00000138193|chr10:94284960-94284960|T/C|missense_variant REV__PLCE1|p.F1677S|1|0.22|ENSG00000138193|chr10:94284960-94284960|T/C|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7597961425781 2 494.277106 986.53966 0.42612 0.00021062 0.98516 0.00048694 1.4113 0.00069756 494.2776148529174 51.074 0.20023 50.66 50.538 50.738 -0.41351 14 9 2 0 0 0 0.23227 1 27496 27496 10.824 0 1 727210 + 66030 30073 43947 44944 77083 77083 0.04585152580614249 TSLIIHSLF 9 Unmodified _TSLIIHSLF_ 0 0 0 nc|ENSG00000187689|Q6UX39-2|AMTN;ENSG00000187689|ENST00000339336|AMTN nc|ENSG00000187689|Q6UX39-2|AMTN nc|ENSG00000187689|Q6UX39-2|AMTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.3195190429688 2 515.800217 1029.58588 0.35683 0.00018406 -1.4752 -0.00076091 -1.1184 -0.00057685 515.7998675906751 63.792 0.16687 63.307 63.193 63.36 -0.48516 11 7 2 0 0 0 0.20528 1 34751 34751 4.756 0 1 894680 66031 9581 43948 44945 77084 77084 0.07227217482704873 TSLLVLVPA 9 Unmodified _TSLLVLVPA_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000503042.5_1_5:1325844-1330799:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 912.573974609375 1 912.576445 911.569169 1.3066 0.0011923 -1.3652 -0.0012458 -0.058608 -5.3484E-05 912.5751569049069 70.747 0.28041 70.782 70.678 70.958 0.035507 19 12 2 0 0 0 0.078417 1 38925 38925 38.151 0 1 1774800 66032 713 43949 44946 77085 77085 0.10984716596738053 TSLLVLVPA 9 Unmodified _TSLLVLVPA_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000503042.5_1_5:1325844-1330799:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.5770263671875 1 912.576445 911.569169 0.31138 0.00028415 0.69987 0.00063868 1.0112 0.00092284 912.5768967873801 78.869 0.36584 72.693 72.564 72.93 -6.1757 31 20 2 0 0 0 0.03327 1 51630 51630 53.576 5.2297 1 6788100 66033 713 43949 44946 77086 77086 0.10984716596738053 TSLLVLVPA 9 Unmodified _TSLLVLVPA_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000503042.5_1_5:1325844-1330799:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 912.576445 911.569169 0.116 0.00010586 -0.0071632 -6.537E-06 0.10884 9.9323E-05 912.5766357106554 71.29 0.22345 70.812 70.682 70.905 -0.47736 0.015026 0.00052299 NaN 38.151 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1252400 66034 713 43949 44946 0.10984716596738053 TSLPQPELL 9 Unmodified _TSLPQPELL_ 0 0 0 ENST00000421442.2_2_3:184090707-184093318:-|nuORF ENST00000421442.2_2_3:184090707-184093318:-|nuORF ENST00000421442.2_2_3:184090707-184093318:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2804870605469 2 499.281857 996.549162 NaN NaN NaN NaN NaN NaN NaN 26.012 1 26.039 25.539 26.539 0.026951 0 0 0 0.29524 1 13482 13482 25.399 0.72543 1 66035 13108 43950 44947 77087 77087 0.050749208661500234 TSLPTSHTY 9 Unmodified _TSLPTSHTY_ 0 0 0 nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000478353.1_1_3:3215741-3221371:-|nuORF;ENST00000492178.1_1_3:3214458-3216930:-|nuORF;ENST00000498700.5_1_3:3214275-3221371:-|nuORF nc|ENSG00000113851|Q96SW2-2|CRBN nc|ENSG00000113851|Q96SW2-2|CRBN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7474975585938 2 503.745639 1005.47673 -0.30387 -0.00015307 1.9239 0.00096916 1.62 0.00081609 503.74676104192 27.799 0.20298 27.799 27.7 27.903 0 15 9 2 0 0 0 0.012148 1 14326 14326 74.423 47.539 1 2606200 66036 3008 43951 44948 77088 77088 -0.02579413207433845 TSLRPHGSL 9 Unmodified _TSLRPHGSL_ 0 0 0 REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2697143554688 2 484.269616 966.524678 -0.11338 -5.4905E-05 0.45772 0.00022166 0.34434 0.00016675 484.26971673432087 21.611 0.17757 21.639 21.535 21.713 0.028357 15 10 2 0 0 0 0.49272 1 10960 10960 7.9102 1.7044 1 911740 + 66037 20722 43952 44949 77089 77089 0.04007705503283887 TSLRPHGSL 9 Unmodified _TSLRPHGSL_ 0 0 0 REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.269775390625 2 484.269616 966.524678 0.30683 0.00014859 0.62653 0.00030341 0.93336 0.000452 484.26999664965916 24.299 0.34927 21.472 21.265 21.614 -2.8273 34 19 2 0 0 0 0.031062 2 13168 13168;13285 54.774 9.0337 1 15383000 + 66038 20722 43952 44949 77090;77091 77090 0.04007705503283887 TSLRPHGSL 9 Unmodified _TSLRPHGSL_ 0 0 0 REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.269616 966.524678 -0.11338 -5.4905E-05 0.45772 0.00022166 0.34434 0.00016675 484.26971673432087 21.611 0.17757 21.639 21.535 21.713 0.028357 0.08362 -0.00012121 NaN 54.774 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 911740 + 66039 20722 43952 44949 0.04007705503283887 TSLRWDPNL 9 Unmodified _TSLRWDPNL_ 0 0 0 REV__nc|ENSG00000151779|A2RRP1-2|NBAS REV__nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1937561035156 3 367.861096 1100.56146 0.84999 0.00031268 -1.8376 -0.00067599 -0.98762 -0.00036331 368.19361064944803 24.065 0.5242 21.238 21.073 21.597 -2.8273 37 29 2 0 0 0 0.39863 1 13089 13089 8.1555 1.5321 1 5566300 + 66040 21090 43953 44950 77092 77092 0.015199573291738488 TSLSRGGV 8 Unmodified _TSLSRGGV_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.7173461914062 2 388.716685 775.418816 NaN NaN NaN NaN NaN NaN NaN 18.323 1 18.346 17.846 18.846 0.023106 0 0 0 0.96606 1 9179 9179 7.2892 0 1 + 66041 18284 43954 44951 77093 77093 0.022123696578205454 TSLTRIVSILL 11 Unmodified _TSLTRIVSILL_ 0 0 0 REV__ENSG00000131558|ENST00000253861|EXOC4 REV__ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3839111328125 2 608.387188 1214.75982 0.65763 0.00040009 -3.8541 -0.0023448 -3.1964 -0.0019447 608.3845121346401 102.17 0.087898 95.991 95.939 96.027 -6.1757 5 3 2 0 0 0 0.42108 1 68579 68579 20.415 0 1 4384100 + 66042 19800 43955 44952 77094 77094 0.16103378188199713 TSLVCSVTLL 10 Unmodified _TSLVCSVTLL_ 0 0 0 ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX ENSG00000163964|ENST00000392391|PIGX ENSG00000163964|ENST00000392391|PIGX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2910766601562 2 518.291368 1034.56818 0.27462 0.00014233 -0.78492 -0.00040682 -0.5103 -0.00026449 518.290755250454 98.226 0.27528 98.033 97.909 98.184 -0.19321 24 9 3 0 0 0 0.60623 1 53636 53636 10.824 0.64053 1 1938900 66043 7109 43956 44953 77095 77095 0.052281341655543656 TSLVCSVTLL 10 Unmodified _TSLVCSVTLL_ 0 0 0 ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX ENSG00000163964|ENST00000392391|PIGX ENSG00000163964|ENST00000392391|PIGX MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.291368 1034.56818 0.32488 0.00016838 -1.5154 -0.00078542 -1.1905 -0.00061704 518.2907691177718 97.946 0.19489 97.946 97.843 98.037 0 -0.043316 -0.00066568 NaN 10.824 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 298200 66044 7109 43956 44953 0.052281341655543656 TSMMPLTF 8 2 Oxidation (M) _TSM(Oxidation (M))M(Oxidation (M))PLTF_ TSM(1)M(1)PLTF TSM(50)M(50)PLTF 0 0 2 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2146606445312 2 480.214272 958.41399 -0.17947 -8.6184E-05 0.50305 0.00024157 0.32358 0.00015539 480.214402837041 24.274 0.49526 24.274 23.995 24.49 0 85 28 4 0 0 0 0.35156 1 12297 12297 49.669 13.163 1 10657000 + 66045 22776 43957 44954 77096 77096 1851;1852 -0.06688018591489708 TSNGSVLVY 9 Unmodified _TSNGSVLVY_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 939.4761962890625 1 939.478188 938.470912 -0.045533 -4.2777E-05 -0.26266 -0.00024677 -0.3082 -0.00028954 939.4779526533397 47.027 0.33195 47.027 46.839 47.171 0 37 15 3 0 0 0 0.009483 2 25674 25674;25786 81.89 37.483 1 14946000 66046 3488 43958 44955 77097;77098 77097 -0.0007851171908441756 TSNGSVLVY 9 Unmodified _TSNGSVLVY_ 0 0 0 ENSG00000120008|ENST00000263461|WDR11;ENST00000497136.6_1_10:122626245-122665534:+|nuORF ENSG00000120008|ENST00000263461|WDR11 ENSG00000120008|ENST00000263461|WDR11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.47900390625 1 939.478188 938.470912 0.93697 0.00088026 -0.25658 -0.00024105 0.68039 0.00063921 939.477884077686 54.115 0.5093 48.25 47.991 48.5 -5.8653 58 29 3 0 0 0 0.009483 3 34300 34166;34300;34432 81.89 37.483 1 33510000 66047 3488 43958 44955 77099;77100;77101 77100 -0.0007851171908441756 TSNNRNTNQS 10 Unmodified _TSNNRNTNQS_ 0 0 0 REV__ENSG00000165379|ENST00000298119|LRFN5 REV__ENSG00000165379|ENST00000298119|LRFN5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2579345703125 2 568.257965 1134.50138 NaN NaN NaN NaN NaN NaN NaN 2.3968 1 2.3798 1.8798 2.8798 -0.017019 0 0 0 1.0061 1 1223 1223 0 0 1 + 66048 22007 43959 44956 77102 77102 -0.06049385072014957 TSNPENTVF 9 Unmodified _TSNPENTVF_ 0 0 0 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 ENSG00000044574|ENST00000324460|HSPA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7340393066406 2 504.735271 1007.45599 0.55583 0.00028055 -3.242 -0.0016364 -2.6862 -0.0013558 504.73310360144046 42.182 0.40858 42.182 41.992 42.401 0 28 20 2 0 0 0 0.039985 1 22854 22854 49.933 21.446 1 4850600 66049 673 43960 44957 77103 77103 -0.04744003587074985 TSNTSLLY 8 Unmodified _TSNTSLLY_ 0 0 0 ENST00000604263.1_1_7:72233822-72234023:+|nuORF ENST00000604263.1_1_7:72233822-72234023:+|nuORF ENST00000604263.1_1_7:72233822-72234023:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 898.4547119140625 1 898.451639 897.444362 0.092784 8.3362E-05 -0.78105 -0.00070174 -0.68827 -0.00061838 898.4510110016033 48.138 0.31508 48.138 47.936 48.251 0 27 15 3 0 0 0 0.60622 1 26311 26311 25.399 3.6527 1 4404600 66050 15839 43961 44958 77104 77104 -0.008462006104309694 TSPKETPM 8 Unmodified _TSPKETPM_ 0 0 0 ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|179|57.35|0.0|22.45|+|ENST00000643617|CCDC9,CCDC9 ENSG00000105321|ENST00000221922|CCDC9 ENSG00000105321|ENST00000221922|CCDC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.4279174804688 1 890.428795 889.421518 -0.30224 -0.00026912 -2.7721 -0.0024684 -3.0744 -0.0027375 890.4256197196362 51.954 0.23683 51.954 51.842 52.079 0 25 10 3 0 0 0 0.80676 1 28802 28802 2.5775 0 1 3800100 66051 98 43962 44959 77105 77105 -0.027615429995421437 TSPLCCFLT 9 Unmodified _TSPLCCFLT_ 0 0 0 REV__ENSG00000178828|ENST00000375121|RNF186 REV__ENSG00000178828|ENST00000375121|RNF186 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.2255859375 1 984.452901 983.445625 0.31414 0.00030926 -0.17628 -0.00017354 0.13786 0.00013572 984.453179591887 92.755 0.24707 92.298 92.129 92.376 -0.4574 22 10 3 0 0 0 0.59218 1 50695 50695 1.8442 0 1 1173600 + 66052 23068 43963 44960 77106 77106 -0.046760258375343255 TSPLFLNHAGL 11 Unmodified _TSPLFLNHAGL_ 0 0 0 ENSG00000028277|ENST00000692977|POU2F2 ENSG00000028277|ENST00000692977|POU2F2 ENSG00000028277|ENST00000692977|POU2F2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3192138671875 2 585.319306 1168.62406 0.21896 0.00012816 0.15809 9.2536E-05 0.37705 0.0002207 585.3194686665133 59.662 0.32637 59.171 58.946 59.272 -0.4908 29 15 3 0 0 0 0.13715 1 32427 32427 38.176 13.185 1 2654600 66053 572 43964 44961 77107 77107 0.04649103397377985 TSPMNIDRN 9 Unmodified _TSPMNIDRN_ 0 0 0 ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-3|EHMT1 ENSG00000181090|ENST00000460843|EHMT1 ENSG00000181090|ENST00000460843|EHMT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2097778320312 2 524.248023 1046.48149 -0.31727 -0.00016633 0.80906 0.00042415 0.49178 0.00025782 524.248079541338 27.821 0.2653 27.821 27.659 27.924 0 20 12 2 0 0 0 0.18521 1 14354 14354 16.942 0 1 2540300 66054 8951 43965 44962 77108 77108 -0.039888523363288186 TSPPGPTTY 9 Unmodified _TSPPGPTTY_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.4385375976562 1 920.435989 919.428712 0.65526 0.00060313 1.4249 0.0013115 2.0801 0.0019146 920.4373082986878 64.97 0.35567 58.794 58.644 59 -6.1757 28 19 2 0 0 0 0.23158 1 42089 42089 20.454 0 1 7730900 + 66055 21279 43966 44963 77109 77109 -0.03422487127488694 TSPSPHVP 8 Unmodified _TSPSPHVP_ 0 0 0 REV__ENST00000374049.4_2_9:117386638-117389236:+|nuORF REV__ENST00000374049.4_2_9:117386638-117389236:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7098999023438 2 411.211235 820.407917 -0.16467 -6.7714E-05 -1.6361 -0.00067279 -1.8008 -0.0007405 411.21152930151106 22.021 0.26894 22.044 21.895 22.164 0.022896 18 11 2 0 0 0 0.72953 1 11181 11181 14.582 4.3983 1 359420 + 66056 26170 43967 44964 77110 77110 -0.009470327164763148 TSQDSTLKMF 10 Unmodified _TSQDSTLKMF_ 0 0 0 ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000519166.5_1_8:59502540-59506857:-|nuORF;ENST00000524148.5_1_8:59502540-59507328:-|nuORF ENSG00000035681|ENST00000038176|NSMAF ENSG00000035681|ENST00000038176|NSMAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2800903320312 2 579.278989 1156.54342 0.35444 0.00020532 1.6677 0.00096607 2.0222 0.0011714 579.2793074493687 59.682 0.26508 59.191 59.048 59.313 -0.49079 22 12 3 0 0 0 0.6966 1 32479 32479 3.2813 0.70383 1 2841600 66057 616 43968 44965 77111 77111 -0.028585457078406762 TSQDTFSRD 9 Unmodified _TSQDTFSRD_ 0 0 0 REV__nc|ENSG00000060656|Q92729|PTPRU REV__nc|ENSG00000060656|Q92729|PTPRU MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8253784179688 3 352.824599 1055.45197 1.5572 0.00054942 0.48263 0.00017028 2.0398 0.0007197 352.8249129409887 91.109 0.72256 84.933 84.608 85.331 -6.1757 51 41 2 0 0 0 0.25681 1 60218 60218 13.615 3.2996 1 8721500 + 66058 29497 43969 44966 77112 77112 -0.07354093080789426 TSQIGNSSVQY 11 Unmodified _TSQIGNSSVQY_ 0 0 0 REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2 REV__nc|ENSG00000157107|Q0JRZ9-3|FCHO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.280517578125 2 592.283117 1182.55168 0.22943 0.00013589 -1.9398 -0.0011489 -1.7104 -0.001013 592.7831718371348 51.909 0.64111 46.175 45.812 46.453 -5.7345 129 42 4 0 0 0 0.33405 2 32519 32519;32645 24.991 0 1 173770000 + 66059 21363 43970 44967 77113;77114 77113 -0.03229275466856052 TSQRIFITY 9 Unmodified _TSQRIFITY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8073120117188 2 564.806031 1127.59751 0.54208 0.00030617 0.34908 0.00019716 0.89116 0.00050333 564.8062425902853 51.886 0.33145 51.827 51.651 51.983 -0.058918 45 15 4 0 0 0 0.024189 1 28074 28074 59.368 31.74 1 11376000 66060 4903 43971 44968 77115 77115 0.038814145060541705 TSQRIFITY 9 Unmodified _TSQRIFITY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 564.806031 1127.59751 0.75809 0.00042818 -0.39218 -0.00022151 0.36591 0.00020667 564.80566051118 52.223 0.22192 51.789 51.669 51.891 -0.43367 0.10752 -0.0001725 NaN 59.368 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2184800 66061 4903 43971 44968 0.038814145060541705 TSQRIFITY 9 Unmodified _TSQRIFITY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 564.806031 1127.59751 1.1681 0.00065974 -0.82473 -0.00046581 0.34335 0.00019393 564.8054792671803 57.457 0.39961 51.429 51.219 51.619 -6.0275 -0.25271 -0.00066111 NaN 59.368 42 20 3 NaN NaN NaN NaN 0 NaN NaN 0 26708000 66062 4903 43971 44968 0.038814145060541705 TSQRKYNP 8 Unmodified _TSQRKYNP_ 0 0 0 REV__ENST00000520834.1_1_8:65489507-65489756:-|nuORF REV__ENST00000520834.1_1_8:65489507-65489756:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7873840332031 2 497.259248 992.503943 -0.28154 -0.00014 1.245 0.00061909 0.96347 0.00047909 497.2588442219647 34.462 0.2192 34.271 34.152 34.371 -0.19131 14 9 2 0 0 0 8.7369 1 17997 17997 18.135 1.1927 1 2924700 + 66063 28285 43972 44969 77116 77116 0.007391151236106452 TSQRVVDVI 9 Unmodified _TSQRVVDVI_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2554321289062 2 508.790381 1015.56621 -0.20625 -0.00010494 1.0718 0.0005453 0.86551 0.00044036 508.7906162311647 28.913 0.14276 28.913 28.82 28.963 0 9 6 2 0 0 0 0.19891 1 14970 14970 1.6526 0 1 647280 66064 8777 43973 44970 77117 77117 0.059048414719427456 TSQSKLTKVK 10 Unmodified _TSQSKLTKVK_ 0 0 0 REV__JUND|p.N307S|1|0.2|ENSG00000130522|chr19:18280565-18280565|T/C|missense_variant REV__JUND|p.N307S|1|0.2|ENSG00000130522|chr19:18280565-18280565|T/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8965148925781 3 373.895917 1118.66592 2.0297 0.00075888 -1.4715 -0.00055019 0.55816 0.0002087 373.89526650205 94.862 0.7343 94.876 94.568 95.302 0.014244 82 27 4 0 0 0 0.72247 1 52839 52839 0.13989 0.056541 1 44587000 + 66065 29395 43974 44971 77118 77118 0.11133659085885483 TSQVYLIVQ 9 Unmodified _TSQVYLIVQ_ 0 0 0 ENSG00000185565|ENST00000490035|LSAMP ENSG00000185565|ENST00000490035|LSAMP ENSG00000185565|ENST00000490035|LSAMP MSMS AL20221201_MKP_PDAC_01 4 525.7972412109375 2 525.795132 1049.57571 NaN NaN NaN NaN NaN NaN NaN 24.774 1 21.89 21.39 22.39 -2.8831 0 0 0 0.76439 1 13509 13509 7.2892 1.0834 1 66066 9383 43975 44972 77119 77119 0.05290609757457787 TSQYFLWYLCL 11 Unmodified _TSQYFLWYLCL_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.5699157714844 3 479.568813 1435.68461 NaN NaN NaN NaN NaN NaN NaN 16.411 1 16.411 15.911 16.911 0 0 0 0 0.94301 1 7999 7999 0.094841 0 1 66067 5488 43976 44973 77120 77120 -0.01580547334538096 TSRALIVHI 9 Unmodified _TSRALIVHI_ 0 0 0 REV__ENSG00000141179|ENST00000268896|PCTP REV__ENSG00000141179|ENST00000268896|PCTP MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3114624023438 2 505.311284 1008.60801 0.91154 0.00046061 -0.034187 -1.7275E-05 0.87735 0.00044334 505.3112809575033 49.754 0.42271 44.215 44.017 44.439 -5.5391 61 26 3 0 0 0 0.05447 1 31039 31039 43.858 0 1 75507000 + 66068 20520 43977 44974 77121 77121 0.1040544195111579 TSRIITESF 9 Unmodified _TSRIITESF_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7598876953125 2 527.282389 1052.55022 0.68903 0.00036331 1.286 0.00067808 1.975 0.0010414 527.2827283034037 39.008 0.27396 39.008 38.88 39.154 0 18 12 2 0 0 0 0.19613 1 20963 20963 7.9102 0.62092 1 1674600 66069 637 43978 44975 77122 77122 0.026051352350577872 TSRLKASLT 9 Unmodified _TSRLKASLT_ 0 0 0 ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE ENSG00000179270|ENST00000331664|PCARE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2898254394531 2 488.792924 975.571294 -0.35255 -0.00017232 -1.2564 -0.00061412 -1.6089 -0.00078644 488.79228902298826 103.44 0.068512 103.39 103.34 103.4 -0.047928 4 2 2 0 0 0 0.2191 1 57449 57449 0 0 1 16419000 66070 8822 43979 44976 77123 77123 0.08253145334538203 TSRPGFPPL 9 Unmodified _TSRPGFPPL_ 0 0 0 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 MSMS AL20221201_MKP_PDAC_01 4 486.2684936523438 2 486.269084 970.523616 NaN NaN NaN NaN NaN NaN NaN 39.946 1 35.417 34.917 35.917 -4.5294 0 0 0 0.6306 1 23782 23782 11.64 1.5664 1 66071 16425 43980 44977 77124 77124 0.0371749113437545 TSRSWYNF 8 Unmodified _TSRSWYNF_ 0 0 0 ENST00000446284.5_3_9:115933982-115935770:-|nuORF ENST00000446284.5_3_9:115933982-115935770:-|nuORF ENST00000446284.5_3_9:115933982-115935770:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.826171875 3 354.166408 1059.47739 NaN NaN NaN NaN NaN NaN NaN 70.922 1 70.922 70.422 71.422 0 0 0 0 0.97444 1 39514 39514 3.9444 0 1 66072 13463 43981 44978 77125 77125 -0.04996573767743939 TSRTDREI 8 Unmodified _TSRTDREI_ 0 0 0 ENST00000551706.1_1_12:58144639-58145133:-|nuORF;ENSG00000135446|ENST00000257904|CDK4 ENST00000551706.1_1_12:58144639-58145133:-|nuORF ENST00000551706.1_1_12:58144639-58145133:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2553405761719 2 489.254163 976.493772 0.39285 0.0001922 2.5555 0.0012503 2.9484 0.0014425 489.2550331751804 36.324 0.13539 32.132 32.067 32.202 -4.1928 9 7 2 0 0 0 0.68937 1 21228 21228 18.146 0 1 12879000 66073 4707 43982 44979 77126 77126 0.004585073983776056 TSRVFNGE 8 Unmodified _TSRVFNGE_ 0 0 0 nc|ENSG00000109685|O96028-3|NSD2;nc|ENSG00000109685|O96028-7|NSD2;nc|ENSG00000109685|O96028-6|NSD2;ENST00000508355.5_1_4:1902372-1920392:+|nuORF;nc|ENSG00000109685|O96028-5|NSD2;ENSG00000109685|ENST00000508803|NSD2 nc|ENSG00000109685|O96028-3|NSD2;ENSG00000109685|ENST00000508803|NSD2 nc|ENSG00000109685|O96028-3|NSD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2254943847656 2 455.224874 908.435195 1.0075 0.00045862 0.3078 0.00014012 1.3153 0.00059874 455.2249656380314 21.955 0.45179 19.22 19.054 19.505 -2.7348 44 25 2 0 0 0 0.46677 1 11773 11773 37.974 1.4678 1 3403100 66074 16112;2665 43983 44980 77127 77127 -0.022685491760853438 TSRWRDLE 8 Unmodified _TSRWRDLE_ 0 0 0 nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B nc|ENSG00000135436|Q8IYM0-2|FAM186B nc|ENSG00000135436|Q8IYM0-2|FAM186B MSMS AL20221201_MKP_PDAC_01 4 531.769287109375 2 531.76998 1061.52541 NaN NaN NaN NaN NaN NaN NaN 20.142 1 17.485 16.985 17.985 -2.6564 0 0 0 0.94061 1 10715 10715 12.532 1.7076 1 66075 4705 43984 44981 77128 77128 -0.0028949984766768466 TSSATFWSS 9 Unmodified _TSSATFWSS_ 0 0 0 REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2160949707031 2 487.216714 972.418876 -0.26373 -0.00012849 0.58409 0.00028458 0.32036 0.00015608 487.2168640786069 20.635 0.3714 20.635 20.449 20.82 0 52 30 2 0 0 0 0.54444 1 10411 10411 4.756 0 1 978320 + 66076 27859 43985 44982 77129 77129 -0.06843675132859062 TSSGASFTY 9 Unmodified _TSSGASFTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.4000244140625 1 920.399603 919.392327 0.195 0.00017948 0.48902 0.0004501 0.68403 0.00062958 920.3999537804956 38.018 0.37735 38.018 37.826 38.204 0 57 18 4 0 0 0 0.0090851 2 20202 20202;20311 85.357 40.95 1 46597000 66077 8367 43986 44983 77130;77131 77130 -0.07059364024189563 TSSGASFTY 9 Unmodified _TSSGASFTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7038269042969 2 460.70344 919.392327 0.6051 0.00027877 0.22179 0.00010218 0.82689 0.00038095 460.7034909234894 38.018 0.30209 38.018 37.846 38.148 0 42 14 4 0 0 0 0.023164 1 20223 20223 60.39 30.165 1 13448000 66078 8367 43986 44983 77132 77132 -0.07059364024189563 TSSGASFTY 9 Unmodified _TSSGASFTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.3995971679688 1 920.399603 919.392327 0.38908 0.0003581 0.28362 0.00026105 0.6727 0.00061915 920.3997211024772 43.977 0.55211 39.212 38.919 39.471 -4.7648 109 35 4 0 0 0 0.0090851 3 26885 26607;26748;26885 85.357 45.399 1 153570000 66079 8367 43986 44983 77133;77134;77135 77135 -0.07059364024189563 TSSGASFTY 9 Unmodified _TSSGASFTY_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7037353515625 2 460.70344 919.392327 0.5728 0.00026389 0.23824 0.00010976 0.81104 0.00037365 460.7035603233659 44.014 0.47985 39.249 38.95 39.43 -4.7648 75 30 3 0 0 0 0.052168 2 26653 26653;26782 44.407 21.259 1 68004000 66080 8367 43986 44983 77136;77137 77136 -0.07059364024189563 TSSGSDLH 8 Unmodified _TSSGSDLH_ 0 0 0 REV__NR4A1|p.P377S|1|0.14|ENSG00000123358|chr12:52056616-52056616|C/T|missense_variant REV__NR4A1|p.P377S|1|0.14|ENSG00000123358|chr12:52056616-52056616|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1802673339844 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 0.76211 1 0.68882 0.18882 1.1888 -0.073289 0 0 0 0.97444 1 380 380 0.69038 0 1 + 66081 30060 43987 44984 77138 77138 -0.06336803855481321 TSSGSNSN 8 Unmodified _TSSGSNSN_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL;ENSG00000073910|ENST00000542859|FRY ENSG00000075539|ENST00000358350|FRYL;ENSG00000073910|ENST00000542859|FRY ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 753.3020629882812 1 753.300952 752.293675 1.5804 0.0011905 -0.88547 -0.00066702 0.69489 0.00052346 753.3003294491011 108.3 0.48952 102.12 101.96 102.45 -6.1757 114 87 2 0 0 0 0.81107 1 72322 72322 0 0 1 2778500 66082 1160;1116 43988 44985 77139 77139 -0.0923796726923456 TSSNQQKNFK 10 Unmodified _TSSNQQKNFK_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.30078125 2 591.299101 1180.58365 -0.17652 -0.00010438 -1.3197 -0.00078037 -1.4963 -0.00088474 591.2983762573629 35.764 0.20596 35.789 35.702 35.907 0.024971 16 9 2 0 0 0 0.29752 1 18912 18912 27.629 1.3607 1 3546500 66083 16152 43989 44986 77140 77140 0.0005813700693124702 TSSPKSRGESS 11 Unmodified _TSSPKSRGESS_ 0 0 0 REV__ENSG00000277556|ENST00000374779|OR13C5 REV__ENSG00000277556|ENST00000374779|OR13C5 MSMS AL20221201_MKP_PDAC_01 4 561.7723388671875 2 561.772916 1121.53128 NaN NaN NaN NaN NaN NaN NaN 16.832 1 14.275 13.775 14.775 -2.557 0 0 0 0.66488 1 8751 8751 18.373 1.2602 1 + 66084 24666 43990 44987 77141 77141 -0.0246244612665123 TSSRRLWDL 9 Unmodified _TSSRRLWDL_ 0 0 0 ENST00000540817.1_1_2:44571042-44588692:-|nuORF ENST00000540817.1_1_2:44571042-44588692:-|nuORF ENST00000540817.1_1_2:44571042-44588692:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.5424194335938 3 378.540245 1132.59891 NaN NaN NaN NaN NaN NaN NaN 69.687 1 63.511 63.011 64.011 -6.1757 0 0 0 0.6557 1 45516 45516 7.1017 0.90987 1 66085 15037 43991 44988 77142 77142 0.03791048594803215 TSSSGGYD 8 Unmodified _TSSSGGYD_ 0 0 0 REV__ENSG00000134830|ENST00000595464|C5AR2 REV__ENSG00000134830|ENST00000595464|C5AR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5171508789062 2 387.15104 772.287527 NaN NaN NaN NaN NaN NaN NaN 16.209 1 16.21 15.71 16.71 0.0010548 0 0 0 0.97444 1 7987 7987 0.69038 0 1 + 66086 20017 43992 44989 77143 77143 -0.10772485500763196 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN ENST00000563753.1_1_15:73884305-73925556:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7362060546875 2 498.735271 995.45599 -0.11656 -5.8135E-05 1.2703 0.00063356 1.1538 0.00057543 498.7358225278099 23.979 0.34339 23.979 23.735 24.078 0 27 16 2 0 0 0 0.2143 2 12279 12175;12279 21.747 8.2388 1 1674400 66087 6471 43993 44990 77144;77145 77145 -0.041920035870930406 TSSSHTLTY 9 Unmodified _TSSSHTLTY_ 0 0 0 ENST00000563753.1_1_15:73884305-73925556:-|nuORF;nc|ENSG00000156642|Q9Y639-3|NPTN;nc|ENSG00000156642|Q9Y639-1|NPTN;nc|ENSG00000156642|Q9Y639-4|NPTN;nc|ENSG00000156642|Q9Y639-5|NPTN;ENSG00000156642|ENST00000345330|NPTN ENST00000563753.1_1_15:73884305-73925556:-|nuORF ENST00000563753.1_1_15:73884305-73925556:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.7359924316406 2 498.735271 995.45599 0.6392 0.00031879 0.43385 0.00021638 1.0731 0.00053517 498.73516976955824 26.636 0.29905 23.685 23.542 23.841 -2.9511 21 15 2 0 0 0 0.00032477 1 14680 14680 147.83 47.46 1 7285500 66088 6471 43993 44990 77146 77146 -0.041920035870930406 TSSSRSSSRSS 11 Unmodified _TSSSRSSSRSS_ 0 0 0 nc|ENSG00000104859|Q8N2M8-3|CLASRP;nc|ENSG00000104859|Q8N2M8-4|CLASRP;ENSG00000104859|ENST00000221455|CLASRP nc|ENSG00000104859|Q8N2M8-3|CLASRP nc|ENSG00000104859|Q8N2M8-3|CLASRP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7654418945312 2 564.765623 1127.51669 NaN NaN NaN NaN NaN NaN NaN 16.392 1 16.392 15.892 16.892 0 0 0 0 0.9435 1 7989 7989 0 0 1 66089 2244 43994 44991 77147 77147 -0.04196518274807204 TSSTTLSY 8 Unmodified _TSSTTLSY_ 0 0 0 REV__ENSG00000172476|ENST00000304236|RAB40A REV__ENSG00000172476|ENST00000304236|RAB40A MSMS AL20221201_MKP_PDAC_01 4 430.2068176269531 2 430.205815 858.397078 NaN NaN NaN NaN NaN NaN NaN 44.557 1 39.705 39.205 40.205 -4.852 0 0 0 0.95607 1 27217 27217 9.3474 6.4582 1 + 66090 18223 43995 44992 77148 77148 -0.037784798814186615 TSSWQKSRTT 10 Unmodified _TSSWQKSRTT_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.2998046875 2 591.299101 1180.58365 0.42798 0.00025306 0.73487 0.00043453 1.1629 0.00068759 591.2991817586828 40.476 0.47705 35.947 35.718 36.195 -4.5294 74 29 4 0 0 0 0.077785 1 24102 24102 51.63 5.8899 1 28013000 66091 10523 43996 44993 77149 77149 0.0005813700695398438 TSTFYLFL 8 Unmodified _TSTFYLFL_ 0 0 0 REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2644348144531 2 496.260394 990.506234 1.0168 0.00050461 2.7595 0.0013694 3.7763 0.001874 496.2609191895249 60.374 1.1403 54.26 53.337 54.478 -6.1147 82 61 2 0 0 0 0.50586 1 38840 38840 34.187 1.8818 1 49067000 + 66092 30030 43997 44994 77150 77150 0.010601508087120237 TSTHRERLA 9 Unmodified _TSTHRERLA_ 0 0 0 REV__nc|ENSG00000169641|Q86V48-2|LUZP1 REV__nc|ENSG00000169641|Q86V48-2|LUZP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.271240234375 2 535.788704 1069.56285 0.27418 0.00014691 -0.85557 -0.00045841 -0.58139 -0.0003115 535.7879160647287 78.312 0.47958 78.312 78.03 78.509 0 41 21 3 0 0 0 0.20528 1 43456 43456 0.52476 0 1 1167300 + 66093 22412 43998 44995 77151 77151 0.03085591417948308 TSTIDQPCI 9 Unmodified _TSTIDQPCI_ 0 0 0 REV__ENSG00000083168|ENST00000265713|KAT6A REV__ENSG00000083168|ENST00000265713|KAT6A MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2357482910156 2 489.23405 976.453547 0.63803 0.00031215 0.65054 0.00031827 1.2886 0.00063041 489.2339770214824 40.507 0.27364 35.977 35.889 36.163 -4.5294 22 16 2 0 0 0 0.2143 1 24181 24181 21.747 3.6003 1 8966700 + 66094 17714 43999 44996 77152 77152 -0.035621753164150505 TSTKGKKKKL 10 Unmodified _TSTKGKKKKL_ 0 0 0 REV__nc|ENSG00000075292|Q14966-3|ZNF638 REV__nc|ENSG00000075292|Q14966-3|ZNF638 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3665771484375 2 559.866423 1117.71829 1.7517 0.0009807 -0.61548 -0.00034459 1.1362 0.00063611 559.866308353814 103.17 0.11959 96.996 96.949 97.069 -6.1757 64 35 2 0 0 0 0.72607 1 69188 69188 0 0 1 7716900 + 66095 17566 44000 44997 77153 77153 0.1641424221950274 TSTKIIHLY 9 Unmodified _TSTKIIHLY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.2088928222656 3 359.209725 1074.60735 1.7427 0.00062599 -1.3086 -0.00047007 0.43408 0.00015592 359.20926037863927 42.569 0.32374 37.884 37.732 38.055 -4.6846 26 21 2 0 0 0 0.10925 1 25697 25697 36.127 31.23 1 12033000 66096 10367 44001 44998 77154 77154 0.07302602511435907 TSTKIIHLY 9 Unmodified _TSTKIIHLY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 359.209725 1074.60735 -0.014102 -5.0657E-06 0.1865 6.6992E-05 0.1724 6.1926E-05 359.54393649621744 38.504 0.16825 38.217 38.071 38.239 -0.28687 0.16641 0.00092358 NaN 36.127 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1914600 66097 10367 44001 44998 0.07302602511435907 TSTRKLSRRLW 11 Unmodified _TSTRKLSRRLW_ 0 0 0 ENST00000381496.7_1_10:468766-532425:-|nuORF ENST00000381496.7_1_10:468766-532425:-|nuORF ENST00000381496.7_1_10:468766-532425:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.6133728027344 3 468.612515 1402.81572 1.0954 0.0005133 -0.69442 -0.00032542 0.40094 0.00018789 468.61222092787375 20.612 0.23178 17.919 17.82 18.052 -2.693 24 14 2 0 0 0 0.72311 1 10970 10970 2.084 0.75432 1 2453500 66098 12621 44002 44999 77155 77155 0.13042024148376186 TSTSWVLAMYF 11 Unmodified _TSTSWVLAMYF_ 0 0 0 REV__ENST00000538878.5_1_Y:15522901-15560940:-|nuORF REV__ENST00000538878.5_1_Y:15522901-15560940:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.3111572265625 2 653.312832 1304.61111 NaN NaN NaN NaN NaN NaN NaN 31.301 1 31.331 30.831 31.831 0.030106 0 0 0 0.93893 1 16392 16392 3.2813 0.28607 1 + 66099 28562 44003 45000 77156 77156 -0.029010957770424284 TSVCRFQTPG 10 Unmodified _TSVCRFQTPG_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7373657226562 2 548.266216 1094.51788 0.81017 0.00044419 -0.29281 -0.00016054 0.51736 0.00028365 548.2658225029268 39.389 0.40297 34.938 34.72 35.123 -4.4509 48 24 3 0 0 0 0.23325 1 23246 23246 10.074 2.1638 1 17316000 + 66100 20594 44004 45001 77157 77157 -0.025599754396125718 TSVGKKKKK 9 Unmodified _TSVGKKKKK_ 0 0 0 REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF REV__ENST00000565844.1_1_16:19721758-19726357:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 502.33447265625 2 502.334759 1002.65496 NaN NaN NaN NaN NaN NaN NaN 107.64 1 101.46 100.96 101.96 -6.1757 0 0 0 0.8622 1 71980 71980 0 0 1 + 66101 18317 44005 45002 77158 77158 0.15374301502265553 TSVTNFNYR 9 Unmodified _TSVTNFNYR_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.84912109375 3 367.848967 1100.52507 -0.36583 -0.00013457 -0.20479 -7.5334E-05 -0.57062 -0.0002099 367.8490470610053 21.999 0.24245 21.999 21.901 22.143 0 29 21 2 0 0 0 0.58865 1 11140 11140 1.0715 0 1 1220700 66102 7103 44006 45003 77159 77159 -0.021169195675156516 TSWRDGMAF 9 Oxidation (M) _TSWRDGM(Oxidation (M))AF_ TSWRDGM(1)AF TSWRDGM(50)AF 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7365112304688 2 543.737291 1085.46003 -0.19831 -0.00010783 1.5169 0.00082478 1.3186 0.00071696 543.7379752814282 38.163 0.25727 37.891 37.761 38.018 -0.27133 21 11 2 0 0 0 0.040733 1 20058 20058 49.527 30.27 1 5496400 66103 3108 44007 45004 77160 77160 545 -0.07928237365035784 TSWRDGMAF 9 Oxidation (M) _TSWRDGM(Oxidation (M))AF_ TSWRDGM(1)AF TSWRDGM(57)AF 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.737060546875 2 543.737291 1085.46003 0.80239 0.00043629 -0.89577 -0.00048707 -0.093384 -5.0776E-05 543.7369091133523 42.472 0.32725 37.787 37.575 37.902 -4.6846 40 21 3 0 0 0 0.026499 1 25677 25677 57.249 37.992 1 17685000 66104 3108 44007 45004 77161 77161 545 -0.07928237365035784 TSWRDGMAF 9 Oxidation (M) _TSWRDGM(Oxidation (M))AF_ TSWRDGM(1)AF TSWRDGM(50)AF 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.238525390625 2 543.737291 1085.46003 0.98653 0.00053641 -0.80209 -0.00043612 0.18444 0.00010029 543.7370598722766 42.673 0.3312 37.989 37.832 38.163 -4.6846 42 21 3 0 0 0 0.040733 1 25806 25806 49.527 30.27 1 17826000 66105 3108 44007 45004 77162 77162 545 -0.07928237365035784 TSWRDGMAF 9 Oxidation (M) _TSWRDGM(Oxidation (M))AF_ 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 543.737291 1085.46003 0.16491 8.9666E-05 0.46458 0.00025261 0.62949 0.00034227 543.7374928050663 37.826 0.30779 37.826 37.68 37.988 0 -0.0089797 9.7519E-05 NaN 57.249 25 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2025800 66106 3108 44007 45004 545 -0.07928237365035784 TSWSALLDSF 10 Unmodified _TSWSALLDSF_ 0 0 0 REV__ENSG00000284395|ENST00000640283|PERCC1 REV__ENSG00000284395|ENST00000640283|PERCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.77392578125 2 563.774396 1125.53424 0.6363 0.00035873 -0.40555 -0.00022864 0.23076 0.00013009 563.7738988095634 88.317 0.26345 87.813 87.649 87.912 -0.50423 21 11 2 0 0 0 0.66569 1 48272 48272 6.7232 0.96273 1 711500 + 66107 24697 44008 45005 77163 77163 -0.02350571001852586 TSWSALLDSF 10 Unmodified _TSWSALLDSF_ 0 0 0 REV__ENSG00000284395|ENST00000640283|PERCC1 REV__ENSG00000284395|ENST00000640283|PERCC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.774396 1125.53424 0.6363 0.00035873 -0.40555 -0.00022864 0.23076 0.00013009 563.7738988095634 88.317 0.26345 87.813 87.649 87.912 -0.50423 0 0 NaN 6.7232 21 11 2 NaN NaN NaN NaN 0 NaN NaN 0 711500 + 66108 24697 44008 45005 -0.02350571001852586 TSYKDAYI 8 Unmodified _TSYKDAYI_ 0 0 0 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1;ENST00000497873.1_1_21:34107263-34123563:-|nuORF nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7377624511719 2 480.737283 959.460012 NaN NaN NaN NaN NaN NaN NaN 52.946 1 52.946 52.446 53.446 0 0 0 0 0.97444 1 29319 29319 4.756 0 1 66109 6625 44009 45006 77164 77164 -0.021339140933832823 TSYLLLLA 8 Unmodified _TSYLLLLA_ 0 0 0 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 ENSG00000173080|ENST00000368318|RXFP4 MSMS AL20221201_MKP_PDAC_01 4 447.2730712890625 2 447.270761 892.52697 NaN NaN NaN NaN NaN NaN NaN 105.77 1 99.592 99.092 100.09 -6.1757 0 0 0 0.97444 1 70845 70845 0.79363 0 1 66110 8285 44010 45007 77165 77165 0.0764074118839062 TSYQAPKH 8 Unmodified _TSYQAPKH_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000514212.5_1_5:148617016-148622118:+|nuORF ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2353515625 2 466.235242 930.45593 -0.14756 -6.8799E-05 1.3599 0.00063404 1.2124 0.00056525 466.2358525334563 51.392 0.47277 51.338 51.007 51.479 -0.053871 32 23 2 0 0 0 0.80143 1 27787 27787 5.7604 0 1 2140800 66111 8298 44011 45008 77166 77166 -0.012079587964308303 TSYQAPKHF 9 Unmodified _TSYQAPKHF_ 0 0 0 ENSG00000173210|ENST00000309868|ABLIM3;ENST00000514212.5_1_5:148617016-148622118:+|nuORF ENSG00000173210|ENST00000309868|ABLIM3 ENSG00000173210|ENST00000309868|ABLIM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2930297851562 2 539.769448 1077.52434 0.25693 0.00013868 -1.6473 -0.00088918 -1.3904 -0.0007505 539.7674539330218 70.912 0.32356 70.435 70.202 70.526 -0.47735 23 14 2 0 0 0 0.21367 1 38689 38689 4.756 0 1 696000 66112 8298 44012 45009 77167 77167 -0.011317142165808036 TSYTLPRCI 9 Unmodified _TSYTLPRCI_ 0 0 0 REV__ENSG00000180090|ENST00000323404|OR3A1 REV__ENSG00000180090|ENST00000323404|OR3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8505554199219 3 351.851432 1052.53247 0.28437 0.00010005 -2.1665 -0.00076227 -1.8821 -0.00066222 351.85004718761434 36.994 0.21967 36.994 36.897 37.117 0 22 10 3 0 0 0 0.54444 1 19692 19692 2.7352 0.82882 1 1924500 + 66113 23139 44013 45010 77168 77168 0.008300967085460798 TTAATLMNAY 10 Unmodified _TTAATLMNAY_ 0 0 0 ENSG00000138160|ENST00000260731|KIF11 ENSG00000138160|ENST00000260731|KIF11 ENSG00000138160|ENST00000260731|KIF11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7539672851562 2 528.755149 1055.49575 0.8263 0.00043691 -0.3764 -0.00019902 0.44991 0.00023789 528.7550081234499 63.228 0.65053 57.052 56.836 57.487 -6.1757 59 36 2 0 0 0 0.44373 1 40971 40971 19.257 2.1441 1 18762000 66114 5027 44014 45011 77169 77169 -0.029781999080114474 TTAPNWASQEG 11 Unmodified _TTAPNWASQEG_ 0 0 0 ENSG00000184384|ENST00000524717|MAML2 ENSG00000184384|ENST00000524717|MAML2 ENSG00000184384|ENST00000524717|MAML2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.1011962890625 2 581.262185 1160.50982 0.78121 0.00045409 -0.89151 -0.0005182 -0.1103 -6.4115E-05 581.7650018453329 39.607 0.10414 39.618 39.55 39.654 0.011452 6 4 2 0 0 0 0.30526 1 21077 21077 2.7352 0.89096 1 710730 66115 9253 44015 45012 77170 77170 -0.0640183115540367 TTATRFPK 8 Unmodified _TTATRFPK_ 0 0 0 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 REV__nc|ENSG00000168014|Q4AC94-2|C2CD3 MSMS AL20221201_MKP_PDAC_01 4 461.2612915039062 2 461.261259 920.507966 NaN NaN NaN NaN NaN NaN NaN 28.73 1 25.582 25.082 26.082 -3.1482 0 0 0 0.62748 1 16053 16053 32.305 2.0807 1 + 66116 22278 44016 45013 77171 77171 0.0445320461733445 TTCAGVMP 8 Unmodified _TTCAGVMP_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-11|CDH23 REV__nc|ENSG00000107736|Q9H251-11|CDH23 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.1761779785156 2 390.174949 778.335346 NaN NaN NaN NaN NaN NaN NaN 15.951 1 15.951 15.451 16.451 0 0 0 0 0.97444 1 7733 7733 0.79363 0 1 + 66117 29558 44017 45014 77172 77172 -0.06268826105906555 TTCSFCCFHL 10 Unmodified _TTCSFCCFHL_ 0 0 0 REV__ENST00000602661.5_1_9:108337365-108363450:+|nuORF REV__ENST00000602661.5_1_9:108337365-108363450:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.231689453125 2 581.22993 1160.44531 0.78592 0.0004568 -0.020959 -1.2182E-05 0.76496 0.00044462 581.2296743245124 75.862 0.55626 69.686 69.3 69.856 -6.1757 37 29 2 0 0 0 0.69064 1 49527 49527 3.9444 1.6417 1 8876100 + 66118 29262 44018 45015 77173 77173 -0.12849768829028108 TTCVDIRWRW 10 Unmodified _TTCVDIRWRW_ 0 0 0 ENSG00000123700|ENST00000243457|KCNJ2 ENSG00000123700|ENST00000243457|KCNJ2 ENSG00000123700|ENST00000243457|KCNJ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.333984375 2 668.334964 1334.65538 NaN NaN NaN NaN NaN NaN NaN 31.626 1 31.626 31.126 32.126 0 0 0 0 0.94014 1 16481 16481 6.2058 0 1 66119 3727 44019 45016 77174 77174 0.001433531598195259 TTEAMEDF 8 Unmodified _TTEAMEDF_ 0 0 0 ENST00000483208.5_2_15:42646603-42694336:+|nuORF;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3 ENST00000483208.5_2_15:42646603-42694336:+|nuORF ENST00000483208.5_2_15:42646603-42694336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.1903991699219 2 472.189308 942.364063 0.48145 0.00022734 1.9977 0.00094328 2.4791 0.0011706 472.1901289104441 67.659 0.20166 67.659 67.541 67.743 0 11 9 2 0 0 0 0.80232 1 37722 37722 5.2307 2.6532 1 1251600 66120 1619 44020 45017 77175 77175 -0.10942429995782277 TTEEEEEEE 9 Unmodified _TTEEEEEEE_ 0 0 0 nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B nc|ENSG00000054523|O60333-2|KIF1B;REV__ENSG00000131116|ENST00000300811|ZNF428 nc|ENSG00000054523|O60333-2|KIF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7095336914062 2 562.709313 1123.40407 0.64754 0.00036438 0.36809 0.00020713 1.0156 0.00057151 562.7095718626648 73.969 0.36342 73.969 73.738 74.102 0 48 15 6 0 0 0 0.62242 1 41218 41218 0 0 1 3346500 66121 760;19775 44021 45018 77176 77176 -0.15269256582155322 TTEGDLLFA 9 Unmodified _TTEGDLLFA_ 0 0 0 nc|ENSG00000159208|Q8N365-2|CIART;ENST00000469255.5_1_1:150255677-150256841:+|nuORF;ENSG00000159208|ENST00000290363|CIART nc|ENSG00000159208|Q8N365-2|CIART nc|ENSG00000159208|Q8N365-2|CIART MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.9769287109375 1 966.477854 965.470577 0.27511 0.00026588 -0.025757 -2.4893E-05 0.24935 0.00024099 966.477140258022 68.862 0.25838 68.862 68.74 68.998 0 16 10 2 0 0 0 0.20727 1 38368 38368 7.9102 0 1 775950 66122 6635 44022 45019 77177 77177 -0.01353931438939071 TTEGSKFVRG 10 Unmodified _TTEGSKFVRG_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2861328125 2 541.285463 1080.55637 NaN NaN NaN NaN NaN NaN NaN 15.122 1 15.122 14.622 15.622 0 0 0 0 0.97855 1 7257 7257 2.9952 0 1 + 66123 21485 44023 45020 77178 77178 0.019316534665676954 TTEGSKFVRG 10 Unmodified _TTEGSKFVRG_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.28466796875 2 541.285463 1080.55637 0.044464 2.4067E-05 0.12997 7.0351E-05 0.17443 9.4418E-05 541.2851222266413 15.027 0.089743 15.033 14.996 15.086 0.0057774 5 3 2 0 0 0 0.69917 1 7491 7491 2.9952 0 1 686120 + 66124 21485 44023 45020 77179 77179 0.019316534665676954 TTEGSKFVRG 10 Unmodified _TTEGSKFVRG_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.285463 1080.55637 -0.73227 -0.00039637 0.95413 0.00051646 0.22185 0.00012009 541.2860263088997 15.15 0.1065 15.136 15.08 15.187 -0.014066 0.051559 0.00010523 NaN 2.9952 47 36 2 NaN NaN NaN NaN 0 NaN NaN 0 461750 + 66125 21485 44023 45020 0.019316534665676954 TTEGSKFVRG 10 Unmodified _TTEGSKFVRG_ 0 0 0 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 REV__nc|ENSG00000159459|Q8IWV7-2|UBR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.285463 1080.55637 0.044464 2.4067E-05 0.12997 7.0351E-05 0.17443 9.4418E-05 541.2851222266413 15.027 0.089743 15.033 14.996 15.086 0.0057774 -0.051559 -0.00078698 NaN 2.9952 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 686120 + 66126 21485 44023 45020 0.019316534665676954 TTEIFASTF 9 Unmodified _TTEIFASTF_ 0 0 0 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2536010742188 2 508.75039 1015.48623 0.35883 0.00018255 0.86638 0.00044077 1.2252 0.00062332 508.7506295504055 79.196 0.92095 78.71 78.436 79.357 -0.48596 88 40 3 0 0 0 0.39863 1 43302 43302 12.532 0 1 3607000 + 66127 19358 44024 45021 77180 77180 -0.020896449219094393 TTELRNQFI 9 Unmodified _TTELRNQFI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3009033203125 2 561.301113 1120.58767 1.122 0.0006298 -0.011462 -6.4337E-06 1.1106 0.00062337 561.3010883023555 80.116 0.27273 79.627 79.507 79.779 -0.48932 16 10 2 0 0 0 0.49272 1 43915 43915 7.9102 0 1 475740 66128 9805 44025 45022 77181 77181 0.03220226500661738 TTEPIPVIF 9 Unmodified _TTEPIPVIF_ 0 0 0 nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8;ENST00000503561.7_1_5:49963882-50057668:+|nuORF;ENST00000503193.5_1_5:49963006-50059077:+|nuORF nc|ENSG00000151883|Q8N3A8-2|PARP8 nc|ENSG00000151883|Q8N3A8-2|PARP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7874145507812 2 508.786776 1015.559 0.18641 9.4844E-05 1.144 0.00058208 1.3305 0.00067692 508.78735006858534 88.534 0.42551 88.03 87.825 88.25 -0.50423 44 18 3 0 0 0 0.39863 1 48484 48484 12.532 0 1 1182900 66129 6153 44026 45023 77182 77182 0.051841088715036676 TTFKEFAEKY 10 Unmodified _TTFKEFAEKY_ 0 0 0 ENST00000483040.1_1_10:132891427-132954311:-|nuORF;ENSG00000176769|ENST00000368642|TCERG1L ENST00000483040.1_1_10:132891427-132954311:-|nuORF ENST00000483040.1_1_10:132891427-132954311:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.3189086914062 2 632.316428 1262.6183 0.32335 0.00020446 4.1719 0.002638 4.4953 0.0028424 632.3202594626817 61.082 0.21778 61.082 60.953 61.171 0 15 8 2 0 0 0 0.65773 1 34045 34045 7.609 1.4032 1 768790 66130 8620 44027 45024 77183 77183 -0.0025003990494951722 TTFKKLKKR 9 Unmodified _TTFKKLKKR_ 0 0 0 REV__nc|ENSG00000257335|O43451-1|MGAM REV__nc|ENSG00000257335|O43451-1|MGAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3754272460938 2 575.376958 1148.73936 1.6303 0.00093803 -0.75085 -0.00043202 0.87944 0.00050601 575.3763343821496 109.44 0.14404 103.27 103.23 103.38 -6.1757 48 33 2 0 0 0 0.61381 1 73129 73129 0.52476 0 1 2396400 + 66131 24564 44028 45025 77184 77184 0.17094252319020597 TTGAGRSA 8 Unmodified _TTGAGRSA_ 0 0 0 REV__ENST00000542532.5_1_12:118704541-118810640:-|nuORF REV__ENST00000542532.5_1_12:118704541-118810640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 720.361328125 1 720.363493 719.356216 -0.2003 -0.00014429 -1.7985 -0.0012955 -1.9988 -0.0014398 720.3618361844385 43.475 0.18635 43.475 43.359 43.545 0 11 8 2 0 0 0 0.80676 1 23611 23611 2.5775 0 1 3684700 + 66132 28620 44029 45026 77185 77185 -0.014687764103882728 TTGCQRRNGF 10 Unmodified _TTGCQRRNGF_ 0 0 0 ENST00000431543.6_1_6:112575248-112575670:-|nuORF ENST00000431543.6_1_6:112575248-112575670:-|nuORF ENST00000431543.6_1_6:112575248-112575670:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2722778320312 2 570.272364 1138.53017 0.63314 0.00036106 2.0857 0.0011894 2.7188 0.0015505 570.2735990577978 46.288 0.32373 41.333 41.119 41.443 -4.9549 35 21 2 0 0 0 0.48505 1 28570 28570 17.113 2.7075 1 13514000 66133 13260 44030 45027 77186 77186 -0.03354938976553967 TTGDSWHIPY 10 Unmodified _TTGDSWHIPY_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-3|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7695922851562 2 588.769645 1175.52474 -0.39904 -0.00023494 0.62888 0.00037026 0.22984 0.00013532 588.7697321001267 29.084 0.13995 29.084 28.982 29.122 0 14 6 3 0 0 0 0.39779 1 15049 15049 21.747 2.4897 1 3213900 66134 1885 44031 45028 77187 77187 -0.056003392873890334 TTGDSWHIPY 10 Unmodified _TTGDSWHIPY_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-3|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.769645 1175.52474 -0.39904 -0.00023494 0.62888 0.00037026 0.22984 0.00013532 588.7697321001267 29.084 0.13995 29.084 28.982 29.122 0 0 0 NaN 21.747 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 3213900 66135 1885 44031 45028 -0.056003392873890334 TTHNADTQT 9 Unmodified _TTHNADTQT_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7213134765625 2 494.720153 987.425752 NaN NaN NaN NaN NaN NaN NaN 5.6777 1 5.6003 5.1003 6.1003 -0.07749 0 0 0 0.8622 1 2803 2803 0 0 1 + 66136 20769 44032 45029 77188 77188 -0.06846362252304061 TTHYLFFLGLY 11 Unmodified _TTHYLFFLGLY_ 0 0 0 ENSG00000136240|ENST00000258739|KDELR2;ENSG00000100196|ENST00000216014|KDELR3;nc|ENSG00000100196|O43731-2|KDELR3 ENSG00000136240|ENST00000258739|KDELR2;ENSG00000100196|ENST00000216014|KDELR3 ENSG00000136240|ENST00000258739|KDELR2 MSMS AL20221201_MKP_PDAC_01 4 458.9066467285156 3 458.907934 1373.70197 NaN NaN NaN NaN NaN NaN NaN 18.954 1 16.333 15.833 16.833 -2.6215 0 0 0 0.93694 1 10012 10012 4.7159 1.1289 1 66137 4803;1766 44033 45030 77189 77189 0.030071162627564263 TTIDWYRFF 9 Unmodified _TTIDWYRFF_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.8711853027344 3 416.873113 1247.59751 0.26016 0.00010845 0.64738 0.00026987 0.90754 0.00037833 416.87355130640736 25.217 0.43094 22.334 22.175 22.606 -2.8831 122 34 5 0 0 0 0.16226 1 13693 13693 19.362 3.6233 1 27430000 66138 732 44034 45031 77190 77190 -0.01638585493969913 TTIQRGLV 8 Unmodified _TTIQRGLV_ 0 0 0 ENSG00000067057|ENST00000381125|PFKP;nc|ENSG00000067057|Q01813-2|PFKP ENSG00000067057|ENST00000381125|PFKP ENSG00000067057|ENST00000381125|PFKP MSMS AL20221201_MKP_PDAC_01 4 444.27001953125 2 444.269084 886.523616 NaN NaN NaN NaN NaN NaN NaN 105.02 1 98.847 98.347 99.347 -6.1757 0 0 0 0.97444 1 70319 70319 4.3292 0 1 66139 946 44035 45032 77191 77191 0.07581491134396856 TTISILIFF 9 Unmodified _TTISILIFF_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.2113037109375 3 352.210954 1053.61103 NaN NaN NaN NaN NaN NaN NaN 69.954 1 69.954 69.454 70.454 0 0 0 0 0.85798 1 38973 38973 0.23584 0 1 + 66140 19788 44036 45033 77192 77192 0.08637272285295694 TTLLVILIQ 9 Unmodified _TTLLVILIQ_ 0 0 0 REV__nc|ENSG00000170482|Q9UHI7-3|SLC23A1 REV__nc|ENSG00000170482|Q9UHI7-3|SLC23A1 MSMS AL20221201_MKP_PDAC_01 4 507.3340454101562 2 507.333893 1012.65323 NaN NaN NaN NaN NaN NaN NaN 106.66 1 100.49 99.987 100.99 -6.1757 0 0 0 0.85798 1 71387 71387 0.52476 0 1 + 66141 22487 44037 45034 77193 77193 0.14741247693677906 TTLNISFKT 9 Unmodified _TTLNISFKT_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7901000976562 2 512.787307 1023.56006 2.9284 0.0015016 0.33822 0.00017343 3.2666 0.0016751 512.7876161883095 97.016 0.38103 97.009 96.826 97.207 -0.007019 22 14 2 0 0 0 0.12424 1 53835 53835 30.637 0 1 12648000 66142 10031 44038 45035 77194 77194 0.04922323240418791 TTLTCIPGVIE 11 Unmodified _TTLTCIPGVIE_ 0 0 0 ENSG00000108591|ENST00000225729|DRG2;ENST00000584212.1_1_17:17997264-18001751:+|nuORF;ENST00000578767.5_1_17:17997264-18002438:+|nuORF;ENST00000496428.6_1_17:17997264-18002989:+|nuORF;ENST00000583162.1_1_17:17991337-18002989:+|nuORF;ENST00000578173.5_1_17:17991241-18001751:+|nuORF;ENST00000582314.5_1_17:17997264-18003464:+|nuORF ENSG00000108591|ENST00000225729|DRG2 ENSG00000108591|ENST00000225729|DRG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8740539550781 3 382.874014 1145.60021 NaN NaN NaN NaN NaN NaN NaN 15.268 1 15.254 14.754 15.754 -0.014067 0 0 0 0.9435 1 7486 7486 0 0 1 66143 2587 44039 45036 77195 77195 0.033235018487175694 TTMIMIGMVSF 11 3 Oxidation (M) _TTM(Oxidation (M))IM(Oxidation (M))IGM(Oxidation (M))VSF_ TTM(1)IM(1)IGM(1)VSF TTM(42)IM(42)IGM(42)VSF 0 0 3 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.7910766601562 2 639.79256 1277.57057 -0.033334 -2.1327E-05 0.35928 0.00022987 0.32595 0.00020854 639.7912919389303 37.785 0.41512 37.785 37.51 37.925 0 58 20 4 0 0 0 0.10551 1 20168 20168 41.84 9.0539 1 9572900 66144 3438 44040 45037 77196 77196 612;613;614 -0.05711521483317483 TTPAAAITC 9 Unmodified _TTPAAAITC_ 0 0 0 REV__nc|ENSG00000196531|E9PAV3-2|NACA REV__nc|ENSG00000196531|E9PAV3-2|NACA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.7127380371094 2 424.712753 847.410954 NaN NaN NaN NaN NaN NaN NaN 96.887 1 96.887 96.387 97.387 0 0 0 0 0.8622 1 53539 53539 0 0 1 + 66145 23839 44041 45038 77197 77197 -0.018855256540064147 TTPSQYLLL 9 Unmodified _TTPSQYLLL_ 0 0 0 REV__nc|ENSG00000102893|Q93100-4|PHKB REV__nc|ENSG00000102893|Q93100-4|PHKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.289794921875 2 518.289682 1034.56481 0.59923 0.00031057 -0.35631 -0.00018467 0.24291 0.0001259 518.2901458944771 73.064 0.37289 72.588 72.386 72.758 -0.47588 20 16 2 0 0 0 0.30562 1 40015 40015 16.942 1.0951 1 1858000 + 66146 18264 44042 45039 77198 77198 0.04891207383184337 TTQEITQLF 9 Unmodified _TTQEITQLF_ 0 0 0 nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16 nc|ENSG00000124222|O14662-6|STX16 nc|ENSG00000124222|O14662-6|STX16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7822875976562 2 540.782222 1079.54989 -0.10858 -5.8719E-05 -0.073054 -3.9507E-05 -0.18164 -9.8226E-05 540.7821624157598 71.431 0.40588 71.431 71.266 71.672 0 58 19 4 0 0 0 0.0082661 2 39827 39727;39827 92.491 44.743 1 13095000 66147 3765 44043 45040 77199;77200 77200 0.013297155151803963 TTQEITQLF 9 Unmodified _TTQEITQLF_ 0 0 0 nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16 nc|ENSG00000124222|O14662-6|STX16 nc|ENSG00000124222|O14662-6|STX16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7827758789062 2 540.782222 1079.54989 0.38713 0.00020935 1.7318 0.00093654 2.119 0.0011459 540.7832313313176 71.933 0.36966 71.457 71.266 71.636 -0.4761 42 14 4 0 0 0 0.020973 2 39410 39313;39410 62.573 29.787 1 6521900 66148 3765 44043 45040 77201;77202 77202 0.013297155151803963 TTQEITQLF 9 Unmodified _TTQEITQLF_ 0 0 0 nc|ENSG00000124222|O14662-6|STX16;nc|ENSG00000124222|O14662-2|STX16;nc|ENSG00000124222|O14662-4|STX16;nc|ENSG00000124222|O14662-5|STX16;ENSG00000124222|ENST00000371141|STX16 nc|ENSG00000124222|O14662-6|STX16 nc|ENSG00000124222|O14662-6|STX16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7823486328125 2 540.782222 1079.54989 0.40419 0.00021858 0.20952 0.00011331 0.61371 0.00033188 540.7823812755316 78.843 0.6516 72.667 72.356 73.008 -6.1757 89 38 3 0 0 0 0.013041 2 51644 51513;51644 71.922 39.137 1 36551000 66149 3765 44043 45040 77203;77204 77204 0.013297155151803963 TTRKKKKLKK 10 Unmodified _TTRKKKKLKK_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|194|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1258.461669921875 1 1258.86815 1257.86087 0.27395 0.00034487 -0.69099 -0.00086987 -0.41704 -0.000525 1258.866655859269 53.831 0.079296 53.364 53.327 53.407 -0.46664 5 3 2 0 0 0 0.72607 1 29141 29141 0 0 1 1308900 + 66150 29365 44044 45041 77205 77205 0.242258746815196 TTRRKRKRENA 11 Unmodified _TTRRKRKRENA_ 0 0 0 REV__ENSG00000064835|ENST00000350375|POU1F1 REV__ENSG00000064835|ENST00000350375|POU1F1 MSMS AL20221201_MKP_PDAC_01 4 472.6167907714844 3 472.614919 1414.82293 NaN NaN NaN NaN NaN NaN NaN 109.16 1 102.98 102.48 103.48 -6.1757 0 0 0 0.94184 1 72916 72916 0.40827 0.24894 1 + 66151 17363 44045 45042 77206 77206 0.1321075674882195 TTRRKRKRENA 11 Unmodified _TTRRKRKRENA_ 0 0 0 REV__ENSG00000064835|ENST00000350375|POU1F1 REV__ENSG00000064835|ENST00000350375|POU1F1 MSMS AL20221201_MKP_PDAC_01 4 708.4218139648438 2 708.41874 1414.82293 NaN NaN NaN NaN NaN NaN NaN 109.75 1 103.57 103.07 104.07 -6.1757 0 0 0 0.94184 1 73276 73276 1.1933 0.88631 1 + 66152 17363 44045 45042 77207 77207 0.1321075674882195 TTRRKRKRENA 11 Unmodified _TTRRKRKRENA_ 0 0 0 REV__ENSG00000064835|ENST00000350375|POU1F1 REV__ENSG00000064835|ENST00000350375|POU1F1 MSMS AL20221201_MKP_PDAC_01 4 708.4212646484375 2 708.41874 1414.82293 NaN NaN NaN NaN NaN NaN NaN 109.93 1 103.75 103.25 104.25 -6.1757 0 0 0 0.94184 1 73388 73388 1.1933 0.79263 1 + 66153 17363 44045 45042 77208 77208 0.1321075674882195 TTRSTFSTNY 10 Unmodified _TTRSTFSTNY_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000470335.1_1_22:20837987-20843498:-|nuORF ENSG00000111057|ENST00000388835|KRT18 ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2782592773438 2 589.277835 1176.54112 -0.75782 -0.00044657 1.9925 0.0011741 1.2347 0.00072758 589.2788403969821 28.249 0.16255 28.249 28.149 28.311 0 16 7 3 0 0 0 0.42967 1 14584 14584 28.495 0 1 920800 66154 2759 44046 45043 77209 77209 -0.04009258121277526 TTRTRPRES 9 Unmodified _TTRTRPRES_ 0 0 0 ENST00000534706.1_1_11:6630001-6630227:+|nuORF ENST00000534706.1_1_11:6630001-6630227:+|nuORF ENST00000534706.1_1_11:6630001-6630227:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8899230957031 3 368.535383 1102.58432 0.40422 0.00014897 3.2535 0.001199 3.6577 0.001348 368.53686094363536 52.857 0.23676 52.794 52.724 52.961 -0.063423 14 11 2 0 0 0 0.19205 1 28616 28616 6.6304 2.1015 1 2082500 66155 14957 44047 45044 77210 77210 0.03712976446649918 TTSLAAPISL 10 Unmodified _TTSLAAPISL_ 0 0 0 ENSG00000088827|ENST00000344754|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1 ENSG00000088827|ENST00000344754|SIGLEC1 ENSG00000088827|ENST00000344754|SIGLEC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.7438659667969 2 487.281857 972.549162 1.4432 0.00070322 0.24939 0.00012152 1.6925 0.00082474 487.28185155622003 64.371 0.34339 58.196 58.036 58.38 -6.1757 27 18 2 0 0 0 0.22667 1 41782 41782 6.7232 0 1 14567000 66156 1498 44048 45045 77211 77211 0.06178920866148019 TTSPAYSFAL 10 Unmodified _TTSPAYSFAL_ 0 0 0 REV__ENSG00000080709|ENST00000673685|KCNN2 REV__ENSG00000080709|ENST00000673685|KCNN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2650146484375 2 529.263665 1056.51278 1.0634 0.00056283 1.169 0.00061872 2.2325 0.0011816 529.2644136867465 50.727 0.48177 45.078 44.834 45.316 -5.649 69 29 3 0 0 0 0.30444 1 31831 31831 32.305 1.0371 1 126060000 + 66157 17673 44049 45046 77212 77212 -0.013219560305742561 TTSTLAMG 8 Unmodified _TTSTLAMG_ 0 0 0 HFM1|p.V1397Sfs*6|1|0.1|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant;ENSG00000162669|ENST00000370425|HFM1 HFM1|p.V1397Sfs*6|1|0.1|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant HFM1|p.V1397Sfs*6|1|0.1|ENSG00000162669|chr1:91262290-91262291|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.191650390625 2 391.191654 780.368755 -0.80317 -0.0003142 2.2252 0.00087049 1.4221 0.0005563 391.1924677799 55.466 0.16351 55.466 55.367 55.531 0 9 6 2 0 0 0 0.80992 1 30841 30841 0.69038 0.69038 1 533540 66158 6890 44050 45047 77213 77213 -0.030215010623578564 TTTAIAPII 9 Unmodified _TTTAIAPII_ 0 0 0 REV__ENSG00000033178|ENST00000322244|UBA6;REV__ENSG00000182179|ENST00000333486|UBA7;REV__nc|ENSG00000130985|P22314-2|UBA1 REV__ENSG00000033178|ENST00000322244|UBA6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2745666503906 2 450.773668 899.532783 3.5821 0.0016147 0.74871 0.0003375 4.3308 0.0019522 450.77455191695054 97.648 0.46161 97.63 97.411 97.873 -0.018188 28 16 2 0 0 0 0.21473 1 54156 54156 4.3292 0 1 5498800 + 66159 17155;23249;19760 44051 45048 77214 77214 0.07899839700041866 TTTDDLDF 8 Unmodified _TTTDDLDF_ 0 0 0 ENST00000368854.7_1_10:125528237-125699754:-|nuORF;ENSG00000121898|ENST00000241305|CPXM2 ENST00000368854.7_1_10:125528237-125699754:-|nuORF ENST00000368854.7_1_10:125528237-125699754:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2003784179688 2 464.20073 926.386907 NaN NaN NaN NaN NaN NaN NaN 53.715 1 53.715 53.215 54.215 0 0 0 0 0.97444 1 29788 29788 0.79363 0 1 66160 3606 44052 45049 77215 77215 -0.07923087606661738 TTTLPSGSHTL 11 Unmodified _TTTLPSGSHTL_ 0 0 0 REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7958984375 2 557.790578 1113.5666 1.2077 0.00067367 2.3576 0.001315 3.5653 0.0019887 557.7928354057152 54.395 0.51319 48.53 48.266 48.779 -5.8653 63 31 3 0 0 0 0.46578 1 34421 34421 18.146 0 1 30711000 + 66161 28749 44053 45050 77216 77216 0.014362164011572531 TTVCTDEF 8 Unmodified _TTVCTDEF_ 0 0 0 REV__ENSG00000173930|ENST00000310954|SLCO4C1 REV__ENSG00000173930|ENST00000310954|SLCO4C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.1930541992188 2 458.191851 914.369149 0.33255 0.00015237 1.2686 0.00058126 1.6011 0.00073363 458.1922597457927 43.633 0.262 43.633 43.461 43.723 0 26 12 3 0 0 0 0.80232 1 23667 23667 5.2307 2.3415 1 28341000 + 66162 22760 44054 45051 77217 77217 -0.09146126133168764 TTVCTDEF 8 Unmodified _TTVCTDEF_ 0 0 0 REV__ENSG00000173930|ENST00000310954|SLCO4C1 REV__ENSG00000173930|ENST00000310954|SLCO4C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.1918029785156 2 458.191851 914.369149 NaN NaN NaN NaN NaN NaN NaN 77.405 1 76.923 76.423 77.423 -0.4826 0 0 0 0.97444 1 42375 42375 0.79363 0 1 + 66163 22760 44054 45051 77218 77218 -0.09146126133168764 TTVKDTKCTVT 11 Carbamidomethyl (C) _TTVKDTKC(Carbamidomethyl (C))TVT_ TTVKDTKC(1)TVT TTVKDTKC(44)TVT 0 1 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.3240966796875 2 627.323928 1252.6333 0.52656 0.00033033 0.29623 0.00018583 0.8228 0.00051616 627.3241013409296 49.862 0.37989 49.862 49.695 50.075 0 53 17 5 0 0 0 0.088819 1 27545 27545 43.772 13.932 1 9928200 66164 6400 44055 45052 77219 77219 637 0.017090839007096292 TTVLVWLYTLL 11 Unmodified _TTVLVWLYTLL_ 0 0 0 REV__ENST00000481107.1_1_17:15928260-15930833:+|nuORF REV__ENST00000481107.1_1_17:15928260-15930833:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.39013671875 2 661.391939 1320.76933 1.0201 0.00067466 -2.6422 -0.0017475 -1.6221 -0.0010729 661.3899858003828 96.647 0.20091 90.472 90.387 90.587 -6.1757 18 11 2 0 0 0 0.054439 1 64062 64062 49.933 4.2334 1 9324800 + 66165 27686 44056 45053 77220 77220 0.12177146473709399 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7741088867188 2 499.773865 997.533177 0.93101 0.00046529 0.96805 0.0004838 1.8991 0.0009491 499.77449962888005 54.205 0.30072 54.205 54.051 54.352 0 37 13 4 0 0 0 0.078417 2 30028 30028;30132 38.151 21.209 1 7880600 66166 2314 44057 45054 77221;77222 77221 0.034312146292336365 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.5386962890625 1 998.540454 997.533177 0.52134 0.00052058 -0.033875 -3.3826E-05 0.48747 0.00048676 998.5403938077791 54.177 0.30503 54.177 54.07 54.375 0 30 13 3 0 0 0 0.010877 2 30058 30058;30168 77.984 41.94 1 4174500 66167 2314 44057 45054 77223;77224 77223 0.034312146292336365 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 998.5414428710938 1 998.540454 997.533177 0.0039471 3.9413E-06 0.97983 0.0009784 0.98378 0.00098234 998.5425681413118 54.779 0.19773 54.312 54.242 54.44 -0.46664 16 9 2 0 0 0 0.06187 1 29708 29708 42.095 21.641 1 2199500 66168 2314 44057 45054 77225 77225 0.034312146292336365 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2584533691406 2 499.773865 997.533177 -0.057808 -2.8891E-05 1.3597 0.00067954 1.3019 0.00065065 499.77446698249094 54.81 0.25968 54.343 54.242 54.502 -0.46664 21 12 2 0 0 0 0.19613 1 29727 29727 12.532 12.532 1 2986200 66169 2314 44057 45054 77226 77226 0.034312146292336365 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.5416870117188 1 998.540454 997.533177 0.68763 0.00068663 1.3826 0.0013805 2.0702 0.0020672 998.540596632905 62.28 0.22844 56.104 56.002 56.23 -6.1757 14 12 2 0 0 0 0.0090851 1 40168 40168 85.357 49.313 1 12152000 66170 2314 44057 45054 77227 77227 0.034312146292336365 TTVTTITVY 9 Unmodified _TTVTTITVY_ 0 0 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7749938964844 2 499.773865 997.533177 1.015 0.00050728 -0.15858 -7.9255E-05 0.85645 0.00042803 499.7738420266525 62.302 0.35257 56.126 55.95 56.302 -6.1757 30 19 2 0 0 0 0.0086179 1 40179 40179 89.427 67.68 1 19096000 66171 2314 44057 45054 77228 77228 0.034312146292336365 TTWEPLRLF 9 Unmodified _TTWEPLRLF_ 0 0 0 ENST00000511277.5_1_17:47283751-47283994:-|nuORF ENST00000511277.5_1_17:47283751-47283994:-|nuORF ENST00000511277.5_1_17:47283751-47283994:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8767395019531 3 388.213358 1161.61824 -0.54266 -0.00021067 -3.8938 -0.0015116 -4.4364 -0.0017223 388.21262261037936 18.618 0.080875 18.641 18.594 18.675 0.023106 22 10 3 0 0 0 0.61381 1 9322 9322 0.23584 0 1 287220 66172 14606 44058 45055 77229 77229 0.043900048856812646 TTWGLLYSS 9 Unmodified _TTWGLLYSS_ 0 0 0 REV__ENSG00000169393|ENST00000339841|ELSPBP1 REV__ENSG00000169393|ENST00000339841|ELSPBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.7542724609375 2 514.258382 1026.50221 1.2643 0.00065018 0.33549 0.00017253 1.5998 0.00082271 514.2583409254484 79.218 0.48819 73.042 72.865 73.353 -6.1757 38 27 2 0 0 0 0.16785 1 52120 52120 16.942 4.4107 1 10849000 + 66173 22397 44059 45056 77230 77230 -0.009979386850091032 TTWRWRMTIT 10 Unmodified _TTWRWRMTIT_ 0 0 0 REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.5702514648438 3 451.236168 1350.68668 0.13201 5.9568E-05 -1.5992 -0.00072162 -1.4672 -0.00066205 451.2352183831043 51.918 0.19883 51.918 51.777 51.976 0 17 8 3 0 0 0 0.67413 1 28703 28703 5.7834 1.0675 1 3364100 + 66174 24745 44060 45057 77231 77231 0.025359261939001954 TTWRWRMTIT 10 Unmodified _TTWRWRMTIT_ 0 0 0 REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF REV__ENST00000216807.11_1_14:36295630-36302200:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 451.236168 1350.68668 0.8228 0.00037127 -1.9204 -0.00086655 -1.0976 -0.00049528 451.2356314069761 52.095 0.18974 52.036 51.917 52.107 -0.058918 0.04941 -0.00052802 NaN 5.7834 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2095600 + 66175 24745 44060 45057 0.025359261939001954 TTYLFYLDTL 10 Unmodified _TTYLFYLDTL_ 0 0 0 REV__ENST00000396842.6_1_3:15481697-15481937:+|nuORF REV__ENST00000396842.6_1_3:15481697-15481937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.21630859375 3 417.216545 1248.62781 -0.11829 -4.9351E-05 0.025676 1.0713E-05 -0.092611 -3.8639E-05 417.21649293760987 29.842 0.16254 29.872 29.759 29.921 0.030104 8 5 2 0 0 0 0.67459 1 15607 15607 3.0723 2.5663 1 1727300 + 66176 26517 44061 45058 77232 77232 0.013437283805615152 TTYLLMGHWAL 11 Unmodified _TTYLLMGHWAL_ 0 0 0 nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.336181640625 2 653.336641 1304.65873 -0.026928 -1.7593E-05 -2.4877 -0.0016253 -2.5146 -0.0016429 653.3349660188981 92.779 0.15237 92.779 92.718 92.87 0 13 10 2 0 0 0 0.72952 1 51317 51317 1.4819 1.0236 1 332430 66177 7777 44062 45059 77233 77233 0.018586032138273367 TTYLLMGHWAL 11 Unmodified _TTYLLMGHWAL_ 0 0 0 nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 nc|ENSG00000168539|P11229-2|CHRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.335205078125 2 653.336641 1304.65873 -0.025984 -1.6976E-05 -1.7209 -0.0011243 -1.7469 -0.0011413 653.3352748948646 97.844 0.2149 97.844 97.711 97.926 0 12 7 2 0 0 0 0.68427 1 54052 54052 5.7319 1.203 1 404120 66178 7777 44062 45059 77234 77234 0.018586032138273367 TVADKIHSV 9 Unmodified _TVADKIHSV_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7733154296875 2 485.271824 968.529095 -0.12686 -6.1563E-05 -0.33244 -0.00016132 -0.4593 -0.00022289 485.27160498032094 23.395 0.22165 23.395 23.307 23.529 0 25 10 3 0 0 0 0.07087 1 11909 11909 39.95 12.321 1 3976800 66179 10913 44063 45060 77235 77235 0.043571699261860886 TVADKIHSV 9 Unmodified _TVADKIHSV_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2721862792969 2 485.271824 968.529095 0.57124 0.00027721 -0.16206 -7.8645E-05 0.40918 0.00019856 485.2718282860955 26.639 0.33758 23.688 23.522 23.86 -2.9511 42 17 3 0 0 0 0.0082981 2 14646 14646;14761 96.936 45.306 1 35629000 66180 10913 44063 45060 77236;77237 77236 0.043571699261860886 TVAEINATM 9 Oxidation (M) _TVAEINATM(Oxidation (M))_ TVAEINATM(1) TVAEINATM(75) 0 0 1 ENST00000506047.1_1_4:77936059-77941836:+|nuORF;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11 ENST00000506047.1_1_4:77936059-77941836:+|nuORF ENST00000506047.1_1_4:77936059-77941836:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.23486328125 2 483.23405 964.453547 1.4514 0.00070136 0.64682 0.00031257 2.0982 0.0010139 483.2339839810753 33.908 0.39915 29.923 29.785 30.184 -3.9853 36 21 2 0 0 0 0.011968 1 19505 19505 74.929 49.53 1 10219000 66181 5099 44064 45061 77238 77238 938 -0.030101753164103684 TVAEITNACF 10 Carbamidomethyl (C) _TVAEITNAC(Carbamidomethyl (C))F_ TVAEITNAC(1)F TVAEITNAC(44)F 0 1 0 ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2659912109375 2 563.265881 1124.51721 0.29246 0.00016473 -1.4785 -0.00083279 -1.186 -0.00066805 563.2660177928713 54.994 0.44988 54.994 54.812 55.262 0 52 19 4 0 0 0 0.11755 1 30546 30546 43.858 21.122 1 7677500 66182 7630 44065 45062 77239 77239 739 -0.04006814879335252 TVAEITNACF 10 Carbamidomethyl (C) _TVAEITNAC(Carbamidomethyl (C))F_ TVAEITNAC(1)F TVAEITNAC(82)F 0 1 0 ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2667236328125 2 563.265881 1124.51721 1.0607 0.00059747 -1.482 -0.00083477 -0.42129 -0.0002373 563.2659150358866 63.108 0.68197 56.932 56.544 57.226 -6.1757 96 36 4 0 0 0 0.013171 2 40706 40706;40836 81.89 51.254 1 141620000 66183 7630 44065 45062 77240;77241 77240 739 -0.04006814879335252 TVAESFAAL 9 Unmodified _TVAESFAAL_ 0 0 0 REV__ENSG00000070886|ENST00000166244|EPHA8 REV__ENSG00000070886|ENST00000166244|EPHA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4725341796875 1 908.472374 907.465098 0.17483 0.00015883 1.0774 0.00097876 1.2522 0.0011376 908.4732960399759 61.265 0.45802 61.265 60.975 61.433 0 48 19 3 0 0 0 0.023164 1 34150 34150 60.39 15.983 1 4118700 + 66184 17485 44066 45063 77242 77242 0.007663897692395949 TVAEVVETM 9 Oxidation (M) _TVAEVVETM(Oxidation (M))_ TVAEVVETM(1) TVAEVVETM(85) 0 0 1 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.741455078125 2 497.741708 993.468863 -0.27143 -0.0001351 -0.90548 -0.00045069 -1.1769 -0.00058579 497.7413914516016 33.533 0.55782 33.533 33.306 33.864 0 103 42 3 0 0 0 0.0090851 2 17624 17517;17624 85.357 34.502 1 72623000 66185 613 44067 45064 77243;77244 77244 89 -0.02813308519205293 TVAEVVETM 9 Oxidation (M) _TVAEVVETM(Oxidation (M))_ TVAEVVETM(1) TVAEVVETM(110) 0 0 1 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7423095703125 2 497.741708 993.468863 0.33897 0.00016872 0.058477 2.9106E-05 0.39744 0.00019782 497.7417776963369 39.908 0.40334 35.379 35.155 35.558 -4.5294 65 30 3 0 0 0 0.0067112 2 23646 23646;23792 112.59 53.944 1 66902000 66186 613 44067 45064 77245;77246 77245 89 -0.02813308519205293 TVAEVVETM 9 Unmodified _TVAEVVETM_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7444152832031 2 489.74425 977.473948 0.28509 0.00013962 -0.86448 -0.00042337 -0.57939 -0.00028375 489.7441732271303 52.748 0.32796 52.748 52.552 52.88 0 38 14 4 0 0 0 0.016184 1 29170 29170 67.344 31.3 1 10687000 66187 613 44067 45065 77247 77247 -0.015690046565850935 TVAEVVETM 9 Unmodified _TVAEVVETM_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.4824829101562 1 978.481224 977.473948 0.19427 0.00019009 0.37108 0.0003631 0.56535 0.00055318 978.4816423501451 52.717 0.2617 52.717 52.596 52.858 0 18 11 2 0 0 0 0.026094 1 29171 29171 57.471 21.427 1 2479500 66188 613 44067 45065 77248 77248 -0.015690046565850935 TVAEVVETM 9 Unmodified _TVAEVVETM_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7445373535156 2 489.74425 977.473948 1.0324 0.00050562 -0.21321 -0.00010442 0.81921 0.0004012 489.7441928600463 61.186 0.44714 55.039 54.809 55.256 -6.1478 58 22 3 0 0 0 0.0090851 2 39418 39293;39418 85.357 34.502 1 119320000 66189 613 44067 45065 77249;77250 77250 -0.015690046565850935 TVAEVVETM 9 Unmodified _TVAEVVETM_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20221201_MKP_PDAC_01 4 978.4816284179688 1 978.481224 977.473948 0.89069 0.00087152 0.30012 0.00029366 1.1908 0.0011652 978.4812322505345 61.179 0.30994 55.031 54.865 55.175 -6.1478 20 15 2 0 0 0 0.016184 2 39351 39351;39357 67.344 22.937 1 17919000 66190 613 44067 45065 77251;77252 77251 -0.015690046565850935 TVAGAVVTY 9 Unmodified _TVAGAVVTY_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 880.47802734375 1 880.47746 879.470183 -0.088226 -7.7681E-05 1.0064 0.00088612 0.91818 0.00080844 880.4786445817489 43.516 0.20593 43.516 43.399 43.605 0 20 9 3 0 0 0 0.038285 1 23605 23605 50.855 16.753 1 6762900 66191 1022 44068 45066 77253 77253 0.02562693631853108 TVAGAVVTY 9 Unmodified _TVAGAVVTY_ 0 0 0 nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 nc|ENSG00000070214|Q8WWI5-3|SLC44A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 880.4791870117188 1 880.47746 879.470183 0.81521 0.00071777 1.5073 0.0013271 2.3225 0.0020449 880.478237795767 50.941 0.23191 45.292 45.134 45.366 -5.649 19 13 2 0 0 0 0.0090851 1 31977 31977 85.357 37.011 1 15090000 66192 1022 44068 45066 77254 77254 0.02562693631853108 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 925.442138671875 1 925.441409 924.434132 0.61723 0.00057121 -0.015006 -1.3887E-05 0.60223 0.00055733 925.4411372430391 49.396 0.4112 49.396 49.194 49.606 0 66 18 5 0 0 0 0.0090851 2 27214 27097;27214 85.357 37.011 1 84604000 66193 9998 44069 45067 77255;77256 77256 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2247924804688 2 463.224342 924.434132 0.9547 0.00044224 -0.24395 -0.000113 0.71075 0.00032924 463.2241771968722 49.363 0.36757 49.363 49.215 49.582 0 41 16 3 0 0 0 0.14602 2 27124 27124;27243 28.487 9.0478 1 40221000 66194 9998 44069 45067 77257;77258 77257 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 925.44140625 1 925.441409 924.434132 0.68721 0.00063597 -0.38774 -0.00035883 0.29946 0.00027714 925.440950774201 49.834 0.37254 49.442 49.277 49.65 -0.3923 57 18 4 0 0 0 0.008678 2 26847 26743;26847 104.8 45.045 1 55777000 66195 9998 44069 45067 77259;77260 77260 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.2245788574219 2 463.224342 924.434132 0.66593 0.00030848 -0.27507 -0.00012742 0.39086 0.00018106 463.22415359711755 49.847 0.37254 49.454 49.277 49.65 -0.3923 42 18 3 0 0 0 0.087258 1 26874 26874 36.044 11.37 1 17523000 66196 9998 44069 45067 77261 77261 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 925.4414672851562 1 925.441409 924.434132 1.0146 0.00093898 -1.7827 -0.0016498 -0.76804 -0.00071078 925.4397181362777 49.489 0.29906 49.44 49.31 49.609 -0.048824 21 14 2 0 0 0 0.070838 1 26707 26707 39.957 14.558 1 3481000 66197 9998 44069 45067 77262 77262 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.224853515625 2 463.224342 924.434132 0.68891 0.00031912 0.063349 2.9345E-05 0.75226 0.00034846 463.2243697965472 56.585 0.57295 50.609 50.286 50.859 -5.9769 107 32 4 0 0 0 0.019303 3 36236 35954;36097;36236 64.236 26.262 1 520330000 66198 9998 44069 45067 77263;77264;77265 77265 -0.031107635450098314 TVAGGAWTY 9 Unmodified _TVAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 925.4420166015625 1 925.441409 924.434132 0.67775 0.00062722 -0.25618 -0.00023708 0.42157 0.00039014 925.4410965360564 56.527 0.65657 50.55 50.266 50.923 -5.9769 121 37 4 0 0 0 0.0067112 3 36046 36046;36183;36321 112.59 57.82 1 631110000 66199 9998 44069 45067 77266;77267;77268 77266 -0.031107635450098314 TVAKHFARV 9 Unmodified _TVAKHFARV_ 0 0 0 REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF REV__ENST00000477241.1_1_2:239037864-239040370:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7682495117188 2 514.803626 1027.5927 0.39246 0.00020204 -0.82942 -0.00042699 -0.43696 -0.00022495 514.8029924947307 88.912 0.24525 88.408 88.273 88.519 -0.50423 19 10 2 0 0 0 0.18118 1 48622 48622 18.135 2.2878 1 305700 + 66200 20712 44070 45068 77269 77269 0.08000575153937461 TVALALVPF 9 Unmodified _TVALALVPF_ 0 0 0 ENSG00000205667|ENST00000381130|ARSH ENSG00000205667|ENST00000381130|ARSH ENSG00000205667|ENST00000381130|ARSH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2911682128906 2 465.786579 929.558604 0.38499 0.00017932 0.9429 0.00043919 1.3279 0.00061852 465.7872566240432 87.397 0.3929 86.893 86.708 87.101 -0.50423 25 16 2 0 0 0 0.20727 1 47716 47716 7.9102 3.1541 1 592420 66201 10375 44071 45069 77270 77270 0.09100733942329953 TVALSLLEAF 10 Unmodified _TVALSLLEAF_ 0 0 0 ENST00000322535.10_2_11:65830982-65831169:+|nuORF ENST00000322535.10_2_11:65830982-65831169:+|nuORF ENST00000322535.10_2_11:65830982-65831169:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.281005859375 2 532.305332 1062.59611 0.43735 0.0002328 0.94796 0.0005046 1.3853 0.00073741 532.3060587410379 56.863 0.22768 56.863 56.746 56.974 0 21 9 3 0 0 0 0.69064 1 31581 31581 3.9444 0 1 2269400 66202 11787 44072 45070 77271 77271 0.06731780417271693 TVAPAQVAL 9 Unmodified _TVAPAQVAL_ 0 0 0 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 ENSG00000105556|ENST00000264819|MIER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.2581787109375 2 435.258185 868.501818 0.7871 0.00034259 -0.34938 -0.00015207 0.43772 0.00019052 435.25805931645795 51.176 0.27625 51.176 51.05 51.326 0 19 12 2 0 0 0 0.03568 1 28273 28273 52.268 19.963 1 2663700 66203 2334 44073 45071 77272 77272 0.062306863857997996 TVAQITQRF 9 Unmodified _TVAQITQRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2987670898438 2 532.298373 1062.58219 0.096045 5.1124E-05 -0.23953 -0.0001275 -0.14349 -7.6378E-05 532.2984700004735 43.008 0.31685 42.698 42.546 42.863 -0.31039 40 14 4 0 0 0 0.0047067 1 22837 22837 118.07 59.39 1 41481000 66204 10315 44074 45072 77273 77273 0.05340547708851773 TVAQITQRF 9 Unmodified _TVAQITQRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3001708984375 2 532.298373 1062.58219 0.52286 0.00027832 0.9352 0.00049781 1.4581 0.00077612 532.2989038069809 42.689 0.2475 42.68 42.539 42.786 -0.0088196 27 11 3 0 0 0 0.012668 1 22842 22842 72.968 31.128 1 14881000 66205 10315 44074 45072 77274 77274 0.05340547708851773 TVAQITQRF 9 Unmodified _TVAQITQRF_ 0 0 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3003540039062 2 532.298373 1062.58219 1.2705 0.00067629 1.3929 0.00074144 2.6634 0.0014177 532.2991202638304 47.793 0.69343 42.559 42.294 42.988 -5.2339 110 41 4 0 0 0 0.0087807 3 29897 29599;29739;29897 106.94 36.608 1 120300000 66206 10315 44074 45072 77275;77276;77277 77277 0.05340547708851773 TVATAVEQY 9 Unmodified _TVATAVEQY_ 0 0 0 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2472534179688 2 491.248015 980.481476 0.13775 6.7668E-05 -0.73211 -0.00035965 -0.59436 -0.00029198 491.24728424937194 37.451 0.42466 37.451 37.18 37.604 0 33 22 2 0 0 0 0.0090851 1 19911 19911 85.357 34.502 1 10357000 66207 3205 44075 45073 77278 77278 -0.009545290646542526 TVATAVEQY 9 Unmodified _TVATAVEQY_ 0 0 0 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 ENSG00000116209|ENST00000234831|TMEM59 MSMS AL20221201_MKP_PDAC_01 4 491.2492980957031 2 491.248015 980.481476 NaN NaN NaN NaN NaN NaN NaN 43.908 1 39.143 38.643 39.643 -4.7648 0 0 0 0.050352 1 26733 26733 57.471 28.985 1 66208 3205 44075 45073 77279 77279 -0.009545290646542526 TVCDFRLSY 9 Carbamidomethyl (C) _TVC(Carbamidomethyl (C))DFRLSY_ TVC(1)DFRLSY TVC(74)DFRLSY 0 1 0 ENST00000533086.5_1_19:15228578-15234387:-|nuORF;ENSG00000105135|ENST00000263383|ILVBL ENST00000533086.5_1_19:15228578-15234387:-|nuORF ENST00000533086.5_1_19:15228578-15234387:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7739868164062 2 580.773874 1159.53319 0.88027 0.00051124 0.3767 0.00021878 1.257 0.00073002 580.7737073593211 59.67 0.28984 53.555 53.394 53.684 -6.1147 33 15 3 0 0 0 0.012228 1 38299 38299 74.2 35.585 1 41277000 66209 2278 44076 45074 77280 77280 224 -0.04019108642387437 TVCDSPAHSAF 11 Unmodified _TVCDSPAHSAF_ 0 0 0 ENST00000609737.1_1_22:46436518-46436836:-|nuORF ENST00000609737.1_1_22:46436518-46436836:-|nuORF ENST00000609737.1_1_22:46436518-46436836:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2498168945312 2 567.747856 1133.48116 0.32391 0.0001839 0.85417 0.00048495 1.1781 0.00066885 567.7486747679301 66.409 0.18641 65.925 65.838 66.025 -0.48323 12 8 2 0 0 0 0.67922 1 36269 36269 6.2058 1.4498 1 1668700 66210 15885 44077 45075 77281 77281 -0.08024272056172777 TVCEIKLTIH 10 Unmodified _TVCEIKLTIH_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.218017578125 3 386.218003 1155.63218 -0.017693 -6.8332E-06 -0.46525 -0.00017969 -0.48294 -0.00018652 386.21774116460114 51.638 0.39596 51.579 51.396 51.792 -0.058918 30 19 2 0 0 0 0.70151 1 28016 28016 1.3296 0 1 3595600 + 66211 21988 44078 45076 77282 77282 0.060589143224888176 TVCGTEQYF 9 Unmodified _TVCGTEQYF_ 0 0 0 ENST00000520568.1_1_8:89198619-89339435:-|nuORF;nc|ENSG00000156103|P51512-2|MMP16;ENSG00000156103|ENST00000286614|MMP16 ENST00000520568.1_1_8:89198619-89339435:-|nuORF;nc|ENSG00000156103|P51512-2|MMP16 nc|ENSG00000156103|P51512-2|MMP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2245483398438 2 524.226225 1046.4379 -0.33057 -0.00017329 -0.083254 -4.3644E-05 -0.41382 -0.00021694 524.2257598921849 55.586 0.36914 55.586 55.262 55.631 0 20 16 2 0 0 0 0.41742 1 30894 30894 11.64 0 1 1451700 66212 16291;14730 44079 45077 77283 77283 -0.08346461833457397 TVCHHGVG 8 Unmodified _TVCHHGVG_ 0 0 0 ENST00000576601.1_1_16:10972846-10989199:+|nuORF ENST00000576601.1_1_16:10972846-10989199:+|nuORF ENST00000576601.1_1_16:10972846-10989199:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.1903381347656 2 405.18978 808.365007 NaN NaN NaN NaN NaN NaN NaN 74.676 1 68.501 68.001 69.001 -6.1757 0 0 0 0.97348 1 48824 48824 5.7604 0 1 66213 15525 44080 45078 77284 77284 -0.04684126045538051 TVCHLFVTSMK 11 Unmodified _TVCHLFVTSMK_ 0 0 0 REV__ENSG00000170044|ENST00000466937|ZPLD1 REV__ENSG00000170044|ENST00000466937|ZPLD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 633.3237915039062 2 633.322676 1264.6308 NaN NaN NaN NaN NaN NaN NaN 86.637 1 86.637 86.137 87.137 0 0 0 0 0.89305 1 47985 47985 7.609 0 1 + 66214 22441 44081 45079 77285 77285 0.00906956962080585 TVCKPNLVCI 10 Unmodified _TVCKPNLVCI_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MSMS AL20221201_MKP_PDAC_01 4 545.2566528320312 2 545.293388 1088.57222 NaN NaN NaN NaN NaN NaN NaN 46.874 1 41.793 41.293 42.293 -5.0805 0 0 0 0.4346 1 29029 29029 34.402 6.7729 1 + 66215 23527 44082 45080 77286 77286 0.03147900387602931 TVDDFWQMVWQ 11 Unmodified _TVDDFWQMVWQ_ 0 0 0 ENST00000549107.5_1_12:71032966-71078579:-|nuORF;ENST00000548220.1_1_12:71054984-71148538:-|nuORF;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR ENST00000549107.5_1_12:71032966-71078579:-|nuORF ENST00000549107.5_1_12:71032966-71078579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 727.8260498046875 2 727.824095 1453.63364 0.36889 0.00026849 1.4791 0.0010765 1.848 0.001345 728.3266191964431 52.428 0.29043 51.994 51.83 52.12 -0.43367 26 14 2 0 0 0 0.63851 1 28288 28288 9.3831 4.0862 1 11095000 66216 6250 44083 45081 77287 77287 -0.07503496379422359 TVDEYCVFLL 10 Unmodified _TVDEYCVFLL_ 0 0 0 ENST00000398163.6_1_14:20793699-20793762:-|nuORF;ENST00000553516.5_1_14:20785919-20793762:-|nuORF;ENST00000437553.6_1_14:20784671-20794896:-|nuORF ENST00000398163.6_1_14:20793699-20793762:-|nuORF ENST00000398163.6_1_14:20793699-20793762:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.848876953125 2 601.294107 1200.57366 NaN NaN NaN NaN NaN NaN NaN 68.89 1 68.409 67.909 68.909 -0.48071 0 0 0 0.96627 1 37656 37656 4.3292 0 1 66217 12845 44084 45082 77288 77288 -0.018601870426437017 TVDHMEVVDP 10 Unmodified _TVDHMEVVDP_ 0 0 0 REV__ENSG00000087365|ENST00000322535|SF3B2 REV__ENSG00000087365|ENST00000322535|SF3B2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7408447265625 2 571.263339 1140.51212 0.24724 0.00014124 -0.68325 -0.00039032 -0.43601 -0.00024908 571.2625710724001 51.79 0.3257 51.79 51.561 51.886 0 17 14 2 0 0 0 0.22149 1 28657 28657 10.074 0 1 4633400 + 66218 17788 44085 45083 77289 77289 -0.05251118741898608 TVDLSHYQFWT 11 Unmodified _TVDLSHYQFWT_ 0 0 0 REV__nc|ENSG00000156096|P06133-2|UGT2B4 REV__nc|ENSG00000156096|P06133-2|UGT2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5569763183594 3 466.222582 1395.64592 0.6137 0.00028612 0.077086 3.5939E-05 0.69078 0.00032206 466.2226890470178 73.526 0.35867 73.051 72.871 73.229 -0.47588 39 15 3 0 0 0 0.73237 1 40194 40194 1.2148 0 1 1312800 + 66219 21309 44086 45084 77290 77290 -0.036081366447206165 TVDLSHYQFWT 11 Unmodified _TVDLSHYQFWT_ 0 0 0 REV__nc|ENSG00000156096|P06133-2|UGT2B4 REV__nc|ENSG00000156096|P06133-2|UGT2B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.5569763183594 3 466.222582 1395.64592 0.6137 0.00028612 0.077086 3.5939E-05 0.69078 0.00032206 466.2226890470178 73.526 0.35867 73.051 72.871 73.229 -0.47588 39 15 3 0 0 0 0.30496 1 40194 40194 1.2148 0.10508 1 1312800 + 66220 21309 44086 45084 77291 77291 -0.036081366447206165 TVDTSKLVF 9 Unmodified _TVDTSKLVF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2818603515625 2 505.281857 1008.54916 -0.17336 -8.7594E-05 0.32841 0.00016594 0.15505 7.8344E-05 505.2820208372196 54.131 0.23648 53.665 53.547 53.784 -0.46664 20 11 2 0 0 0 0.094149 1 29313 29313 34.402 0 1 2920800 66221 1675 44087 45085 77292 77292 0.0452292086615671 TVDWNEWRDYF 11 Unmodified _TVDWNEWRDYF_ 0 0 0 nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000085491|ENST00000565488|SLC25A24 nc|ENSG00000085491|Q6NUK1-2|SLC25A24 nc|ENSG00000085491|Q6NUK1-2|SLC25A24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.8942565917969 3 510.893124 1529.65754 NaN NaN NaN NaN NaN NaN NaN 19.627 1 19.627 19.127 20.127 0 0 0 0 0.94301 1 9828 9828 0.094841 0 1 66222 16060 44088 45086 77293 77293 -0.08609939621396734 TVEAALPPY 9 Unmodified _TVEAALPPY_ 0 0 0 REV__ENST00000492598.1_1_1:17302954-17303350:-|nuORF REV__ENST00000492598.1_1_1:17302954-17303350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5037231445312 1 960.503674 959.496398 0.17308 0.00016624 -0.4036 -0.00038766 -0.23052 -0.00022141 960.5030643433346 59.324 0.81398 59.324 58.902 59.716 0 60 35 2 0 0 0 0.18465 1 33210 33210 24.674 6.5389 1 2581800 + 66223 27873 44089 45087 77294 77294 0.015029628033289555 TVEEAEAA 8 Unmodified _TVEEAEAA_ 0 0 0 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2 nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.1896057128906 2 410.190165 818.365778 NaN NaN NaN NaN NaN NaN NaN 32.418 1 32.418 31.918 32.918 0 0 0 0 0.95607 1 16934 16934 9.3474 0 1 66224 16301 44090 45088 77295 77295 -0.05067052915524073 TVEEHLWF 8 Unmodified _TVEEHLWF_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF nc|ENSG00000107331|Q9BZC7|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7597045898438 2 530.758549 1059.50255 NaN NaN NaN NaN NaN NaN NaN 84.341 1 83.841 83.341 84.341 -0.49961 0 0 0 0.97444 1 46155 46155 5.2307 0 1 66225 2490 44091 45089 77296 77296 -0.024825189651664914 TVEERVINEEY 11 Unmodified _TVEERVINEEY_ 0 0 0 ENSG00000102054|ENST00000380087|RBBP7;nc|ENSG00000102054|Q16576-2|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 ENSG00000102054|ENST00000380087|RBBP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8356323242188 2 690.835714 1379.65687 -0.047434 -3.2769E-05 0.65638 0.00045345 0.60895 0.00042068 690.8361716107164 37.303 0.16817 37.303 37.201 37.369 0 17 8 3 0 0 0 0.15252 1 19832 19832 36.395 13.659 1 3798800 66226 2015 44092 45090 77297 77297 -0.017767790610605516 TVEKQPCSF 9 Unmodified _TVEKQPCSF_ 0 0 0 REV__ENST00000576239.5_1_17:673624-673741:-|nuORF REV__ENST00000576239.5_1_17:673624-673741:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.7272338867188 2 519.749867 1037.48518 1.5233 0.00079173 1.0281 0.00053436 2.5514 0.0013261 519.7505250131543 58.677 0.31319 52.603 52.421 52.734 -6.0745 27 17 2 0 0 0 0.18882 1 37584 37584 15.847 4.2069 1 10713000 + 66227 29022 44093 45091 77298 77298 -0.03206182562462345 TVELMFTFFR 10 Unmodified _TVELMFTFFR_ 0 0 0 ENST00000402711.6_1_2:42490436-42510024:+|nuORF ENST00000402711.6_1_2:42490436-42510024:+|nuORF ENST00000402711.6_1_2:42490436-42510024:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8883666992188 3 430.889886 1289.64783 NaN NaN NaN NaN NaN NaN NaN 62.769 1 62.747 62.247 63.247 -0.021614 0 0 0 0.99146 1 34314 34314 1.5923 1.0863 1 66228 12894 44094 45092 77299 77299 0.014592008395311495 TVEPDMWGSV 10 Unmodified _TVEPDMWGSV_ 0 0 0 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 ENSG00000198286|ENST00000396946|CARD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2540283203125 2 560.752607 1119.49066 0.35843 0.00020099 0.69614 0.00039036 1.0546 0.00059135 561.2543276760397 76.012 0.43501 76.012 75.791 76.226 0 62 19 4 0 0 0 0.62068 1 42296 42296 10.074 1.3285 1 6281400 66229 10073 44095 45093 77300 77300 -0.06430503770639007 TVESLEQYLL 10 Unmodified _TVESLEQYLL_ 0 0 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8161010742188 2 597.816261 1193.61797 0.016968 1.0144E-05 0.45414 0.00027149 0.47111 0.00028163 597.8164623379829 83.977 0.3209 83.977 83.792 84.112 0 37 15 3 0 0 0 0.66569 1 46608 46608 6.7232 0.99131 1 1681800 66230 1608 44096 45094 77301 77301 0.02890540375187811 TVEVLLPD 8 Unmodified _TVEVLLPD_ 0 0 0 nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000100012|ENST00000215812|SEC14L3;nc|ENSG00000100012|Q9UDX4-3|SEC14L3;ENST00000320982.3_1_22:30886096-30887579:-|nuORF;nc|ENSG00000100003|O76054-5|SEC14L2;ENST00000321205.9_1_22:30886096-30899699:-|nuORF;ENSG00000100003|ENST00000615189|SEC14L2;ENSG00000133488|ENST00000255858|SEC14L4;ENSG00000214491|ENST00000402034|SEC14L6 nc|ENSG00000100012|Q9UDX4-2|SEC14L3;ENSG00000214491|ENST00000402034|SEC14L6 nc|ENSG00000100012|Q9UDX4-2|SEC14L3 MSMS AL20221201_MKP_PDAC_01 4 443.2501831054688 2 443.250026 884.485499 NaN NaN NaN NaN NaN NaN NaN 84.698 1 78.523 78.023 79.023 -6.1757 0 0 0 0.25484 1 55741 55741 74.396 3.6808 1 66231 1736;10495 44097 45095 77302 77302 0.03863560429056179 TVEVPVLK 8 Unmodified _TVEVPVLK_ 0 0 0 nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1 nc|ENSG00000040275|Q96EA4-2|SPDL1 nc|ENSG00000040275|Q96EA4-2|SPDL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.5455932617188 1 884.545145 883.537869 0.93863 0.00083026 0.56016 0.00049548 1.4988 0.0013257 884.545425989854 64.149 0.39756 57.973 57.752 58.15 -6.1757 33 20 2 0 0 0 0.18881 2 41547 41422;41547 74.396 14.007 1 13674000 66232 648 44098 45096 77303;77304 77304 0.09144143562650697 TVEVPVLK 8 Unmodified _TVEVPVLK_ 0 0 0 nc|ENSG00000040275|Q96EA4-2|SPDL1;nc|ENSG00000040275|Q96EA4-3|SPDL1;ENST00000507232.5_1_5:169018105-169028825:+|nuORF;ENSG00000040275|ENST00000265295|SPDL1 nc|ENSG00000040275|Q96EA4-2|SPDL1 nc|ENSG00000040275|Q96EA4-2|SPDL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 884.545145 883.537869 0.28761 0.0002544 -0.55209 -0.00048834 -0.26448 -0.00023394 884.5451467334502 57.95 0.21843 57.95 57.817 58.036 0 0.0032118 -0.00090481 NaN 74.396 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 960560 66233 648 44098 45096 0.09144143562650697 TVFARRFHCWF 11 Unmodified _TVFARRFHCWF_ 0 0 0 REV__LEMD3|p.R623H|1|0.17|ENSG00000174106|chr12:65238761-65238761|G/A|missense_variant REV__LEMD3|p.R623H|1|0.17|ENSG00000174106|chr12:65238761-65238761|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.1878662109375 4 368.186937 1468.71864 -0.56865 -0.00020937 0.21064 7.7554E-05 -0.35801 -0.00013181 368.43765768153486 14.148 0.14002 14.117 14.033 14.173 -0.030867 89 56 3 0 0 0 0.7453 1 6832 6832 0 0 1 1125400 + 66234 29450 44099 45097 77305 77305 0.00303338667731623 TVFDLVEEY 9 Unmodified _TVFDLVEEY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENST00000537598.5_1_12:69080821-69103022:+|nuORF nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7689819335938 2 557.76878 1113.52301 0.42183 0.00023528 0.28938 0.00016141 0.71121 0.00039669 557.7688446477342 81.809 0.57378 81.809 81.593 82.167 0 111 32 5 0 0 0 0.095405 2 45411 45411;45510 34.102 10.954 1 38792000 66235 2795 44100 45098 77306;77307 77306 -0.029213930960168 TVFDLVEEY 9 Unmodified _TVFDLVEEY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENST00000537598.5_1_12:69080821-69103022:+|nuORF nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7710571289062 2 557.76878 1113.52301 0.81765 0.00045606 0.083964 4.6833E-05 0.90162 0.00050289 557.7687104198922 82.359 0.59743 81.863 81.629 82.227 -0.4952 44 18 3 0 0 0 0.026094 2 45063 45063;45164 57.471 21.427 1 6829800 66236 2795 44100 45098 77308;77309 77308 -0.029213930960168 TVFDLVEEY 9 Unmodified _TVFDLVEEY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENST00000537598.5_1_12:69080821-69103022:+|nuORF nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.768798828125 2 557.76878 1113.52301 2.135 0.0011908 -0.53944 -0.00030088 1.5956 0.00088995 557.7685740993459 81.868 0.34659 81.928 81.659 82.006 0.059929 23 13 2 0 0 0 0.023164 1 45227 45227 60.39 24.345 1 4699700 66237 2795 44100 45098 77310 77310 -0.029213930960168 TVFDLVEEY 9 Unmodified _TVFDLVEEY_ 0 0 0 nc|ENSG00000111581|P57740-2|NUP107;ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;ENST00000537598.5_1_12:69080821-69103022:+|nuORF nc|ENSG00000111581|P57740-2|NUP107 nc|ENSG00000111581|P57740-2|NUP107 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7698364257812 2 557.76878 1113.52301 1.0472 0.0005841 0.80199 0.00044733 1.8492 0.0010314 557.769123365817 91.458 1.1036 85.282 84.703 85.806 -6.1757 163 62 4 0 0 0 0.016184 5 60499 60243;60372;60499;60621;60746 67.344 31.3 1 173860000 66238 2795 44100 45098 77311;77312;77313;77314;77315 77313 -0.029213930960168 TVFDQHQEYF 10 Unmodified _TVFDQHQEYF_ 0 0 0 DNAJA3|p.P208H|1|0.04|ENSG00000103423|chr16:4441568-4441568|C/A|missense_variant DNAJA3|p.P208H|1|0.04|ENSG00000103423|chr16:4441568-4441568|C/A|missense_variant DNAJA3|p.P208H|1|0.04|ENSG00000103423|chr16:4441568-4441568|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.2927856445312 2 657.293485 1312.57242 -0.070649 -4.6437E-05 -3.6035 -0.0023685 -3.6741 -0.002415 657.2911031342136 65.668 0.2152 65.668 65.503 65.718 0 12 8 2 0 0 0 0.69377 1 36594 36594 3.5965 0.60125 1 751600 66239 237 44101 45099 77316 77316 -0.07136685087198202 TVFEDHWAP 9 Unmodified _TVFEDHWAP_ 0 0 0 REV__ENSG00000171132|ENST00000306156|PRKCE REV__ENSG00000171132|ENST00000306156|PRKCE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2540893554688 2 551.253631 1100.49271 NaN NaN NaN NaN NaN NaN NaN 13.598 1 13.598 13.098 14.098 0 0 0 0 0.85737 1 6434 6434 0.6015 0 1 + 66240 22534 44102 45100 77317 77317 -0.05351706970554915 TVFEDLYDY 9 Unmodified _TVFEDLYDY_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;ENST00000517601.1_1_8:71550856-71556444:-|nuORF ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7594604492188 2 582.758412 1163.50227 0.54998 0.00032051 0.59793 0.00034845 1.1479 0.00066895 582.7586390708303 73.651 0.33801 73.651 73.469 73.807 0 43 14 4 0 0 0 0.18144 2 40958 40958;41061 34.102 25.509 1 4757100 66241 5865 44103 45101 77318;77319 77318 -0.072939834756653 TVFEDLYDY 9 Unmodified _TVFEDLYDY_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;ENST00000517601.1_1_8:71550856-71556444:-|nuORF ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7594604492188 2 582.758412 1163.50227 0.65463 0.00038149 -1.5409 -0.00089798 -0.88628 -0.00051649 582.7571738362553 74.174 0.26374 73.698 73.504 73.768 -0.47588 20 10 3 0 0 0 0.4887 1 40567 40567 12.532 5.8084 1 1408800 66242 5865 44103 45101 77320 77320 -0.072939834756653 TVFEDLYDY 9 Unmodified _TVFEDLYDY_ 0 0 0 ENSG00000147592|ENST00000276590|LACTB2;ENST00000517601.1_1_8:71550856-71556444:-|nuORF ENSG00000147592|ENST00000276590|LACTB2 ENSG00000147592|ENST00000276590|LACTB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.759033203125 2 582.758412 1163.50227 0.43746 0.00025493 0.82493 0.00048073 1.2624 0.00073567 582.7590070988081 82.389 0.56828 76.214 75.986 76.554 -6.1757 74 31 3 0 0 0 0.078314 3 54166 54034;54166;54301 42.095 19.358 1 32234000 66243 5865 44103 45101 77321;77322;77323 77322 -0.072939834756653 TVFEHTFHV 9 Unmodified _TVFEHTFHV_ 0 0 0 nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 nc|ENSG00000106105|P41250-2|GARS1 nc|ENSG00000106105|P41250-2|GARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8533935546875 3 372.853941 1115.53999 -0.005702 -2.126E-06 -0.25733 -9.5947E-05 -0.26303 -9.8073E-05 372.85347595547125 45.412 0.17333 45.088 45.022 45.195 -0.32425 16 10 2 0 0 0 0.038285 1 24276 24276 45.7 28.257 1 18018000 66244 2401 44104 45102 77324 77324 -0.013154276995237524 TVFEHTFHV 9 Unmodified _TVFEHTFHV_ 0 0 0 nc|ENSG00000106105|P41250-2|GARS1;ENSG00000106105|ENST00000389266|GARS1 nc|ENSG00000106105|P41250-2|GARS1 nc|ENSG00000106105|P41250-2|GARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8545227050781 3 372.853941 1115.53999 1.645 0.00061336 -0.3649 -0.00013605 1.2802 0.00047731 372.85385936452315 50.461 0.40507 44.922 44.663 45.068 -5.5391 58 25 3 0 0 0 0.023164 1 31562 31562 45.7 32.085 1 33222000 66245 2401 44104 45102 77325 77325 -0.013154276995237524 TVFFILRKK 9 Unmodified _TVFFILRKK_ 0 0 0 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 ENSG00000118402|ENST00000369816|ELOVL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.58203125 3 384.581493 1150.72265 1.3368 0.00051412 0.89986 0.00034607 2.2367 0.00086019 384.58174680796367 38.038 0.6229 33.669 33.487 34.11 -4.3689 99 37 4 0 0 0 0.59218 1 22329 22329 0.96228 0 1 69579000 66246 3368 44105 45103 77326 77326 0.15331751433086538 TVFFLDTF 8 Unmodified _TVFFLDTF_ 0 0 0 REV__nc|ENSG00000262628|P47884|OR1D4 REV__nc|ENSG00000262628|P47884|OR1D4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2527770996094 2 495.252569 988.490584 0.17153 8.4953E-05 -1.1411 -0.00056512 -0.96953 -0.00048016 495.2519984112051 39.762 0.25164 39.762 39.7 39.952 0 21 12 2 0 0 0 0.80232 1 21437 21437 5.2307 0 1 1999900 + 66247 23402 44106 45104 77327 77327 -0.004121357083363364 TVFFTMRS 8 Unmodified _TVFFTMRS_ 0 0 0 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 REV__nc|ENSG00000187258|Q6W5P4-3|NPSR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7492370605469 2 494.74967 987.484787 NaN NaN NaN NaN NaN NaN NaN 25.394 1 25.394 24.894 25.894 0 0 0 0 0.97444 1 13017 13017 4.3292 0 1 + 66248 29858 44107 45105 77328 77328 -0.009455574916501064 TVFGSLDCYH 10 Unmodified _TVFGSLDCYH_ 0 0 0 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2530517578125 2 571.252774 1140.491 0.018139 1.0362E-05 -0.42848 -0.00024477 -0.41034 -0.00023441 571.2526046285716 51.364 0.34288 50.951 50.738 51.081 -0.41351 38 17 3 0 0 0 0.54684 2 27733 27611;27733 13.906 3.8321 1 10094000 66249 10294 44108 45106 77329;77330 77330 -0.07363084050803081 TVFGSLDCYH 10 Unmodified _TVFGSLDCYH_ 0 0 0 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 ENSG00000204518|ENST00000376221|AADACL4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.252774 1140.491 0.26239 0.00014989 0.24789 0.00014161 0.51028 0.0002915 571.2529130968076 50.986 0.14437 50.932 50.862 51.007 -0.053871 -0.009515 0.00060572 NaN 13.906 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1797100 66250 10294 44108 45106 -0.07363084050803081 TVFGSLIIGY 10 Unmodified _TVFGSLIIGY_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENST00000433580.1_1_1:209441145-209441361:-|nuORF;ENST00000442175.1_1_X:41958063-41958324:-|nuORF;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3 ENST00000513781.5_1_17:46970480-46973128:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3013916015625 2 535.30005 1068.58555 1.9446 0.001041 0.53614 0.00028699 2.4808 0.001328 535.3002337248192 94.094 0.4399 94.109 93.883 94.323 0.014244 38 16 3 0 0 0 0.19662 1 52282 52282 34.102 1.797 1 2187300 66251 6632;4700;6331 44109 45107 77331 77331 0.05399797762856906 TVFGSLIIGY 10 Unmodified _TVFGSLIIGY_ 0 0 0 ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1;ENST00000433580.1_1_1:209441145-209441361:-|nuORF;ENST00000442175.1_1_X:41958063-41958324:-|nuORF;ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3;ENST00000497075.5_1_2:176043783-176046391:-|nuORF ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENSG00000135390|ENST00000394349|ATP5MC2;ENSG00000154518|ENST00000284727|ATP5MC3 ENST00000513781.5_1_17:46970480-46973128:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3009643554688 2 535.30005 1068.58555 1.2014 0.00064309 -1.8427 -0.00098642 -0.64139 -0.00034333 535.3005054044617 100.19 0.26842 94.01 93.804 94.072 -6.1757 34 16 4 0 0 0 0.037795 1 66972 66972 64.236 30.134 1 40178000 66252 6632;4700;6331 44109 45107 77332 77332 0.05399797762856906 TVFLRLTA 8 Unmodified _TVFLRLTA_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 920.55859375 1 920.556379 919.549102 -0.3262 -0.00030028 -0.14092 -0.00012972 -0.46712 -0.00043001 920.5573679001038 104.51 0.032143 104.46 104.44 104.47 -0.048737 4 2 2 0 0 0 0.80992 1 58034 58034 0.69038 0 1 3568200 + 66253 21279 44110 45108 77333 77333 0.08610965656771441 TVFLRLTA 8 Unmodified _TVFLRLTA_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.7814636230469 2 460.781828 919.549102 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.48 103.98 104.98 -0.048737 0 0 0 0.97444 1 58036 58036 0.69038 0 1 + 66254 21279 44110 45108 77334 77334 0.08610965656771441 TVFLRLTA 8 Unmodified _TVFLRLTA_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 920.556379 919.549102 -0.3262 -0.00030028 -0.14092 -0.00012972 -0.46712 -0.00043001 920.5573679001038 104.51 0.032143 104.46 104.44 104.47 -0.048737 0 0 NaN 0.69038 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 3568200 + 66255 21279 44110 45108 0.08610965656771441 TVFPMDKMI 9 Unmodified _TVFPMDKMI_ 0 0 0 ENSG00000279514|ENST00000623907|OR4C16 ENSG00000279514|ENST00000623907|OR4C16 ENSG00000279514|ENST00000623907|OR4C16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7717895507812 2 541.274664 1080.53477 -0.23384 -0.00012657 4.2961 0.0023254 4.0623 0.0021988 541.2782040301273 53.855 0.34409 53.788 53.637 53.981 -0.066936 44 19 4 0 0 0 0.30562 1 29291 29291 16.942 5.302 1 5023000 66256 10942 44111 45109 77335 77335 -0.002271908780130616 TVFQKIWLTAL 11 Unmodified _TVFQKIWLTAL_ 0 0 0 ENSG00000174669|ENST00000357440|SLC29A2 ENSG00000174669|ENST00000357440|SLC29A2 ENSG00000174669|ENST00000357440|SLC29A2 MSMS AL20221201_MKP_PDAC_01 4 440.5955505371094 3 440.595579 1318.76491 NaN NaN NaN NaN NaN NaN NaN 22.968 1 20.189 19.689 20.689 -2.7784 0 0 0 0.93648 1 12395 12395 5.0475 2.2042 1 66257 8446 44112 45110 77336 77336 0.11827682050807198 TVFREVVSF 9 Unmodified _TVFREVVSF_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2953491210938 2 542.295299 1082.57605 0.49501 0.00026844 1.2645 0.00068575 1.7595 0.00095419 542.296217183756 62.337 0.63467 61.85 61.426 62.061 -0.48764 55 29 3 0 0 0 0.011291 1 33996 33996 76.825 42.423 1 5815800 66258 7596 44113 45111 77337 77337 0.038060294773458736 TVFREVVSF 9 Unmodified _TVFREVVSF_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.294921875 2 542.295299 1082.57605 0.28105 0.00015241 0.54784 0.00029709 0.82889 0.00044951 542.2954710372601 61.973 0.37108 61.94 61.711 62.082 -0.032787 38 18 3 0 0 0 0.015688 1 33810 33810 67.838 33.436 1 12030000 66259 7596 44113 45111 77338 77338 0.038060294773458736 TVFREVVSF 9 Unmodified _TVFREVVSF_ 0 0 0 nc|ENSG00000167280|Q8NFI3-2|ENGASE;nc|ENSG00000167280|Q8NFI3-3|ENGASE;ENSG00000167280|ENST00000579016|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE nc|ENSG00000167280|Q8NFI3-2|ENGASE MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.295299 1082.57605 0.27433 0.00014877 2.5422 0.0013786 2.8165 0.0015274 542.2975197622945 61.63 0.19641 61.597 61.514 61.711 -0.032787 -0.12635 0.0012083 NaN 76.825 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2416000 66260 7596 44113 45111 0.038060294773458736 TVFVSCVCVF 10 Unmodified _TVFVSCVCVF_ 0 0 0 ENST00000458044.1_1_1:235097160-235098750:-|nuORF ENST00000458044.1_1_1:235097160-235098750:-|nuORF ENST00000458044.1_1_1:235097160-235098750:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.514404296875 3 368.513651 1102.51912 NaN NaN NaN NaN NaN NaN NaN 76.455 1 75.975 75.475 76.475 -0.47945 0 0 0 0.92825 1 41851 41851 3.5871 0.26742 1 66261 13623 44114 45112 77339 77339 -0.028034773950594172 TVFWKCDMQKL 11 Unmodified _TVFWKCDMQKL_ 0 0 0 ENSG00000100314|ENST00000216144|CABP7 ENSG00000100314|ENST00000216144|CABP7 ENSG00000100314|ENST00000216144|CABP7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7581176757812 3 466.901798 1397.68356 0.22743 0.00010619 -0.0077322 -3.6102E-06 0.2197 0.00010258 466.90178112990213 55.17 0.5129 54.692 54.349 54.861 -0.47798 65 24 4 0 0 0 0.30452 1 29963 29963 1.3296 0 1 5050600 66262 1792 44115 45113 77340 77340 0.0006291502488693368 TVGDLLPEV 9 Unmodified _TVGDLLPEV_ 0 0 0 nc|ENSG00000008226|Q9Y238-3|DLEC1;ENSG00000008226|ENST00000308059|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.7616577148438 2 471.760758 941.506963 0.15229 7.1846E-05 0.87803 0.00041422 1.0303 0.00048607 471.7613342628849 77.036 0.45583 70.86 70.661 71.117 -6.1757 34 25 2 0 0 0 0.0090851 2 50469 50349;50469 85.357 0 1 20511000 66263 379 44116 45114 77341;77342 77342 0.033869454577597935 TVGDLLPEV 9 Unmodified _TVGDLLPEV_ 0 0 0 nc|ENSG00000008226|Q9Y238-3|DLEC1;ENSG00000008226|ENST00000308059|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 nc|ENSG00000008226|Q9Y238-3|DLEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.5162353515625 1 942.514239 941.506963 -0.30057 -0.00028329 -2.5353 -0.0023895 -2.8359 -0.0026728 942.5118958868061 77.052 0.39469 70.876 70.739 71.134 -6.1757 38 22 2 0 0 0 0.012148 1 50496 50496 74.423 0 1 25865000 66264 379 44116 45114 77343 77343 0.033869454577597935 TVGDNRTY 8 Unmodified _TVGDNRTY_ 0 0 0 nc|ENSG00000152894|Q15262|PTPRK;ENSG00000152894|ENST00000368226|PTPRK;nc|ENSG00000152894|Q15262-3|PTPRK;nc|ENSG00000152894|Q15262-4|PTPRK;ENST00000524534.5_1_6:128384662-128841530:-|nuORF;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK;ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF nc|ENSG00000152894|Q15262|PTPRK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2239379882812 2 463.222331 924.430109 NaN NaN NaN NaN NaN NaN NaN 49.522 1 49.473 48.973 49.973 -0.048824 0 0 0 0.94061 1 26757 26757 12.532 3.1841 1 66265 6218;14777;14900 44117 45115 77344 77344 -0.03512853038716912 TVGEFAGPEI 10 Unmodified _TVGEFAGPEI_ 0 0 0 REV__ENSG00000106819|ENST00000375544|ASPN REV__ENSG00000106819|ENST00000375544|ASPN MSMS AL20221201_MKP_PDAC_01 4 510.2555847167969 2 510.25584 1018.49713 NaN NaN NaN NaN NaN NaN NaN 87.974 1 81.799 81.299 82.299 -6.1757 0 0 0 0.51756 1 58025 58025 25.399 3.6527 1 + 66266 18539 44118 45116 77345 77345 -0.0113824254760857 TVGEMERDWYR 11 Unmodified _TVGEMERDWYR_ 0 0 0 ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 721.328125 2 721.330076 1440.6456 0.028773 2.0755E-05 -2.8578 -0.0020614 -2.829 -0.0020406 721.327652296637 54.267 0.25703 53.801 53.646 53.904 -0.46664 28 12 3 0 0 0 0.21511 1 29373 29373 31.268 5.2476 1 5212400 66267 15262 44119 45117 77346 77346 -0.05709879636219739 TVGEMERDWYR 11 Unmodified _TVGEMERDWYR_ 0 0 0 ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF ENST00000557615.5_1_14:23452173-23452236:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 721.330076 1440.6456 0.28376 0.00020469 -4.8062 -0.0034668 -4.5224 -0.0032621 721.3268736892312 53.64 0.2641 53.64 53.506 53.77 0 -0.08049 -0.0013532 NaN 31.268 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5523200 66268 15262 44119 45117 -0.05709879636219739 TVGINLFSI 9 Unmodified _TVGINLFSI_ 0 0 0 ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 ENSG00000144136|ENST00000272542|SLC20A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2796020507812 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 64.593 1 64.108 63.608 64.608 -0.48512 0 0 0 0.82396 1 35242 35242 4.756 0 1 66269 5587 44120 45118 77347 77347 0.06091242074330694 TVGINTFDY 9 Unmodified _TVGINTFDY_ 0 0 0 ENST00000496015.5_1_14:74755930-74759615:-|nuORF ENST00000496015.5_1_14:74755930-74759615:-|nuORF ENST00000496015.5_1_14:74755930-74759615:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.8037109375 2 515.248015 1028.48148 0.98857 0.00050936 2.1092 0.0010868 3.0977 0.0015961 515.7517581552177 54.45 0.22232 54.45 54.375 54.597 0 15 9 2 0 0 0 0.15672 1 30223 30223 26.884 3.7352 1 1178200 66270 14364 44121 45119 77348 77348 -0.03162529064661612 TVGISQFATI 10 Unmodified _TVGISQFATI_ 0 0 0 REV__ENSG00000009335|ENST00000348165|UBE3C REV__ENSG00000009335|ENST00000348165|UBE3C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2839965820312 2 518.787307 1035.56006 0.8314 0.00043132 -1.3323 -0.00069117 -0.50089 -0.00025986 518.7861526988754 66.043 0.45753 59.867 59.659 60.117 -6.1757 42 26 2 0 0 0 0.22327 1 42907 42907 9.3831 0.63772 1 16819000 + 66271 17032 44122 45120 77349 77349 0.04370323240414109 TVGKLIELL 9 Unmodified _TVGKLIELL_ 0 0 0 nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2537231445312 2 493.318243 984.621933 0.77901 0.0003843 -0.61544 -0.00030361 0.16358 8.0695E-05 493.3179613092477 75.742 0.24564 75.265 75.126 75.372 -0.47714 20 10 2 0 0 0 0.20727 1 41509 41509 7.9102 0 1 1624400 66272 475 44123 45121 77350 77350 0.12900674659567812 TVGPKQTMGK 10 Unmodified _TVGPKQTMGK_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MSMS AL20221201_MKP_PDAC_01 4 523.784423828125 2 523.786784 1045.55902 NaN NaN NaN NaN NaN NaN NaN 17.391 1 14.804 14.304 15.304 -2.5866 0 0 0 0.8671 1 9088 9088 9.3831 0.78985 1 66273 1034 44124 45122 77351 77351 0.03805785599865885 TVGPLVVY 8 Unmodified _TVGPLVVY_ 0 0 0 nc|ENSG00000007923|Q9NVH1-2|DNAJC11;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000472414.1_1_1:6698189-6705162:-|nuORF nc|ENSG00000007923|Q9NVH1-2|DNAJC11 nc|ENSG00000007923|Q9NVH1-2|DNAJC11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.4912719726562 1 847.492381 846.485105 0.92841 0.00078682 -1.1304 -0.00095802 -0.20201 -0.0001712 847.491946978844 72.008 0.16745 65.832 65.73 65.898 -6.1757 13 9 2 0 0 0 0.28922 1 47093 47093 56.541 20.075 1 13447000 66274 370 44125 45123 77352 77352 0.05572185499852367 TVGVHPYYHL 10 Unmodified _TVGVHPYYHL_ 0 0 0 REV__ENSG00000174279|ENST00000308618|EVX2 REV__ENSG00000174279|ENST00000308618|EVX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8742980957031 3 395.873224 1184.59784 0.22973 9.0945E-05 -0.42486 -0.00016819 -0.19513 -7.7246E-05 395.8729673922807 26.002 0.42414 23.051 22.857 23.281 -2.9511 75 27 4 0 0 0 0.42068 1 14183 14183 12.873 3.1084 1 62126000 + 66275 22781 44126 45124 77353 77353 0.012928342258874181 TVGYSERTY 9 Unmodified _TVGYSERTY_ 0 0 0 REV__ENSG00000213160|ENST00000392647|KLHL23 REV__ENSG00000213160|ENST00000392647|KLHL23 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7951049804688 2 538.256371 1074.49819 0.39424 0.0002122 3.4653 0.0018652 3.8595 0.0020774 538.2590244632433 58.172 0.25737 58.172 58.058 58.316 0 21 9 3 0 0 0 0.19205 1 32381 32381 14.838 6.9281 1 1188300 + 66276 24275 44127 45125 77354 77354 -0.03608028178700806 TVHGRRSG 8 Unmodified _TVHGRRSG_ 0 0 0 REV__ENST00000598362.1_1_19:35504529-35505380:+|nuORF REV__ENST00000598362.1_1_19:35504529-35505380:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 435.2379760742188 2 435.23865 868.462747 NaN NaN NaN NaN NaN NaN NaN 45.261 1 40.306 39.806 40.806 -4.9549 0 0 0 0.95973 1 27751 27751 8.5933 0 1 + 66277 17840 44128 45126 77355 77355 0.023253988748138 TVHGVTQAF 9 Unmodified _TVHGVTQAF_ 0 0 0 nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF nc|ENSG00000006015|Q96EN9-3|REX1BD nc|ENSG00000006015|Q96EN9-3|REX1BD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.250732421875 2 480.250892 958.48723 -0.40402 -0.00019403 0.16283 7.8199E-05 -0.24119 -0.00011583 480.2508904024527 33.911 0.27897 33.911 33.765 34.044 0 29 13 3 0 0 0 0.008678 1 17807 17807 88.904 40.558 1 7987300 66278 16010 44129 45127 77356 77356 0.006326142376565258 TVHGVTQAF 9 Unmodified _TVHGVTQAF_ 0 0 0 nc|ENSG00000006015|Q96EN9-3|REX1BD;nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF nc|ENSG00000006015|Q96EN9-3|REX1BD nc|ENSG00000006015|Q96EN9-3|REX1BD MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2510986328125 2 480.250892 958.48723 0.80722 0.00038767 -0.57146 -0.00027445 0.23576 0.00011322 480.25071057889323 38.298 0.37252 33.929 33.765 34.138 -4.3689 42 22 3 0 0 0 0.00856 3 22519 22519;22551;22690 100.37 49.516 1 28817000 66279 16010 44129 45127 77357;77358;77359 77357 0.006326142376565258 TVHHRIHV 8 Unmodified _TVHHRIHV_ 0 0 0 ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000167380|ENST00000337433|ZNF226 ENST00000588883.5_1_19:44679604-44681824:+|nuORF ENST00000588883.5_1_19:44679604-44681824:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 998.5706176757812 1 998.564258 997.556982 0.61784 0.00061695 -0.18616 -0.00018589 0.43168 0.00043106 998.5674081833488 32.652 0.11766 28.795 28.715 28.832 -3.8562 6 5 2 0 0 0 0.80676 1 18642 18642 2.5775 0 1 3624900 66280 7605 44130 45128 77360 77360 0.058105376969251665 TVHNDSDDTL 10 Unmodified _TVHNDSDDTL_ 0 0 0 nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B nc|ENSG00000138182|Q96Q89-3|KIF20B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7424926757812 2 558.743825 1115.4731 -0.093442 -5.221E-05 -4.42 -0.0024696 -4.5134 -0.0025218 558.741537953795 56.074 0.21471 56.074 55.969 56.184 0 22 9 4 0 0 0 0.60623 1 31172 31172 10.824 2.9138 1 3613900 66281 5031 44131 45129 77361 77361 -0.08002127771942469 TVHSPHKFA 9 Unmodified _TVHSPHKFA_ 0 0 0 REV__nc|ENSG00000256771|O75346-2|ZNF253 REV__nc|ENSG00000256771|O75346-2|ZNF253 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7507934570312 2 512.272158 1022.52976 0.18842 9.6524E-05 1.6177 0.0008287 1.8061 0.00092522 512.2754439568812 46.992 0.3107 46.992 46.901 47.212 0 24 14 2 0 0 0 0.20727 1 25753 25753 7.9102 0 1 3169600 + 66282 24557 44132 45130 77362 77362 0.01940009365887363 TVHYSGVVI 9 Unmodified _TVHYSGVVI_ 0 0 0 REV__ENST00000265085.9_1_5:173386035-173386122:+|nuORF REV__ENST00000265085.9_1_5:173386035-173386122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7689514160156 2 487.768917 973.523281 0.66999 0.0003268 0.14221 6.9364E-05 0.8122 0.00039616 487.76896047849795 67.571 0.65392 67.089 66.716 67.37 -0.48219 59 28 3 0 0 0 0.28047 1 37037 37037 18.135 2.2878 1 8308800 + 66283 25086 44133 45131 77363 77363 0.03546071414530161 TVIAAPYLIS 10 Unmodified _TVIAAPYLIS_ 0 0 0 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 REV__ENSG00000118873|ENST00000358951|RAB3GAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.235595703125 2 524.307875 1046.6012 0.59106 0.0003099 -0.12235 -6.4147E-05 0.46871 0.00024575 524.3078205114508 75.563 0.18977 75.086 75.023 75.212 -0.47714 12 8 2 0 0 0 0.22941 1 41357 41357 13.906 3.0821 1 666610 + 66284 19171 44134 45132 77364 77364 0.07976084279880524 TVIDLGISF 9 Unmodified _TVIDLGISF_ 0 0 0 ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2 ENSG00000108094|ENST00000374749|CUL2 ENSG00000108094|ENST00000374749|CUL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5363159179688 1 964.534975 963.527698 0.12611 0.00012163 1.5125 0.0014588 1.6386 0.0015805 964.5365372176011 99.807 0.11951 93.631 93.558 93.677 -6.1757 12 8 2 0 0 0 0.0095811 1 66569 66569 81.613 3.6287 1 20435000 66285 2546 44135 45133 77365 77365 0.044475358374370444 TVIDSQTHY 9 Unmodified _TVIDSQTHY_ 0 0 0 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2572021484375 2 532.256371 1062.49819 -0.34491 -0.00018358 0.95531 0.00050847 0.6104 0.00032489 532.2569033025065 26.967 0.22906 26.967 26.846 27.075 0 26 10 3 0 0 0 0.036857 1 13870 13870 51.63 18.844 1 6267500 66286 7508 44136 45134 77366 77366 -0.030560281787074928 TVIDSQTHY 9 Unmodified _TVIDSQTHY_ 0 0 0 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7615966796875 2 532.256371 1062.49819 0.85582 0.00045552 1.8026 0.00095945 2.6584 0.001415 532.2567833819003 31.042 0.12675 27.545 27.475 27.602 -3.497 7 5 2 0 0 0 0.044011 1 17570 17570 47.749 14.963 1 21099000 66287 7508 44136 45134 77367 77367 -0.030560281787074928 TVIENIHTI 9 Unmodified _TVIENIHTI_ 0 0 0 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 ENSG00000162402|ENST00000294383|USP24 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.25048828125 2 520.292756 1038.57096 0.37888 0.00019713 -0.87435 -0.00045492 -0.49547 -0.00025779 520.2920399185349 47.093 0.10919 47.093 47.062 47.171 0 5 4 2 0 0 0 0.17275 1 25806 25806 10.824 0 1 531460 66288 6854 44137 45135 77368 77368 0.053217256147036096 TVIEPLKGY 9 Unmodified _TVIEPLKGY_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2921447753906 2 510.292225 1018.5699 0.85509 0.00043634 -0.26025 -0.00013281 0.59483 0.00030354 510.2920346459006 47.734 0.54462 47.734 47.45 47.995 0 45 25 3 0 0 0 0.06294 2 26107 26107;26214 41.84 17.819 1 9998600 66289 853 44138 45136 77369;77370 77369 0.06135511245804537 TVIEPLKGY 9 Unmodified _TVIEPLKGY_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2911682128906 2 510.292225 1018.5699 NaN NaN NaN NaN NaN NaN NaN 47.969 1 47.617 47.117 48.117 -0.3526 0 0 0 0.16996 1 25727 25727 34.402 10.381 1 66290 853 44138 45136 77371 77371 0.06135511245804537 TVIEPLKGY 9 Unmodified _TVIEPLKGY_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MSMS AL20221201_MKP_PDAC_01 4 510.29052734375 2 510.292225 1018.5699 NaN NaN NaN NaN NaN NaN NaN 53.563 1 47.759 47.259 48.259 -5.8042 0 0 0 0.12343 1 33869 33869 39.95 5.548 1 66291 853 44138 45136 77372 77372 0.06135511245804537 TVIESYNATL 10 Unmodified _TVIESYNATL_ 0 0 0 ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENST00000518096.1_1_8:30209523-30210210:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7882690429688 2 555.787504 1109.56045 0.46289 0.00025727 0.82439 0.00045819 1.2873 0.00071546 555.7879669727253 92.69 0.43169 92.69 92.552 92.984 0 51 29 3 0 0 0 0.52888 1 51307 51307 14.838 0 1 811670 66292 14685 44139 45137 77373 77373 0.010056981696152434 TVIESYNATL 10 Unmodified _TVIESYNATL_ 0 0 0 ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENST00000518096.1_1_8:30209523-30210210:+|nuORF ENST00000518096.1_1_8:30209523-30210210:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.788818359375 2 555.787504 1109.56045 0.61852 0.00034377 1.2832 0.00071321 1.9018 0.001057 555.7882389495794 93.238 0.95133 92.78 92.56 93.511 -0.4574 124 43 6 0 0 0 0.31022 1 50858 50858 26.884 3.7352 1 14699000 66293 14685 44139 45137 77374 77374 0.010056981696152434 TVIFTSGL 8 Unmodified _TVIFTSGL_ 0 0 0 REV__CON__Streptavidin REV__CON__Streptavidin MSMS AL20221201_MKP_PDAC_01 4 419.2398681640625 2 419.239461 836.46437 NaN NaN NaN NaN NaN NaN NaN 50.362 1 44.822 44.322 45.322 -5.5391 0 0 0 0.97348 1 31582 31582 5.7604 0 1 + + 66294 16895 44140 45138 77375 77375 0.03959595120193171 TVIHHRVP 8 Unmodified _TVIHHRVP_ 0 0 0 ENSG00000106799|ENST00000374994|TGFBR1;nc|ENSG00000106799|P36897-2|TGFBR1 ENSG00000106799|ENST00000374994|TGFBR1 ENSG00000106799|ENST00000374994|TGFBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7828369140625 2 479.782693 957.550834 0.077697 3.7278E-05 0.042182 2.0238E-05 0.11988 5.7516E-05 479.78253492941997 52.337 0.22066 52.337 52.223 52.443 0 17 9 3 0 0 0 0.6895 1 28975 28975 18.135 1.0221 1 1443200 66295 2460 44141 45139 77376 77376 0.0703601946541994 TVIIIRSLV 9 Unmodified _TVIIIRSLV_ 0 0 0 ENST00000539508.5_1_9:13136054-13190160:-|nuORF;nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ ENST00000539508.5_1_9:13136054-13190160:-|nuORF ENST00000539508.5_1_9:13136054-13190160:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.3399047851562 2 507.33951 1012.66447 0.5638 0.00028604 0.32367 0.00016421 0.88747 0.00045025 507.3396373500966 78.943 0.29483 78.997 78.835 79.13 0.05497 28 11 3 0 0 0 0.07916 1 43575 43575 37.974 8.8924 1 4723400 66296 2481 44142 45140 77377 77377 0.15864069787812696 TVIKLAILY 9 Unmodified _TVIKLAILY_ 0 0 0 nc|ENSG00000145779|O95379-3|TNFAIP8;nc|ENSG00000145779|O95379-2|TNFAIP8;ENSG00000145779|ENST00000504771|TNFAIP8;ENST00000415806.2_1_5:118727135-118729073:+|nuORF;nc|ENSG00000145779|O95379-4|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 nc|ENSG00000145779|O95379-3|TNFAIP8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3358154296875 2 517.336436 1032.65832 1.1526 0.00059626 0.62937 0.0003256 1.7819 0.00092186 517.3368130704631 96.147 0.22648 89.971 89.877 90.104 -6.1757 27 13 3 0 0 0 0.01958 1 63700 63700 63.961 12.331 1 19932000 66297 5724 44143 45141 77378 77378 0.1432955155628406 TVIKPLVEY 9 Unmodified _TVIKPLVEY_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.31591796875 2 531.3157 1060.61685 0.5853 0.00031098 0.47007 0.00024976 1.0554 0.00056074 531.3155121067481 53.126 0.20168 53.126 53.02 53.221 0 16 8 2 0 0 0 0.091924 1 29437 29437 34.932 9.5328 1 2460100 66298 7592 44144 45142 77379 77379 0.0889637079694694 TVIKPLVEY 9 Unmodified _TVIKPLVEY_ 0 0 0 nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 nc|ENSG00000167258|Q9NYV4-3|CDK12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.3157348632812 2 531.3157 1060.61685 0.41903 0.00022264 -0.75066 -0.00039884 -0.33163 -0.0001762 531.3157313156667 53.648 0.25564 53.196 53.065 53.321 -0.45173 35 12 4 0 0 0 0.11784 1 29045 29045 31.268 5.869 1 6957100 66299 7592 44144 45142 77380 77380 0.0889637079694694 TVILEILME 9 Unmodified _TVILEILME_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3070678710938 2 530.801568 1059.58858 0.82659 0.00043876 0.38639 0.0002051 1.213 0.00064385 530.8018719319864 101.52 0.27003 95.34 95.125 95.395 -6.1757 31 13 4 0 0 0 0.091924 1 68065 68065 46.021 13.904 1 325890000 66300 6002 44145 45143 77381 77381 0.06117304825352221 TVINHDLFA 9 Unmodified _TVINHDLFA_ 0 0 0 REV__ENSG00000184113|ENST00000618236|CLDN5 REV__ENSG00000184113|ENST00000618236|CLDN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.272705078125 2 515.271824 1028.5291 -0.55702 -0.00028702 0.79304 0.00040863 0.23601 0.00012161 515.2721177553713 36.363 0.34166 36.113 35.952 36.293 -0.2497 28 15 2 0 0 0 0.38785 1 19050 19050 13.042 0 1 3932500 + 66301 23396 44146 45144 77382 77382 0.015971699261854155 TVIPNSHVY 9 Unmodified _TVIPNSHVY_ 0 0 0 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2717895507812 2 515.271824 1028.5291 0.46342 0.00023879 -0.55397 -0.00028545 -0.090551 -4.6658E-05 515.271385795105 36.163 0.30046 36.163 36.01 36.311 0 33 14 3 0 0 0 0.06294 1 19133 19133 41.84 13.353 1 20137000 66302 3282 44147 45145 77383 77383 0.01597169926208153 TVIPNSHVY 9 Unmodified _TVIPNSHVY_ 0 0 0 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2720336914062 2 515.271824 1028.5291 -0.55702 -0.00028702 0.79304 0.00040863 0.23601 0.00012161 515.2721177553713 36.363 0.34166 36.113 35.952 36.293 -0.2497 28 15 2 0 0 0 0.34999 1 19158 19158 14.838 3.198 1 3932500 66303 3282 44147 45145 77384 77384 0.01597169926208153 TVIPNSHVY 9 Unmodified _TVIPNSHVY_ 0 0 0 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 ENSG00000117133|ENST00000370654|RPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2740478515625 2 515.271824 1028.5291 0.094058 4.8465E-05 2.0868 0.0010753 2.1809 0.0011237 515.2724774802939 41.399 0.43859 36.791 36.547 36.985 -4.6079 64 28 3 0 0 0 0.039985 1 24780 24780 49.933 13.889 1 50206000 66304 3282 44147 45145 77385 77385 0.01597169926208153 TVIPRVYTY 9 Unmodified _TVIPRVYTY_ 0 0 0 ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165 ENST00000508561.5_1_4:56283240-56284276:+|nuORF ENST00000508561.5_1_4:56283240-56284276:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7906494140625 2 556.310949 1110.60735 0.49685 0.00027641 0.79424 0.00044184 1.2911 0.00071825 556.3112503063904 51.027 0.20086 50.614 50.518 50.718 -0.41351 21 9 3 0 0 0 0.17331 1 27531 27531 22.736 7.898 1 3481600 66305 4645 44148 45146 77386 77386 0.0564660251143323 TVIPRVYTY 9 Unmodified _TVIPRVYTY_ 0 0 0 ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165 ENST00000508561.5_1_4:56283240-56284276:+|nuORF ENST00000508561.5_1_4:56283240-56284276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.3115844726562 2 556.310949 1110.60735 1.0233 0.0005693 -0.33555 -0.00018667 0.6878 0.00038263 556.3108523990672 50.655 0.21822 50.601 50.49 50.708 -0.053871 23 10 3 0 0 0 0.018846 1 27392 27392 69.338 25.48 1 4092300 66306 4645 44148 45146 77387 77387 0.0564660251143323 TVIPRVYTY 9 Unmodified _TVIPRVYTY_ 0 0 0 ENST00000508561.5_1_4:56283240-56284276:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165 ENST00000508561.5_1_4:56283240-56284276:+|nuORF ENST00000508561.5_1_4:56283240-56284276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3114624023438 2 556.310949 1110.60735 0.65453 0.00036412 0.45671 0.00025407 1.1112 0.00061819 556.3114734022038 56.871 0.3693 50.894 50.687 51.056 -5.9769 36 21 2 0 0 0 0.0098373 1 36267 36267 87.258 34.99 1 29896000 66307 4645 44148 45146 77388 77388 0.0564660251143323 TVISGVTF 8 Unmodified _TVISGVTF_ 0 0 0 ENSG00000133962|ENST00000256343|CATSPERB;nc|ENSG00000133962|Q9H7T0-2|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2321472167969 2 412.231636 822.448719 1.3923 0.00057396 -0.612 -0.00025228 0.78032 0.00032167 412.2317739001287 21.522 0.25443 18.787 18.662 18.917 -2.7348 34 21 2 0 0 0 0.74163 1 11541 11541 13.508 0 1 4077900 66308 4545 44149 45147 77389 77389 0.03039308603149493 TVISGVTF 8 Unmodified _TVISGVTF_ 0 0 0 ENSG00000133962|ENST00000256343|CATSPERB;nc|ENSG00000133962|Q9H7T0-2|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 412.231636 822.448719 -0.57369 -0.00023649 -2.3965 -0.00098792 -2.9702 -0.0012244 412.2305952031801 18.797 0.096628 18.797 18.763 18.86 0 0.021234 -0.00022124 NaN 13.508 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 644410 66309 4545 44149 45147 0.03039308603149493 TVISGVTF 8 Unmodified _TVISGVTF_ 0 0 0 ENSG00000133962|ENST00000256343|CATSPERB;nc|ENSG00000133962|Q9H7T0-2|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB ENSG00000133962|ENST00000256343|CATSPERB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 412.231636 822.448719 -0.54673 -0.00022538 -2.2534 -0.00092893 -2.8002 -0.0011543 412.23060775086356 18.72 0.15658 18.744 18.645 18.801 0.023106 -0.032526 -0.00010326 NaN 13.508 48 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1930500 66310 4545 44149 45147 0.03039308603149493 TVITKILTK 9 Unmodified _TVITKILTK_ 0 0 0 REV__ENSG00000174697|ENST00000308868|LEP REV__ENSG00000174697|ENST00000308868|LEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.8403625488281 2 508.839342 1015.66413 1.4317 0.00072849 -0.16555 -8.4241E-05 1.2661 0.00064424 508.8391060887744 105.2 0.20741 99.02 98.918 99.125 -6.1757 165 47 5 0 0 0 0.61381 1 70546 70546 0.52476 0 1 1997999999.9999998 + 66311 22809 44150 45148 77390 77390 0.156926500679333 TVITKKKK 8 Unmodified _TVITKKKK_ 0 0 0 REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF REV__ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.3277893066406 2 473.326402 944.638252 1.5437 0.00073069 -0.10603 -5.0188E-05 1.4377 0.0006805 473.32630396877704 105.24 0.11244 99.06 99.025 99.138 -6.1757 42 27 2 0 0 0 0.80676 1 70507 70507 2.5775 2.5775 1 49376000 + 66312 22352 44151 45149 77391 77391 0.16371800616320797 TVKASLVTV 9 Unmodified _TVKASLVTV_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2872924804688 2 459.286943 916.559333 0.33778 0.00015514 -0.24983 -0.00011475 0.087947 4.0393E-05 459.286741624371 49.154 0.32715 48.782 48.616 48.943 -0.37171 36 15 3 0 0 0 0.01958 1 26376 26376 63.961 8.4578 1 6699700 + 66313 18342 44152 45150 77392 77392 0.09771528591386414 TVKASLVTV 9 Unmodified _TVKASLVTV_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2867126464844 2 459.286943 916.559333 0.44997 0.00020667 -0.24328 -0.00011174 0.20669 9.493E-05 459.28684609343287 48.793 0.21305 48.749 48.654 48.867 -0.043694 18 10 2 0 0 0 0.029718 1 26331 26331 55.503 3.8729 1 4662500 + 66314 18342 44152 45150 77393 77393 0.09771528591386414 TVKASLVTV 9 Unmodified _TVKASLVTV_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2867736816406 2 459.286943 916.559333 0.90832 0.00041718 0.23877 0.00010967 1.1471 0.00052684 459.2869194684808 54.821 0.43938 48.956 48.729 49.168 -5.8653 59 26 3 0 0 0 0.029718 2 34745 34745;34885 55.503 2.0987 1 39183000 + 66315 18342 44152 45150 77394;77395 77394 0.09771528591386414 TVKASLVTV 9 Unmodified _TVKASLVTV_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 459.286943 916.559333 0.44997 0.00020667 -0.24328 -0.00011174 0.20669 9.493E-05 459.28684609343287 48.793 0.21305 48.749 48.654 48.867 -0.043694 -0.079854 -0.00021486 NaN 63.961 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4662500 + 66316 18342 44152 45150 0.09771528591386414 TVKASLVTV 9 Unmodified _TVKASLVTV_ 0 0 0 REV__ENSG00000104213|ENST00000251630|PDGFRL REV__ENSG00000104213|ENST00000251630|PDGFRL MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 459.286943 916.559333 0.90832 0.00041718 0.23877 0.00010967 1.1471 0.00052684 459.2869194684808 54.821 0.43938 48.956 48.729 49.168 -5.8653 0.12665 0.00022795 NaN 63.961 59 26 3 NaN NaN NaN NaN 0 NaN NaN 0 39183000 + 66317 18342 44152 45150 0.09771528591386414 TVKATTCLR 9 Unmodified _TVKATTCLR_ 0 0 0 ENST00000415938.7_1_16:2152605-2162466:-|nuORF ENST00000415938.7_1_16:2152605-2162466:-|nuORF ENST00000415938.7_1_16:2152605-2162466:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7811279296875 2 496.781502 991.54845 NaN NaN NaN NaN NaN NaN NaN 95.233 1 94.864 94.364 95.364 -0.36814 0 0 0 0.8622 1 52019 52019 0 0 1 66318 13033 44153 45151 77396 77396 0.05233802945417665 TVKDLMWHK 9 Unmodified _TVKDLMWHK_ 0 0 0 REV__ENST00000446897.1_1_10:32392029-32392209:-|nuORF REV__ENST00000446897.1_1_10:32392029-32392209:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.30908203125 2 579.310426 1156.6063 0.52829 0.00030605 -1.5797 -0.00091514 -1.0514 -0.00060909 579.3091213100145 85.975 0.25259 85.472 85.343 85.595 -0.50318 16 9 2 0 0 0 0.58865 1 47051 47051 2.0598 0 1 348130 + 66319 27150 44154 45152 77397 77397 0.034260648708368535 TVKDNQVVQL 10 Unmodified _TVKDNQVVQL_ 0 0 0 ENSG00000109606|ENST00000336812|DHX15;ENST00000508032.5_1_4:24529549-24538851:-|nuORF;ENST00000510645.5_1_4:24519211-24534570:-|nuORF;ENST00000512903.1_1_4:24529549-24534804:-|nuORF ENSG00000109606|ENST00000336812|DHX15 ENSG00000109606|ENST00000336812|DHX15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.2073364257812 3 381.883789 1142.62954 0.94618 0.00036133 2.4061 0.00091885 3.3523 0.0012802 381.88470945248525 46.255 0.20139 41.3 41.255 41.457 -4.9549 16 13 2 0 0 0 0.23356 1 28649 28649 5.0475 0.64137 1 12131000 66320 2658 44155 45153 77398 77398 0.06392782189186619 TVKEYLGKVS 10 Unmodified _TVKEYLGKVS_ 0 0 0 REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2199401855469 3 375.216768 1122.62847 1.681 0.00063073 -0.19747 -7.4094E-05 1.4835 0.00055664 375.2166501404919 20.655 0.54035 17.962 17.723 18.264 -2.693 107 32 4 0 0 0 0.69848 1 11141 11141 3.0723 0 1 85549000 + 66321 22264 44156 45154 77399 77399 0.07206567820276177 TVKFVLSFL 9 Unmodified _TVKFVLSFL_ 0 0 0 ENST00000488537.1_1_1:145440673-145441098:+|nuORF ENST00000488537.1_1_1:145440673-145441098:+|nuORF ENST00000488537.1_1_1:145440673-145441098:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3216552734375 2 527.320786 1052.62702 0.73695 0.00038861 0.67864 0.00035786 1.4156 0.00074647 527.3211066242196 82.92 0.39314 82.982 82.788 83.181 0.062004 36 14 3 0 0 0 0.032796 1 45938 45938 53.833 3.8998 1 13716000 66322 14223 44157 45155 77400 77400 0.10280978522177975 TVKGGLELTM 10 Unmodified _TVKGGLELTM_ 0 0 0 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 REV__nc|ENSG00000021762|Q9H0X9-3|OSBPL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.1867370605469 3 350.195087 1047.56343 1.5374 0.0005384 0.21179 7.4169E-05 1.7492 0.00061257 350.19531194641456 22.102 0.32256 19.367 19.219 19.542 -2.7348 31 17 2 0 0 0 0.57893 1 11969 11969 10.899 3.7972 1 2567400 + 66323 17110 44158 45156 77401 77401 0.041552500227680866 TVKIIKKPK 9 Unmodified _TVKIIKKPK_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1054.578002929688 1 1054.73468 1053.7274 0.20098 0.00021198 -0.20074 -0.00021172 0.00024558 2.5902E-07 1055.736386844661 52.996 0.097801 52.544 52.476 52.574 -0.45173 6 4 2 0 0 0 0.21893 1 28619 28619 0.52476 0 1 1505000 66324 6400;16288 44159 45157 77402 77402 0.2026863557582601 TVKKNVFMR 9 Unmodified _TVKKNVFMR_ 0 0 0 REV__nc|ENSG00000020922|P49959-2|MRE11 REV__nc|ENSG00000020922|P49959-2|MRE11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8629760742188 3 374.886588 1121.63793 1.1708 0.0004389 3.5524 0.0013317 4.7231 0.0017706 374.8885504193193 49.924 0.061188 49.876 49.846 49.907 -0.048824 4 2 2 0 0 0 0.21572 1 26993 26993 4.5289 1.5336 1 698240 + 66325 17108 44160 45158 77403 77403 0.08198057624804278 TVKKRKQQDQL 11 Unmodified _TVKKRKQQDQL_ 0 0 0 ENSG00000101977|ENST00000519895|MCF2;nc|ENSG00000101977|P10911-3|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2 ENSG00000101977|ENST00000519895|MCF2 ENSG00000101977|ENST00000519895|MCF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.940673828125 3 457.940409 1370.7994 NaN NaN NaN NaN NaN NaN NaN 103.67 1 103.63 103.13 104.13 -0.047928 0 0 0 0.94293 1 57574 57574 0.40827 0 1 66326 2004 44161 45159 77404 77404 0.12882898191605818 TVKPPPRSLRT 11 Unmodified _TVKPPPRSLRT_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1;ENST00000518820.1_1_8:143561046-143604069:+|nuORF ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.3779296875 2 626.380229 1250.7459 NaN NaN NaN NaN NaN NaN NaN 39.359 1 39.37 38.87 39.87 0.011452 0 0 0 0.94304 1 20960 20960 0.96228 0.65524 1 66327 8997 44162 45160 77405 77405 0.1305614547973164 TVKPVVGF 8 Unmodified _TVKPVVGF_ 0 0 0 ENST00000531162.5_1_14:95600723-95607049:-|nuORF ENST00000531162.5_1_14:95600723-95607049:-|nuORF ENST00000531162.5_1_14:95600723-95607049:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7579040527344 2 423.757821 845.501089 1.4048 0.00059528 -1.7125 -0.00072568 -0.30772 -0.0001304 423.7574529371607 97.029 0.23807 90.854 90.708 90.946 -6.1757 18 13 2 0 0 0 0.77907 1 64313 64313 10.183 0 1 7802100 66328 14902 44163 45161 77406 77406 0.07215891736757385 TVLDAIYEV 9 Unmodified _TVLDAIYEV_ 0 0 0 TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant;ENSG00000180346|ENST00000603357|TIGD2 TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant TIGD2|p.Q517Tfs*6|1|0.19|ENSG00000180346|chr4:89114515-89114516|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7738342285156 2 511.773865 1021.53318 0.99575 0.0005096 -1.6658 -0.0008525 -0.67003 -0.0003429 511.7732785152524 86.155 0.59494 79.98 79.727 80.322 -6.1757 70 32 3 0 0 0 0.026094 1 56941 56941 57.471 15.377 1 26106000 66329 8894 44164 45162 77407 77407 0.023272146292242724 TVLDALPRL 9 Unmodified _TVLDALPRL_ 0 0 0 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 ENSG00000183090|ENST00000329798|FREM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3055114746094 2 499.305667 996.596781 NaN NaN NaN NaN NaN NaN NaN 70.123 1 69.644 69.144 70.144 -0.47903 0 0 0 0.43483 1 38343 38343 18.146 0 1 66330 9114 44165 45163 77408 77408 0.09834619856974314 TVLDKYFDI 9 Unmodified _TVLDKYFDI_ 0 0 0 REV__ENSG00000162779|ENST00000367618|AXDND1 REV__ENSG00000162779|ENST00000367618|AXDND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2943725585938 2 557.294965 1112.57538 0.026478 1.4756E-05 -0.27099 -0.00015102 -0.24451 -0.00013627 557.2951618215446 60.796 0.26611 60.306 60.168 60.435 -0.48932 27 12 3 0 0 0 0.28047 1 33169 33169 18.135 0 1 12221000 + 66331 21692 44166 45164 77409 77409 0.02359190037600456 TVLDVNDNAPE 11 Unmodified _TVLDVNDNAPE_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000253159|O60330-2|PCDHGA12;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1912231445312 3 396.191059 1185.55135 0.69257 0.00027439 0.19603 7.7664E-05 0.88859 0.00035205 396.1913820506881 72.96 0.37901 72.484 72.295 72.674 -0.47588 52 16 4 0 0 0 0.66428 2 39886 39886;39988 3.8459 0.28346 1 5988100 66332 10772;10764;10758 44167 45165 77410;77411 77410 -0.03400695186724079 TVLDVNDNAPE 11 Unmodified _TVLDVNDNAPE_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3 nc|ENSG00000253159|O60330-2|PCDHGA12;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.1913452148438 3 396.191059 1185.55135 -0.10141 -4.0179E-05 1.0944 0.0004336 0.99302 0.00039343 396.19129556310037 72.489 0.25933 72.53 72.358 72.617 0.041725 23 11 3 0 0 0 0.66428 1 39919 39919 3.8459 0.52627 1 2005000 66333 10772;10764;10758 44167 45165 77412 77412 -0.03400695186724079 TVLEDSKSN 9 Unmodified _TVLEDSKSN_ 0 0 0 ENSG00000148965|ENST00000278222|SAA4 ENSG00000148965|ENST00000278222|SAA4 ENSG00000148965|ENST00000278222|SAA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7494812011719 2 496.748379 991.482204 0.23183 0.00011516 1.5092 0.00074971 1.7411 0.00086487 496.7490859085733 63.931 0.57825 63.931 63.636 64.214 0 43 23 3 0 0 0 0.21643 2 35598 35598;35707 21.537 21.537 1 1241400 66334 5977 44168 45166 77413;77414 77413 -0.013877344156071558 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.3129272460938 2 547.310615 1092.60668 0.66483 0.00036387 -0.24215 -0.00013253 0.42268 0.00023134 547.3105428968845 57.249 0.52038 57.249 56.922 57.443 0 53 22 4 0 0 0 0.047788 1 31800 31800 45.7 1.8413 1 22051000 66335 10766 44169 45167 77415 77415 0.0640776307170654 TVLEKVYEL 9 Unmodified _TVLEKVYEL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2601928710938 2 547.310615 1092.60668 0.28969 0.00015855 -1.3866 -0.00075888 -1.0969 -0.00060033 547.3097017862555 57.74 0.26449 57.25 57.066 57.331 -0.48974 29 12 3 0 0 0 0.12771 1 31325 31325 34.402 3.7652 1 8887100 66336 10766 44169 45167 77416 77416 0.0640776307170654 TVLELFRVSSY 11 Unmodified _TVLELFRVSSY_ 0 0 0 ENSG00000059804|ENST00000075120|SLC2A3;ENST00000490763.1_1_12:8078421-8082456:-|nuORF;ENST00000495813.5_1_12:8082264-8082456:-|nuORF;nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000173262|Q8TDB8-5|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3;nc|ENSG00000173262|Q8TDB8-4|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.3585815429688 2 657.358628 1312.7027 0.40383 0.00026546 0.92449 0.00060772 1.3283 0.00087318 657.359224777613 72.508 0.3838 72.549 72.316 72.7 0.041733 52 17 4 0 0 0 0.48615 2 39852 39852;39952 17.113 4.8722 1 8413800 66337 821;8308 44170 45168 77417;77418 77417 0.058859109117975095 TVLELFRVSSY 11 Unmodified _TVLELFRVSSY_ 0 0 0 ENSG00000059804|ENST00000075120|SLC2A3;ENST00000490763.1_1_12:8078421-8082456:-|nuORF;ENST00000495813.5_1_12:8082264-8082456:-|nuORF;nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000173262|Q8TDB8-5|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3;nc|ENSG00000173262|Q8TDB8-4|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3594970703125 2 657.358628 1312.7027 0.97807 0.00064295 0.33225 0.0002184 1.3103 0.00086135 657.3589865720342 94.14 0.65987 87.965 87.622 88.282 -6.1757 93 38 3 0 0 0 0.30985 1 62322 62322 26.268 10.119 1 27120000 66338 821;8308 44170 45168 77419 77419 0.058859109117975095 TVLELFRVSSY 11 Unmodified _TVLELFRVSSY_ 0 0 0 ENSG00000059804|ENST00000075120|SLC2A3;ENST00000490763.1_1_12:8078421-8082456:-|nuORF;ENST00000495813.5_1_12:8082264-8082456:-|nuORF;nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000173262|Q8TDB8-5|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3;nc|ENSG00000173262|Q8TDB8-4|SLC2A14 ENSG00000059804|ENST00000075120|SLC2A3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 657.358628 1312.7027 0.70772 0.00046523 0.37355 0.00024556 1.0813 0.00071079 657.358727372702 73.024 0.39841 72.548 72.318 72.717 -0.47588 -0.00057884 -0.00036089 NaN 17.113 48 17 4 NaN NaN NaN NaN 0 NaN NaN 0 1809500 66339 821;8308 44170 45168 0.058859109117975095 TVLELLDKY 9 Unmodified _TVLELLDKY_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3115844726562 2 547.310615 1092.60668 0.5679 0.00031082 -1.1855 -0.00064884 -0.61761 -0.00033803 547.3102296518606 73.127 0.30804 72.652 72.473 72.781 -0.47588 33 13 3 0 0 0 0.15882 1 40008 40008 27.223 5.6863 1 1300700 66340 4588 44171 45169 77420 77420 0.0640776307170654 TVLELLDKY 9 Unmodified _TVLELLDKY_ 0 0 0 ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ ENSG00000134308|ENST00000238081|YWHAQ MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 547.310615 1092.60668 0.454 0.00024848 -1.5423 -0.00084409 -1.0883 -0.00059561 547.3091996657013 72.749 0.14277 72.749 72.637 72.779 0 0.04852 -0.00025218 NaN 27.223 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 426120 66341 4588 44171 45169 0.0640776307170654 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3070068359375 2 532.305332 1062.59611 0.37358 0.00019886 2.612 0.0013904 2.9855 0.0015892 532.3065677493018 91.171 0.34882 90.677 90.455 90.803 -0.49457 18 15 2 0 0 0 0.54444 1 49855 49855 4.756 0.42677 1 305870 66342 16067;16068 44172 45170 77421 77421 0.06731780417271693 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3052978515625 2 532.305332 1062.59611 NaN NaN NaN NaN NaN NaN NaN 90.837 1 90.343 89.843 90.843 -0.49457 0 0 0 0.46757 1 49653 49653 16.942 4.4107 1 66343 16067;16068 44172 45170 77422 77422 0.06731780417271693 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3059692382812 2 532.305332 1062.59611 0.51181 0.00027244 0.30199 0.00016075 0.8138 0.00043319 532.3052996392306 90.088 1.4732 90.13 89.671 91.145 0.042175 115 53 3 0 0 0 0.0090851 6 50384 49929;50030;50141;50254;50384;50501 85.357 35.89 1 19985000 66344 16067;16068 44172 45170 77423;77424;77425;77426;77427;77428 77427 0.06731780417271693 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.3057250976562 2 532.305332 1062.59611 0.9468 0.00050399 -0.1874 -9.9755E-05 0.7594 0.00040423 532.3051788004944 99.297 0.31547 93.121 92.99 93.306 -6.1757 69 19 5 0 0 0 0.0090851 1 66050 66050 85.357 37.011 1 2384200000 66345 16067;16068 44172 45170 77429 77429 0.06731780417271693 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20221201_MKP_PDAC_01 4 532.3049926757812 2 532.305332 1062.59611 NaN NaN NaN NaN NaN NaN NaN 101.71 1 95.531 95.031 96.031 -6.1757 0 0 0 0.10545 1 68263 68263 42.095 18.946 1 66346 16067;16068 44172 45170 77430 77430 0.06731780417271693 TVLELVINY 9 Unmodified _TVLELVINY_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 532.305332 1062.59611 0.38075 0.00020267 1.3945 0.00074232 1.7753 0.000945 532.3063393683323 90.509 0.4892 90.014 89.735 90.225 -0.49457 -0.058046 0.00096907 NaN 85.357 40 22 2 NaN NaN NaN NaN 0 NaN NaN 0 742050 66347 16067;16068 44172 45170 0.06731780417271693 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2951049804688 2 533.294965 1064.57538 0.30653 0.00016347 -1.0646 -0.00056774 -0.75807 -0.00040427 533.294236982512 75.992 1.1127 75.992 75.697 76.809 0 170 47 5 0 0 0 0.00856 6 42356 42149;42250;42356;42462;42566;42671 100.37 42.9 1 362560000 66348 2781;2782 44173 45171 77431;77432;77433;77434;77435;77436 77433 0.04567190037619184 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2960205078125 2 533.294965 1064.57538 -0.007116 -3.7949E-06 -1.3274 -0.00070791 -1.3345 -0.00071171 533.2940831203605 76.445 1.6931 75.966 75.684 77.377 -0.47945 249 84 6 0 0 0 0.0082281 8 41770 41770;41865;41977;42081;42173;42272;42392;42496 92.822 41.967 1 973630000 66349 2781;2782 44173 45171 77437;77438;77439;77440;77441;77442;77443;77444 77437 0.04567190037619184 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.294921875 2 533.294965 1064.57538 0.19224 0.00010252 0.036429 1.9427E-05 0.22867 0.00012195 533.2948073439981 76.003 0.76875 76.051 75.773 76.541 0.047951 93 32 5 0 0 0 0.0082281 3 41962 41844;41962;42074 92.822 41.967 1 123300000 66350 2781;2782 44173 45171 77445;77446;77447 77446 0.04567190037619184 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.295166015625 2 533.294965 1064.57538 0.11083 5.9106E-05 -0.37345 -0.00019916 -0.26262 -0.00014006 533.2947413221201 84.748 1.0861 78.572 78.139 79.225 -6.1757 258 65 5 0 0 0 0.0082281 6 55656 55520;55656;55790;55924;56059;56188 92.822 41.967 1 2687800000 66351 2781;2782 44173 45171 77448;77449;77450;77451;77452;77453 77449 0.04567190037619184 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MSMS AL20221201_MKP_PDAC_01 4 533.2953491210938 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 85.618 1 79.442 78.942 79.942 -6.1757 0 0 0 0.025979 1 56400 56400 71.134 31.176 1 66352 2781;2782 44173 45171 77454 77454 0.04567190037619184 TVLELVTQY 9 Unmodified _TVLELVTQY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2 ENSG00000111331|ENST00000228928|OAS3;nc|ENSG00000111335|P29728|OAS2 ENSG00000111331|ENST00000228928|OAS3 MSMS AL20221201_MKP_PDAC_01 4 533.2951049804688 2 533.294965 1064.57538 NaN NaN NaN NaN NaN NaN NaN 85.821 1 79.646 79.146 80.146 -6.1757 0 0 0 0.056448 1 56545 56545 54.774 8.7526 1 66353 2781;2782 44173 45171 77455 77455 0.04567190037619184 TVLENSTSY 9 Unmodified _TVLENSTSY_ 0 0 0 XPO7-ASAH1|2|fusion;XPO7-ASAH1|1|fusion;nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1 XPO7-ASAH1|2|fusion XPO7-ASAH1|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2416381835938 2 507.242929 1012.47131 -0.27116 -0.00013755 -0.56011 -0.00028411 -0.83128 -0.00042166 507.24231261240055 34.556 0.27247 34.556 34.384 34.656 0 30 13 3 0 0 0 0.1773 1 18178 18178 25.399 3.6527 1 10025000 66354 2233 44174 45172 77456 77456 -0.034431367899060206 TVLEQVLPI 9 Unmodified _TVLEQVLPI_ 0 0 0 ENSG00000132002|ENST00000254322|DNAJB1;nc|ENSG00000132002|P25685-2|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 ENSG00000132002|ENST00000254322|DNAJB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.3085632324219 2 506.307875 1010.6012 0.081533 4.1281E-05 0.88899 0.0004501 0.97052 0.00049138 506.30828464211004 88.73 0.43762 88.225 87.978 88.416 -0.50423 46 18 3 0 0 0 0.047196 2 48546 48452;48546 46.021 19.137 1 2246900 66355 4364 44175 45173 77457;77458 77458 0.09632084279917308 TVLGSVTVAI 10 Unmodified _TVLGSVTVAI_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2926025390625 2 480.292225 958.569897 0.0078126 3.7523E-06 0.66171 0.00031781 0.66952 0.00032157 480.292529715631 61.443 0.33929 60.954 60.777 61.116 -0.48932 39 15 3 0 0 0 0.02987 1 33424 33424 68.081 0 1 11634000 + 66356 22854 44176 45174 77459 77459 0.08895511245816579 TVLGSVTVAI 10 Unmodified _TVLGSVTVAI_ 0 0 0 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 REV__nc|ENSG00000175221|Q9Y2X0-5|MED16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2918090820312 2 480.292225 958.569897 0.86235 0.00041418 -0.6549 -0.00031455 0.20745 9.9636E-05 480.29188775218773 67.393 0.38181 61.217 61.02 61.402 -6.1757 40 21 3 0 0 0 0.041224 1 43964 43964 62.573 6.3957 1 15528000 + 66357 22854 44176 45174 77460 77460 0.08895511245816579 TVLKHHHTD 9 Unmodified _TVLKHHHTD_ 0 0 0 ENST00000332408.8_1_15:49118117-49118171:-|nuORF ENST00000332408.8_1_15:49118117-49118171:-|nuORF ENST00000332408.8_1_15:49118117-49118171:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.287353515625 2 544.285797 1086.55704 0.046481 2.5299E-05 0.33992 0.00018502 0.38641 0.00021031 544.2855911214438 84.733 0.84443 78.558 78.206 79.05 -6.1757 120 49 4 0 0 0 0.08691 1 56002 56002 36.127 36.127 1 89363000 66358 11871 44177 45175 77461 77461 0.01722492906287698 TVLKRHRR 8 Unmodified _TVLKRHRR_ 0 0 0 REV__ENST00000416824.1_1_7:44079705-44080035:+|nuORF REV__ENST00000416824.1_1_7:44079705-44080035:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.3436279296875 2 533.341241 1064.66793 NaN NaN NaN NaN NaN NaN NaN 108.4 1 102.22 101.72 102.72 -6.1757 0 0 0 0.97444 1 72452 72452 0.79363 0 1 + 66359 26781 44178 45176 77462 77462 0.1381817740502811 TVLLEFYAP 9 Unmodified _TVLLEFYAP_ 0 0 0 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 ENSG00000155660|ENST00000652332|PDIA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1052.244506835938 1 1052.56627 1051.559 0.82696 0.00087043 3.915 0.0041208 4.7419 0.0049912 1052.571489899451 47.953 0.055901 47.914 47.89 47.946 -0.038643 4 2 2 0 0 0 0.21367 1 25863 25863 4.756 0.81161 1 1385100 66360 6402 44179 45177 77463 77463 0.0352810887150099 TVLLLKKKKK 10 Unmodified _TVLLLKKKKK_ 0 0 0 ENST00000378289.8_1_10:14940166-14940367:-|nuORF ENST00000378289.8_1_10:14940166-14940367:-|nuORF ENST00000378289.8_1_10:14940166-14940367:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2904357910156 3 400.291831 1197.85366 NaN NaN NaN NaN NaN NaN NaN 70.795 1 70.318 69.818 70.818 -0.47735 0 0 0 1.0047 1 38736 38736 0.15932 0.15932 1 66361 12541 44180 45178 77464 77464 0.26265142081092563 TVLNAVVLSV 10 Unmodified _TVLNAVVLSV_ 0 0 0 ENST00000476258.5_1_17:73132134-73132194:-|nuORF ENST00000476258.5_1_17:73132134-73132194:-|nuORF ENST00000476258.5_1_17:73132134-73132194:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8143310546875 2 507.813325 1013.6121 0.065718 3.3373E-05 0.33335 0.00016928 0.39907 0.00020265 507.81342764570684 95.195 0.25111 94.827 94.717 94.968 -0.36814 18 11 2 0 0 0 0.66569 1 51976 51976 6.7232 0 1 519570 66362 13978 44181 45179 77465 77465 0.1058348665419544 TVLNMMQFI 9 Unmodified _TVLNMMQFI_ 0 0 0 REV__ENST00000554882.5_1_14:31576440-31576804:-|nuORF REV__ENST00000554882.5_1_14:31576440-31576804:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7816162109375 2 548.780113 1095.54567 NaN NaN NaN NaN NaN NaN NaN 89.003 1 89.003 88.503 89.503 0 0 0 0 0.82015 1 49254 49254 5.2307 0 1 + 66363 28761 44182 45180 77466 77466 0.001722114962831256 TVLPRFHL 8 Unmodified _TVLPRFHL_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2984924316406 2 491.795269 981.575986 0.84938 0.00041772 1.5783 0.00077618 2.4276 0.0011939 491.79578540750936 42.663 0.38573 42.654 42.599 42.985 -0.0088196 34 17 2 0 0 0 0.80311 1 22976 22976 4.756 0 1 10108000 + 66364 18580 44183 45181 77467 77467 0.08446074267999393 TVLQAVSAF 9 Unmodified _TVLQAVSAF_ 0 0 0 ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF ENST00000331835.9_2_1:87346375-87379803:-|nuORF ENST00000331835.9_2_1:87346375-87379803:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2643432617188 2 468.263468 934.512382 NaN NaN NaN NaN NaN NaN NaN 71.94 1 71.464 70.964 71.964 -0.47609 0 0 0 0.39043 1 39369 39369 20.454 3.5113 1 66365 9131 44184 45182 77468 77468 0.04250669040231969 TVLQRLDV 8 Unmodified _TVLQRLDV_ 0 0 0 ENST00000507452.5_1_5:76747118-76788033:-|nuORF;nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41 ENST00000507452.5_1_5:76747118-76788033:-|nuORF ENST00000507452.5_1_5:76747118-76788033:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2818298339844 2 472.282192 942.549831 0.39739 0.00018768 -0.31708 -0.00014975 0.080316 3.7932E-05 472.2817584421668 58.008 0.26898 57.519 57.39 57.659 -0.48974 22 12 2 0 0 0 0.50673 1 31504 31504 34.102 0 1 3028100 66366 7169 44185 45183 77469 77469 0.07625760305847962 TVLRLSEAY 9 Unmodified _TVLRLSEAY_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.292236328125 2 526.292756 1050.57096 0.57121 0.00030062 -0.44883 -0.00023622 0.12237 6.4404E-05 526.2925149801182 47.373 0.28571 47.02 46.86 47.145 -0.3526 36 13 4 0 0 0 0.085786 1 25378 25378 45.74 18.111 1 10289000 66367 4988 44186 45184 77470 77470 0.04769725614710296 TVLRLSEAY 9 Unmodified _TVLRLSEAY_ 0 0 0 ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 ENSG00000137936|ENST00000260502|BCAR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2922973632812 2 526.292756 1050.57096 0.89813 0.00047268 -0.77139 -0.00040597 0.12675 6.6707E-05 526.292184849063 53.018 0.31606 47.214 47.085 47.401 -5.8042 24 17 2 0 0 0 0.058763 1 33474 33474 53.404 15.228 1 37285000 66368 4988 44186 45184 77471 77471 0.04769725614710296 TVLSDVHLY 9 Unmodified _TVLSDVHLY_ 0 0 0 ENSG00000067365|ENST00000381920|METTL22;nc|ENSG00000067365|Q9BUU2-2|METTL22 ENSG00000067365|ENST00000381920|METTL22 ENSG00000067365|ENST00000381920|METTL22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7806396484375 2 523.779482 1045.54441 0.5753 0.00030133 -1.1217 -0.0005875 -0.54635 -0.00028617 523.7797033674683 58.29 0.33851 58.29 58.103 58.441 0 19 12 2 0 0 0 0.39863 1 32469 32469 12.532 0 1 1021400 66369 957 44187 45185 77472 77472 0.023460367233838042 TVLTEEVF 8 Unmodified _TVLTEEVF_ 0 0 0 ENSG00000258659|ENST00000429814|TRIM34;nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF ENSG00000258659|ENST00000429814|TRIM34 ENSG00000258659|ENST00000429814|TRIM34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.7504272460938 2 469.247483 936.480414 1.5427 0.00072389 0.6682 0.00031355 2.2109 0.0010374 469.2477058724311 82.069 0.43861 82.131 81.932 82.371 0.062004 41 17 3 0 0 0 0.80232 1 45358 45358 5.2307 2.3415 1 18548000 66370 10819 44188 45186 77473 77473 0.009632565664446702 TVLTLLDKL 9 Unmodified _TVLTLLDKL_ 0 0 0 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 ENSG00000168497|ENST00000304141|CAVIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.3243408203125 2 508.323525 1014.6325 0.21169 0.00010761 -1.161 -0.00059018 -0.94934 -0.00048257 508.32322197684385 84.024 0.28044 83.524 83.365 83.645 -0.49961 18 11 2 0 0 0 0.2546 1 45986 45986 19.362 0.98885 1 688820 66371 7772 44189 45187 77474 77474 0.1257665731399129 TVLVLPDL 8 Unmodified _TVLVLPDL_ 0 0 0 REV__ENSG00000109101|ENST00000579795|FOXN1 REV__ENSG00000109101|ENST00000579795|FOXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.5341186523438 1 869.534246 868.52697 0.36301 0.00031565 -0.57392 -0.00049904 -0.2109 -0.00018339 869.5334820122482 100.62 0.083572 94.445 94.389 94.472 -6.1757 8 5 2 0 0 0 0.052857 1 67317 67317 146.01 8.4221 1 18786000 + 66372 18644 44190 45188 77475 77475 0.08744741188377247 TVMDEIHTV 9 Oxidation (M) _TVM(Oxidation (M))DEIHTV_ TVM(1)DEIHTV TVM(65)DEIHTV 0 0 1 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7534790039062 2 530.752607 1059.49066 NaN NaN NaN NaN NaN NaN NaN 31.998 1 31.998 31.498 32.498 0 0 0 0 0.032808 1 16691 16691 65.235 12.967 1 66373 825 44191 45189 77476 77476 126 -0.0367050377067244 TVMDLLLEY 9 Oxidation (M) _TVM(Oxidation (M))DLLLEY_ TVM(1)DLLLEY TVM(42)DLLLEY 0 0 1 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7815551757812 2 556.780833 1111.54711 0.4409 0.00024548 0.25546 0.00014223 0.69635 0.00038772 556.7809672868779 79.911 0.39211 79.911 79.709 80.101 0 56 20 4 0 0 0 0.06187 2 44327 44327;44419 42.095 34.184 1 5825500 66374 4672 44192 45190 77477;77478 77477 845 -0.004198759339942626 TVMDLLLEY 9 Oxidation (M) _TVM(Oxidation (M))DLLLEY_ TVM(1)DLLLEY TVM(57)DLLLEY 0 0 1 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7819213867188 2 556.780833 1111.54711 0.44102 0.00024555 1.1269 0.00062742 1.5679 0.00087297 556.7813910762571 80.883 0.45258 80.883 80.649 81.102 0 61 22 4 0 0 0 0.026094 2 44865 44865;44967 57.471 44.94 1 4862500 66375 4672 44192 45190 77479;77480 77479 845 -0.004198759339942626 TVMDLLLEY 9 Oxidation (M) _TVM(Oxidation (M))DLLLEY_ TVM(1)DLLLEY TVM(51)DLLLEY 0 0 1 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.7815551757812 2 556.780833 1111.54711 1.1019 0.00061351 3.6061 0.0020078 4.708 0.0026213 556.781244677782 80.397 0.34969 79.907 79.755 80.105 -0.48932 32 13 4 0 0 0 0.038285 1 44065 44065 50.855 35.008 1 1469300 66376 4672 44192 45190 77481 77481 845 -0.004198759339942626 TVMDLLLEY 9 Oxidation (M) _TVM(Oxidation (M))DLLLEY_ 0 0 1 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 556.780833 1111.54711 0.38092 0.00021209 1.1647 0.00064849 1.5456 0.00086058 556.7807999410687 79.848 0.23072 79.906 79.797 80.028 0.057587 -0.0025145 0.00068352 NaN 50.855 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1641200 66377 4672 44192 45190 845 -0.004198759339942626 TVMDLLLEY 9 Unmodified _TVMDLLLEY_ 0 0 0 ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7839965820312 2 548.783376 1095.5522 1.6252 0.00089188 0.4928 0.00027044 2.118 0.0011623 548.7834437400239 100.87 0.20852 94.699 94.623 94.831 -6.1757 43 12 5 0 0 0 0.042911 1 67580 67580 48.346 31.404 1 168680000 66378 4672 44192 45191 77482 77482 0.008244279286373057 TVMDVVEYF 9 Oxidation (M) _TVM(Oxidation (M))DVVEYF_ TVM(1)DVVEYF TVM(51)DVVEYF 0 0 1 ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7575073242188 2 559.757358 1117.50016 0.52923 0.00029624 0.0022593 1.2647E-06 0.53149 0.0002975 559.7573203068217 72.661 0.40693 72.661 72.433 72.84 0 39 18 3 0 0 0 0.038285 1 40426 40426 50.855 40.781 1 2730400 66379 5377 44193 45192 77483 77483 991 -0.053887354851212876 TVMEELEDIVI 11 Unmodified _TVMEELEDIVI_ 0 0 0 ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L ENSG00000113272|ENST00000231198|THG1L MSMS AL20221201_MKP_PDAC_01 4 430.8881225585938 3 430.8881 1289.64247 NaN NaN NaN NaN NaN NaN NaN 77.469 1 71.293 70.793 71.793 -6.1757 0 0 0 0.93224 1 50673 50673 2.6312 0 1 66380 2952 44194 45193 77484 77484 0.009234324663793814 TVMEYLLI 8 Unmodified _TVMEYLLI_ 0 0 0 REV__ENSG00000060140|ENST00000075503|STYK1 REV__ENSG00000060140|ENST00000075503|STYK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7415771484375 2 491.269904 980.525255 0.44166 0.00021697 2.3824 0.0011704 2.8241 0.0013874 491.2707076520045 59.69 0.2191 59.69 59.577 59.796 0 16 9 2 0 0 0 8.7369 1 33228 33228 5.2307 0.47466 1 2196200 + 66381 17323 44195 45194 77485 77485 0.03421364108112357 TVMLGEADLL 10 Unmodified _TVMLGEADLL_ 0 0 0 REV__nc|ENSG00000184730|Q0VD83-3|APOBR;REV__nc|ENSG00000184730|Q0VD83-2|APOBR REV__nc|ENSG00000184730|Q0VD83-3|APOBR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7600708007812 2 531.281 1060.54745 0.19694 0.00010463 0.1493 7.9319E-05 0.34624 0.00018395 531.2807426633934 40.282 0.69252 40.282 39.853 40.545 0 143 34 7 0 0 0 0.23693 1 21786 21786 6.2058 0 1 245490000 + 66382 29848;23440 44196 45195 77486 77486 0.01959543785869755 TVMNIAEHY 9 Oxidation (M) _TVM(Oxidation (M))NIAEHY_ TVM(1)NIAEHY TVM(82)NIAEHY 0 0 1 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.252685546875 2 547.252774 1092.491 -0.55982 -0.00030636 -0.54998 -0.00030098 -1.1098 -0.00060734 547.2526655489243 30.474 0.40615 30.474 30.305 30.711 0 60 19 5 0 0 0 0.009483 2 15793 15793;15893 81.89 52.809 1 27990000 66383 2409;13961 44197 45196 77487;77488 77487 417 -0.05155084050784353 TVMNIAEHY 9 Oxidation (M) _TVM(Oxidation (M))NIAEHY_ TVM(1)NIAEHY TVM(89)NIAEHY 0 0 1 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.251708984375 2 547.252774 1092.491 -0.10922 -5.9773E-05 -0.55215 -0.00030217 -0.66137 -0.00036194 547.2524383046248 30.897 0.36087 30.897 30.73 31.091 0 55 17 5 0 0 0 0.008678 2 16027 16027;16135 88.904 48.946 1 28850000 66384 2409;13961 44197 45196 77489;77490 77489 417 -0.05155084050784353 TVMNIAEHY 9 Oxidation (M) _TVM(Oxidation (M))NIAEHY_ TVM(1)NIAEHY TVM(72)NIAEHY 0 0 1 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2530517578125 2 547.252774 1092.491 0.72523 0.00039688 -0.40599 -0.00022218 0.31923 0.0001747 547.2526914144922 34.533 0.39858 30.438 30.269 30.668 -4.0951 55 23 3 0 0 0 0.013041 2 19985 19860;19985 71.922 39.617 1 27651000 66385 2409;13961 44197 45196 77491;77492 77492 417 -0.05155084050784353 TVMNIAEHY 9 Oxidation (M) _TVM(Oxidation (M))NIAEHY_ TVM(1)NIAEHY TVM(58)NIAEHY 0 0 1 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2548217773438 2 547.252774 1092.491 0.89226 0.00048829 -0.21556 -0.00011797 0.6767 0.00037033 547.252746788331 35.012 0.47041 30.917 30.65 31.12 -4.0951 60 27 3 0 0 0 0.025842 1 20160 20160 57.722 31.454 1 29302000 66386 2409;13961 44197 45196 77493 77493 417 -0.05155084050784353 TVMNIAEHY 9 Unmodified _TVMNIAEHY_ 0 0 0 nc|ENSG00000106263|P55884-2|EIF3B;ENSG00000106263|ENST00000360876|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B;ENST00000475415.5_1_7:2414943-2418434:+|nuORF nc|ENSG00000106263|P55884-2|EIF3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2556762695312 2 539.255317 1076.49608 0.72352 0.00039016 2.4428 0.0013173 3.1663 0.0017075 539.2566117270563 48.722 0.53179 43.326 43.101 43.633 -5.3961 77 31 4 0 0 0 0.08691 1 30252 30252 36.127 13.391 1 209610000 66387 2409;13961 44197 45197 77494 77494 -0.03910780188175522 TVMRMTAF 8 Unmodified _TVMRMTAF_ 0 0 0 nc|ENSG00000140945|P55290-5|CDH13;ENSG00000140945|ENST00000567109|CDH13;nc|ENSG00000140945|P55290-4|CDH13 nc|ENSG00000140945|P55290-5|CDH13 nc|ENSG00000140945|P55290-5|CDH13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2021789550781 2 478.738248 955.461943 0.41181 0.00019715 0.71933 0.00034437 1.1311 0.00054152 478.73859917986306 51.625 0.50028 51.625 51.302 51.802 0 46 22 3 0 0 0 8.7369 1 28409 28409 5.7604 1.4312 1 16957000 66388 5284 44198 45198 77495 77495 -0.017568998807632852 TVMTMTMMF 9 Unmodified _TVMTMTMMF_ 0 0 0 ENST00000534003.5_1_11:47776147-47786836:-|nuORF ENST00000534003.5_1_11:47776147-47786836:-|nuORF ENST00000534003.5_1_11:47776147-47786836:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2052612304688 2 546.73346 1091.45237 0.62439 0.00034137 0.21982 0.00012018 0.84421 0.00046156 546.7335152242283 60.064 0.30183 60.064 59.923 60.225 0 21 13 2 0 0 0 0.20727 1 33477 33477 4.3292 0.38484 1 2126200 66389 14945 44199 45199 77496 77496 -0.08970172272825039 TVNDDFRSY 9 Unmodified _TVNDDFRSY_ 0 0 0 ENST00000479859.1_1_2:24194257-24199946:+|nuORF;nc|ENSG00000173960|P68543-2|UBXN2A;ENSG00000173960|ENST00000309033|UBXN2A ENST00000479859.1_1_2:24194257-24199946:+|nuORF ENST00000479859.1_1_2:24194257-24199946:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7520141601562 2 558.751453 1115.48835 NaN NaN NaN NaN NaN NaN NaN 76.095 1 76.095 75.595 76.595 0 0 0 0 0.83049 1 42317 42317 3.9444 0.66309 1 66390 8381 44200 45200 77497 77497 -0.0647721618408923 TVNEPTRLI 9 Unmodified _TVNEPTRLI_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.794677734375 2 521.798206 1041.58186 1.1071 0.00057769 1.159 0.00060477 2.2661 0.0011825 521.7982882738005 99.347 0.20885 93.171 93.097 93.306 -6.1757 19 13 2 0 0 0 0.16226 1 66239 66239 26.884 2.8631 1 110690000 + 66391 20661 44201 45201 77498 77498 0.0627312798899311 TVNPKSITM 9 Unmodified _TVNPKSITM_ 0 0 0 ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 ENSG00000174844|ENST00000495027|DNAH12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2378234863281 2 495.76806 989.521567 NaN NaN NaN NaN NaN NaN NaN 40.66 1 40.66 40.16 41.16 0 0 0 0 0.29524 1 21869 21869 25.399 3.6527 1 66392 8464 44202 45202 77499 77499 0.026386943342572522 TVNQGPLQY 9 Unmodified _TVNQGPLQY_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7960510253906 2 510.261456 1018.50836 1.0508 0.00053619 -0.23822 -0.00012155 0.81261 0.00041464 510.261691027952 53.916 0.29173 48.051 47.883 48.175 -5.8653 20 17 2 0 0 0 0.20727 1 34141 34141 7.9102 0.62092 1 9490000 + 66393 17475 44203 45203 77500 77500 -0.00015420453473780071 TVNVARWF 8 Unmodified _TVNVARWF_ 0 0 0 REV__ENST00000420877.1_1_21:36118061-36154442:+|nuORF REV__ENST00000420877.1_1_21:36118061-36154442:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2662658691406 2 496.769252 991.52395 0.20637 0.00010252 1.6158 0.0008027 1.8222 0.00090522 496.7704553169827 72.249 0.63229 72.249 71.776 72.408 0 76 28 4 0 0 0 0.80143 1 40030 40030 5.7604 0 1 21649000 + 66394 26840 44204 45204 77501 77501 0.02784910854222744 TVNYNTHGEL 10 Unmodified _TVNYNTHGEL_ 0 0 0 nc|ENSG00000131368|P82663-3|MRPS25;nc|ENSG00000131368|P82663-2|MRPS25;ENSG00000131368|ENST00000253686|MRPS25 nc|ENSG00000131368|P82663-3|MRPS25 nc|ENSG00000131368|P82663-3|MRPS25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.271484375 2 574.272552 1146.53055 -0.35904 -0.00020619 0.46937 0.00026955 0.11033 6.336E-05 574.2723956622749 33.105 0.31555 33.105 32.927 33.243 0 42 15 4 0 0 0 0.34435 1 17293 17293 17.113 0 1 10373000 66395 4317 44205 45205 77502 77502 -0.03685240775712373 TVNYSCNEGF 10 Unmodified _TVNYSCNEGF_ 0 0 0 nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1 nc|ENSG00000203710|P17927|CR1 nc|ENSG00000203710|P17927|CR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.234130859375 2 567.232039 1132.44952 NaN NaN NaN NaN NaN NaN NaN 93.061 1 92.604 92.104 93.104 -0.4574 0 0 0 0.96627 1 50861 50861 4.3292 0.73274 1 66396 10220 44206 45206 77503 77503 -0.11140264810114786 TVPDDVVP 8 Unmodified _TVPDDVVP_ 0 0 0 REV__ENSG00000078114|ENST00000377122|NEBL;REV__nc|ENSG00000078114|O76041-2|NEBL REV__nc|ENSG00000078114|O76041-2|NEBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.2185974121094 2 421.218726 840.422899 0.33078 0.00013933 0.85961 0.00036208 1.1904 0.00050142 421.21899946949753 74.133 0.2493 74.133 74.021 74.271 0 19 12 2 0 0 0 0.79669 1 41246 41246 8.5933 0 1 285860 + 66397 17622;29509 44207 45207 77504 77504 -0.003695856391345842 TVPDISEVY 9 Unmodified _TVPDISEVY_ 0 0 0 REV__ENSG00000169087|ENST00000306103|HSPBAP1 REV__ENSG00000169087|ENST00000306103|HSPBAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7556762695312 2 511.755672 1021.49679 0.21569 0.00011038 -0.4424 -0.0002264 -0.22671 -0.00011602 511.75536986816303 61.776 0.40331 61.776 61.548 61.951 0 36 17 3 0 0 0 0.2143 1 34507 34507 21.747 4.8044 1 4425100 + 66398 22374 44208 45208 77505 77505 -0.013096622674765968 TVPEGQFDHF 10 Unmodified _TVPEGQFDHF_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.848876953125 3 392.848856 1175.52474 -0.91512 -0.0003595 1.0439 0.0004101 0.12879 5.0596E-05 392.8492312142272 32.116 0.24036 32.116 31.983 32.223 0 33 11 4 0 0 0 0.6606 1 16725 16725 3.8763 0 1 12513000 66399 7769 44209 45209 77506 77506 -0.056003392873890334 TVPEGQFDHF 10 Unmodified _TVPEGQFDHF_ 0 0 0 nc|ENSG00000168477|P22105-1|TNXB;ENSG00000168477|ENST00000644971|TNXB;nc|ENSG00000168477|P22105-4|TNXB;TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant nc|ENSG00000168477|P22105-1|TNXB nc|ENSG00000168477|P22105-1|TNXB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8486938476562 3 392.848856 1175.52474 -1.0812 -0.00042474 0.57433 0.00022562 -0.50686 -0.00019912 392.84907000073827 32.74 0.27044 32.74 32.618 32.889 0 43 13 4 0 0 0 0.6606 1 17088 17088 3.8763 0 1 33196000 66400 7769 44209 45209 77507 77507 -0.056003392873890334 TVPEPRVPL 9 Unmodified _TVPEPRVPL_ 0 0 0 ENST00000366613.1_1_1:234509430-234509547:+|nuORF ENST00000366613.1_1_1:234509430-234509547:+|nuORF ENST00000366613.1_1_1:234509430-234509547:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2987365722656 2 504.297842 1006.58113 0.75241 0.00037944 2.072 0.0010449 2.8245 0.0014244 504.2992303228444 59.69 0.77666 59.69 59.423 60.199 0 81 35 3 0 0 0 0.14 1 33187 33187 29.082 2.1979 1 18820000 66401 12206 44210 45210 77508 77508 0.07810333339955378 TVPESIHSF 9 Unmodified _TVPESIHSF_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR;ENST00000490931.1_1_1:11167544-11171580:-|nuORF ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7557983398438 2 508.756007 1015.49746 0.15511 7.8913E-05 0.43463 0.00022112 0.58974 0.00030003 508.75617928916273 40.295 0.27151 39.998 39.882 40.154 -0.29716 23 12 2 0 0 0 0.41742 1 21273 21273 11.64 0 1 5852100 66402 10153 44211 45211 77509 77509 -0.009668228277632807 TVPFGRPLASP 11 Unmodified _TVPFGRPLASP_ 0 0 0 REV__ENST00000502536.5_1_5:38845996-38846116:+|nuORF REV__ENST00000502536.5_1_5:38845996-38846116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.217529296875 3 381.216991 1140.62914 0.77991 0.00029731 1.0883 0.00041489 1.8682 0.00071221 381.2172696959634 57.88 0.43948 57.814 57.614 58.053 -0.066036 63 21 4 0 0 0 0.721 1 31576 31576 0.92553 0.061158 1 8551000 + 66403 28022 44212 45212 77510 77510 0.0644540725998013 TVPGVYIVS 9 Unmodified _TVPGVYIVS_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 935.527099609375 1 934.52441 933.517133 1.0795 0.0010089 0.092278 8.6236E-05 1.1718 0.0010951 934.5243580133787 74.693 0.56734 68.517 68.213 68.78 -6.1757 48 29 2 0 0 0 0.2143 1 48761 48761 21.747 2.3076 1 18816000 66404 16209 44213 45213 77511 77511 0.047715531829908286 TVPLTFLFV 9 Unmodified _TVPLTFLFV_ 0 0 0 ENSG00000128253|ENST00000652607|RFPL2;nc|ENSG00000128253|O75678-3|RFPL2;ENSG00000128250|ENST00000354373|RFPL1 ENSG00000128253|ENST00000652607|RFPL2;ENSG00000128250|ENST00000354373|RFPL1 ENSG00000128250|ENST00000354373|RFPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8082275390625 2 518.807511 1035.60047 1.1324 0.00058748 1.956 0.0010148 3.0884 0.0016023 518.807677012394 102.43 0.0914 96.255 96.204 96.296 -6.1757 22 9 3 0 0 0 0.038285 1 68740 68740 50.855 3.9342 1 13948000 66405 4052;4051 44214 45214 77512 77512 0.08409289630844796 TVPNVRTL 8 Unmodified _TVPNVRTL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-2|MYO19 REV__nc|ENSG00000278259|Q96H55-2|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2676391601562 2 450.269084 898.523616 0.5792 0.0002608 -1.405 -0.00063264 -0.82583 -0.00037185 450.2683417833779 38.34 0.27412 38.34 38.22 38.494 0 41 24 2 0 0 0 0.40035 1 20427 20427 44.407 0 1 15091000 + 66406 24669 44215 45215 77513 77513 0.07029491134380805 TVPNVRTL 8 Unmodified _TVPNVRTL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-2|MYO19 REV__nc|ENSG00000278259|Q96H55-2|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2691650390625 2 450.269084 898.523616 -0.072603 -3.2691E-05 0.35604 0.00016031 0.28344 0.00012762 450.26923342564265 38.498 0.31117 38.212 38.071 38.382 -0.28687 42 14 4 0 0 0 0.48669 1 20340 20340 36.044 0 1 19060000 + 66407 24669 44215 45215 77514 77514 0.07029491134380805 TVPNVRTL 8 Unmodified _TVPNVRTL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-2|MYO19 REV__nc|ENSG00000278259|Q96H55-2|MYO19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2704467773438 2 450.269084 898.523616 1.2208 0.00054967 -0.10793 -4.8597E-05 1.1128 0.00050107 450.2689910439246 42.663 0.52845 37.979 37.732 38.26 -4.6846 90 34 3 0 0 0 0.36356 2 25713 25713;25842 48.346 3.9388 1 140750000 + 66408 24669 44215 45215 77515;77516 77515 0.07029491134380805 TVPNVRTL 8 Unmodified _TVPNVRTL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-2|MYO19 REV__nc|ENSG00000278259|Q96H55-2|MYO19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 449.7431640625 2 450.269084 898.523616 1.2208 0.00054967 -0.10793 -4.8597E-05 1.1128 0.00050107 450.2689910439246 42.663 0.52845 37.979 37.732 38.26 -4.6846 90 34 3 0 0 0 8.7369 1 25951 25951 21.747 0 1 140750000 + 66409 24669 44215 45215 77517 77517 0.07029491134380805 TVPNVRTL 8 Unmodified _TVPNVRTL_ 0 0 0 REV__nc|ENSG00000278259|Q96H55-2|MYO19 REV__nc|ENSG00000278259|Q96H55-2|MYO19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 450.269084 898.523616 0.5792 0.0002608 -1.405 -0.00063264 -0.82583 -0.00037185 450.2683417833779 38.34 0.27412 38.34 38.22 38.494 0 0.18041 -0.00059327 NaN 48.346 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 15091000 + 66410 24669 44215 45215 0.07029491134380805 TVPPVPTEP 9 Unmodified _TVPPVPTEP_ 0 0 0 ENST00000552763.1_1_12:56232267-56234646:-|nuORF;ENST00000548882.5_1_12:56232267-56233517:-|nuORF;ENST00000547685.5_1_12:56231631-56233583:-|nuORF;nc|ENSG00000123342|Q99542-5|MMP19;ENST00000552872.5_1_12:56231631-56234980:-|nuORF;ENSG00000123342|ENST00000322569|MMP19 ENST00000552763.1_1_12:56232267-56234646:-|nuORF ENST00000552763.1_1_12:56232267-56234646:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.5418701171875 1 936.503674 935.496398 0.33799 0.00031653 -0.58221 -0.00054524 -0.24422 -0.00022871 936.5034138879926 93.999 0.32615 93.579 93.39 93.716 -0.42044 31 15 3 0 0 0 0.59218 1 51265 51265 1.8442 0 1 2602700 66411 3698 44216 45216 77518 77518 0.02606962803326951 TVPQSFSPY 9 Unmodified _TVPQSFSPY_ 0 0 0 REV__nc|ENSG00000163534|Q96LA6-4|FCRL1 REV__nc|ENSG00000163534|Q96LA6-4|FCRL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2507934570312 2 513.250557 1024.48656 0.36588 0.00018779 1.1807 0.00060598 1.5465 0.00079377 513.2513322406139 68.635 0.23097 68.635 68.509 68.74 0 13 10 2 0 0 0 0.55144 1 38283 38283 4.3292 0 1 353280 + 66412 27872 44217 45217 77519 77519 -0.024702252020460946 TVPRRLGP 8 Unmodified _TVPRRLGP_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2774963378906 2 448.277244 894.539935 0.34371 0.00015408 0.28342 0.00012705 0.62713 0.00028113 448.277420338614 32.905 0.22487 32.935 32.842 33.067 0.029743 20 9 3 0 0 0 0.6895 1 17295 17295 18.135 0 1 3129300 66413 4904 44218 45218 77520 77520 0.08844617091142482 TVPTPSYTF 9 Unmodified _TVPTPSYTF_ 0 0 0 REV__nc|ENSG00000159216|Q01196-11|RUNX1 REV__nc|ENSG00000159216|Q01196-11|RUNX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7522888183594 2 506.752933 1011.49131 NaN NaN NaN NaN NaN NaN NaN 78.046 1 77.564 77.064 78.064 -0.4826 0 0 0 0.6306 1 42743 42743 11.64 0 1 + 66414 21469 44219 45219 77521 77521 -0.013973410592939217 TVPTWARR 8 Unmodified _TVPTWARR_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7787780761719 2 493.780151 985.545748 0.29566 0.00014599 0.17595 8.6879E-05 0.47161 0.00023287 493.7801557026465 18.027 0.19467 18.033 17.921 18.115 0.0060463 33 12 3 0 0 0 0.71527 1 9086 9086 15.847 0 1 5677600 + 66415 21279 44220 45220 77522 77522 0.05239715602795059 TVPTWARR 8 Unmodified _TVPTWARR_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 493.780151 985.545748 0.29566 0.00014599 0.17595 8.6879E-05 0.47161 0.00023287 493.7801557026465 18.027 0.19467 18.033 17.921 18.115 0.0060463 0 0 NaN 15.847 33 12 3 NaN NaN NaN NaN 0 NaN NaN 0 5677600 + 66416 21279 44220 45220 0.05239715602795059 TVPVEAVTSK 10 Unmodified _TVPVEAVTSK_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7940673828125 2 515.792589 1029.57063 -0.23384 -0.00012061 1.1861 0.00061177 0.95224 0.00049116 515.7931688769464 29.078 0.19884 29.078 28.943 29.142 0 17 9 2 0 0 0 0.1552 1 15053 15053 39.213 18.798 1 1771400 66417 1415 44221 45221 77523 77523 0.05702305894828896 TVQDLFSSV 9 Unmodified _TVQDLFSSV_ 0 0 0 REV__ENSG00000163960|ENST00000296328|UBXN7 REV__ENSG00000163960|ENST00000296328|UBXN7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2558898925781 2 498.25584 994.497126 NaN NaN NaN NaN NaN NaN NaN 76.399 1 76.399 75.899 76.899 0 0 0 0 0.82396 1 42481 42481 4.756 0 1 + 66418 21843 44222 45222 77524 77524 -0.0003424254761057455 TVQDLQGEV 9 Unmodified _TVQDLQGEV_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7518005371094 2 494.750921 987.48729 0.097156 4.8068E-05 0.52427 0.00025938 0.62143 0.00030745 494.7511462107133 31.532 0.26283 31.532 31.418 31.681 0 22 12 2 0 0 0 0.12424 1 16422 16422 30.637 0 1 5653000 66419 665 44223 45223 77525 77525 -0.0069543055299163825 TVQEPRVRAKY 11 Unmodified _TVQEPRVRAKY_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.589599609375 3 449.589487 1345.74663 0.46525 0.00020917 0.11759 5.2867E-05 0.58283 0.00026204 449.589458553778 38.209 0.20076 38.226 38.09 38.291 0.01704 13 8 2 0 0 0 0.66428 1 20304 20304 3.8459 0 1 5450000 66420 4271 44224 45224 77526 77526 0.08758940128814174 TVQLEEYK 8 Unmodified _TVQLEEYK_ 0 0 0 REV__ENSG00000170454|ENST00000252245|KRT75;REV__CON__P50446 REV__CON__P50446 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7975158691406 2 505.263665 1008.51278 0.45681 0.00023081 -0.72403 -0.00036583 -0.26722 -0.00013502 505.2631646593174 63.048 0.20082 63.048 62.895 63.096 0 12 8 2 0 0 0 8.7369 1 35184 35184 2.3027 0 1 641880 + + 66421 16833;16839 44225 45225 77527 77527 0.008860439694217348 TVQLWPRQ 8 Unmodified _TVQLWPRQ_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557314.5_1_14:20839728-20850189:-|nuORF nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1027.908447265625 1 1027.56834 1026.56106 0.57987 0.00059586 3.1662 0.0032535 3.7461 0.0038494 1028.5747490355398 57.823 0.28353 51.795 51.552 51.835 -6.0275 22 15 2 0 0 0 8.7369 1 37024 37024 0.6015 0 1 58957000 66422 4151 44226 45226 77528 77528 0.048845823999727145 TVQRNPELVL 10 Unmodified _TVQRNPELVL_ 0 0 0 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 nc|ENSG00000090975|Q9BZ72-2|PITPNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.8381958007812 2 584.837862 1167.66117 0.001034 6.0471E-07 -0.55824 -0.00032648 -0.55721 -0.00032588 584.8373926164847 46.95 0.32658 46.95 46.799 47.125 0 38 15 3 0 0 0 0.42068 1 25778 25778 20.454 0 1 30615000 66423 16073 44227 45227 77529 77529 0.08404774943119264 TVQSSLSLF 9 Unmodified _TVQSSLSLF_ 0 0 0 REV__ENSG00000171815|ENST00000306549|PCDHB1 REV__ENSG00000171815|ENST00000306549|PCDHB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.266845703125 2 491.266207 980.517862 NaN NaN NaN NaN NaN NaN NaN 55.614 1 55.614 55.114 56.114 0 0 0 0 0.29524 1 30902 30902 25.399 2.663 1 + 66424 22605 44228 45228 77530 77530 0.026823478320579852 TVQSSLSLF 9 Unmodified _TVQSSLSLF_ 0 0 0 REV__ENSG00000171815|ENST00000306549|PCDHB1 REV__ENSG00000171815|ENST00000306549|PCDHB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2650146484375 2 491.266207 980.517862 -0.51539 -0.00025319 -0.15402 -7.5667E-05 -0.66942 -0.00032886 491.26617084197414 56.159 0.27462 55.674 55.512 55.787 -0.48554 21 13 2 0 0 0 0.039985 1 30453 30453 49.933 6.1606 1 4899500 + 66425 22605 44228 45228 77531 77531 0.026823478320579852 TVQYRPGF 8 Unmodified _TVQYRPGF_ 0 0 0 ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 ENSG00000012232|ENST00000220562|EXTL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2534484863281 2 484.253434 966.492316 NaN NaN NaN NaN NaN NaN NaN 91.783 1 91.783 91.283 92.283 0 0 0 0 0.97444 1 50756 50756 2.8892 0 1 66426 461 44229 45229 77532 77532 0.0077291810027873 TVQYSVAQY 9 Unmodified _TVQYSVAQY_ 0 0 0 REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF REV__ENST00000413474.5_1_3:195711124-195712546:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.76025390625 2 529.761289 1057.50803 0.89035 0.00047167 -2.4127 -0.0012782 -1.5223 -0.00080648 529.7593498165081 42.413 0.34126 37.729 37.544 37.885 -4.6846 45 22 3 0 0 0 0.25681 1 25570 25570 19.257 1.1106 1 40427000 + 66427 26733 44230 45230 77533 77533 -0.018428401733444844 TVRAEDQVY 9 Unmodified _TVRAEDQVY_ 0 0 0 nc|ENSG00000122550|Q8IXQ5-2|KLHL7;ENSG00000122550|ENST00000339077|KLHL7;nc|ENSG00000122550|Q8IXQ5-5|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 nc|ENSG00000122550|Q8IXQ5-2|KLHL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2706298828125 2 540.769645 1079.52474 -0.17046 -9.2178E-05 -0.11954 -6.4643E-05 -0.29 -0.00015682 540.7696872363 23.675 0.24294 23.675 23.548 23.791 0 22 12 2 0 0 0 0.20428 1 12070 12070 22.736 10.496 1 710450 66428 3646 44231 45231 77534 77534 -0.011843392873743142 TVRCYLIY 8 Unmodified _TVRCYLIY_ 0 0 0 nc|ENSG00000113971|Q7Z494-6|NPHP3;ENSG00000113971|ENST00000337331|NPHP3;ENST00000476742.1_1_3:132424565-132434018:-|nuORF;nc|ENSG00000113971|Q7Z494-3|NPHP3 nc|ENSG00000113971|Q7Z494-6|NPHP3 nc|ENSG00000113971|Q7Z494-6|NPHP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7774047851562 2 515.773145 1029.53174 0.45103 0.00023263 4.4252 0.0022824 4.8763 0.002515 515.7769538475787 71.598 0.43633 71.122 70.927 71.363 -0.47609 40 17 3 0 0 0 0.76859 1 39249 39249 11.114 3.8252 1 1842500 66429 3011 44232 45232 77535 77535 0.018153020594809277 TVRDWHWPENE 11 Unmodified _TVRDWHWPENE_ 0 0 0 REV__ENST00000244061.5_1_20:48568687-48568888:+|nuORF REV__ENST00000244061.5_1_20:48568687-48568888:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 734.830810546875 2 734.83384 1467.65313 0.48084 0.00035334 -0.11689 -8.5897E-05 0.36395 0.00026744 734.8334931596465 51.989 0.31575 51.93 51.751 52.067 -0.058918 46 14 4 0 0 0 0.71036 2 28114 28114;28218 3.2813 0 1 16557000 + 66430 24853 44233 45233 77536;77537 77536 -0.06199404044309631 TVRDWHWPENE 11 Unmodified _TVRDWHWPENE_ 0 0 0 REV__ENST00000244061.5_1_20:48568687-48568888:+|nuORF REV__ENST00000244061.5_1_20:48568687-48568888:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 734.83384 1467.65313 -0.36032 -0.00026478 -1.4904 -0.0010952 -1.8508 -0.00136 734.8323875415285 52.04 0.22671 52.04 51.996 52.223 0 0.055206 -0.0018549 NaN 3.2813 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1492600 + 66431 24853 44233 45233 -0.06199404044309631 TVREQDQSF 9 Unmodified _TVREQDQSF_ 0 0 0 ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB ENST00000342222.6_1_8:42151073-42188494:+|nuORF ENST00000342222.6_1_8:42151073-42188494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2642822265625 2 555.264727 1108.5149 NaN NaN NaN NaN NaN NaN NaN 20.748 1 20.748 20.248 21.248 0 0 0 0 0.43483 1 10455 10455 18.146 3.3081 1 66432 2199 44234 45234 77538 77538 -0.03501527292769424 TVRHDRKGRA 10 Unmodified _TVRHDRKGRA_ 0 0 0 REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF REV__ENST00000533614.5_1_1:249151936-249153183:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2513732910156 3 399.230405 1194.66939 1.0168 0.00040593 -2.7504 -0.0010981 -1.7336 -0.00069212 399.22921322612206 50.392 0.28487 50.344 50.23 50.515 -0.048828 19 13 2 0 0 0 0.23926 1 27302 27302 1.5923 1.3233 1 1358400 + 66433 28483 44235 45235 77539 77539 0.0798376670311427 TVRHIESMI 9 Unmodified _TVRHIESMI_ 0 0 0 ENST00000474964.5_1_3:127323572-127340613:+|nuORF;ENSG00000073111|ENST00000265056|MCM2;ENST00000468414.1_1_3:127336783-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF ENST00000474964.5_1_3:127323572-127340613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7951049804688 2 543.292233 1084.56991 1.1076 0.00060175 -0.82391 -0.00044763 0.28369 0.00015413 543.2912121647059 94.405 0.64968 88.229 87.96 88.61 -6.1757 81 37 3 0 0 0 0.41742 1 62409 62409 11.64 1.4569 1 11610000 66434 13944 44236 45236 77540 77540 0.031011879741527082 TVRIQYEF 8 Unmodified _TVRIQYEF_ 0 0 0 REV__ENSG00000101384|ENST00000254958|JAG1 REV__ENSG00000101384|ENST00000254958|JAG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2793579101562 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 67.979 1 67.979 67.479 68.479 0 0 0 0 0.97444 1 37902 37902 2.5775 0 1 + 66435 18166 44237 45237 77541 77541 0.019654564432130428 TVRIWDFL 8 Unmodified _TVRIWDFL_ 0 0 0 ENSG00000136709|ENST00000322313|WDR33;ENST00000409658.7_1_2:128520603-128520774:-|nuORF;nc|ENSG00000136709|Q9C0J8-3|WDR33 ENSG00000136709|ENST00000322313|WDR33 ENSG00000136709|ENST00000322313|WDR33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1051.065063476562 1 1049.57784 1048.57057 0.5384 0.0005651 -0.72482 -0.00076076 -0.18642 -0.00019566 1050.580262292913 32.662 0.056839 28.806 28.776 28.832 -3.8562 4 2 2 0 0 0 0.80143 1 18626 18626 5.7604 0 1 5839300 66436 4846 44238 45238 77542 77542 0.04822350685503807 TVRQIQEEM 9 Oxidation (M) _TVRQIQEEM(Oxidation (M))_ TVRQIQEEM(1) TVRQIQEEM(86) 0 0 1 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.283203125 2 575.282063 1148.54957 1.1554 0.00066471 0.47393 0.00027265 1.6294 0.00093735 575.2824264006824 19.831 0.43122 17.174 16.938 17.369 -2.6564 44 26 2 0 0 0 0.0089732 1 10541 10541 86.332 46.382 1 3178900 66437 8021 44239 45239 77543 77543 1365 -0.018760274763280904 TVRQIQEEM 9 Unmodified _TVRQIQEEM_ 0 0 0 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 ENSG00000170779|ENST00000336219|CDCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.286865234375 2 567.284605 1132.55466 1.5278 0.00086672 1.819 0.0010319 3.3469 0.0018986 567.286311392015 34.003 0.36028 30.018 29.824 30.184 -3.9853 40 19 3 0 0 0 0.010362 2 19641 19504;19641 76.825 32.966 1 15366000 66438 8021 44239 45240 77544;77545 77545 -0.0063172361371925945 TVRTLGRP 8 Unmodified _TVRTLGRP_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.A3307T|1|0.15|ENSG00000039139|chr5:13766158-13766158|C/T|missense_variant ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.27490234375 2 450.274701 898.534849 0.50216 0.00022611 -0.078707 -3.544E-05 0.42345 0.00019067 450.27451827360505 82.645 0.48783 82.148 81.892 82.38 -0.49751 49 20 3 0 0 0 0.80992 1 45160 45160 0.69038 0 1 4591100 66439 641 44240 45241 77546 77546 0.08152313228515595 TVRYFCYG 8 Unmodified _TVRYFCYG_ 0 0 0 ENSG00000178234|ENST00000430044|GALNT11;nc|ENSG00000178234|Q8NCW6-2|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 ENSG00000178234|ENST00000430044|GALNT11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7335205078125 2 504.73402 1007.45349 NaN NaN NaN NaN NaN NaN NaN 69.047 1 69.047 68.547 69.547 0 0 0 0 0.97444 1 38475 38475 2.8892 0.31174 1 66440 8738 44241 45242 77547 77547 -0.04994130525744822 TVRYGALEL 9 Unmodified _TVRYGALEL_ 0 0 0 ENSG00000128310|ENST00000249041|GALR3 ENSG00000128310|ENST00000249041|GALR3 ENSG00000128310|ENST00000249041|GALR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2872314453125 2 511.287474 1020.5604 -0.71471 -0.00036542 0.044699 2.2854E-05 -0.67001 -0.00034257 511.28714601859366 56.099 0.18208 55.614 55.471 55.654 -0.48554 12 8 2 0 0 0 0.40476 1 30460 30460 12.241 0 1 1887000 66441 4062 44242 45243 77548 77548 0.05093742960275449 TVSAQPAQLRF 11 Unmodified _TVSAQPAQLRF_ 0 0 0 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 REV__ENSG00000156675|ENST00000330843|RAB11FIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3375854492188 2 609.335487 1216.65642 0.75769 0.00046169 2.8861 0.0017586 3.6438 0.0022203 609.3371605313181 74.824 0.28595 74.348 74.231 74.517 -0.47588 17 11 2 0 0 0 0.68427 1 40941 40941 5.7319 0.97584 1 638120 + 66442 21340 44243 45244 77549 77549 0.05675890800353045 TVSAVCQIY 9 Carbamidomethyl (C) _TVSAVC(Carbamidomethyl (C))QIY_ TVSAVC(1)QIY TVSAVC(57)QIY 0 1 0 ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.757568359375 2 520.757692 1039.50083 0.74645 0.00038872 0.10244 5.3348E-05 0.8489 0.00044207 520.757836428754 47.474 0.37202 47.474 47.314 47.686 0 25 16 2 0 0 0 0.026094 1 26004 26004 57.471 32.072 1 5195600 66443 11412 44244 45245 77550 77550 966 -0.017338960454253538 TVSAVCQIY 9 Carbamidomethyl (C) _TVSAVC(Carbamidomethyl (C))QIY_ 0 1 0 ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF ENST00000281172.9_1_12:15822752-15835827:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.757692 1039.50083 0.5036 0.00026225 0.063275 3.2951E-05 0.56688 0.0002952 521.2587889131398 47.8 0.12873 47.448 47.387 47.516 -0.3526 -0.013102 -3.3402E-05 NaN 57.471 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1443400 66444 11412 44244 45245 966 -0.017338960454253538 TVSDAILRY 9 Unmodified _TVSDAILRY_ 0 0 0 nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.28515625 2 519.284931 1036.55531 0.59319 0.00030803 -0.096834 -5.0285E-05 0.49635 0.00025775 519.2847795087656 49.211 0.37411 49.211 49.042 49.416 0 54 17 5 0 0 0 0.023481 2 27139 27024;27139 60.074 19.324 1 98147000 66445 266 44245 45246 77551;77552 77552 0.03849439097643881 TVSDAILRY 9 Unmodified _TVSDAILRY_ 0 0 0 nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2848510742188 2 519.284931 1036.55531 0.66632 0.00034601 -0.33514 -0.00017403 0.33118 0.00017198 519.2848466425256 49.565 0.36885 49.173 48.984 49.353 -0.3923 50 18 4 0 0 0 0.023481 2 26590 26590;26699 60.074 27.768 1 67450000 66446 266 44245 45246 77553;77554 77553 0.03849439097643881 TVSDAILRY 9 Unmodified _TVSDAILRY_ 0 0 0 nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 nc|ENSG00000002919|Q9Y5W9-2|SNX11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2841796875 2 519.284931 1036.55531 1.2167 0.00063181 -0.22663 -0.00011769 0.99005 0.00051412 519.2847040382886 55.41 0.55866 49.489 49.207 49.766 -5.9211 115 34 4 0 0 0 0.020973 3 35116 35116;35260;35388 62.573 19.748 1 314260000 66447 266 44245 45246 77555;77556;77557 77555 0.03849439097643881 TVSFCFCWTF 10 Unmodified _TVSFCFCWTF_ 0 0 0 REV__ENSG00000179820|ENST00000391770|MYADM REV__ENSG00000179820|ENST00000391770|MYADM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8321533203125 2 620.76192 1239.50929 -0.2631 -0.00016332 0.79398 0.00049287 0.53088 0.00032955 620.762402981013 55.946 0.27909 55.946 55.836 56.115 0 37 15 3 0 0 0 0.22667 1 31201 31201 15.847 9.124 1 9284500 + 66448 23120 44246 45247 77558 77558 -0.1008866540046256 TVSFDEESY 9 Unmodified _TVSFDEESY_ 0 0 0 nc|nan|Q96LP6-2|C12orf42;ENSG00000179088|ENST00000548883|C12orf42 nc|nan|Q96LP6-2|C12orf42 nc|nan|Q96LP6-2|C12orf42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.724853515625 2 538.724569 1075.43459 0.49508 0.00026671 4.0074 0.0021589 4.5025 0.0024256 538.7264182255602 53.14 0.34021 53.14 53.039 53.38 0 24 14 3 0 0 0 0.39863 1 29488 29488 12.532 0.89125 1 2006600 66449 8809 44247 45248 77559 77559 -0.1001143340647559 TVSGIQVRY 9 Unmodified _TVSGIQVRY_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.78369140625 2 511.785099 1021.55564 0.28146 0.00014405 -0.078791 -4.0324E-05 0.20267 0.00010372 511.7851523921142 39.761 0.25779 39.761 39.616 39.873 0 33 12 3 0 0 0 0.0086722 1 21299 21299 88.954 20.873 1 11409000 66450 4133 44248 45249 77560 77560 0.045728588175165896 TVSGIQVRY 9 Unmodified _TVSGIQVRY_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7853088378906 2 511.785099 1021.55564 0.10463 5.3546E-05 -0.21869 -0.00011192 -0.11406 -5.8377E-05 511.7850206728812 40.068 0.29374 39.771 39.61 39.903 -0.29716 35 13 3 0 0 0 0.009483 2 21133 21133;21238 81.89 37.483 1 19801000 66451 4133 44248 45249 77561;77562 77561 0.045728588175165896 TVSGIQVRY 9 Unmodified _TVSGIQVRY_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7848510742188 2 511.785099 1021.55564 0.62347 0.00031909 -0.10899 -5.5779E-05 0.51449 0.00026331 511.7851763543131 39.722 0.18451 39.727 39.607 39.791 0.0050545 15 8 2 0 0 0 0.19127 1 21165 21165 24.021 5.8742 1 1384400 66452 4133 44248 45249 77563 77563 0.045728588175165896 TVSGIQVRY 9 Unmodified _TVSGIQVRY_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7854309082031 2 511.785099 1021.55564 0.38572 0.0001974 0.44099 0.00022569 0.82671 0.0004231 511.7853060506825 44.932 0.5091 40.08 39.801 40.31 -4.852 85 35 3 0 0 0 0.013041 3 27469 27328;27469;27616 71.922 32.156 1 115530000 66453 4133 44248 45249 77564;77565;77566 77565 0.045728588175165896 TVSGSAPVL 9 Unmodified _TVSGSAPVL_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.462646484375 1 830.46181 829.454533 0.18538 0.00015395 0.24198 0.00020096 0.42736 0.0003549 830.4620153996589 42.269 0.38284 42.269 42.125 42.507 0 48 18 4 0 0 0 0.0083087 2 22948 22837;22948 97.075 35.717 1 29539000 66454 1437 44249 45250 77567;77568 77568 0.03298407114800739 TVSGSAPVL 9 Unmodified _TVSGSAPVL_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 830.4619750976562 1 830.46181 829.454533 0.75986 0.00063103 0.087538 7.2697E-05 0.84739 0.00070373 830.46176974716 48.923 0.53123 43.527 43.186 43.717 -5.3961 58 32 2 0 0 0 0.0048787 2 30469 30469;30595 117.6 56.241 1 101390000 66455 1437 44249 45250 77569;77570 77569 0.03298407114800739 TVSGSAPVL 9 Unmodified _TVSGSAPVL_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MSMS AL20221201_MKP_PDAC_01 4 415.7347106933594 2 415.734543 829.454533 NaN NaN NaN NaN NaN NaN NaN 48.81 1 43.414 42.914 43.914 -5.3961 0 0 0 0.13852 1 30433 30433 38.151 0 1 66456 1437 44249 45250 77571 77571 0.03298407114800739 TVSGVSLTF 9 Unmodified _TVSGVSLTF_ 0 0 0 ENST00000288344.14_1_21:40714727-40714814:-|nuORF ENST00000288344.14_1_21:40714727-40714814:-|nuORF ENST00000288344.14_1_21:40714727-40714814:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.4880981445312 1 910.488024 909.480748 0.063067 5.7422E-05 0.48196 0.00043882 0.54502 0.00049624 910.4882840173764 68.414 0.33192 67.933 67.764 68.096 -0.48071 29 14 3 0 0 0 0.042911 1 37340 37340 48.346 14.243 1 3661200 66457 11453 44250 45251 77572 77572 0.022386762862765863 TVSIDVIVY 9 Unmodified _TVSIDVIVY_ 0 0 0 nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A nc|ENSG00000166736|P46098-3|HTR3A nc|ENSG00000166736|P46098-3|HTR3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2640380859375 2 504.784233 1007.55391 0.62849 0.00031725 -0.67159 -0.00033901 -0.0431 -2.1756E-05 504.783993771458 72.682 0.37437 72.682 72.487 72.861 0 42 17 4 0 0 0 0.16785 1 40541 40541 23.148 6.2061 1 7187300 66458 7524 44251 45252 77573 77573 0.05043805008892832 TVSIIDRF 8 Unmodified _TVSIIDRF_ 0 0 0 nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 nc|ENSG00000134057|P14635-2|CCNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7691040039062 2 475.768917 949.523281 0.77842 0.00037035 -1.0038 -0.00047756 -0.22534 -0.00010721 475.76850432315445 63.127 0.46186 56.951 56.78 57.242 -6.1757 34 25 2 0 0 0 0.12533 2 40743 40743;40881 92.491 24.411 1 21525000 66459 4553 44252 45253 77574;77575 77574 0.046500714145167876 TVSKFASI 8 Unmodified _TVSKFASI_ 0 0 0 ENSG00000152484|ENST00000282344|USP12 ENSG00000152484|ENST00000282344|USP12 ENSG00000152484|ENST00000282344|USP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7448120117188 2 426.744911 851.475269 0.2747 0.00011722 -0.088051 -3.7575E-05 0.18664 7.965E-05 426.74484259646107 58.025 0.61227 58.025 57.754 58.366 0 34 24 2 0 0 0 0.75262 1 32429 32429 12.532 0 1 796730 66460 6190 44253 45254 77576 77576 0.04358997494466621 TVSRLIFTF 9 Unmodified _TVSRLIFTF_ 0 0 0 ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3138427734375 2 542.313492 1082.61243 0.39111 0.0002121 0.8284 0.00044925 1.2195 0.00066135 542.3135864055582 78.629 0.21915 78.681 78.532 78.752 0.052452 17 8 3 0 0 0 0.029718 1 43438 43438 55.503 17.529 1 1810900 66461 7775 44254 45255 77577 77577 0.07442906374035374 TVSSVNEAF 9 Unmodified _TVSSVNEAF_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 953.4564819335938 1 953.457453 952.450176 -0.71787 -0.00068446 0.48108 0.00045869 -0.23679 -0.00022577 953.4575528168418 41.579 0.22888 41.579 41.48 41.709 0 22 11 3 0 0 0 0.0071894 1 22431 22431 111.29 36.358 1 6797400 66462 4780 44255 45256 77578 77578 -0.02795102098764346 TVSSVNEAF 9 Unmodified _TVSSVNEAF_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2317504882812 2 477.232364 952.450176 -0.25477 -0.00012158 -1.3795 -0.00065833 -1.6342 -0.00077991 477.23223634396413 41.55 0.32627 41.55 41.404 41.731 0 45 16 4 0 0 0 0.022193 1 22445 22445 61.357 32.871 1 17815000 66463 4780 44255 45256 77579 77579 -0.02795102098764346 TVSSVNEAF 9 Unmodified _TVSSVNEAF_ 0 0 0 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 ENSG00000136045|ENST00000412830|PWP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 953.4586791992188 1 953.457453 952.450176 0.7915 0.00075466 0.082578 7.8734E-05 0.87408 0.0008334 953.4574131768115 48.395 0.37479 43.161 42.958 43.333 -5.2339 36 22 2 0 0 0 0.0055767 2 30164 30045;30164 115.69 37.543 1 19622000 66464 4780 44255 45256 77580;77581 77581 -0.02795102098764346 TVSWWRRR 8 Unmodified _TVSWWRRR_ 0 0 0 REV__ENST00000380486.3_2_21:43339056-43362335:-|nuORF REV__ENST00000380486.3_2_21:43339056-43362335:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8811340332031 3 382.880825 1145.62064 0.012729 4.8735E-06 0.44568 0.00017064 0.45841 0.00017552 382.881040632266 16.75 0.29494 16.755 16.587 16.882 0.0050545 49 18 4 0 0 0 0.79669 1 8363 8363 6.2058 6.2058 1 9395900 + 66465 26312 44256 45257 77582 77582 0.05365898134027702 TVTAMDVVY 9 Unmodified _TVTAMDVVY_ 0 0 0 ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8 ENSG00000278705|ENST00000377745|H4C2 ENSG00000278705|ENST00000377745|H4C2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.7694702148438 2 499.746793 997.479033 0.93573 0.00046763 -2.4633 -0.001231 -1.5276 -0.0007634 499.7453999921172 66.077 0.48861 59.901 59.709 60.197 -6.1757 35 27 2 0 0 0 0.11012 1 42871 42871 36.044 12.896 1 17289000 66466 6581 44257 45258 77583 77583 -0.0198070079397894 TVTDVIEAV 9 Unmodified _TVTDVIEAV_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7586364746094 2 473.758215 945.501877 0.60977 0.00028888 -0.63511 -0.00030089 -0.025335 -1.2003E-05 473.75816986437087 60.614 0.22436 60.614 60.494 60.718 0 15 9 2 0 0 0 0.087258 1 33819 33819 36.044 12.896 1 953430 66467 3227 44258 45259 77584 77584 0.02694641595144276 TVTEAGMAIAM 11 2 Oxidation (M) _TVTEAGM(Oxidation (M))AIAM(Oxidation (M))_ TVTEAGM(1)AIAM(1) TVTEAGM(61)AIAM(61) 0 0 2 ENSG00000178035|ENST00000326739|IMPDH2;ENST00000496837.1_1_3:49065635-49066789:-|nuORF;ENST00000485500.1_1_3:49065635-49065977:-|nuORF ENSG00000178035|ENST00000326739|IMPDH2 ENSG00000178035|ENST00000326739|IMPDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.759033203125 2 563.759575 1125.5046 -0.38897 -0.00021929 -0.76625 -0.00043198 -1.1552 -0.00065127 563.7595825912313 29.933 0.32729 29.933 29.793 30.12 0 58 17 5 0 0 0 0.016068 2 15482 15482;15585 61.357 17.499 1 9937800 66468 8724 44259 45260 77585;77586 77585 1474;1475 -0.053135943338475045 TVTEVLLKY 9 Unmodified _TVTEVLLKY_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.3130493164062 2 533.313158 1064.61176 0.50784 0.00027084 -0.10144 -5.4099E-05 0.4064 0.00021674 533.3130438664058 57.96 0.57447 57.96 57.716 58.29 0 70 23 5 0 0 0 0.013041 2 32278 32168;32278 71.922 42.841 1 58646000 66469 1414 44260 45261 77587;77588 77588 0.08204066934331422 TVTEVLLKY 9 Unmodified _TVTEVLLKY_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3123168945312 2 533.313158 1064.61176 0.20682 0.0001103 -0.35223 -0.00018785 -0.14542 -7.7552E-05 533.3128274409275 58.399 0.6339 57.908 57.618 58.252 -0.49079 120 30 6 0 0 0 0.0086722 3 31670 31670;31771;31877 88.954 54.851 1 342100000 66470 1414 44260 45261 77589;77590;77591 77589 0.08204066934331422 TVTEVLLKY 9 Unmodified _TVTEVLLKY_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3128662109375 2 533.313158 1064.61176 0.79561 0.00042431 -1.7413 -0.00092866 -0.94568 -0.00050435 533.3117503680052 58.025 0.37481 57.959 57.775 58.15 -0.066036 62 18 5 0 0 0 0.032796 1 31596 31596 53.833 30.684 1 37056000 66471 1414 44260 45261 77592 77592 0.08204066934331422 TVTEVLLKY 9 Unmodified _TVTEVLLKY_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3139038085938 2 533.313158 1064.61176 1.3732 0.00073233 -0.22961 -0.00012245 1.1436 0.00060988 533.3128578549764 64.072 0.99299 57.896 57.564 58.557 -6.1757 204 54 5 0 0 0 0.0082353 5 41423 41280;41423;41548;41686;41817 96.111 56.154 1 1158500000 66472 1414 44260 45261 77593;77594;77595;77596;77597 77594 0.08204066934331422 TVTEVLLKY 9 Unmodified _TVTEVLLKY_ 0 0 0 nc|ENSG00000085721|Q9NYV6-3|RRN3;ENSG00000085721|ENST00000198767|RRN3;nc|ENSG00000085721|Q9NYV6-2|RRN3;ENST00000427965.6_1_16:29086353-29124388:+|nuORF;ENST00000551901.5_1_16:21823661-21831677:-|nuORF;ENST00000566038.1_1_16:29086353-29102074:+|nuORF;nc|ENSG00000103472|A6NIE6|RRN3P2;ENST00000564580.5_1_16:29086353-29108616:+|nuORF nc|ENSG00000085721|Q9NYV6-3|RRN3 nc|ENSG00000085721|Q9NYV6-3|RRN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1067.088623046875 1 1065.61904 1064.61176 1.2484 0.0013303 0.11305 0.00012047 1.3614 0.0014508 1065.6195696603234 64.102 0.28419 57.926 57.752 58.036 -6.1757 23 14 2 0 0 0 0.008513 1 41444 41444 99.755 53.734 1 27874000 66473 1414 44260 45261 77598 77598 0.08204066934331422 TVTEVVVPF 9 Unmodified _TVTEVVVPF_ 0 0 0 ENSG00000169403|ENST00000373857|PTAFR ENSG00000169403|ENST00000373857|PTAFR ENSG00000169403|ENST00000373857|PTAFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7799072265625 2 495.778951 989.543348 NaN NaN NaN NaN NaN NaN NaN 78.714 1 78.714 78.214 79.214 0 0 0 0 0.7243 1 43736 43736 8.5933 0.68312 1 66474 7872 44261 45262 77599 77599 0.04815822354487409 TVTINTLGV 9 Unmodified _TVTINTLGV_ 0 0 0 REV__nc|ENSG00000141956|P57071|PRDM15 REV__nc|ENSG00000141956|P57071|PRDM15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2657165527344 2 459.26875 916.522947 0.86586 0.00039766 -0.70683 -0.00032463 0.15903 7.3036E-05 459.2682400442978 77.872 0.59875 71.696 71.409 72.008 -6.1757 83 33 3 0 0 0 0.06187 1 50835 50835 42.095 4.1206 1 60494000 + 66475 29667 44262 45263 77600 77600 0.06134651694674176 TVTKSNGLTVK 11 Unmodified _TVTKSNGLTVK_ 0 0 0 REV__ENSG00000122644|ENST00000651779|ARL4A REV__ENSG00000122644|ENST00000651779|ARL4A MSMS AL20221201_MKP_PDAC_01 4 383.2272338867188 3 383.227556 1146.66084 NaN NaN NaN NaN NaN NaN NaN 66.862 1 60.686 60.186 61.186 -6.1757 0 0 0 0.80907 1 43516 43516 11.631 5.4395 1 + 66476 19351 44263 45264 77601 77601 0.09337355223283339 TVTLNMEKY 9 Unmodified _TVTLNMEKY_ 0 0 0 ENSG00000004975|ENST00000005340|DVL2;ENST00000478247.1_1_3:183882805-183888540:+|nuORF;ENSG00000161202|ENST00000313143|DVL3;nc|ENSG00000161202|Q92997-2|DVL3 ENSG00000004975|ENST00000005340|DVL2;ENSG00000161202|ENST00000313143|DVL3 ENSG00000161202|ENST00000313143|DVL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8545532226562 3 366.854842 1097.5427 -0.54933 -0.00020153 0.48132 0.00017658 -0.068013 -2.4951E-05 366.8550333565905 17.801 0.15959 17.801 17.7 17.859 0 52 31 2 0 0 0 0.55775 1 8758 8758 2.2828 0 1 1201500 66477 292;6786 44264 45265 77602 77602 -0.002173403568804133 TVTLTVAV 8 Unmodified _TVTLTVAV_ 0 0 0 nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253873|ENST00000398587|PCDHGA11;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000253767|ENST00000398604|PCDHGA8;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4 nc|ENSG00000253159|O60330-2|PCDHGA12;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4 nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2477416992188 2 402.247286 802.48002 -0.16193 -6.5134E-05 1.4192 0.00057085 1.2572 0.00050572 402.24780500137035 52.343 0.24411 52.343 52.223 52.467 0 15 10 2 0 0 0 0.2655 1 28984 28984 59.795 10.126 1 1267800 66478 10772;10758;10764;10767;10768;10849 44265 45266 77603 77603 0.0708788163723284 TVTRAPVPL 9 Unmodified _TVTRAPVPL_ 0 0 0 ENST00000308595.9_1_11:67053337-67053520:+|nuORF ENST00000308595.9_1_11:67053337-67053520:+|nuORF ENST00000308595.9_1_11:67053337-67053520:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.25048828125 2 477.292559 952.570566 0.65234 0.00031136 0.48235 0.00023022 1.1347 0.00054158 477.29283732742647 60.201 0.25394 60.201 60.068 60.322 0 22 10 3 0 0 0 0.18118 1 33496 33496 12.532 0 1 1053800 66479 11656 44266 45267 77604 77604 0.09238350685518526 TVTSATIVY 9 Unmodified _TVTSATIVY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.5140991210938 1 954.514239 953.506963 0.072285 6.8998E-05 0.50298 0.0004801 0.57527 0.0005491 954.5145353299662 47.986 0.28218 47.986 47.81 48.092 0 30 13 3 0 0 0 0.038285 1 26239 26239 50.855 14.811 1 6307600 66480 293 44267 45268 77605 77605 0.028349454577551114 TVTSATIVY 9 Unmodified _TVTSATIVY_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1;ENST00000594243.1_1_19:18965730-18966052:+|nuORF ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7610778808594 2 477.760758 953.506963 0.50014 0.00023895 -1.0762 -0.00051415 -0.57602 -0.0002752 477.7606374715817 47.971 0.24057 47.971 47.831 48.071 0 22 11 2 0 0 0 0.052168 1 26264 26264 44.407 14.182 1 6184800 66481 293 44267 45268 77606 77606 0.028349454577551114 TVTTNQAA 8 Unmodified _TVTTNQAA_ 0 0 0 nc|ENSG00000116106|P54764-2|EPHA4;ENSG00000116106|ENST00000281821|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 nc|ENSG00000116106|P54764-2|EPHA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2037963867188 2 403.20615 804.397747 NaN NaN NaN NaN NaN NaN NaN 17.904 1 17.909 17.409 18.409 0.0050564 0 0 0 0.97444 1 9052 9052 2.5775 0 1 66482 3191 44268 45269 77607 77607 -0.012276404417093545 TVTTRYVF 8 Unmodified _TVTTRYVF_ 0 0 0 ENST00000594295.5_1_19:52592212-52597316:-|nuORF ENST00000594295.5_1_19:52592212-52597316:-|nuORF ENST00000594295.5_1_19:52592212-52597316:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.7354736328125 2 493.768917 985.523281 1.4012 0.00069189 -3.5205 -0.0017383 -2.1192 -0.0010464 493.7681435538553 41.592 0.22065 36.984 36.923 37.144 -4.6079 20 13 2 0 0 0 8.7369 1 25033 25033 15.847 0 1 12385000 66483 15748 44269 45270 77608 77608 0.0299407141451411 TVTVLRHE 8 Unmodified _TVTVLRHE_ 0 0 0 REV__nc|ENSG00000105639|P52333-2|JAK3 REV__nc|ENSG00000105639|P52333-2|JAK3 MSMS AL20221201_MKP_PDAC_01 4 477.7741088867188 2 477.771991 953.529429 NaN NaN NaN NaN NaN NaN NaN 85.562 1 79.386 78.886 79.886 -6.1757 0 0 0 0.83301 1 56358 56358 21.747 0 1 + 66484 18442 44270 45271 77609 77609 0.05080589646047429 TVTVVAPITL 10 Unmodified _TVTVVAPITL_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3158264160156 2 507.3157 1012.61685 NaN NaN NaN NaN NaN NaN NaN 69.002 1 69.002 68.502 69.502 0 0 0 0 0.66657 1 38451 38451 18.146 4.2403 1 + 66485 22687 44271 45272 77610 77610 0.11104370796954299 TVTVVAPITL 10 Unmodified _TVTVVAPITL_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3159484863281 2 507.3157 1012.61685 -0.35446 -0.00017982 1.0773 0.00054655 0.72287 0.00036672 507.3162240307165 69.432 0.37016 68.953 68.764 69.134 -0.47903 41 15 4 0 0 0 0.074936 1 38002 38002 52.268 0.63854 1 9865700 + 66486 22687 44271 45272 77611 77611 0.11104370796954299 TVTVVAPITL 10 Unmodified _TVTVVAPITL_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.3157 1012.61685 0.78352 0.00039749 0.6734 0.00034162 1.4569 0.00073912 507.31636565744213 68.917 0.21118 68.942 68.793 69.004 0.025146 -0.0054562 -0.00035267 NaN 52.268 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1414500 + 66487 22687 44271 45272 0.11104370796954299 TVVAASWDAL 10 Unmodified _TVVAASWDAL_ 0 0 0 ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7723999023438 2 516.771657 1031.52876 0.28206 0.00014576 0.28372 0.00014662 0.56577 0.00029238 516.7718589031095 63.906 0.88306 63.906 63.482 64.365 0 77 37 3 0 0 0 0.66569 1 35796 35796 6.7232 1.9672 1 1494400 66488 7230 44272 45273 77612 77612 0.014257502063173888 TVVDLSEVY 9 Unmodified _TVVDLSEVY_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;CCDC93|p.N393Mfs*4|1|0.14|ENSG00000125633|chr2:117948151-117948151|T/-|frameshift_variant ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7649536132812 2 512.763497 1023.51244 0.27494 0.00014098 1.629 0.00083527 1.9039 0.00097625 512.7643926096912 63.325 0.34927 63.325 63.096 63.445 0 23 15 2 0 0 0 0.2001 1 35281 35281 23.148 6.2061 1 2646000 66489 3864 44273 45274 77613 77613 0.0016262424956039467 TVVDLSEVY 9 Unmodified _TVVDLSEVY_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;CCDC93|p.N393Mfs*4|1|0.14|ENSG00000125633|chr2:117948151-117948151|T/-|frameshift_variant ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MSMS AL20221201_MKP_PDAC_01 4 512.7638549804688 2 512.763497 1023.51244 NaN NaN NaN NaN NaN NaN NaN 71.423 1 65.247 64.747 65.747 -6.1757 0 0 0 0.17247 1 46681 46681 34.102 0 1 66490 3864 44273 45274 77614 77614 0.0016262424956039467 TVVDVLTSY 9 Unmodified _TVVDVLTSY_ 0 0 0 nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS nc|ENSG00000119509|Q9Y283-2|INVS nc|ENSG00000119509|Q9Y283-2|INVS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7664184570312 2 498.76604 995.517527 0.47342 0.00023613 -0.097141 -4.845E-05 0.37628 0.00018768 498.7661180017438 67.88 0.24899 67.88 67.743 67.992 0 23 11 3 0 0 0 0.2001 1 37826 37826 23.148 10.617 1 1176200 66491 3440 44274 45275 77615 77615 0.019589281121852764 TVVDVLTSY 9 Unmodified _TVVDVLTSY_ 0 0 0 nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS nc|ENSG00000119509|Q9Y283-2|INVS nc|ENSG00000119509|Q9Y283-2|INVS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7665710449219 2 498.76604 995.517527 0.33661 0.00016789 0.61533 0.0003069 0.95193 0.00047479 498.766377187661 68.427 0.27135 67.947 67.825 68.096 -0.48071 17 11 2 0 0 0 0.087258 1 37390 37390 36.044 23.513 1 1283500 66492 3440 44274 45275 77616 77616 0.019589281121852764 TVVENLPR 8 Unmodified _TVVENLPR_ 0 0 0 ENST00000461845.1_1_2:85822886-85823939:+|nuORF;ENSG00000168894|ENST00000306368|RNF181 ENST00000461845.1_1_2:85822886-85823939:+|nuORF ENST00000461845.1_1_2:85822886-85823939:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2657775878906 2 464.266542 926.51853 0.34812 0.00016162 -0.84749 -0.00039346 -0.49937 -0.00023184 464.26610362423025 40.394 0.17676 40.394 40.352 40.529 0 10 8 2 0 0 0 0.42423 1 21728 21728 42.095 0 1 2982600 66493 7810 44275 45276 77617 77617 0.05233187271744555 TVVGLTVVY 9 Unmodified _TVVGLTVVY_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 950.5573120117188 1 950.55571 949.548434 0.92402 0.00087834 1.2642 0.0012017 2.1882 0.00208 950.5572030077209 79.726 0.39133 73.55 73.32 73.711 -6.1757 43 23 2 0 0 0 0.010877 2 52272 52142;52272 77.984 27.129 1 18113000 66494 7947 44276 45277 77618;77619 77619 0.07164126217094235 TVVGLTVVY 9 Unmodified _TVVGLTVVY_ 0 0 0 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 ENSG00000170075|ENST00000367282|GPR37L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7810363769531 2 475.781493 949.548434 1.2896 0.00061356 -0.43965 -0.00020918 0.84994 0.00040438 475.78112431500296 79.703 0.49092 73.528 73.286 73.777 -6.1757 47 29 2 0 0 0 0.023164 2 52169 52169;52305 60.39 30.165 1 18288000 66495 7947 44276 45277 77620;77621 77620 0.07164126217094235 TVVGPSAAV 9 Unmodified _TVVGPSAAV_ 0 0 0 REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.7295837402344 2 400.729261 799.443968 -0.2468 -9.8899E-05 -0.097206 -3.8953E-05 -0.344 -0.00013785 400.7292482620339 52.222 0.36293 52.222 52.039 52.402 0 32 15 3 0 0 0 0.32871 1 28974 28974 15.847 0 1 4794700 + 66496 26648 44277 45278 77622 77622 0.03622424460365892 TVVNNWYII 9 Unmodified _TVVNNWYII_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000552077.5_1_12:113726380-113733878:+|nuORF;ENST00000551127.5_1_12:113726380-113729792:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1802978515625 3 374.537842 1120.5917 2.2073 0.00082671 0.40205 0.00015058 2.6093 0.00097729 374.538079217039 47.673 0.33568 42.439 42.229 42.565 -5.2339 23 19 2 0 0 0 0.20399 1 29511 29511 7.1017 2.9122 1 12147000 66497 9509 44278 45279 77623 77623 0.036223159943801875 TVVPLMFVN 9 Unmodified _TVVPLMFVN_ 0 0 0 ENST00000445336.2_1_X:74802783-74803698:+|nuORF ENST00000445336.2_1_X:74802783-74803698:+|nuORF ENST00000445336.2_1_X:74802783-74803698:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.9866027832031 2 510.283346 1018.55214 0.37638 0.00019206 -3.5037 -0.0017879 -3.1273 -0.0015958 510.28139861842993 19.947 0.21062 19.955 19.855 20.066 0.0078487 16 10 3 0 0 0 0.20139 1 10199 10199 10.824 0.75 1 1071500 66498 13454 44279 45280 77624 77624 0.043604727192928294 TVVQPLIVGY 10 Unmodified _TVVQPLIVGY_ 0 0 0 REV__POLG|p.A839V|1|0.18|ENSG00000140521|chr15:89321818-89321818|G/A|missense_variant REV__POLG|p.A839V|1|0.18|ENSG00000140521|chr15:89321818-89321818|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.822265625 2 544.82115 1087.62775 0.25777 0.00014044 0.44053 0.00024001 0.6983 0.00038045 544.8214955952611 71.258 0.38728 70.78 70.611 70.998 -0.47736 40 16 3 0 0 0 0.67033 1 39108 39108 6.2058 0.9089 1 3380600 + 66499 30076 44280 45281 77625 77625 0.08743773171249813 TVVQPLIVGY 10 Unmodified _TVVQPLIVGY_ 0 0 0 REV__POLG|p.A839V|1|0.18|ENSG00000140521|chr15:89321818-89321818|G/A|missense_variant REV__POLG|p.A839V|1|0.18|ENSG00000140521|chr15:89321818-89321818|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.82177734375 2 544.82115 1087.62775 1.0116 0.00055113 -0.14318 -7.8008E-05 0.86839 0.00047312 544.8210379553649 70.735 0.32362 70.771 70.592 70.915 0.035515 23 14 2 0 0 0 0.54684 1 38933 38933 13.906 1.6654 1 2280100 + 66500 30076 44280 45281 77626 77626 0.08743773171249813 TVVQYDDGF 9 Unmodified _TVVQYDDGF_ 0 0 0 REV__ENSG00000162989|ENST00000295101|KCNJ3 REV__ENSG00000162989|ENST00000295101|KCNJ3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.7760009765625 2 522.237647 1042.46074 0.82984 0.00043337 -1.9044 -0.00099455 -1.0746 -0.00056118 522.2369520664329 99.213 0.28941 93.037 92.807 93.097 -6.1757 21 16 2 0 0 0 0.18118 1 65976 65976 18.135 1.1927 1 19163000 + 66501 21714 44281 45282 77627 77627 -0.05879119444330172 TVVRNLEAY 9 Unmodified _TVVRNLEAY_ 0 0 0 ENSG00000143486|ENST00000271764|EIF2D;nc|ENSG00000143486|P41214-2|EIF2D ENSG00000143486|ENST00000271764|EIF2D ENSG00000143486|ENST00000271764|EIF2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7908325195312 2 532.790381 1063.56621 0.61213 0.00032613 -4.4433 -0.0023673 -3.8312 -0.0020412 532.7879295737573 36.881 0.40681 36.881 36.67 37.076 0 55 19 4 0 0 0 0.047714 1 19559 19559 45.74 15.103 1 14671000 66502 5519 44282 45283 77628 77628 0.036968414719467546 TVVSREVKE 9 Unmodified _TVVSREVKE_ 0 0 0 REV__ENST00000564961.1_1_16:27214833-27222512:+|nuORF REV__ENST00000564961.1_1_16:27214833-27222512:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1046.922607421875 1 1046.58405 1045.57677 0.93866 0.00098238 1.4327 0.0014995 2.3714 0.0024819 1047.5882207425823 61.529 0.097206 55.354 55.269 55.367 -6.1757 5 4 2 0 0 0 0.20139 1 39604 39604 3.5965 0 1 20920000 + 66503 21281 44283 45284 77629 77629 0.055808241263775926 TVVSVSHIY 9 Unmodified _TVVSVSHIY_ 0 0 0 ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7738342285156 2 502.7742 1003.53385 0.5797 0.00029146 -3.3042 -0.0016613 -2.7245 -0.0013698 502.77399137493086 43.179 0.40221 43.179 43.084 43.486 0 26 19 2 0 0 0 0.16226 1 23435 23435 26.884 3.7352 1 7297800 66504 5674 44284 45285 77630 77630 0.03222054068953639 TVVSVSHIY 9 Unmodified _TVVSVSHIY_ 0 0 0 ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ ENSG00000145214|ENST00000273814|DGKQ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 502.7742 1003.53385 -0.18028 -9.0638E-05 0.46794 0.00023527 0.28767 0.00014463 502.7743126168573 43.407 0.17574 43.096 42.989 43.164 -0.31039 -0.041318 0.00052029 NaN 26.884 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6483700 66505 5674 44284 45285 0.03222054068953639 TVVTQLLVY 9 Unmodified _TVVTQLLVY_ 0 0 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3095703125 2 518.307875 1034.6012 0.56241 0.0002915 0.27748 0.00014382 0.83989 0.00043532 518.307953910835 82.241 0.36165 81.746 81.557 81.919 -0.4952 32 14 3 0 0 0 0.07916 2 44983 44983;45087 37.974 10.345 1 2904900 66506 3862 44285 45286 77631;77632 77631 0.08528084279896575 TVVTQLLVY 9 Unmodified _TVVTQLLVY_ 0 0 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.8837280273438 2 518.307875 1034.6012 1.728 0.00089566 1.2107 0.00062749 2.9387 0.0015232 518.3078556623325 81.649 0.24438 81.709 81.559 81.803 0.059929 13 9 2 0 0 0 0.12183 1 45167 45167 26.884 6.43 1 1775300 66507 3862 44285 45286 77633 77633 0.08528084279896575 TVVTQLLVY 9 Unmodified _TVVTQLLVY_ 0 0 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.3079223632812 2 518.307875 1034.6012 1.0839 0.00056181 -0.3696 -0.00019157 0.71433 0.00037024 518.307786821504 90.529 0.36877 84.353 84.091 84.46 -6.1757 28 21 2 0 0 0 0.024882 1 59799 59799 58.679 26.373 1 10838000 66508 3862 44285 45286 77634 77634 0.08528084279896575 TVVTQLLVY 9 Unmodified _TVVTQLLVY_ 0 0 0 ENST00000411929.5_1_2:118846089-118865895:+|nuORF;ENST00000467223.5_1_2:118846216-118865895:+|nuORF;ENSG00000125629|ENST00000245787|INSIG2;ENST00000471186.5_1_2:118846089-118865935:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF ENST00000411929.5_1_2:118846089-118865895:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.7710571289062 2 518.307875 1034.6012 1.3755 0.00071295 -0.47954 -0.00024855 0.89599 0.0004644 518.3075688420531 90.79 0.42732 84.615 84.427 84.854 -6.1757 38 25 2 0 0 0 0.1325 1 59900 59900 32.305 26.1 1 9860300 66509 3862 44285 45286 77635 77635 0.08528084279896575 TVVVEQVVVK 10 Unmodified _TVVVEQVVVK_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7721557617188 2 550.339707 1098.66486 -0.2427 -0.00013357 -0.64773 -0.00035647 -0.89044 -0.00049004 550.339399954909 41.11 0.25665 41.11 41.024 41.281 0 21 12 2 0 0 0 0.23634 1 22162 22162 3.5965 0.60125 1 2988800 + 66510 22259 44286 45287 77636 77636 0.1194744471699778 TVVVEQVVVK 10 Unmodified _TVVVEQVVVK_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 550.339707 1098.66486 -0.017547 -9.6565E-06 -1.8224 -0.0010029 -1.84 -0.0010126 550.3387848669961 41.361 0.14771 41.058 40.964 41.112 -0.30304 -0.026215 -0.00072379 NaN 3.5965 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2058400 + 66511 22259 44286 45287 0.1194744471699778 TVWAEWWCELQ 11 Unmodified _TVWAEWWCELQ_ 0 0 0 REV__ENSG00000100426|ENST00000216268|ZBED4 REV__ENSG00000100426|ENST00000216268|ZBED4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 725.82861328125 2 725.826637 1449.63872 NaN NaN NaN NaN NaN NaN NaN 58.452 1 58.452 57.952 58.952 0 0 0 0 0.94201 1 32544 32544 1.0715 0.10919 1 + 66512 18066 44287 45288 77637 77637 -0.06811192516806841 TVWEDQLSY 9 Unmodified _TVWEDQLSY_ 0 0 0 ENSG00000101624|ENST00000262127|CEP76;nc|ENSG00000101624|Q8TAP6-2|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF ENSG00000101624|ENST00000262127|CEP76 ENSG00000101624|ENST00000262127|CEP76 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7247924804688 2 570.764029 1139.5135 0.70189 0.00040062 -1.3792 -0.0007872 -0.67731 -0.00038659 570.7632275461917 60.066 0.21323 60.066 59.923 60.137 0 15 9 2 0 0 0 0.17718 1 33479 33479 14.838 5.4551 1 1211500 66513 1982 44288 45289 77638 77638 -0.050671613814984084 TVWEIPQL 8 Unmodified _TVWEIPQL_ 0 0 0 ENST00000358127.8_1_9:36839512-36839866:-|nuORF ENST00000358127.8_1_9:36839512-36839866:-|nuORF ENST00000358127.8_1_9:36839512-36839866:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7718505859375 2 493.271293 984.528032 -0.20882 -0.000103 3.5122 0.0017324 3.3033 0.0016294 493.2732141680518 71.022 0.20881 71.022 70.882 71.09 0 12 9 2 0 0 0 8.7369 1 39542 39542 9.3474 0 1 599120 66514 12123 44289 45290 77639 77639 0.03514955557295707 TVWLPFMLVAL 11 Unmodified _TVWLPFMLVAL_ 0 0 0 ENST00000372406.5_1_9:132898212-132898338:+|nuORF ENST00000372406.5_1_9:132898212-132898338:+|nuORF ENST00000372406.5_1_9:132898212-132898338:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3701171875 2 645.369952 1288.72535 0.2653 0.00017122 0.1525 9.8419E-05 0.4178 0.00026964 645.3700491988433 51.8 0.22195 51.742 51.592 51.814 -0.058918 15 10 2 0 0 0 0.68427 1 28025 28025 5.7319 0 1 1868200 66515 12379 44290 45291 77640 77640 0.09253838775725853 TVWSDWGP 8 Unmodified _TVWSDWGP_ 0 0 0 REV__ENST00000505710.1_2_4:17492283-17503442:-|nuORF REV__ENST00000505710.1_2_4:17492283-17503442:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 474.2152709960938 2 474.216517 946.418482 NaN NaN NaN NaN NaN NaN NaN 56.672 1 50.695 50.195 51.195 -5.9769 0 0 0 0.90769 1 36181 36181 18.135 1.1927 1 + 66516 28073 44291 45292 77641 77641 -0.05687050062056187 TVYDRTTVL 9 Unmodified _TVYDRTTVL_ 0 0 0 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2903442382812 2 534.290214 1066.56587 0.31489 0.00016824 -0.83868 -0.0004481 -0.52379 -0.00027985 534.2898682453374 47.138 0.37741 47.138 46.962 47.339 0 56 17 5 0 0 0 0.094149 2 25754 25754;25862 34.402 8.1336 1 47269000 66517 9698 44292 45293 77642;77643 77642 0.03525421752101465 TVYDRTTVL 9 Unmodified _TVYDRTTVL_ 0 0 0 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 ENSG00000188786|ENST00000373036|MTF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.29150390625 2 534.290214 1066.56587 1.1653 0.00062262 0.4258 0.0002275 1.5911 0.00085012 534.2904654450529 53.71 0.65197 47.905 47.711 48.363 -5.8042 92 39 3 0 0 0 0.094149 2 33883 33883;34015 34.402 8.1336 1 118200000 66518 9698 44292 45293 77644;77645 77644 0.03525421752101465 TVYLGRCCL 9 Unmodified _TVYLGRCCL_ 0 0 0 REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2653198242188 2 514.256805 1026.49906 -0.053086 -2.73E-05 0.66986 0.00034448 0.61678 0.00031718 514.2569783803357 76.566 0.60136 76.087 75.812 76.413 -0.47945 81 34 3 0 0 0 0.48152 1 42035 42035 8.5933 0 1 9681000 + 66519 25153 44293 45294 77646 77646 -0.013132283350159923 TVYMWDYGYK 10 Unmodified _TVYMWDYGYK_ 0 0 0 REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF REV__ENST00000361236.7_2_11:102267852-102267975:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 663.2955932617188 2 663.297181 1324.57981 NaN NaN NaN NaN NaN NaN NaN 33.697 1 33.697 33.197 34.197 0 0 0 0 0.88176 1 17695 17695 8.7454 0 1 + 66520 25918 44294 45295 77647 77647 -0.06949668811125775 TVYPVAIKY 9 Unmodified _TVYPVAIKY_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2657470703125 2 527.302593 1052.59063 0.25824 0.00013617 1.0955 0.00057764 1.3537 0.00071381 527.3032754296361 52.925 0.15414 52.473 52.381 52.535 -0.45173 11 7 2 0 0 0 0.19205 1 28613 28613 14.838 4.7643 1 1788600 66521 6601 44295 45296 77648 77648 0.06644101625465737 TVYQVRWL 8 Unmodified _TVYQVRWL_ 0 0 0 nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF nc|ENSG00000115307|Q9Y679-3|AUP1 nc|ENSG00000115307|Q9Y679-3|AUP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2802734375 2 532.798009 1063.58147 0.43472 0.00023162 1.1425 0.00060874 1.5773 0.00084036 532.7995824066952 85.95 0.19775 85.448 85.321 85.519 -0.50256 11 7 2 0 0 0 8.7369 1 46995 46995 5.7604 0 1 201300 66522 3109 44296 45297 77649 77649 0.05221753059799994 TVYSWRHF 8 Unmodified _TVYSWRHF_ 0 0 0 ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3 ENSG00000183625|ENST00000395940|CCR3 ENSG00000183625|ENST00000395940|CCR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7745361328125 2 548.272158 1094.52976 0.31038 0.00017017 1.1628 0.00063751 1.4731 0.00080768 548.2728126865678 96.118 0.34952 95.813 95.66 96.009 -0.30472 31 18 3 0 0 0 0.80624 1 52522 52522 2.8892 0 1 653980 66523 9170 44297 45298 77650 77650 -0.013719906341066235 TVYSYIQDHV 10 Unmodified _TVYSYIQDHV_ 0 0 0 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8668823242188 3 408.868027 1223.58225 NaN NaN NaN NaN NaN NaN NaN 28.77 1 28.708 28.208 29.208 -0.062159 0 0 0 0.99248 1 14861 14861 0.62683 0 1 66524 16370 44298 45299 77651 77651 -0.02059497081813788 TVYYSVEY 8 Unmodified _TVYYSVEY_ 0 0 0 ENSG00000174564|ENST00000329582|IL20RB;nc|ENSG00000174564|Q6UXL0-3|IL20RB;ENST00000469964.5_1_3:136699276-136714306:+|nuORF ENSG00000174564|ENST00000329582|IL20RB ENSG00000174564|ENST00000329582|IL20RB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2145385742188 2 512.237116 1022.45968 0.2616 0.000134 -0.082306 -4.216E-05 0.17929 9.184E-05 512.2371945492539 63.876 0.22146 63.876 63.801 64.022 0 11 8 2 0 0 0 8.7369 1 35649 35649 5.7604 0 1 450720 66525 8434 44299 45300 77652 77652 -0.05065333813229245 TWAALEGLSF 10 Unmodified _TWAALEGLSF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000574060.1_1_17:78269530-78272319:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7808837890625 2 547.779482 1093.54441 2.1328 0.0011683 1.4306 0.00078366 3.5635 0.001952 547.779628230694 95.247 0.3491 95.251 95.081 95.43 0.004158 27 12 3 0 0 0 0.11755 1 52914 52914 43.858 23.405 1 2216600 66526 8367 44300 45301 77653 77653 0.0013803672338781325 TWAYHRAY 8 Unmodified _TWAYHRAY_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7546997070312 2 534.256508 1066.49846 0.30087 0.00016074 -3.1738 -0.0016956 -2.8729 -0.0015349 534.255401797442 63.213 0.24195 63.213 63.053 63.295 0 13 9 2 0 0 0 0.80143 1 35252 35252 5.7604 0.52976 1 970190 + 66527 21625 44301 45302 77654 77654 -0.032125636681939795 TWAYHRAY 8 Unmodified _TWAYHRAY_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.256508 1066.49846 0.30087 0.00016074 -3.1738 -0.0016956 -2.8729 -0.0015349 534.255401797442 63.213 0.24195 63.213 63.053 63.295 0 0 0 NaN 5.7604 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 970190 + 66528 21625 44301 45302 -0.032125636681939795 TWDDAFATF 9 Unmodified _TWDDAFATF_ 0 0 0 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2318725585938 2 537.232364 1072.45018 NaN NaN NaN NaN NaN NaN NaN 81.944 1 81.944 81.444 82.444 0 0 0 0 0.23581 1 45472 45472 28.487 19.139 1 66529 7900 44302 45303 77655 77655 -0.08315102098777061 TWDDAFATF 9 Unmodified _TWDDAFATF_ 0 0 0 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 ENSG00000169683|ENST00000306688|LRRC45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2326049804688 2 537.232364 1072.45018 0.86777 0.00046619 0.48086 0.00025833 1.3486 0.00072452 537.232390930836 90.487 0.60983 84.311 83.951 84.56 -6.1757 55 35 2 0 0 0 0.026094 2 59792 59664;59792 57.471 42.89 1 17848000 66530 7900 44302 45303 77656;77657 77657 -0.08315102098777061 TWDPHHYRL 9 Unmodified _TWDPHHYRL_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8684997558594 3 408.868473 1223.58359 -0.41673 -0.00017039 -0.053395 -2.1832E-05 -0.47012 -0.00019222 408.8684626139921 35.724 0.18612 35.502 35.412 35.599 -0.2224 18 7 3 0 0 0 0.08691 1 18723 18723 33.445 8.4878 1 3665700 66531 357 44303 45304 77658 77658 -0.019258182023804693 TWDPHHYRL 9 Unmodified _TWDPHHYRL_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8681945800781 3 408.868473 1223.58359 -0.29529 -0.00012073 -0.039925 -1.6324E-05 -0.33521 -0.00013706 408.868595981257 35.45 0.16321 35.475 35.373 35.536 0.024967 15 7 3 0 0 0 0.34999 1 18746 18746 10.151 6.5635 1 1794100 66532 357 44303 45304 77659 77659 -0.019258182023804693 TWDPHHYRL 9 Unmodified _TWDPHHYRL_ 0 0 0 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 409.0360107421875 3 408.868473 1223.58359 0.99324 0.00040611 1.1737 0.00047989 2.1669 0.000886 408.8689974386541 39.09 0.25852 34.639 34.523 34.782 -4.4509 28 16 2 0 0 0 0.21144 1 23095 23095 7.1017 3.2254 1 18299000 66533 357 44303 45304 77660 77660 -0.019258182023804693 TWDSFLEKF 9 Unmodified _TWDSFLEKF_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;ENST00000562941.1_1_16:29473130-29474884:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7855834960938 2 586.784764 1171.55498 0.53725 0.00031525 -1.366 -0.00080155 -0.82876 -0.00048631 586.7840354983592 82.373 0.3373 81.878 81.742 82.079 -0.4952 21 13 2 0 0 0 0.43463 1 45122 45122 10.824 0.64053 1 516620 66534 9829;10450 44304 45305 77661 77661 -0.02393980622196068 TWDSFLEKF 9 Unmodified _TWDSFLEKF_ 0 0 0 ENSG00000196502|ENST00000314752|SULT1A1;nc|ENSG00000289755|P50225-2|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3;ENSG00000213648|ENST00000360423|SULT1A4;nc|ENSG00000261052|P0DMM9-3|SULT1A3;nc|ENSG00000261052|P0DMM9-2|SULT1A3;ENST00000569959.5_1_16:30212049-30214229:+|nuORF;ENST00000562257.5_1_16:30212387-30214357:+|nuORF;ENST00000562941.1_1_16:29473130-29474884:+|nuORF ENSG00000196502|ENST00000314752|SULT1A1;ENSG00000261052|ENST00000338971|SULT1A3 ENSG00000261052|ENST00000338971|SULT1A3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 586.784764 1171.55498 2.0651 0.0012118 -3.7955 -0.0022271 -1.7304 -0.0010154 586.7825895457879 81.853 0.22755 81.913 81.803 82.031 0.059929 0.017734 -0.0019318 NaN 10.824 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2065400 66535 9829;10450 44304 45305 -0.02393980622196068 TWFNQPARKI 10 Unmodified _TWFNQPARKI_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.900146484375 3 420.899773 1259.67749 0.35808 0.00015071 0.24171 0.00010173 0.59978 0.00025245 420.8998448753894 40.254 0.27384 40.259 40.108 40.382 0.0050583 31 12 3 0 0 0 0.04428 1 21442 21442 61.09 41.464 1 7328100 66536 7624 44305 45306 77662 77662 0.0580390089987759 TWFNQPARKI 10 Unmodified _TWFNQPARKI_ 0 0 0 ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000565571.5_1_16:89627367-89628201:+|nuORF;nc|ENSG00000167526|P26373-2|RPL13;ENSG00000167526|ENST00000311528|RPL13;ENST00000491523.5_1_16:89627367-89627472:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF ENST00000484610.5_1_16:89627367-89627911:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.900390625 3 420.899773 1259.67749 0.90935 0.00038275 -0.61446 -0.00025863 0.29489 0.00012412 420.8995809739982 44.64 0.41827 39.788 39.557 39.975 -4.852 62 33 2 0 0 0 0.087164 2 27180 27180;27303 49.527 30.806 1 23572000 66537 7624 44305 45306 77663;77664 77663 0.0580390089987759 TWFPKTPMLF 10 Oxidation (M) _TWFPKTPM(Oxidation (M))LF_ TWFPKTPM(1)LF TWFPKTPM(80)LF 0 0 1 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3296508789062 2 642.328285 1282.64202 1.2676 0.00081423 0.55254 0.00035491 1.8202 0.0011691 642.3281837486489 97.334 0.2329 91.158 91.028 91.261 -6.1757 26 12 3 0 0 0 0.015688 1 64515 64515 79.596 52.713 1 24489000 66538 8031 44306 45307 77665 77665 1367 0.012001023278571665 TWFPKTPMLF 10 Unmodified _TWFPKTPMLF_ 0 0 0 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 ENSG00000170852|ENST00000304056|KBTBD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8331298828125 2 634.330827 1266.6471 0.88611 0.00056209 1.135 0.00071995 2.0211 0.001282 634.8336839599004 99.4 0.10179 93.224 93.188 93.29 -6.1757 11 6 2 0 0 0 0.036856 1 66206 66206 74.2 36.024 1 22474000 66539 8031 44306 45308 77666 77666 0.024444061904659975 TWFQFHSYLQR 11 Unmodified _TWFQFHSYLQR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.9186401367188 3 504.917604 1511.73098 -0.24849 -0.00012547 1.8829 0.0009507 1.6344 0.00082523 504.91864510657865 24.988 0.18711 24.971 24.859 25.046 -0.017006 15 7 3 0 0 0 0.71938 1 12764 12764 2.4348 0 1 4237100 66540 659 44307 45309 77667 77667 -0.004413463882428914 TWFQFHSYLQR 11 Unmodified _TWFQFHSYLQR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.918212890625 3 504.917604 1511.73098 0.29197 0.00014742 0.86668 0.0004376 1.1587 0.00058503 504.91804532471457 24.591 0.33938 24.615 24.441 24.78 0.024427 47 13 5 0 0 0 0.71938 1 12740 12740 2.4348 1.1051 1 97831000 66541 659 44307 45309 77668 77668 -0.004413463882428914 TWFQFHSYLQR 11 Unmodified _TWFQFHSYLQR_ 0 0 0 nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 nc|ENSG00000042062|Q96MK2|RIPOR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.9187316894531 3 504.917604 1511.73098 0.40446 0.00020422 1.3144 0.00066365 1.7188 0.00086787 504.9182213076689 27.785 0.3786 24.748 24.559 24.938 -3.0365 61 19 4 0 0 0 0.72311 1 15356 15356 2.084 0.62885 1 38183000 66542 659 44307 45309 77669 77669 -0.004413463882428914 TWFTAGAKLLF 11 Unmodified _TWFTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2 nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8487548828125 2 627.847699 1253.68084 1.7424 0.001094 -0.63716 -0.00040004 1.1053 0.00069394 627.8471835990789 92.697 0.64468 92.727 92.494 93.139 0.030197 62 25 4 0 0 0 0.00063278 2 51626 51516;51626 87.258 69.112 1 23775000 66543 8006 44308 45310 77670;77671 77671 0.06415150953898774 TWFTAGAKLLF 11 Unmodified _TWFTAGAKLLF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2 nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3482666015625 2 627.847699 1253.68084 0.46577 0.00029243 0.039136 2.4572E-05 0.50491 0.00031701 627.847673573029 99.95 0.29628 93.774 93.588 93.884 -6.1757 72 21 4 0 0 0 8.6319E-10 2 66596 66596;66776 117.84 96.301 1 528700000 66544 8006 44308 45310 77672;77673 77672 0.06415150953898774 TWGDDEHGISS 11 Unmodified _TWGDDEHGISS_ 0 0 0 REV__ENSG00000198799|ENST00000361127|LRIG2 REV__ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7511596679688 2 602.249274 1202.484 0.62082 0.00037389 -1.0613 -0.00063916 -0.44048 -0.00026528 602.2483713097249 97.078 0.42944 90.902 90.708 91.137 -6.1757 83 24 4 0 0 0 0.56638 1 64251 64251 13.042 5.1323 1 73679000 + 66545 24063 44309 45311 77674 77674 -0.10914725397651637 TWGDDEHGISS 11 Unmodified _TWGDDEHGISS_ 0 0 0 REV__ENSG00000198799|ENST00000361127|LRIG2 REV__ENSG00000198799|ENST00000361127|LRIG2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 602.7511596679688 2 602.249274 1202.484 0.62082 0.00037389 -1.0613 -0.00063916 -0.44048 -0.00026528 602.2483713097249 97.078 0.42944 90.902 90.708 91.137 -6.1757 83 24 4 0 0 0 0.28953 1 64251 64251 13.042 8.2865 1 73679000 + 66546 24063 44309 45311 77675 77675 -0.10914725397651637 TWGDNSELSF 10 Unmodified _TWGDNSELSF_ 0 0 0 REV__ENSG00000176208|ENST00000321990|ATAD5 REV__ENSG00000176208|ENST00000321990|ATAD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2530517578125 2 578.251286 1154.48802 NaN NaN NaN NaN NaN NaN NaN 71.174 1 71.174 70.674 71.674 0 0 0 0 0.97302 1 39648 39648 3.5965 1.019 1 + 66547 22916 44310 45312 77676 77676 -0.08304635903959934 TWGDNSELSF 10 Unmodified _TWGDNSELSF_ 0 0 0 REV__ENSG00000176208|ENST00000321990|ATAD5 REV__ENSG00000176208|ENST00000321990|ATAD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2540893554688 2 578.251286 1154.48802 0.59884 0.00034628 1.5183 0.00087798 2.1172 0.0012243 578.2521055007169 71.803 0.40109 71.327 71.098 71.499 -0.47609 41 15 4 0 0 0 0.50362 2 39237 39237;39341 16.149 4.5088 1 4438600 + 66548 22916 44310 45312 77677;77678 77677 -0.08304635903959934 TWGHVSDQKDV 11 Unmodified _TWGHVSDQKDV_ 0 0 0 REV__ENSG00000165138|ENST00000353234|ANKS6 REV__ENSG00000165138|ENST00000353234|ANKS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3060302734375 2 636.304384 1270.59421 NaN NaN NaN NaN NaN NaN NaN 17.551 1 17.565 17.065 18.065 0.013865 0 0 0 0.94032 1 8735 8735 2.2828 0.63015 1 + 66549 21986 44311 45313 77679 77679 -0.030258803386232103 TWHPCLPKF 9 Carbamidomethyl (C) _TWHPC(Carbamidomethyl (C))LPKF_ TWHPC(1)LPKF TWHPC(40)LPKF 0 1 0 ENSG00000188313|ENST00000342435|PLSCR1;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8678588867188 3 395.867305 1184.58008 0.63852 0.00025277 -0.24338 -9.6347E-05 0.39514 0.00015642 395.8672892692573 82.371 0.69437 76.195 75.78 76.474 -6.1757 59 38 2 0 0 0 0.069655 1 53937 53937 40.239 28.744 1 10472000 66550 9647 44312 45314 77680 77680 885 -0.004822043006242893 TWIASFYNHSW 11 Unmodified _TWIASFYNHSW_ 0 0 0 ENSG00000158477|ENST00000289429|CD1A ENSG00000158477|ENST00000289429|CD1A ENSG00000158477|ENST00000289429|CD1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 706.326904296875 2 706.325119 1410.63569 -0.073908 -5.2203E-05 3.1813 0.002247 3.1074 0.0021948 706.3270730151422 64.72 0.17244 64.72 64.614 64.786 0 10 7 2 0 0 0 0.73115 1 36129 36129 1.3295 0.13619 1 740250 66551 6589 44313 45315 77681 77681 -0.05320699579283428 TWIFRRWYSF 10 Unmodified _TWIFRRWYSF_ 0 0 0 ENST00000554295.1_1_12:98849015-98849897:-|nuORF ENST00000554295.1_1_12:98849015-98849897:-|nuORF ENST00000554295.1_1_12:98849015-98849897:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 731.3713989257812 2 731.374946 1460.73534 NaN NaN NaN NaN NaN NaN NaN 57.856 1 57.366 56.866 57.866 -0.48974 0 0 0 0.9731 1 31447 31447 6.7232 3.4419 1 66552 15206 44314 45316 77682 77682 0.023401628253168383 TWILYPSETL 10 Unmodified _TWILYPSETL_ 0 0 0 ENST00000327247.9_1_1:155210492-155214452:-|nuORF ENST00000327247.9_1_1:155210492-155214452:-|nuORF ENST00000327247.9_1_1:155210492-155214452:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2195739746094 3 408.216657 1221.62814 -0.55035 -0.00022466 4.2336 0.0017282 3.6832 0.0015036 408.2179988627043 19.187 0.17257 19.187 19.094 19.266 0 14 10 2 0 0 0 0.69064 1 9583 9583 1.9064 0 1 493840 66553 11824 44315 45317 77683 77683 0.02619148100438906 TWLAARPRGAR 11 Unmodified _TWLAARPRGAR_ 0 0 0 REV__ENST00000421285.3_1_15:72957287-72958024:+|nuORF REV__ENST00000421285.3_1_15:72957287-72958024:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3663940429688 2 627.862538 1253.71052 0.19974 0.00012541 1.8806 0.0011808 2.0803 0.0013062 627.8627466801969 80.177 0.68262 80.235 80.05 80.733 0.057587 53 32 2 0 0 0 0.30985 1 44530 44530 26.268 1.2772 1 32610000 + 66554 26841 44316 45318 77684 77684 0.09381527742584694 TWLASHWL 8 Unmodified _TWLASHWL_ 0 0 0 REV__nc|ENSG00000108342|P09919-3|CSF3 REV__nc|ENSG00000108342|P09919-3|CSF3 MSMS AL20221201_MKP_PDAC_01 4 507.2890319824219 2 507.263802 1012.51305 NaN NaN NaN NaN NaN NaN NaN 26.683 1 23.731 23.231 24.231 -2.9511 0 0 0 0.93066 1 14729 14729 14.582 2.0501 1 + 66555 18597 44317 45319 77685 77685 0.007295084799466167 TWLKRPFSL 9 Unmodified _TWLKRPFSL_ 0 0 0 REV__ENSG00000283697|ENST00000431993|HSFX3 REV__ENSG00000283697|ENST00000431993|HSFX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2263793945312 3 383.225598 1146.65496 1.1702 0.00044844 0.69983 0.00026819 1.87 0.00071663 383.2258690161958 49.912 0.30371 49.863 49.743 50.046 -0.048824 25 14 2 0 0 0 0.53557 1 27023 27023 5.2969 0 1 2157600 + 66556 24692 44318 45320 77686 77686 0.0875030150227758 TWLLKEYSY 9 Unmodified _TWLLKEYSY_ 0 0 0 REV__ENSG00000173801|ENST00000393931|JUP REV__ENSG00000173801|ENST00000393931|JUP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.53955078125 3 401.541252 1201.60193 -0.23373 -9.3852E-05 -2.1343 -0.00085701 -2.368 -0.00095086 401.53964368873227 34.213 0.2543 34.021 33.82 34.074 -0.19131 23 9 3 0 0 0 0.58865 1 17879 17879 1.0715 0.29493 1 1439900 + 66557 22748 44319 45321 77687 77687 0.009188789289510169 TWLPNHVVF 9 Unmodified _TWLPNHVVF_ 0 0 0 ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF;ENST00000572019.1_1_17:5319973-5322970:-|nuORF ENSG00000108559|ENST00000573584|NUP88 ENSG00000108559|ENST00000573584|NUP88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.798583984375 2 556.798009 1111.58147 0.36321 0.00020224 -0.53409 -0.00029738 -0.17088 -9.5146E-05 556.7980930719092 72.344 0.16797 72.386 72.297 72.465 0.041733 16 7 3 0 0 0 0.23158 1 39847 39847 20.454 8.8133 1 2067100 66558 2582 44320 45322 77688 77688 0.03013753059804003 TWLVNSAAHLF 11 Unmodified _TWLVNSAAHLF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.33544921875 2 629.83258 1257.65061 0.14903 9.3863E-05 -1.1178 -0.00070403 -0.96878 -0.00061017 629.8309911373387 80.306 0.31421 80.364 80.293 80.607 0.057587 22 14 2 0 0 0 0.019459 1 44379 44379 57.722 27.881 1 13341000 66559 1685 44321 45323 77689 77689 0.03208792288683071 TWLVNSAAHLF 11 Unmodified _TWLVNSAAHLF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.3338623046875 2 629.83258 1257.65061 1.1584 0.00072961 -0.67265 -0.00042366 0.48577 0.00030596 629.8317924378164 97.735 0.65795 91.56 91.01 91.668 -6.1757 72 39 4 0 0 0 0.00078105 1 64775 64775 85.642 52.856 1 111960000 66560 1685 44321 45323 77690 77690 0.03208792288683071 TWMNNFHTL 9 Oxidation (M) _TWM(Oxidation (M))NNFHTL_ TWM(1)NNFHTL TWM(42)NNFHTL 0 0 1 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2659912109375 2 590.266216 1178.51788 1.3438 0.00079321 -1.014 -0.00059851 0.32985 0.0001947 590.2654466996569 50.28 0.24621 50.232 50.127 50.373 -0.048828 24 11 3 0 0 0 0.06294 1 27201 27201 41.84 23.693 1 2442000 66561 3762;16168 44322 45324 77691 77691 663 -0.0642397543961124 TWPGGGVR 8 Unmodified _TWPGGGVR_ 0 0 0 REV__ENST00000610023.1_1_19:18332093-18336480:-|nuORF REV__ENST00000610023.1_1_19:18332093-18336480:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2194213867188 2 415.219395 828.424236 0.20387 8.465E-05 1.0528 0.00043714 1.2567 0.00052179 415.2197409241993 54.97 0.27493 54.901 54.744 55.019 -0.068741 23 13 2 0 0 0 0.80676 1 29850 29850 2.5775 0 1 4964000 + 66562 29336 44323 45325 77692 77692 0.00316093240292048 TWREAEAL 8 Unmodified _TWREAEAL_ 0 0 0 ENST00000608721.1_1_6:161413012-161413321:-|nuORF ENST00000608721.1_1_6:161413012-161413321:-|nuORF ENST00000608721.1_1_6:161413012-161413321:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2464599609375 2 488.248349 974.482145 -0.58963 -0.00028789 0.57167 0.00027912 -0.017961 -8.7695E-06 488.2485263746189 27.998 0.55057 27.998 27.741 28.292 0 43 30 2 0 0 0 0.48669 3 14346 14346;14443;14548 36.044 0 1 4758700 66563 15874 44324 45326 77693;77694;77695 77693 -0.0061168962496367385 TWREPGAA 8 Unmodified _TWREPGAA_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2229309082031 2 444.222134 886.429715 0.78218 0.00034746 1.3425 0.00059635 2.1246 0.00094381 444.22251748368876 58.985 0.16244 58.924 58.801 58.964 -0.060722 10 7 2 0 0 0 0.80722 1 32144 32144 2.3027 0 1 1285500 66564 16467 44325 45327 77696 77696 -0.018042279679093554 TWRNPWRRSYH 11 Unmodified _TWRNPWRRSYH_ 0 0 0 ENSG00000177706|ENST00000313766|FAM20C;nc|ENSG00000177706|Q8IXL6-2|FAM20C;ENST00000515795.1_7:286228-299943:+|nuORF ENSG00000177706|ENST00000313766|FAM20C ENSG00000177706|ENST00000313766|FAM20C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 779.8944091796875 2 779.892358 1557.77016 0.20508 0.00015994 2.6028 0.0020299 2.8078 0.0021898 780.3959123913 83.544 0.33649 83.046 82.814 83.15 -0.49751 31 13 3 0 0 0 0.74244 1 45676 45676 0.26902 0.26902 1 1303400 66565 8703 44326 45328 77697 77697 0.013587986859874945 TWRRRYLRRKE 11 Unmodified _TWRRRYLRRKE_ 0 0 0 ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4735107421875 2 810.471306 1618.92806 NaN NaN NaN NaN NaN NaN NaN 51.501 1 51.501 51.001 52.001 0 0 0 0 0.9435 1 28445 28445 0 0 1 66566 10958 44327 45329 77698 77698 0.14335297945194725 TWRRRYLRRKE 11 Unmodified _TWRRRYLRRKE_ 0 0 0 ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4738159179688 2 810.471306 1618.92806 NaN NaN NaN NaN NaN NaN NaN 52.095 1 52.095 51.595 52.595 0 0 0 0 0.9435 1 28816 28816 0 0 1 66567 10958 44327 45329 77699 77699 0.14335297945194725 TWRRRYLRRKE 11 Unmodified _TWRRRYLRRKE_ 0 0 0 ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown ENSG00000284188|ENST00000640271|unknown MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 810.472900390625 2 810.471306 1618.92806 NaN NaN NaN NaN NaN NaN NaN 61.49 1 61.001 60.501 61.501 -0.48932 0 0 0 0.9435 1 33492 33492 0 0 1 66568 10958 44327 45329 77700 77700 0.14335297945194725 TWRTWTSFF 9 Unmodified _TWRTWTSFF_ 0 0 0 ENST00000566181.2_1_16:731229-732210:+|nuORF ENST00000566181.2_1_16:731229-732210:+|nuORF ENST00000566181.2_1_16:731229-732210:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2021789550781 3 411.201341 1230.58219 -0.29948 -0.00012315 0.92717 0.00038125 0.62769 0.00025811 411.201808974247 54.056 0.19877 53.989 53.882 54.081 -0.066936 17 9 2 0 0 0 0.54444 1 29379 29379 2.7352 0 1 1456800 66569 15416 44328 45330 77701 77701 -0.023874522911683016 TWRWQYQF 8 Unmodified _TWRWQYQF_ 0 0 0 ENST00000374866.7_1_2:189968999-189975048:-|nuORF ENST00000374866.7_1_2:189968999-189975048:-|nuORF ENST00000374866.7_1_2:189968999-189975048:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.792236328125 2 607.790715 1213.56688 NaN NaN NaN NaN NaN NaN NaN 88.803 1 88.803 88.303 89.303 0 0 0 0 0.97444 1 49146 49146 0.79363 0 1 66570 12461 44329 45331 77702 77702 -0.03136319088343953 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.599609375 3 573.600275 1717.779 NaN NaN NaN NaN NaN NaN NaN 4.3757 1 4.3694 3.8694 4.8694 -0.0062971 0 0 0 0.9435 1 2215 2215 0 0 1 + 66571 25293 44330 45332 77703 77703 -0.05118272468212126 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.6004638671875 3 573.600275 1717.779 NaN NaN NaN NaN NaN NaN NaN 4.9411 1 4.9422 4.4422 5.4422 0.0010915 0 0 0 0.9435 1 2493 2493 0 0 1 + 66572 25293 44330 45332 77704 77704 -0.05118272468212126 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.6002197265625 3 573.600275 1717.779 NaN NaN NaN NaN NaN NaN NaN 5.2875 1 5.2886 4.7886 5.7886 0.0010915 0 0 0 0.9435 1 2663 2663 0 0 1 + 66573 25293 44330 45332 77705 77705 -0.05118272468212126 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.599365234375 3 573.600275 1717.779 NaN NaN NaN NaN NaN NaN NaN 5.655 1 5.6561 5.1561 6.1561 0.0010915 0 0 0 0.9435 1 2846 2846 0 0 1 + 66574 25293 44330 45332 77706 77706 -0.05118272468212126 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2674560546875 3 573.600275 1717.779 NaN NaN NaN NaN NaN NaN NaN 6.1943 1 6.2033 5.7033 6.7033 0.0089307 0 0 0 0.9435 1 3110 3110 0 0 1 + 66575 25293 44330 45332 77707 77707 -0.05118272468212126 TWSWYEWYRWR 11 Unmodified _TWSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 859.89453125 2 859.896774 1717.779 NaN NaN NaN NaN NaN NaN NaN 60.269 1 54.155 53.655 54.655 -6.1147 0 0 0 0.9435 1 38773 38773 0 0 1 + 66576 25293 44330 45332 77708 77708 -0.05118272468212126 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2642822265625 2 567.261122 1132.50769 -0.092527 -5.2487E-05 0.613 0.00034773 0.52047 0.00029524 567.2616714262301 71.246 0.37915 71.246 71.041 71.421 0 47 18 3 0 0 0 0.010877 2 39642 39642;39739 77.984 57.531 1 4647300 66577 3235 44331 45333 77709;77710 77709 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2618408203125 2 567.261122 1132.50769 0.70462 0.0003997 0.61334 0.00034792 1.318 0.00074762 567.2614075257296 71.798 0.70499 71.322 71.047 71.752 -0.47609 102 28 5 0 0 0 0.010877 3 39218 39218;39323;39430 77.984 57.531 1 52162000 66578 3235 44331 45333 77711;77712;77713 77711 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2627563476562 2 567.261122 1132.50769 0.78145 0.00044329 1.7846 0.0010124 2.5661 0.0014557 567.2623565258684 72.537 0.4997 72.061 71.73 72.23 -0.47609 38 23 2 0 0 0 0.49272 1 39565 39565 7.9102 2.1497 1 1713200 66579 3235 44331 45333 77714 77714 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.263671875 2 567.261122 1132.50769 1.2722 0.00072165 2.0039 0.0011367 3.276 0.0018584 567.262195365817 71.228 0.42201 71.267 71.068 71.49 0.039024 31 18 2 0 0 0 0.026094 2 39189 39189;39288 57.471 34.323 1 6528600 66580 3235 44331 45333 77715;77716 77715 -0.05326259893195129 TWTEVSYTF 9 Unmodified _TWTEVSYTF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2620239257812 2 567.261122 1132.50769 1.572 0.00089173 -0.29261 -0.00016599 1.2794 0.00072574 567.2608285607987 79.465 1.1643 73.289 72.531 73.696 -6.1757 166 67 4 0 0 0 0.010877 3 52139 52005;52139;52275 77.984 56.238 1 505980000 66581 3235 44331 45333 77717;77718;77719 77718 -0.05326259893195129 TWTLTLVYFF 10 Unmodified _TWTLTLVYFF_ 0 0 0 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 ENSG00000178301|ENST00000313578|AQP11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.8388671875 2 645.842082 1289.66961 NaN NaN NaN NaN NaN NaN NaN 83.094 1 82.596 82.096 83.096 -0.49751 0 0 0 0.96981 1 45488 45488 3.9444 0.94915 1 66582 8744 44332 45334 77720 77720 0.03636328859738569 TWTLWVEEESY 11 Unmodified _TWTLWVEEESY_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.8245239257812 2 721.827357 1441.64016 NaN NaN NaN NaN NaN NaN NaN 42.808 1 42.808 42.308 43.308 0 0 0 0 0.93613 1 23200 23200 5.2969 0.76802 1 + 66583 17961 44333 45335 77721 77721 -0.0629927994702939 TWTLWVEEESY 11 Unmodified _TWTLWVEEESY_ 0 0 0 REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000096433|ENST00000605930|ITPR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.8245239257812 2 721.827357 1441.64016 0.77083 0.00055641 -2.993 -0.0021605 -2.2222 -0.0016041 722.3266942453355 42.717 0.24827 42.717 42.586 42.834 0 20 12 3 0 0 0 0.30217 1 23200 23200 5.2969 0.76802 1 1519100 + 66584 17961 44333 45335 77722 77722 -0.0629927994702939 TWWWRCWSWRQ 11 Unmodified _TWWWRCWSWRQ_ 0 0 0 REV__ENST00000348956.6_1_14:103986274-103986647:-|nuORF REV__ENST00000348956.6_1_14:103986274-103986647:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 840.8848266601562 2 840.885687 1679.75682 NaN NaN NaN NaN NaN NaN NaN 62.306 1 61.818 61.318 62.318 -0.48764 0 0 0 0.9435 1 33944 33944 0 0 1 + 66585 25772 44334 45336 77723 77723 -0.055867754176233575 TWWWRWPRCLR 11 Unmodified _TWWWRWPRCLR_ 0 0 0 ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.4197998046875 2 823.419697 1644.82484 NaN NaN NaN NaN NaN NaN NaN 90.142 1 90.142 89.642 90.642 0 0 0 0 0.9435 1 49873 49873 0 0 1 66586 11975 44335 45337 77724 77724 0.028220942330563048 TWWWRWPRCLR 11 Unmodified _TWWWRWPRCLR_ 0 0 0 ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 823.4209594726562 2 823.419697 1644.82484 NaN NaN NaN NaN NaN NaN NaN 62.654 1 56.478 55.978 56.978 -6.1757 0 0 0 0.94337 1 40439 40439 0 0 1 66587 11975 44335 45337 77725 77725 0.028220942330563048 TWYPVSIPAF 10 Unmodified _TWYPVSIPAF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8073120117188 2 590.8055 1179.59645 4.1141 0.0024307 -0.22916 -0.00013539 3.885 0.0022953 590.8054299761721 98.869 0.30992 98.84 98.693 99.003 -0.028282 30 10 4 0 0 0 0.063761 1 54901 54901 54.774 38.926 1 12919000 66588 7384 44336 45338 77726 77726 0.01383200137138374 TWYPVSIPAF 10 Unmodified _TWYPVSIPAF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.8062744140625 2 590.8055 1179.59645 0.39421 0.0002329 -0.12512 -7.3921E-05 0.2691 0.00015898 590.8055870273807 100.61 0.19138 94.432 94.312 94.503 -6.1757 44 12 5 0 0 0 0.1028 1 67303 67303 46.021 28.908 1 252210000 66589 7384 44336 45338 77727 77727 0.01383200137138374 TWYTMVVASLM 11 Unmodified _TWYTMVVASLM_ 0 0 0 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3 MSMS AL20221201_MKP_PDAC_01 4 651.318359375 2 651.31706 1300.61957 NaN NaN NaN NaN NaN NaN NaN 77.976 1 71.8 71.3 72.3 -6.1757 0 0 0 0.30911 1 51019 51019 32.786 5.5625 1 + 66590 23818 44337 45339 77728 77728 -0.018718651320568824 TYAAFINLL 9 Unmodified _TYAAFINLL_ 0 0 0 nc|ENSG00000111405|P21128-3|ENDOU;nc|ENSG00000111405|P21128-2|ENDOU;ENSG00000111405|ENST00000422538|ENDOU nc|ENSG00000111405|P21128-3|ENDOU nc|ENSG00000111405|P21128-3|ENDOU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2864379882812 2 513.286943 1024.55933 0.49263 0.00025286 -0.61431 -0.00031532 -0.12168 -6.2458E-05 513.2864549333391 56.612 0.1403 56.544 56.458 56.598 -0.068741 10 6 2 0 0 0 0.2143 1 30825 30825 21.747 1.3321 1 2250900 66591 2787 44338 45340 77729 77729 0.04803528591378381 TYAAFINLL 9 Unmodified _TYAAFINLL_ 0 0 0 nc|ENSG00000111405|P21128-3|ENDOU;nc|ENSG00000111405|P21128-2|ENDOU;ENSG00000111405|ENST00000422538|ENDOU nc|ENSG00000111405|P21128-3|ENDOU nc|ENSG00000111405|P21128-3|ENDOU MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.286943 1024.55933 -0.01823 -9.3573E-06 1.4459 0.00074217 1.4277 0.00073281 513.287197654091 56.944 0.31716 56.459 56.309 56.626 -0.48554 -0.04241 0.0014111 NaN 21.747 24 14 3 NaN NaN NaN NaN 0 NaN NaN 0 3646900 66592 2787 44338 45340 0.04803528591378381 TYAAFVQTHR 10 Unmodified _TYAAFVQTHR_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33037343-33041347:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3065185546875 2 597.306729 1192.59891 -0.066621 -3.9793E-05 -0.46964 -0.00028052 -0.53626 -0.00032031 597.3064497761225 46.504 0.74783 41.423 41.082 41.83 -5.0805 332 108 4 0 0 0 0.56348 1 28820 28820 13.042 2.2185 1 742500000 66593 10618 44339 45341 77730 77730 0.01031048594791173 TYAALNSKATF 11 Unmodified _TYAALNSKATF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.80810546875 2 593.808771 1185.60299 0.31998 0.00019001 0.076349 4.5336E-05 0.39633 0.00023535 593.808550591607 48.159 0.13881 42.925 42.834 42.973 -5.2339 13 7 2 0 0 0 0.0025724 1 29955 29955 79.427 58.973 1 9024300 66594 5256 44340 45342 77731 77731 0.017610932978413985 TYACFVSNL 9 Carbamidomethyl (C) _TYAC(Carbamidomethyl (C))FVSNL_ TYAC(1)FVSNL TYAC(52)FVSNL 0 1 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7506713867188 2 537.749867 1073.48518 0.16593 8.923E-05 0.8508 0.00045752 1.0167 0.00054675 537.7503259634613 66.848 0.39781 66.365 66.171 66.569 -0.48323 56 18 4 0 0 0 0.03568 1 36550 36550 52.268 23.187 1 23706000 66595 2314 44341 45343 77732 77732 226 -0.04862182562465023 TYACFVSNL 9 Carbamidomethyl (C) _TYAC(Carbamidomethyl (C))FVSNL_ TYAC(1)FVSNL TYAC(48)FVSNL 0 1 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7503051757812 2 537.749867 1073.48518 0.73403 0.00039473 0.21773 0.00011708 0.95177 0.00051181 537.749950770219 72.919 0.66821 66.743 66.43 67.098 -6.1757 98 33 4 0 0 0 0.042911 2 47699 47699;47813 48.346 22.947 1 181550000 66596 2314 44341 45343 77733;77734 77733 226 -0.04862182562465023 TYACFVSNL 9 Carbamidomethyl (C) _TYAC(Carbamidomethyl (C))FVSNL_ 0 1 0 nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.749867 1073.48518 1.0441 0.00056146 1.3318 0.00071616 2.3759 0.0012776 537.7502724623245 66.378 0.25961 66.387 66.26 66.519 0.0095596 -0.057495 0.00079498 NaN 52.268 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2659600 66597 2314 44341 45343 226 -0.04862182562465023 TYACPVCREE 10 Unmodified _TYACPVCREE_ 0 0 0 ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142 ENST00000433921.5_1_2:219503064-219516433:-|nuORF ENST00000433921.5_1_2:219503064-219516433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.7481079101562 2 585.749541 1169.48453 0.19157 0.00011221 -2.4922 -0.0014598 -2.3007 -0.0013476 585.7481436127224 30.408 0.34871 30.438 30.3 30.649 0.030106 24 15 2 0 0 0 0.64628 1 15900 15900 8.7454 2.0222 1 828400 66598 3139 44342 45344 77735 77735 -0.09343345273805426 TYADTLNHL 9 Unmodified _TYADTLNHL_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2587890625 2 524.258914 1046.50327 0.24455 0.00012821 -0.25419 -0.00013326 -0.0096418 -5.0548E-06 524.2587923365654 44.257 0.24389 44.257 44.131 44.375 0 20 12 3 0 0 0 0.0085164 1 24072 24072 99.799 28.665 1 17973000 66599 6146 44343 45345 77736 77736 -0.018117243160986618 TYADTLNHL 9 Unmodified _TYADTLNHL_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2600708007812 2 524.258914 1046.50327 1.1574 0.00060678 0.82955 0.0004349 1.987 0.0010417 524.2590819579431 50.496 0.40507 44.957 44.663 45.068 -5.5391 52 25 3 0 0 0 0.0071894 1 31559 31559 111.29 40.153 1 25896000 66600 6146 44343 45345 77737 77737 -0.018117243160986618 TYAEKLHRL 9 Unmodified _TYAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5484924316406 3 377.548741 1129.62439 -0.11765 -4.4417E-05 -0.24541 -9.2656E-05 -0.36306 -0.00013707 377.54864638344566 22.488 0.29043 22.511 22.378 22.669 0.022896 35 12 4 0 0 0 0.08907 2 11414 11414;11509 35.612 15.986 1 12144000 66601 6155;16276;16275;14741 44344 45346 77738;77739 77738 0.06476523117225952 TYAEKLHRL 9 Unmodified _TYAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5492248535156 3 377.548741 1129.62439 0.1374 5.1875E-05 -0.5914 -0.00022328 -0.454 -0.00017141 377.54860196819027 22.365 0.19228 22.383 22.282 22.474 0.01749 13 8 2 0 0 0 0.13639 1 11478 11478 29.437 16.565 1 3246100 66602 6155;16276;16275;14741 44344 45346 77740 77740 0.06476523117225952 TYAEKLHRL 9 Unmodified _TYAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5499572753906 3 377.548741 1129.62439 0.47489 0.00017929 0.45526 0.00017188 0.93014 0.00035117 377.5488599691668 25.236 0.46974 22.353 22.192 22.662 -2.8831 151 35 6 0 0 0 0.026499 3 13739 13739;13856;13970 57.249 36.668 1 250970000 66603 6155;16276;16275;14741 44344 45346 77741;77742;77743 77741 0.06476523117225952 TYAEKLHRL 9 Unmodified _TYAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3209228515625 2 565.819473 1129.62439 0.13429 7.5983E-05 2.435 0.0013778 2.5693 0.0014538 566.3226924389504 25.21 0.37581 22.327 22.249 22.625 -2.8831 56 25 4 0 0 0 0.070983 1 13893 13893 49.527 24.536 1 14908000 66604 6155;16276;16275;14741 44344 45346 77744 77744 0.06476523117225952 TYAELMQTL 9 Unmodified _TYAELMQTL_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2667846679688 2 535.26535 1068.51615 -0.032176 -1.7223E-05 -0.28319 -0.00015158 -0.31537 -0.00016881 535.2648913786359 71.513 0.26122 71.513 71.384 71.645 0 24 11 3 0 0 0 0.16226 1 39831 39831 26.884 14.352 1 1005400 66605 1551 44345 45347 77745 77745 -0.015370292482202785 TYAELMQTL 9 Unmodified _TYAELMQTL_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2645874023438 2 535.26535 1068.51615 1.3025 0.00069719 -1.2948 -0.00069307 0.0077069 4.1252E-06 535.2645485057992 79.529 0.46413 73.353 73.148 73.612 -6.1757 64 27 3 0 0 0 0.026094 2 52069 52069;52226 57.471 34.323 1 32213000 66606 1551 44345 45347 77746;77747 77746 -0.015370292482202785 TYAELMQTL 9 Unmodified _TYAELMQTL_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.26535 1068.51615 0.50269 0.00026907 -1.9861 -0.0010631 -1.4834 -0.00079402 535.2633082472264 72.02 0.32027 71.544 71.389 71.709 -0.47609 0.015443 -0.0015237 NaN 26.884 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 835400 66607 1551 44345 45347 -0.015370292482202785 TYAELMQTLRF 11 Unmodified _TYAELMQTLRF_ 0 0 0 ENST00000496641.1_1_7:140710217-140710433:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33 ENST00000496641.1_1_7:140710217-140710433:-|nuORF ENST00000496641.1_1_7:140710217-140710433:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.8502197265625 2 686.850113 1371.68567 1.2877 0.00088449 -0.12051 -8.2769E-05 1.1672 0.00080172 686.8499843466487 97.1 0.29245 90.924 90.769 91.062 -6.1757 35 16 3 0 0 0 4.9562E-22 2 64298 64298;64422 154.75 133.22 1 42594000 66608 1551 44346 45348 77748;77749 77748 0.014696670343255391 TYAKCQNAL 9 Carbamidomethyl (C) _TYAKC(Carbamidomethyl (C))QNAL_ TYAKC(1)QNAL TYAKC(59)QNAL 0 1 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7613525390625 2 534.760766 1067.50698 0.074956 4.0083E-05 0.62428 0.00033384 0.69924 0.00037392 534.761223681306 23.22 0.22328 20.442 20.388 20.611 -2.7784 33 22 2 0 0 0 0.024882 1 12547 12547 58.679 40.532 1 6892400 66609 10085 44347 45349 77750 77750 913 -0.024073778138927082 TYAKQYEEF 9 Unmodified _TYAKQYEEF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7722778320312 2 589.771854 1177.52915 -0.52804 -0.00031143 0.5205 0.00030697 -0.0075479 -4.4516E-06 589.7720895104061 34.973 0.30145 34.973 34.827 35.129 0 40 15 3 0 0 0 0.0093064 1 18421 18421 83.429 33.496 1 41598000 66610 2860 44348 45350 77751 77751 -0.05250874864486832 TYAKQYEEF 9 Unmodified _TYAKQYEEF_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7741088867188 2 589.771854 1177.52915 0.76978 0.00045399 0.98583 0.00058141 1.7556 0.0010354 589.7723523935889 39.397 0.37304 34.946 34.734 35.107 -4.4509 73 22 4 0 0 0 0.012668 2 23284 23284;23411 72.968 42.331 1 37259000 66611 2860 44348 45350 77752;77753 77752 -0.05250874864486832 TYAMMLTDI 9 Unmodified _TYAMMLTDI_ 0 0 0 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2274780273438 2 529.748479 1057.4824 -0.17983 -9.5265E-05 1.3583 0.00071953 1.1784 0.00062427 529.7496080324435 25.928 0.1865 25.928 25.84 26.026 0 13 8 2 0 0 0 0.20727 1 13353 13353 7.9102 1.5561 1 1123800 + 66612 19139 44349 45351 77754 77754 -0.044037740116209534 TYANPQGCHR 10 Unmodified _TYANPQGCHR_ 0 0 0 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 ENSG00000196878|ENST00000356082|LAMB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8419799804688 3 382.841818 1145.50363 0.21276 8.1452E-05 -0.23111 -8.848E-05 -0.018355 -7.0272E-06 382.8417123960809 37.06 0.30365 37.06 36.897 37.201 0 34 14 3 0 0 0 0.67033 1 19667 19667 3.3196 0 1 4895000 66613 9879 44350 45352 77755 77755 -0.0633062786789651 TYAPAIHQI 9 Unmodified _TYAPAIHQI_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2581176757812 2 507.274367 1012.53418 0.50743 0.00025741 2.0746 0.0010524 2.582 0.0013098 507.2761391578113 46.14 0.22262 41.185 41.018 41.241 -4.9549 24 14 2 0 0 0 0.08691 1 28321 28321 36.127 14.38 1 9578400 66614 9728 44351 45353 77756 77756 0.028414737887942465 TYAPLAFRYF 10 Unmodified _TYAPLAFRYF_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.8242797851562 2 624.824224 1247.63389 1.0667 0.00066652 0.046419 2.9004E-05 1.1131 0.00069552 624.8242889251353 95.945 0.45702 89.769 89.584 90.041 -6.1757 57 27 3 0 0 0 0.10424 1 63743 63743 45.7 26.443 1 44890000 66615 2483 44352 45354 77757 77757 0.01998291402742325 TYAPLFSLPSF 11 Unmodified _TYAPLFSLPSF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1 ENSG00000157106|ENST00000446231|SMG1 ENSG00000157106|ENST00000446231|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8251953125 2 621.823889 1241.63323 0.69883 0.00043455 0.92522 0.00057533 1.6241 0.0010099 621.8242727162128 101.37 0.12705 95.191 95.125 95.252 -6.1757 15 6 3 0 0 0 0.073964 1 68009 68009 45.7 22.963 1 54278000 66616 6500 44353 45355 77758 77758 0.022074519630450595 TYAQLESLI 9 Unmodified _TYAQLESLI_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.280029296875 2 519.279315 1036.54408 0.3493 0.00018138 0.40026 0.00020785 0.74956 0.00038923 519.2794441296236 78.838 0.29021 78.838 78.66 78.951 0 33 13 3 0 0 0 0.23158 1 43815 43815 20.454 7.9221 1 2237300 66617 10417 44354 45356 77759 77759 0.027266170035318282 TYAQLESLI 9 Unmodified _TYAQLESLI_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2802734375 2 519.279315 1036.54408 1.2987 0.00067438 -0.05037 -2.6156E-05 1.2483 0.00064822 519.2794850746214 86.626 0.50342 80.45 80.177 80.681 -6.1757 38 26 2 0 0 0 0.011968 1 57148 57148 74.929 34.972 1 11950000 66618 10417 44354 45356 77760 77760 0.027266170035318282 TYAQLESLI 9 Unmodified _TYAQLESLI_ 0 0 0 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 ENSG00000213024|ENST00000352066|NUP62 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.279315 1036.54408 0.66006 0.00034276 -0.088486 -4.5949E-05 0.57158 0.00029681 519.2790647326876 79.358 0.30676 78.868 78.682 78.989 -0.48933 0.015289 -0.00036029 NaN 20.454 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1460700 66619 10417 44354 45356 0.027266170035318282 TYAQRTQLF 9 Unmodified _TYAQRTQLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2954711914062 2 564.29583 1126.57711 0.29787 0.00016809 0.31727 0.00017904 0.61514 0.00034712 564.2959476750301 42.868 0.34311 42.558 42.335 42.678 -0.31039 32 14 3 0 0 0 0.011291 1 22751 22751 76.825 40.319 1 17782000 66620 4072;13819 44355 45357 77761 77761 0.018882438462242135 TYAQRTQLF 9 Unmodified _TYAQRTQLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5137939453125 3 376.532979 1126.57711 -0.27531 -0.00010366 -0.12496 -4.7051E-05 -0.40027 -0.00015071 376.53293211119575 34.654 0.27486 34.463 34.331 34.606 -0.19131 26 12 3 0 0 0 0.20207 1 18085 18085 11.495 3.3392 1 9126300 66621 4072;13819 44355 45357 77762 77762 0.018882438462242135 TYAQRTQLF 9 Unmodified _TYAQRTQLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.296875 2 564.29583 1126.57711 0.74784 0.000422 -0.26958 -0.00015212 0.47825 0.00026988 564.2956569591448 42.523 0.17834 42.514 42.421 42.599 -0.0088196 11 7 2 0 0 0 0.040733 1 22787 22787 49.527 31.381 1 2814700 66622 4072;13819 44355 45357 77763 77763 0.018882438462242135 TYAQRTQLF 9 Unmodified _TYAQRTQLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2965087890625 2 564.29583 1126.57711 1.221 0.000689 -0.47474 -0.00026789 0.74626 0.00042111 564.295604562237 47.298 0.41515 42.217 42.033 42.448 -5.0805 49 27 2 0 0 0 0.013118 1 29358 29358 71.708 37.306 1 70646000 66623 4072;13819 44355 45357 77764 77764 0.018882438462242135 TYAQRTQLF 9 Unmodified _TYAQRTQLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;nc|ENSG00000128585|Q9UL63-2|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1;ENST00000468830.1_1_7:131163282-131172484:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 MSMS AL20221201_MKP_PDAC_01 4 564.2922973632812 2 564.29583 1126.57711 NaN NaN NaN NaN NaN NaN NaN 47.141 1 42.061 41.561 42.561 -5.0805 0 0 0 0.076188 1 29228 29228 49.527 24.128 1 66624 4072;13819 44355 45357 77765 77765 0.018882438462242135 TYARHNKYF 9 Unmodified _TYARHNKYF_ 0 0 0 REV__ENSG00000149548|ENST00000344762|CCDC15 REV__ENSG00000149548|ENST00000344762|CCDC15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5374755859375 3 400.536724 1198.58834 0.76757 0.00030744 1.4018 0.00056149 2.1694 0.00086893 400.53725641665363 75.444 0.30531 74.967 74.821 75.126 -0.47714 28 17 2 0 0 0 0.49272 1 41351 41351 8.1555 0.54658 1 2643100 + 66625 21005 44356 45358 77766 77766 -0.0030093405964635167 TYARLAQLL 9 Unmodified _TYARLAQLL_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8126220703125 2 524.811116 1047.60768 0.5652 0.00029662 0.18987 9.9646E-05 0.75507 0.00039627 524.811321509813 64.349 0.19228 63.864 63.779 63.971 -0.48513 14 8 2 0 0 0 0.29507 1 35137 35137 24.021 10.513 1 861270 66626 8176 44357 45359 77767 77767 0.08578022231267823 TYARLAQLL 9 Unmodified _TYARLAQLL_ 0 0 0 nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19 nc|ENSG00000172046|O94966-4|USP19 nc|ENSG00000172046|O94966-4|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.811279296875 2 524.811116 1047.60768 0.94749 0.00049725 0.067143 3.5237E-05 1.0146 0.00053249 524.81106102968 63.948 0.2736 63.938 63.783 64.056 -0.010532 35 13 3 0 0 0 0.011739 1 34949 34949 82.529 38.757 1 9167800 66627 8176 44357 45359 77768 77768 0.08578022231267823 TYARNLPAF 9 Unmodified _TYARNLPAF_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7804565429688 2 526.779816 1051.54508 0.2989 0.00015746 0.86736 0.00045691 1.1663 0.00061437 526.7801382043252 49.054 0.32083 48.683 48.519 48.84 -0.37172 37 15 3 0 0 0 0.078314 2 26297 26297;26409 38.176 18.919 1 13128000 66628 4160 44358 45360 77769;77770 77769 0.021368761630810695 TYARNLPAF 9 Unmodified _TYARNLPAF_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.7796020507812 2 526.779816 1051.54508 0.24967 0.00013152 -0.28722 -0.0001513 -0.03755 -1.978E-05 526.7795185901555 48.737 0.29528 48.693 48.495 48.791 -0.04369 30 14 3 0 0 0 0.11784 1 26258 26258 31.268 15.119 1 3299600 66629 4160 44358 45360 77771 77771 0.021368761630810695 TYARNLPAF 9 Unmodified _TYARNLPAF_ 0 0 0 ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2 ENST00000519356.1_1_8:33331766-33367302:-|nuORF ENST00000519356.1_1_8:33331766-33367302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7804565429688 2 526.779816 1051.54508 1.2708 0.00066941 -0.19553 -0.000103 1.0752 0.00056642 526.7795033913098 53.924 0.44833 48.059 47.872 48.32 -5.8653 68 26 4 0 0 0 0.011671 1 34180 34180 75.761 41.359 1 62729000 66630 4160 44358 45360 77772 77772 0.021368761630810695 TYAYLFKYI 9 Unmodified _TYAYLFKYI_ 0 0 0 ENSG00000129472|ENST00000397762|RAB2B;ENST00000485996.1_1_14:21944657-21945031:-|nuORF;ENST00000475857.1_1_14:21942908-21945031:-|nuORF ENSG00000129472|ENST00000397762|RAB2B ENSG00000129472|ENST00000397762|RAB2B MSMS AL20221201_MKP_PDAC_01 4 591.3135986328125 2 591.3157 1180.61685 NaN NaN NaN NaN NaN NaN NaN 97.593 1 91.418 90.918 91.918 -6.1757 0 0 0 0.13463 1 64675 64675 49.933 21.446 1 66631 4138 44359 45361 77773 77773 0.033763707969455936 TYCAARNSYL 10 Unmodified _TYCAARNSYL_ 0 0 0 REV__ENST00000394563.4_1_X:85340081-85340624:-|nuORF REV__ENST00000394563.4_1_X:85340081-85340624:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8505554199219 3 387.850091 1160.52844 0.56114 0.00021764 2.2445 0.00087053 2.8056 0.0010882 387.85034081877944 36.537 0.28031 36.537 36.409 36.69 0 23 13 2 0 0 0 0.66569 1 19370 19370 3.5871 0.85186 1 9038000 + 66632 22311 44360 45362 77774 77774 -0.04539992785157665 TYCFPHSLRW 10 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))FPHSLRW_ TYC(1)FPHSLRW TYC(55)FPHSLRW 0 1 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS AL20221201_MKP_PDAC_01 4 683.8218994140625 2 683.821689 1365.62883 NaN NaN NaN NaN NaN NaN NaN 79.685 1 73.509 73.009 74.009 -6.1757 0 0 0 0.058206 1 52235 52235 55.235 34.82 1 66633 7311 44361 45363 77775 77775 715 -0.03936335731532381 TYCGKGFNDTF 11 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))GKGFNDTF_ TYC(1)GKGFNDTF TYC(99)GKGFNDTF 0 1 0 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 ENSG00000172818|ENST00000335987|OVOL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.2799072265625 2 655.27952 1308.54449 0.38534 0.00025251 0.5032 0.00032974 0.88854 0.00058224 655.2800506274923 46.249 0.43584 41.294 41.049 41.485 -4.9549 63 29 3 0 0 0 3.4633E-06 2 28582 28436;28582 98.73 65.285 1 33941000 66634 8259 44362 45364 77776;77777 77777 792 -0.09744331338947632 TYCLKCIRKW 10 2 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))LKC(Carbamidomethyl (C))IRKW_ TYC(1)LKC(1)IRKW TYC(43)LKC(43)IRKW 0 2 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;ENST00000546624.2_1_12:88177101-88177509:-|nuORF nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.5810546875 3 476.581058 1426.72135 0.303 0.00014441 -0.84284 -0.00040168 -0.53984 -0.00025728 476.58062820551913 40.084 0.38094 35.555 35.291 35.672 -4.5294 61 33 2 0 0 0 0.12584 1 23748 23748 42.835 36.212 1 43082000 66635 4521 44363 45365 77778 77778 465;466 0.02505426010361589 TYCLKCIRKW 10 2 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))LKC(Carbamidomethyl (C))IRKW_ TYC(1)LKC(1)IRKW TYC(44)LKC(44)IRKW 0 2 0 nc|ENSG00000133606|Q9UHC7-4|MKRN1;ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;ENST00000546624.2_1_12:88177101-88177509:-|nuORF nc|ENSG00000133606|Q9UHC7-4|MKRN1 nc|ENSG00000133606|Q9UHC7-4|MKRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.5810852050781 3 476.581058 1426.72135 0.65899 0.00031406 -0.13242 -6.3106E-05 0.52657 0.00025095 476.5810303769337 66.699 1.7979 60.523 59.541 61.339 -6.1757 147 102 2 0 0 0 0.11322 2 43050 42910;43050 44.392 38.158 1 32568000 66636 4521 44363 45365 77779;77780 77780 465;466 0.02505426010361589 TYCLSCIRQW 10 2 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))IRQW_ TYC(1)LSC(1)IRQW TYC(170)LSC(170)IRQW 0 2 0 ENSG00000075975|ENST00000170447|MKRN2;nc|ENSG00000075975|Q9H000-2|MKRN2;MKRN2|p.R275W|1|0.17|ENSG00000075975|chr3:12574972-12574972|C/T|missense_variant ENSG00000075975|ENST00000170447|MKRN2 ENSG00000075975|ENST00000170447|MKRN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.8204956054688 2 693.818289 1385.62203 0.28625 0.00019861 -0.1323 -9.1794E-05 0.15395 0.00010681 693.8184774353435 66.116 0.68889 59.94 59.541 60.23 -6.1757 89 39 3 0 0 0 2.8263E-15 3 43086 42793;42941;43086 168.54 122.84 1 32999000 66637 1176 44364 45366 77781;77782;77783 77783 106;107 -0.05536016674386701 TYCNIPMTLI 10 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))NIPMTLI_ TYC(1)NIPMTLI TYC(56)NIPMTLI 0 1 0 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 ENSG00000169306|ENST00000378993|IL1RAPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3018798828125 2 613.30141 1224.58827 1.0967 0.00067263 4.0635 0.0024922 5.1603 0.0031648 613.3022603683244 94.083 0.51604 87.907 87.703 88.219 -6.1757 42 29 2 0 0 0 0.060508 2 62256 62256;62385 55.503 32.766 1 8732400 66638 7863 44365 45367 77784;77785 77784 765 -0.015044381661482475 TYCPTWDRY 9 Unmodified _TYCPTWDRY_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D REV__nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.27978515625 2 602.758223 1203.50189 -0.25659 -0.00015466 1.9378 0.001168 1.6812 0.0010134 603.2612659275482 71.912 0.14797 71.912 71.796 71.944 0 8 6 2 0 0 0 0.21367 1 40054 40054 4.756 0.42677 1 449850 + 66639 21379 44366 45368 77786 77786 -0.09171681676525623 TYCQNIKEF 9 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))QNIKEF_ TYC(1)QNIKEF TYC(100)QNIKEF 0 1 0 ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H ENSG00000147677|ENST00000521861|EIF3H MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.77880859375 2 601.779156 1201.54376 0.063361 3.8129E-05 -0.1231 -7.408E-05 -0.05974 -3.5951E-05 601.7791649562647 41.539 0.48257 36.931 36.703 37.186 -4.6079 96 31 4 0 0 0 0.0085857 3 24863 24863;24999;25131 100.71 45.303 1 192350000 66640 5875 44367 45369 77787;77788;77789 77787 594 -0.04895125987991378 TYCRIFSFS 9 Unmodified _TYCRIFSFS_ 0 0 0 ENST00000497966.1_1_9:14683712-14690382:-|nuORF ENST00000497966.1_1_9:14683712-14690382:-|nuORF ENST00000497966.1_1_9:14683712-14690382:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7363891601562 2 562.265684 1122.51682 0.25168 0.00014151 1.1769 0.00066172 1.4286 0.00080323 562.2666024176004 62.168 0.37364 62.168 61.951 62.324 0 38 18 3 0 0 0 0.20139 1 34729 34729 6.7232 5.0705 1 6083200 66641 14407 44368 45370 77790 77790 -0.03954189808496267 TYCSSFKLF 9 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))SSFKLF_ TYC(1)SSFKLF TYC(44)SSFKLF 0 1 0 nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2 nc|ENSG00000104221|Q9HAW0-2|BRF2 nc|ENSG00000104221|Q9HAW0-2|BRF2 MSMS AL20221201_MKP_PDAC_01 4 576.7743530273438 2 576.773342 1151.53213 NaN NaN NaN NaN NaN NaN NaN 70.368 1 64.192 63.692 64.692 -6.1757 0 0 0 0.098496 1 45984 45984 43.772 11.467 1 66642 2187 44369 45371 77791 77791 218 -0.03757323011313929 TYCTVCSKKF 10 2 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))TVC(Carbamidomethyl (C))SKKF_ TYC(1)TVC(1)SKKF TYC(67)TVC(67)SKKF 0 2 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.870849609375 3 431.870386 1292.58933 0.42549 0.00018376 -0.20101 -8.6808E-05 0.22448 9.6947E-05 431.8705104640112 26.354 0.36142 23.402 23.199 23.56 -2.9511 52 19 4 0 0 0 0.032752 2 14563 14445;14563 66.683 53.164 1 37707000 66643 8335 44370 45372 77792;77793 77793 800;801 -0.045262237972565345 TYCTVCSKKF 10 2 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))TVC(Carbamidomethyl (C))SKKF_ TYC(1)TVC(1)SKKF TYC(41)TVC(41)SKKF 0 2 0 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 ENSG00000173545|ENST00000308683|ZNF622 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.3035278320312 2 647.301941 1292.58933 0.22213 0.00014379 0.42817 0.00027716 0.65031 0.00042094 647.3027383278975 26.341 0.25771 23.39 23.244 23.502 -2.9511 27 13 3 0 0 0 0.14294 1 14555 14555 40.725 29.23 1 4951800 66644 8335 44370 45372 77794 77794 800;801 -0.045262237972565345 TYCVGHARY 9 Unmodified _TYCVGHARY_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2518920898438 2 535.247826 1068.4811 0.084061 4.4994E-05 2.3502 0.0012579 2.4343 0.0013029 535.2489286524107 69.091 0.3195 68.61 68.443 68.763 -0.48071 30 13 3 0 0 0 0.54444 1 37713 37713 4.756 1.1595 1 1736400 + 66645 21728 44371 45373 77795 77795 -0.050402272654991975 TYCVGHARY 9 Unmodified _TYCVGHARY_ 0 0 0 REV__ENSG00000163114|ENST00000295266|PDHA2 REV__ENSG00000163114|ENST00000295266|PDHA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.247826 1068.4811 0.084061 4.4994E-05 2.3502 0.0012579 2.4343 0.0013029 535.2489286524107 69.091 0.3195 68.61 68.443 68.763 -0.48071 0 0 NaN 4.756 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1736400 + 66646 21728 44371 45373 -0.050402272654991975 TYCYLVPYL 9 Carbamidomethyl (C) _TYC(Carbamidomethyl (C))YLVPYL_ TYC(1)YLVPYL TYC(60)YLVPYL 0 1 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2918701171875 2 596.291368 1190.56818 0.47943 0.00028588 -0.10313 -6.1496E-05 0.3763 0.00022438 596.2912616949778 99.502 0.20169 93.326 93.214 93.416 -6.1757 40 12 4 0 0 0 0.023164 1 66323 66323 60.39 20.432 1 218090000 66647 2653 44372 45374 77796 77796 268 -0.019478658344723954 TYDAEFQHF 9 Unmodified _TYDAEFQHF_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2498168945312 2 579.248546 1156.48254 0.33808 0.00019583 0.37437 0.00021685 0.71245 0.00041268 579.2483789568398 46.752 0.2267 46.752 46.631 46.858 0 25 10 3 0 0 0 0.0086904 1 25554 25554 107.19 71.06 1 9640100 66648 9907 44373 45375 77797 77797 -0.08944314695781941 TYDDHYNRH 9 Unmodified _TYDDHYNRH_ 0 0 0 ENSG00000157330|ENST00000614859|CFAP107 ENSG00000157330|ENST00000614859|CFAP107 ENSG00000157330|ENST00000614859|CFAP107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.6458129882812 2 610.757601 1219.50065 0.14593 8.9126E-05 1.583 0.00096685 1.729 0.001056 610.757885781573 80.93 0.49988 80.93 80.717 81.217 0 49 24 3 0 0 0 0.58865 1 44849 44849 2.0598 0 1 514960 66649 6511 44374 45376 77798 77798 -0.10032179721065404 TYDDMAEYF 9 Unmodified _TYDDMAEYF_ 0 0 0 REV__ENSG00000183891|ENST00000333610|TTC32 REV__ENSG00000183891|ENST00000333610|TTC32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.723388671875 2 577.720972 1153.42739 0.58527 0.00033812 0.081986 4.7365E-05 0.66726 0.00038549 577.7212513747746 59.776 0.39044 59.776 59.489 59.879 0 29 17 2 0 0 0 0.48152 1 33359 33359 8.5933 0 1 4621400 + 66650 23386 44375 45377 77799 77799 -0.1431848927854844 TYDDRAYSSF 10 Unmodified _TYDDRAYSSF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7610473632812 2 612.762017 1223.50948 0.49741 0.00030479 -0.087966 -5.3902E-05 0.40945 0.00025089 612.7618524910965 36.94 0.25898 36.94 36.818 37.076 0 30 12 3 0 0 0 0.040614 1 19599 19599 62.869 35.24 1 7467500 66651 16107;2451 44376 45378 77800 77800 -0.09333250875238264 TYDDRAYSSF 10 Unmodified _TYDDRAYSSF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.2635498046875 2 612.762017 1223.50948 0.69341 0.00042489 -0.68966 -0.0004226 0.003747 2.296E-06 612.761542788076 42.282 0.21276 37.597 37.508 37.721 -4.6846 22 13 2 0 0 0 0.040614 1 25575 25575 62.869 37.469 1 8577800 66652 16107;2451 44376 45378 77801 77801 -0.09333250875238264 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.77685546875 2 582.776605 1163.53866 0.16927 9.8645E-05 1.6793 0.00097863 1.8485 0.0010773 582.7776072366411 86.183 0.42709 86.183 85.952 86.379 0 49 20 3 0 0 0 0.54213 1 47812 47812 7.9102 3.1541 1 2066700 66653 2694 44377 45379 77802 77802 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.7774047851562 2 582.776605 1163.53866 1.238 0.00072147 -0.53233 -0.00031023 0.70567 0.00041125 582.7764139068248 95.482 0.87659 89.307 88.82 89.696 -6.1757 85 51 2 0 0 0 0.023481 3 63215 63097;63215;63375 77.984 58.727 1 18533000 66654 2694 44377 45379 77803;77804;77805 77804 -0.03657106578953062 TYDEIFYTL 9 Unmodified _TYDEIFYTL_ 0 0 0 ENSG00000110047|ENST00000320631|EHD1;ENST00000484846.1_1_11:64621807-64623066:-|nuORF ENSG00000110047|ENST00000320631|EHD1 ENSG00000110047|ENST00000320631|EHD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 582.776605 1163.53866 0.42999 0.00025059 1.7021 0.00099196 2.1321 0.0012426 582.7780476373372 86.7 0.35017 86.197 86.02 86.37 -0.50318 0.0072395 2.0075E-05 NaN 7.9102 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 753400 66655 2694 44377 45379 -0.03657106578953062 TYDEIGVMF 9 Oxidation (M) _TYDEIGVM(Oxidation (M))F_ TYDEIGVM(1)F TYDEIGVM(54)F 0 0 1 ENSG00000138031|ENST00000679454|ADCY3;nc|ENSG00000138031|O60266-2|ADCY3;ENST00000485887.1_1_2:25043436-25046221:-|nuORF ENSG00000138031|ENST00000679454|ADCY3 ENSG00000138031|ENST00000679454|ADCY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7430419921875 2 545.741708 1089.46886 0.42384 0.00023131 1.5062 0.00082198 1.93 0.0010533 545.7429027235748 67.236 0.54222 67.236 67.04 67.583 0 47 23 3 0 0 0 0.03327 1 37462 37462 53.576 35.441 1 2538000 66656 5005 44378 45380 77806 77806 913 -0.07229308519208644 TYDGAFLVV 9 Unmodified _TYDGAFLVV_ 0 0 0 REV__ENSG00000102218|ENST00000218340|RP2 REV__ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7558898925781 2 492.755475 983.496398 0.3143 0.00015487 0.54781 0.00026994 0.86211 0.00042481 492.7554446583829 54.932 0.45997 54.932 54.641 55.101 0 28 19 2 0 0 0 0.30562 1 30530 30530 16.942 4.4107 1 1761400 + 66657 18226 44379 45381 77807 77807 0.003989628033423287 TYDGNHDTF 9 Unmodified _TYDGNHDTF_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2141723632812 2 535.214703 1068.41485 -0.1883 -0.00010078 0.070604 3.7788E-05 -0.11769 -6.2991E-05 535.2145726162904 24.637 0.3946 24.637 24.386 24.781 0 39 21 2 0 0 0 0.07087 2 12620 12516;12620 39.95 16.801 1 2112400 66658 2322;4803;16212 44380 45382 77808;77809 77809 -0.11661764626569493 TYDGNHDTF 9 Unmodified _TYDGNHDTF_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;nc|ENSG00000105438|P24390-2|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1;ENSG00000136240|ENST00000258739|KDELR2;nc|ENSG00000136240|P33947-2|KDELR2 ENSG00000105438|ENST00000330720|KDELR1 MSMS AL20221201_MKP_PDAC_01 4 535.2147827148438 2 535.214703 1068.41485 NaN NaN NaN NaN NaN NaN NaN 27.749 1 24.712 24.212 25.212 -3.0365 0 0 0 0.0084204 1 15404 15404 96.111 56.161 1 66659 2322;4803;16212 44380 45382 77810 77810 -0.11661764626569493 TYDIQRIHF 9 Unmodified _TYDIQRIHF_ 0 0 0 nc|ENSG00000163873|Q13003-2|GRIK3;ENSG00000163873|ENST00000373091|GRIK3 nc|ENSG00000163873|Q13003-2|GRIK3 nc|ENSG00000163873|Q13003-2|GRIK3 MSMS AL20221201_MKP_PDAC_01 4 398.207763671875 3 398.208495 1191.60366 NaN NaN NaN NaN NaN NaN NaN 46.757 1 41.677 41.177 42.177 -5.0805 0 0 0 0.43483 1 28945 28945 12.873 0 1 66660 7088 44381 45383 77811 77811 0.015519327375386638 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.23486328125 2 511.234907 1020.45526 -0.43281 -0.00022127 -0.5876 -0.0003004 -1.0204 -0.00052167 511.2345994454215 34.134 0.40001 34.134 33.926 34.326 0 67 20 4 0 0 0 0.14054 2 17889 17889;17999 88.904 60.417 1 331920000 66661 5136 44382 45384 77812;77813 77812 -0.05414798236131446 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2344970703125 2 511.234907 1020.45526 -0.43745 -0.00022364 0.34339 0.00017555 -0.094061 -4.8087E-05 511.2349711966446 34.288 0.23049 34.097 33.944 34.174 -0.19131 20 8 3 0 0 0 0.19688 1 17886 17886 71.134 47.985 1 2712200 66662 5136 44382 45384 77814 77814 -0.05414798236131446 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2348937988281 2 511.234907 1020.45526 0.43851 0.00022418 -0.39257 -0.00020069 0.045946 2.3489E-05 511.23490364100905 34.002 0.22153 34.031 33.881 34.103 0.028934 17 9 2 0 0 0 0.24723 1 17899 17899 62.573 39.836 1 2564600 66663 5136 44382 45384 77815 77815 -0.05414798236131446 TYDKGYQF 8 Unmodified _TYDKGYQF_ 0 0 0 nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5 nc|ENSG00000139197|P50542-2|PEX5 nc|ENSG00000139197|P50542-2|PEX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2353210449219 2 511.234907 1020.45526 0.63191 0.00032305 -0.14868 -7.6008E-05 0.48323 0.00024704 511.2349098939819 38.232 0.58288 33.863 33.597 34.18 -4.3689 106 35 4 0 0 0 0.15594 2 22443 22443;22570 85.272 62.124 1 412920000 66664 5136 44382 45384 77816;77817 77816 -0.05414798236131446 TYDLMSSAYL 10 Unmodified _TYDLMSSAYL_ 0 0 0 ENSG00000147872|ENST00000276914|PLIN2;ENST00000475923.1_1_9:19126103-19126313:-|nuORF;ENST00000472715.1_1_9:19126103-19127487:-|nuORF ENSG00000147872|ENST00000276914|PLIN2 ENSG00000147872|ENST00000276914|PLIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2760009765625 2 582.26809 1162.52163 0.4865 0.00028328 1.722 0.0010026 2.2085 0.0012859 582.2688964301328 57.606 0.40172 57.606 57.371 57.772 0 26 19 2 0 0 0 0.60623 1 32139 32139 10.824 0 1 7778100 66665 5887 44383 45385 77818 77818 -0.053133504563902534 TYDNVHQQF 9 Unmodified _TYDNVHQQF_ 0 0 0 nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2587280273438 2 576.259445 1150.50434 -0.23233 -0.00013388 -0.99333 -0.00057242 -1.2257 -0.0007063 576.2584300565667 28.887 0.27896 28.887 28.723 29.002 0 25 13 3 0 0 0 0.010611 1 14924 14924 78.728 55.992 1 3294300 66666 5075 44384 45386 77819 77819 -0.06489509947186889 TYDNVHQQF 9 Unmodified _TYDNVHQQF_ 0 0 0 nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ENSG00000138639|ENST00000395184|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 nc|ENSG00000138639|Q8N264-3|ARHGAP24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2615356445312 2 576.259445 1150.50434 0.75437 0.00043471 0.85222 0.0004911 1.6066 0.00092581 576.2604723795314 32.679 0.31006 28.823 28.635 28.945 -3.8562 29 15 3 0 0 0 0.0087807 1 18638 18638 106.94 81.541 1 10182000 66667 5075 44384 45386 77820 77820 -0.06489509947186889 TYDPENYQL 9 Unmodified _TYDPENYQL_ 0 0 0 nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7542724609375 2 571.753661 1141.49277 0.63828 0.00036494 0.75279 0.00043041 1.3911 0.00079535 571.7539924188484 49.249 0.20001 49.249 49.152 49.352 0 19 9 3 0 0 0 0.05447 1 27090 27090 43.858 24.601 1 2250100 66668 16093 44385 45387 77821 77821 -0.07231751761173655 TYDPTYSDF 9 Unmodified _TYDPTYSDF_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7277221679688 2 554.727112 1107.43967 0.70879 0.00039318 -0.77853 -0.00043187 -0.06974 -3.8687E-05 554.7266848869871 50.02 0.31981 50.02 49.834 50.154 0 38 14 4 0 0 0 0.016184 2 27506 27506;27611 67.344 44.195 1 18324000 66669 2788 44386 45388 77822;77823 77822 -0.10975129543840012 TYDPTYSDF 9 Unmodified _TYDPTYSDF_ 0 0 0 ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR ENSG00000111424|ENST00000549336|VDR ENSG00000111424|ENST00000549336|VDR MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7274169921875 2 554.727112 1107.43967 0.27703 0.00015368 0.21056 0.0001168 0.48759 0.00027048 554.7272248025336 57.912 0.27511 51.885 51.787 52.062 -6.0275 23 15 2 0 0 0 0.042911 1 37080 37080 48.346 31.404 1 36535000 66670 2788 44386 45388 77824 77824 -0.10975129543840012 TYDPWIGKL 9 Unmodified _TYDPWIGKL_ 0 0 0 ENST00000462639.1_1_X:23803380-23803605:+|nuORF;ENSG00000130066|ENST00000379270|SAT1;ENST00000474223.1_1_X:23803122-23803970:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF ENST00000462639.1_1_X:23803380-23803605:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7907104492188 2 546.78985 1091.56515 0.5326 0.00029122 2.581 0.0014113 3.1136 0.0017025 546.7911226157318 64.246 0.25215 63.761 63.592 63.844 -0.48512 23 11 3 0 0 0 0.06294 1 35030 35030 41.84 22.401 1 2493400 66671 4178 44387 45389 77825 77825 0.023026271030403223 TYDPWTGSYL 10 Unmodified _TYDPWTGSYL_ 0 0 0 REV__ENSG00000182197|ENST00000378204|EXT1 REV__ENSG00000182197|ENST00000378204|EXT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7749633789062 2 601.771854 1201.52915 NaN NaN NaN NaN NaN NaN NaN 49.59 1 49.59 49.09 50.09 0 0 0 0 0.61917 1 27298 27298 20.454 1.1966 1 + 66672 23250 44388 45390 77826 77826 -0.06354874864473459 TYDPYDREL 9 Unmodified _TYDPYDREL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2664794921875 2 586.266936 1170.51932 0.54057 0.00031692 1.035 0.00060677 1.5755 0.00092369 586.2675349922297 72.581 0.35682 72.105 71.938 72.294 -0.47609 44 16 3 0 0 0 0.15471 2 39677 39677;39775 27.629 9.4825 1 9280400 66673 7270 44389 45391 77827;77828 77827 -0.05912062869856527 TYDPYDREL 9 Unmodified _TYDPYDREL_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2679443359375 2 586.266936 1170.51932 0.86674 0.00050814 0.32058 0.00018795 1.1873 0.00069609 586.2669123307949 80.163 0.45718 73.987 73.711 74.168 -6.1757 53 27 2 0 0 0 0.094149 3 52570 52446;52570;52705 34.402 10.381 1 42663000 66674 7270 44389 45391 77829;77830;77831 77830 -0.05912062869856527 TYDRVESLF 9 Unmodified _TYDRVESLF_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2822265625 2 565.279846 1128.54514 0.62218 0.00035171 -0.1907 -0.0001078 0.43149 0.00024391 565.2797237131384 57.127 0.33374 57.127 56.947 57.281 0 38 14 3 0 0 0 0.047714 1 31737 31737 45.74 13.434 1 7207600 66675 6106 44390 45392 77832 77832 -0.013991686275630855 TYDRVESLF 9 Unmodified _TYDRVESLF_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2777709960938 2 565.279846 1128.54514 0.58633 0.00033144 0.39628 0.00022401 0.98261 0.00055545 565.280088410733 57.627 0.24208 57.137 57.046 57.288 -0.48974 24 11 3 0 0 0 0.076472 1 31304 31304 38.615 10.986 1 3974800 66676 6106 44390 45392 77833 77833 -0.013991686275630855 TYDSVTDKF 9 Unmodified _TYDSVTDKF_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2511596679688 2 538.250754 1074.48696 0.20819 0.00011206 0.31888 0.00017164 0.52707 0.00028369 538.2512004095745 37.765 0.32073 37.765 37.604 37.925 0 35 15 4 0 0 0 0.011291 1 20084 20084 76.825 49.196 1 14199000 66677 3126 44391 45393 77834 77834 -0.047308502728583335 TYDSVTDKF 9 Unmodified _TYDSVTDKF_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000463046.5_1_2:61463458-61483580:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2518920898438 2 538.250754 1074.48696 0.57802 0.00031112 -0.89563 -0.00048208 -0.31762 -0.00017096 538.2501896760326 43.343 0.37152 38.578 38.419 38.791 -4.7648 44 25 2 0 0 0 0.029718 1 26319 26319 55.503 22.717 1 32582000 66678 3126 44391 45393 77835 77835 -0.047308502728583335 TYDVYCYV 8 Unmodified _TYDVYCYV_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;nc|ENSG00000038427|P13611-3|VCAN;nc|ENSG00000038427|P13611-4|VCAN nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.24267578125 2 513.217869 1024.42118 0.61421 0.00031522 -0.29241 -0.00015007 0.3218 0.00016515 513.7193975226676 60.558 0.31116 60.558 60.407 60.718 0 22 13 2 0 0 0 8.7369 1 33769 33769 9.3474 1.4373 1 1031100 66679 637 44392 45394 77836 77836 -0.0900496271940483 TYDWDCQLAL 10 Unmodified _TYDWDCQLAL_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.302734375 2 614.271164 1226.52777 0.27637 0.00016977 -1.6016 -0.0009838 -1.3252 -0.00081403 614.2705187643467 40.089 0.38001 40.089 39.812 40.192 0 24 18 2 0 0 0 0.22811 1 21564 21564 14.838 4.0143 1 1175500 66680 16604 44393 45395 77837 77837 -0.07642832224860285 TYDWKAIV 8 Unmodified _TYDWKAIV_ 0 0 0 REV__ENSG00000071051|ENST00000233154|NCK2 REV__ENSG00000071051|ENST00000233154|NCK2 MSMS AL20221201_MKP_PDAC_01 4 498.2643127441406 2 498.263468 994.512382 NaN NaN NaN NaN NaN NaN NaN 51.758 1 46.024 45.524 46.524 -5.7345 0 0 0 0.85111 1 32596 32596 20.871 2.7362 1 + 66681 17488 44394 45396 77838 77838 0.014906690402199274 TYDWSKNFE 9 Unmodified _TYDWSKNFE_ 0 0 0 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2625732421875 2 595.261653 1188.50875 -0.60388 -0.00035947 3.3296 0.001982 2.7257 0.0016225 595.2634304523268 55.808 0.13879 55.808 55.742 55.881 0 12 9 2 0 0 0 0.32871 1 31005 31005 15.847 4.2069 1 5138900 + 66682 22318 44395 45397 77839 77839 -0.07796045524264628 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2493286132812 2 597.248546 1192.48254 -0.21212 -0.00012669 0.13795 8.2388E-05 -0.074173 -4.43E-05 597.2485419526074 52.251 0.34424 52.251 52.079 52.423 0 47 14 4 0 0 0 0.0086722 1 28969 28969 88.954 66.218 1 11226000 66683 3227 44396 45398 77840 77840 -0.10600314695761881 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2485961914062 2 597.248546 1192.48254 0.42578 0.0002543 0.17038 0.00010176 0.59616 0.00035606 597.2485943256453 52.881 0.37524 52.429 52.219 52.594 -0.45173 66 18 5 0 0 0 0.0086904 2 28634 28533;28634 107.19 71.06 1 47938000 66684 3227 44396 45398 77841;77842 77842 -0.10600314695761881 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.248291015625 2 597.248546 1192.48254 0.6769 0.00040428 -0.39268 -0.00023453 0.28422 0.00016975 597.2482598991363 52.546 0.15794 52.487 52.388 52.546 -0.058918 17 7 3 0 0 0 0.028475 1 28462 28462 56.177 33.441 1 2288600 66685 3227 44396 45398 77843 77843 -0.10600314695761881 TYDYNFHSF 9 Unmodified _TYDYNFHSF_ 0 0 0 ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L ENSG00000116539|ENST00000392403|ASH1L ENSG00000116539|ENST00000392403|ASH1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2492065429688 2 597.248546 1192.48254 0.90824 0.00054245 0.49434 0.00029524 1.4026 0.00083769 597.24872050726 58.493 0.61438 52.418 52.165 52.779 -6.0745 106 33 5 0 0 0 0.0044708 3 37503 37376;37503;37632 118.89 82.768 1 192970000 66686 3227 44396 45398 77844;77845;77846 77845 -0.10600314695761881 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2493286132812 2 555.250557 1108.48656 0.4734 0.00026285 0.2684 0.00014903 0.74179 0.00041188 555.752366866422 87.053 0.20039 87.053 86.934 87.134 0 22 12 2 0 0 0 0.53666 1 48188 48188 5.2307 0.90143 1 341880 66687 7675 44397 45399 77847 77847 -0.06334225202044763 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2496337890625 2 555.250557 1108.48656 0.68461 0.00038013 1.6963 0.00094187 2.3809 0.001322 555.2516356119655 87.615 0.4067 87.111 86.855 87.262 -0.50423 47 18 3 0 0 0 0.2001 1 47851 47851 23.148 14.555 1 4024900 66688 7675 44397 45399 77848 77848 -0.06334225202044763 TYEAQFFGF 9 Unmodified _TYEAQFFGF_ 0 0 0 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 ENSG00000167842|ENST00000611091|MIS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2530517578125 2 555.250557 1108.48656 1.2835 0.00071264 0.23952 0.00013299 1.523 0.00084563 555.2506915081749 96.088 0.686 89.913 89.584 90.27 -6.1757 71 41 2 0 0 0 0.022193 2 63849 63699;63849 61.357 39.611 1 13700000 66689 7675 44397 45399 77849;77850 77850 -0.06334225202044763 TYECSECGKLF 11 Unmodified _TYECSECGKLF_ 0 0 0 ENST00000523439.1_1_19:58003464-58005455:+|nuORF;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419 ENST00000523439.1_1_19:58003464-58005455:+|nuORF ENST00000523439.1_1_19:58003464-58005455:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.26904296875 2 640.270306 1278.52606 0.8474 0.00054257 -0.88703 -0.00056794 -0.03963 -2.5374E-05 640.2695572619323 92.231 0.96278 86.055 85.401 86.364 -6.1757 189 56 4 0 0 0 0.50515 2 60995 60875;60995 16.149 3.1066 1 42252000 66690 2279 44398 45400 77851;77852 77852 -0.1020620930514724 TYECSECGKLF 11 Unmodified _TYECSECGKLF_ 0 0 0 ENST00000523439.1_1_19:58003464-58005455:+|nuORF;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419 ENST00000523439.1_1_19:58003464-58005455:+|nuORF ENST00000523439.1_1_19:58003464-58005455:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.18212890625 3 427.18263 1278.52606 1.2 0.00051262 -1.163 -0.00049682 0.036994 1.5803E-05 427.18190088808126 92.244 1.0992 86.069 85.351 86.45 -6.1757 229 64 5 0 0 0 0.71036 2 60924 60924;61180 1.3296 0.11481 1 45844000 66691 2279 44398 45400 77853;77854 77853 -0.1020620930514724 TYEEVFYFV 9 Unmodified _TYEEVFYFV_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.779541015625 2 598.779148 1195.54374 0.00050984 3.0528E-07 2.3224 0.0013906 2.3229 0.0013909 598.7805148992948 93.837 0.27201 93.837 93.744 94.016 0 24 18 2 0 0 0 0.58466 1 51898 51898 2.3027 1.5091 1 295080 66692 1241 44399 45401 77855 77855 -0.04620802716340222 TYEEVFYFV 9 Unmodified _TYEEVFYFV_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7801513671875 2 598.779148 1195.54374 0.44155 0.00026439 0.60873 0.00036449 1.0503 0.00062889 598.779411964632 94.384 0.273 93.963 93.838 94.111 -0.42044 23 14 2 0 0 0 0.49272 1 51599 51599 7.9102 4.3137 1 594580 66693 1241 44399 45401 77856 77856 -0.04620802716340222 TYEEVFYFV 9 Unmodified _TYEEVFYFV_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 598.8056030273438 2 598.779148 1195.54374 0.8054 0.00048225 0.2657 0.00015909 1.0711 0.00064135 598.7797744107412 100.09 0.11868 93.913 93.838 93.957 -6.1757 12 7 2 0 0 0 0.15672 1 66825 66825 26.884 14.352 1 11237000 66694 1241 44399 45401 77857 77857 -0.04620802716340222 TYEEYGYDDTY 11 Unmodified _TYEEYGYDDTY_ 0 0 0 nc|ENSG00000121774|Q07666-3|KHDRBS1;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 nc|ENSG00000121774|Q07666-3|KHDRBS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.5137023925781 3 473.513867 1417.51977 -0.72297 -0.00034234 -1.2879 -0.00060985 -2.0109 -0.00095219 473.8473649880489 77.751 0.18758 77.269 77.166 77.353 -0.4826 11 7 2 0 0 0 0.74157 1 42596 42596 0.094841 0 1 734910 66695 3599 44400 45402 77858 77858 -0.17228732731314267 TYEEYQAQR 9 Unmodified _TYEEYQAQR_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.270751953125 2 594.27001 1186.52547 -0.45895 -0.00027274 -1.2308 -0.00073145 -1.6898 -0.0010042 594.2692712378325 25.546 0.18742 25.546 25.447 25.634 0 12 8 2 0 0 0 0.43463 1 13116 13116 10.824 1.4408 1 717070 66696 9675 44401 45403 77859 77859 -0.06033544638353305 TYEFDSVGTF 10 Unmodified _TYEFDSVGTF_ 0 0 0 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2587280273438 2 583.256037 1164.49752 0.087507 5.1039E-05 1.1501 0.00067078 1.2376 0.00072182 583.2567679565374 65.517 0.37116 65.517 65.347 65.718 0 34 14 3 0 0 0 0.66569 1 36625 36625 6.7232 1.9672 1 7149600 + 66697 20636 44402 45404 77860 77860 -0.07814867618412791 TYEFDSVGTF 10 Unmodified _TYEFDSVGTF_ 0 0 0 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.256591796875 2 583.256037 1164.49752 0.025454 1.4846E-05 -0.048746 -2.8431E-05 -0.023291 -1.3585E-05 583.255939563833 66.153 0.31377 65.67 65.478 65.792 -0.48323 39 16 3 0 0 0 0.50944 1 36159 36159 15.847 0 1 15917000 + 66698 20636 44402 45404 77861 77861 -0.07814867618412791 TYEFDSVGTF 10 Unmodified _TYEFDSVGTF_ 0 0 0 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 REV__nc|ENSG00000143409|Q8N5J2-2|MINDY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2561645507812 2 583.256037 1164.49752 0.86537 0.00050473 -0.15764 -9.1944E-05 0.70773 0.00041279 583.2561144589537 72.63 0.43806 66.454 66.22 66.658 -6.1757 32 22 2 0 0 0 0.60623 1 47571 47571 10.824 0.64053 1 17619000 + 66699 20636 44402 45404 77862 77862 -0.07814867618412791 TYEGDNNILLQ 11 Unmodified _TYEGDNNILLQ_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.3117065429688 2 640.311874 1278.6092 0.36445 0.00023336 0.50546 0.00032365 0.86991 0.00055701 640.3122410852876 60.591 0.29227 60.591 60.451 60.743 0 24 12 3 0 0 0 0.68427 1 33775 33775 5.7319 2.4505 1 1840000 66700 1447 44403 45405 77863 77863 -0.018964332612767976 TYEGIFKTL 9 Unmodified _TYEGIFKTL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF;ENST00000561539.1_1_16:28836974-28837213:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2894897460938 2 536.289682 1070.56481 0.34519 0.00018512 -1.2337 -0.00066164 -0.88855 -0.00047652 536.2890941553046 63.784 0.22383 63.299 63.15 63.373 -0.48551 17 10 2 0 0 0 0.033587 1 34756 34756 53.404 29.383 1 4572800 66701 7770 44404 45406 77864 77864 0.0323520738318166 TYEGIFKTL 9 Unmodified _TYEGIFKTL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF;ENST00000566080.1_1_16:28837054-28837213:+|nuORF;ENST00000561539.1_1_16:28836974-28837213:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2891235351562 2 536.289682 1070.56481 0.79916 0.00042858 -1.5912 -0.00085336 -0.79208 -0.00042478 536.28967025632 68.575 0.3855 62.399 62.289 62.675 -6.1757 28 21 2 0 0 0 0.020316 1 44760 44760 63.227 27.1 1 15998000 66702 7770 44404 45406 77865 77865 0.0323520738318166 TYEGKPIFL 9 Unmodified _TYEGKPIFL_ 0 0 0 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 ENSG00000132623|ENST00000378392|ANKEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2919311523438 2 534.292225 1066.5699 NaN NaN NaN NaN NaN NaN NaN 57.749 1 57.26 56.76 57.76 -0.48974 0 0 0 0.15549 1 31388 31388 36.127 3.8215 1 66703 4428 44405 45407 77866 77866 0.03927511245797177 TYEKIIDKL 9 Unmodified _TYEKIIDKL_ 0 0 0 REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2 REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.823974609375 2 561.823889 1121.63323 0.50578 0.00028416 0.34555 0.00019414 0.85133 0.0004783 561.8240687977958 41.22 0.22307 41.218 41.115 41.338 -0.0017929 17 10 2 0 0 0 0.094149 1 22021 22021 34.402 0 1 2441600 + 66704 18234 44406 45408 77867 77867 0.07727451963046406 TYEKYWPFY 9 Unmodified _TYEKYWPFY_ 0 0 0 nc|ENSG00000171766|P50440-3|GATM;nc|ENSG00000171766|P50440-2|GATM;ENSG00000171766|ENST00000396659|GATM nc|ENSG00000171766|P50440-3|GATM nc|ENSG00000171766|P50440-3|GATM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8840637207031 3 432.869368 1295.58628 -0.082432 -3.5682E-05 -3.9961 -0.0017298 -4.0785 -0.0017655 432.8673892568278 31.565 0.1712 31.595 31.499 31.67 0.030106 10 7 2 0 0 0 0.21806 1 16571 16571 2.7352 0 1 1770400 66705 8137 44407 45409 77868 77868 -0.04969407588100694 TYEKYWPFY 9 Unmodified _TYEKYWPFY_ 0 0 0 nc|ENSG00000171766|P50440-3|GATM;nc|ENSG00000171766|P50440-2|GATM;ENSG00000171766|ENST00000396659|GATM nc|ENSG00000171766|P50440-3|GATM nc|ENSG00000171766|P50440-3|GATM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 432.869368 1295.58628 0.09236 3.998E-05 -4.4772 -0.0019381 -4.3849 -0.0018981 433.20228101673314 31.682 0.14452 31.553 31.478 31.623 -0.12915 -0.021138 -0.00037746 NaN 8.1555 12 5 3 NaN NaN NaN NaN 0 NaN NaN 0 1475400 66706 8137 44407 45409 -0.04969407588100694 TYELRYFQI 9 Unmodified _TYELRYFQI_ 0 0 0 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8194580078125 2 616.819138 1231.62372 0.72585 0.00044772 -1.2638 -0.00077956 -0.53799 -0.00033185 616.8186679422015 72.383 0.35501 71.907 71.686 72.041 -0.47609 35 16 3 0 0 0 0.011291 1 39570 39570 76.825 30.804 1 5657400 66707 7022 44408 45410 77869 77869 0.01717683677520654 TYELRYFQI 9 Unmodified _TYELRYFQI_ 0 0 0 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 ENSG00000163584|ENST00000295830|RPL22L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8203735351562 2 616.819138 1231.62372 0.82437 0.00050849 -0.0058808 -3.6274E-06 0.81849 0.00050486 616.8190994626086 71.811 0.33031 71.85 71.664 71.994 0.039024 36 15 3 0 0 0 0.0081887 1 39513 39513 93.166 47.145 1 7507400 66708 7022 44408 45410 77870 77870 0.01717683677520654 TYENGNYFL 9 Unmodified _TYENGNYFL_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.7525024414062 2 560.750921 1119.48729 0.6692 0.00037525 -1.115 -0.00062522 -0.44578 -0.00024997 560.7499164591812 73.076 0.22082 73.076 72.905 73.126 0 12 9 2 0 0 0 0.5029 1 40650 40650 7.2892 2.0586 1 487170 66709 10814 44409 45411 77871 77871 -0.06767430553009035 TYENGNYFL 9 Unmodified _TYENGNYFL_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 560.750921 1119.48729 1.2686 0.00071139 -4.358 -0.0024438 -3.0894 -0.0017324 560.7481157592805 79.089 0.4381 72.914 72.694 73.132 -6.1757 -0.080984 -0.00026613 NaN 7.2892 44 23 3 NaN NaN NaN NaN 0 NaN NaN 0 15953000 66710 10814 44409 45411 -0.06767430553009035 TYEQCGGVVGI 11 Unmodified _TYEQCGGVVGI_ 0 0 0 REV__ENSG00000213995|ENST00000680254|NAXD REV__ENSG00000213995|ENST00000680254|NAXD MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.756591796875 2 563.265881 1124.51721 1.0607 0.00059747 -1.482 -0.00083477 -0.42129 -0.0002373 563.2659150358866 63.108 0.68197 56.932 56.544 57.226 -6.1757 96 36 4 0 0 0 0.54936 1 40577 40577 13.906 0.39817 1 141620000 + 66711 24301 44410 45412 77872 77872 -0.04006814879289777 TYEQVIYTL 9 Unmodified _TYEQVIYTL_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2930908203125 2 565.292422 1128.57029 NaN NaN NaN NaN NaN NaN NaN 71.21 1 71.21 70.71 71.71 0 0 0 0 0.41346 1 39667 39667 19.257 4.4187 1 66712 550 44411 45413 77873 77873 0.011148861750143624 TYERTLMMEQ 10 Unmodified _TYERTLMMEQ_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7;ENST00000514994.1_1_5:1057584-1063994:-|nuORF;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2948608398438 2 651.296856 1300.57916 NaN NaN NaN NaN NaN NaN NaN 54.565 1 54.565 54.065 55.065 0 0 0 0 0.94014 1 30295 30295 6.2058 0 1 66713 5210;2971;3744 44412 45414 77874 77874 -0.05910831522464832 TYEVVRLIH 9 Unmodified _TYEVVRLIH_ 0 0 0 REV__ENSG00000164161|ENST00000296575|HHIP REV__ENSG00000164161|ENST00000296575|HHIP MSMS AL20221201_MKP_PDAC_01 4 565.3243408203125 2 565.321848 1128.62914 NaN NaN NaN NaN NaN NaN NaN 25.176 1 22.293 21.793 22.793 -2.8831 0 0 0 0.82739 1 13762 13762 4.3292 0.73274 1 + 66714 21879 44413 45415 77875 77875 0.0699740725999618 TYEYLQLRF 9 Unmodified _TYEYLQLRF_ 0 0 0 nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8189086914062 2 616.819138 1231.62372 0.72585 0.00044772 -1.2638 -0.00077956 -0.53799 -0.00033185 616.8186679422015 72.383 0.35501 71.907 71.686 72.041 -0.47609 35 16 3 0 0 0 0.43463 1 39676 39676 10.824 0 1 5657400 66715 5976 44414 45416 77876 77876 0.017176836774979165 TYEYTWHSF 9 Unmodified _TYEYTWHSF_ 0 0 0 REV__ENSG00000092439|ENST00000646667|TRPM7;REV__nc|ENSG00000119121|Q9BX84-4|TRPM6 REV__ENSG00000092439|ENST00000646667|TRPM7 MSMS AL20221201_MKP_PDAC_01 4 411.8451843261719 3 411.845223 1232.51384 NaN NaN NaN NaN NaN NaN NaN 19.702 1 17.046 16.546 17.546 -2.6564 0 0 0 0.82396 1 10458 10458 2.7352 0.23671 1 + 66716 17911;19180 44415 45417 77877 77877 -0.09311741661667838 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2797241210938 2 589.279846 1176.54514 0.53787 0.00031695 0.8559 0.00050436 1.3938 0.00082132 589.2799696176065 46.425 0.31119 46.425 46.274 46.585 0 54 14 5 0 0 0 0.016448 1 25344 25344 82.529 57.538 1 21677000 66717 3233 44416 45418 77878 77878 -0.03607168627581814 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2808227539062 2 589.279846 1176.54514 0.88042 0.00051881 -2.1637 -0.001275 -1.2833 -0.00075621 589.2773840941585 52.682 0.33663 46.947 46.8 47.137 -5.7345 38 18 3 0 0 0 0.12357 1 33356 33356 39.95 22.837 1 48167000 66718 3233 44416 45418 77879 77879 -0.03607168627581814 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 589.279846 1176.54514 0.58814 0.00034658 0.06122 3.6075E-05 0.64936 0.00038265 589.2800671925767 46.766 0.23578 46.429 46.309 46.544 -0.33664 -0.0095469 -0.00041459 NaN 82.529 30 11 3 NaN NaN NaN NaN 0 NaN NaN 0 7328100 66719 3233 44416 45418 -0.03607168627581814 TYFDKNYNL 9 Unmodified _TYFDKNYNL_ 0 0 0 nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF nc|ENSG00000116641|Q96N67-4|DOCK7 nc|ENSG00000116641|Q96N67-4|DOCK7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 589.279846 1176.54514 1.1614 0.00068438 2.7205 0.0016031 3.8819 0.0022875 589.2820781229866 46.495 0.20332 46.462 46.369 46.572 -0.033417 0.023044 0.0027195 NaN 82.529 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1088100 66720 3233 44416 45418 -0.03607168627581814 TYFDQEQTAQ 10 Unmodified _TYFDQEQTAQ_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.7681274414062 2 615.7673 1229.52005 0.60652 0.00037347 0.29923 0.00018426 0.90575 0.00055773 615.7674441105493 66.605 0.21396 66.605 66.533 66.747 0 13 9 2 0 0 0 0.5933 1 37145 37145 11.495 1.4208 1 1538700 + 66721 21060 44417 45419 77880 77880 -0.08553268220794052 TYFDSVFRL 9 Unmodified _TYFDSVFRL_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENST00000549711.5_1_12:112487373-112518932:-|nuORF ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.2931518554688 2 574.292756 1146.57096 1.9193 0.0011022 -1.4627 -0.00084004 0.45657 0.00026221 574.2921618820627 81.861 0.3251 81.921 81.752 82.078 0.059929 29 12 3 0 0 0 0.094905 1 45255 45255 43.772 19.752 1 6123700 66722 2777 44418 45420 77881 77881 0.003537256147183143 TYFDSVFRL 9 Unmodified _TYFDSVFRL_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF;ENST00000549711.5_1_12:112487373-112518932:-|nuORF ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2943115234375 2 574.292756 1146.57096 1.5044 0.00086399 -0.77598 -0.00044564 0.72846 0.00041835 574.2926942960265 97.554 0.20155 91.378 91.24 91.441 -6.1757 18 10 2 0 0 0 0.030212 1 64640 64640 69.105 38.468 1 18574000 66723 2777 44418 45420 77882 77882 0.003537256147183143 TYFEEIKQF 9 Unmodified _TYFEEIKQF_ 0 0 0 ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H ENSG00000109111|ENST00000314616|SUPT6H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7979125976562 2 602.797872 1203.58119 NaN NaN NaN NaN NaN NaN NaN 59.865 1 59.374 58.874 59.874 -0.49079 0 0 0 0.46757 1 32580 32580 16.942 9.0321 1 66724 2632 44419 45421 77883 77883 -0.012457114507242295 TYFEKNFNL 9 Unmodified _TYFEKNFNL_ 0 0 0 nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.2906494140625 2 588.290214 1174.56587 0.038723 2.2781E-05 -0.38062 -0.00022391 -0.3419 -0.00020113 588.289352779199 56.951 0.49604 56.465 56.153 56.649 -0.48554 30 23 2 0 0 0 0.011671 1 30962 30962 75.761 44.492 1 10009000 66725 2473 44420 45422 77884 77884 -0.0144257824788383 TYFEKNFNL 9 Unmodified _TYFEKNFNL_ 0 0 0 nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 588.290214 1174.56587 -0.12376 -7.2804E-05 -0.073232 -4.3082E-05 -0.19699 -0.00011589 588.2900734537749 56.446 0.20375 56.446 56.361 56.564 0 -0.0094497 0.00026538 NaN 75.761 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 917740 66726 2473 44420 45422 -0.0144257824788383 TYFERFIFL 9 Unmodified _TYFERFIFL_ 0 0 0 REV__ENST00000467067.1_1_1:8074717-8074804:-|nuORF REV__ENST00000467067.1_1_1:8074717-8074804:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2203369140625 3 412.553492 1234.63865 0.43682 0.00018021 0.24381 0.00010058 0.68063 0.0002808 412.55386503308387 24.184 0.47293 21.356 21.142 21.614 -2.8273 52 25 3 0 0 0 0.45045 1 13188 13188 6.6304 0.84694 1 18837000 + 66727 27424 44421 45423 77885 77885 0.030711755455058665 TYFFTAVLI 9 Unmodified _TYFFTAVLI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7985229492188 2 537.797143 1073.57973 0.097173 5.2259E-05 1.0001 0.00053786 1.0973 0.00059012 537.797581122976 100.95 0.13508 100.91 100.84 100.98 -0.04216 7 4 2 0 0 0 0.052168 1 56088 56088 44.407 12.29 1 19691000 66728 458 44422 45424 77886 77886 0.04588699251212347 TYFFTAVLI 9 Unmodified _TYFFTAVLI_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7970581054688 2 537.797143 1073.57973 0.66186 0.00035595 -0.016727 -8.9955E-06 0.64514 0.00034695 537.7970322738539 101.6 0.21553 95.422 95.309 95.524 -6.1757 21 10 3 0 0 0 0.010877 1 68183 68183 77.984 31.063 1 129260000 66729 458 44422 45424 77887 77887 0.04588699251212347 TYFGHSEQI 9 Unmodified _TYFGHSEQI_ 0 0 0 ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MSMS AL20221201_MKP_PDAC_01 4 541.2529907226562 2 541.251089 1080.48762 NaN NaN NaN NaN NaN NaN NaN 40.405 1 35.876 35.376 36.376 -4.5294 0 0 0 0.13463 1 24123 24123 49.933 13.806 1 66730 2429 44423 45425 77888 77888 -0.04940010833138331 TYFGPPCKCF 10 Unmodified _TYFGPPCKCF_ 0 0 0 REV__ENSG00000166147|ENST00000316623|FBN1 REV__ENSG00000166147|ENST00000316623|FBN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8505554199219 3 388.173517 1161.49872 0.54513 0.0002116 -0.88212 -0.00034242 -0.33699 -0.00013081 388.1727888154635 36.61 0.22306 36.61 36.487 36.71 0 15 10 2 0 0 0 0.23896 1 19370 19370 1.7423 0 1 2236800 + 66731 22087 44424 45426 77889 77889 -0.07556648054878679 TYFGVRALHR 10 Unmodified _TYFGVRALHR_ 0 0 0 ENSG00000088827|ENST00000344754|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1 ENSG00000088827|ENST00000344754|SIGLEC1 ENSG00000088827|ENST00000344754|SIGLEC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2290649414062 3 407.228001 1218.66217 1.3259 0.00053995 1.1781 0.00047977 2.5041 0.0010197 407.2286482934715 21.408 0.3978 18.673 18.485 18.882 -2.7348 125 35 4 0 0 0 0.67046 1 11494 11494 6.1918 0.78914 1 48187000 66732 1498 44425 45427 77890 77890 0.06159034102688565 TYFHLLQTL 9 Unmodified _TYFHLLQTL_ 0 0 0 ENSG00000221829|ENST00000378643|FANCG ENSG00000221829|ENST00000378643|FANCG ENSG00000221829|ENST00000378643|FANCG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3131713867188 2 568.310949 1134.60735 0.31945 0.00018154 -1.1284 -0.0006413 -0.80899 -0.00045976 568.3114301290669 77.664 0.28439 77.715 77.533 77.818 0.05069 23 11 3 0 0 0 0.047714 1 42844 42844 58.679 12.979 1 5762200 66733 10550 44426 45428 77891 77891 0.045426025114238655 TYFIDEMMI 9 Unmodified _TYFIDEMMI_ 0 0 0 REV__ENST00000358154.7_1_16:21666912-21667038:+|nuORF REV__ENST00000358154.7_1_16:21666912-21667038:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2398681640625 2 581.761586 1161.50862 -0.068154 -3.9649E-05 -0.43449 -0.00025277 -0.50264 -0.00029242 581.7622880517315 76.642 0.15833 76.162 76.097 76.255 -0.47945 12 8 2 0 0 0 0.21798 1 42007 42007 2.3027 0 1 1188600 + 66734 25868 44427 45429 77892 77892 -0.06567504840131733 TYFIQQLL 8 Unmodified _TYFIQQLL_ 0 0 0 ENSG00000106526|ENST00000683684|ACTR3C;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;ENSG00000133627|ENST00000256001|ACTR3B;ENST00000415792.5_1_2:114670765-114697700:+|nuORF;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000106526|ENST00000683684|ACTR3C;ENSG00000115091|ENST00000263238|ACTR3 ENSG00000115091|ENST00000263238|ACTR3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.2340698242188 2 513.286943 1024.55933 0.63917 0.00032808 1.4769 0.00075807 2.1161 0.0010861 513.2878697753691 62.243 0.24611 56.067 56.002 56.248 -6.1757 19 13 2 0 0 0 8.7369 1 40209 40209 5.2307 0 1 11995000 66735 2435;3085 44428 45430 77893 77893 0.04803528591401118 TYFLESEPF 9 Unmodified _TYFLESEPF_ 0 0 0 ENSG00000112276|ENST00000314641|BVES ENSG00000112276|ENST00000314641|BVES ENSG00000112276|ENST00000314641|BVES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7633056640625 2 566.763497 1131.51244 0.38699 0.00021933 4.2928 0.002433 4.6798 0.0026523 567.26794180237 47.196 0.317 47.196 47.022 47.339 0 41 14 4 0 0 0 0.32235 1 25865 25865 11.64 0 1 10746000 66736 2875 44429 45431 77894 77894 -0.048053757504249006 TYFNLAEAAR 10 Unmodified _TYFNLAEAAR_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant;LAMA3-TAF4B|1|fusion nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2992553710938 2 578.293288 1154.57202 0.66254 0.00038314 3.9353 0.0022758 4.5979 0.0026589 578.2958316861831 99.918 0.11457 93.742 93.677 93.792 -6.1757 14 8 2 0 0 0 0.087164 1 66716 66716 49.527 5.7549 1 34593000 66737 748 44430 45432 77895 77895 0.0009193998359933175 TYFPGPPG 8 Unmodified _TYFPGPPG_ 0 0 0 nc|ENSG00000101191|Q9BTC0-1|DIDO1;ENSG00000101191|ENST00000395343|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 nc|ENSG00000101191|Q9BTC0-1|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2034606933594 2 418.202879 834.391205 0.73694 0.00030819 1.4156 0.000592 2.1525 0.00090019 418.20345823089076 81.577 0.62244 81.081 80.747 81.369 -0.4952 65 25 3 0 0 0 0.81107 2 44674 44674;44783 0 0 1 1504000 66738 1928 44431 45433 77896;77897 77896 -0.032615336024150565 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.801513671875 2 616.800946 1231.58734 0.75527 0.00046585 0.33083 0.00020406 1.0861 0.00066991 616.8010167312666 60.108 0.37723 60.108 59.923 60.301 0 54 16 5 0 0 0 0.060956 2 33565 33457;33565 42.312 20.776 1 26738000 66739 3602 44432 45434 77898;77899 77899 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.796875 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 60.545 1 60.055 59.555 60.555 -0.48932 0 0 0 0.10661 1 32971 32971 41.956 0 1 66740 3602 44432 45434 77900 77900 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8013916015625 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 60.731 1 60.242 59.742 60.742 -0.48932 0 0 0 0.032269 1 33074 33074 65.474 15.919 1 66741 3602 44432 45434 77901 77901 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.8005981445312 2 616.800946 1231.58734 0.56022 0.00034555 -2.2713 -0.0014009 -1.7111 -0.0010554 616.799308296192 60.316 0.2438 60.272 60.127 60.371 -0.04351 28 12 3 0 0 0 0.018061 1 32859 32859 65.474 28.967 1 18992000 66742 3602 44432 45434 77902 77902 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.800048828125 2 616.800946 1231.58734 0.56956 0.00035131 -0.2556 -0.00015765 0.31396 0.00019365 616.800524857304 69.775 0.74619 63.6 63.132 63.879 -6.1757 90 40 3 0 0 0 3.7274E-10 3 45461 45461;45581;45703 168.54 105.96 1 80684000 66743 3602 44432 45434 77903;77904;77905 77903 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 616.799072265625 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 68.503 1 62.328 61.828 62.828 -6.1757 0 0 0 0.032269 1 44717 44717 65.474 33.168 1 66744 3602 44432 45434 77906 77906 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 616.7985229492188 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 68.682 1 62.507 62.007 63.007 -6.1757 0 0 0 0.10415 1 44840 44840 42.312 17.322 1 66745 3602 44432 45434 77907 77907 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 616.7991333007812 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 68.871 1 62.695 62.195 63.195 -6.1757 0 0 0 0.023462 1 44965 44965 74.2 32.244 1 66746 3602 44432 45434 77908 77908 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 616.8006591796875 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 69.056 1 62.881 62.381 63.381 -6.1757 0 0 0 0.076188 1 45089 45089 49.527 24.536 1 66747 3602 44432 45434 77909 77909 -0.019191932191688466 TYFRFQEEI 9 Unmodified _TYFRFQEEI_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 616.8001708984375 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 69.234 1 63.058 62.558 63.558 -6.1757 0 0 0 0.10415 1 45216 45216 42.312 14.684 1 66748 3602 44432 45434 77910 77910 -0.019191932191688466 TYFSRRLVRF 10 Unmodified _TYFSRRLVRF_ 0 0 0 nc|ENSG00000168268|Q9H857-4|NT5DC2;nc|ENSG00000168268|Q9H857|NT5DC2;nc|ENSG00000168268|Q9H857-3|NT5DC2;ENSG00000168268|ENST00000422318|NT5DC2 nc|ENSG00000168268|Q9H857-4|NT5DC2 nc|ENSG00000168268|Q9H857-4|NT5DC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.9240112304688 3 448.922689 1343.74624 1.4714 0.00066055 -1.0721 -0.00048128 0.39934 0.00017927 449.2552981905917 100.12 0.21038 93.946 93.804 94.014 -6.1757 18 12 2 0 0 0 0.69626 1 66923 66923 3.3196 1.4133 1 33456000 66749 7739 44433 45435 77911 77911 0.08811565199584948 TYFSTPLLL 9 Unmodified _TYFSTPLLL_ 0 0 0 nc|ENSG00000146701|P40926-2|MDH2;ENSG00000146701|ENST00000315758|MDH2;ENST00000424167.2_1_7:75689738-75694307:+|nuORF nc|ENSG00000146701|P40926-2|MDH2 nc|ENSG00000146701|P40926-2|MDH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7941284179688 2 527.794601 1053.57465 2.4126 0.0012733 -1.4377 -0.00075883 0.97484 0.00051451 527.7938293601427 96.745 0.42487 96.738 96.475 96.9 -0.007019 48 15 4 0 0 0 0.013472 2 53663 53663;53769 70.716 40.491 1 15011000 66750 5790 44434 45436 77912;77913 77912 0.05000395388583456 TYFTHCPILRI 11 Carbamidomethyl (C) _TYFTHC(Carbamidomethyl (C))PILRI_ TYFTHC(1)PILRI TYFTHC(41)PILRI 0 1 0 ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF ENSG00000067248|ENST00000251636|DHX29 ENSG00000067248|ENST00000251636|DHX29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2515258789062 3 474.251707 1419.73329 1.2064 0.00057215 -0.11366 -5.3905E-05 1.0928 0.00051824 474.2516700819814 86.697 0.3729 80.521 80.358 80.731 -6.1757 28 19 2 0 0 0 0.11523 1 57162 57162 40.714 34.091 1 10189000 66751 955 44435 45437 77914 77914 85 0.04021366025176576 TYFTMATLQQD 11 Unmodified _TYFTMATLQQD_ 0 0 0 ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000419769.6_1_10:127430814-127452038:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF ENST00000525091.5_1_10:127408310-127436620:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2062377929688 3 440.204311 1317.5911 0.5266 0.00023181 2.8601 0.001259 3.3867 0.0014908 440.2060398320484 28.201 0.22898 28.154 28.038 28.267 -0.046408 20 8 3 0 0 0 0.44182 1 14534 14534 11.631 5.397 1 6117900 66752 2533 44436 45438 77915 77915 -0.05498891507636472 TYFTQHFSI 9 Unmodified _TYFTQHFSI_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.279052734375 2 572.277106 1142.53966 0.50358 0.00028819 1.1676 0.00066822 1.6712 0.0009564 572.2787490138571 58.181 0.34956 58.181 57.99 58.34 0 22 13 2 0 0 0 0.36964 1 32411 32411 13.906 0 1 1158500 + 66753 20613 44437 45439 77916 77916 -0.02590847419378406 TYFVHHLPW 9 Unmodified _TYFVHHLPW_ 0 0 0 ENST00000312275.9_1_3:157296100-157296295:+|nuORF ENST00000312275.9_1_3:157296100-157296295:+|nuORF ENST00000312275.9_1_3:157296100-157296295:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.0450744628906 3 400.538064 1198.59236 -0.086274 -3.4556E-05 -0.28275 -0.00011325 -0.36902 -0.00014781 400.53794181321047 33.679 0.34913 33.708 33.582 33.931 0.028934 25 14 2 0 0 0 0.21302 1 17798 17798 5.7319 1.5423 1 4235900 66754 11701 44438 45440 77917 77917 0.001011554340720977 TYFWFTHF 8 Unmodified _TYFWFTHF_ 0 0 0 REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7632446289062 2 574.763635 1147.51272 0.88752 0.00051012 -0.16387 -9.4185E-05 0.72366 0.00041593 574.7631264339863 47.636 0.48835 47.636 47.427 47.916 0 79 22 4 0 0 0 0.67481 1 26030 26030 19.439 1.304 1 18270000 + 66755 26747 44439 45441 77918 77918 -0.05513911239904701 TYFWFTHF 8 Unmodified _TYFWFTHF_ 0 0 0 REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7645263671875 2 574.763635 1147.51272 0.7072 0.00040647 -1.2652 -0.00072721 -0.55804 -0.00032074 574.7629785604465 48.014 0.55762 47.661 47.347 47.905 -0.3526 96 27 4 0 0 0 0.67481 3 25631 25631;25733;25835 19.439 2.4967 1 61831000 + 66756 26747 44439 45441 77919;77920;77921 77919 -0.05513911239904701 TYFWFTHF 8 Unmodified _TYFWFTHF_ 0 0 0 REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7674560546875 2 574.763635 1147.51272 0.63611 0.00036561 -0.63256 -0.00036357 0.0035579 2.045E-06 575.2656759341668 47.671 0.49573 47.633 47.411 47.907 -0.038647 73 23 5 0 0 0 0.67481 3 25637 25637;25705;25807 19.439 2.4967 1 12070000 + 66757 26747 44439 45441 77922;77923;77924 77922 -0.05513911239904701 TYFWFTHF 8 Unmodified _TYFWFTHF_ 0 0 0 REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF REV__ENST00000414543.5_1_6:28871573-28871822:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2655639648438 2 574.763635 1147.51272 0.63611 0.00036561 -0.63256 -0.00036357 0.0035579 2.045E-06 575.2656759341668 47.671 0.49573 47.633 47.411 47.907 -0.038647 73 23 5 0 0 0 8.7369 1 25705 25705 19.439 2.4967 1 12070000 + 66758 26747 44439 45441 77925 77925 -0.05513911239904701 TYFYVFNSCC 10 Unmodified _TYFYVFNSCC_ 0 0 0 REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.1692504882812 3 416.168432 1245.48347 0.40623 0.00016906 2.5546 0.0010631 2.9608 0.0012322 416.1694418232173 67.195 0.23204 66.713 66.634 66.866 -0.48218 16 10 2 0 0 0 0.68844 1 36702 36702 4.1895 1.1943 1 964030 + 66759 27894 44440 45442 77926 77926 -0.12945559642685112 TYFYVFNSCC 10 Unmodified _TYFYVFNSCC_ 0 0 0 REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 416.168432 1245.48347 0.20359 8.4728E-05 3.1505 0.0013111 3.354 0.0013958 416.1697797291271 66.624 0.21344 66.624 66.512 66.725 0 -0.044458 0.0002048 NaN 4.1895 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1125400 + 66760 27894 44440 45442 -0.12945559642685112 TYFYVFNSCC 10 Unmodified _TYFYVFNSCC_ 0 0 0 REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF REV__ENST00000491545.5_1_22:41175111-41195081:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 416.168432 1245.48347 0.40623 0.00016906 2.5546 0.0010631 2.9608 0.0012322 416.1694418232173 67.195 0.23204 66.713 66.634 66.866 -0.48218 0.044458 -0.00053917 NaN 4.1895 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 964030 + 66761 27894 44440 45442 -0.12945559642685112 TYGAFLQKF 9 Unmodified _TYGAFLQKF_ 0 0 0 nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000465252.5_1_17:74079731-74080394:-|nuORF;ENST00000467586.5_1_17:74079731-74084011:-|nuORF nc|ENSG00000182473|Q9UPT5-2|EXOC7 nc|ENSG00000182473|Q9UPT5-2|EXOC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7845458984375 2 537.784567 1073.55458 0.28569 0.00015364 0.93861 0.00050477 1.2243 0.00065841 537.7848054816441 61.956 0.27408 61.923 61.789 62.063 -0.032787 37 13 5 0 0 0 0.047196 1 33828 33828 46.021 32.513 1 8372400 66762 9057 44441 45443 77927 77927 0.02074644448634899 TYGALETVEKY 11 Unmodified _TYGALETVEKY_ 0 0 0 REV__ENSG00000101986|ENST00000218104|ABCD1;REV__ENSG00000173208|ENST00000308666|ABCD2 REV__ENSG00000101986|ENST00000218104|ABCD1 MSMS AL20221201_MKP_PDAC_01 4 637.3175048828125 2 637.319168 1272.62378 NaN NaN NaN NaN NaN NaN NaN 72.478 1 66.302 65.802 66.802 -6.1757 0 0 0 0.69598 1 47418 47418 21.537 7.6309 1 + 66763 18211;22710 44442 45444 77928 77928 -0.0016236111314356094 TYGDAGLTYTF 11 Unmodified _TYGDAGLTYTF_ 0 0 0 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7771606445312 2 604.777136 1207.53972 0.067855 4.1037E-05 0.040089 2.4245E-05 0.10794 6.5282E-05 604.7771374620633 66.635 0.41786 66.635 66.421 66.839 0 51 18 4 0 0 0 0.0069872 2 37104 37104;37209 71.922 52.665 1 13116000 66764 9724 44443 45445 77929;77930 77929 -0.05574892210051985 TYGDAGLTYTF 11 Unmodified _TYGDAGLTYTF_ 0 0 0 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.77734375 2 604.777136 1207.53972 0.37713 0.00022808 -0.73182 -0.00044259 -0.35469 -0.00021451 604.776404362038 67.193 0.3924 66.711 66.547 66.939 -0.48219 52 17 5 0 0 0 0.0029835 2 36763 36665;36763 78.728 59.471 1 11363000 66765 9724 44443 45445 77931;77932 77932 -0.05574892210051985 TYGDAGLTYTF 11 Unmodified _TYGDAGLTYTF_ 0 0 0 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 ENSG00000189046|ENST00000429722|ALKBH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.77685546875 2 604.777136 1207.53972 0.49485 0.00029927 -0.027752 -1.6784E-05 0.4671 0.00028249 604.7769905076759 74.137 0.54347 67.961 67.724 68.268 -6.1757 70 27 3 0 0 0 4.6554E-06 3 48389 48389;48507;48633 96.111 70.712 1 68703000 66766 9724 44443 45445 77933;77934;77935 77933 -0.05574892210051985 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1133.55029296875 1 1133.55135 1132.54408 0.33946 0.0003848 -0.061407 -6.9609E-05 0.27805 0.00031519 1133.5509409882618 63.878 0.21637 63.393 63.275 63.492 -0.48512 19 12 2 0 0 0 0.0082968 1 34824 34824 117.76 69.415 1 5769000 66767 6109 44444 45446 77936 77936 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.27978515625 2 567.279315 1132.54408 1.0984 0.00062309 -0.45485 -0.00025802 0.64353 0.00036506 567.2790239811358 69.032 1.2832 62.856 62.402 63.685 -6.1757 230 70 4 0 0 0 0.010362 6 45113 44874;44993;45113;45248;45375;45495 86.332 72.426 1 1386800000 66768 6109 44444 45446 77937;77938;77939;77940;77941;77942 77939 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2797241210938 2 567.279315 1132.54408 1.2489 0.00070848 -0.37043 -0.00021014 0.87849 0.00049835 567.279027802343 71.048 1.2407 64.872 64.083 65.324 -6.1757 187 64 4 0 0 0 0.030186 3 46531 46414;46531;46650 67.838 53.932 1 619960000 66769 6109 44444 45446 77943;77944;77945 77944 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2797241210938 2 567.279315 1132.54408 1.1255 0.00063845 0.06649 3.7718E-05 1.1919 0.00067617 567.2792817549263 72.063 3.0839 65.888 65.222 68.306 -6.1757 526 158 7 0 0 0 0.020676 15 46905 46769;46905;47052;47188;47301;47422;47540;47662;47787;47907;48025;48137;48254;48373;48576 76.825 56.371 1 1388000000 66770 6109 44444 45446 77946;77947;77948;77949;77950;77951;77952;77953;77954;77955;77956;77957;77958;77959;77960 77947 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1133.550659179688 1 1133.55135 1132.54408 0.85033 0.0009639 -0.76391 -0.00086593 0.086425 9.7967E-05 1133.5508304407208 72.096 0.89353 65.92 65.745 66.639 -6.1757 63 46 2 0 0 0 0.0082968 2 47368 47368;47536 117.76 65.492 1 22111000 66771 6109 44444 45446 77961;77962 77961 -0.016893829964601537 TYGEIFEKF 9 Unmodified _TYGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1133.55135 1132.54408 -0.40401 -0.00045796 1.1101 0.0012583 0.70608 0.00080038 1133.5526854613486 63.414 0.29487 63.414 63.295 63.59 0 0.01068 0.00049671 NaN 117.76 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3998900 66772 6109 44444 45446 -0.016893829964601537 TYGERFCYL 9 Carbamidomethyl (C) _TYGERFC(Carbamidomethyl (C))YL_ TYGERFC(1)YL TYGERFC(51)YL 0 1 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.7734375 2 604.773874 1207.53319 0.37323 0.00022572 -0.23095 -0.00013967 0.14229 8.6052E-05 604.7735675257691 51.993 0.2139 51.559 51.474 51.688 -0.43367 20 10 2 0 0 0 0.037253 1 28071 28071 51.415 35.266 1 3298800 66773 6435 44445 45447 77963 77963 638 -0.062271086424289024 TYGERFCYL 9 Carbamidomethyl (C) _TYGERFC(Carbamidomethyl (C))YL_ TYGERFC(1)YL TYGERFC(110)YL 0 1 0 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 ENSG00000156162|ENST00000414645|DPY19L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7734375 2 604.773874 1207.53319 0.53185 0.00032165 0.87358 0.00052832 1.4054 0.00084997 604.7738503766144 57.363 0.64577 51.335 51.035 51.681 -6.0275 124 35 5 0 0 0 0.0061223 3 36531 36531;36654;36779 114.2 81.896 1 314090000 66774 6435 44445 45447 77964;77965;77966 77964 638 -0.062271086424289024 TYGFLPLQSMA 11 Unmodified _TYGFLPLQSMA_ 0 0 0 REV__ENSG00000266714|ENST00000645453|MYO15B REV__ENSG00000266714|ENST00000645453|MYO15B MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.30908203125 2 614.307549 1226.60055 1.3343 0.00081965 2.6544 0.0016306 3.9887 0.0024503 614.3088690479055 64.237 0.40169 58.061 57.861 58.262 -6.1757 45 20 3 0 0 0 0.2736 1 41551 41551 41.956 3.78 1 21045000 + 66775 24608 44446 45448 77967 77967 -0.0036907843145854713 TYGGSWKF 8 Unmodified _TYGGSWKF_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2265625 2 473.226885 944.439217 0.91957 0.00043516 -0.44584 -0.00021098 0.47373 0.00022418 473.2266124568012 50.029 0.24061 49.637 49.532 49.772 -0.3923 23 11 3 0 0 0 0.40602 1 26912 26912 43.858 26.916 1 3742100 66776 5778 44447 45449 77968 77968 -0.035224596823809406 TYGGSWKF 8 Unmodified _TYGGSWKF_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2272338867188 2 473.226885 944.439217 0.90755 0.00042948 0.1134 5.3663E-05 1.0209 0.00048314 473.2268223591034 49.72 0.29294 49.671 49.512 49.805 -0.048828 31 14 3 0 0 0 0.42686 1 26865 26865 41.84 25.992 1 4640700 66777 5778 44447 45449 77969 77969 -0.035224596823809406 TYGGSWKF 8 Unmodified _TYGGSWKF_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2276611328125 2 473.226885 944.439217 0.68614 0.0003247 0.18205 8.6151E-05 0.86819 0.00041085 473.2269579064433 54.629 0.4163 48.764 48.542 48.959 -5.8653 58 25 3 0 0 0 0.29252 2 34606 34606;34743 56.177 27.69 1 43801000 66778 5778 44447 45449 77970;77971 77970 -0.035224596823809406 TYGGSWKFLTF 11 Unmodified _TYGGSWKFLTF_ 0 0 0 nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 nc|ENSG00000146416|Q9NVV5-6|AIG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.8276977539062 2 653.826963 1305.63937 1.1849 0.00077471 -1.5491 -0.0010128 -0.36419 -0.00023812 653.8268246048626 98.399 0.091064 92.223 92.176 92.267 -6.1757 8 5 2 0 0 0 0.0086238 1 65285 65285 69.338 29.389 1 15609000 66779 5778 44448 45450 77972 77972 -0.001220298054477098 TYGITVAEL 9 Unmodified _TYGITVAEL_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.5169677734375 1 966.514239 965.506963 0.25845 0.00024979 -0.61468 -0.0005941 -0.35623 -0.0003443 966.5135250574207 69.223 0.26002 69.223 69.066 69.326 0 17 11 2 0 0 0 0.14602 1 38541 38541 28.487 9.0478 1 617920 66780 5575 44449 45451 77973 77973 0.02282945457761798 TYGKHPSGQPS 11 Unmodified _TYGKHPSGQPS_ 0 0 0 REV__RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant REV__RAPGEF6|p.E1444Vfs*45|1|0.1|ENSG00000158987|chr5:131430993-131430994|-/AA|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7809448242188 2 579.780544 1157.54654 0.014123 8.1883E-06 -0.39399 -0.00022843 -0.37986 -0.00022024 579.7803595896892 31.61 0.41814 31.61 31.482 31.9 0 36 20 2 0 0 0 0.65108 1 16564 16564 8.7454 1.4562 1 4587700 + 66781 21454 44450 45452 77974 77974 -0.025935345388234055 TYGKIDLGF 9 Unmodified _TYGKIDLGF_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2682495117188 2 507.26875 1012.52295 -0.61609 -0.00031253 0.69716 0.00035364 0.081061 4.1119E-05 507.2690023085871 61.008 0.32013 60.519 60.374 60.694 -0.48932 27 15 2 0 0 0 0.01085 1 33203 33203 78.06 41.933 1 6841500 66782 7005 44451 45453 77975 77975 0.017186516946708252 TYGKIDLGF 9 Unmodified _TYGKIDLGF_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.271484375 2 507.26875 1012.52295 0.40925 0.0002076 0.54091 0.00027439 0.95016 0.00048199 507.2687477898312 66.655 0.67955 60.479 60.23 60.91 -6.1757 55 38 2 0 0 0 0.024189 1 43300 43300 59.368 23.241 1 33113000 66783 7005 44451 45453 77976 77976 0.017186516946708252 TYGKIDLGF 9 Unmodified _TYGKIDLGF_ 0 0 0 ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A;ENST00000487834.5_1_3:108281971-108308222:-|nuORF ENSG00000163507|ENST00000295746|CIP2A ENSG00000163507|ENST00000295746|CIP2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.26875 1012.52295 0.79438 0.00040297 -0.090401 -4.5858E-05 0.70398 0.00035711 507.2687912122388 60.521 0.19545 60.521 60.407 60.603 0 0.014672 -0.00061323 NaN 78.06 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 843150 66784 7005 44451 45453 0.017186516946708252 TYGKPVTF 8 Unmodified _TYGKPVTF_ 0 0 0 ENST00000560910.5_1_15:102186874-102192564:-|nuORF;ENST00000559024.5_1_15:102186874-102192564:-|nuORF;nc|ENSG00000184277|Q9BRN9-2|TM2D3;ENSG00000184277|ENST00000333202|TM2D3 ENST00000560910.5_1_15:102186874-102192564:-|nuORF ENST00000560910.5_1_15:102186874-102192564:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.7457885742188 2 456.744911 911.475269 1.0988 0.00050185 0.55172 0.000252 1.6505 0.00075385 456.74494735806206 40.745 0.16022 36.215 36.13 36.29 -4.5294 16 9 2 0 0 0 0.46468 1 24384 24384 38.176 13.502 1 6590600 66785 9239 44452 45454 77977 77977 0.015989974944773166 TYGLIKLAF 9 Unmodified _TYGLIKLAF_ 0 0 0 ENSG00000274070|ENST00000616305|CASTOR2;ENST00000544802.5_1_7:72569162-72589455:+|nuORF ENSG00000274070|ENST00000616305|CASTOR2 ENSG00000274070|ENST00000616305|CASTOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.305419921875 2 513.305136 1024.59572 0.39978 0.00020521 2.0423 0.0010483 2.4421 0.0012535 513.3055020495495 79.78 0.25751 79.835 79.672 79.93 0.05497 13 9 2 0 0 0 0.23158 1 44085 44085 20.454 9.6297 1 1995400 66786 10898 44453 45455 77978 77978 0.08440405488067881 TYGNLLDYL 9 Unmodified _TYGNLLDYL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2713623046875 2 536.27149 1070.52843 0.30156 0.00016172 0.13568 7.2763E-05 0.43724 0.00023448 536.2714540690222 95.709 0.33234 95.341 95.178 95.51 -0.36815 45 19 3 0 0 0 0.34999 1 52246 52246 14.838 6.245 1 1422700 66787 1679 44454 45456 77979 77979 -0.004016695135305781 TYGNLLDYL 9 Unmodified _TYGNLLDYL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1071.53662109375 1 1071.5357 1070.52843 0.25329 0.00027141 0.61419 0.00065812 0.86748 0.00092954 1071.536835422846 95.734 0.18698 95.366 95.236 95.423 -0.36814 17 11 2 0 0 0 0.013041 2 52252 52252;52270 71.922 35.795 1 692200 66788 1679 44454 45456 77980;77981 77980 -0.004016695135305781 TYGNLLDYL 9 Unmodified _TYGNLLDYL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2719116210938 2 536.27149 1070.52843 1.121 0.00060114 0.77126 0.0004136 1.8922 0.0010147 536.2720669472285 100.27 0.30309 94.091 93.898 94.202 -6.1757 39 18 3 0 0 0 0.031062 1 66986 66986 54.774 8.7526 1 68050000 66789 1679 44454 45456 77982 77982 -0.004016695135305781 TYGNLLDYL 9 Unmodified _TYGNLLDYL_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.27149 1070.52843 2.1441 0.0011498 0.16348 8.7672E-05 2.3075 0.0012375 536.2718306433536 95.304 0.24638 95.308 95.241 95.487 0.004158 -0.016398 2.8251E-05 NaN 14.838 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 599260 66790 1679 44454 45456 -0.004016695135305781 TYGNPNYHW 9 Unmodified _TYGNPNYHW_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2490844726562 2 576.24888 1150.48321 0.4077 0.00023494 -0.91588 -0.00052777 -0.50817 -0.00029283 576.2484269889089 39.535 0.26134 39.535 39.4 39.661 0 18 11 2 0 0 0 0.16226 1 21209 21209 26.884 16.81 1 2652500 66791 9309 44455 45457 77983 77983 -0.08601475256068625 TYGNPNYHW 9 Unmodified _TYGNPNYHW_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2490234375 2 576.24888 1150.48321 0.23493 0.00013538 0.076597 4.4139E-05 0.31153 0.00017952 576.2491485723314 39.894 0.28542 39.597 39.45 39.735 -0.29716 30 13 3 0 0 0 0.016184 1 21041 21041 67.344 55.103 1 5088800 66792 9309 44455 45457 77984 77984 -0.08601475256068625 TYGNPNYHW 9 Unmodified _TYGNPNYHW_ 0 0 0 nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 nc|ENSG00000184979|Q9UMW8-2|USP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2476806640625 2 576.24888 1150.48321 0.56637 0.00032637 -0.57867 -0.00033346 -0.012299 -7.0874E-06 576.2483630829212 44.088 0.40071 39.323 39.126 39.527 -4.7648 62 27 3 0 0 0 0.019303 2 26799 26799;26934 64.236 41.5 1 55614000 66793 9309 44455 45457 77985;77986 77985 -0.08601475256068625 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 986.4622802734375 1 986.46181 985.454533 -0.23336 -0.0002302 0.96118 0.00094817 0.72782 0.00071797 986.4626595540993 76.767 0.38876 76.287 76.111 76.5 -0.47945 45 18 3 0 0 0 0.026094 2 42080 41978;42080 57.471 29.298 1 4181400 66794 7991 44456 45458 77987;77988 77988 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7342834472656 2 493.734543 985.454533 0.050816 2.509E-05 0.8258 0.00040772 0.87661 0.00043281 493.73477081756704 76.773 0.34886 76.293 76.13 76.479 -0.47945 41 16 3 0 0 0 0.052168 2 42001 42001;42108 44.407 21.259 1 5399800 66795 7991 44456 45458 77989;77990 77989 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7339172363281 2 493.734543 985.454533 0.39126 0.00019318 -1.2272 -0.0006059 -0.83592 -0.00041272 493.7339343593734 76.221 0.2609 76.269 76.16 76.421 0.047951 15 10 2 0 0 0 0.087258 1 42079 42079 36.044 15.173 1 3438400 66796 7991 44456 45458 77991 77991 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.4631958007812 1 986.46181 985.454533 0.99697 0.00098348 -0.32496 -0.00032056 0.67201 0.00066291 986.46132522167 83.682 0.54203 77.507 77.235 77.777 -6.1757 67 28 3 0 0 0 0.019303 3 55184 54931;55057;55184 64.236 28.109 1 42861000 66797 7991 44456 45458 77992;77993;77994 77994 -0.03877592885191916 TYGPSFPAF 9 Unmodified _TYGPSFPAF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7348327636719 2 493.734543 985.454533 1.0138 0.00050053 0.16141 7.9695E-05 1.1752 0.00058022 493.7345617678119 83.672 0.58527 77.497 77.212 77.798 -6.1757 78 30 3 0 0 0 0.052168 2 54999 54999;55125 44.407 23.536 1 72208000 66798 7991 44456 45458 77995;77996 77995 -0.03877592885191916 TYGQEAYFI 9 Unmodified _TYGQEAYFI_ 0 0 0 ENSG00000241128|ENST00000366485|OR14A2 ENSG00000241128|ENST00000366485|OR14A2 ENSG00000241128|ENST00000366485|OR14A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7352905273438 2 546.25584 1090.49713 0.52911 0.00028903 0.22484 0.00012282 0.75395 0.00041185 546.2554767306677 56.874 0.51385 50.897 50.668 51.181 -5.9769 88 30 4 0 0 0 0.19127 1 36179 36179 24.021 1.2843 1 288180000 66799 10681 44457 45459 77997 77997 -0.044502425476366625 TYGRPGWPL 9 Unmodified _TYGRPGWPL_ 0 0 0 ENST00000588409.1_1_19:10745470-10745652:+|nuORF ENST00000588409.1_1_19:10745470-10745652:+|nuORF ENST00000588409.1_1_19:10745470-10745652:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7725219726562 2 523.774534 1045.53451 0.30239 0.00015838 -3.4312 -0.0017972 -3.1288 -0.0016388 523.7727635498098 93.971 0.22533 93.551 93.39 93.616 -0.42043 12 9 2 0 0 0 0.49272 1 51328 51328 7.9102 2.1497 1 412940 66800 15646 44458 45460 77998 77998 0.013568935086595957 TYGSGGYALYF 11 Unmodified _TYGSGGYALYF_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7741088867188 2 599.774396 1197.53424 0.84807 0.00050865 -1.0564 -0.00063359 -0.20831 -0.00012494 599.7737301393165 81.01 0.38233 80.517 80.271 80.654 -0.49247 55 18 4 0 0 0 0.54936 1 44392 44392 13.906 1.3745 1 13924000 66801 4279 44459 45461 77999 77999 -0.05662571001857941 TYGSNPTNSF 10 Unmodified _TYGSNPTNSF_ 0 0 0 REV__nc|ENSG00000135387|Q14444-2|CAPRIN1 REV__nc|ENSG00000135387|Q14444-2|CAPRIN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.783447265625 2 544.238178 1086.4618 1.0106 0.00055002 -3.8441 -0.0020921 -2.8335 -0.0015421 544.2362881119158 59.226 0.26152 53.152 53.065 53.326 -6.0745 20 14 2 0 0 0 0.23227 1 38099 38099 10.824 1.4765 1 24515000 + 66802 20060 44460 45462 78000 78000 -0.07796905075429095 TYGVSFFLV 9 Unmodified _TYGVSFFLV_ 0 0 0 ENSG00000171914|ENST00000636159|TLN2;ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1 ENSG00000171914|ENST00000636159|TLN2;ENSG00000137076|ENST00000314888|TLN1 ENSG00000137076|ENST00000314888|TLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7744750976562 2 516.773668 1031.53278 1.1016 0.00056927 0.47885 0.00024746 1.5804 0.00081673 516.773608915557 101.21 0.11731 95.039 94.974 95.091 -6.1757 12 7 2 0 0 0 0.14602 1 67880 67880 28.487 9.0478 1 43421000 66803 4898;8159 44461 45463 78001 78001 0.018278397000358382 TYHDLRNIF 9 Unmodified _TYHDLRNIF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5358581542969 3 393.536612 1177.58801 0.89356 0.00035165 -3.4409 -0.0013541 -2.5473 -0.0010025 393.5349234517937 50.532 0.22249 50.119 49.992 50.214 -0.41351 22 10 3 0 0 0 0.29507 1 27206 27206 17.443 12.727 1 6409300 66804 907 44462 45464 78002 78002 0.0063164622049498576 TYHDLRNIF 9 Unmodified _TYHDLRNIF_ 0 0 0 ENSG00000065526|ENST00000375759|SPEN;SPEN|p.A1733Lfs*15|1|0.18|ENSG00000065526|chr1:15931436-15931442|TGCCAAG/-|frameshift_variant ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 393.536612 1177.58801 1.3222 0.00052032 -4.5352 -0.0017848 -3.213 -0.0012644 393.53474600005785 50.219 0.30368 50.17 49.947 50.25 -0.048824 0.025674 -0.00094101 NaN 17.443 24 14 3 NaN NaN NaN NaN 0 NaN NaN 0 2469300 66805 907 44462 45464 0.0063164622049498576 TYHDSRIHVCL 11 Unmodified _TYHDSRIHVCL_ 0 0 0 nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10 nc|ENSG00000125354|Q14141-3|SEPTIN6 nc|ENSG00000125354|Q14141-3|SEPTIN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.55810546875 3 448.555678 1342.6452 0.55175 0.00024749 2.4527 0.0011002 3.0045 0.0013477 448.556824681434 34.131 0.37569 34.16 33.993 34.369 0.028931 51 17 4 0 0 0 0.65846 1 17959 17959 4.1166 0 1 8760400 66806 3841 44463 45465 78003 78003 -0.012412545654115092 TYHEVVDEIYF 11 Unmodified _TYHEVVDEIYF_ 0 0 0 ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;ENSG00000134186|ENST00000370025|PRPF38B ENST00000467302.5_1_1:109235213-109236214:+|nuORF ENST00000467302.5_1_1:109235213-109236214:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.828857421875 2 707.8299 1413.64525 NaN NaN NaN NaN NaN NaN NaN 66.86 1 66.86 66.36 67.36 0 0 0 0 0.93969 1 37290 37290 2.7352 2.3345 1 66807 4566 44464 45466 78004 78004 -0.04502976084427246 TYHEVVDEIYF 11 Unmodified _TYHEVVDEIYF_ 0 0 0 ENST00000467302.5_1_1:109235213-109236214:+|nuORF;nc|ENSG00000134186|Q5VTL8-2|PRPF38B;ENSG00000134186|ENST00000370025|PRPF38B ENST00000467302.5_1_1:109235213-109236214:+|nuORF ENST00000467302.5_1_1:109235213-109236214:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.8292236328125 2 707.8299 1413.64525 0.3049 0.00021582 -1.3387 -0.00094757 -1.0338 -0.00073175 707.8293045312217 67.229 0.10651 66.747 66.716 66.822 -0.48218 6 4 2 0 0 0 0.50515 1 36746 36746 16.149 12.205 1 1106900 66808 4566 44464 45466 78005 78005 -0.04502976084427246 TYHFTTNSL 9 Unmodified _TYHFTTNSL_ 0 0 0 ENST00000377403.6_1_1:9326347-9326581:+|nuORF ENST00000377403.6_1_1:9326347-9326581:+|nuORF ENST00000377403.6_1_1:9326347-9326581:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2583618164062 2 542.258914 1082.50327 0.90982 0.00049336 -2.0965 -0.0011369 -1.1867 -0.0006435 542.2578482159987 59.31 0.44272 53.235 53.03 53.473 -6.0745 42 24 2 0 0 0 0.14602 1 38084 38084 28.487 5.7506 1 36815000 66809 12518 44465 45467 78006 78006 -0.034677243161013394 TYHGVFVNI 9 Unmodified _TYHGVFVNI_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C;ENST00000492514.1_1_21:38610748-38639601:-|nuORF;ENST00000475009.1_1_21:38610748-38639643:-|nuORF;nc|ENSG00000157538|O14972-2|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2757568359375 2 525.274367 1048.53418 0.2176 0.0001143 -1.4089 -0.00074004 -1.1913 -0.00062574 525.2744697610302 59.709 0.26508 59.218 59.048 59.313 -0.49079 28 12 3 0 0 0 0.08691 1 32452 32452 36.127 16.87 1 4140900 66810 6526 44466 45468 78007 78007 0.01185473788791569 TYHHCEQCHQ 10 Unmodified _TYHHCEQCHQ_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.1666259765625 3 429.166085 1284.47642 0.62142 0.00026669 0.019629 8.4242E-06 0.64105 0.00027512 429.1662327920441 17.671 0.34631 15.085 14.961 15.307 -2.5866 181 47 5 0 0 0 0.71123 2 9306 9201;9306 1.9064 1.3432 1 50752000 66811 9778 44467 45469 78008;78009 78009 -0.15443479470582133 TYHIKNYII 9 Unmodified _TYHIKNYII_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.8852844238281 3 388.885241 1163.63389 0.29954 0.00011649 -0.18064 -7.0248E-05 0.1189 4.6238E-05 388.8852415040115 46.089 0.17472 45.752 45.665 45.84 -0.33664 12 8 2 0 0 0 0.27545 1 24675 24675 18.373 8.2225 1 3663500 66812 1876 44468 45470 78010 78010 0.058622914027409934 TYHIKNYII 9 Unmodified _TYHIKNYII_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 388.885241 1163.63389 0.14791 5.7521E-05 0.57462 0.00022346 0.72253 0.00028098 389.2198304872069 45.844 0.20377 45.816 45.702 45.905 -0.028011 0.031917 0.00026434 NaN 18.373 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3646900 66813 1876 44468 45470 0.058622914027409934 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF nc|ENSG00000110172|Q9UHD1-2|CHORDC1 nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7632751464844 2 508.763635 1015.51272 -0.094411 -4.8033E-05 0.66493 0.00033829 0.57052 0.00029026 508.7638902100068 54.944 0.38065 54.466 54.27 54.65 -0.47798 58 18 4 0 0 0 0.038285 2 29737 29737;29846 50.855 31.404 1 21920000 66814 2706 44469 45471 78011;78012 78011 0.0055808876010132735 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF nc|ENSG00000110172|Q9UHD1-2|CHORDC1 nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7646179199219 2 508.763635 1015.51272 0.81239 0.00041331 0.4438 0.00022579 1.2562 0.0006391 508.76392545118676 60.162 0.47174 54.048 53.886 54.357 -6.1147 64 24 3 0 0 0 0.070838 2 38647 38647;38785 39.957 21.822 1 144850000 66815 2706 44469 45471 78013;78014 78013 0.0055808876010132735 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF nc|ENSG00000110172|Q9UHD1-2|CHORDC1 nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.763635 1015.51272 1.0671 0.00054291 -1.1439 -0.000582 -0.076836 -3.9091E-05 508.7632403085803 54.439 0.19612 54.439 54.309 54.505 0 -0.033503 -0.0014375 NaN 50.855 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1179700 66816 2706 44469 45471 0.0055808876010132735 TYHPGVPVF 9 Unmodified _TYHPGVPVF_ 0 0 0 nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000533739.1_1_11:89951170-89956122:-|nuORF;ENST00000533724.5_1_11:89947115-89956122:-|nuORF;ENST00000581139.1_1_18:2946096-2946618:-|nuORF nc|ENSG00000110172|Q9UHD1-2|CHORDC1 nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 508.763635 1015.51272 0.44514 0.00022647 -0.84715 -0.000431 -0.40201 -0.00020453 508.7629370091222 54.579 0.24131 54.512 54.422 54.663 -0.066936 0.040039 -0.0011355 NaN 50.855 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2044300 66817 2706 44469 45471 0.0055808876010132735 TYHPRCLLF 9 Unmodified _TYHPRCLLF_ 0 0 0 nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11 nc|ENSG00000088926|P03951-2|F11 nc|ENSG00000088926|P03951-2|F11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 574.75927734375 2 575.297319 1148.58008 1.1478 0.00066032 1.3693 0.00078774 2.5171 0.0014481 575.2978768796021 42.669 0.42974 37.984 37.779 38.209 -4.6846 57 28 3 0 0 0 0.20528 1 25663 25663 4.756 0.42677 1 29554000 66818 1503 44470 45472 78015 78015 0.011737956993783882 TYHPRCLLF 9 Unmodified _TYHPRCLLF_ 0 0 0 nc|ENSG00000088926|P03951-2|F11;ENSG00000088926|ENST00000403665|F11 nc|ENSG00000088926|P03951-2|F11 nc|ENSG00000088926|P03951-2|F11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 575.297319 1148.58008 0.15324 8.816E-05 3.025 0.0017403 3.1782 0.0018284 575.2981789416483 38.41 0.19764 38.123 37.977 38.174 -0.28687 0.069302 0.0016416 NaN 4.756 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 578460 66819 1503 44470 45472 0.011737956993783882 TYHQQPQF 8 Unmodified _TYHQQPQF_ 0 0 0 nc|ENSG00000130856|Q9UL36-2|ZNF236;nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 nc|ENSG00000130856|Q9UL36-2|ZNF236 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2450561523438 2 524.745973 1047.47739 0.21652 0.00011362 3.3465 0.0017561 3.563 0.0018697 525.2504717514429 58.065 0.42874 57.575 57.331 57.76 -0.48974 53 20 4 0 0 0 8.7369 1 31597 31597 9.3474 0.75416 1 4246700 66820 4272 44471 45473 78016 78016 -0.04444573767705151 TYHVGYPDF 9 Unmodified _TYHVGYPDF_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7487182617188 2 549.748182 1097.48181 0.60342 0.00033173 1.4464 0.00079513 2.0498 0.0011269 549.7491408049352 49.021 0.48698 43.625 43.337 43.824 -5.3961 102 31 4 0 0 0 0.30562 1 30704 30704 16.942 16.942 1 348700000 + 66821 17894 44472 45474 78017 78017 -0.06303109344821678 TYICPWENA 9 Unmodified _TYICPWENA_ 0 0 0 nc|ENSG00000277399|Q6PRD1|GPR179;ENSG00000277399|ENST00000616987|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 nc|ENSG00000277399|Q6PRD1|GPR179 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7388305664062 2 548.742042 1095.46953 NaN NaN NaN NaN NaN NaN NaN 66.878 1 66.395 65.895 66.895 -0.48323 0 0 0 0.32177 1 36531 36531 24.021 7.0783 1 66822 10923 44473 45475 78018 78018 -0.07438469079488641 TYIDKSTQL 9 Unmodified _TYIDKSTQL_ 0 0 0 ENSG00000119965|ENST00000481909|C10orf88 ENSG00000119965|ENST00000481909|C10orf88 ENSG00000119965|ENST00000481909|C10orf88 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7819213867188 2 534.782222 1067.54989 NaN NaN NaN NaN NaN NaN NaN 32.527 1 32.527 32.027 33.027 0 0 0 0 0.076083 1 16998 16998 49.554 3.8547 1 66823 3485 44474 45476 78019 78019 0.01881715515196447 TYIDLIFPDC 10 Unmodified _TYIDLIFPDC_ 0 0 0 nc|ENSG00000185339|P20062-2|TCN2;ENSG00000185339|ENST00000215838|TCN2;ENST00000471659.1_1_22:31011695-31013483:+|nuORF;ENST00000493542.1_1_22:31011707-31019156:+|nuORF nc|ENSG00000185339|P20062-2|TCN2 nc|ENSG00000185339|P20062-2|TCN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.7890014648438 2 600.286282 1198.55801 0.26434 0.00015868 1.7939 0.0010768 2.0582 0.0012355 600.788781408971 64.881 0.98582 58.706 58.28 59.266 -6.1757 158 55 4 0 0 0 0.62068 1 42068 42068 10.074 2.7847 1 76291000 66824 9363 44475 45477 78020 78020 -0.03332473559680693 TYIDQEKKL 9 Unmodified _TYIDQEKKL_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.3102416992188 2 569.311146 1136.60774 NaN NaN NaN NaN NaN NaN NaN 32.205 1 32.205 31.705 32.705 0 0 0 0 0.76439 1 16806 16806 7.2892 0 1 + 66825 20189 44476 45478 78021 78021 0.04489977440630355 TYIEGILPGF 10 Unmodified _TYIEGILPGF_ 0 0 0 REV__nc|ENSG00000057657|O75626-2|PRDM1 REV__nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2973022460938 2 555.297507 1108.58046 0.47082 0.00026144 0.28377 0.00015758 0.75459 0.00041902 555.2977245973548 87.155 0.38333 87.155 86.975 87.358 0 49 22 3 0 0 0 0.6606 1 48210 48210 7.2892 2.5332 1 835050 + 66826 17304 44477 45479 78022 78022 0.030514939002614483 TYIHALDNGLF 11 Unmodified _TYIHALDNGLF_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000278882.8_1_20:29623184-29624050:+|nuORF;ENST00000514482.1_1_4:190862182-190882061:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3222045898438 2 632.322045 1262.62954 0.036231 2.291E-05 -0.13085 -8.2738E-05 -0.094616 -5.9828E-05 632.3221079992571 85.483 0.3723 79.307 79.107 79.479 -6.1757 34 22 2 0 0 0 0.0094206 2 56195 56195;56353 74.2 47.932 1 15976000 66827 2656 44478 45480 78023;78024 78023 0.008727821891625354 TYIHQTLEQ 9 Unmodified _TYIHQTLEQ_ 0 0 0 REV__ENSG00000135587|ENST00000258052|SMPD2 REV__ENSG00000135587|ENST00000258052|SMPD2 MSMS AL20221201_MKP_PDAC_01 4 378.1916198730469 3 378.192623 1131.55604 NaN NaN NaN NaN NaN NaN NaN 21.912 1 19.177 18.677 19.677 -2.7348 0 0 0 0.82283 1 11765 11765 4.897 2.1618 1 + 66828 20079 44479 45481 78025 78025 -0.0044776625329632225 TYIIMVNSF 9 Unmodified _TYIIMVNSF_ 0 0 0 REV__nc|ENSG00000172175|Q9UDY8-2|MALT1 REV__nc|ENSG00000172175|Q9UDY8-2|MALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2774658203125 2 544.27826 1086.54197 0.17512 9.5315E-05 -0.86086 -0.00046855 -0.68574 -0.00037323 544.2776829146001 93.469 0.45479 93.011 92.812 93.267 -0.4574 37 19 3 0 0 0 0.4887 2 51048 51022;51048 12.532 4.6214 1 651810 + 66829 22630 44480 45482 78026;78027 78027 0.002158649940838586 TYIIMVNSF 9 Unmodified _TYIIMVNSF_ 0 0 0 REV__nc|ENSG00000172175|Q9UDY8-2|MALT1 REV__nc|ENSG00000172175|Q9UDY8-2|MALT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.778076171875 2 544.27826 1086.54197 0.17512 9.5315E-05 -0.86086 -0.00046855 -0.68574 -0.00037323 544.2776829146001 93.469 0.45479 93.011 92.812 93.267 -0.4574 37 19 3 0 0 0 0.20727 1 51022 51022 7.9102 3.1541 1 651810 + 66830 22630 44480 45482 78028 78028 0.002158649940838586 TYIKFINLF 9 Unmodified _TYIKFINLF_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF ENSG00000196961|ENST00000354293|AP2A1 ENSG00000196961|ENST00000354293|AP2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8320922851562 2 579.831517 1157.64848 1.2069 0.00069978 -0.56781 -0.00032924 0.63905 0.00037054 579.8311899918332 90.993 0.37542 91.029 90.817 91.193 0.036499 35 13 3 0 0 0 0.0094097 2 50653 50554;50653 82.529 42.423 1 42955000 66831 9890 44481 45483 78029;78030 78030 0.0759636355087423 TYIKFINLF 9 Unmodified _TYIKFINLF_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF ENSG00000196961|ENST00000354293|AP2A1 ENSG00000196961|ENST00000354293|AP2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.831787109375 2 579.831517 1157.64848 0.44636 0.00025881 0.65445 0.00037947 1.1008 0.00063828 579.8319468383146 99.674 0.18898 93.499 93.399 93.588 -6.1757 35 11 4 0 0 0 0.0087807 1 66423 66423 106.94 38.859 1 426290000 66832 9890 44481 45483 78031 78031 0.0759636355087423 TYIKFVNLF 9 Unmodified _TYIKFVNLF_ 0 0 0 nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2 nc|ENSG00000183020|O94973-3|AP2A2 nc|ENSG00000183020|O94973-3|AP2A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.822998046875 2 572.823692 1143.63283 0.11912 6.8234E-05 1.2255 0.00070202 1.3447 0.00077025 572.8241425530513 98.852 0.076645 92.676 92.626 92.702 -6.1757 10 5 2 0 0 0 0.053952 1 65655 65655 56.177 16.22 1 52856000 66833 9108 44482 45484 78032 78032 0.0667607703385329 TYIKNHQNLY 10 Unmodified _TYIKNHQNLY_ 0 0 0 REV__ENSG00000186777|ENST00000419098|ZNF732 REV__ENSG00000186777|ENST00000419098|ZNF732 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5042114257812 3 431.891055 1292.65134 0.24475 0.0001057 -0.29406 -0.000127 -0.049307 -2.1295E-05 431.89130325515885 20.259 0.50952 20.27 20.069 20.578 0.010553 37 27 2 0 0 0 0.23767 1 10317 10317 6.1918 1.4759 1 600320 + 66834 23593 44483 45485 78033 78033 0.016715869377549097 TYIKSPPFF 9 Unmodified _TYIKSPPFF_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2962646484375 2 550.294768 1098.57498 0.27328 0.00015039 1.7168 0.00094476 1.9901 0.0010952 550.2956719619889 66.776 0.24667 66.292 66.171 66.418 -0.48323 19 11 2 0 0 0 0.10247 1 36470 36470 32.786 21.145 1 1767600 66835 3658 44484 45486 78034 78034 0.029638151084100173 TYIKSPPFF 9 Unmodified _TYIKSPPFF_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2955932617188 2 550.294768 1098.57498 1.0499 0.00057777 0.087802 4.8317E-05 1.1377 0.00062609 550.2947115088602 66.298 0.43571 66.307 66.064 66.5 0.0095596 69 21 4 0 0 0 0.008513 2 36285 36285;36397 99.755 65.653 1 68978000 66836 3658 44484 45486 78035;78036 78035 0.029638151084100173 TYIKSPPFF 9 Unmodified _TYIKSPPFF_ 0 0 0 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.296875 2 550.294768 1098.57498 0.94691 0.00052108 -0.37469 -0.00020619 0.57222 0.00031489 550.2949392634027 74.265 0.79716 68.089 67.77 68.568 -6.1757 83 41 3 0 0 0 0.0081887 4 48832 48459;48581;48704;48832 99.755 65.653 1 27925000 66837 3658 44484 45486 78037;78038;78039;78040 78040 0.029638151084100173 TYIMEYIF 8 Unmodified _TYIMEYIF_ 0 0 0 ENST00000524606.1_1_11:14526548-14526680:-|nuORF ENST00000524606.1_1_11:14526548-14526680:-|nuORF ENST00000524606.1_1_11:14526548-14526680:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2598266601562 2 540.259536 1078.50452 1.1057 0.00059738 -2.1525 -0.0011629 -1.0468 -0.00056552 540.2584467478081 82.585 0.31331 82.647 82.474 82.788 0.062004 20 11 3 0 0 0 0.74163 1 45720 45720 13.508 4.1604 1 2230500 66838 14780 44485 45487 78041 78041 -0.03159226271577609 TYIMGEGKCL 10 Unmodified _TYIMGEGKCL_ 0 0 0 nc|ENSG00000114904|P51957-3|NEK4;nc|ENSG00000114904|P51957-2|NEK4;ENSG00000114904|ENST00000233027|NEK4 nc|ENSG00000114904|P51957-3|NEK4 nc|ENSG00000114904|P51957-3|NEK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.767822265625 2 557.767203 1113.51985 0.43903 0.00024488 -0.67009 -0.00037375 -0.23106 -0.00012888 557.7672334242621 65.314 0.3168 64.83 64.684 65 -0.48428 33 14 3 0 0 0 0.60623 1 35623 35623 10.824 0.64053 1 4743000 66839 3072 44486 45488 78042 78042 -0.03236682746000952 TYINHVVSV 9 Unmodified _TYINHVVSV_ 0 0 0 ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2800903320312 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 42.959 1 42.959 42.459 43.459 0 0 0 0 0.10661 1 23298 23298 41.956 13.469 1 66840 1922 44487 45489 78043 78043 0.030694564432451443 TYINHVVSV 9 Unmodified _TYINHVVSV_ 0 0 0 ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ ENSG00000101160|ENST00000217131|CTSZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.280029296875 2 516.279649 1030.54475 0.72525 0.00037443 -0.5735 -0.00029608 0.15175 7.8347E-05 516.2792079715688 48.804 0.41785 43.408 43.186 43.604 -5.3961 53 24 3 0 0 0 0.0082981 2 30344 30344;30471 96.936 55.096 1 92279000 66841 1922 44487 45489 78044;78045 78044 0.030694564432451443 TYINPFVSF 9 Unmodified _TYINPFVSF_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2776489257812 2 544.276575 1086.5386 1.7173 0.00093468 -0.11082 -6.0319E-05 1.6065 0.00087436 544.276412240847 92.856 0.68549 92.881 92.671 93.356 0.025444 72 26 3 0 0 0 0.018301 2 51675 51572;51675 65.235 45.978 1 12918000 66842 5110;2983 44488 45490 78046;78047 78047 -0.0012106178828616976 TYINPFVSF 9 Unmodified _TYINPFVSF_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2770385742188 2 544.276575 1086.5386 0.84621 0.00046057 0.67388 0.00036678 1.5201 0.00082735 544.2768852560725 99.985 0.22075 93.81 93.703 93.924 -6.1757 49 15 4 0 0 0 0.094149 1 66750 66750 34.402 9.0024 1 288490000 66843 5110;2983 44488 45490 78048 78048 -0.0012106178828616976 TYIPFYGIL 9 Unmodified _TYIPFYGIL_ 0 0 0 nc|ENSG00000134824|O95864-3|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENSG00000134824|ENST00000278840|FADS2;ENST00000522359.2_1_11:61630446-61630602:+|nuORF nc|ENSG00000134824|O95864-3|FADS2 nc|ENSG00000134824|O95864-3|FADS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7490234375 2 543.797143 1085.57973 0.038473 2.0921E-05 -0.72701 -0.00039534 -0.68853 -0.00037442 543.7966165989267 55.075 0.16476 54.597 54.548 54.712 -0.47798 11 7 2 0 0 0 0.20528 1 29860 29860 8.5933 4.6489 1 607360 66844 4643 44489 45491 78049 78049 0.04036699251173559 TYIPGTQITF 10 Unmodified _TYIPGTQITF_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.801513671875 2 570.800414 1139.58628 0.12694 7.2455E-05 1.5569 0.00088866 1.6838 0.00096111 570.8013376328994 78.653 0.25981 78.167 78.035 78.295 -0.48596 15 9 2 0 0 0 0.57893 1 43081 43081 12.241 2.1667 1 946250 66845 5298 44490 45492 78050 78050 0.022065924119033298 TYIPPLLVAF 10 Unmodified _TYIPPLLVAF_ 0 0 0 ENST00000561809.1_1_16:75589903-75590146:-|nuORF;ENST00000564576.1_1_16:75575341-75590122:-|nuORF;ENSG00000205084|ENST00000258173|TMEM231 ENST00000561809.1_1_16:75589903-75590146:-|nuORF ENST00000561809.1_1_16:75589903-75590146:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 567.33447265625 2 567.333893 1132.65323 NaN NaN NaN NaN NaN NaN NaN 101.93 1 95.751 95.251 96.251 -6.1757 0 0 0 0.044772 1 68417 68417 58.679 36.932 1 66846 10345 44491 45493 78051 78051 0.09221247693653822 TYIPPWQLI 9 Unmodified _TYIPPWQLI_ 0 0 0 REV__ENSG00000183035|ENST00000329312|CYLC1 REV__ENSG00000183035|ENST00000329312|CYLC1 MSMS AL20221201_MKP_PDAC_01 4 377.5456237792969 3 377.546337 1129.61718 NaN NaN NaN NaN NaN NaN NaN 46.866 1 41.786 41.286 42.286 -5.0805 0 0 0 0.51965 1 29023 29023 15.248 1.3424 1 + 66847 23313 44492 45494 78052 78052 0.05755790516809611 TYIPQLRF 8 Unmodified _TYIPQLRF_ 0 0 0 REV__ENSG00000185070|ENST00000330753|FLRT2 REV__ENSG00000185070|ENST00000330753|FLRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2994995117188 2 519.292559 1036.57057 0.38255 0.00019865 1.6061 0.00083404 1.9887 0.0010327 519.2924924369992 59.152 0.52373 59.091 58.762 59.286 -0.060719 87 25 5 0 0 0 0.67481 1 32120 32120 19.439 0 1 47436000 + 66848 23468 44493 45495 78053 78053 0.053743506855198575 TYIPSTQNPAF 11 Unmodified _TYIPSTQNPAF_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8062744140625 2 619.806228 1237.5979 0.045296 2.8075E-05 -1.6327 -0.0010119 -1.5874 -0.00098387 619.8054037414045 55.861 0.40656 55.383 55.132 55.538 -0.47798 33 19 2 0 0 0 0.15156 1 30251 30251 36.506 20.357 1 3463000 66849 6233 44494 45496 78054 78054 -0.011392105647928474 TYIPSTQNPAF 11 Unmodified _TYIPSTQNPAF_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MSMS AL20221201_MKP_PDAC_01 4 619.8048095703125 2 619.806228 1237.5979 NaN NaN NaN NaN NaN NaN NaN 63.211 1 57.035 56.535 57.535 -6.1757 0 0 0 0.10709 1 40840 40840 49.554 24.563 1 66850 6233 44494 45496 78055 78055 -0.011392105647928474 TYIPSTQNPAF 11 Unmodified _TYIPSTQNPAF_ 0 0 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 619.806228 1237.5979 0.22376 0.00013869 2.0359 0.0012619 2.2597 0.0014006 619.8075002034195 55.057 0.13996 55.057 54.986 55.126 0 -0.16282 0.0032882 NaN 36.506 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 422580 66851 6233 44494 45496 -0.011392105647928474 TYIPVPAKI 9 Unmodified _TYIPVPAKI_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.306640625 2 501.305136 1000.59572 -0.022027 -1.1042E-05 0.74277 0.00037236 0.72075 0.00036131 501.30531042242234 58.471 0.27122 57.98 57.818 58.09 -0.49079 24 12 2 0 0 0 0.05447 1 31751 31751 43.858 25.723 1 13540000 66852 393 44495 45497 78056 78056 0.09544405488077246 TYIPVPAKI 9 Unmodified _TYIPVPAKI_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 501.305136 1000.59572 0.75628 0.00037913 -1.9203 -0.00096267 -1.1641 -0.00058355 501.3039464264798 58.071 0.16219 58.005 57.91 58.072 -0.066036 0.012191 -0.0023946 NaN 43.858 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2643800 66853 393 44495 45497 0.09544405488077246 TYIQCIAAI 9 Carbamidomethyl (C) _TYIQC(Carbamidomethyl (C))IAAI_ TYIQC(1)IAAI TYIQC(44)IAAI 0 1 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7750244140625 2 526.775885 1051.53722 0.59299 0.00031237 1.3713 0.00072239 1.9643 0.0010348 526.7761204558133 78.173 0.30782 71.997 71.847 72.155 -6.1757 26 17 2 0 0 0 0.05447 1 51248 51248 43.858 14.777 1 23251000 66854 2794 44496 45498 78057 78057 290 0.013509808512708332 TYIQDAFQL 9 Unmodified _TYIQDAFQL_ 0 0 0 ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1 ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7776489257812 2 549.776939 1097.53933 0.35259 0.00019385 0.43027 0.00023656 0.78287 0.0004304 549.7770034149115 77.22 0.30603 77.22 77.033 77.339 0 30 14 3 0 0 0 0.12424 1 42920 42920 30.637 15.798 1 1379600 66855 14565;9991 44497 45499 78058 78058 -0.005542671392504417 TYIQDAFQL 9 Unmodified _TYIQDAFQL_ 0 0 0 ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1 ENST00000508737.1_1_4:38930819-38945175:+|nuORF;nc|ENSG00000197712|Q8IWE2-2|FAM114A1 nc|ENSG00000197712|Q8IWE2-2|FAM114A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7767333984375 2 549.776939 1097.53933 -0.76029 -0.00041799 0.49479 0.00027203 -0.2655 -0.00014597 549.7774375565641 77.652 0.35728 77.17 77.016 77.374 -0.4826 34 16 3 0 0 0 0.10734 2 42471 42471;42577 32.305 5.7733 1 3231700 66856 14565;9991 44497 45499 78059;78060 78059 -0.005542671392504417 TYIQILESF 9 Unmodified _TYIQILESF_ 0 0 0 ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM;nc|ENSG00000187790|Q8IYD8-2|FANCM ENSG00000187790|ENST00000267430|FANCM ENSG00000187790|ENST00000267430|FANCM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2952880859375 2 557.294965 1112.57538 0.55532 0.00030948 1.731 0.00096469 2.2863 0.0012742 557.2956807601862 98.264 0.27179 98.071 97.94 98.211 -0.19321 17 9 3 0 0 0 0.23158 1 53680 53680 20.454 11.86 1 651740 66857 9595 44498 45500 78061 78061 0.023591900376231933 TYIQILESF 9 Unmodified _TYIQILESF_ 0 0 0 ENSG00000187790|ENST00000267430|FANCM;nc|ENSG00000187790|Q8IYD8-3|FANCM;nc|ENSG00000187790|Q8IYD8-2|FANCM ENSG00000187790|ENST00000267430|FANCM ENSG00000187790|ENST00000267430|FANCM MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2958374023438 2 557.294965 1112.57538 0.91084 0.00050761 0.26559 0.00014801 1.1764 0.00065562 557.2948413679939 100.53 0.14751 94.359 94.27 94.418 -6.1757 16 8 2 0 0 0 0.0082485 1 67233 67233 96.285 25.151 1 176330000 66858 9595 44498 45500 78062 78062 0.023591900376231933 TYIQKIFRM 9 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ TYIQKIFRM(1) TYIQKIFRM(44) 0 0 1 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8906555175781 3 405.889998 1214.64816 0.058239 2.3639E-05 -0.08195 -3.3263E-05 -0.023711 -9.624E-06 405.89007296211236 43.772 0.29755 43.756 43.528 43.825 -0.015667 34 13 3 0 0 0 0.05483 1 23397 23397 43.772 34.228 1 50922000 66859 1447 44499 45501 78063 78063 249 0.04942620559381794 TYIQKIFRM 9 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ TYIQKIFRM(1) TYIQKIFRM(97) 0 0 1 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3316650390625 2 608.331359 1214.64816 0.38137 0.000232 -0.48004 -0.00029203 -0.098675 -6.0027E-05 608.8326567504153 43.784 0.2089 43.769 43.594 43.803 -0.015667 23 9 3 0 0 0 0.0082981 1 23432 23432 96.936 64.63 1 27372000 66860 1447 44499 45501 78064 78064 249 0.04942620559381794 TYIQKIFRM 9 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ TYIQKIFRM(1) TYIQKIFRM(63) 0 0 1 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8903503417969 3 405.889998 1214.64816 NaN NaN NaN NaN NaN NaN NaN 43.843 1 43.827 43.327 44.327 -0.015667 0 0 0 0.037345 1 23505 23505 63.227 48.27 1 66861 1447 44499 45501 78065 78065 249 0.04942620559381794 TYIQKIFRM 9 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ TYIQKIFRM(1) TYIQKIFRM(51) 0 0 1 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8910522460938 3 405.889998 1214.64816 0.89877 0.0003648 0.44538 0.00018078 1.3441 0.00054558 405.8902357272118 48.77 0.33476 43.374 43.17 43.505 -5.3961 33 19 2 0 0 0 0.037253 2 30327 30327;30449 51.415 39.24 1 47224000 66862 1447 44499 45501 78066;78067 78066 249 0.04942620559381794 TYIQKIFRM 9 Oxidation (M) _TYIQKIFRM(Oxidation (M))_ TYIQKIFRM(1) TYIQKIFRM(65) 0 0 1 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.32958984375 2 608.331359 1214.64816 0.49583 0.00030163 -0.76118 -0.00046305 -0.26536 -0.00016143 608.3309513187918 48.766 0.26986 43.37 43.318 43.588 -5.3961 22 15 2 0 0 0 0.018061 1 30416 30416 65.474 34.837 1 25323000 66863 1447 44499 45501 78068 78068 249 0.04942620559381794 TYIQKIFRM 9 Unmodified _TYIQKIFRM_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5582885742188 3 400.55836 1198.65325 -0.43281 -0.00017337 -0.64539 -0.00025852 -1.0782 -0.00043188 400.5581421888394 55.732 0.28535 55.663 55.497 55.782 -0.068741 22 14 2 0 0 0 0.047196 1 30293 30293 57.722 42.474 1 8948900 66864 1447 44499 45502 78069 78069 0.06186924421990625 TYIQKIFRM 9 Unmodified _TYIQKIFRM_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5589904785156 3 400.55836 1198.65325 1.2817 0.00051341 -0.67035 -0.00026851 0.61138 0.00024489 400.55832757317086 86.798 0.67636 80.622 80.322 80.999 -6.1757 106 36 4 0 0 0 0.031062 4 57198 57073;57198;57316;57438 57.722 49.566 1 77169000 66865 1447 44499 45502 78070;78071;78072;78073 78071 0.06186924421990625 TYIQKIFRM 9 Unmodified _TYIQKIFRM_ 0 0 0 ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF ENSG00000087008|ENST00000356406|ACOX3 ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3342895507812 2 600.333901 1198.65325 0.51037 0.00030639 -1.6635 -0.00099863 -1.1531 -0.00069224 600.3346987581393 86.84 0.58452 80.664 80.379 80.963 -6.1757 77 31 3 0 0 0 0.010301 1 57303 57303 79.596 45.494 1 24943000 66866 1447 44499 45502 78074 78074 0.06186924421990625 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-4|INPP5B nc|ENSG00000204084|P32019-4|INPP5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3145751953125 2 618.314023 1234.61349 0.80648 0.00049866 -0.17603 -0.00010884 0.63045 0.00038982 618.3140688269486 94.845 0.35811 88.669 88.496 88.854 -6.1757 38 20 2 0 0 0 0.024189 1 62827 62827 74.929 48.661 1 8619500 66867 10240 44500 45503 78075 78075 0.005571207429284186 TYIQNFRFF 9 Unmodified _TYIQNFRFF_ 0 0 0 nc|ENSG00000204084|P32019-4|INPP5B;ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B nc|ENSG00000204084|P32019-4|INPP5B nc|ENSG00000204084|P32019-4|INPP5B MSMS AL20221201_MKP_PDAC_01 4 618.31396484375 2 618.314023 1234.61349 NaN NaN NaN NaN NaN NaN NaN 95.054 1 88.878 88.378 89.378 -6.1757 0 0 0 0.23566 1 62961 62961 37.974 26.479 1 66868 10240 44500 45503 78076 78076 0.005571207429284186 TYIRCPSFF 9 Carbamidomethyl (C) _TYIRC(Carbamidomethyl (C))PSFF_ TYIRC(1)PSFF TYIRC(40)PSFF 0 1 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MSMS AL20221201_MKP_PDAC_01 4 595.7861328125 2 595.786784 1189.55902 NaN NaN NaN NaN NaN NaN NaN 69.018 1 62.842 62.342 63.342 -6.1757 0 0 0 0.12101 1 45059 45059 40.239 11.158 1 66869 4818 44501 45504 78077 78077 491 -0.02818214400144825 TYIRDFQKI 9 Unmodified _TYIRDFQKI_ 0 0 0 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2206726074219 3 395.220513 1182.63971 0.40706 0.00016088 -0.59068 -0.00023345 -0.18362 -7.2571E-05 395.2201668166138 40.909 0.31873 40.606 40.502 40.82 -0.30304 19 15 2 0 0 0 0.20507 1 21653 21653 22.658 13.114 1 2744800 66870 6436 44502 45505 78078 78078 0.05569389914421663 TYIRDFQKI 9 Unmodified _TYIRDFQKI_ 0 0 0 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2218322753906 3 395.220513 1182.63971 0.53294 0.00021063 -0.23767 -9.3931E-05 0.29527 0.0001167 395.2205344822449 45.296 0.21153 40.341 40.239 40.45 -4.9549 22 14 2 0 0 0 0.13231 1 27766 27766 29.841 6.0395 1 12504000 66871 6436 44502 45505 78079 78079 0.05569389914421663 TYIREKFQM 9 Unmodified _TYIREKFQM_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3159790039062 2 608.313166 1214.61178 1.039 0.00063204 -3.661 -0.0022271 -2.622 -0.001595 608.3116200293131 66.576 0.22803 66.586 66.417 66.645 0.0095673 19 10 3 0 0 0 0.20428 1 36540 36540 22.736 3.4793 1 4476400 + 66872 21041 44503 45506 78080 78080 0.013057436626695562 TYIRRSML 8 Unmodified _TYIRRSML_ 0 0 0 nc|ENSG00000164219|P53609-2|PGGT1B nc|ENSG00000164219|P53609-2|PGGT1B nc|ENSG00000164219|P53609-2|PGGT1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.289794921875 2 520.289494 1038.56443 0.49995 0.00026012 -1.5605 -0.00081192 -1.0606 -0.0005518 520.2881869951024 46.752 0.56396 46.752 46.294 46.858 0 38 26 2 0 0 0 0.70294 1 25539 25539 16.942 2.104 1 24712000 66873 16336 44504 45507 78081 78081 0.046695091823494295 TYISAIRERF 10 Unmodified _TYISAIRERF_ 0 0 0 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.2313842773438 3 419.2313 1254.67207 0.34166 0.00014323 0.18203 7.6311E-05 0.52369 0.00021955 419.56590901641596 48.657 0.20716 48.285 48.143 48.35 -0.37172 16 11 2 0 0 0 0.38026 1 26074 26074 22.775 7.2365 1 6739000 66874 6842 44505 45508 78082 78082 0.05492177317387359 TYISAIRERF 10 Unmodified _TYISAIRERF_ 0 0 0 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2315063476562 3 419.2313 1254.67207 0.29295 0.00012281 -0.095074 -3.9858E-05 0.19788 8.2957E-05 419.2312016328221 48.394 0.29691 48.35 48.158 48.455 -0.04369 45 14 4 0 0 0 0.30673 2 26039 26039;26154 27.088 5.2889 1 25311000 66875 6842 44505 45508 78083;78084 78083 0.05492177317387359 TYISAIRERF 10 Unmodified _TYISAIRERF_ 0 0 0 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 ENSG00000162231|ENST00000294172|NXF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3433227539062 2 628.343312 1254.67207 0.47286 0.00029712 -0.49065 -0.0003083 -0.017792 -1.118E-05 628.3427496917476 48.394 0.23543 48.35 48.198 48.434 -0.04369 23 11 3 0 0 0 0.1989 1 26073 26073 32.037 10.501 1 7895700 66876 6842 44505 45508 78085 78085 0.05492177317387359 TYISRSFQV 9 Unmodified _TYISRSFQV_ 0 0 0 ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B ENSG00000154127|ENST00000284273|UBASH3B MSMS AL20221201_MKP_PDAC_01 4 550.7903442382812 2 550.790381 1099.56621 NaN NaN NaN NaN NaN NaN NaN 52.322 1 46.588 46.088 47.088 -5.7345 0 0 0 0.013541 1 33026 33026 87.258 51.131 1 66877 6298 44506 45509 78086 78086 0.02040841471944077 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7971801757812 2 584.797872 1167.58119 0.48805 0.00028541 -0.36067 -0.00021092 0.12738 7.4494E-05 584.7976580043935 57.307 0.3076 57.307 57.111 57.419 0 45 13 4 0 0 0 0.21643 1 31846 31846 21.537 7.6309 1 30559000 66878 4107 44507 45510 78087 78087 0.004102885493011854 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7972412109375 2 584.797872 1167.58119 1.1116 0.00065006 -0.36294 -0.00021225 0.74865 0.00043781 584.7974377230842 57.543 0.25458 57.477 57.339 57.593 -0.066036 26 12 3 0 0 0 0.18144 1 31346 31346 24.991 4.5373 1 3931100 66879 4107 44507 45510 78088 78088 0.004102885493011854 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7977294921875 2 584.797872 1167.58119 0.88582 0.00051803 -0.065898 -3.8537E-05 0.81993 0.00047949 584.7976868013003 63.461 0.95471 57.286 56.98 57.935 -6.1757 114 53 3 0 0 0 0.012228 4 41262 40852;40989;41131;41262 74.2 41.57 1 130330000 66880 4107 44507 45510 78089;78090;78091;78092 78092 0.004102885493011854 TYISWKEEL 9 Unmodified _TYISWKEEL_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 584.797872 1167.58119 0.48805 0.00028541 -0.36067 -0.00021092 0.12738 7.4494E-05 584.7976580043935 57.307 0.3076 57.307 57.111 57.419 0 -0.049678 -0.00015153 NaN 74.2 45 13 4 NaN NaN NaN NaN 0 NaN NaN 0 30559000 66881 4107 44507 45510 0.004102885493011854 TYITNQAAVYF 11 Unmodified _TYITNQAAVYF_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.822021484375 2 645.821878 1289.6292 0.23386 0.00015103 -0.13582 -8.7713E-05 0.098045 6.3319E-05 645.8220098338015 70.81 0.30252 70.333 70.202 70.505 -0.47735 25 13 2 0 0 0 0.59689 1 38723 38723 11.495 7.5503 1 1523600 66882 7765 44508 45511 78093 78093 -0.004026375306921182 TYITNQAAVYF 11 Unmodified _TYITNQAAVYF_ 0 0 0 nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1;ENST00000394563.4_1_X:85340081-85340624:-|nuORF nc|ENSG00000168439|P31948-3|STIP1 nc|ENSG00000168439|P31948-3|STIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.8215942382812 2 645.821878 1289.6292 0.28379 0.00018328 -0.2398 -0.00015487 0.043989 2.8409E-05 645.8213599822436 78.326 0.42174 72.151 71.935 72.356 -6.1757 40 24 2 0 0 0 5.0416E-09 2 51278 51155;51278 114.2 74.252 1 30250000 66883 7765 44508 45511 78094;78095 78095 -0.004026375306921182 TYITSVSRL 9 Unmodified _TYITSVSRL_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2929077148438 2 520.292756 1038.57096 0.56505 0.00029399 0.064384 3.3499E-05 0.62943 0.00032749 520.2927703543173 46.981 0.39216 46.644 46.462 46.854 -0.33664 37 19 2 0 0 0 0.021948 1 25197 25197 61.602 32.52 1 128290000 66884 7249 44509 45512 78096 78096 0.053217256147036096 TYITSVSRL 9 Unmodified _TYITSVSRL_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.293212890625 2 520.292756 1038.57096 1.3055 0.00067926 1.042 0.00054215 2.3475 0.0012214 520.2926480795675 46.705 0.36907 46.672 46.529 46.898 -0.033421 45 17 4 0 0 0 0.01958 1 25124 25124 63.961 27.833 1 19540000 66885 7249 44509 45512 78097 78097 0.053217256147036096 TYITSVSRL 9 Unmodified _TYITSVSRL_ 0 0 0 ENSG00000164823|ENST00000451899|OSGIN2;nc|ENSG00000164823|Q9Y236|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 ENSG00000164823|ENST00000451899|OSGIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.29345703125 2 520.292756 1038.57096 0.93482 0.00048638 0.11066 5.7578E-05 1.0455 0.00054396 520.2927967073196 52.522 0.52985 46.787 46.53 47.06 -5.7345 69 29 4 0 0 0 0.008513 3 33148 33030;33148;33274 99.755 47.487 1 635540000 66886 7249 44509 45512 78098;78099;78100 78099 0.053217256147036096 TYIWKNNFHEK 11 Unmodified _TYIWKNNFHEK_ 0 0 0 ENSG00000170961|ENST00000303924|HAS2 ENSG00000170961|ENST00000303924|HAS2 ENSG00000170961|ENST00000303924|HAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.9164123535156 3 493.917493 1478.73065 -0.46439 -0.00022937 -1.6566 -0.00081823 -2.121 -0.0010476 494.25120138980793 28.803 0.20007 28.803 28.723 28.923 0 21 9 3 0 0 0 0.71341 1 14916 14916 1.2148 0.10508 1 2031900 66887 8053 44510 45513 78101 78101 0.010432338918917594 TYIYAGCQDC 10 Unmodified _TYIYAGCQDC_ 0 0 0 REV__ENST00000489332.1_1_X:70467340-70473105:-|nuORF REV__ENST00000489332.1_1_X:70467340-70473105:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.4842224121094 3 379.48442 1135.43143 0.047038 1.785E-05 0.37871 0.00014372 0.42575 0.00016157 379.48437495025945 60.295 0.23676 59.804 59.69 59.927 -0.49079 20 11 2 0 0 0 0.69917 1 32811 32811 3.0723 0.077021 1 3998400 + 66888 20867 44511 45514 78102 78102 -0.13086723056449046 TYKAAHIFF 9 Unmodified _TYKAAHIFF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000599648.1_1_19:7705628-7705700:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5311889648438 3 366.530798 1096.57057 1.1973 0.00043885 0.030656 1.1236E-05 1.228 0.00045008 366.5307485039269 50.351 0.36828 50.302 50.127 50.495 -0.048828 53 17 4 0 0 0 0.078314 3 27188 27181;27188;27284 29.437 15.032 1 15824000 66889 1199 44512 45515 78103;78104;78105 78104 0.026143506855078158 TYKAAHIFF 9 Unmodified _TYKAAHIFF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000599648.1_1_19:7705628-7705700:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.292236328125 2 549.292559 1096.57057 1.2788 0.00070242 0.56315 0.00030934 1.8419 0.0010118 549.2927893865619 50.348 0.3278 50.299 50.148 50.475 -0.048828 35 15 3 0 0 0 0.018301 1 27205 27205 65.235 38.894 1 5614600 66890 1199 44512 45515 78106 78106 0.026143506855078158 TYKAAHIFF 9 Unmodified _TYKAAHIFF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000599648.1_1_19:7705628-7705700:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5314636230469 3 366.530798 1096.57057 1.5552 0.00057004 -0.12641 -4.6333E-05 1.4288 0.00052371 366.5307356075401 54.863 0.35072 48.998 48.835 49.186 -5.8653 29 21 2 0 0 0 0.039985 2 34827 34827;34972 38.615 31.006 1 13861000 66891 1199 44512 45515 78107;78108 78107 0.026143506855078158 TYKAAHIFF 9 Unmodified _TYKAAHIFF_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000599648.1_1_19:7705628-7705700:+|nuORF nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 366.530798 1096.57057 0.73277 0.00026858 0.16776 6.1488E-05 0.90052 0.00033007 366.53097629444056 50.701 0.20194 50.288 50.192 50.394 -0.41351 -0.0073545 0.00011722 NaN 29.437 17 9 3 NaN NaN NaN NaN 0 NaN NaN 0 963690 66892 1199 44512 45515 0.026143506855078158 TYKAFNTFI 9 Unmodified _TYKAFNTFI_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.790283203125 2 552.78985 1103.56515 0.35874 0.00019831 -0.79712 -0.00044064 -0.43838 -0.00024233 552.7896392592862 61.447 0.32229 61.414 61.25 61.572 -0.032787 41 15 3 0 0 0 0.02676 2 33501 33501;33600 61.602 27.499 1 19847000 66893 713 44513 45516 78109;78110 78109 0.01750627103047009 TYKALNTFI 9 Unmodified _TYKALNTFI_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7977905273438 2 535.797675 1069.5808 0.1866 9.9978E-05 0.042618 2.2834E-05 0.22921 0.00012281 535.7977267360421 58.292 0.59421 57.801 57.618 58.212 -0.49079 79 28 5 0 0 0 0.013609 1 31667 31667 70.332 36.23 1 29066000 66894 2242 44514 45517 78111 78111 0.04878913620086678 TYKALNTFI 9 Unmodified _TYKALNTFI_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7977905273438 2 535.797675 1069.5808 0.81349 0.00043586 -1.533 -0.00082137 -0.7195 -0.00038551 535.7968604479264 57.948 0.5171 57.882 57.593 58.111 -0.066036 66 25 4 0 0 0 0.047788 1 31520 31520 45.7 18.816 1 39992000 66895 2242 44514 45517 78112 78112 0.04878913620086678 TYKALNTFI 9 Unmodified _TYKALNTFI_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7985229492188 2 535.797675 1069.5808 0.95303 0.00051063 -1.8329 -0.00098204 -0.87982 -0.0004714 535.7960898718346 63.587 0.84009 57.411 57.115 57.955 -6.1757 113 47 4 0 0 0 0.094149 3 41117 40979;41117;41245 34.402 13.948 1 152270000 66896 2242 44514 45517 78113;78114;78115 78114 0.04878913620086678 TYKDDYCEL 9 Unmodified _TYKDDYCEL_ 0 0 0 REV__ENSG00000162779|ENST00000367618|AXDND1 REV__ENSG00000162779|ENST00000367618|AXDND1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2731323242188 2 575.242072 1148.46959 0.11294 6.4967E-05 1.5274 0.00087864 1.6404 0.0009436 575.74503739779 60.469 0.22238 59.98 59.828 60.05 -0.48932 19 10 3 0 0 0 0.20528 1 32885 32885 8.5933 0 1 3386000 + 66897 21692 44515 45518 78116 78116 -0.09870513870146169 TYKDEGNDYF 10 Unmodified _TYKDEGNDYF_ 0 0 0 ENSG00000243725|ENST00000371281|TTC4;ENST00000486621.1_1_1:55181548-55183334:+|nuORF;ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENSG00000243725|ENST00000371281|TTC4;ENST00000427137.1_1_7:46039864-46040332:-|nuORF ENST00000427137.1_1_7:46039864-46040332:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.2626342773438 2 626.26185 1250.50915 -0.016992 -1.0641E-05 -0.024124 -1.5108E-05 -0.041116 -2.5749E-05 626.2619298286074 35.573 0.23477 35.573 35.479 35.713 0 19 11 3 0 0 0 0.28276 1 18826 18826 28.495 8.0409 1 3498700 66898 13189;10714 44516 45519 78117 78117 -0.10608670595092917 TYKDSFHFDIR 11 Unmodified _TYKDSFHFDIR_ 0 0 0 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.927734375 4 357.928117 1427.68336 -0.58191 -0.00020828 0.2815 0.00010076 -0.30041 -0.00010753 357.92825018535217 15.209 0.084385 15.195 15.157 15.241 -0.014067 52 25 3 0 0 0 0.73451 1 7447 7447 1.0136 0 1 1009900 66899 3761 44517 45520 78118 78118 -0.013370453790912507 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2843627929688 2 582.284597 1162.55464 0.35655 0.00020762 -0.35518 -0.00020681 0.0013765 8.015E-07 582.2843690324974 67.495 0.38121 67.495 67.294 67.675 0 56 17 4 0 0 0 0.025842 2 37669 37569;37669 57.722 25.416 1 24388000 66900 10766 44518 45521 78119;78120 78120 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2841186523438 2 582.284597 1162.55464 0.61097 0.00035576 -1.1366 -0.00066182 -0.52563 -0.00030607 582.2838878523029 67.988 0.50795 67.506 67.275 67.783 -0.48218 70 23 4 0 0 0 0.013609 2 37198 37096;37198 70.332 42.703 1 39503000 66901 10766 44518 45521 78121;78122 78122 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2862548828125 2 582.284597 1162.55464 0.85519 0.00049796 1.3489 0.00078545 2.2041 0.0012834 582.2855473118099 77.775 0.29632 71.599 71.498 71.794 -6.1757 27 16 2 0 0 0 0.013609 1 50849 50849 70.332 44.933 1 9332800 66902 10766 44518 45521 78123 78123 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.285400390625 2 582.284597 1162.55464 0.61918 0.00036054 -0.064975 -3.7834E-05 0.5542 0.0003227 582.284923451152 78.589 1.2962 72.413 72.008 73.304 -6.1757 162 76 3 0 0 0 0.025842 5 51655 51269;51393;51521;51655;51785 57.722 34.986 1 37773000 66903 10766 44518 45521 78124;78125;78126;78127;78128 78127 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 582.285888671875 2 582.284597 1162.55464 NaN NaN NaN NaN NaN NaN NaN 77.262 1 71.086 70.586 71.586 -6.1757 0 0 0 0.13831 1 50534 50534 38.176 16.429 1 66904 10766 44518 45521 78129 78129 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 582.2862548828125 2 582.284597 1162.55464 NaN NaN NaN NaN NaN NaN NaN 77.957 1 71.782 71.282 72.282 -6.1757 0 0 0 0.026638 1 51007 51007 70.332 39.695 1 66905 10766 44518 45521 78130 78130 -0.02013400342048044 TYKDYVDLF 9 Unmodified _TYKDYVDLF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 582.284912109375 2 582.284597 1162.55464 NaN NaN NaN NaN NaN NaN NaN 78.152 1 71.977 71.477 72.477 -6.1757 0 0 0 0.090869 1 51144 51144 45.74 21.719 1 66906 10766 44518 45521 78131 78131 -0.02013400342048044 TYKEGYNVY 9 Unmodified _TYKEGYNVY_ 0 0 0 nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2 nc|ENSG00000120251|P42262-4|GRIA2 nc|ENSG00000120251|P42262-4|GRIA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7671508789062 2 568.766571 1135.51859 1.1907 0.0006772 -1.8162 -0.001033 -0.6255 -0.00035576 568.7661485218705 32.356 0.28779 28.499 28.383 28.67 -3.8562 39 16 3 0 0 0 0.23158 1 18439 18439 20.454 8.8133 1 12694000 66907 3501 44519 45522 78132 78132 -0.04374857518905628 TYKEGYNVY 9 Unmodified _TYKEGYNVY_ 0 0 0 nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2 nc|ENSG00000120251|P42262-4|GRIA2 nc|ENSG00000120251|P42262-4|GRIA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.766571 1135.51859 -0.35028 -0.00019923 -1.3915 -0.00079143 -1.7418 -0.00099066 568.7659258401662 28.65 0.20294 28.65 28.558 28.761 0 0.075557 0.00023363 NaN 20.454 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2827000 66908 3501 44519 45522 -0.04374857518905628 TYKEKHCQF 9 Unmodified _TYKEKHCQF_ 0 0 0 REV__ENST00000438101.1_1_X:49431298-49432372:-|nuORF REV__ENST00000438101.1_1_X:49431298-49432372:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2813110351562 2 592.281866 1182.54918 0.14245 8.4372E-05 -0.39981 -0.0002368 -0.25736 -0.00015243 592.2815358227793 58.43 0.54437 58.43 58.154 58.699 0 66 21 4 0 0 0 0.54444 1 32677 32677 4.756 0 1 15099000 + 66909 27047 44520 45523 78133 78133 -0.034794024055372574 TYKERNNF 8 Unmodified _TYKERNNF_ 0 0 0 REV__nc|ENSG00000036257|Q13618-3|CUL3 REV__nc|ENSG00000036257|Q13618-3|CUL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8458557128906 3 357.845446 1070.51451 0.1022 3.6571E-05 0.24072 8.6139E-05 0.34291 0.00012271 357.8455896222564 35.904 0.15681 35.904 35.836 35.993 0 12 7 2 0 0 0 0.79669 1 19032 19032 6.2058 0.47393 1 1829100 + 66910 17167 44521 45524 78134 78134 -0.01792902221973236 TYKFAEGKLF 10 Unmodified _TYKFAEGKLF_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3212280273438 2 602.324057 1202.63356 0.2811 0.00016931 -3.4387 -0.0020712 -3.1576 -0.0019019 602.3219043345591 51.056 0.24083 50.643 50.498 50.738 -0.41351 17 11 2 0 0 0 0.66569 1 27536 27536 6.7232 0.99131 1 1823700 66911 5013 44522 45525 78135 78135 0.040348716828930264 TYKFNFNKL 9 Unmodified _TYKFNFNKL_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3 nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2135620117188 3 392.213358 1173.61824 1.1688 0.00045843 -0.23229 -9.1108E-05 0.93654 0.00036733 392.21317184322845 50 0.36408 49.951 49.784 50.148 -0.048824 61 17 5 0 0 0 0.047196 1 27016 27016 41.956 31.057 1 23864000 66912 2358 44523 45526 78136 78136 0.038380048857106885 TYKFNFNKL 9 Unmodified _TYKFNFNKL_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3 nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8157348632812 2 587.816399 1173.61824 NaN NaN NaN NaN NaN NaN NaN 50.018 1 49.969 49.469 50.469 -0.048824 0 0 0 0.02218 1 27044 27044 75.761 41.658 1 66913 2358 44523 45526 78137 78137 0.038380048857106885 TYKFNFNKL 9 Unmodified _TYKFNFNKL_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3 nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2140502929688 3 392.213358 1173.61824 1.0265 0.00040262 0.55877 0.00021916 1.5853 0.00062178 392.2136564017765 54.537 0.39642 48.672 48.485 48.881 -5.8653 60 24 3 0 0 0 0.010818 2 34676 34536;34676 61.602 41.976 1 46003000 66914 2358 44523 45526 78138;78139 78139 0.038380048857106885 TYKFNFNKL 9 Unmodified _TYKFNFNKL_ 0 0 0 nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000117036|ENST00000368192|ETV3 nc|ENSG00000105722|P50548-2|ERF nc|ENSG00000105722|P50548-2|ERF MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8171997070312 2 587.816399 1173.61824 0.64266 0.00037777 -1.5179 -0.00089226 -0.87525 -0.00051449 587.815365851012 54.559 0.2471 48.694 48.572 48.819 -5.8653 20 14 2 0 0 0 0.010301 1 34622 34622 79.596 55.576 1 13297000 66915 2358 44523 45526 78140 78140 0.038380048857106885 TYKFSHDHL 9 Unmodified _TYKFSHDHL_ 0 0 0 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1894836425781 3 383.189212 1146.54581 -0.35708 -0.00013683 0.65135 0.00024959 0.29428 0.00011276 383.189341798191 23.678 0.22224 23.678 23.548 23.771 0 16 11 2 0 0 0 0.39863 1 12086 12086 12.241 6.5088 1 1033500 66916 7724 44524 45527 78141 78141 -0.02160329187836396 TYKFSHDHL 9 Unmodified _TYKFSHDHL_ 0 0 0 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1900634765625 3 383.189212 1146.54581 0.66806 0.00025599 -0.14418 -5.5248E-05 0.52388 0.00020075 383.1895109736598 26.226 0.25469 23.275 23.15 23.405 -2.9511 20 14 2 0 0 0 0.095405 1 14424 14424 31.268 19.774 1 8933700 66917 7724 44524 45527 78142 78142 -0.02160329187836396 TYKIKIHTF 9 Unmodified _TYKIKIHTF_ 0 0 0 nc|ENSG00000066651|Q7Z4G4-2|TRMT11;ENSG00000066651|ENST00000334379|TRMT11;nc|ENSG00000066651|Q7Z4G4-3|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 nc|ENSG00000066651|Q7Z4G4-2|TRMT11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2246704101562 3 384.225486 1149.65463 -0.1229 -4.7223E-05 -1.927 -0.00074039 -2.0499 -0.00078762 384.2245381420289 35.559 0.15095 35.584 35.494 35.645 0.024971 18 6 3 0 0 0 0.11005 1 18811 18811 32.037 22.494 1 6385200 66918 941 44525 45528 78143 78143 0.08578881782409553 TYKKIEDCL 9 Unmodified _TYKKIEDCL_ 0 0 0 REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2927856445312 2 556.78645 1111.55835 0.82504 0.00045937 3.2771 0.0018247 4.1022 0.002284 556.7859980933656 73.604 0.40179 73.604 73.454 73.856 0 38 17 3 0 0 0 0.49272 1 40950 40950 7.9102 2.1783 1 680950 + 66919 26861 44526 45529 78144 78144 0.007029461601632647 TYKKIEDCL 9 Unmodified _TYKKIEDCL_ 0 0 0 REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF REV__ENST00000422717.1_1_9:32333457-32333676:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2927856445312 2 556.78645 1111.55835 0.82504 0.00045937 3.2771 0.0018247 4.1022 0.002284 556.7859980933656 73.604 0.40179 73.604 73.454 73.856 0 38 17 3 0 0 0 0.20727 1 40950 40950 7.9102 2.6795 1 680950 + 66920 26861 44526 45529 78145 78145 0.007029461601632647 TYKKSKYIF 9 Unmodified _TYKKSKYIF_ 0 0 0 REV__ENST00000520572.1_1_8:143788537-143788795:-|nuORF REV__ENST00000520572.1_1_8:143788537-143788795:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.3359375 2 589.334424 1176.6543 NaN NaN NaN NaN NaN NaN NaN 77.317 1 76.835 76.335 77.335 -0.4826 0 0 0 0.7243 1 42327 42327 8.5933 1.8701 1 + 66921 28279 44527 45530 78146 78146 0.073034620625549 TYKMTKFHL 9 Unmodified _TYKMTKFHL_ 0 0 0 REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8128051757812 2 584.812802 1167.61105 0.96463 0.00056413 -0.13539 -7.918E-05 0.82923 0.00048495 584.8126099992272 87.507 0.41955 81.331 81.112 81.531 -6.1757 54 22 3 0 0 0 0.19127 1 57659 57659 24.021 4.5816 1 29920000 + 66922 24996 44528 45531 78147 78147 0.03394949013659243 TYKMTKFHL 9 Unmodified _TYKMTKFHL_ 0 0 0 REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 389.8945617675781 3 390.21096 1167.61105 1.3309 0.00051932 -1.3881 -0.00054164 -0.057197 -2.2319E-05 390.2104351194545 87.544 0.51308 81.368 80.999 81.512 -6.1757 65 27 3 0 0 0 0.21493 1 57641 57641 4.897 1.9018 1 68959000 + 66923 24996 44528 45531 78148 78148 0.03394949013659243 TYKMTKFHL 9 Unmodified _TYKMTKFHL_ 0 0 0 REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF REV__ENST00000261530.11_1_14:76676509-76676761:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.3375244140625 2 584.812802 1167.61105 0.96463 0.00056413 -0.13539 -7.918E-05 0.82923 0.00048495 584.8126099992272 87.507 0.41955 81.331 81.112 81.531 -6.1757 54 22 3 0 0 0 0.20399 1 57756 57756 6.7232 0 1 29920000 + 66924 24996 44528 45531 78149 78149 0.03394949013659243 TYKNFFYLI 9 Unmodified _TYKNFFYLI_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.822021484375 2 604.82115 1207.62775 -0.075835 -4.5866E-05 0.46823 0.0002832 0.3924 0.00023733 604.8216291335852 87.735 0.30291 87.788 87.586 87.888 0.053352 20 12 3 0 0 0 0.0094097 1 48759 48759 82.529 30.9 1 21613000 66925 445 44529 45532 78150 78150 0.032237731712484674 TYKNFFYLI 9 Unmodified _TYKNFFYLI_ 0 0 0 ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A ENSG00000011405|ENST00000691414|PIK3C2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.8209838867188 2 604.82115 1207.62775 0.51744 0.00031296 -1.1721 -0.00070889 -0.65464 -0.00039594 604.8190867036485 99.293 0.21062 93.117 92.99 93.201 -6.1757 25 11 3 0 0 0 0.094149 1 66097 66097 34.402 11.665 1 165850000 66926 445 44529 45532 78151 78151 0.032237731712484674 TYKQRPYTF 9 Unmodified _TYKQRPYTF_ 0 0 0 ARID1A-WDTC1|1|fusion;ARID1A-WDTC1|2|fusion;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;ENSG00000142784|ENST00000319394|WDTC1 ARID1A-WDTC1|1|fusion ARID1A-WDTC1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3135375976562 2 602.31148 1202.60841 0.73933 0.00044531 -2.2641 -0.0013637 -1.5248 -0.00091838 602.31279216397 97.737 0.53935 91.562 91.261 91.8 -6.1757 150 33 6 0 0 0 0.028475 1 64620 64620 56.177 7.8312 1 263060000 66927 36 44530 45533 78152 78152 0.015208168803155786 TYKTLRKLW 9 Unmodified _TYKTLRKLW_ 0 0 0 REV__ENST00000481244.5_1_10:28491134-28569058:-|nuORF REV__ENST00000481244.5_1_10:28491134-28569058:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.8623657226562 2 604.861141 1207.70773 NaN NaN NaN NaN NaN NaN NaN 103.44 1 103.33 102.83 103.83 -0.10458 0 0 0 0.85737 1 56418 56418 0.6015 0.14316 1 + 66928 27690 44531 45534 78153 78153 0.11218259565089284 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7850952148438 2 550.784764 1099.55498 -0.13149 -7.2425E-05 0.15563 8.5721E-05 0.024139 1.3295E-05 550.7847937160649 44.929 0.32695 44.929 44.769 45.095 0 40 16 3 0 0 0 0.030186 2 24415 24415;24524 67.838 42.439 1 123780000 66929 3016 44532 45535 78154;78155 78154 0.009180193778092871 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7855834960938 2 550.784764 1099.55498 NaN NaN NaN NaN NaN NaN NaN 44.923 1 44.901 44.401 45.401 -0.022064 0 0 0 0.326 1 24114 24114 31.268 13.133 1 66930 3016 44532 45535 78156 78156 0.009180193778092871 TYKVISNEF 9 Unmodified _TYKVISNEF_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32434669-32435362:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7847290039062 2 550.784764 1099.55498 1.0238 0.00056388 -1.226 -0.00067528 -0.20226 -0.0001114 550.7845328880239 50.692 0.50613 45.043 44.79 45.297 -5.649 87 31 4 0 0 0 0.010362 2 31839 31709;31839 96.367 66.142 1 241710000 66931 3016 44532 45535 78157;78158 78158 0.009180193778092871 TYKWNTRIET 10 Unmodified _TYKWNTRIET_ 0 0 0 ENSG00000221855|ENST00000408916|TAS2R41 ENSG00000221855|ENST00000408916|TAS2R41 ENSG00000221855|ENST00000408916|TAS2R41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.8950805664062 3 437.894577 1310.6619 0.057937 2.5371E-05 0.96854 0.00042412 1.0265 0.00044949 437.8952523901658 37.208 0.28591 37.229 37.089 37.375 0.021545 46 12 5 0 0 0 0.5543 1 19708 19708 13.519 2.6197 1 17127000 66932 10554 44533 45536 78159 78159 0.018995695921830702 TYKYLCCQWM 10 Unmodified _TYKYLCCQWM_ 0 0 0 REV__ENST00000324052.10_2_4:113567999-113568038:+|nuORF REV__ENST00000324052.10_2_4:113567999-113568038:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.789794921875 2 669.787612 1337.56067 NaN NaN NaN NaN NaN NaN NaN 60.422 1 60.378 59.878 60.878 -0.04351 0 0 0 1.0029 1 32954 32954 0.35063 0.043601 1 + 66933 25530 44534 45537 78160 78160 -0.09460664698053733 TYKYMIHEDSL 11 Unmodified _TYKYMIHEDSL_ 0 0 0 ENSG00000087116|ENST00000251582|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 ENSG00000087116|ENST00000251582|ADAMTS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 700.33203125 2 700.331753 1398.64895 -0.016145 -1.1307E-05 1.5173 0.0010626 1.5012 0.0010513 700.332817750139 78.669 0.16342 78.669 78.575 78.738 0 10 7 2 0 0 0 0.69316 1 43722 43722 4.897 1.0207 1 246530 66934 1455 44535 45538 78161 78161 -0.034426295821958774 TYLDIFRDF 9 Unmodified _TYLDIFRDF_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.298095703125 2 595.298039 1188.58152 0.49998 0.00029764 0.12445 7.4084E-05 0.62443 0.00037172 595.2982328565986 92.642 0.29893 92.185 92.035 92.334 -0.45741 26 13 3 0 0 0 0.42049 1 50607 50607 11.495 7.5503 1 957260 66935 1094 44536 45539 78162 78162 -0.005222917308628894 TYLDIFRDF 9 Unmodified _TYLDIFRDF_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.299072265625 2 595.298039 1188.58152 1.2012 0.00071509 0.11596 6.9028E-05 1.3172 0.00078412 595.2981646236456 92.108 0.28992 92.138 91.993 92.283 0.030197 15 10 2 0 0 0 0.040683 1 51249 51249 49.554 28.017 1 3008900 66936 1094 44536 45539 78163 78163 -0.005222917308628894 TYLDIFRDF 9 Unmodified _TYLDIFRDF_ 0 0 0 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 ENSG00000072818|ENST00000158762|ACAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2985229492188 2 595.298039 1188.58152 0.083493 4.9703E-05 1.9943 0.0011872 2.0777 0.0012369 595.2989587000861 99.652 0.12523 93.476 93.432 93.558 -6.1757 12 7 2 0 0 0 0.021948 1 66458 66458 61.602 37.581 1 23876000 66937 1094 44536 45539 78164 78164 -0.005222917308628894 TYLDIPLVI 9 Unmodified _TYLDIPLVI_ 0 0 0 nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 nc|ENSG00000170242|Q96K76-2|USP47 nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.8104858398438 2 523.810251 1045.60595 0.22654 0.00011866 0.69893 0.00036611 0.92547 0.00048477 523.8107301963789 100.87 0.080109 100.74 100.69 100.77 -0.13293 4 2 2 0 0 0 0.41742 1 55070 55070 11.64 6.4096 1 935310 66938 7962 44537 45540 78165 78165 0.08496968422650752 TYLDIPLVI 9 Unmodified _TYLDIPLVI_ 0 0 0 nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 nc|ENSG00000170242|Q96K76-2|USP47 nc|ENSG00000170242|Q96K76-2|USP47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.811767578125 2 523.810251 1045.60595 0.90343 0.00047322 1.0795 0.00056547 1.983 0.0010387 523.8107691993094 101.52 0.14298 95.34 95.252 95.395 -6.1757 10 6 2 0 0 0 0.0086179 1 68114 68114 89.427 38.572 1 65860000 66939 7962 44537 45540 78166 78166 0.08496968422650752 TYLDKIKKF 9 Unmodified _TYLDKIKKF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8970336914062 3 385.897258 1154.66995 -0.030596 -1.1807E-05 0.33906 0.00013084 0.30847 0.00011904 385.89761715111837 39.649 0.18782 39.352 39.243 39.431 -0.29716 18 8 3 0 0 0 0.12357 1 20917 20917 30.703 21.159 1 2995200 66940 763 44538 45541 78167 78167 0.09879748579601255 TYLDKIKKF 9 Unmodified _TYLDKIKKF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8975219726562 3 385.897258 1154.66995 0.20318 7.8407E-05 0.40623 0.00015676 0.60941 0.00023517 385.89747291544325 39.301 0.34145 39.313 39.106 39.447 0.011456 50 15 4 0 0 0 0.08907 2 20874 20874;20979 35.612 25.297 1 23468000 66941 763 44538 45541 78168;78169 78168 0.09879748579601255 TYLDKIKKF 9 Unmodified _TYLDKIKKF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3425903320312 2 578.342249 1154.66995 0.55751 0.00032243 0.18378 0.00010629 0.74129 0.00042872 578.3421246961381 39.314 0.1486 39.326 39.196 39.344 0.011456 9 6 2 0 0 0 0.39143 1 20938 20938 18.146 10.857 1 798430 66942 763 44538 45541 78170 78170 0.09879748579601255 TYLDKIKKF 9 Unmodified _TYLDKIKKF_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.897705078125 3 385.897258 1154.66995 0.95493 0.00036851 0.18983 7.3254E-05 1.1448 0.00044176 385.8973422807714 43.966 0.41376 39.202 38.967 39.381 -4.7648 83 26 4 0 0 0 0.026499 2 26806 26677;26806 57.249 34.591 1 82399000 66943 763 44538 45541 78171;78172 78172 0.09879748579601255 TYLDKVENI 9 Unmodified _TYLDKVENI_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7894287109375 2 547.790047 1093.56554 0.39123 0.00021431 -0.1542 -8.4469E-05 0.23703 0.00012984 547.7894171743652 47.203 0.55985 47.203 46.999 47.558 0 88 25 6 0 0 0 0.0039711 2 25758 25758;25860 121.53 45.773 1 753600000 66944 9407 44539 45542 78173;78174 78173 0.022500020322468117 TYLDKVENI 9 Unmodified _TYLDKVENI_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7910766601562 2 547.790047 1093.56554 NaN NaN NaN NaN NaN NaN NaN 47.473 1 47.121 46.621 47.621 -0.3526 0 0 0 0.0080339 1 25450 25450 96.936 39.214 1 66945 9407 44539 45542 78175 78175 0.022500020322468117 TYLDKVENI 9 Unmodified _TYLDKVENI_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7890625 2 547.790047 1093.56554 0.94012 0.00051499 3.5746 0.0019581 4.5148 0.0024731 547.789666350763 47.187 0.37467 47.154 47.016 47.39 -0.033417 51 18 4 0 0 0 0.0081887 1 25385 25385 93.166 39.333 1 8519500 66946 9407 44539 45542 78176 78176 0.022500020322468117 TYLDKVENI 9 Unmodified _TYLDKVENI_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7902221679688 2 547.790047 1093.56554 1.1782 0.00064541 -0.36776 -0.00020146 0.81045 0.00044395 547.7896997468072 54.137 0.65871 48.272 47.964 48.623 -5.8653 169 39 5 0 0 0 0.00052793 3 34261 34122;34261;34404 143.21 67.452 1 1427400000 66947 9407 44539 45542 78177;78178;78179 78178 0.022500020322468117 TYLDNGVVF 9 Unmodified _TYLDNGVVF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.2584228515625 2 514.258382 1026.50221 0.18885 9.7119E-05 0.11416 5.8709E-05 0.30301 0.00015583 514.2583019909418 69.75 0.43 69.75 69.534 69.964 0 64 20 4 0 0 0 0.031062 2 38892 38795;38892 54.774 26.287 1 25746000 66948 7694 44540 45543 78180;78181 78181 -0.009979386849863658 TYLDNGVVF 9 Unmodified _TYLDNGVVF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2586059570312 2 514.258382 1026.50221 0.068684 3.5321E-05 0.22851 0.00011751 0.2972 0.00015284 514.2585607183377 70.272 0.30103 69.793 69.653 69.954 -0.47903 40 13 4 0 0 0 0.042911 2 38387 38387;38495 48.346 22.127 1 10762000 66949 7694 44540 45543 78182;78183 78182 -0.009979386849863658 TYLDNGVVF 9 Unmodified _TYLDNGVVF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2581176757812 2 514.258382 1026.50221 NaN NaN NaN NaN NaN NaN NaN 69.784 1 69.815 69.315 70.315 0.030914 0 0 0 0.33856 1 38376 38376 23.148 10.617 1 66950 7694 44540 45543 78184 78184 -0.009979386849863658 TYLDNGVVF 9 Unmodified _TYLDNGVVF_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2594604492188 2 514.258382 1026.50221 0.75708 0.00038933 0.018216 9.3677E-06 0.77529 0.0003987 514.2584097495728 77.881 0.66486 71.706 71.325 71.99 -6.1757 90 37 3 0 0 0 0.042911 3 50801 50801;50927;51050 48.346 19.859 1 79310000 66951 7694 44540 45543 78185;78186;78187 78185 -0.009979386849863658 TYLDQVKIRF 10 Unmodified _TYLDQVKIRF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2445983886719 3 428.243317 1281.70812 0.34955 0.00014969 2.4032 0.0010292 2.7528 0.0011789 428.24438123389325 61.87 0.25618 61.838 61.65 61.906 -0.032787 30 12 3 0 0 0 0.040614 1 33739 33739 62.869 52.553 1 18658000 66952 4014 44541 45544 78188 78188 0.0785363449426768 TYLDQVKIRF 10 Unmodified _TYLDQVKIRF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2436218261719 3 428.243317 1281.70812 0.82494 0.00035327 -0.053199 -2.2782E-05 0.77174 0.00033049 428.2431087131524 80.745 0.31084 74.569 74.35 74.66 -6.1757 23 16 2 0 0 0 0.1379 1 52935 52935 41.347 34.724 1 8617700 66953 4014 44541 45544 78189 78189 0.0785363449426768 TYLDQVKIRF 10 Unmodified _TYLDQVKIRF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MSMS AL20221201_MKP_PDAC_01 4 428.2432556152344 3 428.243317 1281.70812 NaN NaN NaN NaN NaN NaN NaN 81.164 1 74.988 74.488 75.488 -6.1757 0 0 0 0.13895 1 53262 53262 48.073 39.628 1 66954 4014 44541 45544 78190 78190 0.0785363449426768 TYLDSFKRF 9 Unmodified _TYLDSFKRF_ 0 0 0 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8734741210938 3 392.873113 1175.59751 0.40427 0.00015883 -0.13226 -5.196E-05 0.27201 0.00010687 392.87311760922194 52.18 0.26496 52.121 51.983 52.248 -0.058918 28 12 3 0 0 0 0.036857 1 28245 28245 40.725 22.004 1 6428800 66955 10500 44542 45545 78191 78191 0.01673414506035442 TYLDSFKRF 9 Unmodified _TYLDSFKRF_ 0 0 0 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 ENSG00000214654|ENST00000689072|B3GALT9 MSMS AL20221201_MKP_PDAC_01 4 392.8733215332031 3 392.873113 1175.59751 NaN NaN NaN NaN NaN NaN NaN 58.079 1 52.051 51.551 52.551 -6.0275 0 0 0 0.059498 1 37195 37195 42.312 22.687 1 66956 10500 44542 45545 78192 78192 0.01673414506035442 TYLEAHRIVKM 11 Unmodified _TYLEAHRIVKM_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.5854187011719 3 454.251707 1359.73329 -0.3504 -0.00015917 1.7608 0.00079984 1.4104 0.00064067 454.5865467943465 33.271 0.21484 33.112 33.008 33.223 -0.15918 13 8 2 0 0 0 0.67892 1 17387 17387 6.2344 3.6031 1 980960 66957 7502 44543 45546 78193 78193 0.06781366025188618 TYLEAHRIVKM 11 Unmodified _TYLEAHRIVKM_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2517395019531 3 454.251707 1359.73329 1.2515 0.00056851 -0.39959 -0.00018152 0.85195 0.000387 454.25148190163065 37.796 0.37709 33.428 33.22 33.597 -4.3689 68 22 4 0 0 0 0.060768 3 22138 22138;22204;22257 48.561 42.327 1 57555000 66958 7502 44543 45546 78194;78195;78196 78194 0.06781366025188618 TYLEAHRIVKM 11 Unmodified _TYLEAHRIVKM_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 454.251707 1359.73329 0.30769 0.00013977 2.0858 0.00094748 2.3935 0.0010872 454.58678991016546 33.086 0.18987 33.116 33.019 33.208 0.029743 -0.10268 0.002507 NaN 48.561 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1539100 66959 7502 44543 45546 0.06781366025188618 TYLEAHRIVKM 11 Oxidation (M) _TYLEAHRIVKM(Oxidation (M))_ TYLEAHRIVKM(1) TYLEAHRIVKM(46) 0 0 1 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.5831909179688 3 459.583345 1375.72821 0.48323 0.00022209 0.055558 2.5533E-05 0.53879 0.00024762 459.58333980882753 27.378 0.53559 24.341 24.199 24.734 -3.0365 46 26 2 0 0 0 0.074411 1 15157 15157 45.603 28.554 1 25457000 66960 7502 44543 45547 78197 78197 1288 0.05537062162557049 TYLEFRSFQA 10 Unmodified _TYLEFRSFQA_ 0 0 0 nc|ENSG00000171777|Q8TDF6-6|RASGRP4;nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-5|RASGRP4;nc|ENSG00000171777|Q8TDF6-9|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4;ENST00000588404.5_1_19:38907704-38910742:-|nuORF;ENST00000592322.5_1_19:38901850-38916815:-|nuORF nc|ENSG00000171777|Q8TDF6-6|RASGRP4;ENST00000592322.5_1_19:38901850-38916815:-|nuORF nc|ENSG00000171777|Q8TDF6-6|RASGRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.3148193359375 2 631.31422 1260.61389 0.41128 0.00025965 0.54003 0.00034093 0.9513 0.00060057 631.3147463092913 54.823 0.23619 54.756 54.644 54.88 -0.066936 20 11 2 0 0 0 0.29752 1 29765 29765 27.629 0 1 6867500 66961 8138;15718 44544 45548 78198 78198 -0.005995043278517187 TYLEGECLELL 11 Carbamidomethyl (C) _TYLEGEC(Carbamidomethyl (C))LELL_ TYLEGEC(1)LELL TYLEGEC(100)LELL 0 1 0 nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F nc|ENSG00000204642|P30511|HLA-F nc|ENSG00000204642|P30511|HLA-F MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.3261108398438 2 670.326136 1338.63772 -0.02371 -1.5893E-05 -0.066795 -4.4775E-05 -0.090505 -6.0668E-05 670.3262537071872 93.054 0.80231 86.879 86.431 87.233 -6.1757 161 55 4 0 0 0 2.9767E-06 5 61808 61286;61413;61544;61674;61808 99.799 79.384 1 130530000 66962 10315 44545 45549 78199;78200;78201;78202;78203 78203 932 -0.01805451676341363 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2213134765625 3 360.221742 1077.6434 -0.093185 -3.3567E-05 0.46365 0.00016702 0.37047 0.00013345 360.2218100086355 45.412 0.31651 45.412 45.269 45.586 0 46 17 4 0 0 0 0.047194 2 24716 24716;24834 46.022 22.221 1 77501000 66963 9567 44546 45550 78204;78205 78204 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.2218017578125 3 360.221742 1077.6434 0.019796 7.1311E-06 0.11656 4.1988E-05 0.13636 4.9119E-05 360.2217331498521 45.57 0.30708 45.246 45.103 45.41 -0.32425 57 16 5 0 0 0 0.076472 2 24413 24302;24413 38.615 14.825 1 383330000 66964 9567 44546 45550 78206;78207 78207 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8289184570312 2 539.828975 1077.6434 -0.10732 -5.7933E-05 -0.10817 -5.8395E-05 -0.21549 -0.00011633 539.8288432091728 45.587 0.2905 45.262 45.103 45.393 -0.32425 48 15 4 0 0 0 0.01085 1 24308 24308 75.761 46.679 1 291250000 66965 9567 44546 45550 78208 78208 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.2220764160156 3 360.221742 1077.6434 -0.04903 -1.7662E-05 0.83253 0.0002999 0.7835 0.00028223 360.2219853016665 45.322 0.26831 45.294 45.153 45.421 -0.028011 38 13 4 0 0 0 0.069655 2 24415 24308;24415 40.239 13.192 1 86229000 66966 9567 44546 45550 78209;78210 78210 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8292236328125 2 539.828975 1077.6434 0.03573 1.9288E-05 -0.02279 -1.2303E-05 0.01294 6.9854E-06 539.8288480773497 45.31 0.27014 45.282 45.169 45.439 -0.028015 31 13 3 0 0 0 0.030212 1 24346 24346 51.63 16.698 1 42687000 66967 9567 44546 45550 78211 78211 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2220764160156 3 360.221742 1077.6434 1.7434 0.00062801 -0.33844 -0.00012191 1.405 0.0005061 360.22155686108687 50.527 0.7683 44.988 44.695 45.464 -5.5391 165 47 5 0 0 0 0.040733 4 31816 31546;31685;31816;31956 49.527 18.259 1 1593299999.9999998 66968 9567 44546 45550 78212;78213;78214;78215 78214 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8287353515625 2 539.828975 1077.6434 0.9334 0.00050388 -0.27695 -0.00014951 0.65645 0.00035437 539.8287802480091 50.548 0.6332 45.009 44.725 45.358 -5.5391 134 39 4 0 0 0 0.0084349 4 31560 31560;31696;31828;31972 107.1 53.696 1 971040000 66969 9567 44546 45550 78216;78217;78218;78219 78216 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2220153808594 3 360.221742 1077.6434 1.9167 0.00069043 -1.0596 -0.00038169 0.85708 0.00030874 360.22124002227304 54.115 0.22167 48.25 48.099 48.32 -5.8653 18 11 2 0 0 0 0.14594 1 34257 34257 28.495 13.246 1 5877600 66970 9567 44546 45550 78220 78220 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2223205566406 3 360.221742 1077.6434 1.4959 0.00053886 0.14729 5.3058E-05 1.6432 0.00059192 360.2217600987475 57.705 0.64586 51.678 51.277 51.923 -6.0275 47 35 2 0 0 0 0.040733 3 36719 36719;36841;36972 49.527 26.869 1 35400000 66971 9567 44546 45550 78221;78222;78223 78221 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2227478027344 3 360.221742 1077.6434 1.6258 0.00058566 0.066636 2.4004E-05 1.6925 0.00060966 360.2217455835308 58.26 0.72274 52.205 51.894 52.617 -6.0557 92 39 3 0 0 0 0.076472 3 37557 37294;37425;37557 38.615 18.17 1 47450000 66972 9567 44546 45550 78224;78225;78226 78226 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2222595214844 3 360.221742 1077.6434 2.0794 0.00074904 -0.61992 -0.00022331 1.4595 0.00052573 360.22161373400513 58.906 1.0396 52.831 52.475 53.514 -6.0745 100 57 3 0 0 0 0.060956 3 37694 37694;37822;37952 42.312 14.083 1 49903000 66973 9567 44546 45550 78227;78228;78229 78227 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.829345703125 2 539.828975 1077.6434 NaN NaN NaN NaN NaN NaN NaN 59.109 1 53.034 52.534 53.534 -6.0745 0 0 0 0.060906 1 37918 37918 57.249 18.634 1 66974 9567 44546 45550 78230 78230 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.2215576171875 3 360.221742 1077.6434 NaN NaN NaN NaN NaN NaN NaN 59.474 1 53.359 52.859 53.859 -6.1147 0 0 0 0.14754 1 38191 38191 37.075 19.632 1 66975 9567 44546 45550 78231 78231 0.10768059688280118 TYLEKAIKI 9 Unmodified _TYLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.297607421875 2 539.828975 1077.6434 0.77031 0.00041584 -0.18805 -0.00010152 0.58226 0.00031432 539.8287579987203 58.166 1.0991 52.139 51.853 52.952 -6.0275 97 60 2 0 0 0 0.15936 1 37354 37354 27.629 7.1752 1 23685000 66976 9567 44546 45550 78232 78232 0.10768059688280118 TYLEKAVEV 9 Unmodified _TYLEKAVEV_ 0 0 0 ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF;ENST00000527389.2_1_11:108198407-108199966:+|nuORF ENSG00000149311|ENST00000675843|ATM ENSG00000149311|ENST00000675843|ATM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2891235351562 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 43.275 1 43.275 42.775 43.775 0 0 0 0 0.20976 1 23493 23493 29.841 1.3537 1 66977 6002 44547 45551 78233 78233 0.03646903520575506 TYLEKDKRL 9 Unmodified _TYLEKDKRL_ 0 0 0 REV__ENST00000378725.3_1_1:1480120-1509937:-|nuORF REV__ENST00000378725.3_1_1:1480120-1509937:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2260437011719 3 389.224034 1164.65027 NaN NaN NaN NaN NaN NaN NaN 53.657 1 47.853 47.353 48.353 -5.8042 0 0 0 0.39043 1 33941 33941 14.405 4.2548 1 + 66978 21512 44548 45552 78234 78234 0.07453372568852501 TYLEKFQNL 9 Unmodified _TYLEKFQNL_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.3047485351562 2 578.305864 1154.59717 0.60333 0.00034891 -0.61751 -0.00035711 -0.014177 -8.1984E-06 578.305501740535 53.693 0.25418 53.693 53.566 53.82 0 28 11 3 0 0 0 0.0085164 1 29748 29748 99.799 52.05 1 8536500 66979 2130 44549 45553 78235 78235 0.026059947862222543 TYLEKFQNL 9 Unmodified _TYLEKFQNL_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.306640625 2 578.305864 1154.59717 0.2474 0.00014307 0.46279 0.00026764 0.71019 0.00041071 578.3061505141927 54.247 0.27739 53.781 53.626 53.904 -0.46664 47 13 4 0 0 0 0.0082661 2 29353 29353;29457 92.491 50.652 1 44758000 66980 2130 44549 45553 78236;78237 78236 0.026059947862222543 TYLEKFQNL 9 Unmodified _TYLEKFQNL_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3048706054688 2 578.305864 1154.59717 0.096181 5.5622E-05 0.24623 0.00014239 0.34241 0.00019802 578.3059887026017 53.868 0.29348 53.801 53.688 53.981 -0.066936 34 14 4 0 0 0 0.0090948 1 29229 29229 85.272 50.87 1 6608700 66981 2130 44549 45553 78238 78238 0.026059947862222543 TYLEKFQNL 9 Unmodified _TYLEKFQNL_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.3070678710938 2 578.305864 1154.59717 0.96942 0.00056062 0.66796 0.00038628 1.6374 0.0009469 578.3062900210208 60.15 0.49331 54.036 53.814 54.307 -6.1147 74 25 4 0 0 0 0.0017364 2 38730 38599;38730 134.3 80.463 1 162670000 66982 2130 44549 45553 78239;78240 78240 0.026059947862222543 TYLEKVLQI 9 Unmodified _TYLEKVLQI_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8292236328125 2 553.826432 1105.63831 0.59281 0.00032831 1.7608 0.00097516 2.3536 0.0013035 553.8268191595597 63.123 0.16702 62.636 62.522 62.689 -0.48617 10 7 2 0 0 0 0.31356 1 34415 34415 22.736 0 1 3876200 + 66983 20189 44550 45554 78241 78241 0.08971755825677974 TYLERANCF 9 Carbamidomethyl (C) _TYLERANC(Carbamidomethyl (C))F_ TYLERANC(1)F TYLERANC(57)F 0 1 0 nc|ENSG00000158315|Q9NX52-3|RHBDL2;ENSG00000158315|ENST00000372990|RHBDL2 nc|ENSG00000158315|Q9NX52-3|RHBDL2 nc|ENSG00000158315|Q9NX52-3|RHBDL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.2720947265625 2 587.271498 1172.52844 0.45601 0.0002678 -0.8774 -0.00051527 -0.42139 -0.00024747 587.2697270616313 44.12 0.67249 39.29 38.836 39.509 -4.8296 70 45 2 0 0 0 0.026499 1 27031 27031 57.249 29.62 1 17931000 66984 6579 44551 45555 78242 78242 648 -0.05091992785196453 TYLFAKSCL 9 Carbamidomethyl (C) _TYLFAKSC(Carbamidomethyl (C))L_ TYLFAKSC(1)L TYLFAKSC(44)L 0 1 0 REV__ENSG00000176994|ENST00000406438|SMCR8 REV__ENSG00000176994|ENST00000406438|SMCR8 MSMS AL20221201_MKP_PDAC_01 4 551.7838134765625 2 551.78371 1101.55287 NaN NaN NaN NaN NaN NaN NaN 100.75 1 94.571 94.071 95.071 -6.1757 0 0 0 0.098496 1 67451 67451 43.772 7.6454 1 + 66985 22957 44552 45556 78243 78243 1048 0.006152673683345711 TYLFDLDY 8 Unmodified _TYLFDLDY_ 0 0 0 nc|ENSG00000152455|Q9H5I1-2|SUV39H2;ENSG00000152455|ENST00000354919|SUV39H2;nc|ENSG00000152455|Q9H5I1-3|SUV39H2;ENST00000482260.1_1_X:48563729-48565958:+|nuORF;ENSG00000101945|ENST00000376687|SUV39H1;nc|ENSG00000101945|O43463-2|SUV39H1 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 nc|ENSG00000152455|Q9H5I1-2|SUV39H2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.280517578125 2 525.244941 1048.47533 1.1946 0.00062746 0.33506 0.00017599 1.5297 0.00080344 525.245153541779 62.997 0.26257 56.822 56.653 56.916 -6.1757 18 12 2 0 0 0 8.7369 1 40626 40626 19.439 5.9311 1 11828000 66986 6186 44553 45557 78244 78244 -0.04697047296190249 TYLFNFLII 9 Unmodified _TYLFNFLII_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MSMS AL20221201_MKP_PDAC_01 4 572.3275146484375 2 572.326068 1142.63758 NaN NaN NaN NaN NaN NaN NaN 102.64 1 96.461 95.961 96.961 -6.1757 0 0 0 0.32622 1 68869 68869 32.305 16.458 1 66987 8967 44554 45558 78245 78245 0.0719696117660078 TYLFPIQVKTF 11 Unmodified _TYLFPIQVKTF_ 0 0 0 ENSG00000107625|ENST00000373585|DDX50;ENST00000483593.5_1_10:70666544-70673107:+|nuORF ENSG00000107625|ENST00000373585|DDX50 ENSG00000107625|ENST00000373585|DDX50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.8828125 2 678.881739 1355.74892 1.7301 0.0011745 0.27169 0.00018445 2.0018 0.001359 678.8813507734797 98.268 0.14812 92.093 92.014 92.163 -6.1757 15 9 2 0 0 0 0.00028183 1 65183 65183 91.085 70.67 1 16231000 66988 2506 44555 45559 78246 78246 0.08527975813876765 TYLGHFENGLF 11 Unmodified _TYLGHFENGLF_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4;ENSG00000171160|ENST00000307450|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.3139038085938 2 649.31422 1296.61389 NaN NaN NaN NaN NaN NaN NaN 71.662 1 71.186 70.686 71.686 -0.47609 0 0 0 0.79635 1 39219 39219 12.241 6.9438 1 66989 16381 44556 45560 78247 78247 -0.022555043278771336 TYLGKYWAI 9 Unmodified _TYLGKYWAI_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8 nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7994384765625 2 557.800217 1113.58588 1.0482 0.00058471 -1.9012 -0.0010605 -0.85291 -0.00047576 557.7996488727367 83.279 0.79775 77.104 76.731 77.528 -6.1757 66 42 2 0 0 0 0.037253 3 54723 54723;54850;55030 56.177 26.336 1 10652000 66990 6443 44557 45561 78248;78249;78250 78248 0.033632174827062045 TYLGKYWAI 9 Unmodified _TYLGKYWAI_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8 nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS AL20221201_MKP_PDAC_01 4 557.8012084960938 2 557.800217 1113.58588 NaN NaN NaN NaN NaN NaN NaN 83.692 1 77.516 77.016 78.016 -6.1757 0 0 0 0.20097 1 55043 55043 39.95 20.588 1 66991 6443 44557 45561 78251 78251 0.033632174827062045 TYLGKYWAI 9 Unmodified _TYLGKYWAI_ 0 0 0 nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8 nc|ENSG00000156261|P50990-3|CCT8 nc|ENSG00000156261|P50990-3|CCT8 MSMS AL20221201_MKP_PDAC_01 4 557.7998657226562 2 557.800217 1113.58588 NaN NaN NaN NaN NaN NaN NaN 83.884 1 77.708 77.208 78.208 -6.1757 0 0 0 0.20976 1 55169 55169 25.399 4.9457 1 66992 6443 44557 45561 78252 78252 0.033632174827062045 TYLGVESFDE 10 Unmodified _TYLGVESFDE_ 0 0 0 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 ENSG00000181790|ENST00000517894|ADGRB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.1769714355469 3 387.176638 1158.50808 0.67179 0.0002601 1.4048 0.0005439 2.0766 0.000804 387.1771392580167 30.194 0.23038 30.114 29.975 30.205 -0.080429 25 8 4 0 0 0 0.60623 1 15648 15648 6.1918 1.2948 1 9809800 66993 8997 44558 45562 78253 78253 -0.06482884963975266 TYLIHLFHTF 10 Unmodified _TYLIHLFHTF_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.887939453125 3 431.232641 1290.67609 0.36113 0.00015573 -0.20444 -8.8163E-05 0.15669 6.757E-05 431.2325138384232 75.039 0.22628 75.085 74.92 75.147 0.045959 13 10 2 0 0 0 0.22728 1 41351 41351 12.873 9.553 1 2690600 66994 2815 44559 45563 78254 78254 0.04238266811103131 TYLILVKHG 9 Unmodified _TYLILVKHG_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3160400390625 2 522.316035 1042.61752 NaN NaN NaN NaN NaN NaN NaN 53.644 1 53.58 53.08 54.08 -0.063423 0 0 0 0.50124 1 29107 29107 15.847 3.6065 1 66995 3541 44560 45564 78255 78255 0.09791210236653569 TYLIPTNNQ 9 Unmodified _TYLIPTNNQ_ 0 0 0 REV__ENSG00000166750|ENST00000299977|SLFN5 REV__ENSG00000166750|ENST00000299977|SLFN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.3969116210938 2 532.274564 1062.53457 1.1201 0.00059621 1.9856 0.0010569 3.1058 0.0016531 532.2758247542242 82.556 0.28757 82.618 82.5 82.788 0.062004 15 10 2 0 0 0 0.16418 1 45671 45671 25.399 4.9457 1 1706100 + 66996 22146 44561 45565 78256 78256 0.0058084871798200766 TYLIQHQKI 9 Unmodified _TYLIQHQKI_ 0 0 0 nc|ENSG00000136870|O75820-3|ZNF189;nc|ENSG00000136870|O75820-4|ZNF189;nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.8887634277344 3 381.888874 1142.64479 0.13781 5.2627E-05 0.77585 0.00029629 0.91365 0.00034891 381.88912054643606 31.662 0.1931 31.533 31.408 31.601 -0.12915 15 7 3 0 0 0 0.036857 1 16458 16458 51.63 26.639 1 2765400 66997 4874 44562 45566 78257 78257 0.07917693777039858 TYLIQHQKI 9 Unmodified _TYLIQHQKI_ 0 0 0 nc|ENSG00000136870|O75820-3|ZNF189;nc|ENSG00000136870|O75820-4|ZNF189;nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8895263671875 3 381.888874 1142.64479 1.0952 0.00041826 0.6834 0.00026098 1.7786 0.00067924 381.888901129791 35.525 0.29956 31.332 31.126 31.425 -4.1928 30 18 2 0 0 0 0.18144 1 20562 20562 24.991 7.5483 1 10865000 66998 4874 44562 45566 78258 78258 0.07917693777039858 TYLIQHQKI 9 Unmodified _TYLIQHQKI_ 0 0 0 nc|ENSG00000136870|O75820-3|ZNF189;nc|ENSG00000136870|O75820-4|ZNF189;nc|ENSG00000136870|O75820-2|ZNF189;ENSG00000136870|ENST00000339664|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 nc|ENSG00000136870|O75820-3|ZNF189 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.888874 1142.64479 -0.35349 -0.00013499 -5.2311 -0.0019977 -5.5846 -0.0021327 382.21977707117736 31.78 0.15909 31.78 31.681 31.84 0 0.2317 -0.0067394 NaN 51.63 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 497420 66999 4874 44562 45566 0.07917693777039858 TYLIQHQRI 9 Unmodified _TYLIQHQRI_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2243957519531 3 391.224257 1170.65094 -0.084527 -3.3069E-05 0.555 0.00021713 0.47047 0.00018406 391.2243975551155 32.283 0.224 32.153 32.042 32.266 -0.12915 20 8 3 0 0 0 0.13231 1 16827 16827 29.841 23.649 1 2679100 67000 1674 44563 45567 78259 78259 0.07244212008549766 TYLIQHQRI 9 Unmodified _TYLIQHQRI_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 391.224257 1170.65094 -0.28399 -0.0001111 0.49748 0.00019463 0.2135 8.3525E-05 391.5586437161125 32.154 0.17902 32.183 32.058 32.237 0.029743 0.085811 -0.00022172 NaN 29.841 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1102800 67001 1674 44563 45567 0.07244212008549766 TYLIQHQRI 9 Unmodified _TYLIQHQRI_ 0 0 0 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 ENSG00000096654|ENST00000683788|ZNF184 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 391.224257 1170.65094 1.2365 0.00048374 0.89497 0.00035013 2.1315 0.00083388 391.22467224039036 36.149 0.44233 31.956 31.694 32.137 -4.1928 -0.14162 0.0002448 NaN 29.841 39 26 2 NaN NaN NaN NaN 0 NaN NaN 0 15787000 67002 1674 44563 45567 0.07244212008549766 TYLIVTSLL 9 Unmodified _TYLIVTSLL_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;nc|ENSG00000170540|Q15041-3|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.8112487792969 2 511.810251 1021.60595 1.1636 0.00059555 0.47994 0.00024564 1.6436 0.00084119 511.8107361869359 101.07 0.1084 94.899 94.831 94.939 -6.1757 14 5 3 0 0 0 0.2143 1 67765 67765 21.747 9.2151 1 43205000 67003 8000 44564 45568 78260 78260 0.09600968422682854 TYLKAVKLF 9 Unmodified _TYLKAVKLF_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5589904785156 3 361.558466 1081.65357 -0.55355 -0.00020014 0.82096 0.00029683 0.26741 9.6685E-05 361.5586757734785 56.11 0.30879 56.041 55.885 56.194 -0.068741 38 15 3 0 0 0 0.047196 2 30461 30461;30570 34.932 27.83 1 26934000 67004 4818 44565 45569 78261;78262 78261 0.11600667413495103 TYLKAVKLF 9 Unmodified _TYLKAVKLF_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.5588073730469 3 361.558466 1081.65357 0.75852 0.00027425 1.1502 0.00041585 1.9087 0.0006901 361.5589452137698 85.117 0.58812 78.942 78.689 79.277 -6.1757 83 36 3 0 0 0 0.031062 3 56062 55931;56062;56189 41.956 37.427 1 54937000 67005 4818 44565 45569 78263;78264;78265 78264 0.11600667413495103 TYLKAVKLF 9 Unmodified _TYLKAVKLF_ 0 0 0 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 ENSG00000136381|ENST00000258886|IREB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.834716796875 2 541.83406 1081.65357 -0.041209 -2.2328E-05 0.34836 0.00018875 0.30715 0.00016642 541.834296946615 85.175 0.4462 78.999 78.749 79.196 -6.1757 55 27 3 0 0 0 0.010301 3 56004 55932;56004;56132 79.596 33.897 1 29286000 67006 4818 44565 45569 78266;78267;78268 78267 0.11600667413495103 TYLKKIPGF 9 Unmodified _TYLKKIPGF_ 0 0 0 nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8193359375 2 533.81841 1065.62227 0.86326 0.00046083 0.34454 0.00018392 1.2078 0.00064475 533.818543671837 47.271 0.31129 47.233 47.1 47.411 -0.038643 29 14 3 0 0 0 0.018301 1 25464 25464 65.235 43.488 1 3493200 67007 4455 44566 45570 78269 78269 0.0920809437943717 TYLKKIPGF 9 Unmodified _TYLKKIPGF_ 0 0 0 nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 nc|ENSG00000132824|Q13530-2|SERINC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2151184082031 3 356.214699 1065.62227 0.74617 0.0002658 0.61107 0.00021767 1.3572 0.00048347 356.21487118305504 47.289 0.31129 47.25 47.1 47.411 -0.038647 44 14 4 0 0 0 0.14602 1 25473 25473 20.415 16.225 1 5906400 67008 4455 44566 45570 78270 78270 0.0920809437943717 TYLKNGFVKK 10 Unmodified _TYLKNGFVKK_ 0 0 0 REV__nc|ENSG00000115896|Q15111-2|PLCL1 REV__nc|ENSG00000115896|Q15111-2|PLCL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2168273925781 3 399.904524 1196.69174 -0.26808 -0.00010721 0.089391 3.5748E-05 -0.17869 -7.1457E-05 399.90472672249695 51.54 0.19558 51.487 51.401 51.597 -0.053871 17 9 2 0 0 0 0.23966 1 27934 27934 3.3196 1.4133 1 2181100 + 67009 19013 44567 45571 78271 78271 0.10126553328177579 TYLLASQGDF 10 Unmodified _TYLLASQGDF_ 0 0 0 REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7745971679688 2 557.774396 1113.53424 0.54419 0.00030353 -0.27477 -0.00015326 0.26942 0.00015027 557.7741894054252 66.237 0.26811 66.237 66.153 66.421 0 19 11 2 0 0 0 0.60623 1 36975 36975 10.824 0 1 957450 + 67010 21232 44568 45572 78272 78272 -0.017985710018592727 TYLLASQGDF 10 Unmodified _TYLLASQGDF_ 0 0 0 REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B REV__nc|ENSG00000154529|Q96NU0-2|CNTNAP3B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 557.774396 1113.53424 0.54419 0.00030353 -0.27477 -0.00015326 0.26942 0.00015027 557.7741894054252 66.237 0.26811 66.237 66.153 66.421 0 0 0 NaN 10.824 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 957450 + 67011 21232 44568 45572 -0.017985710018592727 TYLLSVYRL 9 Unmodified _TYLLSVYRL_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3278198242188 2 564.326599 1126.63865 0.65135 0.00036757 0.13336 7.526E-05 0.78471 0.00044283 564.3266377885196 73.788 0.33125 73.832 73.654 73.985 0.043983 38 15 3 0 0 0 0.0082353 2 40631 40631;40744 96.111 39.934 1 13952000 67012 10689 44569 45573 78273;78274 78273 0.08039175545513899 TYLLSVYRL 9 Unmodified _TYLLSVYRL_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000484220.1_1_22:21119034-21147510:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3278198242188 2 564.326599 1126.63865 1.4217 0.00080233 0.39797 0.00022458 1.8197 0.0010269 564.3266619916722 90.744 0.6006 84.568 84.186 84.787 -6.1757 61 35 2 0 0 0 0.010611 2 59939 59810;59939 78.728 34.87 1 14933000 67013 10689 44569 45573 78275;78276 78276 0.08039175545513899 TYLNLRHNF 9 Unmodified _TYLNLRHNF_ 0 0 0 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2;ENST00000538126.5_1_16:71712656-71757677:-|nuORF nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2083129882812 3 393.208607 1176.60399 -0.19325 -7.5986E-05 -0.30925 -0.0001216 -0.5025 -0.00019759 393.20845997796414 41.394 0.18826 41.392 41.279 41.467 -0.0017929 19 8 3 0 0 0 0.070838 1 22110 22110 36.506 28.897 1 6976400 67014 647 44570 45574 78277 78277 0.022753524574227413 TYLNLRHNF 9 Unmodified _TYLNLRHNF_ 0 0 0 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2;ENST00000538126.5_1_16:71712656-71757677:-|nuORF nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 nc|ENSG00000040199|Q6ZVD8-2|PHLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2102355957031 3 393.208607 1176.60399 0.87177 0.00034279 2.0065 0.00078899 2.8783 0.0011318 393.20885293345754 46.029 0.30353 41.074 40.922 41.226 -4.9549 34 19 2 0 0 0 0.070838 1 28317 28317 29.841 19.041 1 18332000 67015 647 44570 45574 78278 78278 0.022753524574227413 TYLNWLVRM 9 Oxidation (M) _TYLNWLVRM(Oxidation (M))_ TYLNWLVRM(1) TYLNWLVRM(69) 0 0 1 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3159790039062 2 606.315709 1210.61686 0.76669 0.00046486 -0.19224 -0.00011656 0.57445 0.0003483 606.3158226329195 70.438 0.48917 70.474 70.252 70.741 0.035515 88 22 7 0 0 0 0.014417 2 38727 38727;38834 69.105 43.488 1 35489000 67016 2112 44571 45575 78279;78280 78279 364 0.019980475252850738 TYLNWLVRM 9 Oxidation (M) _TYLNWLVRM(Oxidation (M))_ TYLNWLVRM(1) TYLNWLVRM(110) 0 0 1 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3153076171875 2 606.315709 1210.61686 0.52424 0.00031785 -0.30884 -0.00018726 0.2154 0.0001306 606.315560081294 83.194 1.147 77.018 76.42 77.567 -6.1757 119 62 2 0 0 0 0.0059585 5 54598 54312;54446;54598;54847;54976 114.65 81.863 1 32466000 67017 2112 44571 45575 78281;78282;78283;78284;78285 78283 364 0.019980475252850738 TYLNWLVRM 9 Unmodified _TYLNWLVRM_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.317626953125 2 598.318251 1194.62195 -0.39732 -0.00023772 -1.0877 -0.00065079 -1.485 -0.00088851 598.3176223498801 98.802 0.15398 92.627 92.535 92.689 -6.1757 34 11 4 0 0 0 0.05447 1 65610 65610 43.858 26.916 1 371760000 67018 2112 44571 45576 78286 78286 0.03242351387916642 TYLNYVVHL 9 Unmodified _TYLNYVVHL_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3043823242188 2 561.303124 1120.5917 0.61463 0.00034499 0.69215 0.00038851 1.3068 0.0007335 561.3036159269745 70.94 0.32471 70.462 70.286 70.611 -0.47736 45 14 4 0 0 0 0.019979 2 38770 38770;38876 63.563 26.467 1 10703000 67019 9717 44572 45577 78287;78288 78287 0.036223159943801875 TYLNYVVHL 9 Unmodified _TYLNYVVHL_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3033447265625 2 561.303124 1120.5917 1.0908 0.00061229 -0.28451 -0.0001597 0.80632 0.00045259 561.3028827562887 70.342 0.29208 70.378 70.234 70.526 0.035507 35 13 3 0 0 0 0.052168 1 38703 38703 44.407 12.102 1 7127800 67020 9717 44572 45577 78289 78289 0.036223159943801875 TYLNYVVHL 9 Unmodified _TYLNYVVHL_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MSMS AL20221201_MKP_PDAC_01 4 561.300048828125 2 561.303124 1120.5917 NaN NaN NaN NaN NaN NaN NaN 85.377 1 79.201 78.701 79.701 -6.1757 0 0 0 0.13852 1 56226 56226 38.151 23.313 1 67021 9717 44572 45577 78290 78290 0.036223159943801875 TYLPAGQSVLL 11 Unmodified _TYLPAGQSVLL_ 0 0 0 nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1 nc|ENSG00000167085|P35232-2|PHB1 nc|ENSG00000167085|P35232-2|PHB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8317260742188 2 581.329339 1160.64412 0.72436 0.00042109 -4.2079 -0.0024462 -3.4835 -0.0020251 581.3261454643235 74.925 0.23396 74.971 74.834 75.068 0.045959 22 10 3 0 0 0 0.21511 1 41315 41315 31.268 15.119 1 4438800 67022 7569 44573 45578 78291 78291 0.07022854337355966 TYLPAGQSVLL 11 Unmodified _TYLPAGQSVLL_ 0 0 0 nc|ENSG00000167085|P35232-2|PHB1;ENSG00000167085|ENST00000300408|PHB1 nc|ENSG00000167085|P35232-2|PHB1 nc|ENSG00000167085|P35232-2|PHB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3295288085938 2 581.329339 1160.64412 0.84985 0.00049404 -1.0305 -0.00059906 -0.18065 -0.00010502 581.3290209985815 83.08 0.73354 76.905 76.554 77.287 -6.1757 117 39 4 0 0 0 0.017923 3 54628 54495;54628;54763 59.368 30.668 1 234170000 67023 7569 44573 45578 78292;78293;78294 78293 0.07022854337355966 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3054809570312 2 556.305332 1110.59611 0.62445 0.00034738 0.44817 0.00024932 1.0726 0.0005967 556.3053419330804 79.084 0.40477 78.598 78.372 78.776 -0.48596 44 17 3 0 0 0 0.047196 2 43248 43248;43352 46.021 16.809 1 4434300 67024 4756 44574 45579 78295;78296 78295 0.045237804172757023 TYLPQTYII 9 Unmodified _TYLPQTYII_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.3059692382812 2 556.305332 1110.59611 1.2367 0.00068798 -0.37403 -0.00020807 0.86267 0.00047991 556.3052842708839 86.919 0.76733 80.743 80.379 81.146 -6.1757 143 41 4 0 0 0 0.028475 3 57280 57159;57280;57528 56.177 13.074 1 231770000 67025 4756 44574 45579 78297;78298;78299 78298 0.045237804172757023 TYLPQVSHYRF 11 Unmodified _TYLPQVSHYRF_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9112243652344 3 470.910338 1409.70918 -0.0088438 -4.1646E-06 0.77638 0.00036561 0.76754 0.00036144 470.9107037418948 51.761 0.32171 51.702 51.533 51.854 -0.058918 51 15 5 0 0 0 0.12646 1 27991 27991 39.413 33.545 1 10722000 67026 5578 44575 45580 78300 78300 0.02071848863147352 TYLPREILNLI 11 Unmodified _TYLPREILNLI_ 0 0 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.8980712890625 2 672.89792 1343.78129 0.97626 0.00065693 0.23991 0.00016144 1.2162 0.00081836 672.897965811029 100.29 0.14131 94.112 94.03 94.171 -6.1757 21 8 3 0 0 0 1.3728E-17 1 67012 67012 142.92 62.243 1 165850000 67027 6992 44576 45581 78301 78301 0.12314763216909341 TYLPRRFP 8 Unmodified _TYLPRRFP_ 0 0 0 REV__ENST00000466561.1_1_1:17313027-17318334:-|nuORF REV__ENST00000466561.1_1_1:17313027-17318334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2984619140625 2 525.298176 1048.5818 0.52967 0.00027823 -1.2207 -0.00064125 -0.69106 -0.00036301 525.2974433627305 54.961 0.31462 54.961 54.812 55.126 0 24 13 2 0 0 0 0.73714 1 30591 30591 18.135 5.6034 1 5539200 + 67028 21477 44577 45582 78302 78302 0.05945172779661334 TYLPTNASLSF 11 Unmodified _TYLPTNASLSF_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3090209960938 2 607.308603 1212.60265 0.71971 0.00043709 -0.10252 -6.2262E-05 0.61719 0.00037482 607.3083602075058 74.654 0.44321 74.178 73.933 74.376 -0.47588 52 18 4 0 0 0 0.20054 2 40897 40800;40897 32.037 10.501 1 6481200 67029 5369 44578 45583 78303;78304 78304 0.004856735779867449 TYLPTNASLSF 11 Unmodified _TYLPTNASLSF_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.309326171875 2 607.308603 1212.60265 0.35882 0.00021791 0.59755 0.0003629 0.95637 0.00058081 607.3089208175088 74.138 0.31339 74.182 74.006 74.319 0.043976 35 13 3 0 0 0 0.26767 2 40826 40826;40933 28.495 13.246 1 7879700 67030 5369 44578 45583 78305;78306 78305 0.004856735779867449 TYLPTSPLL 9 Unmodified _TYLPTSPLL_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.7869567871094 2 502.786776 1003.559 0.55311 0.0002781 0.42651 0.00021445 0.97963 0.00049254 502.7868464841342 79.546 0.43643 79.056 78.821 79.257 -0.48932 67 18 5 0 0 0 0.06187 1 43588 43588 42.095 11.87 1 17506000 67031 1247 44579 45584 78307 78307 0.057361088715197184 TYLPTSPLL 9 Unmodified _TYLPTSPLL_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7867431640625 2 502.786776 1003.559 0.40185 0.00020204 0.58216 0.0002927 0.98401 0.00049475 502.78711735284475 79.014 0.32504 79.069 78.86 79.185 0.054977 29 12 3 0 0 0 0.14602 1 43694 43694 28.487 3.813 1 4068400 67032 1247 44579 45584 78308 78308 0.057361088715197184 TYLPTSPLL 9 Unmodified _TYLPTSPLL_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7874145507812 2 502.786776 1003.559 1.1597 0.00058309 -0.87324 -0.00043905 0.28648 0.00014404 502.78660199666706 87.07 0.97453 80.894 80.303 81.277 -6.1757 87 52 2 0 0 0 0.012148 3 57371 57261;57371;57497 74.423 23.568 1 197100000 67033 1247 44579 45584 78309;78310;78311 78310 0.057361088715197184 TYLQRALLV 9 Unmodified _TYLQRALLV_ 0 0 0 nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 nc|ENSG00000107862|Q92538-3|GBF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.826904296875 2 538.826766 1075.63898 NaN NaN NaN NaN NaN NaN NaN 60.509 1 60.465 59.965 60.965 -0.04351 0 0 0 0.12961 1 33001 33001 41.956 21.084 1 67034 16108 44580 45585 78312 78312 0.1041859526535518 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2084045410156 3 398.208495 1191.60366 -0.19692 -7.8416E-05 0.42716 0.0001701 0.23024 9.1685E-05 398.2087862783318 41.975 0.27948 41.975 41.864 42.143 0 31 14 3 0 0 0 0.11784 2 22691 22681;22691 23.801 14.037 1 10438000 67035 2282 44581 45586 78313;78314 78314 0.015519327375614012 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2076416015625 3 398.208495 1191.60366 -0.051672 -2.0576E-05 -0.82733 -0.00032945 -0.879 -0.00035002 398.2080672123768 42.221 0.25869 41.914 41.741 42 -0.30682 22 12 3 0 0 0 0.040683 1 22404 22404 46.022 21.141 1 29027000 67036 2282 44581 45586 78315 78315 0.015519327375614012 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MSMS AL20221201_MKP_PDAC_01 4 398.2090759277344 3 398.208495 1191.60366 NaN NaN NaN NaN NaN NaN NaN 46.559 1 41.479 40.979 41.979 -5.0805 0 0 0 0.098496 1 28792 28792 34.222 8.201 1 67037 2282 44581 45586 78316 78316 0.015519327375614012 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MSMS AL20221201_MKP_PDAC_01 4 397.8678894042969 3 398.208495 1191.60366 NaN NaN NaN NaN NaN NaN NaN 46.828 1 41.747 41.247 42.247 -5.0805 0 0 0 0.13831 1 28993 28993 42.312 19.654 1 67038 2282 44581 45586 78317 78317 0.015519327375614012 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MSMS AL20221201_MKP_PDAC_01 4 398.2098388671875 3 398.208495 1191.60366 NaN NaN NaN NaN NaN NaN NaN 47.019 1 41.939 41.439 42.439 -5.0805 0 0 0 0.16551 1 29135 29135 27.088 9.2252 1 67039 2282 44581 45586 78318 78318 0.015519327375614012 TYLRDQHFL 9 Unmodified _TYLRDQHFL_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 398.208495 1191.60366 0.50779 0.00020221 0.46044 0.00018335 0.96823 0.00038556 398.20861663660224 46.648 0.11018 41.567 41.48 41.59 -5.0805 -0.25168 0.00028357 NaN 46.022 35 28 2 NaN NaN NaN NaN 0 NaN NaN 0 40093000 67040 2282 44581 45586 0.015519327375614012 TYLREKHQI 9 Unmodified _TYLREKHQI_ 0 0 0 nc|ENSG00000170927|P08F94-2|PKHD1;ENSG00000170927|ENST00000371117|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 nc|ENSG00000170927|P08F94-2|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5560302734375 3 396.555895 1186.64586 -0.58125 -0.0002305 0.2955 0.00011718 -0.28575 -0.00011331 396.5558933838353 18.096 0.097221 18.096 18.046 18.143 0 8 6 2 0 0 0 0.59218 1 8970 8970 4.897 4.1205 1 431590 67041 8046 44582 45587 78319 78319 0.059999081459409354 TYLREQCLRD 10 Unmodified _TYLREQCLRD_ 0 0 0 ENSG00000187871|ENST00000340465|GFRAL ENSG00000187871|ENST00000340465|GFRAL ENSG00000187871|ENST00000340465|GFRAL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8855895996094 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 45.052 1 45.052 44.552 45.552 0 0 0 0 0.97556 1 24539 24539 3.3196 0.68841 1 67042 9605 44583 45588 78320 78320 -0.006769608023432738 TYLRFFPPL 9 Unmodified _TYLRFFPPL_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3209838867188 2 577.32386 1152.63317 1.2298 0.00070997 0.95153 0.00054934 2.1813 0.0012593 577.322699333256 94.093 0.22047 87.917 87.88 88.1 -6.1757 21 12 2 0 0 0 0.28047 1 62335 62335 18.135 3.1778 1 12542000 67043 5782 44584 45589 78321 78321 0.06295496753705265 TYLRKIPRF 9 Unmodified _TYLRKIPRF_ 0 0 0 nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF nc|ENSG00000175455|Q49A88-5|CCDC14 nc|ENSG00000175455|Q49A88-5|CCDC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5768432617188 3 398.576631 1192.70806 -0.42625 -0.00016989 0.86765 0.00034583 0.44141 0.00017593 398.5769319233831 36.719 0.34324 36.741 36.599 36.942 0.021545 26 15 2 0 0 0 0.039985 1 19448 19448 45.74 30.491 1 3755500 67044 8518 44585 45590 78322 78322 0.11941679284927886 TYLRKIPRF 9 Unmodified _TYLRKIPRF_ 0 0 0 nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF nc|ENSG00000175455|Q49A88-5|CCDC14 nc|ENSG00000175455|Q49A88-5|CCDC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5777587890625 3 398.576631 1192.70806 0.48794 0.00019448 0.89934 0.00035846 1.3873 0.00055294 398.5768984034196 41.285 0.36779 36.678 36.449 36.817 -4.6079 50 22 3 0 0 0 0.094149 1 24724 24724 38.615 31.006 1 30229000 67045 8518 44585 45590 78323 78323 0.11941679284927886 TYLRKIPRF 9 Unmodified _TYLRKIPRF_ 0 0 0 nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000485727.5_1_3:123675165-123675318:-|nuORF;ENST00000438440.2_1_3:123674869-123680035:-|nuORF nc|ENSG00000175455|Q49A88-5|CCDC14 nc|ENSG00000175455|Q49A88-5|CCDC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5768432617188 3 398.576631 1192.70806 0.43086 0.00017173 0.44464 0.00017722 0.87549 0.00034895 398.5768143588711 78.424 0.73036 72.249 71.935 72.665 -6.1757 87 44 2 0 0 0 0.19127 2 51419 51419;51560 23.79 19.261 1 62901000 67046 8518 44585 45590 78324;78325 78324 0.11941679284927886 TYLRLGNF 8 Unmodified _TYLRLGNF_ 0 0 0 ENST00000475306.1_1_1:24410803-24434643:-|nuORF ENST00000475306.1_1_1:24410803-24434643:-|nuORF ENST00000475306.1_1_1:24410803-24434643:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2669067382812 2 492.269084 982.523616 0.83263 0.00040988 -1.9264 -0.0009483 -1.0938 -0.00053842 492.2690060781956 42.851 0.39951 42.851 42.586 42.985 0 48 20 3 0 0 0 0.60622 1 23137 23137 25.399 9.6311 1 19963000 67047 13959 44586 45591 78326 78326 0.03165491134370768 TYLSAGSPLSF 11 Unmodified _TYLSAGSPLSF_ 0 0 0 ENST00000339174.9_2_Y:16636616-16734060:+|nuORF ENST00000339174.9_2_Y:16636616-16734060:+|nuORF ENST00000339174.9_2_Y:16636616-16734060:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.3057861328125 2 571.790047 1141.56554 0.35957 0.0002056 -0.70836 -0.00040504 -0.34879 -0.00019944 571.789809716118 63.088 0.21109 63.088 63.008 63.219 0 12 8 2 0 0 0 0.30139 1 35256 35256 5.7319 0 1 680890 67048 11948 44587 45592 78327 78327 0.0004200203222808341 TYLSHLEAL 9 Unmodified _TYLSHLEAL_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7801513671875 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 57.625 1 57.625 57.125 58.125 0 0 0 0 0.025979 1 32070 32070 71.134 37.031 1 67049 9501 44588 45593 78328 78328 0.023460367233838042 TYLSHLEAL 9 Unmodified _TYLSHLEAL_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7815551757812 2 523.779482 1045.54441 0.19974 0.00010462 2.852 0.0014938 3.0517 0.0015984 523.7801208743163 58.159 0.3124 57.669 57.39 57.702 -0.48974 18 14 2 0 0 0 0.031062 1 31607 31607 54.774 33.027 1 4147200 67050 9501 44588 45593 78329 78329 0.023460367233838042 TYLSHLEAL 9 Unmodified _TYLSHLEAL_ 0 0 0 nc|ENSG00000186716|P11274-2|BCR;ENSG00000186716|ENST00000305877|BCR nc|ENSG00000186716|P11274-2|BCR nc|ENSG00000186716|P11274-2|BCR MSMS AL20221201_MKP_PDAC_01 4 523.7816162109375 2 523.779482 1045.54441 NaN NaN NaN NaN NaN NaN NaN 63.867 1 57.692 57.192 58.192 -6.1757 0 0 0 0.098163 1 41329 41329 43.858 11.553 1 67051 9501 44588 45593 78330 78330 0.023460367233838042 TYLSHQEKL 9 Unmodified _TYLSHQEKL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.53271484375 3 373.532868 1117.57677 -0.38649 -0.00014437 0.12501 4.6694E-05 -0.26148 -9.7671E-05 373.53293610821476 24.342 0.18721 24.342 24.239 24.426 0 30 12 3 0 0 0 0.43463 1 12448 12448 10.8 2.3552 1 2615200 67052 763 44589 45594 78331 78331 0.022688241263722375 TYLSHQEKL 9 Unmodified _TYLSHQEKL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5333862304688 3 373.532868 1117.57677 1.0137 0.00037866 -0.55519 -0.00020738 0.45853 0.00017128 373.5326915127746 27.372 0.27724 24.336 24.219 24.496 -3.0365 19 13 2 0 0 0 0.094149 1 15142 15142 32.037 18.423 1 10755000 67053 763 44589 45594 78332 78332 0.022688241263722375 TYLSHQEKL 9 Unmodified _TYLSHQEKL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64490935-64514966:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.532868 1117.57677 -0.38649 -0.00014437 0.12501 4.6694E-05 -0.26148 -9.7671E-05 373.53293610821476 24.342 0.18721 24.342 24.239 24.426 0 0.0032319 0.00030178 NaN 32.037 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2615200 67054 763 44589 45594 0.022688241263722375 TYLSIIHSL 9 Unmodified _TYLSIIHSL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7973022460938 2 523.797675 1045.5808 0.59812 0.00031329 -0.9563 -0.00050091 -0.35819 -0.00018762 523.7971640310222 73.756 0.45695 73.28 73.092 73.549 -0.47588 56 21 4 0 0 0 0.0082281 2 40320 40320;40419 92.822 28.586 1 23996000 67055 4480 44590 45595 78333;78334 78333 0.05982913620096042 TYLSIIHSL 9 Unmodified _TYLSIIHSL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.7984008789062 2 523.797675 1045.5808 0.12874 6.7432E-05 0.27979 0.00014655 0.40853 0.00021398 523.7977523664786 73.216 0.49455 73.258 73.048 73.543 0.041725 67 22 4 0 0 0 0.0090851 2 40409 40296;40409 85.357 27.885 1 43385000 67056 4480 44590 45595 78335;78336 78336 0.05982913620096042 TYLSIIHSL 9 Unmodified _TYLSIIHSL_ 0 0 0 ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP ENSG00000133030|ENST00000651222|MPRIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7977294921875 2 523.797675 1045.5808 0.71811 0.00037615 -0.14816 -7.7604E-05 0.56996 0.00029854 523.7975799389027 92.711 0.60403 86.535 86.166 86.77 -6.1757 110 37 4 0 0 0 0.0090851 3 61317 61188;61317;61446 85.357 27.885 1 152410000 67057 4480 44590 45595 78337;78338;78339 78338 0.05982913620096042 TYLTIFDLF 9 Unmodified _TYLTIFDLF_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.309814453125 2 566.799883 1131.58521 1.3429 0.00076118 0.056013 3.1748E-05 1.399 0.00079293 566.8000518164716 102.59 0.09713 96.417 96.373 96.47 -6.1757 40 17 3 0 0 0 0.07019 1 68834 68834 44.407 21.259 1 31136000 67058 6205 44591 45596 78340 78340 0.024683780429768376 TYLTNHLRL 9 Unmodified _TYLTNHLRL_ 0 0 0 ENSG00000143067|ENST00000421812|ZNF697 ENSG00000143067|ENST00000421812|ZNF697 ENSG00000143067|ENST00000421812|ZNF697 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5492248535156 3 377.548741 1129.62439 0.5653 0.00021343 0.68857 0.00025997 1.2539 0.0004734 377.54892820486623 46.102 0.34416 46.074 45.844 46.189 -0.028011 38 15 3 0 0 0 0.08907 1 24805 24805 35.612 17.239 1 18213000 67059 5459 44592 45597 78341 78341 0.06476523117225952 TYLTNHLRL 9 Unmodified _TYLTNHLRL_ 0 0 0 ENSG00000143067|ENST00000421812|ZNF697 ENSG00000143067|ENST00000421812|ZNF697 ENSG00000143067|ENST00000421812|ZNF697 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5487670898438 3 377.548741 1129.62439 1.5322 0.00057849 -0.44297 -0.00016724 1.0892 0.00041124 377.54851015670675 50.997 0.24492 45.348 45.17 45.415 -5.649 25 14 2 0 0 0 0.033587 1 31998 31998 53.404 23.563 1 34485000 67060 5459 44592 45597 78342 78342 0.06476523117225952 TYLVEIRQ 8 Unmodified _TYLVEIRQ_ 0 0 0 REV__nc|ENSG00000162706|Q8N126-2|CADM3 REV__nc|ENSG00000162706|Q8N126-2|CADM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2883911132812 2 511.287474 1020.5604 0.45401 0.00023213 0.58999 0.00030166 1.044 0.00053379 511.28779463021004 47.534 0.22278 47.181 47.105 47.328 -0.3526 15 10 2 0 0 0 0.54555 1 25492 25492 30.637 2.1497 1 4489300 + 67061 21680 44593 45598 78343 78343 0.05093742960286818 TYLVQVQAL 9 Unmodified _TYLVQVQAL_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7985229492188 2 517.797675 1033.5808 0.11397 5.9013E-05 -0.19203 -9.9432E-05 -0.078058 -4.0418E-05 517.7982500929817 70.38 0.43636 70.38 70.153 70.589 0 27 18 2 0 0 0 0.16226 1 39192 39192 26.884 12.978 1 1283800 67062 5434 44594 45599 78344 78344 0.06534913620089355 TYLVQVQAL 9 Unmodified _TYLVQVQAL_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7971801757812 2 517.797675 1033.5808 0.3359 0.00017393 0.011165 5.7812E-06 0.34706 0.00017971 517.7976234652847 70.891 0.38567 70.414 70.225 70.611 -0.47735 33 17 2 0 0 0 0.022193 2 38744 38744;38852 61.357 27.255 1 10232000 67063 5434 44594 45599 78345;78346 78345 0.06534913620089355 TYLVQVQAL 9 Unmodified _TYLVQVQAL_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7976684570312 2 517.797675 1033.5808 0.27571 0.00014276 -1.2972 -0.00067171 -1.0215 -0.00052895 517.7975111322877 78.504 0.57056 72.328 72.041 72.611 -6.1757 73 34 3 0 0 0 0.022193 2 51392 51392;51522 61.357 24.274 1 41259000 67064 5434 44594 45599 78347;78348 78347 0.06534913620089355 TYLVQVQAL 9 Unmodified _TYLVQVQAL_ 0 0 0 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.797675 1033.5808 0.74279 0.00038461 -0.25354 -0.00013128 0.48925 0.00025333 517.7973952709439 70.374 0.25812 70.409 70.291 70.549 0.035507 0.0083679 -0.00021513 NaN 61.357 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 951290 67065 5434 44594 45599 0.06534913620089355 TYLWEFLLD 9 Unmodified _TYLWEFLLD_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ENSG00000109381|ENST00000686138|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENST00000404600.2_1_6:1514778-1515111:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.1769714355469 3 400.537619 1198.59103 0.76756 0.00030744 -0.83294 -0.00033363 -0.065379 -2.6187E-05 400.53725641665363 75.444 0.30531 74.967 74.821 75.126 -0.47714 28 17 2 0 0 0 0.21767 1 41221 41221 2.9952 0.90923 1 2643100 67066 2645 44595 45600 78349 78349 -0.00032523445338483725 TYLYLYMHI 9 Unmodified _TYLYLYMHI_ 0 0 0 ENST00000609796.1_1_20:1460117-1472086:-|nuORF ENST00000609796.1_1_20:1460117-1472086:-|nuORF ENST00000609796.1_1_20:1460117-1472086:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.205810546875 3 406.207216 1215.59982 NaN NaN NaN NaN NaN NaN NaN 42.092 1 37.407 36.907 37.907 -4.6846 0 0 0 0.58748 1 25381 25381 13.042 4.0662 1 67067 15886 44596 45601 78350 78350 0.000641269195057248 TYMALWARW 9 Unmodified _TYMALWARW_ 0 0 0 REV__ENST00000306917.4_1_15:68570678-68570810:+|nuORF REV__ENST00000306917.4_1_15:68570678-68570810:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8684692382812 3 399.867305 1196.58008 -0.54509 -0.00021796 2.3872 0.00095457 1.8421 0.00073661 399.8684429855703 26.108 0.2095 26.108 25.965 26.175 0 16 11 2 0 0 0 0.55144 1 13387 13387 2.4985 0 1 1347700 + 67068 25384 44597 45602 78351 78351 -0.010342043006176027 TYMCYFDGF 9 Unmodified _TYMCYFDGF_ 0 0 0 REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8141784667969 3 382.813878 1145.4198 NaN NaN NaN NaN NaN NaN NaN 73.905 1 73.429 72.929 73.929 -0.47588 0 0 0 0.85737 1 40449 40449 0.26902 0 1 + 67069 22010 44598 45603 78352 78352 -0.14708920079829113 TYMDRVFKQF 10 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ TYM(1)DRVFKQF TYM(51)DRVFKQF 0 0 1 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 675.8302001953125 2 675.82918 1349.64381 0.35556 0.0002403 0.37712 0.00025487 0.73268 0.00049517 675.8294471362144 41.115 0.21254 41.113 41.008 41.221 -0.0017891 15 9 2 0 0 0 0.078417 1 21962 21962 51.488 32.126 1 2449600 67070 6572 44599 45604 78353 78353 1149 -0.017028886541766042 TYMDRVFKQF 10 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ TYM(1)DRVFKQF TYM(76)DRVFKQF 0 0 1 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8305053710938 2 675.82918 1349.64381 0.70092 0.0004737 0.68131 0.00046045 1.3822 0.00093415 676.3312346661415 45.898 0.24737 40.943 40.802 41.049 -4.9549 20 15 2 0 0 0 0.020109 1 28236 28236 75.571 50.58 1 10477000 67071 6572 44599 45604 78354 78354 1149 -0.017028886541766042 TYMDRVFKQF 10 Oxidation (M) _TYM(Oxidation (M))DRVFKQF_ TYM(1)DRVFKQF TYM(51)DRVFKQF 0 0 1 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8306884765625 2 675.82918 1349.64381 0.39923 0.00026981 -1.0048 -0.00067907 -0.60557 -0.00040926 675.8281047459388 46.489 0.050625 41.408 41.393 41.444 -5.0805 6 5 2 0 0 0 0.078417 1 28725 28725 51.488 31.034 1 27637000 67072 6572 44599 45604 78355 78355 1149 -0.017028886541766042 TYMDRVFKQF 10 Unmodified _TYMDRVFKQF_ 0 0 0 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 445.5568542480469 3 445.556907 1333.64889 0.28627 0.00012755 -0.86127 -0.00038374 -0.575 -0.00025619 445.5566198536336 56.419 0.24451 56.35 56.194 56.438 -0.068741 39 12 4 0 0 0 0.38092 1 30669 30669 19.626 8.727 1 34640000 67073 6572 44599 45605 78356 78356 -0.004585847915677732 TYMDRVFKQF 10 Unmodified _TYMDRVFKQF_ 0 0 0 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 667.83349609375 2 667.831723 1333.64889 0.21937 0.00014651 -0.17429 -0.0001164 0.045082 3.0107E-05 667.8326431747989 56.429 0.16972 56.36 56.23 56.4 -0.068741 13 8 2 0 0 0 0.078417 1 30677 30677 51.488 32.126 1 3915200 67074 6572 44599 45605 78357 78357 -0.004585847915677732 TYMDRVFKQF 10 Unmodified _TYMDRVFKQF_ 0 0 0 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.5576782226562 3 445.556907 1333.64889 0.7125 0.00031746 -0.043395 -1.9335E-05 0.66911 0.00029813 445.5571148824674 78.764 0.81888 72.588 72.255 73.073 -6.1757 162 48 4 0 0 0 0.087043 4 51398 51398;51534;51667;51797 49.742 39.427 1 90486000 67075 6572 44599 45605 78358;78359;78360;78361 78358 -0.004585847915677732 TYMDRVFKQF 10 Unmodified _TYMDRVFKQF_ 0 0 0 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.8324584960938 2 667.831723 1333.64889 0.28524 0.00019049 0.59253 0.00039571 0.87777 0.0005862 667.8320801984868 78.756 0.68559 72.581 72.341 73.026 -6.1757 101 40 3 0 0 0 0.00018404 2 51594 51594;51739 117.84 91.569 1 30882000 67076 6572 44599 45605 78362;78363 78362 -0.004585847915677732 TYMEEERNFT 10 Unmodified _TYMEEERNFT_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.2835083007812 2 660.28226 1318.54997 0.31681 0.00020918 1.1629 0.00076782 1.4797 0.000977 660.2832288412993 49.412 0.23923 49.412 49.296 49.536 0 23 10 3 0 0 0 0.60623 1 27207 27207 10.824 3.5347 1 2963600 67077 8008 44600 45606 78364 78364 -0.09656652547118938 TYMETYVYF 9 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ TYM(1)ETYVYF TYM(60)ETYVYF 0 0 1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7623901367188 2 616.76264 1231.51073 0.49143 0.0003031 -0.25621 -0.00015802 0.23523 0.00014508 616.7625915060249 68.887 0.4729 68.887 68.679 69.152 0 78 20 5 0 0 0 0.023164 2 38423 38324;38423 60.39 34.99 1 9483000 67078 478 44601 45607 78365;78366 78366 66 -0.09576752830685109 TYMETYVYF 9 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ TYM(1)ETYVYF TYM(67)ETYVYF 0 0 1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.7634887695312 2 616.76264 1231.51073 0.099739 6.1515E-05 0.65973 0.0004069 0.75947 0.00046841 616.7631673900402 69.455 0.52555 68.976 68.742 69.267 -0.47903 62 22 4 0 0 0 0.016184 2 37988 37888;37988 67.344 48.087 1 7550300 67079 478 44601 45607 78367;78368 78368 66 -0.09576752830685109 TYMETYVYF 9 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ TYM(1)ETYVYF TYM(71)ETYVYF 0 0 1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7632446289062 2 616.76264 1231.51073 0.63909 0.00039417 0.15352 9.4686E-05 0.79262 0.00048886 616.7627485876246 75.905 0.62789 69.729 69.376 70.004 -6.1757 87 33 3 0 0 0 0.013472 3 49661 49536;49661;49786 70.716 41.133 1 47693000 67080 478 44601 45607 78369;78370;78371 78370 66 -0.09576752830685109 TYMETYVYF 9 Oxidation (M) _TYM(Oxidation (M))ETYVYF_ 0 0 1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 616.76264 1231.51073 0.85025 0.00052441 -0.4939 -0.00030462 0.35635 0.00021979 616.7623198980634 68.925 0.33034 68.951 68.793 69.123 0.025154 0.012752 -0.00075314 NaN 67.344 24 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2036300 67081 478 44601 45607 66 -0.09576752830685109 TYMETYVYF 9 Unmodified _TYMETYVYF_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7650756835938 2 608.765183 1215.51581 NaN NaN NaN NaN NaN NaN NaN 65.532 1 65.532 65.032 66.032 0 0 0 0 0.82396 1 36552 36552 4.756 0.81161 1 67082 478 44601 45608 78372 78372 -0.08332448968053541 TYMETYVYF 9 Unmodified _TYMETYVYF_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7655639648438 2 608.765183 1215.51581 0.9654 0.0005877 -0.592 -0.00036039 0.37341 0.00022732 608.7648338751809 87.742 0.63141 81.566 81.257 81.889 -6.1757 86 34 3 0 0 0 0.013472 3 57866 57746;57866;57987 70.716 51.497 1 76646000 67083 478 44601 45608 78373;78374;78375 78374 -0.08332448968053541 TYMFCRMLI 9 Unmodified _TYMFCRMLI_ 0 0 0 REV__ENST00000358517.6_1_6:151162047-151162251:+|nuORF REV__ENST00000358517.6_1_6:151162047-151162251:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1902770996094 3 393.190403 1176.54938 1.1837 0.00046541 -0.28664 -0.0001127 0.89704 0.00035271 393.1902428293236 80.304 2.0794 74.129 72.437 74.516 -6.1757 150 121 2 0 0 0 0.5029 2 52656 52516;52656 5.2969 3.3905 1 21484000 + 67084 25879 44602 45609 78376;78377 78377 -0.03183442001500225 TYMGHTGAVW 10 Oxidation (M) _TYM(Oxidation (M))GHTGAVW_ TYM(1)GHTGAVW TYM(72)GHTGAVW 0 0 1 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7521362304688 2 569.752941 1137.49133 0.16202 9.2309E-05 -0.018404 -1.0486E-05 0.14361 8.1823E-05 569.7529154819889 35.669 0.38161 35.669 35.496 35.878 0 63 18 4 0 0 0 0.024115 2 18824 18824;18928 71.922 43.435 1 28992000 67085 1389 44603 45610 78378;78379 78378 233 -0.07191664330935055 TYMGHTGAVW 10 Oxidation (M) _TYM(Oxidation (M))GHTGAVW_ TYM(1)GHTGAVW TYM(82)GHTGAVW 0 0 1 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7537231445312 2 569.752941 1137.49133 -0.28761 -0.00016387 -0.37449 -0.00021337 -0.6621 -0.00037723 569.7528929894358 35.866 0.38295 35.644 35.43 35.813 -0.2224 62 16 5 0 0 0 0.013171 2 18715 18715;18818 81.89 59.154 1 48538000 67086 1389 44603 45610 78380;78381 78380 233 -0.07191664330935055 TYMGHTGAVW 10 Oxidation (M) _TYM(Oxidation (M))GHTGAVW_ TYM(1)GHTGAVW TYM(72)GHTGAVW 0 0 1 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7543334960938 2 569.752941 1137.49133 0.8384 0.00047768 -0.50587 -0.00028822 0.33253 0.00018946 569.752895693896 39.6 0.60542 35.149 34.796 35.402 -4.4509 124 37 4 0 0 0 0.024115 3 23334 23334;23467;23595 71.922 49.186 1 302130000 67087 1389 44603 45610 78382;78383;78384 78382 233 -0.07191664330935055 TYMGHTGAVW 10 Unmodified _TYMGHTGAVW_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I;ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7559814453125 2 561.755484 1121.49641 0.84899 0.00047693 -0.49954 -0.00028062 0.34945 0.00019631 561.7555092128846 49.007 0.56456 43.611 43.337 43.901 -5.3961 86 36 4 0 0 0 0.0045909 2 30618 30483;30618 99.799 75.125 1 249020000 67088 1389 44603 45611 78385;78386 78386 -0.059473604683034864 TYMHCGDDED 10 Unmodified _TYMHCGDDED_ 0 0 0 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 ENSG00000177202|ENST00000321762|SPACA4 MSMS AL20221201_MKP_PDAC_01 4 395.8006896972656 3 395.798956 1184.37504 NaN NaN NaN NaN NaN NaN NaN 14.421 1 11.918 11.418 12.418 -2.5029 0 0 0 1.0048 1 7324 7324 0.13989 0.13989 1 67089 8668 44604 45612 78387 78387 -0.2097739568380348 TYMIFFVLV 9 Unmodified _TYMIFFVLV_ 0 0 0 nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000153253|Q9NY46-4|SCN3A nc|ENSG00000196876|Q9UQD0-5|SCN8A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2814331054688 2 566.809196 1131.60384 0.30783 0.00017448 -2.132 -0.0012084 -1.8241 -0.0010339 566.8083018683909 63.891 0.31414 63.891 63.732 64.046 0 21 12 3 0 0 0 0.20728 1 35594 35594 4.756 0 1 1128600 67090 9878;6253 44605 45613 78388 78388 0.04330216413200105 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(77)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.79150390625 2 595.791732 1189.56891 0.084508 5.0349E-05 -0.4391 -0.00026161 -0.35459 -0.00021126 595.791565821205 45.591 0.47112 45.591 45.429 45.9 0 92 24 5 0 0 0 0.011291 2 24930 24814;24930 76.825 42.975 1 144100000 67091 5773 44606 45614 78389;78390 78390 1044 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(66)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7911376953125 2 595.791732 1189.56891 0.29807 0.00017759 -0.76737 -0.0004572 -0.4693 -0.00027961 595.7913942847035 45.976 0.46453 45.652 45.429 45.894 -0.32425 61 25 4 0 0 0 0.017075 1 24589 24589 66.457 35.82 1 39944000 67092 5773 44606 45614 78391 78391 1044 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(83)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7907104492188 2 595.791732 1189.56891 NaN NaN NaN NaN NaN NaN NaN 45.795 1 45.471 44.971 45.971 -0.32425 0 0 0 0.016321 1 24484 24484 83.429 41.589 1 67093 5773 44606 45614 78392 78392 1044 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(66)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.791259765625 2 595.791732 1189.56891 0.012056 7.1831E-06 -0.18562 -0.00011059 -0.17356 -0.00010341 595.7911115374718 45.766 0.27703 45.738 45.549 45.826 -0.028011 25 13 3 0 0 0 0.017075 1 24591 24591 66.457 35.82 1 6864500 67094 5773 44606 45614 78393 78393 1044 -0.018290711854206165 TYMKDLYQL 9 Oxidation (M) _TYM(Oxidation (M))KDLYQL_ TYM(1)KDLYQL TYM(86)KDLYQL 0 0 1 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.7911987304688 2 595.791732 1189.56891 0.58166 0.00034655 -0.88846 -0.00052934 -0.3068 -0.00018279 595.7913440961163 51.167 0.68588 45.518 45.103 45.789 -5.649 117 41 4 0 0 0 0.0089732 3 32076 31945;32076;32201 86.332 39.695 1 195650000 67095 5773 44606 45614 78394;78395;78396 78395 1044 -0.018290711854206165 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.793701171875 2 587.794275 1173.574 0.17075 0.00010037 -0.21815 -0.00012823 -0.047396 -2.7859E-05 587.7939691470787 56.839 0.28429 56.839 56.662 56.947 0 28 12 3 0 0 0 0.07087 1 31627 31627 39.95 13.066 1 3250700 67096 5773 44606 45615 78397 78397 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7960205078125 2 587.794275 1173.574 0.43431 0.00025528 0.055396 3.2561E-05 0.4897 0.00028785 587.794420912741 57.37 0.3985 56.88 56.668 57.066 -0.48974 46 18 3 0 0 0 0.06294 2 31118 31118;31220 41.84 7.7372 1 20866000 67097 5773 44606 45615 78398;78399 78398 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7945556640625 2 587.794275 1173.574 0.86537 0.00050866 -2.2539 -0.0013248 -1.3885 -0.00081618 587.7924696628155 56.993 0.29526 56.924 56.78 57.075 -0.068737 22 14 2 0 0 0 0.06294 1 31020 31020 41.84 14.956 1 4453200 67098 5773 44606 45615 78400 78400 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.79541015625 2 587.794275 1173.574 0.7512 0.00044155 0.00068155 4.0061E-07 0.75189 0.00044195 587.794350864682 63.118 1.1861 56.942 56.636 57.822 -6.1757 154 65 3 0 0 0 0.0087807 4 40639 40639;40771;40916;41291 106.94 57.007 1 392530000 67099 5773 44606 45615 78401;78402;78403;78404 78401 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7959594726562 2 587.794275 1173.574 1.3279 0.00078056 -0.54675 -0.00032138 0.7812 0.00045918 587.79379403203 64.371 0.636 58.196 57.955 58.591 -6.1757 50 34 2 0 0 0 0.036857 1 41732 41732 51.63 20.361 1 18161000 67100 5773 44606 45615 78405 78405 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS AL20221201_MKP_PDAC_01 4 587.7958984375 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 64.021 1 57.846 57.346 58.346 -6.1757 0 0 0 0.16996 1 41443 41443 34.402 3.7652 1 67101 5773 44606 45615 78406 78406 -0.005847673228117856 TYMKDLYQL 9 Unmodified _TYMKDLYQL_ 0 0 0 nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 nc|ENSG00000146376|Q8N392-2|ARHGAP18 MSMS AL20221201_MKP_PDAC_01 4 587.7922973632812 2 587.794275 1173.574 NaN NaN NaN NaN NaN NaN NaN 64.616 1 58.44 57.94 58.94 -6.1757 0 0 0 0.16996 1 41877 41877 34.402 10.381 1 67102 5773 44606 45615 78407 78407 -0.005847673228117856 TYMKEILRF 9 Unmodified _TYMKEILRF_ 0 0 0 ENSG00000119899|ENST00000355773|SLC17A5 ENSG00000119899|ENST00000355773|SLC17A5 ENSG00000119899|ENST00000355773|SLC17A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8867797851562 3 400.886365 1199.63727 0.55155 0.00022111 0.74106 0.00029708 1.2926 0.00051819 400.88685646624003 57.151 0.18308 57.085 56.978 57.161 -0.066036 11 8 2 0 0 0 0.085319 1 31116 31116 28.234 15.361 1 2872000 67103 3476 44607 45616 78408 78408 0.04543218185108344 TYMPHVHIL 9 Oxidation (M) _TYM(Oxidation (M))PHVHIL_ TYM(1)PHVHIL TYM(50)PHVHIL 0 0 1 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1950073242188 3 376.19531 1125.5641 -0.23677 -8.9071E-05 -0.81246 -0.00030565 -1.0492 -0.00039472 376.1951025367546 41.556 0.39041 41.253 41.067 41.458 -0.30304 51 17 5 0 0 0 0.039985 1 21970 21970 49.933 36.318 1 63322000 67104 5735 44608 45617 78409 78409 1040 0.006340894624827342 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8641662597656 3 370.863672 1109.56919 1.2124 0.00044962 -0.15907 -5.8995E-05 1.0533 0.00039063 370.8637133056657 56.603 0.34462 50.626 50.466 50.811 -5.9769 30 19 2 0 0 0 0.058206 1 36144 36144 30.637 25.74 1 25979000 67105 5735 44608 45618 78410 78410 0.018783933251143026 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8644104003906 3 370.863672 1109.56919 1.8809 0.00069755 -0.789 -0.00029261 1.0919 0.00040494 370.8636281351643 79.426 1.2276 73.25 72.68 73.908 -6.1757 183 71 3 0 0 0 0.034897 5 52031 51784;51905;52031;52167;52301 37.974 37.974 1 42435000 67106 5735 44608 45618 78411;78412;78413;78414;78415 78413 0.018783933251143026 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MSMS AL20221201_MKP_PDAC_01 4 555.79150390625 2 555.791869 1109.56919 NaN NaN NaN NaN NaN NaN NaN 79.254 1 73.079 72.579 73.579 -6.1757 0 0 0 0.036587 1 51927 51927 63.563 39.542 1 67107 5735 44608 45618 78416 78416 0.018783933251143026 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MSMS AL20221201_MKP_PDAC_01 4 555.7913208007812 2 555.791869 1109.56919 NaN NaN NaN NaN NaN NaN NaN 79.461 1 73.286 72.786 73.786 -6.1757 0 0 0 0.036587 1 52072 52072 63.563 40.827 1 67108 5735 44608 45618 78417 78417 0.018783933251143026 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MSMS AL20221201_MKP_PDAC_01 4 555.79248046875 2 555.791869 1109.56919 NaN NaN NaN NaN NaN NaN NaN 79.677 1 73.501 73.001 74.001 -6.1757 0 0 0 0.052454 1 52230 52230 56.541 28.054 1 67109 5735 44608 45618 78418 78418 0.018783933251143026 TYMPHVHIL 9 Unmodified _TYMPHVHIL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 370.863672 1109.56919 0.19883 7.3741E-05 0.31266 0.00011595 0.51149 0.00018969 370.86367974819103 50.997 0.26433 50.943 50.823 51.087 -0.053871 0.15836 0.00023435 NaN 30.637 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2529100 67110 5735 44608 45618 0.018783933251143026 TYMRFCVSL 9 Unmodified _TYMRFCVSL_ 0 0 0 REV__ENSG00000170634|ENST00000607452|ACYP2 REV__ENSG00000170634|ENST00000607452|ACYP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2698364257812 2 560.269912 1118.52527 0.65765 0.00036846 0.075198 4.2131E-05 0.73285 0.00041059 560.2698402167082 53.531 0.48538 53.531 53.263 53.748 0 38 22 2 0 0 0 0.16226 1 29595 29595 26.884 26.884 1 19990000 + 67111 22500 44609 45619 78419 78419 -0.02924959163510721 TYMRPSRCTR 10 Unmodified _TYMRPSRCTR_ 0 0 0 REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF REV__ENST00000590769.5_1_16:4927025-4930248:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.8094482421875 2 635.810799 1269.60704 NaN NaN NaN NaN NaN NaN NaN 59.104 1 58.613 58.113 59.113 -0.49079 0 0 0 0.97592 1 32150 32150 3.2813 0.54611 1 + 67112 29153 44610 45620 78420 78420 -0.016974637517250812 TYMSCYDL 8 Unmodified _TYMSCYDL_ 0 0 0 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8 MSMS AL20221201_MKP_PDAC_01 4 498.1934814453125 2 498.196079 994.377605 NaN NaN NaN NaN NaN NaN NaN 41.432 1 36.824 36.324 37.324 -4.6079 0 0 0 0.95201 1 24879 24879 10.183 2.2732 1 + 67113 18425 44611 45621 78421 78421 -0.11980895488181886 TYMVDIGKRGS 11 Unmodified _TYMVDIGKRGS_ 0 0 0 REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.8135986328125 2 613.81353 1225.61251 0.39797 0.00024428 1.0625 0.00065216 1.4604 0.00089643 613.814246963725 75.302 0.26065 75.302 75.154 75.415 0 32 13 3 0 0 0 0.71618 1 41839 41839 2.7352 0.43246 1 1613700 + 67114 27017 44612 45622 78422 78422 0.008725383117280217 TYMYEAYAPHT 11 Unmodified _TYMYEAYAPHT_ 0 0 0 REV__ENSG00000144962|ENST00000351008|SPATA16 REV__ENSG00000144962|ENST00000351008|SPATA16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.52783203125 3 449.528906 1345.56489 NaN NaN NaN NaN NaN NaN NaN 24.209 1 24.209 23.709 24.709 0 0 0 0 0.94184 1 12363 12363 0.40827 0 1 + 67115 20748 44613 45623 78423 78423 -0.0940716067914309 TYNCNCLGVCF 11 Unmodified _TYNCNCLGVCF_ 0 0 0 REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF REV__ENST00000254108.11_1_16:31202792-31202903:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.265380859375 2 618.745944 1235.47734 0.34338 0.00021246 -0.1966 -0.00012165 0.14678 9.0818E-05 618.7460280126126 66.829 0.37451 66.346 66.171 66.546 -0.48323 52 17 4 0 0 0 0.67922 1 36476 36476 6.2058 0 1 8329800 + 67116 24901 44614 45624 78424 78424 -0.130984011459077 TYNDLIKQI 9 Unmodified _TYNDLIKQI_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2780151367188 2 554.305864 1106.59717 0.55469 0.00030747 -0.92739 -0.00051406 -0.3727 -0.00020659 554.3053736945268 55.655 0.18944 55.177 55.048 55.238 -0.47798 18 8 3 0 0 0 0.19758 1 30202 30202 13.042 4.2971 1 2526800 67117 7217 44615 45625 78425 78425 0.04813994786195508 TYNEPGSQVF 10 Unmodified _TYNEPGSQVF_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2626342773438 2 571.261653 1140.50875 0.71525 0.00040859 -0.31433 -0.00017956 0.40092 0.00022903 571.2614081837672 46.492 0.48615 46.492 46.313 46.799 0 59 22 3 0 0 0 0.02847 3 25367 25333;25367;25475 79.596 47.291 1 18629000 67118 7101 44616 45626 78426;78427;78428 78427 -0.05588045524268637 TYNEPGSQVF 10 Unmodified _TYNEPGSQVF_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.2861328125 2 571.261653 1140.50875 1.3335 0.00076179 -1.4252 -0.00081418 -0.091709 -5.239E-05 571.2609172235277 53.821 0.39291 48.017 47.786 48.179 -5.8042 40 24 2 0 0 0 0.22489 1 33992 33992 18.146 7.0319 1 19216000 67119 7101 44616 45626 78429 78429 -0.05588045524268637 TYNEVSKNY 9 Unmodified _TYNEVSKNY_ 0 0 0 REV__nc|ENSG00000151746|Q96G01-4|BICD1 REV__nc|ENSG00000151746|Q96G01-4|BICD1 MSMS AL20221201_MKP_PDAC_01 4 559.2620239257812 2 559.261653 1116.50875 NaN NaN NaN NaN NaN NaN NaN 52.103 1 46.368 45.868 46.868 -5.7345 0 0 0 0.074615 1 32867 32867 49.933 7.8384 1 + 67120 21089 44617 45627 78430 78430 -0.044840455242592725 TYNFRSPF 8 Unmodified _TYNFRSPF_ 0 0 0 REV__ENST00000311117.7_1_7:104746436-104747131:+|nuORF REV__ENST00000311117.7_1_7:104746436-104747131:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2507934570312 2 516.250892 1030.48723 0.3465 0.00017888 -0.13891 -7.1711E-05 0.20759 0.00010717 516.250781501368 40.902 0.17672 40.599 40.482 40.659 -0.30304 13 8 2 0 0 0 0.67686 1 21657 21657 19.257 4.4187 1 3385000 + 67121 25423 44618 45628 78431 78431 -0.026793857623488293 TYNGYWNPPL 10 Unmodified _TYNGYWNPPL_ 0 0 0 ENSG00000196090|ENST00000373187|PTPRT;nc|ENSG00000196090|O14522-1|PTPRT ENSG00000196090|ENST00000373187|PTPRT ENSG00000196090|ENST00000373187|PTPRT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7885131835938 2 612.787838 1223.56112 0.045801 2.8067E-05 -0.018928 -1.1599E-05 0.026874 1.6468E-05 613.2888126393158 69.476 0.20829 68.997 68.9 69.109 -0.47903 10 8 2 0 0 0 0.68719 1 38010 38010 4.3292 0 1 982590 67122 9757 44619 45629 78432 78432 -0.04171462390650049 TYNHPSTVL 9 Unmodified _TYNHPSTVL_ 0 0 0 REV__ENSG00000100802|ENST00000299088|C14orf93 REV__ENSG00000100802|ENST00000299088|C14orf93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2619018554688 2 516.261456 1030.50836 0.39346 0.00020313 0.78511 0.00040532 1.1786 0.00060845 516.2616360570223 88.291 0.39912 87.787 87.624 88.024 -0.50423 43 17 3 0 0 0 0.41742 1 48344 48344 11.64 1.4569 1 4092500 + 67123 18109 44620 45630 78433 78433 -0.005674204534898308 TYNIFAITF 9 Unmodified _TYNIFAITF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2838134765625 2 545.2844 1088.55425 NaN NaN NaN NaN NaN NaN NaN 100.47 1 100.43 99.93 100.93 -0.039818 0 0 0 0.22437 1 55811 55811 29.082 12.139 1 67124 550 44621 45631 78434 78434 0.013512247287280843 TYNIFAITF 9 Unmodified _TYNIFAITF_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.28466796875 2 545.2844 1088.55425 0.93473 0.00050969 -0.39465 -0.0002152 0.54008 0.0002945 545.2844276554135 101.27 0.11614 95.092 95.046 95.163 -6.1757 11 6 2 0 0 0 0.028475 1 67930 67930 56.177 29.293 1 47313000 67125 550 44621 45631 78435 78435 0.013512247287280843 TYNKHINISF 10 Unmodified _TYNKHINISF_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.8838806152344 3 412.8839 1235.62987 0.13126 5.4196E-05 0.063756 2.6324E-05 0.19502 8.052E-05 412.8839278154471 42.765 0.23037 42.455 42.357 42.587 -0.31039 17 9 2 0 0 0 0.28721 1 22743 22743 28.234 14.715 1 6868600 67126 8326 44622 45632 78436 78436 0.02148201909017189 TYNKHINISF 10 Unmodified _TYNKHINISF_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8840942382812 3 412.8839 1235.62987 0.20551 8.4854E-05 0.14279 5.8956E-05 0.34831 0.00014381 412.8840470055385 42.521 0.26359 42.513 42.381 42.644 -0.0088196 21 11 3 0 0 0 0.38026 1 22755 22755 22.775 11.876 1 8697800 67127 8326 44622 45632 78437 78437 0.02148201909017189 TYNKHINISF 10 Unmodified _TYNKHINISF_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.88427734375 3 412.8839 1235.62987 0.62373 0.00025753 -0.044599 -1.8414E-05 0.57913 0.00023911 412.8837797327073 46.518 0.19456 41.437 41.317 41.512 -5.0805 38 25 2 0 0 0 0.41271 1 28702 28702 20.871 12.926 1 47222000 67128 8326 44622 45632 78438 78438 0.02148201909017189 TYNKHINISF 10 Unmodified _TYNKHINISF_ 0 0 0 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 ENSG00000173451|ENST00000308086|THAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.8226318359375 2 618.822212 1235.62987 0.23297 0.00014417 0.098524 6.0969E-05 0.3315 0.00020514 618.8220354115783 46.528 0.15646 41.447 41.345 41.502 -5.0805 30 21 2 0 0 0 0.033027 1 28711 28711 67.081 42.09 1 65001000 67129 8326 44622 45632 78439 78439 0.02148201909017189 TYNKHLFVHI 10 Unmodified _TYNKHLFVHI_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.9024658203125 3 424.568024 1270.68224 -0.07573 -3.2152E-05 -0.11182 -4.7475E-05 -0.18755 -7.9628E-05 424.5680519475409 37.542 0.29387 37.559 37.416 37.71 0.01704 30 14 3 0 0 0 0.22237 1 19923 19923 32.037 26.514 1 10359000 67130 10021 44623 45633 78440 78440 0.057727850426545047 TYNKHLFVHI 10 Unmodified _TYNKHLFVHI_ 0 0 0 nc|ENSG00000197905|Q15561-2|TEAD4;nc|ENSG00000197905|Q15561-3|TEAD4;ENSG00000197905|ENST00000359864|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 nc|ENSG00000197905|Q15561-2|TEAD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.5693664550781 3 424.568024 1270.68224 1.874 0.00079564 1.0135 0.0004303 2.8875 0.0012259 424.5683920775435 41.838 0.29875 37.23 37.062 37.36 -4.6079 29 18 2 0 0 0 0.32072 1 25191 25191 26.268 22.152 1 6767200 67131 10021 44623 45633 78441 78441 0.057727850426545047 TYNKVLHFF 9 Unmodified _TYNKVLHFF_ 0 0 0 ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000150961|ENST00000280551|SEC24D ENSG00000150961|ENST00000280551|SEC24D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2096862792969 3 390.209836 1167.60768 0.075068 2.9292E-05 -0.43782 -0.00017084 -0.36275 -0.00014155 390.20971284152716 56.553 0.40021 56.485 56.339 56.74 -0.068741 51 19 4 0 0 0 0.05483 2 30722 30722;30829 43.772 33.094 1 39328000 67132 6080 44624 45634 78442;78443 78442 0.030580222312892147 TYNKVLHFF 9 Unmodified _TYNKVLHFF_ 0 0 0 ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D ENSG00000150961|ENST00000280551|SEC24D ENSG00000150961|ENST00000280551|SEC24D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8113403320312 2 584.811116 1167.60768 0.57513 0.00033634 -2.1702 -0.0012692 -1.5951 -0.00093284 585.3105802136378 56.577 0.51725 56.509 56.339 56.857 -0.068737 53 25 3 0 0 0 0.025842 1 30830 30830 46.021 34.381 1 9321000 67133 6080 44624 45634 78444 78444 0.030580222312892147 TYNLLSERW 9 Unmodified _TYNLLSERW_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.3018188476562 2 591.301113 1180.58767 0.4264 0.00025213 0.22608 0.00013368 0.65248 0.00038581 591.3014765762894 64.886 0.25988 64.401 64.295 64.554 -0.48476 21 11 2 0 0 0 0.082934 1 35442 35442 37.075 22.236 1 1277600 67134 7600 44625 45635 78445 78445 0.004602265006496964 TYNMVLNLL 9 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ TYNM(1)VLNLL TYNM(100)VLNLL 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7891845703125 2 548.788992 1095.56343 0.46089 0.00025293 -0.14943 -8.2004E-05 0.31147 0.00017093 548.7889093633767 84.838 0.52351 84.338 84.092 84.615 -0.50005 67 23 5 0 0 0 0.0088174 1 46422 46422 103.75 57.727 1 13731000 67135 640 44626 45636 78446 78446 99 0.019472500227720957 TYNMVLNLL 9 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ TYNM(1)VLNLL TYNM(92)VLNLL 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7888793945312 2 548.788992 1095.56343 0.45356 0.00024891 -0.80966 -0.00044434 -0.3561 -0.00019543 548.7886436233983 85.363 0.38741 84.862 84.661 85.048 -0.5015 85 34 4 0 0 0 0.0082661 2 46736 46634;46736 92.491 54.517 1 15472000 67136 640 44626 45636 78447;78448 78448 99 0.019472500227720957 TYNMVLNLL 9 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ TYNM(1)VLNLL TYNM(130)VLNLL 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7876586914062 2 548.788992 1095.56343 -0.13576 -7.4505E-05 -0.37643 -0.00020658 -0.51219 -0.00028108 549.290140136305 84.24 0.22639 84.303 84.191 84.417 0.063171 17 9 2 0 0 0 0.0030184 1 46588 46588 126.57 61.331 1 24837000 67137 640 44626 45636 78449 78449 99 0.019472500227720957 TYNMVLNLL 9 Oxidation (M) _TYNM(Oxidation (M))VLNLL_ TYNM(1)VLNLL TYNM(78)VLNLL 0 0 1 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2904052734375 2 548.788992 1095.56343 -0.16645 -9.1343E-05 -0.10216 -5.6065E-05 -0.26861 -0.00014741 548.7887770477041 84.708 0.27199 84.771 84.612 84.884 0.063171 16 11 2 0 0 0 0.010818 1 46893 46893 78.149 38.192 1 26946000 67138 640 44626 45636 78450 78450 99 0.019472500227720957 TYNMVLNLL 9 Unmodified _TYNMVLNLL_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.792236328125 2 540.791535 1079.56852 0.17547 9.4892E-05 0.33641 0.00018193 0.51188 0.00027682 540.7923938650638 98.632 0.21291 98.439 98.332 98.545 -0.19321 19 6 4 0 0 0 0.5029 1 53883 53883 7.2892 0 1 923010 67139 640 44626 45637 78451 78451 0.03191553885403664 TYNMVLNLL 9 Unmodified _TYNMVLNLL_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7915649414062 2 540.791535 1079.56852 0.81475 0.00044061 0.039005 2.1094E-05 0.85375 0.0004617 540.791447681077 100.72 0.16366 94.548 94.459 94.623 -6.1757 34 11 4 0 0 0 0.0082661 1 67396 67396 92.491 50.397 1 537470000 67140 640 44626 45637 78452 78452 0.03191553885403664 TYNNTEPAVF 10 Unmodified _TYNNTEPAVF_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7711791992188 2 578.269478 1154.5244 0.32089 0.00018556 0.11377 6.5789E-05 0.43466 0.00025135 578.2698528539277 63.449 0.41711 63.449 63.315 63.732 0 37 21 2 0 0 0 0.50362 1 35359 35359 16.149 0 1 3522900 + 67141 22523 44627 45638 78453 78453 -0.046677590072249586 TYNNTEPAVF 10 Unmodified _TYNNTEPAVF_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.2684936523438 2 578.269478 1154.5244 NaN NaN NaN NaN NaN NaN NaN 63.882 1 63.397 62.897 63.897 -0.48512 0 0 0 0.59691 1 34846 34846 21.537 0 1 + 67142 22523 44627 45638 78454 78454 -0.046677590072249586 TYNPAFSRL 9 Unmodified _TYNPAFSRL_ 0 0 0 ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7769165039062 2 534.777274 1067.53999 0.59804 0.00031982 -0.26653 -0.00014253 0.33151 0.00017728 534.7771128448535 46.972 0.31323 46.635 46.462 46.775 -0.33664 38 15 3 0 0 0 0.0089732 1 25125 25125 86.332 52.229 1 19221000 67143 5780 44628 45639 78455 78455 0.008925723004722386 TYNPAFSRL 9 Unmodified _TYNPAFSRL_ 0 0 0 ENSG00000146433|ENST00000684151|TMEM181;nc|ENSG00000146433|Q9P2C4-1|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 ENSG00000146433|ENST00000684151|TMEM181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2717895507812 2 534.777274 1067.53999 1.3428 0.00071811 -1.423 -0.00076101 -0.080234 -4.2907E-05 534.7763205984562 46.656 0.40506 46.623 46.369 46.774 -0.033421 29 15 3 0 0 0 0.32235 1 25086 25086 16.149 8.8599 1 4920000 67144 5780 44628 45639 78456 78456 0.008925723004722386 TYNPEIYVI 9 Unmodified _TYNPEIYVI_ 0 0 0 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 ENSG00000164171|ENST00000296585|ITGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2902221679688 2 556.28714 1110.55973 0.69571 0.00038701 1.8797 0.0010456 2.5754 0.0014326 556.2882024564952 72.906 0.22571 72.906 72.779 73.005 0 25 10 3 0 0 0 0.19127 1 40557 40557 24.021 14.673 1 1520500 67145 7155 44629 45640 78457 78457 0.008869035205634646 TYNPVWQNRH 10 Unmodified _TYNPVWQNRH_ 0 0 0 ENST00000557238.5_1_14:47341050-47530490:-|nuORF;ENST00000555521.1_1_14:47343236-47389373:-|nuORF;nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2 ENST00000557238.5_1_14:47341050-47530490:-|nuORF ENST00000557238.5_1_14:47341050-47530490:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 438.8848571777344 3 438.882782 1313.62652 NaN NaN NaN NaN NaN NaN NaN 32.944 1 29.087 28.587 29.587 -3.8562 0 0 0 0.8634 1 18840 18840 9.544 0.56773 1 67146 15253 44630 45641 78458 78458 -0.017750481449638755 TYNPYTYGVC 10 Unmodified _TYNPYTYGVC_ 0 0 0 ENST00000337227.8_1_20:18469438-18469636:-|nuORF ENST00000337227.8_1_20:18469438-18469636:-|nuORF ENST00000337227.8_1_20:18469438-18469636:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.256103515625 2 590.752607 1179.49066 0.52635 0.00031094 1.0453 0.00061751 1.5716 0.00092845 591.2560211534143 54.783 0.14765 54.783 54.664 54.812 0 12 5 3 0 0 0 0.39779 1 30429 30429 21.747 13.153 1 1636800 67147 11924 44631 45642 78459 78459 -0.09190503770651048 TYNQHYNNL 9 Unmodified _TYNQHYNNL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7636108398438 2 583.764894 1165.51524 -0.39078 -0.00022812 1.1353 0.00066276 0.74453 0.00043463 583.7649176746494 25.507 0.22771 25.507 25.386 25.613 0 23 10 3 0 0 0 0.40476 1 13058 13058 12.241 6.9438 1 1840500 67148 9274 44632 45643 78460 78460 -0.06090107572890702 TYNQHYNNL 9 Unmodified _TYNQHYNNL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.7643432617188 2 583.764894 1165.51524 0.64536 0.00037674 -0.61237 -0.00035748 0.032995 1.9261E-05 583.7643655436813 28.48 0.33861 25.332 25.177 25.515 -3.1482 20 17 2 0 0 0 0.0090524 1 15889 15889 85.642 57.155 1 7307800 67149 9274 44632 45643 78461 78461 -0.06090107572890702 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8612976074219 3 379.861096 1136.56146 -0.44241 -0.00016805 -1.1858 -0.00045046 -1.6283 -0.00061851 379.86067454300553 29.557 0.39053 29.557 29.37 29.76 0 59 23 3 0 0 0 0.36964 2 15284 15284;15395 13.615 2.7159 1 24630000 67150 7303 44633 45644 78462;78463 78462 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2870483398438 2 569.288005 1136.56146 -0.15665 -8.9179E-05 -1.2657 -0.00072057 -1.4224 -0.00080975 569.2871921729417 29.561 0.19205 29.561 29.432 29.624 0 22 13 2 0 0 0 0.011968 1 15299 15299 74.929 46.442 1 5028100 67151 7303 44633 45644 78464 78464 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8607482910156 3 379.861096 1136.56146 0.63913 0.00024278 -0.80504 -0.0003058 -0.16592 -6.3025E-05 379.8606966241123 29.53 0.27332 29.45 29.328 29.601 -0.080429 50 16 4 0 0 0 0.20428 2 15251 15251;15354 21.59 14.223 1 99297000 67152 7303 44633 45644 78465;78466 78465 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2881469726562 2 569.288005 1136.56146 0.799 0.00045486 -0.50659 -0.0002884 0.29241 0.00016647 569.2876443915592 29.516 0.19365 29.435 29.382 29.575 -0.080431 23 11 3 0 0 0 1.5508E-06 1 15273 15273 160.69 114.67 1 19124000 67153 7303 44633 45644 78467 78467 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2874755859375 2 569.288005 1136.56146 NaN NaN NaN NaN NaN NaN NaN 29.296 1 29.326 28.826 29.826 0.030106 0 0 0 0.068038 1 15282 15282 51.63 19.324 1 67154 7303 44633 45644 78468 78468 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.787353515625 2 569.288005 1136.56146 1.0914 0.00062134 -0.23941 -0.00013629 0.85203 0.00048505 569.2877214759156 32.167 0.55587 28.311 27.977 28.533 -3.8562 95 31 4 0 0 0 0.00030554 3 18163 18163;18285;18416 148.27 100.52 1 175770000 67155 7303 44633 45644 78469;78470;78471 78469 -0.001360426708288287 TYNQKHSLF 9 Unmodified _TYNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.861328125 3 379.861096 1136.56146 1.4357 0.00054537 -0.51837 -0.00019691 0.91734 0.00034846 379.86082106367513 32.172 0.84187 28.316 27.89 28.732 -3.8562 137 47 4 0 0 0 0.07087 2 18212 18212;18343 43.982 36.373 1 533990000 67156 7303 44633 45644 78472;78473 78472 -0.001360426708288287 TYNSNLFFW 9 Unmodified _TYNSNLFFW_ 0 0 0 ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL ENSG00000106066|ENST00000265394|CPVL MSMS AL20221201_MKP_PDAC_01 4 596.2765502929688 2 596.277106 1190.53966 NaN NaN NaN NaN NaN NaN NaN 100.65 1 94.474 93.974 94.974 -6.1757 0 0 0 0.18978 1 67360 67360 41.84 13.353 1 67157 2396 44634 45645 78474 78474 -0.04798847419397134 TYNTCGSSDL 10 Unmodified _TYNTCGSSDL_ 0 0 0 ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35 ENSG00000178623|ENST00000407714|GPR35 ENSG00000178623|ENST00000407714|GPR35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7169799804688 2 530.716221 1059.41789 -0.0030135 -1.5993E-06 0.66268 0.00035169 0.65966 0.00035009 530.7165569190994 41.779 0.31403 41.779 41.626 41.94 0 37 15 3 0 0 0 0.34249 2 22535 22535;22654 24.991 6.856 1 11084000 67158 8763 44635 45646 78475;78476 78475 -0.1094425756405144 TYNTYRSNTL 10 Unmodified _TYNTYRSNTL_ 0 0 0 nc|ENSG00000167080|Q8NHY0-3|B4GALNT2;ENSG00000167080|ENST00000393354|B4GALNT2;nc|ENSG00000167080|Q8NHY0|B4GALNT2 nc|ENSG00000167080|Q8NHY0-3|B4GALNT2 nc|ENSG00000167080|Q8NHY0-3|B4GALNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.797607421875 2 616.798934 1231.58332 0.55557 0.00034268 0.038683 2.386E-05 0.59425 0.00036654 616.7981953287083 68.279 1.3839 62.103 61.517 62.901 -6.1757 118 80 2 0 0 0 0.34249 1 44458 44458 24.991 1.2012 1 61715000 67159 7567 44636 45647 78477 78477 -0.023212827129100333 TYNWMSWLL 9 Unmodified _TYNWMSWLL_ 0 0 0 nc|ENSG00000101307|Q5TFQ8|SIRPB1;ENST00000448467.1_1_22:30939341-30940067:+|nuORF;ENSG00000101307|ENST00000381605|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA nc|ENSG00000101307|Q5TFQ8|SIRPB1 nc|ENSG00000101307|Q5TFQ8|SIRPB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.2880859375 2 607.289159 1212.56377 NaN NaN NaN NaN NaN NaN NaN 59.564 1 59.073 58.573 59.573 -0.49079 0 0 0 0.7243 1 32409 32409 8.5933 1.304 1 67160 16091 44637 45648 78478 78478 -0.034013302573612236 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2738037109375 2 602.277106 1202.53966 0.65793 0.00039625 -1.265 -0.00076188 -0.60708 -0.00036563 602.2759405845844 54.487 0.28931 54.487 54.352 54.641 0 24 12 3 0 0 0 0.052168 1 30244 30244 44.407 30.501 1 2191000 67161 2910 44638 45649 78479 78479 -0.053508474193904476 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2760009765625 2 602.277106 1202.53966 0.28136 0.00016946 0.42538 0.0002562 0.70675 0.00042566 602.2772133674881 55.123 0.41149 54.645 54.45 54.861 -0.47798 57 19 4 0 0 0 0.016184 2 29837 29837;29939 67.344 43.323 1 29244000 67162 2910 44638 45649 78480;78481 78480 -0.053508474193904476 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.2769165039062 2 602.277106 1202.53966 0.22843 0.00013758 0.010305 6.2067E-06 0.23874 0.00014379 602.2768441938168 54.829 0.30011 54.762 54.6 54.9 -0.066936 30 14 3 0 0 0 0.087258 1 29755 29755 36.044 22.138 1 5729900 67163 2910 44638 45649 78482 78482 -0.053508474193904476 TYNYPVHYF 9 Unmodified _TYNYPVHYF_ 0 0 0 nc|ENSG00000112697|Q9NV96-3|TMEM30A;nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A nc|ENSG00000112697|Q9NV96-3|TMEM30A MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.2770385742188 2 602.277106 1202.53966 0.45265 0.00027262 0.39769 0.00023952 0.85033 0.00051214 602.2772386421649 60.534 0.67326 54.386 54.104 54.778 -6.1478 88 35 3 0 0 0 0.016184 2 38852 38852;38977 67.344 43.323 1 185310000 67164 2910 44638 45649 78483;78484 78483 -0.053508474193904476 TYPAEFVFR 9 Unmodified _TYPAEFVFR_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2874145507812 2 565.287474 1128.5604 0.92551 0.00052318 0.96875 0.00054762 1.8943 0.0010708 565.2878587307149 56.884 0.41661 56.816 56.578 56.995 -0.068741 35 20 2 0 0 0 0.23158 1 30918 30918 20.454 0 1 2852600 + 67165 20877 44639 45650 78485 78485 0.001257429602674165 TYPAELNNI 9 Unmodified _TYPAELNNI_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1034.5166015625 1 1034.5153 1033.50803 -0.10806 -0.00011179 -1.1989 -0.0012403 -1.3069 -0.001352 1034.5141202346215 53.455 0.30199 53.455 53.304 53.606 0 34 13 3 0 0 0 2.8664E-10 1 29584 29584 171.09 116.31 1 13351000 67166 2437 44640 45651 78486 78486 -0.007388401733351202 TYPAELNNI 9 Unmodified _TYPAELNNI_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7608642578125 2 517.761289 1033.50803 0.58667 0.00030375 -0.886 -0.00045874 -0.29933 -0.00015498 517.7608064778796 53.47 0.42427 53.47 53.281 53.705 0 71 19 5 0 0 0 0.095405 2 29618 29618;29734 34.102 10.082 1 159630000 67167 2437 44640 45651 78487;78488 78487 -0.007388401733351202 TYPAELNNI 9 Unmodified _TYPAELNNI_ 0 0 0 ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR ENSG00000106546|ENST00000242057|AHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7598266601562 2 517.761289 1033.50803 1.0862 0.00056241 -1.9885 -0.0010296 -0.90231 -0.00046718 517.7596026192383 61.25 0.56767 55.102 54.827 55.395 -6.1478 84 28 4 0 0 0 0.32871 1 39459 39459 15.847 0 1 261020000 67168 2437 44640 45651 78489 78489 -0.007388401733351202 TYPDDTYRL 9 Unmodified _TYPDDTYRL_ 0 0 0 ENSG00000120798|ENST00000333003|NR2C1 ENSG00000120798|ENST00000333003|NR2C1 ENSG00000120798|ENST00000333003|NR2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7701416015625 2 572.269478 1142.5244 -0.15774 -9.027E-05 -0.52436 -0.00030008 -0.6821 -0.00039035 572.7708375820995 41.509 0.50008 41.509 41.304 41.804 0 46 25 2 0 0 0 0.18255 2 22458 22342;22458 32.786 16.939 1 12336000 67169 3540 44641 45652 78490;78491 78491 -0.04115759007231645 TYPDVNNSI 9 Unmodified _TYPDVNNSI_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.743408203125 2 511.743096 1021.47164 -0.0721 -3.6897E-05 -0.90418 -0.00046271 -0.97628 -0.00049961 511.7430458023488 41.778 0.80577 41.778 41.556 42.362 0 126 41 5 0 0 0 0.015445 3 22569 22459;22569;22675 68.081 28.131 1 218000000 67170 3670 44642 45653 78492;78493;78494 78493 -0.03823717070042676 TYPDVNNSI 9 Unmodified _TYPDVNNSI_ 0 0 0 nc|ENSG00000122958|O75436-2|VPS26A;ENSG00000122958|ENST00000263559|VPS26A nc|ENSG00000122958|O75436-2|VPS26A nc|ENSG00000122958|O75436-2|VPS26A MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7440795898438 2 511.743096 1021.47164 0.49315 0.00025236 0.080869 4.1384E-05 0.57401 0.00029375 511.743099136715 49.042 0.59964 43.646 43.318 43.918 -5.3961 96 38 3 0 0 0 0.018301 3 30454 30454;30584;30724 65.235 39.836 1 282220000 67171 3670 44642 45653 78495;78496;78497 78495 -0.03823717070042676 TYPEGLEVLHF 11 Unmodified _TYPEGLEVLHF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.8301391601562 2 652.829703 1303.64485 -0.029532 -1.9279E-05 1.1266 0.00073551 1.0971 0.00071623 652.8304161162943 79.38 0.38597 79.38 79.181 79.566 0 43 15 4 0 0 0 0.16973 2 44055 44055;44155 34.402 25.656 1 2639200 67172 6151 44643 45654 78498;78499 78498 0.005176489863742972 TYPEGLEVLHF 11 Unmodified _TYPEGLEVLHF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.8305053710938 2 652.829703 1303.64485 0.94413 0.00061636 -0.37401 -0.00024417 0.57012 0.00037219 652.8294400102109 79.882 0.44998 79.393 79.164 79.614 -0.48932 57 18 4 0 0 0 0.12183 2 43785 43680;43785 39.95 30.567 1 13300000 67173 6151 44643 45654 78500;78501 78501 0.005176489863742972 TYPEGLEVLHF 11 Unmodified _TYPEGLEVLHF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.8292236328125 2 652.829703 1303.64485 0.61512 0.00040157 -2.6708 -0.0017436 -2.0557 -0.001342 653.3284940877079 79.282 0.23486 79.337 79.21 79.445 0.05497 11 8 2 0 0 0 0.16973 1 43823 43823 34.402 27.679 1 3737300 67174 6151 44643 45654 78502 78502 0.005176489863742972 TYPEGLEVLHF 11 Unmodified _TYPEGLEVLHF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.830078125 2 652.829703 1303.64485 0.64057 0.00041818 0.41431 0.00027047 1.0549 0.00068865 652.8300292704082 92.671 0.80398 86.496 86.083 86.887 -6.1757 125 49 3 0 0 0 0.012451 4 61292 61038;61164;61292;61425 65.235 52.193 1 58933000 67175 6151 44643 45654 78503;78504;78505;78506 78505 0.005176489863742972 TYPENWRAF 9 Unmodified _TYPENWRAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2799072265625 2 592.28018 1182.54581 0.46084 0.00027295 -1.5908 -0.00094218 -1.1299 -0.00066923 592.2791809367696 53.824 0.49306 53.358 53.133 53.626 -0.46664 60 24 3 0 0 0 0.03568 2 29136 29136;29248 52.268 19.963 1 18682000 67176 10781 44644 45655 78507;78508 78507 -0.03816329187861811 TYPENWRAF 9 Unmodified _TYPENWRAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2806396484375 2 592.28018 1182.54581 1.0044 0.00059487 1.3388 0.00079297 2.3432 0.0013878 592.2810967589254 59.152 0.83418 53.078 52.702 53.536 -6.0745 113 45 3 0 0 0 0.022193 3 38004 37871;38004;38138 61.357 21.4 1 139750000 67177 10781 44644 45655 78509;78510;78511 78510 -0.03816329187861811 TYPENWRAF 9 Unmodified _TYPENWRAF_ 0 0 0 ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF ENSG00000254772|ENST00000329251|EEF1G ENSG00000254772|ENST00000329251|EEF1G MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 592.28018 1182.54581 -0.34467 -0.00020414 0.36445 0.00021586 0.019781 1.1716E-05 592.2802881701122 53.478 0.19134 53.415 53.326 53.517 -0.063423 0.1315 -0.00013134 NaN 61.357 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4171900 67178 10781 44644 45655 -0.03816329187861811 TYPEVKNKL 9 Unmodified _TYPEVKNKL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;ENST00000504558.1_1_5:75967701-75969415:+|nuORF ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5412902832031 3 364.541363 1090.60226 -0.54466 -0.00019855 0.35411 0.00012909 -0.19055 -6.9462E-05 364.5415092233199 26.584 0.48032 26.584 26.323 26.803 0 74 22 4 0 0 0 0.047714 2 13685 13589;13685 45.74 28.297 1 9262000 67179 5714 44645 45656 78512;78513 78513 0.06058298648804339 TYPEVKNKL 9 Unmodified _TYPEVKNKL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;ENST00000504558.1_1_5:75967701-75969415:+|nuORF ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.3078002929688 2 546.308406 1090.60226 -0.36409 -0.0001989 0.17733 9.6878E-05 -0.18676 -0.00010203 546.3083642348133 26.558 0.37529 26.558 26.386 26.761 0 32 17 3 0 0 0 0.31356 1 13655 13655 22.736 9.2284 1 1361700 67180 5714 44645 45656 78514 78514 0.06058298648804339 TYPEVKNKL 9 Unmodified _TYPEVKNKL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;ENST00000504558.1_1_5:75967701-75969415:+|nuORF ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5421447753906 3 364.541363 1090.60226 1.2249 0.00044654 0.13841 5.0457E-05 1.3633 0.000497 364.5414601009916 29.728 0.34853 26.427 26.257 26.606 -3.3016 33 18 2 0 0 0 0.0093064 2 16672 16672;16831 83.429 37.689 1 63603000 67181 5714 44645 45656 78515;78516 78515 0.06058298648804339 TYPEVKNKL 9 Unmodified _TYPEVKNKL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF;ENST00000504558.1_1_5:75967701-75969415:+|nuORF ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MSMS AL20221201_MKP_PDAC_01 4 546.30810546875 2 546.308406 1090.60226 NaN NaN NaN NaN NaN NaN NaN 29.793 1 26.492 25.992 26.992 -3.3016 0 0 0 0.14754 1 16778 16778 47.749 17.112 1 67182 5714 44645 45656 78517 78517 0.06058298648804339 TYPEVLKEF 9 Unmodified _TYPEVLKEF_ 0 0 0 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.29541015625 2 563.294965 1124.57538 0.41615 0.00023442 0.6798 0.00038293 1.096 0.00061735 563.2945863493406 61.356 0.62265 61.356 60.907 61.529 0 61 27 3 0 0 0 0.2546 1 34240 34240 19.362 3.5148 1 1602900 67183 8727 44646 45657 78518 78518 0.018071900376071426 TYPEVLKEF 9 Unmodified _TYPEVLKEF_ 0 0 0 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 ENSG00000178074|ENST00000319974|C2orf69 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.294965 1124.57538 0.63142 0.00035568 -1.4414 -0.00081191 -0.80994 -0.00045624 563.2942323114469 61.962 0.14255 61.474 61.387 61.529 -0.48764 0.059153 -0.0011814 NaN 19.362 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1050700 67184 8727 44646 45657 0.018071900376071426 TYPFPETRF 9 Unmodified _TYPFPETRF_ 0 0 0 ENSG00000168070|ENST00000301896|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN ENSG00000168070|ENST00000301896|MAJIN ENSG00000168070|ENST00000301896|MAJIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.2853393554688 2 579.284931 1156.55531 0.70791 0.00041008 0.98887 0.00057284 1.6968 0.00098292 579.2853242867308 54.892 0.57692 54.824 54.541 55.117 -0.068741 68 28 4 0 0 0 0.23158 1 29837 29837 20.454 0 1 17926000 67185 7715 44647 45658 78519 78519 -0.01670560902334728 TYPFSSVQLVL 11 Unmodified _TYPFSSVQLVL_ 0 0 0 REV__ENST00000578955.1_1_18:19057140-19088617:+|nuORF REV__ENST00000578955.1_1_18:19057140-19088617:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.5641174316406 3 418.564056 1252.67034 NaN NaN NaN NaN NaN NaN NaN 64.7 1 64.7 64.2 65.2 0 0 0 0 0.93933 1 36086 36086 1.2148 0.021489 1 + 67186 20535 44648 45659 78520 78520 0.05411123508815763 TYPGQPHPAL 10 Unmodified _TYPGQPHPAL_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7757568359375 2 540.777274 1079.53999 -0.42621 -0.00023048 -0.883 -0.00047751 -1.3092 -0.00070799 540.7767165780914 34.666 0.21252 34.666 34.54 34.753 0 24 10 3 0 0 0 0.31022 1 18250 18250 26.884 12.045 1 3978200 67187 3028 44649 45660 78521 78521 0.003405723004561878 TYPIKTPTF 9 Unmodified _TYPIKTPTF_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3;ENST00000463254.1_1_2:166615181-166618484:-|nuORF ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2927856445312 2 534.292225 1066.5699 0.40998 0.00021905 -0.22569 -0.00012058 0.18429 9.8467E-05 534.2921602164578 53.561 0.51937 53.109 52.823 53.342 -0.45173 69 25 4 0 0 0 0.028475 2 28905 28905;29009 56.177 35.723 1 24527000 67188 3112 44650 45661 78522;78523 78522 0.03927511245797177 TYPIKTPTF 9 Unmodified _TYPIKTPTF_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3;ENST00000463254.1_1_2:166615181-166618484:-|nuORF ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2926635742188 2 534.292225 1066.5699 0.13501 7.2136E-05 0.23342 0.00012472 0.36844 0.00019685 534.2925214503169 53.159 0.49866 53.096 52.845 53.344 -0.063423 39 24 2 0 0 0 0.028475 2 28810 28810;28915 56.177 32.156 1 13288000 67189 3112 44650 45661 78524;78525 78524 0.03927511245797177 TYPIKTPTF 9 Unmodified _TYPIKTPTF_ 0 0 0 ENSG00000115339|ENST00000392701|GALNT3;ENST00000463254.1_1_2:166615181-166618484:-|nuORF ENSG00000115339|ENST00000392701|GALNT3 ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2913818359375 2 534.292225 1066.5699 1.0439 0.00055774 -0.38104 -0.00020358 0.66285 0.00035416 534.2919594167402 59.274 0.65668 53.2 52.835 53.492 -6.0745 70 36 2 0 0 0 0.028475 2 37891 37891;38032 56.177 32.156 1 245080000 67190 3112 44650 45661 78526;78527 78526 0.03927511245797177 TYPKGFYCS 9 Unmodified _TYPKGFYCS_ 0 0 0 ENSG00000122756|ENST00000378980|CNTFR ENSG00000122756|ENST00000378980|CNTFR ENSG00000122756|ENST00000378980|CNTFR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.24560546875 2 533.239135 1064.46372 0.36978 0.00019718 -1.4812 -0.00078986 -1.1115 -0.00059268 533.2399086871259 22.602 0.21172 19.824 19.722 19.933 -2.7784 24 13 3 0 0 0 0.19205 1 12143 12143 14.838 12.779 1 8280400 67191 3659 44651 45662 78528 78528 -0.06593567591175997 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5626525878906 3 378.562099 1132.66447 0.67787 0.00025662 -0.28687 -0.0001086 0.391 0.00014802 378.56194958436265 52.337 0.45916 52.278 52.087 52.546 -0.058918 81 22 5 0 0 0 0.14594 2 28291 28291;28398 28.495 23.092 1 57405000 67192 10710 44652 45663 78529;78530 78529 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.33984375 2 567.33951 1132.66447 0.87239 0.00049494 -0.40283 -0.00022854 0.46956 0.0002664 567.3391861364341 52.358 0.37934 52.299 52.107 52.486 -0.058918 61 18 4 0 0 0 0.022461 2 28321 28321;28422 57.722 43.816 1 38452000 67193 10710 44652 45663 78531;78532 78531 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5623168945312 3 378.562099 1132.66447 1.4088 0.0005333 -0.2647 -0.0001002 1.1441 0.0004331 378.5619140077341 57.226 0.51925 51.198 50.924 51.443 -6.0275 69 29 3 0 0 0 0.20507 2 36526 36526;36656 22.658 14.503 1 122750000 67194 10710 44652 45663 78533;78534 78533 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3399047851562 2 567.33951 1132.66447 1.0705 0.00060735 0.86527 0.0004909 1.9358 0.0010983 567.8419479557152 57.207 0.4553 51.179 50.988 51.443 -6.0275 58 25 3 0 0 0 0.080011 2 36657 36527;36657 47.594 36.1 1 59830000 67195 10710 44652 45663 78535;78536 78536 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5626525878906 3 378.562099 1132.66447 1.6037 0.00060712 -0.059348 -2.2467E-05 1.5444 0.00058465 378.5620053436492 71.682 0.3522 65.506 65.324 65.676 -6.1757 31 18 2 0 0 0 0.37578 1 46802 46802 13.615 10.543 1 22488000 67196 10710 44652 45663 78537 78537 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5625305175781 3 378.562099 1132.66447 1.5284 0.00057861 -0.61385 -0.00023238 0.9146 0.00034623 378.5616242921439 71.999 0.31561 65.823 65.604 65.919 -6.1757 24 17 2 0 0 0 0.37578 2 46979 46979;47123 13.615 8.5673 1 18958000 67197 10710 44652 45663 78538;78539 78538 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20221201_MKP_PDAC_01 4 378.5621948242188 3 378.562099 1132.66447 NaN NaN NaN NaN NaN NaN NaN 70.531 1 64.355 63.855 64.855 -6.1757 0 0 0 0.16551 1 46094 46094 34.932 14.351 1 67198 10710 44652 45663 78540 78540 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20221201_MKP_PDAC_01 4 378.5622863769531 3 378.562099 1132.66447 NaN NaN NaN NaN NaN NaN NaN 70.731 1 64.556 64.056 65.056 -6.1757 0 0 0 0.17798 1 46229 46229 33.445 11.645 1 67199 10710 44652 45663 78541 78541 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20221201_MKP_PDAC_01 4 378.5625915527344 3 378.562099 1132.66447 NaN NaN NaN NaN NaN NaN NaN 70.92 1 64.744 64.244 65.244 -6.1757 0 0 0 0.16551 1 46353 46353 34.932 19.193 1 67200 10710 44652 45663 78542 78542 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20221201_MKP_PDAC_01 4 378.5625305175781 3 378.562099 1132.66447 NaN NaN NaN NaN NaN NaN NaN 71.111 1 64.935 64.435 65.435 -6.1757 0 0 0 0.348 1 46475 46475 22.658 6.9195 1 67201 10710 44652 45663 78543 78543 0.10344069787788612 TYPKIWVKV 9 Unmodified _TYPKIWVKV_ 0 0 0 nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB nc|ENSG00000243649|P00751-2|CFB nc|ENSG00000243649|P00751-2|CFB MSMS AL20221201_MKP_PDAC_01 4 378.5627136230469 3 378.562099 1132.66447 NaN NaN NaN NaN NaN NaN NaN 71.351 1 65.175 64.675 65.675 -6.1757 0 0 0 0.17798 1 46631 46631 33.445 19.227 1 67202 10710 44652 45663 78544 78544 0.10344069787788612 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7474670410156 2 509.74765 1017.48075 0.44717 0.00022794 0.20219 0.00010307 0.64936 0.00033101 509.7475935938799 68.871 0.38605 68.871 68.717 69.103 0 36 16 3 0 0 0 0.55032 1 38398 38398 30.225 9.3536 1 1330000 67203 1899 44653 45664 78545 78545 -0.027293237137314463 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7481079101562 2 509.74765 1017.48075 -0.23108 -0.00011779 1.446 0.00073709 1.2149 0.0006193 509.74823585359167 69.386 0.57436 68.907 68.628 69.203 -0.47903 71 24 4 0 0 0 0.3408 2 37884 37884;37993 50.855 20.63 1 6210400 67204 1899 44653 45664 78546;78547 78546 -0.027293237137314463 TYPNTYIF 8 Unmodified _TYPNTYIF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7493896484375 2 509.74765 1017.48075 0.6369 0.00032466 0.4696 0.00023938 1.1065 0.00056403 509.74796156189166 75.506 0.8075 69.331 68.89 69.698 -6.1757 108 43 3 0 0 0 0.42423 1 49574 49574 42.095 15.211 1 36823000 67205 1899 44653 45664 78548 78548 -0.027293237137314463 TYPNTYIFDLF 11 Unmodified _TYPNTYIFDLF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.3375854492188 2 697.337361 1392.66017 -0.22848 -0.00015933 0.69133 0.00048209 0.46285 0.00032276 697.3375344988865 101.14 0.10353 101.1 101.03 101.14 -0.04216 12 3 4 0 0 0 0.10451 1 56203 56203 41.956 35.232 1 22666000 67206 1899 44654 45665 78549 78549 -0.020454842164326692 TYPNTYIFDLF 11 Unmodified _TYPNTYIFDLF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 697.3382568359375 2 697.337361 1392.66017 0.33113 0.00023091 0.52026 0.0003628 0.85139 0.00059371 697.3376643320295 101.61 0.15222 95.433 95.351 95.503 -6.1757 26 7 4 0 0 0 0.21511 1 68187 68187 31.268 19.028 1 113950000 67207 1899 44654 45665 78550 78550 -0.020454842164326692 TYPPFVNFF 9 Unmodified _TYPPFVNFF_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2789916992188 2 566.279118 1130.54368 1.5285 0.00086557 -1.0793 -0.00061117 0.44923 0.00025439 566.2784562804368 100.45 0.13494 100.42 100.35 100.48 -0.036301 7 4 2 0 0 0 0.2143 1 55823 55823 21.747 8.2388 1 3361100 67208 3031 44655 45666 78551 78551 -0.01636757925666643 TYPPFVNFF 9 Unmodified _TYPPFVNFF_ 0 0 0 nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 nc|ENSG00000114346|Q9H8V3-2|ECT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2798461914062 2 566.279118 1130.54368 1.2053 0.00068254 -0.01842 -1.0431E-05 1.1869 0.00067211 566.2785323484225 101.26 0.074593 95.082 95.032 95.107 -6.1757 14 4 4 0 0 0 0.019303 1 67921 67921 64.236 43.783 1 35436000 67209 3031 44655 45666 78552 78552 -0.01636757925666643 TYPPSYNLTF 10 Unmodified _TYPPSYNLTF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.791015625 2 601.790047 1201.56554 0.17578 0.00010578 -0.050336 -3.0292E-05 0.12544 7.5491E-05 601.7897619957262 70.446 0.37232 69.969 69.643 70.015 -0.47735 42 21 3 0 0 0 0.38092 2 38489 38374;38489 22.736 5.6234 1 3723700 67210 6006 44656 45667 78553;78554 78554 -0.027179979677839583 TYPPSYNLTF 10 Unmodified _TYPPSYNLTF_ 0 0 0 ENSG00000149418|ENST00000278742|ST14;ENST00000524718.5_1_11:130059967-130066600:+|nuORF ENSG00000149418|ENST00000278742|ST14 ENSG00000149418|ENST00000278742|ST14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7904663085938 2 601.790047 1201.56554 0.3936 0.00023686 1.0301 0.0006199 1.4237 0.00085676 601.7904327383187 70.719 1.2692 70.242 69.995 71.265 -0.47735 158 71 3 0 0 0 0.027759 6 38706 38706;38814;38915;39015;39119;39240 69.105 40.023 1 4698000 67211 6006 44656 45667 78555;78556;78557;78558;78559;78560 78555 -0.027179979677839583 TYPQGFKLW 9 Unmodified _TYPQGFKLW_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.298828125 2 570.297842 1138.58113 0.30078 0.00017153 0.13295 7.5819E-05 0.43373 0.00024735 570.2979584945826 69.812 0.44321 69.843 69.592 70.035 0.030914 69 22 4 0 0 0 0.070838 2 38313 38313;38427 39.957 25.119 1 11014000 67212 8158 44657 45668 78561;78562 78561 0.017383333399493495 TYPQGFKLW 9 Unmodified _TYPQGFKLW_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2974243164062 2 570.297842 1138.58113 1.4811 0.00084469 0.37456 0.00021361 1.8557 0.0010583 570.2978890512236 79.356 0.7232 73.18 72.712 73.435 -6.1757 58 40 2 0 0 0 0.070838 3 52024 51768;51897;52024 39.957 23.136 1 15826000 67213 8158 44657 45668 78563;78564;78565 78565 0.017383333399493495 TYPQGFKLW 9 Unmodified _TYPQGFKLW_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 ENSG00000171903|ENST00000402119|CYP4F11 MSMS AL20221201_MKP_PDAC_01 4 570.2965698242188 2 570.297842 1138.58113 NaN NaN NaN NaN NaN NaN NaN 78.828 1 72.653 72.153 73.153 -6.1757 0 0 0 0.17247 1 51625 51625 34.102 14.845 1 67214 8158 44657 45668 78566 78566 0.017383333399493495 TYPQGFKVW 9 Unmodified _TYPQGFKVW_ 0 0 0 nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000592279.6_1_19:15751729-15757926:+|nuORF;ENST00000608168.1_1_19:16003249-16008861:-|nuORF nc|ENSG00000186529|Q08477-2|CYP4F3 nc|ENSG00000186529|Q08477-2|CYP4F3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2882080078125 2 563.290017 1124.56548 NaN NaN NaN NaN NaN NaN NaN 60.189 1 59.698 59.198 60.198 -0.49079 0 0 0 0.50124 1 32767 32767 15.847 7.937 1 67215 16462 44658 45669 78567 78567 0.008180468229056714 TYPQGFKVW 9 Unmodified _TYPQGFKVW_ 0 0 0 nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000592279.6_1_19:15751729-15757926:+|nuORF;ENST00000608168.1_1_19:16003249-16008861:-|nuORF nc|ENSG00000186529|Q08477-2|CYP4F3 nc|ENSG00000186529|Q08477-2|CYP4F3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.2905883789062 2 563.290017 1124.56548 0.69238 0.00039001 0.20565 0.00011584 0.89803 0.00050585 563.2900048461396 59.803 0.59574 59.75 59.44 60.036 -0.053059 103 29 5 0 0 0 0.042911 3 32593 32484;32593;32695 48.346 34.44 1 53908000 67216 16462 44658 45669 78568;78569;78570 78569 0.008180468229056714 TYPQGFKVW 9 Unmodified _TYPQGFKVW_ 0 0 0 nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2;ENST00000592279.6_1_19:15751729-15757926:+|nuORF;ENST00000608168.1_1_19:16003249-16008861:-|nuORF nc|ENSG00000186529|Q08477-2|CYP4F3 nc|ENSG00000186529|Q08477-2|CYP4F3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2909545898438 2 563.290017 1124.56548 0.67947 0.00038274 -0.29438 -0.00016582 0.38508 0.00021691 563.2900668072432 65.207 1.5789 59.031 58.666 60.245 -6.1757 212 90 5 0 0 0 0.06187 6 42312 42173;42312;42445;42606;42744;42980 42.095 30.454 1 155900000 67217 16462 44658 45669 78571;78572;78573;78574;78575;78576 78572 0.008180468229056714 TYPQTPLHL 9 Unmodified _TYPQTPLHL_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2896118164062 2 535.287474 1068.5604 0.81755 0.00043762 0.77886 0.00041691 1.5964 0.00085454 535.2881421310095 59.474 0.61734 53.359 53.11 53.727 -6.1147 78 34 4 0 0 0 0.026094 2 38173 38173;38293 57.471 25.166 1 70795000 67218 4371 44659 45670 78577;78578 78577 0.028857429603021956 TYPRELKHIF 10 Unmodified _TYPRELKHIF_ 0 0 0 ENSG00000125485|ENST00000372159|DDX31;nc|ENSG00000125485|Q9H8H2-2|DDX31;nc|ENSG00000125485|Q9H8H2|DDX31 ENSG00000125485|ENST00000372159|DDX31 ENSG00000125485|ENST00000372159|DDX31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2430725097656 3 435.243429 1302.70846 0.32863 0.00014303 -1.0831 -0.00047142 -0.75448 -0.00032838 435.57749164177216 38.584 0.21916 38.595 38.479 38.698 0.011452 26 10 3 0 0 0 0.65891 1 20514 20514 7.4771 3.3604 1 5516300 67219 3857 44660 45671 78579 78579 0.06921054214103606 TYPRSCCKS 9 Unmodified _TYPRSCCKS_ 0 0 0 nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16 nc|ENSG00000130167|Q9UKR8-3|TSPAN16 nc|ENSG00000130167|Q9UKR8-3|TSPAN16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7344360351562 2 522.733694 1043.45284 0.058733 3.0702E-05 1.1962 0.00062531 1.255 0.00065601 522.7343020006842 41.776 0.3844 41.776 41.573 41.957 0 48 19 3 0 0 0 0.20428 1 22629 22629 22.736 4.6013 1 16313000 67220 4184 44661 45672 78580 78580 -0.0671529323710729 TYPRSLCRF 9 Carbamidomethyl (C) _TYPRSLC(Carbamidomethyl (C))RF_ TYPRSLC(1)RF TYPRSLC(50)RF 0 1 0 ENST00000549253.5_1_18:3449645-3457414:+|nuORF;ENST00000345133.9_1_18:3451757-3457414:+|nuORF ENST00000549253.5_1_18:3449645-3457414:+|nuORF ENST00000549253.5_1_18:3449645-3457414:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3042602539062 2 600.303133 1198.59171 0.56442 0.00033882 -0.36973 -0.00022195 0.19469 0.00011688 600.3030044041992 37.599 0.48652 33.23 32.987 33.473 -4.3689 67 28 3 0 0 0 0.040683 2 21976 21976;22100 49.554 26.818 1 40922000 67221 12025 44662 45673 78581;78582 78581 970 0.00035992722723676707 TYPSQLPSL 9 Unmodified _TYPSQLPSL_ 0 0 0 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 ENSG00000130035|ENST00000252318|GALNT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2661743164062 2 503.266207 1004.51786 NaN NaN NaN NaN NaN NaN NaN 63.128 1 62.642 62.142 63.142 -0.48617 0 0 0 0.15549 1 34425 34425 36.127 9.2434 1 67222 4173 44663 45674 78583 78583 0.01578347832048621 TYPTRKPF 8 Unmodified _TYPTRKPF_ 0 0 0 ENSG00000197140|ENST00000379907|ADAM32 ENSG00000197140|ENST00000379907|ADAM32 ENSG00000197140|ENST00000379907|ADAM32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2778930664062 2 505.276909 1008.53927 1.1445 0.00057826 -0.94234 -0.00047614 0.20212 0.00010212 505.2763292647132 53.615 1.2649 47.811 47.419 48.684 -5.8042 288 76 5 0 0 0 0.57045 1 34328 34328 28.487 5.3384 1 5695600000 67223 9913 44664 45675 78584 78584 0.03533777651421133 TYPVAHWHL 9 Unmodified _TYPVAHWHL_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.193603515625 3 375.194298 1122.56106 1.3938 0.00052296 -0.58985 -0.00022131 0.80398 0.00030165 375.19407468462225 50.214 0.32402 50.165 49.966 50.291 -0.048828 25 15 2 0 0 0 0.16776 1 27130 27130 24.021 19.691 1 1457900 67224 4738 44665 45676 78585 78585 0.004685823999807326 TYPVAHWHL 9 Unmodified _TYPVAHWHL_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 375.194298 1122.56106 0.86987 0.00032637 -1.031 -0.00038681 -0.16108 -6.0438E-05 375.19365263829536 50.548 0.16463 50.134 50.072 50.236 -0.41351 -0.015456 -0.00041272 NaN 24.021 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 896150 67225 4738 44665 45676 0.004685823999807326 TYPVPHYSFF 10 Unmodified _TYPVPHYSFF_ 0 0 0 ENSG00000165209|ENST00000348403|STRBP;nc|ENSG00000165209|Q96SI9-2|STRBP ENSG00000165209|ENST00000348403|STRBP ENSG00000165209|ENST00000348403|STRBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.3013916015625 2 629.300581 1256.58661 0.81758 0.0005145 1.6058 0.0010105 2.4234 0.0015251 629.3011992686694 71.603 0.54811 71.643 71.386 71.934 0.039024 38 25 2 0 0 0 0.44373 1 39455 39455 19.257 12.534 1 1880300 67226 7309 44666 45677 78586 78586 -0.03141987868252727 TYPVVLITF 9 Unmodified _TYPVVLITF_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.8058471679688 2 526.804968 1051.59538 3.6846 0.0019411 -2.2731 -0.0011975 1.4115 0.00074361 526.803560602257 99.429 0.15784 99.393 99.294 99.452 -0.036301 8 5 2 0 0 0 0.06187 1 55244 55244 42.095 18.946 1 1764100 67227 3069 44667 45678 78587 78587 0.07164985768213228 TYPVVLITF 9 Unmodified _TYPVVLITF_ 0 0 0 nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2;ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 nc|ENSG00000114859|P51788-5|CLCN2 MSMS AL20221201_MKP_PDAC_01 4 526.8067016601562 2 526.804968 1051.59538 NaN NaN NaN NaN NaN NaN NaN 100.97 1 94.798 94.298 95.298 -6.1757 0 0 0 0.029091 1 67659 67659 67.344 25.249 1 67228 3069 44667 45678 78588 78588 0.07164985768213228 TYQAMVHEL 9 Oxidation (M) _TYQAM(Oxidation (M))VHEL_ TYQAM(1)VHEL TYQAM(42)VHEL 0 0 1 nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF nc|ENSG00000136631|Q9NRW7-2|VPS45;ENST00000477558.1_1_1:150049710-150054979:+|nuORF nc|ENSG00000136631|Q9NRW7-2|VPS45 MSMS AL20221201_MKP_PDAC_01 4 554.7359008789062 2 554.260599 1106.50665 NaN NaN NaN NaN NaN NaN NaN 37.179 1 32.895 32.395 33.395 -4.2835 0 0 0 0.10759 1 21797 21797 41.84 11.615 1 67229 4839;13999 44668 45679 78589 78589 874 -0.04234797533740675 TYQCSQSSSI 10 Unmodified _TYQCSQSSSI_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2394409179688 2 552.237321 1102.46009 0.68866 0.0003803 -0.65101 -0.00035951 0.037649 2.0791E-05 552.2379193238617 43.249 0.61385 38.484 38.243 38.857 -4.7648 136 41 5 0 0 0 0.60623 1 26461 26461 10.824 2.0785 1 101900000 + 67230 17737 44669 45680 78590 78590 -0.08704282155667897 TYQDFDMGTL 10 Unmodified _TYQDFDMGTL_ 0 0 0 ENSG00000151694|ENST00000310823|ADAM17;nc|ENSG00000151694|P78536-2|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 ENSG00000151694|ENST00000310823|ADAM17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.7903442382812 2 595.755346 1189.49614 NaN NaN NaN NaN NaN NaN NaN 45.903 1 45.903 45.403 46.403 0 0 0 0 0.85122 1 25058 25058 10.074 1.4806 1 67231 6140 44670 45681 78591 78591 -0.09102824978822355 TYQDIFRDF 9 Unmodified _TYQDIFRDF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000472860.1_1_3:195000059-195000408:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7852172851562 2 602.785296 1203.55604 0.05853 3.5281E-05 -1.8163 -0.0010948 -1.7577 -0.0010595 602.7847654118316 82.713 0.77662 76.537 76.086 76.863 -6.1757 64 43 2 0 0 0 0.073961 1 54489 54489 49.554 28.683 1 19568000 67232 3030 44671 45682 78592 78592 -0.037597662533016774 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7705078125 2 548.269478 1094.5244 -0.1421 -7.791E-05 0.21507 0.00011792 0.07297 4.0007E-05 548.2695423599541 44.701 0.39438 44.701 44.512 44.906 0 76 20 5 0 0 0 0.030212 2 24263 24263;24371 69.105 16.837 1 816460000 67233 8957 44672 45683 78593;78594 78593 -0.019077590072356543 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 1095.53466796875 1 1095.53168 1094.5244 0.37854 0.0004147 0.01605 1.7583E-05 0.39459 0.00043229 1095.531619818013 52.104 0.44118 46.369 46.194 46.635 -5.7345 59 28 3 0 0 0 1.9558E-16 2 32788 32788;33045 222.22 133.99 1 144810000 67234 8957 44672 45683 78595;78596 78595 -0.019077590072356543 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2701416015625 2 548.269478 1094.5244 0.46443 0.00025463 0.017108 9.3795E-06 0.48154 0.00026401 548.2695630306887 52.102 0.6189 46.367 46.107 46.726 -5.7345 125 39 4 0 0 0 0.037253 1 32848 32848 65.235 21.377 1 899580000 67235 8957 44672 45683 78597 78597 -0.019077590072356543 TYQDIQNTI 9 Unmodified _TYQDIQNTI_ 0 0 0 ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A ENSG00000181222|ENST00000674977|POLR2A ENSG00000181222|ENST00000674977|POLR2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 548.269478 1094.5244 -0.10885 -5.9678E-05 0.012477 6.841E-06 -0.09637 -5.2837E-05 548.269059032707 44.7 0.1535 44.678 44.623 44.777 -0.022068 -0.011514 -0.00020508 NaN 69.105 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 5293400 67236 8957 44672 45683 -0.019077590072356543 TYQDLDGLPCI 11 Unmodified _TYQDLDGLPCI_ 0 0 0 ENST00000578955.1_1_18:19057140-19088617:+|nuORF;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L ENST00000578955.1_1_18:19057140-19088617:+|nuORF ENST00000578955.1_1_18:19057140-19088617:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1973876953125 3 413.197156 1236.56964 NaN NaN NaN NaN NaN NaN NaN 35.845 1 35.845 35.345 36.345 0 0 0 0 0.93893 1 18973 18973 1.3296 0.1363 1 67237 5334 44673 45684 78598 78598 -0.039182765363648286 TYQDRLTKL 9 Unmodified _TYQDRLTKL_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8802795410156 3 379.880267 1136.61897 -0.91268 -0.00034671 1.3823 0.00052512 0.46965 0.00017841 379.8807072805254 32.157 0.20027 32.157 32.023 32.223 0 21 9 3 0 0 0 0.38785 1 16794 16794 12.873 4.7171 1 3262500 67238 7243 44674 45685 78599 78599 0.056127995347424076 TYQEFNHYL 9 Unmodified _TYQEFNHYL_ 0 0 0 ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.7742919921875 2 607.77747 1213.54039 0.14336 8.7133E-05 -3.1591 -0.00192 -3.0157 -0.0018329 607.775694568598 50.106 0.18732 50.106 49.966 50.154 0 11 8 2 0 0 0 0.37578 1 27614 27614 19.257 9.1831 1 2260900 67239 2040 44675 45686 78600 78600 -0.05784052770309245 TYQEFNHYL 9 Unmodified _TYQEFNHYL_ 0 0 0 ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 607.77747 1213.54039 0.87681 0.00053291 -1.6917 -0.0010282 -0.81487 -0.00049526 607.7773758964692 50.569 0.16463 50.156 50.072 50.236 -0.41351 0.043137 -0.00026288 NaN 19.257 17 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1438600 67240 2040 44675 45686 -0.05784052770309245 TYQEFNHYL 9 Unmodified _TYQEFNHYL_ 0 0 0 ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI ENSG00000102384|ENST00000682095|CENPI MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 607.77747 1213.54039 0.015019 9.1282E-06 -0.94554 -0.00057468 -0.93052 -0.00056555 608.2780858686593 55.997 0.25285 50.076 49.921 50.174 -5.9211 -0.036416 0.00064411 NaN 19.257 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 15013000 67241 2040 44675 45686 -0.05784052770309245 TYQEKITHL 9 Unmodified _TYQEKITHL_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2046203613281 3 378.204751 1131.59242 -0.33662 -0.00012731 0.83566 0.00031605 0.49904 0.00018874 378.2049740308328 29.353 0.22922 29.353 29.222 29.451 0 33 10 4 0 0 0 0.12357 1 15173 15173 30.703 19.209 1 9613600 67242 2928 44676 45687 78601 78601 0.031891106434159155 TYQEKITHL 9 Unmodified _TYQEKITHL_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.80517578125 2 566.803488 1131.59242 NaN NaN NaN NaN NaN NaN NaN 29.356 1 29.356 28.856 29.856 0 0 0 0 0.034036 1 15201 15201 78.06 53.07 1 67243 2928 44676 45687 78602 78602 0.031891106434159155 TYQEKITHL 9 Unmodified _TYQEKITHL_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2051391601562 3 378.204751 1131.59242 1.1356 0.00042949 -0.56957 -0.00021541 0.56602 0.00021407 378.2043525535024 32.705 0.37636 28.848 28.652 29.028 -3.8562 49 19 3 0 0 0 0.27545 1 18774 18774 18.373 11.271 1 24619000 67244 2928 44676 45687 78603 78603 0.031891106434159155 TYQEKITHL 9 Unmodified _TYQEKITHL_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.2777709960938 2 566.803488 1131.59242 0.81206 0.00046028 0.027631 1.5661E-05 0.83969 0.00047594 566.8035258433749 32.77 0.24678 28.914 28.715 28.961 -3.8562 17 12 2 0 0 0 0.18118 1 18686 18686 19.257 9.1831 1 8503400 67245 2928 44676 45687 78604 78604 0.031891106434159155 TYQELLGLSF 10 Unmodified _TYQELLGLSF_ 0 0 0 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.8065185546875 2 585.805697 1169.59684 NaN NaN NaN NaN NaN NaN NaN 55.697 1 55.219 54.719 55.719 -0.47798 0 0 0 0.96981 1 30219 30219 3.9444 1.3669 1 67246 3691 44677 45688 78605 78605 0.01882575066338177 TYQELLRV 8 Unmodified _TYQELLRV_ 0 0 0 ENSG00000154945|ENST00000285243|ANKRD40 ENSG00000154945|ENST00000285243|ANKRD40 ENSG00000154945|ENST00000285243|ANKRD40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.6090087890625 2 511.287474 1020.5604 0.45401 0.00023213 0.58999 0.00030166 1.044 0.00053379 511.28779463021004 47.534 0.22278 47.181 47.105 47.328 -0.3526 15 10 2 0 0 0 8.7369 1 25538 25538 11.64 0 1 4489300 67247 6358 44678 45689 78606 78606 0.050937429602981865 TYQHVPVESF 10 Unmodified _TYQHVPVESF_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.7940673828125 2 603.793121 1205.57169 -0.51098 -0.00030853 0.8424 0.00050864 0.33142 0.00020011 603.793405257016 44.623 0.17218 44.623 44.492 44.664 0 12 8 2 0 0 0 0.091475 1 24274 24274 55.235 35.978 1 7806300 67248 6146 44679 45690 78607 78607 -0.022874797362419486 TYQLGFHSI 9 Unmodified _TYQLGFHSI_ 0 0 0 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 ENSG00000142507|ENST00000270586|PSMB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2691040039062 2 533.271824 1064.5291 -0.47989 -0.00025591 -0.80866 -0.00043123 -1.2885 -0.00068714 533.2712835498718 56.021 0.22001 55.537 55.417 55.637 -0.48333 26 10 3 0 0 0 0.011968 1 30393 30393 74.929 40.827 1 6758900 67249 5417 44680 45691 78608 78608 -0.0005883007379452465 TYQNFRLN 8 Unmodified _TYQNFRLN_ 0 0 0 nc|ENSG00000150893|Q5SZK8-2|FREM2;ENSG00000150893|ENST00000280481|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2681274414062 2 528.267073 1054.51959 2.6391 0.0013942 0.36763 0.0001942 3.0068 0.0015884 528.2672212405024 97.014 0.32697 97.007 96.799 97.126 -0.007019 18 12 2 0 0 0 0.80975 1 53896 53896 0.79363 0 1 4147000 67250 6077 44681 45692 78609 78609 -0.005485983593189303 TYQNLDIYL 9 Unmodified _TYQNLDIYL_ 0 0 0 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 ENSG00000023839|ENST00000647814|ABCC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.26220703125 2 571.790047 1141.56554 -0.056691 -3.2415E-05 -1.3438 -0.00076837 -1.4005 -0.00080079 571.7893264595224 22.496 0.28639 22.496 22.304 22.59 0 17 13 2 0 0 0 0.21564 1 11445 11445 3.9444 1.2092 1 581520 67251 547 44682 45693 78610 78610 0.00042002032250820776 TYQPDVHFF 9 Unmodified _TYQPDVHFF_ 0 0 0 REV__ENSG00000257315|ENST00000550078|ZBED6 REV__ENSG00000257315|ENST00000550078|ZBED6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2810668945312 2 577.269281 1152.52401 NaN NaN NaN NaN NaN NaN NaN 41.772 1 41.772 41.272 42.272 0 0 0 0 0.43505 1 22564 22564 18.135 8.0611 1 + 67252 24563 44683 45694 78611 78611 -0.04615133936431448 TYQQFRRCL 9 Unmodified _TYQQFRRCL_ 0 0 0 ENSG00000163029|ENST00000448223|SMC6;nc|ENSG00000163029|Q96SB8-2|SMC6 ENSG00000163029|ENST00000448223|SMC6 ENSG00000163029|ENST00000448223|SMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.8098754882812 2 607.808582 1213.60261 NaN NaN NaN NaN NaN NaN NaN 67.61 1 67.61 67.11 68.11 0 0 0 0 0.84564 1 37701 37701 2.0598 0.40713 1 67253 6943 44684 45695 78612 78612 0.004353950970426013 TYQQLFYLL 9 Unmodified _TYQQLFYLL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8184814453125 2 594.818607 1187.62266 1.4886 0.00088543 -2.3179 -0.0013787 -0.82929 -0.00049327 594.8169052995872 100.32 0.10732 100.28 100.21 100.32 -0.036301 8 3 3 0 0 0 0.013041 1 55727 55727 71.922 43.435 1 21444000 67254 5714 44685 45696 78613 78613 0.036354693086195766 TYQQLFYLL 9 Unmodified _TYQQLFYLL_ 0 0 0 ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 ENSG00000145703|ENST00000274364|IQGAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8192138671875 2 594.818607 1187.62266 0.80635 0.00047963 -0.6967 -0.00041441 0.10965 6.5224E-05 594.8180149981832 101.19 0.21397 95.017 94.85 95.064 -6.1757 22 12 3 0 0 0 0.009483 1 67864 67864 81.89 54.261 1 90875000 67255 5714 44685 45696 78614 78614 0.036354693086195766 TYQQVQQTL 9 Unmodified _TYQQVQQTL_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.785400390625 2 554.785296 1107.55604 0.64243 0.00035641 0.66214 0.00036735 1.3046 0.00072376 554.7851933593245 37.029 0.49274 37.029 36.857 37.35 0 76 24 5 0 0 0 0.013118 2 19664 19664;19765 78.728 55.992 1 70551000 67256 3939 44686 45697 78615;78616 78615 0.006562337467130419 TYQQVQQTL 9 Unmodified _TYQQVQQTL_ 0 0 0 nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 nc|ENSG00000126254|Q9BTD8-4|RBM42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7855224609375 2 554.785296 1107.55604 0.74601 0.00041388 -0.14967 -8.3033E-05 0.59635 0.00033084 554.7852400558914 43.263 0.63281 38.498 38.21 38.843 -4.7648 114 42 4 0 0 0 0.011739 2 26094 26094;26239 92.653 42.601 1 183240000 67257 3939 44686 45697 78617;78618 78617 0.006562337467130419 TYQRWQFTL 9 Unmodified _TYQRWQFTL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8153686523438 2 621.81693 1241.61931 0.69678 0.00043327 -0.86581 -0.00053837 -0.16902 -0.0001051 621.8161862245794 79.202 0.63206 73.026 72.5 73.132 -6.1757 70 35 2 0 0 0 0.00030554 3 51873 51577;51740;51873 148.27 85.695 1 13665000 67258 8403 44687 45698 78619;78620;78621 78621 0.008162192546024016 TYQRWQFTL 9 Unmodified _TYQRWQFTL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3173217773438 2 621.81693 1241.61931 0.9662 0.0006008 -1.268 -0.00078845 -0.30179 -0.00018766 622.3175348684537 79.846 1.3554 73.67 72.665 74.02 -6.1757 142 79 3 0 0 0 0.00049731 3 52385 52254;52385;52529 143.91 74.804 1 26702000 67259 8403 44687 45698 78622;78623;78624 78623 0.008162192546024016 TYQRWQFTL 9 Unmodified _TYQRWQFTL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20221201_MKP_PDAC_01 4 621.8165283203125 2 621.81693 1241.61931 NaN NaN NaN NaN NaN NaN NaN 79.525 1 73.349 72.849 73.849 -6.1757 0 0 0 0.0059977 1 52117 52117 103.82 48.321 1 67260 8403 44687 45698 78625 78625 0.008162192546024016 TYQSAPPWD 9 Unmodified _TYQSAPPWD_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.73828125 2 532.737814 1063.46108 0.37589 0.00020025 0.28916 0.00015405 0.66505 0.0003543 532.7379276168299 48.371 0.35131 47.999 47.849 48.2 -0.37172 36 17 3 0 0 0 0.5029 1 26002 26002 7.2892 1.5288 1 2469900 + 67261 23192 44688 45699 78626 78626 -0.0681169972447151 TYQSIAIVF 9 Unmodified _TYQSIAIVF_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000493008.1_1_10:32096588-32098081:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2843627929688 2 521.2844 1040.55425 0.41139 0.00021445 0.25668 0.0001338 0.66807 0.00034825 521.2847574021728 85.012 0.36037 84.511 84.3 84.661 -0.5015 41 17 3 0 0 0 0.08691 1 46460 46460 36.127 10.728 1 2579400 67262 7325 44689 45700 78627 78627 0.035592247287468126 TYQSIAIVF 9 Unmodified _TYQSIAIVF_ 0 0 0 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12;ENST00000493008.1_1_10:32096588-32098081:-|nuORF nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 nc|ENSG00000165322|Q8IWW6-3|ARHGAP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2852172851562 2 521.2844 1040.55425 1.1715 0.00061068 0.29074 0.00015156 1.4622 0.00076224 521.2842431223283 92.044 0.90946 85.869 85.49 86.399 -6.1757 94 53 3 0 0 0 0.032796 3 60913 60790;60913;61057 53.833 16.44 1 26870000 67263 7325 44689 45700 78628;78629;78630 78629 0.035592247287468126 TYQSITERI 9 Unmodified _TYQSITERI_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.792724609375 2 555.793121 1109.57169 0.20926 0.0001163 1.1742 0.0006526 1.3834 0.0007689 555.7928964221886 40.407 0.28866 40.407 40.257 40.545 0 37 14 3 0 0 0 0.015688 1 21692 21692 67.838 23.98 1 20508000 67264 4336 44690 45701 78631 78631 0.021285202637500333 TYQSITERI 9 Unmodified _TYQSITERI_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.793701171875 2 555.793121 1109.57169 0.82444 0.00045822 0.95602 0.00053135 1.7805 0.00098956 555.7933054044366 45.665 0.40386 40.71 40.504 40.908 -4.9549 61 26 3 0 0 0 0.0081 2 27996 27996;28147 93.938 38.435 1 53915000 67265 4336 44690 45701 78632;78633 78632 0.021285202637500333 TYQSITERI 9 Unmodified _TYQSITERI_ 0 0 0 ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF ENSG00000131558|ENST00000253861|EXOC4 ENSG00000131558|ENST00000253861|EXOC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 555.793121 1109.57169 0.68489 0.00038066 0.63588 0.00035342 1.3208 0.00073408 555.7934769440935 40.845 0.18311 40.542 40.418 40.601 -0.30304 -0.011412 -0.00031486 NaN 93.938 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1539000 67266 4336 44690 45701 0.021285202637500333 TYQSKLAKDV 10 Unmodified _TYQSKLAKDV_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.3159790039062 2 576.816596 1151.61864 0.60336 0.00034803 -1.9258 -0.0011109 -1.3225 -0.00076283 577.3163702200494 32.82 0.38522 28.964 28.715 29.1 -3.8562 53 20 3 0 0 0 0.23693 1 18698 18698 6.2058 6.2058 1 30472000 67267 641 44691 45702 78634 78634 0.04889379814903805 TYQTEYRWEVY 11 Unmodified _TYQTEYRWEVY_ 0 0 0 ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18477017-18479494:-|nuORF ENSG00000008710|ENST00000262304|PKD1 ENSG00000008710|ENST00000262304|PKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 769.3477783203125 2 769.351531 1536.68851 -0.090874 -6.9914E-05 -3.8034 -0.0029261 -3.8943 -0.0029961 769.3492638837457 65.013 0.25836 65.013 64.936 65.194 0 15 11 2 0 0 0 0.7326 1 36260 36260 1.1933 0.84271 1 755180 67268 395 44692 45703 78635 78635 -0.058367863071680404 TYQTIIELF 9 Unmodified _TYQTIIELF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3046264648438 2 564.30279 1126.59103 0.51396 0.00029003 1.2325 0.00069551 1.7465 0.00098554 564.3033516527627 98.991 0.30868 98.798 98.691 99 -0.19321 26 10 4 0 0 0 0.009483 1 54046 54046 81.89 13.809 1 9980800 67269 6681 44693 45704 78636 78636 0.03279476554644134 TYQTIIELF 9 Unmodified _TYQTIIELF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3041381835938 2 564.30279 1126.59103 4.486 0.0025315 -0.91201 -0.00051465 3.574 0.0020168 564.3019701588614 98.822 0.2276 98.794 98.693 98.92 -0.028282 18 7 3 0 0 0 0.009483 1 54887 54887 81.89 13.809 1 6879300 67270 6681 44693 45704 78637 78637 0.03279476554644134 TYQTIIELF 9 Unmodified _TYQTIIELF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3035888671875 2 564.30279 1126.59103 1.4994 0.00084611 -0.36769 -0.00020749 1.1317 0.00063863 564.3025318905133 100.77 0.1366 94.597 94.515 94.651 -6.1757 31 9 4 0 0 0 0.039985 1 67458 67458 49.933 20.851 1 236060000 67271 6681 44693 45704 78638 78638 0.03279476554644134 TYQTIIELF 9 Unmodified _TYQTIIELF_ 0 0 0 ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47492766-47503942:+|nuORF ENSG00000160007|ENST00000672722|ARHGAP35 ENSG00000160007|ENST00000672722|ARHGAP35 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 564.30279 1126.59103 0.29999 0.00016929 1.7804 0.0010047 2.0804 0.001174 564.3037925420248 98.811 0.17254 98.811 98.729 98.901 0 0.0099364 0.00070133 NaN 81.89 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 460350 67272 6681 44693 45704 0.03279476554644134 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2848510742188 2 521.2844 1040.55425 0.43126 0.00022481 0.59273 0.00030898 1.024 0.00053379 521.2846196832394 83.206 0.65185 82.709 82.448 83.099 -0.49751 88 26 5 0 0 0 0.028475 3 45495 45495;45601;45703 56.177 23.872 1 52551000 67273 830 44694 45705 78639;78640;78641 78639 0.035592247287468126 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2847900390625 2 521.2844 1040.55425 1.0325 0.0005382 0.64397 0.00033569 1.6764 0.0008739 521.2845650045992 82.557 0.44566 82.619 82.449 82.894 0.062004 41 16 3 0 0 0 0.014417 2 45644 45644;45749 69.105 23.947 1 23129000 67274 830 44694 45705 78642;78643 78642 0.035592247287468126 TYQVLAVTF 9 Unmodified _TYQVLAVTF_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2850952148438 2 521.2844 1040.55425 1.3709 0.00071464 -0.084151 -4.3866E-05 1.2868 0.00067077 521.284396820152 90.672 0.81149 84.496 84.127 84.939 -6.1757 131 48 3 0 0 0 0.023481 4 59885 59756;59885;60019;60150 60.074 23.872 1 188710000 67275 830 44694 45705 78644;78645;78646;78647 78645 0.035592247287468126 TYRCSKEGCKK 11 Unmodified _TYRCSKEGCKK_ 0 0 0 ENSG00000178381|ENST00000316495|ZFAND2A ENSG00000178381|ENST00000316495|ZFAND2A ENSG00000178381|ENST00000316495|ZFAND2A MSMS AL20221201_MKP_PDAC_01 4 434.8821716308594 3 434.881285 1301.62203 NaN NaN NaN NaN NaN NaN NaN 16.189 1 13.632 13.132 14.132 -2.557 0 0 0 0.94184 1 8368 8368 0.40827 0 1 67276 8748 44695 45706 78648 78648 -0.016720166743880327 TYREDFQRIT 10 Unmodified _TYREDFQRIT_ 0 0 0 REV__ENSG00000143994|ENST00000316470|ABHD1 REV__ENSG00000143994|ENST00000316470|ABHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.8349609375 2 664.833308 1327.65206 NaN NaN NaN NaN NaN NaN NaN 65.869 1 65.869 65.369 66.369 0 0 0 0 0.8671 1 36737 36737 9.3831 0 1 + 67277 20686 44696 45707 78649 78649 0.0013438158680401102 TYRFQEKY 8 Unmodified _TYRFQEKY_ 0 0 0 SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant;nc|ENSG00000152582|Q9C093-3|SPEF2;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2 SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant SPEF2|p.N528Tfs*16|1|0.16|ENSG00000152582|chr5:35691084-35691085|-/CCACCCT|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2801513671875 2 567.782556 1133.55056 0.57178 0.00032465 -1.2801 -0.0007268 -0.70829 -0.00040215 567.78124929178 64.79 0.62167 64.304 64.169 64.79 -0.48512 38 28 2 0 0 0 8.7369 1 35502 35502 8.5933 2.8329 1 1209700 67278 30172 44697 45708 78650 78650 -0.01087445045095592 TYRFSESSER 10 Unmodified _TYRFSESSER_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.1986389160156 3 421.198436 1260.57348 -0.20128 -8.4777E-05 0.21289 8.967E-05 0.011616 4.8926E-06 421.1987366804511 31.062 0.32189 31.092 30.925 31.247 0.030104 38 13 4 0 0 0 0.5933 1 16265 16265 7.0371 1.9896 1 9830400 67279 4693 44698 45709 78651 78651 -0.04638470718282406 TYRFSESSER 10 Unmodified _TYRFSESSER_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 421.198436 1260.57348 0.015682 6.6051E-06 0.59638 0.00025119 0.61206 0.0002578 421.1987242926855 31.244 0.14404 31.244 31.174 31.318 0 0.086667 0.00023972 NaN 7.0371 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 626840 67280 4693 44698 45709 -0.04638470718282406 TYRFSESSER 10 Unmodified _TYRFSESSER_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 421.198436 1260.57348 0.27245 0.00011475 0.50236 0.00021159 0.77481 0.00032635 421.1988607994997 31.238 0.32507 31.136 30.984 31.309 -0.10269 -0.021669 0.00012092 NaN 7.0371 39 12 4 NaN NaN NaN NaN 0 NaN NaN 0 16586000 67281 4693 44698 45709 -0.04638470718282406 TYRFSESSER 10 Unmodified _TYRFSESSER_ 0 0 0 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 ENSG00000135338|ENST00000369846|LCA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 421.198436 1260.57348 -0.20128 -8.4777E-05 0.21289 8.967E-05 0.011616 4.8926E-06 421.1987366804511 31.062 0.32189 31.092 30.925 31.247 0.030104 -0.064999 -0.00024485 NaN 7.0371 38 13 4 NaN NaN NaN NaN 0 NaN NaN 0 9830400 67282 4693 44698 45709 -0.04638470718282406 TYRFTTKSDVW 11 Unmodified _TYRFTTKSDVW_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.5697326660156 3 468.569981 1402.68811 0.37782 0.00017703 -1.2488 -0.00058515 -0.87098 -0.00040812 468.90374762064187 43.359 0.11061 43.344 43.266 43.377 -0.015667 6 4 2 0 0 0 0.28349 1 23248 23248 20.411 16.294 1 5018200 67283 7133 44699 45710 78652 78652 0.0028783876366560435 TYRFTTKSDVW 11 Unmodified _TYRFTTKSDVW_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF nc|ENSG00000164078|Q04912-2|MST1R nc|ENSG00000164078|Q04912-2|MST1R MSMS AL20221201_MKP_PDAC_01 4 468.5700378417969 3 468.569981 1402.68811 NaN NaN NaN NaN NaN NaN NaN 48.378 1 43.144 42.644 43.644 -5.2339 0 0 0 0.11623 1 30125 30125 34.674 13.432 1 67284 7133 44699 45710 78653 78653 0.0028783876366560435 TYRGAHIP 8 Unmodified _TYRGAHIP_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7466735839844 2 457.745776 913.477 1.5861 0.00072604 1.0893 0.00049863 2.6754 0.0012247 457.7461747037 50.197 0.56768 50.148 49.865 50.433 -0.048828 41 27 2 0 0 0 0.80232 1 27155 27155 5.2307 0 1 988880 + 67285 20944 44700 45711 78654 78654 0.016800513030943875 TYRIDPNVL 9 Unmodified _TYRIDPNVL_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2632446289062 2 545.798206 1089.58186 0.5033 0.0002747 -0.84151 -0.00045929 -0.33821 -0.0001846 545.7980636236983 52.156 0.16262 52.097 52.027 52.189 -0.058918 13 7 2 0 0 0 0.20358 1 28217 28217 10.074 0.6908 1 1334800 67286 16013 44701 45712 78655 78655 0.04065127988997119 TYRITSGNPQ 10 Unmodified _TYRITSGNPQ_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3;nc|ENSG00000165323|Q8TDW7-2|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.22509765625 2 568.78837 1135.56219 0.59642 0.00033923 0.22595 0.00012852 0.82237 0.00046775 569.2875218325595 53.349 0.46697 53.349 53.08 53.547 0 31 20 2 0 0 0 0.50362 1 29542 29542 16.149 0 1 4096800 67287 7326 44702 45713 78656 78656 -0.00017248021754312504 TYRKMTLPL 9 Unmodified _TYRKMTLPL_ 0 0 0 ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8821105957031 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 79.759 1 73.583 73.083 74.083 -6.1757 0 0 0 0.28328 1 52289 52289 26.021 9.4548 1 67288 15268 44703 45714 78657 78657 0.07075235530692225 TYRKMTLPL 9 Unmodified _TYRKMTLPL_ 0 0 0 ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8821411132812 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 79.949 1 73.773 73.273 74.273 -6.1757 0 0 0 0.348 1 52428 52428 22.658 3.2961 1 67289 15268 44703 45714 78658 78658 0.07075235530692225 TYRKMTLPL 9 Unmodified _TYRKMTLPL_ 0 0 0 ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8821411132812 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 80.133 1 73.957 73.457 74.457 -6.1757 0 0 0 0.38798 1 52558 52558 20.581 0.95498 1 67290 15268 44703 45714 78659 78659 0.07075235530692225 TYRKMTLPL 9 Unmodified _TYRKMTLPL_ 0 0 0 ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF ENST00000557871.1_1_15:52214044-52217987:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 374.8820190429688 3 374.882843 1121.6267 NaN NaN NaN NaN NaN NaN NaN 80.326 1 74.15 73.65 74.65 -6.1757 0 0 0 0.54558 1 52699 52699 14.405 6.7964 1 67291 15268 44703 45714 78660 78660 0.07075235530692225 TYRLFAVVY 9 Unmodified _TYRLFAVVY_ 0 0 0 ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF ENSG00000103194|ENST00000219473|USP10 ENSG00000103194|ENST00000219473|USP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3125610351562 2 566.313492 1130.61243 0.3995 0.00022624 0.19905 0.00011273 0.59855 0.00033897 566.313144503933 73.085 0.30595 73.127 72.944 73.25 0.041725 33 14 3 0 0 0 0.14859 1 40230 40230 29.841 22.551 1 8734500 67292 2110 44704 45715 78661 78661 0.052349063740621204 TYRLMPHF 8 Unmodified _TYRLMPHF_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.769775390625 2 532.770937 1063.52732 0.31566 0.00016818 -1.4857 -0.00079154 -1.17 -0.00062337 532.7701465030494 96.558 0.28618 96.253 96.111 96.397 -0.30472 29 16 2 0 0 0 0.80624 1 52786 52786 2.8892 0 1 478220 + 67293 19763 44705 45716 78662 78662 -0.0019016236340121395 TYRLWTLVK 9 Unmodified _TYRLWTLVK_ 0 0 0 REV__nc|ENSG00000074696|Q9P035-2|HACD3 REV__nc|ENSG00000074696|Q9P035-2|HACD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.9008178710938 3 393.901003 1178.68118 0.20761 8.178E-05 0.28542 0.00011243 0.49304 0.00019421 393.9011148172756 69.563 0.3697 69.594 69.476 69.846 0.030914 29 18 2 0 0 0 0.58145 1 38315 38315 2.4985 0 1 2998200 + 67294 17557 44706 45717 78663 78663 0.09898570673726681 TYRMIEQDDF 10 Unmodified _TYRMIEQDDF_ 0 0 0 nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE nc|ENSG00000159921|Q9Y223-4|GNE nc|ENSG00000159921|Q9Y223-4|GNE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.2918701171875 2 659.292627 1316.5707 0.18013 0.00011876 -0.49041 -0.00032332 -0.31028 -0.00020457 659.2918480388336 43.154 0.10209 43.154 43.102 43.204 0 6 4 2 0 0 0 0.60623 1 23431 23431 10.824 5.0921 1 20155000 67295 6680 44707 45718 78664 78664 -0.07492062167466429 TYRMIEQDDF 10 Unmodified _TYRMIEQDDF_ 0 0 0 nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE nc|ENSG00000159921|Q9Y223-4|GNE nc|ENSG00000159921|Q9Y223-4|GNE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.8198852539062 2 659.292627 1316.5707 -0.16917 -0.00011153 -1.0626 -0.00070054 -1.2317 -0.00081208 659.7938407156984 40.271 0.38234 40.271 40.03 40.412 0 26 18 2 0 0 0 0.23634 1 21615 21615 6.7232 2.7788 1 1503900 67296 6680 44707 45718 78665 78665 -0.07492062167466429 TYRMQPNRRR 10 Unmodified _TYRMQPNRRR_ 0 0 0 REV__ENSG00000138411|ENST00000644978|HECW2 REV__ENSG00000138411|ENST00000644978|HECW2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.25 3 459.9142 1376.72077 0.36445 0.00016762 3.7451 0.0017224 4.1095 0.00189 460.24869210436634 24.286 0.24322 24.307 24.216 24.459 0.021185 13 9 2 0 0 0 0.69385 1 12544 12544 3.5871 0.26742 1 3390300 + 67297 20332 44708 45719 78666 78666 0.047477674055016905 TYRNQQNKT 9 Unmodified _TYRNQQNKT_ 0 0 0 REV__ENST00000496366.1_1_1:46153874-46159045:+|nuORF REV__ENST00000496366.1_1_1:46153874-46159045:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.8625793457031 3 384.863388 1151.56833 NaN NaN NaN NaN NaN NaN NaN 31.325 1 27.629 27.129 28.129 -3.6958 0 0 0 0.70001 1 17731 17731 6.1918 0.78914 1 + 67298 27961 44709 45720 78667 78667 -0.001387297902510909 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(51)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2776489257812 2 602.27678 1202.53901 -0.21418 -0.000129 -0.47841 -0.00028814 -0.69259 -0.00041713 602.2766746312606 31.582 0.3415 31.582 31.398 31.739 0 66 16 5 0 0 0 0.037253 2 16399 16399;16496 51.415 30.962 1 88722000 67299 336 44710 45721 78668;78669 78668 37 -0.054160101307388686 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(48)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2764892578125 2 602.27678 1202.53901 -0.71944 -0.0004333 0.11702 7.0478E-05 -0.60243 -0.00036283 602.2769928101901 31.92 0.38691 31.92 31.739 32.126 0 73 18 6 0 0 0 0.044296 1 16665 16665 47.594 31.747 1 120640000 67300 336 44710 45721 78670 78670 37 -0.054160101307388686 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(96)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.27734375 2 602.27678 1202.53901 0.16631 0.00010016 0.087045 5.2425E-05 0.25335 0.00015259 602.2769174473852 31.552 0.24152 31.45 31.333 31.575 -0.10269 34 9 5 0 0 0 0.0082548 1 16398 16398 96.367 66.526 1 20999000 67301 336 44710 45721 78671 78671 37 -0.054160101307388686 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(120)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7785034179688 2 602.27678 1202.53901 0.05745 3.4601E-05 0.24303 0.00014637 0.30048 0.00018097 602.2770158277448 31.86 0.29071 31.731 31.575 31.866 -0.12915 36 11 4 0 0 0 0.0047067 2 16553 16553;16555 118.07 76.229 1 17182000 67302 336 44710 45721 78672;78673 78672 37 -0.054160101307388686 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(86)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.2759399414062 2 602.27678 1202.53901 0.10489 6.3171E-05 -0.39667 -0.00023891 -0.29178 -0.00017573 602.2766288614922 35.508 0.43331 31.315 31.094 31.527 -4.1928 85 26 4 0 0 0 0.0089732 2 20523 20523;20656 86.332 62.311 1 96566000 67303 336 44710 45721 78674;78675 78674 37 -0.054160101307388686 TYRNVMEQF 9 Oxidation (M) _TYRNVM(Oxidation (M))EQF_ TYRNVM(1)EQF TYRNVM(59)EQF 0 0 1 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.2772216796875 2 602.27678 1202.53901 0.73261 0.00044124 -0.6414 -0.0003863 0.091212 5.4935E-05 602.2769054449793 35.937 0.46483 31.745 31.512 31.977 -4.1928 94 29 4 0 0 0 0.024189 2 20998 20863;20998 59.368 43.219 1 92933000 67304 336 44710 45721 78676;78677 78677 37 -0.054160101307388686 TYRNVMEQF 9 Unmodified _TYRNVMEQF_ 0 0 0 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2825927734375 2 594.279323 1186.54409 0.39982 0.0002376 0.62472 0.00037126 1.0245 0.00060886 594.2797088218288 47.459 0.28667 47.459 47.314 47.601 0 38 12 4 0 0 0 0.021948 2 25945 25945;26058 61.602 38.866 1 10345000 67305 336 44710 45722 78678;78679 78678 -0.041717062681300376 TYRNVMEQF 9 Unmodified _TYRNVMEQF_ 0 0 0 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2796020507812 2 594.279323 1186.54409 0.68101 0.00040471 0.21911 0.00013021 0.90012 0.00053492 594.2792225860591 47.731 0.35147 47.379 47.183 47.535 -0.3526 50 16 4 0 0 0 0.011291 2 25537 25537;25644 76.825 54.089 1 29900000 67306 336 44710 45722 78680;78681 78680 -0.041717062681300376 TYRNVMEQF 9 Unmodified _TYRNVMEQF_ 0 0 0 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2799682617188 2 594.279323 1186.54409 0.47639 0.00028311 -0.3181 -0.00018904 0.15828 9.4065E-05 594.2792249989593 53.078 0.50757 47.273 46.99 47.498 -5.8042 109 28 5 0 0 0 0.00044362 3 33380 33380;33495;33624 145.13 96.784 1 546090000 67307 336 44710 45722 78682;78683;78684 78682 -0.041717062681300376 TYRPLNDVHI 10 Unmodified _TYRPLNDVHI_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8877258300781 3 409.887533 1226.64077 1.1871 0.00048657 0.10756 4.4088E-05 1.2947 0.00053066 409.88769558390464 48.486 0.31441 43.09 42.907 43.222 -5.3961 30 18 2 0 0 0 0.04428 1 30162 30162 47.053 31.314 1 19237000 67308 10672 44711 45723 78685 78685 0.036516042833454776 TYRPLNDVHI 10 Unmodified _TYRPLNDVHI_ 0 0 0 ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3 ENST00000463866.1_1_2:201736120-201746236:-|nuORF ENST00000463866.1_1_2:201736120-201746236:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 409.887533 1226.64077 -0.1809 -7.4148E-05 0.31874 0.00013065 0.13784 5.6498E-05 409.88795094484817 43.427 0.24211 43.427 43.341 43.583 0 0.16856 0.00013655 NaN 47.053 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 7732200 67309 10672 44711 45723 0.036516042833454776 TYRSLEGF 8 Unmodified _TYRSLEGF_ 0 0 0 ENST00000285679.10_1_21:17163853-17163904:+|nuORF ENST00000285679.10_1_21:17163853-17163904:+|nuORF ENST00000285679.10_1_21:17163853-17163904:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7435607910156 2 486.742899 971.471246 0.37227 0.0001812 1.3367 0.00065062 1.709 0.00083182 486.7436825643593 36.034 0.31202 36.034 35.937 36.249 0 22 15 2 0 0 0 0.31379 1 19088 19088 53.833 9.9745 1 4045900 67310 11441 44712 45724 78686 78686 -0.015630919992190684 TYRSLEGF 8 Unmodified _TYRSLEGF_ 0 0 0 ENST00000285679.10_1_21:17163853-17163904:+|nuORF ENST00000285679.10_1_21:17163853-17163904:+|nuORF ENST00000285679.10_1_21:17163853-17163904:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 486.7441711425781 2 486.742899 971.471246 NaN NaN NaN NaN NaN NaN NaN 40.595 1 36.065 35.565 36.565 -4.5294 0 0 0 0.6528 1 24264 24264 30.637 3.7529 1 67311 11441 44712 45724 78687 78687 -0.015630919992190684 TYRTRLDMF 9 Unmodified _TYRTRLDMF_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__ENSG00000151914|ENST00000680361|DST;REV__nc|ENSG00000151914|Q03001-3|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.5384216308594 3 401.537736 1201.59138 0.84123 0.00033779 0.61913 0.0002486 1.4604 0.00058639 401.5380287463727 91.227 0.27359 85.051 84.854 85.127 -6.1757 20 15 2 0 0 0 0.46501 1 60239 60239 6.1918 2.0752 1 6951600 + 67312 29707;21097;19587;29706 44713 45725 78688 78688 -0.001354269971670874 TYSAPLYVDIT 11 Unmodified _TYSAPLYVDIT_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.816650390625 2 621.816261 1241.61797 0.67706 0.00042101 -1.0683 -0.00066427 -0.39122 -0.00024327 621.8155781948327 68.159 0.59971 68.184 67.963 68.562 0.025146 82 29 4 0 0 0 0.37677 1 37503 37503 22.736 2.2827 1 25690000 67313 681 44714 45726 78689 78689 0.006825403751918202 TYSDDHVKF 9 Unmodified _TYSDDHVKF_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.1731872558594 3 371.173339 1110.49819 -0.55662 -0.0002066 0.31494 0.0001169 -0.24167 -8.9703E-05 371.17343189127956 28.8 0.24127 28.8 28.662 28.903 0 39 11 5 0 0 0 0.29507 1 14889 14889 17.443 10.341 1 23784000 67314 9273 44715 45727 78690 78690 -0.05264028178703484 TYSDDHVKF 9 Unmodified _TYSDDHVKF_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.17333984375 3 371.173339 1110.49819 1.4616 0.00054251 -0.87551 -0.00032497 0.58609 0.00021754 371.1729850496888 32.036 0.40279 28.34 28.175 28.578 -3.6958 58 22 3 0 0 0 0.2289 2 18178 18178;18321 20.581 13.104 1 38995000 67315 9273 44715 45727 78691;78692 78691 -0.05264028178703484 TYSDGSPDPF 10 Unmodified _TYSDGSPDPF_ 0 0 0 REV__ENSG00000154262|ENST00000284425|ABCA6 REV__ENSG00000154262|ENST00000284425|ABCA6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7640991210938 2 543.224736 1084.43492 0.18305 9.9438E-05 -4.0618 -0.0022065 -3.8787 -0.002107 543.2218689520939 62.763 0.18999 62.763 62.633 62.823 0 11 7 2 0 0 0 0.23566 1 34987 34987 7.2892 1.0834 1 495450 + 67316 21219 44716 45728 78693 78693 -0.10392013686623613 TYSDQYDQL 9 Unmodified _TYSDQYDQL_ 0 0 0 REV__ENSG00000135423|ENST00000311966|GLS2 REV__ENSG00000135423|ENST00000311966|GLS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8311157226562 3 378.164621 1131.47203 0.42219 0.00015966 -0.82794 -0.0003131 -0.40575 -0.00015344 378.16548394261974 57.22 0.53394 57.22 56.998 57.532 0 93 23 6 0 0 0 0.53557 1 31913 31913 5.2969 0 1 14438000 + 67317 20064 44717 45729 78694 78694 -0.08844342140855588 TYSEKTTLF 9 Unmodified _TYSEKTTLF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2763061523438 2 545.276772 1088.53899 -0.036463 -1.9882E-05 -0.40982 -0.00022346 -0.44628 -0.00024335 545.2765482982425 44.345 0.42129 44.345 44.07 44.492 0 43 21 3 0 0 0 0.036857 1 24089 24089 51.63 34.517 1 36314000 67318 8954 44718 45730 78695 78695 -0.0017368685910241766 TYSEKTTLF 9 Unmodified _TYSEKTTLF_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16;MUC16|p.E8107*|1|0.41|ENSG00000181143|chr19:8952451-8952452|-/A|frameshift_variant ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.27587890625 2 545.276772 1088.53899 0.79591 0.00043399 -0.17649 -9.6238E-05 0.61942 0.00033776 545.2765906822743 49.335 0.33725 43.939 43.731 44.068 -5.3961 29 21 2 0 0 0 0.0094097 1 30739 30739 82.529 34.781 1 41221000 67319 8954 44718 45730 78696 78696 -0.0017368685910241766 TYSESVPVI 9 Unmodified _TYSESVPVI_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7591552734375 2 497.758215 993.501877 0.43772 0.00021788 -0.013027 -6.4843E-06 0.42469 0.00021139 497.75820277228513 58.177 0.52145 58.177 57.794 58.316 0 44 20 3 0 0 0 0.078417 1 32239 32239 38.151 20.016 1 2837000 67320 7819 44719 45731 78697 78697 0.004866415951596537 TYSESVPVI 9 Unmodified _TYSESVPVI_ 0 0 0 nc|ENSG00000168944|Q8N960-2|CEP120;ENSG00000168944|ENST00000306467|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF nc|ENSG00000168944|Q8N960-2|CEP120 nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.5120849609375 1 994.509154 993.501877 0.1249 0.00012421 -0.37841 -0.00037633 -0.25351 -0.00025212 994.5088687088094 58.144 0.51806 58.144 57.772 58.29 0 31 20 3 0 0 0 0.28047 1 32246 32246 18.135 1.1927 1 1734900 67321 7819 44719 45731 78698 78698 0.004866415951596537 TYSFLYKPF 9 Unmodified _TYSFLYKPF_ 0 0 0 ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 389.2053527832031 3 389.202459 1164.58555 NaN NaN NaN NaN NaN NaN NaN 36.688 1 32.404 31.904 32.904 -4.2835 0 0 0 0.46757 1 21447 21447 11.495 0 1 67322 11013 44720 45732 78699 78699 0.009837977628421868 TYSGAGYYL 9 Unmodified _TYSGAGYYL_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 nc|ENSG00000118762|Q13563-5|PKD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7304382324219 2 497.729458 993.444362 NaN NaN NaN NaN NaN NaN NaN 77.468 1 76.986 76.486 77.486 -0.4826 0 0 0 0.7243 1 42410 42410 8.5933 2.8329 1 67323 3392 44721 45733 78700 78700 -0.052622006104115826 TYSGRYGLTL 10 Unmodified _TYSGRYGLTL_ 0 0 0 REV__ENSG00000183783|ENST00000360029|KCTD8 REV__ENSG00000183783|ENST00000360029|KCTD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7959594726562 2 565.795663 1129.57677 0.38112 0.00021564 0.17398 9.8435E-05 0.5551 0.00031407 565.7957374410241 66.097 0.49137 66.097 65.88 66.372 0 69 23 4 0 0 0 0.69064 1 36993 36993 3.9444 0 1 15362000 + 67324 23377 44722 45734 78701 78701 0.01716824126378924 TYSHGNYLF 9 Unmodified _TYSHGNYLF_ 0 0 0 ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7 ENSG00000124333|ENST00000286448|VAMP7 ENSG00000124333|ENST00000286448|VAMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.253173828125 2 551.253631 1100.49271 0.34995 0.00019291 -0.50681 -0.00027938 -0.15686 -8.6467E-05 551.2537777877608 48.854 0.34609 48.482 48.388 48.734 -0.37171 26 17 2 0 0 0 0.024882 1 26225 26225 58.679 18.721 1 6235000 67325 3777 44723 45735 78702 78702 -0.053517069705321774 TYSHGNYLF 9 Unmodified _TYSHGNYLF_ 0 0 0 ENSG00000124333|ENST00000286448|VAMP7;nc|ENSG00000292366|P51809-2|VAMP7 ENSG00000124333|ENST00000286448|VAMP7 ENSG00000124333|ENST00000286448|VAMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2531127929688 2 551.253631 1100.49271 1.1197 0.00061723 -0.98931 -0.00054536 0.13036 7.1864E-05 551.2528670782762 53.624 0.29926 47.82 47.659 47.958 -5.8042 26 18 2 0 0 0 0.010818 1 33860 33860 78.149 46.032 1 20084000 67326 3777 44723 45735 78703 78703 -0.053517069705321774 TYSHVGDRHI 10 Unmodified _TYSHVGDRHI_ 0 0 0 REV__ENST00000487903.5_1_13:113526059-113532532:+|nuORF REV__ENST00000487903.5_1_13:113526059-113532532:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5316467285156 3 395.53175 1183.57342 -0.64725 -0.00025601 -0.51536 -0.00020384 -1.1626 -0.00045985 395.5317618504599 14.851 0.093027 14.851 14.791 14.884 0 71 23 4 0 0 0 0.68719 1 7073 7073 2.086 0.89267 1 3510200 + 67327 27836 44724 45736 78704 78704 -0.011024259276155135 TYSIGFLRF 9 Unmodified _TYSIGFLRF_ 0 0 0 ENST00000474416.1_1_22:38622784-38627359:-|nuORF;ENST00000468535.5_1_7:1589488-1590526:-|nuORF;ENST00000474813.5_1_7:1589488-1595099:-|nuORF;ENST00000436674.5_1_22:38617478-38642853:-|nuORF;ENSG00000198792|ENST00000361906|TMEM184B;ENSG00000164855|ENST00000297477|TMEM184A ENST00000474416.1_1_22:38622784-38627359:-|nuORF ENST00000474416.1_1_22:38622784-38627359:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2979125976562 2 552.297842 1102.58113 0.83674 0.00046213 -0.24019 -0.00013266 0.59655 0.00032947 552.2979731484837 98.563 0.1857 92.388 92.28 92.465 -6.1757 37 13 4 0 0 0 0.009483 1 65349 65349 81.89 63.755 1 226140000 67328 7253 44725 45737 78705 78705 0.03394333339952027 TYSKKHFRI 9 Unmodified _TYSKKHFRI_ 0 0 0 nc|ENSG00000183765|O96017-2|CHEK2;nc|ENSG00000183765|O96017-6|CHEK2;nc|ENSG00000183765|O96017-5|CHEK2;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8931884765625 3 393.892619 1178.65603 -0.077942 -3.0701E-05 0.38762 0.00015268 0.30968 0.00012198 393.8930926882562 16.625 0.10727 16.63 16.568 16.675 0.0050564 12 5 3 0 0 0 0.45045 1 8360 8360 10.151 6.2742 1 601100 67329 16452 44726 45738 78706 78706 0.0738451587117197 TYSKKHFRI 9 Unmodified _TYSKKHFRI_ 0 0 0 nc|ENSG00000183765|O96017-2|CHEK2;nc|ENSG00000183765|O96017-6|CHEK2;nc|ENSG00000183765|O96017-5|CHEK2;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 nc|ENSG00000183765|O96017-2|CHEK2 MSMS AL20221201_MKP_PDAC_01 4 393.8927917480469 3 393.892619 1178.65603 NaN NaN NaN NaN NaN NaN NaN 17.602 1 15.016 14.516 15.516 -2.5866 0 0 0 0.12343 1 9219 9219 30.703 23.602 1 67330 16452 44726 45738 78707 78707 0.0738451587117197 TYSLKEYLTT 10 Unmodified _TYSLKEYLTT_ 0 0 0 ENST00000297875.6_1_X:37892863-37893016:+|nuORF ENST00000297875.6_1_X:37892863-37893016:+|nuORF ENST00000297875.6_1_X:37892863-37893016:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8798217773438 3 406.879933 1217.61797 NaN NaN NaN NaN NaN NaN NaN 9.8458 1 9.7561 9.2561 10.256 -0.08967 0 0 0 1.0061 1 4809 4809 0 0 1 67331 11527 44727 45739 78708 78708 0.01786540375178447 TYSLLEHV 8 Unmodified _TYSLLEHV_ 0 0 0 nc|ENSG00000158856|Q08495-3|DMTN;nc|ENSG00000158856|Q08495-4|DMTN;nc|ENSG00000158856|Q08495-2|DMTN;ENSG00000158856|ENST00000358242|DMTN;ENST00000518816.5_1_8:21924386-21926775:+|nuORF nc|ENSG00000158856|Q08495-3|DMTN nc|ENSG00000158856|Q08495-3|DMTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5211181640625 1 961.498923 960.491647 0.96368 0.00092657 0.32709 0.00031449 1.2908 0.0012411 961.498608515389 71.781 0.61732 65.606 65.324 65.941 -6.1757 111 33 4 0 0 0 0.61462 1 46797 46797 24.674 5.2349 1 519740000 67332 6613 44728 45740 78709 78709 0.00982078660570096 TYSLPKCIAVY 11 Unmodified _TYSLPKCIAVY_ 0 0 0 REV__ENSG00000172208|ENST00000624868|OR4X2 REV__ENSG00000172208|ENST00000624868|OR4X2 MSMS AL20221201_MKP_PDAC_01 4 629.3261108398438 2 629.331024 1256.6475 NaN NaN NaN NaN NaN NaN NaN 82.91 1 76.734 76.234 77.234 -6.1757 0 0 0 0.71476 1 54490 54490 16.149 6.0752 1 + 67333 22632 44729 45741 78710 78710 0.029437811196885377 TYSNSHGPYDS 11 Unmodified _TYSNSHGPYDS_ 0 0 0 ENSG00000269713|ENST00000698832|NBPF9;ENSG00000162825|ENST00000698833|NBPF20;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000271383|ENST00000651566|NBPF19;ENST00000472811.1_1:144816515-144818018:+|nuORF ENSG00000269713|ENST00000698832|NBPF9 ENSG00000269713|ENST00000698832|NBPF9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2501220703125 2 614.249274 1226.484 0.729 0.00044779 0.11041 6.7818E-05 0.83941 0.00051561 614.2497143048956 40.516 0.18961 40.213 40.108 40.297 -0.30304 18 8 3 0 0 0 0.67037 1 21429 21429 8.7454 3.9894 1 1762500 67334 6918 44730 45742 78711 78711 -0.12018725397661001 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(89)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.290771484375 2 594.291899 1186.56925 -0.19728 -0.00011724 -0.54122 -0.00032164 -0.7385 -0.00043888 594.2918177743659 41.871 0.2715 41.564 41.411 41.682 -0.30682 39 12 4 0 0 0 0.0093042 1 22171 22171 88.954 62.07 1 56450000 67335 5341;30196 44731 45743 78712 78712 981 -0.016576514655525898 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(92)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2910766601562 2 594.291899 1186.56925 -0.050551 -3.0042E-05 -1.0035 -0.00059638 -1.0541 -0.00062642 594.2915300535842 42.131 0.24057 41.824 41.701 41.941 -0.30682 33 11 4 0 0 0 0.0073675 1 22391 22391 92.491 56.364 1 58449000 67336 5341;30196 44731 45743 78713 78713 981 -0.016576514655525898 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(79)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2908935546875 2 594.291899 1186.56925 -0.38 -0.00022583 -0.39801 -0.00023653 -0.77801 -0.00046237 594.2918520529292 41.607 0.25679 41.605 41.444 41.701 -0.0017929 34 11 4 0 0 0 0.016642 1 22208 22208 78.728 42.601 1 34605000 67337 5341;30196 44731 45743 78714 78714 981 -0.016576514655525898 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(54)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.2913818359375 2 594.291899 1186.56925 -0.30135 -0.00017909 -0.29973 -0.00017813 -0.60108 -0.00035722 594.2918384322219 41.875 0.26722 41.866 41.714 41.981 -0.0088196 39 12 4 0 0 0 0.067957 1 22426 22426 53.833 29.159 1 33911000 67338 5341;30196 44731 45743 78715 78715 981 -0.016576514655525898 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(58)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2923583984375 2 594.291899 1186.56925 0.097709 5.8067E-05 0.030753 1.8276E-05 0.12846 7.6344E-05 594.2920738949998 46.644 0.38585 41.563 41.345 41.731 -5.0805 117 74 2 0 0 0 0.051223 1 28956 28956 57.722 28.64 1 116000000 67339 5341;30196 44731 45743 78716 78716 981 -0.016576514655525898 TYSPALNKMF 10 Oxidation (M) _TYSPALNKM(Oxidation (M))F_ TYSPALNKM(1)F TYSPALNKM(100)F 0 0 1 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7935791015625 2 594.291899 1186.56925 0.51693 0.0003072 0.33994 0.00020203 0.85687 0.00050923 594.2921331612456 47.128 0.47266 42.048 41.877 42.35 -5.0805 90 35 3 0 0 0 0.0022539 2 29174 29174;29304 103.75 69.646 1 77844000 67340 5341;30196 44731 45743 78717;78718 78717 981 -0.016576514655525898 TYSPALNKMF 10 Unmodified _TYSPALNKMF_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2945556640625 2 586.294442 1170.57433 0.30129 0.00017664 0.51755 0.00030343 0.81883 0.00048008 586.2952032429163 57.755 0.45061 57.265 57.126 57.577 -0.48974 36 21 3 0 0 0 0.067957 1 31367 31367 53.833 33.379 1 5260100 67341 5341;30196 44731 45744 78719 78719 -0.004133476029210215 TYSPALNKMF 10 Unmodified _TYSPALNKMF_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.2947998046875 2 586.294442 1170.57433 0.99662 0.00058431 -0.40131 -0.00023528 0.59532 0.00034903 586.294350760383 57.394 0.33347 57.327 57.161 57.494 -0.066036 47 16 4 0 0 0 0.024115 2 31197 31197;31299 71.922 45.039 1 11556000 67342 5341;30196 44731 45744 78720;78721 78720 -0.004133476029210215 TYSPALNKMF 10 Unmodified _TYSPALNKMF_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.V217Gfs*31|1|0.48|ENSG00000141510|chr17:7674881-7674882|-/CC|frameshift_variant;TP53|p.Y220*|1|0.25|ENSG00000141510|chr17:7674862-7674872|AGGCGGCTCAT/-|frameshift_variant;TP53|p.H178Pfs*3|1|0.22|ENSG00000141510|chr17:7675079-7675080|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.09|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.06|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.P152Afs*14|1|0.17|ENSG00000141510|chr17:7675146-7675158|GGGTGCCGGGCGG/-|frameshift_variant;TP53|p.C135Y|1|0.16|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53;TP53|p.R213Dfs*34|1|0.18|ENSG00000141510|chr17:7674895-7674895|A/-|frameshift_variant ENSG00000141510|ENST00000269305|TP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2947998046875 2 586.294442 1170.57433 0.75778 0.00044428 0.044137 2.5877E-05 0.80192 0.00047016 586.2944132637537 63.118 0.92795 56.942 56.636 57.564 -6.1757 98 50 2 0 0 0 0.024115 3 40734 40734;40866;41011 71.922 42.221 1 363760000 67343 5341;30196 44731 45744 78722;78723;78724 78722 -0.004133476029210215 TYSPCRKLF 9 Unmodified _TYSPCRKLF_ 0 0 0 REV__ENSG00000237521|ENST00000456448|OR7E24 REV__ENSG00000237521|ENST00000456448|OR7E24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2929077148438 2 557.789327 1113.5641 0.89335 0.0004983 3.9674 0.002213 4.8608 0.0027113 558.2921697609481 73.608 0.25581 73.132 72.996 73.252 -0.47588 14 10 2 0 0 0 0.54444 1 40306 40306 4.756 0 1 798670 + 67344 24434 44732 45745 78725 78725 0.01186089462498785 TYSPFGDSPLF 11 Unmodified _TYSPFGDSPLF_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98;ENST00000397013.2_1_11:3752752-3765856:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.78857421875 2 615.787504 1229.56045 0.71256 0.00043878 -0.31348 -0.00019304 0.39908 0.00024575 615.7873836703084 99.177 0.17305 93.001 92.908 93.081 -6.1757 14 9 2 0 0 0 0.0111 1 65982 65982 92.653 70.907 1 20785000 67345 2734 44733 45746 78726 78726 -0.04514301830386103 TYSQETCENL 10 Unmodified _TYSQETCENL_ 0 0 0 nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 nc|ENSG00000164506|Q5T5C0-3|STXBP5 MSMS AL20221201_MKP_PDAC_01 4 396.5028381347656 3 396.501016 1186.48122 NaN NaN NaN NaN NaN NaN NaN 79.945 1 73.769 73.269 74.269 -6.1757 0 0 0 0.71157 1 52425 52425 10.315 0 1 67346 7201 44734 45747 78727 78727 -0.10456316846807567 TYSQVIALI 9 Unmodified _TYSQVIALI_ 0 0 0 ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENSG00000107863|ENST00000396432|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2942810058594 2 504.292225 1006.5699 0.045901 2.3148E-05 1.0031 0.00050585 1.049 0.000529 504.29279065696153 84.739 0.44215 84.239 84.02 84.462 -0.49962 57 19 4 0 0 0 0.039985 2 46335 46335;46434 49.933 10.183 1 5029900 67347 10911;2523;13985 44735 45748 78728;78729 78728 0.06687511245809219 TYSQVIALI 9 Unmodified _TYSQVIALI_ 0 0 0 ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENSG00000107863|ENST00000396432|ARHGAP21;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23;nc|ENSG00000275832|Q9P227-2|ARHGAP23 ENST00000476499.1_1_10:24918849-25010828:-|nuORF;ENSG00000107863|ENST00000396432|ARHGAP21;ENSG00000275832|ENST00000622683|ARHGAP23 ENSG00000275832|ENST00000622683|ARHGAP23 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.292225 1006.5699 0.4895 0.00024685 2.9996 0.0015127 3.4891 0.0017595 504.2941808783726 84.268 0.1886 84.268 84.206 84.395 0 0.014181 0.0017882 NaN 49.933 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 290380 67348 10911;2523;13985 44735 45748 0.06687511245809219 TYSRPLTF 8 Unmodified _TYSRPLTF_ 0 0 0 ENSG00000182591|ENST00000332378|KRTAP11-1 ENSG00000182591|ENST00000332378|KRTAP11-1 ENSG00000182591|ENST00000332378|KRTAP11-1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.5696716308594 2 492.761092 983.507631 1.0031 0.00049428 -0.51376 -0.00025316 0.48932 0.00024112 492.7613308181251 50.662 0.22653 50.248 50.092 50.318 -0.41351 16 10 2 0 0 0 8.7369 1 27220 27220 8.5933 1.304 1 1483600 67349 9070 44736 45749 78730 78730 0.015217848974771186 TYSSFGMTEAW 11 Unmodified _TYSSFGMTEAW_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|17 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|2|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.2693481445312 2 640.268621 1278.52269 0.29726 0.00019033 0.28391 0.00018178 0.58118 0.00037211 640.2684603978953 75.051 0.59523 75.097 74.813 75.409 0.045959 89 28 4 0 0 0 0.71036 1 41384 41384 3.2813 0.28607 1 33440000 + 67350 16803 44737 45750 78731 78731 -0.10543136087494531 TYSSGHNRLYF 11 Unmodified _TYSSGHNRLYF_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.8828430175781 3 448.882559 1343.62585 -0.45087 -0.00020239 0.54792 0.00024595 0.097048 4.3563E-05 448.8829218279392 36.721 0.22092 36.471 36.358 36.579 -0.2497 16 9 3 0 0 0 0.2736 1 19285 19285 28.181 21.989 1 4615800 67351 8765 44738 45751 78732 78732 -0.032218875846638184 TYSSGHNRLYF 11 Unmodified _TYSSGHNRLYF_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.883056640625 3 448.882559 1343.62585 0.1826 8.1964E-05 -0.20417 -9.1646E-05 -0.021569 -9.6818E-06 448.88277963216865 36.421 0.15807 36.443 36.295 36.453 0.021545 11 6 2 0 0 0 0.4121 1 19293 19293 20.871 15.974 1 1560900 67352 8765 44738 45751 78733 78733 -0.032218875846638184 TYSSGHNRLYF 11 Unmodified _TYSSGHNRLYF_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2164611816406 3 448.882559 1343.62585 0.41322 0.00018549 0.030988 1.391E-05 0.44421 0.0001994 448.88256777590567 39.917 0.26108 35.388 35.155 35.416 -4.5294 28 16 2 0 0 0 0.18957 2 23648 23648;23671 32.616 22.089 1 23976000 67353 8765 44738 45751 78734;78735 78734 -0.032218875846638184 TYSSGHNRLYF 11 Unmodified _TYSSGHNRLYF_ 0 0 0 ENST00000578106.1_1_17:30321573-30326019:+|nuORF;ENSG00000178691|ENST00000322652|SUZ12 ENST00000578106.1_1_17:30321573-30326019:+|nuORF ENST00000578106.1_1_17:30321573-30326019:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 448.8827514648438 3 448.882559 1343.62585 NaN NaN NaN NaN NaN NaN NaN 39.977 1 35.447 34.947 35.947 -4.5294 0 0 0 0.82089 1 23806 23806 11.065 6.3494 1 67354 8765 44738 45751 78736 78736 -0.032218875846638184 TYSSSEYRY 9 Unmodified _TYSSSEYRY_ 0 0 0 REV__nc|ENSG00000104067|Q07157-2|TJP1 REV__nc|ENSG00000104067|Q07157-2|TJP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2489624023438 2 578.251286 1154.48802 NaN NaN NaN NaN NaN NaN NaN 35.062 1 35.062 34.562 35.562 0 0 0 0 0.82739 1 18517 18517 4.3292 0 1 + 67355 18336 44739 45752 78737 78737 -0.08304635903937196 TYSSSYEQF 9 Unmodified _TYSSSYEQF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2315673828125 2 556.232561 1110.45057 0.056817 3.1604E-05 0.60289 0.00033534 0.6597 0.00036695 556.2328100041747 41.776 0.32808 41.776 41.573 41.901 0 34 16 3 0 0 0 0.023164 1 22517 22517 60.39 20.432 1 13141000 67356 4682 44740 45753 78738 78738 -0.10023727169550511 TYSTEPNNL 9 Unmodified _TYSTEPNNL_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28 ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.73828125 2 519.740554 1037.46655 -0.785 -0.000408 -0.39171 -0.00020359 -1.1767 -0.00061159 519.7403302510606 32.24 0.31079 32.24 32.063 32.374 0 39 15 3 0 0 0 0.038285 1 16812 16812 50.855 33.913 1 14770000 67357 2548 44741 45754 78739 78739 -0.050680209326628756 TYSTEPNNL 9 Unmodified _TYSTEPNNL_ 0 0 0 ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28;nc|ENSG00000108107|P46779-4|RPL28;nc|ENSG00000108107|P46779-5|RPL28 ENSG00000108107|ENST00000344063|RPL28 ENSG00000108107|ENST00000344063|RPL28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7401123046875 2 519.740554 1037.46655 1.2272 0.00063781 -1.1509 -0.00059817 0.076271 3.9641E-05 519.7398189054385 37.839 0.49842 33.47 33.157 33.655 -4.3689 69 29 3 0 0 0 0.013323 2 22265 22146;22265 71.134 38.828 1 31358000 67358 2548 44741 45754 78740;78741 78741 -0.050680209326628756 TYSYENEFL 9 Unmodified _TYSYENEFL_ 0 0 0 REV__ENSG00000162745|ENST00000294794|OLFML2B REV__ENSG00000162745|ENST00000294794|OLFML2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2567749023438 2 583.256037 1164.49752 0.087507 5.1039E-05 1.1501 0.00067078 1.2376 0.00072182 583.2567679565374 65.517 0.37116 65.517 65.347 65.718 0 34 14 3 0 0 0 0.28047 1 36516 36516 18.135 2.2878 1 7149600 + 67359 21685 44742 45755 78742 78742 -0.07814867618412791 TYSYSFFHF 9 Unmodified _TYSYSFFHF_ 0 0 0 ENSG00000111897|ENST00000339697|SERINC1;ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENSG00000111897|ENST00000339697|SERINC1;ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7636108398438 2 599.763832 1197.51311 -0.10695 -6.4143E-05 1.5262 0.00091538 1.4193 0.00085123 599.7641795225383 80.305 0.11674 80.363 80.293 80.41 0.057587 8 5 2 0 0 0 0.013472 1 44400 44400 70.716 51.459 1 10248000 67360 2845;7775 44743 45756 78743 78743 -0.0777453631071694 TYSYSFFHF 9 Unmodified _TYSYSFFHF_ 0 0 0 ENSG00000111897|ENST00000339697|SERINC1;ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2 ENSG00000111897|ENST00000339697|SERINC1;ENST00000491976.1_1_1:31888748-31907043:+|nuORF ENST00000491976.1_1_1:31888748-31907043:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 599.763916015625 2 599.763832 1197.51311 NaN NaN NaN NaN NaN NaN NaN 95.646 1 89.47 88.97 89.97 -6.1757 0 0 0 0.029091 1 63359 63359 67.344 44.608 1 67361 2845;7775 44743 45756 78744 78744 -0.0777453631071694 TYTDLLSVI 9 Unmodified _TYTDLLSVI_ 0 0 0 ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.283935546875 2 512.78169 1023.54883 0.25875 0.00013268 0.39471 0.0002024 0.65346 0.00033508 512.781617319926 93.432 0.19423 93.432 93.336 93.53 0 17 10 2 0 0 0 0.54444 1 51636 51636 4.756 0 1 422590 67362 7671 44744 45757 78745 78745 0.0379950114629537 TYTDLLSVI 9 Unmodified _TYTDLLSVI_ 0 0 0 ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7815551757812 2 512.78169 1023.54883 0.28653 0.00014693 0.25002 0.0001282 0.53654 0.00027513 512.7817522891312 93.942 0.33175 93.522 93.325 93.657 -0.42044 36 14 3 0 0 0 0.078417 2 51349 51255;51349 38.151 7.9264 1 2675000 67363 7671 44744 45757 78746;78747 78747 0.0379950114629537 TYTDLLSVI 9 Unmodified _TYTDLLSVI_ 0 0 0 ENST00000526447.1_1_11:67274830-67275269:-|nuORF;ENSG00000167797|ENST00000301488|CDK2AP2;ENST00000525402.5_1_11:67274418-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF ENST00000526447.1_1_11:67274830-67275269:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.7838134765625 2 512.78169 1023.54883 1.2299 0.00063069 1.3462 0.0006903 2.5761 0.001321 512.782554753678 100.08 0.15855 93.907 93.819 93.978 -6.1757 24 9 3 0 0 0 0.023164 1 66828 66828 60.39 15.983 1 59818000 67364 7671 44744 45757 78748 78748 0.0379950114629537 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.3011474609375 2 581.300581 1160.58661 0.23189 0.0001348 1.0589 0.00061556 1.2908 0.00075036 581.301171498177 75.639 0.31194 75.639 75.5 75.812 0 29 12 3 0 0 0 0.082934 2 42034 42034;42137 37.075 15.538 1 3491600 67365 9843 44745 45758 78749;78750 78749 0.012740121317847297 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3010864257812 2 581.300581 1160.58661 0.3769 0.00021909 -0.16646 -9.6765E-05 0.21044 0.00012233 581.3003901966863 76.016 0.63519 75.536 75.274 75.909 -0.47945 105 26 5 0 0 0 0.024189 3 41524 41524;41630;41732 59.368 25.507 1 170400000 67366 9843 44745 45758 78751;78752;78753 78751 0.012740121317847297 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3013916015625 2 581.300581 1160.58661 0.68994 0.00040106 -0.30805 -0.00017907 0.38189 0.00022199 581.3003126990966 75.428 0.63837 75.473 75.224 75.862 0.045967 118 29 6 0 0 0 0.024189 3 41502 41502;41605;41702 59.368 31.74 1 319250000 67367 9843 44745 45758 78754;78755;78756 78754 0.012740121317847297 TYTDRVFFL 9 Unmodified _TYTDRVFFL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3004760742188 2 581.300581 1160.58661 0.48807 0.00028372 0.095015 5.5233E-05 0.58309 0.00033895 581.3005759460051 92.892 1.5018 86.717 85.612 87.114 -6.1757 312 94 5 0 0 0 0.011291 8 60901 60777;60901;61026;61153;61279;61400;61534;61666 76.825 36.57 1 776930000 67368 9843 44745 45758 78757;78758;78759;78760;78761;78762;78763;78764 78758 0.012740121317847297 TYTDVTPRQF 10 Unmodified _TYTDVTPRQF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3023681640625 2 614.303852 1226.59315 0.73258 0.00045003 -0.84731 -0.00052051 -0.11473 -7.0478E-05 614.3032501989283 40.682 0.36932 40.379 40.193 40.563 -0.30304 54 17 4 0 0 0 0.0036758 2 21469 21469;21568 128.93 81.184 1 24244000 67369 1382 44746 45759 78765;78766 78765 -0.011080947075242875 TYTDVTPRQFF 11 Unmodified _TYTDVTPRQFF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.8373413085938 2 687.838059 1373.66157 -0.37548 -0.00025827 0.27234 0.00018733 -0.10314 -7.0941E-05 687.8382299567377 61.225 0.40554 60.736 60.558 60.963 -0.48932 60 19 4 0 0 0 8.6319E-10 2 33298 33298;33399 117.84 75.882 1 22460000 67370 1382 44747 45760 78767;78768 78767 -0.010318501276969982 TYTDVTPRQFF 11 Unmodified _TYTDVTPRQFF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 687.8364868164062 2 687.838059 1373.66157 0.46613 0.00032062 0.029383 2.0211E-05 0.49552 0.00034084 687.8380237940181 60.84 0.35317 60.797 60.594 60.947 -0.04351 45 17 3 0 0 0 9.5168E-10 2 33142 33142;33248 117.76 82.829 1 27072000 67371 1382 44747 45760 78769;78770 78769 -0.010318501276969982 TYTDVTPRQFF 11 Unmodified _TYTDVTPRQFF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 688.3396606445312 2 687.838059 1373.66157 0.66513 0.0004575 -0.072405 -4.9803E-05 0.59272 0.0004077 687.8380572319325 67.012 0.45673 60.836 60.614 61.071 -6.1757 63 25 3 0 0 0 2.9515999999999997E-43 2 43663 43525;43663 182.24 132.68 1 41049000 67372 1382 44747 45760 78771;78772 78772 -0.010318501276969982 TYTDVTPRQFF 11 Unmodified _TYTDVTPRQFF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.8380126953125 2 687.838059 1373.66157 0.67005 0.00046089 -0.01392 -9.5749E-06 0.65613 0.00045131 687.8380662435021 67.52 0.60152 61.345 61.071 61.673 -6.1757 80 33 3 0 0 0 2.9833E-52 3 43935 43799;43935;44074 195.04 153.08 1 41903000 67373 1382 44747 45760 78773;78774;78775 78774 -0.010318501276969982 TYTDVTPRQFF 11 Unmodified _TYTDVTPRQFF_ 0 0 0 ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF ENSG00000084090|ENST00000337288|STARD7 ENSG00000084090|ENST00000337288|STARD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.8387451171875 2 687.838059 1373.66157 0.67683 0.00046555 -0.14569 -0.00010021 0.53114 0.00036534 687.8378251478888 68.378 0.76431 62.203 61.754 62.518 -6.1757 111 45 3 0 0 0 2.9833E-52 3 44399 44399;44536;44673 195.04 153.08 1 50949000 67374 1382 44747 45760 78776;78777;78778 78776 -0.010318501276969982 TYTFLKETF 9 Unmodified _TYTFLKETF_ 0 0 0 ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171;ENST00000470191.5_1_9:15845666-15971831:+|nuORF ENSG00000164989|ENST00000380701|CCDC171 ENSG00000164989|ENST00000380701|CCDC171 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2943725585938 2 575.294965 1148.57538 0.48211 0.00027736 -0.61922 -0.00035624 -0.13711 -7.888E-05 575.2950457603512 98.996 0.20276 98.803 98.691 98.894 -0.19321 13 6 3 0 0 0 0.41742 1 54074 54074 11.64 0 1 736940 67375 7277 44748 45761 78779 78779 0.007031900375977784 TYTGQLFCL 9 Carbamidomethyl (C) _TYTGQLFC(Carbamidomethyl (C))L_ TYTGQLFC(1)L TYTGQLFC(89)L 0 1 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7650756835938 2 551.765517 1101.51648 0.97479 0.00053786 -0.86604 -0.00047785 0.10875 6.0003E-05 551.7648669743909 87.456 0.34596 81.28 81.13 81.476 -6.1757 26 18 2 0 0 0 0.008678 1 57718 57718 88.904 59.822 1 17657000 67376 3760 44749 45762 78780 78780 379 -0.030216095283549294 TYTHRNELF 9 Unmodified _TYTHRNELF_ 0 0 0 ENST00000422956.6_1_2:113993137-114016997:+|nuORF;ENST00000451179.5_1_2:113993110-114020957:+|nuORF;ENST00000333145.9_1_2:113993130-114016997:+|nuORF ENST00000422956.6_1_2:113993137-114016997:+|nuORF ENST00000422956.6_1_2:113993137-114016997:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1966857910156 3 394.196367 1179.56727 NaN NaN NaN NaN NaN NaN NaN 31.846 1 31.846 31.346 32.346 0 0 0 0 0.82739 1 16606 16606 2.4985 1.3051 1 67377 11877 44750 45763 78781 78781 -0.015329441591575232 TYTMILNLL 9 Oxidation (M) _TYTM(Oxidation (M))ILNLL_ TYTM(1)ILNLL TYTM(85)ILNLL 0 0 1 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.30029296875 2 549.299193 1096.58383 1.0989 0.00060361 -0.27459 -0.00015083 0.82429 0.00045278 549.2991461921501 100.36 0.20337 94.188 94.088 94.291 -6.1757 36 12 4 0 0 0 0.0090851 1 67180 67180 85.357 49.313 1 72162000 67378 10272 44751 45764 78782 78782 1669 0.03940420682579315 TYTNEQLFL 9 Unmodified _TYTNEQLFL_ 0 0 0 REV__ENST00000273317.4_1_3:45718871-45719018:+|nuORF REV__ENST00000273317.4_1_3:45718871-45719018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.782470703125 2 564.782222 1127.54989 0.26877 0.0001518 -0.012819 -7.24E-06 0.25596 0.00014456 564.7823259886201 62.836 0.25913 62.836 62.704 62.963 0 16 10 2 0 0 0 0.53557 1 35049 35049 8.5933 0 1 945650 + 67379 25157 44752 45765 78783 78783 -0.008782844847928573 TYTNPVHASVN 11 Unmodified _TYTNPVHASVN_ 0 0 0 REV__nc|ENSG00000086102|Q12986-3|NFX1 REV__nc|ENSG00000086102|Q12986-3|NFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.7954711914062 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.44182 1 50664 50664 19.362 0.10495 1 114760000 + 67380 17765 44753 45766 78784 78784 -0.019972653673448804 TYTQLVRLI 9 Unmodified _TYTQLVRLI_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8333129882812 2 553.832049 1105.64954 1.3415 0.00074298 -0.16448 -9.1093E-05 1.177 0.00065189 553.8319532788258 71.005 0.25922 71.041 70.894 71.153 0.035515 20 11 2 0 0 0 0.047196 1 39120 39120 46.021 27.886 1 1989300 67381 5575 44754 45767 78785 78785 0.10094577919812764 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.5294494628906 3 386.529458 1156.56654 0.039162 1.5137E-05 -0.64621 -0.00024978 -0.60704 -0.00023464 386.52959276827994 38.055 0.51145 37.784 37.638 38.15 -0.27133 65 23 4 0 0 0 0.094149 1 20010 20010 26.021 15.221 1 8891700 67382 8089 44755 45768 78786 78786 -0.005477388081999379 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2914428710938 2 579.290548 1156.56654 0.062079 3.5962E-05 -0.34765 -0.00020139 -0.28557 -0.00016543 579.290058088144 38.066 0.28793 37.795 37.681 37.969 -0.27133 27 13 3 0 0 0 0.14594 1 20036 20036 28.495 14.588 1 2315800 67383 8089 44755 45768 78787 78787 -0.005477388081999379 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5288391113281 3 386.529458 1156.56654 -0.12035 -4.652E-05 -0.68119 -0.0002633 -0.80154 -0.00030982 386.529215801902 37.676 0.32917 37.693 37.552 37.881 0.01704 35 15 3 0 0 0 0.20428 1 20019 20019 21.59 8.7175 1 8407000 67384 8089 44755 45768 78788 78788 -0.005477388081999379 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5294189453125 3 386.529458 1156.56654 0.63062 0.00024375 -0.53889 -0.0002083 0.091735 3.5458E-05 386.52929489891545 41.47 0.48306 36.862 36.612 37.095 -4.6079 53 31 2 0 0 0 0.19127 2 24817 24817;24955 17.443 7.8987 1 37448000 67385 8089 44755 45768 78789;78790 78789 -0.005477388081999379 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 579.2891845703125 2 579.290548 1156.56654 NaN NaN NaN NaN NaN NaN NaN 41.4 1 36.792 36.292 37.292 -4.6079 0 0 0 0.016321 1 24856 24856 83.429 49.027 1 67386 8089 44755 45768 78791 78791 -0.005477388081999379 TYTRHGYIF 9 Unmodified _TYTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 579.290548 1156.56654 0.3078 0.0001783 -1.2842 -0.00074393 -0.97642 -0.00056563 579.7906585361395 37.742 0.24573 37.759 37.614 37.859 0.017036 -0.017926 -0.00060043 NaN 28.495 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3182100 67387 8089 44755 45768 -0.005477388081999379 TYTSARTLL 9 Unmodified _TYTSARTLL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2846069335938 2 513.284931 1024.55531 -0.024556 -1.2604E-05 0.19659 0.00010091 0.17203 8.8303E-05 513.2848371810145 41.238 0.24842 40.935 40.798 41.047 -0.30304 28 11 3 0 0 0 0.026499 1 21817 21817 57.249 22.847 1 7049000 67388 7502 44756 45769 78792 78792 0.04401439097682669 TYTSARTLL 9 Unmodified _TYTSARTLL_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2850341796875 2 513.284931 1024.55531 0.65206 0.00033469 0.99253 0.00050945 1.6446 0.00084414 513.2854967483336 45.779 0.46534 40.825 40.626 41.091 -4.9549 61 30 3 0 0 0 0.044296 1 28082 28082 47.594 7.6447 1 22804000 67389 7502 44756 45769 78793 78793 0.04401439097682669 TYTSNLVRL 9 Unmodified _TYTSNLVRL_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7987670898438 2 533.798206 1065.58186 -0.013459 -7.1843E-06 1.6588 0.00088547 1.6454 0.00087829 533.7990693935837 51.239 0.41162 50.825 50.557 50.969 -0.41351 61 20 4 0 0 0 0.010611 1 27596 27596 78.728 44.626 1 27508000 67390 3197 44757 45770 78794 78794 0.051691279890064834 TYTSNLVRL 9 Unmodified _TYTSNLVRL_ 0 0 0 ENSG00000116138|ENST00000375847|DNAJC16;nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF ENSG00000116138|ENST00000375847|DNAJC16 ENSG00000116138|ENST00000375847|DNAJC16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7991943359375 2 533.798206 1065.58186 0.53703 0.00028666 1.6287 0.00086941 2.1658 0.0011561 533.7991554993494 56.644 0.60353 50.667 50.338 50.941 -5.9769 97 34 4 0 0 0 0.0071894 3 36171 36038;36171;36298 111.29 55.784 1 136260000 67391 3197 44757 45770 78795;78796;78797 78796 0.051691279890064834 TYTSPPPQF 9 Unmodified _TYTSPPPQF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.760498046875 2 519.250557 1036.48656 -0.01232 -6.3972E-06 2.9161 0.0015142 2.9038 0.0015078 519.2526659167245 45.233 0.31009 45.233 44.959 45.269 0 26 15 2 0 0 0 0.18882 1 24651 24651 15.847 6.4997 1 10784000 67392 2379 44758 45771 78798 78798 -0.03022225202039408 TYTSPPPQF 9 Unmodified _TYTSPPPQF_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MSMS AL20221201_MKP_PDAC_01 4 519.2514038085938 2 519.250557 1036.48656 NaN NaN NaN NaN NaN NaN NaN 52.373 1 46.639 46.139 47.139 -5.7345 0 0 0 0.023279 1 33059 33059 74.423 34.465 1 67393 2379 44758 45771 78799 78799 -0.03022225202039408 TYTSYLDKF 9 Unmodified _TYTSYLDKF_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.2767944335938 2 569.276772 1136.53899 -0.79745 -0.00045397 0.92919 0.00052897 0.13174 7.4998E-05 569.2771953904697 56.292 0.19453 55.806 55.728 55.923 -0.48554 23 9 3 0 0 0 0.017075 1 30561 30561 66.457 35.82 1 7540000 67394 1010 44759 45772 78800 78800 -0.023816868590984086 TYTSYLDKF 9 Unmodified _TYTSYLDKF_ 0 0 0 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 ENSG00000069956|ENST00000261845|MAPK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.278076171875 2 569.276772 1136.53899 0.67382 0.00038359 0.53611 0.00030519 1.2099 0.00068878 569.2777894859685 61.928 0.46197 55.752 55.576 56.038 -6.1757 38 25 2 0 0 0 0.013118 1 39942 39942 71.708 38.922 1 20925000 67395 1010 44759 45772 78801 78801 -0.023816868590984086 TYTTRIHLV 9 Unmodified _TYTTRIHLV_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5449829101562 3 368.545108 1102.61349 -0.039308 -1.4487E-05 0.18742 6.9073E-05 0.14811 5.4586E-05 368.54507242239947 39.303 0.23936 39.016 38.904 39.143 -0.28687 21 11 3 0 0 0 0.1685 1 20740 20740 37.075 19.632 1 4943000 67396 9906 44760 45773 78802 78802 0.06629120742945815 TYTTRIHLV 9 Unmodified _TYTTRIHLV_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.5454711914062 3 368.545108 1102.61349 1.3017 0.00047972 0.079683 2.9367E-05 1.3813 0.00050909 368.54518736316294 43.389 0.36288 38.624 38.525 38.888 -4.7648 34 23 2 0 0 0 0.40476 1 26340 26340 16.566 10.782 1 15683000 67397 9906 44760 45773 78803 78803 0.06629120742945815 TYTVKIVAI 9 Unmodified _TYTVKIVAI_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.3102111816406 2 504.310418 1006.60628 -0.5642 -0.00028453 -0.90981 -0.00045883 -1.474 -0.00074336 504.30964687367384 60.587 0.42542 60.098 59.97 60.395 -0.48932 39 20 3 0 0 0 0.008513 1 32979 32979 99.755 69.119 1 7491900 67398 674 44761 45774 78804 78804 0.10324388142510088 TYTVKIVAI 9 Unmodified _TYTVKIVAI_ 0 0 0 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 ENSG00000046604|ENST00000261590|DSG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.3093566894531 2 504.310418 1006.60628 NaN NaN NaN NaN NaN NaN NaN 60.212 1 60.158 59.658 60.658 -0.053062 0 0 0 0.053277 1 32836 32836 56.177 35.723 1 67399 674 44761 45774 78805 78805 0.10324388142510088 TYTYFLLTL 9 Unmodified _TYTYFLLTL_ 0 0 0 ENSG00000186886|ENST00000641440|OR5D3P ENSG00000186886|ENST00000641440|OR5D3P ENSG00000186886|ENST00000641440|OR5D3P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8043212890625 2 567.807708 1133.60086 NaN NaN NaN NaN NaN NaN NaN 77.606 1 77.123 76.623 77.623 -0.4826 0 0 0 0.6032 1 42486 42486 12.532 5.2423 1 67400 9517 44762 45775 78806 78806 0.03940664560059304 TYVAHVDLAL 10 Unmodified _TYVAHVDLAL_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8697204589844 3 367.86948 1100.58661 0.086442 3.1799E-05 0.40104 0.00014753 0.48748 0.00017933 367.8695373210736 45.669 0.27586 45.669 45.527 45.803 0 33 13 3 0 0 0 0.66569 1 24982 24982 3.5871 0 1 20400000 67401 2180 44763 45776 78807 78807 0.04034012131751297 TYVCKECGKSF 11 Unmodified _TYVCKECGKSF_ 0 0 0 ENSG00000158691|ENST00000684592|ZSCAN12 ENSG00000158691|ENST00000684592|ZSCAN12 ENSG00000158691|ENST00000684592|ZSCAN12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.1939086914062 3 422.19487 1263.56278 1.2865 0.00054317 -1.4324 -0.00060474 -0.14584 -6.1571E-05 422.19393617795856 92.328 1.0112 86.152 85.371 86.382 -6.1757 137 59 4 0 0 0 0.59689 1 60675 60675 6.2344 0.36622 1 19330000 67402 6603 44764 45777 78808 78808 -0.05845912688573662 TYVEERFPL 9 Unmodified _TYVEERFPL_ 0 0 0 REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF REV__ENST00000489366.2_1_1:46871719-46874871:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.294189453125 2 577.298039 1152.58152 1.3791 0.00079617 -0.88302 -0.00050977 0.49612 0.00028641 577.2974353223285 100.12 0.30314 93.942 93.755 94.058 -6.1757 45 16 4 0 0 0 0.39863 1 66948 66948 12.532 0 1 121700000 + 67403 19109 44765 45778 78809 78809 0.011337082691625255 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8218994140625 2 560.821681 1119.62881 0.29172 0.0001636 -0.55585 -0.00031173 -0.26413 -0.00014813 560.8215229915087 64.937 0.32713 64.937 64.745 65.072 0 21 15 2 0 0 0 0.10247 1 36216 36216 32.786 14.639 1 8365800 67404 763 44766 45779 78810 78810 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8217163085938 2 560.821681 1119.62881 0.40161 0.00022523 -0.43339 -0.00024305 -0.031782 -1.7824E-05 560.8214816729674 65.372 0.46129 64.888 64.64 65.101 -0.48428 57 21 5 0 0 0 0.047788 2 35726 35618;35726 45.7 22.963 1 132780000 67405 763 44766 45779 78811;78812 78812 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8223266601562 2 560.821681 1119.62881 1.0343 0.00058006 -0.48035 -0.00026939 0.55395 0.00031067 560.8213866743992 64.834 0.33978 64.834 64.677 65.016 7.6294E-06 28 16 2 0 0 0 0.013041 2 35599 35491;35599 71.922 40.654 1 20141000 67406 763 44766 45779 78813;78814 78814 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8226318359375 2 560.821681 1119.62881 1.1011 0.00061752 -0.24752 -0.00013882 0.85358 0.00047871 560.8216956472871 70.115 1.0157 63.939 63.631 64.646 -6.1757 107 56 2 0 0 0 0.0074135 5 46042 45659;45781;45917;46042;46171 110.67 59.984 1 65540000 67407 763 44766 45779 78815;78816;78817;78818;78819 78818 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8223876953125 2 560.821681 1119.62881 1.2587 0.00070592 -0.18501 -0.00010376 1.0737 0.00060216 560.8217606664305 72.033 1.0685 65.857 65.111 66.179 -6.1757 113 56 3 0 0 0 0.0024112 4 47069 46935;47069;47205;47321 129.77 75.94 1 73629000 67408 763 44766 45779 78820;78821;78822;78823 78821 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.822265625 2 560.821681 1119.62881 1.0743 0.00060251 -0.26712 -0.0001498 0.80722 0.00045271 560.8218344412845 73.355 2.0391 67.179 66.618 68.657 -6.1757 183 103 3 0 0 0 0.0047067 10 48474 47728;47883;48003;48120;48228;48347;48474;48602;48721;48850 118.07 72.369 1 37974000 67409 763 44766 45779 78824;78825;78826;78827;78828;78829;78830;78831;78832;78833 78830 0.07377987540144204 TYVENLRLL 9 Unmodified _TYVENLRLL_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MSMS AL20221201_MKP_PDAC_01 4 560.8236083984375 2 560.821681 1119.62881 NaN NaN NaN NaN NaN NaN NaN 72.555 1 66.379 65.879 66.879 -6.1757 0 0 0 0.02218 1 47468 47468 75.761 31.903 1 67410 763 44766 45779 78834 78834 0.07377987540144204 TYVESMMCFP 10 Unmodified _TYVESMMCFP_ 0 0 0 REV__ENST00000223321.8_1_7:42966189-42966243:-|nuORF REV__ENST00000223321.8_1_7:42966189-42966243:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2457275390625 2 604.245246 1206.47594 0.34385 0.00020777 -0.29998 -0.00018126 0.043869 2.6508E-05 604.2451242135804 97.414 0.24133 97.171 96.979 97.22 -0.24277 29 10 4 0 0 0 0.70895 1 53133 53133 1.6526 0 1 1961100 + 67411 24772 44767 45780 78835 78835 -0.11904035234647381 TYVEVWNDF 9 Unmodified _TYVEVWNDF_ 0 0 0 ENSG00000198858|ENST00000361574|R3HDM4 ENSG00000198858|ENST00000361574|R3HDM4 ENSG00000198858|ENST00000361574|R3HDM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7669677734375 2 586.766571 1171.51859 0.92148 0.0005407 0.25136 0.00014749 1.1728 0.00068818 586.7664861169364 88.71 0.29877 82.534 82.407 82.706 -6.1757 23 16 2 0 0 0 0.06187 1 58543 58543 42.095 18.946 1 7517000 67412 10176 44768 45781 78836 78836 -0.06030857518908306 TYVFATSVR 9 Unmodified _TYVFATSVR_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.2803955078125 2 522.279649 1042.54475 0.50683 0.00026471 -0.17287 -9.0286E-05 0.33396 0.00017442 522.2795209406589 52.259 0.5454 52.2 51.961 52.506 -0.058918 79 26 4 0 0 0 0.38785 1 28459 28459 13.042 4.2971 1 76772000 + 67413 17737 44769 45782 78837 78837 0.025174564432290936 TYVFATSVR 9 Unmodified _TYVFATSVR_ 0 0 0 REV__ENSG00000084674|ENST00000233242|APOB REV__ENSG00000084674|ENST00000233242|APOB MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.281494140625 2 522.279649 1042.54475 0.43658 0.00022802 0.95998 0.00050138 1.3966 0.0007294 522.2801787270307 57.904 0.59326 51.877 51.638 52.231 -6.0275 102 33 4 0 0 0 0.028475 3 36936 36936;37072;37200 56.177 7.4379 1 797230000 + 67414 17737 44769 45782 78838;78839;78840 78838 0.025174564432290936 TYVFIFHM 8 Unmodified _TYVFIFHM_ 0 0 0 ENST00000537553.5_1_12:30862838-30863444:-|nuORF;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF;ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2 ENST00000537553.5_1_12:30862838-30863444:-|nuORF ENST00000537553.5_1_12:30862838-30863444:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.2655639648438 2 529.262413 1056.51027 0.3885 0.00020562 4.4134 0.0023358 4.8018 0.0025414 529.2650790418555 77.242 0.17825 77.242 77.161 77.339 0 9 6 2 0 0 0 0.80624 1 42950 42950 2.8892 0.31174 1 454140 67415 2750 44770 45783 78841 78841 -0.01572082969209987 TYVFRYAAKF 10 Unmodified _TYVFRYAAKF_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5606994628906 3 422.560758 1264.66044 0.052021 2.1982E-05 1.1205 0.00047346 1.1725 0.00049545 422.56117429490143 51.728 0.25944 51.669 51.533 51.792 -0.058918 34 12 4 0 0 0 0.35903 1 27986 27986 26.021 18.544 1 4611900 67416 9407 44771 45784 78842 78842 0.038699802940755035 TYVFRYAAKF 10 Unmodified _TYVFRYAAKF_ 0 0 0 nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 nc|ENSG00000185745|P09914-2|IFIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.3379516601562 2 633.337498 1264.66044 0.060475 3.8301E-05 1.256 0.00079547 1.3165 0.00083377 633.3383659821503 51.701 0.17842 51.642 51.553 51.731 -0.058918 20 8 3 0 0 0 0.11654 1 28000 28000 43.982 31.45 1 2135800 67417 9407 44771 45784 78843 78843 0.038699802940755035 TYVGYGVLTLF 11 Unmodified _TYVGYGVLTLF_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2;ENST00000557566.1_1_14:78045296-78063654:-|nuORF ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.8330688476562 2 616.831714 1231.64888 0.68945 0.00042528 1.4617 0.00090165 2.1512 0.0013269 616.8324585654802 101.5 0.1209 95.321 95.252 95.373 -6.1757 15 5 4 0 0 0 0.0069872 1 68109 68109 71.922 42.841 1 30411000 67418 1848 44772 45785 78844 78844 0.04231738480098102 TYVHQVERDD 10 Unmodified _TYVHQVERDD_ 0 0 0 REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF REV__ENST00000544151.1_1_12:21807353-21810687:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.1993103027344 3 421.198436 1260.57348 0.27245 0.00011475 0.50236 0.00021159 0.77481 0.00032635 421.1988607994997 31.238 0.32507 31.136 30.984 31.309 -0.10269 39 12 4 0 0 0 0.6785 1 16191 16191 2.8433 0 1 16586000 + 67419 28638 44773 45786 78845 78845 -0.04638470718282406 TYVHSSATI 9 Unmodified _TYVHSSATI_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7478942871094 2 489.748182 977.481811 -0.44271 -0.00021682 0.88079 0.00043137 0.43808 0.00021455 489.7485911894391 26.752 0.2964 26.752 26.592 26.889 0 39 13 4 0 0 0 0.0041763 2 13727 13727;13823 120.45 69.595 1 19127000 67420 1569 44774 45787 78846;78847 78846 -0.007831093447975945 TYVHSSATI 9 Unmodified _TYVHSSATI_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7489318847656 2 489.748182 977.481811 0.9691 0.00047462 0.16372 8.0181E-05 1.1328 0.0005548 489.7481984560229 30.417 0.39511 26.92 26.718 27.113 -3.497 50 19 4 0 0 0 0.0067112 2 17214 17093;17214 112.59 61.738 1 76701000 67421 1569 44774 45787 78848;78849 78849 -0.007831093447975945 TYVIYAHL 8 Unmodified _TYVIYAHL_ 0 0 0 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2645568847656 2 490.26601 978.517468 NaN NaN NaN NaN NaN NaN NaN 31.463 1 31.361 30.861 31.861 -0.10269 0 0 0 0.97444 1 16358 16358 2.8892 0.31174 1 67422 7328 44775 45788 78850 78850 0.027349729028628644 TYVIYAHLL 9 Unmodified _TYVIYAHLL_ 0 0 0 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 ENSG00000165338|ENST00000298068|HECTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.8072509765625 2 546.808042 1091.60153 0.50787 0.00027771 0.097946 5.3558E-05 0.60582 0.00033127 546.8083471958605 72.726 0.21727 72.25 72.124 72.341 -0.47588 21 9 3 0 0 0 0.18465 1 39782 39782 24.674 10.768 1 981010 67423 7328 44776 45789 78851 78851 0.059395039997752974 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8098754882812 2 583.808239 1165.60193 0.13036 7.6105E-05 0.20982 0.0001225 0.34018 0.0001986 583.808156407838 58.736 0.50363 58.736 58.441 58.945 0 75 21 6 0 0 0 0.037253 2 32642 32642;32749 51.415 28.337 1 96273000 67424 8367 44777 45790 78852;78853 78852 0.025748789289536944 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8087158203125 2 583.808239 1165.60193 0.22263 0.00012997 0.62084 0.00036245 0.84347 0.00049242 583.8084602947127 59.228 0.49222 58.737 58.556 59.048 -0.49079 71 22 5 0 0 0 0.037253 2 32282 32177;32282 51.415 28.679 1 54879000 67425 8367 44777 45790 78854;78855 78855 0.025748789289536944 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.8092651367188 2 583.808239 1165.60193 0.88392 0.00051604 0.51152 0.00029863 1.3954 0.00081467 583.8082961220447 58.88 0.30256 58.819 58.661 58.964 -0.060719 36 14 3 0 0 0 0.029718 2 32046 32046;32150 55.503 36.246 1 5405600 67426 8367 44777 45790 78856;78857 78856 0.025748789289536944 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8087768554688 2 583.808239 1165.60193 0.87342 0.00050991 0.7394 0.00043167 1.6128 0.00094158 583.8081259277295 64.896 1.0055 58.72 58.298 59.304 -6.1757 108 56 3 0 0 0 0.044296 2 42169 42169;42300 47.594 28.337 1 194230000 67427 8367 44777 45790 78858;78859 78858 0.025748789289536944 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8089599609375 2 583.808239 1165.60193 0.68462 0.00039969 1.133 0.00066145 1.8176 0.0010611 583.8083977941205 67.341 1.2642 61.165 60.473 61.737 -6.1757 113 71 2 0 0 0 0.05483 1 44071 44071 43.772 24.515 1 72721000 67428 8367 44777 45790 78860 78860 0.025748789289536944 TYVKEIEVW 9 Unmodified _TYVKEIEVW_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.2863159179688 2 583.808239 1165.60193 0.55155 0.000322 0.24076 0.00014056 0.79231 0.00046255 583.8078016082239 65.841 0.51561 59.665 59.494 60.009 -6.1757 43 30 2 0 0 0 0.15363 1 42999 42999 29.841 13.993 1 13790000 67429 8367 44777 45790 78861 78861 0.025748789289536944 TYVKRCGNFQC 11 Unmodified _TYVKRCGNFQC_ 0 0 0 REV__nc|ENSG00000118263|O75840-2|KLF7 REV__nc|ENSG00000118263|O75840-2|KLF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2055969238281 3 440.20588 1317.59581 0.45636 0.00020089 -0.39911 -0.00017569 0.057246 2.52E-05 440.2054397450746 28.11 0.19893 28.139 28.037 28.236 0.029564 19 7 3 0 0 0 0.65108 1 14613 14613 4.4062 0.56024 1 3926600 + 67430 19141 44778 45791 78862 78862 -0.05028285845855862 TYVKRLHLL 9 Unmodified _TYVKRLHLL_ 0 0 0 nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 nc|ENSG00000127084|Q5JSP0-2|FGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5729064941406 3 381.572998 1141.69716 -0.20988 -8.0084E-05 0.52653 0.00020091 0.31666 0.00012083 381.5732463459073 36.205 0.25596 36.23 36.096 36.352 0.024971 25 10 3 0 0 0 0.062454 1 19161 19161 41.956 21.541 1 5814000 67431 3989 44779 45792 78863 78863 0.13198276910679851 TYVKRLVKI 9 Unmodified _TYVKRLVKI_ 0 0 0 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.9130554199219 3 373.913131 1118.71756 NaN NaN NaN NaN NaN NaN NaN 28.851 1 28.881 28.381 29.381 0.030106 0 0 0 0.15549 1 15033 15033 27.223 8.8501 1 67432 3493 44780 45793 78864 78864 0.16295447570473698 TYVKRLVKI 9 Unmodified _TYVKRLVKI_ 0 0 0 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 ENSG00000120063|ENST00000439174|GNA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.9139404296875 3 373.913131 1118.71756 1.1 0.00041131 -0.25791 -9.6437E-05 0.84209 0.00031487 373.9131432967767 32.836 0.30413 28.979 28.796 29.1 -3.8562 31 16 3 0 0 0 0.1773 1 18713 18713 29.841 15.435 1 20213000 67433 3493 44780 45793 78865 78865 0.16295447570473698 TYVKVSHIF 9 Unmodified _TYVKVSHIF_ 0 0 0 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 ENSG00000213988|ENST00000418063|ZNF90 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.307861328125 2 547.305667 1092.59678 NaN NaN NaN NaN NaN NaN NaN 72.224 1 72.263 71.763 72.763 0.039024 0 0 0 0.6557 1 39768 39768 10.824 1.4765 1 67434 10471 44781 45794 78866 78866 0.05418619857005069 TYVLRLEAI 9 Unmodified _TYVLRLEAI_ 0 0 0 ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216;nc|ENSG00000187049|Q9P0N5-2|TMEM216 ENSG00000187049|ENST00000515837|TMEM216 ENSG00000187049|ENST00000515837|TMEM216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3193359375 2 539.318774 1076.623 0.32876 0.0001773 2.5462 0.0013732 2.875 0.0015505 539.3203293596406 68.419 0.2262 67.938 67.804 68.031 -0.48071 20 9 3 0 0 0 0.044042 1 37395 37395 47.732 26.195 1 3230300 67435 9531 44782 45795 78867 78867 0.08774889028472899 TYVPNIDRI 9 Unmodified _TYVPNIDRI_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7963256835938 2 545.798206 1089.58186 -0.061737 -3.3696E-05 -1.9802 -0.0010808 -2.042 -0.0011145 545.7964616374292 51.919 0.32637 51.919 51.753 52.079 0 41 14 4 0 0 0 0.05483 2 28780 28658;28780 43.772 28.934 1 53264000 67436 16181 44783 45796 78868;78869 78869 0.04065127988974382 TYVPNIDRI 9 Unmodified _TYVPNIDRI_ 0 0 0 nc|ENSG00000129422|Q9ULD2-5|MTUS1;ENST00000523718.5_1_8:17581004-17613316:-|nuORF;nc|ENSG00000129422|Q9ULD2-2|MTUS1;ENSG00000129422|ENST00000693296|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 nc|ENSG00000129422|Q9ULD2-5|MTUS1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 545.798206 1089.58186 1.1452 0.00062502 -2.1123 -0.0011529 -0.96715 -0.00052787 545.7967982181973 58.409 0.57557 52.335 52.074 52.649 -6.0745 0.24005 -0.00022419 NaN 43.772 91 31 4 NaN NaN NaN NaN 0 NaN NaN 0 189460000 67437 16181 44783 45796 0.04065127988974382 TYVPWPLML 9 Oxidation (M) _TYVPWPLM(Oxidation (M))L_ TYVPWPLM(1)L TYVPWPLM(67)L 0 0 1 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2974853515625 2 568.296453 1134.57835 2.0837 0.0011842 0.23487 0.00013348 2.3186 0.0013176 568.2966127786466 100.17 0.16507 100.14 100.07 100.24 -0.036301 12 5 4 0 0 0 0.016184 1 55661 55661 67.344 33.241 1 11392000 67438 7802 44784 45797 78870 78870 1329 0.01644741890777368 TYVPWPLML 9 Oxidation (M) _TYVPWPLM(Oxidation (M))L_ TYVPWPLM(1)L TYVPWPLM(51)L 0 0 1 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2979736328125 2 568.296453 1134.57835 1.4158 0.00080462 1.059 0.00060181 2.4748 0.0014064 568.2972520021488 101.1 0.14289 94.928 94.831 94.974 -6.1757 20 7 4 0 0 0 0.038285 1 67774 67774 50.855 27.707 1 87348000 67439 7802 44784 45797 78871 78871 1329 0.01644741890777368 TYVPWPLML 9 Unmodified _TYVPWPLML_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.298828125 2 560.298996 1118.58344 0.90894 0.00050928 -0.34981 -0.000196 0.55913 0.00031328 560.2988714794466 101.92 0.15213 95.749 95.68 95.833 -6.1757 17 7 4 0 0 0 0.0086179 1 68419 68419 89.427 61.254 1 31406000 67440 7802 44784 45798 78872 78872 0.02889045753386199 TYVQSEHPIF 10 Unmodified _TYVQSEHPIF_ 0 0 0 REV__ENSG00000116266|ENST00000370008|STXBP3 REV__ENSG00000116266|ENST00000370008|STXBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7990112304688 2 610.800946 1219.58734 0.41939 0.00025616 -3.4913 -0.0021325 -3.0719 -0.0018763 610.7974903764855 63.227 0.38645 62.741 62.562 62.948 -0.48617 24 17 2 0 0 0 0.62068 1 34467 34467 10.074 0.6908 1 1735800 + 67441 19035 44785 45799 78873 78873 -0.013671932191982705 TYVRDIYPF 9 Unmodified _TYVRDIYPF_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5495910644531 3 391.86948 1172.58661 0.67724 0.00026539 -0.11091 -4.3464E-05 0.56633 0.00022193 391.86909486579543 40.612 0.20482 40.309 40.171 40.376 -0.30304 11 9 2 0 0 0 0.21021 1 21399 21399 7.609 0 1 1285500 67442 5606 44786 45800 78874 78874 0.007220121317232042 TYVRWYTQL 9 Unmodified _TYVRWYTQL_ 0 0 0 nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF nc|ENSG00000121940|Q96S66-2|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8211669921875 2 615.319306 1228.62406 0.53556 0.00032954 -0.7322 -0.00045054 -0.19664 -0.000121 615.3184979253361 61.942 0.32927 61.909 61.753 62.082 -0.032787 43 16 3 0 0 0 0.011291 1 33781 33781 76.825 46.188 1 12519000 67443 3611 44787 45801 78875 78875 0.018891033973659432 TYVRWYTQL 9 Unmodified _TYVRWYTQL_ 0 0 0 nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF nc|ENSG00000121940|Q96S66-2|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 MSMS AL20221201_MKP_PDAC_01 4 615.3189697265625 2 615.319306 1228.62406 NaN NaN NaN NaN NaN NaN NaN 72.635 1 66.459 65.959 66.959 -6.1757 0 0 0 0.001694 1 47515 47515 128.93 75.1 1 67444 3611 44787 45801 78876 78876 0.018891033973659432 TYVRWYTQL 9 Unmodified _TYVRWYTQL_ 0 0 0 nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;ENST00000482889.1_1_1:109472820-109486481:-|nuORF nc|ENSG00000121940|Q96S66-2|CLCC1 nc|ENSG00000121940|Q96S66-2|CLCC1 MSMS AL20221201_MKP_PDAC_01 4 615.3179931640625 2 615.319306 1228.62406 NaN NaN NaN NaN NaN NaN NaN 72.813 1 66.637 66.137 67.137 -6.1757 0 0 0 0.020292 1 47628 47628 78.06 48.22 1 67445 3611 44787 45801 78877 78877 0.018891033973659432 TYVSEDVSLL 10 Unmodified _TYVSEDVSLL_ 0 0 0 REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7886352539062 2 563.287337 1124.56012 0.92309 0.00051997 -2.1426 -0.0012069 -1.2195 -0.0006869 563.788147382966 45.87 0.52084 40.915 40.669 41.19 -4.9549 84 34 4 0 0 0 0.50944 1 28245 28245 15.847 0 1 29867000 + 67446 20131 44788 45802 78878 78878 0.0028227844977664063 TYVSFPLEL 9 Unmodified _TYVSFPLEL_ 0 0 0 nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF nc|ENSG00000124422|Q9UPT9-2|USP22 nc|ENSG00000124422|Q9UPT9-2|USP22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7843627929688 2 534.784233 1067.55391 0.31258 0.00016716 -0.069149 -3.698E-05 0.24343 0.00013018 534.7841171178162 97.228 0.48384 96.985 96.685 97.169 -0.24277 57 21 4 0 0 0 0.019303 1 53097 53097 64.236 41.088 1 5085300 67447 3784 44789 45803 78879 78879 0.02283805008892159 TYVSFPLEL 9 Unmodified _TYVSFPLEL_ 0 0 0 nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF nc|ENSG00000124422|Q9UPT9-2|USP22 nc|ENSG00000124422|Q9UPT9-2|USP22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7818603515625 2 534.784233 1067.55391 1.0667 0.00057043 0.19903 0.00010644 1.2657 0.00067687 534.7838098276918 100.42 0.15833 94.24 94.187 94.345 -6.1757 21 9 3 0 0 0 0.019303 1 67125 67125 64.236 35.749 1 175320000 67448 3784 44789 45803 78880 78880 0.02283805008892159 TYVSGMLRF 9 Oxidation (M) _TYVSGM(Oxidation (M))LRF_ TYVSGM(1)LRF TYVSGM(44)LRF 0 0 1 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2725830078125 2 545.273509 1088.53247 -0.35506 -0.0001936 -0.46847 -0.00025544 -0.82352 -0.00044904 545.2735805028555 51.524 0.29854 51.111 50.969 51.267 -0.41351 40 15 3 0 0 0 0.05483 1 27744 27744 43.772 21.036 1 24484000 67449 2809 44790 45804 78881 78881 489 -0.008259032914338604 TYVSGMLRF 9 Oxidation (M) _TYVSGM(Oxidation (M))LRF_ TYVSGM(1)LRF TYVSGM(63)LRF 0 0 1 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2738037109375 2 545.273509 1088.53247 0.024562 1.3393E-05 0.42867 0.00023374 0.45323 0.00024714 545.2737633022655 51.151 0.49839 51.097 50.862 51.361 -0.053871 56 24 3 0 0 0 0.020973 1 27622 27622 62.573 33.491 1 37367000 67450 2809 44790 45804 78882 78882 489 -0.008259032914338604 TYVSGMLRF 9 Oxidation (M) _TYVSGM(Oxidation (M))LRF_ TYVSGM(1)LRF TYVSGM(72)LRF 0 0 1 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7742309570312 2 545.273509 1088.53247 0.4306 0.0002348 -0.71533 -0.00039005 -0.28472 -0.00015525 545.272852113971 56.767 0.40591 50.79 50.615 51.021 -5.9769 57 23 3 0 0 0 0.013041 2 36190 36190;36328 71.922 39.617 1 82329000 67451 2809 44790 45804 78883;78884 78883 489 -0.008259032914338604 TYVSGMLRF 9 Unmodified _TYVSGMLRF_ 0 0 0 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2774658203125 2 537.276052 1072.53755 0.76052 0.00040861 0.33292 0.00017887 1.0934 0.00058748 537.2764801896941 64.544 0.27014 64.534 64.396 64.666 -0.010536 35 13 3 0 0 0 0.014417 1 35325 35325 69.105 34.703 1 6663300 67452 2809 44790 45805 78885 78885 0.004184005711749705 TYVSGMLRF 9 Unmodified _TYVSGMLRF_ 0 0 0 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MSMS AL20221201_MKP_PDAC_01 4 537.27734375 2 537.276052 1072.53755 NaN NaN NaN NaN NaN NaN NaN 69.638 1 63.463 62.963 63.963 -6.1757 0 0 0 0.059498 1 45485 45485 53.833 24.751 1 67453 2809 44790 45805 78886 78886 0.004184005711749705 TYVSGMLRF 9 Unmodified _TYVSGMLRF_ 0 0 0 nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1;ENST00000550385.1_1_12:102090725-102108674:+|nuORF nc|ENSG00000111666|Q8WUD6-2|CHPT1 nc|ENSG00000111666|Q8WUD6-2|CHPT1 MSMS AL20221201_MKP_PDAC_01 4 537.277099609375 2 537.276052 1072.53755 NaN NaN NaN NaN NaN NaN NaN 74.121 1 67.945 67.445 68.445 -6.1757 0 0 0 0.019743 1 48460 48460 78.728 40.552 1 67454 2809 44790 45805 78887 78887 0.004184005711749705 TYVSGTLRF 9 Unmodified _TYVSGTLRF_ 0 0 0 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.27978515625 2 522.279649 1042.54475 0.381 0.00019899 -0.16244 -8.484E-05 0.21856 0.00011415 522.2795486763961 52.564 0.53069 52.13 51.964 52.494 -0.43367 76 26 4 0 0 0 0.012668 2 28371 28371;28486 72.968 25.219 1 96894000 67455 4578 44791 45806 78888;78889 78888 0.02517456443251831 TYVSGTLRF 9 Unmodified _TYVSGTLRF_ 0 0 0 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 ENSG00000134255|ENST00000357172|CEPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.279541015625 2 522.279649 1042.54475 0.50683 0.00026471 -0.17287 -9.0286E-05 0.33396 0.00017442 522.2795209406589 52.259 0.5454 52.2 51.961 52.506 -0.058918 79 26 4 0 0 0 0.0094097 2 28240 28240;28341 82.529 34.781 1 76772000 67456 4578 44791 45806 78890;78891 78890 0.02517456443251831 TYVSSFYHAF 10 Unmodified _TYVSSFYHAF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7990112304688 2 611.282389 1220.55022 0.42734 0.00026123 -0.67548 -0.00041291 -0.24814 -0.00015168 611.7851645808715 63.259 0.12775 62.773 62.665 62.793 -0.48617 7 5 2 0 0 0 0.22811 1 34467 34467 14.838 2.5976 1 921400 67457 4211;16049 44792 45807 78892 78892 -0.0512286476493955 TYVSSFYHAF 10 Unmodified _TYVSSFYHAF_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000072110|P12814-4|ACTN1;nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;ENST00000554508.5_1_14:69367621-69387744:-|nuORF ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000072110|P12814-4|ACTN1 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 611.282389 1220.55022 0.52628 0.00032171 0.98827 0.00060411 1.5145 0.00092582 611.283349313099 62.851 0.13612 62.829 62.752 62.888 -0.021614 0.027816 0.00050219 NaN 14.838 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1687100 67458 4211;16049 44792 45807 -0.0512286476493955 TYVSTWDP 8 Unmodified _TYVSTWDP_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7220764160156 2 484.721633 967.428712 0.65461 0.0003173 0.55252 0.00026782 1.2071 0.00058512 484.7216811906833 71.784 0.26751 71.308 71.147 71.415 -0.47609 16 10 2 0 0 0 0.46494 1 39304 39304 38.151 6.0342 1 658000 67459 9123 44793 45808 78893 78893 -0.05630487127473316 TYVTESTSLM 10 Unmodified _TYVTESTSLM_ 0 0 0 REV__ENSG00000196184|ENST00000423932|OR10J1 REV__ENSG00000196184|ENST00000423932|OR10J1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8462219238281 3 377.846123 1130.51654 0.6364 0.00024046 -0.74565 -0.00028174 -0.10926 -4.1282E-05 377.8458472673795 30.26 0.17313 30.18 30.082 30.255 -0.080429 11 6 2 0 0 0 0.62068 1 15700 15700 8.9762 1.3673 1 1495500 + 67460 23801 44794 45809 78894 78894 -0.04349654319025831 TYVTEVREL 9 Unmodified _TYVTEVREL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2958374023438 2 555.295496 1108.57644 -0.046815 -2.5996E-05 -0.59747 -0.00033177 -0.64429 -0.00035777 555.2958483518214 44.853 0.35846 44.853 44.677 45.036 0 48 18 4 0 0 0 0.01958 2 24361 24361;24465 63.961 20.188 1 64448000 67461 3967 44795 45810 78895;78896 78895 0.026494044065202615 TYVTEVREL 9 Unmodified _TYVTEVREL_ 0 0 0 nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 nc|ENSG00000126777|Q86UP2-2|KTN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7755126953125 2 555.295496 1108.57644 1.1372 0.00063146 0.67154 0.0003729 1.8087 0.0010044 555.29563895114 50.521 0.40514 44.982 44.808 45.213 -5.5391 35 25 2 0 0 0 0.19994 1 31650 31650 12.241 4.3305 1 51914000 67462 3967 44795 45810 78897 78897 0.026494044065202615 TYVTILPEL 9 Unmodified _TYVTILPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.80029296875 2 524.799883 1047.58521 0.47474 0.00024914 0.12639 6.6331E-05 0.60113 0.00031547 524.7999309196911 92.026 0.44572 92.026 91.787 92.233 0 93 29 4 0 0 0 0.0088975 3 50876 50781;50876;50974 104.8 56.453 1 13867000 67463 3021 44796 45811 78898;78899;78900 78899 0.06332378042998243 TYVTILPEL 9 Unmodified _TYVTILPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7996215820312 2 524.799883 1047.58521 0.31699 0.00016636 -0.024427 -1.282E-05 0.29257 0.00015354 524.7998148496335 92.505 0.54225 92.024 91.745 92.287 -0.48092 90 24 5 0 0 0 0.0082281 3 50570 50469;50570;50669 92.822 44.476 1 63130000 67464 3021 44796 45811 78901;78902;78903 78902 0.06332378042998243 TYVTILPEL 9 Unmodified _TYVTILPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7998657226562 2 524.799883 1047.58521 1.2128 0.00063648 -0.34627 -0.00018172 0.86654 0.00045476 524.7995756549767 91.945 0.38451 91.975 91.8 92.184 0.030197 23 13 2 0 0 0 0.0088975 1 51100 51100 104.8 56.453 1 6552800 67465 3021 44796 45811 78904 78904 0.06332378042998243 TYVTILPEL 9 Unmodified _TYVTILPEL_ 0 0 0 ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;ENST00000472697.5_1_3:142095319-142144369:-|nuORF ENSG00000114127|ENST00000392981|XRN1 ENSG00000114127|ENST00000392981|XRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.800537109375 2 524.799883 1047.58521 0.34255 0.00017977 1.1424 0.00059951 1.4849 0.00077928 524.8004455448142 99.796 0.36475 93.621 93.49 93.855 -6.1757 75 25 4 0 0 0 0.0082281 1 66504 66504 92.822 41.967 1 1305000000 67466 3021 44796 45811 78905 78905 0.06332378042998243 TYVTTHPWL 9 Unmodified _TYVTTHPWL_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2868041992188 2 559.287474 1116.5604 NaN NaN NaN NaN NaN NaN NaN 56.496 1 56.428 55.928 56.928 -0.068737 0 0 0 0.15618 1 30734 30734 36.044 24.404 1 67467 829 44797 45812 78906 78906 0.0067774296028346726 TYVTTHPWL 9 Unmodified _TYVTTHPWL_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2882690429688 2 559.287474 1116.5604 0.52472 0.00029347 0.98111 0.00054872 1.5058 0.00084219 559.2880967895107 62.076 0.33214 55.901 55.723 56.055 -6.1757 30 18 2 0 0 0 0.023164 1 40007 40007 60.39 37.241 1 25723000 67468 829 44797 45812 78907 78907 0.0067774296028346726 TYVVMAIITL 10 Unmodified _TYVVMAIITL_ 0 0 0 REV__ENSG00000196542|ENST00000620149|SPTSSB REV__ENSG00000196542|ENST00000620149|SPTSSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.718994140625 2 562.325211 1122.63587 NaN NaN NaN NaN NaN NaN NaN 77.798 1 77.316 76.816 77.816 -0.4826 0 0 0 0.61917 1 42593 42593 20.454 0 1 + 67469 23841 44798 45813 78908 78908 0.07945584096341918 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2764282226562 2 575.276772 1148.53899 0.31507 0.00018125 -0.13032 -7.4969E-05 0.18475 0.00010628 575.2766032059687 72.125 0.65556 72.125 71.883 72.539 0 107 28 5 0 0 0 0.2001 1 40179 40179 23.148 0.41214 1 122480000 67470 3602;13761 44799 45814 78909 78909 -0.02933686859091722 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2771606445312 2 575.276772 1148.53899 0.76354 0.00043925 -0.46194 -0.00026574 0.3016 0.00017351 575.2763836148133 72.603 0.66266 72.127 71.9 72.563 -0.4761 105 30 5 0 0 0 0.07916 2 39797 39797;39900 37.974 13.953 1 137160000 67471 3602;13761 44799 45814 78910;78911 78910 -0.02933686859091722 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.277099609375 2 575.276772 1148.53899 0.47173 0.00027138 -0.56448 -0.00032474 -0.09275 -5.3357E-05 575.2762004091242 72.1 0.42004 72.139 71.893 72.313 0.039024 53 20 3 0 0 0 0.087258 2 39725 39623;39725 36.044 16.605 1 15268000 67472 3602;13761 44799 45814 78912;78913 78913 -0.02933686859091722 TYVYFTNEL 9 Unmodified _TYVYFTNEL_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.276611328125 2 575.276772 1148.53899 0.99436 0.00057203 -0.38518 -0.00022158 0.60919 0.00035045 575.2764542728308 80.141 0.81913 73.965 73.55 74.369 -6.1757 191 48 5 0 0 0 0.087258 4 52333 52333;52462;52590;52721 36.044 9.7761 1 1142000000 67473 3602;13761 44799 45814 78914;78915;78916;78917 78914 -0.02933686859091722 TYWCEYRGQP 10 Unmodified _TYWCEYRGQP_ 0 0 0 ENSG00000137441|ENST00000259989|FGFBP2 ENSG00000137441|ENST00000259989|FGFBP2 ENSG00000137441|ENST00000259989|FGFBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.7839965820312 2 651.78223 1301.54991 -0.00298 -1.9423E-06 1.1483 0.00074844 1.1453 0.0007465 651.7833618271657 56.252 0.25029 56.184 56.036 56.287 -0.068737 27 12 3 0 0 0 0.56348 1 30556 30556 13.042 0 1 7523300 67474 4930 44800 45815 78918 78918 -0.08880607756464087 TYWFAAPISTF 11 Unmodified _TYWFAAPISTF_ 0 0 0 REV__ENSG00000184408|ENST00000331113|KCND2 REV__ENSG00000184408|ENST00000331113|KCND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.3214721679688 2 652.321514 1302.62847 0.3345 0.0002182 1.9084 0.0012449 2.2429 0.0014631 652.3227932502557 53.21 0.36881 52.759 52.574 52.943 -0.45173 35 18 2 0 0 0 0.37677 1 28849 28849 22.736 4.5899 1 2393800 + 67475 23418 44801 45816 78919 78919 -0.010734321797372104 TYWRELSC 8 Unmodified _TYWRELSC_ 0 0 0 ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A ENSG00000166963|ENST00000300231|MAP1A ENSG00000166963|ENST00000300231|MAP1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2445068359375 2 529.242209 1056.46987 1.0994 0.00058184 0.7027 0.0003719 1.8021 0.00095373 529.2430451698328 87.041 0.43057 80.865 80.661 81.092 -6.1757 56 23 4 0 0 0 0.72953 1 57328 57328 14.582 3.7578 1 28003000 67476 7558 44802 45817 78920 78920 -0.05611049359640674 TYYCQQANSF 10 Unmodified _TYYCQQANSF_ 0 0 0 nc|ENSG00000278857|P01611|IGKV1D-12;nc|ENSG00000243290|A0A0C4DH73|IGKV1-12 nc|ENSG00000278857|P01611|IGKV1D-12 nc|ENSG00000278857|P01611|IGKV1D-12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.7525024414062 2 612.753138 1223.49172 0.3575 0.00021906 -0.10483 -6.4236E-05 0.25267 0.00015483 612.7534044240323 75.149 0.19576 75.149 75.079 75.275 0 18 13 2 0 0 0 0.69064 1 41822 41822 3.9444 0.66309 1 428130 67477 16573 44803 45818 78921 78921 -0.11108289401772709 TYYDQWSGF 9 Unmodified _TYYDQWSGF_ 0 0 0 REV__ENST00000571782.1_1_17:4647099-4647876:+|nuORF REV__ENST00000571782.1_1_17:4647099-4647876:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7457885742188 2 583.743096 1165.47164 0.11758 6.8638E-05 2.9467 0.0017201 3.0643 0.0017887 583.744283099345 64.202 0.27914 64.202 64.022 64.301 0 18 11 2 0 0 0 0.48152 2 35706 35706;35753 8.5933 3.8373 1 1512100 + 67478 20539 44804 45819 78922;78923 78922 -0.10447717070042017 TYYDYWRARPF 11 Unmodified _TYYDYWRARPF_ 0 0 0 REV__nc|ENSG00000257335|O43451-1|MGAM REV__nc|ENSG00000257335|O43451-1|MGAM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 769.3661499023438 2 769.364776 1536.715 NaN NaN NaN NaN NaN NaN NaN 67.425 1 67.425 66.925 67.925 0 0 0 0 0.9428 1 37598 37598 0.35063 0 1 + 67479 24564 44805 45820 78924 78924 -0.03189052625180011 TYYEEERDPF 10 Unmodified _TYYEEERDPF_ 0 0 0 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 REV__nc|ENSG00000113621|Q96J42-2|TXNDC15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.7883911132812 2 674.788232 1347.56191 -0.023275 -1.5706E-05 -0.051255 -3.4586E-05 -0.07453 -5.0292E-05 674.7879554150472 79.575 0.3146 79.575 79.394 79.709 0 19 12 2 0 0 0 0.70951 1 44176 44176 1.8442 0 1 325560 + 67480 18881 44806 45821 78925 78925 -0.09796712532283891 TYYGVKTLII 10 Unmodified _TYYGVKTLII_ 0 0 0 REV__nc|ENSG00000110713|P52948-4|NUP98 REV__nc|ENSG00000110713|P52948-4|NUP98 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.5353698730469 3 390.897147 1169.66961 1.453 0.00056799 -0.91884 -0.00035917 0.53419 0.00020881 390.8973927624049 20.673 0.28385 17.98 17.781 18.065 -2.693 27 17 2 0 0 0 0.23871 1 10954 10954 5.0475 2.9615 1 1490400 + 67481 18717 44807 45822 78926 78926 0.09156328859762652 TYYKSEKL 8 Unmodified _TYYKSEKL_ 0 0 0 REV__nc|ENSG00000167165|P19224-3|UGT1A6 REV__nc|ENSG00000167165|P19224-3|UGT1A6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.1981201171875 2 516.274032 1030.53351 0.25455 0.00013142 -0.022646 -1.1692E-05 0.2319 0.00011973 516.273982725316 69.708 0.28198 69.708 69.557 69.839 0 20 13 2 0 0 0 8.7369 1 38883 38883 2.5775 0 1 890500 + 67482 22187 44808 45823 78927 78927 0.01946634349087617 TYYKTWYI 8 Unmodified _TYYKTWYI_ 0 0 0 REV__ENSG00000135114|ENST00000257570|OASL REV__ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2838134765625 2 569.2844 1136.55425 1.0678 0.00060788 -1.2294 -0.00069986 -0.16158 -9.1987E-05 569.2841058685775 54.479 0.28825 54.479 54.309 54.597 0 28 12 3 0 0 0 0.61462 1 30225 30225 24.674 5.4169 1 3360100 + 67483 20039 44809 45824 78928 78928 -0.008567752712451693 TYYLQTYGSAT 11 Unmodified _TYYLQTYGSAT_ 0 0 0 ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4;nc|ENSG00000244694|Q6ZW05-2|PTCHD4 ENSG00000244694|ENST00000339488|PTCHD4 ENSG00000244694|ENST00000339488|PTCHD4 MSMS AL20221201_MKP_PDAC_01 4 423.2010498046875 3 423.199554 1266.57683 NaN NaN NaN NaN NaN NaN NaN 80.124 1 73.949 73.449 74.449 -6.1757 0 0 0 0.93933 1 52552 52552 1.2148 0 1 67484 10733 44810 45825 78929 78929 -0.045792206642772726 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.303466796875 2 567.303124 1132.5917 0.46306 0.00026269 -0.059559 -3.3788E-05 0.4035 0.00022891 567.3030202426111 69.793 0.38577 69.824 69.611 69.997 0.030914 50 19 3 0 0 0 0.0085366 1 38343 38343 90.135 50.178 1 38700000 67485 5205 44811 45826 78930 78930 0.030703159943641367 TYYRGFLTL 9 Unmodified _TYYRGFLTL_ 0 0 0 ENST00000554761.5_1_14:90397883-90418750:-|nuORF;ENST00000553871.5_1_14:90263589-90418750:-|nuORF;nc|ENSG00000140025|Q9BUY7-6|EFCAB11;nc|ENSG00000140025|Q9BUY7-3|EFCAB11;ENST00000556639.5_1_14:90302986-90416480:-|nuORF;nc|ENSG00000140025|Q9BUY7-2|EFCAB11;nc|ENSG00000140025|Q9BUY7-5|EFCAB11;ENSG00000140025|ENST00000316738|EFCAB11 ENST00000554761.5_1_14:90397883-90418750:-|nuORF ENST00000554761.5_1_14:90397883-90418750:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 567.303124 1132.5917 0.31058 0.00017619 2.0174 0.0011445 2.328 0.0013207 567.3045531958385 70.35 0.13453 69.871 69.758 69.892 -0.47903 0.023815 0.0021891 NaN 90.135 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 615250 67486 5205 44811 45826 0.030703159943641367 TYYRYQSLF 9 Unmodified _TYYRYQSLF_ 0 0 0 REV__ENST00000553626.5_1_14:88852162-88894100:+|nuORF REV__ENST00000553626.5_1_14:88852162-88894100:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.80322265625 2 620.803488 1239.59242 NaN NaN NaN NaN NaN NaN NaN 72.662 1 72.186 71.686 72.686 -0.47588 0 0 0 0.81961 1 39765 39765 8.5933 3.3626 1 + 67487 17204 44812 45827 78931 78931 -0.017788893565693797 VAAALRYL 8 Unmodified _VAAALRYL_ 0 0 0 ENSG00000135063|ENST00000303068|ENTREP1;nc|ENSG00000135063|Q15884|ENTREP1;ENST00000460871.1_1_9:71990729-72006671:+|nuORF ENSG00000135063|ENST00000303068|ENTREP1 ENSG00000135063|ENST00000303068|ENTREP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 876.5274658203125 1 876.530164 875.522887 -0.35614 -0.00031217 -1.0929 -0.000958 -1.4491 -0.0012702 876.5283748742987 104.51 0.032143 104.46 104.44 104.47 -0.048737 4 2 2 0 0 0 0.80624 1 58030 58030 2.8892 0 1 4641200 67488 4665 44813 45828 78932 78932 0.08014696485315653 VAAAVLVPPS 10 Unmodified _VAAAVLVPPS_ 0 0 0 ENST00000491941.5_1_1:2523250-2524264:-|nuORF;ENST00000464195.1_1_1:2523250-2524264:-|nuORF ENST00000491941.5_1_1:2523250-2524264:-|nuORF ENST00000491941.5_1_1:2523250-2524264:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 462.2823791503906 2 462.28166 922.548768 NaN NaN NaN NaN NaN NaN NaN 80.718 1 74.542 74.042 75.042 -6.1757 0 0 0 0.31792 1 52960 52960 36.044 0 1 67489 13712 44814 45829 78933 78933 0.08439545936948889 VAAAVQAYNI 10 Unmodified _VAAAVQAYNI_ 0 0 0 REV__ENST00000464195.1_1_1:2523250-2524264:-|nuORF REV__ENST00000464195.1_1_1:2523250-2524264:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7820434570312 2 510.279649 1018.54475 0.12797 6.5299E-05 -0.0087506 -4.4653E-06 0.11922 6.0834E-05 510.2796431162041 56.191 0.91393 50.214 49.805 50.719 -5.9769 179 53 5 0 0 0 0.2829 1 36124 36124 28.487 1.6032 1 788500000 + 67490 27369 44815 45830 78934 78934 0.03621456443238458 VAADVKEYERE 11 Unmodified _VAADVKEYERE_ 0 0 0 ENSG00000112739|ENST00000337659|PRPF4B;ENST00000490399.5_1_6:4041126-4044298:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF ENSG00000112739|ENST00000337659|PRPF4B ENSG00000112739|ENST00000337659|PRPF4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.324951171875 2 654.825149 1307.63574 -1.0438 -0.00068349 -0.33652 -0.00022036 -1.3803 -0.00090385 654.8252748824564 32.824 0.23401 32.824 32.714 32.948 0 23 11 3 0 0 0 0.30985 1 17165 17165 26.268 0 1 4997500 67491 2915 44816 45831 78935 78935 -0.0057674436993693234 VAAESVGKEL 10 Unmodified _VAAESVGKEL_ 0 0 0 REV__nc|ENSG00000156304|O95104-2|SCAF4 REV__nc|ENSG00000156304|O95104-2|SCAF4 MSMS AL20221201_MKP_PDAC_01 4 501.7764892578125 2 501.776939 1001.53933 NaN NaN NaN NaN NaN NaN NaN 58.247 1 52.219 51.719 52.719 -6.0275 0 0 0 0.64375 1 37313 37313 19.257 2.3147 1 + 67492 21327 44817 45832 78936 78936 0.038617328607642776 VAAEVQEEL 9 Unmodified _VAAEVQEEL_ 0 0 0 ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B ENSG00000266714|ENST00000645453|MYO15B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7507934570312 2 494.253297 986.492041 -0.073943 -3.6547E-05 -2.4966 -0.0012339 -2.5705 -0.0012705 494.25208004716404 34.555 0.21349 34.364 34.226 34.44 -0.19131 12 9 2 0 0 0 0.18882 1 18061 18061 15.847 1.2655 1 2605600 67493 10865 44818 45833 78937 78937 -0.0017454641023277873 VAAFAPASSI 10 Unmodified _VAAFAPASSI_ 0 0 0 REV__nc|ENSG00000205726|Q15811-12|ITSN1 REV__nc|ENSG00000205726|Q15811-12|ITSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2562255859375 2 467.255643 932.496732 1.1318 0.00052885 0.8368 0.000391 1.9686 0.00091985 467.25615917045053 88.31 0.58913 82.134 81.923 82.512 -6.1757 60 32 2 0 0 0 0.37389 1 58292 58292 23.148 3.7094 1 18102000 + + 67494 29916 44819 45834 78938 78938 0.027783825231722403 VAAFHLLF 8 Unmodified _VAAFHLLF_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 459.2425231933594 2 459.265813 916.517074 1.2551 0.00057641 1.1013 0.0005058 2.3564 0.0010822 459.266627647515 37.648 0.42107 33.279 33.034 33.456 -4.3689 40 24 2 0 0 0 8.7369 1 22124 22124 11.114 0 1 17668000 67495 713 44820 45835 78939 78939 0.05547597973657048 VAAGGHITF 9 Unmodified _VAAGGHITF_ 0 0 0 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 ENSG00000244462|ENST00000374114|RBM12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7357788085938 2 436.734877 871.455202 0.77033 0.00033643 1.5812 0.00069055 2.3515 0.001027 436.73536788740876 43.749 0.51167 38.984 38.709 39.22 -4.7648 72 31 3 0 0 0 0.14602 1 26611 26611 28.487 3.813 1 18109000 67496 10730 44821 45836 78940 78940 0.01433246554518064 VAAGLYYL 8 Unmodified _VAAGLYYL_ 0 0 0 ENSG00000144043|ENST00000272438|TEX261;ENST00000489894.5_1_2:71216836-71221917:-|nuORF ENSG00000144043|ENST00000272438|TEX261 ENSG00000144043|ENST00000272438|TEX261 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.7485656738281 2 435.242004 868.469455 0.34903 0.00015191 -4.1089 -0.0017884 -3.7598 -0.0016364 435.2399101103644 50.15 0.20012 50.15 50.009 50.209 0 12 9 2 0 0 0 8.7369 1 27652 27652 11.114 1.767 1 912910 67497 5580 44822 45837 78941 78941 0.029958989827946425 VAAKDPPAA 9 Unmodified _VAAKDPPAA_ 0 0 0 REV__ENSG00000142700|ENST00000404795|DMRTA2 REV__ENSG00000142700|ENST00000404795|DMRTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.463134765625 1 839.462144 838.454868 0.24925 0.00020923 -0.86092 -0.00072271 -0.61168 -0.00051348 839.461641709411 53.292 0.21357 53.292 53.166 53.38 0 11 8 2 0 0 0 0.12841 1 29531 29531 30.225 1.738 1 1616700 + 67498 20590 44823 45838 78942 78942 0.029178268346527148 VAAKITATI 9 Unmodified _VAAKITATI_ 0 0 0 ENSG00000012983|ENST00000682126|MAP4K5 ENSG00000012983|ENST00000682126|MAP4K5 ENSG00000012983|ENST00000682126|MAP4K5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2808227539062 2 444.28166 886.548768 0.65504 0.00029102 -0.15502 -6.8873E-05 0.50002 0.00022215 444.28153743732946 44.152 0.36987 39.3 39.117 39.486 -4.852 39 26 2 0 0 0 0.029718 1 26895 26895 55.503 5.5697 1 14286000 67499 467 44824 45839 78943 78943 0.10095545936940198 VAAKKSPV 8 Unmodified _VAAKKSPV_ 0 0 0 nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM nc|ENSG00000104722|P07197-2|NEFM nc|ENSG00000104722|P07197-2|NEFM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2554626464844 2 400.255446 798.496338 0.13184 5.2769E-05 -0.13893 -5.5607E-05 -0.00709 -2.8378E-06 400.25522472409256 78.251 0.4045 78.303 78.037 78.442 0.052452 21 16 2 0 0 0 0.71527 1 43221 43221 15.847 0 1 1871000 67500 2226 44825 45840 78944 78944 0.08903007593994516 VAAKSSGYSAL 11 Unmodified _VAAKSSGYSAL_ 0 0 0 REV__ENSG00000086696|ENST00000199936|HSD17B2 REV__ENSG00000086696|ENST00000199936|HSD17B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2819213867188 2 527.282389 1052.55022 -0.33626 -0.0001773 -0.11472 -6.049E-05 -0.45098 -0.00023779 527.2820718252957 30.089 0.29202 30.089 29.909 30.201 0 24 13 2 0 0 0 0.16515 1 15598 15598 34.932 4.2955 1 5220800 + 67501 17770 44826 45841 78945 78945 0.026051352350577872 VAAKTKLF 8 Unmodified _VAAKTKLF_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2791137695312 2 439.278921 876.543289 1.2184 0.00053523 -0.26172 -0.00011497 0.9567 0.00042026 439.2788782557426 50.114 0.33366 44.574 44.377 44.71 -5.5391 33 21 2 0 0 0 0.30525 1 31310 31310 54.774 10.915 1 19841000 + 67502 17400 44827 45842 78946 78946 0.10007867145134242 VAALALALA 9 Unmodified _VAALALALA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7642211914062 2 406.765646 811.516739 NaN NaN NaN NaN NaN NaN NaN 87.561 1 87.561 87.061 88.061 0 0 0 0 0.8622 1 48483 48483 0 0 1 + 67503 21806 44828 45843 78947 78947 0.10344178253774317 VAALALALA 9 Unmodified _VAALALALA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7645874023438 2 406.765646 811.516739 NaN NaN NaN NaN NaN NaN NaN 87.79 1 87.79 87.29 88.29 0 0 0 0 0.8622 1 48605 48605 0 0 1 + 67504 21806 44828 45843 78948 78948 0.10344178253774317 VAALALALA 9 Unmodified _VAALALALA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.7644958496094 2 406.765646 811.516739 NaN NaN NaN NaN NaN NaN NaN 88.538 1 88.538 88.038 89.038 0 0 0 0 0.8622 1 49004 49004 0 0 1 + 67505 21806 44828 45843 78949 78949 0.10344178253774317 VAALALALA 9 Unmodified _VAALALALA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7647399902344 2 406.765646 811.516739 0.4836 0.00019671 -1.8489 -0.00075206 -1.3653 -0.00055535 406.7644339823425 88.241 0.32963 87.737 87.46 87.79 -0.50423 17 13 2 0 0 0 0.62242 1 48262 48262 0 0 1 249660 + 67506 21806 44828 45843 78950 78950 0.10344178253774317 VAALALALA 9 Unmodified _VAALALALA_ 0 0 0 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2479858398438 2 406.765646 811.516739 0.4836 0.00019671 -1.8489 -0.00075206 -1.3653 -0.00055535 406.7644339823425 88.241 0.32963 87.737 87.46 87.79 -0.50423 17 13 2 0 0 0 0.2191 1 48221 48221 0 0 1 249660 + 67507 21806 44828 45843 78951 78951 0.10344178253774317 VAALPSFSTL 10 Unmodified _VAALPSFSTL_ 0 0 0 ENST00000531095.1_1_22:36550577-36556809:-|nuORF ENST00000531095.1_1_22:36550577-36556809:-|nuORF ENST00000531095.1_1_22:36550577-36556809:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2659912109375 2 503.2844 1004.55425 0.48319 0.00024318 0.63126 0.0003177 1.1144 0.00056088 503.2846608850907 63.593 0.28473 63.593 63.472 63.756 0 28 12 3 0 0 0 0.6606 1 35413 35413 7.2892 0 1 2754000 67508 14901 44829 45844 78952 78952 0.052152247287722275 VAALSSVGTL 10 Unmodified _VAALSSVGTL_ 0 0 0 nc|ENSG00000131584|Q96P50-1|ACAP3;ACAP3|p.L773Gfs*13|1|0.15|ENSG00000131584|chr1:1293866-1293867|-/CGGGTCC|frameshift_variant;ENSG00000131584|ENST00000354700|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF;nc|ENSG00000131584|Q96P50-4|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 nc|ENSG00000131584|Q96P50-1|ACAP3 MSMS AL20221201_MKP_PDAC_01 4 459.2694702148438 2 459.26875 916.522947 NaN NaN NaN NaN NaN NaN NaN 46.134 1 41.179 40.679 41.679 -4.9549 0 0 0 0.54588 1 28445 28445 24.021 0 1 67509 7 44830 45845 78953 78953 0.06134651694674176 VAANPSSPEPA 11 Unmodified _VAANPSSPEPA_ 0 0 0 REV__ENSG00000171222|ENST00000305978|SCAND1 REV__ENSG00000171222|ENST00000305978|SCAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2548828125 2 520.256371 1038.49819 -0.10819 -5.6285E-05 -1.3892 -0.00072274 -1.4974 -0.00077902 520.2552047563344 40.836 0.43543 40.836 40.701 41.137 0 67 40 2 0 0 0 0.073964 1 22119 22119 45.7 1.9272 1 25734000 + 67510 22545 44831 45846 78954 78954 -0.019520281786981286 VAANSFFQIYC 11 Unmodified _VAANSFFQIYC_ 0 0 0 REV__ENSG00000181072|ENST00000680005|CHRM2 REV__ENSG00000181072|ENST00000680005|CHRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.79638671875 2 631.797349 1261.58014 -0.38352 -0.00024231 0.002205 1.3931E-06 -0.38132 -0.00024092 631.7973069221738 33.424 0.7057 33.424 33.285 33.991 0 98 49 3 0 0 0 0.65846 1 17601 17601 8.1555 0.54658 1 55655000 + 67511 23187 44832 45847 78955 78955 -0.04018249091268444 VAANSFFQIYC 11 Unmodified _VAANSFFQIYC_ 0 0 0 REV__ENSG00000181072|ENST00000680005|CHRM2 REV__ENSG00000181072|ENST00000680005|CHRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7992553710938 2 631.797349 1261.58014 -0.54562 -0.00034472 2.0913 0.0013213 1.5456 0.00097653 631.7986489353707 33.646 0.25216 33.487 33.369 33.622 -0.15918 20 10 3 0 0 0 0.58219 1 17553 17553 12.241 6.5088 1 1686000 + 67512 23187 44832 45847 78956 78956 -0.04018249091268444 VAANSFFQIYC 11 Unmodified _VAANSFFQIYC_ 0 0 0 REV__ENSG00000181072|ENST00000680005|CHRM2 REV__ENSG00000181072|ENST00000680005|CHRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7984008789062 2 631.797349 1261.58014 0.49398 0.00031209 0.93461 0.00059049 1.4286 0.00090258 631.7980651982989 38.332 0.44719 33.963 33.733 34.18 -4.3689 81 27 4 0 0 0 0.65846 1 22642 22642 8.1555 0 1 71733000 + 67513 23187 44832 45847 78957 78957 -0.04018249091268444 VAANVSGAPSL 11 Unmodified _VAANVSGAPSL_ 0 0 0 REV__ENST00000373517.3_1_X:72434272-72434665:-|nuORF REV__ENST00000373517.3_1_X:72434272-72434665:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7796020507812 2 493.269281 984.52401 0.58475 0.00028844 4.1926 0.0020681 4.7773 0.0023565 493.26926723136717 45.958 0.16783 45.958 45.9 46.068 0 10 7 2 0 0 0 0.26754 1 25138 25138 18.146 2.2992 1 2297300 + 67514 26149 44833 45848 78958 78958 0.031128660635772576 VAAPADPEM 9 Oxidation (M) _VAAPADPEM(Oxidation (M))_ VAAPADPEM(1) VAAPADPEM(74) 0 0 1 ENSG00000030110|ENST00000374467|BAK1;nc|ENSG00000030110|Q16611-2|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MSMS AL20221201_MKP_PDAC_01 4 458.7093811035156 2 458.707668 915.400783 NaN NaN NaN NaN NaN NaN NaN 27.705 1 24.668 24.168 25.168 -3.0365 0 0 0 0.023279 1 15374 15374 74.423 34.465 1 67515 584 44834 45849 78959 78959 85 -0.06030133379204017 VAAPAEQIS 9 Unmodified _VAAPAEQIS_ 0 0 0 REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2380065917969 2 443.23745 884.460347 0.82888 0.00036739 -0.09096 -4.0317E-05 0.73792 0.00032707 443.23743510044284 49.116 0.3852 43.72 43.588 43.973 -5.3961 44 25 2 0 0 0 0.042911 1 30757 30757 48.346 0 1 65014000 + 67516 28401 44835 45850 78960 78960 0.013495056264787308 VAAPEHISY 9 Unmodified _VAAPEHISY_ 0 0 0 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1;ENSG00000267368|ENST00000340457|UPK3BL1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7510070800781 2 493.750724 985.486896 -0.5484 -0.00027077 -0.94887 -0.0004685 -1.4973 -0.00073928 493.7506971371856 34.375 0.62061 34.375 34.207 34.827 0 105 31 5 0 0 0 0.019303 2 18060 18060;18176 64.236 34.012 1 235380000 67517 122 44836 45851 78961;78962 78961 -0.00642805482186759 VAAPEHISY 9 Unmodified _VAAPEHISY_ 0 0 0 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1;ENSG00000267368|ENST00000340457|UPK3BL1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7503356933594 2 493.750724 985.486896 0.36416 0.0001798 -0.18723 -9.2445E-05 0.17693 8.7357E-05 493.7506512641357 34.301 0.19188 34.328 34.224 34.416 0.027401 13 8 2 0 0 0 0.095405 1 18079 18079 34.102 17.16 1 1656500 67518 122 44836 45851 78963 78963 -0.00642805482186759 VAAPEHISY 9 Unmodified _VAAPEHISY_ 0 0 0 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1;ENSG00000267368|ENST00000340457|UPK3BL1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 chr7:43988247-43990095|179|52.55|0.14|8.57|-|2|UPK3BL3P,UPK3BL3P|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7511291503906 2 493.750724 985.486896 0.88713 0.00043802 0.23889 0.00011795 1.126 0.00055597 493.750860794064 39.133 0.51605 34.682 34.379 34.896 -4.4509 103 32 5 0 0 0 0.031062 2 23200 23061;23200 54.774 31.625 1 569840000 67519 122 44836 45851 78964;78965 78965 -0.00642805482186759 VAAPLFELY 9 Unmodified _VAAPLFELY_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1022.89208984375 1 1022.55571 1021.54843 0.3011 0.00030789 -0.29627 -0.00030295 0.00483 4.9389E-06 1022.5551844910859 92.808 0.35199 92.351 92.149 92.501 -0.4574 41 17 3 0 0 0 0.32871 1 50650 50650 15.847 1.9411 1 5216400 67520 7563 44837 45852 78966 78966 0.038521262170888804 VAAPLFELY 9 Unmodified _VAAPLFELY_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.781494140625 2 511.781493 1021.54843 0.25961 0.00013287 -0.10247 -5.2444E-05 0.15714 8.0421E-05 511.78145109083437 92.809 0.44642 92.352 92.129 92.575 -0.4574 50 22 3 0 0 0 0.058206 2 50755 50655;50755 42.968 16.627 1 7015200 67521 7563 44837 45852 78967;78968 78968 0.038521262170888804 VAAPLFELY 9 Unmodified _VAAPLFELY_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7816772460938 2 511.781493 1021.54843 1.7138 0.00087709 -0.19463 -9.9609E-05 1.5192 0.00077748 511.7812813705215 92.231 0.33311 92.262 92.135 92.468 0.030197 20 12 2 0 0 0 0.058206 1 51299 51299 42.968 12.743 1 4072700 67522 7563 44837 45852 78969 78969 0.038521262170888804 VAAPLFELY 9 Unmodified _VAAPLFELY_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7822265625 2 511.781493 1021.54843 0.49627 0.00025398 0.40703 0.00020831 0.9033 0.00046229 511.7814848942542 99.932 0.26121 93.756 93.623 93.884 -6.1757 50 18 4 0 0 0 0.058206 1 66636 66636 42.968 16.627 1 256790000 67523 7563 44837 45852 78970 78970 0.038521262170888804 VAAPLFELY 9 Unmodified _VAAPLFELY_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 511.781493 1021.54843 0.23898 0.0001223 1.2707 0.00065033 1.5097 0.00077263 511.78211312738557 94.312 0.17345 93.891 93.778 93.952 -0.42044 0.067601 0.00077839 NaN 42.968 10 9 2 NaN NaN NaN NaN 0 NaN NaN 0 118390 67524 7563 44837 45852 0.038521262170888804 VAAPTREGL 9 Unmodified _VAAPTREGL_ 0 0 0 REV__ENST00000564857.1_1_15:75197493-75199009:-|nuORF REV__ENST00000564857.1_1_15:75197493-75199009:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2581176757812 2 457.258717 912.50288 0.63555 0.00029061 -0.43104 -0.0001971 0.20451 9.3512E-05 457.2590351359576 40.45 0.27382 35.921 35.824 36.097 -4.5294 29 16 2 0 0 0 0.1773 1 24122 24122 25.399 0.40835 1 9687100 + 67525 23063 44838 45853 78971 78971 0.04312900754723614 VAAQNGIL 8 Unmodified _VAAQNGIL_ 0 0 0 nc|ENSG00000123191|P35670-2|ATP7B;nc|ENSG00000123191|P35670-3|ATP7B;nc|ENSG00000123191|P35670-4|ATP7B;ENSG00000123191|ENST00000242839|ATP7B nc|ENSG00000123191|P35670-2|ATP7B nc|ENSG00000123191|P35670-2|ATP7B MSMS AL20221201_MKP_PDAC_01 4 393.227294921875 2 393.229428 784.444303 NaN NaN NaN NaN NaN NaN NaN 94.706 1 88.53 88.03 89.03 -6.1757 0 0 0 0.94061 1 62731 62731 12.532 0 1 67526 3689 44839 45854 78972 78972 0.043458441802386005 VAAQPVVRI 9 Unmodified _VAAQPVVRI_ 0 0 0 ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2673034667969 2 476.800552 951.58655 3.5686 0.0017015 2.1848 0.0010417 5.7535 0.0027433 476.8010947793638 98.101 0.29747 98.083 97.985 98.283 -0.018188 14 10 2 0 0 0 0.21819 1 54448 54448 2.0598 1.2661 1 215970 67527 15628 44840 45855 78973 78973 0.10882056922412175 VAAQSYLY 8 Unmodified _VAAQSYLY_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7344360351562 2 457.734543 913.454533 NaN NaN NaN NaN NaN NaN NaN 46.499 1 46.499 45.999 46.999 0 0 0 0 0.41217 1 25417 25417 52.693 6.9431 1 67528 4341 44841 45856 78974 78974 -0.005655928852092984 VAAQSYLY 8 Unmodified _VAAQSYLY_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7351684570312 2 457.734543 913.454533 1.243 0.00056898 -0.062206 -2.8474E-05 1.1808 0.0005405 457.7344753820538 53.625 0.13439 47.821 47.745 47.879 -5.8042 10 8 2 0 0 0 0.50586 1 33930 33930 34.187 6.0141 1 11601000 67529 4341 44841 45856 78975 78975 -0.005655928852092984 VAARALST 8 Unmodified _VAARALST_ 0 0 0 ENSG00000186326|ENST00000334176|RGS9BP ENSG00000186326|ENST00000334176|RGS9BP ENSG00000186326|ENST00000334176|RGS9BP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2324829101562 2 394.734877 787.455202 0.13105 5.1731E-05 -0.90395 -0.00035682 -0.7729 -0.00030509 394.7346075827642 49.027 0.1623 48.983 48.908 49.07 -0.04369 10 7 2 0 0 0 8.7369 1 26472 26472 4.756 0.42677 1 896450 67530 9469 44842 45857 78976 78976 0.052972465545167324 VAASSSYQI 9 Unmodified _VAASSSYQI_ 0 0 0 REV__nc|ENSG00000112851|Q96RT1-7|ERBIN REV__nc|ENSG00000112851|Q96RT1-7|ERBIN MSMS AL20221201_MKP_PDAC_01 4 463.2336120605469 2 463.234907 924.455261 NaN NaN NaN NaN NaN NaN NaN 49.168 1 43.772 43.272 44.272 -5.3961 0 0 0 0.056448 1 30699 30699 54.774 1.198 1 + 67531 18839 44843 45858 78977 78977 -0.00998798236150833 VAATCQTPKI 10 Unmodified _VAATCQTPKI_ 0 0 0 ENSG00000165799|ENST00000298690|RNASE7 ENSG00000165799|ENST00000298690|RNASE7 ENSG00000165799|ENST00000298690|RNASE7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2792358398438 2 516.281334 1030.54812 0.54985 0.00028388 -0.7606 -0.00039268 -0.21075 -0.00010881 516.2815200251321 43.946 0.61678 39.182 38.826 39.443 -4.7648 91 39 3 0 0 0 0.38092 1 26871 26871 22.736 0.98964 1 142870000 67532 7387 44844 45859 78978 78978 0.03406383225569698 VAATVENRF 9 Unmodified _VAATVENRF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7667541503906 2 503.769448 1005.52434 0.1948 9.8133E-05 0.07364 3.7097E-05 0.26844 0.00013523 503.76950836066567 31.696 0.29736 31.696 31.523 31.82 0 49 14 4 0 0 0 0.0086722 2 16467 16467;16575 88.954 47.114 1 68063000 67533 8967 44845 45860 78979;78980 78979 0.021802857834245515 VAATVENRF 9 Unmodified _VAATVENRF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7703552246094 2 503.769448 1005.52434 -0.32164 -0.00016203 1.1397 0.00057415 0.81808 0.00041212 503.77006103652474 31.665 0.2398 31.536 31.408 31.647 -0.12915 21 9 3 0 0 0 0.036857 1 16448 16448 51.63 24.001 1 4057300 67534 8967 44845 45860 78981 78981 0.021802857834245515 VAATVENRF 9 Unmodified _VAATVENRF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.770263671875 2 503.769448 1005.52434 1.3747 0.00069251 0.11526 5.8063E-05 1.4899 0.00075058 503.7694824953421 35.939 0.5929 31.746 31.425 32.018 -4.1928 98 36 3 0 0 0 0.0086904 2 20851 20851;20986 107.19 63.329 1 213570000 67535 8967 44845 45860 78982;78983 78982 0.021802857834245515 VAATVENRF 9 Unmodified _VAATVENRF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000504793.1_1_4:169337857-169343051:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 503.769448 1005.52434 -0.40828 -0.00020568 -0.41959 -0.00021138 -0.82787 -0.00041706 504.2688221647946 31.888 0.094013 31.759 31.699 31.793 -0.12915 0.025253 -0.00052584 NaN 88.954 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 446110 67536 8967 44845 45860 0.021802857834245515 VAATVQNRF 9 Unmodified _VAATVQNRF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.77783203125 2 503.277441 1004.54033 -0.041406 -2.0839E-05 0.75681 0.00038089 0.71541 0.00036005 503.2779399461162 29.596 0.17373 29.596 29.508 29.682 0 22 12 2 0 0 0 0.0082485 2 15328 15314;15328 96.285 44.655 1 6519700 67537 4951 44846 45861 78984;78985 78985 0.038239920203295696 VAATVQNRF 9 Unmodified _VAATVQNRF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2781066894531 2 503.277441 1004.54033 0.21791 0.00010967 0.80954 0.00040742 1.0275 0.00051709 503.278035433742 29.579 0.19476 29.498 29.406 29.601 -0.080431 18 8 3 0 0 0 0.0090948 1 15313 15313 85.272 41.5 1 25701000 67538 4951 44846 45861 78986 78986 0.038239920203295696 VAATVQNRF 9 Unmodified _VAATVQNRF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2801208496094 2 503.277441 1004.54033 0.94667 0.00047644 1.0204 0.00051354 1.9671 0.00098998 503.27816662725 33.382 0.40591 29.397 29.166 29.572 -3.9853 64 23 4 0 0 0 0.0083938 2 19037 19037;19151 108 47.923 1 201260000 67539 4951 44846 45861 78987;78988 78987 0.038239920203295696 VAATYREWDRG 11 Unmodified _VAATYREWDRG_ 0 0 0 REV__ENST00000525137.1_2_11:71146423-71148912:-|nuORF REV__ENST00000525137.1_2_11:71146423-71148912:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3267211914062 2 662.32565 1322.63675 0.58756 0.00038916 1.3568 0.00089866 1.9444 0.0012878 662.3261727924453 69.814 0.38577 69.845 69.611 69.997 0.030914 60 19 4 0 0 0 0.5551 1 38440 38440 13.615 2.1202 1 11618000 + 67540 22685 44847 45862 78989 78989 -0.011664852104104284 VAAVGHTAF 9 Unmodified _VAAVGHTAF_ 0 0 0 REV__ENSG00000141437|ENST00000269205|SLC25A52 REV__ENSG00000141437|ENST00000269205|SLC25A52 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.73486328125 2 436.734877 871.455202 NaN NaN NaN NaN NaN NaN NaN 39.631 1 39.334 38.834 39.834 -0.29716 0 0 0 0.46757 1 20911 20911 16.942 0 1 + 67541 20534 44848 45863 78990 78990 0.014332465545066952 VAAWGAGG 8 Unmodified _VAAWGAGG_ 0 0 0 ENST00000297273.8_1_7:94139274-94139451:+|nuORF ENST00000297273.8_1_7:94139274-94139451:+|nuORF ENST00000297273.8_1_7:94139274-94139451:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 688.3421020507812 1 688.341301 687.334024 -0.21884 -0.00015064 0.92534 0.00063695 0.7065 0.00048631 688.3412639144852 60.799 0.26461 60.31 60.11 60.374 -0.48932 15 12 2 0 0 0 0.80624 1 33077 33077 2.8892 0 1 4048700 67542 11522 44849 45864 78991 78991 -0.02214956088141662 VACAGPEAP 9 Unmodified _VACAGPEAP_ 0 0 0 REV__ENSG00000203668|ENST00000366553|CHML REV__ENSG00000203668|ENST00000366553|CHML MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.3729858398438 1 814.376365 813.369089 0.13469 0.00010969 -4.019 -0.003273 -3.8844 -0.0031633 814.3725113838941 52.831 0.26064 52.831 52.678 52.938 0 14 11 2 0 0 0 0.28047 1 29224 29224 18.135 4.6271 1 1309700 + 67543 24115 44850 45865 78992 78992 -0.045060813425152446 VACAGPEAP 9 Unmodified _VACAGPEAP_ 0 0 0 REV__ENSG00000203668|ENST00000366553|CHML REV__ENSG00000203668|ENST00000366553|CHML MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 814.376365 813.369089 0.13469 0.00010969 -4.019 -0.003273 -3.8844 -0.0031633 814.3725113838941 52.831 0.26064 52.831 52.678 52.938 0 0 0 NaN 18.135 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1309700 + 67544 24115 44850 45865 -0.045060813425152446 VACHLATEH 9 Unmodified _VACHLATEH_ 0 0 0 REV__ENSG00000173273|ENST00000310430|TNKS REV__ENSG00000173273|ENST00000310430|TNKS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.2640075683594 2 490.734551 979.45455 0.77973 0.00038264 0.88558 0.00043458 1.6653 0.00081723 490.73445813650505 49.794 0.19393 44.255 44.183 44.377 -5.5391 12 11 2 0 0 0 0.19298 1 31205 31205 8.5933 0 1 8965600 + 67545 22718 44851 45866 78993 78993 -0.0359991615683839 VACKRLVS 8 Unmodified _VACKRLVS_ 0 0 0 nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C nc|ENSG00000151067|Q13936-17|CACNA1C nc|ENSG00000151067|Q13936-17|CACNA1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2625122070312 2 438.260205 874.505857 NaN NaN NaN NaN NaN NaN NaN 39.254 1 39.266 38.766 39.766 0.011452 0 0 0 0.97444 1 20903 20903 0.69038 0 1 67546 6088 44852 45867 78994 78994 0.06358452607878462 VADAWTRG 8 Unmodified _VADAWTRG_ 0 0 0 ENST00000369214.2_1_6:100062108-100062660:+|nuORF ENST00000369214.2_1_6:100062108-100062660:+|nuORF ENST00000369214.2_1_6:100062108-100062660:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2224731445312 2 438.222134 874.429715 NaN NaN NaN NaN NaN NaN NaN 16.629 1 16.631 16.131 17.131 0.0010548 0 0 0 0.97444 1 8211 8211 0.79363 0 1 67547 12301 44853 45868 78995 78995 -0.012522279678933046 VADEFLVLN 9 Unmodified _VADEFLVLN_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20221201_MKP_PDAC_01 4 510.2742919921875 2 510.274032 1018.53351 NaN NaN NaN NaN NaN NaN NaN 98.681 1 92.505 92.005 93.005 -6.1757 0 0 0 0.12337 1 65493 65493 39.957 0 1 + 67548 23661 44854 45869 78996 78996 0.024986343490809304 VADGYPVRL 9 Unmodified _VADGYPVRL_ 0 0 0 nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2749938964844 2 495.274367 988.53418 0.1236 6.1214E-05 0.012858 6.3681E-06 0.13645 6.7582E-05 495.27436955585944 46.848 0.34351 46.848 46.718 47.062 0 26 16 2 0 0 0 0.039985 1 25618 25618 49.933 49.933 1 12201000 67549 4116 44855 45870 78997 78997 0.03945473788792242 VADGYPVRL 9 Unmodified _VADGYPVRL_ 0 0 0 nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD nc|ENSG00000129116|Q8WX93-2|PALLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2745056152344 2 495.274367 988.53418 0.7914 0.00039196 -0.39771 -0.00019697 0.39369 0.00019499 495.2742494062896 47.125 0.35512 46.789 46.661 47.016 -0.33664 26 17 2 0 0 0 0.024882 1 25255 25255 58.679 29.597 1 4362400 67550 4116 44855 45870 78998 78998 0.03945473788792242 VADKIHSV 8 Unmodified _VADKIHSV_ 0 0 0 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 ENSG00000276023|ENST00000617516|DUSP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.2044677734375 2 434.747985 867.481417 -0.1844 -8.0168E-05 0.36452 0.00015847 0.18012 7.8306E-05 434.74825238651874 23.424 0.18197 23.424 23.307 23.489 0 11 8 2 0 0 0 8.7369 1 11938 11938 10.074 2.7847 1 519410 67551 10913 44856 45871 78999 78999 0.04237515726003949 VADLCFHTL 9 Unmodified _VADLCFHTL_ 0 0 0 ENST00000481074.1_1_7:132938364-132938703:+|nuORF ENST00000481074.1_1_7:132938364-132938703:+|nuORF ENST00000481074.1_1_7:132938364-132938703:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7572021484375 2 509.754953 1017.49535 0.36105 0.00018404 2.9651 0.0015115 3.3262 0.0016955 509.7565707983064 63.344 0.37344 63.344 63.146 63.52 0 27 19 2 0 0 0 0.18465 1 35298 35298 24.674 0 1 4283600 67552 14071 44857 45872 79000 79000 -0.012695748372152593 VADLHEKY 8 Unmodified _VADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7510070800781 2 487.750724 973.486896 -0.21624 -0.00010547 -0.14173 -6.9128E-05 -0.35797 -0.0001746 487.75055788504744 24.242 0.22912 24.242 24.119 24.348 0 37 15 3 0 0 0 0.20424 1 12349 12349 69.105 31.131 1 5783200 67553 1877 44858 45873 79001 79001 -0.0009080548219344564 VADLHEKY 8 Unmodified _VADLHEKY_ 0 0 0 ENSG00000100804|ENST00000361611|PSMB5;ENST00000493471.2_1_14:23495300-23497005:-|nuORF;nc|ENSG00000100804|P28074-3|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 ENSG00000100804|ENST00000361611|PSMB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.752197265625 2 487.750724 973.486896 0.47189 0.00023016 -0.5042 -0.00024592 -0.032312 -1.576E-05 487.7506799425131 27.327 0.31265 24.29 24.122 24.435 -3.0365 35 15 3 0 0 0 0.10045 2 15079 15079;15199 99.799 35.563 1 41211000 67554 1877 44858 45873 79002;79003 79002 -0.0009080548219344564 VADLVFPWFVF 11 Unmodified _VADLVFPWFVF_ 0 0 0 ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT ENSG00000165102|ENST00000379644|HGSNAT ENSG00000165102|ENST00000379644|HGSNAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.3567504882812 2 670.357899 1338.70125 0.94348 0.00063247 -1.1886 -0.00079681 -0.24516 -0.00016434 670.357011281781 58.345 0.2188 58.285 58.175 58.394 -0.060719 18 10 2 0 0 0 0.6249 1 31780 31780 10.074 0 1 2612200 67555 7291 44859 45874 79004 79004 0.045443216136845876 VADPFVVP 8 Unmodified _VADPFVVP_ 0 0 0 REV__ENST00000524739.1_1_11:134129171-134129964:+|nuORF REV__ENST00000524739.1_1_11:134129171-134129964:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 843.4629516601562 1 843.461081 842.453805 -0.15959 -0.00013461 1.5468 0.0013047 1.3872 0.0011701 843.4619576197788 99.02 0.1423 98.827 98.752 98.894 -0.19321 7 4 2 0 0 0 0.67481 1 54069 54069 19.439 0 1 625560 + 67556 28336 44860 45875 79005 79005 0.026276124657556466 VADPFVVP 8 Unmodified _VADPFVVP_ 0 0 0 REV__ENST00000524739.1_1_11:134129171-134129964:+|nuORF REV__ENST00000524739.1_1_11:134129171-134129964:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 843.461081 842.453805 -0.15959 -0.00013461 1.5468 0.0013047 1.3872 0.0011701 843.4619576197788 99.02 0.1423 98.827 98.752 98.894 -0.19321 0 0 NaN 19.439 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 625560 + 67557 28336 44860 45875 0.026276124657556466 VADPVEAVL 9 Unmodified _VADPVEAVL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 912.5042724609375 1 912.503674 911.496398 0.25334 0.00023117 0.24153 0.0002204 0.49487 0.00045157 912.5039517078246 67.075 0.37013 67.075 66.878 67.248 0 30 16 2 0 0 0 0.047196 2 37420 37327;37420 46.021 6.0636 1 3870800 67558 4940 44861 45876 79006;79007 79007 0.037109628033249464 VADPVEAVL 9 Unmodified _VADPVEAVL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;ENST00000537905.5_1_11:71735188-71747007:-|nuORF;ENST00000534987.5_1_11:71728600-71747007:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.755615234375 2 456.755475 911.496398 0.69247 0.00031629 0.41063 0.00018756 1.1031 0.00050385 456.75552497453305 67.082 0.41087 67.082 66.86 67.271 0 36 18 3 0 0 0 0.042911 1 37421 37421 48.346 12.302 1 3144100 67559 4940 44861 45876 79008 79008 0.037109628033249464 VADPYVVIM 9 Oxidation (M) _VADPYVVIM(Oxidation (M))_ VADPYVVIM(1) VADPYVVIM(44) 0 0 1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7655334472656 2 511.764986 1021.51542 0.47132 0.0002412 0.70535 0.00036097 1.1767 0.00060217 511.7651881005764 56.962 0.45484 56.962 56.746 57.201 0 73 19 5 0 0 0 0.052168 2 31733 31623;31733 44.407 30.899 1 48149000 67560 1064 44862 45877 79009;79010 79010 174 0.0055217610274667095 VADPYVVIM 9 Oxidation (M) _VADPYVVIM(Oxidation (M))_ VADPYVVIM(1) VADPYVVIM(60) 0 0 1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7654418945312 2 511.764986 1021.51542 0.72794 0.00037253 1.4419 0.0007379 2.1698 0.0011104 511.7657026813088 64.969 0.47469 58.793 58.525 59 -6.1757 74 26 4 0 0 0 0.023164 2 42105 42105;42241 60.39 42.255 1 64559000 67561 1064 44862 45877 79011;79012 79011 174 0.0055217610274667095 VADQVERRLI 10 Unmodified _VADQVERRLI_ 0 0 0 REV__ENSG00000181790|ENST00000517894|ADGRB1;REV__ENST00000518820.1_1_8:143599542-143620974:+|nuORF REV__ENSG00000181790|ENST00000517894|ADGRB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 399.859619140625 3 400.234933 1197.68297 1.4791 0.00059197 1.8072 0.0007233 3.2862 0.0013153 400.23523531706536 33.792 0.2866 29.807 29.627 29.914 -3.9853 21 15 2 0 0 0 0.23767 1 19306 19306 1.7423 0.96574 1 3871400 + 67562 23223;28253 44863 45878 79013 79013 0.09203579691711639 VADSEDMTHA 10 Unmodified _VADSEDMTHA_ 0 0 0 REV__nc|ENSG00000142166|P17181-3|IFNAR1 REV__nc|ENSG00000142166|P17181-3|IFNAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1509704589844 3 359.150206 1074.42879 0.27929 0.00010031 -0.70032 -0.00025152 -0.42103 -0.00015121 359.4846197022261 56.962 0.36924 56.962 56.786 57.156 0 26 15 2 0 0 0 0.69064 1 31725 31725 1.9064 0 1 2318200 + 67563 29669 44864 45879 79014 79014 -0.10544855189777991 VADSIELAAL 10 Unmodified _VADSIELAAL_ 0 0 0 REV__ENSG00000107554|ENST00000324109|DNMBP REV__ENSG00000107554|ENST00000324109|DNMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2786560058594 2 501.279315 1000.54408 0.39544 0.00019823 -1.1337 -0.0005683 -0.73826 -0.00037008 501.27876160245506 77.547 0.31182 77.547 77.4 77.712 0 51 27 2 0 0 0 0.14917 1 43166 43166 39.957 0.0076237 1 5656100 + 67564 18564 44865 45880 79015 79015 0.04382617003534506 VAECPAGRV 9 Unmodified _VAECPAGRV_ 0 0 0 REV__ENSG00000106483|ENST00000436072|SFRP4 REV__ENSG00000106483|ENST00000436072|SFRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2308959960938 2 451.231645 900.448736 0.56671 0.00025572 -1.5999 -0.00072194 -1.0332 -0.00046622 451.23059275543045 58.198 0.75681 58.198 57.657 58.414 0 57 31 3 0 0 0 0.48152 1 32311 32311 8.5933 2.2392 1 2464500 + 67565 18512 44866 45881 79016 79016 -0.005470146685070176 VAEKIRDV 8 Unmodified _VAEKIRDV_ 0 0 0 REV__ENSG00000155980|ENST00000455537|KIF5A;REV__ENST00000482151.1_2:149856814-149868187:+|nuORF REV__ENSG00000155980|ENST00000455537|KIF5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2738037109375 2 465.274367 928.53418 NaN NaN NaN NaN NaN NaN NaN 88.785 1 88.281 87.781 88.781 -0.50423 0 0 0 0.97444 1 48553 48553 2.8892 0 1 + 67566 21303;22298 44867 45882 79017 79017 0.06705473788792915 VAENNFQSF 9 Unmodified _VAENNFQSF_ 0 0 0 ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3 ENSG00000139263|ENST00000320743|LRIG3 ENSG00000139263|ENST00000320743|LRIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2432861328125 2 528.243264 1054.47197 NaN NaN NaN NaN NaN NaN NaN 74.984 1 74.984 74.484 75.484 0 0 0 0 0.85029 1 41717 41717 1.4819 0 1 67567 5141 44868 45883 79018 79018 -0.053082973501886954 VAEPGPRVIL 10 Unmodified _VAEPGPRVIL_ 0 0 0 ENST00000556217.5_1_14:21837875-21852161:-|nuORF ENST00000556217.5_1_14:21837875-21852161:-|nuORF ENST00000556217.5_1_14:21837875-21852161:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8195190429688 2 525.818941 1049.62333 0.26225 0.0001379 -0.10665 -5.6079E-05 0.1556 8.1817E-05 525.8192788389368 53.93 0.21798 53.463 53.368 53.586 -0.46664 17 10 2 0 0 0 0.074936 1 29211 29211 52.268 2.3353 1 1662300 67568 15236 44869 45884 79019 79019 0.10050308748327552 VAEQPKKDLHF 11 Unmodified _VAEQPKKDLHF_ 0 0 0 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 ENSG00000130340|ENST00000392185|SNX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.9087829589844 3 437.906705 1310.69829 1.1796 0.00051655 1.2104 0.00053003 2.39 0.0010466 438.24057436182454 50.731 0.70395 45.082 44.79 45.494 -5.649 70 43 3 0 0 0 0.69509 1 31935 31935 4.7159 0 1 93235000 67569 4205 44870 45885 79020 79020 0.05536446488895308 VAESLENFL 9 Unmodified _VAESLENFL_ 0 0 0 nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2 nc|ENSG00000198797|Q9C0B6-2|BRINP2 nc|ENSG00000198797|Q9C0B6-2|BRINP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2632751464844 2 511.263665 1020.51278 0.2981 0.00015241 -0.17919 -9.1615E-05 0.11891 6.0795E-05 511.26354825531706 86.148 0.29554 86.148 86.043 86.339 0 23 14 2 0 0 0 0.46577 1 47716 47716 9.3474 0 1 477400 67570 10155 44871 45886 79021 79021 0.003340439694284214 VAETGLVAR 9 Unmodified _VAETGLVAR_ 0 0 0 REV__ENST00000591064.1_1_19:45001372-45004442:-|nuORF REV__ENST00000591064.1_1_19:45001372-45004442:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.2665710449219 2 458.266542 914.51853 4.2555 0.0019502 -3.9746 -0.0018214 0.28099 0.00012877 458.2638968441583 98.587 0.84212 98.559 98.432 99.274 -0.028282 44 30 3 0 0 0 0.49272 1 54801 54801 7.9102 0 1 1798100 + 67571 29113 44872 45887 79022 79022 0.05785187271749237 VAEYKEEEL 9 Unmodified _VAEYKEEEL_ 0 0 0 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1 ENSG00000182568|ENST00000338745|SATB1 ENSG00000182568|ENST00000338745|SATB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7742309570312 2 555.271687 1108.52882 0.47552 0.00026404 1.7336 0.00096264 2.2092 0.0012267 555.2726783080724 95.952 0.18023 95.952 95.896 96.076 0 16 12 2 0 0 0 0.58466 1 53047 53047 2.3027 0 1 286600 67572 9067 44873 45888 79023 79023 -0.021102945843495036 VAFCIFEYVYF 11 Unmodified _VAFCIFEYVYF_ 0 0 0 ENSG00000128059|ENST00000264220|PPAT ENSG00000128059|ENST00000264220|PPAT ENSG00000128059|ENST00000264220|PPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 700.8320922851562 2 700.8334 1399.65225 0.3211 0.00022504 -2.6178 -0.0018346 -2.2967 -0.0016096 700.8318162881428 99.569 0.16798 93.393 93.306 93.474 -6.1757 25 10 3 0 0 0 0.37677 1 66342 66342 22.736 0 1 34053000 67573 4047 44874 45889 79024 79024 -0.031593347375746816 VAFDEKKNVF 10 Unmodified _VAFDEKKNVF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.5484924316406 3 399.548518 1195.62372 -0.022121 -8.8385E-06 0.052703 2.1057E-05 0.030582 1.2219E-05 399.5485559655973 37.556 0.26815 37.556 37.475 37.743 0 26 13 3 0 0 0 0.095172 1 20004 20004 47.732 29.392 1 6307800 67574 9390 44875 45890 79025 79025 0.03373683677500594 VAFDEKKNVF 10 Unmodified _VAFDEKKNVF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.5484313964844 3 399.548518 1195.62372 0.051007 2.038E-05 -0.048493 -1.9375E-05 0.0025141 1.0045E-06 399.5484303217328 37.944 0.21693 37.672 37.544 37.761 -0.27133 19 10 2 0 0 0 0.11322 1 19939 19939 44.392 31.519 1 5091500 67575 9390 44875 45890 79026 79026 0.03373683677500594 VAFDEKKNVF 10 Unmodified _VAFDEKKNVF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5491027832031 3 399.548518 1195.62372 0.97804 0.00039077 -1.3062 -0.00052191 -0.32821 -0.00013113 399.54840467671704 42.389 0.42567 37.705 37.508 37.934 -4.6846 62 28 3 0 0 0 0.1379 2 25559 25559;25694 41.347 29.119 1 32432000 67576 9390 44875 45890 79027;79028 79027 0.03373683677500594 VAFDEKKNVF 10 Unmodified _VAFDEKKNVF_ 0 0 0 ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB ENSG00000185624|ENST00000331483|P4HB MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8197021484375 2 598.819138 1195.62372 0.29162 0.00017463 -0.91869 -0.00055013 -0.62708 -0.0003755 598.8189639852095 42.406 0.3236 37.721 37.521 37.845 -4.6846 32 21 2 0 0 0 0.023382 1 25639 25639 83.429 55.8 1 7805000 67577 9390 44875 45890 79029 79029 0.03373683677500594 VAFDGITVF 9 Unmodified _VAFDGITVF_ 0 0 0 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 ENSG00000144655|ENST00000273153|CSRNP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.506591796875 1 968.50876 967.501483 0.32207 0.00031192 -0.33802 -0.00032738 -0.015956 -1.5453E-05 968.5082705342879 92.489 0.20477 92.008 91.88 92.085 -0.48092 16 9 2 0 0 0 0.2143 1 50531 50531 21.747 5.8995 1 390160 67578 5628 44876 45891 79030 79030 0.01643266665939791 VAFETVHSM 9 Oxidation (M) _VAFETVHSM(Oxidation (M))_ VAFETVHSM(1) VAFETVHSM(85) 0 0 1 ENSG00000023330|ENST00000484952|ALAS1;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;ENSG00000158578|ENST00000650242|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2 ENSG00000023330|ENST00000484952|ALAS1;nc|ENSG00000158578|P22557-2|ALAS2 ENSG00000023330|ENST00000484952|ALAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7415771484375 2 518.742042 1035.46953 -0.41235 -0.0002139 -1.2564 -0.00065177 -1.6688 -0.00086567 518.7421314084695 30.111 0.35436 30.111 29.847 30.201 0 38 16 3 0 0 0 0.0090851 1 15621 15621 85.357 55.132 1 6787000 67579 541;16304 44877 45892 79031 79031 76 -0.04678469079499337 VAFETVHSM 9 Unmodified _VAFETVHSM_ 0 0 0 ENSG00000023330|ENST00000484952|ALAS1;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;ENSG00000158578|ENST00000650242|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2 ENSG00000023330|ENST00000484952|ALAS1;nc|ENSG00000158578|P22557-2|ALAS2 ENSG00000023330|ENST00000484952|ALAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7446594238281 2 510.744585 1019.47462 0.29096 0.00014861 -2.0904 -0.0010676 -1.7994 -0.00091903 510.74435439569737 46.393 0.33112 41.312 41.082 41.413 -5.0805 44 23 3 0 0 0 0.0083087 1 28583 28583 97.075 53.216 1 41526000 67580 541;16304 44877 45893 79032 79032 -0.03434165216867768 VAFETVHSM 9 Unmodified _VAFETVHSM_ 0 0 0 ENSG00000023330|ENST00000484952|ALAS1;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;ENSG00000158578|ENST00000650242|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2 ENSG00000023330|ENST00000484952|ALAS1;nc|ENSG00000158578|P22557-2|ALAS2 ENSG00000023330|ENST00000484952|ALAS1 MSMS AL20221201_MKP_PDAC_01 4 510.7442626953125 2 510.744585 1019.47462 NaN NaN NaN NaN NaN NaN NaN 46.498 1 41.418 40.918 41.918 -5.0805 0 0 0 0.14 1 28734 28734 37.974 11.09 1 67581 541;16304 44877 45893 79033 79033 -0.03434165216867768 VAFFGWPESTF 11 Unmodified _VAFFGWPESTF_ 0 0 0 REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3057861328125 2 644.305864 1286.59717 0.55276 0.00035615 -1.0003 -0.00064449 -0.44752 -0.00028834 644.3055147806998 59.076 0.36483 59.015 58.801 59.166 -0.060719 49 17 4 0 0 0 0.12183 2 32224 32130;32224 39.95 13.929 1 9089600 + 67582 26984 44878 45894 79034;79035 79035 -0.03466005213840617 VAFGMKICLF 10 Unmodified _VAFGMKICLF_ 0 0 0 REV__ENST00000518547.5_2_8:125740417-125740621:-|nuORF REV__ENST00000518547.5_2_8:125740417-125740621:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8009643554688 2 564.800848 1127.58714 NaN NaN NaN NaN NaN NaN NaN 49.725 1 49.333 48.833 49.833 -0.3923 0 0 0 0.83398 1 26748 26748 10.824 2.2306 1 + 67583 28247 44879 45895 79036 79036 0.02845392255585466 VAFRPIPVDI 10 Unmodified _VAFRPIPVDI_ 0 0 0 REV__ENSG00000162613|ENST00000370768|FUBP1 REV__ENSG00000162613|ENST00000370768|FUBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2284240722656 3 376.225486 1125.65463 -0.23421 -8.8115E-05 -1.066 -0.00040106 -1.3002 -0.00048918 376.5586017460078 31.961 0.22139 31.991 31.887 32.109 0.030106 37 9 5 0 0 0 0.34435 1 16786 16786 24.882 1.0805 1 13933000 + 67584 21664 44880 45896 79037 79037 0.0968288178239618 VAFTGLPP 8 Unmodified _VAFTGLPP_ 0 0 0 ENST00000313552.10_1_2:242664606-242665164:+|nuORF ENST00000313552.10_1_2:242664606-242665164:+|nuORF ENST00000313552.10_1_2:242664606-242665164:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.2295837402344 2 401.228897 800.44324 NaN NaN NaN NaN NaN NaN NaN 17.623 1 15.036 14.536 15.536 -2.5866 0 0 0 0.97444 1 9232 9232 2.8892 0 1 67585 11716 44881 45897 79038 79038 0.03503629811314113 VAGAKEISF 9 Unmodified _VAGAKEISF_ 0 0 0 REV__nc|ENSG00000124006|O75147-2|OBSL1 REV__nc|ENSG00000124006|O75147-2|OBSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2548522949219 2 461.255643 920.496732 0.95901 0.00044235 -0.61152 -0.00028207 0.34749 0.00016028 461.2551023574329 60.545 0.19498 60.545 60.451 60.646 0 11 8 2 0 0 0 0.46577 1 33774 33774 9.3474 0 1 496420 + 67586 19411 44882 45898 79039 79039 0.03330382523188291 VAGAPGPS 8 Unmodified _VAGAPGPS_ 0 0 0 REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.26904296875 1 655.340966 654.33369 -0.073552 -4.8201E-05 -0.6415 -0.0004204 -0.71505 -0.0004686 655.3407009851006 37.479 0.25471 37.479 37.35 37.604 0 20 13 2 0 0 0 8.7369 1 19948 19948 49.669 6.7009 1 3833400 + 67587 29996 44883 45899 79040 79040 -0.007303758079956424 VAGAPGPS 8 Unmodified _VAGAPGPS_ 0 0 0 REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP REV__nc|ENSG00000267908|P0CG00|ZSCAN5DP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 655.8006591796875 1 655.340966 654.33369 0.39872 0.0002613 -0.066408 -4.352E-05 0.33231 0.00021778 655.3410082435901 44.266 0.41138 39.414 39.186 39.597 -4.852 44 29 2 0 0 0 8.7369 1 27093 27093 52.693 0 1 18460000 + 67588 29996 44883 45899 79041 79041 -0.007303758079956424 VAGATLYSV 9 Unmodified _VAGATLYSV_ 0 0 0 ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM ENSG00000165678|ENST00000372134|GHITM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.4796752929688 1 880.47746 879.470183 -0.088226 -7.7681E-05 1.0064 0.00088612 0.91818 0.00080844 880.4786445817489 43.516 0.20593 43.516 43.399 43.605 0 20 9 3 0 0 0 0.48152 1 23676 23676 8.5933 0.68312 1 6762900 67589 7373 44884 45900 79042 79042 0.02562693631853108 VAGAVAGAVL 10 Unmodified _VAGAVAGAVL_ 0 0 0 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.4991455078125 1 827.498529 826.491253 0.2432 0.00020124 0.23008 0.00019039 0.47328 0.00039164 827.4986946395351 60.902 0.351 60.902 60.718 61.069 0 25 14 2 0 0 0 0.34789 1 34012 34012 24.674 6.5389 1 2497500 + 67590 19504 44885 45901 79043 79043 0.07106703731381003 VAGAVAGAVL 10 Unmodified _VAGAVAGAVL_ 0 0 0 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.498291015625 1 827.498529 826.491253 -0.66201 -0.00054781 1.1685 0.00096694 0.5065 0.00041913 827.4992728050391 61.337 0.29486 60.847 60.715 61.009 -0.48932 23 13 2 0 0 0 0.34789 1 33466 33466 24.674 0 1 3539900 + 67591 19504 44885 45901 79044 79044 0.07106703731381003 VAGELLLLIN 10 Unmodified _VAGELLLLIN_ 0 0 0 REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8287963867188 2 527.828975 1053.6434 0.32002 0.00016892 0.18189 9.6005E-05 0.50191 0.00026492 527.8289116543123 93.714 0.26469 93.257 93.111 93.376 -0.4574 18 11 2 0 0 0 0.69626 1 51180 51180 6.2058 0.9089 1 413330 + 67592 19311 44886 45902 79045 79045 0.1187205968831222 VAGELLLLIN 10 Unmodified _VAGELLLLIN_ 0 0 0 REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.828975 1053.6434 0.32002 0.00016892 0.18189 9.6005E-05 0.50191 0.00026492 527.8289116543123 93.714 0.26469 93.257 93.111 93.376 -0.4574 0.00055204 -0.00016074 NaN 6.2058 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 413330 + 67593 19311 44886 45902 0.1187205968831222 VAGELLLLIN 10 Unmodified _VAGELLLLIN_ 0 0 0 REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF REV__ENST00000476968.5_1_1:32560475-32568271:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 527.828975 1053.6434 1.7843 0.00094181 0.48948 0.00025836 2.2738 0.0012002 527.8293223721832 93.233 0.16647 93.256 93.187 93.354 0.022987 -0.00055204 0.00016397 NaN 6.2058 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1169200 + 67594 19311 44886 45902 0.1187205968831222 VAGGAWTY 8 Unmodified _VAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.3948974609375 1 824.39373 823.386454 0.67268 0.00055455 -0.7279 -0.00060007 -0.055217 -4.552E-05 824.3929794586224 46.174 0.21409 46.174 46.018 46.232 0 13 9 2 0 0 0 0.41521 1 25191 25191 42.968 10.851 1 1452500 67595 9998 44887 45903 79046 79046 -0.0323041774520334 VAGGAWTY 8 Unmodified _VAGGAWTY_ 0 0 0 ENST00000412502.1_1_20:43095206-43095302:-|nuORF;ENST00000420712.1_1_2:217364102-217366124:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF ENST00000412502.1_1_20:43095206-43095302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.3935546875 1 824.39373 823.386454 1.2023 0.00099115 -0.4728 -0.00038978 0.72947 0.00060137 824.3930605787727 52.875 0.31334 47.071 46.921 47.234 -5.8042 22 16 2 0 0 0 0.11211 1 33353 33353 96.119 53.151 1 18987000 67596 9998 44887 45903 79047 79047 -0.0323041774520334 VAGHQREKNS 10 Unmodified _VAGHQREKNS_ 0 0 0 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2920532226562 2 563.291611 1124.56867 0.19266 0.00010852 2.3857 0.0013439 2.5784 0.0014524 563.2931448881949 40.171 0.3623 40.171 39.952 40.314 0 35 17 3 0 0 0 0.18021 1 21553 21553 36.127 10.728 1 7351900 + 67597 20449 44888 45904 79048 79048 0.011366899296263 VAGHQREKNS 10 Unmodified _VAGHQREKNS_ 0 0 0 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7944946289062 2 563.291611 1124.56867 0.73601 0.00041459 1.8603 0.0010479 2.5963 0.0014625 563.2929010361763 40.467 0.37937 40.17 39.963 40.343 -0.29716 37 17 3 0 0 0 0.1942 1 21362 21362 34.402 12.655 1 5338000 + 67598 20449 44888 45904 79049 79049 0.011366899296263 VAGHQREKNS 10 Unmodified _VAGHQREKNS_ 0 0 0 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 REV__nc|ENSG00000140090|Q8NFF2-2|SLC24A4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.291611 1124.56867 0.19266 0.00010852 2.3857 0.0013439 2.5784 0.0014524 563.2931448881949 40.171 0.3623 40.171 39.952 40.314 0 0.00070664 0.00031083 NaN 36.127 35 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7351900 + 67599 20449 44888 45904 0.011366899296263 VAGPVNEVLI 10 Unmodified _VAGPVNEVLI_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7974548339844 2 505.797675 1009.5808 0.43393 0.00021948 -0.37378 -0.00018906 0.060152 3.0425E-05 505.79744524023323 62.957 0.397 62.957 62.749 63.146 0 37 16 3 0 0 0 0.44373 1 35074 35074 19.257 1.1106 1 3030600 67600 4530 44889 45905 79050 79050 0.07638913620110088 VAGVVSVGL 9 Unmodified _VAGVVSVGL_ 0 0 0 nc|ENSG00000145832|Q6ZT89-3|SLC25A48;nc|ENSG00000145832|Q6ZT89-2|SLC25A48;ENSG00000145832|ENST00000681962|SLC25A48 nc|ENSG00000145832|Q6ZT89-3|SLC25A48 nc|ENSG00000145832|Q6ZT89-3|SLC25A48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.4871826171875 1 800.48763 799.480354 -0.021915 -1.7542E-05 -0.29166 -0.00023347 -0.31357 -0.00025101 800.4873254024244 61.615 0.23195 61.615 61.497 61.728 0 18 10 2 0 0 0 0.10925 1 34325 34325 32.117 0 1 969000 67601 5729 44890 45906 79051 79051 0.07259301357089498 VAGVVSVGL 9 Unmodified _VAGVVSVGL_ 0 0 0 nc|ENSG00000145832|Q6ZT89-3|SLC25A48;nc|ENSG00000145832|Q6ZT89-2|SLC25A48;ENSG00000145832|ENST00000681962|SLC25A48 nc|ENSG00000145832|Q6ZT89-3|SLC25A48 nc|ENSG00000145832|Q6ZT89-3|SLC25A48 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 800.48763 799.480354 0.20949 0.0001677 -0.12268 -9.82E-05 0.086819 6.9498E-05 800.4879459658034 62.056 0.19207 61.568 61.489 61.681 -0.48764 -0.023353 7.895E-05 NaN 32.117 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 820420 67602 5729 44890 45906 0.07259301357089498 VAGYVSGLFL 10 Unmodified _VAGYVSGLFL_ 0 0 0 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 ENSG00000115665|ENST00000264047|SLC5A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2864990234375 2 513.286943 1024.55933 0.05606 2.8775E-05 1.1021 0.00056572 1.1582 0.00059449 513.2871001504294 70.309 0.32832 70.309 70.167 70.496 0 25 13 3 0 0 0 0.42068 1 39181 39181 20.454 0 1 908930 67603 3151 44891 45907 79052 79052 0.04803528591378381 VAHEENVRF 9 Unmodified _VAHEENVRF_ 0 0 0 ENST00000575894.1_1_16:697354-697711:+|nuORF;ENSG00000172366|ENST00000307650|MCRIP2 ENST00000575894.1_1_16:697354-697711:+|nuORF ENST00000575894.1_1_16:697354-697711:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4991760253906 3 367.520962 1099.54106 -0.39911 -0.00014668 0.79437 0.00029195 0.39526 0.00014527 367.52101174777886 24.649 0.14684 24.649 24.592 24.739 0 14 9 2 0 0 0 0.20572 1 12622 12622 10.151 3.9587 1 999160 67604 8208 44892 45908 79053 79053 -0.004732133306333708 VAHESSLCRV 10 Unmodified _VAHESSLCRV_ 0 0 0 REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5201110839844 3 367.522086 1099.54443 -0.3991 -0.00014668 -2.2629 -0.00083166 -2.662 -0.00097834 367.52101174777886 24.649 0.14684 24.649 24.592 24.739 0 14 9 2 0 0 0 0.67755 1 12616 12616 5.4027 3.3167 1 999160 + 67605 17237 44893 45909 79054 79054 -0.001362865482633424 VAHFPTYAL 9 Unmodified _VAHFPTYAL_ 0 0 0 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 REV__nc|ENSG00000138614|Q96SY0-4|INTS14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7716064453125 2 509.77146 1017.52837 -0.30203 -0.00015397 0.53786 0.00027419 0.23583 0.00012022 509.77159369960543 60.541 0.40277 60.052 59.847 60.249 -0.48932 59 19 4 0 0 0 0.16776 2 32964 32964;33065 26.341 1.6674 1 133510000 + 67606 20344 44894 45910 79055;79056 79055 0.0203037527712695 VAHLAGYS 8 Unmodified _VAHLAGYS_ 0 0 0 REV__ENST00000592005.5_1_18:44497716-44497839:+|nuORF REV__ENST00000592005.5_1_18:44497716-44497839:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8988952636719 2 409.213778 816.413003 -0.044313 -1.8134E-05 1.6729 0.00068457 1.6286 0.00066644 409.2146533130772 75.862 0.21664 75.909 75.797 76.014 0.047951 15 9 2 0 0 0 8.7369 1 41789 41789 6.3541 0 1 3503600 + 67607 29172 44895 45911 79057 79057 -0.0025472885386079724 VAHLFVYMGL 10 Unmodified _VAHLFVYMGL_ 0 0 0 REV__ENSG00000128699|ENST00000392349|ORMDL1 REV__ENSG00000128699|ENST00000392349|ORMDL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8747253417969 3 383.875689 1148.60524 NaN NaN NaN NaN NaN NaN NaN 45.064 1 45.042 44.542 45.542 -0.022064 0 0 0 0.79473 1 24194 24194 7.1017 0.47827 1 + 67608 19630 44896 45912 79058 79058 0.03687850501955836 VAHPVPSP 8 Unmodified _VAHPVPSP_ 0 0 0 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 ENSG00000198597|ENST00000355537|ZNF536 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 803.4422607421875 1 803.441015 802.433738 0.17366 0.00013953 0.19785 0.00015896 0.37151 0.00029849 803.4411861779406 64.6 0.4733 64.115 63.908 64.381 -0.48512 40 21 2 0 0 0 0.72953 1 35163 35163 14.582 0 1 3136000 67609 10110 44897 45913 79059 79059 0.024618615258077625 VAHSLMASAL 10 Unmodified _VAHSLMASAL_ 0 0 0 nc|ENSG00000184321|Q9H342|OR51J1 nc|ENSG00000184321|Q9H342|OR51J1 nc|ENSG00000184321|Q9H342|OR51J1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2685241699219 2 500.268227 998.521901 NaN NaN NaN NaN NaN NaN NaN 62.595 1 62.595 62.095 63.095 0 0 0 0 0.90096 1 34917 34917 7.9102 2.6795 1 67610 16454 44898 45914 79060 79060 0.022581140540978595 VAICKALLY 9 Carbamidomethyl (C) _VAIC(Carbamidomethyl (C))KALLY_ VAIC(1)KALLY VAIC(42)KALLY 0 1 0 ENSG00000230301|ENST00000615035|OR5H6;nc|ENSG00000230301|Q8NGV6|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 ENSG00000230301|ENST00000615035|OR5H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.8003540039062 2 525.804445 1049.59434 -0.57914 -0.00030452 0.40871 0.0002149 -0.17043 -8.9613E-05 525.8044864528572 36.128 0.43185 35.878 35.615 36.046 -0.2497 51 19 4 0 0 0 0.06187 1 18865 18865 42.095 13.608 1 27043000 67611 10614 44899 45915 79061 79061 944 0.07152448127681055 VAIGQLSPL 9 Unmodified _VAIGQLSPL_ 0 0 0 REV__nc|ENSG00000102780|Q86XP1-2|DGKH REV__nc|ENSG00000102780|Q86XP1-2|DGKH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 897.53857421875 1 897.540394 896.533118 -0.15111 -0.00013563 1.2795 0.0011484 1.1284 0.0010128 897.5412708651361 79.138 0.29352 78.652 78.506 78.799 -0.48596 23 12 2 0 0 0 0.12841 1 43299 43299 30.225 1.738 1 1306500 + 67612 18254 44900 45916 79062 79062 0.08071259419898524 VAIKGSVAY 9 Unmodified _VAIKGSVAY_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.2661743164062 2 454.26601 906.517468 1.1711 0.00053201 -0.89377 -0.00040601 0.27737 0.000126 454.2654774485209 36.919 0.34797 32.635 32.509 32.857 -4.2835 31 21 2 0 0 0 0.023481 1 21607 21607 60.074 3.8969 1 7403300 67613 2112 44901 45917 79063 79063 0.06046972902845482 VAIQAVPSL 9 Unmodified _VAIQAVPSL_ 0 0 0 ENSG00000188219|ENST00000683005|POTEE ENSG00000188219|ENST00000683005|POTEE ENSG00000188219|ENST00000683005|POTEE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2724304199219 2 449.273835 896.533118 0.79721 0.00035817 -0.53734 -0.00024141 0.25987 0.00011675 449.27374945849857 78.6 0.32489 78.653 78.532 78.857 0.052452 25 12 3 0 0 0 0.32871 1 43499 43499 15.847 4.2069 1 7350200 67614 9641 44902 45918 79064 79064 0.08071259419898524 VAIRIYHQF 9 Unmodified _VAIRIYHQF_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8849487304688 3 382.885464 1145.63456 -0.086918 -3.328E-05 -0.55227 -0.00021146 -0.63919 -0.00024474 383.21985306240555 45.026 0.16272 45.004 44.875 45.037 -0.022068 12 7 2 0 0 0 0.012148 1 24155 24155 66.457 42.493 1 17498000 67615 4094 44903 45919 79065 79065 0.0675713084247036 VAIRIYHQF 9 Unmodified _VAIRIYHQF_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8861694335938 3 382.885464 1145.63456 1.4679 0.00056205 -0.12909 -4.9427E-05 1.3388 0.00051262 382.8854675042894 50.045 0.2866 44.506 44.377 44.663 -5.5391 42 18 3 0 0 0 0.14602 1 31359 31359 26.268 17.824 1 24348000 67616 4094 44903 45919 79066 79066 0.0675713084247036 VAIRNRLHV 9 Unmodified _VAIRNRLHV_ 0 0 0 nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-5|MST1R;nc|ENSG00000164078|Q04912-6|MST1R;nc|ENSG00000164078|Q04912-4|MST1R;nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-2|MST1R;nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-2|MST1R MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3333740234375 2 539.335624 1076.6567 NaN NaN NaN NaN NaN NaN NaN 99.955 1 99.918 99.418 100.42 -0.036301 0 0 0 0.57317 1 55519 55519 13.508 4.9146 1 67617 7133;16331 44904 45920 79067 79067 0.12143355310877268 VAISPDLC 8 Unmodified _VAISPDLC_ 0 0 0 REV__nc|ENSG00000102710|Q8NEM7-2|SUPT20H REV__nc|ENSG00000102710|Q8NEM7-2|SUPT20H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.2094116210938 2 409.209847 816.40514 NaN NaN NaN NaN NaN NaN NaN 17.72 1 17.734 17.234 18.234 0.013865 0 0 0 0.97444 1 8832 8832 0.69038 0 1 + 67618 18249 44905 45921 79068 79068 -0.010406241656482962 VAISVLGP 8 Unmodified _VAISVLGP_ 0 0 0 REV__nc|ENSG00000079819|O43491-2|EPB41L2 REV__nc|ENSG00000079819|O43491-2|EPB41L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2369689941406 2 378.236722 754.45889 NaN NaN NaN NaN NaN NaN NaN 77.357 1 76.875 76.375 77.375 -0.4826 0 0 0 0.97444 1 42349 42349 0.79363 0 1 + 67619 17655 44906 45922 79069 79069 0.0718391632839257 VAIWVGLVRGL 11 Unmodified _VAIWVGLVRGL_ 0 0 0 REV__ENSG00000175287|ENST00000372592|PHYHD1 REV__ENSG00000175287|ENST00000372592|PHYHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.869140625 2 591.871508 1181.72846 NaN NaN NaN NaN NaN NaN NaN 43.312 1 43.296 42.796 43.796 -0.015667 0 0 0 0.85601 1 23211 23211 9.3831 2.66 1 + 67620 22860 44907 45923 79070 79070 0.14486849944751157 VAKDGSEQI 9 Unmodified _VAKDGSEQI_ 0 0 0 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 ENSG00000156273|ENST00000286800|BACH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7480773925781 2 473.745639 945.476725 -0.14645 -6.9382E-05 3.3851 0.0016037 3.2387 0.0015343 473.7467922333036 33.584 0.26027 33.425 33.27 33.531 -0.15918 25 10 3 0 0 0 0.25681 1 17498 17498 19.257 1.1106 1 3277100 67621 6445 44908 45924 79071 79071 0.001805867925554594 VAKKWSHL 8 Unmodified _VAKKWSHL_ 0 0 0 REV__ENST00000396136.6_1_15:58889748-58968450:-|nuORF REV__ENST00000396136.6_1_15:58889748-58968450:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.3062133789062 2 484.787444 967.560336 NaN NaN NaN NaN NaN NaN NaN 27.025 1 23.988 23.488 24.488 -3.0365 0 0 0 0.9249 1 14944 14944 15.768 1.1865 1 + 67622 26500 44909 45925 79072 79072 0.07525787750932977 VAKMKRLSM 9 Unmodified _VAKMKRLSM_ 0 0 0 REV__ENST00000378953.8_2_5:131746438-131755609:+|nuORF REV__ENST00000378953.8_2_5:131746438-131755609:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8749389648438 3 355.208673 1062.60419 -0.25279 -8.9794E-05 1.4796 0.00052555 1.2268 0.00043576 355.20920516344677 30.916 0.18486 30.946 30.83 31.015 0.030106 10 7 2 0 0 0 0.21641 1 16214 16214 4.1895 1.691 1 791610 + 67623 26274 44910 45926 79073 79073 0.07539312861399594 VALAKGEVTEM 11 Unmodified _VALAKGEVTEM_ 0 0 0 nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;ENST00000460389.5_1_20:30136650-30157019:+|nuORF nc|ENSG00000101294|Q8TCT9-5|HM13 nc|ENSG00000101294|Q8TCT9-5|HM13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3014526367188 2 574.305007 1146.59546 0.73246 0.00042066 -1.3143 -0.00075481 -0.58183 -0.00033415 574.3034358592402 43.683 0.30693 38.918 38.772 39.079 -4.7648 36 18 3 0 0 0 0.041516 1 26555 26555 70.929 11.56 1 15735000 67624 1941 44911 45927 79074 79074 0.028026177059246038 VALAKTPPVL 10 Unmodified _VALAKTPPVL_ 0 0 0 REV__nc|ENSG00000121940|Q96S66-3|CLCC1 REV__nc|ENSG00000121940|Q96S66-3|CLCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.300537109375 2 504.826235 1007.63792 0.71497 0.00036093 0.11246 5.677E-05 0.82742 0.0004177 504.82631028218384 68.866 0.23633 68.891 68.748 68.984 0.025154 20 10 2 0 0 0 0.23489 1 37816 37816 0.45834 0 1 1644300 + 67625 19320 44912 45928 79075 79075 0.13440380896463466 VALALQWR 8 Unmodified _VALALQWR_ 0 0 0 REV__ENSG00000154174|ENST00000284320|TOMM70 REV__ENSG00000154174|ENST00000284320|TOMM70 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7872619628906 2 478.787444 955.560336 0.74524 0.00035681 -0.40734 -0.00019503 0.33791 0.00016179 478.78726979753264 49.182 0.43288 43.785 43.523 43.956 -5.3961 48 28 2 0 0 0 0.72953 1 30596 30596 14.582 1.0738 1 67507000 + 67626 21212 44913 45929 79076 79076 0.0807778775093766 VALDFEQEM 9 Oxidation (M) _VALDFEQEM(Oxidation (M))_ VALDFEQEM(1) VALDFEQEM(57) 0 0 1 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000418987.2_1_9:103493819-103494230:+|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.24560546875 2 549.244615 1096.47468 0.58626 0.000322 -1.5815 -0.00086863 -0.99524 -0.00054663 549.2442064408851 50.739 0.41997 50.739 50.518 50.938 0 61 23 3 0 0 0 0.026094 2 27924 27924;28029 57.471 33.451 1 43751000 67627 1163;9641;9849;15509;13082 44914 45930 79077;79078 79077 195 -0.06970210007557398 VALETMHKMI 10 Unmodified _VALETMHKMI_ 0 0 0 nc|ENSG00000198718|Q9Y4F4|TOGARAM1;ENSG00000198718|ENST00000361462|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 nc|ENSG00000198718|Q9Y4F4|TOGARAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5452270507812 3 391.543722 1171.60934 0.88152 0.00034515 1.1321 0.00044328 2.0136 0.00078843 391.5451847251401 18.033 0.51264 15.412 15.126 15.638 -2.6215 148 42 5 0 0 0 0.54684 1 9382 9382 12.175 5.5513 1 102660000 67628 10130 44915 45931 79079 79079 0.03039571933368279 VALHPFKW 8 Unmodified _VALHPFKW_ 0 0 0 REV__ENSG00000187010|ENST00000328664|RHD REV__ENSG00000187010|ENST00000328664|RHD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 997.5636596679688 1 997.561798 996.554522 0.10973 0.00010946 0.60651 0.00060503 0.71624 0.0007145 997.563677125393 31.931 0.21849 31.961 31.866 32.084 0.030104 13 9 2 0 0 0 0.80975 1 16753 16753 0.79363 0 1 3978600 + 67629 23612 44916 45932 79080 79080 0.05610689239279054 VALHQAHGF 9 Unmodified _VALHQAHGF_ 0 0 0 ENST00000468817.5_1_20:5107738-5108906:+|nuORF ENST00000468817.5_1_20:5107738-5108906:+|nuORF ENST00000468817.5_1_20:5107738-5108906:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 490.2252197265625 2 490.259051 978.503549 0.99818 0.00048937 2.293 0.0011241 3.2911 0.0016135 490.2606604797321 55.643 0.29261 49.722 49.507 49.8 -5.9211 24 17 2 0 0 0 0.16785 1 35345 35345 16.942 10.737 1 8296600 67630 13817 44917 45933 79081 79081 0.013437401944315752 VALHRPDVY 9 Unmodified _VALHRPDVY_ 0 0 0 nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871-1|IGHM nc|ENSG00000211899|P01871-1|IGHM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2941284179688 2 535.293091 1068.57163 -0.6037 -0.00032316 1.5744 0.00084276 0.97069 0.0005196 535.2936138968162 19.065 0.10148 19.088 19.023 19.125 0.023106 10 5 3 0 0 0 0.52844 1 9598 9598 9.3474 4.1168 1 515530 67631 16537 44918 45934 79082 79082 0.04008565054414248 VALHRPDVY 9 Unmodified _VALHRPDVY_ 0 0 0 nc|ENSG00000211899|P01871-1|IGHM;nc|ENSG00000211899|P01871|IGHM nc|ENSG00000211899|P01871-1|IGHM nc|ENSG00000211899|P01871-1|IGHM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2932739257812 2 535.293091 1068.57163 0.10181 5.4497E-05 0.57889 0.00030987 0.6807 0.00036437 535.2934858659208 19.083 0.11531 19.091 19.031 19.146 0.0078487 8 5 2 0 0 0 0.40476 1 9699 9699 12.532 7.7755 1 456520 67632 16537 44918 45934 79083 79083 0.04008565054414248 VALHSLHL 8 Unmodified _VALHSLHL_ 0 0 0 REV__ENST00000494738.5_1_2:241530254-241530335:+|nuORF REV__ENST00000494738.5_1_2:241530254-241530335:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.267333984375 2 445.266345 888.518136 1.2409 0.00055253 0.43321 0.00019289 1.6741 0.00074543 445.26667925520474 19.833 0.36451 17.177 16.987 17.351 -2.6564 40 22 2 0 0 0 0.37649 1 10525 10525 46.921 0 1 8506100 + 67633 27940 44919 45935 79084 79084 0.0694181234256348 VALIHSLVIF 10 Unmodified _VALIHSLVIF_ 0 0 0 ENST00000586796.1_1_17:40739748-40761384:-|nuORF ENST00000586796.1_1_17:40739748-40761384:-|nuORF ENST00000586796.1_1_17:40739748-40761384:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8046875 2 556.347335 1110.68012 1.721 0.00095749 -2.9951 -0.0016663 -1.274 -0.0007088 556.3460871913646 81.464 0.21066 81.523 81.425 81.636 0.059929 14 7 2 0 0 0 0.22667 1 45008 45008 15.847 2.8047 1 1527200 67634 15626 44920 45936 79085 79085 0.12920356304834968 VALKLEPN 8 Unmodified _VALKLEPN_ 0 0 0 ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-3|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A ENSG00000100644|ENST00000337138|HIF1A ENSG00000100644|ENST00000337138|HIF1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2672424316406 2 442.26601 882.517468 NaN NaN NaN NaN NaN NaN NaN 75.992 1 75.512 75.012 76.012 -0.47917 0 0 0 0.97444 1 41600 41600 2.5775 0 1 67635 1860 44921 45937 79086 79086 0.07150972902854846 VALKPLGGL 9 Unmodified _VALKPLGGL_ 0 0 0 ENST00000526757.5_1_11:8772174-8772237:-|nuORF ENST00000526757.5_1_11:8772174-8772237:-|nuORF ENST00000526757.5_1_11:8772174-8772237:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.5673217773438 1 867.566215 866.558939 1.4061 0.0012199 0.021514 1.8665E-05 1.4277 0.0012386 867.5659831425533 105.28 0.37788 99.1 98.828 99.206 -6.1757 229 79 4 0 0 0 0.62242 1 70502 70502 0 0 1 2217200000 67636 14824 44922 45938 79087 79087 0.12032153662198652 VALLASALWI 10 Unmodified _VALLASALWI_ 0 0 0 REV__ENSG00000101188|ENST00000370501|NTSR1 REV__ENSG00000101188|ENST00000370501|NTSR1 MSMS AL20221201_MKP_PDAC_01 4 352.8855590820312 3 352.886582 1055.63792 NaN NaN NaN NaN NaN NaN NaN 85.727 1 79.551 79.051 80.051 -6.1757 0 0 0 0.38297 1 56481 56481 21.59 0 1 + 67637 18142 44923 45939 79088 79088 0.11232380896467475 VALLVETQM 9 Oxidation (M) _VALLVETQM(Oxidation (M))_ VALLVETQM(1) VALLVETQM(96) 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2761535644531 2 510.275718 1018.53688 NaN NaN NaN NaN NaN NaN NaN 53.094 1 53.094 52.594 53.594 0 0 0 0 0.0083389 1 29411 29411 96.285 25.151 1 67638 5168;8329 44924 45940 79089 79089 949 0.028355611314509588 VALLVETQM 9 Oxidation (M) _VALLVETQM(Oxidation (M))_ VALLVETQM(1) VALLVETQM(74) 0 0 1 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2758178710938 2 510.275718 1018.53688 NaN NaN NaN NaN NaN NaN NaN 53.596 1 53.144 52.644 53.644 -0.45173 0 0 0 0.023279 1 29000 29000 74.423 23.568 1 67639 5168;8329 44924 45940 79090 79090 949 0.028355611314509588 VALLVETQM 9 Unmodified _VALLVETQM_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2 ENSG00000173473|ENST00000254480|SMARCC1;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 nc|ENSG00000139613|Q8TAQ2-2|SMARCC2 MSMS AL20221201_MKP_PDAC_01 4 502.2786865234375 2 502.27826 1002.54197 NaN NaN NaN NaN NaN NaN NaN 75.653 1 69.477 68.977 69.977 -6.1757 0 0 0 0.060495 1 49484 49484 53.576 17.531 1 67640 5168;8329 44924 45941 79091 79091 0.0407986499405979 VALLYIVLHL 10 Unmodified _VALLYIVLHL_ 0 0 0 ENST00000486733.2_1_X:71494898-71494955:-|nuORF;ENST00000316084.9_1_X:71493803-71494955:-|nuORF ENST00000486733.2_1_X:71494898-71494955:-|nuORF ENST00000486733.2_1_X:71494898-71494955:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.3692016601562 2 577.37081 1152.72707 NaN NaN NaN NaN NaN NaN NaN 107.3 1 101.12 100.62 101.62 -6.1757 0 0 0 1.0019 1 71773 71773 0.45834 0.057624 1 67641 11735 44925 45942 79092 79092 0.1568121585598874 VALLYIVLHL 10 Unmodified _VALLYIVLHL_ 0 0 0 ENST00000486733.2_1_X:71494898-71494955:-|nuORF;ENST00000316084.9_1_X:71493803-71494955:-|nuORF ENST00000486733.2_1_X:71494898-71494955:-|nuORF ENST00000486733.2_1_X:71494898-71494955:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.369873046875 2 577.37081 1152.72707 NaN NaN NaN NaN NaN NaN NaN 107.88 1 101.7 101.2 102.2 -6.1757 0 0 0 1.0019 1 72124 72124 0.45834 0.057624 1 67642 11735 44925 45942 79093 79093 0.1568121585598874 VALMQLPVAL 10 Unmodified _VALMQLPVAL_ 0 0 0 REV__ENST00000368309.3_1_1:156020308-156021008:-|nuORF REV__ENST00000368309.3_1_1:156020308-156021008:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5491943359375 3 352.215822 1053.62564 NaN NaN NaN NaN NaN NaN NaN 26.251 1 26.278 25.778 26.778 0.026951 0 0 0 0.5926 1 13613 13613 18.373 0 1 + 67643 26006 44926 45943 79094 79094 0.10097021161777775 VALNFIISY 9 Unmodified _VALNFIISY_ 0 0 0 ENSG00000141232|ENST00000499247|TOB1;nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2 ENSG00000141232|ENST00000499247|TOB1;ENSG00000183864|ENST00000327492|TOB2 ENSG00000141232|ENST00000499247|TOB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2951049804688 2 520.294768 1038.57498 1.7687 0.00092026 0.15167 7.8911E-05 1.9204 0.00099917 520.2947931896955 93.189 0.68547 93.212 92.959 93.644 0.022987 60 26 3 0 0 0 0.03327 1 51776 51776 53.576 5.2297 1 8616300 67644 5307;9206 44927 45944 79095 79095 0.057238151084447964 VALPDAAAPY 10 Unmodified _VALPDAAAPY_ 0 0 0 REV__ENSG00000152784|ENST00000415738|PRDM8 REV__ENSG00000152784|ENST00000415738|PRDM8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2604064941406 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 39.361 1 39.372 38.872 39.872 0.011452 0 0 0 0.92825 1 20961 20961 6.7232 0 1 + 67645 21136 44928 45945 79096 79096 0.013503651775977232 VALPGVAVSM 10 Oxidation (M) _VALPGVAVSM(Oxidation (M))_ VALPGVAVSM(1) VALPGVAVSM(48) 0 0 1 ENSG00000111775|ENST00000229379|COX6A1;ENST00000550009.1_1_12:120875908-120876378:+|nuORF ENSG00000111775|ENST00000229379|COX6A1 ENSG00000111775|ENST00000229379|COX6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2646484375 2 480.265153 958.515753 0.35348 0.00016976 -0.28097 -0.00013494 0.072508 3.4823E-05 480.26501324041 55.744 0.29363 55.266 55.026 55.32 -0.47798 22 13 2 0 0 0 0.092434 1 30192 30192 48.346 25.197 1 2355700 67646 2825 44929 45946 79097 79097 494 0.03483595822592633 VALPKCLC 8 Unmodified _VALPKCLC_ 0 0 0 REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.7327575683594 2 423.732435 845.450316 -0.24056 -0.00010193 1.5339 0.00064997 1.2933 0.00054803 423.7328271440786 32.63 0.32346 32.501 32.392 32.716 -0.12915 16 13 2 0 0 0 0.79783 1 17029 17029 7.9102 2.6795 1 1016100 + 67647 26637 44930 45947 79098 79098 0.021409030958807307 VALPKCLC 8 Unmodified _VALPKCLC_ 0 0 0 REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 423.732435 845.450316 -1.1171 -0.00047336 1.882 0.00079748 0.76491 0.00032412 423.7331934832484 32.656 0.15314 32.656 32.58 32.733 0 0.077428 0.00020314 NaN 7.9102 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 793870 + 67648 26637 44930 45947 0.021409030958807307 VALPKCLC 8 Unmodified _VALPKCLC_ 0 0 0 REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF REV__ENST00000404025.2_1_2:32489892-32490824:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 423.732435 845.450316 -0.24056 -0.00010193 1.5339 0.00064997 1.2933 0.00054803 423.7328271440786 32.63 0.32346 32.501 32.392 32.716 -0.12915 -0.077428 -9.1883E-05 NaN 7.9102 16 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1016100 + 67649 26637 44930 45947 0.021409030958807307 VALPKKPHLAL 11 Unmodified _VALPKKPHLAL_ 0 0 0 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 REV__nc|ENSG00000214595|Q6ZMW3-2|EML6 MSMS AL20221201_MKP_PDAC_01 4 396.2606201171875 3 396.260531 1185.75976 NaN NaN NaN NaN NaN NaN NaN 38.678 1 34.244 33.744 34.744 -4.434 0 0 0 0.8958 1 22852 22852 7.4771 3.2876 1 + 67650 24315 44931 45948 79099 79099 0.17431422978847877 VALQIHFTL 9 Unmodified _VALQIHFTL_ 0 0 0 nc|ENSG00000116717|P24522-2|GADD45A;ENSG00000116717|ENST00000370986|GADD45A nc|ENSG00000116717|P24522-2|GADD45A nc|ENSG00000116717|P24522-2|GADD45A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.2845458984375 2 521.30821 1040.60187 0.94467 0.00049247 2.4467 0.0012755 3.3914 0.001768 521.309763539617 90.361 0.66721 84.185 83.739 84.406 -6.1757 61 38 2 0 0 0 0.16785 1 59756 59756 16.942 0 1 13490000 67651 3246 44932 45949 79100 79100 0.08318923719616578 VALSRNPLA 9 Unmodified _VALSRNPLA_ 0 0 0 REV__ENSG00000146278|ENST00000336032|PNRC1 REV__ENSG00000146278|ENST00000336032|PNRC1 MSMS AL20221201_MKP_PDAC_01 4 470.7826232910156 2 470.782359 939.550165 NaN NaN NaN NaN NaN NaN NaN 47.861 1 42.627 42.127 43.127 -5.2339 0 0 0 0.39118 1 29753 29753 20.415 3.3016 1 + 67652 20824 44933 45950 79101 79101 0.0779718002570462 VALSSCKV 8 Unmodified _VALSSCKV_ 0 0 0 REV__ENSG00000007908|ENST00000333360|SELE REV__ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.7244567871094 2 403.725664 805.436775 0.075683 3.0555E-05 -1.7769 -0.00071739 -1.7012 -0.00068683 403.72435962088866 72.49 0.42557 72.49 72.16 72.585 0 25 17 2 0 0 0 0.64853 1 40329 40329 21.747 3.6117 1 788470 + 67653 17015 44934 45951 79102 79102 0.02627368588309764 VALVAAAVY 9 Unmodified _VALVAAAVY_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 876.51953125 1 876.518931 875.511654 -0.46596 -0.00040842 0.6626 0.00058078 0.19664 0.00017236 876.519284931931 70.278 0.37232 69.799 69.641 70.013 -0.47903 43 21 3 0 0 0 0.047696 2 38480 38380;38480 45.75 9.2838 1 8673900 67654 2277 44935 45952 79103;79104 79104 0.06891874391180863 VALVAAAVY 9 Unmodified _VALVAAAVY_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 876.5194091796875 1 876.518931 875.511654 0.50542 0.00044301 0.4493 0.00039382 0.95472 0.00083683 876.5193046000578 69.783 0.27242 69.814 69.683 69.955 0.030914 21 13 2 0 0 0 0.085487 1 38353 38353 36.466 0 1 2575600 67655 2277 44935 45952 79105 79105 0.06891874391180863 VALVAAAVY 9 Unmodified _VALVAAAVY_ 0 0 0 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 ENSG00000105131|ENST00000221730|EPHX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 876.5167846679688 1 876.518931 875.511654 0.43814 0.00038404 -0.40004 -0.00035064 0.038102 3.3397E-05 876.5186270466612 76.404 0.80074 70.228 70.059 70.86 -6.1757 80 43 2 0 0 0 0.047696 4 49941 49941;50066;50187;50300 45.75 9.2838 1 18717000 67656 2277 44935 45952 79106;79107;79108;79109 79106 0.06891874391180863 VALVKDETL 9 Unmodified _VALVKDETL_ 0 0 0 REV__ENSG00000197454|ENST00000355281|OR2L5 REV__ENSG00000197454|ENST00000355281|OR2L5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2897338867188 2 494.289682 986.564812 -0.012342 -6.1007E-06 -0.25065 -0.00012389 -0.26299 -0.00012999 494.2895286405152 51.833 0.24113 51.833 51.689 51.93 0 21 10 3 0 0 0 0.047196 1 28670 28670 46.021 2.2486 1 5873400 + 67657 23927 44936 45953 79110 79110 0.07099207383191697 VALYPPWS 8 Unmodified _VALYPPWS_ 0 0 0 ENST00000475696.5_1_2:220110721-220112662:+|nuORF ENST00000475696.5_1_2:220110721-220112662:+|nuORF ENST00000475696.5_1_2:220110721-220112662:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7473449707031 2 466.747453 931.480354 0.57288 0.00026739 -0.15174 -7.0826E-05 0.42113 0.00019656 466.7470637400684 82.225 0.26553 81.73 81.629 81.895 -0.4952 16 10 2 0 0 0 0.79783 1 45039 45039 7.9102 2.1497 1 905240 67658 13967 44937 45954 79111 79111 0.0118730135708347 VALYPPWS 8 Unmodified _VALYPPWS_ 0 0 0 ENST00000475696.5_1_2:220110721-220112662:+|nuORF ENST00000475696.5_1_2:220110721-220112662:+|nuORF ENST00000475696.5_1_2:220110721-220112662:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 466.747453 931.480354 1.6701 0.00077952 0.055295 2.5809E-05 1.7254 0.00080532 466.747195217138 81.598 0.26989 81.658 81.533 81.803 0.059929 -0.036055 0.00013597 NaN 7.9102 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 921990 67659 13967 44937 45954 0.0118730135708347 VALYVGLIA 9 Unmodified _VALYVGLIA_ 0 0 0 nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A nc|ENSG00000113763|Q6ZN44-3|UNC5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5669555664062 1 918.565881 917.558604 0.68855 0.00063248 0.037619 3.4556E-05 0.72617 0.00066704 918.5658681741163 101.37 0.1666 95.199 95.125 95.291 -6.1757 16 8 3 0 0 0 0.1492 1 68045 68045 28.173 0 1 64221000 67660 3000 44938 45955 79112 79112 0.09652733942334635 VAMEEDFY 8 Unmodified _VAMEEDFY_ 0 0 0 REV__nc|ENSG00000120539|Q96GX5-2|MASTL REV__nc|ENSG00000120539|Q96GX5-2|MASTL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2320556640625 2 502.207501 1002.40045 0.65934 0.00033113 -1.4198 -0.00071303 -0.76044 -0.0003819 502.20630133638474 53.072 0.15879 53.072 52.982 53.141 0 10 7 2 0 0 0 8.7369 1 29403 29403 5.7604 1.0044 1 699550 + 67661 19248 44939 45956 79113 79113 -0.10065553099070712 VAMELACMGF 10 Unmodified _VAMELACMGF_ 0 0 0 REV__ENST00000460499.5_1_2:27659579-27664676:+|nuORF;REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF REV__ENST00000529747.5_1_8:144917890-144921694:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8274536132812 3 357.827241 1070.45989 -0.53601 -0.0001918 0.77261 0.00027646 0.2366 8.4661E-05 357.8276670522834 26.616 0.37502 26.616 26.428 26.803 0 44 17 4 0 0 0 0.57332 1 13662 13662 7.1017 2.2047 1 3858300 + 67662 23481;18958 44940 45957 79114 79114 -0.07251696680896202 VAMETLCT 8 Unmodified _VAMETLCT_ 0 0 0 ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF ENSG00000218336|ENST00000511685|TENM3 ENSG00000218336|ENST00000511685|TENM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2020568847656 2 434.201164 866.387775 NaN NaN NaN NaN NaN NaN NaN 36.494 1 36.494 35.994 36.994 0 0 0 0 0.97444 1 19362 19362 2.8892 0 1 67663 10544 44941 45958 79115 79115 -0.050762877629381364 VAMGPRCLT 9 Unmodified _VAMGPRCLT_ 0 0 0 REV__ENST00000542456.5_1_9:130647660-130647927:-|nuORF REV__ENST00000542456.5_1_9:130647660-130647927:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2440795898438 2 474.243698 946.472843 1.4197 0.00067328 -0.16924 -8.0261E-05 1.2504 0.00059302 474.2436929266513 102.92 0.072243 96.745 96.713 96.785 -6.1757 35 19 2 0 0 0 0.54444 1 69048 69048 4.756 2.1785 1 6521700 + 67664 28614 44942 45959 79116 79116 -0.0025349750650320857 VAMLPLLF 8 Unmodified _VAMLPLLF_ 0 0 0 REV__nc|ENSG00000150054|Q5T2T1-2|MPP7 REV__nc|ENSG00000150054|Q5T2T1-2|MPP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2731628417969 2 452.27225 902.529947 NaN NaN NaN NaN NaN NaN NaN 88.76 1 88.255 87.755 88.755 -0.50423 0 0 0 0.97444 1 48540 48540 0.79363 0 1 + 67665 29700 44943 45960 79117 79117 0.07478293041549477 VAMSEFPA 8 Unmodified _VAMSEFPA_ 0 0 0 nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 nc|ENSG00000147202|O60879-2|DIAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.3971557617188 1 851.396767 850.38949 0.79683 0.00067842 -0.52744 -0.00044906 0.26939 0.00022936 851.3965185224613 83.228 0.53608 77.052 76.808 77.345 -6.1757 73 28 4 0 0 0 0.37649 2 54712 54712;54841 46.921 3.9529 1 26217000 67666 5834 44944 45961 79118;79119 79118 -0.04168910682687965 VAMSRQPV 8 Unmodified _VAMSRQPV_ 0 0 0 REV__ENSG00000018408|ENST00000360632|WWTR1 REV__ENSG00000018408|ENST00000360632|WWTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2410278320312 2 444.242012 886.469472 -0.35355 -0.00015706 -1.2615 -0.00056043 -1.6151 -0.00071749 444.2416405442003 55.342 0.19575 55.342 55.241 55.437 0 12 8 2 0 0 0 0.80763 1 30761 30761 2.0598 0 1 1120400 + 67667 17095 44945 45962 79120 79120 0.02169575711161542 VANAHSDIQ 9 Unmodified _VANAHSDIQ_ 0 0 0 ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF ENSG00000135362|ENST00000530639|PRR5L ENSG00000135362|ENST00000530639|PRR5L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2815246582031 2 477.735606 953.456658 0.84005 0.00040132 1.0319 0.00049297 1.8719 0.00089429 477.73616321741196 50.702 0.22314 50.288 50.192 50.415 -0.41351 17 10 2 0 0 0 0.19758 1 27324 27324 13.042 3.695 1 1080100 67668 4695 44946 45963 79121 79121 -0.02193164147377047 VANAPSPPES 10 Unmodified _VANAPSPPES_ 0 0 0 RNF214-SIDT2|1|fusion;ENST00000529869.1_1_11:117104988-117109857:+|nuORF;ENSG00000167257|ENST00000300650|RNF214;nc|ENSG00000167257|Q8ND24-2|RNF214 RNF214-SIDT2|1|fusion;ENSG00000167257|ENST00000300650|RNF214 ENSG00000167257|ENST00000300650|RNF214 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7359619140625 2 484.737814 967.461075 NaN NaN NaN NaN NaN NaN NaN 40.796 1 40.796 40.296 41.296 0 0 0 0 0.087592 1 21953 21953 52.268 5.3475 1 67669 7591;30150 44947 45964 79122 79122 -0.023956997244681588 VANFMGGI 8 Unmodified _VANFMGGI_ 0 0 0 ENSG00000111110|ENST00000228705|PPM1H ENSG00000111110|ENST00000228705|PPM1H ENSG00000111110|ENST00000228705|PPM1H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.7053527832031 2 404.704731 807.39491 NaN NaN NaN NaN NaN NaN NaN 27.179 1 27.179 26.679 27.679 0 0 0 0 0.97444 1 13996 13996 0.79363 0 1 67670 2761 44948 45965 79123 79123 -0.016491871002017433 VANKEYVAY 9 Unmodified _VANKEYVAY_ 0 0 0 nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1 nc|ENSG00000113719|Q969X5-2|ERGIC1 nc|ENSG00000113719|Q969X5-2|ERGIC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7719116210938 2 528.771657 1055.52876 -0.15223 -8.0496E-05 -0.12964 -6.8549E-05 -0.28187 -0.00014905 528.771851304476 28.905 0.54681 28.905 28.781 29.328 0 37 26 2 0 0 0 0.044011 1 14939 14939 47.749 26.212 1 3004500 67671 2993 44949 45966 79124 79124 0.00321750206330762 VANKEYVAY 9 Unmodified _VANKEYVAY_ 0 0 0 nc|ENSG00000113719|Q969X5-2|ERGIC1;ENSG00000113719|ENST00000393784|ERGIC1 nc|ENSG00000113719|Q969X5-2|ERGIC1 nc|ENSG00000113719|Q969X5-2|ERGIC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7723999023438 2 528.771657 1055.52876 0.96455 0.00051003 -0.31735 -0.0001678 0.6472 0.00034222 528.7713826926993 32.488 0.3016 28.632 28.494 28.796 -3.8562 26 15 2 0 0 0 0.0082475 1 18497 18497 92.653 38.821 1 9395700 67672 2993 44949 45966 79125 79125 0.00321750206330762 VANNIFYF 8 Unmodified _VANNIFYF_ 0 0 0 ENSG00000243710|ENST00000372492|CFAP57;nc|ENSG00000243710|Q96MR6-2|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 ENSG00000243710|ENST00000372492|CFAP57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2497863769531 2 494.25036 986.486168 0.89575 0.00044272 -0.43231 -0.00021367 0.46343 0.00022905 494.2500483288347 66.81 0.70284 66.828 66.654 67.357 0.018028 50 34 2 0 0 0 0.80044 1 36867 36867 6.3541 0 1 5150300 67673 10713 44950 45967 79126 79126 -0.007616001312385379 VANPNSAIF 9 Unmodified _VANPNSAIF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7454528808594 2 466.745442 931.476331 0.54412 0.00025396 -0.11039 -5.1523E-05 0.43373 0.00020244 466.74541779377256 50.268 0.38111 50.268 50.075 50.456 0 43 17 3 0 0 0 0.026094 2 27786 27673;27786 57.471 25.166 1 11495000 67674 16107;2451 44951 45968 79127;79128 79128 0.007852118633763894 VANPNSAIF 9 Unmodified _VANPNSAIF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4832153320312 1 932.483608 931.476331 0.44868 0.00041839 -0.99882 -0.00093138 -0.55013 -0.00051299 932.4825114655927 50.293 0.25753 50.293 50.154 50.411 0 19 11 2 0 0 0 0.07916 1 27724 27724 37.974 7.3375 1 1947900 67675 16107;2451 44951 45968 79129 79129 0.007852118633763894 VANPNSAIF 9 Unmodified _VANPNSAIF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7456665039062 2 466.745442 931.476331 0.64619 0.0003016 -0.045941 -2.1443E-05 0.60024 0.00028016 466.74538698008047 50.727 0.40552 50.314 50.112 50.518 -0.41351 53 19 4 0 0 0 0.03568 1 27309 27309 52.268 14.093 1 17162000 67676 16107;2451 44951 45968 79130 79130 0.007852118633763894 VANPNSAIF 9 Unmodified _VANPNSAIF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.7458190917969 2 466.745442 931.476331 0.9518 0.00044425 -0.55942 -0.00026111 0.39238 0.00018314 466.74533791023805 57.44 0.50004 51.412 51.181 51.681 -6.0275 49 26 2 0 0 0 0.022193 2 36660 36660;36781 61.357 13.609 1 80290000 67677 16107;2451 44951 45968 79131;79132 79131 0.007852118633763894 VANPNSAIF 9 Unmodified _VANPNSAIF_ 0 0 0 nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H ENSG00000106682|ENST00000265753|EIF4H MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.4835815429688 1 932.483608 931.476331 1.0519 0.00098092 -0.82889 -0.00077292 0.22305 0.00020799 932.4829414570814 57.447 0.23876 51.42 51.313 51.552 -6.0275 21 12 2 0 0 0 0.010611 1 36732 36732 78.728 27.098 1 26179000 67678 16107;2451 44951 45968 79133 79133 0.007852118633763894 VANRAVCQY 9 Unmodified _VANRAVCQY_ 0 0 0 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2564697265625 2 512.255651 1022.49675 0.25809 0.00013221 2.6789 0.0013723 2.937 0.0015045 512.256611820997 54.988 0.13317 54.988 54.944 55.077 0 8 5 2 0 0 0 0.2001 1 30580 30580 23.148 2.2772 1 1086100 + 67679 24695 44952 45969 79134 79134 -0.013599407484662152 VANRAVCQY 9 Unmodified _VANRAVCQY_ 0 0 0 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 REV__nc|ENSG00000283703|P0DP72|VSIG10L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.255651 1022.49675 0.25809 0.00013221 2.6789 0.0013723 2.937 0.0015045 512.256611820997 54.988 0.13317 54.988 54.944 55.077 0 0 0 NaN 23.148 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1086100 + 67680 24695 44952 45969 -0.013599407484662152 VANSEEIAF 9 Unmodified _VANSEEIAF_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2416687011719 2 490.24019 978.465826 0.036054 1.7675E-05 0.091719 4.4964E-05 0.12777 6.2639E-05 490.24037093869015 51.852 0.26572 51.852 51.642 51.908 0 20 11 2 0 0 0 0.06187 1 28649 28649 42.095 20.348 1 2873500 67681 2006 44953 45970 79135 79135 -0.024268155817139814 VANSVALLY 9 Unmodified _VANSVALLY_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 949.535888671875 1 949.535309 948.528032 0.54352 0.00051609 -1.2929 -0.0012277 -0.74942 -0.0007116 949.5351095971824 64.453 0.19288 63.968 63.867 64.059 -0.48512 11 8 2 0 0 0 0.12424 1 35161 35161 30.637 2.1497 1 640740 67682 4738 44954 45971 79136 79136 0.05170955557287016 VANYNNEY 8 Unmodified _VANYNNEY_ 0 0 0 REV__ENSG00000186532|ENST00000305513|SMYD4 REV__ENSG00000186532|ENST00000305513|SMYD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7806396484375 2 493.714339 985.414125 0.5284 0.00026088 -3.4265 -0.0016917 -2.8981 -0.0014308 493.7116514412203 49.493 0.25375 49.493 49.352 49.606 0 26 10 4 0 0 0 8.7369 1 27264 27264 6.3541 0 1 1584500 + 67683 23580 44955 45972 79137 79137 -0.07916559275611235 VAPAGRCEV 9 Unmodified _VAPAGRCEV_ 0 0 0 REV__ENSG00000151640|ENST00000338492|DPYSL4 REV__ENSG00000151640|ENST00000338492|DPYSL4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2537841796875 2 451.231645 900.448736 0.56671 0.00025572 -1.5999 -0.00072194 -1.0332 -0.00046622 451.23059275543045 58.198 0.75681 58.198 57.657 58.414 0 57 31 3 0 0 0 0.15246 1 32222 32222 19.439 7.7987 1 2464500 + 67684 21079 44956 45973 79138 79138 -0.005470146685183863 VAPAGRCEV 9 Unmodified _VAPAGRCEV_ 0 0 0 REV__ENSG00000151640|ENST00000338492|DPYSL4 REV__ENSG00000151640|ENST00000338492|DPYSL4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 451.231645 900.448736 0.17901 8.0773E-05 -3.0011 -0.0013542 -2.8221 -0.0012734 451.2301234941067 58.483 0.16855 57.992 57.901 58.07 -0.49079 -0.023053 -0.00027923 NaN 19.439 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1467900 + 67685 21079 44956 45973 -0.005470146685183863 VAPALLAPA 9 Unmodified _VAPALLAPA_ 0 0 0 REV__ENSG00000072840|ENST00000264956|EVC REV__ENSG00000072840|ENST00000264956|EVC MULTI-MSMS AL20221201_MKP_PDAC_01 4 823.5127563476562 1 822.508366 821.501089 1.2424 0.0010219 -0.72344 -0.00059504 0.51895 0.00042684 822.5075513272805 61.135 0.38179 54.987 54.793 55.175 -6.1478 32 19 2 0 0 0 0.1492 1 39286 39286 28.173 0 1 26277000 + 67686 17527 44957 45974 79139 79139 0.08319891736744012 VAPALPNR 8 Unmodified _VAPALPNR_ 0 0 0 REV__ENSG00000103148|ENST00000611875|NPRL3 REV__ENSG00000103148|ENST00000611875|NPRL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2509765625 2 419.250695 836.486836 NaN NaN NaN NaN NaN NaN NaN 50.925 1 50.871 50.371 51.371 -0.053871 0 0 0 0.97348 1 27551 27551 5.7604 0 1 + 67687 18284 44958 45975 79140 79140 0.06205239308462751 VAPFTIAR 8 Unmodified _VAPFTIAR_ 0 0 0 nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.7613220214844 2 437.760895 873.507237 0.97033 0.00042477 -0.34849 -0.00015255 0.62185 0.00027222 437.76068548194155 66.807 0.44814 66.825 66.653 67.101 0.017357 51 21 3 0 0 0 0.46494 1 36720 36720 38.151 2.107 1 33408000 67688 6984 44959 45976 79141 79141 0.06542409968267293 VAPFTIAR 8 Unmodified _VAPFTIAR_ 0 0 0 nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 nc|ENSG00000163359|P12111-4|COL6A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7611389160156 2 437.760895 873.507237 1.2975 0.00056801 -0.29837 -0.00013061 0.99917 0.0004374 437.76063241546456 89.378 1.0154 83.203 82.636 83.651 -6.1757 106 56 2 0 0 0 0.55032 1 59271 59271 30.225 1.738 1 27058000 67689 6984 44959 45976 79142 79142 0.06542409968267293 VAPHSRGL 8 Unmodified _VAPHSRGL_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.7400512695312 2 418.740494 835.466435 NaN NaN NaN NaN NaN NaN NaN 28.712 1 28.712 28.212 29.212 0 0 0 0 0.9706 1 14843 14843 6.3541 0 1 + 67690 23075 44960 45977 79143 79143 0.042120686486555314 VAPIRKWS 8 Unmodified _VAPIRKWS_ 0 0 0 REV__nc|ENSG00000100330|Q13615-3|MTMR3 REV__nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7870788574219 2 478.787444 955.560336 -0.049987 -2.3933E-05 0.42005 0.00020111 0.37006 0.00017718 478.7876108475286 44.577 0.31269 44.555 44.386 44.698 -0.022064 39 16 3 0 0 0 0.52622 1 23975 23975 32.305 2.0807 1 35624000 + 67691 18044 44961 45978 79144 79144 0.0807778775093766 VAPIRKWS 8 Unmodified _VAPIRKWS_ 0 0 0 REV__nc|ENSG00000100330|Q13615-3|MTMR3 REV__nc|ENSG00000100330|Q13615-3|MTMR3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.6986389160156 2 478.787444 955.560336 0.74524 0.00035681 -0.40734 -0.00019503 0.33791 0.00016179 478.78726979753264 49.182 0.43288 43.785 43.523 43.956 -5.3961 48 28 2 0 0 0 8.7369 1 30587 30587 26.884 0 1 67507000 + 67692 18044 44961 45978 79145 79145 0.0807778775093766 VAPKGPKI 8 Unmodified _VAPKGPKI_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21;ENST00000497331.2_1_1:18688571-18704817:+|nuORF ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2660827636719 2 405.265813 808.517074 1.6901 0.00068494 -0.64427 -0.0002611 1.0458 0.00042384 405.26533698888767 109.77 0.12729 103.59 103.56 103.69 -6.1757 32 28 2 0 0 0 0.81107 1 73299 73299 0 0 1 1844400 67693 3285 44962 45979 79146 79146 0.10515597973642343 VAPRSAARRC 10 Unmodified _VAPRSAARRC_ 0 0 0 REV__ENST00000479293.5_1_2:73298111-73298330:-|nuORF REV__ENST00000479293.5_1_2:73298111-73298330:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.7185974121094 3 362.86982 1085.58763 0.82786 0.0003004 1.1652 0.0004228 1.993 0.00072321 362.869992804593 14.798 0.13253 12.271 12.21 12.343 -2.5273 34 23 2 0 0 0 0.23983 1 7554 7554 2.6312 0.54523 1 2108100 + 67694 27654 44963 45980 79147 79147 0.04825948019674797 VAPSLLGA 8 Unmodified _VAPSLLGA_ 0 0 0 REV__ENST00000254940.9_1_16:69373547-69373604:+|nuORF REV__ENST00000254940.9_1_16:69373547-69373604:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.2210693359375 2 364.221072 726.42759 1.6012 0.0005832 -2.7024 -0.00098426 -1.1011 -0.00040106 364.2206740835126 41.046 0.41508 36.438 36.339 36.754 -4.6079 32 25 2 0 0 0 8.7369 1 24557 24557 8.5933 0 1 18547000 + 67695 24907 44964 45981 79148 79148 0.053433432942824766 VAPSYPELF 9 Unmodified _VAPSYPELF_ 0 0 0 REV__ENSG00000105464|ENST00000263269|GRIN2D REV__ENSG00000105464|ENST00000263269|GRIN2D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7618713378906 2 511.7633 1021.51205 NaN NaN NaN NaN NaN NaN NaN 57.191 1 57.125 56.625 57.625 -0.066036 0 0 0 0.46757 1 31127 31127 16.942 3.4344 1 + 67696 18427 44965 45982 79149 79149 0.002152493203652739 VAPVEEPW 8 Unmodified _VAPVEEPW_ 0 0 0 REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF REV__ENST00000248846.9_2_22:50664617-50678653:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4701538085938 1 926.46181 925.454533 1.2782 0.0011842 0.47616 0.00044115 1.7543 0.0016253 926.4618095738703 62.999 0.47382 56.823 56.526 57 -6.1757 53 24 3 0 0 0 0.78849 1 40623 40623 9.3474 0.75416 1 42883000 + 67697 24873 44966 45983 79150 79150 -0.011175928851912431 VAPVRSVLH 9 Unmodified _VAPVRSVLH_ 0 0 0 REV__ENST00000378344.6_1_1:3545551-3545731:+|nuORF REV__ENST00000378344.6_1_1:3545551-3545731:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2983093261719 2 489.298176 976.581799 NaN NaN NaN NaN NaN NaN NaN 18.866 1 18.872 18.372 19.372 0.0060463 0 0 0 0.82015 1 9576 9576 5.2307 2.3415 1 + 67698 26264 44967 45984 79151 79151 0.09257172779666689 VAQEETCLM 9 Unmodified _VAQEETCLM_ 0 0 0 REV__ENST00000585075.1_1_17:73268124-73268835:+|nuORF REV__ENST00000585075.1_1_17:73268124-73268835:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2282104492188 2 512.22791 1022.44127 NaN NaN NaN NaN NaN NaN NaN 38.839 1 38.839 38.339 39.339 0 0 0 0 0.6032 1 20771 20771 12.532 1.7076 1 + 67699 29090 44968 45985 79152 79152 -0.06905535051100742 VAQETPFGM 9 Unmodified _VAQETPFGM_ 0 0 0 REV__ENSG00000100263|ENST00000216085|RHBDD3 REV__ENSG00000100263|ENST00000216085|RHBDD3 MSMS AL20221201_MKP_PDAC_01 4 490.2330627441406 2 490.23131 978.448068 NaN NaN NaN NaN NaN NaN NaN 47.004 1 41.923 41.423 42.423 -5.0805 0 0 0 0.36554 1 29125 29125 21.747 1.293 1 + 67700 18035 44969 45986 79153 79153 -0.0420185410821432 VAQGIVLFHS 10 Unmodified _VAQGIVLFHS_ 0 0 0 REV__ENSG00000143199|ENST00000367851|ADCY10 REV__ENSG00000143199|ENST00000367851|ADCY10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5387268066406 3 357.537953 1069.59203 NaN NaN NaN NaN NaN NaN NaN 45.188 1 45.16 44.66 45.66 -0.028011 0 0 0 0.85122 1 24264 24264 5.7834 1.5939 1 + 67701 20613 44970 45987 79154 79154 0.06001735714221468 VAQHYASLQEY 11 Unmodified _VAQHYASLQEY_ 0 0 0 ENSG00000138002|ENST00000260570|IFT172;ENST00000507184.5_1_2:27680991-27709067:-|nuORF;nc|ENSG00000138002|Q9UG01-2|IFT172 ENSG00000138002|ENST00000260570|IFT172 ENSG00000138002|ENST00000260570|IFT172 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8789978027344 3 436.878815 1307.61462 NaN NaN NaN NaN NaN NaN NaN 20.56 1 20.56 20.06 21.06 0 0 0 0 0.9428 1 10352 10352 0.50596 0.23694 1 67702 5001 44971 45988 79155 79155 -0.026887096788186682 VAQIDIGRTFL 11 Unmodified _VAQIDIGRTFL_ 0 0 0 REV__ENSG00000110367|ENST00000534980|DDX6 REV__ENSG00000110367|ENST00000534980|DDX6 MSMS AL20221201_MKP_PDAC_01 4 616.8518676757812 2 616.853512 1231.69247 NaN NaN NaN NaN NaN NaN NaN 91.196 1 85.02 84.52 85.52 -6.1757 0 0 0 0.73356 1 60276 60276 15.248 0 1 + 67703 18706 44972 45989 79156 79156 0.0858934797722668 VAQKNYFNI 9 Unmodified _VAQKNYFNI_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.793701171875 2 548.792924 1095.57129 0.54392 0.0002985 -0.14888 -8.1705E-05 0.39504 0.0002168 548.7928959989181 49.325 0.24395 48.954 48.799 49.043 -0.37172 27 11 3 0 0 0 0.013323 1 26495 26495 71.134 44.25 1 7074200 67704 5841 44973 45990 79157 79157 0.027331453345595946 VAQKNYFNI 9 Unmodified _VAQKNYFNI_ 0 0 0 nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25;nc|ENSG00000147364|Q8TCJ0|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 nc|ENSG00000147364|Q8TCJ0-3|FBXO25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7933349609375 2 548.792924 1095.57129 0.24694 0.00013552 0.78017 0.00042815 1.0271 0.00056367 548.793289153177 48.98 0.26054 48.936 48.81 49.07 -0.04369 25 12 3 0 0 0 0.022193 1 26448 26448 61.357 34.474 1 4411700 67705 5841 44973 45990 79158 79158 0.027331453345595946 VAQLDKPL 8 Unmodified _VAQLDKPL_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2660217285156 2 442.26601 882.517468 NaN NaN NaN NaN NaN NaN NaN 76.204 1 75.724 75.224 76.224 -0.47945 0 0 0 0.97444 1 41715 41715 0.79363 0 1 + 67706 24231 44974 45991 79159 79159 0.07150972902854846 VAQLLCRLR 9 Unmodified _VAQLLCRLR_ 0 0 0 REV__ENST00000296666.12_1_5:126853314-126859162:+|nuORF REV__ENST00000296666.12_1_5:126853314-126859162:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8869934082031 3 357.886699 1070.63827 1.8858 0.00067491 -0.78916 -0.00028243 1.0967 0.00039248 357.88651971706196 21.46 0.32154 18.726 18.595 18.917 -2.7348 102 30 4 0 0 0 0.32871 1 11426 11426 10.8 3.1906 1 42459000 + 67707 25274 44975 45992 79160 79160 0.10577477344668296 VAQLLCRLR 9 Unmodified _VAQLLCRLR_ 0 0 0 REV__ENST00000296666.12_1_5:126853314-126859162:+|nuORF REV__ENST00000296666.12_1_5:126853314-126859162:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.886699 1070.63827 0.00081112 2.9029E-07 0.37584 0.00013451 0.37666 0.0001348 357.8865469015706 19.028 0.30335 19.036 18.936 19.239 0.0074406 0.15504 0.0010607 NaN 10.8 32 18 3 NaN NaN NaN NaN 0 NaN NaN 0 836890 + 67708 25274 44975 45992 0.10577477344668296 VAQNVESWVKQ 11 Unmodified _VAQNVESWVKQ_ 0 0 0 REV__ENSG00000101193|ENST00000266069|GID8 REV__ENSG00000101193|ENST00000266069|GID8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.229736328125 3 429.894577 1286.6619 0.95938 0.00041243 0.92005 0.00039552 1.8794 0.00080796 430.2294327461263 36.196 0.35 32.004 31.802 32.152 -4.1928 30 20 2 0 0 0 0.57006 1 21052 21052 12.856 0.62836 1 22191000 + 67709 18144 44976 45993 79161 79161 0.03003569592169697 VAQQELDL 8 Unmodified _VAQQELDL_ 0 0 0 REV__nc|ENSG00000107263|Q13905|RAPGEF1 REV__nc|ENSG00000107263|Q13905|RAPGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2429504394531 2 458.242732 914.470912 0.75658 0.0003467 -0.63839 -0.00029254 0.11818 5.4157E-05 458.2420159463602 46.639 0.42675 46.639 46.412 46.839 0 50 19 4 0 0 0 0.44122 1 25464 25464 40.449 4.4044 1 6852100 + 67710 29557 44977 45994 79162 79162 0.010254882809135779 VAQSHSIDDF 10 Unmodified _VAQSHSIDDF_ 0 0 0 REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF REV__ENST00000474125.6_1_10:102771704-102781716:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.53271484375 3 373.508611 1117.504 -0.39072 -0.00014594 -0.56562 -0.00021126 -0.95634 -0.0003572 373.5083305728825 24.404 0.18904 24.404 24.301 24.49 0 15 9 2 0 0 0 0.23973 1 12448 12448 3.0723 2.11 1 632320 + 67711 23603 44978 45995 79163 79163 -0.05004929667052238 VAQSPLEAF 9 Unmodified _VAQSPLEAF_ 0 0 0 REV__nc|ENSG00000187605|O43151-2|TET3 REV__nc|ENSG00000187605|O43151-2|TET3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2528381347656 2 481.2531 960.491647 0.46016 0.00022145 0.16784 8.0773E-05 0.628 0.00030223 481.25305054149254 67.089 0.36518 67.089 66.952 67.317 0 20 15 2 0 0 0 0.2143 1 37438 37438 21.747 0 1 922680 + 67712 23644 44979 45996 79164 79164 0.009820786605587273 VAQSTRIIY 9 Unmodified _VAQSTRIIY_ 0 0 0 nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1 nc|ENSG00000111669|P60174-4|TPI1 nc|ENSG00000111669|P60174-4|TPI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.802001953125 2 525.800749 1049.58694 0.3455 0.00018166 -0.24532 -0.00012899 0.10017 5.2671E-05 525.8008062825292 40.111 0.38898 35.581 35.401 35.79 -4.5294 80 35 3 0 0 0 0.020676 2 23940 23803;23940 71.708 35.581 1 61874000 67713 2811 44980 45997 79165;79166 79166 0.06413431851638052 VAQTEPSI 8 Unmodified _VAQTEPSI_ 0 0 0 nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 nc|ENSG00000173889|Q8NDX5-2|PHC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7257690429688 2 422.724175 843.433798 NaN NaN NaN NaN NaN NaN NaN 56.955 1 56.955 56.455 57.455 0 0 0 0 0.97444 1 31688 31688 2.5775 0 1 67714 8373 44981 45998 79167 79167 0.005818167351435477 VAQVKEDI 8 Unmodified _VAQVKEDI_ 0 0 0 REV__ENSG00000100154|ENST00000397906|TTC28 REV__ENSG00000100154|ENST00000397906|TTC28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2537536621094 2 451.2531 900.491647 0.095628 4.3152E-05 0.82964 0.00037438 0.92527 0.00041753 451.2535313780653 71.544 0.23987 71.544 71.405 71.645 0 16 10 2 0 0 0 0.80044 1 39840 39840 6.3541 0 1 566500 + 67715 18021 44982 45999 79168 79168 0.03742078660570769 VAQVRHSF 8 Unmodified _VAQVRHSF_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2590637207031 2 472.259051 942.503549 0.50803 0.00023992 -1.3932 -0.00065797 -0.88521 -0.00041805 472.25832782621126 66.967 0.2906 66.967 66.795 67.085 0 29 13 3 0 0 0 0.80143 1 37411 37411 5.7604 0.52976 1 3023100 67716 5604 44983 46000 79169 79169 0.02999740194422884 VAQVRHSFI 9 Unmodified _VAQVRHSFI_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.802490234375 2 528.801083 1055.58761 -0.10047 -5.313E-05 2.8318 0.0014974 2.7313 0.0014443 528.8025260095266 56.352 0.24655 56.283 56.212 56.458 -0.068741 23 12 3 0 0 0 0.37804 1 30678 30678 13.508 13.508 1 3799200 67717 5604 44984 46001 79170 79170 0.06204271291335317 VAQYKSAP 8 Unmodified _VAQYKSAP_ 0 0 0 REV__ENSG00000006071|ENST00000389817|ABCC8 REV__ENSG00000006071|ENST00000389817|ABCC8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.5594177246094 2 432.23471 862.454868 1.2858 0.00055577 0.75447 0.00032611 2.0403 0.00088188 432.23530768918897 40.832 0.33624 36.303 36.13 36.466 -4.5294 32 20 2 0 0 0 8.7369 1 24369 24369 25.399 25.399 1 10874000 + 67718 16982 44985 46002 79171 79171 0.018138268346547193 VARAHREIFTY 11 Unmodified _VARAHREIFTY_ 0 0 0 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 ENSG00000126368|ENST00000246672|NR1D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.9140930175781 3 454.914083 1361.72042 0.084612 3.8491E-05 -0.26133 -0.00011888 -0.17671 -8.0389E-05 454.9139440141753 51.327 0.3338 51.273 51.087 51.421 -0.053871 56 16 4 0 0 0 0.66568 1 27825 27825 7.4771 0.85361 1 57065000 67719 3944 44986 46003 79172 79172 0.0540267095730087 VARAQPVR 8 Unmodified _VARAQPVR_ 0 0 0 REV__ENSG00000178685|ENST00000313028|PARP10 REV__ENSG00000178685|ENST00000313028|PARP10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2898254394531 2 448.774868 895.535184 0.68187 0.00030601 3.7481 0.0016821 4.43 0.0019881 448.7763235589589 62.067 0.23339 62.034 61.906 62.14 -0.032787 21 11 2 0 0 0 8.7369 1 33923 33923 2.5775 0 1 4362700 + 67720 23057 44987 46004 79173 79173 0.08323732948372253 VARKGGGL 8 Unmodified _VARKGGGL_ 0 0 0 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 ENSG00000181284|ENST00000323206|TMEM102 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2384948730469 2 379.237587 756.460622 NaN NaN NaN NaN NaN NaN NaN 64.055 1 64.055 63.555 64.555 0 0 0 0 0.97444 1 35722 35722 0.69038 0 1 67721 8962 44988 46005 79174 79174 0.07264970137009641 VARKRVRKKLE 11 Unmodified _VARKRVRKKLE_ 0 0 0 ENST00000262644.8_1_8:57872809-57872962:-|nuORF ENST00000262644.8_1_8:57872809-57872962:-|nuORF ENST00000262644.8_1_8:57872809-57872962:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1383.3134765625 1 1382.90666 1381.89939 -0.37048 -0.00051233 0.49255 0.00068115 0.12208 0.00016882 1383.9107557533546 39.494 0.29473 39.494 39.321 39.616 0 17 13 2 0 0 0 0.30605 1 21243 21243 0 0 1 3733500 67722 11271 44989 46006 79175 79175 0.22371180316099526 VARLQQRLN 9 Unmodified _VARLQQRLN_ 0 0 0 REV__ENST00000471033.5_1_2:197521653-197521863:+|nuORF REV__ENST00000471033.5_1_2:197521653-197521863:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.2372741699219 3 366.556118 1096.64652 0.79838 0.00029265 0.80997 0.0002969 1.6084 0.00058955 366.55637691594137 15.521 0.20547 12.994 12.893 13.098 -2.5273 88 48 2 0 0 0 0.21806 1 8009 8009 2.7352 0 1 4479800 + 67723 20704 44990 46007 79176 79176 0.1020674758565292 VARPLSTAL 9 Unmodified _VARPLSTAL_ 0 0 0 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2846069335938 2 464.284734 926.554916 -0.16898 -7.8456E-05 0.37374 0.00017352 0.20476 9.5067E-05 464.28491622133487 39.636 0.19457 39.339 39.197 39.392 -0.29716 15 8 2 0 0 0 0.07087 1 20923 20923 39.95 11.463 1 1853200 67724 282 44991 46008 79177 79177 0.08870064168456793 VARPLSTAL 9 Unmodified _VARPLSTAL_ 0 0 0 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 ENSG00000004779|ENST00000007516|NDUFAB1 MSMS AL20221201_MKP_PDAC_01 4 464.2847290039062 2 464.284734 926.554916 NaN NaN NaN NaN NaN NaN NaN 44.247 1 39.395 38.895 39.895 -4.852 0 0 0 0.098496 1 26989 26989 43.772 9.67 1 67725 282 44991 46008 79178 79178 0.08870064168456793 VARQAEELF 9 Unmodified _VARQAEELF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7830810546875 2 531.782556 1061.55056 0.61267 0.00032581 0.83053 0.00044166 1.4432 0.00076747 531.782943170718 43.125 0.41122 43.125 42.889 43.3 0 38 20 2 0 0 0 0.15471 1 23451 23451 27.629 12.791 1 19185000 67726 8367 44992 46009 79179 79179 0.022245549548870258 VARRPPPA 8 Unmodified _VARRPPPA_ 0 0 0 ENST00000459686.5_1_17:27944343-27944613:-|nuORF ENST00000459686.5_1_17:27944343-27944613:-|nuORF ENST00000459686.5_1_17:27944343-27944613:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2631225585938 2 432.264136 862.51372 NaN NaN NaN NaN NaN NaN NaN 32.279 1 32.309 31.809 32.809 0.029743 0 0 0 0.93066 1 16942 16942 14.582 5.2343 1 67727 13629 44993 46010 79180 79180 0.07696347919647906 VARRPPPA 8 Unmodified _VARRPPPA_ 0 0 0 ENST00000459686.5_1_17:27944343-27944613:-|nuORF ENST00000459686.5_1_17:27944343-27944613:-|nuORF ENST00000459686.5_1_17:27944343-27944613:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2649841308594 2 432.264136 862.51372 0.72339 0.00031269 -0.4864 -0.00021025 0.23698 0.00010244 432.26405626431006 36.258 0.3493 32.065 31.914 32.263 -4.1928 23 20 2 0 0 0 0.72953 1 21166 21166 14.582 5.2343 1 8586000 67728 13629 44993 46010 79181 79181 0.07696347919647906 VARRTLPA 8 Unmodified _VARRTLPA_ 0 0 0 ENST00000343218.9_2_5:146889424-146889604:-|nuORF ENST00000343218.9_2_5:146889424-146889604:-|nuORF ENST00000343218.9_2_5:146889424-146889604:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2767639160156 2 442.277244 882.539935 0.43443 0.00019214 -1.3386 -0.00059202 -0.90414 -0.00039988 442.2766752600238 38.563 0.16077 38.578 38.501 38.662 0.015079 13 7 2 0 0 0 0.77186 1 20528 20528 10.824 0 1 2076900 67729 11998 44994 46011 79182 79182 0.09396617091135795 VARRVLQAL 9 Unmodified _VARRVLQAL_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3318481445312 2 513.33255 1024.65055 0.12574 6.4548E-05 -0.25961 -0.00013327 -0.13387 -6.8718E-05 513.3324062147112 32.541 0.25722 32.571 32.44 32.698 0.029743 24 9 3 0 0 0 0.010877 1 17069 17069 77.984 25.716 1 7851300 67730 2310 44995 46012 79183 79183 0.13920837079353987 VARRVLQAL 9 Unmodified _VARRVLQAL_ 0 0 0 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 ENSG00000105372|ENST00000598742|RPS19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3330688476562 2 513.33255 1024.65055 0.86295 0.00044298 -0.1505 -7.7258E-05 0.71245 0.00036572 513.3324994851462 36.878 0.4387 32.595 32.388 32.827 -4.2835 70 26 4 0 0 0 0.03327 2 21602 21479;21602 53.576 15.424 1 67311000 67731 2310 44995 46012 79184;79185 79185 0.13920837079353987 VARTPRCI 8 Unmodified _VARTPRCI_ 0 0 0 REV__ENSG00000169047|ENST00000305123|IRS1 REV__ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2647399902344 2 458.263279 914.512005 0.23908 0.00010956 -0.58627 -0.00026867 -0.34719 -0.00015911 458.26291385070135 97.78 1.4728 97.537 97.022 98.495 -0.24277 185 60 4 0 0 0 0.80044 1 53660 53660 6.3541 0 1 291120000 + 67732 22368 44996 46013 79186 79186 0.05132970839383688 VARTPRCI 8 Unmodified _VARTPRCI_ 0 0 0 REV__ENSG00000169047|ENST00000305123|IRS1 REV__ENSG00000169047|ENST00000305123|IRS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 458.263279 914.512005 0.53027 0.000243 -0.33256 -0.0001524 0.19771 9.0605E-05 458.2630206778318 97.333 0.7702 97.333 96.913 97.683 0 -0.10191 0.00013513 NaN 6.3541 130 36 4 NaN NaN NaN NaN 0 NaN NaN 0 73491000 + 67733 22368 44996 46013 0.05132970839383688 VARTPRCI 8 Unmodified _VARTPRCI_ 0 0 0 REV__ENSG00000169047|ENST00000305123|IRS1 REV__ENSG00000169047|ENST00000305123|IRS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 458.263279 914.512005 0.23908 0.00010956 -0.58627 -0.00026867 -0.34719 -0.00015911 458.26291385070135 97.78 1.4728 97.537 97.022 98.495 -0.24277 0.10191 -9.7407E-05 NaN 6.3541 185 60 4 NaN NaN NaN NaN 0 NaN NaN 0 291120000 + 67734 22368 44996 46013 0.05132970839383688 VASAAGALVL 10 Unmodified _VASAAGALVL_ 0 0 0 ENST00000461111.1_1_1:988956-990358:+|nuORF ENST00000461111.1_1_1:988956-990358:+|nuORF ENST00000461111.1_1_1:988956-990358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2658996582031 2 436.26601 870.517468 0.31094 0.00013565 -0.13512 -5.8948E-05 0.17582 7.6704E-05 436.2659731811994 39.38 0.2644 39.38 39.224 39.488 0 22 12 3 0 0 0 0.19662 1 21078 21078 34.102 0 1 2141000 67735 13653 44997 46014 79187 79187 0.07702972902836791 VASAAGALVL 10 Unmodified _VASAAGALVL_ 0 0 0 ENST00000461111.1_1_1:988956-990358:+|nuORF ENST00000461111.1_1_1:988956-990358:+|nuORF ENST00000461111.1_1_1:988956-990358:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 436.26601 870.517468 -0.061736 -2.6933E-05 0.2356 0.00010278 0.17386 7.5851E-05 436.2661221297302 39.458 0.19358 39.16 39.091 39.285 -0.29716 -0.10992 0.00027001 NaN 34.102 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 752890 67736 13653 44997 46014 0.07702972902836791 VASANRRAAV 10 Unmodified _VASANRRAAV_ 0 0 0 REV__ENSG00000163162|ENST00000295317|RNF149 REV__ENSG00000163162|ENST00000295317|RNF149 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7948303222656 2 507.793789 1013.57303 0.43337 0.00022006 -1.9181 -0.00097402 -1.4848 -0.00075396 507.7948541248242 75.218 0.43034 74.741 74.538 74.968 -0.47714 92 21 6 0 0 0 0.33553 1 41103 41103 25.399 0 1 76958000 + 67737 21734 44998 46015 79188 79188 0.06678199143175334 VASCLGAL 8 Unmodified _VASCLGAL_ 0 0 0 ENST00000566802.5_1_16:74382766-74386124:-|nuORF;ENST00000429810.2_1_16:74382766-74394769:-|nuORF;ENST00000561920.5_1_16:70162832-70170105:+|nuORF ENST00000566802.5_1_16:74382766-74386124:-|nuORF ENST00000566802.5_1_16:74382766-74386124:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1990966796875 2 367.199282 732.384011 0.65849 0.0002418 -0.51885 -0.00019052 0.13964 5.1275E-05 367.199005135189 47.451 0.38242 47.412 47.157 47.54 -0.038643 32 17 3 0 0 0 0.80975 1 25527 25527 0.79363 0 1 3760400 67738 13223 44999 46016 79189 79189 0.007114105254800052 VASEPLPFV 9 Unmodified _VASEPLPFV_ 0 0 0 ENST00000582970.5_1_17:78317730-78317766:+|nuORF ENST00000582970.5_1_17:78317730-78317766:+|nuORF ENST00000582970.5_1_17:78317730-78317766:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 480.2068176269531 2 479.765843 957.517133 1.1112 0.00053311 -2.1239 -0.001019 -1.0127 -0.00048587 479.7652982649227 87.573 0.27586 81.397 81.163 81.439 -6.1757 15 14 2 0 0 0 0.16785 1 57655 57655 16.942 1.0951 1 5695100 67739 15579 45000 46017 79190 79190 0.03667553183004202 VASGMILVM 9 2 Oxidation (M) _VASGM(Oxidation (M))ILVM(Oxidation (M))_ VASGM(1)ILVM(1) VASGM(47)ILVM(47) 0 0 2 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7462158203125 2 476.745739 951.476925 0.68994 0.00032893 -0.61536 -0.00029337 0.074583 3.5557E-05 476.7454086503272 42.468 0.30655 42.468 42.299 42.605 0 28 14 3 0 0 0 0.045537 1 22990 22990 46.921 8.7697 1 5654000 67740 4654 45001 46018 79191 79191 841;842 -0.0007545280342355909 VASGMILVM 9 2 Oxidation (M) _VASGM(Oxidation (M))ILVM(Oxidation (M))_ VASGM(1)ILVM(1) VASGM(47)ILVM(47) 0 0 2 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7459106445312 2 476.745739 951.476925 0.88864 0.00042365 -0.44032 -0.00020992 0.44832 0.00021373 476.7457689734182 42.866 0.24755 42.866 42.718 42.966 0 28 12 3 0 0 0 0.045537 1 23224 23224 46.921 12.818 1 5400300 67741 4654 45001 46018 79192 79192 841;842 -0.0007545280342355909 VASGMILVM 9 2 Oxidation (M) _VASGM(Oxidation (M))ILVM(Oxidation (M))_ VASGM(1)ILVM(1) VASGM(47)ILVM(47) 0 0 2 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7464904785156 2 476.745739 951.476925 NaN NaN NaN NaN NaN NaN NaN 43.134 1 42.824 42.324 43.324 -0.31039 0 0 0 0.086291 1 22938 22938 46.921 16.696 1 67742 4654 45001 46018 79193 79193 841;842 -0.0007545280342355909 VASGMILVM 9 2 Oxidation (M) _VASGM(Oxidation (M))ILVM(Oxidation (M))_ 0 0 2 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 476.745739 951.476925 0.22055 0.00010515 -0.46922 -0.0002237 -0.24867 -0.00011855 476.7454946891564 42.696 0.2124 42.389 42.296 42.509 -0.30682 -0.039796 6.8742E-05 NaN 46.921 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4715300 67743 4654 45001 46018 841;842 -0.0007545280342355909 VASGMILVM 9 Unmodified _VASGMILVM_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.4961547851562 1 920.494372 919.487096 0.87283 0.00080344 1.2049 0.0011091 2.0777 0.0019125 920.4946031654936 85.947 0.40244 79.771 79.615 80.017 -6.1757 29 21 2 0 0 0 0.023164 2 56690 56560;56690 60.39 19.941 1 9309100 67744 4654 45001 46019 79194;79195 79195 0.024131549218054715 VASGSEVVLL 10 Unmodified _VASGSEVVLL_ 0 0 0 nc|ENSG00000256590|A0JD37|TRDV3 nc|ENSG00000256590|A0JD37|TRDV3 nc|ENSG00000256590|A0JD37|TRDV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2811584472656 2 487.281857 972.549162 -0.15506 -7.556E-05 1.2134 0.00059128 1.0584 0.00051572 487.2816253828093 40.715 0.24512 40.715 40.529 40.774 0 29 13 3 0 0 0 0.04925 1 21848 21848 58.679 2.5018 1 7613200 67745 16590 45002 46020 79196 79196 0.06178920866148019 VASLFYATTLF 11 Unmodified _VASLFYATTLF_ 0 0 0 ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.8314208984375 2 616.831714 1231.64888 0.46184 0.00028488 -0.78048 -0.00048143 -0.31864 -0.00019655 616.8318772874316 50.526 0.14656 50.526 50.456 50.603 0 12 6 3 0 0 0 0.67922 1 27896 27896 6.2058 0 1 996930 67746 9534 45003 46021 79197 79197 0.042317384800753644 VASLFYATTLF 11 Unmodified _VASLFYATTLF_ 0 0 0 ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 616.831714 1231.64888 0.43666 0.00026935 -1.4019 -0.00086476 -0.96527 -0.00059541 617.3319743357079 51.011 0.12296 50.597 50.538 50.661 -0.41351 -0.032 -0.00030355 NaN 6.2058 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 625780 67747 9534 45003 46021 0.042317384800753644 VASLFYATTLF 11 Unmodified _VASLFYATTLF_ 0 0 0 ENSG00000187080|ENST00000366480|OR2AK2;nc|ENSG00000187080|Q8NG84|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 ENSG00000187080|ENST00000366480|OR2AK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 616.831714 1231.64888 0.81317 0.00050159 -1.2166 -0.00075043 -0.40342 -0.00024884 616.831209543213 50.818 0.19396 50.764 50.648 50.842 -0.053871 0.13539 -7.4906E-05 NaN 6.2058 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1264700 67748 9534 45003 46021 0.042317384800753644 VASLPDDFLY 10 Unmodified _VASLPDDFLY_ 0 0 0 REV__nc|ENSG00000103222|P33527-6|ABCC1 REV__nc|ENSG00000103222|P33527-6|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2853393554688 2 570.284597 1138.55464 0.84068 0.00047943 0.25488 0.00014536 1.0956 0.00062478 570.2844953552403 73.116 0.79024 72.64 72.251 73.042 -0.47588 87 35 4 0 0 0 0.5905 1 39958 39958 11.64 0.81637 1 4526200 + 67749 18292 45004 46022 79198 79198 -0.009094003420386798 VASLPSLFS 9 Unmodified _VASLPSLFS_ 0 0 0 ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.5076293945312 1 920.50876 919.501483 0.064297 5.9186E-05 0.37862 0.00034852 0.44291 0.0004077 920.5090983841486 61.874 0.33704 61.874 61.707 62.044 0 36 14 3 0 0 0 0.06187 1 34451 34451 42.095 6.0504 1 5560100 67750 12232 45005 46023 79199 79199 0.03851266665958519 VASLPSLFS 9 Unmodified _VASLPSLFS_ 0 0 0 ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.5107421875 1 920.50876 919.501483 0.45286 0.00041686 -1.5733 -0.0014482 -1.1204 -0.0010313 920.5062286164604 62.477 0.39627 61.99 61.809 62.206 -0.48764 39 18 3 0 0 0 0.042911 1 33974 33974 48.346 14.243 1 6604000 67751 12232 45005 46023 79200 79200 0.03851266665958519 VASLPSLFS 9 Unmodified _VASLPSLFS_ 0 0 0 ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF ENST00000367279.8_1_1:202128675-202129107:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.7579345703125 2 460.758018 919.501483 0.54838 0.00025267 0.041865 1.929E-05 0.59024 0.00027196 460.7579213260648 62.454 0.2085 61.967 61.831 62.04 -0.48764 16 9 2 0 0 0 0.10734 1 34022 34022 32.305 3.8186 1 3331700 67752 12232 45005 46023 79201 79201 0.03851266665958519 VASMKKKG 8 Unmodified _VASMKKKG_ 0 0 0 REV__DSP|p.A2710V|1|0.16|ENSG00000096696|chr6:7585391-7585391|C/T|missense_variant REV__DSP|p.A2710V|1|0.16|ENSG00000096696|chr6:7585391-7585391|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.755126953125 2 424.754756 847.494958 -0.72158 -0.00030649 1.5176 0.00064462 0.79605 0.00033813 424.7553727350291 27.998 0.29973 27.998 27.721 28.021 0 21 15 2 0 0 0 0.81107 1 14381 14381 0 0 1 2092200 + 67753 16913 45006 46024 79202 79202 0.06511050233598326 VASMKKKG 8 Unmodified _VASMKKKG_ 0 0 0 REV__DSP|p.A2710V|1|0.16|ENSG00000096696|chr6:7585391-7585391|C/T|missense_variant REV__DSP|p.A2710V|1|0.16|ENSG00000096696|chr6:7585391-7585391|C/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.8877258300781 2 424.754756 847.494958 0.24912 0.00010581 1.2955 0.00055026 1.5446 0.00065608 424.7551948755209 27.746 0.75501 27.775 27.577 28.332 0.029564 54 31 2 0 0 0 8.7369 1 14495 14495 0 0 1 9534900 + 67754 16913 45006 46024 79203 79203 0.06511050233598326 VASPALSSL 9 Unmodified _VASPALSSL_ 0 0 0 REV__ENSG00000100625|ENST00000216513|SIX4 REV__ENSG00000100625|ENST00000216513|SIX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.4779052734375 1 844.47746 843.470183 -0.88617 -0.00074835 0.3799 0.00032081 -0.50627 -0.00042753 844.4779620303024 56.027 0.26241 55.541 55.372 55.634 -0.48554 16 12 2 0 0 0 0.06187 1 30376 30376 42.095 2.1372 1 3222700 + 67755 18093 45007 46025 79204 79204 0.04218693631867154 VASPPPPPSL 10 Unmodified _VASPPPPPSL_ 0 0 0 ENST00000372483.8_1_9:132388465-132394960:+|nuORF ENST00000372483.8_1_9:132388465-132394960:+|nuORF ENST00000372483.8_1_9:132388465-132394960:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.2335815429688 2 481.271293 960.528032 1.2823 0.00061716 0.5763 0.00027736 1.8586 0.00089451 481.27116241271165 41.021 0.37186 36.413 36.211 36.583 -4.6079 39 22 2 0 0 0 0.18632 1 24687 24687 13.906 7.1829 1 17910000 67756 12382 45008 46026 79205 79205 0.04618955557270965 VASQCWRF 8 Unmodified _VASQCWRF_ 0 0 0 REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7392272949219 2 498.739637 995.464721 -0.65218 -0.00032527 -0.11819 -5.8947E-05 -0.77038 -0.00038422 498.7395899615249 77.382 0.51872 76.9 76.603 77.121 -0.4826 55 24 3 0 0 0 0.80624 1 42466 42466 2.8892 0 1 4607600 + 67757 27141 45009 46027 79206 79206 -0.0331930843160535 VASQITSPI 9 Unmodified _VASQITSPI_ 0 0 0 nc|ENSG00000103460|O15405-2|TOX3;ENSG00000103460|ENST00000219746|TOX3 nc|ENSG00000103460|O15405-2|TOX3 nc|ENSG00000103460|O15405-2|TOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2617797851562 2 458.260925 914.507297 NaN NaN NaN NaN NaN NaN NaN 25.702 1 25.702 25.202 26.202 0 0 0 0 0.7243 1 13186 13186 8.5933 0.68312 1 67758 2141 45010 46028 79207 79207 0.04662365177614447 VASSALLSSF 10 Unmodified _VASSALLSSF_ 0 0 0 REV__nc|ENSG00000077238|P24394-3|IL4R REV__nc|ENSG00000077238|P24394-3|IL4R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.5237426757812 1 981.525138 980.517862 0.30058 0.00029503 -0.026375 -2.5888E-05 0.27421 0.00026914 981.5249814068043 94.002 0.36581 93.581 93.413 93.778 -0.42044 29 18 2 0 0 0 0.18021 1 51417 51417 36.127 3.3413 1 1597800 + 67759 17606 45011 46029 79208 79208 0.026823478320579852 VASSHLEQR 9 Unmodified _VASSHLEQR_ 0 0 0 ENST00000588534.1_1_19:2832263-2834847:+|nuORF;ENSG00000172006|ENST00000317243|ZNF554 ENST00000588534.1_1_19:2832263-2834847:+|nuORF ENST00000588534.1_1_19:2832263-2834847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7718505859375 2 513.76998 1025.52541 0.99638 0.00051191 1.5694 0.00080632 2.5658 0.0013182 513.7708269921176 37.971 0.79764 33.602 33.017 33.814 -4.3689 121 47 4 0 0 0 0.23158 1 22386 22386 20.454 20.454 1 98781000 67760 8171 45012 46030 79209 79209 0.013665001523349929 VASSVFITL 9 Unmodified _VASSVFITL_ 0 0 0 nc|ENSG00000162458|Q8WUP2-3|FBLIM1;ENSG00000162458|ENST00000375766|FBLIM1;nc|ENSG00000162458|Q8WUP2-2|FBLIM1 nc|ENSG00000162458|Q8WUP2-3|FBLIM1 nc|ENSG00000162458|Q8WUP2-3|FBLIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.7745971679688 2 468.773668 935.532783 1.0967 0.00051411 0.29251 0.00013712 1.3892 0.00065123 468.77369797019446 89.545 0.3441 83.37 83.182 83.526 -6.1757 30 18 2 0 0 0 0.052168 1 59074 59074 44.407 8.3628 1 13630000 67761 6864 45013 46031 79210 79210 0.06243839700039189 VASSVNTEF 9 Unmodified _VASSVNTEF_ 0 0 0 nc|ENSG00000168936|A0AVI4-2|TMEM129;ENSG00000168936|ENST00000382936|TMEM129 nc|ENSG00000168936|A0AVI4-2|TMEM129 nc|ENSG00000168936|A0AVI4-2|TMEM129 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 953.4608154296875 1 953.457453 952.450176 0.087874 8.3784E-05 0.37159 0.0003543 0.45947 0.00043808 953.4584844894521 38.916 0.22441 38.916 38.811 39.036 0 15 9 2 0 0 0 0.05447 1 20820 20820 43.858 13.222 1 1690700 67762 7818 45014 46032 79211 79211 -0.027951020987529773 VASTVAPMY 9 Oxidation (M) _VASTVAPM(Oxidation (M))Y_ VASTVAPM(1)Y VASTVAPM(57)Y 0 0 1 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7333679199219 2 477.733686 953.452819 -0.45884 -0.0002192 0.39543 0.00018891 -0.063409 -3.0292E-05 477.7337285793138 34.114 0.22952 34.114 33.926 34.156 0 17 11 2 0 0 0 0.027803 1 17931 17931 56.541 30.2 1 3034500 67763 9939 45015 46033 79212 79212 1607 -0.02576969965457465 VASVAAGTSF 10 Unmodified _VASVAAGTSF_ 0 0 0 ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ ENSG00000119227|ENST00000412723|PIGZ MULTI-MSMS AL20221201_MKP_PDAC_01 4 909.4662475585938 1 909.467623 908.460347 0.073403 6.6758E-05 0.37751 0.00034334 0.45092 0.00041009 909.4672410349166 55.955 0.37569 50.034 49.819 50.195 -5.9211 24 21 2 0 0 0 0.063761 1 35767 35767 54.774 0.94076 1 17985000 67764 3418 45016 46034 79213 79213 0.0024550562648073537 VASVFTPGFGE 11 Unmodified _VASVFTPGFGE_ 0 0 0 REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF REV__ENST00000477541.1_1_6:32916643-32917850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.77685546875 2 555.776939 1109.53933 0.50883 0.0002828 -0.46599 -0.00025899 0.042842 2.3811E-05 555.7765067255954 73.953 0.27363 73.997 73.864 74.137 0.043983 24 12 2 0 0 0 0.46578 1 40736 40736 18.146 2.2992 1 3346200 + 67765 24151 45017 46035 79214 79214 -0.011062671392210177 VATETVLAV 9 Unmodified _VATETVLAV_ 0 0 0 REV__nc|ENSG00000070371|P53675-2|CLTCL1 REV__nc|ENSG00000070371|P53675-2|CLTCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.763671875 2 451.7633 901.512048 0.71552 0.00032324 0.36434 0.0001646 1.0799 0.00048784 451.76338910352837 73.075 0.29041 73.075 72.883 73.174 0 20 12 2 0 0 0 0.46577 1 40651 40651 9.3474 0 1 1062900 + 67766 17470 45018 46036 79215 79215 0.057352493203779886 VATETVLAV 9 Unmodified _VATETVLAV_ 0 0 0 REV__nc|ENSG00000070371|P53675-2|CLTCL1 REV__nc|ENSG00000070371|P53675-2|CLTCL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 451.7633 901.512048 0.71552 0.00032324 0.36434 0.0001646 1.0799 0.00048784 451.76338910352837 73.075 0.29041 73.075 72.883 73.174 0 0 0 NaN 9.3474 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1062900 + 67767 17470 45018 46036 0.057352493203779886 VATFVGPRNRR 11 Unmodified _VATFVGPRNRR_ 0 0 0 REV__ENSG00000178226|ENST00000268281|PRSS36 REV__ENSG00000178226|ENST00000268281|PRSS36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.86962890625 2 636.86782 1271.72109 0.50673 0.00032272 0.23688 0.00015086 0.74361 0.00047358 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 249 65 6 0 0 0 0.6889 1 44609 44609 5.2969 0.066215 1 1280500000 + 67768 23030 45019 46037 79216 79216 0.09609510397035592 VATLFRPA 8 Unmodified _VATLFRPA_ 0 0 0 REV__ENST00000262878.4_1_20:35579996-35580110:-|nuORF REV__ENST00000262878.4_1_20:35579996-35580110:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7613830566406 2 437.760895 873.507237 1.2975 0.00056801 -0.29837 -0.00013061 0.99917 0.0004374 437.76063241546456 89.378 1.0154 83.203 82.636 83.651 -6.1757 106 56 2 0 0 0 0.50673 2 58733 58733;59007 34.102 3.8776 1 27058000 + 67769 25034 45020 46038 79217;79218 79217 0.06542409968267293 VATVVLLIGT 10 Unmodified _VATVVLLIGT_ 0 0 0 REV__ENSG00000117834|ENST00000438567|SLC5A9 REV__ENSG00000117834|ENST00000438567|SLC5A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.3194580078125 2 493.318243 984.621933 1.5784 0.00077866 0.58173 0.00028698 2.1601 0.0010656 493.31850762109406 106.36 1.4835 100.19 99.76 101.24 -6.1757 499 253 3 0 0 0 0.72607 8 71078 71078;71182;71289;71395;71502;71608;71714;71819 0 0 1 11421000 + 67770 19125 45021 46039 79219;79220;79221;79222;79223;79224;79225;79226 79219 0.1290067465959055 VATWESQFEEK 11 Unmodified _VATWESQFEEK_ 0 0 0 REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3206787109375 2 677.319699 1352.62485 0.60563 0.0004102 -0.072612 -4.9182E-05 0.53301 0.00036102 677.3195317852503 47.571 0.20259 47.219 47.125 47.328 -0.3526 16 9 2 0 0 0 0.5229 1 25504 25504 15.248 0 1 3659800 + 67771 26842 45022 46040 79227 79227 -0.03736146744222424 VATWESQFEEK 11 Unmodified _VATWESQFEEK_ 0 0 0 REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF REV__ENST00000421315.1_1_6:74000735-74000831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3204956054688 2 677.319699 1352.62485 -0.02722 -1.8436E-05 -0.46623 -0.00031579 -0.49345 -0.00033422 677.3194293091694 51.27 0.24952 50.857 50.68 50.93 -0.41351 31 12 3 0 0 0 0.5229 1 27586 27586 15.248 3.7538 1 3221900 + 67772 26842 45022 46040 79228 79228 -0.03736146744222424 VATYIQEPNED 11 Unmodified _VATYIQEPNED_ 0 0 0 nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3 nc|ENSG00000196338|Q9NZ94-3|NLGN3 nc|ENSG00000196338|Q9NZ94-3|NLGN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.7955322265625 2 639.796057 1277.57756 -0.46449 -0.00029718 -0.18103 -0.00011582 -0.64552 -0.000413 639.7957390275408 32.57 0.4311 32.441 32.309 32.74 -0.12915 24 18 2 0 0 0 0.65108 1 17073 17073 8.7454 0 1 1731300 67773 9800 45023 46041 79229 79229 -0.05012426015264282 VAVEQPAW 8 Unmodified _VAVEQPAW_ 0 0 0 REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF REV__ENST00000449997.1_1_7:44097442-44098349:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2354736328125 2 450.23471 898.454868 NaN NaN NaN NaN NaN NaN NaN 78.882 1 78.397 77.897 78.897 -0.48596 0 0 0 0.95201 1 43204 43204 10.183 0 1 + 67774 27193 45024 46042 79230 79230 0.001578268346634104 VAVEVVTTM 9 Unmodified _VAVEVVTTM_ 0 0 0 ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O ENSG00000175931|ENST00000319380|UBE2O MULTI-SECPEP AL20221201_MKP_PDAC_01 4 474.234619140625 2 474.757161 947.499769 1.4316 0.00067969 -0.7022 -0.00033337 0.72945 0.00034631 474.75712712568253 64.405 0.32632 58.23 58.036 58.363 -6.1757 22 17 2 0 0 0 0.11012 1 41679 41679 28.487 17.372 1 8344000 67775 8551 45025 46043 79231 79231 0.023918895856922973 VAVFLSVAL 9 Unmodified _VAVFLSVAL_ 0 0 0 ENSG00000100600|ENST00000334869|LGMN;ENST00000557694.1_1_14:93182479-93199131:-|nuORF;nc|ENSG00000100600|Q99538-3|LGMN;nc|ENSG00000100600|Q99538-2|LGMN;ENST00000557315.1_1_14:93198984-93199131:-|nuORF ENSG00000100600|ENST00000334869|LGMN ENSG00000100600|ENST00000334869|LGMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 918.5670166015625 1 918.565881 917.558604 1.9648 0.0018048 -2.3376 -0.0021472 -0.37279 -0.00034243 918.5640468721155 100.29 0.10965 100.25 100.18 100.29 -0.036301 7 3 3 0 0 0 0.045537 1 55708 55708 46.921 1.1709 1 17819000 67776 1850 45026 46044 79232 79232 0.09652733942323266 VAVHREPPF 9 Unmodified _VAVHREPPF_ 0 0 0 REV__ENST00000585812.5_1_17:59456443-59469483:+|nuORF REV__ENST00000585812.5_1_17:59456443-59469483:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2907104492188 2 526.287808 1050.56106 0.26228 0.00013804 -0.055074 -2.8985E-05 0.20721 0.00010905 526.2876599712565 56.104 0.76153 50.127 49.614 50.375 -5.9769 145 44 5 0 0 0 0.39863 1 35558 35558 12.532 0 1 448260000 + 67777 29103 45027 46045 79233 79233 0.03780582399986088 VAVKEKEKDT 10 Unmodified _VAVKEKEKDT_ 0 0 0 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 REV__nc|ENSG00000067798|Q8IVL0-3|NAV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.82080078125 2 573.821878 1145.6292 0.39951 0.00022925 -0.080267 -4.6059E-05 0.31924 0.00018319 573.8220368734933 45.921 0.29822 45.893 45.745 46.043 -0.028011 45 13 4 0 0 0 0.34249 1 24662 24662 24.991 2.2547 1 16013000 + 67778 17425 45028 46046 79234 79234 0.062213624693413294 VAVKGPVQ 8 Unmodified _VAVKGPVQ_ 0 0 0 ENSG00000106178|ENST00000222902|CCL24 ENSG00000106178|ENST00000222902|CCL24 ENSG00000106178|ENST00000222902|CCL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2490234375 2 399.247621 796.480688 0.24667 9.8482E-05 1.4329 0.00057207 1.6795 0.00067055 399.2483146819215 23.273 0.31382 20.494 20.424 20.738 -2.7784 32 24 2 0 0 0 0.61462 1 12626 12626 24.674 0 1 4019800 67779 2405 45029 46047 79235 79235 0.07430721076957525 VAVLDPLGL 9 Unmodified _VAVLDPLGL_ 0 0 0 REV__ENSG00000261150|ENST00000615648|EPPK1 REV__ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7766723632812 2 448.776211 895.537869 0.68187 0.00030601 0.75626 0.00033939 1.4381 0.0006454 448.7763235589589 62.067 0.23339 62.034 61.906 62.14 -0.032787 21 11 2 0 0 0 0.3554 1 33911 33911 14.582 1.0738 1 4362700 + 67780 24580 45030 46048 79236 79236 0.08592143562668753 VAVMDVVVMT 10 Unmodified _VAVMDVVVMT_ 0 0 0 REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF REV__ENST00000444886.1_1_9:128358610-128358904:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2771606445312 2 532.279946 1062.54534 0.94921 0.00050524 -0.028516 -1.5179E-05 0.92069 0.00049007 532.2794491902232 38.15 0.44331 33.781 33.473 33.916 -4.3689 59 26 3 0 0 0 0.38092 1 22376 22376 22.736 0 1 33979000 + 67781 27127 45031 46049 79237 79237 0.016567917764405138 VAVRTTDF 8 Unmodified _VAVRTTDF_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.7443237304688 2 454.745442 907.476331 0.60249 0.00027398 -2.8674 -0.0013039 -2.2649 -0.0010299 454.7443236413601 50.118 0.22272 50.118 49.986 50.209 0 16 10 2 0 0 0 0.5284 1 27622 27622 32.117 1.8922 1 1799100 + 67782 21753 45032 46050 79238 79238 0.01889211863374385 VAVTVDLL 8 Unmodified _VAVTVDLL_ 0 0 0 REV__VIT|p.A189D|1|0.18|ENSG00000205221|chr2:36767172-36767172|C/A|missense_variant REV__VIT|p.A189D|1|0.18|ENSG00000205221|chr2:36767172-36767172|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2203674316406 2 415.255111 828.49567 NaN NaN NaN NaN NaN NaN NaN 47.458 1 47.458 46.958 47.958 0 0 0 0 0.97444 1 25982 25982 2.8892 0 1 + 67783 30134 45033 46051 79239 79239 0.07456168154271836 VAVVMAEE 8 Unmodified _VAVVMAEE_ 0 0 0 REV__ENSG00000168005|ENST00000294244|SPINDOC REV__ENSG00000168005|ENST00000294244|SPINDOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.5816040039062 1 847.422981 846.415705 0.34414 0.00029164 -2.8798 -0.0024404 -2.5357 -0.0021488 847.4208304899679 99.109 0.16678 92.933 92.807 92.974 -6.1757 12 9 2 0 0 0 0.21786 1 65890 65890 67.035 10.494 1 24014000 + 67784 22276 45034 46052 79240 79240 -0.013646415112134491 VAVVYRAP 8 Unmodified _VAVVYRAP_ 0 0 0 REV__ENSG00000165349|ENST00000374299|SLC7A3 REV__ENSG00000165349|ENST00000374299|SLC7A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.5146484375 1 874.514514 873.507237 0.99198 0.0008675 -0.61568 -0.00053842 0.3763 0.00032908 874.5140233906603 66.809 0.31426 66.827 66.693 67.007 0.018028 25 14 2 0 0 0 0.61462 1 36623 36623 24.674 3.8027 1 6725300 + 67785 22006 45035 46053 79241 79241 0.06542409968267293 VAVWFCRF 8 Unmodified _VAVWFCRF_ 0 0 0 REV__ENST00000533616.5_1_11:129939734-129939815:+|nuORF REV__ENST00000533616.5_1_11:129939734-129939815:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.7913818359375 2 514.262748 1026.51094 -0.19597 -0.00010078 0.80284 0.00041287 0.60687 0.00031209 514.2630396649968 78.552 0.38091 78.066 77.942 78.323 -0.48595 23 15 2 0 0 0 8.7369 1 43155 43155 2.5775 0 1 455570 + 67786 28484 45036 46054 79242 79242 -0.0012524352951004403 VAWNPSPA 8 Unmodified _VAWNPSPA_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 841.4201049804688 1 841.420279 840.413003 -0.10356 -8.7137E-05 -0.28333 -0.0002384 -0.38689 -0.00032554 841.4196898124757 53.643 0.38575 53.58 53.481 53.866 -0.063423 60 25 3 0 0 0 0.61462 1 29191 29191 24.674 5.2349 1 29393000 67787 10837 45037 46055 79243 79243 -0.013587288538701614 VAWNPSPA 8 Unmodified _VAWNPSPA_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4204711914062 1 841.420279 840.413003 0.54161 0.00045572 0.32236 0.00027124 0.86398 0.00072697 841.4202442663975 53.262 0.342 47.458 47.334 47.676 -5.8042 32 21 2 0 0 0 0.61462 1 33748 33748 24.674 5.2349 1 22807000 67788 10837 45037 46055 79244 79244 -0.013587288538701614 VAWNPSPA 8 Unmodified _VAWNPSPA_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4208984375 1 841.420279 840.413003 0.87092 0.00073281 -0.47294 -0.00039794 0.39798 0.00033487 841.4198826053466 59.766 0.72342 53.651 53.452 54.175 -6.1147 92 39 3 0 0 0 0.61462 3 38448 38448;38589;38717 24.674 24.674 1 92923000 67789 10837 45037 46055 79245;79246;79247 79245 -0.013587288538701614 VAWNPSPA 8 Unmodified _VAWNPSPA_ 0 0 0 nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 nc|ENSG00000261236|Q14137-2|BOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4213256835938 1 841.420279 840.413003 0.95952 0.00080736 0.54198 0.00045603 1.5015 0.0012634 841.4208001307863 63.546 0.93544 57.37 57 57.935 -6.1757 94 52 2 0 0 0 0.61462 3 40874 40874;41293;41451 24.674 6.5389 1 17875000 67790 10837 45037 46055 79248;79249;79250 79248 -0.013587288538701614 VAWVNYATIR 10 Unmodified _VAWVNYATIR_ 0 0 0 REV__ENSG00000226761|ENST00000533467|TAS2R46 REV__ENSG00000226761|ENST00000533467|TAS2R46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2207336425781 3 398.220624 1191.64004 0.28993 0.00011546 -0.18979 -7.5577E-05 0.10014 3.9878E-05 398.22051413975043 40.675 0.20826 40.68 40.571 40.779 0.0050583 14 9 2 0 0 0 0.69848 1 21682 21682 3.0723 0.077021 1 3138800 + 67791 24393 45038 46056 79251 79251 0.05188809634273639 VAWWPYLLC 9 Unmodified _VAWWPYLLC_ 0 0 0 REV__ENST00000324695.8_1_2:234873347-234879062:+|nuORF REV__ENST00000324695.8_1_2:234873347-234879062:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1965026855469 3 384.196651 1149.56812 -0.54786 -0.00021049 0.34279 0.0001317 -0.20507 -7.8786E-05 384.1967887381773 15.622 0.15166 15.608 15.53 15.682 -0.014067 78 54 2 0 0 0 0.61256 1 7645 7645 0.26902 0 1 1148200 + 67792 25537 45039 46057 79252 79252 -0.0006782104378544318 VAYDTLPIV 9 Unmodified _VAYDTLPIV_ 0 0 0 ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF;PLOD3|p.Q293Gfs*66|1|0.06|ENSG00000106397|chr7:101212844-101212845|-/CC|frameshift_variant ENSG00000106397|ENST00000223127|PLOD3 ENSG00000106397|ENST00000223127|PLOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2788696289062 2 495.778951 989.543348 0.64324 0.00031891 -1.0042 -0.00049786 -0.36096 -0.00017896 495.779194030177 75.774 0.41665 75.297 75.041 75.457 -0.47714 29 18 2 0 0 0 0.54444 1 41422 41422 4.756 0.42677 1 1388200 67793 2424 45040 46058 79253 79253 0.04815822354498778 VAYITTTA 8 Unmodified _VAYITTTA_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2278442382812 2 420.229094 838.443634 0.026798 1.1261E-05 -1.5067 -0.00063315 -1.4799 -0.00062189 420.22821718160395 78.075 0.4136 78.075 77.878 78.291 0 47 17 4 0 0 0 0.81107 2 43346 43346;43444 0 0 1 3416500 + 67794 21196 45041 46059 79254;79255 79254 0.01795004740506556 VAYKDQDIETV 11 Unmodified _VAYKDQDIETV_ 0 0 0 REV__ENSG00000196924|ENST00000369850|FLNA REV__ENSG00000196924|ENST00000369850|FLNA MSMS AL20221201_MKP_PDAC_01 4 640.8209838867188 2 640.822075 1279.6296 NaN NaN NaN NaN NaN NaN NaN 19.826 1 17.169 16.669 17.669 -2.6564 0 0 0 0.9372 1 10530 10530 4.5289 0.58447 1 + 67795 23882 45042 46060 79256 79256 0.0009673739848494733 VAYKEGNKF 9 Unmodified _VAYKEGNKF_ 0 0 0 REV__ENSG00000065485|ENST00000316218|PDIA5 REV__ENSG00000065485|ENST00000316218|PDIA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.3153076171875 2 528.279649 1054.54475 NaN NaN NaN NaN NaN NaN NaN 65.218 1 64.734 64.234 65.234 -0.48428 0 0 0 0.70111 1 35589 35589 9.3474 0 1 + 67796 17377 45043 46061 79257 79257 0.0196545644323578 VAYMKQSIL 9 Unmodified _VAYMKQSIL_ 0 0 0 REV__HDAC5|p.P770L|1|0.19|ENSG00000108840|chr17:44083851-44083851|G/A|missense_variant REV__HDAC5|p.P770L|1|0.19|ENSG00000108840|chr17:44083851-44083851|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.5332641601562 3 351.531811 1051.5736 NaN NaN NaN NaN NaN NaN NaN 24.461 1 21.634 21.134 22.134 -2.8273 0 0 0 0.6557 1 13320 13320 7.1017 0 1 + 67797 29358 45044 46062 79258 79258 0.04987857748028546 VAYPTLVQI 9 Unmodified _VAYPTLVQI_ 0 0 0 REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2933044433594 2 502.294768 1002.57498 1.2969 0.00065141 -0.986 -0.00049526 0.31087 0.00015615 502.2950051398804 95.407 0.60316 89.231 88.748 89.351 -6.1757 43 33 2 0 0 0 0.12841 1 63036 63036 30.225 1.738 1 15450000 + 67798 19756 45045 46063 79259 79259 0.07379815108413368 VAYQLKVDYFL 11 Unmodified _VAYQLKVDYFL_ 0 0 0 REV__ENSG00000197892|ENST00000524189|KIF13B REV__ENSG00000197892|ENST00000524189|KIF13B MSMS AL20221201_MKP_PDAC_01 4 453.5824279785156 3 453.583339 1357.72819 NaN NaN NaN NaN NaN NaN NaN 43.247 1 38.482 37.982 38.982 -4.7648 0 0 0 0.92234 1 26246 26246 2.8433 0 1 + 67799 23965 45046 46064 79260 79260 0.06363385434224256 VAYYITTR 8 Unmodified _VAYYITTR_ 0 0 0 nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2063598632812 2 493.768917 985.523281 0.85113 0.00042026 -0.0016865 -8.3275E-07 0.84945 0.00041943 493.7691915030229 64.213 0.18765 63.728 63.613 63.8 -0.48512 11 8 2 0 0 0 8.7369 1 35050 35050 2.5775 0 1 337530 67800 10216 45047 46065 79261 79261 0.0299407141451411 VCAAQGGYRSN 11 Unmodified _VCAAQGGYRSN_ 0 0 0 REV__ENST00000455577.6_1_15:40531750-40531930:+|nuORF REV__ENST00000455577.6_1_15:40531750-40531930:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8425598144531 3 375.841707 1124.50329 0.14955 5.6208E-05 1.9874 0.00074693 2.1369 0.00080314 375.8425923873969 69.289 0.29728 69.289 69.103 69.4 0 19 12 2 0 0 0 0.7326 1 38576 38576 0.40827 0 1 1040700 + 67801 27244 45048 46066 79262 79262 -0.05398047587732435 VCAGDEEWF 9 Unmodified _VCAGDEEWF_ 0 0 0 REV__ENST00000476881.2_1_7:100174203-100174533:-|nuORF REV__ENST00000476881.2_1_7:100174203-100174533:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.4766540527344 3 352.476142 1054.4066 0.50701 0.00017871 0.2508 8.8402E-05 0.75782 0.00026711 352.4762064304133 82.933 0.42811 82.436 82.244 82.672 -0.49751 34 17 3 0 0 0 0.61256 1 45501 45501 0.26902 0 1 2563200 + 67802 27601 45049 46067 79263 79263 -0.1184303486754743 VCCMRWCI 8 Unmodified _VCCMRWCI_ 0 0 0 REV__chr6:32949375-32949611|152|15.61|0.0|20.57|-|0|None,HLA-DMA|1 REV__chr6:32949375-32949611|152|15.61|0.0|20.57|-|0|None,HLA-DMA|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.212890625 2 507.213029 1012.4115 0.40679 0.00020633 -1.3626 -0.00069114 -0.95584 -0.00048481 507.2123246846092 79.557 0.21968 79.557 79.418 79.638 0 14 8 2 0 0 0 0.80676 1 44184 44184 2.5775 0.73324 1 419640 + 67803 16813 45050 46068 79264 79264 -0.09420468801795323 VCDLFPSYCH 10 Unmodified _VCDLFPSYCH_ 0 0 0 nc|ENSG00000114646|O95196-3|CSPG5;ENSG00000114646|ENST00000264723|CSPG5;nc|ENSG00000114646|O95196|CSPG5 nc|ENSG00000114646|O95196-3|CSPG5 nc|ENSG00000114646|O95196-3|CSPG5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2035827636719 3 395.168544 1182.4838 NaN NaN NaN NaN NaN NaN NaN 65.871 1 65.871 65.371 66.371 0 0 0 0 0.99897 1 36738 36738 0.77653 0 1 67804 3051 45051 46069 79265 79265 -0.10014139922873255 VCDQDQDCDDG 11 Unmodified _VCDQDQDCDDG_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.6924438476562 2 606.692617 1211.37068 NaN NaN NaN NaN NaN NaN NaN 15.103 1 15.103 14.603 15.603 0 0 0 0 0.9435 1 7245 7245 0 0 1 67805 1325 45052 46070 79266 79266 -0.2265490489739932 VCDRLGAALAF 11 Unmodified _VCDRLGAALAF_ 0 0 0 REV__ENST00000462059.1_1_8:144660029-144660488:-|nuORF REV__ENST00000462059.1_1_8:144660029-144660488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2947998046875 2 568.300059 1134.58556 0.49987 0.00028408 -3.5679 -0.0020276 -3.068 -0.0017435 568.2977431132703 56.67 0.24309 56.601 56.517 56.76 -0.068741 20 11 2 0 0 0 0.5229 1 30819 30819 15.248 0.41021 1 6986000 + 67806 20913 45053 46071 79267 79267 0.023654744911937087 VCEAPAMV 8 Unmodified _VCEAPAMV_ 0 0 0 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 819.3720703125 1 819.373923 818.366646 1.7725 0.0014523 -1.7816 -0.0014598 -0.0091712 -7.5147E-06 819.3725147435568 104.69 0.069893 98.513 98.457 98.527 -6.1757 5 3 2 0 0 0 0.80975 1 70097 70097 0.79363 0 1 2985500 67807 9554 45054 46072 79268 79268 -0.04980253071823881 VCEKLKQIEG 10 Unmodified _VCEKLKQIEG_ 0 0 0 nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220 nc|ENSG00000134313|Q9ULH0-2|KIDINS220 nc|ENSG00000134313|Q9ULH0-2|KIDINS220 MSMS AL20221201_MKP_PDAC_01 4 573.815185546875 2 573.812999 1145.61144 NaN NaN NaN NaN NaN NaN NaN 26.054 1 23.103 22.603 23.603 -2.9511 0 0 0 0.68942 1 14316 14316 17.113 1.2657 1 67808 4589 45055 46073 79269 79269 0.044463239428068846 VCFLIKYIPY 10 Unmodified _VCFLIKYIPY_ 0 0 0 REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1 REV__nc|ENSG00000188394|Q9Y3P9-4|RABGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8489379882812 2 629.848853 1257.68315 0.10328 6.5052E-05 0.7182 0.00045236 0.82148 0.00051741 629.8491594140332 53.01 0.36185 52.558 52.381 52.742 -0.45173 26 18 2 0 0 0 0.69064 1 28674 28674 3.9444 0 1 1162000 + 67809 17059 45056 46074 79270 79270 0.06461863367348997 VCFLSCLDVWN 11 Unmodified _VCFLSCLDVWN_ 0 0 0 nc|ENSG00000254685|O14772|FPGT;ENSG00000254685|ENST00000370898|FPGT;nc|ENSG00000254685|O14772-2|FPGT nc|ENSG00000254685|O14772|FPGT nc|ENSG00000254685|O14772|FPGT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.797119140625 2 649.799034 1297.58352 NaN NaN NaN NaN NaN NaN NaN 70.043 1 69.564 69.064 70.064 -0.47903 0 0 0 0.58065 1 38298 38298 21.537 4.4241 1 67810 10780 45057 46075 79271 79271 -0.053373223089010935 VCFQFIHRL 9 Unmodified _VCFQFIHRL_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.2106628417969 3 388.211183 1161.61172 -0.53936 -0.00020939 2.8532 0.0011077 2.3139 0.00089827 388.212402459268 18.749 0.082951 18.749 18.703 18.786 0 12 7 2 0 0 0 0.55775 1 9339 9339 2.2828 0 1 417130 + 67811 17944 45058 46076 79272 79272 0.037377884533270844 VCFSYRNNF 9 Unmodified _VCFSYRNNF_ 0 0 0 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8431396484375 3 383.843048 1148.50731 1.3368 0.00051312 -0.45554 -0.00017486 0.88126 0.00033827 383.84300379029025 69.086 1.7348 62.91 62.028 63.763 -6.1757 121 97 2 0 0 0 0.49272 1 44818 44818 4.897 0 1 39528000 67812 458 45059 46077 79273 79273 -0.060999580940460874 VCHQIRYL 8 Unmodified _VCHQIRYL_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.275634765625 2 516.276386 1030.53822 NaN NaN NaN NaN NaN NaN NaN 86.854 1 86.854 86.354 87.354 0 0 0 0 0.97444 1 48102 48102 2.8892 0 1 67813 4081 45060 46078 79274 79274 0.024172400108682268 VCIFNFFYF 9 Unmodified _VCIFNFFYF_ 0 0 0 ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF ENST00000430246.6_1_14:21702260-21731069:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2854614257812 2 600.283346 1198.55214 0.52738 0.00031658 0.63687 0.0003823 1.1643 0.00069888 600.2836965196044 85.073 0.42593 84.571 84.365 84.791 -0.5015 56 21 3 0 0 0 0.46577 1 46490 46490 9.3474 0.75416 1 2837600 67814 13234 45061 46079 79275 79275 -0.0391952728070919 VCKAKAAI 8 Unmodified _VCKAKAAI_ 0 0 0 ENST00000486986.6_1_1:151752280-151755498:-|nuORF;ENSG00000182134|ENST00000368824|TDRKH ENST00000486986.6_1_1:151752280-151755498:-|nuORF ENST00000486986.6_1_1:151752280-151755498:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.9089660644531 2 402.244024 802.473494 NaN NaN NaN NaN NaN NaN NaN 70.4 1 69.921 69.421 70.421 -0.47903 0 0 0 0.97444 1 38503 38503 5.2307 2.6532 1 67815 9020 45062 46080 79276 79276 0.06435665204867291 VCKRWRQEW 9 Unmodified _VCKRWRQEW_ 0 0 0 ENST00000443615.1_1_1:21112682-21113015:-|nuORF ENST00000443615.1_1_1:21112682-21113015:-|nuORF ENST00000443615.1_1_1:21112682-21113015:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880004882812 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 59.877 1 59.877 59.377 60.377 0 0 0 0 0.85798 1 33381 33381 0.23584 0 1 67816 13426 45063 46081 79277 79277 0.01190790225246019 VCLERLGSL 9 Unmodified _VCLERLGSL_ 0 0 0 nc|ENSG00000266412|Q13772-4|NCOA4;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 nc|ENSG00000266412|Q13772-4|NCOA4 MSMS AL20221201_MKP_PDAC_01 4 495.2773132324219 2 495.276052 988.537551 NaN NaN NaN NaN NaN NaN NaN 44.53 1 39.678 39.178 40.178 -4.852 0 0 0 0.41346 1 27197 27197 19.257 1.122 1 67817 16599 45064 46082 79278 79278 0.042824005711622704 VCLLLLCP 8 Unmodified _VCLLLLCP_ 0 0 0 ENSG00000204866|ENST00000377693|IGFL2;nc|ENSG00000204866|Q6UWQ7-2|IGFL2 ENSG00000204866|ENST00000377693|IGFL2 ENSG00000204866|ENST00000377693|IGFL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2515869140625 2 437.25046 872.486367 0.58065 0.00025389 2.1239 0.00092869 2.7046 0.0011826 437.2511494124988 67.936 0.24727 67.962 67.794 68.042 0.025154 24 11 3 0 0 0 0.80624 1 37309 37309 2.8892 0 1 2872900 67818 10335 45065 46083 79279 79279 0.045023602727496836 VCLTVSHTSVC 11 Unmodified _VCLTVSHTSVC_ 0 0 0 ENSG00000164129|ENST00000338566|NPY5R ENSG00000164129|ENST00000338566|NPY5R ENSG00000164129|ENST00000338566|NPY5R MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7689819335938 2 574.775559 1147.53657 1.2511 0.0007191 0.7251 0.00041677 1.9762 0.0011359 574.7752746964802 53.682 0.5771 47.878 47.659 48.236 -5.8042 84 35 4 0 0 0 0.46578 1 34098 34098 18.146 2.8979 1 149280000 67819 7145 45066 46084 79280 79280 -0.03130181860046832 VCMCVYLFEY 10 Unmodified _VCMCVYLFEY_ 0 0 0 REV__ENST00000280258.5_1_11:86519997-86520249:+|nuORF REV__ENST00000280258.5_1_11:86519997-86520249:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.2727661132812 2 635.271264 1268.52797 -0.645 -0.00040975 0.63375 0.0004026 -0.011254 -7.1493E-06 635.2720208281629 77.063 0.26398 76.583 76.437 76.701 -0.47945 22 11 3 0 0 0 0.70951 1 42169 42169 1.8442 0 1 879050 + 67820 25187 45067 46085 79281 79281 -0.09554871820887456 VCNTLMNVCM 10 Unmodified _VCNTLMNVCM_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.4957580566406 3 376.495386 1126.46433 0.48195 0.00018145 0.48712 0.0001834 0.96907 0.00036485 376.4954990667449 86.633 0.36172 86.13 85.906 86.267 -0.50318 31 14 3 0 0 0 0.71535 1 47356 47356 0.50596 0 1 1173300 67821 5656 45068 46086 79282 79282 -0.09384555529641148 VCPCTFHRTTF 11 Unmodified _VCPCTFHRTTF_ 0 0 0 ENST00000469599.6_1_Y:21867883-21868626:-|nuORF ENST00000469599.6_1_Y:21867883-21868626:-|nuORF ENST00000469599.6_1_Y:21867883-21868626:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.300537109375 2 656.302275 1310.59 0.65945 0.0004328 -1.1261 -0.00073903 -0.46661 -0.00030623 656.3011150399008 69.377 0.331 63.201 63.029 63.36 -6.1757 25 17 2 0 0 0 0.39949 1 45309 45309 21.537 3.3906 1 17854000 67822 13839 45069 46087 79283 79283 -0.0528738435757532 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1795043945312 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 13.631 1 13.631 13.131 14.131 0 0 0 0 0.94337 1 6451 6451 0.094841 0 1 67823 14767 45070 46088 79284 79284 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1790466308594 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 1.4392 1 1.366 0.86596 1.866 -0.07329 0 0 0 0.94337 1 720 720 0.094841 0 1 67824 14767 45070 46088 79285 79285 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.179931640625 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 5.9123 1 5.9134 5.4134 6.4134 0.0010915 0 0 0 0.94337 1 2976 2976 0.094841 0 1 67825 14767 45070 46088 79286 79286 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1797180175781 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 8.7458 1 8.7634 8.2634 9.2634 0.017581 0 0 0 0.94337 1 4348 4348 0.094841 0 1 67826 14767 45070 46088 79287 79287 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1796264648438 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 8.944 1 8.9616 8.4616 9.4616 0.017581 0 0 0 0.94337 1 4445 4445 0.094841 0 1 67827 14767 45070 46088 79288 79288 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1788635253906 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 9.8137 1 9.8313 9.3313 10.331 0.017581 0 0 0 0.94337 1 4862 4862 0.094841 0 1 67828 14767 45070 46088 79289 79289 -0.07375006017650776 VCPGCECQPRL 11 Unmodified _VCPGCECQPRL_ 0 0 0 ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF ENST00000523376.5_1_11:14926852-14929496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8559265136719 3 402.180566 1203.51987 NaN NaN NaN NaN NaN NaN NaN 10.472 1 10.487 9.9869 10.987 0.015327 0 0 0 0.94337 1 5181 5181 0.094841 0 1 67829 14767 45070 46088 79290 79290 -0.07375006017650776 VCPSEHKCICI 11 Unmodified _VCPSEHKCICI_ 0 0 0 REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.28515625 2 616.285237 1230.55592 NaN NaN NaN NaN NaN NaN NaN 60.305 1 59.814 59.314 60.314 -0.49079 0 0 0 0.93224 1 32835 32835 5.7319 1.7875 1 + 67830 26760 45071 46089 79291 79291 -0.050135488407931916 VCPVHQPEVTF 11 Unmodified _VCPVHQPEVTF_ 0 0 0 REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.8098754882812 2 628.310623 1254.60669 0.69033 0.00043374 -0.99955 -0.00062803 -0.30922 -0.00019429 628.3106482563412 80.196 0.081718 74.021 73.989 74.071 -6.1757 8 4 2 0 0 0 0.08701 1 52617 52617 43.982 4.0321 1 8836800 + 67831 27110 45072 46090 79292 79292 -0.010425601999486389 VCPVHQPEVTF 11 Unmodified _VCPVHQPEVTF_ 0 0 0 REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF REV__ENST00000443317.1_1_20:32801869-32802238:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 628.3096313476562 2 628.310623 1254.60669 NaN NaN NaN NaN NaN NaN NaN 79.82 1 73.644 73.144 74.144 -6.1757 0 0 0 0.13061 1 52337 52337 45.74 5.7902 1 + 67832 27110 45072 46090 79293 79293 -0.010425601999486389 VCRNELFCLHL 11 Unmodified _VCRNELFCLHL_ 0 0 0 ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5 ENSG00000110756|ENST00000349215|HPS5 ENSG00000110756|ENST00000349215|HPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.5628356933594 3 449.561775 1345.6635 0.5157 0.00023184 1.1012 0.00049504 1.6169 0.00072688 449.56261049797183 19.863 0.11457 19.871 19.801 19.915 0.0078487 10 5 2 0 0 0 0.7326 1 10116 10116 0.40827 0 1 469840 67833 2739 45073 46091 79294 79294 0.004491640849437317 VCRRLGRH 8 Unmodified _VCRRLGRH_ 0 0 0 REV__ENST00000460783.1_1_21:38071452-38071680:+|nuORF REV__ENST00000460783.1_1_21:38071452-38071680:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7854309082031 2 498.785244 995.555936 0.73525 0.00036673 1.0016 0.00049956 1.7368 0.0008663 498.7855467039586 80.653 0.42757 80.161 79.929 80.356 -0.49247 46 17 4 0 0 0 0.80311 1 44211 44211 4.756 0 1 1797700 + 67834 27303 45074 46092 79295 79295 0.05798000056381625 VCRVAFRLC 9 Unmodified _VCRVAFRLC_ 0 0 0 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 REV__nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.25537109375 2 533.786064 1065.55758 0.58088 0.00031007 -0.57783 -0.00030844 0.0030515 1.6289E-06 534.2868521413025 53.326 0.35815 47.522 47.318 47.676 -5.8042 44 22 3 0 0 0 0.20528 1 33657 33657 4.756 0 1 21126000 + 67835 17355 45075 46093 79296 79296 0.027418730301405958 VCSHQDKEKG 10 Unmodified _VCSHQDKEKG_ 0 0 0 nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7675170898438 2 565.76658 1129.51861 0.91344 0.0005168 0.24855 0.00014062 1.162 0.00065742 565.7665048542416 58.343 1.5868 58.282 57.599 59.186 -0.060722 225 79 3 0 0 0 0.50362 3 31525 31525;31843;32171 16.149 1.7437 1 19319000 67836 7156 45076 46094 79297;79298;79299 79297 -0.040971807905634705 VCSHQDKEKG 10 Unmodified _VCSHQDKEKG_ 0 0 0 nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7673950195312 2 565.76658 1129.51861 1.2395 0.00070124 -0.093763 -5.3048E-05 1.1457 0.00064819 565.7666639052073 50.518 1.1803 44.979 44.424 45.604 -5.5391 233 74 4 0 0 0 0.40136 1 31896 31896 21.537 2.175 1 223280000 67837 7156 45076 46094 79300 79300 -0.040971807905634705 VCSHQDKEKG 10 Unmodified _VCSHQDKEKG_ 0 0 0 nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7673950195312 2 565.76658 1129.51861 1.5361 0.0008691 -0.083712 -4.7361E-05 1.4524 0.00082174 565.7665488173519 64.413 1.4108 58.237 57.487 58.897 -6.1757 121 77 2 0 0 0 0.29752 2 41384 41384;41829 27.629 2.6378 1 92903000 67838 7156 45076 46094 79301;79302 79301 -0.040971807905634705 VCSHQDKEKG 10 Unmodified _VCSHQDKEKG_ 0 0 0 nc|ENSG00000164175|Q9UMX9-4|SLC45A2;ENSG00000164175|ENST00000296589|SLC45A2;nc|ENSG00000164175|Q9UMX9-2|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MSMS AL20221201_MKP_PDAC_01 4 565.7681274414062 2 565.76658 1129.51861 NaN NaN NaN NaN NaN NaN NaN 67.198 1 61.023 60.523 61.523 -6.1757 0 0 0 0.3465 1 43759 43759 34.402 3.1334 1 67839 7156 45076 46094 79303 79303 -0.040971807905634705 VCSKFLAML 9 Unmodified _VCSKFLAML_ 0 0 0 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7737731933594 2 506.271924 1010.52929 0.024506 1.2407E-05 0.018219 9.2236E-06 0.042725 2.163E-05 506.27177635014334 93.245 0.46538 87.069 86.754 87.22 -6.1757 55 33 2 0 0 0 0.10734 1 61687 61687 32.305 0 1 18096000 67840 6941 45077 46095 79304 79304 0.02445130330181655 VCSLSLNDE 9 Unmodified _VCSLSLNDE_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2285766601562 2 490.223682 978.432811 -0.21598 -0.00010588 1.9324 0.0009473 1.7164 0.00084142 490.22506946952785 22.687 0.6192 22.687 22.283 22.903 0 69 31 3 0 0 0 0.55144 1 11358 11358 4.3292 0 1 3037600 + 67841 21247 45078 46096 79305 79305 -0.057267656960675595 VCSQPPRTAGD 11 Unmodified _VCSQPPRTAGD_ 0 0 0 ENSG00000176542|ENST00000316407|USF3 ENSG00000176542|ENST00000316407|USF3 ENSG00000176542|ENST00000316407|USF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7677612304688 2 565.76658 1129.51861 1.2395 0.00070124 -0.093763 -5.3048E-05 1.1457 0.00064819 565.7666639052073 50.518 1.1803 44.979 44.424 45.604 -5.5391 233 74 4 0 0 0 0.16515 1 31625 31625 34.932 0.53034 1 223280000 67842 8602 45079 46097 79306 79306 -0.040971807905634705 VCSWWRGCC 9 Unmodified _VCSWWRGCC_ 0 0 0 ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2193603515625 2 550.217157 1098.41976 NaN NaN NaN NaN NaN NaN NaN 4.9166 1 4.9166 4.4166 5.4166 0 0 0 0 0.8622 1 2365 2365 0 0 1 67843 12662 45080 46098 79307 79307 -0.12551198560800003 VCSWWRGCC 9 Unmodified _VCSWWRGCC_ 0 0 0 ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2167358398438 2 550.217157 1098.41976 NaN NaN NaN NaN NaN NaN NaN 9.0707 1 8.9791 8.4791 9.4791 -0.09156 0 0 0 0.8622 1 4443 4443 0 0 1 67844 12662 45080 46098 79308 79308 -0.12551198560800003 VCSWWRGCC 9 Unmodified _VCSWWRGCC_ 0 0 0 ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF ENST00000392038.6_1_19:40737669-40737759:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.21630859375 2 550.217157 1098.41976 NaN NaN NaN NaN NaN NaN NaN 6.6535 1 6.6624 6.1624 7.1624 0.0089307 0 0 0 0.8622 1 3330 3330 0 0 1 67845 12662 45080 46098 79309 79309 -0.12551198560800003 VCTQWYRF 8 Unmodified _VCTQWYRF_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 368.5497131347656 3 368.176138 1101.50659 1.4446 0.00053185 -2.8391 -0.0010453 -1.3946 -0.00051345 368.5095638518139 41.143 0.29997 36.535 36.371 36.671 -4.6079 29 18 2 0 0 0 8.7369 1 24610 24610 7.2892 5.8073 1 9408900 67846 825 45081 46099 79310 79310 -0.04010752743079138 VCTQWYRF 8 Unmodified _VCTQWYRF_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.176138 1101.50659 -0.42497 -0.00015646 -1.6371 -0.00060273 -2.062 -0.00075919 368.1754832634577 36.633 0.1115 36.383 36.293 36.405 -0.2497 -0.076174 0.00041978 NaN 7.2892 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1408000 67847 825 45081 46099 -0.04010752743079138 VCTSNNECDND 11 Unmodified _VCTSNNECDND_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MSMS AL20221201_MKP_PDAC_01 4 607.2083129882812 2 607.208434 1212.40232 NaN NaN NaN NaN NaN NaN NaN 8.8809 1 6.3989 5.8989 6.8989 -2.482 0 0 0 0.9435 1 4480 4480 0 0 1 + 67848 20755 45082 46100 79311 79311 -0.19538912143434572 VCVCHERFLR 10 Unmodified _VCVCHERFLR_ 0 0 0 REV__nc|ENSG00000137770|Q05D32-2|CTDSPL2 REV__nc|ENSG00000137770|Q05D32-2|CTDSPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.3165283203125 2 631.31826 1260.62197 0.15992 0.00010096 -4.0629 -0.002565 -3.903 -0.002464 631.3157478004341 97.529 0.23074 97.529 97.397 97.627 0 11 9 2 0 0 0 0.72196 1 53842 53842 0.45834 0.057624 1 288370 + 67849 20265 45083 46101 79312 79312 0.0020802811625344475 VCVCVCVK 8 Unmodified _VCVCVCVK_ 0 0 0 ENST00000437198.6_1_16:14529576-14529846:-|nuORF ENST00000437198.6_1_16:14529576-14529846:-|nuORF ENST00000437198.6_1_16:14529576-14529846:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7119445800781 2 426.710645 851.406737 NaN NaN NaN NaN NaN NaN NaN 91.17 1 90.675 90.175 91.175 -0.49457 0 0 0 0.97444 1 49838 49838 0.69038 0 1 67850 13344 45084 46102 79313 79313 -0.024910296728990033 VCVGGHRC 8 Unmodified _VCVGGHRC_ 0 0 0 REV__ENSG00000164161|ENST00000296575|HHIP REV__ENSG00000164161|ENST00000296575|HHIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.6932983398438 2 415.691632 829.368712 1.5933 0.00066233 1.6115 0.0006699 3.2049 0.0013322 415.69278001049975 33.787 0.44754 29.802 29.555 30.002 -3.9853 56 24 3 0 0 0 0.77907 1 19316 19316 10.183 4.423 1 15476000 + 67851 21879 45085 46103 79314 79314 -0.05279779543343466 VCVVAGEFKW 10 Unmodified _VCVVAGEFKW_ 0 0 0 REV__nc|ENSG00000143543|O76095-2|JTB REV__nc|ENSG00000143543|O76095-2|JTB MSMS AL20221201_MKP_PDAC_01 4 379.8636474609375 3 379.86356 1136.56885 NaN NaN NaN NaN NaN NaN NaN 45.216 1 40.268 39.768 40.768 -4.9477 0 0 0 0.83226 1 27717 27717 10.899 0.74838 1 + 67852 20650 45086 46104 79315 79315 0.0060297360525964905 VCVWLSQS 8 Unmodified _VCVWLSQS_ 0 0 0 REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF REV__ENST00000372870.5_1_9:131122965-131123439:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 923.4556274414062 1 921.449865 920.442588 0.51975 0.00047893 -0.51327 -0.00047296 0.0064784 5.9695E-06 921.4494900783383 68.151 0.43839 61.975 61.784 62.223 -6.1757 52 25 3 0 0 0 0.48669 1 44512 44512 36.044 0 1 41523000 + 67853 26129 45087 46105 79316 79316 -0.020815329000242855 VCWLPLHVF 9 Unmodified _VCWLPLHVF_ 0 0 0 ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3003540039062 2 557.29933 1112.58411 1.8071 0.0010071 2.543 0.0014172 4.3501 0.0024243 557.3001636381235 92.55 0.33794 92.58 92.417 92.755 0.03019 21 12 2 0 0 0 0.53666 1 51500 51500 5.2307 0.90143 1 5031700 67854 3487 45088 46106 79317 79317 0.03231885193099515 VCWWRYWWHYP 11 Unmodified _VCWWRYWWHYP_ 0 0 0 ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.3795166015625 2 841.379706 1680.74486 -0.52367 -0.0004406 0.45748 0.00038491 -0.066187 -5.5689E-05 841.3802013642079 33.342 0.14294 33.342 33.243 33.386 0 11 6 2 0 0 0 0.7453 1 17493 17493 0 0 1 1381700 67855 12973 45089 46107 79318 79318 -0.06828392160832664 VCWWRYWWHYP 11 Unmodified _VCWWRYWWHYP_ 0 0 0 ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.3823852539062 2 841.379706 1680.74486 NaN NaN NaN NaN NaN NaN NaN 52.705 1 52.705 52.205 53.205 0 0 0 0 0.9435 1 29177 29177 0 0 1 67856 12973 45089 46107 79319 79319 -0.06828392160832664 VCWWRYWWHYP 11 Unmodified _VCWWRYWWHYP_ 0 0 0 ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF ENST00000410111.7_1_2:86406577-86422494:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.3804321289062 2 841.379706 1680.74486 0.79484 0.00066876 -0.54256 -0.0004565 0.25228 0.00021226 841.379278578533 39.491 0.28051 35.04 34.876 35.156 -4.4509 27 16 2 0 0 0 0.74157 1 23487 23487 0.35063 0 1 8426300 67857 12973 45089 46107 79320 79320 -0.06828392160832664 VDACYCREPL 10 Unmodified _VDACYCREPL_ 0 0 0 REV__ENSG00000101146|ENST00000395841|RAE1 REV__ENSG00000101146|ENST00000395841|RAE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.544677734375 3 390.175698 1167.50526 0.56706 0.00022125 0.23198 9.0511E-05 0.79904 0.00031177 390.1755307183353 24.652 0.36464 21.768 21.506 21.871 -2.8831 27 19 2 0 0 0 0.23634 1 13472 13472 1.7423 0 1 2387600 + 67858 18134 45090 46108 79321 79321 -0.0717875489413018 VDADPRDLEAF 11 Unmodified _VDADPRDLEAF_ 0 0 0 nc|ENSG00000151615|Q12837-2|POU4F2;ENSG00000151615|ENST00000281321|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 nc|ENSG00000151615|Q12837-2|POU4F2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.1993103027344 3 416.534937 1246.58298 NaN NaN NaN NaN NaN NaN NaN 56.354 1 56.285 55.785 56.785 -0.068737 0 0 0 0.94165 1 30650 30650 0.45452 0 1 67859 6128 45091 46109 79322 79322 -0.030447024327713734 VDAGPAVA 8 Unmodified _VDAGPAVA_ 0 0 0 REV__ENST00000539408.5_1_12:10365578-10365644:+|nuORF REV__ENST00000539408.5_1_12:10365578-10365644:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3386840820312 1 699.367181 698.359904 0.40103 0.00028047 1.0391 0.00072674 1.4402 0.0010072 699.3684454715774 53.901 0.28093 53.901 53.77 54.051 0 31 12 3 0 0 0 8.7369 1 29874 29874 49.669 0 1 5217700 + 67860 28565 45092 46110 79323 79323 -0.0013410663652848598 VDAGVPKQF 9 Unmodified _VDAGVPKQF_ 0 0 0 REV__nc|ENSG00000205221|Q6UXI7-5|VIT REV__nc|ENSG00000205221|Q6UXI7-5|VIT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.7617492675781 2 480.761092 959.507631 0.28833 0.00013862 0.65707 0.00031589 0.9454 0.00045451 480.76163818779395 48.95 0.29554 48.906 48.753 49.049 -0.04369 24 14 2 0 0 0 0.54444 1 26458 26458 4.756 0 1 1482700 + 67861 24217 45093 46111 79324 79324 0.02625784897475114 VDAHTDTTDK 10 Unmodified _VDAHTDTTDK_ 0 0 0 ENSG00000116771|ENST00000375826|AGMAT ENSG00000116771|ENST00000375826|AGMAT ENSG00000116771|ENST00000375826|AGMAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7540893554688 2 551.754192 1101.49383 NaN NaN NaN NaN NaN NaN NaN 12.862 1 12.862 12.362 13.362 0 0 0 0 1.0061 1 6089 6089 0 0 1 67862 3254 45094 46112 79325 79325 -0.052855373922966464 VDCSAEWCH 9 Unmodified _VDCSAEWCH_ 0 0 0 ENST00000263713.9_2_2:120925070-120925472:+|nuORF ENST00000263713.9_2_2:120925070-120925472:+|nuORF ENST00000263713.9_2_2:120925070-120925472:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.4666748046875 3 350.46536 1048.37425 NaN NaN NaN NaN NaN NaN NaN 18.185 1 15.563 15.063 16.063 -2.6215 0 0 0 0.85737 1 9565 9565 0.26902 0.1097 1 67863 11296 45095 46113 79326 79326 -0.1480014554219906 VDCYIIMEFYM 11 Unmodified _VDCYIIMEFYM_ 0 0 0 REV__ENST00000489586.6_1_1:236706790-236711458:+|nuORF REV__ENST00000489586.6_1_1:236706790-236711458:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 713.8114624023438 2 713.80821 1425.60187 0.28063 0.00020031 2.1937 0.0015659 2.4743 0.0017662 713.8101414271495 63.77 0.1461 63.284 63.149 63.295 -0.48617 10 6 2 0 0 0 0.71341 1 34771 34771 2.9952 0.26005 1 1566300 + 67864 19076 45096 46114 79327 79327 -0.09390948449231473 VDDEEKVDERA 11 Unmodified _VDDEEKVDERA_ 0 0 0 nc|ENSG00000197321|O95425-2|SVIL;nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL nc|ENSG00000197321|O95425-2|SVIL nc|ENSG00000197321|O95425-2|SVIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.298828125 2 652.801871 1303.58919 0.19973 0.00013038 4.2426 0.0027696 4.4423 0.0029 652.8058421617221 57.83 0.27439 57.83 57.716 57.99 0 17 11 2 0 0 0 0.5942 1 32160 32160 14.405 2.1647 1 1268700 67865 9939 45097 46115 79328 79328 -0.05046228991886892 VDDFNLKYENE 11 Unmodified _VDDFNLKYENE_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 693.3148803710938 2 693.314614 1384.61468 0.18731 0.00012986 0.81407 0.0005644 1.0014 0.00069427 693.3151547046272 55.079 0.34502 54.601 54.429 54.774 -0.47798 46 16 4 0 0 0 0.67892 1 29821 29821 7.609 2.3121 1 12003000 + 67866 210 45098 46116 79329 79329 -0.062247544694855605 VDDPMARY 8 Unmodified _VDDPMARY_ 0 0 0 ENST00000243997.7_1_20:57601245-57601359:-|nuORF ENST00000243997.7_1_20:57601245-57601359:-|nuORF ENST00000243997.7_1_20:57601245-57601359:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.443603515625 1 966.434943 965.427666 0.59885 0.00057875 -0.25623 -0.00024763 0.34262 0.00033112 966.4347142953145 73.657 0.32545 73.181 72.974 73.299 -0.47588 27 13 3 0 0 0 0.80676 1 40284 40284 2.5775 0 1 2411500 67867 11115 45099 46117 79330 79330 -0.056430247680282264 VDDSAEFKCE 10 Unmodified _VDDSAEFKCE_ 0 0 0 nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1 nc|ENSG00000169855|Q9Y6N7-6|ROBO1 nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7362060546875 2 571.737154 1141.45975 -0.45123 -0.00025798 -1.7698 -0.0010119 -2.221 -0.0012698 571.7362082410098 27.99 0.20293 27.99 27.845 28.048 0 14 11 2 0 0 0 0.63399 1 14467 14467 9.3831 3.6227 1 5132200 67868 7919 45100 46118 79331 79331 -0.10531701875538602 VDEDCEEC 8 Unmodified _VDEDCEEC_ 0 0 0 nc|ENSG00000106608|Q8TCY9-3|URGCP;nc|ENSG00000106608|Q8TCY9-4|URGCP;nc|ENSG00000106608|Q8TCY9-2|URGCP;ENSG00000106608|ENST00000453200|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP nc|ENSG00000106608|Q8TCY9-3|URGCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.6487426757812 2 471.146783 940.279013 -0.024633 -1.1606E-05 -1.0069 -0.00047441 -1.0315 -0.00048601 471.1462950378709 45.145 0.25328 45.145 44.996 45.249 0 38 12 5 0 0 0 0.80992 1 24556 24556 0.69038 0 1 11537000 67869 2442 45101 46119 79332 79332 -0.19351543523907822 VDEEEEYKHFK 11 Unmodified _VDEEEEYKHFK_ 0 0 0 REV__ENSG00000171861|ENST00000304478|MRM3 REV__ENSG00000171861|ENST00000304478|MRM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.8359985351562 2 726.835714 1451.65687 0.30641 0.00022271 0.016232 1.1798E-05 0.32264 0.00023451 726.8357380388197 55.532 0.31164 55.054 54.841 55.152 -0.47798 54 14 5 0 0 0 0.68427 1 30050 30050 5.7319 5.7319 1 21793000 + 67870 22609 45102 46120 79333 79333 -0.050887790611113815 VDEEEEYKHFK 11 Unmodified _VDEEEEYKHFK_ 0 0 0 REV__ENSG00000171861|ENST00000304478|MRM3 REV__ENSG00000171861|ENST00000304478|MRM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 726.8358154296875 2 726.835714 1451.65687 -0.099894 -7.2607E-05 0.04903 3.5637E-05 -0.050864 -3.697E-05 726.8357222154307 55.787 0.34721 55.309 55.132 55.479 -0.47798 65 16 5 0 0 0 0.68427 1 30262 30262 5.7319 5.7319 1 49001000 + 67871 22609 45102 46120 79334 79334 -0.050887790611113815 VDEELKVW 8 Unmodified _VDEELKVW_ 0 0 0 ENSG00000114999|ENST00000233336|TTL;ENST00000476615.1_1_2:113258880-113278003:+|nuORF ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2662048339844 2 509.266207 1016.51786 0.50053 0.00025491 -1.6932 -0.00086229 -1.1927 -0.00060738 509.2656076073984 68.173 0.63367 68.173 67.697 68.33 0 39 30 2 0 0 0 0.80383 1 38072 38072 4.3292 0 1 1144200 67872 3078 45103 46121 79335 79335 0.010263478320553077 VDEFEEQRF 9 Unmodified _VDEFEEQRF_ 0 0 0 REV__nc|ENSG00000143674|Q5TCX8-3|MAP3K21 REV__nc|ENSG00000143674|Q5TCX8-3|MAP3K21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.1844482421875 3 400.184016 1197.53022 NaN NaN NaN NaN NaN NaN NaN 16.951 1 16.951 16.451 17.451 0 0 0 0 0.7453 1 8314 8314 4.897 1.31 1 + 67873 20662 45104 46122 79336 79336 -0.060646604955763905 VDEGIHEPFV 10 Unmodified _VDEGIHEPFV_ 0 0 0 REV__ENSG00000198954|ENST00000361983|KIFBP REV__ENSG00000198954|ENST00000361983|KIFBP MSMS AL20221201_MKP_PDAC_01 4 381.1907043457031 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 60.501 1 54.353 53.853 54.853 -6.1478 0 0 0 0.94014 1 38935 38935 3.3196 0.88486 1 + 67874 24107 45105 46123 79337 79337 -0.019511686276018736 VDENYEWDSEF 11 Unmodified _VDENYEWDSEF_ 0 0 0 ENST00000493195.5_1_1:159897137-159898861:-|nuORF;ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9 ENST00000493195.5_1_1:159897137-159898861:-|nuORF ENST00000493195.5_1_1:159897137-159898861:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2642211914062 3 478.189495 1431.54666 -0.58137 -0.000278 0.58594 0.00028019 0.0045703 2.1855E-06 478.1900671191508 32.054 0.24456 32.054 31.92 32.164 0 44 11 5 0 0 0 0.30572 1 16768 16768 0.45452 0 1 4288800 67875 14308 45106 46124 79338 79338 -0.15185624120158536 VDERPESPSEP 11 Unmodified _VDERPESPSEP_ 0 0 0 REV__nc|ENSG00000187867|A6NDB9|PALM3 REV__nc|ENSG00000187867|A6NDB9|PALM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2203979492188 2 621.285857 1240.55716 -0.078537 -4.8794E-05 -2.2312 -0.0013862 -2.3098 -0.001435 621.2842495156816 23.536 0.23594 23.536 23.387 23.623 0 16 11 2 0 0 0 0.30526 1 11959 11959 2.7352 0.67545 1 492850 + 67876 23671 45107 46125 79339 79339 -0.053495966750460866 VDESDMRRY 9 Unmodified _VDESDMRRY_ 0 0 0 REV__nc|ENSG00000007062|O43490-5|PROM1 REV__nc|ENSG00000007062|O43490-5|PROM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7661743164062 2 585.764037 1169.51352 0.054403 3.1867E-05 4.3211 0.0025312 4.3755 0.002563 585.7676579828577 62.534 0.2495 62.534 62.454 62.704 0 17 11 2 0 0 0 0.32871 1 34890 34890 15.847 1.9411 1 1781800 + 67877 17002 45108 46126 79340 79340 -0.06445484653158928 VDETMNNYL 9 Unmodified _VDETMNNYL_ 0 0 0 NIFK|p.A103D|1|0.08|ENSG00000155438|chr2:121732140-121732140|G/T|missense_variant NIFK|p.A103D|1|0.08|ENSG00000155438|chr2:121732140-121732140|G/T|missense_variant NIFK|p.A103D|1|0.08|ENSG00000155438|chr2:121732140-121732140|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 366.8324279785156 3 366.830585 1097.46993 NaN NaN NaN NaN NaN NaN NaN 88.69 1 82.514 82.014 83.014 -6.1757 0 0 0 0.6306 1 58523 58523 7.609 0 1 67878 16669 45109 46127 79341 79341 -0.07491094150327626 VDETSEEQSLL 11 Unmodified _VDETSEEQSLL_ 0 0 0 REV__ENST00000395811.9_1_17:17089000-17089168:+|nuORF REV__ENST00000395811.9_1_17:17089000-17089168:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.7678833007812 2 625.293347 1248.57214 -0.42498 -0.00026573 -0.38896 -0.00024321 -0.81394 -0.00050895 625.2929629143778 77.024 0.26252 76.544 76.388 76.651 -0.47945 28 11 4 0 0 0 0.29564 1 42185 42185 5.7319 0 1 1489900 + 67879 26487 45110 46128 79342 79342 -0.04220149597699674 VDETTCGHTHF 11 Unmodified _VDETTCGHTHF_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2645874023438 2 623.761494 1245.50844 -0.31396 -0.00019584 1.0865 0.00067773 0.77256 0.00048189 623.7617301419624 41.03 0.3323 41.03 40.949 41.281 0 34 17 3 0 0 0 0.65108 1 22115 22115 8.7454 2.5396 1 6149000 67880 7420 45111 46129 79343 79343 -0.10449788515802538 VDETTCGHTHF 11 Unmodified _VDETTCGHTHF_ 0 0 0 ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295;nc|ENSG00000166004|Q9C0D2-4|CEP295;nc|ENSG00000166004|Q9C0D2-2|CEP295 ENSG00000166004|ENST00000325212|CEP295 ENSG00000166004|ENST00000325212|CEP295 MSMS AL20221201_MKP_PDAC_01 4 416.1775512695312 3 416.176755 1245.50844 NaN NaN NaN NaN NaN NaN NaN 46.426 1 41.346 40.846 41.846 -5.0805 0 0 0 0.93893 1 28671 28671 1.3296 0 1 67881 7420 45111 46129 79344 79344 -0.10449788515802538 VDFFINIEVY 10 Unmodified _VDFFINIEVY_ 0 0 0 REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2157897949219 3 420.216657 1257.62814 0.034499 1.4497E-05 -1.619 -0.00068033 -1.5845 -0.00066583 420.5505293441696 28.98 0.18498 29.01 28.894 29.079 0.030106 13 7 2 0 0 0 0.67046 1 15087 15087 6.1918 0.89496 1 2904600 + 67882 27953 45112 46130 79345 79345 0.009631481004362286 VDFGFGNS 8 Unmodified _VDFGFGNS_ 0 0 0 REV__ENSG00000120093|ENST00000498678|HOXB3 REV__ENSG00000120093|ENST00000498678|HOXB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.3680419921875 1 842.367909 841.360633 -0.049466 -4.1669E-05 0.17466 0.00014712 0.12519 0.00010546 842.3679425382655 52.542 0.30013 52.542 52.402 52.702 0 30 13 3 0 0 0 0.71527 2 29029 29029;29144 15.847 15.847 1 11190000 + 67883 19227 45113 46131 79346;79347 79346 -0.06639311987476049 VDFPSPGP 8 Unmodified _VDFPSPGP_ 0 0 0 ENSG00000215182|ENST00000621226|MUC5AC;MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant;ENST00000358378.6_11:1212786-1216326:+|nuORF ENSG00000215182|ENST00000621226|MUC5AC ENSG00000215182|ENST00000621226|MUC5AC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 815.3963012695312 1 815.393396 814.386119 0.083788 6.832E-05 0.15107 0.00012319 0.23486 0.00019151 815.3934516102642 58.427 0.38026 58.427 58.131 58.511 0 22 14 2 0 0 0 0.76266 2 32450 32450;32547 11.64 2.2929 1 957920 67884 10523 45114 46132 79348;79349 79348 -0.028498374650439473 VDFTMDVQF 9 Unmodified _VDFTMDVQF_ 0 0 0 REV__ENSG00000229292|ENST00000341750|RFPL4AL1 REV__ENSG00000229292|ENST00000341750|RFPL4AL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7471923828125 2 551.2497 1100.48485 0.71904 0.00039637 -3.2555 -0.0017946 -2.5365 -0.0013982 551.7475084279837 68.016 0.31263 67.534 67.346 67.659 -0.48218 22 14 2 0 0 0 0.30562 1 37212 37212 16.942 3.4344 1 2318500 + 67885 24374 45115 46133 79350 79350 -0.06137602282319676 VDFYPEDKN 9 Unmodified _VDFYPEDKN_ 0 0 0 ENST00000430179.5_1_3:10332445-10334554:-|nuORF ENST00000430179.5_1_3:10332445-10334554:-|nuORF ENST00000430179.5_1_3:10332445-10334554:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5066833496094 3 376.173228 1125.49785 0.67756 0.00025488 -0.33344 -0.00012543 0.34411 0.00012945 376.17343275787965 12.024 0.02431 9.5425 9.535 9.5594 -2.482 5 4 2 0 0 0 0.59218 1 6069 6069 0.96228 0 1 596560 67886 13232 45116 46134 79351 79351 -0.05987447898564824 VDGGRGTRRR 10 Unmodified _VDGGRGTRRR_ 0 0 0 ENST00000452135.6_3_5:179661389-179661548:-|nuORF ENST00000452135.6_3_5:179661389-179661548:-|nuORF ENST00000452135.6_3_5:179661389-179661548:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.6981201171875 2 565.318494 1128.62244 NaN NaN NaN NaN NaN NaN NaN 19.172 1 19.179 18.679 19.679 0.0078487 0 0 0 0.99091 1 9743 9743 1.6526 0.17072 1 67887 13538 45117 46135 79352 79352 0.063269071519926 VDGKVPKG 8 Unmodified _VDGKVPKG_ 0 0 0 REV__nc|ENSG00000156535|Q6YHK3-2|CD109 REV__nc|ENSG00000156535|Q6YHK3-2|CD109 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2373962402344 2 400.237253 798.459953 1.6756 0.00067064 0.38846 0.00015548 2.0641 0.00082611 400.2372524649925 104.63 0.079514 98.454 98.417 98.497 -6.1757 5 3 2 0 0 0 0.80992 1 70069 70069 0.69038 0 1 6957600 + 67888 21337 45118 46136 79353 79353 0.05266130697293647 VDGLTEVWNF 10 Unmodified _VDGLTEVWNF_ 0 0 0 ENST00000379752.5_1_1:157029186-157029948:-|nuORF ENST00000379752.5_1_1:157029186-157029948:-|nuORF ENST00000379752.5_1_1:157029186-157029948:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.28759765625 2 590.287671 1178.56079 0.19086 0.00011266 -0.3918 -0.00023127 -0.20094 -0.00011861 590.2875005914505 69.038 0.33905 69.038 68.864 69.203 0 32 14 3 0 0 0 0.70734 1 38542 38542 1.8442 0 1 2539100 67889 12578 45119 46137 79354 79354 -0.02134882110522085 VDGQEAYFHL 10 Unmodified _VDGQEAYFHL_ 0 0 0 REV__ENSG00000127580|ENST00000293883|WDR24 REV__ENSG00000127580|ENST00000293883|WDR24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7747192382812 2 589.77747 1177.54039 -0.56182 -0.00033135 -1.5756 -0.00092925 -2.1374 -0.0012606 589.7765184914597 17.17 0.17667 17.17 17.07 17.246 0 57 38 2 0 0 0 0.71123 1 8386 8386 1.6526 0.17072 1 597250 + 67890 19585 45120 46138 79355 79355 -0.04128052770306567 VDHAAPETY 9 Unmodified _VDHAAPETY_ 0 0 0 nc|ENSG00000184368|Q96T17|MAP7D2;nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7292785644531 2 501.729989 1001.44543 -0.1931 -9.6883E-05 -0.73737 -0.00036996 -0.93047 -0.00046684 501.7295982274176 29.766 0.30704 29.766 29.624 29.931 0 43 17 3 0 0 0 0.14602 1 15435 15435 28.487 0 1 15983000 67891 16455 45121 46139 79356 79356 -0.05523986241530565 VDHAAPETY 9 Unmodified _VDHAAPETY_ 0 0 0 nc|ENSG00000184368|Q96T17|MAP7D2;nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 nc|ENSG00000184368|Q96T17|MAP7D2 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 501.729989 1001.44543 1.5272 0.00076624 -0.036397 -1.8261E-05 1.4908 0.00074798 501.73007624866085 33.907 0.48958 29.921 29.643 30.133 -3.9853 0.077848 0.00025016 NaN 28.487 66 26 3 NaN NaN NaN NaN 0 NaN NaN 0 38368000 67892 16455 45121 46139 -0.05523986241530565 VDHNTKTTTW 10 Unmodified _VDHNTKTTTW_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-4|WWP2 nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.798095703125 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.44373 2 51871 51871;52014 19.257 2.1441 1 114760000 67893 10084 45122 46140 79357;79358 79357 -0.019972653673448804 VDHSSSGD 8 Unmodified _VDHSSSGD_ 0 0 0 ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.1606140136719 2 402.161939 802.309325 0.93547 0.00037621 -1.5428 -0.00062045 -0.60732 -0.00024424 402.16111363941866 63.324 0.42551 57.149 56.949 57.375 -6.1757 39 24 2 0 0 0 0.80232 1 40906 40906 5.2307 2.6532 1 20969000 67894 4841 45123 46141 79359 79359 -0.09973680752170822 VDHVAACT 8 Unmodified _VDHVAACT_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.519287109375 2 408.189445 814.364338 NaN NaN NaN NaN NaN NaN NaN 16.834 1 16.834 16.334 17.334 0 0 0 0 0.97444 1 8247 8247 2.5775 0 1 + 67895 20701 45124 46142 79360 79360 -0.05026965485285473 VDIDNPYFNF 10 Unmodified _VDIDNPYFNF_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.7975463867188 2 622.285128 1242.5557 -0.038455 -2.393E-05 2.0453 0.0012727 2.0068 0.0012488 622.2857860420878 78.719 0.77995 78.233 77.928 78.708 -0.48596 73 33 4 0 0 0 0.23634 1 43278 43278 6.7232 0.51738 1 1759700 67896 7792 45125 46143 79361 79361 -0.05587185973149644 VDIQPGKR 8 Unmodified _VDIQPGKR_ 0 0 0 REV__ENSG00000185567|ENST00000333244|AHNAK2 REV__ENSG00000185567|ENST00000333244|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.8829040527344 2 456.766709 911.518865 0.30169 0.0001378 1.3066 0.0005968 1.6083 0.0007346 456.7671387110146 15.747 0.20476 15.752 15.643 15.848 0.0057774 39 17 3 0 0 0 0.80992 1 7807 7807 0.69038 0 1 2143400 + 67897 23510 45126 46144 79362 79362 0.05956606991617264 VDIWNMIEAF 10 Unmodified _VDIWNMIEAF_ 0 0 0 nc|ENSG00000138101|O60941-3|DTNB;nc|ENSG00000138101|O60941-5|DTNB;nc|ENSG00000138101|O60941-2|DTNB;nc|ENSG00000138101|O60941-4|DTNB;nc|ENSG00000138101|O60941-7|DTNB;ENSG00000138101|ENST00000406818|DTNB;ENST00000493538.5_1_2:25803688-25875529:-|nuORF;ENST00000472690.5_1_2:25819066-25872751:-|nuORF nc|ENSG00000138101|O60941-3|DTNB nc|ENSG00000138101|O60941-3|DTNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2987060546875 2 619.299724 1236.5849 0.66261 0.00041035 -1.3106 -0.00081163 -0.64796 -0.00040128 619.2992104970024 64.069 0.6922 63.584 63.432 64.125 -0.48512 41 33 2 0 0 0 0.6966 1 34972 34972 3.2813 0.54611 1 1064800 67898 5018 45127 46145 79363 79363 -0.023933649485115893 VDKAYKLL 8 Unmodified _VDKAYKLL_ 0 0 0 ENST00000468074.1_1_3:136455647-136455845:-|nuORF;ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8 ENST00000468074.1_1_3:136455647-136455845:-|nuORF ENST00000468074.1_1_3:136455647-136455845:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2903442382812 2 475.289485 948.564418 0.24261 0.00011531 0.2124 0.00010095 0.45501 0.00021626 475.2895415867653 61.499 0.31567 61.467 61.313 61.629 -0.032787 37 15 3 0 0 0 0.64853 1 33652 33652 21.747 0.20967 1 16382000 67899 3960 45128 46146 79364 79364 0.08807832453999254 VDKEMTSTQNE 11 Unmodified _VDKEMTSTQNE_ 0 0 0 REV__nc|ENSG00000132530|Q6GPH4-6|XAF1 REV__nc|ENSG00000132530|Q6GPH4-6|XAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8591613769531 3 427.859092 1280.55545 NaN NaN NaN NaN NaN NaN NaN 16.699 1 16.699 16.199 17.199 0 0 0 0 0.9435 1 8165 8165 0 0 1 + 67900 19861 45129 46147 79365 79365 -0.07360973755271516 VDKTFLKQI 9 Unmodified _VDKTFLKQI_ 0 0 0 REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2 REV__nc|ENSG00000177324|Q8NDZ0-2|BEND2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 546.2900390625 2 546.326599 1090.63865 0.64517 0.00035247 0.35459 0.00019372 0.99976 0.0005462 546.3268474006209 63.127 0.36147 56.952 56.836 57.197 -6.1757 32 19 2 0 0 0 0.20207 1 40938 40938 11.64 0 1 20433000 + 67901 22978 45130 46148 79366 79366 0.09695175545516577 VDLEPNSHVT 10 Unmodified _VDLEPNSHVT_ 0 0 0 REV__ENSG00000167646|ENST00000524407|DNAAF3 REV__ENSG00000167646|ENST00000524407|DNAAF3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.2391967773438 2 555.774928 1109.5353 1.0407 0.00057838 1.63 0.00090591 2.6707 0.0014843 555.7754944095776 34.872 0.17039 30.777 30.668 30.838 -4.0951 12 9 2 0 0 0 0.22489 1 20129 20129 8.7454 5.4641 1 2924300 + 67902 22234 45131 46149 79367 79367 -0.015083566329394671 VDLSLKGP 8 Unmodified _VDLSLKGP_ 0 0 0 REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF REV__ENST00000578759.1_1_17:60214444-60217453:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.7463684082031 2 414.744911 827.475269 0.22768 9.4429E-05 2.7571 0.0011435 2.9848 0.0012379 414.74606203238375 54.927 0.21497 54.858 54.724 54.939 -0.068737 16 10 2 0 0 0 0.80992 1 29845 29845 0.69038 0 1 1935200 + 67903 17985 45132 46150 79368 79368 0.05462997494487354 VDLSPDGLMI 10 Unmodified _VDLSPDGLMI_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A;ENST00000585896.5_1_19:14017059-14023988:+|nuORF nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8523254394531 3 353.851209 1058.5318 1.82 0.00064402 0.69315 0.00024527 2.5132 0.00088929 353.8514563641816 95.136 0.75718 88.96 88.642 89.399 -6.1757 70 42 2 0 0 0 0.44373 1 62877 62877 12.175 0 1 9412000 67904 4369 45133 46151 79369 79369 0.004872572688327637 VDLTPDYCDL 10 Unmodified _VDLTPDYCDL_ 0 0 0 REV__nc|ENSG00000171617|O14682-2|ENC1 REV__nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.2574462890625 2 577.257722 1152.50089 0.75079 0.0004334 -2.5187 -0.0014539 -1.7679 -0.0010205 577.2559033623967 73.342 0.1832 73.342 73.271 73.454 0 15 10 2 0 0 0 0.66569 1 40864 40864 6.7232 0 1 1081600 + 67905 22584 45134 46152 79370 79370 -0.06925940836072186 VDLYRLEKL 9 Unmodified _VDLYRLEKL_ 0 0 0 nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6;ENSG00000088053|ENST00000310373|GP6 nc|ENSG00000088053|Q9HCN6-2|GP6 nc|ENSG00000088053|Q9HCN6-2|GP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8377075195312 2 574.837331 1147.66011 0.50062 0.00028777 1.057 0.00060758 1.5576 0.00089535 574.8379176373578 63.25 0.30509 62.763 62.622 62.927 -0.48617 29 13 3 0 0 0 0.14594 1 34475 34475 30.637 6.616 1 1762900 67906 1478 45135 46153 79371 79371 0.0921856057423156 VDLYRLEKL 9 Unmodified _VDLYRLEKL_ 0 0 0 nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6;ENSG00000088053|ENST00000310373|GP6 nc|ENSG00000088053|Q9HCN6-2|GP6 nc|ENSG00000088053|Q9HCN6-2|GP6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.837331 1147.66011 0.41133 0.00023645 0.30111 0.00017309 0.71244 0.00040954 574.8374373602386 62.843 0.23029 62.821 62.717 62.948 -0.021614 0.028945 -0.000353 NaN 30.637 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 4264300 67907 1478 45135 46153 0.0921856057423156 VDMPCLPL 8 Unmodified _VDMPCLPL_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2228088378906 2 444.2219 886.429246 1.2078 0.00053655 1.0792 0.00047942 2.2871 0.001016 444.2222918564005 49.551 0.47472 49.502 49.331 49.805 -0.048824 60 23 3 0 0 0 0.80676 1 26845 26845 2.5775 0 1 18053000 67908 2709 45136 46154 79372 79372 -0.018511070036197452 VDNGNYANKL 10 Unmodified _VDNGNYANKL_ 0 0 0 REV__ENSG00000183098|ENST00000377047|GPC6 REV__ENSG00000183098|ENST00000377047|GPC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2752685546875 2 554.275095 1106.53564 NaN NaN NaN NaN NaN NaN NaN 82.022 1 82.022 81.522 82.522 0 0 0 0 0.97302 1 45514 45514 3.5965 1.019 1 + 67909 23321 45137 46155 79373 79373 -0.013369369131169151 VDNHGYNVQ 9 Unmodified _VDNHGYNVQ_ 0 0 0 ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2368774414062 2 523.238513 1044.46247 NaN NaN NaN NaN NaN NaN NaN 65.943 1 65.943 65.443 66.443 0 0 0 0 0.7818 1 36780 36780 6.7232 0.96273 1 67910 1556 45138 46156 79374 79374 -0.057980656357358384 VDNQYWRYDER 11 Unmodified _VDNQYWRYDER_ 0 0 0 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2361450195312 3 515.235661 1542.68515 0.50861 0.00026206 0.06948 3.5799E-05 0.57809 0.00029785 515.2357796251431 52.223 0.27948 51.789 51.612 51.891 -0.43367 31 13 3 0 0 0 0.73115 1 28233 28233 0.45452 0 1 2651000 67911 10848 45139 46157 79375 79375 -0.06448036361166487 VDNYLHWAE 9 Unmodified _VDNYLHWAE_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7637939453125 2 573.764363 1145.51417 1.0291 0.00059048 0.10274 5.8947E-05 1.1319 0.00064943 573.7640736542994 50.531 0.65834 50.477 50.164 50.823 -0.053871 78 32 3 0 0 0 0.14 1 27363 27363 29.082 1.4528 1 5693000 + 67912 19010 45140 46158 79376 79376 -0.052763219418238805 VDNYLHWAE 9 Unmodified _VDNYLHWAE_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7650146484375 2 573.764363 1145.51417 0.4422 0.00025372 0.62516 0.0003587 1.0674 0.00061242 573.764553598254 56.01 0.73488 50.088 49.525 50.26 -5.9211 68 43 2 0 0 0 0.41742 1 35665 35665 11.64 0.84079 1 55429000 + 67913 19010 45140 46158 79377 79377 -0.052763219418238805 VDPCYLAY 8 Unmodified _VDPCYLAY_ 0 0 0 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 REV__nc|ENSG00000091622|Q9BZ71-2|PITPNM3 MSMS AL20221201_MKP_PDAC_01 4 472.2148132324219 2 472.215129 942.415705 NaN NaN NaN NaN NaN NaN NaN 54.901 1 49.035 48.535 49.535 -5.8653 0 0 0 0.85111 1 34878 34878 20.871 0 1 + 67914 17896 45141 46159 79378 79378 -0.057806415112281684 VDPHLRLF 8 Unmodified _VDPHLRLF_ 0 0 0 REV__ENSG00000162040|ENST00000454677|HS3ST6 REV__ENSG00000162040|ENST00000454677|HS3ST6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7392272949219 2 498.784902 995.55525 -0.95318 -0.00047543 2.3904 0.0011923 1.4372 0.00071687 498.7856406363616 77.827 0.4231 77.344 76.998 77.421 -0.4826 34 20 3 0 0 0 8.7369 1 42466 42466 5.2307 2.3415 1 1583400 + 67915 21620 45142 46160 79379 79379 0.05729483888319464 VDPIEYLAL 9 Unmodified _VDPIEYLAL_ 0 0 0 ENSG00000170788|ENST00000372202|DYDC1;nc|ENSG00000170788|Q8WWB3-2|DYDC1 ENSG00000170788|ENST00000372202|DYDC1 ENSG00000170788|ENST00000372202|DYDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.564086914062 1 1032.56119 1031.55391 -0.35515 -0.00036672 -0.012536 -1.2944E-05 -0.36769 -0.00037966 1032.5607414261247 90.381 0.95052 90.381 90.02 90.971 0 60 53 2 0 0 0 0.62242 1 50195 50195 0 0 1 799790 67916 8024 45143 46161 79380 79380 0.03939805008872099 VDPPCFDVTSK 11 Unmodified _VDPPCFDVTSK_ 0 0 0 REV__ENST00000369478.3_1_1:117311417-117311705:+|nuORF REV__ENST00000369478.3_1_1:117311417-117311705:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.192626953125 3 403.193635 1206.55907 NaN NaN NaN NaN NaN NaN NaN 41.761 1 41.761 41.261 42.261 0 0 0 0 0.92174 1 22555 22555 6.2344 1.1868 1 + 67917 26036 45144 46162 79381 79381 -0.03594259190799676 VDPQAYQWLF 10 Unmodified _VDPQAYQWLF_ 0 0 0 ENST00000300584.7_1_15:78290103-78290292:-|nuORF ENST00000300584.7_1_15:78290103-78290292:-|nuORF ENST00000300584.7_1_15:78290103-78290292:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.8771667480469 3 422.876634 1265.60807 1.1777 0.00049801 0.42985 0.00018177 1.6075 0.00067979 422.8765104568079 55.525 0.71479 49.604 49.459 50.174 -5.9211 65 42 2 0 0 0 0.67046 1 35468 35468 6.1918 0.78914 1 27315000 67918 11552 45145 46163 79382 79382 -0.014106028395417525 VDPYDMPGTS 10 Unmodified _VDPYDMPGTS_ 0 0 0 nc|ENSG00000125740|P53539-6|FOSB;nc|ENSG00000125740|P53539-5|FOSB;nc|ENSG00000125740|P53539-2|FOSB;nc|ENSG00000125740|P53539-11|FOSB;nc|ENSG00000125740|P53539-7|FOSB;nc|ENSG00000125740|P53539-4|FOSB;nc|ENSG00000125740|P53539-3|FOSB;ENSG00000125740|ENST00000353609|FOSB;nc|ENSG00000125740|P53539-10|FOSB nc|ENSG00000125740|P53539-6|FOSB nc|ENSG00000125740|P53539-6|FOSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.1557312011719 3 361.155069 1080.44338 0.70479 0.00025454 0.81496 0.00029433 1.5198 0.00054887 361.15528974719825 62.318 0.25462 61.83 61.681 61.936 -0.48764 17 11 2 0 0 0 0.71276 1 33957 33957 0.62683 0 1 788160 67919 16173 45146 46164 79383 79383 -0.09362783041638068 VDPYKTEQF 9 Unmodified _VDPYKTEQF_ 0 0 0 REV__ENSG00000133937|ENST00000238558|GSC REV__ENSG00000133937|ENST00000238558|GSC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7740478515625 2 563.774396 1125.53424 0.30732 0.00017326 1.0427 0.00058787 1.3501 0.00076113 563.7751940479765 80.873 0.25928 80.873 80.745 81.004 0 19 11 2 0 0 0 0.54444 1 44897 44897 4.756 0 1 417410 + 67920 19940 45147 46165 79384 79384 -0.02350571001852586 VDQLHGVL 8 Unmodified _VDQLHGVL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8681945800781 2 440.747985 879.481417 0.53257 0.00023473 2.3576 0.0010391 2.8902 0.0012738 440.7491733210777 46.513 0.25606 46.176 46.034 46.29 -0.33664 19 12 2 0 0 0 8.7369 1 24862 24862 28.487 0 1 4728400 67921 4151 45148 46166 79385 79385 0.03685515726010635 VDQLHGVL 8 Unmodified _VDQLHGVL_ 0 0 0 nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 nc|ENSG00000129566|Q99973-2|TEP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 440.747985 879.481417 1.0271 0.00045271 3.4769 0.0015324 4.504 0.0019851 440.7507125261098 46.281 0.18607 46.248 46.081 46.267 -0.033417 0.035767 0.00085619 NaN 21.747 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1727300 67922 4151 45148 46166 0.03685515726010635 VDQNEISSEEL 11 Unmodified _VDQNEISSEEL_ 0 0 0 REV__ENSG00000065060|ENST00000192788|BLTP3A REV__ENSG00000065060|ENST00000192788|BLTP3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.79150390625 2 631.790972 1261.56739 NaN NaN NaN NaN NaN NaN NaN 41.105 1 40.802 40.302 41.302 -0.30304 0 0 0 0.73356 1 21758 21758 15.248 1.3424 1 + 67923 17370 45149 46167 79386 79386 -0.052930337404632155 VDQSFYHDTH 10 Unmodified _VDQSFYHDTH_ 0 0 0 REV__ENSG00000008300|ENST00000164024|CELSR3 REV__ENSG00000008300|ENST00000164024|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.768310546875 2 624.767634 1247.52072 0.25558 0.00015968 -0.053931 -3.3695E-05 0.20165 0.00012598 624.7680696835852 76.433 0.46227 76.433 76.2 76.663 0 65 18 5 0 0 0 0.46514 2 42526 42427;42526 18.146 3.3081 1 9069900 + 67924 17022 45150 46168 79387;79388 79388 -0.093144287810901 VDQVSSPA 8 Unmodified _VDQVSSPA_ 0 0 0 REV__ENST00000573151.5_1_19:52206422-52207434:+|nuORF REV__ENST00000573151.5_1_19:52206422-52207434:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3929443359375 1 802.394124 801.386848 0.0072843 5.8449E-06 -2.7695 -0.0022223 -2.7623 -0.0022164 802.3919714692918 51.737 0.2833 51.737 51.54 51.823 0 19 12 2 0 0 0 0.38465 1 28573 28573 46.021 3.9264 1 1772100 + 67925 28994 45151 46169 79389 79389 -0.02179042815998855 VDRATCLR 8 Unmodified _VDRATCLR_ 0 0 0 nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9 nc|ENSG00000101981|P00740-2|F9 nc|ENSG00000101981|P00740-2|F9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2501220703125 2 467.250369 932.486184 0.36073 0.00016855 -0.32903 -0.00015374 0.031703 1.4813E-05 467.2499470764599 92.65 0.10777 92.193 92.149 92.257 -0.4574 8 4 2 0 0 0 0.81107 1 50663 50663 0 0 1 221450 67926 2005 45152 46170 79390 79390 0.01724076597088242 VDREYRLQYQW 11 Unmodified _VDREYRLQYQW_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 778.38427734375 2 778.386239 1554.75793 -0.43853 -0.00034134 -2.6779 -0.0020845 -3.1165 -0.0024258 778.383632074899 60.758 0.36407 60.269 60.01 60.374 -0.48932 26 17 2 0 0 0 0.73115 1 33059 33059 1.3295 0.9789 1 2750600 + 67927 17354 45153 46171 79391 79391 0.002737174322874125 VDREYRLQYQW 11 Unmodified _VDREYRLQYQW_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 778.386239 1554.75793 0.34897 0.00027164 -2.9173 -0.0022708 -2.5683 -0.0019991 778.3839253311874 60.04 0.76828 60.04 59.532 60.301 0 -0.11442 -0.00010034 NaN 1.3295 59 34 3 NaN NaN NaN NaN 0 NaN NaN 0 2281700 + 67928 17354 45153 46171 0.002737174322874125 VDREYRLQYQW 11 Unmodified _VDREYRLQYQW_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 778.386239 1554.75793 -0.43853 -0.00034134 -2.6779 -0.0020845 -3.1165 -0.0024258 778.383632074899 60.758 0.36407 60.269 60.01 60.374 -0.48932 0.11442 0.00027229 NaN 1.3295 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2750600 + 67929 17354 45153 46171 0.002737174322874125 VDRHIVSL 8 Unmodified _VDRHIVSL_ 0 0 0 REV__nc|ENSG00000034152|P46734-2|MAP2K3 REV__nc|ENSG00000034152|P46734-2|MAP2K3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.775146484375 2 469.774534 937.534515 1.0397 0.0004884 -0.31412 -0.00014757 0.72554 0.00034084 469.77448762468066 41.618 0.43177 37.01 36.788 37.22 -4.6079 40 28 2 0 0 0 0.70294 1 25106 25106 16.942 0 1 21888000 + 67930 17159 45154 46172 79392 79392 0.06324893508644891 VDRLVHLM 8 Unmodified _VDRLVHLM_ 0 0 0 ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 ENSG00000078142|ENST00000262039|PIK3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7786560058594 2 491.778762 981.542971 1.0079 0.00049568 -1.3079 -0.00064318 -0.29992 -0.00014749 491.77790076117117 70.409 0.58402 70.445 70.271 70.855 0.035515 64 26 4 0 0 0 0.80624 1 38716 38716 2.8892 2.8892 1 10924000 67931 1239 45155 46173 79393 79393 0.05146124153623077 VDRTAQVVY 9 Unmodified _VDRTAQVVY_ 0 0 0 REV__nc|ENSG855|P10266|ERVK-10_pol REV__nc|ENSG855|P10266|ERVK-10_pol MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.7848510742188 2 525.782556 1049.55056 0.97121 0.00051065 -0.16771 -8.8181E-05 0.8035 0.00042246 525.7844746310664 70.764 1.0498 70.8 70.312 71.361 0.035507 165 47 5 0 0 0 0.07916 1 38981 38981 37.974 11.09 1 6905300 + 67932 30044 45156 46174 79394 79394 0.027765549549030766 VDSDAADTAS 10 Unmodified _VDSDAADTAS_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1993713378906 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 4.511 1 4.5047 4.0047 5.0047 -0.0062971 0 0 0 1.0061 1 2281 2281 0 0 1 67933 6322 45157 46175 79395 79395 -0.09429177100389552 VDSDAADTAS 10 Unmodified _VDSDAADTAS_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1986999511719 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 7.5175 1 7.5327 7.0327 8.0327 0.015238 0 0 0 1.0061 1 3750 3750 0 0 1 67934 6322 45157 46175 79396 79396 -0.09429177100389552 VDSDAADTAS 10 Unmodified _VDSDAADTAS_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.198974609375 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 11.284 1 11.299 10.799 11.799 0.015327 0 0 0 1.0061 1 5571 5571 0 0 1 67935 6322 45157 46175 79397 79397 -0.09429177100389552 VDSDAADTAS 10 Unmodified _VDSDAADTAS_ 0 0 0 nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN nc|ENSG00000154358|Q5VST9|OBSCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1983642578125 2 476.198719 950.382884 NaN NaN NaN NaN NaN NaN NaN 12.323 1 12.335 11.835 12.835 0.012355 0 0 0 1.0061 1 6077 6077 0 0 1 67936 6322 45157 46175 79398 79398 -0.09429177100389552 VDSFPYLRGL 10 Unmodified _VDSFPYLRGL_ 0 0 0 ENSG00000148468|ENST00000378116|FAM171A1 ENSG00000148468|ENST00000378116|FAM171A1 ENSG00000148468|ENST00000378116|FAM171A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8142700195312 2 583.813856 1165.61316 0.72974 0.00042603 1.2705 0.00074172 2.0002 0.0011678 583.8155029641937 77.967 1.0607 71.791 71.065 72.126 -6.1757 130 60 4 0 0 0 0.54684 1 50574 50574 13.906 0 1 40865000 67937 5936 45158 46176 79399 79399 0.03697701023111222 VDSIFSESEKR 11 Unmodified _VDSIFSESEKR_ 0 0 0 ENSG00000145390|ENST00000692078|USP53;ENST00000510852.1_1_4:120188537-120193190:+|nuORF ENSG00000145390|ENST00000692078|USP53 ENSG00000145390|ENST00000692078|USP53 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8848571777344 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 34.231 1 34.231 33.731 34.731 0 0 0 0 0.9428 1 18018 18018 0.50596 0.051438 1 67938 5693 45159 46177 79400 79400 -0.00024744369966356317 VDTCVGTS 8 Unmodified _VDTCVGTS_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.1734924316406 2 391.173461 780.332369 NaN NaN NaN NaN NaN NaN NaN 83.208 1 77.033 76.533 77.533 -6.1757 0 0 0 0.65904 1 54710 54710 30.225 7.0764 1 67939 2474 45160 46178 79401 79401 -0.06658377959058726 VDTGIFLVD 9 Unmodified _VDTGIFLVD_ 0 0 0 REV__nc|ENSG00000012171|Q13214-2|SEMA3B REV__nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 978.514404296875 1 978.514239 977.506963 0.11202 0.00010961 0.45352 0.00044378 0.56554 0.00055339 978.514701888164 90.59 0.20755 90.59 90.513 90.72 0 11 8 2 0 0 0 0.30562 1 50127 50127 16.942 5.302 1 523140 + 67940 17063 45161 46179 79402 79402 0.017309454577684846 VDTHFASQEF 10 Unmodified _VDTHFASQEF_ 0 0 0 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.7671508789062 2 590.767103 1179.51965 NaN NaN NaN NaN NaN NaN NaN 41.6 1 41.599 41.099 42.099 -0.0017929 0 0 0 0.83398 1 22242 22242 10.824 2.0785 1 67941 10011 45162 46180 79403 79403 -0.06292643150004551 VDTPSQVL 8 Unmodified _VDTPSQVL_ 0 0 0 REV__ENSG00000154240|ENST00000535342|CEP112 REV__ENSG00000154240|ENST00000535342|CEP112 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 858.4576416015625 1 858.456724 857.449448 0.16606 0.00014255 0.53415 0.00045855 0.70021 0.0006011 858.4572212142778 75.307 0.36572 75.307 75.111 75.476 0 30 20 2 0 0 0 0.65867 1 41906 41906 20.871 5.103 1 1132400 + 67942 21217 45163 46181 79404 79404 0.015021032522099631 VDVHGTGM 8 Unmodified _VDVHGTGM_ 0 0 0 REV__ENSG00000110851|ENST00000228437|PRDM4 REV__ENSG00000110851|ENST00000228437|PRDM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.18896484375 2 408.189445 814.364338 NaN NaN NaN NaN NaN NaN NaN 17.293 1 17.293 16.793 17.793 0 0 0 0 0.97444 1 8509 8509 2.5775 0 1 + 67943 18725 45164 46182 79405 79405 -0.050269654852627355 VDVITEYVK 9 Unmodified _VDVITEYVK_ 0 0 0 nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1066.579467773438 1 1065.58265 1064.57538 -0.42729 -0.00045531 -0.59397 -0.00063292 -1.0213 -0.0010882 1065.5823224116918 76.029 0.6982 76.029 75.77 76.468 0 70 30 3 0 0 0 0.61256 1 42491 42491 0.6015 0 1 21597000 67944 16658 45165 46183 79406 79406 0.04567190037596447 VDVITEYVK 9 Unmodified _VDVITEYVK_ 0 0 0 nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1065.58265 1064.57538 -0.42729 -0.00045531 -0.59397 -0.00063292 -1.0213 -0.0010882 1065.5823224116918 76.029 0.6982 76.029 75.77 76.468 0 0.00066996 7.2835E-05 NaN 0.6015 70 30 3 NaN NaN NaN NaN 0 NaN NaN 0 21597000 67945 16658 45165 46183 0.04567190037596447 VDVITEYVK 9 Unmodified _VDVITEYVK_ 0 0 0 nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1065.58265 1064.57538 -0.078502 -8.365E-05 -0.67634 -0.0007207 -0.75484 -0.00080435 1065.5818231878127 76.484 0.69161 76.004 75.787 76.479 -0.47945 -0.023653 -1.4941E-05 NaN 0.6015 107 38 4 NaN NaN NaN NaN 0 NaN NaN 0 49841000 67946 16658 45165 46183 0.04567190037596447 VDVITEYVK 9 Unmodified _VDVITEYVK_ 0 0 0 nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag nc|ENSG829|Q9HDB9|ERVK-5_gag MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1065.58265 1064.57538 0.55481 0.0005912 -0.85214 -0.00090803 -0.29733 -0.00031683 1065.58122609854 76.003 0.29309 76.051 75.84 76.133 0.047943 0.022983 -0.00020227 NaN 0.6015 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 9133000 67947 16658 45165 46183 0.04567190037596447 VDVNQIEISY 10 Unmodified _VDVNQIEISY_ 0 0 0 REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF REV__ENST00000479431.1_1_11:131781360-132016587:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.298828125 2 590.298236 1178.58192 0.95157 0.00056171 0.634 0.00037425 1.5856 0.00093596 590.2984775250394 79.985 0.35579 79.496 79.333 79.689 -0.48932 31 13 3 0 0 0 0.48505 1 43887 43887 17.113 3.2068 1 4949100 + 67948 27655 45166 46184 79407 79407 -0.00022916801663086517 VDVRRAREF 9 Unmodified _VDVRRAREF_ 0 0 0 REV__ENST00000562245.5_1_11:90279940-90280045:+|nuORF REV__ENST00000562245.5_1_11:90279940-90280045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.95458984375 2 574.320171 1146.62579 0.28564 0.00016405 2.0708 0.0011893 2.3564 0.0013533 574.321922079521 65.336 0.27753 65.336 65.169 65.447 0 15 10 2 0 0 0 0.54444 1 36426 36426 4.756 0.81161 1 427580 + 67949 28853 45167 46185 79408 79408 0.058341572059816826 VDWDEWKYY 9 Unmodified _VDWDEWKYY_ 0 0 0 ENST00000411846.6_1_1:108815923-108880006:+|nuORF ENST00000411846.6_1_1:108815923-108880006:+|nuORF ENST00000411846.6_1_1:108815923-108880006:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 652.7855224609375 2 652.285128 1302.5557 -0.00097572 -6.3644E-07 -2.248 -0.0014663 -2.249 -0.001467 652.283467431522 50.461 0.20971 50.461 50.35 50.56 0 21 9 3 0 0 0 0.41742 1 27827 27827 11.64 0 1 3494100 67950 12981 45168 46186 79409 79409 -0.08347185973138949 VDWDEWKYY 9 Unmodified _VDWDEWKYY_ 0 0 0 ENST00000411846.6_1_1:108815923-108880006:+|nuORF ENST00000411846.6_1_1:108815923-108880006:+|nuORF ENST00000411846.6_1_1:108815923-108880006:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 652.285128 1302.5557 0.12789 8.3422E-05 -1.0362 -0.0006759 -0.90831 -0.00059247 652.2847989779053 51.121 0.22174 50.708 50.576 50.798 -0.41351 0.12336 0.0012224 NaN 11.64 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1353500 67951 12981 45168 46186 -0.08347185973138949 VDWHRHDNRH 10 Unmodified _VDWHRHDNRH_ 0 0 0 ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 ENSG00000135049|ENST00000357081|AGTPBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.88525390625 3 457.885297 1370.63406 NaN NaN NaN NaN NaN NaN NaN 20.186 1 20.197 19.697 20.697 0.010553 0 0 0 1.0061 1 10289 10289 0 0 1 67952 4664 45169 46187 79410 79410 -0.0364289582469155 VDWHSDDEP 9 Unmodified _VDWHSDDEP_ 0 0 0 ENST00000530803.5_1_11:43918877-43940621:+|nuORF;ENST00000532962.5_1_11:43918877-43941557:+|nuORF;ENSG00000166199|ENST00000302708|ALKBH3 ENST00000530803.5_1_11:43918877-43940621:+|nuORF ENST00000530803.5_1_11:43918877-43940621:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2183227539062 2 550.219985 1098.42542 NaN NaN NaN NaN NaN NaN NaN 1.5962 1 1.5229 1.0229 2.0229 -0.07329 0 0 0 0.85798 1 799 799 0.52476 0 1 67953 7450 45170 46188 79411 79411 -0.11985781972134646 VDWLGLTAL 9 Unmodified _VDWLGLTAL_ 0 0 0 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 REV__nc|ENSG00000197121|Q75T13-4|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2811889648438 2 494.279118 986.543683 0.83107 0.00041078 0.13152 6.5007E-05 0.96259 0.00047579 494.27914793228945 82.089 0.71244 81.593 81.392 82.104 -0.4952 67 28 4 0 0 0 0.49272 1 45119 45119 7.9102 1.187 1 11918000 + 67954 23895 45171 46189 79412 79412 0.04987242074309961 VDWRDFMCN 9 Unmodified _VDWRDFMCN_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.1963806152344 3 395.832043 1184.4743 0.84433 0.00033421 1.5731 0.00062267 2.4174 0.00095688 395.8328122581419 28.421 0.16751 25.273 25.212 25.38 -3.1482 12 8 2 0 0 0 0.21473 1 15882 15882 0.96228 0 1 5354100 67955 5089 45172 46190 79413 79413 -0.11055908208390974 VDYFHQCF 8 Unmodified _VDYFHQCF_ 0 0 0 ENST00000379391.7_2_12:57451973-57452108:-|nuORF ENST00000379391.7_2_12:57451973-57452108:-|nuORF ENST00000379391.7_2_12:57451973-57452108:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.8180541992188 3 353.48486 1057.43275 NaN NaN NaN NaN NaN NaN NaN 15.634 1 15.634 15.134 16.134 0 0 0 0 0.97444 1 7547 7547 0.45834 0 1 67956 12567 45173 46191 79414 79414 -0.09366720905404691 VDYKNYLHEW 10 Unmodified _VDYKNYLHEW_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.5535583496094 3 456.21906 1365.63535 0.6099 0.00027825 0.50002 0.00022812 1.1099 0.00050636 456.55352062312363 74.624 0.26062 74.148 73.997 74.258 -0.47588 23 10 3 0 0 0 0.71123 1 40851 40851 0.69767 0.24315 1 721610 67957 9115 45174 46192 79415 79415 -0.032841192991554635 VDYSDPEPTF 10 Unmodified _VDYSDPEPTF_ 0 0 0 REV__ENSG00000148335|ENST00000372483|NTMT1 REV__ENSG00000148335|ENST00000372483|NTMT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.21630859375 2 585.253494 1168.49243 0.42247 0.00024725 1.0787 0.00063132 1.5012 0.00087856 585.2542505449446 59.922 0.69642 59.922 59.649 60.345 0 96 31 4 0 0 0 0.23227 1 33275 33275 3.5965 0 1 40234000 + 67958 20939 45175 46193 79416 79416 -0.08507171481051046 VDYTGAREGQH 11 Unmodified _VDYTGAREGQH_ 0 0 0 REV__ENST00000567930.1_1_16:58715592-58717997:-|nuORF REV__ENST00000567930.1_1_16:58715592-58717997:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.195068359375 3 411.526664 1231.55816 -0.79379 -0.00032666 -0.027884 -1.1475E-05 -0.82167 -0.00033814 411.5266969898555 28.432 0.22849 28.432 28.292 28.52 0 18 13 2 0 0 0 0.73389 1 14718 14718 0.36667 0 1 3470500 + 67959 28937 45176 46194 79417 79417 -0.04835337515487481 VDYWDKDVRQ 10 Unmodified _VDYWDKDVRQ_ 0 0 0 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 nc|ENSG00000182077|Q3KNS1|PTCHD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.8828430175781 3 441.882448 1322.62551 NaN NaN NaN NaN NaN NaN NaN 17.431 1 17.436 16.936 17.936 0.0050564 0 0 0 1.0019 1 8792 8792 0.15932 0 1 67960 16435 45177 46195 79418 79418 -0.02289307304522481 VEAEDRYKSEL 11 Unmodified _VEAEDRYKSEL_ 0 0 0 ENSG00000249961|ENST00000433154|TERB1 ENSG00000249961|ENST00000433154|TERB1 ENSG00000249961|ENST00000433154|TERB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 669.8302612304688 2 669.830431 1337.64631 -1.2922 -0.00086559 -0.41322 -0.00027679 -1.7055 -0.0011424 669.8303111646796 32.598 0.19618 32.598 32.481 32.677 0 21 10 3 0 0 0 0.35681 1 17033 17033 23.79 0 1 3928400 67961 10749 45178 46196 79419 79419 -0.009007617155248226 VEAFKENETIW 11 Unmodified _VEAFKENETIW_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 683.3341674804688 2 683.337892 1364.66123 NaN NaN NaN NaN NaN NaN NaN 32.199 1 32.199 31.699 32.699 0 0 0 0 0.72333 1 16803 16803 15.739 1.3332 1 + 67962 18965 45179 46197 79420 79420 -0.0065126984752623684 VEAGGATVFP 10 Unmodified _VEAGGATVFP_ 0 0 0 ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 ENSG00000072682|ENST00000360568|P4HA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2454833984375 2 474.245275 946.475997 0.76529 0.00036294 1.0015 0.00047497 1.7668 0.00083791 474.24563965599526 41.186 0.28323 36.578 36.387 36.671 -4.6079 26 17 2 0 0 0 0.18021 1 24747 24747 36.127 36.127 1 12809000 67963 1090 45180 46198 79421 79421 0.0006179214351504925 VEAGGSFGAY 10 Unmodified _VEAGGSFGAY_ 0 0 0 ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB ENSG00000125817|ENST00000379751|CENPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2188720703125 2 479.219257 956.423961 0.16466 7.891E-05 -1.4567 -0.00069808 -1.292 -0.00061917 479.2188577189434 61.896 0.40275 61.896 61.641 62.044 0 29 17 2 0 0 0 0.52888 1 34541 34541 14.838 0.25658 1 2014200 67964 3887 45181 46199 79422 79422 -0.05599371270238862 VEAGSQVLQV 10 Unmodified _VEAGSQVLQV_ 0 0 0 REV__nc|ENSG00000211934|P23083|IGHV1-2 REV__nc|ENSG00000211934|P23083|IGHV1-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.78369140625 2 515.282389 1028.55022 0.62554 0.00032233 0.82825 0.00042678 1.4538 0.00074911 515.2831922591375 57.288 0.28707 57.288 57.156 57.443 0 28 12 3 0 0 0 0.13391 1 31864 31864 41.84 0 1 5058700 + 67965 29934 45182 46200 79423 79423 0.037091352350216766 VEAGSSNADVL 11 Unmodified _VEAGSSNADVL_ 0 0 0 REV__ENSG00000086570|ENST00000261800|FAT2 REV__ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2564697265625 2 531.259111 1060.50367 NaN NaN NaN NaN NaN NaN NaN 63.549 1 63.063 62.563 63.563 -0.48617 0 0 0 0.89305 1 34658 34658 7.609 0.31972 1 + 67966 17769 45183 46201 79424 79424 -0.02416349386908223 VEAISLSIL 9 Unmodified _VEAISLSIL_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5685424804688 1 944.566275 943.558998 0.55624 0.00052541 -0.42272 -0.00039928 0.13353 0.00012612 944.5657911101525 82.324 0.38294 81.829 81.606 81.989 -0.4952 23 15 2 0 0 0 0.39863 1 45131 45131 12.532 0 1 1417900 67967 10311 45184 46202 79425 79425 0.08496108871520391 VEALFDSGEK 10 Unmodified _VEALFDSGEK_ 0 0 0 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant;ENSG00000182261|ENST00000691676|NLRP10 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7711791992188 2 547.771854 1093.52915 -0.50389 -0.00027602 0.1635 8.9559E-05 -0.34039 -0.00018646 547.7719417960548 33.039 0.26072 33.039 32.889 33.15 0 19 12 2 0 0 0 0.1899 1 17299 17299 34.932 3.6637 1 2873100 67968 9039 45185 46203 79426 79426 -0.013868748644881634 VEAMWLMLQND 11 Unmodified _VEAMWLMLQND_ 0 0 0 nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS;ENST00000531690.5_1_6:1717847-1960173:-|nuORF nc|ENSG00000112699|O60547-2|GMDS nc|ENSG00000112699|O60547-2|GMDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8167724609375 2 675.315048 1348.61554 0.21963 0.00014832 0.11696 7.8984E-05 0.33659 0.00022731 675.8168606021569 36.943 0.21919 36.943 36.837 37.056 0 25 10 3 0 0 0 0.37825 1 19635 19635 22.658 9.6156 1 2778500 67969 2911 45186 46204 79427 79427 -0.04481954625771323 VEAPLFTLY 9 Unmodified _VEAPLFTLY_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.128295898438 1 1052.56627 1051.559 0.23235 0.00024457 -0.80595 -0.00084831 -0.57359 -0.00060374 1053.5681528995012 98.102 0.19704 97.859 97.749 97.946 -0.24277 9 6 2 0 0 0 0.21473 1 53523 53523 4.3292 0 1 1195900 + 67970 18965 45187 46205 79428 79428 0.03528108871546465 VEAPLFTLY 9 Unmodified _VEAPLFTLY_ 0 0 0 REV__ENSG00000115267|ENST00000649979|IFIH1 REV__ENSG00000115267|ENST00000649979|IFIH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1052.56627 1051.559 3.677 0.0038703 3.7527 0.0039499 7.4297 0.0078202 1052.5694861527 97.796 0.24844 97.778 97.651 97.9 -0.018188 -0.040404 0.0033609 NaN 4.3292 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 4073400 + 67971 18965 45187 46205 0.03528108871546465 VEAPLVLCL 9 Unmodified _VEAPLVLCL_ 0 0 0 ENST00000396593.6_2_16:8948948-8949014:-|nuORF ENST00000396593.6_2_16:8948948-8949014:-|nuORF ENST00000396593.6_2_16:8948948-8949014:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7771606445312 2 478.777896 955.54124 0.46147 0.00022094 -1.1043 -0.00052872 -0.64284 -0.00030778 478.7770341611758 98.628 0.26781 98.435 98.332 98.599 -0.19321 20 8 3 0 0 0 0.41742 1 53863 53863 11.64 2.2929 1 1950600 67972 12799 45188 46206 79429 79429 0.06169070345004002 VEARSSKFI 9 Unmodified _VEARSSKFI_ 0 0 0 REV__ENST00000504549.5_1_5:179044963-179045371:-|nuORF REV__ENST00000504549.5_1_5:179044963-179045371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.297119140625 2 518.792924 1035.57129 0.37113 0.00019254 -0.87571 -0.00045431 -0.50458 -0.00026177 518.7927752412891 61.959 0.37582 61.472 61.284 61.66 -0.48764 61 17 6 0 0 0 0.39863 1 33803 33803 12.532 1.7076 1 18353000 + 67973 19569 45189 46207 79430 79430 0.05493145334571636 VEAVTGACVE 10 Unmodified _VEAVTGACVE_ 0 0 0 REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B REV__nc|ENSG00000162849|Q2KJY2-2|KIF26B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4573974609375 1 977.460823 976.453547 0.44727 0.00043719 -3.0292 -0.002961 -2.582 -0.0025238 977.4572733674526 57.52 0.2081 57.52 57.324 57.532 0 14 8 2 0 0 0 0.44373 1 31960 31960 19.257 2.3147 1 2877200 + 67974 21697 45190 46208 79431 79431 -0.03562175316403682 VECERSGSITY 11 Unmodified _VECERSGSITY_ 0 0 0 REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4 REV__nc|ENSG00000176204|Q86VH4-2|LRRTM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.2854614257812 2 622.284802 1242.55505 0.33398 0.00020783 1.3803 0.00085893 1.7143 0.0010668 622.284849772626 77.193 0.3134 77.243 77.033 77.346 0.05011 38 12 4 0 0 0 0.39949 1 42577 42577 21.537 10.042 1 3227000 + 67975 29799 45191 46209 79432 79432 -0.05652348684498065 VECGCCLCWCC 11 Unmodified _VECGCCLCWCC_ 0 0 0 REV__ENST00000534656.2_1_11:118868886-118869820:+|nuORF REV__ENST00000534656.2_1_11:118868886-118869820:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.1884155273438 2 611.188036 1220.36152 NaN NaN NaN NaN NaN NaN NaN 3.2271 1 3.2271 2.7271 3.7271 0 0 0 0 0.9435 1 1565 1565 0 0 1 + 67976 23557 45192 46210 79433 79433 -0.23984707584259013 VECLRFLV 8 Unmodified _VECLRFLV_ 0 0 0 nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5465087890625 1 978.544099 977.536823 0.44769 0.00043809 -0.35902 -0.00035131 0.088677 8.6775E-05 978.5431109704128 27.978 0.13799 27.932 27.846 27.984 -0.046408 6 4 2 0 0 0 0.80624 1 14443 14443 2.8892 0 1 4322300 67977 594 45193 46211 79434 79434 0.04715605922103805 VEDARRRK 8 Unmodified _VEDARRRK_ 0 0 0 REV__ENSG00000196436|ENST00000692376|NPIPB15 REV__ENSG00000196436|ENST00000692376|NPIPB15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7635498046875 2 515.299239 1028.58392 0.34821 0.00017943 1.481 0.00076317 1.8292 0.0009426 515.3000246676768 59.202 0.25875 59.202 59.004 59.262 0 24 10 3 0 0 0 8.7369 1 33013 33013 13.508 2.684 1 2597100 + 67978 23827 45194 46212 79435 79435 0.07077601517471521 VEDDAAACDTF 11 Unmodified _VEDDAAACDTF_ 0 0 0 REV__nc|ENSG00000163412|Q8N5X7-2|EIF4E3 REV__nc|ENSG00000163412|Q8N5X7-2|EIF4E3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.7994384765625 2 578.726786 1155.43902 1.4212 0.00082249 -1.4111 -0.00081663 0.01012 5.8565E-06 578.726523594212 58.991 0.41541 52.916 52.702 53.117 -6.0745 71 22 4 0 0 0 0.29564 1 37756 37756 9.3831 1.473 1 52888000 + 67979 21762 45195 46213 79436 79436 -0.132482922552299 VEDENDHAPTF 11 Unmodified _VEDENDHAPTF_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.2708740234375 2 637.270207 1272.52586 0.46162 0.00029418 -1.1992 -0.00076423 -0.7376 -0.00047005 637.2693098744668 46.003 0.39207 41.048 40.863 41.255 -4.9549 46 25 2 0 0 0 0.5229 1 28271 28271 15.248 1.3424 1 11765000 67980 7473 45196 46214 79437 79437 -0.09950169709168222 VEDENDHAPTF 11 Unmodified _VEDENDHAPTF_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 637.270207 1272.52586 -0.18401 -0.00011726 -1.8218 -0.001161 -2.0058 -0.0012783 637.2689666150835 41.219 0.21046 40.916 40.798 41.009 -0.30304 -0.066073 -0.00031798 NaN 15.248 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 6123500 67981 7473 45196 46214 -0.09950169709168222 VEDENDHAPTF 11 Unmodified _VEDENDHAPTF_ 0 0 0 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 ENSG00000166341|ENST00000299441|DCHS1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 637.270207 1272.52586 0.46162 0.00029418 -1.1992 -0.00076423 -0.7376 -0.00047005 637.2693098744668 46.003 0.39207 41.048 40.863 41.255 -4.9549 0.066073 0.00047554 NaN 15.248 46 25 2 NaN NaN NaN NaN 0 NaN NaN 0 11765000 67982 7473 45196 46214 -0.09950169709168222 VEDKDAVAF 9 Unmodified _VEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2472839355469 2 497.248015 992.481476 -0.13378 -6.6522E-05 -0.038287 -1.9038E-05 -0.17207 -8.556E-05 497.248166249269 35.383 0.30744 35.383 35.227 35.534 0 19 15 2 0 0 0 0.078314 1 18701 18701 38.176 6.9072 1 4168600 67983 2314;1437;3789;1275 45197 46215 79438 79438 -0.015065290646703033 VEDKDAVAF 9 Unmodified _VEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.24755859375 2 497.248015 992.481476 NaN NaN NaN NaN NaN NaN NaN 40.932 1 40.932 40.432 41.432 0 0 0 0 0.068038 1 22036 22036 51.63 13.656 1 67984 2314;1437;3789;1275 45197 46215 79439 79439 -0.015065290646703033 VEDKDAVAF 9 Unmodified _VEDKDAVAF_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;ENSG00000105388|ENST00000221992|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENST00000403136.1_1_19:43025413-43032607:-|nuORF;nc|ENSG00000079385|P13688-4|CEACAM1;ENST00000344391.9_1_19:43023158-43032553:-|nuORF;nc|ENSG00000079385|P13688-11|CEACAM1;nc|ENSG00000079385|P13688-9|CEACAM1;nc|ENSG00000079385|P13688-2|CEACAM1;nc|ENSG00000079385|P13688-6|CEACAM1;ENST00000377806.7_1_19:43023094-43032607:-|nuORF;nc|ENSG00000079385|P13688-5|CEACAM1;nc|ENSG00000079385|P13688-8|CEACAM1;nc|ENSG00000079385|P13688-10|CEACAM1;ENSG00000079385|ENST00000161559|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 ENSG00000086548|ENST00000199764|CEACAM6;nc|ENSG00000105388|P06731-2|CEACAM5;nc|ENSG00000079385|P13688-3|CEACAM1;ENSG00000124469|ENST00000244336|CEACAM8 nc|ENSG00000105388|P06731-2|CEACAM5 MSMS AL20221201_MKP_PDAC_01 4 497.2485656738281 2 497.248015 992.481476 NaN NaN NaN NaN NaN NaN NaN 46.533 1 41.453 40.953 41.953 -5.0805 0 0 0 0.08368 1 28769 28769 47.594 14.809 1 67985 2314;1437;3789;1275 45197 46215 79440 79440 -0.015065290646703033 VEDLEDYLL 9 Unmodified _VEDLEDYLL_ 0 0 0 REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF REV__ENST00000529712.5_1_11:47690447-47736202:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1108.287109375 1 1108.54085 1107.53357 0.6506 0.00072122 0.88146 0.00097713 1.5321 0.0016983 1108.5420712871849 75.896 0.61354 69.721 69.319 69.932 -6.1757 57 32 2 0 0 0 0.012148 1 49776 49776 74.423 7.0789 1 12885000 + 67986 22064 45198 46216 79441 79441 -0.015894104415792754 VEDNYHTSFLF 11 Unmodified _VEDNYHTSFLF_ 0 0 0 ENSG00000111266|ENST00000298573|DUSP16 ENSG00000111266|ENST00000298573|DUSP16 ENSG00000111266|ENST00000298573|DUSP16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.3143920898438 2 686.314417 1370.61428 0.64786 0.00044463 0.045044 3.0915E-05 0.6929 0.00047555 686.3146019438283 44.163 0.47873 39.311 39.039 39.517 -4.852 44 33 2 0 0 0 0.53952 1 26924 26924 14.405 0.79051 1 13995000 67987 2775 45199 46217 79442 79442 -0.05620129398675999 VEDTLQAFDFR 11 Unmodified _VEDTLQAFDFR_ 0 0 0 REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 670.8283081054688 2 670.827692 1339.64083 -0.12116 -8.1275E-05 0.98211 0.00065883 0.86096 0.00057755 670.8278165315191 49.031 0.17616 49.031 48.952 49.128 0 15 8 2 0 0 0 0.33405 1 26957 26957 24.991 4.5764 1 3726200 + 67988 21796 45200 46218 79443 79443 -0.015404405073468297 VEDTLQAFDFR 11 Unmodified _VEDTLQAFDFR_ 0 0 0 REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8292236328125 2 670.827692 1339.64083 0.72292 0.00048496 -1.253 -0.00084055 -0.53008 -0.00035559 670.8279585520954 49.502 0.19577 49.11 49.022 49.218 -0.3923 19 9 3 0 0 0 0.44182 1 26630 26630 19.362 0 1 3678100 + 67989 21796 45200 46218 79444 79444 -0.015404405073468297 VEDTLQAFDFR 11 Unmodified _VEDTLQAFDFR_ 0 0 0 REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 670.827692 1339.64083 -0.12116 -8.1275E-05 0.98211 0.00065883 0.86096 0.00057755 670.8278165315191 49.031 0.17616 49.031 48.952 49.128 0 -0.039463 0.0014492 NaN 24.991 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3726200 + 67990 21796 45200 46218 -0.015404405073468297 VEDTLQAFDFR 11 Unmodified _VEDTLQAFDFR_ 0 0 0 REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K REV__nc|ENSG00000163644|Q8N3J5-3|PPM1K MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 670.827692 1339.64083 0.72292 0.00048496 -1.253 -0.00084055 -0.53008 -0.00035559 670.8279585520954 49.502 0.19577 49.11 49.022 49.218 -0.3923 0.039463 -0.0015496 NaN 24.991 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3678100 + 67991 21796 45200 46218 -0.015404405073468297 VEEEEEEEM 9 Unmodified _VEEEEEEEM_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7169799804688 2 576.716084 1151.41761 0.54174 0.00031243 -0.39951 -0.00023041 0.14222 8.2022E-05 576.716139510148 68.446 0.45514 67.965 67.725 68.18 -0.48071 73 20 5 0 0 0 0.54444 1 37328 37328 4.756 0 1 4684200 67992 7870 45201 46219 79445 79445 -0.15203722074579673 VEEEFYLHIET 11 Unmodified _VEEEFYLHIET_ 0 0 0 REV__ENSG00000160505|ENST00000301295|NLRP4 REV__ENSG00000160505|ENST00000301295|NLRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.8341064453125 2 704.835182 1407.65581 -0.0034977 -2.4653E-06 -1.271 -0.00089585 -1.2745 -0.00089831 704.8343920752241 37.992 0.22322 37.992 37.865 38.089 0 23 10 3 0 0 0 0.65108 1 20259 20259 8.7454 0 1 2120300 + 67993 21548 45202 46220 79446 79446 -0.03170993429989721 VEEEGPFF 8 Unmodified _VEEEGPFF_ 0 0 0 REV__ENSG00000129744|ENST00000250693|ART1 REV__ENSG00000129744|ENST00000250693|ART1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2168579101562 2 477.216183 952.417813 0.50043 0.00023881 0.57976 0.00027667 1.0802 0.00051549 477.21657581389195 46.592 0.23715 46.592 46.481 46.718 0 19 10 2 0 0 0 0.74163 1 25482 25482 13.508 4.1248 1 1531300 + 67994 19683 45203 46221 79447 79447 -0.06029889501746766 VEEEKEFY 8 Unmodified _VEEEKEFY_ 0 0 0 ENST00000521508.1_1_13:52593221-52593263:+|nuORF ENST00000521508.1_1_13:52593221-52593263:+|nuORF ENST00000521508.1_1_13:52593221-52593263:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1672668457031 3 358.165962 1071.47606 NaN NaN NaN NaN NaN NaN NaN 60.561 1 60.071 59.571 60.571 -0.48932 0 0 0 0.97444 1 32981 32981 1.6526 0 1 67995 14745 45204 46222 79448 79448 -0.05682252647125097 VEEEKVKL 8 Unmodified _VEEEKVKL_ 0 0 0 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 REV__nc|ENSG00000173230|Q14789-4|GOLGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2817687988281 2 487.281857 972.549162 NaN NaN NaN NaN NaN NaN NaN 84.139 1 84.139 83.639 84.639 0 0 0 0 0.97444 1 46650 46650 2.5775 0 1 + 67996 22713 45205 46223 79449 79449 0.06178920866148019 VEEETKKEL 9 Unmodified _VEEETKKEL_ 0 0 0 ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 ENSG00000140259|ENST00000267812|MFAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.794677734375 2 552.792786 1103.57102 0.67705 0.00037427 1.8851 0.0010421 2.5622 0.0014163 552.7933421707726 40.432 0.63106 35.902 35.742 36.373 -4.5294 60 38 2 0 0 0 0.10247 1 24120 24120 32.786 1.5173 1 24336000 67997 5211 45206 46224 79450 79450 0.02337680824052768 VEEEVELLL 9 Unmodified _VEEEVELLL_ 0 0 0 ENST00000388822.9_1_4:119631314-119631464:+|nuORF ENST00000388822.9_1_4:119631314-119631464:+|nuORF ENST00000388822.9_1_4:119631314-119631464:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8646240234375 3 358.197262 1071.56996 NaN NaN NaN NaN NaN NaN NaN 47.057 1 47.024 46.524 47.524 -0.033417 0 0 0 0.7818 1 25341 25341 7.1017 0 1 67998 12639 45207 46225 79451 79451 0.037034664551583774 VEEGFSSVEKC 11 Unmodified _VEEGFSSVEKC_ 0 0 0 REV__ENST00000506421.5_1_4:86396696-86644501:+|nuORF REV__ENST00000506421.5_1_4:86396696-86644501:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.274169921875 2 607.273903 1212.53325 0.2055 0.00012479 -1.7927 -0.0010887 -1.5872 -0.00096389 607.2728322594655 76.565 0.28067 76.614 76.468 76.749 0.049171 23 11 3 0 0 0 0.58219 1 42252 42252 12.241 0.74595 1 3455000 + 67999 28088 45208 46226 79452 79452 -0.06451153433044965 VEEKCRQSF 9 Unmodified _VEEKCRQSF_ 0 0 0 ENST00000529408.1_1_12:85431954-85441296:+|nuORF;ENST00000525971.6_1_12:85431954-85518298:+|nuORF;nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1 ENST00000529408.1_1_12:85431954-85441296:+|nuORF;ENST00000525971.6_1_12:85431954-85518298:+|nuORF ENST00000529408.1_1_12:85431954-85441296:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.3491821289062 2 563.271498 1124.52844 0.95012 0.00053517 0.21933 0.00012354 1.1694 0.00065872 563.7726228125123 80.418 0.68867 74.242 73.878 74.566 -6.1757 72 39 2 0 0 0 0.19205 1 52941 52941 10.074 0 1 22055000 68000 14871;4525 45209 46227 79453 79453 -0.028839927851549874 VEEKFKLDI 9 Unmodified _VEEKFKLDI_ 0 0 0 REV__ENSG00000068654|ENST00000263857|POLR1A REV__ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2537841796875 2 560.816064 1119.61758 1.106 0.00062024 0.010063 5.6437E-06 1.116 0.00062589 560.8162772497244 54.588 0.24983 54.588 54.44 54.689 0 22 10 3 0 0 0 0.19891 1 30252 30252 11.64 0 1 2788200 + 68001 17439 45210 46228 79454 79454 0.06255165445986677 VEEKGCKIVL 10 Unmodified _VEEKGCKIVL_ 0 0 0 REV__ENSG00000077274|ENST00000324068|CAPN6 REV__ENSG00000077274|ENST00000324068|CAPN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3189086914062 2 559.317917 1116.62128 0.63546 0.00035542 -1.0551 -0.00059014 -0.41965 -0.00023472 559.3173534326876 66.704 0.38234 60.528 60.332 60.714 -6.1757 32 21 2 0 0 0 0.085354 1 43375 43375 49.933 1.5872 1 17370000 + 68002 17607 45211 46229 79455 79455 0.06763511948201995 VEELFKLL 8 Unmodified _VEELFKLL_ 0 0 0 ENST00000604236.5_1_10:123239373-123278228:-|nuORF;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2;nc|ENSG00000077782|P11362-14|FGFR1;nc|ENSG00000077782|P11362-4|FGFR1;nc|ENSG00000077782|P11362-6|FGFR1;ENST00000526570.5_1_8:38271148-38285795:-|nuORF;ENSG00000068078|ENST00000440486|FGFR3;nc|ENSG00000068078|P22607-2|FGFR3;nc|ENSG00000068078|P22607-3|FGFR3;nc|ENSG00000077782|P11362-5|FGFR1;nc|ENSG00000077782|P11362-3|FGFR1;nc|ENSG00000077782|P11362-20|FGFR1;nc|ENSG00000077782|P11362-7|FGFR1;nc|ENSG00000077782|P11362-2|FGFR1;nc|ENSG00000077782|P11362-19|FGFR1;ENSG00000077782|ENST00000447712|FGFR1;nc|ENSG00000077782|P11362-21|FGFR1 ENST00000604236.5_1_10:123239373-123278228:-|nuORF;nc|ENSG00000077782|P11362-20|FGFR1 nc|ENSG00000077782|P11362-20|FGFR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7968444824219 2 495.797143 989.579734 NaN NaN NaN NaN NaN NaN NaN 101.08 1 101.04 100.54 101.54 -0.04216 0 0 0 0.97348 1 56154 56154 5.7604 0 1 68003 939;1227 45212 46230 79456 79456 0.0845269925117691 VEEMYEPES 9 Unmodified _VEEMYEPES_ 0 0 0 REV__ENSG00000116688|ENST00000235329|MFN2 REV__ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.72900390625 2 556.726255 1111.43796 0.47458 0.00026421 1.1871 0.00066091 1.6617 0.00092512 556.7283610938866 48.109 0.41956 48.109 47.852 48.272 0 72 20 5 0 0 0 0.41742 1 26459 26459 11.64 0 1 18546000 + 68004 19057 45213 46231 79457 79457 -0.11330506624108239 VEENYRLEKEE 11 Unmodified _VEENYRLEKEE_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2 ENSG00000150527|ENST00000640607|MIA2 ENSG00000150527|ENST00000640607|MIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 719.3455200195312 2 719.346446 1436.67834 -0.64127 -0.00046129 -0.30482 -0.00021927 -0.94609 -0.00068056 719.346156438073 34.855 0.74654 34.855 34.518 35.265 0 135 38 6 0 0 0 0.50515 1 18418 18418 16.149 1.7437 1 608810000 68005 6059 45214 46232 79458 79458 -0.022533940324137802 VEEQLDQTWK 10 Unmodified _VEEQLDQTWK_ 0 0 0 ENST00000608609.1_1_2:97477994-97479367:-|nuORF ENST00000608609.1_1_2:97477994-97479367:-|nuORF ENST00000608609.1_1_2:97477994-97479367:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.314453125 2 638.314417 1274.61428 0.34482 0.0002201 -0.089593 -5.7189E-05 0.25523 0.00016291 638.314318474118 26.952 0.70956 23.916 23.57 24.28 -3.0365 134 36 5 0 0 0 0.66569 1 14853 14853 6.7232 0.51738 1 323530000 68006 15872 45215 46233 79459 79459 -0.012041293986840174 VEEQPDYYYFK 11 Unmodified _VEEQPDYYYFK_ 0 0 0 REV__nc|ENSG00000274211|O14512-2|SOCS7 REV__nc|ENSG00000274211|O14512-2|SOCS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 740.8322143554688 2 740.835182 1479.65581 0.066593 4.9334E-05 -2.6393 -0.0019553 -2.5727 -0.0019059 740.8334592354988 58.224 0.20134 57.734 57.639 57.84 -0.48982 14 9 2 0 0 0 0.71618 1 31678 31678 2.7352 0 1 2097200 + 68007 24641 45216 46234 79460 79460 -0.06482993430017814 VEEQPDYYYFK 11 Unmodified _VEEQPDYYYFK_ 0 0 0 REV__nc|ENSG00000274211|O14512-2|SOCS7 REV__nc|ENSG00000274211|O14512-2|SOCS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 740.8373413085938 2 740.835182 1479.65581 1.2564 0.00093079 0.45369 0.00033611 1.7101 0.0012669 740.8359005350012 71.197 0.31834 71.236 71.068 71.386 0.039024 31 13 3 0 0 0 0.71618 1 39186 39186 2.7352 0 1 1776600 + 68008 24641 45216 46234 79461 79461 -0.06482993430017814 VEEQRPPEL 9 Unmodified _VEEQRPPEL_ 0 0 0 ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF ENSG00000077454|ENST00000310300|LRCH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7857666015625 2 548.785296 1095.55604 0.81992 0.00044996 -0.80547 -0.00044203 0.014452 7.9311E-06 548.7846710312539 83.926 1.1684 77.75 77.212 78.381 -6.1757 84 63 2 0 0 0 0.08907 1 54915 54915 31.268 0 1 10712000 68009 1218;13771 45217 46235 79462 79462 0.012082337467290927 VEERNLLSV 9 Unmodified _VEERNLLSV_ 0 0 0 ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF ENSG00000108953|ENST00000264335|YWHAE ENSG00000108953|ENST00000264335|YWHAE MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7984619140625 2 529.795663 1057.57677 1.4419 0.00076392 2.0379 0.0010797 3.4798 0.0018436 529.7969029562149 64.381 0.38028 58.205 57.935 58.315 -6.1757 33 19 2 0 0 0 0.07087 1 41599 41599 39.95 1.7985 1 17225000 68010 2621 45218 46236 79463 79463 0.05028824126384279 VEERSGRHML 10 Unmodified _VEERSGRHML_ 0 0 0 REV__ENSG00000198286|ENST00000396946|CARD11 REV__ENSG00000198286|ENST00000396946|CARD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2084655761719 3 405.20839 1212.60334 0.12901 5.2275E-05 -1.5806 -0.00064049 -1.4516 -0.00058821 405.20799933308484 39.887 0.33797 39.892 39.688 40.026 0.0050545 35 15 3 0 0 0 0.65502 1 21320 21320 4.1895 2.7344 1 4365200 + 68011 24010 45219 46237 79464 79464 0.005541897460716427 VEESKKEDTTA 11 Unmodified _VEESKKEDTTA_ 0 0 0 ENST00000467731.1_1_21:33057290-33073360:-|nuORF;nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4 ENST00000467731.1_1_21:33057290-33073360:-|nuORF ENST00000467731.1_1_21:33057290-33073360:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8013916015625 2 618.80134 1235.58813 NaN NaN NaN NaN NaN NaN NaN 92.028 1 92.028 91.528 92.528 0 0 0 0 0.9435 1 50888 50888 0 0 1 68012 6447 45220 46238 79465 79465 -0.020244433608013424 VEETAAWV 8 Unmodified _VEETAAWV_ 0 0 0 ENST00000527829.1_1_11:47435993-47436711:+|nuORF;nc|ENSG00000165915|Q96H72-2|SLC39A13 ENST00000527829.1_1_11:47435993-47436711:+|nuORF ENST00000527829.1_1_11:47435993-47436711:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 904.4415893554688 1 904.441074 903.433798 -0.18241 -0.00016498 0.83249 0.00075293 0.65008 0.00058795 904.441722048204 71.722 0.35638 71.722 71.505 71.861 0 33 15 3 0 0 0 0.5284 1 39887 39887 32.117 6.7177 1 2309000 68013 14843 45221 46239 79466 79466 -0.021781832648571253 VEETFGLPR 9 Unmodified _VEETFGLPR_ 0 0 0 REV__nc|ENSG00000150093|P05556-2|ITGB1 REV__nc|ENSG00000150093|P05556-2|ITGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2782592773438 2 524.277106 1046.53966 0.76508 0.00040112 -1.0125 -0.00053084 -0.24743 -0.00012972 524.2769987004693 45.871 0.29515 45.871 45.722 46.018 0 27 14 3 0 0 0 0.047196 1 25017 25017 46.021 0 1 21444000 + 68014 21018 45222 46240 79467 79467 0.01825152580613576 VEEWESEE 8 Unmodified _VEEWESEE_ 0 0 0 REV__ENSG00000113716|ENST00000502717|HMGXB3 REV__ENSG00000113716|ENST00000502717|HMGXB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.574951171875 1 1036.41056 1035.40329 0.097383 0.00010093 0.050097 5.1921E-05 0.14748 0.00015285 1037.4150210533012 36.696 0.23774 36.718 36.599 36.836 0.021545 12 10 2 0 0 0 0.80975 1 19458 19458 0.79363 0 1 2674100 + 68015 18886 45223 46241 79468 79468 -0.11300006440546895 VEEYHNSEQER 11 Unmodified _VEEYHNSEQER_ 0 0 0 nc|ENSG00000165325|Q05D60-2|DEUP1;ENSG00000165325|ENST00000298050|DEUP1 nc|ENSG00000165325|Q05D60-2|DEUP1 nc|ENSG00000165325|Q05D60-2|DEUP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8759155273438 3 473.876022 1418.60624 0.11484 5.4422E-05 -0.70946 -0.0003362 -0.59462 -0.00028178 474.21013484025514 45.483 0.24223 45.483 45.363 45.605 0 32 13 3 0 0 0 0.68427 1 24763 24763 2.6312 0 1 49070000 68016 7327 45224 46242 79469 79469 -0.08632308386131626 VEEYHNSEQER 11 Unmodified _VEEYHNSEQER_ 0 0 0 nc|ENSG00000165325|Q05D60-2|DEUP1;ENSG00000165325|ENST00000298050|DEUP1 nc|ENSG00000165325|Q05D60-2|DEUP1 nc|ENSG00000165325|Q05D60-2|DEUP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 473.876022 1418.60624 0.11484 5.4422E-05 -0.70946 -0.0003362 -0.59462 -0.00028178 474.21013484025514 45.483 0.24223 45.483 45.363 45.605 0 0.0086878 0.00052754 NaN 2.6312 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 49070000 68017 7327 45224 46242 -0.08632308386131626 VEEYLSPA 8 Unmodified _VEEYLSPA_ 0 0 0 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 907.440673828125 1 907.44074 906.433463 0.011476 1.0414E-05 0.32106 0.00029135 0.33254 0.00030176 907.4407874339704 62.592 0.24308 62.592 62.506 62.749 0 16 10 2 0 0 0 0.19792 1 34897 34897 70.716 10.326 1 927790 68018 6789 45225 46243 79470 79470 -0.02349602984725152 VEEYLSPA 8 Unmodified _VEEYLSPA_ 0 0 0 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 ENSG00000161328|ENST00000270115|LRRC56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.2238464355469 2 454.224008 906.433463 0.40254 0.00018284 -0.56295 -0.0002557 -0.16041 -7.2863E-05 454.2239370731678 62.565 0.17491 62.565 62.529 62.704 0 12 7 2 0 0 0 0.5953 1 34915 34915 26.341 6.9023 1 586940 68019 6789 45225 46243 79471 79471 -0.02349602984725152 VEEYQIVFY 9 Unmodified _VEEYQIVFY_ 0 0 0 REV__ENSG00000163659|ENST00000295924|TIPARP REV__ENSG00000163659|ENST00000295924|TIPARP MSMS AL20221201_MKP_PDAC_01 4 595.293212890625 2 595.292422 1188.57029 NaN NaN NaN NaN NaN NaN NaN 98.751 1 92.576 92.076 93.076 -6.1757 0 0 0 0.32177 1 65553 65553 24.021 9.1823 1 + 68020 21798 45226 46244 79472 79472 -0.016451138249976793 VEFASPGD 8 Unmodified _VEFASPGD_ 0 0 0 nc|ENSG00000205277|Q9UKN1|MUC12 nc|ENSG00000205277|Q9UKN1|MUC12 nc|ENSG00000205277|Q9UKN1|MUC12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.3680419921875 1 821.367575 820.360298 -0.21099 -0.0001733 1.3323 0.0010943 1.1213 0.00092101 821.3687733821517 70.421 0.31174 70.421 70.253 70.565 0 27 12 3 0 0 0 0.46494 2 39184 39184;39284 38.151 6.0342 1 1622700 68021 16511 45227 46245 79473;79474 79473 -0.057067317073233426 VEFATHED 8 Unmodified _VEFATHED_ 0 0 0 ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF ENSG00000126945|ENST00000316594|HNRNPH2;ENSG00000169045|ENST00000393432|HNRNPH1 ENSG00000126945|ENST00000316594|HNRNPH2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8581848144531 2 474.208889 946.403226 -0.40331 -0.00019125 -0.99433 -0.00047152 -1.3976 -0.00066277 474.20872159575583 33.835 0.17891 33.835 33.747 33.926 0 14 8 2 0 0 0 8.7369 1 17733 17733 9.3474 4.1168 1 2463300 68022 3981;7827 45228 46246 79475 79475 -0.07211961649898058 VEFEDELF 8 Unmodified _VEFEDELF_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000037665 REV__CON__ENSEMBL:ENSBTAP00000037665 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7374877929688 2 514.234573 1026.45459 0.48509 0.00024945 0.39798 0.00020466 0.88307 0.0004541 514.2347524435503 72.969 0.23264 72.969 72.819 73.052 0 18 10 2 0 0 0 0.78849 2 40603 40603;40623 9.3474 3.3626 1 574940 + + 68023 16831 45229 46247 79476;79477 79476 -0.05757637675856131 VEFEDELF 8 Unmodified _VEFEDELF_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000037665 REV__CON__ENSEMBL:ENSBTAP00000037665 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7374877929688 2 514.234573 1026.45459 0.48509 0.00024945 0.39798 0.00020466 0.88307 0.0004541 514.2347524435503 72.969 0.23264 72.969 72.819 73.052 0 18 10 2 0 0 0 8.7369 1 40603 40603 9.3474 0.75416 1 574940 + + 68024 16831 45229 46247 79478 79478 -0.05757637675856131 VEFEKVPYFEK 11 Unmodified _VEFEKVPYFEK_ 0 0 0 REV__ENSG00000186160|ENST00000334194|CYP4Z1 REV__ENSG00000186160|ENST00000334194|CYP4Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2474670410156 3 472.246616 1413.71802 0.65828 0.00031087 1.9331 0.00091292 2.5914 0.0012238 472.58218866300734 60.044 0.25597 60.044 59.902 60.158 0 27 11 3 0 0 0 0.73506 1 33456 33456 0.32927 0 1 2795200 + 68025 23556 45230 46248 79479 79479 0.027707777089744923 VEFEKVPYFEK 11 Unmodified _VEFEKVPYFEK_ 0 0 0 REV__ENSG00000186160|ENST00000334194|CYP4Z1 REV__ENSG00000186160|ENST00000334194|CYP4Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.368896484375 2 707.866285 1413.71802 0.34034 0.00024092 1.9373 0.0013713 2.2776 0.0016123 707.8679667308571 60.04 0.23476 60.04 59.923 60.158 0 15 10 2 0 0 0 0.70403 1 33485 33485 3.8763 0.88109 1 1489100 + 68026 23556 45230 46248 79480 79480 0.027707777089744923 VEFEKVPYFEK 11 Unmodified _VEFEKVPYFEK_ 0 0 0 REV__ENSG00000186160|ENST00000334194|CYP4Z1 REV__ENSG00000186160|ENST00000334194|CYP4Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.868408203125 2 707.866285 1413.71802 0.26346 0.00018649 3.2773 0.0023199 3.5408 0.0025064 708.369691427994 60.811 0.35065 60.811 60.625 60.975 0 21 14 2 0 0 0 0.6747 1 33904 33904 6.6304 3.0433 1 1180000 + 68027 23556 45230 46248 79481 79481 0.027707777089744923 VEFITREL 8 Unmodified _VEFITREL_ 0 0 0 ENST00000539247.5_1_X:100871719-100872310:-|nuORF ENST00000539247.5_1_X:100871719-100872310:-|nuORF ENST00000539247.5_1_X:100871719-100872310:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7790832519531 2 503.782025 1005.5495 1.4668 0.00073896 -4.0186 -0.0020245 -2.5518 -0.0012856 503.7795394686725 100.82 0.17299 94.642 94.515 94.688 -6.1757 20 11 2 0 0 0 0.74163 1 67534 67534 13.508 0 1 27877000 68028 15018 45231 46249 79482 79482 0.04694340586001999 VEFLLDLI 8 Unmodified _VEFLLDLI_ 0 0 0 ENSG00000118729|ENST00000261448|CASQ2 ENSG00000118729|ENST00000261448|CASQ2 ENSG00000118729|ENST00000261448|CASQ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 481.2550964355469 2 481.283869 960.553185 0.93408 0.00044956 -1.1559 -0.0005563 -0.22179 -0.00010675 481.28354147778765 34.632 0.38756 30.537 30.348 30.735 -4.0951 60 22 4 0 0 0 8.7369 1 19864 19864 2.5775 0 1 52869000 68029 3390 45232 46250 79483 79483 0.07133010359848413 VEFLWKSERYE 11 Unmodified _VEFLWKSERYE_ 0 0 0 nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 nc|ENSG00000135905|Q96BY6-3|DOCK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.9181518554688 3 495.91727 1484.72998 -0.32724 -0.00016228 0.38227 0.00018957 0.055026 2.7288E-05 495.91753023472603 56.107 0.30879 56.039 55.885 56.194 -0.068741 56 15 5 0 0 0 0.69316 1 30458 30458 2.2527 0.16876 1 95335000 68030 4753 45233 46251 79484 79484 0.007003944522011807 VEFNWYHL 8 Unmodified _VEFNWYHL_ 0 0 0 REV__ENST00000407073.5_2_2:148990944-149215877:+|nuORF REV__ENST00000407073.5_2_2:148990944-149215877:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 369.5650939941406 3 369.846787 1106.51853 1.2133 0.00044874 -0.9243 -0.00034185 0.289 0.00010689 369.8465183223218 35.456 0.39776 31.263 31.076 31.474 -4.1928 46 24 3 0 0 0 8.7369 1 20668 20668 1.8442 0 1 19833000 + 68031 26665 45234 46252 79485 79485 -0.030468127282347268 VEFRVHKEKKS 11 Unmodified _VEFRVHKEKKS_ 0 0 0 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 MSMS AL20221201_MKP_PDAC_01 4 693.89306640625 2 693.896243 1385.77793 NaN NaN NaN NaN NaN NaN NaN 94.905 1 88.729 88.229 89.229 -6.1757 0 0 0 0.86932 1 62862 62862 8.7454 2.0222 1 + 68032 23820 45235 46253 79486 79486 0.1004751316288548 VEFYYVLTHSL 11 Unmodified _VEFYYVLTHSL_ 0 0 0 REV__ENST00000376552.6_1_9:82186909-82187002:+|nuORF REV__ENST00000376552.6_1_9:82186909-82187002:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.1614074707031 3 457.571211 1369.6918 -0.079831 -3.6528E-05 -1.6834 -0.00077026 -1.7632 -0.00080679 457.57015008082976 56.97 0.25401 56.485 56.309 56.563 -0.48554 21 11 3 0 0 0 0.30584 1 30954 30954 0.45452 0.29519 1 1439000 + 68033 26227 45236 46254 79487 79487 0.021745085375187045 VEGAGCRR 8 Unmodified _VEGAGCRR_ 0 0 0 ENST00000571688.5_2_16:11643218-11643479:-|nuORF ENST00000571688.5_2_16:11643218-11643479:-|nuORF ENST00000571688.5_2_16:11643218-11643479:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.2138671875 2 424.213786 846.413019 NaN NaN NaN NaN NaN NaN NaN 76.105 1 75.625 75.125 76.125 -0.47945 0 0 0 0.97444 1 41663 41663 0.69038 0 1 68034 15490 45237 46255 79488 79488 -0.016330521254985797 VEGDQPRMVFL 11 Unmodified _VEGDQPRMVFL_ 0 0 0 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 REV__nc|ENSG00000134571|Q14896-2|MYBPC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 65.935 1 65.935 65.435 66.435 0 0 0 0 0.94002 1 36775 36775 1.0136 0.31591 1 + 68035 19994 45238 46256 79489 79489 0.010571113458127002 VEGHRSSGL 9 Unmodified _VEGHRSSGL_ 0 0 0 ENST00000338785.7_1_21:38885830-38885905:+|nuORF ENST00000338785.7_1_21:38885830-38885905:+|nuORF ENST00000338785.7_1_21:38885830-38885905:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2441711425781 2 471.243598 940.472643 NaN NaN NaN NaN NaN NaN NaN 58.704 1 58.704 58.204 59.204 0 0 0 0 0.6032 1 32689 32689 12.532 0 1 68036 11942 45239 46257 79490 79490 2.5420895212846517E-05 VEGINVRYY 9 Unmodified _VEGINVRYY_ 0 0 0 REV__ENST00000463634.6_1_6:4041126-4056780:+|nuORF REV__ENST00000463634.6_1_6:4041126-4056780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7864990234375 2 556.790381 1111.56621 0.82504 0.00045937 -3.7835 -0.0021066 -2.9585 -0.0016473 556.7859980933656 73.604 0.40179 73.604 73.454 73.856 0 38 17 3 0 0 0 0.58865 1 41079 41079 2.0598 0.40713 1 680950 + 68037 18833 45240 46258 79491 79491 0.014888414719507637 VEGLFFKDLK 10 Unmodified _VEGLFFKDLK_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.34033203125 2 598.339707 1194.66486 0.94467 0.00056524 0.45413 0.00027172 1.3988 0.00083696 598.3395277264126 50.495 0.59874 50.446 50.19 50.789 -0.049545 55 29 3 0 0 0 0.16361 1 27242 27242 38.176 9.094 1 3781700 68038 5606 45241 46259 79492 79492 0.0753144471698306 VEGLFFKDLK 10 Unmodified _VEGLFFKDLK_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2290344238281 3 399.228897 1194.66486 0.98887 0.00039479 -0.46287 -0.00018479 0.526 0.00020999 399.22870150611135 83.265 1.0475 77.09 76.355 77.403 -6.1757 85 57 2 0 0 0 0.57893 1 54694 54694 7.4771 2.4295 1 15263000 68039 5606 45241 46259 79493 79493 0.0753144471698306 VEGLQGVYI 9 Unmodified _VEGLQGVYI_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2682800292969 2 489.26875 976.522947 0.11472 5.6129E-05 -0.0029689 -1.4526E-06 0.11175 5.4676E-05 489.2685286646797 62.066 0.19258 62.066 61.929 62.122 0 10 7 2 0 0 0 0.45045 1 34618 34618 10.074 0.6908 1 1042200 68040 4953 45242 46260 79494 79494 0.03374651694673503 VEGMHREL 8 Unmodified _VEGMHREL_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1;ENST00000508709.1_1_5:145508626-145509697:-|nuORF ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7422180175781 2 485.742376 969.4702 0.7488 0.00036372 0.33191 0.00016122 1.0807 0.00052495 485.74262066602523 67.904 0.24412 67.422 67.208 67.453 -0.48218 17 10 2 0 0 0 0.78849 1 37050 37050 9.3474 0 1 1342100 68041 4530 45243 46261 79495 79495 -0.015756296397853475 VEGNFGQTY 9 Unmodified _VEGNFGQTY_ 0 0 0 ENSG00000163357|ENST00000295542|DCST1;nc|ENSG00000163357|Q5T197-3|DCST1;nc|ENSG00000163357|Q5T197-2|DCST1 ENSG00000163357|ENST00000295542|DCST1 ENSG00000163357|ENST00000295542|DCST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7288818359375 2 507.729989 1013.44543 0.34559 0.00017547 0.33165 0.00016839 0.67723 0.00034385 507.7298870682218 37.653 0.43083 37.653 37.475 37.905 0 56 21 3 0 0 0 0.19127 1 20003 20003 24.021 24.021 1 17420000 68042 6983 45244 46262 79496 79496 -0.060759862415238786 VEGPELNWL 9 Unmodified _VEGPELNWL_ 0 0 0 REV__ENSG00000162621|ENST00000294635|LRRC53 REV__ENSG00000162621|ENST00000294635|LRRC53 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2390747070312 2 528.771657 1055.52876 -0.37171 -0.00019655 3.2865 0.0017378 2.9148 0.0015412 529.2747080553227 55.401 0.16042 55.401 55.327 55.487 0 11 6 2 0 0 0 0.18521 1 30813 30813 16.942 6.7589 1 1154600 + 68043 21667 45245 46263 79497 79497 0.00321750206330762 VEGQEKWAH 9 Unmodified _VEGQEKWAH_ 0 0 0 REV__ENST00000352171.11_1_1:52344096-52344207:-|nuORF REV__ENST00000352171.11_1_1:52344096-52344207:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2633056640625 2 542.26453 1082.51451 -0.17773 -9.6376E-05 0.062122 3.3687E-05 -0.11561 -6.2689E-05 542.2645191471776 22.87 0.20073 22.87 22.754 22.955 0 24 11 3 0 0 0 0.51218 1 11615 11615 6.7232 0 1 2891000 + 68044 25783 45246 46264 79498 79498 -0.023449022219665494 VEGRPEGAL 9 Unmodified _VEGRPEGAL_ 0 0 0 REV__ENSG00000039537|ENST00000337836|C6 REV__ENSG00000039537|ENST00000337836|C6 MSMS AL20221201_MKP_PDAC_01 4 464.2479248046875 2 464.248349 926.482145 NaN NaN NaN NaN NaN NaN NaN 30.826 1 27.329 26.829 27.829 -3.497 0 0 0 0.32177 1 17424 17424 24.021 0 1 + 68045 17188 45247 46265 79499 79499 0.01596310375032317 VEHEGGYLPF 10 Unmodified _VEHEGGYLPF_ 0 0 0 ENST00000435868.1_1_22:24056493-24057363:-|nuORF;nc|ENSG00000272578|Q6P575|GUSBP11 ENST00000435868.1_1_22:24056493-24057363:-|nuORF ENST00000435868.1_1_22:24056493-24057363:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2764282226562 2 574.274564 1146.53457 NaN NaN NaN NaN NaN NaN NaN 63.888 1 63.402 62.902 63.902 -0.48512 0 0 0 0.7417 1 34849 34849 14.838 2.3067 1 68046 13323 45248 46266 79500 79500 -0.03283151282016661 VEHEKEMGL 9 Unmodified _VEHEKEMGL_ 0 0 0 REV__ENSG00000115183|ENST00000263635|TANC1 REV__ENSG00000115183|ENST00000263635|TANC1 MSMS AL20221201_MKP_PDAC_01 4 357.8419494628906 3 357.842825 1070.50665 NaN NaN NaN NaN NaN NaN NaN 27.478 1 24.441 23.941 24.941 -3.0365 0 0 0 0.76439 1 15230 15230 4.5289 2.0941 1 + 68047 18956 45249 46267 79501 79501 -0.025787975337152602 VEHIPPLLY 9 Unmodified _VEHIPPLLY_ 0 0 0 REV__ENSG00000132702|ENST00000255039|HAPLN2 REV__ENSG00000132702|ENST00000255039|HAPLN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 541.271240234375 2 540.808042 1079.60153 0.47621 0.00025754 3.0412 0.0016447 3.5174 0.0019023 540.8091610414239 66.364 0.61906 60.189 59.918 60.537 -6.1757 58 35 2 0 0 0 0.18521 1 43355 43355 16.942 4.4107 1 31082000 + 68048 19876 45250 46268 79502 79502 0.06491503999768611 VEHNFLGRHE 10 Unmodified _VEHNFLGRHE_ 0 0 0 REV__ENSG00000188368|ENST00000341747|PRR19 REV__ENSG00000188368|ENST00000341747|PRR19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.3072509765625 2 619.307261 1236.59997 -0.62948 -0.00038984 -0.25173 -0.0001559 -0.88122 -0.00054574 619.3071324265305 32.15 0.29594 32.15 31.983 32.278 0 45 14 4 0 0 0 0.38092 1 16723 16723 22.736 0 1 14493000 + 68049 23709 45251 46269 79503 79503 -0.008867370363077498 VEHQEEWK 8 Unmodified _VEHQEEWK_ 0 0 0 REV__nc|ENSG00000103995|O94986-2|CEP152 REV__nc|ENSG00000103995|O94986-2|CEP152 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1728820800781 3 362.173451 1083.49852 NaN NaN NaN NaN NaN NaN NaN 46.883 1 46.883 46.383 47.383 0 0 0 0 0.97444 1 25644 25644 1.6526 0 1 + 68050 18331 45252 46270 79504 79504 -0.0398860845884883 VEHRLGRQL 9 Unmodified _VEHRLGRQL_ 0 0 0 REV__ENSG00000265203|ENST00000584701|RBP3 REV__ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8839721679688 3 369.884235 1106.63087 0.85149 0.00031495 0.53826 0.00019909 1.3897 0.00051405 369.88420638559256 16.862 0.14855 14.305 14.221 14.37 -2.557 41 24 2 0 0 0 0.51218 1 8735 8735 4.1895 0 1 2913700 + 68051 24601 45253 46271 79505 79505 0.08182461068622615 VEHSLCLPSF 10 Carbamidomethyl (C) _VEHSLC(Carbamidomethyl (C))LPSF_ VEHSLC(1)LPSF VEHSLC(46)LPSF 0 1 0 REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3 REV__nc|ENSG00000155393|Q7Z4Q2-2|HEATR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.7937622070312 2 594.789524 1187.56449 0.18345 0.00010911 1.7295 0.0010287 1.9129 0.0011378 594.7923310648908 84.454 0.27321 78.278 78.107 78.381 -6.1757 30 15 3 0 0 0 0.1028 1 55541 55541 46.021 6.0713 1 17117000 + 68052 21270 45254 46272 79506 79506 1043 -0.021785356083455554 VEHTCGEVTE 10 Unmodified _VEHTCGEVTE_ 0 0 0 REV__ENSG00000039123|ENST00000230640|MTREX REV__ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.2384643554688 2 552.237321 1102.46009 0.68866 0.0003803 -0.65101 -0.00035951 0.037649 2.0791E-05 552.2379193238617 43.249 0.61385 38.484 38.243 38.857 -4.7648 136 41 5 0 0 0 0.67033 1 26194 26194 6.2058 0 1 101900000 + 68053 17184 45255 46273 79507 79507 -0.08704282155690635 VEHVANPSDL 10 Unmodified _VEHVANPSDL_ 0 0 0 REV__ENSG00000213995|ENST00000680254|NAXD REV__ENSG00000213995|ENST00000680254|NAXD MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.271240234375 2 540.769645 1079.52474 0.57641 0.0003117 0.098837 5.3448E-05 0.67525 0.00036515 540.7714188452281 66.07 1.4615 59.894 59.382 60.843 -6.1757 329 84 5 0 0 0 0.52888 1 43355 43355 14.838 3.198 1 517890000 + 68054 24301 45256 46274 79508 79508 -0.011843392873743142 VEIEKTSGEI 10 Unmodified _VEIEKTSGEI_ 0 0 0 nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3 nc|ENSG00000163673|Q9C098|DCLK3 nc|ENSG00000163673|Q9C098|DCLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7933959960938 2 552.792786 1103.57102 0.91848 0.00050773 0.67747 0.0003745 1.5959 0.00088223 552.7931499009723 36.472 0.39932 36.472 36.311 36.71 0 44 19 3 0 0 0 0.1899 1 19330 19330 34.932 2.1464 1 14827000 68055 7045 45257 46275 79509 79509 0.02337680824052768 VEIFTYEDL 9 Unmodified _VEIFTYEDL_ 0 0 0 ENST00000468807.1_1_22:29025506-29075759:-|nuORF ENST00000468807.1_1_22:29025506-29075759:-|nuORF ENST00000468807.1_1_22:29025506-29075759:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.302490234375 2 564.776605 1127.53866 1.0658 0.00060195 -0.93452 -0.0005278 0.13129 7.415E-05 564.7766708852844 81.004 0.24818 74.829 74.696 74.944 -6.1757 18 13 2 0 0 0 0.19891 1 53182 53182 3.9444 0 1 10507000 68056 13816 45258 46276 79510 79510 -0.020011065789503846 VEIHHGGSAL 10 Unmodified _VEIHHGGSAL_ 0 0 0 REV__nc|ENSG00000109118|Q96QT6-4|PHF12 REV__nc|ENSG00000109118|Q96QT6-4|PHF12 MSMS AL20221201_MKP_PDAC_01 4 510.2649230957031 2 510.267073 1018.51959 NaN NaN NaN NaN NaN NaN NaN 98.723 1 92.547 92.047 93.047 -6.1757 0 0 0 0.31648 1 65527 65527 36.127 2.0246 1 + 68057 18647 45259 46277 79511 79511 0.011074016406610099 VEINEDEDEE 10 Unmodified _VEINEDEDEE_ 0 0 0 REV__ENSG00000100664|ENST00000216554|EIF5 REV__ENSG00000100664|ENST00000216554|EIF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.4986877441406 3 407.498217 1219.47282 1.4418 0.00058753 1.0255 0.0004179 2.4673 0.0010054 407.4986551263866 64.527 0.43921 58.351 58.167 58.606 -6.1757 44 24 2 0 0 0 0.67033 1 41786 41786 3.3196 1.5774 1 15386000 + 68058 18100 45260 46278 79512 79512 -0.12813592282486752 VEIPPKDIMA 10 Unmodified _VEIPPKDIMA_ 0 0 0 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 ENSG00000141431|ENST00000269197|ASXL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.5379028320312 3 371.538854 1111.59473 -0.67511 -0.00025083 -1.0648 -0.00039562 -1.7399 -0.00064645 371.53843335137674 48.652 0.38179 48.652 48.47 48.852 0 51 17 4 0 0 0 0.67046 1 26725 26725 6.1918 6.1918 1 24063000 68059 5327 45261 46279 79513 79513 0.04339823056852765 VEISSVMVLY 10 Unmodified _VEISSVMVLY_ 0 0 0 nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-4|PARP14 nc|ENSG00000173193|Q460N5-4|PARP14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3056030273438 2 570.304475 1138.5944 NaN NaN NaN NaN NaN NaN NaN 99.657 1 99.621 99.121 100.12 -0.036301 0 0 0 0.92825 1 55348 55348 6.7232 0 1 68060 16388 45262 46280 79514 79514 0.03064403337020849 VEIVRSGI 8 Unmodified _VEIVRSGI_ 0 0 0 ENSG00000173548|ENST00000308527|SNX33 ENSG00000173548|ENST00000308527|SNX33 ENSG00000173548|ENST00000308527|SNX33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7635192871094 2 436.763635 871.512717 -0.67271 -0.00029381 0.0032626 1.425E-06 -0.66944 -0.00029239 436.76358690007345 30.411 0.32322 30.411 30.263 30.587 0 46 15 4 0 0 0 0.42423 1 15860 15860 42.095 0 1 53436000 68061 8337 45263 46281 79515 79515 0.071820887600893 VEKAYQVVE 9 Unmodified _VEKAYQVVE_ 0 0 0 REV__ENSG00000112234|ENST00000369244|FBXL4 REV__ENSG00000112234|ENST00000369244|FBXL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7842407226562 2 532.784764 1063.55498 0.71488 0.00038088 -0.14586 -7.771E-05 0.56903 0.00030317 532.7845403064476 41.162 0.49401 36.555 36.244 36.738 -4.6079 121 30 5 0 0 0 0.19127 1 24776 24776 24.021 4.6586 1 993750000 + 68062 18797 45264 46282 79516 79516 0.025740193778119647 VEKDKEMYHDY 11 Unmodified _VEKDKEMYHDY_ 0 0 0 ENSG00000179008|ENST00000321731|C14orf39 ENSG00000179008|ENST00000321731|C14orf39 ENSG00000179008|ENST00000321731|C14orf39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 728.822998046875 2 728.824292 1455.63403 NaN NaN NaN NaN NaN NaN NaN 58.859 1 58.859 58.359 59.359 0 0 0 0 0.94293 1 32780 32780 1.1933 0.84271 1 68063 8798 45265 46283 79517 79517 -0.07556121450215869 VEKEGSCTF 9 Unmodified _VEKEGSCTF_ 0 0 0 REV__ENST00000471457.1_1_1:165652161-165667723:-|nuORF REV__ENST00000471457.1_1_1:165652161-165667723:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.8160705566406 2 500.226225 998.437897 1.2126 0.00060657 -1.2624 -0.00063148 -0.049799 -2.4911E-05 500.2253846422579 71.789 0.35298 65.613 65.443 65.796 -6.1757 32 19 2 0 0 0 0.18882 1 46963 46963 3.5965 0 1 38841000 + 68064 20607 45266 46284 79518 79518 -0.06138461833438669 VEKELMVSVL 10 Unmodified _VEKELMVSVL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.2867431640625 2 573.825575 1145.6366 1.3025 0.00074742 -3.7046 -0.0021258 -2.4021 -0.0013784 573.8219855405451 87.889 0.11067 81.713 81.618 81.729 -6.1757 7 5 2 0 0 0 0.22811 1 57926 57926 10.074 0 1 9630500 68065 6155;16276 45267 46285 79519 79519 0.0696037874540707 VEKFPGRL 8 Unmodified _VEKFPGRL_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2796020507812 2 473.279452 944.544351 1.6152 0.00076446 -0.44472 -0.00021048 1.1705 0.00055398 473.2790776925017 47.623 0.41916 42.389 42.197 42.616 -5.2339 52 24 3 0 0 0 0.46494 2 29643 29515;29643 38.151 6.0342 1 23645000 + 68066 17205 45268 46286 79520;79521 79521 0.06986081514037323 VEKFPGRL 8 Unmodified _VEKFPGRL_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2807006835938 2 473.279452 944.544351 0.80868 0.00038273 0.95615 0.00045253 1.7648 0.00083526 473.27980659405523 77.781 0.58138 71.605 71.392 71.973 -6.1757 46 32 2 0 0 0 0.50673 2 50839 50839;50971 34.102 5.6156 1 9738600 + 68067 17205 45268 46286 79522;79523 79522 0.06986081514037323 VEKFPGRL 8 Unmodified _VEKFPGRL_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 473.279452 944.544351 1.0252 0.00048522 -1.3586 -0.00064298 -0.33334 -0.00015776 473.27860853153373 42.793 0.22602 42.793 42.663 42.889 0 0.18584 -0.0010521 NaN 38.151 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2097300 + 68068 17205 45268 46286 0.06986081514037323 VEKFPGRL 8 Unmodified _VEKFPGRL_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.279452 944.544351 0.2373 0.00011231 0.011757 5.5641E-06 0.24905 0.00011787 473.2793781626101 42.948 0.25368 42.638 42.505 42.759 -0.31039 0.030551 0.00024496 NaN 38.151 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 15023000 + 68069 17205 45268 46286 0.06986081514037323 VEKFPGRL 8 Unmodified _VEKFPGRL_ 0 0 0 REV__ENSG00000042429|ENST00000251871|MED17 REV__ENSG00000042429|ENST00000251871|MED17 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 473.279452 944.544351 1.6152 0.00076446 -0.44472 -0.00021048 1.1705 0.00055398 473.2790776925017 47.623 0.41916 42.389 42.197 42.616 -5.2339 -0.21821 -0.00018712 NaN 38.151 52 24 3 NaN NaN NaN NaN 0 NaN NaN 0 23645000 + 68070 17205 45268 46286 0.06986081514037323 VEKGLVSKV 9 Unmodified _VEKGLVSKV_ 0 0 0 REV__nc|ENSG00000164808|Q14159-2|SPIDR REV__nc|ENSG00000164808|Q14159-2|SPIDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.8005981445312 2 479.800217 957.585882 -0.44364 -0.00021286 1.9205 0.00092144 1.4768 0.00070858 479.80121814526075 18.352 0.051384 18.375 18.353 18.404 0.023106 9 7 2 0 0 0 0.4887 1 9205 9205 8.1555 1.4324 1 233330 + 68071 21952 45269 46287 79524 79524 0.10539217482710228 VEKHLNAQL 9 Unmodified _VEKHLNAQL_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2985229492188 2 526.298373 1050.58219 -0.40265 -0.00021191 0.42226 0.00022224 0.019618 1.0325E-05 526.2987446317554 30.485 0.14342 30.485 30.402 30.546 0 11 6 2 0 0 0 0.1685 1 15844 15844 26.268 1.2772 1 1389700 68072 7037 45270 46288 79525 79525 0.058925477088678235 VEKHLNAQL 9 Unmodified _VEKHLNAQL_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2008666992188 3 351.201341 1050.58219 NaN NaN NaN NaN NaN NaN NaN 30.459 1 30.459 29.959 30.959 0 0 0 0 0.15549 1 15825 15825 27.223 1.2025 1 68073 7037 45270 46288 79526 79526 0.058925477088678235 VEKHLNAQL 9 Unmodified _VEKHLNAQL_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2016906738281 3 351.201341 1050.58219 1.5027 0.00052774 -0.35428 -0.00012442 1.1484 0.00040332 351.20127047034026 34.393 0.41245 30.297 30.106 30.518 -4.0951 38 23 2 0 0 0 0.024882 2 19791 19791;19916 53.404 1.9888 1 18582000 68074 7037 45270 46288 79527;79528 79527 0.058925477088678235 VEKHLNAQL 9 Unmodified _VEKHLNAQL_ 0 0 0 nc|ENSG00000163635|O15265-3|ATXN7;ENST00000474112.5_1_3:63898274-63982174:+|nuORF;ENSG00000163635|ENST00000674280|ATXN7;nc|ENSG00000163635|O15265-2|ATXN7;ENST00000484668.1_1_3:63973932-63976536:+|nuORF nc|ENSG00000163635|O15265-3|ATXN7 nc|ENSG00000163635|O15265-3|ATXN7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 351.201341 1050.58219 0.51549 0.00018104 -4.7966 -0.0016846 -4.2811 -0.0015035 351.19893237355814 30.439 0.26573 30.358 30.28 30.546 -0.080429 0.030443 -0.0045139 NaN 53.404 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 764760 68075 7037 45270 46288 0.058925477088678235 VEKHWRLI 8 Unmodified _VEKHWRLI_ 0 0 0 ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B ENSG00000130741|ENST00000253039|EIF2S3 ENSG00000130741|ENST00000253039|EIF2S3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.8811950683594 3 360.881943 1079.624 NaN NaN NaN NaN NaN NaN NaN 26.029 1 26.056 25.556 26.556 0.026951 0 0 0 0.95254 1 13491 13491 10.074 1.6296 1 68076 4251 45271 46289 79529 79529 0.08737148188038191 VEKKRKRRKKK 11 Unmodified _VEKKRKRRKKK_ 0 0 0 REV__ENSG00000128602|ENST00000249373|SMO REV__ENSG00000128602|ENST00000249373|SMO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 742.504638671875 2 742.504618 1482.99468 NaN NaN NaN NaN NaN NaN NaN 104.3 1 104.25 103.75 104.75 -0.048737 0 0 0 0.9435 1 57909 57909 0 0 1 + 68077 19623 45272 46290 79530 79530 0.2725053350707185 VEKLCICQF 9 Unmodified _VEKLCICQF_ 0 0 0 ENST00000261798.9_1_5:148876006-148876138:-|nuORF ENST00000261798.9_1_5:148876006-148876138:-|nuORF ENST00000261798.9_1_5:148876006-148876138:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2747802734375 2 541.772288 1081.53002 -0.57692 -0.00031256 1.6996 0.00092077 1.1226 0.00060821 541.7730450413919 77.17 0.35099 76.688 76.476 76.827 -0.4826 37 15 3 0 0 0 0.49272 1 42181 42181 7.9102 0 1 1882900 68078 11252 45273 46291 79531 79531 -0.007480750207832898 VEKLSGDEEFF 11 Unmodified _VEKLSGDEEFF_ 0 0 0 REV__ENST00000517431.1_1_8:17946857-17947013:-|nuORF REV__ENST00000517431.1_1_8:17946857-17947013:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 650.3079223632812 2 650.3088 1298.60305 0.50455 0.00032811 -0.452 -0.00029394 0.052543 3.4169E-05 650.308205787528 42.512 0.28194 42.512 42.362 42.644 0 23 13 2 0 0 0 0.68777 1 23031 23031 1.4819 0 1 2627400 + 68079 21747 45274 46292 79532 79532 -0.034309514928281715 VEKMIDPKACL 11 Unmodified _VEKMIDPKACL_ 0 0 0 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 ENSG00000206075|ENST00000382771|SERPINB5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 623.7744140625 2 623.830334 1245.64612 1.0574 0.00065962 1.3545 0.000845 2.4119 0.0015046 624.3333055923084 102.71 0.10079 96.53 96.481 96.581 -6.1757 34 22 2 0 0 0 0.2919 1 68895 68895 12.873 2.0731 1 5856900 68080 10392 45275 46293 79533 79533 0.03311823759281651 VEKPQAVKI 9 Unmodified _VEKPQAVKI_ 0 0 0 REV__nc|ENSG00000152795|O14979-3|HNRNPDL REV__nc|ENSG00000152795|O14979-3|HNRNPDL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7636413574219 2 506.313492 1010.61243 -0.085815 -4.3449E-05 -0.69909 -0.00035396 -0.78491 -0.00039741 506.3131002234577 65.186 0.40526 64.702 64.47 64.876 -0.48428 34 18 2 0 0 0 0.16895 1 35510 35510 24.021 0 1 3045200 + 68081 21138 45276 46294 79534 79534 0.1075490637402936 VEKQAVKA 8 Unmodified _VEKQAVKA_ 0 0 0 REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7640991210938 2 436.763635 871.512717 -0.35197 -0.00015373 0.2378 0.00010386 -0.11417 -4.9866E-05 436.76387228139896 18.776 0.14022 18.776 18.703 18.843 0 16 10 2 0 0 0 0.79783 1 9361 9361 7.9102 0 1 294830 + 68082 28111 45277 46295 79535 79535 0.071820887600893 VEKQAVKA 8 Unmodified _VEKQAVKA_ 0 0 0 REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF REV__ENST00000508037.1_1_5:111788403-111788643:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.7639770507812 2 436.763635 871.512717 0.1516 6.6212E-05 0.66966 0.00029248 0.82125 0.00035869 436.76415539112975 30.148 0.1644 30.178 30.091 30.255 0.030104 12 6 2 0 0 0 0.70294 1 15776 15776 16.942 0 1 531770 + 68083 28111 45277 46295 79536 79536 0.071820887600893 VEKSLVHTRA 10 Unmodified _VEKSLVHTRA_ 0 0 0 REV__ENSG00000169683|ENST00000306688|LRRC45 REV__ENSG00000169683|ENST00000306688|LRRC45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.55810546875 3 380.555895 1138.64586 0.2702 0.00010283 3.6198 0.0013775 3.89 0.0014804 380.55777376816167 62.095 0.29049 62.062 61.869 62.16 -0.032787 24 14 2 0 0 0 0.70151 1 33897 33897 1.3296 0.31607 1 6684400 + 68084 22416 45278 46296 79537 79537 0.08207908145959664 VEKSRQKY 8 Unmodified _VEKSRQKY_ 0 0 0 nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1;NBEAL1|p.D1379Vfs*6|1|0.07|ENSG00000144426|chr2:203136083-203136084|-/TG|frameshift_variant nc|ENSG00000144426|Q6ZS30-1|NBEAL1 nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.574951171875 1 1037.57382 1036.56654 0.097392 0.00010105 0.94719 0.00098278 1.0446 0.0010838 1037.5760932957103 36.686 0.085964 36.708 36.661 36.747 0.021545 5 3 2 0 0 0 8.7369 1 19458 19458 0.79363 0 1 1532500 68085 5608 45279 46297 79538 79538 0.049722611918241455 VEKSVVLL 8 Unmodified _VEKSVVLL_ 0 0 0 REV__nc|ENSG00000157870|Q8TBF2-2|PRXL2B REV__nc|ENSG00000157870|Q8TBF2-2|PRXL2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7835998535156 2 443.784036 885.553519 NaN NaN NaN NaN NaN NaN NaN 90.634 1 90.677 90.177 91.177 0.042175 0 0 0 0.97444 1 50417 50417 2.8892 0.31174 1 + 68086 29727 45280 46298 79539 79539 0.10616430079721795 VEKYLRRR 8 Unmodified _VEKYLRRR_ 0 0 0 nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF nc|ENSG00000135636|O75923-15|DYSF nc|ENSG00000135636|O75923-15|DYSF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3452758789062 2 560.340907 1118.66726 NaN NaN NaN NaN NaN NaN NaN 102.7 1 102.65 102.15 103.15 -0.047928 0 0 0 0.97444 1 57041 57041 0.6015 0.076735 1 68087 4728 45281 46299 79540 79540 0.11267337965296065 VELCLSEIFL 10 Unmodified _VELCLSEIFL_ 0 0 0 ENST00000554383.5_3_14:21702260-21737544:-|nuORF;ENST00000554891.5_1_14:21702949-21737544:-|nuORF ENST00000554383.5_3_14:21702260-21737544:-|nuORF ENST00000554383.5_3_14:21702260-21737544:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3150634765625 2 583.3123 1164.61005 0.63441 0.00037006 1.8133 0.0010577 2.4477 0.0014278 583.3135715294007 73.905 0.22572 73.43 73.323 73.549 -0.47588 18 11 2 0 0 0 0.6606 1 40432 40432 7.2892 0 1 977650 68088 15210 45282 46300 79541 79541 0.034326898540712136 VELEELAKY 9 Unmodified _VELEELAKY_ 0 0 0 ENST00000396401.7_1_8:54880629-54882983:-|nuORF ENST00000396401.7_1_8:54880629-54882983:-|nuORF ENST00000396401.7_1_8:54880629-54882983:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.29248046875 2 547.292422 1092.57029 0.21406 0.00011715 0.57326 0.00031374 0.78732 0.00043089 547.292715667084 101.88 0.10716 101.77 101.7 101.81 -0.11613 10 4 3 0 0 0 0.30562 1 55600 55600 16.942 1.0951 1 1486300 68089 12793 45283 46301 79542 79542 0.0277088617501704 VELEELAKY 9 Unmodified _VELEELAKY_ 0 0 0 ENST00000396401.7_1_8:54880629-54882983:-|nuORF ENST00000396401.7_1_8:54880629-54882983:-|nuORF ENST00000396401.7_1_8:54880629-54882983:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2951049804688 2 547.292422 1092.57029 0.97486 0.00053353 0.97692 0.00053466 1.9518 0.0010682 547.2937037386424 102.4 0.13246 96.227 96.148 96.28 -6.1757 18 11 3 0 0 0 0.2001 1 68716 68716 23.148 1.4018 1 5361200 68090 12793 45283 46301 79543 79543 0.0277088617501704 VELFEKEY 8 Unmodified _VELFEKEY_ 0 0 0 REV__ENSG00000214102|ENST00000397541|WEE2 REV__ENSG00000214102|ENST00000397541|WEE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7662963867188 2 528.76604 1055.51753 0.57856 0.00030592 -1.4503 -0.00076685 -0.8717 -0.00046093 528.7654391563452 67.982 0.25858 67.5 67.299 67.558 -0.48219 14 11 2 0 0 0 0.6895 1 37160 37160 18.135 1.1927 1 1417400 + 68091 24307 45284 46302 79544 79544 -0.00801071887804028 VELGMFHQL 9 Unmodified _VELGMFHQL_ 0 0 0 REV__ENST00000467910.5_1_9:136231851-136242840:-|nuORF REV__ENST00000467910.5_1_9:136231851-136242840:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.3048095703125 2 537.276052 1072.53755 0.71978 0.00038672 -2.2714 -0.0012204 -1.5516 -0.00083364 537.7772816250804 75.401 0.41316 69.226 68.963 69.376 -6.1757 36 22 2 0 0 0 0.16418 1 49293 49293 13.906 0 1 8131900 + 68092 27442 45285 46303 79545 79545 0.004184005711522332 VELGPFKR 8 Unmodified _VELGPFKR_ 0 0 0 ENST00000576313.1_1_17:55156597-55162272:-|nuORF ENST00000576313.1_1_17:55156597-55162272:-|nuORF ENST00000576313.1_1_17:55156597-55162272:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.2796020507812 2 473.279452 944.544351 0.37866 0.00017921 0.17643 8.3502E-05 0.55509 0.00026271 473.27947714757806 42.618 0.19434 42.609 42.491 42.686 -0.0088196 15 8 2 0 0 0 0.57045 1 22816 22816 28.487 1.6032 1 8130600 68093 15523 45286 46304 79546 79546 0.06986081514037323 VELGRGSHR 9 Unmodified _VELGRGSHR_ 0 0 0 REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2 REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7779235839844 2 505.778139 1009.54173 0.24701 0.00012493 -0.71688 -0.00036258 -0.46986 -0.00023765 505.77782610537395 20.842 0.22277 20.852 20.72 20.943 0.010553 28 11 3 0 0 0 0.55775 1 10624 10624 3.9444 3.9444 1 19475000 + 68094 29907 45287 46305 79547 79547 0.037336261090899825 VELGRGSHR 9 Unmodified _VELGRGSHR_ 0 0 0 REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2 REV__nc|ENSG00000204130|Q8WXA3-1|RUFY2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 505.778139 1009.54173 -0.72023 -0.00036428 0.74219 0.00037539 0.021961 1.1108E-05 505.77884570050225 20.886 0.090866 20.915 20.865 20.956 0.028357 0.031155 0.0013752 NaN 3.9444 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 482600 + 68095 29907 45287 46305 0.037336261090899825 VELIDLLPQ 9 Unmodified _VELIDLLPQ_ 0 0 0 REV__nc|ENSG00000142606|Q495T6-2|MMEL1 REV__nc|ENSG00000142606|Q495T6-2|MMEL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.3056640625 2 520.305332 1038.59611 0.37924 0.00019732 0.43404 0.00022584 0.81328 0.00042315 520.3055129788621 96.592 1.1769 96.592 95.633 96.81 0 184 80 4 0 0 0 0.1773 1 53393 53393 25.399 0 1 8040700 + 68096 29671 45288 46306 79548 79548 0.07835780417281057 VELINKCNS 9 Unmodified _VELINKCNS_ 0 0 0 nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4;ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF nc|ENSG00000103496|Q12846-2|STX4 nc|ENSG00000103496|Q12846-2|STX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.263671875 2 510.263142 1018.51173 1.9796 0.0010101 -1.3216 -0.00067437 0.65798 0.00033574 510.26264851546733 81.997 0.30991 82.058 81.886 82.196 0.061226 24 12 3 0 0 0 0.15471 1 45349 45349 27.629 2.2295 1 5018100 68097 2147 45289 46307 79549 79549 0.0032150632887351094 VELINKCNS 9 Unmodified _VELINKCNS_ 0 0 0 nc|ENSG00000103496|Q12846-2|STX4;ENSG00000103496|ENST00000313843|STX4;ENST00000493902.5_1_16:31047079-31051121:+|nuORF;ENST00000487411.5_1_16:31045754-31051121:+|nuORF nc|ENSG00000103496|Q12846-2|STX4 nc|ENSG00000103496|Q12846-2|STX4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 510.263142 1018.51173 0.35615 0.00018173 0.015883 8.1044E-06 0.37204 0.00018984 510.26312899074634 82.708 0.41794 82.21 82.03 82.448 -0.49751 0.076209 0.0003367 NaN 27.629 53 17 4 NaN NaN NaN NaN 0 NaN NaN 0 5623500 68098 2147 45289 46307 0.0032150632887351094 VELKPHDVR 9 Unmodified _VELKPHDVR_ 0 0 0 ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR ENSG00000119973|ENST00000239032|PRLHR MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8114013671875 2 546.811648 1091.60874 0.58152 0.00031798 -1.516 -0.00082899 -0.93452 -0.00051101 546.8114374835116 67.091 1.9067 60.916 59.965 61.871 -6.1757 249 108 3 0 0 0 0.15471 1 43613 43613 27.629 1.3607 1 75944000 68099 3487 45290 46308 79550 79550 0.066602366001689 VELLHPQE 8 Unmodified _VELLHPQE_ 0 0 0 REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7571105957031 2 482.758549 963.502546 0.17972 8.6763E-05 -1.1623 -0.00056111 -0.98257 -0.00047435 482.75795414225786 61.823 0.31114 61.823 61.663 61.974 0 17 13 2 0 0 0 0.62219 1 34478 34478 24.021 2.2739 1 1617100 + 68100 29253 45291 46309 79551 79551 0.019334810348595965 VELLKETGEF 10 Unmodified _VELLKETGEF_ 0 0 0 REV__ENSG00000123505|ENST00000368885|AMD1 REV__ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8765563964844 3 388.876411 1163.6074 -0.001479 -5.7516E-07 1.2295 0.00047814 1.2281 0.00047757 388.8767863985729 18.543 0.59471 18.549 18.244 18.839 0.0060463 58 33 3 0 0 0 0.69385 1 9451 9451 3.5871 0.74377 1 1234700 + 68101 19392 45292 46310 79552 79552 0.03214557720752964 VELLKETGEF 10 Unmodified _VELLKETGEF_ 0 0 0 REV__ENSG00000123505|ENST00000368885|AMD1 REV__ENSG00000123505|ENST00000368885|AMD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.8773193359375 3 388.876411 1163.6074 1.1953 0.00046482 0.94826 0.00036876 2.1435 0.00083358 388.87675373281377 18.821 0.94656 16.2 16.014 16.96 -2.6215 144 75 4 0 0 0 0.65023 1 10281 10281 8.4443 0.49891 1 35599000 + 68102 19392 45292 46310 79553 79553 0.03214557720752964 VELNSVPP 8 Unmodified _VELNSVPP_ 0 0 0 REV__ZBTB38|p.T551Nfs*9|1|0.14|ENSG00000177311|chr3:141444032-141444033|-/A|frameshift_variant REV__ZBTB38|p.T551Nfs*9|1|0.14|ENSG00000177311|chr3:141444032-141444033|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.4619750976562 1 854.46181 853.454533 0.34467 0.00029451 0.76668 0.0006551 1.1114 0.00094961 854.462406441218 57.092 0.27868 57.092 56.922 57.201 0 20 11 2 0 0 0 0.48583 2 31822 31719;31822 36.127 7.6402 1 2203200 + 68103 22977 45293 46311 79554;79555 79555 0.021944071148027433 VELPFAGP 8 Unmodified _VELPFAGP_ 0 0 0 REV__ENSG00000140527|ENST00000268130|WDR93 REV__ENSG00000140527|ENST00000268130|WDR93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.445556640625 1 829.445431 828.438155 0.53355 0.00044255 -0.31457 -0.00026092 0.21898 0.00018163 829.4454027515865 79.743 0.35797 79.254 79.096 79.454 -0.48932 27 15 2 0 0 0 0.57408 2 43652 43652;43754 28.173 1.832 1 1340300 + 68104 20481 45294 46312 79556;79557 79556 0.017073259487119685 VELPRGPGPH 10 Unmodified _VELPRGPGPH_ 0 0 0 REV__ENST00000337288.9_2_2:96874439-96874535:-|nuORF REV__ENST00000337288.9_2_2:96874439-96874535:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1058.911376953125 1 1058.57415 1057.56688 0.95821 0.0010143 1.0247 0.0010848 1.9829 0.0020991 1059.5775449952387 55.221 0.20284 49.3 49.241 49.444 -5.9211 14 12 2 0 0 0 0.23117 1 35167 35167 11.64 7.3111 1 12283000 + 68105 25658 45295 46313 79558 79558 0.04039680911660071 VELQLSHVK 9 Unmodified _VELQLSHVK_ 0 0 0 ENSG00000172262|ENST00000682664|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 ENSG00000172262|ENST00000682664|ZNF131 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5417785644531 3 351.541475 1051.60259 1.8309 0.00064364 0.036302 1.2762E-05 1.8672 0.0006564 351.54112021006813 34.201 0.30279 30.216 29.984 30.287 -3.9853 30 16 3 0 0 0 0.45045 1 19676 19676 6.6304 0 1 5944700 68106 8196 45296 46314 79559 79559 0.07885718368675043 VELRLRLI 8 Unmodified _VELRLRLI_ 0 0 0 ENST00000559429.1_1_15:82449944-82456284:-|nuORF ENST00000559429.1_1_15:82449944-82456284:-|nuORF ENST00000559429.1_1_15:82449944-82456284:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3381042480469 2 506.337301 1010.66005 1.5196 0.00076943 -0.50661 -0.00025652 1.013 0.00051292 506.3369525236169 103.81 0.15726 97.632 97.558 97.715 -6.1757 63 37 2 0 0 0 0.80992 1 69542 69542 0.69038 0 1 15689000 68107 15294 45297 46315 79560 79560 0.15514605364876388 VELRPSMLLF 10 Unmodified _VELRPSMLLF_ 0 0 0 REV__nc|ENSG00000133317|Q96DT0-2|LGALS12 REV__nc|ENSG00000133317|Q96DT0-2|LGALS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.84130859375 2 602.841559 1203.66857 0.76157 0.00045911 -0.41038 -0.0002474 0.35119 0.00021171 602.8412958265017 102.8 0.059204 96.622 96.591 96.65 -6.1757 43 19 3 0 0 0 0.32072 1 68961 68961 26.268 7.0112 1 14731000 + 68108 19920 45298 46316 79561 79561 0.07487791219205064 VELRQVSDRLV 11 Unmodified _VELRQVSDRLV_ 0 0 0 REV__ENSG00000130173|ENST00000252453|ANGPTL8 REV__ENSG00000130173|ENST00000252453|ANGPTL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.5900573730469 3 438.589376 1312.7463 0.37417 0.00016411 0.23382 0.00010255 0.608 0.00026666 438.5894818752679 28.59 0.18682 28.62 28.494 28.681 0.029564 16 6 3 0 0 0 0.68282 1 14877 14877 5.8681 0.46543 1 2174700 + 68109 19700 45299 46317 79562 79562 0.10243520408926088 VELRWRRWRIR 11 Unmodified _VELRWRRWRIR_ 0 0 0 REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.485107421875 2 813.484217 1624.95388 NaN NaN NaN NaN NaN NaN NaN 96.335 1 96.328 95.828 96.828 -0.007019 0 0 0 0.9435 1 53506 53506 0 0 1 + 68110 24923 45300 46318 79563 79563 0.16640192187469438 VELRWRRWRIR 11 Unmodified _VELRWRRWRIR_ 0 0 0 REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 813.4879150390625 2 813.484217 1624.95388 NaN NaN NaN NaN NaN NaN NaN 100.01 1 93.836 93.336 94.336 -6.1757 0 0 0 0.94307 1 66779 66779 0.30703 0 1 + 68111 24923 45300 46318 79564 79564 0.16640192187469438 VELVQHQEL 9 Unmodified _VELVQHQEL_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7957153320312 2 547.795663 1093.57677 -0.23877 -0.0001308 -0.47992 -0.0002629 -0.71869 -0.0003937 547.7951946627896 41.47 0.4606 41.47 41.344 41.804 0 40 23 3 0 0 0 0.08691 1 22340 22340 36.127 0 1 20957000 + 68112 17605 45301 46319 79565 79565 0.03372824126381602 VELVVQVP 8 Unmodified _VELVVQVP_ 0 0 0 nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7697143554688 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 61.873 1 61.873 61.373 62.373 0 0 0 0 0.97444 1 34496 34496 5.2307 0 1 68113 5925 45302 46320 79566 79566 0.07671857045613706 VELWDDMF 8 Unmodified _VELWDDMF_ 0 0 0 nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 nc|ENSG00000214595|Q6ZMW3-2|EML6 MSMS AL20221201_MKP_PDAC_01 4 527.7301635742188 2 527.731143 1053.44773 NaN NaN NaN NaN NaN NaN NaN 98.582 1 92.407 91.907 92.907 -6.1757 0 0 0 0.63034 1 65411 65411 32.117 11.246 1 68114 10499 45303 46321 79567 79567 -0.07685273828087702 VELWVLTF 8 Unmodified _VELWVLTF_ 0 0 0 ENST00000461409.1_1_7:18542099-18542232:+|nuORF;ENST00000430454.5_1_7:18535437-18542232:+|nuORF ENST00000461409.1_1_7:18542099-18542232:+|nuORF ENST00000461409.1_1_7:18542099-18542232:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1006.555541992188 1 1006.5608 1005.55352 0.26738 0.00026914 -0.26186 -0.00026358 0.0055225 5.5587E-06 1006.5609232946703 30.293 0.25539 30.323 30.137 30.393 0.030104 15 10 2 0 0 0 8.7369 1 15865 15865 0.79363 0 1 633860 68115 13245 45304 46322 79568 79568 0.05096430079697711 VEMERPTWQI 10 Unmodified _VEMERPTWQI_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8232421875 2 644.821355 1287.62816 NaN NaN NaN NaN NaN NaN NaN 28.22 1 28.173 27.673 28.673 -0.046408 0 0 0 0.99514 1 14562 14562 1.1933 0.23107 1 + 68116 22858 45305 46323 79569 79569 -0.004151751712242913 VEMGPVNR 8 Unmodified _VEMGPVNR_ 0 0 0 REV__ENST00000495936.5_1_7:102074039-102076773:+|nuORF REV__ENST00000495936.5_1_7:102074039-102076773:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2313232421875 2 451.231645 900.448736 0.21224 9.5771E-05 -1.9695 -0.00088872 -1.7573 -0.00079295 451.2306989890824 59.724 0.2622 59.233 59.11 59.372 -0.49079 21 12 2 0 0 0 0.80232 1 32514 32514 5.2307 0 1 2032800 + 68117 27717 45306 46324 79570 79570 -0.005470146685070176 VEMKANSWR 9 Unmodified _VEMKANSWR_ 0 0 0 REV__ENST00000460755.1_1_10:71978474-71978561:-|nuORF REV__ENST00000460755.1_1_10:71978474-71978561:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1905822753906 3 374.190447 1119.54951 -0.56084 -0.00020986 0.79397 0.0002971 0.23313 8.7235E-05 374.1907963574462 18.239 0.14482 18.253 18.159 18.304 0.013866 49 28 2 0 0 0 0.56345 1 9115 9115 2.086 0 1 1407000 + 68118 27302 45307 46325 79571 79571 -0.00547982685657189 VEMNRKFR 8 Unmodified _VEMNRKFR_ 0 0 0 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 ENSG00000077274|ENST00000324068|CAPN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2921142578125 2 540.292568 1078.57058 -0.22196 -0.00011992 -1.8397 -0.00099397 -2.0617 -0.0011139 540.2917261000217 32.193 0.18813 32.064 31.961 32.149 -0.12915 12 6 2 0 0 0 0.79669 1 16759 16759 8.5933 0.68312 1 1724700 68119 1212 45308 46326 79572 79572 0.03444027413866024 VEMQIFFY 8 Unmodified _VEMQIFFY_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.760498046875 2 538.759704 1075.50485 0.25472 0.00013723 1.7809 0.00095946 2.0356 0.0010967 538.7605631146546 97.442 0.22801 97.442 97.349 97.577 0 13 9 2 0 0 0 0.80143 1 53851 53851 5.7604 3.1829 1 398910 68120 5637 45309 46327 79573 79573 -0.029878065516641072 VENDFEVF 8 Unmodified _VENDFEVF_ 0 0 0 REV__ENSG00000077312|ENST00000243563|SNRPA REV__ENSG00000077312|ENST00000243563|SNRPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.445068359375 1 998.446553 997.439277 -0.72751 -0.00072638 1.2831 0.0012811 0.55562 0.00055475 998.4479681938511 48.683 0.48004 48.683 48.452 48.932 0 52 22 3 0 0 0 0.54555 2 26642 26642;26868 30.637 8.8899 1 4095400 + 68121 17608 45310 46328 79574;79575 79574 -0.05954504473038469 VENDPLTII 9 Unmodified _VENDPLTII_ 0 0 0 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 REV__nc|ENSG00000137261|Q5VV43-4|KIAA0319 MSMS AL20221201_MKP_PDAC_01 4 507.2783508300781 2 507.279315 1012.54408 NaN NaN NaN NaN NaN NaN NaN 76.056 1 69.88 69.38 70.38 -6.1757 0 0 0 0.10759 1 49751 49751 41.84 1.3911 1 + 68122 20228 45311 46329 79576 79576 0.03830617003529824 VENEDQQEVI 10 Unmodified _VENEDQQEVI_ 0 0 0 nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MSMS AL20221201_MKP_PDAC_01 4 601.7785034179688 2 601.780407 1201.54626 NaN NaN NaN NaN NaN NaN NaN 48.413 1 43.179 42.679 43.679 -5.2339 0 0 0 0.71157 1 30150 30150 16.149 0.90062 1 68123 6182 45312 46330 79577 79577 -0.046449990493329096 VENEDQQEVI 10 Unmodified _VENEDQQEVI_ 0 0 0 nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 nc|ENSG00000152404|Q2TBE0-3|CWF19L2 MSMS AL20221201_MKP_PDAC_01 4 601.77978515625 2 601.780407 1201.54626 NaN NaN NaN NaN NaN NaN NaN 48.688 1 43.292 42.792 43.792 -5.3961 0 0 0 0.68184 1 30352 30352 17.443 1.2935 1 68124 6182 45312 46330 79578 79578 -0.046449990493329096 VENKVAAA 8 Unmodified _VENKVAAA_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY;REV__ENSG00000075539|ENST00000358350|FRYL REV__ENSG00000075539|ENST00000358350|FRYL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2282409667969 2 401.226885 800.439217 NaN NaN NaN NaN NaN NaN NaN 16.837 1 16.842 16.342 17.342 0.0050564 0 0 0 0.97444 1 8461 8461 2.8892 0.31174 1 + 68125 17572;17544 45313 46331 79579 79579 0.031015403176070322 VENLNHCE 8 Unmodified _VENLNHCE_ 0 0 0 nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2850646972656 2 479.208366 956.40218 0.6862 0.00032883 1.2687 0.00060799 1.9549 0.00093682 479.209058243335 72.139 0.25273 71.663 71.499 71.752 -0.47609 17 10 2 0 0 0 8.7369 1 39437 39437 7.9102 0 1 491040 68126 1764 45314 46332 79580 79580 -0.0777649929045765 VENPGCYPLTF 11 Unmodified _VENPGCYPLTF_ 0 0 0 REV__ENSG00000197309|ENST00000641351|OR10D3 REV__ENSG00000197309|ENST00000641351|OR10D3 MSMS AL20221201_MKP_PDAC_01 4 620.2883911132812 2 620.289356 1238.56416 NaN NaN NaN NaN NaN NaN NaN 87.686 1 81.51 81.01 82.01 -6.1757 0 0 0 0.18502 1 57830 57830 40.239 10.014 1 + 68127 23915 45315 46333 79581 79581 -0.04557955328186836 VENTVAWSVS 10 Unmodified _VENTVAWSVS_ 0 0 0 REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.271484375 2 546.272021 1090.52949 -0.40464 -0.00022104 -1.4939 -0.00081607 -1.8985 -0.0010371 546.2717887238869 28.706 0.3365 28.706 28.503 28.839 0 35 16 3 0 0 0 0.016642 1 14838 14838 78.728 6.8058 1 7221200 + 68128 22897 45316 46334 79582 79582 -0.01215455144642874 VENTVAWSVS 10 Unmodified _VENTVAWSVS_ 0 0 0 REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2735595703125 2 546.272021 1090.52949 0.59618 0.00032567 -0.54566 -0.00029808 0.05052 2.7598E-05 546.271751146879 32.731 0.35793 28.875 28.652 29.01 -3.8562 44 18 3 0 0 0 0.01074 2 18612 18612;18747 86.332 23.759 1 30526000 + 68129 22897 45316 46334 79583;79584 79583 -0.01215455144642874 VENTVAWSVS 10 Unmodified _VENTVAWSVS_ 0 0 0 REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF REV__ENST00000486966.1_1_2:101999472-102003919:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 546.272021 1090.52949 0.59618 0.00032567 -0.54566 -0.00029808 0.05052 2.7598E-05 546.271751146879 32.731 0.35793 28.875 28.652 29.01 -3.8562 0.084582 6.4523E-05 NaN 86.332 44 18 3 NaN NaN NaN NaN 0 NaN NaN 0 30526000 + 68130 22897 45316 46334 -0.01215455144642874 VEPCRSDHWPL 11 Unmodified _VEPCRSDHWPL_ 0 0 0 ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP;ENST00000533045.5_1_11:65651447-65651972:-|nuORF;ENST00000534032.5_1_11:65651447-65652256:-|nuORF;ENST00000525765.5_1_11:65651447-65652579:-|nuORF ENSG00000172500|ENST00000357519|FIBP ENSG00000172500|ENST00000357519|FIBP MSMS AL20221201_MKP_PDAC_01 4 446.87841796875 3 446.880162 1337.61866 NaN NaN NaN NaN NaN NaN NaN 84.533 1 78.357 77.857 78.857 -6.1757 0 0 0 0.88164 1 55616 55616 6.6235 0 1 68131 8227 45317 46335 79585 79585 -0.03664943456738001 VEPGDIVLL 9 Unmodified _VEPGDIVLL_ 0 0 0 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 ENSG00000069345|ENST00000317089|DNAJA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.5505981445312 1 954.550625 953.543348 -0.18309 -0.00017477 1.5981 0.0015254 1.415 0.0013507 954.5518899002008 78.596 0.29297 78.596 78.469 78.762 0 23 13 2 0 0 0 0.55775 1 43746 43746 3.9444 2.1002 1 644310 68132 1002 45318 46336 79586 79586 0.06471822354478718 VEPKHVEVK 9 Unmodified _VEPKHVEVK_ 0 0 0 REV__nc|ENSG00000162782|Q8NAT2|TDRD5 REV__nc|ENSG00000162782|Q8NAT2|TDRD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.808837890625 2 532.808574 1063.60259 0.49424 0.00026334 -0.33658 -0.00017934 0.15765 8.4E-05 532.8085808334965 44.052 0.8717 39.287 38.772 39.644 -4.7648 140 58 3 0 0 0 0.05447 2 26886 26749;26886 43.858 1.9027 1 364500000 + 68133 21693 45319 46337 79587;79588 79588 0.07333718368658992 VEPPEAIPEI 10 Unmodified _VEPPEAIPEI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 547.292724609375 2 547.292422 1092.57029 NaN NaN NaN NaN NaN NaN NaN 101 1 94.82 94.32 95.32 -6.1757 0 0 0 0.64375 1 67678 67678 19.257 1.122 1 68134 6400 45320 46338 79589 79589 0.027708861749943026 VEPQNRDLLL 10 Unmodified _VEPQNRDLLL_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.8342895507812 2 598.83532 1195.65609 NaN NaN NaN NaN NaN NaN NaN 47.048 1 47.048 46.548 47.548 0 0 0 0 0.81856 1 25745 25745 11.495 1.9507 1 + 68135 20360 45321 46339 79590 79590 0.0660847108051712 VEPRTKWDPY 10 Unmodified _VEPRTKWDPY_ 0 0 0 REV__ENSG00000184939|ENST00000563169|ZFP90 REV__ENSG00000184939|ENST00000563169|ZFP90 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883666992188 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 55.025 1 55.025 54.525 55.525 0 0 0 0 0.98914 1 30560 30560 0.77653 0 1 + 68136 23453 45322 46340 79591 79591 0.007201845634881465 VEPSHQHML 9 Unmodified _VEPSHQHML_ 0 0 0 REV__ENST00000576916.5_2_16:3534939-3535215:+|nuORF REV__ENST00000576916.5_2_16:3534939-3535215:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 359.8428344726562 3 359.843048 1076.50731 NaN NaN NaN NaN NaN NaN NaN 95.645 1 89.469 88.969 89.969 -6.1757 0 0 0 0.7243 1 63358 63358 5.2969 0 1 + 68137 29027 45323 46341 79592 79592 -0.02787958094017995 VEPTPGLF 8 Unmodified _VEPTPGLF_ 0 0 0 REV__ENSG00000090402|ENST00000264382|SI REV__ENSG00000090402|ENST00000264382|SI MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2319946289062 2 430.231636 858.448719 0.20051 8.6264E-05 0.26171 0.0001126 0.46222 0.00019886 430.2316674432771 85.213 0.57495 79.037 78.803 79.378 -6.1757 57 35 2 0 0 0 0.61462 1 56027 56027 24.674 0 1 28540000 + 68138 17857 45324 46342 79593 79593 0.013833086031468156 VEPVILCL 8 Unmodified _VEPVILCL_ 0 0 0 ENST00000590306.5_1_19:9529300-9529744:-|nuORF;ENST00000588933.5_1_19:9529293-9529744:-|nuORF ENST00000590306.5_1_19:9529300-9529744:-|nuORF ENST00000590306.5_1_19:9529300-9529744:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.26025390625 2 443.259339 884.504126 0.59475 0.00026363 0.3143 0.00013932 0.90905 0.00040295 443.25947736998177 99.659 0.27181 93.483 93.38 93.652 -6.1757 24 17 2 0 0 0 0.77907 1 66592 66592 10.183 0 1 40013000 68139 15658 45325 46343 79594 79594 0.05725398799256709 VEQDARRPRWF 11 Unmodified _VEQDARRPRWF_ 0 0 0 REV__nc|ENSG00000222009|C9JJ37-2|BTBD19 REV__nc|ENSG00000222009|C9JJ37-2|BTBD19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 730.3825073242188 2 730.381291 1458.74803 0.95465 0.00069726 0.16108 0.00011765 1.1157 0.00081491 730.381486598557 91.714 0.16067 85.538 85.435 85.596 -6.1757 13 8 2 0 0 0 0.59689 1 60603 60603 11.495 0.6952 1 9534700 + 68140 29948 45326 46344 79595 79595 0.037005742175324485 VEQEQKKVL 9 Unmodified _VEQEQKKVL_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.268310546875 2 550.819138 1099.62372 0.6533 0.00035985 -2.2141 -0.0012196 -1.5608 -0.00085973 550.8175008566493 54.84 0.2451 54.84 54.741 54.986 0 16 10 2 0 0 0 0.17718 1 30437 30437 20.454 5.6154 1 3100900 + 68141 23576 45327 46345 79596 79596 0.07789683677515313 VEQETPAP 8 Unmodified _VEQETPAP_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4220581054688 1 870.420339 869.413062 -0.2362 -0.00020559 0.51179 0.00044547 0.27559 0.00023988 870.4213961065714 44.583 0.11754 44.583 44.512 44.629 0 7 5 2 0 0 0 0.23628 1 24273 24273 64.236 2.8788 1 3473500 + 68142 24696 45328 46346 79597 79597 -0.02686773644529694 VEQETPAP 8 Unmodified _VEQETPAP_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 870.420339 869.413062 -0.2362 -0.00020559 0.51179 0.00044547 0.27559 0.00023988 870.4213961065714 44.583 0.11754 44.583 44.512 44.629 0 0 0 NaN 64.236 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3473500 + 68143 24696 45328 46346 -0.02686773644529694 VEQKLLDV 8 Unmodified _VEQKLLDV_ 0 0 0 REV__nc|ENSG00000151812|A4IF30-2|SLC35F4 REV__nc|ENSG00000151812|A4IF30-2|SLC35F4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2764892578125 2 472.276575 942.538597 0.38621 0.0001824 0.19745 9.3252E-05 0.58366 0.00027565 472.27668116409586 50.225 0.29319 50.225 50.096 50.389 0 35 13 3 0 0 0 0.63706 1 27766 27766 22.736 0 1 15117000 + 68144 21092 45329 46347 79598 79598 0.0650293821172454 VEQMPKKDWY 10 Unmodified _VEQMPKKDWY_ 0 0 0 ENSG00000170946|ENST00000465995|DNAJC24;ENST00000527601.5_1_11:31392283-31406146:+|nuORF;ENST00000532385.5_1_11:31392283-31429083:+|nuORF;nc|ENSG00000170946|Q6P3W2-2|DNAJC24;ENST00000529086.5_1_11:31392283-31436510:+|nuORF ENSG00000170946|ENST00000465995|DNAJC24 ENSG00000170946|ENST00000465995|DNAJC24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.3239135742188 2 662.323731 1322.63291 0.018973 1.2566E-05 1.6227 0.0010748 1.6417 0.0010873 662.3244938139277 35.975 0.17394 35.975 35.858 36.032 0 18 8 3 0 0 0 0.50362 1 19042 19042 16.149 0.90062 1 3768300 68145 8047 45330 46348 79599 79599 -0.015502910284567406 VEQNNLSDL 9 Unmodified _VEQNNLSDL_ 0 0 0 ENSG00000127804|ENST00000263092|METTL16;ENST00000571298.5_1_17:2367609-2378577:-|nuORF;nc|ENSG00000127804|Q86W50-2|METTL16 ENSG00000127804|ENST00000263092|METTL16 ENSG00000127804|ENST00000263092|METTL16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7945556640625 2 516.253828 1030.4931 0.33702 0.00017399 -0.55771 -0.00028792 -0.22069 -0.00011393 516.2537813656711 93.333 0.27336 92.876 92.75 93.023 -0.4574 23 11 3 0 0 0 0.21367 1 51083 51083 4.756 0 1 427710 68146 4026 45331 46349 79600 79600 -0.020923320413203328 VEQPVTVTI 9 Unmodified _VEQPVTVTI_ 0 0 0 REV__CON__P17697 REV__CON__P17697 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2820129394531 2 493.281857 984.549162 0.29613 0.00014607 0.067501 3.3297E-05 0.36363 0.00017937 493.2818092223497 77.171 0.49821 70.995 70.739 71.237 -6.1757 45 28 2 0 0 0 0.042911 1 50555 50555 48.346 4.4876 1 17977000 + + 68147 16849 45332 46350 79601 79601 0.056269208661547054 VEQQGLTH 8 Unmodified _VEQQGLTH_ 0 0 0 REV__ENST00000561487.1_1_16:2577913-2578724:+|nuORF REV__ENST00000561487.1_1_16:2577913-2578724:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2325134277344 2 456.232699 910.450845 -0.30448 -0.00013891 0.82832 0.00037791 0.52384 0.00023899 456.232748972923 27.803 0.24461 27.803 27.7 27.945 0 16 11 2 0 0 0 0.48669 1 14369 14369 36.044 0 1 948520 + 68148 21622 45333 46351 79602 79602 -0.007962626590369837 VEQVGTFG 8 Unmodified _VEQVGTFG_ 0 0 0 REV__nc|ENSG00000137098|Q99932-2|SPAG8 REV__nc|ENSG00000137098|Q99932-2|SPAG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 838.4168090820312 1 836.414859 835.407583 0.14301 0.00011962 0.39169 0.00032762 0.5347 0.00044723 836.4150701916932 74.916 0.37187 74.916 74.739 75.111 0 35 19 3 0 0 0 0.80975 1 41693 41693 0.79363 0 1 2349800 + 68149 29652 45334 46352 79603 79603 -0.016704524363149176 VEQVLVDAL 9 Unmodified _VEQVLVDAL_ 0 0 0 REV__ENST00000417336.5_1_2:191224783-191231435:+|nuORF REV__ENST00000417336.5_1_2:191224783-191231435:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2826843261719 2 493.281857 984.549162 0.42493 0.00020961 0.042036 2.0736E-05 0.46696 0.00023034 493.2818744874711 74.282 0.26741 74.282 74.121 74.388 0 21 12 2 0 0 0 0.42049 1 41311 41311 11.495 0.67078 1 1147500 + 68150 21082 45335 46353 79604 79604 0.056269208661547054 VERARSVTL 9 Unmodified _VERARSVTL_ 0 0 0 REV__nc|ENSG00000170579|O14490-7|DLGAP1 REV__nc|ENSG00000170579|O14490-7|DLGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.8043212890625 2 515.803823 1029.59309 0.39409 0.00020328 -0.15711 -8.1036E-05 0.23699 0.00012224 515.8037838734183 27.691 0.33252 24.654 24.435 24.768 -3.0365 30 16 2 0 0 0 0.23158 1 15297 15297 20.454 4.3045 1 19545000 + 68151 22493 45336 46354 79605 79605 0.07947950083143951 VERARSVTL 9 Unmodified _VERARSVTL_ 0 0 0 REV__nc|ENSG00000170579|O14490-7|DLGAP1 REV__nc|ENSG00000170579|O14490-7|DLGAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 515.803823 1029.59309 0.33854 0.00017462 0.31265 0.00016127 0.6512 0.00033589 515.8039148010942 24.332 0.17202 24.353 24.265 24.437 0.021185 -0.15062 0.00035837 NaN 20.454 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 6210900 + 68152 22493 45336 46354 0.07947950083143951 VERARSVTL 9 Unmodified _VERARSVTL_ 0 0 0 REV__nc|ENSG00000170579|O14490-7|DLGAP1 REV__nc|ENSG00000170579|O14490-7|DLGAP1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 515.803823 1029.59309 0.39409 0.00020328 -0.15711 -8.1036E-05 0.23699 0.00012224 515.8037838734183 27.691 0.33252 24.654 24.435 24.768 -3.0365 0.15062 -0.00012623 NaN 20.454 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 19545000 + 68153 22493 45336 46354 0.07947950083143951 VERFDHHCPWV 11 Unmodified _VERFDHHCPWV_ 0 0 0 ENSG00000188706|ENST00000357166|ZDHHC9;ENST00000523468.5_1_6:157963626-158049550:+|nuORF;nc|ENSG00000204160|Q9NUE0-2|ZDHHC18;nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14;ENSG00000204160|ENST00000374142|ZDHHC18 ENSG00000188706|ENST00000357166|ZDHHC9;ENSG00000204160|ENST00000374142|ZDHHC18 ENSG00000188706|ENST00000357166|ZDHHC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 712.8314208984375 2 712.830046 1423.64554 -0.058866 -4.1961E-05 1.254 0.00089388 1.1951 0.00085192 712.8310199972168 37.765 0.16584 37.765 37.68 37.846 0 13 7 2 0 0 0 0.71618 1 20165 20165 2.7352 0 1 1323300 68154 9686;10246 45337 46355 79606 79606 -0.049338348455648884 VERFTLKQYI 10 Unmodified _VERFTLKQYI_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.8854064941406 3 432.915201 1295.72377 0.66227 0.00028671 0.032222 1.395E-05 0.69449 0.00030066 432.91527161386745 26.757 0.30329 23.721 23.57 23.873 -3.0365 40 15 4 0 0 0 0.23946 1 14685 14685 1.7423 0 1 15299000 + 68155 21238 45338 46356 79607 79607 0.08773921011334096 VERKRHIG 8 Unmodified _VERKRHIG_ 0 0 0 nc|ENSG00000136895|Q5VVW2-3|GARNL3;nc|ENSG00000136895|Q5VVW2-2|GARNL3;nc|ENSG00000136895|Q5VVW2-5|GARNL3;ENSG00000136895|ENST00000373387|GARNL3 nc|ENSG00000136895|Q5VVW2-3|GARNL3 nc|ENSG00000136895|Q5VVW2-3|GARNL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7991027832031 2 497.798875 993.583196 -0.038173 -1.9002E-05 0.39635 0.0001973 0.35817 0.0001783 497.79911833341083 30.829 0.27877 30.859 30.713 30.992 0.030106 22 11 3 0 0 0 0.78849 1 16112 16112 9.3474 0 1 2306000 68156 4879 45339 46357 79608 79608 0.08614806868433789 VERLRIHQK 9 Unmodified _VERLRIHQK_ 0 0 0 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2065734863281 3 393.575401 1177.70437 -0.075711 -2.9798E-05 0.1529 6.0177E-05 0.077188 3.0379E-05 393.5754923294558 34.818 0.22033 34.846 34.753 34.973 0.027401 12 9 2 0 0 0 0.21874 1 18372 18372 1.1933 0 1 1572800 + 68157 20707 45340 46358 79609 79609 0.12263009511070777 VERLWEVMNE 10 Unmodified _VERLWEVMNE_ 0 0 0 REV__ENSG00000166266|ENST00000393094|CUL5 REV__ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.5498046875 3 435.5483 1303.62307 1.0897 0.00047463 -0.89986 -0.00039193 0.18987 8.2699E-05 435.54790762141266 19.323 1.8476 16.666 16.269 18.117 -2.6564 392 130 6 0 0 0 0.65282 1 10854 10854 4.7159 4.7159 1 1375000000 + 68158 22099 45341 46359 79610 79610 -0.01659479033810385 VERLWEVMNEE 11 Unmodified _VERLWEVMNEE_ 0 0 0 REV__ENSG00000166266|ENST00000393094|CUL5 REV__ENSG00000166266|ENST00000393094|CUL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 717.3402099609375 2 717.340109 1432.66566 NaN NaN NaN NaN NaN NaN NaN 95.643 1 95.274 94.774 95.774 -0.36814 0 0 0 0.9435 1 52238 52238 0 0 1 + 68159 22099 45342 46360 79611 79611 -0.03336128696241758 VERMREAV 8 Unmodified _VERMREAV_ 0 0 0 ENST00000440593.3_1_19:13255325-13260573:-|nuORF;ENSG00000104915|ENST00000587230|STX10 ENST00000440593.3_1_19:13255325-13260573:-|nuORF ENST00000440593.3_1_19:13255325-13260573:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2618408203125 2 495.263476 988.512399 -0.034657 -1.7164E-05 0.047274 2.3413E-05 0.012617 6.2489E-06 495.26236544754477 78.558 0.2561 78.072 77.957 78.213 -0.48596 19 10 2 0 0 0 0.74163 1 43021 43021 13.508 4.1604 1 824790 68160 2259 45343 46361 79612 79612 0.017683457685961912 VERRWWRRRLW 11 Unmodified _VERRWWRRRLW_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 849.984375 2 849.981841 1697.94913 NaN NaN NaN NaN NaN NaN NaN 17.204 1 17.209 16.709 17.709 0.0050564 0 0 0 0.9435 1 8667 8667 0 0 1 68161 11437 45344 46362 79613 79613 0.12807308044716592 VERRWWRRRLW 11 Unmodified _VERRWWRRRLW_ 0 0 0 ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF ENST00000284971.7_1_21:27102007-27107256:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 849.9844360351562 2 849.981841 1697.94913 NaN NaN NaN NaN NaN NaN NaN 88.017 1 88.07 87.57 88.57 0.053352 0 0 0 0.94301 1 48957 48957 0.35063 0.35063 1 68162 11437 45344 46362 79614 79614 0.12807308044716592 VERSDNLL 8 Unmodified _VERSDNLL_ 0 0 0 REV__ENSG00000171448|ENST00000373656|ZBTB26 REV__ENSG00000171448|ENST00000373656|ZBTB26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.254638671875 2 473.253631 944.49271 0.3563 0.00016862 -0.94423 -0.00044686 -0.58793 -0.00027824 473.25381172144444 38.571 0.40099 34.202 33.932 34.333 -4.3689 32 25 2 0 0 0 0.66338 1 22736 22736 20.454 3.3407 1 13913000 + 68163 22561 45345 46363 79615 79615 0.018242930294718462 VERTHLGI 8 Unmodified _VERTHLGI_ 0 0 0 REV__nc|ENSG00000145113|Q99102-3|MUC4 REV__nc|ENSG00000145113|Q99102-3|MUC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.767822265625 2 462.766709 923.518865 0.93732 0.00043376 -0.26241 -0.00012143 0.67491 0.00031233 462.76659880295955 38.143 0.53876 33.774 33.473 34.012 -4.3689 83 32 3 0 0 0 0.42423 1 22332 22332 42.095 7.6928 1 143620000 + 68164 20754 45346 46364 79616 79616 0.054046069916125816 VERTVKEVL 9 Unmodified _VERTVKEVL_ 0 0 0 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2174682617188 3 358.21688 1071.62881 1.1806 0.00042293 0.35196 0.00012608 1.5326 0.00054901 358.2170068443324 46.353 0.22137 41.273 41.082 41.304 -5.0805 21 14 2 0 0 0 0.19127 1 28606 28606 17.443 0 1 12930000 68165 5483 45347 46365 79617 79617 0.09585987540140195 VERTVKEVL 9 Unmodified _VERTVKEVL_ 0 0 0 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 ENSG00000143256|ENST00000368010|PFDN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 358.21688 1071.62881 -0.1207 -4.3238E-05 0.80858 0.00028965 0.68788 0.00024641 358.21723505320875 41.405 0.16423 41.102 41.028 41.192 -0.30304 -0.081812 -0.00054349 NaN 17.443 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1915100 68166 5483 45347 46365 0.09585987540140195 VERWQWIF 8 Unmodified _VERWQWIF_ 0 0 0 ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5391845703125 3 388.538064 1162.59236 -0.18607 -7.2293E-05 2.5543 0.00099246 2.3683 0.00092016 388.5392683443395 51.534 0.25603 51.48 51.381 51.637 -0.053871 24 12 3 0 0 0 0.80044 1 27947 27947 4.3292 1.257 1 3771000 68167 14627 45348 46366 79618 79618 0.017571554340747753 VERWRASL 8 Unmodified _VERWRASL_ 0 0 0 ENST00000219400.7_1_16:81040410-81040575:-|nuORF ENST00000219400.7_1_16:81040410-81040575:-|nuORF ENST00000219400.7_1_16:81040410-81040575:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7854614257812 2 508.785433 1015.55631 NaN NaN NaN NaN NaN NaN NaN 69.477 1 69.477 68.977 69.977 0 0 0 0 0.97444 1 38710 38710 2.8892 0 1 68168 11024 45349 46367 79619 79619 0.04915698257229906 VERYLTRQ 8 Unmodified _VERYLTRQ_ 0 0 0 REV__nc|ENSG00000251369|Q7Z398-2|ZNF550;REV__ENSG00000175787|ENST00000395395|ZNF169 REV__ENSG00000175787|ENST00000395395|ZNF169 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1065.085327148438 1 1064.58472 1063.57744 -0.37476 -0.00039897 -0.38683 -0.00041181 -0.76159 -0.00081078 1065.5864053275138 33.107 0.12045 32.948 32.888 33.008 -0.15918 5 4 2 0 0 0 8.7369 1 17267 17267 0.79363 0 1 1549100 + 68169 24505;22891 45350 46368 79620 79620 0.04819663566058807 VESETREKT 9 Unmodified _VESETREKT_ 0 0 0 REV__ENST00000417536.5_1_22:38046171-38052013:+|nuORF REV__ENST00000417536.5_1_22:38046171-38052013:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.2957763671875 2 539.772385 1077.53022 1.2036 0.00064965 0.2035 0.00010984 1.4071 0.0007595 539.7725070628395 97.64 0.60702 91.465 91.24 91.847 -6.1757 171 37 6 0 0 0 0.16785 1 64582 64582 11.64 0 1 3876699999.9999995 + 68170 18012 45351 46369 79621 79621 -0.005446604955523071 VESHDFVGCI 10 Unmodified _VESHDFVGCI_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2578125 2 553.252774 1104.491 0.050024 2.7676E-05 -0.0076436 -4.2288E-06 0.04238 2.3447E-05 553.2529665609059 55.219 0.50482 55.219 55.005 55.509 0 69 21 5 0 0 0 0.39779 1 30821 30821 21.747 9.2151 1 60556000 68171 9772 45352 46370 79622 79622 -0.057070840507776666 VESQRYYW 8 Unmodified _VESQRYYW_ 0 0 0 REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8040771484375 2 565.766906 1129.51926 0.9721 0.00054998 3.3812 0.001913 4.3533 0.0024629 565.7697617007162 49.512 0.55448 49.463 49.129 49.683 -0.048824 50 27 3 0 0 0 8.7369 1 26652 26652 23.148 6.2061 1 2777800 + 68172 27672 45353 46371 79623 79623 -0.04032018079192312 VESQRYYW 8 Unmodified _VESQRYYW_ 0 0 0 REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8040771484375 2 565.766906 1129.51926 0.62053 0.00035107 2.8198 0.0015953 3.4403 0.0019464 566.2706397066249 49.199 0.52306 49.156 48.772 49.295 -0.04369 40 25 2 0 0 0 8.7369 1 26652 26652 23.148 6.2061 1 1821700 + 68173 27672 45353 46371 79624 79624 -0.04032018079192312 VESTAVVSF 9 Unmodified _VESTAVVSF_ 0 0 0 ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6 ENST00000526524.5_1_8:145579333-145580709:-|nuORF ENST00000526524.5_1_8:145579333-145580709:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.4901733398438 1 938.482939 937.475663 -0.58066 -0.00054494 0.53392 0.00050108 -0.046742 -4.3867E-05 938.4829958772565 55.835 0.27967 55.835 55.69 55.969 0 51 24 3 0 0 0 0.30562 1 31031 31031 16.942 0 1 12680000 68174 9045 45354 46372 79625 79625 0.0044237242368581065 VESTLFRQ 8 Unmodified _VESTLFRQ_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF ENSG00000147459|ENST00000276440|DOCK5 ENSG00000147459|ENST00000276440|DOCK5 MSMS AL20221201_MKP_PDAC_01 4 490.2643432617188 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 93.652 1 87.476 86.976 87.976 -6.1757 0 0 0 0.63034 1 62001 62001 32.117 10.37 1 68175 5855 45355 46373 79626 79626 0.02332883409144415 VESYALTIHEY 11 Unmodified _VESYALTIHEY_ 0 0 0 REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF REV__ENST00000515144.5_1_5:14293150-14488426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.8179321289062 2 662.824618 1323.63468 0.64317 0.00042631 -2.0394 -0.0013518 -1.3962 -0.00092545 662.8227935627566 63.57 0.20045 57.394 57.306 57.506 -6.1757 18 10 3 0 0 0 0.48615 1 41107 41107 17.113 0 1 39043000 + 68176 17179 45356 46374 79627 79627 -0.014189587388727887 VETCEQYQSC 10 Unmodified _VETCEQYQSC_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.1546936035156 3 397.154851 1188.44272 0.080982 3.2162E-05 -0.43984 -0.00017469 -0.35886 -0.00014252 397.15449206590773 48.92 0.27427 48.876 48.753 49.027 -0.04369 24 13 2 0 0 0 0.6966 1 26410 26410 1.5923 0.57871 1 6364100 68177 4271 45357 46375 79628 79628 -0.1439594575299452 VETDGFISY 9 Unmodified _VETDGFISY_ 0 0 0 ENST00000587232.1_1_19:30104746-30106284:+|nuORF;ENSG00000105171|ENST00000585603|POP4 ENST00000587232.1_1_19:30104746-30106284:+|nuORF ENST00000587232.1_1_19:30104746-30106284:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7393188476562 2 515.740022 1029.46549 0.32145 0.00016578 -1.1213 -0.00057829 -0.79983 -0.0004125 515.73940398908 70.843 0.21144 70.366 70.248 70.459 -0.47735 17 9 2 0 0 0 0.39863 1 38735 38735 12.532 0.89125 1 1335200 68178 2281 45358 46376 79629 79629 -0.04806235301543893 VETDYRTW 8 Unmodified _VETDYRTW_ 0 0 0 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 REV__nc|ENSG00000156510|Q2TB90-2|HKDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2523193359375 2 535.251089 1068.48762 NaN NaN NaN NaN NaN NaN NaN 69.097 1 69.097 68.597 69.597 0 0 0 0 0.97348 1 38502 38502 5.7604 0 1 + 68179 21335 45359 46377 79630 79630 -0.043880108331450174 VETFLHRPL 9 Unmodified _VETFLHRPL_ 0 0 0 REV__ENST00000513421.5_1_4:54457561-54482691:-|nuORF REV__ENST00000513421.5_1_4:54457561-54482691:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.317138671875 2 556.316566 1110.61858 1.3073 0.00072725 4.2185 0.0023468 5.5257 0.0030741 556.3186366268409 87.881 0.23354 81.706 81.531 81.765 -6.1757 17 12 2 0 0 0 0.16226 1 57896 57896 26.884 2.2098 1 13960000 + 68180 28180 45360 46378 79631 79631 0.0676942460556802 VETHEYLRL 9 Unmodified _VETHEYLRL_ 0 0 0 REV__nc|ENSG00000188162|Q6ZRI0|OTOG REV__nc|ENSG00000188162|Q6ZRI0|OTOG MSMS AL20221201_MKP_PDAC_01 4 387.2080993652344 3 387.208384 1158.60332 NaN NaN NaN NaN NaN NaN NaN 44.474 1 39.622 39.122 40.122 -4.852 0 0 0 0.75456 1 27158 27158 7.609 0.88579 1 + 68181 23694 45361 46379 79632 79632 0.03036513017696052 VETIINDMDL 10 Unmodified _VETIINDMDL_ 0 0 0 REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF REV__ENST00000551916.1_1_12:62273577-62274426:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2859497070312 2 581.786647 1161.55874 0.58179 0.00033848 -2.1681 -0.0012614 -1.5863 -0.00092288 582.2867553126008 77.47 0.10855 71.294 71.237 71.346 -6.1757 9 5 2 0 0 0 0.62068 1 50686 50686 10.074 0 1 12791000 + 68182 28722 45362 46380 79633 79633 -0.015576789106489741 VETLEITQNL 10 Unmodified _VETLEITQNL_ 0 0 0 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 ENSG00000196208|ENST00000381486|GREB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.81640625 2 580.313886 1158.61322 0.84129 0.00048821 1.2938 0.00075083 2.1351 0.001239 580.8159164860422 101.49 0.1209 95.317 95.252 95.373 -6.1757 7 5 2 0 0 0 0.38092 1 68111 68111 22.736 3.4793 1 20026000 68183 9778 45363 46381 79634 79634 0.04025656232442998 VETLLKAGCDL 11 Unmodified _VETLLKAGCDL_ 0 0 0 ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8171997070312 2 581.312832 1160.61111 0.81019 0.00047097 -1.9638 -0.0011416 -1.1536 -0.00067063 581.3113424241974 100.84 0.07663 100.8 100.76 100.84 -0.04216 4 2 2 0 0 0 0.27089 1 56008 56008 17.113 3.2068 1 1507600 68184 9723 45364 46382 79635 79635 0.03722904222968282 VETNYRLYAY 10 Unmodified _VETNYRLYAY_ 0 0 0 ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4;ENST00000483318.5_1_6:30879748-30879964:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF ENST00000477288.5_1_6:30876177-30879964:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883666992188 3 431.215427 1290.62445 0.14001 6.0372E-05 0.35032 0.00015107 0.49033 0.00021144 431.21558809583536 55.03 0.18133 55.03 54.92 55.101 0 11 7 2 0 0 0 0.24005 1 30560 30560 0.77653 0 1 677670 68185 10458 45365 46383 79636 79636 -0.009235216734168716 VETPHIRA 8 Unmodified _VETPHIRA_ 0 0 0 nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ nc|ENSG00000185053|Q96LD1|SGCZ nc|ENSG00000185053|Q96LD1|SGCZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7590942382812 2 461.758884 921.503215 -0.24901 -0.00011498 0.16616 7.6726E-05 -0.082854 -3.8258E-05 461.758917007124 28.321 0.22855 28.321 28.189 28.418 0 24 11 3 0 0 0 0.63229 1 14605 14605 23.148 0 1 3876800 68186 9327 45366 46384 79637 79637 0.0393232047457559 VETPHIRA 8 Unmodified _VETPHIRA_ 0 0 0 nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ nc|ENSG00000185053|Q96LD1|SGCZ nc|ENSG00000185053|Q96LD1|SGCZ MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 461.758884 921.503215 -0.24901 -0.00011498 0.16616 7.6726E-05 -0.082854 -3.8258E-05 461.758917007124 28.321 0.22855 28.321 28.189 28.418 0 0 0 NaN 23.148 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3876800 68187 9327 45366 46384 0.0393232047457559 VETQKHPRL 9 Unmodified _VETQKHPRL_ 0 0 0 ENST00000326237.3_1_3:10044409-10044886:+|nuORF ENST00000326237.3_1_3:10044409-10044886:+|nuORF ENST00000326237.3_1_3:10044409-10044886:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2596435546875 2 554.317097 1106.61964 0.83719 0.00046407 3.1761 0.0017606 4.0133 0.0022246 554.319073220191 64.424 0.23815 63.939 63.821 64.059 -0.48512 18 10 2 0 0 0 0.16785 1 35199 35199 16.942 4.4107 1 2094800 68188 11817 45367 46385 79638 79638 0.07059638974465088 VETQLQQL 8 Unmodified _VETQLQQL_ 0 0 0 REV__ENST00000549628.1_1_12:53492723-53495948:+|nuORF REV__ENST00000549628.1_1_12:53492723-53495948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2654418945312 2 479.763832 957.513111 0.26716 0.00012817 1.0051 0.00048222 1.2723 0.00061039 479.76428117157457 63.697 0.38691 63.697 63.543 63.93 0 40 15 4 0 0 0 0.46494 1 35499 35499 38.151 0 1 6014700 + 68189 22254 45368 46386 79639 79639 0.032654636892857525 VETRFHHVA 9 Unmodified _VETRFHHVA_ 0 0 0 AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|20|2|anti-sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|20|2|anti-sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|20|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8625183105469 3 365.861319 1094.56213 NaN NaN NaN NaN NaN NaN NaN 18.339 1 18.345 17.845 18.845 0.0060463 0 0 0 0.85737 1 9291 9291 0.26902 0 1 68190 18 45369 46387 79640 79640 0.018627967689099023 VETRGFERWEQ 11 Unmodified _VETRGFERWEQ_ 0 0 0 REV__nc|ENSG00000144550|Q8IYJ1-2|CPNE9 REV__nc|ENSG00000144550|Q8IYJ1-2|CPNE9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 718.847900390625 2 718.84949 1435.68443 0.37333 0.00026837 -1.4517 -0.0010435 -1.0784 -0.00077517 718.8489129023665 36.35 0.17984 36.35 36.269 36.448 0 14 8 2 0 0 0 0.59689 1 19299 19299 11.495 1.9507 1 2989100 + 68191 20714 45370 46388 79641 79641 -0.01598831010187496 VETSWTSFHF 10 Unmodified _VETSWTSFHF_ 0 0 0 REV__ENST00000445067.6_1_1:111743519-111743642:+|nuORF REV__ENST00000445067.6_1_1:111743519-111743642:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.9027404785156 3 414.192623 1239.55604 0.20514 8.4966E-05 -0.21463 -8.8899E-05 -0.0094951 -3.9328E-06 414.19250025215655 48.375 0.095177 48.331 48.3 48.395 -0.04369 5 4 2 0 0 0 0.23896 1 26113 26113 1.7423 0 1 1084700 + 68192 27129 45371 46389 79642 79642 -0.05415766253304355 VETVALLLS 9 Unmodified _VETVALLLS_ 0 0 0 REV__ENSG00000184916|ENST00000331782|JAG2 REV__ENSG00000184916|ENST00000331782|JAG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7875061035156 2 472.786776 943.558998 0.93784 0.0004434 -0.30974 -0.00014644 0.6281 0.00029696 472.78662664860155 91.534 0.81664 85.358 84.956 85.773 -6.1757 90 45 3 0 0 0 0.042911 1 60652 60652 48.346 0 1 15129000 + 68193 23451 45372 46390 79643 79643 0.08496108871520391 VETVLYFCGEF 11 Unmodified _VETVLYFCGEF_ 0 0 0 ENST00000371419.6_1_20:52824416-52824554:+|nuORF ENST00000371419.6_1_20:52824416-52824554:+|nuORF ENST00000371419.6_1_20:52824416-52824554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.3059692382812 2 653.804839 1305.59513 0.68082 0.00044513 1.2155 0.00079468 1.8963 0.0012398 654.3072161140724 50.762 0.46551 50.349 50.092 50.557 -0.41351 77 22 5 0 0 0 0.63851 1 27254 27254 9.3831 1.2276 1 7753400 68194 12358 45373 46391 79644 79644 -0.04544802013924709 VETVWFYFF 9 Unmodified _VETVWFYFF_ 0 0 0 REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.3015747070312 2 619.30005 1236.58555 0.4651 0.00028804 -0.49736 -0.00030801 -0.032252 -1.9973E-05 619.2998976652227 93.243 0.53908 92.786 92.728 93.267 -0.45741 33 23 2 0 0 0 0.54444 1 50987 50987 4.756 0 1 199160 + 68195 25126 45374 46392 79645 79645 -0.023282022371631683 VETVWFYFF 9 Unmodified _VETVWFYFF_ 0 0 0 REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2971801757812 2 619.30005 1236.58555 NaN NaN NaN NaN NaN NaN NaN 94.285 1 93.865 93.365 94.365 -0.42044 0 0 0 0.85798 1 51515 51515 0.52476 0.066424 1 + 68196 25126 45374 46392 79646 79646 -0.023282022371631683 VETVWFYFF 9 Unmodified _VETVWFYFF_ 0 0 0 REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF REV__ENST00000269445.10_1_18:46570317-46570428:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.3002319335938 2 619.30005 1236.58555 NaN NaN NaN NaN NaN NaN NaN 94.479 1 94.058 93.558 94.558 -0.42044 0 0 0 0.84564 1 51617 51617 2.0598 0 1 + 68197 25126 45374 46392 79647 79647 -0.023282022371631683 VEVGALLGSY 10 Unmodified _VEVGALLGSY_ 0 0 0 REV__ENSG00000164081|ENST00000341333|TEX264 REV__ENSG00000164081|ENST00000341333|TEX264 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2796936035156 2 504.274032 1006.53351 -1.0942 -0.00055176 2.8991 0.001462 1.805 0.00091019 504.2742610401516 56.172 0.57095 55.687 55.352 55.923 -0.48554 38 28 2 0 0 0 0.35903 1 30513 30513 24.021 0 1 6696400 + 68198 21864 45375 46393 79648 79648 0.0305063434910835 VEVLEPAP 8 Unmodified _VEVLEPAP_ 0 0 0 REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.4667358398438 1 853.466561 852.459284 0.045912 3.9184E-05 0.12805 0.00010929 0.17396 0.00014847 853.4665298199778 80.023 0.47746 80.023 79.797 80.275 0 62 24 3 0 0 0 0.46494 1 44360 44360 38.151 0 1 9222800 + 68199 17595 45376 46394 79649 79649 0.02715291257561603 VEVLEPAP 8 Unmodified _VEVLEPAP_ 0 0 0 REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 853.4679565429688 1 853.466561 852.459284 0.33368 0.00028479 1.0106 0.00086251 1.3443 0.0011473 853.4672977046442 80.621 0.32204 80.128 79.929 80.251 -0.49248 18 12 2 0 0 0 0.63229 1 44117 44117 23.148 0 1 835060 + 68200 17595 45376 46394 79650 79650 0.02715291257561603 VEVLEPAP 8 Unmodified _VEVLEPAP_ 0 0 0 REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF REV__ENST00000525586.5_1_11:119185190-119185971:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.4684448242188 1 853.466561 852.459284 0.97249 0.00082998 0.75903 0.00064781 1.7315 0.0014778 853.4670971502145 88.991 0.50768 82.815 82.551 83.058 -6.1757 51 28 2 0 0 0 0.18881 1 58843 58843 74.396 3.6808 1 25390000 + 68201 17595 45376 46394 79651 79651 0.02715291257561603 VEVLRSTH 8 Unmodified _VEVLRSTH_ 0 0 0 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7637023925781 2 470.764166 939.513779 -0.48023 -0.00022607 0.079609 3.7477E-05 -0.40062 -0.0001886 470.7639876592564 28.323 0.24898 28.323 28.189 28.438 0 28 13 3 0 0 0 0.30525 1 14624 14624 54.774 10.367 1 8380800 + 68202 23329 45377 46395 79652 79652 0.04160303128992382 VEVLRSTH 8 Unmodified _VEVLRSTH_ 0 0 0 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2246398925781 2 470.764166 939.513779 -0.48023 -0.00022607 0.079609 3.7477E-05 -0.40062 -0.0001886 470.7639876592564 28.323 0.24898 28.323 28.189 28.438 0 28 13 3 0 0 0 8.7369 1 14657 14657 26.884 6.43 1 8380800 + 68203 23329 45377 46395 79653 79653 0.04160303128992382 VEVLRSTH 8 Unmodified _VEVLRSTH_ 0 0 0 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 REV__nc|ENSG00000183230|Q9UI47-2|CTNNA3 MSMS AL20221201_MKP_PDAC_01 4 470.7649230957031 2 470.764166 939.513779 NaN NaN NaN NaN NaN NaN NaN 30.983 1 27.486 26.986 27.986 -3.497 0 0 0 0.29029 1 17517 17517 64.236 15.89 1 + 68204 23329 45377 46395 79654 79654 0.04160303128992382 VEVPEPAA 8 Unmodified _VEVPEPAA_ 0 0 0 ENST00000545398.5_1_X:100306891-100307056:-|nuORF ENST00000545398.5_1_X:100306891-100307056:-|nuORF ENST00000545398.5_1_X:100306891-100307056:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.4213256835938 1 811.41961 810.412334 0.64452 0.00052297 -0.54434 -0.00044169 0.10017 8.1282E-05 811.4194342103862 54.352 0.37315 54.352 54.132 54.505 0 25 16 2 0 0 0 0.35156 1 30117 30117 49.669 6.7009 1 2021200 68205 15091 45378 46396 79655 79655 -0.0004556829356943126 VEVVPSGS 8 Unmodified _VEVVPSGS_ 0 0 0 REV__ENST00000534574.5_1_11:117857127-117857442:+|nuORF REV__ENST00000534574.5_1_11:117857127-117857442:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2072448730469 2 387.205618 772.396684 0.081224 3.145E-05 2.7134 0.0010506 2.7946 0.0010821 387.2065210053488 34.181 0.33247 34.21 34.036 34.369 0.028934 23 15 2 0 0 0 0.80722 1 18016 18016 2.3027 0 1 2217800 + 68206 28502 45379 46397 79656 79656 0.0013814518939625486 VEWHSSCGTL 10 Unmodified _VEWHSSCGTL_ 0 0 0 REV__ENSG00000169174|ENST00000302118|PCSK9 REV__ENSG00000169174|ENST00000302118|PCSK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7489624023438 2 559.750398 1117.48624 0.38495 0.00021548 -1.1159 -0.00062464 -0.73097 -0.00040916 559.7499401880771 84.239 0.39876 84.239 84.044 84.443 0 49 20 3 0 0 0 0.66569 1 46648 46648 6.7232 0.96273 1 1683300 + 68207 22381 45380 46398 79657 79657 -0.06779968193541208 VEWIVAES 8 Unmodified _VEWIVAES_ 0 0 0 REV__nc|ENSG00000067445|Q12816-2|TRO;REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2 REV__nc|ENSG00000067445|Q12816-2|TRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7396545410156 2 466.739825 931.465098 0.078957 3.6852E-05 -0.20781 -9.6995E-05 -0.12886 -6.0142E-05 466.73991422239783 78.836 0.18135 78.35 78.213 78.394 -0.48596 9 6 2 0 0 0 0.79669 1 43181 43181 8.5933 0 1 521870 + 68208 17421;18234 45381 46399 79658 79658 -0.0033761023076976926 VEWLTYKLIEA 11 Unmodified _VEWLTYKLIEA_ 0 0 0 REV__ENSG00000183671|ENST00000621141|CMKLR2 REV__ENSG00000183671|ENST00000621141|CMKLR2 MSMS AL20221201_MKP_PDAC_01 4 455.5895080566406 3 455.586861 1363.73875 NaN NaN NaN NaN NaN NaN NaN 75.143 1 68.968 68.468 69.468 -6.1757 0 0 0 0.86919 1 49135 49135 8.7518 2.1283 1 + 68209 23364 45382 46400 79659 79659 0.0714336808864573 VEWSLYEVFH 10 Unmodified _VEWSLYEVFH_ 0 0 0 REV__nc|ENSG00000101605|P52179-2|MYOM1 REV__nc|ENSG00000101605|P52179-2|MYOM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8800964355469 3 436.880156 1307.61864 0.22992 0.00010045 -0.061113 -2.6699E-05 0.16881 7.375E-05 436.87964748575456 91.198 0.39937 91.198 91.059 91.458 0 39 23 2 0 0 0 0.72464 1 50499 50499 0.15932 0 1 721970 + 68210 18187 45383 46401 79660 79660 -0.022866201851002188 VEWYIEMKL 9 Unmodified _VEWYIEMKL_ 0 0 0 ENST00000476367.5_1_3:156867074-156874849:-|nuORF;ENST00000479596.5_1_3:156869964-156874849:-|nuORF;ENST00000475298.5_1_3:156869697-156874849:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF ENST00000476367.5_1_3:156867074-156874849:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.81005859375 2 605.812467 1209.61038 -0.13657 -8.2734E-05 -2.6843 -0.0016262 -2.8209 -0.0017089 605.8102992925842 78.199 0.26166 78.199 78.03 78.291 0 24 10 3 0 0 0 0.32871 1 43434 43434 15.847 1.9411 1 968870 68211 13980 45384 46402 79661 79661 0.01396109573920512 VEYCEPCGFEA 11 Unmodified _VEYCEPCGFEA_ 0 0 0 ENSG00000141741|ENST00000394231|MIEN1 ENSG00000141741|ENST00000394231|MIEN1 ENSG00000141741|ENST00000394231|MIEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.1632690429688 3 416.163347 1245.46821 0.27867 0.00011597 -0.19568 -8.1435E-05 0.08299 3.4537E-05 416.16323541789046 57.643 0.47207 57.643 57.419 57.891 0 56 22 3 0 0 0 0.71341 1 32132 32132 1.2148 0 1 14847000 68212 5371 45385 46403 79662 79662 -0.14470471230561088 VEYELFKME 9 Unmodified _VEYELFKME_ 0 0 0 ENSG00000198768|ENST00000371149|APCDD1L ENSG00000198768|ENST00000371149|APCDD1L ENSG00000198768|ENST00000371149|APCDD1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2855834960938 2 594.286282 1186.55801 0.2461 0.00014625 -1.6924 -0.0010058 -1.4463 -0.0008595 594.2851445051919 67.513 0.23785 67.513 67.366 67.604 0 17 10 2 0 0 0 0.2546 1 37618 37618 19.362 0.10495 1 1491500 68213 10147 45386 46404 79663 79663 -0.027804735596873797 VEYGMTWQL 9 Unmodified _VEYGMTWQL_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.3184814453125 2 563.765517 1125.51648 0.86055 0.00048515 4.3545 0.0024549 5.215 0.0029401 563.7674183923409 100.57 0.1012 94.397 94.33 94.431 -6.1757 12 6 2 0 0 0 0.16785 1 67220 67220 16.942 0.79319 1 35673000 + 68214 21238 45387 46405 79664 79664 -0.041256095283642935 VEYHGPLF 8 Unmodified _VEYHGPLF_ 0 0 0 REV__nc|ENSG00000070669|P08243-2|ASNS REV__nc|ENSG00000070669|P08243-2|ASNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2437133789062 2 481.242535 960.470518 0.75314 0.00036244 0.23148 0.0001114 0.98462 0.00047384 481.2428370911529 72.73 0.24001 72.254 72.146 72.386 -0.47588 15 10 2 0 0 0 0.71616 1 39780 39780 15.768 4.1279 1 741540 + 68215 17476 45388 46406 79665 79665 -0.011298866482889025 VEYKHKPYDNM 11 Unmodified _VEYKHKPYDNM_ 0 0 0 REV__nc|ENSG00000226098|P0C7V7|SEC11B REV__nc|ENSG00000226098|P0C7V7|SEC11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 712.3360595703125 2 712.337369 1422.66019 -1.3383 -0.00095335 1.9357 0.0013789 0.59735 0.00042551 712.3389139845583 32.523 0.15629 32.523 32.462 32.618 0 25 9 3 0 0 0 0.44182 1 16978 16978 19.362 4.1135 1 10849000 + 68216 29951 45389 46407 79666 79666 -0.03423807488070452 VEYLREQEVSE 11 Unmodified _VEYLREQEVSE_ 0 0 0 ENSG00000185278|ENST00000367701|ZBTB37 ENSG00000185278|ENST00000367701|ZBTB37 ENSG00000185278|ENST00000367701|ZBTB37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8355102539062 2 690.835714 1379.65687 -0.63887 -0.00044136 0.74616 0.00051547 0.10729 7.4118E-05 690.8360925388205 34.909 0.1705 34.909 34.846 35.016 0 15 8 2 0 0 0 0.5229 1 18442 18442 15.248 3.0078 1 3845300 68217 9357 45390 46408 79667 79667 -0.017767790611060263 VEYRPVVAEL 10 Unmodified _VEYRPVVAEL_ 0 0 0 ENSG00000105376|ENST00000221980|ICAM5 ENSG00000105376|ENST00000221980|ICAM5 ENSG00000105376|ENST00000221980|ICAM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.2201232910156 3 392.220401 1173.63937 0.70769 0.00027757 -0.083601 -3.279E-05 0.62409 0.00024478 392.2201590003192 42.605 0.26859 42.605 42.468 42.737 0 32 13 3 0 0 0 0.68844 1 23053 23053 4.1895 0 1 8001600 68218 2312 45391 46409 79668 79668 0.05949970194569687 VEYRPVVAEL 10 Unmodified _VEYRPVVAEL_ 0 0 0 ENSG00000105376|ENST00000221980|ICAM5 ENSG00000105376|ENST00000221980|ICAM5 ENSG00000105376|ENST00000221980|ICAM5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.220401 1173.63937 0.70769 0.00027757 -0.083601 -3.279E-05 0.62409 0.00024478 392.2201590003192 42.605 0.26859 42.605 42.468 42.737 0 0 0 NaN 4.1895 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 8001600 68219 2312 45391 46409 0.05949970194569687 VEYWLPKL 8 Unmodified _VEYWLPKL_ 0 0 0 nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6742889-6743111:-|nuORF nc|ENSG00000254838|Q7Z2Y8|GVINP1 nc|ENSG00000254838|Q7Z2Y8|GVINP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1047.586181640625 1 1047.58734 1046.58007 -0.96659 -0.0010126 -0.19724 -0.00020662 -1.1638 -0.0012192 1047.5878893600864 29.597 0.14979 29.597 29.572 29.722 0 10 8 2 0 0 0 0.80992 1 15344 15344 0.69038 0 1 2403900 68220 16586 45392 46410 79669 79669 0.05864118971044263 VFADVAFVKI 10 Unmodified _VFADVAFVKI_ 0 0 0 nc|ENSG00000144115|Q86YJ6-4|THNSL2 nc|ENSG00000144115|Q86YJ6-4|THNSL2 nc|ENSG00000144115|Q86YJ6-4|THNSL2 MSMS AL20221201_MKP_PDAC_01 4 369.8845520019531 3 370.21822 1107.63283 NaN NaN NaN NaN NaN NaN NaN 23.181 1 20.402 19.902 20.902 -2.7784 0 0 0 0.66657 1 12528 12528 11.518 1.3673 1 68221 16247 45393 46411 79670 79670 0.0833207703383323 VFAFDERVFL 10 Unmodified _VFAFDERVFL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8276977539062 2 621.829506 1241.64446 -0.28874 -0.00017955 -2.9118 -0.0018106 -3.2005 -0.0019902 622.3291410595612 60.993 0.22191 60.504 60.395 60.617 -0.48932 15 10 2 0 0 0 0.18021 1 33214 33214 36.127 7.6402 1 8637300 68222 8251 45394 46412 79671 79671 0.033302740571798495 VFAFDERVFL 10 Unmodified _VFAFDERVFL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 621.829506 1241.64446 0.67305 0.00041852 -1.8964 -0.0011793 -1.2234 -0.00076074 621.8274175473493 60.581 0.22144 60.581 60.474 60.695 0 0.14523 0.00091289 NaN 36.127 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 451790 68223 8251 45394 46412 0.033302740571798495 VFAFDERVFL 10 Unmodified _VFAFDERVFL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.829506 1241.64446 -0.28874 -0.00017955 -2.9118 -0.0018106 -3.2005 -0.0019902 622.3291410595612 60.993 0.22191 60.504 60.395 60.617 -0.48932 0.068718 -0.00034986 NaN 36.127 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 8637300 68224 8251 45394 46412 0.033302740571798495 VFAFDERVFL 10 Unmodified _VFAFDERVFL_ 0 0 0 nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 nc|ENSG00000172752|A8TX70-2|COL6A5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 621.829506 1241.64446 0.39342 0.00024464 -2.8541 -0.0017748 -2.4607 -0.0015301 621.8273476171508 66.397 0.28868 60.221 60.079 60.368 -6.1757 -0.21395 -0.00027816 NaN 36.127 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 16507000 68225 8251 45394 46412 0.033302740571798495 VFAFHHANF 9 Unmodified _VFAFHHANF_ 0 0 0 ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENST00000432525.5_1_22:38886367-38903636:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8467712402344 3 363.847009 1088.5192 0.52035 0.00018933 -0.20723 -7.54E-05 0.31312 0.00011393 363.8468750923455 42.993 0.21909 42.977 42.823 43.042 -0.015671 22 9 3 0 0 0 0.07087 1 23023 23023 39.95 19.535 1 9739700 68226 1767 45395 46413 79672 79672 -0.021519732885280973 VFAFHHANF 9 Unmodified _VFAFHHANF_ 0 0 0 ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENST00000432525.5_1_22:38886367-38903636:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2676391601562 2 545.266876 1088.5192 NaN NaN NaN NaN NaN NaN NaN 43.02 1 43.004 42.504 43.504 -0.015667 0 0 0 0.27852 1 23049 23049 28.487 12.64 1 68227 1767 45395 46413 79673 79673 -0.021519732885280973 VFAFHHANF 9 Unmodified _VFAFHHANF_ 0 0 0 ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENST00000432525.5_1_22:38886367-38903636:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8482360839844 3 363.847009 1088.5192 2.1925 0.00079774 1.2056 0.00043865 3.3981 0.0012364 363.8474306088923 47.513 0.37867 42.279 42.104 42.482 -5.2339 38 21 2 0 0 0 0.30202 1 29535 29535 17.113 8.9574 1 14759000 68228 1767 45395 46413 79674 79674 -0.021519732885280973 VFAHPRKLLM 10 Unmodified _VFAHPRKLLM_ 0 0 0 ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000183305|ENST00000682532|MAGEA2B ENSG00000268606|ENST00000684311|MAGEA2 ENSG00000268606|ENST00000684311|MAGEA2 MSMS AL20221201_MKP_PDAC_01 4 404.5740051269531 3 404.574233 1210.70087 NaN NaN NaN NaN NaN NaN NaN 43.281 1 38.516 38.016 39.016 -4.7648 0 0 0 0.94014 1 26270 26270 3.3196 0 1 68229 9132 45396 46414 79675 79675 0.10394623412867077 VFAHTDNMVF 10 Unmodified _VFAHTDNMVF_ 0 0 0 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.7766723632812 2 590.776416 1179.53828 0.36233 0.00021405 -0.063999 -3.7809E-05 0.29833 0.00017624 590.7764107609736 55.287 0.19157 54.809 54.691 54.883 -0.47798 14 8 2 0 0 0 0.35903 1 29982 29982 24.021 10.115 1 1857800 68230 8865 45397 46415 79676 79676 -0.04430804779826758 VFAHTDNMVF 10 Unmodified _VFAHTDNMVF_ 0 0 0 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7782592773438 2 590.776416 1179.53828 0.93193 0.00055056 0.4619 0.00027288 1.3938 0.00082344 590.7767827113277 61.322 0.29744 55.174 54.978 55.275 -6.1478 29 14 3 0 0 0 0.01132 1 39439 39439 85.272 45.315 1 36401000 68231 8865 45397 46415 79677 79677 -0.04430804779826758 VFAHTDNMVF 10 Oxidation (M) _VFAHTDNM(Oxidation (M))VF_ VFAHTDNM(1)VF VFAHTDNM(96)VF 0 0 1 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7740478515625 2 598.773874 1195.53319 NaN NaN NaN NaN NaN NaN NaN 44.236 1 43.92 43.42 44.42 -0.31585 0 0 0 0.018357 1 23589 23589 96.285 65.016 1 68232 8865 45397 46416 79678 79678 1494 -0.05675108642435589 VFAHTDNMVF 10 Oxidation (M) _VFAHTDNM(Oxidation (M))VF_ VFAHTDNM(1)VF VFAHTDNM(100)VF 0 0 1 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 ENSG00000179913|ENST00000318683|B3GNT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.7745971679688 2 598.773874 1195.53319 0.26887 0.000161 -1.4379 -0.00086097 -1.169 -0.00069997 598.7741613918707 49.782 0.45193 44.243 44.079 44.531 -5.5391 101 28 5 0 0 0 0.0045909 2 31215 31074;31215 99.799 63.672 1 71482000 68233 8865 45397 46416 79679;79680 79680 1494 -0.05675108642435589 VFAKILIQF 9 Unmodified _VFAKILIQF_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8369750976562 2 539.836603 1077.65865 0.20484 0.00011058 0.48003 0.00025914 0.68488 0.00036972 539.8367744968124 98.737 0.080994 92.561 92.508 92.589 -6.1757 9 5 2 0 0 0 0.042911 1 65539 65539 48.346 19.859 1 34407000 68234 3566 45398 46417 79681 79681 0.12292971276133358 VFALHVIFL 9 Unmodified _VFALHVIFL_ 0 0 0 REV__ENST00000336755.9_1_9:37357280-37357349:+|nuORF REV__ENST00000336755.9_1_9:37357280-37357349:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8242797851562 2 529.823495 1057.63244 1.4583 0.00077262 -0.57262 -0.00030339 0.88564 0.00046924 529.8233148463543 101 0.089531 94.823 94.78 94.869 -6.1757 7 4 2 0 0 0 0.1773 1 67693 67693 36.466 0 1 35337000 + 68235 25650 45399 46418 79682 79682 0.10592702104645468 VFARQWSVLL 10 Unmodified _VFARQWSVLL_ 0 0 0 REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF REV__ENST00000454762.1_1_6:43472456-43473590:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.9037780761719 3 406.904636 1217.69208 0.52528 0.00021374 -3.0643 -0.0012469 -2.539 -0.0010331 406.9034946255398 47.397 0.17682 47.359 47.258 47.435 -0.038647 12 7 2 0 0 0 0.66229 1 25557 25557 7.1017 0.064636 1 1056400 + 68236 20224 45400 46419 79683 79683 0.09193973048058979 VFASILAAF 9 Unmodified _VFASILAAF_ 0 0 0 nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2 nc|ENSG00000004455|P54819-6|AK2 nc|ENSG00000004455|P54819-6|AK2 MSMS AL20221201_MKP_PDAC_01 4 469.7710876464844 2 469.770929 937.527304 NaN NaN NaN NaN NaN NaN NaN 101.39 1 95.212 94.712 95.712 -6.1757 0 0 0 0.052454 1 68020 68020 56.541 33.393 1 68237 274 45401 46420 79684 79684 0.05604160908239919 VFCGMLMNY 9 Unmodified _VFCGMLMNY_ 0 0 0 nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1;ENST00000503745.1_1_4:99273670-99308609:+|nuORF;ENST00000511379.5_1_4:99182716-99300325:+|nuORF;ENST00000505378.5_1_4:99182716-99313239:+|nuORF;ENST00000507303.5_1_4:99182716-99313239:+|nuORF nc|ENSG00000138698|P52306-4|RAP1GDS1 nc|ENSG00000138698|P52306-4|RAP1GDS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8244323730469 3 359.82372 1076.44933 0.94167 0.00033883 0.25289 9.0996E-05 1.1946 0.00042983 359.82407793758813 24.569 0.32693 21.685 21.49 21.817 -2.8831 38 17 3 0 0 0 0.41742 1 13331 13331 7.609 0.50723 1 4924400 68238 5090 45402 46421 79685 79685 -0.0858367933531099 VFCLLNVMFVL 11 Unmodified _VFCLLNVMFVL_ 0 0 0 ENST00000508935.1_1_5:102509572-102509677:+|nuORF ENST00000508935.1_1_5:102509572-102509677:+|nuORF ENST00000508935.1_1_5:102509572-102509677:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.8553466796875 2 649.355988 1296.69742 -0.029463 -1.9132E-05 -1.0399 -0.00067524 -1.0693 -0.00069437 649.3553159774374 85.13 0.24509 85.13 85.05 85.295 0 31 12 3 0 0 0 0.71618 1 47164 47164 2.7352 0 1 1339600 68239 14571 45403 46422 79686 79686 0.060941925239603734 VFCPPLKFEF 10 Carbamidomethyl (C) _VFC(Carbamidomethyl (C))PPLKFEF_ VFC(1)PPLKFEF VFC(62)PPLKFEF 0 1 0 nc|ENSG00000196220|O43295-2|SRGAP3;ENSG00000196220|ENST00000383836|SRGAP3;ENST00000485983.6_1_3:9079745-9122942:-|nuORF;nc|ENSG00000196220|O43295-3|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 nc|ENSG00000196220|O43295-2|SRGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3267822265625 2 642.328285 1282.64202 1.3343 0.00085706 1.5933 0.0010234 2.9276 0.0018805 642.3290128300691 98.232 0.12009 92.056 91.952 92.072 -6.1757 12 7 2 0 0 0 0.043225 1 65137 65137 61.602 29.485 1 13341000 68240 9780 45404 46423 79687 79687 895 0.012001023278799039 VFCPPMKFEF 10 Carbamidomethyl (C) _VFC(Carbamidomethyl (C))PPMKFEF_ VFC(1)PPMKFEF VFC(58)PPMKFEF 0 1 0 ENSG00000171943|ENST00000367123|SRGAP2C;nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;ENSG00000266028|ENST00000573034|SRGAP2;ENST00000483628.1_1:206566231-206579954:+|nuORF ENSG00000171943|ENST00000367123|SRGAP2C ENSG00000171943|ENST00000367123|SRGAP2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.3045043945312 2 651.306495 1300.59844 1.2097 0.00078786 -1.8281 -0.0011906 -0.61843 -0.00040278 651.3048883622995 94.434 0.56215 88.258 87.947 88.509 -6.1757 86 32 4 0 0 0 0.051223 2 62435 62435;62554 57.722 27.881 1 26586000 68241 8163 45405 46424 79688;79689 79688 785 -0.03983830440938618 VFCRFYYF 8 Unmodified _VFCRFYYF_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.7613525390625 2 572.767863 1143.52117 NaN NaN NaN NaN NaN NaN NaN 68.791 1 68.791 68.291 69.291 0 0 0 0 0.97444 1 38338 38338 2.8892 0.82947 1 68242 8170 45406 46425 79690 79690 -0.04484680594941892 VFCSGARF 8 Unmodified _VFCSGARF_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7156982421875 2 443.71563 885.416708 -0.17471 -7.752E-05 -1.4115 -0.00062631 -1.5862 -0.00070383 443.7151598496462 29.518 0.29187 29.518 29.37 29.662 0 68 18 4 0 0 0 0.66338 1 15256 15256 20.454 2.3186 1 213590000 + 68243 23945 45407 46426 79691 79691 -0.03058382351639466 VFCSGARF 8 Unmodified _VFCSGARF_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.71533203125 2 443.71563 885.416708 0.33343 0.00014795 -1.1246 -0.00049902 -0.79121 -0.00035107 443.71516966209435 29.571 0.74477 29.601 29.488 30.233 0.030106 55 31 4 0 0 0 0.76266 1 15477 15477 11.64 11.64 1 98999000 + 68244 23945 45407 46426 79692 79692 -0.03058382351639466 VFCYNHMNE 9 Unmodified _VFCYNHMNE_ 0 0 0 REV__ENST00000460786.1_1_2:9048503-9098759:-|nuORF REV__ENST00000460786.1_1_2:9048503-9098759:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1557006835938 3 386.156526 1155.44775 0.28862 0.00011145 -1.3998 -0.00054055 -1.1112 -0.0004291 386.15610776717284 59.7 0.45882 59.7 59.443 59.902 0 56 20 4 0 0 0 0.56345 1 33171 33171 2.086 0 1 12877000 + 68245 20670 45408 46427 79693 79693 -0.1237559709973084 VFDAFLNMM 9 2 Oxidation (M) _VFDAFLNM(Oxidation (M))M(Oxidation (M))_ VFDAFLNM(1)M(1) VFDAFLNM(71)M(71) 0 0 2 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2472534179688 2 560.246103 1118.47765 1.4246 0.00079812 -0.038979 -2.1838E-05 1.3856 0.00077628 560.246088032757 66.321 0.52821 66.33 66.012 66.54 0.0095596 58 26 3 0 0 0 0.013323 2 36286 36286;36400 71.134 52.987 1 8313500 68246 10689 45409 46428 79694;79695 79694 1711;1712 -0.07684658154380486 VFDAFLNMM 9 2 Oxidation (M) _VFDAFLNM(Oxidation (M))M(Oxidation (M))_ 0 0 2 ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.246103 1118.47765 0.42765 0.00023959 0.71241 0.00039912 1.1401 0.00063871 560.2467845522997 66.734 0.51628 66.251 65.964 66.481 -0.48323 -0.039722 0.0004497 NaN 71.134 42 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2354200 68247 10689 45409 46428 1711;1712 -0.07684658154380486 VFDAGYLEF 9 Unmodified _VFDAGYLEF_ 0 0 0 REV__ENSG00000138892|ENST00000433387|TTLL8 REV__ENSG00000138892|ENST00000433387|TTLL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7528076171875 2 530.752933 1059.49131 0.42721 0.00022675 -0.44952 -0.00023858 -0.022303 -1.1837E-05 530.7521960455939 75.413 0.29695 75.413 75.226 75.523 0 15 12 2 0 0 0 0.49272 1 41995 41995 7.9102 2.1497 1 941130 + 68248 20380 45410 46429 79696 79696 -0.03605341059278544 VFDAGYLEF 9 Unmodified _VFDAGYLEF_ 0 0 0 REV__ENSG00000138892|ENST00000433387|TTLL8 REV__ENSG00000138892|ENST00000433387|TTLL8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2404174804688 2 530.752933 1059.49131 0.42721 0.00022675 -0.44952 -0.00023858 -0.022303 -1.1837E-05 530.7521960455939 75.413 0.29695 75.413 75.226 75.523 0 15 12 2 0 0 0 0.16785 1 41967 41967 23.148 2.2772 1 941130 + 68249 20380 45410 46429 79697 79697 -0.03605341059278544 VFDAGYLEF 9 Unmodified _VFDAGYLEF_ 0 0 0 REV__ENSG00000138892|ENST00000433387|TTLL8 REV__ENSG00000138892|ENST00000433387|TTLL8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.5819702148438 2 530.752933 1059.49131 NaN NaN NaN NaN NaN NaN NaN 75.814 1 75.337 74.837 75.837 -0.47714 0 0 0 0.46757 1 41503 41503 16.942 2.3606 1 + 68250 20380 45410 46429 79698 79698 -0.03605341059278544 VFDASSIQY 9 Unmodified _VFDASSIQY_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.2490234375 2 515.248015 1028.48148 NaN NaN NaN NaN NaN NaN NaN 62.109 1 55.933 55.433 56.433 -6.1757 0 0 0 0.15618 1 40053 40053 36.044 14.298 1 68251 4995 45411 46430 79699 79699 -0.03162529064638875 VFDASSIQYF 10 Unmodified _VFDASSIQYF_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2827758789062 2 588.782222 1175.54989 0.01117 6.5769E-06 -1.0753 -0.00063314 -1.0642 -0.00062657 588.7817312707645 76.512 0.51125 76.032 75.684 76.195 -0.47945 44 29 2 0 0 0 0.50944 1 41934 41934 15.847 6.4997 1 4408500 68252 4995 45412 46431 79700 79700 -0.030862844848115856 VFDASSIQYF 10 Unmodified _VFDASSIQYF_ 0 0 0 ENST00000495254.5_1_1:79119932-79128426:+|nuORF;ENSG00000137965|ENST00000370747|IFI44;ENST00000485662.1_1_1:79125005-79128426:+|nuORF;nc|ENSG00000137965|Q8TCB0-2|IFI44 ENST00000495254.5_1_1:79119932-79128426:+|nuORF ENST00000495254.5_1_1:79119932-79128426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.7825927734375 2 588.782222 1175.54989 0.27221 0.00016027 0.13044 7.6798E-05 0.40265 0.00023707 588.7824738047528 76.04 0.21357 76.088 75.946 76.16 0.047951 15 8 2 0 0 0 0.33553 1 41953 41953 25.399 16.052 1 2406800 68253 4995 45412 46431 79701 79701 -0.030862844848115856 VFDAVVEAV 9 Unmodified _VFDAVVEAV_ 0 0 0 nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;ENST00000491838.5_1_21:42598231-42618026:+|nuORF;ENST00000463674.5_1_21:42613685-42647548:+|nuORF nc|ENSG00000182240|Q9Y5Z0-2|BACE2 nc|ENSG00000182240|Q9Y5Z0-2|BACE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7554626464844 2 474.755475 947.496398 0.2769 0.00013146 -0.59892 -0.00028434 -0.32202 -0.00015288 474.75536465691283 65.921 0.22049 65.921 65.81 66.03 0 18 11 2 0 0 0 0.14602 1 36746 36746 28.487 10.352 1 1368000 68254 9034 45413 46432 79702 79702 0.020549628033336376 VFDCMELVM 9 Carbamidomethyl (C) _VFDC(Carbamidomethyl (C))MELVM_ VFDC(1)MELVM VFDC(51)MELVM 0 1 0 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1;nc|ENSG00000149636|Q9H410-3|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2494506835938 2 572.247788 1142.48102 1.3983 0.00080019 -0.73771 -0.00042216 0.66062 0.00037804 572.247759182196 95.488 0.55644 89.313 89.104 89.66 -6.1757 75 33 3 0 0 0 0.038285 2 63322 63192;63322 50.855 33.913 1 33870000 68255 6028 45414 46433 79703;79704 79704 601 -0.08451731372019822 VFDCMELVM 9 Carbamidomethyl (C),Oxidation (M) _VFDC(Carbamidomethyl (C))MELVM(Oxidation (M))_ VFDC(1)MELVM VFDCM(0.001)ELVM(0.999) VFDC(42)MELVM VFDCM(-30)ELVM(30) 0 1 1 nc|ENSG00000149636|Q9H410-2|DSN1;nc|ENSG00000149636|Q9H410-4|DSN1;ENSG00000149636|ENST00000373750|DSN1;nc|ENSG00000149636|Q9H410-3|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 nc|ENSG00000149636|Q9H410-2|DSN1 MSMS AL20221201_MKP_PDAC_01 4 580.2464599609375 2 580.245246 1158.47594 NaN NaN NaN NaN NaN NaN NaN 73.864 1 67.688 67.188 68.188 -6.1757 0 0 0 0.10545 1 48295 48295 42.095 31.271 2 68256 6028 45414 46434 79705 79705 601 1075 -0.09696035234628653 VFDDLESKM 9 Oxidation (M) _VFDDLESKM(Oxidation (M))_ VFDDLESKM(1) VFDDLESKM(40) 0 0 1 ENSG00000197798|ENST00000533050|FAM118B ENSG00000197798|ENST00000533050|FAM118B ENSG00000197798|ENST00000533050|FAM118B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2516479492188 2 550.25244 1098.49033 -0.13715 -7.547E-05 -2.7291 -0.0015017 -2.8662 -0.0015771 550.7521921533362 33.388 0.19067 33.388 33.243 33.434 0 14 9 2 0 0 0 0.069655 1 17506 17506 40.239 22.093 1 3166900 68257 10005 45415 46435 79706 79706 1624 -0.054979234905204066 VFDDTLGSF 9 Unmodified _VFDDTLGSF_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7348022460938 2 500.73474 999.454927 0.36914 0.00018484 -1.9806 -0.00099174 -1.6114 -0.00080691 500.7337650191834 69.72 0.4405 69.72 69.423 69.863 0 42 20 3 0 0 0 0.48152 1 38742 38742 8.5933 0 1 2368500 68258 9728 45416 46436 79707 79707 -0.0448221795597874 VFDEADRL 8 Unmodified _VFDEADRL_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7402954101562 2 482.740357 963.46616 0.30545 0.00014745 -0.43144 -0.00020827 -0.12599 -6.0821E-05 482.74001910284716 39.599 0.21266 39.599 39.508 39.72 0 16 9 2 0 0 0 0.22971 1 21257 21257 65.235 0 1 3573900 68259 3676 45417 46437 79708 79708 -0.017033958618526412 VFDEADRMF 9 Oxidation (M) _VFDEADRM(Oxidation (M))F_ VFDEADRM(1)F VFDEADRM(52)F 0 0 1 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2504272460938 2 573.250231 1144.48591 0.29918 0.00017151 -0.45881 -0.00026302 -0.15963 -9.1509E-05 573.2501240123181 40.072 0.3832 40.072 39.873 40.257 0 59 18 4 0 0 0 0.036857 2 21457 21457;21561 51.63 20.993 1 15912000 68260 10066 45418 46438 79709;79710 79709 1633 -0.08055387913418599 VFDEADRMF 9 Oxidation (M) _VFDEADRM(Oxidation (M))F_ VFDEADRM(1)F VFDEADRM(52)F 0 0 1 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2501831054688 2 573.250231 1144.48591 0.65698 0.00037662 -0.44959 -0.00025773 0.20739 0.00011889 573.249801314963 46.148 0.40396 41.193 40.951 41.355 -4.9549 46 26 2 0 0 0 0.036857 2 28362 28362;28501 51.63 16.698 1 15807000 68261 10066 45418 46438 79711;79712 79711 1633 -0.08055387913418599 VFDEADRMF 9 Unmodified _VFDEADRMF_ 0 0 0 ENSG00000198231|ENST00000389924|DDX42;nc|ENSG00000198231|Q86XP3-2|DDX42 ENSG00000198231|ENST00000389924|DDX42 ENSG00000198231|ENST00000389924|DDX42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2529907226562 2 565.252774 1128.491 0.77591 0.00043858 0.077861 4.4011E-05 0.85377 0.00048259 565.2529006184715 61.989 0.39264 55.813 55.557 55.95 -6.1757 29 21 2 0 0 0 0.0094097 1 39914 39914 82.529 54.042 1 31540000 68262 10066 45418 46439 79713 79713 -0.06811084050787031 VFDEAIRAV 9 Unmodified _VFDEAIRAV_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.27978515625 2 510.279649 1018.54475 0.50406 0.00025721 0.017531 8.9456E-06 0.52159 0.00026616 510.27952641124693 49.185 0.3687 49.185 49.004 49.373 0 62 17 5 0 0 0 0.044011 1 27058 27058 47.749 17.524 1 158620000 68263 4802 45419 46440 79714 79714 0.03621456443227089 VFDEAIRAV 9 Unmodified _VFDEAIRAV_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2798767089844 2 510.279649 1018.54475 0.51895 0.00026481 0.20436 0.00010428 0.72331 0.00036909 510.2796034296541 49.543 0.4696 49.151 48.943 49.412 -0.3923 65 23 5 0 0 0 0.028475 1 26664 26664 56.177 25.952 1 167360000 68264 4802 45419 46440 79715 79715 0.03621456443227089 VFDEAIRAV 9 Unmodified _VFDEAIRAV_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7613830566406 2 510.279649 1018.54475 0.66996 0.00034187 0.55252 0.00028194 1.2225 0.0006238 510.2797029932059 49.186 0.31165 49.142 48.964 49.275 -0.04369 33 14 3 0 0 0 0.13704 1 26582 26582 32.786 14.639 1 8428800 68265 4802 45419 46440 79716 79716 0.03621456443227089 VFDEAIRAV 9 Unmodified _VFDEAIRAV_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2801208496094 2 510.279649 1018.54475 0.12797 6.5299E-05 -0.0087506 -4.4653E-06 0.11922 6.0834E-05 510.2796431162041 56.191 0.91393 50.214 49.805 50.719 -5.9769 179 53 5 0 0 0 0.023481 3 35713 35713;35849;35982 60.074 27.768 1 788500000 68266 4802 45419 46440 79717;79718;79719 79717 0.03621456443227089 VFDEAIRAVL 10 Unmodified _VFDEAIRAVL_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.8218383789062 2 566.821681 1131.62881 -0.052413 -2.9709E-05 1.5937 0.00090334 1.5413 0.00087363 566.8223404407246 71 0.22884 71 70.913 71.142 0 16 9 2 0 0 0 0.35999 1 39543 39543 33.445 12.991 1 820050 68267 4802 45420 46441 79720 79720 0.06825987540128153 VFDEAIRAVL 10 Unmodified _VFDEAIRAVL_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.822509765625 2 566.821681 1131.62881 0.66918 0.00037931 0.5866 0.0003325 1.2558 0.00071181 566.8218754462791 71.439 0.64605 70.962 70.767 71.413 -0.47735 89 26 5 0 0 0 0.040797 2 39168 39066;39168 71.708 45.059 1 69851000 68268 4802 45420 46441 79721;79722 79722 0.06825987540128153 VFDEAIRAVL 10 Unmodified _VFDEAIRAVL_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8224487304688 2 566.821681 1131.62881 1.4152 0.00080219 -0.42467 -0.00024071 0.99057 0.00056148 566.8213084990595 70.946 0.72298 70.982 70.763 71.486 0.035515 102 32 5 0 0 0 0.048562 2 39087 38982;39087 71.708 38.922 1 235050000 68269 4802 45420 46441 79723;79724 79724 0.06825987540128153 VFDEAIRAVL 10 Unmodified _VFDEAIRAVL_ 0 0 0 ENST00000488373.5_1_7:6415539-6442074:+|nuORF;ENSG00000169750|ENST00000306897|RAC3;ENSG00000136238|ENST00000348035|RAC1;nc|ENSG00000136238|P63000-2|RAC1;ENST00000419413.1_1_X:136523419-136523611:-|nuORF;ENSG00000128340|ENST00000249071|RAC2 ENST00000488373.5_1_7:6415539-6442074:+|nuORF ENST00000488373.5_1_7:6415539-6442074:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8223266601562 2 566.821681 1131.62881 0.85528 0.00048479 0.80583 0.00045676 1.6611 0.00094156 566.821698701556 85.901 1.6466 79.725 78.6 80.247 -6.1757 257 96 4 0 0 0 0.025682 8 56289 55880;56016;56154;56289;56425;56561;56691;56823 80.676 47.89 1 225530000 68270 4802 45420 46441 79725;79726;79727;79728;79729;79730;79731;79732 79728 0.06825987540128153 VFDEAVRV 8 Unmodified _VFDEAVRV_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000475867.5_1_10:5963439-5965826:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7538757324219 2 467.753267 933.491981 0.3405 0.00015927 -0.098709 -4.6171E-05 0.24179 0.0001131 467.7531529679644 43.388 0.24403 43.388 43.242 43.486 0 28 11 3 0 0 0 0.22971 1 23545 23545 65.235 16.889 1 9952700 68271 4609 45421 46442 79733 79733 0.022574983804247495 VFDEAVRV 8 Unmodified _VFDEAVRV_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1;ENST00000475867.5_1_10:5963439-5965826:+|nuORF ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MSMS AL20221201_MKP_PDAC_01 4 467.7521667480469 2 467.753267 933.491981 NaN NaN NaN NaN NaN NaN NaN 49.544 1 44.148 43.648 44.648 -5.3961 0 0 0 0.1891 1 30964 30964 85.272 34.417 1 68272 4609 45421 46442 79734 79734 0.022574983804247495 VFDERAANF 9 Unmodified _VFDERAANF_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7592163085938 2 534.759081 1067.50361 -0.0015327 -8.1964E-07 -1.8077 -0.00096669 -1.8092 -0.00096751 534.7581919123008 40.499 0.11662 40.499 40.412 40.529 0 9 5 2 0 0 0 0.0082548 1 21763 21763 96.367 51.96 1 7131500 68273 613 45422 46443 79735 79735 -0.027443045962627366 VFDERAANF 9 Unmodified _VFDERAANF_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MSMS AL20221201_MKP_PDAC_01 4 534.7605590820312 2 534.759081 1067.50361 NaN NaN NaN NaN NaN NaN NaN 46.382 1 41.302 40.802 41.802 -5.0805 0 0 0 0.019104 1 28637 28637 79.596 28.741 1 68274 613 45422 46443 79736 79736 -0.027443045962627366 VFDEVVQI 8 Unmodified _VFDEVVQI_ 0 0 0 ENST00000371871.8_1_1:47838675-47842417:+|nuORF;nc|ENSG00000162368|P30085-2|CMPK1;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1 ENST00000371871.8_1_1:47838675-47842417:+|nuORF ENST00000371871.8_1_1:47838675-47842417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.7560729980469 2 474.755475 947.496398 0.33658 0.00015979 -0.86278 -0.00040961 -0.5262 -0.00024982 474.7552884933722 69.289 0.29728 69.289 69.103 69.4 0 22 12 2 0 0 0 0.5284 1 38571 38571 32.117 15.175 1 1832800 68275 6850 45423 46444 79737 79737 0.020549628033450063 VFDEVVQI 8 Unmodified _VFDEVVQI_ 0 0 0 ENST00000371871.8_1_1:47838675-47842417:+|nuORF;nc|ENSG00000162368|P30085-2|CMPK1;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1 ENST00000371871.8_1_1:47838675-47842417:+|nuORF ENST00000371871.8_1_1:47838675-47842417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.75634765625 2 474.755475 947.496398 0.012291 5.8352E-06 0.19053 9.0455E-05 0.20282 9.6291E-05 474.7557694622758 69.767 0.2196 69.287 69.182 69.401 -0.47903 14 9 2 0 0 0 0.5953 1 38167 38167 26.341 10.573 1 869160 68276 6850 45423 46444 79738 79738 0.020549628033450063 VFDEVVQIF 9 Unmodified _VFDEVVQIF_ 0 0 0 ENST00000371871.8_1_1:47838675-47842417:+|nuORF;nc|ENSG00000162368|P30085-2|CMPK1;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1 ENST00000371871.8_1_1:47838675-47842417:+|nuORF ENST00000371871.8_1_1:47838675-47842417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2940063476562 2 548.289682 1094.56481 0.35329 0.00019371 3.6174 0.0019834 3.9706 0.0021771 548.2920472568472 92.209 0.30988 91.728 91.57 91.88 -0.48092 25 13 3 0 0 0 0.39863 1 50394 50394 12.532 0.89125 1 615640 68277 6850 45424 46445 79739 79739 0.02131207383195033 VFDEVVQIF 9 Unmodified _VFDEVVQIF_ 0 0 0 ENST00000371871.8_1_1:47838675-47842417:+|nuORF;nc|ENSG00000162368|P30085-2|CMPK1;nc|ENSG00000162368|P30085|CMPK1;ENSG00000162368|ENST00000371873|CMPK1 ENST00000371871.8_1_1:47838675-47842417:+|nuORF ENST00000371871.8_1_1:47838675-47842417:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2901611328125 2 548.289682 1094.56481 0.20827 0.00011419 0.34922 0.00019147 0.55749 0.00030566 548.2899664230331 99.809 0.18283 93.633 93.558 93.74 -6.1757 20 13 2 0 0 0 0.016184 1 66609 66609 67.344 36.076 1 26504000 68278 6850 45424 46445 79740 79740 0.02131207383195033 VFDEWVSKL 9 Unmodified _VFDEWVSKL_ 0 0 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7968139648438 2 561.795132 1121.57571 0.74027 0.00041588 2.0386 0.0011453 2.7789 0.0015612 562.2978953261706 71.993 0.23033 71.517 71.363 71.594 -0.47609 20 8 3 0 0 0 0.14859 1 39386 39386 36.506 17.249 1 2138500 68279 1043 45425 46446 79741 79741 0.019786097574751693 VFDEWVSKL 9 Unmodified _VFDEWVSKL_ 0 0 0 nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 nc|ENSG00000070882|Q9H4L5-4|OSBPL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.2984619140625 2 561.795132 1121.57571 1.3448 0.00075552 -0.15376 -8.6382E-05 1.1911 0.00066913 561.7951472146773 71.448 0.31953 71.487 71.323 71.642 0.039024 25 14 2 0 0 0 0.058763 1 39316 39316 53.404 37.557 1 2306900 68280 1043 45425 46446 79742 79742 0.019786097574751693 VFDFGRRPVLL 11 Unmodified _VFDFGRRPVLL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2593383789062 3 440.25919 1317.75574 1.1101 0.00048872 -0.81476 -0.00035871 0.29531 0.00013001 440.25878656135166 66.685 0.3483 66.694 66.519 66.868 0.0095673 59 16 5 0 0 0 0.20815 2 36539 36539;36647 31.636 13.773 1 64581000 68281 16188 45426 46447 79743;79744 79743 0.10957333485157505 VFDFGRRPVLL 11 Unmodified _VFDFGRRPVLL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2591857910156 3 440.25919 1317.75574 0.21107 9.2925E-05 0.27985 0.00012321 0.49092 0.00021613 440.2593596017212 93.117 0.31146 86.942 86.788 87.1 -6.1757 66 21 4 0 0 0 0.063019 2 61577 61577;61713 48.073 34.554 1 151800000 68282 16188 45426 46447 79745;79746 79745 0.10957333485157505 VFDFGRRPVLL 11 Unmodified _VFDFGRRPVLL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.88330078125 2 659.885147 1317.75574 -0.21402 -0.00014123 0.24309 0.00016041 0.029076 1.9187E-05 659.8852255592161 93.141 0.22717 86.965 86.84 87.067 -6.1757 37 16 3 0 0 0 0.00051196 1 61589 61589 96.936 58.76 1 38289000 68283 16188 45426 46447 79747 79747 0.10957333485157505 VFDGAVII 8 Unmodified _VFDGAVII_ 0 0 0 ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENST00000561302.5_1_15:76430142-76521275:+|nuORF ENSG00000169758|ENST00000388942|TMEM266 ENSG00000169758|ENST00000388942|TMEM266 MULTI-MSMS AL20221201_MKP_PDAC_01 4 833.4796752929688 1 833.476731 832.469455 1.308 0.0010902 2.0432 0.001703 3.3512 0.0027932 833.4778888276097 100.05 0.079445 93.873 93.819 93.898 -6.1757 6 4 2 0 0 0 0.28922 1 66806 66806 56.541 9.6204 1 7252100 68284 7912 45427 46448 79748 79748 0.046518989828200574 VFDIHVIDF 9 Unmodified _VFDIHVIDF_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2919921875 2 552.78985 1103.56515 0.43933 0.00024286 0.58173 0.00032158 1.0211 0.00056443 552.7900373749052 85.985 0.27541 85.985 85.843 86.118 0 31 12 3 0 0 0 0.2546 1 47609 47609 26.884 21.123 1 1424300 68285 3650 45428 46449 79749 79749 0.017506271030242715 VFDIHVIDF 9 Unmodified _VFDIHVIDF_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.789794921875 2 552.78985 1103.56515 0.62521 0.00034561 -0.37438 -0.00020695 0.25083 0.00013866 552.7896492143833 86.51 0.56721 86.007 85.674 86.242 -0.50319 94 23 6 0 0 0 0.015688 2 47374 47276;47374 85.272 56.785 1 42853000 68286 3650 45428 46449 79750;79751 79751 0.017506271030242715 VFDIHVIDF 9 Unmodified _VFDIHVIDF_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.79150390625 2 552.78985 1103.56515 NaN NaN NaN NaN NaN NaN NaN 85.968 1 86.03 85.53 86.53 0.061638 0 0 0 0.023462 1 47621 47621 92.491 64.005 1 68287 3650 45428 46449 79752 79752 0.017506271030242715 VFDIHVIDF 9 Unmodified _VFDIHVIDF_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7893676757812 2 552.78985 1103.56515 0.58248 0.00032199 -0.16472 -9.1056E-05 0.41776 0.00023093 552.7896439826696 98.646 0.23523 92.47 92.401 92.637 -6.1757 52 17 5 0 0 0 0.091924 1 65436 65436 46.021 17.534 1 613160000 68288 3650 45428 46449 79753 79753 0.017506271030242715 VFDIHVVYV 9 Unmodified _VFDIHVVYV_ 0 0 0 nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.8003540039062 2 545.800217 1089.58588 0.43003 0.00023471 -0.64368 -0.00035132 -0.21365 -0.00011661 545.7993623110367 75.704 0.42583 75.226 75.011 75.437 -0.47714 33 19 3 0 0 0 0.14602 1 41433 41433 28.487 18.303 1 3414200 68289 16261 45429 46450 79754 79754 0.044672174827155686 VFDIHVVYV 9 Unmodified _VFDIHVVYV_ 0 0 0 nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ nc|ENSG00000149177|Q12913-3|PTPRJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8008422851562 2 545.800217 1089.58588 0.24042 0.00013122 -0.30118 -0.00016439 -0.060758 -3.3162E-05 545.7995329553728 75.179 0.23837 75.225 75.108 75.346 0.045967 23 11 3 0 0 0 0.047196 1 41443 41443 46.021 26.582 1 2942100 68290 16261 45429 46450 79755 79755 0.044672174827155686 VFDIRIKAI 9 Unmodified _VFDIRIKAI_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40 nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2207336425781 3 358.893848 1073.65972 0.046444 1.6668E-05 0.1123 4.0304E-05 0.15875 5.6973E-05 358.89386409587104 21.272 0.13986 21.286 21.233 21.373 0.013796 30 24 2 0 0 0 0.18118 1 10931 10931 12.241 4.6317 1 3757200 68291 1425 45430 46451 79756 79756 0.12583185645030426 VFDIVIHRF 9 Unmodified _VFDIVIHRF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5538024902344 3 382.553715 1144.63931 0.31161 0.00011921 0.27585 0.00010553 0.58746 0.00022473 382.55377082358416 63.15 0.32797 63.129 62.969 63.297 -0.021614 45 16 4 0 0 0 0.010818 1 34516 34516 79.596 65.191 1 16679000 68292 2877 45431 46452 79757 79757 0.07278014985217851 VFDIVIHRF 9 Unmodified _VFDIVIHRF_ 0 0 0 nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF nc|ENSG00000112282|Q9ULK4-4|MED23 nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5541687011719 3 382.553715 1144.63931 1.4879 0.0005692 -0.14596 -5.5836E-05 1.3419 0.00051336 382.5536910862289 87.174 0.33994 80.998 80.806 81.146 -6.1757 30 18 2 0 0 0 0.03568 1 57521 57521 40.239 28.744 1 9721100 68293 2877 45431 46452 79758 79758 0.07278014985217851 VFDKTLAEL 9 Unmodified _VFDKTLAEL_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2894897460938 2 518.289682 1034.56481 -0.049374 -2.559E-05 -0.21133 -0.00010953 -0.2607 -0.00013512 518.289528968506 56.24 0.55832 56.24 56.028 56.586 0 80 25 4 0 0 0 0.015688 2 31211 31211;31318 67.838 25.999 1 156280000 68294 8126 45432 46453 79759;79760 79759 0.04891207383184337 VFDKTLAEL 9 Unmodified _VFDKTLAEL_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2888793945312 2 518.289682 1034.56481 -0.46277 -0.00023985 -0.039169 -2.0301E-05 -0.50194 -0.00026015 518.2895542123321 56.695 0.44672 56.209 56.032 56.479 -0.48554 91 24 5 0 0 0 0.013609 2 30714 30714;30828 70.332 34.205 1 276980000 68295 8126 45432 46453 79761;79762 79761 0.04891207383184337 VFDKTLAEL 9 Unmodified _VFDKTLAEL_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2896118164062 2 518.289682 1034.56481 -0.057451 -2.9776E-05 0.3352 0.00017373 0.27775 0.00014396 518.2896888435153 56.366 0.24466 56.297 56.174 56.419 -0.068737 35 12 3 0 0 0 0.053952 1 30629 30629 43.982 4.0245 1 24436000 68296 8126 45432 46453 79763 79763 0.04891207383184337 VFDKTLAEL 9 Unmodified _VFDKTLAEL_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2899169921875 2 518.289682 1034.56481 0.94137 0.0004879 0.13341 6.9147E-05 1.0748 0.00055705 518.2896965356107 63.116 1.2586 56.941 56.563 57.822 -6.1757 198 69 4 0 0 0 0.0087923 5 40848 40593;40719;40848;40977;41121 103.42 32.286 1 740500000 68297 8126 45432 46453 79764;79765;79766;79767;79768 79766 0.04891207383184337 VFDLIQELF 9 Unmodified _VFDLIQELF_ 0 0 0 ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A ENSG00000121892|ENST00000303538|PDS5A ENSG00000121892|ENST00000303538|PDS5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.3070068359375 2 562.305332 1122.59611 1.0957 0.00061611 1.5015 0.00084429 2.5972 0.0014604 562.3061870251541 102.19 0.094406 96.016 95.957 96.052 -6.1757 11 3 4 0 0 0 0.047196 1 68588 68588 46.021 20.622 1 33449000 68298 3605 45433 46454 79769 79769 0.039717804172596516 VFDLLNIVPWL 11 Unmodified _VFDLLNIVPWL_ 0 0 0 ENST00000417788.5_1_22:22024636-22041216:+|nuORF;ENSG00000100023|ENST00000398831|PPIL2;nc|ENSG00000100023|Q13356-2|PPIL2 ENST00000417788.5_1_22:22024636-22041216:+|nuORF ENST00000417788.5_1_22:22024636-22041216:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.8829345703125 2 664.884281 1327.75401 NaN NaN NaN NaN NaN NaN NaN 100.61 1 100.57 100.07 101.07 -0.04216 0 0 0 0.58065 1 55893 55893 21.537 1.1224 1 68299 1738 45434 46455 79770 79770 0.10324279676501646 VFDLSEKL 8 Unmodified _VFDLSEKL_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.7637023925781 2 475.7633 949.512048 0.62898 0.00029925 -0.11183 -5.3203E-05 0.51715 0.00024604 475.76306425716837 57.256 0.30335 57.256 57.043 57.346 0 25 13 2 0 0 0 0.29252 1 31814 31814 56.177 14.082 1 4499700 68300 3561 45435 46456 79771 79771 0.03527249320381998 VFDLSEKL 8 Unmodified _VFDLSEKL_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.762939453125 2 475.7633 949.512048 0.52058 0.00024767 -0.74372 -0.00035383 -0.22314 -0.00010616 475.76293778350373 57.69 0.30379 57.2 57.046 57.35 -0.48974 30 14 3 0 0 0 0.22971 1 31326 31326 65.235 20.828 1 7001800 68301 3561 45435 46456 79772 79772 0.03527249320381998 VFDLSEKL 8 Unmodified _VFDLSEKL_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7648315429688 2 475.7633 949.512048 1.0572 0.00050297 0.61088 0.00029064 1.6681 0.0007936 475.76352270229796 63.619 0.42546 57.443 57.226 57.652 -6.1757 55 23 3 0 0 0 0.15594 1 41182 41182 85.272 34.417 1 29851000 68302 3561 45435 46456 79773 79773 0.03527249320381998 VFDMAEISI 9 Unmodified _VFDMAEISI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7532348632812 2 512.754618 1023.49468 0.40327 0.00020678 -1.1879 -0.00060909 -0.7846 -0.0004023 512.7537638337536 68.136 0.34158 68.136 68.008 68.35 0 18 16 2 0 0 0 0.43463 1 37971 37971 10.824 2.2306 1 564580 + 68303 21279 45436 46457 79774 79774 -0.016124142769172067 VFDMAEISI 9 Unmodified _VFDMAEISI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.754618 1023.49468 0.40327 0.00020678 -1.1879 -0.00060909 -0.7846 -0.0004023 512.7537638337536 68.136 0.34158 68.136 68.008 68.35 0 -0.1508 0.00037253 NaN 10.824 18 16 2 NaN NaN NaN NaN 0 NaN NaN 0 564580 + 68304 21279 45436 46457 -0.016124142769172067 VFDMAEISI 9 Unmodified _VFDMAEISI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 512.754618 1023.49468 0.13905 7.1297E-05 -1.7307 -0.00088741 -1.5916 -0.00081612 512.7537244518014 68.918 0.24272 68.438 68.242 68.485 -0.48071 0.1508 -0.00018412 NaN 10.824 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 757590 + 68305 21279 45436 46457 -0.016124142769172067 VFDMAGEIGF 10 Unmodified _VFDMAGEIGF_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2525634765625 2 543.252243 1084.48993 1.0722 0.0005825 -0.21534 -0.00011699 0.8569 0.00046551 543.2523534893655 96.209 0.55319 90.033 89.767 90.32 -6.1757 69 33 3 0 0 0 0.14917 2 63776 63644;63776 39.957 27.426 1 19907000 68306 6368 45437 46458 79775;79776 79776 -0.04893298419688108 VFDNDISYI 9 Unmodified _VFDNDISYI_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2623291015625 2 543.261122 1084.50769 0.40833 0.00022183 0.62479 0.00033942 1.0331 0.00056125 543.261576680087 67.064 0.33012 67.064 66.896 67.226 0 29 14 3 0 0 0 0.30562 1 37403 37403 16.942 8.349 1 1863800 68307 8706 45438 46459 79777 79777 -0.03118259893199138 VFDNDISYI 9 Unmodified _VFDNDISYI_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2615356445312 2 543.261122 1084.50769 0.34482 0.00018733 -0.22558 -0.00012255 0.11924 6.4777E-05 543.2609320275662 67.688 0.2925 67.206 67.031 67.323 -0.48218 19 12 2 0 0 0 0.49272 1 36986 36986 7.9102 1.5561 1 858100 68308 8706 45438 46459 79778 79778 -0.03118259893199138 VFDNENFIL 9 Unmodified _VFDNENFIL_ 0 0 0 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7772216796875 2 555.776939 1109.53933 0.68977 0.00038336 0.28552 0.00015868 0.97529 0.00054204 555.7772272083015 86.912 0.41473 86.409 86.217 86.632 -0.50318 41 16 3 0 0 0 0.48152 1 47518 47518 8.5933 0 1 2554600 + 68309 22427 45439 46460 79779 79779 -0.01106267139243755 VFDNENFIL 9 Unmodified _VFDNENFIL_ 0 0 0 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 555.776939 1109.53933 0.46462 0.00025822 0.29449 0.00016367 0.75911 0.00042189 555.7769972033908 86.427 0.25165 86.427 86.242 86.494 0 0.0092259 8.3048E-06 NaN 8.5933 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 314000 + 68310 22427 45439 46460 -0.01106267139243755 VFDNSIKTF 9 Unmodified _VFDNSIKTF_ 0 0 0 ENSG00000128881|ENST00000267890|TTBK2;nc|ENSG00000128881|Q6IQ55-2|TTBK2;nc|ENSG00000128881|Q6IQ55-3|TTBK2 ENSG00000128881|ENST00000267890|TTBK2 ENSG00000128881|ENST00000267890|TTBK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7794189453125 2 535.779482 1069.54441 0.52053 0.00027889 -0.92734 -0.00049685 -0.4068 -0.00021796 535.7779696189162 49.335 0.2826 48.963 48.778 49.06 -0.37172 22 13 3 0 0 0 0.078314 1 26525 26525 38.176 17.304 1 2318100 68311 4096 45440 46461 79780 79780 0.0124203672337444 VFDNVKDFF 9 Unmodified _VFDNVKDFF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7801513671875 2 565.779482 1129.54441 0.85135 0.00048167 0.071039 4.0192E-05 0.92239 0.00052187 565.779752766666 73.284 0.27799 72.808 72.674 72.952 -0.47588 22 12 2 0 0 0 0.1685 1 40101 40101 26.268 9.3258 1 1597700 68312 9970 45441 46462 79781 79781 -0.015179632766148643 VFDNVKDFF 9 Unmodified _VFDNVKDFF_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7816162109375 2 565.779482 1129.54441 0.37363 0.00021139 -0.20813 -0.00011776 0.16549 9.3632E-05 565.7794019379531 72.751 0.25974 72.793 72.661 72.921 0.041725 20 12 2 0 0 0 0.076472 1 40065 40065 38.615 15.878 1 3837400 68313 9970 45441 46462 79782 79782 -0.015179632766148643 VFDPALNLF 9 Unmodified _VFDPALNLF_ 0 0 0 ENSG00000151148|ENST00000342494|UBE3B;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENST00000449510.6_1_12:109955755-109964222:+|nuORF ENSG00000151148|ENST00000342494|UBE3B ENSG00000151148|ENST00000342494|UBE3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2781372070312 2 518.279118 1034.54368 0.82401 0.00042707 0.62828 0.00032563 1.4523 0.00075269 518.2792261495625 100.54 0.17456 94.368 94.27 94.445 -6.1757 19 10 2 0 0 0 0.070838 1 67262 67262 39.957 7.6518 1 57331000 68314 6094 45442 46463 79783 79783 0.027792420743026014 VFDPEHFEL 9 Unmodified _VFDPEHFEL_ 0 0 0 REV__ENST00000398764.3_1_9:116521276-116521525:-|nuORF REV__ENST00000398764.3_1_9:116521276-116521525:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.767822265625 2 566.769114 1131.52368 NaN NaN NaN NaN NaN NaN NaN 68.473 1 67.992 67.492 68.492 -0.48071 0 0 0 0.23581 1 37422 37422 28.487 6.7402 1 + 68315 26570 45443 46464 79784 79784 -0.03682553656290111 VFDPFTFE 8 Unmodified _VFDPFTFE_ 0 0 0 REV__ENSG00000087586|ENST00000395915|AURKA REV__ENSG00000087586|ENST00000395915|AURKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2347412109375 2 501.234376 1000.4542 0.18727 9.3868E-05 0.30303 0.00015189 0.4903 0.00024575 501.23440798849924 87.445 0.3929 86.941 86.708 87.101 -0.50423 40 16 3 0 0 0 0.80232 1 47871 47871 5.2307 1.2863 1 1937200 + 68316 17793 45444 46465 79785 79785 -0.04601012605053256 VFDPHGTL 8 Unmodified _VFDPHGTL_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2255554199219 2 443.226885 884.439217 0.68539 0.00030378 -0.28169 -0.00012485 0.40369 0.00017893 443.2265498951791 38.815 0.2693 38.815 38.66 38.929 0 36 11 4 0 0 0 0.2655 2 20716 20716;20825 59.795 31.622 1 12306000 68317 4861 45445 46466 79786;79787 79786 -0.007624596823802676 VFDPHGTL 8 Unmodified _VFDPHGTL_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2264099121094 2 443.226885 884.439217 -0.0642 -2.8455E-05 -0.24018 -0.00010645 -0.30438 -0.00013491 443.22648476360246 39.096 0.16478 38.809 38.696 38.861 -0.28687 11 6 2 0 0 0 0.2655 1 20594 20594 59.795 31.622 1 2342200 68318 4861 45445 46466 79788 79788 -0.007624596823802676 VFDPHGTL 8 Unmodified _VFDPHGTL_ 0 0 0 nc|ENSG00000136824|O95347-2|SMC2;ENSG00000136824|ENST00000374793|SMC2 nc|ENSG00000136824|O95347-2|SMC2 nc|ENSG00000136824|O95347-2|SMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2276611328125 2 443.226885 884.439217 0.65267 0.00028928 0.3215 0.0001425 0.97417 0.00043178 443.22703600791965 44.151 0.46527 39.299 39.052 39.517 -4.852 57 32 3 0 0 0 0.21786 2 26959 26824;26959 67.035 38.862 1 36442000 68319 4861 45445 46466 79789;79790 79790 -0.007624596823802676 VFDPIGHF 8 Unmodified _VFDPIGHF_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2380676269531 2 466.237253 930.459953 0.54391 0.00025359 -1.532 -0.00071429 -0.98812 -0.0004607 466.2376120228261 64.523 0.40665 64.038 63.718 64.125 -0.48512 29 18 3 0 0 0 0.48233 1 35183 35183 36.466 15.595 1 1118800 68320 5378 45446 46467 79791 79791 -0.008058693027237496 VFDPIVRH 8 Unmodified _VFDPIVRH_ 0 0 0 REV__ENSG00000153201|ENST00000283195|RANBP2 REV__ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7782287597656 2 491.777077 981.5396 1.51 0.00074257 2.4939 0.0012264 4.0039 0.001969 491.77784460885084 71.008 0.32568 71.044 70.855 71.181 0.035515 35 14 3 0 0 0 0.80143 1 39071 39071 5.7604 0 1 4466600 + 68321 21158 45447 46468 79792 79792 0.04809197371275786 VFDPKVFTF 9 Unmodified _VFDPKVFTF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1;nc|ENSG00000112297|Q9Y4K1-1|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2952880859375 2 550.294768 1098.57498 0.15028 8.2697E-05 0.49336 0.00027149 0.64363 0.00035419 550.2951640058105 77.448 0.64267 77.498 77.033 77.675 0.05011 68 26 5 0 0 0 0.013118 2 42689 42689;42791 71.708 53 1 31601000 68322 2879 45448 46469 79793;79794 79793 0.029638151084100173 VFDPTGRTF 9 Unmodified _VFDPTGRTF_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7647094726562 2 520.263999 1038.51345 0.034434 1.7915E-05 0.19316 0.00010049 0.22759 0.00011841 520.2641325988425 45.875 0.22995 45.551 45.429 45.659 -0.32425 26 13 3 0 0 0 0.0087873 1 24520 24520 103.35 52.498 1 20066000 68323 4640 45449 46470 79795 79795 -0.0042711659086762666 VFDPTGRTF 9 Unmodified _VFDPTGRTF_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2642822265625 2 520.263999 1038.51345 0.072752 3.785E-05 0.31134 0.00016198 0.38409 0.00019983 520.2641549656411 45.582 0.24146 45.554 45.439 45.681 -0.028011 21 12 2 0 0 0 0.020973 1 24468 24468 62.573 14.227 1 9150000 68324 4640 45449 46470 79796 79796 -0.0042711659086762666 VFDPVPVGV 9 Unmodified _VFDPVPVGV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.513916015625 1 928.513845 927.506569 0.69073 0.00064135 -0.69048 -0.00064112 0.00024617 2.2857E-07 928.5133845953661 73.115 0.28564 73.115 72.985 73.271 0 23 12 2 0 0 0 0.052168 2 40763 40666;40763 44.407 30.899 1 3640800 68325 4745 45450 46471 79797;79798 79798 0.039915705285807235 VFDPVPVGV 9 Unmodified _VFDPVPVGV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7605285644531 2 464.760561 927.506569 0.92577 0.00043026 -1.2363 -0.00057459 -0.31055 -0.00014433 464.75978875639896 73.152 0.32677 73.152 72.966 73.293 0 34 14 3 0 0 0 0.12841 2 40685 40685;40788 30.225 16.717 1 2314600 68326 4745 45450 46471 79799;79800 79799 0.039915705285807235 VFDPVPVGV 9 Unmodified _VFDPVPVGV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5130004882812 1 928.513845 927.506569 0.63084 0.00058574 -1.0963 -0.0010179 -0.46542 -0.00043214 928.512549786511 73.663 0.32692 73.187 72.996 73.323 -0.47588 34 13 3 0 0 0 0.010877 2 40343 40244;40343 77.984 41.94 1 6241900 68327 4745 45450 46471 79801;79802 79802 0.039915705285807235 VFDPVPVGV 9 Unmodified _VFDPVPVGV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.7606201171875 2 464.760561 927.506569 0.58105 0.00027005 -0.67307 -0.00031281 -0.09202 -4.2767E-05 464.76012137123 73.633 0.34618 73.157 72.996 73.342 -0.47588 32 14 3 0 0 0 0.052168 2 40261 40261;40368 44.407 30.899 1 3043700 68328 4745 45450 46471 79803;79804 79803 0.039915705285807235 VFDPVPVGV 9 Unmodified _VFDPVPVGV_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9;ENST00000490519.1_1_1:182845328-182845691:+|nuORF ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.515625 1 928.513845 927.506569 1.1834 0.0010988 -0.17543 -0.00016289 1.008 0.00093591 928.5138850875744 81.523 0.43372 75.348 75.116 75.55 -6.1757 53 24 3 0 0 0 0.0083087 4 53518 53394;53507;53518;53641 97.075 46.22 1 23198000 68329 4745 45450 46471 79805;79806;79807;79808 79807 0.039915705285807235 VFDPVQKTL 9 Unmodified _VFDPVQKTL_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7958374023438 2 523.797675 1045.5808 0.25147 0.00013172 -0.99023 -0.00051868 -0.73876 -0.00038696 523.7966544488124 48.615 0.28904 48.244 48.061 48.35 -0.37172 34 15 3 0 0 0 0.023481 1 26144 26144 60.074 38.327 1 12164000 68330 6010 45451 46472 79809 79809 0.05982913620096042 VFDPVQKTL 9 Unmodified _VFDPVQKTL_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7981567382812 2 523.797675 1045.5808 0.79777 0.00041787 -0.10649 -5.5778E-05 0.69129 0.00036209 523.7975031391555 54.567 0.33875 48.702 48.542 48.881 -5.8653 38 20 2 0 0 0 0.0061223 2 34571 34571;34715 114.2 68.181 1 41692000 68331 6010 45451 46472 79810;79811 79810 0.05982913620096042 VFDPVQKTL 9 Unmodified _VFDPVQKTL_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 523.797675 1045.5808 0.14906 7.8075E-05 -0.76561 -0.00040102 -0.61655 -0.00032295 523.7972221184771 48.316 0.1432 48.316 48.251 48.394 0 0.036234 0.00013995 NaN 60.074 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2830400 68332 6010 45451 46472 0.05982913620096042 VFDPVQKTLL 10 Unmodified _VFDPVQKTLL_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;ENST00000531261.1_1_11:62365080-62365595:-|nuORF ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.3389892578125 2 580.339707 1158.66486 0.33494 0.00019438 0.40701 0.00023621 0.74196 0.00043059 580.3396759893376 63.3 0.21948 62.814 62.729 62.948 -0.48617 17 9 2 0 0 0 0.34249 1 34535 34535 24.991 14.917 1 1085700 68333 6010 45452 46473 79812 79812 0.09187444717008475 VFDPVTKL 8 Unmodified _VFDPVTKL_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7677307128906 2 459.768386 917.522219 -0.048313 -2.2213E-05 -1.4417 -0.00066286 -1.49 -0.00068507 459.767892303712 54.737 0.25735 54.271 54.143 54.4 -0.46664 19 12 2 0 0 0 0.44637 1 29686 29686 39.95 9.3132 1 6063300 68334 3240 45453 46474 79813 79813 0.060158570455996596 VFDPVTKL 8 Unmodified _VFDPVTKL_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.7687072753906 2 459.768386 917.522219 1.0857 0.00049915 0.025352 1.1656E-05 1.111 0.00051081 459.76846110505033 60.548 0.30896 54.4 54.204 54.513 -6.1478 21 16 2 0 0 0 0.29252 1 38937 38937 56.177 11.77 1 12779000 68335 3240 45453 46474 79814 79814 0.060158570455996596 VFDPVTKLW 9 Unmodified _VFDPVTKLW_ 0 0 0 ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP;ENST00000494880.5_1_1:185268818-185270317:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF ENST00000480769.5_1_1:185267169-185274781:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.80908203125 2 552.808042 1103.60153 1.0023 0.0005541 0.5506 0.00030438 1.5529 0.00085848 552.807814916027 92.267 0.12923 86.092 85.986 86.115 -6.1757 13 7 2 0 0 0 0.098164 1 61019 61019 33.445 1.3279 1 7679700 68336 3240 45454 46475 79815 79815 0.05387503999736509 VFDRGLGG 8 Unmodified _VFDRGLGG_ 0 0 0 REV__ENST00000573026.1_1_17:1248210-1248261:-|nuORF REV__ENST00000573026.1_1_17:1248210-1248261:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 821.4336547851562 1 820.431178 819.423902 0.40861 0.00033523 -0.48946 -0.00040157 -0.08085 -6.6332E-05 820.4303941911604 41.345 0.13367 36.738 36.639 36.772 -4.6079 9 7 2 0 0 0 0.75262 1 24802 24802 12.532 0 1 5253000 + 68337 28991 45455 46476 79816 79816 0.00696673520440072 VFDRYAAVCR 10 Unmodified _VFDRYAAVCR_ 0 0 0 nc|ENSG00000182477|P59922|OR2B8P nc|ENSG00000182477|P59922|OR2B8P nc|ENSG00000182477|P59922|OR2B8P MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.5382080078125 3 400.537847 1198.59171 1.1138 0.00044612 -0.96268 -0.00038559 0.15113 6.0535E-05 400.537568867405 42.8 0.34306 38.115 37.917 38.26 -4.6846 54 21 4 0 0 0 0.56348 1 25962 25962 7.9454 0 1 22673000 68338 16438 45456 46477 79817 79817 0.00035992722723676707 VFDTAIAHL 9 Unmodified _VFDTAIAHL_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7696838378906 2 493.768917 985.523281 0.37796 0.00018662 -0.51008 -0.00025186 -0.13212 -6.5238E-05 493.7685999856424 59.597 0.24696 59.597 59.489 59.736 0 18 10 2 0 0 0 0.019979 1 33203 33203 63.563 38.889 1 2515400 68339 8995 45457 46478 79818 79818 0.029940714145027414 VFDTAIAHL 9 Unmodified _VFDTAIAHL_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7681274414062 2 493.768917 985.523281 0.31781 0.00015692 -0.72539 -0.00035817 -0.40758 -0.00020125 493.76849337612776 60.128 0.33577 59.637 59.45 59.786 -0.49079 49 16 4 0 0 0 0.019979 2 32671 32671;32771 63.563 7.0216 1 53251000 68340 8995 45457 46478 79819;79820 79819 0.029940714145027414 VFDTAIAHL 9 Unmodified _VFDTAIAHL_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7688903808594 2 493.768917 985.523281 0.50924 0.00025145 -0.045451 -2.2442E-05 0.46379 0.00022901 493.7687184377459 59.727 0.26208 59.674 59.535 59.797 -0.053059 26 12 3 0 0 0 0.019979 1 32561 32561 63.563 0 1 7707700 68341 8995 45457 46478 79821 79821 0.029940714145027414 VFDTAIAHL 9 Unmodified _VFDTAIAHL_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7689819335938 2 493.768917 985.523281 0.81914 0.00040447 0.24386 0.00012041 1.063 0.00052488 493.7690878619849 66.065 0.67655 59.889 59.692 60.368 -6.1757 101 38 4 0 0 0 0.027803 2 42847 42847;43125 56.541 24.236 1 117610000 68342 8995 45457 46478 79822;79823 79822 0.029940714145027414 VFDTAIAHLF 10 Unmodified _VFDTAIAHLF_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.3035888671875 2 567.303124 1132.5917 0.67368 0.00038218 1.1758 0.00066702 1.8494 0.0010492 567.3038060926607 84.345 0.26655 83.846 83.689 83.955 -0.49961 27 11 3 0 0 0 0.37389 1 46129 46129 23.148 15.238 1 1490400 68343 8995 45458 46479 79824 79824 0.030703159943413993 VFDTAIAHLF 10 Unmodified _VFDTAIAHLF_ 0 0 0 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 ENSG00000181788|ENST00000312960|SIAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8056030273438 2 567.303124 1132.5917 0.10563 5.9924E-05 0.20713 0.0001175 0.31276 0.00017743 567.3031724367384 83.761 0.32303 83.824 83.628 83.951 0.063171 29 12 3 0 0 0 0.031389 1 46335 46335 67.344 42.67 1 36899000 68344 8995 45458 46479 79825 79825 0.030703159943413993 VFDTDEMKAF 10 Unmodified _VFDTDEMKAF_ 0 0 0 REV__ENST00000590279.1_1_19:12917826-12918144:+|nuORF REV__ENST00000590279.1_1_19:12917826-12918144:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.802978515625 2 601.773539 1201.53253 0.10232 6.1575E-05 0.684 0.00041161 0.78632 0.00047319 601.7739360459295 65.612 0.22572 65.128 65.041 65.267 -0.48428 14 9 2 0 0 0 0.23489 1 35844 35844 7.9102 1.7044 1 846180 + 68345 18384 45459 46480 79826 79826 -0.06017948082126168 VFDTECNVEV 10 Unmodified _VFDTECNVEV_ 0 0 0 REV__nc|ENSG00000123297|P43897-3|TSFM REV__nc|ENSG00000123297|P43897-3|TSFM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7560424804688 2 577.755346 1153.49614 NaN NaN NaN NaN NaN NaN NaN 48.003 1 48.003 47.503 48.503 0 0 0 0 0.85122 1 26309 26309 10.074 0 1 + 68346 19380 45460 46481 79827 79827 -0.07446824978842415 VFDTSIAQL 9 Unmodified _VFDTSIAQL_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2671813964844 2 497.266207 992.517862 0.38563 0.00019176 1.2502 0.0006217 1.6359 0.00081347 497.2668140961078 68.581 0.40972 68.581 68.33 68.74 0 49 18 3 0 0 0 0.023164 1 38201 38201 60.39 24.345 1 3855500 68347 9825 45461 46482 79828 79828 0.021303478320305658 VFDTSIAQL 9 Unmodified _VFDTSIAQL_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2665710449219 2 497.266207 992.517862 0.11935 5.9349E-05 0.38559 0.00019174 0.50494 0.00025109 497.26656702106226 69.098 0.95648 68.617 67.967 68.923 -0.48071 79 42 3 0 0 0 0.023164 2 37800 37697;37800 60.39 27.707 1 36189000 68348 9825 45461 46482 79829;79830 79830 0.021303478320305658 VFDTSIAQL 9 Unmodified _VFDTSIAQL_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 993.5254516601562 1 993.525138 992.517862 0.032716 3.2504E-05 0.73694 0.00073217 0.76966 0.00076468 993.52608103241 69.092 0.27733 68.612 68.485 68.763 -0.48071 27 11 3 0 0 0 0.087258 2 37733 37733;37835 36.044 16.605 1 2603700 68349 9825 45461 46482 79831;79832 79831 0.021303478320305658 VFDTSIAQL 9 Unmodified _VFDTSIAQL_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 993.5283813476562 1 993.525138 992.517862 0.26055 0.00025887 1.2169 0.001209 1.4775 0.0014679 993.5268150332943 76.703 0.28731 70.527 70.333 70.62 -6.1757 19 14 2 0 0 0 0.008678 2 50105 50105;50224 88.904 10.754 1 9050000 68350 9825 45461 46482 79833;79834 79833 0.021303478320305658 VFDTSIAQL 9 Unmodified _VFDTSIAQL_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2662658691406 2 497.266207 992.517862 0.46481 0.00023113 0.58901 0.0002929 1.0538 0.00052403 497.26646256922413 76.635 0.54011 70.46 70.219 70.759 -6.1757 68 28 3 0 0 0 0.010877 2 50152 50152;50266 77.984 20.513 1 76753000 68351 9825 45461 46482 79835;79836 79835 0.021303478320305658 VFDTSIAQLF 10 Unmodified _VFDTSIAQLF_ 0 0 0 ENSG00000196470|ENST00000394725|SIAH1;nc|ENSG00000196470|Q8IUQ4-2|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 ENSG00000196470|ENST00000394725|SIAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.801025390625 2 570.800414 1139.58628 2.5696 0.0014667 1.7153 0.0009791 4.2849 0.0024458 570.7990992588664 96.939 0.45061 96.932 96.587 97.038 -0.007019 32 16 3 0 0 0 0.037795 1 53814 53814 64.236 28.109 1 6986200 68352 9825 45462 46483 79837 79837 0.022065924118805924 VFDTTNKKF 9 Unmodified _VFDTTNKKF_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7946166992188 2 550.292756 1098.57096 0.39127 0.00021531 0.15316 8.4282E-05 0.54443 0.0002996 550.2923799613993 92.886 0.43966 86.711 86.431 86.871 -6.1757 70 27 4 0 0 0 0.2546 2 61412 61300;61412 20.454 2.3073 1 121960000 + 68353 21121 45463 46484 79838;79839 79839 0.025617256147143053 VFDTTNKKF 9 Unmodified _VFDTTNKKF_ 0 0 0 REV__ENSG00000152464|ENST00000378197|RPP38 REV__ENSG00000152464|ENST00000378197|RPP38 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 550.311767578125 2 550.292756 1098.57096 0.39127 0.00021531 0.15316 8.4282E-05 0.54443 0.0002996 550.2923799613993 92.886 0.43966 86.711 86.431 86.871 -6.1757 70 27 4 0 0 0 0.15672 1 61545 61545 26.884 9.9414 1 121960000 + 68354 21121 45463 46484 79840 79840 0.025617256147143053 VFDVALLDL 9 Unmodified _VFDVALLDL_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;ENST00000489038.5_1_7:33016023-33032371:+|nuORF;ENST00000494374.5_1_7:32997059-33028356:+|nuORF nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7876586914062 2 502.786776 1003.559 1.0625 0.00053422 0.58499 0.00029413 1.6475 0.00082835 502.7868667460804 101.31 0.080719 95.134 95.064 95.144 -6.1757 8 4 2 0 0 0 0.16226 1 67960 67960 26.884 3.7352 1 54525000 68355 3650 45464 46485 79841 79841 0.057361088715197184 VFDVESREL 9 Unmodified _VFDVESREL_ 0 0 0 ENSG00000155876|ENST00000380527|RRAGA;ENSG00000083750|ENST00000374941|RRAGB;nc|ENSG00000083750|Q5VZM2|RRAGB;ENST00000474757.1_1_X:55757854-55777647:+|nuORF;ENST00000498762.1_1_X:55748624-55758085:+|nuORF ENSG00000155876|ENST00000380527|RRAGA ENSG00000155876|ENST00000380527|RRAGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2827758789062 2 547.279846 1092.54514 0.77404 0.00042361 1.729 0.00094627 2.5031 0.0013699 547.2801794880431 47.641 0.36258 47.641 47.405 47.767 0 24 16 2 0 0 0 0.062454 1 26043 26043 41.956 21.084 1 6293200 68356 1371 45465 46486 79842 79842 0.002568313724395921 VFDVIIRCF 9 Carbamidomethyl (C) _VFDVIIRC(Carbamidomethyl (C))F_ VFDVIIRC(1)F VFDVIIRC(96)F 0 1 0 ENSG00000170445|ENST00000504156|HARS1;ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;nc|ENSG00000170445|P12081-4|HARS1 ENSG00000170445|ENST00000504156|HARS1 ENSG00000170445|ENST00000504156|HARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8136596679688 2 584.812802 1167.61105 0.479 0.00028013 0.77226 0.00045162 1.2513 0.00073175 584.8130500740341 79.796 0.48935 79.851 79.602 80.092 0.054977 79 19 6 0 0 0 0.0082485 2 44088 44088;44187 96.285 56.327 1 77782000 68357 7986 45466 46487 79843;79844 79843 780 0.03394949013636506 VFDVIIRCF 9 Carbamidomethyl (C) _VFDVIIRC(Carbamidomethyl (C))F_ VFDVIIRC(1)F VFDVIIRC(89)F 0 1 0 ENSG00000170445|ENST00000504156|HARS1;ENST00000502888.1_1_5:140062654-140070871:-|nuORF;ENST00000518126.5_1_5:140059363-140070889:-|nuORF;nc|ENSG00000170445|P12081-4|HARS1 ENSG00000170445|ENST00000504156|HARS1 ENSG00000170445|ENST00000504156|HARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8121337890625 2 584.812802 1167.61105 1.1987 0.00070103 -0.19183 -0.00011219 1.0069 0.00058884 584.8127039149898 96.379 0.38148 90.203 89.989 90.37 -6.1757 69 22 4 0 0 0 0.0086722 3 63779 63733;63779;63900 88.954 62.07 1 227250000 68358 7986 45466 46487 79845;79846;79847 79846 780 0.03394949013636506 VFDVLDGEEM 10 Oxidation (M) _VFDVLDGEEM(Oxidation (M))_ VFDVLDGEEM(1) VFDVLDGEEM(75) 0 0 1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.2549438476562 2 585.255179 1168.49581 0.93325 0.00054619 -0.75559 -0.00044221 0.17765 0.00010397 585.2553751133966 69.04 0.53912 62.865 62.654 63.193 -6.1757 57 29 3 0 0 0 0.020813 2 45164 45036;45164 74.929 50.908 1 30731000 68359 4910 45467 46488 79848;79849 79849 893 -0.08170244698681017 VFDVLDGEEM 10 Unmodified _VFDVLDGEEM_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2568359375 2 577.257722 1152.50089 0.47408 0.00027366 -0.48341 -0.00027905 -0.0093332 -5.3877E-06 577.2575517692939 82.368 0.48766 76.193 75.97 76.458 -6.1757 64 26 3 0 0 0 0.33553 2 54193 54067;54193 25.399 18.11 1 33022000 68360 4910 45467 46489 79850;79851 79851 -0.06925940836049449 VFDVMCWYE 9 Unmodified _VFDVMCWYE_ 0 0 0 REV__ENSG00000164080|ENST00000684192|RAD54L2 REV__ENSG00000164080|ENST00000684192|RAD54L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2470092773438 2 596.246103 1190.47765 0.37523 0.00022373 -1.398 -0.00083353 -1.0227 -0.0006098 596.2447846838165 59.912 0.40437 59.912 59.773 60.178 0 36 18 3 0 0 0 0.19361 1 33361 33361 32.305 17.057 1 4054500 + 68361 21863 45468 46490 79852 79852 -0.10996658154363104 VFDVNPLFPH 10 Unmodified _VFDVNPLFPH_ 0 0 0 REV__ENSG00000109181|ENST00000265403|UGT2B10 REV__ENSG00000109181|ENST00000265403|UGT2B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8099365234375 2 592.808574 1183.60259 0.02235 1.3249E-05 1.471 0.00087201 1.4933 0.00088526 592.8094865198701 76.188 0.3343 76.236 76.086 76.421 0.047943 23 13 2 0 0 0 0.38092 1 42028 42028 22.736 8.8302 1 10020000 + 68362 18649 45469 46491 79853 79853 0.01813718368634909 VFDVSHNAV 9 Unmodified _VFDVSHNAV_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2487182617188 2 494.248349 986.482145 0.45821 0.00022647 0.38787 0.0001917 0.84608 0.00041817 494.2480154787975 36.883 0.22356 36.883 36.754 36.977 0 22 10 3 0 0 0 0.0090524 1 19566 19566 85.642 43.547 1 3270100 68363 2983 45470 46492 79854 79854 -0.011636896249569872 VFDVSHNAV 9 Unmodified _VFDVSHNAV_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2486267089844 2 494.248349 986.482145 1.0101 0.00049922 0.34376 0.0001699 1.3538 0.00066912 494.2484264340971 42.512 0.34607 37.827 37.648 37.994 -4.6846 33 23 2 0 0 0 0.029718 1 25748 25748 55.503 15.545 1 14207000 68364 2983 45470 46492 79855 79855 -0.011636896249569872 VFDVSHNAV 9 Unmodified _VFDVSHNAV_ 0 0 0 ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A ENSG00000113615|ENST00000398844|SEC24A ENSG00000113615|ENST00000398844|SEC24A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.248349 986.482145 -0.058339 -2.8834E-05 0.11039 5.4559E-05 0.052049 2.5725E-05 494.2484100842178 37.139 0.19154 36.889 36.751 36.942 -0.2497 0.0029566 -0.00010819 NaN 85.642 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1019600 68365 2983 45470 46492 -0.011636896249569872 VFDVTAPNTF 10 Unmodified _VFDVTAPNTF_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7772827148438 2 555.776939 1109.53933 0.65433 0.00036366 -0.84421 -0.00046919 -0.18988 -0.00010553 555.7770511585334 68.456 0.58756 67.975 67.764 68.352 -0.48071 63 26 5 0 0 0 0.2178 1 37453 37453 32.305 20.665 1 9781000 68366 1169 45471 46493 79856 79856 -0.011062671392664924 VFDVTAPNTF 10 Unmodified _VFDVTAPNTF_ 0 0 0 ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A ENSG00000075785|ENST00000265062|RAB7A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.776939 1109.53933 0.57546 0.00031983 0.59377 0.00033 1.1692 0.00064983 555.7768604576654 67.979 0.27295 68.004 67.815 68.088 0.025154 0.014473 0.0010345 NaN 32.305 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2331400 68367 1169 45471 46493 -0.011062671392664924 VFDVTERTAL 10 Unmodified _VFDVTERTAL_ 0 0 0 nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENSG00000187531|ENST00000328666|SIRT7;ENST00000574992.5_1_17:79871648-79872373:-|nuORF;ENST00000572976.5_1_17:79870294-79872532:-|nuORF;ENST00000576156.1_1_17:79871830-79872373:-|nuORF nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENST00000576156.1_1_17:79871830-79872373:-|nuORF nc|ENSG00000187531|Q9NRC8-3|SIRT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7752075195312 2 575.808771 1149.60299 0.37629 0.00021667 -0.88772 -0.00051115 -0.51142 -0.00029448 575.8082754286638 51.066 0.22073 50.653 50.518 50.738 -0.41351 24 10 3 0 0 0 0.21983 1 27471 27471 24.882 6.5085 1 3941100 68368 9560;15520 45472 46494 79857 79857 0.034170932978668134 VFDWIEANL 9 Unmodified _VFDWIEANL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.779541015625 2 553.779482 1105.54441 0.58554 0.00032426 0.03238 1.7932E-05 0.61792 0.00034219 553.7794165271562 93.957 0.36691 93.537 93.325 93.692 -0.42044 37 16 3 0 0 0 0.070838 2 51313 51262;51313 39.957 15.238 1 2539400 68369 3070;16132 45473 46495 79858;79859 79859 -0.004139632766509749 VFDWIEANL 9 Unmodified _VFDWIEANL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.7803344726562 2 553.779482 1105.54441 1.9658 0.0010886 -0.05816 -3.2208E-05 1.9077 0.0010564 553.7793119005926 93.494 0.44298 93.517 93.327 93.77 0.02298 47 17 4 0 0 0 0.095405 1 51963 51963 34.102 1.797 1 9333600 68370 3070;16132 45473 46495 79860 79860 -0.004139632766509749 VFDWIEANL 9 Unmodified _VFDWIEANL_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;ENST00000460829.5_1_3:184046782-184052693:+|nuORF;ENST00000478291.1_1_3:184049262-184049734:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7800903320312 2 553.779482 1105.54441 0.89547 0.00049589 0.24872 0.00013774 1.1442 0.00063363 553.7794668493447 99.964 0.18088 93.789 93.703 93.884 -6.1757 37 12 4 0 0 0 0.16226 1 66728 66728 26.884 6.43 1 235540000 68371 3070;16132 45473 46495 79861 79861 -0.004139632766509749 VFDYFEEYF 9 Unmodified _VFDYFEEYF_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.1824340820312 3 420.181612 1257.52301 0.69467 0.00029189 -0.76073 -0.00031964 -0.066059 -2.7757E-05 420.1813577804222 73.75 0.27609 73.274 73.118 73.394 -0.47588 19 12 2 0 0 0 0.53557 1 40354 40354 5.2969 1.7098 1 1477700 68372 5107 45474 46496 79862 79862 -0.09545393096004773 VFDYFEEYF 9 Unmodified _VFDYFEEYF_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 420.181612 1257.52301 0.3909 0.00016425 0.42179 0.00017723 0.81269 0.00034148 420.1814436409649 73.221 0.14487 73.221 73.126 73.271 0 -0.026877 0.0010708 NaN 5.2969 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 696810 68373 5107 45474 46496 -0.09545393096004773 VFDYSINSV 9 Unmodified _VFDYSINSV_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2549438476562 2 522.25584 1042.49713 0.38128 0.00019913 0.26911 0.00014055 0.65039 0.00033967 522.2561898641228 61.696 0.22709 61.696 61.548 61.775 0 20 9 3 0 0 0 0.12841 2 34368 34359;34368 30.225 16.319 1 3299900 68374 4276 45475 46497 79863;79864 79864 -0.022422425476179342 VFDYSINSV 9 Unmodified _VFDYSINSV_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2557983398438 2 522.25584 1042.49713 0.63392 0.00033107 0.0027394 1.4306E-06 0.63666 0.0003325 522.2557817498803 62.331 0.37956 61.843 61.66 62.04 -0.48764 39 17 3 0 0 0 0.042911 2 33913 33913;34021 48.346 21.462 1 6035600 68375 4276 45475 46497 79865;79866 79865 -0.022422425476179342 VFDYSINSV 9 Unmodified _VFDYSINSV_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65733963-65734484:+|nuORF ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2565307617188 2 522.25584 1042.49713 0.77855 0.0004066 1.273 0.00066484 2.0516 0.0010714 522.2565220634375 69.76 0.38544 63.584 63.377 63.763 -6.1757 30 20 2 0 0 0 0.16226 1 45557 45557 26.884 9.9414 1 39115000 68376 4276 45475 46497 79867 79867 -0.022422425476179342 VFECEVANPD 10 Unmodified _VFECEVANPD_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8320007324219 3 374.830585 1121.46993 0.3017 0.00011309 0.68704 0.00025752 0.98874 0.00037061 374.8308495105554 53.154 0.32391 53.154 53.003 53.327 0 37 14 4 0 0 0 0.65282 1 29428 29428 4.7159 0.77152 1 6083000 68377 6400;16288 45476 46498 79868 79868 -0.08595094150291516 VFECEVANPD 10 Unmodified _VFECEVANPD_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.830585 1121.46993 0.3017 0.00011309 0.68704 0.00025752 0.98874 0.00037061 374.8308495105554 53.154 0.32391 53.154 53.003 53.327 0 -0.10685 -4.5913E-05 NaN 4.7159 37 14 4 NaN NaN NaN NaN 0 NaN NaN 0 6083000 68378 6400;16288 45476 46498 -0.08595094150291516 VFECEVANPD 10 Unmodified _VFECEVANPD_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 374.830585 1121.46993 0.44285 0.000166 1.152 0.0004318 1.5948 0.00059779 375.1655569824531 53.834 0.12203 53.368 53.265 53.387 -0.46664 0.10685 0.0004769 NaN 4.7159 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 766100 68379 6400;16288 45476 46498 -0.08595094150291516 VFEDFIYWSDR 11 Unmodified _VFEDFIYWSDR_ 0 0 0 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.8981323242188 3 492.897987 1475.67213 -0.73023 -0.00035993 0.092315 4.5502E-05 -0.63791 -0.00031443 492.8982173899063 30.332 0.26158 30.332 30.181 30.443 0 31 12 4 0 0 0 0.72478 1 15741 15741 1.9275 0.47239 1 4668800 68380 3705 45477 46499 79869 79869 -0.04667867473267506 VFEEAFFSF 9 Unmodified _VFEEAFFSF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;ENSG00000004939|ENST00000262418|SLC4A1;SLC4A1|p.G699Afs*11|1|0.16|ENSG00000004939|chr17:44253333-44253333|C/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.7622680664062 2 561.760758 1121.50696 4.6814 0.0026298 -0.29439 -0.00016538 4.387 0.0024645 561.7603713642438 98.914 0.1703 98.886 98.804 98.975 -0.028282 12 5 3 0 0 0 0.14602 1 54958 54958 28.487 10.352 1 2031700 68381 7258;30165;291 45478 46500 79870 79870 -0.04893054542230857 VFEEAFFSF 9 Unmodified _VFEEAFFSF_ 0 0 0 nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;ENSG00000004939|ENST00000262418|SLC4A1;SLC4A1|p.G699Afs*11|1|0.16|ENSG00000004939|chr17:44253333-44253333|C/-|frameshift_variant;nc|ENSG00000004939|P02730-2|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2;SLC4A2|p.H1140Qfs*80|1|0.09|ENSG00000164889|chr7:151075722-151075723|-/A|frameshift_variant;ENSG00000004939|ENST00000262418|SLC4A1 nc|ENSG00000164889|P04920-2|SLC4A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7619018554688 2 561.760758 1121.50696 1.9094 0.0010726 -0.16052 -9.0175E-05 1.7488 0.00098243 561.7605774014905 100.86 0.11098 94.686 94.623 94.734 -6.1757 14 6 3 0 0 0 0.095405 1 67570 67570 34.102 23.279 1 39336000 68382 7258;30165;291 45478 46500 79871 79871 -0.04893054542230857 VFEKTDTKF 9 Unmodified _VFEKTDTKF_ 0 0 0 REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.793212890625 2 557.792589 1113.57063 0.85541 0.00047714 0.12927 7.2108E-05 0.98468 0.00054925 557.7924636036122 49.421 0.37869 49.029 48.82 49.198 -0.3923 59 18 4 0 0 0 0.39143 1 26618 26618 18.146 18.146 1 32893000 + 68383 20789 45479 46501 79872 79872 0.01838305894852965 VFEKTDTKF 9 Unmodified _VFEKTDTKF_ 0 0 0 REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF REV__ENST00000510006.5_1_5:102343180-102364608:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7931518554688 2 557.792589 1113.57063 0.57225 0.00031919 1.1373 0.0006344 1.7096 0.0009536 557.7931997655475 49.034 0.28743 48.99 48.847 49.134 -0.043694 30 13 3 0 0 0 0.37578 1 26480 26480 19.257 1.1106 1 3962100 + 68384 20789 45479 46501 79873 79873 0.01838305894852965 VFELCACGF 9 Unmodified _VFELCACGF_ 0 0 0 REV__ENST00000373218.4_1_10:72183004-72183088:+|nuORF REV__ENST00000373218.4_1_10:72183004-72183088:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.7165222167969 2 494.716981 987.41941 NaN NaN NaN NaN NaN NaN NaN 16.451 1 13.894 13.394 14.394 -2.557 0 0 0 0.82015 1 8522 8522 5.2307 0 1 + 68385 26136 45480 46502 79874 79874 -0.07480295008997473 VFELRAVKL 9 Unmodified _VFELRAVKL_ 0 0 0 REV__ENST00000564621.1_1_15:74754385-74771599:+|nuORF REV__ENST00000564621.1_1_15:74754385-74771599:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8943176269531 3 358.893848 1073.65972 0.91714 0.00032915 0.32137 0.00011534 1.2385 0.00044449 358.89381774051037 24.166 0.36156 21.338 21.107 21.469 -2.8273 56 19 4 0 0 0 0.2324 1 13065 13065 20.415 0 1 24657000 + 68386 28898 45481 46503 79875 79875 0.12583185645030426 VFENTVATVMA 11 Unmodified _VFENTVATVMA_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.2987670898438 2 591.297181 1180.57981 NaN NaN NaN NaN NaN NaN NaN 41.508 1 41.508 41.008 42.008 0 0 0 0 0.51453 1 22394 22394 24.021 4.7636 1 68387 1569 45482 46504 79876 79876 -0.003256688111150652 VFFDEANKQVF 11 Unmodified _VFFDEANKQVF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000587153.1_1_18:21083537-21084412:+|nuORF ENSG00000141452|ENST00000269221|RMC1 ENSG00000141452|ENST00000269221|RMC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 672.3348999023438 2 672.335153 1342.65575 NaN NaN NaN NaN NaN NaN NaN 62.77 1 62.283 61.783 62.783 -0.48617 0 0 0 0.37978 1 34218 34218 29.082 2.8134 1 68388 5335 45483 46505 79877 79877 -0.001869486393616171 VFFEVSPVSF 10 Unmodified _VFFEVSPVSF_ 0 0 0 nc|ENSG00000087263|Q8N543-2|OGFOD1;ENSG00000087263|ENST00000566157|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 nc|ENSG00000087263|Q8N543-2|OGFOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7980346679688 2 579.297507 1156.58046 0.40155 0.00023262 0.91156 0.00052806 1.3131 0.00076068 579.7991497091056 97.002 0.17432 96.697 96.605 96.78 -0.30472 11 7 2 0 0 0 0.60623 1 52966 52966 10.824 3.5347 1 345460 68389 1462 45484 46506 79878 79878 0.0084349390024272 VFFFCFCPF 9 Unmodified _VFFFCFCPF_ 0 0 0 REV__ENST00000487509.6_1_16:31199536-31202756:+|nuORF REV__ENST00000487509.6_1_16:31199536-31202756:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7511596679688 2 578.753367 1155.49218 NaN NaN NaN NaN NaN NaN NaN 72.562 1 72.562 72.062 73.062 0 0 0 0 0.82015 1 40401 40401 5.2307 1.2863 1 + 68390 27828 45485 46507 79879 79879 -0.07934541215581703 VFFFFLGP 8 Unmodified _VFFFFLGP_ 0 0 0 ENST00000368173.7_1_1:158066090-158066210:+|nuORF ENST00000368173.7_1_1:158066090-158066210:+|nuORF ENST00000368173.7_1_1:158066090-158066210:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2642517089844 2 487.262739 972.510926 NaN NaN NaN NaN NaN NaN NaN 21.536 1 21.536 21.036 22.036 0 0 0 0 0.9185 1 10904 10904 17.087 2.5049 1 68391 12257 45486 46508 79880 79880 0.023570797421484713 VFFFGSDPDE 10 Unmodified _VFFFGSDPDE_ 0 0 0 REV__ENSG00000198198|ENST00000634258|SZT2 REV__ENSG00000198198|ENST00000634258|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2526245117188 2 580.250754 1158.48696 NaN NaN NaN NaN NaN NaN NaN 80.689 1 80.689 80.189 81.189 0 0 0 0 0.98692 1 44799 44799 0 0 1 + 68392 24000 45487 46509 79881 79881 -0.08594850272857002 VFFFVCFVF 9 Unmodified _VFFFVCFVF_ 0 0 0 ENST00000290075.10_1_8:23423868-23424183:+|nuORF ENST00000290075.10_1_8:23423868-23424183:+|nuORF ENST00000290075.10_1_8:23423868-23424183:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7908935546875 2 577.790807 1153.56706 NaN NaN NaN NaN NaN NaN NaN 61.973 1 61.485 60.985 61.985 -0.48764 0 0 0 0.38239 1 33756 33756 20.871 0 1 68393 11459 45488 46510 79882 79882 -0.0035803541268251138 VFFFYPLDF 9 Unmodified _VFFFYPLDF_ 0 0 0 ENSG00000123131|ENST00000379341|PRDX4;ENSG00000117450|ENST00000319248|PRDX1 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 597.2909545898438 2 597.797143 1193.57973 0.56119 0.00033548 -0.95196 -0.00056908 -0.39077 -0.0002336 597.7972730902948 102.43 0.073929 96.259 96.218 96.292 -6.1757 15 7 3 0 0 0 0.097209 1 68737 68737 38.151 24.643 1 5623100 68394 3683 45489 46511 79883 79883 -0.009313007488117364 VFFKEIEGIF 10 Unmodified _VFFKEIEGIF_ 0 0 0 nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8333740234375 2 614.834257 1227.65396 NaN NaN NaN NaN NaN NaN NaN 100.47 1 100.43 99.933 100.93 -0.040649 0 0 0 0.92825 1 55813 55813 6.7232 0 1 68395 6386 45490 46512 79884 79884 0.04924042342713619 VFFKELIQEF 10 Unmodified _VFFKELIQEF_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 650.3536376953125 2 650.352814 1298.69108 0.3878 0.00025221 1.2101 0.00078701 1.5979 0.0010392 650.3532694933102 88.54 0.1564 88.035 87.912 88.068 -0.50423 12 6 2 0 0 0 0.69385 1 48394 48394 6.7232 2.3939 1 412530 68396 5345 45491 46513 79885 79885 0.05367713888472281 VFFKELIQEF 10 Unmodified _VFFKELIQEF_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.35302734375 2 650.352814 1298.69108 0.26638 0.00017324 0.61976 0.00040306 0.88614 0.0005763 650.35308154817 87.914 0.25534 87.968 87.818 88.073 0.053345 23 10 3 0 0 0 5.0622E-05 1 48883 48883 148.27 100.52 1 31106000 68397 5345 45491 46513 79886 79886 0.05367713888472281 VFFKGFKW 8 Unmodified _VFFKGFKW_ 0 0 0 ENSG00000119013|ENST00000237889|NDUFB3 ENSG00000119013|ENST00000237889|NDUFB3 ENSG00000119013|ENST00000237889|NDUFB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5323181152344 3 353.532251 1057.57492 0.78563 0.00027775 0.54964 0.00019431 1.3353 0.00047206 353.5324518595601 93.124 0.32942 86.949 86.77 87.1 -6.1757 61 22 4 0 0 0 0.55032 1 61557 61557 24.021 1.2843 1 174780000 68398 3409 45492 46514 79887 79887 0.048438598990969695 VFFKGFKWGF 10 Unmodified _VFFKGFKWGF_ 0 0 0 ENSG00000119013|ENST00000237889|NDUFB3 ENSG00000119013|ENST00000237889|NDUFB3 ENSG00000119013|ENST00000237889|NDUFB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.5628967285156 3 421.56221 1261.6648 0.59017 0.00024879 -0.090904 -3.8322E-05 0.49926 0.00021047 421.5621800103232 98.754 0.09407 92.579 92.508 92.602 -6.1757 9 6 2 0 0 0 0.17253 1 65566 65566 37.075 11.077 1 35417000 68399 3409 45493 46515 79888 79888 0.04443489507639242 VFFLDVPCD 9 Unmodified _VFFLDVPCD_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.16943359375 3 352.168649 1053.48412 2.0766 0.00073132 -0.60617 -0.00021347 1.4705 0.00051785 352.16843814030534 95.727 0.38222 95.731 95.51 95.892 0.004158 36 14 3 0 0 0 0.41742 1 53171 53171 11.495 0.67078 1 2881000 + 68400 20562 45494 46516 79889 79889 -0.04048396931352727 VFFLDVPCD 9 Unmodified _VFFLDVPCD_ 0 0 0 REV__ENSG00000142156|ENST00000361866|COL6A1 REV__ENSG00000142156|ENST00000361866|COL6A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.2842712402344 3 352.168649 1053.48412 2.0766 0.00073132 -0.60617 -0.00021347 1.4705 0.00051785 352.16843814030534 95.727 0.38222 95.731 95.51 95.892 0.004158 36 14 3 0 0 0 0.21834 1 53091 53091 0.96228 0 1 2881000 + 68401 20562 45494 46516 79890 79890 -0.04048396931352727 VFFLLLLL 8 Unmodified _VFFLLLLL_ 0 0 0 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 ENSG00000162104|ENST00000294016|ADCY9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.32666015625 2 489.32534 976.636126 NaN NaN NaN NaN NaN NaN NaN 13.226 1 13.236 12.736 13.736 0.0096512 0 0 0 0.97444 1 6522 6522 0 0 1 68402 6835 45495 46517 79891 79891 0.14687371878540034 VFFNKLAF 8 Unmodified _VFFNKLAF_ 0 0 0 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 nc|ENSG00000174038|Q5VYM1-3|SPATA31G1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.2229919433594 2 493.278921 984.543289 0.78102 0.00038526 -1.7995 -0.00088767 -1.0185 -0.00050241 493.277769588051 42.08 0.30806 37.396 37.2 37.508 -4.6846 40 18 3 0 0 0 8.7369 1 25257 25257 11.114 4.3913 1 11155000 68403 8387 45496 46518 79892 79892 0.050398671451375776 VFFNLRHLL 9 Unmodified _VFFNLRHLL_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.2977905273438 2 579.842751 1157.67095 0.95201 0.00055202 2.961 0.0017169 3.913 0.0022689 579.844063255365 100.5 0.18901 94.324 94.215 94.404 -6.1757 22 11 3 0 0 0 0.203 1 67151 67151 9.3474 0 1 23444000 + 68404 28032 45497 46519 79893 79893 0.09842007739166547 VFFNMGIDF 9 Unmodified _VFFNMGIDF_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MSMS AL20221201_MKP_PDAC_01 4 364.1745300292969 3 363.840644 1088.5001 NaN NaN NaN NaN NaN NaN NaN 47.1 1 42.019 41.519 42.519 -5.0805 0 0 0 0.82396 1 29198 29198 2.7352 0 1 68405 3477 45498 46520 79894 79894 -0.040606906944731236 VFFNQYIE 8 Unmodified _VFFNQYIE_ 0 0 0 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 REV__nc|ENSG00000109762|Q9H3E2-2|SNX25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.25927734375 2 530.260925 1058.5073 0.73795 0.00039131 -0.99411 -0.00052714 -0.25616 -0.00013583 530.2602768764465 49.912 0.40866 49.52 49.218 49.627 -0.3923 73 20 4 0 0 0 0.61462 1 26712 26712 24.674 0.65332 1 39089000 + 68406 18670 45499 46521 79895 79895 -0.019616348223735258 VFFRRQEL 8 Unmodified _VFFRRQEL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8077392578125 2 547.808908 1093.60326 -0.029141 -1.5964E-05 0.56665 0.00031042 0.53751 0.00029445 547.809151875507 32.978 0.40067 33.008 32.763 33.164 0.029743 40 17 3 0 0 0 0.60622 2 17264 17264;17368 24.674 10.768 1 7649000 68407 8479 45500 46522 79896;79897 79896 0.06020557808369631 VFFRRQEL 8 Unmodified _VFFRRQEL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.80908203125 2 547.808908 1093.60326 1.0292 0.0005638 -0.97115 -0.00053201 0.058042 3.1796E-05 547.8086183214399 36.961 0.58393 32.677 32.472 33.056 -4.2835 81 35 3 0 0 0 0.48583 1 21581 21581 44.407 10.22 1 68041000 68408 8479 45500 46522 79898 79898 0.06020557808369631 VFFRRQEL 8 Unmodified _VFFRRQEL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR;ATR|p.V1328Efs*35|1|0.12|ENSG00000175054|chr3:142524125-142524162|CAAAAGCACTGTCACCAACTGTGAGATAATAGGTTCTA/-|frameshift_variant nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5420837402344 3 365.541697 1093.60326 1.736 0.00063456 -0.34507 -0.00012614 1.3909 0.00050843 365.5415355295555 36.956 0.80777 32.672 32.388 33.196 -4.2835 155 48 5 0 0 0 0.63706 1 21817 21817 22.736 1.1461 1 357090000 68409 8479 45500 46522 79899 79899 0.06020557808369631 VFFSDLPNSL 10 Unmodified _VFFSDLPNSL_ 0 0 0 nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2 nc|ENSG00000166762|Q96P56-3|CATSPER2 nc|ENSG00000166762|Q96P56-3|CATSPER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.793212890625 2 569.792589 1137.57063 0.6098 0.00034746 0.15539 8.8537E-05 0.76518 0.000436 569.7925108087891 89.789 0.43231 89.288 89.102 89.534 -0.50172 49 21 3 0 0 0 0.66569 1 49036 49036 6.7232 0 1 1949600 68410 7528 45501 46523 79900 79900 0.0073430589486633835 VFFVMTCQPL 10 Unmodified _VFFVMTCQPL_ 0 0 0 ENST00000467004.5_1_7:6841110-6844713:-|nuORF ENST00000467004.5_1_7:6841110-6844713:-|nuORF ENST00000467004.5_1_7:6841110-6844713:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.345947265625 2 592.795763 1183.57697 0.7197 0.00042663 0.702 0.00041614 1.4217 0.00084278 592.7959868721246 79.051 0.34615 72.876 72.68 73.026 -6.1757 31 18 2 0 0 0 0.22667 1 51783 51783 10.824 5.5933 1 9093900 68411 13767 45502 46524 79901 79901 -0.007472154696188227 VFFVPMMGLSL 11 Unmodified _VFFVPMMGLSL_ 0 0 0 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 ENSG00000184698|ENST00000642046|OR51M1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2185363769531 3 414.220468 1239.63957 NaN NaN NaN NaN NaN NaN NaN 16.246 1 16.251 15.751 16.751 0.0050564 0 0 0 0.93893 1 8137 8137 1.3296 0.21989 1 68412 9285 45503 46525 79902 79902 0.029339305985786268 VFFWLLFNV 9 Unmodified _VFFWLLFNV_ 0 0 0 REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF REV__ENST00000367537.7_2_1:183523118-183523304:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.5371704101562 3 395.554944 1183.643 0.0021894 8.6602E-07 -1.0041 -0.00039716 -1.0019 -0.0003963 395.55467403935944 21.599 0.38166 21.613 21.411 21.793 0.013796 102 44 3 0 0 0 0.61256 1 10955 10955 0.26902 0 1 9219700 + 68413 25989 45504 46526 79903 79903 0.058526847590883335 VFGFFKKW 8 Unmodified _VFGFFKKW_ 0 0 0 REV__RHOV|p.C234G|1|0.1|ENSG00000104140|chr15:40873069-40873069|A/C|missense_variant REV__RHOV|p.C234G|1|0.1|ENSG00000104140|chr15:40873069-40873069|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5325622558594 3 353.532251 1057.57492 0.5094 0.00018009 0.29234 0.00010335 0.80173 0.00028344 353.5323270154911 64.832 0.32067 64.832 64.677 64.997 7.6294E-06 39 15 3 0 0 0 0.55032 1 35482 35482 24.021 0 1 12529000 + 68414 30091 45505 46527 79904 79904 0.048438598990969695 VFGFFKKW 8 Unmodified _VFGFFKKW_ 0 0 0 REV__RHOV|p.C234G|1|0.1|ENSG00000104140|chr15:40873069-40873069|A/C|missense_variant REV__RHOV|p.C234G|1|0.1|ENSG00000104140|chr15:40873069-40873069|A/C|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5326843261719 3 353.532251 1057.57492 0.78563 0.00027775 0.54964 0.00019431 1.3353 0.00047206 353.5324518595601 93.124 0.32942 86.949 86.77 87.1 -6.1757 61 22 4 0 0 0 0.63229 1 61691 61691 18.146 0 1 174780000 + 68415 30091 45505 46527 79905 79905 0.048438598990969695 VFGKSAYLF 9 Unmodified _VFGKSAYLF_ 0 0 0 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 ENSG00000165650|ENST00000334464|PDZD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2813110351562 2 516.28166 1030.54877 0.40302 0.00020807 -0.77258 -0.00039887 -0.36956 -0.0001908 516.2813134897378 61.87 0.23557 61.838 61.691 61.926 -0.032787 19 11 2 0 0 0 0.1773 1 33797 33797 25.399 7.2643 1 5437300 68416 7368 45506 46528 79906 79906 0.03471545936940856 VFGQGWSSCCP 11 Unmodified _VFGQGWSSCCP_ 0 0 0 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 ENSG00000124788|ENST00000436367|ATXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.7401733398438 2 585.738976 1169.4634 0.98914 0.00057938 -0.8744 -0.00051217 0.11474 6.7206E-05 585.7387029299825 41.991 0.29729 37.307 37.143 37.44 -4.6846 40 18 3 0 0 0 0.5229 1 25263 25263 15.248 3.6082 1 10914000 68417 3819 45507 46529 79907 79907 -0.11455310582664424 VFGTWVFIF 9 Unmodified _VFGTWVFIF_ 0 0 0 REV__ENST00000409645.5_1_2:135209453-135209546:+|nuORF REV__ENST00000409645.5_1_2:135209453-135209546:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2973022460938 2 558.299853 1114.58515 1.3792 0.00077 -3.6837 -0.0020566 -2.3045 -0.0012866 558.2968025587066 102.65 0.066917 96.478 96.453 96.52 -6.1757 22 15 2 0 0 0 0.03327 1 68882 68882 53.576 21.27 1 5168200 + 68418 26697 45508 46530 79908 79908 0.032444228336544256 VFGYHGYTF 9 Unmodified _VFGYHGYTF_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.7518920898438 2 545.753267 1089.49198 0.29076 0.00015868 -0.05126 -2.7975E-05 0.2395 0.00013071 545.7530633573156 59.49 0.30156 59.437 59.273 59.574 -0.053059 51 15 4 0 0 0 0.0094915 2 32375 32375;32481 81.864 57.19 1 28454000 68419 5403 45509 46531 79909;79910 79909 -0.049185016195679054 VFGYHGYTF 9 Unmodified _VFGYHGYTF_ 0 0 0 nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 nc|ENSG00000142230|Q9UBE0-2|SAE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.3006591796875 2 545.753267 1089.49198 0.62067 0.00033874 0.95442 0.00052088 1.5751 0.00085961 545.7538198810204 67.452 0.92682 61.276 60.73 61.657 -6.1757 80 51 2 0 0 0 0.11012 1 43901 43901 28.487 14.581 1 17633000 68420 5403 45509 46531 79911 79911 -0.049185016195679054 VFHATAFEL 9 Unmodified _VFHATAFEL_ 0 0 0 ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34319275-34319650:+|nuORF ENSG00000149257|ENST00000358171|SERPINH1 ENSG00000149257|ENST00000358171|SERPINH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7694702148438 2 517.768917 1033.52328 0.4036 0.00020897 -0.8989 -0.00046542 -0.4953 -0.00025645 517.7684949073328 62.916 0.17667 62.43 62.365 62.542 -0.48617 15 8 2 0 0 0 0.087258 1 34313 34313 36.044 16.605 1 3917700 68421 5995 45510 46532 79912 79912 0.007860714144953818 VFHDQLHTF 9 Unmodified _VFHDQLHTF_ 0 0 0 nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.857177734375 3 381.857574 1142.55089 0.025105 9.5864E-06 -0.38878 -0.00014846 -0.36368 -0.00013887 381.85753861175397 37.917 0.27667 37.646 37.506 37.782 -0.27133 40 13 4 0 0 0 0.042911 1 19926 19926 43.772 28.524 1 12843000 68422 1875 45511 46533 79913 79913 -0.014680253252663533 VFHDQLHTF 9 Unmodified _VFHDQLHTF_ 0 0 0 nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2822265625 2 572.282723 1142.55089 NaN NaN NaN NaN NaN NaN NaN 37.955 1 37.683 37.183 38.183 -0.27133 0 0 0 0.053277 1 19967 19967 56.177 34.43 1 68423 1875 45511 46533 79914 79914 -0.014680253252663533 VFHDQLHTF 9 Unmodified _VFHDQLHTF_ 0 0 0 nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8578186035156 3 381.857574 1142.55089 -0.11649 -4.4482E-05 -0.67054 -0.00025605 -0.78703 -0.00030053 381.85747353148236 37.533 0.19382 37.55 37.46 37.653 0.01704 14 9 2 0 0 0 0.1773 1 19940 19940 23.79 16.688 1 1819100 68424 1875 45511 46533 79915 79915 -0.014680253252663533 VFHDQLHTF 9 Unmodified _VFHDQLHTF_ 0 0 0 nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.8572692871094 3 381.857574 1142.55089 1.2705 0.00048514 -1.0687 -0.00040811 0.20173 7.7034E-05 381.8570463098766 42.38 0.38081 37.695 37.477 37.858 -4.6846 57 25 3 0 0 0 0.08691 2 25657 25522;25657 27.223 10.657 1 38457000 68425 1875 45511 46533 79916;79917 79917 -0.014680253252663533 VFHDQLHTF 9 Unmodified _VFHDQLHTF_ 0 0 0 nc|ENSG00000100784|O75582-2|RPS6KA5;ENSG00000100784|ENST00000614987|RPS6KA5;nc|ENSG00000100784|O75582-3|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 nc|ENSG00000100784|O75582-2|RPS6KA5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.857574 1142.55089 0.0048575 1.8549E-06 -0.70256 -0.00026828 -0.6977 -0.00026642 382.1909753347057 37.599 0.18729 37.599 37.493 37.68 0 -0.02316 -9.6856E-05 NaN 43.772 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1605200 68426 1875 45511 46533 -0.014680253252663533 VFHHINNI 8 Unmodified _VFHHINNI_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2673645019531 2 497.266876 992.519199 0.38563 0.00019176 -0.094512 -4.6998E-05 0.29112 0.00014476 497.2668140961078 68.581 0.40972 68.581 68.33 68.74 0 49 18 3 0 0 0 0.80624 1 38297 38297 2.8892 0 1 3855500 68427 315 45512 46534 79918 79918 0.022640267114638846 VFHIHNESW 9 Unmodified _VFHIHNESW_ 0 0 0 ENSG00000088812|ENST00000262919|ATRN;nc|ENSG00000088812|O75882-2|ATRN;nc|ENSG00000088812|O75882-3|ATRN ENSG00000088812|ENST00000262919|ATRN ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.189208984375 3 390.189324 1167.54614 1.0082 0.00039338 -0.59289 -0.00023134 0.41528 0.00016204 390.189149884856 29.077 0.34344 25.776 25.626 25.969 -3.3016 54 21 3 0 0 0 0.31356 1 16324 16324 16.566 0.41677 1 384660000 68428 1496 45513 46535 79919 79919 -0.03092909468000471 VFHLFHKLL 9 Unmodified _VFHLFHKLL_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2337341308594 3 385.234205 1152.68079 0.60938 0.00023475 -1.5451 -0.00059523 -0.93574 -0.00036048 385.23386093826593 28.846 0.24514 28.784 28.721 28.966 -0.062159 14 10 2 0 0 0 0.38785 1 14929 14929 13.042 2.243 1 3052700 68429 3160 45514 46536 79920 79920 0.11055195744552293 VFHPRQELI 9 Unmodified _VFHPRQELI_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5514526367188 3 380.217102 1137.62948 -0.17882 -6.7991E-05 0.64306 0.0002445 0.46424 0.00017651 380.21730197429366 37.295 0.33538 37.023 36.846 37.181 -0.27133 29 13 3 0 0 0 0.43515 1 19586 19586 10.8 2.644 1 5176000 68430 3627 45515 46537 79921 79921 0.06616826979848156 VFHPRQELI 9 Unmodified _VFHPRQELI_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2177429199219 3 380.217102 1137.62948 -0.23812 -9.0538E-05 0.72712 0.00027646 0.489 0.00018592 380.217541718578 36.964 0.30243 36.986 36.767 37.07 0.021545 19 13 2 0 0 0 0.43515 1 19608 19608 10.8 4.1691 1 2311200 68431 3627 45515 46537 79922 79922 0.06616826979848156 VFHPRQELI 9 Unmodified _VFHPRQELI_ 0 0 0 ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA ENSG00000122218|ENST00000241704|COPA ENSG00000122218|ENST00000241704|COPA MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2184143066406 3 380.217102 1137.62948 2.1278 0.00080902 0.010936 4.158E-06 2.1387 0.00081318 380.21739988245247 41.795 0.39484 37.188 36.999 37.394 -4.6079 47 24 3 0 0 0 0.37578 1 25232 25232 13.615 7.423 1 16785000 68432 3627 45515 46537 79923 79923 0.06616826979848156 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8056030273438 2 594.806031 1187.59751 -0.0048483 -2.8838E-06 -1.3715 -0.00081579 -1.3764 -0.00081868 595.3064069449181 62.266 0.15699 62.266 62.189 62.346 0 14 9 2 0 0 0 0.57893 1 34714 34714 12.241 2.1667 1 1734000 68433 2703 45516 46538 79924 79924 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3063354492188 2 594.806031 1187.59751 0.64792 0.00038539 -1.0805 -0.00064268 -0.43256 -0.00025729 594.8053843444227 62.722 0.3225 62.236 62.063 62.385 -0.48617 52 15 5 0 0 0 0.041224 2 34131 34131;34239 62.573 33.491 1 74372000 68434 2703 45516 46538 79925;79926 79925 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8062133789062 2 594.806031 1187.59751 0.15072 8.9652E-05 -0.39256 -0.0002335 -0.24184 -0.00014385 594.8057362150319 62.324 0.2977 62.292 62.14 62.438 -0.032787 32 15 3 0 0 0 0.024115 1 34034 34034 71.922 42.841 1 21295000 68435 2703 45516 46538 79927 79927 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8069458007812 2 594.806031 1187.59751 0.27727 0.00016492 0.52214 0.00031057 0.79941 0.00047549 594.806444177534 68.081 0.54153 61.906 61.601 62.143 -6.1757 54 31 2 0 0 0 0.067957 2 44408 44273;44408 53.833 24.751 1 32306000 68436 2703 45516 46538 79928;79929 79929 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8059692382812 2 594.806031 1187.59751 0.5114 0.00030418 -0.68835 -0.00040944 -0.17696 -0.00010526 594.805465592457 72.842 1.0664 66.666 66.141 67.207 -6.1757 60 53 2 0 0 0 0.095098 3 47942 47668;47823;47942 47.749 17.112 1 15606000 68437 2703 45516 46538 79930;79931;79932 79932 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MSMS AL20221201_MKP_PDAC_01 4 594.806640625 2 594.806031 1187.59751 NaN NaN NaN NaN NaN NaN NaN 71.644 1 65.468 64.968 65.968 -6.1757 0 0 0 0.168 1 46832 46832 45.7 15.063 1 68438 2703 45516 46538 79933 79933 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MSMS AL20221201_MKP_PDAC_01 4 594.8055419921875 2 594.806031 1187.59751 NaN NaN NaN NaN NaN NaN NaN 71.856 1 65.68 65.18 66.18 -6.1757 0 0 0 0.37462 1 46993 46993 32.786 14.413 1 68439 2703 45516 46538 79934 79934 0.011214145060193914 VFHPSQDLVF 10 Unmodified _VFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MSMS AL20221201_MKP_PDAC_01 4 594.8082275390625 2 594.806031 1187.59751 NaN NaN NaN NaN NaN NaN NaN 72.061 1 65.885 65.385 66.385 -6.1757 0 0 0 0.49971 1 47153 47153 26.268 3.5319 1 68440 2703 45516 46538 79935 79935 0.011214145060193914 VFHQNRDLD 9 Unmodified _VFHQNRDLD_ 0 0 0 REV__ENSG00000175820|ENST00000322527|CCDC168 REV__ENSG00000175820|ENST00000322527|CCDC168 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2804565429688 2 572.280712 1142.54687 0.89148 0.00051018 -1.5073 -0.00086259 -0.61581 -0.00035242 572.2794239406217 42.334 0.203 37.649 37.544 37.747 -4.6846 17 12 2 0 0 0 0.10247 1 25549 25549 32.786 5.902 1 11968000 + 68441 22894 45517 46539 79936 79936 -0.018701148189620653 VFHREQAELV 10 Unmodified _VFHREQAELV_ 0 0 0 REV__ENST00000530070.1_1_19:50188189-50188460:+|nuORF REV__ENST00000530070.1_1_19:50188189-50188460:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8877563476562 3 409.887533 1226.64077 NaN NaN NaN NaN NaN NaN NaN 31.865 1 31.865 31.365 32.365 0 0 0 0 0.95103 1 16616 16616 3.0723 0.44103 1 + 68442 28433 45518 46540 79937 79937 0.0365160428332274 VFHRLGRMVYF 11 Unmodified _VFHRLGRMVYF_ 0 0 0 ENST00000508922.5_3_5:52394525-52403022:-|nuORF ENST00000508922.5_3_5:52394525-52403022:-|nuORF ENST00000508922.5_3_5:52394525-52403022:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.5927734375 3 475.592175 1423.7547 NaN NaN NaN NaN NaN NaN NaN 26.76 1 26.76 26.26 27.26 0 0 0 0 0.94148 1 13768 13768 1.4551 0 1 68443 14570 45519 46541 79938 79938 0.059767958445945624 VFHSLNREELQ 11 Unmodified _VFHSLNREELQ_ 0 0 0 ENST00000526600.1_1_11:12961545-12961695:+|nuORF ENST00000526600.1_1_11:12961545-12961695:+|nuORF ENST00000526600.1_1_11:12961545-12961695:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 686.3516235351562 2 686.354408 1370.69426 NaN NaN NaN NaN NaN NaN NaN 96.163 1 96.163 95.663 96.663 0 0 0 0 0.94032 1 53144 53144 2.2828 0.80087 1 68444 14822 45520 46542 79939 79939 0.023743569951875543 VFHSPSSFQT 10 Unmodified _VFHSPSSFQT_ 0 0 0 ENST00000430298.6_1_19:12222347-12224207:+|nuORF ENST00000430298.6_1_19:12222347-12224207:+|nuORF ENST00000430298.6_1_19:12222347-12224207:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7728881835938 2 568.772188 1135.52982 1.2586 0.00071585 -0.59411 -0.00033791 0.66448 0.00037794 568.7717698846882 55.117 0.90459 49.196 48.956 49.861 -5.9211 124 55 4 0 0 0 0.60623 1 35188 35188 10.824 0.024421 1 297270000 68445 13237 45521 46543 79940 79940 -0.03252035424748101 VFIDEIDAI 9 Unmodified _VFIDEIDAI_ 0 0 0 nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555787.1_1_14:90734518-90735894:+|nuORF nc|ENSG00000100764|P62191-2|PSMC1 nc|ENSG00000100764|P62191-2|PSMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7752075195312 2 517.773865 1033.53318 0.31063 0.00016084 0.97638 0.00050554 1.287 0.00066638 517.7746383323786 81.391 0.31961 81.391 81.195 81.515 0 18 13 2 0 0 0 0.37804 1 45160 45160 13.508 2.3934 1 830970 68446 1873 45522 46544 79941 79941 0.017752146292423276 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.300537109375 2 539.300581 1076.58661 -0.33033 -0.00017815 0.047628 2.5686E-05 -0.28271 -0.00015246 539.3006411237346 41.073 0.41645 41.073 40.888 41.304 0 71 25 4 0 0 0 0.0087807 2 22047 22047;22159 106.94 64.846 1 153480000 68447 5989 45523 46545 79942;79943 79942 0.05138012131760661 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3005981445312 2 539.300581 1076.58661 -0.18158 -9.7925E-05 0.34006 0.00018339 0.15848 8.5467E-05 539.3007407791883 41.361 0.35125 41.058 40.887 41.238 -0.30304 61 16 5 0 0 0 0.0033077 2 21849 21849;21958 125.04 60.801 1 168640000 68448 5989 45523 46545 79944;79945 79944 0.05138012131760661 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3010864257812 2 539.300581 1076.58661 0.18544 0.00010001 0.053945 2.9093E-05 0.23939 0.0001291 539.3003523441539 41.043 0.46741 41.042 40.851 41.319 -0.0017929 53 22 5 0 0 0 0.0085386 2 21874 21874;21978 100.09 45.317 1 29859000 68449 5989 45523 46545 79946;79947 79946 0.05138012131760661 VFIDKQTNL 9 Unmodified _VFIDKQTNL_ 0 0 0 nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2 nc|ENSG00000149187|Q92879-5|CELF1 nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.30078125 2 539.300581 1076.58661 0.48463 0.00026136 -0.67884 -0.0003661 -0.19421 -0.00010473 539.3001314462673 46.966 0.51487 41.886 41.664 42.179 -5.0805 186 61 4 0 0 0 0.0089732 3 29138 29004;29138;29269 86.332 44.237 1 672890000 68450 5989 45523 46545 79948;79949;79950 79949 0.05138012131760661 VFIDSGRHYW 10 Unmodified _VFIDSGRHYW_ 0 0 0 ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1 ENSG00000101871|ENST00000317552|MID1 ENSG00000101871|ENST00000317552|MID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.2121276855469 3 427.212128 1278.61456 0.55234 0.00023597 0.41306 0.00017646 0.9654 0.00041243 427.2122937072951 47.79 0.22894 47.752 47.64 47.869 -0.038643 23 10 3 0 0 0 0.0575 1 25751 25751 63.227 42.356 1 3346300 68451 1996 45524 46546 79951 79951 -0.013606648881477668 VFIEGADAETF 11 Unmodified _VFIEGADAETF_ 0 0 0 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 ENSG00000136628|ENST00000366923|EPRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7855834960938 2 599.784961 1197.55537 -0.041873 -2.5115E-05 1.3792 0.00082721 1.3373 0.00080209 599.785801587799 63.99 0.45392 63.99 63.801 64.255 0 46 18 4 0 0 0 0.35243 1 35654 35654 24.021 2.4836 1 8996900 68452 4838 45525 46547 79952 79952 -0.03550605692998943 VFIGNLNTL 9 Unmodified _VFIGNLNTL_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000556181.1_1_14:58987979-58988105:+|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7842712402344 2 495.784567 989.554582 0.34592 0.0001715 -0.19098 -9.4686E-05 0.15494 7.6817E-05 495.784446307514 75.877 0.35902 75.925 75.727 76.086 0.047943 37 15 3 0 0 0 0.027803 1 41824 41824 56.541 8.1954 1 6195400 68453 1609 45526 46548 79953 79953 0.05938644448622199 VFIGNLNTL 9 Unmodified _VFIGNLNTL_ 0 0 0 nc|ENSG00000092199|P07910-3|HNRNPC;nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENST00000556181.1_1_14:58987979-58988105:+|nuORF nc|ENSG00000092199|P07910-3|HNRNPC nc|ENSG00000092199|P07910-3|HNRNPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7848510742188 2 495.784567 989.554582 0.99074 0.00049119 0.08257 4.0937E-05 1.0733 0.00053213 495.7844954914313 83.948 0.4026 77.773 77.508 77.91 -6.1757 38 20 2 0 0 0 0.078417 1 55281 55281 38.151 15.003 1 13756000 68454 1609 45526 46548 79954 79954 0.05938644448622199 VFIHDQKLF 9 Unmodified _VFIHDQKLF_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MSMS AL20221201_MKP_PDAC_01 4 382.8825073242188 3 382.88172 1145.62333 NaN NaN NaN NaN NaN NaN NaN 55.425 1 49.504 49.004 50.004 -5.9211 0 0 0 0.32177 1 35283 35283 22.658 0 1 68455 10833 45527 46549 79955 79955 0.05634308748312833 VFIIPGSVLLW 11 Unmodified _VFIIPGSVLLW_ 0 0 0 nc|ENSG00000141447|Q9BXW6-2|OSBPL1A;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A nc|ENSG00000141447|Q9BXW6-2|OSBPL1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3763427734375 2 622.376092 1242.73763 0.89429 0.00055658 0.74856 0.00046588 1.6428 0.0010225 622.3764159771339 102.49 0.088882 96.317 96.273 96.362 -6.1757 35 13 3 0 0 0 0.043669 1 68769 68769 52.268 21.632 1 13398000 68456 5332 45528 46550 79956 79956 0.12597198510434282 VFIIVPAIF 9 Unmodified _VFIIVPAIF_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.8210144042969 2 509.820421 1017.62629 0.84416 0.00043037 1.0747 0.0005479 1.9188 0.00097827 509.8207986702688 102.36 0.12497 96.186 96.093 96.218 -6.1757 23 8 4 0 0 0 0.047696 1 68694 68694 45.75 17.577 1 21626000 68457 6601 45529 46551 79957 79957 0.11818183873140242 VFIKDLALF 9 Unmodified _VFIKDLALF_ 0 0 0 ENST00000446673.5_1_3:42544163-42573332:+|nuORF;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;ENSG00000114812|ENST00000325123|VIPR1;nc|ENSG00000114812|P32241-2|VIPR1 ENST00000446673.5_1_3:42544163-42573332:+|nuORF ENST00000446673.5_1_3:42544163-42573332:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3211059570312 2 533.320786 1064.62702 0.14046 7.4909E-05 -0.3788 -0.00020202 -0.23834 -0.00012711 533.3207110537612 99.018 0.14259 92.842 92.752 92.894 -6.1757 12 8 2 0 0 0 0.014417 1 65824 65824 69.105 18.25 1 58240000 68458 3066 45530 46552 79958 79958 0.09728978522139187 VFIKRCFTF 9 Carbamidomethyl (C) _VFIKRC(Carbamidomethyl (C))FTF_ VFIKRC(1)FTF VFIKRC(53)FTF 0 1 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5551147460938 3 406.554838 1216.64269 1.1051 0.0004493 -0.52715 -0.00021432 0.57799 0.00023499 406.554675450411 81.187 0.98383 75.011 74.498 75.481 -6.1757 140 55 3 0 0 0 0.033587 2 53016 53016;53398 53.404 38.447 1 43244000 68459 1489 45531 46553 79959;79960 79959 142 0.04302941767559787 VFIKRCFTF 9 Carbamidomethyl (C) _VFIKRC(Carbamidomethyl (C))FTF_ VFIKRC(1)FTF VFIKRC(86)FTF 0 1 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8311767578125 2 609.328619 1216.64269 0.86084 0.00052453 -3.0778 -0.0018754 -2.217 -0.0013509 609.3261303972133 81.284 0.41925 75.108 74.808 75.227 -6.1757 39 24 2 0 0 0 0.0090524 3 53343 53176;53303;53343 85.642 52.486 1 14544000 68460 1489 45531 46553 79961;79962;79963 79963 142 0.04302941767559787 VFIKRCFTF 9 Carbamidomethyl (C) _VFIKRC(Carbamidomethyl (C))FTF_ VFIKRC(1)FTF VFIKRC(48)FTF 0 1 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MSMS AL20221201_MKP_PDAC_01 4 609.3261108398438 2 609.328619 1216.64269 NaN NaN NaN NaN NaN NaN NaN 81.507 1 75.331 74.831 75.831 -6.1757 0 0 0 0.083082 1 53502 53502 47.749 19.254 1 68461 1489 45531 46553 79964 79964 142 0.04302941767559787 VFIKYLPEW 9 Unmodified _VFIKYLPEW_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1 nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8316040039062 2 597.831517 1193.64848 -0.064066 -3.8301E-05 -0.25699 -0.00015363 -0.32105 -0.00019194 597.8314202688363 80.139 0.23886 80.197 79.98 80.218 0.057587 15 10 2 0 0 0 0.013609 1 44259 44259 70.332 41.845 1 12268000 68462 5554;1305 45532 46554 79965 79965 0.059403635508715524 VFIKYLPEW 9 Unmodified _VFIKYLPEW_ 0 0 0 nc|ENSG00000288674|P49810-2|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1 nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000080815|P49768-6|PSEN1 nc|ENSG00000080815|P49768-6|PSEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8321533203125 2 597.831517 1193.64848 0.78371 0.00046853 0.19705 0.0001178 0.98076 0.00058633 597.8316175929795 97.195 0.29401 91.019 90.861 91.155 -6.1757 51 16 4 0 0 0 0.014417 1 64365 64365 69.105 48.69 1 156050000 68463 5554;1305 45532 46554 79966 79966 0.059403635508715524 VFILICCFII 10 Unmodified _VFILICCFII_ 0 0 0 ENSG00000170989|ENST00000305352|S1PR1 ENSG00000170989|ENST00000305352|S1PR1 ENSG00000170989|ENST00000305352|S1PR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2258605957031 3 395.225442 1182.6545 0.27803 0.00010989 -0.018435 -7.286E-06 0.2596 0.0001026 395.225220669165 40.35 0.30088 40.355 40.169 40.47 0.0050583 30 13 3 0 0 0 0.65502 1 21489 21489 4.1895 0 1 4550900 68464 8054 45533 46555 79967 79967 0.07047422466553144 VFINVPTVSF 10 Unmodified _VFINVPTVSF_ 0 0 0 nc|ENSG00000172828|Q6UWW8-2|CES3;ENSG00000172828|ENST00000303334|CES3 nc|ENSG00000172828|Q6UWW8-2|CES3 nc|ENSG00000172828|Q6UWW8-2|CES3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.8140869140625 2 561.813325 1121.6121 0.78854 0.00044301 0.89906 0.0005051 1.6876 0.00094811 561.8138407418265 99.608 0.18382 93.432 93.341 93.525 -6.1757 37 11 4 0 0 0 0.087164 1 66380 66380 68.081 48.824 1 166850000 68465 8260 45534 46556 79968 79968 0.05615486654187407 VFIPFFCL 8 Unmodified _VFIPFFCL_ 0 0 0 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92 REV__chr2:113477199-113482177|50|11.1|0.21|5.7|+|0|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|92 MSMS AL20221201_MKP_PDAC_01 4 493.2648620605469 2 493.264425 984.514297 NaN NaN NaN NaN NaN NaN NaN 63.804 1 57.629 57.129 58.129 -6.1757 0 0 0 0.62523 1 41283 41283 32.454 0 1 + 68466 16793 45535 46557 79969 79969 0.021420065244797115 VFIPGRRVF 9 Unmodified _VFIPGRRVF_ 0 0 0 REV__ENSG00000138031|ENST00000679454|ADCY3 REV__ENSG00000138031|ENST00000679454|ADCY3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2161865234375 2 545.829643 1089.64473 0.068331 3.7297E-05 0.87801 0.00047924 0.94634 0.00051654 545.8300727266968 76.232 0.38316 75.752 75.526 75.909 -0.47945 50 15 4 0 0 0 0.21242 1 41634 41634 5.2307 5.2307 1 4968300 + 68467 20292 45536 46558 79970 79970 0.10349738567697386 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.9063415527344 3 369.906088 1106.69644 0.17016 6.2945E-05 0.53677 0.00019855 0.70694 0.0002615 369.90625433250665 75.416 0.57183 75.462 75.266 75.838 0.045967 88 26 5 0 0 0 0.11784 2 41533 41533;41642 31.268 22.523 1 129180000 68468 9836 45537 46559 79971;79972 79971 0.14735482261608013 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3563842773438 2 554.355494 1106.69644 0.36099 0.00020012 0.68354 0.00037892 1.0445 0.00057904 554.35596631163 75.422 0.29739 75.468 75.307 75.605 0.045967 33 13 3 0 0 0 0.040683 1 41583 41583 64.236 34.012 1 4173400 68469 9836 45537 46559 79973 79973 0.14735482261608013 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.9065551757812 3 369.906088 1106.69644 2.0088 0.00074306 -0.39599 -0.00014648 1.6128 0.00059658 369.90584763275183 97.519 0.42328 91.343 91.203 91.627 -6.1757 65 25 4 0 0 0 0.11784 2 64696 64584;64696 31.268 22.523 1 227610000 68470 9836 45537 46559 79974;79975 79975 0.14735482261608013 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.355712890625 2 554.355494 1106.69644 1.488 0.0008249 -0.36659 -0.00020322 1.1214 0.00062168 554.355150632084 97.531 0.28272 91.356 91.24 91.523 -6.1757 26 15 3 0 0 0 0.036857 1 64653 64653 67.344 29.193 1 31556000 68471 9836 45537 46559 79976 79976 0.14735482261608013 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.9062805175781 3 369.906088 1106.69644 1.9445 0.00071927 -0.33768 -0.00012491 1.6068 0.00059436 369.90592982176076 98.114 0.62656 91.938 91.476 92.102 -6.1757 119 41 4 0 0 0 0.078314 3 64830 64830;64950;65086 38.176 29.43 1 223290000 68472 9836 45537 46559 79977;79978;79979 79977 0.14735482261608013 VFIPIHIRL 9 Unmodified _VFIPIHIRL_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.35595703125 2 554.355494 1106.69644 1.4159 0.00078494 0.056719 3.1443E-05 1.4727 0.00081638 554.3555649063227 98.127 0.32565 91.951 91.731 92.057 -6.1757 54 20 3 0 0 0 0.025842 2 65112 64968;65112 74.423 36.272 1 40058000 68473 9836 45537 46559 79980;79981 79981 0.14735482261608013 VFIQPFPWSF 10 Unmodified _VFIQPFPWSF_ 0 0 0 nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11 nc|ENSG00000092931|O43934-2|MFSD11 nc|ENSG00000092931|O43934-2|MFSD11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8304443359375 2 634.329142 1266.64373 0.52959 0.00033593 0.64026 0.00040614 1.1698 0.00074207 634.3295658906853 101.9 0.09919 95.726 95.68 95.78 -6.1757 11 4 3 0 0 0 0.0073675 1 68408 68408 92.491 69.755 1 12561000 68474 1624 45538 46560 79982 79982 0.02107479408141444 VFIRGGEEF 9 Unmodified _VFIRGGEEF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2694702148438 2 527.271824 1052.5291 0.32455 0.00017112 -0.24773 -0.00013062 0.076814 4.0502E-05 527.2715934342706 45.515 0.28893 45.515 45.396 45.685 0 48 15 4 0 0 0 0.0086722 2 24774 24774;24889 88.954 46.859 1 125680000 68475 8367 45539 46561 79983;79984 79983 0.0049316992619878874 VFIRGGEEF 9 Unmodified _VFIRGGEEF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.27197265625 2 527.271824 1052.5291 0.0090089 4.7501E-06 -0.38934 -0.00020529 -0.38033 -0.00020054 527.2716015354073 45.791 0.30281 45.466 45.337 45.64 -0.32425 43 17 3 0 0 0 0.047788 2 24568 24455;24568 45.7 18.373 1 114770000 68476 8367 45539 46561 79985;79986 79986 0.0049316992619878874 VFIRGGEEF 9 Unmodified _VFIRGGEEF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2709350585938 2 527.271824 1052.5291 0.051408 2.7106E-05 0.301 0.00015871 0.35241 0.00018582 527.2720849438672 45.472 0.23932 45.444 45.343 45.582 -0.028011 22 12 2 0 0 0 0.023481 1 24410 24410 60.074 29.437 1 16379000 68477 8367 45539 46561 79987 79987 0.0049316992619878874 VFIRGGEEF 9 Unmodified _VFIRGGEEF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.27197265625 2 527.271824 1052.5291 0.77778 0.0004101 -1.2389 -0.00065324 -0.46112 -0.00024314 527.2716448770717 51.519 0.54622 45.87 45.558 46.104 -5.649 104 33 4 0 0 0 0.023481 3 32451 32329;32451;32584 60.074 27.768 1 482210000 68478 8367 45539 46561 79988;79989;79990 79989 0.0049316992619878874 VFIRSTNIF 9 Unmodified _VFIRSTNIF_ 0 0 0 nc|ENSG00000162836|Q9NPH0-2|ACP6;ENSG00000162836|ENST00000583509|ACP6 nc|ENSG00000162836|Q9NPH0-2|ACP6 nc|ENSG00000162836|Q9NPH0-2|ACP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8102416992188 2 548.811116 1095.60768 0.32911 0.00018062 -0.54326 -0.00029815 -0.21415 -0.00011753 548.8106057284884 60.396 0.22608 60.352 60.23 60.457 -0.04351 16 10 2 0 0 0 0.0082981 1 32918 32918 118.89 68.04 1 11046000 68479 6919 45540 46562 79991 79991 0.06370022231271832 VFISSSLNTF 10 Unmodified _VFISSSLNTF_ 0 0 0 ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB ENST00000481742.1_1_19:36606435-36607215:+|nuORF ENST00000481742.1_1_19:36606435-36607215:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7930908203125 2 557.792589 1113.57063 0.59556 0.0003322 0.50094 0.00027942 1.0965 0.00061161 557.7928005068263 74.062 0.39537 74.106 73.924 74.319 0.043983 58 17 4 0 0 0 0.30444 1 40872 40872 39.957 19.504 1 24739000 68480 2294 45541 46563 79992 79992 0.01838305894852965 VFITFTYGF 9 Unmodified _VFITFTYGF_ 0 0 0 ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC ENSG00000135845|ENST00000344529|PIGC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7875366210938 2 547.781493 1093.54843 0.43749 0.00023965 -0.0060685 -3.3242E-06 0.43143 0.00023633 547.7797464751982 83.725 0.50629 83.228 82.914 83.421 -0.49751 58 20 4 0 0 0 0.48152 1 45724 45724 8.5933 2.3875 1 2970000 68481 4748 45542 46564 79993 79993 0.005401262170835253 VFKDQWFWRVR 11 Unmodified _VFKDQWFWRVR_ 0 0 0 nc|ENSG00000156103|P51512-2|MMP16;ENSG00000156103|ENST00000286614|MMP16 nc|ENSG00000156103|P51512-2|MMP16 nc|ENSG00000156103|P51512-2|MMP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.9215698242188 2 783.920052 1565.82555 -0.41914 -0.00032857 0.57829 0.00045334 0.15915 0.00012476 783.9214255313227 102.26 0.086067 102.21 102.17 102.26 -0.045853 8 2 4 0 0 0 0.74157 1 56822 56822 0.35063 0.081612 1 5803700 68482 16291 45543 46565 79994 79994 0.0652721215371912 VFKEKHHSW 9 Unmodified _VFKEKHHSW_ 0 0 0 nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B nc|ENSG00000136104|Q5TBB1-2|RNASEH2B nc|ENSG00000136104|Q5TBB1-2|RNASEH2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.8768005371094 3 399.876969 1196.60908 0.26752 0.00010697 0.65781 0.00026304 0.92533 0.00037002 399.8771885012425 15.687 0.18749 13.16 13.083 13.271 -2.5273 96 43 3 0 0 0 0.14 1 8040 8040 27.223 27.223 1 5836200 68483 4787 45544 46566 79995 79995 0.01863656320051632 VFKKKHQII 9 Unmodified _VFKKKHQII_ 0 0 0 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 ENSG00000122970|ENST00000242591|IFT81 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.9135437011719 3 380.913243 1139.7179 0.87156 0.00033199 -0.47417 -0.00018062 0.3974 0.00015137 380.9129729558288 17.399 0.15433 14.813 14.722 14.876 -2.5866 38 26 2 0 0 0 0.54213 1 9057 9057 4.897 2.3985 1 3503100 68484 3673 45545 46567 79996 79996 0.1536286729033236 VFKLFFFF 8 Unmodified _VFKLFFFF_ 0 0 0 REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8093872070312 2 547.807314 1093.60008 1.0292 0.0005638 1.9385 0.0010619 2.9677 0.0016257 547.8086183214399 36.961 0.58393 32.677 32.472 33.056 -4.2835 81 35 3 0 0 0 0.50586 2 21709 21709;21819 34.187 1.6674 1 68041000 + 68485 27223 45546 46568 79997;79998 79997 0.057019147016490024 VFKLWPLSF 9 Unmodified _VFKLWPLSF_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.82958984375 2 568.828778 1135.643 2.9645 0.0016863 -1.846 -0.0010501 1.1185 0.00063621 568.8277267084611 99.801 0.23939 99.764 99.666 99.905 -0.036301 19 8 3 0 0 0 0.0090524 1 55432 55432 85.642 65.188 1 5053900 68486 367 45547 46569 79999 79999 0.08060684759084324 VFKLWPLSF 9 Unmodified _VFKLWPLSF_ 0 0 0 nc|ENSG00000007541|Q9BRB3-3|PIGQ;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ nc|ENSG00000007541|Q9BRB3-3|PIGQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8295288085938 2 568.828778 1135.643 1.4574 0.00082899 -0.7154 -0.00040694 0.74196 0.00042205 568.8279883961467 101.06 0.15908 94.884 94.815 94.974 -6.1757 20 8 3 0 0 0 0.009483 1 67731 67731 81.89 59.232 1 102500000 68487 367 45547 46569 80000 80000 0.08060684759084324 VFKNEDIIYL 10 Unmodified _VFKNEDIIYL_ 0 0 0 REV__ENSG00000273706|ENST00000614239|LHX1 REV__ENSG00000273706|ENST00000614239|LHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3440551757812 2 627.342446 1252.67034 0.3195 0.00020044 2.7909 0.0017508 3.1104 0.0019513 627.3443800295971 85.837 0.26274 85.336 85.207 85.469 -0.5015 20 10 3 0 0 0 0.67459 1 46961 46961 5.7319 0 1 290880 + 68488 24636 45548 46570 80001 80001 0.054111235088385 VFKPISSTW 9 Unmodified _VFKPISSTW_ 0 0 0 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 ENSG00000115760|ENST00000421745|BIRC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7926025390625 2 532.792392 1063.57023 0.04317 2.3001E-05 0.90687 0.00048318 0.95004 0.00050618 532.7928049247372 54.318 0.31717 54.251 54.021 54.338 -0.06694 37 15 3 0 0 0 0.19127 1 29462 29462 24.021 4.7636 1 7167600 68489 3160 45549 46571 80002 80002 0.04098930965665204 VFKPIVEKF 9 Unmodified _VFKPIVEKF_ 0 0 0 ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA ENSG00000137996|ENST00000370128|RTCA ENSG00000137996|ENST00000370128|RTCA MSMS AL20221201_MKP_PDAC_01 4 369.5592956542969 3 369.558466 1105.65357 NaN NaN NaN NaN NaN NaN NaN 53.009 1 47.205 46.705 47.705 -5.8042 0 0 0 0.23566 1 33468 33468 28.495 9.7733 1 68490 5000 45550 46572 80003 80003 0.10496667413531213 VFKQINNYI 9 Unmodified _VFKQINNYI_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.816162109375 2 569.816399 1137.61824 0.45895 0.00026152 -0.044787 -2.552E-05 0.41416 0.000236 569.8163161556 50.933 0.21393 50.879 50.728 50.942 -0.053875 19 10 2 0 0 0 0.012148 1 27543 27543 74.423 45.341 1 4493200 68491 1489 45551 46573 80004 80004 0.054940048857361035 VFKQINNYI 9 Unmodified _VFKQINNYI_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 569.816399 1137.61824 0.88268 0.00050296 -0.40534 -0.00023097 0.47734 0.000272 569.8160766967834 57.024 0.19228 51.047 50.923 51.115 -5.9769 0.084013 -0.00023519 NaN 74.423 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 15008000 68492 1489 45551 46573 0.054940048857361035 VFKSTLFDL 9 Unmodified _VFKSTLFDL_ 0 0 0 REV__TAF5|p.R301L|1|0.03|ENSG00000148835|chr10:103378339-103378339|G/T|missense_variant REV__TAF5|p.R301L|1|0.03|ENSG00000148835|chr10:103378339-103378339|G/T|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7749633789062 2 535.30005 1068.58555 -0.14414 -7.716E-05 -1.5482 -0.00082875 -1.6923 -0.00090591 535.7994480051243 51.301 0.15926 51.247 51.127 51.286 -0.053875 9 7 2 0 0 0 0.21367 1 27706 27706 2.0598 1.535 1 1423200 + 68493 30107 45552 46574 80005 80005 0.05399797762856906 VFKSTPALF 9 Unmodified _VFKSTPALF_ 0 0 0 nc|ENSG00000121380|Q9BZR8-2|BCL2L14;nc|ENSG00000121380|Q9BZR8-3|BCL2L14;ENSG00000121380|ENST00000308721|BCL2L14 nc|ENSG00000121380|Q9BZR8-2|BCL2L14 nc|ENSG00000121380|Q9BZR8-2|BCL2L14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.2903747558594 2 505.289485 1008.56442 0.62539 0.000316 0.26179 0.00013228 0.88718 0.00044828 505.28987214064915 56.831 0.27814 56.762 56.578 56.857 -0.068741 29 13 3 0 0 0 0.028475 1 30874 30874 56.177 8.4284 1 4706200 68494 3580 45553 46575 80006 80006 0.06047832453987212 VFKTTLNEF 9 Unmodified _VFKTTLNEF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7958374023438 2 549.795132 1097.57571 0.55262 0.00030383 -0.27366 -0.00015046 0.27896 0.00015337 549.7951144834557 52.386 0.25415 51.952 51.789 52.044 -0.43367 31 12 3 0 0 0 0.032796 1 28267 28267 53.833 25.346 1 14016000 68495 1990 45554 46576 80007 80007 0.03082609757461796 VFKTTLNEF 9 Unmodified _VFKTTLNEF_ 0 0 0 nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3;ENST00000581302.5_1_18:21033283-21057068:+|nuORF nc|ENSG00000101782|O14730-2|RIOK3 nc|ENSG00000101782|O14730-2|RIOK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.7968139648438 2 549.795132 1097.57571 0.37872 0.00020822 2.0354 0.0011191 2.4141 0.0013273 549.7962229228793 52.031 0.27502 51.973 51.792 52.067 -0.058918 27 12 3 0 0 0 0.044011 1 28150 28150 47.749 17.524 1 5796200 68496 1990 45554 46576 80008 80008 0.03082609757461796 VFKYGHFSL 9 Unmodified _VFKYGHFSL_ 0 0 0 ENSG00000163964|ENST00000392391|PIGX;nc|ENSG00000163964|Q8TBF5-2|PIGX ENSG00000163964|ENST00000392391|PIGX ENSG00000163964|ENST00000392391|PIGX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8646240234375 3 366.530798 1096.57057 0.022704 8.3217E-06 -0.94066 -0.00034478 -0.91796 -0.00033646 366.53057005186196 54.407 0.1985 54.34 54.182 54.38 -0.066936 14 9 2 0 0 0 0.2001 1 29536 29536 16.149 9.4259 1 3431400 68497 7109 45555 46577 80009 80009 0.026143506855078158 VFLAESALH 9 Unmodified _VFLAESALH_ 0 0 0 ENST00000515038.1_1_5:139060567-139061044:+|nuORF;nc|ENSG00000171604|Q7LFL8-2|CXXC5;ENSG00000171604|ENST00000302517|CXXC5 ENST00000515038.1_1_5:139060567-139061044:+|nuORF ENST00000515038.1_1_5:139060567-139061044:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7694702148438 2 493.768917 985.523281 0.81914 0.00040447 0.24386 0.00012041 1.063 0.00052488 493.7690878619849 66.065 0.67655 59.889 59.692 60.368 -6.1757 101 38 4 0 0 0 0.019979 1 42988 42988 63.563 0 1 117610000 68498 8121 45556 46578 80010 80010 0.029940714145254788 VFLAGSTLDL 10 Unmodified _VFLAGSTLDL_ 0 0 0 REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 REV__nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2887573242188 2 518.289682 1034.56481 0.94137 0.0004879 0.13341 6.9147E-05 1.0748 0.00055705 518.2896965356107 63.116 1.2586 56.941 56.563 57.822 -6.1757 198 69 4 0 0 0 0.1028 1 41263 41263 46.021 11.619 1 740500000 + 68499 24470 45557 46579 80011 80011 0.04891207383184337 VFLAIPLAF 9 Unmodified _VFLAIPLAF_ 0 0 0 ENSG00000105971|ENST00000222693|CAV2;nc|ENSG00000105971|P51636-2|CAV2;ENST00000495841.1_1_7:116140184-116146172:+|nuORF ENSG00000105971|ENST00000222693|CAV2 ENSG00000105971|ENST00000222693|CAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 990.602783203125 1 990.602266 989.59499 0.8907 0.00088233 1.0363 0.0010265 1.927 0.0019089 990.6031989540377 102.26 0.10494 96.08 96.027 96.132 -6.1757 8 4 2 0 0 0 0.01018 1 68627 68627 79.935 12.522 1 7363800 68500 2383 45558 46580 80012 80012 0.09977610839052886 VFLALGGR 8 Unmodified _VFLALGGR_ 0 0 0 REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF REV__ENST00000548760.2_1_12:98909279-98909996:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 832.5062866210938 1 832.503949 831.496673 1.6215 0.0013499 0.26357 0.00021942 1.885 0.0015693 832.5041374626232 104.66 0.21038 98.488 98.327 98.538 -6.1757 15 12 2 0 0 0 0.81107 1 70020 70020 0 0 1 9702200 + 68501 28689 45559 46581 80013 80013 0.07418427313871234 VFLALPCKF 9 Carbamidomethyl (C) _VFLALPC(Carbamidomethyl (C))KF_ VFLALPC(1)KF VFLALPC(55)KF 0 1 0 nc|ENSG00000104450|Q07617-2|SPAG1 nc|ENSG00000104450|Q07617-2|SPAG1 nc|ENSG00000104450|Q07617-2|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8055419921875 2 547.806988 1093.59942 1.0275 0.00056285 -1.8354 -0.0010054 -0.80794 -0.00044259 547.8061867692624 92.11 0.45283 85.934 85.648 86.101 -6.1757 60 26 3 0 0 0 0.031062 2 60771 60771;60910 54.774 25.15 1 21072000 68502 16099 45560 46582 80014;80015 80014 1009 0.05636751990277844 VFLAQKLF 8 Unmodified _VFLAQKLF_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A;ENST00000468496.5_1_17:40362419-40369297:-|nuORF;ENST00000591556.1_1_17:40458135-40460407:+|nuORF;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000173757|ENST00000293328|STAT5B nc|ENSG00000126561|P42229-2|STAT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.29345703125 2 483.294571 964.574589 -0.15481 -7.4821E-05 -0.087769 -4.2418E-05 -0.24258 -0.00011724 483.29456257409504 55.743 0.23374 55.674 55.548 55.782 -0.068737 21 11 2 0 0 0 0.5953 1 30267 30267 26.341 8.2063 1 3678800 68503 3956;8360 45561 46583 80016 80016 0.09088440179232293 VFLCLNSFL 9 Unmodified _VFLCLNSFL_ 0 0 0 REV__ENSG00000105983|ENST00000353442|LMBR1 REV__ENSG00000105983|ENST00000353442|LMBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5244140625 3 352.524656 1054.55214 NaN NaN NaN NaN NaN NaN NaN 15.414 1 15.414 14.914 15.914 0 0 0 0 0.82739 1 7422 7422 4.897 0 1 + 68504 18480 45562 46584 80017 80017 0.027044727193015206 VFLERWIRKIF 11 Unmodified _VFLERWIRKIF_ 0 0 0 REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF REV__ENST00000424989.1_1_1:37921191-37921512:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.9703979492188 3 502.96964 1505.88709 1.1652 0.00058608 -0.33212 -0.00016705 0.83311 0.00041903 502.9692454123583 87.625 0.50957 81.449 81.237 81.747 -6.1757 87 27 4 0 0 0 0.73115 1 57965 57965 0.45452 0.046251 1 52148000 + 68505 26885 45563 46585 80018 80018 0.1543814385299811 VFLETRLAF 9 Unmodified _VFLETRLAF_ 0 0 0 ENST00000409807.5_1_2:106013113-106013155:-|nuORF;ENST00000322142.12_1_2:106013113-106015436:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3134155273438 2 548.313492 1094.61243 0.32312 0.00017717 0.096889 5.3126E-05 0.42001 0.0002303 548.313529863678 73.85 0.78584 73.894 73.713 74.499 0.043983 57 35 2 0 0 0 0.06294 2 40706 40706;40812 41.84 22.583 1 48214000 68506 11780 45564 46586 80019;80020 80019 0.0689090637404206 VFLETRLAF 9 Unmodified _VFLETRLAF_ 0 0 0 ENST00000409807.5_1_2:106013113-106013155:-|nuORF;ENST00000322142.12_1_2:106013113-106015436:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.3139038085938 2 548.313492 1094.61243 0.87397 0.00047921 0.25103 0.00013765 1.125 0.00061686 548.3134204314198 91.1 0.85173 84.924 84.46 85.312 -6.1757 142 49 3 0 0 0 0.021948 1 60198 60198 61.602 29.296 1 65120000 68507 11780 45564 46586 80021 80021 0.0689090637404206 VFLETRLAF 9 Unmodified _VFLETRLAF_ 0 0 0 ENST00000409807.5_1_2:106013113-106013155:-|nuORF;ENST00000322142.12_1_2:106013113-106015436:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF ENST00000409807.5_1_2:106013113-106013155:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.313492 1094.61243 0.6482 0.00035542 -0.4555 -0.00024976 0.1927 0.00010566 548.8144195537336 74.451 0.1103 73.975 73.887 73.997 -0.47588 0.040903 -0.00059515 NaN 41.84 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 242060 68508 11780 45564 46586 0.0689090637404206 VFLFFWFGGF 10 Unmodified _VFLFFWFGGF_ 0 0 0 ENST00000563328.4_1_16:72821533-72822025:+|nuORF ENST00000563328.4_1_16:72821533-72822025:+|nuORF ENST00000563328.4_1_16:72821533-72822025:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.21728515625 3 422.883061 1265.62735 0.03661 1.5482E-05 0.17139 7.2477E-05 0.208 8.7959E-05 423.2171633505583 16.706 0.11029 16.711 16.63 16.741 0.0050564 8 6 2 0 0 0 0.70951 1 8396 8396 0.77653 0 1 401800 68509 15360 45565 46587 80022 80022 0.005163982420299362 VFLFKLLIL 9 Unmodified _VFLFKLLIL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.374267578125 2 553.372821 1104.73109 1.5927 0.00088134 1.8184 0.0010062 3.411 0.0018876 553.3735027747983 103.41 0.11328 97.23 97.183 97.296 -6.1757 24 14 2 0 0 0 0.61256 1 69366 69366 0.6015 0 1 5143400 68510 8367 45566 46588 80023 80023 0.18291305349725917 VFLGASYLL 9 Unmodified _VFLGASYLL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7847290039062 2 491.784036 981.553519 1.8685 0.00091892 -1.2791 -0.00062906 0.5894 0.00028986 491.7835507502826 92.638 0.31068 92.669 92.519 92.83 0.030197 18 11 2 0 0 0 0.068777 1 51543 51543 40.449 8.3316 1 3891800 68511 2721 45567 46589 80024 80024 0.062004300797070755 VFLGASYLL 9 Unmodified _VFLGASYLL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.560546875 1 982.560795 981.553519 1.2611 0.0012391 -1.5503 -0.0015232 -0.28916 -0.00028412 982.5607453181682 100.16 0.25684 93.984 93.884 94.141 -6.1757 34 15 3 0 0 0 0.019979 1 66884 66884 63.563 12.708 1 74962000 68512 2721 45567 46589 80025 80025 0.062004300797070755 VFLGASYLL 9 Unmodified _VFLGASYLL_ 0 0 0 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 ENSG00000110446|ENST00000227880|SLC15A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7842407226562 2 491.784036 981.553519 1.281 0.00062996 -0.37577 -0.0001848 0.90521 0.00044517 491.7840156130695 100.16 0.25684 93.984 93.884 94.141 -6.1757 33 15 4 0 0 0 0.16776 1 66889 66889 26.341 0 1 89183000 68513 2721 45567 46589 80026 80026 0.062004300797070755 VFLGSGLLG 9 Unmodified _VFLGSGLLG_ 0 0 0 REV__ENST00000490672.1_1_1:155145120-155145778:-|nuORF REV__ENST00000490672.1_1_1:155145120-155145778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 863.36572265625 1 862.503281 861.496004 0.12234 0.00010552 0.65852 0.00056798 0.78086 0.00067349 862.5037785109425 73.482 0.4258 73.006 72.804 73.229 -0.47588 51 18 4 0 0 0 0.62242 1 40103 40103 0 0 1 13410000 + 68514 21766 45568 46590 80027 80027 0.059715878741599226 VFLHKGNFF 9 Unmodified _VFLHKGNFF_ 0 0 0 ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2031555175781 3 370.202793 1107.58655 1.1779 0.00043608 -0.47593 -0.00017619 0.70201 0.00025989 370.20250338612993 49.978 0.28324 49.929 49.763 50.046 -0.048824 30 13 3 0 0 0 0.39863 1 27001 27001 12.241 10.155 1 2722900 68515 3601 45569 46591 80028 80028 0.037060569224195206 VFLKAGASF 9 Unmodified _VFLKAGASF_ 0 0 0 ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2696228027344 2 470.268553 938.522553 0.95832 0.00045067 0.48688 0.00022897 1.4452 0.00067963 470.2689486943643 50.484 0.34346 50.435 50.25 50.594 -0.048824 42 16 3 0 0 0 0.024882 2 27253 27253;27352 58.679 22.635 1 8824900 68516 12284 45570 46592 80029;80030 80029 0.05083276765469691 VFLKAGASF 9 Unmodified _VFLKAGASF_ 0 0 0 ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF ENST00000368875.6_2_1:151298654-151299818:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2682495117188 2 470.268553 938.522553 0.57303 0.00026948 -0.10426 -4.9028E-05 0.46878 0.00022045 470.26852055944414 56.605 0.41474 50.628 50.428 50.843 -5.9769 41 23 2 0 0 0 0.0090524 2 36203 36069;36203 85.642 51.454 1 48329000 68517 12284 45570 46592 80031;80032 80032 0.05083276765469691 VFLKNEVQR 9 Unmodified _VFLKNEVQR_ 0 0 0 EPB42|p.A153V|1|0.04|ENSG00000166947|chr15:43211507-43211507|G/A|missense_variant EPB42|p.A153V|1|0.04|ENSG00000166947|chr15:43211507-43211507|G/A|missense_variant EPB42|p.A153V|1|0.04|ENSG00000166947|chr15:43211507-43211507|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2203674316406 3 378.220624 1131.64004 -0.45157 -0.00017079 -0.47734 -0.00018054 -0.92892 -0.00035134 378.2204028316701 20.415 0.18833 20.415 20.296 20.485 0 65 30 3 0 0 0 0.55144 1 10246 10246 2.4985 0 1 5095100 68518 15891 45571 46593 80033 80033 0.07948809634262943 VFLKRLNHL 9 Unmodified _VFLKRLNHL_ 0 0 0 REV__ENSG00000155980|ENST00000455537|KIF5A;REV__ENST00000482151.1_2:149856814-149868187:+|nuORF REV__ENSG00000155980|ENST00000455537|KIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5723266601562 3 380.573109 1138.6975 1.2471 0.00047462 -2.1593 -0.00082176 -0.91215 -0.00034714 380.5722073492954 30.249 0.26381 26.752 26.592 26.856 -3.497 15 12 2 0 0 0 0.2324 1 17050 17050 20.415 3.366 1 11758000 + 68519 21303;22298 45572 46594 80034 80034 0.1336969663052514 VFLLGAALVL 10 Unmodified _VFLLGAALVL_ 0 0 0 REV__nc|ENSG00000175697|Q8NFN8-2|GPR156 REV__nc|ENSG00000175697|Q8NFN8-2|GPR156 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3308715820312 2 508.331153 1014.64775 0.48233 0.00024518 0.56674 0.00028809 1.0491 0.00053327 508.33132099620633 74.352 0.26629 74.396 74.279 74.545 0.043983 19 11 2 0 0 0 0.14518 1 40994 40994 40.449 0 1 2591800 + 68520 22887 45573 46595 80035 80035 0.1410156890183316 VFLLGKLLI 9 Unmodified _VFLLGKLLI_ 0 0 0 nc|ENSG00000144029|P82675-2|MRPS5;ENST00000272418.6_1_2:95766602-95770453:-|nuORF nc|ENSG00000144029|P82675-2|MRPS5 nc|ENSG00000144029|P82675-2|MRPS5 MSMS AL20221201_MKP_PDAC_01 4 508.3498229980469 2 508.349346 1014.68414 NaN NaN NaN NaN NaN NaN NaN 106.14 1 99.968 99.468 100.47 -6.1757 0 0 0 0.8622 1 71067 71067 0 0 1 68521 16246 45574 46596 80036 80036 0.17738445798579505 VFLLKPLKW 9 Unmodified _VFLLKPLKW_ 0 0 0 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.9152221679688 3 381.914472 1142.72159 1.7298 0.00066063 -0.4562 -0.00017423 1.2736 0.0004864 381.9142770768527 96.45 0.3868 90.274 90.104 90.491 -6.1757 47 22 4 0 0 0 0.019303 1 63854 63854 57.722 46.922 1 88269000 68522 5854 45575 46597 80037 80037 0.15593537064160046 VFLLKPLKW 9 Unmodified _VFLLKPLKW_ 0 0 0 ENSG00000147457|ENST00000397677|CHMP7;ENST00000517325.5_1_8:23104188-23118109:+|nuORF ENSG00000147457|ENST00000397677|CHMP7 ENSG00000147457|ENST00000397677|CHMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.3689575195312 2 572.36807 1142.72159 1.3761 0.00078761 -0.73792 -0.00042236 0.63814 0.00036525 572.3674016660725 96.469 0.20106 90.294 90.136 90.337 -6.1757 19 11 2 0 0 0 0.008678 1 63873 63873 88.904 71.791 1 17380000 68523 5854 45575 46597 80038 80038 0.15593537064160046 VFLLPAKLGF 10 Unmodified _VFLLPAKLGF_ 0 0 0 ENST00000259030.2_1_3:187086168-187088722:+|nuORF ENST00000259030.2_1_3:187086168-187088722:+|nuORF ENST00000259030.2_1_3:187086168-187088722:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.7618408203125 2 552.844428 1103.6743 0.25581 0.00014142 0.081553 4.5086E-05 0.33736 0.00018651 552.8449714691837 99.808 0.11713 93.632 93.574 93.691 -6.1757 11 8 2 0 0 0 0.22148 1 66567 66567 26.884 8.7487 1 15484000 68524 11211 45576 46598 80039 80039 0.12661257793183722 VFLNLHTLKF 10 Unmodified _VFLNLHTLKF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2458801269531 3 411.24477 1230.71248 -0.1349 -5.5478E-05 0.85533 0.00035175 0.72042 0.00029627 411.2451123649209 72.566 0.31686 72.608 72.465 72.782 0.041733 45 14 4 0 0 0 0.17804 2 39930 39930;40033 36.395 19.829 1 7559100 68525 7807 45577 46599 80040;80041 80040 0.1063514370782741 VFLNLHTLKF 10 Unmodified _VFLNLHTLKF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.2453002929688 3 411.24477 1230.71248 1.2164 0.00050023 0.36903 0.00015176 1.5854 0.00065199 411.24491827749165 95.072 0.23737 88.896 88.767 89.004 -6.1757 32 12 3 0 0 0 0.040614 1 62944 62944 62.869 41.278 1 74989000 68526 7807 45577 46599 80042 80042 0.1063514370782741 VFLNLHTLKF 10 Unmodified _VFLNLHTLKF_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;nc|ENSG00000168883|Q53GS9-3|USP39 ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.864990234375 2 616.363516 1230.71248 0.90116 0.00055544 0.47405 0.00029219 1.3752 0.00084763 616.3638386805301 95.079 0.14575 88.903 88.803 88.949 -6.1757 17 7 3 0 0 0 0.0041527 1 62969 62969 124.95 88.826 1 11580000 68527 7807 45577 46599 80043 80043 0.1063514370782741 VFLPDNGAFF 10 Unmodified _VFLPDNGAFF_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000165548|ENST00000298351|TMEM63C nc|ENSG00000137216|Q5T3F8-3|TMEM63B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.7819213867188 2 563.782025 1125.5495 1.5365 0.00086623 -0.90314 -0.00050917 0.63333 0.00035706 563.781695856349 91.726 0.30717 91.763 91.586 91.893 0.036499 18 10 2 0 0 0 0.18439 1 51022 51022 34.402 12.655 1 3706000 68528 4913;7359 45578 46600 80044 80044 -0.008256594139993467 VFLPDQGAFF 10 Unmodified _VFLPDQGAFF_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2899780273438 2 570.78985 1139.56515 0.58399 0.00033333 -0.048086 -2.7447E-05 0.5359 0.00030589 570.7898037961332 92.025 0.32642 91.544 91.37 91.697 -0.48093 43 18 3 0 0 0 0.42068 2 50255 50255;50359 20.454 13.73 1 2222100 68529 9775 45579 46601 80045;80046 80045 0.0009462710304433131 VFLPDQGAFF 10 Unmodified _VFLPDQGAFF_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2913208007812 2 570.78985 1139.56515 1.0521 0.00060051 -0.30616 -0.00017475 0.74591 0.00042576 570.7895573328708 91.492 0.37254 91.529 91.297 91.67 0.036499 35 13 3 0 0 0 0.18021 2 50845 50845;50946 36.127 12.979 1 13438000 68530 9775 45579 46601 80047;80048 80047 0.0009462710304433131 VFLPDQGAFF 10 Unmodified _VFLPDQGAFF_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MSMS AL20221201_MKP_PDAC_01 4 570.7898559570312 2 570.78985 1139.56515 NaN NaN NaN NaN NaN NaN NaN 99.696 1 93.52 93.02 94.02 -6.1757 0 0 0 0.57227 1 66467 66467 22.736 4.6013 1 68531 9775 45579 46601 80049 80049 0.0009462710304433131 VFLPPSFP 8 Unmodified _VFLPPSFP_ 0 0 0 ENSG00000142327|ENST00000270357|RNPEPL1;ENST00000481757.5_1_2:241513297-241513830:+|nuORF;ENST00000486058.5_1_2:241513323-241513830:+|nuORF ENSG00000142327|ENST00000270357|RNPEPL1 ENSG00000142327|ENST00000270357|RNPEPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2528991699219 2 452.252372 902.49019 0.88596 0.00040068 0.05122 2.3164E-05 0.93718 0.00042384 452.25214768603456 102 0.096878 95.822 95.757 95.854 -6.1757 6 4 2 0 0 0 0.80143 1 68484 68484 5.7604 0 1 3986400 68532 5409 45580 46602 80050 80050 0.03504489362467211 VFLPYPENTF 10 Unmodified _VFLPYPENTF_ 0 0 0 REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF REV__ENST00000473662.1_1_X:109462834-109560930:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5412292480469 3 409.541252 1225.60193 -0.38796 -0.00015889 -0.5541 -0.00022693 -0.94207 -0.00038582 409.54099461058325 22.95 0.16771 22.95 22.888 23.056 0 11 8 2 0 0 0 0.70951 1 11693 11693 0.77653 0 1 345200 + 68533 18205 45581 46603 80051 80051 -0.001851210710583473 VFLQNHVRF 9 Unmodified _VFLQNHVRF_ 0 0 0 nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF nc|ENSG00000157212|Q6ZW49-1|PAXIP1 nc|ENSG00000157212|Q6ZW49-1|PAXIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.551513671875 3 387.217214 1158.62981 0.51446 0.00019921 -0.63714 -0.00024671 -0.12268 -4.7504E-05 387.55153089404666 23.237 0.57149 20.459 20.203 20.774 -2.7784 152 44 4 0 0 0 0.49272 1 12564 12564 8.1555 1.0538 1 190200000 68534 13608 45582 46604 80052 80052 0.056842466997068186 VFLSCLEVL 9 Unmodified _VFLSCLEVL_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7841186523438 2 511.783179 1021.5518 2.457 0.0012574 -1.2614 -0.00064558 1.1955 0.00061186 511.78220800022456 95.488 0.38708 95.492 95.292 95.679 0.0041504 21 14 2 0 0 0 0.39863 1 53059 53059 12.532 0 1 771740 68535 6704 45583 46605 80053 80053 0.0418905299944754 VFLSGFSLF 9 Unmodified _VFLSGFSLF_ 0 0 0 ENST00000528927.5_1_11:418373-431830:-|nuORF;ENSG00000185101|ENST00000332826|ANO9;ENST00000532094.5_1_11:420655-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF ENST00000528927.5_1_11:418373-431830:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.2780456542969 2 508.776211 1015.53787 0.75767 0.00038548 3.0702 0.0015621 3.8279 0.0019475 508.7795192074997 93.718 0.21469 87.542 87.469 87.684 -6.1757 15 12 2 0 0 0 0.16229 1 62037 62037 24.674 11.166 1 4238200 68536 9332 45584 46606 80054 80054 0.030721435626787752 VFLSGMPEL 9 Unmodified _VFLSGMPEL_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2;ENST00000586461.1_1_19:16319820-16337387:+|nuORF;ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000072958|ENST00000291439|AP1M1 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7603759765625 2 496.759704 991.504854 1.3358 0.00066358 -0.74047 -0.00036784 0.59535 0.00029574 496.75960131439376 95.946 0.53306 89.77 89.508 90.041 -6.1757 50 32 2 0 0 0 0.052168 2 63504 63504;63625 44.407 10.22 1 9338000 68537 4133;1097 45585 46607 80055;80056 80055 0.008761934483004552 VFLSPLTTF 9 Unmodified _VFLSPLTTF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7890014648438 2 512.789318 1023.56408 NaN NaN NaN NaN NaN NaN NaN 97.137 1 97.13 96.63 97.63 -0.007019 0 0 0 0.33856 1 53948 53948 23.148 7.3012 1 68538 16067;16068 45586 46608 80057 80057 0.053244127341372405 VFLSPLTTF 9 Unmodified _VFLSPLTTF_ 0 0 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.78857421875 2 512.789318 1023.56408 0.86604 0.00044409 -0.14709 -7.5425E-05 0.71895 0.00036867 512.789042941343 100.72 0.22879 94.548 94.459 94.688 -6.1757 39 15 4 0 0 0 0.013472 1 67401 67401 70.716 13.244 1 204210000 68539 16067;16068 45586 46608 80058 80058 0.053244127341372405 VFLSVPCIL 9 Carbamidomethyl (C) _VFLSVPC(Carbamidomethyl (C))IL_ VFLSVPC(1)IL VFLSVPC(60)IL 0 1 0 ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA;ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA ENSG00000134333|ENST00000422447|LDHA ENSG00000134333|ENST00000422447|LDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.2994384765625 2 524.298996 1046.58344 1.6843 0.00088308 2.1621 0.0011336 3.8464 0.0020167 524.2986886162545 100.91 0.30499 94.739 94.651 94.956 -6.1757 25 17 3 0 0 0 0.023761 1 67599 67599 59.795 10.126 1 51752000 68540 4597 45587 46609 80059 80059 474 0.06201045753391554 VFLTTRQTL 9 Unmodified _VFLTTRQTL_ 0 0 0 ENSG00000100379|ENST00000403888|KCTD17;nc|ENSG00000100379|Q8N5Z5-2|KCTD17 ENSG00000100379|ENST00000403888|KCTD17 ENSG00000100379|ENST00000403888|KCTD17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8192138671875 2 539.816399 1077.61824 0.69377 0.00037451 0.64745 0.0003495 1.3412 0.00072401 539.8171413423174 47.462 0.26013 47.424 47.258 47.518 -0.038647 26 11 3 0 0 0 0.0090948 1 25580 25580 85.272 27.801 1 2444800 68541 1810 45588 46610 80060 80060 0.08254004885725408 VFLVESFDL 9 Unmodified _VFLVESFDL_ 0 0 0 nc|ENSG00000124159|O95460-4|MATN4;ENSG00000124159|ENST00000372756|MATN4;nc|ENSG00000124159|O95460|MATN4 nc|ENSG00000124159|O95460-4|MATN4 nc|ENSG00000124159|O95460-4|MATN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7847900390625 2 534.784233 1067.55391 0.31258 0.00016716 -0.069149 -3.698E-05 0.24343 0.00013018 534.7841171178162 97.228 0.48384 96.985 96.685 97.169 -0.24277 57 21 4 0 0 0 0.46577 1 53004 53004 9.3474 0 1 5085300 68542 3752 45589 46611 80061 80061 0.02283805008892159 VFLVFLNGNI 10 Unmodified _VFLVFLNGNI_ 0 0 0 nc|ENSG00000013503|Q9NW08-2|POLR3B;ENSG00000013503|ENST00000228347|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B nc|ENSG00000013503|Q9NW08-2|POLR3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2220458984375 3 379.221853 1134.64373 0.46731 0.00017722 -1.827 -0.00069283 -1.3597 -0.00051561 379.22163381396047 48.307 0.24815 47.935 47.791 48.039 -0.37172 19 12 2 0 0 0 0.5905 1 25912 25912 6.6304 0.84694 1 4749200 68543 475 45590 46612 80062 80062 0.08179479408136103 VFLVPPPS 8 Unmodified _VFLVPPPS_ 0 0 0 REV__ENST00000607453.1_1_1:245133255-245133372:-|nuORF REV__ENST00000607453.1_1_1:245133255-245133372:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 855.499267578125 1 855.497467 854.49019 0.74194 0.00063473 0.09097 7.7825E-05 0.83291 0.00071255 855.4972156147966 101.42 0.098999 95.242 95.192 95.291 -6.1757 7 4 2 0 0 0 0.28922 1 68051 68051 56.541 16.093 1 9411200 + 68544 29316 45591 46613 80063 80063 0.05712489362474571 VFLVPTGEVF 10 Unmodified _VFLVPTGEVF_ 0 0 0 ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.3085327148438 2 554.307875 1106.6012 NaN NaN NaN NaN NaN NaN NaN 94.533 1 94.112 93.612 94.612 -0.42044 0 0 0 0.96627 1 51646 51646 4.3292 0 1 68545 890 45592 46614 80064 80064 0.05216084279913957 VFLVVLLLIL 10 Unmodified _VFLVVLLLIL_ 0 0 0 REV__ENSG00000100647|ENST00000342745|SUSD6 REV__ENSG00000100647|ENST00000342745|SUSD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.4029541015625 2 571.401579 1140.7886 NaN NaN NaN NaN NaN NaN NaN 65.345 1 64.86 64.36 65.36 -0.48428 0 0 0 1.0019 1 35663 35663 0.45834 0 1 + 68546 18097 45593 46615 80065 80065 0.22384147555294476 VFLVYLLPLF 10 Unmodified _VFLVYLLPLF_ 0 0 0 ENST00000499291.6_1_12:11709371-11709509:+|nuORF ENST00000499291.6_1_12:11709371-11709509:+|nuORF ENST00000499291.6_1_12:11709371-11709509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5853881835938 3 408.586133 1222.73657 0.4816 0.00019678 -2.1108 -0.00086243 -1.6292 -0.00066566 408.5852736311036 70.408 0.25565 70.444 70.336 70.592 0.035515 26 11 3 0 0 0 0.68844 1 38779 38779 4.1895 2.4472 1 1552900 68547 14434 45594 46616 80066 80066 0.13410984141501103 VFLYPHGTDQ 10 Unmodified _VFLYPHGTDQ_ 0 0 0 REV__nc|ENSG00000291104|Q96KV6|BTN2A3P REV__nc|ENSG00000291104|Q96KV6|BTN2A3P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2910766601562 2 588.787838 1175.56112 0.86583 0.00050979 0.037071 2.1827E-05 0.9029 0.00053162 588.7876764483317 57.567 0.29682 57.501 57.397 57.694 -0.066036 32 14 3 0 0 0 0.48505 1 31324 31324 17.113 0 1 4287400 + 68548 30036 45595 46617 80067 80067 -0.019634623906540583 VFMCVRFVY 9 Unmodified _VFMCVRFVY_ 0 0 0 ENST00000453643.5_3_22:43308147-43389711:-|nuORF ENST00000453643.5_3_22:43308147-43389711:-|nuORF ENST00000453643.5_3_22:43308147-43389711:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.73974609375 2 582.290648 1162.56674 0.002047 1.1919E-06 0.21147 0.00012314 0.21352 0.00012433 582.2903555759351 65.763 0.28641 65.278 65.124 65.41 -0.48428 17 11 2 0 0 0 0.17666 1 35894 35894 19.439 2.4967 1 984670 68549 13558 45596 46618 80068 80068 -0.008037784042016938 VFMDTCALKI 10 Unmodified _VFMDTCALKI_ 0 0 0 REV__ENSG00000183706|ENST00000328795|OR4N4 REV__ENSG00000183706|ENST00000328795|OR4N4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.793212890625 2 570.79322 1139.57189 0.72874 0.00041596 -0.98484 -0.00056214 -0.2561 -0.00014618 570.7925523044405 57.229 0.30335 57.229 57.043 57.346 0 18 13 2 0 0 0 0.35903 1 31828 31828 24.021 3.5669 1 2478400 + 68550 23369 45597 46619 80069 80069 0.007684806677389133 VFMDTCALKI 10 Unmodified _VFMDTCALKI_ 0 0 0 REV__ENSG00000183706|ENST00000328795|OR4N4 REV__ENSG00000183706|ENST00000328795|OR4N4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 570.79322 1139.57189 0.72874 0.00041596 -0.98484 -0.00056214 -0.2561 -0.00014618 570.7925523044405 57.229 0.30335 57.229 57.043 57.346 0 0 0 NaN 24.021 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2478400 + 68551 23369 45597 46619 0.007684806677389133 VFMFPVGLYY 10 Oxidation (M) _VFM(Oxidation (M))FPVGLYY_ VFM(1)FPVGLYY VFM(50)FPVGLYY 0 0 1 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 626.3096313476562 2 626.309561 1250.60457 1.5056 0.00094296 -0.72518 -0.00045419 0.78041 0.00048878 626.309920720442 100.86 0.12578 94.688 94.623 94.748 -6.1757 14 7 3 0 0 0 0.086532 1 67565 67565 49.669 33.822 1 25120000 68552 4654 45598 46620 80070 80070 843 -0.010709889377267245 VFMKSVKLEW 10 Oxidation (M) _VFM(Oxidation (M))KSVKLEW_ VFM(1)KSVKLEW VFM(41)KSVKLEW 0 0 1 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2338562011719 3 428.233653 1281.67913 0.61103 0.00026166 0.17876 7.655E-05 0.78979 0.00033821 428.23354683998633 49.308 0.32687 49.265 49.07 49.397 -0.04369 52 15 5 0 0 0 0.1379 1 26593 26593 41.347 25.072 1 15015000 68553 1923 45599 46621 80071 80071 326 0.04955773873621183 VFMKSVKLEW 10 Oxidation (M) _VFM(Oxidation (M))KSVKLEW_ VFM(1)KSVKLEW VFM(49)KSVKLEW 0 0 1 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2335510253906 3 428.233653 1281.67913 1.2998 0.00055664 -0.47471 -0.00020329 0.82514 0.00035335 428.2335598458442 54.447 0.25702 48.581 48.366 48.623 -5.8653 25 15 2 0 0 0 0.091475 1 34477 34477 48.561 32.286 1 16857000 68554 1923 45599 46621 80072 80072 326 0.04955773873621183 VFMKSVKLEW 10 Unmodified _VFMKSVKLEW_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.9022827148438 3 422.902015 1265.68422 1.2964 0.00054827 -1.397 -0.00059081 -0.10059 -4.2538E-05 422.9011294308805 87.219 0.32629 81.043 80.895 81.221 -6.1757 30 17 2 0 0 0 0.47059 1 57462 57462 17.863 11.671 1 27447000 68555 1923 45599 46622 80073 80073 0.062000777362527515 VFMPHGLGHFL 11 Unmodified _VFMPHGLGHFL_ 0 0 0 nc|ENSG00000124299|P12955-3|PEPD;nc|ENSG00000124299|P12955-2|PEPD;ENSG00000124299|ENST00000244137|PEPD nc|ENSG00000124299|P12955-3|PEPD nc|ENSG00000124299|P12955-3|PEPD MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.8872985839844 3 418.886588 1253.63793 1.5881 0.00066524 0.14086 5.9005E-05 1.729 0.00072424 418.88659057024717 94.379 0.21818 88.204 88.064 88.282 -6.1757 33 12 4 0 0 0 0.49694 1 62481 62481 16.566 10.374 1 27384000 68556 3774 45600 46623 80074 80074 0.02126057624832356 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.8271484375 2 544.826766 1087.63898 0.74914 0.00040815 0.317 0.00017271 1.0661 0.00058086 544.8270282021961 79.936 0.35152 79.447 79.235 79.587 -0.48932 33 14 4 0 0 0 0.10247 2 43743 43743;43841 32.786 6.5175 1 2340000 68557 10189;3222;13991 45601 46624 80075;80076 80075 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8269653320312 2 544.826766 1087.63898 0.29427 0.00016032 0.73342 0.00039959 1.0277 0.00055991 544.827111883175 79.294 0.69182 79.349 79.13 79.821 0.05497 67 26 5 0 0 0 0.011291 3 43755 43739;43755;43861 76.825 27.27 1 126520000 68558 10189;3222;13991 45601 46624 80077;80078;80079 80078 0.09866595265384603 VFNDVRLLL 9 Unmodified _VFNDVRLLL_ 0 0 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000116489|ENST00000263168|CAPZA1;ENST00000476936.5_1_1:113162466-113209756:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8275756835938 2 544.826766 1087.63898 1.2959 0.00070602 0.0058028 3.1615E-06 1.3017 0.00070918 544.826775618128 97.283 0.36603 91.108 90.929 91.295 -6.1757 77 20 5 0 0 0 0.012228 2 64512 64396;64512 74.2 24.645 1 487250000 68559 10189;3222;13991 45601 46624 80080;80081 80081 0.09866595265384603 VFNGCPLKI 9 Carbamidomethyl (C) _VFNGC(Carbamidomethyl (C))PLKI_ VFNGC(1)PLKI VFNGC(48)PLKI 0 1 0 nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 nc|ENSG00000011566|Q8IVH8-3|MAP4K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.2882690429688 2 524.28642 1046.55829 -0.21342 -0.00011189 1.6868 0.00088438 1.4734 0.00077249 524.2874854120666 53.997 0.21547 53.931 53.806 54.021 -0.066936 16 10 2 0 0 0 0.042911 1 29313 29313 48.346 18.121 1 1471800 68560 453 45602 46625 80082 80082 26 0.03686990950814106 VFNHPRVP 8 Unmodified _VFNHPRVP_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2756042480469 2 483.269419 964.524284 0.032023 1.5476E-05 1.0331 0.00049925 1.0651 0.00051472 483.2702543971414 51.204 0.31839 51.15 51.007 51.325 -0.053871 20 15 2 0 0 0 0.77907 1 27652 27652 10.183 1.5901 1 1778700 + 68561 21988 45603 46626 80083 80083 0.04060330574088766 VFNKQFHSR 9 Unmodified _VFNKQFHSR_ 0 0 0 REV__ENSG00000119938|ENST00000238994|PPP1R3C REV__ENSG00000119938|ENST00000238994|PPP1R3C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8098754882812 2 581.809439 1161.60433 NaN NaN NaN NaN NaN NaN NaN 19.948 1 19.956 19.456 20.456 0.0078487 0 0 0 0.84211 1 10161 10161 1.8442 0.19162 1 + 68562 19221 45604 46627 80084 80084 0.02998772177261344 VFNYLHATAFQ 11 Unmodified _VFNYLHATAFQ_ 0 0 0 ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1;ENST00000467690.5_1_3:48641664-48646729:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5559692382812 3 437.555784 1309.64552 0.26956 0.00011795 -0.66932 -0.00029287 -0.39976 -0.00017492 437.55534741600417 33.449 0.28723 33.478 33.338 33.625 0.028934 33 12 4 0 0 0 0.58219 1 17581 17581 9.7643 0 1 14138000 68563 416 45605 46628 80085 80085 0.0030848842607156257 VFPAKRFCLV 10 Unmodified _VFPAKRFCLV_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT;nc|ENSG00000149313|Q9NRN7-2|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8955688476562 3 393.895083 1178.66342 -0.079118 -3.1164E-05 0.60573 0.00023859 0.52661 0.00020743 393.89529560226305 16.309 0.14124 16.314 16.216 16.357 0.0050564 25 10 3 0 0 0 0.62068 1 8166 8166 5.7834 0 1 1764600 68564 6003 45606 46629 80086 80086 0.08123532147237711 VFPDDMPTL 9 Unmodified _VFPDDMPTL_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7471923828125 2 517.746793 1033.47903 NaN NaN NaN NaN NaN NaN NaN 76.822 1 76.343 75.843 76.843 -0.47945 0 0 0 0.43505 1 42061 42061 18.135 10.846 1 68565 3348 45607 46630 80087 80087 -0.036367007939816176 VFPDDMPTL 9 Unmodified _VFPDDMPTL_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MSMS AL20221201_MKP_PDAC_01 4 517.7470092773438 2 517.746793 1033.47903 NaN NaN NaN NaN NaN NaN NaN 84.476 1 78.301 77.801 78.801 -6.1757 0 0 0 0.23581 1 55576 55576 28.487 4.4663 1 68566 3348 45607 46630 80088 80088 -0.036367007939816176 VFPDDMPTL 9 Unmodified _VFPDDMPTL_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MSMS AL20221201_MKP_PDAC_01 4 517.7473754882812 2 517.746793 1033.47903 NaN NaN NaN NaN NaN NaN NaN 84.657 1 78.481 77.981 78.981 -6.1757 0 0 0 0.26667 1 55709 55709 26.884 6.43 1 68567 3348 45607 46630 80089 80089 -0.036367007939816176 VFPDDMPTL 9 Unmodified _VFPDDMPTL_ 0 0 0 nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A nc|ENSG00000118058|Q03164-2|KMT2A MSMS AL20221201_MKP_PDAC_01 4 517.7542724609375 2 517.746793 1033.47903 NaN NaN NaN NaN NaN NaN NaN 84.742 1 78.566 78.066 79.066 -6.1757 0 0 0 0.071041 1 55774 55774 50.855 23.971 1 68568 3348 45607 46630 80090 80090 -0.036367007939816176 VFPDFYLHL 9 Unmodified _VFPDFYLHL_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8006591796875 2 575.800217 1149.58588 1.2202 0.00070261 0.093974 5.411E-05 1.3142 0.00075672 575.8004703047549 91.531 0.56261 91.568 91.244 91.806 0.036499 47 20 4 0 0 0 0.023761 2 50852 50852;50956 59.795 37.059 1 6204500 68569 10446 45608 46631 80091;80092 80091 0.01707217482703527 VFPDFYLHL 9 Unmodified _VFPDFYLHL_ 0 0 0 ENSG00000213614|ENST00000268097|HEXA;ENST00000568777.5_1_15:72638642-72646100:-|nuORF;ENST00000566672.5_1_15:72638574-72647950:-|nuORF;nc|ENSG00000213614|P06865-2|HEXA ENSG00000213614|ENST00000268097|HEXA ENSG00000213614|ENST00000268097|HEXA MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7989501953125 2 575.800217 1149.58588 1.0779 0.00062064 -1.167 -0.00067195 -0.089116 -5.1313E-05 575.7989830634957 99.363 0.24237 93.187 93.081 93.324 -6.1757 29 15 3 0 0 0 0.023761 1 66147 66147 59.795 34.396 1 44873000 68570 10446 45608 46631 80093 80093 0.01707217482703527 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2606811523438 2 530.260925 1058.5073 0.73795 0.00039131 -0.99411 -0.00052714 -0.25616 -0.00013583 530.2602768764465 49.912 0.40866 49.52 49.218 49.627 -0.3923 73 20 4 0 0 0 0.19127 1 26825 26825 24.021 3.5669 1 39089000 68571 3183 45609 46632 80094 80094 -0.019616348223962632 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.261474609375 2 530.260925 1058.5073 0.77305 0.00040992 -1.4611 -0.00077476 -0.68804 -0.00036484 530.2604698396174 50.199 0.24042 49.807 49.711 49.952 -0.3923 28 11 3 0 0 0 0.19127 1 27038 27038 24.021 2.2739 1 6924000 68572 3183 45609 46632 80095 80095 -0.019616348223962632 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2607421875 2 530.260925 1058.5073 0.81563 0.0004325 -1.6436 -0.00087151 -0.82793 -0.00043902 530.2598581128385 49.525 0.85735 49.476 49.129 49.986 -0.048824 98 42 3 0 0 0 0.06294 3 26721 26721;26824;26947 41.84 18.691 1 9003000 68573 3183 45609 46632 80096;80097;80098 80096 -0.019616348223962632 VFPDKGYSF 9 Unmodified _VFPDKGYSF_ 0 0 0 nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF nc|ENSG00000116001|P31483-2|TIA1 nc|ENSG00000116001|P31483-2|TIA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2612915039062 2 530.260925 1058.5073 0.94975 0.00050361 -0.24485 -0.00012984 0.70489 0.00037378 530.2608857930843 55.665 0.72457 49.744 49.3 50.024 -5.9211 114 43 3 0 0 0 0.07087 4 35319 35181;35319;35447;35567 39.95 18.203 1 253770000 68574 3183 45609 46632 80099;80100;80101;80102 80100 -0.019616348223962632 VFPEHLARF 9 Unmodified _VFPEHLARF_ 0 0 0 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 ENSG00000150457|ENST00000382592|LATS2 MSMS AL20221201_MKP_PDAC_01 4 372.5386657714844 3 372.538064 1114.59236 NaN NaN NaN NaN NaN NaN NaN 52.568 1 46.833 46.333 47.333 -5.7345 0 0 0 0.18978 1 33185 33185 32.037 21.238 1 68575 6056 45610 46633 80103 80103 0.03965155434070766 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2691040039062 2 537.26875 1072.52295 0.07886 4.2369E-05 0.52832 0.00028385 0.60718 0.00032622 537.2689015208526 48.898 0.95565 48.898 48.531 49.487 0 117 45 3 0 0 0 0.07916 3 26847 26731;26847;27075 37.974 9.4872 1 9054400 68576 6156 45611 46634 80104;80105;80106 80105 -0.010413483053298478 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2691040039062 2 537.26875 1072.52295 0.48419 0.00026014 0.19925 0.00010705 0.68345 0.00036719 537.2687795732053 49.297 1.2176 48.926 48.335 49.552 -0.37172 225 61 5 0 0 0 0.07916 4 26442 26336;26442;26652;26756 37.974 9.4795 1 140200000 68577 6156 45611 46634 80107;80108;80109;80110 80108 -0.010413483053298478 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2682495117188 2 537.26875 1072.52295 0.30419 0.00016343 0.11095 5.9613E-05 0.41514 0.00022304 537.2686793403135 48.969 0.98101 48.925 48.495 49.476 -0.04369 158 48 4 0 0 0 0.039985 4 26351 26351;26452;26559;26662 49.933 11.757 1 30356000 68578 6156 45611 46634 80111;80112;80113;80114 80111 -0.010413483053298478 VFPEKGYSF 9 Unmodified _VFPEKGYSF_ 0 0 0 ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF ENST00000497671.5_1_10:121335179-121339984:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2689819335938 2 537.26875 1072.52295 0.76511 0.00041107 0.06267 3.3671E-05 0.82778 0.00044474 537.268684032988 54.733 1.1235 48.868 48.266 49.389 -5.8653 272 69 5 0 0 0 0.06294 4 34494 34494;34775;34905;35041 41.84 13.353 1 880120000 68579 6156 45611 46634 80115;80116;80117;80118 80115 -0.010413483053298478 VFPFRTFYL 9 Unmodified _VFPFRTFYL_ 0 0 0 ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8247680664062 2 595.32386 1188.63317 0.13553 8.0683E-05 0.10692 6.3653E-05 0.24245 0.00014434 595.3241804986856 89.232 0.35657 89.28 89.101 89.458 0.047859 37 12 4 0 0 0 0.036857 2 49595 49595;49704 51.63 26.23 1 38833000 68580 1021 45612 46635 80119;80120 80119 0.04639496753725325 VFPFRTFYL 9 Unmodified _VFPFRTFYL_ 0 0 0 ENSG00000070190|ENST00000512369|DAPP1;ENST00000514301.1_1_4:100787149-100789339:+|nuORF;nc|ENSG00000070190|Q9UN19-2|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 ENSG00000070190|ENST00000512369|DAPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3278198242188 2 595.32386 1188.63317 0.56857 0.00033849 0.92977 0.00055351 1.4983 0.000892 595.3247344387783 99.49 0.1525 93.314 93.228 93.38 -6.1757 33 9 4 0 0 0 0.036857 1 66234 66234 51.63 26.23 1 398040000 68581 1021 45612 46635 80121 80121 0.04639496753725325 VFPGASHNRF 10 Unmodified _VFPGASHNRF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.1767272949219 3 377.861319 1130.56213 NaN NaN NaN NaN NaN NaN NaN 28.683 1 28.712 28.212 29.212 0.029564 0 0 0 0.91092 1 14940 14940 7.4771 4.1574 1 68582 1951 45613 46636 80122 80122 0.0020679676890722476 VFPGASHNRF 10 Unmodified _VFPGASHNRF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8613586425781 3 377.861319 1130.56213 NaN NaN NaN NaN NaN NaN NaN 28.844 1 28.874 28.374 29.374 0.030106 0 0 0 0.34963 1 15029 15029 34.222 20.607 1 68583 1951 45613 46636 80123 80123 0.0020679676890722476 VFPGASHNRF 10 Unmodified _VFPGASHNRF_ 0 0 0 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8617553710938 3 377.861319 1130.56213 1.5761 0.00059556 -0.98571 -0.00037246 0.59044 0.0002231 377.8614481229759 32.371 0.31458 28.515 28.268 28.582 -3.8562 30 18 2 0 0 0 0.32533 1 18428 18428 25.997 19.806 1 11765000 68584 1951 45613 46636 80124 80124 0.0020679676890722476 VFPGHPVQF 9 Unmodified _VFPGHPVQF_ 0 0 0 nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 nc|ENSG00000138443|Q9NYB9-3|ABI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2720947265625 2 514.271627 1026.5287 0.34996 0.00017998 0.0052041 2.6763E-06 0.35517 0.00018265 514.2714380944724 51.792 0.63246 51.733 51.455 52.087 -0.058918 41 30 2 0 0 0 0.14602 1 27993 27993 28.487 15.955 1 1359500 68585 13392 45614 46637 80125 80125 0.016497949970016634 VFPKEPVEL 9 Unmodified _VFPKEPVEL_ 0 0 0 ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF ENSG00000231389|ENST00000419277|HLA-DPA1 ENSG00000231389|ENST00000419277|HLA-DPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.80078125 2 529.30005 1056.58555 1.1095 0.00058725 1.4156 0.00074929 2.5251 0.0013365 529.301234548916 61.056 0.52591 54.909 54.63 55.156 -6.1478 46 27 2 0 0 0 0.014417 2 39234 39234;39369 69.105 42.221 1 41970000 68586 10618 45615 46638 80126;80127 80126 0.059517977628502194 VFPKPLITRF 10 Unmodified _VFPKPLITRF_ 0 0 0 nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1 nc|ENSG00000099250|O14786-3|NRP1 nc|ENSG00000099250|O14786-3|NRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.5858154296875 3 406.585015 1216.73321 0.14475 5.8851E-05 0.33776 0.00013733 0.4825 0.00019618 406.91956348285015 59.212 0.20203 59.158 59.011 59.213 -0.053062 26 9 3 0 0 0 0.32533 1 32240 32240 25.997 15.847 1 4724900 68587 1689 45616 46639 80128 80128 0.1335173408749597 VFPKPLITRF 10 Unmodified _VFPKPLITRF_ 0 0 0 nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1 nc|ENSG00000099250|O14786-3|NRP1 nc|ENSG00000099250|O14786-3|NRP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.2486267089844 3 406.585015 1216.73321 1.1662 0.00047415 -0.43346 -0.00017624 0.73272 0.00029791 406.584828629261 87.252 0.48296 81.077 80.699 81.182 -6.1757 30 26 2 0 0 0 0.19043 1 57337 57337 30.431 23.394 1 11294000 68588 1689 45616 46639 80129 80129 0.1335173408749597 VFPLCFQSR 9 Unmodified _VFPLCFQSR_ 0 0 0 ENST00000317126.8_1_10:73976810-73976879:-|nuORF ENST00000317126.8_1_10:73976810-73976879:-|nuORF ENST00000317126.8_1_10:73976810-73976879:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.783447265625 2 548.784044 1095.55354 0.23999 0.0001317 -0.35137 -0.00019283 -0.11138 -6.1122E-05 548.7831431749682 39.051 0.18756 39.062 38.941 39.129 0.011452 13 8 2 0 0 0 0.49272 1 20783 20783 7.9102 0 1 1113100 68589 11745 45617 46640 80130 80130 0.009581068080706245 VFPLKNSYE 9 Unmodified _VFPLKNSYE_ 0 0 0 REV__ENST00000393104.6_1_10:112658074-112658122:+|nuORF REV__ENST00000393104.6_1_10:112658074-112658122:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.786376953125 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 47.842 1 47.803 47.303 48.303 -0.038643 0 0 0 0.58748 1 25787 25787 13.042 0.51092 1 + 68590 26414 45618 46641 80131 80131 0.016103232404248047 VFPRLHNVLF 10 Unmodified _VFPRLHNVLF_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5765991210938 3 414.576631 1240.70806 0.4324 0.00017926 0.38812 0.0001609 0.82052 0.00034017 414.57675956201683 65.068 0.34601 65.068 64.895 65.241 7.6294E-06 55 16 5 0 0 0 0.33553 2 35729 35621;35729 16.566 11.85 1 36225000 68591 4738 45619 46642 80132;80133 80133 0.09733679284931895 VFPRLHNVLF 10 Unmodified _VFPRLHNVLF_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.36279296875 2 621.361308 1240.70806 0.80489 0.00050013 0.34535 0.00021459 1.1502 0.00071472 621.3614710452061 65.067 0.24353 65.067 64.956 65.2 7.6294E-06 27 11 3 0 0 0 0.0575 1 35659 35659 56.177 39.064 1 6008400 68592 4738 45619 46642 80134 80134 0.09733679284931895 VFPRLHNVLF 10 Unmodified _VFPRLHNVLF_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.5772705078125 3 414.576631 1240.70806 1.2988 0.00053844 0.50072 0.00020759 1.7995 0.00074603 414.57670278749896 95.102 0.48662 88.926 88.693 89.18 -6.1757 81 26 4 0 0 0 0.16524 2 62897 62897;63014 32.037 26.635 1 36688000 68593 4738 45619 46642 80135;80136 80135 0.09733679284931895 VFPRLHNVLF 10 Unmodified _VFPRLHNVLF_ 0 0 0 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 ENSG00000135763|ENST00000258243|URB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.3629150390625 2 621.361308 1240.70806 0.83281 0.00051748 0.052828 3.2825E-05 0.88564 0.0005503 621.3615321476233 95.096 0.4094 88.921 88.711 89.12 -6.1757 51 22 3 0 0 0 0.024115 2 62935 62935;63064 71.922 45.654 1 12235000 68594 4738 45619 46642 80137;80138 80137 0.09733679284931895 VFPSMPIKLQL 11 Unmodified _VFPSMPIKLQL_ 0 0 0 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 ENSG00000128915|ENST00000261520|ICE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.873046875 2 636.872859 1271.73117 -0.18859 -0.00012011 0.97377 0.00062017 0.78518 0.00050006 636.8731606936832 98.866 0.14983 92.69 92.615 92.764 -6.1757 24 11 3 0 0 0 0.00013798 1 65636 65636 92.653 62.017 1 102830000 68595 4099 45620 46643 80139 80139 0.106169372874092 VFPSPWSSL 9 Unmodified _VFPSPWSSL_ 0 0 0 ENST00000534971.1_1_11:71733276-71735881:-|nuORF ENST00000534971.1_1_11:71733276-71735881:-|nuORF ENST00000534971.1_1_11:71733276-71735881:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.2649230957031 2 510.263468 1018.51238 -0.019138 -9.7654E-06 -0.10696 -5.4579E-05 -0.1261 -6.4345E-05 510.26346635553915 98.814 0.18193 92.638 92.52 92.702 -6.1757 23 13 2 0 0 0 0.11012 1 65527 65527 28.487 0 1 61108000 68596 14961 45621 46644 80140 80140 0.003866690402333006 VFPSYYEPWG 10 Unmodified _VFPSYYEPWG_ 0 0 0 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000104812|ENST00000323798|GYS1;ENSG00000111713|ENST00000261195|GYS2 nc|ENSG00000104812|P13807-2|GYS1;ENSG00000111713|ENST00000261195|GYS2 nc|ENSG00000104812|P13807-2|GYS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.5257873535156 3 415.525602 1243.55498 0.45891 0.00019069 -0.54482 -0.00022639 -0.085916 -3.57E-05 415.85946774285134 62.997 0.19925 62.511 62.423 62.622 -0.48617 13 9 2 0 0 0 0.69377 1 34360 34360 1.7423 0 1 3537300 68597 2237;2820 45622 46645 80141 80141 -0.05705980622201423 VFPTHNFISF 10 Unmodified _VFPTHNFISF_ 0 0 0 ENST00000375140.7_1_11:119061011-119064134:-|nuORF ENST00000375140.7_1_11:119061011-119064134:-|nuORF ENST00000375140.7_1_11:119061011-119064134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.8096923828125 2 604.808574 1207.60259 0.26787 0.00016201 1.8478 0.0011176 2.1157 0.0012796 604.8096877702594 61.076 0.37354 61.032 60.866 61.239 -0.04351 41 18 4 0 0 0 0.38026 1 33295 33295 20.415 3.3016 1 16767000 68598 12470 45623 46646 80142 80142 0.007097183686710196 VFPTRTARF 9 Unmodified _VFPTRTARF_ 0 0 0 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5412902832031 3 365.541697 1093.60326 -0.10426 -3.8112E-05 0.50335 0.000184 0.39909 0.00014588 365.54187296479336 32.973 0.5539 33.003 32.721 33.274 0.029747 86 24 5 0 0 0 0.11005 2 17236 17236;17336 32.037 9.3012 1 73226000 68599 10428 45624 46647 80143;80144 80143 0.060205578083468936 VFPTRTARF 9 Unmodified _VFPTRTARF_ 0 0 0 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 ENSG00000213339|ENST00000250237|QTRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5420227050781 3 365.541697 1093.60326 1.736 0.00063456 -0.34507 -0.00012614 1.3909 0.00050843 365.5415355295555 36.956 0.80777 32.672 32.388 33.196 -4.2835 155 48 5 0 0 0 0.171 2 21684 21557;21684 26.021 8.9078 1 357090000 68600 10428 45624 46647 80145;80146 80146 0.060205578083468936 VFQAGLVNLLF 11 Unmodified _VFQAGLVNLLF_ 0 0 0 ENST00000534963.5_1_11:61131784-61133703:+|nuORF;nc|ENSG00000149483|Q9NPI0-2|TMEM138;ENSG00000149483|ENST00000278826|TMEM138;nc|ENSG00000149483|Q9NPI0-3|TMEM138;ENST00000507563.6_1_11:61131784-61135625:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF ENST00000534963.5_1_11:61131784-61133703:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.8558349609375 2 610.855524 1219.69649 0.64817 0.00039594 -2.4235 -0.0014804 -1.7753 -0.0010845 611.3549901651786 101.92 0.079987 95.744 95.7 95.78 -6.1757 5 3 2 0 0 0 0.13715 1 68434 68434 38.176 16.639 1 4900100 68601 6011 45625 46648 80147 80147 0.09543437470938443 VFQDRQYQI 9 Unmodified _VFQDRQYQI_ 0 0 0 nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000139842|ENST00000375440|CUL4A nc|ENSG00000158290|Q13620-3|CUL4B MSMS AL20221201_MKP_PDAC_01 4 598.8067626953125 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 45.471 1 40.516 40.016 41.016 -4.9549 0 0 0 0.022544 1 27920 27920 114.2 64.269 1 68602 6576;5194 45626 46649 80148 80148 0.008596288749458836 VFQEAANLF 9 Unmodified _VFQEAANLF_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36;ENST00000480709.1_1_2:219554611-219557045:+|nuORF nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7674560546875 2 519.766374 1037.5182 2.1806 0.0011334 -0.07477 -3.8863E-05 2.1058 0.0010945 519.7662924105276 95.693 0.43193 95.697 95.46 95.892 0.004158 35 16 3 0 0 0 0.10734 1 53148 53148 32.305 9.1571 1 5318200 68603 7000 45627 46650 80149 80149 0.0009376755187986419 VFQEHQTL 8 Unmodified _VFQEHQTL_ 0 0 0 nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF nc|ENSG00000085733|Q14247-3|CTTN nc|ENSG00000085733|Q14247-3|CTTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.25537109375 2 501.256174 1000.49779 NaN NaN NaN NaN NaN NaN NaN 29.574 1 29.574 29.074 30.074 0 0 0 0 0.69365 1 15324 15324 28.487 2.1456 1 68604 1415 45628 46651 80150 80150 -0.0024340310790194053 VFQKQFYRL 9 Unmodified _VFQKQFYRL_ 0 0 0 ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF ENSG00000143669|ENST00000389793|LYST ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2326965332031 3 410.232752 1227.67643 0.35424 0.00014532 0.14001 5.7435E-05 0.49424 0.00020275 410.23288320047993 43.037 0.19154 43.021 42.912 43.104 -0.015667 13 8 2 0 0 0 0.025842 1 23072 23072 57.722 35.064 1 5359700 68605 5543 45629 46652 80151 80151 0.07169686530983199 VFQMNLMT 8 Unmodified _VFQMNLMT_ 0 0 0 REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF REV__ENST00000512983.5_1_4:156617950-156632415:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.1996154785156 2 492.238081 982.461609 -0.41525 -0.0002044 -2.9289 -0.0014417 -3.3442 -0.0016461 492.23674985149694 26.307 0.17789 26.307 26.208 26.386 0 10 8 2 0 0 0 8.7369 1 13476 13476 7.2892 0.93513 1 609490 + 68606 21873 45630 46653 80152 80152 -0.030323196006179387 VFQNFPLLF 9 Unmodified _VFQNFPLLF_ 0 0 0 ENST00000393543.7_1_12:68720268-68720871:-|nuORF;nc|ENSG00000111554|Q8TC05-2|MDM1 ENST00000393543.7_1_12:68720268-68720871:-|nuORF ENST00000393543.7_1_12:68720268-68720871:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 562.8106079101562 2 562.810585 1123.60662 NaN NaN NaN NaN NaN NaN NaN 101.79 1 95.61 95.11 96.11 -6.1757 0 0 0 0.059498 1 68323 68323 70.716 28.621 1 68607 12705 45631 46654 80153 80153 0.049758078623654 VFQRVVAIF 9 Unmodified _VFQRVVAIF_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.300537109375 2 539.824027 1077.6335 0.33742 0.00018215 -0.82269 -0.00044411 -0.48527 -0.00026196 539.8239330273051 69.6 0.21136 69.631 69.554 69.765 0.030914 20 10 3 0 0 0 0.094631 1 38269 38269 39.957 19.086 1 2794600 68608 5735 45632 46655 80154 80154 0.0977891647355591 VFQSYQLW 8 Unmodified _VFQSYQLW_ 0 0 0 ENSG00000249961|ENST00000433154|TERB1;nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1 ENSG00000249961|ENST00000433154|TERB1 ENSG00000249961|ENST00000433154|TERB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.233154296875 2 535.768917 1069.52328 2.2354 0.0011977 0.25059 0.00013426 2.486 0.0013319 535.7689026125387 95.949 0.23962 95.953 95.79 96.03 0.0041504 17 8 3 0 0 0 8.7369 1 53242 53242 6.3541 1.1234 1 1358400 68609 10749 45633 46656 80155 80155 -0.00869928585461821 VFQYEHIL 8 Unmodified _VFQYEHIL_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10 ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7752685546875 2 524.776742 1047.53893 1.4058 0.00073773 -3.743 -0.0019642 -2.3372 -0.0012265 524.7744109933211 88.103 0.2076 81.927 81.889 82.096 -6.1757 14 11 2 0 0 0 0.50586 1 58119 58119 34.187 5.7005 1 14213000 68610 5706 45634 46657 80156 80156 0.01706357931561797 VFRISHRSYTF 11 Unmodified _VFRISHRSYTF_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.377685546875 2 706.875311 1411.73607 0.29858 0.00021106 0.68683 0.0004855 0.98541 0.00069656 706.8759081565854 76.188 0.35783 76.236 76.063 76.421 0.047943 36 14 3 0 0 0 0.59689 2 42018 42018;42129 11.495 0.67078 1 13948000 68611 6169 45635 46658 80157;80158 80157 0.04666957474364608 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8055419921875 2 600.806031 1199.59751 0.19728 0.00011853 0.47408 0.00028483 0.67137 0.00040336 600.8065625157807 78.327 0.3759 78.38 78.249 78.625 0.052452 27 15 2 0 0 0 0.036857 2 43233 43233;43340 51.63 34.688 1 48448000 68612 1093;7444 45636 46659 80159;80160 80159 0.005694145060488154 VFRLQFDEF 9 Unmodified _VFRLQFDEF_ 0 0 0 nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000166167|Q9Y297-2|BTRC nc|ENSG00000072803|Q9UKB1-2|FBXW11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8072509765625 2 600.806031 1199.59751 0.58689 0.00035261 0.57717 0.00034677 1.1641 0.00069937 600.8063733254013 95.952 0.34308 89.776 89.601 89.944 -6.1757 39 20 2 0 0 0 2.1289E-06 2 63493 63493;63614 158.2 125.9 1 240600000 68613 1093;7444 45636 46659 80161;80162 80161 0.005694145060488154 VFRQCTSKFN 10 Unmodified _VFRQCTSKFN_ 0 0 0 REV__ENSG00000181610|ENST00000313608|MRPS23 REV__ENSG00000181610|ENST00000313608|MRPS23 MSMS AL20221201_MKP_PDAC_01 4 410.54052734375 3 410.541369 1228.60228 NaN NaN NaN NaN NaN NaN NaN 14.671 1 12.168 11.668 12.668 -2.5029 0 0 0 0.97784 1 7468 7468 3.0723 0 1 + 68614 23214 45637 46660 80163 80163 -0.0028802462281873886 VFRQLDKCSI 10 Unmodified _VFRQLDKCSI_ 0 0 0 ENST00000551367.5_1_21:37741970-37758388:+|nuORF;ENST00000547657.1_1_21:37741970-37758388:+|nuORF;ENSG00000159256|ENST00000400485|MORC3 ENST00000551367.5_1_21:37741970-37758388:+|nuORF ENST00000551367.5_1_21:37741970-37758388:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.5545654296875 3 403.553386 1207.63833 NaN NaN NaN NaN NaN NaN NaN 1.7692 1 1.6972 1.1972 2.1972 -0.072029 0 0 0 1.0024 1 883 883 0.13989 0 1 68615 6640 45638 46661 80164 80164 0.042814325540348364 VFRQLDKCSI 10 Unmodified _VFRQLDKCSI_ 0 0 0 ENST00000551367.5_1_21:37741970-37758388:+|nuORF;ENST00000547657.1_1_21:37741970-37758388:+|nuORF;ENSG00000159256|ENST00000400485|MORC3 ENST00000551367.5_1_21:37741970-37758388:+|nuORF ENST00000551367.5_1_21:37741970-37758388:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.5543823242188 3 403.553386 1207.63833 NaN NaN NaN NaN NaN NaN NaN 2.125 1 2.108 1.608 2.608 -0.017019 0 0 0 1.0024 1 1086 1086 0.13989 0 1 68616 6640 45638 46661 80165 80165 0.042814325540348364 VFRQYWDI 8 Unmodified _VFRQYWDI_ 0 0 0 ENSG00000174886|ENST00000308961|NDUFA11;nc|ENSG00000174886|Q86Y39-2|NDUFA11;ENST00000591160.1_1_19:5902597-5903854:-|nuORF ENSG00000174886|ENST00000308961|NDUFA11 ENSG00000174886|ENST00000308961|NDUFA11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1929626464844 3 376.194186 1125.56073 NaN NaN NaN NaN NaN NaN NaN 29.933 1 29.933 29.433 30.433 0 0 0 0 0.97444 1 15529 15529 2.9952 0 1 68617 8466 45639 46662 80166 80166 0.0029716268013544322 VFRRASASFK 10 Unmodified _VFRRASASFK_ 0 0 0 REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF REV__ENST00000375664.8_2_10:28908866-28909124:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2236328125 3 390.224368 1167.65128 NaN NaN NaN NaN NaN NaN NaN 29.494 1 29.413 28.913 29.913 -0.080429 0 0 0 0.78689 1 15264 15264 12.873 1.9736 1 + 68618 26210 45640 46663 80167 80167 0.07415631728417793 VFRSSPQF 8 Unmodified _VFRSSPQF_ 0 0 0 ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12;ENST00000472070.1_1_2:172641786-172644464:-|nuORF;ENSG00000004864|ENST00000265631|SLC25A13;nc|ENSG00000004864|Q9UJS0-2|SLC25A13 ENSG00000115840|ENST00000422440|SLC25A12;ENSG00000004864|ENST00000265631|SLC25A13 ENSG00000115840|ENST00000422440|SLC25A12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7887268066406 2 484.253434 966.492316 -0.10182 -4.9307E-05 0.22277 0.00010788 0.12095 5.857E-05 484.25313585650747 36.532 0.24767 36.554 36.414 36.661 0.021545 21 11 2 0 0 0 8.7369 1 19311 19311 10.824 1.4765 1 6013400 68619 3168;288 45641 46664 80168 80168 0.007729181002900987 VFRTDLITAM 10 Oxidation (M) _VFRTDLITAM(Oxidation (M))_ VFRTDLITAM(1) VFRTDLITAM(44) 0 0 1 nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2;JADE2|p.F357Lfs*34|1|0.26|ENSG00000043143|chr5:134566217-134566217|C/-|frameshift_variant;ENSG00000077684|ENST00000226319|JADE1;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 nc|ENSG00000043143|Q9NQC1-3|JADE2;ENSG00000077684|ENST00000226319|JADE1 nc|ENSG00000043143|Q9NQC1-3|JADE2 MSMS AL20221201_MKP_PDAC_01 4 591.8118286132812 2 591.812999 1181.61144 NaN NaN NaN NaN NaN NaN NaN 87.11 1 80.934 80.434 81.434 -6.1757 0 0 0 0.19159 1 57428 57428 43.772 17.504 1 68620 669;1224 45642 46665 80169 80169 101 0.027903239428269444 VFRTRCHL 8 Unmodified _VFRTRCHL_ 0 0 0 ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 ENSG00000028839|ENST00000237264|TBPL1 MSMS AL20221201_MKP_PDAC_01 4 516.2804565429688 2 516.282003 1030.54945 NaN NaN NaN NaN NaN NaN NaN 67.364 1 61.189 60.689 61.689 -6.1757 0 0 0 0.88073 1 43877 43877 19.439 1.304 1 68621 575 45643 46666 80170 80170 0.03540062105003017 VFRWHEHFRYY 11 Unmodified _VFRWHEHFRYY_ 0 0 0 REV__nc|ENSG00000211460|Q15631-2|TSN REV__nc|ENSG00000211460|Q15631-2|TSN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 820.39990234375 2 820.399484 1638.78442 NaN NaN NaN NaN NaN NaN NaN 109.53 1 109.48 108.98 109.98 -0.047607 0 0 0 0.9435 1 60634 60634 0 0 1 + 68622 24264 45644 46667 80171 80171 -0.009425488857232267 VFSFGSRWS 9 Unmodified _VFSFGSRWS_ 0 0 0 REV__CHST4|p.S55F|1|0.07|ENSG00000140835|chr16:71536841-71536841|C/T|missense_variant REV__CHST4|p.S55F|1|0.07|ENSG00000140835|chr16:71536841-71536841|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1786499023438 3 358.178536 1071.51378 -0.19333 -6.9248E-05 0.37116 0.00013294 0.17783 6.3694E-05 358.1786569125346 32.465 0.35583 32.336 32.149 32.505 -0.12915 49 15 4 0 0 0 0.44883 1 16853 16853 10.151 1.1743 1 48469000 + 68623 16821 45645 46668 80172 80172 -0.0191169687097954 VFSHKNMEL 9 Unmodified _VFSHKNMEL_ 0 0 0 ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK ENSG00000142892|ENST00000370812|PIGK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.3289184570312 2 552.778959 1103.54336 0.38565 0.00021318 1.6729 0.00092476 2.0586 0.0011379 552.7791645821169 99.045 0.16678 92.869 92.807 92.974 -6.1757 12 9 2 0 0 0 0.1474 1 65930 65930 28.487 11.545 1 26513000 68624 5450 45646 46669 80173 80173 -0.00426500917183148 VFSHRFYKL 9 Unmodified _VFSHRFYKL_ 0 0 0 ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11;ENST00000469080.5_1_X:47092634-47106681:+|nuORF ENSG00000102226|ENST00000377107|USP11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2500305175781 3 399.557348 1195.65021 -0.1187 -4.7429E-05 -0.91711 -0.00036644 -1.0358 -0.00041387 399.5569835736753 33.468 0.2426 33.497 33.361 33.604 0.028931 22 10 3 0 0 0 0.19994 1 17592 17592 12.241 5.1389 1 4214400 68625 2029;13824 45647 46670 80174 80174 0.06021417359511361 VFSPAPYHHL 10 Unmodified _VFSPAPYHHL_ 0 0 0 nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENSG00000174373|ENST00000680220|RALGAPA1;THUMPD2-RALGAPA1|1|fusion;THUMPD2-RALGAPA1|2|fusion;ENST00000443361.1_1_9:108287470-108288637:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8700561523438 3 389.869703 1166.58728 -0.34723 -0.00013538 0.67928 0.00026483 0.33205 0.00012946 389.87005828001037 36.608 0.18758 36.63 36.58 36.767 0.021545 12 8 2 0 0 0 0.32072 1 19419 19419 26.268 21.371 1 3403700 68626 8416;13422 45648 46671 80175 80175 0.01064851571481995 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 371.182373046875 3 371.182169 1110.52468 -0.26668 -9.8985E-05 0.96996 0.00036003 0.70329 0.00026105 371.1824733950047 34.077 0.35596 33.886 33.718 34.074 -0.19131 45 13 5 0 0 0 0.19662 1 17800 17800 28.495 25.175 1 18825000 68627 12510 45649 46672 80176 80176 -0.026162944967154544 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2705688476562 2 556.269616 1110.52468 -0.050295 -2.7978E-05 1.8659 0.001038 1.8156 0.00101 556.2707443316111 34.075 0.20226 33.884 33.795 33.998 -0.19132 11 7 2 0 0 0 0.42068 1 17807 17807 20.454 14.693 1 946300 68628 12510 45649 46672 80177 80177 -0.026162944967154544 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.1824035644531 3 371.182169 1110.52468 0.068747 2.5518E-05 0.68499 0.00025426 0.75374 0.00027978 371.18235739887416 33.841 0.41048 33.87 33.604 34.014 0.028934 60 17 5 0 0 0 0.14917 1 17770 17770 33.445 21.27 1 47001000 68629 12510 45649 46672 80178 80178 -0.026162944967154544 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.270263671875 2 556.269616 1110.52468 0.33432 0.00018597 0.8647 0.00048101 1.199 0.00066698 556.2700346193596 33.838 0.21109 33.867 33.72 33.931 0.028934 19 8 3 0 0 0 0.0044003 1 17787 17787 100.37 64.327 1 2982000 68630 12510 45649 46672 80179 80179 -0.026162944967154544 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.1822204589844 3 371.182169 1110.52468 1.644 0.00061021 -0.36941 -0.00013712 1.2746 0.00047309 371.1819657136639 37.975 0.3987 33.606 33.381 33.78 -4.3689 82 23 4 0 0 0 0.16524 2 22258 22258;22385 34.932 30.403 1 123500000 68631 12510 45649 46672 80180;80181 80180 -0.026162944967154544 VFSPHGSPHF 10 Unmodified _VFSPHGSPHF_ 0 0 0 ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF ENST00000376851.7_1_19:51471875-51472205:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2699584960938 2 556.269616 1110.52468 1.1657 0.00064844 -0.4937 -0.00027463 0.67199 0.00037381 556.2690191926364 37.995 0.38428 33.626 33.381 33.765 -4.3689 47 22 3 0 0 0 2.5391E-11 2 22270 22270;22402 164.52 124.56 1 23470000 68632 12510 45649 46672 80182;80183 80182 -0.026162944967154544 VFSPVTNKT 9 Unmodified _VFSPVTNKT_ 0 0 0 ENST00000506919.1_1_4:146560261-146567442:+|nuORF ENST00000506919.1_1_4:146560261-146567442:+|nuORF ENST00000506919.1_1_4:146560261-146567442:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5248413085938 1 992.541123 991.533846 0.24866 0.00024681 -2.2448 -0.0022281 -1.9961 -0.0019813 992.5390715873758 99.738 0.21687 93.562 93.46 93.677 -6.1757 22 14 2 0 0 0 0.19127 1 66489 66489 24.021 2.2739 1 20617000 68633 14531 45650 46673 80184 80184 0.037740540689469526 VFSSPVTDRE 10 Unmodified _VFSSPVTDRE_ 0 0 0 nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C;ENSG00000224960|ENST00000412172|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7817993164062 2 568.782753 1135.55095 0.48486 0.00027578 0.045291 2.576E-05 0.53015 0.00030154 569.284449942875 66.42 0.23045 66.42 66.281 66.512 0 16 9 2 0 0 0 0.62068 1 37030 37030 10.074 1.9184 1 1228600 68634 10581 45651 46674 80185 80185 -0.011400701159118398 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7951049804688 2 524.794935 1047.57532 NaN NaN NaN NaN NaN NaN NaN 75.348 1 74.871 74.371 75.371 -0.47714 0 0 0 0.57317 1 41245 41245 13.508 8.2772 1 68635 2944 45652 46675 80186 80186 0.05343234828274035 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7952880859375 2 524.794935 1047.57532 0.20936 0.00010987 0.43959 0.00023069 0.64895 0.00034057 524.7950836701855 74.758 0.6767 74.804 74.547 75.224 0.045967 105 31 5 0 0 0 0.0081063 3 41212 41116;41212;41323 93.883 59.202 1 192890000 68636 2944 45652 46675 80187;80188;80189 80188 0.05343234828274035 VFSTVVIHF 9 Unmodified _VFSTVVIHF_ 0 0 0 nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR nc|ENSG00000113161|P04035-2|HMGCR nc|ENSG00000113161|P04035-2|HMGCR MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7955322265625 2 524.794935 1047.57532 1.2078 0.00063384 -0.42067 -0.00022076 0.78712 0.00041308 524.7948806477061 89.15 1.2629 82.974 82.189 83.452 -6.1757 134 70 2 0 0 0 0.0081063 6 58698 58453;58578;58698;58831;58955;59096 93.883 59.781 1 153030000 68637 2944 45652 46675 80190;80191;80192;80193;80194;80195 80192 0.05343234828274035 VFTAFTEEF 9 Unmodified _VFTAFTEEF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7577514648438 2 545.758215 1089.50188 0.23779 0.00012977 0.60745 0.00033152 0.84524 0.0004613 545.7586868332612 79.79 0.32288 79.79 79.588 79.911 0 25 13 2 0 0 0 0.48152 1 44269 44269 8.5933 2.2392 1 1032900 68638 402 45653 46676 80196 80196 -0.03929358404866434 VFTAFTEEF 9 Unmodified _VFTAFTEEF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7581787109375 2 545.758215 1089.50188 0.73595 0.00040165 -0.7419 -0.0004049 -0.0059545 -3.2497E-06 545.7587323376987 80.254 0.37033 79.764 79.587 79.957 -0.48932 36 14 3 0 0 0 0.37804 1 43912 43912 13.508 3.3245 1 2738100 68639 402 45653 46676 80197 80197 -0.03929358404866434 VFTAFTEEF 9 Unmodified _VFTAFTEEF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.758056640625 2 545.758215 1089.50188 1.2327 0.00067275 -0.93748 -0.00051164 0.29521 0.00016112 545.7577644752104 88.043 0.43965 81.867 81.673 82.113 -6.1757 42 24 2 0 0 0 0.052168 1 58041 58041 44.407 21.259 1 17732000 68640 402 45653 46676 80198 80198 -0.03929358404866434 VFTARYLDL 9 Unmodified _VFTARYLDL_ 0 0 0 ENSG00000105438|ENST00000330720|KDELR1;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENST00000594643.1_1_19:48893647-48894615:-|nuORF ENSG00000105438|ENST00000330720|KDELR1 ENSG00000105438|ENST00000330720|KDELR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5373840332031 3 366.537842 1096.5917 0.64424 0.00023614 -1.3682 -0.00050151 -0.72399 -0.00026537 366.5375647609642 46.322 0.20859 46.322 46.252 46.461 0 12 9 2 0 0 0 0.30562 1 25336 25336 16.149 0 1 2072300 68641 2322 45654 46677 80199 80199 0.04726315994366814 VFTDLCVYF 9 Carbamidomethyl (C) _VFTDLC(Carbamidomethyl (C))VYF_ VFTDLC(1)VYF VFTDLC(64)VYF 0 1 0 ENSG00000164615|ENST00000297156|CAMLG ENSG00000164615|ENST00000297156|CAMLG ENSG00000164615|ENST00000297156|CAMLG MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2764282226562 2 582.275718 1162.53688 1.0449 0.00060842 -1.2567 -0.00073173 -0.21178 -0.00012332 582.275899881837 99.994 0.16884 93.818 93.755 93.924 -6.1757 42 11 5 0 0 0 0.019979 1 66762 66762 63.563 36.679 1 91278000 68642 7215 45655 46678 80200 80200 706 -0.037884388685597514 VFTDMKRAF 9 Unmodified _VFTDMKRAF_ 0 0 0 REV__ENSG00000071189|ENST00000428135|SNX13 REV__ENSG00000071189|ENST00000428135|SNX13 MSMS AL20221201_MKP_PDAC_01 4 557.736572265625 2 557.789327 1113.5641 NaN NaN NaN NaN NaN NaN NaN 45.517 1 40.562 40.062 41.062 -4.9549 0 0 0 0.70111 1 27955 27955 9.3474 0 1 + 68643 17491 45656 46679 80201 80201 0.01186089462498785 VFTEEEEEE 9 Unmodified _VFTEEEEEE_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8250427246094 3 380.824153 1139.45063 1.7629 0.00067137 0.11133 4.2398E-05 1.8743 0.00071377 380.82447485857654 87.995 0.21384 81.82 81.693 81.907 -6.1757 15 11 2 0 0 0 0.4887 1 58049 58049 8.1555 1.0538 1 8084800 68644 9779 45657 46680 80202 80202 -0.11351771960221413 VFTEERARF 9 Unmodified _VFTEERARF_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000580878.1_1_19:40741997-40745051:-|nuORF;ENST00000483166.5_1_19:40743617-40745051:-|nuORF;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.5392150878906 3 385.536612 1153.58801 0.34104 0.00013148 1.9922 0.00076807 2.3332 0.00089955 385.5374460184959 31.146 0.27023 31.044 30.839 31.109 -0.10269 16 10 2 0 0 0 0.56345 1 16135 16135 2.086 0.87118 1 1678500 68645 2289;14067 45658 46681 80203 80203 0.017356462205270873 VFTEERARF 9 Unmodified _VFTEERARF_ 0 0 0 nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2;ENST00000580878.1_1_19:40741997-40745051:-|nuORF;ENST00000483166.5_1_19:40743617-40745051:-|nuORF;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2;ENST00000480878.6_1_19:40741944-40744877:-|nuORF nc|ENSG00000105221|P31751-2|AKT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 385.536612 1153.58801 -0.115 -4.4337E-05 1.2632 0.00048702 1.1482 0.00044268 385.5370541640855 31.122 0.12094 31.122 31.031 31.152 0 0.039313 -8.726E-05 NaN 2.086 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 824940 68646 2289;14067 45658 46681 0.017356462205270873 VFTEHPLLPFY 11 Unmodified _VFTEHPLLPFY_ 0 0 0 nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3;ENST00000425141.5_1_2:220498093-220506447:+|nuORF nc|ENSG00000114923|P48751-2|SLC4A3 nc|ENSG00000114923|P48751-2|SLC4A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 681.8565063476562 2 681.858264 1361.70197 0.11063 7.5432E-05 -1.7533 -0.0011955 -1.6427 -0.0011201 681.8568652924756 51.141 0.21957 50.728 50.597 50.817 -0.41351 18 10 2 0 0 0 0.67922 1 27568 27568 6.2058 0.9089 1 2019000 68647 3073 45659 46682 80204 80204 0.0355911626274974 VFTEVANLF 9 Unmodified _VFTEVANLF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.277099609375 2 520.276575 1038.5386 0.38048 0.00019795 0.51197 0.00026636 0.89244 0.00046432 520.2768113388549 88.096 0.445 87.591 87.36 87.805 -0.50423 57 20 4 0 0 0 0.03327 2 48136 48136;48239 53.576 35.441 1 7819900 68648 4014 45660 46683 80205;80206 80205 0.020869382116870838 VFTEVANLF 9 Unmodified _VFTEVANLF_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182-3|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7561645507812 2 520.276575 1038.5386 -0.1024 -5.3275E-05 0.73437 0.00038208 0.63197 0.0003288 520.2768125992634 87.539 0.22107 87.593 87.525 87.746 0.053352 17 9 3 0 0 0 0.0091495 1 48666 48666 104.8 33.666 1 20811000 68649 4014 45660 46683 80207 80207 0.020869382116870838 VFTGALFP 8 Unmodified _VFTGALFP_ 0 0 0 REV__ENST00000564312.1_1_16:34720304-34720595:-|nuORF REV__ENST00000564312.1_1_16:34720304-34720595:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.4664306640625 1 851.466167 850.45889 0.73844 0.00062876 -0.090486 -7.7046E-05 0.64796 0.00055171 851.4656670681692 100.51 0.11862 94.334 94.27 94.389 -6.1757 12 6 2 0 0 0 0.2655 1 67209 67209 59.795 3.2539 1 29934000 + 68650 28893 45661 46684 80208 80208 0.02767916328366482 VFTGVVTKL 9 Unmodified _VFTGVVTKL_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2973327636719 2 482.29731 962.580068 0.093151 4.4926E-05 -0.38754 -0.00018691 -0.29439 -0.00014198 482.2968931273183 54.219 0.35692 54.152 53.981 54.338 -0.066936 40 17 3 0 0 0 0.013609 2 29400 29400;29497 70.332 20.399 1 20186000 68651 825 45662 46685 80209;80210 80209 0.09728118971031563 VFTGVVTKL 9 Unmodified _VFTGVVTKL_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.298095703125 2 482.29731 962.580068 1.0307 0.00049709 1.4111 0.00068056 2.4417 0.0011776 482.29812663844655 60.262 0.40574 54.148 53.902 54.307 -6.1147 38 20 2 0 0 0 0.021948 1 38788 38788 61.602 6.8284 1 47391000 68652 825 45662 46685 80211 80211 0.09728118971031563 VFTKCHPSDVW 11 Unmodified _VFTKCHPSDVW_ 0 0 0 REV__ENSG00000164880|ENST00000404767|INTS1 REV__ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2135009765625 3 440.213141 1317.61759 0.06515 2.868E-05 1.7782 0.00078279 1.8434 0.00081147 440.214172759906 37.067 0.46894 37.089 36.816 37.285 0.021545 44 21 3 0 0 0 0.61059 1 19651 19651 5.8681 0 1 3372800 + 68653 21958 45663 46686 80212 80212 -0.028511578256484427 VFTKELTALF 10 Unmodified _VFTKELTALF_ 0 0 0 nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 nc|ENSG00000151693|O43150-2|ASAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.83447265625 2 584.834257 1167.65396 1.3007 0.0007607 -0.48162 -0.00028167 0.81908 0.00047903 584.8336370129405 97.636 0.14484 91.46 91.421 91.566 -6.1757 13 8 2 0 0 0 0.0069983 1 64711 64711 93.166 36.989 1 15582000 68654 6139 45664 46687 80213 80213 0.07684042342680186 VFTKIRLVL 9 Unmodified _VFTKIRLVL_ 0 0 0 nc|ENSG00000086827|O43264-2|ZW10;ENSG00000086827|ENST00000200135|ZW10 nc|ENSG00000086827|O43264-2|ZW10 nc|ENSG00000086827|O43264-2|ZW10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.9136352539062 3 363.57786 1087.71175 1.709 0.00062137 0.81799 0.0002974 2.527 0.00091877 363.57815647761413 93.887 0.18475 87.712 87.603 87.788 -6.1757 25 10 4 0 0 0 0.009483 1 62144 62144 65.474 25.234 1 29569000 68655 1445 45665 46688 80214 80214 0.17140349058786342 VFTLKPLEF 9 Unmodified _VFTLKPLEF_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.317626953125 2 547.318243 1092.62193 0.17586 9.6254E-05 -0.546 -0.00029884 -0.37014 -0.00020258 547.3177301718329 80.398 0.37457 80.456 80.328 80.703 0.057587 64 16 5 0 0 0 0.020316 2 44394 44394;44500 78.728 40.754 1 107580000 68656 10255 45666 46689 80215;80216 80215 0.07932674659582517 VFTLKPLEF 9 Unmodified _VFTLKPLEF_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32916643-32917850:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3196411132812 2 547.318243 1092.62193 1.1307 0.00061883 0.56118 0.00030714 1.6918 0.00092598 547.318380091924 96.888 0.33652 90.712 90.541 90.877 -6.1757 74 19 5 0 0 0 0.011739 3 64136 64103;64136;64256 92.653 48.795 1 493850000 68657 10255 45666 46689 80217;80218;80219 80218 0.07932674659582517 VFTLQSETLP 10 Unmodified _VFTLQSETLP_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8069458007812 2 567.805697 1133.59684 0.32069 0.00018209 0.48372 0.00027466 0.80441 0.00045675 567.8063790294896 34.099 0.3876 34.128 33.859 34.246 0.028934 36 17 3 0 0 0 0.13391 1 17945 17945 41.84 10.571 1 7516700 + 68658 19152 45667 46690 80220 80220 0.035385750663408544 VFTLQSETLP 10 Unmodified _VFTLQSETLP_ 0 0 0 REV__ENSG00000118492|ENST00000397944|ADGB REV__ENSG00000118492|ENST00000397944|ADGB MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.8069458007812 2 567.805697 1133.59684 0.46586 0.00026452 1.5229 0.00086473 1.9888 0.0011292 567.8067020850576 38.646 0.38774 34.277 34.074 34.461 -4.3689 59 24 3 0 0 0 0.14923 1 22731 22731 39.95 1.9757 1 44395000 + 68659 19152 45667 46690 80221 80221 0.035385750663408544 VFTLQSQQ 8 Unmodified _VFTLQSQQ_ 0 0 0 nc|ENSG00000183495|Q96L91-4|EP400;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400 nc|ENSG00000183495|Q96L91-4|EP400 nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7516174316406 2 475.750724 949.486896 0.80659 0.00038374 0.85592 0.0004072 1.6625 0.00079094 475.7510594868667 73.645 0.2791 73.169 72.996 73.275 -0.47588 14 11 2 0 0 0 0.77186 1 40312 40312 10.824 0 1 781110 68660 9153 45668 46691 80222 80222 0.010131945178159185 VFTLWYTF 8 Unmodified _VFTLWYTF_ 0 0 0 REV__ENSG00000007384|ENST00000262316|RHBDF1;REV__ENSG00000129667|ENST00000675367|RHBDF2 REV__ENSG00000129667|ENST00000675367|RHBDF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2479248046875 2 538.776211 1075.53787 0.25566 0.00013774 -0.12423 -6.6932E-05 0.13143 7.081E-05 538.7771381098237 63.698 0.21153 63.698 63.612 63.824 0 11 8 2 0 0 0 8.7369 1 35533 35533 10.183 0.83596 1 629970 + 68661 19678;17011 45669 46692 80223 80223 0.0031214356263262744 VFTNIMNK 8 Unmodified _VFTNIMNK_ 0 0 0 REV__XPO7-ASAH1|1|fusion REV__XPO7-ASAH1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7584228515625 2 483.757495 965.500437 1.0836 0.00052418 0.33489 0.00016201 1.4185 0.00068619 483.75752792400243 99.36 0.21127 93.184 93.113 93.324 -6.1757 30 13 3 0 0 0 0.46494 1 66123 66123 38.151 38.151 1 96090000 + 68662 18370 45670 46693 80224 80224 0.016307290253962492 VFTPVTTEI 9 Unmodified _VFTPVTTEI_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.77587890625 2 503.776408 1005.53826 0.42798 0.00021561 -0.31872 -0.00016056 0.10926 5.5044E-05 503.7763469910923 64.631 0.24834 64.631 64.496 64.745 0 20 12 2 0 0 0 0.28047 1 36027 36027 18.135 1.1927 1 1912300 68663 540 45671 46694 80225 80225 0.03571518491833103 VFTPVVQRI 9 Unmodified _VFTPVVQRI_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.82177734375 2 529.821484 1057.62842 -0.27824 -0.00014742 0.29473 0.00015615 0.016487 8.7354E-06 529.8214862122554 53.784 0.32931 53.717 53.572 53.901 -0.066936 55 21 3 0 0 0 0.024189 2 29249 29141;29249 65.235 37.606 1 45170000 68664 6274 45672 46695 80226;80227 80227 0.10190612610949756 VFTPVVQRI 9 Unmodified _VFTPVVQRI_ 0 0 0 ENSG00000153815|ENST00000537098|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;nc|ENSG00000153815|Q8IY22-3|CMIP ENSG00000153815|ENST00000537098|CMIP ENSG00000153815|ENST00000537098|CMIP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 529.821484 1057.62842 0.14602 7.7362E-05 -0.25848 -0.00013695 -0.11247 -5.9588E-05 529.8215392138962 54.197 0.1371 53.73 53.646 53.784 -0.46664 0.0063926 -0.00041848 NaN 65.235 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1158400 68665 6274 45672 46695 0.10190612610949756 VFTPYSAAFLL 11 Unmodified _VFTPYSAAFLL_ 0 0 0 ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;KCNH2|p.E857Gfs*27|1|0.14|ENSG00000055118|chr7:150948878-150948879|-/CCAGGCTGGACCAGAAGTGGTCGGAGAACTCAGGGTACATGTCCAGC|frameshift_variant;nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2 ENST00000473610.5_1_7:150648470-150652738:-|nuORF ENST00000473610.5_1_7:150648470-150652738:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.835693359375 2 614.834257 1227.65396 0.87153 0.00053585 -0.12155 -7.4734E-05 0.74998 0.00046112 614.8340792705197 101.31 0.098442 95.134 95.079 95.178 -6.1757 14 5 3 0 0 0 0.025642 1 67951 67951 56.177 10.477 1 40456000 68666 772 45673 46696 80228 80228 0.04924042342713619 VFTSRSAAF 9 Unmodified _VFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2586669921875 2 493.258717 984.50288 -0.15609 -7.6993E-05 -1.0891 -0.00053723 -1.2452 -0.00061422 493.2582400929609 36.845 0.41449 36.595 36.358 36.773 -0.2497 64 18 5 0 0 0 0.012668 2 19394 19287;19394 72.968 40.662 1 117990000 + 68667 199 45674 46697 80229;80230 80230 0.010009007547068904 VFTSRSAAF 9 Unmodified _VFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2589111328125 2 493.258717 984.50288 0.00042946 2.1183E-07 -0.91681 -0.00045223 -0.91639 -0.00045202 493.25812809794326 36.526 0.64023 36.548 36.323 36.963 0.021545 94 29 5 0 0 0 0.01958 2 19275 19275;19380 63.961 31.655 1 845550000 + 68668 199 45674 46697 80231;80232 80231 0.010009007547068904 VFTSRSAAF 9 Unmodified _VFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2577514648438 2 493.258717 984.50288 0.36481 0.00017994 0.13544 6.6809E-05 0.50025 0.00024675 493.2582352318781 41.314 1.1935 36.706 36.1 37.294 -4.6079 301 76 7 0 0 0 0.023481 3 24669 24669;24801;24928 60.074 27.768 1 1826799999.9999998 + 68669 199 45674 46697 80233;80234;80235 80233 0.010009007547068904 VFTSRSAAF 9 Unmodified _VFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 985.5098876953125 1 985.510157 984.50288 0.22026 0.00021707 -0.25758 -0.00025384 -0.037311 -3.677E-05 985.5095084697742 41.339 0.36518 36.731 36.528 36.894 -4.6079 41 23 2 0 0 0 0.0082981 2 24835 24704;24835 96.936 45.306 1 25326000 + 68670 199 45674 46697 80236;80237 80237 0.010009007547068904 VFTSRSAAF 9 Unmodified _VFTSRSAAF_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2585144042969 2 493.258717 984.50288 0.86567 0.000427 -0.67781 -0.00033434 0.18785 9.2659E-05 493.25817721605216 42.017 0.64287 37.332 37.051 37.693 -4.6846 75 40 4 0 0 0 0.032796 2 25320 25320;25478 53.833 15.859 1 58626000 + 68671 199 45674 46697 80238;80239 80238 0.010009007547068904 VFTSRSAAFS 10 Unmodified _VFTSRSAAFS_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7747802734375 2 536.774731 1071.53491 -0.098581 -5.2916E-05 -0.55893 -0.00030002 -0.65751 -0.00035293 536.7746820145336 32.582 0.13357 32.612 32.539 32.672 0.029743 7 4 2 0 0 0 0.036372 1 17112 17112 64.927 33.658 1 2391300 + 68672 199 45675 46698 80240 80240 0.0020026843783398363 VFTSRSAAFSG 11 Unmodified _VFTSRSAAFSG_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729 ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.2859497070312 2 565.285463 1128.55637 0.17385 9.8272E-05 -0.41044 -0.00023202 -0.2366 -0.00013375 565.2851824277706 32.421 0.24936 32.451 32.341 32.591 0.029743 24 9 3 0 0 0 0.0017085 1 17005 17005 80.896 55.496 1 7411800 + 68673 199 45676 46699 80241 80241 -0.002763465334510329 VFTSTARAF 9 Unmodified _VFTSTARAF_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2673034667969 2 500.266542 998.51853 -0.19894 -9.9523E-05 2.9427 0.0014722 2.7438 0.0013726 500.26814994217455 38.341 0.22746 38.054 37.887 38.114 -0.28687 17 9 2 0 0 0 0.10247 1 20170 20170 32.786 7.3864 1 989680 68674 6254 45677 46700 80242 80242 0.01921187271761937 VFTSTARAF 9 Unmodified _VFTSTARAF_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2672119140625 2 500.266542 998.51853 0.016963 8.4862E-06 0.23606 0.00011809 0.25302 0.00012658 500.2665912917641 37.935 0.29411 37.952 37.816 38.11 0.01704 40 13 4 0 0 0 0.023481 2 20123 20123;20221 60.074 27.768 1 23670000 68675 6254 45677 46700 80243;80244 80243 0.01921187271761937 VFTSTARAF 9 Unmodified _VFTSTARAF_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2674865722656 2 500.266542 998.51853 0.86759 0.00043403 0.62956 0.00031495 1.4972 0.00074898 500.26687025530504 43.033 0.3884 38.268 38.045 38.433 -4.7648 59 25 3 0 0 0 0.028475 2 26022 26022;26163 56.177 23.872 1 46237000 68676 6254 45677 46700 80245;80246 80245 0.01921187271761937 VFTSVRQKI 9 Unmodified _VFTSVRQKI_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8858337402344 3 359.885353 1076.63423 1.7204 0.00061913 -0.044075 -1.5862E-05 1.6763 0.00060327 359.8851870861212 32.225 0.4041 28.368 28.161 28.565 -3.8562 50 23 3 0 0 0 0.06294 1 18300 18300 38.615 5.1698 1 36139000 68677 4023 45678 46701 80247 80247 0.09897711122607689 VFTSVRQKI 9 Unmodified _VFTSVRQKI_ 0 0 0 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MSMS AL20221201_MKP_PDAC_01 4 539.3241577148438 2 539.324391 1076.63423 NaN NaN NaN NaN NaN NaN NaN 32.262 1 28.405 27.905 28.905 -3.8562 0 0 0 0.061161 1 18363 18363 53.404 8.997 1 68678 4023 45678 46701 80248 80248 0.09897711122607689 VFTTHVPTL 9 Unmodified _VFTTHVPTL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7848205566406 2 507.784567 1013.55458 0.12996 6.5991E-05 0.357 0.00018128 0.48696 0.00024727 507.7848117926696 55.545 0.33041 55.067 54.883 55.213 -0.47798 24 15 2 0 0 0 0.28047 1 30185 30185 18.135 9.5417 1 1491000 68679 4239 45679 46702 80249 80249 0.048346444486242035 VFTTHVPTL 9 Unmodified _VFTTHVPTL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.7847900390625 2 507.784567 1013.55458 0.35197 0.00017873 -0.10038 -5.0971E-05 0.25159 0.00012776 507.7847769758002 55.137 0.35936 55.069 54.939 55.298 -0.068741 39 17 3 0 0 0 0.012148 2 30040 29943;30040 74.423 49.023 1 6123100 68680 4239 45679 46702 80250;80251 80251 0.048346444486242035 VFTTHVPTL 9 Unmodified _VFTTHVPTL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7851257324219 2 507.784567 1013.55458 0.95801 0.00048646 -0.78332 -0.00039776 0.17469 8.8706E-05 507.78438621202025 61.313 0.35884 55.165 54.978 55.337 -6.1478 21 17 2 0 0 0 0.0082485 1 39484 39484 96.285 51.878 1 26442000 68681 4239 45679 46702 80252 80252 0.048346444486242035 VFTTSSNIF 9 Unmodified _VFTTSSNIF_ 0 0 0 ENSG00000075213|ENST00000265362|SEMA3A ENSG00000075213|ENST00000265362|SEMA3A ENSG00000075213|ENST00000265362|SEMA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.2595520019531 2 508.258382 1014.50221 0.91698 0.00046606 0.80854 0.00041095 1.7255 0.00087701 508.2588785732063 64.629 0.45187 64.62 64.339 64.791 -0.0091324 48 20 3 0 0 0 0.03327 1 35397 35397 53.576 17.531 1 9251300 68682 1145 45680 46703 80253 80253 -0.0044593868499305245 VFTYVGALF 9 Unmodified _VFTYVGALF_ 0 0 0 nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4 nc|ENSG00000115310|Q9NQC3-3|RTN4 nc|ENSG00000115310|Q9NQC3-3|RTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7770080566406 2 508.776211 1015.53787 0.71694 0.00036476 0.033163 1.6873E-05 0.7501 0.00038163 508.7761981483513 100.52 0.24402 94.346 94.187 94.431 -6.1757 40 15 4 0 0 0 0.045537 1 67198 67198 46.921 12.734 1 610220000 68683 3110 45681 46704 80254 80254 0.030721435626787752 VFVAGVFLFF 10 Unmodified _VFVAGVFLFF_ 0 0 0 ENSG00000189362|ENST00000409150|NEMP2;nc|ENSG00000189362|A6NFY4-2|NEMP2;ENST00000343105.9_1_2:191381046-191390059:-|nuORF ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.786865234375 2 573.323328 1144.6321 0.32802 0.00018806 3.479 0.0019946 3.807 0.0021827 573.3273568191418 73.777 0.37402 73.821 73.654 74.028 0.043983 42 17 4 0 0 0 0.22993 1 40767 40767 12.532 4.6214 1 9937200 68684 9746 45682 46705 80255 80255 0.0655728238480151 VFVDRAACF 9 Carbamidomethyl (C) _VFVDRAAC(Carbamidomethyl (C))F_ VFVDRAAC(1)F VFVDRAAC(46)F 0 1 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.765625 2 542.765852 1083.51715 0.41479 0.00022513 -0.59171 -0.00032116 -0.17693 -9.6029E-05 542.7656454287053 46.793 0.2345 46.456 46.347 46.582 -0.33664 22 11 3 0 0 0 0.047714 1 25061 25061 45.74 26.483 1 4515000 68685 1546 45683 46706 80256 80256 145 -0.021267700886710372 VFVDRAACF 9 Carbamidomethyl (C) _VFVDRAAC(Carbamidomethyl (C))F_ VFVDRAAC(1)F VFVDRAAC(62)F 0 1 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7665405273438 2 542.765852 1083.51715 0.92837 0.00050389 -1.0164 -0.00055168 -0.088052 -4.7792E-05 542.7657764190446 52.864 0.47903 47.06 46.804 47.284 -5.8042 62 26 3 0 0 0 0.021948 2 33415 33300;33415 61.602 37.268 1 144980000 68686 1546 45683 46706 80257;80258 80258 145 -0.021267700886710372 VFVDRAACF 9 Carbamidomethyl (C) _VFVDRAAC(Carbamidomethyl (C))F_ 0 1 0 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 ENSG00000090054|ENST00000262554|SPTLC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.765852 1083.51715 1.0645 0.00057779 -0.25886 -0.0001405 0.80567 0.00043729 543.2677201532356 46.495 0.16197 46.462 46.329 46.491 -0.033417 0.0027814 0.00031075 NaN 45.74 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 948580 68687 1546 45683 46706 145 -0.021267700886710372 VFVDSVPEF 9 Unmodified _VFVDSVPEF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7607421875 2 519.760758 1037.50696 0.4285 0.00022272 0.01666 8.6594E-06 0.44516 0.00023137 519.7607258607381 75.404 0.45208 75.404 75.168 75.621 0 55 19 4 0 0 0 0.013472 2 41979 41883;41979 70.716 28.621 1 12630000 68688 2191 45684 46707 80259;80260 80260 -0.010290545422321884 VFVDSVPEF 9 Unmodified _VFVDSVPEF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7608032226562 2 519.760758 1037.50696 0.39336 0.00020445 0.13113 6.8156E-05 0.52449 0.00027261 519.7608058401696 75.899 0.49641 75.422 75.19 75.686 -0.47713 72 21 5 0 0 0 0.013472 2 41496 41496;41606 70.716 28.621 1 20919000 68689 2191 45684 46707 80261;80262 80261 -0.010290545422321884 VFVDSVPEF 9 Unmodified _VFVDSVPEF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.76025390625 2 519.760758 1037.50696 0.20877 0.00010851 0.48607 0.00025264 0.69484 0.00036115 519.7606168867696 75.385 0.29026 75.431 75.266 75.557 0.045959 21 13 2 0 0 0 0.023164 1 41549 41549 60.39 26.287 1 2311500 68690 2191 45684 46707 80263 80263 -0.010290545422321884 VFVDSVPEF 9 Unmodified _VFVDSVPEF_ 0 0 0 ENST00000520983.5_1_8:28651295-28747426:-|nuORF;nc|ENSG00000104299|Q9NV88-3|INTS9;ENSG00000104299|ENST00000521022|INTS9 ENST00000520983.5_1_8:28651295-28747426:-|nuORF ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7611694335938 2 519.760758 1037.50696 1.0521 0.00054682 0.35349 0.00018373 1.4056 0.00073056 519.7608664866272 83.817 0.86589 77.641 77.082 77.948 -6.1757 116 38 4 0 0 0 0.013472 3 55124 55000;55124;55238 70.716 28.621 1 170880000 68691 2191 45684 46707 80264;80265;80266 80265 -0.010290545422321884 VFVDTHDLRF 10 Unmodified _VFVDTHDLRF_ 0 0 0 nc|ENSG00000143379|Q15047-3|SETDB1;nc|ENSG00000143379|Q15047|SETDB1;ENSG00000143379|ENST00000692827|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 nc|ENSG00000143379|Q15047-3|SETDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.8843078613281 3 416.8839 1247.62987 0.31242 0.00013024 0.65968 0.00027501 0.9721 0.00040525 416.8841807747878 59.339 0.239 58.848 58.707 58.946 -0.49079 23 10 3 0 0 0 0.38225 1 32266 32266 19.987 13.363 1 2021700 68692 5503 45685 46708 80267 80267 0.015962019090238755 VFVEATHVL 9 Unmodified _VFVEATHVL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000482948.5_1_5:137536747-137548896:-|nuORF ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2864379882812 2 507.784567 1013.55458 0.14483 7.3545E-05 -0.40138 -0.00020382 -0.25655 -0.00013027 507.7847052523871 53.527 0.27842 53.075 52.963 53.242 -0.45173 32 13 3 0 0 0 0.026094 1 28969 28969 57.471 34.323 1 4144100 68693 1638 45686 46709 80268 80268 0.04834644448601466 VFVFPTELIF 10 Unmodified _VFVFPTELIF_ 0 0 0 ENST00000491609.5_1_X:134031062-134033469:-|nuORF;ENST00000462060.1_1_X:134033250-134033469:-|nuORF;nc|ENSG00000101928|Q9UJG1-2|MOSPD1;ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1 ENST00000491609.5_1_X:134031062-134033469:-|nuORF ENST00000491609.5_1_X:134031062-134033469:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 606.3399047851562 2 606.339175 1210.6638 NaN NaN NaN NaN NaN NaN NaN 102.45 1 96.275 95.775 96.775 -6.1757 0 0 0 0.90096 1 68751 68751 7.9102 0.62092 1 68694 2000 45687 46710 80269 80269 0.06689230348092678 VFVGGVPESL 10 Unmodified _VFVGGVPESL_ 0 0 0 nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 nc|ENSG00000112769|Q16363-2|LAMA4 MSMS AL20221201_MKP_PDAC_01 4 502.2760009765625 2 502.276575 1002.5386 NaN NaN NaN NaN NaN NaN NaN 45.091 1 40.239 39.739 40.739 -4.852 0 0 0 0.087592 1 27621 27621 52.268 0 1 68695 2919 45688 46711 80270 80270 0.03742938211712499 VFVGKGITF 9 Unmodified _VFVGKGITF_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2845153808594 2 484.284203 966.553853 0.59966 0.0002904 0.22413 0.00010854 0.82379 0.00039895 484.2842778911276 58.961 0.36549 58.901 58.699 59.065 -0.060722 60 17 4 0 0 0 0.032796 2 32063 32063;32168 53.833 29.159 1 36358000 68696 261 45689 46712 80271;80272 80271 0.06923849799568416 VFVGKGITF 9 Unmodified _VFVGKGITF_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2866821289062 2 484.284203 966.553853 1.1707 0.00056694 0.41096 0.00019902 1.5816 0.00076596 484.28452296637204 64.712 0.81676 58.537 58.315 59.132 -6.1757 96 45 3 0 0 0 0.017075 3 41846 41846;41974;42107 66.457 32.354 1 73398000 68697 261 45689 46712 80273;80274;80275 80273 0.06923849799568416 VFVGTGDLF 9 Unmodified _VFVGTGDLF_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK;ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-2|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.4921875 1 954.49311 953.485833 0.88279 0.00084261 0.88297 0.00084279 1.7658 0.0016854 954.4940427749192 79.955 0.26351 79.465 79.296 79.56 -0.48932 18 10 2 0 0 0 0.25297 1 43838 43838 19.439 2.4967 1 2085500 68698 6701 45690 46713 80276 80276 0.007229801489188503 VFVGYGSTF 9 Unmodified _VFVGYGSTF_ 0 0 0 ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2 ENSG00000136960|ENST00000075322|ENPP2 ENSG00000136960|ENST00000075322|ENPP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.7424926757812 2 488.742368 975.470183 NaN NaN NaN NaN NaN NaN NaN 72.803 1 72.328 71.828 72.828 -0.47588 0 0 0 0.6306 1 39842 39842 11.64 0 1 68699 4889 45691 46714 80277 80277 -0.018533063681275053 VFVIGVLDNL 10 Unmodified _VFVIGVLDNL_ 0 0 0 ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 ENSG00000121797|ENST00000399036|CCRL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.8219604492188 2 544.82115 1087.62775 0.49133 0.00026769 -0.0047553 -2.5908E-06 0.48657 0.0002651 544.8213323646032 73.04 0.44523 73.04 72.749 73.195 0 40 20 3 0 0 0 0.69064 1 40681 40681 3.9444 0 1 788360 68700 3601 45692 46715 80278 80278 0.08743773171227076 VFVKQEQI 8 Unmodified _VFVKQEQI_ 0 0 0 ENST00000413744.1_2_7:112758459-112758579:-|nuORF;ENST00000441359.1_2_7:112757550-112758579:-|nuORF ENST00000413744.1_2_7:112758459-112758579:-|nuORF ENST00000413744.1_2_7:112758459-112758579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7852172851562 2 495.784567 989.554582 0.23499 0.0001165 0.66807 0.00033122 0.90306 0.00044772 495.78445165762537 76.371 0.22206 75.891 75.71 75.932 -0.47945 15 8 3 0 0 0 0.80044 1 41801 41801 6.3541 0 1 803160 68701 13002 45693 46716 80279 80279 0.05938644448622199 VFVLPGEPL 9 Unmodified _VFVLPGEPL_ 0 0 0 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 REV__nc|ENSG00000142513|Q9BZG2-3|ACP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7853698730469 2 485.784036 969.553519 NaN NaN NaN NaN NaN NaN NaN 69.943 1 69.943 69.443 70.443 0 0 0 0 0.46757 1 38966 38966 16.942 2.3606 1 + 68702 20575 45694 46717 80280 80280 0.06752430079723126 VFVLSENF 8 Unmodified _VFVLSENF_ 0 0 0 ENSG00000137462|ENST00000642700|TLR2;ENST00000602666.1_1_4:154600985-154601297:+|nuORF ENSG00000137462|ENST00000642700|TLR2 ENSG00000137462|ENST00000642700|TLR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7493591308594 2 477.750193 953.485833 1.0839 0.00051784 -0.48702 -0.00023267 0.5969 0.00028517 477.7498274819704 79.955 0.24812 79.465 79.312 79.56 -0.48932 15 9 2 0 0 0 0.76859 1 43765 43765 11.114 0 1 605650 68703 4933 45695 46718 80281 80281 0.007229801489074816 VFVNIQYTL 9 Unmodified _VFVNIQYTL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8067626953125 2 548.8055 1095.59645 1.355 0.00074364 0.84688 0.00046477 2.2019 0.0012084 548.8059084037127 81.313 0.64202 81.373 81.19 81.832 0.059929 49 24 3 0 0 0 0.019979 2 44938 44938;45035 63.563 27.519 1 10140000 68704 6526 45696 46719 80282;80283 80282 0.052472001371370425 VFVNIQYTL 9 Unmodified _VFVNIQYTL_ 0 0 0 ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C ENST00000480452.5_1_21:38605608-38639601:-|nuORF ENST00000480452.5_1_21:38605608-38639601:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.805908203125 2 548.8055 1095.59645 0.89736 0.00049247 -0.98056 -0.00053814 -0.083208 -4.5665E-05 548.8052636627413 90.072 0.67811 83.896 83.508 84.186 -6.1757 98 38 3 0 0 0 0.0086179 3 59397 59268;59397;59552 89.427 31.955 1 38957000 68705 6526 45696 46719 80284;80285;80286 80285 0.052472001371370425 VFVNTHHIL 9 Unmodified _VFVNTHHIL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.5380249023438 3 360.538064 1078.59236 -0.077515 -2.7947E-05 0.40386 0.00014561 0.32634 0.00011766 360.53811061328025 41.399 0.20691 41.096 40.964 41.171 -0.30304 19 9 3 0 0 0 0.031062 1 21901 21901 57.722 38.465 1 4566800 68706 7973 45697 46720 80287 80287 0.05621155434096181 VFVNTHHIL 9 Unmodified _VFVNTHHIL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5379638671875 3 360.538064 1078.59236 0.097049 3.499E-05 0.48775 0.00017585 0.5848 0.00021084 360.5381912966171 41.044 0.30949 41.042 40.891 41.2 -0.0017929 38 14 3 0 0 0 0.038285 2 21881 21881;21992 62.573 43.316 1 19597000 68707 7973 45697 46720 80288;80289 80288 0.05621155434096181 VFVNTHHIL 9 Unmodified _VFVNTHHIL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5377197265625 3 360.538064 1078.59236 1.2469 0.00044955 2.504 0.00090278 3.7509 0.0013523 360.53950566624655 46.167 0.41911 41.212 40.936 41.355 -4.9549 77 27 4 0 0 0 0.2001 1 28350 28350 21.537 10.713 1 97548000 68708 7973 45697 46720 80290 80290 0.05621155434096181 VFVNTHHIL 9 Unmodified _VFVNTHHIL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.3027954101562 2 540.303458 1078.59236 0.4177 0.00022568 -0.073716 -3.9829E-05 0.34398 0.00018585 540.3032350149881 46.149 0.3512 41.194 41.018 41.369 -4.9549 54 23 3 0 0 0 0.040683 1 28385 28385 49.554 3.8043 1 38978000 68709 7973 45697 46720 80291 80291 0.05621155434096181 VFVNTHHIL 9 Unmodified _VFVNTHHIL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2;nc|ENSG00000170340|Q9NY97-2|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.303458 1078.59236 -0.20238 -0.00010935 0.31457 0.00016996 0.11219 6.0616E-05 540.3034975353645 41.558 0.23749 41.556 41.422 41.66 -0.0017929 0.13059 0.00011361 NaN 49.554 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 7048800 68710 7973 45697 46720 0.05621155434096181 VFVPFFVF 8 Unmodified _VFVPFFVF_ 0 0 0 nc|ENSG00000152969|Q96N16-3|JAKMIP1 nc|ENSG00000152969|Q96N16-3|JAKMIP1 nc|ENSG00000152969|Q96N16-3|JAKMIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2752685546875 2 501.278389 1000.54223 0.22811 0.00011435 -3.6306 -0.0018199 -3.4025 -0.0017056 501.2764803501798 71.523 0.45638 71.045 70.861 71.318 -0.47735 34 18 2 0 0 0 0.61999 1 39121 39121 24.21 4.771 1 737490 68711 16279 45698 46721 80292 80292 0.04197652776235827 VFVRGFFG 8 Unmodified _VFVRGFFG_ 0 0 0 REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF REV__ENST00000563328.4_1_16:72821533-72822025:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7556762695312 2 464.755613 927.496673 NaN NaN NaN NaN NaN NaN NaN 84.28 1 84.28 83.78 84.78 0 0 0 0 0.97444 1 46726 46726 0 0 1 + 68712 28871 45699 46722 80293 80293 0.030024273138678836 VFVTHESKF 9 Unmodified _VFVTHESKF_ 0 0 0 REV__nc|ENSG00000174485|Q7Z401|DENND4A REV__nc|ENSG00000174485|Q7Z401|DENND4A MSMS AL20221201_MKP_PDAC_01 4 547.2896728515625 2 547.287474 1092.5604 NaN NaN NaN NaN NaN NaN NaN 92.302 1 86.127 85.627 86.627 -6.1757 0 0 0 0.26667 1 61039 61039 26.884 0 1 + 68713 22795 45700 46723 80294 80294 0.01781742960270094 VFVVDSAAF 9 Unmodified _VFVVDSAAF_ 0 0 0 ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7502136230469 2 477.750193 953.485833 0.27314 0.00013049 0.75708 0.0003617 1.0302 0.00049219 477.7503513490306 72.354 0.26714 72.354 72.219 72.487 0 17 10 2 0 0 0 0.3554 1 40279 40279 14.582 3.4672 1 577810 68714 5655 45701 46724 80295 80295 0.007229801489074816 VFVVDSAAF 9 Unmodified _VFVVDSAAF_ 0 0 0 ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 954.494140625 1 954.49311 953.485833 0.56244 0.00053685 0.47718 0.00045546 1.0396 0.00099231 954.4935594987588 72.785 0.32954 72.309 72.167 72.497 -0.47588 32 14 3 0 0 0 0.12841 1 39796 39796 30.225 8.4782 1 2398300 68715 5655 45701 46724 80296 80296 0.007229801489074816 VFVVDSAAF 9 Unmodified _VFVVDSAAF_ 0 0 0 ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7508544921875 2 477.750193 953.485833 0.76147 0.00036379 0.10934 5.2235E-05 0.87081 0.00041603 477.7503595572905 72.779 0.35115 72.303 72.146 72.497 -0.47588 42 15 3 0 0 0 0.3554 1 39896 39896 14.582 3.4672 1 2932100 68716 5655 45701 46724 80297 80297 0.007229801489074816 VFVVDSAAF 9 Unmodified _VFVVDSAAF_ 0 0 0 ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB ENSG00000144867|ENST00000678299|SRPRB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 954.49311 953.485833 -0.16952 -0.00016181 1.0175 0.00097117 0.84795 0.00080936 954.4941778165206 72.319 0.24127 72.319 72.219 72.461 0 0.0054343 0.00036626 NaN 30.225 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 354750 68717 5655 45701 46724 0.007229801489074816 VFVVGGAGT 9 Unmodified _VFVVGGAGT_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G2156S|1|0.11|ENSG00000007174|chr17:11747622-11747622|G/A|missense_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.1488342285156 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 0.62487 1 0.60425 0.10425 1.1043 -0.020623 0 0 0 0.8622 1 329 329 0 0 1 68718 358 45702 46725 80298 80298 0.02290441805973842 VFVVGGAGT 9 Unmodified _VFVVGGAGT_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.G2156S|1|0.11|ENSG00000007174|chr17:11747622-11747622|G/A|missense_variant nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.7243041992188 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 1.4391 1 1.4185 0.9185 1.9185 -0.020623 0 0 0 0.8622 1 747 747 0 0 1 68719 358 45702 46725 80299 80299 0.02290441805973842 VFVVQLPAF 9 Unmodified _VFVVQLPAF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.299560546875 2 510.299853 1018.58515 NaN NaN NaN NaN NaN NaN NaN 99.867 1 99.83 99.33 100.33 -0.036301 0 0 0 0.11925 1 55470 55470 40.449 22.314 1 68720 1104 45703 46726 80300 80300 0.07660422833657776 VFVVQLPAF 9 Unmodified _VFVVQLPAF_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF;nc|ENSG00000073350|Q6P1M3-3|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3021240234375 2 510.299853 1018.58515 1.2966 0.00066163 1.3264 0.00067684 2.6229 0.0013385 510.30067265153843 100.99 0.12087 94.816 94.748 94.869 -6.1757 11 6 2 0 0 0 0.1492 1 67694 67694 28.173 7.302 1 18222000 68721 1104 45703 46726 80301 80301 0.07660422833657776 VFVYQFPEP 9 Unmodified _VFVYQFPEP_ 0 0 0 ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF ENST00000216068.8_1_22:39175191-39175356:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.859375 3 375.858692 1124.55425 0.064211 2.4134E-05 0.22013 8.2738E-05 0.28434 0.00010687 375.8588045950713 65.833 0.45837 65.833 65.572 66.03 0 38 22 2 0 0 0 0.52067 1 36651 36651 3.8763 0 1 4271500 68722 11002 45704 46727 80302 80302 -0.003047752712518559 VFYCLLFVF 9 Unmodified _VFYCLLFVF_ 0 0 0 ENSG00000179934|ENST00000326306|CCR8 ENSG00000179934|ENST00000326306|CCR8 ENSG00000179934|ENST00000326306|CCR8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.7748413085938 2 575.803914 1149.59328 1.0506 0.00060495 2.0059 0.001155 3.0565 0.0017599 575.8051286332988 57.513 0.31136 51.486 51.258 51.569 -6.0275 21 16 2 0 0 0 0.17158 1 36814 36814 14.582 0 1 21442000 68723 8870 45705 46728 80303 80303 0.024462337587692673 VFYETGLNVPR 11 Unmodified _VFYETGLNVPR_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.8413696289062 2 647.843145 1293.67174 0.36105 0.0002339 -1.3232 -0.00085725 -0.96219 -0.00062335 648.3436327913574 87.505 0.2986 87.001 86.761 87.06 -0.50423 20 12 2 0 0 0 0.71618 1 47841 47841 2.7352 1.4057 1 507590 68724 1587 45706 46729 80304 80304 0.036647575975621294 VFYFLHVR 8 Unmodified _VFYFLHVR_ 0 0 0 ENST00000360370.8_1_3:125726003-125734341:-|nuORF ENST00000360370.8_1_3:125726003-125734341:-|nuORF ENST00000360370.8_1_3:125726003-125734341:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.8704833984375 3 360.871155 1079.59164 NaN NaN NaN NaN NaN NaN NaN 46.903 1 41.823 41.323 42.323 -5.0805 0 0 0 0.94749 1 29049 29049 7.9102 0.80843 1 68725 12165 45707 46730 80305 80305 0.05502360785044402 VFYFSVKML 9 Unmodified _VFYFSVKML_ 0 0 0 REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF REV__ENST00000517937.1_1_6:56599965-56716690:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.5423583984375 3 378.540306 1132.59909 NaN NaN NaN NaN NaN NaN NaN 69.174 1 62.998 62.498 63.498 -6.1757 0 0 0 0.56093 1 45169 45169 13.615 0 1 + 68726 28236 45708 46731 80306 80306 0.038093322704526145 VFYFWFYL 8 Unmodified _VFYFWFYL_ 0 0 0 REV__ENSG00000147155|ENST00000495186|EBP REV__ENSG00000147155|ENST00000495186|EBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5320129394531 3 395.532028 1183.57425 -0.53324 -0.00021091 -0.87035 -0.00034425 -1.4036 -0.00055517 395.531894925125 14.811 0.079487 14.78 14.745 14.825 -0.030868 59 18 5 0 0 0 0.80624 1 7222 7222 1.8442 0.6509 1 4154300 + 68727 20872 45709 46732 80307 80307 -0.010189795406176927 VFYHGQQL 8 Unmodified _VFYHGQQL_ 0 0 0 ENSG00000155897|ENST00000286355|ADCY8 ENSG00000155897|ENST00000286355|ADCY8 ENSG00000155897|ENST00000286355|ADCY8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2542114257812 2 496.253434 990.492316 NaN NaN NaN NaN NaN NaN NaN 29.347 1 29.285 28.785 29.785 -0.062159 0 0 0 0.97444 1 15177 15177 2.5775 0.73324 1 68728 6416 45710 46733 80308 80308 -0.003310818997192655 VFYLMELFFFF 11 Unmodified _VFYLMELFFFF_ 0 0 0 ENST00000473333.1_1_7:74160372-74160549:+|nuORF ENST00000473333.1_1_7:74160372-74160549:+|nuORF ENST00000473333.1_1_7:74160372-74160549:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.9148559570312 3 501.585804 1501.73558 -0.86857 -0.00043566 0.3249 0.00016297 -0.54367 -0.0002727 501.5861698643522 18.812 0.34622 18.835 18.704 19.05 0.023106 122 35 5 0 0 0 0.30604 1 9516 9516 0.094841 0.094841 1 15398000 68729 13920 45711 46734 80309 80309 0.004784017102792859 VFYLTQSFR 9 Unmodified _VFYLTQSFR_ 0 0 0 ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1 ENSG00000134452|ENST00000362091|FBH1 ENSG00000134452|ENST00000362091|FBH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.875732421875 3 387.541475 1159.60259 0.019009 7.367E-06 0.29526 0.00011442 0.31427 0.00012179 387.5414830440352 45.549 0.2599 45.521 45.401 45.661 -0.028011 27 13 3 0 0 0 0.51218 1 24440 24440 7.1017 1.3183 1 15082000 68730 4609 45712 46735 80310 80310 0.029177183686670105 VFYMNISCI 9 Unmodified _VFYMNISCI_ 0 0 0 REV__nc|ENSG00000110911|P49281-5|SLC11A2 REV__nc|ENSG00000110911|P49281-5|SLC11A2 MSMS AL20221201_MKP_PDAC_01 4 363.8411865234375 3 363.841768 1088.50347 NaN NaN NaN NaN NaN NaN NaN 47.191 1 42.111 41.611 42.611 -5.0805 0 0 0 0.82015 1 29262 29262 2.9952 0 1 + 68731 18728 45713 46736 80311 80311 -0.03723763912103095 VFYPNSNKF 9 Unmodified _VFYPNSNKF_ 0 0 0 ENSG00000160345|ENST00000429260|PIERCE1 ENSG00000160345|ENST00000429260|PIERCE1 ENSG00000160345|ENST00000429260|PIERCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2794799804688 2 558.279649 1114.54475 0.57065 0.00031858 0.47473 0.00026503 1.0454 0.00058361 558.2798207636474 42.364 0.2591 42.355 42.208 42.467 -0.0088234 17 11 2 0 0 0 0.010611 1 22683 22683 78.728 46.423 1 5492600 68732 6722 45714 46737 80312 80312 -0.007945435567535242 VFYPPNGVIPF 11 Unmodified _VFYPPNGVIPF_ 0 0 0 nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF nc|ENSG00000109680|Q8N5T2-2|TBC1D19 nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3343505859375 2 625.334424 1248.6543 1.1109 0.0006947 0.66731 0.00041729 1.7782 0.001112 625.3343956670913 100.17 0.23932 93.995 93.819 94.058 -6.1757 25 14 2 0 0 0 0.45445 1 66874 66874 30.637 16.055 1 14791000 68733 2664 45715 46738 80313 80313 0.039914620625495445 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2918701171875 2 612.292225 1222.5699 0.59332 0.00036328 -0.11627 -7.1194E-05 0.47704 0.00029209 612.2921099566192 84.095 0.26597 83.595 83.463 83.729 -0.49961 17 11 2 0 0 0 0.37804 2 46000 45955;46000 13.508 5.5977 1 878940 68734 2107 45716 46739 80314;80315 80315 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2938842773438 2 612.292225 1222.5699 0.41415 0.00025358 0.55871 0.00034209 0.97287 0.00059568 612.2925180311172 83.502 0.37382 83.565 83.383 83.757 0.063171 34 13 4 0 0 0 0.012158 2 46172 46172;46270 74.396 48.055 1 30523000 68735 2107 45716 46739 80316;80317 80316 -0.032484887542068464 VFYPYPQYF 9 Unmodified _VFYPYPQYF_ 0 0 0 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 ENSG00000103160|ENST00000219439|HSDL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2935180664062 2 612.292225 1222.5699 1.0788 0.00066056 0.1014 6.2089E-05 1.1802 0.00072265 612.2923164969424 91.936 0.64616 85.76 85.469 86.115 -6.1757 87 37 3 0 0 0 0.019979 3 60785 60670;60785;60912 63.563 46.621 1 105220000 68736 2107 45716 46739 80318;80319;80320 80319 -0.032484887542068464 VFYPYPSE 8 Unmodified _VFYPYPSE_ 0 0 0 REV__ENST00000527808.1_1_11:102219126-102219376:+|nuORF REV__ENST00000527808.1_1_11:102219126-102219376:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7362670898438 2 501.234376 1000.4542 0.39901 0.0002 -0.14113 -7.0741E-05 0.25788 0.00012926 501.234226318075 86.915 0.40502 86.915 86.701 87.106 0 56 25 3 0 0 0 0.80232 1 48087 48087 5.2307 0 1 2091800 + 68737 28398 45717 46740 80321 80321 -0.04601012605053256 VFYPYPSE 8 Unmodified _VFYPYPSE_ 0 0 0 REV__ENST00000527808.1_1_11:102219126-102219376:+|nuORF REV__ENST00000527808.1_1_11:102219126-102219376:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7362670898438 2 501.234376 1000.4542 0.39901 0.0002 -0.14113 -7.0741E-05 0.25788 0.00012926 501.234226318075 86.915 0.40502 86.915 86.701 87.106 0 56 25 3 0 0 0 8.7369 1 48087 48087 5.2307 0 1 2091800 + 68738 28398 45717 46740 80322 80322 -0.04601012605053256 VGAACARAF 9 Unmodified _VGAACARAF_ 0 0 0 REV__ENST00000495200.1_1_2:198365187-198365367:+|nuORF REV__ENST00000495200.1_1_2:198365187-198365367:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.22265625 2 433.22108 864.427607 NaN NaN NaN NaN NaN NaN NaN 79.318 1 73.143 72.643 73.643 -6.1757 0 0 0 0.82015 1 51968 51968 5.2307 0 1 + 68739 27948 45718 46741 80323 80323 -0.010029799773747072 VGAAGAWRAHV 11 Unmodified _VGAAGAWRAHV_ 0 0 0 REV__ENST00000352681.7_2_16:727083-728243:+|nuORF REV__ENST00000352681.7_2_16:727083-728243:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.251708984375 2 547.796332 1093.57811 -0.19651 -0.00010765 -1.0562 -0.0005786 -1.2527 -0.00068625 547.7956078925547 30.831 0.16145 30.831 30.711 30.872 0 11 7 2 0 0 0 0.29947 1 16027 16027 6.7232 0.51738 1 1643900 + 68740 25787 45719 46742 80324 80324 0.03506503005792183 VGAAGPARACP 11 Unmodified _VGAAGPARACP_ 0 0 0 REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF REV__ENST00000580170.5_1_18:7567593-7774159:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2507629394531 2 485.250369 968.486184 NaN NaN NaN NaN NaN NaN NaN 15.385 1 15.385 14.885 15.885 0 0 0 0 0.93893 1 7405 7405 3.2813 1.4371 1 + 68741 29057 45720 46743 80325 80325 0.0006807659710830194 VGAALFPASPY 11 Unmodified _VGAALFPASPY_ 0 0 0 REV__ENSG00000158201|ENST00000289119|ABHD3 REV__ENSG00000158201|ENST00000289119|ABHD3 MSMS AL20221201_MKP_PDAC_01 4 364.5277404785156 3 364.862325 1091.56515 NaN NaN NaN NaN NaN NaN NaN 31.358 1 27.662 27.162 28.162 -3.6958 0 0 0 0.74212 1 17750 17750 7.9454 1.7536 1 + 68742 21422 45721 46744 80326 80326 0.023026271030403223 VGAARAAAH 9 Unmodified _VGAARAAAH_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2303466796875 2 412.230294 822.446034 -0.09379 -3.8663E-05 -0.17802 -7.3384E-05 -0.27181 -0.00011205 412.2301732123651 18.745 0.22095 18.751 18.641 18.862 0.0060463 25 10 3 0 0 0 0.30562 1 9497 9497 16.942 0 1 14746000 68743 6400 45722 46745 80327 80327 0.027708979888416252 VGAASFGV 8 Unmodified _VGAASFGV_ 0 0 0 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3;nc|ENSG00000160216|Q9NRZ7-2|AGPAT3;ENSG00000160216|ENST00000291572|AGPAT3 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1900329589844 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 18.517 1 18.54 18.04 19.04 0.023106 0 0 0 0.97444 1 9289 9289 0.69038 0 1 68744 16315 45723 46746 80328 80328 6.197226105086884E-05 VGAASYAKRLS 11 Unmodified _VGAASYAKRLS_ 0 0 0 REV__ENSG00000113946|ENST00000264734|CLDN16 REV__ENSG00000113946|ENST00000264734|CLDN16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.8802185058594 3 374.880379 1121.61931 NaN NaN NaN NaN NaN NaN NaN 14.948 1 14.948 14.448 15.448 0 0 0 0 0.94184 1 7156 7156 0.40827 0 1 + 68745 18897 45724 46747 80329 80329 0.06336219254603748 VGAATALPV 9 Unmodified _VGAATALPV_ 0 0 0 ENST00000555574.1_1_14:51706965-51712033:+|nuORF ENST00000555574.1_1_14:51706965-51712033:+|nuORF ENST00000555574.1_1_14:51706965-51712033:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.738525390625 2 399.739628 797.464704 NaN NaN NaN NaN NaN NaN NaN 85.584 1 79.409 78.909 79.909 -6.1757 0 0 0 0.7453 1 56377 56377 7.9102 0 1 68746 15228 45725 46748 80330 80330 0.05787014840041138 VGAATSHW 8 Unmodified _VGAATSHW_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.3983154296875 1 828.399878 827.392602 1.1154 0.00092396 -3.714 -0.0030767 -2.5987 -0.0021527 828.396174891602 72.083 0.089645 65.907 65.83 65.919 -6.1757 7 4 2 0 0 0 0.57408 1 47164 47164 28.173 5.0248 1 7989200 + 68747 24348 45726 46749 80331 80331 -0.02799899513672699 VGAAVSMF 8 Unmodified _VGAAVSMF_ 0 0 0 ENST00000468090.5_1_21:45179263-45179407:+|nuORF ENST00000468090.5_1_21:45179263-45179407:+|nuORF ENST00000468090.5_1_21:45179263-45179407:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.1995849609375 2 391.199282 780.384011 NaN NaN NaN NaN NaN NaN NaN 37.739 1 33.37 32.87 33.87 -4.3689 0 0 0 0.97348 1 22182 22182 5.7604 0 1 68748 13799 45727 46750 80332 80332 -0.014965894744932484 VGACRKIQLR 10 Unmodified _VGACRKIQLR_ 0 0 0 REV__ENSG00000091106|ENST00000402280|NLRC4 REV__ENSG00000091106|ENST00000402280|NLRC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5637512207031 3 381.897487 1142.67063 NaN NaN NaN NaN NaN NaN NaN 15.193 1 15.199 14.699 15.699 0.0057774 0 0 0 1.0019 1 7562 7562 0.15932 0.064481 1 + 68749 17880 45728 46751 80333 80333 0.10500264747656729 VGACVPGK 8 Unmodified _VGACVPGK_ 0 0 0 REV__ENST00000464810.5_1_9:35808735-35809439:+|nuORF REV__ENST00000464810.5_1_9:35808735-35809439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.6997375488281 2 365.699449 729.384345 NaN NaN NaN NaN NaN NaN NaN 18.531 1 18.537 18.037 19.037 0.0060463 0 0 0 0.97444 1 9394 9394 0.79363 0 1 + 68750 27381 45729 46752 80334 80334 0.008828302453594006 VGADAWAH 8 Unmodified _VGADAWAH_ 0 0 0 ENST00000471541.2_1_3:75790873-75834630:-|nuORF ENST00000471541.2_1_3:75790873-75834630:-|nuORF ENST00000471541.2_1_3:75790873-75834630:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.3838500976562 1 826.384228 825.376952 -0.0040863 -3.3769E-06 -1.7849 -0.001475 -1.789 -0.0014784 826.3827880612928 90.534 0.23543 90.534 90.437 90.672 0 18 11 2 0 0 0 0.80975 1 50129 50129 0.79363 0 1 503710 68751 13879 45730 46753 80335 80335 -0.04272186030721059 VGADEEHSCI 10 Unmodified _VGADEEHSCI_ 0 0 0 REV__ENSG00000179954|ENST00000389623|SSC5D REV__ENSG00000179954|ENST00000389623|SSC5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.223388671875 2 530.224214 1058.43387 0.55356 0.00029351 -1.6189 -0.00085837 -1.0653 -0.00056486 530.2234749482708 82.608 0.57127 76.432 76.106 76.677 -6.1757 49 32 2 0 0 0 0.68719 1 54243 54243 4.3292 0.38484 1 10391000 + 68752 23130 45731 46754 80336 80336 -0.0930055132716916 VGADHGCD 8 Unmodified _VGADHGCD_ 0 0 0 REV__ENST00000336308.9_1_17:37814089-37814275:+|nuORF REV__ENST00000336308.9_1_17:37814089-37814275:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1467895507812 2 387.147778 772.281002 NaN NaN NaN NaN NaN NaN NaN 64.972 1 64.972 64.472 65.472 0 0 0 0 0.97444 1 36244 36244 0.79363 0 1 + 68753 25645 45732 46755 80337 80337 -0.11424701933117376 VGADICGFV 9 Unmodified _VGADICGFV_ 0 0 0 ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI ENSG00000090402|ENST00000264382|SI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 880.4199829101562 1 880.423316 879.416039 0.088036 7.7509E-05 -2.3516 -0.0020704 -2.2636 -0.0019929 880.421750857028 61.609 0.3196 61.609 61.455 61.775 0 23 14 2 0 0 0 0.39863 1 34424 34424 12.532 1.7076 1 1753400 68754 1556 45733 46756 80338 80338 -0.028492217913481 VGADRGFS 8 Unmodified _VGADRGFS_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.701416015625 2 404.701035 807.387516 -0.60131 -0.00024335 0.47503 0.00019225 -0.12628 -5.1107E-05 404.70118341757745 18.113 0.69641 18.113 17.574 18.27 0 261 108 3 0 0 0 0.80311 1 8687 8687 4.756 0 1 6650900 + 68755 17497 45734 46757 80339 80339 -0.023882033762788524 VGADSLIE 8 Unmodified _VGADSLIE_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2112426757812 2 402.210901 802.407249 NaN NaN NaN NaN NaN NaN NaN 28.656 1 28.656 28.156 29.156 0 0 0 0 0.97444 1 14811 14811 2.5775 0 1 + 68756 19619 45735 46758 80340 80340 -0.0018587215618026676 VGADTGSKSI 10 Unmodified _VGADTGSKSI_ 0 0 0 ENSG00000171316|ENST00000423902|CHD7;CHD7|p.T2283Nfs*20|1|0.05|ENSG00000171316|chr8:60854431-60854432|-/A|frameshift_variant ENSG00000171316|ENST00000423902|CHD7 ENSG00000171316|ENST00000423902|CHD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7456359863281 2 467.745639 933.476725 NaN NaN NaN NaN NaN NaN NaN 25.093 1 25.076 24.576 25.576 -0.017006 0 0 0 0.96981 1 12841 12841 3.9444 1.0552 1 68757 8091 45736 46759 80341 80341 0.007325867925828788 VGADVCGFL 9 Unmodified _VGADVCGFL_ 0 0 0 ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA ENSG00000171298|ENST00000302262|GAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 880.4207763671875 1 880.423316 879.416039 0.088036 7.7509E-05 -2.3516 -0.0020704 -2.2636 -0.0019929 880.421750857028 61.609 0.3196 61.609 61.455 61.775 0 23 14 2 0 0 0 0.14602 1 34323 34323 28.487 1.6032 1 1753400 68758 8086 45737 46760 80342 80342 -0.028492217913481 VGADVLDLA 9 Unmodified _VGADVLDLA_ 0 0 0 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.482177734375 1 872.472374 871.465098 0.30056 0.00026223 -0.5001 -0.00043632 -0.19955 -0.0001741 872.471722564734 59.364 0.4287 59.364 59.148 59.577 0 48 18 4 0 0 0 0.5029 1 33053 33053 7.2892 0 1 30472000 68759 1472 45738 46761 80343 80343 0.024223897692309038 VGAEAIGAAL 10 Unmodified _VGAEAIGAAL_ 0 0 0 REV__ENST00000377748.5_1_1:6579769-6580027:-|nuORF REV__ENST00000377748.5_1_1:6579769-6580027:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2478942871094 2 436.247818 870.481082 -0.46367 -0.00020228 -0.27618 -0.00012048 -0.73985 -0.00032276 436.2476743922401 27.065 0.454 27.065 26.761 27.215 0 45 21 3 0 0 0 0.037795 2 13891 13891;13990 64.236 18.537 1 9854400 + 68760 26252 45739 46762 80344;80345 80344 0.04066096006135922 VGAEDLIIY 9 Unmodified _VGAEDLIIY_ 0 0 0 REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F REV__nc|ENSG00000133477|Q8NEG4-2|FAM83F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 995.4493408203125 1 992.529889 991.522613 0.046451 4.6104E-05 -0.72922 -0.00072377 -0.68277 -0.00067767 992.5288023822783 56.819 0.50235 56.819 56.609 57.111 0 52 21 4 0 0 0 0.54444 1 31587 31587 4.756 2.4533 1 13270000 + 68761 19925 45740 46763 80346 80346 0.026512319748121627 VGAEEEANGDR 11 Unmodified _VGAEEEANGDR_ 0 0 0 ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4 ENST00000559327.1_1_15:65676349-65688574:-|nuORF ENST00000559327.1_1_15:65676349-65688574:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.8380432128906 3 382.838908 1145.49489 NaN NaN NaN NaN NaN NaN NaN 12.303 1 9.8208 9.3208 10.321 -2.482 0 0 0 0.94184 1 6217 6217 0.40827 0 1 68762 2160 45741 46764 80347 80347 -0.07203323023395569 VGAFGGRH 8 Unmodified _VGAFGGRH_ 0 0 0 REV__ENSG00000185105|ENST00000409745|MYADML2 REV__ENSG00000185105|ENST00000409745|MYADML2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.7116394042969 2 400.711737 799.40892 -0.01906 -7.6376E-06 1.4182 0.00056828 1.3991 0.00056064 400.7123057089925 38.661 0.28399 38.672 38.517 38.801 0.011452 17 13 2 0 0 0 0.80975 1 20562 20562 0.79363 0.79363 1 2410100 + 68763 23473 45742 46765 80348 80348 0.0011922644307560404 VGAFGHDL 8 Unmodified _VGAFGHDL_ 0 0 0 REV__nc|ENSG00000077549|P47756-1|CAPZB REV__nc|ENSG00000077549|P47756-1|CAPZB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2056884765625 2 408.205953 814.397353 NaN NaN NaN NaN NaN NaN NaN 24.751 1 24.775 24.275 25.275 0.024429 0 0 0 0.9706 1 12781 12781 6.3541 3.4649 1 + 68764 17614 45743 46766 80349 80349 -0.01727015370920526 VGAFMKKFH 9 Unmodified _VGAFMKKFH_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.29052734375 2 532.78913 1063.56371 1.0253 0.00054628 0.67205 0.00035806 1.6974 0.00090434 532.7904900849459 50.499 1.5046 44.96 44.377 45.881 -5.5391 261 94 4 0 0 0 0.39863 1 31990 31990 12.532 1.4171 1 351410000 + 68765 23893 45744 46767 80350 80350 0.034467145332882865 VGAFPRGEKL 10 Unmodified _VGAFPRGEKL_ 0 0 0 REV__nc|ENSG00000187605|O43151-2|TET3 REV__nc|ENSG00000187605|O43151-2|TET3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5425109863281 3 358.541586 1072.60293 0.84735 0.00030381 0.55943 0.00020058 1.4068 0.00050439 358.54183075933105 16.501 0.20464 13.944 13.839 14.044 -2.557 57 29 3 0 0 0 0.66569 1 8512 8512 3.5871 1.0886 1 5377800 + 68766 23644 45745 46768 80351 80351 0.06953138088510968 VGAGAGGG 8 Unmodified _VGAGAGGG_ 0 0 0 ENSG00000116954|ENST00000373001|RRAGC;ENST00000537025.6_1_17:66032291-66032333:+|nuORF ENSG00000116954|ENST00000373001|RRAGC;REV__nc|ENSG00000161681|Q9Y566-2|SHANK1 ENSG00000116954|ENST00000373001|RRAGC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.82177734375 1 545.267801 544.260525 1.1373 0.00062014 2.7572 0.0015034 3.8945 0.0021236 545.2688832744824 70.848 0.44759 70.883 70.658 71.106 0.035515 34 20 2 0 0 0 8.7369 1 38933 38933 2.8892 0 1 4032400 68767 3269;21605 45746 46769 80352 80352 -0.02983504530607206 VGAGIQHLQKL 11 Unmodified _VGAGIQHLQKL_ 0 0 0 ENST00000573385.1_1_17:6350773-6352728:+|nuORF;ENSG00000129195|ENST00000572447|PIMREG;nc|ENSG00000129195|Q9BSJ6|PIMREG ENST00000573385.1_1_17:6350773-6352728:+|nuORF ENST00000573385.1_1_17:6350773-6352728:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.568115234375 3 388.568024 1162.68224 -0.4823 -0.00018741 1.0099 0.0003924 0.52757 0.000205 388.5683616081006 19.42 0.065762 19.448 19.424 19.489 0.028357 11 7 2 0 0 0 0.73115 1 9791 9791 0.45452 0.21867 1 237460 68768 4120 45747 46770 80353 80353 0.10740785042662537 VGAGSGGA 8 Unmodified _VGAGSGGA_ 0 0 0 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 ENSG00000180613|ENST00000326902|GSX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 575.3135986328125 1 575.278366 574.271089 2.1597 0.0012424 -2.9357 -0.0016889 -0.77603 -0.00044643 575.2763551431643 62.586 0.35531 56.41 56.23 56.586 -6.1757 24 17 2 0 0 0 8.7369 1 40491 40491 2.8892 0 1 7972900 68769 8912 45748 46771 80354 80354 -0.033075218761950964 VGAGYNNQIST 11 Unmodified _VGAGYNNQIST_ 0 0 0 REV__nc|ENSG00000144559|Q96BW9|TAMM41 REV__nc|ENSG00000144559|Q96BW9|TAMM41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2734375 2 562.272552 1122.53055 -0.15908 -8.9448E-05 1.5129 0.00085067 1.3538 0.00076123 562.2740902909898 20.669 0.10387 20.669 20.625 20.729 0 9 6 2 0 0 0 0.7326 1 10423 10423 1.1933 0.39971 1 339420 + 68770 29679 45749 46772 80355 80355 -0.025812407757030087 VGAHIAIL 8 Unmodified _VGAHIAIL_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2498474121094 2 397.250163 792.485774 -0.049647 -1.9722E-05 -0.93012 -0.00036949 -0.97976 -0.00038921 397.24969120305786 22.822 0.28719 22.834 22.71 22.997 0.012394 16 13 2 0 0 0 0.70131 1 11606 11606 17.087 0 1 4348100 68771 10397 45750 46773 80356 80356 0.08123024939561674 VGAHIAIL 8 Unmodified _VGAHIAIL_ 0 0 0 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 ENSG00000206384|ENST00000358511|COL6A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.2502136230469 2 397.250163 792.485774 -0.021316 -8.4676E-06 0.33973 0.00013496 0.31841 0.00012649 397.2502488870921 25.64 0.43669 22.689 22.518 22.955 -2.9511 42 26 3 0 0 0 0.70131 1 14057 14057 17.087 0 1 9640100 68772 10397 45750 46773 80357 80357 0.08123024939561674 VGAHPDTL 8 Unmodified _VGAHPDTL_ 0 0 0 REV__nc|ENSG00000065883|Q14004-2|CDK13 REV__nc|ENSG00000065883|Q14004-2|CDK13 MSMS AL20221201_MKP_PDAC_01 4 405.2132568359375 2 405.211235 808.407917 NaN NaN NaN NaN NaN NaN NaN 59.198 1 53.123 52.623 53.623 -6.0745 0 0 0 0.95607 1 37985 37985 9.3474 1.4373 1 + 68773 17390 45751 46774 80358 80358 -0.003950327164830014 VGAHTREHVIL 11 Unmodified _VGAHTREHVIL_ 0 0 0 REV__nc|ENSG00000090612|Q14587-2|ZNF268 REV__nc|ENSG00000090612|Q14587-2|ZNF268 MSMS AL20221201_MKP_PDAC_01 4 411.2371826171875 3 411.235045 1230.6833 NaN NaN NaN NaN NaN NaN NaN 86.249 1 80.073 79.573 80.573 -6.1757 0 0 0 0.79635 1 56852 56852 13.519 6.0416 1 + 68774 17865 45752 46775 80359 80359 0.0771899941155425 VGAHVHGI 8 Unmodified _VGAHVHGI_ 0 0 0 ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.221435546875 2 395.221937 788.429321 NaN NaN NaN NaN NaN NaN NaN 33.744 1 33.744 33.244 34.244 0 0 0 0 0.9706 1 17724 17724 6.3541 0 1 68775 15592 45753 46776 80360 80360 0.02664397102910243 VGAHVHGI 8 Unmodified _VGAHVHGI_ 0 0 0 ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2222595214844 2 395.221937 788.429321 -0.076993 -3.0429E-05 1.4738 0.00058247 1.3968 0.00055204 395.2224190135248 33.505 0.72006 33.534 33.253 33.973 0.028934 68 31 3 0 0 0 0.80975 3 17544 17544;17644;17749 0.79363 0 1 5931000 68776 15592 45753 46776 80361;80362;80363 80361 0.02664397102910243 VGAHVHGI 8 Unmodified _VGAHVHGI_ 0 0 0 ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF ENST00000584342.5_1_17:27052953-27062286:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2235412597656 2 395.221937 788.429321 -0.2096 -8.284E-05 1.6112 0.00063677 1.4016 0.00055393 395.22248101926317 35.622 0.45782 35.647 35.328 35.786 0.024967 35 21 2 0 0 0 0.80624 1 18717 18717 2.8892 2.8892 1 4974800 68777 15592 45753 46776 80364 80364 0.02664397102910243 VGAHVLMYSI 10 Unmodified _VGAHVLMYSI_ 0 0 0 REV__ENSG00000158315|ENST00000372990|RHBDL2 REV__ENSG00000158315|ENST00000372990|RHBDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2941284179688 2 545.291702 1088.56885 -0.19446 -0.00010604 4.1475 0.0022616 3.9531 0.0021556 545.2939243118084 23.903 0.14279 23.903 23.832 23.975 0 9 6 2 0 0 0 0.6606 1 12214 12214 7.2892 2.0586 1 343300 + 68778 21427 45754 46777 80365 80365 0.0281097360525564 VGAIACLT 8 Unmodified _VGAIACLT_ 0 0 0 REV__ENSG00000143105|ENST00000369771|KCNA10 REV__ENSG00000143105|ENST00000369771|KCNA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2066040039062 2 374.207107 746.399661 0.35346 0.00013227 -0.7084 -0.00026509 -0.35494 -0.00013282 374.2066689822068 59.195 0.40518 59.141 58.887 59.292 -0.054344 48 19 3 0 0 0 0.80975 1 32269 32269 0.79363 0 1 10406000 + 68779 20603 45755 46778 80366 80366 0.016316970425236832 VGAICSTGELF 11 Unmodified _VGAICSTGELF_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.2704467773438 2 548.7708 1095.52705 0.63007 0.00034576 3.7505 0.0020581 4.3805 0.0024039 548.773295577374 99.575 0.29773 93.399 93.243 93.541 -6.1757 28 18 2 0 0 0 0.26388 1 66417 66417 25.399 0 1 16702000 + 68780 29813 45756 46779 80367 80367 -0.01689626873940142 VGAIHFPF 8 Unmodified _VGAIHFPF_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000013573|Q96FC9|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000536265.5_1_12:31227017-31242486:+|nuORF;ENST00000535158.5_1_12:31227017-31242187:+|nuORF;nc|ENSG00000013573|Q96FC9-5|DDX11 nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2431640625 2 444.242338 886.470124 NaN NaN NaN NaN NaN NaN NaN 45.276 1 45.276 44.776 45.776 0 0 0 0 0.97444 1 24669 24669 2.8892 0 1 68781 479 45757 46780 80368 80368 0.02234738422509963 VGAISLAFY 9 Unmodified _VGAISLAFY_ 0 0 0 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7629089355469 2 470.760561 939.506569 0.14242 6.7045E-05 0.93465 0.00043999 1.0771 0.00050704 470.76074114333846 39.179 0.52749 39.19 38.962 39.489 0.011456 35 24 2 0 0 0 0.48152 1 20854 20854 8.5933 0 1 689510 68782 525 45758 46781 80369 80369 0.03439570528553304 VGAISLAFY 9 Unmodified _VGAISLAFY_ 0 0 0 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.759765625 2 470.760561 939.506569 NaN NaN NaN NaN NaN NaN NaN 39.548 1 39.559 39.059 40.059 0.011452 0 0 0 0.84369 1 21067 21067 2.3027 0 1 68783 525 45758 46781 80370 80370 0.03439570528553304 VGAKAAEL 8 Unmodified _VGAKAAEL_ 0 0 0 ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483832.5_1_1:155581756-155582119:+|nuORF;nc|ENSG00000125459|Q9BUK6-5|MSTO1;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1 ENST00000494995.5_1_1:155580896-155583988:+|nuORF ENST00000494995.5_1_1:155580896-155583988:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.725341796875 2 379.723978 757.433404 NaN NaN NaN NaN NaN NaN NaN 49.653 1 49.604 49.104 50.104 -0.048824 0 0 0 0.97348 1 26835 26835 5.7604 0.52976 1 68784 14344 45759 46782 80371 80371 0.044984418059470954 VGAKCHITGHI 11 Unmodified _VGAKCHITGHI_ 0 0 0 REV__ENSG00000150628|ENST00000280191|SPATA4 REV__ENSG00000150628|ENST00000280191|SPATA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8608093261719 3 379.206209 1134.5968 -0.55434 -0.00021021 -1.541 -0.00058434 -2.0953 -0.00079455 379.5401303297458 14.878 0.037294 14.847 14.825 14.862 -0.030868 15 10 2 0 0 0 0.72952 1 7267 7267 0.50596 0.051438 1 447800 + 68785 21029 45760 46783 80372 80372 0.03488296585351236 VGAKGARAP 9 Unmodified _VGAKGARAP_ 0 0 0 nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-3|ARHGAP22;ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22 nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 413.1996459960938 2 413.748319 825.482085 1.4365 0.00059436 -0.18962 -7.8455E-05 1.2469 0.00051591 413.7483718581275 37.293 0.23347 33.009 32.923 33.156 -4.2835 23 13 2 0 0 0 0.21367 1 21837 21837 4.756 2.1785 1 4752000 68786 4091 45761 46784 80373 80373 0.06236355165697205 VGAKHGFTL 9 Unmodified _VGAKHGFTL_ 0 0 0 ENSG00000204740|ENST00000454679|MALRD1 ENSG00000204740|ENST00000454679|MALRD1 ENSG00000204740|ENST00000454679|MALRD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2653198242188 2 465.263802 928.513051 0.65964 0.00030691 1.6317 0.00075915 2.2913 0.0010661 465.26459864411834 43.522 0.50843 38.757 38.525 39.034 -4.7648 56 32 3 0 0 0 0.08691 1 26492 26492 36.127 5.4905 1 16546000 68787 10324 45762 46785 80374 80374 0.04593508479945285 VGAKQPHA 8 Unmodified _VGAKQPHA_ 0 0 0 REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6 REV__nc|ENSG00000105676|Q6NXE6-2|ARMC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8913879394531 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 16.955 1 16.96 16.46 17.46 0.0050564 0 0 0 0.97444 1 8527 8527 0.79363 0 1 + 68788 18446 45763 46786 80375 80375 0.028923797573156662 VGAKRCKH 8 Unmodified _VGAKRCKH_ 0 0 0 REV__ENSG00000117525|ENST00000334047|F3 REV__ENSG00000117525|ENST00000334047|F3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.7565612792969 2 449.755621 897.49669 NaN NaN NaN NaN NaN NaN NaN 21.544 1 21.573 21.073 22.073 0.028357 0 0 0 0.97444 1 10936 10936 0.79363 0 1 + 68789 19113 45764 46787 80376 80376 0.043841040421852995 VGALQLVY 8 Unmodified _VGALQLVY_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 431.7549438476562 2 431.755278 861.496004 0.67075 0.0002896 -0.29769 -0.00012853 0.37306 0.00016107 431.75476904718323 73.506 0.27336 73.031 72.871 73.144 -0.47588 16 11 2 0 0 0 0.80624 1 40262 40262 2.8892 0 1 649980 + 68790 22551 45765 46788 80377 80377 0.059715878741258166 VGALQLVY 8 Unmodified _VGALQLVY_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 863.5051879882812 1 862.503281 861.496004 0.37772 0.00032579 -1.2311 -0.0010618 -0.8534 -0.00073606 862.5023270421124 72.99 0.32447 73.032 72.88 73.205 0.041733 24 15 2 0 0 0 0.72953 1 40257 40257 14.582 0 1 4806000 + 68791 22551 45765 46788 80378 80378 0.059715878741258166 VGALQLVY 8 Unmodified _VGALQLVY_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MSMS AL20221201_MKP_PDAC_01 4 431.7551574707031 2 431.755278 861.496004 NaN NaN NaN NaN NaN NaN NaN 80.658 1 74.482 73.982 74.982 -6.1757 0 0 0 0.70013 1 52923 52923 28.173 0 1 + 68792 22551 45765 46788 80379 80379 0.059715878741258166 VGAPKPGP 8 Unmodified _VGAPKPGP_ 0 0 0 REV__ENST00000459704.6_1_20:61593743-61595647:+|nuORF REV__ENST00000459704.6_1_20:61593743-61595647:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.7136535644531 2 361.713414 721.412274 1.7789 0.00064345 1.3006 0.00047046 3.0795 0.0011139 361.71347147422694 55.573 0.29191 49.652 49.474 49.766 -5.9211 21 17 2 0 0 0 0.80624 1 35403 35403 2.8892 0 1 6925700 + 68793 27280 45766 46789 80380 80380 0.040424764970907745 VGAPLVCCEI 10 Carbamidomethyl (C) _VGAPLVC(Carbamidomethyl (C))CEI_ VGAPLVC(0.5)C(0.5)EI VGAPLVC(0)C(0)EI 0 1 0 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 ENSG00000123983|ENST00000357430|ACSL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7620849609375 2 530.76192 1059.50929 0.31154 0.00016535 0.77535 0.00041152 1.0869 0.00057688 530.7623722066382 62.59 0.42242 62.59 62.4 62.823 0 50 21 3 0 0 0 0.13184 1 34902 34902 42.095 7.9072 2 7849400 68794 3739 45767 46790 80381 80381 371;372 -0.01808665400449172 VGAPRTQPLF 10 Unmodified _VGAPRTQPLF_ 0 0 0 REV__ENST00000600437.1_1_19:39989581-39996225:+|nuORF REV__ENST00000600437.1_1_19:39989581-39996225:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5419616699219 3 362.541586 1084.60293 1.1725 0.00042508 0.29984 0.0001087 1.4723 0.00053378 362.54190227255924 39.747 0.24707 35.296 35.123 35.37 -4.4509 23 15 2 0 0 0 0.64183 1 23639 23639 8.9762 1.3673 1 13248000 + 68795 17874 45768 46791 80382 80382 0.06401138088517655 VGAPRYLHDL 10 Unmodified _VGAPRYLHDL_ 0 0 0 REV__ENST00000602351.5_1_19:49653388-49653682:+|nuORF REV__ENST00000602351.5_1_19:49653388-49653682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8761901855469 3 380.876857 1139.60874 -0.73756 -0.00028092 0.5002 0.00019052 -0.23736 -9.0405E-05 380.87698334628305 32.018 0.24587 32.018 31.9 32.146 0 27 11 3 0 0 0 0.68719 1 16681 16681 4.1895 1.691 1 3671300 + 68796 29261 45769 46792 80383 80383 0.04452236600195647 VGAQAVYPF 9 Unmodified _VGAQAVYPF_ 0 0 0 REV__ENST00000538682.5_1_11:62651934-62653989:+|nuORF REV__ENST00000538682.5_1_11:62651934-62653989:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.2495422363281 2 476.25036 950.486168 NaN NaN NaN NaN NaN NaN NaN 46.802 1 41.721 41.221 42.221 -5.0805 0 0 0 0.54015 1 28975 28975 14.582 2.0501 1 + 68797 28561 45770 46793 80384 80384 0.00894399868752771 VGAQRCPI 8 Unmodified _VGAQRCPI_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2276611328125 2 422.228905 842.443257 0.2522 0.00010649 -1.6318 -0.00068899 -1.3796 -0.0005825 422.2278765442281 52.933 0.36813 52.933 52.773 53.141 0 38 17 3 0 0 0 0.80624 1 29392 29392 2.8892 0 1 8166400 68798 4295 45771 46794 80385 80385 0.015733065396602797 VGAQRCPI 8 Unmodified _VGAQRCPI_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 422.228905 842.443257 0.42105 0.00017778 -1.1156 -0.00047103 -0.69454 -0.00029326 422.2279708243569 53.432 0.28448 52.98 52.803 53.087 -0.45173 0.01241 0.00048545 NaN 2.8892 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3567700 68799 4295 45771 46794 0.015733065396602797 VGAQRCPI 8 Unmodified _VGAQRCPI_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000481284.5_1_20:33462930-33515014:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.228905 842.443257 0.27686 0.0001169 -1.8076 -0.00076323 -1.5308 -0.00064634 422.22803937277445 53.054 0.35461 52.99 52.782 53.136 -0.063423 0.022541 -9.8946E-05 NaN 2.8892 56 17 4 NaN NaN NaN NaN 0 NaN NaN 0 38004000 68800 4295 45771 46794 0.015733065396602797 VGAQRNVLIF 10 Unmodified _VGAQRNVLIF_ 0 0 0 ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF ENST00000419827.2_1_7:10491071-10492091:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8894348144531 3 372.888986 1115.64513 1.4844 0.00055353 1.7865 0.00066615 3.2709 0.0012197 372.88984307618796 42.512 0.67685 37.828 37.317 37.994 -4.6846 70 44 2 0 0 0 0.6192 1 25552 25552 10.151 3.5202 1 50559000 68801 13095 45772 46795 80386 80386 0.09193113496894512 VGARIYHTI 9 Unmodified _VGARIYHTI_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.2962036132812 2 515.295633 1028.57671 0.5139 0.00026481 0.73379 0.00037812 1.2477 0.00064293 515.296111545182 28.572 0.21033 28.51 28.392 28.602 -0.06216 15 7 3 0 0 0 0.0082661 1 14747 14747 92.491 50.397 1 6108200 68802 389 45773 46796 80387 80387 0.06356868917032443 VGARIYHTI 9 Unmodified _VGARIYHTI_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2965087890625 2 515.295633 1028.57671 0.32169 0.00016576 1.3115 0.00067581 1.6332 0.00084158 515.2963292745018 28.412 0.21159 28.442 28.332 28.544 0.029564 14 8 2 0 0 0 0.0090948 1 14796 14796 85.272 52.967 1 2589700 68803 389 45773 46796 80388 80388 0.06356868917032443 VGARIYHTI 9 Unmodified _VGARIYHTI_ 0 0 0 ENSG00000008394|ENST00000396210|MGST1;ENST00000539708.5_1_12:16513351-16516972:+|nuORF ENSG00000008394|ENST00000396210|MGST1 ENSG00000008394|ENST00000396210|MGST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2966918945312 2 515.295633 1028.57671 1.0247 0.00052802 -0.31443 -0.00016203 0.71026 0.00036599 515.295499440068 32.301 0.48295 28.445 28.249 28.732 -3.8562 48 27 2 0 0 0 0.010611 2 18322 18322;18451 78.728 44.626 1 112720000 68804 389 45773 46796 80389;80390 80389 0.06356868917032443 VGARLGTG 8 Unmodified _VGARLGTG_ 0 0 0 REV__ENSG00000237289|ENST00000441322|CKMT1B REV__ENSG00000237289|ENST00000441322|CKMT1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.7135925292969 2 365.713945 729.413337 NaN NaN NaN NaN NaN NaN NaN 18.335 1 18.358 17.858 18.858 0.023106 0 0 0 0.97444 1 9186 9186 2.5775 0 1 + 68805 24371 45774 46797 80391 80391 0.03780690866005898 VGARWGEVEM 10 Unmodified _VGARWGEVEM_ 0 0 0 REV__ENST00000222990.7_1_7:2292615-2292720:-|nuORF REV__ENST00000222990.7_1_7:2292615-2292720:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.188232421875 3 378.518453 1132.53353 NaN NaN NaN NaN NaN NaN NaN 18.578 1 18.578 18.078 19.078 0 0 0 0 0.99091 1 9246 9246 0.69767 0.42865 1 + 68806 24766 45775 46798 80392 80392 -0.027436889225555205 VGASLSLLFL 10 Unmodified _VGASLSLLFL_ 0 0 0 REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.3106689453125 2 510.310418 1018.60628 0.61838 0.00031557 -0.53382 -0.00027242 0.084557 4.315E-05 510.31025704200954 79.417 0.39072 78.927 78.727 79.117 -0.48932 40 16 3 0 0 0 0.14917 2 43551 43451;43551 39.957 5.0209 1 4254100 + 68807 28082 45776 46799 80393;80394 80394 0.09772388142516775 VGASLSLLFL 10 Unmodified _VGASLSLLFL_ 0 0 0 REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF REV__ENST00000506102.5_1_3:125725861-125741959:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 510.310418 1018.60628 0.61838 0.00031557 -0.53382 -0.00027242 0.084557 4.315E-05 510.31025704200954 79.417 0.39072 78.927 78.727 79.117 -0.48932 0 0 NaN 39.957 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 4254100 + 68808 28082 45776 46799 0.09772388142516775 VGASRPLR 8 Unmodified _VGASRPLR_ 0 0 0 REV__ENST00000342115.8_1_1:110162645-110168822:+|nuORF REV__ENST00000342115.8_1_1:110162645-110168822:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 428.2617492675781 2 428.261594 854.508634 NaN NaN NaN NaN NaN NaN NaN 20.363 1 17.67 17.17 18.17 -2.693 0 0 0 0.95973 1 10848 10848 8.5933 0 1 + 68809 25713 45777 46800 80395 80395 0.0755604405703707 VGASSVLLV 9 Unmodified _VGASSVLLV_ 0 0 0 ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB ENSG00000103642|ENST00000261893|LACTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.5170288085938 1 844.513845 843.506569 0.047128 3.98E-05 1.7552 0.0014823 1.8023 0.0015221 844.5154524444016 71.94 0.27846 71.464 71.293 71.572 -0.47609 17 10 2 0 0 0 0.28047 1 39328 39328 18.135 1.1927 1 873500 68810 2156 45778 46801 80396 80396 0.07855570528579392 VGASTAAF 8 Unmodified _VGASTAAF_ 0 0 0 REV__ENST00000240100.6_1_8:29207880-29208030:-|nuORF REV__ENST00000240100.6_1_8:29207880-29208030:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.2099304199219 2 362.187229 722.359904 1.3546 0.00049063 -1.3875 -0.00050255 -0.032916 -1.1922E-05 362.1867820156124 43.512 0.33533 38.747 38.65 38.985 -4.7648 31 20 2 0 0 0 8.7369 1 26588 26588 2.8892 0 1 9373900 + 68811 24840 45779 46802 80397 80397 -0.012381066365264815 VGATYTERS 9 Unmodified _VGATYTERS_ 0 0 0 REV__ENST00000405430.5_1_2:263285-264143:-|nuORF REV__ENST00000405430.5_1_2:263285-264143:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2420654296875 2 492.243264 982.471974 NaN NaN NaN NaN NaN NaN NaN 24.393 1 24.393 23.893 24.893 0 0 0 0 0.84892 1 12466 12466 1.6526 0.85899 1 + 68812 26646 45780 46803 80398 80398 -0.019962973501833403 VGAVGGGPF 9 Unmodified _VGAVGGGPF_ 0 0 0 REV__ENST00000597921.5_1_19:7763674-7766904:-|nuORF REV__ENST00000597921.5_1_19:7763674-7766904:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.7034301757812 2 380.703046 759.391539 -0.5524 -0.0002103 0.9185 0.00034968 0.3661 0.00013938 380.7035213134246 18.641 0.1876 18.664 18.556 18.743 0.023106 35 26 2 0 0 0 0.58466 1 9387 9387 2.3027 0 1 303180 + 68813 29225 45781 46804 80399 80399 0.0022188611742421926 VGAVGGGPF 9 Unmodified _VGAVGGGPF_ 0 0 0 REV__ENST00000597921.5_1_19:7763674-7766904:-|nuORF REV__ENST00000597921.5_1_19:7763674-7766904:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.7028198242188 2 380.703046 759.391539 NaN NaN NaN NaN NaN NaN NaN 18.515 1 18.538 18.038 19.038 0.023106 0 0 0 0.84369 1 9288 9288 2.3027 0 1 + 68814 29225 45781 46804 80400 80400 0.0022188611742421926 VGAVMNPTEVF 11 Unmodified _VGAVMNPTEVF_ 0 0 0 nc|ENSG00000087510|Q92754-2|TFAP2C;TFAP2C|p.P380Rfs*57|1|0.25|ENSG00000087510|chr20:56637799-56637800|CA/-|frameshift_variant;ENSG00000087510|ENST00000201031|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.2915649414062 2 582.291899 1162.56925 0.779 0.00045361 -3.9142 -0.0022792 -3.1352 -0.0018256 582.2900581562146 75.659 0.11384 69.483 69.429 69.543 -6.1757 7 5 2 0 0 0 0.27675 1 49452 49452 20.415 5.1661 1 8292300 68815 1473 45782 46805 80401 80401 -0.00553651465565963 VGAVMNPTEVF 11 Unmodified _VGAVMNPTEVF_ 0 0 0 nc|ENSG00000087510|Q92754-2|TFAP2C;TFAP2C|p.P380Rfs*57|1|0.25|ENSG00000087510|chr20:56637799-56637800|CA/-|frameshift_variant;ENSG00000087510|ENST00000201031|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 582.291899 1162.56925 -0.14471 -8.4264E-05 -0.45951 -0.00026757 -0.60423 -0.00035184 582.2919928426687 69.736 0.20084 69.257 69.223 69.424 -0.47903 -0.1132 0.0010747 NaN 15.248 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 436290 68816 1473 45782 46805 -0.00553651465565963 VGAVVADT 8 Unmodified _VGAVVADT_ 0 0 0 ENST00000573596.1_1_17:7080113-7080528:-|nuORF ENST00000573596.1_1_17:7080113-7080528:-|nuORF ENST00000573596.1_1_17:7080113-7080528:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1997680664062 2 366.200336 730.386119 NaN NaN NaN NaN NaN NaN NaN 15.484 1 15.49 14.99 15.99 0.0057774 0 0 0 0.97444 1 7718 7718 2.5775 0 1 68817 15502 45783 46806 80402 80402 0.010141625349319838 VGAVVTVLML 10 Oxidation (M) _VGAVVTVLM(Oxidation (M))L_ VGAVVTVLM(1)L VGAVVTVLM(42)L 0 0 1 REV__ENSG00000134243|ENST00000256637|SORT1 REV__ENSG00000134243|ENST00000256637|SORT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.304931640625 2 509.304278 1016.594 0.38809 0.00019766 -0.094956 -4.8361E-05 0.29314 0.0001493 509.3043066895073 72.729 0.3465 72.253 72.083 72.429 -0.47588 45 15 4 0 0 0 0.13184 1 39776 39776 42.095 6.0504 1 5333700 + 68818 19964 45784 46807 80403 80403 1841 0.08637028407827074 VGAVVTVLML 10 Oxidation (M) _VGAVVTVLM(Oxidation (M))L_ 0 0 1 REV__ENSG00000134243|ENST00000256637|SORT1 REV__ENSG00000134243|ENST00000256637|SORT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 509.304278 1016.594 0.4441 0.00022618 -2.1239 -0.0010817 -1.6798 -0.00085555 509.30346837116326 72.256 0.28797 72.298 72.132 72.42 0.041725 0.022465 -0.0017007 NaN 42.095 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2299400 + 68819 19964 45784 46807 1841 0.08637028407827074 VGAWFGKAF 9 Unmodified _VGAWFGKAF_ 0 0 0 REV__ENSG00000135837|ENST00000367607|CEP350 REV__ENSG00000135837|ENST00000367607|CEP350 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2061157226562 2 491.760895 981.507237 -0.23595 -0.00011603 1.1135 0.00054757 0.87753 0.00043154 491.7610420380892 48.378 0.44471 48.378 48.193 48.638 0 48 21 3 0 0 0 0.203 1 26701 26701 5.2307 0 1 40378000 + 68820 20101 45785 46808 80404 80404 0.01574409968281998 VGAWPPGA 8 Unmodified _VGAWPPGA_ 0 0 0 nc|ENSG00000170364|Q53H47-2|SETMAR;nc|ENSG00000170364|Q53H47-3|SETMAR;ENSG00000170364|ENST00000358065|SETMAR nc|ENSG00000170364|Q53H47-2|SETMAR nc|ENSG00000170364|Q53H47-2|SETMAR MSMS AL20221201_MKP_PDAC_01 4 377.6985473632812 2 377.697764 753.380974 NaN NaN NaN NaN NaN NaN NaN 92.238 1 86.062 85.562 86.562 -6.1757 0 0 0 0.97444 1 60990 60990 2.8892 2.0956 1 68821 7975 45786 46809 80405 80405 -0.005580965370086233 VGAWRGLN 8 Unmodified _VGAWRGLN_ 0 0 0 ENST00000586616.5_1_19:1483766-1490130:-|nuORF;ENST00000441747.6_1_19:1482426-1490130:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF ENST00000586616.5_1_19:1483766-1490130:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7411193847656 2 436.740494 871.466435 0.09591 4.1888E-05 2.2914 0.0010008 2.3873 0.0010426 436.7416690596141 69.134 0.23413 68.654 68.506 68.74 -0.48071 13 9 2 0 0 0 0.80676 1 37821 37821 2.5775 0 1 492720 68822 13399 45787 46810 80406 80406 0.025560686486642226 VGAWRQAA 8 Unmodified _VGAWRQAA_ 0 0 0 REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7334899902344 2 429.732669 857.450785 0.37973 0.00016318 1.2428 0.00053408 1.6226 0.00069726 429.73318193406783 59.595 0.44091 59.542 59.273 59.714 -0.053062 60 22 4 0 0 0 0.80676 1 32364 32364 2.5775 0 1 32856000 + 68823 27579 45788 46811 80407 80407 0.01635782131609176 VGAWRQAA 8 Unmodified _VGAWRQAA_ 0 0 0 REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.732669 857.450785 0.31749 0.00013644 0.87531 0.00037615 1.1928 0.00051259 429.7329609087934 59.452 0.34191 59.452 59.285 59.627 0 0.0027694 -0.00014614 NaN 2.5775 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4026200 + 68824 27579 45788 46811 0.01635782131609176 VGAWRQAA 8 Unmodified _VGAWRQAA_ 0 0 0 REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF REV__ENST00000475696.5_1_2:220110350-220111398:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 429.732669 857.450785 0.22774 9.7866E-05 0.95622 0.00041092 1.184 0.00050878 429.73295257901077 59.845 0.29277 59.354 59.234 59.527 -0.49079 -0.095525 -7.6603E-05 NaN 2.5775 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1449700 + 68825 27579 45788 46811 0.01635782131609176 VGAYMKETY 9 Unmodified _VGAYMKETY_ 0 0 0 nc|ENSG00000161533|Q15067-3|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;nc|ENSG00000161533|Q15067|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 nc|ENSG00000161533|Q15067-3|ACOX1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 531.27880859375 2 531.252243 1060.48993 0.42687 0.00022677 2.3515 0.0012492 2.7783 0.001476 531.2536011386889 82.435 0.36126 76.26 76.044 76.405 -6.1757 29 19 2 0 0 0 0.17666 1 54080 54080 19.439 10.092 1 12788000 68826 6793 45789 46812 80408 80408 -0.03789298419678744 VGCDQDRNGCG 11 Unmodified _VGCDQDRNGCG_ 0 0 0 REV__ENST00000473905.6_1_1:155026903-155028315:+|nuORF REV__ENST00000473905.6_1_1:155026903-155028315:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1477355957031 3 375.14669 1122.41824 1.031 0.00038678 1.4902 0.00055904 2.5212 0.00094582 375.14699557780045 46.796 0.39499 41.715 41.56 41.955 -5.0805 138 67 3 0 0 0 0.71036 2 28870 28870;29001 1.3296 0 1 98743000 + 68827 27516 45790 46813 80409;80410 80409 -0.13807161115869349 VGCFAQMYFI 10 Unmodified _VGCFAQMYFI_ 0 0 0 ENSG00000170683|ENST00000642047|OR10A3 ENSG00000170683|ENST00000642047|OR10A3 ENSG00000170683|ENST00000642047|OR10A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5174255371094 3 393.517284 1177.53002 0.48109 0.00018932 0.3323 0.00013076 0.81339 0.00032008 393.5173558057309 47.553 0.21526 47.514 47.385 47.6 -0.038643 18 9 3 0 0 0 0.65502 1 25640 25640 4.1895 1.1943 1 2324000 68828 8014 45791 46814 80411 80411 -0.05164075020775272 VGCFLLLFL 9 Unmodified _VGCFLLLFL_ 0 0 0 ENST00000266673.9_1_12:72080587-72083430:+|nuORF ENST00000266673.9_1_12:72080587-72083430:+|nuORF ENST00000266673.9_1_12:72080587-72083430:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7991943359375 2 512.798632 1023.58271 0.036081 1.8502E-05 0.56553 0.00029 0.60161 0.00030851 512.7989569340376 36.959 0.21171 36.98 36.858 37.07 0.021545 13 9 2 0 0 0 0.3554 1 19617 19617 14.582 0 1 1027300 68829 11345 45792 46815 80412 80412 0.0718625110434914 VGCGGQAR 8 Unmodified _VGCGGQAR_ 0 0 0 ENST00000557552.1_1_14:105242946-105243117:-|nuORF ENST00000557552.1_1_14:105242946-105243117:-|nuORF ENST00000557552.1_1_14:105242946-105243117:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1802062988281 2 374.181955 746.349357 NaN NaN NaN NaN NaN NaN NaN 21.492 1 21.505 21.005 22.005 0.013796 0 0 0 0.97444 1 11009 11009 2.5775 0 1 68830 15260 45793 46816 80413 80413 -0.03396412562608475 VGCGLGPGR 9 Unmodified _VGCGLGPGR_ 0 0 0 ENST00000337304.2_1_22:39916812-39916938:+|nuORF ENST00000337304.2_1_22:39916812-39916938:+|nuORF ENST00000337304.2_1_22:39916812-39916938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2127075195312 2 408.213255 814.411957 0.0069542 2.8388E-06 -1.8125 -0.00073989 -1.8056 -0.00073706 408.21254733733315 50.989 0.30342 50.935 50.803 51.107 -0.053871 19 14 2 0 0 0 0.58865 1 27601 27601 2.0598 1.2661 1 3617900 68831 11925 45794 46817 80414 80414 -0.002672664944157077 VGCGLGPGR 9 Unmodified _VGCGLGPGR_ 0 0 0 ENST00000337304.2_1_22:39916812-39916938:+|nuORF ENST00000337304.2_1_22:39916812-39916938:+|nuORF ENST00000337304.2_1_22:39916812-39916938:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 408.213255 814.411957 0.62176 0.00025381 -1.6148 -0.00065919 -0.99307 -0.00040538 408.2125090511813 51.268 0.24259 51.268 51.15 51.393 0 0.16623 0.00010301 NaN 2.0598 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1155300 68832 11925 45794 46817 -0.002672664944157077 VGCGMHSL 8 Unmodified _VGCGMHSL_ 0 0 0 ENST00000549857.1_1_17:6918973-6919195:+|nuORF ENST00000549857.1_1_17:6918973-6919195:+|nuORF ENST00000549857.1_1_17:6918973-6919195:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1797180175781 2 402.180566 802.346579 NaN NaN NaN NaN NaN NaN NaN 57.185 1 57.185 56.685 57.685 0 0 0 0 0.97444 1 31819 31819 2.8892 2.0956 1 68833 15154 45795 46818 80415 80415 -0.06250004011769761 VGCHKLIN 8 Unmodified _VGCHKLIN_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2447509765625 2 442.244555 882.474557 0.57336 0.00025357 -0.56712 -0.00025081 0.0062429 2.7609E-06 442.2443364248923 27.583 0.31843 24.546 24.416 24.734 -3.0365 24 15 2 0 0 0 0.79669 1 15303 15303 8.5933 0.68312 1 17357000 68834 6514 45796 46819 80416 80416 0.028618795737770597 VGCHPHAYPHI 11 Unmodified _VGCHPHAYPHI_ 0 0 0 ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF ENST00000487162.1_1_22:50967153-50967951:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.8650817871094 3 410.866075 1229.5764 -0.54315 -0.00022316 -1.9198 -0.00078879 -2.463 -0.001012 411.1990732641483 18.94 0.081768 18.963 18.926 19.008 0.023106 7 4 2 0 0 0 0.74157 1 9539 9539 0.094841 0 1 348590 68835 14197 45797 46820 80417 80417 -0.02920874074470703 VGCLANRA 8 Unmodified _VGCLANRA_ 0 0 0 REV__ENST00000334815.4_1_1:45792596-45792884:+|nuORF REV__ENST00000334815.4_1_1:45792596-45792884:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2122192382812 2 402.213255 802.411957 NaN NaN NaN NaN NaN NaN NaN 18.383 1 15.761 15.261 16.261 -2.6215 0 0 0 0.97444 1 9678 9678 2.5775 0 1 + 68836 25630 45798 46821 80418 80418 0.002847335055776057 VGCLAYFF 8 Unmodified _VGCLAYFF_ 0 0 0 nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1 nc|ENSG00000058799|Q9Y548-2|YIPF1 nc|ENSG00000058799|Q9Y548-2|YIPF1 MSMS AL20221201_MKP_PDAC_01 4 460.221435546875 2 460.222757 918.430961 NaN NaN NaN NaN NaN NaN NaN 79.464 1 73.288 72.788 73.788 -6.1757 0 0 0 0.94749 1 52074 52074 11.114 0.93107 1 68837 808 45799 46822 80419 80419 -0.03151729923365565 VGCLIFILF 9 Unmodified _VGCLIFILF_ 0 0 0 ENST00000298125.6_1_13:52334171-52334492:+|nuORF ENST00000298125.6_1_13:52334171-52334492:+|nuORF ENST00000298125.6_1_13:52334171-52334492:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2714233398438 2 512.798632 1023.58271 -0.096761 -4.9619E-05 -1.4767 -0.00075723 -1.5734 -0.00080685 512.7975318092845 37.894 0.31709 37.622 37.525 37.842 -0.27133 23 15 2 0 0 0 0.203 1 20009 20009 9.3474 4.1168 1 2081300 68838 11530 45800 46823 80420 80420 0.07186251104337771 VGCLLRLEP 9 Unmodified _VGCLLRLEP_ 0 0 0 ENSG00000196961|ENST00000354293|AP2A1;nc|ENSG00000196961|O95782|AP2A1;ENST00000601356.1_1_19:50309378-50309765:+|nuORF ENSG00000196961|ENST00000354293|AP2A1 ENSG00000196961|ENST00000354293|AP2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2864379882812 2 500.28642 998.558287 NaN NaN NaN NaN NaN NaN NaN 53.068 1 53.068 52.568 53.568 0 0 0 0 0.84369 1 29394 29394 2.3027 0 1 68839 9890 45801 46824 80421 80421 0.05894990950810097 VGCNSCGRWIF 11 Unmodified _VGCNSCGRWIF_ 0 0 0 ENST00000456179.1_1_X:154261825-154282944:+|nuORF ENST00000456179.1_1_X:154261825-154282944:+|nuORF ENST00000456179.1_1_X:154261825-154282944:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2799072265625 2 621.281343 1240.54813 0.473 0.00029386 0.065305 4.0573E-05 0.5383 0.00033444 621.2808774370408 64.786 0.19412 64.3 64.209 64.403 -0.48512 14 8 3 0 0 0 0.71618 1 35370 35370 2.7352 0.43246 1 1207500 68840 13595 45802 46825 80422 80422 -0.06251940046081472 VGCPIACP 8 Unmodified _VGCPIACP_ 0 0 0 nc|ENSG00000221819|O95177|GAS8-AS1 nc|ENSG00000221819|O95177|GAS8-AS1 nc|ENSG00000221819|O95177|GAS8-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1798706054688 2 380.180035 758.345517 NaN NaN NaN NaN NaN NaN NaN 16.876 1 16.876 16.376 17.376 0 0 0 0 0.97444 1 8271 8271 0.79363 0 1 68841 16549 45803 46826 80423 80423 -0.04332218380682207 VGCPIDLVY 9 Carbamidomethyl (C) _VGC(Carbamidomethyl (C))PIDLVY_ VGC(1)PIDLVY VGC(40)PIDLVY 0 1 0 nc|ENSG00000141994|Q96G46-3|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-2|DUS3L nc|ENSG00000141994|Q96G46-3|DUS3L nc|ENSG00000141994|Q96G46-3|DUS3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2631225585938 2 518.26261 1034.51067 1.3935 0.00072219 -0.81302 -0.00042136 0.58047 0.00030083 518.2621681620358 79.596 0.40035 73.421 73.186 73.586 -6.1757 40 23 2 0 0 0 0.068777 1 52157 52157 40.449 16.428 1 18775000 68842 5386 45804 46827 80424 80424 551 -0.00520708040039608 VGCPKGAR 8 Unmodified _VGCPKGAR_ 0 0 0 ENSG00000182957|ENST00000382108|SPATA13;nc|ENSG00000228741|Q96N96|SPATA13 ENSG00000182957|ENST00000382108|SPATA13 ENSG00000182957|ENST00000382108|SPATA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.21484375 2 394.215798 786.417042 NaN NaN NaN NaN NaN NaN NaN 42.235 1 42.227 41.727 42.727 -0.0088196 0 0 0 0.97444 1 22608 22608 2.8892 0 1 68843 9104 45805 46828 80425 80425 0.015290373681978053 VGCPRKRRHC 10 Unmodified _VGCPRKRRHC_ 0 0 0 ENST00000424203.5_1_21:34911493-34911649:-|nuORF;ENST00000426819.5_1_21:34911496-34915075:-|nuORF ENST00000424203.5_1_21:34911493-34911649:-|nuORF ENST00000424203.5_1_21:34911493-34911649:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.2041015625 3 404.550204 1210.62878 NaN NaN NaN NaN NaN NaN NaN 17.561 1 17.575 17.075 18.075 0.013865 0 0 0 0.99091 1 8741 8741 0.69767 0.24315 1 68844 13143 45806 46829 80426 80426 0.031893857875047615 VGCQEVCV 8 Unmodified _VGCQEVCV_ 0 0 0 ENST00000475415.5_1_7:2414943-2418434:+|nuORF ENST00000475415.5_1_7:2414943-2418434:+|nuORF ENST00000475415.5_1_7:2414943-2418434:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.6859130859375 2 418.685681 835.35681 1.791 0.00074986 -0.49115 -0.00020564 1.2998 0.00054422 418.68536964945633 47.769 0.36316 42.535 42.348 42.711 -5.2339 35 21 2 0 0 0 0.6895 1 29647 29647 18.135 1.1927 1 11458000 68845 13961 45807 46830 80427 80427 -0.0674544107720294 VGCRCSKDF 9 Unmodified _VGCRCSKDF_ 0 0 0 REV__ENSG00000212901|ENST00000391588|KRTAP3-1 REV__ENSG00000212901|ENST00000391588|KRTAP3-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7261047363281 2 507.728412 1013.44227 0.36232 0.00018396 -1.9563 -0.00099329 -1.594 -0.00080933 507.72715018846264 73.318 0.30183 72.842 72.717 73.018 -0.47588 19 13 2 0 0 0 0.58466 1 40095 40095 2.3027 0.24298 1 882140 + + 68846 16887 45808 46831 80428 80428 -0.06391275891542136 VGCRPQASVVF 11 Unmodified _VGCRPQASVVF_ 0 0 0 ENSG00000100253|ENST00000216075|MIOX ENSG00000100253|ENST00000216075|MIOX ENSG00000100253|ENST00000216075|MIOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2067565917969 3 388.206098 1161.59646 1.0703 0.00041549 -1.3307 -0.00051658 -0.2604 -0.00010109 388.2058415006512 18.402 0.33263 15.78 15.638 15.971 -2.6215 75 31 3 0 0 0 0.68427 1 9764 9764 2.6312 0 1 10169000 68847 1779 45809 46832 80429 80429 0.022128768654965825 VGCRRPRARAP 11 Unmodified _VGCRRPRARAP_ 0 0 0 ENST00000395863.7_1_20:55841273-55841597:-|nuORF ENST00000395863.7_1_20:55841273-55841597:-|nuORF ENST00000395863.7_1_20:55841273-55841597:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.5713500976562 3 413.571885 1237.69383 NaN NaN NaN NaN NaN NaN NaN 29.155 1 29.093 28.593 29.593 -0.062159 0 0 0 0.94165 1 15073 15073 1.3296 0.70282 1 68848 12777 45810 46833 80430 80430 0.08448703585008843 VGCRVWARPP 10 Unmodified _VGCRVWARPP_ 0 0 0 ENST00000491138.1_1_3:194930341-194930590:-|nuORF ENST00000491138.1_1_3:194930341-194930590:-|nuORF ENST00000491138.1_1_3:194930341-194930590:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5321044921875 3 380.874682 1139.60222 -0.62434 -0.0002378 0.84408 0.00032149 0.21974 8.3692E-05 380.87461180669374 15.124 0.041773 15.124 15.088 15.13 0 10 9 2 0 0 0 0.24007 1 7254 7254 0.15932 0 1 254270 68849 14277 45811 46834 80431 80431 0.038000201678187295 VGCSFPPL 8 Unmodified _VGCSFPPL_ 0 0 0 ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENST00000590387.1_1_18:21107838-21109292:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.207275390625 2 410.207107 818.399661 NaN NaN NaN NaN NaN NaN NaN 24.718 1 24.743 24.243 25.243 0.024429 0 0 0 0.97444 1 12763 12763 0.79363 0 1 68850 15683 45812 46835 80432 80432 -0.016803029574589345 VGCSSAEGAY 10 Unmodified _VGCSSAEGAY_ 0 0 0 ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1 ENSG00000047936|ENST00000368507|ROS1 ENSG00000047936|ENST00000368507|ROS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.1930236816406 2 472.194925 942.375297 NaN NaN NaN NaN NaN NaN NaN 27.328 1 27.328 26.828 27.828 0 0 0 0 0.91523 1 14076 14076 7.2892 0.56607 1 68851 695 45813 46836 80433 80433 -0.09819607901647487 VGCTKLGPTT 10 Unmodified _VGCTKLGPTT_ 0 0 0 REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF REV__ENST00000492112.2_1_1:24305263-24306804:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.7582092285156 2 488.760235 975.505917 NaN NaN NaN NaN NaN NaN NaN 16.727 1 16.727 16.227 17.227 0 0 0 0 0.99091 1 8182 8182 1.6526 0.85899 1 + 68852 27897 45814 46837 80434 80434 0.017184078172022055 VGCTRKNAM 9 Unmodified _VGCTRKNAM_ 0 0 0 ENST00000474183.1_1_3:47889381-47889438:+|nuORF ENST00000474183.1_1_3:47889381-47889438:+|nuORF ENST00000474183.1_1_3:47889381-47889438:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2435302734375 2 490.244229 978.473905 NaN NaN NaN NaN NaN NaN NaN 22.168 1 22.168 21.668 22.668 0 0 0 0 0.82396 1 11266 11266 4.756 1.8668 1 68853 13933 45815 46838 80435 80435 -0.016192831375860806 VGCVRNLK 8 Unmodified _VGCVRNLK_ 0 0 0 ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000124486|ENST00000378308|USP9X ENSG00000124486|ENST00000378308|USP9X MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2415161132812 2 444.75783 887.501106 0.82968 0.00036901 -1.4922 -0.00066365 -0.66248 -0.00029464 444.75716796771593 58.805 0.25797 58.744 58.643 58.901 -0.060722 20 12 2 0 0 0 8.7369 1 32095 32095 0.69038 0 1 1163800 68854 3790 45816 46839 80436 80436 0.05285568465103552 VGCVRWDFNQ 10 Unmodified _VGCVRWDFNQ_ 0 0 0 REV__ENSG00000059378|ENST00000263549|PARP12 REV__ENSG00000059378|ENST00000263549|PARP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5245971679688 3 408.525719 1222.55533 NaN NaN NaN NaN NaN NaN NaN 15.804 1 15.804 15.304 16.304 0 0 0 0 0.99091 1 7646 7646 0.69767 0 1 + 68855 17317 45817 46840 80437 80437 -0.04704884173975188 VGCWCRIKI 9 Unmodified _VGCWCRIKI_ 0 0 0 ENST00000553804.5_1_12:56078655-56078835:-|nuORF ENST00000553804.5_1_12:56078655-56078835:-|nuORF ENST00000553804.5_1_12:56078655-56078835:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7926025390625 2 539.28844 1076.56233 1.3133 0.00070825 -1.7427 -0.00093979 -0.42935 -0.00023154 539.287598520768 58.642 0.48066 52.567 52.387 52.868 -6.0745 48 26 2 0 0 0 0.18521 1 37482 37482 16.942 5.8278 1 124830000 68856 15196 45818 46841 80438 80438 0.027107571728947732 VGDAFHGL 8 Unmodified _VGDAFHGL_ 0 0 0 REV__ENSG00000143641|ENST00000366672|GALNT2 REV__ENSG00000143641|ENST00000366672|GALNT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2062683105469 2 408.205953 814.397353 NaN NaN NaN NaN NaN NaN NaN 18.321 1 18.327 17.827 18.827 0.0060463 0 0 0 0.97444 1 9281 9281 0.79363 0 1 + 68857 20658 45819 46842 80439 80439 -0.017270153708977887 VGDAITEPPYL 11 Unmodified _VGDAITEPPYL_ 0 0 0 REV__ENSG00000167720|ENST00000344595|SRR REV__ENSG00000167720|ENST00000344595|SRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5396118164062 3 392.204528 1173.59175 -0.044211 -1.734E-05 1.3822 0.00054209 1.338 0.00052475 392.2051666500127 17.698 0.48335 17.703 17.402 17.885 0.0050564 59 36 2 0 0 0 0.63851 1 8931 8931 7.4771 0 1 1347500 + 68858 22248 45820 46843 80440 80440 0.011902712037226593 VGDAPGTSN 9 Unmodified _VGDAPGTSN_ 0 0 0 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.1876220703125 2 409.187957 816.361361 NaN NaN NaN NaN NaN NaN NaN 18.032 1 18.032 17.532 18.532 0 0 0 0 0.84564 1 8935 8935 2.0598 0.40713 1 68859 7523 45821 46844 80441 80441 -0.05416517338414906 VGDAVHPQFK 10 Unmodified _VGDAVHPQFK_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;nc|ENSG00000063241|Q96AB3-3|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2905883789062 2 549.290548 1096.56654 -0.16589 -9.1123E-05 -0.27583 -0.00015151 -0.44172 -0.00024263 549.2904352311048 20.51 0.14233 20.51 20.446 20.589 0 24 15 2 0 0 0 0.63399 1 10353 10353 9.3831 0.63772 1 801570 68860 859 45822 46845 80442 80442 0.022122611917893664 VGDAVHPQFK 10 Unmodified _VGDAVHPQFK_ 0 0 0 ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2;nc|ENSG00000063241|Q96AB3-3|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 ENSG00000063241|ENST00000425675|ISOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.290771484375 2 549.290548 1096.56654 0.13317 7.3149E-05 0.096882 5.3216E-05 0.23005 0.00012637 549.2905662731808 20.389 0.23194 20.399 20.279 20.51 0.010553 29 13 3 0 0 0 0.44373 1 10371 10371 19.257 1.1106 1 3387000 68861 859 45822 46845 80443 80443 0.022122611917893664 VGDDENNE 8 Unmodified _VGDDENNE_ 0 0 0 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 446.1693725585938 2 446.169961 890.325369 0.39792 0.00017754 -0.69754 -0.00031122 -0.29962 -0.00013368 446.16950968328376 38.265 1.2439 38.282 37.46 38.703 0.01704 166 59 4 0 0 0 0.80624 1 20499 20499 2.8892 0.31174 1 83812000 + 68862 23024 45823 46846 80444 80444 -0.12418019305937378 VGDDENNE 8 Unmodified _VGDDENNE_ 0 0 0 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1705627441406 2 446.169961 890.325369 1.0396 0.00046385 -0.32385 -0.00014449 0.71577 0.00031935 446.1696110285256 48.515 0.97855 43.119 42.594 43.572 -5.3961 109 58 3 0 0 0 0.80975 1 30171 30171 0.79363 0 1 43647000 + 68863 23024 45823 46846 80445 80445 -0.12418019305937378 VGDDENNE 8 Unmodified _VGDDENNE_ 0 0 0 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 REV__nc|ENSG00000178150|Q8NC26-2|ZNF114 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.1695861816406 2 446.169961 890.325369 1.2715 0.00056732 -0.93575 -0.0004175 0.33579 0.00014982 446.1694031920151 60.733 0.62614 54.586 54.292 54.918 -6.1478 53 33 2 0 0 0 0.80975 1 38982 38982 0.79363 0.79363 1 43565000 + 68864 23024 45823 46846 80446 80446 -0.12418019305937378 VGDDLYSYGF 10 Unmodified _VGDDLYSYGF_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2501220703125 2 568.250754 1134.48696 0.41737 0.00023717 -2.3265 -0.001322 -1.9091 -0.0010849 568.2495166542566 75.278 0.21273 75.278 75.157 75.369 0 18 10 2 0 0 0 0.68719 1 41859 41859 4.3292 2.0265 1 567210 68865 9779;10169 45824 46847 80447 80447 -0.07490850272847638 VGDDYMERC 9 Unmodified _VGDDYMERC_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2136840820312 2 544.212792 1086.41103 0.62739 0.00034144 -0.18531 -0.00010085 0.44208 0.00024059 544.2128860270884 73.374 0.53688 73.374 73.126 73.663 0 116 27 6 0 0 0 0.58466 1 41004 41004 2.3027 0 1 15636000 + 68866 24019 45825 46848 80448 80448 -0.12871893716283012 VGDEEEDEGPA 11 Unmodified _VGDEEEDEGPA_ 0 0 0 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 REV__nc|ENSG00000112983|Q9H0E9-4|BRD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7243041992188 2 573.725298 1145.43604 0.40666 0.00023331 -1.3335 -0.00076509 -0.92689 -0.00053178 573.7243824857305 37.256 0.35085 37.256 37.018 37.369 0 47 17 3 0 0 0 0.63851 1 19824 19824 9.3831 0.63772 1 8393600 + 68867 18846 45826 46849 80449 80449 -0.1308584410835465 VGDEGAAF 8 Unmodified _VGDEGAAF_ 0 0 0 REV__ENST00000518711.1_1_8:48641465-48642165:+|nuORF REV__ENST00000518711.1_1_8:48641465-48642165:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.1748962402344 2 383.174318 764.334084 NaN NaN NaN NaN NaN NaN NaN 16.313 1 13.756 13.256 14.256 -2.557 0 0 0 0.97348 1 8443 8443 5.7604 3.1829 1 + 68868 28250 45827 46850 80450 80450 -0.057510008787971856 VGDELFVVM 9 Unmodified _VGDELFVVM_ 0 0 0 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 ENSG00000180370|ENST00000327134|PAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7483825683594 2 504.757161 1007.49977 0.77824 0.00039282 -0.84066 -0.00042433 -0.062418 -3.1506E-05 504.7566475051708 57.606 0.57682 57.606 57.177 57.754 0 50 27 3 0 0 0 0.41742 1 31886 31886 11.64 3.047 1 17786000 68869 8896 45828 46851 80451 80451 -0.003681104142970071 VGDEWAAA 8 Unmodified _VGDEWAAA_ 0 0 0 REV__ENST00000257600.3_1_12:113532694-113532959:+|nuORF REV__ENST00000257600.3_1_12:113532694-113532959:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.68701171875 2 409.687593 817.360633 NaN NaN NaN NaN NaN NaN NaN 15.734 1 15.734 15.234 16.234 0 0 0 0 0.97444 1 7607 7607 0.79363 0 1 + 68870 24929 45829 46852 80452 80452 -0.05535311987478053 VGDFDQALLF 10 Unmodified _VGDFDQALLF_ 0 0 0 REV__ENST00000302550.15_1_1:244869869-244869953:+|nuORF REV__ENST00000302550.15_1_1:244869869-244869953:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8606262207031 3 375.525602 1123.55498 0.020988 7.8816E-06 1.244 0.00046716 1.265 0.00047504 375.8604703909948 34.818 0.21397 34.846 34.733 34.947 0.027401 16 9 2 0 0 0 0.69377 1 18432 18432 3.5871 0.59182 1 3102000 + 68871 25339 45830 46853 80453 80453 -0.0018598062220007705 VGDFDQALLF 10 Unmodified _VGDFDQALLF_ 0 0 0 REV__ENST00000302550.15_1_1:244869869-244869953:+|nuORF REV__ENST00000302550.15_1_1:244869869-244869953:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 375.525602 1123.55498 0.020988 7.8816E-06 1.244 0.00046716 1.265 0.00047504 375.8604703909948 34.818 0.21397 34.846 34.733 34.947 0.027401 0 0 NaN 3.5871 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3102000 + 68872 25339 45830 46853 -0.0018598062220007705 VGDFRVRP 8 Unmodified _VGDFRVRP_ 0 0 0 REV__nc|ENSG00000112146|Q9UK97-3|FBXO9 REV__nc|ENSG00000112146|Q9UK97-3|FBXO9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 945.5264892578125 1 945.526476 944.519199 -0.31488 -0.00029773 0.4264 0.00040317 0.11152 0.00010544 945.525899996509 21.481 0.085482 21.51 21.483 21.568 0.028357 6 5 2 0 0 0 0.80624 1 10914 10914 2.8892 0 1 662280 + 68873 18789 45831 46854 80454 80454 0.04472026711471244 VGDGKLTDQVF 11 Unmodified _VGDGKLTDQVF_ 0 0 0 REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF REV__ENST00000462715.1_1_1:36602806-36603094:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5388793945312 3 393.539911 1177.5979 NaN NaN NaN NaN NaN NaN NaN 33.363 1 33.204 32.704 33.704 -0.15918 0 0 0 0.94165 1 17400 17400 1.3296 0.1363 1 + 68874 27341 45832 46855 80455 80455 0.016207894352191943 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7534790039062 2 479.753267 957.491981 0.42792 0.0002053 -0.35376 -0.00016972 0.074162 3.5579E-05 479.7529741487185 50.655 0.3252 50.655 50.456 50.782 0 36 15 3 0 0 0 0.0094915 1 27888 27888 81.864 43.713 1 29924000 68875 8599;4509 45833 46856 80456 80456 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7542724609375 2 479.753267 957.491981 0.28825 0.00013829 0.46443 0.00022281 0.75268 0.0003611 479.753487261003 51.146 0.27842 50.732 50.538 50.817 -0.41351 28 13 3 0 0 0 0.013472 1 27525 27525 70.716 47.567 1 1907500 68876 8599;4509 45833 46856 80457 80457 0.01153498380426754 VGDGYVVHL 9 Unmodified _VGDGYVVHL_ 0 0 0 ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3;ENST00000394613.3_1_11:63342419-63381578:-|nuORF ENSG00000133328|ENST00000255695|PLAAT2;ENSG00000176485|ENST00000415826|PLAAT3 ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.2545166015625 2 479.753267 957.491981 0.69169 0.00033184 -0.92431 -0.00044344 -0.23262 -0.0001116 479.75310473828506 56.902 0.3504 50.925 50.736 51.086 -5.9769 43 20 3 0 0 0 0.0088154 2 36438 36300;36438 106.85 68.694 1 35330000 68877 8599;4509 45833 46856 80458;80459 80459 0.01153498380426754 VGDIIEVV 8 Unmodified _VGDIIEVV_ 0 0 0 nc|ENSG00000147010|Q96B97-2|SH3KBP1;ENSG00000147010|ENST00000397821|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 nc|ENSG00000147010|Q96B97-2|SH3KBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2450256347656 2 422.244744 842.474934 -0.25278 -0.00010673 2.7961 0.0011807 2.5434 0.0010739 422.2457206802388 53.852 0.23277 53.785 53.688 53.921 -0.066936 16 11 2 0 0 0 0.80676 1 29257 29257 2.5775 0 1 2115600 68878 5812 45834 46857 80460 80460 0.04739577774626014 VGDIPYNDFH 10 Unmodified _VGDIPYNDFH_ 0 0 0 nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 nc|ENSG00000186191|P59827-2|BPIFB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8493041992188 3 392.848856 1175.52474 -0.80809 -0.00031746 1.1536 0.0004532 0.34553 0.00013574 393.1838065750009 28.204 0.21746 28.204 28.074 28.292 0 22 10 3 0 0 0 0.70951 1 14585 14585 0.77653 0 1 1009400 68879 9460 45835 46858 80461 80461 -0.056003392873890334 VGDKCGKW 8 Unmodified _VGDKCGKW_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-4|CDC20B REV__nc|ENSG00000164287|Q86Y33-4|CDC20B MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.7220458984375 2 446.720913 891.427273 1.6852 0.0007528 -0.42384 -0.00018934 1.2613 0.00056346 446.7208192196261 62.908 0.44577 56.733 56.503 56.949 -6.1757 37 22 2 0 0 0 0.75262 1 40557 40557 12.532 3.1841 1 12330000 + 68880 21896 45836 46859 80462 80462 -0.02278399697217992 VGDKQSWVY 9 Unmodified _VGDKQSWVY_ 0 0 0 REV__ENSG00000241685|ENST00000262942|ARPC1A REV__ENSG00000241685|ENST00000262942|ARPC1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2688598632812 2 541.269281 1080.52401 0.5065 0.00027415 -2.2985 -0.0012441 -1.792 -0.00096994 541.2688531202864 73.159 0.39759 72.684 72.451 72.849 -0.47588 26 17 2 0 0 0 0.53666 1 39968 39968 5.2307 0 1 1912200 + 68881 24453 45837 46860 80463 80463 -0.01303133936426093 VGDKQSWVY 9 Unmodified _VGDKQSWVY_ 0 0 0 REV__ENSG00000241685|ENST00000262942|ARPC1A REV__ENSG00000241685|ENST00000262942|ARPC1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.269281 1080.52401 0.5065 0.00027415 -2.2985 -0.0012441 -1.792 -0.00096994 541.2688531202864 73.159 0.39759 72.684 72.451 72.849 -0.47588 0 0 NaN 5.2307 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1912200 + 68882 24453 45837 46860 -0.01303133936426093 VGDLAVTYL 9 Unmodified _VGDLAVTYL_ 0 0 0 REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 950.5167846679688 1 950.519325 949.512048 0.47161 0.00044827 0.71458 0.00067922 1.1862 0.0011275 950.5196613042931 71.888 0.30035 71.412 71.293 71.594 -0.47609 23 11 3 0 0 0 0.5029 1 39424 39424 7.2892 2.5332 1 1122500 + 68883 24987 45838 46861 80464 80464 0.03527249320381998 VGDLKSASSYF 11 Unmodified _VGDLKSASSYF_ 0 0 0 REV__nc|ENSG00000180113|O60522-2|TDRD6 REV__nc|ENSG00000180113|O60522-2|TDRD6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8893737792969 3 391.864394 1172.57135 -0.10137 -3.9723E-05 1.0717 0.00041996 0.97033 0.00038024 391.86486058052185 37.969 0.18962 37.986 37.881 38.071 0.01704 12 8 2 0 0 0 0.30496 1 20150 20150 1.2148 0.021489 1 716090 + 68884 23140 45839 46862 80465 80465 -0.008028994560845604 VGDLMIRN 8 Unmodified _VGDLMIRN_ 0 0 0 ENSG00000134115|ENST00000446702|CNTN6 ENSG00000134115|ENST00000446702|CNTN6 ENSG00000134115|ENST00000446702|CNTN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2478942871094 2 459.247295 916.480036 1.6068 0.00073791 -0.71357 -0.00032771 0.8932 0.0004102 459.247092111471 50.218 0.304 50.169 50.006 50.31 -0.048824 18 14 2 0 0 0 0.80676 1 27156 27156 2.5775 0 1 968390 68885 4559 45840 46863 80466 80466 0.018455583655850205 VGDLVLVNGY 10 Unmodified _VGDLVLVNGY_ 0 0 0 REV__ENSG00000116649|ENST00000376957|SRM REV__ENSG00000116649|ENST00000376957|SRM MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.28857421875 2 524.787307 1047.56006 1.499 0.00078665 -0.50937 -0.00026731 0.98961 0.00051933 524.7869640614693 64.228 0.55077 58.052 57.765 58.315 -6.1757 54 26 3 0 0 0 0.64183 1 41528 41528 14.838 14.838 1 26350000 + 68886 19052 45841 46864 80467 80467 0.038183232404207956 VGDMFNYF 8 Unmodified _VGDMFNYF_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MSMS AL20221201_MKP_PDAC_01 4 496.7131958007812 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 11.993 1 9.5113 9.0113 10.011 -2.482 0 0 0 0.97444 1 6044 6044 0.79363 0 1 68887 7167 45842 46865 80468 80468 -0.0850952565397165 VGDMFNYF 8 Unmodified _VGDMFNYF_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MSMS AL20221201_MKP_PDAC_01 4 496.7135314941406 2 496.712753 991.410954 NaN NaN NaN NaN NaN NaN NaN 14.293 1 11.79 11.29 12.29 -2.5029 0 0 0 0.97444 1 7249 7249 0.79363 0 1 68888 7167 45842 46865 80469 80469 -0.0850952565397165 VGDMFNYFL 9 Unmodified _VGDMFNYFL_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1716613769531 3 369.172282 1104.49502 -0.54683 -0.00020187 -1.6711 -0.00061694 -2.218 -0.00081881 369.17178119374375 29.776 0.24853 29.776 29.682 29.931 0 29 14 3 0 0 0 0.61256 1 15441 15441 0.26902 0.1097 1 11327000 68889 7167 45843 46866 80470 80470 -0.05304994557059217 VGDMFNYFL 9 Unmodified _VGDMFNYFL_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.172282 1104.49502 -0.54683 -0.00020187 -1.6711 -0.00061694 -2.218 -0.00081881 369.17178119374375 29.776 0.24853 29.776 29.682 29.931 0 0.15373 -0.00040892 NaN 0.26902 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 11327000 68890 7167 45843 46866 -0.05304994557059217 VGDMFNYFL 9 Unmodified _VGDMFNYFL_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.172282 1104.49502 0.63875 0.00023581 -1.015 -0.00037471 -0.37626 -0.0001389 369.17190035862814 29.748 0.34287 29.667 29.525 29.868 -0.080431 0.045014 0.00031775 NaN 0.26902 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 18483000 68891 7167 45843 46866 -0.05304994557059217 VGDMFNYFL 9 Unmodified _VGDMFNYFL_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 369.172282 1104.49502 -0.035368 -1.3057E-05 -1.0348 -0.00038202 -1.0702 -0.00039507 369.50629711554564 29.566 0.16572 29.596 29.547 29.712 0.030104 -0.025837 0.00029584 NaN 0.26902 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3219100 68892 7167 45843 46866 -0.05304994557059217 VGDMFNYFL 9 Unmodified _VGDMFNYFL_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 369.172282 1104.49502 1.6233 0.00059929 -1.436 -0.00053013 0.18734 6.9162E-05 369.1718282472972 33.434 0.50121 29.449 29.264 29.765 -3.9853 -0.17291 -0.0001485 NaN 0.26902 70 28 3 NaN NaN NaN NaN 0 NaN NaN 0 43093000 68893 7167 45843 46866 -0.05304994557059217 VGDMRRES 8 Unmodified _VGDMRRES_ 0 0 0 REV__ENST00000592634.5_1_19:5895897-5896059:-|nuORF REV__ENST00000592634.5_1_19:5895897-5896059:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2289123535156 2 475.229633 948.444714 NaN NaN NaN NaN NaN NaN NaN 20.259 1 20.259 19.759 20.759 0 0 0 0 0.97444 1 10184 10184 2.5775 0.27475 1 + 68894 29180 45844 46867 80471 80471 -0.03157104162210089 VGDPLSPFRL 10 Unmodified _VGDPLSPFRL_ 0 0 0 REV__nc|ENSG00000204248|P13942-8|COL11A2 REV__nc|ENSG00000204248|P13942-8|COL11A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5416259765625 3 367.541475 1099.60259 0.28652 0.00010531 0.34349 0.00012625 0.63001 0.00023155 367.54151416498405 39.835 0.37558 39.84 39.607 39.982 0.0050583 41 17 3 0 0 0 0.69064 1 21278 21278 1.9064 0 1 3317200 + 68895 24149 45845 46868 80472 80472 0.05677718368656315 VGDQFSGRSF 10 Unmodified _VGDQFSGRSF_ 0 0 0 REV__ENST00000607797.5_1_5:92747008-92747182:-|nuORF REV__ENST00000607797.5_1_5:92747008-92747182:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1771850585938 3 367.177084 1098.50942 -0.59759 -0.00021942 -0.044201 -1.623E-05 -0.6418 -0.00023565 367.17704862727925 16.724 0.27753 16.724 16.542 16.819 0 174 72 3 0 0 0 0.70951 1 8085 8085 0.77653 0.32202 1 4112000 + 68896 29319 45846 46869 80473 80473 -0.035892060845753804 VGDQVDPVRPM 11 Unmodified _VGDQVDPVRPM_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1764526367188 3 404.872895 1211.59686 NaN NaN NaN NaN NaN NaN NaN 17.241 1 17.241 16.741 17.741 0 0 0 0 0.9428 1 8479 8479 0.50596 0.34663 1 + 68897 29813 45847 46870 80474 80474 -0.0004774820531565638 VGDQVLVA 8 Unmodified _VGDQVLVA_ 0 0 0 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.7306213378906 2 400.729261 799.443968 NaN NaN NaN NaN NaN NaN NaN 36.308 1 36.333 35.833 36.833 0.024967 0 0 0 0.97444 1 19233 19233 2.8892 0 1 68898 2296 45848 46871 80475 80475 0.03622424460388629 VGDQVLVA 8 Unmodified _VGDQVLVA_ 0 0 0 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 ENSG00000105270|ENST00000360535|CLIP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.7126770019531 2 400.729261 799.443968 -0.21127 -8.4662E-05 2.1943 0.00087931 1.983 0.00079464 400.7295519720566 37.793 0.29414 37.81 37.691 37.985 0.01704 16 13 2 0 0 0 8.7369 1 20160 20160 5.2307 2.9279 1 994130 68899 2296 45848 46871 80476 80476 0.03622424460388629 VGDQYLGHQ 9 Unmodified _VGDQYLGHQ_ 0 0 0 REV__ENST00000514047.1_1_5:24170479-24171004:+|nuORF REV__ENST00000514047.1_1_5:24170479-24171004:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7421264648438 2 508.743431 1015.47231 NaN NaN NaN NaN NaN NaN NaN 17.158 1 17.163 16.663 17.663 0.0050564 0 0 0 0.84564 1 8642 8642 2.0598 0 1 + 68900 28187 45849 46872 80477 80477 -0.03480877630317991 VGDRFMRLI 9 Unmodified _VGDRFMRLI_ 0 0 0 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 ENSG00000183760|ENST00000331256|ACP7 MSMS AL20221201_MKP_PDAC_01 4 553.8113403320312 2 553.810593 1105.60663 NaN NaN NaN NaN NaN NaN NaN 25.352 1 22.469 21.969 22.969 -2.8831 0 0 0 0.84369 1 13874 13874 2.3027 0 1 68901 9190 45850 46873 80478 80478 0.058054845907236086 VGDRHRRS 8 Unmodified _VGDRHRRS_ 0 0 0 REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A REV__nc|ENSG00000161642|Q96PM9-2|ZNF385A MSMS AL20221201_MKP_PDAC_01 4 491.767822265625 2 491.768106 981.521659 NaN NaN NaN NaN NaN NaN NaN 11.895 1 9.4129 8.9129 9.9129 -2.482 0 0 0 0.97444 1 5988 5988 0.79363 0 1 + 68902 21602 45851 46874 80479 80479 0.030158751691374164 VGDRLRGL 8 Unmodified _VGDRLRGL_ 0 0 0 REV__ENSG00000138080|ENST00000380320|EMILIN1 REV__ENSG00000138080|ENST00000380320|EMILIN1 MSMS AL20221201_MKP_PDAC_01 4 443.2682495117188 2 443.266876 884.519199 NaN NaN NaN NaN NaN NaN NaN 25.441 1 22.558 22.058 23.058 -2.8831 0 0 0 0.9706 1 13931 13931 6.3541 0 1 + 68903 20300 45852 46875 80480 80480 0.07232026711483286 VGDRLVTSDDF 11 Unmodified _VGDRLVTSDDF_ 0 0 0 ENST00000507963.5_1_5:92916493-92916754:-|nuORF ENST00000507963.5_1_5:92916493-92916754:-|nuORF ENST00000507963.5_1_5:92916493-92916754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.5349731445312 3 408.534937 1222.58298 -0.4251 -0.00017367 0.44524 0.00018189 0.020131 8.2241E-06 408.53533882512204 36.538 0.34084 36.288 36.086 36.427 -0.2497 63 15 6 0 0 0 0.71036 1 19247 19247 1.3296 0.1363 1 68680000 68904 14551 45853 46876 80481 80481 -0.019407024327620093 VGDRRTLL 8 Unmodified _VGDRRTLL_ 0 0 0 ENST00000452684.2_2_6:160113021-160113264:-|nuORF ENST00000452684.2_2_6:160113021-160113264:-|nuORF ENST00000452684.2_2_6:160113021-160113264:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2796936035156 2 465.279983 928.545414 0.17429 8.1094E-05 0.36576 0.00017018 0.54005 0.00025127 465.2800120749506 76.456 0.75534 76.504 76.299 77.054 0.047951 62 31 3 0 0 0 0.80624 1 42145 42145 2.8892 0 1 7993300 68905 13546 45854 46877 80482 80482 0.07828295882961811 VGDRSFVCFN 10 Unmodified _VGDRSFVCFN_ 0 0 0 REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF REV__ENST00000434570.6_1_22:20052429-20053083:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8471984863281 3 381.846569 1142.51788 NaN NaN NaN NaN NaN NaN NaN 15.059 1 15.059 14.559 15.559 0 0 0 0 0.99248 1 7221 7221 0.62683 0.35781 1 + 68906 27011 45855 46878 80483 80483 -0.047679754395858254 VGDRVMPRIR 10 Unmodified _VGDRVMPRIR_ 0 0 0 REV__ENSG00000185100|ENST00000330877|ADSS1 REV__ENSG00000185100|ENST00000330877|ADSS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2329406738281 3 400.232758 1197.67644 NaN NaN NaN NaN NaN NaN NaN 74.932 1 74.455 73.955 74.955 -0.47714 0 0 0 0.99091 1 41011 41011 0.69767 0.46182 1 + 68907 23471 45856 46879 80484 80484 0.08551363259334721 VGDRWTGP 8 Unmodified _VGDRWTGP_ 0 0 0 REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2225646972656 2 444.222134 886.429715 0.17747 7.8837E-05 1.0415 0.00046265 1.219 0.00054149 444.22262595610806 49.008 0.30405 49.008 48.89 49.194 0 23 14 2 0 0 0 0.80311 1 26932 26932 4.756 4.756 1 4698200 + 68908 28907 45857 46880 80485 80485 -0.018042279679093554 VGDRWTGP 8 Unmodified _VGDRWTGP_ 0 0 0 REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 444.222134 886.429715 0.17747 7.8837E-05 1.0415 0.00046265 1.219 0.00054149 444.22262595610806 49.008 0.30405 49.008 48.89 49.194 0 0.015332 -0.00050271 NaN 4.756 23 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4698200 + 68909 28907 45857 46880 -0.018042279679093554 VGDRWTGP 8 Unmodified _VGDRWTGP_ 0 0 0 REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF REV__ENST00000565192.1_1_6:31022106-31024293:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 444.222134 886.429715 0.56976 0.0002531 1.8522 0.0008228 2.422 0.0010759 444.2227976772609 48.996 0.40442 48.953 48.791 49.195 -0.04369 -0.04049 0.00021758 NaN 4.756 50 19 4 NaN NaN NaN NaN 0 NaN NaN 0 19379000 + 68910 28907 45857 46880 -0.018042279679093554 VGDSHLGE 8 Unmodified _VGDSHLGE_ 0 0 0 ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B ENSG00000066084|ENST00000301180|DIP2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1948547363281 2 407.1905 812.366446 NaN NaN NaN NaN NaN NaN NaN 36.003 1 36.003 35.503 36.503 0 0 0 0 0.95973 1 19071 19071 8.5933 0.68312 1 68911 927 45858 46881 80486 80486 -0.04724213475799388 VGDSNIDHLIF 11 Unmodified _VGDSNIDHLIF_ 0 0 0 REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF REV__ENST00000465524.5_1_19:49414488-49422475:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.5307006835938 3 410.543544 1228.6088 NaN NaN NaN NaN NaN NaN NaN 18.596 1 18.619 18.119 19.119 0.023106 0 0 0 0.94144 1 9334 9334 0.50596 0 1 + 68912 18373 45859 46882 80487 80487 0.003641918095354413 VGDTVDFKII 10 Unmodified _VGDTVDFKII_ 0 0 0 REV__ENSG00000183090|ENST00000329798|FREM3 REV__ENSG00000183090|ENST00000329798|FREM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.54150390625 3 369.541252 1105.60193 0.10848 4.0088E-05 1.0695 0.00039523 1.178 0.00043532 369.54165964804207 34.204 0.23014 34.233 34.057 34.287 0.028934 20 10 3 0 0 0 0.67033 1 17993 17993 3.3196 0 1 2161100 + 68913 23319 45860 46883 80488 80488 0.05334878928965736 VGDVIVIHLK 10 Unmodified _VGDVIVIHLK_ 0 0 0 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.89794921875 3 364.89737 1091.67028 0.042535 1.5521E-05 1.1043 0.00040296 1.1468 0.00041848 364.8979073718752 19.875 0.12443 19.883 19.822 19.946 0.0078487 8 6 2 0 0 0 0.71123 1 10133 10133 0.69767 0.07084 1 594480 68914 8965 45861 46884 80489 80489 0.12811168299458586 VGDVIVIHLK 10 Unmodified _VGDVIVIHLK_ 0 0 0 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 ENSG00000181333|ENST00000315765|HEPHL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 364.89737 1091.67028 1.2701 0.00046345 -0.70214 -0.00025621 0.56794 0.00020724 364.89706135120366 22.409 0.30794 19.63 19.445 19.753 -2.7784 -0.12616 -0.00055347 NaN 0.69767 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 2209100 68915 8965 45861 46884 0.12811168299458586 VGDVQLLR 8 Unmodified _VGDVQLLR_ 0 0 0 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2708129882812 2 450.269084 898.523616 NaN NaN NaN NaN NaN NaN NaN 16.237 1 16.242 15.742 16.742 0.0050564 0 0 0 0.97444 1 8132 8132 0.79363 0 1 + 68916 22472 45862 46885 80490 80490 0.07029491134392174 VGDYFFGKCF 10 Unmodified _VGDYFFGKCF_ 0 0 0 ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 ENSG00000164307|ENST00000443439|ERAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2661743164062 2 591.76806 1181.52157 -0.20831 -0.00012327 1.4583 0.00086299 1.25 0.00073971 591.7687889765658 78.471 0.10167 77.985 77.957 78.059 -0.48595 6 4 2 0 0 0 0.23862 1 43009 43009 3.9444 0.94915 1 562210 68917 7176 45863 46886 80491 80491 -0.0619330566573808 VGEAVIQL 8 Unmodified _VGEAVIQL_ 0 0 0 ENST00000605833.1_1_10:17258201-17271901:-|nuORF ENST00000605833.1_1_10:17258201-17271901:-|nuORF ENST00000605833.1_1_10:17258201-17271901:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.5342712402344 2 414.744911 827.475269 NaN NaN NaN NaN NaN NaN NaN 55.258 1 54.78 54.28 55.28 -0.47798 0 0 0 0.97444 1 29969 29969 0.79363 0 1 68918 15847 45864 46887 80492 80492 0.05462997494487354 VGEDCPQWMV 10 Unmodified _VGEDCPQWMV_ 0 0 0 nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000530514.5_1_17:45668242-45699283:+|nuORF;ENST00000534807.1_1_17:45673771-45679230:+|nuORF nc|ENSG00000141279|P55786-2|NPEPPS nc|ENSG00000141279|P55786-2|NPEPPS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.501220703125 3 388.500182 1162.47872 NaN NaN NaN NaN NaN NaN NaN 17.628 1 17.628 17.128 18.128 0 0 0 0 1.0019 1 8701 8701 0.15932 0 1 68919 5311 45865 46888 80493 80493 -0.09602443785479409 VGEDYTLVV 9 Unmodified _VGEDYTLVV_ 0 0 0 REV__ENST00000554912.1_1_14:100762042-100762387:-|nuORF REV__ENST00000554912.1_1_14:100762042-100762387:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.50927734375 1 994.509154 993.501877 0.074293 7.3885E-05 0.74942 0.0007453 0.82371 0.00081919 994.5098366412484 75.175 0.18591 75.175 75.111 75.297 0 19 12 2 0 0 0 0.41742 2 41834 41827;41834 11.64 0 1 316300 + 68920 28762 45866 46889 80494;80495 80495 0.004866415951596537 VGEEIPAP 8 Unmodified _VGEEIPAP_ 0 0 0 ENST00000463837.5_1_11:64108158-64108420:+|nuORF ENST00000463837.5_1_11:64108158-64108420:+|nuORF ENST00000463837.5_1_11:64108158-64108420:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2135925292969 2 406.213443 810.412334 NaN NaN NaN NaN NaN NaN NaN 25.044 1 25.044 24.544 25.544 0 0 0 0 0.97444 1 12825 12825 2.5775 0 1 68921 13703 45867 46890 80496 80496 -0.0004556829356943126 VGEETMADYL 10 Unmodified _VGEETMADYL_ 0 0 0 ENST00000492266.1_1_10:135215046-135216278:+|nuORF;ENST00000473735.1_1_10:135216152-135233666:+|nuORF;ENST00000460848.5_1_10:135215574-135233666:+|nuORF;ENSG00000148824|ENST00000317502|MTG1 ENST00000492266.1_1_10:135215046-135216278:+|nuORF ENST00000492266.1_1_10:135215046-135216278:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.501953125 3 376.502357 1126.48524 NaN NaN NaN NaN NaN NaN NaN 18.992 1 19.015 18.515 19.515 0.023106 0 0 0 1.0019 1 9557 9557 0.15932 0 1 68922 5964 45868 46891 80497 80497 -0.07294227353122551 VGEEYLLG 8 Unmodified _VGEEYLLG_ 0 0 0 REV__ENST00000533827.5_1_11:64876997-64879056:+|nuORF REV__ENST00000533827.5_1_11:64876997-64879056:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 879.4478149414062 1 879.445825 878.438549 0.11417 0.00010041 0.0038455 3.3819E-06 0.11802 0.00010379 879.4458999276577 90.583 0.35168 90.583 90.437 90.788 0 25 16 2 0 0 0 0.80992 1 50191 50191 0.69038 0 1 704300 + 68923 21014 45869 46892 80498 80498 -0.0055329912207753296 VGEFAETSGK 10 Unmodified _VGEFAETSGK_ 0 0 0 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 ENSG00000164199|ENST00000405460|ADGRV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7488403320312 2 512.750921 1023.48729 NaN NaN NaN NaN NaN NaN NaN 20.753 1 20.781 20.281 21.281 0.028357 0 0 0 0.99091 1 10512 10512 1.6526 0.32309 1 68924 7163 45870 46893 80499 80499 -0.023514305530056845 VGEFGFHF 8 Unmodified _VGEFGFHF_ 0 0 0 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 REV__nc|ENSG00000187164|A0MZ66-3|SHTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2223815917969 2 470.221603 938.428653 -0.078727 -3.7019E-05 1.0601 0.00049848 0.98138 0.00046146 470.2221136228048 69.803 0.36365 69.323 69.109 69.472 -0.47903 45 15 4 0 0 0 0.80143 1 38110 38110 5.7604 0.52976 1 2582000 + 68925 29857 45871 46894 80500 80500 -0.04302442336813783 VGEFSEEAQFR 11 Unmodified _VGEFSEEAQFR_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;ENST00000534922.5_1_12:133202008-133209092:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20221201_MKP_PDAC_01 4 433.537353515625 3 433.53857 1297.59388 NaN NaN NaN NaN NaN NaN NaN 17.569 1 14.982 14.482 15.482 -2.5866 0 0 0 0.94165 1 9199 9199 1.3296 0.87513 1 68926 8655 45872 46895 80501 80501 -0.04301300058477864 VGEGESPLF 9 Unmodified _VGEGESPLF_ 0 0 0 REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7301635742188 2 467.729458 933.444362 0.43726 0.00020452 -0.31982 -0.00014959 0.11744 5.493E-05 467.72931617512637 72.194 0.33033 72.194 72.032 72.362 0 23 14 2 0 0 0 0.2001 2 40163 40163;40261 23.148 3.1841 1 1428000 + 68927 24788 45873 46896 80502;80503 80502 -0.02502200610433647 VGEGESPLF 9 Unmodified _VGEGESPLF_ 0 0 0 REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.4521484375 1 934.451639 933.444362 0.57484 0.00053716 1.9016 0.001777 2.4764 0.0023141 934.4516636801521 72.675 0.20971 72.199 72.063 72.273 -0.47588 11 9 2 0 0 0 0.2001 1 39784 39784 23.148 9.6405 1 470590 + 68928 24788 45873 46896 80504 80504 -0.02502200610433647 VGEGESPLF 9 Unmodified _VGEGESPLF_ 0 0 0 REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF REV__ENST00000225941.5_1_17:47300115-47300355:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 934.451639 933.444362 0.57484 0.00053716 1.9016 0.001777 2.4764 0.0023141 934.4516636801521 72.675 0.20971 72.199 72.063 72.273 -0.47588 0.00082291 0.0017987 NaN 23.148 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 470590 + 68929 24788 45873 46896 -0.02502200610433647 VGEGWLRG 8 Unmodified _VGEGWLRG_ 0 0 0 REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF REV__ENST00000506530.5_1_4:1323389-1323932:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2328796386719 2 437.232502 872.450451 1.4544 0.00063593 0.7426 0.00032469 2.197 0.00096062 437.2325150624711 49.956 0.4248 49.907 49.723 50.148 -0.048828 41 20 3 0 0 0 0.80676 1 27119 27119 2.5775 0 1 3444000 + 68930 28090 45874 46897 80505 80505 0.009123624117705731 VGEHNNMH 8 Unmodified _VGEHNNMH_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2004089355469 2 469.200876 936.387199 -0.11871 -5.5699E-05 -1.7181 -0.00080614 -1.8368 -0.00086184 469.20088440246445 28.963 0.22166 28.963 28.861 29.082 0 20 10 3 0 0 0 0.80143 1 15011 15011 5.7604 1.0044 1 745970 + 68931 17402 45875 46898 80506 80506 -0.08353946367788012 VGEHRGYYF 9 Unmodified _VGEHRGYYF_ 0 0 0 REV__ENSG00000056277|ENST00000370978|ZNF280C REV__ENSG00000056277|ENST00000370978|ZNF280C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8477172851562 3 376.513807 1126.51959 -0.10096 -3.8012E-05 -0.064412 -2.4252E-05 -0.16537 -6.2265E-05 376.513726198047 35.575 0.16877 35.6 35.494 35.663 0.024967 14 7 2 0 0 0 0.58466 1 18816 18816 1.1933 0 1 2837100 + 68932 17296 45876 46899 80507 80507 -0.03860598359347023 VGEICQDY 8 Unmodified _VGEICQDY_ 0 0 0 ENSG00000196353|ENST00000429747|CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4;ENSG00000178773|ENST00000319518|CPNE7;nc|ENSG00000178773|Q9UBL6|CPNE7 ENSG00000196353|ENST00000429747|CPNE4 ENSG00000196353|ENST00000429747|CPNE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.69921875 2 463.699843 925.385133 0.42991 0.00019935 -0.27818 -0.00012899 0.15174 7.036E-05 463.6996885774956 43.648 0.23737 43.648 43.486 43.723 0 15 11 2 0 0 0 0.80624 1 23763 23763 2.8892 0.31174 1 7550200 68933 9803 45877 46900 80508 80508 -0.08054419896268428 VGEIFSDDLI 10 Unmodified _VGEIFSDDLI_ 0 0 0 REV__nc|ENSG00000023041|Q9H6R6-2|ZDHHC6 REV__nc|ENSG00000023041|Q9H6R6-2|ZDHHC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8292236328125 2 554.282054 1106.54956 0.5986 0.00033179 -4.014 -0.0022249 -3.4154 -0.0018931 554.7794144489944 63.159 0.14712 62.672 62.603 62.75 -0.48617 13 6 4 0 0 0 0.21571 1 34415 34415 25.399 9.5521 1 562040 + 68934 17114 45878 46901 80509 80509 0.0005429579534848017 VGEIREKGF 9 Unmodified _VGEIREKGF_ 0 0 0 REV__ENSG00000173610|ENST00000286604|UGT2A1 REV__ENSG00000173610|ENST00000286604|UGT2A1 MSMS AL20221201_MKP_PDAC_01 4 517.783447265625 2 517.785099 1033.55564 NaN NaN NaN NaN NaN NaN NaN 97.626 1 91.451 90.951 91.951 -6.1757 0 0 0 0.7243 1 64694 64694 8.5933 0 1 + 68935 22740 45879 46902 80510 80510 0.04020858817534645 VGEISWQL 8 Unmodified _VGEISWQL_ 0 0 0 ENST00000589874.2_1_19:1432091-1433000:+|nuORF ENST00000589874.2_1_19:1432091-1433000:+|nuORF ENST00000589874.2_1_19:1432091-1433000:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.2467651367188 2 466.247818 930.481082 NaN NaN NaN NaN NaN NaN NaN 61.234 1 60.745 60.245 61.245 -0.48932 0 0 0 0.97348 1 33351 33351 5.7604 0.52976 1 68936 15679 45880 46903 80511 80511 0.013060960061352489 VGEKEIQSKF 10 Unmodified _VGEKEIQSKF_ 0 0 0 REV__nc|ENSG00000178999|Q96GD4-4|AURKB REV__nc|ENSG00000178999|Q96GD4-4|AURKB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8803100585938 3 388.880156 1163.61864 NaN NaN NaN NaN NaN NaN NaN 28.824 1 28.824 28.324 29.324 0 0 0 0 0.98914 1 14908 14908 0.77653 0 1 + 68937 23078 45881 46904 80512 80512 0.04337379814887754 VGEKIAFKLLE 11 Unmodified _VGEKIAFKLLE_ 0 0 0 ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL ENSG00000121058|ENST00000240316|COIL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2279968261719 3 416.251701 1245.73327 0.018715 7.7901E-06 -0.32954 -0.00013717 -0.31083 -0.00012938 416.2515130409532 34.297 0.31448 34.324 34.101 34.416 0.027405 20 14 2 0 0 0 0.30584 1 18007 18007 1.3296 0.36737 1 2017800 68938 3563 45882 46905 80513 80513 0.12023689296825069 VGEKRCQSV 9 Unmodified _VGEKRCQSV_ 0 0 0 REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2601623535156 2 503.260933 1004.50731 -0.66865 -0.00033651 -0.1239 -6.2353E-05 -0.79255 -0.00039886 503.25929213036903 32.774 0.51639 32.774 32.472 32.988 0 54 27 3 0 0 0 0.55775 1 17056 17056 3.9444 0.94915 1 4590400 + 68939 26547 45883 46906 80514 80514 0.0052404190596462286 VGELDLKVM 9 Unmodified _VGELDLKVM_ 0 0 0 REV__ENSG00000187664|ENST00000291481|HAPLN4 REV__ENSG00000187664|ENST00000291481|HAPLN4 MSMS AL20221201_MKP_PDAC_01 4 502.2794189453125 2 502.27826 1002.54197 NaN NaN NaN NaN NaN NaN NaN 76.224 1 70.048 69.548 70.548 -6.1757 0 0 0 0.23581 1 49862 49862 28.487 3.0875 1 + 68940 23648 45884 46907 80515 80515 0.0407986499405979 VGELELVG 8 Unmodified _VGELELVG_ 0 0 0 REV__nc|ENSG00000188157|O00468-2|AGRN REV__nc|ENSG00000188157|O00468-2|AGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2302551269531 2 408.229094 814.443634 -0.29832 -0.00012178 3.7696 0.0015389 3.4713 0.0014171 408.2305517813031 51.609 0.2546 51.55 51.416 51.67 -0.058918 18 12 2 0 0 0 0.80676 1 27961 27961 2.5775 0 1 1281900 + 68941 23692 45885 46908 80516 80516 0.028990047405386576 VGELLEPL 8 Unmodified _VGELLEPL_ 0 0 0 REV__ENSG00000143669|ENST00000389793|LYST REV__ENSG00000143669|ENST00000389793|LYST MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2522583007812 2 435.252569 868.490584 1.0628 0.00046258 -1.2294 -0.0005351 -0.16662 -7.2524E-05 435.2522983975869 91.554 0.39832 85.379 85.111 85.509 -6.1757 39 21 2 0 0 0 0.80143 1 60454 60454 5.7604 0 1 12294000 + 68942 20661 45886 46909 80517 80517 0.05107864291653641 VGELLVQQINL 11 Unmodified _VGELLVQQINL_ 0 0 0 REV__ENSG00000179532|ENST00000254579|DNHD1 REV__ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2422485351562 3 409.243206 1224.70779 -0.15088 -6.1746E-05 -2.157 -0.00088275 -2.3079 -0.00094449 409.242423353221 18.51 0.12978 18.516 18.45 18.58 0.0060482 10 6 2 0 0 0 0.70147 1 9380 9380 4.1166 1.0444 1 1302500 + 68943 23101 45887 46910 80518 80518 0.10442214774434433 VGELRILSL 9 Unmodified _VGELRILSL_ 0 0 0 REV__ENSG00000128253|ENST00000652607|RFPL2 REV__ENSG00000128253|ENST00000652607|RFPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3137512207031 2 500.313492 998.612431 0.26193 0.00013105 -0.15155 -7.5822E-05 0.11038 5.5226E-05 500.3134647396012 75.032 0.32478 75.078 74.899 75.224 0.045959 37 15 3 0 0 0 0.094149 1 41441 41441 34.402 1.616 1 20260000 + 68944 19604 45888 46911 80519 80519 0.1130690637405678 VGELRILSL 9 Unmodified _VGELRILSL_ 0 0 0 REV__ENSG00000128253|ENST00000652607|RFPL2 REV__ENSG00000128253|ENST00000652607|RFPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3131103515625 2 500.313492 998.612431 1.4436 0.00072227 -0.3015 -0.00015085 1.1421 0.00057142 500.31320257214315 95.914 0.32565 89.738 89.552 89.877 -6.1757 47 19 3 0 0 0 0.06294 1 63595 63595 41.84 0 1 74892000 + 68945 19604 45888 46911 80520 80520 0.1130690637405678 VGEMTPQY 8 Unmodified _VGEMTPQY_ 0 0 0 REV__ENSG00000196924|ENST00000369850|FLNA REV__ENSG00000196924|ENST00000369850|FLNA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7105407714844 2 462.710211 923.405868 NaN NaN NaN NaN NaN NaN NaN 75.202 1 75.248 74.748 75.748 0.045959 0 0 0 0.97444 1 41468 41468 2.5775 0 1 + 68946 23882 45889 46912 80521 80521 -0.0588982951660455 VGENVGQLNAI 11 Unmodified _VGENVGQLNAI_ 0 0 0 REV__ENSG00000156011|ENST00000327040|PSD3 REV__ENSG00000156011|ENST00000327040|PSD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2354736328125 2 557.29857 1112.58259 0.42527 0.000237 1.0172 0.00056688 1.4425 0.00080388 557.2990859792684 37.959 0.18264 37.959 37.846 38.028 0 15 8 2 0 0 0 0.67922 1 20199 20199 6.2058 0.47393 1 1854500 + 68947 21305 45890 46913 80522 80522 0.030799226380622713 VGEPFEYKF 9 Unmodified _VGEPFEYKF_ 0 0 0 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.274169921875 2 558.274032 1114.53351 0.43299 0.00024172 -0.5469 -0.00030532 -0.11391 -6.3593E-05 558.2734409547603 63.328 0.42033 63.328 63.146 63.567 0 47 21 3 0 0 0 0.41742 1 35376 35376 11.64 0 1 6812600 + 68948 21006 45891 46914 80523 80523 -0.019173656509110515 VGEPFEYKF 9 Unmodified _VGEPFEYKF_ 0 0 0 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 REV__nc|ENSG00000149577|Q8NBJ9-2|SIDT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2732543945312 2 558.274032 1114.53351 0.68341 0.00038153 -0.52845 -0.00029502 0.15496 8.6511E-05 558.2733046276629 63.871 0.41922 63.385 63.193 63.613 -0.48512 56 22 3 0 0 0 0.30562 1 34888 34888 16.942 2.104 1 12231000 + 68949 21006 45891 46914 80524 80524 -0.019173656509110515 VGEPGELPCVL 11 Unmodified _VGEPGELPCVL_ 0 0 0 REV__ENSG00000144589|ENST00000456909|STK11IP REV__ENSG00000144589|ENST00000456909|STK11IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7938232421875 2 556.78645 1111.55835 0.33724 0.00018777 -2.3298 -0.0012972 -1.9926 -0.0011095 556.7848586914871 52.454 0.7346 52.454 52.016 52.75 0 76 32 4 0 0 0 0.44389 1 28828 28828 19.257 1.1106 1 26962000 + 68950 20718 45892 46915 80525 80525 0.007029461601632647 VGEPYEMPE 9 Unmodified _VGEPYEMPE_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.7976684570312 2 525.726058 1049.43756 0.55012 0.00028921 1.8908 0.00099407 2.441 0.0012833 525.7270729715631 99.056 0.13298 92.881 92.841 92.974 -6.1757 11 7 2 0 0 0 0.17275 1 65895 65895 21.747 4.8044 1 11192000 68951 6400 45893 46916 80526 80526 -0.08517881553302686 VGEQQGHF 8 Unmodified _VGEQQGHF_ 0 0 0 REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF REV__ENST00000400376.2_1_7:2685390-2685471:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.7138671875 2 451.211766 900.40898 -0.46284 -0.00020884 -2.255 -0.0010175 -2.7178 -0.0012263 451.20837478525044 32.073 0.16342 32.073 31.983 32.146 0 19 7 3 0 0 0 0.80044 1 16753 16753 6.3541 0.59368 1 854550 + 68952 26596 45894 46917 80527 80527 -0.045208183475665464 VGEQRCAI 8 Unmodified _VGEQRCAI_ 0 0 0 REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2236633300781 2 438.22382 874.433086 NaN NaN NaN NaN NaN NaN NaN 18.278 1 18.278 17.778 18.778 0 0 0 0 0.90769 1 9073 9073 18.135 0 1 + 68953 20285 45895 46918 80528 80528 -0.009153011855573823 VGEQRCAIYL 10 Unmodified _VGEQRCAIYL_ 0 0 0 REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF REV__ENST00000494819.5_1_1:89324456-89357188:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.533935546875 3 384.534103 1150.58048 NaN NaN NaN NaN NaN NaN NaN 17.868 1 17.868 17.368 18.368 0 0 0 0 0.98914 1 8841 8841 0.77653 0 1 + 68954 20285 45896 46919 80529 80529 0.011211706285848777 VGEQRCNLM 9 Unmodified _VGEQRCNLM_ 0 0 0 chr11:1835616-1835886|153|16.25|0.66|4.63|+|1|SYT8,SYT8|1 chr11:1835616-1835886|153|16.25|0.66|4.63|+|1|SYT8,SYT8|1 chr11:1835616-1835886|153|16.25|0.66|4.63|+|1|SYT8,SYT8|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7415161132812 2 525.246969 1048.47938 -0.15879 -8.3403E-05 -0.96745 -0.00050815 -1.1262 -0.00059155 525.2467680434765 29.798 0.60165 29.798 29.662 30.263 0 103 31 4 0 0 0 0.49272 1 15685 15685 7.9102 0 1 154610000 68955 68 45897 46920 80530 80530 -0.04291604345780797 VGEQVKILQL 10 Unmodified _VGEQVKILQL_ 0 0 0 REV__nc|ENSG00000130810|Q9NQ55-2|PPAN REV__nc|ENSG00000130810|Q9NQ55-2|PPAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8455810546875 2 563.845156 1125.67576 0.37163 0.00020954 -0.31341 -0.00017671 0.058219 3.2826E-05 563.8449636718908 61.731 0.31284 61.244 61.074 61.387 -0.48764 40 14 4 0 0 0 0.048562 1 33588 33588 67.838 8.4698 1 9439400 + 68956 19745 45898 46921 80531 80531 0.11794847091277916 VGERALSSY 9 Unmodified _VGERALSSY_ 0 0 0 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 nc|ENSG00000204969|Q9Y5H9-2|PCDHA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.251953125 2 491.253631 980.49271 NaN NaN NaN NaN NaN NaN NaN 27.258 1 27.258 26.758 27.758 0 0 0 0 0.32177 1 14038 14038 24.021 3.5669 1 68957 16509 45899 46922 80532 80532 0.001682930294578 VGERGSVL 8 Unmodified _VGERGSVL_ 0 0 0 ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.7321166992188 2 408.732335 815.450116 -0.38081 -0.00015565 0.54859 0.00022423 0.16778 6.8576E-05 408.7325597322282 23.473 0.30112 23.473 23.287 23.588 0 26 14 2 0 0 0 0.79783 2 11919 11919;12014 7.9102 0 1 1335700 68958 12727 45900 46923 80533;80534 80533 0.03500942691914588 VGERGSVL 8 Unmodified _VGERGSVL_ 0 0 0 ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.73193359375 2 408.732335 815.450116 0.36736 0.00015015 -0.27925 -0.00011414 0.088113 3.6015E-05 408.7322476726171 26.225 0.30839 23.274 23.15 23.459 -2.9511 28 17 2 0 0 0 0.40035 1 14388 14388 44.407 0 1 10908000 68959 12727 45900 46923 80535 80535 0.03500942691914588 VGERGSVL 8 Unmodified _VGERGSVL_ 0 0 0 ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF ENST00000394164.5_1_14:73603528-73603651:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 408.732335 815.450116 -0.38081 -0.00015565 0.54859 0.00022423 0.16778 6.8576E-05 408.7325597322282 23.473 0.30112 23.473 23.287 23.588 0 0.099594 0.00035413 NaN 44.407 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1335700 68960 12727 45900 46923 0.03500942691914588 VGERHSRLH 9 Unmodified _VGERHSRLH_ 0 0 0 REV__ENSG00000105732|ENST00000359044|ZNF574 REV__ENSG00000105732|ENST00000359044|ZNF574 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.79541015625 2 545.796863 1089.57917 NaN NaN NaN NaN NaN NaN NaN 16.48 1 16.48 15.98 16.98 0 0 0 0 0.84369 1 8039 8039 2.3027 0.24298 1 + 68961 18453 45901 46924 80536 80536 0.03796717374689251 VGERLFPRQE 10 Unmodified _VGERLFPRQE_ 0 0 0 ENST00000426997.5_2_2:61372262-61389994:+|nuORF ENST00000426997.5_2_2:61372262-61389994:+|nuORF ENST00000426997.5_2_2:61372262-61389994:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.890869140625 3 410.891166 1229.65167 NaN NaN NaN NaN NaN NaN NaN 16.248 1 16.253 15.753 16.753 0.0050564 0 0 0 1.0019 1 8138 8138 0.15932 0 1 68962 13186 45902 46925 80537 80537 0.04603006657612241 VGERLGRL 8 Unmodified _VGERLGRL_ 0 0 0 REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF REV__ENST00000483405.5_2_16:29911714-29911888:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2748718261719 2 450.274701 898.534849 0.68631 0.00030903 0.27361 0.0001232 0.95992 0.00043223 450.274726032029 92.757 0.66403 86.581 86.284 86.948 -6.1757 102 41 3 0 0 0 0.80975 1 61443 61443 0.79363 0 1 225280000 + 68963 27740 45903 46926 80538 80538 0.08152313228526964 VGERLLLR 8 Unmodified _VGERLLLR_ 0 0 0 REV__ENSG00000163121|ENST00000451794|NEURL3 REV__ENSG00000163121|ENST00000451794|NEURL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7679748535156 2 478.306001 954.597449 0.73903 0.00035348 0.30225 0.00014457 1.0413 0.00049805 478.30616667072206 18.305 0.24475 15.684 15.548 15.793 -2.6215 41 18 3 0 0 0 0.80975 1 9585 9585 0.79363 0 1 7987200 + 68964 21729 45904 46927 80539 80539 0.11833459296713045 VGESGDLLF 9 Unmodified _VGESGDLLF_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7372741699219 2 468.737283 935.460012 0.35328 0.0001656 0.08878 4.1615E-05 0.44206 0.00020721 468.73744473137367 65.469 0.35151 65.469 65.272 65.624 0 29 13 3 0 0 0 0.49272 1 36592 36592 7.9102 0 1 2291100 + 68965 21753 45905 46928 80540 80540 -0.010299140933625495 VGETPDYINFN 11 Unmodified _VGETPDYINFN_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.7921752929688 2 634.793318 1267.57208 0.13901 8.8241E-05 -0.00813 -5.1609E-06 0.13088 8.308E-05 634.7932222917055 53.781 0.39532 53.329 53.167 53.562 -0.45173 44 19 3 0 0 0 0.46131 2 29050 29050;29162 18.373 1.2602 1 12331000 68966 4421 45906 46929 80541;80542 80541 -0.05100104807047501 VGEVFASDRDL 11 Unmodified _VGEVFASDRDL_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2026672363281 3 403.203299 1206.58807 NaN NaN NaN NaN NaN NaN NaN 17.907 1 17.921 17.421 18.421 0.013865 0 0 0 0.93969 1 8939 8939 1.1098 0.14748 1 68967 9772 45907 46930 80543 80543 -0.006963985701304409 VGEVKMLEK 9 Unmodified _VGEVKMLEK_ 0 0 0 ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B;ENST00000470338.1_1_22:22316666-22317191:-|nuORF;ENST00000457179.5_1_22:22311488-22316996:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF ENST00000444502.5_1_22:22313806-22324763:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7908325195312 2 516.791535 1031.56852 NaN NaN NaN NaN NaN NaN NaN 89.322 1 88.821 88.321 89.321 -0.50171 0 0 0 0.6306 1 48838 48838 11.64 0 1 68968 1745 45908 46931 80544 80544 0.05399553885399655 VGEVMWLLAF 10 Unmodified _VGEVMWLLAF_ 0 0 0 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.8768615722656 3 388.875577 1163.6049 0.0091424 3.5553E-06 2.0116 0.00078227 2.0208 0.00078582 388.87627064214666 19.07 0.17515 19.077 18.971 19.146 0.0078487 13 8 2 0 0 0 0.70951 1 9722 9722 0.77653 0.27058 1 951270 + 68969 20350 45909 46932 80545 80545 0.02964430782094496 VGEVMWLLAF 10 Unmodified _VGEVMWLLAF_ 0 0 0 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.877685546875 3 388.875577 1163.6049 NaN NaN NaN NaN NaN NaN NaN 15.473 1 15.479 14.979 15.979 0.0057774 0 0 0 0.98914 1 7712 7712 0.77653 0.27058 1 + 68970 20350 45909 46932 80546 80546 0.02964430782094496 VGEVSCSHSF 10 Unmodified _VGEVSCSHSF_ 0 0 0 ENSG00000119906|ENST00000238961|SLF2;nc|ENSG00000119906|Q8IX21-2|SLF2 ENSG00000119906|ENST00000238961|SLF2 ENSG00000119906|ENST00000238961|SLF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2304077148438 2 526.229299 1050.44404 NaN NaN NaN NaN NaN NaN NaN 21.588 1 21.616 21.116 22.116 0.028357 0 0 0 0.92825 1 10961 10961 6.7232 0.96273 1 68971 3477 45910 46933 80547 80547 -0.07915943601915387 VGEYVEGFF 9 Unmodified _VGEYVEGFF_ 0 0 0 REV__ENST00000397497.8_2_8:27288866-27309154:+|nuORF REV__ENST00000397497.8_2_8:27288866-27309154:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7456665039062 2 523.745108 1045.47566 NaN NaN NaN NaN NaN NaN NaN 60.468 1 59.978 59.478 60.478 -0.48941 0 0 0 0.84369 1 32929 32929 2.3027 0 1 + 68972 19268 45911 46934 80548 80548 -0.04525627576322222 VGEYVMSL 8 Unmodified _VGEYVMSL_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MSMS AL20221201_MKP_PDAC_01 4 449.2235107421875 2 449.222954 896.431355 NaN NaN NaN NaN NaN NaN NaN 15.58 1 13.052 12.552 13.552 -2.5273 0 0 0 0.97444 1 8006 8006 2.5775 1.7838 1 + 68973 22811 45912 46935 80549 80549 -0.0210035499416108 VGFAETIVASL 11 Unmodified _VGFAETIVASL_ 0 0 0 REV__ENSG00000147606|ENST00000276609|SLC26A7 REV__ENSG00000147606|ENST00000276609|SLC26A7 MSMS AL20221201_MKP_PDAC_01 4 369.5416564941406 3 369.541252 1105.60193 NaN NaN NaN NaN NaN NaN NaN 22.867 1 20.088 19.588 20.588 -2.7784 0 0 0 0.67092 1 12331 12331 10.315 0 1 + 68974 20903 45913 46936 80550 80550 0.05334878928965736 VGFAMHVV 8 Unmodified _VGFAMHVV_ 0 0 0 REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2292785644531 2 430.228374 858.442194 NaN NaN NaN NaN NaN NaN NaN 22.284 1 19.55 19.05 20.05 -2.7348 0 0 0 0.97444 1 11979 11979 2.8892 0 1 + 68975 18718 45914 46937 80551 80551 0.007310921707812668 VGFCPTFKKF 10 Unmodified _VGFCPTFKKF_ 0 0 0 ENST00000511235.1_1_5:134303666-134331399:+|nuORF;ENSG00000152705|ENST00000282611|CATSPER3 ENST00000511235.1_1_5:134303666-134331399:+|nuORF ENST00000511235.1_1_5:134303666-134331399:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8747863769531 3 391.875689 1172.60524 NaN NaN NaN NaN NaN NaN NaN 32.655 1 32.685 32.185 33.185 0.029743 0 0 0 0.98914 1 17152 17152 0.77653 0.27058 1 68976 6209 45915 46938 80552 80552 0.025838505019237346 VGFDREASIRC 11 Unmodified _VGFDREASIRC_ 0 0 0 nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS nc|ENSG00000188158|Q6T4R5-4|NHS nc|ENSG00000188158|Q6T4R5-4|NHS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 417.8755798339844 3 418.208278 1251.60301 0.98378 0.00041143 2.2059 0.00092252 3.1897 0.0013339 418.2090296635973 43.425 0.39613 38.66 38.539 38.935 -4.7648 36 25 2 0 0 0 0.30139 1 26415 26415 4.7159 0 1 16412000 68977 9632 45916 46939 80553 80553 -0.012732299737990616 VGFFFFIVY 9 Unmodified _VGFFFFIVY_ 0 0 0 REV__ENSG00000127083|ENST00000375550|OMD REV__ENSG00000127083|ENST00000375550|OMD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.5379333496094 3 380.203911 1137.5899 -0.62335 -0.000237 0.51791 0.00019691 -0.10544 -4.0088E-05 380.2041125970367 16.195 0.13562 16.195 16.113 16.249 0 47 36 2 0 0 0 0.61256 1 7860 7860 0.26902 0 1 659600 + 68978 19571 45917 46940 80554 80554 0.026613069764152897 VGFFFKDEQK 10 Unmodified _VGFFFKDEQK_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.8209228515625 2 622.819138 1243.62372 0.5713 0.00035582 0.19171 0.0001194 0.76301 0.00047522 622.8192101462761 83.306 0.25781 83.369 83.234 83.491 0.063171 25 9 3 0 0 0 0.32072 1 46063 46063 26.268 0.24744 1 9830200 68979 4224 45918 46941 80555 80555 0.011656836775046031 VGFFFKDEQK 10 Unmodified _VGFFFKDEQK_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.819138 1243.62372 0.4725 0.00029428 0.63374 0.0003947 1.1062 0.00068899 622.8190623128264 83.901 0.26178 83.401 83.266 83.528 -0.49961 0.015939 0.00041812 NaN 26.268 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 674690 68980 4224 45918 46941 0.011656836775046031 VGFFFKDEQK 10 Unmodified _VGFFFKDEQK_ 0 0 0 ENST00000483991.5_1_9:138703157-138717996:-|nuORF;nc|ENSG00000130559|Q5T5Y3-2|CAMSAP1;ENSG00000130559|ENST00000389532|CAMSAP1;nc|ENSG00000130559|Q5T5Y3-3|CAMSAP1 ENST00000483991.5_1_9:138703157-138717996:-|nuORF ENST00000483991.5_1_9:138703157-138717996:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 622.819138 1243.62372 0.5713 0.00035582 0.19171 0.0001194 0.76301 0.00047522 622.8192101462761 83.306 0.25781 83.369 83.234 83.491 0.063171 -0.015939 -0.00013249 NaN 26.268 25 9 3 NaN NaN NaN NaN 0 NaN NaN 0 9830200 68981 4224 45918 46941 0.011656836775046031 VGFFFYRKK 9 Unmodified _VGFFFYRKK_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8928527832031 3 397.89396 1190.66005 -0.65052 -0.00025884 -0.51702 -0.00020572 -1.1675 -0.00046456 397.8938062006579 15.859 0.077812 15.859 15.808 15.886 0 22 17 2 0 0 0 0.61256 1 7671 7671 0.26902 0.033176 1 585790 + 68982 28032 45919 46942 80556 80556 0.07234605364874369 VGFFFYRKK 9 Unmodified _VGFFFYRKK_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.894775390625 3 397.89396 1190.66005 -0.52957 -0.00021071 0.89498 0.00035611 0.36542 0.0001454 397.8942385504757 16.372 0.040195 16.373 16.344 16.384 0.0010548 10 8 2 0 0 0 0.61256 1 8070 8070 0.26902 0.1097 1 284230 + 68983 28032 45919 46942 80557 80557 0.07234605364874369 VGFFFYRKK 9 Unmodified _VGFFFYRKK_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 397.89396 1190.66005 -0.52957 -0.00021071 0.89498 0.00035611 0.36542 0.0001454 397.8942385504757 16.372 0.040195 16.373 16.344 16.384 0.0010548 -0.18011 -0.0020341 NaN 0.26902 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 284230 + 68984 28032 45919 46942 0.07234605364874369 VGFFFYRKK 9 Unmodified _VGFFFYRKK_ 0 0 0 REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF REV__ENST00000502913.1_1_4:89394186-89425581:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 397.89396 1190.66005 -0.10805 -4.2991E-05 2.8884 0.0011493 2.7804 0.0011063 397.8953432294807 16.728 0.11214 16.733 16.659 16.772 0.0050564 0.18011 0.00034546 NaN 0.26902 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 575450 + 68985 28032 45919 46942 0.07234605364874369 VGFFHSLLPE 10 Unmodified _VGFFHSLLPE_ 0 0 0 nc|ENSG00000189308|Q6MZP7-5|LIN54 nc|ENSG00000189308|Q6MZP7-5|LIN54 nc|ENSG00000189308|Q6MZP7-5|LIN54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5379638671875 3 382.537842 1144.5917 NaN NaN NaN NaN NaN NaN NaN 23.63 1 23.63 23.13 24.13 0 0 0 0 0.99091 1 12050 12050 0.69767 0.07084 1 68986 16473 45920 46943 80558 80558 0.025183159943708233 VGFFQLFRF 9 Unmodified _VGFFQLFRF_ 0 0 0 ENSG00000073734|ENST00000650372|ABCB11 ENSG00000073734|ENST00000650372|ABCB11 ENSG00000073734|ENST00000650372|ABCB11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8178100585938 2 580.816202 1159.61785 NaN NaN NaN NaN NaN NaN NaN 17.591 1 17.596 17.096 18.096 0.0050564 0 0 0 0.85737 1 8880 8880 0.6015 0 1 68987 1112 45921 46944 80559 80559 0.0444262995652025 VGFFQLLKID 10 Unmodified _VGFFQLLKID_ 0 0 0 REV__nc|ENSG00000254685|O14772|FPGT REV__nc|ENSG00000254685|O14772|FPGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2322082519531 3 393.897258 1178.66995 0.31473 0.00012397 0.55105 0.00021706 0.86577 0.00034103 393.8974516505847 63.5 0.26379 63.014 62.885 63.149 -0.48617 25 11 3 0 0 0 0.63399 1 34642 34642 5.4027 0.68679 1 3100900 + 68988 24527 45922 46945 80560 80560 0.08775748579614628 VGFFQLLKID 10 Unmodified _VGFFQLLKID_ 0 0 0 REV__nc|ENSG00000254685|O14772|FPGT REV__nc|ENSG00000254685|O14772|FPGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2316284179688 3 393.897258 1178.66995 0.2153 8.4805E-05 -0.43689 -0.00017209 -0.22159 -8.7285E-05 393.8969981843698 54.873 0.4576 54.804 54.502 54.96 -0.068741 30 22 2 0 0 0 0.56348 1 29821 29821 7.9454 3.5392 1 1833600 + 68989 24527 45922 46945 80561 80561 0.08775748579614628 VGFFVQMQWSK 11 Unmodified _VGFFVQMQWSK_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.8695983886719 3 452.897152 1355.66963 NaN NaN NaN NaN NaN NaN NaN 14.077 1 14.046 13.546 14.546 -0.030868 0 0 0 0.94301 1 6827 6827 0.094841 0 1 68990 6254 45923 46946 80562 80562 0.00602005588098109 VGFGEEMVKEI 11 Unmodified _VGFGEEMVKEI_ 0 0 0 nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD nc|ENSG00000153707|P23468-2|PTPRD nc|ENSG00000153707|P23468-2|PTPRD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.306640625 2 619.310289 1236.60602 NaN NaN NaN NaN NaN NaN NaN 61.129 1 61.129 60.629 61.629 0 0 0 0 0.93613 1 34088 34088 5.2969 0.96765 1 68991 6271 45924 46947 80563 80563 -0.002813996396298535 VGFKGGFG 8 Unmodified _VGFKGGFG_ 0 0 0 REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.51416015625 2 384.705589 767.396624 -0.38394 -0.00014771 1.9596 0.00075386 1.5756 0.00060615 384.70570815444347 23.992 0.24519 23.992 23.893 24.138 0 16 11 2 0 0 0 8.7369 1 12257 12257 0.79363 0 1 315650 + 68992 17756 45925 46948 80564 80564 0.0036218998004642344 VGFLFRRSA 9 Unmodified _VGFLFRRSA_ 0 0 0 REV__ENSG00000170412|ENST00000392627|GPRC5C REV__ENSG00000170412|ENST00000392627|GPRC5C MSMS AL20221201_MKP_PDAC_01 4 351.5372009277344 3 351.538176 1051.5927 NaN NaN NaN NaN NaN NaN NaN 15.734 1 13.207 12.707 13.707 -2.5273 0 0 0 0.84737 1 8099 8099 0.96228 0.33545 1 + 68993 22479 45926 46949 80565 80565 0.06896575153928097 VGFLIPEGWF 10 Unmodified _VGFLIPEGWF_ 0 0 0 ENST00000378875.7_1_19:36501824-36503972:-|nuORF;ENST00000468004.5_1_19:36501827-36504438:-|nuORF;nc|ENSG00000239382|Q3KRA9-3|ALKBH6 ENST00000378875.7_1_19:36501824-36503972:-|nuORF ENST00000378875.7_1_19:36501824-36503972:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2101440429688 3 388.874454 1163.60153 NaN NaN NaN NaN NaN NaN NaN 17.768 1 17.782 17.282 18.282 0.013865 0 0 0 0.98914 1 8860 8860 0.77653 0 1 68994 12555 45927 46950 80566 80566 0.02627503999747205 VGFLVLMVVL 10 Unmodified _VGFLVLMVVL_ 0 0 0 ENST00000535313.1_1_12:7309311-7310674:+|nuORF;nc|ENSG00000139182|Q9BQT9-3|CLSTN3;ENST00000331148.5_1_12:7308690-7310592:+|nuORF;ENSG00000139182|ENST00000266546|CLSTN3;nc|ENSG00000139182|Q9BQT9-2|CLSTN3 ENST00000535313.1_1_12:7309311-7310674:+|nuORF ENST00000535313.1_1_12:7309311-7310674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8951721191406 3 363.896201 1088.66677 -0.54642 -0.00019884 -1.9802 -0.0007206 -2.5266 -0.00091944 363.8956927471623 19.153 0.19993 19.176 19.088 19.288 0.023106 26 10 3 0 0 0 0.7191 1 9645 9645 0.77653 0.37582 1 986820 68995 5133 45928 46951 80567 80567 0.12598782201234826 VGFPLRYA 8 Unmodified _VGFPLRYA_ 0 0 0 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 ENSG00000155269|ENST00000382487|GPR78 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 924.5191040039062 1 922.514514 921.507237 0.46388 0.00042794 -0.29584 -0.00027292 0.16804 0.00015502 922.514504993296 73.198 0.29404 73.24 73.108 73.402 0.041725 29 13 3 0 0 0 0.80975 1 40381 40381 0.79363 0 1 4793100 68996 6378 45929 46952 80568 80568 0.043344099682599335 VGFQNPFS 8 Unmodified _VGFQNPFS_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MSMS AL20221201_MKP_PDAC_01 4 448.2177429199219 2 448.21906 894.423567 NaN NaN NaN NaN NaN NaN NaN 15.68 1 13.153 12.653 13.653 -2.5273 0 0 0 0.97444 1 8067 8067 2.5775 0 1 68997 873 45930 46953 80569 80569 -0.027867461994333098 VGFRFDISL 9 Unmodified _VGFRFDISL_ 0 0 0 ENST00000470260.1_1_7:99752636-99753198:-|nuORF ENST00000470260.1_1_7:99752636-99753198:-|nuORF ENST00000470260.1_1_7:99752636-99753198:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8623962402344 3 351.862437 1052.56548 0.8608 0.00030288 -0.24996 -8.795E-05 0.61085 0.00021493 351.8623490389304 42.769 0.3232 42.769 42.586 42.909 0 49 16 4 0 0 0 0.58865 1 23254 23254 1.0715 0 1 16850000 68998 13851 45931 46954 80570 80570 0.04130046822888289 VGFRFRRL 8 Unmodified _VGFRFRRL_ 0 0 0 ENST00000564526.1_1_16:85009951-85010841:-|nuORF;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7 ENST00000564526.1_1_16:85009951-85010841:-|nuORF ENST00000564526.1_1_16:85009951-85010841:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.5493469238281 3 350.882166 1049.62467 NaN NaN NaN NaN NaN NaN NaN 21.816 1 21.83 21.33 22.33 0.013796 0 0 0 0.97444 1 11190 11190 1.8442 0.6509 1 68999 6273 45932 46955 80571 80571 0.10183987627738134 VGFRSGLGAEL 11 Unmodified _VGFRSGLGAEL_ 0 0 0 REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.2046203613281 3 369.204862 1104.59276 1.2051 0.00044493 -0.41366 -0.00015273 0.79145 0.00029221 369.2047109267831 31.501 0.34151 27.805 27.642 27.983 -3.6958 30 17 2 0 0 0 0.48615 1 17908 17908 17.863 2.6147 1 73140000 + 69000 25248 45933 46956 80572 80572 0.04464530363270569 VGFRWWGSL 9 Unmodified _VGFRWWGSL_ 0 0 0 REV__ENST00000225728.7_1_17:6553749-6554885:-|nuORF REV__ENST00000225728.7_1_17:6553749-6554885:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2598876953125 2 554.290351 1106.56615 0.79865 0.00044268 1.8526 0.0010269 2.6513 0.0014696 554.2913336130124 57.511 0.1781 57.511 57.395 57.573 0 13 7 3 0 0 0 0.20528 1 31973 31973 8.5933 1.304 1 2815900 + 69001 24782 45934 46957 80573 80573 0.01712886262612301 VGFSFTMIGFL 11 Unmodified _VGFSFTMIGFL_ 0 0 0 REV__ENSG00000166930|ENST00000300190|MS4A5 REV__ENSG00000166930|ENST00000300190|MS4A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8795776367188 3 406.879099 1217.61547 -0.53863 -0.00021916 0.68981 0.00028067 0.15117 6.151E-05 406.87940252703817 14.53 0.16318 14.499 14.408 14.572 -0.030868 105 44 3 0 0 0 0.73992 1 7035 7035 0.50596 0.09769 1 2207000 + 69002 22166 45935 46958 80574 80574 0.015364134365427162 VGFSHYYSP 9 Unmodified _VGFSHYYSP_ 0 0 0 REV__ENSG00000135697|ENST00000258168|BCO1 REV__ENSG00000135697|ENST00000258168|BCO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7417602539062 2 528.742899 1055.47125 NaN NaN NaN NaN NaN NaN NaN 21.218 1 21.218 20.718 21.718 0 0 0 0 0.84564 1 10721 10721 2.0598 0.21551 1 + 69003 20090 45936 46959 80575 80575 -0.054270919992632116 VGFSQVCSTRF 11 Unmodified _VGFSQVCSTRF_ 0 0 0 ENST00000404424.5_1_2:29336935-29337001:+|nuORF ENST00000404424.5_1_2:29336935-29337001:+|nuORF ENST00000404424.5_1_2:29336935-29337001:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.8702697753906 3 410.869374 1229.58629 NaN NaN NaN NaN NaN NaN NaN 19.751 1 17.095 16.595 17.595 -2.6564 0 0 0 0.9385 1 10487 10487 1.4551 0 1 69004 12915 45937 46960 80576 80576 -0.019317308597464944 VGFWFNFF 8 Unmodified _VGFWFNFF_ 0 0 0 ENST00000358127.8_1_9:36833483-36833678:-|nuORF ENST00000358127.8_1_9:36833483-36833678:-|nuORF ENST00000358127.8_1_9:36833483-36833678:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.8450927734375 3 355.172723 1062.49634 1.9474 0.00069167 3.9382 0.0013987 5.8856 0.0020904 355.1745949628613 40.937 0.25468 36.329 36.244 36.499 -4.6079 28 15 2 0 0 0 8.7369 1 24498 24498 3.9444 0 1 17332000 69005 12122 45938 46961 80577 80577 -0.0324099240601754 VGFWIFVGLL 10 Unmodified _VGFWIFVGLL_ 0 0 0 REV__nc|ENSG00000196277|Q14831-5|GRM7 REV__nc|ENSG00000196277|Q14831-5|GRM7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2272338867188 3 384.226827 1149.65865 NaN NaN NaN NaN NaN NaN NaN 17.738 1 17.751 17.251 18.251 0.013865 0 0 0 1.0019 1 8842 8842 0.15932 0 1 + 69006 23811 45939 46962 80578 80578 0.08980971276128003 VGFWQLPFQ 9 Unmodified _VGFWQLPFQ_ 0 0 0 REV__nc|ENSG00000181019|P15559-2|NQO1 REV__nc|ENSG00000181019|P15559-2|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5304870605469 3 374.530798 1120.57057 0.11264 4.2188E-05 -0.73354 -0.00027474 -0.6209 -0.00023255 374.5301976437775 21.672 0.14919 21.685 21.609 21.758 0.013796 15 10 2 0 0 0 0.61256 1 11133 11133 0.26902 0 1 1152700 + 69007 23183 45940 46963 80579 80579 0.015103506854984516 VGFWQLPFQ 9 Unmodified _VGFWQLPFQ_ 0 0 0 REV__nc|ENSG00000181019|P15559-2|NQO1 REV__nc|ENSG00000181019|P15559-2|NQO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 374.530798 1120.57057 -0.22373 -8.3794E-05 -0.39509 -0.00014797 -0.61882 -0.00023177 374.8651092170485 21.654 0.14969 21.677 21.594 21.744 0.022896 -0.0041729 0.00020471 NaN 0.26902 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 611140 + 69008 23183 45940 46963 0.015103506854984516 VGFYFWINT 9 Unmodified _VGFYFWINT_ 0 0 0 REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.8594970703125 3 382.858804 1145.55458 NaN NaN NaN NaN NaN NaN NaN 13.374 1 10.892 10.392 11.392 -2.482 0 0 0 0.85737 1 6779 6779 0.26902 0.1097 1 + 69009 22319 45941 46964 80580 80580 -0.012373555513931933 VGFYFWINT 9 Unmodified _VGFYFWINT_ 0 0 0 REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.85888671875 3 382.858804 1145.55458 NaN NaN NaN NaN NaN NaN NaN 13.993 1 11.49 10.99 11.99 -2.5029 0 0 0 0.85737 1 7093 7093 0.26902 0.1097 1 + 69010 22319 45941 46964 80581 80581 -0.012373555513931933 VGFYGRKF 8 Unmodified _VGFYGRKF_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2664794921875 2 487.266345 972.518136 NaN NaN NaN NaN NaN NaN NaN 22.144 1 22.144 21.644 22.644 0 0 0 0 0.97444 1 11253 11253 0.79363 0 1 69011 1491 45942 46965 80582 80582 0.03077812342564812 VGFYLTYPP 9 Unmodified _VGFYLTYPP_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8511352539062 3 352.851538 1055.53278 NaN NaN NaN NaN NaN NaN NaN 17.942 1 17.956 17.456 18.456 0.013865 0 0 0 0.85737 1 8959 8959 0.26902 0 1 69012 2719 45943 46966 80583 80583 0.00723839700026474 VGFYWFCKQ 9 Unmodified _VGFYWFCKQ_ 0 0 0 REV__ENST00000496584.1_1_3:112189035-112189236:-|nuORF REV__ENST00000496584.1_1_3:112189035-112189236:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.276611328125 2 589.278595 1176.54264 NaN NaN NaN NaN NaN NaN NaN 14.724 1 14.724 14.224 15.224 0 0 0 0 0.85737 1 7025 7025 0.6015 0 1 + 69013 27967 45944 46967 80584 80584 -0.03857295566240282 VGGADTEL 8 Unmodified _VGGADTEL_ 0 0 0 ENST00000463181.5_1_7:26232110-26232158:-|nuORF;ENST00000356674.7_2_7:26231930-26232167:-|nuORF ENST00000463181.5_1_7:26232110-26232158:-|nuORF ENST00000463181.5_1_7:26232110-26232158:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 381.1890563964844 2 381.187426 760.360298 NaN NaN NaN NaN NaN NaN NaN 43.337 1 38.573 38.073 39.073 -4.7648 0 0 0 0.95607 1 26312 26312 9.3474 0.75416 1 69014 12096 45945 46968 80585 80585 -0.02946731707345407 VGGAHVVI 8 Unmodified _VGGAHVVI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2272033691406 2 376.226688 750.438824 -0.1738 -6.5387E-05 -0.25362 -9.5419E-05 -0.42742 -0.00016081 376.22676122501014 31.061 0.17924 31.061 30.953 31.132 0 13 8 2 0 0 0 0.80624 1 16173 16173 2.8892 0 1 1067800 + 69015 21279 45946 46969 80586 80586 0.0536216538843064 VGGAHVVI 8 Unmodified _VGGAHVVI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2271423339844 2 376.226688 750.438824 NaN NaN NaN NaN NaN NaN NaN 31.067 1 30.964 30.464 31.464 -0.10269 0 0 0 0.97444 1 16138 16138 2.8892 0 1 + 69016 21279 45946 46969 80587 80587 0.0536216538843064 VGGAHVVI 8 Unmodified _VGGAHVVI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 376.226688 750.438824 -0.1738 -6.5387E-05 -0.25362 -9.5419E-05 -0.42742 -0.00016081 376.22676122501014 31.061 0.17924 31.061 30.953 31.132 0 0 0 NaN 2.8892 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1067800 + 69017 21279 45946 46969 0.0536216538843064 VGGAKYLPD 9 Unmodified _VGGAKYLPD_ 0 0 0 nc|ENSG00000187010|Q02161-6|RHD nc|ENSG00000187010|Q02161-6|RHD nc|ENSG00000187010|Q02161-6|RHD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.2481079101562 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 22.66 1 22.66 22.16 23.16 0 0 0 0 0.82396 1 11529 11529 4.756 0 1 69018 16465 45947 46970 80588 80588 0.01858096006139931 VGGASFPHQSG 11 Unmodified _VGGASFPHQSG_ 0 0 0 REV__ENSG00000165821|ENST00000537235|SALL2 REV__ENSG00000165821|ENST00000537235|SALL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7537841796875 2 522.24888 1042.48321 1.1108 0.00058013 3.7128 0.001939 4.8237 0.0025191 522.7528336174249 42.772 0.29206 38.087 37.934 38.226 -4.6846 25 18 2 0 0 0 0.56638 1 25850 25850 13.042 1.4022 1 12669000 + 69019 22055 45948 46971 80589 80589 -0.03633475256037855 VGGAVYHQV 9 Unmodified _VGGAVYHQV_ 0 0 0 REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2450561523438 2 465.245609 928.476666 -0.28612 -0.00013311 -0.010317 -4.7999E-06 -0.29643 -0.00013791 465.24509051185527 21.955 0.20237 21.978 21.895 22.097 0.022896 12 8 2 0 0 0 0.55144 1 11158 11158 4.3292 0 1 406030 + 69020 26906 45949 46972 80590 80590 0.009566315832330474 VGGCETGL 8 Unmodified _VGGCETGL_ 0 0 0 ENST00000379263.7_1_7:102985147-102985279:-|nuORF ENST00000379263.7_1_7:102985147-102985279:-|nuORF ENST00000379263.7_1_7:102985147-102985279:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.1709899902344 2 368.170721 734.32689 NaN NaN NaN NaN NaN NaN NaN 15.489 1 12.962 12.462 13.462 -2.5273 0 0 0 0.97444 1 7951 7951 2.8892 0 1 69021 12562 45950 46973 80591 80591 -0.050900567508847416 VGGDKPTF 8 Unmodified _VGGDKPTF_ 0 0 0 ENSG00000132003|ENST00000590508|ZSWIM4 ENSG00000132003|ENST00000590508|ZSWIM4 ENSG00000132003|ENST00000590508|ZSWIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.7137756347656 2 410.713611 819.412668 0.56292 0.0002312 -0.12387 -5.0877E-05 0.43904 0.00018032 410.71378261046345 28.045 0.16126 27.998 27.901 28.062 -0.046408 6 5 2 0 0 0 0.80143 1 14488 14488 5.7604 0 1 1941600 69022 4365 45951 46974 80592 80592 -0.004261485737174553 VGGDPFPA 8 Unmodified _VGGDPFPA_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant;nc|ENSG00000128591|Q14315-2|FLNC ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.1876525878906 2 380.187229 758.359904 1.4686 0.00055833 0.36664 0.00013939 1.8352 0.00069772 380.18747087433724 48.569 0.46244 43.173 42.856 43.318 -5.3961 55 27 3 0 0 0 0.77907 1 30181 30181 10.183 10.183 1 19232000 69023 4073 45952 46975 80593 80593 -0.02894106636529159 VGGDSCDTCED 11 Unmodified _VGGDSCDTCED_ 0 0 0 nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.K1555Efs*16|1|0.1|ENSG00000053747|chr18:23864857-23864858|-/A|frameshift_variant nc|ENSG00000053747|Q16787-3|LAMA3 nc|ENSG00000053747|Q16787-3|LAMA3 MSMS AL20221201_MKP_PDAC_01 4 367.4556884765625 3 367.455078 1099.3434 NaN NaN NaN NaN NaN NaN NaN 18.616 1 15.995 15.495 16.495 -2.6215 0 0 0 0.94337 1 9817 9817 0.094841 0.094841 1 69024 748 45953 46976 80594 80594 -0.20229388437769558 VGGELLMQQY 10 Unmodified _VGGELLMQQY_ 0 0 0 REV__nc|ENSG00000085433|O94967-2|WDR47 REV__nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2822875976562 2 569.284074 1136.5536 0.51524 0.00029332 -1.4801 -0.00084259 -0.96484 -0.00054927 569.283115268344 74.737 0.48442 74.737 74.52 75.004 0 41 23 2 0 0 0 0.66569 1 41706 41706 6.7232 2.3939 1 950260 + 69025 17749 45954 46977 80595 80595 -0.009219379825935903 VGGETENN 8 Unmodified _VGGETENN_ 0 0 0 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 ENSG00000118193|ENST00000367350|KIF14 MSMS AL20221201_MKP_PDAC_01 4 410.5142211914062 2 410.177589 818.340626 NaN NaN NaN NaN NaN NaN NaN 17.828 1 15.242 14.742 15.742 -2.5866 0 0 0 0.97444 1 9354 9354 5.2307 2.3415 1 69026 3355 45955 46978 80596 80596 -0.07581107718090152 VGGEVHVAL 9 Unmodified _VGGEVHVAL_ 0 0 0 ENSG00000164849|ENST00000444847|GPR146 ENSG00000164849|ENST00000444847|GPR146 ENSG00000164849|ENST00000444847|GPR146 MSMS AL20221201_MKP_PDAC_01 4 440.7477111816406 2 440.747985 879.481417 NaN NaN NaN NaN NaN NaN NaN 41.414 1 36.806 36.306 37.306 -4.6079 0 0 0 0.071041 1 24866 24866 50.855 12.704 1 69027 7251 45956 46979 80597 80597 0.03685515725987898 VGGFFTKR 8 Unmodified _VGGFFTKR_ 0 0 0 nc|ENSG00000155754|Q53TS8-2|C2CD6 nc|ENSG00000155754|Q53TS8-2|C2CD6 nc|ENSG00000155754|Q53TS8-2|C2CD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.2593688964844 2 456.25852 910.502486 NaN NaN NaN NaN NaN NaN NaN 22.389 1 22.389 21.889 22.889 0 0 0 0 0.97444 1 11385 11385 0.79363 0 1 69028 16289 45957 46980 80598 80598 0.043655258255284934 VGGFGGERG 9 Unmodified _VGGFGGERG_ 0 0 0 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2073059082031 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 19.714 1 19.714 19.214 20.214 0 0 0 0 0.82739 1 9880 9880 4.3292 1.44 1 + 69029 29735 45958 46981 80599 80599 -0.02540801001998716 VGGFGGERG 9 Unmodified _VGGFGGERG_ 0 0 0 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2068786621094 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 17.667 1 17.68 17.18 18.18 0.013865 0 0 0 0.84737 1 8803 8803 1.8442 1.0506 1 + 69030 29735 45958 46981 80600 80600 -0.02540801001998716 VGGFGGERG 9 Unmodified _VGGFGGERG_ 0 0 0 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 MSMS AL20221201_MKP_PDAC_01 4 418.5453796386719 2 418.206484 834.398415 NaN NaN NaN NaN NaN NaN NaN 22.552 1 19.774 19.274 20.274 -2.7784 0 0 0 0.82739 1 12134 12134 4.3292 1.44 1 + 69031 29735 45958 46981 80601 80601 -0.02540801001998716 VGGFSCSC 8 Unmodified _VGGFSCSC_ 0 0 0 nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 nc|ENSG00000196159|Q6V0I7-3|FAT4 MSMS AL20221201_MKP_PDAC_01 4 380.1435241699219 2 380.143649 758.272746 NaN NaN NaN NaN NaN NaN NaN 23.27 1 20.491 19.991 20.991 -2.7784 0 0 0 0.97444 1 12586 12586 2.8892 0 1 69032 9772 45959 46982 80602 80602 -0.11605972174095314 VGGFTQERARL 11 Unmodified _VGGFTQERARL_ 0 0 0 REV__ENSG00000101441|ENST00000217423|CST4 REV__ENSG00000101441|ENST00000217423|CST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.8951721191406 3 411.894799 1232.66257 -0.53771 -0.00022148 0.53292 0.00021951 -0.0047897 -1.9728E-06 411.8950632812889 19.019 0.14384 19.042 18.944 19.088 0.023106 22 8 4 0 0 0 0.70147 1 9555 9555 4.1166 0.79699 1 3840600 + 69033 18173 45960 46983 80603 80603 0.055544090319017414 VGGFTQERARL 11 Unmodified _VGGFTQERARL_ 0 0 0 REV__ENSG00000101441|ENST00000217423|CST4 REV__ENSG00000101441|ENST00000217423|CST4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 411.894799 1232.66257 -0.55775 -0.00022974 0.31063 0.00012795 -0.24712 -0.00010179 411.8950530145114 19.166 0.1396 19.166 19.078 19.217 0 0.06009 -0.00050867 NaN 4.1166 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2568500 + 69034 18173 45960 46983 0.055544090319017414 VGGFTQERARL 11 Unmodified _VGGFTQERARL_ 0 0 0 REV__ENSG00000101441|ENST00000217423|CST4 REV__ENSG00000101441|ENST00000217423|CST4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 411.894799 1232.66257 -0.53771 -0.00022148 0.53292 0.00021951 -0.0047897 -1.9728E-06 411.8950632812889 19.019 0.14384 19.042 18.944 19.088 0.023106 -0.063905 -0.00023399 NaN 4.1166 22 8 4 NaN NaN NaN NaN 0 NaN NaN 0 3840600 + 69035 18173 45960 46983 0.055544090319017414 VGGGKRLH 8 Unmodified _VGGGKRLH_ 0 0 0 REV__ENST00000571394.1_1_17:80918331-80919063:-|nuORF REV__ENST00000571394.1_1_17:80918331-80919063:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 411.7166137695312 2 412.248486 822.48242 1.3824 0.00056988 -3.1117 -0.0012828 -1.7294 -0.00071293 412.2473413945001 21.318 0.26703 18.583 18.43 18.697 -2.7348 33 23 2 0 0 0 8.7369 1 11379 11379 2.8892 0 1 6044100 + 69036 22888 45961 46984 80604 80604 0.06407774885553863 VGGGNLTN 8 Unmodified _VGGGNLTN_ 0 0 0 ENSG00000128253|ENST00000652607|RFPL2 ENSG00000128253|ENST00000652607|RFPL2 ENSG00000128253|ENST00000652607|RFPL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1867370605469 2 366.18776 730.360967 NaN NaN NaN NaN NaN NaN NaN 17.969 1 17.969 17.469 18.469 0 0 0 0 0.97444 1 8900 8900 0.79363 0 1 69037 4052 45962 46985 80605 80605 -0.014998922676340953 VGGGTSGS 8 Unmodified _VGGGTSGS_ 0 0 0 ENSG00000131264|ENST00000373514|CDX4 ENSG00000131264|ENST00000373514|CDX4 ENSG00000131264|ENST00000373514|CDX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.7906494140625 1 621.283845 620.276569 0.53592 0.00033296 0.97662 0.00060676 1.5125 0.00093972 621.2849296971724 79.243 0.1535 79.298 79.21 79.363 0.05497 8 5 2 0 0 0 8.7369 1 43728 43728 0.79363 0 1 2289700 69038 4314 45963 46986 80606 80606 -0.0487584308436908 VGGHHTSI 8 Unmodified _VGGHHTSI_ 0 0 0 ENSG00000180644|ENST00000441259|PRF1 ENSG00000180644|ENST00000441259|PRF1 ENSG00000180644|ENST00000441259|PRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2086791992188 2 404.209027 806.403501 NaN NaN NaN NaN NaN NaN NaN 25.012 1 25.012 24.512 25.512 0 0 0 0 0.97348 1 12805 12805 5.7604 1.0044 1 69039 8916 45964 46987 80607 80607 -0.007444971393738342 VGGHKLGR 8 Unmodified _VGGHKLGR_ 0 0 0 REV__nc|ENSG00000182648|Q8NI28|RNF32-DT REV__nc|ENSG00000182648|Q8NI28|RNF32-DT MSMS AL20221201_MKP_PDAC_01 4 411.8119812011719 2 412.248486 822.48242 NaN NaN NaN NaN NaN NaN NaN 14.931 1 12.404 11.904 12.904 -2.5273 0 0 0 0.97444 1 7619 7619 0.79363 0 1 + 69040 29838 45965 46988 80608 80608 0.064077748855766 VGGHQYHISL 10 Unmodified _VGGHQYHISL_ 0 0 0 REV__nc|ENSG00000089876|Q7L7V1-2|DHX32 REV__nc|ENSG00000089876|Q7L7V1-2|DHX32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7887573242188 2 555.788173 1109.56179 NaN NaN NaN NaN NaN NaN NaN 94.36 1 93.939 93.439 94.439 -0.42044 0 0 0 0.98914 1 51554 51554 1.8442 0 1 + 69041 17848 45966 46989 80609 80609 0.011393770490485622 VGGHSDHG 8 Unmodified _VGGHSDHG_ 0 0 0 ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B ENSG00000182348|ENST00000333190|ZNF804B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.1678771972656 2 383.167359 764.320165 NaN NaN NaN NaN NaN NaN NaN 17.542 1 17.547 17.047 18.047 0.0050564 0 0 0 0.97444 1 8853 8853 0.79363 0 1 69042 9049 45967 46990 80610 80610 -0.07142233587228475 VGGIPEVLPEN 11 Unmodified _VGGIPEVLPEN_ 0 0 0 ENSG00000165195|ENST00000333590|PIGA;nc|ENSG00000165195|P37287-3|PIGA;nc|ENSG00000165195|P37287-2|PIGA ENSG00000165195|ENST00000333590|PIGA;nc|ENSG00000165195|P37287-2|PIGA ENSG00000165195|ENST00000333590|PIGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.3016357421875 2 562.303321 1122.59209 -0.14563 -8.1888E-05 -0.37622 -0.00021155 -0.52185 -0.00029344 562.3031070737609 21.079 0.18468 21.079 20.964 21.149 0 67 31 3 0 0 0 0.7326 1 10593 10593 1.1933 0 1 3001000 69043 7308;16351 45968 46991 80611 80611 0.035696909235639396 VGGISLIVAL 10 Unmodified _VGGISLIVAL_ 0 0 0 REV__ENSG00000115084|ENST00000245680|SLC35F5 REV__ENSG00000115084|ENST00000245680|SLC35F5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.3059692382812 2 471.305136 940.595718 0.23524 0.00011087 0.21212 9.9974E-05 0.44736 0.00021084 471.3051354228127 54.969 0.33529 54.9 54.703 55.038 -0.068737 30 16 3 0 0 0 0.1028 1 29833 29833 46.021 2.2486 1 3361300 + 69044 18950 45969 46992 80612 80612 0.12304405488100656 VGGIVHIF 8 Unmodified _VGGIVHIF_ 0 0 0 REV__ENSG00000176269|ENST00000320901|OR4F21 REV__ENSG00000176269|ENST00000320901|OR4F21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.2503051757812 2 421.250163 840.485774 0.83874 0.00035332 -0.17948 -7.5606E-05 0.65926 0.00027771 421.2500575707598 92.833 0.45974 86.657 86.346 86.806 -6.1757 36 28 2 0 0 0 0.61999 2 61252 61252;61379 24.21 7.1234 1 17078000 + 69045 22922 45970 46993 80613;80614 80613 0.05915024939554314 VGGIWVGH 8 Unmodified _VGGIWVGH_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.7236328125 2 412.724313 823.434072 -0.43246 -0.00017849 -0.14644 -6.0439E-05 -0.5789 -0.00023893 412.72430818947396 36.533 0.21022 36.283 36.172 36.383 -0.2497 16 9 2 0 0 0 0.80044 1 19159 19159 6.3541 0 1 4235300 + 69046 16944 45971 46994 80615 80615 0.015292812456550564 VGGIWVGH 8 Unmodified _VGGIWVGH_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 412.724313 823.434072 -0.43246 -0.00017849 -0.14644 -6.0439E-05 -0.5789 -0.00023893 412.72430818947396 36.533 0.21022 36.283 36.172 36.383 -0.2497 0.035082 -0.00057346 NaN 6.3541 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4235300 + 69047 16944 45971 46994 0.015292812456550564 VGGIWVGH 8 Unmodified _VGGIWVGH_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 412.724313 823.434072 -0.35795 -0.00014773 1.1791 0.00048664 0.82114 0.0003389 412.7248184189472 36.188 0.10371 36.213 36.168 36.272 0.024971 -0.035082 0.00052069 NaN 6.3541 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 586480 + 69048 16944 45971 46994 0.015292812456550564 VGGKAPRL 8 Unmodified _VGGKAPRL_ 0 0 0 ENST00000565298.5_1_16:1576517-1634259:-|nuORF ENST00000565298.5_1_16:1576517-1634259:-|nuORF ENST00000565298.5_1_16:1576517-1634259:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.75146484375 2 399.253237 796.491922 -0.39148 -0.0001563 -4.3376 -0.0017318 -4.7291 -0.0018881 399.2513401172661 29.481 0.30619 29.481 29.202 29.508 0 21 14 2 0 0 0 8.7369 1 15239 15239 2.5775 0 1 2915700 69049 15402 45972 46995 80616 80616 0.08553543171092315 VGGKMATHL 9 Unmodified _VGGKMATHL_ 0 0 0 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7498474121094 2 457.249837 912.485122 0.33018 0.00015098 -2.9326 -0.0013409 -2.6024 -0.00119 457.24860635269397 27.045 0.1885 27.013 26.92 27.108 -0.031706 16 10 3 0 0 0 0.16226 1 13924 13924 26.884 3.7352 1 24761000 + 69050 22131 45973 46996 80617 80617 0.02537862228200538 VGGKMATHL 9 Unmodified _VGGKMATHL_ 0 0 0 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 457.249837 912.485122 -0.1811 -8.2806E-05 -3.8118 -0.0017429 -3.9929 -0.0018257 457.24800603462575 27.065 0.24404 27.065 26.952 27.196 0 0.018891 2.3283E-05 NaN 26.884 33 11 4 NaN NaN NaN NaN 0 NaN NaN 0 17222000 + 69051 22131 45973 46996 0.02537862228200538 VGGKMATHL 9 Unmodified _VGGKMATHL_ 0 0 0 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 REV__nc|ENSG00000166535|A8K2U0-2|A2ML1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.249837 912.485122 0.33018 0.00015098 -2.9326 -0.0013409 -2.6024 -0.00119 457.24860635269397 27.045 0.1885 27.013 26.92 27.108 -0.031706 -0.032588 0.00082729 NaN 26.884 16 10 3 NaN NaN NaN NaN 0 NaN NaN 0 24761000 + 69052 22131 45973 46996 0.02537862228200538 VGGKQAVF 8 Unmodified _VGGKQAVF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 403.2334899902344 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 3.4672 1 0.98524 0.48524 1.4852 -2.482 0 0 0 0.97444 1 1762 1762 2.8892 0 1 69053 1980 45974 46997 80618 80618 0.039341480428561226 VGGKQAVF 8 Unmodified _VGGKQAVF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 403.2339172363281 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 4.0043 1 1.5223 1.0223 2.0223 -2.482 0 0 0 0.97444 1 2031 2031 2.8892 0 1 69054 1980 45974 46997 80619 80619 0.039341480428561226 VGGKQAVF 8 Unmodified _VGGKQAVF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 403.2332763671875 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 4.3489 1 1.867 1.367 2.367 -2.482 0 0 0 0.97444 1 2207 2207 2.8892 0 1 69055 1980 45974 46997 80620 80620 0.039341480428561226 VGGKQAVF 8 Unmodified _VGGKQAVF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 403.2332153320312 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 6.3191 1 3.8371 3.3371 4.3371 -2.482 0 0 0 0.97444 1 3196 3196 2.8892 0 1 69056 1980 45974 46997 80621 80621 0.039341480428561226 VGGKQHLL 8 Unmodified _VGGKQHLL_ 0 0 0 nc|ENSG00000126785|Q9H4E5-2|RHOJ;ENSG00000126785|ENST00000316754|RHOJ nc|ENSG00000126785|Q9H4E5-2|RHOJ nc|ENSG00000126785|Q9H4E5-2|RHOJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2590637207031 2 426.25852 850.502486 -0.26734 -0.00011396 0.74988 0.00031964 0.48254 0.00020569 426.2588992735993 33.868 0.34242 33.676 33.427 33.77 -0.19131 28 13 3 0 0 0 0.65867 1 17645 17645 20.871 0 1 1217600 69057 3969 45975 46998 80622 80622 0.07125525825529166 VGGKRAQL 8 Unmodified _VGGKRAQL_ 0 0 0 ENSG00000205403|ENST00000394634|CFI ENSG00000205403|ENST00000394634|CFI ENSG00000205403|ENST00000394634|CFI MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.7565612792969 2 414.756144 827.497735 0.47444 0.00019678 0.25726 0.0001067 0.7317 0.00030348 414.7561645078553 24.203 0.32704 21.375 21.159 21.486 -2.8273 30 17 2 0 0 0 0.77907 1 13213 13213 10.183 3.8293 1 7566500 69058 10365 45976 46999 80623 80623 0.07708641682756934 VGGLACRF 8 Unmodified _VGGLACRF_ 0 0 0 REV__ENST00000490617.1_1_X:13671314-13673422:+|nuORF REV__ENST00000490617.1_1_X:13671314-13673422:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7169799804688 2 411.718173 821.421793 NaN NaN NaN NaN NaN NaN NaN 18.783 1 18.806 18.306 19.306 0.023106 0 0 0 0.97444 1 9441 9441 2.8892 0 1 + 69059 27879 45977 47000 80624 80624 0.00393921510965356 VGGLACRF 8 Unmodified _VGGLACRF_ 0 0 0 REV__ENST00000490617.1_1_X:13671314-13673422:+|nuORF REV__ENST00000490617.1_1_X:13671314-13673422:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.7161865234375 2 411.718173 821.421793 NaN NaN NaN NaN NaN NaN NaN 17.359 1 14.773 14.273 15.273 -2.5866 0 0 0 0.95607 1 9069 9069 9.3474 0 1 + 69060 27879 45977 47000 80625 80625 0.00393921510965356 VGGLAFFTL 9 Unmodified _VGGLAFFTL_ 0 0 0 REV__ENST00000409161.5_1_11:70508092-70508251:-|nuORF REV__ENST00000409161.5_1_11:70508092-70508251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7627258300781 2 462.763104 923.511654 -0.11931 -5.5211E-05 -0.30263 -0.00014004 -0.42193 -0.00019526 462.7629289613035 60.374 0.27987 59.883 59.708 59.988 -0.49079 31 13 3 0 0 0 0.10925 1 32932 32932 32.117 0 1 14240000 + 69061 26679 45978 47001 80626 80626 0.046838743911848724 VGGLAGIVAV 10 Unmodified _VGGLAGIVAV_ 0 0 0 ENSG00000112077|ENST00000371175|RHAG ENSG00000112077|ENST00000371175|RHAG ENSG00000112077|ENST00000371175|RHAG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2681579589844 2 428.268553 854.522553 -0.12688 -5.4337E-05 -0.033944 -1.4537E-05 -0.16082 -6.8874E-05 428.2685500665157 32.34 0.14993 32.211 32.095 32.245 -0.12915 8 5 2 0 0 0 0.57332 1 16847 16847 12.532 0 1 898780 69062 2855 45979 47002 80627 80627 0.0894727676546836 VGGLAGIVAV 10 Unmodified _VGGLAGIVAV_ 0 0 0 ENSG00000112077|ENST00000371175|RHAG ENSG00000112077|ENST00000371175|RHAG ENSG00000112077|ENST00000371175|RHAG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 428.268553 854.522553 -1.1143 -0.00047723 0.80603 0.0003452 -0.3083 -0.00013203 428.26881433867874 32.325 0.11289 32.325 32.242 32.355 0 0.056867 0.00043261 NaN 12.532 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 969090 69063 2855 45979 47002 0.0894727676546836 VGGLLQAEEHE 11 Unmodified _VGGLLQAEEHE_ 0 0 0 REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13 REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7955322265625 2 591.293485 1180.57242 0.48366 0.00028598 2.4049 0.001422 2.8885 0.001708 591.796149301003 87.828 0.20518 87.324 87.195 87.4 -0.50423 12 8 2 0 0 0 0.73115 1 48064 48064 1.3295 0 1 696350 + 69064 19911 45980 47003 80628 80628 -0.01064685087203543 VGGLPRSRVVR 11 Unmodified _VGGLPRSRVVR_ 0 0 0 ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1;ENST00000490190.1_1_18:6964066-6965410:-|nuORF;ENST00000488064.5_1_18:6961676-6965410:-|nuORF ENST00000579014.5_1_18:6942080-7042306:-|nuORF ENST00000579014.5_1_18:6942080-7042306:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2501525878906 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 49.481 1 49.432 48.932 49.932 -0.048824 0 0 0 0.94287 1 26735 26735 0.45452 0.1855 1 69065 1986 45981 47004 80629 80629 0.14134698402403956 VGGLPSAKRF 10 Unmodified _VGGLPSAKRF_ 0 0 0 ENST00000589123.5_2_19:3464049-3464370:+|nuORF ENST00000589123.5_2_19:3464049-3464370:+|nuORF ENST00000589123.5_2_19:3464049-3464370:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3027954101562 2 516.303458 1030.59236 NaN NaN NaN NaN NaN NaN NaN 48.181 1 48.142 47.642 48.642 -0.038643 0 0 0 0.96981 1 25982 25982 3.9444 1.3669 1 69066 15662 45982 47005 80630 80630 0.07829155434069435 VGGNDAIN 8 Unmodified _VGGNDAIN_ 0 0 0 REV__ENST00000464195.1_1_1:2523250-2524264:-|nuORF REV__ENST00000464195.1_1_1:2523250-2524264:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.1844787597656 2 380.185217 758.355882 NaN NaN NaN NaN NaN NaN NaN 16.551 1 16.557 16.057 17.057 0.0050564 0 0 0 0.97444 1 8304 8304 0.79363 0 1 + 69067 27369 45983 47006 80631 80631 -0.032961961302476084 VGGNSWSS 8 Unmodified _VGGNSWSS_ 0 0 0 ENST00000450820.2_1_1:25580287-25594290:-|nuORF ENST00000450820.2_1_1:25580287-25594290:-|nuORF ENST00000450820.2_1_1:25580287-25594290:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.178466796875 2 397.177392 792.340232 NaN NaN NaN NaN NaN NaN NaN 15.732 1 15.738 15.238 16.238 0.0057774 0 0 0 0.97444 1 7854 7854 0.79363 0 1 69068 13512 45984 47007 80632 80632 -0.06424482647275909 VGGPADYH 8 Unmodified _VGGPADYH_ 0 0 0 nc|ENSG00000175040|Q9Y4C5-2|CHST2;ENSG00000175040|ENST00000309575|CHST2 nc|ENSG00000175040|Q9Y4C5-2|CHST2 nc|ENSG00000175040|Q9Y4C5-2|CHST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.1876525878906 2 408.18776 814.360967 NaN NaN NaN NaN NaN NaN NaN 19.963 1 19.963 19.463 20.463 0 0 0 0 0.97444 1 10019 10019 0.79363 0 1 69069 8478 45985 47008 80633 80633 -0.05363892267632764 VGGPHPCF 8 Unmodified _VGGPHPCF_ 0 0 0 REV__ENST00000586194.1_1_19:56204029-56204606:+|nuORF REV__ENST00000586194.1_1_19:56204029-56204606:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1891174316406 2 407.189248 812.363944 NaN NaN NaN NaN NaN NaN NaN 36.743 1 36.743 36.243 37.243 0 0 0 0 0.97444 1 19508 19508 2.8892 2.0956 1 + 69070 29108 45986 47009 80634 80634 -0.04974340414457856 VGGPLETVRII 11 Unmodified _VGGPLETVRII_ 0 0 0 REV__ENSG00000174004|ENST00000328557|NRROS REV__ENSG00000174004|ENST00000328557|NRROS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2354736328125 3 385.236163 1152.68666 NaN NaN NaN NaN NaN NaN NaN 18.696 1 18.702 18.202 19.202 0.0060463 0 0 0 0.93893 1 9484 9484 1.3296 0 1 + 69071 22763 45987 47010 80635 80635 0.1164224946558079 VGGPWIRE 8 Unmodified _VGGPWIRE_ 0 0 0 REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant REV__TLL1|p.G995Hfs*13|1|0.03|ENSG00000038295|chr4:166100815-166100816|-/ACATGATTGCAAGGAAGGTATGGAAC|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.283447265625 2 457.248152 912.481751 0.48513 0.00022182 -0.33669 -0.00015395 0.14844 6.7872E-05 457.24811112161564 26.921 0.23992 26.95 26.824 27.064 0.028664 15 10 2 0 0 0 8.7369 1 13933 13933 18.135 0 1 17539000 + 69072 17177 45988 47011 80636 80636 0.022009354458418784 VGGQQQQQI 9 Unmodified _VGGQQQQQI_ 0 0 0 REV__ENSG00000001167|ENST00000341376|NFYA REV__ENSG00000001167|ENST00000341376|NFYA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2561950683594 2 493.256705 984.498858 NaN NaN NaN NaN NaN NaN NaN 21.318 1 21.318 20.818 21.818 0 0 0 0 0.7453 1 10777 10777 7.9102 0.62092 1 + 69073 16926 45989 47012 80637 80637 0.0059881126099980975 VGGQSHNG 8 Unmodified _VGGQSHNG_ 0 0 0 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1756896972656 2 378.175184 754.335815 NaN NaN NaN NaN NaN NaN NaN 19.996 1 19.996 19.496 20.496 0 0 0 0 0.97444 1 10039 10039 0.79363 0 1 + 69074 17623 45990 47013 80638 80638 -0.05117947070186801 VGGRGKVY 8 Unmodified _VGGRGKVY_ 0 0 0 nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A nc|ENSG00000138623|O75326-2|SEMA7A MSMS AL20221201_MKP_PDAC_01 4 418.2431945800781 2 418.24287 834.471186 NaN NaN NaN NaN NaN NaN NaN 21.859 1 19.124 18.624 19.624 -2.7348 0 0 0 0.97444 1 11733 11733 2.8892 0.58649 1 69075 5073 45991 47014 80639 80639 0.04732952791414391 VGGRGNPF 8 Unmodified _VGGRGNPF_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000505822.1_1_5:65370974-65372269:+|nuORF nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2123718261719 2 402.211569 802.408586 NaN NaN NaN NaN NaN NaN NaN 32.481 1 32.351 31.851 32.851 -0.12915 0 0 0 0.97444 1 16913 16913 2.8892 0 1 69076 2925 45992 47015 80640 80640 -0.0005219327675831664 VGGRGNPF 8 Unmodified _VGGRGNPF_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000505822.1_1_5:65370974-65372269:+|nuORF nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MSMS AL20221201_MKP_PDAC_01 4 402.2121276855469 2 402.211569 802.408586 NaN NaN NaN NaN NaN NaN NaN 35.237 1 31.142 30.642 31.642 -4.0951 0 0 0 0.97444 1 20413 20413 2.8892 0 1 69077 2925 45992 47015 80641 80641 -0.0005219327675831664 VGGRGPLPT 9 Unmodified _VGGRGPLPT_ 0 0 0 REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF REV__ENST00000222990.7_1_7:2293201-2294050:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 427.2482299804688 2 427.248152 852.481751 0.41749 0.00017837 2.2534 0.00096276 2.6709 0.0011411 427.24936225729743 16.833 0.29843 14.276 14.1 14.398 -2.557 103 48 3 0 0 0 0.21819 1 8818 8818 2.0598 1.2661 1 10382000 + 69078 24767 45993 47016 80642 80642 0.049609354458425514 VGGRKRLS 8 Unmodified _VGGRKRLS_ 0 0 0 ENST00000534751.2_1_11:45235120-45235297:+|nuORF ENST00000534751.2_1_11:45235120-45235297:+|nuORF ENST00000534751.2_1_11:45235120-45235297:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7752685546875 2 436.774868 871.535184 1.0575 0.00046191 0.35486 0.000155 1.4124 0.0006169 436.7749211350576 90.047 0.659 83.872 83.544 84.203 -6.1757 106 37 4 0 0 0 0.80975 1 59303 59303 0.79363 0 1 164060000 69079 14958 45994 47017 80643 80643 0.09427732948381617 VGGRKRLS 8 Unmodified _VGGRKRLS_ 0 0 0 ENST00000534751.2_1_11:45235120-45235297:+|nuORF ENST00000534751.2_1_11:45235120-45235297:+|nuORF ENST00000534751.2_1_11:45235120-45235297:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 873.5458984375 1 872.54246 871.535184 0.89495 0.00078088 0.20326 0.00017735 1.0982 0.00095823 872.5423218597107 90.046 0.47855 83.871 83.631 84.11 -6.1757 46 26 2 0 0 0 0.80975 1 59336 59336 0.79363 0 1 18867000 69080 14958 45994 47017 80644 80644 0.09427732948381617 VGGRQRGI 8 Unmodified _VGGRQRGI_ 0 0 0 REV__ENST00000557815.1_1_15:70350845-70351103:-|nuORF REV__ENST00000557815.1_1_15:70350845-70351103:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.7517700195312 2 421.751393 841.488233 0.077244 3.2578E-05 0.74288 0.00031331 0.82012 0.00034589 421.751538866531 77.215 0.42916 77.265 77.057 77.486 0.05011 36 17 3 0 0 0 0.80975 1 42578 42578 0.79363 0 1 4577200 + 69081 28794 45995 47018 80645 80645 0.06114873397245901 VGGSCTRQ 8 Unmodified _VGGSCTRQ_ 0 0 0 ENST00000511876.5_1_5:88185284-88199801:+|nuORF ENST00000511876.5_1_5:88185284-88199801:+|nuORF ENST00000511876.5_1_5:88185284-88199801:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1913757324219 2 404.192519 806.370486 NaN NaN NaN NaN NaN NaN NaN 20.037 1 20.037 19.537 20.537 0 0 0 0 0.97444 1 10062 10062 5.2307 0.90143 1 69082 14613 45996 47019 80646 80646 -0.0404444725375015 VGGSPEVRSL 10 Unmodified _VGGSPEVRSL_ 0 0 0 ENST00000415912.6_1_1:21545281-21545563:-|nuORF ENST00000415912.6_1_1:21545281-21545563:-|nuORF ENST00000415912.6_1_1:21545281-21545563:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.2499084472656 2 500.774731 999.534909 0.88221 0.00044179 3.0978 0.0015513 3.98 0.0019931 500.77579787980613 42.303 0.34097 37.619 37.423 37.764 -4.6846 32 21 2 0 0 0 0.23057 1 25453 25453 13.042 4.2971 1 10344000 69083 13030 45997 47020 80647 80647 0.03512268437862076 VGGSVEDL 8 Unmodified _VGGSVEDL_ 0 0 0 ENSG00000117984|ENST00000236671|CTSD ENSG00000117984|ENST00000236671|CTSD ENSG00000117984|ENST00000236671|CTSD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1968994140625 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 27.839 1 27.839 27.339 28.339 0 0 0 0 0.97348 1 14355 14355 5.7604 0.52976 1 69084 3345 45998 47021 80648 80648 -0.020264451902903602 VGGSVVPS 8 Unmodified _VGGSVVPS_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.1963500976562 2 351.195054 700.375555 NaN NaN NaN NaN NaN NaN NaN 33.361 1 33.202 32.702 33.702 -0.15918 0 0 0 0.97444 1 17399 17399 2.5775 0 1 69085 9633 45999 47022 80649 80649 0.013381798805312428 VGGTGTPF 8 Unmodified _VGGTGTPF_ 0 0 0 ENST00000353383.5_2_17:17713852-17714191:+|nuORF ENST00000353383.5_2_17:17713852-17714191:+|nuORF ENST00000353383.5_2_17:17713852-17714191:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8556823730469 2 368.187229 734.359904 NaN NaN NaN NaN NaN NaN NaN 22.865 1 22.865 22.365 23.365 0 0 0 0 0.97444 1 11640 11640 2.8892 0 1 69086 12054 46000 47023 80650 80650 -0.017901066365311635 VGGTLYLQGDK 11 Unmodified _VGGTLYLQGDK_ 0 0 0 REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF REV__ENST00000542044.5_1_11:118959775-118963990:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.8086547851562 2 575.808771 1149.60299 0.44475 0.00025609 -1.0293 -0.00059268 -0.58456 -0.00033659 575.8085299525258 75.394 0.29038 75.394 75.186 75.476 0 18 12 2 0 0 0 0.71341 1 41919 41919 2.9952 0 1 535490 + 69087 24551 46001 47024 80651 80651 0.034170932978668134 VGGVALPLS 9 Unmodified _VGGVALPLS_ 0 0 0 REV__nc|ENSG00000180481|Q4G1C9-3|GLIPR1L2 REV__nc|ENSG00000180481|Q4G1C9-3|GLIPR1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.48876953125 1 812.48763 811.480354 -0.45503 -0.00036971 0.37205 0.00030228 -0.082986 -6.7425E-05 812.4879001025851 56.179 0.36855 56.179 55.953 56.322 0 34 17 3 0 0 0 0.078417 2 31160 31160;31249 38.151 0 1 7529800 + 69088 23153 46002 47025 80652;80653 80652 0.06707301357084816 VGGVRNEVI 9 Unmodified _VGGVRNEVI_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.7725219726562 2 471.771991 941.529429 -0.33161 -0.00015645 0.67775 0.00031974 0.34614 0.0001633 471.7722927929495 31.569 0.18764 31.599 31.544 31.732 0.030104 11 8 2 0 0 0 0.32871 1 16592 16592 15.847 0 1 1124600 + 69089 22380 46003 47026 80654 80654 0.05632589646052111 VGGVRNEVI 9 Unmodified _VGGVRNEVI_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.771991 941.529429 -0.19541 -9.2187E-05 1.1162 0.00052661 0.92083 0.00043442 471.7724982575248 31.818 0.28259 31.818 31.7 31.983 0 0.13073 0.00023374 NaN 15.847 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1216700 + 69090 22380 46003 47026 0.05632589646052111 VGGVRNEVI 9 Unmodified _VGGVRNEVI_ 0 0 0 REV__ENSG00000169154|ENST00000307599|GOT1L1 REV__ENSG00000169154|ENST00000307599|GOT1L1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 471.771991 941.529429 -0.33161 -0.00015645 0.67775 0.00031974 0.34614 0.0001633 471.7722927929495 31.569 0.18764 31.599 31.544 31.732 0.030104 -0.088831 -0.00017999 NaN 15.847 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1124600 + 69091 22380 46003 47026 0.05632589646052111 VGGVTGII 8 Unmodified _VGGVTGII_ 0 0 0 nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C;nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C nc|ENSG00000129003|Q709C8-4|VPS13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2221374511719 2 358.221072 714.42759 1.8563 0.00066497 1.8406 0.00065932 3.6969 0.0013243 358.2219410167442 35.995 0.81897 31.802 31.218 32.037 -4.1928 62 50 2 0 0 0 0.72953 1 20967 20967 14.582 0 1 7411300 69092 4107 46004 47027 80655 80655 0.0589534329427579 VGGWELPR 8 Unmodified _VGGWELPR_ 0 0 0 ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2484130859375 2 457.248152 912.481751 -0.1811 -8.2806E-05 -0.1258 -5.7522E-05 -0.3069 -0.00014033 457.24800603462575 27.065 0.24404 27.065 26.952 27.196 0 33 11 4 0 0 0 0.55032 1 13913 13913 30.225 3.8835 1 17222000 69093 15628 46005 47028 80656 80656 0.02200935445853247 VGGWELPR 8 Unmodified _VGGWELPR_ 0 0 0 ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF ENST00000586922.2_1_18:32864420-32870144:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2486572265625 2 457.248152 912.481751 1.174 0.00053681 -0.19336 -8.8414E-05 0.98065 0.0004484 457.2480111344133 30.653 0.49802 27.156 26.915 27.413 -3.497 73 23 4 0 0 0 0.55032 1 17460 17460 30.225 5.5509 1 479390000 69094 15628 46005 47028 80657 80657 0.02200935445853247 VGGWGEEL 8 Unmodified _VGGWGEEL_ 0 0 0 REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42 REV__nc|ENSG00000188060|Q8N4Z0-1|RAB42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7035827636719 2 423.703243 845.391933 NaN NaN NaN NaN NaN NaN NaN 27.832 1 27.832 27.332 28.332 0 0 0 0 0.85111 1 14351 14351 20.871 1.4322 1 + 69095 23686 46006 47029 80658 80658 -0.03694738953390697 VGGYDGQN 8 Unmodified _VGGYDGQN_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1743774414062 2 405.17485 808.335146 NaN NaN NaN NaN NaN NaN NaN 14.593 1 14.593 14.093 15.093 0 0 0 0 0.97444 1 6950 6950 0.79363 0 1 69096 3064 46007 47030 80659 80659 -0.07668786509896108 VGGYDSDG 8 Unmodified _VGGYDSDG_ 0 0 0 REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.1529235839844 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 50.336 1 50.336 49.836 50.836 0 0 0 0 0.97444 1 27744 27744 0.79363 0 1 + 69097 22411 46008 47031 80660 80660 -0.1008018163813631 VGGYDSDG 8 Unmodified _VGGYDSDG_ 0 0 0 REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.1520690917969 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 39.584 1 39.287 38.787 39.787 -0.29716 0 0 0 0.97444 1 20884 20884 0.79363 0 1 + 69098 22411 46008 47031 80661 80661 -0.1008018163813631 VGGYDSDG 8 Unmodified _VGGYDSDG_ 0 0 0 REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.1529846191406 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 22.403 1 22.421 21.921 22.921 0.01749 0 0 0 0.97444 1 11505 11505 0.79363 0 1 + 69099 22411 46008 47031 80662 80662 -0.1008018163813631 VGGYDSDG 8 Unmodified _VGGYDSDG_ 0 0 0 REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.15380859375 2 385.153583 768.292613 NaN NaN NaN NaN NaN NaN NaN 14.333 1 11.83 11.33 12.33 -2.5029 0 0 0 0.97444 1 7274 7274 0.79363 0 1 + 69100 22411 46008 47031 80663 80663 -0.1008018163813631 VGHARVGQ 8 Unmodified _VGHARVGQ_ 0 0 0 REV__nc|ENSG00000059145|Q9H9P5-6|UNKL REV__nc|ENSG00000059145|Q9H9P5-6|UNKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2306823730469 2 412.230294 822.446034 -0.54673 -0.00022538 1.0037 0.00041374 0.45692 0.00018836 412.23060775086356 18.72 0.15658 18.744 18.645 18.801 0.023106 48 23 3 0 0 0 0.80975 1 9369 9369 0.79363 0 1 1930500 + 69101 29495 46009 47032 80664 80664 0.027708979888643626 VGHCGPMPDY 10 Unmodified _VGHCGPMPDY_ 0 0 0 REV__nc|ENSG00000155719|Q7RTW8-3|OTOA REV__nc|ENSG00000155719|Q7RTW8-3|OTOA MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.4843139648438 3 359.149372 1074.42629 1.5907 0.00057128 -1.1709 -0.00042055 0.4197 0.00015074 359.48321577483125 54.858 0.36659 48.992 48.819 49.186 -5.8653 35 22 2 0 0 0 0.69064 1 34875 34875 1.9064 0.1641 1 22681000 + 69102 21282 46010 47033 80665 80665 -0.10794982128436459 VGHEGKGSI 9 Unmodified _VGHEGKGSI_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC;ENST00000473805.5_1_1:52281970-52293513:-|nuORF ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2353820800781 2 442.235242 882.45593 -0.1074 -4.7495E-05 0.29615 0.00013097 0.18875 8.3471E-05 442.23527588428067 23.603 0.24507 23.603 23.489 23.735 0 22 12 2 0 0 0 0.07916 1 12016 12016 37.974 1.9298 1 1979800 69103 1247 46011 47034 80666 80666 0.010000412035765294 VGHEVQIKRL 10 Unmodified _VGHEVQIKRL_ 0 0 0 REV__ENSG00000133056|ENST00000684373|PIK3C2B REV__ENSG00000133056|ENST00000684373|PIK3C2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5730895996094 3 393.571657 1177.69314 1.0404 0.00040948 0.82123 0.00032321 1.8617 0.00073269 393.90632817231597 22.159 0.24952 19.425 19.256 19.505 -2.7348 26 13 3 0 0 0 0.69385 1 11882 11882 3.5871 0.95582 1 2722600 + 69104 19902 46012 47035 80667 80667 0.11140187416958724 VGHFNFLFYFA 11 Unmodified _VGHFNFLFYFA_ 0 0 0 REV__ENST00000227756.4_1_11:11292512-11292662:-|nuORF REV__ENST00000227756.4_1_11:11292512-11292662:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.5606994628906 3 454.560758 1360.66044 NaN NaN NaN NaN NaN NaN NaN 15.106 1 15.106 14.606 15.606 0 0 0 0 0.94301 1 7247 7247 0.094841 0 1 + 69105 24797 46013 47036 80668 80668 -0.005460197059164784 VGHFQDFI 8 Unmodified _VGHFQDFI_ 0 0 0 REV__ENST00000532859.1_1_11:43755320-43755701:+|nuORF REV__ENST00000532859.1_1_11:43755320-43755701:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7393188476562 2 481.74016 961.465767 NaN NaN NaN NaN NaN NaN NaN 68.683 1 68.683 68.183 69.183 0 0 0 0 0.97444 1 38280 38280 2.8892 0 1 + 69106 28471 46014 47037 80669 80669 -0.01650770791047762 VGHFQDFI 8 Unmodified _VGHFQDFI_ 0 0 0 REV__ENST00000532859.1_1_11:43755320-43755701:+|nuORF REV__ENST00000532859.1_1_11:43755320-43755701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7412109375 2 481.74016 961.465767 0.23068 0.00011113 0.20998 0.00010115 0.44066 0.00021228 481.740260243851 69.155 0.343 68.675 68.465 68.808 -0.48071 33 14 3 0 0 0 0.76859 2 37764 37764;37866 11.114 0.93107 1 2006600 + 69107 28471 46014 47037 80670;80671 80670 -0.01650770791047762 VGHFVHFNV 9 Unmodified _VGHFVHFNV_ 0 0 0 REV__ENSG00000188822|ENST00000374472|CNR2 REV__ENSG00000188822|ENST00000374472|CNR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5192260742188 3 352.518893 1054.53485 NaN NaN NaN NaN NaN NaN NaN 15.726 1 15.732 15.232 16.232 0.0057774 0 0 0 0.85737 1 7851 7851 0.26902 0 1 + 69108 23735 46015 47038 80672 80672 0.009763132285115717 VGHFYRQI 8 Unmodified _VGHFYRQI_ 0 0 0 REV__ENST00000332132.8_1_X:55172668-55187609:-|nuORF REV__ENST00000332132.8_1_X:55172668-55187609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2747802734375 2 510.274701 1018.53485 0.34152 0.00017427 -0.56375 -0.00028767 -0.22223 -0.0001134 510.27445280174845 63.508 0.22095 63.508 63.464 63.685 0 17 10 2 0 0 0 0.72953 1 35422 35422 14.582 1.0738 1 1317200 + 69109 25607 46016 47039 80673 80673 0.026323132285028805 VGHGESLAQLA 11 Unmodified _VGHGESLAQLA_ 0 0 0 REV__ENSG00000140396|ENST00000452400|NCOA2 REV__ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.1929626464844 3 361.192734 1080.55637 -0.59458 -0.00021476 0.79198 0.00028606 0.1974 7.13E-05 361.1930756662869 15.364 0.20714 15.364 15.254 15.461 0 116 48 3 0 0 0 0.67922 1 7385 7385 2.8433 0 1 2076700 + 69110 20467 46017 47040 80674 80674 0.019316534665676954 VGHGLAKTFGP 11 Unmodified _VGHGLAKTFGP_ 0 0 0 REV__nc|ENSG00000095303|P23219-4|PTGS1 REV__nc|ENSG00000095303|P23219-4|PTGS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.8702392578125 3 361.869703 1082.58728 NaN NaN NaN NaN NaN NaN NaN 34.331 1 34.14 33.64 34.64 -0.19131 0 0 0 0.94144 1 17926 17926 0.50596 0 1 + 69111 17938 46018 47041 80675 80675 0.049288515714806636 VGHGLPEI 8 Unmodified _VGHGLPEI_ 0 0 0 ENST00000546876.1_1_12:114395740-114397707:-|nuORF ENST00000546876.1_1_12:114395740-114397707:-|nuORF ENST00000546876.1_1_12:114395740-114397707:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.2297668457031 2 411.229428 820.444303 NaN NaN NaN NaN NaN NaN NaN 40.89 1 36.282 35.782 36.782 -4.6079 0 0 0 0.70013 1 24475 24475 28.173 5.7206 1 69112 15113 46019 47042 80676 80676 0.026898441802245543 VGHHASSI 8 Unmodified _VGHHASSI_ 0 0 0 ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-8|SEPTIN4 ENSG00000108387|ENST00000672673|SEPTIN4 ENSG00000108387|ENST00000672673|SEPTIN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2098693847656 2 404.209027 806.403501 NaN NaN NaN NaN NaN NaN NaN 17.623 1 17.628 17.128 18.128 0.0050564 0 0 0 0.97444 1 8898 8898 2.5775 0.27475 1 69113 2563 46020 47043 80677 80677 -0.007444971393738342 VGHHCLGP 8 Unmodified _VGHHCLGP_ 0 0 0 REV__ENST00000268766.10_1_17:27069087-27069354:+|nuORF REV__ENST00000268766.10_1_17:27069087-27069354:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2000427246094 2 410.200148 818.385742 NaN NaN NaN NaN NaN NaN NaN 17.04 1 17.045 16.545 17.545 0.0050564 0 0 0 0.97444 1 8576 8576 0.79363 0 1 + 69114 25117 46021 47044 80678 80678 -0.03071535665878855 VGHHRAAVHL 10 Unmodified _VGHHRAAVHL_ 0 0 0 ENST00000573519.5_1_17:79526287-79532556:-|nuORF ENST00000573519.5_1_17:79526287-79532556:-|nuORF ENST00000573519.5_1_17:79526287-79532556:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2803344726562 2 548.809774 1095.60499 0.42871 0.00023528 2.9311 0.0016086 3.3598 0.0018439 548.8100424912042 52.093 0.2391 51.659 51.55 51.789 -0.43367 19 11 2 0 0 0 0.23117 1 28110 28110 7.2892 0 1 2740700 69115 15500 46022 47045 80679 80679 0.06101611616986702 VGHHWPCRVIS 11 Unmodified _VGHHWPCRVIS_ 0 0 0 REV__ENST00000415794.1_1_3:139212742-139212994:+|nuORF REV__ENST00000415794.1_1_3:139212742-139212994:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8885498046875 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 17.9 1 15.313 14.813 15.813 -2.5866 0 0 0 0.94144 1 9397 9397 0.50596 0.051438 1 + 69116 26758 46023 47046 80680 80680 0.011907902252232816 VGHILGNKPEF 11 Unmodified _VGHILGNKPEF_ 0 0 0 REV__ENSG00000008083|ENST00000341776|JARID2 REV__ENSG00000008083|ENST00000341776|JARID2 MSMS AL20221201_MKP_PDAC_01 4 404.2256164550781 3 404.224146 1209.65061 NaN NaN NaN NaN NaN NaN NaN 3.6623 1 1.1803 0.68032 1.6803 -2.482 0 0 0 0.93893 1 1859 1859 1.3296 0 1 + 69117 17017 46024 47047 80681 80681 0.054167922887017994 VGHKGGKP 8 Unmodified _VGHKGGKP_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2293701171875 2 390.229762 778.444972 NaN NaN NaN NaN NaN NaN NaN 17.373 1 17.387 16.887 17.887 0.013865 0 0 0 0.97444 1 8634 8634 0.79363 0.79363 1 69118 3826 46025 47048 80682 80682 0.04688683619940548 VGHLGPLQHL 10 Unmodified _VGHLGPLQHL_ 0 0 0 REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF REV__ENST00000470335.1_1_22:20838156-20850080:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.8070678710938 2 535.808908 1069.60326 NaN NaN NaN NaN NaN NaN NaN 17.996 1 15.409 14.909 15.909 -2.5866 0 0 0 0.96981 1 9454 9454 3.9444 1.6417 1 + 69119 27477 46026 47049 80683 80683 0.07124557808378995 VGHLLKEKY 9 Unmodified _VGHLLKEKY_ 0 0 0 ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B ENSG00000188064|ENST00000339464|WNT7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8187866210938 2 543.818941 1085.62333 0.10143 5.5159E-05 0.88508 0.00048132 0.98651 0.00053648 543.8188686019405 19.362 0.095325 19.37 19.28 19.376 0.0078487 6 4 2 0 0 0 0.58865 1 9841 9841 2.0598 0.21551 1 490360 69120 9625 46027 47050 80684 80684 0.08394308748324875 VGHLSFSEI 9 Unmodified _VGHLSFSEI_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MSMS AL20221201_MKP_PDAC_01 4 494.7591552734375 2 494.758549 987.502546 NaN NaN NaN NaN NaN NaN NaN 11.991 1 9.5094 9.0094 10.009 -2.482 0 0 0 0.84564 1 6043 6043 2.0598 0 1 69121 998 46028 47051 80685 80685 0.00829481034861601 VGHLSFSEIL 10 Unmodified _VGHLSFSEIL_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.869873046875 3 367.86948 1100.58661 0.086442 3.1799E-05 0.40104 0.00014753 0.48748 0.00017933 367.8695373210736 45.669 0.27586 45.669 45.527 45.803 0 33 13 3 0 0 0 0.42068 1 24871 24871 12.873 0 1 20400000 69122 998 46029 47052 80686 80686 0.04034012131774034 VGHLSFSEIL 10 Unmodified _VGHLSFSEIL_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;nc|ENSG00000069188|Q58EX2-2|SDK2;nc|ENSG00000069188|Q58EX2-4|SDK2;ENST00000479356.1_1_17:71354047-71433905:-|nuORF nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8694458007812 3 367.86948 1100.58661 0.11495 4.2288E-05 -0.30261 -0.00011132 -0.18765 -6.9032E-05 367.869272848326 45.902 0.1656 45.578 45.494 45.659 -0.32425 15 8 2 0 0 0 0.19662 1 24529 24529 28.495 0 1 10868000 69123 998 46029 47052 80687 80687 0.04034012131774034 VGHLVSHG 8 Unmodified _VGHLVSHG_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|2|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.2198791503906 2 403.219395 804.424236 -0.37593 -0.00015158 1.6558 0.00066767 1.2799 0.00051608 403.2199221211833 30.876 0.50369 30.876 30.67 31.174 0 41 24 2 0 0 0 0.80975 1 16013 16013 0.79363 0 1 2083700 69124 9341 46030 47053 80688 80688 0.014200932402900435 VGHLVSHG 8 Unmodified _VGHLVSHG_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|2|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 403.219395 804.424236 -0.37593 -0.00015158 1.6558 0.00066767 1.2799 0.00051608 403.2199221211833 30.876 0.50369 30.876 30.67 31.174 0 0.062373 -0.00029335 NaN 0.79363 41 24 2 NaN NaN NaN NaN 0 NaN NaN 0 2083700 69125 9341 46030 47053 0.014200932402900435 VGHLVSHG 8 Unmodified _VGHLVSHG_ 0 0 0 ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|2|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|1|intron MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 403.219395 804.424236 -0.31971 -0.00012891 2.2363 0.0009017 1.9165 0.00077279 403.2200187537854 30.721 0.60253 30.752 30.434 31.037 0.030106 -0.062373 0.00017472 NaN 0.79363 61 26 3 NaN NaN NaN NaN 0 NaN NaN 0 4502600 69126 9341 46030 47053 0.014200932402900435 VGHMFSIAEI 10 Unmodified _VGHMFSIAEI_ 0 0 0 nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 nc|ENSG00000162843|B1ANS9-2|WDR64 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5251159667969 3 368.523315 1102.54812 NaN NaN NaN NaN NaN NaN NaN 16.082 1 16.082 15.582 16.582 0 0 0 0 0.99091 1 7810 7810 0.69767 0 1 69127 6920 46031 47054 80689 80689 0.0009438322558708023 VGHNHTYNMAP 11 Unmodified _VGHNHTYNMAP_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.5623779296875 2 620.780022 1239.54549 NaN NaN NaN NaN NaN NaN NaN 58.588 1 58.527 58.027 59.027 -0.060719 0 0 0 0.76159 1 31916 31916 13.906 3.0821 1 69128 1350 46032 47055 80690 80690 -0.06470072179376984 VGHNWNRRL 9 Unmodified _VGHNWNRRL_ 0 0 0 REV__ENST00000435469.2_1_17:66099122-66110581:+|nuORF REV__ENST00000435469.2_1_17:66099122-66110581:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5439758300781 3 384.544212 1150.61081 -0.4164 -0.00016013 -1.4646 -0.0005632 -1.881 -0.00072333 384.54345895509 21.427 0.1678 21.427 21.341 21.509 0 36 22 2 0 0 0 0.58466 1 10804 10804 1.1933 0 1 2815700 + 69129 27019 46033 47056 80691 80691 0.041527101286419565 VGHPAPPI 8 Unmodified _VGHPAPPI_ 0 0 0 REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF REV__ENST00000445535.1_1_1:161576981-161578004:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2274475097656 2 394.226688 786.438824 1.6698 0.00065828 -0.98132 -0.00038686 0.68849 0.00027142 394.22639421681055 47.483 0.42445 42.249 42.072 42.496 -5.2339 45 24 3 0 0 0 0.76859 1 29459 29459 11.114 0 1 18206000 + 69130 27133 46034 47057 80692 80692 0.03706165388427962 VGHPQMSF 8 Unmodified _VGHPQMSF_ 0 0 0 REV__nc|ENSG00000089472|Q9BQS7-4|HEPH REV__nc|ENSG00000089472|Q9BQS7-4|HEPH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.7142639160156 2 451.713088 901.411622 NaN NaN NaN NaN NaN NaN NaN 30.294 1 30.214 29.714 30.714 -0.080429 0 0 0 0.97444 1 15717 15717 2.5775 0.27475 1 + 69131 17841 46035 47058 80693 80693 -0.04302686214271034 VGHPWWFIF 9 Unmodified _VGHPWWFIF_ 0 0 0 REV__ENSG00000213088|ENST00000368122|ACKR1 REV__ENSG00000213088|ENST00000368122|ACKR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8697204589844 3 396.871155 1187.59164 NaN NaN NaN NaN NaN NaN NaN 19.198 1 19.221 18.721 19.721 0.023106 0 0 0 0.85737 1 9667 9667 0.26902 0.1097 1 + 69132 24273 46036 47059 80694 80694 0.005343607850136323 VGHPWWFIF 9 Unmodified _VGHPWWFIF_ 0 0 0 REV__ENSG00000213088|ENST00000368122|ACKR1 REV__ENSG00000213088|ENST00000368122|ACKR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8730163574219 3 396.871155 1187.59164 NaN NaN NaN NaN NaN NaN NaN 37.89 1 37.907 37.407 38.407 0.01704 0 0 0 0.82015 1 20132 20132 2.9952 0.26005 1 + 69133 24273 46036 47059 80695 80695 0.005343607850136323 VGHPYTSAP 9 Unmodified _VGHPYTSAP_ 0 0 0 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7297668457031 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 27.88 1 27.91 27.41 28.41 0.029564 0 0 0 0.3092 1 14502 14502 24.674 0 1 + 69134 19677 46037 47060 80696 80696 -0.02159361170720331 VGHPYTSAP 9 Unmodified _VGHPYTSAP_ 0 0 0 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.7290954589844 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 53.631 1 53.568 53.068 54.068 -0.063423 0 0 0 0.043758 1 29100 29100 60.39 4.2125 1 + 69135 19677 46037 47060 80697 80697 -0.02159361170720331 VGHPYTSAP 9 Unmodified _VGHPYTSAP_ 0 0 0 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 MSMS AL20221201_MKP_PDAC_01 4 464.7313842773438 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 59.75 1 53.635 53.135 54.135 -6.1147 0 0 0 0.071041 1 38392 38392 50.855 0 1 + 69136 19677 46037 47060 80698 80698 -0.02159361170720331 VGHQAFHR 8 Unmodified _VGHQAFHR_ 0 0 0 ENSG00000267680|ENST00000693561|ZNF224 ENSG00000267680|ENST00000693561|ZNF224 ENSG00000267680|ENST00000693561|ZNF224 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2494201660156 2 476.249018 950.483482 NaN NaN NaN NaN NaN NaN NaN 31.686 1 31.557 31.057 32.057 -0.12915 0 0 0 0.97444 1 16482 16482 0.79363 0 1 69137 10868 46038 47061 80699 80699 0.006259892544562717 VGHQEMRED 9 Unmodified _VGHQEMRED_ 0 0 0 nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 nc|ENSG00000101353|Q9H579-2|MROH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4991760253906 3 367.497829 1099.47166 NaN NaN NaN NaN NaN NaN NaN 24.68 1 24.68 24.18 25.18 0 0 0 0 0.82739 1 12622 12622 2.4985 0 1 69138 1954 46039 47062 80700 80700 -0.07410040341687818 VGHRFLHY 8 Unmodified _VGHRFLHY_ 0 0 0 REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 REV__nc|ENSG00000104970|Q9H7L2|KIR3DX1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.712890625 2 514.774868 1027.53518 1.096 0.00056421 -0.82096 -0.00042261 0.27508 0.00014161 514.7744528216062 20.778 0.30318 18.085 17.941 18.244 -2.693 29 19 2 0 0 0 8.7369 1 11028 11028 9.3474 0 1 2838900 + 69139 29546 46040 47063 80701 80701 0.022517329483889625 VGHRPVWDK 9 Unmodified _VGHRPVWDK_ 0 0 0 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant;ENST00000554111.1_1_14:100376608-100381157:+|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.9383544921875 2 547.298707 1092.58286 NaN NaN NaN NaN NaN NaN NaN 19.45 1 19.457 18.957 19.957 0.0078487 0 0 0 0.84564 1 9893 9893 2.0598 0.40713 1 69140 246 46041 47064 80702 80702 0.04027387148539674 VGHRPVWDK 9 Unmodified _VGHRPVWDK_ 0 0 0 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant;ENST00000554111.1_1_14:100376608-100381157:+|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2994995117188 2 547.298707 1092.58286 NaN NaN NaN NaN NaN NaN NaN 19.463 1 19.47 18.97 19.97 0.0078487 0 0 0 0.84737 1 9900 9900 1.8442 0.36234 1 69141 246 46041 47064 80703 80703 0.04027387148539674 VGHRPVWDK 9 Unmodified _VGHRPVWDK_ 0 0 0 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant;ENST00000554111.1_1_14:100376608-100381157:+|nuORF;ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1 EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant EML1|p.A572T|1|0.19|ENSG00000066629|chr14:99914659-99914659|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 547.2991333007812 2 547.298707 1092.58286 NaN NaN NaN NaN NaN NaN NaN 21.48 1 18.746 18.246 19.246 -2.7348 0 0 0 0.84369 1 11511 11511 2.3027 0 1 69142 246 46041 47064 80704 80704 0.04027387148539674 VGHRTSLP 8 Unmodified _VGHRTSLP_ 0 0 0 REV__ENST00000452600.1_1_2:130988892-130989183:+|nuORF REV__ENST00000452600.1_1_2:130988892-130989183:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 433.2537231445312 2 433.745776 865.477 1.2436 0.00053939 -0.6681 -0.00028978 0.57547 0.00024961 433.7453834694608 20.165 0.33109 17.508 17.351 17.682 -2.6564 36 23 2 0 0 0 8.7369 1 10694 10694 34.102 1.797 1 7091300 + 69143 27220 46042 47065 80705 80705 0.038880513030903785 VGHRTVYLF 9 Unmodified _VGHRTVYLF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7564697265625 2 546.303458 1090.59236 0.74822 0.00040875 -1.8705 -0.0010219 -1.1223 -0.0006131 546.3021285835127 66.821 0.20602 66.839 66.733 66.939 0.018036 15 9 2 0 0 0 0.19613 1 36662 36662 12.532 0 1 2387900 69144 1980 46043 47066 80706 80706 0.050691554340801304 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1878662109375 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 84.306 1 83.806 83.306 84.306 -0.49961 0 0 0 0.97444 1 46136 46136 0.69038 0 1 69145 8687 46044 47067 80707 80707 -0.02813052827912088 VGHSAGHP 8 Unmodified _VGHSAGHP_ 0 0 0 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 ENSG00000177468|ENST00000367734|OLIG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1499938964844 2 381.188094 760.361636 NaN NaN NaN NaN NaN NaN NaN 94.221 1 93.801 93.301 94.301 -0.42044 0 0 0 0.97444 1 51480 51480 0.69038 0 1 69146 8687 46044 47067 80708 80708 -0.02813052827912088 VGHSERRF 8 Unmodified _VGHSERRF_ 0 0 0 REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF REV__ENST00000205386.8_1_7:107703372-107706232:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2611389160156 2 494.259582 986.504612 NaN NaN NaN NaN NaN NaN NaN 76.16 1 76.16 75.66 76.66 0 0 0 0 0.97444 1 42352 42352 2.8892 0 1 + 69147 24725 46045 47068 80709 80709 0.010819545633239613 VGHSLPPSAV 10 Unmodified _VGHSLPPSAV_ 0 0 0 ENSG00000112246|ENST00000369208|SIM1 ENSG00000112246|ENST00000369208|SIM1 ENSG00000112246|ENST00000369208|SIM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7305603027344 2 482.266542 962.51853 0.57626 0.00027791 -0.4345 -0.00020955 0.14176 6.8364E-05 482.26694486586973 40.306 0.13067 40.009 39.963 40.094 -0.29716 10 5 2 0 0 0 0.22149 1 21310 21310 20.454 1.1966 1 726520 69148 2873 46046 47069 80710 80710 0.03577187271753246 VGHSPALSVF 10 Unmodified _VGHSPALSVF_ 0 0 0 REV__ENST00000602550.5_1_6:30293934-30294096:-|nuORF REV__ENST00000602550.5_1_6:30293934-30294096:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2745666503906 2 507.274367 1012.53418 0.45549 0.00023106 0.012575 6.3787E-06 0.46807 0.00023744 507.27435554345146 39.442 0.28882 39.453 39.303 39.592 0.011452 39 13 4 0 0 0 0.31022 1 20992 20992 26.884 1.4843 1 9855200 + 69149 29264 46047 47070 80711 80711 0.028414737887942465 VGHSTDAREMS 11 Unmodified _VGHSTDAREMS_ 0 0 0 nc|ENSG00000166347|P00167-2|CYB5A;ENST00000583418.1_1_18:71928104-71959110:-|nuORF;nc|ENSG00000166347|P00167-3|CYB5A;ENSG00000166347|ENST00000340533|CYB5A nc|ENSG00000166347|P00167-2|CYB5A nc|ENSG00000166347|P00167-2|CYB5A MSMS AL20221201_MKP_PDAC_01 4 595.2661743164062 2 595.266944 1188.51934 NaN NaN NaN NaN NaN NaN NaN 56.063 1 50.142 49.642 50.642 -5.9211 0 0 0 0.48869 1 35743 35743 24.991 0 1 69150 7476 46048 47071 80712 80712 -0.06738386141500996 VGHTFEGCAMF 11 Unmodified _VGHTFEGCAMF_ 0 0 0 ENST00000368885.7_1_6:111208713-111208767:+|nuORF ENST00000368885.7_1_6:111208713-111208767:+|nuORF ENST00000368885.7_1_6:111208713-111208767:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 600.2908325195312 2 599.754627 1197.4947 0.010319 6.1886E-06 2.165 0.0012985 2.1753 0.0013047 599.7548498878502 43.784 0.39903 39.019 38.772 39.171 -4.7648 45 24 2 0 0 0 0.28752 1 26580 26580 9.3831 2.0939 1 10741000 69151 12285 46049 47072 80713 80713 -0.09614737548599805 VGHTTGITLS 10 Unmodified _VGHTTGITLS_ 0 0 0 REV__nc|ENSG00000254685|O14772|FPGT REV__nc|ENSG00000254685|O14772|FPGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7694396972656 2 493.269281 984.52401 0.45862 0.00022622 -1.0783 -0.00053187 -0.61964 -0.00030565 493.26910681770505 45.03 0.63651 40.178 39.841 40.478 -4.852 105 43 3 0 0 0 0.42068 1 27532 27532 20.454 1.1966 1 76108000 + 69152 24527 46050 47073 80714 80714 0.031128660635772576 VGHVGTPL 8 Unmodified _VGHVGTPL_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.2242736816406 2 390.224146 778.433738 1.4334 0.00055937 -1.2447 -0.00048571 0.18876 7.3657E-05 390.2236878158194 55.492 0.43353 49.571 49.366 49.8 -5.9211 40 26 2 0 0 0 0.5953 2 35278 35278;35410 26.341 6.9023 1 17772000 69153 5100 46051 47074 80715;80716 80715 0.03565861525805758 VGHVHHGPLR 10 Unmodified _VGHVHHGPLR_ 0 0 0 REV__ENST00000476095.5_1_3:47048649-47049645:+|nuORF REV__ENST00000476095.5_1_3:47048649-47049645:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8096313476562 2 554.809774 1107.60499 0.71862 0.0003987 -1.4535 -0.00080642 -0.73488 -0.00040772 554.8089620955651 30.62 0.17507 30.517 30.419 30.594 -0.10269 9 6 2 0 0 0 0.62068 1 15903 15903 10.074 0 1 798540 + 69154 27588 46052 47075 80717 80717 0.05549611616970651 VGHVVRFG 8 Unmodified _VGHVVRFG_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7515563964844 2 435.750862 869.487171 1.4034 0.00061152 0.81898 0.00035687 2.2223 0.00096839 435.75110647403204 49.918 0.38419 49.869 49.743 50.127 -0.048828 24 18 2 0 0 0 0.80624 1 27089 27089 2.8892 0 1 814240 69155 7069 46053 47076 80718 80718 0.047206590283281 VGHWNLSTGVL 11 Unmodified _VGHWNLSTGVL_ 0 0 0 nc|ENSG00000189195|Q5XKL5|BTBD8;nc|ENSG00000189195|Q5XKL5-4|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 nc|ENSG00000189195|Q5XKL5|BTBD8 MSMS AL20221201_MKP_PDAC_01 4 394.8798217773438 3 394.880379 1181.61931 NaN NaN NaN NaN NaN NaN NaN 14.633 1 12.13 11.63 12.63 -2.5029 0 0 0 0.94144 1 7446 7446 0.50596 0 1 69156 16469 46054 47077 80719 80719 0.03576219254637181 VGHWTCNWPK 10 Unmodified _VGHWTCNWPK_ 0 0 0 REV__ENST00000373225.7_1_9:130566633-130566799:+|nuORF REV__ENST00000373225.7_1_9:130566633-130566799:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8641662597656 3 409.862442 1226.5655 NaN NaN NaN NaN NaN NaN NaN 15.214 1 15.214 14.714 15.714 0 0 0 0 1.0019 1 7308 7308 0.15932 0.01943 1 + 69157 26138 46055 47078 80720 80720 -0.03872276448782941 VGHYQIDMD 9 Unmodified _VGHYQIDMD_ 0 0 0 REV__ENSG00000188716|ENST00000338487|DUSP29 REV__ENSG00000188716|ENST00000338487|DUSP29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8291931152344 3 359.827175 1076.45969 1.2261 0.00044118 2.6981 0.00097086 3.9242 0.001412 359.827946407822 33.068 0.34909 29.212 29.044 29.393 -3.8562 26 22 2 0 0 0 0.58466 1 18905 18905 1.1933 0 1 27686000 + 69158 23724 46056 47079 80721 80721 -0.07547657084865023 VGHYRRGQ 8 Unmodified _VGHYRRGQ_ 0 0 0 REV__nc|ENSG00000159899|P20594-2|NPR2 REV__nc|ENSG00000159899|P20594-2|NPR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7599487304688 2 486.759749 971.504946 NaN NaN NaN NaN NaN NaN NaN 14.626 1 14.595 14.095 15.095 -0.030868 0 0 0 0.97444 1 7129 7129 0.79363 0 1 + 69159 21505 46057 47080 80722 80722 0.018053742831853015 VGIAFVVMWK 10 Unmodified _VGIAFVVMWK_ 0 0 0 REV__nc|ENSG00000011021|P51797-5|CLCN6 REV__nc|ENSG00000011021|P51797-5|CLCN6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8870849609375 3 383.887817 1148.64162 NaN NaN NaN NaN NaN NaN NaN 16.605 1 16.61 16.11 17.11 0.0050564 0 0 0 0.99897 1 8334 8334 0.77653 0 1 + 69160 29483 46058 47081 80723 80723 0.07324727398668074 VGICLRKV 8 Unmodified _VGICLRKV_ 0 0 0 ENST00000310045.7_1_18:65182719-65183692:-|nuORF ENST00000310045.7_1_18:65182719-65183692:-|nuORF ENST00000310045.7_1_18:65182719-65183692:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 444.2223205566406 2 444.278398 886.542243 NaN NaN NaN NaN NaN NaN NaN 75.034 1 68.858 68.358 69.358 -6.1757 0 0 0 0.97444 1 49064 49064 2.8892 0 1 69161 11674 46059 47082 80724 80724 0.09443329504574649 VGICTRAP 8 Unmodified _VGICTRAP_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7240295410156 2 408.723455 815.432358 0.89409 0.00036543 -0.25144 -0.00010277 0.64265 0.00026267 408.72368479027676 18.616 0.33343 15.994 15.824 16.158 -2.6215 65 34 3 0 0 0 0.75262 2 9854 9750;9854 12.532 1.7076 1 5086500 + 69162 17928 46060 47083 80725;80726 80726 0.017259041653801432 VGICVLFLYL 10 Unmodified _VGICVLFLYL_ 0 0 0 ENST00000273038.7_1_3:11599800-11599995:-|nuORF ENST00000273038.7_1_3:11599800-11599995:-|nuORF ENST00000273038.7_1_3:11599800-11599995:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5569458007812 3 380.555956 1138.64604 NaN NaN NaN NaN NaN NaN NaN 63.948 1 63.463 62.963 63.963 -0.48512 0 0 0 0.98914 1 34883 34883 0.77653 0.50751 1 69163 11376 46061 47084 80727 80727 0.08226191821586326 VGIDGEVLSY 10 Unmodified _VGIDGEVLSY_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1;ENST00000490827.1_1_10:62631931-62634780:-|nuORF ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2694702148438 2 526.268947 1050.52334 -0.18327 -9.6448E-05 0.89513 0.00047108 0.71187 0.00037463 526.2694052923349 28.785 0.36034 28.785 28.641 29.002 0 59 17 5 0 0 0 0.33553 1 14972 14972 25.399 6.1423 1 148680000 69164 1083 46062 47085 80728 80728 0.00010026623863268469 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 938.4830322265625 1 938.482939 937.475663 0.3102 0.00029112 -0.34559 -0.00032433 -0.035387 -3.321E-05 938.4824029490131 59.589 0.35333 59.589 59.4 59.754 0 43 15 4 0 0 0 0.012148 2 33251 33144;33251 74.423 21.323 1 16037000 69165 2688;8286;673 46063 47086 80729;80730 80730 0.00442372423674442 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 938.4821166992188 1 938.482939 937.475663 0.3515 0.00032988 -0.37284 -0.0003499 -0.021338 -2.0025E-05 938.4826122154777 67.931 0.49696 61.755 61.46 61.957 -6.1757 63 28 3 0 0 0 0.0083087 3 44265 44134;44265;44404 97.075 26.359 1 56609000 69166 2688;8286;673 46063 47086 80731;80732;80733 80732 0.00442372423674442 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7453918457031 2 469.745108 937.475663 0.52465 0.00024645 -0.6829 -0.00032079 -0.15825 -7.4336E-05 469.7451615790212 67.873 0.44456 61.697 61.48 61.924 -6.1757 44 25 2 0 0 0 0.12841 1 44332 44332 30.225 7.0764 1 35830000 69167 2688;8286;673 46063 47086 80734 80734 0.00442372423674442 VGIDLGTTY 9 Unmodified _VGIDLGTTY_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENSG00000044574|ENST00000324460|HSPA5 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 938.482939 937.475663 0.02836 2.6615E-05 0.57473 0.00053938 0.60309 0.00056599 938.483623526366 60.202 0.17905 59.711 59.607 59.786 -0.49079 0.061387 0.00069216 NaN 74.423 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2508600 69168 2688;8286;673 46063 47086 0.00442372423674442 VGIESGGF 8 Unmodified _VGIESGGF_ 0 0 0 ENST00000406687.5_1_2:54013870-54014047:-|nuORF REV__ENST00000326793.10_2_3:194999558-194999657:-|nuORF REV__ENST00000326793.10_2_3:194999558-194999657:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.1935729980469 2 383.192511 764.370469 NaN NaN NaN NaN NaN NaN NaN 13.364 1 10.882 10.382 11.382 -2.482 0 0 0 0.97444 1 6773 6773 2.8892 0 1 69169 12936 46064 47087 80735 80735 -0.021141239820849478 VGIFFFIC 8 Unmodified _VGIFFFIC_ 0 0 0 REV__ENST00000535149.5_1_X:70520897-70520960:+|nuORF REV__ENST00000535149.5_1_X:70520897-70520960:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2489929199219 2 473.248775 944.482997 NaN NaN NaN NaN NaN NaN NaN 17.207 1 17.207 16.707 17.707 0 0 0 0 0.97444 1 8458 8458 0.79363 0 1 + 69170 28516 46065 47088 80736 80736 0.008534334903856688 VGIFPKVFVE 10 Unmodified _VGIFPKVFVE_ 0 0 0 nc|ENSG00000116701|P19878-4|NCF2;nc|ENSG00000116701|P19878-3|NCF2;ENSG00000116701|ENST00000367535|NCF2 nc|ENSG00000116701|P19878-4|NCF2 nc|ENSG00000116701|P19878-4|NCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8902893066406 3 378.890104 1133.64848 0.64514 0.00024444 -1.0735 -0.00040674 -0.42837 -0.0001623 378.8897681299861 11.927 0.043942 9.445 9.4249 9.4688 -2.482 6 4 2 0 0 0 0.70895 1 6018 6018 1.9064 0 1 1555100 69171 3245 46066 47089 80737 80737 0.08700363550906332 VGIGKCLK 8 Unmodified _VGIGKCLK_ 0 0 0 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 817.4984130859375 1 817.496421 816.489145 0.97195 0.00079456 0.50378 0.00041184 1.4757 0.0012064 817.4968171479401 101.98 0.11885 95.804 95.735 95.854 -6.1757 8 5 2 0 0 0 0.61462 1 68441 68441 24.674 1.5255 1 3493900 69172 5818 46067 47090 80738 80738 0.0735595172191097 VGIGKCLK 8 Unmodified _VGIGKCLK_ 0 0 0 nc|ENSG00000147099|Q9BY41-4|HDAC8;ENSG00000147099|ENST00000373573|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 nc|ENSG00000147099|Q9BY41-4|HDAC8 MSMS AL20221201_MKP_PDAC_01 4 409.25341796875 2 409.251849 816.489145 NaN NaN NaN NaN NaN NaN NaN 107.39 1 101.22 100.72 101.72 -6.1757 0 0 0 0.97444 1 71832 71832 0.79363 0 1 69173 5818 46067 47090 80739 80739 0.0735595172191097 VGIGWIGM 8 Unmodified _VGIGWIGM_ 0 0 0 REV__nc|ENSG00000123178|Q5W111-2|SPRYD7 REV__nc|ENSG00000123178|Q5W111-2|SPRYD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.7235412597656 2 416.722924 831.431295 NaN NaN NaN NaN NaN NaN NaN 20.024 1 20.024 19.524 20.524 0 0 0 0 0.97444 1 10054 10054 0.79363 0 1 + 69174 29610 46068 47091 80740 80740 0.008836897964897616 VGIIDILIKES 11 Unmodified _VGIIDILIKES_ 0 0 0 REV__ENSG00000154122|ENST00000284268|ANKH REV__ENSG00000154122|ENST00000284268|ANKH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5803527832031 3 400.579706 1198.71729 -0.24881 -9.967E-05 1.8875 0.00075608 1.6387 0.00065641 400.58063548038666 37.646 0.32423 37.663 37.515 37.839 0.01704 31 15 3 0 0 0 0.69509 1 19957 19957 4.7159 0.30977 1 7172200 + 69175 21207 46069 47092 80741 80741 0.12587983059961516 VGILHKDFES 10 Unmodified _VGILHKDFES_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Q894Cfs*18|1|0.1|ENSG00000135837|chr1:180020453-180020459|TCAGAAG/-|frameshift_variant ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2049255371094 3 382.204751 1143.59242 NaN NaN NaN NaN NaN NaN NaN 15.677 1 15.677 15.177 16.177 0 0 0 0 0.99091 1 7574 7574 0.69767 0.42865 1 69176 4746 46070 47093 80742 80742 0.026371106434453395 VGILLLLLLA 10 Unmodified _VGILLLLLLA_ 0 0 0 REV__nc|ENSG00000145103|Q86SU0-2|ILDR1 REV__nc|ENSG00000145103|Q86SU0-2|ILDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1037.572998046875 1 1037.73328 1036.726 0.58828 0.00061048 1.9127 0.0019849 2.501 0.0025954 1038.742358927641 26.03 0.23497 26.057 25.984 26.219 0.026951 13 10 2 0 0 0 0.72196 1 13521 13521 0.45834 0 1 10211000 + 69177 20753 46071 47094 80743 80743 0.20911001487093017 VGILRQWQ 8 Unmodified _VGILRQWQ_ 0 0 0 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 ENSG00000160613|ENST00000320934|PCSK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2899169921875 2 500.290351 998.566149 0.36609 0.00018315 -0.82217 -0.00041132 -0.45608 -0.00022817 500.28982882537764 81.354 0.49077 81.354 81.102 81.593 0 44 22 3 0 0 0 0.76859 1 45184 45184 11.114 1.767 1 949460 69178 6738 46072 47095 80744 80744 0.06680886262597596 VGIMFRDKE 9 Unmodified _VGIMFRDKE_ 0 0 0 ENST00000558767.5_1_15:80445384-80454703:+|nuORF;ENSG00000103876|ENST00000561421|FAH;ENST00000537726.5_1_15:80452843-80454703:+|nuORF;nc|ENSG00000103876|P16930-2|FAH ENST00000558767.5_1_15:80445384-80454703:+|nuORF ENST00000558767.5_1_15:80445384-80454703:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.5270385742188 3 365.526948 1093.55902 NaN NaN NaN NaN NaN NaN NaN 17.956 1 17.956 17.456 18.456 0 0 0 0 0.85737 1 8892 8892 0.26902 0 1 69179 2164 46073 47096 80745 80745 0.015977855998926316 VGINNELWQ 9 Unmodified _VGINNELWQ_ 0 0 0 REV__ENSG00000112893|ENST00000261483|MAN2A1 REV__ENSG00000112893|ENST00000261483|MAN2A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.1864624023438 3 358.185579 1071.53491 NaN NaN NaN NaN NaN NaN NaN 39.817 1 39.817 39.317 40.317 0 0 0 0 0.84564 1 21366 21366 1.0715 0.44464 1 + 69180 18842 46074 47097 80746 80746 0.0020026843783398363 VGIPTIPLPRV 11 Unmodified _VGIPTIPLPRV_ 0 0 0 REV__ENSG00000053254|ENST00000557258|FOXN3 REV__ENSG00000053254|ENST00000557258|FOXN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3709716796875 2 581.371341 1160.72813 1.5608 0.00090738 -1.4226 -0.00082705 0.13817 8.0327E-05 581.3704085909388 104.79 0.12086 98.619 98.559 98.68 -6.1757 36 15 3 0 0 0 0.73115 1 70137 70137 1.3295 0 1 22443000 + 69181 17274 46075 47098 80747 80747 0.15419430224869757 VGIPVTDE 8 Unmodified _VGIPVTDE_ 0 0 0 ENST00000515736.2_1_5:174938457-174940595:+|nuORF;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENSG00000164466|ENST00000321442|SFXN1 ENST00000515736.2_1_5:174938457-174940595:+|nuORF ENST00000515736.2_1_5:174938457-174940595:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2188415527344 2 415.218726 828.422899 NaN NaN NaN NaN NaN NaN NaN 53.675 1 53.611 53.111 54.111 -0.063423 0 0 0 0.97348 1 29125 29125 5.7604 0 1 69182 7200 46076 47099 80748 80748 0.001824143608587292 VGIQGSVF 8 Unmodified _VGIQGSVF_ 0 0 0 ENST00000294072.8_2_11:61129294-61129597:-|nuORF ENST00000294072.8_2_11:61129294-61129597:-|nuORF ENST00000294072.8_2_11:61129294-61129597:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.7250061035156 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 0.51465 1 0.49259 -0.0074111 0.99259 -0.022065 0 0 0 0.97444 1 273 273 2.8892 0 1 69183 11481 46077 47100 80749 80749 0.022904418059511045 VGIRGVFSNKF 11 Unmodified _VGIRGVFSNKF_ 0 0 0 ENSG00000138675|ENST00000312465|FGF5;ENST00000503413.1_1_4:81189541-81207823:+|nuORF ENSG00000138675|ENST00000312465|FGF5 ENSG00000138675|ENST00000312465|FGF5 MSMS AL20221201_MKP_PDAC_01 4 408.5692138671875 3 408.568024 1222.68224 NaN NaN NaN NaN NaN NaN NaN 16.942 1 14.356 13.856 14.856 -2.5866 0 0 0 0.93893 1 8816 8816 2.8433 0.10809 1 69184 5086 46078 47101 80750 80750 0.07980785042627758 VGIRVCIYVY 10 Unmodified _VGIRVCIYVY_ 0 0 0 ENST00000267859.7_1_15:59955471-59955648:-|nuORF ENST00000267859.7_1_15:59955471-59955648:-|nuORF ENST00000267859.7_1_15:59955471-59955648:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2202453613281 3 395.554727 1183.64235 -0.64335 -0.00025448 1.9012 0.00075202 1.2578 0.00049754 395.5554543335658 16.64 0.017441 16.64 16.624 16.641 0 7 5 2 0 0 0 0.24007 1 8123 8123 0.15932 0 1 463500 69185 11354 46079 47102 80751 80751 0.05787522047717175 VGISNLEML 9 Unmodified _VGISNLEML_ 0 0 0 REV__PPP6R3-LRP5|1|fusion REV__PPP6R3-LRP5|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2630004882812 2 488.26261 974.510668 0.53447 0.00026096 0.51734 0.0002526 1.0518 0.00051356 488.26286517251094 38.678 0.4817 38.678 38.376 38.858 0 46 25 2 0 0 0 0.54444 1 20757 20757 4.756 0 1 6959500 + 69186 30078 46080 47103 80752 80752 0.022392919599724337 VGISVEGD 8 Unmodified _VGISVEGD_ 0 0 0 ENST00000272091.7_1_1:226180251-226183014:-|nuORF ENST00000272091.7_1_1:226180251-226183014:-|nuORF ENST00000272091.7_1_1:226180251-226183014:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1972961425781 2 388.195251 774.375948 NaN NaN NaN NaN NaN NaN NaN 28.038 1 27.991 27.491 28.491 -0.046408 0 0 0 0.97444 1 14464 14464 2.5775 0 1 69187 11368 46081 47104 80753 80753 -0.020264451902789915 VGITLLPQ 8 Unmodified _VGITLLPQ_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 ENSG00000172534|ENST00000310441|HCFC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.7639770507812 2 420.763104 839.511654 NaN NaN NaN NaN NaN NaN NaN 25.162 1 25.186 24.686 25.686 0.024429 0 0 0 0.97444 1 13008 13008 2.5775 0.51773 1 69188 8230 46082 47105 80754 80754 0.08547874391183541 VGIVVDPLF 9 Unmodified _VGIVVDPLF_ 0 0 0 ENSG00000083807|ENST00000263093|SLC27A5;nc|ENSG00000083807|Q9Y2P5-2|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 ENSG00000083807|ENST00000263093|SLC27A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7841491699219 2 479.784036 957.553519 0.48538 0.00023288 -0.056239 -2.6983E-05 0.42914 0.00020589 479.7839805462856 96.519 0.388 96.214 96.009 96.397 -0.30472 56 24 3 0 0 0 0.58466 1 52633 52633 2.3027 1.5091 1 1050600 69189 1374 46083 47106 80755 80755 0.0730443007971644 VGIWVPRIVP 10 Unmodified _VGIWVPRIVP_ 0 0 0 ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENST00000587225.1_1_19:1989877-1990887:-|nuORF ENST00000587225.1_1_19:1989877-1990887:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2379760742188 3 379.237726 1134.69135 0.097442 3.6954E-05 0.84815 0.00032165 0.94559 0.0003586 379.2380591016329 73.046 0.97389 73.088 72.316 73.29 0.041725 82 46 2 0 0 0 0.71981 1 40218 40218 0.69767 0.07084 1 3743300 69190 15635 46084 47107 80756 80756 0.1293917839898313 VGIYLEEAKI 10 Unmodified _VGIYLEEAKI_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8243408203125 2 567.823889 1133.63323 0.61161 0.00034728 0.30122 0.00017104 0.91282 0.00051832 567.8239685303894 89.831 0.30649 89.33 89.172 89.479 -0.50171 24 15 2 0 0 0 0.65502 1 49088 49088 7.9102 1.187 1 565150 + 69191 23366 46085 47108 80757 80757 0.07175451963030355 VGKDFLSSL 9 Unmodified _VGKDFLSSL_ 0 0 0 ENSG00000152443|ENST00000317178|ZNF776 ENSG00000152443|ENST00000317178|ZNF776 ENSG00000152443|ENST00000317178|ZNF776 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.2693786621094 2 483.26875 964.522947 NaN NaN NaN NaN NaN NaN NaN 35.011 1 34.789 34.289 35.289 -0.2224 0 0 0 0.82396 1 18319 18319 4.756 0 1 69192 6185 46086 47109 80758 80758 0.03926651694678185 VGKDWRDLF 9 Unmodified _VGKDWRDLF_ 0 0 0 nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2997436523438 2 568.298373 1134.58219 0.32792 0.00018636 0.42931 0.00024398 0.75723 0.00043033 568.2987821500097 88.814 0.25437 88.814 88.699 88.954 0 29 16 2 0 0 0 0.49272 1 49140 49140 7.9102 0.62092 1 607260 69193 2816 46087 47110 80759 80759 0.020285477088464177 VGKDWRDLF 9 Unmodified _VGKDWRDLF_ 0 0 0 nc|ENSG00000111696|Q86UY8-2|NT5DC3;ENSG00000111696|ENST00000392876|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 nc|ENSG00000111696|Q86UY8-2|NT5DC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.298373 1134.58219 0.61628 0.00035023 0.13549 7.6997E-05 0.75177 0.00042723 568.2981411145391 89.355 0.13699 88.853 88.8 88.937 -0.50171 0.0195 -0.00024966 NaN 7.9102 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 320340 69194 2816 46087 47110 0.020285477088464177 VGKEDGSVI 9 Unmodified _VGKEDGSVI_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2438049316406 2 452.242732 902.470912 NaN NaN NaN NaN NaN NaN NaN 19.268 1 19.291 18.791 19.791 0.023106 0 0 0 0.7818 1 9705 9705 6.7232 0.96273 1 + 69195 17708 46088 47111 80760 80760 0.0157748828091826 VGKEEFVY 8 Unmodified _VGKEEFVY_ 0 0 0 nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;nc|ENSG00000163629|Q12923-2|PTPN13 nc|ENSG00000163629|Q12923-3|PTPN13 nc|ENSG00000163629|Q12923-3|PTPN13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2463989257812 2 485.74765 969.480748 0.36586 0.00017772 0.97576 0.00047397 1.3416 0.00065169 485.74837712848716 55.085 0.38481 54.607 54.389 54.774 -0.47798 30 18 2 0 0 0 0.80624 1 29798 29798 2.8892 0 1 884080 69196 7034 46089 47112 80761 80761 -0.00521323713712718 VGKEGPFVH 9 Unmodified _VGKEGPFVH_ 0 0 0 ENSG00000188037|ENST00000343257|CLCN1 ENSG00000188037|ENST00000343257|CLCN1 ENSG00000188037|ENST00000343257|CLCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2642211914062 2 485.261259 968.507966 -0.39827 -0.00019326 0.020623 1.0008E-05 -0.37764 -0.00018326 485.2612948738922 28.713 0.43925 28.713 28.483 28.923 0 76 21 5 0 0 0 0.58466 1 14771 14771 2.3027 1.5091 1 38669000 69197 9619 46090 47113 80762 80762 0.022452046173157214 VGKFAARR 8 Unmodified _VGKFAARR_ 0 0 0 ENST00000309575.4_1_3:142838724-142839039:+|nuORF ENST00000309575.4_1_3:142838724-142839039:+|nuORF ENST00000309575.4_1_3:142838724-142839039:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 904.5473022460938 1 904.547545 903.540269 -0.33708 -0.00030491 -0.10739 -9.714E-05 -0.44447 -0.00040205 904.5475459686367 103.32 0.076912 103.27 103.23 103.31 -0.047928 4 2 2 0 0 0 0.80975 1 57396 57396 0.79363 0 1 5533400 69198 11664 46091 47114 80763 80763 0.08464036810983089 VGKFKNGTLI 10 Unmodified _VGKFKNGTLI_ 0 0 0 nc|nan|Q8NDD1-6|C1orf131;ENSG00000143633|ENST00000366649|C1orf131;nc|nan|Q8NDD1-5|C1orf131 nc|nan|Q8NDD1-6|C1orf131 nc|nan|Q8NDD1-6|C1orf131 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 538.7598266601562 2 538.826766 1075.63898 1.3477 0.00072616 -0.15904 -8.5694E-05 1.1886 0.00064047 538.826602551062 58.833 0.42799 52.758 52.565 52.993 -6.0745 37 23 2 0 0 0 0.19561 1 37770 37770 24.021 2.2739 1 24094000 69199 5539 46092 47115 80764 80764 0.10418595265377917 VGKFYWNIH 9 Unmodified _VGKFYWNIH_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.3029174804688 2 582.303458 1162.59236 NaN NaN NaN NaN NaN NaN NaN 86.548 1 86.548 86.048 87.048 0 0 0 0 0.85737 1 47938 47938 0.6015 0 1 + 69200 24211 46093 47116 80765 80765 0.017571554340747753 VGKGCGRL 8 Unmodified _VGKGCGRL_ 0 0 0 L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.9046020507812 2 395.223623 788.432692 -0.22641 -8.9481E-05 -2.0424 -0.0008072 -2.2688 -0.00089668 395.2228437536291 33.211 0.23867 33.052 32.86 33.098 -0.15918 12 9 2 0 0 0 8.7369 1 17291 17291 2.8892 0 1 754140 69201 15957 46094 47117 80766 80766 0.030013238852461654 VGKGCGRL 8 Unmodified _VGKGCGRL_ 0 0 0 L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 395.223623 788.432692 -0.66209 -0.00026167 -2.0532 -0.00081146 -2.7153 -0.0010731 395.22265986763733 33.132 0.58492 33.132 32.87 33.455 0 0.068243 -0.00018737 NaN 2.8892 51 29 2 NaN NaN NaN NaN 0 NaN NaN 0 5561800 69202 15957 46094 47117 0.030013238852461654 VGKGCGRL 8 Unmodified _VGKGCGRL_ 0 0 0 L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense L1ME3D_dup2886|chr11:69368653-69368970:-|1.1048833048297118|0.2157000848219401|2.36|167.0|5|2|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 395.223623 788.432692 -0.17167 -6.7847E-05 -1.5193 -0.00060046 -1.691 -0.0006683 395.22290009088135 32.978 0.51152 33.008 32.763 33.274 0.029743 -0.056133 0.00023465 NaN 2.8892 58 22 3 NaN NaN NaN NaN 0 NaN NaN 0 13618000 69203 15957 46094 47117 0.030013238852461654 VGKGEELL 8 Unmodified _VGKGEELL_ 0 0 0 REV__ENSG00000105617|ENST00000222224|LENG1 REV__ENSG00000105617|ENST00000222224|LENG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7429809570312 2 422.742368 843.470183 -0.47551 -0.00020102 1.554 0.00065694 1.0785 0.00045592 422.74284631982385 28.989 0.23891 28.989 28.883 29.122 0 16 11 2 0 0 0 0.76266 1 14998 14998 11.64 0.81637 1 970560 + 69204 18440 46095 47118 80767 80767 0.04218693631867154 VGKGGVRG 8 Unmodified _VGKGGVRG_ 0 0 0 ENST00000590898.5_1_18:33647434-33647470:-|nuORF ENST00000590898.5_1_18:33647434-33647470:-|nuORF ENST00000590898.5_1_18:33647434-33647470:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7203979492188 2 365.221937 728.429321 0.29588 0.00010806 1.491 0.00054455 1.7869 0.00065261 365.22234510392144 40.803 0.09972 40.801 40.752 40.851 -0.0017929 6 4 2 0 0 0 8.7369 1 21798 21798 0.69038 0 1 1165400 69205 15692 46096 47119 80768 80768 0.054243971028995475 VGKGLGAR 8 Unmodified _VGKGLGAR_ 0 0 0 ENST00000355630.7_1_22:40807293-40807389:-|nuORF ENST00000355630.7_1_22:40807293-40807389:-|nuORF ENST00000355630.7_1_22:40807293-40807389:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.7116088867188 2 379.237587 756.460622 1.7956 0.00068096 -0.60987 -0.00023129 1.1857 0.00044968 379.2370952056228 35.821 0.36333 31.628 31.457 31.82 -4.1928 34 22 2 0 0 0 8.7369 1 20748 20748 14.582 5.2343 1 7434900 69206 12082 46097 47120 80769 80769 0.07264970136986904 VGKGPQWKEF 10 Unmodified _VGKGPQWKEF_ 0 0 0 ENST00000466125.1_1_17:61932188-61934782:+|nuORF;ENST00000482005.5_1_17:61932137-61934782:+|nuORF ENST00000466125.1_1_17:61932188-61934782:+|nuORF ENST00000466125.1_1_17:61932188-61934782:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.325927734375 2 588.314023 1174.61349 -0.49103 -0.00028888 -1.1643 -0.00068497 -1.6553 -0.00097385 588.3136713083181 101.36 0.083992 101.32 101.24 101.33 -0.04216 6 2 3 0 0 0 0.70951 1 56296 56296 1.8442 0 1 1244800 69207 13749 46098 47121 80770 80770 0.03317120742917723 VGKGRAAA 8 Unmodified _VGKGRAAA_ 0 0 0 REV__ENST00000471603.6_1_16:2149506-2153410:-|nuORF REV__ENST00000471603.6_1_16:2149506-2153410:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7197570800781 2 365.221937 728.429321 -0.075892 -2.7717E-05 -0.11908 -4.3492E-05 -0.19498 -7.121E-05 365.2219897866127 33.102 0.11925 33.131 33.067 33.186 0.029747 8 4 3 0 0 0 8.7369 1 17413 17413 0.69038 0 1 600800 + 69208 27495 46099 47122 80771 80771 0.0542439710287681 VGKHSQIRKL 10 Unmodified _VGKHSQIRKL_ 0 0 0 REV__ENSG00000168589|ENST00000305904|DYNLRB2 REV__ENSG00000168589|ENST00000305904|DYNLRB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.8624877929688 3 389.243652 1164.70913 1.2977 0.00050511 0.19623 7.6383E-05 1.4939 0.00058149 389.24353595177075 21.926 0.23239 19.191 19.102 19.335 -2.7348 21 13 2 0 0 0 0.23895 1 11809 11809 2.086 1.3095 1 1477700 + 69209 22325 46100 47123 80772 80772 0.1333589365383432 VGKIHWEK 8 Unmodified _VGKIHWEK_ 0 0 0 ENSG00000239305|ENST00000237455|RNF103;ENST00000463333.6_1_2:86831591-86842310:-|nuORF ENSG00000239305|ENST00000237455|RNF103 ENSG00000239305|ENST00000237455|RNF103 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7840270996094 2 498.784902 995.55525 NaN NaN NaN NaN NaN NaN NaN 21.727 1 21.727 21.227 22.227 0 0 0 0 0.97444 1 11015 11015 0.79363 0 1 69210 10661 46101 47124 80773 80773 0.057294838883080956 VGKKALQFEDC 11 Unmodified _VGKKALQFEDC_ 0 0 0 REV__ENST00000513024.5_1_4:41700377-41700494:+|nuORF REV__ENST00000513024.5_1_4:41700377-41700494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2120056152344 3 413.213029 1236.61726 NaN NaN NaN NaN NaN NaN NaN 19.529 1 19.537 19.037 20.037 0.0078487 0 0 0 0.94165 1 9937 9937 0.45452 0 1 + 69211 28173 46102 47125 80774 80774 0.008414224544821991 VGKKCCPA 8 Unmodified _VGKKCCPA_ 0 0 0 REV__ENST00000473054.1_1_14:68805457-68806021:-|nuORF REV__ENST00000473054.1_1_14:68805457-68806021:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2065124511719 2 403.206584 804.398615 NaN NaN NaN NaN NaN NaN NaN 18.092 1 18.098 17.598 18.598 0.0060463 0 0 0 0.97444 1 9155 9155 0.79363 0 1 + 69212 27530 46103 47126 80775 80775 -0.011408405980205316 VGKKGLKTI 9 Unmodified _VGKKGLKTI_ 0 0 0 REV__ENSG00000080608|ENST00000397885|PUM3 REV__ENSG00000080608|ENST00000397885|PUM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.3165283203125 2 472.318577 942.622602 NaN NaN NaN NaN NaN NaN NaN 48.647 1 48.275 47.775 48.775 -0.37172 0 0 0 0.7243 1 26115 26115 8.5933 0 1 + 69213 17671 46104 47127 80776 80776 0.14899514099283806 VGKKKKKKKKA 11 Unmodified _VGKKKKKKKKA_ 0 0 0 REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.9209594726562 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 17.717 1 17.722 17.222 18.222 0.0050564 0 0 0 0.9435 1 8949 8949 0 0 1 + 69214 26661 46105 47128 80777 80777 0.27310751578238524 VGKKKKKKKKA 11 Unmodified _VGKKKKKKKKA_ 0 0 0 REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.3061218261719 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 20.199 1 20.209 19.709 20.709 0.010553 0 0 0 0.9435 1 10295 10295 0 0 1 + 69215 26661 46105 47128 80778 80778 0.27310751578238524 VGKKKKKKKKA 11 Unmodified _VGKKKKKKKKA_ 0 0 0 REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.3056335449219 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 23.777 1 23.798 23.298 24.298 0.021185 0 0 0 0.9435 1 12253 12253 0 0 1 + 69216 26661 46105 47128 80779 80779 0.27310751578238524 VGKKKKKKKKA 11 Unmodified _VGKKKKKKKKA_ 0 0 0 REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF REV__ENST00000406961.5_1_2:24991338-24991476:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 424.3057861328125 3 424.306363 1269.89726 NaN NaN NaN NaN NaN NaN NaN 105.51 1 99.33 98.83 99.83 -6.1757 0 0 0 0.9435 1 70694 70694 0 0 1 + 69217 26661 46105 47128 80780 80780 0.27310751578238524 VGKKQYYEL 9 Unmodified _VGKKQYYEL_ 0 0 0 REV__nc|ENSG00000147853|Q9UIJ7-2|AK3 REV__nc|ENSG00000147853|Q9UIJ7-2|AK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5411071777344 3 376.541363 1126.60226 NaN NaN NaN NaN NaN NaN NaN 18.018 1 18.024 17.524 18.524 0.0060463 0 0 0 0.85737 1 9114 9114 0.26902 0 1 + 69218 20915 46106 47129 80781 80781 0.04402298648778924 VGKKRCMAW 9 Unmodified _VGKKRCMAW_ 0 0 0 ENST00000591903.1_2_17:26976053-26976209:-|nuORF ENST00000591903.1_2_17:26976053-26976209:-|nuORF ENST00000591903.1_2_17:26976053-26976209:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7417602539062 2 539.786064 1077.55758 -1.0312 -0.00055662 -1.9449 -0.0010498 -2.9761 -0.0016065 540.2857371761042 77.891 0.16968 77.409 77.269 77.439 -0.4826 10 9 2 0 0 0 0.21819 1 42653 42653 2.0598 0 1 2781500 69219 15712 46107 47130 80782 80782 0.02189873030124545 VGKKVSAK 8 Unmodified _VGKKVSAK_ 0 0 0 REV__ENST00000605322.1_1_10:5136636-5141836:+|nuORF REV__ENST00000605322.1_1_10:5136636-5141836:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.223876953125 2 408.76872 815.522887 1.0732 0.0004387 3.1129 0.0012724 4.1861 0.0017111 408.77083901781145 50.309 0.1628 50.26 50.21 50.373 -0.048824 9 7 2 0 0 0 8.7369 1 27224 27224 4.3292 2.485 1 537970 + 69220 29291 46108 47131 80783 80783 0.10774696485327695 VGKLIKHHF 9 Unmodified _VGKLIKHHF_ 0 0 0 REV__nc|ENSG00000145908|Q96RE9-4|ZNF300 REV__nc|ENSG00000145908|Q96RE9-4|ZNF300 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.2233581542969 3 360.222188 1077.64473 0.87034 0.00031352 0.98746 0.0003557 1.8578 0.00066922 360.22238410537307 41.469 0.4061 36.861 36.624 37.03 -4.6079 40 26 2 0 0 0 0.4887 1 24842 24842 8.1555 0 1 16079000 + 69221 20800 46109 47132 80784 80784 0.109017385676907 VGKLKTLIT 9 Unmodified _VGKLKTLIT_ 0 0 0 ENST00000449407.6_1_4:186611730-186696390:-|nuORF ENST00000449407.6_1_4:186611730-186696390:-|nuORF ENST00000449407.6_1_4:186611730-186696390:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 973.6509399414062 1 972.645194 971.637917 -0.29077 -0.00028282 1.21 0.0011769 0.91921 0.00089407 972.6456922941685 106 0.15131 105.95 105.89 106.05 -0.048103 12 6 2 0 0 0 0.61256 1 58749 58749 0.6015 0 1 5409900 69222 13502 46110 47133 80785 80785 0.15096380896466144 VGKLPPQL 8 Unmodified _VGKLPPQL_ 0 0 0 REV__ENSG00000166183|ENST00000551177|ASPG REV__ENSG00000166183|ENST00000551177|ASPG MSMS AL20221201_MKP_PDAC_01 4 426.2716064453125 2 426.271096 850.527639 NaN NaN NaN NaN NaN NaN NaN 97.3 1 91.124 90.624 91.624 -6.1757 0 0 0 0.85111 1 64482 64482 20.871 1.4322 1 + 69223 22092 46111 47134 80786 80786 0.09639580628083877 VGKNYGFVWN 10 Unmodified _VGKNYGFVWN_ 0 0 0 ENST00000013125.8_1_14:50949104-50952837:-|nuORF ENST00000013125.8_1_14:50949104-50952837:-|nuORF ENST00000013125.8_1_14:50949104-50952837:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.81689453125 2 592.298373 1182.58219 0.86765 0.00051391 0.035006 2.0734E-05 0.90265 0.00053464 592.2983049451966 63.941 0.33511 63.93 63.741 64.077 -0.010529 42 16 4 0 0 0 0.23634 1 34885 34885 6.7232 3.1267 1 19027000 69224 10965 46112 47135 80787 80787 -0.0017945229114957328 VGKPWRRRR 9 Unmodified _VGKPWRRRR_ 0 0 0 ENST00000507297.5_1_5:138858703-138860606:-|nuORF ENST00000507297.5_1_5:138858703-138860606:-|nuORF ENST00000507297.5_1_5:138858703-138860606:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.8720703125 2 605.87324 1209.73193 1.034 0.0006265 -2.2096 -0.0013387 -1.1756 -0.00071224 605.8717763744148 91.484 0.31656 91.52 91.297 91.614 0.036499 15 11 2 0 0 0 0.61256 1 50908 50908 0.6015 0.14316 1 3068200 69225 14535 46113 47136 80788 80788 0.13544957561953197 VGKQCKECRT 10 Unmodified _VGKQCKECRT_ 0 0 0 REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2 REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1931762695312 3 384.526842 1150.5587 NaN NaN NaN NaN NaN NaN NaN 17.34 1 17.353 16.853 17.853 0.013865 0 0 0 0.99091 1 8615 8615 0.69767 0.07084 1 + 69226 23484 46114 47137 80789 80789 -0.010559573916452791 VGKRAICP 8 Unmodified _VGKRAICP_ 0 0 0 ENST00000284320.5_1_3:100119782-100120241:-|nuORF ENST00000284320.5_1_3:100119782-100120241:-|nuORF ENST00000284320.5_1_3:100119782-100120241:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2459106445312 2 422.247098 842.479642 0.1782 7.5243E-05 -2.6977 -0.0011391 -2.5195 -0.0010638 422.2458559028473 28.08 0.20714 28.109 27.956 28.163 0.029564 10 7 2 0 0 0 0.78849 1 14595 14595 9.3474 3.587 1 2307300 69227 11434 46115 47138 80790 80790 0.052101834363725175 VGKRAICP 8 Unmodified _VGKRAICP_ 0 0 0 ENST00000284320.5_1_3:100119782-100120241:-|nuORF ENST00000284320.5_1_3:100119782-100120241:-|nuORF ENST00000284320.5_1_3:100119782-100120241:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.2456665039062 2 422.247098 842.479642 NaN NaN NaN NaN NaN NaN NaN 31.48 1 27.784 27.284 28.284 -3.6958 0 0 0 0.93066 1 17832 17832 14.582 1.0738 1 69228 11434 46115 47138 80791 80791 0.052101834363725175 VGKRAKGP 8 Unmodified _VGKRAKGP_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|85|2|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|85|2|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|85|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.7606506347656 2 406.758687 811.502821 NaN NaN NaN NaN NaN NaN NaN 58.025 1 57.959 57.459 58.459 -0.066036 0 0 0 0.95607 1 31594 31594 9.3474 0.75416 1 69229 15926 46116 47139 80792 80792 0.08952945545365765 VGKRGLCG 8 Unmodified _VGKRGLCG_ 0 0 0 REV__ENST00000526177.5_1_11:75161715-75162177:-|nuORF REV__ENST00000526177.5_1_11:75161715-75162177:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2246704101562 2 395.223623 788.432692 0.48743 0.00019264 3.1756 0.0012551 3.663 0.0014477 395.2254847774882 36.465 0.64953 36.465 36.207 36.857 0 47 31 2 0 0 0 0.80975 2 19336 19336;19454 0.79363 0 1 2776700 + 69230 28365 46117 47140 80793;80794 80793 0.030013238852461654 VGKRPQFVSE 10 Unmodified _VGKRPQFVSE_ 0 0 0 REV__ENSG00000022840|ENST00000325954|RNF10 REV__ENSG00000022840|ENST00000325954|RNF10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8808288574219 3 382.880379 1145.61931 NaN NaN NaN NaN NaN NaN NaN 18.061 1 18.061 17.561 18.561 0 0 0 0 0.99091 1 8952 8952 0.69767 0.42865 1 + 69231 17113 46118 47141 80795 80795 0.052322192545943835 VGKRPVGG 8 Unmodified _VGKRPVGG_ 0 0 0 REV__nc|ENSG00000161618|Q8IZ83-2|ALDH16A1 REV__nc|ENSG00000161618|Q8IZ83-2|ALDH16A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2222290039062 2 385.237587 768.460622 0.44569 0.0001717 3.9439 0.0015193 4.3896 0.001691 385.2383152915393 42.663 0.063847 42.654 42.622 42.686 -0.0088196 4 2 2 0 0 0 8.7369 1 22851 22851 2.5775 0 1 2051800 + 69232 29243 46119 47142 80796 80796 0.0671297013699359 VGKTGAGK 8 Unmodified _VGKTGAGK_ 0 0 0 ENSG00000133574|ENST00000255945|GIMAP4 ENSG00000133574|ENST00000255945|GIMAP4 ENSG00000133574|ENST00000255945|GIMAP4 MSMS AL20221201_MKP_PDAC_01 4 359.2178649902344 2 359.216321 716.418088 NaN NaN NaN NaN NaN NaN NaN 15.481 1 12.954 12.454 13.454 -2.5273 0 0 0 0.97444 1 7946 7946 0.79363 0 1 69233 4519 46120 47143 80797 80797 0.04853575008758071 VGKVETNQ 8 Unmodified _VGKVETNQ_ 0 0 0 nc|ENSG00000161652|Q6UXV1-2|IZUMO2;ENSG00000161652|ENST00000293405|IZUMO2 nc|ENSG00000161652|Q6UXV1-2|IZUMO2 nc|ENSG00000161652|Q6UXV1-2|IZUMO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2332458496094 2 437.735074 873.455596 0.24071 0.00010537 -0.8787 -0.00038464 -0.638 -0.00027927 437.7345764794011 51.726 0.31683 51.667 51.435 51.751 -0.058918 21 15 2 0 0 0 8.7369 1 28007 28007 7.9102 1.187 1 1838600 69234 6800 46121 47144 80798 80798 0.013806214837131847 VGKVGVIFRF 10 Unmodified _VGKVGVIFRF_ 0 0 0 ENST00000335574.9_2_20:30157021-30157309:+|nuORF ENST00000335574.9_2_20:30157021-30157309:+|nuORF ENST00000335574.9_2_20:30157021-30157309:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5666198730469 3 374.565843 1120.6757 0.58213 0.00021805 1.0153 0.0003803 1.5975 0.00059835 374.5661272163831 65.192 0.67091 65.192 64.76 65.431 7.6294E-06 94 32 4 0 0 0 0.71276 1 35681 35681 0.62683 0.35781 1 18675000 69235 11900 46122 47145 80799 80799 0.12018891881916716 VGKVIYKQFK 10 Unmodified _VGKVIYKQFK_ 0 0 0 nc|ENSG00000160200|P35520-2|CBS;ENSG00000160200|ENST00000398165|CBS;ENST00000462349.5_1_21:44473992-44479496:-|nuORF nc|ENSG00000160200|P35520-2|CBS nc|ENSG00000160200|P35520-2|CBS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9163513183594 3 403.916653 1208.72813 NaN NaN NaN NaN NaN NaN NaN 39.52 1 39.532 39.032 40.032 0.011452 0 0 0 0.99897 1 21052 21052 0.77653 0.078866 1 69236 6696 46123 47146 80800 80800 0.13211430224873766 VGKVKKKLR 9 Unmodified _VGKVKKKLR_ 0 0 0 nc|ENSG00000166960|Q5BJE1-3|CCDC178;nc|ENSG00000166960|Q5BJE1-4|CCDC178;ENSG00000166960|ENST00000383096|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 nc|ENSG00000166960|Q5BJE1-3|CCDC178 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1056.240966796875 1 1055.74116 1054.73388 0.72838 0.00076898 0.39888 0.00042111 1.1273 0.0011901 1055.7423263674432 34.755 0.25678 30.66 30.581 30.838 -4.0951 17 14 2 0 0 0 0.21889 1 20032 20032 0.6015 0 1 5638900 69237 7556 46124 47147 80801 80801 0.20870573527190572 VGKVLKRRK 9 Unmodified _VGKVLKRRK_ 0 0 0 ENST00000452510.6_2_5:134102740-134109419:+|nuORF ENST00000452510.6_2_5:134102740-134109419:+|nuORF ENST00000452510.6_2_5:134102740-134109419:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1084.754516601562 1 1083.74731 1082.74003 0.53075 0.0005752 0.46689 0.00050599 0.99764 0.0010812 1084.7507326269576 51.544 0.097015 45.895 45.848 45.945 -5.649 8 5 2 0 0 0 0.61256 1 32458 32458 0.6015 0.14316 1 24793000 69238 13543 46125 47148 80802 80802 0.20197091758745955 VGKVPGVV 8 Unmodified _VGKVPGVV_ 0 0 0 REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.7461547851562 2 377.744714 753.474875 NaN NaN NaN NaN NaN NaN NaN 39.316 1 39.327 38.827 39.827 0.011452 0 0 0 0.97444 1 20937 20937 0.79363 0 1 + 69239 22471 46126 47149 80803 80803 0.0882762256528622 VGKWPIFTL 9 Unmodified _VGKWPIFTL_ 0 0 0 RCBTB1|p.D3N|1|0.13|ENSG00000136144|chr13:49567273-49567273|C/T|missense_variant;nc|ENSG00000136144|Q8NDN9-2|RCBTB1;ENSG00000136144|ENST00000378302|RCBTB1 RCBTB1|p.D3N|1|0.13|ENSG00000136144|chr13:49567273-49567273|C/T|missense_variant RCBTB1|p.D3N|1|0.13|ENSG00000136144|chr13:49567273-49567273|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.211181640625 3 354.211177 1059.6117 NaN NaN NaN NaN NaN NaN NaN 16.023 1 16.023 15.523 16.523 0 0 0 0 0.85737 1 7774 7774 0.26902 0 1 69240 4791 46127 47150 80804 80804 0.0842811172499296 VGKYRELRE 9 Unmodified _VGKYRELRE_ 0 0 0 REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF REV__ENST00000513627.1_1_5:175921035-175923719:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.885498046875 3 383.884012 1148.63021 NaN NaN NaN NaN NaN NaN NaN 14.898 1 14.904 14.404 15.404 0.0057774 0 0 0 0.85737 1 7405 7405 0.26902 0 1 + 69241 28181 46128 47151 80805 80805 0.061836216289066215 VGKYRVRR 8 Unmodified _VGKYRVRR_ 0 0 0 ENSG00000126778|ENST00000645694|SIX1;ENSG00000170577|ENST00000303077|SIX2 ENSG00000126778|ENST00000645694|SIX1 ENSG00000126778|ENST00000645694|SIX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3240966796875 2 517.322517 1032.63048 NaN NaN NaN NaN NaN NaN NaN 13.826 1 13.833 13.333 14.333 0.0073986 0 0 0 0.97444 1 6830 6830 0.79363 0 1 69242 3968 46129 47152 80806 80806 0.11547086139398743 VGKYWVMK 8 Unmodified _VGKYWVMK_ 0 0 0 REV__ENSG00000172244|ENST00000306862|C5orf34 REV__ENSG00000172244|ENST00000306862|C5orf34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.77880859375 2 505.778231 1009.54191 -0.72023 -0.00036428 0.56136 0.00028392 -0.15887 -8.0353E-05 505.77884570050225 20.886 0.090866 20.915 20.865 20.956 0.028357 6 3 2 0 0 0 0.80676 1 10599 10599 2.5775 0 1 482600 + 69243 22635 46130 47153 80807 80807 0.03751909784716645 VGLAELTS 8 Unmodified _VGLAELTS_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1;nc|ENSG00000169641|Q86V48-2|LUZP1;nc|ENSG00000169641|Q86V48-3|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2225036621094 2 395.221268 788.427984 NaN NaN NaN NaN NaN NaN NaN 33.56 1 33.56 33.06 34.06 0 0 0 0 0.97444 1 17612 17612 2.5775 0 1 69244 7895 46131 47154 80808 80808 0.025307182234769243 VGLAGGKL 8 Unmodified _VGLAGGKL_ 0 0 0 REV__ENSG00000164823|ENST00000451899|OSGIN2 REV__ENSG00000164823|ENST00000451899|OSGIN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7305908203125 2 357.729064 713.443575 NaN NaN NaN NaN NaN NaN NaN 39.617 1 39.628 39.128 40.128 0.011452 0 0 0 0.97444 1 21106 21106 2.5775 0 1 + 69245 21954 46132 47155 80809 80809 0.0753904953116944 VGLALLGLFSF 11 Unmodified _VGLALLGLFSF_ 0 0 0 REV__nc|ENSG00000122420|P43088-6|PTGFR REV__nc|ENSG00000122420|P43088-6|PTGFR MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.4558715820312 2 568.839342 1135.66413 0.98859 0.00056235 -0.16604 -9.4448E-05 0.82256 0.0004679 568.8391799859468 98.541 0.28664 92.365 92.221 92.508 -6.1757 63 20 4 0 0 0 0.37677 1 65341 65341 22.736 0.98964 1 353610000 + 69246 19343 46133 47156 80810 80810 0.10172650067943323 VGLALRIH 8 Unmodified _VGLALRIH_ 0 0 0 REV__nc|ENSG00000196290|Q9GZT8-2|NIF3L1 REV__nc|ENSG00000196290|Q9GZT8-2|NIF3L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.7820129394531 2 439.782162 877.549771 NaN NaN NaN NaN NaN NaN NaN 38.609 1 38.621 38.121 39.121 0.011452 0 0 0 0.97444 1 20537 20537 5.2307 0 1 + 69247 23812 46134 47157 80811 80811 0.10609805096498803 VGLALRIH 8 Unmodified _VGLALRIH_ 0 0 0 REV__nc|ENSG00000196290|Q9GZT8-2|NIF3L1 REV__nc|ENSG00000196290|Q9GZT8-2|NIF3L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.7825622558594 2 439.782162 877.549771 1.1477 0.00050476 -0.091499 -4.024E-05 1.0562 0.00046452 439.782133733296 42.829 0.30835 38.144 37.952 38.26 -4.6846 32 19 2 0 0 0 0.78849 1 25849 25849 9.3474 0 1 10640000 + 69248 23812 46134 47157 80812 80812 0.10609805096498803 VGLAQDHGW 9 Unmodified _VGLAQDHGW_ 0 0 0 ENST00000494624.1_1_X:100872426-100872564:-|nuORF ENST00000494624.1_1_X:100872426-100872564:-|nuORF ENST00000494624.1_1_X:100872426-100872564:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7393798828125 2 491.740691 981.466829 NaN NaN NaN NaN NaN NaN NaN 16.359 1 16.364 15.864 16.864 0.0050564 0 0 0 0.84369 1 8200 8200 2.3027 0 1 69249 14336 46135 47158 80813 80813 -0.024645564221486893 VGLCKQNGVSV 11 Unmodified _VGLCKQNGVSV_ 0 0 0 REV__ENST00000489728.1_1_11:61188804-61196932:-|nuORF REV__ENST00000489728.1_1_11:61188804-61196932:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2990112304688 2 552.297516 1102.58048 NaN NaN NaN NaN NaN NaN NaN 14.64 1 14.609 14.109 15.109 -0.030868 0 0 0 0.94165 1 7137 7137 1.3295 0.63916 1 + 69250 27866 46136 47159 80814 80814 0.03329170628603606 VGLCRHFA 8 Unmodified _VGLCRHFA_ 0 0 0 ENST00000396950.3_1_11:4703114-4703567:-|nuORF ENST00000396950.3_1_11:4703114-4703567:-|nuORF ENST00000396950.3_1_11:4703114-4703567:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.7366333007812 2 451.736897 901.459241 NaN NaN NaN NaN NaN NaN NaN 16.953 1 16.958 16.458 17.458 0.0050564 0 0 0 0.97444 1 8526 8526 0.79363 0 1 69251 12811 46137 47160 80815 80815 0.004570127765759935 VGLDRSFH 8 Unmodified _VGLDRSFH_ 0 0 0 REV__ENST00000301738.8_1_16:2757389-2757602:+|nuORF REV__ENST00000301738.8_1_16:2757389-2757602:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 932.1400146484375 1 930.479191 929.471915 3.0795 0.0028654 1.3271 0.0012348 4.4065 0.0041002 930.4804135489661 97.11 0.67747 97.103 96.826 97.503 -0.007019 62 25 3 0 0 0 0.80676 1 53843 53843 2.5775 0.73324 1 23123000 + 69252 25323 46138 47161 80816 80816 0.004357474404741879 VGLDVFLHKE 10 Unmodified _VGLDVFLHKE_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2163391113281 3 386.21688 1155.62881 -0.017693 -6.8332E-06 2.444 0.00094392 2.4263 0.00093709 386.21774116460114 51.638 0.39596 51.579 51.396 51.792 -0.058918 30 19 2 0 0 0 0.71042 1 27900 27900 1.7423 1.1154 1 3595600 + 69253 21902 46139 47162 80817 80817 0.057219875401415266 VGLEEQGQNF 10 Unmodified _VGLEEQGQNF_ 0 0 0 ENSG00000198948|ENST00000361618|MFAP3L;nc|ENSG00000198948|O75121-2|MFAP3L ENSG00000198948|ENST00000361618|MFAP3L ENSG00000198948|ENST00000361618|MFAP3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1974792480469 3 374.180494 1119.51965 -0.47769 -0.00017874 -1.4962 -0.00055986 -1.9739 -0.00073861 374.1798445727517 30.729 0.95697 30.729 30.402 31.359 0 70 46 2 0 0 0 0.23986 1 16009 16009 2.086 0.89267 1 1564200 69254 10208 46140 47163 80818 80818 -0.03532643149992509 VGLEGALLIL 10 Unmodified _VGLEGALLIL_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3191223144531 2 499.318243 996.621933 0.18159 9.0669E-05 1.3733 0.00068574 1.5549 0.0007764 499.3189585297678 99.642 0.1471 99.484 99.407 99.554 -0.1575 10 4 3 0 0 0 0.19662 1 54414 54414 34.102 1.797 1 1426700 69255 4143 46141 47164 80819 80819 0.12348674659574499 VGLESFSLAF 10 Unmodified _VGLESFSLAF_ 0 0 0 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.282470703125 2 535.281857 1068.54916 0.44726 0.00023941 0.49943 0.00026734 0.94669 0.00050674 535.2820058757491 84.595 0.63269 84.096 83.645 84.278 -0.49961 47 28 2 0 0 0 0.42068 1 46334 46334 20.454 3.5113 1 4606600 69256 3541 46142 47165 80820 80820 0.017629208661446683 VGLEWWWEN 9 Unmodified _VGLEWWWEN_ 0 0 0 ENST00000511915.1_1_12:112130513-112130759:+|nuORF ENST00000511915.1_1_12:112130513-112130759:+|nuORF ENST00000511915.1_1_12:112130513-112130759:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8587646484375 3 406.857463 1217.55056 NaN NaN NaN NaN NaN NaN NaN 20.573 1 20.583 20.083 21.083 0.010553 0 0 0 0.85737 1 10496 10496 0.26902 0.033176 1 69257 14614 46143 47166 80821 80821 -0.049514450450942604 VGLFFPDRDQP 11 Unmodified _VGLFFPDRDQP_ 0 0 0 REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.888671875 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 18.307 1 15.685 15.185 16.185 -2.6215 0 0 0 0.94144 1 9635 9635 0.50596 0.09769 1 + 69258 23449 46144 47167 80822 80822 0.007201845634881465 VGLFFPDRDQP 11 Unmodified _VGLFFPDRDQP_ 0 0 0 REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF REV__ENST00000307403.6_1_7:155500050-155531112:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8878784179688 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 18.98 1 16.359 15.859 16.859 -2.6215 0 0 0 0.94144 1 10027 10027 0.50596 0.09769 1 + 69259 23449 46144 47167 80823 80823 0.007201845634881465 VGLFTRFLK 9 Unmodified _VGLFTRFLK_ 0 0 0 ENSG00000135392|ENST00000678005|DNAJC14 ENSG00000135392|ENST00000678005|DNAJC14 ENSG00000135392|ENST00000678005|DNAJC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2247924804688 3 360.890327 1079.64915 0.34661 0.00012509 0.35797 0.00012919 0.70458 0.00025428 360.89029080854147 59.016 0.30403 58.955 58.801 59.105 -0.060722 39 14 4 0 0 0 0.32871 1 32152 32152 10.8 4.6077 1 2509900 69260 4701 46145 47168 80824 80824 0.11251202990615639 VGLFYGAGIF 10 Unmodified _VGLFYGAGIF_ 0 0 0 ENSG00000177201|ENST00000641276|OR2T12 ENSG00000177201|ENST00000641276|OR2T12 ENSG00000177201|ENST00000641276|OR2T12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2818603515625 2 522.28166 1042.54877 0.47597 0.00024859 -1.203 -0.00062832 -0.72706 -0.00037973 522.2812677170124 52.334 0.19405 51.9 51.77 51.964 -0.43367 28 9 4 0 0 0 0.46535 1 28265 28265 18.135 0 1 10238000 69261 8667 46146 47169 80825 80825 0.029195459369248056 VGLGAESD 8 Unmodified _VGLGAESD_ 0 0 0 REV__ENST00000155926.8_1_2:12857892-12858144:+|nuORF REV__ENST00000155926.8_1_2:12857892-12858144:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1796569824219 2 374.179601 746.344648 NaN NaN NaN NaN NaN NaN NaN 14.534 1 14.534 14.034 15.034 0 0 0 0 0.97444 1 6916 6916 2.5775 0 1 + 69262 24710 46147 47170 80826 80826 -0.03867018224377716 VGLGEDEEEQN 11 Unmodified _VGLGEDEEEQN_ 0 0 0 REV__ENST00000493555.5_1_1:118439453-118462815:-|nuORF REV__ENST00000493555.5_1_1:118439453-118462815:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7575073242188 2 609.759672 1217.50479 NaN NaN NaN NaN NaN NaN NaN 20.096 1 20.096 19.596 20.596 0 0 0 0 0.94165 1 10095 10095 1.3295 0.72803 1 + 69263 23837 46148 47171 80827 80827 -0.09526179808653978 VGLGLHAL 8 Unmodified _VGLGLHAL_ 0 0 0 REV__ENSG00000167548|ENST00000301067|KMT2D REV__ENSG00000167548|ENST00000301067|KMT2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2420654296875 2 390.242338 778.470124 -0.018924 -7.385E-06 -0.041803 -1.6313E-05 -0.060727 -2.3698E-05 390.242187832224 37.776 0.16874 37.505 37.375 37.544 -0.27133 10 7 2 0 0 0 0.80044 1 19885 19885 6.3541 0 1 2050800 + 69264 22217 46149 47172 80828 80828 0.07202738422506627 VGLGLHPLF 9 Unmodified _VGLGLHPLF_ 0 0 0 ENSG00000123064|ENST00000306014|DDX54;nc|ENSG00000123064|Q8TDD1-2|DDX54 ENSG00000123064|ENST00000306014|DDX54 ENSG00000123064|ENST00000306014|DDX54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7852172851562 2 476.78437 951.554188 1.2391 0.00059079 -0.48029 -0.000229 0.75882 0.00036179 476.7841442880293 96.118 0.43794 89.942 89.618 90.056 -6.1757 45 26 2 0 0 0 0.016115 1 63670 63670 67.413 38.926 1 8048300 69265 3676 46150 47173 80829 80829 0.07647269519418387 VGLGSSDH 8 Unmodified _VGLGSSDH_ 0 0 0 ENST00000332065.9_1_17:74077409-74078102:-|nuORF ENST00000332065.9_1_17:74077409-74078102:-|nuORF ENST00000332065.9_1_17:74077409-74078102:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.1850891113281 2 386.185217 770.355882 1.7115 0.00066096 -2.8924 -0.001117 -1.1809 -0.00045605 386.18403478066347 47.901 0.32512 42.667 42.386 42.711 -5.2339 29 19 2 0 0 0 0.80624 1 29757 29757 2.8892 0 1 7242700 69266 11867 46151 47174 80830 80830 -0.03848196130240922 VGLHCPAP 8 Unmodified _VGLHCPAP_ 0 0 0 ENST00000331220.6_1_X:151885448-151885603:+|nuORF;ENST00000356661.6_1_X:152482999-152483185:-|nuORF;ENST00000393902.3_X:151936155-151936361:-|nuORF;ENST00000409560.1_1_X:151884456-151885603:+|nuORF ENST00000331220.6_1_X:151885448-151885603:+|nuORF ENST00000331220.6_1_X:151885448-151885603:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.219970703125 2 397.204899 792.395244 NaN NaN NaN NaN NaN NaN NaN 19.983 1 20.011 19.511 20.511 0.028357 0 0 0 0.97444 1 10102 10102 0.79363 0 1 69267 11859 46152 47175 80831 80831 -0.009257673803745092 VGLHVDAC 8 Unmodified _VGLHVDAC_ 0 0 0 ENST00000406638.6_1_11:1892044-1892302:+|nuORF ENST00000406638.6_1_11:1892044-1892302:+|nuORF ENST00000406638.6_1_11:1892044-1892302:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.1991882324219 2 407.199813 812.385073 NaN NaN NaN NaN NaN NaN NaN 27.994 1 27.994 27.494 28.494 0 0 0 0 0.97444 1 14440 14440 2.8892 0 1 69268 12934 46153 47176 80832 80832 -0.028623751056102265 VGLHYMCKY 9 Unmodified _VGLHYMCKY_ 0 0 0 REV__nc|ENSG00000101191|Q9BTC0-3|DIDO1 REV__nc|ENSG00000101191|Q9BTC0-3|DIDO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2257690429688 2 557.26463 1112.51471 NaN NaN NaN NaN NaN NaN NaN 65.034 1 65.034 64.534 65.534 0 0 0 0 0.84369 1 36280 36280 2.3027 0 1 + 69269 29538 46154 47177 80833 80833 -0.03704941817954932 VGLKHTATG 9 Unmodified _VGLKHTATG_ 0 0 0 nc|ENSG00000164347|Q969S9-5|GFM2;nc|ENSG00000164347|Q969S9-4|GFM2;nc|ENSG00000164347|Q969S9-3|GFM2;ENSG00000164347|ENST00000296805|GFM2;nc|ENSG00000164347|Q969S9-2|GFM2;ENST00000514734.5_1_5:74026495-74034184:-|nuORF nc|ENSG00000164347|Q969S9-5|GFM2;ENST00000514734.5_1_5:74026495-74034184:-|nuORF nc|ENSG00000164347|Q969S9-5|GFM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2534484863281 2 442.253434 882.492316 NaN NaN NaN NaN NaN NaN NaN 22.29 1 22.29 21.79 22.79 0 0 0 0 0.84737 1 11331 11331 1.8442 0 1 69270 7186;14658 46155 47178 80834 80834 0.04636918100288767 VGLKTITT 8 Unmodified _VGLKTITT_ 0 0 0 nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54 nc|ENSG00000143952|Q9P1Q0-3|VPS54 nc|ENSG00000143952|Q9P1Q0-3|VPS54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.7611999511719 2 416.760561 831.506569 1.1127 0.00046373 1.2763 0.0005319 2.389 0.00099563 416.76112414094564 93.706 0.21239 87.531 87.451 87.663 -6.1757 17 12 2 0 0 0 0.76266 1 62062 62062 11.64 3.7301 1 5074900 69271 5570 46156 47179 80835 80835 0.08407570528561337 VGLLDLALEK 10 Unmodified _VGLLDLALEK_ 0 0 0 nc|ENSG00000240038|P19961-2|AMY2B;ENSG00000240038|ENST00000684275|AMY2B nc|ENSG00000240038|P19961-2|AMY2B nc|ENSG00000240038|P19961-2|AMY2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.8273315429688 2 535.826432 1069.63831 0.70677 0.00037871 1.638 0.00087768 2.3448 0.0012564 535.8274731751096 49.976 0.24742 44.437 44.236 44.483 -5.5391 25 15 2 0 0 0 0.56707 1 31243 31243 14.405 0 1 12137000 + 69272 10668 46157 47180 80836 80836 0.10627755825657914 VGLLLRQRQ 9 Unmodified _VGLLLRQRQ_ 0 0 0 REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF REV__ENST00000331569.5_1_8:37554703-37555105:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 541.8438110351562 2 541.843282 1081.67201 NaN NaN NaN NaN NaN NaN NaN 21.13 1 18.437 17.937 18.937 -2.693 0 0 0 0.82739 1 11287 11287 4.3292 0 1 + 69273 25604 46158 47181 80837 80837 0.1344422210806897 VGLLNCCYYF 10 Unmodified _VGLLNCCYYF_ 0 0 0 REV__ENSG00000170191|ENST00000304788|NANP REV__ENSG00000170191|ENST00000304788|NANP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2513122558594 3 398.848922 1193.52494 0.077511 3.0915E-05 0.76419 0.0003048 0.8417 0.00033571 398.8491347053178 48.979 0.24255 48.935 48.828 49.07 -0.04369 19 11 2 0 0 0 0.23981 1 26526 26526 0 0 1 1385000 + 69274 22455 46159 47182 80838 80838 -0.0640837888340684 VGLLTITLVII 11 Unmodified _VGLLTITLVII_ 0 0 0 REV__ENSG00000164073|ENST00000641686|MFSD8 REV__ENSG00000164073|ENST00000641686|MFSD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8892822265625 2 577.891575 1153.7686 NaN NaN NaN NaN NaN NaN NaN 20.878 1 20.888 20.388 21.388 0.010553 0 0 0 0.94301 1 10663 10663 0.35063 0 1 + 69275 21860 46160 47183 80839 80839 0.19786351824654957 VGLMFIVL 8 Unmodified _VGLMFIVL_ 0 0 0 REV__ENSG00000173285|ENST00000641535|OR10K1 REV__ENSG00000173285|ENST00000641535|OR10K1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 446.2391967773438 2 446.27225 890.529947 -0.066268 -2.9574E-05 4.219 0.0018828 4.1528 0.0018533 446.2736464355342 38.719 0.2976 38.432 38.398 38.696 -0.28687 21 13 2 0 0 0 8.7369 1 20542 20542 11.114 0 1 2286200 + 69276 22720 46161 47184 80840 80840 0.08030293041542791 VGLMMLLFLL 10 Unmodified _VGLMMLLFLL_ 0 0 0 REV__ENSG00000171224|ENST00000373279|FAM241B REV__ENSG00000171224|ENST00000373279|FAM241B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8995666503906 3 383.897325 1148.67015 NaN NaN NaN NaN NaN NaN NaN 17.596 1 17.61 17.11 18.11 0.013865 0 0 0 0.98914 1 8761 8761 0.77653 0.61721 1 + 69277 22547 46162 47185 80841 80841 0.1017570898361555 VGLMWWRL 8 Unmodified _VGLMWWRL_ 0 0 0 ENST00000437188.1_1_2:73597552-73597930:+|nuORF ENST00000437188.1_1_2:73597552-73597930:+|nuORF ENST00000437188.1_1_2:73597552-73597930:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1980590820312 3 354.196874 1059.56879 NaN NaN NaN NaN NaN NaN NaN 14.845 1 14.845 14.345 15.345 0 0 0 0 0.97444 1 7095 7095 0.45834 0.18932 1 69278 13343 46163 47186 80842 80842 0.041390183959265414 VGLNRRLRN 9 Unmodified _VGLNRRLRN_ 0 0 0 nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2 nc|ENSG00000113749|P25021|HRH2 nc|ENSG00000113749|P25021|HRH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5602111816406 3 366.559863 1096.65776 NaN NaN NaN NaN NaN NaN NaN 15.501 1 15.501 15.001 16.001 0 0 0 0 0.85737 1 7472 7472 0.26902 0 1 69279 2997 46164 47187 80843 80843 0.1132956967978771 VGLPAPFT 8 Unmodified _VGLPAPFT_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 801.4546508789062 1 801.450517 800.44324 1.3253 0.0010622 0.83436 0.0006687 2.1597 0.0017309 801.4511843999114 87.463 0.38552 81.287 81.146 81.531 -6.1757 35 20 2 0 0 0 0.48233 1 57777 57777 36.466 0 1 16942000 69280 598 46165 47188 80844 80844 0.03503629811314113 VGLPEDTVK 9 Unmodified _VGLPEDTVK_ 0 0 0 ENSG00000188322|ENST00000341901|SBK1 ENSG00000188322|ENST00000341901|SBK1 ENSG00000188322|ENST00000341901|SBK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2703857421875 2 479.266207 956.517862 0.4495 0.00021543 0.70191 0.0003364 1.1514 0.00055183 479.2664378216618 67.237 0.77846 67.237 66.86 67.639 0 82 35 4 0 0 0 0.55144 1 37635 37635 4.3292 0 1 21559000 69281 9650 46166 47189 80845 80845 0.03786347832055981 VGLPGEVGMTG 11 Unmodified _VGLPGEVGMTG_ 0 0 0 nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 nc|ENSG00000171502|Q17RW2-2|COL24A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7551574707031 2 508.757692 1015.50083 -1.2378 -0.00062975 -2.2772 -0.0011585 -3.515 -0.0017883 508.75619871796636 56.365 0.23293 55.88 55.708 55.941 -0.48554 18 11 3 0 0 0 0.39949 1 30578 30578 21.537 7.6309 1 4268000 69282 8111 46167 47190 80846 80846 -0.006298960453818836 VGLPGLKGL 9 Unmodified _VGLPGLKGL_ 0 0 0 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 ENSG00000187498|ENST00000375820|COL4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2793884277344 2 427.278921 852.543289 0.30837 0.00013176 -0.18277 -7.8093E-05 0.12561 5.3668E-05 427.2788462374474 59.663 0.22408 59.172 59.069 59.293 -0.49079 16 10 2 0 0 0 0.18465 1 32453 32453 24.674 0 1 1669600 69283 9554 46168 47191 80847 80847 0.11111867145143606 VGLQILTEFL 10 Unmodified _VGLQILTEFL_ 0 0 0 REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2249145507812 3 378.225264 1131.65396 1.6044 0.00060682 -1.2667 -0.00047909 0.33769 0.00012772 378.224841972428 19.965 0.29661 17.309 17.174 17.471 -2.6564 40 16 3 0 0 0 0.51153 1 10599 10599 15.739 1.5205 1 4842000 + 69284 24383 46169 47192 80848 80848 0.09340042342728339 VGLQLLIE 8 Unmodified _VGLQLLIE_ 0 0 0 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.7780456542969 2 442.776211 883.537869 0.15677 6.9414E-05 2.2332 0.00098881 2.39 0.0010582 442.77739537061217 32.397 0.36807 32.427 32.194 32.562 0.029743 19 15 2 0 0 0 0.80975 1 16991 16991 0.79363 0 1 1581800 + 69285 22472 46170 47193 80849 80849 0.09144143562673435 VGLQLLIE 8 Unmodified _VGLQLLIE_ 0 0 0 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.776211 883.537869 -1.0137 -0.00044886 2.0792 0.00092063 1.0655 0.00047177 442.7773621027024 32.54 0.06691 32.54 32.495 32.561 0 0.05673 -9.5351E-05 NaN 0.79363 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 946880 + 69286 22472 46170 47193 0.09144143562673435 VGLQLLIE 8 Unmodified _VGLQLLIE_ 0 0 0 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 442.776211 883.537869 0.15677 6.9414E-05 2.2332 0.00098881 2.39 0.0010582 442.77739537061217 32.397 0.36807 32.427 32.194 32.562 0.029743 -0.05673 4.1011E-05 NaN 0.79363 19 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1581800 + 69287 22472 46170 47193 0.09144143562673435 VGLQLVPV 8 Unmodified _VGLQLVPV_ 0 0 0 REV__ENSG00000171811|ENST00000368586|CFAP46 REV__ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.76708984375 2 412.765646 823.516739 1.233 0.00050893 0.60421 0.0002494 1.8372 0.00075833 412.76618782505136 37.103 0.72366 32.819 32.267 32.991 -4.2835 50 44 2 0 0 0 0.80676 1 21481 21481 2.5775 0 1 12866000 + 69288 22604 46171 47194 80850 80850 0.09792178253815109 VGLQREGVL 9 Unmodified _VGLQREGVL_ 0 0 0 REV__ENST00000317287.5_1_12:56224118-56224328:-|nuORF REV__ENST00000317287.5_1_12:56224118-56224328:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7853088378906 2 485.787641 969.56073 0.42237 0.00020518 -2.1282 -0.0010338 -1.7058 -0.00082866 485.78779771836963 45.294 0.67345 40.339 39.995 40.669 -4.9549 134 45 5 0 0 0 0.2143 1 27725 27725 21.747 1.293 1 86016000 + 69289 25478 46172 47195 80851 80851 0.07473162680150836 VGLRCRRH 8 Unmodified _VGLRCRRH_ 0 0 0 REV__ENST00000319070.2_1_16:681311-683059:+|nuORF REV__ENST00000319070.2_1_16:681311-683059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.7866821289062 2 498.785244 995.555936 1.0969 0.0005471 1.5234 0.00075987 2.6203 0.001307 498.7859242613047 82.677 0.62166 82.739 82.347 82.969 0.062004 47 23 3 0 0 0 0.80232 1 45808 45808 5.2307 0.47466 1 11465000 + 69290 25488 46173 47196 80852 80852 0.05798000056381625 VGLRGDMAAA 10 Unmodified _VGLRGDMAAA_ 0 0 0 REV__ENSG00000082458|ENST00000374360|DLG3 REV__ENSG00000082458|ENST00000374360|DLG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7503051757812 2 480.750201 959.48585 NaN NaN NaN NaN NaN NaN NaN 18.839 1 18.863 18.363 19.363 0.023106 0 0 0 0.8671 1 9474 9474 9.3831 1.473 1 + 69291 17707 46174 47197 80853 80853 0.004486568772449573 VGLRGLMIAVI 11 Unmodified _VGLRGLMIAVI_ 0 0 0 ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 ENSG00000117834|ENST00000438567|SLC5A9 MSMS AL20221201_MKP_PDAC_01 4 571.330078125 2 571.359919 1140.70529 NaN NaN NaN NaN NaN NaN NaN 89.364 1 83.188 82.688 83.688 -6.1757 0 0 0 0.85601 1 58989 58989 9.3831 1.473 1 69292 3338 46175 47198 80854 80854 0.14056087835774633 VGLRNTLTRI 10 Unmodified _VGLRNTLTRI_ 0 0 0 ENSG00000120820|ENST00000360814|GLT8D2 ENSG00000120820|ENST00000360814|GLT8D2 ENSG00000120820|ENST00000360814|GLT8D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5715942382812 3 381.571657 1141.69314 NaN NaN NaN NaN NaN NaN NaN 18.496 1 18.502 18.002 19.002 0.0060463 0 0 0 1.0019 1 9376 9376 0.15932 0 1 69293 3543 46176 47199 80855 80855 0.12796187416915927 VGLRYLPHE 9 Unmodified _VGLRYLPHE_ 0 0 0 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant;ENSG00000124459|ENST00000269973|ZNF45 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.3013305664062 2 542.300916 1082.58728 NaN NaN NaN NaN NaN NaN NaN 15.932 1 15.932 15.432 16.432 0 0 0 0 0.85737 1 7721 7721 0.6015 0 1 69294 3787 46177 47200 80856 80856 0.049288515714806636 VGLSKDEAPEK 11 Unmodified _VGLSKDEAPEK_ 0 0 0 ENSG00000178965|ENST00000326665|ERICH3;nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF ENSG00000178965|ENST00000326665|ERICH3 ENSG00000178965|ENST00000326665|ERICH3 MSMS AL20221201_MKP_PDAC_01 4 391.5449829101562 3 391.543432 1171.60847 NaN NaN NaN NaN NaN NaN NaN 21.155 1 18.462 17.962 18.962 -2.693 0 0 0 0.93933 1 11301 11301 1.2148 0.25256 1 69295 8788 46178 47201 80857 80857 0.02952772089656719 VGLTDGLV 8 Unmodified _VGLTDGLV_ 0 0 0 REV__ENSG00000162409|ENST00000371244|PRKAA2 REV__ENSG00000162409|ENST00000371244|PRKAA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.1622009277344 2 387.223811 772.433069 0.017629 6.8262E-06 4.0851 0.0015818 4.1027 0.0015887 387.2253733437525 35.868 0.17965 35.868 35.796 35.975 0 14 8 2 0 0 0 8.7369 1 19040 19040 0.69038 0 1 3444200 + 69296 21643 46179 47202 80858 80858 0.03775022086108493 VGLTDGLV 8 Unmodified _VGLTDGLV_ 0 0 0 REV__ENSG00000162409|ENST00000371244|PRKAA2 REV__ENSG00000162409|ENST00000371244|PRKAA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 387.223811 772.433069 -0.17805 -6.8946E-05 2.8039 0.0010857 2.6258 0.0010168 387.22474704952884 35.716 0.18242 35.741 35.682 35.864 0.024967 -0.063796 -0.00022865 NaN 0.69038 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 7197800 + 69297 21643 46179 47202 0.03775022086108493 VGLTGFHTFL 10 Unmodified _VGLTGFHTFL_ 0 0 0 ENSG00000188706|ENST00000357166|ZDHHC9 ENSG00000188706|ENST00000357166|ZDHHC9 ENSG00000188706|ENST00000357166|ZDHHC9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5347595214844 3 364.53432 1090.58113 1.1917 0.00043441 -0.57687 -0.00021029 0.61481 0.00022412 364.5340789380311 44.053 0.20969 39.288 39.171 39.381 -4.7648 23 13 2 0 0 0 0.60623 1 26788 26788 9.544 0.56773 1 12372000 69298 9686 46180 47203 80859 80859 0.039463333399453404 VGLTSKDSWY 10 Unmodified _VGLTSKDSWY_ 0 0 0 ENST00000594682.6_1_19:53122308-53193715:-|nuORF ENST00000594682.6_1_19:53122308-53193715:-|nuORF ENST00000594682.6_1_19:53122308-53193715:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2728271484375 2 578.287671 1154.56079 -0.095457 -5.5202E-05 0.52383 0.00030293 0.42838 0.00024773 578.2881904526325 29.32 0.32821 29.32 29.161 29.489 0 45 15 5 0 0 0 0.68844 1 15120 15120 4.3292 0.38484 1 12349000 69299 15751 46181 47204 80860 80860 -0.010308821105354582 VGLVLRWKK 9 Unmodified _VGLVLRWKK_ 0 0 0 ENST00000392097.4_1_1:169455486-169455657:+|nuORF ENST00000392097.4_1_1:169455486-169455657:+|nuORF ENST00000392097.4_1_1:169455486-169455657:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 549.8595581054688 2 549.860944 1097.70733 NaN NaN NaN NaN NaN NaN NaN 14.95 1 12.422 11.922 12.922 -2.5273 0 0 0 0.82396 1 7630 7630 4.756 1.1595 1 69300 12665 46182 47205 80861 80861 0.1623888463586809 VGLVLVLLRGL 11 Unmodified _VGLVLVLLRGL_ 0 0 0 nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3958740234375 2 576.397359 1150.78016 NaN NaN NaN NaN NaN NaN NaN 85.719 1 85.719 85.219 86.219 0 0 0 0 0.94301 1 47496 47496 0.35063 0 1 69301 1240 46183 47206 80862 80862 0.21080593638657774 VGLVQVPQ 8 Unmodified _VGLVQVPQ_ 0 0 0 ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;SLC26A8|p.N842Kfs*44|1|0.18|ENSG00000112053|chr6:35944287-35944288|-/T|frameshift_variant;ENSG00000112053|ENST00000490799|SLC26A8 ENST00000486155.1_1_6:35928714-35992326:-|nuORF ENST00000486155.1_1_6:35928714-35992326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.5004272460938 1 839.498529 838.491253 -0.11878 -9.9719E-05 -0.11401 -9.571E-05 -0.23279 -0.00019543 839.4988615045028 67.117 0.36238 66.634 66.459 66.822 -0.48269 36 16 3 0 0 0 0.72953 1 36620 36620 14.582 0 1 6475500 69302 2853 46184 47207 80863 80863 0.06554703731376321 VGLVQVPQ 8 Unmodified _VGLVQVPQ_ 0 0 0 ENST00000486155.1_1_6:35928714-35992326:-|nuORF;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;SLC26A8|p.N842Kfs*44|1|0.18|ENSG00000112053|chr6:35944287-35944288|-/T|frameshift_variant;ENSG00000112053|ENST00000490799|SLC26A8 ENST00000486155.1_1_6:35928714-35992326:-|nuORF ENST00000486155.1_1_6:35928714-35992326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 839.4989013671875 1 839.498529 838.491253 1.1069 0.00092924 -0.85767 -0.00072001 0.24923 0.00020923 839.4978294977388 66.604 0.22468 66.613 66.48 66.704 0.0095596 15 10 2 0 0 0 0.72953 1 36543 36543 14.582 0 1 4103300 69303 2853 46184 47207 80864 80864 0.06554703731376321 VGLYFVYKM 9 Unmodified _VGLYFVYKM_ 0 0 0 REV__ENSG00000165076|ENST00000350549|PRSS37 REV__ENSG00000165076|ENST00000350549|PRSS37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8685607910156 3 373.868423 1118.58344 0.039952 1.4937E-05 0.37118 0.00013877 0.41114 0.00015371 373.86847572853003 17.944 0.41137 17.95 17.741 18.152 0.0060463 51 27 2 0 0 0 0.53666 1 9110 9110 2.9952 0.49676 1 1092700 + 69304 21975 46185 47208 80865 80865 0.02889045753386199 VGLYFVYKM 9 Unmodified _VGLYFVYKM_ 0 0 0 REV__ENSG00000165076|ENST00000350549|PRSS37 REV__ENSG00000165076|ENST00000350549|PRSS37 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.868423 1118.58344 -0.56126 -0.00020984 0.69369 0.00025935 0.13243 4.9512E-05 373.86872747475365 17.914 0.23041 17.927 17.791 18.021 0.013865 -0.011488 0.00023263 NaN 2.9952 48 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1001300 + 69305 21975 46185 47208 0.02889045753386199 VGLYRERSF 9 Unmodified _VGLYRERSF_ 0 0 0 nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENST00000526982.1_1_11:209264-210619:+|nuORF;nc|ENSG00000177963|Q9NPQ8-2|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A nc|ENSG00000177963|Q9NPQ8-4|RIC8A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2060852050781 3 376.204974 1125.59309 NaN NaN NaN NaN NaN NaN NaN 19.186 1 19.194 18.694 19.694 0.0078487 0 0 0 0.85737 1 9751 9751 0.26902 0 1 69306 16410 46186 47209 80866 80866 0.035319500831292316 VGLYRRALDP 10 Unmodified _VGLYRRALDP_ 0 0 0 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 REV__nc|ENSG00000091490|Q68CR1-3|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2251281738281 3 387.224257 1158.65094 -0.5242 -0.00020298 0.207 8.0155E-05 -0.3172 -0.00012283 387.2245332639688 19.07 0.12595 19.07 19.004 19.13 0 17 7 3 0 0 0 0.71276 1 9508 9508 0.62683 0 1 1387000 + 69307 17892 46187 47210 80867 80867 0.07796212008565817 VGMEELWSF 9 Unmodified _VGMEELWSF_ 0 0 0 REV__ENSG00000159147|ENST00000303071|DONSON REV__ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2503051757812 2 549.252243 1096.48993 1.3654 0.00074994 -2.2125 -0.0012152 -0.84708 -0.00046526 549.2507933861148 47.429 0.49282 42.195 42.057 42.55 -5.2339 37 28 2 0 0 0 0.052168 1 29403 29403 44.407 6.2314 1 22356000 + 69308 21462 46188 47211 80868 80868 -0.05445298419704159 VGMFIFFF 8 Unmodified _VGMFIFFF_ 0 0 0 REV__ENSG00000205329|ENST00000641740|OR6C3 REV__ENSG00000205329|ENST00000641740|OR6C3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.283447265625 2 504.2566 1006.49865 -0.34604 -0.00017449 1.9304 0.0009734 1.5843 0.00079891 504.7588517454489 70.202 0.3189 69.723 69.615 69.934 -0.47903 31 15 3 0 0 0 8.7369 1 38386 38386 6.3541 3.7766 1 1864300 + 69309 24221 46189 47212 80869 80869 -0.004342799925439067 VGMGLGRGA 9 Unmodified _VGMGLGRGA_ 0 0 0 ENST00000434030.1_1_3:50311077-50311539:+|nuORF;ENST00000419007.5_1_3:50311077-50311539:+|nuORF ENST00000434030.1_1_3:50311077-50311539:+|nuORF ENST00000434030.1_1_3:50311077-50311539:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.2215576171875 2 409.22108 816.427607 NaN NaN NaN NaN NaN NaN NaN 86.45 1 80.274 79.774 80.774 -6.1757 0 0 0 0.7243 1 56992 56992 8.5933 2.8329 1 69310 13083 46190 47213 80870 80870 0.012050200226326524 VGMKLASC 8 Unmodified _VGMKLASC_ 0 0 0 CNNM4|p.R50K|1|0.05|ENSG00000158158|chr2:96761148-96761148|G/A|missense_variant CNNM4|p.R50K|1|0.05|ENSG00000158158|chr2:96761148-96761148|G/A|missense_variant CNNM4|p.R50K|1|0.05|ENSG00000158158|chr2:96761148-96761148|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 404.708251953125 2 404.706417 807.398281 NaN NaN NaN NaN NaN NaN NaN 37.713 1 33.344 32.844 33.844 -4.3689 0 0 0 0.97444 1 22168 22168 2.5775 0.27475 1 69311 133 46191 47214 80871 80871 -0.01312260317865821 VGMLDPPRPEV 11 Unmodified _VGMLDPPRPEV_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3 nc|ENSG00000074370|Q93084-4|ATP2A3 nc|ENSG00000074370|Q93084-4|ATP2A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8801574707031 3 403.881391 1208.62234 0.080905 3.2676E-05 -2.6112 -0.0010546 -2.5303 -0.001022 403.880103287215 59.685 0.19913 59.632 59.535 59.734 -0.053059 14 9 2 0 0 0 0.69316 1 32556 32556 2.2527 1.0379 1 2152000 69312 1125 46192 47215 80872 80872 0.026377263170843435 VGMLIGDTSI 10 Unmodified _VGMLIGDTSI_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-5|BLTP1 REV__nc|ENSG00000138688|Q2LD37-5|BLTP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2702941894531 2 503.267893 1004.52123 0.55087 0.00027724 4.0772 0.0020519 4.6281 0.0023292 503.7716092392456 48.071 0.11811 48.071 48.014 48.132 0 7 5 2 0 0 0 0.22149 1 26369 26369 14.838 8.1151 1 1844800 + 69313 29661 46193 47216 80873 80873 0.019152746144072808 VGMLMFILR 9 Unmodified _VGMLMFILR_ 0 0 0 SLITRK1|p.V640M|1|0.2|ENSG00000178235|chr13:83879590-83879590|C/T|missense_variant SLITRK1|p.V640M|1|0.2|ENSG00000178235|chr13:83879590-83879590|C/T|missense_variant SLITRK1|p.V640M|1|0.2|ENSG00000178235|chr13:83879590-83879590|C/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.7698974609375 2 540.308841 1078.60313 0.55553 0.00030016 -1.1265 -0.00060864 -0.57093 -0.00030848 540.3085043606964 43.06 0.2731 38.296 38.146 38.419 -4.7648 28 17 2 0 0 0 0.21302 1 26069 26069 9.3474 9.3474 1 17339000 69314 30169 46194 47217 80874 80874 0.06697098492509213 VGMPLLPC 8 Unmodified _VGMPLLPC_ 0 0 0 ENST00000486438.1_1_17:40123824-40125939:+|nuORF ENST00000486438.1_1_17:40123824-40125939:+|nuORF ENST00000486438.1_1_17:40123824-40125939:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2200622558594 2 415.21916 828.423767 NaN NaN NaN NaN NaN NaN NaN 44.547 1 44.232 43.732 44.732 -0.31585 0 0 0 0.97444 1 23771 23771 2.8892 0.31174 1 69315 14185 46195 47218 80875 80875 0.0026921420454755207 VGMQRAGL 8 Unmodified _VGMQRAGL_ 0 0 0 REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF REV__ENST00000560192.5_1_15:91447248-91454469:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.227783203125 2 416.228905 830.443257 NaN NaN NaN NaN NaN NaN NaN 32.887 1 29.031 28.531 29.531 -3.8562 0 0 0 0.73801 1 18804 18804 26.341 3.1929 1 + 69316 28826 46196 47219 80876 80876 0.02125306539687699 VGMRPHASEL 10 Unmodified _VGMRPHASEL_ 0 0 0 REV__ENSG00000161904|ENST00000293760|LEMD2 REV__ENSG00000161904|ENST00000293760|LEMD2 MSMS AL20221201_MKP_PDAC_01 4 366.1910705566406 3 366.190447 1095.54951 NaN NaN NaN NaN NaN NaN NaN 23.308 1 20.53 20.03 21.03 -2.7784 0 0 0 0.91523 1 12609 12609 3.8763 0 1 + 69317 21609 46197 47220 80877 80877 0.005560173143521752 VGMSKWRLCF 10 Unmodified _VGMSKWRLCF_ 0 0 0 REV__nc|ENSG00000165688|Q10713-2|PMPCA REV__nc|ENSG00000165688|Q10713-2|PMPCA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.8766784667969 3 409.543945 1225.61 NaN NaN NaN NaN NaN NaN NaN 18.113 1 18.119 17.619 18.619 0.0060463 0 0 0 0.98914 1 9165 9165 0.77653 0 1 + 69318 29757 46198 47221 80878 80878 0.006224113730695535 VGMWEDDRDE 10 Unmodified _VGMWEDDRDE_ 0 0 0 REV__ENSG00000144668|ENST00000264741|ITGA9 REV__ENSG00000144668|ENST00000264741|ITGA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1251.496826171875 1 1251.49464 1250.48737 0.67185 0.00084082 -0.49726 -0.00062232 0.17459 0.0002185 1251.4946657559856 69.915 0.056587 63.739 63.706 63.763 -6.1757 4 2 2 0 0 0 0.72196 1 45676 45676 0.45834 0 1 18544000 + 69319 20723 46199 47222 80879 80879 -0.12785798615300337 VGMWEWKIC 9 Unmodified _VGMWEWKIC_ 0 0 0 ENST00000368178.3_1_1:157716528-157737507:-|nuORF ENST00000368178.3_1_1:157716528-157737507:-|nuORF ENST00000368178.3_1_1:157716528-157737507:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5181274414062 3 384.517396 1150.53036 NaN NaN NaN NaN NaN NaN NaN 14.831 1 14.801 14.301 15.301 -0.030868 0 0 0 0.85737 1 7242 7242 0.26902 0 1 69320 12258 46200 47223 80880 80880 -0.03888655300920618 VGNAPLLAL 9 Unmodified _VGNAPLLAL_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000461189.1_1_2:230659893-230661399:-|nuORF nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 867.5307006835938 1 867.52983 866.522553 -0.6158 -0.00053423 0.68878 0.00059754 0.07298 6.3312E-05 867.5304563150672 76.635 0.45847 76.156 75.955 76.413 -0.47945 77 28 4 0 0 0 0.39863 1 42082 42082 12.532 3.1841 1 23156000 69321 6277 46201 47224 80881 80881 0.08395276765452309 VGNATTAQL 9 Unmodified _VGNATTAQL_ 0 0 0 ENST00000433031.1_1_7:57216803-57217046:-|nuORF ENST00000433031.1_1_7:57216803-57217046:-|nuORF ENST00000433031.1_1_7:57216803-57217046:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.7344360351562 2 437.735074 873.455596 -0.15098 -6.6089E-05 -0.56215 -0.00024607 -0.71313 -0.00031216 437.73497319712465 23.097 0.40287 23.097 22.861 23.264 0 27 21 2 0 0 0 0.51218 1 11763 11763 6.7232 0 1 304180 69322 13284 46202 47225 80882 80882 0.01380621483701816 VGNDISFT 8 Unmodified _VGNDISFT_ 0 0 0 REV__ENSG00000174844|ENST00000495027|DNAH12 REV__ENSG00000174844|ENST00000495027|DNAH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 855.41943359375 1 852.409774 851.402498 0.53071 0.00045239 0.14946 0.0001274 0.68018 0.00057979 852.4098561511876 36.644 0.40841 36.644 36.388 36.796 0 49 19 4 0 0 0 0.80975 1 19451 19451 0.79363 0 1 13989000 + 69323 22822 46203 47226 80883 80883 -0.029147562989351172 VGNEHLGETY 10 Unmodified _VGNEHLGETY_ 0 0 0 REV__ENSG00000110066|ENST00000304363|KMT5B REV__ENSG00000110066|ENST00000304363|KMT5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.5084533691406 3 373.508611 1117.504 -0.35925 -0.00013418 1.1086 0.00041407 0.74935 0.00027989 373.5087513482012 22.345 0.26442 22.345 22.264 22.528 0 29 12 3 0 0 0 0.66569 1 11356 11356 3.5871 0 1 4075400 + 69324 18688 46204 47227 80884 80884 -0.05004929667029501 VGNEHLGETY 10 Unmodified _VGNEHLGETY_ 0 0 0 REV__ENSG00000110066|ENST00000304363|KMT5B REV__ENSG00000110066|ENST00000304363|KMT5B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 373.508611 1117.504 -0.35925 -0.00013418 1.1086 0.00041407 0.74935 0.00027989 373.5087513482012 22.345 0.26442 22.345 22.264 22.528 0 -0.055875 0.00073075 NaN 3.5871 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4075400 + 69325 18688 46204 47227 -0.05004929667029501 VGNEHLGETY 10 Unmodified _VGNEHLGETY_ 0 0 0 REV__ENSG00000110066|ENST00000304363|KMT5B REV__ENSG00000110066|ENST00000304363|KMT5B MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 373.508611 1117.504 0.48662 0.00018175 0.19594 7.3187E-05 0.68256 0.00025494 373.50883864362083 25.34 0.31598 22.457 22.309 22.625 -2.8831 0.055875 -0.00029191 NaN 3.5871 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2948500 + 69326 18688 46204 47227 -0.05004929667029501 VGNGFRGCMD 10 Unmodified _VGNGFRGCMD_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2225952148438 2 528.223494 1054.43243 NaN NaN NaN NaN NaN NaN NaN 24.644 1 24.644 24.144 25.144 0 0 0 0 0.97592 1 12602 12602 3.2813 0.28607 1 69327 1378 46205 47228 80885 80885 -0.09260463896907822 VGNHSVALA 9 Unmodified _VGNHSVALA_ 0 0 0 REV__ENSG00000149256|ENST00000278550|TENM4 REV__ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2382202148438 2 434.237784 866.461016 -0.40389 -0.00017538 -0.059663 -2.5908E-05 -0.46355 -0.00020129 434.2379230405811 26.446 0.22815 26.446 26.323 26.551 0 14 10 2 0 0 0 0.070838 1 13588 13588 39.957 0 1 813630 + 69328 20987 46206 47229 80886 80886 0.022443450661739917 VGNKEEAA 8 Unmodified _VGNKEEAA_ 0 0 0 REV__ENSG00000111817|ENST00000644252|DSE REV__ENSG00000111817|ENST00000644252|DSE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2057189941406 2 409.20615 816.397747 NaN NaN NaN NaN NaN NaN NaN 17.335 1 17.34 16.84 17.84 0.0050564 0 0 0 0.97444 1 8740 8740 2.5775 0 1 + 69329 18770 46207 47230 80887 80887 -0.017796404417254053 VGNKWRGK 8 Unmodified _VGNKWRGK_ 0 0 0 REV__nc|ENSG00000136286|B0I1T2-2|MYO1G REV__nc|ENSG00000136286|B0I1T2-2|MYO1G MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2906188964844 2 472.774868 943.535184 0.55719 0.00026342 -2.6913 -0.0012724 -2.1341 -0.0010089 472.77351171532916 64.796 0.3858 64.311 64.125 64.51 -0.48512 31 17 3 0 0 0 8.7369 1 35453 35453 2.5775 1.7838 1 2084700 + 69330 27675 46208 47231 80888 80888 0.06115732948364894 VGNLPEYLPF 10 Unmodified _VGNLPEYLPF_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.802978515625 2 574.802957 1147.59136 0.55616 0.00031968 -0.12791 -7.3522E-05 0.42825 0.00024616 574.8027406926791 93.885 0.35464 93.464 93.148 93.503 -0.42044 22 15 2 0 0 0 0.70951 1 51309 51309 1.8442 0 1 572600 69331 2794 46209 47232 80889 80889 0.023468962745027966 VGNLPEYLPF 10 Unmodified _VGNLPEYLPF_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 574.802957 1147.59136 1.9007 0.0010925 0.7056 0.00040558 2.6063 0.0014981 574.8032792236565 93.255 0.35178 93.278 93.052 93.404 0.022987 -0.093113 0.0003121 NaN 1.8442 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1504800 69332 2794 46209 47232 0.023468962745027966 VGNLRRSHLV 10 Unmodified _VGNLRRSHLV_ 0 0 0 ENSG00000182324|ENST00000342291|KCNJ14 ENSG00000182324|ENST00000342291|KCNJ14 ENSG00000182324|ENST00000342291|KCNJ14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2319030761719 3 384.231634 1149.67307 NaN NaN NaN NaN NaN NaN NaN 19.236 1 19.244 18.744 19.744 0.0078487 0 0 0 0.99091 1 9779 9779 1.9064 0 1 69333 9044 46210 47233 80890 80890 0.10422436476960684 VGNLSNFISF 10 Unmodified _VGNLSNFISF_ 0 0 0 ENST00000555952.5_1_14:52037087-52045744:+|nuORF ENST00000555952.5_1_14:52037087-52045744:+|nuORF ENST00000555952.5_1_14:52037087-52045744:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.525634765625 3 366.525713 1096.55531 NaN NaN NaN NaN NaN NaN NaN 23.702 1 23.702 23.202 24.202 0 0 0 0 0.99091 1 12090 12090 0.69767 0.23933 1 69334 15235 46211 47234 80891 80891 0.010894390976545765 VGNLSNFISF 10 Unmodified _VGNLSNFISF_ 0 0 0 ENST00000555952.5_1_14:52037087-52045744:+|nuORF ENST00000555952.5_1_14:52037087-52045744:+|nuORF ENST00000555952.5_1_14:52037087-52045744:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5264282226562 3 366.525713 1096.55531 NaN NaN NaN NaN NaN NaN NaN 23.941 1 23.941 23.441 24.441 0 0 0 0 0.99091 1 12217 12217 0.69767 0.29695 1 69335 15235 46211 47234 80892 80892 0.010894390976545765 VGNLYSLELF 10 Unmodified _VGNLYSLELF_ 0 0 0 REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8073120117188 2 577.808239 1153.60193 0.47279 0.00027318 -1.9136 -0.0011057 -1.4408 -0.00083253 577.8064892007015 93.953 0.50743 93.533 93.348 93.856 -0.42043 56 26 4 0 0 0 0.57893 1 51397 51397 12.241 0 1 2773600 + 69336 19310 46212 47235 80893 80893 0.03126878928947008 VGNNAVFLVLY 11 Unmodified _VGNNAVFLVLY_ 0 0 0 ENST00000554099.1_1_14:82382757-82383015:+|nuORF ENST00000554099.1_1_14:82382757-82383015:+|nuORF ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.83740234375 2 604.837331 1207.66011 0.40609 0.00024562 -1.3065 -0.00079021 -0.90039 -0.00054459 604.8369323981482 70.913 0.35064 70.436 70.308 70.659 -0.47735 20 15 2 0 0 0 0.63851 1 38837 38837 9.3831 0 1 705350 69337 15203 46213 47236 80894 80894 0.06458560574242256 VGNNAVFLVLY 11 Unmodified _VGNNAVFLVLY_ 0 0 0 ENST00000554099.1_1_14:82382757-82383015:+|nuORF ENST00000554099.1_1_14:82382757-82383015:+|nuORF ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 604.837331 1207.66011 0.84291 0.00050982 -0.10537 -6.3729E-05 0.73754 0.00044609 604.8373401906698 70.627 0.17109 70.663 70.549 70.72 0.035515 0.11344 0.00064389 NaN 9.3831 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1084900 69338 15203 46213 47236 0.06458560574242256 VGNPHAGSA 9 Unmodified _VGNPHAGSA_ 0 0 0 REV__ENST00000258169.8_1_16:82182192-82182318:-|nuORF REV__ENST00000258169.8_1_16:82182192-82182318:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.1983947753906 2 405.198659 808.382765 NaN NaN NaN NaN NaN NaN NaN 15.693 1 15.693 15.193 16.193 0 0 0 0 0.84564 1 7583 7583 2.0598 0.21551 1 + 69339 24937 46214 47237 80895 80895 -0.029090875190490806 VGNPLVIL 8 Unmodified _VGNPLVIL_ 0 0 0 REV__ENSG00000103742|ENST00000352385|IGDCC4 REV__ENSG00000103742|ENST00000352385|IGDCC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.7669677734375 2 412.765646 823.516739 1.233 0.00050893 0.60421 0.0002494 1.8372 0.00075833 412.76618782505136 37.103 0.72366 32.819 32.267 32.991 -4.2835 50 44 2 0 0 0 0.80676 1 21769 21769 2.5775 0 1 12866000 + 69340 18324 46215 47238 80896 80896 0.09792178253815109 VGNQIEAQI 9 Unmodified _VGNQIEAQI_ 0 0 0 REV__ENSG00000164022|ENST00000672341|AIMP1 REV__ENSG00000164022|ENST00000672341|AIMP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.7835388183594 2 486.261456 970.50836 0.61542 0.00029926 1.6303 0.00079277 2.2458 0.001092 486.26224662484015 18.011 0.22449 15.399 15.297 15.521 -2.612 18 14 2 0 0 0 0.21473 1 9412 9412 4.3292 0.73274 1 1853800 + 69341 21848 46216 47239 80897 80897 0.021925795465108422 VGNSLREYKL 10 Unmodified _VGNSLREYKL_ 0 0 0 REV__nc|ENSG00000006715|P49754-2|VPS41 REV__nc|ENSG00000006715|P49754-2|VPS41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5564270019531 3 393.555784 1177.64552 -0.0062722 -2.4685E-06 0.233 9.1698E-05 0.22673 8.923E-05 393.5558680923166 20.286 0.22006 20.297 20.168 20.388 0.010551 44 12 4 0 0 0 0.20962 1 10307 10307 22.775 4.4019 1 20552000 + 69342 16997 46217 47240 80898 80898 0.0638048842608896 VGNVGFDP 8 Unmodified _VGNVGFDP_ 0 0 0 REV__nc|ENSG00000081760|Q86V21-2|AACS REV__nc|ENSG00000081760|Q86V21-2|AACS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.6979064941406 2 402.697961 803.381368 NaN NaN NaN NaN NaN NaN NaN 14.287 1 14.287 13.787 14.787 0 0 0 0 0.97444 1 6780 6780 0.79363 0 1 + 69343 17694 46218 47241 80899 80899 -0.02818721607820862 VGNVPDVY 8 Unmodified _VGNVPDVY_ 0 0 0 ENSG00000144451|ENST00000331683|SPAG16;nc|ENSG00000144451|Q8N0X2-4|SPAG16;nc|ENSG00000144451|Q8N0X2-5|SPAG16;ENST00000414961.2_1_2:214162027-214228821:+|nuORF;nc|ENSG00000144451|Q8N0X2-3|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 ENSG00000144451|ENST00000331683|SPAG16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.4326171875 1 862.430509 861.423233 0.069681 6.0095E-05 0.45974 0.0003965 0.52942 0.00045659 862.4309394656971 69.792 0.25104 69.792 69.636 69.887 0 26 11 3 0 0 0 0.80232 1 38932 38932 5.2307 2.6532 1 1532900 69344 5610 46219 47242 80900 80900 -0.01302165919298659 VGNWLLHQ 8 Unmodified _VGNWLLHQ_ 0 0 0 ENST00000528485.1_1_11:59496051-59496324:+|nuORF ENST00000528485.1_1_11:59496051-59496324:+|nuORF ENST00000528485.1_1_11:59496051-59496324:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.6368408203125 1 966.515577 965.5083 0.38742 0.00037445 -0.64447 -0.00062289 -0.25705 -0.00024844 966.5146700147073 86.702 0.32375 86.199 86.02 86.344 -0.50318 26 12 3 0 0 0 0.80975 1 47386 47386 0.79363 0 1 1839700 69345 14858 46220 47243 80901 80901 0.024166243371723795 VGNYHMGFLV 10 Unmodified _VGNYHMGFLV_ 0 0 0 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 ENSG00000113318|ENST00000265081|MSH3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5225830078125 3 379.523427 1135.54845 0.63714 0.00024181 -2.4294 -0.000922 -1.7922 -0.00068019 379.5225063743894 14.759 0.032746 12.232 12.21 12.243 -2.5273 10 6 2 0 0 0 0.23895 1 7522 7522 4.1895 0 1 1065600 69346 2957 46221 47244 80902 80902 -0.013901970545475706 VGPAHGPVL 9 Unmodified _VGPAHGPVL_ 0 0 0 ENST00000474481.1_1_1:1420233-1421362:+|nuORF;ENST00000485748.5_1_1:1420203-1425183:+|nuORF ENST00000474481.1_1_1:1420233-1421362:+|nuORF ENST00000474481.1_1_1:1420233-1421362:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7456359863281 2 423.745245 845.475937 1.4562 0.00061708 0.52827 0.00022385 1.9845 0.00084093 423.7452871149861 47.872 0.54212 42.638 42.279 42.821 -5.2339 68 32 3 0 0 0 0.22317 1 29740 29740 20.871 0 1 32058000 69347 13939 46222 47245 80903 80903 0.04701836934191306 VGPAKVIV 8 Unmodified _VGPAKVIV_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.7626647949219 2 391.760364 781.506175 NaN NaN NaN NaN NaN NaN NaN 44.768 1 44.746 44.246 45.246 -0.022064 0 0 0 0.97444 1 24028 24028 0.79363 0 1 69348 2642 46223 47246 80904 80904 0.10668195599384944 VGPAKVIV 8 Unmodified _VGPAKVIV_ 0 0 0 ENSG00000109320|ENST00000226574|NFKB1;nc|ENSG00000109320|P19838|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 ENSG00000109320|ENST00000226574|NFKB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.7619323730469 2 391.760364 781.506175 NaN NaN NaN NaN NaN NaN NaN 44.953 1 44.931 44.431 45.431 -0.022064 0 0 0 0.97444 1 24132 24132 0.79363 0 1 69349 2642 46223 47246 80905 80905 0.10668195599384944 VGPALDPF 8 Unmodified _VGPALDPF_ 0 0 0 REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2175903320312 2 408.218529 814.422505 NaN NaN NaN NaN NaN NaN NaN 16.287 1 16.292 15.792 16.792 0.0050564 0 0 0 0.97444 1 8160 8160 2.8892 2.0956 1 + 69350 27292 46224 47247 80906 80906 0.007870394316682905 VGPALSIT 8 Unmodified _VGPALSIT_ 0 0 0 REV__ENST00000529280.5_1_11:74992876-74995312:-|nuORF REV__ENST00000529280.5_1_11:74992876-74995312:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2269287109375 2 379.226354 756.438155 0.71167 0.00026988 -0.80042 -0.00030354 -0.08875 -3.3656E-05 379.22557270930935 26.201 0.39236 23.25 23.13 23.522 -2.9511 31 21 2 0 0 0 0.80143 1 14367 14367 5.7604 0.52976 1 7184000 + 69351 28421 46225 47248 80907 80907 0.05019325948694586 VGPAPGGCR 9 Unmodified _VGPAPGGCR_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MSMS AL20221201_MKP_PDAC_01 4 407.2058410644531 2 407.20543 812.396307 NaN NaN NaN NaN NaN NaN NaN 94.775 1 88.599 88.099 89.099 -6.1757 0 0 0 0.84369 1 62776 62776 2.3027 1.5091 1 + 69352 19711 46226 47249 80908 80908 -0.017395530114640678 VGPARPGP 8 Unmodified _VGPARPGP_ 0 0 0 ENST00000493483.5_1_1:33799498-33815372:-|nuORF;ENST00000485928.5_1_1:33797943-33815375:-|nuORF ENST00000493483.5_1_1:33799498-33815372:-|nuORF ENST00000493483.5_1_1:33799498-33815372:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.180908203125 2 375.716488 749.418422 -0.36302 -0.00013639 1.463 0.00054966 1.0999 0.00041327 375.7167513824073 22.35 0.15759 22.35 22.245 22.402 0 12 7 2 0 0 0 8.7369 1 11329 11329 0.79363 0 1 477690 69353 14175 46227 47250 80909 80909 0.0336899472862342 VGPARRLS 8 Unmodified _VGPARRLS_ 0 0 0 ENST00000288014.6_1_14:24025414-24025621:+|nuORF ENST00000288014.6_1_14:24025414-24025621:+|nuORF ENST00000288014.6_1_14:24025414-24025621:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.515625 1 855.515911 854.508634 0.55498 0.00047479 0.0067828 5.8028E-06 0.56176 0.00048059 855.515708525572 79.16 0.42973 79.215 79.015 79.445 0.054977 36 16 3 0 0 0 0.80975 1 43764 43764 0.79363 0 1 13267000 69354 11450 46228 47251 80910 80910 0.07556044057048439 VGPARVHL 8 Unmodified _VGPARVHL_ 0 0 0 nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC;ENST00000414034.7_2_17:40341723-40342334:-|nuORF nc|ENSG00000167925|Q8N2G8-3|GHDC nc|ENSG00000167925|Q8N2G8-3|GHDC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7610473632812 2 424.758687 847.502821 NaN NaN NaN NaN NaN NaN NaN 50.109 1 50.06 49.56 50.56 -0.048824 0 0 0 0.97444 1 27094 27094 0.79363 0 1 69355 7684 46229 47252 80911 80911 0.07296945545374456 VGPASGEL 8 Unmodified _VGPASGEL_ 0 0 0 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 REV__nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2118835449219 2 365.192511 728.370469 0.3436 0.00012548 3.8276 0.0013978 4.1712 0.0015233 365.19380311773614 40.265 0.18991 40.27 40.212 40.402 0.0050583 10 8 2 0 0 0 8.7369 1 21444 21444 0.79363 0 1 818300 + 69356 23122 46230 47253 80912 80912 -0.004581239820822702 VGPCAGGG 8 Unmodified _VGPCAGGG_ 0 0 0 ENST00000481195.5_1_5:133561503-133561806:-|nuORF ENST00000481195.5_1_5:133561503-133561806:-|nuORF ENST00000481195.5_1_5:133561503-133561806:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.2728271484375 1 617.271172 616.263896 0.6955 0.00042931 0.40407 0.00024942 1.0996 0.00067873 617.2710838076014 49.312 0.11687 49.312 49.277 49.393 0 8 5 2 0 0 0 0.80975 1 27145 27145 0.79363 0 1 3079100 69357 14077 46231 47254 80913 80913 -0.0595857774826527 VGPCLIIW 8 Unmodified _VGPCLIIW_ 0 0 0 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 ENSG00000021488|ENST00000023064|SLC7A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.754638671875 2 450.754224 899.493896 0.39866 0.0001797 0.32204 0.00014516 0.7207 0.00032486 450.7542901623345 81.183 0.34605 81.183 81.024 81.37 0 36 16 3 0 0 0 0.80975 1 45019 45019 0.79363 0 1 1550700 69358 525 46232 47255 80914 80914 0.040128358646711604 VGPCPLCL 8 Unmodified _VGPCPLCL_ 0 0 0 REV__ENST00000435366.2_2_20:33864602-33864731:-|nuORF REV__ENST00000435366.2_2_20:33864602-33864731:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2041625976562 2 401.20351 800.392467 -0.37468 -0.00015032 3.4527 0.0013852 3.078 0.0012349 401.20414693692305 41.812 0.26665 41.81 41.701 41.968 -0.0017929 16 12 3 0 0 0 0.80624 1 22386 22386 2.8892 0 1 4132100 + 69359 27018 46233 47256 80915 80915 -0.01571358829539804 VGPCSLYVWS 10 Unmodified _VGPCSLYVWS_ 0 0 0 REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF REV__ENST00000565912.1_1_16:57411753-57412206:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8135986328125 2 555.76806 1109.52157 1.0559 0.00058686 2.2408 0.0012454 3.2968 0.0018322 555.7695924618372 65.793 0.22015 65.803 65.69 65.911 0.0095596 16 10 2 0 0 0 0.23227 1 36119 36119 10.824 1.4765 1 1844800 + 69360 28916 46234 47257 80916 80916 -0.028813056657554625 VGPDMVAH 8 Unmodified _VGPDMVAH_ 0 0 0 ENST00000311841.7_2_1:54662114-54665667:-|nuORF ENST00000311841.7_2_1:54662114-54665667:-|nuORF ENST00000311841.7_2_1:54662114-54665667:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.1998291015625 2 413.199813 824.385073 NaN NaN NaN NaN NaN NaN NaN 16.799 1 16.799 16.299 17.299 0 0 0 0 0.97444 1 8226 8226 0.79363 0 1 69361 11698 46235 47258 80917 80917 -0.03414375105592171 VGPEDILVL 9 Unmodified _VGPEDILVL_ 0 0 0 REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7798767089844 2 477.778951 953.543348 0.25616 0.00012239 1.1275 0.00053871 1.3837 0.00066109 477.77926068837684 78.594 0.16711 78.594 78.53 78.698 0 9 7 2 0 0 0 0.49272 1 43672 43672 7.9102 0 1 448870 + 69362 28387 46236 47259 80918 80918 0.06471822354478718 VGPEDILVL 9 Unmodified _VGPEDILVL_ 0 0 0 REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF REV__ENST00000527285.1_1_11:18728401-18728901:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 477.778951 953.543348 0.25616 0.00012239 1.1275 0.00053871 1.3837 0.00066109 477.77926068837684 78.594 0.16711 78.594 78.53 78.698 0 0 0 NaN 7.9102 9 7 2 NaN NaN NaN NaN 0 NaN NaN 0 448870 + 69363 28387 46236 47259 0.06471822354478718 VGPEFGKGIF 10 Unmodified _VGPEFGKGIF_ 0 0 0 REV__nc|ENSG00000133110|Q15063-7|POSTN REV__nc|ENSG00000133110|Q15063-7|POSTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.8584899902344 3 350.858804 1049.55458 -0.44043 -0.00015453 0.15526 5.4476E-05 -0.28516 -0.00010005 350.85871339653386 35.552 0.39528 35.33 35.151 35.546 -0.2224 53 17 4 0 0 0 0.60623 1 18575 18575 6.1918 1.2948 1 46437000 + + 69364 16870 46237 47260 80919 80919 0.031786444485987886 VGPEGGNEVR 10 Unmodified _VGPEGGNEVR_ 0 0 0 REV__ENST00000310441.11_1_X:153213499-153213556:-|nuORF REV__ENST00000310441.11_1_X:153213499-153213556:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2534484863281 2 507.254163 1012.49377 NaN NaN NaN NaN NaN NaN NaN 18.36 1 18.36 17.86 18.86 0 0 0 0 0.99248 1 9122 9122 1.4819 0.68827 1 + 69365 25415 46238 47261 80920 80920 -0.011974926016137033 VGPEVRLYF 9 Unmodified _VGPEVRLYF_ 0 0 0 REV__ENSG00000131969|ENST00000337334|ABHD12B REV__ENSG00000131969|ENST00000337334|ABHD12B MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2979125976562 2 540.297842 1078.58113 0.024076 1.3008E-05 -0.08153 -4.405E-05 -0.057454 -3.1042E-05 540.2979811708196 16.027 0.28993 13.47 13.343 13.633 -2.557 153 54 4 0 0 0 0.51218 1 8208 8208 6.7232 0 1 28268000 + 69366 19823 46239 47262 80921 80921 0.04498333339938654 VGPGADLS 8 Unmodified _VGPGADLS_ 0 0 0 REV__nc|ENSG00000064932|Q9Y2G9-3|SBNO2 REV__nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.1853332519531 2 358.184686 714.354819 NaN NaN NaN NaN NaN NaN NaN 35.4 1 35.4 34.9 35.9 0 0 0 0 0.97444 1 18714 18714 2.8892 0 1 + 69367 17365 46240 47263 80922 80922 -0.01378410499137317 VGPGELPL 8 Unmodified _VGPGELPL_ 0 0 0 ENST00000568505.6_1_16:57220242-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF ENST00000568505.6_1_16:57220242-57238444:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2273254394531 2 391.226354 780.438155 NaN NaN NaN NaN NaN NaN NaN 64.772 1 64.772 64.272 65.272 0 0 0 0 0.97444 1 36128 36128 0.79363 0 1 69368 15452 46241 47264 80923 80923 0.03915325948719328 VGPGGGGGG 9 Unmodified _VGPGGGGGG_ 0 0 0 REV__ENSG00000178233|ENST00000451188|TMEM151B REV__ENSG00000178233|ENST00000451188|TMEM151B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.26318359375 1 614.289265 613.281989 0.80607 0.00049516 2.1702 0.0013331 2.9762 0.0018283 614.2911330857731 73.325 0.10986 72.849 72.804 72.913 -0.47588 5 4 2 0 0 0 0.21889 1 40117 40117 0.6015 0 1 215770 + 69369 23031 46242 47265 80924 80924 -0.040121195019082734 VGPGPGPHV 9 Unmodified _VGPGPGPHV_ 0 0 0 REV__ENST00000558619.5_1_15:91073804-91136884:+|nuORF REV__ENST00000558619.5_1_15:91073804-91136884:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7243957519531 2 408.72177 815.428987 1.4678 0.00059993 1.9939 0.00081493 3.4617 0.0014149 408.7237358202033 95.727 0.68001 89.552 89.264 89.944 -6.1757 72 41 2 0 0 0 0.46577 2 63480 63480;63608 9.3474 2.9933 1 12863000 + 69370 28804 46243 47266 80925;80926 80925 0.01388977383044221 VGPGRRGL 8 Unmodified _VGPGRRGL_ 0 0 0 ENST00000578387.1_1_4:184019140-184020019:-|nuORF ENST00000578387.1_1_4:184019140-184020019:-|nuORF ENST00000578387.1_1_4:184019140-184020019:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2486877441406 2 406.248486 810.48242 1.1559 0.00046957 0.27479 0.00011163 1.4307 0.0005812 406.2484227742969 87.249 0.66475 81.073 80.699 81.364 -6.1757 108 36 4 0 0 0 0.80624 1 57719 57719 2.8892 0 1 253300000 69371 15541 46244 47267 80927 80927 0.06959774885569914 VGPGVLSM 8 Unmodified _VGPGVLSM_ 0 0 0 ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF ENSG00000108179|ENST00000225174|PPIF MSMS AL20221201_MKP_PDAC_01 4 379.8753356933594 2 380.207107 758.399661 NaN NaN NaN NaN NaN NaN NaN 15.032 1 12.505 12.005 13.005 -2.5273 0 0 0 0.97444 1 7680 7680 2.8892 0 1 69372 2550 46245 47268 80928 80928 0.010796970425531072 VGPGVSEF 8 Unmodified _VGPGVSEF_ 0 0 0 ENSG00000176473|ENST00000402312|WDR25 ENSG00000176473|ENST00000402312|WDR25 ENSG00000176473|ENST00000402312|WDR25 MSMS AL20221201_MKP_PDAC_01 4 396.201416015625 2 396.200336 790.386119 NaN NaN NaN NaN NaN NaN NaN 17.026 1 14.44 13.94 14.94 -2.5866 0 0 0 0.97444 1 8867 8867 2.8892 0 1 69373 8597 46246 47269 80929 80929 -0.01745837465045952 VGPHGPGF 8 Unmodified _VGPHGPGF_ 0 0 0 REV__ENST00000507952.1_1_10:75490350-75491018:+|nuORF REV__ENST00000507952.1_1_10:75490350-75491018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1951904296875 2 384.195388 766.376223 -0.24605 -9.4533E-05 0.60738 0.00023335 0.36133 0.00013882 384.19559626052455 33.685 0.21368 33.525 33.436 33.649 -0.15918 14 8 2 0 0 0 0.76859 1 17589 17589 11.114 4.7604 1 1847900 + 69374 28108 46247 47270 80930 80930 -0.016309806797607962 VGPHPGLC 8 Unmodified _VGPHPGLC_ 0 0 0 REV__ENST00000395144.6_1_3:50340916-50340985:-|nuORF REV__ENST00000395144.6_1_3:50340916-50340985:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1966247558594 2 390.197074 778.379594 NaN NaN NaN NaN NaN NaN NaN 10.492 1 8.0105 7.5105 8.5105 -2.482 0 0 0 0.97444 1 5289 5289 0.79363 0 1 + 69375 26468 46248 47271 80931 80931 -0.018460538974181873 VGPHPGLC 8 Unmodified _VGPHPGLC_ 0 0 0 REV__ENST00000395144.6_1_3:50340916-50340985:-|nuORF REV__ENST00000395144.6_1_3:50340916-50340985:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.1965942382812 2 390.197074 778.379594 NaN NaN NaN NaN NaN NaN NaN 10.664 1 8.1818 7.6818 8.6818 -2.482 0 0 0 0.97444 1 5374 5374 0.79363 0 1 + 69376 26468 46248 47271 80932 80932 -0.018460538974181873 VGPHPHSP 8 Unmodified _VGPHPHSP_ 0 0 0 nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-3|MST1R nc|ENSG00000164078|Q04912-3|MST1R MSMS AL20221201_MKP_PDAC_01 4 414.230712890625 2 414.211569 826.408586 NaN NaN NaN NaN NaN NaN NaN 15.485 1 12.957 12.457 13.457 -2.5273 0 0 0 0.97444 1 7948 7948 0.79363 0 1 69377 16331 46249 47272 80933 80933 -0.011561932767676808 VGPHSRQK 8 Unmodified _VGPHSRQK_ 0 0 0 REV__ENSG00000134917|ENST00000257359|ADAMTS8 REV__ENSG00000134917|ENST00000257359|ADAMTS8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7571105957031 2 454.756675 907.498798 NaN NaN NaN NaN NaN NaN NaN 19.431 1 19.439 18.939 19.939 0.0078487 0 0 0 0.97444 1 9884 9884 0.79363 0 1 + 69378 20026 46250 47273 80934 80934 0.041348560516553334 VGPIAPDL 8 Unmodified _VGPIAPDL_ 0 0 0 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 REV__ENSG00000105929|ENST00000310018|ATP6V0A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2261657714844 2 391.226354 780.438155 1.1462 0.00044843 -0.41077 -0.0001607 0.73544 0.00028772 391.2261925971175 18.95 0.26673 16.329 16.205 16.471 -2.6215 33 16 3 0 0 0 0.80975 2 9978 9978;10080 0.79363 0 1 6619000 + 69379 18473 46251 47274 80935;80936 80935 0.03915325948696591 VGPIKRIRRKL 11 Unmodified _VGPIKRIRRKL_ 0 0 0 REV__ENSG00000119616|ENST00000341162|FCF1 REV__ENSG00000119616|ENST00000341162|FCF1 MSMS AL20221201_MKP_PDAC_01 4 668.45849609375 2 668.456605 1334.89866 NaN NaN NaN NaN NaN NaN NaN 90.011 1 83.835 83.335 84.335 -6.1757 0 0 0 0.94301 1 59428 59428 0.35063 0.35063 1 + 69380 19198 46252 47275 80937 80937 0.24460385667021 VGPIKRIRRKL 11 Unmodified _VGPIKRIRRKL_ 0 0 0 REV__ENSG00000119616|ENST00000341162|FCF1 REV__ENSG00000119616|ENST00000341162|FCF1 MSMS AL20221201_MKP_PDAC_01 4 668.4579467773438 2 668.456605 1334.89866 NaN NaN NaN NaN NaN NaN NaN 90.207 1 84.032 83.532 84.532 -6.1757 0 0 0 0.94301 1 59569 59569 0.35063 0.35063 1 + 69381 19198 46252 47275 80938 80938 0.24460385667021 VGPINPLH 8 Unmodified _VGPINPLH_ 0 0 0 REV__ENSG00000148730|ENST00000373218|EIF4EBP2 REV__ENSG00000148730|ENST00000373218|EIF4EBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7456665039062 2 423.745245 845.475937 0.83433 0.00035354 -0.19674 -8.3368E-05 0.63759 0.00027018 423.74512748182616 42.763 0.26514 42.763 42.644 42.909 0 30 13 3 0 0 0 0.72953 1 23158 23158 14.582 0 1 6893600 + 69382 20964 46253 47276 80939 80939 0.047018369341685684 VGPIRRGG 8 Unmodified _VGPIRRGG_ 0 0 0 ENST00000285605.7_1_10:99474680-99474815:+|nuORF ENST00000285605.7_1_10:99474680-99474815:+|nuORF ENST00000285605.7_1_10:99474680-99474815:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2486267089844 2 406.248486 810.48242 1.1559 0.00046957 0.27479 0.00011163 1.4307 0.0005812 406.2484227742969 87.249 0.66475 81.073 80.699 81.364 -6.1757 108 36 4 0 0 0 0.80975 3 57337 57337;57458;57586 0.79363 0 1 253300000 69383 11440 46254 47277 80940;80941;80942 80940 0.06959774885569914 VGPKAGPL 8 Unmodified _VGPKAGPL_ 0 0 0 REV__ENSG00000188368|ENST00000341747|PRR19 REV__ENSG00000188368|ENST00000341747|PRR19 MSMS AL20221201_MKP_PDAC_01 4 369.8773193359375 2 369.729064 737.443575 NaN NaN NaN NaN NaN NaN NaN 77.33 1 71.155 70.655 71.655 -6.1757 0 0 0 0.97444 1 50578 50578 2.8892 0 1 + 69384 23709 46255 47278 80943 80943 0.06435049531171444 VGPKISGT 8 Unmodified _VGPKISGT_ 0 0 0 REV__nc|ENSG00000196092|Q02548-8|PAX5 REV__nc|ENSG00000196092|Q02548-8|PAX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.7253723144531 2 379.723978 757.433404 0.46909 0.00017812 2.947 0.001119 3.4161 0.0012972 379.72517965908855 49.705 0.25181 49.705 49.582 49.834 0 24 11 3 0 0 0 0.80232 1 27362 27362 5.2307 0 1 5439700 + 69385 23786 46256 47279 80944 80944 0.044984418059470954 VGPKTPLVGW 10 Unmodified _VGPKTPLVGW_ 0 0 0 REV__ENST00000377842.7_1_1:6418929-6419058:-|nuORF REV__ENST00000377842.7_1_1:6418929-6419058:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.8768920898438 3 351.874565 1052.60187 NaN NaN NaN NaN NaN NaN NaN 19.857 1 19.885 19.385 20.385 0.028357 0 0 0 1.0004 1 10033 10033 0.62683 0.35781 1 + 69386 26254 46257 47280 80945 80945 0.07766923719623264 VGPLCLVL 8 Unmodified _VGPLCLVL_ 0 0 0 ENST00000479887.1_1_7:143947766-143948387:-|nuORF;ENSG00000221938|ENST00000641068|OR2A14;ENSG00000221858|ENST00000641592|OR2A12;ENSG00000221836|ENST00000641693|OR2A5 ENST00000479887.1_1_7:143947766-143948387:-|nuORF ENST00000479887.1_1_7:143947766-143948387:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5841369628906 2 407.248775 812.482997 NaN NaN NaN NaN NaN NaN NaN 17.869 1 17.874 17.374 18.374 0.0050564 0 0 0 0.97444 1 9033 9033 0.79363 0 1 69387 10551 46258 47281 80946 80946 0.06925433490380328 VGPLELEIKR 10 Unmodified _VGPLELEIKR_ 0 0 0 nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;ENST00000572253.5_1_17:78055494-78060128:+|nuORF nc|ENSG00000141519|Q4G0X9-3|CCDC40 nc|ENSG00000141519|Q4G0X9-3|CCDC40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2352600097656 3 385.236163 1152.68666 NaN NaN NaN NaN NaN NaN NaN 21.488 1 21.516 21.016 22.016 0.028357 0 0 0 1.0019 1 10905 10905 0.15932 0.01943 1 69388 5342 46259 47282 80947 80947 0.11642249465558052 VGPLGIKP 8 Unmodified _VGPLGIKP_ 0 0 0 REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.7524719238281 2 390.752539 779.490525 0.0077617 3.0329E-06 1.7023 0.00066516 1.71 0.00066819 390.7525617098399 56.692 0.29406 56.692 56.518 56.813 0 26 12 3 0 0 0 0.80143 1 31510 31510 5.7604 0 1 3834800 + 69389 17609 46260 47283 80948 80948 0.09195909082325215 VGPLGIKP 8 Unmodified _VGPLGIKP_ 0 0 0 REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF REV__ENST00000593523.1_1_19:41897706-41903233:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 390.752539 779.490525 0.0077617 3.0329E-06 1.7023 0.00066516 1.71 0.00066819 390.7525617098399 56.692 0.29406 56.692 56.518 56.813 0 -0.021164 0.0012828 NaN 5.7604 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3834800 + 69390 17609 46260 47283 0.09195909082325215 VGPLKWPRSK 10 Unmodified _VGPLKWPRSK_ 0 0 0 REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF REV__ENST00000585057.5_3_3:127783873-127787552:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.9038696289062 3 389.904747 1166.69241 NaN NaN NaN NaN NaN NaN NaN 20.802 1 20.812 20.312 21.312 0.010553 0 0 0 0.99897 1 10620 10620 0.77653 0.61721 1 + 69391 29089 46261 47284 80949 80949 0.11573392767877522 VGPLLHLS 8 Unmodified _VGPLLHLS_ 0 0 0 REV__ENST00000587534.1_1_17:43318564-43318996:-|nuORF REV__ENST00000587534.1_1_17:43318564-43318996:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 835.5042724609375 1 835.503615 834.496338 -0.34046 -0.00028446 1.0067 0.00084108 0.66621 0.00055662 835.5043683905891 69.113 0.27733 68.633 68.485 68.763 -0.48071 15 11 2 0 0 0 0.64035 1 37750 37750 22.453 6.6844 1 703270 + 69392 29120 46262 47285 80950 80950 0.07247007594003207 VGPLLHLS 8 Unmodified _VGPLLHLS_ 0 0 0 REV__ENST00000587534.1_1_17:43318564-43318996:-|nuORF REV__ENST00000587534.1_1_17:43318564-43318996:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2552490234375 2 418.255446 834.496338 NaN NaN NaN NaN NaN NaN NaN 69.112 1 68.632 68.132 69.132 -0.48071 0 0 0 0.94749 1 37779 37779 11.114 0 1 + 69393 29120 46262 47285 80951 80951 0.07247007594003207 VGPLLQQQ 8 Unmodified _VGPLLQQQ_ 0 0 0 REV__nc|ENSG00000196235|O00267-2|SUPT5H REV__nc|ENSG00000196235|O00267-2|SUPT5H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7563171386719 2 441.75581 881.497067 NaN NaN NaN NaN NaN NaN NaN 22.909 1 22.927 22.427 23.427 0.01749 0 0 0 0.95607 1 11782 11782 9.3474 2.6243 1 + 69394 23807 46263 47286 80952 80952 0.05157802243036258 VGPLPTIK 8 Unmodified _VGPLPTIK_ 0 0 0 ENST00000569465.1_1_16:2713356-2721618:-|nuORF ENST00000569465.1_1_16:2713356-2721618:-|nuORF ENST00000569465.1_1_16:2713356-2721618:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 412.7648010253906 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 19.366 1 16.71 16.21 17.21 -2.6564 0 0 0 0.97444 1 10251 10251 2.5775 0 1 69395 15458 46264 47287 80953 80953 0.0979217825380374 VGPLWLLLLG 10 Unmodified _VGPLWLLLLG_ 0 0 0 REV__nc|ENSG00000211633|A0A075B6H8|IGKV1D-42 REV__nc|ENSG00000211633|A0A075B6H8|IGKV1D-42 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5628356933594 3 360.898711 1079.6743 -0.33491 -0.00012087 -2.3359 -0.00084301 -2.6708 -0.00096388 360.8975366045238 36.856 0.25792 36.877 36.684 36.942 0.021542 19 11 2 0 0 0 0.23986 1 19519 19519 0.15932 0 1 1704400 + 69396 29924 46265 47288 80954 80954 0.13765257793193086 VGPPAVKE 8 Unmodified _VGPPAVKE_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.7334594726562 2 398.731803 795.449054 NaN NaN NaN NaN NaN NaN NaN 48.208 1 48.169 47.669 48.669 -0.038643 0 0 0 0.97444 1 25997 25997 0.79363 0 1 69397 6517 46266 47289 80955 80955 0.04314728323004147 VGPPFPAP 8 Unmodified _VGPPFPAP_ 0 0 0 ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF ENST00000425217.5_2_12:118105298-118293285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.2164001464844 2 391.215789 780.417025 1.3119 0.00051323 0.59091 0.00023117 1.9028 0.0007444 391.21595141009186 48.424 0.43295 43.19 42.988 43.421 -5.2339 46 25 2 0 0 0 0.80624 1 30205 30205 2.8892 2.0956 1 34884000 69398 13161 46267 47290 80956 80956 0.018033606398375923 VGPPGSWA 8 Unmodified _VGPPGSWA_ 0 0 0 REV__ENST00000263228.3_1_9:33817566-33817632:+|nuORF REV__ENST00000263228.3_1_9:33817566-33817632:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5302124023438 2 385.695221 769.375889 0.99198 0.0003826 0.12194 4.703E-05 1.1139 0.00042963 385.6949602656362 45.537 0.057804 40.582 40.555 40.613 -4.9549 6 3 2 0 0 0 8.7369 1 27963 27963 9.3474 3.587 1 6435400 + 69399 25044 46268 47291 80957 80957 -0.01802400399628823 VGPPLLIP 8 Unmodified _VGPPLLIP_ 0 0 0 REV__ENST00000540159.3_1_10:133782520-133782814:-|nuORF REV__ENST00000540159.3_1_10:133782520-133782814:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 403.2626037597656 2 403.262739 804.510926 NaN NaN NaN NaN NaN NaN NaN 69.954 1 63.779 63.279 64.279 -6.1757 0 0 0 0.97444 1 45690 45690 0.79363 0 1 + 69400 28576 46269 47292 80958 80958 0.10085079742145808 VGPPMTAEVL 10 Unmodified _VGPPMTAEVL_ 0 0 0 REV__nc|ENSG00000103066|Q8NCC3-2|PLA2G15 REV__nc|ENSG00000103066|Q8NCC3-2|PLA2G15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2710266113281 2 507.270435 1012.52632 NaN NaN NaN NaN NaN NaN NaN 63.622 1 63.622 63.122 64.122 0 0 0 0 0.96627 1 35488 35488 4.3292 1.44 1 + 69401 29543 46270 47293 80959 80959 0.020555784770067476 VGPPSHLLG 9 Unmodified _VGPPSHLLG_ 0 0 0 REV__ENST00000381297.9_1_X:1583597-1583888:-|nuORF REV__ENST00000381297.9_1_X:1583597-1583888:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.75048828125 2 438.750527 875.486502 NaN NaN NaN NaN NaN NaN NaN 28.216 1 28.216 27.716 28.716 0 0 0 0 0.84564 1 14565 14565 2.0598 1.2661 1 + 69402 26330 46271 47294 80960 80960 0.04377819588626153 VGPQAQARCEL 11 Unmodified _VGPQAQARCEL_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2007751464844 3 391.201124 1170.58154 0.15585 6.0969E-05 -1.8438 -0.0007213 -1.6879 -0.00066033 391.2003128329468 39.238 0.21426 39.25 39.152 39.366 0.011452 18 9 3 0 0 0 0.69155 1 20900 20900 5.0475 1.1712 1 929650 + 69403 19129 46272 47295 80961 80961 0.0030738499747258174 VGPQAQLA 8 Unmodified _VGPQAQLA_ 0 0 0 REV__ENSG00000101493|ENST00000443185|ZNF516 REV__ENSG00000101493|ENST00000443185|ZNF516 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8851013183594 2 392.221603 782.428653 NaN NaN NaN NaN NaN NaN NaN 14.498 1 14.498 13.998 14.998 0 0 0 0 0.97444 1 6897 6897 0.79363 0 1 + 69404 18180 46273 47296 80962 80962 0.02873557663167503 VGPQECEN 8 Unmodified _VGPQECEN_ 0 0 0 REV__ENSG00000119681|ENST00000261978|LTBP2 REV__ENSG00000119681|ENST00000261978|LTBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.1803894042969 2 438.181817 874.349082 NaN NaN NaN NaN NaN NaN NaN 38.474 1 38.491 37.991 38.991 0.01704 0 0 0 0.97444 1 20459 20459 0.79363 0 1 + 69405 19200 46274 47297 80963 80963 -0.09311877073128016 VGPQNYGTFTC 11 Unmodified _VGPQNYGTFTC_ 0 0 0 nc|ENSG00000268758|Q86SQ3|ADGRE4P nc|ENSG00000268758|Q86SQ3|ADGRE4P nc|ENSG00000268758|Q86SQ3|ADGRE4P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1782836914062 3 396.178096 1185.51246 NaN NaN NaN NaN NaN NaN NaN 23.763 1 23.775 23.275 24.275 0.012396 0 0 0 0.94165 1 12127 12127 0.45452 0 1 69406 16600 46275 47298 80964 80964 -0.0728769902204931 VGPRCRRVQ 9 Unmodified _VGPRCRRVQ_ 0 0 0 REV__ENST00000360315.7_1_19:19617190-19617373:+|nuORF REV__ENST00000360315.7_1_19:19617190-19617373:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5385437011719 3 357.538182 1069.59272 0.40688 0.00014548 1.336 0.00047767 1.7429 0.00062315 357.5386005222818 46.009 0.3829 45.981 45.826 46.208 -0.028015 47 17 4 0 0 0 0.58865 1 24819 24819 1.0715 0 1 3925700 + 69407 25909 46276 47299 80965 80965 0.06070251882283628 VGPRHRGRPL 10 Unmodified _VGPRHRGRPL_ 0 0 0 REV__ENST00000535572.5_1_12:862139-862463:+|nuORF REV__ENST00000535572.5_1_12:862139-862463:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.5676574707031 3 382.231857 1143.67374 NaN NaN NaN NaN NaN NaN NaN 17.978 1 17.984 17.484 18.484 0.0060463 0 0 0 0.98914 1 9092 9092 0.77653 0 1 + 69408 28529 46277 47300 80966 80966 0.10765275916696737 VGPRKTLI 8 Unmodified _VGPRKTLI_ 0 0 0 nc|ENSG00000198300|Q9GZU2-3|PEG3;ENSG00000198300|ENST00000326441|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 MSMS AL20221201_MKP_PDAC_01 4 442.2899780273438 2 442.28982 882.565087 NaN NaN NaN NaN NaN NaN NaN 40.174 1 35.645 35.145 36.145 -4.5294 0 0 0 0.4392 1 23962 23962 48.346 0 1 69409 10074 46278 47301 80967 80967 0.11910671893701874 VGPRKTLI 8 Unmodified _VGPRKTLI_ 0 0 0 nc|ENSG00000198300|Q9GZU2-3|PEG3;ENSG00000198300|ENST00000326441|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 nc|ENSG00000198300|Q9GZU2-3|PEG3 MSMS AL20221201_MKP_PDAC_01 4 442.290283203125 2 442.28982 882.565087 NaN NaN NaN NaN NaN NaN NaN 40.356 1 35.827 35.327 36.327 -4.5294 0 0 0 0.4392 1 24088 24088 48.346 0 1 69410 10074 46278 47301 80968 80968 0.11910671893701874 VGPRLGMKRL 10 Unmodified _VGPRLGMKRL_ 0 0 0 REV__ENST00000470594.5_1_X:51805328-51809606:-|nuORF REV__ENST00000470594.5_1_X:51805328-51809606:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2348327636719 3 376.234099 1125.68047 1.7566 0.00066088 -0.84326 -0.00031726 0.9133 0.00034362 376.23365144075126 94.229 0.32431 88.054 87.88 88.204 -6.1757 44 18 3 0 0 0 0.60623 1 62498 62498 6.1918 0 1 21085000 + 69411 21233 46279 47302 80969 80969 0.12265452753058526 VGPRLHQPL 9 Unmodified _VGPRLHQPL_ 0 0 0 REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.8043212890625 2 508.803626 1015.5927 -0.47622 -0.0002423 0.25153 0.00012798 -0.22469 -0.00011432 508.8038514528628 28.199 0.16212 28.199 28.109 28.271 0 12 7 2 0 0 0 0.49272 1 14577 14577 7.9102 0.62092 1 645470 + 69412 25695 46280 47303 80970 80970 0.08552575153930775 VGPRLHQPL 9 Unmodified _VGPRLHQPL_ 0 0 0 REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF REV__ENST00000340634.4_1_3:142681054-142682041:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 508.803626 1015.5927 -0.47622 -0.0002423 0.25153 0.00012798 -0.22469 -0.00011432 508.8038514528628 28.199 0.16212 28.199 28.109 28.271 0 0 0 NaN 7.9102 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 645470 + 69413 25695 46280 47303 0.08552575153930775 VGPRNLRVI 9 Unmodified _VGPRNLRVI_ 0 0 0 ENST00000374017.3_1_6:34725332-34725551:+|nuORF ENST00000374017.3_1_6:34725332-34725551:+|nuORF ENST00000374017.3_1_6:34725332-34725551:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.32470703125 2 512.324725 1022.6349 NaN NaN NaN NaN NaN NaN NaN 32.083 1 32.112 31.612 32.612 0.029743 0 0 0 0.84369 1 16833 16833 2.3027 0 1 69414 12431 46281 47304 80971 80971 0.12448550562328364 VGPRNRQWY 9 Unmodified _VGPRNRQWY_ 0 0 0 REV__ENSG00000215252|ENST00000683415|GOLGA8B REV__ENSG00000215252|ENST00000683415|GOLGA8B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.5398254394531 3 392.540468 1174.59957 -0.38536 -0.00015127 -0.79076 -0.0003104 -1.1761 -0.00046167 392.53993064936816 22.406 0.18282 22.406 22.324 22.507 0 14 8 2 0 0 0 0.58466 1 11394 11394 1.1933 0.12188 1 559130 + 69415 22857 46282 47305 80972 80972 0.019258880344978024 VGPRPRKP 8 Unmodified _VGPRPRKP_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS AL20221201_MKP_PDAC_01 4 453.7857666015625 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 14.253 1 11.75 11.25 12.25 -2.5029 0 0 0 0.97444 1 7227 7227 0.79363 0 1 + 69416 21009 46283 47306 80973 80973 0.09936323328031449 VGPRPRKP 8 Unmodified _VGPRPRKP_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS AL20221201_MKP_PDAC_01 4 453.7849731445312 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 14.489 1 11.986 11.486 12.486 -2.5029 0 0 0 0.97444 1 7362 7362 0.79363 0 1 + 69417 21009 46283 47306 80974 80974 0.09936323328031449 VGPRPRKP 8 Unmodified _VGPRPRKP_ 0 0 0 REV__ENSG00000149596|ENST00000372980|JPH2 REV__ENSG00000149596|ENST00000372980|JPH2 MSMS AL20221201_MKP_PDAC_01 4 453.7846374511719 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 14.928 1 12.401 11.901 12.901 -2.5273 0 0 0 0.97444 1 7617 7617 0.79363 0 1 + 69418 21009 46283 47306 80975 80975 0.09936323328031449 VGPRVLQIF 9 Unmodified _VGPRVLQIF_ 0 0 0 REV__ENSG00000214026|ENST00000397298|MRPL23 REV__ENSG00000214026|ENST00000397298|MRPL23 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.7686157226562 2 514.816202 1027.61785 0.2416 0.00012438 1.5373 0.00079143 1.7789 0.00091581 514.8171747091802 98.734 0.15501 92.559 92.493 92.648 -6.1757 14 11 2 0 0 0 0.19298 1 65506 65506 13.508 1.8676 1 25675000 + 69419 24304 46284 47307 80976 80976 0.10514629956514909 VGPSAAWMF 9 Unmodified _VGPSAAWMF_ 0 0 0 REV__ENST00000535222.5_1_11:61188589-61189007:-|nuORF REV__ENST00000535222.5_1_11:61188589-61189007:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2313842773438 2 483.231113 964.447674 NaN NaN NaN NaN NaN NaN NaN 20.959 1 20.959 20.459 21.459 0 0 0 0 0.82396 1 10573 10573 4.756 0.42677 1 + 69420 28521 46285 47308 80977 80977 -0.035972290374161275 VGPSPLLH 8 Unmodified _VGPSPLLH_ 0 0 0 REV__ENST00000261813.8_1_5:139625066-139625549:-|nuORF REV__ENST00000261813.8_1_5:139625066-139625549:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2404174804688 2 410.239796 818.465038 0.6034 0.00024754 0.040898 1.6778E-05 0.6443 0.00026432 410.2398770680535 52.22 0.24182 51.787 51.649 51.891 -0.43367 18 11 2 0 0 0 0.80143 1 28210 28210 5.7604 0 1 1392500 + 69421 25007 46286 47309 80978 80978 0.04854434559899801 VGPSRYLLF 9 Unmodified _VGPSRYLLF_ 0 0 0 ENSG00000139180|ENST00000266544|NDUFA9;ENST00000544675.1_1_12:4777624-4791467:+|nuORF;ENST00000543979.1_1_12:4777624-4835764:+|nuORF ENSG00000139180|ENST00000266544|NDUFA9 ENSG00000139180|ENST00000266544|NDUFA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.3013305664062 2 526.300384 1050.58622 0.24901 0.00013105 2.2133 0.0011649 2.4623 0.0012959 526.3017837165733 69.714 0.42399 69.745 69.573 69.997 0.030922 36 21 2 0 0 0 0.080011 1 38326 38326 33.445 5.2717 1 3637200 69422 5132 46287 47310 80979 80979 0.06294637202563536 VGPSSERRPE 10 Unmodified _VGPSSERRPE_ 0 0 0 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 ENSG00000186340|ENST00000617924|THBS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.287109375 2 557.285994 1112.55744 NaN NaN NaN NaN NaN NaN NaN 44.46 1 44.46 43.96 44.96 0 0 0 0 0.85122 1 24190 24190 10.074 0.72649 1 69423 9471 46288 47311 80980 80980 0.0056586783548482344 VGPSSNCK 8 Unmodified _VGPSSNCK_ 0 0 0 REV__ENST00000484656.5_1_1:33549518-33583718:+|nuORF REV__ENST00000484656.5_1_1:33549518-33583718:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1886901855469 2 396.189445 790.364338 NaN NaN NaN NaN NaN NaN NaN 18.591 1 18.591 18.091 19.091 0 0 0 0 0.97444 1 9253 9253 2.5775 0 1 + 69424 20595 46289 47312 80981 80981 -0.0392296548526474 VGPSSRLLSWL 11 Unmodified _VGPSSRLLSWL_ 0 0 0 REV__nc|ENSG00000175110|P82650-2|MRPS22 REV__nc|ENSG00000175110|P82650-2|MRPS22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.5674133300781 3 405.567912 1213.68191 NaN NaN NaN NaN NaN NaN NaN 31.855 1 31.726 31.226 32.226 -0.12915 0 0 0 0.94165 1 16573 16573 0.45452 0.1855 1 + 69425 22843 46290 47313 80982 80982 0.0836136532279852 VGPTCPLP 8 Unmodified _VGPTCPLP_ 0 0 0 REV__ENST00000261192.11_1_12:25102180-25102231:-|nuORF REV__ENST00000261192.11_1_12:25102180-25102231:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2072143554688 2 392.207107 782.399661 NaN NaN NaN NaN NaN NaN NaN 17.362 1 17.376 16.876 17.876 0.013865 0 0 0 0.97444 1 8627 8627 0.79363 0 1 + 69426 24975 46291 47314 80983 80983 -0.0002430295745625699 VGPTGERW 8 Unmodified _VGPTGERW_ 0 0 0 REV__ENST00000476994.1_1_17:17723326-17726886:-|nuORF REV__ENST00000476994.1_1_17:17723326-17726886:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2307434082031 2 451.229959 900.445365 1.1115 0.00050155 0.74513 0.00033623 1.8567 0.00083778 451.2301600550986 58.344 0.51701 58.284 57.935 58.452 -0.060722 64 25 4 0 0 0 0.80143 1 31742 31742 5.7604 0 1 21496000 + 69427 27604 46292 47315 80984 80984 -0.008839414508656773 VGPVCGTKI 9 Unmodified _VGPVCGTKI_ 0 0 0 ENST00000442998.6_1_6:33541307-33541814:-|nuORF ENST00000442998.6_1_6:33541307-33541814:-|nuORF ENST00000442998.6_1_6:33541307-33541814:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 437.2472534179688 2 437.246763 872.478974 NaN NaN NaN NaN NaN NaN NaN 22.436 1 19.658 19.158 20.158 -2.7784 0 0 0 0.6557 1 12067 12067 10.824 0 1 69428 13415 46293 47316 80985 80985 0.03763343996683943 VGPVDAQVY 9 Unmodified _VGPVDAQVY_ 0 0 0 ENSG00000170946|ENST00000465995|DNAJC24;ENST00000526042.5_1_11:31443660-31447922:+|nuORF;ENST00000527731.1_1_11:31436399-31447922:+|nuORF;ENST00000530125.1_1_11:31438740-31451945:+|nuORF ENSG00000170946|ENST00000465995|DNAJC24 ENSG00000170946|ENST00000465995|DNAJC24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2456970214844 2 474.245275 946.475997 -0.38678 -0.00018343 0.84542 0.00040094 0.45864 0.00021751 474.2458386130513 26.674 0.27398 26.674 26.508 26.782 0 20 12 2 0 0 0 0.2143 1 13722 13722 21.747 0.87544 1 2651100 69429 8047 46294 47317 80986 80986 0.0006179214351504925 VGPVFLGHRD 10 Unmodified _VGPVFLGHRD_ 0 0 0 ENSG00000107554|ENST00000324109|DNMBP;nc|ENSG00000107554|Q6XZF7-2|DNMBP ENSG00000107554|ENST00000324109|DNMBP ENSG00000107554|ENST00000324109|DNMBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1998596191406 3 366.201452 1095.58253 NaN NaN NaN NaN NaN NaN NaN 14.857 1 14.857 14.357 15.357 0 0 0 0 0.98914 1 7102 7102 0.77653 0.50751 1 69430 2500 46295 47318 80987 80987 0.03855967428717122 VGPVGPRGPQ 10 Unmodified _VGPVGPRGPQ_ 0 0 0 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 ENSG00000204262|ENST00000374866|COL5A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.27490234375 2 482.272158 962.529764 NaN NaN NaN NaN NaN NaN NaN 46.284 1 46.25 45.75 46.75 -0.033417 0 0 0 0.19054 1 24895 24895 43.858 3.901 1 69431 10256 46296 47319 80988 80988 0.04700009365899405 VGPVHPHL 8 Unmodified _VGPVHPHL_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2471923828125 2 428.245412 854.476272 NaN NaN NaN NaN NaN NaN NaN 45.985 1 45.957 45.457 46.457 -0.028011 0 0 0 0.9706 1 24727 24727 6.3541 0 1 + 69432 29813 46297 47320 80989 80989 0.043212566540205444 VGPVVGRRAL 10 Unmodified _VGPVVGRRAL_ 0 0 0 REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3250122070312 2 512.324725 1022.6349 NaN NaN NaN NaN NaN NaN NaN 43.779 1 43.764 43.264 44.264 -0.015667 0 0 0 0.92825 1 23469 23469 6.7232 0.51738 1 + 69433 28563 46298 47321 80990 80990 0.12448550562328364 VGPWDGPQ 8 Unmodified _VGPWDGPQ_ 0 0 0 ENSG00000128617|ENST00000249389|OPN1SW ENSG00000128617|ENST00000249389|OPN1SW ENSG00000128617|ENST00000249389|OPN1SW MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2041320800781 2 428.20341 854.392267 NaN NaN NaN NaN NaN NaN NaN 17.312 1 17.317 16.817 17.817 0.0050564 0 0 0 0.97444 1 8727 8727 0.79363 0 1 69434 4079 46299 47322 80991 80991 -0.04075319233515984 VGPWGTWRFQ 10 Unmodified _VGPWGTWRFQ_ 0 0 0 ENST00000397561.3_1_9:14921673-14921847:-|nuORF ENST00000397561.3_1_9:14921673-14921847:-|nuORF ENST00000397561.3_1_9:14921673-14921847:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5295104980469 3 411.876969 1232.60908 NaN NaN NaN NaN NaN NaN NaN 18.753 1 18.753 18.253 19.253 0 0 0 0 0.99897 1 9345 9345 0.77653 0 1 69435 12825 46300 47323 80992 80992 0.002076563200489545 VGPWRGTKL 9 Unmodified _VGPWRGTKL_ 0 0 0 REV__ENST00000381222.8_2_X:2405587-2405806:-|nuORF REV__ENST00000381222.8_2_X:2405587-2405806:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2686462402344 2 507.298176 1012.5818 0.80605 0.00040891 -1.4422 -0.00073164 -0.63617 -0.00032273 507.29729267795653 60.461 0.25663 60.461 60.368 60.625 0 15 11 2 0 0 0 0.21367 1 33789 33789 4.756 0 1 714500 + 69436 26329 46301 47324 80993 80993 0.07601172779641274 VGPYLFPY 8 Unmodified _VGPYLFPY_ 0 0 0 nc|ENSG00000102312|Q9H237-5|PORCN;nc|ENSG00000102312|Q9H237-4|PORCN;nc|ENSG00000102312|Q9H237-3|PORCN;nc|ENSG00000102312|Q9H237-2|PORCN;ENST00000485288.6_1_X:48368107-48378861:+|nuORF;ENSG00000102312|ENST00000326194|PORCN nc|ENSG00000102312|Q9H237-5|PORCN nc|ENSG00000102312|Q9H237-5|PORCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2505187988281 2 478.249829 954.485105 0.26 0.00012435 2.7623 0.0013211 3.0223 0.0014454 478.25102369214784 31.5 0.20229 31.5 31.398 31.6 0 12 9 2 0 0 0 0.80044 1 16424 16424 6.3541 2.0249 1 1088800 69437 2034 46302 47325 80994 80994 0.006041854998557028 VGPYPSWW 8 Unmodified _VGPYPSWW_ 0 0 0 ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6 ENSG00000172292|ENST00000305747|CERS6 ENSG00000172292|ENST00000305747|CERS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2371215820312 2 496.237253 990.459953 NaN NaN NaN NaN NaN NaN NaN 19.632 1 19.632 19.132 20.132 0 0 0 0 0.97444 1 9831 9831 0.79363 0 1 69438 8198 46303 47326 80995 80995 -0.035658693027244226 VGQAAPDR 8 Unmodified _VGQAAPDR_ 0 0 0 ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENST00000451750.5_1_19:15783919-15791491:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8796081542969 2 407.214309 812.414065 NaN NaN NaN NaN NaN NaN NaN 8.6227 1 8.6403 8.1403 9.1403 0.017581 0 0 0 0.97444 1 4290 4290 0.79363 0 1 69439 13528 46304 47327 80996 80996 0.00035485515036270954 VGQAAPDR 8 Unmodified _VGQAAPDR_ 0 0 0 ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENST00000451750.5_1_19:15783919-15791491:+|nuORF ENST00000451750.5_1_19:15783919-15791491:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 406.8797912597656 2 407.214309 812.414065 NaN NaN NaN NaN NaN NaN NaN 12.478 1 9.9958 9.4958 10.496 -2.482 0 0 0 0.97444 1 6313 6313 2.3027 0 1 69440 13528 46304 47327 80997 80997 0.00035485515036270954 VGQASLTQ 8 Unmodified _VGQASLTQ_ 0 0 0 REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549 REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.21630859375 2 402.216517 802.418482 0.73999 0.00029763 -1.3652 -0.00054909 -0.62516 -0.00025145 402.21582254144727 74.44 0.41414 73.964 73.741 74.155 -0.47588 31 17 2 0 0 0 0.81007 1 40809 40809 0.6015 0 1 1883800 + 69441 19292 46305 47328 80998 80998 0.009369499379317858 VGQDQEEE 8 Unmodified _VGQDQEEE_ 0 0 0 REV__nc|ENSG00000117713|O14497-3|ARID1A REV__nc|ENSG00000117713|O14497-3|ARID1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.1931762695312 2 467.193436 932.37232 0.31195 0.00014574 -0.57834 -0.0002702 -0.26639 -0.00012446 467.1930084740991 65.69 0.85511 59.515 59.11 59.965 -6.1757 122 49 3 0 0 0 0.80975 1 42730 42730 0.79363 0 1 116380000 + 69442 16730 46306 47329 80999 80999 -0.09657159754806344 VGQEDWWKH 9 Unmodified _VGQEDWWKH_ 0 0 0 REV__ENSG00000132423|ENST00000254759|COQ3 REV__ENSG00000132423|ENST00000254759|COQ3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5211486816406 3 395.520962 1183.54106 NaN NaN NaN NaN NaN NaN NaN 19.074 1 19.097 18.597 19.597 0.023106 0 0 0 0.84369 1 9601 9601 1.1933 0 1 + 69443 19851 46307 47330 81000 81000 -0.04337213330632039 VGQEDWWKH 9 Unmodified _VGQEDWWKH_ 0 0 0 REV__ENSG00000132423|ENST00000254759|COQ3 REV__ENSG00000132423|ENST00000254759|COQ3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1869812011719 3 395.520962 1183.54106 NaN NaN NaN NaN NaN NaN NaN 19.116 1 19.139 18.639 19.639 0.023106 0 0 0 0.85737 1 9624 9624 0.26902 0 1 + 69444 19851 46307 47330 81001 81001 -0.04337213330632039 VGQEGFNA 8 Unmodified _VGQEGFNA_ 0 0 0 REV__ENSG00000138131|ENST00000260702|LOXL4 REV__ENSG00000138131|ENST00000260702|LOXL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5265808105469 2 411.193042 820.371532 NaN NaN NaN NaN NaN NaN NaN 20.263 1 20.292 19.792 20.792 0.028357 0 0 0 0.97444 1 10251 10251 0.79363 0 1 + 69445 20307 46308 47331 81002 81002 -0.04583909613199921 VGQGCWPG 8 Unmodified _VGQGCWPG_ 0 0 0 ENST00000402119.8_1_19:16045502-16045571:-|nuORF ENST00000402119.8_1_19:16045502-16045571:-|nuORF ENST00000402119.8_1_19:16045502-16045571:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1793212890625 2 402.178881 802.343209 NaN NaN NaN NaN NaN NaN NaN 14.411 1 14.411 13.911 14.911 0 0 0 0 0.97444 1 6848 6848 0.79363 0 1 69446 12889 46309 47332 81003 81003 -0.0658693079412842 VGQGDFHLL 9 Unmodified _VGQGDFHLL_ 0 0 0 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7276000976562 2 493.258717 984.50288 0.19428 9.583E-05 0.2277 0.00011231 0.42197 0.00020814 493.2589529684205 58.554 0.19254 58.554 58.414 58.606 0 10 7 2 0 0 0 0.19891 1 32610 32610 11.64 2.2929 1 497890 69447 16613 46310 47333 81004 81004 0.010009007547182591 VGQGDFHLL 9 Unmodified _VGQGDFHLL_ 0 0 0 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 nc|ENSG00000284194|O43819|SCO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.258717 984.50288 0.47732 0.00023544 0.27348 0.00013489 0.7508 0.00037034 493.2588409727162 58.947 0.14443 58.456 58.412 58.556 -0.49079 -0.049 3.2289E-06 NaN 16.942 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 593680 69448 16613 46310 47333 0.010009007547182591 VGQHWFHY 8 Unmodified _VGQHWFHY_ 0 0 0 REV__FURIN|p.R70Q|1|0.16|ENSG00000140564|chr15:90876286-90876286|G/A|missense_variant REV__FURIN|p.R70Q|1|0.16|ENSG00000140564|chr15:90876286-90876286|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.24951171875 2 537.251226 1072.4879 -0.34715 -0.00018651 -2.4196 -0.0012999 -2.7667 -0.0014864 537.2492491882844 28.799 0.40151 28.799 28.641 29.043 0 42 19 3 0 0 0 0.80624 1 15000 15000 2.8892 0.58649 1 3740000 + 69449 29347 46311 47334 81005 81005 -0.04544546322631504 VGQKTVINTE 10 Unmodified _VGQKTVINTE_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.5371398925781 3 363.536389 1087.58734 0.17666 6.4223E-05 3.4476 0.0012533 3.6242 0.0013175 363.53768719797495 31.442 0.20621 31.442 31.296 31.503 0 15 9 2 0 0 0 0.71276 1 16364 16364 0.62683 0 1 1174500 + 69450 20769 46312 47335 81006 81006 0.04704806780819126 VGQKTVINTE 10 Unmodified _VGQKTVINTE_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.536389 1087.58734 0.17666 6.4223E-05 3.4476 0.0012533 3.6242 0.0013175 363.53768719797495 31.442 0.20621 31.442 31.296 31.503 0 0.095482 -0.00037977 NaN 0.62683 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1174500 + 69451 20769 46312 47335 0.04704806780819126 VGQKTVINTE 10 Unmodified _VGQKTVINTE_ 0 0 0 REV__ENSG00000145362|ENST00000357077|ANK2 REV__ENSG00000145362|ENST00000357077|ANK2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 363.536389 1087.58734 1.2864 0.00046767 4.3117 0.0015675 5.5981 0.0020351 363.5379322169724 35.346 0.19574 31.251 31.137 31.333 -4.0951 -0.095482 0.00056268 NaN 0.62683 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 5247000 + 69452 20769 46312 47335 0.04704806780819126 VGQLKKPFIP 10 Unmodified _VGQLKKPFIP_ 0 0 0 ENST00000518114.1_1_2:190619886-190627438:-|nuORF;nc|ENSG00000128694|Q9H4B0-3|OSGEPL1;ENST00000524043.1_1_2:190618786-190626366:-|nuORF;nc|ENSG00000128694|Q9H4B0-2|OSGEPL1;ENSG00000128694|ENST00000264151|OSGEPL1 ENST00000518114.1_1_2:190619886-190627438:-|nuORF;nc|ENSG00000128694|Q9H4B0-3|OSGEPL1 ENST00000518114.1_1_2:190619886-190627438:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2378540039062 3 376.237615 1125.69102 NaN NaN NaN NaN NaN NaN NaN 85.086 1 84.584 84.084 85.084 -0.5015 0 0 0 0.99897 1 46556 46556 0.77653 0.50751 1 69453 14686;4085 46313 47336 81007 81007 0.13319758679131155 VGQNERFL 8 Unmodified _VGQNERFL_ 0 0 0 REV__ENSG00000147234|ENST00000683843|FRMPD3 REV__ENSG00000147234|ENST00000683843|FRMPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7568054199219 2 481.756341 961.498129 -0.15768 -7.5965E-05 1.0072 0.00048524 0.84955 0.00040928 481.75673223968005 36.919 0.27846 36.941 36.791 37.07 0.021545 21 12 2 0 0 0 0.63229 1 19581 19581 23.148 2.7339 1 1429100 + 69454 20875 46314 47337 81008 81008 0.015840166119460264 VGQPGRSQF 9 Unmodified _VGQPGRSQF_ 0 0 0 REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF REV__ENST00000536760.1_1_12:110002806-110011285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2544250488281 2 488.253966 974.493378 0.34414 0.00016803 1.591 0.0007768 1.9351 0.00094483 488.25503329942273 19.712 0.22642 19.72 19.629 19.855 0.0078506 16 10 2 0 0 0 0.19127 1 10031 10031 24.021 5.8742 1 464160 + 69455 20408 46315 47338 81009 81009 0.005111324691824848 VGQQDADA 8 Unmodified _VGQQDADA_ 0 0 0 REV__ENSG00000156875|ENST00000370152|MFSD14A REV__ENSG00000156875|ENST00000370152|MFSD14A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1796264648438 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 15.335 1 15.335 14.835 15.835 0 0 0 0 0.97444 1 7378 7378 0.79363 0 1 + 69456 21349 46316 47339 81010 81010 -0.06336803855481321 VGQQQWGV 8 Unmodified _VGQQQWGV_ 0 0 0 REV__ENST00000292431.4_1_19:13246727-13246781:+|nuORF REV__ENST00000292431.4_1_19:13246727-13246781:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2302551269531 2 451.229959 900.445365 0.17901 8.0773E-05 0.734 0.0003312 0.913 0.00041197 451.2301234941067 58.483 0.16855 57.992 57.901 58.07 -0.49079 12 7 2 0 0 0 0.80624 1 31817 31817 2.8892 0.31174 1 1467900 + 69457 25244 46317 47340 81011 81011 -0.008839414508543086 VGQRAGAP 8 Unmodified _VGQRAGAP_ 0 0 0 REV__ENST00000476527.6_1_3:15138164-15140563:-|nuORF REV__ENST00000476527.6_1_3:15138164-15140563:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2122802734375 2 378.211569 754.408586 NaN NaN NaN NaN NaN NaN NaN 28 1 28 27.5 28.5 0 0 0 0 0.97348 1 14444 14444 5.7604 0 1 + 69458 27595 46318 47341 81012 81012 0.021558067232263056 VGQRVRNKP 9 Unmodified _VGQRVRNKP_ 0 0 0 REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF REV__ENST00000393784.7_1_5:172377848-172378373:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.881103515625 3 351.880713 1052.62031 -0.59059 -0.00020782 0.63058 0.00022189 0.03999 1.4072E-05 351.8810204323611 14.819 0.086584 14.788 14.745 14.832 -0.030868 32 20 2 0 0 0 0.60664 1 7230 7230 0.96228 0 1 415680 + 69459 26427 46319 47342 81013 81013 0.09610478414197132 VGQSCLDLAY 10 Unmodified _VGQSCLDLAY_ 0 0 0 REV__nc|ENSG00000107815|Q96RR1-3|TWNK REV__nc|ENSG00000107815|Q96RR1-3|TWNK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7529907226562 2 534.755149 1067.49575 0.42405 0.00022676 -2.6019 -0.0013914 -2.1778 -0.0011646 534.7542323859956 68.277 0.22639 68.277 68.165 68.391 0 14 10 2 0 0 0 0.66569 1 38087 38087 6.7232 0 1 517860 + 69460 18576 46320 47343 81014 81014 -0.035301999080502355 VGQTLPIP 8 Unmodified _VGQTLPIP_ 0 0 0 nc|ENSG00000084734|Q14397|GCKR nc|ENSG00000084734|Q14397|GCKR nc|ENSG00000084734|Q14397|GCKR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7487487792969 2 412.747453 823.480354 NaN NaN NaN NaN NaN NaN NaN 56.319 1 56.25 55.75 56.75 -0.068737 0 0 0 0.97444 1 30631 30631 0.79363 0 1 69461 16059 46321 47344 81015 81015 0.06155301357091503 VGQVELGG 8 Unmodified _VGQVELGG_ 0 0 0 chr11:2159997-2160548|59|7183.93|0.0|29.42|-|2|INS,None|1;chr11:2159997-2161168|82|279.27|0.2|10.48|-|2|INS,INS-IGF2|1;ENSG00000254647|ENST00000381330|INS chr11:2159997-2160548|59|7183.93|0.0|29.42|-|2|INS,None|1 chr11:2159997-2160548|59|7183.93|0.0|29.42|-|2|INS,None|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.7074279785156 2 379.705786 757.397018 NaN NaN NaN NaN NaN NaN NaN 28.798 1 28.828 28.328 29.328 0.029974 0 0 0 0.97444 1 15004 15004 0.79363 0 1 69462 69 46322 47345 81016 81016 0.008615649092462263 VGQVEPLL 8 Unmodified _VGQVEPLL_ 0 0 0 REV__ENST00000486464.1_2_13:45113009-45147314:-|nuORF REV__ENST00000486464.1_2_13:45113009-45147314:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.7543029785156 2 427.752736 853.490919 NaN NaN NaN NaN NaN NaN NaN 49.819 1 49.771 49.271 50.271 -0.048824 0 0 0 0.97444 1 26932 26932 0.79363 0 1 + 69463 27306 46323 47346 81017 81017 0.0583128401152635 VGQVFQSH 8 Unmodified _VGQVFQSH_ 0 0 0 ENSG00000138823|ENST00000265517|MTTP ENSG00000138823|ENST00000265517|MTTP ENSG00000138823|ENST00000265517|MTTP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2310180664062 2 451.229959 900.445365 NaN NaN NaN NaN NaN NaN NaN 61.187 1 60.698 60.198 61.198 -0.48932 0 0 0 0.97444 1 33325 33325 2.5775 0 1 69464 5114 46324 47347 81018 81018 -0.008839414508543086 VGQYRFVV 8 Unmodified _VGQYRFVV_ 0 0 0 REV__nc|ENSG00000197948|Q86WN1-3|FCHSD1 REV__nc|ENSG00000197948|Q86WN1-3|FCHSD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.270263671875 2 484.271627 966.528701 NaN NaN NaN NaN NaN NaN NaN 19.346 1 19.346 18.846 19.846 0 0 0 0 0.97348 1 9669 9669 5.7604 0 1 + 69465 29894 46325 47348 81019 81019 0.04409794996990968 VGRAARLPRSI 11 Unmodified _VGRAARLPRSI_ 0 0 0 ENST00000452802.5_1_3:8540357-8543323:-|nuORF ENST00000452802.5_1_3:8540357-8543323:-|nuORF ENST00000452802.5_1_3:8540357-8543323:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2507934570312 3 399.250918 1194.73092 NaN NaN NaN NaN NaN NaN NaN 46.696 1 46.663 46.163 47.163 -0.033417 0 0 0 0.94293 1 25132 25132 0.40827 0.041592 1 69466 13548 46326 47349 81020 81020 0.14134698402403956 VGRAEERPWP 10 Unmodified _VGRAEERPWP_ 0 0 0 REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8140258789062 2 598.812179 1195.60981 0.67206 0.00040244 1.2711 0.00076117 1.9432 0.0011636 598.812989322161 30.267 0.38825 30.186 29.999 30.387 -0.080431 18 14 2 0 0 0 0.69064 1 15701 15701 3.9444 1.2092 1 886250 + 69467 25182 46327 47350 81021 81021 0.019824509690806735 VGRAEERPWP 10 Unmodified _VGRAEERPWP_ 0 0 0 REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5438842773438 3 399.543878 1195.60981 0.65343 0.00026107 -0.016391 -6.5489E-06 0.63704 0.00025453 399.543780229631 33.031 0.57433 29.175 28.887 29.461 -3.8562 99 35 3 0 0 0 0.60623 1 18882 18882 6.1918 0 1 124040000 + 69468 25182 46327 47350 81022 81022 0.019824509690806735 VGRAEERPWP 10 Unmodified _VGRAEERPWP_ 0 0 0 REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8108520507812 2 598.812179 1195.60981 -0.046937 -2.8106E-05 -0.40658 -0.00024347 -0.45352 -0.00027157 598.8118023894232 32.978 0.4883 29.122 28.904 29.393 -3.8562 38 30 2 0 0 0 0.54684 1 18959 18959 13.906 1.6654 1 20571000 + 69469 25182 46327 47350 81023 81023 0.019824509690806735 VGRAEERPWP 10 Unmodified _VGRAEERPWP_ 0 0 0 REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF REV__ENST00000278616.8_1_11:108093803-108098322:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.812179 1195.60981 0.67206 0.00040244 1.2711 0.00076117 1.9432 0.0011636 598.812989322161 30.267 0.38825 30.186 29.999 30.387 -0.080431 0 0 NaN 3.9444 18 14 2 NaN NaN NaN NaN 0 NaN NaN 0 886250 + 69470 25182 46327 47350 0.019824509690806735 VGRAGPRP 8 Unmodified _VGRAGPRP_ 0 0 0 ENSG00000112164|ENST00000373256|GLP1R ENSG00000112164|ENST00000373256|GLP1R ENSG00000112164|ENST00000373256|GLP1R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2406005859375 2 405.240661 808.46677 -0.13233 -5.3624E-05 -0.33572 -0.00013605 -0.46805 -0.00018967 405.2402179860721 72.406 0.74734 72.448 72.174 72.921 0.041725 67 35 3 0 0 0 0.81107 1 39756 39756 0 0 1 3933500 69471 2866 46328 47351 81024 81024 0.05487488368498816 VGRALLAVK 9 Unmodified _VGRALLAVK_ 0 0 0 REV__ENST00000416301.5_1_10:97849055-97849924:-|nuORF REV__ENST00000416301.5_1_10:97849055-97849924:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.8117980957031 2 463.810919 925.607286 1.1912 0.0005525 -0.33477 -0.00015527 0.85645 0.00039723 463.81069979564234 37.117 0.37331 32.833 32.65 33.023 -4.2835 36 22 2 0 0 0 0.1773 1 21843 21843 25.399 0 1 12245000 + 69472 26769 46329 47352 81025 81025 0.14150647302085417 VGRARHSL 8 Unmodified _VGRARHSL_ 0 0 0 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 ENSG00000167676|ENST00000301286|PLIN4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 447.7269287109375 2 448.264668 894.514782 1.0832 0.00048557 -0.76328 -0.00034215 0.31994 0.00014342 448.26424820157337 34.816 0.13908 30.721 30.632 30.771 -4.0951 10 7 2 0 0 0 8.7369 1 20079 20079 2.5775 2.5775 1 3442400 69473 7655 46330 47353 81026 81026 0.06330562288553665 VGRARRRVH 9 Unmodified _VGRARRRVH_ 0 0 0 nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 nc|ENSG00000148357|Q8NDA2-4|HMCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.839599609375 2 553.841939 1105.66933 NaN NaN NaN NaN NaN NaN NaN 19.978 1 19.986 19.486 20.486 0.0078487 0 0 0 0.85737 1 10177 10177 0.6015 0 1 69474 5925 46331 47354 81027 81027 0.12071811493774476 VGRAVLPR 8 Unmodified _VGRAVLPR_ 0 0 0 ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF ENST00000489671.5_2_3:141668120-141668426:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2805786132812 2 434.279786 866.54502 1.1764 0.00051089 -0.19086 -8.2885E-05 0.98556 0.00042801 434.27941394863103 102.35 0.42886 96.171 96.003 96.432 -6.1757 65 41 2 0 0 0 0.80992 1 68662 68662 0.69038 0 1 7635600 69475 14242 46332 47355 81028 81028 0.10640920953733257 VGRCERNEIL 10 Unmodified _VGRCERNEIL_ 0 0 0 REV__ENST00000440535.5_1_3:197342537-197350198:-|nuORF REV__ENST00000440535.5_1_3:197342537-197350198:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2096557617188 3 396.87664 1187.60809 NaN NaN NaN NaN NaN NaN NaN 19.778 1 19.806 19.306 20.306 0.028357 0 0 0 1.0004 1 9991 9991 0.62683 0 1 + 69476 26745 46333 47356 81029 81029 0.021790738888284977 VGRCPPAMRL 10 Unmodified _VGRCPPAMRL_ 0 0 0 ENST00000546727.5_1_12:113545343-113557136:-|nuORF;ENST00000548972.5_1_12:113545343-113573291:-|nuORF;ENST00000418411.6_1_12:113540888-113573291:-|nuORF;nc|ENSG00000111344|O95294-2|RASAL1;nc|ENSG00000111344|O95294|RASAL1;ENSG00000111344|ENST00000548055|RASAL1;nc|ENSG00000111344|O95294-3|RASAL1 ENST00000546727.5_1_12:113545343-113557136:-|nuORF ENST00000546727.5_1_12:113545343-113557136:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1850280761719 3 367.200289 1098.57904 -0.74533 -0.00027368 2.106 0.00077331 1.3606 0.00049963 367.201083457565 28.015 0.32507 28.015 27.884 28.209 0 30 19 2 0 0 0 0.23821 1 14428 14428 2.086 2.086 1 4869400 69477 2784 46334 47357 81030 81030 0.03369258058819469 VGRDEPQE 8 Unmodified _VGRDEPQE_ 0 0 0 REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF REV__ENST00000562283.5_1_16:84733615-84766691:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2178039550781 2 465.219788 928.425024 NaN NaN NaN NaN NaN NaN NaN 16.133 1 16.133 15.633 16.633 0 0 0 0 0.97444 1 7841 7841 0.79363 0 1 + 69478 28854 46335 47358 81031 81031 -0.0420515690133243 VGRDFRQQQ 9 Unmodified _VGRDFRQQQ_ 0 0 0 REV__nc|ENSG00000088930|Q9H0D6-2|XRN2 REV__nc|ENSG00000088930|Q9H0D6-2|XRN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5317687988281 3 378.531861 1132.57375 NaN NaN NaN NaN NaN NaN NaN 14.79 1 14.759 14.259 15.259 -0.030868 0 0 0 0.85737 1 7219 7219 0.26902 0 1 + 69479 17820 46336 47359 81032 81032 0.012769937922257668 VGREAVVL 8 Unmodified _VGREAVVL_ 0 0 0 ENST00000333602.10_1_3:195635568-195635940:-|nuORF ENST00000333602.10_1_3:195635568-195635940:-|nuORF ENST00000333602.10_1_3:195635568-195635940:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.7590026855469 2 421.758352 841.502152 0.97462 0.00041106 -0.5922 -0.00024976 0.38243 0.00016129 421.75815905245884 43.163 0.3223 38.398 38.258 38.581 -4.7648 30 22 2 0 0 0 0.5284 1 26179 26179 32.117 0 1 14071000 69480 11881 46337 47360 81033 81033 0.07506106105654453 VGREEARPGP 10 Unmodified _VGREEARPGP_ 0 0 0 ENST00000216121.11_1_22:29951315-29951552:-|nuORF ENST00000216121.11_1_22:29951315-29951552:-|nuORF ENST00000216121.11_1_22:29951315-29951552:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.28369140625 2 534.283254 1066.55196 NaN NaN NaN NaN NaN NaN NaN 26.94 1 26.969 26.469 27.469 0.028664 0 0 0 0.94014 1 13989 13989 6.2058 0.47393 1 69481 11003 46338 47361 81034 81034 0.021341890436588073 VGREIEFIEF 10 Unmodified _VGREIEFIEF_ 0 0 0 REV__ENSG00000168743|ENST00000379987|NPNT REV__ENSG00000168743|ENST00000379987|NPNT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.55078125 3 413.552039 1237.63429 NaN NaN NaN NaN NaN NaN NaN 21.075 1 21.075 20.575 21.575 0 0 0 0 1.0019 1 10640 10640 0.15932 0.01943 1 + 69482 22336 46339 47362 81035 81035 0.02497666331964865 VGRERQKVEL 10 Unmodified _VGRERQKVEL_ 0 0 0 REV__ENST00000478793.1_1_3:113667004-113667634:+|nuORF REV__ENST00000478793.1_1_3:113667004-113667634:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3541259765625 2 607.354211 1212.69387 0.84345 0.00051227 -0.83915 -0.00050966 0.0042988 2.6109E-06 607.3539070653425 20.177 0.3119 17.521 17.351 17.663 -2.6564 56 22 3 0 0 0 0.68209 1 10814 10814 4.897 0.36815 1 12340000 + 69483 27644 46340 47363 81036 81036 0.09602982065985088 VGRFIIGS 8 Unmodified _VGRFIIGS_ 0 0 0 REV__nc|ENSG00000166948|O95932-2|TGM6 REV__nc|ENSG00000166948|O95932-2|TGM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.751220703125 2 424.75307 847.491587 -0.58393 -0.00024803 1.0477 0.00044503 0.46381 0.00019701 424.7535115623487 30.71 0.55048 30.71 30.402 30.953 0 41 26 2 0 0 0 0.80975 2 15866 15866;16000 0.79363 0 1 1929900 + 69484 22168 46341 47364 81037;81038 81037 0.061741234512510346 VGRFIIGS 8 Unmodified _VGRFIIGS_ 0 0 0 REV__nc|ENSG00000166948|O95932-2|TGM6 REV__nc|ENSG00000166948|O95932-2|TGM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.7510375976562 2 424.75307 847.491587 -0.073032 -3.1021E-05 2.517 0.0010691 2.444 0.0010381 424.7540819170716 30.486 0.96764 30.517 30.091 31.059 0.030106 108 42 3 0 0 0 0.80975 3 15783 15783;15869;16100 0.79363 0 1 16383000 + 69485 22168 46341 47364 81039;81040;81041 81039 0.061741234512510346 VGRFIIGS 8 Unmodified _VGRFIIGS_ 0 0 0 REV__nc|ENSG00000166948|O95932-2|TGM6 REV__nc|ENSG00000166948|O95932-2|TGM6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 424.75307 847.491587 -0.073032 -3.1021E-05 2.517 0.0010691 2.444 0.0010381 424.7540819170716 30.486 0.96764 30.517 30.091 31.059 0.030106 -0.096512 0.00040029 NaN 0.79363 108 42 3 NaN NaN NaN NaN 0 NaN NaN 0 16383000 + 69486 22168 46341 47364 0.061741234512510346 VGRFMWLPP 9 Unmodified _VGRFMWLPP_ 0 0 0 REV__ENST00000357022.6_2_2:61405020-61405095:+|nuORF REV__ENST00000357022.6_2_2:61405020-61405095:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2008361816406 3 368.200395 1101.57936 NaN NaN NaN NaN NaN NaN NaN 14.39 1 14.359 13.859 14.859 -0.030868 0 0 0 0.85737 1 6995 6995 0.26902 0 1 + 69487 25837 46342 47365 81042 81042 0.032630010503226003 VGRFNFLYK 9 Unmodified _VGRFNFLYK_ 0 0 0 REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.8806762695312 3 381.881831 1142.62366 -0.62604 -0.00023907 -2.6612 -0.0010163 -3.2873 -0.0012554 381.8806485149263 14.894 0.055641 14.894 14.862 14.918 0 24 16 2 0 0 0 0.61256 1 7121 7121 0.26902 0 1 741370 + 69488 21758 46343 47366 81043 81043 0.058057284681808596 VGRFNFLYK 9 Unmodified _VGRFNFLYK_ 0 0 0 REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.8807373046875 3 381.881831 1142.62366 NaN NaN NaN NaN NaN NaN NaN 14.874 1 14.88 14.38 15.38 0.0057774 0 0 0 0.85737 1 7392 7392 0.26902 0 1 + 69489 21758 46343 47366 81044 81044 0.058057284681808596 VGRFNFLYK 9 Unmodified _VGRFNFLYK_ 0 0 0 REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 381.881831 1142.62366 -0.62604 -0.00023907 -2.6612 -0.0010163 -3.2873 -0.0012554 381.8806485149263 14.894 0.055641 14.894 14.862 14.918 0 0.039821 -5.4834E-05 NaN 0.26902 24 16 2 NaN NaN NaN NaN 0 NaN NaN 0 741370 + 69490 21758 46343 47366 0.058057284681808596 VGRFNFLYK 9 Unmodified _VGRFNFLYK_ 0 0 0 REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 381.881831 1142.62366 -0.55086 -0.00021036 -1.8821 -0.00071875 -2.433 -0.00092911 381.88100491917237 14.87 0.049683 14.839 14.817 14.867 -0.030868 -0.015057 0.00083776 NaN 0.26902 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 399040 + 69491 21758 46343 47366 0.058057284681808596 VGRFNFLYK 9 Unmodified _VGRFNFLYK_ 0 0 0 REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF REV__ENST00000486607.5_1_3:119198882-119211282:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 381.881831 1142.62366 0.017945 6.8527E-06 -2.9739 -0.0011357 -2.956 -0.0011288 381.88081240783157 14.823 0.073191 14.829 14.795 14.868 0.0057774 -0.024763 -0.00041302 NaN 0.26902 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 649540 + 69492 21758 46343 47366 0.058057284681808596 VGRGCPAK 8 Unmodified _VGRGCPAK_ 0 0 0 REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2229919433594 2 394.215798 786.417042 -0.1491 -5.8779E-05 -1.4816 -0.00058406 -1.6307 -0.00064284 394.2149412931141 37.875 0.35191 37.892 37.673 38.025 0.01704 42 16 3 0 0 0 0.80975 1 20196 20196 0.79363 0 1 38494000 + 69493 25541 46344 47367 81045 81045 0.015290373681864367 VGRGCPAK 8 Unmodified _VGRGCPAK_ 0 0 0 REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2152404785156 2 394.215798 786.417042 -0.17908 -7.0595E-05 -1.7392 -0.0006856 -1.9182 -0.0007562 394.2151273394912 44.514 0.24678 44.491 44.366 44.612 -0.022068 19 12 2 0 0 0 0.80975 1 23868 23868 0.79363 0 1 10560000 + 69494 25541 46344 47367 81046 81046 0.015290373681864367 VGRGCPAK 8 Unmodified _VGRGCPAK_ 0 0 0 REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.215798 786.417042 0.029438 1.1605E-05 -1.9519 -0.00076948 -1.9225 -0.00075787 394.2149164198703 38.531 0.27022 38.245 38.092 38.363 -0.28687 0.17605 -0.00012598 NaN 0.79363 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3286200 + 69495 25541 46344 47367 0.015290373681864367 VGRGCPAK 8 Unmodified _VGRGCPAK_ 0 0 0 REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF REV__ENST00000324856.11_1_1:27101183-27101231:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 394.215798 786.417042 -0.1491 -5.8779E-05 -1.4816 -0.00058406 -1.6307 -0.00064284 394.2149412931141 37.875 0.35191 37.892 37.673 38.025 0.01704 -0.17605 0.00024484 NaN 0.79363 42 16 3 NaN NaN NaN NaN 0 NaN NaN 0 38494000 + 69496 25541 46344 47367 0.015290373681864367 VGRGERLF 8 Unmodified _VGRGERLF_ 0 0 0 ENST00000537166.5_2_6:128239606-128239699:-|nuORF ENST00000537166.5_2_6:128239606-128239699:-|nuORF ENST00000537166.5_2_6:128239606-128239699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.266845703125 2 467.266876 932.519199 NaN NaN NaN NaN NaN NaN NaN 18.961 1 18.967 18.467 19.467 0.0060463 0 0 0 0.97444 1 9629 9629 0.79363 0 1 69497 14988 46345 47368 81047 81047 0.05024026711453189 VGRGKCLG 8 Unmodified _VGRGKCLG_ 0 0 0 ENST00000341509.9_1_15:66857042-66857603:-|nuORF;ENST00000565875.5_1_15:66857042-66858257:-|nuORF ENST00000341509.9_1_15:66857042-66857603:-|nuORF ENST00000341509.9_1_15:66857042-66857603:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2227783203125 2 395.223623 788.432692 -0.93003 -0.00036757 -1.3546 -0.00053535 -2.2846 -0.00090292 395.2229602994227 32.173 0.45468 32.173 31.9 32.355 0 36 22 2 0 0 0 0.80975 2 16706 16706;16817 0.79363 0 1 2080900 69498 11968 46346 47369 81048;81049 81048 0.030013238852347968 VGRGLLGLLLL 11 Unmodified _VGRGLLGLLLL_ 0 0 0 REV__ENSG00000108556|ENST00000649488|CHRNE REV__ENSG00000108556|ENST00000649488|CHRNE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5353088378906 3 375.256898 1122.74886 NaN NaN NaN NaN NaN NaN NaN 28.849 1 28.879 28.379 29.379 0.030106 0 0 0 0.94165 1 15032 15032 0.45452 0.29519 1 + 69499 18614 46347 47370 81050 81050 0.1924002060454768 VGRGPRGR 8 Unmodified _VGRGPRGR_ 0 0 0 REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.7554321289062 2 427.75701 853.499467 NaN NaN NaN NaN NaN NaN NaN 17.965 1 17.971 17.471 18.471 0.0060463 0 0 0 0.97444 1 9085 9085 0.79363 0 1 + 69500 24781 46348 47371 81051 81051 0.0668569549136464 VGRGQAAK 8 Unmodified _VGRGQAAK_ 0 0 0 CON__Q28107 CON__Q28107 CON__Q28107 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.7324523925781 2 393.732669 785.450785 -0.035982 -1.4167E-05 -0.622 -0.0002449 -0.65798 -0.00025907 393.73240590051773 18.736 0.16196 18.742 18.658 18.82 0.0060463 13 7 2 0 0 0 0.78849 1 9505 9505 9.3474 0 1 4088500 + 69501 188 46349 47372 81052 81052 0.049477821315917936 VGRGQHWGVL 10 Unmodified _VGRGQHWGVL_ 0 0 0 ENST00000573596.1_1_17:7080113-7080528:-|nuORF ENST00000573596.1_1_17:7080113-7080528:-|nuORF ENST00000573596.1_1_17:7080113-7080528:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.7784423828125 2 554.804157 1107.59376 1.331 0.00073845 1.6094 0.00089289 2.9404 0.0016313 554.8052137512055 94.398 0.25719 88.222 87.976 88.233 -6.1757 25 14 2 0 0 0 0.22667 1 62428 62428 15.847 9.124 1 10556000 69502 15502 46350 47373 81053 81053 0.04426789522835861 VGRGTYGHVY 10 Unmodified _VGRGTYGHVY_ 0 0 0 ENST00000460913.1_1_6:110991731-111136363:-|nuORF;ENST00000457688.5_2_6:111067381-111136294:-|nuORF;nc|ENSG00000132964|P49336-2|CDK8;ENSG00000132964|ENST00000381527|CDK8;ENSG00000155111|ENST00000368911|CDK19 ENST00000460913.1_1_6:110991731-111136363:-|nuORF ENST00000460913.1_1_6:110991731-111136363:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 369.8574523925781 3 370.189324 1107.54614 NaN NaN NaN NaN NaN NaN NaN 14.996 1 12.469 11.969 12.969 -2.5273 0 0 0 0.98914 1 7659 7659 0.77653 0.14971 1 69503 4472 46351 47374 81054 81054 -0.003329094680111666 VGRGVPTA 8 Unmodified _VGRGVPTA_ 0 0 0 REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF REV__ENST00000353383.5_2_17:17713366-17713792:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.4702758789062 2 378.72177 755.428987 NaN NaN NaN NaN NaN NaN NaN 14.648 1 14.617 14.117 15.117 -0.030868 0 0 0 0.97444 1 7142 7142 0.79363 0 1 + 69504 25790 46352 47375 81055 81055 0.041489773830221566 VGRGVRHL 8 Unmodified _VGRGVRHL_ 0 0 0 REV__ENSG00000228567|ENST00000311170|VN1R4 REV__ENSG00000228567|ENST00000311170|VN1R4 MSMS AL20221201_MKP_PDAC_01 4 447.2742309570312 2 447.275035 892.535518 NaN NaN NaN NaN NaN NaN NaN 18.336 1 15.714 15.214 16.214 -2.6215 0 0 0 0.97444 1 9651 9651 2.8892 0 1 + 69505 24398 46353 47376 81056 81056 0.08495152668206174 VGRGWGEL 8 Unmodified _VGRGWGEL_ 0 0 0 REV__ENSG00000067191|ENST00000394303|CACNB1 REV__ENSG00000067191|ENST00000394303|CACNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.233642578125 2 437.232502 872.450451 0.77965 0.00034089 1.0576 0.0004624 1.8372 0.00080329 437.2329550061961 52.224 0.24189 52.165 52.067 52.309 -0.058918 18 11 2 0 0 0 0.80624 1 28288 28288 2.8892 2.8892 1 2470100 + 69506 17417 46354 47377 81057 81057 0.009123624117705731 VGRIHRHL 8 Unmodified _VGRIHRHL_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2 ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.3019104003906 2 494.301585 986.588616 1.2909 0.00063811 -1.2461 -0.00061596 0.044801 2.2145E-05 494.3008659805779 97.817 0.55872 91.642 91.349 91.908 -6.1757 102 35 4 0 0 0 0.80975 1 64916 64916 0.79363 0.19213 1 220420000 69507 14604 46355 47378 81058 81058 0.09478530450871858 VGRIRTQLR 9 Unmodified _VGRIRTQLR_ 0 0 0 REV__ENST00000394833.6_1_4:103266163-103266220:-|nuORF REV__ENST00000394833.6_1_4:103266163-103266220:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8975524902344 3 366.899996 1097.67816 NaN NaN NaN NaN NaN NaN NaN 19.196 1 19.203 18.703 19.703 0.0078487 0 0 0 0.86004 1 9756 9756 0.26902 0 1 + 69508 26457 46356 47379 81059 81059 0.1332274033959493 VGRKKFLFL 9 Unmodified _VGRKKFLFL_ 0 0 0 ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9064331054688 3 369.906088 1106.69644 0.51913 0.00019203 1.0296 0.00038087 1.5488 0.0005729 369.90640668128555 36.463 0.42091 36.463 36.269 36.69 0 38 20 3 0 0 0 0.61801 1 19275 19275 0.26902 0 1 9719200 69509 11500 46357 47380 81060 81060 0.14735482261608013 VGRKKFLFL 9 Unmodified _VGRKKFLFL_ 0 0 0 ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF ENST00000295924.11_2_3:156423417-156423531:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 369.906088 1106.69644 0.51913 0.00019203 1.0296 0.00038087 1.5488 0.0005729 369.90640668128555 36.463 0.42091 36.463 36.269 36.69 0 0 0 NaN 0.26902 38 20 3 NaN NaN NaN NaN 0 NaN NaN 0 9719200 69510 11500 46357 47380 0.14735482261608013 VGRKKVATK 9 Unmodified _VGRKKVATK_ 0 0 0 ENST00000480284.1_1_7:156803978-156808688:+|nuORF ENST00000480284.1_1_7:156803978-156808688:+|nuORF ENST00000480284.1_1_7:156803978-156808688:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.8270874023438 2 493.827101 985.639649 -0.37792 -0.00018663 0.83652 0.00041309 0.4586 0.00022647 493.8274403377263 102.64 0.41083 102.59 102.4 102.81 -0.047928 24 13 2 0 0 0 0.59218 1 56989 56989 1.8442 1.2427 1 1847600 69511 14055 46358 47381 81061 81061 0.14625434705078533 VGRKKVATK 9 Unmodified _VGRKKVATK_ 0 0 0 ENST00000480284.1_1_7:156803978-156808688:+|nuORF ENST00000480284.1_1_7:156803978-156808688:+|nuORF ENST00000480284.1_1_7:156803978-156808688:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.827101 985.639649 0.51647 0.00025505 -0.30208 -0.00014918 0.21439 0.00010587 493.82678547023426 102.66 0.32896 102.55 102.38 102.71 -0.10458 -0.020241 -0.00062907 NaN 1.8442 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 253660 69512 14055 46358 47381 0.14625434705078533 VGRKKWKSS 9 Unmodified _VGRKKWKSS_ 0 0 0 ENSG00000136696|ENST00000259213|IL36B ENSG00000136696|ENST00000259213|IL36B ENSG00000136696|ENST00000259213|IL36B MSMS AL20221201_MKP_PDAC_01 4 359.2177734375 3 359.217214 1074.62981 NaN NaN NaN NaN NaN NaN NaN 15.682 1 13.154 12.654 13.654 -2.5273 0 0 0 0.85447 1 8068 8068 0.96228 0 1 69513 4844 46359 47382 81062 81062 0.09548246699705487 VGRKNGGV 8 Unmodified _VGRKNGGV_ 0 0 0 ENST00000592670.5_1_17:40911856-40912668:-|nuORF;ENST00000589716.5_1_17:40911856-40912972:-|nuORF ENST00000592670.5_1_17:40911856-40912668:-|nuORF ENST00000592670.5_1_17:40911856-40912668:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.7329711914062 2 393.732669 785.450785 -0.53549 -0.00021084 0.98704 0.00038863 0.45155 0.00017779 393.73298107979053 18.694 0.13032 18.717 18.653 18.784 0.023106 24 16 2 0 0 0 0.80676 1 9381 9381 2.5775 0 1 741820 69514 15676 46360 47383 81063 81063 0.04947782131614531 VGRKRLRSL 9 Unmodified _VGRKRLRSL_ 0 0 0 REV__ENSG00000107872|ENST00000369956|FBXL15 REV__ENSG00000107872|ENST00000369956|FBXL15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.241943359375 3 362.240241 1083.69889 NaN NaN NaN NaN NaN NaN NaN 33.744 1 33.773 33.273 34.273 0.028934 0 0 0 0.82396 1 17764 17764 2.7352 0.64919 1 + 69515 18582 46361 47384 81064 81064 0.1603933071926349 VGRKSVVTR 9 Unmodified _VGRKSVVTR_ 0 0 0 REV__ENST00000538160.1_1_12:514707-527878:+|nuORF REV__ENST00000538160.1_1_12:514707-527878:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.3145751953125 2 501.314358 1000.61416 NaN NaN NaN NaN NaN NaN NaN 17.191 1 17.196 16.696 17.696 0.0050564 0 0 0 0.84564 1 8660 8660 2.0598 0 1 + 69516 19250 46362 47385 81065 81065 0.11387960182651113 VGRLEEEK 8 Unmodified _VGRLEEEK_ 0 0 0 ENST00000394487.4_1_9:120466610-120466751:+|nuORF ENST00000394487.4_1_9:120466610-120466751:+|nuORF ENST00000394487.4_1_9:120466610-120466751:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7171630859375 2 480.261456 958.50836 -0.23757 -0.00011409 0.090929 4.3669E-05 -0.14664 -7.0425E-05 480.2614451915514 20.577 0.2505 20.577 20.42 20.671 0 53 27 3 0 0 0 0.80624 1 10355 10355 2.8892 0 1 2306600 69517 12742 46363 47386 81066 81066 0.02744579546526893 VGRLNELL 8 Unmodified _VGRLNELL_ 0 0 0 nc|ENSG00000126602|Q12931-2|TRAP1;ENSG00000126602|ENST00000246957|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 nc|ENSG00000126602|Q12931-2|TRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2776489257812 2 457.276909 912.539266 0.095059 4.3468E-05 0.45748 0.0002092 0.55254 0.00025266 457.27713269516295 23.745 0.17849 23.745 23.694 23.873 0 12 8 2 0 0 0 0.80624 1 12124 12124 2.8892 0 1 449470 69518 3959 46364 47387 81067 81067 0.07949777651424483 VGRLPALR 8 Unmodified _VGRLPALR_ 0 0 0 REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.287353515625 2 441.287611 880.56067 0.28564 0.00012605 -1.0573 -0.00046655 -0.77161 -0.0003405 441.2869966501759 102.34 0.45747 102.34 102.11 102.57 0 29 21 2 0 0 0 0.81107 1 56457 56457 0 0 1 546230 + 69519 25947 46365 47388 81068 81068 0.11561207470776935 VGRLPALR 8 Unmodified _VGRLPALR_ 0 0 0 REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2868041992188 2 441.287611 880.56067 0.28798 0.00012708 -0.94852 -0.00041857 -0.66055 -0.00029149 441.2869665755217 102.39 0.49532 102.27 102.05 102.54 -0.11613 37 22 2 0 0 0 0.81107 2 55818 55818;55923 0 0 1 838670 + 69520 25947 46365 47388 81069;81070 81069 0.11561207470776935 VGRLPCSI 8 Unmodified _VGRLPCSI_ 0 0 0 REV__ENSG00000164037|ENST00000296422|SLC9B1 REV__ENSG00000164037|ENST00000296422|SLC9B1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5718383789062 2 422.739105 843.463658 0.57001 0.00024097 -0.092939 -3.9289E-05 0.47707 0.00020168 422.73876668393217 52.271 0.26215 52.212 52.047 52.309 -0.058918 22 12 2 0 0 0 8.7369 1 28252 28252 2.8892 0 1 1789700 + 69521 21852 46366 47389 81071 81071 0.03566477199467499 VGRLRLAD 8 Unmodified _VGRLRLAD_ 0 0 0 REV__ENST00000528878.1_1_7:64465346-64465520:-|nuORF REV__ENST00000528878.1_1_7:64465346-64465520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2746887207031 2 450.274701 898.534849 0.50216 0.00022611 -0.078707 -3.544E-05 0.42345 0.00019067 450.27451827360505 82.645 0.48783 82.148 81.892 82.38 -0.49751 49 20 3 0 0 0 0.81107 1 45257 45257 0 0 1 4591100 + 69522 28414 46367 47390 81072 81072 0.08152313228492858 VGRMKQPKL 9 Unmodified _VGRMKQPKL_ 0 0 0 REV__ENST00000490826.1_1_1:33245684-33245969:-|nuORF REV__ENST00000490826.1_1_1:33245684-33245969:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8832702636719 3 352.883066 1055.62737 NaN NaN NaN NaN NaN NaN NaN 18.283 1 18.297 17.797 18.797 0.013865 0 0 0 0.84369 1 9156 9156 1.1933 0 1 + 69523 20000 46368 47391 81073 81073 0.10178074970394846 VGRNECREI 9 Unmodified _VGRNECREI_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3;FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1813354492188 3 359.181952 1074.52403 -1.2498 -0.00044892 0.70893 0.00025463 -0.5409 -0.00019428 359.51652690126156 32.482 0.16478 32.482 32.454 32.618 0 17 10 2 0 0 0 0.58466 1 17039 17039 1.1933 0 1 7412400 69524 5414 46369 47392 81074 81074 -0.010254572080839353 VGRNECREI 9 Unmodified _VGRNECREI_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3;FBN3|p.G1959Wfs*7|1|0.42|ENSG00000142449|chr19:8094477-8094478|-/T|frameshift_variant ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 359.181952 1074.52403 -1.2498 -0.00044892 0.70893 0.00025463 -0.5409 -0.00019428 359.51652690126156 32.482 0.16478 32.482 32.454 32.618 0 0 0 NaN 1.1933 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 7412400 69525 5414 46369 47392 -0.010254572080839353 VGRNKRFR 8 Unmodified _VGRNKRFR_ 0 0 0 ENST00000215754.7_1_22:24237348-24237408:+|nuORF ENST00000215754.7_1_22:24237348-24237408:+|nuORF ENST00000215754.7_1_22:24237348-24237408:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8126831054688 2 516.812316 1031.61008 NaN NaN NaN NaN NaN NaN NaN 14.861 1 14.866 14.366 15.366 0.0057774 0 0 0 0.97444 1 7385 7385 0.79363 0.10326 1 69526 10995 46370 47393 81075 81075 0.09553915479591524 VGRNPLWL 8 Unmodified _VGRNPLWL_ 0 0 0 ENST00000519604.5_1_20:61919777-61919975:+|nuORF ENST00000519604.5_1_20:61919777-61919975:+|nuORF ENST00000519604.5_1_20:61919777-61919975:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.78076171875 2 477.779619 953.544686 0.45328 0.00021657 2.0985 0.0010026 2.5518 0.0012192 477.78034575322187 40.591 0.14157 40.596 40.509 40.65 0.0050583 10 6 2 0 0 0 0.80624 1 21675 21675 2.8892 0.31174 1 1516500 69527 14709 46371 47394 81076 81076 0.06605501233900668 VGRNRRLHF 9 Unmodified _VGRNRRLHF_ 0 0 0 REV__ENSG00000187730|ENST00000378585|GABRD REV__ENSG00000187730|ENST00000378585|GABRD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2384033203125 2 577.836323 1153.65809 NaN NaN NaN NaN NaN NaN NaN 14.489 1 14.497 13.997 14.997 0.0073986 0 0 0 0.85737 1 7185 7185 0.6015 0.076735 1 + 69528 23654 46372 47395 81077 81077 0.08740989399643695 VGRNVACWF 9 Unmodified _VGRNVACWF_ 0 0 0 CON__Q0V8M9 CON__Q0V8M9 CON__Q0V8M9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.260009765625 2 526.260736 1050.50692 0.44578 0.0002346 1.6709 0.00087933 2.1167 0.0011139 526.2614360828087 77.962 0.54137 77.962 77.75 78.291 0 31 23 2 0 0 0 0.54444 1 43491 43491 4.756 1.8668 1 724360 + 69529 182 46373 47396 81078 81078 -0.016313330232378576 VGRPGRGL 8 Unmodified _VGRPGRGL_ 0 0 0 REV__ENST00000443120.5_1_2:97506274-97506418:-|nuORF REV__ENST00000443120.5_1_2:97506274-97506418:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2809753417969 2 406.248486 810.48242 0.016418 6.6699E-06 -0.099461 -4.0406E-05 -0.083043 -3.3736E-05 406.2483018942953 76.577 0.56974 76.098 75.909 76.479 -0.47945 88 33 4 0 0 0 8.7369 1 42132 42132 0.79363 0 1 13392000 + 69530 27109 46374 47397 81079 81079 0.06959774885547176 VGRPKLDLIL 10 Unmodified _VGRPKLDLIL_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8713989257812 3 375.24477 1122.71248 0.6127 0.00022991 0.0075811 2.8448E-06 0.62028 0.00023276 375.2448235976375 47.555 0.19941 47.516 47.34 47.54 -0.038643 13 8 2 0 0 0 0.24005 1 25636 25636 0.77653 0 1 939610 + 69531 19637 46375 47398 81080 81080 0.1560314370785818 VGRPQPQL 8 Unmodified _VGRPQPQL_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.7615051269531 2 447.761426 893.5083 0.67161 0.00030072 -0.027798 -1.2447E-05 0.64381 0.00028827 447.76142010502497 32.86 0.36827 29.004 28.776 29.144 -3.8562 31 20 2 0 0 0 0.37649 2 18699 18699;18834 46.921 2.5139 1 21186000 69532 3104 46376 47399 81081;81082 81081 0.057286243371777346 VGRPRSGP 8 Unmodified _VGRPRSGP_ 0 0 0 MAP1LC3A|p.S90Cfs*57|1|0.29|ENSG00000101460|chr20:34559797-34559800|GTGA/-|frameshift_variant MAP1LC3A|p.S90Cfs*57|1|0.29|ENSG00000101460|chr20:34559797-34559800|GTGA/-|frameshift_variant MAP1LC3A|p.S90Cfs*57|1|0.29|ENSG00000101460|chr20:34559797-34559800|GTGA/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2383422851562 2 413.238119 824.461684 1.2107 0.00050029 -0.20236 -8.3622E-05 1.0083 0.00041667 413.2379053927016 88.684 0.48676 82.508 82.24 82.727 -6.1757 35 26 2 0 0 0 0.80722 1 58427 58427 2.3027 0 1 14290000 69533 15984 46377 47400 81083 81083 0.04243184505901354 VGRPRTAP 8 Unmodified _VGRPRTAP_ 0 0 0 REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.252197265625 2 427.253769 852.492984 NaN NaN NaN NaN NaN NaN NaN 102.65 1 102.61 102.11 103.11 -0.047928 0 0 0 0.97444 1 57017 57017 2.5775 0 1 + 69534 26768 46378 47401 81084 81084 0.060837575399773414 VGRPRVSF 8 Unmodified _VGRPRVSF_ 0 0 0 REV__ENST00000438163.1_1_2:32428025-32428073:+|nuORF REV__ENST00000438163.1_1_2:32428025-32428073:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7147521972656 2 459.269419 916.524284 NaN NaN NaN NaN NaN NaN NaN 32.55 1 32.421 31.921 32.921 -0.12915 0 0 0 0.97444 1 16951 16951 2.8892 0.31174 1 + 69535 27048 46379 47402 81085 81085 0.06268330574084757 VGRPSPGF 8 Unmodified _VGRPSPGF_ 0 0 0 ENST00000460087.1_1_22:50755275-50757393:-|nuORF ENST00000460087.1_1_22:50755275-50757393:-|nuORF ENST00000460087.1_1_22:50755275-50757393:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.7244262695312 2 408.72177 815.428987 1.4678 0.00059993 1.9939 0.00081493 3.4617 0.0014149 408.7237358202033 95.727 0.68001 89.552 89.264 89.944 -6.1757 72 41 2 0 0 0 0.78849 1 63345 63345 9.3474 0 1 12863000 69536 13635 46380 47403 81086 81086 0.01388977383044221 VGRPVVGQ 8 Unmodified _VGRPVVGQ_ 0 0 0 REV__ENSG00000124491|ENST00000264870|F13A1 REV__ENSG00000124491|ENST00000264870|F13A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2431640625 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 14.982 1 14.966 14.466 15.466 -0.016016 0 0 0 0.97444 1 7325 7325 0.79363 0 1 + 69537 19450 46381 47404 81087 81087 0.05836952791423755 VGRPVVGQ 8 Unmodified _VGRPVVGQ_ 0 0 0 REV__ENSG00000124491|ENST00000264870|F13A1 REV__ENSG00000124491|ENST00000264870|F13A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8456115722656 2 406.24287 810.471186 NaN NaN NaN NaN NaN NaN NaN 19.987 1 19.995 19.495 20.495 0.0078487 0 0 0 0.97444 1 10182 10182 0.79363 0 1 + 69538 19450 46381 47404 81088 81088 0.05836952791423755 VGRQKKQPI 9 Unmodified _VGRQKKQPI_ 0 0 0 REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF REV__ENST00000520639.1_1_5:153873511-153874012:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.1749877929688 3 351.889097 1052.64546 -0.27619 -9.719E-05 -1.397 -0.00049158 -1.6732 -0.00058877 352.22295996317007 32.249 0.1284 32.279 32.237 32.366 0.029747 7 5 2 0 0 0 0.21367 1 16957 16957 2.7352 0.23671 1 1455700 + 69539 28281 46382 47405 81089 81089 0.12124533216751843 VGRQLQYRL 9 Unmodified _VGRQLQYRL_ 0 0 0 REV__ENSG00000264006|ENST00000648824|AKR1C8 REV__ENSG00000264006|ENST00000648824|AKR1C8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.22509765625 3 378.224368 1131.65128 1.6919 0.00063992 -2.06 -0.00077916 -0.36813 -0.00013923 378.2235571352176 21.56 0.39462 18.825 18.64 19.034 -2.7348 75 31 3 0 0 0 0.40476 1 11578 11578 12.241 0 1 8902200 + 69540 24599 46383 47406 81090 81090 0.0907163172842047 VGRQPRLI 8 Unmodified _VGRQPRLI_ 0 0 0 REV__ENSG00000116711|ENST00000367466|PLA2G4A REV__ENSG00000116711|ENST00000367466|PLA2G4A MSMS AL20221201_MKP_PDAC_01 4 470.1129455566406 2 469.798343 937.582134 NaN NaN NaN NaN NaN NaN NaN 12.109 1 9.6275 9.1275 10.127 -2.482 0 0 0 0.97444 1 6111 6111 0.79363 0 1 + 69541 19061 46384 47407 81091 81091 0.11084592499514656 VGRQQRDPF 9 Unmodified _VGRQQRDPF_ 0 0 0 NFKBIZ|p.G109D|1|0.21|ENSG00000144802|chr3:101852121-101852121|G/A|missense_variant NFKBIZ|p.G109D|1|0.21|ENSG00000144802|chr3:101852121-101852121|G/A|missense_variant NFKBIZ|p.G109D|1|0.21|ENSG00000144802|chr3:101852121-101852121|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7921142578125 2 551.791247 1101.56794 0.40804 0.00022515 2.1594 0.0011915 2.5674 0.0014167 551.7923725837406 83.509 0.29988 83.509 83.315 83.615 0 25 14 2 0 0 0 0.58466 1 46265 46265 2.3027 0.4585 1 479160 69542 16668 46385 47408 81092 81092 0.02121895280561148 VGRRAAKA 8 Unmodified _VGRRAAKA_ 0 0 0 nc|ENSG00000177138|Q8IZU0-2|FAM9B nc|ENSG00000177138|Q8IZU0-2|FAM9B nc|ENSG00000177138|Q8IZU0-2|FAM9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.5166625976562 1 828.516245 827.508969 0.38728 0.00032087 -0.91794 -0.00076053 -0.53066 -0.00043966 828.5154190211292 76.103 0.40599 76.151 75.946 76.352 0.047951 35 16 3 0 0 0 0.80975 2 41915 41915;42025 0.79363 0 1 21486000 69543 16403 46386 47409 81093;81094 81093 0.08831463776880355 VGRRAAKA 8 Unmodified _VGRRAAKA_ 0 0 0 nc|ENSG00000177138|Q8IZU0-2|FAM9B nc|ENSG00000177138|Q8IZU0-2|FAM9B nc|ENSG00000177138|Q8IZU0-2|FAM9B MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.5169067382812 1 828.516245 827.508969 1.1322 0.00093804 -0.2466 -0.00020432 0.88559 0.00073373 828.5157886717358 87.243 0.47134 81.067 80.806 81.277 -6.1757 44 25 2 0 0 0 0.80975 1 57510 57510 0.79363 0 1 30861000 69544 16403 46386 47409 81095 81095 0.08831463776880355 VGRRANIDR 9 Unmodified _VGRRANIDR_ 0 0 0 ENST00000294072.8_2_11:61116358-61116451:-|nuORF ENST00000294072.8_2_11:61116358-61116451:-|nuORF ENST00000294072.8_2_11:61116358-61116451:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.871826171875 3 352.872218 1055.59482 NaN NaN NaN NaN NaN NaN NaN 17.302 1 17.316 16.816 17.816 0.013865 0 0 0 0.85737 1 8592 8592 0.26902 0 1 69545 11480 46387 47410 81096 81096 0.0692500389172892 VGRRAPLA 8 Unmodified _VGRRAPLA_ 0 0 0 REV__ENST00000295754.9_1_3:30648085-30686250:+|nuORF;REV__ENST00000359013.4_1_3:30648217-30664756:+|nuORF REV__ENST00000295754.9_1_3:30648085-30686250:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2638854980469 2 420.264136 838.51372 0.092479 3.8866E-05 -0.78597 -0.00033031 -0.69349 -0.00029145 420.26390160711577 34.019 0.12996 34.047 33.973 34.103 0.028934 8 5 2 0 0 0 0.80975 1 17938 17938 0.79363 0 1 955100 + 69546 25263;25883 46388 47411 81097 81097 0.08800347919634532 VGRRCKRI 8 Unmodified _VGRRCKRI_ 0 0 0 ENST00000411689.6_1_6:46620850-46623676:+|nuORF ENST00000411689.6_1_6:46620850-46623676:+|nuORF ENST00000411689.6_1_6:46620850-46623676:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3031616210938 2 494.30327 986.591987 NaN NaN NaN NaN NaN NaN NaN 88.966 1 89.014 88.514 89.514 0.047852 0 0 0 0.97444 1 49494 49494 0.79363 0 1 69547 12977 46389 47412 81098 81098 0.09815457233230518 VGRREKGF 8 Unmodified _VGRREKGF_ 0 0 0 ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN ENSG00000107611|ENST00000377833|CUBN MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.7720336914062 2 474.772326 947.530098 0.16323 7.7496E-05 0.051325 2.4368E-05 0.21455 0.00010186 474.7723189236432 16.05 0.27274 13.493 13.401 13.674 -2.557 71 53 2 0 0 0 0.80311 1 8289 8289 4.756 0 1 3812300 69548 2505 46390 47413 81099 81099 0.05423429085760745 VGRRGAAD 8 Unmodified _VGRRGAAD_ 0 0 0 REV__ENST00000334186.8_1_19:49653994-49654252:+|nuORF REV__ENST00000334186.8_1_19:49653994-49654252:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.219482421875 2 401.219926 800.425299 NaN NaN NaN NaN NaN NaN NaN 14.926 1 14.895 14.395 15.395 -0.030868 0 0 0 0.97444 1 7296 7296 0.79363 0 1 + 69549 25626 46391 47414 81100 81100 0.01710307609175743 VGRRKEPEV 9 Unmodified _VGRRKEPEV_ 0 0 0 ENST00000265986.10_1_10:94267887-94268517:-|nuORF ENST00000265986.10_1_10:94267887-94268517:-|nuORF ENST00000265986.10_1_10:94267887-94268517:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.8623962402344 3 357.208607 1068.60399 -0.41489 -0.0001482 3.4835 0.0012443 3.0686 0.0010961 357.21000931926636 35.448 0.094196 35.226 35.151 35.245 -0.2224 5 3 2 0 0 0 0.21819 1 18562 18562 1.0715 0 1 923040 69550 11339 46392 47415 81101 81101 0.07243352457408037 VGRRLERWL 9 Unmodified _VGRRLERWL_ 0 0 0 ENSG00000161904|ENST00000293760|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5716247558594 3 395.57188 1183.69381 NaN NaN NaN NaN NaN NaN NaN 15.082 1 15.082 14.582 15.582 0 0 0 0 0.85737 1 7235 7235 0.26902 0 1 69551 6814 46393 47416 81102 81102 0.1093102685665599 VGRRLRDSL 9 Unmodified _VGRRLRDSL_ 0 0 0 ENSG00000177646|ENST00000308982|ACAD9;ENST00000511325.1_1_3:128623240-128628375:+|nuORF ENSG00000177646|ENST00000308982|ACAD9 ENSG00000177646|ENST00000308982|ACAD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8833312988281 3 357.884235 1070.63087 2.3593 0.00084435 -2.8643 -0.0010251 -0.50499 -0.00018073 357.8827991626716 41.777 0.31553 37.169 37.03 37.345 -4.6079 31 19 2 0 0 0 0.46501 1 25180 25180 9.3831 3.6513 1 3601500 69552 8697 46394 47417 81103 81103 0.09838461068602555 VGRRMPLW 8 Unmodified _VGRRMPLW_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;nc|ENSG00000166912|Q9NXD2-2|MTMR10;ENST00000568547.5_1_15:31233444-31253097:-|nuORF;ENST00000565728.5_1_15:31239263-31253097:-|nuORF;ENST00000568604.5_1_15:31235080-31253097:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7876586914062 2 507.786921 1013.55929 -0.13254 -6.7302E-05 1.7209 0.00087385 1.5884 0.00080655 507.78792825467923 19.997 0.14882 19.997 19.932 20.081 0 26 17 2 0 0 0 0.80676 1 10030 10030 2.5775 0.27475 1 1395700 69553 7550 46395 47418 81104 81104 0.05305250110382076 VGRRMPLW 8 Unmodified _VGRRMPLW_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;nc|ENSG00000166912|Q9NXD2-2|MTMR10;ENST00000568547.5_1_15:31233444-31253097:-|nuORF;ENST00000565728.5_1_15:31239263-31253097:-|nuORF;ENST00000568604.5_1_15:31235080-31253097:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.788818359375 2 507.786921 1013.55929 NaN NaN NaN NaN NaN NaN NaN 19.886 1 19.915 19.415 20.415 0.028357 0 0 0 0.97444 1 10049 10049 2.5775 0.27475 1 69554 7550 46395 47418 81105 81105 0.05305250110382076 VGRRMPLW 8 Unmodified _VGRRMPLW_ 0 0 0 ENSG00000166912|ENST00000435680|MTMR10;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;nc|ENSG00000166912|Q9NXD2-2|MTMR10;ENST00000568547.5_1_15:31233444-31253097:-|nuORF;ENST00000565728.5_1_15:31239263-31253097:-|nuORF;ENST00000568604.5_1_15:31235080-31253097:-|nuORF ENSG00000166912|ENST00000435680|MTMR10 ENSG00000166912|ENST00000435680|MTMR10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 507.786921 1013.55929 -0.13254 -6.7302E-05 1.7209 0.00087385 1.5884 0.00080655 507.78792825467923 19.997 0.14882 19.997 19.932 20.081 0 0 0 NaN 2.5775 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1395700 69555 7550 46395 47418 0.05305250110382076 VGRRPGKMLL 10 Unmodified _VGRRPGKMLL_ 0 0 0 REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2328491210938 3 376.234099 1125.68047 NaN NaN NaN NaN NaN NaN NaN 15.277 1 15.277 14.777 15.777 0 0 0 0 0.98914 1 7344 7344 0.77653 0.50751 1 + 69556 17237 46396 47419 81106 81106 0.12265452753058526 VGRRPGKMLL 10 Unmodified _VGRRPGKMLL_ 0 0 0 REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF REV__ENST00000540438.5_1_11:113669964-113691034:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2328796386719 3 376.234099 1125.68047 NaN NaN NaN NaN NaN NaN NaN 36.469 1 36.49 35.99 36.99 0.021545 0 0 0 0.96627 1 19323 19323 2.086 0.63089 1 + 69557 17237 46396 47419 81107 81107 0.12265452753058526 VGRRPGPL 8 Unmodified _VGRRPGPL_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.264892578125 2 426.264136 850.51372 0.67065 0.00028587 -0.65804 -0.0002805 0.012613 5.3765E-06 426.2639280740249 17.633 0.21157 15.047 14.925 15.136 -2.5866 62 37 2 0 0 0 0.78849 1 9289 9289 9.3474 0 1 9086200 + 69558 29704 46397 47420 81108 81108 0.08248347919652588 VGRRRIKLL 9 Unmodified _VGRRRIKLL_ 0 0 0 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 ENSG00000170340|ENST00000301998|B3GNT2 MSMS AL20221201_MKP_PDAC_01 4 555.884765625 2 555.882742 1109.75093 NaN NaN NaN NaN NaN NaN NaN 19.047 1 16.425 15.925 16.925 -2.6215 0 0 0 0.85737 1 10063 10063 0.6015 0.076735 1 69559 7973 46398 47421 81109 81109 0.20044494133026092 VGRRRLKHYN 10 Unmodified _VGRRRLKHYN_ 0 0 0 REV__ENST00000514473.2_1_14:22849562-22849673:-|nuORF REV__ENST00000514473.2_1_14:22849562-22849673:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.5919189453125 3 433.589933 1297.74797 0.18903 8.1963E-05 3.7123 0.0016096 3.9014 0.0016916 433.5916546237283 83.042 0.18814 83.042 82.888 83.076 0 11 9 2 0 0 0 0.72482 1 46048 46048 0.13989 0.13989 1 487510 + 69560 28196 46399 47422 81110 81110 0.11100619008220747 VGRRSPELSYQ 11 Unmodified _VGRRSPELSYQ_ 0 0 0 nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B nc|ENSG00000288701|Q5JSZ5|PRRC2B MSMS AL20221201_MKP_PDAC_01 4 646.34033203125 2 646.341301 1290.66805 NaN NaN NaN NaN NaN NaN NaN 100.65 1 94.477 93.977 94.977 -6.1757 0 0 0 0.82644 1 67362 67362 10.8 0 1 69561 16627 46400 47423 81111 81111 0.03434087823711707 VGRSEELEEL 10 Unmodified _VGRSEELEEL_ 0 0 0 REV__nc|ENSG00000070182|P11277-3|SPTB REV__nc|ENSG00000070182|P11277-3|SPTB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5302734375 3 387.531304 1159.57208 -0.74473 -0.00028861 -1.6265 -0.00063033 -2.3712 -0.00091893 387.5307059292077 27.792 0.24446 27.792 27.679 27.924 0 19 11 2 0 0 0 0.69064 1 14332 14332 3.8763 1.1411 1 2565800 + 69562 17465 46401 47424 81112 81112 -0.0013210480703946814 VGRSERHSVL 10 Unmodified _VGRSERHSVL_ 0 0 0 REV__ENST00000261520.8_1_15:60760288-60760423:-|nuORF REV__ENST00000261520.8_1_15:60760288-60760423:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.2154541015625 3 380.547511 1138.6207 1.1292 0.00042971 -2.932 -0.0011157 -1.8028 -0.00068603 380.5462095447958 18.286 0.14642 15.664 15.594 15.74 -2.6215 13 8 2 0 0 0 0.69385 1 9632 9632 3.5871 0 1 1783100 + 69563 24994 46402 47425 81113 81113 0.05693853343382216 VGRSFGKG 8 Unmodified _VGRSFGKG_ 0 0 0 REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2278137207031 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 14.7 1 14.7 14.2 15.2 0 0 0 0 0.97444 1 7012 7012 0.79363 0 1 + 69564 25328 46403 47426 81114 81114 0.028923797573384036 VGRSFGKG 8 Unmodified _VGRSFGKG_ 0 0 0 REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2279357910156 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 15.769 1 15.769 15.269 16.269 0 0 0 0 0.97444 1 7627 7627 0.79363 0 1 + 69565 25328 46403 47426 81115 81115 0.028923797573384036 VGRSFGKG 8 Unmodified _VGRSFGKG_ 0 0 0 REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2272644042969 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 17.248 1 17.248 16.748 17.748 0 0 0 0 0.97444 1 8483 8483 0.79363 0 1 + 69566 25328 46403 47426 81116 81116 0.028923797573384036 VGRSFGKG 8 Unmodified _VGRSFGKG_ 0 0 0 REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF REV__ENST00000302174.8_1_4:88343951-88356162:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2290344238281 2 404.22722 806.439886 NaN NaN NaN NaN NaN NaN NaN 18.068 1 18.074 17.574 18.574 0.0060463 0 0 0 0.97444 1 9141 9141 0.79363 0 1 + 69567 25328 46403 47426 81117 81117 0.028923797573384036 VGRSGKCV 8 Unmodified _VGRSGKCV_ 0 0 0 REV__ENST00000462422.5_1_1:246216281-246670414:-|nuORF REV__ENST00000462422.5_1_1:246216281-246670414:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2201843261719 2 403.22108 804.427607 -0.25763 -0.00010388 -0.63136 -0.00025458 -0.88899 -0.00035846 403.2203133135677 30.187 0.61658 30.217 29.84 30.456 0.030106 71 25 4 0 0 0 0.80975 1 15657 15657 0.79363 0 1 5619000 + 69568 23500 46404 47427 81118 81118 0.017570200226259658 VGRSRVPV 8 Unmodified _VGRSRVPV_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7715454101562 2 435.269419 868.524284 0.53592 0.00023327 -0.093474 -4.0686E-05 0.44245 0.00019258 435.2692739415483 17.435 0.13891 14.848 14.728 14.867 -2.5866 36 20 2 0 0 0 0.76266 1 9067 9067 11.64 0 1 3544600 69569 7096 46405 47428 81119 81119 0.08476330574092117 VGRTHHRW 8 Unmodified _VGRTHHRW_ 0 0 0 ENSG00000136867|ENST00000259392|SLC31A2 ENSG00000136867|ENST00000259392|SLC31A2 ENSG00000136867|ENST00000259392|SLC31A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7815551757812 2 524.781016 1047.54748 NaN NaN NaN NaN NaN NaN NaN 91.496 1 91.496 90.996 91.996 0 0 0 0 0.97444 1 50600 50600 0.79363 0 1 69570 4871 46406 47429 81120 81120 0.025607694114114565 VGRTLPTTY 9 Unmodified _VGRTLPTTY_ 0 0 0 REV__nc|ENSG00000131471|Q16853-2|AOC3 REV__nc|ENSG00000131471|Q16853-2|AOC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2587280273438 2 504.279649 1006.54475 NaN NaN NaN NaN NaN NaN NaN 42.95 1 42.95 42.45 43.45 0 0 0 0 0.7453 1 23292 23292 7.9102 2.1497 1 + 69571 19793 46407 47430 81121 81121 0.041734564432204024 VGRTQQEQPR 10 Unmodified _VGRTQQEQPR_ 0 0 0 ENSG00000188859|ENST00000354422|FAM78B ENSG00000188859|ENST00000354422|FAM78B ENSG00000188859|ENST00000354422|FAM78B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.2141723632812 3 400.214421 1197.62143 NaN NaN NaN NaN NaN NaN NaN 31.427 1 31.427 30.927 31.927 0 0 0 0 0.97592 1 16369 16369 1.5923 0 1 69572 9705 46408 47431 81122 81122 0.030526479923992156 VGRTWTNF 8 Unmodified _VGRTWTNF_ 0 0 0 ENST00000298743.8_1_9:89561621-89561816:-|nuORF ENST00000298743.8_1_9:89561621-89561816:-|nuORF ENST00000298743.8_1_9:89561621-89561816:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.49755859375 1 980.494841 979.487565 0.0014882 1.4591E-06 -1.132 -0.0011099 -1.1305 -0.0011085 980.4936886486737 65.195 0.17514 65.195 65.072 65.247 0 9 6 2 0 0 0 0.80975 1 36350 36350 0.79363 0 1 277900 69573 11537 46409 47432 81123 81123 -0.0029996604248481162 VGRVFVLLLVL 11 Unmodified _VGRVFVLLLVL_ 0 0 0 nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11 nc|ENSG00000158865|Q8WWX8-6|SLC5A11 nc|ENSG00000158865|Q8WWX8-6|SLC5A11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1228.1513671875 1 1227.81874 1226.81146 0.7667 0.00094136 -1.3304 -0.0016334 -0.56367 -0.00069208 1227.8170687766628 68.632 0.10521 62.457 62.365 62.47 -6.1757 6 5 2 0 0 0 0.30598 1 44771 44771 0.35063 0 1 17259000 69574 6616 46410 47433 81124 81124 0.2071316667274914 VGRVGPRA 8 Unmodified _VGRVGPRA_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.2488708496094 2 406.248486 810.48242 0.016418 6.6699E-06 -0.099461 -4.0406E-05 -0.083043 -3.3736E-05 406.2483018942953 76.577 0.56974 76.098 75.909 76.479 -0.47945 88 33 4 0 0 0 0.80975 1 42070 42070 0.79363 0 1 13392000 + 69575 27001 46411 47434 81125 81125 0.06959774885547176 VGRVGPRA 8 Unmodified _VGRVGPRA_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2489318847656 2 406.248486 810.48242 -0.05125 -2.082E-05 -0.82474 -0.00033505 -0.87599 -0.00035587 406.24801455022464 76.095 1.2617 76.142 75.82 77.082 0.047943 146 53 5 0 0 0 0.80975 1 41854 41854 0.79363 0 1 655710000 + 69576 27001 46411 47434 81126 81126 0.06959774885547176 VGRVGPRA 8 Unmodified _VGRVGPRA_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.4902954101562 1 811.489696 810.48242 0.37608 0.00030518 -1.2233 -0.00099267 -0.84719 -0.00068749 811.4884370064788 76.107 0.42544 76.155 75.927 76.352 0.047943 43 17 3 0 0 0 0.80975 2 41902 41902;41934 0.79363 0 1 25126000 + 69577 27001 46411 47434 81127;81128 81127 0.06959774885547176 VGRVGPRA 8 Unmodified _VGRVGPRA_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 811.489696 810.48242 0.37608 0.00030518 -1.2233 -0.00099267 -0.84719 -0.00068749 811.4884370064788 76.107 0.42544 76.155 75.927 76.352 0.047943 0 0 NaN 0.79363 43 17 3 NaN NaN NaN NaN 0 NaN NaN 0 25126000 + 69578 27001 46411 47434 0.06959774885547176 VGRVGPRA 8 Unmodified _VGRVGPRA_ 0 0 0 REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 406.248486 810.48242 -0.05125 -2.082E-05 -0.82474 -0.00033505 -0.87599 -0.00035587 406.24801455022464 76.095 1.2617 76.142 75.82 77.082 0.047943 0.094099 -0.00043478 NaN 0.79363 146 53 5 NaN NaN NaN NaN 0 NaN NaN 0 655710000 + 69579 27001 46411 47434 0.06959774885547176 VGRVQGPQHA 10 Unmodified _VGRVQGPQHA_ 0 0 0 REV__ENST00000465752.1_1_22:24237017-24237290:+|nuORF REV__ENST00000465752.1_1_22:24237017-24237290:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2837524414062 2 524.785964 1047.55738 0.56827 0.00029822 -3.1261 -0.0016406 -2.5579 -0.0013423 525.2853635915654 47.362 0.18507 47.009 46.879 47.064 -0.3526 14 8 2 0 0 0 0.23634 1 25351 25351 6.7232 1.9672 1 3228000 + 69580 27396 46412 47435 81129 81129 0.03549912626135665 VGRWARQVRT 10 Unmodified _VGRWARQVRT_ 0 0 0 REV__ENST00000338573.9_2_16:21312348-21312423:+|nuORF REV__ENST00000338573.9_2_16:21312348-21312423:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.2381591796875 3 410.2389 1227.69487 -0.66935 -0.00027459 -0.91064 -0.00037358 -1.58 -0.00064817 410.2384780613219 14.215 0.032829 14.215 14.2 14.233 0 14 11 2 0 0 0 0.72464 1 6743 6743 0.15932 0 1 416650 + 69581 25674 46413 47436 81130 81130 0.0901324122553433 VGRWARQVRT 10 Unmodified _VGRWARQVRT_ 0 0 0 REV__ENST00000338573.9_2_16:21312348-21312423:+|nuORF REV__ENST00000338573.9_2_16:21312348-21312423:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 410.2389 1227.69487 -0.66935 -0.00027459 -0.91064 -0.00037358 -1.58 -0.00064817 410.2384780613219 14.215 0.032829 14.215 14.2 14.233 0 0 0 NaN 0.15932 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 416650 + 69582 25674 46413 47436 0.0901324122553433 VGRWGGNP 8 Unmodified _VGRWGGNP_ 0 0 0 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 ENSG00000092295|ENST00000206765|TGM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7170104980469 2 421.717019 841.419485 NaN NaN NaN NaN NaN NaN NaN 16.422 1 16.422 15.922 16.922 0 0 0 0 0.97444 1 8005 8005 0.79363 0 1 69583 1613 46414 47437 81131 81131 -0.007567909024828623 VGRWRGSMW 9 Unmodified _VGRWRGSMW_ 0 0 0 ENST00000264080.11_2_19:6730008-6730326:-|nuORF ENST00000264080.11_2_19:6730008-6730326:-|nuORF ENST00000264080.11_2_19:6730008-6730326:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8596801757812 3 378.859032 1133.55527 NaN NaN NaN NaN NaN NaN NaN 15.056 1 15.056 14.556 15.556 0 0 0 0 0.85737 1 7219 7219 0.26902 0 1 69584 11304 46415 47438 81132 81132 -0.006168393833149821 VGRYCNWLI 9 Unmodified _VGRYCNWLI_ 0 0 0 REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF REV__ENST00000321250.12_1_8:29963998-29964085:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2891235351562 2 562.289494 1122.56443 NaN NaN NaN NaN NaN NaN NaN 19.753 1 19.753 19.253 20.253 0 0 0 0 0.84369 1 9902 9902 2.3027 0 1 + 69585 25511 46416 47439 81133 81133 0.00805509182350761 VGRYDQYLA 9 Unmodified _VGRYDQYLA_ 0 0 0 REV__ENST00000590728.1_1_19:5715034-5720009:-|nuORF REV__ENST00000590728.1_1_19:5715034-5720009:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7750854492188 2 542.774731 1083.53491 -0.32574 -0.00017681 -0.21613 -0.00011731 -0.54187 -0.00029411 542.7751374527556 25.719 0.18486 25.719 25.634 25.819 0 12 8 2 0 0 0 0.54444 1 13206 13206 4.756 0 1 1157600 + 69586 29152 46417 47440 81134 81134 -0.0035173156215932977 VGRYENPWTI 10 Unmodified _VGRYENPWTI_ 0 0 0 ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENST00000609154.1_1_20:5988006-5996237:+|nuORF ENST00000609154.1_1_20:5988006-5996237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.5462951660156 3 412.212017 1233.61422 0.25019 0.00010313 0.86403 0.00035616 1.1142 0.00045929 412.54645755623585 31.332 0.24795 31.23 31.109 31.357 -0.10269 25 9 4 0 0 0 0.6606 1 16289 16289 3.8763 0.28927 1 2668200 69587 15876 46418 47441 81135 81135 0.0067591539198019746 VGRYKQHY 8 Unmodified _VGRYKQHY_ 0 0 0 REV__ENSG00000127951|ENST00000248598|FGL2 REV__ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7781982421875 2 525.777608 1049.54066 -0.1677 -8.8175E-05 2.0685 0.0010876 1.9008 0.00099938 525.7789015603197 17.752 0.031542 17.752 17.73 17.761 0 9 6 2 0 0 0 0.80975 1 8770 8770 0.79363 0 1 315160 + 69588 19595 46419 47442 81136 81136 0.01787411740178868 VGRYKQHY 8 Unmodified _VGRYKQHY_ 0 0 0 REV__ENSG00000127951|ENST00000248598|FGL2 REV__ENSG00000127951|ENST00000248598|FGL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7777099609375 2 525.777608 1049.54066 NaN NaN NaN NaN NaN NaN NaN 19.859 1 19.887 19.387 20.387 0.028357 0 0 0 0.97444 1 10034 10034 0.79363 0.19213 1 + 69589 19595 46419 47442 81137 81137 0.01787411740178868 VGRYKTFST 9 Unmodified _VGRYKTFST_ 0 0 0 ENSG00000173285|ENST00000641535|OR10K1 ENSG00000173285|ENST00000641535|OR10K1 ENSG00000173285|ENST00000641535|OR10K1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1914978027344 3 353.525825 1057.55564 NaN NaN NaN NaN NaN NaN NaN 15.508 1 15.514 15.014 16.014 0.0057774 0 0 0 0.84564 1 7732 7732 1.0715 0 1 69590 8313 46420 47443 81138 81138 0.029168588175252808 VGSAAALD 8 Unmodified _VGSAAALD_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1833190917969 2 352.184686 702.354819 NaN NaN NaN NaN NaN NaN NaN 16.332 1 16.332 15.832 16.832 0 0 0 0 0.97444 1 7953 7953 0.79363 0 1 69591 10740 46421 47444 81139 81139 -0.00826410499166741 VGSALPRR 8 Unmodified _VGSALPRR_ 0 0 0 ENSG00000155099|ENST00000285419|PIP4P2;ENST00000520709.5_1_8:92007907-92052988:-|nuORF ENSG00000155099|ENST00000285419|PIP4P2 ENSG00000155099|ENST00000285419|PIP4P2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.261962890625 2 428.261594 854.508634 0.39459 0.00016899 -0.43708 -0.00018718 -0.042484 -1.8194E-05 428.2612594992253 79.165 1.1553 79.22 78.936 80.092 0.054977 149 45 5 0 0 0 0.80992 2 43954 43954;44062 0.69038 0 1 658880000 69592 6370 46422 47445 81140;81141 81140 0.07556044057025701 VGSASARAL 9 Unmodified _VGSASARAL_ 0 0 0 REV__ENST00000505095.1_1_4:166032827-166033957:-|nuORF REV__ENST00000505095.1_1_4:166032827-166033957:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 416.2362365722656 2 416.237784 830.461016 NaN NaN NaN NaN NaN NaN NaN 47.016 1 41.935 41.435 42.435 -5.0805 0 0 0 0.23581 1 29133 29133 28.487 1.6032 1 + 69593 28065 46423 47446 81142 81142 0.03900345066176669 VGSASHGGRRS 11 Unmodified _VGSASHGGRRS_ 0 0 0 ENST00000527638.1_1_11:1312411-1330818:-|nuORF;ENST00000532551.1_1_11:1316748-1330818:-|nuORF ENST00000527638.1_1_11:1312411-1330818:-|nuORF ENST00000527638.1_1_11:1312411-1330818:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2717895507812 2 535.776128 1069.5377 -0.31038 -0.00016629 -2.1289 -0.0011406 -2.4393 -0.0013069 535.7749963919808 41.353 0.24824 41.353 41.137 41.385 0 17 11 2 0 0 0 0.28226 1 22253 22253 17.113 11.882 1 11770000 69594 14838 46424 47447 81143 81143 0.005715366153708601 VGSATTLF 8 Unmodified _VGSATTLF_ 0 0 0 REV__nc|ENSG00000136193|Q12765-3|SCRN1 REV__nc|ENSG00000136193|Q12765-3|SCRN1 MSMS AL20221201_MKP_PDAC_01 4 398.2192687988281 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 16.706 1 14.149 13.649 14.649 -2.557 0 0 0 0.97348 1 8673 8673 5.7604 2.8712 1 + 69595 20145 46425 47448 81144 81144 0.011987355690507684 VGSAVGGTSYQ 11 Unmodified _VGSAVGGTSYQ_ 0 0 0 nc|ENSG00000240268|A6NHM9|MOXD2P nc|ENSG00000240268|A6NHM9|MOXD2P nc|ENSG00000240268|A6NHM9|MOXD2P MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2867431640625 2 513.248546 1024.48254 0.26097 0.00013394 3.3566 0.0017228 3.6175 0.0018567 513.2482457539077 70.776 0.16571 70.298 70.202 70.368 -0.47736 11 7 2 0 0 0 0.26754 1 38752 38752 24.021 10.115 1 483030 69596 16568 46426 47449 81145 81145 -0.02872314695764544 VGSAWDVVVP 10 Unmodified _VGSAWDVVVP_ 0 0 0 REV__ENSG00000172575|ENST00000310803|RASGRP1 REV__ENSG00000172575|ENST00000310803|RASGRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7747192382812 2 514.7742 1027.53385 1.096 0.00056421 0.47806 0.00024609 1.5741 0.00081031 514.7744528216062 20.778 0.30318 18.085 17.941 18.244 -2.693 29 19 2 0 0 0 0.63399 1 11064 11064 9.3831 0.035688 1 2838900 + 69597 22662 46427 47450 81146 81146 0.021180540689329064 VGSAWRPD 8 Unmodified _VGSAWRPD_ 0 0 0 REV__nc|ENSG858|P60608|ERVFC1-1 REV__nc|ENSG858|P60608|ERVFC1-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2234497070312 2 444.222134 886.429715 1.6339 0.00072583 0.61081 0.00027133 2.2447 0.00099717 444.2223638544905 50.026 0.40496 49.977 49.805 50.21 -0.048828 52 19 4 0 0 0 0.80676 1 26951 26951 2.5775 0 1 15748000 + 69598 30046 46428 47451 81147 81147 -0.01804227967920724 VGSCEITNWL 10 Unmodified _VGSCEITNWL_ 0 0 0 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 ENSG00000176092|ENST00000308182|CRYBG2 MSMS AL20221201_MKP_PDAC_01 4 561.3173217773438 2 561.268424 1120.5223 NaN NaN NaN NaN NaN NaN NaN 101.48 1 95.309 94.809 95.809 -6.1757 0 0 0 0.64375 1 68093 68093 19.257 0 1 69599 8564 46429 47452 81148 81148 -0.033145110167197345 VGSCLTLWDR 10 Unmodified _VGSCLTLWDR_ 0 0 0 REV__ENST00000359707.8_1_4:76598633-76598708:-|nuORF REV__ENST00000359707.8_1_4:76598633-76598708:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8620300292969 3 383.862219 1148.56483 NaN NaN NaN NaN NaN NaN NaN 15.788 1 15.788 15.288 16.288 0 0 0 0 1.0019 1 7638 7638 0.15932 0 1 + 69600 25897 46430 47453 81149 81149 -0.0035111588849758846 VGSCWGLRCL 10 Unmodified _VGSCWGLRCL_ 0 0 0 REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF REV__ENST00000508913.5_1_5:43043449-43044931:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.51416015625 3 365.180895 1092.52086 -0.46968 -0.00017152 -2.1499 -0.0007851 -2.6196 -0.00095662 365.1803084094397 19.534 0.16439 19.534 19.452 19.616 0 34 24 2 0 0 0 0.71123 1 9761 9761 0.69767 0 1 601520 + 69601 28123 46431 47454 81150 81150 -0.021704235864262955 VGSDCTTI 8 Unmodified _VGSDCTTI_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53 ENSG00000141510|ENST00000269305|TP53 ENSG00000141510|ENST00000269305|TP53 MSMS AL20221201_MKP_PDAC_01 4 398.22998046875 2 398.181286 794.348019 NaN NaN NaN NaN NaN NaN NaN 17.361 1 14.775 14.275 15.275 -2.5866 0 0 0 0.97444 1 9070 9070 2.8892 0 1 69602 5341 46432 47455 81151 81151 -0.05738091442026416 VGSDCTTI 8 Unmodified _VGSDCTTI_ 0 0 0 ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;nc|ENSG00000141510|P04637-3|TP53;TP53|p.R342Efs*3|1|0.53|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;nc|ENSG00000141510|P04637-6|TP53;TP53|p.G302Rfs*4|1|0.16|ENSG00000141510|chr17:7673717-7673718|-/G|frameshift_variant;TP53|p.E294Afs*11|1|0.04|ENSG00000141510|chr17:7673740-7673741|CC/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.S269Ifs*2|1|0.24|ENSG00000141510|chr17:7673813-7673814|GC/-|frameshift_variant;TP53|p.C242Afs*5|1|0.13|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-9|TP53;nc|ENSG00000141510|P04637-8|TP53 ENSG00000141510|ENST00000269305|TP53 ENSG00000141510|ENST00000269305|TP53 MSMS AL20221201_MKP_PDAC_01 4 397.8936767578125 2 398.181286 794.348019 NaN NaN NaN NaN NaN NaN NaN 17.858 1 15.271 14.771 15.771 -2.5866 0 0 0 0.97444 1 9372 9372 2.8892 0 1 69603 5341 46432 47455 81152 81152 -0.05738091442026416 VGSDFKVVHL 10 Unmodified _VGSDFKVVHL_ 0 0 0 ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF ENST00000331768.9_1_14:99864104-99864326:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1936340332031 3 367.541475 1099.60259 -0.54026 -0.00019857 0.39162 0.00014394 -0.14864 -5.463E-05 367.541608490571 18.021 0.1742 18.021 17.939 18.113 0 61 22 3 0 0 0 0.70951 1 8884 8884 0.77653 0.078866 1 9071600 69604 11864 46433 47456 81153 81153 0.05677718368656315 VGSDGESL 8 Unmodified _VGSDGESL_ 0 0 0 REV__ENSG00000187764|ENST00000422704|SEMA4D REV__ENSG00000187764|ENST00000422704|SEMA4D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.231689453125 2 382.177058 762.339563 NaN NaN NaN NaN NaN NaN NaN 18.965 1 18.971 18.471 19.471 0.0060463 0 0 0 0.97444 1 9631 9631 2.8892 0 1 + 69605 23658 46434 47457 81154 81154 -0.05111322086986547 VGSDKYAARFG 11 Unmodified _VGSDKYAARFG_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.8677062988281 3 390.86825 1169.58292 -0.51587 -0.00020164 0.041018 1.6032E-05 -0.47485 -0.0001856 390.8681366217894 19.397 0.12113 19.397 19.313 19.434 0 12 7 2 0 0 0 0.71036 1 9705 9705 1.3296 0 1 785280 69606 3099 46435 47458 81155 81155 0.004913423578727816 VGSDRGFLAL 10 Unmodified _VGSDRGFLAL_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7847900390625 2 517.785099 1033.55564 0.072084 3.7324E-05 -0.50379 -0.00026085 -0.4317 -0.00022353 517.7851058489001 54.27 0.21856 54.203 54.062 54.28 -0.066936 16 10 2 0 0 0 0.52097 1 29491 29491 15.248 1.3424 1 1528500 69607 9593 46436 47459 81156 81156 0.040208588175119075 VGSDSCTT 8 Unmodified _VGSDSCTT_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 385.154052734375 2 385.155268 768.295984 NaN NaN NaN NaN NaN NaN NaN 9.0718 1 6.5899 6.0899 7.0899 -2.482 0 0 0 0.97444 1 4576 4576 0.69038 0 1 69608 6400 46437 47460 81157 81157 -0.09743254855789019 VGSDSCTT 8 Unmodified _VGSDSCTT_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 385.154296875 2 385.155268 768.295984 NaN NaN NaN NaN NaN NaN NaN 12.51 1 10.028 9.5282 10.528 -2.482 0 0 0 0.97444 1 6330 6330 0.69038 0 1 69609 6400 46437 47460 81158 81158 -0.09743254855789019 VGSDTVNEF 9 Unmodified _VGSDTVNEF_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7232971191406 2 484.221997 966.429441 -0.29379 -0.00014226 -0.050193 -2.4304E-05 -0.34399 -0.00016657 484.2221700654669 18.942 0.43439 18.942 18.75 19.185 0 41 33 2 0 0 0 0.37804 1 9558 9558 13.508 0 1 977500 69610 4157 46438 47461 81159 81159 -0.05511692478432906 VGSEDYFYH 9 Unmodified _VGSEDYFYH_ 0 0 0 REV__ENSG00000197136|ENST00000355703|PCNX3 REV__ENSG00000197136|ENST00000355703|PCNX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.7359619140625 2 558.735271 1115.45599 NaN NaN NaN NaN NaN NaN NaN 15.03 1 15.03 14.53 15.53 0 0 0 0 0.85737 1 7204 7204 0.6015 0 1 + 69611 23899 46439 47462 81160 81160 -0.09712003587105755 VGSEEEHGI 9 Unmodified _VGSEEEHGI_ 0 0 0 REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF REV__ENST00000542587.5_3_19:19738915-19739703:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7195434570312 2 478.719621 955.42469 0.50666 0.00024255 0.52421 0.00025095 1.0309 0.0004935 478.7200479862529 27.957 0.38378 24.809 24.639 25.022 -3.1482 48 20 3 0 0 0 0.078417 1 15480 15480 38.151 7.9264 1 16416000 + 69612 28621 46440 47463 81161 81161 -0.054805766211757145 VGSEFVQKY 9 Unmodified _VGSEFVQKY_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MSMS AL20221201_MKP_PDAC_01 4 528.7716064453125 2 528.771657 1055.52876 NaN NaN NaN NaN NaN NaN NaN 39.33 1 34.88 34.38 35.38 -4.4509 0 0 0 0.091025 1 23331 23331 45.7 5.7423 1 69613 468 46441 47464 81162 81162 0.003217502063534994 VGSEPRAPKL 10 Unmodified _VGSEPRAPKL_ 0 0 0 ENSG00000143416|ENST00000368868|SELENBP1;nc|ENSG00000143416|Q13228-4|SELENBP1;ENST00000492643.5_1_1:151339689-151341653:-|nuORF;ENST00000455839.5_1_1:151339298-151341653:-|nuORF;ENST00000474352.5_1_1:151338696-151341653:-|nuORF;nc|ENSG00000143416|Q13228-2|SELENBP1 ENSG00000143416|ENST00000368868|SELENBP1 ENSG00000143416|ENST00000368868|SELENBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.87353515625 3 351.873224 1052.59784 -0.47375 -0.0001667 0.57591 0.00020265 0.10216 3.5948E-05 351.8734057818778 18.985 0.26827 18.985 18.879 19.147 0 70 21 4 0 0 0 0.69377 1 9549 9549 1.7423 0 1 7205900 69614 5509 46442 47465 81163 81163 0.07364834225904815 VGSETFLDFI 10 Unmodified _VGSETFLDFI_ 0 0 0 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.258056640625 2 564.284597 1126.55464 0.80027 0.00045158 2.936 0.0016567 3.7363 0.0021083 564.7893027508604 67.705 0.26208 61.529 61.339 61.601 -6.1757 18 14 2 0 0 0 0.19561 1 44048 44048 24.021 16.731 1 11447000 + 69615 22272 46443 47466 81164 81164 -0.003574003420453664 VGSEWSVW 8 Unmodified _VGSEWSVW_ 0 0 0 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 REV__nc|ENSG00000121671|Q49AN0-2|CRY2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2240600585938 2 475.224342 948.434132 NaN NaN NaN NaN NaN NaN NaN 15.266 1 15.266 14.766 15.766 0 0 0 0 0.97444 1 7338 7338 0.79363 0 1 + 69616 19302 46444 47467 81165 81165 -0.04214763545007827 VGSEYADF 8 Unmodified _VGSEYADF_ 0 0 0 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 ENSG00000102543|ENST00000251108|CDADC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.1936950683594 2 444.192708 886.370863 0.49986 0.00022203 0.43335 0.00019249 0.93321 0.00041453 444.19290030417716 58.002 0.36165 58.002 57.845 58.206 0 18 14 2 0 0 0 0.80624 1 32297 32297 2.8892 0 1 1400100 69617 2051 46445 47468 81166 81166 -0.0768674905291391 VGSFFNLLQF 10 Unmodified _VGSFFNLLQF_ 0 0 0 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.814697265625 2 586.310949 1170.60735 2.3792 0.0013949 1.3661 0.00080094 3.7452 0.0021959 586.3125114891386 95.3 0.53792 95.304 94.972 95.51 0.004158 24 19 2 0 0 0 0.23981 1 52945 52945 1.8442 0 1 907540 + 69618 22467 46446 47469 81167 81167 0.02886602511421188 VGSFGRTF 8 Unmodified _VGSFGRTF_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7268981933594 2 435.727052 869.439552 -0.18109 -7.8904E-05 -0.6507 -0.00028353 -0.83179 -0.00036243 435.7269351839323 22.17 0.19629 22.193 22.097 22.294 0.022896 12 8 2 0 0 0 0.80044 1 11276 11276 6.3541 0 1 620550 + 69619 29763 46447 47470 81168 81168 -0.00039039962541664863 VGSFGRTF 8 Unmodified _VGSFGRTF_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.727052 869.439552 -0.18109 -7.8904E-05 -0.6507 -0.00028353 -0.83179 -0.00036243 435.7269351839323 22.17 0.19629 22.193 22.097 22.294 0.022896 -0.047337 -0.00045038 NaN 6.3541 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 620550 + 69620 29763 46447 47470 -0.00039039962541664863 VGSFNQVHTL 10 Unmodified _VGSFNQVHTL_ 0 0 0 REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4982299804688 3 367.861096 1100.56146 -0.55135 -0.00020282 -0.031141 -1.1456E-05 -0.58249 -0.00021427 367.86118775074044 34.918 0.15191 34.918 34.846 34.998 0 11 7 2 0 0 0 0.23896 1 18463 18463 1.7423 0.28716 1 1777700 + 69621 27382 46448 47471 81169 81169 0.015199573291965862 VGSFNQVHTL 10 Unmodified _VGSFNQVHTL_ 0 0 0 REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 367.861096 1100.56146 -0.34287 -0.00012613 0.72674 0.00026734 0.38388 0.00014121 367.86131273376924 35.036 0.18354 34.814 34.711 34.895 -0.2224 -0.052279 0.0004069 NaN 1.7423 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 826120 + 69622 27382 46448 47471 0.015199573291965862 VGSFSGSF 8 Unmodified _VGSFSGSF_ 0 0 0 REV__ENST00000361756.7_1_11:71708133-71708226:+|nuORF REV__ENST00000361756.7_1_11:71708133-71708226:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 394.1866455078125 2 394.184686 786.354819 NaN NaN NaN NaN NaN NaN NaN 16.294 1 13.737 13.237 14.237 -2.557 0 0 0 0.97444 1 8432 8432 2.8892 0 1 + 69623 25936 46449 47472 81170 81170 -0.046904104991313034 VGSGGTRW 8 Unmodified _VGSGGTRW_ 0 0 0 ENST00000504102.5_1_17:47755419-47755581:-|nuORF ENST00000504102.5_1_17:47755419-47755581:-|nuORF ENST00000504102.5_1_17:47755419-47755581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2100830078125 2 410.209027 818.403501 NaN NaN NaN NaN NaN NaN NaN 18.528 1 18.551 18.051 19.051 0.023106 0 0 0 0.97444 1 9296 9296 0.79363 0 1 69624 14485 46450 47473 81171 81171 -0.012964971394012537 VGSGKLRR 8 Unmodified _VGSGKLRR_ 0 0 0 REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7747192382812 2 436.774868 871.535184 0.97113 0.00042416 -0.79515 -0.0003473 0.17598 7.6863E-05 436.7744278921096 79.658 0.38643 79.169 78.968 79.354 -0.48932 40 17 3 0 0 0 0.80975 1 43691 43691 0.79363 0 1 3610000 + 69625 17505 46451 47474 81172 81172 0.0942773294835888 VGSGKLRR 8 Unmodified _VGSGKLRR_ 0 0 0 REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 872.5433959960938 1 872.54246 871.535184 0.56872 0.00049623 -0.40481 -0.00035321 0.16391 0.00014302 872.5417770038525 79.142 0.33515 79.197 79.056 79.391 0.05497 21 12 2 0 0 0 0.80975 2 43691 43691;43798 0.79363 0 1 9441800 + 69626 17505 46451 47474 81173;81174 81173 0.0942773294835888 VGSGKLRR 8 Unmodified _VGSGKLRR_ 0 0 0 REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF REV__ENST00000554493.1_1_14:68129224-68156947:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 872.54246 871.535184 0.56872 0.00049623 -0.40481 -0.00035321 0.16391 0.00014302 872.5417770038525 79.142 0.33515 79.197 79.056 79.391 0.05497 0 0 NaN 0.79363 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 9441800 + 69627 17505 46451 47474 0.0942773294835888 VGSGLGTPL 9 Unmodified _VGSGLGTPL_ 0 0 0 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8771057128906 2 400.729261 799.443968 -0.16347 -6.5507E-05 2.2923 0.00091861 2.1289 0.0008531 400.73021920577554 35.031 0.28723 35.059 34.856 35.143 0.027405 16 12 2 0 0 0 0.21367 1 18531 18531 2.0598 1.2661 1 971780 69628 3761 46452 47475 81175 81175 0.03622424460365892 VGSGRPAGLAA 11 Unmodified _VGSGRPAGLAA_ 0 0 0 ENST00000455178.1_1_20:33864076-33865848:-|nuORF;ENST00000566203.6_1_20:33859916-33865902:-|nuORF ENST00000455178.1_1_20:33864076-33865848:-|nuORF ENST00000455178.1_1_20:33864076-33865848:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2698669433594 2 478.269616 954.524678 NaN NaN NaN NaN NaN NaN NaN 92.649 1 92.191 91.691 92.691 -0.4574 0 0 0 0.9435 1 50636 50636 0 0 1 69629 13577 46453 47476 81176 81176 0.04559705503254463 VGSGVIYLL 9 Unmodified _VGSGVIYLL_ 0 0 0 REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.7764282226562 2 460.776211 919.537869 0.69604 0.00032072 0.1199 5.5246E-05 0.81594 0.00037597 460.776209452765 50.08 0.63885 49.688 49.353 49.992 -0.3923 81 31 3 0 0 0 0.052168 2 26930 26930;27036 44.407 0.63463 1 89819000 + 69630 25309 46454 47477 81177;81178 81177 0.0748814356264802 VGSGVIYLL 9 Unmodified _VGSGVIYLL_ 0 0 0 REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.7763671875 2 460.776211 919.537869 1.1212 0.00051662 -0.29504 -0.00013595 0.82616 0.00038067 460.7759911022053 49.705 0.53503 49.657 49.392 49.927 -0.048824 68 26 3 0 0 0 0.03327 1 26878 26878 53.576 1.9458 1 25121000 + 69631 25309 46454 47477 81179 81179 0.0748814356264802 VGSGVIYLL 9 Unmodified _VGSGVIYLL_ 0 0 0 REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF REV__ENST00000300584.7_1_15:78290103-78290292:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 460.776211 919.537869 0.69604 0.00032072 0.1199 5.5246E-05 0.81594 0.00037597 460.776209452765 50.08 0.63885 49.688 49.353 49.992 -0.3923 -0.023193 0.00024655 NaN 53.576 81 31 3 NaN NaN NaN NaN 0 NaN NaN 0 89819000 + 69632 25309 46454 47477 0.0748814356264802 VGSGVLSH 8 Unmodified _VGSGVLSH_ 0 0 0 REV__ENST00000381007.8_1_5:65016646-65017931:-|nuORF REV__ENST00000381007.8_1_5:65016646-65017931:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.204345703125 2 378.205953 754.397353 NaN NaN NaN NaN NaN NaN NaN 15.441 1 15.441 14.941 15.941 0 0 0 0 0.97444 1 7438 7438 0.79363 0 1 + 69633 26324 46455 47478 81180 81180 0.01032984629080147 VGSHCRGRGGD 11 Unmodified _VGSHCRGRGGD_ 0 0 0 nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-7|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 nc|ENSG00000166348|Q70EL1-6|USP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5053405761719 3 367.505318 1099.49412 NaN NaN NaN NaN NaN NaN NaN 14.403 1 14.403 13.903 14.903 0 0 0 0 0.9435 1 6843 6843 0 0 1 69634 7477 46456 47479 81181 81181 -0.05164396153395501 VGSHSSSLAL 10 Unmodified _VGSHSSSLAL_ 0 0 0 REV__ENST00000481757.5_1_2:241513732-241514263:+|nuORF REV__ENST00000481757.5_1_2:241513732-241514263:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2541198730469 2 479.253631 956.49271 -0.20927 -0.00010029 0.28617 0.00013715 0.0769 3.6854E-05 479.254148597874 56.262 0.49539 56.193 55.924 56.419 -0.068741 72 25 4 0 0 0 0.42068 1 30626 30626 20.454 2.3073 1 15489000 + 69635 27700 46457 47480 81182 81182 0.012722930294785328 VGSHSYPA 8 Unmodified _VGSHSYPA_ 0 0 0 ENST00000445946.3_1_10:89621264-89621402:-|nuORF ENST00000445946.3_1_10:89621264-89621402:-|nuORF ENST00000445946.3_1_10:89621264-89621402:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.1949768066406 2 409.195585 816.376617 NaN NaN NaN NaN NaN NaN NaN 18.232 1 18.232 17.732 18.732 0 0 0 0 0.97444 1 9048 9048 0.79363 0 1 69636 13461 46458 47481 81183 81183 -0.03891605750584404 VGSIRFTPG 9 Unmodified _VGSIRFTPG_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.26171875 2 467.261259 932.507966 1.3034 0.00060902 0.48435 0.00022632 1.7877 0.00083534 467.2613308184614 33.777 0.46773 29.792 29.555 30.022 -3.9853 77 25 4 0 0 0 0.06294 1 19315 19315 41.84 9.5341 1 22150000 + 69637 21196 46459 47482 81184 81184 0.039012046173297676 VGSKAPLG 8 Unmodified _VGSKAPLG_ 0 0 0 REV__nc|ENSG00000115419|O94925-3|GLS REV__nc|ENSG00000115419|O94925-3|GLS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 364.2099304199219 2 364.718696 727.422839 1.9475 0.00071027 3.2175 0.0011735 5.165 0.0018838 364.720118479456 41.566 0.2625 36.958 36.923 37.186 -4.6079 22 16 2 0 0 0 8.7369 1 25022 25022 11.64 0 1 3321800 + 69638 18979 46460 47483 81185 81185 0.04822459151523617 VGSKAPLG 8 Unmodified _VGSKAPLG_ 0 0 0 REV__nc|ENSG00000115419|O94925-3|GLS REV__nc|ENSG00000115419|O94925-3|GLS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 364.718696 727.422839 0.42634 0.00015549 4.9024 0.001788 5.3288 0.0019435 364.7202968887276 36.794 0.26682 36.794 36.67 36.936 0 0.025198 0.00051052 NaN 16.942 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1904300 + 69639 18979 46460 47483 0.04822459151523617 VGSKAPLG 8 Unmodified _VGSKAPLG_ 0 0 0 REV__nc|ENSG00000115419|O94925-3|GLS REV__nc|ENSG00000115419|O94925-3|GLS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 364.718696 727.422839 -0.30569 -0.00011149 3.9307 0.0014336 3.6251 0.0013221 364.72010327096507 36.532 0.37434 36.554 36.393 36.767 0.021545 -0.21483 -0.00019825 NaN 16.942 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 15760000 + 69640 18979 46460 47483 0.04822459151523617 VGSLEYDPRI 10 Unmodified _VGSLEYDPRI_ 0 0 0 ENSG00000134640|ENST00000257068|MTNR1B ENSG00000134640|ENST00000257068|MTNR1B ENSG00000134640|ENST00000257068|MTNR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5354614257812 3 383.536389 1147.58734 -0.33432 -0.00012823 -1.1278 -0.00043254 -1.4621 -0.00056077 383.53591960577006 23.275 0.18368 23.275 23.163 23.347 0 16 8 2 0 0 0 0.70734 1 11856 11856 2.086 0 1 648820 69641 4626 46461 47484 81186 81186 0.019448067808070846 VGSLFAHI 8 Unmodified _VGSLFAHI_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.23974609375 2 422.239796 842.465038 NaN NaN NaN NaN NaN NaN NaN 23.773 1 23.794 23.294 24.294 0.021185 0 0 0 0.97444 1 12251 12251 0.79363 0 1 + 69642 24353 46462 47485 81187 81187 0.03750434559879068 VGSLGCDL 8 Unmodified _VGSLGCDL_ 0 0 0 ENSG00000177047|ENST00000380229|IFNW1 ENSG00000177047|ENST00000380229|IFNW1 ENSG00000177047|ENST00000380229|IFNW1 MSMS AL20221201_MKP_PDAC_01 4 382.1858215332031 2 382.186371 762.35819 NaN NaN NaN NaN NaN NaN NaN 15.717 1 13.19 12.69 13.69 -2.5273 0 0 0 0.97444 1 8089 8089 2.8892 0 1 69643 8650 46463 47486 81188 81188 -0.032494837167973856 VGSLIVKVS 9 Unmodified _VGSLIVKVS_ 0 0 0 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.2898559570312 2 451.289485 900.564418 0.30143 0.00013603 -0.19692 -8.8867E-05 0.10451 4.7165E-05 451.289322806207 52.807 0.17688 52.355 52.261 52.438 -0.45173 14 8 2 0 0 0 0.36964 1 28574 28574 13.906 3.8321 1 1117200 69644 8710 46464 47487 81189 81189 0.11015832453995245 VGSLIVKVS 9 Unmodified _VGSLIVKVS_ 0 0 0 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 ENSG00000177839|ENST00000316105|PCDHB9 MSMS AL20221201_MKP_PDAC_01 4 451.2906188964844 2 451.289485 900.564418 NaN NaN NaN NaN NaN NaN NaN 58.434 1 52.36 51.86 52.86 -6.0745 0 0 0 0.41346 1 37439 37439 19.257 3.1079 1 69645 8710 46464 47487 81190 81190 0.11015832453995245 VGSLKLQT 8 Unmodified _VGSLKLQT_ 0 0 0 ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB ENSG00000186260|ENST00000571589|MRTFB ENSG00000186260|ENST00000571589|MRTFB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.2576599121094 2 423.258185 844.501818 NaN NaN NaN NaN NaN NaN NaN 18.514 1 18.514 18.014 19.014 0 0 0 0 0.92941 1 9210 9210 14.838 0 1 69646 9464 46465 47488 81191 81191 0.07334686385797795 VGSLLERQDF 10 Unmodified _VGSLLERQDF_ 0 0 0 ENSG00000145911|ENST00000274605|N4BP3 ENSG00000145911|ENST00000274605|N4BP3 ENSG00000145911|ENST00000274605|N4BP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.345947265625 2 582.306395 1162.59824 0.50985 0.00029689 -1.2082 -0.00070352 -0.69832 -0.00040664 582.3048874031837 62.058 0.19028 61.571 61.448 61.638 -0.48764 13 8 2 0 0 0 0.22149 1 33841 33841 20.454 2.3073 1 1204800 69647 5739 46466 47489 81192 81192 0.023442091550805344 VGSLRRRL 8 Unmodified _VGSLRRRL_ 0 0 0 REV__ENST00000234296.6_1_2:201822845-201828374:-|nuORF REV__ENST00000234296.6_1_2:201822845-201828374:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.8109741210938 2 478.809242 955.603932 NaN NaN NaN NaN NaN NaN NaN 31.66 1 31.531 31.031 32.031 -0.12915 0 0 0 0.97444 1 16468 16468 0.79363 0 1 + 69648 24825 46467 47490 81193 81193 0.12435397248077606 VGSLSWNSYIL 11 Unmodified _VGSLSWNSYIL_ 0 0 0 ENST00000488829.1_1_9:89626569-89628063:+|nuORF;ENSG00000117399|ENST00000310955|CDC20 ENST00000488829.1_1_9:89626569-89628063:+|nuORF ENST00000488829.1_1_9:89626569-89628063:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8854675292969 3 413.552039 1237.63429 NaN NaN NaN NaN NaN NaN NaN 20.315 1 20.315 19.815 20.815 0 0 0 0 0.94144 1 10215 10215 0.50596 0 1 69649 3299 46468 47491 81194 81194 0.024976663319421277 VGSLYFKWE 9 Unmodified _VGSLYFKWE_ 0 0 0 REV__ENSG00000165164|ENST00000378653|CFAP47 REV__ENSG00000165164|ENST00000378653|CFAP47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7894897460938 2 564.78985 1127.56515 NaN NaN NaN NaN NaN NaN NaN 14.126 1 14.133 13.633 14.633 0.0073986 0 0 0 0.85737 1 6991 6991 0.6015 0 1 + 69650 21988 46469 47492 81195 81195 0.006466271030376447 VGSNAQAY 8 Unmodified _VGSNAQAY_ 0 0 0 nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 nc|ENSG00000100207|Q9UGU0-2|TCF20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1929626464844 2 405.193042 808.371532 NaN NaN NaN NaN NaN NaN NaN 15.059 1 15.045 14.545 15.545 -0.014067 0 0 0 0.97444 1 7370 7370 0.79363 0 1 69651 1768 46470 47493 81196 81196 -0.04031909613206608 VGSNDLTK 8 Unmodified _VGSNDLTK_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.2213745117188 2 417.2218 832.429047 NaN NaN NaN NaN NaN NaN NaN 17.304 1 17.318 16.818 17.818 0.013865 0 0 0 0.97444 1 8593 8593 0.79363 0 1 69652 7491 46471 47494 81197 81197 0.006129325923666329 VGSNGLQKYTI 11 Unmodified _VGSNGLQKYTI_ 0 0 0 ENSG00000081818|ENST00000194152|PCDHB4 ENSG00000081818|ENST00000194152|PCDHB4 ENSG00000081818|ENST00000194152|PCDHB4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3192749023438 2 590.322045 1178.62954 NaN NaN NaN NaN NaN NaN NaN 72.912 1 72.954 72.454 73.454 0.041725 0 0 0 0.93933 1 40160 40160 2.9952 0.69251 1 69653 1332 46472 47495 81198 81198 0.04736782189183941 VGSNKYGIFL 10 Unmodified _VGSNKYGIFL_ 0 0 0 nc|ENSG00000172733|Q9UJV8-2|PURG;ENSG00000172733|ENST00000523392|PURG nc|ENSG00000172733|Q9UJV8-2|PURG nc|ENSG00000172733|Q9UJV8-2|PURG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.30322265625 2 549.303124 1096.5917 0.39633 0.0002177 1.5972 0.00087736 1.9936 0.0010951 549.3033087774907 78.564 0.35793 78.616 78.419 78.777 0.052444 32 14 3 0 0 0 0.42143 1 43389 43389 20.415 0 1 6900600 69654 8248 46473 47496 81199 81199 0.04726315994366814 VGSPLGSAIA 10 Unmodified _VGSPLGSAIA_ 0 0 0 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 ENSG00000166716|ENST00000560079|ZNF592 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 435.7624206542969 2 436.247818 870.481082 0.97964 0.00042737 0.068545 2.9903E-05 1.0482 0.00045727 436.2478329711918 30.3 0.43896 26.804 26.553 26.992 -3.497 41 21 3 0 0 0 0.1502 1 17013 17013 32.305 0 1 36433000 69655 7523 46474 47497 81200 81200 0.04066096006124553 VGSPRDRKPC 10 Unmodified _VGSPRDRKPC_ 0 0 0 nc|ENSG00000100422|Q8TCT0-2|CERK;ENSG00000100422|ENST00000216264|CERK nc|ENSG00000100422|Q8TCT0-2|CERK nc|ENSG00000100422|Q8TCT0-2|CERK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7938842773438 2 557.792932 1113.57131 0.85541 0.00047714 -0.48518 -0.00027063 0.37023 0.00020651 557.7924636036122 49.421 0.37869 49.029 48.82 49.198 -0.3923 59 18 4 0 0 0 0.52888 1 26514 26514 14.838 0.93222 1 32893000 69656 1823 46475 47498 81201 81201 0.019068220629151256 VGSQAEVIEKR 11 Unmodified _VGSQAEVIEKR_ 0 0 0 REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43 REV__nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.89404296875 3 405.894577 1214.6619 -0.4201 -0.00017052 0.68437 0.00027778 0.26427 0.00010727 406.2291266937384 22.082 0.092712 22.082 22.05 22.143 0 6 4 2 0 0 0 0.74096 1 11230 11230 0.40827 0.13925 1 370830 + 69657 23956 46476 47499 81202 81202 0.06315569592175052 VGSQWPRE 8 Unmodified _VGSQWPRE_ 0 0 0 ENST00000535516.5_1_13:111298710-111298890:-|nuORF ENST00000535516.5_1_13:111298710-111298890:-|nuORF ENST00000535516.5_1_13:111298710-111298890:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7392883300781 2 479.740691 957.466829 NaN NaN NaN NaN NaN NaN NaN 32.717 1 32.588 32.088 33.088 -0.12915 0 0 0 0.97444 1 17046 17046 4.3292 1.44 1 69658 14971 46477 47500 81203 81203 -0.013605564221506938 VGSRELLGPH 10 Unmodified _VGSRELLGPH_ 0 0 0 REV__ENST00000568983.5_1_16:89811164-89816202:-|nuORF REV__ENST00000568983.5_1_16:89811164-89816202:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7966918945312 2 532.795998 1063.57744 0.26574 0.00014159 0.21507 0.00011459 0.48081 0.00025617 532.7961538030805 27.55 0.17366 27.578 27.488 27.661 0.028664 12 7 2 0 0 0 0.65502 1 14305 14305 7.9102 2.1783 1 3804400 + 69659 28956 46478 47501 81204 81204 0.04819663566104282 VGSRNSPPEHL 11 Unmodified _VGSRNSPPEHL_ 0 0 0 nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B nc|ENSG00000089177|Q96L93-2|KIF16B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2061462402344 3 398.207155 1191.59963 NaN NaN NaN NaN NaN NaN NaN 17.771 1 17.771 17.271 18.271 0 0 0 0 0.94184 1 8784 8784 1.2148 0.4383 1 69660 16070 46479 47502 81205 81205 0.011498432438656891 VGSRPSPGF 9 Unmodified _VGSRPSPGF_ 0 0 0 ENST00000461347.5_1_2:232347984-232348125:-|nuORF ENST00000461347.5_1_2:232347984-232348125:-|nuORF ENST00000461347.5_1_2:232347984-232348125:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.23876953125 2 452.237784 902.461016 0.95403 0.00043145 1.2362 0.00055906 2.1902 0.0009905 452.23839254277965 52.328 1.0573 52.269 51.611 52.669 -0.058918 82 51 2 0 0 0 0.55144 1 28173 28173 4.3292 1.7518 1 2291400 69661 13658 46480 47503 81206 81206 0.005883450661940515 VGSRRPGG 8 Unmodified _VGSRRPGG_ 0 0 0 nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF nc|ENSG00000196235|O00267-2|SUPT5H nc|ENSG00000196235|O00267-2|SUPT5H MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2226257324219 2 393.222469 784.430384 NaN NaN NaN NaN NaN NaN NaN 19.686 1 19.694 19.194 20.194 0.0078487 0 0 0 0.97444 1 10021 10021 0.79363 0 1 69662 9785 46481 47504 81207 81207 0.029546114718073113 VGSSGPEGK 9 Unmodified _VGSSGPEGK_ 0 0 0 REV__CON__P04258 REV__CON__P04258 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.206298828125 2 409.20615 816.397747 NaN NaN NaN NaN NaN NaN NaN 25.281 1 25.264 24.764 25.764 -0.017006 0 0 0 0.82396 1 12943 12943 4.756 0 1 + + 69663 16844 46482 47505 81208 81208 -0.01779640441702668 VGSSGPSY 8 Unmodified _VGSSGPSY_ 0 0 0 REV__nc|ENSG00000152102|A1KXE4-2|FAM168B REV__nc|ENSG00000152102|A1KXE4-2|FAM168B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1742248535156 2 377.174318 752.334084 NaN NaN NaN NaN NaN NaN NaN 25.481 1 25.481 24.981 25.981 0 0 0 0 0.97444 1 13065 13065 2.8892 0 1 + 69664 21102 46483 47506 81209 81209 -0.05199000878815241 VGSSKAVR 8 Unmodified _VGSSKAVR_ 0 0 0 REV__nc|ENSG00000188707|Q96FA7|ZBED10P REV__nc|ENSG00000188707|Q96FA7|ZBED10P MSMS AL20221201_MKP_PDAC_01 4 402.2406921386719 2 402.240327 802.466101 NaN NaN NaN NaN NaN NaN NaN 12.235 1 9.7532 9.2532 10.253 -2.482 0 0 0 0.83301 1 6181 6181 21.747 7.165 1 + 69665 29867 46484 47507 81210 81210 0.05696648928801551 VGSSKAVR 8 Unmodified _VGSSKAVR_ 0 0 0 REV__nc|ENSG00000188707|Q96FA7|ZBED10P REV__nc|ENSG00000188707|Q96FA7|ZBED10P MSMS AL20221201_MKP_PDAC_01 4 402.2408752441406 2 402.240327 802.466101 NaN NaN NaN NaN NaN NaN NaN 16.007 1 13.45 12.95 13.95 -2.557 0 0 0 0.92941 1 8261 8261 14.838 0.93222 1 + 69666 29867 46484 47507 81211 81211 0.05696648928801551 VGSSVHFFKI 10 Unmodified _VGSSVHFFKI_ 0 0 0 REV__ENSG00000066739|ENST00000359933|ATG2B REV__ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.305419921875 2 560.811116 1119.60768 0.76477 0.00042889 -3.4633 -0.0019423 -2.6985 -0.0015134 560.8119799142703 52.031 0.27535 51.973 51.772 52.047 -0.058918 33 12 3 0 0 0 0.64628 1 28135 28135 8.7454 0.83525 1 3970800 + 69667 17407 46485 47508 81212 81212 0.052660222312852056 VGSTWRFRV 9 Unmodified _VGSTWRFRV_ 0 0 0 ENSG00000147854|ENST00000276893|UHRF2;ENST00000484159.5_1_9:6434093-6493966:+|nuORF;nc|ENSG00000147854|Q96PU4-2|UHRF2;ENST00000431339.1_1_X:73326627-73327404:+|nuORF ENSG00000147854|ENST00000276893|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.3062133789062 2 554.306532 1106.59851 -0.036298 -2.012E-05 -0.39193 -0.00021725 -0.42822 -0.00023737 554.306315836035 20.27 0.32104 20.27 20.057 20.378 0 40 22 4 0 0 0 0.59218 1 10100 10100 1.8442 0.36234 1 1950300 69668 5885 46486 47509 81213 81213 0.04947673665606089 VGSVKKVG 8 Unmodified _VGSVKKVG_ 0 0 0 REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.2496032714844 2 387.247621 772.480688 NaN NaN NaN NaN NaN NaN NaN 19.624 1 19.652 19.152 20.152 0.028357 0 0 0 0.97444 1 9905 9905 0.79363 0 1 + 69669 21338 46487 47510 81214 81214 0.0853472107695552 VGSVKKVG 8 Unmodified _VGSVKKVG_ 0 0 0 REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2492065429688 2 387.247621 772.480688 NaN NaN NaN NaN NaN NaN NaN 16.084 1 16.089 15.589 16.589 0.0050564 0 0 0 0.97444 1 8048 8048 0.79363 0 1 + 69670 21338 46487 47510 81215 81215 0.0853472107695552 VGSVLQMWH 9 Unmodified _VGSVLQMWH_ 0 0 0 ENSG00000236104|ENST00000431845|ZBTB22 ENSG00000236104|ENST00000431845|ZBTB22 ENSG00000236104|ENST00000431845|ZBTB22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8483276367188 3 352.848022 1055.52224 0.96695 0.00034119 0.066572 2.349E-05 1.0335 0.00036468 352.8480585126852 41.426 0.54871 36.818 36.612 37.161 -4.6079 106 35 4 0 0 0 0.54213 1 24824 24824 4.897 4.897 1 99820000 69671 10644 46488 47511 81216 81216 -0.003304662260461555 VGSVRRAP 8 Unmodified _VGSVRRAP_ 0 0 0 REV__ENST00000608703.1_1_6:31783412-31784126:+|nuORF REV__ENST00000608703.1_1_6:31783412-31784126:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.22314453125 2 421.253769 840.492984 1.4604 0.0006152 0.28707 0.00012093 1.7475 0.00073613 421.2538476259871 81.481 0.39974 75.305 75.15 75.55 -6.1757 33 22 2 0 0 0 8.7369 1 53627 53627 2.5775 0 1 6630200 + 69672 26207 46489 47512 81217 81217 0.06635757539982023 VGSWIIYVQY 10 Unmodified _VGSWIIYVQY_ 0 0 0 nc|ENSG00000154511|Q5T7M9-2|DIPK1A;ENSG00000154511|ENST00000370310|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A nc|ENSG00000154511|Q5T7M9-2|DIPK1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.54833984375 3 409.88513 1226.63356 NaN NaN NaN NaN NaN NaN NaN 16.659 1 16.659 16.159 17.159 0 0 0 0 0.99091 1 8143 8143 0.69767 0 1 69673 6330 46490 47513 81218 81218 0.029308716829063997 VGSYLPPT 8 Unmodified _VGSYLPPT_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.222412109375 2 417.223811 832.433069 NaN NaN NaN NaN NaN NaN NaN 19.497 1 19.497 18.997 19.997 0 0 0 0 0.97444 1 9753 9753 0.79363 0 1 69674 2059 46491 47514 81219 81219 0.010150220860737136 VGSYSINA 8 Unmodified _VGSYSINA_ 0 0 0 REV__ENSG00000138246|ENST00000260818|DNAJC13 REV__ENSG00000138246|ENST00000260818|DNAJC13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8592224121094 2 405.703243 809.391933 NaN NaN NaN NaN NaN NaN NaN 17.914 1 17.928 17.428 18.428 0.013865 0 0 0 0.97444 1 8943 8943 0.79363 0 1 + 69675 20317 46492 47515 81220 81220 -0.020387389533993883 VGSYVLGIHK 10 Unmodified _VGSYVLGIHK_ 0 0 0 REV__ENST00000429685.1_1_2:203044091-203044292:+|nuORF REV__ENST00000429685.1_1_2:203044091-203044292:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2104797363281 3 358.209836 1071.60768 NaN NaN NaN NaN NaN NaN NaN 39.535 1 39.546 39.046 40.046 0.011452 0 0 0 0.96981 1 21060 21060 1.9064 0.1641 1 + 69676 26953 46493 47516 81221 81221 0.07474022231258459 VGSYVQTL 8 Unmodified _VGSYVQTL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.7349243164062 2 433.734543 865.454533 -0.27622 -0.00011981 0.85289 0.00036993 0.57667 0.00025012 433.7349380678543 33.589 0.45272 33.429 33.247 33.7 -0.15918 45 18 4 0 0 0 0.44122 1 17488 17488 40.449 2.2974 1 6915000 69677 10258 46494 47517 81222 81222 0.0164240711480943 VGSYVQTL 8 Unmodified _VGSYVQTL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7344970703125 2 433.734543 865.454533 0.18689 8.1063E-05 -0.3001 -0.00013016 -0.11321 -4.9102E-05 433.7344826350068 33.328 0.27519 33.357 33.208 33.483 0.028934 23 11 3 0 0 0 0.44122 1 17512 17512 40.449 8.3316 1 3088000 69678 10258 46494 47517 81223 81223 0.0164240711480943 VGSYVQTL 8 Unmodified _VGSYVQTL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7348937988281 2 433.734543 865.454533 1.3437 0.00058281 -0.84181 -0.00036512 0.50189 0.00021769 433.7340646811479 37.53 0.39678 33.246 32.991 33.387 -4.2835 39 23 2 0 0 0 0.72953 1 22041 22041 14.582 1.0738 1 13820000 69679 10258 46494 47517 81224 81224 0.0164240711480943 VGSYVQTLVY 10 Unmodified _VGSYVQTLVY_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8008422851562 2 564.800414 1127.58628 1.305 0.00073707 -0.13018 -7.3528E-05 1.1748 0.00066354 564.8006536012924 50.286 0.33532 44.747 44.565 44.9 -5.5391 35 21 2 0 0 0 0.067957 1 31513 31513 53.833 21.527 1 16812000 69680 10258 46495 47518 81225 81225 0.02758592411896643 VGTAFGSAGL 10 Unmodified _VGTAFGSAGL_ 0 0 0 nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1 nc|ENSG00000170486|Q14CN4-3|KRT72 nc|ENSG00000170486|Q14CN4-3|KRT72 MSMS AL20221201_MKP_PDAC_01 4 440.5494079589844 2 440.232168 878.449782 NaN NaN NaN NaN NaN NaN NaN 25.471 1 22.588 22.088 23.088 -2.8831 0 0 0 0.92825 1 13949 13949 6.7232 0 1 + 69681 185 46496 47519 81226 81226 0.00569522972057257 VGTAPVNI 8 Unmodified _VGTAPVNI_ 0 0 0 REV__nc|ENSG00000196352|P08174-6|CD55 REV__nc|ENSG00000196352|P08174-6|CD55 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.7250061035156 2 385.723978 769.433404 NaN NaN NaN NaN NaN NaN NaN 41.576 1 41.574 41.074 42.074 -0.0017929 0 0 0 0.97444 1 22229 22229 2.8892 0 1 + 69682 29879 46497 47520 81227 81227 0.03946441805953782 VGTATTAN 8 Unmodified _VGTATTAN_ 0 0 0 REV__nc|ENSG00000118263|O75840-6|KLF7 REV__nc|ENSG00000118263|O75840-6|KLF7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.6866455078125 2 367.687593 733.360633 NaN NaN NaN NaN NaN NaN NaN 17.273 1 17.287 16.787 17.787 0.013865 0 0 0 0.97444 1 8575 8575 0.79363 0 1 + 69683 29596 46498 47521 81228 81228 -0.016713119874793847 VGTAVTSL 8 Unmodified _VGTAVTSL_ 0 0 0 ENST00000570734.1_2_17:80696358-80706928:+|nuORF ENST00000570734.1_2_17:80696358-80706928:+|nuORF ENST00000570734.1_2_17:80696358-80706928:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2171020507812 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 21.615 1 21.629 21.129 22.129 0.013796 0 0 0 0.97444 1 11080 11080 2.5775 0 1 69684 15480 46499 47522 81229 81229 0.03406735569058128 VGTCSGFC 8 Unmodified _VGTCSGFC_ 0 0 0 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 ENSG00000179314|ENST00000317744|WSCD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.21337890625 2 387.151474 772.288396 NaN NaN NaN NaN NaN NaN NaN 17.409 1 17.409 16.909 17.909 0 0 0 0 0.97444 1 8575 8575 0.79363 0 1 69685 8827 46500 47523 81230 81230 -0.10685685657051636 VGTDHKLHLK 10 Unmodified _VGTDHKLHLK_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MSMS AL20221201_MKP_PDAC_01 4 383.2259826660156 3 383.224257 1146.65094 NaN NaN NaN NaN NaN NaN NaN 28.765 1 25.617 25.117 26.117 -3.1482 0 0 0 0.64375 1 16076 16076 12.175 0 1 69686 7103 46501 47524 81231 81231 0.0834821200855913 VGTDLSPEPKS 11 Unmodified _VGTDLSPEPKS_ 0 0 0 ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000579913.5_1_17:43591508-43591925:-|nuORF;ENST00000570311.1_1_17:45126763-45127807:+|nuORF;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3;ENST00000572638.1_1_17:44625595-44632942:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3 MSMS AL20221201_MKP_PDAC_01 4 377.1959838867188 3 377.196033 1128.56627 NaN NaN NaN NaN NaN NaN NaN 94.432 1 88.256 87.756 88.756 -6.1757 0 0 0 0.93933 1 62547 62547 1.2148 0 1 69687 8613;15494 46502 47525 81232 81232 0.007127966812731756 VGTDNRMR 8 Unmodified _VGTDNRMR_ 0 0 0 ENSG00000049167|ENST00000676185|ERCC8 ENSG00000049167|ENST00000676185|ERCC8 ENSG00000049167|ENST00000676185|ERCC8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.73583984375 2 474.737625 947.460698 NaN NaN NaN NaN NaN NaN NaN 16.734 1 16.734 16.234 17.234 0 0 0 0 0.97444 1 8186 8186 2.5775 0.73324 1 69688 705 46503 47526 81233 81233 -0.015133979253164398 VGTDRWRRF 9 Unmodified _VGTDRWRRF_ 0 0 0 REV__ENSG00000167646|ENST00000524407|DNAAF3 REV__ENSG00000167646|ENST00000524407|DNAAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5507507324219 3 398.215984 1191.62612 -0.58037 -0.00023111 -1.2216 -0.00048645 -1.8019 -0.00071756 398.21542053560086 18.175 0.13905 18.175 18.077 18.216 0 26 15 2 0 0 0 0.61256 1 8991 8991 0.26902 0 1 608910 + 69689 22234 46504 47527 81234 81234 0.03797576925830981 VGTEDALLQQL 11 Unmodified _VGTEDALLQQL_ 0 0 0 ENST00000460824.1_1_22:42342419-42343080:-|nuORF;nc|ENSG00000100162|Q9NSP4-4|CENPM;nc|ENSG00000100162|Q9NSP4-2|CENPM;ENST00000396437.3_1_22:42341142-42343146:-|nuORF;ENSG00000100162|ENST00000215980|CENPM ENST00000460824.1_1_22:42342419-42343080:-|nuORF ENST00000460824.1_1_22:42342419-42343080:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.289306640625 2 593.819335 1185.62412 0.4383 0.00026027 -2.3027 -0.0013674 -1.8644 -0.0011071 593.8178701569022 66.356 0.31481 60.181 59.965 60.28 -6.1757 24 17 2 0 0 0 0.27089 1 43108 43108 22.736 4.3632 1 8397300 69690 1763 46505 47528 81235 81235 0.03873058606723134 VGTELGVL 8 Unmodified _VGTELGVL_ 0 0 0 ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2324829101562 2 394.231636 786.448719 NaN NaN NaN NaN NaN NaN NaN 49.014 1 48.97 48.47 49.47 -0.04369 0 0 0 0.95607 1 26472 26472 9.3474 0 1 69691 11411 46506 47529 81236 81236 0.046953086031635394 VGTELGVL 8 Unmodified _VGTELGVL_ 0 0 0 ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5814819335938 2 394.231636 786.448719 0.0662 2.6098E-05 1.7224 0.00067903 1.7886 0.00070512 394.23241814589164 53.12 0.23771 53.057 52.919 53.157 -0.063423 16 11 2 0 0 0 8.7369 1 28733 28733 0.79363 0 1 1071900 69692 11411 46506 47529 81237 81237 0.046953086031635394 VGTELGVL 8 Unmodified _VGTELGVL_ 0 0 0 ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF ENST00000281038.9_1_11:78285613-78285736:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2144775390625 2 394.231636 786.448719 0.35988 0.00014188 2.0651 0.00081412 2.425 0.000956 394.23246508115 47.857 0.20868 47.818 47.661 47.869 -0.038647 17 9 2 0 0 0 8.7369 1 25747 25747 0 0 1 1055000 69693 11411 46506 47529 81238 81238 0.046953086031635394 VGTEQKHF 8 Unmodified _VGTEQKHF_ 0 0 0 ENST00000470263.5_1_3:82465294-82465330:+|nuORF ENST00000470263.5_1_3:82465294-82465330:+|nuORF ENST00000470263.5_1_3:82465294-82465330:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2443542480469 2 473.243067 944.47158 -0.10966 -5.1895E-05 1.3805 0.00065331 1.2708 0.00060141 473.243795627261 23.232 0.18109 23.232 23.126 23.307 0 12 8 2 0 0 0 0.80975 1 11846 11846 0.79363 0 1 376720 69694 13852 46507 47530 81239 81239 -0.0028767227937578355 VGTGARRA 8 Unmodified _VGTGARRA_ 0 0 0 REV__ENSG00000206113|ENST00000635017|CFAP99 REV__ENSG00000206113|ENST00000635017|CFAP99 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2161560058594 2 394.230294 786.446034 -0.031494 -1.2416E-05 3.2845 0.0012948 3.253 0.0012824 394.23185555219123 38.385 0.19326 38.402 38.291 38.484 0.01704 14 8 2 0 0 0 8.7369 1 20390 20390 0 0 1 1345000 + 69695 24250 46508 47531 81240 81240 0.04426897988844303 VGTGCAVD 8 Unmodified _VGTGCAVD_ 0 0 0 REV__ENSG00000124713|ENST00000372808|GNMT REV__ENSG00000124713|ENST00000372808|GNMT MSMS AL20221201_MKP_PDAC_01 4 360.8865661621094 2 361.162896 720.31124 NaN NaN NaN NaN NaN NaN NaN 61.697 1 55.521 55.021 56.021 -6.1757 0 0 0 0.97444 1 39757 39757 2.5775 0 1 + 69696 19462 46509 47532 81241 81241 -0.0601034326792842 VGTGPPSPI 9 Unmodified _VGTGPPSPI_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;ENST00000537632.1_1_12:68042913-68046304:+|nuORF ENSG00000127334|ENST00000344096|DYRK2 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 824.4528198242188 1 824.451245 823.443968 -0.096662 -7.9693E-05 1.2985 0.0010705 1.2018 0.00099084 824.4525227116785 65.147 0.26316 65.147 65.033 65.296 0 16 10 2 0 0 0 0.2143 1 36336 36336 21.747 0 1 651650 69697 3999 46510 47533 81242 81242 0.025184244603906336 VGTGQKTT 8 Unmodified _VGTGQKTT_ 0 0 0 ENST00000347708.4_1_8:145194626-145194866:+|nuORF ENST00000347708.4_1_8:145194626-145194866:+|nuORF ENST00000347708.4_1_8:145194626-145194866:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2158813476562 2 396.216517 790.418482 NaN NaN NaN NaN NaN NaN NaN 15.376 1 15.376 14.876 15.876 0 0 0 0 0.97444 1 7400 7400 0.79363 0 1 69698 12036 46511 47534 81243 81243 0.014889499379364679 VGTHKLMHIR 10 Unmodified _VGTHKLMHIR_ 0 0 0 REV__ENSG00000066422|ENST00000312938|ZBTB11 REV__ENSG00000066422|ENST00000312938|ZBTB11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8990173339844 3 397.897487 1190.67063 NaN NaN NaN NaN NaN NaN NaN 20.109 1 20.119 19.619 20.619 0.010372 0 0 0 1.0019 1 10247 10247 0.15932 0 1 + 69699 17402 46512 47535 81244 81244 0.08292264747660738 VGTHPFFFFFG 11 Unmodified _VGTHPFFFFFG_ 0 0 0 REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8826599121094 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 14.882 1 14.851 14.351 15.351 -0.030868 0 0 0 0.94301 1 7271 7271 0.094841 0 1 + 69700 27699 46513 47536 81245 81245 -0.015416912516911907 VGTHPFFFFFG 11 Unmodified _VGTHPFFFFFG_ 0 0 0 REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.7800903320312 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 28.968 1 28.906 28.406 29.406 -0.062159 0 0 0 0.94301 1 14969 14969 0.094841 0 1 + 69701 27699 46513 47536 81246 81246 -0.015416912516911907 VGTHPFFFFFG 11 Unmodified _VGTHPFFFFFG_ 0 0 0 REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF REV__ENST00000481710.5_1_21:35774452-35774542:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8829345703125 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 16.242 1 16.247 15.747 16.747 0.0050564 0 0 0 0.94301 1 8135 8135 0.094841 0 1 + 69702 27699 46513 47536 81247 81247 -0.015416912516911907 VGTHPPVGRT 10 Unmodified _VGTHPPVGRT_ 0 0 0 ENSG00000077063|ENST00000160373|CTTNBP2 ENSG00000077063|ENST00000160373|CTTNBP2 ENSG00000077063|ENST00000160373|CTTNBP2 MSMS AL20221201_MKP_PDAC_01 4 510.78515625 2 510.78289 1019.55123 NaN NaN NaN NaN NaN NaN NaN 28.946 1 25.645 25.145 26.145 -3.3016 0 0 0 0.47175 1 16190 16190 27.629 12.791 1 69703 1203 46514 47537 81248 81248 0.04223394394614388 VGTHRFVQ 8 Unmodified _VGTHRFVQ_ 0 0 0 nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 nc|ENSG00000113163|Q9Y5P4-3|CERT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2596435546875 2 472.259051 942.503549 -0.033302 -1.5727E-05 1.0503 0.00049601 1.017 0.00048028 472.25921897831034 37.556 0.26464 37.284 37.136 37.4 -0.27133 22 10 3 0 0 0 0.79982 1 19717 19717 6.7232 1.9672 1 3474600 69704 16129 46515 47538 81249 81249 0.02999740194422884 VGTHYFITV 9 Unmodified _VGTHYFITV_ 0 0 0 ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1|EYS;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS ENSG00000188107|ENST00000503581|EYS ENSG00000188107|ENST00000503581|EYS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7766723632812 2 518.776742 1035.53893 0.81759 0.00042415 -0.16314 -8.4633E-05 0.65445 0.00033951 518.7766208875906 64.443 0.28807 64.432 64.318 64.606 -0.010536 35 14 3 0 0 0 0.023164 1 35277 35277 60.39 0 1 5771900 69705 9628 46516 47539 81250 81250 0.022583579315323732 VGTIERRSP 9 Unmodified _VGTIERRSP_ 0 0 0 REV__ENSG00000099864|ENST00000338448|PALM REV__ENSG00000099864|ENST00000338448|PALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.788330078125 2 507.788173 1013.56179 0.57839 0.0002937 -0.042968 -2.1819E-05 0.53543 0.00027188 507.7881462725467 22.303 0.35949 19.568 19.374 19.733 -2.7348 46 18 3 0 0 0 0.30562 1 12027 12027 16.942 3.0362 1 18874000 + 69706 17987 46517 47540 81251 81251 0.05555377049051913 VGTINESYAC 10 Unmodified _VGTINESYAC_ 0 0 0 REV__ENST00000378526.8_2_17:33310064-33310118:+|nuORF REV__ENST00000378526.8_2_17:33310064-33310118:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.3287353515625 2 528.736957 1055.45936 0.15368 8.1255E-05 -2.1347 -0.0011287 -1.981 -0.0010474 528.7356446886191 77.605 0.18819 77.655 77.533 77.721 0.05011 13 7 2 0 0 0 0.23227 1 42808 42808 10.824 2.9138 1 2090400 + 69707 26268 46518 47541 81252 81252 -0.06615076804746423 VGTINPHFWR 10 Unmodified _VGTINPHFWR_ 0 0 0 REV__nc|ENSG00000179295|Q06124-1|PTPN11 REV__nc|ENSG00000179295|Q06124-1|PTPN11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5527954101562 3 409.552485 1225.63563 NaN NaN NaN NaN NaN NaN NaN 22.027 1 22.041 21.541 22.541 0.013796 0 0 0 1.0047 1 11303 11303 0.15932 0 1 + 69708 23090 46519 47542 81253 81253 0.031833452113460226 VGTIPPAP 8 Unmodified _VGTIPPAP_ 0 0 0 ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7 ENSG00000044090|ENST00000265348|CUL7 ENSG00000044090|ENST00000265348|CUL7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2203674316406 2 376.221072 750.42759 NaN NaN NaN NaN NaN NaN NaN 19.227 1 19.235 18.735 19.735 0.0078487 0 0 0 0.97444 1 9774 9774 0.79363 0 1 69709 670 46520 47543 81254 81254 0.042393432942731124 VGTITFVTFL 10 Unmodified _VGTITFVTFL_ 0 0 0 REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1 REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.3170166015625 2 549.3157 1096.61685 0.92881 0.00051021 -0.78861 -0.0004332 0.1402 7.7013E-05 549.3150003033358 81.417 1.383 75.241 74.66 76.044 -6.1757 114 78 2 0 0 0 0.1028 1 53630 53630 46.021 6.0636 1 32053000 + 69710 22923 46521 47544 81255 81255 0.07240370796944262 VGTKALSTT 9 Unmodified _VGTKALSTT_ 0 0 0 nc|ENSG00000214021|Q9Y4R7-5|TTLL3;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3 nc|ENSG00000214021|Q9Y4R7-5|TTLL3 nc|ENSG00000214021|Q9Y4R7-5|TTLL3 MSMS AL20221201_MKP_PDAC_01 4 439.2458190917969 2 439.2531 876.491647 NaN NaN NaN NaN NaN NaN NaN 90.208 1 84.032 83.532 84.532 -6.1757 0 0 0 0.7453 1 59570 59570 7.9102 2.6795 1 69711 10475 46522 47545 81256 81256 0.04846078660557396 VGTKARSTHAL 11 Unmodified _VGTKARSTHAL_ 0 0 0 REV__ENST00000394947.7_1_15:75663751-75664036:-|nuORF REV__ENST00000394947.7_1_15:75663751-75664036:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8880310058594 3 380.887645 1139.64111 NaN NaN NaN NaN NaN NaN NaN 19.168 1 19.191 18.691 19.691 0.023106 0 0 0 0.93893 1 9652 9652 1.3296 0 1 + 69712 26461 46523 47546 81257 81257 0.07687024003189435 VGTKLFTTCF 10 Unmodified _VGTKLFTTCF_ 0 0 0 REV__ENST00000376495.4_1_10:23730114-23730228:+|nuORF REV__ENST00000376495.4_1_10:23730114-23730228:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.7924194335938 2 558.791535 1115.56852 1.0528 0.0005883 -0.471 -0.00026319 0.58181 0.00032511 558.791173629186 65.449 0.32125 65.449 65.282 65.603 7.6294E-06 34 14 3 0 0 0 0.27276 1 35862 35862 29.082 12.139 1 15656000 + 69713 26226 46524 47547 81258 81258 0.015355538854009865 VGTKPGRI 8 Unmodified _VGTKPGRI_ 0 0 0 REV__ENST00000396516.6_1_16:11855341-11855784:-|nuORF REV__ENST00000396516.6_1_16:11855341-11855784:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2450256347656 2 414.25852 826.502486 NaN NaN NaN NaN NaN NaN NaN 17.495 1 17.5 17 18 0.0050564 0 0 0 0.97444 1 8826 8826 0.79363 0 1 + 69714 26508 46525 47548 81259 81259 0.08229525825527162 VGTKVGFR 8 Unmodified _VGTKVGFR_ 0 0 0 REV__ENST00000563612.1_3_16:77225118-77225190:+|nuORF REV__ENST00000563612.1_3_16:77225118-77225190:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.2589721679688 2 432.25852 862.502486 NaN NaN NaN NaN NaN NaN NaN 55.598 1 55.598 55.098 56.098 0 0 0 0 0.97444 1 30893 30893 0.79363 0 1 + 69715 28878 46526 47549 81260 81260 0.06573525825524484 VGTLALLVP 9 Unmodified _VGTLALLVP_ 0 0 0 REV__ENSG00000197241|ENST00000400906|SLC2A7 REV__ENSG00000197241|ENST00000400906|SLC2A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7874450683594 2 441.786579 881.558604 NaN NaN NaN NaN NaN NaN NaN 38.382 1 38.399 37.899 38.899 0.01704 0 0 0 0.84369 1 20408 20408 2.3027 0 1 + 69716 23909 46527 47550 81261 81261 0.11308733942337312 VGTLETKE 8 Unmodified _VGTLETKE_ 0 0 0 REV__ENSG00000009413|ENST00000368802|REV3L REV__ENSG00000009413|ENST00000368802|REV3L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.7372131347656 2 438.737283 875.460012 NaN NaN NaN NaN NaN NaN NaN 17.092 1 17.092 16.592 17.592 0 0 0 0 0.97444 1 8394 8394 0.79363 0 1 + 69717 17033 46528 47551 81262 81262 0.01730085906626755 VGTLGPPL 8 Unmodified _VGTLGPPL_ 0 0 0 ENST00000162391.7_1_12:8185724-8186174:+|nuORF ENST00000162391.7_1_12:8185724-8186174:+|nuORF ENST00000162391.7_1_12:8185724-8186174:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2283325195312 2 377.228897 752.44324 NaN NaN NaN NaN NaN NaN NaN 30.816 1 30.713 30.213 31.213 -0.10269 0 0 0 0.97444 1 16002 16002 2.8892 0 1 69718 10975 46529 47552 81263 81263 0.057116298113214725 VGTLLSGHSGF 11 Unmodified _VGTLLSGHSGF_ 0 0 0 ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1 ENST00000354485.5_1_9:676972-730286:+|nuORF ENST00000354485.5_1_9:676972-730286:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.25927734375 2 537.782556 1073.55056 -0.0058677 -3.1555E-06 0.46414 0.0002496 0.45827 0.00024645 537.7828542873035 41.922 0.24479 41.922 41.804 42.049 0 24 12 3 0 0 0 0.28752 1 22737 22737 9.3831 1.473 1 4140200 69719 2474 46530 47553 81264 81264 0.016725549548937124 VGTLPVAFV 9 Unmodified _VGTLPVAFV_ 0 0 0 nc|ENSG00000131697|O75161-2|NPHP4 nc|ENSG00000131697|O75161-2|NPHP4 nc|ENSG00000131697|O75161-2|NPHP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.7716979980469 2 451.770929 901.527304 1.3602 0.00061449 -0.46707 -0.00021101 0.8931 0.00040348 451.77073129549706 86.552 0.2181 80.377 80.196 80.414 -6.1757 14 11 2 0 0 0 0.052168 1 57050 57050 44.407 2.3125 1 6873300 69720 16190 46531 47554 81265 81265 0.07260160908231228 VGTLQNKRV 9 Unmodified _VGTLQNKRV_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8069458007812 2 507.806365 1013.59818 1.1183 0.00056787 -0.21765 -0.00011052 0.90063 0.00045735 507.80628371180165 37.309 0.31972 33.026 32.857 33.176 -4.2835 41 18 3 0 0 0 0.43463 1 21963 21963 10.824 1.4408 1 14080000 69721 6719 46532 47555 81266 81266 0.09192253945752782 VGTLQNKRV 9 Unmodified _VGTLQNKRV_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.806365 1013.59818 0.1589 8.0691E-05 0.37409 0.00018996 0.53299 0.00027066 507.8067046387529 33.022 0.13951 33.052 32.979 33.118 0.029743 0.00073763 0.00018158 NaN 10.824 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 612590 69722 6719 46532 47555 0.09192253945752782 VGTLQNKRV 9 Unmodified _VGTLQNKRV_ 0 0 0 ENSG00000160326|ENST00000371899|SLC2A6;nc|ENSG00000160326|Q9UGQ3-2|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 ENSG00000160326|ENST00000371899|SLC2A6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 507.806365 1013.59818 1.1183 0.00056787 -0.21765 -0.00011052 0.90063 0.00045735 507.80628371180165 37.309 0.31972 33.026 32.857 33.176 -4.2835 -0.025224 -0.0004194 NaN 10.824 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 14080000 69723 6719 46532 47555 0.09192253945752782 VGTLSDQPTHT 11 Unmodified _VGTLSDQPTHT_ 0 0 0 REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.85986328125 3 385.859532 1154.55677 -0.47679 -0.00018398 -0.53405 -0.00020607 -1.0108 -0.00039005 385.8592661719509 20.106 0.093874 20.106 20.049 20.143 0 14 8 2 0 0 0 0.73115 1 10105 10105 0.45452 0 1 667000 + 69724 20008 46533 47556 81267 81267 -0.014329716042539076 VGTLSDQPTHT 11 Unmodified _VGTLSDQPTHT_ 0 0 0 REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA REV__nc|ENSG00000134769|Q9Y4J8-6|DTNA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 385.859532 1154.55677 -0.47679 -0.00018398 -0.53405 -0.00020607 -1.0108 -0.00039005 385.8592661719509 20.106 0.093874 20.106 20.049 20.143 0 0 0 NaN 0.45452 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 667000 + 69725 20008 46533 47556 -0.014329716042539076 VGTLSPLIIDV 11 Unmodified _VGTLSPLIIDV_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.8389282226562 2 563.839539 1125.66453 NaN NaN NaN NaN NaN NaN NaN 30.809 1 30.839 30.339 31.339 0.030106 0 0 0 0.93648 1 16119 16119 3.2813 2.4877 1 + 69726 27251 46534 47557 81268 81268 0.10672024997143126 VGTLSQLRE 9 Unmodified _VGTLSQLRE_ 0 0 0 ENST00000552943.5_1_16:704926-706047:+|nuORF;ENST00000420061.6_1_16:699416-706047:+|nuORF;ENST00000549648.5_1_16:699416-706047:+|nuORF ENST00000552943.5_1_16:704926-706047:+|nuORF ENST00000552943.5_1_16:704926-706047:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7828979492188 2 501.782556 1001.55056 NaN NaN NaN NaN NaN NaN NaN 19.266 1 19.266 18.766 19.766 0 0 0 0 0.84564 1 9625 9625 2.0598 0 1 69727 13096 46535 47558 81269 81269 0.04984554954910436 VGTLTTIDLK 10 Unmodified _VGTLTTIDLK_ 0 0 0 REV__ENSG00000164258|ENST00000296684|NDUFS4 REV__ENSG00000164258|ENST00000296684|NDUFS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8173217773438 2 530.816064 1059.61758 0.98185 0.00052118 1.4862 0.00078888 2.468 0.0013101 530.8164330785971 51.09 0.40527 45.441 45.217 45.622 -5.649 69 24 4 0 0 0 0.34249 1 32060 32060 24.991 3.2443 1 88686000 + 69728 21895 46536 47559 81270 81270 0.09015165445998718 VGTNLTDI 8 Unmodified _VGTNLTDI_ 0 0 0 ENST00000570910.1_1_17:79649904-79650744:-|nuORF;ENSG00000214087|ENST00000622299|ARL16;nc|ENSG00000214087|Q0P5N6|ARL16 ENST00000570910.1_1_17:79649904-79650744:-|nuORF ENST00000570910.1_1_17:79649904-79650744:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.7240905761719 2 416.724175 831.433798 NaN NaN NaN NaN NaN NaN NaN 20.217 1 20.217 19.717 20.717 0 0 0 0 0.97444 1 10161 10161 2.8892 0 1 69729 10480 46537 47560 81271 81271 0.011338167351482298 VGTPSPTL 8 Unmodified _VGTPSPTL_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.216552734375 2 386.215986 770.417419 -0.29149 -0.00011258 1.2753 0.00049255 0.98384 0.00037997 386.21656735534964 31.884 0.30592 31.914 31.753 32.059 0.030106 19 13 2 0 0 0 0.80975 1 16688 16688 0.79363 0 1 4315300 69730 1692 46538 47561 81272 81272 0.023027355690601325 VGTPVGTI 8 Unmodified _VGTPVGTI_ 0 0 0 ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13;ENST00000528704.1_1_11:46678670-46678742:+|nuORF;ENST00000528984.5_1_11:46678586-46685654:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2025756835938 2 372.218529 742.422505 -0.15493 -5.7668E-05 2.9787 0.0011087 2.8238 0.0010511 372.21967010901443 44.764 0.24535 44.742 44.574 44.82 -0.022064 22 12 2 0 0 0 8.7369 1 23972 23972 0 0 1 17896000 69731 8500 46539 47562 81273 81273 0.04099039431685014 VGTPWTGR 8 Unmodified _VGTPWTGR_ 0 0 0 ENST00000402615.6_1_14:105246507-105259760:-|nuORF ENST00000402615.6_1_14:105246507-105259760:-|nuORF ENST00000402615.6_1_14:105246507-105259760:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2338562011719 2 437.232502 872.450451 1.198 0.00052382 1.2385 0.00054152 2.4366 0.0010653 437.2328829668783 46.405 0.30167 46.371 46.246 46.548 -0.033417 37 14 3 0 0 0 0.80975 1 25032 25032 0.79363 0 1 12238000 69732 12892 46540 47563 81274 81274 0.009123624117705731 VGTPWTGR 8 Unmodified _VGTPWTGR_ 0 0 0 ENST00000402615.6_1_14:105246507-105259760:-|nuORF ENST00000402615.6_1_14:105246507-105259760:-|nuORF ENST00000402615.6_1_14:105246507-105259760:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2338256835938 2 437.232502 872.450451 1.4544 0.00063593 0.7426 0.00032469 2.197 0.00096062 437.2325150624711 49.956 0.4248 49.907 49.723 50.148 -0.048828 41 20 3 0 0 0 0.80975 1 26917 26917 0.79363 0 1 3444000 69733 12892 46540 47563 81275 81275 0.009123624117705731 VGTQRGGG 8 Unmodified _VGTQRGGG_ 0 0 0 REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF REV__ENST00000262186.9_1_7:150671930-150675339:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1942749023438 2 366.193377 730.372201 NaN NaN NaN NaN NaN NaN NaN 14.537 1 14.537 14.037 15.037 0 0 0 0 0.97444 1 6918 6918 0.79363 0 1 + 69734 25014 46541 47564 81276 81276 -0.0037707017346519933 VGTQSLKY 8 Unmodified _VGTQSLKY_ 0 0 0 ENSG00000032389|ENST00000382125|EIPR1 ENSG00000032389|ENST00000382125|EIPR1 ENSG00000032389|ENST00000382125|EIPR1 MSMS AL20221201_MKP_PDAC_01 4 448.2474365234375 2 448.247818 894.481082 NaN NaN NaN NaN NaN NaN NaN 18.338 1 15.716 15.216 16.216 -2.6215 0 0 0 0.97444 1 9652 9652 4.756 0 1 69735 592 46542 47565 81277 81277 0.029620960061379265 VGTRATDTK 9 Unmodified _VGTRATDTK_ 0 0 0 ENSG00000174450|ENST00000567107|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2601623535156 2 474.759081 947.503609 0.2756 0.00013084 -0.17851 -8.4749E-05 0.097086 4.6092E-05 474.7589758227952 39.714 0.39162 39.719 39.503 39.894 0.0050583 37 18 3 0 0 0 0.59218 1 21224 21224 1.8442 0.36234 1 4478200 69736 8422 46543 47566 81278 81278 0.02775695403749978 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7724609375 2 519.771991 1037.52943 0.75438 0.0003921 0.76677 0.00039855 1.5211 0.00079065 519.7721665808749 36.772 0.30659 36.772 36.61 36.916 0 24 14 2 0 0 0 0.047196 1 19504 19504 46.021 11.919 1 3798900 + 69737 28412 46544 47567 81279 81279 0.012165896460601289 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7725219726562 2 519.771991 1037.52943 -0.34847 -0.00018113 1.5168 0.00078838 1.1683 0.00060725 519.7730343926835 37.057 0.25442 36.807 36.688 36.942 -0.2497 19 10 2 0 0 0 0.12424 1 19473 19473 30.637 12.502 1 1715000 + 69738 28412 46544 47567 81280 81280 0.012165896460601289 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7725830078125 2 519.771991 1037.52943 1.7499 0.00090957 -1.2295 -0.00063907 0.52041 0.0002705 519.7713407930855 41.759 0.33124 37.151 37.014 37.345 -4.6079 46 20 3 0 0 0 0.028475 1 25132 25132 56.177 25.952 1 20414000 + 69739 28412 46544 47567 81281 81281 0.012165896460601289 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.771991 1037.52943 0.75438 0.0003921 0.76677 0.00039855 1.5211 0.00079065 519.7721665808749 36.772 0.30659 36.772 36.61 36.916 0 -0.13796 0.00081053 NaN 56.177 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3798900 + 69740 28412 46544 47567 0.012165896460601289 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 519.771991 1037.52943 -0.34847 -0.00018113 1.5168 0.00078838 1.1683 0.00060725 519.7730343926835 37.057 0.25442 36.807 36.688 36.942 -0.2497 -0.10313 0.0015902 NaN 56.177 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1715000 + 69741 28412 46544 47567 0.012165896460601289 VGTRFPAQY 9 Unmodified _VGTRFPAQY_ 0 0 0 REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF REV__ENST00000528797.5_1_11:57413095-57413371:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 519.771991 1037.52943 1.7499 0.00090957 -1.2295 -0.00063907 0.52041 0.0002705 519.7713407930855 41.759 0.33124 37.151 37.014 37.345 -4.6079 0.24108 -0.0012647 NaN 56.177 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 20414000 + 69742 28412 46544 47567 0.012165896460601289 VGTRPINL 8 Unmodified _VGTRPINL_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2636108398438 2 435.263802 868.513051 0.92717 0.00040356 0.64705 0.00028164 1.5742 0.0006852 435.26403644873494 40.621 0.3541 36.092 35.889 36.243 -4.5294 31 21 2 0 0 0 0.75262 1 24263 24263 12.532 0 1 8182900 + 69743 177 46545 47568 81282 81282 0.07353508479945958 VGTRRLSD 8 Unmodified _VGTRRLSD_ 0 0 0 REV__ENSG00000164244|ENST00000296666|PRRC1 REV__ENSG00000164244|ENST00000296666|PRRC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2526245117188 2 452.253966 902.493378 NaN NaN NaN NaN NaN NaN NaN 0.034596 1 -0.039323 -0.53932 0.46068 -0.07392 0 0 0 0.97444 1 17 17 0.79363 0 1 + 69744 21894 46546 47569 81283 81283 0.03823132469176471 VGTRRQLG 8 Unmodified _VGTRRQLG_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-2|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7656555175781 2 443.764501 885.514448 1.0958 0.00048628 -0.17551 -7.7885E-05 0.92029 0.00040839 443.7645741928836 91.56 0.42289 85.385 85.127 85.55 -6.1757 36 22 2 0 0 0 0.80676 1 60562 60562 2.5775 2.5775 1 12012000 69745 2734 46547 47570 81284 81284 0.06711142568701689 VGTRRYFY 8 Unmodified _VGTRRYFY_ 0 0 0 REV__ENSG00000175073|ENST00000310421|VCPIP1 REV__ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2796020507812 2 531.279983 1060.54541 0.29997 0.00015937 -1.7324 -0.00092037 -1.4324 -0.000761 531.2791286986092 97.254 0.34946 97.011 96.796 97.146 -0.24277 30 15 3 0 0 0 0.80624 1 53170 53170 2.8892 0.31174 1 803070 + 69746 22837 46548 47571 81285 81285 0.017562958829330455 VGTSAERAL 9 Unmodified _VGTSAERAL_ 0 0 0 REV__nc|ENSG00000175216|Q14008-2|CKAP5 REV__nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2494812011719 2 452.248349 902.482145 1.3153 0.00059484 -1.0222 -0.00046229 0.2931 0.00013255 452.2480302922823 21.229 0.35325 18.536 18.339 18.692 -2.693 40 23 2 0 0 0 0.07916 1 11277 11277 37.974 1.847 1 6423400 + 69747 22852 46549 47572 81286 81286 0.027003103750416813 VGTSLCGV 8 Unmodified _VGTSLCGV_ 0 0 0 nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-7|CLN3 nc|ENSG00000261832|Q13286-4|CLN3 nc|ENSG00000261832|Q13286-4|CLN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1900939941406 2 368.188914 734.363275 NaN NaN NaN NaN NaN NaN NaN 16.041 1 16.041 15.541 16.541 0 0 0 0 0.97444 1 7785 7785 0.79363 0 1 69748 9674 46550 47573 81287 81287 -0.014531798541611352 VGTSSSESTHP 11 Unmodified _VGTSSSESTHP_ 0 0 0 ENST00000471343.5_1_2:11586605-11591348:-|nuORF;nc|ENSG00000169016|O75461-2|E2F6;nc|ENSG00000169016|O75461-3|E2F6;ENSG00000169016|ENST00000381525|E2F6 ENST00000471343.5_1_2:11586605-11591348:-|nuORF ENST00000471343.5_1_2:11586605-11591348:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.745849609375 2 544.746367 1087.47818 0.12428 6.7703E-05 -0.72677 -0.0003959 -0.60248 -0.0003282 544.7459787105036 65.297 0.55212 65.297 65.072 65.624 0 96 21 8 0 0 0 0.6889 1 36392 36392 5.2969 2.3016 1 12105000 69749 7824 46551 47574 81288 81288 -0.06205823909317587 VGTSTSAY 8 Unmodified _VGTSTSAY_ 0 0 0 nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-6|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 nc|ENSG00000144406|Q8N2C7-4|UNC80 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1870422363281 2 393.187426 784.360298 NaN NaN NaN NaN NaN NaN NaN 30.479 1 30.399 29.899 30.899 -0.080429 0 0 0 0.97444 1 15819 15819 0.79363 0 1 69750 5606 46552 47575 81289 81289 -0.04050731707332034 VGTSVVSV 8 Unmodified _VGTSVVSV_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2175903320312 2 374.215986 746.417419 NaN NaN NaN NaN NaN NaN NaN 18.287 1 18.293 17.793 18.793 0.0060463 0 0 0 0.97444 1 9262 9262 2.8892 0 1 69751 385 46553 47576 81290 81290 0.03406735569058128 VGTTNQAL 8 Unmodified _VGTTNQAL_ 0 0 0 REV__ENST00000467617.1_1_22:41363819-41368518:+|nuORF REV__ENST00000467617.1_1_22:41363819-41368518:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2157897949219 2 402.216517 802.418482 NaN NaN NaN NaN NaN NaN NaN 14.896 1 14.902 14.402 15.402 0.0057774 0 0 0 0.97444 1 7404 7404 0.79363 0 1 + 69752 27437 46554 47577 81291 81291 0.009369499379317858 VGTTNQGD 8 Unmodified _VGTTNQGD_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.1789245605469 2 396.180132 790.345711 NaN NaN NaN NaN NaN NaN NaN 20.799 1 20.799 20.299 21.299 0 0 0 0 0.97444 1 10483 10483 2.3027 0.65011 1 69753 1301 46555 47578 81292 81292 -0.05784803855476639 VGTTSKTA 8 Unmodified _VGTTSKTA_ 0 0 0 ENST00000557277.5_2_14:65544732-65569234:-|nuORF ENST00000557277.5_2_14:65544732-65569234:-|nuORF ENST00000557277.5_2_14:65544732-65569234:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.7094421386719 2 382.711068 763.407583 NaN NaN NaN NaN NaN NaN NaN 27.444 1 27.473 26.973 27.973 0.028664 0 0 0 0.97444 1 14262 14262 1.8442 0 1 69754 15257 46556 47579 81293 81293 0.016415475636563315 VGTVADLF 8 Unmodified _VGTVADLF_ 0 0 0 nc|ENSG00000138115|P10632-2|CYP2C8;ENST00000526814.5_1_10:96796887-96827187:-|nuORF;ENSG00000138115|ENST00000371270|CYP2C8 nc|ENSG00000138115|P10632-2|CYP2C8 nc|ENSG00000138115|P10632-2|CYP2C8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.8898315429688 2 411.223811 820.433069 NaN NaN NaN NaN NaN NaN NaN 20.673 1 20.683 20.183 21.183 0.010553 0 0 0 0.97444 1 10550 10550 2.8892 0 1 69755 5020 46557 47580 81294 81294 0.015670220860897643 VGTVDVTV 8 Unmodified _VGTVDVTV_ 0 0 0 REV__nc|ENSG00000170776|Q12802-4|AKAP13 REV__nc|ENSG00000170776|Q12802-4|AKAP13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.8675537109375 2 395.221268 788.427984 NaN NaN NaN NaN NaN NaN NaN 16.675 1 16.675 16.175 17.175 0 0 0 0 0.97444 1 8152 8152 0.79363 0 1 + 69756 22508 46558 47581 81295 81295 0.02530718223488293 VGTVELPVL 9 Unmodified _VGTVELPVL_ 0 0 0 REV__ENSG00000130287|ENST00000252575|NCAN REV__ENSG00000130287|ENST00000252575|NCAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7825317382812 2 463.781493 925.548434 1.0129 0.00046976 -0.098444 -4.5656E-05 0.91446 0.00042411 463.78149697826206 60.494 0.3273 60.494 60.368 60.695 0 25 14 2 0 0 0 0.2001 1 33712 33712 23.148 1.4018 1 1513500 + 69757 19711 46559 47582 81296 81296 0.08268126217080862 VGTVLREAI 9 Unmodified _VGTVLREAI_ 0 0 0 ENST00000440581.1_1_6:7517452-7517767:-|nuORF ENST00000440581.1_1_6:7517452-7517767:-|nuORF ENST00000440581.1_1_6:7517452-7517767:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2898864746094 2 479.290017 956.565481 NaN NaN NaN NaN NaN NaN NaN 57.25 1 56.76 56.26 57.26 -0.48974 0 0 0 0.18753 1 31112 31112 32.305 3.8186 1 69758 13386 46560 47583 81297 81297 0.0854604682289164 VGTVMIVVPN 10 Unmodified _VGTVMIVVPN_ 0 0 0 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7942504882812 2 514.794078 1027.5736 0.94679 0.0004874 0.53348 0.00027463 1.4803 0.00076203 514.7939519977112 48.514 0.44713 43.118 42.871 43.318 -5.3961 68 26 4 0 0 0 0.33553 1 30133 30133 25.399 4.9457 1 108620000 + 69759 24457 46561 47584 81298 81298 0.060918577480151725 VGTVMIVVPN 10 Unmodified _VGTVMIVVPN_ 0 0 0 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 514.794078 1027.5736 0.061944 3.1888E-05 -0.69694 -0.00035878 -0.635 -0.00032689 514.7943385963532 43.411 0.24503 43.411 43.3 43.545 0 0.14641 -0.0010751 NaN 25.399 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 6625500 + 69760 24457 46561 47584 0.060918577480151725 VGTVMIVVPN 10 Unmodified _VGTVMIVVPN_ 0 0 0 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 REV__nc|ENSG00000242019|Q8N743|KIR3DL3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 514.794078 1027.5736 0.94679 0.0004874 0.53348 0.00027463 1.4803 0.00076203 514.7939519977112 48.514 0.44713 43.118 42.871 43.318 -5.3961 -0.14641 0.00019175 NaN 25.399 68 26 4 NaN NaN NaN NaN 0 NaN NaN 0 108620000 + 69761 24457 46561 47584 0.060918577480151725 VGTVPLHDLK 10 Unmodified _VGTVPLHDLK_ 0 0 0 REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8126831054688 2 539.816399 1077.61824 0.67345 0.00036354 -1.8563 -0.0010021 -1.1829 -0.00063853 539.815044789472 69.363 0.87709 63.187 62.869 63.746 -6.1757 88 47 2 0 0 0 0.23548 1 45215 45215 31.268 2.1868 1 45904000 + 69762 28715 46562 47585 81299 81299 0.0825400488570267 VGTVPLHDLK 10 Unmodified _VGTVPLHDLK_ 0 0 0 REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF REV__ENST00000551528.5_1_12:42604222-42604489:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 539.8137817382812 2 539.816399 1077.61824 NaN NaN NaN NaN NaN NaN NaN 69.044 1 62.869 62.369 63.369 -6.1757 0 0 0 0.40102 1 45080 45080 31.268 2.7738 1 + 69763 28715 46562 47585 81300 81300 0.0825400488570267 VGTVQVTLF 9 Unmodified _VGTVQVTLF_ 0 0 0 nc|ENSG00000005238|Q7L5A3-2|ATOSB;ENSG00000005238|ENST00000322813|ATOSB;nc|ENSG00000005238|Q7L5A3-3|ATOSB nc|ENSG00000005238|Q7L5A3-2|ATOSB nc|ENSG00000005238|Q7L5A3-2|ATOSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2792358398438 2 482.279118 962.543683 NaN NaN NaN NaN NaN NaN NaN 67.812 1 67.33 66.83 67.83 -0.48218 0 0 0 0.84369 1 37053 37053 2.3027 0 1 69764 304 46563 47586 81301 81301 0.060912420743420626 VGTVSCSL 8 Unmodified _VGTVSCSL_ 0 0 0 REV__ENST00000540139.5_3_11:61120480-61121493:-|nuORF REV__ENST00000540139.5_3_11:61120480-61121493:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.1939392089844 2 383.194196 764.37384 NaN NaN NaN NaN NaN NaN NaN 21.325 1 18.59 18.09 19.09 -2.7348 0 0 0 0.9706 1 11409 11409 6.3541 0 1 + 69765 28575 46564 47587 81302 81302 -0.017771971997376568 VGTVSLPG 8 Unmodified _VGTVSLPG_ 0 0 0 REV__ENST00000477438.1_1_22:44564113-44564555:+|nuORF REV__ENST00000477438.1_1_22:44564113-44564555:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1761474609375 2 365.210704 728.406855 0.38579 0.00014089 3.0889 0.0011281 3.4747 0.001269 365.2116933205086 40.583 0.20647 40.588 40.489 40.695 0.0050545 14 9 2 0 0 0 8.7369 1 21610 21610 2.5775 0 1 977570 + 69766 27612 46565 47588 81303 81303 0.031787529146299676 VGTVVELG 8 Unmodified _VGTVVELG_ 0 0 0 nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2248840332031 2 387.223811 772.433069 0.34732 0.00013449 2.1602 0.00083649 2.5076 0.00097098 387.2244158900013 40.742 0.45625 40.741 40.395 40.851 -0.0017929 30 21 2 0 0 0 0.80975 1 21722 21722 0.79363 0 1 5047200 69767 9964 46566 47589 81304 81304 0.03775022086108493 VGTWRNNT 8 Unmodified _VGTWRNNT_ 0 0 0 ENSG00000188050|ENST00000340112|RNF133 ENSG00000188050|ENST00000340112|RNF133 ENSG00000188050|ENST00000340112|RNF133 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2378845214844 2 474.238316 946.462078 NaN NaN NaN NaN NaN NaN NaN 18.17 1 18.176 17.676 18.676 0.0060463 0 0 0 0.97444 1 9196 9196 0.79363 0 1 69768 9622 46567 47590 81305 81305 -0.0132944056491624 VGTYDDFHTI 10 Unmodified _VGTYDDFHTI_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-4|CLCN3;ENST00000502998.1_1_4:170601253-170601544:+|nuORF nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8472900390625 3 389.848744 1166.5244 NaN NaN NaN NaN NaN NaN NaN 15.662 1 15.662 15.162 16.162 0 0 0 0 0.98914 1 7564 7564 0.77653 0 1 69769 16111 46568 47591 81306 81306 -0.052197590072410094 VGTYYDLGR 9 Unmodified _VGTYYDLGR_ 0 0 0 REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2614135742188 2 522.261456 1042.50836 NaN NaN NaN NaN NaN NaN NaN 33.244 1 33.085 32.585 33.585 -0.15918 0 0 0 0.82396 1 17335 17335 4.756 0.42677 1 + 69770 22481 46569 47592 81307 81307 -0.011194204534831442 VGVAGKNG 8 Unmodified _VGVAGKNG_ 0 0 0 REV__nc|ENSG00000168918|Q92835-3|INPP5D REV__nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.2009582519531 2 351.20067 700.386788 1.4844 0.00052131 -1.6261 -0.00057108 -0.14173 -4.9775E-05 351.20014310737565 77.651 0.43018 71.476 71.254 71.684 -6.1757 40 24 2 0 0 0 0.80992 1 50869 50869 0.69038 0 1 10862000 + 69771 22361 46570 47593 81308 81308 0.02461001974654664 VGVALDLPP 9 Unmodified _VGVALDLPP_ 0 0 0 ENST00000567636.1_1_18:30092208-30092496:+|nuORF ENST00000567636.1_1_18:30092208-30092496:+|nuORF ENST00000567636.1_1_18:30092208-30092496:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.7621765136719 2 440.760561 879.506569 NaN NaN NaN NaN NaN NaN NaN 57.188 1 57.122 56.622 57.622 -0.066036 0 0 0 0.84369 1 31125 31125 2.3027 0 1 69772 15440 46571 47594 81309 81309 0.06199570528565346 VGVASGHL 8 Unmodified _VGVASGHL_ 0 0 0 ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY ENSG00000119411|ENST00000374183|BSPRY MSMS AL20221201_MKP_PDAC_01 4 370.211181640625 2 370.208495 738.402438 NaN NaN NaN NaN NaN NaN NaN 27.578 1 24.541 24.041 25.041 -3.0365 0 0 0 0.9249 1 15292 15292 15.768 0 1 69773 3434 46572 47595 81310 81310 0.022772884917003466 VGVAVQKRPSR 11 Unmodified _VGVAVQKRPSR_ 0 0 0 REV__ENST00000463639.1_1_6:32946038-32946125:+|nuORF REV__ENST00000463639.1_1_6:32946038-32946125:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.5793151855469 3 399.578923 1195.71494 -0.033723 -1.3475E-05 -0.41266 -0.00016489 -0.44638 -0.00017836 399.5788728364552 21.426 0.23112 21.44 21.315 21.546 0.013796 115 37 4 0 0 0 0.70069 1 10909 10909 1.9275 0.59786 1 29360000 + 69774 27355 46573 47596 81311 81311 0.12490992165498938 VGVCITAA 8 Unmodified _VGVCITAA_ 0 0 0 nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4;nc|ENSG00000156920|Q8IZF6-2|ADGRG4 nc|ENSG00000156920|Q8IZF6-3|ADGRG4 nc|ENSG00000156920|Q8IZF6-3|ADGRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1990051269531 2 367.199282 732.384011 0.23875 8.7669E-05 -0.088528 -3.2507E-05 0.15022 5.5162E-05 367.19914296010086 48.641 0.29769 48.598 48.455 48.753 -0.04369 38 14 4 0 0 0 0.80975 1 26213 26213 0.79363 0 1 8810800 69775 6488 46574 47597 81312 81312 0.007114105254800052 VGVCNFWH 8 Unmodified _VGVCNFWH_ 0 0 0 REV__ENST00000317702.9_1_18:12326215-12326377:+|nuORF REV__ENST00000317702.9_1_18:12326215-12326377:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2214660644531 2 481.22108 960.427607 NaN NaN NaN NaN NaN NaN NaN 18.705 1 18.705 18.205 19.205 0 0 0 0 0.97444 1 9318 9318 0.79363 0 1 + 69776 25480 46575 47598 81313 81313 -0.05418979977378058 VGVDCSSVLS 10 Unmodified _VGVDCSSVLS_ 0 0 0 ENST00000306357.8_1_17:9479177-9479330:-|nuORF ENST00000306357.8_1_17:9479177-9479330:-|nuORF ENST00000306357.8_1_17:9479177-9479330:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 965.4566040039062 1 965.460823 964.453547 0.061851 5.9715E-05 -2.8903 -0.0027904 -2.8284 -0.0027307 965.4579500047518 61.895 0.24537 61.895 61.798 62.044 0 20 10 2 0 0 0 0.67033 1 34596 34596 6.2058 0 1 1447600 69777 11627 46576 47599 81314 81314 -0.030101753164103684 VGVDSSLTDTR 11 Unmodified _VGVDSSLTDTR_ 0 0 0 nc|ENSG00000137601|Q96PY6-4|NEK1;nc|ENSG00000137601|Q96PY6-2|NEK1;nc|ENSG00000137601|Q96PY6-6|NEK1;nc|ENSG00000137601|Q96PY6|NEK1;ENSG00000137601|ENST00000507142|NEK1 nc|ENSG00000137601|Q96PY6-4|NEK1 nc|ENSG00000137601|Q96PY6-4|NEK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2907104492188 2 575.290942 1148.56733 NaN NaN NaN NaN NaN NaN NaN 16.801 1 16.801 16.301 17.301 0 0 0 0 0.9435 1 8227 8227 0 0 1 69778 4950 46577 47600 81315 81315 -0.0010098894983912032 VGVDYSTT 8 Unmodified _VGVDYSTT_ 0 0 0 ENST00000374232.7_1_9:115626678-115631377:+|nuORF ENST00000374232.7_1_9:115626678-115631377:+|nuORF ENST00000374232.7_1_9:115626678-115631377:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.2138671875 2 421.200533 840.386513 NaN NaN NaN NaN NaN NaN NaN 14.844 1 14.813 14.313 15.313 -0.030868 0 0 0 0.97444 1 7249 7249 0.79363 0 1 69779 12440 46578 47601 81316 81316 -0.040064625358695594 VGVEHGPLFK 10 Unmodified _VGVEHGPLFK_ 0 0 0 REV__ENSG00000174945|ENST00000683327|AMZ1 REV__ENSG00000174945|ENST00000683327|AMZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 361.5382385253906 3 361.537953 1081.59203 NaN NaN NaN NaN NaN NaN NaN 20.199 1 20.227 19.727 20.727 0.028357 0 0 0 0.94014 1 10216 10216 3.3196 0 1 + 69780 22828 46579 47602 81317 81317 0.054497357142281544 VGVEIMEKF 9 Unmodified _VGVEIMEKF_ 0 0 0 ENSG00000137634|ENST00000375478|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 ENSG00000137634|ENST00000375478|NXPE4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2796630859375 2 526.27826 1050.54197 NaN NaN NaN NaN NaN NaN NaN 74.662 1 74.186 73.686 74.686 -0.47588 0 0 0 0.84369 1 40864 40864 2.3027 0 1 69781 4952 46580 47603 81318 81318 0.018718649940637988 VGVETSHLEL 10 Unmodified _VGVETSHLEL_ 0 0 0 nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF nc|ENSG00000145868|Q6PIJ6-3|FBXO38 nc|ENSG00000145868|Q6PIJ6-3|FBXO38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2882080078125 2 542.287671 1082.56079 NaN NaN NaN NaN NaN NaN NaN 36.443 1 36.193 35.693 36.693 -0.2497 0 0 0 0.99091 1 19120 19120 1.6526 0 1 69782 5735 46581 47604 81319 81319 0.02281117889469897 VGVEVPDVEL 10 Unmodified _VGVEVPDVEL_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2844848632812 2 528.284597 1054.55464 0.40569 0.00021432 -0.10128 -5.3505E-05 0.30441 0.00016081 528.2844923977011 83.936 0.84914 83.936 83.315 84.165 0 82 44 4 0 0 0 0.6606 1 46277 46277 7.2892 2.0586 1 5248700 69783 3826 46582 47605 81320 81320 0.029545996579372513 VGVEVSRYPD 10 Unmodified _VGVEVSRYPD_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 374.1931762695312 3 374.192623 1119.55604 NaN NaN NaN NaN NaN NaN NaN 16.761 1 14.204 13.704 14.704 -2.557 0 0 0 0.92825 1 8707 8707 3.5871 0 1 69784 778 46583 47606 81321 81321 0.0010423374671972852 VGVFLDYEGGT 11 Unmodified _VGVFLDYEGGT_ 0 0 0 nc|ENSG00000168903|Q6UXE8-2|BTNL3;ENSG00000168903|ENST00000342868|BTNL3 nc|ENSG00000168903|Q6UXE8-2|BTNL3 nc|ENSG00000168903|Q6UXE8-2|BTNL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.1890258789062 3 386.188878 1155.5448 NaN NaN NaN NaN NaN NaN NaN 20.714 1 20.742 20.242 21.242 0.028357 0 0 0 0.94165 1 10491 10491 0.45452 0 1 69785 7811 46584 47607 81322 81322 -0.02674588347417739 VGVFQHGKVE 10 Unmodified _VGVFQHGKVE_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000397642.3_1_1:247393292-247393445:+|nuORF;ENST00000443628.2_1_X:114011229-114011283:-|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2017822265625 3 367.201341 1098.58219 NaN NaN NaN NaN NaN NaN NaN 17.031 1 17.036 16.536 17.536 0.0050564 0 0 0 0.98914 1 8571 8571 0.77653 0 1 69786 10277;2688 46585 47608 81323 81323 0.03684547708849095 VGVGAHGR 8 Unmodified _VGVGAHGR_ 0 0 0 ENST00000529864.1_1_8:145694018-145694201:+|nuORF ENST00000529864.1_1_8:145694018-145694201:+|nuORF ENST00000529864.1_1_8:145694018-145694201:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.7119750976562 2 376.711737 751.40892 NaN NaN NaN NaN NaN NaN NaN 18.7 1 18.723 18.223 19.223 0.023106 0 0 0 0.97444 1 9395 9395 0.79363 0 1 69787 14881 46586 47609 81324 81324 0.023272264430943324 VGVGATPEI 9 Unmodified _VGVGATPEI_ 0 0 0 REV__ENSG00000167720|ENST00000344595|SRR REV__ENSG00000167720|ENST00000344595|SRR MSMS AL20221201_MKP_PDAC_01 4 421.73583984375 2 421.734543 841.454533 NaN NaN NaN NaN NaN NaN NaN 34.244 1 30.258 29.758 30.758 -3.9853 0 0 0 0.36554 1 19725 19725 21.747 1.293 1 + 69788 22248 46587 47610 81325 81325 0.027464071148074254 VGVGEVNI 8 Unmodified _VGVGEVNI_ 0 0 0 REV__ENSG00000138071|ENST00000260641|ACTR2 REV__ENSG00000138071|ENST00000260641|ACTR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.7221374511719 2 393.721436 785.428318 NaN NaN NaN NaN NaN NaN NaN 32.038 1 32.068 31.568 32.568 0.030106 0 0 0 0.97444 1 16809 16809 2.8892 0 1 + 69789 20297 46588 47611 81326 81326 0.027021379433335824 VGVGFYGNS 9 Unmodified _VGVGFYGNS_ 0 0 0 ENSG00000141540|ENST00000269346|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 ENSG00000141540|ENST00000269346|TTYH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.216552734375 2 450.216517 898.418482 NaN NaN NaN NaN NaN NaN NaN 20.701 1 20.701 20.201 21.201 0 0 0 0 0.84737 1 10429 10429 1.8442 1.0506 1 69790 5347 46589 47612 81327 81327 -0.034790500620488274 VGVGGSGG 8 Unmodified _VGVGGSGG_ 0 0 0 ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2960205078125 1 589.294016 588.28674 0.67062 0.00039519 1.8243 0.0010751 2.4949 0.0014703 589.2959860827478 73.756 0.29329 73.28 73.118 73.412 -0.47588 21 13 2 0 0 0 0.80975 1 40428 40428 0.79363 0 1 1565600 69791 12797 46590 47613 81328 81328 -0.02387235359128681 VGVGGSGG 8 Unmodified _VGVGGSGG_ 0 0 0 ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF ENST00000396504.6_1_22:41923998-41924697:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 589.294016 588.28674 0.24895 0.00014671 3.8574 0.0022732 4.1064 0.0024199 589.2967063878089 73.202 0.44795 73.244 73.068 73.516 0.041733 -0.018047 0.0002335 NaN 0.79363 32 20 2 NaN NaN NaN NaN 0 NaN NaN 0 13681000 69792 12797 46590 47613 -0.02387235359128681 VGVGIRNRP 9 Unmodified _VGVGIRNRP_ 0 0 0 REV__ENSG00000079999|ENST00000171111|KEAP1 REV__ENSG00000079999|ENST00000171111|KEAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.29443359375 2 484.293425 966.572297 0.25773 0.00012481 -0.19699 -9.5402E-05 0.060734 2.9413E-05 484.2934031995176 20.416 0.1593 20.426 20.308 20.468 0.010553 14 9 2 0 0 0 0.58865 1 10393 10393 2.0598 0 1 721950 + 69793 17658 46591 47614 81329 81329 0.08767404494130915 VGVGQRRA 8 Unmodified _VGVGQRRA_ 0 0 0 REV__ENST00000586353.5_1_19:37464260-37464449:+|nuORF REV__ENST00000586353.5_1_19:37464260-37464449:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.7515869140625 2 421.751393 841.488233 0.11111 4.6862E-05 -0.045521 -1.9199E-05 0.065591 2.7663E-05 421.7513403641596 76.621 0.42534 76.671 76.423 76.848 0.05011 22 17 2 0 0 0 0.80975 1 42299 42299 0.79363 0 1 2198300 + 69794 29110 46592 47615 81330 81330 0.06114873397223164 VGVGRGLL 8 Unmodified _VGVGRGLL_ 0 0 0 ENST00000533683.6_2_19:14198965-14199232:-|nuORF ENST00000533683.6_2_19:14198965-14199232:-|nuORF ENST00000533683.6_2_19:14198965-14199232:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.8963623046875 2 385.747788 769.481023 0.74609 0.0002878 -0.62601 -0.00024148 0.12008 4.6322E-05 385.7475640646968 22.701 0.32064 19.922 19.738 20.058 -2.7784 42 23 2 0 0 0 8.7369 1 12292 12292 14.582 5.2343 1 10893000 69795 14940 46593 47616 81331 81331 0.0870614079680081 VGVGSNIL 8 Unmodified _VGVGSNIL_ 0 0 0 REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF REV__ENST00000560168.1_1_19:46269581-46272089:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.7255249023438 2 379.723978 757.433404 NaN NaN NaN NaN NaN NaN NaN 53.424 1 52.973 52.473 53.473 -0.45173 0 0 0 0.97444 1 28903 28903 2.8892 0 1 + 69796 28825 46594 47617 81332 81332 0.044984418059470954 VGVGWEAR 8 Unmodified _VGVGWEAR_ 0 0 0 REV__ENST00000541898.5_3_19:19144688-19153597:+|nuORF REV__ENST00000541898.5_3_19:19144688-19153597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2325439453125 2 437.232502 872.450451 0.54281 0.00023734 1.3438 0.00058756 1.8866 0.0008249 437.23296996599 48.426 0.43502 48.383 48.239 48.674 -0.04369 38 21 2 0 0 0 0.80624 1 26239 26239 2.8892 0 1 2726000 + 69797 28606 46595 47618 81333 81333 0.009123624117592044 VGVHAPLMNI 10 Unmodified _VGVHAPLMNI_ 0 0 0 ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 ENSG00000139218|ENST00000369367|SCAF11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.86376953125 3 350.863672 1049.56919 -0.21988 -7.7146E-05 -0.56975 -0.0001999 -0.78962 -0.00027705 350.8636705766385 32.593 0.22811 32.623 32.492 32.721 0.029743 17 8 3 0 0 0 0.5905 1 17116 17116 6.6304 0 1 3184200 69798 5139 46596 47619 81334 81334 0.04638393325103607 VGVICVAA 8 Unmodified _VGVICVAA_ 0 0 0 nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4 nc|ENSG00000164707|Q9UKG4|SLC13A4 nc|ENSG00000164707|Q9UKG4|SLC13A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2092895507812 2 366.20965 730.404746 NaN NaN NaN NaN NaN NaN NaN 2.2496 1 2.2325 1.7325 2.7325 -0.017019 0 0 0 0.97444 1 1148 1148 0.79363 0 1 69799 7232 46597 47620 81335 81335 0.02876000905143883 VGVICVAA 8 Unmodified _VGVICVAA_ 0 0 0 nc|ENSG00000164707|Q9UKG4|SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4 nc|ENSG00000164707|Q9UKG4|SLC13A4 nc|ENSG00000164707|Q9UKG4|SLC13A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2086791992188 2 366.20965 730.404746 NaN NaN NaN NaN NaN NaN NaN 2.8314 1 2.8191 2.3191 3.3191 -0.012334 0 0 0 0.97444 1 1437 1437 0.79363 0 1 69800 7232 46597 47620 81336 81336 0.02876000905143883 VGVIPNLI 8 Unmodified _VGVIPNLI_ 0 0 0 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.7671203613281 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 37.91 1 37.91 37.41 38.41 0 0 0 0 0.97444 1 20211 20211 0.79363 0 1 69801 4550 46598 47621 81337 81337 0.09792178253815109 VGVIPNLI 8 Unmodified _VGVIPNLI_ 0 0 0 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7674865722656 2 412.765646 823.516739 -0.30555 -0.00012612 2.3438 0.00096743 2.0382 0.00084131 412.76757065451756 37.404 0.29307 37.425 37.263 37.556 0.021545 19 13 2 0 0 0 0.80975 1 19828 19828 0.79363 0 1 1436900 69802 4550 46598 47621 81338 81338 0.09792178253815109 VGVIPNLI 8 Unmodified _VGVIPNLI_ 0 0 0 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.76708984375 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 30.203 1 30.233 29.733 30.733 0.030106 0 0 0 0.97444 1 15787 15787 0.79363 0 1 69803 4550 46598 47621 81339 81339 0.09792178253815109 VGVIPNLI 8 Unmodified _VGVIPNLI_ 0 0 0 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 ENSG00000134007|ENST00000256389|ADAM20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7672119140625 2 412.765646 823.516739 NaN NaN NaN NaN NaN NaN NaN 33.789 1 33.818 33.318 34.318 0.028934 0 0 0 0.97444 1 17789 17789 0.79363 0 1 69804 4550 46598 47621 81340 81340 0.09792178253815109 VGVISILFLLV 11 Unmodified _VGVISILFLLV_ 0 0 0 ENSG00000187037|ENST00000334425|GPR141 ENSG00000187037|ENST00000334425|GPR141 ENSG00000187037|ENST00000334425|GPR141 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8856811523438 2 586.886293 1171.75803 NaN NaN NaN NaN NaN NaN NaN 16.222 1 16.227 15.727 16.727 0.0050564 0 0 0 0.94301 1 8124 8124 0.35063 0 1 69805 9529 46599 47622 81341 81341 0.1790236917022412 VGVKRGTS 8 Unmodified _VGVKRGTS_ 0 0 0 REV__ENSG00000196700|ENST00000369888|ZNF512B REV__ENSG00000196700|ENST00000369888|ZNF512B MSMS AL20221201_MKP_PDAC_01 4 401.8125 2 402.240327 802.466101 NaN NaN NaN NaN NaN NaN NaN 16.077 1 13.52 13.02 14.02 -2.557 0 0 0 0.83301 1 8303 8303 21.747 1.293 1 + 69806 23861 46600 47623 81342 81342 0.05696648928801551 VGVLAMAF 8 Unmodified _VGVLAMAF_ 0 0 0 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 ENSG00000181773|ENST00000374024|GPR3 MSMS AL20221201_MKP_PDAC_01 4 404.22509765625 2 404.2253 806.436046 NaN NaN NaN NaN NaN NaN NaN 3.832 1 1.35 0.85003 1.85 -2.482 0 0 0 0.97444 1 1944 1944 2.8892 0 1 69807 8994 46601 47624 81343 81343 0.025085739392579853 VGVLENRAR 9 Unmodified _VGVLENRAR_ 0 0 0 ENST00000366774.3_1_6:170151529-170151580:-|nuORF ENST00000366774.3_1_6:170151529-170151580:-|nuORF ENST00000366774.3_1_6:170151529-170151580:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2955627441406 2 507.296165 1012.57778 NaN NaN NaN NaN NaN NaN NaN 21.607 1 21.62 21.12 22.12 0.013796 0 0 0 0.84564 1 11075 11075 2.0598 0.21551 1 69808 12209 46602 47625 81344 81344 0.07199083285945562 VGVLLKQLVPL 11 Unmodified _VGVLLKQLVPL_ 0 0 0 ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY ENSG00000073910|ENST00000542859|FRY MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1179.294555664062 1 1178.78711 1177.77983 0.7903 0.0009316 2.3843 0.0028106 3.1746 0.0037422 1178.7927539175976 68.588 0.29185 62.412 62.32 62.612 -6.1757 24 16 2 0 0 0 0.30598 1 44793 44793 0.35063 0.35063 1 13124000 69809 1116 46603 47626 81345 81345 0.1980517391880312 VGVLLWWEP 9 Unmodified _VGVLLWWEP_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8393859863281 3 366.870932 1097.59097 -0.60289 -0.00022118 -0.023218 -8.5179E-06 -0.62611 -0.0002297 366.87086814531193 15.841 0.090313 15.841 15.826 15.916 0 32 21 2 0 0 0 0.21889 1 7669 7669 0.26902 0 1 607580 69810 9806 46604 47627 81346 81346 0.04607521345337773 VGVNKDEGTAF 11 Unmodified _VGVNKDEGTAF_ 0 0 0 ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5232543945312 3 379.524261 1135.55095 1.4092 0.00053483 -2.3538 -0.00089333 -0.94461 -0.0003585 379.5232529495692 19.254 0.17591 16.597 16.484 16.66 -2.6564 20 12 2 0 0 0 0.65108 1 10142 10142 7.0371 0 1 3147700 69811 3023 46605 47628 81347 81347 -0.011400701159118398 VGVNLFYFCI 10 Unmodified _VGVNLFYFCI_ 0 0 0 ENSG00000109066|ENST00000335464|TMEM104;nc|ENSG00000109066|Q8NE00-2|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2053527832031 3 392.203694 1173.58925 NaN NaN NaN NaN NaN NaN NaN 17.963 1 17.969 17.469 18.469 0.0060463 0 0 0 0.97302 1 9084 9084 1.7423 0.089654 1 69812 2626 46606 47629 81348 81348 0.009401442650641911 VGVPEHTYR 9 Unmodified _VGVPEHTYR_ 0 0 0 ENST00000584021.1_1_11:119290746-119291154:-|nuORF;ENST00000527590.5_1_11:119290120-119293859:-|nuORF;ENSG00000154096|ENST00000284240|THY1 ENST00000584021.1_1_11:119290746-119291154:-|nuORF ENST00000584021.1_1_11:119290746-119291154:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1847534179688 3 353.185691 1056.53524 NaN NaN NaN NaN NaN NaN NaN 19.327 1 19.327 18.827 19.827 0 0 0 0 0.84369 1 9659 9659 1.1933 0 1 69813 6294 46607 47630 81349 81349 0.009236881576953238 VGVPVETV 8 Unmodified _VGVPVETV_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 400.2333984375 2 400.231636 798.448719 NaN NaN NaN NaN NaN NaN NaN 14.849 1 12.321 11.821 12.821 -2.5273 0 0 0 0.97444 1 7571 7571 2.5775 0 1 69814 6400 46608 47631 81350 81350 0.041433086031474886 VGVQLIIKKL 10 Unmodified _VGVQLIIKKL_ 0 0 0 REV__ENSG00000158486|ENST00000698260|DNAH3 REV__ENSG00000158486|ENST00000698260|DNAH3 MSMS AL20221201_MKP_PDAC_01 4 555.885009765625 2 555.884084 1109.75362 NaN NaN NaN NaN NaN NaN NaN 15.706 1 13.178 12.678 13.678 -2.5273 0 0 0 1.0019 1 8082 8082 0.45834 0 1 + 69815 21434 46609 47632 81351 81351 0.2031290474733396 VGVQMRFQQ 9 Unmodified _VGVQMRFQQ_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.8592529296875 3 364.858809 1091.5546 0.62615 0.00022846 -0.34092 -0.00012439 0.28523 0.00010407 364.8587411274534 29.695 0.16369 29.614 29.46 29.624 -0.080429 9 6 2 0 0 0 0.5029 1 15359 15359 7.609 4.0219 1 4714900 69816 6912 46610 47633 81352 81352 0.012483211769676927 VGVQMRFQQ 9 Unmodified _VGVQMRFQQ_ 0 0 0 nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENSG00000162777|ENST00000357640|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D nc|ENSG00000162777|Q9H6A0-2|DENND2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.1930541992188 3 364.858809 1091.5546 -0.033043 -1.2056E-05 0.4621 0.0001686 0.42906 0.00015655 365.1931906796386 29.419 0.24809 29.449 29.341 29.589 0.030106 17 12 2 0 0 0 0.5029 1 15353 15353 4.5289 0.94181 1 4953500 69817 6912 46610 47633 81353 81353 0.012483211769676927 VGVRDQFR 8 Unmodified _VGVRDQFR_ 0 0 0 ENST00000502781.5_1_4:147097182-147097332:+|nuORF ENST00000502781.5_1_4:147097182-147097332:+|nuORF ENST00000502781.5_1_4:147097182-147097332:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.7706909179688 2 488.769783 975.525013 1.1306 0.00055259 0.93499 0.00045699 2.0656 0.0010096 488.77007105260986 20.478 0.23576 17.785 17.685 17.921 -2.693 17 11 2 0 0 0 0.79669 1 10912 10912 8.5933 0.68312 1 1561700 69818 14460 46611 47634 81354 81354 0.03627125223135863 VGVRFYQW 8 Unmodified _VGVRFYQW_ 0 0 0 REV__nc|ENSG00000065923|Q96T83|SLC9A7 REV__nc|ENSG00000065923|Q96T83|SLC9A7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.1867980957031 3 352.187143 1053.5396 NaN NaN NaN NaN NaN NaN NaN 18.553 1 18.576 18.076 19.076 0.023106 0 0 0 0.97444 1 9310 9310 0.45834 0 1 + 69819 17391 46612 47635 81355 81355 0.014971973712817999 VGVRGGHA 8 Unmodified _VGVRGGHA_ 0 0 0 REV__ENST00000413756.5_1_7:56142364-56145823:+|nuORF REV__ENST00000413756.5_1_7:56142364-56145823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.7117309570312 2 376.711737 751.40892 0.065827 2.4798E-05 -0.53935 -0.00020318 -0.47352 -0.00017838 376.7113184994804 18.732 0.14337 18.738 18.658 18.802 0.0060463 13 6 3 0 0 0 0.80143 1 9511 9511 5.7604 0 1 2063300 + 69820 26741 46613 47636 81356 81356 0.023272264430829637 VGVRGRLSRV 10 Unmodified _VGVRGRLSRV_ 0 0 0 ENST00000599736.5_1_19:4342437-4342713:-|nuORF ENST00000599736.5_1_19:4342437-4342713:-|nuORF ENST00000599736.5_1_19:4342437-4342713:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.5458068847656 3 366.899996 1097.67816 1.5136 0.00055535 1.0538 0.00038663 2.5674 0.00094198 366.90061166106324 22.042 0.22252 19.307 19.19 19.412 -2.7348 27 12 3 0 0 0 0.23767 1 11865 11865 1.7423 0 1 2611000 69821 15794 46614 47637 81357 81357 0.1332274033959493 VGVRIAKS 8 Unmodified _VGVRIAKS_ 0 0 0 REV__nc|ENSG00000163938|Q9BVP2-2|GNL3 REV__nc|ENSG00000163938|Q9BVP2-2|GNL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 414.9336547851562 2 415.266345 828.518136 0.40443 0.00016795 0.37847 0.00015716 0.78289 0.00032511 415.26647953934383 16.105 0.18006 13.548 13.486 13.666 -2.557 56 32 2 0 0 0 8.7369 1 8301 8301 10.824 0 1 3936800 + 69822 21837 46615 47638 81358 81358 0.09701812342564153 VGVRRGQVI 9 Unmodified _VGVRRGQVI_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MSMS AL20221201_MKP_PDAC_01 4 492.3085327148438 2 492.309075 982.603597 NaN NaN NaN NaN NaN NaN NaN 29.153 1 25.851 25.351 26.351 -3.3016 0 0 0 0.20498 1 16341 16341 30.225 3.8835 1 + 69823 29517 46616 47639 81359 81359 0.11159977528222953 VGVSCVVPSL 10 Unmodified _VGVSCVVPSL_ 0 0 0 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2647094726562 2 480.265153 958.515753 -0.13836 -6.645E-05 -2.0542 -0.00098654 -2.1925 -0.001053 480.26424822471836 33.377 0.29434 33.218 33.028 33.323 -0.15918 20 11 2 0 0 0 0.27276 1 17394 17394 29.082 2.8134 1 1882200 69824 9656 46617 47640 81360 81360 0.03483595822592633 VGVSFRLEPR 10 Unmodified _VGVSFRLEPR_ 0 0 0 REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2254028320312 3 387.224257 1158.65094 NaN NaN NaN NaN NaN NaN NaN 44.312 1 44.29 43.79 44.79 -0.022064 0 0 0 0.99091 1 23773 23773 0.69767 0.1345 1 + 69825 26057 46618 47641 81361 81361 0.07796212008565817 VGVSGSGGGF 10 Unmodified _VGVSGSGGGF_ 0 0 0 ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z ENSG00000159202|ENST00000360943|UBE2Z MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.20068359375 2 412.200867 822.387182 NaN NaN NaN NaN NaN NaN NaN 15.865 1 15.851 15.351 16.351 -0.014067 0 0 0 0.98914 1 7806 7806 1.8442 1.0506 1 69826 6634 46619 47642 81362 81362 -0.031116230961288238 VGVSGSTI 8 Unmodified _VGVSGSTI_ 0 0 0 REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant REV__STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 360.2007751464844 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 24.759 1 21.876 21.376 22.376 -2.8831 0 0 0 0.97348 1 13500 13500 5.7604 0 1 + 69827 20128 46620 47643 81363 81363 0.015661625349594033 VGVSINLG 8 Unmodified _VGVSINLG_ 0 0 0 REV__ENSG00000131941|ENST00000254260|RHPN2 REV__ENSG00000131941|ENST00000254260|RHPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.7250366210938 2 379.723978 757.433404 NaN NaN NaN NaN NaN NaN NaN 49.325 1 49.281 48.781 49.781 -0.04369 0 0 0 0.97444 1 26645 26645 2.5775 0 1 + 69828 19819 46621 47644 81364 81364 0.04498441805958464 VGVSKLFL 8 Unmodified _VGVSKLFL_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.7736511230469 2 431.773471 861.53239 1.0714 0.0004626 1.8415 0.00079513 2.9129 0.0012577 431.77343083394345 91.363 0.84742 85.187 85.042 85.89 -6.1757 63 47 2 0 0 0 0.80624 1 60656 60656 2.8892 0 1 7815900 69829 1590 46622 47645 81365 81365 0.09608464770849423 VGVSSRRTF 9 Unmodified _VGVSSRRTF_ 0 0 0 REV__ENSG00000187961|ENST00000338591|KLHL17 REV__ENSG00000187961|ENST00000338591|KLHL17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7830505371094 2 504.78289 1007.55123 -0.018878 -9.5293E-06 0.42656 0.00021532 0.40768 0.00020579 504.78312382754063 29.073 0.15901 29.073 28.963 29.122 0 10 7 2 0 0 0 0.39863 1 15067 15067 12.532 0 1 1164200 + 69830 23677 46623 47646 81366 81366 0.0477539439461907 VGVSSRRTF 9 Unmodified _VGVSSRRTF_ 0 0 0 REV__ENSG00000187961|ENST00000338591|KLHL17 REV__ENSG00000187961|ENST00000338591|KLHL17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 504.78289 1007.55123 -0.018878 -9.5293E-06 0.42656 0.00021532 0.40768 0.00020579 504.78312382754063 29.073 0.15901 29.073 28.963 29.122 0 0.051315 0.00016109 NaN 12.532 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1164200 + 69831 23677 46623 47646 0.0477539439461907 VGVSTLSL 8 Unmodified _VGVSTLSL_ 0 0 0 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.2310485839844 2 388.231636 774.448719 NaN NaN NaN NaN NaN NaN NaN 27.242 1 27.271 26.771 27.771 0.028664 0 0 0 0.97444 1 14154 14154 0.79363 0 1 69832 434 46624 47647 81367 81367 0.052473086031341154 VGVSTPPLI 9 Unmodified _VGVSTPPLI_ 0 0 0 ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF ENST00000469195.5_3_6:35254110-35258154:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7698974609375 2 441.768386 881.522219 1.1476 0.00050696 3.6811 0.0016262 4.8286 0.0021331 441.76933484982146 65.799 0.50529 65.808 65.487 65.993 0.0095596 56 24 4 0 0 0 0.61256 1 36155 36155 0.6015 0 1 10990000 69833 13827 46625 47648 81368 81368 0.07671857045625075 VGVSVSAT 8 Unmodified _VGVSVSAT_ 0 0 0 REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 REV__nc|ENSG00000239389|Q9Y5I0-2|PCDHA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2017211914062 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 21.845 1 21.845 21.345 22.345 0 0 0 0 0.97444 1 11085 11085 5.2307 0 1 + 69834 24439 46626 47649 81369 81369 0.015661625349594033 VGVTGHVPLLE 11 Unmodified _VGVTGHVPLLE_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2174987792969 3 374.21688 1119.62881 NaN NaN NaN NaN NaN NaN NaN 16.683 1 16.688 16.188 17.188 0.0050564 0 0 0 0.94165 1 8377 8377 0.45452 0.046251 1 69835 1664 46627 47650 81370 81370 0.07377987540144204 VGVTGHVPLLE 11 Unmodified _VGVTGHVPLLE_ 0 0 0 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 ENSG00000095951|ENST00000379388|HIVEP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2173767089844 3 374.21688 1119.62881 NaN NaN NaN NaN NaN NaN NaN 19.6 1 19.608 19.108 20.108 0.0078487 0 0 0 0.94165 1 9975 9975 0.45452 0 1 69836 1664 46627 47650 81371 81371 0.07377987540144204 VGVTKCHIL 9 Unmodified _VGVTKCHIL_ 0 0 0 REV__ENST00000398900.2_1_3:170371678-170371921:-|nuORF REV__ENST00000398900.2_1_3:170371678-170371921:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2806091308594 2 485.281137 968.547722 0.065399 3.1737E-05 -1.0452 -0.0005072 -0.97978 -0.00047547 485.2803629288604 32.165 0.2084 32.036 31.94 32.149 -0.12915 12 7 3 0 0 0 0.53666 1 16778 16778 5.2307 2.3415 1 699790 + 69837 26574 46628 47651 81372 81372 0.0621900829637525 VGVTQPNS 8 Unmodified _VGVTQPNS_ 0 0 0 REV__nc|ENSG00000112335|O60493-3|SNX3 REV__nc|ENSG00000112335|O60493-3|SNX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.2072143554688 2 401.208692 800.402832 NaN NaN NaN NaN NaN NaN NaN 18.477 1 18.5 18 19 0.023106 0 0 0 0.97444 1 9268 9268 0.79363 0 1 + 69838 18812 46629 47652 81373 81373 -0.005353365791052056 VGVTRPFA 8 Unmodified _VGVTRPFA_ 0 0 0 REV__ENST00000339728.5_1_2:235404101-235404395:-|nuORF REV__ENST00000339728.5_1_2:235404101-235404395:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.7464599609375 2 423.745245 845.475937 1.4562 0.00061708 0.52827 0.00022385 1.9845 0.00084093 423.7452871149861 47.872 0.54212 42.638 42.279 42.821 -5.2339 68 32 3 0 0 0 0.63229 1 29612 29612 23.148 2.2772 1 32058000 + 69839 25684 46630 47653 81374 81374 0.047018369341685684 VGVTTWNGLLY 11 Unmodified _VGVTTWNGLLY_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8278198242188 2 611.826963 1221.63937 0.62903 0.00038486 0.12072 7.386E-05 0.74975 0.00045872 611.8270192869039 67.621 0.26819 67.139 67.031 67.299 -0.48218 21 11 2 0 0 0 0.61059 1 36962 36962 10.8 2.644 1 1518100 69840 2675 46631 47654 81375 81375 0.03741970194573696 VGVVAPSL 8 Unmodified _VGVVAPSL_ 0 0 0 ENST00000510769.5_2_3:130745736-130748474:+|nuORF ENST00000510769.5_2_3:130745736-130748474:+|nuORF ENST00000510769.5_2_3:130745736-130748474:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2279663085938 2 371.228897 740.44324 NaN NaN NaN NaN NaN NaN NaN 38.137 1 38.154 37.654 38.654 0.01704 0 0 0 0.97444 1 20272 20272 0.79363 0 1 69841 14595 46632 47655 81376 81376 0.06263629811314786 VGVVAVHI 8 Unmodified _VGVVAVHI_ 0 0 0 ENSG00000006116|ENST00000005284|CACNG3 ENSG00000006116|ENST00000005284|CACNG3 ENSG00000006116|ENST00000005284|CACNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2500610351562 2 397.250163 792.485774 -0.45733 -0.00018167 0.62754 0.00024929 0.17021 6.7617E-05 397.25028946145926 36.085 0.30049 35.835 35.703 36.004 -0.2497 24 13 2 0 0 0 0.76859 1 18902 18902 11.114 0 1 10853000 69842 327 46633 47656 81377 81377 0.08123024939561674 VGVVEVSG 8 Unmodified _VGVVEVSG_ 0 0 0 REV__ENST00000315758.9_1_7:75677396-75684155:+|nuORF REV__ENST00000315758.9_1_7:75677396-75684155:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.2093505859375 2 373.208161 744.401769 NaN NaN NaN NaN NaN NaN NaN 58.419 1 58.358 57.858 58.858 -0.060719 0 0 0 0.97444 1 31815 31815 0.79363 0 1 + 69843 25464 46634 47657 81378 81378 0.01934449052009768 VGVVPRSLYI 10 Unmodified _VGVVPRSLYI_ 0 0 0 REV__ENST00000467658.1_1_22:40696928-40697447:+|nuORF REV__ENST00000467658.1_1_22:40696928-40697447:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.0555419921875 3 368.225486 1101.65463 0.85479 0.00031475 -0.018515 -6.8178E-06 0.83627 0.00030794 368.22573125577986 49.673 0.33239 49.624 49.431 49.763 -0.048824 32 16 3 0 0 0 0.23981 1 26908 26908 0.77653 0 1 4775300 + 69844 27438 46635 47658 81379 81379 0.10786881782405544 VGVVQGGL 8 Unmodified _VGVVQGGL_ 0 0 0 REV__ENST00000382348.1_2_21:34443943-34444072:+|nuORF REV__ENST00000382348.1_2_21:34443943-34444072:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.719970703125 2 364.718696 727.422839 NaN NaN NaN NaN NaN NaN NaN 32.525 1 28.669 28.169 29.169 -3.8562 0 0 0 0.97444 1 18554 18554 0.79363 0 1 + 69845 26347 46636 47659 81380 81380 0.04822459151534986 VGVVTGST 8 Unmodified _VGVVTGST_ 0 0 0 REV__ATP9A|p.A265T|1|0.08|ENSG00000054793|chr20:51689070-51689070|C/T|missense_variant REV__ATP9A|p.A265T|1|0.08|ENSG00000054793|chr20:51689070-51689070|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.2019958496094 2 360.200336 718.386119 NaN NaN NaN NaN NaN NaN NaN 22.138 1 22.138 21.638 22.638 0 0 0 0 0.97444 1 11250 11250 2.5775 0 1 + 69846 16737 46637 47660 81381 81381 0.015661625349594033 VGVWLNWG 8 Unmodified _VGVWLNWG_ 0 0 0 REV__ENST00000493894.1_1_22:29661211-29661415:-|nuORF REV__ENST00000493894.1_1_22:29661211-29661415:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.4835205078125 1 930.483214 929.475937 0.3039 0.00028277 -0.31019 -0.00028863 -0.0062938 -5.8563E-06 930.4827464862807 97.713 0.7915 97.471 97.099 97.89 -0.24277 92 35 3 0 0 0 0.80975 1 53516 53516 0.79363 0 1 34081000 + 69847 27929 46638 47661 81382 81382 0.008378369341698999 VGVYLVDRTTL 11 Unmodified _VGVYLVDRTTL_ 0 0 0 REV__ENSG00000109927|ENST00000392793|TECTA REV__ENSG00000109927|ENST00000392793|TECTA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5721740722656 3 412.571322 1234.69214 -0.17705 -7.3047E-05 1.2611 0.0005203 1.0841 0.00044726 412.57200895605365 29.726 0.33768 29.756 29.632 29.97 0.030106 27 13 4 0 0 0 0.65096 1 15516 15516 8.7518 0.90574 1 6107000 + 69848 18678 46639 47662 81383 81383 0.08417928257358653 VGVYMHFLYC 10 Unmodified _VGVYMHFLYC_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.1938171386719 3 411.192801 1230.55657 -0.54492 -0.00022407 1.1565 0.00047555 0.61159 0.00025148 411.1931733168471 16.041 0.089088 16.027 16.002 16.091 -0.014067 40 33 2 0 0 0 0.72196 1 7897 7897 0.15932 0.01943 1 379180 + 69849 23805;24073 46640 47663 81384 81384 -0.04948386129422033 VGVYMHFLYC 10 Unmodified _VGVYMHFLYC_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 411.192801 1230.55657 -0.54492 -0.00022407 1.1565 0.00047555 0.61159 0.00025148 411.1931733168471 16.041 0.089088 16.027 16.002 16.091 -0.014067 0.12329 0.00019579 NaN 0.15932 40 33 2 NaN NaN NaN NaN 0 NaN NaN 0 379180 + 69850 23805;24073 46640 47663 -0.04948386129422033 VGVYMHFLYC 10 Unmodified _VGVYMHFLYC_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1;REV__ENSG00000198838|ENST00000634891|RYR3 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.192801 1230.55657 -0.1512 -6.2174E-05 0.8119 0.00033385 0.6607 0.00027167 411.19332504916133 15.776 0.17331 15.781 15.684 15.858 0.0050564 -0.12329 -0.00022932 NaN 0.15932 29 14 3 NaN NaN NaN NaN 0 NaN NaN 0 1761500 + 69851 23805;24073 46640 47663 -0.04948386129422033 VGVYYCMQGI 10 Unmodified _VGVYYCMQGI_ 0 0 0 nc|ENSG00000253998|A2NJV5|IGKV2-29 nc|ENSG00000253998|A2NJV5|IGKV2-29 nc|ENSG00000253998|A2NJV5|IGKV2-29 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1760864257812 3 378.177039 1131.50929 NaN NaN NaN NaN NaN NaN NaN 18.908 1 18.908 18.408 19.408 0 0 0 0 0.98914 1 9429 9429 0.77653 0 1 69852 16584 46641 47664 81385 81385 -0.0512066540043179 VGWAKPLL 8 Unmodified _VGWAKPLL_ 0 0 0 REV__ENSG00000175073|ENST00000310421|VCPIP1 REV__ENSG00000175073|ENST00000310421|VCPIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.27197265625 2 442.273638 882.532724 NaN NaN NaN NaN NaN NaN NaN 53.584 1 53.521 53.021 54.021 -0.063423 0 0 0 0.97444 1 29071 29071 2.5775 0.27475 1 + 69853 22837 46642 47665 81386 81386 0.08675884490708086 VGWARWLTP 9 Unmodified _VGWARWLTP_ 0 0 0 ENST00000564934.1_1_15:41814728-41816034:-|nuORF ENST00000564934.1_1_15:41814728-41816034:-|nuORF ENST00000564934.1_1_15:41814728-41816034:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5347900390625 3 362.534543 1084.5818 -0.21594 -7.8285E-05 0.82738 0.00029995 0.61144 0.00022167 362.534779351603 21.868 0.6739 21.891 21.53 22.204 0.022896 76 33 3 0 0 0 0.61256 1 11255 11255 0.26902 0 1 3212800 69854 15394 46643 47666 81387 81387 0.04289172779635919 VGWASAALLL 10 Unmodified _VGWASAALLL_ 0 0 0 REV__ENSG00000171236|ENST00000306390|LRG1 REV__ENSG00000171236|ENST00000306390|LRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7952575683594 2 500.794935 999.575317 1.1955 0.00059871 -0.93124 -0.00046636 0.26429 0.00013236 500.7948136591373 87.611 0.83408 81.435 80.895 81.729 -6.1757 88 45 3 0 0 0 0.031389 1 57892 57892 67.344 3.1075 1 29568000 + 69855 22548 46644 47667 81388 81388 0.07551234828292763 VGWDERMKL 9 Unmodified _VGWDERMKL_ 0 0 0 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.5284729003906 3 378.530581 1132.56991 NaN NaN NaN NaN NaN NaN NaN 16.665 1 16.666 16.166 17.166 0.0010548 0 0 0 0.85737 1 8232 8232 0.26902 0.033176 1 + 69856 21209 46645 47668 81389 81389 0.008931879741567172 VGWDERMKL 9 Unmodified _VGWDERMKL_ 0 0 0 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8640747070312 3 378.530581 1132.56991 NaN NaN NaN NaN NaN NaN NaN 16.99 1 16.991 16.491 17.491 0.0010548 0 0 0 0.85737 1 8414 8414 0.26902 0.033176 1 + 69857 21209 46645 47668 81390 81390 0.008931879741567172 VGWDTKPI 8 Unmodified _VGWDTKPI_ 0 0 0 REV__nc|ENSG00000038427|P13611-3|VCAN REV__nc|ENSG00000038427|P13611-3|VCAN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.21435546875 2 458.25036 914.486168 NaN NaN NaN NaN NaN NaN NaN 20.576 1 20.576 20.076 21.076 0 0 0 0 0.95607 1 10361 10361 9.3474 0 1 + 69858 17180 46646 47669 81391 81391 0.025503998687554486 VGWEIECRI 9 Unmodified _VGWEIECRI_ 0 0 0 ENST00000254958.9_1_20:10619810-10620026:-|nuORF ENST00000254958.9_1_20:10619810-10620026:-|nuORF ENST00000254958.9_1_20:10619810-10620026:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8568420410156 3 368.855065 1103.54336 0.90806 0.00033494 2.1975 0.00081055 3.1055 0.0011455 368.8562232394672 22.737 0.29432 19.959 19.872 20.166 -2.7784 31 22 2 0 0 0 0.39863 1 12295 12295 8.1555 0 1 4500500 69859 11171 46647 47670 81392 81392 -0.00426500917183148 VGWGAVKM 8 Unmodified _VGWGAVKM_ 0 0 0 ENST00000569673.2_1_15:74043433-74043592:-|nuORF ENST00000569673.2_1_15:74043433-74043592:-|nuORF ENST00000569673.2_1_15:74043433-74043592:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.2281799316406 2 424.228374 846.442194 NaN NaN NaN NaN NaN NaN NaN 20.216 1 20.216 19.716 20.716 0 0 0 0 0.97444 1 10160 10160 0.79363 0 1 69860 15461 46648 47671 81393 81393 0.012830921707745802 VGWGFQYRW 9 Unmodified _VGWGFQYRW_ 0 0 0 REV__ENST00000278671.9_1_11:71808557-71808611:-|nuORF REV__ENST00000278671.9_1_11:71808557-71808611:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.1977233886719 3 400.197931 1197.57196 NaN NaN NaN NaN NaN NaN NaN 14.702 1 12.2 11.7 12.7 -2.5029 0 0 0 0.84369 1 7486 7486 1.1933 0.23107 1 + 69861 25183 46649 47672 81394 81394 -0.01892015225735122 VGWGKQETKF 10 Unmodified _VGWGKQETKF_ 0 0 0 REV__ENSG00000136169|ENST00000611815|SETDB2 REV__ENSG00000136169|ENST00000611815|SETDB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.876708984375 3 393.876746 1178.60841 -0.5014 -0.00019749 0.40161 0.00015819 -0.099785 -3.9303E-05 393.8770077640251 19.208 0.088104 19.232 19.184 19.273 0.023106 6 4 2 0 0 0 0.70951 1 9683 9683 0.77653 0 1 398790 + 69862 20144 46650 47673 81395 81395 0.026248168803022054 VGWGKQETKF 10 Unmodified _VGWGKQETKF_ 0 0 0 REV__ENSG00000136169|ENST00000611815|SETDB2 REV__ENSG00000136169|ENST00000611815|SETDB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 393.876746 1178.60841 -0.5014 -0.00019749 0.40161 0.00015819 -0.099785 -3.9303E-05 393.8770077640251 19.208 0.088104 19.232 19.184 19.273 0.023106 0 0 NaN 0.77653 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 398790 + 69863 20144 46650 47673 0.026248168803022054 VGWGNEQAL 9 Unmodified _VGWGNEQAL_ 0 0 0 REV__nc|ENSG00000111674|P09104-2|ENO2 REV__nc|ENSG00000111674|P09104-2|ENO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.2408447265625 2 487.240524 972.466495 0.040311 1.9641E-05 0.2091 0.00010188 0.24941 0.00012152 487.24072506908766 31.131 0.35369 31.161 30.992 31.346 0.030106 41 14 4 0 0 0 0.46577 1 16372 16372 9.3474 0.75416 1 13920000 + 69864 18766 46651 47674 81396 81396 -0.020839761420006653 VGWGNSTC 8 Unmodified _VGWGNSTC_ 0 0 0 REV__ENSG00000134013|ENST00000389131|LOXL2 REV__ENSG00000134013|ENST00000389131|LOXL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.1724548339844 2 412.173795 822.333038 NaN NaN NaN NaN NaN NaN NaN 21.397 1 21.397 20.897 21.897 0 0 0 0 0.97444 1 10824 10824 0.79363 0 1 + 69865 19947 46652 47675 81397 81397 -0.08523538519364138 VGWGRGGL 8 Unmodified _VGWGRGGL_ 0 0 0 ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2215270996094 2 401.221937 800.429321 0.37004 0.00014847 1.813 0.00072743 2.1831 0.0008759 401.2224343751027 46.548 0.26517 46.548 46.391 46.656 0 19 11 2 0 0 0 0.80676 1 25428 25428 2.5775 0 1 1869900 69866 13945 46653 47676 81398 81398 0.02112397102905561 VGWGRGGL 8 Unmodified _VGWGRGGL_ 0 0 0 ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2221984863281 2 401.221937 800.429321 0.38724 0.00015537 0.77075 0.00030924 1.158 0.00046461 401.22239174978097 47.583 0.26915 47.545 47.411 47.68 -0.038643 24 12 3 0 0 0 0.80676 1 25649 25649 2.5775 0 1 2819900 69867 13945 46653 47676 81399 81399 0.02112397102905561 VGWGRGGL 8 Unmodified _VGWGRGGL_ 0 0 0 ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.4986877441406 2 401.221937 800.429321 0.80692 0.00032375 0.87402 0.00035068 1.6809 0.00067443 401.2222480532328 47.121 0.2669 47.087 46.996 47.263 -0.033421 24 13 2 0 0 0 8.7369 1 25451 25451 0.79363 0 1 12166000 69868 13945 46653 47676 81400 81400 0.02112397102905561 VGWGRGGL 8 Unmodified _VGWGRGGL_ 0 0 0 ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 401.221937 800.429321 0.5408 0.00021698 2.1474 0.0008616 2.6882 0.0010786 401.22318755137604 47.649 0.18605 47.649 47.558 47.745 0 0.051958 0.00087081 NaN 2.5775 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 841950 69869 13945 46653 47676 0.02112397102905561 VGWGRGGL 8 Unmodified _VGWGRGGL_ 0 0 0 ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF ENST00000474986.2_1_11:66055008-66055577:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 401.221937 800.429321 0.85235 0.00034198 1.7685 0.00070956 2.6208 0.0010515 401.22247815148324 46.434 0.30524 46.4 46.267 46.572 -0.033417 -0.07388 -6.7279E-06 NaN 2.5775 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6088400 69870 13945 46653 47676 0.02112397102905561 VGWGRWAPF 9 Unmodified _VGWGRWAPF_ 0 0 0 REV__ENST00000473314.6_1_1:25664285-25664552:-|nuORF REV__ENST00000473314.6_1_1:25664285-25664552:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.2764892578125 2 538.277244 1074.53993 NaN NaN NaN NaN NaN NaN NaN 55.594 1 55.525 55.025 56.025 -0.068737 0 0 0 0.70111 1 30217 30217 9.3474 0.75416 1 + 69871 27537 46654 47677 81401 81401 0.005646170911177251 VGWMVGRG 8 Unmodified _VGWMVGRG_ 0 0 0 REV__ENST00000466525.1_1_12:6646524-6647333:+|nuORF REV__ENST00000466525.1_1_12:6646524-6647333:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 863.4396362304688 1 861.439969 860.432692 0.06919 5.9603E-05 -1.6735 -0.0014416 -1.6043 -0.001382 861.4386277404685 72.252 0.33274 72.252 72.054 72.387 0 29 14 3 0 0 0 0.80975 1 40278 40278 0.79363 0 1 1557800 + 69872 27409 46655 47678 81402 81402 -0.003106761147364523 VGWPLDRH 8 Unmodified _VGWPLDRH_ 0 0 0 nc|ENSG00000171503|Q16134-3|ETFDH;ENSG00000171503|ENST00000511912|ETFDH nc|ENSG00000171503|Q16134-3|ETFDH nc|ENSG00000171503|Q16134-3|ETFDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.5177612304688 1 979.510826 978.503549 -0.13214 -0.00012943 -0.5397 -0.00052865 -0.67184 -0.00065807 979.5098677073812 78.697 0.28841 78.211 78.035 78.323 -0.48596 21 10 3 0 0 0 0.80975 1 43116 43116 0.79363 0 1 1164400 69873 8112 46656 47679 81403 81403 0.013437401944202065 VGWRAGGG 8 Unmodified _VGWRAGGG_ 0 0 0 REV__ENST00000367988.7_1_1:161196159-161196231:+|nuORF REV__ENST00000367988.7_1_1:161196159-161196231:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.19921875 2 380.198462 758.382371 NaN NaN NaN NaN NaN NaN NaN 17.719 1 17.719 17.219 18.219 0 0 0 0 0.97444 1 8754 8754 0.79363 0 1 + 69874 26001 46657 47680 81404 81404 -0.006484624482368417 VGWRAGGG 8 Unmodified _VGWRAGGG_ 0 0 0 REV__ENST00000367988.7_1_1:161196159-161196231:+|nuORF REV__ENST00000367988.7_1_1:161196159-161196231:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.1994323730469 2 380.198462 758.382371 NaN NaN NaN NaN NaN NaN NaN 17.94 1 17.954 17.454 18.454 0.013865 0 0 0 0.97444 1 8958 8958 0.79363 0 1 + 69875 26001 46657 47680 81405 81405 -0.006484624482368417 VGWRGTGS 8 Unmodified _VGWRGTGS_ 0 0 0 ENST00000370406.7_1_X:149106790-149106904:-|nuORF ENST00000370406.7_1_X:149106790-149106904:-|nuORF ENST00000370406.7_1_X:149106790-149106904:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.20849609375 2 410.209027 818.403501 NaN NaN NaN NaN NaN NaN NaN 19.771 1 19.779 19.279 20.279 0.0078487 0 0 0 0.97444 1 10066 10066 2.5775 0 1 69876 12332 46658 47681 81406 81406 -0.01296497139389885 VGWRPVSR 8 Unmodified _VGWRPVSR_ 0 0 0 nc|ENSG00000241878|Q9UG56-2|PISD;ENST00000473770.5_1_22:32017296-32019834:-|nuORF nc|ENSG00000241878|Q9UG56-2|PISD nc|ENSG00000241878|Q9UG56-2|PISD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 957.5475463867188 1 956.54246 955.535184 -0.10817 -0.00010347 -0.59983 -0.00057376 -0.708 -0.00067723 956.5412521241625 79.406 0.24253 79.406 79.303 79.546 0 13 9 2 0 0 0 0.80975 1 44099 44099 0.79363 0 1 614780 69877 16571 46659 47682 81407 81407 0.0556373294837158 VGWRRGLFF 9 Unmodified _VGWRRGLFF_ 0 0 0 REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5116577148438 3 379.882054 1136.62433 -0.362 -0.00013752 -0.34546 -0.00013123 -0.70746 -0.00026875 379.8817227665722 23.771 0.49377 23.771 23.605 24.099 0 48 24 3 0 0 0 0.21404 1 12178 12178 5.2969 1.3525 1 1515600 + 69878 27602 46660 47683 81408 81408 0.06148567907894176 VGWRRGLFF 9 Unmodified _VGWRRGLFF_ 0 0 0 REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF REV__ENST00000476898.1_1_X:56258986-56259160:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.21630859375 3 379.882054 1136.62433 NaN NaN NaN NaN NaN NaN NaN 18.725 1 18.748 18.248 19.248 0.023106 0 0 0 0.85261 1 9409 9409 1.1933 0.12188 1 + 69879 27602 46660 47683 81409 81409 0.06148567907894176 VGWRRSGVW 9 Unmodified _VGWRRSGVW_ 0 0 0 ENST00000604175.5_1_9:90586022-90589430:-|nuORF;ENST00000459720.5_1_9:90585689-90589466:-|nuORF;ENST00000603475.1_1_9:90589229-90589448:-|nuORF ENST00000604175.5_1_9:90586022-90589430:-|nuORF ENST00000604175.5_1_9:90586022-90589430:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.2015686035156 3 368.201675 1101.5832 -0.60487 -0.00022271 -0.1162 -4.2786E-05 -0.72108 -0.0002655 368.2016699145805 15.201 0.18649 15.201 15.088 15.275 0 62 49 2 0 0 0 0.61256 1 7266 7266 0.26902 0 1 665830 69880 13631 46661 47684 81410 81410 0.03646806868414387 VGWSSRRNLDT 11 Unmodified _VGWSSRRNLDT_ 0 0 0 ENST00000490021.2_1_1:110230443-110251195:+|nuORF ENST00000490021.2_1_1:110230443-110251195:+|nuORF ENST00000490021.2_1_1:110230443-110251195:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8887634277344 3 430.889825 1289.64765 NaN NaN NaN NaN NaN NaN NaN 19.215 1 16.558 16.058 17.058 -2.6564 0 0 0 0.93954 1 10161 10161 2.8433 0.4085 1 69881 14251 46662 47685 81411 81411 0.014409171638817497 VGWSWGPA 8 Unmodified _VGWSWGPA_ 0 0 0 REV__ENST00000269321.11_1_17:79826243-79826699:-|nuORF REV__ENST00000269321.11_1_17:79826243-79826699:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2080688476562 2 430.208495 858.402438 NaN NaN NaN NaN NaN NaN NaN 19.31 1 16.654 16.154 17.154 -2.6564 0 0 0 0.97348 1 10218 10218 5.7604 1.0044 1 + 69882 25124 46663 47686 81412 81412 -0.032427115083009994 VGWVCVCVCV 10 Unmodified _VGWVCVCVCV_ 0 0 0 REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.249267578125 2 533.747759 1065.48096 -0.16619 -8.8705E-05 -0.51296 -0.00027379 -0.67915 -0.00036249 533.7472559132776 21.355 0.16822 21.355 21.253 21.421 0 23 20 2 0 0 0 0.23821 1 10770 10770 4.3292 0 1 751670 + 69883 25655 46664 47687 81413 81413 -0.04915686581398404 VGWVTPDYHL 10 Unmodified _VGWVTPDYHL_ 0 0 0 nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000198838|Q15413-2|RYR3 MSMS AL20221201_MKP_PDAC_01 4 396.2030334472656 3 396.201229 1185.58186 NaN NaN NaN NaN NaN NaN NaN 21.437 1 18.702 18.202 19.202 -2.7348 0 0 0 0.91954 1 11479 11479 7.1017 0 1 69884 10169 46665 47688 81414 81414 -0.0035087201099486265 VGWWFFLVC 9 Unmodified _VGWWFFLVC_ 0 0 0 ENST00000393585.6_1_4:185550289-185550421:-|nuORF ENST00000393585.6_1_4:185550289-185550421:-|nuORF ENST00000393585.6_1_4:185550289-185550421:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7863159179688 2 578.786056 1155.55756 NaN NaN NaN NaN NaN NaN NaN 17.299 1 17.304 16.804 17.804 0.0050564 0 0 0 0.85737 1 8720 8720 0.6015 0 1 69885 12707 46666 47689 81415 81415 -0.013998036982229678 VGWWKRLF 8 Unmodified _VGWWKRLF_ 0 0 0 nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;ENST00000524544.1_1_11:80364480-80364744:-|nuORF nc|ENSG00000170540|Q15041-2|ARL6IP1 nc|ENSG00000170540|Q15041-2|ARL6IP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3095703125 2 546.311087 1090.60762 NaN NaN NaN NaN NaN NaN NaN 24.998 1 24.981 24.481 25.481 -0.017006 0 0 0 0.97444 1 12790 12790 0.79363 0 1 69886 8000 46667 47690 81416 81416 0.0659406702193337 VGWWRSCRD 9 Unmodified _VGWWRSCRD_ 0 0 0 ENST00000532317.5_1_11:85742631-85779847:-|nuORF ENST00000532317.5_1_11:85742631-85779847:-|nuORF ENST00000532317.5_1_11:85742631-85779847:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.520263671875 2 582.772 1163.52945 NaN NaN NaN NaN NaN NaN NaN 14.579 1 14.579 14.079 15.079 0 0 0 0 0.85737 1 6942 6942 0.6015 0 1 69887 14926 46668 47691 81417 81417 -0.045777336256378476 VGYAGKGI 8 Unmodified _VGYAGKGI_ 0 0 0 REV__ENST00000573483.1_1_17:3785816-3788993:-|nuORF REV__ENST00000573483.1_1_17:3785816-3788993:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 382.8580932617188 2 382.718696 763.422839 1.835 0.00070229 -1.3256 -0.00050732 0.50944 0.00019497 382.7183973059764 35.906 0.26472 31.713 31.555 31.82 -4.1928 20 16 2 0 0 0 8.7369 1 20901 20901 5.7604 0 1 2815900 + 69888 16946 46669 47692 81418 81418 0.03166459151509571 VGYAYVDSQF 10 Unmodified _VGYAYVDSQF_ 0 0 0 REV__ENSG00000078061|ENST00000377045|ARAF REV__ENSG00000078061|ENST00000377045|ARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5128173828125 3 383.513473 1147.51859 -0.6031 -0.0002313 -0.83517 -0.0003203 -1.4383 -0.0005516 383.51312420747297 17.137 0.21339 17.137 17.038 17.252 0 75 47 2 0 0 0 0.70951 2 8381 8381;8481 0.77653 0.31819 1 596190 + 69889 17621 46670 47693 81419;81420 81419 -0.049268575188989416 VGYFLPILKD 10 Unmodified _VGYFLPILKD_ 0 0 0 REV__ENSG00000278889|ENST00000341959|OR2S2 REV__ENSG00000278889|ENST00000341959|OR2S2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.8361206054688 2 582.8368 1163.65905 NaN NaN NaN NaN NaN NaN NaN 65.853 1 65.369 64.869 65.869 -0.48428 0 0 0 0.76313 1 35950 35950 13.906 4.5229 1 + 69890 24676 46671 47694 81421 81421 0.08376346205318441 VGYFPRNL 8 Unmodified _VGYFPRNL_ 0 0 0 ENSG00000125879|ENST00000246081|OTOR ENSG00000125879|ENST00000246081|OTOR ENSG00000125879|ENST00000246081|OTOR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.730712890625 2 483.263802 964.513051 0.53768 0.00025984 0.75846 0.00036654 1.2961 0.00062638 483.26374418062426 45.046 0.17724 40.194 40.133 40.31 -4.852 17 11 2 0 0 0 8.7369 1 27639 27639 19.439 5.9311 1 5116000 69891 3907 46672 47695 81422 81422 0.029375084799426077 VGYGAAGL 8 Unmodified _VGYGAAGL_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MSMS AL20221201_MKP_PDAC_01 4 354.2240600585938 2 354.189771 706.36499 NaN NaN NaN NaN NaN NaN NaN 14.939 1 12.412 11.912 12.912 -2.5273 0 0 0 0.97444 1 7624 7624 2.8892 0 1 69892 10258 46673 47696 81423 81423 6.197226105086884E-05 VGYGEPIS 8 Unmodified _VGYGEPIS_ 0 0 0 REV__nc|ENSG00000113391|Q8WUF8-4|ARB2A REV__nc|ENSG00000113391|Q8WUF8-4|ARB2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.2056884765625 2 411.205618 820.396684 NaN NaN NaN NaN NaN NaN NaN 16.153 1 16.153 15.653 16.653 0 0 0 0 0.97444 1 7853 7853 0.79363 0 1 + 69893 29579 46674 47697 81424 81424 -0.02069854810599736 VGYGGGPV 8 Unmodified _VGYGGGPV_ 0 0 0 REV__ENST00000261942.6_1_5:175934624-175934870:+|nuORF REV__ENST00000261942.6_1_5:175934624-175934870:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8475646972656 2 353.181946 704.34934 NaN NaN NaN NaN NaN NaN NaN 19.046 1 19.054 18.554 19.554 0.0078487 0 0 0 0.97444 1 9676 9676 0.79363 0 1 + 69894 25009 46675 47698 81425 81425 -0.014660892909432732 VGYGIKKL 8 Unmodified _VGYGIKKL_ 0 0 0 ENSG00000114942|ENST00000392222|EEF1B2 ENSG00000114942|ENST00000392222|EEF1B2 ENSG00000114942|ENST00000392222|EEF1B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2802734375 2 439.278921 876.543289 NaN NaN NaN NaN NaN NaN NaN 58.235 1 58.174 57.674 58.674 -0.060719 0 0 0 0.97444 1 31713 31713 2.8892 0 1 69895 3074 46676 47699 81426 81426 0.1000786714514561 VGYGMRAGS 9 Unmodified _VGYGMRAGS_ 0 0 0 REV__ENST00000480242.1_1_2:96950067-96950127:-|nuORF REV__ENST00000480242.1_1_2:96950067-96950127:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 449.2175903320312 2 449.215995 896.417436 NaN NaN NaN NaN NaN NaN NaN 79.029 1 72.854 72.354 73.354 -6.1757 0 0 0 0.7453 1 51767 51767 7.9102 2.6795 1 + 69896 27668 46677 47700 81427 81427 -0.03491587702592369 VGYGPFLY 8 Unmodified _VGYGPFLY_ 0 0 0 REV__ENSG00000254726|ENST00000532414|MEX3A REV__ENSG00000254726|ENST00000532414|MEX3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.234375 2 458.234179 914.453805 NaN NaN NaN NaN NaN NaN NaN 24.749 1 24.749 24.249 25.249 0 0 0 0 0.97444 1 12659 12659 2.8892 0 1 + 69897 24528 46678 47701 81428 81428 -0.0068438753424970855 VGYGQKFFIA 10 Unmodified _VGYGQKFFIA_ 0 0 0 nc|ENSG00000082126|Q96JB8-2|MPP4;ENSG00000082126|ENST00000409474|MPP4;nc|ENSG00000082126|Q96JB8-5|MPP4;nc|ENSG00000082126|Q96JB8-4|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 nc|ENSG00000082126|Q96JB8-2|MPP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2057495117188 3 377.206203 1128.59678 -0.54673 -0.00020623 0.019371 7.307E-06 -0.52736 -0.00019892 377.20612394733894 18.162 0.18718 18.162 18.093 18.28 0 39 24 2 0 0 0 0.70951 1 9010 9010 0.77653 0.21336 1 1147800 69898 1338 46679 47702 81429 81429 0.03762619857002392 VGYGSLYMKR 10 Unmodified _VGYGSLYMKR_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2;REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2095336914062 3 391.874348 1172.60121 -0.5379 -0.00021079 0.80847 0.00031682 0.27057 0.00010603 391.87468126858295 16.447 0.15159 16.448 16.376 16.528 0.0010548 104 47 3 0 0 0 0.71276 1 8084 8084 0.62683 0.35781 1 1793900 + 69899 18245;27429 46680 47703 81430 81430 0.0218176100825076 VGYGSLYMKR 10 Unmodified _VGYGSLYMKR_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2;REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.874348 1172.60121 -0.6413 -0.00025131 0.31325 0.00012276 -0.32805 -0.00012855 391.8744908299994 16.147 0.11778 16.147 16.078 16.196 0 -0.15066 -0.00031789 NaN 0.62683 42 25 2 NaN NaN NaN NaN 0 NaN NaN 0 715070 + 69900 18245;27429 46680 47703 0.0218176100825076 VGYGSLYMKR 10 Unmodified _VGYGSLYMKR_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2;REV__ENST00000467305.1_1_13:96637506-96665674:-|nuORF REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.874348 1172.60121 -0.5379 -0.00021079 0.80847 0.00031682 0.27057 0.00010603 391.87468126858295 16.447 0.15159 16.448 16.376 16.528 0.0010548 0.15066 0.0002643 NaN 0.62683 104 47 3 NaN NaN NaN NaN 0 NaN NaN 0 1793900 + 69901 18245;27429 46680 47703 0.0218176100825076 VGYIETFSY 9 Unmodified _VGYIETFSY_ 0 0 0 ENST00000514296.5_3_5:74808260-74808353:+|nuORF ENST00000514296.5_3_5:74808260-74808353:+|nuORF ENST00000514296.5_3_5:74808260-74808353:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.75634765625 2 539.758215 1077.50188 NaN NaN NaN NaN NaN NaN NaN 19.457 1 19.465 18.965 19.965 0.0078487 0 0 0 0.82396 1 9897 9897 4.756 0.42677 1 69902 14650 46681 47704 81431 81431 -0.03377358404873121 VGYIYDEFV 9 Unmodified _VGYIYDEFV_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7658081054688 2 552.76604 1103.51753 NaN NaN NaN NaN NaN NaN NaN 22.385 1 22.385 21.885 22.885 0 0 0 0 0.85737 1 11383 11383 0.6015 0 1 + 69903 19385 46682 47705 81432 81432 -0.03009071887800019 VGYKLVFII 9 Unmodified _VGYKLVFII_ 0 0 0 ENST00000273258.3_1_3:69154230-69154353:+|nuORF ENST00000273258.3_1_3:69154230-69154353:+|nuORF ENST00000273258.3_1_3:69154230-69154353:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.224609375 3 351.223194 1050.64775 NaN NaN NaN NaN NaN NaN NaN 14.563 1 12.06 11.56 12.56 -2.5029 0 0 0 0.82015 1 7405 7405 2.9952 0 1 69904 11378 46683 47706 81433 81433 0.12445568901853221 VGYKNVGTVR 10 Unmodified _VGYKNVGTVR_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8123779296875 2 546.811648 1091.60874 0.58152 0.00031798 -1.516 -0.00082899 -0.93452 -0.00051101 546.8114374835116 67.091 1.9067 60.916 59.965 61.871 -6.1757 249 108 3 0 0 0 0.32072 2 43754 43754;44150 26.268 0.24744 1 75944000 + 69905 21279 46684 47707 81434;81435 81434 0.06660236600191638 VGYKWSWPI 9 Unmodified _VGYKWSWPI_ 0 0 0 REV__ENST00000359513.8_1_11:46667456-46670726:+|nuORF REV__ENST00000359513.8_1_11:46667456-46670726:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.5240478515625 3 379.202682 1134.58622 1.1465 0.00043475 -0.51181 -0.00019408 0.63468 0.00024067 379.2023613552331 18.293 0.24475 15.671 15.548 15.793 -2.6215 27 18 2 0 0 0 0.21302 1 9663 9663 5.7319 2.1448 1 4482600 + 69906 25890 46685 47708 81436 81436 0.02430637202564867 VGYLDKAVIH 10 Unmodified _VGYLDKAVIH_ 0 0 0 ENSG00000203963|ENST00000684719|C1orf141 ENSG00000203963|ENST00000684719|C1orf141 ENSG00000203963|ENST00000684719|C1orf141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8175659179688 2 557.816399 1113.61824 0.53754 0.00029985 0.35088 0.00019573 0.88842 0.00049558 557.816706543529 52.967 0.30885 52.515 52.338 52.647 -0.45173 37 15 3 0 0 0 0.48505 1 28694 28694 17.113 4.8722 1 5381800 69907 10236 46686 47709 81437 81437 0.06598004885699993 VGYLDRNLE 9 Unmodified _VGYLDRNLE_ 0 0 0 ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP ENSG00000197746|ENST00000394936|PSAP ENSG00000197746|ENST00000394936|PSAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7799072265625 2 539.780013 1077.54547 NaN NaN NaN NaN NaN NaN NaN 17.308 1 17.313 16.813 17.813 0.0050564 0 0 0 0.85737 1 8725 8725 0.6015 0 1 69908 9995 46687 47710 81438 81438 0.009802510922781948 VGYLFFSD 8 Unmodified _VGYLFFSD_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2687072753906 2 474.229094 946.443634 NaN NaN NaN NaN NaN NaN NaN 16.447 1 16.452 15.952 16.952 0.0050564 0 0 0 0.97444 1 8247 8247 0.79363 0 1 69909 1325 46688 47711 81439 81439 -0.03172995259478739 VGYLRKSW 8 Unmodified _VGYLRKSW_ 0 0 0 REV__nc|ENSG00000180287|Q8N7P1-3|PLD5 REV__nc|ENSG00000180287|Q8N7P1-3|PLD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.783447265625 2 504.784902 1007.55525 NaN NaN NaN NaN NaN NaN NaN 28.919 1 28.949 28.449 29.449 0.030106 0 0 0 0.97444 1 15072 15072 5.2307 0.47466 1 + 69910 23148 46689 47712 81440 81440 0.05177483888326151 VGYNRPLQ 8 Unmodified _VGYNRPLQ_ 0 0 0 ENST00000586487.2_1_18:45396854-45396920:-|nuORF ENST00000586487.2_1_18:45396854-45396920:-|nuORF ENST00000586487.2_1_18:45396854-45396920:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.23486328125 2 473.758884 945.503215 0.11397 5.3997E-05 -0.14826 -7.0241E-05 -0.034289 -1.6245E-05 473.75878973446163 23.179 0.47722 20.4 20.166 20.644 -2.7784 103 39 3 0 0 0 0.80232 1 12387 12387 5.2307 0 1 75811000 69911 15621 46690 47713 81441 81441 0.028283204745775947 VGYNTTVL 8 Unmodified _VGYNTTVL_ 0 0 0 REV__ENSG00000172538|ENST00000311787|FAM170B REV__ENSG00000172538|ENST00000311787|FAM170B MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7352294921875 2 433.734543 865.454533 1.3437 0.00058281 -0.84181 -0.00036512 0.50189 0.00021769 433.7340646811479 37.53 0.39678 33.246 32.991 33.387 -4.2835 39 23 2 0 0 0 0.6895 1 21921 21921 18.135 1.1927 1 13820000 + 69912 22659 46691 47714 81442 81442 0.0164240711480943 VGYPPALL 8 Unmodified _VGYPPALL_ 0 0 0 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 REV__nc|ENSG00000091428|Q8WZA2-5|RAPGEF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2439270019531 2 415.244547 828.47454 NaN NaN NaN NaN NaN NaN NaN 33.888 1 33.917 33.417 34.417 0.028934 0 0 0 0.97444 1 17844 17844 0.79363 0 1 + 69913 17889 46692 47715 81443 81443 0.05344202845424206 VGYPRRGY 8 Unmodified _VGYPRRGY_ 0 0 0 REV__ENSG00000129084|ENST00000396394|PSMA1 REV__ENSG00000129084|ENST00000396394|PSMA1 MSMS AL20221201_MKP_PDAC_01 4 484.2584838867188 2 484.259051 966.503549 NaN NaN NaN NaN NaN NaN NaN 105.26 1 99.083 98.583 99.583 -6.1757 0 0 0 0.97444 1 70521 70521 2.3027 0 1 + 69914 19649 46693 47716 81444 81444 0.018957401944248886 VGYQFRFL 8 Unmodified _VGYQFRFL_ 0 0 0 ENST00000451997.5_1_22:38062312-38062468:+|nuORF ENST00000451997.5_1_22:38062312-38062468:+|nuORF ENST00000451997.5_1_22:38062312-38062468:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2770385742188 2 515.279452 1028.54435 0.27992 0.00014424 -3.6105 -0.0018604 -3.3306 -0.0017162 515.2771729457727 20.265 0.10453 20.276 20.221 20.326 0.010551 7 5 2 0 0 0 0.80232 1 10352 10352 5.2307 0.47466 1 252360 69915 13534 46694 47717 81445 81445 0.03122081514038655 VGYRDHAI 8 Unmodified _VGYRDHAI_ 0 0 0 REV__ENST00000368072.9_1_1:160247107-160247371:-|nuORF REV__ENST00000368072.9_1_1:160247107-160247371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 930.4842529296875 1 930.479191 929.471915 3.0795 0.0028654 1.3271 0.0012348 4.4065 0.0041002 930.4804135489661 97.11 0.67747 97.103 96.826 97.503 -0.007019 62 25 3 0 0 0 0.80975 1 53916 53916 0.79363 0 1 23123000 + 69916 26003 46695 47718 81446 81446 0.004357474404741879 VGYRWRAF 8 Unmodified _VGYRWRAF_ 0 0 0 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.1903991699219 3 352.190888 1053.55083 -0.86434 -0.00030441 -1.7724 -0.00062423 -2.6368 -0.00092865 352.5246100131609 32.155 0.28374 32.155 31.92 32.204 0 20 13 2 0 0 0 0.77907 1 16762 16762 7.2892 2.3922 1 1537700 + 69917 23614 46696 47719 81447 81447 0.026200194654165898 VGYRWRAF 8 Unmodified _VGYRWRAF_ 0 0 0 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 352.190888 1053.55083 -0.86434 -0.00030441 -1.7724 -0.00062423 -2.6368 -0.00092865 352.5246100131609 32.155 0.28374 32.155 31.92 32.204 0 0.10729 0.00027767 NaN 7.2892 20 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1537700 + 69918 23614 46696 47719 0.026200194654165898 VGYRWRAF 8 Unmodified _VGYRWRAF_ 0 0 0 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 REV__ENSG00000187021|ENST00000358834|PNLIPRP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 352.190888 1053.55083 1.7583 0.00061925 -2.4626 -0.0008673 -0.70431 -0.00024805 352.1899387280577 36.133 0.29627 31.94 31.741 32.037 -4.1928 -0.10729 -0.00045153 NaN 7.2892 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2921500 + 69919 23614 46696 47719 0.026200194654165898 VGYSAAPA 8 Unmodified _VGYSAAPA_ 0 0 0 REV__ENST00000359369.8_1_22:36140254-36146490:-|nuORF REV__ENST00000359369.8_1_22:36140254-36146490:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5194091796875 2 368.187229 734.359904 NaN NaN NaN NaN NaN NaN NaN 14.273 1 14.273 13.773 14.773 0 0 0 0 0.97444 1 6773 6773 0.79363 0 1 + 69920 18043 46697 47720 81448 81448 -0.017901066365311635 VGYSCTPS 8 Unmodified _VGYSCTPS_ 0 0 0 REV__ENST00000396191.5_1_7:32109982-32110375:-|nuORF REV__ENST00000396191.5_1_7:32109982-32110375:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 407.0147094726562 2 407.176004 812.337454 NaN NaN NaN NaN NaN NaN NaN 18.573 1 15.952 15.452 16.452 -2.6215 0 0 0 0.97348 1 9792 9792 5.7604 3.1829 1 + 69921 26501 46698 47721 81449 81449 -0.07622074096445886 VGYSLSLG 8 Unmodified _VGYSLSLG_ 0 0 0 ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR ENSG00000215644|ENST00000400723|GCGR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5504455566406 2 398.215986 794.417419 NaN NaN NaN NaN NaN NaN NaN 18.35 1 18.35 17.85 18.85 0 0 0 0 0.97444 1 9116 9116 0.79363 0 1 69922 10535 46699 47722 81450 81450 0.011987355690735058 VGYSQLEVGAF 11 Unmodified _VGYSQLEVGAF_ 0 0 0 REV__ENST00000548741.5_1_12:70687896-70687962:+|nuORF REV__ENST00000548741.5_1_12:70687896-70687962:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5335083007812 3 390.532756 1168.57644 1.4235 0.00055592 -0.07029 -2.7451E-05 1.3532 0.00052847 390.53299596426746 89.816 0.35645 83.64 83.418 83.774 -6.1757 43 19 3 0 0 0 0.63851 1 59236 59236 4.7159 0 1 31979000 + 69923 28686 46700 47723 81451 81451 -0.001105955934690428 VGYSWHEPL 9 Unmodified _VGYSWHEPL_ 0 0 0 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 MSMS AL20221201_MKP_PDAC_01 4 363.1794128417969 3 363.178425 1086.51345 NaN NaN NaN NaN NaN NaN NaN 84.628 1 78.452 77.952 78.952 -6.1757 0 0 0 0.82396 1 55689 55689 2.7352 0.23671 1 + 69924 22142 46701 47724 81452 81452 -0.026351165908636176 VGYSWHEPL 9 Unmodified _VGYSWHEPL_ 0 0 0 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 REV__nc|ENSG00000166689|Q6IQ23|PLEKHA7 MSMS AL20221201_MKP_PDAC_01 4 363.1802673339844 3 363.178425 1086.51345 NaN NaN NaN NaN NaN NaN NaN 85.003 1 78.827 78.327 79.327 -6.1757 0 0 0 0.82396 1 55957 55957 2.7352 0.23671 1 + 69925 22142 46701 47724 81453 81453 -0.026351165908636176 VGYTFVYL 8 Unmodified _VGYTFVYL_ 0 0 0 REV__ENSG00000172292|ENST00000305747|CERS6 REV__ENSG00000172292|ENST00000305747|CERS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2546997070312 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 19.78 1 19.788 19.288 20.288 0.0078487 0 0 0 0.97444 1 10071 10071 0.79363 0 1 + 69926 22640 46702 47725 81454 81454 0.013841681542771767 VGYTTLST 8 Unmodified _VGYTTLST_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2470397949219 2 421.218726 840.422899 NaN NaN NaN NaN NaN NaN NaN 29.135 1 29.165 28.665 29.665 0.030106 0 0 0 0.97444 1 15190 15190 2.5775 0 1 + 69927 21791 46703 47726 81455 81455 -0.003695856391459529 VGYTVRFDD 9 Unmodified _VGYTVRFDD_ 0 0 0 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.84130859375 3 357.841701 1070.50327 NaN NaN NaN NaN NaN NaN NaN 17.333 1 17.333 16.833 17.833 0 0 0 0 0.85737 1 8531 8531 0.26902 0 1 69928 297 46704 47727 81456 81456 -0.029157243160852886 VGYVDYGNF 9 Unmodified _VGYVDYGNF_ 0 0 0 ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 ENSG00000095627|ENST00000695399|TDRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2340087890625 2 517.234907 1032.45526 0.48546 0.00025109 -3.8136 -0.0019725 -3.3281 -0.0017214 517.2337046325574 75.772 0.44662 75.294 75.104 75.551 -0.47714 38 19 3 0 0 0 0.54444 1 41534 41534 4.756 0.42677 1 2205600 69929 1658 46705 47728 81457 81457 -0.059667982361588656 VGYVGDGV 8 Unmodified _VGYVGDGV_ 0 0 0 REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 382.8465881347656 2 383.192511 764.370469 NaN NaN NaN NaN NaN NaN NaN 13.816 1 11.313 10.813 11.813 -2.5029 0 0 0 0.97444 1 7004 7004 0.79363 0 1 + 69930 20995 46706 47729 81458 81458 -0.021141239820849478 VGYVLPNL 8 Unmodified _VGYVLPNL_ 0 0 0 REV__ENSG00000183313|ENST00000332249|OR52L1 REV__ENSG00000183313|ENST00000332249|OR52L1 MSMS AL20221201_MKP_PDAC_01 4 437.7560119628906 2 437.755278 873.496004 NaN NaN NaN NaN NaN NaN NaN 19.688 1 17.031 16.531 17.531 -2.6564 0 0 0 0.97444 1 10450 10450 2.8892 0 1 + 69931 23335 46707 47730 81459 81459 0.05419587874132503 VGYYTIPSMDD 11 Unmodified _VGYYTIPSMDD_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.775146484375 2 630.776279 1259.538 0.07637 4.8173E-05 -0.93081 -0.00058713 -0.85444 -0.00053896 630.7757696298364 99.076 0.2177 98.883 98.752 98.97 -0.19321 25 7 4 0 0 0 0.65108 1 54084 54084 8.7454 3.4485 1 4339700 69932 2734 46708 47731 81460 81460 -0.08138269290316202 VHAAWPAA 8 Unmodified _VHAAWPAA_ 0 0 0 ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.716064453125 2 411.716488 821.418422 NaN NaN NaN NaN NaN NaN NaN 29.785 1 29.785 29.285 30.285 0 0 0 0 0.94749 1 15444 15444 11.114 0 1 69933 11815 46709 47732 81461 81461 0.0005699472859532762 VHAAWPAA 8 Unmodified _VHAAWPAA_ 0 0 0 ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.7171325683594 2 411.716488 821.418422 0.66013 0.00027179 -0.074594 -3.0711E-05 0.58554 0.00024108 411.716389546788 29.714 0.29031 29.633 29.551 29.841 -0.080429 21 13 2 0 0 0 0.76859 1 15410 15410 11.114 0 1 14676000 69934 11815 46709 47732 81462 81462 0.0005699472859532762 VHAAWPAA 8 Unmodified _VHAAWPAA_ 0 0 0 ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF ENST00000326153.9_1_X:224107-229437:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7166137695312 2 411.716488 821.418422 1.377 0.00056692 -1.221 -0.00050271 0.15595 6.4209E-05 411.71611859607674 21.338 0.41497 18.603 18.43 18.844 -2.7348 91 36 4 0 0 0 0.76859 2 11379 11379;11495 11.114 0 1 66551000 69935 11815 46709 47732 81463;81464 81463 0.0005699472859532762 VHADLLPSK 9 Unmodified _VHADLLPSK_ 0 0 0 nc|ENSG00000140265|Q8IWY8-3|ZSCAN29;nc|ENSG00000140265|Q8IWY8-2|ZSCAN29;ENSG00000140265|ENST00000684362|ZSCAN29 nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 nc|ENSG00000140265|Q8IWY8-3|ZSCAN29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.5569458007812 1 979.557107 978.549831 0.24423 0.00023924 -0.7147 -0.00070009 -0.47047 -0.00046085 979.5563432295982 63.268 0.41279 62.782 62.603 63.016 -0.48617 60 18 4 0 0 0 0.10734 1 34434 34434 32.305 0 1 28564000 69936 5214 46710 47733 81465 81465 0.05969760305845284 VHADRNTFHRF 11 Unmodified _VHADRNTFHRF_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.6804809570312 4 350.679905 1398.69051 -0.54851 -0.00019235 1.2774 0.00044795 0.72887 0.0002556 350.68047862329195 19.289 0.11736 19.312 19.237 19.354 0.023106 17 7 3 0 0 0 0.70147 1 9726 9726 4.1166 3.1031 1 758720 69937 3214 46711 47734 81466 81466 0.00711732011973254 VHADRNTFHRF 11 Unmodified _VHADRNTFHRF_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.9316711425781 4 350.679905 1398.69051 -0.019058 -6.6834E-06 1.0307 0.00036145 1.0117 0.00035477 350.68015462950177 19.439 0.13873 19.447 19.376 19.514 0.0078487 22 8 3 0 0 0 0.68282 1 9875 9875 5.8681 4.8546 1 1829600 69938 3214 46711 47734 81467 81467 0.00711732011973254 VHADRNTFHRF 11 Unmodified _VHADRNTFHRF_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2381286621094 3 467.237448 1398.69051 0.075162 3.5119E-05 0.78779 0.00036808 0.86295 0.0004032 467.2380648002944 19.425 0.13916 19.433 19.36 19.5 0.0078487 12 8 2 0 0 0 0.65706 1 9896 9896 8.2864 5.8516 1 1146000 69939 3214 46711 47734 81468 81468 0.00711732011973254 VHADRNTFHRF 11 Unmodified _VHADRNTFHRF_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.6806640625 4 350.679905 1398.69051 1.9113 0.00067026 -0.3671 -0.00012874 1.5442 0.00054152 350.6798431632262 21.503 0.48192 18.768 18.62 19.102 -2.7348 74 37 3 0 0 0 0.42951 2 11591 11469;11591 19.987 14.119 1 9299300 69940 3214 46711 47734 81469;81470 81470 0.00711732011973254 VHADRNTFHRF 11 Unmodified _VHADRNTFHRF_ 0 0 0 ENSG00000116337|ENST00000528667|AMPD2;ENST00000526301.5_1_1:110162158-110172443:+|nuORF;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;nc|ENSG00000116337|Q01433-4|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 ENSG00000116337|ENST00000528667|AMPD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 466.7335510253906 3 467.237448 1398.69051 1.1598 0.00054191 -2.5658 -0.0011989 -1.406 -0.00065695 467.23556005595304 21.539 0.28622 18.804 18.669 18.955 -2.7348 35 21 2 0 0 0 0.28766 1 11592 11592 7.9454 5.8594 1 5427800 69941 3214 46711 47734 81471 81471 0.00711732011973254 VHAFVKIVFY 10 Unmodified _VHAFVKIVFY_ 0 0 0 REV__ENST00000229795.7_2_6:36078211-36078337:+|nuORF REV__ENST00000229795.7_2_6:36078211-36078337:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 408.2381896972656 3 408.237615 1221.69102 NaN NaN NaN NaN NaN NaN NaN 84.531 1 78.355 77.855 78.855 -6.1757 0 0 0 0.69334 1 55615 55615 10.151 4.3671 1 + 69942 24811 46712 47735 81472 81472 0.08903758679139173 VHAGGDDRGEH 11 Unmodified _VHAGGDDRGEH_ 0 0 0 ENST00000406453.3_1_7:5331370-5336744:+|nuORF ENST00000406453.3_1_7:5331370-5336744:+|nuORF ENST00000406453.3_1_7:5331370-5336744:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8391723632812 3 383.839242 1148.4959 NaN NaN NaN NaN NaN NaN NaN 0.8452 1 0.82457 0.32457 1.3246 -0.020623 0 0 0 0.9435 1 435 435 0 0 1 69943 12930 46713 47736 81473 81473 -0.07241063863830277 VHAGNVKL 8 Unmodified _VHAGNVKL_ 0 0 0 REV__ENSG00000171456|ENST00000375687|ASXL1 REV__ENSG00000171456|ENST00000375687|ASXL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2509765625 2 419.250695 836.486836 NaN NaN NaN NaN NaN NaN NaN 29.248 1 29.248 28.748 29.748 0 0 0 0 0.97348 1 15144 15144 5.7604 0 1 + 69944 22562 46714 47737 81474 81474 0.06205239308462751 VHAGPQPE 8 Unmodified _VHAGPQPE_ 0 0 0 REV__ENST00000345664.10_1_1:173769357-173769537:-|nuORF REV__ENST00000345664.10_1_1:173769357-173769537:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.708984375 2 417.70886 833.403166 NaN NaN NaN NaN NaN NaN NaN 25.081 1 25.081 24.581 25.581 0 0 0 0 0.9706 1 12846 12846 6.3541 0 1 + 69945 25755 46715 47738 81475 81475 -0.02019916859251225 VHAGVRSYI 9 Unmodified _VHAGVRSYI_ 0 0 0 nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000535379.1_1_11:114107968-114121274:+|nuORF nc|ENSG00000109906|Q05516-2|ZBTB16 nc|ENSG00000109906|Q05516-2|ZBTB16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.0108337402344 2 501.279983 1000.54541 0.14228 7.1323E-05 3.5285 0.0017688 3.6708 0.0018401 501.78378662884506 34.201 0.20551 34.23 34.103 34.308 0.028931 19 9 3 0 0 0 0.20139 1 18064 18064 10.824 1.4765 1 2796000 69946 2680 46716 47739 81476 81476 0.04516295882945087 VHAGVRSYIC 10 Unmodified _VHAGVRSYIC_ 0 0 0 nc|ENSG00000109906|Q05516-2|ZBTB16;ENSG00000109906|ENST00000335953|ZBTB16;ENST00000535379.1_1_11:114107968-114121274:+|nuORF nc|ENSG00000109906|Q05516-2|ZBTB16 nc|ENSG00000109906|Q05516-2|ZBTB16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8587951660156 3 368.858809 1103.5546 0.052782 1.9469E-05 0.041493 1.5305E-05 0.094275 3.4774E-05 368.8588513353779 19.593 0.18338 19.601 19.529 19.713 0.0078487 26 10 3 0 0 0 0.63399 1 9983 9983 5.4027 0 1 4991900 69947 2680 46717 47740 81477 81477 0.006963211769743793 VHAHAGGLP 9 Unmodified _VHAHAGGLP_ 0 0 0 REV__ENSG00000166813|ENST00000394412|KIF7 REV__ENSG00000166813|ENST00000394412|KIF7 MSMS AL20221201_MKP_PDAC_01 4 429.7344970703125 2 429.732669 857.450785 NaN NaN NaN NaN NaN NaN NaN 24.336 1 21.508 21.008 22.008 -2.8273 0 0 0 0.70111 1 13243 13243 9.3474 0 1 + 69948 22151 46718 47741 81478 81478 0.016357821316205445 VHAIDVTFY 9 Unmodified _VHAIDVTFY_ 0 0 0 REV__ENSG00000136932|ENST00000375119|TRMO REV__ENSG00000136932|ENST00000375119|TRMO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3189697265625 2 532.7742 1063.53385 0.64881 0.00034567 -1.9949 -0.0010628 -1.3461 -0.00071714 533.2742554559404 74.024 0.13347 73.548 73.504 73.638 -0.47588 8 5 2 0 0 0 0.19613 1 40562 40562 12.532 3.9383 1 537640 + 69949 20201 46719 47742 81479 81479 0.004620540689529662 VHALDLEW 8 Unmodified _VHALDLEW_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7514953613281 2 491.753267 981.491981 0.087387 4.2973E-05 -0.92937 -0.00045702 -0.84198 -0.00041405 491.7529797232798 62.098 0.32317 62.098 61.951 62.274 0 23 15 2 0 0 0 0.77907 1 34709 34709 10.183 0.83596 1 3234900 69950 10142 46720 47743 81480 81480 0.0004949838041738985 VHALDLEW 8 Unmodified _VHALDLEW_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.7522583007812 2 491.753267 981.491981 0.80926 0.00039796 -1.4284 -0.00070241 -0.61912 -0.00030446 491.75209704218395 62.575 0.26797 62.087 61.915 62.183 -0.48764 30 12 3 0 0 0 0.5953 1 34058 34058 26.341 2.3207 1 8628100 69951 10142 46720 47743 81481 81481 0.0004949838041738985 VHAQHHRCHHT 11 Unmodified _VHAQHHRCHHT_ 0 0 0 REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.82080078125 2 681.820878 1361.6272 NaN NaN NaN NaN NaN NaN NaN 17.064 1 17.069 16.569 17.569 0.0050564 0 0 0 0.9435 1 8590 8590 0 0 1 + 69952 27534 46721 47744 81482 81482 -0.039145319769204434 VHCCLRNNF 9 Unmodified _VHCCLRNNF_ 0 0 0 ENST00000336349.5_1_11:18636174-18636219:-|nuORF ENST00000336349.5_1_11:18636174-18636219:-|nuORF ENST00000336349.5_1_11:18636174-18636219:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.1716003417969 3 369.172511 1104.4957 -0.41749 -0.00015412 -1.8838 -0.00069545 -2.3013 -0.00084958 369.5060030076673 29.509 0.25067 29.509 29.411 29.662 0 30 16 2 0 0 0 0.61256 1 15290 15290 0.26902 0.1097 1 11145000 69953 11911 46722 47745 81483 81483 -0.05236478389019794 VHCGWVAV 8 Unmodified _VHCGWVAV_ 0 0 0 REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7192077636719 2 435.718173 869.421793 0.36205 0.00015775 -0.16245 -7.0781E-05 0.1996 8.697E-05 435.71803541375374 30.954 0.22125 30.851 30.717 30.939 -0.10269 12 8 2 0 0 0 0.76859 1 16089 16089 11.114 3.2043 1 1428400 + 69954 26200 46723 47746 81484 81484 -0.01814078489030635 VHCGWVAV 8 Unmodified _VHCGWVAV_ 0 0 0 REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF REV__ENST00000375286.7_1_17:73061353-73061731:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.7183837890625 2 435.718173 869.421793 0.22328 9.7286E-05 -0.43095 -0.00018777 -0.20768 -9.0488E-05 435.7181306715648 42.097 0.28962 42.088 41.937 42.227 -0.0088196 30 13 3 0 0 0 0.70131 1 22606 22606 17.087 17.087 1 74077000 + 69955 26200 46723 47746 81485 81485 -0.01814078489030635 VHCHPCEFR 9 Unmodified _VHCHPCEFR_ 0 0 0 REV__ENSG00000170684|ENST00000303809|ZNF296 REV__ENSG00000170684|ENST00000303809|ZNF296 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5001525878906 3 376.500628 1126.48005 NaN NaN NaN NaN NaN NaN NaN 25.869 1 25.869 25.369 26.369 0 0 0 0 0.85737 1 13277 13277 0.26902 0 1 + 69956 22504 46724 47747 81486 81486 -0.0781276490606615 VHCKFQKKL 9 Unmodified _VHCKFQKKL_ 0 0 0 nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-2|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF nc|ENSG00000163946|Q9UK61-4|TASOR nc|ENSG00000163946|Q9UK61-4|TASOR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.8776550292969 3 377.55495 1129.64302 1.31 0.0004946 -1.3821 -0.00052183 -0.072136 -2.7235E-05 377.55385415459415 90.392 0.28136 84.216 84.074 84.355 -6.1757 23 16 2 0 0 0 0.20528 1 59674 59674 5.2969 0 1 26946000 69957 7103 46725 47748 81487 81487 0.08338361487426482 VHCLVSVVF 9 Unmodified _VHCLVSVVF_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74467717-74469013:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7748413085938 2 501.775688 1001.53682 0.63922 0.00032075 -0.22006 -0.00011042 0.41917 0.00021033 501.7755310719204 56.787 0.50462 50.811 50.581 51.086 -5.9769 68 29 3 0 0 0 0.2143 2 36160 36160;36286 21.747 4.8044 1 67258000 69958 4158 46726 47749 81488;81489 81488 0.036116059221058094 VHCLVSVVF 9 Unmodified _VHCLVSVVF_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000590168.5_1_17:74467717-74469013:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7764892578125 2 501.775688 1001.53682 0.33091 0.00016604 0.60259 0.00030236 0.9335 0.00046841 501.7761270831694 57.977 0.43891 51.949 51.753 52.192 -6.0275 38 24 2 0 0 0 0.095405 2 37165 37029;37165 34.102 34.102 1 56193000 69959 4158 46726 47749 81490;81491 81491 0.036116059221058094 VHCTTELT 8 Unmodified _VHCTTELT_ 0 0 0 REV__CON__P12763 REV__CON__P12763 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2155456542969 2 452.21566 902.416767 NaN NaN NaN NaN NaN NaN NaN 21.719 1 21.742 21.242 22.242 0.022896 0 0 0 0.97444 1 11030 11030 2.8892 0 1 + + 69960 16848 46727 47750 81492 81492 -0.038344271423284226 VHCWAASL 8 Unmodified _VHCWAASL_ 0 0 0 REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7153015136719 2 443.71563 885.416708 -0.17471 -7.752E-05 -1.4115 -0.00062631 -1.5862 -0.00070383 443.7151598496462 29.518 0.29187 29.518 29.37 29.662 0 68 18 4 0 0 0 0.72953 1 15359 15359 14.582 0 1 213590000 + 69961 28888 46728 47751 81493 81493 -0.030583823516622033 VHCWAASL 8 Unmodified _VHCWAASL_ 0 0 0 REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7154541015625 2 443.71563 885.416708 1.3338 0.00059185 -1.2039 -0.00053419 0.12994 5.7656E-05 443.715062510511 21.267 0.42726 18.574 18.4 18.827 -2.693 72 36 3 0 0 0 0.65867 2 11317 11317;11427 20.871 3.7847 1 16616000 + 69962 28888 46728 47751 81494;81495 81494 -0.030583823516622033 VHCWAASL 8 Unmodified _VHCWAASL_ 0 0 0 REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7160034179688 2 443.71563 885.416708 0.7196 0.0003193 -0.89779 -0.00039836 -0.17819 -7.9066E-05 443.7154279127125 33.029 0.50858 29.173 28.904 29.413 -3.8562 125 31 6 0 0 0 0.65867 1 18799 18799 20.871 3.7847 1 882930000 + 69963 28888 46728 47751 81496 81496 -0.030583823516622033 VHCWAASL 8 Unmodified _VHCWAASL_ 0 0 0 REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF REV__ENST00000564085.5_1_16:77769737-77775844:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7164001464844 2 443.71563 885.416708 1.164 0.0005165 -0.8183 -0.00036309 0.34573 0.00015341 443.71533862652757 33.412 1.0233 29.426 29.264 30.287 -3.9853 164 57 4 0 0 0 0.72953 1 19533 19533 14.582 0 1 1107100000 + 69964 28888 46728 47751 81497 81497 -0.030583823516622033 VHDASEEYKH 10 Unmodified _VHDASEEYKH_ 0 0 0 ENST00000486082.5_1_1:27657613-27661179:+|nuORF;nc|ENSG00000186501|Q9H0R3-2|TMEM222;ENST00000464720.5_1_1:27657613-27661954:+|nuORF;ENST00000470223.1_1_1:27660299-27660773:+|nuORF;ENST00000471456.1_1_1:27660299-27661954:+|nuORF;ENSG00000186501|ENST00000374076|TMEM222 ENST00000486082.5_1_1:27657613-27661179:+|nuORF ENST00000486082.5_1_1:27657613-27661179:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8540954589844 3 405.519398 1213.53637 -0.22777 -9.2366E-05 0.97299 0.00039457 0.74522 0.0003022 405.51986482505663 33.023 0.34378 32.864 32.664 33.008 -0.15918 34 13 3 0 0 0 0.70951 1 17284 17284 0.77653 0 1 5248800 69965 9481 46729 47752 81498 81498 -0.06186142264073169 VHDKSRCQL 9 Unmodified _VHDKSRCQL_ 0 0 0 nc|ENSG00000142530|Q6IPT2-2|GARIN5A;ENSG00000142530|ENST00000600100|GARIN5A nc|ENSG00000142530|Q6IPT2-2|GARIN5A nc|ENSG00000142530|Q6IPT2-2|GARIN5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.77294921875 2 543.279657 1084.54476 0.046133 2.5063E-05 -1.9535 -0.0010613 -1.9074 -0.0010362 543.2785707247918 68.827 0.53349 68.346 68.118 68.652 -0.48071 54 21 4 0 0 0 0.5029 1 37723 37723 7.2892 0 1 5383500 69966 5422 46730 47753 81499 81499 0.0058713317157526035 VHDRLDRY 8 Unmodified _VHDRLDRY_ 0 0 0 ENST00000434206.1_1_3:43020805-43095327:+|nuORF;ENSG00000144649|ENST00000430121|GASK1A ENST00000434206.1_1_3:43020805-43095327:+|nuORF ENST00000434206.1_1_3:43020805-43095327:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7503051757812 2 537.277972 1072.54139 0.52655 0.0002829 1.7046 0.00091585 2.2312 0.0011988 537.2784332886879 50.788 0.28143 50.374 50.236 50.518 -0.41351 27 13 3 0 0 0 8.7369 1 27359 27359 13.508 3.3245 1 2736700 69967 5627 46731 47754 81500 81500 0.008022063892212827 VHDRTLLSVID 11 Unmodified _VHDRTLLSVID_ 0 0 0 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 ENSG00000197056|ENST00000359858|ZMYM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2389831542969 3 423.238343 1266.6932 -0.071949 -3.0451E-05 0.98772 0.00041804 0.91577 0.00038759 423.23873419995306 30.253 0.42961 30.283 30.047 30.477 0.030104 42 18 4 0 0 0 0.73506 1 15875 15875 1.0136 0 1 3622300 69968 9902 46732 47755 81501 81501 0.07052142626298519 VHDVRFHHFP 10 Unmodified _VHDVRFHHFP_ 0 0 0 ENST00000483781.5_1_2:98330105-98349944:+|nuORF;ENSG00000115085|ENST00000264972|ZAP70 ENST00000483781.5_1_2:98330105-98349944:+|nuORF ENST00000483781.5_1_2:98330105-98349944:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8879089355469 3 430.887868 1289.64177 -0.522 -0.00022492 0.45588 0.00019643 -0.066117 -2.8489E-05 430.8882734162861 14.782 0.42913 14.782 14.71 15.139 0 150 116 2 0 0 0 0.72196 1 7070 7070 0.15932 0.15932 1 5164600 69969 3084 46733 47756 81502 81502 0.008538634428759906 VHEEFINNM 9 Unmodified _VHEEFINNM_ 0 0 0 ENSG00000157107|ENST00000430046|FCHO2;nc|ENSG00000157107|Q0JRZ9-3|FCHO2;nc|ENSG00000157107|Q0JRZ9-2|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 ENSG00000157107|ENST00000430046|FCHO2 MSMS AL20221201_MKP_PDAC_01 4 378.0167846679688 3 378.174574 1131.50189 NaN NaN NaN NaN NaN NaN NaN 15.46 1 12.933 12.433 13.433 -2.5273 0 0 0 0.84564 1 7933 7933 1.0715 0.10919 1 69970 6501 46734 47757 81503 81503 -0.058596816765202675 VHEELDELDGR 11 Unmodified _VHEELDELDGR_ 0 0 0 REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF REV__ENST00000393522.8_1_5:175516482-175536190:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.8776550292969 3 437.877363 1310.61026 0.16521 7.2344E-05 -1.2021 -0.00052638 -1.0369 -0.00045404 437.8768319439152 40.084 0.17967 40.084 39.952 40.131 0 11 8 2 0 0 0 0.6889 1 21527 21527 2.4348 0 1 2443800 + 69971 22443 46735 47758 81504 81504 -0.03262218892405144 VHEFLDYIFDF 11 Unmodified _VHEFLDYIFDF_ 0 0 0 REV__MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant REV__MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 722.8424072265625 2 722.84281 1443.67107 -0.010253 -7.4111E-06 -1.2913 -0.00093338 -1.3015 -0.00094079 722.8421954472058 78.211 0.14094 78.211 78.15 78.291 0 6 5 2 0 0 0 0.7326 1 43487 43487 1.1933 0.88631 1 187910 + 69972 20781 46736 47759 81505 81505 -0.03302081842161897 VHEKRFHL 8 Unmodified _VHEKRFHL_ 0 0 0 ENST00000420509.1_1_2:206951001-206951199:+|nuORF ENST00000420509.1_1_2:206951001-206951199:+|nuORF ENST00000420509.1_1_2:206951001-206951199:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.3031616210938 2 533.30125 1064.58795 NaN NaN NaN NaN NaN NaN NaN 19.493 1 16.837 16.337 17.337 -2.6564 0 0 0 0.95973 1 10331 10331 8.5933 1.8701 1 69973 13099 46737 47760 81506 81506 0.05823691011187293 VHEQAACI 8 Unmodified _VHEQAACI_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7109375 2 435.710545 869.406537 0.31682 0.00013804 1.5006 0.00065383 1.8174 0.00079187 435.7110562050578 63.281 0.34734 62.795 62.622 62.969 -0.48617 51 15 4 0 0 0 0.80044 1 34466 34466 6.3541 0.59368 1 6529000 + 69974 19669 46738 47761 81507 81507 -0.03338990076883874 VHEQAACI 8 Unmodified _VHEQAACI_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 435.710545 869.406537 0.19131 8.3355E-05 1.6736 0.00072921 1.8649 0.00081257 435.7110148036816 62.867 0.33027 62.867 62.633 62.963 0 0.035944 0.00011352 NaN 6.3541 23 13 2 NaN NaN NaN NaN 0 NaN NaN 0 1394200 + 69975 19669 46738 47761 -0.03338990076883874 VHEQAACI 8 Unmodified _VHEQAACI_ 0 0 0 REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.710545 869.406537 0.31682 0.00013804 1.5006 0.00065383 1.8174 0.00079187 435.7110562050578 63.281 0.34734 62.795 62.622 62.969 -0.48617 -0.035944 -3.7249E-05 NaN 6.3541 51 15 4 NaN NaN NaN NaN 0 NaN NaN 0 6529000 + 69976 19669 46738 47761 -0.03338990076883874 VHERGHWNN 9 Unmodified _VHERGHWNN_ 0 0 0 nc|ENSG00000132164|P48066-2|SLC6A11;ENSG00000132164|ENST00000254488|SLC6A11 nc|ENSG00000132164|P48066-2|SLC6A11 nc|ENSG00000132164|P48066-2|SLC6A11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.270751953125 2 574.770845 1147.52714 0.60461 0.00034751 0.79626 0.00045767 1.4009 0.00080518 574.7721220126004 49.131 0.59638 48.759 48.446 49.043 -0.37172 102 29 5 0 0 0 0.39863 1 26490 26490 12.532 3.1841 1 60892000 69977 4374 46739 47762 81508 81508 -0.04072446039049282 VHESQHVRRG 10 Unmodified _VHESQHVRRG_ 0 0 0 REV__ENST00000579647.1_1_18:2653232-2655380:-|nuORF REV__ENST00000579647.1_1_18:2653232-2655380:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.882568359375 3 402.214643 1203.6221 NaN NaN NaN NaN NaN NaN NaN 18.102 1 15.481 14.981 15.981 -2.6215 0 0 0 0.96981 1 9515 9515 1.9064 0 1 + 69978 29052 46740 47763 81509 81509 0.028434874321419557 VHEYTKEEL 9 Unmodified _VHEYTKEEL_ 0 0 0 nc|ENSG00000154305|Q5JRA6-2|MIA3;ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-3|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 nc|ENSG00000154305|Q5JRA6-2|MIA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.1928405761719 3 383.192511 1146.5557 0.93624 0.00035876 0.23845 9.1372E-05 1.1747 0.00045013 383.1924633893951 27.053 0.36297 24.017 23.836 24.199 -3.0365 54 18 4 0 0 0 0.23158 1 15026 15026 19.362 4.9566 1 62727000 69979 6317 46741 47764 81510 81510 -0.01171185973134925 VHFASYAD 8 Unmodified _VHFASYAD_ 0 0 0 REV__RASL11B|p.V190A|1|0.17|ENSG00000128045|chr4:52865627-52865627|T/C|missense_variant REV__RASL11B|p.V190A|1|0.17|ENSG00000128045|chr4:52865627-52865627|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2079467773438 2 455.208692 908.402832 NaN NaN NaN NaN NaN NaN NaN 19.394 1 19.394 18.894 19.894 0 0 0 0 0.97444 1 9695 9695 0.79363 0 1 + 69980 30084 46742 47765 81511 81511 -0.055033365791018696 VHFCVPCTFE 10 Unmodified _VHFCVPCTFE_ 0 0 0 REV__ENST00000468272.1_1_20:402858-409338:+|nuORF REV__ENST00000468272.1_1_20:402858-409338:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.1738586425781 3 394.508789 1180.50454 NaN NaN NaN NaN NaN NaN NaN 27.829 1 27.783 27.283 28.283 -0.046408 0 0 0 0.91523 1 14352 14352 3.8763 0.55669 1 + 69981 19518 46743 47766 81512 81512 -0.07849549543220746 VHFFHLLGCW 10 Unmodified _VHFFHLLGCW_ 0 0 0 ENST00000457307.1_1_20:43994210-43995752:+|nuORF;ENSG00000204070|ENST00000243918|SYS1 ENST00000457307.1_1_20:43994210-43995752:+|nuORF ENST00000457307.1_1_20:43994210-43995752:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.813232421875 2 629.813136 1257.61172 NaN NaN NaN NaN NaN NaN NaN 94.557 1 94.137 93.637 94.637 -0.42044 0 0 0 1.0061 1 51659 51659 0 0 1 69982 10239 46744 47767 81513 81513 -0.006782115466421601 VHFNFMHQG 9 Unmodified _VHFNFMHQG_ 0 0 0 ENST00000477982.2_1_13:77575078-77575330:-|nuORF ENST00000477982.2_1_13:77575078-77575330:-|nuORF ENST00000477982.2_1_13:77575078-77575330:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8403015136719 3 372.839638 1115.49708 1.8045 0.00067278 1.1458 0.00042722 2.9503 0.0011 373.1749533985273 33.564 0.62621 29.579 29.507 30.133 -3.9853 53 34 2 0 0 0 0.49272 1 19279 19279 4.897 0 1 7933700 69983 14006 46745 47768 81514 81514 -0.05604521028612908 VHFNNNYEL 9 Unmodified _VHFNNNYEL_ 0 0 0 REV__ENST00000425988.1_1_13:23411483-23411888:-|nuORF REV__ENST00000425988.1_1_13:23411483-23411888:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2689819335938 2 575.269813 1148.52507 0.1653 9.5091E-05 -0.38644 -0.00022231 -0.22114 -0.00012722 575.2695357433992 48.977 0.41359 48.977 48.761 49.174 0 64 19 4 0 0 0 0.37804 1 27011 27011 13.508 4.9146 1 94270000 + 69984 21054 46746 47769 81515 81515 -0.0432491956753438 VHFPMVVY 8 Unmodified _VHFPMVVY_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32433463-32434067:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2568359375 2 496.257131 990.499709 0.51193 0.00025405 -1.2474 -0.00061903 -0.73547 -0.00036498 496.2565343408119 63.84 0.41991 63.355 63.172 63.592 -0.48512 75 22 4 0 0 0 0.42709 1 34852 34852 41.817 0 1 58675000 69985 3016 46747 47770 81516 81516 0.004079343763578436 VHFPMVVY 8 Unmodified _VHFPMVVY_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32433463-32434067:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2577514648438 2 496.257131 990.499709 0.98203 0.00048734 -0.19598 -9.7255E-05 0.78605 0.00039008 496.2570966704985 74.088 3.3657 67.912 66.351 69.717 -6.1757 510 174 4 0 0 0 0.2373 2 48468 48468;49351 64.081 10.517 1 265590000 69986 3016 46747 47770 81517;81518 81517 0.004079343763578436 VHFPMVVY 8 Unmodified _VHFPMVVY_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32433463-32434067:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MSMS AL20221201_MKP_PDAC_01 4 496.2565307617188 2 496.257131 990.499709 NaN NaN NaN NaN NaN NaN NaN 68.835 1 62.66 62.16 63.16 -6.1757 0 0 0 0.29204 1 44941 44941 64.081 11.747 1 69987 3016 46747 47770 81519 81519 0.004079343763578436 VHFPMVVY 8 Unmodified _VHFPMVVY_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A;ENST00000429033.1_1_21:32433463-32434067:-|nuORF nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.7623291015625 2 496.257131 990.499709 1.0262 0.00050927 -2.235 -0.0011091 -1.2088 -0.00059986 496.25502010223653 69.194 0.27584 63.018 62.782 63.058 -6.1757 23 15 2 0 0 0 8.7369 1 45092 45092 24.21 7.1234 1 27328000 69988 3016 46747 47770 81520 81520 0.004079343763578436 VHFSPAHF 8 Unmodified _VHFSPAHF_ 0 0 0 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 REV__nc|ENSG00000168538|Q7Z392-4|TRAPPC11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.4131774902344 2 471.235045 940.455536 NaN NaN NaN NaN NaN NaN NaN 29.546 1 29.576 29.076 30.076 0.030106 0 0 0 0.95201 1 15424 15424 10.183 2.2732 1 + 69989 22320 46748 47771 81521 81521 -0.017073337256192644 VHFSPFPL 8 Unmodified _VHFSPFPL_ 0 0 0 ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF ENST00000298307.9_1_14:50235090-50235165:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2555847167969 2 472.255446 942.496338 0.28358 0.00013392 -0.51432 -0.00024289 -0.23074 -0.00010897 472.2552279952031 51.845 0.30523 51.411 51.285 51.59 -0.43367 25 15 2 0 0 0 0.76859 1 27983 27983 11.114 11.114 1 3189400 69990 11532 46749 47772 81522 81522 0.022790075940065435 VHGAENFIQH 10 Unmodified _VHGAENFIQH_ 0 0 0 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 ENSG00000139679|ENST00000620633|LPAR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5244140625 3 384.524595 1150.55196 -0.52975 -0.0002037 0.36005 0.00013845 -0.16971 -6.5256E-05 384.5245140332293 18.845 0.17966 18.845 18.76 18.94 0 25 12 3 0 0 0 0.69064 1 9385 9385 1.9064 0.1641 1 1761200 69991 5177 46750 47773 81523 81523 -0.01729810956339861 VHGAPGVW 8 Unmodified _VHGAPGVW_ 0 0 0 REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.716796875 2 411.716488 821.418422 NaN NaN NaN NaN NaN NaN NaN 15.491 1 15.477 14.977 15.977 -0.014067 0 0 0 0.97444 1 7605 7605 2.8892 0 1 + 69992 28474 46751 47774 81524 81524 0.0005699472861806498 VHGAPGVW 8 Unmodified _VHGAPGVW_ 0 0 0 REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.7176513671875 2 411.716488 821.418422 0.76775 0.0003161 0.0062151 2.5589E-06 0.77397 0.00031866 411.7164409884099 33.038 0.47178 29.182 28.989 29.461 -3.8562 43 29 2 0 0 0 0.76859 1 18971 18971 11.114 0 1 30354000 + 69993 28474 46751 47774 81525 81525 0.0005699472861806498 VHGGGGGG 8 Unmodified _VHGGGGGG_ 0 0 0 ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2736206054688 1 597.273949 596.266673 -0.74117 -0.00044268 1.2158 0.00072614 0.47458 0.00028346 597.2747375970376 104.8 0.22769 104.75 104.71 104.93 -0.048737 148 92 2 0 0 0 0.81107 1 58170 58170 0 0 1 10061000 69994 15809 46752 47775 81526 81526 -0.04760986299083925 VHGGGGGG 8 Unmodified _VHGGGGGG_ 0 0 0 ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 597.273949 596.266673 0.031463 1.8792E-05 0.86241 0.0005151 0.89387 0.00053389 597.2745199196263 104.78 0.2793 104.78 104.74 105.02 0 0.03169 -1.5833E-05 NaN 0 180 119 2 NaN NaN NaN NaN 0 NaN NaN 0 19200000 69995 15809 46752 47775 -0.04760986299083925 VHGGGGGG 8 Unmodified _VHGGGGGG_ 0 0 0 ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF ENST00000601673.1_7:6523004-6523760:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 597.273949 596.266673 0.38755 0.00023147 0.65436 0.00039083 1.0419 0.00062231 597.2743767346644 104.81 0.26796 104.72 104.68 104.94 -0.091774 -0.032341 -0.0001401 NaN 0 187 113 2 NaN NaN NaN NaN 0 NaN NaN 0 15692000 69996 15809 46752 47775 -0.04760986299083925 VHGKRYAYR 9 Unmodified _VHGKRYAYR_ 0 0 0 ENSG00000163497|ENST00000295727|FEV ENSG00000163497|ENST00000295727|FEV ENSG00000163497|ENST00000295727|FEV MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8499145507812 3 383.880713 1148.62031 -0.36592 -0.00014047 -0.54367 -0.0002087 -0.90959 -0.00034917 383.8804775564005 23.796 0.2769 23.796 23.659 23.936 0 34 13 3 0 0 0 0.21493 1 12093 12093 2.4985 0 1 3614800 69997 7003 46753 47776 81527 81527 0.051944784141596756 VHGLGAHP 8 Unmodified _VHGLGAHP_ 0 0 0 ENSG00000165757|ENST00000375377|JCAD ENSG00000165757|ENST00000375377|JCAD ENSG00000165757|ENST00000375377|JCAD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2144165039062 2 394.214112 786.413671 -0.38803 -0.00015297 1.7878 0.00070476 1.3997 0.00055179 394.2145311896963 40.749 0.17721 40.749 40.639 40.817 0 19 10 3 0 0 0 0.80975 1 21893 21893 0.79363 0 1 12449000 69998 7385 46754 47777 81528 81528 0.011921105858505143 VHGPKTPC 8 Unmodified _VHGPKTPC_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.7146911621094 2 419.71563 837.416708 -0.1683 -7.064E-05 -4.0882 -0.0017159 -4.2565 -0.0017865 419.7138213920618 32.497 0.1925 32.368 32.245 32.437 -0.12915 16 8 2 0 0 0 0.72953 1 16917 16917 14.582 1.0738 1 2247000 69999 4073 46755 47778 81529 81529 -0.008503823516548437 VHGPSAAP 8 Unmodified _VHGPSAAP_ 0 0 0 REV__ENSG00000109089|ENST00000337231|CDR2L REV__ENSG00000109089|ENST00000337231|CDR2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1928100585938 2 368.192845 734.371138 -0.37809 -0.00013921 0.24128 8.8838E-05 -0.13681 -5.0371E-05 368.19291249621426 21.755 0.48336 21.755 21.456 21.939 0 147 70 3 0 0 0 0.80044 1 10994 10994 6.3541 0 1 4734700 + 70000 18643 46756 47779 81530 81530 -0.006672845423963736 VHGSEDQD 8 Unmodified _VHGSEDQD_ 0 0 0 ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7164611816406 2 443.680496 885.346439 -0.028772 -1.2765E-05 0.13764 6.1066E-05 0.10886 4.8301E-05 443.6801806799316 38.267 0.11599 37.986 37.892 38.008 -0.28135 5 4 2 0 0 0 8.7369 1 20118 20118 2.8892 0 1 214660 70001 4575 46757 47780 81531 81531 -0.10082009206428211 VHGSNIKVI 9 Unmodified _VHGSNIKVI_ 0 0 0 ENST00000585720.1_1_17:58285392-58286144:-|nuORF ENST00000585720.1_1_17:58285392-58286144:-|nuORF ENST00000585720.1_1_17:58285392-58286144:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 483.7266845703125 2 483.790184 965.565815 0.97593 0.00047215 -0.35831 -0.00017335 0.61762 0.0002988 483.7901644228035 42.897 0.45142 38.212 37.917 38.369 -4.6846 47 28 2 0 0 0 0.16418 1 25990 25990 19.257 8.4331 1 8654500 70002 15613 46758 47781 81532 81532 0.08165466542754984 VHGSPITS 8 Unmodified _VHGSPITS_ 0 0 0 REV__nc|ENSG00000137634|Q6UWF7-2|NXPE4 REV__nc|ENSG00000137634|Q6UWF7-2|NXPE4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.19580078125 2 399.211235 796.407917 -0.49461 -0.00019745 1.1836 0.00047249 0.68895 0.00027504 399.211620663883 35.169 0.21157 35.169 35.053 35.265 0 12 10 2 0 0 0 8.7369 1 18543 18543 5.2307 0 1 1363900 + 70003 20255 46759 47782 81533 81533 0.0015696728352168066 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7158508300781 2 443.713945 885.413337 -0.31037 -0.00013772 3.7552 0.0016662 3.4448 0.0015285 443.71543312362 34.354 0.1806 34.163 34.046 34.226 -0.19131 9 6 2 0 0 0 0.72953 1 17912 17912 14.582 0 1 1104100 70004 5557 46760 47783 81534 81534 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7155456542969 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 27.339 1 27.292 26.792 27.792 -0.046408 0 0 0 0.93066 1 14087 14087 14.582 3.4672 1 70005 5557 46760 47783 81535 81535 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7156982421875 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 33.079 1 32.92 32.42 33.42 -0.15918 0 0 0 0.88073 1 17246 17246 19.439 5.9311 1 70006 5557 46760 47783 81536 81536 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7158508300781 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 35.008 1 34.785 34.285 35.285 -0.2224 0 0 0 0.93066 1 18317 18317 14.582 1.0738 1 70007 5557 46760 47783 81537 81537 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.716064453125 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 31.705 1 31.735 31.235 32.235 0.030106 0 0 0 0.93066 1 16623 16623 14.582 3.4672 1 70008 5557 46760 47783 81538 81538 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.715576171875 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 33.234 1 33.263 32.763 33.763 0.028934 0 0 0 0.93066 1 17478 17478 14.582 2.9414 1 70009 5557 46760 47783 81539 81539 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20221201_MKP_PDAC_01 4 443.7149658203125 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 27.324 1 24.287 23.787 24.787 -3.0365 0 0 0 0.73801 1 15130 15130 26.341 4.5946 1 70010 5557 46760 47783 81540 81540 -0.03395309134009494 VHGWPGSF 8 Unmodified _VHGWPGSF_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MSMS AL20221201_MKP_PDAC_01 4 443.7164001464844 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 35.239 1 31.144 30.644 31.644 -4.0951 0 0 0 0.85111 1 20414 20414 20.871 1.4322 1 70011 5557 46760 47783 81541 81541 -0.03395309134009494 VHHFEVGR 8 Unmodified _VHHFEVGR_ 0 0 0 REV__ENST00000204726.7_3_12:133346563-133346842:-|nuORF REV__ENST00000204726.7_3_12:133346563-133346842:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.7567749023438 2 490.756675 979.498798 NaN NaN NaN NaN NaN NaN NaN 24.936 1 22.053 21.553 22.553 -2.8831 0 0 0 0.9192 1 13610 13610 16.942 0 1 + 70012 24723 46761 47784 81542 81542 0.008228560516727157 VHIDVLQY 8 Unmodified _VHIDVLQY_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.2608947753906 2 493.768917 985.523281 1.1668 0.00057615 -0.57451 -0.00028367 0.59234 0.00029248 493.7709980887351 55.435 0.22238 49.514 49.381 49.603 -5.9211 24 13 3 0 0 0 8.7369 1 35357 35357 19.439 0 1 14614000 + 70013 23192 46762 47785 81543 81543 0.0299407141451411 VHIMKLELF 9 Oxidation (M) _VHIM(Oxidation (M))KLELF_ VHIM(1)KLELF VHIM(52)KLELF 0 0 1 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.32421875 2 573.323002 1144.63145 0.58784 0.00033702 0.57402 0.0003291 1.1619 0.00066612 573.3234440449487 58.626 0.24741 58.565 58.432 58.679 -0.060719 23 12 2 0 0 0 0.036857 1 31945 31945 51.63 31.176 1 4064700 70014 8887 46763 47786 81544 81544 1499 0.06492119673407615 VHIMKLELF 9 Unmodified _VHIMKLELF_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MSMS AL20221201_MKP_PDAC_01 4 565.3258056640625 2 565.325545 1128.63654 NaN NaN NaN NaN NaN NaN NaN 97.152 1 90.976 90.476 91.476 -6.1757 0 0 0 0.096094 1 64388 64388 55.503 23.197 1 70015 8887 46763 47787 81545 81545 0.07736423536039183 VHIRKALI 8 Unmodified _VHIRKALI_ 0 0 0 REV__ENST00000493458.2_1_16:74346962-74347061:-|nuORF REV__ENST00000493458.2_1_16:74346962-74347061:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 475.3163452148438 2 475.318912 948.62327 NaN NaN NaN NaN NaN NaN NaN 98.867 1 92.691 92.191 93.191 -6.1757 0 0 0 0.81841 1 65672 65672 22.453 1.5814 1 + 70016 27921 46764 47788 81546 81546 0.1469035353898107 VHITDVASF 9 Unmodified _VHITDVASF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.760009765625 2 494.758549 987.502546 0.72534 0.00035887 0.8487 0.0004199 1.574 0.00077877 494.75954169993054 52.222 0.26015 51.788 51.631 51.891 -0.43367 24 12 3 0 0 0 0.052168 1 28191 28191 44.407 15.92 1 1505900 70017 16188 46765 47789 81547 81547 0.008294810348502324 VHIVSARTRP 10 Unmodified _VHIVSARTRP_ 0 0 0 ENST00000526084.1_1_11:7694106-7694250:-|nuORF ENST00000526084.1_1_11:7694106-7694250:-|nuORF ENST00000526084.1_1_11:7694106-7694250:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.799072265625 2 568.338364 1134.66217 1.287 0.00073144 -0.79891 -0.00045405 0.48807 0.00027739 568.3382202123878 81.377 0.043419 75.202 75.167 75.21 -6.1757 4 2 2 0 0 0 0.23227 1 53397 53397 6.7232 0 1 5275100 70018 14807 46766 47790 81548 81548 0.10023034102687234 VHIYKKMFA 9 Unmodified _VHIYKKMFA_ 0 0 0 REV__ENSG00000112118|ENST00000596288|MCM3 REV__ENSG00000112118|ENST00000596288|MCM3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.7940063476562 2 568.817887 1135.62122 0.62907 0.00035782 0.0072872 4.1451E-06 0.63635 0.00036197 568.8190831279825 58.813 0.21421 58.752 58.624 58.839 -0.060719 15 10 2 0 0 0 0.203 1 32082 32082 9.3474 0 1 1347900 + 70019 18785 46767 47791 81549 81549 0.05883556738876905 VHKASACGM 9 Unmodified _VHKASACGM_ 0 0 0 REV__ENSG00000116667|ENST00000235307|C1orf21 REV__ENSG00000116667|ENST00000235307|C1orf21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2138977050781 2 452.212398 902.410242 NaN NaN NaN NaN NaN NaN NaN 21.498 1 21.498 20.998 21.998 0 0 0 0 0.84369 1 10882 10882 2.3027 1.5091 1 + 70020 19053 46768 47792 81550 81550 -0.04486643574671234 VHKELDNY 8 Unmodified _VHKELDNY_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.7747497558594 2 509.253631 1016.49271 0.75782 0.00038592 -0.68972 -0.00035124 0.068106 3.4683E-05 509.7546071103778 83.189 0.53329 77.013 76.79 77.323 -6.1757 67 28 3 0 0 0 8.7369 1 54604 54604 9.3474 0.75416 1 16302000 + 70021 20254 46769 47793 81551 81551 -0.014877069705221402 VHKGAGRG 8 Unmodified _VHKGAGRG_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.2255249023438 2 391.225011 780.435469 0.73319 0.00028684 0.048241 1.8873E-05 0.78143 0.00030572 391.2249172357629 74.458 0.61467 73.982 73.667 74.281 -0.47588 82 25 4 0 0 0 0.81107 3 40645 40645;40744;40845 0 0 1 29962000 + 70022 18305 46770 47794 81552;81553;81554 81552 0.036469153344341976 VHKGAGRG 8 Unmodified _VHKGAGRG_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2247924804688 2 391.225011 780.435469 0.10752 4.2066E-05 0.88603 0.00034664 0.99356 0.0003887 391.2252536191538 73.343 0.62196 73.387 73.05 73.672 0.043983 64 28 3 0 0 0 0.81107 1 40314 40314 0 0 1 3943100 + 70023 18305 46770 47794 81555 81555 0.036469153344341976 VHKGAGRG 8 Unmodified _VHKGAGRG_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2248840332031 2 391.225011 780.435469 0.20465 8.0063E-05 0.55301 0.00021635 0.75766 0.00029641 391.2251247155887 73.957 0.49895 74.001 73.734 74.233 0.043983 53 22 3 0 0 0 0.80992 1 40718 40718 0.69038 0.69038 1 10236000 + 70024 18305 46770 47794 81556 81556 0.036469153344341976 VHKGAGRG 8 Unmodified _VHKGAGRG_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 391.225011 780.435469 0.40351 0.00015786 1.6257 0.00063603 2.0293 0.0007939 391.22549416319964 73.72 0.50819 73.72 73.485 73.994 0 0.16669 0.00028545 NaN 0 52 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1863600 + 70025 18305 46770 47794 0.036469153344341976 VHKGAGRG 8 Unmodified _VHKGAGRG_ 0 0 0 REV__ENSG00000103404|ENST00000219689|USP31 REV__ENSG00000103404|ENST00000219689|USP31 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 391.225011 780.435469 0.10752 4.2066E-05 0.88603 0.00034664 0.99356 0.0003887 391.2252536191538 73.343 0.62196 73.387 73.05 73.672 0.043983 -0.16669 -0.00029334 NaN 0 64 28 3 NaN NaN NaN NaN 0 NaN NaN 0 3943100 + 70026 18305 46770 47794 0.036469153344341976 VHKGHLMRI 9 Unmodified _VHKGHLMRI_ 0 0 0 REV__ENSG00000139354|ENST00000547754|GAS2L3 REV__ENSG00000139354|ENST00000547754|GAS2L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.8193359375 2 545.818753 1089.62295 NaN NaN NaN NaN NaN NaN NaN 93.341 1 93.341 92.841 93.841 0 0 0 0 0.8622 1 51606 51606 0 0 1 + 70027 20406 46771 47795 81557 81557 0.08172610547489967 VHLALLPPG 9 Unmodified _VHLALLPPG_ 0 0 0 ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2561340332031 2 458.78437 915.554188 0.18946 8.692E-05 -2.2122 -0.0010149 -2.0227 -0.000928 458.7844697540994 48.925 0.24572 48.554 48.427 48.673 -0.37172 17 12 2 0 0 0 0.203 1 26283 26283 9.3474 4.1168 1 1059000 70028 566 46772 47796 81558 81558 0.09303269519421065 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7154235839844 2 443.71563 885.416708 -0.51277 -0.00022752 0.10875 4.8256E-05 -0.40401 -0.00017927 443.71580690547546 19.692 0.44327 19.72 19.563 20.006 0.028357 84 32 4 0 0 0 0.72953 1 9938 9938 14.582 0 1 10062000 + 70029 18411 46773 47797 81559 81559 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7154846191406 2 443.71563 885.416708 0.58287 0.00025863 -0.8722 -0.00038701 -0.28933 -0.00012838 443.715344090304 29.431 0.33786 29.351 29.188 29.525 -0.080431 64 19 4 0 0 0 0.72953 1 15194 15194 14.582 0 1 513000000 + 70030 18411 46773 47797 81560 81560 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7155456542969 2 443.71563 885.416708 0.59961 0.00026606 -0.87935 -0.00039018 -0.27974 -0.00012413 443.7153493150067 29.713 0.52609 29.633 29.501 30.027 -0.080429 73 22 4 0 0 0 0.72953 1 15407 15407 14.582 0 1 557330000 + 70031 18411 46773 47797 81561 81561 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7146301269531 2 443.71563 885.416708 -0.48211 -0.00021392 -0.13555 -6.0146E-05 -0.61766 -0.00027407 443.7155609937424 35.756 0.26947 35.533 35.372 35.642 -0.2224 18 11 2 0 0 0 0.72953 1 18729 18729 14.582 0 1 3670100 + 70032 18411 46773 47797 81562 81562 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7151794433594 2 443.71563 885.416708 0.36285 0.000161 -1.0508 -0.00046624 -0.6879 -0.00030523 443.71516825232726 29.335 0.26503 29.365 29.204 29.469 0.030106 32 12 3 0 0 0 0.72953 1 15266 15266 14.582 0 1 100320000 + 70033 18411 46773 47797 81563 81563 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7160034179688 2 443.71563 885.416708 0.7196 0.0003193 -0.89779 -0.00039836 -0.17819 -7.9066E-05 443.7154279127125 33.029 0.50858 29.173 28.904 29.413 -3.8562 125 31 6 0 0 0 0.72953 1 19048 19048 14.582 0 1 882930000 + 70034 18411 46773 47797 81564 81564 -0.030583823516622033 VHLCWSAA 8 Unmodified _VHLCWSAA_ 0 0 0 REV__ENSG00000105255|ENST00000221856|FSD1 REV__ENSG00000105255|ENST00000221856|FSD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7160034179688 2 443.71563 885.416708 1.164 0.0005165 -0.8183 -0.00036309 0.34573 0.00015341 443.71533862652757 33.412 1.0233 29.426 29.264 30.287 -3.9853 164 57 4 0 0 0 0.72953 2 19162 19162;19286 14.582 0 1 1107100000 + 70035 18411 46773 47797 81565;81566 81565 -0.030583823516622033 VHLEGEKE 8 Unmodified _VHLEGEKE_ 0 0 0 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 ENSG00000036448|ENST00000262113|MYOM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7418212890625 2 470.740357 939.46616 NaN NaN NaN NaN NaN NaN NaN 31.875 1 31.905 31.405 32.405 0.030106 0 0 0 0.94494 1 16719 16719 11.64 0 1 70036 622 46774 47798 81567 81567 -0.005993958618546458 VHLEKGPLCQ 10 Unmodified _VHLEKGPLCQ_ 0 0 0 REV__ENSG00000197410|ENST00000357232|DCHS2 REV__ENSG00000197410|ENST00000357232|DCHS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2036437988281 3 375.202465 1122.58556 1.1235 0.00042152 0.3835 0.00014389 1.507 0.00056541 375.2025367437222 44.645 0.72851 39.793 39.504 40.233 -4.852 164 54 4 0 0 0 0.56348 1 27556 27556 11.518 0.02317 1 296610000 + 70037 23924 46775 47799 81568 81568 0.02917474491187022 VHLGGGGGGG 10 Unmodified _VHLGGGGGGG_ 0 0 0 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.1938781738281 2 384.193377 766.372201 NaN NaN NaN NaN NaN NaN NaN 2.6752 1 2.6031 2.1031 3.1031 -0.072029 0 0 0 1.0061 1 1322 1322 0 0 1 + 70038 21062 46776 47800 81569 81569 -0.020330701734565082 VHLLIIVLTM 10 Unmodified _VHLLIIVLTM_ 0 0 0 REV__nc|ENSG00000138613|Q8WW43-2|APH1B REV__nc|ENSG00000138613|Q8WW43-2|APH1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.366455078125 2 576.36467 1150.71479 NaN NaN NaN NaN NaN NaN NaN 103.92 1 103.87 103.37 104.37 -0.048737 0 0 0 1.0024 1 57703 57703 0.40072 0.050084 1 + 70039 20343 46777 47801 81570 81570 0.14545856121276302 VHLLKKKLL 9 Unmodified _VHLLKKKLL_ 0 0 0 ENSG00000255398|ENST00000528880|HCAR3 ENSG00000255398|ENST00000528880|HCAR3 ENSG00000255398|ENST00000528880|HCAR3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1091.266845703125 1 1091.76631 1090.75904 0.53279 0.00058168 0.19886 0.00021711 0.73164 0.00079878 1091.7636872922217 22.608 0.079979 22.626 22.57 22.65 0.01749 5 3 2 0 0 0 0.2191 1 11594 11594 0 0 1 3879900 70040 10790 46778 47802 81571 81571 0.21728628329810817 VHLLKKKLLI 10 Unmodified _VHLLKKKLLI_ 0 0 0 ENSG00000255398|ENST00000528880|HCAR3 ENSG00000255398|ENST00000528880|HCAR3 ENSG00000255398|ENST00000528880|HCAR3 MSMS AL20221201_MKP_PDAC_01 4 402.2908630371094 3 402.28831 1203.8431 NaN NaN NaN NaN NaN NaN NaN 105.63 1 99.457 98.957 99.957 -6.1757 0 0 0 1.0061 1 70765 70765 0 0 1 70041 10790 46779 47803 81572 81572 0.24933159426700513 VHLLPRPF 8 Unmodified _VHLLPRPF_ 0 0 0 ENST00000444180.3_1_10:88784431-88784476:+|nuORF ENST00000444180.3_1_10:88784431-88784476:+|nuORF ENST00000444180.3_1_10:88784431-88784476:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5883178710938 1 978.588348 977.581071 0.30893 0.00030232 -0.11937 -0.00011681 0.18956 0.00018551 978.5885780852843 93.354 0.34122 92.896 92.728 93.069 -0.4574 23 14 2 0 0 0 0.80975 1 51079 51079 0.79363 0 1 904920 70042 13435 46780 47804 81573 81573 0.09138378130603542 VHLMWQEPKE 10 Unmodified _VHLMWQEPKE_ 0 0 0 ENSG00000171105|ENST00000302850|INSR;nc|ENSG00000171105|P06213-2|INSR;ENST00000597211.1_1_19:7141597-7143049:-|nuORF ENSG00000171105|ENST00000302850|INSR ENSG00000171105|ENST00000302850|INSR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8842468261719 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 29.597 1 29.597 29.097 30.097 0 0 0 0 0.96756 1 15336 15336 4.1895 0.072875 1 70043 8062 46781 47805 81574 81574 -0.0027487130862482445 VHLPAPSA 8 Unmodified _VHLPAPSA_ 0 0 0 ENST00000300403.10_1_20:30327157-30327271:+|nuORF ENST00000300403.10_1_20:30327157-30327271:+|nuORF ENST00000300403.10_1_20:30327157-30327271:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.2246704101562 2 396.224146 790.433738 0.80162 0.00031762 -0.27003 -0.00010699 0.53159 0.00021063 396.2240307705722 49.599 0.29707 49.206 49.077 49.374 -0.3923 33 14 3 0 0 0 0.6895 1 26659 26659 18.135 4.6271 1 5647000 70044 11549 46782 47806 81575 81575 0.03013861525801076 VHLPAPSA 8 Unmodified _VHLPAPSA_ 0 0 0 ENST00000300403.10_1_20:30327157-30327271:+|nuORF ENST00000300403.10_1_20:30327157-30327271:+|nuORF ENST00000300403.10_1_20:30327157-30327271:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 396.224146 790.433738 0.37268 0.00014767 0.26794 0.00010616 0.64062 0.00025383 396.2242638934332 49.42 0.27919 49.42 49.256 49.536 0 0.10696 0.00026554 NaN 18.135 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2900900 70045 11549 46782 47806 0.03013861525801076 VHLTANHVP 9 Unmodified _VHLTANHVP_ 0 0 0 nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 nc|ENSG00000184178|Q8WU76-2|SCFD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2705993652344 2 494.272158 986.529764 NaN NaN NaN NaN NaN NaN NaN 38.191 1 38.191 37.691 38.691 0 0 0 0 0.43505 1 20382 20382 18.135 3.2967 1 70046 9227 46783 47807 81576 81576 0.035960093658900405 VHMALDVVL 9 Unmodified _VHMALDVVL_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;ENST00000493587.1_1_8:100883622-100887891:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7796630859375 2 498.78097 995.547388 0.46343 0.00023115 -3.5063 -0.0017489 -3.0429 -0.0015177 498.7795836421476 82.638 0.23141 82.14 82.053 82.284 -0.49751 12 9 2 0 0 0 0.55144 1 45277 45277 4.3292 0 1 453390 70047 16193 46784 47808 81577 81577 0.04943588576554703 VHMEVMPLF 9 Unmodified _VHMEVMPLF_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7741088867188 2 551.774831 1101.53511 1.379 0.00076091 1.0279 0.00056716 2.4069 0.0013281 551.7746991534748 98.104 0.2271 91.929 91.8 92.027 -6.1757 39 14 4 0 0 0 0.07087 1 65029 65029 53.576 30.427 1 60983000 70048 6704 46785 47809 81578 81578 -0.01159771158154399 VHMMPMQVQ 9 Unmodified _VHMMPMQVQ_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS AL20221201_MKP_PDAC_01 4 367.506591796875 3 367.506502 1099.49768 NaN NaN NaN NaN NaN NaN NaN 8.5544 1 6.0724 5.5724 6.5724 -2.482 0 0 0 0.85737 1 4319 4319 0.26902 0.1097 1 70049 16496 46786 47810 81579 81579 -0.0480918569539881 VHMPCLGHTF 10 Carbamidomethyl (C) _VHMPC(Carbamidomethyl (C))LGHTF_ VHMPC(1)LGHTF VHMPC(68)LGHTF 0 1 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.1884765625 3 400.188049 1197.54232 0.99754 0.0003992 -0.19824 -7.9333E-05 0.7993 0.00031987 400.1881209411226 52.978 0.33387 47.174 47.067 47.401 -5.8042 36 18 3 0 0 0 0.03037 2 33384 33384;33497 67.838 58.074 1 23486000 70050 10506 46787 47811 81580;81581 81580 941 -0.0485503855773004 VHNGCFPL 8 Unmodified _VHNGCFPL_ 0 0 0 REV__ENSG00000176787|ENST00000321522|OR52E2 REV__ENSG00000176787|ENST00000321522|OR52E2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7162170410156 2 443.71563 885.416708 NaN NaN NaN NaN NaN NaN NaN 30.234 1 30.154 29.654 30.654 -0.080429 0 0 0 0.93066 1 15685 15685 14.582 0 1 + 70051 22944 46788 47812 81582 81582 -0.03058382351639466 VHNGCFPL 8 Unmodified _VHNGCFPL_ 0 0 0 REV__ENSG00000176787|ENST00000321522|OR52E2 REV__ENSG00000176787|ENST00000321522|OR52E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.7164001464844 2 443.71563 885.416708 1.164 0.0005165 -0.8183 -0.00036309 0.34573 0.00015341 443.71533862652757 33.412 1.0233 29.426 29.264 30.287 -3.9853 164 57 4 0 0 0 0.72953 1 19661 19661 14.582 1.0738 1 1107100000 + 70052 22944 46788 47812 81583 81583 -0.03058382351639466 VHNHHGGG 8 Unmodified _VHNHHGGG_ 0 0 0 ENST00000395878.7_1_16:23569041-23569319:+|nuORF ENST00000395878.7_1_16:23569041-23569319:+|nuORF ENST00000395878.7_1_16:23569041-23569319:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 814.3709716796875 1 814.370309 813.363033 1.6608 0.0013525 2.2221 0.0018096 3.8829 0.0031621 814.3723053798967 62.432 0.47075 56.256 56.055 56.526 -6.1757 37 24 2 0 0 0 0.78849 2 40172 40172;40247 9.3474 9.3474 1 18221000 70053 12778 46789 47813 81584;81585 81584 -0.051114187391362975 VHPCLKCA 8 Unmodified _VHPCLKCA_ 0 0 0 REV__ENSG00000178971|ENST00000651323|CTC1 REV__ENSG00000178971|ENST00000651323|CTC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.7184448242188 2 435.719858 869.425164 NaN NaN NaN NaN NaN NaN NaN 36.658 1 36.408 35.908 36.908 -0.2497 0 0 0 0.93066 1 19241 19241 14.582 2.9414 1 + 70054 23075 46790 47814 81586 81586 -0.014771517066947126 VHPDARGA 8 Unmodified _VHPDARGA_ 0 0 0 ENST00000609552.1_1_4:83295512-83295800:+|nuORF ENST00000609552.1_1_4:83295512-83295800:+|nuORF ENST00000609552.1_1_4:83295512-83295800:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.715576171875 2 411.714476 821.4144 NaN NaN NaN NaN NaN NaN NaN 29.454 1 29.373 28.873 29.873 -0.080429 0 0 0 0.53879 1 15241 15241 38.151 6.0342 1 70055 15882 46791 47815 81587 81587 -0.003450947651003844 VHPHSSHPVHT 11 Unmodified _VHPHSSHPVHT_ 0 0 0 ENST00000571710.5_1_17:1945525-1946395:+|nuORF ENST00000571710.5_1_17:1945525-1946395:+|nuORF ENST00000571710.5_1_17:1945525-1946395:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.806396484375 2 617.807428 1233.6003 0.047284 2.9212E-05 0.45381 0.00028037 0.50109 0.00030958 618.3091835958653 24.665 0.31694 21.782 21.617 21.934 -2.8831 39 17 3 0 0 0 0.54936 1 13528 13528 13.906 1.6654 1 7619600 70056 15491 46792 47816 81588 81588 -0.007153173164169857 VHPKALPLI 9 Unmodified _VHPKALPLI_ 0 0 0 ENSG00000127483|ENST00000438032|HP1BP3;ENST00000487117.1_1_1:21103088-21106933:-|nuORF;nc|ENSG00000127483|Q5SSJ5-5|HP1BP3;ENST00000437575.5_1_1:21106393-21106933:-|nuORF ENSG00000127483|ENST00000438032|HP1BP3 ENSG00000127483|ENST00000438032|HP1BP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.2870178222656 2 494.32112 986.627687 1.0369 0.00051254 -0.38628 -0.00019095 0.65058 0.0003216 494.32076705921287 47.316 0.22793 47.278 47.157 47.385 -0.038647 18 10 2 0 0 0 0.19613 1 25512 25512 12.532 3.1841 1 2405000 70057 4012 46793 47817 81589 81589 0.13383817961903333 VHPLQVLVH 9 Unmodified _VHPLQVLVH_ 0 0 0 REV__ENSG00000117597|ENST00000491415|UTP25 REV__ENSG00000117597|ENST00000491415|UTP25 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.2908935546875 2 521.313826 1040.6131 1.9544 0.0010189 3.2591 0.001699 5.2135 0.0027179 521.3151886070549 62.516 0.15928 56.34 56.283 56.442 -6.1757 11 7 2 0 0 0 0.203 1 40408 40408 9.3474 0 1 6610700 + 70058 19117 46794 47818 81590 81590 0.09441745813751368 VHPPGLAT 8 Unmodified _VHPPGLAT_ 0 0 0 REV__ENST00000292174.4_1_11:118765992-118766067:+|nuORF REV__ENST00000292174.4_1_11:118765992-118766067:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2242431640625 2 396.224146 790.433738 0.37268 0.00014767 0.26794 0.00010616 0.64062 0.00025383 396.2242638934332 49.42 0.27919 49.42 49.256 49.536 0 22 12 2 0 0 0 0.74163 1 27189 27189 13.508 0 1 2900900 + 70059 25243 46795 47819 81591 81591 0.03013861525801076 VHPRPLPN 8 Unmodified _VHPRPLPN_ 0 0 0 REV__ENST00000533656.1_1_11:64874772-64874991:+|nuORF REV__ENST00000533656.1_1_11:64874772-64874991:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5338745117188 1 929.531561 928.524284 0.5711 0.00053085 -1.2343 -0.0011474 -0.66324 -0.0006165 929.5298680768528 62.129 0.25748 61.641 61.489 61.747 -0.48764 20 11 2 0 0 0 0.80992 1 33901 33901 0.69038 0 1 3139600 + 70060 28485 46796 47820 81592 81592 0.05716330574080075 VHPVFAPRL 9 Unmodified _VHPVFAPRL_ 0 0 0 REV__ENSG00000126254|ENST00000262633|RBM42 REV__ENSG00000126254|ENST00000262633|RBM42 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2521362304688 2 518.308544 1034.60253 0.52476 0.00027199 -1.9104 -0.00099019 -1.3857 -0.0007182 518.3076434362381 72.349 0.35501 71.873 71.686 72.041 -0.4761 21 16 2 0 0 0 0.203 1 39670 39670 9.3474 4.1168 1 708970 + 70061 19542 46797 47821 81593 81593 0.08661763159329894 VHPWRYFL 8 Unmodified _VHPWRYFL_ 0 0 0 REV__ENST00000330817.10_1_22:50294661-50295054:-|nuORF REV__ENST00000330817.10_1_22:50294661-50295054:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7506103515625 2 559.300719 1116.58688 0.83057 0.00046454 -0.49521 -0.00027697 0.33536 0.00018757 559.3002224561338 82.246 0.26553 81.75 81.629 81.895 -0.4952 16 10 2 0 0 0 8.7369 1 45026 45026 2.5775 0 1 780730 + 70062 25595 46798 47822 81594 81594 0.033254766422714965 VHPYLGLY 8 Unmodified _VHPYLGLY_ 0 0 0 REV__nc|ENSG00000095596|O43174-2|CYP26A1 REV__nc|ENSG00000095596|O43174-2|CYP26A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2597961425781 2 481.260728 960.506903 -0.82468 -0.00039689 -0.01666 -8.0179E-06 -0.84134 -0.0004049 481.26052162057005 56.326 0.25183 55.84 55.689 55.941 -0.48554 21 12 2 0 0 0 0.5245 1 30540 30540 32.454 0 1 4826800 + 70063 17946 46799 47823 81595 81595 0.025069902484119666 VHQFESLNI 9 Unmodified _VHQFESLNI_ 0 0 0 REV__ENSG00000185043|ENST00000328649|CIB1 REV__ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7839965820312 2 543.782556 1085.55056 0.083523 4.5418E-05 1.955 0.0010631 2.0385 0.0011085 543.7833153971535 66.944 0.3392 66.461 66.294 66.633 -0.48323 26 15 2 0 0 0 0.15471 1 36552 36552 27.629 1.3607 1 2903300 + 70064 23467 46800 47824 81596 81596 0.01120554954900399 VHQHVKHDY 9 Unmodified _VHQHVKHDY_ 0 0 0 REV__nc|ENSG00000127334|Q92630-2|DYRK2 REV__nc|ENSG00000127334|Q92630-2|DYRK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1975708007812 3 388.19659 1161.56794 NaN NaN NaN NaN NaN NaN NaN 21.305 1 21.333 20.833 21.833 0.028357 0 0 0 0.84369 1 10807 10807 1.1933 0 1 + 70065 19577 46801 47825 81597 81597 -0.006381047194281564 VHQIIRVII 9 Unmodified _VHQIIRVII_ 0 0 0 REV__ENST00000358410.7_1_10:70209954-70218888:-|nuORF REV__ENST00000358410.7_1_10:70209954-70218888:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8587646484375 2 545.858401 1089.70225 1.4831 0.00080957 -1.4711 -0.00080299 0.012047 6.5759E-06 545.8576534839351 106.08 0.87295 99.902 99.609 100.48 -6.1757 248 134 3 0 0 0 0.61256 2 70963 70963;71192 0.6015 0 1 7211500 + 70066 25877 46802 47826 81598;81599 81598 0.16098580773268623 VHQLIYQTL 9 Unmodified _VHQLIYQTL_ 0 0 0 REV__nc|ENSG00000186638|Q5T7B8-4|KIF24 REV__nc|ENSG00000186638|Q5T7B8-4|KIF24 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2463989257812 2 557.816399 1113.61824 0.3113 0.00017365 -1.5632 -0.000872 -1.2519 -0.00069835 557.815568619481 52.454 0.19779 52.454 52.332 52.53 0 14 8 2 0 0 0 0.21242 1 29072 29072 5.2307 0 1 796550 + 70067 23585 46803 47827 81600 81600 0.06598004885699993 VHQLVEIQK 9 Unmodified _VHQLVEIQK_ 0 0 0 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 REV__nc|ENSG00000116786|Q8IWE5-2|PLEKHM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2170104980469 3 365.216991 1092.62914 NaN NaN NaN NaN NaN NaN NaN 100.65 1 100.52 100.02 101.02 -0.13293 0 0 0 0.85798 1 54936 54936 0.23584 0 1 + 70068 19067 46804 47828 81601 81601 0.0865340725997612 VHQRPSRQ 8 Unmodified _VHQRPSRQ_ 0 0 0 REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF REV__ENST00000369872.3_1_1:110009314-110019415:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.276123046875 2 504.278306 1006.54206 NaN NaN NaN NaN NaN NaN NaN 19.864 1 17.208 16.708 17.708 -2.6564 0 0 0 0.95607 1 10553 10553 9.3474 3.587 1 + 70069 26046 46805 47829 81602 81602 0.039050458289466405 VHQWRSIW 8 Unmodified _VHQWRSIW_ 0 0 0 ENST00000456352.2_1_6:111895858-111897843:+|nuORF ENST00000456352.2_1_6:111895858-111897843:+|nuORF ENST00000456352.2_1_6:111895858-111897843:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2938232421875 2 556.293425 1110.5723 0.45162 0.00025123 0.85348 0.00047478 1.3051 0.00072602 556.2936501749753 81.313 0.41284 81.313 81.102 81.515 0 39 18 3 0 0 0 0.80143 1 45173 45173 5.7604 0.52976 1 1790500 70070 13599 46806 47830 81603 81603 0.021434044941315733 VHRGGGGG 8 Unmodified _VHRGGGGG_ 0 0 0 ENST00000426595.1_1_7:55955154-55973975:+|nuORF ENST00000426595.1_1_7:55955154-55973975:+|nuORF ENST00000426595.1_1_7:55955154-55973975:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.8281860351562 1 696.353597 695.34632 1.888 0.0013147 2.565 0.0017861 4.453 0.0031009 696.3558893001715 100.23 0.1431 100.2 100.12 100.27 -0.036301 5 4 2 0 0 0 8.7369 1 55647 55647 0 0 1 971020 70071 13182 46807 47831 81604 81604 -0.013539196250803798 VHRLREGVK 9 Unmodified _VHRLREGVK_ 0 0 0 REV__nc|ENSG00000158079|A2A3K4|PTPDC1 REV__nc|ENSG00000158079|A2A3K4|PTPDC1 MSMS AL20221201_MKP_PDAC_01 4 365.2251586914062 3 365.22448 1092.65161 NaN NaN NaN NaN NaN NaN NaN 20.618 1 17.925 17.425 18.425 -2.693 0 0 0 0.7818 1 10990 10990 4.1895 1.4543 1 + 70072 21415 46808 47832 81605 81605 0.10899051448268438 VHRQKLLTE 9 Unmodified _VHRQKLLTE_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1;REV__nc|ENSG00000273749|Q7L576-2|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2385864257812 3 375.224257 1122.65094 -0.056213 -2.1092E-05 0.80766 0.00030305 0.75145 0.00028196 375.2245360897258 33.004 0.29476 33.034 32.914 33.208 0.029747 28 12 3 0 0 0 0.21819 1 17434 17434 1.0715 0.91214 1 3400600 + 70073 24637;30002 46809 47833 81606 81606 0.09452212008568495 VHRQSGLS 8 Unmodified _VHRQSGLS_ 0 0 0 ENST00000438295.2_1_11:118134995-118135034:-|nuORF ENST00000438295.2_1_11:118134995-118135034:-|nuORF ENST00000438295.2_1_11:118134995-118135034:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2415161132812 2 442.240858 882.467164 0.6469 0.00028609 0.41714 0.00018447 1.064 0.00047056 442.24093644673934 81.917 0.41876 81.422 81.163 81.582 -0.4952 37 15 3 0 0 0 0.80975 1 44789 44789 0.79363 0 1 3282800 70074 13361 46810 47834 81607 81607 0.02122863297722688 VHRRSRPF 8 Unmodified _VHRRSRPF_ 0 0 0 REV__ENST00000559463.5_1_19:55897685-55897790:+|nuORF REV__ENST00000559463.5_1_19:55897685-55897790:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8055419921875 2 527.804491 1053.59443 NaN NaN NaN NaN NaN NaN NaN 94.605 1 94.185 93.685 94.685 -0.42044 0 0 0 0.97444 1 51684 51684 0.79363 0 1 + 70075 28815 46811 47835 81608 81608 0.06977628962567906 VHRSGNSF 8 Unmodified _VHRSGNSF_ 0 0 0 REV__ENSG00000173908|ENST00000306658|KRT28 REV__ENSG00000173908|ENST00000306658|KRT28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.224365234375 2 452.225208 902.435863 NaN NaN NaN NaN NaN NaN NaN 31.794 1 31.824 31.324 32.324 0.030106 0 0 0 0.9706 1 16675 16675 6.3541 0.59368 1 + + 70076 16884 46812 47836 81609 81609 -0.019257097363720277 VHRTEEVKH 9 Unmodified _VHRTEEVKH_ 0 0 0 ENST00000485936.5_1_20:25203457-25206230:+|nuORF;nc|ENSG00000197586|O75354-2|ENTPD6;nc|ENSG00000197586|O75354-3|ENTPD6;ENSG00000197586|ENST00000376652|ENTPD6;ENST00000471478.1_1_20:25196340-25204798:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF ENST00000485936.5_1_20:25203457-25206230:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8709411621094 3 378.871995 1133.59415 0.053596 2.0306E-05 -3.9511 -0.0014969 -3.8975 -0.0014766 379.20466357857345 31.846 0.17045 31.717 31.647 31.818 -0.12915 8 6 2 0 0 0 0.53666 1 16616 16616 2.9952 0 1 1239700 70077 9975 46813 47837 81610 81610 0.03270164452055724 VHSGASKH 8 Unmodified _VHSGASKH_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.7152709960938 2 411.714476 821.4144 NaN NaN NaN NaN NaN NaN NaN 29.547 1 29.547 29.047 30.047 0 0 0 0 0.77249 1 15308 15308 24.674 1.5255 1 70078 693 46814 47838 81611 81611 -0.003450947650890157 VHSGASKH 8 Unmodified _VHSGASKH_ 0 0 0 ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-4|MAP4 ENSG00000047849|ENST00000683076|MAP4 ENSG00000047849|ENST00000683076|MAP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.7147521972656 2 411.714476 821.4144 -0.17504 -7.2068E-05 4.0723 0.0016766 3.8973 0.0016046 411.71617468794307 29.592 0.12703 29.622 29.547 29.674 0.030106 7 5 2 0 0 0 0.6895 1 15470 15470 18.135 0 1 2317700 70079 693 46814 47838 81612 81612 -0.003450947650890157 VHSGCTSF 8 Unmodified _VHSGCTSF_ 0 0 0 REV__nc|ENSG00000262980|Q8NGH6|OR52L2P;REV__nc|ENSG00000273085|Q8NGJ3|OR52E1 REV__nc|ENSG00000262980|Q8NGH6|OR52L2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.1807556152344 2 419.18162 836.348688 NaN NaN NaN NaN NaN NaN NaN 37.806 1 37.806 37.306 38.306 0 0 0 0 0.9706 1 20148 20148 6.3541 3.4649 1 + 70080 29994;30001 46815 47839 81613 81613 -0.07603252002309091 VHSKGREKI 9 Unmodified _VHSKGREKI_ 0 0 0 ENST00000409785.8_1_2:85280528-85280699:+|nuORF ENST00000409785.8_1_2:85280528-85280699:+|nuORF ENST00000409785.8_1_2:85280528-85280699:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8982238769531 3 351.876969 1052.60908 0.1455 5.1197E-05 -1.5971 -0.00056197 -1.4516 -0.00051078 351.8769219342172 49.026 0.24705 48.983 48.867 49.114 -0.04369 13 11 2 0 0 0 0.21144 1 26521 26521 7.1017 3.5052 1 333930 70081 12966 46816 47840 81614 81614 0.08487656320039605 VHSLVVLLL 9 Unmodified _VHSLVVLLL_ 0 0 0 REV__ENSG00000161243|ENST00000292853|FBXO27 REV__ENSG00000161243|ENST00000292853|FBXO27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.8296203613281 2 496.828778 991.643003 1.6345 0.00081206 1.6553 0.00082238 3.2898 0.0016344 496.8299118931211 98.303 0.13339 92.128 92.057 92.19 -6.1757 16 8 3 0 0 0 0.010877 1 65216 65216 77.984 13.748 1 30464000 + 70082 21590 46817 47841 81615 81615 0.14684684759083666 VHSMKCAQ 8 Unmodified _VHSMKCAQ_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2130737304688 2 452.212398 902.410242 NaN NaN NaN NaN NaN NaN NaN 21.891 1 21.891 21.391 22.391 0 0 0 0 0.97444 1 11112 11112 0.79363 0 1 + 70083 23893 46818 47842 81616 81616 -0.04486643574671234 VHSPFVPG 8 Unmodified _VHSPFVPG_ 0 0 0 REV__ENST00000379834.6_1_6:7390035-7390122:+|nuORF REV__ENST00000379834.6_1_6:7390035-7390122:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.4428100585938 1 839.441015 838.433738 0.19617 0.00016468 0.47957 0.00040257 0.67575 0.00056725 839.4413564798107 49.454 0.31596 49.062 48.922 49.238 -0.3923 34 15 3 0 0 0 0.41521 1 26546 26546 42.968 2.5194 1 9584800 + 70084 26300 46819 47843 81617 81617 0.008058615258164536 VHSPQRELPG 10 Unmodified _VHSPQRELPG_ 0 0 0 ENST00000490510.5_1_10:3180225-3180593:-|nuORF ENST00000490510.5_1_10:3180225-3180593:-|nuORF ENST00000490510.5_1_10:3180225-3180593:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1795043945312 3 373.868362 1118.58326 -0.41525 -0.00015525 2.2002 0.00082257 1.7849 0.00066732 373.8692652410208 35.563 0.20345 35.34 35.268 35.472 -0.2224 15 9 2 0 0 0 0.23566 1 18677 18677 3.8763 0 1 3720100 70085 14259 46820 47844 81618 81618 0.028707620777595366 VHTCCFHLCCC 11 Unmodified _VHTCCFHLCCC_ 0 0 0 ENSG00000188056|ENST00000341495|TREML4 ENSG00000188056|ENST00000341495|TREML4 ENSG00000188056|ENST00000341495|TREML4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.4889526367188 3 423.488237 1267.44288 NaN NaN NaN NaN NaN NaN NaN 20.016 1 20.024 19.524 20.524 0.0078487 0 0 0 0.94144 1 10198 10198 0.50596 0 1 70086 9623 46821 47845 81619 81619 -0.18014263829968513 VHTDYYAKY 9 Unmodified _VHTDYYAKY_ 0 0 0 nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 nc|ENSG00000060069|Q9Y5B0-4|CTDP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2761840820312 2 580.274564 1158.53457 NaN NaN NaN NaN NaN NaN NaN 26.254 1 26.281 25.781 26.781 0.026951 0 0 0 0.6306 1 13615 13615 11.64 2.2572 1 70087 16035 46822 47846 81620 81620 -0.03835151282009974 VHTGEKPFECD 11 Unmodified _VHTGEKPFECD_ 0 0 0 ENSG00000177888|ENST00000367405|ZBTB41;nc|ENSG00000177888|Q5SVQ8-2|ZBTB41;ENST00000467322.1_1_1:197145142-197169603:-|nuORF ENSG00000177888|ENST00000367405|ZBTB41 ENSG00000177888|ENST00000367405|ZBTB41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.1896362304688 3 421.188772 1260.54449 0.21063 8.8715E-05 2.1163 0.00089137 2.327 0.00098009 421.18985155918364 50.08 0.26274 50.08 49.946 50.209 0 27 12 3 0 0 0 0.68427 1 27580 27580 2.6312 0 1 2156500 70088 8715 46823 47847 81621 81621 -0.07536331338928903 VHTGEQEMF 9 Unmodified _VHTGEQEMF_ 0 0 0 ENSG00000158691|ENST00000684592|ZSCAN12;nc|ENSG00000158691|O43309-2|ZSCAN12 ENSG00000158691|ENST00000684592|ZSCAN12 ENSG00000158691|ENST00000684592|ZSCAN12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.8264770507812 3 359.827175 1076.45969 NaN NaN NaN NaN NaN NaN NaN 29.795 1 29.795 29.295 30.295 0 0 0 0 0.57317 1 15452 15452 8.7454 1.1365 1 70089 6603 46824 47848 81622 81622 -0.0754765708488776 VHTHAFHF 8 Unmodified _VHTHAFHF_ 0 0 0 nc|ENSG00000131480|O75106-2|AOC2;ENSG00000131480|ENST00000253799|AOC2 nc|ENSG00000131480|O75106-2|AOC2 nc|ENSG00000131480|O75106-2|AOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2447509765625 2 498.245944 994.477334 NaN NaN NaN NaN NaN NaN NaN 29.766 1 29.766 29.266 30.266 0 0 0 0 0.95201 1 15432 15432 10.183 2.8942 1 70090 4332 46825 47849 81623 81623 -0.02012528977047623 VHTHTHAH 8 Unmodified _VHTHTHAH_ 0 0 0 REV__nc|ENSG00000168487|P13497-6|BMP1 REV__nc|ENSG00000168487|P13497-6|BMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2294311523438 2 470.230825 938.447097 0.38711 0.00018203 -3.0819 -0.0014492 -2.6948 -0.0012672 470.2287925736036 46.743 0.25098 41.663 41.604 41.855 -5.0805 74 45 3 0 0 0 0.46494 1 28934 28934 38.151 3.9638 1 72926000 + 70091 29770 46826 47850 81624 81624 -0.02458887642251284 VHTHYPGP 8 Unmodified _VHTHYPGP_ 0 0 0 ENST00000415244.1_1_3:196729825-196730720:+|nuORF ENST00000415244.1_1_3:196729825-196730720:+|nuORF ENST00000415244.1_1_3:196729825-196730720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 907.4415893554688 1 907.442077 906.434801 0.011476 1.0414E-05 -1.1528 -0.0010461 -1.1413 -0.0010356 907.4407874339704 62.592 0.24308 62.592 62.506 62.749 0 16 10 2 0 0 0 0.80624 1 34999 34999 2.8892 0.58649 1 927790 70092 13018 46827 47851 81625 81625 -0.022159241052804646 VHTLGVRRQN 10 Unmodified _VHTLGVRRQN_ 0 0 0 REV__ENST00000261396.5_1_1:229577072-229577156:-|nuORF REV__ENST00000261396.5_1_1:229577072-229577156:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 393.5367126464844 3 393.895022 1178.66324 0.61111 0.00024071 0.08288 3.2646E-05 0.69399 0.00027336 393.89507651177775 17.3 0.2291 14.714 14.595 14.824 -2.5866 86 34 3 0 0 0 0.2399 1 8968 8968 0.69767 0.69767 1 11950000 + 70093 24981 46828 47852 81626 81626 0.08105248471633786 VHTLIYPNY 9 Unmodified _VHTLIYPNY_ 0 0 0 ENST00000556445.1_1_14:35487839-35488318:+|nuORF ENST00000556445.1_1_14:35487839-35488318:+|nuORF ENST00000556445.1_1_14:35487839-35488318:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1797180175781 3 373.865958 1118.57605 -0.35126 -0.00013132 1.4181 0.00053016 1.0668 0.00039884 374.200967261238 36.786 0.34948 36.537 36.358 36.708 -0.2497 24 15 2 0 0 0 0.20207 1 19395 19395 11.495 1.9507 1 5976100 70094 15238 46829 47853 81627 81627 0.02150029477343196 VHTPATTP 8 Unmodified _VHTPATTP_ 0 0 0 REV__ENSG00000241322|ENST00000395906|FBXW10B REV__ENSG00000241322|ENST00000395906|FBXW10B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.2169494628906 2 412.21906 822.423567 NaN NaN NaN NaN NaN NaN NaN 15.662 1 15.648 15.148 16.148 -0.014067 0 0 0 0.95201 1 7700 7700 10.183 0 1 + 70095 24447 46830 47854 81628 81628 0.005252538005606766 VHTPLYIDYV 10 Unmodified _VHTPLYIDYV_ 0 0 0 REV__nc|ENSG00000071054|O95819-4|MAP4K4 REV__nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.822998046875 2 610.321514 1218.62847 0.11255 6.8689E-05 0.40022 0.00024426 0.51277 0.00031295 610.321570921122 89.523 0.22381 89.523 89.42 89.644 0 27 14 2 0 0 0 0.69377 1 49529 49529 3.5965 0.31518 1 934940 + 70096 29503 46831 47855 81629 81629 0.02790567820261458 VHTPLYIDYV 10 Unmodified _VHTPLYIDYV_ 0 0 0 REV__nc|ENSG00000071054|O95819-4|MAP4K4 REV__nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 610.321514 1218.62847 0.11255 6.8689E-05 0.40022 0.00024426 0.51277 0.00031295 610.321570921122 89.523 0.22381 89.523 89.42 89.644 0 0.00075901 0.00037936 NaN 3.5965 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 934940 + 70097 29503 46831 47855 0.02790567820261458 VHTTTPSQ 8 Unmodified _VHTTTPSQ_ 0 0 0 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 MSMS AL20221201_MKP_PDAC_01 4 435.7184753417969 2 435.719424 869.424296 NaN NaN NaN NaN NaN NaN NaN 49.071 1 43.675 43.175 44.175 -5.3961 0 0 0 0.80403 1 30622 30622 23.148 0 1 70098 121 46832 47856 81630 81630 -0.015639515503721668 VHTTTPSQ 8 Unmodified _VHTTTPSQ_ 0 0 0 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 chr7:39695681-39696685|36|12.78|0.57|4.48|+|1|TE_info:AluJr,AluJr_dup30466,Alu,SINE,donor,-,39695403,39695681|None,RALA|2 MSMS AL20221201_MKP_PDAC_01 4 435.718017578125 2 435.719424 869.424296 NaN NaN NaN NaN NaN NaN NaN 49.358 1 43.962 43.462 44.462 -5.3961 0 0 0 0.65904 1 30833 30833 30.225 3.3412 1 70099 121 46832 47856 81631 81631 -0.015639515503721668 VHTTYFKTI 9 Unmodified _VHTTYFKTI_ 0 0 0 ENST00000574081.5_2_17:5114023-5114077:-|nuORF ENST00000574081.5_2_17:5114023-5114077:-|nuORF ENST00000574081.5_2_17:5114023-5114077:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.3074951171875 2 555.303124 1108.5917 0.60748 0.00033733 2.0533 0.0011402 2.6608 0.0014775 555.3041325760189 94.513 0.22607 94.093 93.952 94.178 -0.42043 24 12 2 0 0 0 0.58466 1 51596 51596 2.3027 0 1 358520 70100 15506 46833 47857 81632 81632 0.04174315994373501 VHVAPDEVL 9 Unmodified _VHVAPDEVL_ 0 0 0 REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF REV__ENST00000473262.5_1_3:124837626-124909342:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7659912109375 2 489.766374 977.518196 0.2938 0.0001439 2.6307 0.0012884 2.9245 0.0014323 489.766338249094 51.677 0.32006 51.677 51.522 51.842 0 34 14 4 0 0 0 0.16776 1 28565 28565 26.341 0 1 2966300 + 70101 27536 46834 47858 81633 81633 0.028537675519032746 VHVGHVVRF 9 Unmodified _VHVGHVVRF_ 0 0 0 ENSG00000163798|ENST00000326019|SLC4A1AP;nc|ENSG00000163798|Q9BWU0-1|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP ENSG00000163798|ENST00000326019|SLC4A1AP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.53857421875 3 350.538287 1048.59303 NaN NaN NaN NaN NaN NaN NaN 28 1 28.029 27.529 28.529 0.029564 0 0 0 0.08978 1 14566 14566 41.956 21.541 1 70102 7069 46835 47859 81634 81634 0.07067994873818861 VHVGNVRQ 8 Unmodified _VHVGNVRQ_ 0 0 0 ENSG00000172432|ENST00000307126|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;nc|ENSG00000172432|Q9BX10-3|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 ENSG00000172432|ENST00000307126|GTPBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.7576599121094 2 454.756675 907.498798 1.2541 0.00057029 0.088692 4.0333E-05 1.3427 0.00061062 454.75662896795393 20.746 0.23354 18.053 17.934 18.167 -2.693 25 16 2 0 0 0 0.78849 1 11038 11038 9.3474 9.3474 1 2540400 70103 8217 46836 47860 81635 81635 0.04134856051666702 VHVLGVGL 8 Unmodified _VHVLGVGL_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.25 2 397.250163 792.485774 0.46575 0.00018502 0.40083 0.00015923 0.86658 0.00034425 397.2503590302497 40.138 0.70898 35.609 35.307 36.016 -4.5294 99 55 2 0 0 0 0.76859 1 23906 23906 11.114 0 1 63134000 70104 1491 46837 47861 81636 81636 0.08123024939561674 VHVLLMPRT 9 Unmodified _VHVLLMPRT_ 0 0 0 ENSG00000121281|ENST00000673801|ADCY7;ENST00000570187.1_1_16:50338327-50342394:+|nuORF ENSG00000121281|ENST00000673801|ADCY7 ENSG00000121281|ENST00000673801|ADCY7 MSMS AL20221201_MKP_PDAC_01 4 355.8796691894531 3 355.879433 1064.61647 NaN NaN NaN NaN NaN NaN NaN 42.456 1 37.772 37.272 38.272 -4.6846 0 0 0 0.6557 1 25653 25653 7.1017 4.3665 1 70105 3575 46838 47862 81637 81637 0.08674672596112032 VHVSHYPVLM 10 Unmodified _VHVSHYPVLM_ 0 0 0 ENST00000418596.7_1_2:201838679-201838826:-|nuORF ENST00000418596.7_1_2:201838679-201838826:-|nuORF ENST00000418596.7_1_2:201838679-201838826:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.542236328125 3 394.54271 1180.6063 NaN NaN NaN NaN NaN NaN NaN 56.516 1 56.03 55.53 56.53 -0.48554 0 0 0 0.92825 1 30691 30691 3.5871 0 1 70106 13071 46839 47863 81638 81638 0.023220648708502267 VHVTRATF 8 Unmodified _VHVTRATF_ 0 0 0 REV__ENST00000474154.5_1_2:37475563-37475659:+|nuORF REV__ENST00000474154.5_1_2:37475563-37475659:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.7619934082031 2 465.761426 929.5083 NaN NaN NaN NaN NaN NaN NaN 59.461 1 59.408 58.908 59.908 -0.053062 0 0 0 0.9706 1 32410 32410 6.3541 0 1 + 70107 27556 46840 47864 81639 81639 0.04072624337186426 VHVYRSPSFG 10 Unmodified _VHVYRSPSFG_ 0 0 0 ENSG00000184564|ENST00000647374|SLITRK6 ENSG00000184564|ENST00000647374|SLITRK6 ENSG00000184564|ENST00000647374|SLITRK6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.533203125 3 383.533091 1147.57744 NaN NaN NaN NaN NaN NaN NaN 29.589 1 29.619 29.119 30.119 0.030106 0 0 0 0.98914 1 15449 15449 0.77653 0 1 70108 9270 46841 47865 81640 81640 0.00955663566082876 VHWISHLYFFH 11 Unmodified _VHWISHLYFFH_ 0 0 0 REV__ENSG00000167769|ENST00000301452|ACER1 REV__ENSG00000167769|ENST00000301452|ACER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2581787109375 3 495.919056 1484.73534 0.82886 0.00041105 -1.0589 -0.00052513 -0.23004 -0.00011408 496.2541333716004 69.51 1.2947 63.335 62.633 63.928 -6.1757 129 71 3 0 0 0 0.6249 2 45291 45291;45424 7.9454 6.4903 1 57419000 + 70109 22253 46842 47866 81641;81642 81641 0.012361628253074741 VHWWGGPVF 9 Unmodified _VHWWGGPVF_ 0 0 0 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5341796875 3 362.183622 1083.52904 -0.23052 -8.349E-05 0.29148 0.00010557 0.060964 2.208E-05 362.18282696505605 21.724 0.26932 21.747 21.626 21.895 0.022896 20 12 2 0 0 0 0.21242 1 11050 11050 2.9952 0.49676 1 599940 + 70110 17472 46843 47867 81643 81643 -0.009387852831423515 VHYCMNEIK 9 Unmodified _VHYCMNEIK_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8734436035156 3 379.512422 1135.51544 0.5821 0.00022091 -3.9751 -0.0015086 -3.393 -0.0012877 379.5107841914384 28.55 0.32887 28.488 28.293 28.622 -0.062159 18 12 2 0 0 0 0.54444 1 14724 14724 2.7352 0 1 2020900 70111 4989 46844 47868 81644 81644 -0.04690147168935255 VHYDLKYAL 9 Unmodified _VHYDLKYAL_ 0 0 0 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 ENSG00000104142|ENST00000220509|VPS18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1800231933594 3 374.537842 1120.5917 0.42405 0.00015882 -0.60569 -0.00022685 -0.18164 -6.8032E-05 374.537515330651 40.647 0.16339 40.652 40.509 40.672 0.0050545 12 7 2 0 0 0 0.21302 1 21635 21635 2.9952 0.26005 1 1382900 70112 2181 46845 47869 81645 81645 0.0362231599435745 VHYDLVFLL 9 Unmodified _VHYDLVFLL_ 0 0 0 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant;nc|ENSG00000169436|Q8NFW1-3|COL22A1;nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1 COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant COL22A1|p.G1255Wfs*56|1|0.18|ENSG00000169436|chr8:138623740-138623741|-/A|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 559.8140258789062 2 559.815867 1117.61718 NaN NaN NaN NaN NaN NaN NaN 96.588 1 90.412 89.912 90.912 -6.1757 0 0 0 0.33856 1 64010 64010 23.148 6.0355 1 70113 134 46846 47870 81646 81646 0.06307790516802925 VHYDYMHGI 9 Unmodified _VHYDYMHGI_ 0 0 0 REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8702087402344 3 378.839415 1133.49641 -0.069809 -2.6446E-05 0.55107 0.00020877 0.48127 0.00018232 378.83954782831364 32.212 0.40026 32.083 31.866 32.266 -0.12915 28 15 2 0 0 0 0.203 1 16740 16740 1.1933 0 1 2641400 + 70114 26874 46847 47871 81647 81647 -0.06499360468319537 VHYFKGWF 8 Unmodified _VHYFKGWF_ 0 0 0 ENST00000473610.5_1_7:150648470-150652738:-|nuORF;nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000055118|Q12809-6|KCNH2;ENST00000461280.1_1_7:150646989-150652738:-|nuORF;nc|ENSG00000055118|Q12809-2|KCNH2;KCNH2|p.E857Gfs*27|1|0.14|ENSG00000055118|chr7:150948878-150948879|-/CCAGGCTGGACCAGAAGTGGTCGGAGAACTCAGGGTACATGTCCAGC|frameshift_variant;nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2 ENST00000473610.5_1_7:150648470-150652738:-|nuORF ENST00000473610.5_1_7:150648470-150652738:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2719116210938 2 542.27417 1082.53379 NaN NaN NaN NaN NaN NaN NaN 52.581 1 52.581 52.081 53.081 0 0 0 0 0.9706 1 29104 29104 6.3541 1.1234 1 70115 772 46848 47872 81648 81648 -0.004179011403948607 VHYGAAPAMA 10 Unmodified _VHYGAAPAMA_ 0 0 0 REV__ENSG00000082516|ENST00000285873|GEMIN5 REV__ENSG00000082516|ENST00000285873|GEMIN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7122497558594 2 494.23947 986.464386 0.60967 0.00030132 1.6872 0.00083389 2.2969 0.0011352 494.2403107898864 52.692 0.22011 52.25 52.149 52.37 -0.44242 14 10 2 0 0 0 0.22993 1 28546 28546 7.9102 0 1 1408700 + 70116 17708 46849 47873 81649 81649 -0.029387281514686947 VHYKQDYSF 9 Unmodified _VHYKQDYSF_ 0 0 0 REV__nc|ENSG00000170185|Q8NB14-2|USP38 REV__nc|ENSG00000170185|Q8NB14-2|USP38 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.1885681152344 3 396.189101 1185.54547 1.3626 0.00053983 -1.4012 -0.00055515 -0.038674 -1.5322E-05 396.18831296134954 21.249 0.098995 18.556 18.507 18.606 -2.693 6 5 2 0 0 0 0.21242 1 11365 11365 0.26902 0 1 2936000 + 70117 22453 46850 47874 81650 81650 -0.03987748907729838 VHYLFRSTF 9 Unmodified _VHYLFRSTF_ 0 0 0 REV__nc|ENSG00000160683|P32302-2|CXCR5 REV__nc|ENSG00000160683|P32302-2|CXCR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.5431823730469 3 390.541586 1168.60293 NaN NaN NaN NaN NaN NaN NaN 17.991 1 18.005 17.505 18.505 0.013865 0 0 0 0.84564 1 8988 8988 1.0715 0.29493 1 + 70118 21555 46851 47875 81651 81651 0.02537138088496249 VIAEILRGV 9 Unmodified _VIAEILRGV_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.3080749511719 2 485.30821 968.601866 0.47846 0.0002322 -0.093244 -4.5252E-05 0.38522 0.00018695 485.3081731674667 62.877 0.2936 62.856 62.735 63.029 -0.021614 25 14 2 0 0 0 0.15471 1 34421 34421 27.629 4.8925 1 3231800 70119 1955 46852 47876 81652 81652 0.11630923719633302 VIAFDGDANN 10 Unmodified _VIAFDGDANN_ 0 0 0 REV__ENSG00000138435|ENST00000348749|CHRNA1 REV__ENSG00000138435|ENST00000348749|CHRNA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2380981445312 2 518.240721 1034.46689 NaN NaN NaN NaN NaN NaN NaN 26.209 1 26.209 25.709 26.709 0 0 0 0 0.89532 1 13466 13466 8.1555 0.24537 1 + 70120 20334 46853 47877 81653 81653 -0.04896601212817586 VIAPNYLSF 9 Unmodified _VIAPNYLSF_ 0 0 0 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 REV__ENSG00000169826|ENST00000374466|CSGALNACT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2794799804688 2 512.279118 1022.54368 0.64767 0.00033179 -0.36629 -0.00018764 0.28139 0.00014415 512.2789394029919 78.996 0.50436 79.051 78.78 79.284 0.054977 67 19 5 0 0 0 0.078417 1 43664 43664 38.151 0 1 19301000 + 70121 22427 46854 47878 81654 81654 0.03331242074318652 VIAPVRAVL 9 Unmodified _VIAPVRAVL_ 0 0 0 ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.8151550292969 2 469.313295 936.612037 -0.3914 -0.00018369 0.40976 0.00019231 0.018354 8.6138E-06 469.3134044804697 55.781 0.27014 55.712 55.569 55.839 -0.068741 23 13 2 0 0 0 0.042911 1 30315 30315 48.346 6.2513 1 6887500 70122 10052 46855 47879 81655 81655 0.14119531444839595 VIAPVRAVL 9 Unmodified _VIAPVRAVL_ 0 0 0 ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A ENSG00000198113|ENST00000357503|TOR4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.3136596679688 2 469.313295 936.612037 0.85417 0.00040087 -0.11813 -5.5439E-05 0.73605 0.00034544 469.3133633884389 61.779 0.30116 55.603 55.48 55.782 -6.1757 23 15 2 0 0 0 0.013323 1 39810 39810 71.134 22.788 1 22600000 70123 10052 46855 47879 81656 81656 0.14119531444839595 VICMLLTDC 9 Unmodified _VICMLLTDC_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2;REV__ENSG00000096433|ENST00000605930|ITPR3 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.740478515625 2 505.739599 1009.46465 0.33533 0.00016959 -0.34894 -0.00017647 -0.013607 -6.8814E-06 505.73958498711363 70.018 0.83905 70.018 69.775 70.614 0 385 70 7 0 0 0 0.53666 2 38933 38933;39035 5.2307 0.47466 1 175880000 + 70124 19369;17961 46856 47880 81657;81658 81657 -0.039708125381480386 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7766418457031 2 470.776742 939.538931 0.82337 0.00038763 -0.13802 -6.4976E-05 0.68536 0.00032265 470.77661200910575 47.578 0.36258 47.578 47.405 47.767 0 52 16 4 0 0 0 0.30525 1 26009 26009 54.774 8.7526 1 53560000 70125 5963 46857 47881 81659 81659 0.0667435793156983 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7769470214844 2 470.776742 939.538931 1.0097 0.00047534 -0.15257 -7.1825E-05 0.85712 0.00040351 470.7765031304886 53.576 0.44561 47.772 47.544 47.99 -5.8042 65 28 3 0 0 0 0.15558 2 33910 33773;33910 85.357 21.12 1 112040000 70126 5963 46857 47881 81660;81661 81661 0.0667435793156983 VIDEPVRL 8 Unmodified _VIDEPVRL_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.776742 939.538931 0.53366 0.00025123 1.0535 0.00049595 1.5871 0.00074719 470.77720650626594 47.528 0.22048 47.489 47.319 47.54 -0.038643 -0.12381 0.001052 NaN 85.357 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 773460 70127 5963 46857 47881 0.0667435793156983 VIDINAFP 8 Unmodified _VIDINAFP_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 888.4832763671875 1 888.482545 887.475269 0.062783 5.5781E-05 1.2967 0.0011521 1.3595 0.0012079 888.4832126277319 91.16 0.47851 84.985 84.755 85.233 -6.1757 67 27 3 0 0 0 0.13832 3 60255 60121;60255;60384 89.427 11.442 1 27311000 70128 1854 46858 47882 81662;81663;81664 81663 0.02702997494475312 VIDPTDPMI 9 Unmodified _VIDPTDPMI_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MSMS AL20221201_MKP_PDAC_01 4 500.7550659179688 2 500.754618 999.494683 NaN NaN NaN NaN NaN NaN NaN 91.146 1 84.97 84.47 85.47 -6.1757 0 0 0 0.43505 1 60245 60245 18.135 5.6034 1 + 70129 23320 46859 47883 81665 81665 -0.005084142769419486 VIDQKVYEI 9 Unmodified _VIDQKVYEI_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000406934.5_1_22:38246060-38259001:+|nuORF;ENST00000476955.5_1_22:38245435-38266306:+|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.8087158203125 2 553.808239 1105.60193 -0.035049 -1.9411E-05 0.12081 6.6904E-05 0.085758 4.7494E-05 553.808457502079 44.931 0.089344 44.931 44.887 44.976 0 5 4 2 0 0 0 0.069655 1 24493 24493 40.239 10.399 1 7979800 70130 1759 46860 47884 81666 81666 0.05334878928965736 VIDSLLQYI 9 Unmodified _VIDSLLQYI_ 0 0 0 nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST nc|ENSG00000106484|Q5EB52-2|MEST nc|ENSG00000106484|Q5EB52-2|MEST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3045043945312 2 532.305332 1062.59611 0.75922 0.00040414 0.39729 0.00021148 1.1565 0.00061562 532.3055641862464 81.029 0.2272 80.536 80.334 80.561 -0.49247 14 9 2 0 0 0 0.28047 1 44331 44331 18.135 0 1 1928000 70131 2433 46861 47885 81667 81667 0.0673178041729443 VIDTGQYCKVD 11 Unmodified _VIDTGQYCKVD_ 0 0 0 REV__ENSG00000197859|ENST00000651351|ADAMTSL2 REV__ENSG00000197859|ENST00000651351|ADAMTSL2 MSMS AL20221201_MKP_PDAC_01 4 620.7994384765625 2 620.797546 1239.58054 NaN NaN NaN NaN NaN NaN NaN 40.888 1 36.28 35.78 36.78 -4.6079 0 0 0 0.24717 1 24474 24474 36.506 1.5741 1 + 70132 23961 46862 47886 81668 81668 -0.02966874162075328 VIDTIKTNPD 10 Unmodified _VIDTIKTNPD_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-3|TYMS;ENST00000581920.1_1_18:667730-672994:+|nuORF ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-SECPEP AL20221201_MKP_PDAC_01 4 557.7698974609375 2 558.300778 1114.587 1.024 0.00057167 1.6778 0.00093671 2.7017 0.0015084 558.3015793471072 91.466 0.49678 85.29 85.012 85.509 -6.1757 50 27 2 0 0 0 0.22149 1 60372 60372 20.454 5.6154 1 11354000 70133 8629 46863 47887 81669 81669 0.03429387060964473 VIDVDKNISI 10 Unmodified _VIDVDKNISI_ 0 0 0 ENST00000496846.1_1_7:30411448-30411829:+|nuORF ENST00000496846.1_1_7:30411448-30411829:+|nuORF ENST00000496846.1_1_7:30411448-30411829:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.3189697265625 2 558.318971 1114.62339 0.80999 0.00045223 0.050393 2.8135E-05 0.86038 0.00048037 558.318935302088 49.769 0.18505 49.769 49.649 49.834 0 15 8 2 0 0 0 0.52659 1 27421 27421 22.736 2.2827 1 2966700 70134 14389 46864 47888 81670 81670 0.0706626395767671 VIEAVPLQI 9 Unmodified _VIEAVPLQI_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.3030395507812 2 491.302593 980.590633 0.18309 8.9952E-05 1.1744 0.00057701 1.3575 0.00066696 491.30320948993773 87.375 0.45649 87.375 87.118 87.574 0 26 22 2 0 0 0 0.30562 1 48405 48405 16.942 4.4107 1 706200 + 70135 17313 46865 47889 81671 81671 0.09956101625471092 VIEAVPLQI 9 Unmodified _VIEAVPLQI_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.3026428222656 2 491.302593 980.590633 0.64049 0.00031468 -0.84358 -0.00041445 -0.20309 -9.9778E-05 491.30212473490406 87.905 0.38686 87.401 87.195 87.582 -0.50423 47 17 3 0 0 0 0.019303 2 48111 48017;48111 64.236 6.765 1 5897800 + 70136 17313 46865 47889 81672;81673 81673 0.09956101625471092 VIEAVPLQI 9 Unmodified _VIEAVPLQI_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.302593 980.590633 0.18309 8.9952E-05 1.1744 0.00057701 1.3575 0.00066696 491.30320948993773 87.375 0.45649 87.375 87.118 87.574 0 -0.013078 0.001495 NaN 64.236 26 22 2 NaN NaN NaN NaN 0 NaN NaN 0 706200 + 70137 17313 46865 47889 0.09956101625471092 VIEAVPLQI 9 Unmodified _VIEAVPLQI_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 491.302593 980.590633 0.64049 0.00031468 -0.84358 -0.00041445 -0.20309 -9.9778E-05 491.30212473490406 87.905 0.38686 87.401 87.195 87.582 -0.50423 0.013078 -0.00048789 NaN 64.236 47 17 3 NaN NaN NaN NaN 0 NaN NaN 0 5897800 + 70138 17313 46865 47889 0.09956101625471092 VIEGNLISL 9 Unmodified _VIEGNLISL_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2841186523438 2 479.2844 956.554247 0.53745 0.00025759 0.10322 4.947E-05 0.64067 0.00030706 479.28437108384094 72.919 0.44941 72.919 72.779 73.229 0 32 20 2 0 0 0 0.37804 1 40571 40571 13.508 0 1 573820 70139 5494 46866 47890 81674 81674 0.07423224728779587 VIEGNLISL 9 Unmodified _VIEGNLISL_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2848205566406 2 479.2844 956.554247 0.63518 0.00030443 0.62115 0.00029771 1.2563 0.00060214 479.2845464804235 73.569 0.41029 73.569 73.469 73.879 0 30 17 2 0 0 0 0.48152 1 40988 40988 8.5933 0 1 376830 70140 5494 46866 47890 81675 81675 0.07423224728779587 VIEGNLISL 9 Unmodified _VIEGNLISL_ 0 0 0 nc|ENSG00000143341|Q96RW7-2|HMCN1;ENSG00000143341|ENST00000271588|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2839660644531 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 76.989 1 76.509 76.009 77.009 -0.47945 0 0 0 0.82396 1 42150 42150 4.756 0 1 70141 5494 46866 47890 81676 81676 0.07423224728779587 VIELLQFPR 9 Unmodified _VIELLQFPR_ 0 0 0 REV__ENST00000567696.1_1_16:777676-778482:+|nuORF REV__ENST00000567696.1_1_16:777676-778482:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8331909179688 2 557.834591 1113.65463 0.458 0.00025549 0.15219 8.4898E-05 0.6102 0.00034039 557.8345318486653 77.615 0.33299 77.665 77.441 77.774 0.05011 31 13 3 0 0 0 0.21367 1 42904 42904 4.756 0 1 7297300 + 70142 28933 46867 47891 81677 81677 0.10234881782434968 VIELRYSY 8 Unmodified _VIELRYSY_ 0 0 0 REV__nc|ENSG00000155511|P42261-6|GRIA1 REV__nc|ENSG00000155511|P42261-6|GRIA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7841186523438 2 521.782025 1041.5495 NaN NaN NaN NaN NaN NaN NaN 1.5269 1 1.5269 1.0269 2.0269 0 0 0 0 0.97444 1 747 747 0.69038 0 1 + 70143 29717 46868 47892 81678 81678 0.030383405859993218 VIEQELWRGM 10 Unmodified _VIEQELWRGM_ 0 0 0 nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 nc|ENSG00000123427|Q96AZ1-2|EEF1AKMT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.8240966796875 2 630.823898 1259.63324 0.16344 0.0001031 -0.51983 -0.00032792 -0.35639 -0.00022482 630.8236156292861 101.73 0.10583 101.73 101.66 101.77 0 11 4 4 0 0 0 0.6785 1 56122 56122 5.2969 0.39987 1 1414600 70144 16165 46869 47893 81679 81679 0.013811286913551157 VIEQYNALI 9 Unmodified _VIEQYNALI_ 0 0 0 REV__ENSG00000075673|ENST00000381946|ATP12A REV__ENSG00000075673|ENST00000381946|ATP12A MSMS AL20221201_MKP_PDAC_01 4 531.7947387695312 2 531.795132 1061.57571 NaN NaN NaN NaN NaN NaN NaN 68.475 1 62.299 61.799 62.799 -6.1757 0 0 0 0.15549 1 44694 44694 36.127 7.0454 1 + 70145 17574 46870 47894 81680 81680 0.04738609757464474 VIESHIRA 8 Unmodified _VIESHIRA_ 0 0 0 REV__ENSG00000100994|ENST00000216962|PYGB REV__ENSG00000100994|ENST00000216962|PYGB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2651977539062 2 462.766709 923.518865 -0.051402 -2.3787E-05 -1.5633 -0.00072343 -1.6147 -0.00074721 462.76656050647574 34.629 0.33128 34.629 34.442 34.773 0 40 16 3 0 0 0 0.58902 1 18231 18231 26.884 0 1 8075700 + 70146 18123 46871 47895 81681 81681 0.054046069916125816 VIESHIRA 8 Unmodified _VIESHIRA_ 0 0 0 REV__ENSG00000100994|ENST00000216962|PYGB REV__ENSG00000100994|ENST00000216962|PYGB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 462.766709 923.518865 -0.051402 -2.3787E-05 -1.5633 -0.00072343 -1.6147 -0.00074721 462.76656050647574 34.629 0.33128 34.629 34.442 34.773 0 0.065976 -0.0011476 NaN 26.884 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 8075700 + 70147 18123 46871 47895 0.054046069916125816 VIEYKEKF 8 Unmodified _VIEYKEKF_ 0 0 0 ENSG00000067992|ENST00000379162|PDK3;nc|ENSG00000067992|Q15120-2|PDK3 ENSG00000067992|ENST00000379162|PDK3 ENSG00000067992|ENST00000379162|PDK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2927856445312 2 528.292225 1054.5699 NaN NaN NaN NaN NaN NaN NaN 71.708 1 71.708 71.208 72.208 0 0 0 0 0.97444 1 39938 39938 2.8892 0 1 70148 968 46872 47896 81682 81682 0.04479511245813228 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7951049804688 2 567.795132 1133.57571 0.33387 0.00018957 1.195 0.0006785 1.5288 0.00086806 567.7953710012495 69.604 0.35451 69.604 69.4 69.754 0 51 16 4 0 0 0 0.044011 2 38717 38717;38812 63.563 0 1 8116800 70149 8967 46873 47897 81683;81684 81683 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.795166015625 2 567.795132 1133.57571 0.19223 0.00010915 -0.37659 -0.00021382 -0.18435 -0.00010467 567.7948761229367 70.069 0.39498 69.59 69.382 69.777 -0.47903 65 21 4 0 0 0 0.044011 2 38246 38246;38346 63.563 0 1 34666000 70150 8967 46873 47897 81685;81686 81685 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MSMS AL20221201_MKP_PDAC_01 4 567.7962646484375 2 567.795132 1133.57571 NaN NaN NaN NaN NaN NaN NaN 80.897 1 74.721 74.221 75.221 -6.1757 0 0 0 0.083082 1 53080 53080 53.576 0 1 70151 8967 46873 47897 81687 81687 0.014266097574591186 VIFDEVHYL 9 Unmodified _VIFDEVHYL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MSMS AL20221201_MKP_PDAC_01 4 567.799072265625 2 567.795132 1133.57571 NaN NaN NaN NaN NaN NaN NaN 81.355 1 75.179 74.679 75.679 -6.1757 0 0 0 0.36957 1 53397 53397 30.225 0 1 70152 8967 46873 47897 81688 81688 0.014266097574591186 VIFFNFLIF 9 Unmodified _VIFFNFLIF_ 0 0 0 ENSG00000139173|ENST00000266534|TMEM117;ENST00000546387.1_1_12:44238454-44238748:+|nuORF ENSG00000139173|ENST00000266534|TMEM117 ENSG00000139173|ENST00000266534|TMEM117 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.330322265625 2 580.331153 1158.64775 NaN NaN NaN NaN NaN NaN NaN 40.663 1 40.668 40.168 41.168 0.0050545 0 0 0 0.84369 1 21693 21693 2.3027 0 1 70153 5131 46874 47898 81689 81689 0.07477568901845189 VIFFWVMLWFL 11 Unmodified _VIFFWVMLWFL_ 0 0 0 ENSG00000174749|ENST00000309733|FAM241A ENSG00000174749|ENST00000309733|FAM241A ENSG00000174749|ENST00000309733|FAM241A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.9435424804688 3 500.941922 1499.80394 NaN NaN NaN NaN NaN NaN NaN 40.092 1 40.097 39.597 40.597 0.0050545 0 0 0 0.94148 1 21371 21371 1.4551 0 1 70154 8453 46875 47899 81690 81690 0.0740269108080156 VIFHEPEAIEL 11 Unmodified _VIFHEPEAIEL_ 0 0 0 ENST00000482518.6_1_2:229715274-230109633:-|nuORF;ENSG00000153823|ENST00000392055|PID1;nc|ENSG00000153823|Q7Z2X4-2|PID1;nc|ENSG00000153823|Q7Z2X4|PID1 ENST00000482518.6_1_2:229715274-230109633:-|nuORF ENST00000482518.6_1_2:229715274-230109633:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.8456420898438 2 648.845353 1295.67615 -0.030565 -1.9832E-05 -0.39249 -0.00025466 -0.42305 -0.0002745 648.8453262743872 79.952 0.33752 79.952 79.752 80.089 0 35 15 3 0 0 0 0.48615 1 44410 44410 17.113 0 1 2755600 70155 6276 46876 47900 81691 81691 0.040142220204415935 VIFLLLYLT 9 Unmodified _VIFLLLYLT_ 0 0 0 ENSG00000186306|ENST00000334438|OR10T2 ENSG00000186306|ENST00000334438|OR10T2 ENSG00000186306|ENST00000334438|OR10T2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8472290039062 2 547.846636 1093.67872 NaN NaN NaN NaN NaN NaN NaN 13.815 1 13.822 13.322 14.322 0.0073986 0 0 0 0.8622 1 6824 6824 0 0 1 70156 9468 46877 47901 81692 81692 0.135627222160565 VIFMAYYQHFS 11 Unmodified _VIFMAYYQHFS_ 0 0 0 ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2251586914062 3 469.225158 1404.65364 -0.14621 -6.8607E-05 -1.3236 -0.00062108 -1.4698 -0.00068969 469.2250895336238 19.178 0.13731 19.178 19.11 19.248 0 26 8 4 0 0 0 0.63851 1 9578 9578 14.957 7.0118 1 5125300 70157 13618 46878 47902 81693 81693 -0.032497006488029 VIFMAYYQHFS 11 Unmodified _VIFMAYYQHFS_ 0 0 0 ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2248229980469 3 469.225158 1404.65364 -0.54779 -0.00025704 -0.25524 -0.00011977 -0.80303 -0.0003768 469.5595652243698 19.04 0.11462 19.063 18.992 19.106 0.023106 18 6 4 0 0 0 0.69316 1 9582 9582 2.2527 0 1 1885400 70158 13618 46878 47902 81694 81694 -0.032497006488029 VIFMAYYQHFS 11 Unmodified _VIFMAYYQHFS_ 0 0 0 ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF ENST00000457807.5_1_21:33873793-33887497:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 469.225158 1404.65364 -0.14621 -6.8607E-05 -1.3236 -0.00062108 -1.4698 -0.00068969 469.2250895336238 19.178 0.13731 19.178 19.11 19.248 0 0.057794 -0.00050511 NaN 14.957 26 8 4 NaN NaN NaN NaN 0 NaN NaN 0 5125300 70159 13618 46878 47902 -0.032497006488029 VIFVFIHL 8 Unmodified _VIFVFIHL_ 0 0 0 ENST00000545606.5_1_12:67712411-67712513:+|nuORF ENST00000545606.5_1_12:67712411-67712513:+|nuORF ENST00000545606.5_1_12:67712411-67712513:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.306396484375 2 494.304939 986.595324 3.9642 0.0019595 0.017794 8.7956E-06 3.982 0.0019683 494.3047587072586 98.364 0.41881 98.336 98.062 98.481 -0.028282 32 15 3 0 0 0 0.80975 1 54634 54634 0.79363 0 1 1636600 70160 15095 46879 47903 81695 81695 0.10149030558898176 VIFVVNLNK 9 Unmodified _VIFVVNLNK_ 0 0 0 REV__nc|ENSG00000173559|Q96AH0-3|NABP1 REV__nc|ENSG00000173559|Q96AH0-3|NABP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3243408203125 2 523.32386 1044.63317 1.021 0.00053433 -0.66252 -0.00034671 0.35851 0.00018762 523.3235158004413 99.256 0.15356 93.08 92.99 93.144 -6.1757 18 8 3 0 0 0 0.23158 1 66085 66085 20.454 0.039092 1 74503000 + 70161 29789 46880 47904 81696 81696 0.1126349675369056 VIFYLQYL 8 Unmodified _VIFYLQYL_ 0 0 0 ENST00000306999.6_1_7:16639609-16639795:-|nuORF ENST00000306999.6_1_7:16639609-16639795:-|nuORF ENST00000306999.6_1_7:16639609-16639795:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7991333007812 2 529.799686 1057.58482 0.37821 0.00020037 -2.4984 -0.0013237 -2.1202 -0.0011233 529.7982463055691 84.654 0.17736 84.654 84.542 84.719 0 13 8 2 0 0 0 0.80624 1 46925 46925 2.8892 0 1 334540 70162 11633 46881 47905 81697 81697 0.05833003113775703 VIGPMRPEQF 10 Unmodified _VIGPMRPEQF_ 0 0 0 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.8744506835938 3 391.874348 1172.60121 -0.64128 -0.0002513 0.45921 0.00017995 -0.18208 -7.1351E-05 391.87462593491585 15.912 0.097826 15.912 15.879 15.976 0 39 24 2 0 0 0 0.68719 1 7708 7708 2.086 0 1 973780 70163 16562 46882 47906 81698 81698 0.021817610082280225 VIGPMRPEQF 10 Unmodified _VIGPMRPEQF_ 0 0 0 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.2083129882812 3 391.874348 1172.60121 -0.5379 -0.00021079 0.77965 0.00030553 0.24175 9.4736E-05 391.8747400399617 16.709 0.17108 16.71 16.622 16.793 0.0010529 113 48 3 0 0 0 0.68719 1 8234 8234 2.086 0 1 1796500 70164 16562 46882 47906 81699 81699 0.021817610082280225 VIGPMRPEQF 10 Unmodified _VIGPMRPEQF_ 0 0 0 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8910217285156 3 391.874348 1172.60121 0.63484 0.00024878 -0.26731 -0.00010475 0.36753 0.00014403 391.87437441126934 17.209 0.2304 14.623 14.515 14.745 -2.5866 95 38 3 0 0 0 0.68719 1 8925 8925 2.086 0 1 7695100 70165 16562 46882 47906 81700 81700 0.021817610082280225 VIGPMRPEQF 10 Unmodified _VIGPMRPEQF_ 0 0 0 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.874348 1172.60121 -0.64128 -0.0002513 0.45921 0.00017995 -0.18208 -7.1351E-05 391.87462593491585 15.912 0.097826 15.912 15.879 15.976 0 0 0 NaN 2.086 39 24 2 NaN NaN NaN NaN 0 NaN NaN 0 973780 70166 16562 46882 47906 0.021817610082280225 VIGPMRPEQF 10 Unmodified _VIGPMRPEQF_ 0 0 0 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 nc|ENSG00000236362|Q13070|GAGE6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 391.874348 1172.60121 -0.5379 -0.00021079 0.77965 0.00030553 0.24175 9.4736E-05 391.8747400399617 16.709 0.17108 16.71 16.622 16.793 0.0010529 0 0 NaN 2.086 113 48 3 NaN NaN NaN NaN 0 NaN NaN 0 1796500 70167 16562 46882 47906 0.021817610082280225 VIGQQLVY 8 Unmodified _VIGQQLVY_ 0 0 0 REV__nc|ENSG00000136518|O96019-2|ACTL6A REV__nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 919.5261840820312 1 919.524744 918.517468 0.081509 7.495E-05 0.9737 0.00089534 1.0552 0.00097029 919.5256730501137 65.538 0.34731 65.538 65.37 65.718 0 34 13 3 0 0 0 0.2655 1 36597 36597 59.795 2.3239 1 5037400 + 70168 17600 46883 47907 81701 81701 0.054949729028635375 VIGQQLVY 8 Unmodified _VIGQQLVY_ 0 0 0 REV__nc|ENSG00000136518|O96019-2|ACTL6A REV__nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 919.52392578125 1 919.524744 918.517468 -0.16929 -0.00015567 0.20343 0.00018706 0.034139 3.1392E-05 919.5249318704291 66.022 0.34822 65.539 65.338 65.686 -0.48323 34 15 3 0 0 0 0.2655 2 35992 35992;36087 59.795 2.3239 1 14909000 + 70169 17600 46883 47907 81702;81703 81702 0.054949729028635375 VIGQQLVY 8 Unmodified _VIGQQLVY_ 0 0 0 REV__nc|ENSG00000136518|O96019-2|ACTL6A REV__nc|ENSG00000136518|O96019-2|ACTL6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2661437988281 2 460.26601 918.517468 -0.06441 -2.9646E-05 0.51599 0.00023749 0.45158 0.00020785 460.2662028251358 66.051 0.35033 65.568 65.361 65.711 -0.48323 35 16 3 0 0 0 0.24182 1 36088 36088 63.394 3.0042 1 13863000 + 70170 17600 46883 47907 81704 81704 0.054949729028635375 VIGQQLVY 8 Unmodified _VIGQQLVY_ 0 0 0 REV__nc|ENSG00000136518|O96019-2|ACTL6A REV__nc|ENSG00000136518|O96019-2|ACTL6A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.2479248046875 2 460.26601 918.517468 1.0768 0.0004956 0.80581 0.00037089 1.8826 0.00086649 460.2662634728213 71.9 0.38198 65.724 65.537 65.919 -6.1757 44 21 3 0 0 0 8.7369 1 46923 46923 34.187 18.419 1 75340000 + 70171 17600 46883 47907 81705 81705 0.054949729028635375 VIGQQLVY 8 Unmodified _VIGQQLVY_ 0 0 0 REV__nc|ENSG00000136518|O96019-2|ACTL6A REV__nc|ENSG00000136518|O96019-2|ACTL6A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 919.4876708984375 1 919.524744 918.517468 0.84931 0.00078096 3.6331 0.0033407 4.4824 0.0041216 919.5276392517935 71.888 0.28697 65.712 65.573 65.86 -6.1757 29 16 2 0 0 0 8.7369 1 47091 47091 34.187 23.363 1 39140000 + 70172 17600 46883 47907 81706 81706 0.054949729028635375 VIGRKIKISVK 11 Unmodified _VIGRKIKISVK_ 0 0 0 nc|ENSG00000079691|Q5VZK9-3|CARMIL1;nc|ENSG00000079691|Q5VZK9-2|CARMIL1;ENSG00000079691|ENST00000329474|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 nc|ENSG00000079691|Q5VZK9-3|CARMIL1 MSMS AL20221201_MKP_PDAC_01 4 414.2888793945312 3 414.286969 1239.83908 NaN NaN NaN NaN NaN NaN NaN 102.83 1 96.658 96.158 97.158 -6.1757 0 0 0 0.94293 1 68987 68987 0.40827 0.13925 1 70173 1282 46884 47908 81707 81707 0.2287506993295665 VIGVTSCI 8 Carbamidomethyl (C) _VIGVTSC(Carbamidomethyl (C))I_ VIGVTSC(1)I VIGVTSC(47)I 0 1 0 ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1 ENSG00000166342|ENST00000327305|NETO1 ENSG00000166342|ENST00000327305|NETO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.45361328125 1 848.454616 847.447339 -0.30158 -0.00025588 -4.0089 -0.0034014 -4.3105 -0.0036573 848.4512805931901 68.905 0.29509 68.424 68.309 68.604 -0.48071 21 12 2 0 0 0 0.37649 1 37748 37748 46.921 6.4723 1 1210700 70174 7474 46885 47909 81708 81708 724 0.01751351242739929 VIGWTYADMEV 11 Unmodified _VIGWTYADMEV_ 0 0 0 REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF REV__ENST00000606522.1_1_6:10744394-10747789:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.8278198242188 2 642.302464 1282.59037 0.17059 0.00010957 -0.02245 -1.442E-05 0.14814 9.5148E-05 642.3023048119423 96.399 0.31249 96.094 95.938 96.25 -0.30472 33 19 2 0 0 0 0.30605 1 52609 52609 0 0 1 536890 + 70175 29299 46886 47910 81709 81709 -0.03961686156731048 VIGYGLSVII 10 Unmodified _VIGYGLSVII_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A;REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3182373046875 2 517.318243 1032.62193 0.50188 0.00025963 -0.40874 -0.00021145 0.093131 4.8179E-05 517.3179951032507 82.711 0.68298 82.214 81.765 82.448 -0.49751 64 28 4 0 0 0 0.19662 1 45240 45240 34.102 1.797 1 8498300 + 70176 18330;21161 46887 47911 81710 81710 0.10692674659571821 VIHALTGWLP 10 Unmodified _VIHALTGWLP_ 0 0 0 ENSG00000118492|ENST00000397944|ADGB ENSG00000118492|ENST00000397944|ADGB ENSG00000118492|ENST00000397944|ADGB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.8538513183594 3 369.550082 1105.62842 0.28998 0.00010716 -0.18979 -7.0138E-05 0.10019 3.7023E-05 369.54997172920514 54.044 0.33966 53.577 53.407 53.746 -0.46664 55 16 4 0 0 0 0.23981 1 29191 29191 0.77653 0 1 79409000 70177 3375 46888 47912 81711 81711 0.07982612610931028 VIHRSKRKVL 10 Unmodified _VIHRSKRKVL_ 0 0 0 nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS nc|ENSG00000188158|Q6T4R5-4|NHS nc|ENSG00000188158|Q6T4R5-4|NHS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.4088134765625 2 618.406581 1234.79861 NaN NaN NaN NaN NaN NaN NaN 103.65 1 103.6 103.1 104.1 -0.047928 0 0 0 1.0024 1 57561 57561 0.40072 0.40072 1 70178 9632 46889 47913 81712 81712 0.19060148333232974 VIHSGWVG 8 Unmodified _VIHSGWVG_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.7298583984375 2 427.729595 853.444637 0.27241 0.00011652 0.66485 0.00028437 0.93726 0.00040089 427.7296844519521 58.892 0.20361 58.401 58.31 58.514 -0.49079 14 9 2 0 0 0 0.78849 1 32050 32050 9.3474 9.3474 1 1557500 + 70179 24424 46890 47914 81713 81713 0.012052639001012722 VIHSGWVG 8 Unmodified _VIHSGWVG_ 0 0 0 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 REV__nc|ENSG00000236320|P0C7P3-2|SLFN14 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 427.729595 853.444637 1.6 0.00068435 -1.0449 -0.00044695 0.55504 0.00023741 427.729296516245 64.387 0.26254 58.212 58.053 58.315 -6.1757 -0.094597 -0.00071469 NaN 9.3474 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 7083800 + 70180 24424 46890 47914 0.012052639001012722 VIIEKTYSL 9 Unmodified _VIIEKTYSL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2636108398438 2 533.313158 1064.61176 0.42613 0.00022726 -0.2309 -0.00012314 0.19523 0.00010412 533.312959786983 48.257 0.13414 47.895 47.801 47.935 -0.36174 9 6 2 0 0 0 0.30562 1 25904 25904 16.942 5.302 1 2335200 70181 7546 46891 47915 81714 81714 0.08204066934331422 VIIFPFVLIFF 11 Unmodified _VIIFPFVLIFF_ 0 0 0 ENSG00000197887|ENST00000641683|OR1S2;nc|ENSG00000197887|Q8NGQ3|OR1S2 ENSG00000197887|ENST00000641683|OR1S2 ENSG00000197887|ENST00000641683|OR1S2 MSMS AL20221201_MKP_PDAC_01 4 452.2787780761719 3 452.277299 1353.81007 NaN NaN NaN NaN NaN NaN NaN 91.565 1 85.389 84.889 85.889 -6.1757 0 0 0 0.9385 1 60530 60530 1.4551 0 1 70182 10017 46892 47916 81715 81715 0.14731532583982698 VIIHQYPDIF 10 Unmodified _VIIHQYPDIF_ 0 0 0 REV__ENSG00000116711|ENST00000367466|PLA2G4A REV__ENSG00000116711|ENST00000367466|PLA2G4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.840087890625 2 622.837331 1243.66011 1.574 0.00098032 1.2214 0.00076074 2.7954 0.0017411 622.8380529429857 100.43 0.11258 100.39 100.32 100.43 -0.036301 9 3 3 0 0 0 0.54684 1 55795 55795 13.906 0 1 21261000 + 70183 19061 46893 47917 81716 81716 0.04802560574216841 VIIKALVTI 9 Unmodified _VIIKALVTI_ 0 0 0 nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-15|OPRM1;nc|ENSG00000112038|P35372-12|OPRM1;nc|ENSG00000112038|P35372-14|OPRM1;nc|ENSG00000112038|P35372-13|OPRM1;nc|ENSG00000112038|P35372-11|OPRM1;nc|ENSG00000112038|P35372-2|OPRM1;nc|ENSG00000112038|P35372-8|OPRM1;ENSG00000112038|ENST00000330432|OPRM1;nc|ENSG00000112038|P35372-6|OPRM1;nc|ENSG00000112038|P35372-4|OPRM1;nc|ENSG00000112038|P35372-7|OPRM1;nc|ENSG00000112038|P35372-5|OPRM1;nc|ENSG00000112038|P35372-9|OPRM1;nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-10|OPRM1 nc|ENSG00000112038|P35372-3|OPRM1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.8128356933594 2 485.338978 968.663404 0.41499 0.00020141 -0.7753 -0.00037628 -0.36031 -0.00017487 485.33922858935256 99.717 0.11411 93.541 93.474 93.588 -6.1757 14 6 3 0 0 0 0.11012 1 66516 66516 36.044 16.605 1 25147000 70184 16122;16121 46894 47918 81717 81717 0.1778185541890025 VIKALRKRTE 10 Unmodified _VIKALRKRTE_ 0 0 0 REV__ENSG00000135577|ENST00000258042|NMBR REV__ENSG00000135577|ENST00000258042|NMBR MSMS AL20221201_MKP_PDAC_01 4 405.2659606933594 3 405.262823 1212.76664 NaN NaN NaN NaN NaN NaN NaN 104.95 1 98.774 98.274 99.274 -6.1757 0 0 0 0.99008 1 70259 70259 1.7423 0 1 + 70185 20078 46895 47919 81718 81718 0.16876735859409564 VIKECHLVI 9 Unmodified _VIKECHLVI_ 0 0 0 nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000494575.5_1_3:112730211-112738494:-|nuORF;ENST00000486271.5_1_3:112732111-112738494:-|nuORF nc|ENSG00000163608|Q6NW34-2|NEPRO nc|ENSG00000163608|Q6NW34-2|NEPRO MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3094482421875 2 527.309895 1052.60524 0.59655 0.00031457 -1.4446 -0.00076177 -0.84808 -0.0004472 527.3088552895421 62.01 0.77255 55.834 55.367 56.139 -6.1757 89 42 3 0 0 0 0.042911 1 39912 39912 48.346 8.3885 1 93456000 70186 7027 46896 47920 81719 81719 0.08103850501947818 VIKGKPIRI 9 Unmodified _VIKGKPIRI_ 0 0 0 nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 nc|ENSG00000090621|Q13310-2|PABPC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3549194335938 2 512.355494 1022.69644 NaN NaN NaN NaN NaN NaN NaN 105.15 1 105.1 104.6 105.6 -0.048737 0 0 0 0.8622 1 58357 58357 0 0 1 70187 1564 46897 47921 81720 81720 0.18599482261583944 VIKIIHLKP 9 Unmodified _VIKIIHLKP_ 0 0 0 REV__ENSG00000159212|ENST00000349499|CLIC6 REV__ENSG00000159212|ENST00000349499|CLIC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2457885742188 3 354.246222 1059.71684 NaN NaN NaN NaN NaN NaN NaN 24.743 1 24.767 24.267 25.267 0.024429 0 0 0 0.86031 1 12776 12776 0.23584 0 1 + 70188 21467 46898 47922 81721 81721 0.18936652921388486 VIKIIHLKP 9 Unmodified _VIKIIHLKP_ 0 0 0 REV__ENSG00000159212|ENST00000349499|CLIC6 REV__ENSG00000159212|ENST00000349499|CLIC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2459716796875 3 354.246222 1059.71684 NaN NaN NaN NaN NaN NaN NaN 30.205 1 30.235 29.735 30.735 0.030106 0 0 0 0.86031 1 15788 15788 0.23584 0 1 + 70189 21467 46898 47922 81722 81722 0.18936652921388486 VIKKKIILAI 10 Unmodified _VIKKKIILAI_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.2826538085938 3 380.281044 1137.8213 NaN NaN NaN NaN NaN NaN NaN 0.071851 1 0.049786 -0.45021 0.54979 -0.022065 0 0 0 1.0061 1 37 37 0 0 1 70190 7704 46899 47923 81723 81723 0.2579035467815629 VIKLEKLKRKR 11 Unmodified _VIKLEKLKRKR_ 0 0 0 ENST00000216297.6_1_14:21829121-21829307:-|nuORF ENST00000216297.6_1_14:21829121-21829307:-|nuORF ENST00000216297.6_1_14:21829121-21829307:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9920043945312 3 470.992556 1409.95584 NaN NaN NaN NaN NaN NaN NaN 18.466 1 18.472 17.972 18.972 0.0060463 0 0 0 0.9435 1 9360 9360 0 0 1 70191 11010 46900 47924 81724 81724 0.2672580815269612 VIKLQAPL 8 Unmodified _VIKLQAPL_ 0 0 0 ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1 ENST00000540712.1_1_14:50068361-50081211:+|nuORF ENST00000540712.1_1_14:50068361-50081211:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 441.2955017089844 2 441.294571 880.574589 NaN NaN NaN NaN NaN NaN NaN 42.762 1 38.077 37.577 38.577 -4.6846 0 0 0 0.83301 1 25872 25872 21.747 0 1 70192 7348 46901 47925 81725 81725 0.12952440179219593 VIKPVQNVL 9 Unmodified _VIKPVQNVL_ 0 0 0 REV__ENSG00000175390|ENST00000651655|EIF3F REV__ENSG00000175390|ENST00000651655|EIF3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.3238830566406 2 505.32386 1008.63317 -0.35809 -0.00018095 -0.12986 -6.5623E-05 -0.48795 -0.00024657 505.3239411060544 54.731 0.2555 54.264 54.104 54.36 -0.46664 21 12 2 0 0 0 0.53666 1 29688 29688 5.2307 0 1 5303200 + 70193 22868 46902 47926 81726 81726 0.12919496753693238 VIKTPVVK 8 Unmodified _VIKTPVVK_ 0 0 0 nc|ENSG00000133422|Q9Y6X9-2|MORC2;ENSG00000133422|ENST00000397641|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 nc|ENSG00000133422|Q9Y6X9-2|MORC2 MSMS AL20221201_MKP_PDAC_01 4 442.3013000488281 2 442.302396 882.590239 NaN NaN NaN NaN NaN NaN NaN 102.59 1 96.411 95.911 96.911 -6.1757 0 0 0 0.97444 1 68838 68838 2.0598 0 1 70194 4514 46903 47927 81727 81727 0.14424726696267953 VIKVTSVQY 9 Unmodified _VIKVTSVQY_ 0 0 0 ENST00000449567.6_1_11:24518651-24807587:+|nuORF ENST00000449567.6_1_11:24518651-24807587:+|nuORF ENST00000449567.6_1_11:24518651-24807587:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7365112304688 2 518.8055 1035.59645 0.43816 0.00022732 -1.0603 -0.0005501 -0.62216 -0.00032278 518.80488618028 69.082 0.20419 69.082 68.998 69.203 0 13 8 2 0 0 0 0.19496 1 38501 38501 13.906 2.2658 1 321690 70195 13503 46904 47928 81728 81728 0.08007200137149084 VILDCTPT 8 Unmodified _VILDCTPT_ 0 0 0 ENSG00000187244|ENST00000270233|BCAM;ENST00000588303.1_1_19:45312375-45314729:+|nuORF ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883361816406 2 431.222954 860.431355 0.12408 5.3505E-05 -0.35221 -0.00015188 -0.22813 -9.8377E-05 431.2230683375963 72.183 0.67728 72.183 71.756 72.433 0 52 30 3 0 0 0 8.7369 1 40191 40191 2.5775 0 1 2316400 70196 9548 46905 47929 81729 81729 -0.004443549941925085 VILDCTPT 8 Unmodified _VILDCTPT_ 0 0 0 ENSG00000187244|ENST00000270233|BCAM;ENST00000588303.1_1_19:45312375-45314729:+|nuORF ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8884887695312 2 431.222954 860.431355 0.28215 0.00012167 -1.2148 -0.00052385 -0.93267 -0.00040219 431.2227994712208 72.594 0.37543 72.594 72.387 72.762 0 30 16 3 0 0 0 8.7369 1 40410 40410 9.3474 0 1 1382800 70197 9548 46905 47929 81730 81730 -0.004443549941925085 VILDKYYFL 9 Unmodified _VILDKYYFL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.330322265625 2 587.33135 1172.64815 -0.94864 -0.00055717 0.72161 0.00042382 -0.22704 -0.00013335 587.3316526559655 77.913 0.1871 77.43 77.269 77.456 -0.4826 18 12 2 0 0 0 0.076472 1 42629 42629 49.933 24.534 1 2758000 70198 4954 46906 47930 81731 81731 0.06872943831035627 VILDKYYFL 9 Unmodified _VILDKYYFL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3314208984375 2 587.33135 1172.64815 0.27569 0.00016192 -0.28995 -0.0001703 -0.014262 -8.3763E-06 587.3315065469276 77.327 0.55154 77.378 76.959 77.51 0.050102 83 22 6 0 0 0 0.040733 2 42619 42619;42722 62.573 38.552 1 39560000 70199 4954 46906 47930 81732;81733 81732 0.06872943831035627 VILDKYYFL 9 Unmodified _VILDKYYFL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3311767578125 2 587.33135 1172.64815 1.2704 0.00074615 -1.6038 -0.00094194 -0.33336 -0.00019579 587.329931400004 95.622 0.58934 89.447 89.089 89.678 -6.1757 66 35 3 0 0 0 0.047714 1 63329 63329 49.933 18.665 1 91209000 70200 4954 46906 47930 81734 81734 0.06872943831035627 VILEGELERA 10 Unmodified _VILEGELERA_ 0 0 0 ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4 ENST00000587201.5_1_19:16187360-16198908:+|nuORF ENST00000587201.5_1_19:16187360-16198908:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8178100585938 2 564.816596 1127.61864 0.37407 0.00021128 0.52657 0.00029742 0.90064 0.00050869 564.8168143879623 46.75 0.2938 46.75 46.585 46.879 0 41 13 4 0 0 0 0.2881 1 25528 25528 38.615 9.5332 1 24196000 70201 7610 46907 47931 81735 81735 0.05993379814913169 VILEGELERA 10 Unmodified _VILEGELERA_ 0 0 0 ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4 ENST00000587201.5_1_19:16187360-16198908:+|nuORF ENST00000587201.5_1_19:16187360-16198908:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8175659179688 2 564.816596 1127.61864 1.214 0.00068569 0.63108 0.00035644 1.8451 0.0010421 564.8165155875575 52.898 0.34514 47.094 46.906 47.251 -5.8042 35 18 2 0 0 0 0.05292 2 33427 33314;33427 65.474 25.524 1 39556000 70202 7610 46907 47931 81736;81737 81737 0.05993379814913169 VILETKAP 8 Unmodified _VILETKAP_ 0 0 0 REV__nc|ENSG00000170004|Q12873-3|CHD3;REV__ENSG00000116254|ENST00000262450|CHD5 REV__nc|ENSG00000170004|Q12873-3|CHD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.751708984375 2 435.768386 869.522219 0.39694 0.00017297 -1.295 -0.00056433 -0.89809 -0.00039136 435.76771583567944 75.714 0.59941 75.762 75.309 75.909 0.047943 48 27 2 0 0 0 8.7369 1 41510 41510 0.69038 0 1 3209900 + 70203 29773;19033 46908 47932 81738 81738 0.08223857045607019 VILFLLHP 8 Unmodified _VILFLLHP_ 0 0 0 REV__ENST00000344651.4_1_12:121159601-121159766:+|nuORF REV__ENST00000344651.4_1_12:121159601-121159766:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.3065490722656 2 476.304939 950.595324 NaN NaN NaN NaN NaN NaN NaN 108.84 1 102.66 102.16 103.16 -6.1757 0 0 0 0.97444 1 72719 72719 0.79363 0 1 + 70204 25746 46909 47933 81739 81739 0.11805030558900853 VILGTDYPFP 10 Unmodified _VILGTDYPFP_ 0 0 0 nc|ENSG00000153086|Q8TDX5-2|ACMSD;ENSG00000153086|ENST00000356140|ACMSD nc|ENSG00000153086|Q8TDX5-2|ACMSD nc|ENSG00000153086|Q8TDX5-2|ACMSD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3341064453125 2 561.297507 1120.58046 0.62628 0.00035153 0.88413 0.00049626 1.5104 0.00084779 561.2977933004581 90.224 0.31887 89.722 89.586 89.905 -0.50172 31 14 3 0 0 0 0.23489 1 49271 49271 7.9102 0 1 1493000 70205 6236 46910 47934 81740 81740 0.0249949390022266 VILIVRPPF 9 Unmodified _VILIVRPPF_ 0 0 0 nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 nc|ENSG00000176273|Q2M3R5-2|SLC35G1 MSMS AL20221201_MKP_PDAC_01 4 527.3446655273438 2 527.344595 1052.67464 NaN NaN NaN NaN NaN NaN NaN 84.316 1 78.141 77.641 78.641 -6.1757 0 0 0 0.34649 1 55466 55466 18.135 0 1 70206 8581 46911 47935 81741 81741 0.15040677513025003 VILLKIKLHG 10 Unmodified _VILLKIKLHG_ 0 0 0 ENST00000443046.5_1_21:40717793-40719323:-|nuORF ENST00000443046.5_1_21:40717793-40719323:-|nuORF ENST00000443046.5_1_21:40717793-40719323:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3894653320312 2 567.392077 1132.7696 NaN NaN NaN NaN NaN NaN NaN 103.8 1 103.75 103.25 104.25 -0.048737 0 0 0 1.0061 1 57641 57641 0 0 1 70207 13417 46912 47936 81742 81742 0.2085261098418414 VILPTSSTYI 10 Unmodified _VILPTSSTYI_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.3106689453125 2 547.310615 1092.60668 0.12723 6.9632E-05 -0.13786 -7.5453E-05 -0.010636 -5.8212E-06 547.3104685331741 85.443 0.68792 79.267 78.893 79.581 -6.1757 78 42 2 0 0 0 0.31022 1 56451 56451 26.884 0.61551 1 28262000 70208 7301 46913 47937 81743 81743 0.0640776307170654 VILPTVHEV 9 Unmodified _VILPTVHEV_ 0 0 0 ENST00000487662.1_1_3:57643405-57651906:-|nuORF;ENSG00000174839|ENST00000311128|DENND6A ENST00000487662.1_1_3:57643405-57651906:-|nuORF ENST00000487662.1_1_3:57643405-57651906:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.8005065917969 2 503.800217 1005.58588 0.9079 0.0004574 -2.5804 -0.0013 -1.6725 -0.00084261 504.2991254705827 59.445 0.21464 53.33 53.237 53.452 -6.1147 16 11 2 0 0 0 0.042911 1 38235 38235 48.346 18.121 1 19483000 70209 8461 46914 47938 81744 81744 0.08331217482714237 VILQEMPLL 9 Unmodified _VILQEMPLL_ 0 0 0 REV__nc|ENSG00000153707|P23468-2|PTPRD REV__nc|ENSG00000153707|P23468-2|PTPRD MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.312255859375 2 528.312103 1054.60965 1.0276 0.0005429 -1.2956 -0.00068448 -0.268 -0.00014159 528.3113956403761 99.991 0.1152 93.815 93.755 93.87 -6.1757 13 7 2 0 0 0 0.070838 1 66784 66784 39.957 1.7818 1 19504000 + 70210 21179 46915 47939 81745 81745 0.08453314924872757 VILQKYARAWL 11 Unmodified _VILQKYARAWL_ 0 0 0 ENSG00000128833|ENST00000261839|MYO5C;ENST00000559434.1_1_15:52529600-52534394:-|nuORF;ENST00000560809.5_1_15:52521487-52536666:-|nuORF ENSG00000128833|ENST00000261839|MYO5C ENSG00000128833|ENST00000261839|MYO5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2767944335938 3 454.27484 1359.80269 NaN NaN NaN NaN NaN NaN NaN 55.592 1 55.523 55.023 56.023 -0.068737 0 0 0 0.87561 1 30216 30216 8.4443 1.3426 1 70211 4094 46916 47940 81746 81746 0.13718193036265802 VILVAMAKVFF 11 Unmodified _VILVAMAKVFF_ 0 0 0 REV__ENSG00000164180|ENST00000296595|TMEM161B REV__ENSG00000164180|ENST00000296595|TMEM161B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3721923828125 2 619.372495 1236.73044 2.099 0.0013001 -0.99618 -0.00061701 1.1029 0.00068308 619.371772792613 93.56 0.73774 93.583 93.354 94.091 0.022987 51 29 3 0 0 0 0.72952 1 51989 51989 1.4819 0.8804 1 3129400 + 70212 21887 46917 47941 81747 81747 0.12154142638337362 VILVILLGTL 10 Unmodified _VILVILLGTL_ 0 0 0 ENSG00000212126|ENST00000506868|TAS2R50 ENSG00000212126|ENST00000506868|TAS2R50 ENSG00000212126|ENST00000506868|TAS2R50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.3690795898438 2 527.367736 1052.72092 NaN NaN NaN NaN NaN NaN NaN 89.508 1 89.508 89.008 90.008 0 0 0 0 1.0061 1 49525 49525 0 0 1 70213 10412 46918 47942 81748 81748 0.19666697624484186 VIMFFGLF 8 Unmodified _VIMFFGLF_ 0 0 0 nc|ENSG00000155380|P53985-2|SLC16A1;ENSG00000155380|ENST00000369626|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 nc|ENSG00000155380|P53985-2|SLC16A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2620544433594 2 487.264425 972.514297 0.45598 0.00022218 -1.04 -0.00050674 -0.58399 -0.00028456 487.26372349837817 59.493 0.56822 59.002 58.685 59.253 -0.49079 78 26 4 0 0 0 0.80044 1 32238 32238 6.3541 0 1 19759000 70214 6386 46919 47943 81749 81749 0.026940065244957623 VIMKNDLALYF 11 Unmodified _VIMKNDLALYF_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.8616333007812 2 663.859949 1325.70534 2.6459 0.0017565 0.31205 0.00020716 2.958 0.0019637 663.8600549457478 100.01 0.11211 99.975 99.905 100.02 -0.036301 9 3 3 0 0 0 0.56638 1 55559 55559 13.042 1.4022 1 5877200 + 70215 17416 46920 47944 81750 81750 0.05552043045099708 VINGQLYEES 10 Unmodified _VINGQLYEES_ 0 0 0 ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L ENSG00000168386|ENST00000477258|FILIP1L ENSG00000168386|ENST00000477258|FILIP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5251770019531 3 384.524149 1150.55062 NaN NaN NaN NaN NaN NaN NaN 17.13 1 17.131 16.631 17.631 0.0010548 0 0 0 1.0024 1 8496 8496 0.13989 0 1 70216 7754 46921 47945 81751 81751 -0.018634898357504426 VINIIDADL 9 Unmodified _VINIIDADL_ 0 0 0 nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1 nc|ENSG00000039068|P12830-2|CDH1 nc|ENSG00000039068|P12830-2|CDH1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.3057861328125 2 493.281857 984.549162 0.56395 0.00027819 0.43505 0.0002146 0.999 0.00049279 493.28201789811897 82.558 0.44541 76.383 76.215 76.661 -6.1757 44 25 2 0 0 0 0.12183 1 54424 54424 34.102 9.4286 1 15811000 70217 639 46922 47946 81752 81752 0.05626920866131968 VINLISKVKK 10 Unmodified _VINLISKVKK_ 0 0 0 REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF REV__ENST00000510003.5_1_5:121726829-121776497:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3870239257812 2 571.386991 1140.75943 1.677 0.00095819 -1.981 -0.0011319 -0.30405 -0.00017373 571.3854473099517 104.46 0.22921 98.28 98.247 98.476 -6.1757 34 21 2 0 0 0 0.72247 1 69948 69948 0.40072 0.050084 1 9668700 + 70218 17360 46923 47947 81753 81753 0.19468003258998579 VINQFGYTFK 10 Unmodified _VINQFGYTFK_ 0 0 0 REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1 REV__nc|ENSG00000033627|Q93050-1|ATP6V0A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2171630859375 3 406.21688 1215.62881 NaN NaN NaN NaN NaN NaN NaN 72.905 1 72.947 72.447 73.447 0.041725 0 0 0 0.99388 1 40156 40156 0.56317 0.10865 1 + 70219 17157 46924 47948 81754 81754 0.02961987540129485 VIPAFPAHF 9 Unmodified _VIPAFPAHF_ 0 0 0 ENST00000497920.1_1_2:97215573-97218047:+|nuORF;nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A ENST00000497920.1_1_2:97215573-97218047:+|nuORF ENST00000497920.1_1_2:97215573-97218047:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7760314941406 2 499.776545 997.538538 -0.1742 -8.7059E-05 -0.86731 -0.00043346 -1.0415 -0.00052052 499.7759813205189 36.985 0.27007 37.007 36.904 37.174 0.021545 17 12 2 0 0 0 0.53666 1 19629 19629 5.2307 0 1 1780300 70220 14406 46925 47949 81755 81755 0.03966983002374036 VIPATYYLW 9 Unmodified _VIPATYYLW_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3024291992188 2 563.302593 1124.59063 1.0516 0.00059238 0.015919 8.9672E-06 1.0675 0.00060135 563.3026156302394 99.947 0.20918 93.771 93.703 93.912 -6.1757 27 14 2 0 0 0 0.078417 1 66717 66717 38.151 7.9264 1 41419000 70221 559 46926 47950 81756 81756 0.03332101625483119 VIPATYYLW 9 Unmodified _VIPATYYLW_ 0 0 0 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 ENSG00000025796|ENST00000369002|SEC63 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.302593 1124.59063 2.3454 0.0013212 0.10914 6.1477E-05 2.4545 0.0013827 563.8047109124907 94.039 0.26038 94.053 93.978 94.239 0.014244 0.14093 8.0897E-05 NaN 38.151 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 567080 70222 559 46926 47950 0.03332101625483119 VIPKKKLEY 9 Unmodified _VIPKKKLEY_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.2384033203125 3 373.237504 1116.69068 1.7102 0.00063831 -0.16922 -6.3158E-05 1.541 0.00057515 373.2372065072432 91.99 0.35606 85.814 85.581 85.937 -6.1757 30 20 2 0 0 0 0.10734 1 60793 60793 23.79 4.1638 1 9505700 + 70223 20837 46927 47951 81757 81757 0.1370033895927918 VIPQTLTHLHP 11 Unmodified _VIPQTLTHLHP_ 0 0 0 REV__nc|ENSG00000260001|H3BV60|TGFBR3L REV__nc|ENSG00000260001|H3BV60|TGFBR3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.86279296875 2 628.361505 1254.70846 0.96642 0.00060726 -0.03033 -1.9058E-05 0.93609 0.0005882 628.3616657255121 50.165 0.24416 44.626 44.466 44.71 -5.5391 29 15 2 0 0 0 0.56638 1 31478 31478 13.042 0.80181 1 11603000 + 70224 24575 46928 47952 81758 81758 0.09129054214145071 VIPRKKAWR 9 Unmodified _VIPRKKAWR_ 0 0 0 REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF REV__ENST00000495983.1_1_9:130670673-130672537:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 577.36767578125 2 577.369467 1152.72438 NaN NaN NaN NaN NaN NaN NaN 106.81 1 100.64 100.14 101.14 -6.1757 0 0 0 0.85798 1 71479 71479 0.52476 0 1 + 70225 20187 46929 47953 81759 81759 0.15412805241680871 VIPTHISTGSN 11 Unmodified _VIPTHISTGSN_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.2025756835938 3 375.868139 1124.58259 -0.18449 -6.9343E-05 -1.3354 -0.00050193 -1.5199 -0.00057127 375.8677390772361 21.939 0.2691 21.962 21.851 22.121 0.022894 26 11 3 0 0 0 0.66968 1 11138 11138 3.5927 0.52041 1 738790 70226 7300 46930 47954 81760 81760 0.025279226380462205 VIPVEPPS 8 Unmodified _VIPVEPPS_ 0 0 0 ENST00000487582.1_2_12:56226635-56226935:+|nuORF;ENST00000471276.5_2_12:56225132-56228769:+|nuORF ENST00000487582.1_2_12:56226635-56226935:+|nuORF ENST00000487582.1_2_12:56226635-56226935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.4777221679688 1 837.471646 836.46437 -0.0056839 -4.7601E-06 3.7408 0.0031328 3.7351 0.003128 837.474654263236 79.19 0.20464 79.19 79.121 79.326 0 15 8 2 0 0 0 0.50586 1 44007 44007 34.187 13.316 1 1012100 70227 13868 46931 47955 81761 81761 0.039595951201818025 VIQPVSPF 8 Unmodified _VIQPVSPF_ 0 0 0 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 REV__nc|ENSG00000150893|Q5SZK8-2|FREM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 886.505126953125 1 886.503281 885.496004 0.43471 0.00038537 1.128 0.00099998 1.5627 0.0013854 886.5043607552996 79.048 0.4517 72.872 72.665 73.117 -6.1757 44 24 2 0 0 0 0.23628 1 51831 51831 64.236 3.8468 1 13779000 + 70228 21041 46932 47956 81762 81762 0.0486758787413919 VIQQSHIL 8 Unmodified _VIQQSHIL_ 0 0 0 ENST00000392320.6_1_2:191895732-191895801:-|nuORF ENST00000392320.6_1_2:191895732-191895801:-|nuORF ENST00000392320.6_1_2:191895732-191895801:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.27685546875 2 469.276909 936.539266 NaN NaN NaN NaN NaN NaN NaN 75.843 1 75.843 75.343 76.343 0 0 0 0 0.97444 1 42180 42180 2.3027 0 1 70229 12668 46933 47957 81763 81763 0.06845777651415119 VIQSIKAY 8 Unmodified _VIQSIKAY_ 0 0 0 REV__nc|ENSG00000164113|Q96M93-3|ADAD1 REV__nc|ENSG00000164113|Q96M93-3|ADAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2735900878906 2 461.273835 920.533118 0.10383 4.7893E-05 -0.34492 -0.0001591 -0.2411 -0.00011121 461.2733321782124 70.462 0.48695 69.985 69.821 70.308 -0.47736 83 39 3 0 0 0 0.6895 1 38606 38606 18.135 0 1 19418000 + 70230 21871 46934 47958 81764 81764 0.0696725941988916 VIQSYTINI 9 Unmodified _VIQSYTINI_ 0 0 0 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 nc|ENSG00000120327|Q9Y5E9-2|PCDHB14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.79443359375 2 525.795132 1049.57571 0.21026 0.00011055 -3.36 -0.0017667 -3.1498 -0.0016561 525.792042538693 63.486 0.41034 63 62.864 63.274 -0.48617 28 18 3 0 0 0 0.2143 1 34657 34657 21.747 2.4897 1 1738800 70231 3509 46935 47959 81765 81765 0.05290609757457787 VIQTEPII 8 Unmodified _VIQTEPII_ 0 0 0 REV__ENSG00000213886|ENST00000377050|UBD REV__ENSG00000213886|ENST00000377050|UBD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7745971679688 2 456.773668 911.532783 NaN NaN NaN NaN NaN NaN NaN 64.56 1 64.56 64.06 65.06 0 0 0 0 0.9706 1 36006 36006 6.3541 0 1 + 70232 24295 46936 47960 81766 81766 0.07347839700048553 VIQYSVSGNL 10 Unmodified _VIQYSVSGNL_ 0 0 0 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2908325195312 2 540.290214 1078.56587 -0.19061 -0.00010298 1.3063 0.00070579 1.1157 0.0006028 540.2909513653325 32.087 0.2901 32.117 31.947 32.237 0.029743 32 12 4 0 0 0 0.5933 1 16804 16804 11.495 2.1116 1 10982000 + 70233 21991 46937 47961 81767 81767 0.029734217520854145 VIRELSRAL 9 Unmodified _VIRELSRAL_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.546875 3 352.888986 1055.64513 1.679 0.0005925 1.5365 0.00054221 3.2155 0.0011347 352.88959458093603 41.08 0.27227 36.472 36.327 36.599 -4.6079 33 16 3 0 0 0 0.18004 1 24612 24612 22.775 3.413 1 15128000 70234 1854 46938 47962 81768 81768 0.11953113496883816 VISEHVANY 9 Unmodified _VISEHVANY_ 0 0 0 ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2822875976562 2 516.261456 1030.50836 0.2264 0.00011688 -4.1654 -0.0021504 -3.939 -0.0020336 516.2596910872895 39.983 0.19632 39.983 39.853 40.049 0 15 9 2 0 0 0 0.19613 1 21407 21407 12.532 2.3482 1 1172600 70235 5713 46939 47963 81769 81769 -0.005674204534898308 VISEKPLLF 9 Unmodified _VISEKPLLF_ 0 0 0 nc|ENSG00000140280|Q8IV50-2|LYSMD2;ENSG00000140280|ENST00000267838|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.31884765625 2 523.318243 1044.62193 0.56872 0.00029762 1.0706 0.00056026 1.6393 0.00085787 523.3186567788479 64.232 0.2953 63.746 63.592 63.887 -0.48512 28 13 3 0 0 0 0.2001 1 35061 35061 23.148 7.3012 1 1251300 70236 5217 46940 47964 81770 81770 0.1014067465955577 VISEKPLLF 9 Unmodified _VISEKPLLF_ 0 0 0 nc|ENSG00000140280|Q8IV50-2|LYSMD2;ENSG00000140280|ENST00000267838|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 nc|ENSG00000140280|Q8IV50-2|LYSMD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.318243 1044.62193 0.81938 0.0004288 1.707 0.00089333 2.5264 0.0013221 523.3191849506748 63.809 0.17532 63.799 63.649 63.825 -0.010532 0.026134 0.00051713 NaN 23.148 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 939490 70237 5217 46940 47964 0.1014067465955577 VISHRQGPP 9 Unmodified _VISHRQGPP_ 0 0 0 REV__ENSG00000095564|ENST00000265990|BTAF1 REV__ENSG00000095564|ENST00000265990|BTAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.9042053222656 2 495.777608 989.540663 -0.002715 -1.346E-06 -1.1741 -0.00058209 -1.1768 -0.00058343 495.7768914156228 31.055 0.24884 31.085 30.925 31.174 0.030106 24 10 3 0 0 0 0.21473 1 16215 16215 4.3292 0.73274 1 4681300 + 70238 17944 46941 47965 81771 81771 0.04547411740179541 VISQGKIVL 9 Unmodified _VISQGKIVL_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.8113403320312 2 478.810585 955.606617 0.90059 0.00043121 -0.014484 -6.935E-06 0.88611 0.00042428 478.8106195289297 34.363 0.33031 30.268 30.089 30.419 -4.0951 27 18 2 0 0 0 0.03568 1 19785 19785 52.268 0 1 14942000 70239 1625 46942 47966 81772 81772 0.12703807862362737 VISQQSLEL 9 Unmodified _VISQQSLEL_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 508.3025817871094 2 508.784764 1015.55498 0.36221 0.00018428 -1.0133 -0.00051556 -0.65112 -0.00033128 508.78444249961456 56.299 0.48393 50.322 50.098 50.581 -5.9769 64 27 3 0 0 0 0.12771 1 35998 35998 34.402 0 1 97569000 70240 5706 46943 47967 81773 81773 0.04782019377796587 VISRHGKL 8 Unmodified _VISRHGKL_ 0 0 0 REV__nc|ENSG00000139990|Q96JK2-2|DCAF5 REV__nc|ENSG00000139990|Q96JK2-2|DCAF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2861938476562 2 455.285069 908.555585 NaN NaN NaN NaN NaN NaN NaN 70.038 1 70.038 69.538 70.538 0 0 0 0 0.95201 1 39021 39021 10.183 0 1 + 70241 20444 46944 47968 81774 81774 0.0976490360818616 VISRMLEENE 10 Unmodified _VISRMLEENE_ 0 0 0 ENSG00000185056|ENST00000340147|C5orf47 ENSG00000185056|ENST00000340147|C5orf47 ENSG00000185056|ENST00000340147|C5orf47 MSMS AL20221201_MKP_PDAC_01 4 407.2026672363281 3 407.204422 1218.59144 NaN NaN NaN NaN NaN NaN NaN 17.468 1 14.882 14.382 15.382 -2.5866 0 0 0 0.68942 1 9135 9135 10.899 3.8619 1 70242 9328 46945 47969 81775 81775 -0.009114717877764633 VISYECCPGY 10 Unmodified _VISYECCPGY_ 0 0 0 ENSG00000120708|ENST00000442011|TGFBI;ENST00000504185.5_1_5:135364744-135380547:+|nuORF ENSG00000120708|ENST00000442011|TGFBI ENSG00000120708|ENST00000442011|TGFBI MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1584777832031 3 378.492916 1132.45692 NaN NaN NaN NaN NaN NaN NaN 87.504 1 86.999 86.499 87.499 -0.50423 0 0 0 0.98914 1 47865 47865 0.77653 0 1 70243 3534 46946 47970 81776 81776 -0.10401248534049046 VISYHGEGF 9 Unmodified _VISYHGEGF_ 0 0 0 ENST00000429798.1_1_3:45721378-45730599:-|nuORF ENST00000429798.1_1_3:45721378-45730599:-|nuORF ENST00000429798.1_1_3:45721378-45730599:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.7425842285156 2 504.742899 1007.47125 NaN NaN NaN NaN NaN NaN NaN 70.106 1 70.106 69.606 70.606 0 0 0 0 0.57317 1 39064 39064 13.508 4.7625 1 70244 13222 46947 47971 81777 81777 -0.032190919992331146 VISYHGEGF 9 Unmodified _VISYHGEGF_ 0 0 0 ENST00000429798.1_1_3:45721378-45730599:-|nuORF ENST00000429798.1_1_3:45721378-45730599:-|nuORF ENST00000429798.1_1_3:45721378-45730599:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.7424011230469 2 504.742899 1007.47125 NaN NaN NaN NaN NaN NaN NaN 78.297 1 72.121 71.621 72.621 -6.1757 0 0 0 0.70111 1 51245 51245 9.3474 2.9933 1 70245 13222 46947 47971 81778 81778 -0.032190919992331146 VITAGLPA 8 Unmodified _VITAGLPA_ 0 0 0 ENST00000391919.1_1_19:46857064-46878873:+|nuORF ENST00000391919.1_1_19:46857064-46878873:+|nuORF ENST00000391919.1_1_19:46857064-46878873:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2271118164062 2 371.228897 740.44324 NaN NaN NaN NaN NaN NaN NaN 38.465 1 38.482 37.982 38.982 0.01704 0 0 0 0.97444 1 20454 20454 2.5775 0 1 70246 12659 46948 47972 81779 81779 0.06263629811314786 VITELSFG 8 Unmodified _VITELSFG_ 0 0 0 ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2;ENSG00000176681|ENST00000320254|LRRC37A;ENST00000570311.1_1_17:45097119-45126782:+|nuORF ENSG00000176809|ENST00000584306|LRRC37A3 ENSG00000176809|ENST00000584306|LRRC37A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.4642333984375 1 865.466561 864.459284 0.12554 0.00010865 -2.1182 -0.0018332 -1.9927 -0.0017246 865.4648667309762 75.985 0.29517 75.985 75.855 76.15 0 18 13 2 0 0 0 0.35156 1 42237 42237 49.669 2.748 1 1411500 70247 8613 46949 47973 81780 81780 0.02163291257579658 VITETVVEV 9 Unmodified _VITETVVEV_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ENSG00000109381|ENST00000686138|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.55517578125 1 988.556104 987.548827 0.35803 0.00035393 0.2142 0.00021174 0.57222 0.00056568 988.5565210689597 57.166 0.28275 57.166 56.998 57.281 0 18 12 2 0 0 0 0.30562 1 31744 31744 16.942 3.4344 1 1514800 70248 2645 46950 47974 81781 81781 0.054555011462980474 VITETVVEV 9 Unmodified _VITETVVEV_ 0 0 0 nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;ENSG00000109381|ENST00000686138|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF nc|ENSG00000109381|Q15723-4|ELF2 nc|ENSG00000109381|Q15723-4|ELF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7816772460938 2 494.78169 987.548827 0.50605 0.00025038 0.16158 7.9945E-05 0.66762 0.00033033 494.78171901421075 57.151 0.35436 57.151 56.947 57.301 0 39 15 3 0 0 0 0.010877 1 31847 31847 77.984 27.129 1 8994600 70249 2645 46950 47974 81782 81782 0.054555011462980474 VITGYNIQNF 10 Unmodified _VITGYNIQNF_ 0 0 0 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 ENSG00000062822|ENST00000440232|POLD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.8043823242188 2 584.803488 1167.59242 -0.5878 -0.00034375 0.86834 0.00050781 0.28055 0.00016407 584.8037960028312 36.408 0.34166 36.158 35.952 36.293 -0.2497 37 15 3 0 0 0 0.2667 1 19059 19059 34.402 34.402 1 34926000 70250 853 46951 47975 81783 81783 0.01533110643413238 VITLFVPLF 9 Unmodified _VITLFVPLF_ 0 0 0 REV__ENSG00000129048|ENST00000249887|ACKR4 REV__ENSG00000129048|ENST00000249887|ACKR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2188110351562 3 350.219561 1047.63685 NaN NaN NaN NaN NaN NaN NaN 36.663 1 36.685 36.185 37.185 0.021545 0 0 0 0.46232 1 19433 19433 17.113 8.1366 1 + 70251 19647 46952 47976 81784 81784 0.11494166527540983 VITMDERVW 9 Unmodified _VITMDERVW_ 0 0 0 ENSG00000212124|ENST00000390673|TAS2R19 ENSG00000212124|ENST00000390673|TAS2R19 ENSG00000212124|ENST00000390673|TAS2R19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.5300598144531 3 383.53047 1147.56958 -0.45814 -0.00017571 -0.01891 -7.2526E-06 -0.47705 -0.00018296 383.53039427527835 20.436 0.37009 20.436 20.255 20.625 0 72 45 2 0 0 0 0.32871 1 10303 10303 10.8 1.2555 1 2314200 70252 10411 46953 47977 81785 81785 0.0016976825429537712 VITPVLLHF 9 Unmodified _VITPVLLHF_ 0 0 0 ENSG00000175606|ENST00000312184|TMEM70;nc|ENSG00000175606|Q9BUB7-2|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.8208618164062 2 519.820953 1037.62735 -0.1854 -9.6377E-05 -0.0036138 -1.8785E-06 -0.18902 -9.8255E-05 519.8208414249722 84.575 0.27972 84.638 84.464 84.743 0.063171 18 12 2 0 0 0 0.016494 1 46828 46828 67.035 30.569 1 18972000 70253 8533 46954 47978 81786 81786 0.11004398242016578 VITPVLLHF 9 Unmodified _VITPVLLHF_ 0 0 0 ENSG00000175606|ENST00000312184|TMEM70;nc|ENSG00000175606|Q9BUB7-2|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8218383789062 2 519.820953 1037.62735 1.327 0.00068978 0.047349 2.4613E-05 1.3743 0.00071439 519.8208152772098 98.416 0.18994 92.241 92.134 92.324 -6.1757 39 12 4 0 0 0 0.0089973 1 65236 65236 86.121 44.027 1 285280000 70254 8533 46954 47978 81787 81787 0.11004398242016578 VITSLLLGTL 10 Unmodified _VITSLLLGTL_ 0 0 0 ENSG00000178394|ENST00000323865|HTR1A ENSG00000178394|ENST00000323865|HTR1A ENSG00000178394|ENST00000323865|HTR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3333129882812 2 515.33135 1028.64815 1.5221 0.00078438 0.499 0.00025715 2.0211 0.0010415 515.3318654627394 106.23 0.9032 100.05 99.702 100.61 -6.1757 266 148 3 0 0 0 0.72607 2 71175 71175;71282 0 0 1 8449000 70255 8750 46955 47979 81788;81789 81788 0.13496943831069075 VITVRRVE 8 Unmodified _VITVRRVE_ 0 0 0 REV__ENST00000607092.1_1_7:101459310-101559544:+|nuORF REV__ENST00000607092.1_1_7:101459310-101559544:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 485.7955627441406 2 486.303458 970.592364 0.91402 0.00044449 1.3211 0.00064244 2.2351 0.0010869 486.3034035580615 101.38 0.25058 95.201 95.144 95.395 -6.1757 14 12 2 0 0 0 8.7369 1 68139 68139 8.5933 0 1 5606000 + 70256 29305 46956 47980 81790 81790 0.10589155434092845 VIVHKWETH 9 Unmodified _VIVHKWETH_ 0 0 0 ENSG00000125772|ENST00000379019|GPCPD1;ENST00000433031.1_1_7:57217543-57217852:-|nuORF ENSG00000125772|ENST00000379019|GPCPD1 ENSG00000125772|ENST00000379019|GPCPD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5448913574219 3 383.545219 1147.61383 NaN NaN NaN NaN NaN NaN NaN 20.129 1 20.157 19.657 20.657 0.028357 0 0 0 0.84564 1 10179 10179 1.0715 0 1 70257 3880 46957 47981 81791 81791 0.04592540462795114 VIVSYSNL 8 Unmodified _VIVSYSNL_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4911499023438 1 894.49311 893.485833 0.16725 0.0001496 -1.1224 -0.0010039 -0.95512 -0.00085435 894.4918678902404 48.06 0.31826 48.06 47.875 48.193 0 28 15 2 0 0 0 0.21583 1 26373 26373 67.344 0 1 2936000 70258 10555 46958 47982 81792 81792 0.03482980148908155 VIVSYSNL 8 Unmodified _VIVSYSNL_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 894.494140625 1 894.49311 893.485833 0.61598 0.00055099 0.4724 0.00042256 1.0884 0.00097355 894.4932214833582 71.938 0.30403 65.763 65.556 65.86 -6.1757 27 17 2 0 0 0 0.21583 1 46985 46985 67.344 0 1 18704000 70259 10555 46958 47982 81793 81793 0.03482980148908155 VIWPSLAWL 9 Unmodified _VIWPSLAWL_ 0 0 0 REV__ENST00000399976.6_1_21:30397071-30400211:+|nuORF REV__ENST00000399976.6_1_21:30397071-30400211:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2114868164062 3 362.211177 1083.6117 1.1632 0.00042131 -0.084069 -3.0451E-05 1.0791 0.00039086 362.2111425477056 38.787 0.28589 34.337 34.237 34.523 -4.4509 31 17 2 0 0 0 0.30562 1 22921 22921 11.495 5.7113 1 24261000 + 70260 26591 46959 47983 81794 81794 0.07324111724983595 VIWVDAHTDI 10 Unmodified _VIWVDAHTDI_ 0 0 0 nc|ENSG00000118520|P05089-3|ARG1;ENSG00000118520|ENST00000368087|ARG1;nc|ENSG00000118520|P05089-2|ARG1 nc|ENSG00000118520|P05089-3|ARG1 nc|ENSG00000118520|P05089-3|ARG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8038330078125 2 584.803488 1167.59242 0.88235 0.000516 -0.03394 -1.9848E-05 0.84841 0.00049615 584.8034842531328 70.253 0.45486 70.289 70.094 70.549 0.035515 36 21 2 0 0 0 0.14688 1 38605 38605 39.957 39.957 1 18545000 70261 3379 46960 47984 81795 81795 0.01533110643413238 VIWWTPLM 8 Unmodified _VIWWTPLM_ 0 0 0 REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF REV__ENST00000546398.5_1_12:95611596-95687545:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2810668945312 2 523.280606 1044.54666 1.17 0.00061224 0.93822 0.00049095 2.1082 0.0011032 523.2817912730741 37.995 0.35134 33.626 33.334 33.686 -4.3689 45 20 3 0 0 0 0.41521 1 22284 22284 42.968 10.182 1 14271000 + 70262 17136 46961 47985 81796 81796 0.02616793927472827 VIYDDSSQY 9 Unmodified _VIYDDSSQY_ 0 0 0 ENSG00000196387|ENST00000355557|ZNF140 ENSG00000196387|ENST00000355557|ZNF140 ENSG00000196387|ENST00000355557|ZNF140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1640930175781 3 363.82935 1088.46622 0.077319 2.8131E-05 0.17874 6.503E-05 0.25606 9.3161E-05 363.830105926903 76.967 0.45583 76.967 76.759 77.215 0 80 29 4 0 0 0 0.58466 1 42743 42743 1.1933 0 1 8036000 70263 9808 46962 47986 81797 81797 -0.07447440652504156 VIYDDSSQY 9 Unmodified _VIYDDSSQY_ 0 0 0 ENSG00000196387|ENST00000355557|ZNF140 ENSG00000196387|ENST00000355557|ZNF140 ENSG00000196387|ENST00000355557|ZNF140 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 363.82935 1088.46622 -0.66706 -0.00024269 0.93866 0.00034151 0.2716 9.8816E-05 363.83052502505797 77.485 0.38887 77.002 76.827 77.215 -0.4826 0.017728 0.00050948 NaN 1.1933 56 18 4 NaN NaN NaN NaN 0 NaN NaN 0 4315000 70264 9808 46962 47986 -0.07447440652504156 VIYDLAHCCSS 11 Unmodified _VIYDLAHCCSS_ 0 0 0 REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF REV__ENST00000462668.5_1_3:160131924-160151594:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.1793823242188 3 404.17922 1209.51583 1.1347 0.00045862 0.57726 0.00023332 1.712 0.00069194 404.1794479220409 19.532 0.27393 16.875 16.713 16.987 -2.6564 75 26 4 0 0 0 0.68427 1 10321 10321 2.6312 0.72486 1 21371000 + 70265 18890 46963 47987 81798 81798 -0.08054772239711383 VIYGGLSSFI 10 Unmodified _VIYGGLSSFI_ 0 0 0 ENSG00000204442|ENST00000375915|NALF1 ENSG00000204442|ENST00000375915|NALF1 ENSG00000204442|ENST00000375915|NALF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2926635742188 2 528.292225 1054.5699 0.49556 0.0002618 0.1701 8.9861E-05 0.66566 0.00035166 528.2923546328238 72.159 0.27333 71.683 71.499 71.772 -0.47609 21 11 2 0 0 0 0.60623 1 39490 39490 10.824 0 1 2185100 70266 10285 46964 47988 81799 81799 0.04479511245813228 VIYPSPGDS 9 Unmodified _VIYPSPGDS_ 0 0 0 ENST00000451122.5_1_7:116165439-116165832:+|nuORF ENST00000451122.5_1_7:116165439-116165832:+|nuORF ENST00000451122.5_1_7:116165439-116165832:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7296447753906 2 467.729458 933.444362 NaN NaN NaN NaN NaN NaN NaN 72.673 1 72.197 71.697 72.697 -0.47588 0 0 0 0.7453 1 39771 39771 7.9102 0 1 70267 13516 46965 47989 81800 81800 -0.025022006104222783 VIYRWNKNL 9 Unmodified _VIYRWNKNL_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.82861328125 2 603.343115 1204.67168 -0.21374 -0.00012896 0.45306 0.00027335 0.23932 0.00014439 603.3431833816412 54.066 0.21783 53.999 53.863 54.081 -0.066936 17 10 2 0 0 0 0.21367 1 29302 29302 4.756 0 1 1424200 + 70268 19105 46966 47990 81801 81801 0.07752802388245073 VIYTHTRQQI 10 Unmodified _VIYTHTRQQI_ 0 0 0 REV__ENSG00000181588|ENST00000402693|MEX3D REV__ENSG00000181588|ENST00000402693|MEX3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2354736328125 3 420.234933 1257.68297 0.33907 0.00014249 0.24974 0.00010495 0.58881 0.00024744 420.2350759192503 52.996 0.60421 52.544 52.318 52.922 -0.45173 76 30 3 0 0 0 0.48505 1 28691 28691 10.899 3.4219 1 21177000 + 70269 23213 46967 47991 81802 81802 0.06443579691699597 VKADPDQQL 9 Unmodified _VKADPDQQL_ 0 0 0 REV__ENST00000465151.5_1_2:85766338-85768324:+|nuORF REV__ENST00000465151.5_1_2:85766338-85768324:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2686462402344 2 507.266739 1012.51892 0.79439 0.00040297 3.8747 0.0019655 4.6691 0.0023685 507.2687912122388 60.521 0.19545 60.521 60.407 60.603 0 15 8 2 0 0 0 0.43463 1 33789 33789 10.824 2.2306 1 843150 + 70270 22357 46968 47992 81803 81803 0.013165622009523759 VKALPSQG 8 Unmodified _VKALPSQG_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2376708984375 2 400.237253 798.459953 NaN NaN NaN NaN NaN NaN NaN 103.14 1 103.09 102.59 103.59 -0.047928 0 0 0 0.97444 1 57276 57276 0.6015 0 1 70271 7454 46969 47993 81804 81804 0.05266130697293647 VKALQYSHLVA 11 Unmodified _VKALQYSHLVA_ 0 0 0 REV__nc|ENSG00000164867|P29474-3|NOS3 REV__nc|ENSG00000164867|P29474-3|NOS3 MSMS AL20221201_MKP_PDAC_01 4 410.2392578125 3 410.239796 1227.69756 NaN NaN NaN NaN NaN NaN NaN 11.935 1 9.4526 8.9526 9.9526 -2.482 0 0 0 0.93923 1 6011 6011 3.0723 0.57378 1 + 70272 29753 46970 47994 81805 81805 0.09281651839842198 VKASEAPSPP 10 Unmodified _VKASEAPSPP_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7633361816406 2 491.763832 981.513111 -0.58787 -0.00028909 0.058151 2.8597E-05 -0.52972 -0.0002605 491.76374384390823 30.089 0.18663 30.089 29.974 30.16 0 12 8 2 0 0 0 0.48505 1 15636 15636 17.113 0 1 1816400 70273 6400 46971 47995 81806 81806 0.02161463689287757 VKCKPGPG 8 Unmodified _VKCKPGPG_ 0 0 0 nc|ENSG00000204176|Q9BQS2-4|SYT15 nc|ENSG00000204176|Q9BQS2-4|SYT15 nc|ENSG00000204176|Q9BQS2-4|SYT15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.2210693359375 2 393.220549 784.426544 -0.72328 -0.00028441 0.50673 0.00019926 -0.21654 -8.5149E-05 393.22110345703385 103.34 0.12615 103.29 103.21 103.34 -0.04792 8 4 3 0 0 0 8.7369 1 57409 57409 0 0 1 1487500 70274 16501 46972 47996 81807 81807 0.025708056537382618 VKCVAAAYL 9 Acetyl (Protein N-term),Carbamidomethyl (C) _(Acetyl (Protein N-term))VKC(Carbamidomethyl (C))VAAAYL_ VKC(1)VAAAYL VKC(42)VAAAYL 1 1 0 REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF REV__ENST00000367545.7_1_6:145173639-145173798:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7772216796875 2 518.778428 1035.5423 NaN NaN NaN NaN NaN NaN NaN 69.408 1 69.439 68.939 69.939 0.030914 0 0 0 0.10545 1 38151 38151 42.095 7.1625 1 + 70275 25990 46973 47997 81808 81808 1056 0.025952847139024016 VKDEQIEF 8 Unmodified _VKDEQIEF_ 0 0 0 REV__ENSG00000027644|ENST00000368195|INSRR REV__ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2559814453125 2 504.25584 1006.49713 -0.54444 -0.00027454 1.5531 0.00078314 1.0086 0.0005086 504.2567965774533 61.443 0.32062 60.954 60.838 61.158 -0.48932 23 14 2 0 0 0 0.79783 1 33546 33546 7.9102 0 1 2232300 + 70276 17133 46974 47998 81809 81809 -0.005862425476038879 VKDFEQTL 8 Unmodified _VKDFEQTL_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.259521484375 2 490.258382 978.502212 0.4773 0.000234 1.0556 0.00051749 1.5329 0.00075149 490.25898391410203 59.399 0.31866 58.909 58.75 59.069 -0.49079 26 14 3 0 0 0 0.58902 1 32310 32310 26.884 1.4843 1 2734300 70277 4746 46975 47999 81810 81810 0.012100613150096251 VKDFEQTL 8 Unmodified _VKDFEQTL_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 490.258382 978.502212 0.70186 0.00034409 1.3277 0.00065093 2.0296 0.00099503 490.2591978008288 59.057 0.20509 58.996 58.922 59.127 -0.060719 0.04361 0.00024142 NaN 26.884 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1518100 70278 4746 46975 47999 0.012100613150096251 VKDKTHTQII 10 Unmodified _VKDKTHTQII_ 0 0 0 REV__ENSG00000128594|ENST00000249363|LRRC4 REV__ENSG00000128594|ENST00000249363|LRRC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.2083435058594 3 394.89955 1181.67682 0.96363 0.00038054 1.0994 0.00043416 2.063 0.00081469 394.89978512255095 35.231 0.30149 31.136 30.973 31.274 -4.0951 31 17 3 0 0 0 0.23946 1 20360 20360 3.5871 0.85186 1 9491600 + 70279 19620 46976 48000 81811 81811 0.0932506146018568 VKEEREKSVL 10 Unmodified _VKEEREKSVL_ 0 0 0 REV__nc|ENSG00000079819|O43491-2|EPB41L2 REV__nc|ENSG00000079819|O43491-2|EPB41L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.90087890625 3 406.23471 1215.6823 NaN NaN NaN NaN NaN NaN NaN 31.067 1 31.097 30.597 31.597 0.030106 0 0 0 0.99008 1 16262 16262 1.7423 1.2363 1 + 70280 17655 46977 48001 81812 81812 0.08308740252005009 VKEHLILV 8 Unmodified _VKEHLILV_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.8059997558594 2 475.805303 949.596052 -0.63224 -0.00030082 0.31957 0.00015205 -0.31266 -0.00014877 475.80562649388196 106.08 0.25928 106.03 105.92 106.18 -0.048103 13 9 2 0 0 0 0.81107 1 58800 58800 0 0 1 1993800 70281 4231 46978 48002 81813 81813 0.11923825207964 VKELESTPF 9 Unmodified _VKELESTPF_ 0 0 0 REV__nc|ENSG00000011275|Q9NWF9-3|RNF216 REV__nc|ENSG00000011275|Q9NWF9-3|RNF216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2871704101562 2 525.279315 1048.54408 -0.26585 -0.00013964 -0.020965 -1.1012E-05 -0.28681 -0.00015066 525.279184506653 55.738 0.44371 55.738 55.437 55.881 0 110 35 4 0 0 0 0.1773 1 30861 30861 25.399 0 1 64927000 + 70282 17054 46979 48003 81814 81814 0.021746170035157775 VKELNTLY 8 Unmodified _VKELNTLY_ 0 0 0 REV__ENST00000519632.5_1_6:146239221-146248402:-|nuORF REV__ENST00000519632.5_1_6:146239221-146248402:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2775268554688 2 490.276575 978.538597 0.80728 0.00039579 0.2047 0.00010036 1.012 0.00049615 490.2764894836829 72.76 0.26192 72.284 72.124 72.386 -0.47588 15 11 2 0 0 0 0.80624 1 39838 39838 2.8892 0 1 938290 + 70283 28262 46980 48004 81815 81815 0.04846938211721863 VKERLDLQDGV 11 Unmodified _VKERLDLQDGV_ 0 0 0 REV__ENSG00000167880|ENST00000301607|EVPL REV__ENSG00000167880|ENST00000301607|EVPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3552856445312 2 636.351334 1270.68811 3.2093 0.0020422 1.7922 0.0011405 5.0014 0.0031827 636.3525607666372 99.821 1.4853 99.784 98.369 99.855 -0.036301 125 54 3 0 0 0 0.47711 1 55357 55357 27.223 10.11 1 56253000 + 70284 22259 46981 48005 81816 81816 0.06359838763637526 VKERLDPREL 10 Unmodified _VKERLDPREL_ 0 0 0 REV__ENST00000497315.5_1_3:64004227-64005057:-|nuORF REV__ENST00000497315.5_1_3:64004227-64005057:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8619995117188 2 627.861869 1253.70918 NaN NaN NaN NaN NaN NaN NaN 81.122 1 80.63 80.13 81.13 -0.49247 0 0 0 0.68942 1 44423 44423 17.113 0.96379 1 + 70285 21793 46982 48006 81817 81817 0.09247848863174113 VKERLDPREL 10 Unmodified _VKERLDPREL_ 0 0 0 REV__ENST00000497315.5_1_3:64004227-64005057:-|nuORF REV__ENST00000497315.5_1_3:64004227-64005057:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3653564453125 2 627.861869 1253.70918 0.19974 0.00012541 2.9456 0.0018495 3.1454 0.0019749 627.8627466801969 80.177 0.68262 80.235 80.05 80.733 0.057587 53 32 2 0 0 0 0.42143 1 44287 44287 20.415 2.0414 1 32610000 + 70286 21793 46982 48006 81818 81818 0.09247848863174113 VKEYEHLTEIM 11 Unmodified _VKEYEHLTEIM_ 0 0 0 ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENST00000451892.1_1_1:240307519-240307882:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.5666809082031 3 464.567361 1390.68025 0.87587 0.0004069 -2.2884 -0.0010631 -1.4126 -0.00065623 464.5663773788656 59.492 0.38406 53.377 53.152 53.536 -6.1147 36 20 2 0 0 0 0.51719 1 38153 38153 15.538 4.4732 1 20844000 70287 13532 46983 48007 81819 81819 0.000539434518714188 VKEYEHLTEIM 11 Unmodified _VKEYEHLTEIM_ 0 0 0 ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENST00000451892.1_1_1:240307519-240307882:-|nuORF ENST00000451892.1_1_1:240307519-240307882:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 464.567361 1390.68025 0.18839 8.7519E-05 -1.8668 -0.00086726 -1.6784 -0.00077974 464.5661827998463 53.168 0.1537 53.104 53.024 53.177 -0.063423 -0.03772 0.0010904 NaN 15.538 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2078200 70288 13532 46983 48007 0.000539434518714188 VKFIAFPSIF 10 Unmodified _VKFIAFPSIF_ 0 0 0 ENST00000354300.4_1_12:110971964-110972120:-|nuORF ENST00000354300.4_1_12:110971964-110972120:-|nuORF ENST00000354300.4_1_12:110971964-110972120:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8433837890625 2 584.841885 1167.66922 1.006 0.00058836 -0.23424 -0.00013699 0.77178 0.00045137 584.8421295148848 87.163 0.61417 80.987 80.643 81.257 -6.1757 85 33 4 0 0 0 0.42068 1 57525 57525 20.454 20.454 1 89705000 70289 12061 46984 48008 81820 81820 0.09208953930533426 VKGDVIRP 8 Unmodified _VKGDVIRP_ 0 0 0 REV__ENST00000585825.1_1_17:58888625-58888820:+|nuORF REV__ENST00000585825.1_1_17:58888625-58888820:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7698059082031 2 442.271627 882.528701 0.29295 0.00012956 -0.18393 -8.1346E-05 0.10903 4.8219E-05 442.2713166990452 63.063 0.62114 63.063 62.8 63.421 0 44 26 2 0 0 0 8.7369 1 35181 35181 5.2307 0 1 3232100 + 70290 29104 46985 48009 81821 81821 0.08273794996989636 VKGELQPFL 9 Unmodified _VKGELQPFL_ 0 0 0 REV__ENSG00000042445|ENST00000295802|RETSAT REV__ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.8004760742188 2 515.800217 1029.58588 0.24981 0.00012885 0.83789 0.00043219 1.0877 0.00056104 515.8008128251985 59.474 0.29651 58.983 58.855 59.151 -0.49079 23 13 2 0 0 0 0.51218 1 32373 32373 6.7232 0 1 1690000 + 70291 17206 46986 48010 81822 81822 0.07227217482704873 VKGGQVAF 8 Unmodified _VKGGQVAF_ 0 0 0 REV__nc|ENSG00000127922|Q6ZVN7|SEM1 REV__nc|ENSG00000127922|Q6ZVN7|SEM1 MSMS AL20221201_MKP_PDAC_01 4 403.2333679199219 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 3.827 1 1.345 0.845 1.845 -2.482 0 0 0 0.97444 1 1941 1941 0.79363 0 1 + 70292 29625 46987 48011 81823 81823 0.039341480428561226 VKGGQVAF 8 Unmodified _VKGGQVAF_ 0 0 0 REV__nc|ENSG00000127922|Q6ZVN7|SEM1 REV__nc|ENSG00000127922|Q6ZVN7|SEM1 MSMS AL20221201_MKP_PDAC_01 4 403.2328186035156 2 403.231971 804.449388 NaN NaN NaN NaN NaN NaN NaN 6.6686 1 4.1866 3.6866 4.6866 -2.482 0 0 0 0.97444 1 3369 3369 0.79363 0 1 + 70293 29625 46987 48011 81824 81824 0.039341480428561226 VKGLNGGPKRL 11 Unmodified _VKGLNGGPKRL_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.24072265625 3 380.240018 1137.69823 1.6116 0.0006128 -0.34209 -0.00013008 1.2695 0.00048273 380.2400472407841 21.663 0.545 18.928 18.775 19.32 -2.7348 76 31 4 0 0 0 0.67037 1 11719 11719 7.0371 0.40671 1 12553000 + 70294 20773 46988 48012 81825 81825 0.1348849127957692 VKGLPDFAS 9 Unmodified _VKGLPDFAS_ 0 0 0 ENST00000439661.5_1_16:457533-461575:+|nuORF;nc|ENSG00000242612|Q9NUI1-3|DECR2;ENSG00000242612|ENST00000219481|DECR2 ENST00000439661.5_1_16:457533-461575:+|nuORF ENST00000439661.5_1_16:457533-461575:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.5033569335938 1 933.504009 932.496732 0.36104 0.00033703 0.1613 0.00015057 0.52234 0.0004876 933.5038537599766 80.455 0.27165 80.455 80.296 80.568 0 24 13 2 0 0 0 0.49272 1 44614 44614 7.9102 0 1 1068900 70295 10699 46989 48013 81826 81826 0.02778382523183609 VKGRQAQI 8 Unmodified _VKGRQAQI_ 0 0 0 ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2745056152344 2 450.274701 898.534849 0.50216 0.00022611 -0.078707 -3.544E-05 0.42345 0.00019067 450.27451827360505 82.645 0.48783 82.148 81.892 82.38 -0.49751 49 20 3 0 0 0 0.80992 1 45356 45356 0.69038 0 1 4591100 70296 12975 46990 48014 81827 81827 0.08152313228504227 VKGRQAQI 8 Unmodified _VKGRQAQI_ 0 0 0 ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF ENST00000411618.1_1_9:30800054-30800297:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2752380371094 2 450.274701 898.534849 2.2384 0.0010079 -0.090625 -4.0806E-05 2.1478 0.0009671 450.27453189061936 93.333 0.38687 93.356 93.132 93.518 0.022987 32 14 3 0 0 0 0.80992 1 51863 51863 0.69038 0 1 5201300 70297 12975 46990 48014 81828 81828 0.08152313228504227 VKHCEAFLP 9 Unmodified _VKHCEAFLP_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MSMS AL20221201_MKP_PDAC_01 4 522.2705078125 2 522.27077 1042.52699 NaN NaN NaN NaN NaN NaN NaN 16.998 1 14.411 13.911 14.911 -2.5866 0 0 0 0.82739 1 8850 8850 4.3292 2.0265 1 + 70298 18723 46991 48015 81829 81829 0.007424179167173861 VKHNGVGF 8 Unmodified _VKHNGVGF_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.8915100097656 2 429.235045 856.455536 0.72929 0.00031304 1.7746 0.00076172 2.5039 0.0010748 429.2355874163104 64.808 0.30013 64.808 64.656 64.956 1.5259E-05 26 14 3 0 0 0 8.7369 1 35476 35476 0 0 1 4893800 + 70299 18580 46992 48016 81830 81830 0.021566662743907727 VKHNGVGF 8 Unmodified _VKHNGVGF_ 0 0 0 REV__ENSG00000107863|ENST00000396432|ARHGAP21 REV__ENSG00000107863|ENST00000396432|ARHGAP21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 429.235045 856.455536 0.056892 2.442E-05 0.75038 0.00032209 0.80727 0.00034651 429.2353960767823 64.97 0.23922 64.97 64.878 65.117 0 0.081076 -0.00034428 NaN 0 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1332800 + 70300 18580 46992 48016 0.021566662743907727 VKHWVKGG 8 Unmodified _VKHWVKGG_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7669067382812 2 455.766512 909.518471 NaN NaN NaN NaN NaN NaN NaN 73.913 1 73.437 72.937 73.937 -0.47588 0 0 0 0.97444 1 40453 40453 0 0 1 70301 5256 46993 48017 81831 81831 0.060092320624335116 VKIKPPKQ 8 Unmodified _VKIKPPKQ_ 0 0 0 ENSG00000119685|ENST00000298832|TTLL5;nc|ENSG00000119685|Q6EMB2-2|TTLL5 ENSG00000119685|ENST00000298832|TTLL5;nc|ENSG00000119685|Q6EMB2-2|TTLL5 ENSG00000119685|ENST00000298832|TTLL5 MSMS AL20221201_MKP_PDAC_01 4 469.2963562011719 2 469.313295 936.612037 NaN NaN NaN NaN NaN NaN NaN 104.66 1 98.482 97.982 98.982 -6.1757 0 0 0 0.97444 1 70073 70073 0.69038 0 1 70302 3455;16153 46994 48018 81832 81832 0.14119531444839595 VKIRRRIRIL 10 Unmodified _VKIRRRIRIL_ 0 0 0 nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1 nc|ENSG00000105479|Q96M63-5|ODAD1 nc|ENSG00000105479|Q96M63-5|ODAD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.964599609375 2 661.964597 1321.91464 NaN NaN NaN NaN NaN NaN NaN 30.213 1 30.243 29.743 30.743 0.030106 0 0 0 1.0061 1 15792 15792 0 0 1 70303 2327 46995 48019 81833 81833 0.2665609190391933 VKKACPMC 8 Unmodified _VKKACPMC_ 0 0 0 ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3 ENSG00000178498|ENST00000337737|DTX3 ENSG00000178498|ENST00000337737|DTX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2161865234375 2 440.216094 878.417636 0.47087 0.00020728 0.1953 8.5975E-05 0.66617 0.00029326 440.21610530067 84.819 0.49547 84.319 84.061 84.557 -0.49961 38 21 2 0 0 0 0.80975 1 46438 46438 0.79363 0 1 1133900 70304 8756 46996 48020 81834 81834 -0.02643627298618867 VKKACPMC 8 Unmodified _VKKACPMC_ 0 0 0 ENSG00000178498|ENST00000337737|DTX3;nc|ENSG00000178498|Q8N9I9-2|DTX3 ENSG00000178498|ENST00000337737|DTX3 ENSG00000178498|ENST00000337737|DTX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2161254882812 2 440.216094 878.417636 NaN NaN NaN NaN NaN NaN NaN 85.067 1 84.566 84.066 85.066 -0.5015 0 0 0 0.97444 1 46546 46546 0.79363 0 1 70305 8756 46996 48020 81835 81835 -0.02643627298618867 VKKALRVLP 9 Unmodified _VKKALRVLP_ 0 0 0 nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP nc|ENSG00000115607|O95256-2|IL18RAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.3563232421875 2 512.355494 1022.69644 1.4339 0.00073469 -3.6491 -0.0018697 -2.2152 -0.001135 512.8536513911889 105.65 0.37646 99.474 99.359 99.735 -6.1757 48 36 2 0 0 0 0.61381 1 70776 70776 0.52476 0 1 3533700 70306 3145 46997 48021 81836 81836 0.1859948226160668 VKKARCFL 8 Unmodified _VKKARCFL_ 0 0 0 ENST00000459803.5_1_3:75472114-75480048:-|nuORF;ENST00000484945.5_1_3:75472114-75480048:-|nuORF;ENST00000491583.1_1_3:75475769-75480048:-|nuORF ENST00000459803.5_1_3:75472114-75480048:-|nuORF ENST00000459803.5_1_3:75472114-75480048:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7945861816406 2 482.791672 963.568792 0.33833 0.00016334 1.3185 0.00063656 1.6568 0.0007999 482.79196832236016 24.377 0.28314 21.55 21.41 21.693 -2.8273 28 15 2 0 0 0 0.6895 1 13221 13221 18.135 0 1 4924300 70307 13633 46998 48022 81837 81837 0.08555018395918523 VKKARSVFKI 10 Unmodified _VKKARSVFKI_ 0 0 0 REV__KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant REV__KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 588.3838500976562 2 588.384783 1174.75501 NaN NaN NaN NaN NaN NaN NaN 105.66 1 99.48 98.98 99.98 -6.1757 0 0 0 0.99091 1 70779 70779 1.6526 1.0511 1 + 70308 24631 46999 48023 81838 81838 0.17462538836070962 VKKATILIS 9 Unmodified _VKKATILIS_ 0 0 0 nc|ENSG00000116183|Q9BXP8-2|PAPPA2;ENSG00000116183|ENST00000367662|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 nc|ENSG00000116183|Q9BXP8-2|PAPPA2 MSMS AL20221201_MKP_PDAC_01 4 486.8269958496094 2 486.826235 971.637917 NaN NaN NaN NaN NaN NaN NaN 109.23 1 103.06 102.56 103.56 -6.1757 0 0 0 0.8622 1 72960 72960 0 0 1 70309 3202 47000 48024 81839 81839 0.1509638089648888 VKKEVKKEIKK 11 Unmodified _VKKEVKKEIKK_ 0 0 0 ENSG00000131711|ENST00000296755|MAP1B ENSG00000131711|ENST00000296755|MAP1B ENSG00000131711|ENST00000296755|MAP1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.7155151367188 3 452.969417 1355.88642 NaN NaN NaN NaN NaN NaN NaN 16.384 1 16.385 15.885 16.885 0.0010548 0 0 0 0.9435 1 8077 8077 0 0 1 70310 4342 47001 48025 81840 81840 0.22271304413288817 VKKFAKVLK 9 Unmodified _VKKFAKVLK_ 0 0 0 REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.2458190917969 3 354.246222 1059.71684 NaN NaN NaN NaN NaN NaN NaN 24.909 1 24.909 24.409 25.409 0 0 0 0 0.8622 1 12745 12745 0 0 1 + 70311 27328 47002 48026 81841 81841 0.18936652921388486 VKKFAKVLK 9 Unmodified _VKKFAKVLK_ 0 0 0 REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2451477050781 3 354.246222 1059.71684 NaN NaN NaN NaN NaN NaN NaN 27.442 1 27.471 26.971 27.971 0.028664 0 0 0 0.8622 1 14261 14261 0 0 1 + 70312 27328 47002 48026 81842 81842 0.18936652921388486 VKKFAKVLK 9 Unmodified _VKKFAKVLK_ 0 0 0 REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF REV__ENST00000462088.1_1_3:40351432-40352571:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 354.2464599609375 3 354.246222 1059.71684 NaN NaN NaN NaN NaN NaN NaN 29.184 1 25.882 25.382 26.382 -3.3016 0 0 0 0.8622 1 16361 16361 0 0 1 + 70313 27328 47002 48026 81843 81843 0.18936652921388486 VKKFESQWH 9 Unmodified _VKKFESQWH_ 0 0 0 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 REV__nc|ENSG00000133131|Q8TE76-3|MORC4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 396.8772583007812 3 396.876857 1187.60874 0.31832 0.00012634 0.75317 0.00029891 1.0715 0.00042525 396.87717507404153 3.7186 0.12561 1.2366 1.1674 1.293 -2.482 84 52 2 0 0 0 0.21874 1 1867 1867 1.1933 0.23107 1 4192500 + 70314 19912 47003 48027 81844 81844 0.022442366001541814 VKKHKKKRVV 10 Unmodified _VKKHKKKRVV_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9;ENST00000549307.5_1_12:58109828-58113249:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.43212890625 2 625.432599 1248.85064 1.3665 0.00085464 -2.7434 -0.0017158 -1.377 -0.00086119 625.4305406931322 104.18 0.13406 98.006 97.954 98.088 -6.1757 10 9 2 0 0 0 0.72607 1 69806 69806 0 0 1 3556300 70315 4713;15149 47004 48028 81845 81845 0.23617311746943415 VKKILKKGIY 10 Unmodified _VKKILKKGIY_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14 ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS AL20221201_MKP_PDAC_01 4 397.2747192382812 3 397.272548 1188.79581 NaN NaN NaN NaN NaN NaN NaN 105.87 1 99.699 99.199 100.2 -6.1757 0 0 0 1.0047 1 70907 70907 0.15932 0.15932 1 70316 3567 47005 48029 81846 81846 0.20896880155692088 VKKIRKQMKLL 11 Unmodified _VKKIRKQMKLL_ 0 0 0 ENSG00000182272|ENST00000329962|B4GALNT4;ENST00000530717.1_1_11:369803-372772:+|nuORF ENSG00000182272|ENST00000329962|B4GALNT4 ENSG00000182272|ENST00000329962|B4GALNT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.9633178710938 2 692.962874 1383.9112 NaN NaN NaN NaN NaN NaN NaN 82.64 1 82.702 82.202 83.202 0.062004 0 0 0 0.9435 1 45719 45719 0 0 1 70317 9042 47006 48030 81847 81847 0.2345966101504473 VKKKIVPLK 9 Unmodified _VKKKIVPLK_ 0 0 0 REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF REV__ENST00000526582.1_1_11:90848103-90848802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1052.748291015625 1 1052.75541 1051.74814 0.3413 0.0003593 -3.9539 -0.0041625 -3.6126 -0.0038032 1052.7485849056532 32.978 0.13951 33.008 32.979 33.118 0.029743 6 5 2 0 0 0 0.62242 1 17318 17318 0 0 1 831130 + 70318 28372 47007 48031 81848 81848 0.2243322595547852 VKKKKKKRQRY 11 Unmodified _VKKKKKKRQRY_ 0 0 0 ENST00000358951.6_1_1:220323782-220323881:-|nuORF ENST00000358951.6_1_1:220323782-220323881:-|nuORF ENST00000358951.6_1_1:220323782-220323881:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 745.4960327148438 2 745.493719 1488.97288 NaN NaN NaN NaN NaN NaN NaN 87.557 1 87.61 87.11 88.11 0.053352 0 0 0 0.9435 1 48691 48691 0 0 1 70319 12136 47008 48032 81849 81849 0.2479572875854501 VKKKKKKSS 9 Unmodified _VKKKKKKSS_ 0 0 0 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 ENSG00000139767|ENST00000267260|SRRM4 MSMS AL20221201_MKP_PDAC_01 4 530.8623657226562 2 530.863683 1059.71281 NaN NaN NaN NaN NaN NaN NaN 105.99 1 99.813 99.313 100.31 -6.1757 0 0 0 0.8622 1 70974 70974 0 0 1 70320 5188 47009 48033 81850 81850 0.18534563427692774 VKKKKKSKD 9 Unmodified _VKKKKKSKD_ 0 0 0 ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A ENSG00000179083|ENST00000683942|FAM133A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.8612670898438 2 544.861141 1087.70773 -0.59661 -0.00032507 1.1249 0.00061292 0.52831 0.00028785 544.8617762339244 103.34 0.26292 103.29 103.14 103.4 -0.047928 22 10 3 0 0 0 0.61381 1 57349 57349 0.52476 0 1 1385600 70321 8807 47010 48034 81851 81851 0.1673825956509063 VKKKKLYLK 9 Unmodified _VKKKKLYLK_ 0 0 0 REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF REV__ENST00000237530.10_1_20:35869751-35869895:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3975830078125 2 574.399902 1146.78525 NaN NaN NaN NaN NaN NaN NaN 104.01 1 103.96 103.46 104.46 -0.048737 0 0 0 0.8622 1 57755 57755 0 0 1 + 70322 24831 47011 48035 81852 81852 0.21772897501227817 VKKKLKLIRVL 11 Unmodified _VKKKLKLIRVL_ 0 0 0 nc|ENSG00000155886|Q9UI40-2|SLC24A2;ENSG00000155886|ENST00000341998|SLC24A2 nc|ENSG00000155886|Q9UI40-2|SLC24A2 nc|ENSG00000155886|Q9UI40-2|SLC24A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.4879150390625 2 669.489582 1336.96461 NaN NaN NaN NaN NaN NaN NaN 17.917 1 17.922 17.422 18.422 0.0050564 0 0 0 0.9435 1 9059 9059 0 0 1 70323 6413 47012 48036 81853 81853 0.3096078178919015 VKKKRAKK 8 Unmodified _VKKKRAKK_ 0 0 0 REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF REV__ENST00000493902.5_1_16:31047079-31051121:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 493.3529357910156 2 493.353286 984.692019 NaN NaN NaN NaN NaN NaN NaN 105.79 1 99.618 99.118 100.12 -6.1757 0 0 0 0.97444 1 70860 70860 0 0 1 + 70324 18309 47013 48037 81854 81854 0.1990601783868442 VKKLKRFIAII 11 Unmodified _VKKLKRFIAII_ 0 0 0 ENSG00000255154|ENST00000461393|HTD2 ENSG00000255154|ENST00000461393|HTD2 ENSG00000255154|ENST00000461393|HTD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.9611206054688 2 664.960658 1327.90676 NaN NaN NaN NaN NaN NaN NaN 92.213 1 91.732 91.232 92.232 -0.48092 0 0 0 0.9435 1 50404 50404 0 0 1 70325 10787 47014 48038 81855 81855 0.25592519863812413 VKKLLAKIK 9 Unmodified _VKKLLAKIK_ 0 0 0 REV__nc|ENSG00000179915|Q9ULB1-2|NRXN1 REV__nc|ENSG00000179915|Q9ULB1-2|NRXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1041.922973632812 1 1040.75541 1039.74814 0.84757 0.00088211 -0.91991 -0.0009574 -0.072342 -7.5291E-05 1041.7584677540056 60.515 0.066563 54.367 54.324 54.391 -6.1478 4 2 2 0 0 0 0.62242 1 38944 38944 0 0 1 11440000 + 70326 23127 47015 48039 81856 81856 0.2298522595549457 VKKLSRKARKR 11 Unmodified _VKKLSRKARKR_ 0 0 0 REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.4647827148438 2 685.464961 1368.91537 NaN NaN NaN NaN NaN NaN NaN 58.887 1 58.396 57.896 58.896 -0.49079 0 0 0 0.9435 1 32030 32030 0 0 1 + 70327 19600 47016 48040 81857 81857 0.24566886552929645 VKKPKPKKA 9 Unmodified _VKKPKPKKA_ 0 0 0 REV__ENSG00000111642|ENST00000544040|CHD4 REV__ENSG00000111642|ENST00000544040|CHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8545532226562 2 512.355494 1022.69644 1.4339 0.00073469 -3.6491 -0.0018697 -2.2152 -0.001135 512.8536513911889 105.65 0.37646 99.474 99.359 99.735 -6.1757 48 36 2 0 0 0 0.61381 1 70892 70892 0.52476 0 1 3533700 + 70328 18759 47017 48041 81858 81858 0.18599482261595313 VKKQLKLRVMK 11 Unmodified _VKKQLKLRVMK_ 0 0 0 REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF REV__ENST00000373980.8_1_10:52913078-53227515:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 685.9551391601562 2 685.955049 1369.89555 1.7261 0.001184 -0.63846 -0.00043796 1.0877 0.00074609 685.9539553591462 103.44 0.047371 97.264 97.235 97.282 -6.1757 5 3 2 0 0 0 0.30605 1 69355 69355 0 0 1 2504600 + 70329 26167 47018 48042 81859 81859 0.22539374497955578 VKKRHRRQRR 10 Unmodified _VKKRHRRQRR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9715270996094 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 1.0853 1 -1.3966 -1.8966 -0.89662 -2.482 0 0 0 1.0061 1 567 567 0 0 1 70330 5582 47019 48043 81860 81860 0.19925885558996015 VKKRHRRQRR 10 Unmodified _VKKRHRRQRR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9710693359375 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 7.4343 1 4.9523 4.4523 5.4523 -2.482 0 0 0 1.0061 1 3751 3751 0 0 1 70331 5582 47019 48043 81861 81861 0.19925885558996015 VKKRHRRQRR 10 Unmodified _VKKRHRRQRR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9714050292969 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 12.912 1 10.43 9.9298 10.93 -2.482 0 0 0 1.0061 1 6536 6536 0 0 1 70332 5582 47019 48043 81862 81862 0.19925885558996015 VKKRHRRQRR 10 Unmodified _VKKRHRRQRR_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 473.9711303710938 3 473.97126 1418.89195 NaN NaN NaN NaN NaN NaN NaN 13.149 1 10.667 10.167 11.167 -2.482 0 0 0 1.0061 1 6662 6662 0 0 1 70333 5582 47019 48043 81863 81863 0.19925885558996015 VKKRKKAVLF 10 Unmodified _VKKRKKAVLF_ 0 0 0 ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF ENSG00000172757|ENST00000308162|CFL1 ENSG00000172757|ENST00000308162|CFL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.9165649414062 2 608.91625 1215.81795 0.58404 0.00035563 0.25697 0.00015647 0.84101 0.00051211 608.9162044396566 77.668 0.39529 71.492 71.273 71.668 -6.1757 37 22 2 0 0 0 0.70951 2 50729 50729;50861 1.8442 0 1 18837000 70334 8252 47020 48044 81864;81865 81864 0.21867104624107014 VKKRKKKQ 8 Unmodified _VKKRKKKQ_ 0 0 0 REV__ENST00000470309.5_1_7:91870289-91871464:-|nuORF REV__ENST00000470309.5_1_7:91870289-91871464:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1042.890869140625 1 1042.72076 1041.71348 0.67776 0.00070671 -1.0719 -0.0011177 -0.39415 -0.00041099 1042.7204007426637 49.073 0.28808 49.03 48.927 49.215 -0.04369 16 13 2 0 0 0 8.7369 1 26550 26550 0 0 1 2348300 + 70335 16932 47021 48045 81866 81866 0.19429402867399403 VKKRKKKQ 8 Unmodified _VKKRKKKQ_ 0 0 0 REV__ENST00000470309.5_1_7:91870289-91871464:-|nuORF REV__ENST00000470309.5_1_7:91870289-91871464:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1042.72076 1041.71348 -0.62862 -0.00065548 -1.443 -0.0015047 -2.0717 -0.0021602 1043.7189685721821 48.975 0.093712 48.975 48.91 49.004 0 -0.027254 -0.00032129 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3042700 + 70336 16932 47021 48045 0.19429402867399403 VKKRRRTK 8 Unmodified _VKKRRRTK_ 0 0 0 REV__ENSG00000070047|ENST00000264555|PHRF1 REV__ENSG00000070047|ENST00000264555|PHRF1 MSMS AL20221201_MKP_PDAC_01 4 357.9126892089844 3 357.912236 1070.71488 NaN NaN NaN NaN NaN NaN NaN 3.9883 1 1.5063 1.0063 2.0063 -2.482 0 0 0 0.97444 1 2022 2022 0 0 1 + 70337 17462 47022 48046 81867 81867 0.18235036956139083 VKKSDFEVF 9 Unmodified _VKKSDFEVF_ 0 0 0 nc|ENSG00000131791|O43741-2|PRKAB2;ENSG00000131791|ENST00000254101|PRKAB2 nc|ENSG00000131791|O43741-2|PRKAB2 nc|ENSG00000131791|O43741-2|PRKAB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7955932617188 2 549.795132 1097.57571 0.19855 0.00010916 2.2123 0.0012163 2.4109 0.0013255 550.2976540363384 57.969 0.3873 51.942 51.753 52.14 -6.0275 30 21 2 0 0 0 0.08691 1 37043 37043 36.127 0 1 34007000 70338 4352 47023 48047 81868 81868 0.03082609757461796 VKKWHLAD 8 Unmodified _VKKWHLAD_ 0 0 0 REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2 REV__nc|ENSG00000119402|Q9UKT8-2|FBXW2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3347473144531 2 498.784902 995.55525 0.77243 0.00038528 1.4603 0.00072839 2.2328 0.0011137 498.78559131363244 80.856 0.3589 80.913 80.703 81.062 0.057587 35 13 3 0 0 0 8.7369 1 44760 44760 2.5775 0 1 14804000 + 70339 19189 47024 48048 81869 81869 0.05729483888319464 VKLFASVVKE 10 Unmodified _VKLFASVVKE_ 0 0 0 REV__ENSG00000100401|ENST00000356244|RANGAP1 REV__ENSG00000100401|ENST00000356244|RANGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.8977661132812 3 373.897258 1118.66995 1.1097 0.00041492 0.25101 9.3852E-05 1.3607 0.00050877 373.89720722923 29.702 0.30996 26.4 26.257 26.567 -3.3016 38 16 3 0 0 0 0.087164 1 16792 16792 43.477 2.1298 1 120530000 + 70340 18062 47025 48049 81870 81870 0.11535748579603933 VKLFFKCIDT 10 Unmodified _VKLFFKCIDT_ 0 0 0 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 REV__nc|ENSG00000129515|Q9UNH7-2|SNX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2274780273438 3 405.226499 1212.65767 1.3663 0.00055368 -2.9067 -0.0011779 -1.5404 -0.0006242 405.2260841509269 94.268 0.37064 88.092 87.88 88.25 -6.1757 26 21 2 0 0 0 0.69626 1 62434 62434 3.3196 1.99 1 5783700 + 70341 19670 47026 48050 81871 81871 0.059843888449222504 VKLIPAVLHL 10 Unmodified _VKLIPAVLHL_ 0 0 0 ENST00000486291.1_1_2:202262833-202263061:-|nuORF;ENST00000332624.7_1_2:202262293-202264107:-|nuORF ENST00000486291.1_1_2:202262833-202263061:-|nuORF ENST00000486291.1_1_2:202262833-202263061:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8692626953125 2 551.870977 1101.7274 -0.57303 -0.00031624 -3.5493 -0.0019587 -4.1223 -0.002275 551.8694927571212 103.59 0.28899 103.54 103.38 103.67 -0.047928 15 11 2 0 0 0 0.72196 1 57545 57545 0.45834 0.45834 1 3213800 70342 11872 47027 48051 81872 81872 0.18060635575852757 VKLKFEKVY 9 Unmodified _VKLKFEKVY_ 0 0 0 nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L;ENST00000462119.5_1_6:111628768-111636625:-|nuORF nc|ENSG00000009413|O60673-2|REV3L nc|ENSG00000009413|O60673-2|REV3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.2356872558594 3 385.237504 1152.69068 0.67228 0.00025899 -1.4596 -0.0005623 -0.78734 -0.00030331 385.2352562948314 29.975 0.25267 29.895 29.746 29.999 -0.080431 22 9 4 0 0 0 0.61381 1 15573 15573 0.23584 0 1 1554200 70343 403 47028 48052 81873 81873 0.12044338959276502 VKLKLKRHR 9 Unmodified _VKLKLKRHR_ 0 0 0 ENST00000344726.9_2_6:79911421-79912012:-|nuORF ENST00000344726.9_2_6:79911421-79912012:-|nuORF ENST00000344726.9_2_6:79911421-79912012:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.4033813476562 2 589.403841 1176.79313 NaN NaN NaN NaN NaN NaN NaN 103.8 1 103.76 103.26 104.26 -0.048737 0 0 0 0.8622 1 57643 57643 0 0 1 70344 12020 47029 48053 81874 81874 0.21180469541377533 VKLKRQLTF 9 Unmodified _VKLKRQLTF_ 0 0 0 REV__ENSG00000182645|ENST00000333254|CCDC172 REV__ENSG00000182645|ENST00000333254|CCDC172 MSMS AL20221201_MKP_PDAC_01 4 567.3493041992188 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 109.86 1 103.69 103.19 104.19 -6.1757 0 0 0 0.85798 1 73346 73346 0.52476 0 1 + 70345 23287 47030 48054 81875 81875 0.1522256342768742 VKLLKRQAKR 10 Unmodified _VKLLKRQAKR_ 0 0 0 REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.4208374023438 2 620.422231 1238.82991 NaN NaN NaN NaN NaN NaN NaN 89.329 1 89.329 88.829 89.829 0 0 0 0 1.0061 1 49429 49429 0 0 1 + 70346 29392 47031 48055 81876 81876 0.2200472136728422 VKLLKRQAKR 10 Unmodified _VKLLKRQAKR_ 0 0 0 REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant REV__INO80E|p.S47P|1|0.12|ENSG00000169592|chr16:29996604-29996604|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.076904296875 2 620.422231 1238.82991 NaN NaN NaN NaN NaN NaN NaN 90.454 1 90.454 89.954 90.954 0 0 0 0 1.0061 1 50043 50043 0 0 1 + 70347 29392 47031 48055 81877 81877 0.2200472136728422 VKLLPLGAT 9 Unmodified _VKLLPLGAT_ 0 0 0 ENST00000526234.1_1_19:17530944-17533268:+|nuORF;nc|ENSG00000141971|Q96EY5-2|MVB12A;nc|ENSG00000141971|Q96EY5-3|MVB12A;ENSG00000141971|ENST00000317040|MVB12A ENST00000526234.1_1_19:17530944-17533268:+|nuORF ENST00000526234.1_1_19:17530944-17533268:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 911.59326171875 1 911.59243 910.585153 1.182 0.0010775 0.13541 0.00012344 1.3174 0.001201 911.5922090199218 105.24 0.32796 99.066 98.841 99.169 -6.1757 198 65 4 0 0 0 0.61381 1 70480 70480 0.52476 0 1 1891499999.9999998 70348 5385 47032 48056 81878 81878 0.1262842283365444 VKLVKKVKKLK 11 Unmodified _VKLVKKVKKLK_ 0 0 0 ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF ENST00000496806.2_1_6:87865339-87969852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.9841918945312 2 655.984133 1309.95371 NaN NaN NaN NaN NaN NaN NaN 15.647 1 15.647 15.147 16.147 0 0 0 0 0.9435 1 7555 7555 0 0 1 70349 14388 47033 48057 81879 81879 0.3111337941493275 VKLWLQKIERL 11 Unmodified _VKLWLQKIERL_ 0 0 0 ENST00000267622.8_2_14:92465647-92465686:-|nuORF ENST00000267622.8_2_14:92465647-92465686:-|nuORF ENST00000267622.8_2_14:92465647-92465686:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 713.4501953125 2 713.450654 1424.88676 NaN NaN NaN NaN NaN NaN NaN 108.03 1 107.98 107.48 108.48 -0.047607 0 0 0 0.9435 1 59837 59837 0 0 1 70350 11350 47034 48058 81880 81880 0.1913072413315149 VKMKAPWL 8 Unmodified _VKMKAPWL_ 0 0 0 ENST00000469973.1_1_1:228329025-228329082:+|nuORF ENST00000469973.1_1_1:228329025-228329082:+|nuORF ENST00000469973.1_1_1:228329025-228329082:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.7884216308594 2 486.788598 971.562644 NaN NaN NaN NaN NaN NaN NaN 14.616 1 14.585 14.085 15.085 -0.030868 0 0 0 0.97444 1 7123 7123 0.79363 0.10326 1 70351 13846 47035 48059 81881 81881 0.07572500164371831 VKMKCPDG 8 Unmodified _VKMKCPDG_ 0 0 0 nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT nc|ENSG00000147162|O15294-2|OGT nc|ENSG00000147162|O15294-2|OGT MULTI-MSMS AL20221201_MKP_PDAC_01 4 877.4307250976562 1 877.427021 876.419744 1.5183 0.0013322 -0.1855 -0.00016276 1.3328 0.0011694 877.4287547816942 108.65 0.47056 102.47 102.21 102.68 -6.1757 134 70 3 0 0 0 0.80992 1 72569 72569 0.69038 0 1 3570500 70352 5828 47036 48060 81882 81882 -0.023408752891555196 VKMKNAHL 8 Unmodified _VKMKNAHL_ 0 0 0 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7723388671875 2 470.77348 939.532406 0.56334 0.00026521 -1.5635 -0.00073605 -1.0001 -0.00047084 470.77246277581327 66.968 0.3138 66.968 66.795 67.108 0 26 14 2 0 0 0 0.80676 1 37298 37298 2.5775 1.7838 1 1125500 70353 2982 47037 48061 81883 81883 0.06022141499192912 VKMLRCRL 8 Unmodified _VKMLRCRL_ 0 0 0 REV__nc|ENSG00000147536|Q9BRT9-2|GINS4 REV__nc|ENSG00000147536|Q9BRT9-2|GINS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8029174804688 2 509.804257 1017.59396 0.22002 0.00011217 -0.28904 -0.00014735 -0.069018 -3.5186E-05 509.8041223704475 89.124 0.40369 88.619 88.416 88.819 -0.50423 47 17 4 0 0 0 0.80975 1 48656 48656 0.79363 0 1 3445300 + 70354 29691 47038 48062 81884 81884 0.08586749926837456 VKNMLYVLY 9 Unmodified _VKNMLYVLY_ 0 0 0 ENSG00000109181|ENST00000265403|UGT2B10 ENSG00000109181|ENST00000265403|UGT2B10 ENSG00000109181|ENST00000265403|UGT2B10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8180541992188 2 571.817553 1141.62055 1.3696 0.00078318 -0.3436 -0.00019648 1.026 0.00058671 571.8177452148378 79.373 1.0942 73.197 72.37 73.464 -6.1757 178 64 4 0 0 0 0.30562 1 51944 51944 16.942 0 1 61651000 70355 2638 47039 48063 81885 81885 0.05540717299163589 VKNNFKDLMS 10 Unmodified _VKNNFKDLMS_ 0 0 0 nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19;ENSG00000119403|ENST00000373896|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2090454101562 3 399.209508 1194.60669 -0.22889 -9.1376E-05 -0.98023 -0.00039132 -1.2091 -0.00048269 399.20907170202446 34.016 0.24891 33.824 33.668 33.917 -0.19131 22 9 4 0 0 0 0.71276 1 17744 17744 0.62683 0 1 2593100 70356 3432 47040 48064 81886 81886 0.017174398000406654 VKNNFKDLMS 10 Unmodified _VKNNFKDLMS_ 0 0 0 nc|ENSG00000119403|Q5T6S3-3|PHF19;nc|ENSG00000119403|Q5T6S3-2|PHF19;ENSG00000119403|ENST00000373896|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 nc|ENSG00000119403|Q5T6S3-3|PHF19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 399.209508 1194.60669 -0.069705 -2.7827E-05 -1.3401 -0.00053498 -1.4098 -0.00056281 399.20920857193545 33.768 0.16746 33.797 33.648 33.816 0.028934 -0.013699 -0.00034915 NaN 0.62683 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 738450 70357 3432 47040 48064 0.017174398000406654 VKNPFHTA 8 Unmodified _VKNPFHTA_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2482299804688 2 457.248152 912.481751 1.174 0.00053681 -0.19336 -8.8414E-05 0.98065 0.0004484 457.2480111344133 30.653 0.49802 27.156 26.915 27.413 -3.497 73 23 4 0 0 0 0.63229 1 17349 17349 23.148 3.7094 1 479390000 70358 7301 47041 48065 81887 81887 0.02200935445853247 VKPEVKVKI 9 Unmodified _VKPEVKVKI_ 0 0 0 nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 nc|ENSG00000107099|Q8NF50-2|DOCK8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 519.8207397460938 2 520.347335 1038.68012 1.4664 0.00076304 -0.27573 -0.00014348 1.1907 0.00061956 520.3473481767363 96.627 0.21841 90.451 90.354 90.572 -6.1757 20 12 2 0 0 0 0.18811 1 64029 64029 12.241 0 1 15037000 70359 2473 47042 48066 81888 81888 0.1623235630486306 VKPKAEALR 9 Unmodified _VKPKAEALR_ 0 0 0 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 REV__nc|ENSG00000146122|Q86T65-4|DAAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.3181762695312 2 506.319109 1010.62366 1.5218 0.00077053 -1.4508 -0.00073456 0.071051 3.5975E-05 506.31826948129617 103.65 0.17436 97.471 97.358 97.533 -6.1757 44 35 2 0 0 0 0.59218 1 69474 69474 1.8442 0 1 5097500 + 70360 20812 47043 48067 81889 81889 0.1187772846816415 VKPLGKLLRLL 11 Unmodified _VKPLGKLLRLL_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA REV__ENSG00000241973|ENST00000255882|PI4KA MSMS AL20221201_MKP_PDAC_01 4 417.2967834472656 3 417.295464 1248.86456 NaN NaN NaN NaN NaN NaN NaN 104.82 1 98.649 98.149 99.149 -6.1757 0 0 0 0.9435 1 70171 70171 0 0 1 + 70361 24456 47044 48068 81890 81890 0.2500854445540881 VKPLLQNT 8 Unmodified _VKPLLQNT_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 456.780517578125 2 456.779285 911.544017 NaN NaN NaN NaN NaN NaN NaN 105.7 1 99.52 99.02 100.02 -6.1757 0 0 0 0.97444 1 70802 70802 2.5775 0 1 70362 6480 47045 48069 81891 81891 0.08470661794183343 VKPLLRVKPL 10 Unmodified _VKPLLRVKPL_ 0 0 0 REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF REV__ENST00000573951.1_1_16:3313772-3314576:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.2742309570312 3 388.27266 1161.79615 NaN NaN NaN NaN NaN NaN NaN 107.66 1 101.49 100.99 101.99 -6.1757 0 0 0 1.0061 1 71994 71994 0 0 1 + 70363 29000 47046 48070 81892 81892 0.2217229987556948 VKPRVNSL 8 Unmodified _VKPRVNSL_ 0 0 0 ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW ENSG00000068394|ENST00000156109|GPKOW MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.7847595214844 2 456.784902 911.55525 NaN NaN NaN NaN NaN NaN NaN 20.07 1 20.098 19.598 20.598 0.028357 0 0 0 0.97444 1 10148 10148 2.3027 1.5091 1 70364 979 47047 48071 81893 81893 0.09593483888329501 VKPVRKVQ 8 Unmodified _VKPVRKVQ_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Q894Cfs*18|1|0.1|ENSG00000135837|chr1:180020453-180020459|TCAGAAG/-|frameshift_variant ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.2677001953125 2 477.316369 952.618185 -0.6067 -0.00028959 0.69368 0.0003311 0.086975 4.1515E-05 477.3169436357568 103.51 0.23644 103.46 103.36 103.59 -0.04792 15 9 2 0 0 0 8.7369 1 57426 57426 0.69038 0 1 1780700 70365 4746 47048 48072 81894 81894 0.13998049676376922 VKQHFMKM 8 Unmodified _VKQHFMKM_ 0 0 0 ENSG00000166454|ENST00000299575|ATMIN;ATMIN|p.S500Nfs*12|1|0.07|ENSG00000166454|chr16:81043997-81044019|GTCCAACGGATGACCATGTACAG/-|frameshift_variant ENSG00000166454|ENST00000299575|ATMIN ENSG00000166454|ENST00000299575|ATMIN MSMS AL20221201_MKP_PDAC_01 4 524.777099609375 2 524.775165 1047.53578 NaN NaN NaN NaN NaN NaN NaN 22.362 1 19.627 19.127 20.127 -2.7348 0 0 0 0.90769 1 12024 12024 18.135 0 1 70366 7492 47049 48073 81895 81895 0.01391068281554908 VKQKRRRRKHR 11 Unmodified _VKQKRRRRKHR_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.6693725585938 3 516.669581 1546.98691 NaN NaN NaN NaN NaN NaN NaN 0.093967 1 0.093967 -0.40603 0.59397 0 0 0 0 0.9435 1 46 46 0 0 1 + 70367 21587 47050 48074 81896 81896 0.2352981903015916 VKQKVKRQLTK 11 Unmodified _VKQKVKRQLTK_ 0 0 0 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 ENSG00000058729|ENST00000283109|RIOK2 MSMS AL20221201_MKP_PDAC_01 4 678.44580078125 2 678.445903 1354.87725 NaN NaN NaN NaN NaN NaN NaN 103.29 1 97.11 96.61 97.61 -6.1757 0 0 0 0.94184 1 69259 69259 1.1933 0.88631 1 70368 807 47051 48075 81897 81897 0.21400955847639125 VKRIFTHRVKR 11 Unmodified _VKRIFTHRVKR_ 0 0 0 REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.6412963867188 3 480.640516 1438.89972 1.6778 0.00080641 -0.082965 -3.9876E-05 1.5948 0.00076653 480.6403091552288 104.24 0.10536 98.06 98.001 98.107 -6.1757 9 5 2 0 0 0 0.7453 1 69822 69822 0 0 1 55558000 + 70369 20115 47052 48076 81898 81898 0.197826000358873 VKRIFTHRVKR 11 Unmodified _VKRIFTHRVKR_ 0 0 0 REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF REV__ENST00000466012.5_1_2:219142848-219157252:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 720.457275390625 2 720.457136 1438.89972 1.3766 0.00099176 -0.10161 -7.3208E-05 1.275 0.00091855 720.4566736219209 104.97 0.17347 98.797 98.693 98.867 -6.1757 49 12 5 0 0 0 0.7453 1 70233 70233 0 0 1 655880000 + 70370 20115 47052 48076 81899 81899 0.197826000358873 VKRKIAKRH 9 Unmodified _VKRKIAKRH_ 0 0 0 ENST00000524003.1_1_8:92080574-92080604:-|nuORF ENST00000524003.1_1_8:92080574-92080604:-|nuORF ENST00000524003.1_1_8:92080574-92080604:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.3822631835938 2 568.380366 1134.74618 1.7069 0.00097015 -0.11105 -6.3119E-05 1.5958 0.00090703 568.3803150201945 103.19 0.15913 97.014 96.943 97.102 -6.1757 88 45 3 0 0 0 0.62242 1 69190 69190 0 0 1 11504000 70371 14771 47053 48077 81900 81900 0.184196099902465 VKRLLKLHK 9 Unmodified _VKRLLKLHK_ 0 0 0 ENST00000598485.6_2_19:41246882-41255486:-|nuORF;ENSG00000188493|ENST00000378313|ACTMAP ENST00000598485.6_2_19:41246882-41255486:-|nuORF ENST00000598485.6_2_19:41246882-41255486:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3627319335938 2 567.895318 1133.77608 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.68 103.18 104.18 -0.048683 0 0 0 0.8622 1 57602 57602 0 0 1 70372 9663 47054 48078 81901 81901 0.21454548935571438 VKRLLKLHK 9 Unmodified _VKRLLKLHK_ 0 0 0 ENST00000598485.6_2_19:41246882-41255486:-|nuORF;ENSG00000188493|ENST00000378313|ACTMAP ENST00000598485.6_2_19:41246882-41255486:-|nuORF ENST00000598485.6_2_19:41246882-41255486:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3560180664062 2 567.895318 1133.77608 NaN NaN NaN NaN NaN NaN NaN 103.77 1 103.72 103.22 104.22 -0.048737 0 0 0 0.8622 1 57624 57624 0 0 1 70373 9663 47054 48078 81902 81902 0.21454548935571438 VKRRNDENK 9 Unmodified _VKRRNDENK_ 0 0 0 REV__nc|ENSG00000163629|Q12923-2|PTPN13 REV__nc|ENSG00000163629|Q12923-2|PTPN13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.2373352050781 3 386.882782 1157.62652 0.12131 4.6934E-05 1.4355 0.00055537 1.5568 0.0006023 386.8843852380887 51.833 0.35108 51.774 51.632 51.983 -0.058918 22 16 2 0 0 0 0.21819 1 27990 27990 1.0715 0 1 1404900 + 70374 21792 47055 48079 81903 81903 0.05400951855017411 VKRSSARL 8 Unmodified _VKRSSARL_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7879638671875 2 458.787976 915.561398 0.46121 0.0002116 -0.39266 -0.00018015 0.068554 3.1452E-05 458.7877896758519 82.641 0.46375 82.144 81.917 82.38 -0.49751 33 19 3 0 0 0 0.80975 1 45292 45292 0.79363 0 1 2363100 + 70375 18689 47056 48080 81904 81904 0.10024002119837405 VKRSSARL 8 Unmodified _VKRSSARL_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 458.787976 915.561398 0.53434 0.00024515 0.30115 0.00013816 0.83549 0.00038331 458.78809007429464 81.918 0.38487 81.918 81.782 82.167 0 -0.1129 0.00032576 NaN 0.79363 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1120800 + 70376 18689 47056 48080 0.10024002119837405 VKRSSARL 8 Unmodified _VKRSSARL_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 458.787976 915.561398 0.46121 0.0002116 -0.39266 -0.00018015 0.068554 3.1452E-05 458.7877896758519 82.641 0.46375 82.144 81.917 82.38 -0.49751 0.1129 -0.00031087 NaN 0.79363 33 19 3 NaN NaN NaN NaN 0 NaN NaN 0 2363100 + 70377 18689 47056 48080 0.10024002119837405 VKRSYKKEL 9 Unmodified _VKRSYKKEL_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6 REV__nc|ENSG00000174233|O43306-2|ADCY6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2359313964844 3 384.236274 1149.68699 NaN NaN NaN NaN NaN NaN NaN 77.74 1 77.257 76.757 77.757 -0.4826 0 0 0 0.86004 1 42560 42560 0.26902 0 1 + 70378 22777 47057 48081 81905 81905 0.11813669185403342 VKRTTRMEQ 9 Unmodified _VKRTTRMEQ_ 0 0 0 REV__ENSG00000112309|ENST00000230053|B3GAT2 REV__ENSG00000112309|ENST00000230053|B3GAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.5445861816406 3 383.545002 1147.61318 NaN NaN NaN NaN NaN NaN NaN 19.604 1 19.612 19.112 20.112 0.0078487 0 0 0 0.85798 1 9977 9977 0.23584 0 1 + 70379 18810 47058 48082 81906 81906 0.045273777514239555 VKRVKKKK 8 Unmodified _VKRVKKKK_ 0 0 0 REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.3689880371094 2 507.368936 1012.72332 NaN NaN NaN NaN NaN NaN NaN 105.74 1 99.568 99.068 100.07 -6.1757 0 0 0 0.97444 1 70831 70831 0 0 1 + 70380 27120 47059 48083 81907 81907 0.21746590872783145 VKRVKKKKK 9 Unmodified _VKRVKKKKK_ 0 0 0 REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.2802124023438 3 381.280037 1140.81828 NaN NaN NaN NaN NaN NaN NaN 4.2008 1 4.1279 3.6279 4.6279 -0.072869 0 0 0 0.8622 1 2076 2076 0 0 1 + 70381 27120 47060 48084 81908 81908 0.2535052434395766 VKRVKKKKK 9 Unmodified _VKRVKKKKK_ 0 0 0 REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF REV__ENST00000444188.1_1_6:169613405-169614351:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2099914550781 3 381.280037 1140.81828 NaN NaN NaN NaN NaN NaN NaN 24.281 1 24.302 23.802 24.802 0.021185 0 0 0 0.8622 1 12523 12523 0 0 1 + 70382 27120 47060 48084 81909 81909 0.2535052434395766 VKRYLEGER 9 Unmodified _VKRYLEGER_ 0 0 0 nc|ENSG00000024048|Q8IWV8|UBR2;ENSG00000024048|ENST00000372901|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 nc|ENSG00000024048|Q8IWV8|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8839111328125 3 383.884012 1148.63021 -0.54826 -0.00021047 0.074061 2.8431E-05 -0.4742 -0.00018204 383.88404446249865 16.547 0.025723 16.548 16.541 16.566 0.0010548 9 7 2 0 0 0 0.61381 1 8170 8170 0.23584 0 1 264950 70383 550 47061 48085 81910 81910 0.061836216289066215 VKSLTKLAL 9 Unmodified _VKSLTKLAL_ 0 0 0 REV__ENSG00000136813|ENST00000684092|ECPAS REV__ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.64404296875 1 972.645194 971.637917 1.2729 0.0012381 -0.18593 -0.00018085 1.0869 0.0010572 972.6446897825924 105.23 0.1725 99.053 98.956 99.129 -6.1757 112 39 4 0 0 0 0.62242 2 70444 70444;70534 0 0 1 474440000 + 70384 20183 47062 48086 81911;81912 81911 0.15096380896443407 VKSRAARA 8 Unmodified _VKSRAARA_ 0 0 0 ENST00000310512.3_1_7:100027461-100027629:+|nuORF ENST00000310512.3_1_7:100027461-100027629:+|nuORF ENST00000310512.3_1_7:100027461-100027629:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 429.7673950195312 2 429.767043 857.519533 1.0626 0.00045668 -0.1351 -5.8062E-05 0.92753 0.00039862 429.7669214826799 70.632 0.89847 70.667 70.463 71.361 0.035515 54 40 2 0 0 0 0.80763 1 38892 38892 2.0598 2.0598 1 2962400 70385 11681 47063 48087 81913 81913 0.08507446431303833 VKSRLIIQL 9 Unmodified _VKSRLIIQL_ 0 0 0 REV__ENST00000359039.4_1_9:21332991-21333159:-|nuORF REV__ENST00000359039.4_1_9:21332991-21333159:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.3578491210938 2 535.358234 1068.70191 1.4998 0.00080294 0.16091 8.6143E-05 1.6607 0.00088908 535.3584361622416 104.02 0.16376 97.844 97.771 97.935 -6.1757 81 54 2 0 0 0 0.59218 1 69671 69671 1.8442 0.19162 1 11262000 + 70386 25886 47064 48088 81914 81914 0.1703116105340996 VKSYLSAFH 9 Unmodified _VKSYLSAFH_ 0 0 0 ENST00000526582.1_1_11:90848103-90848802:-|nuORF ENST00000526582.1_1_11:90848103-90848802:-|nuORF ENST00000526582.1_1_11:90848103-90848802:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2833251953125 2 526.282192 1050.54983 -0.2707 -0.00014246 1.5223 0.00080115 1.2516 0.00065869 526.2828118666937 36.911 0.2323 36.932 36.816 37.048 0.021545 17 10 2 0 0 0 0.39863 1 19585 19585 12.532 0.89125 1 2269400 70387 14821 47065 48089 81915 81915 0.026577603058512977 VKSYLSAFH 9 Unmodified _VKSYLSAFH_ 0 0 0 ENST00000526582.1_1_11:90848103-90848802:-|nuORF ENST00000526582.1_1_11:90848103-90848802:-|nuORF ENST00000526582.1_1_11:90848103-90848802:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.282192 1050.54983 -0.29397 -0.00015471 3.2592 0.0017153 2.9653 0.0015606 526.2835663353716 37.243 0.1699 36.971 36.897 37.067 -0.27133 0.019485 0.0016464 NaN 12.532 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 803520 70388 14821 47065 48089 0.026577603058512977 VKTDRKKTKKK 11 Unmodified _VKTDRKKTKKK_ 0 0 0 REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 680.443115234375 2 680.44336 1358.87217 NaN NaN NaN NaN NaN NaN NaN 78.697 1 78.697 78.197 79.197 0 0 0 0 0.9435 1 43727 43727 0 0 1 + 70389 19487 47066 48090 81916 81916 0.20708651984978133 VKTKKLKKL 9 Unmodified _VKTKKLKKL_ 0 0 0 ENSG00000084731|ENST00000264712|KIF3C;ENST00000488341.5_1_2:26174656-26179274:-|nuORF;ENST00000475453.1_1_2:26177134-26203442:-|nuORF ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C MSMS AL20221201_MKP_PDAC_01 4 543.3804321289062 2 543.392077 1084.7696 NaN NaN NaN NaN NaN NaN NaN 105.58 1 99.4 98.9 99.9 -6.1757 0 0 0 0.85737 1 70732 70732 0.6015 0.6015 1 70390 1395 47067 48091 81917 81917 0.23060610984225605 VKVAYEMNTA 10 Unmodified _VKVAYEMNTA_ 0 0 0 REV__nc|ENSG00000117676|Q15418-3|RPS6KA1 REV__nc|ENSG00000117676|Q15418-3|RPS6KA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.8586120605469 3 375.858475 1124.5536 0.064211 2.4134E-05 0.7983 0.00030005 0.86251 0.00032418 375.8588045950713 65.833 0.45837 65.833 65.572 66.03 0 38 22 2 0 0 0 0.64628 1 36752 36752 5.0475 0 1 4271500 + 70391 19120 47068 48092 81918 81918 -0.003699379825775395 VKVILISSVAF 11 Unmodified _VKVILISSVAF_ 0 0 0 ENSG00000177025|ENST00000314391|C19orf18 ENSG00000177025|ENST00000314391|C19orf18 ENSG00000177025|ENST00000314391|C19orf18 MSMS AL20221201_MKP_PDAC_01 4 588.3760986328125 2 588.373549 1174.73255 NaN NaN NaN NaN NaN NaN NaN 105.57 1 99.396 98.896 99.896 -6.1757 0 0 0 0.94165 1 70730 70730 1.3295 0 1 70392 8647 47069 48093 81919 81919 0.15216894647778645 VKVKKVACE 9 Unmodified _VKVKKVACE_ 0 0 0 nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 nc|ENSG00000145734|A6H8Y1-2|BDP1 MSMS AL20221201_MKP_PDAC_01 4 502.302734375 2 502.30207 1002.58959 NaN NaN NaN NaN NaN NaN NaN 108.34 1 102.17 101.67 102.67 -6.1757 0 0 0 0.85798 1 72415 72415 0.52476 0.52476 1 70393 5719 47070 48094 81920 81920 0.08839563984906817 VKVLILKKQ 9 Unmodified _VKVLILKKQ_ 0 0 0 ENST00000296468.7_1_4:128854167-128859985:-|nuORF ENST00000296468.7_1_4:128854167-128859985:-|nuORF ENST00000296468.7_1_4:128854167-128859985:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1069.938232421875 1 1068.75033 1067.74305 0.95139 0.0010168 -4.4668 -0.0047738 -3.5154 -0.0037571 1069.7479242842087 86.062 0.094711 79.887 79.829 79.924 -6.1757 7 4 2 0 0 0 0.58865 1 56697 56697 2.0598 1.535 1 6119100 70394 11509 47071 48095 81921 81921 0.21188922092892426 VKVPQLAL 8 Unmodified _VKVPQLAL_ 0 0 0 ENSG00000175928|ENST00000319331|LRRN1 ENSG00000175928|ENST00000319331|LRRN1 ENSG00000175928|ENST00000319331|LRRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 867.5641479492188 1 867.566215 866.558939 -0.36225 -0.00031427 -0.77964 -0.00067639 -1.1419 -0.00099066 867.564497512424 105.13 0.019241 105.08 105.08 105.1 -0.048737 7 4 2 0 0 0 0.81107 1 58352 58352 0 0 1 2416300 70395 8550 47072 48096 81922 81922 0.12032153662153178 VKVPWKIFH 9 Unmodified _VKVPWKIFH_ 0 0 0 ENST00000336216.8_1_15:77713046-77713202:+|nuORF ENST00000336216.8_1_15:77713046-77713202:+|nuORF ENST00000336216.8_1_15:77713046-77713202:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.2340393066406 3 385.234205 1152.68079 NaN NaN NaN NaN NaN NaN NaN 70.763 1 70.763 70.263 71.263 0 0 0 0 0.86004 1 39423 39423 0.26902 0 1 70396 11906 47073 48097 81923 81923 0.11055195744529556 VKVPYRKIT 9 Unmodified _VKVPYRKIT_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF;ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2 nc|ENSG00000263001|P78347-2|GTF2I;ENSG00000174428|ENST00000472837|GTF2IRD2B nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.3488159179688 2 552.350409 1102.68626 1.567 0.00086553 -1.6506 -0.00091169 -0.083582 -4.6167E-05 552.3494305110669 104.66 0.13159 98.488 98.417 98.549 -6.1757 14 7 2 0 0 0 0.61381 1 70081 70081 0.52476 0 1 30670000 70397 10851;8418 47074 48098 81924 81924 0.13902874536347554 VKVRQRGRA 9 Unmodified _VKVRQRGRA_ 0 0 0 ENST00000369519.3_1_10:112579905-112581102:+|nuORF ENST00000369519.3_1_10:112579905-112581102:+|nuORF ENST00000369519.3_1_10:112579905-112581102:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2145385742188 3 357.228224 1068.66284 0.13666 4.8819E-05 0.89548 0.00031989 1.0321 0.00036871 357.2283901088214 48.933 0.098244 48.889 48.81 48.908 -0.04369 5 4 2 0 0 0 0.21885 1 26385 26385 0.96228 0 1 740450 70398 12310 47075 48099 81925 81925 0.13125873542412592 VKVSVTKSG 9 Unmodified _VKVSVTKSG_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 904.545654296875 1 904.546208 903.538931 1.4637 0.001324 -0.21924 -0.00019831 1.2445 0.0011257 904.5458532478176 103.41 0.048409 97.239 97.216 97.265 -6.1757 11 6 2 0 0 0 0.59218 1 69342 69342 1.8442 0 1 5476600 + 70399 21279 47076 48100 81926 81926 0.08330357931561139 VKVVVPPL 8 Unmodified _VKVVVPPL_ 0 0 0 nc|ENSG00000112335|O60493-2|SNX3 nc|ENSG00000112335|O60493-2|SNX3 nc|ENSG00000112335|O60493-2|SNX3 MSMS AL20221201_MKP_PDAC_01 4 425.8815307617188 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 14.495 1 11.993 11.493 12.493 -2.5029 0 0 0 0.97444 1 7366 7366 0.79363 0 1 70400 16124 47077 48101 81927 81927 0.13797341667554974 VKWHEEPLL 9 Unmodified _VKWHEEPLL_ 0 0 0 REV__ENSG00000144535|ENST00000325385|DIS3L2 REV__ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8165893554688 2 575.816399 1149.61824 0.47544 0.00027377 0.86688 0.00049916 1.3423 0.00077293 575.8164734052223 62.91 0.2936 62.888 62.735 63.029 -0.021618 33 14 3 0 0 0 0.06294 1 34418 34418 41.84 9.5341 1 5537300 + 70401 20713 47078 48102 81928 81928 0.04942004885697315 VKWHEEPLL 9 Unmodified _VKWHEEPLL_ 0 0 0 REV__ENSG00000144535|ENST00000325385|DIS3L2 REV__ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 575.816399 1149.61824 0.47544 0.00027377 0.86688 0.00049916 1.3423 0.00077293 575.8164734052223 62.91 0.2936 62.888 62.735 63.029 -0.021618 -0.00034209 3.5222E-05 NaN 41.84 33 14 3 NaN NaN NaN NaN 0 NaN NaN 0 5537300 + 70402 20713 47078 48102 0.04942004885697315 VKYEKQLL 8 Unmodified _VKYEKQLL_ 0 0 0 REV__nc|ENSG00000228970|P0CB48|UBTFL6 REV__nc|ENSG00000228970|P0CB48|UBTFL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8086853027344 2 510.808042 1019.60153 0.95783 0.00048927 0.14332 7.3211E-05 1.1012 0.00056248 510.8078074675186 89.746 1.1215 83.57 82.779 83.9 -6.1757 157 62 3 0 0 0 0.21098 1 58918 58918 68.081 0 1 45185000 + 70403 29955 47079 48103 81929 81929 0.09251503999769284 VKYKLRGLMR 10 Unmodified _VKYKLRGLMR_ 0 0 0 REV__ENSG00000156650|ENST00000287239|KAT6B REV__ENSG00000156650|ENST00000287239|KAT6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.7921752929688 2 632.389542 1262.76453 NaN NaN NaN NaN NaN NaN NaN 94.383 1 94.383 93.883 94.883 0 0 0 0 1.0024 1 52172 52172 0.40072 0 1 + 70404 21339 47080 48104 81930 81930 0.14365983849938857 VLADALKSI 9 Unmodified _VLADALKSI_ 0 0 0 ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENSG00000134419|ENST00000322989|RPS15A;ENST00000573554.1_1_16:18800267-18800435:-|nuORF ENSG00000134419|ENST00000322989|RPS15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2870483398438 2 465.286943 928.559333 0.019957 9.2859E-06 -0.31944 -0.00014863 -0.29948 -0.00013935 465.28649603566333 56.99 0.27538 56.505 56.329 56.605 -0.48554 21 12 2 0 0 0 0.091924 1 30953 30953 34.932 0.53034 1 2992500 70405 4606;15501 47081 48105 81931 81931 0.09219528591370363 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.81591796875 2 499.815867 997.617182 0.85289 0.00042629 0.017009 8.5014E-06 0.8699 0.00043479 499.8157733826039 64.396 0.33484 64.386 64.232 64.567 -0.010529 40 16 3 0 0 0 0.017075 1 35248 35248 66.457 20.757 1 12090000 70406 1916 47082 48106 81932 81932 0.11827790516804271 VLADLKVQL 9 Unmodified _VLADLKVQL_ 0 0 0 ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF ENSG00000101132|ENST00000371419|PFDN4 ENSG00000101132|ENST00000371419|PFDN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8156127929688 2 499.815867 997.617182 1.1667 0.00058314 0.01837 9.1814E-06 1.1851 0.00059232 499.8157756028897 71.963 0.83148 65.787 65.462 66.293 -6.1757 75 44 2 0 0 0 0.044296 1 47335 47335 47.594 1.8948 1 43949000 70407 1916 47082 48106 81933 81933 0.11827790516804271 VLADQVWTL 9 Unmodified _VLADQVWTL_ 0 0 0 nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-4|OGG1;nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-3|OGG1 nc|ENSG00000114026|O15527-5|OGG1 nc|ENSG00000114026|O15527-5|OGG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7900390625 2 522.78985 1043.56515 0.5896 0.00030823 0.90294 0.00047205 1.4925 0.00078028 522.790276908205 81.913 0.42075 81.418 81.185 81.606 -0.4952 31 13 3 0 0 0 0.16226 2 44816 44816;44927 26.884 12.045 1 1516400 70408 16130 47083 48107 81934;81935 81934 0.04510627103036313 VLAERHIF 8 Unmodified _VLAERHIF_ 0 0 0 REV__ENSG00000221909|ENST00000449309|FAM200A REV__ENSG00000221909|ENST00000449309|FAM200A MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7848815917969 2 492.784902 983.55525 0.74867 0.00036893 -0.52445 -0.00025844 0.22422 0.00011049 492.78445139210504 57.034 0.45905 51.057 50.811 51.27 -5.9769 41 27 2 0 0 0 0.63229 1 36354 36354 23.148 1.4018 1 49644000 + 70409 24364 47084 48108 81936 81936 0.06281483888324146 VLAETLTQV 9 Unmodified _VLAETLTQV_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2807922363281 2 487.281857 972.549162 -0.32646 -0.00015908 -0.38626 -0.00018822 -0.71272 -0.0003473 487.2815307597164 55.968 0.26969 55.968 55.869 56.138 0 20 14 2 0 0 0 0.052168 1 31135 31135 44.407 14.182 1 4655600 70410 306 47085 48109 81937 81937 0.0617892086613665 VLAGSVPP 8 Unmodified _VLAGSVPP_ 0 0 0 ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENSG00000213471|ENST00000641754|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENSG00000213471|ENST00000641754|TTLL13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2203674316406 2 370.221072 738.42759 -0.033934 -1.2563E-05 -0.53547 -0.00019824 -0.5694 -0.0002108 370.22084987888536 70.036 0.48305 70.036 69.797 70.28 0 84 55 2 0 0 0 0.74163 1 38975 38975 13.508 0.97634 1 5689200 70411 10439;15329 47086 48110 81938 81938 0.047913432942777945 VLAGSVPP 8 Unmodified _VLAGSVPP_ 0 0 0 ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENSG00000213471|ENST00000641754|TTLL13;ENST00000561573.1_1_15:90806992-90815017:+|nuORF ENSG00000213471|ENST00000641754|TTLL13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2213134765625 2 370.221072 738.42759 0.22889 8.4742E-05 -0.86225 -0.00031922 -0.63335 -0.00023448 370.2208067534859 70.489 0.465 70.012 69.821 70.286 -0.47735 55 38 2 0 0 0 0.67481 1 38524 38524 19.439 1.304 1 6653800 70412 10439;15329 47086 48110 81939 81939 0.047913432942777945 VLAKLGTS 8 Unmodified _VLAKLGTS_ 0 0 0 nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1;nc|ENSG00000115839|Q15042-3|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 nc|ENSG00000115839|Q15042-4|RAB3GAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.7487182617188 2 394.747453 787.480354 NaN NaN NaN NaN NaN NaN NaN 68.889 1 68.889 68.389 69.389 0 0 0 0 0.97444 1 38390 38390 0.69038 0 1 70413 3167 47087 48111 81940 81940 0.07811301357116918 VLALDAPRQ 9 Unmodified _VLALDAPRQ_ 0 0 0 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7868957519531 2 491.787641 981.56073 -0.4293 -0.00021112 0.27299 0.00013425 -0.15631 -7.687E-05 491.78770061816164 18.213 0.17908 18.213 18.113 18.292 0 35 25 2 0 0 0 0.54444 1 9022 9022 4.756 0.42677 1 724430 + 70414 24302 47088 48112 81941 81941 0.06921162680134785 VLALDAPRQ 9 Unmodified _VLALDAPRQ_ 0 0 0 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 REV__nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 491.787641 981.56073 -0.4293 -0.00021112 0.27299 0.00013425 -0.15631 -7.687E-05 491.78770061816164 18.213 0.17908 18.213 18.113 18.292 0 0 0 NaN 4.756 35 25 2 NaN NaN NaN NaN 0 NaN NaN 0 724430 + 70415 24302 47088 48112 0.06921162680134785 VLALMQKHRR 10 Unmodified _VLALMQKHRR_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.9209594726562 3 417.920403 1250.73938 -0.075349 -3.149E-05 1.178 0.00049229 1.1026 0.0004608 417.9208363725313 40.014 0.57408 40.014 39.74 40.314 0 51 28 2 0 0 0 0.71981 1 21389 21389 0.69767 0.07084 1 2252100 70416 486 47089 48113 81942 81942 0.12403929047354723 VLALMQKHRR 10 Unmodified _VLALMQKHRR_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2557067871094 3 417.920403 1250.73938 0.29394 0.00012284 0.90843 0.00037965 1.2024 0.00050249 417.92067857490593 40.091 0.94405 40.096 39.688 40.633 0.0050545 154 44 4 0 0 0 0.69126 1 21203 21203 3.8763 0.80407 1 35230000 70417 486 47089 48113 81943 81943 0.12403929047354723 VLALMQKHRR 10 Unmodified _VLALMQKHRR_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 417.920403 1250.73938 0.54263 0.00022678 0.73906 0.00030887 1.2817 0.00053564 417.9207189682167 40.388 0.56263 40.091 39.882 40.445 -0.29716 -0.067722 -0.00025166 NaN 3.8763 48 26 2 NaN NaN NaN NaN 0 NaN NaN 0 1645300 70418 486 47089 48113 0.12403929047354723 VLALMQKHRR 10 Unmodified _VLALMQKHRR_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000533079.5_1_11:64955425-64973207:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 417.920403 1250.73938 0.70371 0.0002941 1.0384 0.00043396 1.7421 0.00072806 417.9206564703023 45.389 0.31413 40.434 40.284 40.598 -4.9549 0.27536 0.00012362 NaN 3.8763 50 21 3 NaN NaN NaN NaN 0 NaN NaN 0 31133000 70419 486 47089 48113 0.12403929047354723 VLAMSFFIALF 11 Unmodified _VLAMSFFIALF_ 0 0 0 REV__ENSG00000129749|ENST00000250699|CHRNA10 REV__ENSG00000129749|ENST00000250699|CHRNA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.23486328125 3 420.234994 1257.68315 0.33907 0.00014249 0.10465 4.3976E-05 0.44371 0.00018646 420.2350759192503 52.996 0.60421 52.544 52.318 52.922 -0.45173 76 30 3 0 0 0 0.71341 1 28821 28821 1.2148 0 1 21177000 + 70420 19684 47090 48114 81944 81944 0.06461863367348997 VLAPVILML 9 Unmodified _VLAPVILML_ 0 0 0 ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;nc|ENSG00000108846|O15438-2|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF ENSG00000108846|ENST00000285238|ABCC3 ENSG00000108846|ENST00000285238|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 968.6242065429688 1 968.621287 967.614011 0.70628 0.00068412 0.59081 0.00057227 1.2971 0.0012564 968.6215675629188 102.21 0.094475 96.039 95.978 96.072 -6.1757 5 3 2 0 0 0 0.085487 1 68604 68604 36.466 8.2929 1 2184000 70421 2613 47091 48115 81945 81945 0.12890824138446533 VLAQHPPR 8 Unmodified _VLAQHPPR_ 0 0 0 REV__ENSG00000126254|ENST00000262633|RBM42 REV__ENSG00000126254|ENST00000262633|RBM42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2696838378906 2 459.269419 916.524284 0.34533 0.0001586 0.054081 2.4838E-05 0.39941 0.00018344 459.2693544452921 34.135 0.21099 34.163 34.014 34.225 0.028934 19 9 3 0 0 0 0.79669 1 17976 17976 8.5933 0 1 1467400 + 70422 19542 47092 48116 81946 81946 0.06268330574084757 VLAQQIATL 9 Unmodified _VLAQQIATL_ 0 0 0 nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 nc|ENSG00000076944|Q15833-2|STXBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7926025390625 2 478.792392 955.570232 0.54471 0.0002608 -0.54475 -0.00026082 -3.949E-05 -1.8907E-08 478.79197240903204 61.934 0.24504 61.446 61.305 61.55 -0.48764 16 11 2 0 0 0 0.078417 1 33738 33738 38.151 2.107 1 1220200 70423 1199 47093 48117 81947 81947 0.09066930965661868 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.7251892089844 2 364.724313 727.434072 -0.66871 -0.00024389 2.7248 0.00099379 2.0561 0.0007499 364.72515915445126 102.87 0.1081 102.82 102.75 102.86 -0.047928 8 3 3 0 0 0 0.81107 1 57137 57137 0 0 1 10687000 + 70424 23378 47094 48118 81948 81948 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.7254028320312 2 364.724313 727.434072 2.2276 0.00081245 1.1463 0.0004181 3.3739 0.0012306 364.72461939450375 108.9 0.10667 102.72 102.68 102.79 -6.1757 33 18 2 0 0 0 0.81107 1 72738 72738 0 0 1 3699700 + 70425 23378 47094 48118 81949 81949 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.7250061035156 2 364.724313 727.434072 2.2275 0.00081244 0.97082 0.00035408 3.1984 0.0011665 364.72457348574216 109.01 0.24464 102.83 102.79 103.03 -6.1757 65 47 2 0 0 0 0.81107 1 72845 72845 0 0 1 3452100 + 70426 23378 47094 48118 81950 81950 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.7250366210938 2 364.724313 727.434072 NaN NaN NaN NaN NaN NaN NaN 108.14 1 101.97 101.47 102.47 -6.1757 0 0 0 0.97444 1 72289 72289 0 0 1 + 70427 23378 47094 48118 81951 81951 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.7254638671875 2 364.724313 727.434072 NaN NaN NaN NaN NaN NaN NaN 108.32 1 102.14 101.64 102.64 -6.1757 0 0 0 0.97444 1 72401 72401 0 0 1 + 70428 23378 47094 48118 81952 81952 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.7249145507812 2 364.724313 727.434072 NaN NaN NaN NaN NaN NaN NaN 108.49 1 102.32 101.82 102.82 -6.1757 0 0 0 0.97444 1 72509 72509 0 0 1 + 70429 23378 47094 48118 81953 81953 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.725341796875 2 364.724313 727.434072 NaN NaN NaN NaN NaN NaN NaN 108.69 1 102.51 102.01 103.01 -6.1757 0 0 0 0.97444 1 72629 72629 0 0 1 + 70430 23378 47094 48118 81954 81954 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.7254028320312 2 364.724313 727.434072 NaN NaN NaN NaN NaN NaN NaN 109.25 1 103.07 102.57 103.57 -6.1757 0 0 0 0.97444 1 72971 72971 0 0 1 + 70431 23378 47094 48118 81955 81955 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 364.724313 727.434072 -0.66871 -0.00024389 2.7248 0.00099379 2.0561 0.0007499 364.72515915445126 102.87 0.1081 102.82 102.75 102.86 -0.047928 -0.0043038 0.0010972 NaN 0 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 10687000 + 70432 23378 47094 48118 0.059452812456811444 VLARGVGG 8 Unmodified _VLARGVGG_ 0 0 0 REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF REV__ENST00000528758.1_1_11:7507087-7531416:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 364.724313 727.434072 2.2275 0.00081244 0.97082 0.00035408 3.1984 0.0011665 364.72457348574216 109.01 0.24464 102.83 102.79 103.03 -6.1757 0.0043038 -0.00018227 NaN 0 65 47 2 NaN NaN NaN NaN 0 NaN NaN 0 3452100 + 70433 23378 47094 48118 0.059452812456811444 VLARVRPRPLS 11 Unmodified _VLARVRPRPLS_ 0 0 0 REV__nc|ENSG00000119408|Q9HC98-2|NEK6 REV__nc|ENSG00000119408|Q9HC98-2|NEK6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.4032592773438 2 632.404038 1262.79352 1.4076 0.00089016 0.082077 5.1906E-05 1.4897 0.00094207 632.4038468348449 105.06 0.23941 98.885 98.76 98.999 -6.1757 132 30 7 0 0 0 0.7453 1 70284 70284 0 0 1 8315199999.999999 + 70434 29601 47095 48119 81956 81956 0.1726384447063083 VLASLIIRL 9 Unmodified _VLASLIIRL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3423156738281 2 499.342052 996.669552 -0.15534 -7.7569E-05 -0.18856 -9.4155E-05 -0.3439 -0.00017172 499.341939273045 85.155 0.18916 85.218 85.073 85.262 0.063171 11 7 2 0 0 0 0.0082661 1 47126 47126 92.491 27.256 1 6237600 70435 2972 47096 48120 81957 81957 0.17108373650421527 VLASLIIRL 9 Unmodified _VLASLIIRL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3419799804688 2 499.342052 996.669552 0.35379 0.00017666 0.14692 7.3361E-05 0.50071 0.00025002 499.3419876766894 98.997 0.30754 92.821 92.74 93.048 -6.1757 26 18 2 0 0 0 0.0026776 1 65780 65780 128.37 43.009 1 52596000 70436 2972 47096 48120 81958 81958 0.17108373650421527 VLASLIIRL 9 Unmodified _VLASLIIRL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MSMS AL20221201_MKP_PDAC_01 4 499.342529296875 2 499.342052 996.669552 NaN NaN NaN NaN NaN NaN NaN 99.152 1 92.977 92.477 93.477 -6.1757 0 0 0 0.01231 1 65946 65946 88.954 17.82 1 70437 2972 47096 48120 81959 81959 0.17108373650421527 VLASRLFQL 9 Unmodified _VLASRLFQL_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8226318359375 2 523.821484 1045.62842 1.1795 0.00061786 -0.44207 -0.00023157 0.73745 0.00038629 523.8214247246877 95.163 0.19776 88.987 88.891 89.089 -6.1757 14 10 2 0 0 0 0.033587 1 63006 63006 53.404 1.1357 1 7757800 70438 2647 47097 48121 81960 81960 0.1074261261094307 VLASSTLL 8 Unmodified _VLASSTLL_ 0 0 0 REV__ENST00000530353.1_1_8:145980334-145980610:-|nuORF REV__ENST00000530353.1_1_8:145980334-145980610:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2492980957031 2 402.247286 802.48002 NaN NaN NaN NaN NaN NaN NaN 18.702 1 18.708 18.208 19.208 0.0060463 0 0 0 0.97444 1 9487 9487 0.79363 0 1 + 70439 28438 47098 48122 81961 81961 0.07087881637255578 VLASVFLFV 9 Unmodified _VLASVFLFV_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.5995483398438 1 994.597181 993.589904 0.76128 0.00075716 1.9496 0.0019391 2.7109 0.0026963 994.5992785502684 102.17 0.087898 95.991 95.939 96.027 -6.1757 6 3 2 0 0 0 0.03327 1 68570 68570 53.576 0 1 5453200 70440 686 47099 48123 81962 81962 0.09285306976426 VLCALGILL 9 Unmodified _VLCALGILL_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.576416015625 1 914.574337 913.56706 0.31014 0.00028365 0.263 0.00024053 0.57314 0.00052418 914.5749654097848 101.71 0.10089 95.535 95.461 95.562 -6.1757 10 4 3 0 0 0 0.085487 1 68252 68252 36.466 0 1 27717000 + 70441 19763 47100 48124 81963 81963 0.10681964587308812 VLCELINAL 9 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))ELINAL_ VLC(1)ELINAL VLC(54)ELINAL 0 1 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.79052734375 2 522.791535 1043.56852 0.40363 0.00021101 -1.7636 -0.00092202 -1.36 -0.000711 522.790788721901 85.225 0.2968 84.723 84.555 84.852 -0.5015 37 16 3 0 0 0 0.03327 1 46595 46595 53.576 25.089 1 4108400 70442 6604 47101 48125 81964 81964 649 0.04847553885383604 VLCELINAL 9 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))ELINAL_ VLC(1)ELINAL VLC(61)ELINAL 0 1 0 ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF ENSG00000158710|ENST00000368097|TAGLN2 ENSG00000158710|ENST00000368097|TAGLN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.792724609375 2 522.791535 1043.56852 1.5058 0.00078721 -0.66033 -0.00034522 0.84546 0.000442 522.7913941620187 97.389 0.66411 91.213 90.845 91.509 -6.1757 111 37 4 0 0 0 0.022193 3 64581 64463;64581;64697 61.357 28.572 1 70874000 70443 6604 47101 48125 81965;81966;81967 81966 649 0.04847553885383604 VLCHALESY 9 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))HALESY_ VLC(1)HALESY VLC(44)HALESY 0 1 0 nc|ENSG00000285791|Q8IWW8-4|ADHFE1;nc|ENSG00000285791|Q8IWW8-3|ADHFE1;nc|ENSG00000285791|Q8IWW8-2|ADHFE1;ENSG00000147576|ENST00000396623|ADHFE1 nc|ENSG00000285791|Q8IWW8-4|ADHFE1 nc|ENSG00000285791|Q8IWW8-4|ADHFE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2647094726562 2 546.263142 1090.51173 1.1589 0.00063306 3.2868 0.0017955 4.4457 0.0024285 546.2649643659018 49.544 0.1999 44.148 44.022 44.222 -5.3961 15 12 2 0 0 0 0.052168 1 30949 30949 44.407 6.433 1 33681000 70444 5863 47102 48126 81968 81968 593 -0.02990493671131844 VLCNVVEQF 9 Carbamidomethyl (C) _VLC(Carbamidomethyl (C))NVVEQF_ VLC(1)NVVEQF VLC(78)NVVEQF 0 1 0 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 ENSG00000121060|ENST00000316881|TRIM25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7822875976562 2 554.278792 1106.54303 1.1631 0.00064467 1.4291 0.00079212 2.5922 0.0014368 554.2793096499367 71.162 0.30898 64.986 64.842 65.151 -6.1757 21 14 2 0 0 0 0.010877 1 46512 46512 77.984 54.836 1 18230000 70445 3564 47103 48127 81969 81969 358 -0.005979206370511747 VLCSLFQIVV 10 Unmodified _VLCSLFQIVV_ 0 0 0 REV__ENST00000581453.1_1_17:73492852-73494804:+|nuORF REV__ENST00000581453.1_1_17:73492852-73494804:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8242797851562 2 560.825378 1119.6362 0.99642 0.00055882 2.5141 0.00141 3.5105 0.0019688 560.8267825401356 71.875 0.47712 71.914 71.557 72.035 0.039024 50 22 3 0 0 0 0.24625 1 39503 39503 30.637 5.2372 1 4042500 + 70446 23001 47104 48128 81970 81970 0.08117003816209944 VLDDILTEV 9 Unmodified _VLDDILTEV_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7799377441406 2 508.779148 1015.54374 NaN NaN NaN NaN NaN NaN NaN 80.395 1 80.395 79.895 80.895 0 0 0 0 0.7243 1 44641 44641 8.5933 2.2392 1 70447 1379 47105 48129 81971 81971 0.03659197283673166 VLDDKLVFV 9 Unmodified _VLDDKLVFV_ 0 0 0 ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 ENST00000426898.2_1_12:45610123-45776982:+|nuORF ENST00000426898.2_1_12:45610123-45776982:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.30810546875 2 524.307875 1046.6012 -0.15026 -7.8782E-05 -0.12183 -6.3877E-05 -0.27209 -0.00014266 524.3080795862601 69.907 0.34085 69.428 69.245 69.586 -0.47903 41 15 4 0 0 0 0.012228 1 38182 38182 74.2 24.267 1 14667000 70448 8658 47106 48130 81972 81972 0.07976084279880524 VLDDKLVFV 9 Unmodified _VLDDKLVFV_ 0 0 0 ENST00000426898.2_1_12:45610123-45776982:+|nuORF;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6 ENST00000426898.2_1_12:45610123-45776982:+|nuORF ENST00000426898.2_1_12:45610123-45776982:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.307875 1046.6012 0.51445 0.00026973 -0.11092 -5.8156E-05 0.40353 0.00021158 524.3078126800613 69.455 0.2923 69.455 69.326 69.618 0 0.013577 5.6057E-06 NaN 74.2 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2319000 70449 8658 47106 48130 0.07976084279880524 VLDDKLYVV 9 Unmodified _VLDDKLYVV_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3059692382812 2 532.305332 1062.59611 0.43735 0.0002328 0.94796 0.0005046 1.3853 0.00073741 532.3060587410379 56.863 0.22768 56.863 56.746 56.974 0 21 9 3 0 0 0 0.14 1 31630 31630 29.082 7.3349 1 2269400 70450 2675 47107 48131 81973 81973 0.06731780417271693 VLDDKLYVV 9 Unmodified _VLDDKLYVV_ 0 0 0 nc|ENSG00000109790|Q96PQ7-5|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 nc|ENSG00000109790|Q96PQ7-5|KLHL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.3056030273438 2 532.305332 1062.59611 0.43589 0.00023203 0.080699 4.2957E-05 0.51659 0.00027498 532.3052692352747 57.329 0.23438 56.839 56.729 56.964 -0.48974 17 10 2 0 0 0 0.1773 1 31189 31189 25.399 9.5521 1 1168600 70451 2675 47107 48131 81974 81974 0.06731780417271693 VLDELKNMKC 10 Carbamidomethyl (C) _VLDELKNMKC(Carbamidomethyl (C))_ VLDELKNMKC(1) VLDELKNMKC(43) 0 1 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENST00000518511.1_1_5:156727833-156729928:+|nuORF;ENSG00000273749|ENST00000617928|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.2142639160156 3 417.214153 1248.62063 1.3838 0.00057733 -0.68055 -0.00028394 0.70321 0.00029339 417.2141203518088 40.76 0.41586 36.23 36.016 36.432 -4.5294 79 25 4 0 0 0 0.12584 1 24303 24303 42.835 13.554 1 50460000 70452 10896;775 47108 48132 81975 81975 63 0.006263492368589141 VLDELKNMKC 10 Carbamidomethyl (C) _VLDELKNMKC(Carbamidomethyl (C))_ VLDELKNMKC(1) VLDELKNMKC(110) 0 1 0 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000055163|ENST00000620254|CYFIP2;ENST00000518511.1_1_5:156727833-156729928:+|nuORF;ENSG00000273749|ENST00000617928|CYFIP1 nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1 ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.3169555664062 2 625.317591 1248.62063 0.9001 0.00056285 -0.18455 -0.0001154 0.71555 0.00044745 625.317427236316 40.793 0.34181 36.264 36.064 36.405 -4.5294 50 20 3 0 0 0 0.0021808 2 24473 24337;24473 107.56 61.824 1 12901000 70453 10896;775 47108 48132 81976;81977 81977 63 0.006263492368589141 VLDELVRP 8 Unmodified _VLDELVRP_ 0 0 0 nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000164749|ENST00000396423|HNF4G nc|ENSG00000164749|Q14541|HNF4G nc|ENSG00000164749|Q14541|HNF4G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7769470214844 2 470.776742 939.538931 0.82337 0.00038763 -0.13802 -6.4976E-05 0.68536 0.00032265 470.77661200910575 47.578 0.36258 47.578 47.405 47.767 0 52 16 4 0 0 0 0.38465 1 26114 26114 46.021 0 1 53560000 70454 7240 47109 48133 81978 81978 0.0667435793156983 VLDFPFLYF 9 Unmodified _VLDFPFLYF_ 0 0 0 ENST00000581444.5_1_18:20889645-20956810:-|nuORF;ENSG00000134490|ENST00000383233|TMEM241 ENST00000581444.5_1_18:20889645-20956810:-|nuORF ENST00000581444.5_1_18:20889645-20956810:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8024291992188 2 580.804968 1159.59538 0.39534 0.00022961 -3.3479 -0.0019445 -2.9526 -0.0017149 580.8025981292892 67.68 0.18247 67.68 67.56 67.743 0 10 8 2 0 0 0 0.49272 1 37766 37766 7.9102 1.187 1 860270 70455 4613 47110 48134 81979 81979 0.0219698576825067 VLDILAKNLH 10 Unmodified _VLDILAKNLH_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MSMS AL20221201_MKP_PDAC_01 4 379.2335205078125 3 379.232641 1134.67609 NaN NaN NaN NaN NaN NaN NaN 105.34 1 99.163 98.663 99.663 -6.1757 0 0 0 0.97302 1 70588 70588 1.7423 0.14999 1 70456 3067 47111 48135 81980 81980 0.11414266811129892 VLDIRLWF 8 Unmodified _VLDIRLWF_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|179|1|anti-sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|179|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.5431823730469 3 354.542927 1060.60695 0.12697 4.5016E-05 0.50381 0.00017862 0.63078 0.00022364 354.54311960032203 48.939 0.31318 48.895 48.714 49.027 -0.04369 37 15 3 0 0 0 0.80676 1 26443 26443 1.6526 0.58116 1 7302400 + 70457 16802 47112 48136 81981 81981 0.07907227582222731 VLDLLDICTY 10 Unmodified _VLDLLDICTY_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.804443359375 2 584.301933 1166.58931 0.26341 0.00015391 0.22989 0.00013432 0.4933 0.00028823 584.8034876670972 36.092 0.3294 36.092 35.878 36.207 0 49 16 5 0 0 0 0.63089 1 19175 19175 10.824 2.6684 1 18383000 + 70458 24211 47113 48137 81982 81982 0.012680994743959673 VLDMKHVL 8 Unmodified _VLDMKHVL_ 0 0 0 REV__ENST00000474757.1_1_X:55757854-55777647:+|nuORF REV__ENST00000474757.1_1_X:55757854-55777647:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 477.2706604003906 2 477.775688 953.536823 1.236 0.00059051 2.4162 0.0011544 3.6522 0.0017449 477.7767376499631 41.97 0.3563 37.285 37.067 37.423 -4.6846 36 22 2 0 0 0 8.7369 1 25183 25183 11.64 2.2929 1 10172000 + 70459 17724 47114 48138 81983 81983 0.05819605922113169 VLDNFQDQIQ 10 Unmodified _VLDNFQDQIQ_ 0 0 0 REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.20361328125 3 407.203299 1218.58807 -0.66521 -0.00027088 0.13168 5.3621E-05 -0.53353 -0.00021726 407.20353335863285 16.379 0.18168 16.379 16.284 16.466 0 153 44 5 0 0 0 0.69377 1 7942 7942 1.7423 0 1 10855000 + 70460 19258 47115 48139 81984 81984 -0.012483985701237543 VLDNFQDQIQ 10 Unmodified _VLDNFQDQIQ_ 0 0 0 REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 407.203299 1218.58807 -0.66521 -0.00027088 0.13168 5.3621E-05 -0.53353 -0.00021726 407.20353335863285 16.379 0.18168 16.379 16.284 16.466 0 -0.1091 -0.00016121 NaN 1.7423 153 44 5 NaN NaN NaN NaN 0 NaN NaN 0 10855000 + 70461 19258 47115 48139 -0.012483985701237543 VLDNFQDQIQ 10 Unmodified _VLDNFQDQIQ_ 0 0 0 REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF REV__ENST00000511381.1_1_5:138677603-138704484:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 407.203299 1218.58807 -0.18665 -7.6005E-05 0.61951 0.00025226 0.43285 0.00017626 407.20378875665904 16.592 0.18126 16.597 16.494 16.675 0.0050564 0.1091 0.00043472 NaN 1.7423 24 9 4 NaN NaN NaN NaN 0 NaN NaN 0 5427900 + 70462 19258 47115 48139 -0.012483985701237543 VLDNLLAFV 9 Unmodified _VLDNLLAFV_ 0 0 0 ENSG00000136888|ENST00000374050|ATP6V1G1 ENSG00000136888|ENST00000374050|ATP6V1G1 ENSG00000136888|ENST00000374050|ATP6V1G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2961120605469 2 502.294768 1002.57498 0.87787 0.00044095 1.4115 0.00070898 2.2894 0.0011499 502.295770409846 101.56 0.13445 95.384 95.309 95.443 -6.1757 15 6 3 0 0 0 0.039985 1 68151 68151 49.933 3.912 1 27586000 70463 4877 47116 48140 81985 81985 0.07379815108424737 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.5189208984375 1 864.518931 863.511654 0.12332 0.00010661 -0.16339 -0.00014126 -0.040074 -3.4645E-05 864.5187789253664 92.369 0.42201 92.369 92.147 92.569 0 81 31 3 0 0 0 0.42423 1 51096 51096 42.095 2.1372 1 4767700 70464 3280 47117 48141 81986 81986 0.07443874391185545 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 864.5183715820312 1 864.518931 863.511654 -0.16129 -0.00013944 0.010715 9.2633E-06 -0.15057 -0.00013017 864.5187929204893 92.877 0.53891 92.419 92.189 92.728 -0.4574 77 27 4 0 0 0 0.17097 2 50774 50680;50774 81.613 41.656 1 15994000 70465 3280 47117 48141 81987;81988 81988 0.07443874391185545 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.7628784179688 2 432.763104 863.511654 0.39194 0.00016962 -0.65405 -0.00028305 -0.26212 -0.00011344 432.76273558607187 92.896 0.47237 92.439 92.211 92.683 -0.45741 61 24 3 0 0 0 0.48669 2 50720 50720;50823 36.044 7.5574 1 8748000 70466 3280 47117 48141 81989;81990 81989 0.07443874391185545 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 864.5187377929688 1 864.518931 863.511654 0.28751 0.00024856 0.15385 0.00013301 0.44136 0.00038156 864.5191085215874 99.895 0.28251 93.719 93.588 93.87 -6.1757 47 20 3 0 0 0 0.38465 2 66584 66584;66761 46.021 7.8698 1 201580000 70467 3280 47117 48141 81991;81992 81991 0.07443874391185545 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.7630615234375 2 432.763104 863.511654 0.58527 0.00025329 -0.066142 -2.8624E-05 0.51913 0.00022466 432.7631440329547 99.892 0.21864 93.716 93.6 93.819 -6.1757 27 16 2 0 0 0 0.31612 1 66625 66625 53.576 2.7205 1 80949000 70468 3280 47117 48141 81993 81993 0.07443874391185545 VLDPVPKP 8 Unmodified _VLDPVPKP_ 0 0 0 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 ENSG00000117091|ENST00000368046|CD48 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 432.763104 863.511654 0.1816 7.8591E-05 -0.57637 -0.00024943 -0.39477 -0.00017084 432.7628332373279 92.343 0.38396 92.343 92.147 92.531 0 -0.048203 3.6224E-05 NaN 36.044 62 28 3 NaN NaN NaN NaN 0 NaN NaN 0 2346100 70469 3280 47117 48141 0.07443874391185545 VLDQLRLLNKR 11 Unmodified _VLDQLRLLNKR_ 0 0 0 REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.6224975585938 3 456.620899 1366.84087 1.6393 0.00074855 1.1079 0.00050589 2.7472 0.0012544 456.62150986886314 104.58 0.11668 98.406 98.36 98.476 -6.1757 7 5 2 0 0 0 0.74096 1 70033 70033 0.40827 0 1 7596400 + 70470 17900 47118 48142 81994 81994 0.17212078950933574 VLDQLYTSQA 10 Unmodified _VLDQLYTSQA_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.293701171875 2 569.292953 1136.57135 0.51379 0.00029249 -0.1228 -6.9908E-05 0.39099 0.00022259 569.2929256863508 70.77 0.34058 70.293 70.119 70.459 -0.47735 51 17 4 0 0 0 0.5802 1 38667 38667 19.257 2.1441 1 13244000 70471 2128 47119 48143 81995 81995 0.008531005439181172 VLDQQLIM 8 Unmodified _VLDQQLIM_ 0 0 0 REV__nc|ENSG00000051341|O75417-2|POLQ REV__nc|ENSG00000051341|O75417-2|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2653503417969 2 480.265153 958.515753 0.50485 0.00024246 0.18115 8.7002E-05 0.686 0.00032946 480.265181269704 94.788 0.31098 94.367 94.178 94.489 -0.42044 26 14 2 0 0 0 0.80975 1 51821 51821 0.79363 0 1 480010 + 70472 17266 47120 48144 81996 81996 0.03483595822604002 VLDQQVVF 8 Unmodified _VLDQQVVF_ 0 0 0 REV__ENST00000483468.5_1_6:139268983-139308752:-|nuORF REV__ENST00000483468.5_1_6:139268983-139308752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2632446289062 2 474.263468 946.512382 0.98452 0.00046692 0.52212 0.00024762 1.5066 0.00071455 474.26376500195244 59.361 0.48409 53.247 52.99 53.474 -6.1147 53 26 3 0 0 0 0.3408 1 38149 38149 50.855 2.5092 1 53992000 + 70473 27741 47121 48145 81997 81997 0.036986690402500244 VLDRAKPF 8 Unmodified _VLDRAKPF_ 0 0 0 REV__nc|ENSG00000205918|Q6A1A2|PDPK2P REV__nc|ENSG00000205918|Q6A1A2|PDPK2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2798156738281 2 473.279452 944.544351 0.2373 0.00011231 0.011757 5.5641E-06 0.24905 0.00011787 473.2793781626101 42.948 0.25368 42.638 42.505 42.759 -0.31039 24 11 3 0 0 0 0.58902 1 22807 22807 26.884 0 1 15023000 + 70474 20509 47122 48146 81998 81998 0.06986081514037323 VLDSPLLK 8 Unmodified _VLDSPLLK_ 0 0 0 REV__ENSG00000215262|ENST00000399881|KCNU1 REV__ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.5457153320312 1 884.545145 883.537869 -0.38085 -0.00033688 0.82051 0.00072578 0.43966 0.0003889 884.5459498275242 58.409 0.29054 57.918 57.759 58.049 -0.49079 23 13 2 0 0 0 0.80676 1 31830 31830 2.5775 0 1 4343200 + 70475 24339 47123 48147 81999 81999 0.09144143562673435 VLDTGIYPI 9 Unmodified _VLDTGIYPI_ 0 0 0 REV__ENSG00000198727|ENST00000361789|MT-CYB REV__ENSG00000198727|ENST00000361789|MT-CYB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 495.2782897949219 2 495.778951 989.543348 0.89857 0.00044549 -1.6597 -0.00082282 -0.76108 -0.00037733 495.77814578117335 72.896 0.49719 66.72 66.412 66.909 -6.1757 41 25 2 0 0 0 0.11012 1 47768 47768 15.847 0 1 21052000 + 70476 24046 47124 48148 82000 82000 0.04815822354464672 VLDVNNQSF 9 Unmodified _VLDVNNQSF_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2672729492188 2 518.258914 1034.50327 NaN NaN NaN NaN NaN NaN NaN 48.808 1 48.808 48.308 49.308 0 0 0 0 0.32177 1 26807 26807 24.021 13.197 1 70477 16391 47125 48149 82001 82001 -0.01259724316082611 VLDVNNQSF 9 Unmodified _VLDVNNQSF_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000486354.1_1_10:5488686-5494790:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2604370117188 2 518.258914 1034.50327 NaN NaN NaN NaN NaN NaN NaN 48.852 1 48.852 48.352 49.352 0 0 0 0 0.16996 1 26835 26835 34.402 15.04 1 70478 16391 47125 48149 82002 82002 -0.01259724316082611 VLDWDYVA 8 Unmodified _VLDWDYVA_ 0 0 0 REV__ENSG00000115155|ENST00000272371|OTOF REV__ENSG00000115155|ENST00000272371|OTOF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7933349609375 2 490.739825 979.465098 0.87185 0.00042785 -2.9257 -0.0014358 -2.0539 -0.0010079 490.7380951322381 74.156 0.47836 73.681 73.362 73.84 -0.47588 35 21 2 0 0 0 8.7369 1 40552 40552 6.3541 0 1 1122900 + 70479 18953 47126 48150 82003 82003 -0.025456102307657602 VLDYVYIHF 9 Unmodified _VLDYVYIHF_ 0 0 0 REV__ENSG00000204271|ENST00000374919|SPIN3 REV__ENSG00000204271|ENST00000374919|SPIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2066955566406 3 390.206092 1167.59645 0.069595 2.7157E-05 1.6864 0.00065806 1.756 0.00068522 390.20664472147075 45.783 0.16254 45.755 45.642 45.804 -0.028011 10 7 2 0 0 0 0.53666 1 24639 24639 2.9952 1.5401 1 3165100 + 70480 18532 47127 48151 82004 82004 0.0193520013710895 VLEAQRLI 8 Unmodified _VLEAQRLI_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2927551269531 2 471.292559 940.570566 0.28366 0.00013368 -0.12646 -5.9602E-05 0.15719 7.4083E-05 471.29250228743797 46.063 0.24738 45.727 45.553 45.8 -0.33664 20 12 2 0 0 0 0.57045 1 24603 24603 28.487 2.1456 1 9365200 + 70481 19262 47128 48152 82005 82005 0.09790350685523208 VLEDEFPE 8 Unmodified _VLEDEFPE_ 0 0 0 ENSG00000074935|ENST00000368662|TUBE1;ENST00000604689.1_1_6:112397497-112397677:-|nuORF ENSG00000074935|ENST00000368662|TUBE1 ENSG00000074935|ENST00000368662|TUBE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4445190429688 1 977.446219 976.438943 0.27745 0.00027119 -0.17214 -0.00016826 0.10531 0.00010293 977.4459580106814 67.882 0.25177 67.882 67.719 67.971 0 20 11 2 0 0 0 0.64853 1 37807 37807 21.747 0 1 1187100 70482 1138 47129 48153 82006 82006 -0.050219241928971314 VLEDPPCFRF 10 Unmodified _VLEDPPCFRF_ 0 0 0 ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF ENST00000524414.5_1_1:52521992-52530613:+|nuORF ENST00000524414.5_1_1:52521992-52530613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.798095703125 2 611.799891 1221.58523 0.38312 0.00023439 -2.474 -0.0015136 -2.0909 -0.0012792 611.7982386105609 76.644 0.30463 76.695 76.544 76.848 0.05011 21 12 3 0 0 0 0.64183 1 42312 42312 6.2058 0 1 3151800 70483 14776 47130 48154 82007 82007 -0.016699452286502492 VLEDRRPTL 9 Unmodified _VLEDRRPTL_ 0 0 0 ENST00000313807.4_1_15:44829006-44829054:-|nuORF ENST00000313807.4_1_15:44829006-44829054:-|nuORF ENST00000313807.4_1_15:44829006-44829054:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.81640625 2 549.81693 1097.61931 1.154 0.00063448 -1.1184 -0.00061493 0.035559 1.9551E-05 549.8162041778975 21.393 0.36565 18.658 18.535 18.9 -2.7348 57 33 2 0 0 0 0.12424 1 11545 11545 30.637 3.7529 1 6955100 70484 11720 47131 48155 82008 82008 0.07440219254635849 VLEEFRDL 8 Unmodified _VLEEFRDL_ 0 0 0 REV__ENSG00000128346|ENST00000403305|C22orf23 REV__ENSG00000128346|ENST00000403305|C22orf23 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.3003234863281 2 510.771657 1019.52876 -0.080892 -4.1317E-05 4.4175 0.0022563 4.3366 0.002215 510.7735290432049 69.119 0.27733 68.639 68.485 68.763 -0.48071 14 11 2 0 0 0 8.7369 1 37747 37747 5.7604 0 1 585930 + 70485 19609 47132 48156 82009 82009 0.01977750206322071 VLEEFVPEI 9 Unmodified _VLEEFVPEI_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7898559570312 2 537.789515 1073.56448 0.25973 0.00013968 0.58916 0.00031684 0.84889 0.00045653 537.7898108105695 84.409 0.22271 84.409 84.319 84.542 0 14 10 2 0 0 0 0.30562 1 46800 46800 16.942 9.0321 1 551160 70486 2724 47133 48157 82010 82010 0.030637876633363703 VLEENYQELQ 10 Unmodified _VLEENYQELQ_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2071533203125 3 422.206709 1263.5983 0.47704 0.00020141 1.2283 0.00051861 1.7054 0.00072002 422.2072067086435 24.733 0.18185 21.85 21.739 21.921 -2.8831 16 9 2 0 0 0 0.56348 1 13468 13468 7.9454 0 1 4884800 70487 6517 47134 48158 82011 82011 -0.022958356355729848 VLEEVCIDE 9 Unmodified _VLEEVCIDE_ 0 0 0 REV__ENSG00000139618|ENST00000380152|BRCA2 REV__ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5013122558594 3 350.167086 1047.47943 0.1308 4.5801E-05 1.011 0.00035403 1.1418 0.00039983 350.50178036492525 58.943 0.32699 58.943 58.768 59.095 0 33 14 3 0 0 0 0.41742 1 32795 32795 7.609 1.8771 1 3453600 + 70488 20418 47135 48159 82012 82012 -0.04241325864791179 VLEGTLPQT 9 Unmodified _VLEGTLPQT_ 0 0 0 REV__ENST00000399000.7_1_21:38597847-38603826:-|nuORF REV__ENST00000399000.7_1_21:38597847-38603826:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2657165527344 2 479.266207 956.517862 NaN NaN NaN NaN NaN NaN NaN 20.845 1 20.845 20.345 21.345 0 0 0 0 0.34649 1 10509 10509 22.736 2.2827 1 + 70489 21388 47136 48160 82013 82013 0.03786347832055981 VLEIFCNVL 9 Unmodified _VLEIFCNVL_ 0 0 0 REV__ENSG00000127362|ENST00000247879|TAS2R3 REV__ENSG00000127362|ENST00000247879|TAS2R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2887573242188 2 525.288628 1048.5627 0.61207 0.00032152 0.51381 0.0002699 1.1259 0.00059141 525.2889123476349 74.291 0.29516 73.815 73.638 73.933 -0.47588 18 11 2 0 0 0 0.14602 1 40638 40638 28.487 3.813 1 814130 + 70490 19578 47137 48161 82014 82014 0.04036455373739045 VLEINPAA 8 Unmodified _VLEINPAA_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.7371520996094 2 413.737086 825.459619 -0.09966 -4.1233E-05 -0.84425 -0.0003493 -0.94391 -0.00039053 413.73678965521816 69.991 0.56115 69.991 69.816 70.377 0 122 58 3 0 0 0 0.40035 1 39047 39047 44.407 2.3125 1 17698000 70491 9261 47138 48162 82015 82015 0.039907109774162564 VLEINPAA 8 Unmodified _VLEINPAA_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.73681640625 2 413.737086 825.459619 0.24447 0.00010115 -1.0494 -0.00043419 -0.80496 -0.00033304 413.7367759529679 70.493 0.465 70.015 69.821 70.286 -0.47736 85 38 3 0 0 0 0.48669 1 38499 38499 36.044 1.9418 1 21341000 70492 9261 47138 48162 82016 82016 0.039907109774162564 VLEINPAA 8 Unmodified _VLEINPAA_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.7372131347656 2 413.737086 825.459619 0.59511 0.00024622 -0.56431 -0.00023348 0.030801 1.2743E-05 413.7370055099218 78.331 1.0083 72.155 71.754 72.762 -6.1757 105 60 2 0 0 0 0.48669 1 51344 51344 36.044 1.9418 1 76423000 70493 9261 47138 48162 82017 82017 0.039907109774162564 VLEINPAA 8 Unmodified _VLEINPAA_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 413.737086 825.459619 0.1766 7.3064E-05 0.14061 5.8176E-05 0.31721 0.00013124 413.73738372496894 70.037 0.30913 70.068 69.92 70.229 0.030914 0.043491 0.00077449 NaN 44.407 21 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2479700 70494 9261 47138 48162 0.039907109774162564 VLEINPAAL 9 Unmodified _VLEINPAAL_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2799377441406 2 470.279118 938.543683 0.26092 0.0001227 -0.17585 -8.2699E-05 0.085068 4.0006E-05 470.2786129080309 70.485 0.72757 70.008 69.798 70.526 -0.47736 128 50 3 0 0 0 0.16226 1 38707 38707 26.884 1.4843 1 101710000 70495 9261 47139 48163 82018 82018 0.0719524207431732 VLEINPAAL 9 Unmodified _VLEINPAAL_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2785339355469 2 470.279118 938.543683 0.21868 0.00010284 -0.71538 -0.00033643 -0.4967 -0.00023359 470.27848032924067 70.037 0.34641 70.068 69.883 70.229 0.030922 36 17 3 0 0 0 0.16226 1 38524 38524 26.884 5.137 1 12040000 70496 9261 47139 48163 82019 82019 0.0719524207431732 VLEINPAAL 9 Unmodified _VLEINPAAL_ 0 0 0 nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;ENST00000467418.1_1_6:170058029-170062491:-|nuORF;ENST00000546525.5_1_6:170034618-170062491:-|nuORF;nc|ENSG00000184465|A2RRH5-2|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 nc|ENSG00000184465|A2RRH5|WDR27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2791442871094 2 470.279118 938.543683 0.30672 0.00014424 0.80577 0.00037893 1.1125 0.00052318 470.2791491885973 78.36 1.3542 72.185 71.702 73.056 -6.1757 187 79 4 0 0 0 0.095405 1 51415 51415 34.102 3.8776 1 353150000 70497 9261 47139 48163 82020 82020 0.0719524207431732 VLEISSLFI 9 Unmodified _VLEISSLFI_ 0 0 0 nc|ENSG00000138193|Q9P212-2|PLCE1;ENSG00000138193|ENST00000371380|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 nc|ENSG00000138193|Q9P212-2|PLCE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2758178710938 2 510.802426 1019.5903 0.28981 0.00014803 -1.2521 -0.0006396 -0.96234 -0.00049156 510.8015325816272 53.704 0.13314 53.253 53.128 53.261 -0.45173 8 6 2 0 0 0 0.18521 1 29000 29000 11.64 3.047 1 1215700 70498 5033 47140 48164 82021 82021 0.08128681905623125 VLELEPGNVK 10 Unmodified _VLELEPGNVK_ 0 0 0 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1;nc|ENSG00000104450|Q07617-2|SPAG1 ENSG00000104450|ENST00000388798|SPAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.5443725585938 3 366.544885 1096.61282 0.79854 0.0002927 -1.4901 -0.00054619 -0.69157 -0.00025349 366.5443164432224 11.941 0.11095 9.4587 9.4012 9.5122 -2.482 20 15 2 0 0 0 0.69626 1 6012 6012 3.3196 0.58445 1 1571500 70499 2210;16099 47141 48165 82022 82022 0.06838281303225813 VLENYYKDF 9 Unmodified _VLENYYKDF_ 0 0 0 nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1 nc|ENSG00000173218|Q8TAA9-2|VANGL1 nc|ENSG00000173218|Q8TAA9-2|VANGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7911376953125 2 595.790047 1189.56554 -0.37632 -0.00022421 2.7715 0.0016512 2.3952 0.001427 595.7911667057613 35.88 0.18408 35.657 35.546 35.731 -0.2224 16 7 3 0 0 0 0.51218 1 18826 18826 6.7232 0.99131 1 2976100 70500 8301 47142 48166 82023 82023 -0.021659979677679075 VLEPFHYGYWE 11 Unmodified _VLEPFHYGYWE_ 0 0 0 REV__ENST00000484998.5_1_20:2635830-2636687:+|nuORF REV__ENST00000484998.5_1_20:2635830-2636687:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 720.3333740234375 2 720.335153 1438.65575 NaN NaN NaN NaN NaN NaN NaN 51.089 1 51.089 50.589 51.589 0 0 0 0 0.94184 1 28196 28196 1.1933 0.735 1 + 70501 18165 47143 48167 82024 82024 -0.046029486393308616 VLEPWERSMFN 11 Unmodified _VLEPWERSMFN_ 0 0 0 ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB ENSG00000196542|ENST00000620149|SPTSSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.3377685546875 2 704.339912 1406.66527 NaN NaN NaN NaN NaN NaN NaN 56.542 1 56.056 55.556 56.556 -0.48554 0 0 0 0.9406 1 30706 30706 2.086 0.24177 1 70502 9836 47144 48168 82025 82025 -0.021795036254616207 VLEREGGGEEE 11 Unmodified _VLEREGGGEEE_ 0 0 0 REV__ENST00000375215.3_1_17:73629550-73630090:+|nuORF REV__ENST00000375215.3_1_17:73629550-73630090:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.278076171875 2 602.278032 1202.54151 NaN NaN NaN NaN NaN NaN NaN 5.5589 1 5.56 5.06 6.06 0.0010915 0 0 0 0.9435 1 2798 2798 0 0 1 + 70503 26198 47145 48169 82026 82026 -0.05165883192057663 VLESAEPG 8 Unmodified _VLESAEPG_ 0 0 0 nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23;nc|ENSG00000107736|Q9H251-4|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 nc|ENSG00000107736|Q9H251-2|CDH23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.4002075195312 1 801.398875 800.391599 0.27182 0.00021783 0.27997 0.00022437 0.55178 0.0004422 801.3990265011709 49.951 0.21585 49.951 49.793 50.009 0 13 9 2 0 0 0 0.18881 1 27508 27508 74.396 0 1 1053700 70504 2512 47146 48170 82027 82027 -0.016581586732399956 VLETATRTL 9 Unmodified _VLETATRTL_ 0 0 0 ENST00000402802.7_1_7:537671-537887:-|nuORF ENST00000402802.7_1_7:537671-537887:-|nuORF ENST00000402802.7_1_7:537671-537887:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7914428710938 2 502.292756 1002.57096 0.17183 8.631E-05 -2.9507 -0.0014821 -2.7789 -0.0013958 502.2906254656228 83.276 0.16644 82.779 82.698 82.864 -0.49751 9 6 2 0 0 0 0.19298 1 45619 45619 13.508 0 1 327370 70505 12897 47147 48171 82028 82028 0.06977725614717656 VLEWAGAE 8 Unmodified _VLEWAGAE_ 0 0 0 ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF ENST00000293230.9_1_17:74523460-74524138:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 874.4296264648438 1 874.430509 873.423233 -0.17997 -0.00015737 -0.19341 -0.00016913 -0.37339 -0.0003265 874.430374820366 91.648 0.38927 91.167 90.962 91.351 -0.48092 69 25 3 0 0 0 0.61462 1 50122 50122 24.674 0 1 7074900 70506 11477 47148 48172 82029 82029 -0.018541659192919724 VLFCPPIR 8 Unmodified _VLFCPPIR_ 0 0 0 REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF REV__ENST00000480436.5_1_20:13415759-13610725:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7726135253906 2 472.772948 943.531344 NaN NaN NaN NaN NaN NaN NaN 7.9217 1 7.8301 7.3301 8.3301 -0.09156 0 0 0 0.97444 1 3892 3892 0.79363 0 1 + 70507 17832 47149 48173 82030 82030 0.057319271302844754 VLFEDVYEL 9 Unmodified _VLFEDVYEL_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7868041992188 2 563.786973 1125.55939 0.30661 0.00017286 0.54771 0.00030879 0.85432 0.00048166 563.7872780775091 88.416 0.33808 88.416 88.238 88.576 0 40 16 3 0 0 0 0.53557 2 48891 48891;48984 8.5933 3.3626 1 1455900 70508 5814 47150 48174 82031;82032 82031 0.001634838007248618 VLFEDVYEL 9 Unmodified _VLFEDVYEL_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7874755859375 2 563.786973 1125.55939 0.6292 0.00035473 1.9289 0.0010875 2.5581 0.0014422 563.7880811587293 88.961 0.31506 88.457 88.273 88.589 -0.50423 24 13 2 0 0 0 0.53557 1 48700 48700 8.5933 3.3626 1 982470 70509 5814 47150 48174 82033 82033 0.001634838007248618 VLFEDVYEL 9 Unmodified _VLFEDVYEL_ 0 0 0 nc|ENSG00000147044|O14936-3|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-2|CASK;ENSG00000147044|ENST00000378163|CASK;ENST00000468986.6_1_X:41602925-41782241:-|nuORF;ENST00000477823.1_1_X:41646429-41782226:-|nuORF nc|ENSG00000147044|O14936-3|CASK nc|ENSG00000147044|O14936-3|CASK MSMS AL20221201_MKP_PDAC_01 4 563.786865234375 2 563.786973 1125.55939 NaN NaN NaN NaN NaN NaN NaN 99.171 1 92.995 92.495 93.495 -6.1757 0 0 0 0.3031 1 65965 65965 34.102 10.954 1 70510 5814 47150 48174 82034 82034 0.001634838007248618 VLFFFFFL 8 Unmodified _VLFFFFFL_ 0 0 0 ENST00000289968.10_1_16:24930781-24931099:-|nuORF ENST00000289968.10_1_16:24930781-24931099:-|nuORF ENST00000289968.10_1_16:24930781-24931099:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.3028564453125 2 540.301865 1078.58918 NaN NaN NaN NaN NaN NaN NaN 81.336 1 81.336 80.836 81.836 0 0 0 0 0.97444 1 45145 45145 0.79363 0 1 70511 11458 47151 48175 82035 82035 0.053025123273755526 VLFGVETHV 9 Unmodified _VLFGVETHV_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7764282226562 2 500.776742 999.538931 NaN NaN NaN NaN NaN NaN NaN 56.676 1 56.191 55.691 56.691 -0.48554 0 0 0 0.26667 1 30787 30787 26.884 12.302 1 70512 940 47152 48176 82036 82036 0.03914357931557788 VLFGVETHV 9 Unmodified _VLFGVETHV_ 0 0 0 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 ENSG00000066583|ENST00000173527|ISOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7779846191406 2 500.776742 999.538931 2.2019 0.0011027 -0.66197 -0.0003315 1.54 0.00077117 500.77633419289026 62.61 0.42774 56.434 56.248 56.676 -6.1757 36 21 2 0 0 0 0.016184 2 40364 40364;40505 67.344 37.119 1 15274000 70513 940 47152 48176 82037;82038 82037 0.03914357931557788 VLFHAREL 8 Unmodified _VLFHAREL_ 0 0 0 REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7850341796875 2 492.784902 983.55525 0.69994 0.00034492 -0.69716 -0.00034355 0.0027776 1.3688E-06 492.78469901776714 52.455 0.24828 52.021 51.891 52.139 -0.43367 18 12 2 0 0 0 0.66338 1 28345 28345 20.454 1.0146 1 6239300 + 70514 19786 47153 48177 82039 82039 0.06281483888312778 VLFHAREL 8 Unmodified _VLFHAREL_ 0 0 0 REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.7852478027344 2 492.784902 983.55525 0.70233 0.0003461 -0.61109 -0.00030113 0.091244 4.4963E-05 492.78465501769614 52.09 0.31423 52.031 51.896 52.21 -0.058918 37 14 3 0 0 0 0.48669 1 28188 28188 36.044 7.5574 1 13167000 + 70515 19786 47153 48177 82040 82040 0.06281483888312778 VLFHAREL 8 Unmodified _VLFHAREL_ 0 0 0 REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7845458984375 2 492.784902 983.55525 0.74867 0.00036893 -0.52445 -0.00025844 0.22422 0.00011049 492.78445139210504 57.034 0.45905 51.057 50.811 51.27 -5.9769 41 27 2 0 0 0 0.48669 1 36494 36494 36.044 7.5574 1 49644000 + 70516 19786 47153 48177 82041 82041 0.06281483888312778 VLFHAREL 8 Unmodified _VLFHAREL_ 0 0 0 REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF REV__ENST00000457023.1_1_3:15247773-15262489:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 492.784902 983.55525 0.70233 0.0003461 -0.61109 -0.00030113 0.091244 4.4963E-05 492.78465501769614 52.09 0.31423 52.031 51.896 52.21 -0.058918 0.0047858 4.0086E-05 NaN 36.044 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 13167000 + 70517 19786 47153 48177 0.06281483888312778 VLFHQWLQS 9 Unmodified _VLFHQWLQS_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1;nc|ENSG00000179832|Q8NDA8-7|MROH1;nc|ENSG00000179832|Q8NDA8-6|MROH1 ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5264282226562 3 386.541586 1156.60293 1.406 0.00054349 1.0838 0.00041893 2.4898 0.00096243 386.5419781740548 19.527 0.77615 16.871 16.66 17.436 -2.6564 219 58 6 0 0 0 0.46162 1 10233 10233 9.544 9.544 1 1192200000 70518 8857 47154 48178 82042 82042 0.030891380885123 VLFISMKLFVI 11 Unmodified _VLFISMKLFVI_ 0 0 0 REV__ENST00000340020.10_1_1:222842510-222842603:-|nuORF REV__ENST00000340020.10_1_1:222842510-222842603:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.27001953125 3 437.269927 1308.78795 0.92254 0.0004034 0.33091 0.0001447 1.2534 0.00054809 437.2700709398488 22.152 0.51669 19.417 19.14 19.657 -2.7348 97 28 5 0 0 0 0.4121 2 11994 11886;11994 20.871 3.8226 1 55966000 + 70519 25686 47155 48179 82043;82044 82044 0.14590984843880506 VLFISMKLFVI 11 Unmodified _VLFISMKLFVI_ 0 0 0 REV__ENST00000340020.10_1_1:222842510-222842603:-|nuORF REV__ENST00000340020.10_1_1:222842510-222842603:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 437.269927 1308.78795 -0.30547 -0.00013357 -0.10044 -4.3918E-05 -0.40591 -0.00017749 437.26988120929065 19.679 0.16547 19.679 19.601 19.766 0 0.12051 -0.00050647 NaN 20.871 59 28 3 NaN NaN NaN NaN 0 NaN NaN 0 1444700 + 70520 25686 47155 48179 0.14590984843880506 VLFKQFGSPL 10 Unmodified _VLFKQFGSPL_ 0 0 0 REV__ENST00000458542.1_1_3:25791186-25791384:+|nuORF REV__ENST00000458542.1_1_3:25791186-25791384:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2227783203125 3 379.221853 1134.64373 1.0396 0.00039425 -1.4363 -0.00054466 -0.39663 -0.00015041 379.22215078344334 53.248 0.33864 47.444 47.251 47.59 -5.8042 26 20 2 0 0 0 0.16524 1 33615 33615 26.021 9.4548 1 22345000 + 70521 27278 47156 48180 82045 82045 0.08179479408136103 VLFKVLFLI 9 Unmodified _VLFKVLFLI_ 0 0 0 ENST00000425586.5_1_13:50618805-50623788:-|nuORF ENST00000425586.5_1_13:50618805-50623788:-|nuORF ENST00000425586.5_1_13:50618805-50623788:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.364990234375 2 546.364996 1090.71544 1.4869 0.00081241 1.434 0.0007835 2.921 0.0015959 546.36549828845 103.15 0.14129 96.972 96.915 97.056 -6.1757 99 39 3 0 0 0 0.58466 1 69160 69160 2.3027 0 1 9995600 70522 13165 47157 48181 82046 82046 0.17371018832659502 VLFLFSART 9 Unmodified _VLFLFSART_ 0 0 0 ENST00000442760.2_1_13:45914392-45914515:-|nuORF ENST00000442760.2_1_13:45914392-45914515:-|nuORF ENST00000442760.2_1_13:45914392-45914515:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8731689453125 3 351.874565 1052.60187 NaN NaN NaN NaN NaN NaN NaN 18.923 1 18.929 18.429 19.429 0.0060463 0 0 0 0.77016 1 9608 9608 7.1017 0 1 70523 13413 47158 48182 82047 82047 0.07766923719600527 VLFLIFLLWK 10 Unmodified _VLFLIFLLWK_ 0 0 0 ENSG00000163870|ENST00000355552|TPRA1;nc|ENSG00000163870|Q86W33-2|TPRA1;nc|ENSG00000163870|Q86W33-3|TPRA1 ENSG00000163870|ENST00000355552|TPRA1 ENSG00000163870|ENST00000355552|TPRA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.412353515625 2 646.412478 1290.8104 NaN NaN NaN NaN NaN NaN NaN 103.5 1 103.46 102.96 103.96 -0.047928 0 0 0 1.0061 1 57483 57483 0 0 1 70524 7086 47159 48183 82048 82048 0.1766295230384003 VLFLNIQKQ 9 Unmodified _VLFLNIQKQ_ 0 0 0 ENST00000290075.10_1_8:23423911-23424199:+|nuORF ENST00000290075.10_1_8:23423911-23424199:+|nuORF ENST00000290075.10_1_8:23423911-23424199:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8904113769531 3 368.225486 1101.65463 0.45592 0.00016788 0.18862 6.9454E-05 0.64454 0.00023734 368.2255960191007 58.834 0.47723 58.773 58.486 58.964 -0.060722 76 23 4 0 0 0 0.60285 1 31938 31938 1.1933 0.12188 1 31725000 70525 11460 47160 48184 82049 82049 0.10786881782405544 VLFLVPTE 8 Unmodified _VLFLVPTE_ 0 0 0 nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL nc|ENSG00000170835|P19835-2|CEL nc|ENSG00000170835|P19835-2|CEL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2685546875 2 459.270761 916.52697 NaN NaN NaN NaN NaN NaN NaN 34.467 1 34.276 33.776 34.776 -0.19131 0 0 0 0.97444 1 18004 18004 5.2307 0 1 70526 8029 47161 48185 82050 82050 0.06536741188358519 VLFLYDIF 8 Unmodified _VLFLYDIF_ 0 0 0 ENST00000589515.2_1_19:2343134-2351610:+|nuORF;nc|ENSG00000005206|Q8TCT7-4|SPPL2B;ENSG00000005206|ENST00000613503|SPPL2B ENST00000589515.2_1_19:2343134-2351610:+|nuORF ENST00000589515.2_1_19:2343134-2351610:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.2841186523438 2 515.286411 1028.55827 NaN NaN NaN NaN NaN NaN NaN 49.127 1 43.731 43.231 44.231 -5.3961 0 0 0 0.59893 1 30667 30667 34.187 0.74243 1 70527 303 47162 48186 82051 82051 0.045133142224585754 VLFNGWVL 8 Unmodified _VLFNGWVL_ 0 0 0 REV__ENST00000415890.1_1_6:37786440-37786944:-|nuORF REV__ENST00000415890.1_1_6:37786440-37786944:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2726745605469 2 474.271096 946.527639 NaN NaN NaN NaN NaN NaN NaN 17.563 1 17.563 17.063 18.063 0 0 0 0 0.97444 1 8664 8664 0.69038 0 1 + 70528 26762 47163 48187 82052 82052 0.052235806280805264 VLFPEPLTW 9 Unmodified _VLFPEPLTW_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3024291992188 2 551.302593 1100.59063 2.9394 0.0016205 -2.415 -0.0013314 0.52441 0.00028911 551.3013060722226 99.773 0.10461 99.736 99.666 99.771 -0.036301 9 3 3 0 0 0 0.078417 1 55430 55430 38.151 22.304 1 6348400 70529 5248 47164 48188 82053 82053 0.04436101625447009 VLFPEPLTW 9 Unmodified _VLFPEPLTW_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.3037109375 2 551.302593 1100.59063 1.3115 0.00072301 -2.204 -0.0012151 -0.89252 -0.00049205 551.8022075007499 101.07 0.17661 94.892 94.78 94.956 -6.1757 29 9 4 0 0 0 0.012148 1 67722 67722 74.423 39.491 1 173770000 70530 5248 47164 48188 82054 82054 0.04436101625447009 VLFPISPV 8 Unmodified _VLFPISPV_ 0 0 0 REV__ENST00000585554.5_1_19:36235732-36236292:-|nuORF REV__ENST00000585554.5_1_19:36235732-36236292:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 871.527099609375 1 871.528767 870.521491 0.7096 0.00061844 -1.2559 -0.0010946 -0.54635 -0.00047616 871.5278255283565 102.03 0.097237 95.85 95.78 95.877 -6.1757 6 4 2 0 0 0 0.37649 1 68492 68492 46.921 3.9529 1 2175900 + 70531 29097 47165 48189 82055 82055 0.08105062396566609 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2635498046875 2 457.264425 912.514297 NaN NaN NaN NaN NaN NaN NaN 83.034 1 83.034 82.534 83.534 0 0 0 0 0.97444 1 46054 46054 0.79363 0 1 + 70532 23516;20820;22002 47166 48190 82056 82056 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2659912109375 2 457.264425 912.514297 0.59943 0.0002741 -0.03694 -1.6892E-05 0.56249 0.00025721 457.2643374200096 67.967 0.51387 67.992 67.654 68.168 0.025146 40 24 2 0 0 0 0.80975 1 37261 37261 0.79363 0 1 2308000 + 70533 23516;20820;22002 47166 48190 82057 82057 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2654724121094 2 457.264425 912.514297 1.253 0.00057294 0.15644 7.1532E-05 1.4094 0.00064447 457.26420862946753 82.733 0.64752 82.795 82.321 82.969 0.062004 45 24 3 0 0 0 0.80975 2 45690 45690;45792 0.79363 0 1 5152100 + 70534 23516;20820;22002 47166 48190 82058;82059 82058 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2649841308594 2 457.264425 912.514297 0.71954 0.00032902 -0.056535 -2.5852E-05 0.663 0.00030317 457.26423058311053 83.183 0.3352 83.246 83.077 83.412 0.063171 30 12 3 0 0 0 0.80975 1 46001 46001 0.79363 0 1 10412000 + 70535 23516;20820;22002 47166 48190 82060 82060 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2650451660156 2 457.264425 912.514297 NaN NaN NaN NaN NaN NaN NaN 67.303 1 67.321 66.821 67.821 0.018028 0 0 0 0.9706 1 36943 36943 6.3541 0 1 + 70536 23516;20820;22002 47166 48190 82061 82061 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 457.264425 912.514297 0.40107 0.0001834 0.40696 0.00018609 0.80803 0.00036948 457.2645024804598 83.706 0.57307 83.208 82.914 83.487 -0.49751 -0.01899 0.0002175 NaN 0.79363 69 23 4 NaN NaN NaN NaN 0 NaN NaN 0 18590000 + 70537 23516;20820;22002 47166 48190 0.054540065244850666 VLFPPPML 8 Unmodified _VLFPPPML_ 0 0 0 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1;REV__ENSG00000146247|ENST00000275034|PHIP;REV__nc|ENSG00000165288|Q6RI45-3|BRWD3 REV__nc|ENSG00000185658|Q9NSI6-3|BRWD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 457.264425 912.514297 0.71954 0.00032902 -0.056535 -2.5852E-05 0.663 0.00030317 457.26423058311053 83.183 0.3352 83.246 83.077 83.412 0.063171 0.01899 -0.00020638 NaN 0.79363 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 10412000 + 70538 23516;20820;22002 47166 48190 0.054540065244850666 VLFSKAQTYEL 11 Unmodified _VLFSKAQTYEL_ 0 0 0 ENSG00000125820|ENST00000377142|NKX2-2 ENSG00000125820|ENST00000377142|NKX2-2 ENSG00000125820|ENST00000377142|NKX2-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.8524780273438 2 649.853178 1297.6918 -0.028586 -1.8577E-05 0.78251 0.00050851 0.75392 0.00048994 649.8535011494479 88.995 0.34592 88.995 88.84 89.186 0 60 20 4 0 0 0 0.62338 1 49202 49202 10.151 1.1743 1 4145500 70539 3889 47167 48191 82062 82062 0.054865085375240596 VLFSPDPA 8 Unmodified _VLFSPDPA_ 0 0 0 ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 845.43994140625 1 845.440346 844.433069 -1.3675 -0.0011562 0.406 0.00034325 -0.96153 -0.00081292 845.4407027770375 77.884 0.42552 77.401 77.166 77.591 -0.4826 77 32 3 0 0 0 0.19755 1 42652 42652 70.865 3.8292 1 17898000 70540 14643 47168 48192 82063 82063 0.004630220860804002 VLFSPDPA 8 Unmodified _VLFSPDPA_ 0 0 0 ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF ENST00000513876.3_1_4:165878121-165878319:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 845.440185546875 1 845.440346 844.433069 0.1028 8.691E-05 0.53577 0.00045296 0.63857 0.00053987 845.4407432851104 85.462 0.68596 79.287 79.008 79.694 -6.1757 90 41 3 0 0 0 0.17881 1 56409 56409 78.445 11.409 1 131740000 70541 14643 47168 48192 82064 82064 0.004630220860804002 VLFTDEGVP 9 Unmodified _VLFTDEGVP_ 0 0 0 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 ENSG00000160194|ENST00000354250|NDUFV3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 976.4988403320312 1 976.498589 975.491313 0.35458 0.00034624 0.34287 0.00033481 0.69745 0.00068106 976.4987312424101 99.594 0.13574 93.418 93.354 93.49 -6.1757 13 8 2 0 0 0 0.052168 1 66366 66366 44.407 0 1 23131000 70542 6694 47169 48193 82065 82065 0.002586589407201245 VLFTGIVAL 9 Unmodified _VLFTGIVAL_ 0 0 0 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 ENSG00000184743|ENST00000398868|ATL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 932.582275390625 1 932.581531 931.574254 1.6384 0.001528 -0.28312 -0.00026404 1.3553 0.0012639 932.5806722179835 100.93 0.096413 94.757 94.701 94.798 -6.1757 7 5 2 0 0 0 0.0086179 1 67636 67636 89.427 7.5627 1 12883000 70543 9288 47170 48194 82066 82066 0.10573020459366944 VLFTSVNQMK 10 Unmodified _VLFTSVNQMK_ 0 0 0 ENST00000541076.6_1_12:123694706-123699368:-|nuORF ENST00000541076.6_1_12:123694706-123699368:-|nuORF ENST00000541076.6_1_12:123694706-123699368:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.3229370117188 2 583.815541 1165.61653 0.12688 7.4075E-05 1.3474 0.00078663 1.4743 0.0008607 583.815524454166 68.951 0.60181 68.47 68.161 68.763 -0.48071 81 26 4 0 0 0 0.46514 1 37577 37577 18.146 0.011366 1 29693000 70544 15040 47171 48195 82067 82067 0.04034627805413038 VLFVVPLII 9 Unmodified _VLFVVPLII_ 0 0 0 nc|ENSG00000126251|O15529|GPR42;ENSG00000185897|ENST00000327809|FFAR3;ENSG00000126251|ENST00000454971|GPR42 nc|ENSG00000126251|O15529|GPR42 nc|ENSG00000126251|O15529|GPR42 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.8442687988281 2 506.843897 1011.67324 1.3465 0.00068244 0.24157 0.00012244 1.588 0.00080488 506.84385875129715 102.91 0.076637 96.737 96.7 96.777 -6.1757 50 20 3 0 0 0 0.047696 1 69030 69030 45.75 0 1 22211000 70545 3938 47172 48196 82068 82068 0.16787043424290005 VLFWFQTSL 9 Unmodified _VLFWFQTSL_ 0 0 0 ENST00000421109.6_1_15:96881263-96881344:+|nuORF ENST00000421109.6_1_15:96881263-96881344:+|nuORF ENST00000421109.6_1_15:96881263-96881344:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.8073120117188 2 570.808042 1139.60153 0.10508 5.9979E-05 -1.5684 -0.00089525 -1.4633 -0.00083527 570.807273405104 72.769 0.25974 72.811 72.661 72.921 0.041733 20 12 2 0 0 0 0.094149 1 40047 40047 34.402 2.0962 1 4179900 70546 13107 47173 48197 82069 82069 0.03731503999756569 VLFYFPTF 8 Unmodified _VLFYFPTF_ 0 0 0 REV__nc|ENSG00000067141|Q92859-3|NEO1 REV__nc|ENSG00000067141|Q92859-3|NEO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 517.79833984375 2 517.273304 1032.53206 0.22084 0.00011424 -0.66487 -0.00034392 -0.44403 -0.00022969 517.2737875502664 78.603 0.16393 72.428 72.384 72.548 -6.1757 16 10 2 0 0 0 8.7369 1 51522 51522 9.3474 0 1 6579100 + 70547 17414 47174 48198 82070 82070 0.017090450509840593 VLFYFSLTF 9 Unmodified _VLFYFSLTF_ 0 0 0 ENST00000336314.8_2_5:154193974-154194505:+|nuORF ENST00000336314.8_2_5:154193974-154194505:+|nuORF ENST00000336314.8_2_5:154193974-154194505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8027954101562 2 568.804968 1135.59538 0.65106 0.00037033 -3.1328 -0.001782 -2.4818 -0.0014116 568.8027715947144 86.264 0.28779 85.761 85.57 85.858 -0.50318 16 11 2 0 0 0 0.49272 1 47173 47173 7.9102 1.187 1 320500 70548 11909 47175 48199 82071 82071 0.033009857682145594 VLFYKAYHF 9 Unmodified _VLFYKAYHF_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5474243164062 3 396.546449 1186.61752 0.32727 0.00012978 0.25335 0.00010046 0.58062 0.00023024 396.5466539970344 16.189 0.14803 13.633 13.508 13.656 -2.557 43 25 2 0 0 0 0.54444 1 8317 8317 5.2969 3.3905 1 3458800 70549 10907 47176 48200 82072 82072 0.03167210236642859 VLFYKAYHF 9 Unmodified _VLFYKAYHF_ 0 0 0 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 ENSG00000275591|ENST00000618742|XKR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5472106933594 3 396.546449 1186.61752 0.3242 0.00012856 -0.16312 -6.4685E-05 0.16108 6.3875E-05 396.5465217069612 16.313 0.18921 13.756 13.65 13.839 -2.557 58 24 3 0 0 0 0.39863 1 8421 8421 8.1555 1.0538 1 5322500 70550 10907 47176 48200 82073 82073 0.03167210236642859 VLGAFESSF 9 Unmodified _VLGAFESSF_ 0 0 0 ENSG00000172037|ENST00000305544|LAMB2;ENST00000477225.1_1_3:49160862-49161360:-|nuORF ENSG00000172037|ENST00000305544|LAMB2 ENSG00000172037|ENST00000305544|LAMB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2786865234375 2 478.739825 955.465098 -0.051444 -2.4628E-05 2.2367 0.0010708 2.1853 0.0010462 478.74085865445727 40.522 0.40674 40.522 40.333 40.739 0 34 21 3 0 0 0 0.17666 1 21693 21693 13.508 3.3245 1 2597400 70551 8175 47177 48201 82074 82074 -0.01441610230756396 VLGAMRRVF 9 Unmodified _VLGAMRRVF_ 0 0 0 ENSG00000196071|ENST00000358120|OR2L13 ENSG00000196071|ENST00000358120|OR2L13 ENSG00000196071|ENST00000358120|OR2L13 MSMS AL20221201_MKP_PDAC_01 4 524.8086547851562 2 524.807854 1047.60115 NaN NaN NaN NaN NaN NaN NaN 79.364 1 73.189 72.689 73.689 -6.1757 0 0 0 0.57317 1 51998 51998 13.508 0 1 70552 9752 47178 48202 82075 82075 0.07925805798913643 VLGARQAEPL 10 Unmodified _VLGARQAEPL_ 0 0 0 REV__ENSG00000105392|ENST00000221996|CRX REV__ENSG00000105392|ENST00000221996|CRX MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.208740234375 3 351.873224 1052.59784 1.8582 0.00065385 0.11613 4.0865E-05 1.9743 0.00069471 351.87330620813844 20.586 0.57838 17.893 17.627 18.205 -2.693 103 34 4 0 0 0 0.42143 1 10896 10896 17.863 3.0253 1 32670000 + 70553 18421 47179 48203 82076 82076 0.07364834225904815 VLGARRPLARV 11 Unmodified _VLGARRPLARV_ 0 0 0 REV__nc|ENSG00000152234|P25705-3|ATP5F1A REV__nc|ENSG00000152234|P25705-3|ATP5F1A MSMS AL20221201_MKP_PDAC_01 4 604.3922119140625 2 604.390931 1206.76731 NaN NaN NaN NaN NaN NaN NaN 102.74 1 96.569 96.069 97.069 -6.1757 0 0 0 0.9428 1 68933 68933 0.35063 0 1 + 70554 21109 47180 48204 82077 82077 0.17219575299100143 VLGDRSGIY 9 Unmodified _VLGDRSGIY_ 0 0 0 REV__ENSG00000153993|ENST00000284136|SEMA3D REV__ENSG00000153993|ENST00000284136|SEMA3D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2618713378906 2 490.263999 978.513445 NaN NaN NaN NaN NaN NaN NaN 71.227 1 71.227 70.727 71.727 0 0 0 0 0.82396 1 39676 39676 4.756 1.8668 1 + 70555 21202 47181 48205 82078 82078 0.02332883409144415 VLGEFLKEI 9 Unmodified _VLGEFLKEI_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.30859375 2 524.307875 1046.6012 0.61177 0.00032076 0.27381 0.00014356 0.88558 0.00046432 524.3080217220511 74.327 0.26022 73.851 73.714 73.974 -0.47588 23 10 3 0 0 0 0.14 1 40664 40664 29.082 7.3349 1 1322300 70556 2096 47182 48206 82079 82079 0.07976084279903262 VLGEFLKEI 9 Unmodified _VLGEFLKEI_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.306884765625 2 524.307875 1046.6012 1.2472 0.00065391 -1.0316 -0.00054088 0.21557 0.00011303 524.3070215011735 95.295 0.27798 89.119 88.969 89.247 -6.1757 26 15 2 0 0 0 0.010301 1 63130 63130 79.596 24.823 1 9181300 70557 2096 47182 48206 82080 82080 0.07976084279903262 VLGEFLKEI 9 Unmodified _VLGEFLKEI_ 0 0 0 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 ENSG00000103043|ENST00000261776|VAC14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.307875 1046.6012 0.25585 0.00013414 -2.3199 -0.0012164 -2.0641 -0.0010822 524.8086838885754 73.822 0.20829 73.866 73.755 73.963 0.043976 0.0073734 -0.0026298 NaN 29.082 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1775000 70558 2096 47182 48206 0.07976084279903262 VLGEKINIL 9 Unmodified _VLGEKINIL_ 0 0 0 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1;ENSG00000120942|ENST00000376810|UBIAD1 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.8165893554688 2 499.815867 997.617182 0.23364 0.00011678 0.74294 0.00037133 0.97658 0.00048811 499.81614031464676 64.893 0.40829 64.409 64.231 64.639 -0.48448 51 18 4 0 0 0 0.10247 1 35356 35356 32.786 1.5173 1 7160200 70559 3555 47183 48207 82081 82081 0.11827790516804271 VLGEKINIL 9 Unmodified _VLGEKINIL_ 0 0 0 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1;ENSG00000120942|ENST00000376810|UBIAD1 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8161926269531 2 499.815867 997.617182 1.1667 0.00058314 0.01837 9.1814E-06 1.1851 0.00059232 499.8157756028897 71.963 0.83148 65.787 65.462 66.293 -6.1757 75 44 2 0 0 0 0.06294 2 47144 46963;47144 41.84 1.7741 1 43949000 70560 3555 47183 48207 82082;82083 82083 0.11827790516804271 VLGERIVIV 9 Unmodified _VLGERIVIV_ 0 0 0 ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 ENSG00000175946|ENST00000684634|KLHL38 MSMS AL20221201_MKP_PDAC_01 4 499.3250122070312 2 499.32386 996.633166 NaN NaN NaN NaN NaN NaN NaN 73.678 1 67.502 67.002 68.002 -6.1757 0 0 0 0.22437 1 48176 48176 29.082 2.1979 1 70561 8553 47184 48208 82084 82084 0.1347149675370929 VLGEYVEGF 9 Unmodified _VLGEYVEGF_ 0 0 0 REV__ENST00000563518.5_1_15:41796702-41799561:-|nuORF REV__ENST00000563518.5_1_15:41796702-41799561:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7530517578125 2 506.752933 1011.49131 0.4212 0.00021345 0.76278 0.00038654 1.184 0.00059999 506.7532122243004 94.359 0.38132 94.359 94.178 94.56 0 74 32 3 0 0 0 0.53666 1 52108 52108 5.2307 0.47466 1 1313200 + 70562 17340 47185 48209 82085 82085 -0.01397341059282553 VLGGFIFE 8 Unmodified _VLGGFIFE_ 0 0 0 REV__nc|ENSG00000172005|P21145-2|MAL REV__nc|ENSG00000172005|P21145-2|MAL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2405395507812 2 441.242004 880.469455 NaN NaN NaN NaN NaN NaN NaN 67.921 1 67.921 67.421 68.421 0 0 0 0 0.97444 1 37871 37871 2.5775 0 1 + 70563 22620 47186 48210 82086 82086 0.02443898982801329 VLGGKAFLEHL 11 Unmodified _VLGGKAFLEHL_ 0 0 0 ENSG00000101624|ENST00000262127|CEP76;ENST00000590143.5_1_18:12662154-12700964:-|nuORF ENSG00000101624|ENST00000262127|CEP76 ENSG00000101624|ENST00000262127|CEP76 MSMS AL20221201_MKP_PDAC_01 4 395.2333374023438 3 395.232641 1182.67609 NaN NaN NaN NaN NaN NaN NaN 88.75 1 82.574 82.074 83.074 -6.1757 0 0 0 0.37447 1 58562 58562 29.281 17.763 1 70564 1982 47187 48211 82087 82087 0.09206266811111163 VLGGKDKAH 9 Unmodified _VLGGKDKAH_ 0 0 0 REV__ENSG00000173273|ENST00000310430|TNKS REV__ENSG00000173273|ENST00000310430|TNKS MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7671813964844 2 462.766709 923.518865 0.93732 0.00043376 -0.26241 -0.00012143 0.67491 0.00031233 462.76659880295955 38.143 0.53876 33.774 33.473 34.012 -4.3689 83 32 3 0 0 0 0.20428 1 22586 22586 22.736 0.078198 1 143620000 + 70565 22718 47188 48212 82088 82088 0.05404606991601213 VLGHFILLF 9 Unmodified _VLGHFILLF_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF ENSG00000198959|ENST00000361475|TGM2 ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8255615234375 2 529.823495 1057.63244 4.3293 0.0022937 -0.73049 -0.00038703 3.5988 0.0019067 529.8230969565634 99.121 0.27258 99.093 98.891 99.164 -0.028282 24 9 3 0 0 0 0.10734 1 55005 55005 45.75 9.2838 1 9136800 70566 10212 47189 48213 82089 82089 0.10592702104645468 VLGLPLWWK 9 Unmodified _VLGLPLWWK_ 0 0 0 nc|ENSG00000087111|Q96S52-2|PIGS;ENSG00000087111|ENST00000308360|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;ENST00000577594.5_1_17:26890803-26898514:-|nuORF nc|ENSG00000087111|Q96S52-2|PIGS nc|ENSG00000087111|Q96S52-2|PIGS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.2277526855469 3 371.226939 1110.65899 NaN NaN NaN NaN NaN NaN NaN 80.311 1 80.311 79.811 80.811 0 0 0 0 0.86031 1 44594 44594 0.23584 0 1 70567 1454 47190 48214 82090 82090 0.1080839099597597 VLGLVKVKKKL 11 Unmodified _VLGLVKVKKKL_ 0 0 0 ENSG00000165323|ENST00000525166|FAT3;nc|ENSG00000165323|Q8TDW7|FAT3 ENSG00000165323|ENST00000525166|FAT3 ENSG00000165323|ENST00000525166|FAT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.9402465820312 2 612.941934 1223.86931 NaN NaN NaN NaN NaN NaN NaN 20.953 1 20.953 20.453 21.453 0 0 0 0 0.9435 1 10569 10569 0 0 1 70568 7326 47191 48215 82091 82091 0.26633428598165665 VLGLYGLIV 9 Unmodified _VLGLYGLIV_ 0 0 0 ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C ENSG00000185883|ENST00000330398|ATP6V0C MULTI-MSMS AL20221201_MKP_PDAC_01 4 947.5513916015625 1 946.597181 945.589904 0.88241 0.00083529 0.81396 0.00077049 1.6964 0.0016058 946.5978192865041 101.03 0.10926 94.852 94.798 94.907 -6.1757 9 5 2 0 0 0 0.1492 1 67687 67687 28.173 0 1 17798000 70569 9423 47192 48216 82092 82092 0.1149330697643336 VLGNFVSLSF 10 Unmodified _VLGNFVSLSF_ 0 0 0 REV__ENSG00000124743|ENST00000370905|KLHL31 REV__ENSG00000124743|ENST00000370905|KLHL31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.7968139648438 2 541.797675 1081.5808 0.27071 0.00014667 0.44331 0.00024018 0.71402 0.00038686 541.7976392419486 67.619 0.41821 67.637 67.474 67.893 0.018028 45 20 3 0 0 0 0.17714 1 37104 37104 36.506 7.4246 1 9114200 + 70570 19466 47193 48217 82093 82093 0.04326913620070627 VLGPLTSVRF 10 Unmodified _VLGPLTSVRF_ 0 0 0 ENST00000397728.7_1_21:47609133-47609427:-|nuORF ENST00000397728.7_1_21:47609133-47609427:-|nuORF ENST00000397728.7_1_21:47609133-47609427:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.82763671875 2 544.826766 1087.63898 NaN NaN NaN NaN NaN NaN NaN 67.044 1 67.062 66.562 67.562 0.018028 0 0 0 0.71851 1 36797 36797 15.847 1.0089 1 70571 12831 47194 48218 82094 82094 0.09866595265361866 VLGRFTGP 8 Unmodified _VLGRFTGP_ 0 0 0 REV__ENSG00000185924|ENST00000331238|RTN4RL1 REV__ENSG00000185924|ENST00000331238|RTN4RL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.7449035644531 2 423.745245 845.475937 0.1418 6.0087E-05 -0.42739 -0.0001811 -0.28559 -0.00012102 423.7450695264435 42.982 0.2529 42.671 42.524 42.777 -0.31039 18 11 2 0 0 0 0.66338 1 22855 22855 20.454 2.3186 1 8494700 + 70572 23535 47195 48219 82095 82095 0.04701836934179937 VLGSVERL 8 Unmodified _VLGSVERL_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.763427734375 2 436.763635 871.512717 -0.67271 -0.00029381 0.0032626 1.425E-06 -0.66944 -0.00029239 436.76358690007345 30.411 0.32322 30.411 30.263 30.587 0 46 15 4 0 0 0 0.21098 1 15758 15758 68.081 6.7232 1 53436000 70573 5500 47196 48220 82096 82096 0.071820887600893 VLGSVERL 8 Unmodified _VLGSVERL_ 0 0 0 nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 nc|ENSG00000143374|Q9BW92-2|TARS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 436.763635 871.512717 0.1516 6.6212E-05 0.66966 0.00029248 0.82125 0.00035869 436.76415539112975 30.148 0.1644 30.178 30.091 30.255 0.030104 -0.12921 0.00069035 NaN 68.081 12 6 2 NaN NaN NaN NaN 0 NaN NaN 0 531770 70574 5500 47196 48220 0.071820887600893 VLGTKSVASL 10 Unmodified _VLGTKSVASL_ 0 0 0 ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7975158691406 2 487.797675 973.580796 NaN NaN NaN NaN NaN NaN NaN 69.982 1 69.982 69.482 70.482 0 0 0 0 0.48706 1 38990 38990 26.884 0 1 70575 14343 47197 48221 82097 82097 0.0929491362007866 VLGTKSVASL 10 Unmodified _VLGTKSVASL_ 0 0 0 ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF ENST00000494986.5_1_2:74682243-74683007:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.29931640625 2 487.797675 973.580796 0.37718 0.00018399 -1.9113 -0.00093232 -1.5341 -0.00074834 487.79646162653074 70.502 0.088776 70.024 69.984 70.073 -0.47736 14 12 2 0 0 0 0.31022 1 38575 38575 26.884 0 1 2697700 70576 14343 47197 48221 82098 82098 0.0929491362007866 VLHDGKCMSE 10 Unmodified _VLHDGKCMSE_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1;nc|ENSG00000138759|Q86XX4-4|FRAS1;nc|ENSG00000138759|Q86XX4-6|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8155517578125 2 559.752084 1117.48961 0.69374 0.00038832 -0.32616 -0.00018257 0.36758 0.00020575 559.7517623357523 84.881 0.18285 84.379 84.3 84.483 -0.5015 10 7 2 0 0 0 0.23862 1 46485 46485 3.9444 0 1 225020 70577 5100 47198 48222 82099 82099 -0.06443041411193917 VLHEGTNFV 9 Unmodified _VLHEGTNFV_ 0 0 0 nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK nc|ENSG00000166333|Q13418-3|ILK nc|ENSG00000166333|Q13418-3|ILK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2644958496094 2 508.263999 1014.51345 0.33964 0.00017263 -2.3283 -0.0011834 -1.9887 -0.0010108 508.2635461460259 37.326 0.15078 37.326 37.238 37.389 0 12 7 2 0 0 0 0.070838 1 19855 19855 39.957 3.8303 1 2465300 70578 7471 47199 48223 82100 82100 0.006768834091417375 VLHELTFQA 9 Unmodified _VLHELTFQA_ 0 0 0 ENSG00000116266|ENST00000370008|STXBP3;ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1 ENSG00000116266|ENST00000370008|STXBP3;ENSG00000136854|ENST00000373299|STXBP1 ENSG00000136854|ENST00000373299|STXBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.2683715820312 2 529.287474 1056.5604 0.51926 0.00027484 2.2933 0.0012138 2.8126 0.0014887 529.2888057921507 50.798 0.18069 50.384 50.298 50.479 -0.41351 13 8 2 0 0 0 0.1474 1 27374 27374 28.487 11.545 1 1422000 70579 3211;4868 47200 48224 82101 82101 0.034377429602727716 VLHHIRYRNWR 11 Unmodified _VLHHIRYRNWR_ 0 0 0 ENSG00000158258|ENST00000458420|CLSTN2 ENSG00000158258|ENST00000458420|CLSTN2 ENSG00000158258|ENST00000458420|CLSTN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.29248046875 3 517.291887 1548.85383 0.52176 0.0002699 0.8392 0.00043411 1.361 0.00070401 517.291838223409 40.488 0.1694 40.494 40.424 40.593 0.0050583 17 7 3 0 0 0 0.74429 1 21591 21591 0.094841 0 1 2171800 70580 6574 47201 48225 82102 82102 0.10135954853694784 VLHIPCPA 8 Unmodified _VLHIPCPA_ 0 0 0 ENST00000485071.2_1_7:100172857-100173304:-|nuORF ENST00000485071.2_1_7:100172857-100173304:-|nuORF ENST00000485071.2_1_7:100172857-100173304:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 849.4627685546875 1 849.465121 848.457844 0.70521 0.00059905 -4.1571 -0.0035313 -3.4519 -0.0029323 849.461735177598 101.52 0.086327 95.345 95.309 95.395 -6.1757 5 3 2 0 0 0 0.5245 1 68140 68140 32.454 0 1 3726100 70581 14163 47202 48226 82103 82103 0.027553786878115716 VLHLLLSHL 9 Unmodified _VLHLLLSHL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MSMS AL20221201_MKP_PDAC_01 4 522.83251953125 2 522.831852 1043.64915 NaN NaN NaN NaN NaN NaN NaN 92.755 1 86.579 86.079 87.079 -6.1757 0 0 0 0.15618 1 61349 61349 36.044 0 1 70582 3829;16172 47203 48227 82104 82104 0.12907202990618316 VLHPRHYTF 9 Unmodified _VLHPRHYTF_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5451965332031 3 390.545331 1168.61416 0.1014 3.9599E-05 0.16666 6.509E-05 0.26806 0.00010469 390.5455280263582 24.645 0.19839 24.67 24.533 24.732 0.024427 10 7 2 0 0 0 0.07916 1 12733 12733 28.495 18.951 1 3834900 70583 8116 47204 48228 82105 82105 0.03659960182631039 VLHPVMPES 9 Unmodified _VLHPVMPES_ 0 0 0 REV__ENST00000491898.5_1_6:43023457-43023601:-|nuORF REV__ENST00000491898.5_1_6:43023457-43023601:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.2826538085938 2 504.762778 1007.511 0.72676 0.00036684 -3.7928 -0.0019145 -3.0661 -0.0015476 504.76156346901485 45.889 0.27528 40.934 40.774 41.049 -4.9549 23 17 2 0 0 0 0.17666 1 28258 28258 8.5933 0 1 4755900 + 70584 27896 47205 48229 82106 82106 0.007547116798264142 VLHQDSFY 8 Unmodified _VLHQDSFY_ 0 0 0 REV__nc|ENSG00000240268|A6NHM9|MOXD2P REV__nc|ENSG00000240268|A6NHM9|MOXD2P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7421875 2 504.742899 1007.47125 NaN NaN NaN NaN NaN NaN NaN 70.429 1 69.951 69.451 70.451 -0.47855 0 0 0 0.9706 1 38520 38520 6.3541 0.59368 1 + 70585 29964 47206 48230 82107 82107 -0.03219091999244483 VLHRNLIYL 9 Unmodified _VLHRNLIYL_ 0 0 0 ENST00000474941.1_1_3:42633004-42635998:+|nuORF;ENSG00000008324|ENST00000011691|SS18L2 ENST00000474941.1_1_3:42633004-42635998:+|nuORF ENST00000474941.1_1_3:42633004-42635998:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.9025268554688 3 380.901114 1139.68151 0.24081 9.1726E-05 0.97927 0.000373 1.2201 0.00046473 380.9019218935981 48.799 0.23766 48.755 48.609 48.847 -0.04369 14 11 2 0 0 0 0.30562 1 26337 26337 11.495 5.3029 1 2115500 70586 387 47207 48231 82108 82108 0.11725990393620123 VLHRWWMG 8 Unmodified _VLHRWWMG_ 0 0 0 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 REV__nc|ENSG00000148339|Q6KCM7-6|SLC25A25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.5282592773438 2 542.779096 1083.54364 NaN NaN NaN NaN NaN NaN NaN 0.12647 1 0.1044 -0.3956 0.6044 -0.022065 0 0 0 0.97444 1 68 68 0 0 1 + 70587 20941 47208 48232 82109 82109 0.0052096359331699205 VLHSLLWEV 9 Unmodified _VLHSLLWEV_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MSMS AL20221201_MKP_PDAC_01 4 548.315185546875 2 548.313492 1094.61243 NaN NaN NaN NaN NaN NaN NaN 97.136 1 90.96 90.46 91.46 -6.1757 0 0 0 0.080768 1 64378 64378 48.346 19.859 1 70588 1153 47209 48233 82110 82110 0.0689090637404206 VLIDFVANL 9 Unmodified _VLIDFVANL_ 0 0 0 REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4 REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.293212890625 2 502.294768 1002.57498 NaN NaN NaN NaN NaN NaN NaN 87.868 1 87.363 86.863 87.863 -0.50423 0 0 0 0.43483 1 48061 48061 18.146 3.3081 1 + 70589 19482 47210 48234 82111 82111 0.07379815108413368 VLIDLAHVSV 10 Unmodified _VLIDLAHVSV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1;ENST00000564281.5_1_16:89680092-89704100:+|nuORF ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3189697265625 2 533.318774 1064.623 0.65475 0.00034919 0.27038 0.0001442 0.92513 0.00049339 533.3188589886234 74.146 0.28987 73.67 73.527 73.817 -0.47588 28 11 3 0 0 0 0.28721 1 40562 40562 39.95 10.868 1 1679600 70590 494 47211 48235 82112 82112 0.09326889028443475 VLIDLAHVSV 10 Unmodified _VLIDLAHVSV_ 0 0 0 ENSG00000015413|ENST00000690203|DPEP1;ENST00000564281.5_1_16:89680092-89704100:+|nuORF ENSG00000015413|ENST00000690203|DPEP1 ENSG00000015413|ENST00000690203|DPEP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.318774 1064.623 0.29159 0.00015551 -0.063667 -3.3955E-05 0.22792 0.00012155 533.3183256566308 73.658 0.12698 73.702 73.654 73.781 0.043983 0.016354 -0.00031587 NaN 39.95 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1371400 70591 494 47211 48235 0.09326889028443475 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.3118896484375 2 560.31148 1118.60841 0.80776 0.0004526 0.026133 1.4643E-05 0.83389 0.00046724 560.3114670538331 42.482 0.44273 42.482 42.143 42.586 0 51 21 3 0 0 0 0.0082485 1 23000 23000 96.285 47.939 1 22976000 70592 1354;13208 47212 48236 82113 82113 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3126831054688 2 560.31148 1118.60841 0.29615 0.00016594 0.092441 5.1796E-05 0.38859 0.00021773 560.3115545606917 42.718 0.29105 42.409 42.256 42.547 -0.30904 35 12 4 0 0 0 0.0082485 2 22663 22663;22765 96.285 40.108 1 45931000 70593 1354;13208 47212 48236 82114;82115 82114 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3118286132812 2 560.31148 1118.60841 0.68768 0.00038531 -0.42638 -0.0002389 0.2613 0.00014641 560.3111566399195 42.427 0.14924 42.418 42.318 42.467 -0.0088196 10 6 2 0 0 0 0.094149 1 22732 22732 34.402 8.1336 1 3488500 70594 1354;13208 47212 48236 82116 82116 0.05384816880314247 VLIDYQRNV 9 Unmodified _VLIDYQRNV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.311279296875 2 560.31148 1118.60841 1.2288 0.00068851 -0.26731 -0.00014978 0.96148 0.00053873 560.3113306470898 48.445 0.44604 43.211 43.018 43.464 -5.2339 83 26 4 0 0 0 0.0074135 2 30090 30090;30226 110.67 35.746 1 193910000 70595 1354;13208 47212 48236 82117;82118 82117 0.05384816880314247 VLIEKSHEM 9 Unmodified _VLIEKSHEM_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.5271301269531 3 362.526837 1084.55868 1.0606 0.00038451 0.42481 0.000154 1.4855 0.00053852 362.52703584518633 26.432 0.27847 23.481 23.34 23.619 -2.9511 22 14 2 0 0 0 0.07087 1 14568 14568 37.075 23.46 1 7664900 70596 4978 47213 48237 82119 82119 0.019783658800179182 VLIEKSHEM 9 Unmodified _VLIEKSHEM_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MSMS AL20221201_MKP_PDAC_01 4 543.2869262695312 2 543.286617 1084.55868 NaN NaN NaN NaN NaN NaN NaN 26.5 1 23.549 23.049 24.049 -2.9511 0 0 0 0.15231 1 14612 14612 36.506 4.2007 1 70597 4978 47213 48237 82120 82120 0.019783658800179182 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2845458984375 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 73.328 1 73.328 72.828 73.828 0 0 0 0 0.6306 1 40820 40820 11.64 0.81637 1 70598 8569 47214 48238 82121 82121 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2856140136719 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 75.819 1 75.819 75.319 76.319 0 0 0 0 0.76439 1 42167 42167 7.2892 0.56607 1 70599 8569 47214 48238 82122 82122 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2833557128906 2 479.2844 956.554247 0.81896 0.00039252 -0.29832 -0.00014298 0.52065 0.00024954 479.28417265903977 73.969 0.52387 73.493 73.43 73.954 -0.47588 34 22 2 0 0 0 0.41742 1 40497 40497 11.64 0.81637 1 698370 70600 8569 47214 48238 82123 82123 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2845458984375 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 74.589 1 74.113 73.613 74.613 -0.47588 0 0 0 0.6306 1 40824 40824 11.64 2.2929 1 70601 8569 47214 48238 82124 82124 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2813415527344 2 479.2844 956.554247 0.38099 0.0001826 -0.58896 -0.00028228 -0.20797 -9.9679E-05 479.283997422818 70.046 1.5932 70.077 69.806 71.399 0.030914 178 75 5 0 0 0 0.042911 6 38420 38420;38533;38638;38742;38773;38847 48.346 24.325 1 339710000 70602 8569 47214 48238 82125;82126;82127;82128;82129;82130 82125 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.5618896484375 1 957.561524 956.554247 0.23665 0.00022661 -0.15697 -0.00015031 0.07968 7.6299E-05 957.5612870597183 78.404 1.5672 72.228 71.668 73.235 -6.1757 283 91 4 0 0 0 0.0082485 4 51616 50985;51354;51616;51744 96.285 15.687 1 1155700000 70603 8569 47214 48238 82131;82132;82133;82134 82133 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 479.2845458984375 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 80.493 1 74.317 73.817 74.817 -6.1757 0 0 0 0.17247 1 52812 52812 34.102 12.356 1 70604 8569 47214 48238 82135 82135 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 479.2842712402344 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 81.271 1 75.095 74.595 75.595 -6.1757 0 0 0 0.098163 1 53338 53338 43.858 13.222 1 70605 8569 47214 48238 82136 82136 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 479.2842102050781 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 81.54 1 75.364 74.864 75.864 -6.1757 0 0 0 0.065563 1 53525 53525 52.268 25.385 1 70606 8569 47214 48238 82137 82137 0.0742322472875685 VLIENVASL 9 Unmodified _VLIENVASL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MSMS AL20221201_MKP_PDAC_01 4 479.2850646972656 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 81.732 1 75.556 75.056 76.056 -6.1757 0 0 0 0.04157 1 53661 53661 61.357 19.263 1 70607 8569 47214 48238 82138 82138 0.0742322472875685 VLIEPVQI 8 Unmodified _VLIEPVQI_ 0 0 0 REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3;REV__ENSG00000095951|ENST00000379388|HIVEP1 REV__ENSG00000095951|ENST00000379388|HIVEP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.7825012207031 2 455.784036 909.553519 -0.31455 -0.00014337 -3.2634 -0.0014874 -3.578 -0.0016308 455.7828564010449 102.69 0.14572 102.64 102.58 102.72 -0.04792 5 4 2 0 0 0 8.7369 1 57054 57054 0.69038 0 1 1080100 + 70608 17953;19572 47215 48239 82139 82139 0.09512430079701062 VLIETLVTL 9 Unmodified _VLIETLVTL_ 0 0 0 nc|ENSG00000101444|P23526-2|AHCY;ENSG00000101444|ENST00000217426|AHCY;ENST00000480653.5_1_20:32878355-32891076:-|nuORF;ENST00000606061.1_1_20:32881868-32891076:-|nuORF nc|ENSG00000101444|P23526-2|AHCY nc|ENSG00000101444|P23526-2|AHCY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.8180541992188 2 500.818076 999.621598 0.11093 5.5558E-05 0.53092 0.00026589 0.64185 0.00032145 500.8182420702659 97.075 0.24397 96.832 96.685 96.929 -0.24277 18 10 2 0 0 0 0.39863 1 53030 53030 12.532 3.9383 1 490220 70609 1967 47216 48240 82140 82140 0.12177254939717841 VLIFDDSF 8 Unmodified _VLIFDDSF_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.241455078125 2 478.242201 954.469849 0.45553 0.00021785 -0.66464 -0.00031786 -0.20911 -0.0001 478.24180256584145 70.775 0.21989 70.297 70.148 70.368 -0.47735 15 11 2 0 0 0 0.71616 1 38733 38733 15.768 1.1865 1 869460 70610 10082 47217 48241 82141 82141 -0.009207260879975365 VLIFDTITL 9 Unmodified _VLIFDTITL_ 0 0 0 REV__ENSG00000115592|ENST00000439262|PRKAG3 REV__ENSG00000115592|ENST00000439262|PRKAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8111572265625 2 517.810251 1033.60595 1.3877 0.00071857 -0.79779 -0.0004131 0.58993 0.00030547 517.8093594223785 101.04 0.12459 94.864 94.815 94.939 -6.1757 9 6 2 0 0 0 0.28047 1 67749 67749 18.135 0 1 18416000 + 70611 18994 47218 48242 82142 82142 0.09048968422666803 VLIGRKELF 9 Unmodified _VLIGRKELF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.8375854492188 2 537.837134 1073.65972 0.56375 0.00030321 -0.26601 -0.00014307 0.29774 0.00016014 537.8368489666351 47.605 0.22578 47.566 47.435 47.661 -0.038647 27 10 3 0 0 0 0.0094802 1 25628 25628 70.332 14.155 1 9610500 70612 1381 47219 48243 82143 82143 0.12583185645030426 VLIGRKELF 9 Unmodified _VLIGRKELF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.89453125 3 358.893848 1073.65972 1.4902 0.00053482 0.36497 0.00013098 1.8552 0.00066581 358.8938747081314 53.061 0.35096 47.257 47.05 47.401 -5.8042 38 19 3 0 0 0 0.082934 1 33432 33432 37.075 6.3712 1 38270000 70613 1381 47219 48243 82144 82144 0.12583185645030426 VLIGRKELF 9 Unmodified _VLIGRKELF_ 0 0 0 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 ENSG00000084073|ENST00000372759|ZMPSTE24 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.7615356445312 2 537.837134 1073.65972 0.66234 0.00035623 -0.74457 -0.00040046 -0.082238 -4.4231E-05 537.8370618314772 53.086 0.26096 47.282 47.122 47.383 -5.8042 20 14 2 0 0 0 0.12771 1 33519 33519 34.402 5.3201 1 14164000 70614 1381 47219 48243 82145 82145 0.12583185645030426 VLIHNNLFK 9 Unmodified _VLIHNNLFK_ 0 0 0 REV__ENSG00000136931|ENST00000373588|NR5A1 REV__ENSG00000136931|ENST00000373588|NR5A1 MSMS AL20221201_MKP_PDAC_01 4 366.5526428222656 3 366.553715 1096.63931 NaN NaN NaN NaN NaN NaN NaN 15.109 1 12.582 12.082 13.082 -2.5273 0 0 0 0.77016 1 7725 7725 7.1017 0.90987 1 + 70615 20200 47220 48244 82146 82146 0.09486014985213842 VLIIINVKR 9 Unmodified _VLIIINVKR_ 0 0 0 REV__ENST00000485899.1_1_3:52730485-52734476:-|nuORF REV__ENST00000485899.1_1_3:52730485-52734476:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.3680419921875 2 534.368601 1066.72265 1.5128 0.00080839 -0.61369 -0.00032794 0.89911 0.00048046 534.3681918684593 104.84 0.21587 98.666 98.573 98.789 -6.1757 30 20 2 0 0 0 0.61381 1 70146 70146 0.52476 0 1 13317000 + 70616 17093 47221 48245 82147 82147 0.19195751433085206 VLILHNVR 8 Unmodified _VLILHNVR_ 0 0 0 REV__ENSG00000011198|ENST00000644371|ABHD5 REV__ENSG00000011198|ENST00000644371|ABHD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.3082275390625 2 482.308544 962.602535 0.37445 0.0001806 0.13083 6.3102E-05 0.50529 0.0002437 482.3087076295161 67.654 0.29829 67.673 67.572 67.87 0.018028 22 14 2 0 0 0 0.67481 1 37169 37169 19.439 2.4967 1 4158100 + 70617 17053 47222 48246 82148 82148 0.11973763159312512 VLILLKRSKK 10 Unmodified _VLILLKRSKK_ 0 0 0 REV__ENSG00000132357|ENST00000254691|CARD6 REV__ENSG00000132357|ENST00000254691|CARD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.4229125976562 2 599.423908 1196.83326 NaN NaN NaN NaN NaN NaN NaN 15.202 1 15.208 14.708 15.708 0.0057774 0 0 0 1.0061 1 7567 7567 0 0 1 + 70618 19845 47223 48247 82149 82149 0.24271971421285343 VLILVIIPML 10 Unmodified _VLILVIIPML_ 0 0 0 REV__nc|ENSG00000164031|Q8TBM8-2|DNAJB14 REV__nc|ENSG00000164031|Q8TBM8-2|DNAJB14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.3807373046875 2 562.379789 1122.74502 NaN NaN NaN NaN NaN NaN NaN 75.655 1 75.655 75.155 76.155 0 0 0 0 1.0061 1 42079 42079 0 0 1 + 70619 21851 47224 48248 82150 82150 0.1885621478647863 VLIMEFPDLG 10 Unmodified _VLIMEFPDLG_ 0 0 0 ENST00000484977.1_1_7:1197216-1197866:-|nuORF ENST00000484977.1_1_7:1197216-1197866:-|nuORF ENST00000484977.1_1_7:1197216-1197866:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2994384765625 2 567.299193 1132.58383 0.55489 0.00031479 -2.0234 -0.0011479 -1.4686 -0.00083311 567.2979474225128 94.961 0.33118 94.593 94.423 94.754 -0.36815 34 16 4 0 0 0 0.6606 1 51831 51831 7.2892 0.56607 1 994540 70620 14160 47225 48249 82151 82151 0.02284420682599375 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.8441162109375 2 510.844428 1019.6743 0.64941 0.00033175 -0.0055196 -2.8197E-06 0.64389 0.00032893 510.844387170367 79.026 0.50175 79.081 78.809 79.31 0.05497 71 19 5 0 0 0 0.012148 3 43555 43555;43662;43765 74.423 45.936 1 84832000 70621 8178 47226 48250 82152;82153;82154 82152 0.1652525779318239 VLIPKLPQL 9 Unmodified _VLIPKLPQL_ 0 0 0 nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 nc|ENSG00000172057|Q8N138-4|ORMDL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8447570800781 2 510.844428 1019.6743 1.1741 0.0005998 -0.49286 -0.00025177 0.68127 0.00034802 510.84415549984664 95.624 0.54996 89.448 89.18 89.73 -6.1757 115 33 4 0 0 0 0.012148 3 63246 63246;63372;63499 74.423 45.936 1 550630000 70622 8178 47226 48250 82155;82156;82157 82155 0.1652525779318239 VLIPLIVIPVV 11 Unmodified _VLIPLIVIPVV_ 0 0 0 ENSG00000122679|ENST00000242249|RAMP3 ENSG00000122679|ENST00000242249|RAMP3 ENSG00000122679|ENST00000242249|RAMP3 MSMS AL20221201_MKP_PDAC_01 4 392.2771911621094 3 392.277299 1173.81007 NaN NaN NaN NaN NaN NaN NaN 102.68 1 96.506 96.006 97.006 -6.1757 0 0 0 0.9435 1 68896 68896 0 0 1 70623 3654 47227 48251 82158 82158 0.2301153258395061 VLIQRNPQL 9 Unmodified _VLIQRNPQL_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.830078125 2 540.82984 1079.64513 0.35009 0.00018934 0.060213 3.2565E-05 0.41031 0.00022191 540.8299844812677 39.891 0.21302 39.896 39.791 40.004 0.0050583 15 9 2 0 0 0 0.042911 1 21243 21243 48.346 19.264 1 1808400 70624 5369 47228 48252 82159 82159 0.10849113496897189 VLIQRNPQL 9 Unmodified _VLIQRNPQL_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 540.7776489257812 2 540.82984 1079.64513 0.29661 0.00016042 -0.35112 -0.0001899 -0.054506 -2.9479E-05 540.82974541767 45.419 0.24969 40.464 40.348 40.598 -4.9549 26 16 2 0 0 0 0.1474 1 27854 27854 21.747 4.8044 1 8624700 70625 5369 47228 48252 82160 82160 0.10849113496897189 VLIQRNPQL 9 Unmodified _VLIQRNPQL_ 0 0 0 nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2-PPP1R1B|4|fusion;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-PPP1R1B|3|fusion;nc|ENSG00000141736|P04626-6|ERBB2;ERBB2-PPP1R1B|2|fusion;ERBB2-PPP1R1B|1|fusion nc|ENSG00000141736|P04626-5|ERBB2 nc|ENSG00000141736|P04626-5|ERBB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.82984 1079.64513 0.23267 0.00012583 -0.55691 -0.0003012 -0.32425 -0.00017536 540.8297747161452 40.262 0.1462 39.965 39.862 40.008 -0.29716 0.03449 -0.00030909 NaN 48.346 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 865390 70626 5369 47228 48252 0.10849113496897189 VLIQVFVKQL 10 Unmodified _VLIQVFVKQL_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.2569274902344 3 396.256787 1185.74853 0.14989 5.9393E-05 0.28875 0.00011442 0.43864 0.00017381 396.2567798677197 59.887 0.34364 59.834 59.614 59.958 -0.053062 23 16 2 0 0 0 0.66652 1 32663 32663 6.6304 0 1 3559000 + 70627 21791 47229 48253 82161 82161 0.16308600884713087 VLIRRIHKG 9 Unmodified _VLIRRIHKG_ 0 0 0 ENST00000508980.5_1_6:86270935-86284080:-|nuORF ENST00000508980.5_1_6:86270935-86284080:-|nuORF ENST00000508980.5_1_6:86270935-86284080:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 546.3597412109375 2 546.361642 1090.70873 NaN NaN NaN NaN NaN NaN NaN 105.8 1 99.621 99.121 100.12 -6.1757 0 0 0 0.8622 1 70862 70862 0 0 1 70628 14572 47230 48254 82162 82162 0.16700518724633184 VLISRSKD 8 Unmodified _VLISRSKD_ 0 0 0 ENST00000532178.1_2_11:43775610-43827871:+|nuORF;nc|ENSG00000149084|Q53GQ0-2|HSD17B12;ENSG00000149084|ENST00000278353|HSD17B12 ENST00000532178.1_2_11:43775610-43827871:+|nuORF ENST00000532178.1_2_11:43775610-43827871:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 459.2752685546875 2 459.274367 916.53418 NaN NaN NaN NaN NaN NaN NaN 103.57 1 97.396 96.896 97.896 -6.1757 0 0 0 0.97444 1 69434 69434 2.5775 0 1 70629 5980 47231 48255 82163 82163 0.07257473788808966 VLITGLPLI 9 Unmodified _VLITGLPLI_ 0 0 0 ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2 ENST00000466095.5_1_1:60366713-60392418:-|nuORF ENST00000466095.5_1_1:60366713-60392418:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 938.6301879882812 1 938.628481 937.621205 0.60829 0.00057096 1.1396 0.0010697 1.7479 0.0016406 938.6291194581908 101.5 0.099014 95.32 95.252 95.351 -6.1757 8 4 2 0 0 0 0.0086629 1 68102 68102 101.72 15.601 1 10396000 70630 4633 47232 48256 82164 82164 0.14989880010523393 VLIVGFFSF 9 Unmodified _VLIVGFFSF_ 0 0 0 ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2621459960938 2 514.794404 1027.57425 0.45924 0.00023641 3.8592 0.0019867 4.3185 0.0022231 514.7955055619764 71.666 0.29713 71.19 71.022 71.319 -0.47609 16 11 2 0 0 0 0.19298 1 39198 39198 13.508 1.8676 1 624340 70631 9746 47233 48257 82165 82165 0.061570204593635935 VLIVGFFSF 9 Unmodified _VLIVGFFSF_ 0 0 0 ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 ENSG00000189362|ENST00000409150|NEMP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.794404 1027.57425 1.0374 0.00053403 4.2364 0.0021809 5.2737 0.0027149 514.7962224162378 71.491 0.40472 71.53 71.301 71.706 0.039024 0.16998 0.00016207 NaN 13.508 32 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1761200 70632 9746 47233 48257 0.061570204593635935 VLKERLKLVLD 11 Unmodified _VLKERLKLVLD_ 0 0 0 REV__ENSG00000205593|ENST00000413817|DENND6B REV__ENSG00000205593|ENST00000413817|DENND6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.4310302734375 2 663.429387 1324.84422 1.2205 0.00080973 -0.57722 -0.00038294 0.6433 0.00042679 663.4287898334229 105.69 0.71431 99.513 99.324 100.04 -6.1757 251 80 5 0 0 0 0.74203 3 70750 70750;70757;70962 0.30703 0 1 46970000 + 70633 24231 47234 48258 82166;82167;82168 82166 0.19479329004934698 VLKKKAMLHQ 10 Unmodified _VLKKKAMLHQ_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2505187988281 3 399.249638 1194.72708 NaN NaN NaN NaN NaN NaN NaN 70.599 1 70.122 69.622 70.622 -0.47735 0 0 0 0.98692 1 38625 38625 2.086 0 1 70634 9779 47235 48259 82169 82169 0.13750892584334906 VLKKSYKLKGT 11 Unmodified _VLKKSYKLKGT_ 0 0 0 ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C ENSG00000137766|ENST00000260323|UNC13C MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.9036254882812 2 632.903005 1263.79146 1.4064 0.0008901 -0.56302 -0.00035634 0.84336 0.00053377 632.9027784285514 105.88 1.0046 99.706 99.434 100.44 -6.1757 244 143 3 0 0 0 0.7453 1 71211 71211 0 0 1 12953000 70635 4965 47236 48260 82170 82170 0.17011370942100257 VLKKVEQCVTY 11 Unmodified _VLKKVEQCVTY_ 0 0 0 REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3624267578125 2 655.362856 1308.71116 0.59741 0.00039152 -1.8027 -0.0011814 -1.2053 -0.00078989 655.3617948551695 52.257 0.23652 51.823 51.688 51.925 -0.43367 18 11 2 0 0 0 0.59689 1 28225 28225 11.495 0 1 1810800 + 70636 19070 47237 48261 82171 82171 0.06915141556760318 VLKKVEQCVTY 11 Unmodified _VLKKVEQCVTY_ 0 0 0 REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF REV__ENST00000369426.9_1_1:119575536-119588262:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.3615112304688 2 655.362856 1308.71116 0.6194 0.00040593 -1.5412 -0.0010101 -0.92183 -0.00060413 655.3615647456282 51.919 0.35329 51.86 51.651 52.005 -0.058918 70 16 6 0 0 0 0.53952 2 28078 28078;28182 14.405 2.9107 1 15386000 + 70637 19070 47237 48261 82172;82173 82172 0.06915141556760318 VLKLLLLAL 9 Unmodified _VLKLLLLAL_ 0 0 0 REV__nc|ENSG00000133731|P29218-2|IMPA1 REV__nc|ENSG00000133731|P29218-2|IMPA1 MSMS AL20221201_MKP_PDAC_01 4 498.363525390625 2 498.364996 994.715439 NaN NaN NaN NaN NaN NaN NaN 105.62 1 99.449 98.949 99.949 -6.1757 0 0 0 0.8622 1 70760 70760 0 0 1 + 70638 29635 47238 48262 82174 82174 0.21787018832628746 VLKLMVGGIHV 11 Unmodified _VLKLMVGGIHV_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2413635253906 3 389.242372 1164.70529 0.30538 0.00011887 -0.91112 -0.00035465 -0.60574 -0.00023578 389.241855536821 59.165 0.50397 59.104 58.741 59.245 -0.060719 48 24 3 0 0 0 0.71036 1 32311 32311 1.3296 0 1 3561500 + 70639 17541 47239 48263 82175 82175 0.1295208783576527 VLKLMVGGIHV 11 Unmodified _VLKLMVGGIHV_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2416381835938 3 389.242372 1164.70529 0.19626 7.6394E-05 -1.3856 -0.00053935 -1.1894 -0.00046296 389.2417931173415 59.496 0.26038 59.443 59.293 59.554 -0.053059 21 13 2 0 0 0 0.73115 1 32437 32437 0.45452 0 1 4553200 + 70640 17541 47239 48263 82176 82176 0.1295208783576527 VLKLMVGGIHV 11 Unmodified _VLKLMVGGIHV_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2423400878906 3 389.242372 1164.70529 0.70888 0.00027593 -1.2017 -0.00046774 -0.49278 -0.00019181 389.2418381767662 64.394 0.67136 64.383 64.173 64.844 -0.010529 76 33 3 0 0 0 0.73115 1 35339 35339 0.45452 0 1 11140000 + 70641 17541 47239 48263 82177 82177 0.1295208783576527 VLKNFTQKLL 10 Unmodified _VLKNFTQKLL_ 0 0 0 REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3773803710938 2 602.376623 1202.73869 0.96293 0.00058005 0.12942 7.7958E-05 1.0923 0.000658 602.3765631050113 105.99 0.97316 99.811 99.547 100.52 -6.1757 345 148 3 0 0 0 0.72247 1 71328 71328 0.40072 0 1 11909000 + 70642 28523 47240 48264 82178 82178 0.1454341287931129 VLKNIAARL 9 Unmodified _VLKNIAARL_ 0 0 0 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.3289184570312 2 499.329476 996.6444 NaN NaN NaN NaN NaN NaN NaN 103.55 1 103.44 102.94 103.94 -0.10458 0 0 0 0.8622 1 56482 56482 0 0 1 + 70643 21330 47241 48265 82179 82179 0.14594318847821341 VLKQDKGH 8 Unmodified _VLKQDKGH_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7669067382812 2 462.766709 923.518865 0.93732 0.00043376 -0.26241 -0.00012143 0.67491 0.00031233 462.76659880295955 38.143 0.53876 33.774 33.473 34.012 -4.3689 83 32 3 0 0 0 0.70294 1 22455 22455 16.942 0 1 143620000 70644 6592 47242 48266 82180 82180 0.054046069916125816 VLKRKLFA 8 Unmodified _VLKRKLFA_ 0 0 0 REV__nc|ENSG00000112282|Q9ULK4-4|MED23 REV__nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.7322387695312 1 974.650948 973.643671 1.7631 0.0017184 0.61128 0.00059578 2.3744 0.0023142 974.6516236030969 92.428 0.41025 92.458 92.162 92.573 0.030197 18 15 2 0 0 0 0.80975 1 51252 51252 0.79363 0 1 8728800 + 70645 18802 47243 48267 82181 82181 0.15579524198790295 VLKRLKAKEE 10 Unmodified _VLKRLKAKEE_ 0 0 0 nc|ENSG00000127511|O75182|SIN3B;ENSG00000127511|ENST00000248054|SIN3B nc|ENSG00000127511|O75182|SIN3B nc|ENSG00000127511|O75182|SIN3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2588806152344 3 405.259079 1212.75541 NaN NaN NaN NaN NaN NaN NaN 95.629 1 95.261 94.761 95.761 -0.36814 0 0 0 1.005 1 52231 52231 0.12286 0 1 70646 4014 47244 48268 82182 82182 0.15753913765252037 VLKRRRKW 8 Unmodified _VLKRRRKW_ 0 0 0 REV__ENST00000397130.7_1_15:42840553-42840607:-|nuORF REV__ENST00000397130.7_1_15:42840553-42840607:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 571.37646484375 2 571.375084 1140.73561 NaN NaN NaN NaN NaN NaN NaN 106.62 1 100.45 99.948 100.95 -6.1757 0 0 0 0.97444 1 71363 71363 0.69038 0.28966 1 + 70647 26531 47245 48269 82183 82183 0.17087627335831712 VLKRSPGF 8 Unmodified _VLKRSPGF_ 0 0 0 REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2749328613281 2 452.27417 902.533787 1.2704 0.00057457 0.21804 9.8615E-05 1.4885 0.00067319 452.2742740062288 50.217 0.43215 44.678 44.439 44.872 -5.5391 43 27 2 0 0 0 0.40035 1 31350 31350 44.407 0 1 17724000 + 70648 27620 47246 48270 82184 82184 0.07862098859618527 VLKSLSFLF 9 Unmodified _VLKSLSFLF_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.8651733398438 2 527.320786 1052.62702 1.0692 0.0005638 -0.25643 -0.00013522 0.81275 0.00042858 527.3204296430617 99.395 0.1325 93.219 93.144 93.276 -6.1757 26 8 4 0 0 0 0.14 1 66109 66109 29.082 7.3349 1 240020000 70649 3132 47247 48271 82185 82185 0.10280978522177975 VLKTILLILKG 11 Unmodified _VLKTILLILKG_ 0 0 0 ENSG00000117501|ENST00000367759|MROH9;nc|ENSG00000117501|Q5TGP6|MROH9 ENSG00000117501|ENST00000367759|MROH9 ENSG00000117501|ENST00000367759|MROH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2891540527344 3 404.288087 1209.84243 NaN NaN NaN NaN NaN NaN NaN 102.33 1 102.29 101.79 102.79 -0.045853 0 0 0 0.9435 1 56843 56843 0 0 1 70650 3312 47248 48272 82186 82186 0.24590319986987197 VLKTPLDLVRL 11 Unmodified _VLKTPLDLVRL_ 0 0 0 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20221201_MKP_PDAC_01 4 633.9109497070312 2 633.91083 1265.80711 NaN NaN NaN NaN NaN NaN NaN 104.77 1 98.595 98.095 99.095 -6.1757 0 0 0 0.94184 1 70139 70139 1.1933 0 1 70651 9593 47249 48273 82187 82187 0.18483657459182723 VLKTTTAK 8 Unmodified _VLKTTTAK_ 0 0 0 REV__nc|ENSG00000130816|P26358-3|DNMT1 REV__nc|ENSG00000130816|P26358-3|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.2746276855469 2 431.273835 860.533118 0.39404 0.00016994 0.98573 0.00042512 1.3798 0.00059506 431.2745221149128 39.883 0.27468 35.354 35.155 35.429 -4.5294 23 17 2 0 0 0 0.77186 1 23728 23728 10.824 0 1 11405000 + 70652 19746 47250 48274 82188 82188 0.09727259419901202 VLKVIKFLIII 11 Unmodified _VLKVIKFLIII_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.963134765625 2 649.962335 1297.91012 NaN NaN NaN NaN NaN NaN NaN 17.897 1 17.902 17.402 18.402 0.0050564 0 0 0 0.9435 1 9048 9048 0 0 1 70653 8107 47251 48275 82189 82189 0.27307769917797486 VLKVIKREG 9 Unmodified _VLKVIKREG_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MSMS AL20221201_MKP_PDAC_01 4 521.3419189453125 2 521.342584 1040.67061 NaN NaN NaN NaN NaN NaN NaN 109.43 1 103.25 102.75 103.75 -6.1757 0 0 0 0.85852 1 73082 73082 0.45834 0 1 70654 275 47252 48276 82190 82190 0.15190588019322604 VLKVLKPD 8 Unmodified _VLKVLKPD_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MSMS AL20221201_MKP_PDAC_01 4 456.3010864257812 2 456.299853 910.585153 NaN NaN NaN NaN NaN NaN NaN 104.83 1 98.657 98.157 99.157 -6.1757 0 0 0 0.97444 1 70176 70176 0.69038 0 1 70655 4953 47253 48277 82191 82191 0.12628422833643071 VLKVNQKPIL 10 Unmodified _VLKVNQKPIL_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.58837890625 3 384.588536 1150.74378 0.2799 0.00010764 -0.35826 -0.00013778 -0.078362 -3.0137E-05 384.5883961240733 58.657 0.26934 58.167 57.943 58.212 -0.49079 23 12 3 0 0 0 0.50944 1 31861 31861 13.615 0 1 2473300 + 70656 23990 47254 48278 82192 82192 0.174437167419228 VLKVNQKPIL 10 Unmodified _VLKVNQKPIL_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5887145996094 3 384.588536 1150.74378 0.65994 0.00025381 -0.36052 -0.00013865 0.29942 0.00011515 384.5883608223408 58.234 0.31668 58.174 58.016 58.333 -0.060722 38 15 3 0 0 0 0.39779 1 31698 31698 13.615 1.3873 1 8455100 + 70657 23990 47254 48278 82193 82193 0.174437167419228 VLKVNQKPIL 10 Unmodified _VLKVNQKPIL_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 384.588536 1150.74378 0.2799 0.00010764 -0.35826 -0.00013778 -0.078362 -3.0137E-05 384.5883961240733 58.657 0.26934 58.167 57.943 58.212 -0.49079 -0.0035846 1.4003E-06 NaN 13.615 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2473300 + 70658 23990 47254 48278 0.174437167419228 VLKVNQKPIL 10 Unmodified _VLKVNQKPIL_ 0 0 0 REV__ENSG00000198108|ENST00000305031|CHSY3 REV__ENSG00000198108|ENST00000305031|CHSY3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 384.588536 1150.74378 0.65994 0.00025381 -0.36052 -0.00013865 0.29942 0.00011515 384.5883608223408 58.234 0.31668 58.174 58.016 58.333 -0.060722 0.0035846 -1.2142E-06 NaN 13.615 38 15 3 NaN NaN NaN NaN 0 NaN NaN 0 8455100 + 70659 23990 47254 48278 0.174437167419228 VLKYEPFL 8 Unmodified _VLKYEPFL_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.792236328125 2 504.791861 1007.56917 1.1343 0.00057258 -2.7319 -0.001379 -1.5976 -0.00080644 504.7898403716904 100.75 0.11942 94.577 94.503 94.623 -6.1757 12 8 2 0 0 0 0.64035 1 67480 67480 22.453 1.5814 1 28386000 70660 733 47255 48279 82194 82194 0.06568716596746071 VLLAVLSKIK 10 Unmodified _VLLAVLSKIK_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;REV__ENSG00000173473|ENST00000254480|SMARCC1 REV__ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1085.082885742188 1 1083.74999 1082.74272 0.65789 0.00071299 -0.44665 -0.00048405 0.21124 0.00022894 1084.7511647798187 43.703 0.080463 43.688 43.657 43.737 -0.015667 5 3 2 0 0 0 0.72607 1 23455 23455 0 0 1 9539700 + 70661 22732;20417 47256 48280 82195 82195 0.20465502373008349 VLLAVLSKIK 10 Unmodified _VLLAVLSKIK_ 0 0 0 REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;REV__ENSG00000173473|ENST00000254480|SMARCC1 REV__ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1083.74999 1082.74272 0.65789 0.00071299 -0.44665 -0.00048405 0.21124 0.00022894 1084.7511647798187 43.703 0.080463 43.688 43.657 43.737 -0.015667 0 0 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9539700 + 70662 22732;20417 47256 48280 0.20465502373008349 VLLDAPIQL 9 Unmodified _VLLDAPIQL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 981.5971069335938 1 981.597909 980.590633 0.36904 0.00036225 -0.99451 -0.00097621 -0.62547 -0.00061396 981.5972813734111 87.897 0.24992 87.393 87.286 87.536 -0.50423 20 11 2 0 0 0 0.095405 1 48055 48055 34.102 0 1 1080000 70663 6787 47257 48281 82196 82196 0.09956101625471092 VLLDAPIQL 9 Unmodified _VLLDAPIQL_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000485921.5_1_3:183903968-183904686:+|nuORF;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.3037719726562 2 491.302593 980.590633 1.2165 0.00059766 0.20664 0.00010152 1.4231 0.00069918 491.30253475529867 97.933 0.61894 91.757 91.349 91.968 -6.1757 68 39 3 0 0 0 0.012148 2 64939 64809;64939 74.423 10.186 1 24302000 70664 6787 47257 48281 82197;82198 82198 0.09956101625471092 VLLDNLPGV 9 Unmodified _VLLDNLPGV_ 0 0 0 ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU ENST00000503952.5_1_4:128606686-128637588:+|nuORF ENST00000503952.5_1_4:128606686-128637588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2799682617188 2 470.279118 938.543683 0.27644 0.00013 -0.16262 -7.6479E-05 0.11381 5.3524E-05 470.27855605098614 69.995 0.69901 69.995 69.797 70.496 0 147 64 3 0 0 0 0.022193 1 38935 38935 61.357 7.7819 1 83078000 70665 7129 47258 48282 82199 82199 0.07195242074340058 VLLDNLPGV 9 Unmodified _VLLDNLPGV_ 0 0 0 ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU ENST00000503952.5_1_4:128606686-128637588:+|nuORF ENST00000503952.5_1_4:128606686-128637588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2786865234375 2 470.279118 938.543683 0.26092 0.0001227 -0.17585 -8.2699E-05 0.085068 4.0006E-05 470.2786129080309 70.485 0.72757 70.008 69.798 70.526 -0.47736 128 50 3 0 0 0 0.03568 1 38594 38594 52.268 5.3475 1 101710000 70666 7129 47258 48282 82200 82200 0.07195242074340058 VLLDNLPGV 9 Unmodified _VLLDNLPGV_ 0 0 0 ENST00000503952.5_1_4:128606686-128637588:+|nuORF;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU ENST00000503952.5_1_4:128606686-128637588:+|nuORF ENST00000503952.5_1_4:128606686-128637588:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2793884277344 2 470.279118 938.543683 0.30672 0.00014424 0.80577 0.00037893 1.1125 0.00052318 470.2791491885973 78.36 1.3542 72.185 71.702 73.056 -6.1757 187 79 4 0 0 0 0.011968 1 51681 51681 74.929 14.539 1 353150000 70667 7129 47258 48282 82201 82201 0.07195242074340058 VLLDQVEGL 9 Unmodified _VLLDQVEGL_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.282470703125 2 493.281857 984.549162 0.91108 0.00044942 0.26374 0.0001301 1.1748 0.00057952 493.2820778114212 74.779 0.33386 74.303 74.042 74.376 -0.47588 32 13 3 0 0 0 0.14602 1 40887 40887 28.487 6.9499 1 1219900 + 70668 17583 47259 48283 82202 82202 0.056269208661547054 VLLDQVEGL 9 Unmodified _VLLDQVEGL_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.281857 984.549162 0.42493 0.00020961 0.042036 2.0736E-05 0.46696 0.00023034 493.2818744874711 74.282 0.26741 74.282 74.121 74.388 0 -0.010881 -0.00011771 NaN 28.487 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1147500 + 70669 17583 47259 48283 0.056269208661547054 VLLDQVEGL 9 Unmodified _VLLDQVEGL_ 0 0 0 REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 493.281857 984.549162 0.91108 0.00044942 0.26374 0.0001301 1.1748 0.00057952 493.2820778114212 74.779 0.33386 74.303 74.042 74.376 -0.47588 0.010881 0.00010102 NaN 28.487 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1219900 + 70670 17583 47259 48283 0.056269208661547054 VLLDSVEKL 9 Unmodified _VLLDSVEKL_ 0 0 0 nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 nc|ENSG00000156931|Q8N3P4-2|VPS8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.3060607910156 2 508.305332 1014.59611 NaN NaN NaN NaN NaN NaN NaN 58.684 1 58.684 58.184 59.184 0 0 0 0 0.43483 1 32678 32678 18.146 1.0598 1 70671 6489 47260 48284 82203 82203 0.08939780417290422 VLLDYHLNYL 10 Unmodified _VLLDYHLNYL_ 0 0 0 nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.8394775390625 2 631.842613 1261.67067 0.16984 0.00010731 -2.8672 -0.0018116 -2.6974 -0.0017043 632.3419784920133 76.783 0.21267 76.833 76.698 76.91 0.05011 20 8 3 0 0 0 0.012821 1 42365 42365 82.529 38.757 1 4114800 70672 16093 47261 48285 82204 82204 0.05030543228667739 VLLDYHLNYL 10 Unmodified _VLLDYHLNYL_ 0 0 0 nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1;nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.8433227539062 2 631.842613 1261.67067 0.58338 0.00036861 -0.57622 -0.00036408 0.0071634 4.5261E-06 631.8423182645449 92.626 0.44153 86.451 86.185 86.626 -6.1757 46 26 2 0 0 0 0.00089066 2 61280 61139;61280 114.2 68.502 1 24057000 70673 16093 47261 48285 82205;82206 82206 0.05030543228667739 VLLEHLEK 8 Unmodified _VLLEHLEK_ 0 0 0 REV__nc|ENSG00000215695|Q92681|RSC1A1 REV__nc|ENSG00000215695|Q92681|RSC1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.793212890625 2 490.792392 979.570232 0.46755 0.00022947 -0.49776 -0.0002443 -0.030205 -1.4825E-05 490.79214447833186 65.186 0.19521 64.702 64.575 64.77 -0.48428 10 8 2 0 0 0 0.79669 1 35585 35585 8.5933 0 1 704610 + 70674 29943 47262 48286 82207 82207 0.07962930965663872 VLLEKHRK 8 Unmodified _VLLEKHRK_ 0 0 0 ENSG00000187231|ENST00000428443|SESTD1 ENSG00000187231|ENST00000428443|SESTD1 ENSG00000187231|ENST00000428443|SESTD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7442932128906 2 511.827101 1021.63965 0.070558 3.6113E-05 -0.03896 -1.9941E-05 0.031598 1.6173E-05 511.82753011765374 53.798 0.22894 53.731 53.672 53.901 -0.066936 13 11 2 0 0 0 8.7369 1 29168 29168 5.7604 0 1 1578100 70675 9545 47263 48287 82208 82208 0.12969434705087224 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2947387695312 2 539.294965 1076.57538 0.24502 0.00013214 -0.31784 -0.00017141 -0.072816 -3.927E-05 539.294541256359 76.83 0.31696 76.83 76.637 76.954 0 31 15 3 0 0 0 0.023164 1 42718 42718 60.39 15.983 1 2128100 70676 5221 47264 48288 82209 82209 0.04015190037625871 VLLESEQFL 9 Unmodified _VLLESEQFL_ 0 0 0 ENSG00000140319|ENST00000267884|SRP14;ENST00000558243.1_1_15:40330963-40331317:-|nuORF;ENST00000558527.5_1_15:40329525-40331317:-|nuORF ENSG00000140319|ENST00000267884|SRP14 ENSG00000140319|ENST00000267884|SRP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2963256835938 2 539.294965 1076.57538 -0.6523 -0.00035178 0.59414 0.00032042 -0.058154 -3.1362E-05 539.2955110513991 77.354 0.31129 76.872 76.624 76.935 -0.4826 25 13 3 0 0 0 0.25297 1 42320 42320 19.439 2.4967 1 1465100 70677 5221 47264 48288 82210 82210 0.04015190037625871 VLLESKILL 9 Unmodified _VLLESKILL_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3407592773438 2 514.341718 1026.66888 0.52306 0.00026903 -1.2858 -0.00066135 -0.76276 -0.00039232 514.3409702405123 72.074 0.30051 72.113 71.994 72.295 0.039032 20 14 2 0 0 0 0.044011 1 39692 39692 47.749 7.7914 1 4480500 70678 4903 47265 48289 82211 82211 0.15661534210721584 VLLFMFGKALI 11 Unmodified _VLLFMFGKALI_ 0 0 0 REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.9222106933594 3 417.922639 1250.74609 0.33749 0.00014104 0.21954 9.1751E-05 0.55703 0.00023279 417.9224329234427 99.755 0.17274 99.598 99.496 99.669 -0.1575 11 5 3 0 0 0 0.7453 1 54486 54486 0 0 1 714460 + 70679 27629 47266 48290 82212 82212 0.13074429155426515 VLLFMFGKALI 11 Unmodified _VLLFMFGKALI_ 0 0 0 REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 417.922639 1250.74609 0.00067291 2.8122E-07 0.94698 0.00039577 0.94766 0.00039605 417.9227258071872 99.577 0.20076 99.577 99.473 99.674 0 -0.010447 0.00044245 NaN 0 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 745690 + 70680 27629 47266 48290 0.13074429155426515 VLLFMFGKALI 11 Unmodified _VLLFMFGKALI_ 0 0 0 REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF REV__ENST00000478325.1_1_1:177226076-177250661:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 417.922639 1250.74609 0.33749 0.00014104 0.21954 9.1751E-05 0.55703 0.00023279 417.9224329234427 99.755 0.17274 99.598 99.496 99.669 -0.1575 0.010447 -0.0004696 NaN 0 11 5 3 NaN NaN NaN NaN 0 NaN NaN 0 714460 + 70681 27629 47266 48290 0.13074429155426515 VLLFYPED 8 Unmodified _VLLFYPED_ 0 0 0 ENST00000536140.5_1_12:6940196-6942935:+|nuORF;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3 ENST00000536140.5_1_12:6940196-6942935:+|nuORF ENST00000536140.5_1_12:6940196-6942935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.2588195800781 2 498.257851 994.501149 0.19138 9.5358E-05 -0.85923 -0.00042812 -0.66784 -0.00033276 498.25739374659275 70.023 0.72118 70.023 69.797 70.518 0 184 65 3 0 0 0 0.5953 1 38940 38940 26.341 1.6674 1 57331000 70682 2744 47267 48291 82213 82213 0.0036784694608513746 VLLFYPED 8 Unmodified _VLLFYPED_ 0 0 0 ENST00000536140.5_1_12:6940196-6942935:+|nuORF;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3 ENST00000536140.5_1_12:6940196-6942935:+|nuORF ENST00000536140.5_1_12:6940196-6942935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2574462890625 2 498.257851 994.501149 0.15247 7.5968E-05 -0.71997 -0.00035873 -0.5675 -0.00028276 498.25746202306556 70.506 0.78757 70.028 69.759 70.547 -0.47735 126 53 3 0 0 0 0.5953 1 38601 38601 26.341 1.6674 1 64130000 70683 2744 47267 48291 82214 82214 0.0036784694608513746 VLLFYPED 8 Unmodified _VLLFYPED_ 0 0 0 ENST00000536140.5_1_12:6940196-6942935:+|nuORF;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3 ENST00000536140.5_1_12:6940196-6942935:+|nuORF ENST00000536140.5_1_12:6940196-6942935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.2583923339844 2 498.257851 994.501149 0.41889 0.00020871 -0.076278 -3.8006E-05 0.34261 0.00017071 498.25777980994616 70.028 0.34641 70.059 69.883 70.229 0.030914 33 17 2 0 0 0 0.50586 1 38517 38517 34.187 8.788 1 8139500 70684 2744 47267 48291 82215 82215 0.0036784694608513746 VLLFYPED 8 Unmodified _VLLFYPED_ 0 0 0 ENST00000536140.5_1_12:6940196-6942935:+|nuORF;ENST00000538102.5_1_12:6939819-6943209:+|nuORF;nc|ENSG00000110811|Q8IVL6-2|P3H3;ENSG00000110811|ENST00000290510|P3H3 ENST00000536140.5_1_12:6940196-6942935:+|nuORF ENST00000536140.5_1_12:6940196-6942935:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.2584228515625 2 498.257851 994.501149 0.47406 0.0002362 0.98886 0.00049271 1.4629 0.00072891 498.2583338084182 78.385 0.97485 72.209 71.737 72.712 -6.1757 151 58 3 0 0 0 0.41521 2 51081 51081;51207 42.968 10.851 1 80253000 70685 2744 47267 48291 82216;82217 82216 0.0036784694608513746 VLLGEQFREEY 11 Unmodified _VLLGEQFREEY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.3526000976562 2 691.851167 1381.68778 0.30658 0.00021211 0.83464 0.00057745 1.1412 0.00078955 691.85166783792 40.218 0.26816 39.921 39.782 40.05 -0.29716 41 12 4 0 0 0 0.39949 1 21216 21216 21.537 6.2885 1 15205000 70686 842 47268 48292 82218 82218 0.012204190438296791 VLLGEQFREEY 11 Unmodified _VLLGEQFREEY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.8512573242188 2 691.851167 1381.68778 0.39834 0.00027559 0.052568 3.6369E-05 0.45091 0.00031196 691.8511582950346 40.845 0.28301 40.542 40.376 40.659 -0.30304 31 13 3 0 0 0 0.44182 1 21575 21575 19.362 8.5624 1 8757700 70687 842 47268 48292 82219 82219 0.012204190438296791 VLLGEQFREEY 11 Unmodified _VLLGEQFREEY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 691.8501586914062 2 691.851167 1381.68778 0.14165 9.8002E-05 -0.11875 -8.2159E-05 0.0229 1.5844E-05 691.8509333827632 41.109 0.40636 40.806 40.64 41.047 -0.30304 52 19 4 0 0 0 0.073964 1 21722 21722 45.7 25.285 1 15217000 70688 842 47268 48292 82220 82220 0.012204190438296791 VLLGEQFREEY 11 Unmodified _VLLGEQFREEY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 691.851167 1381.68778 -0.40055 -0.00027712 -0.4394 -0.000304 -0.83996 -0.00058112 691.850843140139 40.682 0.13847 40.682 40.601 40.739 0 -0.062328 -0.00022959 NaN 45.7 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3773600 70689 842 47268 48292 0.012204190438296791 VLLGEQFREEY 11 Unmodified _VLLGEQFREEY_ 0 0 0 nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 nc|ENSG00000061918|Q02153-2|GUCY1B1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 691.851167 1381.68778 0.47413 0.00032803 -0.50076 -0.00034645 -0.026632 -1.8425E-05 692.3517209082324 39.869 0.1249 39.874 39.811 39.936 0.0050545 0.0060087 -0.0017534 NaN 21.537 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 423050 70690 842 47268 48292 0.012204190438296791 VLLGGSPFL 9 Unmodified _VLLGGSPFL_ 0 0 0 REV__ENSG00000164338|ENST00000296792|UTP15 REV__ENSG00000164338|ENST00000296792|UTP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 902.5361938476562 1 902.534581 901.527304 1.1395 0.0010285 0.91753 0.0008281 2.057 0.0018566 902.5355443172199 100.76 0.081154 94.588 94.541 94.623 -6.1757 7 5 2 0 0 0 0.023164 1 67476 67476 60.39 3.8483 1 16466000 + 70691 21909 47269 48293 82221 82221 0.07260160908231228 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8128051757812 2 530.813128 1059.6117 0.99002 0.00052552 1.1996 0.00063679 2.1897 0.0011623 530.8127646360506 81.065 0.47729 81.125 80.866 81.343 0.059929 42 18 3 0 0 0 0.028712 2 44790 44790;44901 56.048 21.861 1 7962100 70692 4168;16184;15680 47270 48294 82222;82223 82222 0.0842811172499296 VLLGHIFYV 9 Unmodified _VLLGHIFYV_ 0 0 0 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-3|MAU2;ENST00000587709.5_1_19:19459550-19466588:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENST00000589947.7_1_19:19459550-19465349:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2;ENSG00000129933|ENST00000262815|MAU2 ENSG00000129933|ENST00000262815|MAU2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.814208984375 2 530.813128 1059.6117 0.55011 0.000292 0.38331 0.00020346 0.93341 0.00049547 530.8134123519909 98.64 0.17464 92.464 92.401 92.576 -6.1757 24 12 3 0 0 0 0.047696 1 65460 65460 45.75 11.563 1 61198000 70693 4168;16184;15680 47270 48294 82224 82224 0.0842811172499296 VLLGIKTHL 9 Unmodified _VLLGIKTHL_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23;CON__Q99PS0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.3268127441406 2 497.326402 992.638252 1.1559 0.00057488 -0.067656 -3.3647E-05 1.0883 0.00054123 497.3263173661229 49.786 0.26001 49.738 49.626 49.886 -0.048824 28 12 3 0 0 0 0.0082661 1 26892 26892 92.491 3.5878 1 3844300 + 70694 210 47271 48295 82225 82225 0.14163800616313438 VLLGIKTHL 9 Unmodified _VLLGIKTHL_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23;CON__Q99PS0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.7060546875 2 497.326402 992.638252 1.2301 0.00061174 -0.37254 -0.00018527 0.85752 0.00042647 497.32596553205144 55.455 0.085632 49.534 49.474 49.56 -5.9211 7 4 2 0 0 0 0.11314 1 35308 35308 38.176 7.539 1 7776000 + 70695 210 47271 48295 82226 82226 0.14163800616313438 VLLGIKTHL 9 Unmodified _VLLGIKTHL_ 0 0 0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075;nc|ENSG00000108244|Q9C075-2|KRT23;CON__Q99PS0 ENST00000582754.5_1_17:39081604-39092927:-|nuORF ENST00000582754.5_1_17:39081604-39092927:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 497.326402 992.638252 1.2267 0.00061005 -0.014349 -7.1361E-06 1.2123 0.00060291 497.32675087045294 55.377 0.066963 49.456 49.407 49.474 -5.9211 -0.14093 4.5845E-05 NaN 92.491 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 9849000 + 70696 210 47271 48295 0.14163800616313438 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.3231811523438 2 495.323328 988.632104 0.46316 0.00022941 -0.86791 -0.0004299 -0.40475 -0.00020048 495.3228539371644 62.191 0.30751 62.158 61.985 62.292 -0.032787 32 15 3 0 0 0 0.070838 1 33954 33954 39.957 15.283 1 18212000 70697 3064 47272 48296 82227 82227 0.13733282384794165 VLLGKVYVV 9 Unmodified _VLLGKVYVV_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.3237915039062 2 495.323328 988.632104 0.64519 0.00031958 -0.0019391 -9.6048E-07 0.64325 0.00031862 495.3233470928044 67.695 0.43137 61.519 61.368 61.799 -6.1757 39 24 2 0 0 0 0.05447 1 44103 44103 43.858 11.553 1 15595000 70698 3064 47272 48296 82228 82228 0.13733282384794165 VLLGLRLRRW 10 Unmodified _VLLGLRLRRW_ 0 0 0 nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000253767|ENST00000398604|PCDHGA8 nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8 nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.4169311523438 2 641.416949 1280.81934 1.39 0.00089158 -0.85297 -0.00054711 0.53704 0.00034447 641.4158199749974 105.79 0.92021 99.61 99.416 100.34 -6.1757 343 124 5 0 0 0 0.72247 1 71230 71230 0.40072 0.093686 1 46385000 70699 10768 47273 48297 82229 82229 0.19016738712889492 VLLGSIAH 8 Unmodified _VLLGSIAH_ 0 0 0 REV__ENSG00000147596|ENST00000276594|PRDM14 REV__ENSG00000147596|ENST00000276594|PRDM14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2465209960938 2 405.247621 808.480688 NaN NaN NaN NaN NaN NaN NaN 70.632 1 70.155 69.655 70.655 -0.47735 0 0 0 0.9706 1 38644 38644 6.3541 0 1 + 70700 20902 47274 48298 82230 82230 0.06878721076930105 VLLIYWQLH 9 Unmodified _VLLIYWQLH_ 0 0 0 ENST00000311085.8_2_5:118484460-118484514:+|nuORF ENST00000311085.8_2_5:118484460-118484514:+|nuORF ENST00000311085.8_2_5:118484460-118484514:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.56689453125 3 395.565732 1183.67537 NaN NaN NaN NaN NaN NaN NaN 55.93 1 55.861 55.361 56.361 -0.068737 0 0 0 0.56093 1 30406 30406 13.906 4.5229 1 70701 11684 47275 48299 82231 82231 0.09087472162082122 VLLKADRLF 9 Unmodified _VLLKADRLF_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.2282104492188 3 358.893848 1073.65972 0.47475 0.00017038 0.073458 2.6364E-05 0.54821 0.00019675 358.89388174218425 47.608 0.48795 47.57 47.361 47.849 -0.038647 62 22 4 0 0 0 0.10247 1 25716 25716 32.786 0 1 54428000 70702 3750 47276 48300 82232 82232 0.12583185645030426 VLLKARLVPA 10 Unmodified _VLLKARLVPA_ 0 0 0 ENSG00000144369|ENST00000304698|FAM171B;nc|ENSG00000144369|Q6P995-2|FAM171B ENSG00000144369|ENST00000304698|FAM171B ENSG00000144369|ENST00000304698|FAM171B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.58154296875 3 360.581493 1078.72265 NaN NaN NaN NaN NaN NaN NaN 43.717 1 43.701 43.201 44.201 -0.015667 0 0 0 0.61655 1 23435 23435 20.581 14.798 1 70703 5604 47277 48301 82233 82233 0.18643751433069156 VLLKKTSLKKL 11 Unmodified _VLLKKTSLKKL_ 0 0 0 ENSG00000177602|ENST00000325418|HASPIN ENSG00000177602|ENST00000325418|HASPIN ENSG00000177602|ENST00000325418|HASPIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.945556640625 2 635.944673 1269.87479 NaN NaN NaN NaN NaN NaN NaN 18.877 1 18.883 18.383 19.383 0.0060463 0 0 0 0.9435 1 9582 9582 0 0 1 70704 8696 47278 48302 82234 82234 0.25065107389968944 VLLKLKKLVN 10 Unmodified _VLLKLKKLVN_ 0 0 0 REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF REV__ENST00000231572.7_1_5:167920941-167921575:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 584.4141235351562 2 584.413009 1166.81146 NaN NaN NaN NaN NaN NaN NaN 105.67 1 99.495 98.995 99.995 -6.1757 0 0 0 1.0061 1 70787 70787 0 0 1 + 70705 24816 47279 48303 82235 82235 0.2347316667276118 VLLKQQIVL 9 Unmodified _VLLKQQIVL_ 0 0 0 REV__ENSG00000132591|ENST00000254928|ERAL1 REV__ENSG00000132591|ENST00000254928|ERAL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7938232421875 2 527.35516 1052.69577 1.9495 0.0010281 -1.0785 -0.00056874 0.87105 0.00045935 527.3544858792693 100.17 0.078735 100.14 100.07 100.15 -0.036301 6 2 3 0 0 0 0.16785 1 55635 55635 23.148 2.2772 1 5305600 + 70706 19864 47280 48304 82236 82236 0.17152642821906738 VLLLCLYLLF 10 Unmodified _VLLLCLYLLF_ 0 0 0 TRPM2|p.T1025M|1|0.03|ENSG00000142185|chr21:44414002-44414002|C/T|missense_variant;ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2 TRPM2|p.T1025M|1|0.03|ENSG00000142185|chr21:44414002-44414002|C/T|missense_variant;ENSG00000142185|ENST00000397928|TRPM2 ENSG00000142185|ENST00000397928|TRPM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.9177856445312 3 403.915373 1208.72429 0.77766 0.00031411 2.9948 0.0012097 3.7725 0.0015238 403.91745193784277 43.665 0.32534 38.9 38.724 39.05 -4.7648 28 19 2 0 0 0 0.70734 1 26618 26618 2.086 0.49373 1 4709200 70707 30200;5397 47281 48305 82237 82237 0.12827624406804716 VLLLEADESAY 11 Unmodified _VLLLEADESAY_ 0 0 0 REV__nc|ENSG00000206418|Q6IQ22|RAB12 REV__nc|ENSG00000206418|Q6IQ22|RAB12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8155517578125 2 611.813719 1221.61288 1.1359 0.00069497 0.74846 0.00045792 1.8844 0.0011529 611.8140391789046 41.935 0.45702 37.296 37.082 37.539 -4.6383 68 28 3 0 0 0 0.25654 2 25165 25165;25310 29.082 5.061 1 37711000 + 70708 24253 47282 48306 82238;82239 82238 0.010942365125856668 VLLLHALA 8 Unmodified _VLLLHALA_ 0 0 0 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 ENSG00000126581|ENST00000590099|BECN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 849.55615234375 1 849.55565 848.548374 1.4549 0.001236 -0.22052 -0.00018734 1.2344 0.0010487 849.5554212914045 105.14 0.27367 98.969 98.773 99.047 -6.1757 78 42 2 0 0 0 0.81107 2 70322 70322;70471 0 0 1 191340000 70709 3958 47283 48307 82240;82241 82240 0.11804171007725017 VLLLHRLH 8 Unmodified _VLLLHRLH_ 0 0 0 ENST00000344575.4_1_7:72848585-72849218:+|nuORF ENST00000344575.4_1_7:72848585-72849218:+|nuORF ENST00000344575.4_1_7:72848585-72849218:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.825439453125 2 500.824361 999.634169 1.701 0.00085192 0.0024376 1.2208E-06 1.7035 0.00085314 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.80992 1 73270 73270 0.69038 0.088878 1 7573500 70710 12016 47284 48308 82242 82242 0.13433755913251844 VLLLINKILLI 11 Unmodified _VLLLINKILLI_ 0 0 0 ENST00000428210.5_1_2:61719906-61720176:-|nuORF ENST00000428210.5_1_2:61719906-61720176:-|nuORF ENST00000428210.5_1_2:61719906-61720176:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.9527587890625 2 632.951967 1263.88938 NaN NaN NaN NaN NaN NaN NaN 16.082 1 16.068 15.568 16.568 -0.014067 0 0 0 0.9435 1 7921 7921 0 0 1 70711 13209 47285 48309 82243 82243 0.26799179538147655 VLLLKKWTVGG 11 Unmodified _VLLLKKWTVGG_ 0 0 0 ENST00000454079.5_1_3:50099151-50099352:+|nuORF ENST00000454079.5_1_3:50099151-50099352:+|nuORF ENST00000454079.5_1_3:50099151-50099352:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5153503417969 3 405.26042 1212.75943 NaN NaN NaN NaN NaN NaN NaN 81.269 1 81.269 80.769 81.769 0 0 0 0 0.9435 1 45109 45109 0 0 1 70712 13564 47286 48310 82244 82244 0.1615600325894775 VLLLKLRKR 9 Unmodified _VLLLKLRKR_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MSMS AL20221201_MKP_PDAC_01 4 380.2763061523438 3 380.276404 1137.80738 NaN NaN NaN NaN NaN NaN NaN 105.7 1 99.526 99.026 100.03 -6.1757 0 0 0 0.8622 1 70806 70806 0 0 1 70713 1568 47287 48311 82245 82245 0.24399121969668158 VLLLKLRKRH 10 Unmodified _VLLLKLRKRH_ 0 0 0 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 ENSG00000090776|ENST00000204961|EFNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.4420166015625 2 638.440424 1274.86629 1.3928 0.00088922 -1.5935 -0.0010173 -0.20068 -0.00012812 638.4392874566564 105.65 0.49801 99.478 99.324 99.822 -6.1757 67 50 2 0 0 0 0.72607 2 70783 70783;70887 0 0 1 5024700 70714 1568 47288 48312 82246;82247 82246 0.2398559826399378 VLLLKLVKRG 10 Unmodified _VLLLKLVKRG_ 0 0 0 REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4 REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4 MSMS AL20221201_MKP_PDAC_01 4 380.2726440429688 3 380.27266 1137.79615 NaN NaN NaN NaN NaN NaN NaN 99.74 1 93.564 93.064 94.064 -6.1757 0 0 0 1.0061 1 66510 66510 0 0 1 + 70715 18685 47289 48313 82248 82248 0.23276299875533368 VLLLLKKLTFK 11 Unmodified _VLLLLKKLTFK_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MSMS AL20221201_MKP_PDAC_01 4 439.3071594238281 3 439.30737 1314.90028 NaN NaN NaN NaN NaN NaN NaN 104.78 1 98.603 98.103 99.103 -6.1757 0 0 0 0.9435 1 70144 70144 0 0 1 + 70716 17400 47290 48314 82249 82249 0.2554258191239569 VLLLLLVVPA 10 Unmodified _VLLLLLVVPA_ 0 0 0 ENSG00000163501|ENST00000295731|IHH ENSG00000163501|ENST00000295731|IHH ENSG00000163501|ENST00000295731|IHH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1049.732421875 1 1049.73328 1048.726 -0.20047 -0.00021044 0.50743 0.00053267 0.30697 0.00032223 1049.7339112808472 61.433 0.2371 60.944 60.858 61.095 -0.48932 12 10 2 0 0 0 0.72196 1 33530 33530 0.45834 0 1 1544700 70717 7004 47291 48315 82250 82250 0.20359001487099704 VLLLLVEQG 9 Unmodified _VLLLLVEQG_ 0 0 0 REV__ENST00000443374.6_1_10:52389585-52389780:+|nuORF REV__ENST00000443374.6_1_10:52389585-52389780:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3109130859375 2 492.310418 982.606283 1.5566 0.00076633 0.32779 0.00016138 1.8844 0.0009277 492.3103898043626 109.25 0.053268 103.08 103.05 103.1 -6.1757 10 7 2 0 0 0 0.59218 1 72977 72977 1.8442 0 1 1995200 + 70718 27113 47292 48316 82251 82251 0.11428388142519452 VLLLLVEQG 9 Unmodified _VLLLLVEQG_ 0 0 0 REV__ENST00000443374.6_1_10:52389585-52389780:+|nuORF REV__ENST00000443374.6_1_10:52389585-52389780:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.3109741210938 2 492.310418 982.606283 NaN NaN NaN NaN NaN NaN NaN 109.43 1 103.26 102.76 103.76 -6.1757 0 0 0 0.84737 1 73084 73084 1.8442 0 1 + 70719 27113 47292 48316 82252 82252 0.11428388142519452 VLLLLVRKKR 10 Unmodified _VLLLLVRKKR_ 0 0 0 nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3;ENST00000567674.1_1_16:68721613-68732300:+|nuORF;ENST00000542274.5_1_16:68679206-68732300:+|nuORF nc|ENSG00000062038|P22223-2|CDH3 nc|ENSG00000062038|P22223-2|CDH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2979431152344 3 413.299209 1236.8758 NaN NaN NaN NaN NaN NaN NaN 72.297 1 71.821 71.321 72.321 -0.47609 0 0 0 1.0061 1 39566 39566 0 0 1 70720 846 47293 48317 82253 82253 0.26683366549536913 VLLLPCLPLKR 11 Unmodified _VLLLPCLPLKR_ 0 0 0 REV__ENST00000229328.9_1_12:120119136-120119388:+|nuORF REV__ENST00000229328.9_1_12:120119136-120119388:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.9116821289062 2 632.912319 1263.81008 NaN NaN NaN NaN NaN NaN NaN 84.929 1 84.929 84.429 85.429 0 0 0 0 0.9435 1 47073 47073 0 0 1 + 70721 24804 47294 48318 82254 82254 0.18873209312300787 VLLLVAPPLPA 11 Unmodified _VLLLVAPPLPA_ 0 0 0 nc|ENSG00000125912|Q969V3-2|NCLN;ENSG00000125912|ENST00000246117|NCLN nc|ENSG00000125912|Q969V3-2|NCLN nc|ENSG00000125912|Q969V3-2|NCLN MSMS AL20221201_MKP_PDAC_01 4 368.2481994628906 3 368.245999 1101.71617 NaN NaN NaN NaN NaN NaN NaN 105.24 1 99.065 98.565 99.565 -6.1757 0 0 0 0.94337 1 70508 70508 0.094841 0.094841 1 70722 3909 47295 48319 82255 82255 0.1693781348169523 VLLMLWLPI 9 Unmodified _VLLMLWLPI_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5658569335938 3 366.564563 1096.67186 0.10388 3.808E-05 3.2848 0.0012041 3.3887 0.0012422 366.565789553386 45.774 0.18304 45.746 45.661 45.844 -0.028015 12 8 2 0 0 0 0.58466 1 24643 24643 2.9952 0 1 3245900 70723 5701 47296 48320 82256 82256 0.12739086063879768 VLLNEPGS 8 Unmodified _VLLNEPGS_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.7270202636719 2 414.726718 827.438883 0.0016672 6.9142E-07 1.2125 0.00050285 1.2141 0.00050354 414.72699245930744 79.698 0.34407 79.698 79.475 79.819 0 22 14 2 0 0 0 0.75262 1 44255 44255 12.532 0 1 527330 + 70724 17558 47297 48321 82257 82257 0.018261205977637474 VLLNGIESL 9 Unmodified _VLLNGIESL_ 0 0 0 ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2847900390625 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 74.088 1 74.088 73.588 74.588 0 0 0 0 0.7243 1 41234 41234 8.5933 0 1 70725 14339 47298 48322 82258 82258 0.0742322472875685 VLLNGIESL 9 Unmodified _VLLNGIESL_ 0 0 0 ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2847290039062 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 74.375 1 74.375 73.875 74.875 0 0 0 0 0.82396 1 41386 41386 4.756 0 1 70726 14339 47298 48322 82259 82259 0.0742322472875685 VLLNGIESL 9 Unmodified _VLLNGIESL_ 0 0 0 ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2846984863281 2 479.2844 956.554247 0.81896 0.00039252 -0.29832 -0.00014298 0.52065 0.00024954 479.28417265903977 73.969 0.52387 73.493 73.43 73.954 -0.47588 34 22 2 0 0 0 0.54444 1 40625 40625 4.756 0 1 698370 70727 14339 47298 48322 82260 82260 0.0742322472875685 VLLNGIESL 9 Unmodified _VLLNGIESL_ 0 0 0 ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.283935546875 2 479.2844 956.554247 NaN NaN NaN NaN NaN NaN NaN 75.761 1 75.284 74.784 75.784 -0.47714 0 0 0 0.7243 1 41473 41473 8.5933 0 1 70728 14339 47298 48322 82261 82261 0.0742322472875685 VLLNGIESL 9 Unmodified _VLLNGIESL_ 0 0 0 ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF ENST00000494735.1_1_7:142960709-142960961:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2788696289062 2 479.2844 956.554247 0.38099 0.0001826 -0.58896 -0.00028228 -0.20797 -9.9679E-05 479.283997422818 70.046 1.5932 70.077 69.806 71.399 0.030914 178 75 5 0 0 0 0.54444 1 39183 39183 4.756 0 1 339710000 70729 14339 47298 48322 82262 82262 0.0742322472875685 VLLPGAGGGGG 11 Unmodified _VLLPGAGGGGG_ 0 0 0 ENST00000545087.1_1:2143861-2144335:-|nuORF ENST00000545087.1_1:2143861-2144335:-|nuORF ENST00000545087.1_1:2143861-2144335:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 854.4745483398438 1 854.473043 853.465767 1.4264 0.0012188 0.50605 0.0004324 1.9325 0.0016512 854.4733726670526 105.46 0.14846 99.283 99.211 99.359 -6.1757 77 30 4 0 0 0 0.7453 1 70681 70681 0 0 1 99993000 70730 15085 47299 48323 82263 82263 0.03317229208971639 VLLPGGFP 8 Unmodified _VLLPGGFP_ 0 0 0 ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 400.2381896972656 2 400.239264 798.463976 NaN NaN NaN NaN NaN NaN NaN 107.53 1 101.35 100.85 101.85 -6.1757 0 0 0 0.97444 1 71912 71912 0.79363 0 1 70731 30 47300 48324 82264 82264 0.05668220190989359 VLLPGGFP 8 Unmodified _VLLPGGFP_ 0 0 0 ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 400.2382202148438 2 400.239264 798.463976 NaN NaN NaN NaN NaN NaN NaN 107.88 1 101.7 101.2 102.2 -6.1757 0 0 0 0.97444 1 72127 72127 0.79363 0 1 70732 30 47300 48324 82265 82265 0.05668220190989359 VLLPGGFP 8 Unmodified _VLLPGGFP_ 0 0 0 ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant ANXA7|p.P121L|1|0.31|ENSG00000138279|chr10:73397172-73397172|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 400.2378234863281 2 400.239264 798.463976 NaN NaN NaN NaN NaN NaN NaN 108.05 1 101.88 101.38 102.38 -6.1757 0 0 0 0.97444 1 72232 72232 0.79363 0 1 70733 30 47300 48324 82266 82266 0.05668220190989359 VLLPKIIT 8 Unmodified _VLLPKIIT_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.6177368164062 1 896.617916 895.61064 1.2215 0.0010952 -1.9344 -0.0017344 -0.71294 -0.00063923 896.6158888464308 103.81 0.10306 97.63 97.578 97.681 -6.1757 33 21 2 0 0 0 0.80992 1 69570 69570 0.69038 0 1 7268000 + + 70734 16827 47301 48325 82267 82267 0.15865897356093228 VLLPKLPQF 9 Unmodified _VLLPKLPQF_ 0 0 0 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 ENSG00000123353|ENST00000243045|ORMDL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.8370361328125 2 527.836603 1053.65865 1.0401 0.00054898 0.58866 0.00031071 1.6287 0.00085969 527.8368571703822 81.126 0.45571 81.186 80.941 81.397 0.059929 44 17 3 0 0 0 0.012148 2 44911 44807;44911 74.423 51.274 1 5866700 70735 3701 47302 48326 82268;82269 82269 0.13396971276119984 VLLPLPTA 8 Unmodified _VLLPLPTA_ 0 0 0 ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000021645|Q9HDB5|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 ENSG00000021645|ENST00000335750|NRXN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.2680358886719 2 412.268022 822.521491 1.1696 0.00048217 -1.3511 -0.00055702 -0.18154 -7.4844E-05 412.26753574260016 102.22 0.51561 96.046 95.898 96.413 -6.1757 66 42 3 0 0 0 0.81107 2 68575 68575;68688 0 0 1 9377600 70736 527 47303 48327 82270;82271 82270 0.10313062396551231 VLLPLRVTL 9 Unmodified _VLLPLRVTL_ 0 0 0 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 ENSG00000138678|ENST00000264409|GPAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.3482666015625 2 512.349877 1022.6852 0.10463 5.3605E-05 -0.60095 -0.0003079 -0.49632 -0.00025429 512.349622641063 84.584 0.3064 84.647 84.484 84.79 0.063171 23 13 3 0 0 0 0.0082475 1 46792 46792 92.653 0.16189 1 36741000 70737 5087 47304 48328 82272 82272 0.17476660167460523 VLLPTVNLL 9 Unmodified _VLLPTVNLL_ 0 0 0 ENST00000477184.5_1_7:102123232-102123718:-|nuORF;ENST00000446874.5_1_7:44068127-44068763:-|nuORF ENST00000477184.5_1_7:102123232-102123718:-|nuORF ENST00000477184.5_1_7:102123232-102123718:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.3236389160156 2 491.320786 980.627018 NaN NaN NaN NaN NaN NaN NaN 80.946 1 74.77 74.27 75.27 -6.1757 0 0 0 0.54015 1 53112 53112 14.582 5.2343 1 70738 13471 47305 48329 82273 82273 0.13592978522194699 VLLQSLCVA 9 Carbamidomethyl (C) _VLLQSLC(Carbamidomethyl (C))VA_ VLLQSLC(1)VA VLLQSLC(55)VA 0 1 0 ENSG00000121858|ENST00000241261|TNFSF10;nc|ENSG00000121858|P50591-2|TNFSF10;ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 501.78662109375 2 501.786253 1001.55795 NaN NaN NaN NaN NaN NaN NaN 76.994 1 70.818 70.318 71.318 -6.1757 0 0 0 0.056448 1 50357 50357 54.774 10.915 1 70739 3602;13761 47306 48330 82274 82274 359 0.05723571230964808 VLLQVGFQ 8 Unmodified _VLLQVGFQ_ 0 0 0 nc|ENSG00000182934|P08240-2|SRPRA nc|ENSG00000182934|P08240-2|SRPRA nc|ENSG00000182934|P08240-2|SRPRA MSMS AL20221201_MKP_PDAC_01 4 452.2689514160156 2 452.268553 902.522553 NaN NaN NaN NaN NaN NaN NaN 104.72 1 98.543 98.043 99.043 -6.1757 0 0 0 0.97444 1 70109 70109 0.79363 0 1 70740 16441 47307 48331 82275 82275 0.06739276765483737 VLLREEKY 8 Unmodified _VLLREEKY_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7818603515625 2 525.303124 1048.5917 0.41798 0.00021956 0.41071 0.00021574 0.82868 0.00043531 525.3031185757187 37.654 0.37125 37.654 37.475 37.846 0 35 18 3 0 0 0 8.7369 1 19985 19985 15.847 1.0089 1 7755300 70741 6255 47308 48332 82276 82276 0.06934315994362805 VLLRPSRRVR 10 Unmodified _VLLRPSRRVR_ 0 0 0 ENSG00000278195|ENST00000610913|SSTR3 ENSG00000278195|ENST00000610913|SSTR3 ENSG00000278195|ENST00000610913|SSTR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.408203125 2 626.409655 1250.80476 NaN NaN NaN NaN NaN NaN NaN 103.13 1 103.08 102.58 103.58 -0.047928 0 0 0 1.0024 1 57273 57273 0.40072 0 1 70742 10931 47309 48333 82277 82277 0.18938666564713458 VLLRRRLR 8 Unmodified _VLLRRRLR_ 0 0 0 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 ENSG00000154252|ENST00000192314|GAL3ST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.2527770996094 3 361.252481 1080.73561 NaN NaN NaN NaN NaN NaN NaN 101.54 1 101.49 100.99 101.99 -0.04216 0 0 0 0.97444 1 56410 56410 0.45834 0 1 70743 6311 47310 48334 82278 82278 0.19847627335821016 VLLSEILHL 9 Unmodified _VLLSEILHL_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8247680664062 2 518.823692 1035.63283 2.0461 0.0010616 0.18569 9.6339E-05 2.2318 0.0011579 518.8239105412457 94.636 0.30324 94.65 94.516 94.819 0.014244 25 11 3 0 0 0 0.019979 1 52599 52599 63.563 23.114 1 3123000 70744 1143 47311 48335 82279 82279 0.11644077033861322 VLLSEILHL 9 Unmodified _VLLSEILHL_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8244018554688 2 518.823692 1035.63283 1.3444 0.00069749 0.29461 0.00015285 1.639 0.00085034 518.8234979736585 100.16 0.1343 93.988 93.924 94.058 -6.1757 12 7 2 0 0 0 0.0089973 1 66920 66920 86.121 36.452 1 19729000 70745 1143 47311 48335 82280 82280 0.11644077033861322 VLLSEILHL 9 Unmodified _VLLSEILHL_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.823692 1035.63283 0.30719 0.00015938 0.70312 0.00036479 1.0103 0.00052417 518.8239784343353 95.141 0.2241 94.773 94.698 94.922 -0.36814 0.061411 0.00031854 NaN 63.563 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 417670 70746 1143 47311 48335 0.11644077033861322 VLLSIYPRV 9 Unmodified _VLLSIYPRV_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.33349609375 2 530.331685 1058.64882 0.5539 0.00029375 -0.13914 -7.3788E-05 0.41477 0.00021996 530.3319373779289 68.501 0.36372 68.526 68.318 68.681 0.025154 52 17 4 0 0 0 0.0090948 2 37584 37584;37681 85.272 17.191 1 7213700 70747 7756 47312 48336 82281;82282 82281 0.12183783270734239 VLLSIYPRV 9 Unmodified _VLLSIYPRV_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MSMS AL20221201_MKP_PDAC_01 4 530.3319702148438 2 530.331685 1058.64882 NaN NaN NaN NaN NaN NaN NaN 80.758 1 74.583 74.083 75.083 -6.1757 0 0 0 0.074615 1 52988 52988 49.933 0 1 70748 7756 47312 48336 82283 82283 0.12183783270734239 VLLTATPVGL 10 Unmodified _VLLTATPVGL_ 0 0 0 ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.3108520507812 2 492.310418 982.606283 0.24955 0.00012285 -1.5929 -0.00078421 -1.3434 -0.00066135 492.30970926065436 76.993 0.82358 70.818 70.431 71.254 -6.1757 65 45 2 0 0 0 0.31022 2 50232 50232;50505 26.884 0.61551 1 11354000 70749 566 47313 48337 82284;82285 82284 0.11428388142530821 VLLTFYSTMDS 11 Unmodified _VLLTFYSTMDS_ 0 0 0 REV__ENSG00000124140|ENST00000243964|SLC12A5 REV__ENSG00000124140|ENST00000243964|SLC12A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.8786010742188 3 426.209173 1275.60569 0.087732 3.7392E-05 4.3909 0.0018714 4.4786 0.0019088 426.545189061292 15.358 0.099487 15.364 15.317 15.416 0.0057764 12 5 3 0 0 0 0.72952 1 7654 7654 0.50596 0 1 1380100 + 70750 19417 47314 48338 82286 82286 -0.021088193595005578 VLLTGLHAV 9 Unmodified _VLLTGLHAV_ 0 0 0 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF ENSG00000175155|ENST00000312655|YPEL2;nc|ENSG00000090238|P61236|YPEL3 nc|ENSG00000090238|P61236|YPEL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.7894592285156 2 461.789653 921.564752 -0.047637 -2.1998E-05 -1.6256 -0.00075069 -1.6733 -0.00077269 461.7892144728529 56.332 0.18479 56.263 56.155 56.339 -0.068737 15 9 2 0 0 0 0.078417 1 30642 30642 38.151 15.003 1 1514400 70751 1740;1550 47315 48339 82287 82287 0.10083252173853907 VLLTHCHSL 9 Carbamidomethyl (C) _VLLTHC(Carbamidomethyl (C))HSL_ VLLTHC(1)HSL VLLTHC(54)HSL 0 1 0 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 ENSG00000130766|ENST00000253063|SESN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.528076171875 3 360.52706 1078.55935 1.3768 0.00049636 -0.56834 -0.0002049 0.80843 0.00029146 360.52687390589864 33.155 0.27808 29.299 29.202 29.48 -3.8562 29 17 2 0 0 0 0.032796 1 18966 18966 53.833 13.883 1 14915000 70752 4256 47316 48340 82288 82288 428 0.02321205319708497 VLLTKELSY 9 Unmodified _VLLTKELSY_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000529206.1_1_14:95595738-95599795:-|nuORF nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3134765625 2 533.313158 1064.61176 0.42613 0.00022726 -0.2309 -0.00012314 0.19523 0.00010412 533.312959786983 48.257 0.13414 47.895 47.801 47.935 -0.36174 9 6 2 0 0 0 0.16226 1 25903 25903 26.884 0 1 2335200 70753 1865 47317 48341 82289 82289 0.08204066934331422 VLLTKELSY 9 Unmodified _VLLTKELSY_ 0 0 0 nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000529206.1_1_14:95595738-95599795:-|nuORF nc|ENSG00000100697|Q9UPY3-2|DICER1 nc|ENSG00000100697|Q9UPY3-2|DICER1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 533.313158 1064.61176 1.1962 0.00063794 -0.53814 -0.000287 0.65805 0.00035095 533.3127462847863 54.116 0.28628 48.25 48.034 48.32 -5.8653 0.17769 -0.00010779 NaN 26.884 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 11256000 70754 1865 47317 48341 0.08204066934331422 VLLTLLVLT 9 Unmodified _VLLTLLVLT_ 0 0 0 REV__nc|ENSG00000139219|P02458-1|COL2A1 REV__nc|ENSG00000139219|P02458-1|COL2A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 984.6729736328125 1 984.670346 983.663069 1.5956 0.0015712 -0.85332 -0.00084024 0.74231 0.00073093 984.6693480363941 103.81 0.083633 97.631 97.578 97.662 -6.1757 19 14 2 0 0 0 0.62242 1 69551 69551 0 0 1 4915300 + 70755 20394 47318 48342 82290 82290 0.17058435699016172 VLLTVLERV 9 Unmodified _VLLTVLERV_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.286865234375 2 521.336967 1040.65938 1.2505 0.00065193 -0.58574 -0.00030537 0.66477 0.00034657 521.3364001962672 94.047 0.27975 87.871 87.732 88.012 -6.1757 20 15 2 0 0 0 0.16102 1 62355 62355 28.495 2.2264 1 4992400 70756 8225 47319 48343 82291 82291 0.14067765925165077 VLLVAQPQL 9 Unmodified _VLLVAQPQL_ 0 0 0 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 ENSG00000002587|ENST00000002596|HS3ST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.3123168945312 2 490.810585 979.606617 1.5299 0.00075088 -0.52376 -0.00025707 1.0061 0.00049382 490.8098484656532 106.4 0.21558 100.23 100.08 100.29 -6.1757 43 34 2 0 0 0 0.61381 1 71206 71206 0.52476 0 1 1960500 70757 262 47320 48344 82292 82292 0.11599807862364742 VLLVLNRDL 9 Unmodified _VLLVLNRDL_ 0 0 0 REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.8344116210938 2 527.834591 1053.65463 0.033735 1.7806E-05 0.04564 2.409E-05 0.079375 4.1897E-05 527.8345165061713 65.585 0.16907 65.101 65 65.169 -0.48428 14 7 3 0 0 0 0.08691 1 35820 35820 36.127 3.8215 1 1109500 + 70758 24573 47321 48345 82293 82293 0.12994881782424272 VLLVLNRDL 9 Unmodified _VLLVLNRDL_ 0 0 0 REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.834591 1053.65463 0.033735 1.7806E-05 0.04564 2.409E-05 0.079375 4.1897E-05 527.8345165061713 65.585 0.16907 65.101 65 65.169 -0.48428 0.016906 -0.0005021 NaN 36.127 14 7 3 NaN NaN NaN NaN 0 NaN NaN 0 1109500 + 70759 24573 47321 48345 0.12994881782424272 VLLVLNRDL 9 Unmodified _VLLVLNRDL_ 0 0 0 REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF REV__ENST00000558660.1_1_15:89007913-89008959:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 527.834591 1053.65463 0.55083 0.00029075 0.75512 0.00039858 1.3059 0.00068932 527.8349380574433 65.067 0.20199 65.067 64.978 65.18 7.6294E-06 -0.016906 0.00024688 NaN 36.127 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2528600 + 70760 24573 47321 48345 0.12994881782424272 VLLWASVLFL 10 Unmodified _VLLWASVLFL_ 0 0 0 ENSG00000172478|ENST00000388934|MAB21L4;nc|ENSG00000172478|Q08AI8-3|MAB21L4;nc|ENSG00000172478|Q08AI8-2|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.85888671875 2 580.857535 1159.70052 4.489 0.0026075 -2.196 -0.0012756 2.293 0.0013319 580.8563301583334 99.296 0.14315 99.268 99.189 99.332 -0.028282 11 4 3 0 0 0 0.33553 1 55164 55164 25.399 0 1 3136800 70761 8225 47322 48346 82294 82294 0.12705526964646197 VLLYTSLI 8 Unmodified _VLLYTSLI_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2889709472656 2 461.286411 920.55827 NaN NaN NaN NaN NaN NaN NaN 69.904 1 69.904 69.404 70.404 0 0 0 0 0.97444 1 38945 38945 2.8892 0 1 70762 6315 47323 48347 82295 82295 0.09481314222477977 VLMAQKEGKR 10 Unmodified _VLMAQKEGKR_ 0 0 0 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.3346557617188 2 580.334433 1158.65431 0.7224 0.00041923 -0.13939 -8.0895E-05 0.583 0.00033834 580.33431157743 62.529 0.46854 62.507 62.284 62.752 -0.021614 96 24 5 0 0 0 0.41822 1 34187 34187 24.021 2.2739 1 324890000 70763 8048 47324 48348 82296 82296 0.08133138790913108 VLMAQKEGKR 10 Unmodified _VLMAQKEGKR_ 0 0 0 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3353271484375 2 580.334433 1158.65431 0.63785 0.00037017 0.7313 0.0004244 1.3691 0.00079456 580.3347904953839 68.141 0.71198 61.966 61.636 62.348 -6.1757 107 42 3 0 0 0 0.36277 2 44356 44356;44495 34.402 7.5181 1 118060000 70764 8048 47324 48348 82297;82298 82297 0.08133138790913108 VLMAQKEGKR 10 Unmodified _VLMAQKEGKR_ 0 0 0 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 ENSG00000170949|ENST00000683776|ZNF160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3355102539062 2 580.334433 1158.65431 0.97235 0.00056429 0.62571 0.00036312 1.5981 0.00092741 580.3347435546026 69.108 1.0466 62.932 62.348 63.394 -6.1757 193 57 4 0 0 0 0.41822 2 45053 45053;45174 24.021 7.0783 1 509460000 70765 8048 47324 48348 82299;82300 82299 0.08133138790913108 VLMARRRLAR 10 Unmodified _VLMARRRLAR_ 0 0 0 ENSG00000011132|ENST00000316757|APBA3;ENST00000588984.5_1_19:3751026-3754498:-|nuORF;ENST00000590064.1_1_19:3753732-3753969:-|nuORF ENSG00000011132|ENST00000316757|APBA3 ENSG00000011132|ENST00000316757|APBA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5980834960938 3 414.596031 1240.76626 3.9559 0.0016401 2.4176 0.0010023 6.3735 0.0026424 414.5969805378491 98.76 0.19609 98.731 98.637 98.833 -0.028282 11 6 2 0 0 0 0.72464 1 54879 54879 0.15932 0 1 3091800 70766 435 47325 48349 82301 82301 0.15551037658565292 VLMAVTHTL 9 Oxidation (M) _VLM(Oxidation (M))AVTHTL_ VLM(1)AVTHTL VLM(74)AVTHTL 0 0 1 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7792358398438 2 500.778428 999.542302 0.20319 0.00010175 0.19019 9.5245E-05 0.39338 0.000197 500.7787639490644 40.335 0.27151 40.038 39.882 40.154 -0.29716 33 12 4 0 0 0 0.012148 1 21304 21304 74.423 55.166 1 3253700 70767 754 47326 48350 82302 82302 117 0.04251284713916448 VLMAVTHTL 9 Oxidation (M) _VLM(Oxidation (M))AVTHTL_ 0 0 1 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2 nc|ENSG00000054179|Q9Y5L3-3|ENTPD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.778428 999.542302 0.35547 0.00017801 0.25437 0.00012738 0.60983 0.00030539 501.27997396668445 39.981 0.19317 39.986 39.811 40.004 0.0050545 -0.026046 5.2792E-05 NaN 74.423 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1718500 70768 754 47326 48350 117 0.04251284713916448 VLMDHILNL 9 Oxidation (M) _VLM(Oxidation (M))DHILNL_ VLM(1)DHILNL VLM(52)DHILNL 0 0 1 ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.29833984375 2 542.296985 1082.57942 0.49501 0.00026844 -1.8434 -0.00099966 -1.3484 -0.00073122 542.296217183756 62.337 0.63467 61.85 61.426 62.061 -0.48764 55 29 3 0 0 0 0.03568 1 33891 33891 52.268 12.311 1 5815800 70769 10429 47327 48351 82303 82303 1694 0.04142956259670427 VLMDHILNL 9 Unmodified _VLMDHILNL_ 0 0 0 ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK ENSG00000213341|ENST00000370397|CHUK MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2996826171875 2 534.299527 1066.5845 1.2523 0.00066909 0.91658 0.00048973 2.1689 0.0011588 534.2995759362217 96.496 0.35428 90.321 90.136 90.491 -6.1757 45 20 3 0 0 0 0.037253 2 63868 63868;63993 65.235 12.904 1 46105000 70770 10429 47327 48352 82304;82305 82304 0.053872601223019956 VLMDRLPSL 9 Oxidation (M) _VLM(Oxidation (M))DRLPSL_ VLM(1)DRLPSL VLM(51)DRLPSL 0 0 1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.296875 2 530.296985 1058.57942 -0.47463 -0.0002517 -0.9182 -0.00048692 -1.3928 -0.00073861 530.2967061398188 56.008 0.3961 55.529 55.339 55.735 -0.47857 49 19 4 0 0 0 0.037253 2 30355 30355;30457 51.415 27.395 1 14925000 70771 5401 47328 48353 82306;82307 82306 993 0.052469562596797914 VLMDRLPSL 9 Oxidation (M) _VLM(Oxidation (M))DRLPSL_ VLM(1)DRLPSL VLM(51)DRLPSL 0 0 1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2959594726562 2 530.296985 1058.57942 NaN NaN NaN NaN NaN NaN NaN 55.619 1 55.55 55.05 56.05 -0.068737 0 0 0 0.06887 1 30230 30230 51.415 20.779 1 70772 5401 47328 48353 82308 82308 993 0.052469562596797914 VLMEKELPGF 10 Oxidation (M) _VLM(Oxidation (M))EKELPGF_ VLM(1)EKELPGF VLM(44)EKELPGF 0 0 1 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.31103515625 2 589.809925 1177.6053 0.12381 7.3023E-05 0.0022243 1.3119E-06 0.12603 7.4335E-05 589.8102508487789 54.328 0.079601 53.861 53.803 53.882 -0.46664 5 3 2 0 0 0 0.11824 1 29447 29447 43.772 26.659 1 4455200 70773 7111 47329 48354 82309 82309 1225 0.02359805711307672 VLMEKELPGF 10 Oxidation (M) _VLM(Oxidation (M))EKELPGF_ 0 0 1 ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P ENSG00000163993|ENST00000296370|S100P MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 589.809925 1177.6053 0.44264 0.00026107 0.44195 0.00026067 0.88459 0.00052174 590.3116327228328 53.817 0.15234 53.817 53.705 53.858 0 -0.022065 0.0004337 NaN 43.772 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 2346400 70774 7111 47329 48354 1225 0.02359805711307672 VLMENIVYL 9 Oxidation (M) _VLM(Oxidation (M))ENIVYL_ VLM(1)ENIVYL VLM(46)ENIVYL 0 0 1 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2999877929688 2 555.299193 1108.58383 0.93951 0.00052171 -0.80742 -0.00044836 0.13209 7.3347E-05 555.2988611402686 74.906 0.35249 74.429 74.23 74.582 -0.47714 34 14 3 0 0 0 0.047196 1 40951 40951 46.021 20.622 1 3375300 70775 4530 47330 48355 82310 82310 825 0.03388420682586002 VLMENIVYL 9 Oxidation (M) _VLM(Oxidation (M))ENIVYL_ VLM(1)ENIVYL VLM(55)ENIVYL 0 0 1 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2991943359375 2 555.299193 1108.58383 0.47506 0.0002638 2.8141 0.0015627 3.2891 0.0018265 555.30076244688 82.393 0.42363 76.217 75.932 76.355 -6.1757 29 22 2 0 0 0 0.031062 1 54085 54085 54.774 14.816 1 8792700 70776 4530 47330 48355 82311 82311 825 0.03388420682586002 VLMENIVYL 9 Unmodified _VLMENIVYL_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.30078125 2 547.301736 1092.58892 0.32913 0.00018013 -0.4899 -0.00026812 -0.16077 -8.799E-05 547.301530016561 89.925 0.32463 89.423 89.277 89.601 -0.50171 29 17 2 0 0 0 0.49272 1 49142 49142 7.9102 1.5561 1 739340 70777 4530 47330 48356 82312 82312 0.0463272454521757 VLMENIVYL 9 Unmodified _VLMENIVYL_ 0 0 0 ENSG00000133706|ENST00000394434|LARS1;nc|ENSG00000133706|Q9P2J5-2|LARS1;nc|ENSG00000133706|Q9P2J5-3|LARS1 ENSG00000133706|ENST00000394434|LARS1 ENSG00000133706|ENST00000394434|LARS1 MSMS AL20221201_MKP_PDAC_01 4 547.3016967773438 2 547.301736 1092.58892 NaN NaN NaN NaN NaN NaN NaN 99.485 1 93.309 92.809 93.809 -6.1757 0 0 0 0.10545 1 66271 66271 42.095 15.211 1 70778 4530 47330 48356 82313 82313 0.0463272454521757 VLMERHERT 9 Unmodified _VLMERHERT_ 0 0 0 REV__nc|ENSG00000148187|Q96E11-8|MRRF REV__nc|ENSG00000148187|Q96E11-8|MRRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.305419921875 2 585.806039 1169.59753 0.7733 0.000453 -1.9814 -0.0011607 -1.2081 -0.00070771 586.3054449275604 70.219 0.35094 70.255 70.073 70.424 0.035507 55 16 4 0 0 0 0.15471 1 38616 38616 27.629 4.8925 1 7203500 + 70779 20931 47331 48357 82314 82314 0.019510912343776 VLMGYQTYPQ 10 Unmodified _VLMGYQTYPQ_ 0 0 0 nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENSG00000010322|ENST00000345716|NISCH nc|ENSG00000010322|Q9Y2I1-2|NISCH nc|ENSG00000010322|Q9Y2I1-2|NISCH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2017211914062 3 400.530358 1198.56925 0.84008 0.00033648 -1.7271 -0.00069177 -0.88705 -0.00035529 400.5296980851242 49.913 0.27603 49.52 49.374 49.65 -0.3923 39 13 4 0 0 0 0.23946 1 26782 26782 3.5871 1.0886 1 7298100 70780 421 47332 48358 82315 82315 -0.022096514655686406 VLMQHRPTL 9 Unmodified _VLMQHRPTL_ 0 0 0 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 ENSG00000171940|ENST00000371471|ZNF217 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5436706542969 3 365.542821 1093.60663 1.4263 0.00052138 0.068942 2.5201E-05 1.4953 0.00054658 365.54281276172793 34.443 0.38873 30.348 30.16 30.549 -4.0951 39 22 2 0 0 0 0.020316 2 19807 19807;19929 63.227 42.813 1 19531000 70781 8162 47333 48359 82316;82317 82316 0.0635748459073966 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(66)TEDIKL 0 0 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.294921875 2 539.29665 1076.57875 -0.13862 -7.4755E-05 -0.77511 -0.00041802 -0.91373 -0.00049277 539.2964796842937 51.996 0.31012 51.996 51.842 52.152 0 31 13 3 0 0 0 0.017075 1 28714 28714 66.457 32.354 1 43883000 70782 3070;16132 47334 48360 82318 82318 532 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(52)TEDIKL 0 0 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.29736328125 2 539.29665 1076.57875 0.055278 2.9811E-05 1.0865 0.00058595 1.1418 0.00061577 539.2973665575968 52.35 0.57347 52.35 52.129 52.702 0 49 16 4 0 0 0 0.036857 1 28965 28965 51.63 17.527 1 36040000 70783 3070;16132 47334 48360 82319 82319 532 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(76)TEDIKL 0 0 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.296875 2 539.29665 1076.57875 0.37921 0.0002045 -0.88789 -0.00047884 -0.50868 -0.00027433 539.2963238467104 52.452 0.28637 52.019 51.891 52.177 -0.43367 32 14 3 0 0 0 0.011671 1 28312 28312 75.761 33.666 1 16411000 70784 3070;16132 47334 48360 82320 82320 532 0.04352116819973162 VLMTEDIKL 9 Oxidation (M) _VLM(Oxidation (M))TEDIKL_ VLM(1)TEDIKL VLM(76)TEDIKL 0 0 1 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-6|EIF4G1;ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2962036132812 2 539.29665 1076.57875 0.25698 0.00013859 -0.54027 -0.00029137 -0.28329 -0.00015278 539.2968183038774 52.795 0.33652 52.344 52.159 52.496 -0.45173 37 16 3 0 0 0 0.011671 1 28508 28508 75.761 24.906 1 14935000 70785 3070;16132 47334 48360 82321 82321 532 0.04352116819973162 VLMVLLFIH 9 Unmodified _VLMVLLFIH_ 0 0 0 nc|ENSG00000014257|P15309-2|ACP3 nc|ENSG00000014257|P15309-2|ACP3 nc|ENSG00000014257|P15309-2|ACP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.8338623046875 2 542.833006 1083.65146 NaN NaN NaN NaN NaN NaN NaN 69.961 1 69.961 69.461 70.461 0 0 0 0 0.83812 1 38977 38977 5.2307 2.3415 1 70786 16021 47335 48361 82322 82322 0.11297915404043124 VLNALDDII 9 Unmodified _VLNALDDII_ 0 0 0 REV__STX8-RTN1|1|fusion REV__STX8-RTN1|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.2822570800781 2 493.281857 984.549162 NaN NaN NaN NaN NaN NaN NaN 55.818 1 55.749 55.249 56.249 -0.068737 0 0 0 0.6306 1 30342 30342 11.64 0 1 + 70787 22470 47336 48362 82323 82323 0.056269208661547054 VLNIDLAPT 9 Unmodified _VLNIDLAPT_ 0 0 0 ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000137573|ENST00000402687|SULF1;ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENST00000521946.5_1_8:70505207-70554528:+|nuORF;ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.27880859375 2 478.276575 954.538597 0.48645 0.00023266 0.5209 0.00024913 1.0073 0.00048179 478.27710730008806 60.955 0.31222 60.955 60.811 61.123 0 22 12 2 0 0 0 0.34999 1 33979 33979 14.838 0 1 1316300 70788 9841;4947 47337 48363 82324 82324 0.0595093821170849 VLNKAKSHI 9 Unmodified _VLNKAKSHI_ 0 0 0 nc|ENSG00000146857|Q7Z7C7|STRA8;ENSG00000146857|ENST00000662584|STRA8 nc|ENSG00000146857|Q7Z7C7|STRA8 nc|ENSG00000146857|Q7Z7C7|STRA8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 505.740478515625 2 505.311284 1008.60801 0.36767 0.00018579 -2.8081 -0.001419 -2.4405 -0.0012332 505.310763742054 78.606 0.87632 72.431 72.073 72.949 -6.1757 111 52 3 0 0 0 0.19613 1 51448 51448 12.532 0 1 30477000 70789 5804 47338 48364 82325 82325 0.1040544195111579 VLNKSKLVL 9 Unmodified _VLNKSKLVL_ 0 0 0 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 REV__nc|ENSG00000145868|Q6PIJ6-2|FBXO38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3395080566406 2 507.33951 1012.66447 1.0829 0.00054942 -0.39264 -0.0001992 0.6903 0.00035022 507.33913673500194 96.086 0.14069 89.91 89.833 89.974 -6.1757 12 8 2 0 0 0 0.36964 1 63681 63681 13.906 0 1 10870000 + 70790 20798 47339 48365 82326 82326 0.15864069787801327 VLNLPLIV 8 Unmodified _VLNLPLIV_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7987976074219 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 5.1369 1 5.0594 4.5594 5.5594 -0.07749 0 0 0 0.97444 1 2536 2536 0.79363 0 1 + 70791 17602 47340 48366 82327 82327 0.1347332432200119 VLNLPLIV 8 Unmodified _VLNLPLIV_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7984924316406 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 5.907 1 5.8295 5.3295 6.3295 -0.07749 0 0 0 0.97444 1 2915 2915 0.79363 0 1 + 70792 17602 47340 48366 82328 82328 0.1347332432200119 VLNLPLIV 8 Unmodified _VLNLPLIV_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.7987670898438 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 1.0118 1 0.99121 0.49121 1.4912 -0.020623 0 0 0 0.97444 1 519 519 0.79363 0 1 + 70793 17602 47340 48366 82329 82329 0.1347332432200119 VLNLRTQRDF 10 Unmodified _VLNLRTQRDF_ 0 0 0 nc|ENSG00000118733|Q96PB7-6|OLFM3;nc|ENSG00000118733|Q96PB7-4|OLFM3;nc|ENSG00000118733|Q96PB7-2|OLFM3;nc|ENSG00000118733|Q96PB7-5|OLFM3;ENSG00000118733|ENST00000370103|OLFM3;nc|ENSG00000118733|Q96PB7|OLFM3 nc|ENSG00000118733|Q96PB7-6|OLFM3 nc|ENSG00000118733|Q96PB7-6|OLFM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3536376953125 2 631.354211 1260.69387 NaN NaN NaN NaN NaN NaN NaN 77.33 1 76.847 76.347 77.347 -0.4826 0 0 0 0.96627 1 42334 42334 4.3292 0 1 70794 3391 47341 48367 82330 82330 0.07394982065989097 VLNQPYCT 8 Unmodified _VLNQPYCT_ 0 0 0 REV__ENSG00000166840|ENST00000532726|GLYATL1 REV__ENSG00000166840|ENST00000532726|GLYATL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.2257995605469 2 469.226028 936.437503 NaN NaN NaN NaN NaN NaN NaN 19.157 1 19.165 18.665 19.665 0.0078487 0 0 0 0.97444 1 9735 9735 0.79363 0 1 + 70795 22157 47342 48368 82331 82331 -0.033258367626672225 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8512573242188 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 106.88 1 100.71 100.21 101.21 -6.1757 0 0 0 0.85798 1 71524 71524 0.52476 0 1 70796 1241 47343 48369 82332 82332 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8507690429688 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 107.41 1 101.23 100.73 101.73 -6.1757 0 0 0 0.85798 1 71841 71841 0.52476 0 1 70797 1241 47343 48369 82333 82333 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8516235351562 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 107.58 1 101.41 100.91 101.91 -6.1757 0 0 0 0.85798 1 71948 71948 0.52476 0 1 70798 1241 47343 48369 82334 82334 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8515014648438 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 107.76 1 101.58 101.08 102.08 -6.1757 0 0 0 0.85798 1 72052 72052 0.52476 0 1 70799 1241 47343 48369 82335 82335 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8511962890625 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.28 1 102.1 101.6 102.6 -6.1757 0 0 0 0.85798 1 72373 72373 0.52476 0 1 70800 1241 47343 48369 82336 82336 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8511352539062 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.63 1 102.46 101.96 102.96 -6.1757 0 0 0 0.85798 1 72596 72596 0.52476 0 1 70801 1241 47343 48369 82337 82337 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8513793945312 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.82 1 102.64 102.14 103.14 -6.1757 0 0 0 0.85798 1 72707 72707 0.52476 0 1 70802 1241 47343 48369 82338 82338 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8510131835938 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 108.99 1 102.81 102.31 103.31 -6.1757 0 0 0 0.85798 1 72813 72813 0.52476 0 1 70803 1241 47343 48369 82339 82339 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.8512573242188 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 109.16 1 102.98 102.48 103.48 -6.1757 0 0 0 0.85798 1 72918 72918 0.52476 0 1 70804 1241 47343 48369 82340 82340 0.14626294256208894 VLNRAFKKL 9 Unmodified _VLNRAFKKL_ 0 0 0 nc|ENSG00000078269|O15056-3|SYNJ2;nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 nc|ENSG00000078269|O15056-3|SYNJ2 MSMS AL20221201_MKP_PDAC_01 4 544.851318359375 2 544.850576 1087.6866 NaN NaN NaN NaN NaN NaN NaN 109.69 1 103.52 103.02 104.02 -6.1757 0 0 0 0.85798 1 73242 73242 0.52476 0 1 70805 1241 47343 48369 82341 82341 0.14626294256208894 VLPAGLVLEF 10 Unmodified _VLPAGLVLEF_ 0 0 0 ENST00000435682.1_1_2:21912159-21933190:-|nuORF ENST00000435682.1_1_2:21912159-21933190:-|nuORF ENST00000435682.1_1_2:21912159-21933190:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.3192138671875 2 529.318243 1056.62193 2.0281 0.0010735 -0.64146 -0.00033954 1.3866 0.00073396 529.3180311792918 94.684 0.30576 94.698 94.568 94.874 0.014252 17 11 2 0 0 0 0.57332 1 52643 52643 12.532 4.6214 1 2082100 70806 13317 47344 48370 82342 82342 0.09588674659562457 VLPARYFYI 9 Unmodified _VLPARYFYI_ 0 0 0 ENST00000460338.5_1_13:103443606-103451020:-|nuORF;ENSG00000134901|ENST00000376004|POGLUT2 ENST00000460338.5_1_13:103443606-103451020:-|nuORF ENST00000460338.5_1_13:103443606-103451020:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3245239257812 2 571.32386 1140.63317 NaN NaN NaN NaN NaN NaN NaN 72.405 1 72.447 71.947 72.947 0.041725 0 0 0 0.39118 1 39870 39870 21.747 5.8995 1 70807 4652 47345 48371 82343 82343 0.06847496753721316 VLPDADTLLHF 11 Unmodified _VLPDADTLLHF_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.3377075195312 2 620.832246 1239.64994 0.5244 0.00032557 0.69732 0.00043292 1.2217 0.00075849 620.8324098973794 83.848 0.31292 83.349 83.172 83.485 -0.49961 31 12 4 0 0 0 0.62014 2 45849 45849;45951 18.146 12.414 1 1806200 70808 4658 47346 48372 82344;82345 82344 0.039699528490018565 VLPDADTLLHF 11 Unmodified _VLPDADTLLHF_ 0 0 0 nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC nc|ENSG00000134982|P25054-2|APC nc|ENSG00000134982|P25054-2|APC MSMS AL20221201_MKP_PDAC_01 4 620.83251953125 2 620.832246 1239.64994 NaN NaN NaN NaN NaN NaN NaN 97.154 1 90.978 90.478 91.478 -6.1757 0 0 0 0.13892 1 64390 64390 65.235 41.214 1 70809 4658 47346 48372 82346 82346 0.039699528490018565 VLPDMFFSF 9 Unmodified _VLPDMFFSF_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000562567.6_1_16:68267161-68268061:-|nuORF;ENST00000563159.5_1_16:68267455-68268061:-|nuORF;ENST00000564465.1_1_16:68267455-68269590:-|nuORF;ENST00000569964.5_1_16:68267161-68269644:-|nuORF;ENST00000251366.7_1_16:68266662-68269948:-|nuORF ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7696533203125 2 551.767529 1101.5205 0.64037 0.00035333 -0.15851 -8.746E-05 0.48186 0.00026587 551.7676008306138 101.78 0.11975 95.6 95.524 95.644 -6.1757 21 9 3 0 0 0 0.095405 1 68302 68302 34.102 21.571 1 101690000 70810 2100 47347 48373 82347 82347 -0.0261952003463648 VLPDTVVIY 9 Unmodified _VLPDTVVIY_ 0 0 0 REV__ENSG00000146385|ENST00000275200|TAAR8 REV__ENSG00000146385|ENST00000275200|TAAR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7942199707031 2 509.794601 1017.57465 0.26427 0.00013473 -0.81762 -0.00041682 -0.55334 -0.00028209 509.7940846829191 85.215 0.34634 84.713 84.505 84.852 -0.5015 45 18 3 0 0 0 0.28047 1 46566 46566 18.135 1.1927 1 5691700 + 70811 20830 47348 48374 82348 82348 0.06656395388574765 VLPDVDDML 9 Unmodified _VLPDVDDML_ 0 0 0 REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF REV__ENST00000405257.1_1_6:4703010-4703685:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7493286132812 2 508.752075 1015.4896 0.71466 0.00036358 -4.2379 -0.002156 -3.5232 -0.0017925 508.7492272823565 60.057 0.50583 60.057 59.773 60.279 0 42 22 3 0 0 0 0.087258 1 33453 33453 36.044 7.5574 1 5037600 + 70812 26644 47349 48375 82349 82349 -0.01752718139539411 VLPEMDLLDI 10 Unmodified _VLPEMDLLDI_ 0 0 0 REV__ENST00000583517.1_1_17:26370242-26374944:+|nuORF REV__ENST00000583517.1_1_17:26370242-26374944:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.5429992675781 3 386.542264 1156.60496 1.406 0.00054349 -0.66971 -0.00025887 0.73633 0.00028462 386.5419781740548 19.527 0.77615 16.871 16.66 17.436 -2.6564 219 58 6 0 0 0 0.40046 3 10262 10262;10372;10482 21.59 16.566 1 1192200000 + 70813 29080 47350 48376 82350;82351;82352 82350 0.032923859914490095 VLPESLPVL 9 Unmodified _VLPESLPVL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7985229492188 2 483.797143 965.579734 NaN NaN NaN NaN NaN NaN NaN 84.606 1 84.606 84.106 85.106 0 0 0 0 0.7243 1 46901 46901 8.5933 0.68312 1 70814 5888 47351 48377 82353 82353 0.09556699251186274 VLPESLPVL 9 Unmodified _VLPESLPVL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 966.5845947265625 1 966.58701 965.579734 0.40457 0.00039106 -2.165 -0.0020927 -1.7605 -0.0017016 966.5860152826245 85.216 0.44666 84.714 84.388 84.835 -0.5015 38 22 2 0 0 0 0.052168 1 46616 46616 44.407 0 1 1460500 70815 5888 47351 48377 82354 82354 0.09556699251186274 VLPESLPVL 9 Unmodified _VLPESLPVL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.797119140625 2 483.797143 965.579734 NaN NaN NaN NaN NaN NaN NaN 84.941 1 84.439 83.939 84.939 -0.5015 0 0 0 0.18911 1 46478 46478 32.117 1.8922 1 70816 5888 47351 48377 82355 82355 0.09556699251186274 VLPESLPVL 9 Unmodified _VLPESLPVL_ 0 0 0 nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6;ENST00000456660.1_1_7:53929927-53930191:+|nuORF nc|ENSG00000147874|Q7Z4H7-3|HAUS6 nc|ENSG00000147874|Q7Z4H7-3|HAUS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.2984924316406 2 483.797143 965.579734 0.43509 0.00021049 -0.3612 -0.00017475 0.073888 3.5747E-05 483.7969334270044 92.92 0.73352 86.744 86.315 87.049 -6.1757 85 47 2 0 0 0 0.013472 3 61298 61298;61423;61559 70.716 26.309 1 25151000 70817 5888 47351 48377 82356;82357;82358 82356 0.09556699251186274 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2696533203125 2 516.269084 1030.52362 0.37401 0.00019309 0.37632 0.00019428 0.75033 0.00038737 516.7707189341968 52.651 0.27296 52.217 52.083 52.356 -0.43367 25 13 2 0 0 0 0.047196 1 28451 28451 46.021 19.68 1 3865200 70818 8560 47352 48378 82359 82359 0.009574911343634085 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2687377929688 2 516.269084 1030.52362 0.76988 0.00039746 -0.73041 -0.00037709 0.039468 2.0376E-05 516.2688026691442 52.318 0.67199 52.259 51.854 52.526 -0.058918 89 32 4 0 0 0 0.024882 2 28299 28299;28400 58.679 35.943 1 41208000 70819 8560 47352 48378 82360;82361 82360 0.009574911343634085 VLPGHFNTF 9 Unmodified _VLPGHFNTF_ 0 0 0 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 ENSG00000176055|ENST00000316610|MBLAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2694702148438 2 516.269084 1030.52362 0.3393 0.00017517 0.21037 0.00010861 0.54967 0.00028378 516.2691774490695 58.078 0.68156 52.051 51.804 52.486 -6.0275 84 37 3 0 0 0 0.013041 3 37118 37118;37254;37386 71.922 18.089 1 93365000 70820 8560 47352 48378 82362;82363;82364 82362 0.009574911343634085 VLPHKKVPEI 10 Unmodified _VLPHKKVPEI_ 0 0 0 REV__ENSG00000151388|ENST00000504830|ADAMTS12 REV__ENSG00000151388|ENST00000504830|ADAMTS12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3638305664062 2 580.363516 1158.71248 1.5735 0.00091318 -0.46884 -0.0002721 1.1046 0.00064108 580.3629560173089 108.18 0.074165 102.01 101.95 102.02 -6.1757 24 15 2 0 0 0 0.72196 1 72304 72304 0.45834 0 1 1469100 + 70821 21065 47353 48379 82365 82365 0.13947143707832765 VLPHLPPNL 9 Unmodified _VLPHLPPNL_ 0 0 0 ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF ENST00000525598.1_1_11:118982915-118984090:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.3037414550781 2 500.302927 998.591301 NaN NaN NaN NaN NaN NaN NaN 79.941 1 73.765 73.265 74.265 -6.1757 0 0 0 0.40995 1 52423 52423 19.439 5.9311 1 70822 14800 47354 48380 82366 82366 0.09194941065175044 VLPHVKLS 8 Unmodified _VLPHVKLS_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.7843627929688 2 446.78437 891.554188 1.714 0.00076578 -0.82149 -0.00036703 0.89248 0.00039875 446.7837809039235 108.82 0.088242 102.64 102.6 102.69 -6.1757 15 11 2 0 0 0 0.80975 1 72727 72727 0.79363 0 1 2170700 + 70823 19657 47355 48381 82367 82367 0.10407269519407691 VLPHVKLS 8 Unmodified _VLPHVKLS_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MSMS AL20221201_MKP_PDAC_01 4 446.7850646972656 2 446.78437 891.554188 NaN NaN NaN NaN NaN NaN NaN 107.23 1 101.05 100.55 101.55 -6.1757 0 0 0 0.97444 1 71733 71733 0.79363 0 1 + 70824 19657 47355 48381 82368 82368 0.10407269519407691 VLPHVKLS 8 Unmodified _VLPHVKLS_ 0 0 0 REV__nc|ENSG00000129219|O14939-4|PLD2 REV__nc|ENSG00000129219|O14939-4|PLD2 MSMS AL20221201_MKP_PDAC_01 4 446.7835998535156 2 446.78437 891.554188 NaN NaN NaN NaN NaN NaN NaN 108.28 1 102.11 101.61 102.61 -6.1757 0 0 0 0.97444 1 72376 72376 0.79363 0 1 + 70825 19657 47355 48381 82369 82369 0.10407269519407691 VLPIRVHTI 9 Unmodified _VLPIRVHTI_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3378295898438 2 524.337301 1046.66005 0.69777 0.00036587 -0.39408 -0.00020663 0.30369 0.00015923 524.3371283695753 46.227 0.27052 46.194 46.059 46.329 -0.033417 32 12 3 0 0 0 0.0085164 1 24852 24852 99.799 21.65 1 14522000 70826 7813 47356 48382 82370 82370 0.13858605364907817 VLPIRVHTI 9 Unmodified _VLPIRVHTI_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.3375244140625 2 524.337301 1046.66005 0.86871 0.0004555 -0.59501 -0.00031199 0.2737 0.00014351 524.3369300007948 51.434 0.33996 45.785 45.605 45.945 -5.649 34 20 2 0 0 0 0.025842 2 32332 32279;32332 57.722 17.228 1 73207000 70827 7813 47356 48382 82371;82372 82372 0.13858605364907817 VLPKCKHEF 9 Carbamidomethyl (C) _VLPKC(Carbamidomethyl (C))KHEF_ VLPKC(1)KHEF VLPKC(42)KHEF 0 1 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.5422973632812 3 386.54271 1156.6063 -0.54483 -0.0002106 -0.15656 -6.0518E-05 -0.70139 -0.00027112 386.5427117320378 18.028 0.12354 18.042 17.988 18.112 0.013865 89 25 4 0 0 0 0.060956 1 8999 8999 42.312 20.722 1 25753000 70828 7082 47357 48383 82373 82373 691 0.03426064870859591 VLPKCKHEF 9 Carbamidomethyl (C) _VLPKC(Carbamidomethyl (C))KHEF_ VLPKC(1)KHEF VLPKC(64)KHEF 0 1 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.8106689453125 2 579.310426 1156.6063 1.0308 0.00059717 -1.231 -0.00071314 -0.2002 -0.00011598 579.3098278224654 19.528 0.34501 16.871 16.713 17.058 -2.6564 109 31 4 0 0 0 0.01958 1 10286 10286 63.961 31.655 1 71549000 70829 7082 47357 48383 82374 82374 691 0.03426064870859591 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.8991088867188 3 351.898822 1052.67464 0.16434 5.783E-05 2.2308 0.000785 2.3951 0.00084283 351.8991092060164 53.026 0.41592 52.963 52.761 53.177 -0.063423 74 20 5 0 0 0 0.21643 2 28797 28693;28797 21.537 12.792 1 13581000 70830 13666 47358 48384 82375;82376 82376 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3456420898438 2 527.344595 1052.67464 0.25666 0.00013535 0.63322 0.00033393 0.88988 0.00046927 527.3450568594687 53.078 0.33234 53.015 52.804 53.137 -0.063419 40 16 3 0 0 0 0.10247 1 28722 28722 36.044 12.896 1 4768400 70831 13666 47358 48384 82377 82377 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2338562011719 3 351.898822 1052.67464 1.707 0.00060068 -0.0014254 -5.0158E-07 1.7055 0.00060018 351.898874009198 57.591 0.32758 51.563 51.39 51.717 -6.0275 27 17 2 0 0 0 0.2324 1 36808 36808 20.415 1.0526 1 25182000 70832 13666 47358 48384 82378 82378 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.344970703125 2 527.344595 1052.67464 1.0501 0.00055377 -0.55194 -0.00029106 0.49816 0.0002627 527.3442582038826 57.632 0.22236 51.605 51.443 51.666 -6.0275 18 11 2 0 0 0 0.2324 1 36862 36862 28.487 15.955 1 12768000 70833 13666 47358 48384 82379 82379 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8993225097656 3 351.898822 1052.67464 0.87909 0.00030935 0.32099 0.00011296 1.2001 0.00042231 351.89893450144393 85.007 1.1266 78.831 77.91 79.037 -6.1757 89 65 2 0 0 0 0.21643 4 55905 55499;55780;55905;56037 21.537 20.415 1 28936000 70834 13666 47358 48384 82380;82381;82382;82383 82382 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3445434570312 2 527.344595 1052.67464 0.25199 0.00013289 -0.24009 -0.00012661 0.011897 6.274E-06 527.3443341308297 84.725 0.95487 78.549 78.068 79.023 -6.1757 72 55 2 0 0 0 0.2324 2 55593 55593;55765 28.487 28.487 1 14107000 70835 13666 47358 48384 82384;82385 82384 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8997802734375 3 351.898822 1052.67464 NaN NaN NaN NaN NaN NaN NaN 84.174 1 77.998 77.498 78.498 -6.1757 0 0 0 0.36957 1 55369 55369 21.537 9.2963 1 70836 13666 47358 48384 82386 82386 0.1504067751304774 VLPKKGWLL 9 Unmodified _VLPKKGWLL_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 351.8992004394531 3 351.898822 1052.67464 NaN NaN NaN NaN NaN NaN NaN 84.542 1 78.366 77.866 78.866 -6.1757 0 0 0 0.39118 1 55625 55625 20.415 6.7997 1 70837 13666 47358 48384 82387 82387 0.1504067751304774 VLPKKGWLLFF 11 Unmodified _VLPKKGWLLFF_ 0 0 0 ENST00000461838.5_1_13:28014569-28024229:-|nuORF;ENST00000493719.5_1_13:28014569-28024213:-|nuORF;ENST00000381120.7_1_13:28014569-28024670:-|nuORF;ENST00000484342.2_1_13:28014569-28024692:-|nuORF;ENST00000464753.1_1_13:28014569-28024306:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF ENST00000461838.5_1_13:28014569-28024229:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2796020507812 3 449.944431 1346.81146 1.3252 0.00059625 0.074914 3.3707E-05 1.4001 0.00062996 450.2788913412407 100.3 0.15697 94.12 94.03 94.187 -6.1757 21 9 3 0 0 0 0.71259 1 67035 67035 3.0723 0.44103 1 36636000 70838 13666 47359 48385 82388 82388 0.15193166672725056 VLPKKLHSMK 10 Unmodified _VLPKKLHSMK_ 0 0 0 REV__ENSG00000147082|ENST00000376042|CCNB3 REV__ENSG00000147082|ENST00000376042|CCNB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2455444335938 3 394.246005 1179.71618 NaN NaN NaN NaN NaN NaN NaN 96.903 1 96.903 96.403 97.403 0 0 0 0 1.0061 1 53548 53548 0 0 1 + 70839 20863 47360 48386 82389 82389 0.13351490210015982 VLPKLYVKL 9 Unmodified _VLPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.242431640625 3 358.242477 1071.7056 0.23217 8.3172E-05 0.077601 2.78E-05 0.30977 0.00011097 358.24245680100495 59.336 0.64117 59.283 59.073 59.714 -0.053059 103 32 5 0 0 0 0.042911 2 32368 32267;32368 36.506 14.969 1 427600000 70840 9994 47361 48387 82390;82391 82391 0.17261830827260383 VLPKLYVKL 9 Unmodified _VLPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.8603515625 2 536.860078 1071.7056 0.32989 0.0001771 -0.26619 -0.00014291 0.063701 3.4198E-05 536.8598878095836 59.336 0.36684 59.283 59.093 59.46 -0.053062 67 18 5 0 0 0 0.013041 2 32274 32274;32379 71.922 25.901 1 148100000 70841 9994 47361 48387 82392;82393 82392 0.17261830827260383 VLPKLYVKL 9 Unmodified _VLPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2428283691406 3 358.242477 1071.7056 0.93575 0.00033523 0.28516 0.00010216 1.2209 0.00043738 358.24252804043675 84.841 1.1804 78.665 77.777 78.957 -6.1757 261 67 5 0 0 0 0.031062 6 55719 55335;55462;55585;55719;55839;55974 49.554 27.964 1 686450000 70842 9994 47361 48387 82394;82395;82396;82397;82398;82399 82397 0.17261830827260383 VLPKLYVKL 9 Unmodified _VLPKLYVKL_ 0 0 0 nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF nc|ENSG00000196933|Q5JNZ5|RPS26P11 nc|ENSG00000196933|Q5JNZ5|RPS26P11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.823486328125 2 536.860078 1071.7056 0.15115 8.1147E-05 -0.11349 -6.0926E-05 0.037665 2.0221E-05 536.8599876674509 84.794 0.95998 78.618 77.964 78.924 -6.1757 186 55 4 0 0 0 0.1325 1 55948 55948 32.305 10.559 1 227480000 70843 9994 47361 48387 82400 82400 0.17261830827260383 VLPKQGMYI 9 Unmodified _VLPKQGMYI_ 0 0 0 ENST00000605265.1_1_10:112661227-112661341:-|nuORF ENST00000605265.1_1_10:112661227-112661341:-|nuORF ENST00000605265.1_1_10:112661227-112661341:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7969970703125 2 524.79662 1047.57869 0.40655 0.00021336 -0.23329 -0.00012243 0.17327 9.0929E-05 524.7965716573129 84.455 0.29502 83.955 83.797 84.092 -0.49961 22 13 2 0 0 0 0.53557 1 46208 46208 4.756 0 1 442550 70844 15844 47362 48388 82401 82401 0.05680161610621326 VLPKQGPLF 9 Unmodified _VLPKQGPLF_ 0 0 0 nc|ENSG00000214413|A8MTZ0-2|BBIP1;ENSG00000214413|ENST00000448814|BBIP1 nc|ENSG00000214413|A8MTZ0-2|BBIP1 nc|ENSG00000214413|A8MTZ0-2|BBIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.80517578125 2 499.805303 997.596052 0.1113 5.5629E-05 0.44771 0.00022377 0.55901 0.0002794 499.8053703311372 53.205 0.37936 53.142 53.002 53.381 -0.063423 53 18 4 0 0 0 0.078417 2 28825 28825;28928 38.151 16.405 1 7687200 70845 10491 47363 48389 82402;82403 82402 0.09715825207933904 VLPKQGPLF 9 Unmodified _VLPKQGPLF_ 0 0 0 nc|ENSG00000214413|A8MTZ0-2|BBIP1;ENSG00000214413|ENST00000448814|BBIP1 nc|ENSG00000214413|A8MTZ0-2|BBIP1 nc|ENSG00000214413|A8MTZ0-2|BBIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8061218261719 2 499.805303 997.596052 1.5797 0.00078952 -0.44213 -0.00022098 1.1375 0.00056854 499.80503484435525 58.802 0.46545 52.728 52.421 52.886 -6.0745 63 25 3 0 0 0 0.019979 2 37695 37559;37695 63.563 21.468 1 30132000 70846 10491 47363 48389 82404;82405 82405 0.09715825207933904 VLPKYFKHN 9 Unmodified _VLPKYFKHN_ 0 0 0 nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1 nc|ENSG00000185122|Q00613-2|HSF1 nc|ENSG00000185122|Q00613-2|HSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3265991210938 2 573.326934 1144.63931 0.29846 0.00017112 0.20446 0.00011722 0.50292 0.00028834 573.3271165416826 61.556 0.25613 61.523 61.394 61.65 -0.032787 28 12 3 0 0 0 0.2001 1 33589 33589 23.148 0.41214 1 8905300 70847 9335 47364 48390 82406 82406 0.07278014985240588 VLPLLTVLL 9 Unmodified _VLPLLTVLL_ 0 0 0 REV__ENST00000556751.5_2_14:101014389-101014500:-|nuORF REV__ENST00000556751.5_2_14:101014389-101014500:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 490.841552734375 2 490.841354 979.668155 NaN NaN NaN NaN NaN NaN NaN 106.26 1 100.09 99.586 100.59 -6.1757 0 0 0 0.8622 1 71137 71137 0 0 1 + 70848 28781 47365 48391 82407 82407 0.17750739561643059 VLPLMLPSF 9 Oxidation (M) _VLPLM(Oxidation (M))LPSF_ VLPLM(1)LPSF VLPLM(74)LPSF 0 0 1 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.794677734375 2 516.793546 1031.57254 NaN NaN NaN NaN NaN NaN NaN 99.303 1 99.275 98.775 99.775 -0.028282 0 0 0 0.0233 1 55153 55153 74.396 27.475 1 70849 8725 47366 48392 82408 82408 1476 0.058016433791181043 VLPLMLPSF 9 Oxidation (M) _VLPLM(Oxidation (M))LPSF_ VLPLM(1)LPSF VLPLM(86)LPSF 0 0 1 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2962036132812 2 516.793546 1031.57254 1.4544 0.00075163 -2.1389 -0.0011054 -0.68449 -0.00035374 516.793050244337 100.79 0.16103 94.61 94.556 94.717 -6.1757 26 10 4 0 0 0 0.0089973 1 67485 67485 86.121 26.326 1 82890000 70850 8725 47366 48392 82409 82409 1476 0.058016433791181043 VLPLMLPSF 9 Unmodified _VLPLMLPSF_ 0 0 0 ENSG00000178038|ENST00000318962|ALS2CL;ENST00000383742.7_2_3:46712476-46718839:-|nuORF;nc|ENSG00000178038|Q60I27-3|ALS2CL;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENST00000486301.5_1_3:46712476-46716264:-|nuORF;ENST00000434140.5_2_3:46712476-46717187:-|nuORF;nc|ENSG00000178038|Q60I27-6|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7955627441406 2 508.796089 1015.57763 0.59889 0.00030471 0.32223 0.00016395 0.92112 0.00046866 508.79655646831884 101.65 0.10988 95.476 95.414 95.524 -6.1757 19 5 4 0 0 0 0.0084408 1 68216 68216 98.807 31.772 1 58620000 70851 8725 47366 48393 82410 82410 0.07045947241738304 VLPNRPFGLF 10 Unmodified _VLPNRPFGLF_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.8359375 2 580.334759 1158.65496 0.7224 0.00041923 -0.70108 -0.00040686 0.021323 1.2374E-05 580.33431157743 62.529 0.46854 62.507 62.284 62.752 -0.021614 96 24 5 0 0 0 0.36296 2 34082 34082;34310 28.487 12.364 1 324890000 70852 300 47367 48394 82411;82412 82411 0.08198301502261529 VLPNRPFGLF 10 Unmodified _VLPNRPFGLF_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3340454101562 2 580.334759 1158.65496 0.65071 0.00037763 0.1636 9.4943E-05 0.81431 0.00047257 580.3349268609179 67.616 0.67582 61.441 60.981 61.657 -6.1757 86 37 3 0 0 0 0.30444 2 44217 44081;44217 39.957 18.211 1 107610000 70853 300 47367 48394 82413;82414 82414 0.08198301502261529 VLPNRPFGLF 10 Unmodified _VLPNRPFGLF_ 0 0 0 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 ENSG00000005187|ENST00000289416|ACSM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3355102539062 2 580.334759 1158.65496 0.97235 0.00056429 0.064032 3.716E-05 1.0364 0.00060145 580.3347435546026 69.108 1.0466 62.932 62.348 63.394 -6.1757 193 57 4 0 0 0 0.28276 2 44812 44812;45300 36.044 17.898 1 509460000 70854 300 47367 48394 82415;82416 82415 0.08198301502261529 VLPNSDFLVHF 11 Unmodified _VLPNSDFLVHF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3416748046875 2 644.340238 1286.66592 1.7829 0.0011488 -0.17214 -0.00011091 1.6108 0.0010379 644.3403246704581 81.588 0.35194 81.648 81.48 81.832 0.059929 25 13 3 0 0 0 0.10976 1 45164 45164 51.63 33.257 1 2300000 70855 9669 47368 48395 82417 82417 0.03405659085865409 VLPNSDFLVHF 11 Unmodified _VLPNSDFLVHF_ 0 0 0 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.341064453125 2 644.340238 1286.66592 1.1082 0.00071406 0.80271 0.00051722 1.9109 0.0012313 644.3406775429227 95.846 0.52042 89.67 89.535 90.056 -6.1757 43 31 2 0 0 0 0.0111 1 63503 63503 92.653 69.995 1 8854300 70856 9669 47368 48395 82418 82418 0.03405659085865409 VLPNTALHL 9 Unmodified _VLPNTALHL_ 0 0 0 ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2922973632812 2 489.292559 976.570566 NaN NaN NaN NaN NaN NaN NaN 56.41 1 55.924 55.424 56.424 -0.48554 0 0 0 0.10545 1 30630 30630 42.095 20.348 1 70857 471 47369 48396 82419 82419 0.0813435068552053 VLPPCPSL 8 Unmodified _VLPPCPSL_ 0 0 0 ENST00000399683.7_1_20:3734467-3734644:-|nuORF REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF REV__ENST00000573674.1_1_17:4936254-4937771:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2324829101562 2 413.230582 824.446611 -0.38643 -0.00015969 4.1319 0.0017074 3.7454 0.0015477 413.2329024287986 23.11 0.2468 23.11 22.955 23.202 0 21 12 2 0 0 0 0.77907 1 11764 11764 10.183 0 1 320280 70858 19858 47370 48397 82420 82420 0.02736556593674777 VLPPRNFWELL 11 Unmodified _VLPPRNFWELL_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-2|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.8939819335938 2 692.392805 1382.77106 0.82224 0.00056931 -1.5747 -0.0010903 -0.75247 -0.000521 692.3920118111406 100.21 0.18928 94.039 93.898 94.088 -6.1757 27 11 3 0 0 0 0.012228 1 66936 66936 65.474 15.919 1 40971000 70859 4756 47371 48398 82421 82421 0.09498200282314428 VLPPTQTAL 9 Unmodified _VLPPTQTAL_ 0 0 0 REV__ENST00000234590.8_1_1:8921306-8921417:-|nuORF REV__ENST00000234590.8_1_1:8921306-8921417:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.283935546875 2 470.279118 938.543683 0.27644 0.00013 -0.16262 -7.6479E-05 0.11381 5.3524E-05 470.27855605098614 69.995 0.69901 69.995 69.797 70.496 0 147 64 3 0 0 0 0.46577 1 39251 39251 9.3474 0 1 83078000 + 70860 24828 47372 48399 82422 82422 0.0719524207431732 VLPQATFQY 9 Unmodified _VLPQATFQY_ 0 0 0 REV__ENSG00000141200|ENST00000268919|KIF2B REV__ENSG00000141200|ENST00000268919|KIF2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7822875976562 2 533.782025 1065.5495 0.52229 0.00027879 -3.0152 -0.0016095 -2.4929 -0.0013307 533.7818423902456 72.077 0.46357 71.601 71.415 71.878 -0.47609 44 19 3 0 0 0 0.30562 1 39516 39516 16.942 0 1 10224000 + 70861 20521 47373 48400 82423 82423 0.019343405859899576 VLPQATFQY 9 Unmodified _VLPQATFQY_ 0 0 0 REV__ENSG00000141200|ENST00000268919|KIF2B REV__ENSG00000141200|ENST00000268919|KIF2B MSMS AL20221201_MKP_PDAC_01 4 533.7835083007812 2 533.782025 1065.5495 NaN NaN NaN NaN NaN NaN NaN 79.306 1 73.13 72.63 73.63 -6.1757 0 0 0 0.23581 1 51957 51957 28.487 3.0875 1 + 70862 20521 47373 48400 82424 82424 0.019343405859899576 VLPQRFPQF 9 Unmodified _VLPQRFPQF_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.31884765625 2 566.319109 1130.62366 0.56746 0.00032136 0.30005 0.00016992 0.8675 0.00049128 566.319321140265 60.632 0.33018 60.589 60.415 60.745 -0.04351 44 16 3 0 0 0 0.025842 2 33026 33026;33125 74.423 53.969 1 30713000 70863 16057 47374 48401 82425;82426 82425 0.06357728468174173 VLPQRFPQF 9 Unmodified _VLPQRFPQF_ 0 0 0 nc|ENSG00000080802|O95628-6|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 nc|ENSG00000080802|O95628-6|CNOT4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.693603515625 2 566.319109 1130.62366 0.94267 0.00053385 0.1533 8.6819E-05 1.096 0.00062067 566.3192057588346 66.106 0.60629 59.931 59.709 60.315 -6.1757 58 34 2 0 0 0 0.039788 1 42993 42993 48.346 37.522 1 22021000 70864 16057 47374 48401 82427 82427 0.06357728468174173 VLPREKIL 8 Unmodified _VLPREKIL_ 0 0 0 REV__nc|ENSG00000119242|Q53HC0-2|CCDC92 REV__nc|ENSG00000119242|Q53HC0-2|CCDC92 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.3190307617188 2 484.318577 966.622602 0.24013 0.0001163 -0.50737 -0.00024573 -0.26725 -0.00012943 484.3182346308597 72.78 0.24434 72.822 72.7 72.944 0.041725 20 11 2 0 0 0 0.6895 1 40088 40088 18.135 0 1 2557700 + 70865 19184 47375 48402 82428 82428 0.13795514099274442 VLPRKSLQL 9 Unmodified _VLPRKSLQL_ 0 0 0 REV__ENSG00000278685|ENST00000615129|IQCA1L REV__ENSG00000278685|ENST00000615129|IQCA1L MSMS AL20221201_MKP_PDAC_01 4 527.34423828125 2 527.342584 1052.67061 NaN NaN NaN NaN NaN NaN NaN 84.985 1 78.809 78.309 79.309 -6.1757 0 0 0 0.29524 1 55945 55945 25.399 2.663 1 + 70866 24674 47376 48403 82429 82429 0.1463858801932929 VLPRKSLQL 9 Unmodified _VLPRKSLQL_ 0 0 0 REV__ENSG00000278685|ENST00000615129|IQCA1L REV__ENSG00000278685|ENST00000615129|IQCA1L MSMS AL20221201_MKP_PDAC_01 4 527.3455200195312 2 527.342584 1052.67061 NaN NaN NaN NaN NaN NaN NaN 85.169 1 78.994 78.494 79.494 -6.1757 0 0 0 0.18753 1 56076 56076 32.305 3.2239 1 + 70867 24674 47376 48403 82430 82430 0.1463858801932929 VLPSELNWEF 10 Unmodified _VLPSELNWEF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.8757019042969 3 411.876523 1232.60774 -0.61723 -0.00025422 -1.5751 -0.00064875 -2.1923 -0.00090297 411.8763638318428 17.804 0.1193 17.804 17.74 17.859 0 49 23 3 0 0 0 0.65023 1 8791 8791 8.4443 3.0416 1 1847800 + 70868 20387 47377 48404 82431 82431 0.0007397744061563571 VLPSELNWEF 10 Unmodified _VLPSELNWEF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 411.876523 1232.60774 -0.61723 -0.00025422 -1.5751 -0.00064875 -2.1923 -0.00090297 411.8763638318428 17.804 0.1193 17.804 17.74 17.859 0 -0.029763 0.00074579 NaN 8.4443 49 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1847800 + 70869 20387 47377 48404 0.0007397744061563571 VLPSELNWEF 10 Unmodified _VLPSELNWEF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 411.876523 1232.60774 -0.54639 -0.00022504 -2.1778 -0.00089699 -2.7242 -0.001122 411.8758575520265 17.834 0.099609 17.848 17.799 17.899 0.013865 0.014435 1.076E-06 NaN 8.4443 43 16 4 NaN NaN NaN NaN 0 NaN NaN 0 2871100 + 70870 20387 47377 48404 0.0007397744061563571 VLPSELNWEF 10 Unmodified _VLPSELNWEF_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.876523 1232.60774 -0.11541 -4.7537E-05 -2.823 -0.0011627 -2.9384 -0.0012103 411.87572378348585 17.844 0.11076 17.849 17.774 17.885 0.0050564 0.015328 -0.00079617 NaN 8.4443 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 991320 + 70871 20387 47377 48404 0.0007397744061563571 VLPSHPPH 8 Unmodified _VLPSHPPH_ 0 0 0 REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 442.2440795898438 2 442.24287 882.471186 NaN NaN NaN NaN NaN NaN NaN 16.71 1 14.153 13.653 14.653 -2.557 0 0 0 0.93066 1 8676 8676 14.582 5.2343 1 + 70872 19226 47378 48405 82432 82432 0.025249527914184 VLPSVLNKF 9 Unmodified _VLPSVLNKF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.8108215332031 2 508.810585 1015.60662 1.0848 0.00055195 -1.0833 -0.00055118 0.0015097 7.6814E-07 508.81025460129496 64.292 0.39275 64.281 64.117 64.509 -0.010529 56 19 4 0 0 0 0.008678 2 35164 35164;35273 88.904 60.417 1 24610000 70873 10002 47379 48406 82433;82434 82433 0.09943807862373433 VLPSVLNKF 9 Unmodified _VLPSVLNKF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MSMS AL20221201_MKP_PDAC_01 4 508.756591796875 2 508.810585 1015.60662 NaN NaN NaN NaN NaN NaN NaN 72.434 1 66.259 65.759 66.759 -6.1757 0 0 0 0.047623 1 47390 47390 58.679 36.932 1 70874 10002 47379 48406 82435 82435 0.09943807862373433 VLPSVLNKF 9 Unmodified _VLPSVLNKF_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MSMS AL20221201_MKP_PDAC_01 4 508.8116760253906 2 508.810585 1015.60662 NaN NaN NaN NaN NaN NaN NaN 72.747 1 66.571 66.071 67.071 -6.1757 0 0 0 0.028486 1 47588 47588 68.081 37.856 1 70875 10002 47379 48406 82436 82436 0.09943807862373433 VLPTGDLLL 9 Unmodified _VLPTGDLLL_ 0 0 0 nc|ENSG00000185033|Q9NPR2-2|SEMA4B;ENSG00000185033|ENST00000411539|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B nc|ENSG00000185033|Q9NPR2-2|SEMA4B MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7898254394531 2 470.789318 939.564084 0.82788 0.00038976 0.11836 5.5725E-05 0.94624 0.00044548 470.7893141023015 84.026 0.44593 77.851 77.587 78.033 -6.1757 43 23 2 0 0 0 0.052168 1 55173 55173 44.407 0 1 13673000 70876 9321 47380 48407 82437 82437 0.09188412734147278 VLPTGGRPLF 10 Unmodified _VLPTGGRPLF_ 0 0 0 nc|ENSG00000012171|Q13214-2|SEMA3B;ENSG00000012171|ENST00000616701|SEMA3B;ENST00000419007.5_1_3:50311763-50312407:+|nuORF;ENST00000456210.5_1_3:50311877-50313205:+|nuORF nc|ENSG00000012171|Q13214-2|SEMA3B nc|ENSG00000012171|Q13214-2|SEMA3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.81396484375 2 528.813659 1055.61277 0.73571 0.00038906 -0.17642 -9.3295E-05 0.55929 0.00029576 528.8137356039175 57.27 0.34029 57.204 57.057 57.397 -0.066036 25 16 2 0 0 0 0.35903 1 31181 31181 24.021 8.1734 1 2817600 70877 457 47381 48408 82438 82438 0.08718326093890028 VLPTRAPDFP 10 Unmodified _VLPTRAPDFP_ 0 0 0 REV__nc|ENSG00000050820|P56945-5|BCAR1 REV__nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5422973632812 3 371.541475 1111.60259 0.90315 0.00033556 1.4589 0.00054204 2.362 0.0008776 371.54193858791484 46.339 0.53684 46.305 46.059 46.596 -0.033417 48 25 2 0 0 0 0.71177 1 24900 24900 1.5923 0 1 15272000 + 70878 17263 47382 48409 82439 82439 0.051257183686630015 VLPVLLPILF 10 Unmodified _VLPVLLPILF_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.3817138671875 2 562.378103 1122.74165 NaN NaN NaN NaN NaN NaN NaN 76.641 1 76.641 76.141 77.141 0 0 0 0 1.0019 1 42609 42609 0.45834 0 1 + 70879 19183 47383 48410 82440 82440 0.1851928800413134 VLPVLLPILF 10 Unmodified _VLPVLLPILF_ 0 0 0 REV__ENSG00000119227|ENST00000412723|PIGZ REV__ENSG00000119227|ENST00000412723|PIGZ MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.37939453125 2 562.378103 1122.74165 NaN NaN NaN NaN NaN NaN NaN 77.536 1 77.053 76.553 77.553 -0.4826 0 0 0 1.0019 1 42448 42448 0.45834 0 1 + 70880 19183 47383 48410 82441 82441 0.1851928800413134 VLPVPCEL 8 Unmodified _VLPVPCEL_ 0 0 0 REV__ENST00000367456.5_1_6:149699376-149699529:+|nuORF REV__ENST00000367456.5_1_6:149699376-149699529:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 869.479248046875 1 869.480102 868.472826 1.1233 0.00097673 -1.0308 -0.00089628 0.092525 8.0449E-05 869.4786098560298 101.12 0.085381 94.943 94.889 94.974 -6.1757 7 4 2 0 0 0 0.37649 1 67788 67788 46.921 12.734 1 12885000 + 70881 25985 47384 48411 82442 82442 0.03332825765153302 VLPVRYFYL 9 Unmodified _VLPVRYFYL_ 0 0 0 ENSG00000178202|ENST00000323468|POGLUT3 ENSG00000178202|ENST00000323468|POGLUT3 ENSG00000178202|ENST00000323468|POGLUT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.3414916992188 2 585.33951 1168.66447 1.6433 0.0009619 0.79073 0.00046285 2.4341 0.0014247 585.3400297055781 81.351 0.34653 81.411 81.237 81.584 0.059929 33 12 3 0 0 0 0.013323 1 44973 44973 71.134 38.348 1 12698000 70882 8735 47385 48412 82443 82443 0.08688069787785935 VLPVRYFYL 9 Unmodified _VLPVRYFYL_ 0 0 0 ENSG00000178202|ENST00000323468|POGLUT3 ENSG00000178202|ENST00000323468|POGLUT3 ENSG00000178202|ENST00000323468|POGLUT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3389282226562 2 585.33951 1168.66447 1.2685 0.00074253 -0.34789 -0.00020364 0.92064 0.00053889 585.3392963840818 98.076 0.16829 91.9 91.8 91.968 -6.1757 32 10 4 0 0 0 0.026094 1 64984 64984 57.471 24.686 1 147060000 70883 8735 47385 48412 82444 82444 0.08688069787785935 VLPYLVPKL 9 Unmodified _VLPYLVPKL_ 0 0 0 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 ENSG00000089154|ENST00000300648|GCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.33837890625 2 521.338978 1040.6634 0.035684 1.8603E-05 -0.65602 -0.00034201 -0.62034 -0.00032341 521.3385818643683 77.266 0.24437 77.316 77.173 77.418 0.050102 18 9 2 0 0 0 0.042911 1 42644 42644 48.346 31.404 1 2762400 70884 1517 47386 48413 82445 82445 0.14469855418906263 VLPYPLLL 8 Unmodified _VLPYPLLL_ 0 0 0 REV__ENST00000466696.1_1_3:87302513-87302969:+|nuORF REV__ENST00000466696.1_1_3:87302513-87302969:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.9102478027344 2 464.299322 926.584091 -0.23074 -0.00010713 0.027095 1.258E-05 -0.20364 -9.455E-05 464.2993262625664 56.879 0.24728 56.394 56.205 56.453 -0.48554 22 11 2 0 0 0 8.7369 1 30867 30867 32.454 0 1 1959600 + 70885 27413 47387 48414 82446 82446 0.1178620846475269 VLQDIQVML 9 Unmodified _VLQDIQVML_ 0 0 0 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 ENSG00000100297|ENST00000216122|MCM5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.8008422851562 2 529.79936 1057.58417 0.9904 0.00052472 -0.85058 -0.00045063 0.13983 7.4081E-05 529.7993307268777 89.903 0.68565 83.727 83.47 84.156 -6.1757 57 38 2 0 0 0 0.010818 3 59390 59257;59390;59525 78.149 10.333 1 7954400 70886 1787 47388 48415 82447;82448;82449 82448 0.057678404024500196 VLQDLDTR 8 Unmodified _VLQDLDTR_ 0 0 0 ENST00000596099.1_1_19:17392905-17393816:+|nuORF;nc|ENSG00000160117|Q8NAG6-1|ANKLE1;ENSG00000160117|ENST00000404085|ANKLE1;ENST00000404085.5_1_19:17392508-17397358:+|nuORF ENST00000596099.1_1_19:17392905-17393816:+|nuORF ENST00000596099.1_1_19:17392905-17393816:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 480.2627563476562 2 480.261456 958.50836 NaN NaN NaN NaN NaN NaN NaN 82.64 1 76.464 75.964 76.964 -6.1757 0 0 0 0.75749 1 54292 54292 25.399 4.8184 1 70887 6688 47389 48416 82450 82450 0.027445795465041556 VLQDTVEQL 9 Unmodified _VLQDTVEQL_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.1898193359375 2 522.782222 1043.54989 0.43895 0.00022948 -0.039176 -2.048E-05 0.39977 0.00020899 522.7821936499254 50.429 0.35085 50.429 50.209 50.56 0 30 15 3 0 0 0 0.1474 1 27751 27751 28.487 9.2299 1 6028800 70888 7561 47390 48417 82451 82451 0.029857155152058112 VLQEKVPEI 9 Unmodified _VLQEKVPEI_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.810791015625 2 527.810782 1053.60701 0.94768 0.0005002 -0.090537 -4.7786E-05 0.85715 0.00045241 527.8105241480984 52.979 0.34046 47.175 47.009 47.35 -5.8042 23 18 2 0 0 0 0.022653 1 33419 33419 74.2 30.427 1 15875000 70889 8857;16422 47391 48418 82452 82452 0.08235182791554507 VLQEKVPEI 9 Unmodified _VLQEKVPEI_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 527.810782 1053.60701 0.31878 0.00016825 -1.8189 -0.00096001 -1.5001 -0.00079176 527.8096553247693 46.957 0.29095 46.957 46.858 47.149 0 -0.10894 -0.001218 NaN 74.2 21 13 3 NaN NaN NaN NaN 0 NaN NaN 0 5348200 70890 8857;16422 47391 48418 0.08235182791554507 VLQEWKMCL 9 Unmodified _VLQEWKMCL_ 0 0 0 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 ENSG00000198028|ENST00000301480|ZNF560 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8641967773438 3 383.864684 1148.57222 NaN NaN NaN NaN NaN NaN NaN 20.447 1 20.476 19.976 20.976 0.028357 0 0 0 0.85737 1 10350 10350 0.26902 0 1 70891 10039 47392 48419 82453 82453 0.0038790038761362666 VLQFQILYL 9 Unmodified _VLQFQILYL_ 0 0 0 ENST00000591877.1_1_17:57886214-57889064:+|nuORF ENST00000591877.1_1_17:57886214-57889064:+|nuORF ENST00000591877.1_1_17:57886214-57889064:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3137817382812 2 568.839342 1135.66413 0.67873 0.00038609 -0.11426 -6.4996E-05 0.56447 0.00032109 568.8396549612421 83.743 0.24148 83.244 83.124 83.366 -0.4987 17 9 2 0 0 0 0.20727 1 45868 45868 7.9102 0 1 280890 70892 15711 47393 48420 82454 82454 0.10172650067943323 VLQGAVPTV 9 Unmodified _VLQGAVPTV_ 0 0 0 nc|ENSG00000146463|Q5VZL5-3|ZMYM4;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.26611328125 2 442.26601 882.517468 0.2221 9.8228E-05 0.043086 1.9055E-05 0.26519 0.00011728 442.2659989993376 51.089 0.2607 50.675 50.498 50.758 -0.41351 19 12 2 0 0 0 0.28047 1 27558 27558 18.135 3.5533 1 916050 70893 5782 47394 48421 82455 82455 0.07150972902843478 VLQGEPGL 8 Unmodified _VLQGEPGL_ 0 0 0 REV__ENSG00000156689|ENST00000287275|GLYATL2 REV__ENSG00000156689|ENST00000287275|GLYATL2 MSMS AL20221201_MKP_PDAC_01 4 406.7295227050781 2 406.729261 811.443968 NaN NaN NaN NaN NaN NaN NaN 63.179 1 57.004 56.504 57.504 -6.1757 0 0 0 0.88073 1 40815 40815 19.439 0 1 + 70894 21341 47395 48422 82456 82456 0.030704244603612096 VLQGKLAEV 9 Unmodified _VLQGKLAEV_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7928466796875 2 478.792392 955.570232 0.23895 0.00011441 1.6041 0.00076802 1.843 0.00088243 478.7932623377241 37.941 0.22229 37.941 37.806 38.028 0 20 10 3 0 0 0 0.039985 1 20208 20208 49.933 3.0121 1 2240700 70895 4022 47396 48423 82457 82457 0.09066930965650499 VLQGKLAEV 9 Unmodified _VLQGKLAEV_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;ENST00000476350.1_1_1:39768622-39838291:+|nuORF nc|ENSG00000127603|Q9UPN3|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.792236328125 2 478.792392 955.570232 0.59469 0.00028473 -0.32551 -0.00015585 0.26918 0.00012888 478.7927327248836 56.827 0.23822 50.85 50.703 50.941 -5.9769 20 13 2 0 0 0 0.023481 1 36299 36299 60.074 1.3951 1 15711000 70896 4022 47396 48423 82458 82458 0.09066930965650499 VLQGPPCRCGP 11 Unmodified _VLQGPPCRCGP_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.8676147460938 3 376.188049 1125.54232 0.1254 4.7174E-05 3.7 0.0013919 3.8254 0.0014391 376.52355277113026 22.006 0.16683 22.02 21.896 22.063 0.013796 9 6 2 0 0 0 0.304 1 11260 11260 1.4551 0 1 426820 + 70897 29889 47397 48424 82459 82459 -0.015430385577246852 VLQKESQTQTE 11 Unmodified _VLQKESQTQTE_ 0 0 0 REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF REV__ENST00000446198.5_1_7:131189072-131193853:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8886413574219 3 430.88938 1289.64631 NaN NaN NaN NaN NaN NaN NaN 92.029 1 85.853 85.353 86.353 -6.1757 0 0 0 0.94002 1 60850 60850 1.0136 0 1 + 70898 19616 47398 48425 82460 82460 0.013072382844711683 VLQKPKVKI 9 Unmodified _VLQKPKVKI_ 0 0 0 REV__ENSG00000055957|ENST00000273283|ITIH1 REV__ENSG00000055957|ENST00000273283|ITIH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.244384765625 3 351.57786 1051.71175 0.12114 4.259E-05 -1.2464 -0.00043819 -1.1252 -0.0003956 351.5773858509192 26.827 0.086311 26.855 26.804 26.891 0.028664 5 3 2 0 0 0 0.2188 1 13939 13939 1.0715 0 1 2638800 + 70899 17293 47399 48426 82461 82461 0.1879634905878902 VLQLDRPCP 9 Unmodified _VLQLDRPCP_ 0 0 0 REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF REV__ENST00000534624.5_1_11:122931950-122932924:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8087768554688 2 520.781502 1039.54845 0.039104 2.0365E-05 0.19871 0.00010348 0.23781 0.00012385 520.7818688161916 72.716 0.28377 72.758 72.617 72.901 0.041733 22 13 2 0 0 0 0.20139 1 40044 40044 10.824 0 1 2469300 + 70900 28504 47400 48427 82462 82462 0.03025802945421674 VLQLSNLS 8 Unmodified _VLQLSNLS_ 0 0 0 REV__nc|ENSG00000115970|Q6YHU6-2|THADA REV__nc|ENSG00000115970|Q6YHU6-2|THADA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2553405761719 2 437.255643 872.496732 NaN NaN NaN NaN NaN NaN NaN 42.613 1 42.604 42.104 43.104 -0.0088196 0 0 0 0.97444 1 22821 22821 3.9444 0 1 + 70901 19017 47401 48428 82463 82463 0.055383825231729134 VLQLTSYA 8 Unmodified _VLQLTSYA_ 0 0 0 REV__ENSG00000106628|ENST00000610533|POLD2 REV__ENSG00000106628|ENST00000610533|POLD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 894.4909057617188 1 894.49311 893.485833 0.61598 0.00055099 0.4724 0.00042256 1.0884 0.00097355 894.4932214833582 71.938 0.30403 65.763 65.556 65.86 -6.1757 27 17 2 0 0 0 0.26159 1 47129 47129 60.39 6.814 1 18704000 + 70902 18522 47402 48429 82464 82464 0.03482980148896786 VLQNDFHCT 9 Unmodified _VLQNDFHCT_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.4992065429688 3 359.49917 1075.47568 0.039737 1.4285E-05 -0.55502 -0.00019953 -0.51528 -0.00018524 359.4990219805195 62.615 0.35641 62.615 62.444 62.8 0 52 16 4 0 0 0 0.51218 1 34874 34874 4.1895 0 1 9501400 + 70903 18428 47403 48430 82465 82465 -0.05903950848005479 VLQNQGREM 9 Unmodified _VLQNQGREM_ 0 0 0 nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1 nc|ENSG00000059573|P54886-2|ALDH18A1 nc|ENSG00000059573|P54886-2|ALDH18A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.8514099121094 3 358.850202 1073.52878 0.085837 3.0803E-05 2.852 0.0010235 2.9379 0.0010543 358.85157724398084 80.489 0.19818 80.489 80.393 80.592 0 13 8 2 0 0 0 0.57757 1 44718 44718 2.7352 0 1 410260 70904 815 47404 48431 82466 82466 -0.0050457306531370705 VLQPLQQRF 9 Unmodified _VLQPLQQRF_ 0 0 0 ENSG00000132953|ENST00000255305|XPO4 ENSG00000132953|ENST00000255305|XPO4 ENSG00000132953|ENST00000255305|XPO4 MSMS AL20221201_MKP_PDAC_01 4 376.8895263671875 3 376.888986 1127.64513 NaN NaN NaN NaN NaN NaN NaN 16.355 1 13.798 13.298 14.298 -2.557 0 0 0 0.7453 1 8467 8467 4.897 0.36815 1 70905 4469 47405 48432 82467 82467 0.08641113496878461 VLQQGNLSF 9 Unmodified _VLQQGNLSF_ 0 0 0 ENST00000591638.1_1_19:2085330-2085372:-|nuORF ENST00000591638.1_1_19:2085330-2085372:-|nuORF ENST00000591638.1_1_19:2085330-2085372:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2721252441406 2 503.271824 1004.5291 -0.20253 -0.00010193 0.34976 0.00017603 0.14724 7.4101E-05 503.2719065534322 51.363 0.27353 51.309 51.166 51.44 -0.053871 21 13 2 0 0 0 0.095405 1 27783 27783 34.102 2.8341 1 4774500 70906 15707 47406 48433 82468 82468 0.02701169926183411 VLQQIMLEQAA 11 Unmodified _VLQQIMLEQAA_ 0 0 0 REV__nc|ENSG00000131408|P55055-2|NR1H2 REV__nc|ENSG00000131408|P55055-2|NR1H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3394165039062 2 622.339381 1242.66421 0.46261 0.0002879 -0.51089 -0.00031795 -0.048285 -3.005E-05 622.3391815267984 85.995 0.3251 85.492 85.296 85.621 -0.50318 22 12 2 0 0 0 0.7187 1 47049 47049 2.4985 0 1 430100 + 70907 19790 47407 48434 82469 82469 0.05258282005638648 VLQQIMLEQAA 11 Unmodified _VLQQIMLEQAA_ 0 0 0 REV__nc|ENSG00000131408|P55055-2|NR1H2 REV__nc|ENSG00000131408|P55055-2|NR1H2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 622.339381 1242.66421 0.46261 0.0002879 -0.51089 -0.00031795 -0.048285 -3.005E-05 622.3391815267984 85.995 0.3251 85.492 85.296 85.621 -0.50318 0 0 NaN 2.4985 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 430100 + 70908 19790 47407 48434 0.05258282005638648 VLQRDLRKV 9 Unmodified _VLQRDLRKV_ 0 0 0 nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT;ENST00000376964.3_1_X:47517084-47518326:-|nuORF nc|ENSG00000126756|Q9UBK9-2|UXT nc|ENSG00000126756|Q9UBK9-2|UXT MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.1747131347656 3 376.240018 1125.69823 1.6533 0.00062203 1.1272 0.0004241 2.7805 0.0010461 376.2405117703247 21.722 0.25779 18.987 18.844 19.102 -2.7348 29 13 3 0 0 0 0.21642 1 11594 11594 4.1895 2.7344 1 3317300 70909 3964 47408 48435 82470 82470 0.14040491279547496 VLQRRKRILYR 11 Unmodified _VLQRRKRILYR_ 0 0 0 REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 750.9845581054688 2 750.983518 1499.95248 1.5664 0.0011763 0.85681 0.00064345 2.4232 0.0018198 750.9834414068793 104.22 0.086845 98.044 98.001 98.088 -6.1757 8 4 3 0 0 0 0.7453 1 69824 69824 0 0 1 11329000 + 70910 26645 47409 48436 82471 82471 0.2225055809872174 VLQRRKRILYR 11 Unmodified _VLQRRKRILYR_ 0 0 0 REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF REV__ENST00000405334.5_1_2:37368822-37374021:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 750.5008544921875 2 750.983518 1499.95248 NaN NaN NaN NaN NaN NaN NaN 109.81 1 103.64 103.14 104.14 -6.1757 0 0 0 0.9435 1 73315 73315 0 0 1 + 70911 26645 47409 48436 82472 82472 0.2225055809872174 VLQSHFSF 8 Unmodified _VLQSHFSF_ 0 0 0 REV__nc|ENSG00000090612|Q14587-2|ZNF268 REV__nc|ENSG00000090612|Q14587-2|ZNF268 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2785949707031 2 482.747985 963.481417 -0.082703 -3.9925E-05 -0.10244 -4.9451E-05 -0.18514 -8.9375E-05 482.7478476339881 55.901 0.23835 55.423 55.3 55.538 -0.47798 19 11 2 0 0 0 8.7369 1 30404 30404 13.508 0 1 1639100 + 70912 17865 47410 48437 82473 82473 -0.0017848427399940192 VLQTPPDIQ 9 Unmodified _VLQTPPDIQ_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant;ENST00000415664.2_21:10987833-11013471:-|nuORF KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7817993164062 2 505.779482 1009.54441 1.4227 0.00071956 1.0247 0.00051827 2.4474 0.0012378 505.77996451439327 46.79 0.28208 46.757 46.637 46.919 -0.033417 32 13 3 0 0 0 0.30202 1 25168 25168 17.113 0 1 11321000 70913 778 47411 48438 82474 82474 0.04002036723386482 VLQTPPDIQ 9 Unmodified _VLQTPPDIQ_ 0 0 0 KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant;ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.P3905Lfs*29|1|0.25|ENSG00000055609|chr7:152156303-152156303|G/-|frameshift_variant;KMT2C|p.L3290*|1|0.21|ENSG00000055609|chr7:152163709-152163709|G/-|frameshift_variant;ENST00000415664.2_21:10987833-11013471:-|nuORF KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant KMT2C|p.G4559Wfs*15|1|0.16|ENSG00000055609|chr7:152148252-152148253|-/A|frameshift_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 505.779482 1009.54441 1.4227 0.00071956 1.0247 0.00051827 2.4474 0.0012378 505.77996451439327 46.79 0.28208 46.757 46.637 46.919 -0.033417 0 0 NaN 17.113 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 11321000 70914 778 47411 48438 0.04002036723386482 VLQVSAEHLDR 11 Unmodified _VLQVSAEHLDR_ 0 0 0 ENST00000466622.1_1_7:5028799-5028985:+|nuORF ENST00000466622.1_1_7:5028799-5028985:+|nuORF ENST00000466622.1_1_7:5028799-5028985:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8465576171875 2 633.843676 1265.6728 0.42714 0.00027074 1.2653 0.000802 1.6924 0.0010727 633.8433919167353 69.41 0.24596 69.44 69.249 69.495 0.030914 23 14 2 0 0 0 0.33405 1 38092 38092 24.991 5.629 1 7484300 70915 13759 47412 48439 82475 82475 0.05058971966468562 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.3001098632812 2 523.30005 1044.58555 NaN NaN NaN NaN NaN NaN NaN 71.391 1 71.391 70.891 71.891 0 0 0 0 0.7453 1 39766 39766 7.9102 3.1541 1 70916 2503 47413 48440 82476 82476 0.06503797762843533 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.30078125 2 523.30005 1044.58555 0.4482 0.00023454 1.8683 0.00097768 2.3165 0.0012122 523.3010609185989 71.893 0.4982 71.417 71.073 71.572 -0.47609 36 19 2 0 0 0 0.019303 1 39312 39312 64.236 32.119 1 3889500 70917 2503 47413 48440 82477 82477 0.06503797762843533 VLQYVVPEV 9 Unmodified _VLQYVVPEV_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2610473632812 2 523.30005 1044.58555 1.3218 0.00069169 -0.25677 -0.00013437 1.065 0.00055732 523.2995204678475 79.723 0.42339 73.547 73.353 73.777 -6.1757 55 25 3 0 0 0 0.1325 1 52383 52383 19.257 0 1 27817000 70918 2503 47413 48440 82478 82478 0.06503797762843533 VLRAANWGI 9 Unmodified _VLRAANWGI_ 0 0 0 REV__ENST00000417396.2_1_5:64483922-64509924:-|nuORF REV__ENST00000417396.2_1_5:64483922-64509924:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7512817382812 2 500.290351 998.566149 0.17986 8.9983E-05 -2.2572 -0.0011293 -2.0773 -0.0010393 500.2892611847858 43.448 0.20432 43.448 43.341 43.545 0 16 9 3 0 0 0 0.209 1 23616 23616 3.9444 0 1 2313500 + 70919 26326 47414 48441 82479 82479 0.06680886262597596 VLRALPLV 8 Unmodified _VLRALPLV_ 0 0 0 REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8017578125 2 440.802563 879.590573 NaN NaN NaN NaN NaN NaN NaN 2.9717 1 2.9717 2.4717 3.4717 0 0 0 0 0.97444 1 1442 1442 0.79363 0 1 + 70920 28092 47415 48442 82480 82480 0.1459614641612461 VLRAPLHA 8 Unmodified _VLRAPLHA_ 0 0 0 REV__nc|ENSG00000161905|P16050-2|ALOX15 REV__nc|ENSG00000161905|P16050-2|ALOX15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7743225097656 2 438.774337 875.534121 NaN NaN NaN NaN NaN NaN NaN 13.973 1 13.981 13.481 14.481 0.0073986 0 0 0 0.97444 1 6910 6910 0 0 1 + 70921 21610 47416 48443 82481 82481 0.09137518579450443 VLREVDLL 8 Unmodified _VLREVDLL_ 0 0 0 ENSG00000158106|ENST00000289013|RHPN1;ENST00000522335.5_1_8:144462155-144464818:+|nuORF ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.77490234375 2 478.792392 955.570232 0.76039 0.00036407 0.56673 0.00027134 1.3271 0.00063541 478.79278951736393 43.183 0.32873 38.418 38.197 38.525 -4.7648 37 22 2 0 0 0 8.7369 1 26081 26081 21.747 0 1 14939000 70922 6565 47417 48444 82482 82482 0.09066930965661868 VLRGNVSLVL 10 Unmodified _VLRGNVSLVL_ 0 0 0 ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.2295227050781 3 357.229119 1068.66553 0.89547 0.00031989 0.11059 3.9508E-05 1.0061 0.0003594 357.2291112994424 23.895 0.54931 21.067 20.791 21.34 -2.8273 122 32 5 0 0 0 0.28721 1 12838 12838 28.234 0 1 259100000 70923 8059 47418 48445 82483 82483 0.13394284156697722 VLRGPRLVLT 10 Unmodified _VLRGPRLVLT_ 0 0 0 ENST00000571580.1_1_16:2983897-2986840:+|nuORF ENST00000571580.1_1_16:2983897-2986840:+|nuORF ENST00000571580.1_1_16:2983897-2986840:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.2484741210938 3 375.248514 1122.72371 NaN NaN NaN NaN NaN NaN NaN 101.88 1 101.88 101.38 102.38 0 0 0 0 1.0061 1 56193 56193 0 0 1 70924 15488 47419 48446 82484 82484 0.16725965801947495 VLRKKKHKR 9 Unmodified _VLRKKKHKR_ 0 0 0 REV__ENSG00000177954|ENST00000651669|RPS27 REV__ENSG00000177954|ENST00000651669|RPS27 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2522277832031 3 398.275286 1191.80403 NaN NaN NaN NaN NaN NaN NaN 89.524 1 89.524 89.024 90.024 0 0 0 0 0.8622 1 49534 49534 0 0 1 + 70925 23011 47420 48447 82485 82485 0.2157987191567372 VLRKKKKK 8 Unmodified _VLRKKKKK_ 0 0 0 ENSG00000155438|ENST00000285814|NIFK ENSG00000155438|ENST00000285814|NIFK ENSG00000155438|ENST00000285814|NIFK MULTI-MSMS AL20221201_MKP_PDAC_01 4 1027.74169921875 1 1027.74625 1026.73897 0.64207 0.00065989 -3.0562 -0.003141 -2.4142 -0.0024812 1027.7419956527299 72.803 0.1159 66.628 66.562 66.678 -6.1757 7 5 2 0 0 0 0.81107 1 47626 47626 0 0 1 13305000 70926 6388 47421 48448 82486 82486 0.22666877389815454 VLRLFLLPH 9 Unmodified _VLRLFLLPH_ 0 0 0 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.9062194824219 3 369.906088 1106.69644 0.046585 1.7232E-05 1.5168 0.00056109 1.5634 0.00057832 369.9065094823299 37.284 0.33649 37.284 37.138 37.475 0 41 17 3 0 0 0 0.61801 1 19922 19922 0.26902 0 1 15620000 70927 5985 47422 48449 82487 82487 0.14735482261608013 VLRLFLLPH 9 Unmodified _VLRLFLLPH_ 0 0 0 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.9069213867188 3 369.906088 1106.69644 0.26283 9.7221E-05 0.067685 2.5037E-05 0.33051 0.00012226 369.90641712760043 40.832 0.3233 40.83 40.752 41.075 -0.0017929 25 15 3 0 0 0 0.61801 1 21812 21812 0.26902 0 1 1856200 70928 5985 47422 48449 82488 82488 0.14735482261608013 VLRLHRLL 8 Unmodified _VLRLHRLL_ 0 0 0 REV__ENSG00000117139|ENST00000367265|KDM5B REV__ENSG00000117139|ENST00000367265|KDM5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.3458251953125 2 510.345461 1018.67637 1.3873 0.000708 -0.32563 -0.00016618 1.0617 0.00054182 510.345196423641 106.37 1.1381 100.2 99.727 100.87 -6.1757 339 192 2 0 0 0 0.80975 5 71056 71056;71157;71266;71380;71489 0.79363 0 1 13869000 + 70929 19086 47423 48450 82489;82490;82491;82492;82493 82489 0.1677773132164475 VLRLLRRAPP 10 Unmodified _VLRLLRRAPP_ 0 0 0 REV__nc|ENSG00000161270|O60500-2|NPHS1 REV__nc|ENSG00000161270|O60500-2|NPHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.8948974609375 2 595.895849 1189.77715 -0.74353 -0.00044307 -1.261 -0.00075142 -2.0045 -0.0011945 595.8950593290583 103.61 0.15308 103.56 103.49 103.64 -0.047928 10 5 2 0 0 0 0.72247 1 57554 57554 0.40072 0.40072 1 3158300 + 70930 21592 47424 48451 82494 82494 0.1898476330450194 VLRLQAACA 9 Unmodified _VLRLQAACA_ 0 0 0 ENST00000332231.9_2_11:1011900-1012230:+|nuORF ENST00000332231.9_2_11:1011900-1012230:+|nuORF ENST00000332231.9_2_11:1011900-1012230:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7724914550781 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 5.5965 1 5.5965 5.0965 6.0965 0 0 0 0 0.8622 1 2689 2689 0 0 1 70931 11869 47425 48452 82495 82495 0.05329837636566026 VLRLQAACA 9 Unmodified _VLRLQAACA_ 0 0 0 ENST00000332231.9_2_11:1011900-1012230:+|nuORF ENST00000332231.9_2_11:1011900-1012230:+|nuORF ENST00000332231.9_2_11:1011900-1012230:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7705993652344 2 472.770937 943.527321 NaN NaN NaN NaN NaN NaN NaN 13.17 1 13.122 12.622 13.622 -0.048298 0 0 0 0.8622 1 6390 6390 0 0 1 70932 11869 47425 48452 82496 82496 0.05329837636566026 VLRLQDLARKK 11 Unmodified _VLRLQDLARKK_ 0 0 0 REV__ENSG00000100065|ENST00000251973|CARD10 REV__ENSG00000100065|ENST00000251973|CARD10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.4297485351562 2 670.430253 1338.84595 NaN NaN NaN NaN NaN NaN NaN 104.07 1 104.02 103.52 104.52 -0.048737 0 0 0 0.94307 1 57784 57784 0.30703 0 1 + 70933 18008 47426 48453 82497 82497 0.1900838281351298 VLRMAPMQL 9 Unmodified _VLRMAPMQL_ 0 0 0 ENSG00000183246|ENST00000433039|RIMBP3C;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000275793|ENST00000619918|RIMBP3 ENSG00000183246|ENST00000433039|RIMBP3C ENSG00000183246|ENST00000433039|RIMBP3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7971801757812 2 529.796097 1057.57764 0.34478 0.00018267 -1.7168 -0.00090956 -1.372 -0.00072689 530.2956285030565 92.678 0.44662 92.221 91.971 92.417 -0.45741 51 20 4 0 0 0 0.48152 1 50590 50590 8.5933 1.8701 1 1661700 70934 9128 47427 48454 82498 82498 0.05115623970073102 VLRPPGTAL 9 Unmodified _VLRPPGTAL_ 0 0 0 ENSG00000198535|ENST00000355522|C2CD4A ENSG00000198535|ENST00000355522|C2CD4A ENSG00000198535|ENST00000355522|C2CD4A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.2870178222656 2 462.287277 922.560001 NaN NaN NaN NaN NaN NaN NaN 41.886 1 41.877 41.377 42.377 -0.0088196 0 0 0 0.059498 1 22409 22409 53.833 6.0841 1 70935 10103 47428 48455 82499 82499 0.09562368031083679 VLRQDRRF 8 Unmodified _VLRQDRRF_ 0 0 0 REV__ENSG00000059588|ENST00000040877|TARBP1 REV__ENSG00000059588|ENST00000040877|TARBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3167114257812 2 545.317432 1088.62031 0.29242 0.00015946 -0.89245 -0.00048667 -0.60004 -0.00032721 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.80975 1 43055 43055 0.79363 0 1 5672300 + 70936 17319 47429 48456 82500 82500 0.07954478414171717 VLRQGLIVL 9 Unmodified _VLRQGLIVL_ 0 0 0 REV__ENSG00000184459|ENST00000300399|BPIFC REV__ENSG00000184459|ENST00000300399|BPIFC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.8399658203125 2 505.839677 1009.6648 1.1417 0.00057752 0.011922 6.0308E-06 1.1536 0.00058355 505.8396471214976 49.742 0.27609 49.693 49.589 49.865 -0.048824 31 13 3 0 0 0 0.078417 1 26884 26884 38.151 4.0487 1 4819000 + 70937 23421 47430 48457 82501 82501 0.16035489507646616 VLRQRILKPKD 11 Unmodified _VLRQRILKPKD_ 0 0 0 nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MSMS AL20221201_MKP_PDAC_01 4 455.9609985351562 3 455.961144 1364.8616 NaN NaN NaN NaN NaN NaN NaN 12.878 1 10.396 9.896 10.896 -2.482 0 0 0 0.9435 1 6520 6520 0 0 1 70938 9499 47431 48458 82502 82502 0.19376669330563345 VLRRAIRKRR 10 Unmodified _VLRRAIRKRR_ 0 0 0 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 REV__nc|ENSG00000171320|Q56NI9-2|ESCO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.4498901367188 2 662.449646 1322.88474 NaN NaN NaN NaN NaN NaN NaN 103.98 1 103.94 103.44 104.44 -0.048737 0 0 0 1.0061 1 57740 57740 0 0 1 + 70939 22554 47432 48459 82503 82503 0.23621152958571656 VLRRKALA 8 Unmodified _VLRRKALA_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000543042.5_1_11:72091398-72145518:-|nuORF;ENST00000445069.4_1_11:72065347-72145518:-|nuORF nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.8164672851562 2 463.816536 925.618519 NaN NaN NaN NaN NaN NaN NaN 103.5 1 103.45 102.95 103.95 -0.047928 0 0 0 0.97444 1 57480 57480 0 0 1 70940 6836 47433 48460 82504 82504 0.15273469396208839 VLRRKALA 8 Unmodified _VLRRKALA_ 0 0 0 nc|ENSG00000162129|Q9H078-3|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000543042.5_1_11:72091398-72145518:-|nuORF;ENST00000445069.4_1_11:72065347-72145518:-|nuORF nc|ENSG00000162129|Q9H078-3|CLPB nc|ENSG00000162129|Q9H078-3|CLPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.6327514648438 1 926.625796 925.618519 1.5638 0.001449 -0.25922 -0.0002402 1.3046 0.0012088 926.6253524025382 103.54 0.14476 97.365 97.336 97.481 -6.1757 46 26 2 0 0 0 0.81107 1 69407 69407 0 0 1 5684300 70941 6836 47433 48460 82505 82505 0.15273469396208839 VLRRLLRQR 9 Unmodified _VLRRLLRQR_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.4048461914062 2 605.404373 1208.79419 -0.6217 -0.00037638 0.79327 0.00048025 0.17157 0.00010387 605.40470475026 105.08 0.055511 105.03 105 105.05 -0.048737 18 13 2 0 0 0 0.61381 1 58320 58320 0.52476 0 1 5696200 70942 12657 47434 48461 82506 82506 0.19814683910294661 VLRRLLRQR 9 Unmodified _VLRRLLRQR_ 0 0 0 ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF ENST00000391858.8_1_1:231473224-231473434:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.4056396484375 2 605.404373 1208.79419 1.1661 0.00070594 -0.018467 -1.118E-05 1.1476 0.00069476 605.4043245174413 105.09 0.15482 98.912 98.828 98.983 -6.1757 64 22 4 0 0 0 0.61381 1 70357 70357 0.52476 0 1 212380000 70943 12657 47434 48461 82507 82507 0.19814683910294661 VLRRLMLL 8 Unmodified _VLRRLMLL_ 0 0 0 ENST00000309983.4_1_6:18130894-18132387:-|nuORF ENST00000309983.4_1_6:18130894-18132387:-|nuORF ENST00000309983.4_1_6:18130894-18132387:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 507.3368530273438 2 507.336247 1012.65794 NaN NaN NaN NaN NaN NaN NaN 109.76 1 103.58 103.08 104.08 -6.1757 0 0 0 0.97444 1 73282 73282 0 0 1 70944 11670 47435 48462 82508 82508 0.1521185335542441 VLRRPVAPG 9 Unmodified _VLRRPVAPG_ 0 0 0 REV__ENST00000371370.7_1_1:54411767-54412118:+|nuORF REV__ENST00000371370.7_1_1:54411767-54412118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.8059997558594 2 482.806168 963.597784 0.83654 0.00040389 0.31134 0.00015032 1.1479 0.0005542 482.80573209291805 57.185 0.30213 57.119 56.937 57.239 -0.066036 22 14 2 0 0 0 0.3554 1 31100 31100 14.582 0 1 3054100 + 70945 26083 47436 48463 82509 82509 0.11452879016553652 VLRRPVLMIL 10 Unmodified _VLRRPVLMIL_ 0 0 0 ENST00000394735.5_1_4:106613284-106614531:-|nuORF ENST00000394735.5_1_4:106613284-106614531:-|nuORF ENST00000394735.5_1_4:106613284-106614531:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.3970336914062 2 605.396836 1208.77912 NaN NaN NaN NaN NaN NaN NaN 6.2146 1 6.2146 5.7146 6.7146 0 0 0 0 1.0061 1 2985 2985 0 0 1 70946 12746 47437 48464 82510 82510 0.18308055998090822 VLRRVPQLT 9 Unmodified _VLRRVPQLT_ 0 0 0 REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1 REV__nc|ENSG00000188026|Q5EBL4-2|RILPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2326049804688 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 90.879 1 90.879 90.379 91.379 0 0 0 0 0.86054 1 50268 50268 0.20686 0 1 + 70947 29861 47438 48465 82511 82511 0.139651062508392 VLRTICQQEWV 11 Unmodified _VLRTICQQEWV_ 0 0 0 nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L nc|ENSG00000144893|Q86YW9-4|MED12L MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2479553222656 3 458.911462 1373.71256 1.2149 0.00055754 -0.1581 -7.2554E-05 1.0568 0.00048498 459.24644263011083 21.016 0.31905 18.323 18.134 18.453 -2.693 25 17 2 0 0 0 0.631 1 11170 11170 9.7643 1.3199 1 4283300 70948 5656 47439 48466 82512 82512 0.04064775645520058 VLRWLRQL 8 Unmodified _VLRWLRQL_ 0 0 0 REV__ENST00000558966.5_1_15:44719997-44751301:+|nuORF REV__ENST00000558966.5_1_15:44719997-44751301:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2144775390625 2 542.342918 1082.67128 0.3214 0.00017431 -1.6591 -0.00089978 -1.3377 -0.00072547 542.3423899930958 83.215 0.2062 82.717 82.583 82.789 -0.49751 15 7 3 0 0 0 8.7369 1 45575 45575 5.7604 0 1 527450 + 70949 28809 47440 48467 82513 82513 0.13325427459017192 VLSDEDSDL 9 Unmodified _VLSDEDSDL_ 0 0 0 ENST00000528049.2_1_15:32791963-32792224:-|nuORF ENST00000528049.2_1_15:32791963-32792224:-|nuORF ENST00000528049.2_1_15:32791963-32792224:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7240600585938 2 496.724569 991.434586 NaN NaN NaN NaN NaN NaN NaN 68.335 1 67.854 67.354 68.354 -0.48071 0 0 0 0.7243 1 37347 37347 8.5933 1.304 1 70950 14848 47441 48468 82514 82514 -0.06147433406465552 VLSEEAVRAK 10 Unmodified _VLSEEAVRAK_ 0 0 0 ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72 ENSG00000112877|ENST00000264935|CEP72 ENSG00000112877|ENST00000264935|CEP72 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.553955078125 3 367.880267 1100.61897 -0.025876 -9.5193E-06 1.726 0.00063495 1.7001 0.00062543 368.2145932243293 33.307 0.35732 33.336 33.185 33.543 0.028934 46 15 4 0 0 0 0.23566 1 17622 17622 3.8763 0.28927 1 8104500 70951 2928 47442 48469 82515 82515 0.07268799534745085 VLSEKCLLL 9 Unmodified _VLSEKCLLL_ 0 0 0 REV__ENST00000244040.3_1_20:56934856-56935048:+|nuORF REV__ENST00000244040.3_1_20:56934856-56935048:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.3269348144531 2 509.304278 1016.594 2.0285 0.0010331 1.6645 0.00084773 3.693 0.0018809 509.3050081950291 81.864 0.65977 81.924 81.659 82.319 0.059929 49 26 3 0 0 0 0.21367 1 45231 45231 4.756 0 1 7225400 + 70952 24852 47443 48470 82516 82516 0.08637028407838443 VLSELLWQV 9 Unmodified _VLSELLWQV_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8143310546875 2 543.813325 1085.6121 2.1188 0.0011523 0.040935 2.2261E-05 2.1598 0.0011745 543.8132496920595 95.198 0.37439 95.203 95.03 95.404 0.004158 33 13 3 0 0 0 0.013472 2 52862 52862;52972 70.716 40.491 1 3252900 70953 3033;3790 47444 48471 82517;82518 82517 0.07271486654190085 VLSHLEDF 8 Unmodified _VLSHLEDF_ 0 0 0 ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP ENSG00000124688|ENST00000372171|MAD2L1BP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.2453308105469 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 77.002 1 76.522 76.022 77.022 -0.47945 0 0 0 0.9706 1 42157 42157 6.3541 0 1 70954 3810 47445 48472 82519 82519 -0.004902078564896328 VLSIAERTV 9 Unmodified _VLSIAERTV_ 0 0 0 REV__nc|ENSG00000160691|P29353-3|SHC1 REV__nc|ENSG00000160691|P29353-3|SHC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2951354980469 2 494.295299 986.576045 0.10314 5.098E-05 -0.31346 -0.00015494 -0.21032 -0.00010396 494.29505202600757 47.025 0.20913 47.025 46.962 47.171 0 14 9 2 0 0 0 0.07087 1 25769 25769 39.95 3.4435 1 2710200 + 70955 21557 47446 48473 82520 82520 0.08222029477326487 VLSIKHLP 8 Unmodified _VLSIKHLP_ 0 0 0 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 ENSG00000010292|ENST00000315579|NCAPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.7920227050781 2 453.792195 905.569838 -0.26308 -0.00011938 -0.55358 -0.00025121 -0.81666 -0.0003706 453.7920364587081 106.1 0.20844 106.05 105.94 106.15 -0.048103 13 7 2 0 0 0 0.80992 1 58826 58826 0.69038 0 1 3093000 70956 418 47447 48474 82521 82521 0.1132755603645137 VLSKNKIH 8 Unmodified _VLSKNKIH_ 0 0 0 ENST00000295206.6_1_2:119600274-119600430:-|nuORF ENST00000295206.6_1_2:119600274-119600430:-|nuORF ENST00000295206.6_1_2:119600274-119600430:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7935485839844 2 469.792727 937.5709 -0.18676 -8.7737E-05 0.93689 0.00044015 0.75014 0.00035241 469.7933946854122 21.838 0.22175 21.861 21.785 22.006 0.022896 12 9 2 0 0 0 0.77186 1 11114 11114 10.824 0 1 689180 70957 11487 47448 48475 82522 82522 0.09961770405368497 VLSKNKIH 8 Unmodified _VLSKNKIH_ 0 0 0 ENST00000295206.6_1_2:119600274-119600430:-|nuORF ENST00000295206.6_1_2:119600274-119600430:-|nuORF ENST00000295206.6_1_2:119600274-119600430:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7930297851562 2 469.792727 937.5709 0.13978 6.567E-05 0.65253 0.00030655 0.79231 0.00037222 469.79297326112214 23.873 0.40317 21.045 20.881 21.284 -2.8273 59 23 3 0 0 0 0.42423 2 13010 12893;13010 42.095 3.8303 1 15193000 70958 11487 47448 48475 82523;82524 82524 0.09961770405368497 VLSLAHLLHLY 11 Unmodified _VLSLAHLLHLY_ 0 0 0 REV__nc|ENSG00000185433|P58513|LINC00158 REV__nc|ENSG00000185433|P58513|LINC00158 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.923583984375 3 426.923807 1277.74959 0.40259 0.00017188 -0.30954 -0.00013215 0.093049 3.9725E-05 426.9235672283014 59.26 0.4073 59.207 58.992 59.399 -0.053062 59 20 4 0 0 0 0.60863 1 32239 32239 10.899 3.8619 1 33097000 + 70959 29852 47449 48476 82525 82525 0.12182815253618173 VLSLAHLLHLY 11 Unmodified _VLSLAHLLHLY_ 0 0 0 REV__nc|ENSG00000185433|P58513|LINC00158 REV__nc|ENSG00000185433|P58513|LINC00158 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8814697265625 2 639.882073 1277.74959 0.39846 0.00025497 0.066261 4.2399E-05 0.46472 0.00029737 639.8819475798068 59.237 0.23915 59.184 59.073 59.312 -0.053062 18 11 2 0 0 0 0.631 1 32265 32265 17.113 2.2746 1 8257000 + 70960 29852 47449 48476 82526 82526 0.12182815253618173 VLSLAHLLHLY 11 Unmodified _VLSLAHLLHLY_ 0 0 0 REV__nc|ENSG00000185433|P58513|LINC00158 REV__nc|ENSG00000185433|P58513|LINC00158 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.9239501953125 3 426.923807 1277.74959 0.74307 0.00031723 0.63034 0.00026911 1.3734 0.00058634 426.923730402574 85.775 0.65636 79.599 79.153 79.81 -6.1757 100 38 3 0 0 0 0.59643 1 56238 56238 11.518 1.2026 1 48682000 + 70961 29852 47449 48476 82527 82527 0.12182815253618173 VLSLLFLPW 9 Unmodified _VLSLLFLPW_ 0 0 0 ENST00000360820.6_1_12:100732381-100732429:+|nuORF ENST00000360820.6_1_12:100732381-100732429:+|nuORF ENST00000360820.6_1_12:100732381-100732429:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3302001953125 2 544.331153 1086.64775 NaN NaN NaN NaN NaN NaN NaN 100.23 1 100.19 99.691 100.69 -0.036301 0 0 0 0.84369 1 55671 55671 2.3027 0 1 70962 12172 47450 48477 82528 82528 0.10789568901827806 VLSNVEVTL 9 Unmodified _VLSNVEVTL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 973.5552368164062 1 973.556438 972.549162 0.16189 0.00015761 0.77037 0.00074999 0.93225 0.0009076 973.5573146981937 63.579 0.22664 63.579 63.482 63.709 0 18 9 3 0 0 0 0.0090948 1 35455 35455 85.272 31.439 1 2172800 70963 9907 47451 48478 82529 82529 0.06178920866148019 VLSNVEVTL 9 Unmodified _VLSNVEVTL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.2817993164062 2 487.281857 972.549162 0.71547 0.00034863 0.061519 2.9977E-05 0.77698 0.00037861 487.2818348467411 64.042 0.29182 63.557 63.447 63.739 -0.48512 32 14 3 0 0 0 0.024882 1 34921 34921 58.679 12.658 1 2983800 70964 9907 47451 48478 82530 82530 0.06178920866148019 VLSNVEVTL 9 Unmodified _VLSNVEVTL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 973.557861328125 1 973.556438 972.549162 0.48522 0.00047239 -0.10286 -0.00010014 0.38236 0.00037225 973.5566056678767 64.062 0.22335 63.577 63.473 63.696 -0.48513 14 10 2 0 0 0 0.022193 1 34941 34941 61.357 19.518 1 968470 70965 9907 47451 48478 82531 82531 0.06178920866148019 VLSNVEVTL 9 Unmodified _VLSNVEVTL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2825317382812 2 487.281857 972.549162 1.0804 0.00052647 -0.11741 -5.721E-05 0.963 0.00046925 487.2816343769144 70.942 0.40945 64.767 64.533 64.943 -6.1757 40 20 3 0 0 0 0.0090948 2 46439 46316;46439 85.272 6.2271 1 39428000 70966 9907 47451 48478 82532;82533 82533 0.06178920866148019 VLSPEYLWDQQ 11 Unmodified _VLSPEYLWDQQ_ 0 0 0 nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO nc|ENSG00000175164|P16442|ABO nc|ENSG00000175164|P16442|ABO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.3389282226562 2 689.337892 1376.66123 NaN NaN NaN NaN NaN NaN NaN 28.115 1 28.115 27.615 28.615 0 0 0 0 0.94293 1 14510 14510 1.1933 0.79263 1 70967 8487 47452 48479 82534 82534 -0.012032698475422876 VLSPLALTE 9 Unmodified _VLSPLALTE_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1;ENST00000466093.1_1_3:52437126-52437549:-|nuORF ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7789306640625 2 471.778951 941.543348 NaN NaN NaN NaN NaN NaN NaN 87.198 1 86.694 86.194 87.194 -0.50423 0 0 0 0.8622 1 47702 47702 0 0 1 70968 7096 47453 48480 82535 82535 0.07023822354449294 VLSPPAAH 8 Unmodified _VLSPPAAH_ 0 0 0 ENST00000541444.5_1_12:1902823-1906819:-|nuORF ENST00000541444.5_1_12:1902823-1906819:-|nuORF ENST00000541444.5_1_12:1902823-1906819:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.7934265136719 2 396.224146 790.433738 0.1261 4.9964E-05 0.039223 1.5541E-05 0.16532 6.5505E-05 396.2240442127376 70.182 0.19032 69.703 69.653 69.844 -0.47903 12 8 2 0 0 0 8.7369 1 38401 38401 9.3474 0 1 661590 70969 15047 47454 48481 82536 82536 0.030138615257897072 VLSPRYEIVI 10 Unmodified _VLSPRYEIVI_ 0 0 0 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 ENSG00000090339|ENST00000264832|ICAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.9040832519531 3 396.904413 1187.69141 -0.1772 -7.033E-05 -2.1679 -0.00086044 -2.3451 -0.00093077 396.90389633066644 29.916 0.27443 29.946 29.84 30.114 0.030106 26 10 3 0 0 0 0.6192 1 15633 15633 10.151 3.0488 1 2331000 70970 1554 47455 48482 82537 82537 0.10507133608325603 VLSQLPPPA 9 Unmodified _VLSQLPPPA_ 0 0 0 REV__ENST00000308660.5_1_5:126366123-126366321:-|nuORF REV__ENST00000308660.5_1_5:126366123-126366321:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.2738952636719 2 461.273835 920.533118 0.37776 0.00017425 0.60027 0.00027689 0.97803 0.00045114 461.27373399941854 78.313 0.97022 72.137 71.773 72.743 -6.1757 125 58 3 0 0 0 0.32871 1 51208 51208 15.847 0.078963 1 80832000 + 70971 25401 47456 48483 82538 82538 0.0696725941988916 VLSQLSKF 8 Unmodified _VLSQLSKF_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2701721191406 2 461.273835 920.533118 0.47977 0.00022131 -2.0264 -0.00093471 -1.5466 -0.0007134 461.27218994169255 69.995 0.51713 69.995 69.816 70.333 0 106 56 2 0 0 0 0.61462 1 38972 38972 24.674 2.9272 1 13141000 + 70972 25434 47457 48484 82539 82539 0.06967259419900529 VLSQLSKF 8 Unmodified _VLSQLSKF_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.2732238769531 2 461.273835 920.533118 0.10383 4.7893E-05 -0.34492 -0.0001591 -0.2411 -0.00011121 461.2733321782124 70.462 0.48695 69.985 69.821 70.308 -0.47736 83 39 3 0 0 0 0.61462 1 38498 38498 24.674 2.9272 1 19418000 + 70973 25434 47457 48484 82540 82540 0.06967259419900529 VLSQLSKF 8 Unmodified _VLSQLSKF_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.27392578125 2 461.273835 920.533118 0.37776 0.00017425 0.60027 0.00027689 0.97803 0.00045114 461.27373399941854 78.313 0.97022 72.137 71.773 72.743 -6.1757 125 58 3 0 0 0 0.6895 1 51335 51335 18.135 0 1 80832000 + 70974 25434 47457 48484 82541 82541 0.06967259419900529 VLSQLSKF 8 Unmodified _VLSQLSKF_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 461.273835 920.533118 0.10383 4.7893E-05 -0.34492 -0.0001591 -0.2411 -0.00011121 461.2733321782124 70.462 0.48695 69.985 69.821 70.308 -0.47736 -0.019215 0.00051536 NaN 24.674 83 39 3 NaN NaN NaN NaN 0 NaN NaN 0 19418000 + 70975 25434 47457 48484 0.06967259419900529 VLSQLSKF 8 Unmodified _VLSQLSKF_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 461.273835 920.533118 0.47257 0.00021799 -0.37718 -0.00017398 0.09539 4.4001E-05 461.2733985792662 70.002 0.27361 70.033 69.955 70.229 0.030922 0.028502 0.0004856 NaN 24.674 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2888700 + 70976 25434 47457 48484 0.06967259419900529 VLSSGAAPGSL 11 Unmodified _VLSSGAAPGSL_ 0 0 0 REV__ENST00000552810.5_1_12:88535679-88535862:-|nuORF REV__ENST00000552810.5_1_12:88535679-88535862:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7634582519531 2 479.763832 957.513111 0.38205 0.00018329 0.20786 9.9723E-05 0.58991 0.00028302 479.7637262774725 75.06 0.36342 75.06 74.912 75.275 0 52 23 3 0 0 0 0.63851 1 41699 41699 9.3831 0.78985 1 3091600 + 70977 28730 47458 48485 82542 82542 0.032654636892857525 VLSTEPGSF 9 Unmodified _VLSTEPGSF_ 0 0 0 ENSG00000150667|ENST00000350221|FSIP1 ENSG00000150667|ENST00000350221|FSIP1 ENSG00000150667|ENST00000350221|FSIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7361755371094 2 468.737283 935.460012 0.70107 0.00032862 -0.84202 -0.00039469 -0.14095 -6.6068E-05 468.7369878754156 57.656 0.33162 57.656 57.585 57.917 0 22 15 2 0 0 0 0.41742 1 32129 32129 11.64 2.2929 1 2257500 70978 6066 47459 48486 82543 82543 -0.010299140933739181 VLSVIFSQSY 10 Unmodified _VLSVIFSQSY_ 0 0 0 REV__ENSG00000164535|ENST00000297056|DAGLB REV__ENSG00000164535|ENST00000297056|DAGLB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.305908203125 2 571.808239 1141.60193 0.51016 0.00029172 -1.3666 -0.00078145 -0.85647 -0.00048973 571.8085126470045 63.226 0.49951 62.74 62.562 63.061 -0.48617 60 22 4 0 0 0 0.66569 1 34635 34635 6.7232 0 1 6596600 + 70979 21923 47460 48487 82544 82544 0.036788789289630586 VLSVLKHSLLS 11 Unmodified _VLSVLKHSLLS_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L;ENST00000510590.1_1_4:169298892-169300981:-|nuORF ENSG00000137628|ENST00000393743|DDX60;ENSG00000181381|ENST00000682922|DDX60L ENSG00000137628|ENST00000393743|DDX60 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2511596679688 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 69.963 1 69.963 69.463 70.463 0 0 0 0 0.94148 1 38979 38979 1.4551 0.26178 1 70980 4951;8967 47461 48488 82545 82545 0.14403109016711824 VLTDHSRLL 9 Unmodified _VLTDHSRLL_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8728637695312 3 351.873224 1052.59784 -0.47375 -0.0001667 0.57591 0.00020265 0.10216 3.5948E-05 351.8734057818778 18.985 0.26827 18.985 18.879 19.147 0 70 21 4 0 0 0 0.28023 1 9444 9444 12.873 1.9736 1 7205900 + 70981 18791 47462 48489 82546 82546 0.07364834225904815 VLTDHSRLL 9 Unmodified _VLTDHSRLL_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8738403320312 3 351.873224 1052.59784 1.8582 0.00065385 0.11613 4.0865E-05 1.9743 0.00069471 351.87330620813844 20.586 0.57838 17.893 17.627 18.205 -2.693 103 34 4 0 0 0 0.15471 1 10994 10994 20.581 2.7178 1 32670000 + 70982 18791 47462 48489 82547 82547 0.07364834225904815 VLTDHSRLL 9 Unmodified _VLTDHSRLL_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 351.873224 1052.59784 -0.47375 -0.0001667 0.57591 0.00020265 0.10216 3.5948E-05 351.8734057818778 18.985 0.26827 18.985 18.879 19.147 0 0.030005 -0.00038546 NaN 12.873 70 21 4 NaN NaN NaN NaN 0 NaN NaN 0 7205900 + 70983 18791 47462 48489 0.07364834225904815 VLTDHSRLL 9 Unmodified _VLTDHSRLL_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 351.873224 1052.59784 -0.59059 -0.00020781 1.6004 0.00056313 1.0098 0.00035532 351.87369160540953 18.902 0.14685 18.925 18.83 18.977 0.023106 -0.030005 0.000696 NaN 12.873 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 686410 + 70984 18791 47462 48489 0.07364834225904815 VLTERTSCSF 10 Unmodified _VLTERTSCSF_ 0 0 0 ENSG00000092607|ENST00000369429|TBX15 ENSG00000092607|ENST00000369429|TBX15 ENSG00000092607|ENST00000369429|TBX15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7813720703125 2 571.779156 1141.54376 NaN NaN NaN NaN NaN NaN NaN 84.634 1 84.634 84.134 85.134 0 0 0 0 0.99091 1 46916 46916 1.6526 0.85899 1 70985 1620 47463 48490 82548 82548 -0.02135125987979336 VLTEVPNI 8 Unmodified _VLTEVPNI_ 0 0 0 nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF nc|ENSG00000197530|Q96AX9-4|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 884.5077514648438 1 884.50876 883.501483 -0.59013 -0.00052198 -0.17265 -0.00015271 -0.76278 -0.00067469 884.5085922188342 76.466 0.44276 75.987 75.812 76.255 -0.47945 52 27 2 0 0 0 0.060415 1 41914 41914 128.37 7.915 1 9765100 70986 9964 47464 48491 82549 82549 0.055072666659384595 VLTEVPNI 8 Unmodified _VLTEVPNI_ 0 0 0 nc|ENSG00000197530|Q96AX9-4|MIB2;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;ENST00000506488.5_1_1:1562112-1565907:+|nuORF;ENST00000479659.5_1_1:1561777-1565907:+|nuORF nc|ENSG00000197530|Q96AX9-4|MIB2 nc|ENSG00000197530|Q96AX9-4|MIB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 884.5079956054688 1 884.50876 883.501483 -0.3336 -0.00029507 0.38234 0.00033818 0.048739 4.311E-05 884.509149938861 84.82 0.69125 78.644 78.3 78.992 -6.1757 75 40 2 0 0 0 0.055731 2 55619 55619;55754 133.7 21.109 1 38204000 70987 9964 47464 48491 82550;82551 82550 0.055072666659384595 VLTGHAPP 8 Unmodified _VLTGHAPP_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.2236022949219 2 396.224146 790.433738 -0.01186 -4.6991E-06 -0.31567 -0.00012507 -0.32752 -0.00012977 396.22385632569126 69.8 0.29147 69.8 69.618 69.91 0 22 13 2 0 0 0 0.80232 1 38840 38840 5.2307 0 1 574900 + 70988 20948 47465 48492 82552 82552 0.030138615257897072 VLTGHAPP 8 Unmodified _VLTGHAPP_ 0 0 0 REV__nc|ENSG00000148396|O15027-2|SEC16A REV__nc|ENSG00000148396|O15027-2|SEC16A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 396.224146 790.433738 -0.01186 -4.6991E-06 -0.31567 -0.00012507 -0.32752 -0.00012977 396.22385632569126 69.8 0.29147 69.8 69.618 69.91 0 0.048597 -0.00013318 NaN 5.2307 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 574900 + 70989 20948 47465 48492 0.030138615257897072 VLTGLEEITI 10 Unmodified _VLTGLEEITI_ 0 0 0 REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF REV__ENST00000559726.5_1_15:50152393-50311102:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3150024414062 2 544.315897 1086.61724 0.21876 0.00011907 -1.2708 -0.00069169 -1.052 -0.00057262 544.3147940234628 92.996 0.29001 86.82 86.626 86.916 -6.1757 29 18 2 0 0 0 0.02987 1 61548 61548 68.081 0 1 13680000 + 70990 18332 47466 48493 82553 82553 0.07739745726144065 VLTGLSIRL 9 Unmodified _VLTGLSIRL_ 0 0 0 ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 ENSG00000141858|ENST00000533683|SAMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.3175354003906 2 486.316035 970.617516 1.3909 0.00067643 0.17244 8.3862E-05 1.5634 0.00076029 486.3160681952286 70.941 0.29153 70.977 70.835 71.127 0.035515 23 13 2 0 0 0 0.025842 1 39057 39057 57.722 6.0922 1 3414700 70991 5377 47467 48494 82554 82554 0.13103210236658924 VLTHGRVRLLL 11 Unmodified _VLTHGRVRLLL_ 0 0 0 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 ENSG00000137154|ENST00000380394|RPS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.9146118164062 2 638.914239 1275.81392 NaN NaN NaN NaN NaN NaN NaN 104.28 1 104.23 103.73 104.73 -0.048737 0 0 0 0.9435 1 57899 57899 0 0 1 70992 4904 47468 48495 82555 82555 0.18705015130421998 VLTHNTFF 8 Unmodified _VLTHNTFF_ 0 0 0 REV__ENSG00000159339|ENST00000375448|PADI4 REV__ENSG00000159339|ENST00000375448|PADI4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7526245117188 2 489.75581 977.497067 NaN NaN NaN NaN NaN NaN NaN 56.334 1 55.848 55.348 56.348 -0.48554 0 0 0 0.94749 1 30585 30585 11.114 0.93107 1 + 70993 21474 47469 48496 82556 82556 0.007418022430556448 VLTKVQHA 8 Unmodified _VLTKVQHA_ 0 0 0 REV__ENSG00000091536|ENST00000647165|MYO15A REV__ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2723999023438 2 448.271627 894.528701 1.218 0.00054601 -0.16975 -7.6093E-05 1.0483 0.00046991 448.27157253725306 19.725 0.074205 17.069 17.016 17.09 -2.6564 5 4 2 0 0 0 0.71527 1 10470 10470 15.847 0 1 1396700 + 70994 17894 47470 48497 82557 82557 0.07721794996996323 VLTLIHVL 8 Unmodified _VLTLIHVL_ 0 0 0 REV__nc|ENSG00000030304|O15146-3|MUSK REV__nc|ENSG00000030304|O15146-3|MUSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.3025512695312 2 454.302396 906.590239 0.23194 0.00010537 0.14836 6.7402E-05 0.3803 0.00017277 454.302432350669 57.982 0.24958 57.492 57.369 57.619 -0.48974 26 11 3 0 0 0 0.57408 1 31514 31514 28.173 1.832 1 2342600 + 70995 17143 47471 48498 82558 82558 0.13320726696281326 VLTRAPIL 8 Unmodified _VLTRAPIL_ 0 0 0 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 ENSG00000145863|ENST00000274545|GABRA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.7918395996094 2 441.792195 881.569838 0.57666 0.00025477 -0.14059 -6.2111E-05 0.43607 0.00019265 441.7919409825225 61.359 0.26485 61.317 61.182 61.446 -0.042057 22 12 3 0 0 0 0.61462 1 33493 33493 24.674 0 1 4986100 70996 5733 47472 48499 82559 82559 0.12431556036472102 VLTTGVLVLI 10 Unmodified _VLTTGVLVLI_ 0 0 0 ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF ENSG00000165699|ENST00000298552|TSC1 ENSG00000165699|ENST00000298552|TSC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.3418579101562 2 514.341718 1026.66888 0.5698 0.00029307 0.18666 9.6009E-05 0.75647 0.00038908 514.3415819525316 72.641 0.27439 72.165 72.02 72.295 -0.47601 25 12 3 0 0 0 0.33553 1 39743 39743 25.399 0 1 1437300 70997 7378 47473 48500 82560 82560 0.15661534210721584 VLTWQEEMT 9 Unmodified _VLTWQEEMT_ 0 0 0 REV__ENST00000607283.5_1_3:53053042-53126502:-|nuORF REV__ENST00000607283.5_1_3:53053042-53126502:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5149841308594 3 379.514597 1135.52196 0.70818 0.00026876 1.0022 0.00038035 1.7104 0.00064911 379.51497603262044 74.06 0.3108 73.585 73.43 73.741 -0.47588 41 13 4 0 0 0 0.56345 1 40507 40507 2.086 0 1 4368500 + 70998 29312 47474 48501 82561 82561 -0.04037930736558337 VLVAHCRL 8 Unmodified _VLVAHCRL_ 0 0 0 REV__ENSG00000185112|ENST00000329759|FAM43A REV__ENSG00000185112|ENST00000329759|FAM43A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.767578125 2 455.768197 909.521842 NaN NaN NaN NaN NaN NaN NaN 71.655 1 71.655 71.155 72.155 0 0 0 0 0.97444 1 39910 39910 0 0 1 + 70999 23474 47475 48502 82562 82562 0.06346158844758065 VLVAHCRL 8 Unmodified _VLVAHCRL_ 0 0 0 REV__ENSG00000185112|ENST00000329759|FAM43A REV__ENSG00000185112|ENST00000329759|FAM43A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7677612304688 2 455.768197 909.521842 0.4438 0.00020227 -1.4245 -0.00064926 -0.98074 -0.00044699 455.7674252799355 71.877 0.30035 71.401 71.293 71.594 -0.47609 19 11 3 0 0 0 0.80975 1 39348 39348 0.79363 0 1 1215800 + 71000 23474 47475 48502 82563 82563 0.06346158844758065 VLVAHCRL 8 Unmodified _VLVAHCRL_ 0 0 0 REV__ENSG00000185112|ENST00000329759|FAM43A REV__ENSG00000185112|ENST00000329759|FAM43A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 455.768197 909.521842 0.4438 0.00020227 -1.4245 -0.00064926 -0.98074 -0.00044699 455.7674252799355 71.877 0.30035 71.401 71.293 71.594 -0.47609 0.011708 -5.1666E-05 NaN 0.79363 19 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1215800 + 71001 23474 47475 48502 0.06346158844758065 VLVAHCRL 8 Unmodified _VLVAHCRL_ 0 0 0 REV__ENSG00000185112|ENST00000329759|FAM43A REV__ENSG00000185112|ENST00000329759|FAM43A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 455.768197 909.521842 1.2859 0.00058605 -1.0817 -0.00049302 0.20411 9.3027E-05 455.7675770721993 71.272 0.44833 71.311 71.109 71.557 0.039024 -0.077721 0.00026081 NaN 0.79363 56 19 4 NaN NaN NaN NaN 0 NaN NaN 0 14767000 + 71002 23474 47475 48502 0.06346158844758065 VLVATSLVLL 10 Unmodified _VLVATSLVLL_ 0 0 0 nc|ENSG00000021461|Q9HB55-6|CYP3A43;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-4|CYP3A43 nc|ENSG00000021461|Q9HB55-6|CYP3A43 nc|ENSG00000021461|Q9HB55-6|CYP3A43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.341552734375 2 514.341718 1026.66888 0.74196 0.00038162 -0.42844 -0.00022037 0.31352 0.00016126 514.3413982183924 90.252 0.74063 84.076 83.615 84.355 -6.1757 52 42 2 0 0 0 0.1028 1 59611 59611 46.021 0 1 10491000 71003 524 47476 48503 82564 82564 0.15661534210698846 VLVDELDSL 9 Unmodified _VLVDELDSL_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7706604003906 2 501.771322 1001.52809 0.63357 0.00031791 -0.49555 -0.00024866 0.13801 6.9251E-05 501.77076674997676 74.521 0.19796 74.521 74.428 74.626 0 11 8 2 0 0 0 0.48152 1 41488 41488 8.5933 0 1 690420 71004 9729 47477 48504 82565 82565 0.02738910766618119 VLVDQSWVL 9 Unmodified _VLVDQSWVL_ 0 0 0 ENSG00000129451|ENST00000358789|KLK10;ENST00000599987.1_1_19:51519093-51520532:-|nuORF ENSG00000129451|ENST00000358789|KLK10 ENSG00000129451|ENST00000358789|KLK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7973022460938 2 529.797675 1057.5808 0.42788 0.00022669 -0.66072 -0.00035005 -0.23284 -0.00012336 529.7973233221111 85.107 0.38393 84.606 84.388 84.772 -0.5015 52 19 3 0 0 0 0.047196 2 46594 46498;46594 46.021 8.047 1 8910700 71005 4135 47478 48505 82566;82567 82567 0.05430913620079991 VLVDQTTGL 9 Unmodified _VLVDQTTGL_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.5250244140625 1 945.525138 944.517862 0.07417 7.0129E-05 0.52758 0.00049884 0.60175 0.00056897 945.525925307195 49.456 0.1629 49.456 49.373 49.536 0 12 6 3 0 0 0 0.12424 1 27205 27205 30.637 7.9003 1 2072000 71006 925 47479 48506 82568 82568 0.04338347832026557 VLVDQTTGL 9 Unmodified _VLVDQTTGL_ 0 0 0 ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 ENSG00000066044|ENST00000407627|ELAVL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2670288085938 2 473.266207 944.517862 0.63358 0.00029985 0.67075 0.00031744 1.3043 0.00061729 473.2665091714485 49.493 0.25375 49.493 49.352 49.606 0 23 10 3 0 0 0 0.2143 1 27238 27238 21.747 5.8995 1 3823800 71007 925 47479 48506 82569 82569 0.04338347832026557 VLVDRTIYI 9 Unmodified _VLVDRTIYI_ 0 0 0 ENSG00000132541|ENST00000254878|RIDA ENSG00000132541|ENST00000254878|RIDA ENSG00000132541|ENST00000254878|RIDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.3269653320312 2 546.326599 1090.63865 -0.30946 -0.00016907 0.39761 0.00021723 0.088152 4.816E-05 546.3268945321367 60.742 0.30496 60.253 60.069 60.374 -0.48932 41 14 4 0 0 0 0.053952 1 33086 33086 43.982 11.196 1 22933000 71008 4420 47480 48507 82570 82570 0.09695175545516577 VLVDSLSLLL 10 Unmodified _VLVDSLSLLL_ 0 0 0 REV__ENST00000487761.5_1_6:32158567-32158600:-|nuORF REV__ENST00000487761.5_1_6:32158567-32158600:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3374633789062 2 536.336633 1070.65871 1.4858 0.00079691 0.2296 0.00012314 1.7154 0.00092006 536.3364649584933 106.76 0.19356 100.59 100.42 100.62 -6.1757 53 34 2 0 0 0 0.72607 1 71425 71425 0 0 1 2893400 + 71009 27834 47481 48508 82571 82571 0.1262092648548787 VLVDSLSLLL 10 Unmodified _VLVDSLSLLL_ 0 0 0 REV__ENST00000487761.5_1_6:32158567-32158600:-|nuORF REV__ENST00000487761.5_1_6:32158567-32158600:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3361206054688 2 536.336633 1070.65871 1.4858 0.00079689 0.40189 0.00021555 1.8877 0.0010124 536.336733349293 106.94 0.17735 100.76 100.62 100.8 -6.1757 50 33 2 0 0 0 0.72607 1 71532 71532 0 0 1 3318000 + 71010 27834 47481 48508 82572 82572 0.1262092648548787 VLVDWLLKQRR 11 Unmodified _VLVDWLLKQRR_ 0 0 0 REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF REV__ENST00000341189.8_1_X:100881584-100881641:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.9613037109375 3 475.961144 1424.8616 0.89779 0.00042731 -0.24843 -0.00011824 0.64936 0.00030907 475.9611153916341 92.459 0.37963 86.284 86.035 86.415 -6.1757 52 22 3 0 0 0 0.69155 1 61166 61166 5.0475 1.9753 1 29176000 + 71011 25703 47482 48509 82573 82573 0.1661666933057404 VLVEDLTQV 9 Unmodified _VLVEDLTQV_ 0 0 0 ENSG00000182318|ENST00000329665|ZSCAN22 ENSG00000182318|ENST00000329665|ZSCAN22 ENSG00000182318|ENST00000329665|ZSCAN22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.288818359375 2 508.28714 1014.55973 NaN NaN NaN NaN NaN NaN NaN 65.172 1 65.172 64.672 65.672 0 0 0 0 0.20498 1 36356 36356 30.225 7.0764 1 71012 9043 47483 48510 82574 82574 0.053029035205554464 VLVEGIVCI 9 Carbamidomethyl (C) _VLVEGIVC(Carbamidomethyl (C))I_ VLVEGIVC(1)I VLVEGIVC(140)I 0 1 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;ENST00000573548.1_1_17:78263625-78265730:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1001.570922851562 1 1001.56998 1000.5627 0.79853 0.00079978 -0.031216 -3.1265E-05 0.76731 0.00076851 1001.5700232966702 91.477 0.8009 85.301 84.939 85.74 -6.1757 106 44 4 0 0 0 0.0012811 1 60708 60708 137.59 22.641 1 22520000 71013 8367 47484 48511 82575 82575 812 0.06244455373746405 VLVFYIPI 8 Unmodified _VLVFYIPI_ 0 0 0 ENSG00000176742|ENST00000641270|OR51V1;nc|ENSG00000176742|Q9H2C8|OR51V1 ENSG00000176742|ENST00000641270|OR51V1 ENSG00000176742|ENST00000641270|OR51V1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 482.2615966796875 2 482.299322 962.584091 1.3159 0.00063464 -2.3221 -0.0011199 -1.0062 -0.00048531 482.2985095782336 95.344 0.59641 89.168 88.82 89.416 -6.1757 48 33 2 0 0 0 8.7369 1 62943 62943 6.3541 0 1 13706000 71014 8619 47485 48512 82576 82576 0.10130208464761381 VLVHTTIL 8 Unmodified _VLVHTTIL_ 0 0 0 ENST00000222690.10_1_7:44869386-44869509:-|nuORF ENST00000222690.10_1_7:44869386-44869509:-|nuORF ENST00000222690.10_1_7:44869386-44869509:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.2852478027344 2 448.284203 894.553853 1.7162 0.00076936 0.6137 0.00027511 2.3299 0.0010445 448.2843014698254 105.45 0.5196 99.271 99.216 99.735 -6.1757 107 65 3 0 0 0 0.80975 2 70635 70635;70729 0.79363 0.10326 1 28302000 71015 11040 47486 48513 82577;82578 82577 0.10235849799562402 VLVMQSEYR 9 Oxidation (M) _VLVM(Oxidation (M))QSEYR_ VLVM(1)QSEYR VLVM(44)QSEYR 0 0 1 ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7904663085938 2 570.789524 1139.56449 0.21576 0.00012316 -0.82795 -0.00047259 -0.61219 -0.00034943 570.789233885039 31.848 0.31612 31.718 31.575 31.891 -0.12915 40 12 4 0 0 0 0.05447 1 16542 16542 43.858 11.073 1 19815000 71016 907 47487 48514 82579 82579 140 0.0002946439167317294 VLVMQSEYR 9 Oxidation (M) _VLVM(Oxidation (M))QSEYR_ 0 0 1 ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN ENSG00000065526|ENST00000375759|SPEN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 570.789524 1139.56449 -0.23354 -0.0001333 -1.9744 -0.001127 -2.208 -0.0012603 570.7881414222277 31.723 0.1513 31.753 31.648 31.8 0.030106 -0.04202 -0.0011056 NaN 43.858 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 904540 71017 907 47487 48514 140 0.0002946439167317294 VLVNRVHLV 9 Unmodified _VLVNRVHLV_ 0 0 0 ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 ENSG00000108771|ENST00000251642|DHX58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.206298828125 3 350.225709 1047.6553 0.3185 0.00011155 -1.2922 -0.00045256 -0.97368 -0.00034101 350.2251509889971 40.687 0.126 40.692 40.633 40.759 0.0050545 8 5 2 0 0 0 0.47846 1 21723 21723 8.7454 0 1 951170 71018 2601 47488 48515 82580 82580 0.1333772122211485 VLVPAATA 8 Unmodified _VLVPAATA_ 0 0 0 REV__ENSG00000095713|ENST00000370597|CRTAC1 REV__ENSG00000095713|ENST00000370597|CRTAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2278747558594 2 371.228897 740.44324 -0.2193 -8.141E-05 -1.418 -0.00052641 -1.6373 -0.00060782 371.2286821025009 37.042 0.97152 37.064 36.706 37.677 0.021545 71 45 3 0 0 0 0.81107 1 19864 19864 0 0 1 4358400 + 71019 17949 47489 48516 82581 82581 0.06263629811303417 VLVRFFYL 8 Unmodified _VLVRFFYL_ 0 0 0 REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF REV__ENST00000518442.5_1_8:109247181-109261015:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8796997070312 3 352.879539 1055.61679 -0.13618 -4.8053E-05 -0.023902 -8.4347E-06 -0.16008 -5.6488E-05 352.879534941682 29.888 0.48543 29.918 29.674 30.159 0.030104 48 19 3 0 0 0 0.74163 1 15668 15668 10.074 2.1638 1 3890100 + 71020 18356 47490 48517 82582 82582 0.09120415587608477 VLVRGLVL 8 Unmodified _VLVRGLVL_ 0 0 0 nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 nc|ENSG00000104973|Q71SY5-5|MED25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8028564453125 2 434.802563 867.590573 0.62143 0.0002702 -0.016549 -7.1954E-06 0.60488 0.000263 434.80255036101585 67.254 0.23126 67.272 67.143 67.375 0.018028 20 11 2 0 0 0 0.67481 1 36921 36921 19.439 0 1 1711100 71021 2266 47491 48518 82583 82583 0.15148146416129293 VLVVEFFAP 9 Unmodified _VLVVEFFAP_ 0 0 0 REV__ENST00000409467.5_1_7:33069288-33075596:-|nuORF REV__ENST00000409467.5_1_7:33069288-33075596:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1021.756530761719 1 1020.57645 1019.56917 1.5958 0.0016286 -0.60326 -0.00061567 0.99256 0.001013 1021.5774143367408 46.845 0.12417 46.812 46.774 46.898 -0.033417 6 5 2 0 0 0 0.58466 1 25244 25244 2.3027 0 1 3335800 + 71022 26690 47492 48519 82584 82584 0.06016716596752758 VLVVHLCI 8 Unmodified _VLVVHLCI_ 0 0 0 REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2 REV__nc|ENSG00000173698|Q8IZP9-10|ADGRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.27490234375 2 448.275324 894.536095 0.37127 0.00016643 -1.7485 -0.00078381 -1.3772 -0.00061738 448.27438989190443 103.56 0.031693 103.56 103.55 103.58 0 12 10 2 0 0 0 0.81107 1 57090 57090 0 0 1 456780 + 71023 22744 47493 48520 82585 82585 0.08460811273039326 VLVVSFSSL 9 Unmodified _VLVVSFSSL_ 0 0 0 ENSG00000158292|ENST00000377893|GPR153 ENSG00000158292|ENST00000377893|GPR153 ENSG00000158292|ENST00000377893|GPR153 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.7830200195312 2 475.781493 949.548434 0.98529 0.00046878 2.4425 0.0011621 3.4278 0.0016309 475.7823075783288 91.56 0.20192 85.384 85.233 85.435 -6.1757 14 10 2 0 0 0 0.32871 1 60544 60544 15.847 1.0089 1 6386600 71024 6577 47494 48521 82586 82586 0.07164126217105604 VLVWVPCFY 9 Unmodified _VLVWVPCFY_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.79248046875 2 563.293714 1124.57287 0.75008 0.00042252 2.8282 0.0015931 3.5782 0.0020156 563.7971110341135 72.129 0.5491 71.653 71.389 71.938 -0.47609 78 23 6 0 0 0 0.203 1 39546 39546 9.3474 1.4373 1 11564000 71025 2112 47495 48522 82587 82587 0.015570630989486745 VLVWYFVNGC 10 Unmodified _VLVWYFVNGC_ 0 0 0 REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1 REV__nc|ENSG00000136275|Q9H7B7|PKD1L1-AS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.801025390625 2 600.299527 1198.5845 0.15981 9.5936E-05 0.41826 0.00025108 0.57807 0.00034701 600.2998306103074 59.399 0.26476 59.346 59.253 59.518 -0.053062 21 13 2 0 0 0 0.60623 1 32432 32432 10.824 2.9138 1 2267900 + 71026 29648 47496 48523 82588 82588 -0.006847398777154012 VLVYGTVERI 10 Unmodified _VLVYGTVERI_ 0 0 0 REV__nc|ENSG00000065361|P21860-3|ERBB3 REV__nc|ENSG00000065361|P21860-3|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8383178710938 2 574.837331 1147.66011 0.31804 0.00018282 0.5157 0.00029644 0.83374 0.00047927 574.8375238483491 61.708 0.27245 61.22 61.052 61.325 -0.48764 19 12 2 0 0 0 0.67755 1 33592 33592 9.3831 0.63772 1 1634500 + 71027 17376 47497 48524 82589 82589 0.09218560574208823 VLVYVTSN 8 Unmodified _VLVYVTSN_ 0 0 0 ENSG00000104341|ENST00000521545|LAPTM4B;nc|ENSG00000104341|Q86VI4|LAPTM4B ENSG00000104341|ENST00000521545|LAPTM4B ENSG00000104341|ENST00000521545|LAPTM4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4920043945312 1 894.49311 893.485833 0.16725 0.0001496 -1.1224 -0.0010039 -0.95512 -0.00085435 894.4918678902404 48.06 0.31826 48.06 47.875 48.193 0 28 15 2 0 0 0 0.57045 1 26263 26263 28.487 0 1 2936000 71028 2196 47498 48525 82590 82590 0.03482980148896786 VLWAFALPYP 10 Unmodified _VLWAFALPYP_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS AL20221201_MKP_PDAC_01 4 392.8861999511719 3 392.886582 1175.63792 NaN NaN NaN NaN NaN NaN NaN 16.981 1 14.394 13.894 14.894 -2.5866 0 0 0 0.96627 1 8839 8839 2.086 0.17963 1 71029 2128 47499 48526 82591 82591 0.05712380896466129 VLWDRTFSL 9 Unmodified _VLWDRTFSL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8098754882812 2 568.808574 1135.60259 0.2539 0.00014442 0.28521 0.00016223 0.53911 0.00030665 568.8086944644805 76.63 0.4224 76.68 76.447 76.869 0.05011 54 17 4 0 0 0 0.0093064 2 42220 42220;42322 83.429 31.16 1 66478000 71030 3121 47500 48527 82592;82593 82592 0.04021718368676375 VLWDRTFSL 9 Unmodified _VLWDRTFSL_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8086547851562 2 568.808574 1135.60259 1.2561 0.00071447 0.12822 7.2931E-05 1.3843 0.0007874 568.8083269994426 94.644 0.73735 88.468 88.083 88.82 -6.1757 124 42 4 0 0 0 0.026499 5 62643 62508;62517;62643;62769;62884 57.249 28.168 1 165120000 71031 3121 47500 48527 82594;82595;82596;82597;82598 82596 0.04021718368676375 VLWDRTFSLF 10 Unmodified _VLWDRTFSLF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3446044921875 2 642.342781 1282.67101 2.1065 0.0013531 0.33534 0.0002154 2.4418 0.0015685 642.3429248211019 94.533 0.39917 94.547 94.323 94.722 0.014244 39 14 4 0 0 0 0.13206 1 52501 52501 55.235 55.235 1 10398000 71032 3121 47501 48528 82599 82599 0.04097962948503664 VLWDRTFSLF 10 Unmodified _VLWDRTFSLF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.344482421875 2 642.342781 1282.67101 1.0975 0.00070496 1.5463 0.00099326 2.6438 0.0016982 642.3449478518887 100.22 0.34129 94.042 93.78 94.122 -6.1757 56 21 4 0 0 0 0.15358 1 66963 66963 51.488 18.702 1 54386000 71033 3121 47501 48528 82600 82600 0.04097962948503664 VLWGETVHL 9 Unmodified _VLWGETVHL_ 0 0 0 ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8;ENST00000430603.1_1_10:30728116-30739489:+|nuORF ENSG00000107968|ENST00000263056|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2908325195312 2 527.290017 1052.56548 0.39689 0.00020928 1.0469 0.00055203 1.4438 0.0007613 527.2906086969323 68.386 0.32603 67.905 67.705 68.031 -0.48071 34 14 3 0 0 0 0.03327 1 37393 37393 53.576 25.089 1 2554900 71034 2538 47502 48529 82601 82601 0.04130046822888289 VLWHFLPVE 9 Unmodified _VLWHFLPVE_ 0 0 0 REV__ENST00000606370.5_2_6:13321120-13321207:-|nuORF REV__ENST00000606370.5_2_6:13321120-13321207:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5473937988281 3 380.546449 1138.61752 1.1292 0.00042971 -0.13958 -5.3115E-05 0.98963 0.0003766 380.5462095447958 18.286 0.14642 15.664 15.594 15.74 -2.6215 13 8 2 0 0 0 0.55144 1 9612 9612 2.4985 0 1 1783100 + 71035 29295 47503 48530 82602 82602 0.05375210236661587 VLWSSRHYAYR 11 Unmodified _VLWSSRHYAYR_ 0 0 0 REV__ENSG00000164532|ENST00000408931|TBX20 REV__ENSG00000164532|ENST00000408931|TBX20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 719.3731689453125 2 719.372935 1436.73132 0.40367 0.00029039 -1.1094 -0.00079809 -0.70576 -0.0005077 719.3720738758154 46.415 0.25158 46.079 45.939 46.19 -0.33664 38 12 4 0 0 0 0.56638 1 24804 24804 13.042 4.2971 1 39028000 + 71036 21922 47504 48531 82603 82603 0.03042073331607753 VLWSSRHYAYR 11 Unmodified _VLWSSRHYAYR_ 0 0 0 REV__ENSG00000164532|ENST00000408931|TBX20 REV__ENSG00000164532|ENST00000408931|TBX20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 719.372935 1436.73132 0.51505 0.00037052 -0.75351 -0.00054205 -0.23845 -0.00017154 719.3723726151239 46.026 0.23139 46.026 45.918 46.149 0 -0.04709 0.00043234 NaN 13.042 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3254100 + 71037 21922 47504 48531 0.03042073331607753 VLWSSRHYAYR 11 Unmodified _VLWSSRHYAYR_ 0 0 0 REV__ENSG00000164532|ENST00000408931|TBX20 REV__ENSG00000164532|ENST00000408931|TBX20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 719.372935 1436.73132 0.40367 0.00029039 -1.1094 -0.00079809 -0.70576 -0.0005077 719.3720738758154 46.415 0.25158 46.079 45.939 46.19 -0.33664 0.0052134 -7.9738E-05 NaN 13.042 38 12 4 NaN NaN NaN NaN 0 NaN NaN 0 39028000 + 71038 21922 47504 48531 0.03042073331607753 VLWSSRHYAYR 11 Unmodified _VLWSSRHYAYR_ 0 0 0 REV__ENSG00000164532|ENST00000408931|TBX20 REV__ENSG00000164532|ENST00000408931|TBX20 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 719.372935 1436.73132 0.7675 0.00055212 -1.363 -0.00098048 -0.59548 -0.00042837 719.3720341494154 46.143 0.19127 46.115 45.997 46.189 -0.028011 0.041876 -0.00044452 NaN 13.042 16 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2870700 + 71039 21922 47504 48531 0.03042073331607753 VLYAFLLLVF 10 Unmodified _VLYAFLLLVF_ 0 0 0 REV__ENSG00000159961|ENST00000641141|OR3A3 REV__ENSG00000159961|ENST00000641141|OR3A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.370361328125 2 599.367736 1196.72092 0.96482 0.00057828 1.2668 0.00075931 2.2317 0.0013376 599.3688794630004 105.11 0.12727 98.933 98.856 98.983 -6.1757 55 20 3 0 0 0 0.70951 1 70367 70367 1.8442 0 1 174130000 + 71040 21508 47505 48532 82604 82604 0.1304269762445074 VLYCRYSR 8 Unmodified _VLYCRYSR_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8519897460938 3 353.851655 1058.53313 1.82 0.00064402 -0.5667 -0.00020053 1.2533 0.00044349 353.8514563641816 95.136 0.75718 88.96 88.642 89.399 -6.1757 70 42 2 0 0 0 0.71527 2 63243 62991;63243 12.241 0 1 9412000 71041 13664 47506 48533 82605;82606 82606 0.006209361482433451 VLYDQPRHV 9 Unmodified _VLYDQPRHV_ 0 0 0 nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12 nc|ENSG00000184634|Q93074-3|MED12 nc|ENSG00000184634|Q93074-3|MED12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2047119140625 3 376.204974 1125.59309 -0.39734 -0.00014948 1.2897 0.00048518 0.89233 0.0003357 376.5396221479966 24.437 0.16143 24.437 24.329 24.49 0 11 7 2 0 0 0 0.51218 1 12497 12497 4.1895 0.90819 1 599220 71042 9279 47507 48534 82607 82607 0.035319500831292316 VLYEKDIQL 9 Unmodified _VLYEKDIQL_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3165283203125 2 560.816064 1119.61758 0.20523 0.0001151 -2.3902 -0.0013405 -2.185 -0.0012254 561.3155451606378 52.371 0.28737 52.371 52.243 52.53 0 41 12 4 0 0 0 0.14 1 29008 29008 29.082 3.6823 1 11983000 71043 7559 47508 48535 82608 82608 0.06255165445986677 VLYEKDIQLF 10 Unmodified _VLYEKDIQLF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3497924804688 2 634.350271 1266.68599 0.15162 9.6178E-05 -0.72473 -0.00045973 -0.57311 -0.00036355 634.349798950893 69.444 0.20398 69.444 69.353 69.557 0 17 8 3 0 0 0 0.54083 1 38696 38696 21.537 3.402 1 721680 71044 7559 47509 48536 82609 82609 0.06331410025836703 VLYEKDIQLF 10 Unmodified _VLYEKDIQLF_ 0 0 0 ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF ENSG00000166971|ENST00000394657|AKTIP ENSG00000166971|ENST00000394657|AKTIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3495483398438 2 634.350271 1266.68599 -0.36476 -0.00023139 -0.16312 -0.00010347 -0.52788 -0.00033486 634.3499681098658 69.948 0.29592 69.469 69.29 69.586 -0.47903 36 13 4 0 0 0 0.10078 1 38196 38196 61.602 28.816 1 8534000 71045 7559 47509 48536 82610 82610 0.06331410025836703 VLYGGLLEHL 10 Unmodified _VLYGGLLEHL_ 0 0 0 ENST00000524670.5_1_11:118869052-118882689:+|nuORF;ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC ENST00000524670.5_1_11:118869052-118882689:+|nuORF ENST00000524670.5_1_11:118869052-118882689:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3202514648438 2 557.318774 1112.623 1.3985 0.00077939 1.8275 0.0010185 3.2259 0.0017979 557.3198265986541 95.911 0.20422 89.735 89.644 89.848 -6.1757 19 11 2 0 0 0 0.087164 1 63539 63539 68.081 22.06 1 12082000 71046 14782 47510 48537 82611 82611 0.07118889028470221 VLYGPDVPTI 10 Unmodified _VLYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2973022460938 2 537.297507 1072.58046 0.0082787 4.4481E-06 0.40709 0.00021873 0.41537 0.00022318 537.2975254640525 71.681 0.46206 71.681 71.442 71.904 0 52 20 4 0 0 0 0.14917 2 39877 39877;39973 39.957 9.3208 1 5281200 71047 1437 47511 48538 82612;82613 82612 0.047074939002413885 VLYGPDVPTI 10 Unmodified _VLYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2982177734375 2 537.297507 1072.58046 0.47872 0.00025721 0.032025 1.7207E-05 0.51074 0.00027442 537.2974653497967 72.153 0.53943 71.677 71.441 71.98 -0.47609 74 23 4 0 0 0 0.031389 2 39428 39428;39523 67.344 25.504 1 31083000 71048 1437 47511 48538 82614;82615 82614 0.047074939002413885 VLYGPDVPTI 10 Unmodified _VLYGPDVPTI_ 0 0 0 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 ENSG00000086548|ENST00000199764|CEACAM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.2987670898438 2 537.297507 1072.58046 0.73538 0.00039512 0.70543 0.00037903 1.4408 0.00077414 537.2975792985089 71.637 0.31952 71.676 71.49 71.809 0.039024 33 14 3 0 0 0 0.14917 1 39410 39410 39.957 5.5556 1 4804200 71049 1437 47511 48538 82616 82616 0.047074939002413885 VLYHVETEV 9 Unmodified _VLYHVETEV_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;nc|ENSG00000129691|Q9UBL3-2|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L;ENST00000520079.1_1_8:37996261-37996586:+|nuORF ENSG00000129691|ENST00000343823|ASH2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7843627929688 2 544.784764 1087.55498 0.096125 5.2368E-05 -1.5497 -0.00084427 -1.4536 -0.00079191 544.7837796975505 42.12 0.16917 42.12 41.992 42.161 0 13 8 2 0 0 0 0.078314 1 22776 22776 50.855 28.119 1 5653400 71050 4159;14720 47512 48539 82617 82617 0.014700193778253379 VLYITHGDMI 10 Unmodified _VLYITHGDMI_ 0 0 0 REV__nc|ENSG00000175518|Q8IYU4-2|UBQLNL REV__nc|ENSG00000175518|Q8IYU4-2|UBQLNL MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.3027954101562 2 581.302267 1160.58998 0.73336 0.0004263 0.66193 0.00038478 1.3953 0.00081109 581.3028922186944 100.68 0.097382 94.509 94.459 94.556 -6.1757 14 6 3 0 0 0 0.24625 1 67428 67428 30.637 2.1497 1 23787000 + 71051 22877 47513 48540 82618 82618 0.016109389141092834 VLYITSNP 8 Unmodified _VLYITSNP_ 0 0 0 ENSG00000138286|ENST00000242505|FAM149B1;ENST00000470798.5_1_10:74987870-74994628:+|nuORF ENSG00000138286|ENST00000242505|FAM149B1 ENSG00000138286|ENST00000242505|FAM149B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 906.4938354492188 1 906.49311 905.485833 -0.028479 -2.5816E-05 2.5812 0.0023398 2.5527 0.002314 906.4936047651406 71.014 0.2934 70.537 70.389 70.682 -0.47735 21 12 2 0 0 0 0.64853 1 38830 38830 21.747 3.6117 1 777720 71052 5037 47514 48541 82619 82619 0.029309801489034726 VLYLLGKKVLL 11 Unmodified _VLYLLGKKVLL_ 0 0 0 REV__ENST00000260197.11_1_11:121502781-121502922:+|nuORF REV__ENST00000260197.11_1_11:121502781-121502922:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 629.9286499023438 2 629.928492 1257.84243 NaN NaN NaN NaN NaN NaN NaN 106.37 1 100.19 99.691 100.69 -6.1757 0 0 0 0.9435 1 71202 71202 0 0 1 + 71053 24957 47515 48542 82620 82620 0.22382319986991206 VLYMDKENI 9 Unmodified _VLYMDKENI_ 0 0 0 REV__ENSG00000186141|ENST00000334163|POLR3C REV__ENSG00000186141|ENST00000334163|POLR3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7884521484375 2 562.78645 1123.55835 0.4779 0.00026896 0.057966 3.2623E-05 0.53587 0.00030158 562.7865054772891 67.925 0.56329 67.925 67.621 68.184 0 80 27 4 0 0 0 0.53666 1 38013 38013 5.2307 0 1 14190000 + 71054 23554 47516 48543 82621 82621 0.0015094616016995133 VLYNESLQL 9 Unmodified _VLYNESLQL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7945556640625 2 539.792589 1077.57063 NaN NaN NaN NaN NaN NaN NaN 66.151 1 66.151 65.651 66.651 0 0 0 0 0.6032 1 36899 36899 12.532 0.89125 1 71055 6408 47517 48544 82622 82622 0.03494305894855643 VLYNESLQL 9 Unmodified _VLYNESLQL_ 0 0 0 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 ENSG00000155827|ENST00000389120|RNF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7946166992188 2 539.792589 1077.57063 0.076743 4.1425E-05 3.0908 0.0016684 3.1675 0.0017098 539.7945394258046 66.643 0.26834 66.16 66.046 66.314 -0.48323 19 12 2 0 0 0 0.32871 1 36417 36417 15.847 0 1 1611500 71056 6408 47517 48544 82623 82623 0.03494305894855643 VLYQWFLIAP 10 Unmodified _VLYQWFLIAP_ 0 0 0 REV__nc|ENSG00000168539|P11229-2|CHRM1 REV__nc|ENSG00000168539|P11229-2|CHRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3528442382812 2 625.352617 1248.69068 NaN NaN NaN NaN NaN NaN NaN 16.063 1 16.068 15.568 16.568 0.0050564 0 0 0 1.0019 1 8036 8036 0.45834 0 1 + 71057 22321 47518 48545 82624 82624 0.0762833895928452 VLYRLLLLLL 10 Unmodified _VLYRLLLLLL_ 0 0 0 REV__nc|ENSG00000154721|P57087-2|JAM2 REV__nc|ENSG00000154721|P57087-2|JAM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.9236450195312 2 614.923209 1227.83187 NaN NaN NaN NaN NaN NaN NaN 86.599 1 86.599 86.099 87.099 0 0 0 0 1.0061 1 47965 47965 0 0 1 + 71058 21242 47519 48546 82625 82625 0.22706337332579096 VMADIRELI 9 Unmodified _VMADIRELI_ 0 0 0 ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3 ENSG00000111231|ENST00000228827|GPN3 ENSG00000111231|ENST00000228827|GPN3 MSMS AL20221201_MKP_PDAC_01 4 530.2972412109375 2 530.296985 1058.57942 NaN NaN NaN NaN NaN NaN NaN 84.782 1 78.606 78.106 79.106 -6.1757 0 0 0 0.26013 1 55798 55798 27.223 2.5493 1 71059 2769 47520 48547 82626 82626 0.05246956259702529 VMADIRELI 9 Unmodified _VMADIRELI_ 0 0 0 ENSG00000111231|ENST00000228827|GPN3;nc|ENSG00000111231|Q9UHW5-2|GPN3;nc|ENSG00000111231|Q9UHW5-3|GPN3 ENSG00000111231|ENST00000228827|GPN3 ENSG00000111231|ENST00000228827|GPN3 MSMS AL20221201_MKP_PDAC_01 4 530.2984619140625 2 530.296985 1058.57942 NaN NaN NaN NaN NaN NaN NaN 85.118 1 78.942 78.442 79.442 -6.1757 0 0 0 0.26013 1 56041 56041 27.223 0.33958 1 71060 2769 47520 48547 82627 82627 0.05246956259702529 VMAPRALLL 9 Oxidation (M) _VM(Oxidation (M))APRALLL_ VM(1)APRALLL VM(48)APRALLL 0 0 1 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3045654296875 2 500.304613 998.594672 0.3226 0.0001614 -0.25968 -0.00012992 0.062923 3.148E-05 500.30456310535584 60.116 0.54589 60.063 59.754 60.3 -0.053062 80 28 3 0 0 0 0.042911 2 32880 32773;32880 48.346 11.919 1 48530000 71061 10298 47521 48548 82628;82629 82629 1676 0.09531867847556441 VMAPRALLL 9 Oxidation (M) _VM(Oxidation (M))APRALLL_ VM(1)APRALLL VM(46)APRALLL 0 0 1 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3034973144531 2 500.304613 998.594672 0.53618 0.00026825 0.055169 2.7601E-05 0.59135 0.00029585 500.3048354334651 65.351 0.59376 59.175 58.868 59.461 -6.1757 89 33 4 0 0 0 0.047196 2 42280 42280;42402 46.021 11.919 1 63337000 71062 10298 47521 48548 82630;82631 82630 1676 0.09531867847556441 VMAPRALLL 9 Unmodified _VMAPRALLL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.3083190917969 2 492.307155 982.599758 1.3023 0.00064113 -0.28174 -0.0001387 1.0206 0.00050243 492.30700588935815 66.385 0.25961 66.394 66.26 66.519 0.0095596 33 12 4 0 0 0 0.019303 1 36423 36423 64.236 13.381 1 5161200 71063 10298 47521 48549 82632 82632 0.10776171710165272 VMAPRALLL 9 Unmodified _VMAPRALLL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF nc|ENSG00000204525|P10321-2|HLA-C nc|ENSG00000204525|P10321-2|HLA-C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.7375793457031 2 492.307155 982.599758 0.99385 0.00048928 -0.52867 -0.00026027 0.46518 0.00022901 492.30733820312656 70.615 0.40186 64.439 64.281 64.683 -6.1757 28 21 2 0 0 0 0.18882 1 46115 46115 15.847 4.2069 1 29550000 71064 10298 47521 48549 82633 82633 0.10776171710165272 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(40)APRTLLL 0 0 1 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.309814453125 2 515.309895 1028.60524 0.3826 0.00019716 0.38833 0.00020011 0.77093 0.00039727 515.3094509578336 57.583 0.51751 57.093 56.729 57.247 -0.48974 56 24 3 0 0 0 0.069655 2 31208 31208;31311 40.239 17.503 1 10215000 71065 10398 47522 48550 82634;82635 82634 1691 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(48)APRTLLL 0 0 1 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3102416992188 2 515.309895 1028.60524 0.88426 0.00045567 -0.86917 -0.00044789 0.01509 7.7759E-06 515.3095441216864 57.022 0.77115 56.955 56.761 57.532 -0.067547 131 38 5 0 0 0 0.044296 2 30956 30956;31062 47.594 18.513 1 179030000 71066 10398 47522 48550 82636;82637 82636 1691 0.0920785050197992 VMAPRTLLL 9 Oxidation (M) _VM(Oxidation (M))APRTLLL_ VM(1)APRTLLL VM(46)APRTLLL 0 0 1 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.3104248046875 2 515.309895 1028.60524 1.4839 0.00076469 -0.35773 -0.00018434 1.1262 0.00058035 515.3099069351614 62.468 1.0283 56.292 55.921 56.949 -6.1757 195 54 5 0 0 0 0.047714 3 40353 40089;40353;40483 45.74 19.472 1 667400000 71067 10398 47522 48550 82638;82639;82640 82639 1691 0.0920785050197992 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3125915527344 2 507.312438 1012.61032 0.51056 0.00025901 -0.23644 -0.00011995 0.27411 0.00013906 507.312476599091 67.788 1.006 61.612 61.181 62.187 -6.1757 155 58 4 0 0 0 0.044296 3 44122 44122;44255;44395 47.594 18.513 1 603080000 71068 10398 47522 48551 82641;82642;82643 82641 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.3121643066406 2 507.312438 1012.61032 0.75416 0.0003826 -0.76132 -0.00038623 -0.0071542 -3.6294E-06 507.3122619454686 70.111 1.1947 63.936 63.36 64.555 -6.1757 148 66 3 0 0 0 0.010301 6 45609 45488;45609;45724;45856;45988;46143 79.596 43.469 1 93054000 71069 10398 47522 48551 82644;82645;82646;82647;82648;82649 82645 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.2712707519531 2 507.312438 1012.61032 0.8447 0.00042853 -0.40006 -0.00020296 0.44464 0.00022557 507.3125996724348 68.677 0.5214 62.501 62.348 62.869 -6.1757 38 28 2 0 0 0 0.12281 1 44809 44809 36.506 12.296 1 15183000 71070 10398 47522 48551 82650 82650 0.10452154364600119 VMAPRTLLL 9 Unmodified _VMAPRTLLL_ 0 0 0 ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF ENSG00000206503|ENST00000376809|HLA-A ENSG00000206503|ENST00000376809|HLA-A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.312438 1012.61032 0.47779 0.00024239 -0.69891 -0.00035456 -0.22111 -0.00011217 507.31211596421775 62.656 0.32512 62.634 62.486 62.811 -0.021614 0.066663 -8.5154E-05 NaN 29.841 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 9713500 71071 10398 47522 48551 0.10452154364600119 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(40)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.302978515625 2 508.30207 1014.58959 -0.040422 -2.0546E-05 0.60897 0.00030954 0.56855 0.000289 508.30237765585855 51.13 0.46218 50.717 50.394 50.856 -0.41351 60 22 3 0 0 0 0.069655 1 27432 27432 40.239 17.503 1 9832100 71072 10636 47523 48552 82651 82651 1707 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(40)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3029479980469 2 508.30207 1014.58959 0.93573 0.00047564 -1.2428 -0.0006317 -0.30703 -0.00015606 508.3018200564704 50.788 0.55677 50.734 50.305 50.862 -0.053871 107 27 5 0 0 0 0.069655 2 27330 27330;27430 40.239 17.503 1 48880000 71073 10636 47523 48552 82652;82653 82652 1707 0.08287563984924873 VMAPRTVLL 9 Oxidation (M) _VM(Oxidation (M))APRTVLL_ VM(1)APRTVLL VM(42)APRTVLL 0 0 1 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3016662597656 2 508.30207 1014.58959 0.96018 0.00048806 -1.0107 -0.00051376 -0.05055 -2.5695E-05 508.30162496643163 52.595 0.91795 52.536 52.148 53.066 -0.058918 151 45 5 0 0 0 0.062454 1 28421 28421 41.956 16.556 1 265530000 71074 10636 47523 48552 82654 82654 1707 0.08287563984924873 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3045043945312 2 500.304613 998.594672 -0.47727 -0.00023878 0.56335 0.00028184 0.086075 4.3064E-05 500.3050224969244 56.04 0.20957 55.971 55.866 56.075 -0.068737 16 10 2 0 0 0 0.044296 1 30463 30463 47.594 18.513 1 5022100 71075 10636 47523 48553 82655 82655 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3053283691406 2 500.304613 998.594672 0.82012 0.00041031 3.6471 0.0018247 4.4672 0.002235 500.3070465280965 57.78 0.16135 57.714 57.634 57.795 -0.066036 19 7 3 0 0 0 0.1685 1 31442 31442 26.268 9.3258 1 13369000 71076 10636 47523 48553 82656 82656 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3048400878906 2 500.304613 998.594672 1.0775 0.00053909 0.35716 0.00017869 1.4347 0.00071778 500.3047639934974 61.805 0.47588 55.629 55.367 55.843 -6.1757 41 24 2 0 0 0 0.029718 2 39727 39727;39859 55.503 22.717 1 179990000 71077 10636 47523 48553 82657;82658 82657 0.09531867847545072 VMAPRTVLL 9 Unmodified _VMAPRTVLL_ 0 0 0 ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF ENSG00000234745|ENST00000412585|HLA-B ENSG00000234745|ENST00000412585|HLA-B MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3050537109375 2 500.304613 998.594672 0.94153 0.00047105 -0.53275 -0.00026654 0.40879 0.00020452 500.3044689347431 63.278 0.72044 57.102 56.803 57.523 -6.1757 166 40 5 0 0 0 0.044011 4 41001 40738;40863;41001;41147 47.749 21.036 1 1201800000 71078 10636 47523 48553 82659;82660;82661;82662 82661 0.09531867847545072 VMCKKYYVF 9 Unmodified _VMCKKYYVF_ 0 0 0 REV__ENST00000572607.1_1_17:454958-465900:-|nuORF REV__ENST00000572607.1_1_17:454958-465900:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.8010864257812 2 590.798306 1179.58206 NaN NaN NaN NaN NaN NaN NaN 63.318 1 63.318 62.818 63.818 0 0 0 0 0.7243 1 35318 35318 8.5933 1.4916 1 + 71079 20523 47524 48554 82663 82663 -0.0005491160702604247 VMDGVAPD 8 Unmodified _VMDGVAPD_ 0 0 0 REV__nc|ENSG00000181036|Q6DN72-4|FCRL6 REV__nc|ENSG00000181036|Q6DN72-4|FCRL6 MSMS AL20221201_MKP_PDAC_01 4 402.1813354492188 2 402.183829 802.353105 NaN NaN NaN NaN NaN NaN NaN 0.038622 1 -2.4433 -2.9433 -1.9433 -2.482 0 0 0 0.97444 1 19 19 0.69038 0 1 + 71080 23185 47525 48555 82664 82664 -0.05597787579415581 VMDSKIVQV 9 Oxidation (M) _VM(Oxidation (M))DSKIVQV_ VM(1)DSKIVQV VM(59)DSKIVQV 0 0 1 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7809448242188 2 517.781167 1033.54778 -0.40813 -0.00021132 -1.0085 -0.00052218 -1.4166 -0.0007335 517.781188330442 33.124 0.45703 33.124 32.908 33.365 0 72 22 4 0 0 0 0.024189 1 17308 17308 59.368 31.74 1 58631000 71081 3014;9881 47526 48556 82665 82665 520 0.03234963505747146 VMDSKIVQV 9 Oxidation (M) _VM(Oxidation (M))DSKIVQV_ 0 0 1 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.781167 1033.54778 0.035672 1.847E-05 -2.5483 -0.0013195 -2.5127 -0.001301 517.7805588752886 32.984 0.25196 33.014 32.888 33.14 0.029743 -0.12285 -0.0013253 NaN 59.368 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1030800 71082 3014;9881 47526 48556 520 0.03234963505747146 VMDSKIVQV 9 Oxidation (M) _VM(Oxidation (M))DSKIVQV_ 0 0 1 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 517.781167 1033.54778 1.1825 0.0006123 -1.5717 -0.00081377 -0.38911 -0.00020147 517.7807632792052 37.768 0.54193 33.399 33.144 33.686 -4.3689 0.26204 -0.00031385 NaN 59.368 116 32 4 NaN NaN NaN NaN 0 NaN NaN 0 116780000 71083 3014;9881 47526 48556 520 0.03234963505747146 VMDSKIVQV 9 Unmodified _VMDSKIVQV_ 0 0 0 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000025800|ENST00000373625|KPNA6;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5 ENSG00000114030|ENST00000344337|KPNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7837829589844 2 509.78371 1017.55287 0.65783 0.00033535 0.027509 1.4024E-05 0.68534 0.00034937 509.783855472161 47.186 0.50577 42.106 41.844 42.35 -5.0805 124 38 4 0 0 0 0.013118 3 29100 29100;29236;29370 71.708 32.832 1 219240000 71084 3014;9881 47526 48557 82666;82667;82668 82666 0.044792673683673456 VMDSPVHL 8 Oxidation (M) _VM(Oxidation (M))DSPVHL_ VM(1)DSPVHL VM(53)DSPVHL 0 0 1 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.2267456054688 2 457.226028 912.437503 0.62695 0.00028666 -1.3129 -0.00060031 -0.68599 -0.00031365 457.22553091210386 37.19 0.34253 37.19 36.916 37.259 0 26 16 2 0 0 0 0.32412 1 19751 19751 52.693 18.506 1 1746300 71085 1987 47527 48558 82669 82669 339 -0.02221836762635121 VMDVAFVQF 9 Oxidation (M) _VM(Oxidation (M))DVAFVQF_ VM(1)DVAFVQF VM(42)DVAFVQF 0 0 1 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2608032226562 2 536.26261 1070.51067 -0.92954 -0.00049848 0.62555 0.00033546 -0.30399 -0.00016302 536.2631632758522 77.846 0.44853 77.363 77.143 77.591 -0.4826 70 33 3 0 0 0 0.06187 1 42533 42533 42.095 15.211 1 10528000 71086 2113 47528 48559 82670 82670 367 -0.021767080400195482 VMDVAFVQF 9 Oxidation (M) _VM(Oxidation (M))DVAFVQF_ 0 0 1 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 536.26261 1070.51067 0.2703 0.00014495 2.1542 0.0011552 2.4245 0.0013002 536.7639547849368 77.4 0.058075 77.4 77.362 77.42 0 0.038098 0.0020151 NaN 42.095 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 1031600 71087 2113 47528 48559 367 -0.021767080400195482 VMDVAFVQF 9 Unmodified _VMDVAFVQF_ 0 0 0 ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|4|intron;ENSG00000185164.14,NOMO2,chr16,-,I34.1,18433476,18434653|31|18.25|2|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|3|intron;ENSG00000185164.14,NOMO2,chr16,-,I25.1,18516011,18517188|33|22.79|1|intron ENSG00000185164|ENST00000622306|NOMO2 ENSG00000185164|ENST00000622306|NOMO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2630004882812 2 528.265153 1054.51575 0.36169 0.00019107 -1.1995 -0.00063367 -0.83784 -0.0004426 528.264356268603 90.212 0.37117 89.71 89.534 89.905 -0.50172 36 15 3 0 0 0 0.48152 1 49280 49280 8.5933 3.3626 1 1373200 71088 2113 47528 48560 82671 82671 -0.009324041774107172 VMDVQYNKF 9 Oxidation (M) _VM(Oxidation (M))DVQYNKF_ VM(1)DVQYNKF VM(96)DVQYNKF 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2763671875 2 580.276249 1158.53795 0.0027223 1.5797E-06 -0.18685 -0.00010842 -0.18412 -0.00010684 580.2760984864294 35.557 0.41537 35.557 35.4 35.816 0 37 20 2 0 0 0 0.0082353 2 18769 18769;18872 96.111 59.143 1 12076000 71089 8844 47529 48561 82672;82673 82672 1491 -0.03498224499639946 VMDVQYNKF 9 Oxidation (M) _VM(Oxidation (M))DVQYNKF_ VM(1)DVQYNKF VM(63)DVQYNKF 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2752075195312 2 580.276249 1158.53795 -0.42907 -0.00024898 -1.1648 -0.00067592 -1.5939 -0.0009249 580.2758161874732 35.847 0.32053 35.625 35.43 35.751 -0.2224 17 13 2 0 0 0 0.020973 1 18835 18835 62.573 44.426 1 2627900 71090 8844 47529 48561 82674 82674 1491 -0.03498224499639946 VMDVQYNKF 9 Oxidation (M) _VM(Oxidation (M))DVQYNKF_ VM(1)DVQYNKF VM(72)DVQYNKF 0 0 1 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MSMS AL20221201_MKP_PDAC_01 4 580.2781982421875 2 580.276249 1158.53795 NaN NaN NaN NaN NaN NaN NaN 40.008 1 35.479 34.979 35.979 -4.5294 0 0 0 0.025332 1 23830 23830 71.922 42.841 1 71091 8844 47529 48561 82675 82675 1491 -0.03498224499639946 VMECFLLCAG 10 Unmodified _VMECFLLCAG_ 0 0 0 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 REV__nc|ENSG00000181264|Q6ZRR5-3|TLCD5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2224731445312 3 362.499125 1084.47554 0.5941 0.00021536 -1.0468 -0.00037947 -0.45271 -0.00016411 362.4985824489148 72.471 0.082573 71.995 71.959 72.041 -0.47609 5 3 2 0 0 0 0.23981 1 39659 39659 0.15932 0 1 298200 + 71092 29827 47530 48562 82676 82676 -0.06331410163852524 VMEELCVFSF 10 Unmodified _VMEELCVFSF_ 0 0 0 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 ENSG00000170745|ENST00000304101|KCNS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.326416015625 2 602.27486 1202.53517 NaN NaN NaN NaN NaN NaN NaN 58.299 1 58.299 57.799 58.799 0 0 0 0 0.96981 1 32459 32459 3.9444 0 1 71093 8018 47531 48563 82677 82677 -0.057998159488306555 VMELWYVHY 9 Unmodified _VMELWYVHY_ 0 0 0 REV__ENSG00000196083|ENST00000447382|IL1RAP REV__ENSG00000196083|ENST00000447382|IL1RAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.3001708984375 2 620.296985 1238.57942 0.48126 0.00029852 1.9213 0.0011918 2.4025 0.0014903 620.7990885632939 68.06 0.17525 68.06 67.971 68.146 0 12 8 2 0 0 0 0.58466 1 37956 37956 2.3027 0.24298 1 390600 + 71094 23784 47532 48564 82678 82678 -0.03033043740310859 VMELWYVHY 9 Unmodified _VMELWYVHY_ 0 0 0 REV__ENSG00000196083|ENST00000447382|IL1RAP REV__ENSG00000196083|ENST00000447382|IL1RAP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 620.296985 1238.57942 0.48126 0.00029852 1.9213 0.0011918 2.4025 0.0014903 620.7990885632939 68.06 0.17525 68.06 67.971 68.146 0 0 0 NaN 2.3027 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 390600 + 71095 23784 47532 48564 -0.03033043740310859 VMETRAVAM 9 Unmodified _VMETRAVAM_ 0 0 0 chr12:54283162-54284258|179|37.28|0.0|21.83|+|0|HNRNPA1,HNRNPA1|1 chr12:54283162-54284258|179|37.28|0.0|21.83|+|0|HNRNPA1,HNRNPA1|1 chr12:54283162-54284258|179|37.28|0.0|21.83|+|0|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2530822753906 2 504.254262 1006.49397 0.9827 0.00049553 -3.001 -0.0015133 -2.0183 -0.0010177 504.2528860365719 69.101 0.38812 62.926 62.822 63.21 -6.1757 37 21 2 0 0 0 0.43463 1 45225 45225 10.824 0 1 52550000 71096 80 47533 48565 82679 82679 -0.009015321976335144 VMFFIMLPYD 10 Unmodified _VMFFIMLPYD_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.3087158203125 2 638.311246 1274.60794 -0.52276 -0.00033368 -2.7179 -0.0017348 -3.2406 -0.0020685 638.3091283285735 19.085 0.099604 19.085 18.994 19.094 0 9 6 2 0 0 0 0.70951 1 9504 9504 1.8442 0.51471 1 574350 + 71097 18330 47534 48566 82680 82680 -0.018380621553887977 VMFKKIKSFEV 11 Unmodified _VMFKKIKSFEV_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MSMS AL20221201_MKP_PDAC_01 4 452.5969543457031 3 452.596703 1354.76828 NaN NaN NaN NaN NaN NaN NaN 88.218 1 82.042 81.542 82.542 -6.1757 0 0 0 0.48432 1 58193 58193 25.155 15.611 1 71098 10861 47535 48567 82681 82681 0.10508608833151811 VMFLFSYIL 9 Unmodified _VMFLFSYIL_ 0 0 0 ENSG00000168131|ENST00000303324|OR2B2 ENSG00000168131|ENST00000303324|OR2B2 ENSG00000168131|ENST00000303324|OR2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2085876464844 3 378.208556 1131.60384 -0.55563 -0.00021014 -0.26465 -0.00010009 -0.82028 -0.00031024 378.20836834456924 18.331 0.099253 18.354 18.319 18.418 0.023106 26 16 2 0 0 0 0.54444 1 9178 9178 2.7352 1.2801 1 486880 71099 7720 47536 48568 82682 82682 0.04330216413200105 VMFMHCSNTG 10 Unmodified _VMFMHCSNTG_ 0 0 0 REV__ENST00000355693.4_1_11:73583912-73584044:-|nuORF REV__ENST00000355693.4_1_11:73583912-73584044:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1553039550781 3 376.154129 1125.44056 NaN NaN NaN NaN NaN NaN NaN 14.21 1 14.179 13.679 14.679 -0.030868 0 0 0 1.0019 1 6893 6893 0.15932 0 1 + 71100 25814 47537 48569 82683 82683 -0.11714652971818396 VMFRKSVM 8 Unmodified _VMFRKSVM_ 0 0 0 ENST00000484143.1_1_8:38940202-38940244:+|nuORF ENST00000484143.1_1_8:38940202-38940244:+|nuORF ENST00000484143.1_1_8:38940202-38940244:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2701416015625 2 499.269716 996.524878 0.16939 8.4573E-05 0.7394 0.00036916 0.9088 0.00045373 499.26991965288573 33.841 0.18315 33.87 33.769 33.952 0.028934 11 7 2 0 0 0 0.78849 1 17828 17828 9.3474 0 1 1413300 71101 14146 47538 48570 82684 82684 0.02647665907272767 VMGACPLI 8 Unmodified _VMGACPLI_ 0 0 0 REV__ENST00000485392.5_1_6:32120942-32122093:-|nuORF REV__ENST00000485392.5_1_6:32120942-32122093:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.2119750976562 2 402.211335 802.408117 NaN NaN NaN NaN NaN NaN NaN 68.689 1 68.208 67.708 68.708 -0.48071 0 0 0 0.97444 1 37544 37544 0.79363 0 1 + 71102 27778 47539 48571 82685 82685 -0.000990723124800752 VMGIFANCIF 10 Carbamidomethyl (C) _VMGIFANC(Carbamidomethyl (C))IF_ VMGIFANC(1)IF VMGIFANC(64)IF 0 1 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2865600585938 2 586.285563 1170.55657 1.2241 0.0007177 -0.79548 -0.00046638 0.42866 0.00025132 586.285374095824 100.76 0.12376 94.585 94.528 94.651 -6.1757 19 8 3 0 0 0 0.039183 1 67479 67479 63.563 41.816 1 33551000 71103 2059 47540 48572 82686 82686 203 -0.021883861294554663 VMGLKRAH 8 Unmodified _VMGLKRAH_ 0 0 0 ENST00000447566.5_1_22:41166840-41215302:-|nuORF;ENSG00000100372|ENST00000435456|SLC25A17 ENST00000447566.5_1_22:41166840-41215302:-|nuORF ENST00000447566.5_1_22:41166840-41215302:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2656860351562 2 456.265822 910.517091 1.0455 0.00047701 -1.2475 -0.00056917 -0.20198 -9.2156E-05 456.26567543602454 34.283 0.26138 30.298 30.15 30.411 -3.9853 25 14 3 0 0 0 0.6895 1 19715 19715 18.135 7.9516 1 9049500 71104 1808 47541 48573 82687 82687 0.058252747020105744 VMHKQLLLF 9 Oxidation (M) _VM(Oxidation (M))HKQLLLF_ VM(1)HKQLLLF VM(42)HKQLLLF 0 0 1 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2;ARFIP2|p.K292Q|1|0.49|ENSG00000132254|chr11:6477265-6477265|T/G|missense_variant nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.828125 2 572.830995 1143.64744 0.35706 0.00020453 0.069363 3.9733E-05 0.42642 0.00024427 572.8306075176139 54.884 0.21688 54.816 54.661 54.878 -0.068737 21 10 3 0 0 0 0.06187 1 29806 29806 42.095 25.152 1 2668300 71105 4380 47542 48574 82688 82688 794 0.08135825910358108 VMHKQLLLF 9 Unmodified _VMHKQLLLF_ 0 0 0 nc|ENSG00000132254|P53365-2|ARFIP2;nc|ENSG00000132254|P53365-3|ARFIP2;ENSG00000132254|ENST00000396777|ARFIP2;ARFIP2|p.K292Q|1|0.49|ENSG00000132254|chr11:6477265-6477265|T/G|missense_variant nc|ENSG00000132254|P53365-2|ARFIP2 nc|ENSG00000132254|P53365-2|ARFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8920593261719 3 376.89145 1127.65252 1.4129 0.00053251 1.4534 0.00054777 2.8663 0.0010803 377.2264531407758 91.446 0.34143 85.27 85.111 85.452 -6.1757 31 18 2 0 0 0 0.21643 1 60442 60442 21.537 13.381 1 9412800 71106 4380 47542 48575 82689 82689 0.09380129772966939 VMIAATAA 8 Unmodified _VMIAATAA_ 0 0 0 REV__ENST00000397102.5_1_3:10355120-10362775:-|nuORF REV__ENST00000397102.5_1_3:10355120-10362775:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.2060241699219 2 374.207107 746.399661 0.13132 4.914E-05 -0.66631 -0.00024934 -0.53499 -0.0002002 374.20655650092453 59.038 0.42995 59.038 58.877 59.307 0 40 18 3 0 0 0 0.81107 1 32866 32866 0 0 1 4833900 + 71107 26529 47543 48576 82690 82690 0.016316970425236832 VMIAATAA 8 Unmodified _VMIAATAA_ 0 0 0 REV__ENST00000397102.5_1_3:10355120-10362775:-|nuORF REV__ENST00000397102.5_1_3:10355120-10362775:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.2067260742188 2 374.207107 746.399661 0.31704 0.00011864 -1.087 -0.00040675 -0.76992 -0.00028811 374.20658182833137 59.551 0.33783 59.06 58.876 59.214 -0.49079 27 15 2 0 0 0 0.81107 1 32374 32374 0 0 1 1626800 + 71108 26529 47543 48576 82691 82691 0.016316970425236832 VMIELAILLL 10 Unmodified _VMIELAILLL_ 0 0 0 REV__nc|ENSG00000164520|Q8TD07-4|RAET1E REV__nc|ENSG00000164520|Q8TD07-4|RAET1E MSMS AL20221201_MKP_PDAC_01 4 564.3510131835938 2 564.359053 1126.70355 NaN NaN NaN NaN NaN NaN NaN 102.29 1 96.117 95.617 96.617 -6.1757 0 0 0 0.92825 1 68648 68648 6.7232 0 1 + 71109 21921 47544 48577 82692 82692 0.14527034027150876 VMILAEPA 8 Unmodified _VMILAEPA_ 0 0 0 REV__ENST00000494792.1_1_10:126307332-126395327:-|nuORF REV__ENST00000494792.1_1_10:126307332-126395327:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 843.464111328125 1 843.464452 842.457176 1.6119 0.0013596 -1.1102 -0.0009364 0.50169 0.00042316 843.463304885629 100.87 0.19233 94.692 94.623 94.815 -6.1757 21 11 3 0 0 0 0.2655 1 67554 67554 59.795 10.126 1 67794000 + 71110 27944 47545 48578 82693 82693 0.029645392481029376 VMINVERG 8 Unmodified _VMINVERG_ 0 0 0 REV__ENST00000536255.6_1_17:5323045-5323228:+|nuORF REV__ENST00000536255.6_1_17:5323045-5323228:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.2465209960938 2 459.247295 916.480036 NaN NaN NaN NaN NaN NaN NaN 52.394 1 52.336 51.836 52.836 -0.058918 0 0 0 0.97444 1 28383 28383 3.5965 0.70727 1 + 71111 28537 47546 48579 82694 82694 0.018455583655963892 VMKEPVKKL 9 Unmodified _VMKEPVKKL_ 0 0 0 REV__nc|ENSG00000091140|P09622-2|DLD REV__nc|ENSG00000091140|P09622-2|DLD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5383911132812 3 357.891339 1070.65219 0.70863 0.00025361 -4.1364 -0.0014804 -3.4277 -0.0012268 357.89012495587116 50.676 0.21804 50.622 50.47 50.688 -0.053875 14 10 2 0 0 0 0.21806 1 27369 27369 1.0715 0.10919 1 816370 + 71112 17884 47547 48580 82695 82695 0.11968710053088216 VMKFVLIK 8 Unmodified _VMKFVLIK_ 0 0 0 REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.314697265625 2 489.314449 976.614345 0.06832 3.343E-05 -0.23405 -0.00011452 -0.16573 -8.1092E-05 489.3144130914011 84.933 0.32052 84.997 84.814 85.135 0.063171 22 13 2 0 0 0 0.80975 2 46962 46962;47068 0.79363 0.10326 1 27126000 + 71113 27448 47548 48581 82696;82697 82696 0.1251024385828714 VMKFVLIK 8 Unmodified _VMKFVLIK_ 0 0 0 REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF REV__ENST00000468309.1_1_10:21957921-21959695:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 489.314449 976.614345 0.06832 3.343E-05 -0.23405 -0.00011452 -0.16573 -8.1092E-05 489.3144130914011 84.933 0.32052 84.997 84.814 85.135 0.063171 0 0 NaN 0.79363 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 27126000 + 71114 27448 47548 48581 0.1251024385828714 VMKSLTQTF 9 Oxidation (M) _VM(Oxidation (M))KSLTQTF_ VM(1)KSLTQTF VM(44)KSLTQTF 0 0 1 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.782958984375 2 535.781167 1069.54778 -0.57045 -0.00030563 1.8457 0.00098889 1.2753 0.00068326 535.78240322936 36.362 0.21478 36.112 35.979 36.193 -0.2497 21 9 3 0 0 0 0.05447 1 19064 19064 43.858 30.816 1 3845800 71115 956 47549 48582 82698 82698 153 0.015789635056989937 VMKSLTQTF 9 Oxidation (M) _VM(Oxidation (M))KSLTQTF_ 0 0 1 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 ENSG00000067334|ENST00000436063|DNTTIP2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 535.781167 1069.54778 0.77044 0.00041278 1.7937 0.00096103 2.5641 0.0013738 535.7821306640212 40.617 0.2575 36.088 35.971 36.228 -4.5294 0.0065784 0.00038922 NaN 43.858 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 5180800 71116 956 47549 48582 153 0.015789635056989937 VMLDVPIRL 9 Oxidation (M) _VM(Oxidation (M))LDVPIRL_ VM(1)LDVPIRL VM(75)LDVPIRL 0 0 1 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3153686523438 2 536.315177 1070.6158 0.18661 0.00010008 -0.65972 -0.00035382 -0.47311 -0.00025374 536.3149242452689 76.018 0.33974 76.066 75.864 76.204 0.047951 40 14 4 0 0 0 0.011968 1 41899 41899 74.929 51.781 1 19807000 71117 1153 47550 48583 82699 82699 191 0.08331833156375978 VMLDVPIRL 9 Unmodified _VMLDVPIRL_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7879638671875 2 528.31772 1054.62089 1.4816 0.00078274 0.7194 0.00038007 2.201 0.0011628 528.3173203828487 81.459 0.28263 81.519 81.397 81.68 0.059929 16 10 2 0 0 0 0.19496 1 45031 45031 13.906 5.9959 1 1651200 71118 1153 47550 48584 82700 82700 0.0957613701898481 VMLDVPIRL 9 Unmodified _VMLDVPIRL_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.3203735351562 2 528.31772 1054.62089 1.1984 0.00063314 0.44046 0.0002327 1.6389 0.00086585 528.317377179859 96.932 0.42259 90.756 90.622 91.044 -6.1757 70 24 5 0 0 0 0.060956 1 64179 64179 53.833 26.949 1 101740000 71119 1153 47550 48584 82701 82701 0.0957613701898481 VMLGTQLLYKF 11 Unmodified _VMLGTQLLYKF_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;ENST00000525966.1_1_11:14695245-14695548:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3734130859375 2 656.870317 1311.72608 1.3652 0.00089673 -0.33911 -0.00022275 1.026 0.00067397 656.8702007024222 98.319 0.10374 92.143 92.072 92.176 -6.1757 11 6 2 0 0 0 0.0045481 1 65206 65206 100.71 80.294 1 29593000 71120 9411 47551 48585 82702 82702 0.08268633424768268 VMLGTQLLYKF 11 Oxidation (M) _VM(Oxidation (M))LGTQLLYKF_ VM(1)LGTQLLYKF VM(86)LGTQLLYKF 0 0 1 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000560710.1_1_15:79184565-79186592:+|nuORF;ENST00000525966.1_1_11:14695245-14695548:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MSMS AL20221201_MKP_PDAC_01 4 664.8681030273438 2 664.867774 1327.72099 NaN NaN NaN NaN NaN NaN NaN 93.243 1 87.067 86.567 87.567 -6.1757 0 0 0 0.00039893 1 61706 61706 85.764 60.883 1 71121 9411 47551 48586 82703 82703 1551 0.070243295621367 VMLLNWFF 8 Unmodified _VMLLNWFF_ 0 0 0 REV__ENST00000534336.1_1_11:65268195-65268336:+|nuORF REV__ENST00000534336.1_1_11:65268195-65268336:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8087768554688 2 535.280606 1068.54666 0.65901 0.00035276 0.46081 0.00024666 1.1198 0.00059942 535.2807169425109 74.522 0.54054 74.047 73.741 74.281 -0.47588 34 19 2 0 0 0 8.7369 1 40631 40631 6.3541 0 1 1930700 + 71122 28498 47552 48587 82704 82704 0.015127939274862001 VMLRLALFKV 10 Unmodified _VMLRLALFKV_ 0 0 0 REV__ENSG00000173080|ENST00000368318|RXFP4 REV__ENSG00000173080|ENST00000368318|RXFP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3809204101562 2 595.378112 1188.74167 -0.74439 -0.00044319 2.4966 0.0014864 1.7522 0.0010432 595.3795786646455 103.02 0.19035 102.98 102.88 103.07 -0.047928 13 7 2 0 0 0 0.72247 1 57205 57205 0.40072 0 1 1380500 + 71123 22702 47553 48588 82705 82705 0.15484964732445405 VMLRLALFKV 10 Unmodified _VMLRLALFKV_ 0 0 0 REV__ENSG00000173080|ENST00000368318|RXFP4 REV__ENSG00000173080|ENST00000368318|RXFP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 595.378112 1188.74167 -0.74439 -0.00044319 2.4966 0.0014864 1.7522 0.0010432 595.3795786646455 103.02 0.19035 102.98 102.88 103.07 -0.047928 0 0 NaN 0.40072 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1380500 + 71124 22702 47553 48588 0.15484964732445405 VMLTLLCGVF 10 Unmodified _VMLTLLCGVF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|9 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8702697753906 3 365.869546 1094.58681 1.0595 0.00038764 0.8812 0.0003224 1.9407 0.00071004 365.86972301885544 26.478 0.41297 23.527 23.261 23.674 -2.9511 33 21 2 0 0 0 0.6606 1 14606 14606 6.6304 0.42459 1 11438000 + 71125 16790 47554 48589 82706 82706 0.043299725357655916 VMLVESWSFK 10 Unmodified _VMLVESWSFK_ 0 0 0 REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2160949707031 3 409.21437 1224.62128 1.1606 0.00047494 1.0607 0.00043407 2.2213 0.000909 409.214897736627 55.599 0.31521 49.678 49.525 49.84 -5.9211 34 18 2 0 0 0 0.5933 1 35370 35370 7.0371 1.2537 1 29163000 + 71126 26047 47555 48590 82707 82707 0.01795511948193962 VMLVESWSFK 10 Unmodified _VMLVESWSFK_ 0 0 0 REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 409.21437 1224.62128 0.70364 0.00028794 4.2411 0.0017355 4.9447 0.0020234 409.2155997541035 49.704 0.11602 49.655 49.549 49.665 -0.048824 -0.011593 0.0038469 NaN 7.0371 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 5060300 + 71127 26047 47555 48590 0.01795511948193962 VMLVESWSFK 10 Unmodified _VMLVESWSFK_ 0 0 0 REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF REV__ENST00000369980.7_2_X:153276977-153277313:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 409.21437 1224.62128 1.1606 0.00047494 1.0607 0.00043407 2.2213 0.000909 409.214897736627 55.599 0.31521 49.678 49.525 49.84 -5.9211 0.011593 -5.7395E-05 NaN 7.0371 34 18 2 NaN NaN NaN NaN 0 NaN NaN 0 29163000 + 71128 26047 47555 48590 0.01795511948193962 VMPKKVFKI 9 Unmodified _VMPKKVFKI_ 0 0 0 ENSG00000103489|ENST00000261381|XYLT1 ENSG00000103489|ENST00000261381|XYLT1 ENSG00000103489|ENST00000261381|XYLT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.9002380371094 3 363.899946 1088.67801 1.4166 0.0005155 -0.23044 -8.3856E-05 1.1862 0.00043164 363.89990221214873 35.561 0.3848 31.369 31.143 31.527 -4.1928 56 23 3 0 0 0 0.091924 1 20588 20588 34.932 30.403 1 27123000 71129 2144 47556 48591 82708 82708 0.13721604295392353 VMPKVVPTL 9 Unmodified _VMPKVVPTL_ 0 0 0 ENSG00000157741|ENST00000473989|UBN2;nc|ENSG00000157741|Q6ZU65-2|UBN2 ENSG00000157741|ENST00000473989|UBN2 ENSG00000157741|ENST00000473989|UBN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.7040405273438 2 492.301539 982.588524 1.4263 0.00070215 -3.4844 -0.0017154 -2.0581 -0.0010132 492.29960653250447 64.22 0.19727 58.044 57.935 58.132 -6.1757 11 9 2 0 0 0 0.1325 1 41571 41571 25.399 18.11 1 7422800 71130 6536 47557 48592 82709 82709 0.09653349616019113 VMPPFILI 8 Unmodified _VMPPFILI_ 0 0 0 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 REV__nc|ENSG00000095981|Q96T55-5|KCNK16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2802734375 2 465.280075 928.545597 0.17429 8.1094E-05 0.16919 7.8719E-05 0.34348 0.00015981 465.2800120749506 76.456 0.75534 76.504 76.299 77.054 0.047951 62 31 3 0 0 0 0.81107 1 42358 42358 0 0 1 7993300 + 71131 16815 47558 48593 82710 82710 0.07846579558599842 VMPRRLWVM 9 Unmodified _VMPRRLWVM_ 0 0 0 nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF nc|ENSG00000108506|Q9H0H0|INTS2 nc|ENSG00000108506|Q9H0H0|INTS2 MSMS AL20221201_MKP_PDAC_01 4 396.5567626953125 3 396.556185 1186.64672 NaN NaN NaN NaN NaN NaN NaN 86.881 1 80.705 80.205 81.205 -6.1757 0 0 0 0.33856 1 57277 57277 27.629 18.085 1 71132 2576 47559 48594 82711 82711 0.06086707989629758 VMPSSFFLL 9 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ VM(1)PSSFFLL VM(54)PSSFFLL 0 0 1 ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7757568359375 2 528.775354 1055.53615 4.3318 0.0022906 -1.978 -0.0010459 2.3538 0.0012446 528.7742518347023 99.069 0.26888 99.041 98.92 99.189 -0.028282 24 9 4 0 0 0 0.03327 1 55033 55033 53.576 19.473 1 11471000 71133 5468 47560 48595 82712 82712 1007 0.010607664823965024 VMPSSFFLL 9 Oxidation (M) _VM(Oxidation (M))PSSFFLL_ VM(1)PSSFFLL VM(44)PSSFFLL 0 0 1 ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.77587890625 2 528.775354 1055.53615 1.5816 0.00083631 -1.1356 -0.0006005 0.44596 0.00023581 528.7747641365661 100.93 0.14839 94.759 94.701 94.85 -6.1757 24 8 4 0 0 0 0.052168 1 67637 67637 44.407 15.92 1 123090000 71134 5468 47560 48595 82713 82713 1007 0.010607664823965024 VMPSSFFLL 9 Unmodified _VMPSSFFLL_ 0 0 0 ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL ENSG00000143155|ENST00000367833|TIPRL MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.77880859375 2 520.777896 1039.54124 0.87157 0.0004539 -0.55395 -0.00028848 0.31763 0.00016541 520.778029548816 101.61 0.25035 95.434 95.274 95.524 -6.1757 25 12 3 0 0 0 0.052168 1 68190 68190 44.407 8.3628 1 79632000 71135 5468 47560 48596 82714 82714 0.023050703450280707 VMPVIVLPLI 10 Unmodified _VMPVIVLPLI_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3563232421875 2 547.356314 1092.69807 NaN NaN NaN NaN NaN NaN NaN 15.002 1 15.008 14.508 15.508 0.0057774 0 0 0 1.0061 1 7460 7460 0 0 1 + 71136 23848 47561 48597 82715 82715 0.15543355235354284 VMPWFCQQL 9 Unmodified _VMPWFCQQL_ 0 0 0 REV__ENST00000342785.8_2_5:82816463-82816505:+|nuORF REV__ENST00000342785.8_2_5:82816463-82816505:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7262573242188 2 576.272455 1150.53036 0.58402 0.00033655 -0.55258 -0.00031844 0.031437 1.8116E-05 576.2720578585527 87.553 0.88803 87.049 86.42 87.308 -0.50423 94 38 4 0 0 0 0.21798 1 47744 47744 2.3027 0.24298 1 5597400 + 71137 25726 47562 48598 82716 82716 -0.03888655300920618 VMQVSTSPLY 10 Unmodified _VMQVSTSPLY_ 0 0 0 ENST00000476966.5_1_1:156383111-156383222:-|nuORF ENST00000476966.5_1_1:156383111-156383222:-|nuORF ENST00000476966.5_1_1:156383111-156383222:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2886352539062 2 562.78645 1123.55835 1.4237 0.00080125 -0.12851 -7.2325E-05 1.2952 0.00072892 562.7851082445749 53.915 0.58521 48.05 47.754 48.339 -5.8653 102 33 4 0 0 0 0.23548 1 34009 34009 31.268 1.4278 1 127630000 71138 13992 47563 48599 82717 82717 0.001509461601926887 VMQWFGGSESE 11 Unmodified _VMQWFGGSESE_ 0 0 0 REV__ENST00000336452.11_1_17:7215456-7215537:+|nuORF REV__ENST00000336452.11_1_17:7215456-7215537:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.7647705078125 2 628.766245 1255.51794 -0.44643 -0.0002807 -3.6798 -0.0023138 -4.1263 -0.0025944 628.7649120417591 26.71 0.2097 26.71 26.614 26.824 0 24 9 4 0 0 0 0.65846 1 13738 13738 8.1555 0.54658 1 1674400 + 71139 25647 47564 48600 82718 82718 -0.09960020230255395 VMRKYRPI 8 Oxidation (M) _VM(Oxidation (M))RKYRPI_ VM(1)RKYRPI VM(40)RKYRPI 0 0 1 REV__ENSG00000164050|ENST00000296440|PLXNB1 REV__ENSG00000164050|ENST00000296440|PLXNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8126831054688 2 539.813136 1077.61172 0.53748 0.00029014 2.1039 0.0011357 2.6414 0.0014259 539.8142680259928 67.665 2.0741 61.49 60.748 62.822 -6.1757 252 118 3 0 0 0 0.44122 1 44133 44133 40.449 40.449 1 187790000 + 71140 21855 47565 48601 82719 82719 1848 0.07601788453325753 VMSATFAKF 9 Oxidation (M) _VM(Oxidation (M))SATFAKF_ VM(1)SATFAKF VM(60)SATFAKF 0 0 1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2576293945312 2 509.257328 1016.5001 NaN NaN NaN NaN NaN NaN NaN 44.624 1 44.308 43.808 44.808 -0.31585 0 0 0 0.044471 1 23814 23814 60.074 17.979 1 71141 1216 47566 48602 82720 82720 205 -0.007486906944563998 VMSATFAKF 9 Oxidation (M) _VM(Oxidation (M))SATFAKF_ VM(1)SATFAKF VM(44)SATFAKF 0 0 1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2574462890625 2 509.257328 1016.5001 NaN NaN NaN NaN NaN NaN NaN 44.811 1 44.495 43.995 44.995 -0.31585 0 0 0 0.098496 1 23917 23917 43.772 16.889 1 71142 1216 47566 48602 82721 82721 205 -0.007486906944563998 VMSATFAKF 9 Oxidation (M) _VM(Oxidation (M))SATFAKF_ VM(1)SATFAKF VM(60)SATFAKF 0 0 1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2577209472656 2 509.257328 1016.5001 0.2834 0.00014432 0.11359 5.7848E-05 0.39699 0.00020217 509.25716372407516 44.264 0.19371 44.242 44.172 44.366 -0.022064 13 9 2 0 0 0 0.023481 1 23750 23750 60.074 17.979 1 8598700 71143 1216 47566 48602 82722 82722 205 -0.007486906944563998 VMSATFAKF 9 Oxidation (M) _VM(Oxidation (M))SATFAKF_ VM(1)SATFAKF VM(60)SATFAKF 0 0 1 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2571105957031 2 509.257328 1016.5001 0.20048 0.0001021 -0.2266 -0.0001154 -0.026117 -1.33E-05 509.25729395456744 44.495 0.16082 44.473 44.366 44.526 -0.022068 13 7 2 0 0 0 0.023481 1 23848 23848 60.074 17.979 1 7736800 71144 1216 47566 48602 82723 82723 205 -0.007486906944563998 VMSDRSWF 8 Unmodified _VMSDRSWF_ 0 0 0 nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN;nc|ENSG00000130518|Q9H0B3-3|IQCN;ENST00000599638.2_1_19:18367992-18369432:-|nuORF nc|ENSG00000130518|Q9H0B3-5|IQCN nc|ENSG00000130518|Q9H0B3-5|IQCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2369384765625 2 514.236927 1026.4593 NaN NaN NaN NaN NaN NaN NaN 97.601 1 97.359 96.859 97.859 -0.24277 0 0 0 0.97444 1 53296 53296 0.79363 0 1 71145 4219 47567 48603 82724 82724 -0.05287032014075521 VMSQALKATF 10 Oxidation (M) _VM(Oxidation (M))SQALKATF_ VM(1)SQALKATF VM(98)SQALKATF 0 0 1 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.2947998046875 2 556.294442 1110.57433 0.16977 9.4441E-05 0.030842 1.7157E-05 0.20061 0.0001116 556.2946085257806 39.548 0.40238 39.251 39.029 39.431 -0.29716 60 18 4 0 0 0 0.0052757 2 20796 20796;20904 97.741 67.516 1 46195000 71146 6528 47568 48604 82725;82726 82725 1141 0.02346652397022808 VMSQALKATF 10 Oxidation (M) _VM(Oxidation (M))SQALKATF_ VM(1)SQALKATF VM(110)SQALKATF 0 0 1 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.295654296875 2 556.294442 1110.57433 0.47815 0.00026599 0.85487 0.00047556 1.333 0.00074155 556.295080947192 39.16 0.38585 39.171 39.001 39.387 0.011456 53 17 4 0 0 0 0.00083333 2 20895 20799;20895 114.5 74.257 1 17189000 71147 6528 47568 48604 82727;82728 82728 1141 0.02346652397022808 VMSQALKATF 10 Unmodified _VMSQALKATF_ 0 0 0 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 ENSG00000157557|ENST00000360938|ETS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2969360351562 2 548.296985 1094.57942 0.59114 0.00032412 -0.51922 -0.00028469 0.071911 3.9429E-05 548.2965929043945 53.139 0.62434 47.335 47.104 47.729 -5.8042 112 37 4 0 0 0 0.036372 2 33518 33518;33645 64.927 49.08 1 266020000 71148 6528 47568 48605 82729;82730 82729 0.035909562596543765 VMSRVFLIW 9 Unmodified _VMSRVFLIW_ 0 0 0 ENSG00000206527|ENST00000383657|HACD2 ENSG00000206527|ENST00000383657|HACD2 ENSG00000206527|ENST00000383657|HACD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.8245239257812 2 575.825712 1149.63687 0.58041 0.00033422 -0.10738 -6.1835E-05 0.47303 0.00027238 575.8253052590105 99.896 0.11649 93.721 93.664 93.78 -6.1757 17 8 3 0 0 0 0.029718 1 66682 66682 55.503 4.6477 1 38878000 71149 10399 47569 48606 82731 82731 0.06803843255920583 VMSWIIPVF 9 Oxidation (M) _VM(Oxidation (M))SWIIPVF_ VM(1)SWIIPVF VM(64)SWIIPVF 0 0 1 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.298828125 2 554.298996 1106.58344 -0.028248 -1.5658E-05 -0.57923 -0.00032106 -0.60747 -0.00033672 554.2985108628974 101.06 0.1125 101.02 100.95 101.06 -0.04216 10 3 4 0 0 0 0.019979 1 56162 56162 63.563 35.076 1 16743000 71150 2120 47570 48607 82732 82732 369 0.0344104575340225 VMSWIIPVF 9 Unmodified _VMSWIIPVF_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3031616210938 2 546.301539 1090.58852 0.89266 0.00048766 0.29394 0.00016058 1.1866 0.00064824 546.30206235665 102.29 0.086067 96.114 96.072 96.158 -6.1757 10 4 3 0 0 0 0.019979 1 68659 68659 63.563 19.705 1 15241000 71151 2120 47570 48608 82733 82733 0.04685349616011081 VMTGSYNNF 9 Oxidation (M) _VM(Oxidation (M))TGSYNNF_ VM(1)TGSYNNF VM(44)TGSYNNF 0 0 1 ENSG00000221914|ENST00000380737|PPP2R2A;nc|ENSG00000221914|P63151-2|PPP2R2A;ENST00000517754.1_1_8:26221160-26227926:+|nuORF ENSG00000221914|ENST00000380737|PPP2R2A ENSG00000221914|ENST00000380737|PPP2R2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.723388671875 2 524.723849 1047.43315 1.3786 0.00072339 -1.9769 -0.0010373 -0.59825 -0.00031392 524.7225369909107 41.933 0.4401 37.302 37.054 37.494 -4.6306 59 27 3 0 0 0 0.05447 1 25210 25210 43.858 18.459 1 14991000 71152 10558 47571 48609 82734 82734 1698 -0.08867345976250363 VMTHLTSDR 9 Unmodified _VMTHLTSDR_ 0 0 0 ENST00000276410.6_1_8:42623727-42623886:-|nuORF ENST00000276410.6_1_8:42623727-42623886:-|nuORF ENST00000276410.6_1_8:42623727-42623886:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2659912109375 2 530.266216 1058.51788 0.40049 0.00021237 -1.145 -0.00060718 -0.74455 -0.00039481 530.2653767091952 84.54 0.45328 78.364 78.05 78.503 -6.1757 37 25 2 0 0 0 0.30562 1 55647 55647 16.942 0 1 21284000 71153 11393 47572 48610 82735 82735 -0.009039754396326316 VMVELEALLPP 11 Unmodified _VMVELEALLPP_ 0 0 0 ENSG00000049769|ENST00000055335|PPP1R3F ENSG00000049769|ENST00000055335|PPP1R3F ENSG00000049769|ENST00000055335|PPP1R3F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8978271484375 3 404.229909 1209.6679 0.97301 0.00039332 1.8463 0.00074634 2.8193 0.0011397 404.2311764694591 49.926 0.16309 49.877 49.784 49.947 -0.048828 9 7 2 0 0 0 0.7326 1 27014 27014 0.40827 0 1 878570 71154 715 47573 48611 82736 82736 0.07144951779491748 VMVPHILKR 9 Unmodified _VMVPHILKR_ 0 0 0 REV__ENST00000337014.10_2_17:80398960-80400257:+|nuORF REV__ENST00000337014.10_2_17:80398960-80400257:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.896240234375 3 364.895195 1091.66375 1.478 0.0005393 1.3048 0.0004761 2.7827 0.0010154 364.8956052424389 92.538 0.44136 92.569 92.389 92.83 0.030197 23 16 2 0 0 0 0.61256 1 51429 51429 0.26902 0 1 3765000 + 71155 22413 47574 48612 82737 82737 0.12158951867127143 VMVYLDPMAV 10 Unmodified _VMVYLDPMAV_ 0 0 0 ENST00000557555.1_3_12:56079014-56082669:-|nuORF;nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7 ENST00000557555.1_3_12:56079014-56082669:-|nuORF ENST00000557555.1_3_12:56079014-56082669:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.8624877929688 3 379.860939 1136.56099 NaN NaN NaN NaN NaN NaN NaN 24.355 1 21.528 21.028 22.028 -2.8273 0 0 0 0.92825 1 13254 13254 3.5871 0.5148 1 71156 4704 47575 48613 82738 82738 -0.0018292170655058726 VNAEVTPVF 9 Unmodified _VNAEVTPVF_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.259765625 2 488.260925 974.507297 0.083453 4.0747E-05 0.1608 7.8511E-05 0.24425 0.00011926 488.2609308005336 70.151 0.2545 70.151 70.053 70.308 0 24 19 2 0 0 0 0.14 1 39075 39075 29.082 29.082 1 1859900 + 71157 19174 47576 48614 82739 82739 0.01902365177613774 VNAEVTPVF 9 Unmodified _VNAEVTPVF_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2600402832031 2 488.260925 974.507297 0.4562 0.00022274 -0.58298 -0.00028464 -0.12678 -6.1902E-05 488.2604541997282 70.643 0.21155 70.166 70.097 70.308 -0.47735 19 14 2 0 0 0 0.14 1 38634 38634 29.082 2.1979 1 2011700 + 71158 19174 47576 48614 82740 82740 0.01902365177613774 VNAEVTPVF 9 Unmodified _VNAEVTPVF_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.260925 974.507297 0.083453 4.0747E-05 0.1608 7.8511E-05 0.24425 0.00011926 488.2609308005336 70.151 0.2545 70.151 70.053 70.308 0 -0.0074616 0.00040919 NaN 29.082 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1859900 + 71159 19174 47576 48614 0.01902365177613774 VNAEVTPVF 9 Unmodified _VNAEVTPVF_ 0 0 0 REV__ENSG00000118946|ENST00000377918|PCDH17 REV__ENSG00000118946|ENST00000377918|PCDH17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 488.260925 974.507297 0.4562 0.00022274 -0.58298 -0.00028464 -0.12678 -6.1902E-05 488.2604541997282 70.643 0.21155 70.166 70.097 70.308 -0.47735 0.0074616 -0.00031713 NaN 29.082 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2011700 + 71160 19174 47576 48614 0.01902365177613774 VNAGRKPQA 9 Unmodified _VNAGRKPQA_ 0 0 0 ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENSG00000196526|ENST00000420658|AFAP1;ENST00000505447.5_1_4:7765494-7780765:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF ENST00000513842.1_1_4:7765494-7800689:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7728576660156 2 470.769783 939.525013 0.52548 0.00024738 -0.71777 -0.00033791 -0.19229 -9.0526E-05 470.7691495153984 67.021 0.54518 67.039 66.713 67.258 0.018028 63 26 3 0 0 0 0.5029 1 36697 36697 7.2892 0 1 11218000 71161 9833 47577 48615 82741 82741 0.05283125223127172 VNAKRGDERI 10 Unmodified _VNAKRGDERI_ 0 0 0 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2175598144531 3 386.551033 1156.63127 1.2361 0.00047781 1.0419 0.00040275 2.278 0.00088056 386.5514461330947 50.289 0.76701 50.24 49.827 50.594 -0.048824 61 37 2 0 0 0 0.23745 1 27251 27251 0.50596 0 1 9893700 + 71162 20944 47578 48616 82742 82742 0.05921835997787639 VNANANNT 8 Unmodified _VNANANNT_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S REV__ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 817.3795166015625 1 817.379871 816.372594 -0.0027979 -2.287E-06 -0.25347 -0.00020718 -0.25627 -0.00020947 817.3799944332421 102.67 0.069374 102.67 102.63 102.7 0 4 2 2 0 0 0 0.81107 1 56627 56627 0 0 1 225700 + 71163 17689 47579 48617 82743 82743 -0.04293695244302853 VNARKIKK 8 Unmodified _VNARKIKK_ 0 0 0 ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A ENSG00000104941|ENST00000221538|RSPH6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.8214111328125 2 478.821818 955.629084 -0.58098 -0.00027818 0.54865 0.0002627 -0.032329 -1.548E-05 478.8220056458022 103.11 0.37668 103.06 102.88 103.26 -0.04792 26 15 2 0 0 0 0.80992 1 57347 57347 0.69038 0 1 1573200 71164 2260 47580 48618 82744 82744 0.14949452050655054 VNATFPVA 8 Unmodified _VNATFPVA_ 0 0 0 ENST00000528821.5_1_12:16109876-16185684:+|nuORF;ENSG00000023697|ENST00000428559|DERA ENST00000528821.5_1_12:16109876-16185684:+|nuORF ENST00000528821.5_1_12:16109876-16185684:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 818.4412841796875 1 818.44068 817.433404 0.92115 0.00075391 -0.19177 -0.00015695 0.72938 0.00059695 818.4405880356933 41.218 0.28725 36.61 36.416 36.703 -4.6079 28 17 2 0 0 0 0.57045 1 24762 24762 28.487 3.813 1 10299000 71165 545 47581 48619 82745 82745 0.017384418059350537 VNDDRHVM 8 Oxidation (M) _VNDDRHVM(Oxidation (M))_ VNDDRHVM(1) VNDDRHVM(69) 0 0 1 nc|ENSG00000129351|Q12906-5|ILF3;nc|ENSG00000129351|Q12906-4|ILF3;nc|ENSG00000129351|Q12906-2|ILF3;nc|ENSG00000129351|Q12906-6|ILF3;nc|ENSG00000129351|Q12906-3|ILF3;nc|ENSG00000129351|Q12906|ILF3;ENSG00000129351|ENST00000588657|ILF3;ENST00000587928.5_1_19:10781281-10792148:+|nuORF nc|ENSG00000129351|Q12906-5|ILF3 nc|ENSG00000129351|Q12906-5|ILF3 MSMS AL20221201_MKP_PDAC_01 4 501.2267761230469 2 501.227091 1000.43963 NaN NaN NaN NaN NaN NaN NaN 17.882 1 15.295 14.795 15.795 -2.5866 0 0 0 0.26064 1 9387 9387 69.105 30.954 1 71166 4131 47582 48620 82746 82746 735 -0.060574080248329665 VNDNDEDL 8 Unmodified _VNDNDEDL_ 0 0 0 REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF REV__ENST00000445692.5_1_2:68762461-68805151:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.1933898925781 2 467.193436 932.37232 0.7549 0.00035269 -0.84126 -0.00039303 -0.086356 -4.0345E-05 467.1929339759259 53.306 0.68751 53.306 52.958 53.645 0 50 31 2 0 0 0 0.80975 2 29452 29452;29570 0.79363 0 1 3105700 + 71167 22411 47583 48621 82747;82748 82747 -0.09657159754817712 VNDPRPQHKY 10 Unmodified _VNDPRPQHKY_ 0 0 0 ENSG00000108578|ENST00000261714|BLMH;ENST00000577306.1_1_17:28599577-28599908:-|nuORF ENSG00000108578|ENST00000261714|BLMH ENSG00000108578|ENST00000261714|BLMH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.3214721679688 2 627.322911 1252.63127 0.20815 0.00013058 -0.95775 -0.00060082 -0.7496 -0.00047024 627.3224096976412 39.783 0.2114 39.783 39.681 39.892 0 21 10 3 0 0 0 0.70895 1 21355 21355 3.9444 2.2918 1 1849200 71168 2583 47584 48622 82749 82749 0.01505835997795657 VNDPRPQHKY 10 Unmodified _VNDPRPQHKY_ 0 0 0 ENSG00000108578|ENST00000261714|BLMH;ENST00000577306.1_1_17:28599577-28599908:-|nuORF ENSG00000108578|ENST00000261714|BLMH ENSG00000108578|ENST00000261714|BLMH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.322911 1252.63127 0.1921 0.00012051 -1.0378 -0.00065105 -0.84572 -0.00053054 627.322583888709 40.178 0.12049 39.88 39.843 39.963 -0.29716 0.048544 -8.3351E-05 NaN 3.9444 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 980990 71169 2583 47584 48622 0.01505835997795657 VNDVTLTL 8 Unmodified _VNDVTLTL_ 0 0 0 REV__ENSG00000145332|ENST00000273963|KLHL8 REV__ENSG00000145332|ENST00000273963|KLHL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 874.4838256835938 1 874.488024 873.480748 1.3227 0.0011567 -1.2364 -0.0010812 0.086241 7.5416E-05 874.4863847553481 59.104 0.62943 53.03 52.598 53.228 -6.0745 52 34 2 0 0 0 0.71527 1 37618 37618 15.847 4.2069 1 24927000 + 71170 20767 47585 48623 82750 82750 0.03894676286279264 VNEAAPEKPQ 10 Unmodified _VNEAAPEKPQ_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-6|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.777099609375 2 541.77747 1081.54039 -1.0278 -0.00055685 -0.19179 -0.00010391 -1.2196 -0.00066076 541.7772894639078 32.595 0.27166 32.595 32.481 32.753 0 37 14 4 0 0 0 0.65471 1 17041 17041 13.042 7.282 1 14685000 71171 4011 47586 48624 82751 82751 0.0028794722966267727 VNEAAPEKPQ 10 Unmodified _VNEAAPEKPQ_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-6|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7775268554688 2 541.77747 1081.54039 -0.41717 -0.00022601 0.10791 5.8463E-05 -0.30926 -0.00016755 541.7777269677181 32.64 0.28205 32.511 32.37 32.652 -0.12915 26 11 3 0 0 0 0.59286 1 17024 17024 13.042 13.042 1 4636100 71172 4011 47586 48624 82752 82752 0.0028794722966267727 VNEAAPEKPQ 10 Unmodified _VNEAAPEKPQ_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-6|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 541.77747 1081.54039 -1.0278 -0.00055685 -0.19179 -0.00010391 -1.2196 -0.00066076 541.7772894639078 32.595 0.27166 32.595 32.481 32.753 0 0.041844 -0.00016278 NaN 13.042 37 14 4 NaN NaN NaN NaN 0 NaN NaN 0 14685000 71173 4011 47586 48624 0.0028794722966267727 VNEAAPEKPQ 10 Unmodified _VNEAAPEKPQ_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-6|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.77747 1081.54039 -0.41717 -0.00022601 0.10791 5.8463E-05 -0.30926 -0.00016755 541.7777269677181 32.64 0.28205 32.511 32.37 32.652 -0.12915 -0.041844 0.00016196 NaN 13.042 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4636100 71174 4011 47586 48624 0.0028794722966267727 VNEIQCFA 8 Unmodified _VNEIQCFA_ 0 0 0 REV__ENSG00000164066|ENST00000335251|INTU REV__ENSG00000164066|ENST00000335251|INTU MSMS AL20221201_MKP_PDAC_01 4 462.2175598144531 2 462.218203 922.421853 NaN NaN NaN NaN NaN NaN NaN 78.207 1 72.032 71.532 72.532 -6.1757 0 0 0 0.94494 1 51182 51182 11.64 2.2929 1 + 71175 21858 47587 48625 82753 82753 -0.04246123279699532 VNELLVDNKAV 11 Unmodified _VNELLVDNKAV_ 0 0 0 STAB2|p.A430V|1|0.04|ENSG00000136011|chr12:103652587-103652587|C/T|missense_variant STAB2|p.A430V|1|0.04|ENSG00000136011|chr12:103652587-103652587|C/T|missense_variant STAB2|p.A430V|1|0.04|ENSG00000136011|chr12:103652587-103652587|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2317504882812 3 405.231077 1212.6714 NaN NaN NaN NaN NaN NaN NaN 70.035 1 70.035 69.535 70.535 0 0 0 0 0.63856 1 39019 39019 11.631 3.1871 1 71176 30175 47588 48626 82754 82754 0.07357337877715509 VNEVAILSL 9 Unmodified _VNEVAILSL_ 0 0 0 ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 957.5609741210938 1 957.561524 956.554247 0.63201 0.00060519 -0.54153 -0.00051855 0.09048 8.664E-05 957.5608685982249 70.047 0.42201 70.078 69.864 70.286 0.031029 60 21 4 0 0 0 0.0094097 2 38460 38460;38580 82.529 10.607 1 51512000 71177 13584 47589 48627 82755;82756 82755 0.07423224728779587 VNEVAILSL 9 Unmodified _VNEVAILSL_ 0 0 0 ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 957.5625610351562 1 957.561524 956.554247 0.23665 0.00022661 -0.15697 -0.00015031 0.07968 7.6299E-05 957.5612870597183 78.404 1.5672 72.228 71.668 73.235 -6.1757 283 91 4 0 0 0 0.0082475 5 51109 51109;51229;51488;51868;52004 92.653 10.763 1 1155700000 71178 13584 47589 48627 82757;82758;82759;82760;82761 82757 0.07423224728779587 VNEVAILSL 9 Unmodified _VNEVAILSL_ 0 0 0 ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 957.561524 956.554247 -0.16657 -0.0001595 -1.1488 -0.0011001 -1.3154 -0.0012596 957.5603417597765 70.019 0.87012 70.019 69.816 70.686 0 -0.012533 -2.1659E-05 NaN 82.529 248 71 4 NaN NaN NaN NaN 0 NaN NaN 0 267410000 71179 13584 47589 48627 0.07423224728779587 VNEVAILSL 9 Unmodified _VNEVAILSL_ 0 0 0 ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF ENST00000455385.6_1_7:105731299-105731344:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 957.561524 956.554247 0.14926 0.00014293 -1.3506 -0.0012933 -1.2014 -0.0011504 957.5600993902762 70.474 1.251 69.997 69.821 71.072 -0.47735 -0.034244 -0.00021491 NaN 82.529 208 73 5 NaN NaN NaN NaN 0 NaN NaN 0 412190000 71180 13584 47589 48627 0.07423224728779587 VNEVSRALL 9 Unmodified _VNEVSRALL_ 0 0 0 nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|Q9UPN3|MACF1 MSMS AL20221201_MKP_PDAC_01 4 500.7915344238281 2 500.792924 999.571294 NaN NaN NaN NaN NaN NaN NaN 73.113 1 66.937 66.437 67.437 -6.1757 0 0 0 0.20976 1 47821 47821 29.841 0 1 71181 4022;16177 47590 48628 82762 82762 0.07149145334562945 VNFANHIV 8 Unmodified _VNFANHIV_ 0 0 0 REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|75|1|anti-sense REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|75|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2480773925781 2 457.248152 912.481751 0.48513 0.00022182 -0.33669 -0.00015395 0.14844 6.7872E-05 457.24811112161564 26.921 0.23992 26.95 26.824 27.064 0.028664 15 10 2 0 0 0 0.67481 1 13982 13982 19.439 1.304 1 17539000 + 71182 29419 47591 48629 82763 82763 0.02200935445853247 VNFANHIV 8 Unmodified _VNFANHIV_ 0 0 0 REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|75|1|anti-sense REV__L1ME1_dup27121|chr16:88181815-88183773:+|1.4743153209444044|0.1398476319207532|3.4|177.0|75|1|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2489318847656 2 457.248152 912.481751 1.174 0.00053681 -0.19336 -8.8414E-05 0.98065 0.0004484 457.2480111344133 30.653 0.49802 27.156 26.915 27.413 -3.497 73 23 4 0 0 0 0.5953 1 17237 17237 26.341 1.6674 1 479390000 + 71183 29419 47591 48629 82764 82764 0.02200935445853247 VNFEAKDFL 9 Unmodified _VNFEAKDFL_ 0 0 0 nc|ENSG00000167535|P54284-2|CACNB3;nc|ENSG00000167535|P54284-3|CACNB3;nc|ENSG00000167535|P54284-4|CACNB3;ENSG00000167535|ENST00000301050|CACNB3;ENST00000547693.5_1_12:49207611-49217616:+|nuORF;ENST00000551716.5_1_12:49209469-49217616:+|nuORF;ENST00000550771.5_1_12:49212712-49217616:+|nuORF;ENST00000548860.5_1_12:49211034-49218554:+|nuORF;ENST00000549226.5_1_12:49208294-49218554:+|nuORF nc|ENSG00000167535|P54284-2|CACNB3 nc|ENSG00000167535|P54284-2|CACNB3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2503051757812 2 541.779482 1081.54441 0.17315 9.3807E-05 -3.3208 -0.0017992 -3.1477 -0.0017054 541.7792342469235 77.649 0.21623 77.699 77.558 77.774 0.05011 13 8 2 0 0 0 0.19613 1 42831 42831 7.9102 0 1 1948300 71184 7626 47592 48630 82765 82765 0.0069003672338112665 VNFEKMRMIA 10 Unmodified _VNFEKMRMIA_ 0 0 0 nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4 nc|ENSG00000091428|Q8WZA2-2|RAPGEF4 nc|ENSG00000091428|Q8WZA2-2|RAPGEF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5496215820312 3 413.550988 1237.63113 -0.39421 -0.00016303 -0.77084 -0.00031878 -1.1651 -0.00048181 413.5506086061027 22.884 0.22432 22.884 22.832 23.056 0 19 12 2 0 0 0 0.69377 1 11657 11657 1.7423 0 1 1510700 71185 1585 47593 48631 82766 82766 0.02182376681957976 VNFFRPFTRFL 11 Unmodified _VNFFRPFTRFL_ 0 0 0 ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C ENSG00000174173|ENST00000309922|TRMT10C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2700500488281 3 481.934706 1442.78229 -0.4062 -0.00019576 1.7894 0.00086237 1.3832 0.0006666 481.9356377277802 15.083 0.054603 15.083 15.058 15.113 0 26 15 3 0 0 0 0.73992 1 7233 7233 0.50596 0.34663 1 470360 71186 8397 47594 48632 82767 82767 0.07861022376459914 VNFHMFDVG 9 Unmodified _VNFHMFDVG_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2455444335938 2 533.244752 1064.47495 0.14634 7.8035E-05 0.25842 0.0001378 0.40476 0.00021584 533.2449574373949 76.738 0.27769 76.788 76.656 76.934 0.05011 27 11 3 0 0 0 0.2143 1 42339 42339 21.747 12.364 1 4819300 71187 16063;14003 47595 48633 82768 82768 -0.0547074549701847 VNFHMFDVG 9 Unmodified _VNFHMFDVG_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;nc|ENSG00000141404|P38405|GNAL;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2454833984375 2 533.244752 1064.47495 0.41653 0.00022211 -0.033522 -1.7875E-05 0.38301 0.00020424 533.2447675049269 78.66 0.30905 78.712 78.576 78.885 0.052452 27 11 3 0 0 0 0.32871 1 43439 43439 15.847 7.937 1 5224600 71188 16063;14003 47595 48633 82769 82769 -0.0547074549701847 VNFMDKWGS 9 Unmodified _VNFMDKWGS_ 0 0 0 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.25 2 542.250034 1082.48552 0.27453 0.00014887 -0.17509 -9.4945E-05 0.099439 5.3921E-05 542.2500699539846 87.58 0.47855 87.076 86.855 87.334 -0.50423 74 21 5 0 0 0 0.25681 2 47860 47860;47957 19.257 5.3509 1 13152000 + 71189 24672 47596 48634 82770;82771 82770 -0.05242762842613047 VNFMDKWGS 9 Unmodified _VNFMDKWGS_ 0 0 0 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2503051757812 2 542.250034 1082.48552 0.17207 9.3303E-05 -0.045256 -2.454E-05 0.12681 6.8763E-05 542.2501001854272 77.649 0.28868 77.699 77.486 77.774 0.05011 32 11 4 0 0 0 0.36964 1 42831 42831 13.906 4.5229 1 10288000 + 71190 24672 47596 48634 82772 82772 -0.05242762842613047 VNFMDKWGS 9 Unmodified _VNFMDKWGS_ 0 0 0 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 REV__nc|ENSG00000278535|Q6UWP2-2|DHRS11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.250034 1082.48552 0.2243 0.00012163 0.48851 0.00026489 0.71281 0.00038652 542.2504699623358 87.077 0.23389 87.077 86.953 87.187 0 0.00074659 0.00051842 NaN 19.257 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 560210 + 71191 24672 47596 48634 -0.05242762842613047 VNFNDMSTSL 10 Unmodified _VNFNDMSTSL_ 0 0 0 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.25341796875 2 564.255514 1126.49647 0.61281 0.00034578 -0.33407 -0.0001885 0.27874 0.00015728 564.2557335881011 59.914 0.28725 59.914 59.736 60.023 0 23 13 2 0 0 0 0.46514 1 33362 33362 18.146 4.2403 1 2754100 + 71192 22472 47597 48635 82773 82773 -0.06171405258965024 VNHNLTEKL 9 Unmodified _VNHNLTEKL_ 0 0 0 nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.2946166992188 2 534.29583 1066.57711 0.14232 7.6039E-05 0.58674 0.00031349 0.72906 0.00038953 534.2958212967077 76.807 0.33369 76.857 76.676 77.01 0.050102 26 13 3 0 0 0 0.39863 1 42353 42353 12.532 0 1 2613900 71193 8679 47598 48636 82774 82774 0.04648243846236255 VNHNLTEKL 9 Unmodified _VNHNLTEKL_ 0 0 0 nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 nc|ENSG00000177398|Q5DID0-3|UMODL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.29583 1066.57711 -0.5234 -0.00027965 1.268 0.00067749 0.74461 0.00039784 534.2974083002474 77.277 0.57076 76.795 76.385 76.956 -0.4826 -0.031308 0.00042322 NaN 12.532 44 25 3 NaN NaN NaN NaN 0 NaN NaN 0 1969100 71194 8679 47598 48636 0.04648243846236255 VNIARKKRIP 10 Unmodified _VNIARKKRIP_ 0 0 0 nc|ENSG00000100167|Q9UH03-2|SEPTIN3;nc|ENSG00000100167|Q9UH03|SEPTIN3;ENSG00000100167|ENST00000644076|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 nc|ENSG00000100167|Q9UH03-2|SEPTIN3 MSMS AL20221201_MKP_PDAC_01 4 597.8916015625 2 597.893306 1193.77206 NaN NaN NaN NaN NaN NaN NaN 108.62 1 102.44 101.94 102.94 -6.1757 0 0 0 1.0024 1 72585 72585 0.40072 0.40072 1 71195 1764 47599 48637 82775 82775 0.18292459441886422 VNICSGDQLF 10 Unmodified _VNICSGDQLF_ 0 0 0 REV__KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant REV__KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2622680664062 2 548.260599 1094.50665 2.1487 0.0011781 0.34685 0.00019017 2.4956 0.0013682 548.2606267764608 95.342 0.37357 95.346 95.158 95.532 0.004158 25 13 3 0 0 0 0.62068 1 52988 52988 10.074 0.72649 1 1725000 + 71196 19260 47600 48638 82776 82776 -0.03682797533747362 VNILHRLLK 9 Unmodified _VNILHRLLK_ 0 0 0 ENSG00000185894|ENST00000382287|BPY2C;ENSG00000183795|ENST00000382392|BPY2B;ENSG00000183753|ENST00000331070|BPY2 ENSG00000185894|ENST00000382287|BPY2C ENSG00000185894|ENST00000382287|BPY2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3641967773438 2 553.36385 1104.71315 1.5929 0.00088146 -0.82839 -0.0004584 0.76453 0.00042306 553.3630991537842 109.36 2.5801 103.18 101.24 103.82 -6.1757 886 502 2 0 0 0 0.61381 17 71977 71977;72080;72187;72296;72414;72472;72522;72538;72632;72737;72806;72846;72951;72967;73168;73275;73381 0.52476 0 1 5137800 71197 9189 47601 48639 82777;82778;82779;82780;82781;82782;82783;82784;82785;82786;82787;82788;82789;82790;82791;82792;82793 82777 0.16497983147542072 VNILHRLLK 9 Unmodified _VNILHRLLK_ 0 0 0 ENSG00000185894|ENST00000382287|BPY2C;ENSG00000183795|ENST00000382392|BPY2B;ENSG00000183753|ENST00000331070|BPY2 ENSG00000185894|ENST00000382287|BPY2C ENSG00000185894|ENST00000382287|BPY2C MSMS AL20221201_MKP_PDAC_01 4 553.365234375 2 553.36385 1104.71315 NaN NaN NaN NaN NaN NaN NaN 106.89 1 100.71 100.21 101.21 -6.1757 0 0 0 0.85798 1 71525 71525 0.52476 0 1 71198 9189 47601 48639 82794 82794 0.16497983147542072 VNINRKKRIP 10 Unmodified _VNINRKKRIP_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MSMS AL20221201_MKP_PDAC_01 4 619.3978881835938 2 619.396213 1236.77787 NaN NaN NaN NaN NaN NaN NaN 106.59 1 100.41 99.91 100.91 -6.1757 0 0 0 1.0024 1 71339 71339 0.40072 0 1 71199 9280;15721 47602 48640 82795 82795 0.1689555795353499 VNIQRKRRQDM 11 Unmodified _VNIQRKRRQDM_ 0 0 0 nc|ENSG00000188227|Q6ZN11-2|ZNF793;ENSG00000188227|ENST00000627814|ZNF793 nc|ENSG00000188227|Q6ZN11-2|ZNF793 nc|ENSG00000188227|Q6ZN11-2|ZNF793 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.271728515625 3 481.936893 1442.78885 -0.44362 -0.0002138 -1.9506 -0.00094009 -2.3943 -0.0011539 481.93586954194967 15.17 0.043726 15.156 15.128 15.172 -0.014067 22 14 2 0 0 0 0.73992 1 7426 7426 0.50596 0 1 483420 71200 9642 47603 48641 82796 82796 0.08516592265527834 VNIVGDRP 8 Unmodified _VNIVGDRP_ 0 0 0 REV__ENST00000529993.5_1_11:68154039-68171824:+|nuORF REV__ENST00000529993.5_1_11:68154039-68171824:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.48779296875 1 869.483942 868.476666 0.10911 9.4866E-05 -0.49052 -0.0004265 -0.38141 -0.00033163 869.4830768852771 37.495 0.25471 37.495 37.35 37.604 0 24 13 2 0 0 0 0.75262 1 20010 20010 12.532 3.9383 1 6146400 + 71201 28431 47604 48642 82797 82797 0.037166315832337204 VNKAPRGK 8 Unmodified _VNKAPRGK_ 0 0 0 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 REV__nc|ENSG00000126787|Q15398-3|DLGAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2694702148438 2 435.269419 868.524284 0.22813 9.9298E-05 1.647 0.00071691 1.8752 0.00081621 435.2698779501261 16.109 0.13269 16.114 16.043 16.176 0.0050564 15 10 2 0 0 0 0.80722 1 8050 8050 2.3027 0 1 450130 + 71202 19560 47605 48643 82798 82798 0.08476330574092117 VNKFFYPCF 9 Unmodified _VNKFFYPCF_ 0 0 0 REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 REV__nc|ENSG00000244122|Q9HAW7-2|UGT1A7 MSMS AL20221201_MKP_PDAC_01 4 389.1800231933594 3 388.856406 1163.54739 NaN NaN NaN NaN NaN NaN NaN 14.35 1 11.847 11.347 12.347 -2.5029 0 0 0 0.84369 1 7284 7284 2.9952 0 1 + 71203 24482 47606 48644 82799 82799 -0.027844114234767403 VNKHLFDG 8 Unmodified _VNKHLFDG_ 0 0 0 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 ENSG00000168152|ENST00000302236|THAP9 MSMS AL20221201_MKP_PDAC_01 4 465.2443542480469 2 465.245609 928.476666 NaN NaN NaN NaN NaN NaN NaN 24.868 1 21.985 21.485 22.485 -2.8831 0 0 0 0.9192 1 13566 13566 16.942 1.0951 1 71204 7724 47607 48645 82800 82800 0.009566315832444161 VNKHRLLVIN 10 Unmodified _VNKHRLLVIN_ 0 0 0 REV__ENST00000484122.5_1_17:12896137-12899859:-|nuORF REV__ENST00000484122.5_1_17:12896137-12899859:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.7419128417969 3 402.587418 1204.74043 -0.38901 -0.00015661 0.83132 0.00033468 0.44231 0.00017807 402.5877288484734 32.072 0.24739 32.101 31.969 32.216 0.029747 25 10 3 0 0 0 0.2399 1 16762 16762 1.9064 0.1641 1 5427700 + 71205 27754 47608 48646 82801 82801 0.146244666879511 VNKKKKTKT 9 Unmodified _VNKKKKTKT_ 0 0 0 REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.8544921875 2 537.853316 1073.69208 -0.59786 -0.00032156 0.025835 1.3896E-05 -0.57203 -0.00030767 537.8535376450317 102.84 0.34943 102.8 102.6 102.95 -0.047928 22 12 2 0 0 0 0.62242 1 57115 57115 0 0 1 1539600 + 71206 26029 47609 48647 82802 82802 0.15817973048046952 VNKKKKTKT 9 Unmodified _VNKKKKTKT_ 0 0 0 REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF REV__ENST00000369151.7_1_10:120445350-120445566:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.853316 1073.69208 -0.59786 -0.00032156 0.025835 1.3896E-05 -0.57203 -0.00030767 537.8535376450317 102.84 0.34943 102.8 102.6 102.95 -0.047928 0 0 NaN 0 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1539600 + 71207 26029 47609 48647 0.15817973048046952 VNKKKTDR 8 Unmodified _VNKKKTDR_ 0 0 0 REV__ENST00000465570.1_1_1:156374348-156382334:-|nuORF REV__ENST00000465570.1_1_1:156374348-156382334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.8000183105469 2 494.79854 987.582528 2.4257 0.0012002 0.0028867 1.4284E-06 2.4286 0.0012017 494.7983858183914 95.958 0.29514 95.962 95.79 96.085 0.004158 22 10 3 0 0 0 0.80975 1 53310 53310 0.79363 0.10326 1 2679400 + 71208 27393 47610 48648 82803 82803 0.08823967428702417 VNKLAVLP 8 Unmodified _VNKLAVLP_ 0 0 0 ENST00000539587.5_1_11:71791910-71806563:+|nuORF;nc|ENSG00000184154|Q96E66-6|LRRC51;ENSG00000184154|ENST00000289488|LRRC51;ENST00000412777.6_1_11:71791888-71806143:+|nuORF;nc|ENSG00000184154|Q96E66-3|LRRC51;nc|ENSG00000184154|Q96E66-2|LRRC51;nc|ENSG00000184154|Q96E66-5|LRRC51;ENST00000307198.11_1_11:71791888-71817176:+|nuORF;nc|ENSG00000184154|Q96E66-4|LRRC51 ENST00000539587.5_1_11:71791910-71806563:+|nuORF ENST00000539587.5_1_11:71791910-71806563:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 427.2804565429688 2 427.278921 852.543289 NaN NaN NaN NaN NaN NaN NaN 106.64 1 100.47 99.966 100.97 -6.1757 0 0 0 0.97444 1 71374 71374 0.79363 0 1 71209 9224 47611 48649 82804 82804 0.11111867145143606 VNKLDLTF 8 Unmodified _VNKLDLTF_ 0 0 0 REV__nc|ENSG00000117400|P40238-2|MPL REV__nc|ENSG00000117400|P40238-2|MPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.27099609375 2 475.271293 948.528032 NaN NaN NaN NaN NaN NaN NaN 90.195 1 89.693 89.193 90.193 -0.50171 0 0 0 0.97348 1 49305 49305 5.7604 0 1 + 71210 19101 47612 48650 82805 82805 0.05170955557287016 VNKNNSFHI 9 Unmodified _VNKNNSFHI_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.1900329589844 3 358.189324 1071.54614 NaN NaN NaN NaN NaN NaN NaN 16.518 1 16.518 16.018 17.018 0 0 0 0 0.7243 1 8061 8061 5.2969 0 1 71211 702 47613 48651 82806 82806 0.01323090531991511 VNKNTEGPYF 10 Unmodified _VNKNTEGPYF_ 0 0 0 nc|ENSG00000008277|Q9P0K1-2|ADAM22;ENSG00000008277|ENST00000413139|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 nc|ENSG00000008277|Q9P0K1-2|ADAM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7853393554688 2 584.785296 1167.55604 0.055636 3.2535E-05 -0.13266 -7.7575E-05 -0.07702 -4.504E-05 584.785154544367 65.496 0.54338 65.012 64.77 65.314 -0.48428 94 24 5 0 0 0 0.60623 1 35869 35869 10.824 1.4765 1 219700000 71212 381 47614 48652 82807 82807 -0.021037662532762624 VNLGEVHIAY 10 Unmodified _VNLGEVHIAY_ 0 0 0 REV__nc|ENSG00000100241|O95248|SBF1 REV__nc|ENSG00000100241|O95248|SBF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.866455078125 3 372.201229 1113.58186 0.018399 6.8482E-06 -1.0933 -0.00040693 -1.0749 -0.00040008 372.20084204093854 34.722 3.8598 34.75 33.521 37.381 0.027401 330 135 3 0 0 0 0.69064 2 19579 18280;19579 1.9064 0 1 285750000 + 71213 18032 47615 48653 82808;82809 82809 0.02961127988987755 VNLGKVKL 8 Unmodified _VNLGKVKL_ 0 0 0 ENST00000298492.5_1_10:126523771-126523837:+|nuORF ENST00000298492.5_1_10:126523771-126523837:+|nuORF ENST00000298492.5_1_10:126523771-126523837:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.5780029296875 1 870.577114 869.569838 1.48 0.0012885 0.54092 0.00047091 2.021 0.0017594 870.577454834179 108.15 2.3415 101.97 100.95 103.29 -6.1757 714 428 2 0 0 0 0.80992 1 71906 71906 0.69038 0 1 9076000 71214 11534 47616 48654 82810 82810 0.12983556036476784 VNLKTLSIL 9 Unmodified _VNLKTLSIL_ 0 0 0 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 ENSG00000178295|ENST00000381254|GEN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.8255310058594 2 500.823692 999.632832 1.701 0.00085192 1.3376 0.00066992 3.0387 0.0015218 500.82484403856705 109.71 1.9772 103.53 101.84 103.82 -6.1757 487 293 2 0 0 0 0.61381 1 72631 72631 0.52476 0 1 7573500 71215 8742 47617 48655 82811 82811 0.13300077033864 VNLLAIKP 8 Unmodified _VNLLAIKP_ 0 0 0 REV__nc|ENSG00000135624|Q99832-2|CCT7 REV__nc|ENSG00000135624|Q99832-2|CCT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2870178222656 2 434.286746 866.558939 1.6898 0.00073385 -0.87448 -0.00037977 0.81531 0.00035408 434.286647732542 105.46 0.23658 99.287 99.218 99.455 -6.1757 65 33 3 0 0 0 0.80992 1 70673 70673 0.69038 0 1 23527000 + 71216 20082 47618 48656 82812 82812 0.12032153662164546 VNLPINGNGKQ 11 Unmodified _VNLPINGNGKQ_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3203735351562 2 577.319837 1152.62512 0.89064 0.00051418 0.040731 2.3515E-05 0.93137 0.0005377 577.3197643719373 39.446 0.54697 34.995 34.72 35.267 -4.4509 94 33 4 0 0 0 3.8707E-15 3 23528 23276;23396;23528 137.42 68.319 1 104980000 71217 1386 47619 48657 82813;82814;82815 82815 0.054913177662683665 VNLPINGNGKQ 11 Unmodified _VNLPINGNGKQ_ 0 0 0 ENSG00000084207|ENST00000398606|GSTP1;ENST00000498765.5_1_11:67352240-67354045:+|nuORF;ENST00000494593.1_1_11:67353853-67354045:+|nuORF ENSG00000084207|ENST00000398606|GSTP1 ENSG00000084207|ENST00000398606|GSTP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.319837 1152.62512 -0.24458 -0.0001412 0.050277 2.9026E-05 -0.1943 -0.00011218 577.3198054605457 35.06 0.24746 34.837 34.669 34.917 -0.2224 -0.078894 7.881E-06 NaN 137.42 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 892120 71218 1386 47619 48657 0.054913177662683665 VNLPLPQLFS 10 Unmodified _VNLPLPQLFS_ 0 0 0 REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5535278320312 3 376.553492 1126.63865 0.27879 0.00010498 -0.34646 -0.00013046 -0.067669 -2.5481E-05 376.5532990832353 41.032 0.15794 40.729 40.64 40.798 -0.30304 11 7 2 0 0 0 0.69917 1 21737 21737 1.4551 0.44154 1 2031300 + 71219 26869 47620 48658 82816 82816 0.08039175545513899 VNLPLPQLFS 10 Unmodified _VNLPLPQLFS_ 0 0 0 REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.553492 1126.63865 0.27879 0.00010498 -0.34646 -0.00013046 -0.067669 -2.5481E-05 376.5532990832353 41.032 0.15794 40.729 40.64 40.798 -0.30304 0.077355 0.00016006 NaN 1.4551 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2031300 + 71220 26869 47620 48658 0.08039175545513899 VNLPLPQLFS 10 Unmodified _VNLPLPQLFS_ 0 0 0 REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 376.553492 1126.63865 1.1373 0.00042824 -0.89009 -0.00033517 0.24716 9.3069E-05 376.5526692385573 45.529 0.32525 40.575 40.464 40.789 -4.9549 -0.077355 -0.00045406 NaN 1.4551 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 9520200 + 71221 26869 47620 48658 0.08039175545513899 VNLPRRKV 8 Unmodified _VNLPRRKV_ 0 0 0 ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 ENSG00000114805|ENST00000460012|PLCH1 MSMS AL20221201_MKP_PDAC_01 4 491.3216552734375 2 491.319443 980.624333 NaN NaN NaN NaN NaN NaN NaN 105.15 1 98.978 98.478 99.478 -6.1757 0 0 0 0.97444 1 70435 70435 0.69038 0 1 71222 3065 47621 48659 82817 82817 0.1332456790788683 VNLPYYAVVK 10 Unmodified _VNLPYYAVVK_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.3334350585938 2 583.334424 1164.6543 0.70244 0.00040976 -1.089 -0.00063528 -0.3866 -0.00022552 583.3337666462496 48.775 0.21864 48.732 48.609 48.828 -0.04369 16 10 2 0 0 0 0.56348 1 26333 26333 13.042 0 1 4244100 71223 1378 47622 48660 82818 82818 0.07855462062548213 VNLTLTNL 8 Unmodified _VNLTLTNL_ 0 0 0 REV__ENST00000484693.1_1_6:30709216-30709507:-|nuORF REV__ENST00000484693.1_1_6:30709216-30709507:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2654724121094 2 444.263468 886.512382 1.712 0.00076057 -0.1937 -8.6054E-05 1.5183 0.00067452 444.263175628987 105.2 0.14282 99.02 98.949 99.092 -6.1757 74 32 3 0 0 0 0.80992 1 70424 70424 0.69038 0 1 222930000 + 71224 27755 47623 48661 82819 82819 0.06458669040216591 VNNELVYL 8 Unmodified _VNNELVYL_ 0 0 0 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 REV__nc|ENSG00000145934|Q9NT68-2|TENM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2603759765625 2 482.260925 962.507297 NaN NaN NaN NaN NaN NaN NaN 85.241 1 84.739 84.239 85.239 -0.5015 0 0 0 0.97444 1 46640 46640 2.5775 0 1 + 71225 29683 47624 48662 82820 82820 0.02454365177618456 VNPLVEVP 8 Unmodified _VNPLVEVP_ 0 0 0 REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF REV__ENST00000589685.2_1_19:1986489-1990887:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 433.7529296875 2 433.752736 865.490919 NaN NaN NaN NaN NaN NaN NaN 84.902 1 78.726 78.226 79.226 -6.1757 0 0 0 0.73801 1 55885 55885 26.341 1.6674 1 + 71226 19915 47625 48663 82821 82821 0.05279284011521668 VNPPPPEYI 9 Unmodified _VNPPPPEYI_ 0 0 0 nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT nc|ENSG00000137948|Q58F21-4|BRDT nc|ENSG00000137948|Q58F21-4|BRDT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.2699584960938 2 513.26875 1024.52295 0.50354 0.00025845 -1.3706 -0.00070347 -0.86703 -0.00044502 513.2691538202796 74.675 0.32858 74.721 74.547 74.876 0.045959 23 14 2 0 0 0 0.41742 1 41173 41173 11.64 0 1 811250 71227 4991 47626 48664 82822 82822 0.011666516946434058 VNPSRTPAVI 10 Unmodified _VNPSRTPAVI_ 0 0 0 nc|ENSG00000070371|P53675-2|CLTCL1;ENSG00000070371|ENST00000427926|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 nc|ENSG00000070371|P53675-2|CLTCL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8739013671875 3 351.873224 1052.59784 1.8582 0.00065385 0.11613 4.0865E-05 1.9743 0.00069471 351.87330620813844 20.586 0.57838 17.893 17.627 18.205 -2.693 103 34 4 0 0 0 0.48505 1 11098 11098 14.957 0.55178 1 32670000 71228 1026 47627 48665 82823 82823 0.07364834225904815 VNPVEQRQR 9 Unmodified _VNPVEQRQR_ 0 0 0 nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R nc|ENSG00000159403|P00736|C1R nc|ENSG00000159403|P00736|C1R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.756591796875 2 563.309803 1124.60505 2.4744 0.0013939 -1.797 -0.0010123 0.67743 0.0003816 563.3091492611521 62.664 0.37344 56.488 56.302 56.676 -6.1757 33 18 3 0 0 0 0.18882 1 40577 40577 15.847 3.6065 1 22890000 71229 6653 47628 48666 82824 82824 0.047735668263158004 VNQFQLVSK 9 Unmodified _VNQFQLVSK_ 0 0 0 REV__ENSG00000182674|ENST00000523207|KCNB2 REV__ENSG00000182674|ENST00000523207|KCNB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.321533203125 2 531.800749 1061.58694 0.25333 0.00013472 0.97617 0.00051913 1.2295 0.00065385 531.8013415037126 54.037 0.5348 53.57 53.306 53.841 -0.46664 83 25 4 0 0 0 0.19891 1 29411 29411 11.64 0.81637 1 58386000 + 71230 23289 47629 48667 82825 82825 0.05861431851622001 VNQKTTIYEI 10 Unmodified _VNQKTTIYEI_ 0 0 0 nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 nc|ENSG00000163565|Q16666-3|IFI16 MSMS AL20221201_MKP_PDAC_01 4 403.8896179199219 3 403.555561 1207.64485 NaN NaN NaN NaN NaN NaN NaN 14.463 1 11.96 11.46 12.46 -2.5029 0 0 0 0.96756 1 7347 7347 4.1895 0 1 71231 7019 47630 48668 82826 82826 0.04933648986366279 VNQLREKWEKE 11 Unmodified _VNQLREKWEKE_ 0 0 0 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 ENSG00000126001|ENST00000397527|CEP250 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.9298706054688 3 486.928169 1457.76268 NaN NaN NaN NaN NaN NaN NaN 80.002 1 80.059 79.559 80.559 0.057587 0 0 0 0.94232 1 44210 44210 0.84494 0.21812 1 71232 3920 47631 48669 82827 82827 0.05210601575026885 VNQMLAFRTI 10 Unmodified _VNQMLAFRTI_ 0 0 0 REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF REV__ENST00000520448.5_1_8:24199244-24211914:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2231750488281 3 398.221748 1191.64341 0.81851 0.00032595 1.2793 0.00050944 2.0978 0.00083539 398.22238031070617 18.352 0.52279 15.731 15.574 16.097 -2.6215 101 48 4 0 0 0 0.60478 1 9618 9618 10.899 1.9227 1 5701400 + 71233 28277 47632 48670 82828 82828 0.05525736416643667 VNQVFGDRLE 10 Unmodified _VNQVFGDRLE_ 0 0 0 REV__ENSG00000071894|ENST00000616140|CPSF1 REV__ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.8037719726562 2 588.80402 1175.59349 -0.32946 -0.00019399 0.8574 0.00050484 0.52795 0.00031086 588.804528187861 23.903 0.16325 23.903 23.811 23.975 0 12 7 2 0 0 0 0.70151 1 12196 12196 2.7352 0.43246 1 627860 + 71234 17500 47633 48671 82829 82829 0.012713250123397302 VNQVIADL 8 Unmodified _VNQVIADL_ 0 0 0 nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2484130859375 2 436.247818 870.481082 1.2425 0.00054205 -0.35008 -0.00015272 0.89244 0.00038933 436.2477462738931 71.7 0.50236 65.525 65.243 65.745 -6.1757 61 26 3 0 0 0 0.19792 2 46776 46776;46910 70.716 10.326 1 71403000 71235 9499 47634 48672 82830;82831 82830 0.04066096006135922 VNQVIADL 8 Unmodified _VNQVIADL_ 0 0 0 nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 nc|ENSG00000186684|Q4G0S4-1|CYP27C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 871.4876708984375 1 871.488359 870.481082 1.051 0.00091593 0.33258 0.00028984 1.3836 0.0012058 871.4888515315129 71.714 0.50236 65.539 65.243 65.745 -6.1757 44 26 2 0 0 0 0.31612 1 46969 46969 53.576 0 1 48074000 71236 9499 47634 48672 82832 82832 0.04066096006135922 VNRNGFKTF 9 Unmodified _VNRNGFKTF_ 0 0 0 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 REV__nc|ENSG00000167615|Q96PV6-1|LENG8 MSMS AL20221201_MKP_PDAC_01 4 361.5294799804688 3 361.529569 1081.56688 NaN NaN NaN NaN NaN NaN NaN 25.15 1 22.266 21.766 22.766 -2.8831 0 0 0 0.82283 1 13745 13745 4.897 0 1 + 71237 22227 47635 48673 82833 82833 0.029356809116507065 VNRPRKIIM 9 Unmodified _VNRPRKIIM_ 0 0 0 ENST00000541804.1_1_9:37512546-37588833:-|nuORF ENST00000541804.1_1_9:37512546-37588833:-|nuORF ENST00000541804.1_1_9:37512546-37588833:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2339782714844 3 376.234099 1125.68047 NaN NaN NaN NaN NaN NaN NaN 83.019 1 83.019 82.519 83.519 0 0 0 0 0.84564 1 46046 46046 1.0715 0.91214 1 71238 15053 47636 48674 82834 82834 0.12265452753058526 VNRRDMEVAS 10 Unmodified _VNRRDMEVAS_ 0 0 0 REV__ENSG00000122376|ENST00000298786|SHLD2 REV__ENSG00000122376|ENST00000298786|SHLD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.9008483886719 3 392.864511 1175.5717 -0.35984 -0.00014137 1.5898 0.00062458 1.23 0.00048321 393.1997484692888 31.691 0.12934 31.721 31.67 31.8 0.030106 8 5 2 0 0 0 0.23896 1 16643 16643 1.7423 0 1 663640 + 71239 19340 47637 48675 82835 82835 -0.009058030078676893 VNRTPWKKC 9 Unmodified _VNRTPWKKC_ 0 0 0 nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 nc|ENSG00000117222|Q15291-2|RBBP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.8753356933594 3 377.874571 1130.60188 NaN NaN NaN NaN NaN NaN NaN 14.388 1 14.396 13.896 14.896 0.0073986 0 0 0 0.85798 1 7130 7130 0.23584 0 1 71240 3288 47638 48676 82836 82836 0.041806004479667536 VNRWLMIEI 9 Unmodified _VNRWLMIEI_ 0 0 0 REV__ENSG00000277481|ENST00000620267|PKD1L3 REV__ENSG00000277481|ENST00000620267|PKD1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.8865356445312 3 391.886476 1172.6376 0.43781 0.00017157 -1.783 -0.00069872 -1.3452 -0.00052715 391.88592592356423 14.612 0.1021 12.109 12.061 12.163 -2.5029 26 18 2 0 0 0 0.49766 1 7430 7430 7.609 0.50723 1 1601600 + 71241 24664 47639 48677 82837 82837 0.05818637904985735 VNSKDREKY 9 Unmodified _VNSKDREKY_ 0 0 0 REV__nc|ENSG00000087269|P78316-2|NOP14 REV__nc|ENSG00000087269|P78316-2|NOP14 MSMS AL20221201_MKP_PDAC_01 4 380.2012939453125 3 380.199889 1137.57784 NaN NaN NaN NaN NaN NaN NaN 26.005 1 23.054 22.554 23.554 -2.9511 0 0 0 0.58748 1 14285 14285 8.9762 1.0308 1 + 71242 17784 47640 48678 82838 82838 0.01455038495282679 VNSLFNRSFN 10 Unmodified _VNSLFNRSFN_ 0 0 0 ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8718872070312 3 399.871883 1196.59382 0.47316 0.0001892 -0.38885 -0.00015549 0.08431 3.3713E-05 399.87194292633677 67.331 0.37968 66.849 66.695 67.075 -0.48218 54 16 5 0 0 0 0.50362 2 36754 36754;36860 10.315 4.0809 1 6906100 71243 1260 47641 48679 82839;82840 82839 0.0033874473219839274 VNSLFNRSFN 10 Unmodified _VNSLFNRSFN_ 0 0 0 ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 ENSG00000079101|ENST00000692774|CLUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8720703125 3 399.871883 1196.59382 0.54664 0.00021859 -0.14523 -5.8074E-05 0.40141 0.00016051 399.8718309118183 66.854 0.21235 66.872 66.772 66.985 0.018028 19 9 3 0 0 0 0.65282 1 36715 36715 4.7159 1.6437 1 2992900 71244 1260 47641 48679 82841 82841 0.0033874473219839274 VNSNDSDDAET 11 Unmodified _VNSNDSDDAET_ 0 0 0 CON__P31096 CON__P31096 CON__P31096 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.7257080078125 2 583.725829 1165.4371 NaN NaN NaN NaN NaN NaN NaN 104.23 1 104.18 103.68 104.68 -0.048737 0 0 0 0.9435 1 57869 57869 0 0 1 + 71245 175 47642 48680 82842 82842 -0.13899629739466945 VNSYQAWQL 9 Unmodified _VNSYQAWQL_ 0 0 0 ENSG00000198597|ENST00000355537|ZNF536;ENSG00000101493|ENST00000443185|ZNF516 ENSG00000198597|ENST00000355537|ZNF536;ENSG00000101493|ENST00000443185|ZNF516 ENSG00000198597|ENST00000355537|ZNF536 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.1853637695312 3 370.185579 1107.53491 0.28322 0.00010484 0.078887 2.9203E-05 0.3621 0.00013405 370.18559457284056 55.674 0.25069 55.196 55.069 55.32 -0.47798 23 11 3 0 0 0 0.54444 1 30180 30180 2.7352 0.23671 1 2705300 71246 10110;1973 47643 48681 82843 82843 -0.014557315621459566 VNTHVAEAEF 10 Unmodified _VNTHVAEAEF_ 0 0 0 ENSG00000178233|ENST00000451188|TMEM151B ENSG00000178233|ENST00000451188|TMEM151B ENSG00000178233|ENST00000451188|TMEM151B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2410278320312 2 558.769645 1115.52474 0.46541 0.00026006 -0.010409 -5.8164E-06 0.455 0.00025424 558.7697310077722 35.985 0.23867 35.985 35.836 36.074 0 36 11 4 0 0 0 0.23227 1 19019 19019 10.824 5.0921 1 31179000 71247 8737 47644 48682 82844 82844 -0.02840339287399729 VNTIFTLLS 9 Unmodified _VNTIFTLLS_ 0 0 0 nc|ENSG00000173262|Q8TDB8-4|SLC2A14;ENSG00000173262|ENST00000431042|SLC2A14;nc|ENSG00000173262|Q8TDB8|SLC2A14;nc|ENSG00000173262|Q8TDB8-5|SLC2A14 nc|ENSG00000173262|Q8TDB8-4|SLC2A14 nc|ENSG00000173262|Q8TDB8-4|SLC2A14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2922973632812 2 504.292225 1006.5699 1.5845 0.00079905 -0.42161 -0.00021261 1.1629 0.00058643 504.29178521183707 103.62 0.07283 97.44 97.388 97.461 -6.1757 16 8 3 0 0 0 0.25681 1 69464 69464 19.257 3.4098 1 14783000 71248 8308 47645 48683 82845 82845 0.06687511245809219 VNTMGEEKEF 10 Unmodified _VNTMGEEKEF_ 0 0 0 REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.1819152832031 3 395.181506 1182.52269 -0.41053 -0.00016223 1.7133 0.00067707 1.3028 0.00051483 395.18201708455 19.951 0.1116 19.979 19.912 20.024 0.028357 9 6 2 0 0 0 0.71123 1 10080 10080 0.69767 0 1 631480 + 71249 27895 47646 48684 82846 82846 -0.06127136087502549 VNTMRGRVNFD 11 Unmodified _VNTMRGRVNFD_ 0 0 0 nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 nc|ENSG00000198380|Q06210-2|GFPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2220458984375 3 436.887428 1307.64045 0.23155 0.00010116 -1.2188 -0.00053246 -0.98722 -0.0004313 436.8870257425162 65.809 0.25026 65.809 65.648 65.898 0 20 12 2 0 0 0 0.66428 1 36678 36678 3.8459 0 1 2679500 71250 10085 47647 48685 82847 82847 -0.001061387081790599 VNTPIVATF 9 Unmodified _VNTPIVATF_ 0 0 0 REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 963.5406494140625 1 961.535309 960.528032 0.59275 0.00056995 0.21119 0.00020307 0.80394 0.00077302 961.5358200304478 73.351 0.39708 72.875 72.695 73.092 -0.47588 38 17 3 0 0 0 0.56862 1 40178 40178 3.2813 0.39209 1 3546100 + 71251 18362 47648 48686 82848 82848 0.04618955557282334 VNVDGDVDDDE 11 Unmodified _VNVDGDVDDDE_ 0 0 0 REV__nc|ENSG00000165525|O60524-4|NEMF REV__nc|ENSG00000165525|O60524-4|NEMF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2359008789062 2 596.236029 1190.45751 NaN NaN NaN NaN NaN NaN NaN 14.902 1 14.907 14.407 15.407 0.0057774 0 0 0 0.9435 1 7407 7407 0 0 1 + 71252 22018 47649 48687 82849 82849 -0.1301045907966909 VNVHLGTL 8 Unmodified _VNVHLGTL_ 0 0 0 ENSG00000078898|ENST00000170150|BPIFB2 ENSG00000078898|ENST00000170150|BPIFB2 ENSG00000078898|ENST00000170150|BPIFB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7511291503906 2 426.750527 851.486502 NaN NaN NaN NaN NaN NaN NaN 0.14143 1 0.067507 -0.43249 0.56751 -0.07392 0 0 0 0.97444 1 72 72 0 0 1 71253 1257 47650 48688 82850 82850 0.05481819588635517 VNVRHKLT 8 Unmodified _VNVRHKLT_ 0 0 0 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 ENSG00000018699|ENST00000317907|TTC27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.7946472167969 2 483.795801 965.577048 -0.15756 -7.6226E-05 -0.81953 -0.00039648 -0.97708 -0.00047271 483.79541069245033 53.732 0.21494 53.669 53.613 53.828 -0.063419 19 14 2 0 0 0 0.74163 1 29164 29164 13.508 4.1604 1 5145900 71254 513 47651 48689 82851 82851 0.09288288636889774 VNVRPSHKI 9 Unmodified _VNVRPSHKI_ 0 0 0 REV__nc|ENSG00000164616|Q9UKT6|FBXL21P REV__nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.5460510253906 3 350.545331 1048.61416 -0.07355 -2.5783E-05 0.60395 0.00021171 0.5304 0.00018593 350.54546193758523 16.3 0.16185 16.305 16.216 16.378 0.0050564 17 11 2 0 0 0 0.43463 1 8161 8161 10.8 0 1 936660 + 71255 29752 47652 48690 82852 82852 0.09179960182655122 VNVRVIVS 8 Unmodified _VNVRVIVS_ 0 0 0 nc|ENSG00000113971|Q7Z494-6|NPHP3;ENSG00000113971|ENST00000337331|NPHP3 nc|ENSG00000113971|Q7Z494-6|NPHP3 nc|ENSG00000113971|Q7Z494-6|NPHP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 885.5526733398438 1 885.551628 884.544351 1.0109 0.00089525 1.4434 0.0012782 2.4543 0.0021734 885.5524723114607 105.75 0.27293 99.578 99.476 99.749 -6.1757 42 33 2 0 0 0 0.80992 1 70810 70810 0.69038 0 1 3744900 71256 3011 47653 48691 82853 82853 0.09746081514049365 VNVTWKSRL 9 Unmodified _VNVTWKSRL_ 0 0 0 nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG nc|ENSG00000042832|P01266-2|TG nc|ENSG00000042832|P01266-2|TG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2174072265625 3 368.217102 1101.62948 -0.23259 -8.5645E-05 0.86765 0.00031949 0.63506 0.00023384 368.2174842062758 32.619 0.1598 32.49 32.392 32.552 -0.12915 15 6 3 0 0 0 0.49272 1 17016 17016 4.897 1.0207 1 1538100 71257 666 47654 48692 82854 82854 0.08272826979850834 VNYQSIFPR 9 Unmodified _VNYQSIFPR_ 0 0 0 REV__ENSG00000205403|ENST00000394634|CFI REV__ENSG00000205403|ENST00000394634|CFI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.201416015625 3 375.201341 1122.58219 0.064869 2.4339E-05 1.0695 0.00040128 1.1344 0.00042562 375.2016853941282 38.009 0.34303 38.009 37.786 38.129 0 25 16 2 0 0 0 0.41742 1 20248 20248 7.609 3.0801 1 1332400 + 71258 24226 47655 48693 82855 82855 0.025805477088624684 VPAAASKISM 10 Unmodified _VPAAASKISM_ 0 0 0 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2 MSMS AL20221201_MKP_PDAC_01 4 487.7708740234375 2 487.770603 973.526652 NaN NaN NaN NaN NaN NaN NaN 39.198 1 34.747 34.247 35.247 -4.4509 0 0 0 0.32543 1 23237 23237 35.612 1.2105 1 71259 4231 47656 48694 82856 82856 0.03882998196877452 VPAAGALLW 9 Unmodified _VPAAGALLW_ 0 0 0 nc|ENSG00000143443|Q9BUN1-2|MENT;ENSG00000143443|ENST00000368926|C1orf56 nc|ENSG00000143443|Q9BUN1-2|MENT nc|ENSG00000143443|Q9BUN1-2|MENT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 449.26123046875 2 449.263271 896.511988 NaN NaN NaN NaN NaN NaN NaN 27.679 1 27.679 27.179 28.179 0 0 0 0 0.54015 1 14268 14268 14.582 1.0738 1 71260 5512 47657 48695 82857 82857 0.05959294111039526 VPAAGNKV 8 Unmodified _VPAAGNKV_ 0 0 0 REV__ENSG00000186073|ENST00000566621|CDIN1 REV__ENSG00000186073|ENST00000566621|CDIN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.222900390625 2 378.224146 754.433738 NaN NaN NaN NaN NaN NaN NaN 30.425 1 30.425 29.925 30.925 0 0 0 0 0.95201 1 15807 15807 10.183 4.423 1 + 71261 23547 47658 48696 82858 82858 0.046698615258037535 VPAAPTPVAY 10 Unmodified _VPAAPTPVAY_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7727355957031 2 493.271293 984.528032 0.69379 0.00034223 0.41431 0.00020437 1.1081 0.0005466 493.271438663814 48.198 0.23424 47.845 47.69 47.924 -0.3526 15 11 2 0 0 0 0.18088 1 25854 25854 36.044 24.404 1 2622700 71262 2100 47659 48697 82859 82859 0.03514955557261601 VPAAPTPVAY 10 Unmodified _VPAAPTPVAY_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MSMS AL20221201_MKP_PDAC_01 4 493.2709045410156 2 493.271293 984.528032 NaN NaN NaN NaN NaN NaN NaN 55.305 1 49.384 48.884 49.884 -5.9211 0 0 0 0.014093 1 35193 35193 67.344 45.597 1 71263 2100 47659 48697 82860 82860 0.03514955557261601 VPAAPTPVAY 10 Unmodified _VPAAPTPVAY_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.271293 984.528032 0.62396 0.00030778 0.58979 0.00029093 1.2137 0.00059871 493.27141559078325 47.863 0.22863 47.863 47.707 47.936 0 0.0088573 8.0139E-05 NaN 36.044 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1718400 71264 2100 47659 48697 0.03514955557261601 VPAARSILAL 10 Unmodified _VPAARSILAL_ 0 0 0 nc|ENSG00000101161|O94906-2|PRPF6;ENSG00000101161|ENST00000266079|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 nc|ENSG00000101161|O94906-2|PRPF6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7867736816406 2 505.821484 1009.62842 0.39947 0.00020206 -0.33031 -0.00016708 0.069152 3.4978E-05 505.8209953113353 61.868 0.29716 61.835 61.629 61.926 -0.032787 28 14 3 0 0 0 0.19363 1 33710 33710 33.445 2.1766 1 9256600 71265 1923 47660 48698 82861 82861 0.1239861261092301 VPAAVPAAV 9 Unmodified _VPAAVPAAV_ 0 0 0 REV__ENSG00000129757|ENST00000440480|CDKN1C REV__ENSG00000129757|ENST00000440480|CDKN1C MSMS AL20221201_MKP_PDAC_01 4 397.7431335449219 2 397.742171 793.469789 NaN NaN NaN NaN NaN NaN NaN 58.62 1 52.546 52.046 53.046 -6.0745 0 0 0 0.15264 1 37571 37571 36.466 0 1 + 71266 19685 47661 48699 82862 82862 0.06479318702645287 VPAAYAAS 8 Unmodified _VPAAYAAS_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.1937561035156 2 375.195054 748.375555 NaN NaN NaN NaN NaN NaN NaN 13.618 1 13.626 13.126 14.126 0.0073986 0 0 0 0.97444 1 6718 6718 0.79363 0 1 71267 16604 47662 48700 82863 82863 -0.008698201194874855 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 916.551513671875 1 916.550231 915.542954 0.19493 0.00017866 0.58399 0.00053526 0.77892 0.00071392 916.5506484673987 86.763 0.40244 86.259 86.066 86.469 -0.50318 42 15 4 0 0 0 0.047696 2 47509 47414;47509 45.75 0 1 3330000 + 71268 24290 47663 48701 82864;82865 82865 0.08180447425263537 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7794799804688 2 458.778754 915.542954 0.35936 0.00016487 0.60165 0.00027603 0.96102 0.00044089 458.77891536257687 86.755 0.4499 86.252 86.044 86.494 -0.50318 47 17 4 0 0 0 0.047696 1 47432 47432 45.75 9.2838 1 4881000 + 71269 24290 47663 48701 82866 82866 0.08180447425263537 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.5491943359375 1 916.550231 915.542954 0.70987 0.00065063 0.60545 0.00055492 1.3153 0.0012056 916.5508400790294 94.73 0.78757 88.554 88.233 89.021 -6.1757 69 44 2 0 0 0 0.047696 3 62642 62642;62768;62880 45.75 0 1 9426700 + 71270 24290 47663 48701 82867;82868;82869 82867 0.08180447425263537 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 459.2810668945312 2 458.778754 915.542954 1.0792 0.00049513 -0.025363 -1.1636E-05 1.0539 0.00048349 458.77872423286027 94.863 0.93377 88.688 88.186 89.12 -6.1757 116 53 3 0 0 0 0.047696 4 62670 62670;62791;62908;63035 45.75 9.2838 1 28360000 + 71271 24290 47663 48701 82870;82871;82872;82873 82870 0.08180447425263537 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 459.2810668945312 2 458.778754 915.542954 1.0792 0.00049513 -0.025363 -1.1636E-05 1.0539 0.00048349 458.77872423286027 94.863 0.93377 88.688 88.186 89.12 -6.1757 116 53 3 0 0 0 0.061637 1 62670 62670 45.75 9.2838 1 28360000 + 71272 24290 47663 48701 82874 82874 0.08180447425263537 VPAAYALVL 9 Unmodified _VPAAYALVL_ 0 0 0 REV__nc|ENSG00000213638|Q96EY9|ADAT3 REV__nc|ENSG00000213638|Q96EY9|ADAT3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 916.550231 915.542954 0.19493 0.00017866 0.58399 0.00053526 0.77892 0.00071392 916.5506484673987 86.763 0.40244 86.259 86.066 86.469 -0.50318 0 0 NaN 45.75 42 15 4 NaN NaN NaN NaN 0 NaN NaN 0 3330000 + 71273 24290 47663 48701 0.08180447425263537 VPADAVVQY 9 Unmodified _VPADAVVQY_ 0 0 0 ENSG00000134285|ENST00000550765|FKBP11;ENST00000546847.5_1_12:49315769-49317670:-|nuORF ENSG00000134285|ENST00000550765|FKBP11 ENSG00000134285|ENST00000550765|FKBP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2534484863281 2 481.2531 960.491647 0.078207 3.7637E-05 -0.86865 -0.00041804 -0.79045 -0.0003804 481.2531109555032 44.168 0.23506 44.168 44.07 44.305 0 14 11 2 0 0 0 0.016184 1 24033 24033 67.344 33.241 1 6967400 71274 4584 47664 48702 82875 82875 0.009820786605587273 VPADLGLLDM 10 Oxidation (M) _VPADLGLLDM(Oxidation (M))_ VPADLGLLDM(1) VPADLGLLDM(46) 0 0 1 REV__nc|ENSG00000084070|Q8WU79-3|SMAP2 REV__nc|ENSG00000084070|Q8WU79-3|SMAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2754516601562 2 530.273175 1058.5318 0.72207 0.0003829 -2.3406 -0.0012412 -1.6186 -0.00085828 530.2719083021733 57.194 0.2178 57.194 57.022 57.239 0 23 9 3 0 0 0 0.1028 1 31798 31798 46.021 8.047 1 6189200 + 71275 17727 47665 48703 82876 82876 1828 0.004872572688100263 VPAEELVEM 9 Oxidation (M) _VPAEELVEM(Oxidation (M))_ VPAEELVEM(1) VPAEELVEM(57) 0 0 1 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7496337890625 2 516.749533 1031.48451 -0.18203 -9.4065E-05 -0.22845 -0.00011805 -0.41048 -0.00021212 516.7496580356359 41.674 0.28862 41.674 41.48 41.769 0 46 14 4 0 0 0 0.026094 1 22544 22544 57.471 28.985 1 83891000 71276 4285 47666 48704 82877 82877 765 -0.029970220021596106 VPAEELVEM 9 Oxidation (M) _VPAEELVEM(Oxidation (M))_ VPAEELVEM(1) VPAEELVEM(67) 0 0 1 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7495727539062 2 516.749533 1031.48451 -0.0099893 -5.162E-06 -0.3551 -0.0001835 -0.36509 -0.00018866 516.7494956961444 41.891 0.31673 41.891 41.751 42.068 0 61 16 5 0 0 0 0.016184 1 22663 22663 67.344 35.038 1 108920000 71277 4285 47666 48704 82878 82878 765 -0.029970220021596106 VPAEELVEM 9 Unmodified _VPAEELVEM_ 0 0 0 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7520446777344 2 508.752075 1015.4896 0.59565 0.00030304 -0.42421 -0.00021582 0.17143 8.7216E-05 508.7517773902564 59.607 0.35061 59.607 59.423 59.773 0 36 15 3 0 0 0 0.095405 1 33166 33166 34.102 7.2188 1 7165700 71278 4285 47666 48705 82879 82879 -0.017527181395507796 VPAEELVEM 9 Unmodified _VPAEELVEM_ 0 0 0 nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12;ENSG00000131016|ENST00000402676|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 nc|ENSG00000131016|Q02952-3|AKAP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7525024414062 2 508.752075 1015.4896 0.47318 0.00024073 -0.24135 -0.00012279 0.23183 0.00011794 508.7520242688081 67.751 0.63527 61.575 61.236 61.871 -6.1757 83 36 3 0 0 0 0.095405 2 44147 44019;44147 34.102 16.458 1 170200000 71279 4285 47666 48705 82880;82881 82881 -0.017527181395507796 VPAEHQVAM 9 Oxidation (M) _VPAEHQVAM(Oxidation (M))_ VPAEHQVAM(1) VPAEHQVAM(46) 0 0 1 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2422180175781 2 499.242209 996.469866 0.62643 0.00031274 0.15727 7.8518E-05 0.78371 0.00039126 499.24231829940436 17.705 0.25777 15.119 15.064 15.322 -2.5866 53 31 2 0 0 0 0.047714 1 9271 9271 45.74 30.902 1 4796800 71280 9887 47667 48706 82882 82882 1588 -0.02851049359640001 VPAEHQVAM 9 Unmodified _VPAEHQVAM_ 0 0 0 nc|ENSG00000196943|Q86U38-2|NOP9;ENSG00000196943|ENST00000267425|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 nc|ENSG00000196943|Q86U38-2|NOP9 MSMS AL20221201_MKP_PDAC_01 4 491.246337890625 2 491.244752 980.474951 NaN NaN NaN NaN NaN NaN NaN 28.86 1 25.712 25.212 26.212 -3.1482 0 0 0 0.098496 1 16133 16133 43.772 5.7984 1 71281 9887 47667 48707 82883 82883 -0.0160674549703117 VPAELVPNTP 10 Unmodified _VPAELVPNTP_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3 nc|ENSG00000076770|Q9NUK0-4|MBNL3 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.788818359375 2 518.787307 1035.56006 0.54241 0.00028139 1.4977 0.00077698 2.0401 0.0010584 518.7879979538671 66.651 0.59775 60.476 60.117 60.714 -6.1757 50 33 2 0 0 0 0.2178 1 43324 43324 32.305 6.9062 1 52990000 71282 1194 47668 48708 82884 82884 0.04370323240414109 VPAEPKLAF 9 Unmodified _VPAEPKLAF_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2820434570312 2 486.28166 970.548768 0.48188 0.00023433 -0.16031 -7.7956E-05 0.32157 0.00015637 486.281497692573 53.965 0.55723 53.498 53.208 53.765 -0.46664 74 27 4 0 0 0 0.032796 2 29152 29152;29258 53.833 7.8384 1 34628000 71283 5868 47669 48709 82885;82886 82885 0.06231545936930161 VPAEPKLAF 9 Unmodified _VPAEPKLAF_ 0 0 0 ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF ENSG00000147604|ENST00000352983|RPL7 ENSG00000147604|ENST00000352983|RPL7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2823181152344 2 486.28166 970.548768 1.0588 0.00051488 -0.99702 -0.00048483 0.061787 3.0046E-05 486.2814474234105 59.322 0.91997 53.248 52.635 53.555 -6.0745 136 50 4 0 0 0 0.010301 2 37962 37962;38242 79.596 7.8118 1 204070000 71284 5868 47669 48709 82887;82888 82887 0.06231545936930161 VPAEVTVIL 9 Unmodified _VPAEVTVIL_ 0 0 0 ENSG00000145293|ENST00000273920|ENOPH1;ENST00000509635.5_1_4:83351811-83369104:+|nuORF ENSG00000145293|ENST00000273920|ENOPH1;ENST00000509635.5_1_4:83351811-83369104:+|nuORF ENSG00000145293|ENST00000273920|ENOPH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.5764770507812 1 940.57136 939.564084 -0.015103 -1.4205E-05 2.3053 0.0021683 2.2902 0.0021541 940.5742422775907 76.464 0.29622 76.464 76.315 76.612 0 18 11 2 0 0 0 0.32871 1 42487 42487 15.847 4.2069 1 370230 71285 5682;14578 47670 48710 82889 82889 0.09188412734147278 VPAFIEPNVR 10 Unmodified _VPAFIEPNVR_ 0 0 0 ENSG00000183605|ENST00000355697|SFXN4;nc|ENSG00000183605|Q6P4A7-2|SFXN4;ENST00000461438.5_1_10:120917240-120925159:-|nuORF ENSG00000183605|ENST00000355697|SFXN4 ENSG00000183605|ENST00000355697|SFXN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.2177124023438 3 381.216991 1140.62914 0.72399 0.000276 1.3471 0.00051352 2.0711 0.00078952 381.2175238391986 57.26 0.24107 57.194 57.098 57.339 -0.066036 20 11 2 0 0 0 0.71123 1 31169 31169 0.69767 0.19171 1 3526100 71286 9165 47671 48711 82890 82890 0.06445407260002867 VPAFSRRIGF 10 Unmodified _VPAFSRRIGF_ 0 0 0 nc|ENSG00000183117|Q96PZ7-4|CSMD1;nc|ENSG00000183117|Q96PZ7-3|CSMD1;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1;ENST00000523488.5_1_8:3008913-3253839:-|nuORF nc|ENSG00000183117|Q96PZ7-4|CSMD1 nc|ENSG00000183117|Q96PZ7-4|CSMD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 383.5571594238281 3 383.889097 1148.64546 1.3243 0.00050839 0.33932 0.00013026 1.6636 0.00063865 383.88932057754073 32.544 0.16686 28.688 28.565 28.732 -3.8562 12 8 2 0 0 0 0.23675 1 18557 18557 7.1017 3.1573 1 4489700 71287 9120 47672 48712 82891 82891 0.07708533216759861 VPAGACGP 8 Unmodified _VPAGACGP_ 0 0 0 ENST00000432280.2_1_6:39883834-39895306:-|nuORF;ENST00000373186.8_1_6:39883834-39895222:-|nuORF;ENST00000373181.8_1_6:39883834-39900087:-|nuORF;ENST00000373188.6_1_6:39883834-39902097:-|nuORF ENST00000432280.2_1_6:39883834-39895306:-|nuORF ENST00000432280.2_1_6:39883834-39895306:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.2634887695312 1 671.318122 670.310846 -0.63842 -0.00042859 -0.02053 -1.3782E-05 -0.65895 -0.00044237 671.3180171920771 33.753 0.23055 33.753 33.633 33.864 0 19 11 2 0 0 0 8.7369 1 17791 17791 17.087 0 1 4848300 71288 12402 47673 48713 82892 82892 -0.037497181971275495 VPAGGLVATL 10 Unmodified _VPAGGLVATL_ 0 0 0 ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6 ENSG00000126709|ENST00000361157|IFI6 ENSG00000126709|ENST00000361157|IFI6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 897.5401611328125 1 897.540394 896.533118 -0.44482 -0.00039925 0.71714 0.00064366 0.27231 0.00024441 897.5408579622148 66.583 0.28912 66.1 65.964 66.254 -0.48323 23 13 2 0 0 0 0.013198 2 36423 36316;36423 81.864 25.687 1 2163500 71289 3962 47674 48714 82893;82894 82894 0.08071259419898524 VPAGLWQY 8 Unmodified _VPAGLWQY_ 0 0 0 REV__ENSG00000242252|ENST00000368272|BGLAP REV__ENSG00000242252|ENST00000368272|BGLAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4859619140625 1 933.482879 932.475603 0.68072 0.00063544 -3.9983 -0.0037323 -3.3175 -0.0030969 933.4786506216317 45.849 0.30112 45.849 45.787 46.088 0 22 14 2 0 0 0 0.76859 1 25141 25141 11.114 0 1 4447200 + 71290 24459 47675 48715 82895 82895 0.006664172143246105 VPAGNRWL 8 Unmodified _VPAGNRWL_ 0 0 0 REV__ENST00000380199.9_1_5:80604783-80604819:+|nuORF REV__ENST00000380199.9_1_5:80604783-80604819:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7559509277344 2 456.756144 911.497735 NaN NaN NaN NaN NaN NaN NaN 55.64 1 55.64 55.14 56.14 0 0 0 0 0.97444 1 30916 30916 2.8892 0 1 + 71291 26309 47676 48716 82896 82896 0.03844641682735528 VPAHFVAL 8 Unmodified _VPAHFVAL_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.2499389648438 2 427.250163 852.485774 0.48503 0.00020723 -0.14328 -6.1218E-05 0.34174 0.00014601 427.24993580546015 52.501 0.2331 52.067 51.964 52.197 -0.43367 20 11 2 0 0 0 0.5245 1 28387 28387 32.454 15.367 1 2355500 71292 7465 47677 48717 82897 82897 0.05363024939561001 VPAHFVAL 8 Unmodified _VPAHFVAL_ 0 0 0 ENSG00000166278|ENST00000299367|C2;nc|ENSG00000166278|P06681-3|C2;nc|ENSG00000166278|P06681-2|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF ENSG00000166278|ENST00000299367|C2 ENSG00000166278|ENST00000299367|C2 MSMS AL20221201_MKP_PDAC_01 4 427.2504272460938 2 427.250163 852.485774 NaN NaN NaN NaN NaN NaN NaN 57.787 1 51.759 51.259 52.259 -6.0275 0 0 0 0.48318 1 36979 36979 41.817 9.3636 1 71293 7465 47677 48717 82898 82898 0.05363024939561001 VPAKAKLTKL 10 Unmodified _VPAKAKLTKL_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;ENST00000504956.5_1_4:87856214-87968836:+|nuORF nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.9100952148438 3 356.909498 1067.70667 1.1018 0.00039325 -0.22075 -7.8789E-05 0.88106 0.00031446 356.9094627959291 22.637 0.36098 19.858 19.67 20.031 -2.7784 65 25 4 0 0 0 0.43683 1 12152 12152 19.615 5.3972 1 10525000 71294 8226 47678 48718 82899 82899 0.1755204519615745 VPAKKGPI 8 Unmodified _VPAKKGPI_ 0 0 0 REV__ENSG00000112992|ENST00000344920|NNT REV__ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.525634765625 1 809.52435 808.517074 1.8885 0.0015288 0.37152 0.00030075 2.26 0.0018296 809.5245352611224 108.73 2.8226 102.55 100.95 103.77 -6.1757 995 538 2 0 0 0 0.81107 6 71763 71763;71868;71976;72079;72619;73355 0 0 1 15613000 + 71295 18847 47679 48719 82900;82901;82902;82903;82904;82905 82900 0.1051559797366508 VPAKKGPI 8 Unmodified _VPAKKGPI_ 0 0 0 REV__ENSG00000112992|ENST00000344920|NNT REV__ENSG00000112992|ENST00000344920|NNT MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.26708984375 2 405.265813 808.517074 1.6902 0.00068497 0.14683 5.9505E-05 1.837 0.00074448 405.2657298573138 108.63 2.1982 102.45 101.32 103.51 -6.1757 557 412 2 0 0 0 0.81107 9 71943 71943;72424;72540;72645;72755;72865;72970;73080;73191 0 0 1 6824600 + 71296 18847 47679 48719 82906;82907;82908;82909;82910;82911;82912;82913;82914 82906 0.1051559797366508 VPALFSRTQ 9 Unmodified _VPALFSRTQ_ 0 0 0 REV__ENSG00000164500|ENST00000297001|SPATA48 REV__ENSG00000164500|ENST00000297001|SPATA48 MSMS AL20221201_MKP_PDAC_01 4 509.78857421875 2 509.787641 1017.56073 NaN NaN NaN NaN NaN NaN NaN 52.392 1 46.657 46.157 47.157 -5.7345 0 0 0 0.36554 1 33071 33071 21.747 1.293 1 + 71297 21919 47680 48720 82915 82915 0.05265162680132107 VPALPGHL 8 Unmodified _VPALPGHL_ 0 0 0 ENST00000407714.1_1_2:241564763-241570253:+|nuORF ENST00000407714.1_1_2:241564763-241570253:+|nuORF ENST00000407714.1_1_2:241564763-241570253:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 402.5754699707031 2 402.242338 802.470124 1.3051 0.00052496 -0.61069 -0.00024564 0.6944 0.00027932 402.24193602432473 21.422 0.40544 18.688 18.666 19.072 -2.7348 52 28 2 0 0 0 8.7369 1 11493 11493 0.79363 0 1 3370200 71298 12947 47681 48721 82916 82916 0.060987384225086316 VPALQPAF 8 Unmodified _VPALQPAF_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.7427978515625 2 421.742171 841.469789 0.65874 0.00027782 0.30991 0.0001307 0.96864 0.00040852 421.7423464121112 72.96 0.37833 72.484 72.251 72.63 -0.47588 24 16 2 0 0 0 0.77907 1 39911 39911 10.183 0 1 577230 71299 4544 47682 48722 82917 82917 0.04271318702649296 VPALRARL 8 Unmodified _VPALRARL_ 0 0 0 ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2944641113281 2 448.295436 894.57632 -0.21334 -9.5638E-05 -0.47957 -0.00021499 -0.69291 -0.00031063 448.29510550055517 103.02 0.45045 102.98 102.81 103.26 -0.04792 36 18 2 0 0 0 0.81107 2 57179 57179;57278 0 0 1 1966200 71300 11034 47683 48723 82918;82919 82918 0.12481493987820613 VPALRARL 8 Unmodified _VPALRARL_ 0 0 0 ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 448.295436 894.57632 0.37172 0.00016664 -0.15339 -6.8766E-05 0.21833 9.7874E-05 448.2952446802731 103.05 0.2122 103.05 102.9 103.11 0 0.05737 0.00013844 NaN 0 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 171700 71301 11034 47683 48723 0.12481493987820613 VPALRARL 8 Unmodified _VPALRARL_ 0 0 0 ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF ENST00000221665.4_1_19:56104161-56104986:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 448.295436 894.57632 0.25425 0.00011398 -0.18718 -8.3913E-05 0.067067 3.0066E-05 448.2954217970304 103.05 0.41415 102.95 102.77 103.18 -0.10458 -0.043456 0.00010815 NaN 0 27 19 2 NaN NaN NaN NaN 0 NaN NaN 0 358580 71302 11034 47683 48723 0.12481493987820613 VPALVEDVVYI 11 Unmodified _VPALVEDVVYI_ 0 0 0 REV__nc|ENSG00000108846|O15438-2|ABCC3 REV__nc|ENSG00000108846|O15438-2|ABCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8444213867188 2 608.844822 1215.67509 0.52433 0.00031923 -3.0348 -0.0018477 -2.5105 -0.0015285 608.8425314238152 101.69 0.083313 95.513 95.461 95.545 -6.1757 8 3 3 0 0 0 0.65108 1 68265 68265 8.7454 0.58988 1 30315000 + 71303 18635 47684 48724 82920 82920 0.07588007651565931 VPALVVVFY 9 Unmodified _VPALVVVFY_ 0 0 0 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-3|TRAPPC11;ENST00000509857.5_1_4:184585182-184595983:+|nuORF;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11;nc|ENSG00000168538|Q7Z392-4|TRAPPC11 ENSG00000168538|ENST00000334690|TRAPPC11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1008.675476074219 1 1006.59718 1005.5899 3.9499 0.003976 0.0052637 5.2984E-06 3.9552 0.0039813 1006.5961930301409 99.482 0.1239 99.446 99.379 99.503 -0.036308 10 4 3 0 0 0 0.53666 1 55219 55219 5.2307 1.2863 1 3767100 71304 7776;16369 47685 48725 82921 82921 0.08733306976409949 VPAMHWCCS 9 Unmodified _VPAMHWCCS_ 0 0 0 REV__AGAP6|p.S524Afs*69|1|0.14|ENSG00000204149|chr10:50009759-50009759|A/-|frameshift_variant REV__AGAP6|p.S524Afs*69|1|0.14|ENSG00000204149|chr10:50009759-50009759|A/-|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.76171875 2 517.206258 1032.39796 0.58859 0.00030442 -0.3101 -0.00016039 0.27849 0.00014403 517.2063553619944 43.085 0.23679 43.085 42.985 43.222 0 16 11 2 0 0 0 0.21242 1 23326 23326 5.2307 2.3415 1 7685200 + 71305 16704 47686 48726 82922 82922 -0.11694003309366963 VPAPAAAK 8 Unmodified _VPAPAAAK_ 0 0 0 REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.7205200195312 2 362.721239 723.427924 0.088386 3.2059E-05 -2.515 -0.00091224 -2.4266 -0.00088018 362.72015641809134 77.567 0.26275 77.617 77.486 77.748 0.05011 15 10 2 0 0 0 0.81107 1 42851 42851 0 0 1 1564600 + 71306 21152 47687 48727 82923 82923 0.05514763014127766 VPAPASFKF 9 Unmodified _VPAPASFKF_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2681579589844 2 482.268553 962.522553 0.56319 0.00027161 0.56108 0.00027059 1.1243 0.0005422 482.26868228544856 56.757 0.26021 56.688 56.578 56.839 -0.068737 26 12 3 0 0 0 0.078314 1 30870 30870 38.176 15.027 1 5110500 71307 6246 47688 48728 82924 82924 0.039792767654716954 VPAPDGQFAF 10 Unmodified _VPAPDGQFAF_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7584228515625 2 524.758549 1047.50255 0.089597 4.7017E-05 0.96011 0.00050382 1.0497 0.00055084 524.7591946010773 66.522 0.35149 66.039 65.902 66.254 -0.48323 28 16 3 0 0 0 0.50362 1 36300 36300 16.149 3.6176 1 1551200 71308 3028 47689 48729 82925 82925 -0.019305189651504406 VPAPDNTVF 9 Unmodified _VPAPDNTVF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2458190917969 2 480.245275 958.475997 0.68212 0.00032759 0.96029 0.00046117 1.6424 0.00078876 480.24559210006504 51.432 0.43563 51.432 51.229 51.665 0 42 19 3 0 0 0 0.14602 2 28370 28370;28485 28.487 7.6156 1 4063800 71309 16188 47690 48730 82926;82927 82926 -0.004902078564896328 VPAPDNTVF 9 Unmodified _VPAPDNTVF_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MSMS AL20221201_MKP_PDAC_01 4 480.2455444335938 2 480.245275 958.475997 NaN NaN NaN NaN NaN NaN NaN 59.509 1 53.395 52.895 53.895 -6.1147 0 0 0 0.29524 1 38216 38216 25.399 7.2643 1 71310 16188 47690 48730 82928 82928 -0.004902078564896328 VPAPGRDLCR 10 Unmodified _VPAPGRDLCR_ 0 0 0 ENST00000590966.1_1_17:68165072-68165375:-|nuORF ENST00000590966.1_1_17:68165072-68165375:-|nuORF ENST00000590966.1_1_17:68165072-68165375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.79345703125 2 542.290025 1082.5655 0.60991 0.00033075 1.443 0.00078252 2.0529 0.0011133 542.2895880458811 36.716 0.43056 36.716 36.588 37.018 0 56 20 4 0 0 0 0.63399 1 19533 19533 9.3831 0 1 4028600 71311 15695 47691 48731 82929 82929 0.027517235512505067 VPAPRAVAV 9 Unmodified _VPAPRAVAV_ 0 0 0 REV__ENSG00000056097|ENST00000265069|ZFR REV__ENSG00000056097|ENST00000265069|ZFR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2744445800781 2 440.27417 878.533787 NaN NaN NaN NaN NaN NaN NaN 36.091 1 35.841 35.341 36.341 -0.2497 0 0 0 0.15618 1 18924 18924 36.044 0 1 + 71312 17295 47692 48732 82930 82930 0.08966098859605154 VPAQARLSAI 10 Unmodified _VPAQARLSAI_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.3091430664062 2 513.308741 1024.60293 0.5821 0.0002988 -0.29857 -0.00015326 0.28353 0.00014554 513.3086121310697 47.176 0.2534 46.824 46.685 46.938 -0.3526 22 12 2 0 0 0 0.1942 1 25260 25260 34.402 0 1 2445600 71313 2360 47693 48733 82931 82931 0.0916113808850696 VPAQARLSAI 10 Unmodified _VPAQARLSAI_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.3079833984375 2 513.308741 1024.60293 0.85126 0.00043696 -0.28966 -0.00014869 0.5616 0.00028827 513.3084637581682 52.662 0.44751 46.927 46.707 47.155 -5.7345 45 24 2 0 0 0 0.28276 1 33346 33346 28.495 3.5035 1 42858000 71314 2360 47693 48733 82932 82932 0.0916113808850696 VPAQQFTECF 10 Unmodified _VPAQQFTECF_ 0 0 0 REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407 REV__nc|ENSG00000215421|Q9C0G0-3|ZNF407 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2680053710938 2 585.268424 1168.5223 0.61656 0.00036085 -0.47994 -0.00028089 0.13662 7.9959E-05 585.7700467926682 74.768 0.3567 74.292 74.02 74.376 -0.47588 24 14 2 0 0 0 0.68719 1 40850 40850 4.3292 0 1 954450 + 71315 24341 47694 48734 82933 82933 -0.055225110167157254 VPARISTAW 9 Unmodified _VPARISTAW_ 0 0 0 ENST00000437364.2_1_1:47357320-47357608:+|nuORF ENST00000437364.2_1_1:47357320-47357608:+|nuORF ENST00000437364.2_1_1:47357320-47357608:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.72998046875 2 500.782359 999.550165 0.30128 0.00015088 -2.8472 -0.0014259 -2.546 -0.001275 501.2813353824819 39.573 0.36853 39.584 39.408 39.777 0.011452 25 17 2 0 0 0 0.20727 1 21037 21037 1.8442 0 1 2051100 71316 13347 47695 48735 82934 82934 0.05037180025703947 VPARPYRVL 9 Unmodified _VPARPYRVL_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5535888671875 3 357.553826 1069.63965 -0.3192 -0.00011413 0.72771 0.0002602 0.40851 0.00014607 357.55406774821944 31.524 0.27504 31.554 31.457 31.732 0.030106 20 12 2 0 0 0 0.43515 1 16528 16528 10.8 3.1906 1 3122500 71317 5963 47696 48736 82935 82935 0.10761434705068496 VPARPYRVL 9 Unmodified _VPARPYRVL_ 0 0 0 ENSG00000148773|ENST00000368654|MKI67;nc|ENSG00000148773|P46013-2|MKI67 ENSG00000148773|ENST00000368654|MKI67 ENSG00000148773|ENST00000368654|MKI67 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 357.553826 1069.63965 1.3446 0.00048078 1.0282 0.00036765 2.3729 0.00084843 357.55433118347315 35.471 0.44687 31.278 31.094 31.541 -4.1928 -0.13816 0.00016355 NaN 10.8 33 27 2 NaN NaN NaN NaN 0 NaN NaN 0 5193300 71318 5963 47696 48736 0.10761434705068496 VPARTWQGWWH 11 Unmodified _VPARTWQGWWH_ 0 0 0 REV__ENST00000505994.1_1_4:120315985-120316138:-|nuORF REV__ENST00000505994.1_1_4:120315985-120316138:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 712.3504028320312 2 712.354545 1422.69454 NaN NaN NaN NaN NaN NaN NaN 60.605 1 60.605 60.105 61.105 0 0 0 0 0.9385 1 33798 33798 3.5965 0 1 + 71319 28079 47697 48737 82936 82936 9.821505705076561E-05 VPASACLLQM 10 Unmodified _VPASACLLQM_ 0 0 0 ENSG00000176922|ENST00000322101|OR51S1 ENSG00000176922|ENST00000322101|OR51S1 ENSG00000176922|ENST00000322101|OR51S1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2935791015625 2 516.764463 1031.51437 0.52417 0.00027087 -0.026177 -1.3527E-05 0.49799 0.00025735 516.7643443372247 72.32 0.36018 71.844 71.66 72.02 -0.47609 21 16 2 0 0 0 0.23227 1 39551 39551 6.7232 4.6634 1 1624400 71320 8635 47698 48738 82937 82937 -0.0001236153782429028 VPASFRLQM 9 Oxidation (M) _VPASFRLQM(Oxidation (M))_ VPASFRLQM(1) VPASFRLQM(71) 0 0 1 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7831420898438 2 532.781502 1063.54845 0.16771 8.9354E-05 0.092206 4.9126E-05 0.25992 0.00013848 532.7816325456479 41.044 0.63396 41.042 40.81 41.444 -0.0017929 72 30 3 0 0 0 0.013323 3 21836 21836;21942;22052 71.134 28.656 1 34541000 71321 10002 47699 48739 82938;82939;82940 82938 1623 0.01921802945435047 VPASFRLQM 9 Unmodified _VPASFRLQM_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7843627929688 2 524.784044 1047.55354 0.43152 0.00022646 1.4347 0.00075288 1.8662 0.00097934 524.784608846236 56.753 0.3189 56.684 56.538 56.857 -0.068741 33 15 3 0 0 0 0.05447 2 30854 30854;30954 43.858 3.901 1 3858900 71322 10002 47699 48740 82941;82942 82941 0.03166106808043878 VPASFRLQM 9 Unmodified _VPASFRLQM_ 0 0 0 nc|ENSG00000197771|Q9BTE3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3-3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP nc|ENSG00000197771|Q9BTE3|MCMBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7849731445312 2 524.784044 1047.55354 1.3974 0.00073334 -0.72406 -0.00037997 0.67335 0.00035337 524.7837582654986 62.443 0.59684 56.267 55.966 56.563 -6.1757 77 31 3 0 0 0 0.05447 1 40161 40161 43.858 11.553 1 81206000 71323 10002 47699 48740 82943 82943 0.03166106808043878 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 944.5090942382812 1 944.50876 943.501483 -0.17616 -0.00016638 0.73182 0.00069121 0.55566 0.00052483 944.509020273454 75.487 0.51575 75.487 75.205 75.721 0 53 21 3 0 0 0 0.0083938 2 42006 41908;42006 108 73.895 1 3993500 71324 16209;15895 47700 48741 82944;82945 82945 0.02747266665949155 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.7580261230469 2 472.758018 943.501483 0.34392 0.00016259 -0.13626 -6.4417E-05 0.20767 9.8176E-05 472.75791126499183 75.502 0.46642 75.502 75.205 75.672 0 46 19 3 0 0 0 0.013472 2 42017 41918;42017 70.716 54.947 1 3420600 71325 16209;15895 47700 48741 82946;82947 82947 0.02747266665949155 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 944.5089721679688 1 944.50876 943.501483 0.37463 0.00035384 0.050006 4.7231E-05 0.42463 0.00040107 944.5087016044195 75.903 0.55378 75.426 75.212 75.766 -0.47713 65 23 4 0 0 0 0.0018186 3 41576 41476;41576;41677 133.7 93.253 1 9621400 71326 16209;15895 47700 48741 82948;82949;82950 82949 0.02747266665949155 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7590637207031 2 472.758018 943.501483 0.52306 0.00024728 -0.30953 -0.00014633 0.21353 0.00010095 472.75777452698577 75.953 0.51154 75.476 75.255 75.766 -0.47714 61 21 4 0 0 0 0.010877 3 41522 41522;41617;41729 77.984 59.849 1 7576100 71327 16209;15895 47700 48741 82951;82952;82953 82951 0.02747266665949155 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 944.5088500976562 1 944.50876 943.501483 0.25163 0.00023766 0.16961 0.0001602 0.42124 0.00039786 944.508876720255 83.07 0.60281 76.895 76.589 77.192 -6.1757 84 32 3 0 0 0 2.6046E-06 5 54553 54421;54459;54553;54683;54812 156.16 107.81 1 65400000 71328 16209;15895 47700 48741 82954;82955;82956;82957;82958 82956 0.02747266665949155 VPASLPVDF 9 Unmodified _VPASLPVDF_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7577514648438 2 472.758018 943.501483 0.81891 0.00038714 -0.17019 -8.0461E-05 0.64871 0.00030668 472.7579319863644 83.046 0.65834 76.87 76.554 77.212 -6.1757 92 35 3 0 0 0 0.0077963 3 54445 54445;54567;54713 109.63 77.512 1 91848000 71329 16209;15895 47700 48741 82959;82960;82961 82959 0.02747266665949155 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7658996582031 2 479.765843 957.517133 0.26285 0.00012611 -0.49461 -0.0002373 -0.23175 -0.00011119 479.76555404909783 76.873 0.72768 76.873 76.514 77.242 0 124 40 4 0 0 0 0.0094915 3 42706 42607;42706;42804 81.864 45.82 1 29797000 71330 9884 47701 48742 82962;82963;82964 82963 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 958.5250854492188 1 958.52441 957.517133 -0.029398 -2.8179E-05 -0.59371 -0.00056908 -0.6231 -0.00059726 958.5235409186793 76.874 0.54369 76.874 76.541 77.085 0 66 32 3 0 0 0 0.00032477 2 42705 42705;42803 147.83 73.408 1 7315500 71331 9884 47701 48742 82965;82966 82965 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7658386230469 2 479.765843 957.517133 -0.42442 -0.00020362 0.097911 4.6974E-05 -0.32651 -0.00015665 479.76586601058074 77.322 0.7737 76.84 76.517 77.29 -0.4826 132 35 5 0 0 0 0.0086179 4 42305 42211;42305;42401;42505 89.427 47.332 1 102320000 71332 9884 47701 48742 82967;82968;82969;82970 82968 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 958.5244140625 1 958.52441 957.517133 -0.6305 -0.00060435 0.25255 0.00024208 -0.37795 -0.00036228 958.5246431643616 77.377 0.65736 76.894 76.558 77.215 -0.4826 83 30 4 0 0 0 1.0251E-06 3 42331 42233;42331;42433 162.95 88.528 1 22935000 71333 9884 47701 48742 82971;82972;82973 82972 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.7659912109375 2 479.765843 957.517133 0.16671 7.9983E-05 0.13345 6.4023E-05 0.30016 0.00014401 479.76595060634423 76.813 0.54495 76.863 76.676 77.221 0.05011 57 22 4 0 0 0 0.0083087 2 42351 42351;42452 97.075 48.729 1 7582800 71334 9884 47701 48742 82974;82975 82974 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 958.5238037109375 1 958.52441 957.517133 0.43049 0.00041263 0.2589 0.00024816 0.68938 0.00066079 958.5246339114885 76.849 0.31036 76.899 76.722 77.033 0.05011 16 12 2 0 0 0 0.0083087 1 42410 42410 97.075 46.22 1 2506300 71335 9884 47701 48742 82976 82976 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.7660827636719 2 479.765843 957.517133 0.64118 0.00030762 -0.27789 -0.00013332 0.36329 0.0001743 479.7657519229186 84.367 1.0082 78.192 77.777 78.785 -6.1757 160 57 4 0 0 0 0.0086179 4 55557 55307;55434;55557;55694 89.427 47.332 1 458400000 71336 9884 47701 48742 82977;82978;82979;82980 82979 0.03667553182992833 VPASLPVEF 9 Unmodified _VPASLPVEF_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 958.522705078125 1 958.52441 957.517133 0.40108 0.00038444 -0.36463 -0.00034951 0.036442 3.4931E-05 958.5239894460965 84.354 0.64362 78.178 77.874 78.517 -6.1757 113 36 4 0 0 0 1.1486E-11 5 55706 55324;55446;55448;55569;55706 179.23 97.617 1 136230000 71337 9884 47701 48742 82981;82982;82983;82984;82985 82985 0.03667553182992833 VPASNAIAY 9 Unmodified _VPASNAIAY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 905.472900390625 1 905.472709 904.465432 0.22482 0.00020357 0.22688 0.00020544 0.45171 0.00040901 905.4728918161213 39.168 0.45385 39.168 38.97 39.424 0 50 21 3 0 0 0 0.0026776 2 21010 20902;21010 128.37 67.008 1 6729000 71338 4903 47702 48743 82986;82987 82987 0.009378094890735156 VPASNAIAY 9 Unmodified _VPASNAIAY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2405700683594 2 453.239993 904.465432 0.60409 0.0002738 -4.0962 -0.0018565 -3.4921 -0.0015827 453.2371434449717 39.176 0.49516 39.176 38.929 39.424 0 58 23 3 0 0 0 0.019303 1 21015 21015 64.236 22.142 1 11015000 71339 4903 47702 48743 82988 82988 0.009378094890735156 VPASNAIAY 9 Unmodified _VPASNAIAY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 905.4733276367188 1 905.472709 904.465432 0.61215 0.00055429 0.48197 0.00043641 1.0941 0.0009907 905.4731932435546 45.762 0.46593 40.807 40.569 41.035 -4.9549 63 30 3 0 0 0 0.00069393 3 28156 28013;28134;28156 141.83 80.469 1 18545000 71340 4903 47702 48743 82989;82990;82991 82991 0.009378094890735156 VPASNAIAY 9 Unmodified _VPASNAIAY_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.241943359375 2 453.239993 904.465432 0.87642 0.00039723 1.3185 0.00059761 2.195 0.00099484 453.2408706673226 45.764 0.49483 40.809 40.504 40.999 -4.9549 77 32 3 0 0 0 0.024882 2 28266 28121;28266 58.679 15.377 1 48288000 71341 4903 47702 48743 82992;82993 82993 0.009378094890735156 VPASRGITAF 10 Unmodified _VPASRGITAF_ 0 0 0 nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD nc|ENSG00000128928|P26440-2|IVD nc|ENSG00000128928|P26440-2|IVD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.7877502441406 2 509.787641 1017.56073 0.502 0.00025591 0.97826 0.00049871 1.4803 0.00075462 509.7884760752294 42.359 0.37228 42.35 42.208 42.581 -0.0088196 23 16 2 0 0 0 0.16005 1 22662 22662 38.615 16.868 1 5948700 71342 4101 47703 48744 82994 82994 0.05265162680132107 VPASVSTVSY 10 Unmodified _VPASVSTVSY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2638854980469 2 505.263665 1008.51278 -0.14099 -7.1235E-05 0.41384 0.0002091 0.27285 0.00013786 505.2638823559451 41.264 0.39645 41.264 41.045 41.441 0 62 19 4 0 0 0 0.0071864 2 22171 22171;22284 92.822 28.586 1 40630000 71343 2308 47704 48745 82995;82996 82995 0.008860439694331035 VPASVSTVSY 10 Unmodified _VPASVSTVSY_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;MYH14|p.G549Wfs*8|1|0.27|ENSG00000105357|chr19:50250519-50250520|-/C|frameshift_variant nc|ENSG00000105357|Q7Z406-6|MYH14 nc|ENSG00000105357|Q7Z406-6|MYH14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2638549804688 2 505.263665 1008.51278 0.99555 0.00050301 0.46309 0.00023398 1.4586 0.000737 505.2637037579401 48.461 0.4635 43.187 43.012 43.476 -5.2743 72 27 3 0 0 0 0.024981 2 30284 30144;30284 71.134 6.8973 1 103020000 71344 2308 47704 48745 82997;82998 82998 0.008860439694331035 VPASVTGYSF 10 Unmodified _VPASVTGYSF_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1 nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.259033203125 2 514.258382 1026.50221 0.43152 0.00022191 -0.71367 -0.00036701 -0.28215 -0.0001451 514.2582648364051 57.328 0.42339 56.838 56.6 57.024 -0.48974 59 19 4 0 0 0 0.013474 2 31094 31094;31197 81.613 47.211 1 11025000 71345 1464 47705 48746 82999;83000 82999 -0.009979386850091032 VPASVTGYSF 10 Unmodified _VPASVTGYSF_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1 nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2586669921875 2 514.258382 1026.50221 1.2948 0.00066585 -0.70393 -0.000362 0.59084 0.00030384 514.2581770724137 64.509 0.48869 58.333 58.036 58.525 -6.1757 69 26 3 0 0 0 0.0012033 3 41806 41678;41806;41941 112.59 66.572 1 55184000 71346 1464 47705 48746 83001;83002;83003 83002 -0.009979386850091032 VPATDRNAL 9 Unmodified _VPATDRNAL_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.76171875 2 478.761623 955.508694 -0.13163 -6.3018E-05 0.11984 5.7376E-05 -0.011786 -5.6425E-06 478.76159096861085 23.486 0.45156 23.486 23.243 23.694 0 62 22 4 0 0 0 0.039985 2 11981 11885;11981 49.933 9.9757 1 8177900 71347 2203 47706 48747 83004;83005 83005 0.029159992663721823 VPATDRNAL 9 Unmodified _VPATDRNAL_ 0 0 0 ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E ENSG00000104408|ENST00000220849|EIF3E MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7614440917969 2 478.761623 955.508694 0.60518 0.00028974 0.26918 0.00012888 0.87437 0.00041861 478.7619792817351 26.664 0.65753 23.713 23.34 23.998 -2.9511 69 34 3 0 0 0 0.039985 2 14665 14665;14785 49.933 3.0121 1 38241000 71348 2203 47706 48747 83006;83007 83006 0.029159992663721823 VPATFRGSAL 10 Unmodified _VPATFRGSAL_ 0 0 0 REV__ENST00000468365.1_1_1:1178728-1179534:-|nuORF REV__ENST00000468365.1_1_1:1178728-1179534:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7865295410156 2 509.787641 1017.56073 NaN NaN NaN NaN NaN NaN NaN 87.247 1 87.247 86.747 87.747 0 0 0 0 0.97302 1 48316 48316 3.5965 0.70727 1 + 71349 23401 47707 48748 83008 83008 0.05265162680132107 VPATHGQVTY 10 Unmodified _VPATHGQVTY_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7750244140625 2 536.774731 1071.53491 0.3281 0.00017611 0.072187 3.8748E-05 0.40028 0.00021486 536.774836541127 27.754 0.42735 24.717 24.454 24.882 -3.0365 45 21 3 0 0 0 8.3247E-06 2 15439 15321;15439 128.93 60.039 1 20976000 71350 3847 47708 48749 83009;83010 83010 0.00200268437856721 VPATVAAFPV 10 Unmodified _VPATVAAFPV_ 0 0 0 ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|E9PAV3-2|NACA ENSG00000196531|ENST00000454682|NACA ENSG00000196531|ENST00000454682|NACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2818603515625 2 486.28166 970.548768 1.0588 0.00051488 -0.99702 -0.00048483 0.061787 3.0046E-05 486.2814474234105 59.322 0.91997 53.248 52.635 53.555 -6.0745 136 50 4 0 0 0 0.04925 1 38097 38097 58.679 0 1 204070000 71351 9834 47709 48750 83011 83011 0.06231545936930161 VPATVDHLD 9 Unmodified _VPATVDHLD_ 0 0 0 REV__ENSG00000130035|ENST00000252318|GALNT8 REV__ENSG00000130035|ENST00000252318|GALNT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7498168945312 2 483.748182 965.481811 NaN NaN NaN NaN NaN NaN NaN 75.396 1 75.396 74.896 75.896 0 0 0 0 0.39043 1 41940 41940 20.454 8.8133 1 + 71352 19692 47710 48751 83012 83012 -0.002311093448156498 VPAVKHRK 8 Unmodified _VPAVKHRK_ 0 0 0 ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF ENSG00000054654|ENST00000555002|SYNE2 ENSG00000054654|ENST00000555002|SYNE2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.2790222167969 2 467.800886 933.587219 0.14609 6.8342E-05 0.11851 5.5438E-05 0.2646 0.00012378 467.8007662217722 55.155 0.29956 55.087 54.939 55.238 -0.068737 24 14 3 0 0 0 8.7369 1 30033 30033 2.8892 2.0956 1 2295700 71353 763 47711 48752 83013 83013 0.11776896362130174 VPAVTTPVL 9 Unmodified _VPAVTTPVL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.5440673828125 1 896.545145 895.537869 0.015966 1.4315E-05 0.083328 7.4707E-05 0.099294 8.9022E-05 896.5454289952582 62.676 0.21204 62.676 62.611 62.823 0 12 8 2 0 0 0 0.03327 1 34974 34974 53.576 9.1686 1 497530 71354 6628;16309 47712 48753 83014 83014 0.08592143562668753 VPAVTTPVL 9 Unmodified _VPAVTTPVL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.7770385742188 2 448.776211 895.537869 0.29036 0.00013031 0.77964 0.00034988 1.07 0.00048019 448.77658576202356 63.247 0.34346 62.761 62.562 62.905 -0.48617 26 15 2 0 0 0 0.078417 2 34429 34429;34532 38.151 13.477 1 3422400 71355 6628;16309 47712 48753 83015;83016 83015 0.08592143562668753 VPAVTTPVL 9 Unmodified _VPAVTTPVL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.5468139648438 1 896.545145 895.537869 -0.30319 -0.00027182 1.629 0.0014604 1.3258 0.0011886 896.546933462069 63.205 0.30268 62.719 62.583 62.885 -0.48617 23 13 2 0 0 0 0.019979 3 34436 34436;34542;34554 63.563 6.9074 1 2011600 71356 6628;16309 47712 48753 83017;83018;83019 83017 0.08592143562668753 VPAVTTPVL 9 Unmodified _VPAVTTPVL_ 0 0 0 nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON;nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-7|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.7765808105469 2 448.776211 895.537869 1.0017 0.00044954 -0.79847 -0.00035834 0.20323 9.1206E-05 448.77603102335485 70.107 0.32271 63.931 63.795 64.118 -6.1757 31 18 2 0 0 0 0.0089973 1 45806 45806 86.121 25.732 1 31001000 71357 6628;16309 47712 48753 83020 83020 0.08592143562668753 VPAVVTAVF 9 Unmodified _VPAVVTAVF_ 0 0 0 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 ENSG00000141574|ENST00000269389|SECTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 902.535400390625 1 902.534581 901.527304 -0.24572 -0.00022177 0.06687 6.0353E-05 -0.17885 -0.00016142 902.5348049826654 78.97 0.29573 78.484 78.323 78.619 -0.48596 20 12 2 0 0 0 0.10925 2 43311 43211;43311 32.117 10.37 1 909630 71358 5356 47713 48754 83021;83022 83022 0.07260160908242597 VPAWELYL 8 Unmodified _VPAWELYL_ 0 0 0 REV__ENSG00000122965|ENST00000261741|RBM19 REV__ENSG00000122965|ENST00000261741|RBM19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2140197753906 2 495.768386 989.522219 NaN NaN NaN NaN NaN NaN NaN 52.291 1 52.291 51.791 52.791 0 0 0 0 0.95201 1 28934 28934 10.183 3.8293 1 + 71359 19363 47714 48755 83023 83023 0.027038570456056732 VPAWELYL 8 Unmodified _VPAWELYL_ 0 0 0 REV__ENSG00000122965|ENST00000261741|RBM19 REV__ENSG00000122965|ENST00000261741|RBM19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7686767578125 2 495.768386 989.522219 NaN NaN NaN NaN NaN NaN NaN 21.495 1 21.523 21.023 22.023 0.028357 0 0 0 0.95607 1 10909 10909 9.3474 0 1 + 71360 19363 47714 48755 83024 83024 0.027038570456056732 VPAYHILGSI 10 Unmodified _VPAYHILGSI_ 0 0 0 REV__ENSG00000093072|ENST00000399837|ADA2 REV__ENSG00000093072|ENST00000399837|ADA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3057250976562 2 535.305667 1068.59678 -0.096097 -5.1441E-05 2.0079 0.0010749 1.9118 0.0010234 535.3065257459587 69.518 0.41328 69.039 68.721 69.134 -0.47903 26 17 2 0 0 0 0.5905 1 37982 37982 11.64 0.81637 1 911790 + 71361 17923 47715 48756 83025 83025 0.06522619856991696 VPAYHILGSI 10 Unmodified _VPAYHILGSI_ 0 0 0 REV__ENSG00000093072|ENST00000399837|ADA2 REV__ENSG00000093072|ENST00000399837|ADA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3058471679688 2 535.305667 1068.59678 0.60438 0.00032353 0.01394 7.4624E-06 0.61832 0.00033099 535.3057113093577 68.973 0.3818 69 68.725 69.107 0.026314 38 17 3 0 0 0 0.5905 1 37904 37904 11.64 1.5664 1 2866700 + 71362 17923 47715 48756 83026 83026 0.06522619856991696 VPAYHILGSI 10 Unmodified _VPAYHILGSI_ 0 0 0 REV__ENSG00000093072|ENST00000399837|ADA2 REV__ENSG00000093072|ENST00000399837|ADA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 535.305667 1068.59678 0.60438 0.00032353 0.01394 7.4624E-06 0.61832 0.00033099 535.3057113093577 68.973 0.3818 69 68.725 69.107 0.026314 -0.0199 -0.00060621 NaN 11.64 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 2866700 + 71363 17923 47715 48756 0.06522619856991696 VPCLECNYKV 10 Unmodified _VPCLECNYKV_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.8740844726562 3 389.856077 1166.5464 -0.48725 -0.00018996 -0.047945 -1.8691E-05 -0.5352 -0.00020865 389.85560528962014 19.986 0.40842 19.986 19.888 20.296 0 83 41 3 0 0 0 0.2399 1 10148 10148 1.9064 0 1 2920600 71364 6400 47716 48757 83027 83027 -0.03020993854693188 VPCLENAVTAL 11 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))LENAVTAL_ VPC(1)LENAVTAL VPC(64)LENAVTAL 0 1 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8104858398438 2 593.810456 1185.60636 0.72653 0.00043142 0.2319 0.0001377 0.95843 0.00056913 593.8105023149 81.169 0.37746 74.993 74.789 75.167 -6.1757 35 21 2 0 0 0 0.01364 1 53231 53231 63.961 34.879 1 19996000 71365 6889 47717 48758 83028 83028 679 0.020980200801886895 VPCLENAVTAL 11 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))LENAVTAL_ 0 1 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 593.810456 1185.60636 0.07678 4.5593E-05 1.4346 0.0008519 1.5114 0.0008975 594.3129079382057 75.242 0.35983 75.288 75.245 75.605 0.045967 0.14743 0.00098916 NaN 63.961 22 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1083000 71366 6889 47717 48758 679 0.020980200801886895 VPCLHEVGF 9 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))LHEVGF_ VPC(1)LHEVGF VPC(97)LHEVGF 0 1 0 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 ENSG00000129521|ENST00000250457|EGLN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2609252929688 2 529.260402 1056.50625 0.89208 0.00047214 0.083507 4.4197E-05 0.97558 0.00051634 529.2604581427507 59.674 0.47971 53.559 53.3 53.78 -6.1147 46 26 2 0 0 0 0.0083087 1 38323 38323 97.075 70.191 1 241890000 71367 4147 47718 48759 83029 83029 416 -0.019741724629511737 VPCLIMISL 9 Unmodified _VPCLIMISL_ 0 0 0 ENSG00000135569|ENST00000258034|TAAR5 ENSG00000135569|ENST00000258034|TAAR5 ENSG00000135569|ENST00000258034|TAAR5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 494.7586669921875 2 494.782124 987.549696 1.3907 0.00068809 0.29055 0.00014376 1.6812 0.00083185 494.7824419848599 40.946 0.14319 36.338 36.244 36.387 -4.6079 12 8 2 0 0 0 0.18118 1 24519 24519 7.9102 0 1 5669000 71368 4721 47719 48760 83030 83030 0.0554230098998687 VPCLSSLNGEE 11 Unmodified _VPCLSSLNGEE_ 0 0 0 REV__ENST00000400246.5_1_22:32241096-32266721:+|nuORF REV__ENST00000400246.5_1_22:32241096-32266721:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7949829101562 2 574.268621 1146.52269 0.224 0.00012864 0.12026 6.9059E-05 0.34426 0.0001977 574.2681641408689 42.232 0.23758 42.223 42.123 42.36 -0.0088196 23 10 3 0 0 0 0.30049 1 22668 22668 6.2058 0.47393 1 8842200 + 71369 26593 47720 48761 83031 83031 -0.04471136087499872 VPCPHPGS 8 Unmodified _VPCPHPGS_ 0 0 0 REV__ENSG00000283787|ENST00000640310|PRR33 REV__ENSG00000283787|ENST00000640310|PRR33 MSMS AL20221201_MKP_PDAC_01 4 396.900634765625 2 397.186706 792.358859 NaN NaN NaN NaN NaN NaN NaN 76.643 1 70.467 69.967 70.967 -6.1757 0 0 0 0.95201 1 50132 50132 10.183 0 1 + 71370 24696 47721 48762 83032 83032 -0.04562644277075378 VPCRHDDVF 9 Unmodified _VPCRHDDVF_ 0 0 0 ENSG00000166126|ENST00000299155|AMN;ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENST00000558590.1_1_14:103394982-103395396:+|nuORF ENSG00000166126|ENST00000299155|AMN ENSG00000166126|ENST00000299155|AMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2516479492188 2 544.253108 1086.49166 0.1883 0.00010248 -0.36497 -0.00019864 -0.17667 -9.6154E-05 544.2532321935603 69.697 0.25964 69.697 69.557 69.816 0 20 12 2 0 0 0 0.54444 1 38807 38807 4.756 0.81161 1 837180 71371 7432 47722 48763 83033 83033 -0.04812244611071037 VPCVVVGHSM 10 Carbamidomethyl (C) _VPC(Carbamidomethyl (C))VVVGHSM_ VPC(1)VVVGHSM VPC(85)VVVGHSM 0 1 0 nc|ENSG00000106077|Q8NFV4-4|ABHD11;ENSG00000106077|ENST00000222800|ABHD11;ENST00000497897.5_1_7:73151846-73153108:-|nuORF;nc|ENSG00000106077|Q8NFV4-6|ABHD11 nc|ENSG00000106077|Q8NFV4-4|ABHD11 nc|ENSG00000106077|Q8NFV4-4|ABHD11 MSMS AL20221201_MKP_PDAC_01 4 542.7681274414062 2 542.767537 1083.52052 NaN NaN NaN NaN NaN NaN NaN 46.455 1 41.375 40.875 41.875 -5.0805 0 0 0 0.024856 1 28695 28695 85.272 56.785 1 71372 2397 47723 48764 83034 83034 237 -0.01789843306301009 VPDACKGG 8 Unmodified _VPDACKGG_ 0 0 0 nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1 nc|ENSG00000115380|Q12805-2|EFEMP1 nc|ENSG00000115380|Q12805-2|EFEMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 746.348388671875 1 746.350151 745.342874 -0.066086 -4.9323E-05 -1.3684 -0.0010213 -1.4345 -0.0010707 746.3493882222675 65.484 0.45519 65.484 65.32 65.776 0 25 18 2 0 0 0 0.80992 1 36614 36614 0.69038 0 1 898150 71373 3118 47724 48765 83035 83035 -0.03998350513973037 VPDAKIRIF 9 Unmodified _VPDAKIRIF_ 0 0 0 ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5502624511719 3 353.550082 1057.62842 1.0768 0.0003807 -0.20411 -7.2162E-05 0.8727 0.00030854 353.55000267728616 49.93 0.70249 49.881 49.568 50.271 -0.048824 90 34 4 0 0 0 0.15882 2 27039 26936;27039 27.223 16.424 1 10219000 71374 5845;13770;14274 47725 48766 83036;83037 83037 0.10190612610927019 VPDAKIRIF 9 Unmodified _VPDAKIRIF_ 0 0 0 ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.8216552734375 2 529.821484 1057.62842 1.1858 0.00062828 0.25685 0.00013608 1.4427 0.00076436 529.8215876658295 49.945 0.4016 49.896 49.665 50.066 -0.048824 26 19 2 0 0 0 0.29507 1 27011 27011 24.021 13.197 1 1530100 71375 5845;13770;14274 47725 48766 83038 83038 0.10190612610927019 VPDAKIRIF 9 Unmodified _VPDAKIRIF_ 0 0 0 ENSG00000165496|ENST00000298283|RPL10L;ENSG00000147403|ENST00000369817|RPL10;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENST00000491035.5_1_X:153626749-153628283:+|nuORF ENSG00000165496|ENST00000298283|RPL10L MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5504455566406 3 353.550082 1057.62842 1.8429 0.00065157 -0.77017 -0.00027229 1.0727 0.00037927 353.54988962693466 55.278 0.52546 49.357 49.113 49.638 -5.9211 68 32 3 0 0 0 0.15882 2 35124 35124;35262 27.223 17.073 1 25907000 71376 5845;13770;14274 47725 48766 83039;83040 83039 0.10190612610927019 VPDAKKACTYI 11 Carbamidomethyl (C) _VPDAKKAC(Carbamidomethyl (C))TYI_ VPDAKKAC(1)TYI VPDAKKAC(69)TYI 0 1 0 ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.331298828125 2 633.331556 1264.64856 0.71762 0.00045449 -0.35025 -0.00022183 0.36736 0.00023266 633.3313852714357 34.763 0.27974 30.668 30.473 30.752 -4.0951 27 16 2 0 0 0 0.0091632 1 20036 20036 68.76 26.804 1 6467800 71377 3388 47726 48767 83041 83041 343 0.026819954885922925 VPDDSSDDSEA 11 Unmodified _VPDDSSDDSEA_ 0 0 0 ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA ENSG00000147174|ENST00000373696|GCNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.4787902832031 3 379.479045 1135.41531 -0.19845 -7.5307E-05 -0.018546 -7.0379E-06 -0.21699 -8.2345E-05 379.81317264859774 48.957 0.19453 48.957 48.828 49.023 0 22 9 3 0 0 0 0.72952 1 26913 26913 0.50596 0 1 5266000 71378 5831 47727 48768 83042 83042 -0.14698434488036582 VPDEIGVVAIC 11 Unmodified _VPDEIGVVAIC_ 0 0 0 REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000067842|Q16720-8|ATP2B3 REV__nc|ENSG00000058668|P23634-5|ATP2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.30029296875 2 557.794275 1113.574 0.76893 0.0004289 -1.8323 -0.0010221 -1.0634 -0.00059315 557.792625083128 47.9 0.36682 47.861 47.6 47.967 -0.038643 40 17 3 0 0 0 0.6249 1 25759 25759 10.074 0 1 10477000 + 71379 17313;17427 47728 48769 83043 83043 0.021752326772229935 VPDELLPHSFH 11 Unmodified _VPDELLPHSFH_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8885803222656 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 37.208 1 36.937 36.437 37.437 -0.27133 0 0 0 0.94144 1 19546 19546 0.50596 0 1 + 71380 24045 47729 48770 83044 83044 0.0072018456346540916 VPDELLTLY 9 Unmodified _VPDELLTLY_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000528580.1_1_8:145060208-145060527:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1062.906005859375 1 1062.57175 1061.56448 -0.42596 -0.00045262 -0.052582 -5.5872E-05 -0.47854 -0.00050849 1062.572161694744 82.866 0.28667 82.866 82.673 82.96 0 22 12 2 0 0 0 0.27545 1 45912 45912 25.399 0 1 725170 71381 8764 47730 48771 83045 83045 0.03615787663329684 VPDELLTLY 9 Unmodified _VPDELLTLY_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000528580.1_1_8:145060208-145060527:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7901000976562 2 531.789515 1061.56448 0.45933 0.00024427 1.6555 0.00088037 2.1148 0.0011246 531.7899535237027 83.325 0.38003 82.828 82.672 83.052 -0.49751 38 15 4 0 0 0 0.34134 1 45613 45613 21.747 0 1 1611300 71382 8764 47730 48771 83046 83046 0.03615787663329684 VPDELLTLY 9 Unmodified _VPDELLTLY_ 0 0 0 ENSG00000178685|ENST00000313028|PARP10;ENST00000528580.1_1_8:145060208-145060527:-|nuORF ENSG00000178685|ENST00000313028|PARP10 ENSG00000178685|ENST00000313028|PARP10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1062.57175 1061.56448 0.39474 0.00041944 -0.80275 -0.00085298 -0.408 -0.00043353 1063.5718234123467 83.296 0.28991 82.799 82.672 82.962 -0.49751 -0.033551 -0.00064634 NaN 25.399 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 889630 71383 8764 47730 48771 0.03615787663329684 VPDEVLGLIY 10 Unmodified _VPDEVLGLIY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4;nc|ENSG00000167608|Q7Z404-3|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3118286132812 2 559.310615 1116.60668 0.39505 0.00022096 0.86474 0.00048366 1.2598 0.00070461 559.3110697775492 90.945 0.29169 90.945 90.788 91.08 0 30 13 3 0 0 0 0.69377 1 50255 50255 3.5965 0 1 1034400 71384 7636 47731 48772 83047 83047 0.053037630717199136 VPDEVLGLIY 10 Unmodified _VPDEVLGLIY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4;nc|ENSG00000167608|Q7Z404-3|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3114624023438 2 559.310615 1116.60668 0.62217 0.00034798 0.21351 0.00011942 0.83567 0.0004674 559.3108614278248 91.426 0.46002 90.931 90.663 91.124 -0.49457 47 22 3 0 0 0 0.46514 2 49946 49946;50049 18.146 8.0724 1 1897300 71385 7636 47731 48772 83048;83049 83048 0.053037630717199136 VPDEVLGLIY 10 Unmodified _VPDEVLGLIY_ 0 0 0 nc|ENSG00000167608|Q7Z404-1|TMC4;ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404|TMC4;nc|ENSG00000167608|Q7Z404-3|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 nc|ENSG00000167608|Q7Z404-1|TMC4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 559.310615 1116.60668 1.1213 0.00062714 2.8781 0.0016097 3.9994 0.0022369 559.3118410355028 90.902 0.16586 90.939 90.817 90.983 0.036499 0.0003284 0.0025179 NaN 18.146 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2710400 71386 7636 47731 48772 0.053037630717199136 VPDFRYAPS 9 Unmodified _VPDFRYAPS_ 0 0 0 REV__ENSG00000134153|ENST00000256545|EMC7 REV__ENSG00000134153|ENST00000256545|EMC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1793518066406 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 97.488 1 97.488 96.988 97.988 0 0 0 0 0.84564 1 53866 53866 1.0715 0.10919 1 + 71387 19954 47732 48773 83050 83050 -0.0097911659086094 VPDGPHLHLY 10 Unmodified _VPDGPHLHLY_ 0 0 0 ENSG00000151715|ENST00000281441|TMEM45B;ENST00000527754.1_1_11:129698120-129727360:+|nuORF ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MSMS AL20221201_MKP_PDAC_01 4 383.535888671875 3 383.201341 1146.58219 NaN NaN NaN NaN NaN NaN NaN 49.594 1 44.055 43.555 44.555 -5.5391 0 0 0 0.33727 1 30997 30997 34.932 22.757 1 71388 6141 47733 48774 83051 83051 0.014765477088531043 VPDHMNQI 8 Unmodified _VPDHMNQI_ 0 0 0 REV__ENSG00000078114|ENST00000377122|NEBL REV__ENSG00000078114|ENST00000377122|NEBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.231201171875 2 477.229102 952.443651 0.53939 0.00025741 -0.43171 -0.00020603 0.10768 5.1388E-05 477.23092631133704 75.999 0.46586 75.519 75.274 75.74 -0.47945 44 19 3 0 0 0 0.77907 1 41537 41537 10.183 3.8293 1 1070000 + 71389 17622 47734 48775 83052 83052 -0.03447318531118526 VPDHVVWSL 9 Unmodified _VPDHVVWSL_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.5994262695312 2 526.282192 1050.54983 NaN NaN NaN NaN NaN NaN NaN 65.016 1 65.016 64.516 65.516 0 0 0 0 0.7818 1 36269 36269 6.7232 0.96273 1 71390 9424;5390;9343 47735 48776 83053 83053 0.026577603058512977 VPDHVVWSL 9 Unmodified _VPDHVVWSL_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.28271484375 2 526.282192 1050.54983 0.081661 4.2977E-05 1.737 0.00091416 1.8187 0.00095713 526.2822462785347 65.458 0.60352 64.973 64.663 65.267 -0.48428 82 27 4 0 0 0 0.013323 3 35662 35659;35662;35766 71.134 36.732 1 7866000 71391 9424;5390;9343 47735 48776 83054;83055;83056 83055 0.026577603058512977 VPDHVVWSL 9 Unmodified _VPDHVVWSL_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENST00000505282.1_1_4:66959972-66960239:+|nuORF;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3;ENSG00000185201|ENST00000616316|IFITM2 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2826538085938 2 526.282192 1050.54983 0.80947 0.00042601 -2.2309 -0.0011741 -1.4215 -0.00074809 526.2818505707091 69.919 0.84308 63.743 63.325 64.168 -6.1757 83 47 3 0 0 0 0.013323 3 45795 45553;45665;45795 71.134 18.865 1 58974000 71392 9424;5390;9343 47735 48776 83057;83058;83059 83059 0.026577603058512977 VPDIEFKIT 9 Unmodified _VPDIEFKIT_ 0 0 0 ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000480463.6_1_6:52943619-52957704:+|nuORF ENST00000480463.6_1_6:52943619-52957704:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2974243164062 2 531.297507 1060.58046 0.34699 0.00018435 0.46828 0.0002488 0.81527 0.00043315 531.2976683659597 86.783 0.36174 86.783 86.613 86.975 0 45 20 3 0 0 0 0.49272 1 48113 48113 7.9102 0.62092 1 1669300 71393 2864 47736 48777 83060 83060 0.05259493900234702 VPDIEFKIT 9 Unmodified _VPDIEFKIT_ 0 0 0 ENST00000480463.6_1_6:52943619-52957704:+|nuORF;nc|ENSG00000112146|Q9UK97-3|FBXO9;ENSG00000112146|ENST00000323557|FBXO9;nc|ENSG00000112146|Q9UK97|FBXO9 ENST00000480463.6_1_6:52943619-52957704:+|nuORF ENST00000480463.6_1_6:52943619-52957704:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2974853515625 2 531.297507 1060.58046 0.41123 0.00021848 -0.055014 -2.9229E-05 0.35621 0.00018926 531.2973795147956 87.359 0.49304 86.855 86.608 87.101 -0.50423 66 20 5 0 0 0 0.28047 3 47807 47709;47807;47909 18.135 6.4947 1 9006700 71394 2864 47736 48777 83061;83062;83063 83062 0.05259493900234702 VPDKDNPWSY 10 Unmodified _VPDKDNPWSY_ 0 0 0 REV__ENSG00000117593|ENST00000649689|DARS2 REV__ENSG00000117593|ENST00000649689|DARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.2871704101562 2 610.782753 1219.55095 0.13968 8.5316E-05 3.6987 0.0022591 3.8384 0.0023444 610.7850547416889 82.829 0.16429 82.829 82.723 82.888 0 12 7 2 0 0 0 0.71276 1 45945 45945 1.4819 0.15237 1 396920 + 71395 19115 47737 48778 83064 83064 -0.05004070115910508 VPDLCKWEE 9 Unmodified _VPDLCKWEE_ 0 0 0 REV__ENSG00000197608|ENST00000594440|ZNF841 REV__ENSG00000197608|ENST00000594440|ZNF841 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7932739257812 2 559.762975 1117.5114 0.37483 0.00020982 0.5915 0.0003311 0.96634 0.00054092 559.7626937827757 61.579 0.25154 61.579 61.455 61.707 0 16 11 2 0 0 0 0.19613 1 34294 34294 12.532 5.8084 1 857230 + 71396 23946 47738 48779 83065 83065 -0.04265913390986498 VPDLPEAL 8 Unmodified _VPDLPEAL_ 0 0 0 REV__ENSG00000122729|ENST00000309951|ACO1 REV__ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.467529296875 1 853.466561 852.459284 0.97249 0.00082998 0.75903 0.00064781 1.7315 0.0014778 853.4670971502145 88.991 0.50768 82.815 82.551 83.058 -6.1757 51 28 2 0 0 0 0.11943 2 58723 58602;58723 93.883 0 1 25390000 + 71397 19356 47739 48780 83066;83067 83067 0.027152912575729715 VPDLVALL 8 Unmodified _VPDLVALL_ 0 0 0 ENSG00000204851|ENST00000599531|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B ENSG00000204851|ENST00000599531|PNMA8B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2640686035156 2 420.265479 838.516405 NaN NaN NaN NaN NaN NaN NaN 35.435 1 35.46 34.96 35.96 0.024967 0 0 0 0.93587 1 18732 18732 13.508 0 1 71398 10332 47740 48781 83068 83068 0.09068758533931032 VPDLVQEYI 9 Unmodified _VPDLVQEYI_ 0 0 0 ENSG00000173614|ENST00000377205|NMNAT1 ENSG00000173614|ENST00000377205|NMNAT1 ENSG00000173614|ENST00000377205|NMNAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2898559570312 2 538.28714 1074.55973 0.33474 0.00018019 0.96421 0.00051902 1.2989 0.00069921 538.2878196589393 89.083 0.53979 88.579 88.394 88.934 -0.50423 52 23 4 0 0 0 0.43463 2 48666 48666;48767 10.824 6.0679 1 1160800 71399 8349 47741 48782 83069;83070 83069 0.02542903520566142 VPDLVQEYI 9 Unmodified _VPDLVQEYI_ 0 0 0 ENSG00000173614|ENST00000377205|NMNAT1 ENSG00000173614|ENST00000377205|NMNAT1 ENSG00000173614|ENST00000377205|NMNAT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 538.28714 1074.55973 0.2564 0.00013801 1.5075 0.00081148 1.7639 0.00094949 538.2872989380402 88.542 0.35448 88.542 88.383 88.738 0 -0.018692 0.000393 NaN 10.824 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 442260 71400 8349 47741 48782 0.02542903520566142 VPDMDDEEGE 10 Unmodified _VPDMDDEEGE_ 0 0 0 nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET;ENST00000497538.1_1_3:155705188-155705881:+|nuORF;ENST00000552169.1_1_12:107665281-107665620:+|nuORF nc|ENSG00000119335|Q01105-3|SET nc|ENSG00000119335|Q01105-3|SET MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1417236328125 3 379.141376 1134.4023 NaN NaN NaN NaN NaN NaN NaN 33.718 1 33.718 33.218 34.218 0 0 0 0 0.98914 1 17707 17707 0.77653 0.50751 1 71401 3426 47742 48783 83071 83071 -0.15952588871778062 VPDNRRLFEL 10 Unmodified _VPDNRRLFEL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2352294921875 3 420.234933 1257.68297 0.33907 0.00014249 0.24974 0.00010495 0.58881 0.00024744 420.2350759192503 52.996 0.60421 52.544 52.318 52.922 -0.45173 76 30 3 0 0 0 0.18021 1 28580 28580 24.882 9.9244 1 21177000 71402 551 47743 48784 83072 83072 0.06443579691699597 VPDNRRLFEL 10 Unmodified _VPDNRRLFEL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.2351989746094 3 420.234933 1257.68297 0.6266 0.00026332 0.42721 0.00017953 1.0538 0.00044285 420.23511296425835 52.688 0.42325 52.627 52.424 52.847 -0.061142 54 20 4 0 0 0 0.48505 2 28490 28490;28592 14.957 4.2755 1 6618100 71403 551 47743 48784 83073;83074 83073 0.06443579691699597 VPDNRRLFEL 10 Unmodified _VPDNRRLFEL_ 0 0 0 ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2 ENSG00000024422|ENST00000263277|EHD2 ENSG00000024422|ENST00000263277|EHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5693359375 3 420.234933 1257.68297 1.0597 0.00044534 0.7231 0.00030387 1.7829 0.00074922 420.2351567925381 57.76 0.38789 51.733 51.535 51.923 -6.0275 45 21 3 0 0 0 0.11824 2 37054 36908;37054 31.636 12.568 1 41473000 71404 551 47743 48784 83075;83076 83076 0.06443579691699597 VPDPEFSGKSY 11 Unmodified _VPDPEFSGKSY_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2891845703125 2 613.290411 1224.56627 0.33252 0.00020393 0.1586 9.7266E-05 0.49112 0.0003012 613.2903804842103 37.205 0.29793 37.205 37.018 37.316 0 26 14 2 0 0 0 0.064626 1 19739 19739 57.108 40.958 1 3330400 71405 4953 47744 48785 83077 83077 -0.03703203318696069 VPDPEFSGKSY 11 Unmodified _VPDPEFSGKSY_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.7915649414062 2 613.290411 1224.56627 1.0281 0.00063052 -0.1599 -9.8064E-05 0.86819 0.00053246 613.792010788597 42.618 0.21358 37.934 37.858 38.072 -4.6846 17 13 2 0 0 0 0.017394 1 25784 25784 70.496 47.759 1 6954300 71406 4953 47744 48785 83078 83078 -0.03703203318696069 VPDPNVIKL 9 Unmodified _VPDPNVIKL_ 0 0 0 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B ENST00000569319.5_1_16:70399881-70405886:+|nuORF ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.8005065917969 2 497.800217 993.585882 -0.28506 -0.0001419 -0.1519 -7.5615E-05 -0.43696 -0.00021752 497.8003286977874 55.309 0.49769 55.309 55.054 55.552 0 39 21 2 0 0 0 0.15882 1 30682 30682 27.223 10.281 1 6443200 71407 6512 47745 48786 83079 83079 0.0888321748270755 VPDPNVIKL 9 Unmodified _VPDPNVIKL_ 0 0 0 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B ENST00000569319.5_1_16:70399881-70405886:+|nuORF ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7999267578125 2 497.800217 993.585882 -0.045198 -2.25E-05 -0.60127 -0.00029931 -0.64647 -0.00032181 497.80018850368754 55.801 0.57454 55.323 55.026 55.601 -0.47798 80 27 4 0 0 0 0.021948 3 30377 30171;30273;30377 61.602 37.581 1 23270000 71408 6512 47745 48786 83080;83081;83082 83082 0.0888321748270755 VPDPNVIKL 9 Unmodified _VPDPNVIKL_ 0 0 0 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B ENST00000569319.5_1_16:70399881-70405886:+|nuORF ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.8009948730469 2 497.800217 993.585882 1.2018 0.00059828 -0.32981 -0.00016418 0.87203 0.0004341 497.80009800838354 61.653 0.615 55.478 55.167 55.782 -6.1757 71 31 3 0 0 0 0.0085366 3 39596 39596;39723;39845 90.135 54.008 1 123920000 71409 6512 47745 48786 83083;83084;83085 83083 0.0888321748270755 VPDPNVIKL 9 Unmodified _VPDPNVIKL_ 0 0 0 ENST00000569319.5_1_16:70399881-70405886:+|nuORF;ENST00000569771.5_1_16:70395504-70405886:+|nuORF;ENST00000562140.2_1_16:70398455-70404584:+|nuORF;nc|ENSG00000260537|Q9UMR2-3|DDX19B;nc|ENSG00000168872|Q9NUU7-2|DDX19A;nc|ENSG00000260537|Q9UMR2-2|DDX19B;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B ENST00000569319.5_1_16:70399881-70405886:+|nuORF ENST00000569319.5_1_16:70399881-70405886:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.800217 993.585882 0.044992 2.2397E-05 -1.4579 -0.00072576 -1.413 -0.00070337 497.80010724560015 55.459 0.13906 55.391 55.317 55.456 -0.068741 0.015537 -0.0010487 NaN 90.135 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1637200 71410 6512 47745 48786 0.0888321748270755 VPDPQELL 8 Unmodified _VPDPQELL_ 0 0 0 ENST00000482648.5_1_9:135981358-135982559:-|nuORF ENST00000482648.5_1_9:135981358-135982559:-|nuORF ENST00000482648.5_1_9:135981358-135982559:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7486267089844 2 455.74765 909.480748 0.65167 0.00029699 -0.6581 -0.00029993 -0.0064386 -2.9344E-06 455.7477451437814 66.501 0.26842 66.501 66.348 66.616 0 18 11 2 0 0 0 0.80232 1 37087 37087 5.2307 0 1 767260 71411 14108 47746 48787 83086 83086 0.02238676286287955 VPDQAPSTQL 10 Unmodified _VPDQAPSTQL_ 0 0 0 REV__ENST00000553596.2_1_14:32545343-32545523:-|nuORF REV__ENST00000553596.2_1_14:32545343-32545523:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.2728271484375 2 528.272021 1054.52949 0.61077 0.00032265 0.81332 0.00042966 1.4241 0.00075231 528.2724386055222 85.729 0.55342 79.554 79.241 79.794 -6.1757 71 31 3 0 0 0 0.35903 1 56464 56464 24.021 1.2843 1 113880000 + 71412 28737 47747 48788 83087 83087 0.0044054485538254085 VPDRYLGY 8 Unmodified _VPDRYLGY_ 0 0 0 REV__ENSG00000174652|ENST00000592904|ZNF266 REV__ENSG00000174652|ENST00000592904|ZNF266 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.7527465820312 2 491.753267 981.491981 0.43001 0.00021146 -1.3647 -0.00067109 -0.93467 -0.00045963 491.75284318344904 46.444 0.32192 41.364 41.13 41.452 -5.0805 40 25 2 0 0 0 0.57045 1 28690 28690 28.487 3.0875 1 74118000 + 71413 22806 47748 48789 83088 83088 0.0004949838042875854 VPDRYLGY 8 Unmodified _VPDRYLGY_ 0 0 0 REV__ENSG00000174652|ENST00000592904|ZNF266 REV__ENSG00000174652|ENST00000592904|ZNF266 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 491.753267 981.491981 -0.13765 -6.769E-05 -1.5954 -0.00078456 -1.7331 -0.00085225 491.7528069415218 41.621 0.22206 41.315 41.211 41.433 -0.30682 -0.018518 -0.001065 NaN 28.487 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 16455000 + 71414 22806 47748 48789 0.0004949838042875854 VPDSSGPERIL 11 Unmodified _VPDSSGPERIL_ 0 0 0 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.3103637695312 2 585.311677 1168.6088 -0.32761 -0.00019175 0.18814 0.00011012 -0.13946 -8.1629E-05 585.311761705177 41.677 0.72188 41.677 41.364 42.086 0 144 37 5 0 0 0 0.012962 3 22367 22367;22481;22594 78.06 28.127 1 159920000 71415 7296 47749 48790 83089;83090;83091 83089 0.031241918095247456 VPDSSGPERIL 11 Unmodified _VPDSSGPERIL_ 0 0 0 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.3121948242188 2 585.311677 1168.6088 -0.32331 -0.00018924 0.21872 0.00012802 -0.10459 -6.1219E-05 585.3117238713937 41.96 0.30242 41.653 41.495 41.798 -0.30682 23 14 2 0 0 0 0.044017 1 22234 22234 55.235 13.395 1 7702900 71416 7296 47749 48790 83092 83092 0.031241918095247456 VPDSSGPERIL 11 Unmodified _VPDSSGPERIL_ 0 0 0 ENSG00000165119|ENST00000376263|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;nc|ENSG00000165119|P61978-3|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK ENSG00000165119|ENST00000376263|HNRNPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3118286132812 2 585.311677 1168.6088 0.92234 0.00053986 -0.12149 -7.1108E-05 0.80085 0.00046875 585.311592545953 47.269 0.79161 42.189 41.83 42.622 -5.0805 172 56 4 0 0 0 9.0484E-10 4 29101 29101;29237;29368;29491 118.21 68.655 1 309030000 71417 7296 47749 48790 83093;83094;83095;83096 83093 0.031241918095247456 VPDTAFSLSL 10 Unmodified _VPDTAFSLSL_ 0 0 0 nc|ENSG00000100105|Q9HBE1-4|PATZ1;ENST00000465287.1_1_22:31737393-31739122:-|nuORF nc|ENSG00000100105|Q9HBE1-4|PATZ1 nc|ENSG00000100105|Q9HBE1-4|PATZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2793579101562 2 525.279315 1048.54408 0.3549 0.00018642 0.59468 0.00031237 0.94958 0.0004988 525.2793840108019 72.02 0.43934 72.02 71.819 72.258 0 26 20 2 0 0 0 0.5905 1 40064 40064 11.64 3.047 1 1710400 71418 16081 47750 48791 83097 83097 0.02174617003538515 VPDTASIIAGF 11 Unmodified _VPDTASIIAGF_ 0 0 0 REV__nc|ENSG00000065923|Q96T83|SLC9A7 REV__nc|ENSG00000065923|Q96T83|SLC9A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7929077148438 2 545.792589 1089.57063 0.14544 7.9381E-05 0.36466 0.00019903 0.5101 0.00027841 545.792705538202 101.16 0.14283 101.02 100.96 101.11 -0.13293 14 5 4 0 0 0 0.60863 1 55210 55210 19.257 3.1079 1 13536000 + 71419 17391 47751 48792 83098 83098 0.029423058948623293 VPDTLDEEANE 11 Unmodified _VPDTLDEEANE_ 0 0 0 REV__nc|ENSG00000197694|Q13813-3|SPTAN1 REV__nc|ENSG00000197694|Q13813-3|SPTAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.269775390625 2 616.269872 1230.52519 NaN NaN NaN NaN NaN NaN NaN 84.328 1 84.328 83.828 84.828 0 0 0 0 0.9435 1 46752 46752 0 0 1 + 71420 23953 47752 48793 83099 83099 -0.0808500914886281 VPDTLTKLS 9 Unmodified _VPDTLTKLS_ 0 0 0 ENST00000396185.7_1_3:41281229-41281280:+|nuORF ENST00000396185.7_1_3:41281229-41281280:+|nuORF ENST00000396185.7_1_3:41281229-41281280:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.21923828125 2 487.281857 972.549162 0.29971 0.00014604 -0.2546 -0.00012406 0.045115 2.1984E-05 487.2815926816909 66.05 0.21485 66.05 65.938 66.153 0 14 10 2 0 0 0 0.18521 1 36820 36820 16.942 7.5949 1 897030 71421 12787 47753 48794 83100 83100 0.061789208661252815 VPDTLYMVN 9 Unmodified _VPDTLYMVN_ 0 0 0 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.259765625 2 526.260068 1050.50558 -0.23363 -0.00012295 2.5476 0.0013407 2.3139 0.0012177 526.2612814643911 78.479 0.55216 77.993 77.864 78.416 -0.48596 51 23 4 0 0 0 0.41742 1 43124 43124 11.64 2.2929 1 1223000 71422 434 47754 48795 83101 83101 -0.01765011902648439 VPDTLYMVN 9 Unmodified _VPDTLYMVN_ 0 0 0 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 ENSG00000011114|ENST00000334746|BTBD7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.2869873046875 2 526.260068 1050.50558 1.1812 0.00062163 0.79852 0.00042023 1.9797 0.0010419 526.2607319469582 86.096 0.25974 79.92 79.777 80.037 -6.1757 16 13 2 0 0 0 0.1474 1 56661 56661 28.487 0 1 9529500 71423 434 47754 48795 83102 83102 -0.01765011902648439 VPDTNYIF 8 Unmodified _VPDTNYIF_ 0 0 0 nc|ENSG00000119414|O00743-3|PPP6C;ENSG00000119414|ENST00000373547|PPP6C nc|ENSG00000119414|O00743-3|PPP6C nc|ENSG00000119414|O00743-3|PPP6C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7392578125 2 484.739825 967.465098 NaN NaN NaN NaN NaN NaN NaN 74.168 1 74.168 73.668 74.668 0 0 0 0 0.97444 1 41277 41277 2.8892 0 1 71424 3435 47755 48796 83103 83103 -0.019936102307724468 VPDTRQVTF 9 Unmodified _VPDTRQVTF_ 0 0 0 REV__nc|ENSG00000163531|O94856|NFASC REV__nc|ENSG00000163531|O94856|NFASC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7864379882812 2 531.782556 1061.55056 -0.22324 -0.00011871 0.40498 0.00021536 0.18174 9.6647E-05 532.2836128650085 19.253 0.15536 19.253 19.185 19.34 0 21 9 3 0 0 0 0.4887 1 9639 9639 8.1555 0.8663 1 1439100 + 71425 21780 47756 48797 83104 83104 0.022245549548870258 VPDTSRIYVAL 11 Unmodified _VPDTSRIYVAL_ 0 0 0 nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT nc|ENSG00000126756|Q9UBK9-2|UXT nc|ENSG00000126756|Q9UBK9-2|UXT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 617.3455810546875 2 617.34552 1232.67649 -0.064208 -3.9638E-05 0.43724 0.00026993 0.37303 0.00023029 617.3457607839085 61.372 0.46259 60.883 60.674 61.137 -0.48932 56 21 3 0 0 0 0.16388 2 33468 33367;33468 35.08 20.206 1 7550700 71426 3964 47757 48798 83105;83106 83106 0.06945641740321662 VPDTSRIYVAL 11 Unmodified _VPDTSRIYVAL_ 0 0 0 nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT nc|ENSG00000126756|Q9UBK9-2|UXT nc|ENSG00000126756|Q9UBK9-2|UXT MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.3455810546875 2 617.34552 1232.67649 0.57961 0.00035782 0.58194 0.00035926 1.1616 0.00071708 617.3460421213388 67.118 0.68827 60.942 60.664 61.352 -6.1757 94 38 3 0 0 0 0.00041721 2 43770 43641;43770 89.609 53.102 1 43751000 71427 3964 47757 48798 83107;83108 83108 0.06945641740321662 VPDTSRIYVAL 11 Unmodified _VPDTSRIYVAL_ 0 0 0 nc|ENSG00000126756|Q9UBK9-2|UXT;ENSG00000126756|ENST00000333119|UXT nc|ENSG00000126756|Q9UBK9-2|UXT nc|ENSG00000126756|Q9UBK9-2|UXT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 617.34552 1232.67649 0.55372 0.00034183 -1.437 -0.00088711 -0.88327 -0.00054528 617.3447283032881 60.945 0.18078 60.902 60.845 61.026 -0.04351 -0.0068235 -0.0023202 NaN 89.609 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1208400 71428 3964 47757 48798 0.06945641740321662 VPDTSTYQY 9 Unmodified _VPDTSTYQY_ 0 0 0 ENST00000489437.1_1_3:50144918-50148299:+|nuORF;ENSG00000003756|ENST00000347869|RBM5 ENST00000489437.1_1_3:50144918-50148299:+|nuORF ENST00000489437.1_1_3:50144918-50148299:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.24365234375 2 537.242929 1072.47131 -0.40499 -0.00021758 -0.023167 -1.2446E-05 -0.42815 -0.00023002 537.2429816920697 34.642 0.44367 34.642 34.384 34.827 0 48 22 3 0 0 0 0.30562 1 18323 18323 16.942 2.104 1 2278100 71429 271 47758 48799 83109 83109 -0.06203136789918062 VPDTSVEKGF 10 Unmodified _VPDTSVEKGF_ 0 0 0 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 ENSG00000163872|ENST00000305135|YEATS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7747192382812 2 539.774396 1077.53424 0.25168 0.00013585 -0.6774 -0.00036564 -0.42572 -0.00022979 539.7738807334772 94.056 0.53859 93.635 93.37 93.908 -0.42044 90 28 4 0 0 0 0.60623 1 51504 51504 10.824 2.6684 1 15803000 71430 7087 47759 48800 83110 83110 -0.001425710018565951 VPDVGPVP 8 Unmodified _VPDVGPVP_ 0 0 0 ENSG00000144815|ENST00000273347|NXPE3 REV__nc|ENSG00000141027|O75376-2|NCOR1 REV__nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 779.4284057617188 1 779.429781 778.422505 1.0394 0.00081013 -0.83596 -0.00065157 0.20344 0.00015857 779.4290958238545 83.115 0.35656 76.939 76.768 77.125 -6.1757 29 19 2 0 0 0 0.44122 1 54558 54558 40.449 3.9824 1 7711900 + 71431 20513 47760 48801 83111 83111 0.02443039431670968 VPDVSLEGPE 10 Unmodified _VPDVSLEGPE_ 0 0 0 ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK ENSG00000124942|ENST00000378024|AHNAK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2600708007812 2 521.258579 1040.50261 NaN NaN NaN NaN NaN NaN NaN 40.866 1 40.866 40.366 41.366 0 0 0 0 0.61917 1 21996 21996 20.454 3.5113 1 71432 3826 47761 48802 83112 83112 -0.01602563755795927 VPDYMPVVY 9 Unmodified _VPDYMPVVY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2673950195312 2 541.764986 1081.51542 0.53952 0.00029229 -0.18034 -9.7701E-05 0.35918 0.00019459 541.7646348760459 80.702 0.34422 74.526 74.369 74.713 -6.1757 31 18 2 0 0 0 0.06187 2 52945 52895;52945 42.095 31.271 1 24024000 71433 9907 47762 48803 83113;83114 83114 -0.022078238972653708 VPEAASTLVSM 11 Unmodified _VPEAASTLVSM_ 0 0 0 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 ENSG00000135249|ENST00000257700|RINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7857666015625 2 552.783907 1103.55326 0.78828 0.00043575 1.5544 0.00085927 2.3427 0.001295 552.7849204162941 67.241 0.54957 61.065 60.789 61.339 -6.1757 50 30 2 0 0 0 0.10976 2 43899 43761;43899 60.074 41.928 1 27742000 71434 4681 47763 48804 83115;83116 83116 0.005626422975637979 VPEANEDERL 10 Unmodified _VPEANEDERL_ 0 0 0 REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF REV__ENST00000472831.5_1_5:176884436-176895158:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.191650390625 3 391.19117 1170.55168 0.23045 9.015E-05 1.0298 0.00040285 1.2602 0.000493 391.5259677469886 67.086 0.2551 67.086 66.971 67.226 0 22 10 3 0 0 0 0.69064 1 37415 37415 1.9064 0.31409 1 1208800 + 71435 18888 47764 48805 83117 83117 -0.026772754668627385 VPEAVWLAY 9 Unmodified _VPEAVWLAY_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;ENST00000505431.1_1_5:37205375-37206408:-|nuORF nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2774658203125 2 524.279118 1046.54368 -0.39331 -0.0002062 -1.0088 -0.00052889 -1.4021 -0.00073509 524.2788022733124 30.334 0.48745 30.334 30.12 30.607 0 53 23 3 0 0 0 0.49272 1 15897 15897 7.9102 1.187 1 2793900 71436 9979 47765 48806 83118 83118 0.02227242074309288 VPEDCLHQD 9 Unmodified _VPEDCLHQD_ 0 0 0 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 ENSG00000164715|ENST00000297293|LMTK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.75048828125 2 528.226756 1054.43896 0.40428 0.00021355 0.070493 3.7236E-05 0.47477 0.00025079 528.227467336685 76.175 0.25494 76.175 76.086 76.341 0 21 10 3 0 0 0 0.20727 1 42371 42371 7.9102 0.62092 1 691020 71437 7234 47766 48807 83119 83119 -0.08608247464553642 VPEDGIGSVI 10 Unmodified _VPEDGIGSVI_ 0 0 0 ENST00000418047.5_3_22:30681611-30682125:-|nuORF;ENST00000434987.5_3_22:30681611-30689737:-|nuORF;ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1 ENST00000418047.5_3_22:30681611-30682125:-|nuORF ENST00000418047.5_3_22:30681611-30682125:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2630004882812 2 493.263665 984.512776 -0.65767 -0.0003244 0.21157 0.00010436 -0.4461 -0.00022004 493.2639245186048 27.975 0.36494 27.975 27.804 28.169 0 45 21 3 0 0 0 0.14917 2 14470 14366;14470 39.957 3.2239 1 13410000 71438 10660 47767 48808 83120;83121 83121 0.019900439694538363 VPEDGIGSVI 10 Unmodified _VPEDGIGSVI_ 0 0 0 ENST00000418047.5_3_22:30681611-30682125:-|nuORF;ENST00000434987.5_3_22:30681611-30689737:-|nuORF;ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1 ENST00000418047.5_3_22:30681611-30682125:-|nuORF ENST00000418047.5_3_22:30681611-30682125:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2636413574219 2 493.263665 984.512776 0.72967 0.00035992 -0.6714 -0.00033118 0.058266 2.874E-05 493.26348144212767 31.883 0.39405 28.187 28 28.394 -3.6958 52 21 3 0 0 0 0.063761 1 18062 18062 54.774 11.001 1 47529000 71439 10660 47767 48808 83122 83122 0.019900439694538363 VPEDLLPVY 9 Unmodified _VPEDLLPVY_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK;ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-2|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2859497070312 2 522.784233 1043.55391 0.5726 0.00029935 -0.94107 -0.00049198 -0.36847 -0.00019263 522.7839025627202 85.677 0.2905 79.501 79.345 79.635 -6.1757 23 16 2 0 0 0 0.016184 1 56406 56406 67.344 29.193 1 16323000 71440 6701 47768 48809 83123 83123 0.03387805008901523 VPEDLLPVY 9 Unmodified _VPEDLLPVY_ 0 0 0 nc|ENSG00000160209|O00764-3|PDXK;ENST00000398078.7_1_21:45161468-45175941:+|nuORF;ENSG00000160209|ENST00000291565|PDXK;ENST00000468392.5_1_21:45165928-45175941:+|nuORF;nc|ENSG00000160209|O00764-2|PDXK nc|ENSG00000160209|O00764-3|PDXK nc|ENSG00000160209|O00764-3|PDXK MSMS AL20221201_MKP_PDAC_01 4 522.784912109375 2 522.784233 1043.55391 NaN NaN NaN NaN NaN NaN NaN 85.816 1 79.64 79.14 80.14 -6.1757 0 0 0 0.15618 1 56542 56542 36.044 9.7029 1 71441 6701 47768 48809 83124 83124 0.03387805008901523 VPEEGGATHVY 11 Unmodified _VPEEGGATHVY_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.7744750976562 2 579.774928 1157.5353 -0.34085 -0.00019762 -0.1203 -6.9749E-05 -0.46115 -0.00026737 579.774776807979 26.375 0.61443 26.375 26.125 26.74 0 110 31 5 0 0 0 9.0947E-09 3 13558 13456;13558;13661 110.67 80.834 1 91380000 71442 7491 47769 48810 83125;83126;83127 83126 -0.03716356632935458 VPEEGGATHVY 11 Unmodified _VPEEGGATHVY_ 0 0 0 ENSG00000166452|ENST00000309377|AKIP1;nc|ENSG00000166452|Q9NQ31-3|AKIP1;nc|ENSG00000166452|Q9NQ31-2|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 ENSG00000166452|ENST00000309377|AKIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7752075195312 2 579.774928 1157.5353 0.75983 0.00044053 0.15681 9.0917E-05 0.91665 0.00053145 579.7749712581733 30.191 0.56075 26.695 26.431 26.992 -3.497 85 27 4 0 0 0 6.3915E-12 3 17009 16897;17009;17123 129.77 94.84 1 224100000 71443 7491 47769 48810 83128;83129;83130 83129 -0.03716356632935458 VPEEKIRVSAI 11 Unmodified _VPEEKIRVSAI_ 0 0 0 REV__ENSG00000187257|ENST00000334955|RSBN1L REV__ENSG00000187257|ENST00000334955|RSBN1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2453918457031 3 414.246839 1239.71869 0.16867 6.9871E-05 -0.59197 -0.00024522 -0.4233 -0.00017535 414.24702593431584 48.533 0.37336 48.49 48.341 48.714 -0.04369 55 18 4 0 0 0 0.67037 1 26266 26266 7.0371 0.84524 1 15905000 + 71444 23630 47770 48811 83131 83131 0.1084161714873062 VPEFAGLMCY 10 Unmodified _VPEFAGLMCY_ 0 0 0 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 REV__nc|ENSG00000111300|Q14CX7-2|NAA25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.256103515625 2 565.256471 1128.49839 -0.2854 -0.00016132 -3.3047 -0.001868 -3.5901 -0.0020293 565.2548089447346 41.341 0.32649 41.341 41.154 41.48 0 25 15 2 0 0 0 0.33553 1 22267 22267 25.399 2.2509 1 4608800 + 71445 18747 47771 48812 83132 83132 -0.06072067774698553 VPEFQPLG 8 Unmodified _VPEFQPLG_ 0 0 0 REV__nc|ENSG00000196218|P21817-3|RYR1 REV__nc|ENSG00000196218|P21817-3|RYR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7373046875 2 443.737086 885.459619 -0.84317 -0.00037415 0.19009 8.4349E-05 -0.65308 -0.0002898 443.7371999533954 77.981 0.61604 77.499 77.166 77.782 -0.4826 67 40 2 0 0 0 0.61462 2 42723 42723;42844 24.674 1.5255 1 4508200 + 71446 23805 47772 48813 83133;83134 83133 0.012307109774383207 VPEGLWASL 9 Unmodified _VPEGLWASL_ 0 0 0 ENSG00000171236|ENST00000306390|LRG1 ENSG00000171236|ENST00000306390|LRG1 ENSG00000171236|ENST00000306390|LRG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7448120117188 2 486.263468 970.512382 -0.15951 -7.7563E-05 2.1979 0.0010687 2.0384 0.00099118 486.2656953940731 29.403 0.30878 29.403 29.161 29.47 0 35 14 3 0 0 0 0.18521 1 15231 15231 16.942 2.3606 1 836460 71447 8083 47773 48814 83135 83135 0.025946690402406603 VPEGRIYTVY 10 Unmodified _VPEGRIYTVY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.8193969726562 2 598.819138 1195.62372 -0.063596 -3.8082E-05 0.06329 3.79E-05 -0.00030555 -1.8297E-07 598.8191898302615 45.015 0.099133 44.691 44.62 44.719 -0.32425 7 4 2 0 0 0 0.091475 1 24027 24027 55.235 37.088 1 12386000 71448 3181 47774 48815 83136 83136 0.033736836775233314 VPEGRIYTVY 10 Unmodified _VPEGRIYTVY_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.8199462890625 2 598.819138 1195.62372 0.50217 0.00030071 -0.18058 -0.00010813 0.32159 0.00019257 598.8189446543827 50.518 0.50138 44.979 44.725 45.226 -5.5391 75 31 3 0 0 0 0.021497 2 31785 31641;31785 67.081 48.934 1 88028000 71449 3181 47774 48815 83137;83138 83138 0.033736836775233314 VPEGSCHCDW 10 Unmodified _VPEGSCHCDW_ 0 0 0 ENST00000361193.7_2_17:78226526-78226595:+|nuORF ENST00000361193.7_2_17:78226526-78226595:+|nuORF ENST00000361193.7_2_17:78226526-78226595:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1452941894531 3 378.144398 1131.41136 0.40882 0.00015459 1.553 0.00058724 1.9618 0.00074184 378.14477400358913 60.599 0.29317 60.599 60.474 60.767 0 24 12 2 0 0 0 0.70951 1 33776 33776 0.77653 0 1 1020300 71450 12176 47775 48816 83139 83139 -0.1490847399645645 VPEGYFRY 8 Unmodified _VPEGYFRY_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7522583007812 2 515.753267 1029.49198 0.96536 0.00049789 0.43844 0.00022613 1.4038 0.00072401 515.753164999268 41.573 0.45163 36.965 36.722 37.173 -4.6079 71 29 3 0 0 0 0.78849 2 24954 24954;25094 9.3474 0.75416 1 64263000 + 71451 20660 47776 48817 83140;83141 83140 -0.02158501619578601 VPEGYFRY 8 Unmodified _VPEGYFRY_ 0 0 0 REV__ENSG00000143653|ENST00000366510|SCCPDH REV__ENSG00000143653|ENST00000366510|SCCPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7535400390625 2 515.753267 1029.49198 1.2499 0.00064463 0.41715 0.00021515 1.667 0.00085978 515.7529703852056 41.942 0.40904 37.273 37.066 37.475 -4.6693 64 25 3 0 0 0 0.78849 1 25231 25231 9.3474 0.75416 1 59617000 + 71452 20660 47776 48817 83142 83142 -0.02158501619578601 VPEHSPVVY 9 Unmodified _VPEHSPVVY_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.767578125 2 513.766374 1025.5182 -0.27575 -0.00014167 -0.19871 -0.00010209 -0.47447 -0.00024377 513.7663358477373 33.395 0.19067 33.395 33.243 33.434 0 24 9 4 0 0 0 0.023164 1 17452 17452 60.39 38.643 1 11121000 71453 1143 47777 48818 83143 83143 0.0064576755189591495 VPEHSPVVY 9 Unmodified _VPEHSPVVY_ 0 0 0 nc|ENSG00000075151|O43432-4|EIF4G3;nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 nc|ENSG00000075151|O43432-4|EIF4G3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7662353515625 2 513.766374 1025.5182 NaN NaN NaN NaN NaN NaN NaN 33.485 1 33.485 32.985 33.985 0 0 0 0 0.043758 1 17567 17567 60.39 35.716 1 71454 1143 47777 48818 83144 83144 0.0064576755189591495 VPEIFHNLCC 10 Unmodified _VPEIFHNLCC_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2741088867188 2 587.772819 1173.53109 -0.46744 -0.00027475 -0.2435 -0.00014312 -0.71094 -0.00041787 587.7730237708626 19.167 0.17225 19.167 19.06 19.232 0 13 10 2 0 0 0 0.64628 1 9550 9550 8.7454 0 1 564510 + 71455 24353 47778 48819 83145 83145 -0.04873860651855466 VPEIRRDHFE 10 Unmodified _VPEIRRDHFE_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8853454589844 3 433.226438 1296.65748 0.26502 0.00011481 0.69835 0.00030254 0.96337 0.00041736 433.2267443811206 20.237 0.21837 20.247 20.135 20.353 0.010553 23 12 2 0 0 0 0.23993 1 10306 10306 1.7423 0.67081 1 1054000 71456 7318 47779 48820 83146 83146 0.021021051692514447 VPEIRRDHFE 10 Unmodified _VPEIRRDHFE_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 433.226438 1296.65748 0.25083 0.00010866 -0.14566 -6.3103E-05 0.10517 4.5562E-05 433.56049988707616 22.981 0.26379 20.202 20.058 20.322 -2.7784 -0.021524 -0.00032913 NaN 1.7423 22 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3549800 71457 7318 47779 48820 0.021021051692514447 VPEKLSVYK 9 Unmodified _VPEKLSVYK_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;ENST00000475613.6_1_10:79580836-79628876:-|nuORF ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2665405273438 2 531.813325 1061.6121 -0.3289 -0.00017491 -2.0029 -0.0010652 -2.3318 -0.0012401 531.8119708037732 34.635 0.25385 34.635 34.46 34.714 0 26 12 3 0 0 0 0.19496 1 18229 18229 5.7319 0 1 3605900 71458 6097 47780 48821 83147 83147 0.08375486654176711 VPEKRQYLKDS 11 Unmodified _VPEKRQYLKDS_ 0 0 0 REV__nc|ENSG00000089041|Q99572-3|P2RX7 REV__nc|ENSG00000089041|Q99572-3|P2RX7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.91943359375 3 454.917381 1361.73031 1.0934 0.00049739 1.5956 0.00072586 2.689 0.0012233 454.91809766623027 21.866 0.29263 19.131 19.015 19.307 -2.7348 29 16 2 0 0 0 0.68282 1 11713 11713 5.8681 0.82062 1 4040000 + 71459 17825 47781 48822 83148 83148 0.06391814172025079 VPELAETL 8 Unmodified _VPELAETL_ 0 0 0 ENST00000290295.7_1_17:46805581-46805689:-|nuORF ENST00000290295.7_1_17:46805581-46805689:-|nuORF ENST00000290295.7_1_17:46805581-46805689:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2424926757812 2 436.242201 870.469849 NaN NaN NaN NaN NaN NaN NaN 68.675 1 68.675 68.175 69.175 0 0 0 0 0.95607 1 38276 38276 9.3474 0 1 71460 11463 47782 48823 83149 83149 0.029432739120125007 VPELGRRT 8 Unmodified _VPELGRRT_ 0 0 0 REV__nc|ENSG00000107949|Q9P287-4|BCCIP REV__nc|ENSG00000107949|Q9P287-4|BCCIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2725830078125 2 464.272158 926.529764 1.874 0.00087004 0.035648 1.655E-05 1.9096 0.00088659 464.27203562656473 93.338 0.41475 93.361 93.132 93.546 0.022987 24 15 2 0 0 0 0.80992 1 51888 51888 0.69038 0 1 3118500 + 71461 29560 47783 48824 83150 83150 0.06356009365902082 VPELIKDAHL 10 Unmodified _VPELIKDAHL_ 0 0 0 ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC ENSG00000138095|ENST00000260665|LRPPRC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2999267578125 2 567.829506 1133.64446 0.098994 5.6212E-05 0.56933 0.00032328 0.66832 0.00037949 567.8296778480375 56.86 0.21385 56.374 56.265 56.479 -0.48554 16 9 3 0 0 0 0.23566 1 30944 30944 7.2892 1.0834 1 1012000 71462 5017 47784 48825 83151 83151 0.08298274057187882 VPELLIFII 9 Unmodified _VPELLIFII_ 0 0 0 REV__ENSG00000101916|ENST00000218032|TLR8 REV__ENSG00000101916|ENST00000218032|TLR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8390502929688 2 528.838811 1055.66307 -0.61263 -0.00032398 0.60533 0.00032012 -0.0072997 -3.8603E-06 528.8394243315048 103.08 0.068924 103.03 102.98 103.05 -0.047928 6 2 3 0 0 0 0.55775 1 57254 57254 3.9444 1.6417 1 1456700 + 71463 18203 47785 48826 83152 83152 0.13746435699044923 VPELPAPA 8 Unmodified _VPELPAPA_ 0 0 0 REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.2258911132812 2 397.226354 792.438155 0.026298 1.0446E-05 -0.64003 -0.00025424 -0.61374 -0.00024379 397.2260353730365 76.806 0.16707 76.806 76.663 76.83 0 9 6 2 0 0 0 0.71616 1 42709 42709 15.768 4.6538 1 439140 + 71464 27652 47786 48827 83153 83153 0.03363325948691909 VPELPAPA 8 Unmodified _VPELPAPA_ 0 0 0 REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.2259216308594 2 397.226354 792.438155 -0.49701 -0.00019743 -0.22186 -8.8128E-05 -0.71887 -0.00028555 397.2262424428023 77.344 0.39493 76.861 76.603 76.998 -0.4826 31 17 2 0 0 0 0.71616 2 42285 42285;42398 15.768 4.6538 1 1123100 + 71465 27652 47786 48827 83154;83155 83154 0.03363325948691909 VPELPAPA 8 Unmodified _VPELPAPA_ 0 0 0 REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 397.226354 792.438155 0.026298 1.0446E-05 -0.64003 -0.00025424 -0.61374 -0.00024379 397.2260353730365 76.806 0.16707 76.806 76.663 76.83 0 -0.027655 -0.00029871 NaN 15.768 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 439140 + 71466 27652 47786 48827 0.03363325948691909 VPELPAPA 8 Unmodified _VPELPAPA_ 0 0 0 REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 397.226354 792.438155 -0.49701 -0.00019743 -0.22186 -8.8128E-05 -0.71887 -0.00028555 397.2262424428023 77.344 0.39493 76.861 76.603 76.998 -0.4826 0.027655 3.3512E-05 NaN 15.768 31 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1123100 + 71467 27652 47786 48827 0.03363325948691909 VPENTGYTY 9 Unmodified _VPENTGYTY_ 0 0 0 ENST00000413171.6_1_7:872152-892516:+|nuORF;nc|ENSG00000164828|O94901-9|SUN1;ENST00000483996.1_1_7:872152-878624:+|nuORF;nc|ENSG00000164828|O94901-4|SUN1;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1;nc|ENSG00000164828|O94901-3|SUN1;ENST00000340926.7_1_7:872152-889323:+|nuORF;nc|ENSG00000164828|O94901-6|SUN1;ENSG00000164828|ENST00000401592|SUN1 ENST00000413171.6_1_7:872152-892516:+|nuORF ENST00000413171.6_1_7:872152-892516:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.23779296875 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 33.252 1 33.252 32.752 33.752 0 0 0 0 0.41346 1 17422 17422 19.257 0 1 71468 12994 47787 48828 83156 83156 -0.05879119444330172 VPEPLERLYL 10 Unmodified _VPEPLERLYL_ 0 0 0 REV__ENSG00000128805|ENST00000249601|ARHGAP22 REV__ENSG00000128805|ENST00000249601|ARHGAP22 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8226928710938 2 614.850438 1227.68632 0.56019 0.00034443 2.7561 0.0016946 3.3163 0.002039 615.354310403853 67.716 0.18153 67.734 67.647 67.829 0.018028 12 8 2 0 0 0 0.23634 1 37212 37212 6.7232 0 1 1692300 + 71469 19634 47788 48829 83157 83157 0.08158829745730145 VPEPRFSGVL 10 Unmodified _VPEPRFSGVL_ 0 0 0 ENST00000590887.5_1_19:797434-804304:+|nuORF ENST00000590887.5_1_19:797434-804304:+|nuORF ENST00000590887.5_1_19:797434-804304:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.5412292480469 3 367.541475 1099.60259 0.28652 0.00010531 0.34349 0.00012625 0.63001 0.00023155 367.54151416498405 39.835 0.37558 39.84 39.607 39.982 0.0050583 41 17 3 0 0 0 0.60623 1 21179 21179 9.544 1.5986 1 3317200 71470 15691 47789 48830 83158 83158 0.05677718368656315 VPEPRLPLLD 10 Unmodified _VPEPRLPLLD_ 0 0 0 nc|ENSG00000261832|Q13286-4|CLN3;ENST00000566083.6_2_16:28493835-28503080:-|nuORF;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-3|CLN3;ENSG00000188603|ENST00000636147|CLN3;nc|ENSG00000261832|Q13286-5|CLN3;nc|ENSG00000261832|Q13286-6|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;ENST00000565236.1_1_16:28500672-28503080:-|nuORF nc|ENSG00000261832|Q13286-4|CLN3;ENST00000565236.1_1_16:28500672-28503080:-|nuORF nc|ENSG00000261832|Q13286-4|CLN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.5606384277344 3 383.560646 1147.66011 NaN NaN NaN NaN NaN NaN NaN 18.564 1 18.587 18.087 19.087 0.023106 0 0 0 0.9997 1 9316 9316 0.69767 0 1 71471 9674;15401 47790 48831 83159 83159 0.0921856057423156 VPEPTPEPAL 10 Unmodified _VPEPTPEPAL_ 0 0 0 REV__ENSG00000274588|ENST00000611977|DGKK REV__ENSG00000274588|ENST00000611977|DGKK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2797241210938 2 525.279315 1048.54408 NaN NaN NaN NaN NaN NaN NaN 84.423 1 84.423 83.923 84.923 0 0 0 0 0.96627 1 46803 46803 4.3292 1.44 1 + 71472 24644 47791 48832 83160 83160 0.02174617003538515 VPEQDFEM 8 Unmodified _VPEQDFEM_ 0 0 0 nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L;nc|ENSG00000144445|A0AUZ9-4|KANSL1L;nc|ENSG00000144445|A0AUZ9-3|KANSL1L nc|ENSG00000144445|A0AUZ9-2|KANSL1L nc|ENSG00000144445|A0AUZ9-2|KANSL1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3031311035156 2 497.71295 993.411348 0.27108 0.00013492 0.77797 0.0003872 1.049 0.00052212 497.7134604319526 79.138 0.37522 79.138 78.951 79.326 0 27 16 2 0 0 0 8.7369 1 44057 44057 5.2307 2.3415 1 837250 71473 5609 47792 48833 83161 83161 -0.0856215072477653 VPERKLLAR 9 Unmodified _VPERKLLAR_ 0 0 0 ENST00000599699.2_1_19:18544176-18545088:+|nuORF ENST00000599699.2_1_19:18544176-18545088:+|nuORF ENST00000599699.2_1_19:18544176-18545088:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2337036132812 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 91.339 1 91.339 90.839 91.839 0 0 0 0 0.86031 1 50516 50516 0.23584 0 1 71474 15793 47793 48834 83162 83162 0.139651062508392 VPERKLLAR 9 Unmodified _VPERKLLAR_ 0 0 0 ENST00000599699.2_1_19:18544176-18545088:+|nuORF ENST00000599699.2_1_19:18544176-18545088:+|nuORF ENST00000599699.2_1_19:18544176-18545088:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.232666015625 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 91.524 1 91.524 91.024 92.024 0 0 0 0 0.86031 1 50614 50614 0.23584 0 1 71475 15793 47793 48834 83163 83163 0.139651062508392 VPERSLASY 9 Unmodified _VPERSLASY_ 0 0 0 ENSG00000179526|ENST00000398712|SHARPIN;nc|ENSG00000179526|Q9H0F6-2|SHARPIN ENSG00000179526|ENST00000398712|SHARPIN ENSG00000179526|ENST00000398712|SHARPIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2681579589844 2 511.269281 1020.52401 NaN NaN NaN NaN NaN NaN NaN 30.392 1 30.392 29.892 30.892 0 0 0 0 0.61214 1 15788 15788 12.241 2.8575 1 71476 8840 47794 48835 83164 83164 0.0145686606357458 VPESAFATCL 10 Unmodified _VPESAFATCL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.75244140625 2 519.252243 1036.48993 0.89357 0.00046399 1.6384 0.00085075 2.532 0.0013147 519.2536285820271 75.553 1.1849 69.378 68.568 69.752 -6.1757 97 63 2 0 0 0 0.21952 1 48957 48957 10.824 0 1 26369000 71477 4011 47795 48836 83165 83165 -0.026852984197148544 VPESCLLIV 9 Unmodified _VPESCLLIV_ 0 0 0 nc|ENSG00000090020|P19634-2|SLC9A1;ENSG00000090020|ENST00000263980|SLC9A1;CASZ1-SLC9A1|1|fusion nc|ENSG00000090020|P19634-2|SLC9A1 nc|ENSG00000090020|P19634-2|SLC9A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.5425415039062 1 972.543431 971.536154 0.28913 0.00028119 3.7122 0.0036103 4.0013 0.0038915 972.5463088115547 95.279 0.38309 94.911 94.754 95.137 -0.36814 27 17 2 0 0 0 0.49272 1 52118 52118 7.9102 0 1 774620 71478 1545 47796 48837 83166 83166 0.04924766482417908 VPESIEFTK 9 Unmodified _VPESIEFTK_ 0 0 0 REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2794799804688 2 525.279315 1048.54408 0.44306 0.00023273 -0.030735 -1.6144E-05 0.41233 0.00021659 525.2791561865353 69.725 0.42093 69.725 69.489 69.91 0 50 19 3 0 0 0 0.28047 1 38774 38774 18.135 2.2878 1 10168000 + 71479 18569 47797 48838 83167 83167 0.021746170035157775 VPESIEFTK 9 Unmodified _VPESIEFTK_ 0 0 0 REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7810668945312 2 525.279315 1048.54408 0.035094 1.8434E-05 0.42714 0.00022437 0.46224 0.0002428 525.2794065213734 70.265 0.35555 69.786 69.627 69.983 -0.47903 55 17 4 0 0 0 0.28047 1 38377 38377 18.135 2.2878 1 15071000 + 71480 18569 47797 48838 83168 83168 0.021746170035157775 VPESIEFTK 9 Unmodified _VPESIEFTK_ 0 0 0 REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1050.567138671875 1 1049.55135 1048.54408 0.0012303 1.2913E-06 4.0479 0.0042485 4.0491 0.0042498 1050.5624589724182 70.274 0.26022 69.795 69.653 69.914 -0.47903 19 11 2 0 0 0 0.49272 1 38402 38402 7.9102 1.187 1 1858200 + 71481 18569 47797 48838 83169 83169 0.021746170035157775 VPESIEFTK 9 Unmodified _VPESIEFTK_ 0 0 0 REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1049.55135 1048.54408 -0.44794 -0.00047014 1.1477 0.0012046 0.69979 0.00073446 1049.5524709052177 69.721 0.21796 69.721 69.598 69.816 0 -0.037294 -0.00063931 NaN 7.9102 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 921570 + 71482 18569 47797 48838 0.021746170035157775 VPESIEFTK 9 Unmodified _VPESIEFTK_ 0 0 0 REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF REV__ENST00000477289.1_1_10:123718853-123718946:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1049.55135 1048.54408 0.0012303 1.2913E-06 4.0479 0.0042485 4.0491 0.0042498 1050.5624589724182 70.274 0.26022 69.795 69.653 69.914 -0.47903 0.037294 0.0024046 NaN 7.9102 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1858200 + 71483 18569 47797 48838 0.021746170035157775 VPESLDLL 8 Unmodified _VPESLDLL_ 0 0 0 REV__nc|ENSG00000114757|Q8IYB4-4|PEX5L REV__nc|ENSG00000114757|Q8IYB4-4|PEX5L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.2510070800781 2 443.250026 884.485499 NaN NaN NaN NaN NaN NaN NaN 59.822 1 59.822 59.322 60.322 0 0 0 0 0.95201 1 33348 33348 10.183 0 1 + 71484 18931 47798 48839 83170 83170 0.03863560429056179 VPESLLNEY 9 Unmodified _VPESLLNEY_ 0 0 0 REV__ENSG00000180182|ENST00000324817|MED14 REV__ENSG00000180182|ENST00000324817|MED14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2735595703125 2 532.268947 1062.52334 NaN NaN NaN NaN NaN NaN NaN 72.477 1 72.001 71.501 72.501 -0.47609 0 0 0 0.33856 1 39663 39663 23.148 0 1 + 71485 23142 47799 48840 83171 83171 -0.005419733761300449 VPESRVLKY 9 Unmodified _VPESRVLKY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.2124633789062 3 364.213358 1089.61824 -0.49538 -0.00018043 -0.017741 -6.4615E-06 -0.51312 -0.00018689 364.21339532527253 28.882 0.26099 28.882 28.761 29.022 0 32 12 3 0 0 0 0.15471 1 14938 14938 26.021 17.865 1 3763600 71486 9411 47800 48841 83172 83172 0.07702004885709357 VPESRVLKY 9 Unmodified _VPESRVLKY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.2132568359375 3 364.213358 1089.61824 0.57957 0.00021109 -0.091308 -3.3255E-05 0.48826 0.00017783 364.21337680962444 28.851 0.22927 28.788 28.67 28.9 -0.062159 13 9 2 0 0 0 0.32235 1 14896 14896 15.739 6.7624 1 2936300 71487 9411 47800 48841 83173 83173 0.07702004885709357 VPESRVLKY 9 Unmodified _VPESRVLKY_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558539.5_1_15:79170271-79178570:+|nuORF;ENST00000557961.5_1_15:79165359-79178570:+|nuORF;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF;ENST00000558893.5_1_15:79165359-79184661:+|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2142028808594 3 364.213358 1089.61824 1.731 0.00063046 -0.51914 -0.00018908 1.2119 0.00044138 364.2131591035272 32.28 0.38557 28.423 28.249 28.635 -3.8562 49 22 3 0 0 0 0.21643 2 18336 18336;18480 15.739 4.2207 1 31999000 71488 9411 47800 48841 83174;83175 83174 0.07702004885709357 VPESSFPQYL 10 Unmodified _VPESSFPQYL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.790283203125 2 583.790047 1165.56554 0.44299 0.00025861 0.91495 0.00053414 1.3579 0.00079275 583.7904668717489 71.624 0.66251 71.148 70.862 71.525 -0.47609 59 26 3 0 0 0 0.68719 1 39315 39315 4.3292 0.38484 1 8266500 71489 5781 47801 48842 83176 83176 -0.01061997967735806 VPESSFPQYL 10 Unmodified _VPESSFPQYL_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.790771484375 2 583.790047 1165.56554 -0.9583 -0.00055945 0.42857 0.0002502 -0.52973 -0.00030925 583.7899235898105 77.881 0.22331 77.399 77.215 77.439 -0.4826 15 11 2 0 0 0 0.65502 1 42616 42616 7.9102 0 1 2933300 71490 5781 47801 48842 83177 83177 -0.01061997967735806 VPESSGEEDLP 11 Unmodified _VPESSGEEDLP_ 0 0 0 ENST00000375254.7_1_1:19433078-19433150:-|nuORF ENST00000375254.7_1_1:19433078-19433150:-|nuORF ENST00000375254.7_1_1:19433078-19433150:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7653198242188 2 579.761683 1157.50881 1.3194 0.00076497 3.4457 0.0019977 4.7652 0.0027627 579.7637155658823 41.689 0.79549 37.081 36.722 37.517 -4.6079 132 51 3 0 0 0 0.48615 1 25141 25141 17.113 0.1706 1 82286000 71491 12473 47802 48843 83178 83178 -0.06364090314923487 VPESSKHLMD 10 Unmodified _VPESSKHLMD_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7778930664062 2 571.779156 1141.54376 NaN NaN NaN NaN NaN NaN NaN 77.839 1 77.357 76.857 77.857 -0.4826 0 0 0 0.61917 1 42617 42617 20.454 2.3073 1 + 71492 23192 47803 48844 83179 83179 -0.02135125987979336 VPESSLAGHSF 11 Unmodified _VPESSLAGHSF_ 0 0 0 ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3 ENST00000397898.7_1_21:46226868-46228953:-|nuORF ENST00000397898.7_1_21:46226868-46228953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7772216796875 2 565.77747 1129.54039 0.35718 0.00020208 -0.42885 -0.00024263 -0.071668 -4.0548E-05 565.777094247409 39.497 0.35965 39.497 39.302 39.661 0 70 16 5 0 0 0 5.9796E-10 2 21226 21109;21226 118.07 74.169 1 127090000 71493 9299 47804 48845 83180;83181 83181 -0.019200527703333137 VPESSLAGHSF 11 Unmodified _VPESSLAGHSF_ 0 0 0 ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3 ENST00000397898.7_1_21:46226868-46228953:-|nuORF ENST00000397898.7_1_21:46226868-46228953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.778076171875 2 565.77747 1129.54039 0.26949 0.00015247 0.7881 0.00044589 1.0576 0.00059836 565.7778778797154 39.843 0.39015 39.545 39.392 39.782 -0.29716 54 18 4 0 0 0 6.3915E-12 2 21092 20991;21092 129.77 85.707 1 28178000 71494 9299 47804 48845 83182;83183 83183 -0.019200527703333137 VPESSLAGHSF 11 Unmodified _VPESSLAGHSF_ 0 0 0 ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3 ENST00000397898.7_1_21:46226868-46228953:-|nuORF ENST00000397898.7_1_21:46226868-46228953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7794189453125 2 565.77747 1129.54039 0.5771 0.00032651 0.46199 0.00026138 1.0391 0.00058789 565.7776654696014 39.519 0.26597 39.531 39.408 39.674 0.011452 19 12 2 0 0 0 0.011312 1 21041 21041 66.457 41.057 1 1768600 71495 9299 47804 48845 83184 83184 -0.019200527703333137 VPESSLAGHSF 11 Unmodified _VPESSLAGHSF_ 0 0 0 ENST00000397898.7_1_21:46226868-46228953:-|nuORF;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3 ENST00000397898.7_1_21:46226868-46228953:-|nuORF ENST00000397898.7_1_21:46226868-46228953:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.77978515625 2 565.77747 1129.54039 0.72073 0.00040777 -0.02253 -1.2747E-05 0.6982 0.00039503 565.7774369708832 44.836 0.73787 39.984 39.677 40.414 -4.852 163 54 4 0 0 0 1.3386E-08 3 27245 27245;27364;27503 106.94 66.847 1 336810000 71496 9299 47804 48845 83185;83186;83187 83185 -0.019200527703333137 VPESWTQLLF 10 Unmodified _VPESWTQLLF_ 0 0 0 REV__ENST00000342412.10_1_20:61867302-61867566:+|nuORF REV__ENST00000342412.10_1_20:61867302-61867566:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.322265625 2 610.321514 1218.62847 0.56468 0.00034464 0.88429 0.0005397 1.449 0.00088434 610.3223342373477 83.588 0.35459 83.09 82.864 83.219 -0.49751 23 14 2 0 0 0 0.69064 1 45709 45709 3.9444 0.66309 1 644370 + 71497 25719 47805 48846 83188 83188 0.027905678202841955 VPETQELI 8 Unmodified _VPETQELI_ 0 0 0 REV__MER57F_dup142|chr6:29552528-29552933:-|1.7316768612437874|0.0722232426967899|4.58|177.0|1|1|sense REV__MER57F_dup142|chr6:29552528-29552933:-|1.7316768612437874|0.0722232426967899|4.58|177.0|1|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7536315917969 2 464.752933 927.491313 0.7608 0.00035358 -0.32514 -0.00015111 0.43566 0.00020247 464.75272393185753 66.501 0.5079 66.501 66.239 66.747 0 51 22 3 0 0 0 0.78849 1 37211 37211 9.3474 0 1 11573000 + 71498 29463 47806 48847 83189 83189 0.024666589407161155 VPEVSDPQVDL 11 Unmodified _VPEVSDPQVDL_ 0 0 0 nc|ENSG00000249087|Q8NC38|ZNF436-AS1;ENST00000335648.3_1_1:23695790-23696168:+|nuORF nc|ENSG00000249087|Q8NC38|ZNF436-AS1 nc|ENSG00000249087|Q8NC38|ZNF436-AS1 MSMS AL20221201_MKP_PDAC_01 4 599.3024291992188 2 599.303518 1196.59248 NaN NaN NaN NaN NaN NaN NaN 85.61 1 79.435 78.935 79.935 -6.1757 0 0 0 0.37978 1 56395 56395 29.082 1.4528 1 71499 11901 47807 48848 83190 83190 0.002050658527878113 VPEYALPVL 9 Unmodified _VPEYALPVL_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MSMS AL20221201_MKP_PDAC_01 4 500.7902526855469 2 500.789318 999.564084 NaN NaN NaN NaN NaN NaN NaN 92.234 1 86.058 85.558 86.558 -6.1757 0 0 0 0.13852 1 60988 60988 38.151 2.107 1 71500 5637 47808 48849 83191 83191 0.06428412734123867 VPEYSLPVL 9 Unmodified _VPEYSLPVL_ 0 0 0 ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.787353515625 2 508.786776 1015.559 0.24443 0.00012436 -0.61025 -0.00031049 -0.36582 -0.00018612 508.7866520682201 54.269 0.38034 54.202 54.021 54.402 -0.066936 53 18 4 0 0 0 0.068777 1 29562 29562 40.449 12.275 1 15367000 71501 2411 47809 48850 83192 83192 0.05184108871515036 VPEYSLPVL 9 Unmodified _VPEYSLPVL_ 0 0 0 ENSG00000106278|ENST00000393386|PTPRZ1;nc|ENSG00000106278|P23471-2|PTPRZ1;nc|ENSG00000106278|P23471-3|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7867736816406 2 508.786776 1015.559 0.92977 0.00047306 0.52597 0.00026761 1.4557 0.00074066 508.78661918575773 86.979 0.68275 80.803 80.661 81.344 -6.1757 65 37 2 0 0 0 0.068777 1 57285 57285 40.449 12.275 1 24811000 71502 2411 47809 48850 83193 83193 0.05184108871515036 VPFALFESF 9 Unmodified _VPFALFESF_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.774169921875 2 528.773668 1055.53278 NaN NaN NaN NaN NaN NaN NaN 100.62 1 100.58 100.08 101.08 -0.04216 0 0 0 0.17175 1 55898 55898 34.187 0 1 71503 10851 47810 48851 83194 83194 0.007238397000492114 VPFALFESF 9 Unmodified _VPFALFESF_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7744750976562 2 528.773668 1055.53278 0.93478 0.00049429 0.37109 0.00019622 1.3059 0.00069051 528.7733869532782 101.39 0.18241 95.218 95.091 95.274 -6.1757 24 9 3 0 0 0 0.027803 1 68030 68030 56.541 9.6204 1 61596000 71504 10851 47810 48851 83195 83195 0.007238397000492114 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.4730834960938 1 980.472374 979.465098 0.092665 9.0855E-05 0.38429 0.00037679 0.47695 0.00046764 980.4725984602252 75.857 0.53909 75.857 75.547 76.086 0 72 23 4 0 0 0 0.0088975 3 42170 42069;42170;42270 104.8 74.574 1 20085000 71505 5216 47811 48852 83196;83197;83198 83197 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7408142089844 2 490.739825 979.465098 0.18859 9.2547E-05 0.75307 0.00036956 0.94165 0.00046211 490.7400423050256 75.781 0.49284 75.781 75.571 76.064 0 65 21 4 0 0 0 0.013472 3 42086 42086;42184;42284 70.716 49.844 1 13964000 71506 5216 47811 48852 83199;83200;83201 83199 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.4740600585938 1 980.472374 979.465098 0.075372 7.39E-05 0.82076 0.00080473 0.89613 0.00087863 980.4728834327904 76.306 0.45027 75.826 75.594 76.044 -0.47945 58 22 4 0 0 0 0.0048787 2 41781 41679;41781 117.6 83.411 1 11005000 71507 5216 47811 48852 83202;83203 83203 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7409362792969 2 490.739825 979.465098 0.34134 0.00016751 0.68409 0.00033571 1.0254 0.00050322 490.74001300642675 76.369 0.43159 75.89 75.571 76.003 -0.47945 48 18 4 0 0 0 0.026094 2 41782 41683;41782 57.471 34.323 1 4130200 71508 5216 47811 48852 83204;83205 83205 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 980.4779663085938 1 980.472374 979.465098 0.51163 0.00050163 3.4846 0.0034166 3.9963 0.0039182 980.4763068398165 75.777 0.2979 75.824 75.629 75.927 0.047943 20 13 2 0 0 0 0.019303 2 41812 41748;41812 64.236 33.6 1 3090300 71509 5216 47811 48852 83206;83207 83207 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.4751586914062 1 980.472374 979.465098 0.82353 0.00080745 0.14758 0.00014469 0.97111 0.00095215 980.4724851112161 83.995 0.68172 77.82 77.442 78.124 -6.1757 96 36 4 0 0 0 0.0048787 5 55059 55059;55182;55275;55311;55433 117.6 117.6 1 83251000 71510 5216 47811 48852 83208;83209;83210;83211;83212 83208 -0.025456102307657602 VPFDAAVDF 9 Unmodified _VPFDAAVDF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000561220.6_1_15:45434150-45457096:+|nuORF;ENST00000557893.5_1_15:45440187-45444854:+|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7403869628906 2 490.739825 979.465098 0.88542 0.00043451 0.61059 0.00029964 1.496 0.00073415 490.7398715971288 83.971 0.57777 77.795 77.472 78.05 -6.1757 99 30 4 0 0 0 0.016184 3 55210 55088;55210;55330 67.344 44.195 1 117960000 71511 5216 47811 48852 83213;83214;83215 83214 -0.025456102307657602 VPFDGDDIQL 10 Unmodified _VPFDGDDIQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.772705078125 2 559.771854 1117.52915 0.18383 0.00010291 0.37472 0.00020976 0.55855 0.00031266 559.7719964287917 71.78 0.61391 71.78 71.523 72.137 0 59 27 3 0 0 0 0.074936 3 39998 39895;39998;40099 52.268 23.782 1 2982100 71512 10723 47812 48853 83216;83217;83218 83217 -0.02490874864452053 VPFDGDDIQL 10 Unmodified _VPFDGDDIQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1118.535888671875 1 1118.53643 1117.52915 -0.63276 -0.00070776 -0.41081 -0.00045951 -1.0436 -0.0011673 1118.5354678784 71.78 0.32301 71.78 71.621 71.944 0 24 14 2 0 0 0 0.16361 1 40020 40020 38.176 5.8701 1 924220 71513 10723 47812 48853 83219 83219 -0.02490874864452053 VPFDGDDIQL 10 Unmodified _VPFDGDDIQL_ 0 0 0 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MSMS AL20221201_MKP_PDAC_01 4 559.7708740234375 2 559.771854 1117.52915 NaN NaN NaN NaN NaN NaN NaN 80.616 1 74.44 73.94 74.94 -6.1757 0 0 0 0.21708 1 52897 52897 41.84 9.5341 1 71514 10723 47812 48853 83220 83220 -0.02490874864452053 VPFDHAEST 9 Unmodified _VPFDHAEST_ 0 0 0 ENST00000596799.1_1_19:17622481-17623081:+|nuORF;ENSG00000130313|ENST00000252603|PGLS ENST00000596799.1_1_19:17622481-17623081:+|nuORF ENST00000596799.1_1_19:17622481-17623081:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7316284179688 2 501.729989 1001.44543 -0.13157 -6.6013E-05 2.7817 0.0013957 2.6501 0.0013296 501.7311962033988 76.319 0.3569 75.84 75.617 75.974 -0.47945 33 14 3 0 0 0 0.2143 2 41736 41736;41837 21.747 4.8044 1 1933800 71515 4203 47813 48854 83221;83222 83221 -0.055239862415191965 VPFDHAESTY 10 Unmodified _VPFDHAESTY_ 0 0 0 ENST00000596799.1_1_19:17622481-17623081:+|nuORF;ENSG00000130313|ENST00000252603|PGLS ENST00000596799.1_1_19:17622481-17623081:+|nuORF ENST00000596799.1_1_19:17622481-17623081:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2615356445312 2 583.261653 1164.50875 -0.41594 -0.0002426 1.4519 0.00084687 1.036 0.00060426 583.2624693427741 35.082 0.34599 35.082 34.9 35.246 0 46 17 3 0 0 0 0.011118 2 18481 18481;18588 85.642 47.668 1 10658000 71516 4203 47814 48855 83223;83224 83223 -0.06692045524278001 VPFDHAESTY 10 Unmodified _VPFDHAESTY_ 0 0 0 ENST00000596799.1_1_19:17622481-17623081:+|nuORF;ENSG00000130313|ENST00000252603|PGLS ENST00000596799.1_1_19:17622481-17623081:+|nuORF ENST00000596799.1_1_19:17622481-17623081:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.2611083984375 2 583.261653 1164.50875 0.55832 0.00032565 -2.1083 -0.0012297 -1.5499 -0.00090402 583.2604342358097 40.44 0.45302 35.91 35.742 36.195 -4.5294 58 27 3 0 0 0 0.0575 2 24290 24159;24290 56.177 41.339 1 19790000 71517 4203 47814 48855 83225;83226 83226 -0.06692045524278001 VPFDQFIQL 9 Unmodified _VPFDQFIQL_ 0 0 0 nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE;nc|ENSG00000159921|Q9Y223-5|GNE nc|ENSG00000159921|Q9Y223-4|GNE nc|ENSG00000159921|Q9Y223-4|GNE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.7999267578125 2 553.797675 1105.5808 2.2664 0.0012552 1.1532 0.00063863 3.4196 0.0018938 553.7980300729372 95.443 0.28789 95.447 95.265 95.553 0.0041504 23 10 3 0 0 0 0.05447 1 53005 53005 43.858 16.975 1 1639200 71518 6680 47815 48856 83227 83227 0.03222913620106738 VPFEDGLTLQG 11 Unmodified _VPFEDGLTLQG_ 0 0 0 REV__ENST00000552415.1_1_12:107109174-107109339:-|nuORF REV__ENST00000552415.1_1_12:107109174-107109339:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.300537109375 2 588.300778 1174.587 0.094954 5.5861E-05 -0.83759 -0.00049275 -0.74263 -0.00043689 588.3012766354502 39.935 0.22318 39.638 39.512 39.735 -0.29716 20 10 3 0 0 0 0.56638 1 21097 21097 13.042 3.6593 1 1679300 + 71519 28726 47816 48857 83228 83228 0.006693870609524311 VPFEDPSDRFY 11 Unmodified _VPFEDPSDRFY_ 0 0 0 REV__ENSG00000056050|ENST00000393381|HPF1 REV__ENSG00000056050|ENST00000393381|HPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.315185546875 2 686.314417 1370.61428 1.0507 0.00072114 -0.39234 -0.00026927 0.65841 0.00045188 686.3141177796525 42.411 1.1247 37.726 37 38.125 -4.6846 92 72 2 0 0 0 0.53952 3 25489 25156;25303;25489 12.873 7.1408 1 11908000 + 71520 17294 47817 48858 83229;83230;83231 83231 -0.05620129398675999 VPFEDPSDRFY 11 Unmodified _VPFEDPSDRFY_ 0 0 0 REV__ENSG00000056050|ENST00000393381|HPF1 REV__ENSG00000056050|ENST00000393381|HPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 686.314453125 2 686.314417 1370.61428 0.64786 0.00044463 0.045044 3.0915E-05 0.6929 0.00047555 686.3146019438283 44.163 0.47873 39.311 39.039 39.517 -4.852 44 33 2 0 0 0 0.62338 1 26786 26786 10.151 1.995 1 13995000 + 71521 17294 47817 48858 83232 83232 -0.05620129398675999 VPFEERIL 8 Unmodified _VPFEERIL_ 0 0 0 ENSG00000197594|ENST00000647893|ENPP1 ENSG00000197594|ENST00000647893|ENPP1 ENSG00000197594|ENST00000647893|ENPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7848510742188 2 501.784567 1001.55458 0.38086 0.00019111 0.38315 0.00019226 0.76401 0.00038337 501.7847324571717 45.615 0.17698 45.615 45.527 45.704 0 13 8 2 0 0 0 0.76859 1 24908 24908 11.114 1.767 1 4012600 71522 9977 47818 48859 83233 83233 0.053866444486288856 VPFEPGELD 9 Unmodified _VPFEPGELD_ 0 0 0 REV__ENSG00000171456|ENST00000375687|ASXL1 REV__ENSG00000171456|ENST00000375687|ASXL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7408447265625 2 501.742565 1001.47058 NaN NaN NaN NaN NaN NaN NaN 34.527 1 34.527 34.027 35.027 0 0 0 0 0.17247 1 18196 18196 34.102 6.4736 1 + 71523 22562 47819 48860 83234 83234 -0.030099314389417486 VPFEQILSL 9 Unmodified _VPFEQILSL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2991943359375 2 523.30005 1044.58555 0.2585 0.00013527 -2.551 -0.0013349 -2.2925 -0.0011997 523.2986516388016 98.003 0.28764 97.76 97.631 97.919 -0.24277 24 11 3 0 0 0 0.03568 1 53508 53508 52.268 22.044 1 4040000 71524 9323 47820 48861 83235 83235 0.0650379776286627 VPFEQILSL 9 Unmodified _VPFEQILSL_ 0 0 0 ENSG00000185043|ENST00000328649|CIB1;nc|ENSG00000185043|Q99828-2|CIB1 ENSG00000185043|ENST00000328649|CIB1 ENSG00000185043|ENST00000328649|CIB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3014526367188 2 523.30005 1044.58555 3.1472 0.0016469 -0.55805 -0.00029203 2.5892 0.0013549 523.2995981996313 97.656 0.35324 97.638 97.492 97.845 -0.018188 21 12 3 0 0 0 0.05447 1 54291 54291 43.858 9.7559 1 4925000 71525 9323 47820 48861 83236 83236 0.0650379776286627 VPFESPRY 8 Unmodified _VPFESPRY_ 0 0 0 ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA ENSG00000187741|ENST00000389301|FANCA ENSG00000187741|ENST00000389301|FANCA MSMS AL20221201_MKP_PDAC_01 4 497.7529602050781 2 497.753267 993.491981 NaN NaN NaN NaN NaN NaN NaN 44.516 1 39.664 39.164 40.164 -4.852 0 0 0 0.6528 1 27189 27189 30.637 13.694 1 71526 9590 47821 48862 83237 83237 -0.005025016195759235 VPFFDPTGTIY 11 Unmodified _VPFFDPTGTIY_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20221201_MKP_PDAC_01 4 628.8131713867188 2 628.813522 1255.61249 NaN NaN NaN NaN NaN NaN NaN 99.369 1 93.194 92.694 93.694 -6.1757 0 0 0 0.06135 1 66156 66156 85.272 26.593 1 71527 5100 47822 48863 83238 83238 -0.005091384166007629 VPFGNHNSATD 11 Unmodified _VPFGNHNSATD_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7658081054688 2 579.762352 1157.51015 1.3194 0.00076497 2.2923 0.001329 3.6118 0.002094 579.7637155658823 41.689 0.79549 37.081 36.722 37.517 -4.6079 132 51 3 0 0 0 0.18636 1 25010 25010 32.786 3.7041 1 82286000 + 71528 18295 47823 48864 83239 83239 -0.06230411435512906 VPFGPPCF 8 Unmodified _VPFGPPCF_ 0 0 0 REV__ENST00000488106.1_1_22:29663413-29663494:-|nuORF REV__ENST00000488106.1_1_22:29663413-29663494:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.41357421875 1 863.412023 862.404746 1.3765 0.0011885 0.7852 0.00067795 2.1617 0.0018664 863.4125206761978 108.5 0.46523 102.32 102.22 102.68 -6.1757 104 68 2 0 0 0 0.81107 2 72478 72478;72708 0 0 1 3560600 + 71529 24733 47824 48865 83240;83241 83240 -0.03195999094839408 VPFGPRVN 8 Unmodified _VPFGPRVN_ 0 0 0 REV__nc|ENSG00000132466|O75179-7|ANKRD17 REV__nc|ENSG00000132466|O75179-7|ANKRD17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2512817382812 2 443.250695 884.486836 1.2609 0.00055889 -0.25129 -0.00011139 1.0096 0.0004475 443.25062296113805 30.695 0.36531 27.198 26.956 27.321 -3.497 37 17 3 0 0 0 0.67481 1 17265 17265 19.439 1.304 1 45209000 + 71530 19854 47825 48866 83242 83242 0.03997239308478129 VPFGPRVN 8 Unmodified _VPFGPRVN_ 0 0 0 REV__nc|ENSG00000132466|O75179-7|ANKRD17 REV__nc|ENSG00000132466|O75179-7|ANKRD17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 443.250695 884.486836 -0.38216 -0.00016939 -0.39175 -0.00017364 -0.77391 -0.00034304 443.2507303958183 27.084 0.14644 27.084 26.992 27.139 0 -0.057052 -0.00010416 NaN 19.439 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1938000 + 71531 19854 47825 48866 0.03997239308478129 VPFGVESSSF 10 Unmodified _VPFGVESSSF_ 0 0 0 REV__ENST00000581866.1_1_17:73588547-73589005:+|nuORF REV__ENST00000581866.1_1_17:73588547-73589005:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2586059570312 2 528.25584 1054.49713 NaN NaN NaN NaN NaN NaN NaN 78.095 1 77.612 77.112 78.112 -0.4826 0 0 0 0.81521 1 42770 42770 11.64 0.52583 1 + 71532 29071 47826 48867 83243 83243 -0.027942425476112476 VPFHLHINL 9 Unmodified _VPFHLHINL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.8780822753906 3 363.87831 1088.6131 0.53341 0.0001941 -0.0040333 -1.4676E-06 0.52938 0.00019263 363.8783095510455 65.165 0.28357 65.166 64.978 65.261 1.5259E-05 33 13 3 0 0 0 0.009483 1 35665 35665 81.89 63.517 1 18770000 71533 9221 47827 48868 83244 83244 0.0723374581373264 VPFHLHINL 9 Unmodified _VPFHLHINL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8784790039062 3 363.87831 1088.6131 0.76233 0.0002774 0.77189 0.00028087 1.5342 0.00055827 363.8785390916234 93.098 0.29668 86.923 86.77 87.067 -6.1757 35 20 2 0 0 0 0.013041 2 61704 61572;61704 71.922 58.88 1 41045000 71534 9221 47827 48868 83245;83246 83246 0.0723374581373264 VPFHLHINL 9 Unmodified _VPFHLHINL_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.2665405273438 2 545.313826 1088.6131 0.013052 7.1176E-06 0.81842 0.00044629 0.83147 0.00045341 545.3147379764791 93.109 0.29668 86.933 86.77 87.067 -6.1757 26 20 2 0 0 0 0.027499 1 61619 61619 64.236 40.216 1 17097000 71535 9221 47827 48868 83247 83247 0.0723374581373264 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.75048828125 2 517.750724 1033.4869 -0.16077 -8.3239E-05 1.0645 0.00055117 0.90377 0.00046793 517.7510680017206 44.961 0.34164 44.961 44.828 45.17 0 51 17 4 0 0 0 0.0083087 2 24452 24452;24559 97.075 64.769 1 66197000 71536 1901 47828 48869 83248;83249 83248 -0.028508054821941187 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7506713867188 2 517.750724 1033.4869 -0.11853 -6.137E-05 0.19129 9.9038E-05 0.072753 3.7668E-05 517.7508394447913 45.29 0.20752 44.966 44.826 45.033 -0.32425 33 18 2 0 0 0 0.0077963 1 24136 24136 109.63 71.478 1 66584000 71537 1901 47828 48869 83250 83250 -0.028508054821941187 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.7498779296875 2 517.750724 1033.4869 NaN NaN NaN NaN NaN NaN NaN 45.39 1 45.065 44.565 45.565 -0.32425 0 0 0 0.020354 1 24247 24247 77.984 52.585 1 71538 1901 47828 48869 83251 83251 -0.028508054821941187 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7515869140625 2 517.750724 1033.4869 NaN NaN NaN NaN NaN NaN NaN 44.979 1 44.957 44.457 45.457 -0.022064 0 0 0 0.029091 1 24146 24146 67.344 42.67 1 71539 1901 47828 48869 83252 83252 -0.028508054821941187 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.7507934570312 2 517.750724 1033.4869 1.0044 0.00052001 -0.1453 -7.5228E-05 0.85907 0.00044478 517.7504583143768 51.153 0.52352 45.504 45.184 45.707 -5.649 81 31 4 0 0 0 0.0077963 2 32133 32008;32133 109.63 79.404 1 365340000 71540 1901 47828 48869 83253;83254 83254 -0.028508054821941187 VPFHSDLGY 9 Unmodified _VPFHSDLGY_ 0 0 0 nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 nc|ENSG00000100997|Q8N2K0-3|ABHD12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 517.750724 1033.4869 0.00080508 4.1683E-07 0.60426 0.00031285 0.60506 0.00031327 517.7512738806879 44.961 0.11739 44.939 44.838 44.955 -0.022068 -0.016319 5.1121E-05 NaN 109.63 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 6765900 71541 1901 47828 48869 -0.028508054821941187 VPFIYGHKY 9 Unmodified _VPFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2027282714844 3 375.202682 1122.58622 0.62806 0.00023565 -0.13114 -4.9202E-05 0.49693 0.00018645 375.2025583078973 40.654 0.24797 40.35 40.234 40.482 -0.30304 22 11 2 0 0 0 0.12424 1 21488 21488 34.932 26.187 1 7679200 71542 1707 47829 48870 83255 83255 0.029826372025809178 VPFIYGHKY 9 Unmodified _VPFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2029418945312 3 375.202682 1122.58622 0.39078 0.00014662 -0.28944 -0.0001086 0.10134 3.8024E-05 375.20259089613387 40.365 0.44491 40.37 40.169 40.614 0.0050545 76 20 5 0 0 0 0.047196 2 21466 21466;21574 49.554 40.809 1 105460000 71543 1707 47829 48870 83256;83257 83256 0.029826372025809178 VPFIYGHKY 9 Unmodified _VPFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3026123046875 2 562.300384 1122.58622 0.87642 0.00049281 -0.3955 -0.00022239 0.48092 0.00027042 562.3001955628179 40.398 0.34002 40.403 40.149 40.489 0.0050545 38 15 3 0 0 0 0.031062 2 21469 21469;21575 54.774 30.1 1 16423000 71544 1707 47829 48870 83258;83259 83258 0.029826372025809178 VPFIYGHKY 9 Unmodified _VPFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.2030639648438 3 375.202682 1122.58622 1.1235 0.00042152 -0.19568 -7.3419E-05 0.92778 0.0003481 375.2025367437222 44.645 0.72851 39.793 39.504 40.233 -4.852 164 54 4 0 0 0 0.07916 3 27399 27142;27266;27399 41.956 33.21 1 296610000 71545 1707 47829 48870 83260;83261;83262 83262 0.029826372025809178 VPFIYGHKY 9 Unmodified _VPFIYGHKY_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14674592-14674910:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2996826171875 2 562.300384 1122.58622 0.79801 0.00044872 -0.83883 -0.00047168 -0.040819 -2.2953E-05 562.2996884822307 44.672 0.52492 39.82 39.528 40.053 -4.852 99 40 3 0 0 0 0.070838 2 27184 27184;27309 39.957 18.42 1 67177000 71546 1707 47829 48870 83263;83264 83263 0.029826372025809178 VPFKESRAF 9 Unmodified _VPFKESRAF_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.8663635253906 3 360.86607 1079.57638 0.070094 2.5295E-05 1.6111 0.0005814 1.6812 0.0006067 360.86633383711165 31.762 0.3634 31.633 31.454 31.818 -0.12915 30 14 3 0 0 0 0.34134 1 16490 16490 14.957 6.2118 1 3152700 71547 8857;16422;14979 47830 48871 83265 83265 0.03977449197191163 VPFKESRAF 9 Unmodified _VPFKESRAF_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7977905273438 2 540.795466 1079.57638 NaN NaN NaN NaN NaN NaN NaN 31.787 1 31.658 31.158 32.158 -0.12915 0 0 0 0.65645 1 16536 16536 10.8 1.4521 1 71548 8857;16422;14979 47830 48871 83266 83266 0.03977449197191163 VPFKESRAF 9 Unmodified _VPFKESRAF_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8667602539062 3 360.86607 1079.57638 1.4588 0.00052644 0.69052 0.00024918 2.1493 0.00077562 360.8662997322131 35.545 0.35406 31.352 31.201 31.555 -4.1928 36 21 2 0 0 0 0.028475 1 20602 20602 43.982 25.609 1 12628000 71549 8857;16422;14979 47830 48871 83267 83267 0.03977449197191163 VPFKLKLHGI 10 Unmodified _VPFKLKLHGI_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5822448730469 3 384.581493 1150.72265 0.081161 3.1213E-05 1.3992 0.00053812 1.4804 0.00056933 384.58195863746266 33.963 0.43624 33.992 33.769 34.205 0.028934 60 19 4 0 0 0 0.69377 2 17811 17811;17906 1.7423 0.78 1 30352000 71550 8442 47831 48872 83268;83269 83268 0.15331751433086538 VPFKLKLHGI 10 Unmodified _VPFKLKLHGI_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5818176269531 3 384.581493 1150.72265 -0.17028 -6.5486E-05 1.3096 0.00050366 1.1394 0.00043817 384.5818968975457 35.822 0.38844 35.847 35.602 35.99 0.024967 37 18 4 0 0 0 0.71123 1 18869 18869 0.69767 0.46182 1 7820900 71551 8442 47831 48872 83270 83270 0.15331751433086538 VPFKLKLHGI 10 Unmodified _VPFKLKLHGI_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.581787109375 3 384.581493 1150.72265 -0.26129 -0.00010049 1.5384 0.00059163 1.2771 0.00049114 384.5819713491949 36.314 0.43509 36.339 36.187 36.622 0.024971 57 19 4 0 0 0 0.6966 1 19332 19332 1.5923 0.52082 1 12942000 71552 8442 47831 48872 83271 83271 0.15331751433086538 VPFKLKLHGI 10 Unmodified _VPFKLKLHGI_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 384.581493 1150.72265 0.37679 0.00014491 0.66301 0.00025498 1.0398 0.00039989 384.58168095508006 36.301 0.28086 36.301 36.186 36.467 0 -0.069317 -0.00068715 NaN 1.5923 17 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2632500 71553 8442 47831 48872 0.15331751433086538 VPFKLKLHGI 10 Unmodified _VPFKLKLHGI_ 0 0 0 nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY nc|ENSG00000174611|Q8NBH2-3|KY nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 384.581493 1150.72265 1.4874 0.00057204 1.2266 0.00047171 2.714 0.0010438 384.5818927327429 41.08 0.73134 36.472 35.892 36.624 -4.6079 0.10104 -3.6966E-05 NaN 1.5923 113 45 3 NaN NaN NaN NaN 0 NaN NaN 0 72840000 71554 8442 47831 48872 0.15331751433086538 VPFKQGMEY 9 Oxidation (M) _VPFKQGM(Oxidation (M))EY_ VPFKQGM(1)EY VPFKQGM(52)EY 0 0 1 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7661743164062 2 557.765517 1113.51648 1.298 0.000724 -0.013911 -7.7588E-06 1.2841 0.00071624 557.76548358382 34.197 0.55465 30.212 29.805 30.359 -3.9853 45 30 2 0 0 0 0.036857 1 19630 19630 51.63 31.176 1 8606900 71555 7128 47832 48873 83272 83272 1228 -0.03573609528348243 VPFKQGMEY 9 Oxidation (M) _VPFKQGM(Oxidation (M))EY_ 0 0 1 ENSG00000164062|ENST00000296456|APEH;ENST00000480772.1_1_3:49720035-49720580:+|nuORF ENSG00000164062|ENST00000296456|APEH ENSG00000164062|ENST00000296456|APEH MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 557.765517 1113.51648 0.84381 0.00047065 1.2541 0.00069948 2.0979 0.0011701 557.7659975865561 30.197 0.22769 30.116 30.027 30.255 -0.080429 -0.016661 0.0011939 NaN 51.63 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1044600 71556 7128 47832 48873 1228 -0.03573609528348243 VPFLAFKHL 9 Unmodified _VPFLAFKHL_ 0 0 0 ENSG00000174482|ENST00000698399|LINGO2 ENSG00000174482|ENST00000698399|LINGO2 ENSG00000174482|ENST00000698399|LINGO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.2178649902344 3 357.883172 1070.62769 1.1547 0.00041324 -0.50342 -0.00018017 0.65124 0.00023307 358.2173540064477 17.562 0.24302 14.975 14.901 15.144 -2.5866 90 45 3 0 0 0 0.49272 1 9253 9253 4.897 0 1 8952700 71557 8424 47833 48874 83273 83273 0.09519817961904664 VPFLDHRFSSY 11 Unmodified _VPFLDHRFSSY_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.5628356933594 3 456.562938 1366.66699 0.12187 5.5641E-05 0.015168 6.9252E-06 0.13704 6.2567E-05 456.56289306644646 55.618 0.34814 55.55 55.298 55.646 -0.068741 33 17 2 0 0 0 0.62603 1 30278 30278 10.016 5.3003 1 7507300 71558 1033 47834 48875 83274 83274 -0.0016812654519071657 VPFLHAQRY 9 Unmodified _VPFLHAQRY_ 0 0 0 nc|ENSG00000124155|Q969N2-4|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT nc|ENSG00000124155|Q969N2-4|PIGT nc|ENSG00000124155|Q969N2-4|PIGT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5410461425781 3 377.541697 1129.60326 0.084016 3.172E-05 -0.61153 -0.00023088 -0.52752 -0.00019916 377.54148162639126 38.388 0.20835 38.405 38.314 38.522 0.01704 14 9 2 0 0 0 0.37578 1 20441 20441 13.615 8.2122 1 1223700 71559 3750 47835 48876 83275 83275 0.043645578083669534 VPFLLWWY 8 Unmodified _VPFLLWWY_ 0 0 0 REV__ENSG00000132874|ENST00000255226|SLC14A2 REV__ENSG00000132874|ENST00000255226|SLC14A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.3034057617188 2 562.302396 1122.59024 0.81952 0.00046082 0.31427 0.00017671 1.1338 0.00063753 562.3026171716812 40.554 0.24886 40.251 40.148 40.397 -0.30304 21 11 2 0 0 0 0.76859 1 21468 21468 11.114 1.767 1 2374700 + 71560 19888 47836 48877 83276 83276 0.0338472669627663 VPFLPVNPEY 10 Unmodified _VPFLPVNPEY_ 0 0 0 ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1;ENST00000473217.5_1_17:27902646-27905994:-|nuORF;ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2 ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000139436|Q14161-9|GIT2 ENSG00000108262|ENST00000225394|GIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.81005859375 2 587.810782 1173.60701 0.4825 0.00028362 -0.9909 -0.00058246 -0.5084 -0.00029885 587.8098132233341 82.967 0.37921 82.469 82.263 82.642 -0.49751 35 15 3 0 0 0 0.17714 2 45381 45381;45481 53.576 30.839 1 2772800 71561 2555;5156 47837 48878 83277;83278 83277 0.027151827915531612 VPFMKKTFY 9 Unmodified _VPFMKKTFY_ 0 0 0 nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 nc|ENSG00000104635|Q15043-2|SLC39A14 MSMS AL20221201_MKP_PDAC_01 4 387.5444641113281 3 387.543939 1159.60999 NaN NaN NaN NaN NaN NaN NaN 50.543 1 45.004 44.504 45.504 -5.5391 0 0 0 0.52861 1 31726 31726 14.957 1.3423 1 71562 2219 47838 48879 83279 83279 0.03656734644732751 VPFMLPLP 8 Unmodified _VPFMLPLP_ 0 0 0 REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF REV__ENST00000313234.9_1_12:52565184-52565452:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2643737792969 2 457.264425 912.514297 0.40107 0.0001834 0.40696 0.00018609 0.80803 0.00036948 457.2645024804598 83.706 0.57307 83.208 82.914 83.487 -0.49751 69 23 4 0 0 0 0.81107 2 45819 45819;45925 0 0 1 18590000 + 71563 25436 47839 48880 83280;83281 83280 0.05454006524507804 VPFNETTDLSF 11 Unmodified _VPFNETTDLSF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3030395507812 2 635.303518 1268.59248 0.38374 0.00024379 1.4594 0.00092718 1.8432 0.001171 635.3048254030092 73.772 0.57213 73.296 73.066 73.638 -0.47588 52 26 3 0 0 0 0.46131 1 40458 40458 18.373 5.3306 1 2759000 71564 601 47840 48881 83282 83282 -0.03106934147240281 VPFNETTDLSF 11 Unmodified _VPFNETTDLSF_ 0 0 0 ENSG00000033178|ENST00000322244|UBA6;nc|ENSG00000033178|A0AVT1-4|UBA6;ENST00000429659.7_1_4:68529542-68566852:-|nuORF;nc|ENSG00000033178|A0AVT1-3|UBA6 ENSG00000033178|ENST00000322244|UBA6 ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3037109375 2 635.303518 1268.59248 0.89539 0.00056885 -0.1339 -8.5065E-05 0.7615 0.00048378 635.3035553021288 81.649 0.53532 75.473 75.195 75.73 -6.1757 75 29 3 0 0 0 9.2349E-09 2 53623 53488;53623 110.55 64.853 1 25228000 71565 601 47840 48881 83283;83284 83284 -0.03106934147240281 VPFNIPLEF 9 Unmodified _VPFNIPLEF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2944946289062 2 538.294768 1074.57498 0.21046 0.00011329 -0.95891 -0.00051617 -0.74845 -0.00040289 538.2941502680865 100.42 0.15704 100.29 100.19 100.35 -0.13293 11 5 3 0 0 0 0.14602 1 54822 54822 28.487 15.955 1 3494300 71566 1980 47841 48882 83285 83285 0.04067815108442119 VPFNIPLEF 9 Unmodified _VPFNIPLEF_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2993774414062 2 538.294768 1074.57498 1.0768 0.00057965 1.8769 0.0010103 2.9537 0.0015899 538.2946082525746 101.15 0.23246 94.976 94.831 95.064 -6.1757 51 13 5 0 0 0 0.026094 1 67768 67768 57.471 25.166 1 488480000 71567 1980 47841 48882 83286 83286 0.04067815108442119 VPFPLTLRF 9 Unmodified _VPFPLTLRF_ 0 0 0 ENSG00000125037|ENST00000245046|EMC3;nc|ENSG00000125037|Q9P0I2-2|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF ENSG00000125037|ENST00000245046|EMC3 ENSG00000125037|ENST00000245046|EMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3269653320312 2 545.326402 1088.63825 1.1849 0.00064615 -0.40042 -0.00021836 0.78447 0.00042779 545.3260917534511 91.755 0.38673 91.791 91.586 91.972 0.036499 37 13 4 0 0 0 0.0086722 2 50997 50997;51097 88.954 64.28 1 28362000 71568 3827 47842 48883 83287;83288 83287 0.09747800616310087 VPFPPSGD 8 Unmodified _VPFPPSGD_ 0 0 0 REV__ENSG00000172869|ENST00000539542|DMXL1 REV__ENSG00000172869|ENST00000539542|DMXL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 815.3947143554688 1 815.393396 814.386119 1.1727 0.00095622 -0.019637 -1.6012E-05 1.1531 0.00094021 815.3933423777761 83.962 0.46533 77.786 77.548 78.013 -6.1757 37 24 2 0 0 0 0.5284 1 55235 55235 32.117 0 1 12347000 + 71569 22681 47843 48884 83289 83289 -0.028498374650439473 VPFPPSSV 8 Unmodified _VPFPPSSV_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 829.4456787109375 1 829.445431 828.438155 -0.23203 -0.00019245 0.48629 0.00040335 0.25427 0.0002109 829.4458560798013 65.312 0.77406 64.828 64.448 65.222 -0.48428 64 35 2 0 0 0 0.57408 1 35605 35605 28.173 1.832 1 3078300 + 71570 29704 47844 48885 83290 83290 0.017073259487233372 VPFPPSSV 8 Unmodified _VPFPPSSV_ 0 0 0 REV__nc|ENSG00000151651|P78325-2|ADAM8 REV__nc|ENSG00000151651|P78325-2|ADAM8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 829.44677734375 1 829.445431 828.438155 1.1322 0.00093913 -0.076901 -6.3785E-05 1.0553 0.00087534 829.4451632017967 71.954 0.68021 65.778 65.443 66.123 -6.1757 72 36 3 0 0 0 0.50586 1 47156 47156 34.187 6.0141 1 57870000 + 71571 29704 47844 48885 83291 83291 0.017073259487233372 VPFPRLHFF 9 Unmodified _VPFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.218505859375 3 387.218555 1158.63383 0.16139 6.2495E-05 0.05332 2.0647E-05 0.21471 8.3141E-05 387.2185001926482 75.166 0.70663 75.212 74.92 75.627 0.045967 96 33 4 0 0 0 0.15471 3 41437 41338;41437;41545 27.629 19.473 1 55881000 71572 9643;9783;4920;10820;8557;8299 47845 48886 83292;83293;83294 83293 0.06086336193425268 VPFPRLHFF 9 Unmodified _VPFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.324951171875 2 580.324194 1158.63383 0.64331 0.00037333 0.15396 8.9349E-05 0.79727 0.00046268 580.3243746489575 75.097 0.42427 75.143 74.984 75.409 0.045967 33 20 2 0 0 0 0.0090524 2 41419 41419;41530 85.357 68.414 1 3925800 71573 9643;9783;4920;10820;8557;8299 47845 48886 83295;83296 83295 0.06086336193425268 VPFPRLHFF 9 Unmodified _VPFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2196350097656 3 387.218555 1158.63383 1.5887 0.00061517 -0.23902 -9.2552E-05 1.3497 0.00052261 387.21843561809146 97.88 0.19159 91.704 91.64 91.831 -6.1757 15 11 2 0 0 0 0.2324 1 64891 64891 20.415 7.5419 1 9308200 71574 9643;9783;4920;10820;8557;8299 47845 48886 83297 83297 0.06086336193425268 VPFPRLHFF 9 Unmodified _VPFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2187805175781 3 387.218555 1158.63383 1.4138 0.00054747 0.044556 1.7253E-05 1.4584 0.00056472 387.21848920363925 98.485 0.37044 92.309 92.057 92.427 -6.1757 72 25 4 0 0 0 0.10247 2 65244 65244;65381 32.786 32.786 1 279430000 71575 9643;9783;4920;10820;8557;8299 47845 48886 83298;83299 83298 0.06086336193425268 VPFPRLHFF 9 Unmodified _VPFPRLHFF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000176014|ENST00000317702|TUBB6;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENST00000417736.2_1_18:12308439-12326126:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3043823242188 2 580.324194 1158.63383 1.0057 0.00058362 1.3191 0.00076553 2.3248 0.0013491 580.3249737587508 98.492 0.16819 92.316 92.221 92.389 -6.1757 28 11 3 0 0 0 0.0082353 2 65289 65289;65297 97.075 73.926 1 87429000 71576 9643;9783;4920;10820;8557;8299 47845 48886 83300;83301 83300 0.06086336193425268 VPFQLLARY 9 Unmodified _VPFQLLARY_ 0 0 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.82177734375 2 553.821484 1105.62842 0.76268 0.00042239 0.50338 0.00027878 1.2661 0.00070117 553.8216078475067 70.332 0.56828 70.368 70.173 70.741 0.035515 51 26 3 0 0 0 0.0095811 1 38689 38689 81.613 58.465 1 6987100 71577 2597 47846 48887 83302 83302 0.07982612610953765 VPFQLLARY 9 Unmodified _VPFQLLARY_ 0 0 0 ENST00000586720.5_1_17:76967660-76975958:-|nuORF;ENST00000587251.5_1_17:76967660-76972124:-|nuORF;ENSG00000108679|ENST00000262776|LGALS3BP ENST00000586720.5_1_17:76967660-76975958:-|nuORF ENST00000586720.5_1_17:76967660-76975958:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.7250366210938 2 553.821484 1105.62842 1.033 0.00057207 1.5825 0.00087643 2.6155 0.0014485 553.8225182876166 83.604 0.60586 77.428 77.192 77.798 -6.1757 41 31 2 0 0 0 0.047927 1 55053 55053 37.974 16.227 1 5629800 71578 2597 47846 48887 83303 83303 0.07982612610953765 VPFRCKVVK 9 Unmodified _VPFRCKVVK_ 0 0 0 REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF REV__ENST00000469535.5_1_1:207934598-207940656:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.326904296875 2 538.325879 1074.63721 0.25591 0.00013776 0.80159 0.00043151 1.0575 0.00056928 538.326032924103 92.328 0.41196 92.328 92.129 92.541 0 72 30 3 0 0 0 0.58466 1 50998 50998 2.3027 0 1 1659400 + 71579 19098 47847 48888 83304 83304 0.10287262975771228 VPFRGDYLL 9 Unmodified _VPFRGDYLL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;nc|ENSG00000087299|Q9H9P8-2|L2HGDH;ENSG00000087299|ENST00000267436|L2HGDH ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.53466796875 3 360.53432 1078.58113 1.4888 0.00053675 0.18504 6.6715E-05 1.6738 0.00060346 360.53433147647735 39.077 0.41261 34.626 34.399 34.811 -4.4509 80 26 4 0 0 0 0.32871 1 23048 23048 10.8 0 1 91366000 71580 35 47848 48889 83305 83305 0.04498333339961391 VPFRNSKLTY 10 Unmodified _VPFRNSKLTY_ 0 0 0 nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8961791992188 3 408.896029 1223.66626 -0.081518 -3.3332E-05 0.38324 0.0001567 0.30172 0.00012337 408.89604578592775 34.177 0.20551 34.206 34.103 34.308 0.028934 31 9 4 0 0 0 0.46514 1 18004 18004 11.518 5.7344 1 10602000 71581 5277 47849 48890 83306 83306 0.06337078805768215 VPFRNSKLTY 10 Unmodified _VPFRNSKLTY_ 0 0 0 nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 nc|ENSG00000140859|Q9BVG8-5|KIFC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2317199707031 3 408.896029 1223.66626 0.45805 0.0001873 2.9145 0.0011917 3.3726 0.001379 408.8973114886825 38.544 0.27195 34.175 34.092 34.364 -4.3689 29 17 2 0 0 0 0.56348 1 22798 22798 7.9454 3.5392 1 25454000 71582 5277 47849 48890 83307 83307 0.06337078805768215 VPFRRPSTF 9 Unmodified _VPFRRPSTF_ 0 0 0 nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF nc|ENSG00000263001|P78347-2|GTF2I nc|ENSG00000263001|P78347-2|GTF2I MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5428771972656 3 369.541697 1105.60326 1.1785 0.00043551 0.41624 0.00015382 1.5948 0.00058933 369.5418859480512 38.393 0.26453 34.024 33.9 34.164 -4.3689 30 16 2 0 0 0 0.43515 1 22692 22692 10.8 1.8233 1 8750900 71583 10851 47850 48891 83308 83308 0.054685578083763176 VPFRVAAY 8 Unmodified _VPFRVAAY_ 0 0 0 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.761474609375 2 461.760895 921.507237 0.82366 0.00038034 0.6386 0.00029488 1.4623 0.00067522 461.7611194038369 47.451 0.26013 47.412 47.258 47.518 -0.038647 24 11 3 0 0 0 0.31612 1 25577 25577 53.576 19.388 1 3089500 71584 5109 47851 48892 83309 83309 0.04334409968271302 VPFRVAAY 8 Unmodified _VPFRVAAY_ 0 0 0 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 ENSG00000138801|ENST00000265174|PAPSS1 MSMS AL20221201_MKP_PDAC_01 4 461.7617797851562 2 461.760895 921.507237 NaN NaN NaN NaN NaN NaN NaN 53.094 1 47.289 46.789 47.789 -5.8042 0 0 0 0.33381 1 33526 33526 60.39 35.716 1 71585 5109 47851 48892 83310 83310 0.04334409968271302 VPFSQPVCF 9 Carbamidomethyl (C) _VPFSQPVC(Carbamidomethyl (C))F_ VPFSQPVC(1)F VPFSQPVC(64)F 0 1 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000577691.5_1_17:18387201-18397610:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7632446289062 2 540.762778 1079.511 -0.032163 -1.7393E-05 0.96283 0.00052066 0.93067 0.00050327 540.7627309400758 70.304 0.33001 69.825 69.641 69.971 -0.47903 48 15 5 0 0 0 0.019303 1 38424 38424 64.236 35.749 1 3720300 71586 7822 47852 48893 83311 83311 761 -0.025572883201675722 VPFSQPVCF 9 Carbamidomethyl (C) _VPFSQPVC(Carbamidomethyl (C))F_ VPFSQPVC(1)F VPFSQPVC(64)F 0 1 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000577691.5_1_17:18387201-18397610:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.7630615234375 2 540.762778 1079.511 0.25834 0.0001397 -0.15792 -8.54E-05 0.10041 5.43E-05 540.7627877948358 69.842 0.43948 69.873 69.629 70.068 0.030914 62 22 4 0 0 0 0.019303 2 38345 38345;38461 64.236 43.365 1 17905000 71587 7822 47852 48893 83312;83313 83312 761 -0.025572883201675722 VPFSQPVCF 9 Carbamidomethyl (C) _VPFSQPVC(Carbamidomethyl (C))F_ VPFSQPVC(1)F VPFSQPVC(85)F 0 1 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000577691.5_1_17:18387201-18397610:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7633666992188 2 540.762778 1079.511 0.45018 0.00024344 -0.33703 -0.00018226 0.11315 6.1185E-05 540.7626889843431 77.477 0.91506 71.301 70.879 71.794 -6.1757 165 52 4 0 0 0 0.0090851 4 50879 50509;50632;50762;50879 85.357 55.132 1 189970000 71588 7822 47852 48893 83314;83315;83316;83317 83317 761 -0.025572883201675722 VPFSQPVCF 9 Unmodified _VPFSQPVCF_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000577691.5_1_17:18387201-18397610:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2525024414062 2 512.252046 1022.48954 0.78477 0.000402 -0.21219 -0.00010869 0.57259 0.00029331 512.2518929980376 80.344 0.41824 79.855 79.665 80.083 -0.48932 40 16 4 0 0 0 0.39863 1 44007 44007 12.532 4.6214 1 533970 71589 7822 47852 48894 83318 83318 -0.020806733488825557 VPFSSCELFL 10 Unmodified _VPFSSCELFL_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7533569335938 2 571.283543 1140.55253 0.31373 0.00017923 -2.4179 -0.0013813 -2.1042 -0.0012021 571.2822233445462 65.484 0.22986 64.999 64.918 65.148 -0.48428 13 10 2 0 0 0 0.22507 1 35802 35802 11.64 8.0438 1 920560 + 71590 17712 47853 48895 83319 83319 -0.012121523515133958 VPFSSCLEAY 10 Carbamidomethyl (C) _VPFSSC(Carbamidomethyl (C))LEAY_ VPFSSC(1)LEAY VPFSSC(48)LEAY 0 1 0 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.767822265625 2 586.768257 1171.52196 0.47749 0.00028018 -0.64819 -0.00038034 -0.1707 -0.00010016 586.7682088284297 64.641 0.42867 64.155 63.887 64.316 -0.48512 47 19 4 0 0 0 0.092434 2 35200 35200;35308 48.346 33.508 1 7518500 71591 2810 47854 48896 83320;83321 83320 291 -0.056939307365382774 VPFSSCLEAY 10 Carbamidomethyl (C) _VPFSSC(Carbamidomethyl (C))LEAY_ VPFSSC(1)LEAY VPFSSC(82)LEAY 0 1 0 ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5;ENST00000541969.1_1_12:6969646-6972391:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF ENST00000537267.5_1_12:6966716-6975238:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7685546875 2 586.768257 1171.52196 1.0805 0.000634 0.44009 0.00025823 1.5206 0.00089223 586.7683808464514 71.331 0.40233 65.155 64.965 65.367 -6.1757 40 19 3 0 0 0 0.013474 1 46597 46597 81.613 43.639 1 43705000 71592 2810 47854 48896 83322 83322 291 -0.056939307365382774 VPFSVPKIPL 10 Unmodified _VPFSVPKIPL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8426513671875 2 548.841885 1095.66922 0.88536 0.00048592 0.47322 0.00025972 1.3586 0.00074564 548.8421693109558 82.816 0.25311 82.878 82.741 82.994 0.062004 21 9 3 0 0 0 0.053349 1 45829 45829 66.457 37.375 1 3567400 71593 972 47855 48897 83323 83323 0.12520953930561518 VPFSVPKIPL 10 Unmodified _VPFSVPKIPL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.8444213867188 2 548.841885 1095.66922 1.1045 0.00060617 1.2605 0.0006918 2.3649 0.001298 548.8426187333524 97.006 0.23807 90.831 90.708 90.946 -6.1757 23 13 2 0 0 0 0.095172 1 64295 64295 56.177 21.775 1 14939000 71594 972 47855 48897 83324 83324 0.12520953930561518 VPFSWKCI 8 Unmodified _VPFSWKCI_ 0 0 0 REV__ENST00000575534.1_1_17:4578567-4578798:-|nuORF REV__ENST00000575534.1_1_17:4578567-4578798:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.5122680664062 1 979.506986 978.499709 0.12384 0.0001213 1.9533 0.0019133 2.0772 0.0020346 979.5089236064488 68.934 0.31818 68.454 68.309 68.627 -0.48071 21 13 2 0 0 0 0.71616 1 37731 37731 15.768 7.1749 1 1423000 + 71595 28998 47856 48898 83325 83325 0.009599343763397883 VPFTARTRL 9 Unmodified _VPFTARTRL_ 0 0 0 ENST00000382788.7_1_4:3433589-3433751:+|nuORF ENST00000382788.7_1_4:3433589-3433751:+|nuORF ENST00000382788.7_1_4:3433589-3433751:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.2108154296875 3 354.213581 1059.61891 0.10577 3.7465E-05 -0.1667 -5.9048E-05 -0.060932 -2.1583E-05 354.2135177196823 38.933 0.56568 38.944 38.757 39.323 0.011452 77 26 4 0 0 0 0.51218 1 20893 20893 7.1017 1.3183 1 77071000 71596 12634 47857 48899 83326 83326 0.091488443254093 VPFTEEQLF 9 Unmodified _VPFTEEQLF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7803955078125 2 555.279315 1108.54408 0.47061 0.00026132 -1.3545 -0.0007521 -0.88384 -0.00049078 555.2782169869485 77.561 0.46642 77.561 77.433 77.9 0 79 34 3 0 0 0 0.038285 2 43092 43092;43199 50.855 28.487 1 4055500 71597 6399 47858 48900 83327;83328 83327 -0.005853829964962642 VPFTEEQLF 9 Unmodified _VPFTEEQLF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2775268554688 2 555.279315 1108.54408 NaN NaN NaN NaN NaN NaN NaN 78.013 1 77.53 77.03 78.03 -0.4826 0 0 0 0.36554 1 42724 42724 21.747 1.3321 1 71598 6399 47858 48900 83329 83329 -0.005853829964962642 VPFTEEQLF 9 Unmodified _VPFTEEQLF_ 0 0 0 nc|ENSG00000155636|Q8IUH3-2|RBM45;ENST00000424000.6_1_2:178977216-178988379:+|nuORF;ENSG00000155636|ENST00000286070|RBM45;nc|ENSG00000155636|Q8IUH3|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 nc|ENSG00000155636|Q8IUH3-2|RBM45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2579956054688 2 555.279315 1108.54408 0.59517 0.00033049 1.5445 0.00085761 2.1396 0.0011881 555.2799124377186 85.75 0.38145 79.574 79.327 79.709 -6.1757 29 21 2 0 0 0 0.019303 1 56584 56584 64.236 18.215 1 14932000 71599 6399 47858 48900 83330 83330 -0.005853829964962642 VPFTEQIIQTF 11 Unmodified _VPFTEQIIQTF_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.8533325195312 2 661.853178 1321.6918 0.43959 0.00029094 0.0050099 3.3158E-06 0.4446 0.00029426 661.8530729862503 92.397 0.36435 91.917 91.721 92.085 -0.48092 46 16 4 0 0 0 0.60536 2 50536 50443;50536 18.373 12.167 1 2129100 71600 7843 47859 48901 83331;83332 83332 0.043825085375146955 VPFTEQIIQTF 11 Unmodified _VPFTEQIIQTF_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.8535766601562 2 661.853178 1321.6918 1.552 0.0010272 -0.20509 -0.00013574 1.347 0.00089149 661.8531134582007 91.879 0.38657 91.909 91.691 92.078 0.03019 33 13 3 0 0 0 0.0043436 2 51065 51065;51178 93.166 72.751 1 9637000 71601 7843 47859 48901 83333;83334 83333 0.043825085375146955 VPFTEQIIQTF 11 Unmodified _VPFTEQIIQTF_ 0 0 0 nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 nc|ENSG00000169180|Q96QU8-2|XPO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.853271484375 2 661.853178 1321.6918 0.62794 0.0004156 0.37257 0.00024659 1.0005 0.00066219 661.8533909662282 99.49 0.1525 93.314 93.228 93.38 -6.1757 26 9 3 0 0 0 5.8765E-11 1 66232 66232 149.91 124.92 1 149980000 71602 7843 47859 48901 83335 83335 0.043825085375146955 VPFTESAVSKL 11 Unmodified _VPFTESAVSKL_ 0 0 0 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 ENSG00000010818|ENST00000367603|HIVEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.5525512695312 3 393.22029 1176.63904 0.64342 0.000253 0.13138 5.166E-05 0.77479 0.00030466 393.5551775829732 47.656 0.36753 47.303 47.085 47.452 -0.35261 31 17 3 0 0 0 0.67922 1 25519 25519 2.8433 0 1 7320400 71603 428 47860 48902 83336 83336 0.0577855047470166 VPFTFGLVD 9 Unmodified _VPFTFGLVD_ 0 0 0 ENSG00000136319|ENST00000258821|TTC5 ENSG00000136319|ENST00000258821|TTC5 ENSG00000136319|ENST00000258821|TTC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.5221557617188 1 994.52441 993.517133 0.66013 0.00065652 -1.3838 -0.0013762 -0.72368 -0.00071972 994.5235316020979 102.03 0.11791 95.857 95.78 95.898 -6.1757 7 5 2 0 0 0 0.2001 1 68494 68494 23.148 5.0134 1 2181900 71604 4815 47861 48903 83337 83337 0.020115531829901556 VPFVDAFQL 9 Unmodified _VPFVDAFQL_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2791748046875 2 518.279118 1034.54368 0.28665 0.00014856 0.065742 3.4073E-05 0.35239 0.00018264 518.278956965453 97.141 0.41896 96.898 96.727 97.146 -0.24277 31 18 2 0 0 0 0.48152 1 53122 53122 8.5933 3.3626 1 430630 71605 2503 47862 48904 83338 83338 0.027792420743253388 VPFVDAFQL 9 Unmodified _VPFVDAFQL_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000462527.2_1_10:120819077-120819266:-|nuORF ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.2792358398438 2 518.279118 1034.54368 NaN NaN NaN NaN NaN NaN NaN 96.941 1 96.934 96.434 97.434 -0.007019 0 0 0 0.20498 1 53834 53834 30.225 12.09 1 71606 2503 47862 48904 83339 83339 0.027792420743253388 VPFVETGISVM 11 Oxidation (M) _VPFVETGISVM(Oxidation (M))_ VPFVETGISVM(1) VPFVETGISVM(59) 0 0 1 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.8051147460938 2 597.807382 1193.60021 0.5165 0.00030877 -0.10282 -6.1464E-05 0.41368 0.0002473 597.8072582881591 67.448 0.5099 66.966 66.656 67.165 -0.48219 56 22 3 0 0 0 0.018566 1 36732 36732 58.679 22.552 1 4567000 71607 2325;6792;9151 47863 48905 83340 83340 402 0.011155018486761037 VPFVETGISVM 11 Oxidation (M) _VPFVETGISVM(Oxidation (M))_ VPFVETGISVM(1) VPFVETGISVM(50) 0 0 1 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.8085327148438 2 597.807382 1193.60021 0.53933 0.00032241 -0.42496 -0.00025404 0.11437 6.8371E-05 597.8069129666878 66.868 0.36868 66.886 66.713 67.082 0.018028 35 17 3 0 0 0 0.054439 1 36769 36769 49.933 13.806 1 2377200 71608 2325;6792;9151 47863 48905 83341 83341 402 0.011155018486761037 VPFVETGISVM 11 Oxidation (M) _VPFVETGISVM(Oxidation (M))_ VPFVETGISVM(1) VPFVETGISVM(59) 0 0 1 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.808349609375 2 597.807382 1193.60021 0.4358 0.00026052 -1.1491 -0.00068693 -0.71328 -0.00042641 597.8058358355772 74.931 0.3553 68.755 68.568 68.923 -6.1757 26 18 2 0 0 0 0.018566 1 49027 49027 58.679 8.7458 1 13380000 71609 2325;6792;9151 47863 48905 83342 83342 402 0.011155018486761037 VPFVETGISVM 11 Unmodified _VPFVETGISVM_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3107299804688 2 589.809925 1177.6053 0.86017 0.00050734 -1.3478 -0.00079495 -0.48762 -0.00028761 590.3104347703738 91.004 0.97501 84.828 84.46 85.435 -6.1757 169 56 4 0 0 0 0.016317 2 60199 60066;60199 78.149 3.2204 1 44720000 71610 2325;6792;9151 47863 48906 83343;83344 83344 0.02359805711307672 VPFVGKVHIGY 11 Unmodified _VPFVGKVHIGY_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.9009399414062 3 405.901003 1214.68118 0.14026 5.6932E-05 0.49278 0.00020002 0.63304 0.00025695 405.90117074268716 54.823 0.32026 54.756 54.6 54.92 -0.066936 51 15 4 0 0 0 0.018566 2 29838 29740;29838 46.022 28.898 1 29190000 71611 4362 47864 48907 83345;83346 83346 0.08242570673746741 VPFVGKVHIGY 11 Unmodified _VPFVGKVHIGY_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3482055664062 2 608.347866 1214.68118 0.4697 0.00028574 0.32888 0.00020007 0.79858 0.00048581 608.3482333238442 54.862 0.23708 54.793 54.661 54.898 -0.068737 27 11 3 0 0 0 0.0011251 1 29779 29779 81.89 62.633 1 4816000 71612 4362 47864 48907 83347 83347 0.08242570673746741 VPFVGKVHIGY 11 Unmodified _VPFVGKVHIGY_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.9015197753906 3 405.901003 1214.68118 1.0256 0.00041631 -0.145 -5.8855E-05 0.88065 0.00035746 405.90095714472517 80.241 0.78833 74.066 73.448 74.236 -6.1757 103 47 3 0 0 0 0.018566 3 52650 52397;52525;52650 46.022 29.456 1 69124000 71613 4362 47864 48907 83348;83349;83350 83350 0.08242570673746741 VPFVGKVHIGY 11 Unmodified _VPFVGKVHIGY_ 0 0 0 ENSG00000131979|ENST00000491895|GCH1;nc|ENSG00000131979|P30793-3|GCH1;nc|ENSG00000131979|P30793-2|GCH1;nc|ENSG00000131979|P30793-4|GCH1 ENSG00000131979|ENST00000491895|GCH1 ENSG00000131979|ENST00000491895|GCH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3461303710938 2 608.347866 1214.68118 0.66242 0.00040298 -0.34447 -0.00020956 0.31796 0.00019343 608.3478887437383 80.22 0.3113 74.044 73.841 74.152 -6.1757 33 18 2 0 0 0 0.00047726 2 52616 52481;52616 88.954 54.552 1 12976000 71614 4362 47864 48907 83351;83352 83352 0.08242570673746741 VPFVSSPP 8 Unmodified _VPFVSSPP_ 0 0 0 ENSG00000110318|ENST00000263468|CEP126 ENSG00000110318|ENST00000263468|CEP126 ENSG00000110318|ENST00000263468|CEP126 MULTI-MSMS AL20221201_MKP_PDAC_01 4 829.44775390625 1 829.445431 828.438155 1.1322 0.00093913 -0.076901 -6.3785E-05 1.0553 0.00087534 829.4451632017967 71.954 0.68021 65.778 65.443 66.123 -6.1757 72 36 3 0 0 0 0.41521 2 46878 46878;47010 42.968 8.7807 1 57870000 71615 2710 47865 48908 83353;83354 83353 0.017073259487233372 VPGAFGGP 8 Unmodified _VPGAFGGP_ 0 0 0 ENSG00000196660|ENST00000366926|SLC30A10;nc|ENSG00000196660|Q6XR72-3|SLC30A10 ENSG00000196660|ENST00000366926|SLC30A10 ENSG00000196660|ENST00000366926|SLC30A10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.2515563964844 2 351.184489 700.354425 0.095747 3.3625E-05 0.31547 0.00011079 0.41122 0.00014441 351.1846779232244 70.283 0.13096 69.804 69.738 69.869 -0.47903 7 5 2 0 0 0 8.7369 1 38457 38457 0 0 1 343640 71616 9856 47866 48909 83355 83355 -0.0077378542832775565 VPGASFYIG 9 Unmodified _VPGASFYIG_ 0 0 0 ENST00000458502.2_1_17:20744565-20744838:+|nuORF ENST00000458502.2_1_17:20744565-20744838:+|nuORF ENST00000458502.2_1_17:20744565-20744838:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.4671630859375 1 910.466895 909.459619 0.092808 8.4498E-05 1.0223 0.00093077 1.1151 0.0010153 910.4677645173431 71.43 0.28127 70.953 70.791 71.072 -0.47736 18 11 2 0 0 0 0.25297 1 39064 39064 19.439 1.304 1 866530 71617 13627 47867 48910 83356 83356 0.0012671097744032522 VPGATLRRLL 10 Unmodified _VPGATLRRLL_ 0 0 0 nc|ENSG00000173040|Q86UK5-3|EVC2;nc|ENSG00000173040|Q86UK5-2|EVC2;ENSG00000173040|ENST00000344408|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 nc|ENSG00000173040|Q86UK5-3|EVC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.3139038085938 2 548.353483 1094.69241 0.89847 0.00049268 -0.53444 -0.00029306 0.36404 0.00019962 548.353112490004 91.013 0.66453 84.838 84.523 85.188 -6.1757 99 38 3 0 0 0 0.23227 1 60198 60198 10.824 2.9138 1 56553000 71618 16386 47868 48911 83357 83357 0.14885392767905614 VPGDVMVI 8 Unmodified _VPGDVMVI_ 0 0 0 ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 MSMS AL20221201_MKP_PDAC_01 4 415.2271728515625 2 415.228039 828.441526 NaN NaN NaN NaN NaN NaN NaN 72.041 1 65.865 65.365 66.365 -6.1757 0 0 0 0.70013 1 47138 47138 28.173 7.302 1 71619 4527 47869 48912 83358 83358 0.02044252731081997 VPGFRSQFR 9 Unmodified _VPGFRSQFR_ 0 0 0 ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF ENST00000368966.9_3_6:109615628-109650288:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.3010864257812 2 547.298707 1092.58286 3.4861 0.0019079 2.7084 0.0014823 6.1946 0.0033903 547.2993793390501 99.526 0.15597 99.49 99.427 99.583 -0.036301 10 5 3 0 0 0 0.46577 1 55298 55298 9.3474 0.75416 1 1388800 71620 12288 47870 48913 83359 83359 0.04027387148562411 VPGGDPED 8 Unmodified _VPGGDPED_ 0 0 0 ENST00000596558.6_3_19:18649171-18649213:-|nuORF ENST00000596558.6_3_19:18649171-18649213:-|nuORF ENST00000596558.6_3_19:18649171-18649213:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8346557617188 2 393.169233 784.323913 NaN NaN NaN NaN NaN NaN NaN 57.603 1 57.603 57.103 58.103 0 0 0 0 0.97444 1 32058 32058 0.79363 0 1 71621 15767 47871 48914 83360 83360 -0.07687608604044271 VPGGKATL 8 Unmodified _VPGGKATL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.8114929199219 2 371.726521 741.438489 0.068547 2.5481E-05 4.1235 0.0015328 4.1921 0.0015583 371.7279113747086 63.1 0.21329 63.1 63.031 63.244 0 14 8 2 0 0 0 8.7369 1 35196 35196 0.79363 0 1 484610 71622 2543 47872 48915 83361 83361 0.05742745668578664 VPGGKATL 8 Unmodified _VPGGKATL_ 0 0 0 ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF ENSG00000108055|ENST00000361804|SMC3 ENSG00000108055|ENST00000361804|SMC3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 371.726521 741.438489 0.27805 0.00010336 4.957 0.0018426 5.235 0.001946 371.72802613786723 62.992 0.21955 62.971 62.869 63.089 -0.021614 -0.064638 0.00015001 NaN 0.79363 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1315300 71623 2543 47872 48915 0.05742745668578664 VPGGQHLICC 10 Unmodified _VPGGQHLICC_ 0 0 0 ENST00000398576.6_1_13:46701143-46701437:-|nuORF ENST00000398576.6_1_13:46701143-46701437:-|nuORF ENST00000398576.6_1_13:46701143-46701437:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.746826171875 2 513.746605 1025.47866 0.41799 0.00021474 0.99732 0.00051237 1.4153 0.00072711 513.7472771058548 67.203 0.46636 67.203 66.971 67.437 0 44 19 3 0 0 0 0.5905 1 37427 37427 11.64 2.2572 1 2148400 71624 12852 47873 48916 83362 83362 -0.03306398994823212 VPGHCGKQPW 10 Unmodified _VPGHCGKQPW_ 0 0 0 ENST00000415298.5_1_2:224642518-224702333:-|nuORF ENST00000415298.5_1_2:224642518-224702333:-|nuORF ENST00000415298.5_1_2:224642518-224702333:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.1837463378906 3 370.183404 1107.52838 0.91506 0.00033874 0.87837 0.00032516 1.7934 0.0006639 370.1837216497359 40.145 0.55171 35.616 35.401 35.952 -4.5294 121 45 3 0 0 0 0.65502 3 23823 23823;23960;24083 4.1895 0.86986 1 54506000 71625 13020 47874 48917 83363;83364;83365 83363 -0.02107947994522874 VPGHFTPVL 9 Unmodified _VPGHFTPVL_ 0 0 0 ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-6|NFIB ENSG00000147862|ENST00000380953|NFIB ENSG00000147862|ENST00000380953|NFIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7741088867188 2 483.774003 965.533452 0.32477 0.00015712 0.19326 9.3493E-05 0.51803 0.00025061 483.77403515021706 54.939 0.40306 54.461 54.309 54.712 -0.47798 30 19 2 0 0 0 0.078417 1 29810 29810 38.151 21.209 1 1428500 71626 5886 47875 48918 83366 83366 0.04930679139749827 VPGHFTPVL 9 Unmodified _VPGHFTPVL_ 0 0 0 ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-6|NFIB ENSG00000147862|ENST00000380953|NFIB ENSG00000147862|ENST00000380953|NFIB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 483.774003 965.533452 0.38953 0.00018845 0.27278 0.00013196 0.66231 0.00032041 483.7742054185257 54.657 0.15928 54.59 54.523 54.683 -0.066936 0.13426 0.00029825 NaN 38.151 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 717970 71627 5886 47875 48918 0.04930679139749827 VPGHLTEDL 9 Unmodified _VPGHLTEDL_ 0 0 0 nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN nc|ENSG00000145016|Q92622-3|RUBCN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7568969726562 2 490.756007 979.497461 0.18795 9.2236E-05 0.086151 4.2279E-05 0.2741 0.00013451 490.75645660978114 76.878 0.33279 76.878 76.637 76.97 0 27 18 2 0 0 0 0.2001 2 42644 42644;42742 23.148 23.148 1 2727600 71628 5663 47876 48919 83367;83368 83367 0.006891771722166595 VPGIRSPR 8 Unmodified _VPGIRSPR_ 0 0 0 ENST00000296785.7_1_5:72858805-72861416:-|nuORF ENST00000296785.7_1_5:72858805-72861416:-|nuORF ENST00000296785.7_1_5:72858805-72861416:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.2691345214844 2 441.269419 880.524284 NaN NaN NaN NaN NaN NaN NaN 20.395 1 20.406 19.906 20.906 0.010553 0 0 0 0.97444 1 10401 10401 2.3027 0 1 71629 11515 47877 48920 83369 83369 0.07924330574087435 VPGLFKDEM 9 Oxidation (M) _VPGLFKDEM(Oxidation (M))_ VPGLFKDEM(1) VPGLFKDEM(46) 0 0 1 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 ENSG00000277258|ENST00000620225|PCGF2 MSMS AL20221201_MKP_PDAC_01 4 526.2609252929688 2 526.260068 1050.50558 NaN NaN NaN NaN NaN NaN NaN 46.918 1 41.837 41.337 42.337 -5.0805 0 0 0 0.091025 1 29060 29060 45.7 7.5484 1 71630 10921 47878 48921 83370 83370 1740 -0.01765011902648439 VPGLFTRP 8 Unmodified _VPGLFTRP_ 0 0 0 REV__ENSG00000182858|ENST00000330817|ALG12 REV__ENSG00000182858|ENST00000330817|ALG12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 443.7163391113281 2 443.760895 885.507237 1.5531 0.0006892 -1.5738 -0.00069838 -0.020681 -9.1773E-06 443.76063299768094 33.84 0.30843 29.855 29.714 30.022 -3.9853 24 16 2 0 0 0 8.7369 1 19405 19405 12.532 6.7711 1 4544600 + 71631 23301 47879 48922 83371 83371 0.059904099682853484 VPGLLACC 8 Unmodified _VPGLLACC_ 0 0 0 ENST00000549307.5_1_12:58109828-58113249:+|nuORF;ENST00000550699.5_1_12:58109828-58111744:+|nuORF ENST00000549307.5_1_12:58109828-58113249:+|nuORF ENST00000549307.5_1_12:58109828-58113249:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.1968078613281 2 388.195685 774.376817 NaN NaN NaN NaN NaN NaN NaN 19.342 1 19.342 18.842 19.842 0 0 0 0 0.97444 1 9667 9667 0.79363 0 1 71632 15149 47880 48923 83372 83372 -0.019396453465901686 VPGLREQEL 9 Unmodified _VPGLREQEL_ 0 0 0 ENSG00000180628|ENST00000336126|PCGF5 ENSG00000180628|ENST00000336126|PCGF5 ENSG00000180628|ENST00000336126|PCGF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7904052734375 2 520.790381 1039.56621 0.44438 0.00023143 -0.78666 -0.00040969 -0.34229 -0.00017826 520.7902117225278 39.466 0.21421 39.466 39.381 39.595 0 15 9 2 0 0 0 0.07087 1 21167 21167 39.95 3.8227 1 2683200 71633 8914 47881 48924 83373 83373 0.048008414719333814 VPGPGTEGF 9 Unmodified _VPGPGTEGF_ 0 0 0 ENST00000525288.5_3_19:37314612-37328945:-|nuORF ENST00000525288.5_3_19:37314612-37328945:-|nuORF ENST00000525288.5_3_19:37314612-37328945:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 430.7476501464844 2 430.711068 859.407583 1.3308 0.00057321 0.65968 0.00028413 1.9905 0.00085734 430.71139068646 37.395 0.30112 33.111 32.955 33.256 -4.2835 28 17 2 0 0 0 0.18941 1 21893 21893 9.3474 0 1 6131500 71634 14794 47882 48925 83374 83374 -0.027744524363242817 VPGPRAAK 8 Unmodified _VPGPRAAK_ 0 0 0 nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1;ENST00000606372.5_1_1:2263981-2323005:-|nuORF nc|ENSG00000116151|Q5T089-2|MORN1 nc|ENSG00000116151|Q5T089-2|MORN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2456359863281 2 398.245412 794.476272 1.213 0.00048306 -0.066419 -2.6451E-05 1.1466 0.00045661 398.24534139849266 30.493 0.37361 26.996 26.779 27.153 -3.497 31 18 2 0 0 0 0.67481 2 17161 17161;17280 19.439 5.9311 1 30625000 71635 3199 47883 48926 83375;83376 83375 0.07081256654021217 VPGPTGLHY 9 Unmodified _VPGPTGLHY_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7474670410156 2 470.747985 939.481417 0.44099 0.00020759 -1.4119 -0.00066465 -0.97091 -0.00045705 470.7471307386078 39.401 0.28656 39.401 39.244 39.53 0 34 13 3 0 0 0 0.026094 2 21062 21062;21175 57.471 28.985 1 5896800 71636 3643 47884 48927 83377;83378 83377 0.009255157259985936 VPGPTGLHY 9 Unmodified _VPGPTGLHY_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7478332519531 2 470.747985 939.481417 0.03218 1.5149E-05 -3.5035 -0.0016493 -3.4713 -0.0016341 470.7458720744057 39.729 0.26314 39.432 39.285 39.548 -0.29716 27 12 3 0 0 0 0.016184 1 20957 20957 67.344 41.945 1 6217300 71637 3643 47884 48927 83379 83379 0.009255157259985936 VPGPTGLHY 9 Unmodified _VPGPTGLHY_ 0 0 0 nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 nc|ENSG00000122515|Q8NF64-3|ZMIZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7465209960938 2 470.747985 939.481417 0.52293 0.00024617 -2.3267 -0.0010953 -1.8038 -0.00084913 470.7472558715052 44.66 0.28564 39.808 39.662 39.948 -4.852 43 24 2 0 0 0 0.013472 2 27236 27236;27356 70.716 34.671 1 31743000 71638 3643 47884 48927 83380;83381 83380 0.009255157259985936 VPGPYPAAL 9 Unmodified _VPGPYPAAL_ 0 0 0 ENST00000274849.2_1_6:26597317-26597446:+|nuORF ENST00000274849.2_1_6:26597317-26597446:+|nuORF ENST00000274849.2_1_6:26597317-26597446:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.7476196289062 2 442.747453 883.480354 -0.0067277 -2.9787E-06 0.74861 0.00033145 0.74188 0.00032847 442.74772303276364 69.252 0.67392 68.771 68.506 69.18 -0.48071 66 28 3 0 0 0 0.22317 2 37807 37807;38017 20.871 3.9289 1 2787400 71639 11389 47885 48928 83382;83383 83382 0.0339530135709083 VPGQRTRPP 9 Unmodified _VPGQRTRPP_ 0 0 0 REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF REV__ENST00000263780.8_1_3:87276503-87276704:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7435302734375 2 504.290882 1006.56721 -0.15558 -7.846E-05 -2.7066 -0.0013649 -2.8622 -0.0014434 504.2897699500367 63.497 0.54892 63.01 62.622 63.171 -0.48617 40 24 2 0 0 0 0.20528 1 34506 34506 8.5933 5.7041 1 2538000 + 71640 25051 47886 48929 83384 83384 0.0641910063151272 VPGRHDIAF 9 Unmodified _VPGRHDIAF_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2741394042969 2 506.272158 1010.52976 -0.76108 -0.00038532 1.6614 0.00084111 0.90029 0.00045579 506.27314856934737 32.633 0.33747 32.633 32.513 32.851 0 29 17 2 0 0 0 0.047788 1 17057 17057 45.7 26.261 1 4076600 71641 1213;3902 47887 48930 83385 83385 0.024920093658806763 VPGRHDIAF 9 Unmodified _VPGRHDIAF_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2735290527344 2 506.272158 1010.52976 -0.61293 -0.00031031 1.4497 0.00073395 0.83679 0.00042364 506.2729290785961 32.712 0.4471 32.583 32.37 32.817 -0.12915 42 18 3 0 0 0 0.13231 2 16987 16987;17091 29.841 18.2 1 2807100 71642 1213;3902 47887 48930 83386;83387 83386 0.024920093658806763 VPGRHDIAF 9 Unmodified _VPGRHDIAF_ 0 0 0 ENSG00000077312|ENST00000243563|SNRPA;ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000077312|ENST00000243563|SNRPA;ENSG00000125870|ENST00000246071|SNRPB2 ENSG00000125870|ENST00000246071|SNRPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.27392578125 2 506.272158 1010.52976 0.41854 0.0002119 0.14501 7.3415E-05 0.56355 0.00028531 506.27218469813647 36.376 0.50321 32.183 31.899 32.402 -4.1928 59 30 3 0 0 0 0.098164 2 21133 21133;21256 33.445 15.299 1 61448000 71643 1213;3902 47887 48930 83388;83389 83388 0.024920093658806763 VPGRRLKRLL 10 Unmodified _VPGRRLKRLL_ 0 0 0 REV__ENST00000019019.6_1_X:48334728-48336351:+|nuORF REV__ENST00000019019.6_1_X:48334728-48336351:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.409912109375 2 604.409124 1206.80369 -0.66267 -0.00040053 0.17048 0.00010304 -0.4922 -0.00029749 604.4094301731973 103.61 0.12533 103.57 103.49 103.62 -0.04792 8 4 2 0 0 0 0.72607 1 57556 57556 0 0 1 2144200 + 71644 24703 47888 48931 83390 83390 0.20856452195857855 VPGRRLKRLL 10 Unmodified _VPGRRLKRLL_ 0 0 0 REV__ENST00000019019.6_1_X:48334728-48336351:+|nuORF REV__ENST00000019019.6_1_X:48334728-48336351:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 604.409124 1206.80369 -0.66267 -0.00040053 0.17048 0.00010304 -0.4922 -0.00029749 604.4094301731973 103.61 0.12533 103.57 103.49 103.62 -0.04792 0 0 NaN 0 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2144200 + 71645 24703 47888 48931 0.20856452195857855 VPGRRNKKK 9 Unmodified _VPGRRNKKK_ 0 0 0 REV__CON__Q0VBK2 REV__CON__Q0VBK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 361.9027709960938 3 361.568358 1081.68324 1.1588 0.000419 -1.7516 -0.00063331 -0.59272 -0.00021431 361.90229776014826 92.81 0.27 86.634 86.5 86.77 -6.1757 39 17 3 0 0 0 0.54213 1 61397 61397 4.897 0 1 17392000 + + 71646 16857 47889 48932 83391 83391 0.14567044202226498 VPGSAVLVF 9 Unmodified _VPGSAVLVF_ 0 0 0 nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9;nc|ENSG00000291029|Q75LS8|FKBP9P1;ENST00000475220.1_1_7:33038205-33044960:+|nuORF;ENST00000455909.5_1_7:55750344-55756724:-|nuORF nc|ENSG00000122642|O95302-2|FKBP9 nc|ENSG00000122642|O95302-2|FKBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 888.5194091796875 1 888.518931 887.511654 -0.4743 -0.00042143 -0.45033 -0.00040013 -0.92463 -0.00082155 888.5195052540521 78.818 0.34599 78.333 78.139 78.485 -0.48596 17 13 2 0 0 0 0.16226 1 43146 43146 26.884 9.9414 1 447610 71647 3650 47890 48933 83392 83392 0.0633987439118755 VPGSKNLL 8 Unmodified _VPGSKNLL_ 0 0 0 REV__ENST00000525083.5_1_11:126145223-126146937:+|nuORF REV__ENST00000525083.5_1_11:126145223-126146937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.2529602050781 2 414.252903 826.491253 0.014235 5.8967E-06 -0.29363 -0.00012164 -0.27939 -0.00011574 414.2527574023563 51.677 0.33965 51.243 51.079 51.418 -0.43367 41 17 3 0 0 0 0.61462 1 27932 27932 24.674 1.5255 1 18081000 + 71648 28344 47891 48934 83393 83393 0.07106703731381003 VPGSLFFPSR 10 Unmodified _VPGSLFFPSR_ 0 0 0 ENST00000415922.6_1_6:26659691-26659826:-|nuORF ENST00000415922.6_1_6:26659691-26659826:-|nuORF ENST00000415922.6_1_6:26659691-26659826:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8043823242188 2 553.803291 1105.59203 0.97846 0.00054187 -0.46127 -0.00025545 0.51719 0.00028642 553.8028509704164 72.126 1.1163 65.951 65.656 66.772 -6.1757 94 58 2 0 0 0 0.085354 1 47071 47071 49.933 9.9833 1 30611000 71649 13032 47892 48935 83394 83394 0.0434573571421879 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2814636230469 2 490.282192 978.549831 0.17256 8.4602E-05 -0.10008 -4.9067E-05 0.072479 3.5535E-05 490.28237698535133 62.89 0.25913 62.89 62.704 62.963 0 20 10 2 0 0 0 0.33553 1 35046 35046 25.399 2.2509 1 1022200 + 71650 24540 47893 48936 83395 83395 0.05969760305845284 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.5558471679688 1 979.557107 978.549831 0.076683 7.5115E-05 -1.2 -0.0011755 -1.1233 -0.0011004 979.5559131088633 62.858 0.37538 62.858 62.655 63.031 0 37 15 3 0 0 0 0.2178 1 35093 35093 32.305 0 1 6072900 + 71651 24540 47893 48936 83396 83396 0.05969760305845284 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 979.556640625 1 979.557107 978.549831 0.24423 0.00023924 -0.7147 -0.00070009 -0.47047 -0.00046085 979.5563432295982 63.268 0.41279 62.782 62.603 63.016 -0.48617 60 18 4 0 0 0 0.063761 1 34529 34529 54.774 26.287 1 28564000 + 71652 24540 47893 48936 83397 83397 0.05969760305845284 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 979.5559692382812 1 979.557107 978.549831 0.62981 0.00061694 -1.4309 -0.0014017 -0.80111 -0.00078474 979.5550282381524 62.876 0.19813 62.854 62.771 62.969 -0.021614 13 9 2 0 0 0 0.2178 1 34368 34368 32.305 0 1 2102100 + 71653 24540 47893 48936 83398 83398 0.05969760305845284 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.5563354492188 1 979.557107 978.549831 0.74651 0.00073125 -1.4818 -0.0014516 -0.73534 -0.00072031 979.5553580315419 70.235 0.51649 64.06 63.78 64.296 -6.1757 68 29 3 0 0 0 0.1028 1 45849 45849 46.021 15.384 1 101230000 + 71654 24540 47893 48936 83399 83399 0.05969760305845284 VPGSLIHLSG 10 Unmodified _VPGSLIHLSG_ 0 0 0 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 979.557107 978.549831 0.62981 0.00061694 -1.4309 -0.0014017 -0.80111 -0.00078474 979.5550282381524 62.876 0.19813 62.854 62.771 62.969 -0.021614 0.022888 -0.00051045 NaN 54.774 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2102100 + 71655 24540 47893 48936 0.05969760305845284 VPGSMCLC 8 Unmodified _VPGSMCLC_ 0 0 0 REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF REV__ENST00000472013.1_1_1:42925866-42925989:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8352661132812 2 405.171353 808.328152 NaN NaN NaN NaN NaN NaN NaN 40.828 1 40.828 40.328 41.328 0 0 0 0 0.9706 1 21973 21973 6.3541 0.59368 1 + 71656 27510 47894 48937 83400 83400 -0.08367881977983416 VPGSPEGP 8 Unmodified _VPGSPEGP_ 0 0 0 ENSG00000197852|ENST00000357260|INKA2 ENSG00000197852|ENST00000357260|INKA2 ENSG00000197852|ENST00000357260|INKA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.1837463378906 2 370.184686 738.354819 NaN NaN NaN NaN NaN NaN NaN 36.176 1 35.926 35.426 36.426 -0.2497 0 0 0 0.9706 1 18971 18971 6.3541 0 1 71657 10009 47895 48938 83401 83401 -0.024824104991353124 VPGSSLRIAL 10 Unmodified _VPGSSLRIAL_ 0 0 0 ENST00000358537.7_1_3:57994229-57994301:+|nuORF ENST00000358537.7_1_3:57994229-57994301:+|nuORF ENST00000358537.7_1_3:57994229-57994301:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8114318847656 2 506.811116 1011.60768 0.60666 0.00030746 -0.54941 -0.00027845 0.057256 2.9018E-05 506.81086047293144 50.883 0.29723 50.829 50.688 50.986 -0.053871 29 14 3 0 0 0 0.1942 1 27508 27508 34.402 3.1334 1 5017700 71658 12128 47896 48939 83402 83402 0.10234022231270501 VPGSSLRIAL 10 Unmodified _VPGSSLRIAL_ 0 0 0 ENST00000358537.7_1_3:57994229-57994301:+|nuORF ENST00000358537.7_1_3:57994229-57994301:+|nuORF ENST00000358537.7_1_3:57994229-57994301:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.811116 1011.60768 -0.34876 -0.00017675 0.16401 8.3123E-05 -0.18475 -9.3632E-05 506.8111495414071 51.228 0.2154 50.815 50.68 50.896 -0.41351 -0.0071734 0.00042102 NaN 34.402 19 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2421200 71659 12128 47896 48939 0.10234022231270501 VPGTARRV 8 Unmodified _VPGTARRV_ 0 0 0 REV__ENSG00000197892|ENST00000524189|KIF13B REV__ENSG00000197892|ENST00000524189|KIF13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2620849609375 2 428.261594 854.508634 1.0702 0.00045833 0.31718 0.00013584 1.3874 0.00059416 428.26165220460723 90.072 0.74923 83.896 83.526 84.275 -6.1757 130 42 4 0 0 0 0.80992 1 59293 59293 0.69038 0 1 223570000 + 71660 23965 47897 48940 83403 83403 0.0755604405703707 VPGTARRVR 9 Unmodified _VPGTARRVR_ 0 0 0 REV__ENSG00000197892|ENST00000524189|KIF13B REV__ENSG00000197892|ENST00000524189|KIF13B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.763916015625 2 506.312149 1010.60975 -0.3594 -0.00018197 2.16 0.0010936 1.8006 0.00091165 506.31300224767244 65.81 0.26366 65.326 65.169 65.433 -0.48428 14 10 2 0 0 0 0.19298 1 35929 35929 13.508 0 1 2363400 + 71661 23965 47898 48941 83404 83404 0.1048649575974423 VPGTPRGRP 9 Unmodified _VPGTPRGRP_ 0 0 0 ENST00000460696.1_1_1:5923876-5924089:-|nuORF ENST00000460696.1_1_1:5923876-5924089:-|nuORF ENST00000460696.1_1_1:5923876-5924089:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2808227539062 2 468.772326 935.530098 0.43471 0.00020378 2.0317 0.0009524 2.4664 0.0011562 468.77315976978684 76.977 0.27396 76.977 76.759 77.033 0 25 19 2 0 0 0 0.20528 1 42711 42711 8.5933 2.2392 1 2069900 71662 13644 47899 48942 83405 83405 0.05975429085754058 VPHAHPAT 8 Unmodified _VPHAHPAT_ 0 0 0 ENSG00000170276|ENST00000304298|HSPB2 ENSG00000170276|ENST00000304298|HSPB2 ENSG00000170276|ENST00000304298|HSPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2199096679688 2 415.219395 828.424236 0.73432 0.0003049 2.0106 0.00083484 2.7449 0.0011397 415.2200970216834 28.1 0.30855 24.951 24.788 25.097 -3.1482 42 16 3 0 0 0 0.41521 2 15592 15592;15709 42.968 8.7807 1 23895000 71663 7967 47900 48943 83406;83407 83406 0.0031609324026931063 VPHDELTEMER 11 Unmodified _VPHDELTEMER_ 0 0 0 REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.317626953125 2 678.316634 1354.61871 0.63093 0.00042797 0.14007 9.5012E-05 0.771 0.00052298 678.8178217949496 52.134 0.27734 46.399 46.207 46.484 -5.7345 22 18 2 0 0 0 0.18636 1 32853 32853 32.786 0 1 37059000 + 71664 17418 47901 48944 83408 83408 -0.044409882474383267 VPHDELTEMER 11 Unmodified _VPHDELTEMER_ 0 0 0 REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 678.316634 1354.61871 0.71896 0.00048768 0.56549 0.00038358 1.2844 0.00087126 678.8181836684475 46.036 0.22277 46.008 45.884 46.107 -0.028011 -0.19551 0.00043597 NaN 32.786 14 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1556900 + 71665 17418 47901 48944 -0.044409882474383267 VPHDELTEMER 11 Unmodified _VPHDELTEMER_ 0 0 0 REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF REV__ENST00000504778.5_1_5:54579003-54603452:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 678.316634 1354.61871 0.63093 0.00042797 0.14007 9.5012E-05 0.771 0.00052298 678.8178217949496 52.134 0.27734 46.399 46.207 46.484 -5.7345 0.19551 -0.00014117 NaN 32.786 22 18 2 NaN NaN NaN NaN 0 NaN NaN 0 37059000 + 71666 17418 47901 48944 -0.044409882474383267 VPHEPEMTY 9 Unmodified _VPHEPEMTY_ 0 0 0 REV__nc|ENSG00000105426|Q13332-4|PTPRS REV__nc|ENSG00000105426|Q13332-4|PTPRS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7515869140625 2 551.747324 1101.4801 0.37048 0.00020441 4.2785 0.0023607 4.649 0.0025651 551.749217274387 62.72 0.23394 62.72 62.589 62.823 0 14 9 2 0 0 0 0.39863 1 34968 34968 12.532 0 1 707580 + 71667 18424 47902 48945 83409 83409 -0.06658486425067167 VPHGFPSW 8 Unmodified _VPHGFPSW_ 0 0 0 REV__ENST00000418268.5_1_2:85583583-85584214:+|nuORF REV__ENST00000418268.5_1_2:85583583-85584214:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 463.2794494628906 2 463.729595 925.444637 1.23 0.0005704 0.26969 0.00012506 1.4997 0.00069546 463.7298365758337 96.363 0.11472 90.187 90.122 90.237 -6.1757 12 6 2 0 0 0 8.7369 1 63834 63834 5.7604 3.1829 1 9084100 + 71668 26798 47903 48946 83410 83410 -0.021067360999154516 VPHGHITSL 9 Unmodified _VPHGHITSL_ 0 0 0 ENSG00000156269|ENST00000286794|NAA11;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7654724121094 2 480.766709 959.518865 -0.22968 -0.00011042 -0.32714 -0.00015728 -0.55682 -0.0002677 480.7664704000536 24.992 0.17484 24.992 24.972 25.147 0 32 17 2 0 0 0 0.12841 1 12794 12794 30.225 8.4782 1 1869800 71669 6444 47904 48947 83411 83411 0.03748606991609904 VPHGHITSL 9 Unmodified _VPHGHITSL_ 0 0 0 ENSG00000156269|ENST00000286794|NAA11;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000102030|ENST00000464845|NAA10;ENST00000477882.1_1_X:153197755-153198123:-|nuORF ENSG00000156269|ENST00000286794|NAA11 ENSG00000156269|ENST00000286794|NAA11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7666015625 2 480.766709 959.518865 NaN NaN NaN NaN NaN NaN NaN 25.256 1 25.239 24.739 25.739 -0.017006 0 0 0 0.029091 1 12930 12930 67.344 25.249 1 71670 6444 47904 48947 83412 83412 0.03748606991609904 VPHGPTSHPE 10 Unmodified _VPHGPTSHPE_ 0 0 0 REV__ENSG00000179588|ENST00000319555|ZFPM1 REV__ENSG00000179588|ENST00000319555|ZFPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1739196777344 3 353.173562 1056.49886 NaN NaN NaN NaN NaN NaN NaN 15.505 1 15.505 15.005 16.005 0 0 0 0 0.96627 1 7474 7474 2.086 0 1 + 71671 23104 47905 48948 83413 83413 -0.027131887389941767 VPHGYEIEF 9 Unmodified _VPHGYEIEF_ 0 0 0 nc|ENSG00000087085|P22303-3|ACHE;nc|ENSG00000087085|P22303-4|ACHE;ENSG00000087085|ENST00000241069|ACHE;nc|ENSG00000087085|P22303-2|ACHE nc|ENSG00000087085|P22303-3|ACHE nc|ENSG00000087085|P22303-3|ACHE MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7640380859375 2 545.763832 1089.51311 0.7579 0.00041364 -1.6073 -0.00087722 -0.84943 -0.00046359 545.7635231339049 61.828 0.55462 55.652 55.351 55.905 -6.1757 85 29 4 0 0 0 0.2001 1 39744 39744 23.148 2.6948 1 77100000 71672 1450 47906 48949 83414 83414 -0.02806536310708907 VPHHPSDL 8 Unmodified _VPHHPSDL_ 0 0 0 ENST00000256682.8_1_12:49331590-49331659:-|nuORF ENST00000256682.8_1_12:49331590-49331659:-|nuORF ENST00000256682.8_1_12:49331590-49331659:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2313232421875 2 451.229959 900.445365 0.76255 0.00034408 1.2817 0.00057835 2.0443 0.00092244 451.2304647078547 60.549 0.53863 60.549 60.368 60.907 0 55 23 3 0 0 0 0.80624 1 33851 33851 2.8892 0 1 3368400 71673 11185 47907 48950 83415 83415 -0.008839414508543086 VPHIHCFLV 9 Unmodified _VPHIHCFLV_ 0 0 0 REV__ENSG00000183695|ENST00000329773|MRGPRX2 REV__ENSG00000183695|ENST00000329773|MRGPRX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.293212890625 2 532.78913 1063.56371 1.0253 0.00054628 0.67205 0.00035806 1.6974 0.00090434 532.7904900849459 50.499 1.5046 44.96 44.377 45.881 -5.5391 261 94 4 0 0 0 0.22317 1 32249 32249 20.871 20.871 1 351410000 + 71674 23368 47908 48951 83416 83416 0.034467145332882865 VPHKIITHL 9 Unmodified _VPHKIITHL_ 0 0 0 nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000481771.5_1_1:155179042-155180448:+|nuORF nc|ENSG00000173171|Q13505-3|MTX1 nc|ENSG00000173171|Q13505-3|MTX1 MSMS AL20221201_MKP_PDAC_01 4 353.2220764160156 3 353.222076 1056.6444 NaN NaN NaN NaN NaN NaN NaN 30.076 1 26.579 26.079 27.079 -3.497 0 0 0 0.041018 1 16950 16950 61.602 41.187 1 71675 8295 47909 48952 83417 83417 0.11834318847832037 VPHLGPPA 8 Unmodified _VPHLGPPA_ 0 0 0 REV__ENSG00000176102|ENST00000323959|CSTF3 REV__ENSG00000176102|ENST00000323959|CSTF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2276916503906 2 394.226688 786.438824 1.4595 0.00057539 0.061078 2.4078E-05 1.5206 0.00059947 394.2267149502271 54.268 0.27063 48.402 48.302 48.572 -5.8653 23 16 2 0 0 0 0.5245 1 34413 34413 32.454 8.2437 1 8554900 + 71676 22910 47910 48953 83418 83418 0.037061653884165935 VPHLQKVF 8 Unmodified _VPHLQKVF_ 0 0 0 ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2;nc|ENSG00000231991|A6NMY6|ANXA2P2 ENSG00000182718|ENST00000451270|ANXA2 ENSG00000182718|ENST00000451270|ANXA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2905578613281 2 484.28982 966.565087 0.47121 0.0002282 -1.4617 -0.00070788 -0.99048 -0.00047968 484.2903669060142 39.738 0.44012 39.743 39.564 40.004 0.0050545 34 20 3 0 0 0 0.5953 1 21146 21146 26.341 6.9023 1 1666300 71677 9079 47911 48954 83419 83419 0.08046671893703206 VPHLSDECAA 10 Unmodified _VPHLSDECAA_ 0 0 0 REV__ENSG00000253117|ENST00000254627|OC90 REV__ENSG00000253117|ENST00000254627|OC90 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 521.2908935546875 2 521.237124 1040.45969 2.3097 0.0012039 -2.8123 -0.0014659 -0.50256 -0.00026195 521.2355849211513 62.78 0.32155 56.605 56.378 56.7 -6.1757 25 15 2 0 0 0 0.22667 1 40408 40408 15.847 2.3393 1 9442200 + 71678 24507 47912 48955 83420 83420 -0.058916570848850824 VPHNAAVQVY 10 Unmodified _VPHNAAVQVY_ 0 0 0 ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2900390625 2 549.290548 1096.56654 -0.34746 -0.00019086 2.6136 0.0014356 2.2662 0.0012448 549.2917045740874 31.975 0.38455 31.975 31.72 32.105 0 34 18 3 0 0 0 0.04925 1 16671 16671 58.679 31.05 1 3819400 71679 471 47913 48956 83421 83421 0.022122611917893664 VPHNAAVQVY 10 Unmodified _VPHNAAVQVY_ 0 0 0 ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP ENSG00000013364|ENST00000357402|MVP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.29052734375 2 549.290548 1096.56654 0.0015069 8.2775E-07 0.94317 0.00051807 0.94467 0.0005189 549.2911875767202 31.934 0.19224 31.805 31.699 31.891 -0.12915 12 7 2 0 0 0 0.44373 1 16638 16638 19.257 8.4331 1 1230300 71680 471 47913 48956 83422 83422 0.022122611917893664 VPHNYGLVL 9 Unmodified _VPHNYGLVL_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2834777832031 2 506.284734 1010.55492 -0.90871 -0.00046006 0.063421 3.2109E-05 -0.84529 -0.00042796 506.284615786246 56.079 0.31415 55.593 55.414 55.728 -0.48554 35 15 4 0 0 0 0.06187 1 30401 30401 42.095 2.1372 1 12694000 71681 4865 47914 48957 83423 83423 0.05006064168458124 VPHNYGLVL 9 Unmodified _VPHNYGLVL_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2846374511719 2 506.284734 1010.55492 1.0344 0.00052373 -0.79149 -0.00040072 0.24296 0.000123 506.2843709761439 61.059 0.41305 54.911 54.762 55.175 -6.1478 35 21 2 0 0 0 0.038285 1 39345 39345 50.855 2.5092 1 33229000 71682 4865 47914 48957 83424 83424 0.05006064168458124 VPHNYGLVLY 10 Unmodified _VPHNYGLVLY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.81640625 2 587.816399 1173.61824 -0.11253 -6.6146E-05 0.12873 7.5668E-05 0.016198 9.5213E-06 587.8164854530995 60.519 0.40277 60.03 59.847 60.249 -0.48932 56 19 4 0 0 0 0.043729 2 33009 32911;33009 61.357 29.052 1 51499000 71683 4865 47915 48958 83425;83426 83426 0.038380048857106885 VPHNYGLVLY 10 Unmodified _VPHNYGLVLY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8163452148438 2 587.816399 1173.61824 0.4512 0.00026522 -0.58389 -0.00034322 -0.13269 -7.7995E-05 587.8161595403674 60.209 0.32356 60.156 59.977 60.3 -0.053059 44 17 3 0 0 0 0.024981 1 32868 32868 71.134 45.734 1 29150000 71684 4865 47915 48958 83427 83427 0.038380048857106885 VPHNYGLVLY 10 Unmodified _VPHNYGLVLY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8170166015625 2 587.816399 1173.61824 0.47142 0.00027711 -0.1732 -0.00010181 0.29822 0.0001753 587.8163901970897 66.795 0.61265 60.62 60.368 60.981 -6.1757 45 34 2 0 0 0 0.18021 1 43488 43488 36.127 15.673 1 17581000 71685 4865 47915 48958 83428 83428 0.038380048857106885 VPHNYGLVLY 10 Unmodified _VPHNYGLVLY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MSMS AL20221201_MKP_PDAC_01 4 587.8182373046875 2 587.816399 1173.61824 NaN NaN NaN NaN NaN NaN NaN 68.141 1 61.965 61.465 62.465 -6.1757 0 0 0 0.016764 1 44454 44454 74.423 41.637 1 71686 4865 47915 48958 83429 83429 0.038380048857106885 VPHNYGLVLY 10 Unmodified _VPHNYGLVLY_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 587.816399 1173.61824 0.46648 0.00027421 2.3561 0.0013849 2.8225 0.0016591 587.81719936837 60.117 0.1548 60.117 60.023 60.178 0 0.01656 0.0028464 NaN 71.134 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1049900 71687 4865 47915 48958 0.038380048857106885 VPHPNWPNHTL 11 Unmodified _VPHPNWPNHTL_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.8916320800781 3 437.891278 1310.652 0.11606 5.082E-05 -0.7009 -0.00030692 -0.58484 -0.0002561 437.8908698762824 41.453 0.39694 41.451 41.221 41.618 -0.0017929 49 18 4 0 0 0 0.0071133 2 22100 22100;22212 52.193 38.658 1 15738000 71688 6326 47916 48959 83430;83431 83430 0.009104263774588617 VPHPNWPNHTL 11 Unmodified _VPHPNWPNHTL_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.8915405273438 3 437.891278 1310.652 0.67397 0.00029512 0.74731 0.00032724 1.4213 0.00062236 437.8914397336749 46.194 0.55699 41.239 40.951 41.508 -4.9549 119 37 4 0 0 0 0.0041032 3 28451 28309;28451;28590 68.484 47.242 1 77877000 71689 6326 47916 48959 83432;83433;83434 83433 0.009104263774588617 VPHPNWPNHTL 11 Unmodified _VPHPNWPNHTL_ 0 0 0 ENSG00000154451|ENST00000370459|GBP5;nc|ENSG00000154451|Q96PP8-2|GBP5 ENSG00000154451|ENST00000370459|GBP5 ENSG00000154451|ENST00000370459|GBP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.333984375 2 656.333279 1310.652 0.38438 0.00025228 -0.51825 -0.00034014 -0.13387 -8.7866E-05 656.3329605026862 46.188 0.29158 41.234 41.035 41.327 -4.9549 28 19 2 0 0 0 0.0024728 1 28435 28435 79.596 51.363 1 10701000 71690 6326 47916 48959 83435 83435 0.009104263774588617 VPHQPAPPF 9 Unmodified _VPHQPAPPF_ 0 0 0 ENST00000421599.5_1_20:37076141-37077369:+|nuORF;ENST00000449351.5_1_20:37075363-37077305:+|nuORF;ENST00000440918.5_1_20:37075363-37076627:+|nuORF ENST00000421599.5_1_20:37076141-37077369:+|nuORF ENST00000421599.5_1_20:37076141-37077369:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2634887695312 2 495.263802 988.513051 0.47422 0.00023486 -0.20453 -0.0001013 0.26969 0.00013357 495.2636521749124 40.941 0.46782 40.637 40.461 40.929 -0.30304 53 22 3 0 0 0 0.052168 2 21608 21608;21719 44.407 21.671 1 19816000 71691 13111 47917 48960 83436;83437 83436 0.018335084799446122 VPHQPAPPF 9 Unmodified _VPHQPAPPF_ 0 0 0 ENST00000421599.5_1_20:37076141-37077369:+|nuORF;ENST00000449351.5_1_20:37075363-37077305:+|nuORF;ENST00000440918.5_1_20:37075363-37076627:+|nuORF ENST00000421599.5_1_20:37076141-37077369:+|nuORF ENST00000421599.5_1_20:37076141-37077369:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2634582519531 2 495.263802 988.513051 0.4241 0.00021004 0.22746 0.00011265 0.65156 0.00032269 495.2641269644075 45.251 0.5523 40.296 40.13 40.682 -4.9549 79 37 3 0 0 0 0.016184 2 27709 27709;27855 67.344 38.262 1 45856000 71692 13111 47917 48960 83438;83439 83438 0.018335084799446122 VPHRATVY 8 Unmodified _VPHRATVY_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7;PRMT7|p.A173V|1|0.16|ENSG00000132600|chr16:68339335-68339335|C/T|missense_variant nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7612915039062 2 471.761426 941.5083 NaN NaN NaN NaN NaN NaN NaN 17.565 1 17.565 17.065 18.065 0 0 0 0 0.97444 1 8665 8665 4.3292 1.44 1 71693 4425 47918 48961 83440 83440 0.03520624337170375 VPHRFQYL 8 Unmodified _VPHRFQYL_ 0 0 0 REV__nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 REV__nc|ENSG00000203877|Q5TAB7-2|RIPPLY2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.29052734375 2 530.290351 1058.56615 0.58192 0.00030858 -2.8506 -0.0015116 -2.2687 -0.001203 530.7899487033336 74.621 0.7196 74.621 74.15 74.869 0 61 32 3 0 0 0 0.80143 1 41322 41322 5.7604 1.0044 1 2377300 + 71694 24125 47919 48962 83441 83441 0.03920886262608292 VPHRQPRH 8 Unmodified _VPHRQPRH_ 0 0 0 ENST00000562235.5_1_16:67262534-67263013:+|nuORF ENST00000562235.5_1_16:67262534-67263013:+|nuORF ENST00000562235.5_1_16:67262534-67263013:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1027.40478515625 1 1026.57041 1025.56313 0.17583 0.00018051 0.57344 0.00058868 0.74928 0.00076919 1027.5730243519893 32.149 0.10776 32.178 32.13 32.237 0.029743 5 4 2 0 0 0 0.80975 1 16871 16871 0.79363 0 1 1324000 71695 15338 47920 48963 83442 83442 0.05137055928457812 VPHSAMLFI 9 Unmodified _VPHSAMLFI_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;ENST00000556516.1_1_14:71517389-71527455:+|nuORF nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7091064453125 2 507.775688 1013.53682 -0.26298 -0.00013353 -1.0571 -0.00053678 -1.3201 -0.00067031 507.77466236516426 65.816 0.31911 65.332 65.041 65.36 -0.48428 22 13 2 0 0 0 0.18118 1 35799 35799 12.532 0 1 1619400 71696 1869 47921 48964 83443 83443 0.03059605922112496 VPHSIIDGY 9 Unmodified _VPHSIIDGY_ 0 0 0 ENST00000496593.5_1_11:61404148-61405105:+|nuORF ENST00000496593.5_1_11:61404148-61405105:+|nuORF ENST00000496593.5_1_11:61404148-61405105:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7592163085938 2 500.758549 999.502546 NaN NaN NaN NaN NaN NaN NaN 43.075 1 42.764 42.264 43.264 -0.31039 0 0 0 0.18911 1 22905 22905 32.117 10.37 1 71697 14375 47922 48965 83444 83444 0.002774810348682877 VPHSIIDGY 9 Unmodified _VPHSIIDGY_ 0 0 0 ENST00000496593.5_1_11:61404148-61405105:+|nuORF ENST00000496593.5_1_11:61404148-61405105:+|nuORF ENST00000496593.5_1_11:61404148-61405105:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7579040527344 2 500.758549 999.502546 NaN NaN NaN NaN NaN NaN NaN 44.813 1 44.497 43.997 44.997 -0.31585 0 0 0 0.043758 1 23918 23918 60.39 20.432 1 71698 14375 47922 48965 83445 83445 0.002774810348682877 VPHSIINGY 9 Unmodified _VPHSIINGY_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2660522460938 2 500.266542 998.51853 -0.21582 -0.00010797 0.54519 0.00027274 0.32937 0.00016477 500.2665958482765 41.349 0.37974 41.349 41.119 41.499 0 60 18 5 0 0 0 0.012148 2 22200 22200;22308 74.423 34.474 1 264190000 71699 1518 47923 48966 83446;83447 83446 0.01921187271773306 VPHSIINGY 9 Unmodified _VPHSIINGY_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2664184570312 2 500.266542 998.51853 -0.52876 -0.00026452 0.036662 1.8341E-05 -0.4921 -0.00024618 500.2664910466538 41.619 0.40677 41.312 41.129 41.535 -0.30682 69 18 5 0 0 0 0.0083087 2 22003 22003;22105 97.075 48.729 1 1039599999.9999999 71700 1518 47923 48966 83448;83449 83448 0.01921187271773306 VPHSIINGY 9 Unmodified _VPHSIINGY_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2667846679688 2 500.266542 998.51853 -0.027915 -1.3965E-05 -0.32259 -0.00016138 -0.3505 -0.00017534 500.2663446372533 41.372 0.33426 41.37 41.18 41.515 -0.0017929 46 15 4 0 0 0 0.0082281 2 22042 22042;22149 92.822 52.865 1 52719000 71701 1518 47923 48966 83450;83451 83450 0.01921187271773306 VPHSIINGY 9 Unmodified _VPHSIINGY_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2669067382812 2 500.266542 998.51853 0.57732 0.00028881 -0.38785 -0.00019403 0.18946 9.4782E-05 500.26620635951747 46.431 0.57779 41.35 41.051 41.628 -5.0805 236 74 5 0 0 0 0.0088975 3 28800 28498;28644;28800 104.8 62.705 1 4795500000 71702 1518 47923 48966 83452;83453;83454 83454 0.01921187271773306 VPHSIINGY 9 Unmodified _VPHSIINGY_ 0 0 0 nc|ENSG00000089157|P05388-2|RPLP0;ENSG00000089157|ENST00000392514|RPLP0;nc|ENSG00000213553|Q8NHW5|RPLP0P6 nc|ENSG00000089157|P05388-2|RPLP0 nc|ENSG00000089157|P05388-2|RPLP0 MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.5252075195312 1 999.525807 998.51853 0.30928 0.00030913 -0.28116 -0.00028103 0.028114 2.8101E-05 999.5255621861784 46.416 0.2857 41.336 41.189 41.475 -5.0805 52 26 3 0 0 0 7.2069E-15 2 28575 28575;28718 183.04 114.96 1 58525000 71703 1518 47923 48966 83455;83456 83455 0.01921187271773306 VPHSPSLH 8 Unmodified _VPHSPSLH_ 0 0 0 REV__ENST00000468304.1_1_7:75510799-75517664:+|nuORF REV__ENST00000468304.1_1_7:75510799-75517664:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.7332763671875 2 437.232502 872.450451 0.64331 0.00028127 1.4797 0.00064697 2.123 0.00092825 437.2333426124814 48.1 0.60414 48.061 47.64 48.244 -0.038643 70 29 4 0 0 0 0.74163 1 25861 25861 13.508 0 1 18307000 + 71704 16972 47924 48967 83457 83457 0.009123624117705731 VPHSVPDAF 9 Unmodified _VPHSVPDAF_ 0 0 0 nc|ENSG00000085185|Q5H9F3-4|BCORL1;nc|ENSG00000085185|Q5H9F3-1|BCORL1;ENSG00000085185|ENST00000540052|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 nc|ENSG00000085185|Q5H9F3-4|BCORL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7452697753906 2 484.745442 967.476331 -0.038929 -1.887E-05 2.849 0.001381 2.81 0.0013621 484.74545550695973 41.913 0.39593 41.913 41.709 42.105 0 43 20 3 0 0 0 0.026094 1 22585 22585 57.471 19.497 1 7679000 71705 1402 47925 48968 83458 83458 -0.008707881366262882 VPHTITFPPL 10 Unmodified _VPHTITFPPL_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.3140869140625 2 561.321317 1120.62808 0.59625 0.00033469 -0.29825 -0.00016742 0.298 0.00016727 561.3213121749678 63.754 0.48292 63.268 62.948 63.431 -0.48617 72 23 4 0 0 0 0.60623 1 34655 34655 10.824 1.4765 1 41392000 + 71706 23192 47926 48969 83459 83459 0.07259192891069688 VPHTRPVSL 9 Unmodified _VPHTRPVSL_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2960510253906 2 503.295633 1004.57671 0.58508 0.00029447 0.15923 8.0138E-05 0.74431 0.00037461 503.29565467429745 29.854 0.36149 26.552 26.386 26.748 -3.3016 29 17 2 0 0 0 0.0099157 2 16784 16784;16891 80.676 36.904 1 43775000 71707 12988 47927 48970 83460;83461 83460 0.07460868917041807 VPIAGPIEP 9 Unmodified _VPIAGPIEP_ 0 0 0 REV__nc|ENSG00000138336|Q8NFU7-4|TET1 REV__nc|ENSG00000138336|Q8NFU7-4|TET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 893.514892578125 1 892.513845 891.506569 0.43471 0.00038798 0.90636 0.00080894 1.3411 0.0011969 892.5144428877879 60.132 0.20794 60.132 60.046 60.254 0 14 8 2 0 0 0 0.5029 1 33533 33533 7.2892 0 1 661800 + 71708 20321 47928 48971 83462 83462 0.05647570528572032 VPIAMNGYSY 10 Unmodified _VPIAMNGYSY_ 0 0 0 REV__ENSG00000123405|ENST00000435572|NFE2 REV__ENSG00000123405|ENST00000435572|NFE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.765380859375 2 557.765517 1113.51648 -0.36256 -0.00020222 -0.061102 -3.408E-05 -0.42366 -0.0002363 557.7654884053329 30.07 0.47432 30.07 29.888 30.363 0 40 22 2 0 0 0 0.46514 1 15582 15582 18.146 0 1 2976600 + 71709 19386 47929 48972 83463 83463 -0.03573609528348243 VPIASLTPY 9 Unmodified _VPIASLTPY_ 0 0 0 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 ENSG00000132383|ENST00000254719|RPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7740478515625 2 480.773668 959.532783 NaN NaN NaN NaN NaN NaN NaN 68.268 1 67.787 67.287 68.287 -0.48071 0 0 0 0.20498 1 37311 37311 30.225 0 1 71710 4401 47930 48973 83464 83464 0.051398397000298246 VPIDITVKL 9 Unmodified _VPIDITVKL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.3187866210938 2 499.318243 996.621933 0.48183 0.00024059 -0.42619 -0.00021281 0.055634 2.7779E-05 499.31793496768546 70.128 0.25663 70.164 70.055 70.312 0.035515 21 12 2 0 0 0 0.021948 1 38597 38597 61.602 26.67 1 3973500 71711 3410 47931 48974 83465 83465 0.12348674659574499 VPIDITVKL 9 Unmodified _VPIDITVKL_ 0 0 0 ENSG00000119041|ENST00000263956|GTF3C3;GTF3C3|p.N739Mfs*35|1|0.19|ENSG00000119041|chr2:196771792-196771792|T/-|frameshift_variant;nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 ENSG00000119041|ENST00000263956|GTF3C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.3184204101562 2 499.318243 996.621933 0.4846 0.00024197 -0.048482 -2.4208E-05 0.43612 0.00021776 499.3183905323855 78.327 0.99977 72.151 72.041 73.04 -6.1757 79 59 2 0 0 0 0.029718 1 51621 51621 55.503 20.571 1 22832000 71712 3410 47931 48974 83466 83466 0.12348674659574499 VPIDLQKVDQF 11 Unmodified _VPIDLQKVDQF_ 0 0 0 ENSG00000198056|ENST00000338193|PRIM1 ENSG00000198056|ENST00000338193|PRIM1 ENSG00000198056|ENST00000338193|PRIM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.3577270507812 2 651.358628 1300.7027 0.47392 0.00030869 -0.91879 -0.00059846 -0.44486 -0.00028977 651.3579030371092 63.969 0.19393 63.484 63.398 63.592 -0.48512 17 10 2 0 0 0 0.17129 1 34882 34882 34.222 20.316 1 1595400 71713 10044 47932 48975 83467 83467 0.0643791091181356 VPIEHITY 8 Unmodified _VPIEHITY_ 0 0 0 REV__nc|ENSG00000103249|P51798-2|CLCN7 REV__nc|ENSG00000103249|P51798-2|CLCN7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7640380859375 2 486.263468 970.512382 -0.15951 -7.7563E-05 2.1979 0.0010687 2.0384 0.00099118 486.2656953940731 29.403 0.30878 29.403 29.161 29.47 0 35 14 3 0 0 0 0.74163 1 15179 15179 13.508 1.2672 1 836460 + 71714 18295 47933 48976 83468 83468 0.025946690402292916 VPIELFRPL 9 Unmodified _VPIELFRPL_ 0 0 0 ENST00000482361.1_1_6:41877193-41888846:-|nuORF ENST00000482361.1_1_6:41877193-41888846:-|nuORF ENST00000482361.1_1_6:41877193-41888846:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3330688476562 2 542.331685 1082.64882 0.20679 0.00011215 1.2177 0.00066038 1.4245 0.00077253 542.3322315079944 79.598 0.35463 79.653 79.495 79.849 0.054977 28 13 3 0 0 0 0.12357 1 43986 43986 39.95 24.103 1 2117000 71715 14102 47934 48977 83469 83469 0.11079783270747612 VPIEQKHEVW 10 Unmodified _VPIEQKHEVW_ 0 0 0 ENSG00000102921|ENST00000262384|N4BP1;ENST00000564124.5_1_16:48580029-48653834:-|nuORF ENSG00000102921|ENST00000262384|N4BP1 ENSG00000102921|ENST00000262384|N4BP1 MSMS AL20221201_MKP_PDAC_01 4 422.2281188964844 3 422.227667 1263.66117 NaN NaN NaN NaN NaN NaN NaN 37.613 1 33.244 32.744 33.744 -4.3689 0 0 0 0.25043 1 22094 22094 39.923 24.384 1 71716 2083 47935 48978 83470 83470 0.03988774943127282 VPIFHCRCHYR 11 Unmodified _VPIFHCRCHYR_ 0 0 0 ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL ENSG00000165899|ENST00000547103|OTOGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 716.349365234375 2 715.850258 1429.68596 0.73681 0.00052745 -3.4056 -0.0024379 -2.6688 -0.0019104 715.8477411528027 50.528 0.30771 50.115 49.971 50.278 -0.41351 29 14 3 0 0 0 0.63851 1 27198 27198 9.3831 0.63772 1 4601100 71717 7402 47936 48979 83471 83471 -0.011691917268080942 VPIFHLQNV 9 Unmodified _VPIFHLQNV_ 0 0 0 REV__ENSG00000071894|ENST00000616140|CPSF1 REV__ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.2062377929688 3 356.206315 1065.59712 0.027333 9.736E-06 0.3021 0.00010761 0.32944 0.00011735 356.20641167451413 33.893 0.43033 33.922 33.672 34.103 0.028934 60 18 5 0 0 0 0.37804 1 17908 17908 8.7454 1.2683 1 81989000 + 71718 17500 47937 48980 83472 83472 0.06694039576859723 VPIFTLLQFFF 11 Unmodified _VPIFTLLQFFF_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.9107971191406 3 457.928558 1370.76385 0.53563 0.00024528 0.27368 0.00012532 0.80931 0.00037061 457.9287550442052 39.624 0.24651 39.636 39.489 39.736 0.011456 25 11 3 0 0 0 0.30533 1 21107 21107 3.0723 0.22898 1 1786600 71719 646 47938 48981 83473 83473 0.09329467681868664 VPIGATPEY 9 Unmodified _VPIGATPEY_ 0 0 0 nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2;ENST00000536506.5_1_12:6669839-6672276:-|nuORF nc|ENSG00000111641|P46087-3|NOP2 nc|ENSG00000111641|P46087-3|NOP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7474975585938 2 473.74765 945.480748 NaN NaN NaN NaN NaN NaN NaN 44.176 1 44.176 43.676 44.676 0 0 0 0 0.086291 1 24027 24027 46.921 16.696 1 71720 2802 47939 48982 83474 83474 0.0058267628628527746 VPIGFREQLVL 11 Unmodified _VPIGFREQLVL_ 0 0 0 REV__ENST00000307746.8_1_4:5016941-5021095:-|nuORF REV__ENST00000307746.8_1_4:5016941-5021095:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 635.8800659179688 2 635.87953 1269.74451 NaN NaN NaN NaN NaN NaN NaN 98.118 1 91.942 91.442 92.442 -6.1757 0 0 0 0.66488 1 65046 65046 18.373 3.1246 1 + 71721 25392 47940 48983 83475 83475 0.12042511390973232 VPIGGVLHDF 10 Unmodified _VPIGGVLHDF_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8623657226562 3 351.862437 1052.56548 0.8608 0.00030288 -0.24996 -8.795E-05 0.61085 0.00021493 351.8623490389304 42.769 0.3232 42.769 42.586 42.909 0 49 16 4 0 0 0 0.62068 1 23134 23134 5.7834 0 1 16850000 + + 71722 16861 47941 48984 83476 83476 0.04130046822865552 VPIGGVLHDF 10 Unmodified _VPIGGVLHDF_ 0 0 0 REV__CON__Q1A7A4 REV__CON__Q1A7A4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.8630981445312 3 351.862437 1052.56548 2.288 0.00080507 -0.19642 -6.9115E-05 2.0916 0.00073596 351.86224925481474 47.677 0.53128 42.443 42.197 42.728 -5.2339 71 31 3 0 0 0 0.52888 1 29654 29654 8.9762 0.23084 1 30848000 + + 71723 16861 47941 48984 83477 83477 0.04130046822865552 VPIIEDSTDFF 11 Unmodified _VPIIEDSTDFF_ 0 0 0 ENSG00000136010|ENST00000258494|ALDH1L2;nc|ENSG00000136010|Q3SY69-3|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8152465820312 2 641.813719 1281.61288 0.668 0.00042873 1.0164 0.00065232 1.6844 0.0010811 641.8143712823642 68.605 0.37349 68.631 68.397 68.77 0.025154 32 17 3 0 0 0 0.6249 1 37666 37666 10.074 3.8681 1 2898200 71724 4774 47942 48985 83478 83478 -0.016657634874491123 VPIITATGY 9 Unmodified _VPIITATGY_ 0 0 0 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 ENSG00000101986|ENST00000218104|ABCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.5245971679688 1 934.52441 933.517133 0.24383 0.00022786 1.5649 0.0014625 1.8088 0.0016903 934.5255191954976 59.239 0.18868 58.748 58.604 58.792 -0.49079 9 8 2 0 0 0 0.078417 1 32198 32198 38.151 7.9264 1 595330 71725 2006 47943 48986 83479 83479 0.04771553183002197 VPIKDIRNLY 10 Unmodified _VPIKDIRNLY_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.9120483398438 3 410.911679 1229.71321 0.90528 0.00037199 -0.3204 -0.00013165 0.58488 0.00024033 410.91153271120766 46.501 0.24253 46.467 46.329 46.572 -0.033417 23 11 3 0 0 0 0.22922 1 25021 25021 31.636 13.773 1 3460200 71726 3478 47944 48987 83480 83480 0.10753938356901926 VPIMGVMG 8 Unmodified _VPIMGVMG_ 0 0 0 REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.21337890625 2 402.211335 802.408117 NaN NaN NaN NaN NaN NaN NaN 41.221 1 36.613 36.113 37.113 -4.6079 0 0 0 0.9706 1 24722 24722 6.3541 0 1 + 71727 20992 47945 48988 83481 83481 -0.000990723124800752 VPINIQPKPI 10 Unmodified _VPINIQPKPI_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5693359375 3 373.569253 1117.68593 0.31959 0.00011939 -0.051334 -1.9177E-05 0.26826 0.00010021 373.5694165726676 54.832 0.21688 54.765 54.663 54.88 -0.066936 20 10 3 0 0 0 0.69126 1 29809 29809 3.8763 0.28927 1 2470800 71728 2904 47946 48989 83482 83482 0.1317945481650895 VPINIQPKPI 10 Unmodified _VPINIQPKPI_ 0 0 0 ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL ENSG00000112624|ENST00000314073|BICRAL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 373.569253 1117.68593 0.27727 0.00010358 0.4531 0.00016926 0.73037 0.00027284 373.9036748657092 55.121 0.24546 54.643 54.528 54.774 -0.47798 -0.060993 0.00023563 NaN 3.8763 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3157900 71729 2904 47946 48989 0.1317945481650895 VPIPDVYQTY 10 Unmodified _VPIPDVYQTY_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8056030273438 2 597.805697 1193.59684 -0.024039 -1.4371E-05 0.52436 0.00031346 0.50032 0.00029909 597.8056534782497 65.659 0.34621 65.659 65.447 65.793 0 36 14 4 0 0 0 0.52888 1 36676 36676 14.838 7.549 1 4878200 71730 7051 47947 48990 83483 83483 0.007785750663288127 VPIPDVYQTY 10 Unmodified _VPIPDVYQTY_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.8054809570312 2 597.805697 1193.59684 0.17669 0.00010562 -0.45517 -0.0002721 -0.27848 -0.00016648 597.8051398222974 66.254 0.33705 65.771 65.608 65.946 -0.48323 46 18 3 0 0 0 0.27276 1 36140 36140 29.082 7.5446 1 17058000 71731 7051 47947 48990 83484 83484 0.007785750663288127 VPIPDVYQTY 10 Unmodified _VPIPDVYQTY_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47;ENST00000510871.5_1_4:40427923-40438677:-|nuORF ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.8064575195312 2 597.805697 1193.59684 0.32123 0.00019203 0.21448 0.00012822 0.53571 0.00032025 597.8055056545916 73.352 0.49466 67.177 66.93 67.425 -6.1757 53 23 3 0 0 0 0.18021 2 47895 47895;48012 36.127 1.7253 1 57952000 71732 7051 47947 48990 83485;83486 83485 0.007785750663288127 VPIPTTEEL 9 Unmodified _VPIPTTEEL_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.541015625 1 998.540454 997.533177 -0.075174 -7.5065E-05 -0.024612 -2.4576E-05 -0.099786 -9.9641E-05 998.5411138797936 58.771 0.17962 58.771 58.63 58.809 0 12 7 2 0 0 0 0.019303 1 32710 32710 64.236 22.142 1 710600 71733 2028 47948 48991 83487 83487 0.034312146292336365 VPIPTVNQY 9 Unmodified _VPIPTVNQY_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7822875976562 2 515.782025 1029.5495 -0.027292 -1.4077E-05 0.73939 0.00038136 0.7121 0.00036729 515.7823525203703 55.161 0.31895 55.161 54.986 55.305 0 27 13 3 0 0 0 0.087258 1 30607 30607 36.044 11.37 1 2086400 71734 790 47949 48992 83488 83488 0.035903405860153725 VPIPTVNQY 9 Unmodified _VPIPTVNQY_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7822875976562 2 515.782025 1029.5495 -0.084646 -4.3659E-05 -0.18051 -9.3103E-05 -0.26515 -0.00013676 515.7819324526907 55.802 0.38599 55.324 55.152 55.538 -0.47798 33 18 2 0 0 0 0.013323 2 30241 30241;30346 71.134 35.089 1 10744000 71735 790 47949 48992 83489;83490 83489 0.035903405860153725 VPIPTVNQY 9 Unmodified _VPIPTVNQY_ 0 0 0 nc|ENSG00000057252|P35610-3|SOAT1;nc|ENSG00000057252|P35610-2|SOAT1;ENSG00000057252|ENST00000367619|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 nc|ENSG00000057252|P35610-3|SOAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7833251953125 2 515.782025 1029.5495 0.73456 0.00037887 1.1856 0.00061151 1.9202 0.00099039 515.7821384996668 63.275 0.50319 57.099 56.803 57.306 -6.1757 68 28 3 0 0 0 0.019303 2 40787 40787;40926 64.236 19.829 1 60182000 71736 790 47949 48992 83491;83492 83491 0.035903405860153725 VPIQLEDEI 9 Unmodified _VPIQLEDEI_ 0 0 0 REV__ENSG00000035687|ENST00000366535|ADSS2 REV__ENSG00000035687|ENST00000366535|ADSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2850341796875 2 528.284597 1054.55464 0.40569 0.00021432 -0.10128 -5.3505E-05 0.30441 0.00016081 528.2844923977011 83.936 0.84914 83.936 83.315 84.165 0 82 44 4 0 0 0 0.55144 1 46377 46377 4.3292 0 1 5248700 + 71737 17164 47950 48993 83493 83493 0.029545996579372513 VPIQSSVVL 9 Unmodified _VPIQSSVVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 941.567138671875 1 941.566609 940.559333 0.12638 0.000119 0.84237 0.00079315 0.96875 0.00091215 941.5674690356501 61.057 0.24138 61.057 60.929 61.171 0 16 9 2 0 0 0 0.15471 1 34014 34014 27.629 13.723 1 592630 71738 5293;15470 47951 48994 83494 83494 0.0866752859137705 VPIQSSVVL 9 Unmodified _VPIQSSVVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2870788574219 2 471.286943 940.559333 0.02767 1.3041E-05 0.79938 0.00037674 0.82705 0.00038978 471.28710360592913 61.526 0.42312 61.036 60.818 61.241 -0.48932 48 19 3 0 0 0 0.015445 2 33552 33456;33552 68.081 24.222 1 7679300 71739 5293;15470 47951 48994 83495;83496 83496 0.0866752859137705 VPIQSSVVL 9 Unmodified _VPIQSSVVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 941.565673828125 1 941.566609 940.559333 -0.085342 -8.0355E-05 1.1542 0.0010868 1.0689 0.0010064 941.5675486930317 61.529 0.32227 61.04 60.858 61.18 -0.48932 27 14 3 0 0 0 0.013041 2 33478 33478;33574 71.922 28.064 1 3718900 71740 5293;15470 47951 48994 83497;83498 83497 0.0866752859137705 VPIQSSVVL 9 Unmodified _VPIQSSVVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 941.5665283203125 1 941.566609 940.559333 0.41136 0.00038732 0.88341 0.00083179 1.2948 0.0012191 941.5671654568728 68.612 0.37663 62.436 62.257 62.633 -6.1757 23 21 2 0 0 0 0.0044708 2 44704 44704;44835 118.89 53.66 1 13356000 71741 5293;15470 47951 48994 83499;83500 83499 0.0866752859137705 VPIQSSVVL 9 Unmodified _VPIQSSVVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;nc|ENSG00000140992|O15530-4|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1;ENST00000570136.5_1_16:2588053-2611615:+|nuORF nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2876586914062 2 471.286943 940.559333 0.78568 0.00037028 0.05716 2.6939E-05 0.84284 0.00039722 471.2869137080798 68.635 0.46671 62.459 62.187 62.654 -6.1757 58 26 3 0 0 0 0.015445 1 44789 44789 68.081 19.735 1 40269000 71742 5293;15470 47951 48994 83501 83501 0.0866752859137705 VPIQTYPSI 9 Unmodified _VPIQTYPSI_ 0 0 0 REV__DSC1|p.I283Sfs*38|1|0.23|ENSG00000134765|chr18:31145703-31145703|T/-|frameshift_variant REV__DSC1|p.I283Sfs*38|1|0.23|ENSG00000134765|chr18:31145703-31145703|T/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.779052734375 2 509.2844 1016.55425 0.21435 0.00010916 0.0025341 1.2906E-06 0.21688 0.00011045 509.28403797038254 87.782 0.28536 87.278 87.136 87.421 -0.50423 30 13 3 0 0 0 0.48152 1 47972 47972 8.5933 0 1 1894800 + 71743 16912 47952 48995 83502 83502 0.04663224728756177 VPIREQGNIY 10 Unmodified _VPIREQGNIY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8214721679688 2 594.822212 1187.62987 -0.65403 -0.00038903 1.8872 0.0011226 1.2332 0.00073354 594.823156780513 34.225 0.18437 34.225 34.123 34.308 0 21 9 3 0 0 0 0.036856 1 17996 17996 65.474 17.128 1 9136300 71744 2384 47953 48996 83503 83503 0.04356201909035917 VPIREQGNIY 10 Unmodified _VPIREQGNIY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8220825195312 2 594.822212 1187.62987 NaN NaN NaN NaN NaN NaN NaN 34.399 1 34.207 33.707 34.707 -0.19131 0 0 0 0.57148 1 17966 17966 26.268 11.02 1 71745 2384 47953 48996 83504 83504 0.04356201909035917 VPIREQGNIY 10 Unmodified _VPIREQGNIY_ 0 0 0 ENST00000489856.1_1_7:116165116-116166890:+|nuORF;ENSG00000105974|ENST00000341049|CAV1 ENST00000489856.1_1_7:116165116-116166890:+|nuORF ENST00000489856.1_1_7:116165116-116166890:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8219604492188 2 594.822212 1187.62987 0.4897 0.00029128 0.17183 0.00010221 0.66153 0.00039349 594.8222972316647 39.1 0.36806 34.649 34.414 34.782 -4.4509 57 23 3 0 0 0 0.014262 2 23064 23064;23215 65.474 29.429 1 31703000 71746 2384 47953 48996 83505;83506 83505 0.04356201909035917 VPIRKNLRY 9 Unmodified _VPIRKNLRY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.9091796875 3 386.90838 1157.70331 0.052503 2.0314E-05 0.95078 0.00036787 1.0033 0.00038818 386.90873130360126 20.535 0.19971 20.546 20.451 20.651 0.010553 21 8 3 0 0 0 0.2546 1 10478 10478 19.362 14.646 1 2537400 71747 3760 47954 48997 83507 83507 0.13076795142160336 VPIRKNLRY 9 Unmodified _VPIRKNLRY_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.2125549316406 3 386.90838 1157.70331 0.55704 0.00021552 0.13439 5.1997E-05 0.69143 0.00026752 386.90844277527054 23.571 0.39197 20.744 20.523 20.915 -2.8273 58 23 3 0 0 0 0.21493 1 12834 12834 4.897 2.1618 1 42623000 71748 3760 47954 48997 83508 83508 0.13076795142160336 VPISDLHIL 9 Unmodified _VPISDLHIL_ 0 0 0 REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L REV__nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.8003234863281 2 503.800217 1005.58588 NaN NaN NaN NaN NaN NaN NaN 62.101 1 62.101 61.601 62.601 0 0 0 0 0.20498 1 34630 34630 30.225 1.738 1 + 71749 17561 47955 48998 83509 83509 0.08331217482702868 VPISEEGTPVL 11 Unmodified _VPISEEGTPVL_ 0 0 0 nc|ENSG00000127603|O94854|MACF1;nc|ENSG00000127603|O94854-4|MACF1 nc|ENSG00000127603|O94854|MACF1 nc|ENSG00000127603|O94854|MACF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.8119506835938 2 570.810979 1139.6074 0.4089 0.00023341 -1.0708 -0.00061122 -0.66189 -0.00037781 570.8111695406196 58.43 0.4203 58.43 58.233 58.654 0 38 16 3 0 0 0 0.0097967 2 32499 32499;32602 68.081 35.295 1 9611500 71750 16177 47956 48999 83510;83511 83510 0.04318557720762328 VPISLTVENKQ 11 Unmodified _VPISLTVENKQ_ 0 0 0 REV__ENSG00000140015|ENST00000322893|KCNH5 REV__ENSG00000140015|ENST00000322893|KCNH5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2371215820312 3 409.902961 1226.68705 0.83887 0.00034385 -1.1127 -0.00045609 -0.27381 -0.00011224 410.23677255528486 77.522 0.78117 71.347 70.973 71.754 -6.1757 103 45 3 0 0 0 0.68282 1 50704 50704 5.8681 0.82062 1 37559000 + 71751 20446 47957 49000 83512 83512 0.08277624394736449 VPISSFPLTL 10 Unmodified _VPISSFPLTL_ 0 0 0 REV__ENSG00000181143|ENST00000397910|MUC16 REV__ENSG00000181143|ENST00000397910|MUC16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7933959960938 2 537.3157 1072.61685 0.19802 0.0001064 -2.3891 -0.0012837 -2.191 -0.0011773 537.3139429967014 64.77 0.26854 64.77 64.65 64.919 0 25 11 3 0 0 0 0.20941 1 36172 36172 26.884 3.7352 1 2638600 + 71752 23192 47958 49001 83513 83513 0.08344370796953626 VPITDQHIL 9 Unmodified _VPITDQHIL_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A;ZC3H12A|p.R200W|1|0.1|ENSG00000163874|chr1:37481615-37481615|C/T|missense_variant ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2948608398438 2 518.295299 1034.57605 NaN NaN NaN NaN NaN NaN NaN 48.946 1 48.946 48.446 49.446 0 0 0 0 0.076083 1 26894 26894 49.554 18.918 1 71753 7089 47959 49002 83514 83514 0.060140294773418645 VPITDQHIL 9 Unmodified _VPITDQHIL_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A;ZC3H12A|p.R200W|1|0.1|ENSG00000163874|chr1:37481615-37481615|C/T|missense_variant ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.294677734375 2 518.295299 1034.57605 1.1773 0.00061018 -0.054014 -2.7995E-05 1.1233 0.00058218 518.2951422789728 55.217 0.44336 49.295 49.031 49.474 -5.9211 38 27 2 0 0 0 0.040683 1 35046 35046 49.554 24.155 1 15354000 71754 7089 47959 49002 83515 83515 0.060140294773418645 VPITDQHIL 9 Unmodified _VPITDQHIL_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A;ZC3H12A|p.R200W|1|0.1|ENSG00000163874|chr1:37481615-37481615|C/T|missense_variant ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.295299 1034.57605 0.71477 0.00037046 -0.29571 -0.00015326 0.41907 0.0002172 518.2947847870685 49.714 0.17558 49.322 49.198 49.374 -0.3923 -0.018675 -0.00030474 NaN 49.554 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1312500 71755 7089 47959 49002 0.060140294773418645 VPITESTFL 9 Unmodified _VPITESTFL_ 0 0 0 REV__nc|ENSG00000080802|O95628-5|CNOT4 REV__nc|ENSG00000080802|O95628-5|CNOT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.77685546875 2 503.776408 1005.53826 0.37668 0.00018976 0.40637 0.00020472 0.78305 0.00039448 503.77651300731657 71.996 0.29835 71.996 71.861 72.16 0 17 13 2 0 0 0 0.37804 1 40107 40107 13.508 0 1 671280 + 71756 17674 47960 49003 83516 83516 0.03571518491855841 VPIVDIMFNDF 11 Unmodified _VPIVDIMFNDF_ 0 0 0 nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1 nc|ENSG00000130635|P20908-2|COL5A1 nc|ENSG00000130635|P20908-2|COL5A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 655.328125 2 655.328482 1308.64241 NaN NaN NaN NaN NaN NaN NaN 102.43 1 102.38 101.88 102.88 -0.045853 0 0 0 0.94184 1 56894 56894 1.1933 0 1 71757 4230 47961 49004 83517 83517 0.0004347725707702921 VPIVPVVY 8 Unmodified _VPIVPVVY_ 0 0 0 ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000472820.1_1_9:139568206-139571631:-|nuORF ENST00000472820.1_1_9:139568206-139571631:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 885.5411987304688 1 885.544417 884.537141 -1.2781 -0.0011318 -0.080904 -7.1644E-05 -1.359 -0.0012035 885.5441624387274 77.491 0.29497 77.008 76.848 77.143 -0.4826 26 14 2 0 0 0 0.32738 2 42366 42366;42470 52.334 24.161 1 3134200 71758 7901 47962 49005 83518;83519 83518 0.09025348913610287 VPIVPVVY 8 Unmodified _VPIVPVVY_ 0 0 0 ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000472820.1_1_9:139568206-139571631:-|nuORF ENST00000472820.1_1_9:139568206-139571631:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2750549316406 2 443.275847 884.537141 NaN NaN NaN NaN NaN NaN NaN 77.44 1 76.957 76.457 77.457 -0.4826 0 0 0 0.62523 1 42394 42394 32.454 15.367 1 71759 7901 47962 49005 83520 83520 0.09025348913610287 VPIVPVVY 8 Unmodified _VPIVPVVY_ 0 0 0 ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000472820.1_1_9:139568206-139571631:-|nuORF ENST00000472820.1_1_9:139568206-139571631:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 885.545166015625 1 885.544417 884.537141 0.61075 0.00054085 0.18463 0.0001635 0.79538 0.00070435 885.54453440045 89.421 0.44944 83.245 83.058 83.508 -6.1757 35 24 2 0 0 0 0.079329 2 59004 59004;59126 108.76 59.089 1 10265000 71760 7901 47962 49005 83521;83522 83521 0.09025348913610287 VPIVPVVY 8 Unmodified _VPIVPVVY_ 0 0 0 ENST00000472820.1_1_9:139568206-139571631:-|nuORF;nc|ENSG00000169692|O15120-2|AGPAT2;ENSG00000169692|ENST00000371696|AGPAT2 ENST00000472820.1_1_9:139568206-139571631:-|nuORF ENST00000472820.1_1_9:139568206-139571631:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.2767028808594 2 443.275847 884.537141 1.3176 0.00058406 0.17907 7.9379E-05 1.4967 0.00066344 443.27586465980477 89.401 0.30046 83.225 83.076 83.376 -6.1757 23 16 2 0 0 0 0.2373 1 59060 59060 64.081 41.628 1 8878000 71761 7901 47962 49005 83523 83523 0.09025348913610287 VPKDGLKS 8 Unmodified _VPKDGLKS_ 0 0 0 nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1;nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-16|NR3C1;nc|ENSG00000113580|P04150-15|NR3C1;nc|ENSG00000113580|P04150-14|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 nc|ENSG00000113580|P04150-7|NR3C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2518920898438 2 422.25036 842.486168 1.8488 0.00078065 2.7991 0.0011819 4.6479 0.0019626 422.2516362516907 103.4 0.15823 97.223 97.141 97.299 -6.1757 51 28 3 0 0 0 0.80722 1 69328 69328 2.3027 0 1 18310000 71762 2977 47963 49006 83524 83524 0.05862399868772172 VPKDRLSLV 9 Unmodified _VPKDRLSLV_ 0 0 0 nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1 nc|ENSG00000163814|Q9H5V8-2|CDCP1 nc|ENSG00000163814|Q9H5V8-2|CDCP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2704467773438 2 513.818941 1025.62333 0.30903 0.00015879 0.37361 0.00019197 0.68265 0.00035076 513.8187301478572 52.766 0.17696 52.314 52.28 52.457 -0.45173 11 8 2 0 0 0 0.20554 1 28583 28583 9.3831 1.2276 1 1144700 71763 7076 47964 49007 83525 83525 0.11154308748336916 VPKENSLIL 9 Unmodified _VPKENSLIL_ 0 0 0 ENSG00000131652|ENST00000326266|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;nc|ENSG00000131652|Q86W42-3|THOC6 ENSG00000131652|ENST00000326266|THOC6 ENSG00000131652|ENST00000326266|THOC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.8059387207031 2 506.8055 1011.59645 0.79462 0.00040272 1.9069 0.00096644 2.7015 0.0013692 506.8054447438059 49.52 0.27729 49.52 49.393 49.671 0 25 11 3 0 0 0 0.044011 1 27269 27269 47.749 3.9763 1 3491600 71764 4340 47965 49008 83526 83526 0.0911120013714708 VPKIFYVQLT 10 Unmodified _VPKIFYVQLT_ 0 0 0 nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-7|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2;ENST00000521451.5_1_8:74528012-74659064:-|nuORF nc|ENSG00000040341|Q9NUL3-8|STAU2 nc|ENSG00000040341|Q9NUL3-8|STAU2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.357421875 2 604.357899 1206.70125 -0.12402 -7.4954E-05 -0.77643 -0.00046924 -0.90046 -0.0005442 604.3573741630307 97.288 0.72363 97.288 96.931 97.654 0 133 34 5 0 0 0 0.72292 2 53608 53608;53909 0.35063 0 1 32719000 71765 649 47966 49009 83527;83528 83527 0.10616321613679247 VPKIGNIL 8 Unmodified _VPKIGNIL_ 0 0 0 nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 853.552978515625 1 853.550565 852.543289 1.4323 0.0012226 0.70077 0.00059814 2.1331 0.0018207 853.5509790223548 108.11 2.1454 101.94 100.83 102.97 -6.1757 571 382 2 0 0 0 0.80975 6 72064 72064;72168;72272;72382;72492;72706 0.79363 0 1 5654400 71766 4729 47967 49010 83529;83530;83531;83532;83533;83534 83529 0.11111867145143606 VPKIKGNR 8 Unmodified _VPKIKGNR_ 0 0 0 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2956237792969 2 456.292894 910.571235 -0.33121 -0.00015113 2.6132 0.0011924 2.282 0.0010413 456.294028853705 101.73 0.81542 101.68 101.32 102.14 -0.045853 37 27 2 0 0 0 0.80992 1 56479 56479 0.69038 0 1 2320100 71767 9597 47968 49011 83535 83535 0.11237190125223151 VPKIKGNR 8 Unmodified _VPKIKGNR_ 0 0 0 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 456.292894 910.571235 0.49075 0.00022393 1.1019 0.00050279 1.5926 0.00072671 456.293522703495 101.6 0.5161 101.6 101.32 101.83 0 -0.017858 -0.00017494 NaN 0.69038 35 23 2 NaN NaN NaN NaN 0 NaN NaN 0 467140 71768 9597 47968 49011 0.11237190125223151 VPKIKGNR 8 Unmodified _VPKIKGNR_ 0 0 0 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 ENSG00000187806|ENST00000341689|TMEM202 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 456.292894 910.571235 0.21574 9.8438E-05 1.0761 0.000491 1.2918 0.00058944 456.29346288929133 101.69 0.63698 101.58 101.3 101.94 -0.11613 -0.043581 -0.0001985 NaN 0.69038 48 28 2 NaN NaN NaN NaN 0 NaN NaN 0 630730 71769 9597 47968 49011 0.11237190125223151 VPKKPKRKKRR 11 Unmodified _VPKKPKRKKRR_ 0 0 0 ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653 ENST00000590548.5_1_19:11597897-11616622:-|nuORF ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.3279724121094 3 474.328161 1419.96265 NaN NaN NaN NaN NaN NaN NaN 65.258 1 65.258 64.758 65.758 0 0 0 0 0.9435 1 36403 36403 0 0 1 71770 6817 47969 49012 83536 83536 0.2694716582395813 VPKKRHKSLL 10 Unmodified _VPKKRHKSLL_ 0 0 0 ENST00000509041.5_1_4:71841034-71841175:+|nuORF ENST00000509041.5_1_4:71841034-71841175:+|nuORF ENST00000509041.5_1_4:71841034-71841175:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3959350585938 2 603.395682 1204.77681 NaN NaN NaN NaN NaN NaN NaN 91.71 1 91.71 91.21 92.21 0 0 0 0 1.0061 1 50716 50716 0 0 1 71771 14574 47970 49013 83537 83537 0.18261343584663337 VPKLDPAIAP 10 Unmodified _VPKLDPAIAP_ 0 0 0 REV__nc|ENSG00000152939|Q8N4S9-2|MARVELD2 REV__nc|ENSG00000152939|Q8N4S9-2|MARVELD2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7607421875 2 510.808042 1019.60153 0.89457 0.00045695 -0.32862 -0.00016786 0.56596 0.00028909 510.807928218652 54.978 0.22083 49.112 49.058 49.279 -5.8653 22 13 2 0 0 0 0.23566 1 35057 35057 7.2892 1.5288 1 36701000 + 71772 21141 47971 49014 83538 83538 0.09251503999757915 VPKLKVCAL 9 Carbamidomethyl (C) _VPKLKVC(Carbamidomethyl (C))AL_ VPKLKVC(1)AL VPKLKVC(82)AL 0 1 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000416734.1_1_7:121080890-121081274:-|nuORF;nc|ENSG00000063177|Q07020-2|RPL18 ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3209838867188 2 514.320263 1026.62597 0.49197 0.00025303 0.60543 0.00031138 1.0974 0.00056441 514.3207867685525 46.126 0.3895 41.171 40.951 41.341 -4.9549 76 25 4 0 0 0 0.0095811 1 28474 28474 81.613 31.68 1 94382000 71773 858 47972 49015 83539 83539 72 0.11372440881609691 VPKLLQKR 8 Unmodified _VPKLLQKR_ 0 0 0 REV__nc|ENSG00000196678|A8K979-3|ERI2 REV__nc|ENSG00000196678|A8K979-3|ERI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.3335876464844 2 491.332019 980.649485 1.5398 0.00075655 0.73857 0.00036288 2.2784 0.0011194 491.33271982464436 104.02 0.17741 97.849 97.797 97.974 -6.1757 87 53 2 0 0 0 0.80992 1 69701 69701 0.69038 0 1 13142000 + 71774 23860 47973 49016 83540 83540 0.15838622710464278 VPKMIPFC 8 Unmodified _VPKMIPFC_ 0 0 0 REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.4913940429688 1 934.488893 933.481616 0.53148 0.00049666 0.24069 0.00022492 0.77217 0.00072159 934.4890114248718 52.236 0.2023 51.802 51.669 51.871 -0.43367 18 9 3 0 0 0 0.80624 1 28229 28229 2.8892 0 1 1841900 + 71775 25094 47974 49017 83541 83541 0.012214761299901511 VPKMKKSLY 9 Unmodified _VPKMKKSLY_ 0 0 0 ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN ENSG00000106819|ENST00000375544|ASPN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3245239257812 2 547.325545 1092.63654 0.84799 0.00046413 -1.9535 -0.0010692 -1.1055 -0.00060506 547.3246160099668 80.003 0.33466 79.514 79.354 79.689 -0.48932 26 12 3 0 0 0 0.18465 1 43855 43855 24.674 1.5255 1 1213200 71776 2463 47975 49018 83542 83542 0.09392423536087335 VPKMLDHSCLF 11 Unmodified _VPKMLDHSCLF_ 0 0 0 ENSG00000147905|ENST00000336755|ZCCHC7 ENSG00000147905|ENST00000336755|ZCCHC7 ENSG00000147905|ENST00000336755|ZCCHC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.2706298828125 2 645.322676 1288.6308 NaN NaN NaN NaN NaN NaN NaN 66.659 1 66.176 65.676 66.676 -0.48323 0 0 0 0.92234 1 36405 36405 6.2058 0.9089 1 71777 5890 47976 49019 83543 83543 -0.001970430379060417 VPKNEKKRDT 10 Unmodified _VPKNEKKRDT_ 0 0 0 REV__ENST00000393278.6_1_3:129152912-129156655:-|nuORF REV__ENST00000393278.6_1_3:129152912-129156655:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.5682983398438 3 405.566571 1213.67788 NaN NaN NaN NaN NaN NaN NaN 14.682 1 12.179 11.679 12.679 -2.5029 0 0 0 0.97855 1 7474 7474 1.4551 0.44154 1 + 71778 26417 47977 49020 83544 83544 0.0795927582908007 VPKNLFFFFFF 11 Unmodified _VPKNLFFFFFF_ 0 0 0 ENST00000590135.5_1_19:36234478-36235075:-|nuORF;ENST00000586476.5_1_19:36234478-36235258:-|nuORF ENST00000590135.5_1_19:36234478-36235075:-|nuORF ENST00000590135.5_1_19:36234478-36235075:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 727.3909912109375 2 726.889367 1451.76418 0.095747 6.9598E-05 -1.0319 -0.00075007 -0.93615 -0.00068047 726.8884203614623 61.27 0.73685 61.27 60.811 61.548 0 42 32 2 0 0 0 0.72952 3 34024 34024;34121;34228 1.4819 1.1313 1 756540 71779 15620 47978 49021 83545;83546;83547 83545 0.05636887401738022 VPKPDLDSY 9 Unmodified _VPKPDLDSY_ 0 0 0 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 ENSG00000147536|ENST00000276533|GINS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2639770507812 2 517.263665 1032.51278 0.42885 0.00022183 -0.43486 -0.00022493 -0.0060075 -3.1075E-06 517.2639736224297 37.111 0.32186 37.111 36.916 37.238 0 31 15 3 0 0 0 0.0086209 1 19681 19681 89.401 49.443 1 7176800 71780 5860 47979 49022 83548 83548 -0.00217956030564892 VPKPLCLL 8 Unmodified _VPKPLCLL_ 0 0 0 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 ENSG00000173769|ENST00000309765|TOPAZ1 MSMS AL20221201_MKP_PDAC_01 4 441.779052734375 2 441.777699 881.540846 NaN NaN NaN NaN NaN NaN NaN 18.849 1 16.228 15.728 16.728 -2.6215 0 0 0 0.95201 1 9951 9951 10.183 0.83596 1 71781 8362 47980 49023 83549 83549 0.09533695415814236 VPKPVFTRV 9 Unmodified _VPKPVFTRV_ 0 0 0 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3 MSMS AL20221201_MKP_PDAC_01 4 521.82470703125 2 521.824027 1041.6335 NaN NaN NaN NaN NaN NaN NaN 25.992 1 23.041 22.541 23.541 -2.9511 0 0 0 0.6557 1 14273 14273 10.824 0 1 + 71782 21791 47981 49024 83550 83550 0.11434916473581325 VPKRARPP 8 Unmodified _VPKRARPP_ 0 0 0 REV__ENSG00000092330|ENST00000267415|TINF2 REV__ENSG00000092330|ENST00000267415|TINF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.7930603027344 2 460.793061 919.571569 0.12108 5.5791E-05 1.2605 0.00058081 1.3815 0.0006366 460.79347098670354 32.951 0.3442 32.981 32.864 33.208 0.029747 22 14 2 0 0 0 0.80676 1 17327 17327 2.5775 0 1 898270 + 71783 17909 47982 49025 83551 83551 0.10856609845075127 VPKRDHALL 9 Unmodified _VPKRDHALL_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.2142639160156 3 350.213581 1047.61891 1.7066 0.00059766 0.081639 2.8591E-05 1.7882 0.00062625 350.2136244543739 21.894 0.45843 19.16 18.935 19.394 -2.7348 71 25 3 0 0 0 0.14 2 11770 11662;11770 27.223 9.0769 1 9116300 71784 4211 47983 49026 83552;83553 83553 0.09700844325402613 VPKRDHALL 9 Unmodified _VPKRDHALL_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.783447265625 2 524.816733 1047.61891 1.0597 0.00055612 -0.50529 -0.00026519 0.55436 0.00029094 524.8166362612889 21.884 0.20236 19.149 19.072 19.274 -2.7348 12 11 2 0 0 0 0.18735 1 11793 11793 9.3831 1.473 1 940460 71785 4211 47983 49026 83554 83554 0.09700844325402613 VPKRGDGLEF 10 Unmodified _VPKRGDGLEF_ 0 0 0 REV__ENSG00000248333|ENST00000341832|CDK11B REV__ENSG00000248333|ENST00000341832|CDK11B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3037719726562 2 559.303655 1116.59276 0.86524 0.00048393 -1.3808 -0.00077231 -0.5156 -0.00028838 559.8035113800898 47.323 0.2042 46.97 46.838 47.042 -0.3526 16 9 2 0 0 0 0.40136 1 25372 25372 21.537 8.4945 1 4073300 + 71786 24487 47984 49027 83555 83555 0.03912530363299993 VPKSLVSNL 9 Unmodified _VPKSLVSNL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35;ENST00000246911.6_1_17:41158964-41165399:+|nuORF nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7633666992188 2 478.792392 955.570232 0.71055 0.0003402 -1.2735 -0.00060974 -0.56295 -0.00026954 478.79227242572284 46.685 0.19257 46.348 46.231 46.424 -0.33664 16 9 2 0 0 0 0.14565 1 25018 25018 31.268 7.2478 1 2683000 71787 972 47985 49028 83556 83556 0.09066930965661868 VPKSLWPR 8 Unmodified _VPKSLWPR_ 0 0 0 ENST00000540534.5_1_20:62271877-62272036:-|nuORF ENST00000540534.5_1_20:62271877-62272036:-|nuORF ENST00000540534.5_1_20:62271877-62272036:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7959289550781 2 491.795269 981.575986 0.79005 0.00038854 1.0161 0.00049972 1.8062 0.00088826 491.7956657129042 43.172 0.29048 43.157 43.042 43.333 -0.015671 23 13 2 0 0 0 0.78849 1 23125 23125 9.3474 0.75416 1 7018100 71788 15032 47986 49029 83557 83557 0.08446074267988024 VPKSRERI 8 Unmodified _VPKSRERI_ 0 0 0 REV__ENSG00000111341|ENST00000539261|MGP REV__ENSG00000111341|ENST00000539261|MGP MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.8021850585938 2 492.801083 983.587613 1.0014 0.00049347 0.96286 0.0004745 1.9642 0.00096797 492.80150984952024 30.389 0.41643 26.892 26.678 27.094 -3.497 45 20 3 0 0 0 0.57045 1 17215 17215 28.487 1.6032 1 33104000 + 71789 18750 47987 49030 83558 83558 0.09516271291329303 VPKVMSGTQL 10 Unmodified _VPKVMSGTQL_ 0 0 0 REV__ENSG00000169122|ENST00000519262|FAM110B REV__ENSG00000169122|ENST00000519262|FAM110B MSMS AL20221201_MKP_PDAC_01 4 530.2947387695312 2 530.296985 1058.57942 NaN NaN NaN NaN NaN NaN NaN 81.961 1 75.785 75.285 76.285 -6.1757 0 0 0 0.76313 1 53820 53820 13.906 0.86358 1 + 71790 22377 47988 49031 83559 83559 0.05246956259702529 VPKVSFSS 8 Unmodified _VPKVSFSS_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 850.4688720703125 1 850.466895 849.459619 0.20266 0.00017236 0.035229 2.9961E-05 0.23789 0.00020232 850.4674731072494 57.997 0.33736 57.997 57.869 58.206 0 23 13 2 0 0 0 0.6895 1 32388 32388 18.135 0 1 1085600 71791 9384 47989 49032 83560 83560 0.028867109774409982 VPKVVGSAV 9 Unmodified _VPKVVGSAV_ 0 0 0 ENSG00000198492|ENST00000373812|YTHDF2;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENST00000604759.1_1_14:39684292-39684520:+|nuORF ENSG00000198492|ENST00000373812|YTHDF2 ENSG00000198492|ENST00000373812|YTHDF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2678833007812 2 428.268553 854.522553 1.3333 0.00057102 -1.1257 -0.00048211 0.20761 8.8911E-05 428.2680720372851 37.095 0.34209 32.812 32.632 32.974 -4.2835 36 20 2 0 0 0 0.017075 2 21663 21663;21808 66.457 24.617 1 9934800 71792 10096 47990 49033 83561;83562 83561 0.08947276765479728 VPLAAPIKV 9 Unmodified _VPLAAPIKV_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.3021850585938 2 454.302396 906.590239 0.22124 0.00010051 0.48805 0.00022172 0.70929 0.00032223 454.3025246093161 59.536 0.27276 59.045 58.898 59.171 -0.49079 21 12 2 0 0 0 0.25297 1 32397 32397 19.439 4.8573 1 1825600 + 71793 20785 47991 49034 83563 83563 0.13320726696281326 VPLAAPIKV 9 Unmodified _VPLAAPIKV_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 454.302396 906.590239 0.22124 0.00010051 0.48805 0.00022172 0.70929 0.00032223 454.3025246093161 59.536 0.27276 59.045 58.898 59.171 -0.49079 0.067554 0.00032992 NaN 19.439 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1825600 + 71794 20785 47991 49034 0.13320726696281326 VPLAAPIKV 9 Unmodified _VPLAAPIKV_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 454.302396 906.590239 0.71303 0.00032393 -0.36237 -0.00016463 0.35065 0.0001593 454.30212001454146 59.162 0.2024 59.101 58.964 59.166 -0.060719 0.12407 -0.00044278 NaN 19.439 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1880700 + 71795 20785 47991 49034 0.13320726696281326 VPLAAPIKV 9 Unmodified _VPLAAPIKV_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 454.302396 906.590239 0.95401 0.00043341 0.17413 7.9109E-05 1.1281 0.00051252 454.30235757525355 64.961 0.39125 58.786 58.591 58.982 -6.1757 -0.19162 4.4692E-05 NaN 19.439 35 21 2 NaN NaN NaN NaN 0 NaN NaN 0 8794000 + 71796 20785 47991 49034 0.13320726696281326 VPLAASGIL 9 Unmodified _VPLAASGIL_ 0 0 0 REV__ENST00000350777.6_1_11:119002615-119003380:+|nuORF REV__ENST00000350777.6_1_11:119002615-119003380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.76318359375 2 420.763104 839.511654 -0.013286 -5.5902E-06 0.75132 0.00031613 0.73803 0.00031054 420.76334919003494 61.522 0.25701 61.033 60.901 61.158 -0.48932 20 11 2 0 0 0 0.16776 1 33512 33512 26.341 0 1 1120200 + 71797 25781 47992 49035 83564 83564 0.08547874391183541 VPLAASGIL 9 Unmodified _VPLAASGIL_ 0 0 0 REV__ENST00000350777.6_1_11:119002615-119003380:+|nuORF REV__ENST00000350777.6_1_11:119002615-119003380:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 420.763104 839.511654 -0.013286 -5.5902E-06 0.75132 0.00031613 0.73803 0.00031054 420.76334919003494 61.522 0.25701 61.033 60.901 61.158 -0.48932 -0.024772 -0.00013159 NaN 26.341 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1120200 + 71798 25781 47992 49035 0.08547874391183541 VPLADSFRHLY 11 Unmodified _VPLADSFRHLY_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.90234375 3 439.903183 1316.68772 0.97317 0.0004281 -1.3302 -0.00058514 -0.35699 -0.00015704 439.9025193378008 57.018 0.19761 56.95 56.857 57.055 -0.068176 13 9 2 0 0 0 0.38865 1 31036 31036 22.109 9.2363 1 2477300 71799 1880 47993 49036 83565 83565 0.04204463834503258 VPLADSFRHLY 11 Unmodified _VPLADSFRHLY_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENST00000557054.1_1_14:20923524-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20221201_MKP_PDAC_01 4 439.9022827148438 3 439.903183 1316.68772 NaN NaN NaN NaN NaN NaN NaN 78.537 1 72.361 71.861 72.861 -6.1757 0 0 0 0.75606 1 51411 51411 14.171 4.6268 1 71800 1880 47993 49036 83566 83566 0.04204463834503258 VPLADSPGF 9 Unmodified _VPLADSPGF_ 0 0 0 FGF16|p.G125Efs*10|1|0.05|ENSG00000196468|chrX:77454255-77454256|-/AGGATGT|frameshift_variant;ENSG00000196468|ENST00000439435|FGF16 FGF16|p.G125Efs*10|1|0.05|ENSG00000196468|chrX:77454255-77454256|-/AGGATGT|frameshift_variant FGF16|p.G125Efs*10|1|0.05|ENSG00000196468|chrX:77454255-77454256|-/AGGATGT|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 451.73486328125 2 451.734543 901.454533 0.309 0.00013959 0.12748 5.7586E-05 0.43648 0.00019717 451.7346031441518 53.316 0.18056 52.864 52.762 52.943 -0.45173 12 8 2 0 0 0 0.48152 1 28856 28856 8.5933 0 1 694360 71801 9824 47994 49037 83567 83567 -0.00013592885181878955 VPLAKGTL 8 Unmodified _VPLAKGTL_ 0 0 0 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 ENSG00000119285|ENST00000366582|HEATR1 MSMS AL20221201_MKP_PDAC_01 4 399.9425048828125 2 399.757821 797.501089 NaN NaN NaN NaN NaN NaN NaN 12.034 1 9.5519 9.0519 10.052 -2.482 0 0 0 0.97444 1 6068 6068 0.79363 0 1 71802 3420 47995 49038 83568 83568 0.09423891736776113 VPLAMDTEI 9 Unmodified _VPLAMDTEI_ 0 0 0 ENSG00000181234|ENST00000435159|TMEM132C ENSG00000181234|ENST00000435159|TMEM132C ENSG00000181234|ENST00000435159|TMEM132C MSMS AL20221201_MKP_PDAC_01 4 494.7533569335938 2 494.754618 987.494683 NaN NaN NaN NaN NaN NaN NaN 82.432 1 76.257 75.757 76.757 -6.1757 0 0 0 0.57317 1 54146 54146 13.508 0 1 71803 8958 47996 49039 83569 83569 0.0004358572306273345 VPLAQAQAL 9 Unmodified _VPLAQAQAL_ 0 0 0 ENST00000498665.1_1_2:70527944-70529143:-|nuORF;ENST00000450256.1_2_2:70524423-70528566:-|nuORF;ENST00000460307.1_1_2:70524423-70528160:-|nuORF;nc|ENSG00000035141|Q96C01|FAM136A;ENSG00000035141|ENST00000430566|FAM136A ENST00000498665.1_1_2:70527944-70529143:-|nuORF ENST00000498665.1_1_2:70527944-70529143:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7716064453125 2 455.77146 909.528367 0.57444 0.00026181 -0.12974 -5.9132E-05 0.4447 0.00020268 455.77120873490503 49.121 0.17234 49.121 49.042 49.215 0 12 7 2 0 0 0 0.2001 1 27044 27044 23.148 6.2061 1 1779500 71804 612 47997 49040 83570 83570 0.06998375277123614 VPLARCVLP 9 Unmodified _VPLARCVLP_ 0 0 0 REV__ENST00000377047.8_1_13:95056729-95057002:+|nuORF REV__ENST00000377047.8_1_13:95056729-95057002:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.2940368652344 2 484.291505 966.568457 NaN NaN NaN NaN NaN NaN NaN 22.55 1 19.772 19.272 20.272 -2.7784 0 0 0 0.57317 1 12133 12133 13.508 0.97634 1 + 71805 26238 47998 49041 83571 83571 0.08383598676061865 VPLDDGSWKYP 11 Unmodified _VPLDDGSWKYP_ 0 0 0 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 ENSG00000179532|ENST00000254579|DNHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2117614746094 3 426.211794 1275.61355 0.36389 0.00015509 -0.06275 -2.6745E-05 0.30114 0.00012835 426.2117295048854 53.216 0.25315 52.764 52.647 52.9 -0.45173 22 12 2 0 0 0 0.62014 1 28794 28794 10.315 5.0184 1 4098200 71806 8841 47999 49042 83572 83572 -0.013229240477130588 VPLDEKLLPQL 11 Unmodified _VPLDEKLLPQL_ 0 0 0 ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB ENSG00000113273|ENST00000264914|ARSB ENSG00000113273|ENST00000264914|ARSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.8812255859375 2 632.879196 1263.74384 -0.17731 -0.00011222 1.0108 0.0006397 0.83346 0.00052748 632.8798290875586 76.399 0.25088 75.92 75.74 75.99 -0.47945 15 10 2 0 0 0 0.53952 1 41802 41802 14.405 5.9611 1 1300500 71807 2953 48000 49043 83573 83573 0.12251671951298704 VPLDEKLLPQL 11 Unmodified _VPLDEKLLPQL_ 0 0 0 ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB ENSG00000113273|ENST00000264914|ARSB ENSG00000113273|ENST00000264914|ARSB MSMS AL20221201_MKP_PDAC_01 4 632.8812866210938 2 632.879196 1263.74384 NaN NaN NaN NaN NaN NaN NaN 90.484 1 84.309 83.809 84.809 -6.1757 0 0 0 0.17693 1 59772 59772 40.725 14.457 1 71808 2953 48000 49043 83574 83574 0.12251671951298704 VPLDERIVF 9 Unmodified _VPLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3109130859375 2 544.310949 1086.60735 0.2152 0.00011713 -1.1267 -0.00061326 -0.91147 -0.00049612 544.3102314397416 65.81 0.99887 65.81 65.447 66.446 0 169 46 6 0 0 0 0.033587 5 36872 36572;36671;36773;36872;36984 53.404 30.668 1 640340000 71809 4865 48001 49044 83575;83576;83577;83578;83579 83578 0.06750602511442594 VPLDERIVF 9 Unmodified _VPLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3112182617188 2 544.310949 1086.60735 -0.11373 -6.1904E-05 -0.64029 -0.00034852 -0.75402 -0.00041042 544.3104182404076 66.19 1.1342 65.707 65.456 66.59 -0.48323 182 56 6 0 0 0 0.047788 4 36353 36039;36138;36244;36353 45.7 29.852 1 1147200000 71810 4865 48001 49044 83580;83581;83582;83583 83583 0.06750602511442594 VPLDERIVF 9 Unmodified _VPLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3117065429688 2 544.310949 1086.60735 0.85024 0.00046279 0.73318 0.00039908 1.5834 0.00086187 544.3116112387687 65.748 0.55656 65.758 65.507 66.064 0.0095596 88 27 4 0 0 0 0.040683 2 35970 35970;36071 49.554 29.101 1 72348000 71811 4865 48001 49044 83584;83585 83584 0.06750602511442594 VPLDERIVF 9 Unmodified _VPLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3113403320312 2 544.310949 1086.60735 1.0154 0.00055269 0.84287 0.00045878 1.8583 0.0010115 544.311070605673 71.07 1.3904 64.894 64.374 65.764 -6.1757 244 72 5 0 0 0 0.033587 6 46609 46264;46377;46489;46609;46738;46863 53.404 26.261 1 1017299999.9999999 71812 4865 48001 49044 83586;83587;83588;83589;83590;83591 83589 0.06750602511442594 VPLDERIVF 9 Unmodified _VPLDERIVF_ 0 0 0 nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENSG00000136830|ENST00000373312|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 nc|ENSG00000136830|Q96TA1-2|NIBAN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3114013671875 2 544.310949 1086.60735 0.75203 0.00040934 0.69994 0.00038099 1.452 0.00079032 544.3109893381626 72.971 2.7596 66.795 65.714 68.473 -6.1757 469 141 5 0 0 0 0.044296 14 47660 47190;47303;47423;47541;47660;47774;47893;48011;48125;48239;48358;48470;48596;48730 47.594 28.155 1 872300000 71813 4865 48001 49044 83592;83593;83594;83595;83596;83597;83598;83599;83600;83601;83602;83603;83604;83605 83596 0.06750602511442594 VPLDIKRAY 9 Unmodified _VPLDIKRAY_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671;ENST00000461374.1_1_22:25437297-25445586:+|nuORF;ENST00000494730.2_1_22:25436553-25570783:+|nuORF ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.8818359375 3 358.88172 1073.62333 -0.35226 -0.00012642 1.1093 0.0003981 0.75702 0.00027168 359.21659944797494 36.872 0.28252 36.622 36.49 36.773 -0.2497 21 12 2 0 0 0 0.42 1 19399 19399 11.518 0.71837 1 3094000 71814 9905 48002 49045 83606 83606 0.08946308748318188 VPLDIKRAY 9 Unmodified _VPLDIKRAY_ 0 0 0 ENSG00000197077|ENST00000358431|KIAA1671;ENST00000461374.1_1_22:25437297-25445586:+|nuORF;ENST00000494730.2_1_22:25436553-25570783:+|nuORF ENSG00000197077|ENST00000358431|KIAA1671 ENSG00000197077|ENST00000358431|KIAA1671 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8831481933594 3 358.88172 1073.62333 1.0602 0.00038049 0.80973 0.0002906 1.8699 0.00067109 358.8819563187128 41.285 0.27494 36.678 36.513 36.788 -4.6079 33 16 3 0 0 0 0.42 1 24712 24712 11.518 0.71837 1 22744000 71815 9905 48002 49045 83607 83607 0.08946308748318188 VPLDRSGHTGS 11 Unmodified _VPLDRSGHTGS_ 0 0 0 REV__nc|ENSG00000159788|O14924-2|RGS12 REV__nc|ENSG00000159788|O14924-2|RGS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8584899902344 3 375.859755 1124.55744 NaN NaN NaN NaN NaN NaN NaN 66.212 1 65.729 65.229 66.229 -0.48323 0 0 0 0.52067 1 36151 36151 23.964 6.101 1 + 71816 21500 48003 49046 83608 83608 0.00013867835468772682 VPLDWKSFI 9 Unmodified _VPLDWKSFI_ 0 0 0 REV__ENSG00000132874|ENST00000255226|SLC14A2 REV__ENSG00000132874|ENST00000255226|SLC14A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8082885742188 2 552.808042 1103.60153 0.64845 0.00035847 0.3116 0.00017225 0.96004 0.00053072 552.8082032071122 84.358 0.33465 83.858 83.621 83.955 -0.49961 33 14 3 0 0 0 0.28047 1 46127 46127 18.135 6.6403 1 1278300 + 71817 19888 48004 49047 83609 83609 0.05387503999759247 VPLEEAAQEY 10 Unmodified _VPLEEAAQEY_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7771606445312 2 574.777136 1147.53972 1.0085 0.00057968 -0.82117 -0.00047199 0.18736 0.00010769 574.776693809683 46.119 0.43039 46.119 45.882 46.313 0 79 20 5 0 0 0 0.085354 2 25204 25102;25204 49.933 31.787 1 87834000 71818 4371 48005 49048 83610;83611 83611 -0.02814892210039943 VPLEEAAQEY 10 Unmodified _VPLEEAAQEY_ 0 0 0 nc|ENSG00000132109|P19474-2|TRIM21;ENSG00000132109|ENST00000254436|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 nc|ENSG00000132109|P19474-2|TRIM21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.775634765625 2 574.777136 1147.53972 1.2511 0.0007191 -2.0189 -0.0011604 -0.76778 -0.0004413 574.7752746964802 53.682 0.5771 47.878 47.659 48.236 -5.8042 84 35 4 0 0 0 0.085354 2 33876 33876;34003 49.933 32.91 1 149280000 71819 4371 48005 49048 83612;83613 83612 -0.02814892210039943 VPLEEVVQEY 10 Unmodified _VPLEEVVQEY_ 0 0 0 ENST00000515834.1_1_5:180651698-180652007:+|nuORF;nc|ENSG00000146063|Q8WV44-4|TRIM41;ENST00000508930.1_1_5:180650987-180660460:+|nuORF;nc|ENSG00000146063|Q8WV44-2|TRIM41;ENSG00000146063|ENST00000315073|TRIM41 ENST00000515834.1_1_5:180651698-180652007:+|nuORF ENST00000515834.1_1_5:180651698-180652007:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.8094482421875 2 602.808436 1203.60232 -0.1747 -0.00010531 1.2322 0.0007428 1.0575 0.00063749 602.8091711706564 65.46 0.50129 65.46 65.194 65.695 0 57 19 4 0 0 0 0.0575 2 36485 36485;36582 56.177 31.787 1 8086200 71820 5749 48006 49049 83614;83615 83614 0.008662538581802437 VPLEIMIKF 9 Oxidation (M) _VPLEIM(Oxidation (M))IKF_ VPLEIM(1)IKF VPLEIM(120)IKF 0 0 1 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.6175537109375 2 553.319928 1104.6253 0.24034 0.00013299 0.098813 5.4675E-05 0.33916 0.00018766 553.3199461648414 79.834 0.64394 79.892 79.526 80.17 0.057579 107 25 6 0 0 0 0.0047067 4 44109 44019;44109;44117;44225 118.07 59.39 1 302290000 71821 5046 48007 49050 83616;83617;83618;83619 83617 922 0.07717601441913757 VPLEIMIKF 9 Oxidation (M) _VPLEIM(Oxidation (M))IKF_ VPLEIM(1)IKF VPLEIM(46)IKF 0 0 1 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3212280273438 2 553.319928 1104.6253 0.92643 0.00051261 0.76102 0.00042109 1.6874 0.0009337 553.3201756770342 80.889 0.60856 80.947 80.733 81.341 0.057587 33 23 2 0 0 0 0.047788 1 44797 44797 45.7 17.213 1 1517500 71822 5046 48007 49050 83620 83620 922 0.07717601441913757 VPLEIMIKF 9 Oxidation (M) _VPLEIM(Oxidation (M))IKF_ VPLEIM(1)IKF VPLEIM(100)IKF 0 0 1 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3175659179688 2 553.319928 1104.6253 1.125 0.00062251 -0.39359 -0.00021778 0.73145 0.00040472 553.3196962531218 94.006 0.71719 87.83 87.451 88.168 -6.1757 156 41 5 0 0 0 0.0087873 3 62070 62070;62198;62321 103.35 55.008 1 518230000 71823 5046 48007 49050 83621;83622;83623 83621 922 0.07717601441913757 VPLEIMIKF 9 Unmodified _VPLEIMIKF_ 0 0 0 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.322509765625 2 545.322471 1088.63039 0.0063309 3.4524E-06 0.34296 0.00018702 0.34929 0.00019048 545.3228536151398 87.906 0.32266 87.959 87.796 88.118 0.053345 38 13 4 0 0 0 0.0094097 2 48859 48859;48976 82.529 42.572 1 99682000 71824 5046 48007 49051 83624;83625 83624 0.08961905304522588 VPLEIMIKF 9 Unmodified _VPLEIMIKF_ 0 0 0 ENST00000461708.1_1_2:170655414-170662397:+|nuORF;ENSG00000138385|ENST00000260956|SSB ENST00000461708.1_1_2:170655414-170662397:+|nuORF ENST00000461708.1_1_2:170655414-170662397:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3215942382812 2 545.322471 1088.63039 -0.1596 -8.7034E-05 0.26002 0.0001418 0.10042 5.4761E-05 545.322840744174 98.885 0.22211 92.709 92.602 92.824 -6.1757 52 16 4 0 0 0 0.0087873 1 65625 65625 103.35 57.333 1 2667300000 71825 5046 48007 49051 83626 83626 0.08961905304522588 VPLEKQIWY 9 Unmodified _VPLEKQIWY_ 0 0 0 ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.3269653320312 2 588.326599 1174.63865 0.2451 0.0001442 0.067602 3.9772E-05 0.3127 0.00018397 588.8279543733246 58.157 0.32778 57.668 57.513 57.84 -0.48974 36 15 3 0 0 0 0.094905 1 31587 31587 43.772 32.278 1 4937100 71826 2491 48008 49052 83627 83627 0.05831175545517908 VPLEKQIWY 9 Unmodified _VPLEKQIWY_ 0 0 0 ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3272094726562 2 588.326599 1174.63865 0.89964 0.00052928 3.3704 0.0019829 4.27 0.0025122 588.3269351572881 57.841 0.27682 57.775 57.614 57.89 -0.066036 32 13 4 0 0 0 0.171 1 31470 31470 27.629 15.388 1 1664600 71827 2491 48008 49052 83628 83628 0.05831175545517908 VPLEKQIWY 9 Unmodified _VPLEKQIWY_ 0 0 0 ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB ENSG00000107338|ENST00000377707|SHB MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.3273315429688 2 588.326599 1174.63865 0.95974 0.00056464 -0.30824 -0.00018134 0.6515 0.0003833 588.3265242816436 63.655 0.55468 57.48 57.197 57.752 -6.1757 59 31 3 0 0 0 0.065007 1 41126 41126 51.415 38.884 1 23632000 71828 2491 48008 49052 83629 83629 0.05831175545517908 VPLENLVPI 9 Unmodified _VPLENLVPI_ 0 0 0 REV__ENST00000368854.7_1_10:125528237-125699754:-|nuORF REV__ENST00000368854.7_1_10:125528237-125699754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.3028564453125 2 497.302593 992.590633 0.6423 0.00031942 0.48127 0.00023934 1.1236 0.00055876 497.302816724987 82.054 0.35629 81.559 81.342 81.698 -0.4952 30 13 3 0 0 0 0.12841 1 44896 44896 30.225 1.738 1 1329900 + 71829 19318 48009 49053 83630 83630 0.09404101625477779 VPLENLVPI 9 Unmodified _VPLENLVPI_ 0 0 0 REV__ENST00000368854.7_1_10:125528237-125699754:-|nuORF REV__ENST00000368854.7_1_10:125528237-125699754:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.3027648925781 2 497.302593 992.590633 NaN NaN NaN NaN NaN NaN NaN 89.631 1 83.456 82.956 83.956 -6.1757 0 0 0 0.043758 1 59175 59175 60.39 9.5345 1 + 71830 19318 48009 49053 83631 83631 0.09404101625477779 VPLEQERAL 9 Unmodified _VPLEQERAL_ 0 0 0 ENST00000587774.1_1_17:73872720-73874251:-|nuORF;ENSG00000132481|ENST00000254816|TRIM47 ENST00000587774.1_1_17:73872720-73874251:-|nuORF ENST00000587774.1_1_17:73872720-73874251:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7968139648438 2 527.798206 1053.58186 0.56927 0.00030046 -1.7276 -0.00091184 -1.1584 -0.00061138 527.7967471595011 36.105 0.13788 36.105 36.01 36.148 0 8 6 2 0 0 0 0.1685 1 19148 19148 26.268 9.1552 1 3126000 71831 4414 48010 49054 83632 83632 0.057211279889770594 VPLEQHPDY 9 Unmodified _VPLEQHPDY_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2677001953125 2 549.266739 1096.51892 0.26181 0.0001438 1.4413 0.00079164 1.7031 0.00093545 549.2669802852945 31.566 0.17822 31.566 31.441 31.619 0 13 8 2 0 0 0 0.20428 1 16412 16412 22.736 7.898 1 1287800 71832 16088;13807 48011 49055 83633 83633 -0.025474377990576613 VPLEQSPVL 9 Unmodified _VPLEQSPVL_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 981.5620727539062 1 981.561524 980.554247 0.26072 0.00025591 -0.43131 -0.00042336 -0.17059 -0.00016745 981.5609317916183 58.049 0.23966 58.049 57.891 58.131 0 14 9 2 0 0 0 0.044011 1 32308 32308 47.749 9.7747 1 943340 71833 7844 48012 49056 83634 83634 0.06319224728747486 VPLEQSPVL 9 Unmodified _VPLEQSPVL_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2846069335938 2 491.2844 980.554247 0.35738 0.00017558 0.32458 0.00015946 0.68196 0.00033504 491.2845156959114 58.048 0.4729 58.048 57.817 58.29 0 57 18 4 0 0 0 0.039985 1 32342 32342 49.933 9.9757 1 20380000 71834 7844 48012 49056 83635 83635 0.06319224728747486 VPLEQSPVL 9 Unmodified _VPLEQSPVL_ 0 0 0 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 ENSG00000169188|ENST00000374987|APEX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2851867675781 2 491.2844 980.554247 0.78053 0.00038346 0.0076047 3.7361E-06 0.78814 0.0003872 491.2844509302682 66.075 0.53922 59.899 59.674 60.214 -6.1757 71 30 3 0 0 0 0.015445 2 42832 42832;42973 68.081 13.307 1 45304000 71835 7844 48012 49056 83636;83637 83636 0.06319224728747486 VPLEQVEAL 9 Unmodified _VPLEQVEAL_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2819213867188 2 499.281857 996.549162 0.26747 0.00013354 -0.075022 -3.7457E-05 0.19245 9.6085E-05 499.2818681296898 61.756 0.35685 61.756 61.572 61.929 0 47 15 4 0 0 0 0.010818 2 34375 34375;34476 78.149 18.721 1 10695000 71836 4978 48013 49057 83638;83639 83638 0.05074920866127286 VPLEQVEAL 9 Unmodified _VPLEQVEAL_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.28271484375 2 499.281857 996.549162 0.92742 0.00046304 -0.78319 -0.00039103 0.14423 7.201E-05 499.2818930434413 69.4 0.31921 63.225 63.058 63.377 -6.1757 19 16 2 0 0 0 0.0082661 1 45342 45342 92.491 21.358 1 23268000 71837 4978 48013 49057 83640 83640 0.05074920866127286 VPLERGCLA 9 Unmodified _VPLERGCLA_ 0 0 0 REV__ENSG00000010322|ENST00000345716|NISCH REV__ENSG00000010322|ENST00000345716|NISCH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.7286071777344 2 479.262945 956.511337 0.19766 9.4731E-05 -0.82419 -0.00039501 -0.62654 -0.00030028 479.26253194999646 31.741 0.26691 31.612 31.526 31.793 -0.12915 13 10 2 0 0 0 0.21242 1 16475 16475 5.2307 0 1 695570 + 71838 17046 48014 49058 83641 83641 0.031341313996676945 VPLERKKRE 9 Unmodified _VPLERKKRE_ 0 0 0 nc|ENSG00000122566|P22626|HNRNPA2B1 nc|ENSG00000122566|P22626|HNRNPA2B1 nc|ENSG00000122566|P22626|HNRNPA2B1 MSMS AL20221201_MKP_PDAC_01 4 577.8567504882812 2 577.853847 1153.69314 NaN NaN NaN NaN NaN NaN NaN 108.3 1 102.12 101.62 102.62 -6.1757 0 0 0 0.86054 1 72386 72386 0.45834 0 1 71839 16163 48015 49059 83642 83642 0.12244187416922614 VPLFGHYSA 9 Unmodified _VPLFGHYSA_ 0 0 0 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7562255859375 2 495.75581 989.497067 0.15681 7.7737E-05 -1.4197 -0.00070383 -1.2629 -0.00062609 495.7555812904094 24.01 0.49444 24.008 23.843 24.338 -0.0016766 37 25 2 0 0 0 0.12841 1 12227 12227 30.225 0 1 4999400 + 71840 17772 48016 49060 83643 83643 0.0018980224303959403 VPLGDVRPQE 10 Unmodified _VPLGDVRPQE_ 0 0 0 REV__ENSG00000283288|ENST00000637503|SMIM33 REV__ENSG00000283288|ENST00000637503|SMIM33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.3026733398438 2 555.301113 1108.58767 NaN NaN NaN NaN NaN NaN NaN 65.846 1 65.846 65.346 66.346 0 0 0 0 0.61997 1 36725 36725 20.415 1.0526 1 + 71841 24689 48017 49061 83644 83644 0.037722265006550515 VPLGGQQVPL 10 Unmodified _VPLGGQQVPL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35 nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2977294921875 2 504.297842 1006.58113 -0.36996 -0.00018657 0.20545 0.00010361 -0.1645 -8.2959E-05 504.2979378444148 60.211 0.53658 59.721 59.411 59.948 -0.49079 89 26 4 0 0 0 0.092434 2 32747 32747;32851 48.346 19.264 1 92982000 71842 972 48018 49062 83645;83646 83645 0.0781033333993264 VPLGGQQVPL 10 Unmodified _VPLGGQQVPL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35 nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2969360351562 2 504.297842 1006.58113 0.36612 0.00018463 -0.43171 -0.00021771 -0.065591 -3.3078E-05 504.297464596901 59.863 0.38176 59.81 59.595 59.977 -0.053062 40 18 3 0 0 0 0.081241 1 32674 32674 50.855 16.753 1 5545800 71843 972 48018 49062 83647 83647 0.0781033333993264 VPLGGQQVPL 10 Unmodified _VPLGGQQVPL_ 0 0 0 nc|ENSG00000068079|P80217-2|IFI35;ENSG00000068079|ENST00000415816|IFI35 nc|ENSG00000068079|P80217-2|IFI35 nc|ENSG00000068079|P80217-2|IFI35 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2984619140625 2 504.297842 1006.58113 0.76927 0.00038794 -0.017416 -8.7831E-06 0.75186 0.00037916 504.2978143805537 67.343 0.6733 61.167 60.857 61.531 -6.1757 119 37 4 0 0 0 0.045724 3 43867 43744;43867;43992 60.39 28.084 1 364480000 71844 972 48018 49062 83648;83649;83650 83649 0.0781033333993264 VPLGGRRG 8 Unmodified _VPLGGRRG_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;ENST00000309900.11_1_16:70928350-70955090:-|nuORF ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2478637695312 2 406.248486 810.48242 0.095443 3.8774E-05 -0.0753 -3.0591E-05 0.020143 8.1831E-06 406.24833431583295 79.185 0.9113 79.24 78.809 79.72 0.054977 44 35 2 0 0 0 0.80044 1 43824 43824 6.3541 0 1 5406200 71845 6517 48019 49063 83651 83651 0.06959774885558545 VPLGGRRG 8 Unmodified _VPLGGRRG_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;ENST00000309900.11_1_16:70928350-70955090:-|nuORF ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 406.248486 810.48242 0.88395 0.0003591 -0.35515 -0.00014428 0.5288 0.00021483 406.24825193645137 79.477 0.553 78.988 78.682 79.235 -0.48932 -0.12622 -0.00012243 NaN 6.3541 52 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2416000 71846 6517 48019 49063 0.06959774885558545 VPLGLPGNITF 11 Unmodified _VPLGLPGNITF_ 0 0 0 nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3 nc|ENSG00000172845|Q02447-5|SP3 nc|ENSG00000172845|Q02447-5|SP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3274536132812 2 564.326599 1126.63865 2.0871 0.0011778 -0.46171 -0.00026056 1.6254 0.00091728 564.3263149878603 92.942 0.43987 92.965 92.747 93.187 0.02298 30 17 2 0 0 0 0.018566 1 51690 51690 58.679 31.795 1 2431900 71847 8263 48020 49064 83652 83652 0.08039175545513899 VPLGLPGNITF 11 Unmodified _VPLGLPGNITF_ 0 0 0 nc|ENSG00000172845|Q02447-5|SP3;nc|ENSG00000172845|Q02447-6|SP3;nc|ENSG00000172845|Q02447-2|SP3;ENSG00000172845|ENST00000310015|SP3 nc|ENSG00000172845|Q02447-5|SP3 nc|ENSG00000172845|Q02447-5|SP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.3240966796875 2 564.326599 1126.63865 0.66805 0.000377 -1.0716 -0.00060472 -0.40354 -0.00022773 564.3255692123996 99.657 0.1862 93.481 93.354 93.541 -6.1757 25 11 3 0 0 0 0.0011251 1 66420 66420 81.89 35.869 1 25508000 71848 8263 48020 49064 83653 83653 0.08039175545513899 VPLGPDSTR 9 Unmodified _VPLGPDSTR_ 0 0 0 ENSG00000123933|ENST00000337190|MXD4;ENST00000513372.5_1_4:2252273-2254467:-|nuORF ENSG00000123933|ENST00000337190|MXD4 ENSG00000123933|ENST00000337190|MXD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.2331848144531 2 471.256174 940.497795 0.52278 0.00024636 -2.3898 -0.0011262 -1.8671 -0.00087986 471.2550731887227 67.405 0.11808 66.923 66.866 66.985 -0.48218 5 4 2 0 0 0 0.20727 1 36821 36821 7.9102 0 1 242090 71849 3736 48021 49065 83654 83654 0.025165968920873638 VPLGPGWPVEP 11 Unmodified _VPLGPGWPVEP_ 0 0 0 REV__ENST00000458180.1_1_3:195635405-195635600:+|nuORF REV__ENST00000458180.1_1_3:195635405-195635600:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.8108520507812 2 574.310949 1146.60735 0.72829 0.00041826 -0.69026 -0.00039643 0.038021 2.1836E-05 574.8114359830614 56.637 0.53871 50.66 50.304 50.843 -5.9769 94 30 4 0 0 0 0.53099 1 36041 36041 14.838 0 1 114450000 + 71850 27275 48022 49066 83655 83655 0.03990602511407815 VPLGPHRLL 9 Unmodified _VPLGPHRLL_ 0 0 0 ENSG00000148288|ENST00000372040|GBGT1;nc|ENSG00000148288|Q8N5D6-3|GBGT1 ENSG00000148288|ENST00000372040|GBGT1 ENSG00000148288|ENST00000372040|GBGT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7784729003906 2 501.316369 1000.61818 -0.85973 -0.000431 -3.8075 -0.0019088 -4.6672 -0.0023398 501.31343768602613 56.069 0.37257 55.584 55.432 55.805 -0.48554 33 18 3 0 0 0 0.18941 1 30558 30558 14.582 3.4672 1 6401200 71851 5910 48023 49067 83656 83656 0.11790049676358194 VPLGRRLHQ 9 Unmodified _VPLGRRLHQ_ 0 0 0 REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MSMS AL20221201_MKP_PDAC_01 4 538.3274536132812 2 538.327799 1074.64105 NaN NaN NaN NaN NaN NaN NaN 99.899 1 93.723 93.223 94.223 -6.1757 0 0 0 0.82015 1 66671 66671 5.2307 3.3864 1 + 71852 21139 48024 49068 83657 83657 0.10671068793840277 VPLGVDRLVM 10 Oxidation (M) _VPLGVDRLVM(Oxidation (M))_ VPLGVDRLVM(1) VPLGVDRLVM(62) 0 0 1 ENSG00000151715|ENST00000281441|TMEM45B;ENST00000527754.1_1_11:129698120-129727360:+|nuORF ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.8180541992188 2 557.818084 1113.62162 0.67832 0.00037838 -1.0067 -0.00056154 -0.32835 -0.00018316 557.8175099521467 53.704 0.41929 53.253 52.963 53.383 -0.45173 38 20 2 0 0 0 0.043225 1 29089 29089 61.602 29.296 1 9511700 71853 6141 48025 49069 83658 83658 1096 0.06934931668070021 VPLGVDRLVM 10 Oxidation (M) _VPLGVDRLVM(Oxidation (M))_ VPLGVDRLVM(1) VPLGVDRLVM(46) 0 0 1 ENSG00000151715|ENST00000281441|TMEM45B;ENST00000527754.1_1_11:129698120-129727360:+|nuORF ENSG00000151715|ENST00000281441|TMEM45B ENSG00000151715|ENST00000281441|TMEM45B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.31982421875 2 557.818084 1113.62162 0.22753 0.00012692 -0.47504 -0.00026499 -0.24751 -0.00013807 557.8180891321629 53.375 0.24481 53.311 53.136 53.381 -0.063423 27 11 3 0 0 0 0.10406 1 28920 28920 45.74 26.483 1 3603600 71854 6141 48025 49069 83659 83659 1096 0.06934931668070021 VPLHNACSY 9 Carbamidomethyl (C) _VPLHNAC(Carbamidomethyl (C))SY_ VPLHNAC(1)SY VPLHNAC(96)SY 0 1 0 ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS;ENSG00000107854|ENST00000371627|TNKS2 ENSG00000173273|ENST00000310430|TNKS MSMS AL20221201_MKP_PDAC_01 4 530.7479858398438 2 530.747659 1059.48076 NaN NaN NaN NaN NaN NaN NaN 28.736 1 25.588 25.088 26.088 -3.1482 0 0 0 0.0084204 1 16057 16057 96.111 51.704 1 71855 8309;2522 48026 49070 83660 83660 255 -0.04659646985373911 VPLHPGAP 8 Unmodified _VPLHPGAP_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2265625 2 394.226688 786.438824 -0.36982 -0.00014579 1.1847 0.00046704 0.81488 0.00032125 394.22701007001746 48.848 0.21581 48.848 48.736 48.952 0 12 9 2 0 0 0 0.70131 1 26853 26853 17.087 0 1 1857500 + 71856 24027 48027 49071 83661 83661 0.03706165388427962 VPLHPGAP 8 Unmodified _VPLHPGAP_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.2263793945312 2 394.226688 786.438824 0.50071 0.00019739 0.70607 0.00027835 1.2068 0.00047575 394.2269700140252 49.209 0.20902 48.838 48.673 48.882 -0.37172 17 9 2 0 0 0 0.70131 1 26425 26425 17.087 0 1 1682700 + 71857 24027 48027 49071 83662 83662 0.03706165388427962 VPLHPGAP 8 Unmodified _VPLHPGAP_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 394.226688 786.438824 -0.36982 -0.00014579 1.1847 0.00046704 0.81488 0.00032125 394.22701007001746 48.848 0.21581 48.848 48.736 48.952 0 0.0050142 0.00029983 NaN 17.087 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1857500 + 71858 24027 48027 49071 0.03706165388427962 VPLHPGAP 8 Unmodified _VPLHPGAP_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 394.226688 786.438824 0.50071 0.00019739 0.70607 0.00027835 1.2068 0.00047575 394.2269700140252 49.209 0.20902 48.838 48.673 48.882 -0.37172 -0.0050142 -7.7542E-05 NaN 17.087 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1682700 + 71859 24027 48027 49071 0.03706165388427962 VPLIKLKIELI 11 Unmodified _VPLIKLKIELI_ 0 0 0 REV__ENSG00000111666|ENST00000229266|CHPT1 REV__ENSG00000111666|ENST00000229266|CHPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1281.229370117188 1 1278.87592 1277.86865 0.74512 0.00095291 1.2323 0.001576 1.9775 0.0025289 1279.8785246142436 54.853 0.078667 54.785 54.745 54.823 -0.067924 7 3 3 0 0 0 0.7453 1 29789 29789 0 0 1 1352900 + 71860 18763 48028 49072 83663 83663 0.24082589158479095 VPLILGMIL 9 Unmodified _VPLILGMIL_ 0 0 0 REV__ENST00000504531.2_1_8:76136172-76136379:-|nuORF REV__ENST00000504531.2_1_8:76136172-76136379:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.815673828125 2 484.814282 967.614011 0.96142 0.00046611 0.062817 3.0455E-05 1.0242 0.00049656 484.8148972820483 102.21 0.15462 96.037 95.978 96.132 -6.1757 11 6 3 0 0 0 0.3554 1 68619 68619 14.582 0 1 6018300 + 71861 28057 48029 49073 83664 83664 0.12890824138446533 VPLIPAFIDY 10 Unmodified _VPLIPAFIDY_ 0 0 0 REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF REV__ENST00000534591.1_1_11:64876790-64877821:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.217041015625 3 383.218109 1146.6325 NaN NaN NaN NaN NaN NaN NaN 28.512 1 28.45 27.95 28.95 -0.062159 0 0 0 0.96627 1 14721 14721 2.086 0 1 + 71862 28503 48030 49074 83665 83665 0.06504657313985263 VPLITIPN 8 Unmodified _VPLITIPN_ 0 0 0 REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP REV__nc|ENSG00000080603|Q6ZRS2-3|SRCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7720336914062 2 433.770929 865.527304 0.32796 0.00014226 1.4398 0.00062454 1.7678 0.0007668 433.77172924938975 76.176 0.75272 76.224 75.968 76.72 0.047951 50 31 2 0 0 0 0.80992 1 42068 42068 0.69038 0 1 12093000 + 71863 17670 48031 49075 83666 83666 0.08916160908233906 VPLKALTG 8 Unmodified _VPLKALTG_ 0 0 0 nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4 nc|ENSG00000069020|O15021-2|MAST4 nc|ENSG00000069020|O15021-2|MAST4 MSMS AL20221201_MKP_PDAC_01 4 399.7578430175781 2 399.757821 797.501089 NaN NaN NaN NaN NaN NaN NaN 14.408 1 11.905 11.405 12.405 -2.5029 0 0 0 0.97444 1 7317 7317 0.79363 0 1 71864 996 48032 49076 83667 83667 0.09423891736742007 VPLKEKDL 8 Unmodified _VPLKEKDL_ 0 0 0 REV__ENSG00000085999|ENST00000371975|RAD54L REV__ENSG00000085999|ENST00000371975|RAD54L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2875366210938 2 471.286943 940.559333 0.5362 0.0002527 0.58479 0.0002756 1.121 0.00052831 471.28713390067537 61.072 0.41655 61.072 60.838 61.254 0 31 17 3 0 0 0 0.80624 1 34120 34120 2.8892 0 1 1452500 + 71865 17761 48033 49077 83668 83668 0.0866752859137705 VPLKENVKY 9 Unmodified _VPLKENVKY_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.8815612792969 3 363.881608 1088.623 -0.57759 -0.00021017 1.4472 0.00052661 0.86961 0.00031644 363.88209638370165 26.845 0.21087 26.845 26.719 26.93 0 23 9 3 0 0 0 0.13231 1 13796 13796 34.222 17.656 1 3522600 71866 315 48034 49078 83669 83669 0.08222889028479585 VPLKENVKY 9 Unmodified _VPLKENVKY_ 0 0 0 ENSG00000005810|ENST00000544440|MYCBP2;nc|ENSG00000005810|O75592-2|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 ENSG00000005810|ENST00000544440|MYCBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8824462890625 3 363.881608 1088.623 1.3479 0.00049049 0.45167 0.00016435 1.7996 0.00065484 363.88141899508196 30.129 0.44576 26.632 26.41 26.856 -3.497 41 21 3 0 0 0 0.13231 2 17045 16926;17045 28.234 16.059 1 32405000 71867 315 48034 49078 83670;83671 83671 0.08222889028479585 VPLKFWTSA 9 Unmodified _VPLKFWTSA_ 0 0 0 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 nc|ENSG00000242485|Q9BYC9-2|MRPL20 MSMS AL20221201_MKP_PDAC_01 4 350.1980285644531 3 350.199049 1047.57532 NaN NaN NaN NaN NaN NaN NaN 24.174 1 21.347 20.847 21.847 -2.8273 0 0 0 0.6306 1 13140 13140 7.609 0 1 71868 16572 48035 49079 83672 83672 0.05343234828296772 VPLKGIVSY 9 Unmodified _VPLKGIVSY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2967224121094 2 488.29731 974.580068 0.99494 0.00048583 -0.52218 -0.00025498 0.47276 0.00023085 488.2968823788263 50.27 0.21893 49.878 49.753 49.971 -0.3923 24 10 3 0 0 0 0.040683 1 27073 27073 49.554 24.88 1 4253400 71869 5013 48036 49080 83673 83673 0.0917611897103825 VPLKGIVSY 9 Unmodified _VPLKGIVSY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.2977600097656 2 488.29731 974.580068 1.4418 0.00070402 -0.52814 -0.00025789 0.91364 0.00044613 488.2969561548068 49.936 0.3037 49.887 49.723 50.027 -0.048824 41 14 4 0 0 0 0.012668 2 26973 26973;27075 72.968 42.743 1 12297000 71870 5013 48036 49080 83674;83675 83674 0.0917611897103825 VPLKGIVSY 9 Unmodified _VPLKGIVSY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2976379394531 2 488.29731 974.580068 0.57413 0.00028035 0.18393 8.9815E-05 0.75807 0.00037016 488.29733485036644 56.394 0.78627 50.417 49.881 50.668 -5.9769 117 45 4 0 0 0 0.017075 1 35678 35678 66.457 41.057 1 216830000 71871 5013 48036 49080 83676 83676 0.0917611897103825 VPLKGIVSY 9 Unmodified _VPLKGIVSY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 488.29731 974.580068 0.32588 0.00015912 -0.34991 -0.00017086 -0.024031 -1.1734E-05 488.29630643977663 50.212 0.1862 50.212 50.096 50.282 0 0.21965 0.0001676 NaN 72.968 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 542970 71872 5013 48036 49080 0.0917611897103825 VPLKQTSQV 9 Unmodified _VPLKQTSQV_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7454528808594 2 500.295299 998.576045 0.52611 0.00026321 -0.21924 -0.00010968 0.30687 0.00015353 500.2952005630962 46.68 0.29808 46.68 46.501 46.799 0 29 12 3 0 0 0 0.20727 1 25579 25579 7.9102 0 1 7792900 71873 10553 48037 49081 83677 83677 0.07670029477321805 VPLLAPLAL 9 Unmodified _VPLLAPLAL_ 0 0 0 REV__ENSG00000243509|ENST00000369996|TNFRSF6B REV__ENSG00000243509|ENST00000369996|TNFRSF6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.8049926757812 2 453.804771 905.59499 0.81967 0.00037197 0.019173 8.701E-06 0.83884 0.00038067 453.80471190186967 99.926 0.16431 93.75 93.691 93.855 -6.1757 27 11 3 0 0 0 0.085487 1 66686 66686 36.466 0 1 104140000 + 71874 24473 48038 49082 83678 83678 0.13841610839028817 VPLLAPLAL 9 Unmodified _VPLLAPLAL_ 0 0 0 REV__ENSG00000243509|ENST00000369996|TNFRSF6B REV__ENSG00000243509|ENST00000369996|TNFRSF6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 906.6015014648438 1 906.602266 905.59499 0.52306 0.00047421 0.35707 0.00032372 0.88013 0.00079793 906.6024215437814 99.933 0.12829 93.758 93.691 93.819 -6.1757 13 9 2 0 0 0 0.047696 1 66713 66713 45.75 0 1 38792000 + 71875 24473 48038 49082 83679 83679 0.13841610839028817 VPLLGGLLEH 10 Unmodified _VPLLGGLLEH_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.784423828125 2 524.313492 1046.61243 2.1324 0.001118 -1.8261 -0.00095744 0.3063 0.0001606 524.3130477769516 62.556 0.48942 56.38 56.21 56.7 -6.1757 39 24 2 0 0 0 0.23117 1 40326 40326 11.64 6.8843 1 11610000 71876 4088 48039 49083 83680 83680 0.09098906374038052 VPLLGGLLEH 10 Unmodified _VPLLGGLLEH_ 0 0 0 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 ENSG00000128731|ENST00000261609|HERC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.313492 1046.61243 0.13632 7.1472E-05 0.23697 0.00012425 0.37328 0.00019572 524.3135877953903 56.558 0.23892 56.489 56.36 56.598 -0.068737 0.05466 0.0011108 NaN 11.64 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3886300 71877 4088 48039 49083 0.09098906374038052 VPLLLINRLL 10 Unmodified _VPLLLINRLL_ 0 0 0 REV__ENST00000525872.1_1_11:75623027-75627198:+|nuORF REV__ENST00000525872.1_1_11:75623027-75627198:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3944702148438 2 582.397359 1162.78016 -0.10574 -6.1584E-05 -3.8325 -0.0022321 -3.9383 -0.0022936 582.3951436839968 103.61 0.14722 103.56 103.47 103.62 -0.047928 8 5 2 0 0 0 0.70951 1 57555 57555 1.8442 0 1 2863500 + 71878 28360 48040 49084 83681 83681 0.2052859363866446 VPLLLINRLL 10 Unmodified _VPLLLINRLL_ 0 0 0 REV__ENST00000525872.1_1_11:75623027-75627198:+|nuORF REV__ENST00000525872.1_1_11:75623027-75627198:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 582.397359 1162.78016 -0.10574 -6.1584E-05 -3.8325 -0.0022321 -3.9383 -0.0022936 582.3951436839968 103.61 0.14722 103.56 103.47 103.62 -0.047928 0 0 NaN 1.8442 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2863500 + 71879 28360 48040 49084 0.2052859363866446 VPLLLQGG 8 Unmodified _VPLLLQGG_ 0 0 0 ENST00000392564.5_1_17:73389792-73389933:-|nuORF ENST00000392564.5_1_17:73389792-73389933:-|nuORF ENST00000392564.5_1_17:73389792-73389933:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.7510375976562 2 398.749996 795.485439 -1.2034 -0.00047985 2.1685 0.00086467 0.96508 0.00038483 398.75158322608627 32.332 0.20908 32.332 32.184 32.393 0 18 10 2 0 0 0 0.80676 1 16900 16900 2.5775 0 1 3892600 71880 12676 48041 49085 83682 83682 0.07951605219716384 VPLLLQGG 8 Unmodified _VPLLLQGG_ 0 0 0 ENST00000392564.5_1_17:73389792-73389933:-|nuORF ENST00000392564.5_1_17:73389792-73389933:-|nuORF ENST00000392564.5_1_17:73389792-73389933:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 398.749996 795.485439 -0.31218 -0.00012448 2.8541 0.0011381 2.5419 0.0010136 398.7512048459854 32.322 0.30448 32.352 32.258 32.562 0.029747 0.0095312 4.6956E-05 NaN 2.5775 32 12 4 NaN NaN NaN NaN 0 NaN NaN 0 22364000 71881 12676 48041 49085 0.07951605219716384 VPLLPLAK 8 Unmodified _VPLLPLAK_ 0 0 0 nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 850.5758056640625 1 850.576052 849.568775 1.4494 0.0012328 -2.6984 -0.0022952 -1.249 -0.0010623 850.5738561384254 104.5 0.15041 98.321 98.267 98.417 -6.1757 15 11 2 0 0 0 0.81107 1 69978 69978 0 0 1 6004200 71882 1610 48042 49086 83683 83683 0.13797341667554974 VPLLPLAK 8 Unmodified _VPLLPLAK_ 0 0 0 nc|ENSG00000092200|Q96KN7-6|RPGRIP1;nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 nc|ENSG00000092200|Q96KN7-6|RPGRIP1 MSMS AL20221201_MKP_PDAC_01 4 425.7908325195312 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 14.055 1 11.552 11.052 12.052 -2.5029 0 0 0 0.97444 1 7124 7124 0 0 1 71883 1610 48042 49086 83684 83684 0.13797341667554974 VPLLRAISY 9 Unmodified _VPLLRAISY_ 0 0 0 ENST00000488222.5_1_7:45142883-45145249:-|nuORF;ENSG00000136270|ENST00000258770|TBRG4;ENST00000484326.1_1_7:45143607-45145060:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF ENST00000488222.5_1_7:45142883-45145249:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3161010742188 2 516.316035 1030.61752 0.43065 0.00022235 -0.68167 -0.00035196 -0.25103 -0.00012961 516.3158872597814 62.813 0.40661 62.791 62.602 63.008 -0.021614 48 20 3 0 0 0 0.0094097 1 34306 34306 82.529 30.261 1 7528900 71884 4809 48043 49087 83685 83685 0.10343210236646883 VPLLRTQL 8 Unmodified _VPLLRTQL_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.3022155761719 2 470.302927 938.591301 -0.35273 -0.00016589 0.13406 6.3048E-05 -0.21867 -0.00010284 470.30300655101473 53.522 0.11794 53.459 53.381 53.499 -0.063423 9 5 2 0 0 0 0.36356 1 29027 29027 48.346 8.3885 1 2437800 71885 9835 48044 49088 83686 83686 0.11954941065175717 VPLLSAWPVP 10 Unmodified _VPLLSAWPVP_ 0 0 0 REV__ENSG00000267221|ENST00000587304|C17orf113 REV__ENSG00000267221|ENST00000587304|C17orf113 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8186645507812 2 539.81841 1077.62227 0.17556 9.4771E-05 0.10903 5.8856E-05 0.28459 0.00015363 539.8184424213862 100.83 0.11238 100.7 100.63 100.74 -0.13293 10 3 4 0 0 0 0.65502 1 55054 55054 7.9102 7.9102 1 3974100 + 71886 24611 48045 49089 83687 83687 0.08656094379398382 VPLLSWGPSF 10 Unmodified _VPLLSWGPSF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2655639648438 2 551.800217 1101.58588 0.40104 0.00022129 1.3918 0.00076802 1.7929 0.00098932 551.8008165053099 59.42 0.2571 58.93 58.75 59.007 -0.49079 21 11 2 0 0 0 0.22811 1 32248 32248 10.074 0 1 1071700 71887 4072 48046 49090 83688 83688 0.03915217482699518 VPLMGRSN 8 Unmodified _VPLMGRSN_ 0 0 0 REV__ENSG00000197471|ENST00000652691|SPN REV__ENSG00000197471|ENST00000652691|SPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2365112304688 2 437.234187 872.453822 NaN NaN NaN NaN NaN NaN NaN 45.882 1 45.882 45.382 46.382 0 0 0 0 0.95607 1 25042 25042 9.3474 0 1 + 71888 23929 48047 49091 83689 83689 0.012492891941178641 VPLNSGVRF 9 Unmodified _VPLNSGVRF_ 0 0 0 ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI ENSG00000123609|ENST00000243346|NMI MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7826843261719 2 494.782359 987.550165 NaN NaN NaN NaN NaN NaN NaN 46.889 1 46.855 46.355 47.355 -0.033417 0 0 0 0.12343 1 25243 25243 39.95 13.608 1 71889 3722 48048 49092 83690 83690 0.05589180025708629 VPLPAGWEM 9 Oxidation (M) _VPLPAGWEM(Oxidation (M))_ VPLPAGWEM(1) VPLPAGWEM(47) 0 0 1 nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1 nc|ENSG00000137693|P46937-5|YAP1 nc|ENSG00000137693|P46937-5|YAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2491760253906 2 508.249503 1014.48445 -0.44605 -0.00022671 0.35371 0.00017977 -0.092341 -4.6932E-05 508.2502872840903 60.756 0.38438 60.267 60.05 60.435 -0.48932 38 18 3 0 0 0 0.045537 1 33038 33038 46.921 10.877 1 4534600 71890 4958 48049 49093 83691 83691 906 -0.022209772114933912 VPLPAGWEM 9 Unmodified _VPLPAGWEM_ 0 0 0 nc|ENSG00000137693|P46937-5|YAP1;nc|ENSG00000137693|P46937-3|YAP1;nc|ENSG00000137693|P46937-6|YAP1;nc|ENSG00000137693|P46937-7|YAP1;nc|ENSG00000137693|P46937-2|YAP1;nc|ENSG00000137693|P46937-8|YAP1;ENSG00000137693|ENST00000282441|YAP1;nc|ENSG00000137693|P46937-9|YAP1 nc|ENSG00000137693|P46937-5|YAP1 nc|ENSG00000137693|P46937-5|YAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2542724609375 2 500.252046 998.489538 0.72206 0.00036121 -0.53391 -0.00026709 0.18815 9.4124E-05 500.25159518482326 85.648 0.38483 79.472 79.361 79.746 -6.1757 34 21 2 0 0 0 0.095049 1 56405 56405 34.187 20.679 1 17614000 71891 4958 48049 49094 83692 83692 -0.009766733488845603 VPLPDIQEF 9 Unmodified _VPLPDIQEF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1;ENST00000500085.2_1_4:187509748-187518366:-|nuORF ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7835083007812 2 529.281857 1056.54916 0.8038 0.00042544 2.2098 0.0011696 3.0136 0.001595 529.2841472615422 80.548 0.34738 80.056 79.853 80.201 -0.49247 35 13 4 0 0 0 0.28047 1 44075 44075 18.135 9.5417 1 1289800 71892 1378 48050 49095 83693 83693 0.02314920866160719 VPLPETENY 9 Unmodified _VPLPETENY_ 0 0 0 nc|ENSG00000165194|Q8TAB3-3|PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19;ENSG00000165194|ENST00000373034|PCDH19 nc|ENSG00000165194|Q8TAB3-3|PCDH19 nc|ENSG00000165194|Q8TAB3-3|PCDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.260986328125 2 531.261122 1060.50769 0.28655 0.00015223 -0.45938 -0.00024405 -0.17283 -9.1819E-05 531.2608344171952 61.727 0.35941 61.727 61.548 61.907 0 33 15 3 0 0 0 0.46577 1 34493 34493 9.3474 0 1 3460500 71893 7307 48051 49096 83694 83694 -0.020142598931897737 VPLPFMMSF 9 Unmodified _VPLPFMMSF_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.766845703125 2 534.766474 1067.5184 0.69007 0.00036903 -3.9062 -0.0020889 -3.2161 -0.0017199 534.763139902923 57.001 0.1251 51.024 50.975 51.1 -5.9769 11 7 2 0 0 0 0.37804 1 36462 36462 13.508 1.8676 1 18769000 + 71894 17497 48052 49097 83695 83695 -0.012662720441085185 VPLPFMMSF 9 Unmodified _VPLPFMMSF_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.766474 1067.5184 0.68622 0.00036697 -8.5453 -0.0045698 -7.8591 -0.0042028 535.2636427575312 50.722 0.15837 50.668 50.589 50.747 -0.053871 -0.17781 -0.0013732 NaN 13.508 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 893330 + 71895 17497 48052 49097 -0.012662720441085185 VPLPFMMSF 9 Unmodified _VPLPFMMSF_ 0 0 0 REV__nc|ENSG00000071564|P15923-3|TCF3 REV__nc|ENSG00000071564|P15923-3|TCF3 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 534.766474 1067.5184 0.69007 0.00036903 -3.9062 -0.0020889 -3.2161 -0.0017199 534.763139902923 57.001 0.1251 51.024 50.975 51.1 -5.9769 0.17781 0.0035885 NaN 13.508 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 18769000 + 71896 17497 48052 49097 -0.012662720441085185 VPLPIAGEAP 10 Unmodified _VPLPIAGEAP_ 0 0 0 REV__nc|ENSG00000186868|P10636|MAPT REV__nc|ENSG00000186868|P10636|MAPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2776794433594 2 482.279118 962.543683 0.12636 6.0942E-05 -1.5855 -0.00076467 -1.4592 -0.00070373 482.2780179001014 61.55 0.23769 61.06 60.943 61.18 -0.48932 14 10 2 0 0 0 0.67033 1 33549 33549 6.2058 0 1 893360 + 71897 23605 48053 49098 83696 83696 0.06091242074319325 VPLPRLSLME 10 Unmodified _VPLPRLSLME_ 0 0 0 ENSG00000166819|ENST00000300055|PLIN1 ENSG00000166819|ENST00000300055|PLIN1 ENSG00000166819|ENST00000300055|PLIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8360595703125 2 577.833734 1153.65292 1.3889 0.00080255 0.33356 0.00019274 1.7225 0.0009953 577.8338869849139 70.847 0.34326 70.882 70.678 71.021 0.035515 45 15 4 0 0 0 0.45406 1 39052 39052 11.495 0 1 45693000 71898 7534 48054 49099 83697 83697 0.08223504702164064 VPLPYFEYF 9 Unmodified _VPLPYFEYF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8386840820312 2 587.794601 1173.57465 2.2573 0.0013268 -1.8147 -0.0010667 0.44261 0.00026016 588.2946893705711 100.11 0.11142 100.08 99.989 100.1 -0.036301 8 3 3 0 0 0 0.19298 1 55582 55582 13.508 0 1 2312500 71899 7082 48055 49100 83698 83698 -0.005196046114406272 VPLPYFEYF 9 Unmodified _VPLPYFEYF_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7947387695312 2 587.794601 1173.57465 1.2178 0.00071584 0.53278 0.00031316 1.7506 0.001029 587.7946856199734 101.08 0.1414 94.906 94.815 94.956 -6.1757 17 7 3 0 0 0 0.023761 1 67742 67742 59.795 23.751 1 73547000 71900 7082 48055 49100 83699 83699 -0.005196046114406272 VPLQCSFRF 9 Unmodified _VPLQCSFRF_ 0 0 0 ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENST00000537120.5_1_11:61091345-61100440:-|nuORF ENST00000537120.5_1_11:61091345-61100440:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 366.5495300292969 3 366.191788 1095.55354 NaN NaN NaN NaN NaN NaN NaN 44.23 1 39.378 38.878 39.878 -4.852 0 0 0 0.46757 1 26975 26975 11.495 2.2509 1 71901 14986 48056 49101 83700 83700 0.009581068080478872 VPLRALVL 8 Unmodified _VPLRALVL_ 0 0 0 ENST00000601508.1_1_2:220362457-220362814:-|nuORF ENST00000601508.1_1_2:220362457-220362814:-|nuORF ENST00000601508.1_1_2:220362457-220362814:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7990112304688 2 440.802563 879.590573 NaN NaN NaN NaN NaN NaN NaN 4.3972 1 4.3243 3.8243 4.8243 -0.072869 0 0 0 0.97444 1 2175 2175 0 0 1 71902 15807 48057 49102 83701 83701 0.14596146416113243 VPLREINQKY 10 Unmodified _VPLREINQKY_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.5754089355469 3 420.575067 1258.70337 -0.67264 -0.0002829 0.70182 0.00029517 0.029181 1.2273E-05 420.5754462253667 29.98 0.16928 29.98 29.867 30.036 0 19 7 4 0 0 0 0.44373 1 15544 15544 21.59 10.691 1 2219600 71903 732 48058 49103 83702 83702 0.08436750351506817 VPLREINQKY 10 Unmodified _VPLREINQKY_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.5752868652344 3 420.575067 1258.70337 0.65897 0.00027714 1.4574 0.00061293 2.1163 0.00089007 420.57564316771874 29.966 0.20488 29.886 29.77 29.975 -0.080431 23 7 4 0 0 0 0.18021 1 15523 15523 37.075 18.353 1 14345000 71904 732 48058 49103 83703 83703 0.08436750351506817 VPLREINQKY 10 Unmodified _VPLREINQKY_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.3605346679688 2 630.358962 1258.70337 0.41265 0.00026012 2.4848 0.0015663 2.8975 0.0018265 630.3604362378264 29.963 0.13285 29.883 29.815 29.948 -0.080429 7 4 2 0 0 0 0.70363 1 15560 15560 2.4985 1.0166 1 1034000 71905 732 48058 49103 83704 83704 0.08436750351506817 VPLREINQKY 10 Unmodified _VPLREINQKY_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.5753479003906 3 420.575067 1258.70337 1.5562 0.00065451 0.23971 0.00010081 1.7959 0.00075533 420.57495746219445 33.641 0.44278 29.655 29.451 29.894 -3.9853 61 24 3 0 0 0 0.42143 2 19245 19245;19360 19.626 5.0072 1 47559000 71906 732 48058 49103 83705;83706 83705 0.08436750351506817 VPLREINQKY 10 Unmodified _VPLREINQKY_ 0 0 0 ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ ENSG00000051341|ENST00000264233|POLQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8590698242188 2 630.358962 1258.70337 1.0702 0.00067458 -0.23287 -0.00014679 0.83729 0.00052779 630.3589799907514 33.585 0.31872 29.6 29.539 29.858 -3.9853 29 17 2 0 0 0 0.01173 1 19282 19282 84.522 48.016 1 6490400 71907 732 48058 49103 83707 83707 0.08436750351506817 VPLRHALKL 9 Unmodified _VPLRHALKL_ 0 0 0 REV__ENST00000313732.8_1_16:85009800-85009932:-|nuORF REV__ENST00000313732.8_1_16:85009800-85009932:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8457641601562 2 523.845294 1045.67603 1.6421 0.00086021 -0.90486 -0.00047401 0.73725 0.0003862 523.844894535889 106.31 0.98497 100.13 99.666 100.65 -6.1757 386 160 3 0 0 0 0.62242 1 71439 71439 0 0 1 11181000 + 71908 25443 48059 49104 83708 83708 0.1550231160176736 VPLRNKKTL 9 Unmodified _VPLRNKKTL_ 0 0 0 REV__ENST00000563005.5_1_16:55854223-55866983:-|nuORF REV__ENST00000563005.5_1_16:55854223-55866983:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.9011535644531 3 356.901114 1067.68151 -0.0082288 -2.9369E-06 -0.31334 -0.00011183 -0.32157 -0.00011477 356.90097538325807 18.779 0.17939 18.785 18.683 18.862 0.0060482 21 8 3 0 0 0 0.095405 1 9517 9517 24.991 0 1 10288000 + 71909 24078 48060 49105 83709 83709 0.1503799039360274 VPLRPARPW 9 Unmodified _VPLRPARPW_ 0 0 0 REV__ENST00000527224.1_1_11:65837982-65838258:+|nuORF REV__ENST00000527224.1_1_11:65837982-65838258:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.3285522460938 2 546.327268 1090.63998 1.1988 0.00065495 1.4259 0.00077901 2.6247 0.001434 546.328122798926 94.355 0.28855 88.179 87.993 88.282 -6.1757 49 16 4 0 0 0 0.41742 1 62526 62526 11.64 3.047 1 63057000 + 71910 28386 48061 49106 83710 83710 0.09828854424927158 VPLRYRSL 8 Unmodified _VPLRYRSL_ 0 0 0 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 REV__nc|ENSG00000198420|Q9Y4C2-2|TCAF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7745056152344 2 502.306001 1002.59745 0.75351 0.00037849 -0.73067 -0.00036702 0.022837 1.1471E-05 502.30541028211826 45.881 0.27155 45.881 45.722 45.994 0 17 13 2 0 0 0 8.7369 1 25026 25026 6.3541 0 1 8650500 + 71911 24020 48062 49107 83711 83711 0.09625459296705685 VPLSADDL 8 Unmodified _VPLSADDL_ 0 0 0 REV__ENST00000368989.6_2_10:124187820-124189451:+|nuORF REV__ENST00000368989.6_2_10:124187820-124189451:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.219482421875 2 415.218726 828.422899 NaN NaN NaN NaN NaN NaN NaN 54.833 1 54.833 54.333 55.333 0 0 0 0 0.97348 1 30451 30451 5.7604 0 1 + 71912 18570 48063 49108 83712 83712 0.0018241436084736051 VPLSEPVTM 9 Oxidation (M) _VPLSEPVTM(Oxidation (M))_ VPLSEPVTM(1) VPLSEPVTM(89) 0 0 1 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7554626464844 2 494.754618 987.494683 0.50614 0.00025041 -0.020835 -1.0308E-05 0.4853 0.00024011 494.7547779342066 38.617 0.37134 38.617 38.44 38.811 0 53 17 4 0 0 0 0.0086179 2 20582 20582;20689 89.427 38.572 1 5825200 71913 529 48064 49109 83713;83714 83713 74 0.0004358572308547082 VPLSEPVTM 9 Oxidation (M) _VPLSEPVTM(Oxidation (M))_ VPLSEPVTM(1) VPLSEPVTM(74) 0 0 1 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.5029296875 1 988.50196 987.494683 0.3533 0.00034924 1.184 0.0011704 1.5373 0.0015196 988.5026197478805 38.591 0.24921 38.591 38.476 38.725 0 18 11 2 0 0 0 0.012148 1 20623 20623 74.423 32.328 1 653790 71914 529 48064 49109 83715 83715 74 0.0004358572308547082 VPLSEPVTM 9 Oxidation (M) _VPLSEPVTM(Oxidation (M))_ VPLSEPVTM(1) VPLSEPVTM(89) 0 0 1 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7536010742188 2 494.754618 987.494683 0.78094 0.00038637 -0.32781 -0.00016219 0.45312 0.00022418 494.7546445890839 45.915 0.30578 40.96 40.729 41.035 -4.9549 33 19 2 0 0 0 0.0086179 1 28226 28226 89.427 38.572 1 10724000 71915 529 48064 49109 83716 83716 74 0.0004358572308547082 VPLSEPVTM 9 Unmodified _VPLSEPVTM_ 0 0 0 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.7584228515625 2 486.757161 971.499769 1.4613 0.0007113 -0.24199 -0.00011779 1.2193 0.00059351 486.7570471219912 62.945 0.33331 56.77 56.563 56.896 -6.1757 28 16 2 0 0 0 0.0094915 1 40572 40572 81.864 37.457 1 11667000 71916 529 48064 49110 83717 83717 0.012878895856943018 VPLSEPVTM 9 Unmodified _VPLSEPVTM_ 0 0 0 ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR ENSG00000021776|ENST00000156471|AQR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 486.757161 971.499769 0.30973 0.00015076 -1.3802 -0.00067183 -1.0705 -0.00052107 486.7558525776879 56.827 0.19514 56.827 56.705 56.9 0 0.028544 -0.00099921 NaN 81.864 15 8 3 NaN NaN NaN NaN 0 NaN NaN 0 925770 71917 529 48064 49110 0.012878895856943018 VPLSPVFLHL 10 Unmodified _VPLSPVFLHL_ 0 0 0 ENST00000543714.5_1_11:73689377-73689479:-|nuORF ENST00000543714.5_1_11:73689377-73689479:-|nuORF ENST00000543714.5_1_11:73689377-73689479:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 561.8140869140625 2 561.33951 1120.66447 0.74951 0.00042073 0.50502 0.00028349 1.2545 0.00070422 561.3403675460759 99.62 0.15369 93.444 93.354 93.508 -6.1757 18 9 3 0 0 0 0.23117 1 66380 66380 7.2892 0 1 21592000 71918 15074 48065 49111 83718 83718 0.10896069787804663 VPLSQSVTL 9 Unmodified _VPLSQSVTL_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2751770019531 2 472.276575 942.538597 0.94648 0.000447 -0.19435 -9.1786E-05 0.75213 0.00035521 472.27602196845726 34.996 0.25458 30.901 30.718 30.973 -4.0951 17 14 2 0 0 0 0.14 1 20259 20259 29.082 0 1 5261800 + 71919 21362 48066 49112 83719 83719 0.06502938211713172 VPLSQSVTL 9 Unmodified _VPLSQSVTL_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.276575 942.538597 -0.30203 -0.00014264 -0.28649 -0.0001353 -0.58852 -0.00027794 472.2763945232973 30.713 0.18441 30.713 30.587 30.771 0 -0.094274 -3.1323E-05 NaN 29.082 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 925140 + 71920 21362 48066 49112 0.06502938211713172 VPLSQSVTL 9 Unmodified _VPLSQSVTL_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 472.276575 942.538597 0.94648 0.000447 -0.19435 -9.1786E-05 0.75213 0.00035521 472.27602196845726 34.996 0.25458 30.901 30.718 30.973 -4.0951 0.094274 5.5709E-05 NaN 29.082 17 14 2 NaN NaN NaN NaN 0 NaN NaN 0 5261800 + 71921 21362 48066 49112 0.06502938211713172 VPLSTEHRK 9 Unmodified _VPLSTEHRK_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2064819335938 3 356.204974 1065.59309 1.7126 0.00061002 1.6476 0.0005869 3.3602 0.0011969 356.20556616330833 38.029 0.78835 33.66 33.128 33.916 -4.3689 132 47 4 0 0 0 0.49272 1 22411 22411 4.897 1.31 1 284170000 + 71922 23742 48067 49113 83720 83720 0.06291950083118536 VPLSVEHRI 9 Unmodified _VPLSVEHRI_ 0 0 0 ENST00000300087.6_1_16:23678696-23678876:+|nuORF ENST00000300087.6_1_16:23678696-23678876:+|nuORF ENST00000300087.6_1_16:23678696-23678876:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 525.3097534179688 2 525.308741 1048.60293 NaN NaN NaN NaN NaN NaN NaN 41.344 1 36.736 36.236 37.236 -4.6079 0 0 0 0.098163 1 24816 24816 43.858 11.553 1 71923 11548 48068 49114 83721 83721 0.08057138088520333 VPLTDGECRSL 11 Unmodified _VPLTDGECRSL_ 0 0 0 ENSG00000146247|ENST00000275034|PHIP ENSG00000146247|ENST00000275034|PHIP ENSG00000146247|ENST00000275034|PHIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.2953491210938 2 595.297713 1188.58087 0.68424 0.00040733 -3.5192 -0.002095 -2.8349 -0.0016876 595.2961554877321 66.706 0.30641 66.716 66.561 66.868 0.0095596 24 14 3 0 0 0 0.13889 1 36618 36618 37.974 18.717 1 5141700 71924 5765 48069 49115 83722 83722 -0.005874544422113104 VPLTDPAP 8 Unmodified _VPLTDPAP_ 0 0 0 REV__ENSG00000164050|ENST00000296440|PLXNB1 REV__ENSG00000164050|ENST00000296440|PLXNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 809.4406127929688 1 809.440346 808.433069 0.79346 0.00064226 0.10077 8.1567E-05 0.89423 0.00072383 809.4406520538046 65.323 0.32536 59.147 58.941 59.266 -6.1757 26 18 2 0 0 0 0.17035 1 42326 42326 81.864 7.4677 1 8223000 + 71925 21855 48070 49116 83723 83723 0.021190220860830777 VPLTNKLPVI 10 Unmodified _VPLTNKLPVI_ 0 0 0 ENST00000455482.1_1_10:95898687-95899154:+|nuORF ENST00000455482.1_1_10:95898687-95899154:+|nuORF ENST00000455482.1_1_10:95898687-95899154:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.78466796875 2 547.352617 1092.69068 NaN NaN NaN NaN NaN NaN NaN 99.632 1 99.596 99.096 100.1 -0.036301 0 0 0 0.98914 1 55333 55333 1.8442 0 1 71926 13586 48071 49117 83724 83724 0.14804338959265806 VPLTSTAWL 9 Unmodified _VPLTSTAWL_ 0 0 0 ENST00000486360.1_1_1:203045208-203045709:+|nuORF ENST00000486360.1_1_1:203045208-203045709:+|nuORF ENST00000486360.1_1_1:203045208-203045709:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2793579101562 2 494.279118 986.543683 0.88621 0.00043804 0.063774 3.1522E-05 0.94999 0.00046956 494.27950638698354 73.931 0.27211 73.455 73.394 73.667 -0.47588 19 12 2 0 0 0 0.54444 1 40569 40569 4.756 0.42677 1 766630 71927 14183 48072 49118 83725 83725 0.04987242074309961 VPLTSYLLNF 10 Unmodified _VPLTSYLLNF_ 0 0 0 REV__nc|ENSG00000130270|O60423-3|ATP8B3 REV__nc|ENSG00000130270|O60423-3|ATP8B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8262329101562 2 583.826432 1165.63831 0.30764 0.00017961 -1.1767 -0.000687 -0.86907 -0.00050739 584.3272353342874 95.067 0.22586 94.699 94.634 94.86 -0.36814 17 11 2 0 0 0 0.63399 1 51943 51943 9.3831 0.63772 1 234490 + 71928 19710 48073 49119 83726 83726 0.06211755825665932 VPLTYFDSL 9 Unmodified _VPLTYFDSL_ 0 0 0 REV__ENST00000438529.1_1_7:63573643-63575167:+|nuORF REV__ENST00000438529.1_1_7:63573643-63575167:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 352.1854248046875 3 352.186697 1053.53826 NaN NaN NaN NaN NaN NaN NaN 17.526 1 14.939 14.439 15.439 -2.5866 0 0 0 0.61214 1 9172 9172 12.241 2.8575 1 + 71929 27055 48074 49120 83727 83727 0.01363518491848481 VPLVLRRTLR 10 Unmodified _VPLVLRRTLR_ 0 0 0 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 REV__nc|ENSG00000158089|Q96FL9-2|GALNT14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2745971679688 3 408.275063 1221.80336 NaN NaN NaN NaN NaN NaN NaN 45.398 1 45.369 44.869 45.869 -0.028011 0 0 0 0.99008 1 24386 24386 1.7423 0 1 + 71930 21416 48075 49121 83728 83728 0.20133032475973778 VPLVREITF 9 Unmodified _VPLVREITF_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3212890625 2 537.321317 1072.62808 0.46622 0.00025051 1.2773 0.00068632 1.7435 0.00093683 537.3226224920652 68.216 0.25478 67.735 67.595 67.85 -0.48072 25 11 3 0 0 0 0.033587 1 37263 37263 53.404 11.564 1 2531800 71931 540 48076 49122 83729 83729 0.09467192891065679 VPLVREITF 9 Unmodified _VPLVREITF_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.322021484375 2 537.321317 1072.62808 0.29644 0.00015929 0.34478 0.00018526 0.64122 0.00034454 537.3219388568882 67.66 0.29829 67.678 67.572 67.87 0.018028 36 14 3 0 0 0 0.013609 1 37163 37163 70.332 28.492 1 8636800 71932 540 48076 49122 83730 83730 0.09467192891065679 VPLVSASCRQ 10 Unmodified _VPLVSASCRQ_ 0 0 0 REV__nc|ENSG00000157404|P10721-2|KIT REV__nc|ENSG00000157404|P10721-2|KIT MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8590393066406 3 353.858698 1058.55426 1.409 0.00049858 -0.23929 -8.4676E-05 1.1697 0.0004139 353.8586776075871 18.393 0.63865 15.772 15.548 16.187 -2.6215 172 58 5 0 0 0 0.38092 2 9609 9609;9813 19.626 2.4547 1 23067000 + 71933 21381 48077 49123 83731;83732 83731 0.027329014571023436 VPLWSKIIHTL 11 Unmodified _VPLWSKIIHTL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2682189941406 3 436.267574 1305.78089 2.0057 0.00087502 -1.3974 -0.00060965 0.60827 0.00026537 436.2669117621811 81.923 0.49031 81.983 81.61 82.101 0.059929 33 19 2 0 0 0 0.078696 1 45268 45268 44.945 23.145 1 3192100 71934 3760 48078 49124 83733 83733 0.1402338828770553 VPLWSKIIHTL 11 Unmodified _VPLWSKIIHTL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.9080200195312 3 436.267574 1305.78089 1.1754 0.00051277 -0.095787 -4.1789E-05 1.0796 0.00047098 436.26754865604113 99.421 0.13078 93.245 93.159 93.29 -6.1757 19 8 3 0 0 0 0.04599 2 66192 66192;66220 51.765 38.909 1 47548000 71935 3760 48078 49124 83734;83735 83734 0.1402338828770553 VPLYMFCTL 9 Unmodified _VPLYMFCTL_ 0 0 0 REV__ENSG00000144671|ENST00000448498|SLC22A14 REV__ENSG00000144671|ENST00000448498|SLC22A14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.8115234375 2 543.771757 1085.52896 NaN NaN NaN NaN NaN NaN NaN 58.27 1 58.27 57.77 58.77 0 0 0 0 0.7243 1 32443 32443 8.5933 1.304 1 + 71936 20724 48079 49125 83736 83736 -0.01038289389680358 VPMAEEPEED 10 Unmodified _VPMAEEPEED_ 0 0 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4939575195312 3 382.49375 1144.45942 -0.52845 -0.00020213 1.5344 0.00058689 1.0059 0.00038476 382.49402796573537 41.413 0.3257 41.413 41.137 41.462 0 24 15 2 0 0 0 0.66569 1 22264 22264 6.1918 0 1 3878600 71937 7937 48080 49126 83737 83737 -0.10703121595406628 VPMAGVTASY 10 Oxidation (M) _VPM(Oxidation (M))AGVTASY_ VPM(1)AGVTASY VPM(51)AGVTASY 0 0 1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1;nc|ENSG00000101187|Q96BD0-3|SLCO4A1;nc|ENSG00000101187|Q96BD0-2|SLCO4A1;ENST00000470412.5_1_20:61297769-61301377:+|nuORF nc|ENSG00000101187|Q96BD0-4|SLCO4A1 nc|ENSG00000101187|Q96BD0-4|SLCO4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2442321777344 2 506.244418 1010.47428 0.71101 0.00035994 0.22684 0.00011484 0.93785 0.00047478 506.24404265826985 36.182 0.49113 36.182 35.957 36.448 0 36 24 3 0 0 0 0.081241 2 19142 19142;19248 50.855 32.709 1 8262800 71938 1925 48081 49127 83738;83739 83738 327 -0.030535849367424817 VPMASHPL 8 Unmodified _VPMASHPL_ 0 0 0 REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.4441528320312 1 851.444385 850.437109 1.0133 0.00086275 -0.22599 -0.00019242 0.78729 0.00067033 851.4445464036174 50.17 0.40013 44.631 44.408 44.808 -5.5391 56 25 3 0 0 0 0.19755 2 31319 31319;31456 70.865 34.398 1 35513000 + 71939 27802 48082 49128 83740;83741 83740 0.005907883081590626 VPMASHPL 8 Unmodified _VPMASHPL_ 0 0 0 REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2260131835938 2 426.225831 850.437109 1.3365 0.00056965 -0.30501 -0.00013 1.0315 0.00043965 426.22581828607264 50.12 0.36842 44.581 44.439 44.808 -5.5391 43 23 2 0 0 0 0.57408 2 31348 31348;31484 28.173 12.405 1 24363000 + 71940 27802 48082 49128 83742;83743 83742 0.005907883081590626 VPMASHPL 8 Unmodified _VPMASHPL_ 0 0 0 REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF REV__ENST00000486360.1_1_1:203045416-203045515:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 425.8712768554688 2 426.225831 850.437109 1.3365 0.00056965 -0.30501 -0.00013 1.0315 0.00043965 426.22581828607264 50.12 0.36842 44.581 44.439 44.808 -5.5391 43 23 2 0 0 0 8.7369 1 31380 31380 28.173 8.7342 1 24363000 + 71941 27802 48082 49128 83744 83744 0.005907883081590626 VPMDERFRTL 10 Unmodified _VPMDERFRTL_ 0 0 0 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 ENSG00000152104|ENST00000366956|PTPN14 MSMS AL20221201_MKP_PDAC_01 4 421.8889465332031 3 421.888657 1262.64414 NaN NaN NaN NaN NaN NaN NaN 48.117 1 42.883 42.383 43.383 -5.2339 0 0 0 0.61997 1 29942 29942 13.519 1.8873 1 71942 6164 48083 49129 83745 83745 0.023325310656673537 VPMDGRNAY 9 Unmodified _VPMDGRNAY_ 0 0 0 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7393493652344 2 511.739834 1021.46511 0.49418 0.00025289 0.01037 5.3066E-06 0.50455 0.0002582 511.73952589834374 28.439 0.30445 25.291 25.097 25.401 -3.1482 18 15 2 0 0 0 0.28023 1 15875 15875 18.146 1.2041 1 4031400 71943 4044 48084 49130 83746 83746 -0.04475933502408225 VPMDIPVFT 9 Unmodified _VPMDIPVFT_ 0 0 0 nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;nc|ENSG00000167861|Q8IV36-3|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 nc|ENSG00000167861|Q8IV36-2|HID1 MSMS AL20221201_MKP_PDAC_01 4 509.7698059082031 2 509.767529 1017.5205 NaN NaN NaN NaN NaN NaN NaN 66.388 1 60.212 59.712 60.712 -6.1757 0 0 0 0.46757 1 43175 43175 16.942 3.4344 1 71944 7676 48085 49131 83747 83747 0.012444799653394512 VPMEEATDF 9 Oxidation (M) _VPM(Oxidation (M))EEATDF_ VPM(1)EEATDF VPM(71)EEATDF 0 0 1 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7235717773438 2 527.723515 1053.43248 0.76242 0.00040235 -0.34235 -0.00018067 0.42007 0.00022168 527.7233413237634 45.765 0.56425 40.81 40.555 41.119 -4.9549 64 37 2 0 0 0 0.013472 1 28211 28211 70.716 42.229 1 11861000 71945 2299 48086 49132 83748 83748 394 -0.09210185415940941 VPMEEATDF 9 Unmodified _VPMEEATDF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;nc|ENSG00000105287|Q9BZL6-2|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7272338867188 2 519.726058 1037.43756 1.5096 0.00078457 0.31687 0.00016468 1.8264 0.00094925 519.7261306739751 58.627 0.42035 52.553 52.336 52.756 -6.0745 49 23 3 0 0 0 0.038285 1 37584 37584 50.855 16.753 1 22830000 71946 2299 48086 49133 83749 83749 -0.0796588155333211 VPMEMFNYCS 10 Unmodified _VPMEMFNYCS_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7429809570312 2 610.74287 1219.47119 0.44757 0.00027335 -0.43543 -0.00026593 0.012141 7.4152E-06 610.7426379646469 57.606 0.57389 57.606 57.371 57.944 0 106 26 6 0 0 0 0.70951 1 32110 32110 1.8442 1.8442 1 104400000 71947 7440 48087 49134 83750 83750 -0.12976919377388185 VPMFLLLLY 9 Unmodified _VPMFLLLLY_ 0 0 0 REV__ENST00000258534.12_1_12:102315880-102316018:+|nuORF REV__ENST00000258534.12_1_12:102315880-102316018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8268432617188 2 554.827389 1107.64023 -0.10322 -5.727E-05 -2.625 -0.0014564 -2.7283 -0.0015137 554.8262401140003 36.905 0.19708 36.655 36.554 36.751 -0.2497 13 8 2 0 0 0 0.36964 1 19400 19400 9.3474 0 1 3103600 + 71948 24944 48088 49135 83751 83751 0.09071093309944445 VPMFRNVSL 9 Oxidation (M) _VPM(Oxidation (M))FRNVSL_ VPM(1)FRNVSL VPM(66)FRNVSL 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.789794921875 2 539.789327 1077.5641 0.52812 0.00028507 -0.78638 -0.00042448 -0.25826 -0.00013941 539.7890183763831 52.206 0.37026 52.147 51.939 52.309 -0.058918 59 17 5 0 0 0 0.017075 2 28222 28222;28319 66.457 32.055 1 46772000 71949 1354 48089 49136 83752;83753 83752 227 0.028420894624787252 VPMFRNVSL 9 Oxidation (M) _VPM(Oxidation (M))FRNVSL_ VPM(1)FRNVSL VPM(58)FRNVSL 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.78955078125 2 539.789327 1077.5641 0.80819 0.00043625 -0.54617 -0.00029482 0.26202 0.00014144 539.7891314422209 52.537 0.31991 52.479 52.309 52.629 -0.058918 54 15 5 0 0 0 0.025842 2 28523 28425;28523 57.722 17.765 1 51657000 71950 1354 48089 49136 83754;83755 83755 227 0.028420894624787252 VPMGIPRTL 9 Unmodified _VPMGIPRTL_ 0 0 0 nc|ENSG00000167600|Q96SQ9-2|CYP2S1;ENSG00000167600|ENST00000310054|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 nc|ENSG00000167600|Q96SQ9-2|CYP2S1 MSMS AL20221201_MKP_PDAC_01 4 492.2902526855469 2 492.288963 982.563372 NaN NaN NaN NaN NaN NaN NaN 61.089 1 54.941 54.441 55.441 -6.1478 0 0 0 0.065563 1 39329 39329 52.268 16.224 1 71951 7633 48090 49137 83756 83756 0.07139294813441666 VPMGLAFLTL 10 Unmodified _VPMGLAFLTL_ 0 0 0 REV__ENSG00000214654|ENST00000689072|B3GALT9 REV__ENSG00000214654|ENST00000689072|B3GALT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.2788696289062 2 531.306821 1060.59909 1.1517 0.00061192 1.2958 0.00068845 2.4475 0.0013004 531.8093693546888 95.294 0.39133 89.118 88.891 89.282 -6.1757 45 21 3 0 0 0 0.46535 1 62996 62996 18.135 5.6034 1 9230800 + 71952 24316 48091 49138 83757 83757 0.07121332270435232 VPMKAAPRA 9 Unmodified _VPMKAAPRA_ 0 0 0 REV__ENST00000392008.6_1_2:237994547-237995380:+|nuORF REV__ENST00000392008.6_1_2:237994547-237995380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7732849121094 2 470.77348 939.532406 -0.22343 -0.00010519 -0.72518 -0.0003414 -0.94862 -0.00044658 470.77316411590596 33.993 0.27599 33.802 33.668 33.944 -0.19131 20 10 3 0 0 0 0.59218 1 17741 17741 1.8442 0 1 1313800 + 71953 26382 48092 49139 83758 83758 0.06022141499192912 VPMKAAPRA 9 Unmodified _VPMKAAPRA_ 0 0 0 REV__ENST00000392008.6_1_2:237994547-237995380:+|nuORF REV__ENST00000392008.6_1_2:237994547-237995380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7729187011719 2 470.77348 939.532406 -0.36007 -0.00016951 -1.2044 -0.00056701 -1.5645 -0.00073653 470.7727978986812 36.854 0.40834 36.876 36.661 37.07 0.021545 49 18 3 0 0 0 0.59218 1 19568 19568 1.8442 1.0506 1 7453500 + 71954 26382 48092 49139 83759 83759 0.06022141499192912 VPMLLIIL 8 Unmodified _VPMLLIIL_ 0 0 0 REV__ENSG00000152766|ENST00000371930|ANKRD22 REV__ENSG00000152766|ENST00000371930|ANKRD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 911.6002807617188 1 911.599823 910.592547 -0.33227 -0.0003029 0.82256 0.00074985 0.49029 0.00044695 911.5984383650155 104.07 0.07753 104.02 103.96 104.04 -0.048737 5 3 2 0 0 0 0.81107 1 57786 57786 0 0 1 824750 + 71955 21133 48093 49140 83760 83760 0.13367439109742918 VPMMAQTNKF 10 Unmodified _VPMMAQTNKF_ 0 0 0 nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1 nc|ENSG00000106366|P05121-2|SERPINE1 nc|ENSG00000106366|P05121-2|SERPINE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.789306640625 2 583.788469 1165.56239 NaN NaN NaN NaN NaN NaN NaN 40.298 1 40.001 39.501 40.501 -0.29716 0 0 0 0.57227 1 21297 21297 22.736 0 1 71956 2421 48094 49141 83761 83761 -0.013772876177654325 VPMMHGAT 8 Unmodified _VPMMHGAT_ 0 0 0 nc|ENSG00000076770|Q9NUK0-4|MBNL3;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000076770|Q9NUK0-2|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000076770|Q9NUK0-5|MBNL3 nc|ENSG00000076770|Q9NUK0-4|MBNL3 nc|ENSG00000076770|Q9NUK0-4|MBNL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.1952514648438 2 422.196216 842.37788 NaN NaN NaN NaN NaN NaN NaN 17.286 1 17.3 16.8 17.8 0.013865 0 0 0 0.97444 1 8583 8583 0.79363 0.19213 1 71957 1194 48095 49142 83762 83762 -0.04961430977675718 VPMMYFHEL 9 Unmodified _VPMMYFHEL_ 0 0 0 REV__ENST00000487578.2_1_1:163295841-163298095:+|nuORF REV__ENST00000487578.2_1_1:163295841-163298095:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7719116210938 2 583.772288 1165.53002 0.13822 8.0689E-05 -0.22868 -0.0001335 -0.090459 -5.2807E-05 583.7721207709595 78.734 0.97489 78.734 78.101 79.076 0 99 45 3 0 0 0 0.37804 4 43604 43501;43604;43707;43805 13.508 2.684 1 1215400 + 71958 20616 48096 49143 83763;83764;83765;83766 83764 -0.04612075020759221 VPMNGFAELY 10 Unmodified _VPMNGFAELY_ 0 0 0 nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4;nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4 nc|ENSG00000049759|Q96PU5-9|NEDD4L;ENSG00000069869|ENST00000435532|NEDD4 nc|ENSG00000049759|Q96PU5-9|NEDD4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7745361328125 2 570.773342 1139.53213 0.8763 0.00050017 0.6204 0.00035411 1.4967 0.00085427 570.773524475401 82.922 0.45155 76.746 76.49 76.941 -6.1757 38 25 2 0 0 0 0.024115 2 54439 54439;54587 71.922 47.902 1 12578000 71959 714;1008 48097 49144 83767;83768 83767 -0.03205323011297878 VPMPRSAVRLF 11 Unmodified _VPMPRSAVRLF_ 0 0 0 REV__nc|ENSG00000205879|Q658T7-2|FAM90A2P REV__nc|ENSG00000205879|Q658T7-2|FAM90A2P MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.9112243652344 3 424.913025 1271.71725 0.74397 0.00031612 -1.66 -0.00070536 -0.91603 -0.00038923 424.9123453904793 36.569 0.66575 32.286 31.905 32.571 -4.2835 114 40 4 0 0 0 0.50268 1 21170 21170 16.275 0.7361 1 112960000 + 71960 29917 48098 49145 83769 83769 0.09225704578943805 VPMQRVLKY 9 Unmodified _VPMQRVLKY_ 0 0 0 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3;nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1;nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2 nc|ENSG00000134215|Q9UKW4-2|VAV3;ENSG00000141968|ENST00000602142|VAV1;nc|ENSG00000160293|P52735-3|VAV2 ENSG00000141968|ENST00000602142|VAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5564575195312 3 378.554838 1132.64269 2.2144 0.00083827 2.0789 0.00078697 4.2933 0.0016252 378.55556040496634 95.951 0.31984 95.955 95.737 96.057 0.004158 22 11 3 0 0 0 0.58466 1 53285 53285 1.1933 0 1 1716100 71961 4569;5384;6713 48099 49146 83770 83770 0.08166941767581193 VPMRKRHISK 10 Unmodified _VPMRKRHISK_ 0 0 0 REV__ENSG00000100226|ENST00000216044|GTPBP1 REV__ENSG00000100226|ENST00000216044|GTPBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 417.9206848144531 3 417.920403 1250.73938 0.18975 7.9299E-05 0.89896 0.00037569 1.0887 0.00045499 417.9207064230456 39.323 0.48205 39.334 39.152 39.634 0.011452 83 22 5 0 0 0 0.71981 1 20991 20991 0.69767 0.69767 1 68452000 + 71962 18029 48100 49147 83771 83771 0.1240392904737746 VPMSPRSLI 9 Unmodified _VPMSPRSLI_ 0 0 0 REV__ENSG00000163623|ENST00000295886|NKX6-1 REV__ENSG00000163623|ENST00000295886|NKX6-1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 500.2504577636719 2 500.28642 998.558287 1.2715 0.00063611 -0.70299 -0.0003517 0.5685 0.00028441 500.28609874072765 50.204 0.41193 44.665 44.502 44.914 -5.5391 39 26 2 0 0 0 0.16895 1 31572 31572 24.021 2.2739 1 8769100 + 71963 21790 48101 49148 83772 83772 0.05894990950844203 VPMYDPVIYN 10 Unmodified _VPMYDPVIYN_ 0 0 0 REV__ENSG00000197102|ENST00000360184|DYNC1H1 REV__ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7938842773438 2 605.794275 1209.574 NaN NaN NaN NaN NaN NaN NaN 76.005 1 76.005 75.505 76.505 0 0 0 0 0.91523 1 42267 42267 7.2892 1.0834 1 + 71964 23893 48102 49149 83773 83773 -0.022407673227689884 VPNAGRGLV 9 Unmodified _VPNAGRGLV_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7624816894531 2 441.761426 881.5083 NaN NaN NaN NaN NaN NaN NaN 30.505 1 30.405 29.905 30.905 -0.10008 0 0 0 0.23581 1 15833 15833 28.487 2.1456 1 71965 1880 48103 49150 83774 83774 0.06280624337182417 VPNAGRGLVRL 11 Unmodified _VPNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5717468261719 3 384.571768 1150.69348 0.12739 4.8992E-05 -0.42348 -0.00016286 -0.29609 -0.00011387 384.5716155772529 38.756 0.51232 38.767 38.429 38.941 0.011452 80 24 5 0 0 0 0.48615 1 20578 20578 17.863 13.457 1 246920000 71966 1880 48104 49151 83775 83775 0.12415607136813378 VPNAGRGLVRL 11 Unmodified _VPNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.3538818359375 2 576.354014 1150.69348 0.36761 0.00021188 -0.65307 -0.0003764 -0.28546 -0.00016453 576.3539007189552 38.756 0.40092 38.767 38.479 38.88 0.011452 40 19 3 0 0 0 0.13715 1 20635 20635 38.176 17.722 1 21802000 71967 1880 48104 49151 83776 83776 0.12415607136813378 VPNAGRGLVRL 11 Unmodified _VPNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5721435546875 3 384.571768 1150.69348 1.0987 0.00042255 -0.33553 -0.00012904 0.76321 0.00029351 384.57163810945104 43.272 0.86748 38.508 38.225 39.092 -4.7648 172 57 4 0 0 0 0.28407 3 26249 26105;26249;26510 27.088 14.762 1 494230000 71968 1880 48104 49151 83777;83778;83779 83778 0.12415607136813378 VPNAGRGLVRL 11 Unmodified _VPNAGRGLVRL_ 0 0 0 ENSG00000100823|ENST00000216714|APEX1;ENST00000557159.5_1_14:20924026-20925664:+|nuORF ENSG00000100823|ENST00000216714|APEX1 ENSG00000100823|ENST00000216714|APEX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3541259765625 2 576.354014 1150.69348 0.73499 0.00042362 -0.43504 -0.00025074 0.29995 0.00017288 576.3538257981598 43.287 0.53553 38.522 38.272 38.808 -4.7648 87 36 3 0 0 0 0.48615 2 26291 26152;26291 17.113 10.417 1 71721000 71969 1880 48104 49151 83780;83781 83781 0.12415607136813378 VPNALEFA 8 Unmodified _VPNALEFA_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 860.4512939453125 1 860.451245 859.443968 0.20923 0.00018003 0.011415 9.8221E-06 0.22064 0.00018985 860.4516162253848 66.25 0.35489 66.25 66.091 66.446 0 24 15 2 0 0 0 0.75262 1 37029 37029 12.532 3.1841 1 1914300 71970 10272 48105 49152 83782 83782 0.008624244603765874 VPNCAMKVFTN 11 Unmodified _VPNCAMKVFTN_ 0 0 0 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 ENSG00000109424|ENST00000262999|UCP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.29931640625 2 612.299201 1222.58385 -0.35124 -0.00021507 -0.032617 -1.9971E-05 -0.38386 -0.00023504 612.2993253777001 36.573 0.2729 36.323 36.132 36.405 -0.2497 27 12 4 0 0 0 0.44182 1 19166 19166 19.362 0.10495 1 7902500 71971 2646 48106 49153 83783 83783 -0.01853902589050449 VPNCFMSVTMV 11 Unmodified _VPNCFMSVTMV_ 0 0 0 ENST00000465445.6_1_14:24033375-24035332:-|nuORF ENST00000465445.6_1_14:24033375-24035332:-|nuORF ENST00000465445.6_1_14:24033375-24035332:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.1878051757812 3 409.857201 1226.54977 NaN NaN NaN NaN NaN NaN NaN 40.792 1 40.792 40.292 41.292 0 0 0 0 0.79635 1 21951 21951 6.6235 0.84002 1 71972 13736 48107 49154 83784 83784 -0.054440670723352014 VPNDIQSEL 9 Unmodified _VPNDIQSEL_ 0 0 0 nc|ENSG00000110768|P32780-2|GTF2H1;ENST00000418116.6_1_11:18344284-18382305:+|nuORF;ENSG00000110768|ENST00000265963|GTF2H1 nc|ENSG00000110768|P32780-2|GTF2H1 nc|ENSG00000110768|P32780-2|GTF2H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7591247558594 2 507.758746 1013.50294 0.83283 0.00042288 -2.2241 -0.0011293 -1.3912 -0.00070642 507.75733116687775 47.572 0.48976 47.572 47.362 47.852 0 46 22 3 0 0 0 0.06294 1 26040 26040 41.84 17.819 1 5565500 71973 2740 48108 49155 83785 83785 -0.00327144035964011 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 940.43994140625 1 940.441074 939.433798 -0.33921 -0.00031901 -0.039533 -3.7178E-05 -0.37874 -0.00035618 940.4408225431567 56.347 0.67802 56.347 56.007 56.685 0 103 30 4 0 0 0 0.3408 4 31283 31183;31283;31390;31495 50.855 13.649 1 53446000 + 71974 17244 48109 49156 83786;83787;83788;83789 83787 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7241821289062 2 470.724175 939.433798 0.043227 2.0348E-05 -0.15446 -7.2708E-05 -0.11123 -5.236E-05 470.72403273691526 56.293 0.67802 56.293 56.007 56.685 0 97 30 4 0 0 0 0.42423 3 31204 31204;31306;31419 42.095 9.7891 1 45013000 + 71975 17244 48109 49156 83790;83791;83792 83790 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.4407348632812 1 940.441074 939.433798 -0.0012533 -1.1787E-06 0.26502 0.00024924 0.26377 0.00024806 940.4410468435067 56.943 0.46681 56.458 56.205 56.672 -0.48554 45 21 3 0 0 0 0.42423 2 30948 30840;30948 42.095 5.3384 1 5797600 + 71976 17244 48109 49156 83793;83794 83794 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7232971191406 2 470.724175 939.433798 0.11479 5.4033E-05 -0.75512 -0.00035545 -0.64033 -0.00030142 470.7238187267653 56.915 0.37891 56.429 56.247 56.626 -0.48554 33 17 2 0 0 0 0.55032 1 30978 30978 30.225 3.3412 1 2713700 + 71977 17244 48109 49156 83795 83795 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 940.4418334960938 1 940.441074 939.433798 0.95608 0.00089913 -0.1822 -0.00017135 0.77388 0.00072778 940.4407997308699 64.56 0.71648 58.384 58.017 58.734 -6.1757 111 39 4 0 0 0 0.3408 4 41627 41627;41754;41891;42022 50.855 10.898 1 131010000 + 71978 17244 48109 49156 83796;83797;83798;83799 83796 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.7244262695312 2 470.724175 939.433798 1.2543 0.00059044 -0.092216 -4.3408E-05 1.1621 0.00054703 470.7241534667149 64.576 0.77403 58.4 57.996 58.77 -6.1757 118 42 3 0 0 0 0.42423 4 41675 41675;41805;41939;42085 42.095 28.487 1 160110000 + 71979 17244 48109 49156 83800;83801;83802;83803 83800 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.724175 939.433798 0.043227 2.0348E-05 -0.15446 -7.2708E-05 -0.11123 -5.236E-05 470.72403273691526 56.293 0.67802 56.293 56.007 56.685 0 -0.067891 0.00020894 NaN 42.095 97 30 4 NaN NaN NaN NaN 0 NaN NaN 0 45013000 + 71980 17244 48109 49156 -0.03834183264859803 VPNDYSVF 8 Unmodified _VPNDYSVF_ 0 0 0 REV__nc|ENSG00000149187|Q92879-5|CELF1 REV__nc|ENSG00000149187|Q92879-5|CELF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 940.441074 939.433798 -0.0012533 -1.1787E-06 0.26502 0.00024924 0.26377 0.00024806 940.4410468435067 56.943 0.46681 56.458 56.205 56.672 -0.48554 0.055347 0.00016175 NaN 50.855 45 21 3 NaN NaN NaN NaN 0 NaN NaN 0 5797600 + 71981 17244 48109 49156 -0.03834183264859803 VPNESFFNF 9 Unmodified _VPNESFFNF_ 0 0 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7545166015625 2 550.756007 1099.49746 0.54474 0.00030002 -1.7781 -0.00097932 -1.2334 -0.0006793 550.7550798912922 84.632 0.36865 84.132 83.955 84.324 -0.49961 21 16 2 0 0 0 0.46501 1 46263 46263 9.3831 4.6271 1 602580 71982 10370 48110 49157 83804 83804 -0.04830822827761949 VPNFIFDEF 9 Unmodified _VPNFIFDEF_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2763061523438 2 564.274032 1126.53351 0.51214 0.00028899 3.016 0.0017019 3.5282 0.0019909 564.2755684738083 99.148 0.27702 98.955 98.841 99.118 -0.19321 18 9 3 0 0 0 0.34999 1 54152 54152 14.838 6.9281 1 1945700 71983 7273 48111 49158 83805 83805 -0.02469365650904365 VPNFIFDEF 9 Unmodified _VPNFIFDEF_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5;ENST00000519042.2_1_8:126036861-126044688:-|nuORF ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.274032 1126.53351 4.6158 0.0026046 2.7279 0.0015393 7.3437 0.0041439 564.2746801418724 99.002 0.14011 98.974 98.863 99.003 -0.028282 0.0096765 -0.00016735 NaN 14.838 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 833230 71984 7273 48111 49158 -0.02469365650904365 VPNGAIGSF 9 Unmodified _VPNGAIGSF_ 0 0 0 REV__nc|ENSG00000124493|Q14833-5|GRM4;REV__nc|ENSG00000124493|Q14833-3|GRM4 REV__nc|ENSG00000124493|Q14833-5|GRM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8882751464844 2 431.226885 860.439217 0.3318 0.00014308 -0.69268 -0.0002987 -0.36087 -0.00015562 431.2266284383681 46.154 0.15841 45.818 45.762 45.92 -0.33664 12 7 2 0 0 0 0.209 1 24704 24704 7.2892 1.5288 1 2804100 + 71985 29615;19451 48112 49159 83806 83806 0.0034154031761772785 VPNGRGEC 8 Unmodified _VPNGRGEC_ 0 0 0 REV__nc|ENSG00000162706|Q8N126-2|CADM3 REV__nc|ENSG00000162706|Q8N126-2|CADM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.1925048828125 2 416.192519 830.370486 NaN NaN NaN NaN NaN NaN NaN 14.928 1 14.933 14.433 15.433 0.0057774 0 0 0 0.97444 1 7421 7421 0.79363 0 1 + 71986 21680 48113 49160 83807 83807 -0.05148447253748145 VPNHHLAG 8 Unmodified _VPNHHLAG_ 0 0 0 nc|ENSG00000204406|Q9P267-2|MBD5;nc|ENSG00000204406|Q9P267|MBD5;ENSG00000204406|ENST00000642680|MBD5 nc|ENSG00000204406|Q9P267-2|MBD5 nc|ENSG00000204406|Q9P267-2|MBD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.7246704101562 2 422.724844 843.435135 -0.37138 -0.00015699 -0.16597 -7.0162E-05 -0.53735 -0.00022715 422.7247844780273 22.214 0.22183 22.214 22.123 22.345 0 15 10 2 0 0 0 0.48233 1 11288 11288 36.466 2.2788 1 1371200 71987 10279 48114 49161 83808 83808 0.007154956145541291 VPNKVIQCF 9 Carbamidomethyl (C) _VPNKVIQC(Carbamidomethyl (C))F_ VPNKVIQC(1)F VPNKVIQC(130)F 0 1 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.798828125 2 552.797152 1103.57975 -0.039419 -2.1791E-05 0.057051 3.1537E-05 0.017632 9.7467E-06 552.7971243104225 44.374 0.21269 44.058 43.951 44.164 -0.31585 35 15 3 0 0 0 0.0018186 1 23637 23637 133.7 106.07 1 65960000 71988 5318;130 48115 49162 83809 83809 2 0.0321037597952909 VPNKVIQCF 9 Carbamidomethyl (C) _VPNKVIQC(Carbamidomethyl (C))F_ VPNKVIQC(1)F VPNKVIQC(130)F 0 1 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.2960205078125 2 552.797152 1103.57975 0.22471 0.00012422 0.28838 0.00015942 0.51309 0.00028364 552.7973348170908 44.016 0.18678 43.994 43.916 44.103 -0.022064 19 13 2 0 0 0 0.0018186 1 23598 23598 133.7 101.4 1 28842000 71989 5318;130 48115 49162 83810 83810 2 0.0321037597952909 VPNKVIQCF 9 Carbamidomethyl (C) _VPNKVIQC(Carbamidomethyl (C))F_ VPNKVIQC(1)F VPNKVIQC(93)F 0 1 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.797607421875 2 552.797152 1103.57975 1.0925 0.00060395 -1.2284 -0.00067907 -0.1359 -7.5125E-05 552.7966079381558 49.426 0.52556 44.03 43.773 44.298 -5.3961 114 33 4 0 0 0 0.0082281 3 30756 30756;30881;31003 92.822 71.075 1 1527399999.9999998 71990 5318;130 48115 49162 83811;83812;83813 83811 2 0.0321037597952909 VPNKVIQCF 9 Unmodified _VPNKVIQCF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2865600585938 2 524.28642 1046.55829 0.22598 0.00011848 -0.29851 -0.0001565 -0.072531 -3.8027E-05 524.2865630252895 55.657 0.33444 55.179 55.005 55.34 -0.47798 34 15 3 0 0 0 0.019303 1 30172 30172 64.236 46.101 1 4817500 71991 5318;130 48115 49163 83814 83814 0.03686990950814106 VPNKVIQCF 9 Unmodified _VPNKVIQCF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.229736328125 2 524.28642 1046.55829 1.0537 0.00055244 -1.7521 -0.00091859 -0.69837 -0.00036615 524.2854634276432 57.447 0.43074 51.42 51.219 51.65 -6.0275 35 22 2 0 0 0 0.11012 1 36731 36731 36.044 9.1605 1 52202000 71992 5318;130 48115 49163 83815 83815 0.03686990950814106 VPNKVIQCF 9 Unmodified _VPNKVIQCF_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;CLTC-VMP1|5|fusion;CLTC-VMP1|3|fusion;CLTC-VMP1|21|fusion;CLTC-VMP1|4|fusion;CLTC-VMP1|17|fusion;CLTC-VMP1|22|fusion;CLTC-VMP1|11|fusion;CLTC-VMP1|16|fusion;CLTC-VMP1|20|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 524.28642 1046.55829 0.47495 0.00024901 1.2874 0.00067499 1.7624 0.000924 524.2869299573589 54.985 0.25072 54.985 54.876 55.126 0 -0.097157 0.0013219 NaN 64.236 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1010500 71993 5318;130 48115 49163 0.03686990950814106 VPNLQKPIY 9 Unmodified _VPNLQKPIY_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.313720703125 2 536.313492 1070.61243 0.027249 1.4614E-05 0.90523 0.00048549 0.93248 0.0005001 536.3140157635534 31.747 0.46341 31.617 31.354 31.818 -0.12915 31 18 2 0 0 0 0.41742 1 16557 16557 11.64 1.5664 1 2157200 + 71994 24323 48116 49164 83816 83816 0.07994906374028687 VPNLQKPIY 9 Unmodified _VPNLQKPIY_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.3142700195312 2 536.313492 1070.61243 -0.33541 -0.00017988 1.2988 0.00069658 0.96343 0.0005167 536.3140799475876 33.376 0.25164 33.217 33.118 33.369 -0.15918 28 9 4 0 0 0 0.30562 1 17411 17411 16.942 1.0951 1 3276000 + 71995 24323 48116 49164 83817 83817 0.07994906374028687 VPNLQKPIY 9 Unmodified _VPNLQKPIY_ 0 0 0 REV__ENSG00000214814|ENST00000522917|FER1L6 REV__ENSG00000214814|ENST00000522917|FER1L6 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 536.313492 1070.61243 1.1412 0.00061204 0.047942 2.5712E-05 1.1891 0.00063775 536.3135888778237 37.495 0.27926 33.212 33.007 33.286 -4.2835 -0.0026942 -0.00080235 NaN 16.942 30 16 2 NaN NaN NaN NaN 0 NaN NaN 0 14611000 + 71996 24323 48116 49164 0.07994906374028687 VPNLSWEV 8 Unmodified _VPNLSWEV_ 0 0 0 ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2482604980469 2 472.247818 942.481082 0.23149 0.00010932 -0.012949 -6.115E-06 0.21854 0.00010321 472.2476701825492 64.924 0.32758 64.924 64.765 65.093 0 34 15 3 0 0 0 0.78849 1 36198 36198 9.3474 0 1 3537600 71997 12255 48117 49165 83818 83818 0.007540960061305668 VPNLSWEV 8 Unmodified _VPNLSWEV_ 0 0 0 ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2477722167969 2 472.247818 942.481082 0.24646 0.00011639 0.049428 2.3342E-05 0.29589 0.00013973 472.2479039005913 65.44 0.26601 64.955 64.835 65.101 -0.48428 18 12 2 0 0 0 0.77907 1 35698 35698 10.183 10.183 1 1987000 71998 12255 48117 49165 83819 83819 0.007540960061305668 VPNLSWEV 8 Unmodified _VPNLSWEV_ 0 0 0 ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 472.247818 942.481082 0.23149 0.00010932 -0.012949 -6.115E-06 0.21854 0.00010321 472.2476701825492 64.924 0.32758 64.924 64.765 65.093 0 -0.015719 -2.3361E-05 NaN 10.183 34 15 3 NaN NaN NaN NaN 0 NaN NaN 0 3537600 71999 12255 48117 49165 0.007540960061305668 VPNLSWEV 8 Unmodified _VPNLSWEV_ 0 0 0 ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF ENST00000368096.5_1_1:159893305-159893494:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 472.247818 942.481082 0.24646 0.00011639 0.049428 2.3342E-05 0.29589 0.00013973 472.2479039005913 65.44 0.26601 64.955 64.835 65.101 -0.48428 0.015719 3.5553E-05 NaN 10.183 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1987000 72000 12255 48117 49165 0.007540960061305668 VPNMVCLHKYI 11 Unmodified _VPNMVCLHKYI_ 0 0 0 ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2348327636719 3 439.566638 1315.67808 0.086957 3.8223E-05 -0.42044 -0.00018481 -0.33349 -0.00014659 439.5667224769136 32.21 0.40734 32.24 32.033 32.44 0.029747 68 17 6 0 0 0 0.6889 1 16933 16933 2.4348 0.34878 1 21091000 72001 4841 48118 49166 83820 83820 0.032872362330863325 VPNMVCLHKYI 11 Unmodified _VPNMVCLHKYI_ 0 0 0 ENSG00000136643|ENST00000366960|RPS6KC1;nc|ENSG00000136643|Q96S38-2|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 ENSG00000136643|ENST00000366960|RPS6KC1 MSMS AL20221201_MKP_PDAC_01 4 439.5670166015625 3 439.566638 1315.67808 NaN NaN NaN NaN NaN NaN NaN 36.191 1 31.999 31.499 32.499 -4.1928 0 0 0 0.71476 1 21109 21109 12.856 0.62836 1 72002 4841 48118 49166 83821 83821 0.032872362330863325 VPNPDPVTM 9 Oxidation (M) _VPNPDPVTM(Oxidation (M))_ VPNPDPVTM(1) VPNPDPVTM(92) 0 0 1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2369384765625 2 493.236593 984.458632 0.16511 8.1437E-05 0.047678 2.3517E-05 0.21278 0.00010495 493.2368399356615 31.456 0.40477 31.456 31.276 31.681 0 49 19 3 0 0 0 0.0082661 2 16429 16329;16429 92.491 58.389 1 9934100 72003 6809 48119 49167 83822;83823 83823 1178 -0.034218714537814776 VPNPDPVTM 9 Oxidation (M) _VPNPDPVTM(Oxidation (M))_ VPNPDPVTM(1) VPNPDPVTM(92) 0 0 1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2367858886719 2 493.236593 984.458632 1.2216 0.00060255 -0.68347 -0.00033711 0.53816 0.00026544 493.2362117028316 37.637 0.45296 33.268 33.034 33.487 -4.3689 57 26 3 0 0 0 0.0082661 2 22159 22036;22159 92.491 54.34 1 27973000 72004 6809 48119 49167 83824;83825 83825 1178 -0.034218714537814776 VPNPDPVTM 9 Unmodified _VPNPDPVTM_ 0 0 0 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 ENSG00000161800|ENST00000312377|RACGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2401123046875 2 485.239135 968.463718 0.63351 0.00030741 0.35363 0.0001716 0.98714 0.000479 485.2392035615107 53.14 0.37858 47.336 47.199 47.578 -5.8042 37 22 2 0 0 0 0.018301 1 33628 33628 65.235 27.084 1 20892000 72005 6809 48119 49168 83826 83826 -0.021775675911726466 VPNQDIPG 8 Unmodified _VPNQDIPG_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.4264526367188 1 839.425758 838.418482 0.1831 0.0001537 1.0281 0.00086303 1.2112 0.0010167 839.42639186017 67.237 0.35052 67.237 67.016 67.366 0 26 14 2 0 0 0 0.65867 1 37535 37535 20.871 3.9289 1 1381000 72006 7792 48120 49169 83827 83827 -0.007190500620481544 VPNQDIPG 8 Unmodified _VPNQDIPG_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.4273681640625 1 839.425758 838.418482 0.093625 7.8591E-05 0.51429 0.0004317 0.60791 0.0005103 839.4261644317477 67.712 0.29491 67.229 67.096 67.391 -0.48219 22 12 2 0 0 0 0.65867 2 37060 36957;37060 20.871 7.3633 1 1193300 72007 7792 48120 49169 83828;83829 83829 -0.007190500620481544 VPNQDYEFQA 10 Unmodified _VPNQDYEFQA_ 0 0 0 ENSG00000161036|ENST00000292616|LRWD1;ENST00000473880.5_1_7:102109277-102110330:+|nuORF ENSG00000161036|ENST00000292616|LRWD1 ENSG00000161036|ENST00000292616|LRWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.77197265625 2 605.772385 1209.53022 -0.75662 -0.00045834 -0.054038 -3.2735E-05 -0.81066 -0.00049107 605.7723883098068 34.934 0.27864 34.934 34.793 35.072 0 34 14 3 0 0 0 0.42068 1 18431 18431 20.454 2.3073 1 11356000 72008 6781 48121 49170 83830 83830 -0.06616660495569704 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.88916015625 3 356.888986 1067.64513 0.481 0.00017166 1.2581 0.000449 1.7391 0.00062067 356.88930392030613 27.556 0.22786 27.51 27.391 27.619 -0.046408 14 10 2 0 0 0 0.047788 1 14204 14204 35.612 17.239 1 5203800 72009 977 48122 49171 83831 83831 0.11401113496890503 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 356.8887634277344 3 356.888986 1067.64513 0.15506 5.5339E-05 0.37528 0.00013393 0.53034 0.00018927 356.8890548969359 27.416 0.33368 27.445 27.284 27.618 0.028664 24 14 2 0 0 0 0.047788 1 14225 14225 35.612 17.239 1 13999000 72010 977 48122 49171 83832 83832 0.11401113496890503 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.8296508789062 2 534.82984 1067.64513 NaN NaN NaN NaN NaN NaN NaN 27.487 1 27.515 27.015 28.015 0.028664 0 0 0 0.27852 1 14285 14285 26.268 7.0112 1 72011 977 48122 49171 83833 83833 0.11401113496890503 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8893432617188 3 356.888986 1067.64513 1.5572 0.00055576 -0.24494 -8.7417E-05 1.3123 0.00046834 356.888829634051 30.297 0.51787 26.801 26.553 27.07 -3.497 66 25 4 0 0 0 0.032796 2 17074 17074;17185 42.312 18.523 1 111900000 72012 977 48122 49171 83834;83835 83834 0.11401113496890503 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.8302001953125 2 534.82984 1067.64513 0.80352 0.00042975 -0.54148 -0.0002896 0.26204 0.00014015 534.8296582291576 30.311 0.37987 26.814 26.612 26.992 -3.497 39 18 3 0 0 0 0.085319 1 17108 17108 36.506 11.107 1 30770000 72013 977 48122 49171 83836 83836 0.11401113496890503 VPNQKRLTL 9 Unmodified _VPNQKRLTL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 356.888986 1067.64513 -0.67259 -0.00024004 0.9815 0.00035029 0.30891 0.00011025 356.8892919233434 27.58 0.21317 27.58 27.508 27.721 0 0.068512 0.00023238 NaN 35.612 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1501800 72014 977 48122 49171 0.11401113496890503 VPNQKRLTLL 10 Unmodified _VPNQKRLTLL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5835876464844 3 394.583674 1180.72919 0.30286 0.0001195 -0.078343 -3.0913E-05 0.22452 8.8591E-05 394.5836147851228 40.456 0.41639 40.461 40.256 40.672 0.0050583 77 19 5 0 0 0 0.095786 2 21609 21503;21609 35.08 20.123 1 105300000 72015 977 48123 49172 83837;83838 83838 0.14605644593802936 VPNQKRLTLL 10 Unmodified _VPNQKRLTLL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3720703125 2 591.371872 1180.72919 0.35369 0.00020916 -0.37233 -0.00022019 -0.018645 -1.1026E-05 591.3717050368261 40.455 0.29818 40.46 40.316 40.614 0.0050545 35 13 3 0 0 0 0.010233 2 21544 21544;21648 87.258 41.559 1 9978200 72016 977 48123 49172 83839;83840 83839 0.14605644593802936 VPNQKRLTLL 10 Unmodified _VPNQKRLTLL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5839233398438 3 394.583674 1180.72919 0.8157 0.00032186 0.1037 4.0918E-05 0.9194 0.00036278 394.58373186931317 44.42 0.60934 39.568 39.232 39.841 -4.852 148 47 4 0 0 0 0.13297 3 27042 26916;27042;27174 42.835 11.04 1 252620000 72017 977 48123 49172 83841;83842;83843 83842 0.14605644593802936 VPNQKRLTLL 10 Unmodified _VPNQKRLTLL_ 0 0 0 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.371826171875 2 591.371872 1180.72919 0.46953 0.00027766 -0.075053 -4.4384E-05 0.39447 0.00023328 591.3717658571676 44.381 0.41642 39.529 39.343 39.759 -4.852 70 30 3 0 0 0 0.0015532 2 27139 27001;27139 110.79 38.87 1 48039000 72018 977 48123 49172 83844;83845 83845 0.14605644593802936 VPNQMYWF 8 Unmodified _VPNQMYWF_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7506103515625 2 542.74967 1083.48479 0.41515 0.00022532 3.2997 0.0017909 3.7149 0.0020163 542.7513379199208 74.684 0.24298 74.684 74.56 74.803 0 14 10 2 0 0 0 0.80143 1 41560 41560 5.7604 1.4312 1 470500 + 72019 16944 48124 49173 83846 83846 -0.05361557491642088 VPNQMYWF 8 Unmodified _VPNQMYWF_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.74967 1083.48479 0.41515 0.00022532 3.2997 0.0017909 3.7149 0.0020163 542.7513379199208 74.684 0.24298 74.684 74.56 74.803 0 -0.016416 0.0013985 NaN 5.7604 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 470500 + 72020 16944 48124 49173 -0.05361557491642088 VPNQMYWF 8 Unmodified _VPNQMYWF_ 0 0 0 REV__ENSG00000004399|ENST00000324093|PLXND1 REV__ENSG00000004399|ENST00000324093|PLXND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.74967 1083.48479 0.53035 0.00028785 -0.10887 -5.9087E-05 0.42148 0.00022876 542.7500215245277 75.194 0.22153 74.717 74.559 74.781 -0.47714 0.016416 -0.0023015 NaN 5.7604 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 802120 + 72021 16944 48124 49173 -0.05361557491642088 VPNQVVDYYN 10 Unmodified _VPNQVVDYYN_ 0 0 0 ENSG00000196353|ENST00000429747|CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4;ENST00000514439.1_1_3:131254041-131261643:-|nuORF ENSG00000196353|ENST00000429747|CPNE4 ENSG00000196353|ENST00000429747|CPNE4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1967163085938 3 404.196144 1209.5666 -0.6939 -0.00028047 0.2797 0.00011306 -0.41419 -0.00016741 404.1960918112416 28.621 0.20105 28.621 28.503 28.704 0 26 9 4 0 0 0 0.69385 1 14772 14772 3.5871 0 1 5357200 72022 9803 48125 49174 83847 83847 -0.029797835988347288 VPNQVVDYYN 10 Unmodified _VPNQVVDYYN_ 0 0 0 ENSG00000196353|ENST00000429747|CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4;ENST00000514439.1_1_3:131254041-131261643:-|nuORF ENSG00000196353|ENST00000429747|CPNE4 ENSG00000196353|ENST00000429747|CPNE4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 404.196144 1209.5666 -0.6939 -0.00028047 0.2797 0.00011306 -0.41419 -0.00016741 404.1960918112416 28.621 0.20105 28.621 28.503 28.704 0 0 0 NaN 3.5871 26 9 4 NaN NaN NaN NaN 0 NaN NaN 0 5357200 72023 9803 48125 49174 -0.029797835988347288 VPNQYFFAFI 10 Unmodified _VPNQYFFAFI_ 0 0 0 ENST00000493551.1_1_2:29383269-29390459:+|nuORF ENST00000493551.1_1_2:29383269-29390459:+|nuORF ENST00000493551.1_1_2:29383269-29390459:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.8813171386719 3 415.881608 1244.623 -0.058157 -2.4187E-05 -0.14483 -6.0233E-05 -0.20299 -8.4419E-05 415.88144208313025 31.562 0.20111 31.562 31.418 31.619 0 16 9 2 0 0 0 0.6606 1 16427 16427 3.8763 0 1 1131500 72024 14316 48126 49175 83848 83848 0.010468890284755616 VPNRFYWSV 9 Unmodified _VPNRFYWSV_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.8678894042969 3 389.869703 1166.58728 -0.25712 -0.00010024 -2.7421 -0.0010691 -2.9992 -0.0011693 390.20292258405846 34.633 0.20964 34.442 34.331 34.541 -0.19131 17 9 2 0 0 0 0.37578 1 18112 18112 13.615 8.2122 1 3901500 72025 16109 48127 49176 83849 83849 0.010648515714592577 VPNSAPPR 8 Unmodified _VPNSAPPR_ 0 0 0 nc|ENSG00000165509|Q8TD91-2|MAGEC3 nc|ENSG00000165509|Q8TD91-2|MAGEC3 nc|ENSG00000165509|Q8TD91-2|MAGEC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.2329406738281 2 419.232502 836.450451 NaN NaN NaN NaN NaN NaN NaN 25.217 1 25.217 24.717 25.717 0 0 0 0 0.80403 1 12920 12920 23.148 5.0134 1 72026 16352 48128 49177 83850 83850 0.025683624117505133 VPNSHWQLS 9 Unmodified _VPNSHWQLS_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2681274414062 2 534.267073 1066.51959 0.067368 3.5993E-05 -0.32474 -0.0001735 -0.25737 -0.00013751 534.2671059003283 23.114 0.24339 20.336 20.186 20.429 -2.7784 28 19 2 0 0 0 0.49272 1 12436 12436 7.9102 0.62092 1 6172800 72027 5160 48129 49178 83851 83851 -0.01100598359334981 VPNSHWQLS 9 Unmodified _VPNSHWQLS_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.267073 1066.51959 -0.20661 -0.00011038 0.00078635 4.2012E-07 -0.20582 -0.00010996 534.2669120632306 20.657 0.20661 20.657 20.55 20.757 0 0.14684 -2.4511E-05 NaN 7.9102 31 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1930400 72028 5160 48129 49178 -0.01100598359334981 VPNSHWQLS 9 Unmodified _VPNSHWQLS_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 534.267073 1066.51959 -0.41061 -0.00021938 0.19212 0.00010264 -0.2185 -0.00011673 534.2670980702582 20.509 0.18774 20.538 20.455 20.643 0.028357 0.027452 0.00017993 NaN 7.9102 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1032400 72029 5160 48129 49178 -0.01100598359334981 VPNSHWQLS 9 Unmodified _VPNSHWQLS_ 0 0 0 nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 nc|ENSG00000139505|Q9Y217-2|MTMR6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 534.267073 1066.51959 0.067368 3.5993E-05 -0.32474 -0.0001735 -0.25737 -0.00013751 534.2671059003283 23.114 0.24339 20.336 20.186 20.429 -2.7784 -0.17429 -0.00037235 NaN 7.9102 28 19 2 NaN NaN NaN NaN 0 NaN NaN 0 6172800 72030 5160 48129 49178 -0.01100598359334981 VPNSNPPEY 9 Unmodified _VPNSNPPEY_ 0 0 0 nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENST00000494718.5_1_X:51643260-51645023:+|nuORF nc|ENSG00000102316|Q9UNF1-2|MAGED2 nc|ENSG00000102316|Q9UNF1-2|MAGED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7362365722656 2 508.737814 1015.46108 -0.29986 -0.00015255 -0.16615 -8.4527E-05 -0.46601 -0.00023708 508.7381616169754 28.712 0.51813 28.712 28.483 29.002 0 35 25 2 0 0 0 0.013041 1 14790 14790 71.922 29.828 1 2655600 72031 2036 48130 49179 83852 83852 -0.046036997244755185 VPNSSQGFVF 10 Unmodified _VPNSSQGFVF_ 0 0 0 REV__nc|ENSG00000124789|P49790-2|NUP153 REV__nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2689819335938 2 541.269281 1080.52401 0.45483 0.00024619 -1.0334 -0.00055936 -0.5786 -0.00031318 541.2688329313143 62.577 0.33165 62.09 61.894 62.226 -0.48764 20 15 2 0 0 0 0.44373 1 34110 34110 19.257 1.122 1 2752300 + 72032 19472 48131 49180 83853 83853 -0.01303133936426093 VPNSSQGFVF 10 Unmodified _VPNSSQGFVF_ 0 0 0 REV__nc|ENSG00000124789|P49790-2|NUP153 REV__nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2704467773438 2 541.269281 1080.52401 0.70922 0.00038388 -0.89367 -0.00048372 -0.18445 -9.9838E-05 541.2691080081081 71.635 0.33862 71.674 71.511 71.85 0.039024 32 15 3 0 0 0 0.24625 1 39430 39430 30.637 3.0077 1 5084200 + 72033 19472 48131 49180 83854 83854 -0.01303133936426093 VPNSSQLDFL 10 Unmodified _VPNSSQLDFL_ 0 0 0 ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2872924804688 2 560.287671 1118.56079 0.74623 0.00041811 -0.077079 -4.3187E-05 0.66915 0.00037492 560.2868966313555 44.832 0.20243 39.98 39.851 40.053 -4.852 16 13 2 0 0 0 0.14923 1 27461 27461 39.95 0 1 9664800 72034 6792 48132 49181 83855 83855 0.0062511788946721936 VPNWHRDLV 9 Unmodified _VPNWHRDLV_ 0 0 0 ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.2051696777344 3 379.205085 1134.59343 -0.037915 -1.4377E-05 0.31659 0.00012005 0.27868 0.00010568 379.2051468926566 39.658 0.25284 39.361 39.197 39.45 -0.29716 22 11 3 0 0 0 0.2324 1 20901 20901 24.882 15.338 1 5170100 72035 4395 48133 49182 83856 83856 0.031513698029812076 VPNWHRDLV 9 Unmodified _VPNWHRDLV_ 0 0 0 ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.2056274414062 3 379.205085 1134.59343 0.25625 9.717E-05 1.517 0.00057525 1.7732 0.00067242 379.2052286033638 39.282 0.35739 39.294 39.152 39.509 0.011452 32 16 3 0 0 0 0.50598 1 20896 20896 10.899 6.7095 1 3038200 72036 4395 48133 49182 83857 83857 0.031513698029812076 VPNWHRDLV 9 Unmodified _VPNWHRDLV_ 0 0 0 ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.2054138183594 3 379.205085 1134.59343 1.0237 0.00038818 0.37206 0.00014109 1.3957 0.00052926 379.2052672419109 43.99 0.36181 39.225 39.019 39.381 -4.7648 81 23 4 0 0 0 0.34134 1 26841 26841 10.899 1.355 1 33351000 72037 4395 48133 49182 83858 83858 0.031513698029812076 VPNYTDYYF 9 Unmodified _VPNYTDYYF_ 0 0 0 REV__ENST00000555521.1_1_14:47343236-47389373:-|nuORF REV__ENST00000555521.1_1_14:47343236-47389373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.260986328125 2 591.261122 1180.50769 0.45618 0.00026972 -0.39367 -0.00023276 0.062515 3.6963E-05 591.2609038631944 90.252 0.41697 89.751 89.567 89.984 -0.50171 38 19 3 0 0 0 0.58466 1 49296 49296 2.3027 0 1 1404000 + 72038 20439 48134 49183 83859 83859 -0.07534259893213857 VPNYYEVSAL 10 Unmodified _VPNYYEVSAL_ 0 0 0 REV__nc|ENSG00000146021|Q9UH77-3|KLHL3 REV__nc|ENSG00000146021|Q9UH77-3|KLHL3 MSMS AL20221201_MKP_PDAC_01 4 385.5611267089844 3 385.529123 1153.56554 NaN NaN NaN NaN NaN NaN NaN 46.299 1 41.254 40.754 41.754 -5.0449 0 0 0 0.83398 1 28571 28571 6.1918 1.4759 1 + 72039 20806 48135 49184 83860 83860 -0.0050999796776523 VPPAINQFTQ 10 Unmodified _VPPAINQFTQ_ 0 0 0 ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENST00000473913.1_1_16:86559246-86559468:+|nuORF;ENST00000485706.5_1_9:136216467-136216912:+|nuORF;ENST00000434317.1_1_7:102395625-102396051:+|nuORF ENSG00000148303|ENST00000323345|RPL7A ENSG00000148303|ENST00000323345|RPL7A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.5076599121094 3 372.201229 1113.58186 1.4116 0.00052541 -0.32572 -0.00012123 1.0859 0.00040418 372.20115505548046 41.543 0.63909 36.936 36.772 37.412 -4.6079 47 41 2 0 0 0 0.23952 1 24871 24871 0.50596 0 1 31481000 72040 5914 48136 49185 83861 83861 0.029611279890104925 VPPASPKT 8 Unmodified _VPPASPKT_ 0 0 0 nc|ENSG00000186472|Q9Y6V0-6|PCLO;ENSG00000186472|ENST00000333891|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO nc|ENSG00000186472|Q9Y6V0-6|PCLO MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.1839294433594 2 398.731803 795.449054 1.0461 0.00041713 3.1045 0.0012379 4.1507 0.001655 398.73298098089765 46.902 0.20445 46.869 46.733 46.938 -0.033421 14 9 2 0 0 0 8.7369 1 25228 25228 5.7604 1.0044 1 1401600 72041 9478 48137 49186 83862 83862 0.04314728322992778 VPPAVTGITF 10 Unmodified _VPPAVTGITF_ 0 0 0 nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA nc|ENSG00000149925|P04075|ALDOA nc|ENSG00000149925|P04075|ALDOA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2146911621094 2 501.286943 1000.55933 0.41845 0.00020977 1.753 0.00087878 2.1715 0.0010885 501.2877688825399 73.923 0.60751 73.447 73.187 73.794 -0.47588 41 27 2 0 0 0 0.20941 1 40515 40515 26.884 6.43 1 884230 72042 6042 48138 49187 83863 83863 0.05907528591365008 VPPCCWPHC 9 Unmodified _VPPCCWPHC_ 0 0 0 ENST00000255784.5_1_22:42222143-42222275:+|nuORF ENST00000255784.5_1_22:42222143-42222275:+|nuORF ENST00000255784.5_1_22:42222143-42222275:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1041.254272460938 1 1041.41032 1040.40305 0.34092 0.00035504 0.43711 0.00045521 0.77803 0.00081024 1041.4100201935782 35.261 0.12281 35.289 35.186 35.309 0.027401 7 5 2 0 0 0 0.62242 1 18585 18585 0 0 1 2734400 72043 11173 48139 49188 83864 83864 -0.11553699446744758 VPPCLRVSML 10 Unmodified _VPPCLRVSML_ 0 0 0 REV__ENSG00000167701|ENST00000394955|GPT REV__ENSG00000167701|ENST00000394955|GPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.2074584960938 3 372.208562 1113.60386 1.6705 0.00062178 -0.64981 -0.00024187 1.0207 0.00037991 372.2081052210673 42.594 0.22666 37.909 37.845 38.072 -4.6846 17 14 2 0 0 0 0.60623 1 25768 25768 6.1918 0 1 7263900 + 72044 22244 48140 49189 83865 83865 0.05159893141558314 VPPDLRTEL 9 Unmodified _VPPDLRTEL_ 0 0 0 ENSG00000115232|ENST00000397033|ITGA4;ENST00000465522.5_1_2:182322141-182350724:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 ENSG00000115232|ENST00000397033|ITGA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2687377929688 2 520.292756 1038.57096 0.55269 0.00028756 1.0927 0.00056852 1.6454 0.00085608 520.2933265639447 67.37 0.23354 67.37 67.271 67.505 0 14 9 2 0 0 0 0.21302 1 37612 37612 5.7319 1.7875 1 699230 72045 3099 48141 49190 83866 83866 0.053217256147036096 VPPEEINYL 9 Unmodified _VPPEEINYL_ 0 0 0 ENSG00000067064|ENST00000381344|IDI1;nc|ENSG00000067064|Q13907|IDI1;ENST00000435551.1_1_2:139065056-139065290:+|nuORF ENSG00000067064|ENST00000381344|IDI1 ENSG00000067064|ENST00000381344|IDI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2794189453125 2 537.279315 1072.54408 0.40219 0.00021609 1.5638 0.00084021 1.966 0.0010563 537.2802107998899 68.301 0.29275 68.301 68.146 68.439 0 23 13 2 0 0 0 0.39863 1 38067 38067 12.532 4.6214 1 537730 72046 947 48142 49191 83867 83867 0.010706170035291507 VPPEPTPNE 9 Unmodified _VPPEPTPNE_ 0 0 0 REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 REV__nc|ENSG00000143382|Q6UY14-2|ADAMTSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.1844482421875 1 979.473103 978.465826 0.30037 0.0002942 0.028546 2.796E-05 0.32892 0.00032216 979.4732451467135 66.583 0.18832 66.583 66.491 66.679 0 12 8 2 0 0 0 0.49272 1 37118 37118 7.9102 2.6795 1 999840 + 72047 20633 48143 49192 83868 83868 -0.024268155817139814 VPPEVAQQY 9 Unmodified _VPPEVAQQY_ 0 0 0 nc|ENSG00000132024|Q6P1N0-2|CC2D1A;ENSG00000132024|ENST00000318003|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A nc|ENSG00000132024|Q6P1N0-2|CC2D1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7645263671875 2 515.763832 1029.51311 0.71787 0.00037025 -0.68222 -0.00035186 0.035652 1.8388E-05 515.7634926715964 36.54 0.6286 36.54 36.269 36.897 0 64 30 3 0 0 0 0.08691 2 19264 19264;19384 36.127 14.38 1 4945300 72048 4369 48144 49193 83869;83870 83869 -0.00046536310719602625 VPPGICGI 8 Unmodified _VPPGICGI_ 0 0 0 chr2:119441599-119461847|40|10.07|0.08|7.01|-|1|SCTR,SCTR|1 chr2:119441599-119461847|40|10.07|0.08|7.01|-|1|SCTR,SCTR|1 chr2:119441599-119461847|40|10.07|0.08|7.01|-|1|SCTR,SCTR|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2092590332031 2 378.20965 754.404746 NaN NaN NaN NaN NaN NaN NaN 36.034 1 36.034 35.534 36.534 0 0 0 0 0.9706 1 19089 19089 6.3541 0 1 72049 104 48145 49194 83871 83871 0.017720009051686247 VPPGMESL 8 Unmodified _VPPGMESL_ 0 0 0 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.5225219726562 2 415.209847 828.40514 NaN NaN NaN NaN NaN NaN NaN 28.135 1 28.135 27.635 28.635 0 0 0 0 0.97444 1 14521 14521 2.8892 0 1 72050 1936 48146 49195 83872 83872 -0.015926241656416096 VPPGVLYDV 9 Unmodified _VPPGVLYDV_ 0 0 0 ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000565793.5_1_15:79069566-79092863:-|nuORF;ENST00000568712.1_1_15:79063704-79103562:-|nuORF ENSG00000136378|ENST00000388820|ADAMTS7 ENSG00000136378|ENST00000388820|ADAMTS7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.53564453125 1 958.52441 957.517133 -0.029398 -2.8179E-05 -0.59371 -0.00056908 -0.6231 -0.00059726 958.5235409186793 76.874 0.54369 76.874 76.541 77.085 0 66 32 3 0 0 0 0.46577 1 42606 42606 9.3474 3.587 1 7315500 72051 4817 48147 49196 83873 83873 0.036675531829814645 VPPHPRHYPL 10 Unmodified _VPPHPRHYPL_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8919982910156 3 404.89273 1211.65636 -0.42598 -0.00017248 -2.1822 -0.00088356 -2.6082 -0.001056 404.8918939656778 19.84 0.1199 19.868 19.801 19.921 0.028357 8 6 2 0 0 0 0.70951 1 10016 10016 0.77653 0.078866 1 703760 72052 16188 48148 49197 83874 83874 0.0589993559103732 VPPIPLVPR 9 Unmodified _VPPIPLVPR_ 0 0 0 REV__ENSG00000120149|ENST00000239243|MSX2 REV__ENSG00000120149|ENST00000239243|MSX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3210144042969 2 494.32112 986.627687 0.62961 0.00031123 -0.64652 -0.00031959 -0.016908 -8.3579E-06 494.3205753767063 50.904 0.1947 50.85 50.747 50.942 -0.053871 15 9 2 0 0 0 0.12841 1 27539 27539 30.225 2.0516 1 1376400 + 72053 19229 48149 49198 83875 83875 0.13383817961903333 VPPIRSLMSPL 11 Unmodified _VPPIRSLMSPL_ 0 0 0 REV__ENSG00000116254|ENST00000262450|CHD5 REV__ENSG00000116254|ENST00000262450|CHD5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.905029296875 3 403.905648 1208.69511 -0.28328 -0.00011442 -0.85616 -0.00034581 -1.1394 -0.00046023 403.90526244617234 54.117 0.28021 54.05 53.882 54.162 -0.066936 42 13 4 0 0 0 0.54936 1 29340 29340 10.899 0 1 19987000 + 72054 19033 48150 49199 83876 83876 0.09911480110531556 VPPKVTTT 8 Unmodified _VPPKVTTT_ 0 0 0 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 ENSG00000113249|ENST00000523175|HAVCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.7501525878906 2 421.752736 841.490919 NaN NaN NaN NaN NaN NaN NaN 77.008 1 77.008 76.508 77.508 0 0 0 0 0.97444 1 42812 42812 0.69038 0 1 72055 2949 48151 49200 83877 83877 0.06383284011508294 VPPLSWLDLK 10 Unmodified _VPPLSWLDLK_ 0 0 0 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.897216796875 3 389.897258 1166.66995 0.19141 7.4629E-05 -0.2765 -0.00010781 -0.085092 -3.3177E-05 389.89713289251165 61.436 0.26132 61.404 61.271 61.532 -0.032787 20 12 2 0 0 0 0.5933 1 33546 33546 7.0371 0 1 3698300 + 72056 20086 48152 49201 83878 83878 0.09327748579585204 VPPLTTLGI 9 Unmodified _VPPLTTLGI_ 0 0 0 REV__ENSG00000135723|ENST00000258201|FHOD1 REV__ENSG00000135723|ENST00000258201|FHOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.5601196289062 1 910.560795 909.553519 0.038658 3.52E-05 0.018015 1.6403E-05 0.056672 5.1604E-05 910.5609984127641 75.938 0.47763 75.461 75.235 75.712 -0.47714 39 20 2 0 0 0 0.28047 1 41495 41495 18.135 1.1927 1 1744600 + 72057 20093 48153 49202 83879 83879 0.09512430079701062 VPPMPVIC 8 Unmodified _VPPMPVIC_ 0 0 0 nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 nc|ENSG00000155090|Q13118-2|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 857.4523315429688 1 855.446694 854.439417 0.026916 2.3025E-05 0.60839 0.00052045 0.63531 0.00054347 855.4469682240291 62.74 0.28164 62.74 62.589 62.87 0 25 11 3 0 0 0 0.80975 1 35026 35026 0.79363 0 1 1917500 72058 6367 48154 49203 83880 83880 0.006375007216092854 VPPNCMFF 8 Unmodified _VPPNCMFF_ 0 0 0 nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-8|SON nc|ENSG00000159140|P18583-8|SON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7142639160156 2 477.714242 953.413931 NaN NaN NaN NaN NaN NaN NaN 66.866 1 66.866 66.366 67.366 0 0 0 0 0.9706 1 37293 37293 6.3541 0 1 72059 16310 48155 49204 83881 83881 -0.06463973800816802 VPPPLPLALY 10 Unmodified _VPPPLPLALY_ 0 0 0 ENST00000223129.8_1_7:7680146-7680452:-|nuORF ENST00000223129.8_1_7:7680146-7680452:-|nuORF ENST00000223129.8_1_7:7680146-7680452:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 539.7935180664062 2 540.328611 1078.64267 0.73938 0.00039951 -3.9378 -0.0021277 -3.1985 -0.0017282 540.3260974242303 49.795 0.35934 44.255 44.065 44.424 -5.5391 36 22 2 0 0 0 0.23489 1 31092 31092 7.9102 4.3137 1 23546000 72060 11043 48156 49205 83882 83882 0.1064926503922834 VPPPLSRVVPF 11 Unmodified _VPPPLSRVVPF_ 0 0 0 REV__ENSG00000177354|ENST00000374144|C10orf71 REV__ENSG00000177354|ENST00000374144|C10orf71 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3653564453125 2 604.363516 1206.71248 NaN NaN NaN NaN NaN NaN NaN 101.03 1 100.99 100.49 101.49 -0.04216 0 0 0 0.9385 1 56126 56126 3.5965 1.2938 1 + 72061 22979 48157 49206 83883 83883 0.11739143707836774 VPPPPAAL 8 Unmodified _VPPPPAAL_ 0 0 0 ENSG00000162104|ENST00000294016|ADCY9;ENST00000574721.1_1_16:4033231-4033492:-|nuORF ENSG00000162104|ENST00000294016|ADCY9;REV__nc|ENSG00000121410|P04217-2|A1BG ENSG00000162104|ENST00000294016|ADCY9 MSMS AL20221201_MKP_PDAC_01 4 381.2322692871094 2 381.231439 760.448326 NaN NaN NaN NaN NaN NaN NaN 24.639 1 21.756 21.256 22.256 -2.8831 0 0 0 0.97444 1 13429 13429 2.8892 0 1 72062 6835;19293 48158 49207 83884 83884 0.05851933673943677 VPPPPHQAL 9 Unmodified _VPPPPHQAL_ 0 0 0 ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF ENST00000540486.5_1_17:7833707-7833791:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.26953125 2 478.271627 954.528701 0.56955 0.0002724 -0.039798 -1.9034E-05 0.52975 0.00025336 478.271520956117 46.296 0.58506 41.278 40.935 41.52 -5.0185 143 43 4 0 0 0 0.087258 3 28352 28352;28495;28633 36.044 9.7029 1 699650000 72063 15031 48159 49208 83885;83886;83887 83885 0.04961794996984281 VPPPPSGM 8 Unmodified _VPPPPSGM_ 0 0 0 REV__ENSG00000110427|ENST00000658780|KIAA1549L REV__ENSG00000110427|ENST00000658780|KIAA1549L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.8660888671875 2 391.199282 780.384011 NaN NaN NaN NaN NaN NaN NaN 71.507 1 71.029 70.529 71.529 -0.47735 0 0 0 0.97444 1 39136 39136 0.79363 0 1 + 72064 18708 48160 49209 83888 83888 -0.014965894744932484 VPPPWPLDKI 10 Unmodified _VPPPWPLDKI_ 0 0 0 REV__nc|ENSG00000138606|Q7M4L6|SHF REV__nc|ENSG00000138606|Q7M4L6|SHF MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8940734863281 3 387.893737 1160.65938 1.4904 0.00057813 -0.17881 -6.9359E-05 1.3116 0.00050877 387.8934477564491 94.003 0.11116 87.828 87.769 87.88 -6.1757 8 5 2 0 0 0 0.56348 1 62276 62276 7.9454 4.3583 1 5908200 + 72065 20342 48161 49210 83889 83889 0.0854776592516373 VPPQAPFGY 9 Unmodified _VPPQAPFGY_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.7517700195312 2 488.25036 974.486168 0.75388 0.00036808 0.73151 0.00035716 1.4854 0.00072525 488.25101673023534 47.664 0.33782 47.664 47.537 47.875 0 34 15 3 0 0 0 0.18118 1 26079 26079 18.135 4.6271 1 6153900 72066 5318 48162 49211 83890 83890 -0.0020960013124522447 VPPQRYWHPNW 11 Unmodified _VPPQRYWHPNW_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.9145202636719 3 493.914194 1478.72075 0.51428 0.00025401 -0.79371 -0.00039202 -0.27942 -0.00013801 493.91372851877657 54.998 0.3746 54.93 54.783 55.158 -0.068741 77 18 6 0 0 0 0.65108 2 29839 29839;29938 14.218 11.587 1 72884000 + 72067 24460 48163 49212 83891;83892 83891 0.0005409067719028826 VPPQRYWHPNW 11 Unmodified _VPPQRYWHPNW_ 0 0 0 REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF REV__ENST00000482108.1_2_7:94293788-94294991:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 740.8683471679688 2 740.367653 1478.72075 0.44843 0.00033201 -1.3225 -0.00097911 -0.87404 -0.00064711 740.366583728168 54.997 0.2353 54.929 54.841 55.076 -0.068737 21 11 2 0 0 0 0.65108 1 29889 29889 8.7454 3.4485 1 5441500 + 72068 24460 48163 49212 83893 83893 0.0005409067719028826 VPPRIVLLILK 11 Unmodified _VPPRIVLLILK_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MSMS AL20221201_MKP_PDAC_01 4 630.9424438476562 2 630.941934 1259.86931 NaN NaN NaN NaN NaN NaN NaN 44.846 1 39.994 39.494 40.494 -4.852 0 0 0 0.94144 1 27428 27428 1.4819 0 1 + 72069 19051 48164 49213 83894 83894 0.24977428598162987 VPPRRQLY 8 Unmodified _VPPRRQLY_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 514.2999877929688 2 514.803626 1027.5927 1.0223 0.00052628 -0.88693 -0.0004566 0.13536 6.9686E-05 514.8027955856437 81.258 0.28766 75.083 74.98 75.267 -6.1757 25 16 2 0 0 0 8.7369 1 53350 53350 11.114 0.93107 1 17893000 72070 1354 48165 49214 83895 83895 0.08000575153960199 VPPSEAQLDL 10 Unmodified _VPPSEAQLDL_ 0 0 0 REV__ENSG00000167646|ENST00000524407|DNAAF3 REV__ENSG00000167646|ENST00000524407|DNAAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7821655273438 2 534.782222 1067.54989 0.28413 0.00015195 0.12537 6.7044E-05 0.4095 0.00021899 534.7823411389768 87.523 0.47148 87.523 87.244 87.715 0 42 21 3 0 0 0 0.69064 1 48520 48520 3.9444 0 1 1544700 + 72071 22234 48166 49215 83896 83896 0.01881715515196447 VPPTFFWP 8 Unmodified _VPPTFFWP_ 0 0 0 ENST00000495068.5_1_15:91478554-91479518:+|nuORF;ENST00000557212.5_1_15:91478554-91479518:+|nuORF ENST00000495068.5_1_15:91478554-91479518:+|nuORF ENST00000495068.5_1_15:91478554-91479518:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7559204101562 2 495.757821 989.501089 NaN NaN NaN NaN NaN NaN NaN 23.797 1 23.818 23.318 24.318 0.021185 0 0 0 0.93066 1 12263 12263 14.582 2.0501 1 72072 14347 48167 49216 83897 83897 0.005918917367466747 VPPTFFWP 8 Unmodified _VPPTFFWP_ 0 0 0 ENST00000495068.5_1_15:91478554-91479518:+|nuORF;ENST00000557212.5_1_15:91478554-91479518:+|nuORF ENST00000495068.5_1_15:91478554-91479518:+|nuORF ENST00000495068.5_1_15:91478554-91479518:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.3026428222656 2 495.757821 989.501089 NaN NaN NaN NaN NaN NaN NaN 23.828 1 23.85 23.35 24.35 0.021185 0 0 0 0.97444 1 12280 12280 5.2307 0.47466 1 72073 14347 48167 49216 83898 83898 0.005918917367466747 VPPVDPHSL 9 Unmodified _VPPVDPHSL_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-3|CLEC16A;ENST00000261657.5_1_16:11260358-11272544:+|nuORF ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.7663879394531 2 480.761092 959.507631 0.52367 0.00025176 1.5644 0.00075212 2.0881 0.0010039 480.76158516748836 27.904 0.61577 24.756 24.526 25.142 -3.1482 81 32 4 0 0 0 0.023164 1 15647 15647 60.39 5.616 1 387600000 72074 638 48168 49217 83899 83899 0.026257848974637454 VPPVFVVSY 9 Unmodified _VPPVFVVSY_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2846374511719 2 503.784036 1005.55352 0.4668 0.00023517 0.87769 0.00044217 1.3445 0.00067733 503.7849717673584 80.296 0.60497 79.806 79.454 80.059 -0.48933 49 23 3 0 0 0 0.034897 2 43916 43916;44014 52.693 24.52 1 1101100 72075 5345 48169 49218 83900;83901 83900 0.05096430079720449 VPPVFVVSY 9 Unmodified _VPPVFVVSY_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7842712402344 2 503.784036 1005.55352 1.0312 0.0005195 -0.063253 -3.1866E-05 0.96795 0.00048764 503.78401115727667 87.415 0.65652 81.24 80.895 81.551 -6.1757 76 35 3 0 0 0 0.034897 1 57627 57627 52.693 9.7251 1 46304000 72076 5345 48169 49218 83902 83902 0.05096430079720449 VPPVFVVSY 9 Unmodified _VPPVFVVSY_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7814025878906 2 503.784036 1005.55352 1.3985 0.00070456 -3.2855 -0.0016552 -1.8869 -0.0009506 503.7818742137104 90.68 0.35423 84.504 84.29 84.644 -6.1757 40 20 3 0 0 0 0.034897 1 59876 59876 52.693 9.7251 1 17852000 72077 5345 48169 49218 83903 83903 0.05096430079720449 VPQAPTGPA 9 Unmodified _VPQAPTGPA_ 0 0 0 REV__ENST00000566843.1_1_15:75631960-75632245:+|nuORF REV__ENST00000566843.1_1_15:75631960-75632245:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.443115234375 1 837.446494 836.439217 -0.0057168 -4.7875E-06 -1.5296 -0.001281 -1.5354 -0.0012858 837.4452510116929 79.069 0.37154 79.069 78.809 79.181 0 29 17 2 0 0 0 0.1773 1 43925 43925 25.399 0 1 1687500 + 72078 20462 48170 49219 83904 83904 0.014455403176157233 VPQAPTGPA 9 Unmodified _VPQAPTGPA_ 0 0 0 REV__ENST00000566843.1_1_15:75631960-75632245:+|nuORF REV__ENST00000566843.1_1_15:75631960-75632245:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 837.446494 836.439217 -0.0057168 -4.7875E-06 -1.5296 -0.001281 -1.5354 -0.0012858 837.4452510116929 79.069 0.37154 79.069 78.809 79.181 0 0.0054699 -0.00071733 NaN 25.399 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1687500 + 72079 20462 48170 49219 0.014455403176157233 VPQAQPPM 8 Unmodified _VPQAQPPM_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.4379272460938 1 867.4393 866.432024 -0.4753 -0.00041229 0.8506 0.00073784 0.3753 0.00032555 867.440305702608 33.758 0.23055 33.758 33.633 33.864 0 21 11 2 0 0 0 0.24071 1 17685 17685 63.563 25.412 1 4239200 72080 2590 48171 49220 83905 83905 -0.006535155544611371 VPQAQPPM 8 Unmodified _VPQAQPPM_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2227172851562 2 434.223288 866.432024 -0.41726 -0.00018118 -0.21196 -9.2037E-05 -0.62922 -0.00027322 434.2231947964719 33.744 0.24692 33.744 33.617 33.864 0 33 12 3 0 0 0 0.44122 1 17699 17699 40.449 3.9824 1 7414900 72081 2590 48171 49220 83906 83906 -0.006535155544611371 VPQAQPPM 8 Unmodified _VPQAQPPM_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2237548828125 2 434.223288 866.432024 -0.49481 -0.00021486 0.55941 0.00024291 0.064596 2.8049E-05 434.2233355626822 33.981 0.23977 33.981 33.864 34.103 0 20 11 2 0 0 0 0.44122 1 17830 17830 40.449 12.275 1 11995000 72082 2590 48171 49220 83907 83907 -0.006535155544611371 VPQAQPPM 8 Unmodified _VPQAQPPM_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.4407958984375 1 867.4393 866.432024 -0.55045 -0.00047748 0.029274 2.5394E-05 -0.52117 -0.00045209 867.4401012855163 33.999 0.20106 33.999 33.864 34.065 0 21 9 3 0 0 0 0.24071 1 17899 17899 63.563 20.595 1 4399500 72083 2590 48171 49220 83908 83908 -0.006535155544611371 VPQAQPPM 8 Unmodified _VPQAQPPM_ 0 0 0 nc|ENSG00000108604|Q92925-3|SMARCD2;ENSG00000108604|ENST00000448276|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 nc|ENSG00000108604|Q92925-3|SMARCD2 MSMS AL20221201_MKP_PDAC_01 4 434.2235107421875 2 434.223288 866.432024 NaN NaN NaN NaN NaN NaN NaN 39.127 1 34.676 34.176 35.176 -4.4509 0 0 0 0.63034 1 23180 23180 32.117 3.9437 1 72084 2590 48171 49220 83909 83909 -0.006535155544611371 VPQDGDFDFV 10 Unmodified _VPQDGDFDFV_ 0 0 0 ENST00000520440.1_1_8:99538957-99560377:-|nuORF ENST00000520440.1_1_8:99538957-99560377:-|nuORF ENST00000520440.1_1_8:99538957-99560377:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1737060546875 3 380.173228 1137.49785 NaN NaN NaN NaN NaN NaN NaN 63.1 1 63.1 62.6 63.6 0 0 0 0 0.9997 1 35200 35200 0.69767 0.42865 1 72085 14729 48172 49221 83910 83910 -0.06539447898580875 VPQDTKLVL 9 Unmodified _VPQDTKLVL_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.8052673339844 2 506.8055 1011.59645 0.88405 0.00044804 -0.33609 -0.00017033 0.54796 0.00027771 506.80521638624754 47.63 0.46829 47.63 47.362 47.831 0 50 21 3 0 0 0 0.025842 2 26103 25995;26103 57.722 13.864 1 6762000 72086 1017 48173 49222 83911;83912 83912 0.09111200137124342 VPQDTKLVL 9 Unmodified _VPQDTKLVL_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.275146484375 2 506.8055 1011.59645 0.98758 0.00050051 -0.90002 -0.00045614 0.087554 4.4373E-05 506.80513657122094 52.881 0.34331 47.077 46.891 47.234 -5.8042 23 18 2 0 0 0 0.087822 1 33320 33320 36.506 3.7205 1 20227000 72087 1017 48173 49222 83913 83913 0.09111200137124342 VPQDTKLVL 9 Unmodified _VPQDTKLVL_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.8055 1011.59645 0.24011 0.00012169 0.5122 0.00025959 0.75231 0.00038127 506.8055641573366 47.746 0.33197 47.393 47.223 47.555 -0.3526 -0.11858 0.00063345 NaN 57.722 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1987300 72088 1017 48173 49222 0.09111200137124342 VPQEEVPVY 9 Unmodified _VPQEEVPVY_ 0 0 0 nc|ENSG00000170473|Q9BRP8-2|PYM1;ENSG00000170473|ENST00000408946|PYM1 nc|ENSG00000170473|Q9BRP8-2|PYM1 nc|ENSG00000170473|Q9BRP8-2|PYM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.271728515625 2 530.27149 1058.52843 0.84963 0.00045053 0.030594 1.6223E-05 0.88022 0.00046676 530.2714111414095 47.633 0.34011 47.633 47.427 47.767 0 41 15 3 0 0 0 0.032796 2 26032 26032;26142 53.833 21.527 1 10616000 72089 7992 48174 49223 83914;83915 83914 0.0015033048648547265 VPQEEVPVY 9 Unmodified _VPQEEVPVY_ 0 0 0 nc|ENSG00000170473|Q9BRP8-2|PYM1;ENSG00000170473|ENST00000408946|PYM1 nc|ENSG00000170473|Q9BRP8-2|PYM1 nc|ENSG00000170473|Q9BRP8-2|PYM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2721557617188 2 530.27149 1058.52843 1.1024 0.00058456 -0.57922 -0.00030715 0.52315 0.00027741 530.271939373768 55.078 0.37669 49.157 48.94 49.317 -5.9211 44 23 2 0 0 0 0.044011 1 35045 35045 47.749 22.349 1 22562000 72090 7992 48174 49223 83916 83916 0.0015033048648547265 VPQFRLLF 8 Unmodified _VPQFRLLF_ 0 0 0 REV__ENST00000424241.1_1_X:65220594-65220756:+|nuORF REV__ENST00000424241.1_1_X:65220594-65220756:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3055114746094 2 510.30547 1018.59639 0.22673 0.0001157 -0.046785 -2.3875E-05 0.17995 9.1829E-05 510.3054636954974 87.706 0.34359 87.759 87.586 87.929 0.053352 24 14 2 0 0 0 0.44122 1 48742 48742 40.449 0.49126 1 32066000 + 72091 26876 48175 49224 83917 83917 0.08783244927815304 VPQKTIQEM 9 Oxidation (M) _VPQKTIQEM(Oxidation (M))_ VPQKTIQEM(1) VPQKTIQEM(110) 0 0 1 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2841796875 2 545.284074 1088.5536 0.6532 0.00035618 -0.037675 -2.0544E-05 0.61552 0.00033563 545.2841414017529 18.572 0.41847 15.951 15.755 16.173 -2.6215 96 42 3 0 0 0 0.0087807 1 9807 9807 106.94 59.191 1 4230200 72092 4211 48176 49225 83918 83918 746 0.012860620174024007 VPQKTIQEM 9 Unmodified _VPQKTIQEM_ 0 0 0 ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF;nc|ENSG00000130402|O43707-2|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 ENSG00000130402|ENST00000252699|ACTN4 MSMS AL20221201_MKP_PDAC_01 4 537.2881469726562 2 537.286617 1072.55868 NaN NaN NaN NaN NaN NaN NaN 30.6 1 27.103 26.603 27.603 -3.497 0 0 0 0.019104 1 17287 17287 79.596 47.291 1 72093 4211 48176 49226 83919 83919 0.02530365880033969 VPQLRQPY 8 Unmodified _VPQLRQPY_ 0 0 0 ENSG00000128591|ENST00000325888|FLNC;FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant ENSG00000128591|ENST00000325888|FLNC ENSG00000128591|ENST00000325888|FLNC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7303771972656 2 500.782359 999.550165 -0.078739 -3.9431E-05 -1.0749 -0.00053828 -1.1536 -0.00057771 500.7816718953531 39.947 0.24699 39.65 39.512 39.759 -0.29716 23 11 3 0 0 0 8.7369 1 21102 21102 13.508 0.97634 1 5534000 72094 4073 48177 49227 83920 83920 0.05037180025703947 VPQPHLPF 8 Unmodified _VPQPHLPF_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7609558105469 2 467.760895 933.507237 0.02165 1.0127E-05 -1.4533 -0.00067982 -1.4317 -0.00066969 467.76000092355974 70.08 0.44118 69.601 69.472 69.914 -0.47903 38 23 2 0 0 0 0.74163 1 38286 38286 13.508 0 1 3504200 + 72095 23295 48178 49228 83921 83921 0.037824099682893575 VPQPHLPF 8 Unmodified _VPQPHLPF_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.7601928710938 2 467.760895 933.507237 0.28918 0.00013527 -0.54141 -0.00025325 -0.25222 -0.00011798 467.76048693653127 69.606 0.33185 69.637 69.514 69.846 0.030914 26 16 2 0 0 0 0.74163 1 38298 38298 13.508 0 1 3522100 + 72096 23295 48178 49228 83922 83922 0.037824099682893575 VPQPHLPF 8 Unmodified _VPQPHLPF_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 467.760895 933.507237 0.02165 1.0127E-05 -1.4533 -0.00067982 -1.4317 -0.00066969 467.76000092355974 70.08 0.44118 69.601 69.472 69.914 -0.47903 -0.01827 -0.00060418 NaN 13.508 38 23 2 NaN NaN NaN NaN 0 NaN NaN 0 3504200 + 72097 23295 48178 49228 0.037824099682893575 VPQPHLPF 8 Unmodified _VPQPHLPF_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 467.760895 933.507237 0.28918 0.00013527 -0.54141 -0.00025325 -0.25222 -0.00011798 467.76048693653127 69.606 0.33185 69.637 69.514 69.846 0.030914 0.01827 0.00024895 NaN 13.508 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 3522100 + 72098 23295 48178 49228 0.037824099682893575 VPQPKEVF 8 Unmodified _VPQPKEVF_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2650756835938 2 472.26601 942.517468 0.65603 0.00030982 0.30638 0.00014469 0.96241 0.00045451 472.26597625042325 67.68 0.29491 67.198 67.096 67.391 -0.48218 22 12 2 0 0 0 0.5953 1 37000 37000 26.341 11.76 1 923430 + 72099 23082 48179 49229 83923 83923 0.04390972902854173 VPQPNITWL 9 Unmodified _VPQPNITWL_ 0 0 0 ENSG00000156218|ENST00000286744|ADAMTSL3;ENST00000561483.5_1_15:84323016-84694242:+|nuORF;nc|ENSG00000156218|P82987-2|ADAMTSL3;ADAMTSL3|p.R1336T|1|0.05|ENSG00000156218|chr15:84014575-84014575|G/C|missense_variant ENSG00000156218|ENST00000286744|ADAMTSL3 ENSG00000156218|ENST00000286744|ADAMTSL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2984008789062 2 534.297842 1066.58113 NaN NaN NaN NaN NaN NaN NaN 44.67 1 44.354 43.854 44.854 -0.31585 0 0 0 0.27852 1 23839 23839 36.044 11.37 1 72100 6438 48180 49230 83924 83924 0.05050333339931967 VPQPTRLKY 9 Unmodified _VPQPTRLKY_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8857727050781 3 367.885353 1100.63423 1.5957 0.00058702 -0.52262 -0.00019226 1.073 0.00039475 367.8852233527666 32.152 0.29963 28.421 28.258 28.557 -3.7314 24 17 2 0 0 0 0.098164 1 18315 18315 33.445 18.488 1 9458000 72101 10087 48181 49231 83925 83925 0.08793711122598324 VPQQALVI 8 Unmodified _VPQQALVI_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1;ENSG00000132681|ENST00000368081|ATP1A4 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2687683105469 2 434.268553 866.522553 -0.25329 -0.00011 1.1535 0.00050093 0.90022 0.00039094 434.2690531267932 78.493 0.48141 78.007 77.732 78.213 -0.48596 29 21 2 0 0 0 0.61462 1 42974 42974 24.674 3.8027 1 1246000 72102 6989;512;4438 48182 49232 83926 83926 0.08395276765452309 VPQQAPTPF 9 Unmodified _VPQQAPTPF_ 0 0 0 REV__nc|ENSG00000109111|Q7KZ85-2|SUPT6H REV__nc|ENSG00000109111|Q7KZ85-2|SUPT6H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7766723632812 2 492.761092 983.507631 0.16008 7.8881E-05 -0.62747 -0.00030919 -0.46739 -0.00023031 492.76081753383204 79.052 0.39946 79.052 78.829 79.229 0 40 18 3 0 0 0 0.48152 1 44004 44004 8.5933 3.3626 1 914020 + 72103 18646 48183 49233 83927 83927 0.015217848974771186 VPQQNGKTMF 10 Unmodified _VPQQNGKTMF_ 0 0 0 ENST00000579878.1_1_17:30219272-30221731:-|nuORF;ENST00000261708.8_1_17:30214316-30221752:-|nuORF ENST00000579878.1_1_17:30219272-30221731:-|nuORF ENST00000579878.1_1_17:30219272-30221731:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8629455566406 3 383.862219 1148.56483 0.35211 0.00013516 1.2666 0.0004862 1.6187 0.00062136 383.86257152685164 53.092 0.24664 52.64 52.496 52.742 -0.45173 26 12 3 0 0 0 0.70951 1 28707 28707 0.77653 0 1 2600200 72104 11249 48184 49234 83928 83928 -0.0035111588845211372 VPQQNGKTMF 10 Unmodified _VPQQNGKTMF_ 0 0 0 ENST00000579878.1_1_17:30219272-30221731:-|nuORF;ENST00000261708.8_1_17:30214316-30221752:-|nuORF ENST00000579878.1_1_17:30219272-30221731:-|nuORF ENST00000579878.1_1_17:30219272-30221731:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8628845214844 3 383.862219 1148.56483 0.57118 0.00021925 0.68219 0.00026187 1.2534 0.00048112 383.86249513484285 52.73 0.24165 52.667 52.563 52.804 -0.063423 31 11 4 0 0 0 0.70951 1 28572 28572 0.77653 0 1 7394100 72105 11249 48184 49234 83929 83929 -0.0035111588845211372 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.2505798339844 2 434.25036 866.486168 0.12597 5.4702E-05 -0.027332 -1.1869E-05 0.098635 4.2832E-05 434.25036259285463 49.073 0.4689 49.073 48.808 49.277 0 59 22 3 0 0 0 0.010818 2 27005 26885;27005 78.149 27.294 1 15920000 72106 7770 48185 49235 83930;83931 83931 0.04758399868762808 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.49365234375 1 867.493444 866.486168 0.079454 6.8926E-05 0.030001 2.6026E-05 0.10946 9.4952E-05 867.4934119122181 49.013 0.54415 49.013 48.808 49.352 0 61 26 3 0 0 0 0.0087807 2 26964 26964;27072 106.94 18.037 1 20281000 72107 7770 48185 49235 83932;83933 83932 0.04758399868762808 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 867.494140625 1 867.493444 866.486168 0.047967 4.1611E-05 0.41957 0.00036397 0.46753 0.00040558 867.493930795373 49.416 0.42004 49.024 48.778 49.198 -0.3923 39 20 3 0 0 0 0.011671 3 26558 26455;26558;26663 75.761 11.525 1 3594200 72108 7770 48185 49235 83934;83935;83936 83935 0.04758399868762808 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2503662109375 2 434.25036 866.486168 0.59133 0.00025678 -2.265 -0.00098357 -1.6737 -0.00072679 434.2501667047575 49.386 0.44351 48.994 48.735 49.178 -0.3923 41 21 3 0 0 0 0.03568 1 26508 26508 52.268 16.224 1 3653100 72109 7770 48185 49235 83937 83937 0.04758399868762808 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 867.4951171875 1 867.493444 866.486168 0.10017 8.6894E-05 0.32604 0.00028284 0.42621 0.00036973 867.4936424164615 56.191 0.6024 50.214 49.897 50.5 -5.9769 61 34 2 0 0 0 0.0047067 4 35931 35652;35664;35800;35931 118.07 21.52 1 51740000 72110 7770 48185 49235 83938;83939;83940;83941 83941 0.04758399868762808 VPQSGVPAL 9 Unmodified _VPQSGVPAL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2510681152344 2 434.25036 866.486168 0.38824 0.00016859 0.33809 0.00014682 0.72633 0.00031541 434.25061499638923 56.119 0.64869 50.143 49.851 50.5 -5.9769 77 37 3 0 0 0 0.0082661 3 35679 35679;35815;35947 92.491 25.148 1 73542000 72111 7770 48185 49235 83942;83943;83944 83942 0.04758399868762808 VPQTEYDLS 9 Unmodified _VPQTEYDLS_ 0 0 0 REV__ENSG00000074276|ENST00000261944|CDHR2 REV__ENSG00000074276|ENST00000261944|CDHR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2513427734375 2 526.250754 1050.48696 0.53817 0.00028321 0.74241 0.00039069 1.2806 0.0006739 526.2512486807486 50.577 0.44133 50.577 50.282 50.724 0 35 20 2 0 0 0 0.1773 1 27842 27842 25.399 3.6527 1 12026000 + 72112 17549 48186 49236 83945 83945 -0.03626850272848969 VPQTEYDLS 9 Unmodified _VPQTEYDLS_ 0 0 0 REV__ENSG00000074276|ENST00000261944|CDHR2 REV__ENSG00000074276|ENST00000261944|CDHR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 526.250754 1050.48696 0.53817 0.00028321 0.74241 0.00039069 1.2806 0.0006739 526.2512486807486 50.577 0.44133 50.577 50.282 50.724 0 -0.066439 -0.00031338 NaN 25.399 35 20 2 NaN NaN NaN NaN 0 NaN NaN 0 12026000 + 72113 17549 48186 49236 -0.03626850272848969 VPQTEYDLS 9 Unmodified _VPQTEYDLS_ 0 0 0 REV__ENSG00000074276|ENST00000261944|CDHR2 REV__ENSG00000074276|ENST00000261944|CDHR2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 526.250754 1050.48696 0.060349 3.1759E-05 1.9911 0.0010478 2.0515 0.0010796 526.2517914551476 51.124 0.37795 50.71 50.518 50.896 -0.41351 0.066439 0.0010009 NaN 25.399 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1425900 + 72114 17549 48186 49236 -0.03626850272848969 VPQTRWGY 8 Unmodified _VPQTRWGY_ 0 0 0 ENSG00000055147|ENST00000351797|FAM114A2 ENSG00000055147|ENST00000351797|FAM114A2 ENSG00000055147|ENST00000351797|FAM114A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7593078613281 2 503.758884 1005.50321 NaN NaN NaN NaN NaN NaN NaN 71.487 1 71.487 70.987 71.987 0 0 0 0 0.97444 1 39818 39818 2.5775 0 1 72115 774 48187 49237 83946 83946 0.0006832047456555301 VPQTSVDP 8 Unmodified _VPQTSVDP_ 0 0 0 nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH nc|ENSG00000103599|Q86VS3-4|IQCH nc|ENSG00000103599|Q86VS3-4|IQCH MULTI-MSMS AL20221201_MKP_PDAC_01 4 842.4248046875 1 842.425424 841.418148 0.58161 0.00048996 -0.027895 -2.3499E-05 0.55371 0.00046646 842.4254304750266 66.958 0.44554 60.782 60.558 61.003 -6.1757 42 24 2 0 0 0 0.23628 1 43494 43494 64.236 0.67347 1 17839000 72116 2155 48188 49238 83947 83947 -0.008904697819048124 VPQVSRPL 8 Unmodified _VPQVSRPL_ 0 0 0 REV__ENST00000540163.5_1_11:114270984-114271173:+|nuORF REV__ENST00000540163.5_1_11:114270984-114271173:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2713317871094 2 448.271627 894.528701 -0.5541 -0.00024839 0.366 0.00016407 -0.1881 -8.4319E-05 448.27177008696475 36.079 0.40884 35.829 35.638 36.046 -0.2497 46 18 3 0 0 0 0.61462 1 18982 18982 24.674 1.9376 1 20348000 + 72117 28577 48189 49239 83948 83948 0.07721794997007692 VPQVSRPL 8 Unmodified _VPQVSRPL_ 0 0 0 REV__ENST00000540163.5_1_11:114270984-114271173:+|nuORF REV__ENST00000540163.5_1_11:114270984-114271173:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.27197265625 2 448.271627 894.528701 0.53026 0.0002377 0.099024 4.4389E-05 0.62929 0.00028209 448.271721359861 40.29 0.57775 35.761 35.52 36.097 -4.5294 109 43 3 0 0 0 0.5284 1 24028 24028 32.117 3.0354 1 121820000 + 72118 28577 48189 49239 83949 83949 0.07721794997007692 VPQYPGYGY 9 Unmodified _VPQYPGYGY_ 0 0 0 REV__nc|ENSG00000126549|P02808-2|STATH REV__nc|ENSG00000126549|P02808-2|STATH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2459716796875 2 522.245275 1042.476 0.42029 0.0002195 1.253 0.00065439 1.6733 0.00087388 522.2460028961567 49.237 0.33059 48.866 48.654 48.984 -0.37172 32 15 3 0 0 0 0.39863 1 26440 26440 12.532 12.532 1 2127500 + 72119 19550 48190 49240 83950 83950 -0.04354207856454195 VPRAAFLSPL 10 Unmodified _VPRAAFLSPL_ 0 0 0 ENSG00000089248|ENST00000261735|ERP29;nc|ENSG00000089248|P30040-2|ERP29;ENST00000553161.1_1_12:112451251-112452397:+|nuORF ENSG00000089248|ENST00000261735|ERP29 ENSG00000089248|ENST00000261735|ERP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.82080078125 2 535.821484 1069.62842 0.7345 0.00039356 -0.64967 -0.00034811 0.084828 4.5453E-05 535.8210649165114 65.498 0.2788 65.498 65.324 65.603 1.5259E-05 26 12 3 0 0 0 0.18439 1 35915 35915 41.84 23.693 1 6337000 72120 1525 48191 49241 83951 83951 0.09638612610956443 VPRAILVDL 9 Unmodified _VPRAILVDL_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.3155517578125 2 498.316035 994.617516 0.47164 0.00023503 0.34065 0.00016975 0.81229 0.00040478 498.3161231025463 67.662 0.339 67.18 67.031 67.37 -0.48218 31 14 3 0 0 0 0.07087 1 36951 36951 39.95 5.548 1 3268500 72121 9783;4920;10820;14685 48192 49242 83952 83952 0.11999210236660929 VPRAILVDL 9 Unmodified _VPRAILVDL_ 0 0 0 ENSG00000196230|ENST00000327892|TUBB;ENST00000489942.1_1_6:3155224-3157697:-|nuORF;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 498.316035 994.617516 0.59291 0.00029546 0.40981 0.00020421 1.0027 0.00049967 498.3162888129955 67.151 0.2155 67.169 67.082 67.297 0.018028 -0.0055557 6.0994E-05 NaN 39.95 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1553600 72122 9783;4920;10820;14685 48192 49242 0.11999210236660929 VPRAPHAP 8 Unmodified _VPRAPHAP_ 0 0 0 ENSG00000077420|ENST00000376236|APBB1IP ENSG00000077420|ENST00000376236|APBB1IP ENSG00000077420|ENST00000376236|APBB1IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 847.4866943359375 1 844.478797 843.471521 -0.82037 -0.00069279 -0.47973 -0.00040512 -1.3001 -0.0010979 844.4783938612931 55.471 0.34794 55.471 55.283 55.631 0 44 15 4 0 0 0 0.80975 1 30792 30792 0.79363 0 1 14037000 72123 1217 48193 49243 83953 83953 0.04352372511266367 VPRAQFIF 8 Unmodified _VPRAQFIF_ 0 0 0 ENSG00000215187|ENST00000399742|FAM166B;nc|ENSG00000215187|A8MTA8-2|CIMIP2B;ENST00000492890.5_1_9:35561867-35563864:-|nuORF ENSG00000215187|ENST00000399742|FAM166B ENSG00000215187|ENST00000399742|FAM166B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2813415527344 2 489.281995 976.549437 NaN NaN NaN NaN NaN NaN NaN 26.411 1 26.411 25.911 26.911 0 0 0 0 0.97444 1 13576 13576 2.5775 0 1 72124 10524 48194 49244 83954 83954 0.060223853766501634 VPRASYGDDL 10 Unmodified _VPRASYGDDL_ 0 0 0 ENST00000531503.5_1_11:65601407-65603015:+|nuORF;ENST00000533298.5_1_11:65601362-65617723:+|nuORF ENST00000531503.5_1_11:65601407-65603015:+|nuORF ENST00000531503.5_1_11:65601407-65603015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7758178710938 2 546.769645 1091.52474 -0.21815 -0.00011928 -0.2395 -0.00013095 -0.45765 -0.00025023 546.7694881511023 35.219 0.36377 35.219 35.016 35.38 0 74 18 5 0 0 0 0.66569 1 18670 18670 6.7232 0 1 139100000 72125 14909 48195 49245 83955 83955 -0.017363392873676275 VPRATNSTYL 10 Unmodified _VPRATNSTYL_ 0 0 0 ENSG00000148488|ENST00000377602|ST8SIA6 ENSG00000148488|ENST00000377602|ST8SIA6 ENSG00000148488|ENST00000377602|ST8SIA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3013305664062 2 561.301113 1120.58767 0.4399 0.00024691 3.2267 0.0018112 3.6666 0.0020581 561.3019873817999 69.288 0.29282 69.288 69.152 69.444 0 21 12 2 0 0 0 0.60623 1 38643 38643 10.824 1.4408 1 771370 72126 5940 48196 49246 83956 83956 0.03220226500661738 VPRAVFVDL 9 Unmodified _VPRAVFVDL_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3049621582031 2 508.300384 1014.58622 3.9463 0.0020059 2.7904 0.0014184 6.7368 0.0034243 508.3018690797639 98.393 0.52685 98.365 98.005 98.532 -0.028282 32 19 2 0 0 0 0.48152 1 54701 54701 8.5933 2.2392 1 2529800 72127 3708;4027;7630;16164 48197 49247 83957 83957 0.07950637202554844 VPRAVLVDL 9 Unmodified _VPRAVLVDL_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;ENST00000604929.1_1_9:140135770-140136775:+|nuORF;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000261456|ENST00000568584|TUBB8 ENSG00000188229|ENST00000340384|TUBB4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.3087463378906 2 491.30821 980.601866 0.086388 4.2443E-05 0.40569 0.00019932 0.49208 0.00024176 491.30872209713675 61.492 0.21436 61.002 60.858 61.072 -0.48932 17 9 2 0 0 0 0.30202 1 33513 33513 17.113 3.2068 1 914540 72128 9643;8299 48198 49248 83958 83958 0.11078923719594513 VPRDKRLLSV 10 Unmodified _VPRDKRLLSV_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9155883789062 3 394.915423 1181.72444 NaN NaN NaN NaN NaN NaN NaN 27.833 1 27.863 27.363 28.363 0.029564 0 0 0 0.78727 1 14475 14475 12.856 6.2325 1 72129 1363 48199 49249 83959 83959 0.14084760451032707 VPREEDTDI 9 Unmodified _VPREEDTDI_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2588500976562 2 537.259111 1072.50367 0.36711 0.00019724 -0.018321 -9.8431E-06 0.34879 0.00018739 537.2591080986539 48.063 0.42303 48.063 47.789 48.212 0 32 20 2 0 0 0 0.18882 1 26426 26426 15.847 5.0233 1 10771000 + 72130 19369 48200 49250 83960 83960 -0.029683493869015365 VPREEDTDI 9 Unmodified _VPREEDTDI_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 537.259111 1072.50367 0.31169 0.00016746 -0.46021 -0.00024725 -0.14852 -7.9796E-05 537.2596019609626 48.423 0.14013 48.051 47.983 48.123 -0.37172 -0.0060418 -0.00040235 NaN 15.847 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 747220 + 72131 19369 48200 49250 -0.029683493869015365 VPRELWPYYHR 11 Unmodified _VPRELWPYYHR_ 0 0 0 REV__ENST00000378103.7_3_9:35744336-35744694:-|nuORF REV__ENST00000378103.7_3_9:35744336-35744694:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2393798828125 3 505.933366 1514.77827 -0.11958 -6.0499E-05 0.84996 0.00043002 0.73038 0.00036952 505.9340517389689 19.217 0.13552 19.217 19.147 19.282 0 18 8 3 0 0 0 0.30584 1 9612 9612 1.3296 0.11481 1 830490 + 72132 26260 48201 49251 83961 83961 0.04146932882758847 VPRENLQL 8 Unmodified _VPRENLQL_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7789306640625 2 484.779816 967.545079 NaN NaN NaN NaN NaN NaN NaN 42.571 1 42.264 41.764 42.764 -0.30682 0 0 0 0.47897 1 22618 22618 42.095 0 1 + 72133 20378 48202 49252 83962 83962 0.06000876163091107 VPRENLQL 8 Unmodified _VPRENLQL_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7798156738281 2 484.779816 967.545079 0.5971 0.00028946 -0.64239 -0.00031142 -0.045285 -2.1953E-05 484.77938840536973 46.845 0.25305 41.765 41.693 41.946 -5.0805 47 36 2 0 0 0 0.3408 2 28972 28972;29103 50.855 0 1 29876000 + 72134 20378 48202 49252 83963;83964 83963 0.06000876163091107 VPRERMNL 8 Unmodified _VPRERMNL_ 0 0 0 ENST00000478641.5_1_1:1248876-1249468:-|nuORF ENST00000478641.5_1_1:1248876-1249468:-|nuORF ENST00000478641.5_1_1:1248876-1249468:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2808837890625 2 507.779293 1013.54403 0.1343 6.8195E-05 -0.57804 -0.00029352 -0.44374 -0.00022532 507.7788089518676 89.344 0.4846 88.842 88.591 89.076 -0.50171 45 20 3 0 0 0 0.80624 1 48781 48781 2.8892 0 1 965970 72135 14023 48203 49253 83965 83965 0.037803385225288366 VPRETPFT 8 Unmodified _VPRETPFT_ 0 0 0 nc|ENSG00000167394|Q96K58-2|ZNF668 nc|ENSG00000167394|Q96K58-2|ZNF668 nc|ENSG00000167394|Q96K58-2|ZNF668 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7523803710938 2 473.753267 945.491981 NaN NaN NaN NaN NaN NaN NaN 43.051 1 43.051 42.551 43.551 0 0 0 0 0.88449 1 23357 23357 19.257 2.3147 1 72136 16358 48204 49254 83966 83966 0.01705498380431436 VPREYIRAL 9 Unmodified _VPREYIRAL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8890075683594 3 372.888986 1115.64513 0.017826 6.6471E-06 1.2584 0.00046923 1.2762 0.00047588 372.88942251919036 38.18 0.28153 37.909 37.782 38.064 -0.27133 33 12 4 0 0 0 0.11005 1 20078 20078 32.037 18.423 1 5444500 72137 7266 48205 49255 83967 83967 0.09193113496894512 VPREYIRAL 9 Unmodified _VPREYIRAL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8899230957031 3 372.888986 1115.64513 1.4844 0.00055353 1.7865 0.00066615 3.2709 0.0012197 372.88984307618796 42.512 0.67685 37.828 37.317 37.994 -4.6846 70 44 2 0 0 0 0.11005 1 25403 25403 32.037 16.789 1 50559000 72138 7266 48205 49255 83968 83968 0.09193113496894512 VPRFEKHLY 9 Unmodified _VPRFEKHLY_ 0 0 0 ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8887329101562 3 396.888986 1187.64513 0.58475 0.00023208 -0.38208 -0.00015164 0.20267 8.0438E-05 396.88858681461033 28.203 0.15246 28.156 28.062 28.215 -0.046408 12 5 3 0 0 0 0.18144 1 14549 14549 24.991 15.447 1 8062100 72139 10504 48206 49256 83969 83969 0.05881113496911894 VPRFEKHLY 9 Unmodified _VPRFEKHLY_ 0 0 0 ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 ENSG00000214706|ENST00000417626|IFRD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.88916015625 3 396.888986 1187.64513 0.69834 0.00027716 -0.2824 -0.00011208 0.41594 0.00016508 397.22317419402356 31.604 0.17554 27.908 27.808 27.983 -3.6958 14 8 2 0 0 0 0.085786 1 17903 17903 36.395 12.605 1 30759000 72140 10504 48206 49256 83970 83970 0.05881113496911894 VPRFIQQKL 9 Unmodified _VPRFIQQKL_ 0 0 0 ENST00000415574.6_1_2:132263967-132275411:+|nuORF ENST00000415574.6_1_2:132263967-132275411:+|nuORF ENST00000415574.6_1_2:132263967-132275411:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3126220703125 2 564.848033 1127.68151 0.61611 0.00034801 0.040099 2.265E-05 0.65621 0.00037066 564.8483518303411 67.675 0.27577 67.693 67.553 67.829 0.018036 21 13 2 0 0 0 0.21367 1 37103 37103 4.756 0.81161 1 3368500 72141 13023 48207 49257 83971 83971 0.12277990393613436 VPRGQGSQF 9 Unmodified _VPRGQGSQF_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2539672851562 2 488.253966 974.493378 -0.31371 -0.00015317 0.20394 9.9574E-05 -0.10977 -5.3596E-05 488.253991938124 19.804 0.37142 19.804 19.637 20.008 0 113 51 3 0 0 0 0.0090524 1 9951 9951 85.642 37.296 1 4608600 72142 1449 48208 49258 83972 83972 0.005111324691938535 VPRGQGSQF 9 Unmodified _VPRGQGSQF_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2544250488281 2 488.253966 974.493378 -0.31199 -0.00015233 0.72654 0.00035474 0.41455 0.00020241 488.2542210030261 19.725 0.32298 19.754 19.613 19.936 0.028357 50 22 3 0 0 0 0.20428 2 10014 9916;10014 22.736 7.3721 1 2358800 72143 1449 48208 49258 83973;83974 83974 0.005111324691938535 VPRGQGSQF 9 Unmodified _VPRGQGSQF_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2543029785156 2 488.253966 974.493378 1.0458 0.00051061 0.4605 0.00022484 1.5063 0.00073545 488.25404001206743 21.832 0.52675 19.097 18.827 19.354 -2.7348 77 29 3 0 0 0 0.013041 2 11761 11653;11761 71.922 13.243 1 21182000 72144 1449 48208 49258 83975;83976 83976 0.005111324691938535 VPRGQGSQF 9 Unmodified _VPRGQGSQF_ 0 0 0 ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A ENSG00000087074|ENST00000200453|PPP1R15A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 488.253966 974.493378 0.34414 0.00016803 1.591 0.0007768 1.9351 0.00094483 488.25503329942273 19.712 0.22642 19.72 19.629 19.855 0.0078506 -0.039209 0.0010019 NaN 85.642 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 464160 72145 1449 48208 49258 0.005111324691938535 VPRGSTLPLL 10 Unmodified _VPRGSTLPLL_ 0 0 0 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 ENSG00000178607|ENST00000433197|ERN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2813110351562 2 526.826766 1051.63898 0.25158 0.00013254 0.035317 1.8606E-05 0.2869 0.00015115 526.826803969097 61.478 0.3192 61.445 61.271 61.59 -0.032787 25 15 2 0 0 0 0.22636 1 33587 33587 17.113 3.2068 1 3245900 72146 8762 48209 49259 83977 83977 0.11522595265387281 VPRHEVPDI 9 Unmodified _VPRHEVPDI_ 0 0 0 nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK nc|ENSG00000120156|Q02763-3|TEK nc|ENSG00000120156|Q02763-3|TEK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 354.87841796875 3 354.529458 1060.56654 1.522 0.00053959 2.7652 0.00098033 4.2871 0.0015199 354.5304683854062 39.075 0.12025 34.624 34.538 34.659 -4.4509 11 7 2 0 0 0 0.20528 1 23084 23084 5.2969 0 1 6253100 72147 16157 48210 49260 83978 83978 0.03868261191792044 VPRHEVPDI 9 Unmodified _VPRHEVPDI_ 0 0 0 nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK nc|ENSG00000120156|Q02763-3|TEK nc|ENSG00000120156|Q02763-3|TEK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 354.529458 1060.56654 -0.049217 -1.7449E-05 3.6404 0.0012906 3.5912 0.0012732 354.5310555633032 34.745 0.1657 34.772 34.713 34.878 0.027401 0.074209 0.00056099 NaN 5.2969 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1401800 72148 16157 48210 49260 0.03868261191792044 VPRHSLTSLF 10 Unmodified _VPRHSLTSLF_ 0 0 0 REV__ENST00000396425.7_1_22:42390756-42390969:+|nuORF REV__ENST00000396425.7_1_22:42390756-42390969:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.82958984375 2 578.827298 1155.64004 2.8415 0.0016447 1.3316 0.00077078 4.1731 0.0024155 578.8280371762665 96.813 0.31284 96.806 96.645 96.958 -0.007019 34 11 4 0 0 0 0.44373 1 53742 53742 19.257 0 1 10575000 + 72149 26504 48211 49261 83979 83979 0.06844809634276317 VPRIDPYGF 9 Unmodified _VPRIDPYGF_ 0 0 0 ENSG00000139835|ENST00000375431|GRTP1;nc|ENSG00000139835|Q5TC63-3|GRTP1 ENSG00000139835|ENST00000375431|GRTP1 ENSG00000139835|ENST00000375431|GRTP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.22900390625 2 532.282192 1062.54983 0.26306 0.00014002 0.89851 0.00047826 1.1616 0.00061829 532.2828518410472 59.581 0.29327 59.09 58.921 59.214 -0.49079 22 13 2 0 0 0 0.18811 1 32352 32352 17.113 4.5813 1 2220900 72150 5193 48212 49262 83980 83980 0.021057603058579843 VPRIQFKP 8 Unmodified _VPRIQFKP_ 0 0 0 REV__nc|ENSG00000090612|Q14587-7|ZNF268 REV__nc|ENSG00000090612|Q14587-7|ZNF268 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.8021850585938 2 492.803094 983.591636 NaN NaN NaN NaN NaN NaN NaN 27.24 1 27.269 26.769 27.769 0.028664 0 0 0 0.73801 1 14153 14153 26.341 0 1 + 72151 29529 48213 49263 83981 83981 0.09918360785036384 VPRIQLEEY 9 Unmodified _VPRIQLEEY_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.8118286132812 2 573.811313 1145.60807 0.45291 0.00025988 1.059 0.00060765 1.5119 0.00086753 573.8119128807891 50.513 0.47544 50.513 50.188 50.664 0 54 21 4 0 0 0 0.022461 2 27817 27817;27921 66.457 30.33 1 27604000 72152 7194 48214 49264 83982;83983 83982 0.04109397160482331 VPRIQLEEY 9 Unmodified _VPRIQLEEY_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MSMS AL20221201_MKP_PDAC_01 4 573.8114624023438 2 573.811313 1145.60807 NaN NaN NaN NaN NaN NaN NaN 56.529 1 50.553 50.053 51.053 -5.9769 0 0 0 0.18257 1 36083 36083 34.932 12.196 1 72153 7194 48214 49264 83984 83984 0.04109397160482331 VPRIQLEEY 9 Unmodified _VPRIQLEEY_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MSMS AL20221201_MKP_PDAC_01 4 573.8115234375 2 573.811313 1145.60807 NaN NaN NaN NaN NaN NaN NaN 56.708 1 50.731 50.231 51.231 -5.9769 0 0 0 0.061499 1 36211 36211 66.457 32.055 1 72154 7194 48214 49264 83985 83985 0.04109397160482331 VPRIQPQSL 9 Unmodified _VPRIQPQSL_ 0 0 0 nc|ENSG00000165506|Q9NVR5-2|DNAAF2;ENSG00000165506|ENST00000298292|DNAAF2 nc|ENSG00000165506|Q9NVR5-2|DNAAF2 nc|ENSG00000165506|Q9NVR5-2|DNAAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.3084106445312 2 519.308741 1036.60293 -0.25277 -0.00013126 0.52669 0.00027352 0.27392 0.00014225 519.3087864546779 42.041 0.17583 41.735 41.641 41.817 -0.30682 14 8 2 0 0 0 0.0087873 1 22313 22313 103.35 18.081 1 5949400 72155 7350 48215 49265 83986 83986 0.08609138088513646 VPRKNTVKTIL 11 Unmodified _VPRKNTVKTIL_ 0 0 0 ENST00000503001.5_1_4:87809378-87812673:-|nuORF;ENSG00000163633|ENST00000295898|C4orf36 ENST00000503001.5_1_4:87809378-87812673:-|nuORF ENST00000503001.5_1_4:87809378-87812673:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.60693359375 3 423.606478 1267.79761 0.64841 0.00027467 -0.34214 -0.00014493 0.30627 0.00012974 423.6062107048401 26.466 0.29815 23.515 23.34 23.638 -2.9511 24 15 2 0 0 0 0.53099 1 14570 14570 14.838 3.9389 1 6151500 72156 7036 48216 49266 83987 83987 0.17441889173665004 VPRKRPGP 8 Unmodified _VPRKRPGP_ 0 0 0 REV__ENSG00000104903|ENST00000264824|LYL1 REV__ENSG00000104903|ENST00000264824|LYL1 MSMS AL20221201_MKP_PDAC_01 4 453.7863464355469 2 453.785236 905.555919 NaN NaN NaN NaN NaN NaN NaN 0.55418 1 -1.9278 -2.4278 -1.4278 -2.482 0 0 0 0.97444 1 293 293 0 0 1 + 72157 18388 48217 49267 83988 83988 0.09936323328042818 VPRLDIKLP 9 Unmodified _VPRLDIKLP_ 0 0 0 REV__ENSG00000111530|ENST00000545606|CAND1 REV__ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.837646484375 2 525.837134 1049.65972 0.23902 0.00012569 1.6315 0.00085789 1.8705 0.00098358 525.8379082494076 74.453 0.27379 74.499 74.321 74.595 0.045967 21 11 2 0 0 0 0.40476 1 41020 41020 12.241 0 1 1273200 + 72158 18754 48218 49268 83989 83989 0.13687185645017053 VPRLFSLTL 9 Unmodified _VPRLFSLTL_ 0 0 0 nc|ENSG00000175115|Q6VY07-2|PACS1;ENSG00000175115|ENST00000320580|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF nc|ENSG00000175115|Q6VY07-2|PACS1 nc|ENSG00000175115|Q6VY07-2|PACS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.3224487304688 2 523.32386 1044.63317 0.71163 0.00037242 -0.21641 -0.00011325 0.49522 0.00025916 523.3236727864557 99.109 0.11269 92.933 92.878 92.99 -6.1757 12 6 2 0 0 0 0.01958 1 65914 65914 63.961 18.261 1 25141000 72159 16395 48219 49269 83990 83990 0.1126349675369056 VPRLIQKL 8 Unmodified _VPRLIQKL_ 0 0 0 ENSG00000138641|ENST00000402738|HERC3;nc|ENSG00000287542|Q15034-2|HERC3 ENSG00000138641|ENST00000402738|HERC3 ENSG00000138641|ENST00000402738|HERC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.8263854980469 2 483.826569 965.638586 0.42563 0.00020593 0.017414 8.4255E-06 0.44305 0.00021436 483.8266883335729 45.324 0.39129 40.369 40.164 40.555 -4.9549 45 26 2 0 0 0 0.48669 1 27745 27745 36.044 0 1 22191000 72160 5076 48220 49270 83991 83991 0.1543922033616809 VPRLYRYQFDP 11 Unmodified _VPRLYRYQFDP_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 727.381591796875 2 727.382968 1452.75138 NaN NaN NaN NaN NaN NaN NaN 63.741 1 63.741 63.241 64.241 0 0 0 0 0.94144 1 35552 35552 1.4819 0 1 72161 4858 48221 49271 83992 83992 0.043118242715536326 VPRNDSLSL 9 Unmodified _VPRNDSLSL_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7752075195312 2 500.774731 999.534909 0.35179 0.00017617 0.7206 0.00036086 1.0724 0.00053703 500.7748630764808 37.849 0.46299 37.849 37.645 38.108 0 48 22 3 0 0 0 0.040683 1 20145 20145 49.554 11.379 1 3122700 72162 3713 48222 49272 83993 83993 0.03512268437862076 VPRNDSLSL 9 Unmodified _VPRNDSLSL_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7755126953125 2 500.774731 999.534909 NaN NaN NaN NaN NaN NaN NaN 38.009 1 38.009 37.509 38.509 0 0 0 0 0.13831 1 20270 20270 38.176 14.155 1 72163 3713 48222 49272 83994 83994 0.03512268437862076 VPRNDSLSL 9 Unmodified _VPRNDSLSL_ 0 0 0 nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP;nc|ENSG00000123485|Q8NCD3-3|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP nc|ENSG00000123485|Q8NCD3-2|HJURP MSMS AL20221201_MKP_PDAC_01 4 500.7720947265625 2 500.774731 999.534909 NaN NaN NaN NaN NaN NaN NaN 42.529 1 37.844 37.344 38.344 -4.6846 0 0 0 0.091025 1 25705 25705 45.7 3.6051 1 72164 3713 48222 49272 83995 83995 0.03512268437862076 VPRNPTIGDKF 11 Unmodified _VPRNPTIGDKF_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.2318420410156 3 415.2313 1242.67207 -0.24389 -0.00010127 1.1344 0.00047104 0.89052 0.00036977 415.2317714194231 33.154 0.31004 32.994 32.833 33.144 -0.15918 30 12 3 0 0 0 0.40509 1 17265 17265 21.241 15.839 1 6087200 72165 3863 48223 49273 83996 83996 0.0604417731740341 VPRNPTIGDKF 11 Unmodified _VPRNPTIGDKF_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2317199707031 3 415.2313 1242.67207 1.4235 0.00059107 0.31436 0.00013053 1.7378 0.0007216 415.23141280452506 37.076 0.37446 32.792 32.599 32.974 -4.2835 54 22 3 0 0 0 0.36533 1 21713 21713 23.34 12.441 1 25396000 72166 3863 48223 49273 83997 83997 0.0604417731740341 VPRNSYVRL 9 Unmodified _VPRNSYVRL_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ITPR2|p.D540Afs*36|1|0.39|ENSG00000123104|chr12:26663778-26663779|AT/-|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000096433|ENST00000605930|ITPR3;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000096433|ENST00000605930|ITPR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5489196777344 3 368.548852 1102.62473 -0.29376 -0.00010826 0.19421 7.1576E-05 -0.099548 -3.6688E-05 368.54886641235146 31.694 0.21567 31.724 31.584 31.8 0.030106 20 9 3 0 0 0 0.21643 1 16629 16629 20.581 16.052 1 2099600 72167 1673;3680;6083 48224 49274 83998 83998 0.07751942837080605 VPRNYDPAL 9 Unmodified _VPRNYDPAL_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;nc|ENSG00000164934|Q9NV06-2|DCAF13;ENST00000521716.1_1_8:104427674-104432721:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7769775390625 2 522.777274 1043.53999 0.68195 0.00035651 -1.0127 -0.00052941 -0.33074 -0.00017291 522.7767181146335 39.667 0.35775 35.216 35.028 35.385 -4.4509 38 22 2 0 0 0 0.040683 1 23512 23512 49.554 15.153 1 18089000 72168 7266 48225 49275 83999 83999 0.019965723004588654 VPRPAARVAL 10 Unmodified _VPRPAARVAL_ 0 0 0 ENST00000495007.5_1_21:45553579-45553738:+|nuORF;ENST00000480786.1_1_21:45553579-45560342:+|nuORF;nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3 ENST00000495007.5_1_21:45553579-45553738:+|nuORF ENST00000495007.5_1_21:45553579-45553738:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.5570373535156 3 350.557459 1048.65055 -0.21511 -7.5409E-05 0.50292 0.0001763 0.28781 0.00010089 350.5575234298801 32.644 0.31775 32.674 32.466 32.784 0.029743 16 12 2 0 0 0 0.64183 1 17170 17170 8.9762 0.23084 1 1924600 72169 6706 48226 49276 84000 84000 0.1281683707936736 VPRPAARVAL 10 Unmodified _VPRPAARVAL_ 0 0 0 ENST00000495007.5_1_21:45553579-45553738:+|nuORF;ENST00000480786.1_1_21:45553579-45560342:+|nuORF;nc|ENSG00000160221|P0DPI2-2|GATD3;ENSG00000160221|ENST00000291577|GATD3 ENST00000495007.5_1_21:45553579-45553738:+|nuORF ENST00000495007.5_1_21:45553579-45553738:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5576477050781 3 350.557459 1048.65055 1.7357 0.00060847 -0.084415 -2.9592E-05 1.6513 0.00057888 350.5575154474288 36.946 0.37283 32.663 32.438 32.81 -4.2835 48 22 3 0 0 0 0.16005 2 21563 21563;21692 38.615 17.078 1 11609000 72170 6706 48226 49276 84001;84002 84001 0.1281683707936736 VPRPASVSA 9 Unmodified _VPRPASVSA_ 0 0 0 ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A ENSG00000108773|ENST00000225916|KAT2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2547912597656 2 442.253434 882.492316 -0.03648 -1.6134E-05 1.3122 0.00058031 1.2757 0.00056418 442.25394143202215 25.629 0.2457 22.719 22.618 22.863 -2.9097 18 13 2 0 0 0 0.18144 1 14017 14017 24.991 4.5764 1 3330100 72171 2602 48227 49277 84003 84003 0.046369181002773985 VPRPAVLDPAL 11 Unmodified _VPRPAVLDPAL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.3456420898438 2 574.345323 1146.67609 0.46191 0.0002653 -0.080913 -4.6472E-05 0.381 0.00021883 574.3452845949565 58.1 0.29368 57.61 57.43 57.724 -0.48974 39 13 4 0 0 0 0.16515 2 31529 31529;31633 34.932 12.196 1 9168500 72172 319 48228 49278 84004;84005 84004 0.10862266811136578 VPRPAVLDPAL 11 Unmodified _VPRPAVLDPAL_ 0 0 0 ENSG00000005884|ENST00000320031|ITGA3;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;ENST00000506401.6_1_17:48148218-48152910:+|nuORF ENSG00000005884|ENST00000320031|ITGA3 ENSG00000005884|ENST00000320031|ITGA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3465576171875 2 574.345323 1146.67609 1.3001 0.00074673 0.13894 7.9799E-05 1.4391 0.00082653 574.3453116762776 63.747 0.43527 57.571 57.405 57.841 -6.1757 37 23 2 0 0 0 0.13335 1 41274 41274 38.615 15.878 1 9121200 72173 319 48228 49278 84006 84006 0.10862266811136578 VPRPDCQE 8 Unmodified _VPRPDCQE_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2746887207031 2 472.218734 942.422915 NaN NaN NaN NaN NaN NaN NaN 74.151 1 73.675 73.175 74.175 -0.47588 0 0 0 0.97444 1 40585 40585 0.79363 0 1 + 72174 19045 48229 49279 84007 84007 -0.050599089107890904 VPRPPQTSL 9 Unmodified _VPRPPQTSL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7873840332031 2 497.787641 993.56073 -0.31987 -0.00015923 -0.1304 -6.491E-05 -0.45027 -0.00022414 497.7875849615359 34.502 0.56845 34.311 33.972 34.541 -0.19132 67 24 3 0 0 0 0.0086209 3 17997 17850;17997;18107 89.401 43.701 1 15149000 72175 448 48230 49280 84008;84009;84010 84009 0.0636916268015284 VPRPPQTSL 9 Unmodified _VPRPPQTSL_ 0 0 0 nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-2|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;ENST00000600632.1_1_19:15534992-15535583:-|nuORF nc|ENSG00000011451|O95785|WIZ nc|ENSG00000011451|O95785|WIZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7877807617188 2 497.787641 993.56073 0.24617 0.00012254 -0.22678 -0.00011289 0.019392 9.6529E-06 497.7877212243369 34.227 0.48453 34.255 33.971 34.456 0.027401 34 22 2 0 0 0 0.078314 2 17999 17999;18122 38.176 18.919 1 2017900 72176 448 48230 49280 84011;84012 84011 0.0636916268015284 VPRPPSLLATL 11 Unmodified _VPRPPSLLATL_ 0 0 0 nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A nc|ENSG00000160305|Q14689-6|DIP2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3605346679688 2 582.360973 1162.70739 0.63742 0.00037121 -1.0423 -0.00060702 -0.40492 -0.00023581 582.3601847562869 72.961 0.36148 73.003 72.823 73.184 0.041725 29 17 2 0 0 0 0.22582 1 40153 40153 30.703 13.591 1 4692800 72177 6717 48231 49281 84013 84013 0.13254839845239985 VPRPPSTLL 9 Unmodified _VPRPPSTLL_ 0 0 0 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 ENSG00000129654|ENST00000322957|FOXJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.3013305664062 2 490.300384 978.586216 1.5627 0.0007662 -0.24862 -0.0001219 1.3141 0.0006443 490.30031304691033 50.301 0.60818 50.253 49.947 50.555 -0.048828 68 29 3 0 0 0 0.025842 2 27240 27141;27240 57.722 21.595 1 4968500 72178 4156 48232 49282 84014;84015 84015 0.0960663720258026 VPRPTKSSF 9 Unmodified _VPRPTKSSF_ 0 0 0 ENST00000401044.7_1_1:59134235-59156019:-|nuORF;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENSG00000162601|ENST00000472487|MYSM1 ENST00000401044.7_1_1:59134235-59156019:-|nuORF ENST00000401044.7_1_1:59134235-59156019:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7876892089844 2 509.787641 1017.56073 0.0010279 5.2401E-07 0.77828 0.00039676 0.77931 0.00039728 509.78814612345855 23.514 0.26755 20.687 20.523 20.791 -2.8273 22 15 2 0 0 0 0.069655 1 12713 12713 40.239 16.219 1 2072800 72179 6880 48233 49283 84016 84016 0.052651626801548446 VPRPVLRAL 9 Unmodified _VPRPVLRAL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.83740234375 2 510.837468 1019.66038 0.068501 3.4993E-05 -0.22542 -0.00011515 -0.15691 -8.0158E-05 510.837334354379 41.583 0.2578 41.581 41.422 41.68 -0.0017891 27 11 3 0 0 0 0.0090851 1 22204 22204 85.357 31.781 1 9139400 72180 1536 48234 49284 84017 84017 0.15134025084751102 VPRPVLRAL 9 Unmodified _VPRPVLRAL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8375854492188 2 510.837468 1019.66038 0.50525 0.0002581 0.21064 0.0001076 0.71589 0.0003657 510.837578943831 45.948 0.41727 40.993 40.759 41.176 -4.9549 68 27 3 0 0 0 0.0083087 2 28324 28189;28324 97.075 43.499 1 41379000 72181 1536 48234 49284 84018;84019 84019 0.15134025084751102 VPRPVLRALSF 11 Unmodified _VPRPVLRALSF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.9266662597656 3 418.927552 1253.76083 0.23505 9.8468E-05 -1.0909 -0.00045702 -0.85589 -0.00035856 418.92689606217647 60.311 0.19841 60.268 60.152 60.351 -0.043507 11 9 2 0 0 0 0.40509 1 32905 32905 21.241 12.797 1 5999400 72182 1536 48235 49285 84020 84020 0.1440963734773959 VPRPVLRALSF 11 Unmodified _VPRPVLRALSF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.9275817871094 3 418.927552 1253.76083 1.2506 0.00052391 0.14419 6.0404E-05 1.3948 0.00058431 418.92767998636185 91.518 0.38173 85.343 85.127 85.509 -6.1757 64 20 4 0 0 0 0.074411 2 60417 60417;60538 45.603 33.428 1 78598000 72183 1536 48235 49285 84021;84022 84021 0.1440963734773959 VPRPVLRALSF 11 Unmodified _VPRPVLRALSF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3888549804688 2 627.88769 1253.76083 0.75513 0.00047413 0.2926 0.00018372 1.0477 0.00065786 627.8877905432282 91.504 0.28738 85.328 85.165 85.452 -6.1757 33 15 3 0 0 0 2.8549E-06 1 60479 60479 128.58 104.56 1 17707000 72184 1536 48235 49285 84023 84023 0.1440963734773959 VPRQALQLAR 10 Unmodified _VPRQALQLAR_ 0 0 0 REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF REV__ENST00000473223.5_1_1:155184463-155187072:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5719299316406 3 384.571768 1150.69348 1.0987 0.00042255 -0.33553 -0.00012904 0.76321 0.00029351 384.57163810945104 43.272 0.86748 38.508 38.225 39.092 -4.7648 172 57 4 0 0 0 0.52888 1 26375 26375 8.9762 0 1 494230000 + 72185 27534 48236 49286 84024 84024 0.12415607136813378 VPRQPRQLYH 10 Unmodified _VPRQPRQLYH_ 0 0 0 REV__ENST00000472605.1_1_9:35810632-35811933:-|nuORF REV__ENST00000472605.1_1_9:35810632-35811933:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.9100646972656 3 431.910672 1292.71019 0.23117 9.9843E-05 -1.4635 -0.00063212 -1.2324 -0.00053228 431.90965595375985 28.888 0.14581 28.918 28.821 28.967 0.030106 7 5 2 0 0 0 0.7191 1 15074 15074 0.77653 0.078866 1 1038700 + 72186 27522 48237 49287 84025 84025 0.07554108022759465 VPRQPTVTSV 10 Unmodified _VPRQPTVTSV_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.3112182617188 2 542.31148 1082.60841 -0.63351 -0.00034356 0.19457 0.00010552 -0.43894 -0.00023804 542.3117363885057 30.253 0.14263 30.253 30.181 30.324 0 11 6 2 0 0 0 0.1899 1 15728 15728 34.932 13.395 1 1003900 72187 6952 48238 49288 84026 84026 0.07040816880339662 VPRQPTVTSV 10 Unmodified _VPRQPTVTSV_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3128051757812 2 542.31148 1082.60841 0.42662 0.00023136 1.1946 0.00064783 1.6212 0.00087919 542.3122909282306 30.292 0.27719 30.211 30.082 30.359 -0.080429 22 10 3 0 0 0 0.047829 1 15696 15696 59.368 21.193 1 3973400 72188 6952 48238 49288 84027 84027 0.07040816880339662 VPRQPTVTSV 10 Unmodified _VPRQPTVTSV_ 0 0 0 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 ENSG00000163110|ENST00000317968|PDLIM5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.31148 1082.60841 -0.038038 -2.0628E-05 2.7591 0.0014963 2.7211 0.0014757 542.313295491196 29.986 0.14404 30.016 29.97 30.114 0.030106 -0.14428 0.0020102 NaN 59.368 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 567300 72189 6952 48238 49288 0.07040816880339662 VPRQRQSSY 9 Unmodified _VPRQRQSSY_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7947998046875 2 560.796529 1119.5785 0.23991 0.00013454 -2.7169 -0.0015236 -2.4769 -0.0013891 560.7947331986471 41.812 0.20145 41.811 41.743 41.944 -0.0017929 12 9 2 0 0 0 0.48152 1 22418 22418 8.5933 2.2392 1 4051900 + 72190 18599 48239 49289 84028 84028 0.023498779350120458 VPRQRQSSY 9 Unmodified _VPRQRQSSY_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.796529 1119.5785 0.061746 3.4627E-05 -4.6847 -0.0026272 -4.623 -0.0025925 561.2952034330938 42.105 0.36064 41.799 41.663 42.023 -0.30682 -0.005975 -0.00045248 NaN 8.5933 23 17 2 NaN NaN NaN NaN 0 NaN NaN 0 16091000 + 72191 18599 48239 49289 0.023498779350120458 VPRQRQSSY 9 Unmodified _VPRQRQSSY_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.796529 1119.5785 0.23991 0.00013454 -2.7169 -0.0015236 -2.4769 -0.0013891 560.7947331986471 41.812 0.20145 41.811 41.743 41.944 -0.0017929 0.005975 0.0017546 NaN 8.5933 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4051900 + 72192 18599 48239 49289 0.023498779350120458 VPRRKRRNR 9 Unmodified _VPRRKRRNR_ 0 0 0 ENSG00000168135|ENST00000303592|KCNJ4 ENSG00000168135|ENST00000303592|KCNJ4 ENSG00000168135|ENST00000303592|KCNJ4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.2650756835938 3 413.265672 1236.77519 NaN NaN NaN NaN NaN NaN NaN 33.469 1 33.309 32.809 33.809 -0.15918 0 0 0 0.85737 1 17458 17458 0.26902 0.1097 1 72193 7721 48240 49290 84029 84029 0.1662714733924986 VPRRRDPN 8 Unmodified _VPRRRDPN_ 0 0 0 nc|ENSG00000007174|Q9NYC9-2|DNAH9;ENSG00000007174|ENST00000262442|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 nc|ENSG00000007174|Q9NYC9-2|DNAH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1009.569519042969 1 1009.56499 1008.55771 -0.37712 -0.00038072 -0.23508 -0.00023733 -0.6122 -0.00061805 1009.567307600422 34.596 0.12637 34.405 34.351 34.477 -0.19131 8 5 2 0 0 0 0.80975 1 18102 18102 0.79363 0 1 1595200 72194 358 48241 49291 84030 84030 0.05377332345983632 VPRRRQQR 8 Unmodified _VPRRRQQR_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3079223632812 2 548.333947 1094.65334 NaN NaN NaN NaN NaN NaN NaN 100.71 1 100.66 100.16 101.16 -0.04216 0 0 0 0.97444 1 55946 55946 0.79363 0 1 72195 9083 48242 49292 84031 84031 0.10980105256885508 VPRRSFFEL 9 Unmodified _VPRRSFFEL_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2169494628906 3 384.217102 1149.62948 -0.044589 -1.7132E-05 0.31507 0.00012106 0.27048 0.00010392 384.2172146260932 53.291 0.31753 53.228 53.044 53.361 -0.063419 41 15 4 0 0 0 0.46162 1 28966 28966 9.544 3.3521 1 6842700 72196 9670 48243 49293 84032 84032 0.060648269798548426 VPRRSFFELL 10 Unmodified _VPRRSFFELL_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.9120178222656 3 421.91179 1262.71354 0.24877 0.00010496 -0.93965 -0.00039645 -0.69089 -0.00029149 422.2454072349246 69.934 0.42346 69.965 69.806 70.229 0.030914 45 21 3 0 0 0 0.47059 1 38465 38465 17.863 6.3453 1 12561000 72197 9670 48244 49294 84033 84033 0.09269358076767276 VPRRSLPQL 9 Unmodified _VPRRSLPQL_ 0 0 0 ENST00000604872.5_1_4:153456099-153456309:-|nuORF;ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3298950195312 2 533.330008 1064.64546 -0.11413 -6.0869E-05 -0.086851 -4.632E-05 -0.20098 -0.00010719 533.3300100977149 32.465 0.27154 32.495 32.319 32.591 0.029747 23 10 3 0 0 0 0.024882 1 17028 17028 58.679 2.5018 1 6594400 72198 11417 48245 49295 84034 84034 0.1157253321675853 VPRRSLPQL 9 Unmodified _VPRRSLPQL_ 0 0 0 ENST00000604872.5_1_4:153456099-153456309:-|nuORF;ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8888244628906 3 355.889097 1064.64546 -0.22613 -8.0477E-05 -0.1163 -4.1391E-05 -0.34243 -0.00012187 355.8890033587646 32.444 0.27566 32.474 32.341 32.617 0.029747 25 10 3 0 0 0 0.16226 1 17029 17029 19.362 8.5624 1 4985500 72199 11417 48245 49295 84035 84035 0.1157253321675853 VPRRSLPQL 9 Unmodified _VPRRSLPQL_ 0 0 0 ENST00000604872.5_1_4:153456099-153456309:-|nuORF;ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3297119140625 2 533.330008 1064.64546 0.55969 0.0002985 -0.63709 -0.00033978 -0.077397 -4.1278E-05 533.3297081418424 36.555 0.38081 32.272 32.143 32.524 -4.2835 36 23 2 0 0 0 0.46501 1 21316 21316 9.3831 1.2276 1 17100000 72200 11417 48245 49295 84036 84036 0.1157253321675853 VPRRSLPQL 9 Unmodified _VPRRSLPQL_ 0 0 0 ENST00000604872.5_1_4:153456099-153456309:-|nuORF;ENST00000281708.8_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF ENST00000604872.5_1_4:153456099-153456309:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 355.8889770507812 3 355.889097 1064.64546 1.3145 0.00046783 -0.12866 -4.579E-05 1.1859 0.00042204 355.88904112401735 36.513 0.35139 32.23 32.173 32.524 -4.2835 37 21 2 0 0 0 0.095405 1 21353 21353 31.268 1.4278 1 13897000 72201 11417 48245 49295 84037 84037 0.1157253321675853 VPRRTTQFH 9 Unmodified _VPRRTTQFH_ 0 0 0 ENST00000465045.5_1_13:50092232-50096196:+|nuORF ENST00000465045.5_1_13:50092232-50096196:+|nuORF ENST00000465045.5_1_13:50092232-50096196:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.6892700195312 3 381.212351 1140.61522 0.026646 1.0158E-05 -0.37544 -0.00014312 -0.3488 -0.00013297 381.21221514283474 29.315 0.42752 29.345 29.079 29.507 0.030104 32 19 3 0 0 0 0.20728 1 15383 15383 5.2969 0 1 16339000 72202 13727 48246 49296 84038 84038 0.050541745515374714 VPRSASVLL 9 Unmodified _VPRSASVLL_ 0 0 0 ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.2923583984375 2 471.292559 940.570566 0.041596 1.9604E-05 -0.17827 -8.4016E-05 -0.13667 -6.4412E-05 471.2923592727219 45.72 0.29587 45.692 45.549 45.844 -0.028011 31 14 3 0 0 0 0.091924 1 24546 24546 34.932 6.4452 1 14435000 72203 7508 48247 49297 84039 84039 0.09790350685523208 VPRSASVLL 9 Unmodified _VPRSASVLL_ 0 0 0 ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3 ENSG00000166557|ENST00000299705|TMED3 ENSG00000166557|ENST00000299705|TMED3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 471.292559 940.570566 0.28366 0.00013368 -0.12646 -5.9602E-05 0.15719 7.4083E-05 471.29250228743797 46.063 0.24738 45.727 45.553 45.8 -0.33664 0.017539 2.3041E-05 NaN 34.932 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 9365200 72204 7508 48247 49297 0.09790350685523208 VPRSGKPAEL 10 Unmodified _VPRSGKPAEL_ 0 0 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53259774-53260053:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3069458007812 2 527.306198 1052.59784 1.1853 0.00062504 0.25685 0.00013544 1.4422 0.00076048 527.3063781200981 20.632 0.35693 17.939 17.723 18.08 -2.693 36 21 2 0 0 0 0.10406 2 11026 10924;11026 45.74 12.954 1 4118800 72205 7097 48248 49298 84040;84041 84041 0.07364834225904815 VPRSIPNL 8 Unmodified _VPRSIPNL_ 0 0 0 ENSG00000094631|ENST00000334136|HDAC6;ENST00000476625.5_1_X:48660534-48664079:+|nuORF;ENST00000489352.5_1_X:48660634-48664079:+|nuORF;ENST00000481929.5_1_X:48660630-48664079:+|nuORF;ENST00000477528.5_1_X:48660534-48664079:+|nuORF;ENST00000465269.5_1_X:48660931-48664079:+|nuORF;ENST00000462730.5_1_X:48660634-48664079:+|nuORF ENSG00000094631|ENST00000334136|HDAC6 ENSG00000094631|ENST00000334136|HDAC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2717590332031 2 448.271627 894.528701 -0.5541 -0.00024839 0.366 0.00016407 -0.1881 -8.4319E-05 448.27177008696475 36.079 0.40884 35.829 35.638 36.046 -0.2497 46 18 3 0 0 0 0.52622 1 18880 18880 32.305 0.18852 1 20348000 72206 1635 48249 49299 84042 84042 0.07721794996984954 VPRSKAHG 8 Unmodified _VPRSKAHG_ 0 0 0 REV__ENSG00000171560|ENST00000403106|FGA REV__ENSG00000171560|ENST00000403106|FGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2462768554688 2 426.245944 850.477334 0.45244 0.00019285 0.61379 0.00026162 1.0662 0.00045448 426.24617212318077 78.845 0.38522 78.9 78.652 79.038 0.05497 23 14 2 0 0 0 0.80975 1 43593 43593 0.79363 0 1 1399700 + 72207 22575 48250 49300 84043 84043 0.046114710229517186 VPRSKALEV 9 Unmodified _VPRSKALEV_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.803955078125 2 499.803291 997.59203 -0.034263 -1.7125E-05 0.64872 0.00032423 0.61446 0.00030711 499.8035268751787 23.342 0.24466 23.342 23.182 23.427 0 28 11 3 0 0 0 0.091924 1 11873 11873 34.932 8.0484 1 2924900 72208 9767 48251 49301 84044 84044 0.09313735714226823 VPRSKALEV 9 Unmodified _VPRSKALEV_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.8031616210938 2 499.803291 997.59203 0.21391 0.00010691 -0.23419 -0.00011705 -0.02028 -1.0136E-05 499.8031572797828 26.055 0.40078 23.104 22.88 23.281 -2.9511 61 25 3 0 0 0 0.11784 1 14329 14329 31.268 0.6318 1 49056000 72209 9767 48251 49301 84045 84045 0.09313735714226823 VPRSKALEV 9 Unmodified _VPRSKALEV_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;ENST00000605322.1_1_10:5136636-5141836:+|nuORF ENSG00000196139|ENST00000380554|AKR1C3 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 499.803291 997.59203 -0.034263 -1.7125E-05 0.64872 0.00032423 0.61446 0.00030711 499.8035268751787 23.342 0.24466 23.342 23.182 23.427 0 0.11881 0.00047623 NaN 34.932 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2924900 72210 9767 48251 49301 0.09313735714226823 VPRSPQVI 8 Unmodified _VPRSPQVI_ 0 0 0 REV__ENSG00000100888|ENST00000646647|CHD8 REV__ENSG00000100888|ENST00000646647|CHD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 448.2720642089844 2 448.271627 894.528701 0.39801 0.00017841 0.029064 1.3028E-05 0.42707 0.00019144 448.2716622474171 35.947 0.33744 35.947 35.776 36.113 0 37 16 3 0 0 0 0.40602 1 18994 18994 43.858 3.9086 1 10641000 + 72211 18112 48252 49302 84046 84046 0.07721794997007692 VPRSPQVI 8 Unmodified _VPRSPQVI_ 0 0 0 REV__ENSG00000100888|ENST00000646647|CHD8 REV__ENSG00000100888|ENST00000646647|CHD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7728271484375 2 448.271627 894.528701 0.27568 0.00012358 -1.0136 -0.00045439 -0.73797 -0.00033081 448.2716494971266 35.761 0.14104 35.786 35.723 35.864 0.024971 11 6 2 0 0 0 0.61462 1 18936 18936 24.674 1.5255 1 2338500 + 72212 18112 48252 49302 84047 84047 0.07721794997007692 VPRSPQVI 8 Unmodified _VPRSPQVI_ 0 0 0 REV__ENSG00000100888|ENST00000646647|CHD8 REV__ENSG00000100888|ENST00000646647|CHD8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 448.271627 894.528701 0.27568 0.00012358 -1.0136 -0.00045439 -0.73797 -0.00033081 448.2716494971266 35.761 0.14104 35.786 35.723 35.864 0.024971 -0.044507 -0.001011 NaN 43.858 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2338500 + 72213 18112 48252 49302 0.07721794997007692 VPRSSSMVL 9 Unmodified _VPRSSSMVL_ 0 0 0 nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 nc|ENSG00000136536|Q9H992-2|MARCHF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.268798828125 2 488.268227 974.521901 0.22538 0.00011004 0.75457 0.00036843 0.97995 0.00047848 488.26871770118856 41.412 0.61111 36.804 36.484 37.095 -4.6079 72 39 2 0 0 0 0.040683 2 24883 24883;25023 49.554 21.067 1 69346000 72214 4833 48253 49303 84048;84049 84048 0.03362114054118592 VPRSVMLALY 10 Unmodified _VPRSVMLALY_ 0 0 0 REV__nc|ENSG00000140995|Q6ZN54-4|DEF8;REV__ENST00000452760.2_1_17:20516367-20517318:+|nuORF REV__nc|ENSG00000140995|Q6ZN54-4|DEF8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.217041015625 3 383.554727 1147.64235 0.58459 0.00022422 4.3525 0.0016694 4.9371 0.0018936 383.55745908483436 28.51 0.10436 28.448 28.368 28.473 -0.062159 8 3 3 0 0 0 0.23821 1 14721 14721 2.086 0 1 874330 + 72215 20511;27224 48254 49304 84050 84050 0.07443522047719853 VPRTAENFRAL 11 Unmodified _VPRTAENFRAL_ 0 0 0 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 ENSG00000153201|ENST00000283195|RANBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.2383728027344 3 425.238566 1272.69387 -0.44305 -0.0001884 -0.73674 -0.00031329 -1.1798 -0.00050169 425.238221874633 35.732 0.19073 35.51 35.43 35.621 -0.2224 17 7 3 0 0 0 0.65538 1 18742 18742 7.0341 5.1066 1 2603200 72216 6246 48255 49305 84051 84051 0.06842982065995784 VPRTETIEESL 11 Unmodified _VPRTETIEESL_ 0 0 0 ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENSG00000117266|ENST00000429964|CDK18 ENSG00000117266|ENST00000429964|CDK18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 637.3346557617188 2 637.33535 1272.65615 0.62647 0.00039927 -0.12293 -7.8345E-05 0.50355 0.00032093 637.335308417458 42.923 0.22927 42.923 42.776 43.006 0 32 11 3 0 0 0 0.0011228 1 23247 23247 81.915 30.5 1 14310000 72217 3292 48256 49306 84052 84052 0.030724262898502275 VPRTETIEESL 11 Unmodified _VPRTETIEESL_ 0 0 0 ENSG00000117266|ENST00000429964|CDK18;nc|ENSG00000117266|Q07002-3|CDK18 ENSG00000117266|ENST00000429964|CDK18 ENSG00000117266|ENST00000429964|CDK18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3325805664062 2 637.33535 1272.65615 0.7018 0.00044728 -0.78429 -0.00049985 -0.082483 -5.2569E-05 637.3346066915288 48.736 0.25168 43.34 43.12 43.371 -5.3961 25 14 2 0 0 0 0.0086238 1 30315 30315 69.338 17.923 1 19456000 72218 3292 48256 49306 84053 84053 0.030724262898502275 VPRTFSTQI 9 Unmodified _VPRTFSTQI_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7928466796875 2 524.792924 1047.57129 -0.069612 -3.6532E-05 -0.17878 -9.3824E-05 -0.24839 -0.00013036 524.7928292179523 41.315 0.20144 41.314 41.2 41.402 -0.0017929 14 9 2 0 0 0 0.08907 1 22081 22081 45.7 3.86 1 1407800 72219 9384 48257 49307 84054 84054 0.049411453345555856 VPRTHRLITL 10 Unmodified _VPRTHRLITL_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000464381.5_1_17:15935612-15961439:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MSMS AL20221201_MKP_PDAC_01 4 402.588134765625 3 402.587418 1204.74043 NaN NaN NaN NaN NaN NaN NaN 84.244 1 78.068 77.568 78.568 -6.1757 0 0 0 0.78727 1 55413 55413 12.856 4.1105 1 72220 5298 48258 49308 84055 84055 0.146244666879511 VPRTIGAEL 9 Unmodified _VPRTIGAEL_ 0 0 0 nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.281982421875 2 478.282192 954.549831 -0.34963 -0.00016722 0.082427 3.9423E-05 -0.2672 -0.0001278 478.2821371186542 41.129 0.25665 41.129 41.024 41.281 0 34 12 3 0 0 0 0.069655 1 22130 22130 40.239 0.28951 1 6771900 72221 10451 48259 49309 84056 84056 0.07073760305854648 VPRTIGAEL 9 Unmodified _VPRTIGAEL_ 0 0 0 nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.282192 954.549831 -0.0083512 -3.9942E-06 0.064591 3.0893E-05 0.05624 2.6899E-05 478.282516598891 41.473 0.21018 41.17 41.028 41.238 -0.30304 0.02045 -1.5139E-05 NaN 40.239 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1971200 72222 10451 48259 49309 0.07073760305854648 VPRTKVVYL 9 Unmodified _VPRTKVVYL_ 0 0 0 ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.8936767578125 3 358.893848 1073.65972 -0.18047 -6.477E-05 -0.36489 -0.00013096 -0.54536 -0.00019573 358.89356018088694 35.659 0.2291 35.683 35.536 35.765 0.024971 19 10 3 0 0 0 0.15882 1 18862 18862 27.223 3.4335 1 3483200 72223 6376 48260 49310 84057 84057 0.12583185645030426 VPRTKVVYL 9 Unmodified _VPRTKVVYL_ 0 0 0 ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A ENSG00000155252|ENST00000370631|PI4K2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8944396972656 3 358.893848 1073.65972 1.2142 0.00043575 0.055895 2.006E-05 1.2701 0.00045582 358.8938681967177 39.7 0.26199 35.249 35.091 35.353 -4.4509 28 16 2 0 0 0 0.21589 1 23582 23582 21.59 3.2171 1 10261000 72224 6376 48260 49310 84058 84058 0.12583185645030426 VPRVGLGL 8 Unmodified _VPRVGLGL_ 0 0 0 ENSG00000146859|ENST00000275767|TMEM140 ENSG00000146859|ENST00000275767|TMEM140 ENSG00000146859|ENST00000275767|TMEM140 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.7633056640625 2 405.763438 809.512323 -0.42671 -0.00017314 -0.50868 -0.0002064 -0.93538 -0.00037954 405.76332846204065 51.33 0.2953 51.276 51.047 51.342 -0.053871 19 14 2 0 0 0 0.63229 1 27775 27775 23.148 0 1 2434000 72225 5805 48261 49311 84059 84059 0.09994713830894852 VPRVHDVQSHF 11 Unmodified _VPRVHDVQSHF_ 0 0 0 ENST00000477264.1_1_1:9790462-9790525:-|nuORF ENST00000477264.1_1_1:9790462-9790525:-|nuORF ENST00000477264.1_1_1:9790462-9790525:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.8987426757812 3 440.898432 1319.67347 0.70655 0.00031152 0.81858 0.00036091 1.5251 0.00067243 440.8988352406053 49.21 0.20779 49.166 49.027 49.235 -0.04369 13 9 2 0 0 0 0.70701 1 26601 26601 3.0723 0 1 1600900 72226 13994 48262 49312 84060 84060 0.02641811406169836 VPRVIIEIFL 10 Unmodified _VPRVIIEIFL_ 0 0 0 REV__ENST00000280362.7_1_11:112104281-112104485:+|nuORF REV__ENST00000280362.7_1_11:112104281-112104485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.2591247558594 3 400.256787 1197.74853 NaN NaN NaN NaN NaN NaN NaN 59.41 1 58.919 58.419 59.419 -0.49079 0 0 0 1.0048 1 32321 32321 0.13989 0 1 + 72227 25189 48263 49313 84061 84061 0.15756600884697036 VPRVKMNQQ 9 Unmodified _VPRVKMNQQ_ 0 0 0 REV__ENSG00000204767|ENST00000377365|INSYN2B REV__ENSG00000204767|ENST00000377365|INSYN2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8970031738281 3 367.206209 1098.5968 0.01731 6.3562E-06 1.6986 0.00062375 1.7159 0.00063011 367.5413245413161 18.049 0.18203 18.055 17.952 18.134 0.0060482 28 11 3 0 0 0 0.2188 1 9093 9093 1.0715 0 1 1181200 + 72228 24202 48264 49314 84062 84062 0.05144296585331176 VPRYIIRY 8 Unmodified _VPRYIIRY_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3206787109375 2 540.321651 1078.62875 -0.60172 -0.00032512 -0.2428 -0.00013119 -0.84452 -0.00045631 540.3213536101927 104.5 0.044083 104.45 104.43 104.47 -0.048737 10 6 2 0 0 0 0.8104 1 58029 58029 0.69038 0.16561 1 8055300 + 72229 18769 48265 49315 84063 84063 0.09258032330808419 VPRYIIRY 8 Unmodified _VPRYIIRY_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 540.321651 1078.62875 -0.60172 -0.00032512 -0.2428 -0.00013119 -0.84452 -0.00045631 540.3213536101927 104.5 0.044083 104.45 104.43 104.47 -0.048737 0 0 NaN 0.69038 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 8055300 + 72230 18769 48265 49315 0.09258032330808419 VPRYQRFP 8 Unmodified _VPRYQRFP_ 0 0 0 nc|ENSG00000091622|Q9BZ71-2|PITPNM3;nc|ENSG00000091622|Q9BZ71-3|PITPNM3;ENSG00000091622|ENST00000262483|PITPNM3 nc|ENSG00000091622|Q9BZ71-2|PITPNM3 nc|ENSG00000091622|Q9BZ71-2|PITPNM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7940063476562 2 531.795801 1061.57705 0.11121 5.914E-05 -0.71967 -0.00038272 -0.60847 -0.00032358 531.795230027351 28.932 0.16287 28.962 28.847 29.009 0.030106 10 6 2 0 0 0 0.74163 1 15060 15060 13.508 4.1604 1 2055100 72231 1592 48266 49316 84064 84064 0.048722886368977925 VPRYVGLH 8 Unmodified _VPRYVGLH_ 0 0 0 REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF REV__ENST00000488489.5_1_20:32247922-32262169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7721252441406 2 470.771794 939.529036 0.27805 0.0001309 0.61047 0.00028739 0.88853 0.00041829 470.7718972963495 68.007 0.26872 68.032 67.9 68.168 0.025146 21 12 2 0 0 0 0.80624 1 37353 37353 2.8892 0 1 10336000 + 72232 27845 48267 49317 84065 84065 0.0568521471685699 VPSAFADIF 9 Unmodified _VPSAFADIF_ 0 0 0 REV__ENST00000525521.1_1_11:67267179-67267460:-|nuORF REV__ENST00000525521.1_1_11:67267179-67267460:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7501220703125 2 483.750193 965.485833 0.54322 0.00026278 -1.3803 -0.00066772 -0.83708 -0.00040494 483.7500377245896 75.904 0.6061 75.427 75.255 75.861 -0.47714 61 25 3 0 0 0 0.2001 1 41631 41631 23.148 5.0134 1 3239000 + 72233 18715 48268 49318 84066 84066 0.0017098014889143087 VPSALAPASQ 10 Unmodified _VPSALAPASQ_ 0 0 0 nc|ENSG00000087470|O00429-7|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;ENST00000550093.5_1_12:32884403-32890891:+|nuORF nc|ENSG00000087470|O00429-7|DNM1L nc|ENSG00000087470|O00429-7|DNM1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7554016113281 2 470.758549 939.502546 NaN NaN NaN NaN NaN NaN NaN 76.782 1 76.782 76.282 77.282 0 0 0 0 0.76313 1 42684 42684 13.906 1.3745 1 72234 1471 48269 49319 84067 84067 0.03037481034857592 VPSAQKIIL 9 Unmodified _VPSAQKIIL_ 0 0 0 ENST00000605755.5_1_1:85135569-85156059:-|nuORF ENST00000605755.5_1_1:85135569-85156059:-|nuORF ENST00000605755.5_1_1:85135569-85156059:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.2162475585938 2 484.810585 967.606617 0.95348 0.00046226 -0.28845 -0.00013984 0.66504 0.00032242 484.81033322417835 50.153 0.20369 49.761 49.627 49.83 -0.3923 14 9 2 0 0 0 0.21242 1 26925 26925 5.2307 0 1 1002600 72235 15846 48270 49320 84068 84068 0.12151807862392161 VPSAQKIIL 9 Unmodified _VPSAQKIIL_ 0 0 0 ENST00000605755.5_1_1:85135569-85156059:-|nuORF ENST00000605755.5_1_1:85135569-85156059:-|nuORF ENST00000605755.5_1_1:85135569-85156059:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 484.810585 967.606617 1.238 0.0006002 0.59676 0.00028932 1.8348 0.00088951 484.81069144202075 49.812 0.22143 49.764 49.665 49.886 -0.048828 0.0013803 0.00049961 NaN 5.2307 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 801750 72236 15846 48270 49320 0.12151807862392161 VPSAYGVVTM 10 Unmodified _VPSAYGVVTM_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.8218994140625 2 512.26261 1022.51067 0.60244 0.00030861 -0.21916 -0.00011227 0.38328 0.00019634 512.262791189358 66.287 0.43877 60.111 59.841 60.28 -6.1757 35 24 2 0 0 0 0.22327 1 43073 43073 19.257 7.6167 1 13366000 72237 7151 48271 49321 84069 84069 0.00031291959987811424 VPSDCCITFG 10 Unmodified _VPSDCCITFG_ 0 0 0 REV__nc|ENSG00000138835|P49796-5|RGS3 REV__nc|ENSG00000138835|P49796-5|RGS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7501831054688 2 521.222628 1040.4307 1.0852 0.00056565 -0.28917 -0.00015072 0.79606 0.00041493 521.221981575172 54.407 0.33078 54.407 54.197 54.528 0 21 14 2 0 0 0 0.22667 1 30248 30248 15.847 1.2655 1 875530 + 72238 20378 48272 49322 84070 84070 -0.0878951770553158 VPSDDIFII 9 Unmodified _VPSDDIFII_ 0 0 0 REV__ENST00000504191.1_1_6:86257184-86259466:-|nuORF REV__ENST00000504191.1_1_6:86257184-86259466:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2786865234375 2 509.776408 1017.53826 0.33523 0.00017089 0.82944 0.00042283 1.1647 0.00059372 509.77661424656367 79.81 0.42539 79.81 79.588 80.013 0 40 19 3 0 0 0 0.54444 1 44270 44270 4.756 0 1 1158400 + 72239 28049 48273 49323 84071 84071 0.030195184918625273 VPSDHTNET 9 Unmodified _VPSDHTNET_ 0 0 0 ENST00000529492.5_1_11:102272638-102323261:-|nuORF;nc|ENSG00000152558|Q8N131-2|TMEM123;ENSG00000152558|ENST00000398136|TMEM123 ENST00000529492.5_1_11:102272638-102323261:-|nuORF ENST00000529492.5_1_11:102272638-102323261:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2222290039062 2 500.222528 998.430503 0.36178 0.00018097 -0.19927 -9.9678E-05 0.16251 8.1293E-05 500.22241587878534 77.76 0.30193 77.76 77.62 77.922 0 34 14 3 0 0 0 0.48152 1 43188 43188 8.5933 2.8329 1 1764500 72240 6197 48274 49324 84072 84072 -0.06877478109527146 VPSDHTNET 9 Unmodified _VPSDHTNET_ 0 0 0 ENST00000529492.5_1_11:102272638-102323261:-|nuORF;nc|ENSG00000152558|Q8N131-2|TMEM123;ENSG00000152558|ENST00000398136|TMEM123 ENST00000529492.5_1_11:102272638-102323261:-|nuORF ENST00000529492.5_1_11:102272638-102323261:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 500.222528 998.430503 -0.71288 -0.0003566 1.4768 0.00073871 0.7639 0.00038212 500.22319766408344 78.23 0.207 77.744 77.657 77.864 -0.48596 -0.0081937 0.0013134 NaN 8.5933 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 336030 72241 6197 48274 49324 -0.06877478109527146 VPSDPALF 8 Unmodified _VPSDPALF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.2236633300781 2 423.223811 844.433069 NaN NaN NaN NaN NaN NaN NaN 77.428 1 77.428 76.928 77.928 0 0 0 0 0.50394 1 43042 43042 40.449 8.3316 1 72242 873 48275 49325 84073 84073 0.004630220860804002 VPSDPALF 8 Unmodified _VPSDPALF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 845.44287109375 1 845.440346 844.433069 -1.3675 -0.0011562 0.406 0.00034325 -0.96153 -0.00081292 845.4407027770375 77.884 0.42552 77.401 77.166 77.591 -0.4826 77 32 3 0 0 0 0.44122 1 42552 42552 40.449 0 1 17898000 72243 873 48275 49325 84074 84074 0.004630220860804002 VPSDPALF 8 Unmodified _VPSDPALF_ 0 0 0 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 ENSG00000064313|ENST00000378164|TAF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2240905761719 2 423.223811 844.433069 NaN NaN NaN NaN NaN NaN NaN 77.834 1 77.351 76.851 77.851 -0.4826 0 0 0 0.50394 1 42614 42614 40.449 14.107 1 72244 873 48275 49325 84075 84075 0.004630220860804002 VPSDRLALL 9 Unmodified _VPSDRLALL_ 0 0 0 ENST00000439220.6_1_15:75074475-75090608:+|nuORF;ENST00000569462.5_1_15:75075012-75090608:+|nuORF ENST00000439220.6_1_15:75074475-75090608:+|nuORF ENST00000439220.6_1_15:75074475-75090608:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2977905273438 2 492.297842 982.581131 NaN NaN NaN NaN NaN NaN NaN 58.046 1 57.556 57.056 58.056 -0.48974 0 0 0 0.25233 1 31553 31553 27.629 8.3718 1 72245 13370 48276 49326 84076 84076 0.08914333339930636 VPSDSAITY 9 Unmodified _VPSDSAITY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7349548339844 2 476.73474 951.454927 0.30699 0.00014635 -0.83768 -0.00039935 -0.5307 -0.000253 476.73438961329276 39.509 0.49321 39.509 39.282 39.775 0 41 23 2 0 0 0 0.087258 1 21145 21145 36.044 1.9418 1 3317100 72246 9828 48277 49327 84077 84077 -0.02274217956016855 VPSDSAITY 9 Unmodified _VPSDSAITY_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 952.4632568359375 1 952.462204 951.454927 -0.20801 -0.00019812 -0.1793 -0.00017078 -0.38731 -0.0003689 952.4619307682773 39.497 0.47589 39.497 39.282 39.758 0 32 22 2 0 0 0 0.0082281 1 21211 21211 92.822 39.247 1 3220600 72247 9828 48277 49327 84078 84078 -0.02274217956016855 VPSDVHCTFRS 11 Unmodified _VPSDVHCTFRS_ 0 0 0 MXRA5|p.E38D|1|0.25|ENSG00000101825|chrX:3343720-3343720|C/A|missense_variant MXRA5|p.E38D|1|0.25|ENSG00000101825|chrX:3343720-3343720|C/A|missense_variant MXRA5|p.E38D|1|0.25|ENSG00000101825|chrX:3343720-3343720|C/A|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.3267822265625 2 624.295504 1246.57646 0.21114 0.00013181 2.0978 0.0013097 2.309 0.0014415 624.7988860353194 59.057 0.064995 58.566 58.514 58.579 -0.49079 4 2 2 0 0 0 0.30139 1 32107 32107 5.7319 0 1 303350 72248 16001 48278 49328 84079 84079 -0.036969188651255536 VPSDVQKVQY 10 Unmodified _VPSDVQKVQY_ 0 0 0 nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2;nc|ENSG00000140563|Q6DN12-3|MCTP2;ENST00000456504.5_1_15:94858078-95022260:+|nuORF nc|ENSG00000140563|Q6DN12-2|MCTP2 nc|ENSG00000140563|Q6DN12-2|MCTP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.8084106445312 2 581.808771 1161.60299 -0.39853 -0.00023187 0.31438 0.00018291 -0.084153 -4.8961E-05 581.8088643367743 30.679 0.18329 30.679 30.607 30.791 0 14 8 2 0 0 0 0.45406 1 15966 15966 21.537 2.28 1 1062900 72249 5254 48279 49329 84080 84080 0.028650932978507626 VPSEDEVL 8 Unmodified _VPSEDEVL_ 0 0 0 nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-3|VCAN nc|ENSG00000038427|P13611-5|VCAN nc|ENSG00000038427|P13611-5|VCAN MSMS AL20221201_MKP_PDAC_01 4 444.2227783203125 2 444.221465 886.428378 NaN NaN NaN NaN NaN NaN NaN 75.243 1 69.067 68.567 69.567 -6.1757 0 0 0 0.93066 1 49205 49205 14.582 0 1 72250 637 48280 49330 84081 84081 -0.019379068473313055 VPSEGLYLI 9 Unmodified _VPSEGLYLI_ 0 0 0 ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF ENSG00000232810|ENST00000449264|TNF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7816467285156 2 495.778951 989.543348 1.0662 0.00052861 0.1074 5.3245E-05 1.1736 0.00058185 495.779108441826 83.589 0.38306 77.413 77.125 77.508 -6.1757 30 19 2 0 0 0 0.087258 1 55031 55031 36.044 5.8194 1 13443000 72251 10628 48281 49331 84082 84082 0.04815822354487409 VPSELPECSI 10 Unmodified _VPSELPECSI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2606811523438 2 537.262807 1072.51106 0.0022302 1.1982E-06 -3.7244 -0.002001 -3.7222 -0.0019998 537.2607077391351 56.125 0.13454 50.148 50.052 50.187 -5.9769 11 7 2 0 0 0 0.31022 1 35808 35808 26.884 1.4843 1 23784000 + 72252 22772 48282 49332 84083 84083 -0.02229333110835796 VPSELPECSI 10 Unmodified _VPSELPECSI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 537.262807 1072.51106 0.43301 0.00023264 -1.5851 -0.00085161 -1.1521 -0.00061897 537.2619604014959 50.122 0.14744 50.122 49.986 50.134 0 -0.012778 0.00083355 NaN 26.884 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 7222000 + 72253 22772 48282 49332 -0.02229333110835796 VPSELPECSI 10 Unmodified _VPSELPECSI_ 0 0 0 REV__ENSG00000174175|ENST00000263686|SELP REV__ENSG00000174175|ENST00000263686|SELP MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 537.262807 1072.51106 0.0022302 1.1982E-06 -3.7244 -0.002001 -3.7222 -0.0019998 537.2607077391351 56.125 0.13454 50.148 50.052 50.187 -5.9769 0.012778 -0.0014652 NaN 26.884 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 23784000 + 72254 22772 48282 49332 -0.02229333110835796 VPSEPIWEE 9 Unmodified _VPSEPIWEE_ 0 0 0 ENSG00000178726|ENST00000377103|THBD ENSG00000178726|ENST00000377103|THBD ENSG00000178726|ENST00000377103|THBD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2625122070312 2 543.261122 1084.50769 0.1823 9.9036E-05 -0.0018117 -9.8421E-07 0.18049 9.8052E-05 543.2610742904843 94.144 0.5738 93.723 93.457 94.031 -0.42044 118 30 5 0 0 0 0.28047 2 51333 51333;51433 18.135 3.2967 1 45590000 72255 8769 48283 49333 84084;84085 84084 -0.03118259893199138 VPSEQSTDFML 11 Unmodified _VPSEQSTDFML_ 0 0 0 REV__nc|ENSG00000138162|O95359-3|TACC2 REV__nc|ENSG00000138162|O95359-3|TACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.291015625 2 627.289553 1252.56455 -1.0023 -0.00062875 1.2492 0.00078362 0.24689 0.00015487 627.2904737039886 77.937 0.46831 77.454 77.143 77.611 -0.4826 63 34 2 0 0 0 0.30985 1 42646 42646 26.268 4.7312 1 6746100 + 72256 20310 48284 49334 84086 84086 -0.05162580398950922 VPSEVHCTF 9 Carbamidomethyl (C) _VPSEVHC(Carbamidomethyl (C))TF_ VPSEVHC(1)TF VPSEVHC(78)TF 0 1 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2479858398438 2 538.247492 1074.48043 0.56968 0.00030663 -0.90843 -0.00048896 -0.33875 -0.00018233 538.2472233789576 38.326 0.38465 33.957 33.765 34.15 -4.3689 60 23 3 0 0 0 0.010818 2 22620 22494;22620 78.149 53.476 1 50867000 72257 1992 48285 49335 84087;84088 84088 197 -0.053830667052125136 VPSFLLMLL 9 Unmodified _VPSFLLMLL_ 0 0 0 REV__ENST00000382313.2_1_16:2787232-2787705:-|nuORF REV__ENST00000382313.2_1_16:2787232-2787705:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.8102416992188 2 516.811739 1031.60893 NaN NaN NaN NaN NaN NaN NaN 98.921 1 92.746 92.246 93.246 -6.1757 0 0 0 0.20498 1 65727 65727 30.225 15.387 1 + 72258 26346 48286 49336 84089 84089 0.09438520275830342 VPSFVFGF 8 Unmodified _VPSFVFGF_ 0 0 0 ENST00000356648.5_1_1:153949181-153949451:-|nuORF ENST00000356648.5_1_1:153949181-153949451:-|nuORF ENST00000356648.5_1_1:153949181-153949451:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.5724792480469 2 450.236722 898.45889 NaN NaN NaN NaN NaN NaN NaN 84.669 1 78.494 77.994 78.994 -6.1757 0 0 0 0.9185 1 55716 55716 17.087 3.5787 1 72259 12095 48287 49337 84090 84090 0.005599163283932285 VPSGRLACDT 10 Unmodified _VPSGRLACDT_ 0 0 0 REV__nc|ENSG00000104055|O43548-2|TGM5 REV__nc|ENSG00000104055|O43548-2|TGM5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2910766601562 2 509.752941 1017.49133 0.37358 0.00019043 -1.6393 -0.00083563 -1.2657 -0.0006452 509.752153422695 68.086 0.56859 67.604 67.255 67.823 -0.48218 43 26 2 0 0 0 0.23952 1 37102 37102 2.9952 0.69251 1 6176400 + 72260 18334 48288 49338 84091 84091 -0.01671664330956446 VPSHCLPCF 9 Unmodified _VPSHCLPCF_ 0 0 0 REV__ENSG00000118965|ENST00000281405|WDR35 REV__ENSG00000118965|ENST00000281405|WDR35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7312316894531 2 501.730423 1001.44629 0.41809 0.00020977 0.93821 0.00047073 1.3563 0.0006805 501.73078297864737 75.813 0.42834 75.813 75.571 75.999 0 45 18 3 0 0 0 0.30562 1 42185 42185 16.942 3.0362 1 3670500 + 72261 19176 48289 49339 84092 84092 -0.054371863978303736 VPSHLYKVI 9 Unmodified _VPSHLYKVI_ 0 0 0 nc|ENSG00000157036|Q9Y2C4-3|EXOG;nc|ENSG00000157036|Q9Y2C4-4|EXOG;ENSG00000157036|ENST00000287675|EXOG nc|ENSG00000157036|Q9Y2C4-3|EXOG nc|ENSG00000157036|Q9Y2C4-3|EXOG MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5471496582031 3 352.546449 1054.61752 1.0331 0.00036423 -0.80355 -0.00028329 0.22959 8.094E-05 352.5460834072341 40.144 1.8893 35.614 35.188 37.078 -4.5294 454 131 6 0 0 0 0.2546 1 24752 24752 19.362 0.98885 1 7750699999.999999 72262 6495 48290 49340 84093 84093 0.09239210236660256 VPSKDLLF 8 Unmodified _VPSKDLLF_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-2|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.531005859375 1 918.529495 917.522219 0.25975 0.00023859 0.93535 0.00085915 1.1951 0.0010977 918.5300143345087 83.727 0.43679 83.23 83.007 83.443 -0.49751 25 17 2 0 0 0 0.80676 1 45908 45908 2.5775 0 1 576480 72263 3090 48291 49341 84094 84094 0.06015857045611028 VPSKDLTL 8 Unmodified _VPSKDLTL_ 0 0 0 nc|ENSG00000170054|Q86WD7-4|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9 nc|ENSG00000170054|Q86WD7-4|SERPINA9 nc|ENSG00000170054|Q86WD7-4|SERPINA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7582397460938 2 436.758018 871.501483 0.44727 0.00019535 -1.0066 -0.00043963 -0.5593 -0.00024428 436.75757531896164 52.621 0.19357 52.187 52.023 52.216 -0.43367 16 9 2 0 0 0 0.55032 1 28422 28422 30.225 0 1 1862700 72264 7945 48292 49342 84095 84095 0.060592666659431416 VPSKHPLF 8 Unmodified _VPSKHPLF_ 0 0 0 nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 nc|ENSG00000182504|Q8IW35-2|CEP97 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 462.7684631347656 2 462.76872 923.522887 -0.012318 -5.7002E-06 -0.63504 -0.00029388 -0.64736 -0.00029958 462.7683830584211 35.71 0.40968 35.735 35.581 35.99 0.024971 57 19 4 0 0 0 0.57045 1 18950 18950 28.487 3.813 1 97525000 72265 9060 48293 49343 84096 84096 0.05806696485319662 VPSKKLLLG 9 Unmodified _VPSKKLLLG_ 0 0 0 REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF REV__ENST00000534047.5_1_11:10518329-10527428:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8217163085938 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 10.055 1 9.9658 9.4658 10.466 -0.08967 0 0 0 0.8622 1 4911 4911 0 0 1 + 72266 19935 48294 49344 84097 84097 0.1486839824206072 VPSKPPMSL 9 Unmodified _VPSKPPMSL_ 0 0 0 ENSG00000154945|ENST00000285243|ANKRD40 ENSG00000154945|ENST00000285243|ANKRD40 ENSG00000154945|ENST00000285243|ANKRD40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2681274414062 2 478.267696 954.520839 1.1359 0.00054327 0.59189 0.00028308 1.7278 0.00082635 478.26822163157885 47.334 0.58345 42.253 41.99 42.573 -5.0805 72 37 3 0 0 0 0.15471 1 29435 29435 27.629 9.4938 1 34196000 72267 6358 48295 49345 84098 84098 0.041758996852195196 VPSKVLCVL 9 Carbamidomethyl (C) _VPSKVLC(Carbamidomethyl (C))VL_ VPSKVLC(1)VL VPSKVLC(100)VL 0 1 0 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 ENSG00000172478|ENST00000388934|MAB21L4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.8040771484375 2 507.804445 1013.59434 0.92183 0.00046811 -1.2958 -0.000658 -0.37395 -0.0001899 507.8039785781794 62.317 0.71804 56.142 55.89 56.608 -6.1757 64 38 2 0 0 0 0.008513 2 40116 40116;40248 99.755 41.076 1 37802000 72268 8225 48296 49346 84099;84100 84099 791 0.08808448127695101 VPSLAAGLLF 10 Unmodified _VPSLAAGLLF_ 0 0 0 ENST00000466421.5_1_6:10723434-10730896:+|nuORF;ENSG00000111843|ENST00000229563|TMEM14C;ENSG00000137210|ENST00000379542|TMEM14B;ENST00000480194.5_1_6:10748006-10756748:+|nuORF ENST00000466421.5_1_6:10723434-10730896:+|nuORF ENST00000466421.5_1_6:10723434-10730896:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 987.5887451171875 1 987.587344 986.580068 1.2973 0.0012812 0.41858 0.00041339 1.7158 0.0016945 987.5878530307135 101.07 0.073677 94.893 94.85 94.923 -6.1757 6 3 2 0 0 0 4.3778E-05 1 67748 67748 120.45 76.592 1 6605600 72269 2835 48297 49347 84101 84101 0.08624118971044936 VPSLATHSAY 10 Unmodified _VPSLATHSAY_ 0 0 0 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2 GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant GRHL2|p.R504Lfs*10|1|0.13|ENSG00000083307|chr8:101636920-101636921|-/CTCT|frameshift_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2203979492188 2 523.269281 1044.52401 -0.21866 -0.00011442 -1.6814 -0.00087984 -1.9001 -0.00099426 523.2683556040561 34.583 0.19617 34.583 34.518 34.714 0 15 9 2 0 0 0 0.23634 1 18249 18249 3.5965 0.31518 1 1088000 72270 1363 48298 49348 84102 84102 0.0035286606357658457 VPSLEDLAEEF 11 Unmodified _VPSLEDLAEEF_ 0 0 0 REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3377685546875 2 624.803351 1247.59215 0.42154 0.00026338 3.6807 0.0022997 4.1022 0.0025631 624.8052400329387 75.074 0.57323 75.12 74.899 75.472 0.045967 39 27 2 0 0 0 0.27694 1 41581 41581 13.906 7.7003 1 5112700 + 72271 23132 48299 49349 84103 84103 -0.02174353867121681 VPSLEPNPN 9 Unmodified _VPSLEPNPN_ 0 0 0 REV__ENST00000355415.6_1_19:3544204-3544516:-|nuORF REV__ENST00000355415.6_1_19:3544204-3544516:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2709350585938 2 483.748182 965.481811 0.46158 0.00022329 -0.57172 -0.00027657 -0.11014 -5.3278E-05 483.7477871679271 51.907 0.37696 46.173 45.986 46.363 -5.7345 40 25 2 0 0 0 0.2001 1 32571 32571 23.148 0 1 60561000 + 72272 25808 48300 49350 84104 84104 -0.002311093448156498 VPSLGSVFL 9 Unmodified _VPSLGSVFL_ 0 0 0 ENST00000546869.1_1_12:113614643-113615134:-|nuORF ENST00000546869.1_1_12:113614643-113615134:-|nuORF ENST00000546869.1_1_12:113614643-113615134:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7691345214844 2 459.768386 917.522219 0.38932 0.000179 0.58159 0.0002674 0.97091 0.00044639 459.768641299985 83.67 0.45655 83.172 82.938 83.395 -0.49751 30 18 2 0 0 0 0.39863 1 45806 45806 12.532 2.3482 1 534180 72273 15112 48301 49351 84105 84105 0.06015857045622397 VPSLLHQDL 9 Unmodified _VPSLLHQDL_ 0 0 0 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 ENSG00000103365|ENST00000309859|GGA2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.2997436523438 2 511.287474 1020.5604 0.89898 0.00045964 3.5953 0.0018383 4.4943 0.0022979 511.28820931171754 100.73 0.10786 94.555 94.515 94.623 -6.1757 12 7 2 0 0 0 0.097209 1 67400 67400 38.151 4.0487 1 19824000 72274 2134 48302 49352 84106 84106 0.05093742960275449 VPSLLLVEDL 10 Unmodified _VPSLLLVEDL_ 0 0 0 REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF REV__ENST00000426186.1_3_2:87121966-87144635:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.7755737304688 2 549.326265 1096.63798 0.42135 0.00023146 -1.8649 -0.0010244 -1.4435 -0.00079295 549.3250223410771 40.4 0.27795 35.871 35.757 36.035 -4.5294 24 16 2 0 0 0 0.23767 1 24217 24217 3.5965 3.0717 1 8765300 + 72275 26904 48303 49353 84107 84107 0.0935233610580326 VPSLQRYREL 10 Unmodified _VPSLQRYREL_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000476922.5_1_20:33464445-33514898:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.9062805175781 3 420.906816 1259.69862 -0.018493 -7.7836E-06 -0.25766 -0.00010845 -0.27615 -0.00011623 420.9067300292528 39.033 0.29778 38.746 38.585 38.882 -0.28687 27 12 3 0 0 0 0.22922 1 20559 20559 31.636 18.117 1 9482200 72276 4295 48304 49354 84108 84108 0.07915866208736588 VPSLQRYREL 10 Unmodified _VPSLQRYREL_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000476922.5_1_20:33464445-33514898:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.9059753417969 3 420.906816 1259.69862 0.10328 4.3471E-05 -0.42407 -0.00017849 -0.32079 -0.00013502 420.90676604843395 38.611 0.2831 38.623 38.455 38.738 0.011456 31 13 3 0 0 0 0.22922 1 20517 20517 31.636 18.117 1 8806000 72277 4295 48304 49354 84109 84109 0.07915866208736588 VPSLQRYREL 10 Unmodified _VPSLQRYREL_ 0 0 0 ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2;ENST00000476922.5_1_20:33464445-33514898:+|nuORF ENSG00000131069|ENST00000360596|ACSS2 ENSG00000131069|ENST00000360596|ACSS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.907958984375 3 420.906816 1259.69862 0.99287 0.00041791 -0.18968 -7.9836E-05 0.80319 0.00033807 420.90673333812265 43.24 0.37483 38.476 38.258 38.633 -4.7648 63 26 3 0 0 0 0.22922 2 26120 26120;26261 31.636 18.763 1 40390000 72278 4295 48304 49354 84110;84111 84110 0.07915866208736588 VPSNEATLQ 9 Unmodified _VPSNEATLQ_ 0 0 0 REV__ENSG00000140396|ENST00000452400|NCOA2 REV__ENSG00000140396|ENST00000452400|NCOA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 959.4873046875 1 958.484002 957.476725 0.29118 0.00027909 2.8216 0.0027044 3.1127 0.0029835 958.4880518308021 51.505 0.34069 51.505 51.302 51.642 0 35 15 3 0 0 0 0.39863 1 28387 28387 12.532 1.7076 1 3985700 + 72279 20467 48305 49355 84112 84112 -0.0037141320741511663 VPSNHRNNHI 10 Unmodified _VPSNHRNNHI_ 0 0 0 ENST00000483035.5_1_6:118886676-118973579:-|nuORF;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L ENST00000483035.5_1_6:118886676-118973579:-|nuORF ENST00000483035.5_1_6:118886676-118973579:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 594.30322265625 2 594.305052 1186.59555 NaN NaN NaN NaN NaN NaN NaN 95.675 1 89.5 89 90 -6.1757 0 0 0 0.81521 1 63377 63377 11.64 0.81637 1 72280 2838 48306 49356 84113 84113 0.00971798540808777 VPSNRTRFL 9 Unmodified _VPSNRTRFL_ 0 0 0 REV__ENSG00000094914|ENST00000209873|AAAS REV__ENSG00000094914|ENST00000209873|AAAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.8770446777344 3 363.876969 1088.60908 -0.039266 -1.4288E-05 -0.79022 -0.00028754 -0.82948 -0.00030183 363.8769186990377 39.693 0.34945 39.396 39.22 39.569 -0.29716 44 16 4 0 0 0 0.35911 1 20909 20909 14.405 0.49933 1 10832000 + 72281 17930 48307 49357 84114 84114 0.06831656320036927 VPSNRTRFL 9 Unmodified _VPSNRTRFL_ 0 0 0 REV__ENSG00000094914|ENST00000209873|AAAS REV__ENSG00000094914|ENST00000209873|AAAS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.876969 1088.60908 0.15405 5.6055E-05 -1.1751 -0.0004276 -1.0211 -0.00037154 363.8767439406367 39.42 0.26743 39.42 39.263 39.53 0 0.033894 -0.00054396 NaN 14.405 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4233700 + 72282 17930 48307 49357 0.06831656320036927 VPSNRTRFL 9 Unmodified _VPSNRTRFL_ 0 0 0 REV__ENSG00000094914|ENST00000209873|AAAS REV__ENSG00000094914|ENST00000209873|AAAS MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 363.876969 1088.60908 -0.039266 -1.4288E-05 -0.79022 -0.00028754 -0.82948 -0.00030183 363.8769186990377 39.693 0.34945 39.396 39.22 39.569 -0.29716 0.0094816 -0.00012379 NaN 14.405 44 16 4 NaN NaN NaN NaN 0 NaN NaN 0 10832000 + 72283 17930 48307 49357 0.06831656320036927 VPSPAQIMY 9 Oxidation (M) _VPSPAQIM(Oxidation (M))Y_ VPSPAQIM(1)Y VPSPAQIM(61)Y 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2550048828125 2 511.254785 1020.49502 -0.31498 -0.00016103 -1.6843 -0.00086111 -1.9993 -0.0010221 511.25440564692894 48.793 0.5155 48.793 48.47 48.986 0 58 24 4 0 0 0 0.022193 2 26749 26749;26858 61.357 25.23 1 22608000 72284 8803 48308 49358 84115;84116 84115 1487 -0.014409945570719174 VPSPAQIMY 9 Oxidation (M) _VPSPAQIM(Oxidation (M))Y_ VPSPAQIM(1)Y VPSPAQIM(61)Y 0 0 1 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2547302246094 2 511.254785 1020.49502 0.33006 0.00016875 -0.67353 -0.00034434 -0.34346 -0.0001756 511.25447809430545 49.249 0.44553 48.878 48.539 48.984 -0.37172 72 21 4 0 0 0 0.022193 1 26443 26443 61.357 25.23 1 50306000 72285 8803 48308 49358 84117 84117 1487 -0.014409945570719174 VPSPAQIMY 9 Unmodified _VPSPAQIMY_ 0 0 0 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.25830078125 2 503.257328 1004.5001 -0.60475 -0.00030435 3.2586 0.0016399 2.6538 0.0013355 503.76179935168415 60.837 0.34605 60.348 60.089 60.435 -0.48932 36 16 3 0 0 0 0.08691 1 33076 33076 36.127 16.688 1 5223700 72286 8803 48308 49359 84118 84118 -0.001966906944630864 VPSPAQIMY 9 Unmodified _VPSPAQIMY_ 0 0 0 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 ENSG00000179051|ENST00000375436|RCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2576599121094 2 503.257328 1004.5001 0.65558 0.00032993 -0.0065007 -3.2715E-06 0.64908 0.00032666 503.25760948200724 67.699 0.70435 61.523 61.236 61.94 -6.1757 113 40 4 0 0 0 0.042911 3 44125 43987;44125;44311 48.346 19.264 1 99843000 72287 8803 48308 49359 84119;84120;84121 84120 -0.001966906944630864 VPSPAVPKL 9 Unmodified _VPSPAVPKL_ 0 0 0 nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3;nc|ENSG00000186001|Q96II8-2|LRCH3;ENSG00000077454|ENST00000310300|LRCH4;ENST00000485071.2_1_7:100173012-100174533:-|nuORF nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000077454|ENST00000310300|LRCH4 ENSG00000077454|ENST00000310300|LRCH4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.28515625 2 454.284203 906.553853 1.3324 0.00060527 -0.42159 -0.00019152 0.91076 0.00041374 454.2837086025827 53.91 0.2644 48.044 47.947 48.211 -5.8653 20 15 2 0 0 0 0.010611 1 34215 34215 78.728 38.771 1 7668400 72288 9440;1218;4790 48309 49360 84122 84122 0.0968384979955772 VPSPEAFL 8 Unmodified _VPSPEAFL_ 0 0 0 ENSG00000146776|ENST00000419735|ATXN7L1;ENST00000464874.1_1_7:105515663-105517004:-|nuORF;nc|ENSG00000146776|Q9ULK2-2|ATXN7L1;ENST00000481880.5_1_7:105428891-105517004:-|nuORF ENSG00000146776|ENST00000419735|ATXN7L1 ENSG00000146776|ENST00000419735|ATXN7L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.231201171875 2 430.231636 858.448719 0.38174 0.00016424 -0.66665 -0.00028681 -0.28491 -0.00012258 430.2312647207423 94.146 0.38263 93.726 93.526 93.908 -0.42044 40 21 3 0 0 0 0.65867 1 51454 51454 20.871 1.4322 1 1447100 72289 5794 48310 49361 84123 84123 0.013833086031354469 VPSPPPYI 8 Unmodified _VPSPPPYI_ 0 0 0 REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF REV__ENST00000313334.12_1_1:52552599-52552851:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 435.2412719726562 2 435.242004 868.469455 NaN NaN NaN NaN NaN NaN NaN 82.076 1 75.9 75.4 76.4 -6.1757 0 0 0 0.9249 1 53901 53901 15.768 0 1 + 72290 25437 48311 49362 84124 84124 0.029958989827946425 VPSPSLTSF 9 Unmodified _VPSPSLTSF_ 0 0 0 ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF ENST00000409443.6_1_2:172016940-172017408:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7467346191406 2 467.74765 933.480748 0.35681 0.0001669 -1.87 -0.00087469 -1.5132 -0.00070779 467.7466972911244 53.314 0.18088 52.862 52.783 52.963 -0.45173 13 8 2 0 0 0 0.32871 1 28863 28863 15.847 3.3156 1 857690 72291 12962 48312 49363 84125 84125 0.011346762862899595 VPSPSVPSVL 10 Unmodified _VPSPSVPSVL_ 0 0 0 REV__ENST00000598554.1_1_19:42027644-42028339:-|nuORF REV__ENST00000598554.1_1_19:42027644-42028339:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.2857971191406 2 491.2844 980.554247 0.35738 0.00017558 0.32458 0.00015946 0.68196 0.00033504 491.2845156959114 58.048 0.4729 58.048 57.817 58.29 0 57 18 4 0 0 0 0.037795 1 32235 32235 64.236 5.5575 1 20380000 + 72292 19025 48313 49364 84126 84126 0.06319224728770223 VPSQKLLCSI 10 Unmodified _VPSQKLLCSI_ 0 0 0 REV__ENST00000220592.9_2_8:141541824-141541974:-|nuORF REV__ENST00000220592.9_2_8:141541824-141541974:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.210205078125 3 363.210849 1086.61072 -0.27609 -0.00010028 -1.4799 -0.00053751 -1.756 -0.00063779 363.2102802406006 33.972 0.51285 33.781 33.617 34.13 -0.19132 55 19 5 0 0 0 0.50944 1 17722 17722 9.544 3.3521 1 14580000 + 72293 24758 48314 49365 84127 84127 0.07087529293767147 VPSQKLLCSI 10 Unmodified _VPSQKLLCSI_ 0 0 0 REV__ENST00000220592.9_2_8:141541824-141541974:-|nuORF REV__ENST00000220592.9_2_8:141541824-141541974:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 363.210849 1086.61072 -0.56564 -0.00020545 -1.954 -0.00070973 -2.5197 -0.00091517 363.21029574283386 33.819 0.14307 33.819 33.783 33.926 0 0.04083 9.6255E-06 NaN 9.544 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1037900 + 72294 24758 48314 49365 0.07087529293767147 VPSQLSLS 8 Unmodified _VPSQLSLS_ 0 0 0 REV__ENST00000527636.5_3_11:12959014-12959116:+|nuORF REV__ENST00000527636.5_3_11:12959014-12959116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 833.4725341796875 1 830.46181 829.454533 0.18538 0.00015395 0.24198 0.00020096 0.42736 0.0003549 830.4620153996589 42.269 0.38284 42.269 42.125 42.507 0 48 18 4 0 0 0 0.80624 1 22865 22865 2.8892 0 1 29539000 + 72295 28395 48315 49366 84128 84128 0.03298407114823476 VPSRGRNP 8 Unmodified _VPSRGRNP_ 0 0 0 ENST00000397420.7_1_11:838256-838586:+|nuORF ENST00000397420.7_1_11:838256-838586:+|nuORF ENST00000397420.7_1_11:838256-838586:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 442.2047729492188 2 441.74885 881.483148 0.32747 0.00014466 0.09137 4.0363E-05 0.41884 0.00018502 441.74887726720544 23.678 0.54689 20.851 20.595 21.142 -2.8273 74 32 3 0 0 0 8.7369 1 12701 12701 5.7604 5.7604 1 28971000 72296 12822 48316 49367 84129 84129 0.037665695346163375 VPSRSSSAL 9 Unmodified _VPSRSSSAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2488708496094 2 452.248349 902.482145 -0.14209 -6.426E-05 -0.065005 -2.9398E-05 -0.2071 -9.3659E-05 452.24832811015625 19.244 0.34075 19.244 19.094 19.434 0 39 21 2 0 0 0 0.08691 2 9665 9568;9665 36.127 10.728 1 2629900 72297 8367 48317 49368 84130;84131 84131 0.027003103750644186 VPSRSSSAL 9 Unmodified _VPSRSSSAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 452.2492370605469 2 452.248349 902.482145 1.3153 0.00059484 -1.0222 -0.00046229 0.2931 0.00013255 452.2480302922823 21.229 0.35325 18.536 18.339 18.692 -2.693 40 23 2 0 0 0 0.07087 1 11407 11407 39.95 39.95 1 6423400 72298 8367 48317 49368 84132 84132 0.027003103750644186 VPSRSSSAL 9 Unmodified _VPSRSSSAL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 452.248349 902.482145 -0.14209 -6.426E-05 -0.065005 -2.9398E-05 -0.2071 -9.3659E-05 452.24832811015625 19.244 0.34075 19.244 19.094 19.434 0 0 0 NaN 36.127 39 21 2 NaN NaN NaN NaN 0 NaN NaN 0 2629900 72299 8367 48317 49368 0.027003103750644186 VPSSDPIVF 9 Unmodified _VPSSDPIVF_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 960.5043334960938 1 960.503674 959.496398 0.20492 0.00019683 0.091803 8.8177E-05 0.29672 0.000285 960.5036032151054 66.463 0.59 66.463 66.135 66.725 0 62 26 3 0 0 0 0.0048787 3 37027 36931;37027;37128 117.6 60.127 1 5419900 72300 3963 48318 49369 84133;84134;84135 84134 0.015029628033403242 VPSSDPIVF 9 Unmodified _VPSSDPIVF_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.7557067871094 2 480.755475 959.496398 0.42914 0.00020631 -0.091584 -4.403E-05 0.33756 0.00016228 480.75543030951906 66.464 0.59442 66.464 66.153 66.747 0 67 26 3 0 0 0 0.023164 3 37070 36961;37070;37178 60.39 20.432 1 8171100 72301 3963 48318 49369 84136;84137;84138 84137 0.015029628033403242 VPSSDPIVF 9 Unmodified _VPSSDPIVF_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 960.5045166015625 1 960.503674 959.496398 0.20219 0.0001942 0.48531 0.00046614 0.6875 0.00066034 960.5044686116693 66.926 0.33449 66.443 66.235 66.569 -0.48323 24 15 2 0 0 0 0.042911 2 36516 36516;36622 48.346 29.089 1 733340 72302 3963 48318 49369 84139;84140 84139 0.015029628033403242 VPSSDPIVF 9 Unmodified _VPSSDPIVF_ 0 0 0 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 ENSG00000126749|ENST00000599672|EMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7557373046875 2 480.755475 959.496398 0.41503 0.00019953 0.0164 7.8842E-06 0.43143 0.00020741 480.7556193045431 66.92 0.31679 66.436 66.273 66.59 -0.48324 24 14 3 0 0 0 0.30562 1 36543 36543 16.942 1.0951 1 906710 72303 3963 48318 49369 84141 84141 0.015029628033403242 VPSSELQIY 9 Unmodified _VPSSELQIY_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000485646.1_1_13:21714754-21715135:+|nuORF nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2708129882812 2 518.27149 1034.52843 0.97539 0.00050552 -0.74089 -0.00038398 0.2345 0.00012154 518.2711319118963 54.67 0.47717 54.67 54.398 54.876 0 53 20 4 0 0 0 0.016184 2 30404 30298;30404 67.344 16.753 1 10325000 72304 6057 48319 49370 84142;84143 84143 0.012543304864948368 VPSSELQIY 9 Unmodified _VPSSELQIY_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000485646.1_1_13:21714754-21715135:+|nuORF nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2706909179688 2 518.27149 1034.52843 0.26964 0.00013975 0.049228 2.5514E-05 0.31887 0.00016526 518.2714083631777 55.258 0.43879 54.78 54.588 55.026 -0.47798 34 20 2 0 0 0 0.16226 1 29944 29944 26.884 5.137 1 1427400 72305 6057 48319 49370 84144 84144 0.012543304864948368 VPSSELQIY 9 Unmodified _VPSSELQIY_ 0 0 0 nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18;ENST00000485646.1_1_13:21714754-21715135:+|nuORF nc|ENSG00000150459|O00422|SAP18 nc|ENSG00000150459|O00422|SAP18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7742919921875 2 518.27149 1034.52843 1.6635 0.00086213 -0.89547 -0.0004641 0.768 0.00039803 518.2692158532567 62.45 0.57979 56.274 56.073 56.653 -6.1757 57 30 3 0 0 0 0.06187 1 40270 40270 42.095 13.608 1 39219000 72306 6057 48319 49370 84145 84145 0.012543304864948368 VPSSFHIPM 9 Unmodified _VPSSFHIPM_ 0 0 0 REV__KRT7|p.S2P|1|0.18|ENSG00000135480|chr12:52233300-52233300|T/C|missense_variant REV__KRT7|p.S2P|1|0.18|ENSG00000135480|chr12:52233300-52233300|T/C|missense_variant MSMS AL20221201_MKP_PDAC_01 4 507.7600708007812 2 507.757495 1013.50044 NaN NaN NaN NaN NaN NaN NaN 64.913 1 58.737 58.237 59.237 -6.1757 0 0 0 0.13852 1 42096 42096 38.151 7.9264 1 + 72307 29399 48320 49371 84146 84146 -0.0057727097459974175 VPSSGASDVF 10 Unmodified _VPSSGASDVF_ 0 0 0 REV__ENSG00000134954|ENST00000392668|ETS1 REV__ENSG00000134954|ENST00000392668|ETS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2509460449219 2 483.232364 964.450176 0.50722 0.00024511 -0.44216 -0.00021367 0.065057 3.1438E-05 483.23214660143043 53.074 0.26207 53.074 52.982 53.244 0 17 11 2 0 0 0 0.22149 1 29472 29472 20.454 7.9221 1 832880 + 72308 20027 48321 49372 84147 84147 -0.03347102098746291 VPSSRLLVY 9 Unmodified _VPSSRLLVY_ 0 0 0 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 ENSG00000106804|ENST00000223642|C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3067626953125 2 517.305667 1032.59678 0.99972 0.00051716 -3.8235 -0.0019779 -2.8238 -0.0014608 517.8043374381223 50.588 0.34185 50.534 50.347 50.688 -0.053875 36 15 3 0 0 0 0.20428 1 27343 27343 22.736 0 1 3107700 72309 2461 48322 49373 84148 84148 0.08178619856994374 VPSSSPYGF 9 Unmodified _VPSSSPYGF_ 0 0 0 REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.9385070800781 2 470.724175 939.433798 -0.66442 -0.00031276 0.02275 1.0709E-05 -0.64167 -0.00030205 470.72420743173643 77.562 0.28848 77.08 76.956 77.244 -0.4826 24 13 2 0 0 0 0.203 1 42553 42553 9.3474 0 1 1532600 + 72310 26768 48323 49374 84149 84149 -0.03834183264848434 VPSSSTGLGGF 11 Unmodified _VPSSSTGLGGF_ 0 0 0 REV__ENSG00000124766|ENST00000244745|SOX4 REV__ENSG00000124766|ENST00000244745|SOX4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.2812805175781 2 504.753464 1007.49238 0.36985 0.00018668 4.3629 0.0022022 4.7327 0.0023889 504.75529369311363 99.715 0.1401 93.539 93.46 93.6 -6.1757 11 8 2 0 0 0 0.28752 1 66419 66419 13.906 11.846 1 18479000 + 72311 19468 48324 49375 84150 84150 -0.011071266903627475 VPSTEPGFDS 10 Unmodified _VPSTEPGFDS_ 0 0 0 REV__ENSG00000115183|ENST00000263635|TANC1 REV__ENSG00000115183|ENST00000263635|TANC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2354125976562 2 518.235104 1034.45566 -0.11924 -6.1792E-05 0.036362 1.8844E-05 -0.082874 -4.2948E-05 518.2351218120006 21.999 0.34879 21.999 21.774 22.123 0 81 41 2 0 0 0 0.33553 1 11161 11161 25.399 9.5521 1 2480800 + 72312 18956 48325 49376 84151 84151 -0.06019423306929639 VPSVHQSKQAL 11 Unmodified _VPSVHQSKQAL_ 0 0 0 REV__ENST00000336665.9_1_2:237032783-237033149:+|nuORF REV__ENST00000336665.9_1_2:237032783-237033149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3323974609375 2 597.335487 1192.65642 1.2219 0.00072987 3.4303 0.002049 4.6521 0.0027789 597.3374619059397 92.107 0.47543 92.137 91.966 92.441 0.030197 33 17 2 0 0 0 0.66568 1 51361 51361 13.906 0.86358 1 5538500 + 72313 25648 48326 49377 84152 84152 0.06779890800385147 VPSVPASPP 9 Unmodified _VPSVPASPP_ 0 0 0 ENST00000492190.5_1_5:126112854-126113319:+|nuORF;ENST00000460265.5_1_5:126112743-126113319:+|nuORF ENST00000492190.5_1_5:126112854-126113319:+|nuORF ENST00000492190.5_1_5:126112854-126113319:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 850.4674682617188 1 850.466895 849.459619 0.20266 0.00017236 0.035229 2.9961E-05 0.23789 0.00020232 850.4674731072494 57.997 0.33736 57.997 57.869 58.206 0 23 13 2 0 0 0 0.16226 1 32220 32220 26.884 3.7352 1 1085600 72314 13637 48327 49378 84153 84153 0.028867109774296296 VPSVPSPE 8 Unmodified _VPSVPSPE_ 0 0 0 REV__ENST00000390289.2_1_22:22673091-22673434:+|nuORF REV__ENST00000390289.2_1_22:22673091-22673434:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 406.5481567382812 2 406.213443 810.412334 0.61645 0.00025041 2.4037 0.00097642 3.0202 0.0012268 406.21436568392113 28.129 0.21524 24.981 24.843 25.059 -3.1482 19 11 2 0 0 0 8.7369 1 15607 15607 40.449 2.2974 1 5209500 + 72315 26366 48328 49379 84154 84154 -0.0004556829355806258 VPSVSTATL 9 Unmodified _VPSVSTATL_ 0 0 0 REV__ENST00000608290.1_1_22:46409584-46410459:+|nuORF REV__ENST00000608290.1_1_22:46409584-46410459:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 437.5230712890625 2 437.74765 873.480748 NaN NaN NaN NaN NaN NaN NaN 29.746 1 26.444 25.944 26.944 -3.3016 0 0 0 0.15618 1 16748 16748 36.044 5.8194 1 + 72316 29325 48329 49380 84155 84155 0.03894676286302001 VPSVVPLGG 9 Unmodified _VPSVVPLGG_ 0 0 0 ENST00000561234.5_2_15:40758405-40758639:+|nuORF ENST00000561234.5_2_15:40758405-40758639:+|nuORF ENST00000561234.5_2_15:40758405-40758639:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.7484436035156 2 412.747453 823.480354 NaN NaN NaN NaN NaN NaN NaN 55.869 1 55.8 55.3 56.3 -0.068737 0 0 0 0.8622 1 30371 30371 0 0 1 72317 15319 48330 49381 84156 84156 0.0615530135711424 VPSWPWPPAL 10 Unmodified _VPSWPWPPAL_ 0 0 0 REV__ENSG00000115649|ENST00000360507|CNPPD1 REV__ENSG00000115649|ENST00000360507|CNPPD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3085327148438 2 575.30821 1148.60187 1.1149 0.0006414 1.2795 0.00073612 2.3944 0.0013775 575.3105286296735 87.153 0.89198 80.977 80.434 81.326 -6.1757 133 48 4 0 0 0 0.55245 1 57378 57378 10.824 0 1 57575000 + 72318 19000 48331 49382 84157 84157 0.03350923719608545 VPSWTWWPFP 10 Unmodified _VPSWTWWPFP_ 0 0 0 ENST00000273814.7_1_4:953005-953860:-|nuORF ENST00000273814.7_1_4:953005-953860:-|nuORF ENST00000273814.7_1_4:953005-953860:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8825988769531 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 52.164 1 52.164 51.664 52.664 0 0 0 0 0.98914 1 28858 28858 0.77653 0.27058 1 72319 11381 48332 49383 84158 84158 -0.015416912516911907 VPSYFIYQL 9 Unmodified _VPSYFIYQL_ 0 0 0 REV__ENST00000560750.1_1_15:44827607-44828268:-|nuORF REV__ENST00000560750.1_1_15:44827607-44828268:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2591552734375 2 565.30005 1128.58555 0.055984 3.1648E-05 1.2038 0.00068051 1.2598 0.00071216 565.300620046908 69.671 0.52295 69.192 68.925 69.448 -0.47903 72 22 4 0 0 0 0.53666 1 38172 38172 5.2307 0 1 7768700 + 72320 28829 48333 49384 84159 84159 0.026397977628448643 VPTAAGHRLR 10 Unmodified _VPTAAGHRLR_ 0 0 0 ENST00000259351.9_1_9:129677065-129724587:+|nuORF ENST00000259351.9_1_9:129677065-129724587:+|nuORF ENST00000259351.9_1_9:129677065-129724587:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3193359375 2 539.317432 1076.62031 0.81688 0.00044056 1.1817 0.00063733 1.9986 0.0010779 539.3189387860447 70.376 0.39941 64.2 64.027 64.427 -6.1757 27 21 2 0 0 0 0.42068 1 45967 45967 20.454 0 1 35364000 72321 11214 48334 49385 84160 84160 0.08506478414165031 VPTALPLL 8 Unmodified _VPTALPLL_ 0 0 0 nc|ENSG00000168394|Q03518-2|TAP1;ENSG00000168394|ENST00000354258|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 nc|ENSG00000168394|Q03518-2|TAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 823.5304565429688 1 823.528767 822.521491 0.042239 3.4785E-05 1.1719 0.0009651 1.2141 0.00099988 823.529670273761 86.9 0.34158 86.396 86.267 86.609 -0.50318 21 13 2 0 0 0 0.41521 1 47538 47538 42.968 0 1 490980 72322 7756 48335 49386 84161 84161 0.10313062396585337 VPTARAGPAP 10 Unmodified _VPTARAGPAP_ 0 0 0 REV__ENST00000471850.1_1_3:119298548-119305161:+|nuORF REV__ENST00000471850.1_1_3:119298548-119305161:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 468.7671203613281 2 468.766709 935.518865 NaN NaN NaN NaN NaN NaN NaN 41.365 1 36.757 36.257 37.257 -4.6079 0 0 0 0.30988 1 24830 24830 36.506 2.3189 1 + 72323 25836 48336 49387 84162 84162 0.048526069916078995 VPTASLLGG 9 Unmodified _VPTASLLGG_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.7383728027344 2 407.737086 813.459619 0.26118 0.00010649 2.3606 0.0009625 2.6218 0.001069 407.7383602488251 59.71 0.28568 59.71 59.51 59.796 0 16 12 2 0 0 0 0.62242 1 33299 33299 0 0 1 922920 72324 8170 48337 49388 84163 84163 0.045427109774550445 VPTASLLGG 9 Unmodified _VPTASLLGG_ 0 0 0 ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C ENSG00000171988|ENST00000399262|JMJD1C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 407.737086 813.459619 0.048577 1.9806E-05 3.4093 0.0013901 3.4578 0.0014099 407.7385536964004 59.634 0.25477 59.581 59.479 59.734 -0.053059 -0.064162 0.00039785 NaN 0 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2362600 72325 8170 48337 49388 0.045427109774550445 VPTCLPELE 9 Unmodified _VPTCLPELE_ 0 0 0 REV__nc|ENSG00000170345|P01100-2|FOS REV__nc|ENSG00000170345|P01100-2|FOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7547302246094 2 500.754618 999.494683 0.27788 0.00013915 -0.062133 -3.1113E-05 0.21574 0.00010803 500.75482717453434 83.301 0.19547 82.803 82.719 82.914 -0.49751 10 7 2 0 0 0 0.58865 1 45610 45610 2.0598 0 1 328840 + 72326 22474 48338 49389 84164 84164 -0.0050841427693057994 VPTDEARAF 9 Unmodified _VPTDEARAF_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2527770996094 2 503.253631 1004.49271 -0.15447 -7.774E-05 -0.28981 -0.00014585 -0.44428 -0.00022359 503.25343366614425 31.91 0.38691 31.91 31.739 32.126 0 33 18 2 0 0 0 0.044011 2 16599 16599;16712 47.749 29.602 1 25406000 72327 2161 48339 49390 84165;84166 84165 -0.009357069705288268 VPTDEARAF 9 Unmodified _VPTDEARAF_ 0 0 0 ENSG00000103769|ENST00000261890|RAB11A;nc|ENSG00000103769|P62491-2|RAB11A;nc|ENSG00000185236|Q15907-2|RAB11B;ENSG00000185236|ENST00000328024|RAB11B ENSG00000103769|ENST00000261890|RAB11A ENSG00000103769|ENST00000261890|RAB11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.75439453125 2 503.253631 1004.49271 0.55844 0.00028104 -0.5154 -0.00025938 0.043046 2.1663E-05 503.2533275492164 36.502 0.44512 32.273 32.064 32.51 -4.2288 50 27 3 0 0 0 0.028475 3 21283 21227;21283;21403 56.177 36.738 1 38654000 72328 2161 48339 49390 84167;84168;84169 84168 -0.009357069705288268 VPTDEITVY 9 Unmodified _VPTDEITVY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1;ENST00000474340.1_1_9:95003027-95004705:-|nuORF ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7672729492188 2 518.763497 1035.51244 0.31467 0.00016324 0.58802 0.00030504 0.90269 0.00046828 518.7638730672143 52.554 0.39655 52.554 52.402 52.798 0 54 17 4 0 0 0 0.06187 2 29046 29046;29159 42.095 14.298 1 25029000 72329 9795 48340 49391 84170;84171 84170 -0.003893757504329187 VPTDEITVY 9 Unmodified _VPTDEITVY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1;ENST00000474340.1_1_9:95003027-95004705:-|nuORF ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.763671875 2 518.763497 1035.51244 1.2032 0.00062418 -0.72045 -0.00037374 0.48275 0.00025043 518.7632936403492 60.845 0.4054 54.698 54.478 54.884 -6.1478 45 21 3 0 0 0 0.087258 1 39113 39113 36.044 9.1605 1 49525000 72330 9795 48340 49391 84172 84172 -0.003893757504329187 VPTDGRLTL 9 Unmodified _VPTDGRLTL_ 0 0 0 REV__ENSG00000185670|ENST00000394807|ZBTB3 REV__ENSG00000185670|ENST00000394807|ZBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2784118652344 2 486.279649 970.544745 -0.29036 -0.0001412 -3.6052 -0.0017532 -3.8956 -0.0018944 486.27823678898983 40.959 0.2337 40.959 40.903 41.137 0 20 15 2 0 0 0 0.085319 1 22058 22058 36.506 5.2379 1 4855600 + 72331 23519 48341 49392 84173 84173 0.05829456443234449 VPTDGSHWL 9 Unmodified _VPTDGSHWL_ 0 0 0 nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5 nc|ENSG00000288705|P35504-2|UGT1A5 nc|ENSG00000288705|P35504-2|UGT1A5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7924499511719 2 506.248349 1010.48214 0.94987 0.00048087 -2.1912 -0.0011093 -1.2413 -0.00062842 506.24667641552054 46.399 0.25037 46.399 46.294 46.544 0 17 11 3 0 0 0 0.19613 1 25383 25383 12.532 2.3482 1 2587800 72332 16629 48342 49393 84174 84174 -0.022676896249663514 VPTDVLYYQ 9 Unmodified _VPTDVLYYQ_ 0 0 0 REV__ENSG00000248713|ENST00000511828|C4orf54 REV__ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2799072265625 2 549.279315 1096.54408 0.72453 0.00039797 2.2714 0.0012476 2.9959 0.0016456 549.2798768320881 75.375 0.45734 74.898 74.605 75.062 -0.47714 48 24 3 0 0 0 0.16226 1 41261 41261 26.884 7.6267 1 2170200 + 72333 24490 48343 49394 84175 84175 -0.0003338299648021348 VPTDVLYYQ 9 Unmodified _VPTDVLYYQ_ 0 0 0 REV__ENSG00000248713|ENST00000511828|C4orf54 REV__ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2796020507812 2 549.279315 1096.54408 0.34914 0.00019178 0.002499 1.3726E-06 0.35164 0.00019315 549.2793129281428 78.329 0.76624 78.382 78.011 78.777 0.052444 90 31 4 0 0 0 0.2143 1 43339 43339 21.747 2.4897 1 14373000 + 72334 24490 48343 49394 84176 84176 -0.0003338299648021348 VPTELALLY 9 Unmodified _VPTELALLY_ 0 0 0 nc|ENSG00000139291|Q96HH6-2|TMEM19;ENSG00000139291|ENST00000266673|TMEM19 nc|ENSG00000139291|Q96HH6-2|TMEM19 nc|ENSG00000139291|Q96HH6-2|TMEM19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7951354980469 2 509.794601 1017.57465 0.055123 2.8101E-05 -0.092416 -4.7113E-05 -0.037293 -1.9012E-05 509.7946867274466 93.058 0.75964 86.882 86.5 87.26 -6.1757 98 53 3 0 0 0 0.03327 1 61393 61393 53.576 13.618 1 32557000 72335 5144 48344 49395 84177 84177 0.06656395388574765 VPTEQARAY 9 Unmodified _VPTEQARAY_ 0 0 0 ENSG00000197562|ENST00000248139|RAB40C;nc|ENSG00000197562|Q96S21-2|RAB40C;ENST00000561781.1_1_16:675886-677619:+|nuORF ENSG00000197562|ENST00000248139|RAB40C ENSG00000197562|ENST00000248139|RAB40C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.766357421875 2 517.766906 1033.51926 -0.17668 -9.1478E-05 -0.57502 -0.00029772 -0.75169 -0.0003892 517.7666222200999 20.895 0.16165 20.895 20.811 20.972 0 55 32 2 0 0 0 0.21643 1 10511 10511 21.537 12.154 1 1992300 72336 9969 48345 49396 84178 84178 0.0038398192079966975 VPTEVIPKG 9 Unmodified _VPTEVIPKG_ 0 0 0 REV__ENSG00000121297|ENST00000240587|TSHZ3 REV__ENSG00000121297|ENST00000240587|TSHZ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2802429199219 2 470.279118 938.543683 0.27644 0.00013 -0.16262 -7.6479E-05 0.11381 5.3524E-05 470.27855605098614 69.995 0.69901 69.995 69.797 70.496 0 147 64 3 0 0 0 0.12841 1 39146 39146 30.225 3.3412 1 83078000 + 72337 19286 48346 49397 84179 84179 0.07195242074340058 VPTFDWFF 8 Unmodified _VPTFDWFF_ 0 0 0 ENST00000398922.6_1_11:62433857-62434520:+|nuORF;ENSG00000214756|ENST00000532971|CSKMT ENST00000398922.6_1_11:62433857-62434520:+|nuORF ENST00000398922.6_1_11:62433857-62434520:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7545166015625 2 529.752736 1057.49092 0.33915 0.00017967 3.0239 0.0016019 3.363 0.0017816 529.754721812589 52.578 0.27567 52.578 52.402 52.678 0 23 12 3 0 0 0 0.35156 1 29129 29129 49.669 24.995 1 3615000 72338 10508 48347 49398 84180 84180 -0.035527159884850334 VPTGCRTSL 9 Carbamidomethyl (C) _VPTGC(Carbamidomethyl (C))RTSL_ VPTGC(1)RTSL VPTGC(46)RTSL 0 1 0 ENST00000534398.1_1_8:144824160-144824280:+|nuORF ENST00000534398.1_1_8:144824160-144824280:+|nuORF ENST00000534398.1_1_8:144824160-144824280:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7557678222656 2 495.755484 989.496415 -0.20839 -0.00010331 -0.90604 -0.00044917 -1.1144 -0.00055249 495.75590012976437 23.864 0.47951 23.864 23.659 24.138 0 62 23 4 0 0 0 0.047788 1 12200 12200 45.7 13.394 1 3267700 72339 14954 48348 49399 84181 84181 990 0.0012463953170254172 VPTGCRTSL 9 Carbamidomethyl (C) _VPTGC(Carbamidomethyl (C))RTSL_ VPTGC(1)RTSL VPTGC(60)RTSL 0 1 0 ENST00000534398.1_1_8:144824160-144824280:+|nuORF ENST00000534398.1_1_8:144824160-144824280:+|nuORF ENST00000534398.1_1_8:144824160-144824280:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7557983398438 2 495.755484 989.496415 0.55805 0.00027666 -0.72649 -0.00036016 -0.16844 -8.3505E-05 495.75539421836004 27.086 0.82331 24.049 23.717 24.541 -3.0365 105 41 4 0 0 0 0.023481 2 14998 14883;14998 60.074 14.053 1 268060000 72340 14954 48348 49399 84182;84183 84183 990 0.0012463953170254172 VPTGHATSL 9 Unmodified _VPTGHATSL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7377624511719 2 441.737617 881.460681 -0.094171 -4.1599E-05 0.80039 0.00035356 0.70622 0.00031196 441.73797072037837 23.258 0.31997 23.258 23.087 23.407 0 30 15 3 0 0 0 0.14602 1 11839 11839 28.487 5.3384 1 1163700 72341 5669 48349 49400 84184 84184 0.015209253463240202 VPTGHATSL 9 Unmodified _VPTGHATSL_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MSMS AL20221201_MKP_PDAC_01 4 441.7381896972656 2 441.737617 881.460681 NaN NaN NaN NaN NaN NaN NaN 26.45 1 23.499 22.999 23.999 -2.9511 0 0 0 0.020219 1 14578 14578 78.149 33.742 1 72342 5669 48349 49400 84185 84185 0.015209253463240202 VPTGLLAGI 9 Unmodified _VPTGLLAGI_ 0 0 0 REV__ENSG00000113845|ENST00000494664|TIMMDC1 REV__ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 840.5201416015625 1 840.518931 839.511654 -0.50677 -0.00042595 1.8596 0.001563 1.3528 0.0011371 840.5204211768034 61.524 0.30072 61.035 60.88 61.18 -0.48932 22 13 2 0 0 0 0.03327 1 33480 33480 53.576 0 1 2019700 + 72343 18893 48350 49401 84186 84186 0.08547874391183541 VPTGLLAGI 9 Unmodified _VPTGLLAGI_ 0 0 0 REV__ENSG00000113845|ENST00000494664|TIMMDC1 REV__ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 840.518931 839.511654 0.18588 0.00015624 1.4456 0.0012151 1.6315 0.0013713 840.5202936703971 61.057 0.24138 61.057 60.929 61.171 0 0.01084 -0.00024477 NaN 53.576 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 537020 + 72344 18893 48350 49401 0.08547874391183541 VPTGLLAGI 9 Unmodified _VPTGLLAGI_ 0 0 0 REV__ENSG00000113845|ENST00000494664|TIMMDC1 REV__ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 840.518931 839.511654 -0.50677 -0.00042595 1.8596 0.001563 1.3528 0.0011371 840.5204211768034 61.524 0.30072 61.035 60.88 61.18 -0.48932 -0.01084 0.00010321 NaN 53.576 22 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2019700 + 72345 18893 48350 49401 0.08547874391183541 VPTGNGPVRH 10 Unmodified _VPTGNGPVRH_ 0 0 0 ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 ENSG00000135540|ENST00000343505|NHSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2809448242188 2 517.280515 1032.54648 0.30052 0.00015545 0.92761 0.00047983 1.2281 0.00063529 517.2808376373849 76.985 0.76303 76.985 76.637 77.4 0 185 42 5 0 0 0 0.35903 1 42749 42749 24.021 3.5669 1 877920000 72346 4719 48351 49402 84187 84187 0.03150510251862215 VPTKEMEGKIE 11 Unmodified _VPTKEMEGKIE_ 0 0 0 REV__nc|ENSG00000130413|Q9BYT3-2|STK33 REV__nc|ENSG00000130413|Q9BYT3-2|STK33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.828369140625 2 630.828846 1259.64314 -0.33114 -0.00020889 0.28682 0.00018093 -0.044315 -2.7955E-05 630.828967801492 32.212 0.2084 32.083 31.94 32.149 -0.12915 11 7 2 0 0 0 0.71618 1 16783 16783 2.7352 0 1 1369500 + 72347 19720 48352 49403 84188 84188 0.02370271906124799 VPTKHLFEL 9 Unmodified _VPTKHLFEL_ 0 0 0 REV__ENSG00000189091|ENST00000302516|SF3B3 REV__ENSG00000189091|ENST00000302516|SF3B3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.1857604980469 3 361.878087 1082.61243 0.0039591 1.4327E-06 1.2544 0.00045396 1.2584 0.00045539 361.8784224129794 38.147 0.21606 37.875 37.802 38.018 -0.27133 14 9 2 0 0 0 0.20883 1 20068 20068 8.1555 3.6267 1 1068200 + 72348 23761 48353 49404 84189 84189 0.07442906374035374 VPTKQMKFA 9 Unmodified _VPTKQMKFA_ 0 0 0 ENSG00000100227|ENST00000252115|POLDIP3;nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENST00000491021.1_1_22:42993722-42998991:-|nuORF ENSG00000100227|ENST00000252115|POLDIP3 ENSG00000100227|ENST00000252115|POLDIP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.5325317382812 3 350.531922 1048.57394 NaN NaN NaN NaN NaN NaN NaN 21.207 1 21.207 20.707 21.707 0 0 0 0 0.82396 1 10715 10715 2.7352 0.89096 1 72349 1774 48354 49405 84190 84190 0.05159277467873835 VPTKWLCL 8 Unmodified _VPTKWLCL_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-3|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.7745971679688 2 480.272781 958.531009 0.64602 0.00031026 0.22263 0.00010692 0.86864 0.00041719 480.2733300156385 71.733 0.84266 71.257 70.817 71.66 -0.47609 100 34 4 0 0 0 0.71616 1 39444 39444 15.768 4.6538 1 3384700 72350 1885 48355 49406 84191 84191 0.05008507410423135 VPTLEVPAPE 10 Unmodified _VPTLEVPAPE_ 0 0 0 ENSG00000186854|ENST00000409520|TRABD2A;nc|ENSG00000186854|Q86V40-2|TRABD2A ENSG00000186854|ENST00000409520|TRABD2A ENSG00000186854|ENST00000409520|TRABD2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.28662109375 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 80.069 1 80.069 79.569 80.569 0 0 0 0 0.24983 1 44464 44464 39.957 7.6518 1 72351 9512 48356 49407 84192 84192 0.03646903520575506 VPTLHLFNPIK 11 Unmodified _VPTLHLFNPIK_ 0 0 0 REV__ENSG00000061794|ENST00000081029|MRPS35 REV__ENSG00000061794|ENST00000081029|MRPS35 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 426.7453002929688 3 426.923807 1277.74959 0.74307 0.00031723 0.63034 0.00026911 1.3734 0.00058634 426.923730402574 85.775 0.65636 79.599 79.153 79.81 -6.1757 100 38 3 0 0 0 0.30073 1 56374 56374 7.4771 0 1 48682000 + 72352 17334 48357 49408 84193 84193 0.12182815253595436 VPTLTAPLPA 10 Unmodified _VPTLTAPLPA_ 0 0 0 REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2966918945312 2 490.294768 978.574983 0.55062 0.00026997 1.056 0.00051773 1.6066 0.0007877 490.2955770105741 95.146 0.24542 94.778 94.634 94.88 -0.36814 17 12 2 0 0 0 0.50944 1 51952 51952 15.847 1.0089 1 388730 + 72353 19112 48358 49409 84194 84194 0.08483815108399995 VPTLTPPS 8 Unmodified _VPTLTPPS_ 0 0 0 ENSG00000130487|ENST00000648057|KLHDC7B ENSG00000130487|ENST00000648057|KLHDC7B;REV__ENSG00000171988|ENST00000399262|JMJD1C ENSG00000130487|ENST00000648057|KLHDC7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.4550170898438 1 811.455996 810.448719 0.048756 3.9564E-05 -0.1618 -0.0001313 -0.11305 -9.1732E-05 811.4557376474096 56.773 0.3119 56.773 56.635 56.947 0 22 13 2 0 0 0 0.37649 1 31651 31651 46.921 0 1 2899500 72354 4216;22618 48359 49410 84195 84195 0.03591308603131438 VPTNKHFI 8 Unmodified _VPTNKHFI_ 0 0 0 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 ENSG00000198707|ENST00000552810|CEP290 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 955.3855590820312 1 955.535978 954.528701 0.48364 0.00046214 -0.16915 -0.00016163 0.31449 0.00030051 955.5337016285226 23.878 0.24746 23.899 23.762 24.009 0.021185 13 10 2 0 0 0 8.7369 1 12246 12246 0.79363 0 1 1765200 72355 10127 48360 49411 84196 84196 0.04961794996984281 VPTPGGYV 8 Unmodified _VPTPGGYV_ 0 0 0 ENST00000429967.2_1_X:128781414-128781876:-|nuORF ENST00000429967.2_1_X:128781414-128781876:-|nuORF ENST00000429967.2_1_X:128781414-128781876:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2098388671875 2 395.210704 788.406855 NaN NaN NaN NaN NaN NaN NaN 18.721 1 18.721 18.221 19.221 0 0 0 0 0.97444 1 9327 9327 2.8892 0.58649 1 72356 13229 48361 49412 84197 84197 0.0041875291461792585 VPTPIHPIF 9 Unmodified _VPTPIHPIF_ 0 0 0 ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121 ENSG00000196313|ENST00000434423|POM121 ENSG00000196313|ENST00000434423|POM121 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7984008789062 2 510.797478 1019.5804 0.87748 0.00044821 1.0079 0.00051483 1.8854 0.00096304 510.79808985700396 64.896 0.42016 64.896 64.636 65.056 7.6294E-06 36 20 3 0 0 0 0.012158 1 35565 35565 74.396 17.855 1 4270100 72357 9796 48362 49413 84198 84198 0.07139538690898917 VPTPPLLLC 9 Unmodified _VPTPPLLLC_ 0 0 0 REV__ENSG00000120800|ENST00000261637|UTP20 REV__ENSG00000120800|ENST00000261637|UTP20 MSMS AL20221201_MKP_PDAC_01 4 476.7792358398438 2 476.780439 951.546325 NaN NaN NaN NaN NaN NaN NaN 90.413 1 84.237 83.737 84.737 -6.1757 0 0 0 0.33856 1 59721 59721 23.148 6.2061 1 + 72358 19262 48363 49414 84199 84199 0.06861374207642257 VPTPVSTTL 9 Unmodified _VPTPVSTTL_ 0 0 0 REV__ENSG00000106780|ENST00000373930|MEGF9 REV__ENSG00000106780|ENST00000373930|MEGF9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7638854980469 2 457.7633 913.512048 NaN NaN NaN NaN NaN NaN NaN 77.755 1 77.273 76.773 77.773 -0.4826 0 0 0 0.6032 1 42570 42570 12.532 0 1 + 72359 18535 48364 49415 84200 84200 0.05183249320384675 VPTPWDWRQW 10 Unmodified _VPTPWDWRQW_ 0 0 0 ENST00000446942.5_1_22:24981856-24984799:-|nuORF ENST00000446942.5_1_22:24981856-24984799:-|nuORF ENST00000446942.5_1_22:24981856-24984799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 686.3358764648438 2 685.835654 1369.65676 0.26061 0.00017874 -2.7558 -0.0018901 -2.4952 -0.0017113 686.3359371545729 31.174 0.17675 31.071 30.959 31.136 -0.10269 13 6 3 0 0 0 0.52888 1 16193 16193 14.838 4.0388 1 1293200 72360 13473 48365 49416 84201 84201 -0.013286894798056892 VPTQLVSYF 9 Unmodified _VPTQLVSYF_ 0 0 0 ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1 ENST00000473373.1_1_20:34214165-34214426:-|nuORF ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2824096679688 2 527.2844 1052.55425 0.34823 0.00018362 0.28191 0.00014865 0.63014 0.00033227 527.2845315987113 79.071 0.36022 78.585 78.416 78.776 -0.48596 38 15 3 0 0 0 0.015445 2 43274 43274;43374 68.081 37.444 1 8077000 72361 10479 48366 49417 84202;84203 84202 0.030072247287534992 VPTQLVSYF 9 Unmodified _VPTQLVSYF_ 0 0 0 ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1 ENST00000473373.1_1_20:34214165-34214426:-|nuORF ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.28466796875 2 527.2844 1052.55425 0.34556 0.00018221 0.9336 0.00049227 1.2792 0.00067448 527.2847609878442 78.543 0.38309 78.595 78.394 78.777 0.052452 41 15 3 0 0 0 0.094149 1 43326 43326 34.402 7.5181 1 14593000 72362 10479 48366 49417 84204 84204 0.030072247287534992 VPTQLVSYF 9 Unmodified _VPTQLVSYF_ 0 0 0 ENST00000473373.1_1_20:34214165-34214426:-|nuORF;ENST00000401607.6_1_20:34214165-34218368:-|nuORF;ENST00000483495.5_1_20:34214165-34218616:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1 ENST00000473373.1_1_20:34214165-34214426:-|nuORF ENST00000473373.1_1_20:34214165-34214426:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.285888671875 2 527.2844 1052.55425 1.1271 0.00059431 -0.85376 -0.00045018 0.27334 0.00014413 527.2838846583959 86.175 1.0699 79.999 79.327 80.397 -6.1757 132 59 3 0 0 0 0.039985 2 56948 56822;56948 49.933 15.673 1 91291000 72363 10479 48366 49417 84205;84206 84206 0.030072247287534992 VPTQQGHLY 9 Unmodified _VPTQQGHLY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7689208984375 2 521.769448 1041.52434 -0.31837 -0.00016611 -0.67739 -0.00035344 -0.99575 -0.00051955 521.7690693168508 27.352 0.37756 27.352 27.174 27.552 0 46 18 3 0 0 0 0.0090524 2 14148 14046;14148 85.642 43.547 1 17158000 72364 2053 48367 49418 84207;84208 84208 0.005242857834218739 VPTQQGHLY 9 Unmodified _VPTQQGHLY_ 0 0 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.770751953125 2 521.769448 1041.52434 1.0952 0.00057142 0.1254 6.5428E-05 1.2206 0.00063685 521.7694116183163 30.888 0.38968 27.391 27.153 27.543 -3.497 35 17 3 0 0 0 0.0044708 2 17391 17391;17510 118.89 72.874 1 65720000 72365 2053 48367 49418 84209;84210 84209 0.005242857834218739 VPTRGSLEL 9 Unmodified _VPTRGSLEL_ 0 0 0 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 ENSG00000177971|ENST00000403490|IMP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2818298339844 2 486.279649 970.544745 0.78606 0.00038224 1.8078 0.00087911 2.5939 0.0012614 486.28048850218516 45.83 0.35295 40.875 40.682 41.035 -4.9549 32 22 2 0 0 0 0.029718 1 28172 28172 55.503 7.1569 1 11800000 72366 8718 48368 49419 84211 84211 0.05829456443234449 VPTRVGQGYVY 11 Unmodified _VPTRVGQGYVY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1;ENST00000564170.1_1_16:75270707-75271278:-|nuORF nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8306274414062 2 619.830037 1237.64552 0.033532 2.0784E-05 -0.055657 -3.4498E-05 -0.022124 -1.3713E-05 619.8300758990699 38.982 0.19968 38.695 38.541 38.741 -0.28687 14 8 2 0 0 0 0.37603 1 20536 20536 22.775 14.03 1 2319100 72367 728 48369 49420 84212 84212 0.03620488426099655 VPTRVGQGYVY 11 Unmodified _VPTRVGQGYVY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1;ENST00000564170.1_1_16:75270707-75271278:-|nuORF nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.33203125 2 619.830037 1237.64552 0.4108 0.00025463 1.229 0.0007618 1.6398 0.0010164 619.8309029858706 43.838 0.29638 39.073 38.857 39.153 -4.7648 32 18 2 0 0 0 0.12206 1 26601 26601 39.923 18.386 1 12676000 72368 728 48369 49420 84213 84213 0.03620488426099655 VPTRVGQGYVY 11 Unmodified _VPTRVGQGYVY_ 0 0 0 nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;ENST00000566982.1_1_16:75263411-75272069:-|nuORF;nc|ENSG00000050820|P56945-4|BCAR1;ENST00000564170.1_1_16:75270707-75271278:-|nuORF nc|ENSG00000050820|P56945-5|BCAR1 nc|ENSG00000050820|P56945-5|BCAR1 MSMS AL20221201_MKP_PDAC_01 4 619.8294067382812 2 619.830037 1237.64552 NaN NaN NaN NaN NaN NaN NaN 43.942 1 39.178 38.678 39.678 -4.7648 0 0 0 0.65561 1 26757 26757 18.721 3.4727 1 72369 728 48369 49420 84214 84214 0.03620488426099655 VPTRVPVAM 9 Unmodified _VPTRVPVAM_ 0 0 0 REV__ENST00000483520.1_1_X:47705703-47720212:+|nuORF REV__ENST00000483520.1_1_X:47705703-47720212:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2814025878906 2 485.281137 968.547722 0.64313 0.0003121 -0.0216 -1.0482E-05 0.62153 0.00030162 485.2810738307367 53.16 0.44278 47.356 47.216 47.659 -5.8042 39 27 2 0 0 0 0.25297 1 33556 33556 19.439 2.4967 1 29484000 + 72370 27742 48370 49421 84215 84215 0.06219008296386619 VPTRYGRIV 9 Unmodified _VPTRYGRIV_ 0 0 0 REV__nc|ENSG00000041982|P24821-4|TNC REV__nc|ENSG00000041982|P24821-4|TNC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.81640625 2 530.816733 1059.61891 0.21608 0.0001147 0.40234 0.00021357 0.61842 0.00032827 530.8168387841038 45.805 0.30479 45.777 45.622 45.926 -0.028015 47 14 4 0 0 0 0.30562 1 24695 24695 16.942 3.8998 1 33188000 + 72371 17200 48371 49422 84216 84216 0.091488443254093 VPTSDTAI 8 Unmodified _VPTSDTAI_ 0 0 0 REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD MSMS AL20221201_MKP_PDAC_01 4 402.2108764648438 2 402.210901 802.407249 NaN NaN NaN NaN NaN NaN NaN 15.868 1 13.311 12.811 13.811 -2.557 0 0 0 0.97444 1 8178 8178 2.8892 0 1 + 72372 17127 48372 49423 84217 84217 -0.001858721562143728 VPTSFLSVP 9 Unmodified _VPTSFLSVP_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.7663269042969 2 473.765843 945.517133 0.57874 0.00027419 -0.13074 -6.194E-05 0.448 0.00021225 473.7657600554378 87.618 0.22466 87.114 86.97 87.195 -0.50423 16 10 2 0 0 0 0.37804 1 47902 47902 13.508 0 1 450910 + 72373 17605 48373 49424 84218 84218 0.04219553182997515 VPTSFLSVP 9 Unmodified _VPTSFLSVP_ 0 0 0 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 REV__nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 473.765843 945.517133 0.57874 0.00027419 -0.13074 -6.194E-05 0.448 0.00021225 473.7657600554378 87.618 0.22466 87.114 86.97 87.195 -0.50423 0 0 NaN 13.508 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 450910 + 72374 17605 48373 49424 0.04219553182997515 VPTSNVLTMLN 11 Unmodified _VPTSNVLTMLN_ 0 0 0 ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000446265.3_1:149648157-149648721:+|nuORF ENSG00000176853|ENST00000334705|FAM91A1 ENSG00000176853|ENST00000334705|FAM91A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.8189697265625 2 594.818281 1187.62201 0.07295 4.3392E-05 0.94922 0.00056461 1.0222 0.00060801 594.8191640716012 97.551 0.24268 97.551 97.441 97.683 0 19 9 3 0 0 0 0.5229 1 53887 53887 15.248 3.7538 1 475260 72375 8625 48374 49425 84219 84219 0.03570306597248418 VPTSTALRPL 10 Unmodified _VPTSTALRPL_ 0 0 0 REV__ENSG00000182606|ENST00000327628|TRAK1 REV__ENSG00000182606|ENST00000327628|TRAK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.760498046875 2 527.816399 1053.61824 0.62177 0.00032818 -2.3843 -0.0012585 -1.7625 -0.0009303 527.8148772493872 59.544 0.24843 59.544 59.4 59.649 0 15 10 2 0 0 0 0.22667 1 33130 33130 10.824 0.75 1 1784100 + 72376 23283 48375 49426 84220 84220 0.09358004885712035 VPTSVKDMRY 10 Unmodified _VPTSVKDMRY_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2095642089844 3 399.209508 1194.60669 0.83854 0.00033475 -0.098189 -3.9198E-05 0.74035 0.00029556 399.2095909492087 35.239 0.42986 31.144 30.869 31.299 -4.0951 62 25 4 0 0 0 0.22237 1 20364 20364 28.181 19.429 1 32514000 72377 1980 48376 49427 84221 84221 0.017174398000634028 VPTTAEEHGF 10 Unmodified _VPTTAEEHGF_ 0 0 0 ENST00000376634.8_1_9:79792556-79814888:+|nuORF ENST00000376634.8_1_9:79792556-79814888:+|nuORF ENST00000376634.8_1_9:79792556-79814888:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2532958984375 2 544.256371 1086.49819 NaN NaN NaN NaN NaN NaN NaN 81.073 1 81.073 80.573 81.573 0 0 0 0 0.90096 1 45005 45005 7.9102 0 1 72378 12504 48377 49428 84222 84222 -0.04160028178716857 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.5296020507812 1 992.529889 991.522613 0.046451 4.6104E-05 -0.72922 -0.00072377 -0.68277 -0.00067767 992.5288023822783 56.819 0.50235 56.819 56.609 57.111 0 52 21 4 0 0 0 0.0088975 1 31637 31637 104.8 44.41 1 13270000 72379 1481 48378 49429 84223 84223 0.02651231974800794 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7686462402344 2 496.768583 991.522613 0.30283 0.00015044 -0.61008 -0.00030307 -0.30726 -0.00015263 496.76819687615745 56.774 0.61298 56.774 56.543 57.156 0 77 26 4 0 0 0 0.06187 1 31638 31638 42.095 5.9675 1 40641000 72380 1481 48378 49429 84224 84224 0.02651231974800794 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 992.5330200195312 1 992.529889 991.522613 0.38096 0.00037811 -0.13611 -0.00013509 0.24485 0.00024302 992.5292371578277 57.415 0.2303 56.925 56.773 57.003 -0.48974 23 10 3 0 0 0 0.0088975 1 31149 31149 104.8 52.531 1 2451500 72381 1481 48378 49429 84225 84225 0.02651231974800794 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7692565917969 2 496.768583 991.522613 0.49762 0.0002472 -0.21194 -0.00010528 0.28568 0.00014192 496.76847113949776 57.374 0.35627 56.884 56.69 57.046 -0.48974 43 16 3 0 0 0 0.06187 1 31150 31150 42.095 0 1 10492000 72382 1481 48378 49429 84226 84226 0.02651231974800794 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7692565917969 2 496.768583 991.522613 1.0296 0.00051149 -0.083519 -4.149E-05 0.94612 0.00047 496.7685837130236 64.855 0.61913 58.679 58.47 59.089 -6.1757 97 34 4 0 0 0 0.023164 2 42090 41962;42090 60.39 22.416 1 138180000 72383 1481 48378 49429 84227;84228 84228 0.02651231974800794 VPTTGIIEY 9 Unmodified _VPTTGIIEY_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 496.768583 991.522613 0.2768 0.00013751 1.3677 0.00067943 1.6445 0.00081694 496.76915130172586 58.921 0.25893 58.921 58.809 59.068 0 0.1209 0.001156 NaN 60.39 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2222000 72384 1481 48378 49429 0.02651231974800794 VPTTVFKEI 9 Unmodified _VPTTVFKEI_ 0 0 0 ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A ENSG00000115548|ENST00000312912|KDM3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2999877929688 2 517.30005 1032.58555 0.31889 0.00016496 0.34565 0.00017881 0.66454 0.00034377 517.3002736739312 94.616 0.21641 94.196 94.111 94.327 -0.42043 22 11 2 0 0 0 0.54444 1 51672 51672 4.756 0.42677 1 649700 72385 3136 48379 49430 84229 84229 0.07055797762859584 VPTVFENY 8 Unmodified _VPTVFENY_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENST00000478447.1_1_1:113246211-113247744:-|nuORF;ENST00000587117.1_1_17:41177364-41178135:+|nuORF;ENSG00000172602|ENST00000309739|RND1;ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2 ENSG00000155366|ENST00000339083|RHOC;ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.739501953125 2 484.739825 967.465098 0.27538 0.00013349 0.72947 0.0003536 1.0048 0.00048709 484.7402483142079 58.679 0.30126 58.679 58.467 58.768 0 20 12 2 0 0 0 0.44122 1 32647 32647 40.449 8.3316 1 1439200 72386 3180;959 48380 49431 84230 84230 -0.019936102307724468 VPTVIAEEM 9 Oxidation (M) _VPTVIAEEM(Oxidation (M))_ VPTVIAEEM(1) VPTVIAEEM(57) 0 0 1 ENSG00000106460|ENST00000396668|TMEM106B;ENST00000420833.5_1_7:12258097-12270062:+|nuORF;ENST00000492762.1_1_7:12269436-12270742:+|nuORF ENSG00000106460|ENST00000396668|TMEM106B ENSG00000106460|ENST00000396668|TMEM106B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7525329589844 2 502.752075 1003.4896 -0.16064 -8.0764E-05 0.23895 0.00012013 0.078308 3.937E-05 502.75236471208285 41.234 0.26036 41.234 41.065 41.325 0 22 12 2 0 0 0 0.026094 1 22208 22208 57.471 37.018 1 2691000 72387 2429 48381 49432 84231 84231 419 -0.012007181395574662 VPTVWLDCTL 10 Unmodified _VPTVWLDCTL_ 0 0 0 ENST00000468090.5_1_21:45179263-45179407:+|nuORF ENST00000468090.5_1_21:45179263-45179407:+|nuORF ENST00000468090.5_1_21:45179263-45179407:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7950439453125 2 573.796817 1145.57908 NaN NaN NaN NaN NaN NaN NaN 62.202 1 61.715 61.215 62.215 -0.48764 0 0 0 0.91523 1 33886 33886 7.2892 0 1 72388 13799 48382 49433 84232 84232 0.012115365398130962 VPTWRMHL 8 Unmodified _VPTWRMHL_ 0 0 0 ENST00000262554.6_1_9:94809905-94809968:-|nuORF ENST00000262554.6_1_9:94809905-94809968:-|nuORF ENST00000262554.6_1_9:94809905-94809968:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.2776489257812 2 520.278929 1038.54331 NaN NaN NaN NaN NaN NaN NaN 103.01 1 96.837 96.337 97.337 -6.1757 0 0 0 0.95201 1 69095 69095 10.183 0.10947 1 72389 11268 48383 49434 84233 84233 0.02557543873490431 VPTWTHGWG 9 Unmodified _VPTWTHGWG_ 0 0 0 REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2278442382812 2 520.751059 1039.48756 0.36951 0.00019242 -1.5119 -0.00078732 -1.1424 -0.00059489 520.7502707305094 62.868 1.5887 62.868 62.29 63.879 0 205 79 4 0 0 0 0.39863 1 35342 35342 12.532 0 1 10209000 + 72390 29130 48384 49435 84234 84234 -0.030599660424968533 VPVAKTAEL 9 Unmodified _VPVAKTAEL_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2792663574219 2 464.279118 926.543683 -0.52713 -0.00024474 0.093346 4.3338E-05 -0.43378 -0.0002014 464.2791362655645 32.238 0.25023 32.238 32.105 32.355 0 30 12 3 0 0 0 0.032796 1 16799 16799 53.833 13.875 1 11910000 72391 3820 48385 49436 84235 84235 0.07747242074333371 VPVAKTAEL 9 Unmodified _VPVAKTAEL_ 0 0 0 nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153 nc|ENSG00000124789|P49790-2|NUP153 nc|ENSG00000124789|P49790-2|NUP153 MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.279541015625 2 464.279118 926.543683 0.84251 0.00039116 -0.34608 -0.00016068 0.49643 0.00023048 464.279159183978 36.785 0.60817 32.501 32.111 32.719 -4.2835 72 37 3 0 0 0 0.015688 2 21444 21444;21568 67.838 23.98 1 41961000 72392 3820 48385 49436 84236;84237 84236 0.07747242074333371 VPVAVPGEELY 11 Unmodified _VPVAVPGEELY_ 0 0 0 REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5445556640625 3 391.544773 1171.61249 0.098523 3.8576E-05 -0.2922 -0.00011441 -0.19368 -7.5833E-05 391.544491583238 39.497 0.21206 39.497 39.341 39.553 0 21 9 3 0 0 0 0.67922 1 21170 21170 5.0475 2.4163 1 3280300 + 72393 26261 48386 49437 84238 84238 0.033548615833979056 VPVAVPGEELY 11 Unmodified _VPVAVPGEELY_ 0 0 0 REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF REV__ENST00000378161.5_1_1:5924088-5924661:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 391.544773 1171.61249 0.098523 3.8576E-05 -0.2922 -0.00011441 -0.19368 -7.5833E-05 391.544491583238 39.497 0.21206 39.497 39.341 39.553 0 0 0 NaN 5.0475 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3280300 + 72394 26261 48386 49437 0.033548615833979056 VPVDLQHQF 9 Unmodified _VPVDLQHQF_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7876586914062 2 541.785099 1081.55564 0.67424 0.0003653 3.1419 0.0017022 3.8161 0.0020675 541.7870733412186 47.582 0.36026 47.582 47.384 47.745 0 29 16 2 0 0 0 0.0082475 1 26011 26011 92.653 56.526 1 11951000 72395 4391 48387 49438 84239 84239 0.018128588175159166 VPVDLQHQF 9 Unmodified _VPVDLQHQF_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7864379882812 2 541.785099 1081.55564 0.40187 0.00021773 -0.12415 -6.7265E-05 0.27772 0.00015046 541.7849876700419 47.838 0.5028 47.485 47.308 47.81 -0.3526 36 24 2 0 0 0 0.0082475 2 25600 25600;25699 92.653 56.526 1 19181000 72396 4391 48387 49438 84240;84241 84240 0.018128588175159166 VPVDLQHQF 9 Unmodified _VPVDLQHQF_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7857055664062 2 541.785099 1081.55564 1.0903 0.00059071 -0.13763 -7.4568E-05 0.95267 0.00051614 541.7849373391673 53.72 0.52181 47.915 47.729 48.251 -5.8042 97 32 4 0 0 0 0.00035873 3 33891 33891;34029;34199 147.06 92.286 1 84361000 72397 4391 48387 49438 84242;84243;84244 84242 0.018128588175159166 VPVDLQHQF 9 Unmodified _VPVDLQHQF_ 0 0 0 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 ENSG00000132326|ENST00000254657|PER2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 541.785099 1081.55564 0.59551 0.00032264 0.47016 0.00025473 1.0657 0.00057737 541.7867181679011 47.546 0.10549 47.508 47.455 47.561 -0.038647 -0.1149 0.00051878 NaN 147.06 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1029300 72398 4391 48387 49438 0.018128588175159166 VPVDVVVNM 9 Oxidation (M) _VPVDVVVNM(Oxidation (M))_ VPVDVVVNM(1) VPVDVVVNM(67) 0 0 1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.2627868652344 2 494.26261 986.510668 0.69751 0.00034475 -0.52065 -0.00025734 0.17686 8.7416E-05 494.26254856527714 46.289 0.63415 46.289 46.044 46.678 0 100 29 5 0 0 0 0.016184 3 25218 25218;25329;25440 67.344 46.89 1 83085000 72399 9978 48388 49439 84245;84246;84247 84245 1612 0.01687291959990489 VPVDVVVNM 9 Oxidation (M) _VPVDVVVNM(Oxidation (M))_ VPVDVVVNM(1) VPVDVVVNM(97) 0 0 1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 987.5208740234375 1 987.517944 986.510668 0.6377 0.00062974 0.18538 0.00018306 0.82307 0.0008128 987.5184333850879 46.326 0.39528 46.326 46.149 46.544 0 26 18 2 0 0 0 0.0083087 1 25241 25241 97.075 71.675 1 2806900 72400 9978 48388 49439 84248 84248 1612 0.01687291959990489 VPVDVVVNM 9 Oxidation (M) _VPVDVVVNM(Oxidation (M))_ VPVDVVVNM(1) VPVDVVVNM(78) 0 0 1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2626647949219 2 494.26261 986.510668 0.78885 0.0003899 -1.7497 -0.00086482 -0.96087 -0.00047492 494.2622423302505 46.8 0.45433 46.463 46.149 46.604 -0.33664 44 22 3 0 0 0 0.010877 2 24919 24919;25026 77.984 57.531 1 9251000 72401 9978 48388 49439 84249;84250 84249 1612 0.01687291959990489 VPVDVVVNM 9 Oxidation (M) _VPVDVVVNM(Oxidation (M))_ VPVDVVVNM(1) VPVDVVVNM(67) 0 0 1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2631225585938 2 494.26261 986.510668 1.2412 0.00061347 -0.56013 -0.00027685 0.68104 0.00033661 494.2625006264085 54.163 0.76722 48.298 47.979 48.746 -5.8653 101 46 3 0 0 0 0.016184 2 34223 34223;34355 67.344 46.89 1 95969000 72402 9978 48388 49439 84251;84252 84251 1612 0.01687291959990489 VPVDVVVNM 9 Unmodified _VPVDVVVNM_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7825317382812 2 486.265153 970.515753 0.23273 0.00011317 -0.48944 -0.000238 -0.25671 -0.00012483 486.264616975551 65.755 0.27273 65.755 65.572 65.845 0 20 12 2 0 0 0 0.17275 1 36673 36673 15.847 9.124 1 1639900 72403 9978 48388 49440 84253 84253 0.0293159582259932 VPVDVVVNM 9 Unmodified _VPVDVVVNM_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2648315429688 2 486.265153 970.515753 0.25946 0.00012617 -1.2795 -0.00062218 -1.02 -0.00049601 486.26442564765114 66.301 0.33649 65.818 65.668 66.005 -0.48323 22 18 2 0 0 0 0.095405 1 36180 36180 34.102 21.571 1 3574300 72404 9978 48388 49440 84254 84254 0.0293159582259932 VPVDVVVNM 9 Unmodified _VPVDVVVNM_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 971.5209350585938 1 971.52303 970.515753 0.56491 0.00054882 0.2361 0.00022938 0.80101 0.0007782 971.5232871803606 73.015 0.43592 66.839 66.6 67.036 -6.1757 39 21 2 0 0 0 0.0082281 2 47760 47647;47760 108 79.51 1 28209000 72405 9978 48388 49440 84255;84256 84256 0.0293159582259932 VPVDVVVNM 9 Unmodified _VPVDVVVNM_ 0 0 0 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 ENSG00000197601|ENST00000354817|FAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.2653503417969 2 486.265153 970.515753 0.85892 0.00041766 -0.30955 -0.00015052 0.54937 0.00026714 486.26488849279133 73.007 0.77705 66.831 66.43 67.207 -6.1757 87 38 3 0 0 0 0.023164 2 47799 47686;47799 60.39 44.542 1 148690000 72406 9978 48388 49440 84257;84258 84258 0.0293159582259932 VPVEEFPLR 9 Unmodified _VPVEEFPLR_ 0 0 0 nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;ENST00000403682.7_1_22:20748811-20761255:+|nuORF nc|ENSG00000185252|Q16587-3|ZNF74 nc|ENSG00000185252|Q16587-3|ZNF74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5382385253906 3 362.537842 1084.5917 -0.1285 -4.6587E-05 0.89595 0.00032482 0.76745 0.00027823 362.5381648068903 37.676 0.26741 37.693 37.614 37.881 0.01704 26 12 4 0 0 0 0.48152 1 20022 20022 5.2969 0.39987 1 3460500 72407 9352 48389 49441 84259 84259 0.05278315994382865 VPVEEPIAF 9 Unmodified _VPVEEPIAF_ 0 0 0 ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.7718505859375 2 500.771126 999.527698 0.24042 0.00012039 -1.9478 -0.00097541 -1.7074 -0.00085502 501.27040918967646 70.153 0.19153 70.153 70.088 70.28 0 18 10 2 0 0 0 0.12841 1 39116 39116 30.225 18.585 1 1049000 72408 9865 48390 49442 84260 84260 0.02791535837422998 VPVEEQEEF 9 Unmodified _VPVEEQEEF_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2;ENST00000527439.5_1_1:163307827-163315644:+|nuORF ENSG00000143228|ENST00000271452|NUF2 ENSG00000143228|ENST00000271452|NUF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2560424804688 2 553.256037 1104.49752 0.24004 0.0001328 0.21773 0.00012046 0.45776 0.00025326 553.2558714889329 42.014 0.37496 42.014 41.804 42.179 0 57 19 5 0 0 0 0.022193 2 22746 22635;22746 61.357 35.958 1 32134000 72409 5481 48391 49443 84261;84262 84262 -0.050548676184234864 VPVEGDEVTY 10 Unmodified _VPVEGDEVTY_ 0 0 0 ENSG00000153048|ENST00000311052|CARHSP1;ENSG00000172346|ENST00000306149|CSDC2 ENSG00000153048|ENST00000311052|CARHSP1 ENSG00000153048|ENST00000311052|CARHSP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2643432617188 2 554.263862 1106.51317 -0.099098 -5.4926E-05 0.27245 0.00015101 0.17336 9.6086E-05 554.2640604683958 41.364 0.53089 41.364 41.137 41.668 0 72 26 4 0 0 0 0.037795 2 22220 22220;22336 64.236 38.837 1 38408000 72410 6231 48392 49444 84263;84264 84263 -0.035825811013637576 VPVEGDEVTY 10 Unmodified _VPVEGDEVTY_ 0 0 0 ENSG00000153048|ENST00000311052|CARHSP1;ENSG00000172346|ENST00000306149|CSDC2 ENSG00000153048|ENST00000311052|CARHSP1 ENSG00000153048|ENST00000311052|CARHSP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.788330078125 2 554.263862 1106.51317 0.77009 0.00042683 1.0043 0.00055663 1.7744 0.00098346 554.2653030900717 48.867 0.5417 43.471 43.12 43.661 -5.3961 49 32 3 0 0 0 0.22327 1 30528 30528 19.257 8.4331 1 62435000 72411 6231 48392 49444 84265 84265 -0.035825811013637576 VPVFFIMGLF 10 Unmodified _VPVFFIMGLF_ 0 0 0 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 ENSG00000181826|ENST00000454158|RELL1 MSMS AL20221201_MKP_PDAC_01 4 585.656005859375 2 585.325014 1168.63547 NaN NaN NaN NaN NaN NaN NaN 85.19 1 79.014 78.514 79.514 -6.1757 0 0 0 0.53246 1 56090 56090 24.674 3.8027 1 72412 8998 48393 49445 84266 84266 0.05790209167162175 VPVFQLLR 8 Unmodified _VPVFQLLR_ 0 0 0 ENST00000369534.7_1_X:154033559-154033682:-|nuORF ENST00000369534.7_1_X:154033559-154033682:-|nuORF ENST00000369534.7_1_X:154033559-154033682:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.3062438964844 2 486.30547 970.596387 NaN NaN NaN NaN NaN NaN NaN 31.739 1 31.61 31.11 32.11 -0.12915 0 0 0 0.97444 1 16510 16510 0.79363 0 1 72413 12311 48394 49446 84267 84267 0.10991244927811294 VPVFVWFM 8 Unmodified _VPVFVWFM_ 0 0 0 REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.775146484375 2 512.769874 1023.5252 0.25717 0.00013187 2.2561 0.0011569 2.5133 0.0012887 512.7708078917116 79.199 0.22862 79.199 79.121 79.35 0 14 9 2 0 0 0 0.61999 1 44010 44010 24.21 0 1 1093900 + 72414 28563 48395 49447 84268 84268 0.014374088987779032 VPVFVWFM 8 Unmodified _VPVFVWFM_ 0 0 0 REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF REV__ENST00000538906.5_2_16:31084355-31084742:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.769874 1023.5252 0.25717 0.00013187 2.2561 0.0011569 2.5133 0.0012887 512.7708078917116 79.199 0.22862 79.199 79.121 79.35 0 0 0 NaN 24.21 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1093900 + 72415 28563 48395 49447 0.014374088987779032 VPVGEKTTY 9 Unmodified _VPVGEKTTY_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2671508789062 2 497.266207 992.517862 -0.13285 -6.6062E-05 1.0879 0.00054095 0.955 0.00047489 497.2666902981455 23.005 0.4325 23.005 22.832 23.264 0 80 23 5 0 0 0 0.047788 2 11685 11685;11787 45.7 13.394 1 29225000 72416 7110 48396 49448 84269;84270 84269 0.021303478320419345 VPVGEKTTY 9 Unmodified _VPVGEKTTY_ 0 0 0 ENSG00000163975|ENST00000296350|MELTF;ENST00000469783.1_1_3:196715998-196731024:-|nuORF ENSG00000163975|ENST00000296350|MELTF ENSG00000163975|ENST00000296350|MELTF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2666625976562 2 497.266207 992.517862 0.44929 0.00022342 0.68349 0.00033988 1.1328 0.00056329 497.26670694287037 26.405 0.45017 23.454 23.244 23.694 -2.9511 70 23 5 0 0 0 0.040683 1 14629 14629 49.554 9.597 1 90123000 72417 7110 48396 49448 84271 84271 0.021303478320419345 VPVGGELPTY 10 Unmodified _VPVGGELPTY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2738647460938 2 516.274032 1030.53351 0.81153 0.00041897 1.1107 0.00057341 1.9222 0.00099238 516.2738847970278 54.141 0.60382 54.141 53.705 54.309 0 57 27 3 0 0 0 0.037795 1 30013 30013 64.236 20.378 1 7747900 72418 16031 48397 49449 84272 84272 0.01946634349087617 VPVGGELPTY 10 Unmodified _VPVGGELPTY_ 0 0 0 nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 nc|ENSG00000052841|Q96AE7-2|TTC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.5556640625 1 1031.54079 1030.53351 0.20272 0.00020911 3.702 0.0038187 3.9047 0.0040279 1032.5513365726717 54.143 0.21961 54.143 54.051 54.271 0 15 9 2 0 0 0 0.54684 1 30027 30027 13.906 4.5229 1 3865500 72419 16031 48397 49449 84273 84273 0.01946634349087617 VPVGHLVVL 9 Unmodified _VPVGHLVVL_ 0 0 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7993469238281 2 466.80002 931.585488 0.42195 0.00019697 -0.95748 -0.00044695 -0.53553 -0.00024999 466.79942626542226 62.925 0.27615 62.439 62.306 62.583 -0.48617 25 13 2 0 0 0 0.047696 1 34268 34268 45.75 24.003 1 6313900 72420 2653 48398 49450 84274 84274 0.11695842553513103 VPVGHLVVL 9 Unmodified _VPVGHLVVL_ 0 0 0 ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1 ENST00000507765.1_1_4:6290695-6304192:+|nuORF ENST00000507765.1_1_4:6290695-6304192:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.8001708984375 2 466.80002 931.585488 0.54944 0.00025648 -0.032296 -1.5076E-05 0.51715 0.0002414 466.8000303686934 67.808 0.37422 61.632 61.48 61.854 -6.1757 38 21 2 0 0 0 0.016115 2 44201 44201;44350 67.413 39.24 1 22989000 72421 2653 48398 49450 84275;84276 84275 0.11695842553513103 VPVGKATIL 9 Unmodified _VPVGKATIL_ 0 0 0 ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A ENSG00000198924|ENST00000361384|DCLRE1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2929382324219 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.61381 1 71812 71812 0.52476 0 1 16154000 72422 10198 48399 49451 84277 84277 0.11708136316622131 VPVGNSPAL 9 Unmodified _VPVGNSPAL_ 0 0 0 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2438659667969 2 427.242535 852.470518 -0.48891 -0.00020888 0.86689 0.00037037 0.37798 0.00016149 427.2428971088436 41.261 0.3218 41.261 41.1 41.422 0 29 15 3 0 0 0 0.06187 1 22207 22207 42.095 13.608 1 3575900 72423 4118 48400 49452 84278 84278 0.03838113351696393 VPVGNSPAL 9 Unmodified _VPVGNSPAL_ 0 0 0 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 ENSG00000129173|ENST00000250024|E2F8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.2432556152344 2 427.242535 852.470518 0.82596 0.00035289 0.058907 2.5168E-05 0.88487 0.00037805 427.24256797150906 48.024 0.42934 42.79 42.657 43.087 -5.2339 38 25 2 0 0 0 0.012148 1 29872 29872 74.423 13.065 1 14150000 72424 4118 48400 49452 84279 84279 0.03838113351696393 VPVHFFRLHK 10 Unmodified _VPVHFFRLHK_ 0 0 0 nc|ENSG00000153303|Q8N878-2|FRMD1;ENSG00000153303|ENST00000283309|FRMD1 nc|ENSG00000153303|Q8N878-2|FRMD1 nc|ENSG00000153303|Q8N878-2|FRMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.252685546875 3 427.252258 1278.73495 0.26963 0.0001152 0.74479 0.00031821 1.0144 0.00043341 427.25247665551075 75.608 1.9244 75.656 74.209 76.133 0.047943 153 88 4 0 0 0 0.7191 1 41969 41969 0.77653 0.078866 1 5807900 72425 6257 48401 49453 84280 84280 0.10672787896123737 VPVHPGGP 8 Unmodified _VPVHPGGP_ 0 0 0 ENST00000274629.8_1_5:169805486-169810683:-|nuORF ENST00000274629.8_1_5:169805486-169810683:-|nuORF ENST00000274629.8_1_5:169805486-169810683:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.21142578125 2 380.211038 758.407523 0.96967 0.00036868 0.15639 5.946E-05 1.1261 0.00042814 380.21106044339797 46.294 0.50077 41.293 40.972 41.473 -5.0007 70 34 3 0 0 0 0.80044 1 28587 28587 6.3541 0 1 52346000 72426 11386 48402 49454 84281 84281 0.01865592354340606 VPVHSGAHFL 10 Unmodified _VPVHSGAHFL_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2894287109375 2 532.287808 1062.56106 0.40024 0.00021304 -0.59704 -0.0003178 -0.1968 -0.00010475 532.2871115392729 88.761 0.37003 88.257 88.046 88.416 -0.50423 24 15 2 0 0 0 0.69064 1 48489 48489 3.9444 1.0552 1 719460 72427 824 48403 49455 84282 84282 0.03228582399992774 VPVIDYLM 8 Unmodified _VPVIDYLM_ 0 0 0 REV__ENSG00000180611|ENST00000392452|MB21D2 REV__ENSG00000180611|ENST00000392452|MB21D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2568664550781 2 475.256797 948.499041 NaN NaN NaN NaN NaN NaN NaN 32.867 1 32.897 32.397 33.397 0.029743 0 0 0 0.97444 1 17270 17270 2.8892 0 1 + 72428 23158 48404 49456 84283 84283 0.02273094936651887 VPVINITY 8 Unmodified _VPVINITY_ 0 0 0 ENSG00000151491|ENST00000281172|EPS8;nc|ENSG00000151491|Q12929-2|EPS8 ENSG00000151491|ENST00000281172|EPS8 ENSG00000151491|ENST00000281172|EPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 918.5338134765625 1 918.529495 917.522219 0.58767 0.00053979 1.3 0.0011941 1.8877 0.0017339 918.5309016072617 77.899 0.54533 71.723 71.428 71.973 -6.1757 47 30 2 0 0 0 0.15558 2 51075 50949;51075 85.357 34.502 1 12302000 72429 6120 48405 49457 84284;84285 84285 0.06015857045611028 VPVIRVGG 8 Unmodified _VPVIRVGG_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.7557373046875 2 398.755613 795.496673 NaN NaN NaN NaN NaN NaN NaN 18.717 1 18.74 18.24 19.24 0.023106 0 0 0 0.93066 1 9405 9405 14.582 0 1 + 72430 23865 48406 49458 84286 84286 0.09074427313851174 VPVKKDLRL 9 Unmodified _VPVKKDLRL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MSMS AL20221201_MKP_PDAC_01 4 534.3507080078125 2 534.350409 1066.68626 NaN NaN NaN NaN NaN NaN NaN 104.6 1 98.421 97.921 98.921 -6.1757 0 0 0 0.84737 1 70037 70037 1.8442 0.51471 1 72431 583 48407 49459 84287 84287 0.1555887453635023 VPVKNLKRQ 9 Unmodified _VPVKNLKRQ_ 0 0 0 ENST00000472823.5_1_6:29576484-29596894:-|nuORF;nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 ENST00000472823.5_1_6:29576484-29596894:-|nuORF ENST00000472823.5_1_6:29576484-29596894:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 360.8713073730469 3 361.232864 1080.67676 1.1076 0.0004001 0.15112 5.4588E-05 1.2587 0.00045468 361.2329779982667 27.568 0.26421 24.532 24.416 24.68 -3.0365 15 12 2 0 0 0 0.20528 1 15329 15329 5.2969 0 1 9551800 72432 10317 48408 49460 84288 84288 0.139651062508392 VPVKNLKRQ 9 Unmodified _VPVKNLKRQ_ 0 0 0 ENST00000472823.5_1_6:29576484-29596894:-|nuORF;nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 ENST00000472823.5_1_6:29576484-29596894:-|nuORF ENST00000472823.5_1_6:29576484-29596894:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 361.232864 1080.67676 -0.39271 -0.00014186 0.6872 0.00024824 0.29449 0.00010638 361.23311240555347 24.735 0.19966 24.735 24.624 24.823 0 0.086075 0.00058997 NaN 5.2969 22 11 2 NaN NaN NaN NaN 0 NaN NaN 0 851080 72433 10317 48408 49460 0.139651062508392 VPVKNLKRQ 9 Unmodified _VPVKNLKRQ_ 0 0 0 ENST00000472823.5_1_6:29576484-29596894:-|nuORF;nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 ENST00000472823.5_1_6:29576484-29596894:-|nuORF ENST00000472823.5_1_6:29576484-29596894:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 361.232864 1080.67676 0.11914 4.3037E-05 -0.13739 -4.9629E-05 -0.018249 -6.592E-06 361.23277214512325 24.656 0.51168 24.68 24.462 24.974 0.024427 0.031045 -0.00030364 NaN 5.2969 42 21 3 NaN NaN NaN NaN 0 NaN NaN 0 24905000 72434 10317 48408 49460 0.139651062508392 VPVKTKSRVH 10 Unmodified _VPVKTKSRVH_ 0 0 0 REV__ENSG00000213886|ENST00000377050|UBD REV__ENSG00000213886|ENST00000377050|UBD MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.2130126953125 3 384.240018 1149.69823 1.2222 0.00046963 -0.39984 -0.00015364 0.82239 0.000316 384.23972629859185 22.134 0.28581 19.399 19.256 19.542 -2.7348 16 15 2 0 0 0 0.23895 1 11956 11956 0.77653 0.61721 1 1206000 + 72435 24295 48409 49461 84289 84289 0.1293649127956087 VPVKVTDRF 9 Unmodified _VPVKVTDRF_ 0 0 0 ENSG00000247315|ENST00000500893|ZCCHC3;nc|ENSG00000247315|Q9NUD5-2|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 MSMS AL20221201_MKP_PDAC_01 4 354.2108154296875 3 354.209836 1059.60768 NaN NaN NaN NaN NaN NaN NaN 38.819 1 34.368 33.868 34.868 -4.4509 0 0 0 0.12101 1 22957 22957 31.636 20.836 1 72436 10737 48410 49462 84290 84290 0.08026022231297247 VPVLILYFL 9 Unmodified _VPVLILYFL_ 0 0 0 REV__ENST00000428402.6_1_2:175087763-175087829:-|nuORF REV__ENST00000428402.6_1_2:175087763-175087829:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.8419189453125 2 538.841354 1075.66815 1.3042 0.00070275 0.14696 7.9187E-05 1.4512 0.00078194 538.8414909378357 102.92 0.059601 96.743 96.717 96.777 -6.1757 35 15 3 0 0 0 0.085487 1 69053 69053 36.466 0 1 6140600 + 72437 26937 48411 49463 84291 84291 0.13334739561673814 VPVLLGGN 8 Unmodified _VPVLLGGN_ 0 0 0 ENST00000588896.1_1_12:1904311-1905086:-|nuORF;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4 ENST00000588896.1_1_12:1904311-1905086:-|nuORF ENST00000588896.1_1_12:1904311-1905086:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5819396972656 2 384.734346 767.454139 -0.22998 -8.8481E-05 2.1125 0.00081275 1.8825 0.00072427 384.7359396973044 36.134 0.40324 36.159 36.053 36.457 0.024967 22 17 2 0 0 0 8.7369 1 19225 19225 0.79363 0 1 2950400 72438 15657 48412 49464 84292 84292 0.0611103218561766 VPVLLHLPR 9 Unmodified _VPVLLHLPR_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3394165039062 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 105.59 1 99.418 98.918 99.918 -6.1757 0 0 0 0.85798 1 70743 70743 0.52476 0 1 72439 14231 48413 49465 84293 84293 0.14550909227500597 VPVLLHLPR 9 Unmodified _VPVLLHLPR_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3413696289062 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 106.39 1 100.22 99.716 100.72 -6.1757 0 0 0 0.85798 1 71218 71218 0.52476 0 1 72440 14231 48413 49465 84294 84294 0.14550909227500597 VPVLLHLPR 9 Unmodified _VPVLLHLPR_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.339599609375 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 106.74 1 100.57 100.07 101.07 -6.1757 0 0 0 0.85798 1 71436 71436 0.52476 0 1 72441 14231 48413 49465 84295 84295 0.14550909227500597 VPVLLHLPR 9 Unmodified _VPVLLHLPR_ 0 0 0 ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF ENST00000489097.5_1_1:6526697-6527309:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.339111328125 2 522.339844 1042.66514 NaN NaN NaN NaN NaN NaN NaN 107.12 1 100.95 100.45 101.45 -6.1757 0 0 0 0.85798 1 71668 71668 0.52476 0 1 72442 14231 48413 49465 84296 84296 0.14550909227500597 VPVLLIIVSV 10 Unmodified _VPVLLIIVSV_ 0 0 0 REV__nc|ENSG00000182477|P59922|OR2B8P REV__nc|ENSG00000182477|P59922|OR2B8P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.2434387207031 3 351.242366 1050.70527 -0.36043 -0.0001266 2.2888 0.00080394 1.9284 0.00067734 351.5773181490681 29.48 0.1848 29.48 29.37 29.555 0 15 9 2 0 0 0 0.72464 1 15257 15257 0.15932 0 1 4839700 + 72443 29835 48414 49466 84297 84297 0.18194411107424457 VPVLLIIVSV 10 Unmodified _VPVLLIIVSV_ 0 0 0 REV__nc|ENSG00000182477|P59922|OR2B8P REV__nc|ENSG00000182477|P59922|OR2B8P MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 351.242366 1050.70527 -0.36043 -0.0001266 2.2888 0.00080394 1.9284 0.00067734 351.5773181490681 29.48 0.1848 29.48 29.37 29.555 0 0.10973 -0.00045747 NaN 0.15932 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4839700 + 72444 29835 48414 49466 0.18194411107424457 VPVLLIIVSV 10 Unmodified _VPVLLIIVSV_ 0 0 0 REV__nc|ENSG00000182477|P59922|OR2B8P REV__nc|ENSG00000182477|P59922|OR2B8P MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 351.242366 1050.70527 -0.0641 -2.2515E-05 2.7245 0.00095695 2.6604 0.00093444 351.24321902818014 29.323 0.3306 29.353 29.102 29.432 0.030106 -0.016591 1.5619E-06 NaN 0.15932 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6842000 + 72445 29835 48414 49466 0.18194411107424457 VPVLLIIVSV 10 Unmodified _VPVLLIIVSV_ 0 0 0 REV__nc|ENSG00000182477|P59922|OR2B8P REV__nc|ENSG00000182477|P59922|OR2B8P MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 351.242366 1050.70527 1.4827 0.0005208 3.0633 0.001076 4.546 0.0015968 351.2433031872075 33.262 0.25667 29.277 29.112 29.369 -3.9853 -0.09314 0.0003586 NaN 0.15932 24 15 3 NaN NaN NaN NaN 0 NaN NaN 0 9808100 + 72446 29835 48414 49466 0.18194411107424457 VPVLSWIH 8 Unmodified _VPVLSWIH_ 0 0 0 nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.75244140625 2 475.776545 949.538538 0.76916 0.00036595 0.29864 0.00014209 1.0678 0.00050804 475.7764503835179 72.878 0.24679 72.403 72.273 72.519 -0.47588 12 10 2 0 0 0 8.7369 1 39840 39840 6.3541 0 1 273460 72447 864 48415 49467 84298 84298 0.06174983002370027 VPVLSWIH 8 Unmodified _VPVLSWIH_ 0 0 0 nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;ENSG00000063601|ENST00000445323|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 nc|ENSG00000063601|Q13613-2|MTMR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 475.776545 949.538538 0.061587 2.9302E-05 1.144 0.00054429 1.2056 0.00057359 475.77687677176874 72.346 0.27095 72.388 72.256 72.527 0.041725 -0.0074157 0.00025619 NaN 6.3541 16 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1460900 72448 864 48415 49467 0.06174983002370027 VPVLTALISY 10 Unmodified _VPVLTALISY_ 0 0 0 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000463808.1_1_16:2122597-2124590:+|nuORF;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2 nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-5|TSC2 nc|ENSG00000103197|P49815-7|TSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.3246459960938 2 538.323525 1074.6325 0.78992 0.00042523 3.4334 0.0018483 4.2233 0.0022735 538.32333233627 100.5 0.11862 94.329 94.27 94.389 -6.1757 18 6 4 0 0 0 0.06987 1 67249 67249 74.423 40.32 1 52202000 72449 16096;16097 48416 49468 84299 84299 0.09816657314013355 VPVLVEEAF 9 Unmodified _VPVLVEEAF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000496727.1_1_17:18154365-18154758:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.77978515625 2 501.778951 1001.54335 0.41794 0.00020971 2.6742 0.0013419 3.0921 0.0015516 501.7799713640745 79.241 0.25224 79.241 79.142 79.394 0 33 10 4 0 0 0 0.068777 1 44022 44022 40.449 22.314 1 10494000 72450 8706 48417 49469 84300 84300 0.04263822354471358 VPVLVEEAF 9 Unmodified _VPVLVEEAF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000496727.1_1_17:18154365-18154758:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7796936035156 2 501.778951 1001.54335 NaN NaN NaN NaN NaN NaN NaN 79.826 1 79.337 78.837 79.837 -0.48932 0 0 0 0.11925 1 43724 43724 40.449 25.867 1 72451 8706 48417 49469 84301 84301 0.04263822354471358 VPVLVEEAF 9 Unmodified _VPVLVEEAF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000496727.1_1_17:18154365-18154758:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 501.7796630859375 2 501.778951 1001.54335 NaN NaN NaN NaN NaN NaN NaN 87.033 1 80.857 80.357 81.357 -6.1757 0 0 0 0.11925 1 57374 57374 40.449 22.314 1 72452 8706 48417 49469 84302 84302 0.04263822354471358 VPVLVEEAF 9 Unmodified _VPVLVEEAF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000496727.1_1_17:18154365-18154758:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 501.7794494628906 2 501.778951 1001.54335 NaN NaN NaN NaN NaN NaN NaN 87.246 1 81.071 80.571 81.571 -6.1757 0 0 0 0.11925 1 57526 57526 40.449 25.867 1 72453 8706 48417 49469 84303 84303 0.04263822354471358 VPVMLEQEY 9 Unmodified _VPVMLEQEY_ 0 0 0 REV__ENSG00000106025|ENST00000222747|TSPAN12 REV__ENSG00000106025|ENST00000222747|TSPAN12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.8170776367188 2 554.273175 1106.5318 0.95373 0.00052863 2.3565 0.0013062 3.3103 0.0018348 554.2743658871318 100.51 0.11991 94.332 94.254 94.374 -6.1757 13 6 3 0 0 0 0.203 1 67243 67243 2.3027 0 1 31007000 + 72454 18483 48418 49470 84304 84304 -0.0172074273114049 VPVMTQPTLIY 11 Unmodified _VPVMTQPTLIY_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3480224609375 2 631.346674 1260.6788 0.77028 0.00048631 -0.03124 -1.9724E-05 0.73904 0.00046659 631.3469450429998 83.955 0.41904 77.779 77.528 77.948 -6.1757 53 21 4 0 0 0 0.0047291 2 55280 55162;55280 75.761 48.132 1 19742000 72455 1117 48419 49471 84305;84306 84306 0.05888354153785258 VPVNFAEFS 9 Unmodified _VPVNFAEFS_ 0 0 0 ENSG00000029993|ENST00000325307|HMGB3 ENSG00000029993|ENST00000325307|HMGB3 ENSG00000029993|ENST00000325307|HMGB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2516479492188 2 505.2531 1008.49165 1.0192 0.00051495 0.96426 0.00048719 1.9835 0.0010021 505.2530310451417 46.347 0.49678 46.347 46.088 46.585 0 43 23 2 0 0 0 0.10734 1 25269 25269 32.305 0 1 4676900 72456 582 48420 49472 84307 84307 -0.01225921339425895 VPVPEDPDLP 10 Unmodified _VPVPEDPDLP_ 0 0 0 ENSG00000166261|ENST00000530393|ZNF202 ENSG00000166261|ENST00000530393|ZNF202 ENSG00000166261|ENST00000530393|ZNF202 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.8550720214844 3 359.853607 1076.53899 -0.42666 -0.00015353 1.6265 0.00058529 1.1998 0.00043176 359.85420851410663 20.354 0.11391 20.354 20.255 20.369 0 13 7 2 0 0 0 0.69377 1 10213 10213 1.7423 0.54893 1 797640 72457 7459 48421 49473 84308 84308 0.003783131409136331 VPVPHTTAL 9 Unmodified _VPVPHTTAL_ 0 0 0 nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1 nc|ENSG00000086062|P15291-2|B4GALT1 nc|ENSG00000086062|P15291-2|B4GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7716369628906 2 467.77146 933.528367 0.69843 0.00032671 -0.23537 -0.0001101 0.46306 0.00021661 467.7713024409381 39.066 0.34034 39.066 38.903 39.244 0 34 15 3 0 0 0 0.0094915 2 20882 20882;20991 81.864 43.713 1 5775900 72458 1428 48422 49474 84309;84310 84309 0.058943752771256186 VPVPHTTAL 9 Unmodified _VPVPHTTAL_ 0 0 0 nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1 nc|ENSG00000086062|P15291-2|B4GALT1 nc|ENSG00000086062|P15291-2|B4GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7708740234375 2 467.77146 933.528367 -0.071775 -3.3574E-05 -0.27143 -0.00012697 -0.3432 -0.00016054 467.7712623679883 39.344 0.34969 39.057 38.904 39.254 -0.28687 29 16 2 0 0 0 0.0086179 1 20730 20730 89.427 45.02 1 6895000 72459 1428 48422 49474 84311 84311 0.058943752771256186 VPVPPLPEY 9 Unmodified _VPVPPLPEY_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7814636230469 2 505.781493 1009.54843 0.24092 0.00012185 0.005905 2.9867E-06 0.24683 0.00012484 505.78141564353325 70.337 0.68349 70.337 70.088 70.772 0 98 37 4 0 0 0 0.012158 3 39157 39157;39263;39363 74.396 58.628 1 4525800 72460 3219 48423 49475 84312;84313;84314 84312 0.04404126217082194 VPVPPLPEY 9 Unmodified _VPVPPLPEY_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7813720703125 2 505.781493 1009.54843 0.022684 1.1473E-05 0.11623 5.8789E-05 0.13892 7.0262E-05 505.78150975014387 70.884 1.0341 70.407 70.112 71.146 -0.47735 144 48 4 0 0 0 0.012158 3 38715 38715;38829;38926 74.396 58.628 1 18995000 72461 3219 48423 49475 84315;84316;84317 84315 0.04404126217082194 VPVPPLPEY 9 Unmodified _VPVPPLPEY_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2815551757812 2 505.781493 1009.54843 0.78306 0.00039606 -2.0218 -0.0010226 -1.2387 -0.00062651 506.28124526456276 70.341 0.70249 70.376 70.133 70.835 0.035507 62 32 3 0 0 0 0.040472 2 38718 38718;38838 49.669 35.087 1 4002000 72462 3219 48423 49475 84318;84319 84318 0.04404126217082194 VPVPPLPEY 9 Unmodified _VPVPPLPEY_ 0 0 0 ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB ENSG00000116459|ENST00000369722|ATP5PB MULTI-MSMS AL20221201_MKP_PDAC_01 4 1010.557373046875 1 1010.55571 1009.54843 0.12583 0.00012716 0.12613 0.00012746 0.25196 0.00025462 1010.5550598941544 78.447 0.68974 72.271 71.99 72.68 -6.1757 68 42 2 0 0 0 0.0090851 2 51526 51431;51526 85.357 59.015 1 17652000 72463 3219 48423 49475 84320;84321 84321 0.04404126217082194 VPVPPNVAF 9 Unmodified _VPVPPNVAF_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.2680358886719 2 470.268553 938.522553 0.52346 0.00024617 -0.0062781 -2.9524E-06 0.51718 0.00024321 470.26835687451484 68.122 1.578 67.64 67.208 68.786 -0.48219 187 71 3 0 0 0 0.012158 7 37118 37118;37221;37327;37429;37538;37649;37777 74.396 52.65 1 8569800 72464 1198 48424 49476 84322;84323;84324;84325;84326;84327;84328 84322 0.05083276765469691 VPVPPNVAF 9 Unmodified _VPVPPNVAF_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.2689514160156 2 470.268553 938.522553 NaN NaN NaN NaN NaN NaN NaN 67.642 1 67.66 67.16 68.16 0.018028 0 0 0 0.13852 1 37140 37140 38.151 18.712 1 72465 1198 48424 49476 84329 84329 0.05083276765469691 VPVPPNVAF 9 Unmodified _VPVPPNVAF_ 0 0 0 nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000600274.5_1_19:42396347-42410935:+|nuORF nc|ENSG00000076928|Q92888-2|ARHGEF1 nc|ENSG00000076928|Q92888-2|ARHGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.2683715820312 2 470.268553 938.522553 0.88779 0.0004175 0.028886 1.3584E-05 0.91667 0.00043108 470.268563804786 74.821 1.5444 68.645 67.903 69.448 -6.1757 201 82 3 0 0 0 0.0081063 8 48677 48560;48677;48795;48920;49046;49165;49295;49428 93.883 64.375 1 44286000 72466 1198 48424 49476 84330;84331;84332;84333;84334;84335;84336;84337 84331 0.05083276765469691 VPVPQLKSF 9 Unmodified _VPVPQLKSF_ 0 0 0 ENST00000479123.1_1_2:3623223-3624265:+|nuORF;ENSG00000171863|ENST00000645674|RPS7 ENST00000479123.1_1_2:3623223-3624265:+|nuORF ENST00000479123.1_1_2:3623223-3624265:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.3031921386719 2 507.80276 1013.59097 0.24885 0.00012637 -0.9328 -0.00047368 -0.68395 -0.00034731 507.8029135344314 56.48 0.25113 56.411 56.287 56.538 -0.068737 18 12 2 0 0 0 0.032796 1 30731 30731 53.833 21.527 1 3047500 72467 8153 48425 49477 84338 84338 0.08471521345325073 VPVPSPDASY 10 Unmodified _VPVPSPDASY_ 0 0 0 REV__ENST00000380441.5_1_6:3000237-3004829:+|nuORF REV__ENST00000380441.5_1_6:3000237-3004829:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2555541992188 2 516.25584 1030.49713 -0.32823 -0.00016945 -1.78 -0.00091893 -2.1082 -0.0010884 516.2550024899468 41.293 0.35938 41.293 41.082 41.441 0 26 17 2 0 0 0 0.31022 2 22197 22197;22318 26.884 3.7238 1 5662900 + 72468 26311 48426 49478 84339;84340 84339 -0.016902425476018834 VPVPSPDASY 10 Unmodified _VPVPSPDASY_ 0 0 0 REV__ENST00000380441.5_1_6:3000237-3004829:+|nuORF REV__ENST00000380441.5_1_6:3000237-3004829:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.211669921875 2 516.25584 1030.49713 -0.32823 -0.00016945 -1.78 -0.00091893 -2.1082 -0.0010884 516.2550024899468 41.293 0.35938 41.293 41.082 41.441 0 26 17 2 0 0 0 0.22149 1 22298 22298 20.454 6.5476 1 5662900 + 72469 26311 48426 49478 84341 84341 -0.016902425476018834 VPVPSSTSF 9 Unmodified _VPVPSSTSF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|120|1|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|120|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 920.4713134765625 1 920.472374 919.465098 -0.67646 -0.00062266 0.9848 0.00090648 0.30834 0.00028382 920.4731248759205 55.526 0.26424 55.526 55.347 55.611 0 19 11 2 0 0 0 0.087258 1 30806 30806 36.044 11.37 1 1571000 + 72470 29438 48427 49479 84342 84342 0.002143897692576502 VPVPSSTSF 9 Unmodified _VPVPSSTSF_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|120|1|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|120|1|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7400207519531 2 460.739825 919.465098 -0.26671 -0.00012289 0.40208 0.00018525 0.13537 6.2369E-05 460.74006174226975 55.507 0.26424 55.507 55.347 55.611 0 22 11 3 0 0 0 0.25297 1 30816 30816 19.439 9.2556 1 2544100 + 72471 29438 48427 49479 84343 84343 0.002143897692576502 VPVQDQVLL 9 Unmodified _VPVQDQVLL_ 0 0 0 ENSG00000213886|ENST00000377050|UBD ENSG00000213886|ENST00000377050|UBD ENSG00000213886|ENST00000377050|UBD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7975158691406 2 505.797675 1009.5808 0.43393 0.00021948 -0.37378 -0.00018906 0.060152 3.0425E-05 505.79744524023323 62.957 0.397 62.957 62.749 63.146 0 37 16 3 0 0 0 0.28023 1 35184 35184 18.146 4.2403 1 3030600 72472 10462 48428 49480 84344 84344 0.07638913620110088 VPVRDIPAF 9 Unmodified _VPVRDIPAF_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000574501.1_1_17:1964788-1964956:-|nuORF;ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2922058105469 2 507.292559 1012.57057 1.1267 0.00057157 -0.44505 -0.00022577 0.68165 0.0003458 507.2922802307996 54.607 0.27578 54.607 54.44 54.715 0 21 11 2 0 0 0 0.1685 1 30292 30292 26.268 11.43 1 1630000 72473 1024 48429 49481 84345 84345 0.06478350685517853 VPVRDIPAF 9 Unmodified _VPVRDIPAF_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000574501.1_1_17:1964788-1964956:-|nuORF;ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2929077148438 2 507.292559 1012.57057 -0.052453 -2.6609E-05 0.79404 0.00040281 0.74159 0.0003762 507.2929430551838 55.138 0.36961 54.66 54.471 54.841 -0.47798 59 17 4 0 0 0 0.025842 2 29938 29838;29938 57.722 35.975 1 31193000 72474 1024 48429 49481 84346;84347 84347 0.06478350685517853 VPVRDIPAF 9 Unmodified _VPVRDIPAF_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000574501.1_1_17:1964788-1964956:-|nuORF;ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.2933349609375 2 507.292559 1012.57057 0.50813 0.00025777 0.11725 5.9479E-05 0.62538 0.00031725 507.29269996286496 54.807 0.24282 54.74 54.6 54.843 -0.06694 19 11 2 0 0 0 0.10247 1 29754 29754 32.786 14.639 1 2525100 72475 1024 48429 49481 84348 84348 0.06478350685517853 VPVRDIPAF 9 Unmodified _VPVRDIPAF_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6;nc|ENSG00000070366|Q86US8-2|SMG6;ENST00000573166.5_1_17:1964788-1990458:-|nuORF;nc|ENSG00000070366|Q86US8-3|SMG6;ENST00000574501.1_1_17:1964788-1964956:-|nuORF;ENST00000573153.5_1_17:1964788-1969297:-|nuORF ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2934265136719 2 507.292559 1012.57057 1.0228 0.00051885 1.3818 0.00070099 2.4046 0.0012198 507.29235647306723 60.669 0.58694 54.522 54.24 54.827 -6.1478 72 31 4 0 0 0 0.044296 2 39138 39014;39138 47.594 25.848 1 111890000 72476 1024 48429 49481 84349;84350 84350 0.06478350685517853 VPVRGTAAF 9 Unmodified _VPVRGTAAF_ 0 0 0 nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI nc|ENSG00000118816|Q14094-2|CCNI nc|ENSG00000118816|Q14094-2|CCNI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.2640380859375 2 459.263802 916.513051 -0.37479 -0.00017213 0.98713 0.00045335 0.61234 0.00028123 459.2641817277032 33.314 0.28896 33.155 33.008 33.297 -0.15918 19 11 2 0 0 0 0.2324 1 17368 17368 20.415 1.1575 1 1051900 72477 3394 48430 49482 84351 84351 0.05145508479949967 VPVRLRLKP 9 Unmodified _VPVRLRLKP_ 0 0 0 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 ENSG00000173442|ENST00000309295|EHBP1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3667602539062 2 539.366393 1076.71823 -0.60012 -0.00032369 0.39837 0.00021487 -0.20175 -0.00010882 539.3665668237877 105.96 0.10638 105.91 105.86 105.96 -0.048103 14 8 2 0 0 0 0.62242 1 58721 58721 0 0 1 4379600 72478 8325 48431 49483 84352 84352 0.18294287010189692 VPVRWVVKV 9 Unmodified _VPVRWVVKV_ 0 0 0 nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7 nc|ENSG00000184313|Q68CQ1-2|MROH7 nc|ENSG00000184313|Q68CQ1-2|MROH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.348388671875 2 541.347669 1080.68079 NaN NaN NaN NaN NaN NaN NaN 26.51 1 26.51 26.01 27.01 0 0 0 0 0.85737 1 13630 13630 0.6015 0 1 72479 9245 48432 49484 84353 84353 0.14367195744557648 VPVSFISTL 9 Unmodified _VPVSFISTL_ 0 0 0 ENSG00000254636|ENST00000528446|ARMS2 ENSG00000254636|ENST00000528446|ARMS2 ENSG00000254636|ENST00000528446|ARMS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7805786132812 2 481.781493 961.548434 0.82218 0.00039611 0.037887 1.8253E-05 0.86007 0.00041437 481.78165193238596 74.222 0.2966 73.746 73.613 73.91 -0.47588 15 11 2 0 0 0 0.37804 1 40626 40626 13.508 0 1 511000 72480 10778 48433 49485 84354 84354 0.06612126217100922 VPVSFPLFL 9 Unmodified _VPVSFPLFL_ 0 0 0 nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3 nc|ENSG00000167483|Q86XR2-5|NIBAN3 nc|ENSG00000167483|Q86XR2-5|NIBAN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.8025817871094 2 509.802229 1017.5899 -0.082849 -4.2236E-05 0.24962 0.00012726 0.16678 8.5022E-05 509.8022774320413 51.143 0.37735 50.729 50.479 50.856 -0.41351 31 18 2 0 0 0 0.30562 1 27538 27538 16.942 16.942 1 8277200 72481 7614 48434 49486 84355 84355 0.08181306976428004 VPVSISAFFSL 11 Unmodified _VPVSISAFFSL_ 0 0 0 nc|ENSG00000198728|Q86U70-3|LDB1 nc|ENSG00000198728|Q86U70-3|LDB1 nc|ENSG00000198728|Q86U70-3|LDB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.7650756835938 2 583.826432 1165.63831 0.30764 0.00017961 -1.1767 -0.000687 -0.86907 -0.00050739 584.3272353342874 95.067 0.22586 94.699 94.634 94.86 -0.36814 17 11 2 0 0 0 0.30526 1 52008 52008 2.7352 0 1 234490 72482 16495 48435 49487 84356 84356 0.06211755825665932 VPVSTINHAF 10 Unmodified _VPVSTINHAF_ 0 0 0 ENST00000522955.5_1_8:38663104-38684943:+|nuORF;nc|ENSG00000147526|O75410-3|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1 ENST00000522955.5_1_8:38663104-38684943:+|nuORF ENST00000522955.5_1_8:38663104-38684943:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7944946289062 2 542.792924 1083.57129 NaN NaN NaN NaN NaN NaN NaN 44.828 1 44.512 44.012 45.012 -0.31585 0 0 0 0.02683 1 23926 23926 92.653 56.526 1 72483 5857 48436 49488 84357 84357 0.032851453345756454 VPVSVPASD 9 Unmodified _VPVSVPASD_ 0 0 0 nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 nc|ENSG00000187583|Q494U1-3|PLEKHN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 870.4566650390625 1 870.456724 869.449448 0.28974 0.0002522 -0.628 -0.00054665 -0.33826 -0.00029444 870.4560411313277 48.054 0.40289 48.054 47.81 48.212 0 29 19 2 0 0 0 0.0083087 1 26371 26371 97.075 15.462 1 3042100 72484 9568 48437 49489 84358 84358 0.009501032521939123 VPVSVPII 8 Unmodified _VPVSVPII_ 0 0 0 REV__nc|ENSG00000156030|Q6PJG2|MIDEAS REV__nc|ENSG00000156030|Q6PJG2|MIDEAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.268310546875 2 412.268022 822.521491 NaN NaN NaN NaN NaN NaN NaN 86.996 1 86.493 85.993 86.993 -0.50318 0 0 0 0.97444 1 47594 47594 2.5775 0 1 + 72485 21307 48438 49490 84359 84359 0.10313062396585337 VPVSVVECF 9 Carbamidomethyl (C) _VPVSVVEC(Carbamidomethyl (C))F_ VPVSVVEC(1)F VPVSVVEC(64)F 0 1 0 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 ENSG00000167721|ENST00000301364|TSR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2630004882812 2 518.26261 1034.51067 1.0676 0.00055332 -0.92646 -0.00048015 0.14119 7.3172E-05 518.2623121811544 74.644 0.61819 68.468 68.233 68.851 -6.1757 44 32 2 0 0 0 0.019979 2 48706 48706;48829 63.563 36.633 1 22156000 72486 7662 48439 49491 84360;84361 84360 746 -0.0052070804001687065 VPVSVVGIFSY 11 Unmodified _VPVSVVGIFSY_ 0 0 0 ENSG00000187742|ENST00000375807|SECISBP2;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.825439453125 2 583.826432 1165.63831 2.4177 0.0014115 1.3655 0.00079723 3.7832 0.0022087 583.8254548594665 94.69 0.43497 94.704 94.464 94.899 0.014244 39 16 3 0 0 0 1.3103E-08 1 52567 52567 107.19 74.401 1 4738800 72487 9591 48440 49492 84362 84362 0.062117558256886696 VPVSVVGIFSY 11 Unmodified _VPVSVVGIFSY_ 0 0 0 ENSG00000187742|ENST00000375807|SECISBP2;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 ENSG00000187742|ENST00000375807|SECISBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8274536132812 2 583.826432 1165.63831 1.272 0.00074263 2.0357 0.0011885 3.3077 0.0019311 583.8268159522828 100.14 0.33307 93.962 93.838 94.171 -6.1757 40 20 3 0 0 0 2.9767E-06 1 66867 66867 99.799 67.013 1 45876000 72488 9591 48440 49492 84363 84363 0.062117558256886696 VPVSVVSDSY 10 Unmodified _VPVSVVSDSY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2687377929688 2 526.268947 1050.52334 0.5268 0.00027724 -0.47146 -0.00024811 0.055342 2.9125E-05 526.2686032250233 48.082 0.46063 48.082 47.852 48.313 0 78 22 5 0 0 0 0.0012033 2 26396 26277;26396 112.59 60.325 1 180720000 72489 2369 48441 49493 84364;84365 84365 0.00010026623863268469 VPVSVVSDSY 10 Unmodified _VPVSVVSDSY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1053.731689453125 1 1051.53062 1050.52334 -0.33915 -0.00035663 -0.73654 -0.0007745 -1.0757 -0.0011311 1051.5289422065189 48.08 0.27632 48.08 47.936 48.212 0 28 13 3 0 0 0 0.35903 1 26350 26350 24.021 17.297 1 12586000 72490 2369 48441 49493 84366 84366 0.00010026623863268469 VPVSVVSDSY 10 Unmodified _VPVSVVSDSY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7700805664062 2 526.268947 1050.52334 0.32162 0.00016926 0.35401 0.00018631 0.67563 0.00035556 526.2690616075408 48.443 0.31387 48.072 47.905 48.219 -0.37172 38 15 3 0 0 0 0.013474 2 25951 25951;26060 81.613 43.639 1 14934000 72491 2369 48441 49493 84367;84368 84367 0.00010026623863268469 VPVSVVSDSY 10 Unmodified _VPVSVVSDSY_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000491027.5_1_7:105903822-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2685546875 2 526.268947 1050.52334 0.38417 0.00020217 1.3413 0.0007059 1.7255 0.00090807 526.2694946374922 48.11 0.23808 48.071 47.946 48.184 -0.038647 29 11 3 0 0 0 0.037795 1 25921 25921 64.236 43.783 1 3321900 72492 2369 48441 49493 84369 84369 0.00010026623863268469 VPVTASAIL 9 Unmodified _VPVTASAIL_ 0 0 0 ENST00000420416.1_3_10:14920949-14938948:+|nuORF;ENST00000313519.9_2_10:14920918-14938948:+|nuORF ENST00000420416.1_3_10:14920949-14938948:+|nuORF ENST00000420416.1_3_10:14920949-14938948:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 870.5302734375 1 870.529495 869.522219 -0.27212 -0.00023689 0.96576 0.00084073 0.69364 0.00060383 870.5313925452258 63.532 0.22312 63.046 62.969 63.192 -0.48617 14 9 2 0 0 0 0.12841 1 34652 34652 30.225 0 1 602150 72493 11715 48442 49494 84370 84370 0.08223857045629757 VPVTGWPV 8 Unmodified _VPVTGWPV_ 0 0 0 ENST00000404621.5_1_12:124979887-125020143:-|nuORF ENST00000404621.5_1_12:124979887-125020143:-|nuORF ENST00000404621.5_1_12:124979887-125020143:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 854.478515625 1 854.477066 853.469789 0.36793 0.00031439 1.5576 0.0013309 1.9255 0.0016453 854.478527811433 99.625 0.23251 93.449 93.341 93.574 -6.1757 25 14 2 0 0 0 0.46494 1 66368 66368 38.151 6.0342 1 28814000 72494 12917 48443 49495 84371 84371 0.037193187026559826 VPVTLIGEAVF 11 Unmodified _VPVTLIGEAVF_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.8350219726562 2 572.834257 1143.65396 NaN NaN NaN NaN NaN NaN NaN 94.667 1 94.667 94.167 95.167 0 0 0 0 0.93933 1 52329 52329 2.9952 1.5133 1 72495 5436 48444 49496 84372 84372 0.0878804234268955 VPVTLIGEAVF 11 Unmodified _VPVTLIGEAVF_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.8345947265625 2 572.834257 1143.65396 0.5467 0.00031317 0.6025 0.00034514 1.1492 0.0006583 572.8345179464956 95.146 0.49649 94.778 94.541 95.038 -0.36814 74 24 4 0 0 0 0.0052184 2 51989 51893;51989 74.929 45.847 1 8168200 72496 5436 48444 49496 84373;84374 84374 0.0878804234268955 VPVTLIGEAVF 11 Unmodified _VPVTLIGEAVF_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8352661132812 2 572.834257 1143.65396 2.0216 0.001158 0.16943 9.7057E-05 2.191 0.0012551 572.8343847448338 94.664 0.4086 94.679 94.516 94.924 0.014244 39 15 3 0 0 0 0.00081493 2 52574 52574;52675 85.272 56.19 1 7781400 72497 5436 48444 49496 84375;84376 84375 0.0878804234268955 VPVTLIGEAVF 11 Unmodified _VPVTLIGEAVF_ 0 0 0 ENSG00000142657|ENST00000270776|PGD;nc|ENSG00000142657|P52209-2|PGD ENSG00000142657|ENST00000270776|PGD ENSG00000142657|ENST00000270776|PGD MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.83642578125 2 572.834257 1143.65396 1.3444 0.00077009 0.09963 5.7071E-05 1.444 0.00082716 572.8342958884382 100.2 0.22855 94.023 93.912 94.141 -6.1757 37 13 4 0 0 0 0.00081493 1 66907 66907 85.272 26.593 1 292550000 72498 5436 48444 49496 84377 84377 0.0878804234268955 VPVVGASQ 8 Unmodified _VPVVGASQ_ 0 0 0 ENST00000585465.2_2_19:1226346-1226643:+|nuORF ENST00000585465.2_2_19:1226346-1226643:+|nuORF ENST00000585465.2_2_19:1226346-1226643:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.7174987792969 2 378.716153 755.417754 NaN NaN NaN NaN NaN NaN NaN 34.272 1 34.08 33.58 34.58 -0.19131 0 0 0 0.97444 1 17893 17893 2.8892 0 1 72499 15608 48445 49497 84378 84378 0.03026155288910104 VPVVIADSY 9 Unmodified _VPVVIADSY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000531161.5_1_11:44146432-44228372:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 962.5181274414062 1 962.519325 961.512048 0.38846 0.0003739 -0.16317 -0.00015705 0.22529 0.00021685 962.5190377123394 57.073 0.25489 57.073 56.922 57.177 0 24 10 3 0 0 0 0.078417 2 31706 31706;31809 38.151 30.241 1 2117200 72500 6106 48446 49498 84379;84380 84379 0.029752493203773156 VPVVIADSY 9 Unmodified _VPVVIADSY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000531161.5_1_11:44146432-44228372:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.76416015625 2 481.7633 961.512048 0.68319 0.00032913 0.263 0.0001267 0.94618 0.00045584 481.76324903309757 65.161 0.33676 58.985 58.847 59.184 -6.1757 27 18 2 0 0 0 0.012158 1 42282 42282 74.396 36.245 1 9925100 72501 6106 48446 49498 84381 84381 0.029752493203773156 VPVVLVGN 8 Unmodified _VPVVLVGN_ 0 0 0 ENSG00000167550|ENST00000301068|RHEBL1;ENST00000550797.1_1_12:49458888-49462935:-|nuORF ENSG00000167550|ENST00000301068|RHEBL1 ENSG00000167550|ENST00000301068|RHEBL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.75146484375 2 398.749996 795.485439 NaN NaN NaN NaN NaN NaN NaN 29.425 1 29.425 28.925 29.925 0 0 0 0 0.97444 1 15239 15239 0.79363 0 1 72502 7629 48447 49499 84382 84382 0.07951605219727753 VPVVVCREK 9 Unmodified _VPVVVCREK_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2717895507812 2 514.799694 1027.58484 0.35856 0.00018458 3.7198 0.001915 4.0784 0.0020995 515.3030600996093 36.043 0.23005 36.043 35.937 36.167 0 17 11 2 0 0 0 0.18882 1 19133 19133 15.847 0 1 3880000 72503 1361 48448 49500 84383 84383 0.07214679842149962 VPVVVCREK 9 Unmodified _VPVVVCREK_ 0 0 0 nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 nc|ENSG00000083223|Q5VYS8-6|TUT7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 514.799694 1027.58484 0.011306 5.8202E-06 5.5225 0.002843 5.5338 0.0028488 514.8023396753423 36.107 0.21844 36.132 36.012 36.23 0.024967 0.044315 0.0012913 NaN 15.847 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1162800 72504 1361 48448 49500 0.07214679842149962 VPVVVIDSY 9 Unmodified _VPVVVIDSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;ENST00000530851.6_1_11:111680495-111728441:-|nuORF ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.5511474609375 1 990.550625 989.543348 3.5812E-05 3.5474E-08 0.11942 0.00011829 0.11945 0.00011832 990.5504799582201 65.781 0.32098 65.781 65.597 65.918 0 35 15 3 0 0 0 0.03327 3 36732 36624;36719;36732 53.576 44.228 1 5067600 72505 1446 48449 49501 84384;84385;84386 84386 0.0481582235447604 VPVVVIDSY 9 Unmodified _VPVVVIDSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;ENST00000530851.6_1_11:111680495-111728441:-|nuORF ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2591857910156 2 495.778951 989.543348 0.19897 9.8646E-05 -0.29656 -0.00014703 -0.097584 -4.838E-05 495.77875137441043 65.78 0.34099 65.78 65.597 65.938 0 26 16 2 0 0 0 0.16776 1 36631 36631 26.341 12.833 1 4645700 72506 1446 48449 49501 84387 84387 0.0481582235447604 VPVVVIDSY 9 Unmodified _VPVVVIDSY_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9;ENST00000530851.6_1_11:111680495-111728441:-|nuORF ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 991.5535888671875 1 990.550625 989.543348 0.040296 3.9915E-05 0.69031 0.00068379 0.73061 0.00072371 990.5518279758819 66.296 0.17174 65.813 65.774 65.946 -0.48323 13 8 2 0 0 0 0.25297 1 36219 36219 19.439 13.679 1 1721600 72507 1446 48449 49501 84388 84388 0.0481582235447604 VPVVYSTAY 9 Unmodified _VPVVYSTAY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 998.5194702148438 1 998.519325 997.512048 0.066649 6.655E-05 0.79339 0.00079221 0.86004 0.00085876 998.5191273847838 50.137 0.16064 50.137 50.075 50.236 0 11 7 2 0 0 0 0.22317 1 27630 27630 20.871 11.524 1 940940 72508 7904 48450 49502 84389 84389 0.013192493203860067 VPVVYSTAY 9 Unmodified _VPVVYSTAY_ 0 0 0 ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN ENSG00000169710|ENST00000306749|FASN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 998.517822265625 1 998.519325 997.512048 0.60591 0.00060502 2.8469 0.0028427 3.4528 0.0034477 998.5212583111677 50.721 0.22314 50.308 50.192 50.415 -0.41351 13 10 2 0 0 0 0.3554 1 27320 27320 14.582 5.2343 1 1216800 72509 7904 48450 49502 84390 84390 0.013192493203860067 VPVWIIHYY 9 Unmodified _VPVWIIHYY_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3241577148438 2 595.32386 1188.63317 0.15673 9.3303E-05 0.42575 0.00025346 0.58248 0.00034676 595.3239063231968 79.267 0.56831 79.322 79.13 79.698 0.05497 39 21 3 0 0 0 0.01018 1 43733 43733 79.935 61.8 1 47462000 72510 7315 48451 49503 84391 84391 0.04639496753725325 VPVWIIHYY 9 Unmodified _VPVWIIHYY_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3240356445312 2 595.32386 1188.63317 1.0066 0.00059928 -0.28144 -0.00016755 0.7252 0.00043173 595.3235653066149 95.775 0.48203 89.599 89.351 89.833 -6.1757 92 29 4 0 0 0 0.01018 3 63455 63336;63455;63582 79.935 65.353 1 173040000 72511 7315 48451 49503 84392;84393;84394 84393 0.04639496753725325 VPVWLACLI 9 Unmodified _VPVWLACLI_ 0 0 0 ENST00000356956.5_2_6:160527199-160527481:+|nuORF ENST00000356956.5_2_6:160527199-160527481:+|nuORF ENST00000356956.5_2_6:160527199-160527481:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2965087890625 2 507.296256 1012.57796 0.1024 5.1945E-05 -0.085981 -4.3618E-05 0.016414 8.3266E-06 507.29619836749333 23.684 0.50928 20.857 20.632 21.142 -2.8273 89 30 4 0 0 0 0.22317 1 12769 12769 20.871 20.871 1 52179000 72512 12103 48452 49504 84395 84395 0.07217366961583593 VPVWPVPSL 9 Unmodified _VPVWPVPSL_ 0 0 0 ENST00000493195.5_1_1:159898873-159900045:-|nuORF ENST00000493195.5_1_1:159898873-159900045:-|nuORF ENST00000493195.5_1_1:159898873-159900045:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 497.2911071777344 2 497.292028 992.569503 NaN NaN NaN NaN NaN NaN NaN 49.985 1 44.446 43.946 44.946 -5.5391 0 0 0 0.060495 1 31292 31292 53.576 2.1603 1 72513 14309 48453 49505 84396 84396 0.0729213631661878 VPVYILLDEM 10 Oxidation (M) _VPVYILLDEM(Oxidation (M))_ VPVYILLDEM(1) VPVYILLDEM(44) 0 0 1 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.3181762695312 2 604.317583 1206.62061 0.56323 0.00034037 -0.42013 -0.00025389 0.1431 8.6476E-05 604.317642388056 82.656 0.46375 82.158 81.917 82.38 -0.49751 43 19 3 0 0 0 0.1131 1 45280 45280 44.407 26.272 1 2227300 72514 8934 48454 49506 84397 84397 1505 0.025566725085127473 VPVYILLDEM 10 Oxidation (M) _VPVYILLDEM(Oxidation (M))_ VPVYILLDEM(1) VPVYILLDEM(67) 0 0 1 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3178100585938 2 604.317583 1206.62061 0.60972 0.00036847 -0.66843 -0.00040395 -0.058708 -3.5478E-05 604.317168695674 89.723 0.60596 83.548 83.362 83.968 -6.1757 47 33 2 0 0 0 0.031389 2 59214 59214;59351 67.344 38.857 1 8414600 72515 8934 48454 49506 84398;84399 84398 1505 0.025566725085127473 VPVYILLDEM 10 Unmodified _VPVYILLDEM_ 0 0 0 ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H ENSG00000180921|ENST00000388913|FAM83H MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.3204345703125 2 596.320125 1190.6257 1.2359 0.00073697 0.78434 0.00046772 2.0202 0.0012047 596.3201257133269 100.89 0.11299 94.71 94.651 94.764 -6.1757 17 6 3 0 0 0 0.060508 1 67573 67573 77.984 31.963 1 79313000 72516 8934 48454 49507 84400 84400 0.03800976371121578 VPVYIVPP 8 Unmodified _VPVYIVPP_ 0 0 0 REV__nc|ENSG00000080854|Q9UPX0|IGSF9B REV__nc|ENSG00000080854|Q9UPX0|IGSF9B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.269287109375 2 442.268022 882.521491 NaN NaN NaN NaN NaN NaN NaN 36.132 1 36.157 35.657 36.657 0.024967 0 0 0 0.9706 1 19131 19131 6.3541 0 1 + 72517 17677 48455 49508 84401 84401 0.07553062396573296 VPWEELHNRF 10 Unmodified _VPWEELHNRF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.8916625976562 3 442.891166 1325.65167 0.53325 0.00023617 0.022912 1.0148E-05 0.55616 0.00024632 442.891153733431 50.822 0.29881 50.408 50.258 50.557 -0.41351 32 14 3 0 0 0 0.060508 1 27361 27361 48.073 38.309 1 4781900 72518 9123 48456 49509 84402 84402 0.0018700665759752155 VPWEELHNRF 10 Unmodified _VPWEELHNRF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2259826660156 3 442.891166 1325.65167 1.3069 0.00057883 -0.42967 -0.0001903 0.87726 0.00038853 442.8909473213325 50.539 0.26327 50.485 50.325 50.589 -0.053871 39 12 4 0 0 0 0.022967 1 27295 27295 70.929 46.047 1 7390700 72519 9123 48456 49509 84403 84403 0.0018700665759752155 VPWEELHNRF 10 Unmodified _VPWEELHNRF_ 0 0 0 ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF ENSG00000183161|ENST00000327470|FANCF MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.8909606933594 3 442.891166 1325.65167 1.0406 0.00046088 -0.44624 -0.00019764 0.59437 0.00026324 442.89116018661366 55.705 0.33486 49.784 49.587 49.921 -5.9211 39 19 3 0 0 0 0.038363 1 35452 35452 55.249 41.73 1 16658000 72520 9123 48456 49509 84404 84404 0.0018700665759752155 VPWGSGFH 8 Unmodified _VPWGSGFH_ 0 0 0 REV__nc|ENSG00000274150|A8MWK0|FADS2B REV__nc|ENSG00000274150|A8MWK0|FADS2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7148132324219 2 443.713945 885.413337 NaN NaN NaN NaN NaN NaN NaN 30.994 1 30.891 30.391 31.391 -0.10269 0 0 0 0.93066 1 16098 16098 14.582 0 1 + 72521 30003 48457 49510 84405 84405 -0.03395309134009494 VPWGYSAQ 8 Unmodified _VPWGYSAQ_ 0 0 0 ENST00000562482.1_1_16:1364025-1364539:+|nuORF ENST00000562482.1_1_16:1364025-1364539:+|nuORF ENST00000562482.1_1_16:1364025-1364539:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.21923828125 2 454.21906 906.423567 0.74879 0.00034012 -0.62832 -0.0002854 0.12047 5.4719E-05 454.21881415999985 57.54 0.33517 57.54 57.419 57.754 0 24 16 2 0 0 0 0.5284 1 32020 32020 32.117 7.4431 1 3517400 72522 15342 48458 49511 84406 84406 -0.03338746199426623 VPWHCPLL 8 Unmodified _VPWHCPLL_ 0 0 0 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 ENSG00000140832|ENST00000268485|MARVELD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7581481933594 2 482.757298 963.500044 -0.31365 -0.00015142 1.1469 0.00055366 0.83323 0.00040225 482.7584796685598 26.35 0.19915 26.35 26.208 26.407 0 11 9 2 0 0 0 0.80044 1 13565 13565 6.3541 0 1 470510 72523 5273 48459 49512 84407 84407 0.016833540961897597 VPWHEEVVQF 10 Unmodified _VPWHEEVVQF_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.3178100585938 2 635.316763 1268.61897 0.085722 5.4461E-05 0.44955 0.00028561 0.53528 0.00034007 635.8182922779606 63.071 0.32505 63.071 62.87 63.195 0 36 13 4 0 0 0 0.085354 2 35149 35149;35249 49.933 27.197 1 6418300 72524 10181 48460 49513 84408;84409 84408 -0.004592004652522519 VPWHEEVVQF 10 Unmodified _VPWHEEVVQF_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3167114257812 2 635.316763 1268.61897 0.025216 1.602E-05 2.2775 0.0014469 2.3027 0.001463 635.3169331205642 63.62 0.34728 63.134 62.927 63.274 -0.48617 65 15 5 0 0 0 0.022967 2 34739 34637;34739 72.968 27.268 1 28214000 72525 10181 48460 49513 84410;84411 84411 -0.004592004652522519 VPWHEEVVQF 10 Unmodified _VPWHEEVVQF_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3172607421875 2 635.316763 1268.61897 0.8945 0.00056829 -0.088854 -5.645E-05 0.80564 0.00051184 635.316689391836 71.864 0.75887 65.689 65.345 66.104 -6.1757 73 40 3 0 0 0 0.0015761 2 47000 46854;47000 110.67 41.57 1 40094000 72526 10181 48460 49513 84412;84413 84413 -0.004592004652522519 VPWHEEVVQF 10 Unmodified _VPWHEEVVQF_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.3162841796875 2 635.316763 1268.61897 0.69062 0.00043876 0.25061 0.00015921 0.94123 0.00059798 635.3169462556617 72.935 1.3217 66.76 65.941 67.263 -6.1757 105 66 2 0 0 0 0.0022539 6 47648 47284;47412;47531;47648;47765;47929 107.19 49.004 1 42451000 72527 10181 48460 49513 84414;84415;84416;84417;84418;84419 84417 -0.004592004652522519 VPWHEEVVQF 10 Unmodified _VPWHEEVVQF_ 0 0 0 ENSG00000198874|ENST00000359626|TYW1;nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B ENSG00000198874|ENST00000359626|TYW1 ENSG00000198874|ENST00000359626|TYW1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 635.316763 1268.61897 0.30303 0.00019252 1.783 0.0011328 2.086 0.0013253 635.3171274909972 63.134 0.2134 63.113 63.008 63.222 -0.021614 0.0068381 0.0013798 NaN 72.968 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4546600 72528 10181 48460 49513 -0.004592004652522519 VPWLSSVRY 9 Unmodified _VPWLSSVRY_ 0 0 0 ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8037109375 2 553.803291 1105.59203 1.0075 0.00055795 -1.4636 -0.00081056 -0.45612 -0.0002526 553.8023278603083 64.285 0.43413 64.274 64.017 64.451 -0.010529 59 21 4 0 0 0 0.020973 2 35121 35121;35225 62.573 30.267 1 32339000 72529 2538 48461 49514 84420;84421 84420 0.043457357142415276 VPWLSSVRY 9 Unmodified _VPWLSSVRY_ 0 0 0 ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8051147460938 2 553.803291 1105.59203 1.1396 0.0006311 -0.045084 -2.4968E-05 1.0945 0.00060614 553.8034096854499 71.727 0.30903 65.551 65.367 65.676 -6.1757 24 16 2 0 0 0 0.032796 1 46872 46872 53.833 13.883 1 25100000 72530 2538 48461 49514 84422 84422 0.043457357142415276 VPWLSSVRY 9 Unmodified _VPWLSSVRY_ 0 0 0 ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8031616210938 2 553.803291 1105.59203 0.97846 0.00054187 -0.46127 -0.00025545 0.51719 0.00028642 553.8028509704164 72.126 1.1163 65.951 65.656 66.772 -6.1757 94 58 2 0 0 0 0.0086722 4 47206 47206;47315;47439;47562 88.954 48.997 1 30611000 72531 2538 48461 49514 84423;84424;84425;84426 84423 0.043457357142415276 VPWLSSVRY 9 Unmodified _VPWLSSVRY_ 0 0 0 ENSG00000107968|ENST00000263056|MAP3K8;nc|ENSG00000107968|P41279-2|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 ENSG00000107968|ENST00000263056|MAP3K8 MSMS AL20221201_MKP_PDAC_01 4 553.8016967773438 2 553.803291 1105.59203 NaN NaN NaN NaN NaN NaN NaN 73.036 1 66.86 66.36 67.36 -6.1757 0 0 0 0.019743 1 47769 47769 78.728 46.423 1 72532 2538 48461 49514 84427 84427 0.043457357142415276 VPWNLCRDE 9 Unmodified _VPWNLCRDE_ 0 0 0 ENST00000577700.5_1_7:45022904-45023475:-|nuORF ENST00000577700.5_1_7:45022904-45023475:-|nuORF ENST00000577700.5_1_7:45022904-45023475:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8457641601562 3 377.846569 1130.51788 -0.78815 -0.0002978 -1.125 -0.00042508 -1.9131 -0.00072287 377.84602469450795 30.229 0.20408 30.229 30.139 30.343 0 16 9 3 0 0 0 0.58466 1 15717 15717 1.1933 0 1 1156800 72533 15533 48462 49515 84428 84428 -0.04215975439592512 VPWNLCRDE 9 Unmodified _VPWNLCRDE_ 0 0 0 ENST00000577700.5_1_7:45022904-45023475:-|nuORF ENST00000577700.5_1_7:45022904-45023475:-|nuORF ENST00000577700.5_1_7:45022904-45023475:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 377.846569 1130.51788 0.63639 0.00024046 -1.9255 -0.00072754 -1.2891 -0.00048708 377.8458472673795 30.26 0.17313 30.18 30.082 30.255 -0.080429 -0.02429 -0.0002752 NaN 1.1933 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1495500 72534 15533 48462 49515 -0.04215975439592512 VPWSYQAF 8 Unmodified _VPWSYQAF_ 0 0 0 ENST00000492403.1_1_7:100403981-100405169:-|nuORF ENST00000492403.1_1_7:100403981-100405169:-|nuORF ENST00000492403.1_1_7:100403981-100405169:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2414855957031 2 499.242535 996.470518 -0.35107 -0.00017527 -0.047291 -2.361E-05 -0.39836 -0.00019888 499.2425676182432 16.397 0.27759 16.397 16.257 16.535 0 129 74 2 0 0 0 0.71527 1 8027 8027 15.847 0 1 1338800 72535 14292 48463 49516 84429 84429 -0.0278588664829158 VPWTELLSL 9 Unmodified _VPWTELLSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.30078125 2 529.30005 1056.58555 0.42413 0.00022449 1.4708 0.00077847 1.8949 0.001003 529.301129608406 100.82 0.13045 100.77 100.71 100.84 -0.04216 7 4 2 0 0 0 0.023164 1 56010 56010 60.39 18.295 1 5880000 72536 2059 48464 49517 84430 84430 0.05951797762872957 VPWTELLSL 9 Unmodified _VPWTELLSL_ 0 0 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2991333007812 2 529.30005 1056.58555 0.87721 0.00046431 -0.35118 -0.00018588 0.52603 0.00027843 529.2997558184621 101.46 0.13753 95.285 95.192 95.33 -6.1757 12 6 2 0 0 0 0.0094915 1 68074 68074 81.864 31.009 1 78237000 72537 2059 48464 49517 84431 84431 0.05951797762872957 VPWTGYQG 8 Unmodified _VPWTGYQG_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 907.430908203125 1 907.430844 906.423567 -0.18131 -0.00016452 0.83431 0.00075708 0.65301 0.00059256 907.431408800887 58.168 0.1408 57.678 57.619 57.76 -0.48974 10 6 2 0 0 0 0.63229 1 31630 31630 23.148 0 1 1079400 72538 10070 48465 49518 84432 84432 -0.03338746199426623 VPWYWSTL 8 Unmodified _VPWYWSTL_ 0 0 0 REV__ENST00000562888.1_1_16:74330432-74330609:-|nuORF REV__ENST00000562888.1_1_16:74330432-74330609:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.8077392578125 2 526.26601 1050.51747 0.90688 0.00047726 -2.6615 -0.0014007 -1.7547 -0.00092342 526.7640742080638 101.44 0.25063 95.262 95.211 95.461 -6.1757 14 12 2 0 0 0 8.7369 1 68048 68048 20.871 0.41758 1 12645000 + 72539 28862 48466 49519 84433 84433 -0.005770270971424907 VPYDEDIRWF 10 Unmodified _VPYDEDIRWF_ 0 0 0 REV__nc|ENSG00000109046|Q9Y6I7-4|WSB1 REV__nc|ENSG00000109046|Q9Y6I7-4|WSB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.3198852539062 2 670.319502 1338.62445 1.1591 0.00077698 -0.59094 -0.00039612 0.56817 0.00038086 670.3198515590205 62.384 0.85492 56.208 56.002 56.857 -6.1757 102 44 4 0 0 0 0.49559 1 40275 40275 25.399 2.663 1 39308000 + 72540 18640 48467 49520 84434 84434 -0.03131521673458337 VPYEKGFAL 9 Unmodified _VPYEKGFAL_ 0 0 0 nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF nc|ENSG00000111144|P09960-3|LTA4H nc|ENSG00000111144|P09960-3|LTA4H MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7501831054688 2 512.279118 1022.54368 0.45288 0.000232 1.8275 0.00093619 2.2804 0.0011682 512.280004467671 52.878 0.3516 52.878 52.728 53.08 0 25 16 2 0 0 0 0.16895 1 29301 29301 18.146 7.3224 1 2872000 72541 2763 48468 49521 84435 84435 0.03331242074330021 VPYEKGFAL 9 Unmodified _VPYEKGFAL_ 0 0 0 nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000548375.5_1_12:96405582-96408866:-|nuORF;ENST00000548852.5_1_12:96397735-96429337:-|nuORF nc|ENSG00000111144|P09960-3|LTA4H nc|ENSG00000111144|P09960-3|LTA4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.279052734375 2 512.279118 1022.54368 0.28613 0.00014658 0.71125 0.00036436 0.99738 0.00051094 512.279228552362 53.38 0.34539 52.928 52.783 53.128 -0.45173 40 16 4 0 0 0 0.12424 2 28850 28850;28952 30.637 6.616 1 6986300 72542 2763 48468 49521 84436;84437 84436 0.03331242074330021 VPYEPDSVVM 10 Unmodified _VPYEPDSVVM_ 0 0 0 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-6|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;ENST00000587765.1_1_19:38282860-38283352:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2703247070312 2 568.270632 1134.52671 0.23939 0.00013604 0.78001 0.00044326 1.0194 0.00057929 568.2709094556428 56.611 0.29654 56.611 56.45 56.746 0 23 12 3 0 0 0 0.14917 1 31465 31465 39.957 7.6518 1 2733600 72543 9022;15094 48469 49522 84438 84438 -0.03517046593788109 VPYEPDSVVM 10 Oxidation (M) _VPYEPDSVVM(Oxidation (M))_ VPYEPDSVVM(1) VPYEPDSVVM(71) 0 0 1 nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;nc|ENSG00000182149|P53990-3|IST1;nc|ENSG00000182149|P53990-6|IST1;ENST00000545388.2_1_16:71955203-71956613:+|nuORF;ENST00000587765.1_1_19:38282860-38283352:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1;ENST00000545518.1_1_16:71950471-71955437:+|nuORF nc|ENSG00000182149|P53990-2|IST1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2693481445312 2 576.26809 1150.52163 0.72226 0.00041622 0.091224 5.2569E-05 0.81349 0.00046879 576.2683831677149 51.547 0.33627 45.898 45.753 46.09 -5.649 43 20 3 0 0 0 0.024981 1 32544 32544 71.134 25.113 1 73581000 72544 9022;15094 48469 49523 84439 84439 1512;1778 -0.047613504564196774 VPYFNCLL 8 Unmodified _VPYFNCLL_ 0 0 0 REV__ENST00000251527.9_1_7:158525686-158525794:-|nuORF REV__ENST00000251527.9_1_7:158525686-158525794:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2167663574219 2 484.749139 967.483725 0.67183 0.00032567 0.72896 0.00035336 1.4008 0.00067903 484.7498735188883 49.719 0.3726 49.719 49.487 49.859 0 34 16 3 0 0 0 8.7369 1 27272 27272 2.8892 0 1 5389300 + 72545 24887 48470 49524 84440 84440 -0.001317718605491791 VPYFSFMTY 9 Unmodified _VPYFSFMTY_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.767333984375 2 577.764986 1153.51542 NaN NaN NaN NaN NaN NaN NaN 49.678 1 49.678 49.178 50.178 0 0 0 0 0.7243 1 27353 27353 8.5933 1.304 1 72546 3126 48471 49525 84441 84441 -0.055198238972479885 VPYGASPPSL 10 Unmodified _VPYGASPPSL_ 0 0 0 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 ENSG00000083290|ENST00000395544|ULK2 MSMS AL20221201_MKP_PDAC_01 4 494.2634582519531 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 44.081 1 39.316 38.816 39.816 -4.7648 0 0 0 0.016955 1 26864 26864 74.929 8.4723 1 72547 1362 48472 49526 84442 84442 0.01350365177609092 VPYGKGPSF 9 Unmodified _VPYGKGPSF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.2502136230469 2 476.25036 950.486168 -0.28927 -0.00013776 0.86609 0.00041248 0.57683 0.00027471 476.25028117777987 36.641 0.29902 36.391 36.232 36.531 -0.2497 28 13 3 0 0 0 0.020973 1 19215 19215 62.573 24.599 1 6546800 72548 3315 48473 49527 84443 84443 0.00894399868752771 VPYGKGPSF 9 Unmodified _VPYGKGPSF_ 0 0 0 nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C;nc|ENSG00000117523|Q9Y520-2|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C nc|ENSG00000117523|Q9Y520-3|PRRC2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.2501831054688 2 476.25036 950.486168 0.97175 0.0004628 -0.53902 -0.00025671 0.43274 0.00020609 476.25002823969487 41.085 0.44212 36.477 36.244 36.686 -4.6079 50 27 2 0 0 0 0.017075 2 24661 24525;24661 66.457 20.478 1 20386000 72549 3315 48473 49527 84444;84445 84445 0.00894399868752771 VPYHKRLFS 9 Unmodified _VPYHKRLFS_ 0 0 0 ENST00000409381.5_1_2:150327519-150327687:+|nuORF ENST00000409381.5_1_2:150327519-150327687:+|nuORF ENST00000409381.5_1_2:150327519-150327687:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3057861328125 2 573.824558 1145.63456 0.63086 0.000362 -1.3721 -0.00078732 -0.74119 -0.00042531 573.8242206928115 87.462 0.47855 86.958 86.855 87.334 -0.50423 28 21 2 0 0 0 0.21889 1 47937 47937 0.6015 0 1 841300 72550 12960 48474 49528 84446 84446 0.06757130842447623 VPYHYYEPF 9 Unmodified _VPYHYYEPF_ 0 0 0 ENSG00000117069|ENST00000477717|ST6GALNAC5 ENSG00000117069|ENST00000477717|ST6GALNAC5 ENSG00000117069|ENST00000477717|ST6GALNAC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2113647460938 3 405.52208 1213.54441 -0.38648 -0.00015673 -0.40517 -0.0001643 -0.79164 -0.00032103 405.52223418442725 30.908 0.12121 30.908 30.811 30.932 0 6 5 2 0 0 0 0.21767 1 16028 16028 2.9952 0.90923 1 711830 72551 3279 48475 49529 84447 84447 -0.0538196327663627 VPYICTTHI 9 Unmodified _VPYICTTHI_ 0 0 0 REV__nc|ENSG00000135100|P20823-6|HNF1A REV__nc|ENSG00000135100|P20823-6|HNF1A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.2415161132812 2 523.770603 1045.52665 0.86787 0.00045456 0.36498 0.00019117 1.2328 0.00064573 523.7707726051178 67.264 0.4327 61.089 60.89 61.323 -6.1757 32 23 2 0 0 0 0.18118 1 43735 43735 12.532 0 1 13555000 + 72552 29643 48476 49530 84448 84448 0.005709981968720967 VPYIGFGLGH 10 Unmodified _VPYIGFGLGH_ 0 0 0 ENST00000256497.8_1_3:5258688-5258793:+|nuORF ENST00000256497.8_1_3:5258688-5258793:+|nuORF ENST00000256497.8_1_3:5258688-5258793:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.28515625 2 530.284734 1058.55492 0.70506 0.00037388 -0.98611 -0.00052292 -0.28105 -0.00014904 530.2843271091406 18.408 0.41009 15.786 15.604 16.014 -2.6215 62 37 3 0 0 0 0.57332 2 9659 9659;9765 12.532 3.1484 1 2161500 72553 11180 48477 49531 84449;84450 84449 0.02798064168473502 VPYKDEELY 9 Unmodified _VPYKDEELY_ 0 0 0 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 ENSG00000152193|ENST00000282003|OBI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2822875976562 2 578.282054 1154.54956 0.70312 0.0004066 0.026252 1.5181E-05 0.72938 0.00042178 578.2825460168474 36.743 0.29031 36.743 36.588 36.878 0 29 13 3 0 0 0 0.05483 1 19503 19503 43.772 21.036 1 4044300 72554 6167 48478 49532 84451 84451 -0.021537042046475108 VPYKFVTY 8 Unmodified _VPYKFVTY_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.77490234375 2 508.776211 1015.53787 0.56846 0.00028922 -1.2968 -0.00065979 -0.72835 -0.00037057 508.77544357980867 50.314 0.18114 49.921 49.811 49.992 -0.3923 14 8 2 0 0 0 0.46677 1 27094 27094 37.974 23.392 1 2327400 72555 6949 48479 49533 84452 84452 0.03072143562656038 VPYKFVTY 8 Unmodified _VPYKFVTY_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7767333984375 2 508.776211 1015.53787 1.4831 0.00075456 -1.3371 -0.00068028 0.14598 7.4273E-05 508.77519613284204 49.988 0.28127 49.939 49.805 50.087 -0.048828 33 13 3 0 0 0 0.25522 1 27006 27006 61.357 37.337 1 4728300 72556 6949 48479 49533 84453 84453 0.03072143562656038 VPYLFSSS 8 Unmodified _VPYLFSSS_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.4492797851562 1 899.450911 898.443634 0.05229 4.7032E-05 -0.82814 -0.00074487 -0.77585 -0.00069784 899.4504895900776 80.663 0.30727 80.663 80.472 80.779 0 17 14 2 0 0 0 0.72953 1 44757 44757 14.582 0 1 564550 + 72557 23672 48480 49534 84454 84454 -0.009649952594713795 VPYLRDLGL 9 Unmodified _VPYLRDLGL_ 0 0 0 nc|ENSG00000160179|P45844-8|ABCG1;UBE2G2-ABCG1|3|fusion;UBE2G2-ABCG1|4|fusion;UBE2G2-ABCG1|1|fusion;UBE2G2-ABCG1|2|fusion;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;ENST00000467818.1_1_21:43696971-43706199:+|nuORF nc|ENSG00000160179|P45844-8|ABCG1 nc|ENSG00000160179|P45844-8|ABCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3047485351562 2 523.305667 1044.59678 0.98916 0.00051763 -3.8837 -0.0020323 -2.8945 -0.0015147 523.3040129496793 71.228 0.55421 71.267 71.024 71.579 0.039024 42 24 2 0 0 0 0.15471 1 39160 39160 27.629 11.782 1 1840900 72558 16314 48481 49535 84455 84455 0.07626619856978323 VPYNSQRPLSQ 11 Unmodified _VPYNSQRPLSQ_ 0 0 0 REV__ENSG00000047346|ENST00000619572|ATOSA REV__ENSG00000047346|ENST00000619572|ATOSA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.580078125 3 430.226326 1287.65715 0.88219 0.00037954 2.2429 0.00096494 3.125 0.0013445 430.2268439807745 50.691 0.098671 50.638 50.55 50.648 -0.053871 6 4 2 0 0 0 0.3021 1 27409 27409 6.6235 0 1 852990 + 72559 17224 48482 49536 84456 84456 0.02482685449422206 VPYPDDLVGF 10 Unmodified _VPYPDDLVGF_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2798461914062 2 561.279315 1120.54408 0.35195 0.00019754 0.38086 0.00021377 0.7328 0.00041131 561.2796056318715 80.656 0.69067 80.656 80.43 81.121 0 116 32 5 0 0 0 0.13184 2 44730 44730;44827 42.095 27.256 1 10988000 72560 10272 48483 49537 84457;84458 84457 -0.011373829964895776 VPYPDDLVGF 10 Unmodified _VPYPDDLVGF_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.27978515625 2 561.279315 1120.54408 1.2226 0.0006862 -0.81923 -0.00045982 0.40333 0.00022638 561.2789517138008 88.781 0.59357 82.606 82.221 82.815 -6.1757 114 32 4 0 0 0 0.063761 2 58507 58507;58626 54.774 35.517 1 90385000 72561 10272 48483 49537 84459;84460 84459 -0.011373829964895776 VPYPDDLVGF 10 Unmodified _VPYPDDLVGF_ 0 0 0 ENSG00000204351|ENST00000375394|SKIC2;ENST00000484835.1_1_6:31934891-31936687:+|nuORF;ENST00000494058.5_1_6:31934804-31935971:+|nuORF;ENST00000461915.5_1_6:31934795-31936203:+|nuORF ENSG00000204351|ENST00000375394|SKIC2 ENSG00000204351|ENST00000375394|SKIC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.2789916992188 2 561.279315 1120.54408 1.328 0.00074539 3.5925 0.0020164 4.9205 0.0027618 561.2805323611445 88.985 0.067535 82.81 82.779 82.846 -6.1757 8 3 3 0 0 0 0.2178 1 58750 58750 32.305 13.049 1 25425000 72562 10272 48483 49537 84461 84461 -0.011373829964895776 VPYPDLLHLY 10 Unmodified _VPYPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.3328247070312 2 615.331882 1228.64921 0.64901 0.00039935 -0.18232 -0.00011219 0.46669 0.00028717 615.3321636632365 83.923 0.33319 83.423 83.217 83.55 -0.49961 31 13 3 0 0 0 0.1028 1 45902 45902 46.021 32.978 1 1293900 72563 2012 48484 49538 84462 84462 0.04403158199943391 VPYPDLLHLY 10 Unmodified _VPYPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.834228515625 2 615.331882 1228.64921 1.2235 0.00075288 0.35949 0.00022121 1.583 0.00097409 615.3323612441699 97.237 0.30899 91.061 90.895 91.203 -6.1757 36 17 3 0 0 0 0.0044003 2 64392 64392;64518 100.37 72.743 1 33867000 72564 2012 48484 49538 84463;84464 84463 0.04403158199943391 VPYPGKKVL 9 Unmodified _VPYPGKKVL_ 0 0 0 ENST00000493775.1_1_20:36030831-36031351:+|nuORF ENST00000493775.1_1_20:36030831-36031351:+|nuORF ENST00000493775.1_1_20:36030831-36031351:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.8106384277344 2 500.813128 999.611703 0.89464 0.00044805 -2.9359 -0.0014704 -2.0413 -0.0010223 500.8118031500236 36.611 0.18276 36.611 36.507 36.69 0 15 8 2 0 0 0 0.28047 1 19433 19433 18.135 0 1 1239900 72565 14322 48485 49539 84465 84465 0.11188111724982264 VPYPNRQP 8 Unmodified _VPYPNRQP_ 0 0 0 REV__ENSG00000196782|ENST00000509479|MAML3 REV__ENSG00000196782|ENST00000509479|MAML3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7567138671875 2 485.758884 969.503215 NaN NaN NaN NaN NaN NaN NaN 19.7 1 19.7 19.2 20.2 0 0 0 0 0.97444 1 9871 9871 2.3027 0.24298 1 + 72566 23869 48486 49540 84466 84466 0.01724320474556862 VPYPRIHFPL 10 Unmodified _VPYPRIHFPL_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000442868.1_1_1:202822165-202825009:-|nuORF nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8 ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.9086608886719 3 413.572998 1237.69716 0.2858 0.0001182 0.67409 0.00027879 0.95989 0.00039699 413.90763563278307 93.165 0.2774 86.989 86.806 87.084 -6.1757 33 19 2 0 0 0 0.40046 1 61705 61705 21.59 5.0243 1 38651000 72567 3708;4027;7630;9198;16164 48487 49541 84467 84467 0.08782276910642395 VPYQERLLAEY 11 Unmodified _VPYQERLLAEY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;ENST00000479540.5_1_20:62201547-62202346:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.86181640625 2 690.861534 1379.70852 -0.64486 -0.00044551 -0.58828 -0.00040642 -1.2331 -0.00085193 690.8610902452023 55.875 0.32485 55.875 55.746 56.071 0 52 19 3 0 0 0 4.5211E-07 2 31010 31010;31126 105.35 65.388 1 35930000 72568 16188 48488 49542 84468;84469 84468 0.033850094235049255 VPYQERLLAEY 11 Unmodified _VPYQERLLAEY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;ENST00000479540.5_1_20:62201547-62202346:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.8624877929688 2 690.861534 1379.70852 -0.87044 -0.00060135 0.029509 2.0387E-05 -0.84093 -0.00058097 690.8614294585511 56.427 0.22721 55.941 55.805 56.032 -0.48554 56 18 4 0 0 0 0.012958 1 30602 30602 64.692 44.238 1 65277000 72569 16188 48488 49542 84470 84470 0.033850094235049255 VPYQERLLAEY 11 Unmodified _VPYQERLLAEY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;ENST00000479540.5_1_20:62201547-62202346:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.86181640625 2 690.861534 1379.70852 -0.30111 -0.00020802 0.43105 0.00029779 0.12994 8.9772E-05 690.8623566225447 56.152 0.13609 56.084 56.019 56.155 -0.068741 12 6 3 0 0 0 0.038129 1 30539 30539 53.47 28.07 1 2710600 72570 16188 48488 49542 84471 84471 0.033850094235049255 VPYQERLLAEY 11 Unmodified _VPYQERLLAEY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;ENST00000479540.5_1_20:62201547-62202346:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.8616333007812 2 690.861534 1379.70852 0.38221 0.00026406 0.41826 0.00028896 0.80048 0.00055302 690.8616889625163 62.081 0.98892 55.906 55.619 56.608 -6.1757 148 53 3 0 0 0 3.6601999999999996E-52 5 40147 39890;40012;40147;40279;40417 193.01 135.54 1 120580000 72571 16188 48488 49542 84472;84473;84474;84475;84476 84474 0.033850094235049255 VPYQERLLAEY 11 Unmodified _VPYQERLLAEY_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;ENST00000370082.1_1_20:62201547-62204491:-|nuORF;ENST00000479540.5_1_20:62201547-62202346:-|nuORF nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.8603515625 2 690.861534 1379.70852 0.94296 0.00065145 0.56514 0.00039043 1.5081 0.0010419 690.86197934365 62.987 0.45625 56.811 56.563 57.019 -6.1757 41 23 2 0 0 0 6.5068E-05 2 40698 40571;40698 93.448 61.143 1 23913000 72572 16188 48488 49542 84477;84478 84478 0.033850094235049255 VPYQYPYAGLY 11 Unmodified _VPYQYPYAGLY_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 667.32666015625 2 667.326796 1332.63904 0.36322 0.00024239 -0.3161 -0.00021094 0.047124 3.1447E-05 667.3265588253248 70.808 0.20268 70.331 70.186 70.389 -0.47735 16 9 2 0 0 0 0.48615 1 38721 38721 17.113 8.3675 1 1334400 72573 16138;16139 48489 49543 84479 84479 -0.013974495253023633 VPYQYPYAGLY 11 Unmodified _VPYQYPYAGLY_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.8287353515625 2 667.326796 1332.63904 0.44583 0.00029752 0.60645 0.0004047 1.0523 0.00070222 667.3269016952927 78.036 0.30543 71.86 71.668 71.973 -6.1757 37 16 3 0 0 0 0.18636 1 51005 51005 32.786 0.4802 1 14151000 72574 16138;16139 48489 49543 84480 84480 -0.013974495253023633 VPYRIFPY 8 Unmodified _VPYRIFPY_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7903442382812 2 527.789653 1053.56475 0.96625 0.00050998 -0.22883 -0.00012077 0.73742 0.0003892 527.7895665190915 64.054 0.39077 64.043 63.803 64.194 -0.010536 47 19 3 0 0 0 0.40035 2 35005 35005;35109 44.407 19.733 1 11289000 72575 5556 48490 49544 84481;84482 84481 0.04011252173859248 VPYRQIESF 9 Unmodified _VPYRQIESF_ 0 0 0 REV__nc|ENSG00000178125|Q7Z4L9|PPP1R42 REV__nc|ENSG00000178125|Q7Z4L9|PPP1R42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.796875 2 569.798206 1137.58186 -0.11835 -6.7435E-05 -0.20576 -0.00011724 -0.32411 -0.00018468 569.7980666000509 55.627 0.30917 55.558 55.395 55.705 -0.068737 26 15 2 0 0 0 0.19361 1 30202 30202 32.305 10.559 1 18351000 + 72576 29811 48491 49545 84483 84483 0.018571279890011283 VPYSCRENY 9 Unmodified _VPYSCRENY_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5033264160156 3 377.502691 1129.48624 0.55185 0.00020832 1.1478 0.0004333 1.6997 0.00064163 377.50302499285254 49.284 0.24926 48.913 48.755 49.005 -0.37172 18 11 2 0 0 0 0.53666 1 26497 26497 2.9952 1.253 1 2566700 72577 8389 48492 49546 84484 84484 -0.07331968193557259 VPYSLIPTAF 10 Unmodified _VPYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.30908203125 2 554.307875 1106.6012 1.891 0.0010482 0.066008 3.6589E-05 1.957 0.0010848 554.30792580118 93.023 0.44727 93.046 92.823 93.27 0.022987 42 17 3 0 0 0 0.021369 2 51769 51672;51769 74.423 40.021 1 6779100 72578 8124;9174 48493 49547 84485;84486 84486 0.0521608427989122 VPYSLIPTAF 10 Unmodified _VPYSLIPTAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000183655|ENST00000337975|KLHL25 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.8079223632812 2 554.307875 1106.6012 0.7878 0.00043668 -0.39242 -0.00021752 0.39538 0.00021916 554.8086957748071 99.948 0.19118 93.772 93.664 93.855 -6.1757 29 13 3 0 0 0 0.31022 1 66664 66664 26.884 7.6267 1 50831000 72579 8124;9174 48493 49547 84487 84487 0.0521608427989122 VPYSRALIM 9 Oxidation (M) _VPYSRALIM(Oxidation (M))_ VPYSRALIM(1) VPYSRALIM(54) 0 0 1 ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.2919311523438 2 533.291702 1064.56885 0.46056 0.00024561 -0.76164 -0.00040618 -0.30108 -0.00016056 533.2913189406603 40.571 0.22544 40.576 40.47 40.695 0.0050583 16 10 2 0 0 0 0.032796 1 21650 21650 53.833 28.433 1 3532200 72580 6091 48494 49548 84488 84488 1083 0.03914973605242267 VPYSRALIM 9 Oxidation (M) _VPYSRALIM(Oxidation (M))_ 0 0 1 ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A ENSG00000151117|ENST00000280734|TMEM86A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.291702 1064.56885 0.3921 0.00020911 -0.74968 -0.0003998 -0.35758 -0.00019069 533.2911609886338 40.876 0.16082 40.573 40.461 40.622 -0.30304 -0.01 -0.00022004 NaN 53.833 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2533300 72581 6091 48494 49548 1083 0.03914973605242267 VPYTINSF 8 Unmodified _VPYTINSF_ 0 0 0 REV__ENST00000246117.8_1_19:3208704-3209124:+|nuORF REV__ENST00000246117.8_1_19:3208704-3209124:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7232971191406 2 470.742368 939.470183 0.020802 9.7923E-06 -0.84721 -0.00039882 -0.82641 -0.00038903 470.74183705726404 56.896 0.31721 56.411 56.226 56.543 -0.48554 22 14 2 0 0 0 8.7369 1 30978 30978 22.453 3.0136 1 1960800 + 72582 24864 48495 49549 84489 84489 -0.001973063681475651 VPYTPTSSSF 10 Unmodified _VPYTPTSSSF_ 0 0 0 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2615356445312 2 543.261122 1084.50769 0.40922 0.00022231 -0.54249 -0.00029471 -0.13327 -7.2402E-05 543.2608129770318 66.639 0.70058 66.639 66.195 66.896 0 58 31 2 0 0 0 0.67033 1 37295 37295 6.2058 0.44535 1 5503700 + 72583 17343 48496 49550 84490 84490 -0.03118259893199138 VPYTPTSSSF 10 Unmodified _VPYTPTSSSF_ 0 0 0 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 REV__nc|ENSG00000063015|Q53EL9-3|SEZ6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2625732421875 2 543.261122 1084.50769 0.22642 0.00012301 3.4963 0.0018994 3.7228 0.0020224 543.2630591218266 67.287 0.22628 66.805 66.737 66.963 -0.48218 10 9 2 0 0 0 0.52888 1 36781 36781 14.838 0.93222 1 605950 + 72584 17343 48496 49550 84491 84491 -0.03118259893199138 VPYTVITPF 9 Unmodified _VPYTVITPF_ 0 0 0 ENSG00000279111|ENST00000623167|OR10X1 ENSG00000279111|ENST00000623167|OR10X1 ENSG00000279111|ENST00000623167|OR10X1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1036.069091796875 1 1036.57136 1035.56408 2.3688 0.0024554 0.84793 0.00087894 3.2167 0.0033344 1036.5734442665237 94.525 0.20741 94.54 94.435 94.643 0.014252 10 7 2 0 0 0 0.11012 1 52503 52503 36.044 5.8194 1 2517800 72585 10940 48497 49551 84492 84492 0.04772412734109821 VPYVDLQVL 9 Unmodified _VPYVDLQVL_ 0 0 0 REV__nc|ENSG00000081913|O60346-2|PHLPP1 REV__nc|ENSG00000081913|O60346-2|PHLPP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.301025390625 2 523.30005 1044.58555 0.4482 0.00023454 1.8683 0.00097768 2.3165 0.0012122 523.3010609185989 71.893 0.4982 71.417 71.073 71.572 -0.47609 36 19 2 0 0 0 0.30202 1 39216 39216 17.113 2.2746 1 3889500 + 72586 17698 48498 49552 84493 84493 0.06503797762843533 VPYVTRERDVM 11 Oxidation (M) _VPYVTRERDVM(Oxidation (M))_ VPYVTRERDVM(1) VPYVTRERDVM(48) 0 0 1 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;ENST00000570136.5_1_16:2611779-2611935:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.9027099609375 3 460.902855 1379.68673 0.095686 4.4102E-05 -0.325 -0.00014979 -0.22931 -0.00010569 460.90277850947433 24.772 0.33565 24.772 24.624 24.959 0 63 23 4 0 0 0 0.063019 1 12728 12728 48.073 22.075 1 9493700 72587 5293;16515 48499 49553 84494 84494 972 0.01207881403229294 VPYVTRERDVM 11 Oxidation (M) _VPYVTRERDVM(Oxidation (M))_ VPYVTRERDVM(1) VPYVTRERDVM(67) 0 0 1 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;ENST00000570136.5_1_16:2611779-2611935:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.903076171875 3 460.902855 1379.68673 0.55723 0.00025683 0.24228 0.00011167 0.7995 0.00036849 460.90310652648566 28.201 0.40354 25.053 24.878 25.282 -3.1482 67 21 5 0 0 0 0.011225 2 15761 15638;15761 66.55 31.47 1 32548000 72588 5293;16515 48499 49553 84495;84496 84496 972 0.01207881403229294 VPYVTRERDVM 11 Unmodified _VPYVTRERDVM_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-5|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;ENST00000491073.5_1_16:2607712-2633730:+|nuORF;ENST00000570136.5_1_16:2611779-2611935:+|nuORF;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1;nc|ENSG00000205918|Q6A1A2|PDPK2P nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.5712280273438 3 455.571216 1363.69182 1.0664 0.0004858 -0.94866 -0.00043218 0.11769 5.3616E-05 455.5708605969468 38.095 0.38401 33.726 33.516 33.9 -4.3689 70 22 4 0 0 0 0.074411 2 22353 22353;22477 45.603 16.321 1 58934000 72589 5293;16515 48499 49554 84497;84498 84497 0.024521852658608623 VQAEGALHNR 10 Unmodified _VQAEGALHNR_ 0 0 0 REV__nc|ENSG00000290757|Q5NE16|CTSL3P REV__nc|ENSG00000290757|Q5NE16|CTSL3P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.5274047851562 3 365.528228 1093.56285 NaN NaN NaN NaN NaN NaN NaN 18.194 1 18.2 17.7 18.7 0.0060463 0 0 0 0.97592 1 9210 9210 1.5923 0 1 + 72590 30033 48500 49555 84499 84499 0.019815914179389438 VQAGQLHY 8 Unmodified _VQAGQLHY_ 0 0 0 REV__ENST00000409555.5_1_7:24911660-24932081:-|nuORF REV__ENST00000409555.5_1_7:24911660-24932081:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.50830078125 2 458.237784 914.461016 NaN NaN NaN NaN NaN NaN NaN 16.347 1 16.347 15.847 16.847 0 0 0 0 0.97444 1 7962 7962 0.79363 0 1 + 72591 26691 48501 49556 84500 84500 0.00036345066166632023 VQALRQFLW 9 Unmodified _VQALRQFLW_ 0 0 0 nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000105443|Q99418|CYTH2;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000008256|O43739|CYTH3;ENSG00000008256|ENST00000350796|CYTH3;ENST00000478541.1_1_7:6210722-6217545:-|nuORF nc|ENSG00000108669|Q15438-3|CYTH1;nc|ENSG00000105443|Q99418|CYTH2;nc|ENSG00000008256|O43739|CYTH3 nc|ENSG00000105443|Q99418|CYTH2 MSMS AL20221201_MKP_PDAC_01 4 580.8336791992188 2 580.832383 1159.65021 NaN NaN NaN NaN NaN NaN NaN 94.248 1 88.072 87.572 88.572 -6.1757 0 0 0 0.053277 1 62422 62422 56.177 32.156 1 72592 2595;2323;380 48502 49557 84501 84501 0.07677417359514038 VQAPAEFVQ 9 Unmodified _VQAPAEFVQ_ 0 0 0 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7588806152344 2 494.758549 987.502546 0.20496 0.00010141 -0.20512 -0.00010149 -0.00016506 -8.1665E-08 494.7584679212821 56.767 0.36494 56.767 56.609 56.974 0 28 15 2 0 0 0 0.23158 1 31643 31643 20.454 4.6064 1 8771100 72593 8427 48503 49558 84502 84502 0.008294810348502324 VQAPAEFVQ 9 Unmodified _VQAPAEFVQ_ 0 0 0 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 ENSG00000174498|ENST00000327987|IGDCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7607727050781 2 494.758549 987.502546 1.4588 0.00072176 1.9903 0.00098472 3.4491 0.0017065 494.7597911823097 64.424 0.41356 58.249 58.036 58.45 -6.1757 35 22 2 0 0 0 0.14 1 41747 41747 29.082 9.8246 1 20049000 72594 8427 48503 49558 84503 84503 0.008294810348502324 VQARVMDRH 9 Unmodified _VQARVMDRH_ 0 0 0 ENSG00000101220|ENST00000379772|ADISSP;nc|ENSG00000101220|Q9GZN8-2|ADISSP ENSG00000101220|ENST00000379772|ADISSP ENSG00000101220|ENST00000379772|ADISSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2946166992188 2 556.293099 1110.57165 1.1963 0.0006655 3.2758 0.0018223 4.4721 0.0024878 556.7961557221779 50.441 0.27449 44.902 44.71 44.985 -5.5391 45 17 3 0 0 0 0.08691 1 31557 31557 36.127 36.127 1 41218000 72595 1935 48504 49559 84504 84504 0.02078241782760415 VQAVKSTV 8 Unmodified _VQAVKSTV_ 0 0 0 nc|ENSG00000189308|Q6MZP7-2|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 nc|ENSG00000189308|Q6MZP7-2|LIN54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2506103515625 2 416.25036 830.486168 -0.7202 -0.00029978 2.1246 0.00088435 1.4044 0.00058456 416.25115342389967 102.58 0.088615 102.53 102.46 102.55 -0.045853 4 2 2 0 0 0 0.80992 1 56983 56983 0.69038 0 1 2433000 72596 16472 48505 49560 84505 84505 0.06414399868765486 VQAYSHYEIF 10 Unmodified _VQAYSHYEIF_ 0 0 0 ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM ENST00000571666.1_1_16:21273345-21289551:-|nuORF ENST00000571666.1_1_16:21273345-21289551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8011474609375 2 628.800946 1255.58734 0.96628 0.0006076 -1.4739 -0.0009268 -0.50764 -0.0003192 628.8000159824402 49.601 0.27203 49.552 49.431 49.703 -0.048828 27 13 3 0 0 0 0.52888 1 26792 26792 14.838 0.93222 1 3307200 72597 2126 48506 49561 84506 84506 -0.03023193219200948 VQAYSHYEIF 10 Unmodified _VQAYSHYEIF_ 0 0 0 ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM ENST00000571666.1_1_16:21273345-21289551:-|nuORF ENST00000571666.1_1_16:21273345-21289551:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.8017578125 2 628.800946 1255.58734 0.38692 0.0002433 0.96651 0.00060775 1.3534 0.00085104 628.8011555486057 59.741 0.39636 59.688 59.46 59.856 -0.053062 50 19 4 0 0 0 0.60623 1 32642 32642 10.824 0 1 8992800 72598 2126 48506 49561 84507 84507 -0.03023193219200948 VQAYSHYEIF 10 Unmodified _VQAYSHYEIF_ 0 0 0 ENST00000571666.1_1_16:21273345-21289551:-|nuORF;ENSG00000103316|ENST00000572914|CRYM ENST00000571666.1_1_16:21273345-21289551:-|nuORF ENST00000571666.1_1_16:21273345-21289551:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.7999877929688 2 628.800946 1255.58734 0.96057 0.00060401 -0.61375 -0.00038593 0.34682 0.00021808 628.8002929368256 55.179 0.49446 49.258 49.078 49.573 -5.9211 53 30 2 0 0 0 0.52888 1 35069 35069 14.838 0.93222 1 18656000 72599 2126 48506 49561 84508 84508 -0.03023193219200948 VQCHCFYSGP 10 Unmodified _VQCHCFYSGP_ 0 0 0 REV__nc|ENSG00000124159|O95460-3|MATN4 REV__nc|ENSG00000124159|O95460-3|MATN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8253173828125 3 380.824888 1139.45284 0.93376 0.0003556 -0.45586 -0.0001736 0.4779 0.000182 380.8248241103297 80.204 0.35091 79.715 79.533 79.884 -0.48932 30 13 3 0 0 0 0.71413 1 43913 43913 0.56317 0 1 776390 + 72600 19421 48507 49562 84509 84509 -0.11131293237122009 VQCPRFTLFN 10 Unmodified _VQCPRFTLFN_ 0 0 0 ENSG00000186075|ENST00000348931|ZPBP2 ENSG00000186075|ENST00000348931|ZPBP2 ENSG00000186075|ENST00000348931|ZPBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8078002929688 2 612.813333 1223.61211 NaN NaN NaN NaN NaN NaN NaN 78.391 1 78.443 77.943 78.943 0.052452 0 0 0 0.57227 1 43289 43289 22.736 0 1 72601 9448 48508 49563 84510 84510 0.009251633825442696 VQDEFSLQPE 10 Unmodified _VQDEFSLQPE_ 0 0 0 ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B ENSG00000174705|ENST00000311601|SH3PXD2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.782958984375 2 596.280043 1190.54553 0.54217 0.00032328 -0.64271 -0.00038324 -0.10054 -5.9952E-05 596.7807072012365 42.814 0.12066 38.129 38.055 38.176 -4.6846 10 7 2 0 0 0 0.42143 1 25919 25919 20.415 0 1 27946000 72602 8449 48509 49564 84511 84511 -0.04211793698368638 VQDKVMCLKLF 11 Unmodified _VQDKVMCLKLF_ 0 0 0 REV__ENST00000368072.9_1_1:160247107-160247371:-|nuORF REV__ENST00000368072.9_1_1:160247107-160247371:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.3606567382812 2 662.361801 1322.70905 0.73441 0.00048644 -1.2553 -0.00083149 -0.52094 -0.00034505 662.3611225892772 74.408 0.31846 73.932 73.768 74.087 -0.47588 21 13 2 0 0 0 0.70147 1 40734 40734 8.1555 0.54658 1 1419400 + 72603 26003 48510 49565 84512 84512 0.06060389547315026 VQDLGQERFTF 11 Unmodified _VQDLGQERFTF_ 0 0 0 REV__ENST00000372703.1_1_1:40975084-40975216:+|nuORF REV__ENST00000372703.1_1_1:40975084-40975216:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3346557617188 2 670.335684 1338.65681 0.55835 0.00037428 -1.5812 -0.00106 -1.0229 -0.00068568 670.3348866512151 47.987 0.17551 47.634 47.555 47.73 -0.3526 15 8 2 0 0 0 0.29175 1 25746 25746 27.223 8.8501 1 5288200 + 72604 26121 48511 49566 84513 84513 0.001032657295354511 VQEDEQDNCE 10 Unmodified _VQEDEQDNCE_ 0 0 0 ENSG00000213626|ENST00000395323|LBH;LBH|p.E97D|1|0.15|ENSG00000213626|chr2:30257594-30257594|G/T|missense_variant ENSG00000213626|ENST00000395323|LBH ENSG00000213626|ENST00000395323|LBH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.72216796875 2 604.722232 1207.42991 NaN NaN NaN NaN NaN NaN NaN 15.804 1 15.81 15.31 16.31 0.0050564 0 0 0 1.0061 1 7894 7894 0 0 1 72605 10448 48512 49567 84514 84514 -0.16550685611559857 VQEFIPYVF 9 Unmodified _VQEFIPYVF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.802490234375 2 571.30005 1140.58555 0.61655 0.00035224 -1.6402 -0.00093703 -1.0236 -0.0005848 571.8014728701083 76.49 0.36034 70.315 70.128 70.489 -6.1757 28 19 2 0 0 0 0.23158 1 50002 50002 20.454 1.1966 1 15635000 72606 3762;16168 48513 49568 84515 84515 0.02087797762851551 VQEIKAEAV 9 Unmodified _VQEIKAEAV_ 0 0 0 ENST00000504456.1_1_5:102343300-102364769:+|nuORF ENST00000504456.1_1_5:102343300-102364769:+|nuORF ENST00000504456.1_1_5:102343300-102364769:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7796325683594 2 493.779482 985.544411 0.48191 0.00023796 0.18791 9.2788E-05 0.66983 0.00033075 493.77936356822227 59.973 0.21128 59.973 59.857 60.068 0 12 9 2 0 0 0 0.34999 1 33445 33445 14.838 0.93222 1 2210500 72607 14495 48514 49569 84516 84516 0.051060367233731085 VQENSAAKTY 10 Unmodified _VQENSAAKTY_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7755126953125 2 555.774928 1109.5353 1.1458 0.0006368 -0.58112 -0.00032297 0.56467 0.00031383 555.7750356748963 50.633 0.84397 45.088 44.755 45.599 -5.5446 127 52 4 0 0 0 0.32072 1 31650 31650 26.268 9.1552 1 486270000 72608 1378 48515 49570 84517 84517 -0.015083566329394671 VQEPTRSR 8 Unmodified _VQEPTRSR_ 0 0 0 REV__ENSG00000145246|ENST00000273859|ATP10D REV__ENSG00000145246|ENST00000273859|ATP10D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 975.5379638671875 1 972.522118 971.514842 0.14878 0.00014469 0.84755 0.00082426 0.99632 0.00096895 972.5213546286602 63.79 0.43537 63.79 63.636 64.071 0 33 17 4 0 0 0 0.80722 1 35593 35593 2.3027 0 1 2188500 + 72609 20763 48516 49571 84518 84518 0.0279451749790951 VQERDESY 8 Unmodified _VQERDESY_ 0 0 0 REV__nc|ENSG00000173805|P54257-3|HAP1 REV__nc|ENSG00000173805|P54257-3|HAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7332153320312 2 513.230353 1024.44615 -0.74194 -0.00038079 3.8817 0.0019922 3.1397 0.0016114 513.232978651543 32.855 0.15591 32.855 32.772 32.927 0 12 7 2 0 0 0 0.79783 1 17194 17194 7.9102 0.62092 1 1081800 + 72610 22749 48517 49572 84519 84519 -0.06509191592465413 VQERNRCVLGF 11 Unmodified _VQERNRCVLGF_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.848876953125 2 660.845696 1319.67684 4.5937 0.0030357 -0.38944 -0.00025736 4.2042 0.0027784 660.8453929919772 98.999 0.16582 98.971 98.863 99.028 -0.028282 9 5 2 0 0 0 0.48615 1 55004 55004 17.113 7.7298 1 2715400 + 72611 19129 48518 49573 84520 84520 0.02978738188517127 VQFLRLLS 8 Unmodified _VQFLRLLS_ 0 0 0 REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF REV__ENST00000534336.1_1_11:65273365-65273455:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 488.3015747070312 2 488.302927 974.591301 NaN NaN NaN NaN NaN NaN NaN 105.02 1 98.844 98.344 99.344 -6.1757 0 0 0 0.97444 1 70317 70317 2.3027 0 1 + 72612 28500 48519 49574 84521 84521 0.10298941065184408 VQGAVGIL 8 Unmodified _VQGAVGIL_ 0 0 0 nc|ENSG00000177675|Q9NR16-3|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1 nc|ENSG00000177675|Q9NR16-3|CD163L1 nc|ENSG00000177675|Q9NR16-3|CD163L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.7357482910156 2 378.734346 755.454139 NaN NaN NaN NaN NaN NaN NaN 65.122 1 65.122 64.622 65.622 0 0 0 0 0.97444 1 36328 36328 0 0 1 72613 8700 48520 49575 84522 84522 0.0666303218563371 VQGAVGIL 8 Unmodified _VQGAVGIL_ 0 0 0 nc|ENSG00000177675|Q9NR16-3|CD163L1;nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1 nc|ENSG00000177675|Q9NR16-3|CD163L1 nc|ENSG00000177675|Q9NR16-3|CD163L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.7359008789062 2 378.734346 755.454139 NaN NaN NaN NaN NaN NaN NaN 55.782 1 55.304 54.804 55.804 -0.47798 0 0 0 0.97444 1 30268 30268 0 0 1 72614 8700 48520 49575 84523 84523 0.0666303218563371 VQGEYIKDMGF 11 Unmodified _VQGEYIKDMGF_ 0 0 0 REV__ENST00000465511.1_1_11:118431647-118432142:+|nuORF REV__ENST00000465511.1_1_11:118431647-118432142:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.8064575195312 2 643.807913 1285.60127 0.30498 0.00019635 -3.1069 -0.0020002 -2.8019 -0.0018039 643.805619943199 86.703 0.27641 86.2 86.044 86.32 -0.50318 21 10 3 0 0 0 0.6889 1 47434 47434 5.2969 3.4526 1 675810 + 72615 19341 48521 49576 84524 84524 -0.0301028378241881 VQGHLPLQKP 10 Unmodified _VQGHLPLQKP_ 0 0 0 REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF REV__ENST00000296575.7_1_4:145567307-145567847:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8906860351562 3 372.888986 1115.64513 1.4844 0.00055353 1.7865 0.00066615 3.2709 0.0012197 372.88984307618796 42.512 0.67685 37.828 37.317 37.994 -4.6846 70 44 2 0 0 0 0.67046 1 25685 25685 6.1918 0.89496 1 50559000 + 72616 25273 48522 49577 84525 84525 0.09193113496917249 VQGIFTGP 8 Unmodified _VQGIFTGP_ 0 0 0 ENST00000228799.6_1_12:2921853-2921937:+|nuORF ENST00000228799.6_1_12:2921853-2921937:+|nuORF ENST00000228799.6_1_12:2921853-2921937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4415283203125 1 818.44068 817.433404 -0.05312 -4.3475E-05 0.56786 0.00046476 0.51474 0.00042128 818.44125729584 35.876 0.18204 35.876 35.732 35.914 0 12 8 2 0 0 0 0.57045 1 18962 18962 28.487 0 1 2191200 72617 11054 48523 49578 84526 84526 0.01738441805957791 VQGNFHISFLE 11 Unmodified _VQGNFHISFLE_ 0 0 0 REV__ENSG00000198734|ENST00000367797|F5;REV__CON__Q28107 REV__ENSG00000198734|ENST00000367797|F5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8882141113281 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 30.866 1 30.866 30.366 31.366 0 0 0 0 0.94184 1 16055 16055 0.40827 0 1 + + 72618 24048;16864 48524 49579 84527 84527 0.007201845634881465 VQGRILNIH 9 Unmodified _VQGRILNIH_ 0 0 0 REV__ENSG00000143643|ENST00000366661|TTC13 REV__ENSG00000143643|ENST00000366661|TTC13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.77734375 2 525.314358 1048.61416 -0.36215 -0.00019024 -2.2461 -0.0011799 -2.6083 -0.0013702 525.3129668524946 77.003 0.28344 76.523 76.322 76.606 -0.47945 16 12 2 0 0 0 0.21473 1 42122 42122 4.3292 0.38484 1 676840 + 72619 20659 48525 49580 84528 84528 0.09179960182632385 VQGRPEQL 8 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VQGRPEQL_ 1 0 0 ENST00000252622.14_1_19:2321556-2321658:-|nuORF ENST00000252622.14_1_19:2321556-2321658:-|nuORF ENST00000252622.14_1_19:2321556-2321658:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.7618103027344 2 484.761623 967.508694 NaN NaN NaN NaN NaN NaN NaN 32.393 1 28.537 28.037 29.037 -3.8562 0 0 0 0.25842 1 18459 18459 71.134 12.455 1 72620 11150 48526 49581 84529 84529 0.02363999266378869 VQGVWPSF 8 Unmodified _VQGVWPSF_ 0 0 0 REV__ENSG00000111817|ENST00000644252|DSE REV__ENSG00000111817|ENST00000644252|DSE MSMS AL20221201_MKP_PDAC_01 4 460.2264709472656 2 460.237253 918.459953 NaN NaN NaN NaN NaN NaN NaN 49.887 1 44.348 43.848 44.848 -5.5391 0 0 0 0.85975 1 31220 31220 20.454 5.8719 1 + 72621 18770 48527 49582 84530 84530 -0.002538693027190675 VQHIPVSP 8 Unmodified _VQHIPVSP_ 0 0 0 REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF REV__ENST00000416648.1_1_3:183605526-183606234:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.75048828125 2 438.750527 875.486502 -0.94438 -0.00041435 0.95866 0.00042061 0.01428 6.2652E-06 438.7509137112106 32.287 0.1904 32.287 32.164 32.355 0 13 9 2 0 0 0 0.75262 1 16853 16853 12.532 3.9383 1 1635000 + 72622 26774 48528 49583 84531 84531 0.04377819588626153 VQHLPSTWC 9 Unmodified _VQHLPSTWC_ 0 0 0 ENST00000522295.5_1_16:67201049-67201403:+|nuORF ENST00000522295.5_1_16:67201049-67201403:+|nuORF ENST00000522295.5_1_16:67201049-67201403:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.3057861328125 2 535.758027 1069.5015 0.63171 0.00033844 3.343 0.001791 3.9747 0.0021295 535.7598271134252 67.08 0.28246 60.904 60.698 60.981 -6.1757 20 15 2 0 0 0 0.20139 1 43649 43649 6.7232 0 1 13405000 72623 14753 48529 49584 84532 84532 -0.03047056605691978 VQIGDIVTV 9 Unmodified _VQIGDIVTV_ 0 0 0 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 ENSG00000142534|ENST00000270625|RPS11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.2743530273438 2 472.276575 942.538597 1.059 0.00050015 -0.74057 -0.00034975 0.31845 0.0001504 472.27625192405657 79.869 0.42375 73.693 73.518 73.942 -6.1757 42 25 2 0 0 0 0.039985 1 52318 52318 49.933 2.1843 1 17282000 72624 5423 48530 49585 84533 84533 0.0650293821172454 VQILGGRWSI 10 Unmodified _VQILGGRWSI_ 0 0 0 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8893432617188 3 376.888986 1127.64513 -0.022178 -8.3588E-06 0.71707 0.00027026 0.69489 0.0002619 376.88927413616784 33.17 0.2972 33.199 33.041 33.338 0.028931 29 12 3 0 0 0 0.20962 1 17417 17417 28.234 0 1 6256300 + 72625 21515 48531 49586 84534 84534 0.08641113496878461 VQILLRLLQE 10 Unmodified _VQILLRLLQE_ 0 0 0 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 REV__nc|ENSG00000161558|Q96AN5-3|TMEM143 MSMS AL20221201_MKP_PDAC_01 4 612.8875732421875 2 612.887355 1223.76016 NaN NaN NaN NaN NaN NaN NaN 99.278 1 93.102 92.602 93.602 -6.1757 0 0 0 0.95103 1 66060 66060 5.7319 1.4026 1 + 72626 29735 48532 49587 84535 84535 0.15722797908028951 VQKEHEEYMK 10 Unmodified _VQKEHEEYMK_ 0 0 0 nc|ENSG00000203880|Q9NV79-2|PCMTD2;ENSG00000203880|ENST00000308824|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 nc|ENSG00000203880|Q9NV79-2|PCMTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8799438476562 3 440.879939 1319.61799 -0.59216 -0.00026107 1.3367 0.00058934 0.74458 0.00032827 441.2150049325219 17.094 0.033817 17.096 17.071 17.105 0.0010548 12 10 2 0 0 0 0.71981 1 8474 8474 0.69767 0 1 763820 72627 10231 48533 49588 84536 84536 -0.029037828964646906 VQKKKVKEL 9 Unmodified _VQKKKVKEL_ 0 0 0 nc|ENSG00000131504|O60610-2|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;ENSG00000131504|ENST00000389054|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 nc|ENSG00000131504|O60610-2|DIAPH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3637084960938 2 550.363516 1098.71248 1.5309 0.00084253 -1.3756 -0.00075709 0.15524 8.5438E-05 550.3635241517832 103.79 0.16046 97.613 97.551 97.712 -6.1757 78 39 3 0 0 0 0.55775 1 69533 69533 3.9444 0 1 11973000 72628 4334 48534 49589 84537 84537 0.16707143707844807 VQKLEEQF 8 Unmodified _VQKLEEQF_ 0 0 0 REV1-AFF3|1|fusion;nc|ENSG00000135945|Q9UBZ9-3|REV1;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1 REV1-AFF3|1|fusion REV1-AFF3|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7719116210938 2 510.771657 1019.52876 0.31785 0.00016235 -0.71377 -0.00036457 -0.39592 -0.00020222 510.77152845096475 84.138 0.47162 83.638 83.392 83.864 -0.49961 61 20 4 0 0 0 0.80143 1 46151 46151 5.7604 0 1 6435700 72629 4765 48535 49590 84538 84538 0.019777502063334396 VQKLKGSNL 9 Unmodified _VQKLKGSNL_ 0 0 0 nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19;ENST00000502873.5_1_4:26585743-26755545:+|nuORF nc|ENSG00000109680|Q8N5T2-2|TBC1D19 nc|ENSG00000109680|Q8N5T2-2|TBC1D19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.802978515625 2 493.803291 985.59203 0.3363 0.00016607 -0.37763 -0.00018647 -0.041327 -2.0407E-05 493.80308026917004 54.43 0.21973 54.363 54.223 54.443 -0.06694 17 10 2 0 0 0 0.0083938 1 29542 29542 108 14.831 1 7081200 72630 2664 48536 49591 84539 84539 0.09865735714231505 VQKMSHGSN 9 Oxidation (M) _VQKM(Oxidation (M))SHGSN_ VQKM(1)SHGSN VQKM(42)SHGSN 0 0 1 ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L ENSG00000175087|ENST00000374269|PDIK1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2370910644531 2 502.234916 1002.45528 1.1075 0.0005562 0.59348 0.00029807 1.7009 0.00085427 502.2348737974599 52.804 0.3187 47.069 46.856 47.174 -5.7345 26 17 2 0 0 0 0.06294 1 33258 33258 41.84 7.7372 1 36161000 72631 8483 48537 49592 84540 84540 1440 -0.045851215077846064 VQKQAITR 8 Unmodified _VQKQAITR_ 0 0 0 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 ENSG00000134504|ENST00000580059|KCTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.2872314453125 2 472.287808 942.561064 0.56497 0.00026683 -1.3191 -0.00062297 -0.75408 -0.00035614 472.2869753512232 85.406 0.36418 84.904 84.7 85.064 -0.5015 52 34 2 0 0 0 0.80992 1 46669 46669 0.69038 0 1 4350000 72632 4614 48538 49593 84541 84541 0.08748582399971383 VQKSPILI 8 Unmodified _VQKSPILI_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|19|1|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|19|1|sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|19|1|sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2931518554688 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.80992 1 71710 71710 0.69038 0 1 16154000 72633 15917 48539 49594 84542 84542 0.11708136316622131 VQKVHLLSS 9 Unmodified _VQKVHLLSS_ 0 0 0 REV__chr2:168902554-168907568|71|18.52|0.02|10.03|+|0|G6PC2,G6PC2|1 REV__chr2:168902554-168907568|71|18.52|0.02|10.03|+|0|G6PC2,G6PC2|1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.3499145507812 2 505.803291 1009.59203 0.42204 0.00021347 0.51648 0.00026124 0.93852 0.00047471 505.80331475429995 61.041 0.19819 60.998 60.906 61.104 -0.04351 15 9 2 0 0 0 0.18521 1 33316 33316 16.942 0 1 3445500 + 72634 16798 48540 49595 84543 84543 0.08761735714222141 VQKVLRWRKRV 11 Unmodified _VQKVLRWRKRV_ 0 0 0 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 REV__nc|ENSG00000171302|Q8WVQ1-2|CANT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.9837646484375 3 489.984283 1466.93102 NaN NaN NaN NaN NaN NaN NaN 16.077 1 16.083 15.583 16.583 0.0050564 0 0 0 0.9435 1 8044 8044 0 0 1 + 72635 29776 48541 49596 84544 84544 0.21623173069974655 VQKWCCSCL 9 Unmodified _VQKWCCSCL_ 0 0 0 REV__ENST00000604509.5_1_10:122659587-122664224:+|nuORF REV__ENST00000604509.5_1_10:122659587-122664224:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2363891601562 2 535.235015 1068.45548 NaN NaN NaN NaN NaN NaN NaN 76.281 1 76.281 75.781 76.781 0 0 0 0 0.82015 1 42416 42416 5.2307 0 1 + 72636 29286 48542 49597 84545 84545 -0.07601161103821141 VQLEPFLH 8 Unmodified _VQLEPFLH_ 0 0 0 ENSG00000161896|ENST00000293756|IP6K3 ENSG00000161896|ENST00000293756|IP6K3 ENSG00000161896|ENST00000293756|IP6K3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 982.5353393554688 1 982.535643 981.528367 1.5429 0.001516 -0.44477 -0.000437 1.0982 0.001079 982.5340578625664 103.37 0.037376 97.194 97.179 97.216 -6.1757 12 6 2 0 0 0 0.80975 1 69311 69311 0.79363 0 1 7720400 72637 6813 48543 49598 84546 84546 0.036863752771296276 VQLLPAPTP 9 Unmodified _VQLLPAPTP_ 0 0 0 nc|ENSG00000163704|Q5FWE3-2|PRRT3;ENSG00000163704|ENST00000412055|PRRT3 nc|ENSG00000163704|Q5FWE3-2|PRRT3 nc|ENSG00000163704|Q5FWE3-2|PRRT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2806396484375 2 468.28166 934.548768 0.63049 0.00029525 -2.5811 -0.0012087 -1.9506 -0.00091345 468.28061037521934 82.08 0.27126 81.585 81.471 81.742 -0.4952 16 10 2 0 0 0 0.55144 1 44961 44961 4.3292 0 1 489010 72638 7055 48544 49599 84547 84547 0.07887545936932838 VQLLTLLVF 9 Unmodified _VQLLTLLVF_ 0 0 0 REV__ENSG00000134538|ENST00000256958|SLCO1B1 REV__ENSG00000134538|ENST00000256958|SLCO1B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.83984375 2 523.336436 1044.65832 1.0816 0.00056602 -0.46852 -0.00024519 0.61304 0.00032083 523.8389143384093 92.294 0.47894 86.118 85.773 86.252 -6.1757 66 28 3 0 0 0 0.39863 1 60842 60842 12.532 0 1 28848000 + 72639 19991 48545 49600 84548 84548 0.13777551556268008 VQLRRPLRL 9 Unmodified _VQLRRPLRL_ 0 0 0 REV__ENST00000296350.9_1_3:196735574-196735811:-|nuORF REV__ENST00000296350.9_1_3:196735574-196735811:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.2539978027344 3 384.255891 1149.74584 NaN NaN NaN NaN NaN NaN NaN 101.16 1 101.12 100.62 101.62 -0.04216 0 0 0 0.85447 1 56199 56199 0.96228 0 1 + 72640 25269 48546 49601 84549 84549 0.1769619027038516 VQLTYPQCL 9 Unmodified _VQLTYPQCL_ 0 0 0 ENSG00000250673|ENST00000623665|REELD1 ENSG00000250673|ENST00000623665|REELD1 ENSG00000250673|ENST00000623665|REELD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8032836914062 2 532.775885 1063.53722 0.40591 0.00021626 -3.3062 -0.0017614 -2.9003 -0.0015452 532.7744611810158 78.915 0.40364 78.97 78.754 79.158 0.054977 27 15 3 0 0 0 0.16418 1 43624 43624 25.399 6.1423 1 2236700 72641 10754 48547 49602 84550 84550 0.007989808513002572 VQMGNVQLAL 10 Unmodified _VQMGNVQLAL_ 0 0 0 ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 ENSG00000198753|ENST00000361971|PLXNB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7930908203125 2 536.794609 1071.57467 NaN NaN NaN NaN NaN NaN NaN 76.875 1 76.395 75.895 76.895 -0.47945 0 0 0 0.7417 1 42089 42089 14.838 1.7958 1 72642 10142 48548 49603 84551 84551 0.041740721168935124 VQNDTLLQV 9 Unmodified _VQNDTLLQV_ 0 0 0 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 ENSG00000184897|ENST00000333762|H1-10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7920532226562 2 515.282389 1028.55022 0.62554 0.00032233 0.82825 0.00042678 1.4538 0.00074911 515.2831922591375 57.288 0.28707 57.288 57.156 57.443 0 28 12 3 0 0 0 0.039985 1 31843 31843 49.933 2.1843 1 5058700 72643 9297 48549 49604 84552 84552 0.03709135235044414 VQNGKHFKF 9 Unmodified _VQNGKHFKF_ 0 0 0 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8700561523438 3 368.869814 1103.58761 0.050924 1.8784E-05 0.70933 0.00026165 0.76025 0.00028044 368.8700859409053 19.503 0.21191 19.511 19.376 19.588 0.0078487 41 14 4 0 0 0 0.23158 1 9903 9903 24.991 12.75 1 12494000 72644 7023 48550 49605 84553 84553 0.03996271291316589 VQNGKHFKF 9 Unmodified _VQNGKHFKF_ 0 0 0 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.8703002929688 3 368.869814 1103.58761 1.7787 0.00065612 -1.1507 -0.00042447 0.628 0.00023165 368.8694139452885 20.942 0.55704 18.249 17.95 18.507 -2.693 101 33 4 0 0 0 0.07916 2 11206 11097;11206 28.495 14.88 1 64217000 72645 7023 48550 49605 84554;84555 84555 0.03996271291316589 VQNGKHFKF 9 Unmodified _VQNGKHFKF_ 0 0 0 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 368.869814 1103.58761 -0.4737 -0.00017474 1.0852 0.00040032 0.61154 0.00022558 368.87095214393406 19.567 0.11283 19.567 19.515 19.628 0 0.041876 0.0006115 NaN 24.991 27 15 2 NaN NaN NaN NaN 0 NaN NaN 0 759750 72646 7023 48550 49605 0.03996271291316589 VQNGKHFKF 9 Unmodified _VQNGKHFKF_ 0 0 0 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 ENSG00000163586|ENST00000295834|FABP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 368.869814 1103.58761 -0.50525 -0.00018637 0.041735 1.5395E-05 -0.46352 -0.00017098 368.8697640380342 19.47 0.27552 19.498 19.293 19.569 0.028357 -0.027073 -0.00054327 NaN 24.991 49 26 3 NaN NaN NaN NaN 0 NaN NaN 0 2166800 72647 7023 48550 49605 0.03996271291316589 VQNKEDVNLI 10 Unmodified _VQNKEDVNLI_ 0 0 0 REV__nc|ENSG00000166736|P46098-3|HTR3A REV__nc|ENSG00000166736|P46098-3|HTR3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.32080078125 2 586.319502 1170.62445 1.2359 0.00072461 -0.3009 -0.00017642 0.93497 0.00054819 586.3191759118938 96.748 0.37025 90.573 90.37 90.741 -6.1757 68 21 4 0 0 0 0.16524 1 64146 64146 37.974 7.3375 1 111710000 + 72648 22144 48551 49606 84556 84556 0.04596478326561737 VQNLPSSVQTV 11 Unmodified _VQNLPSSVQTV_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.3173217773438 2 586.319502 1170.62445 1.2359 0.00072461 -0.3009 -0.00017642 0.93497 0.00054819 586.3191759118938 96.748 0.37025 90.573 90.37 90.741 -6.1757 68 21 4 0 0 0 0.065225 1 64030 64030 47.594 3.7361 1 111710000 72649 4011 48552 49607 84557 84557 0.04596478326561737 VQNQGPSF 8 Unmodified _VQNQGPSF_ 0 0 0 REV__nc|ENSG00000101811|P33240-2|CSTF2 REV__nc|ENSG00000101811|P33240-2|CSTF2 MSMS AL20221201_MKP_PDAC_01 4 438.7164916992188 2 438.714142 875.413731 NaN NaN NaN NaN NaN NaN NaN 68.136 1 61.96 61.46 62.46 -6.1757 0 0 0 0.4392 1 44451 44451 48.346 1.425 1 + 72650 18193 48553 49608 84558 84558 -0.028959342047983228 VQNRLIDIYK 10 Unmodified _VQNRLIDIYK_ 0 0 0 ENSG00000186795|ENST00000334549|KCNK18 ENSG00000186795|ENST00000334549|KCNK18 ENSG00000186795|ENST00000334549|KCNK18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5815124511719 3 421.24695 1260.71902 0.20298 8.5504E-05 -0.75117 -0.00031643 -0.54819 -0.00023092 421.2465995387412 26.954 0.27175 26.982 26.824 27.095 0.028664 20 12 2 0 0 0 0.67755 1 13956 13956 5.4027 0.99656 1 11600000 72651 9506 48554 49609 84559 84559 0.09909036868566545 VQNVIENIF 9 Unmodified _VQNVIENIF_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.292724609375 2 538.292756 1074.57096 0.16352 8.8019E-05 -0.035225 -1.8962E-05 0.12829 6.9058E-05 538.2925386304258 51.928 0.26582 51.495 51.346 51.612 -0.43367 23 13 2 0 0 0 0.28023 1 28068 28068 18.146 1.9972 1 4194700 72652 9690 48555 49610 84560 84560 0.036657256147236694 VQPEAATCAGP 11 Unmodified _VQPEAATCAGP_ 0 0 0 ENSG00000008710|ENST00000262304|PKD1;nc|ENSG00000008710|P98161-3|PKD1;nc|ENSG00000008710|P98161-2|PKD1;ENST00000532415.5_1_16:18480742-18495490:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF ENSG00000008710|ENST00000262304|PKD1 ENSG00000008710|ENST00000262304|PKD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2443237304688 2 522.244949 1042.47534 0.40908 0.00021364 0.12518 6.5375E-05 0.53426 0.00027901 522.2451906666806 48.117 0.37243 48.117 47.978 48.351 0 25 18 2 0 0 0 0.50515 1 26356 26356 16.149 0.30192 1 4620800 72653 395 48556 49611 84561 84561 -0.04419370567848091 VQPEEEPK 8 Unmodified _VQPEEEPK_ 0 0 0 ENST00000482608.6_1_8:67372619-67408719:+|nuORF ENST00000482608.6_1_8:67372619-67408719:+|nuORF ENST00000482608.6_1_8:67372619-67408719:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2402038574219 2 478.24019 954.465826 -0.17403 -8.3227E-05 1.5691 0.00075043 1.3951 0.0006672 478.2402649923592 48.4 0.36638 48.4 48.212 48.579 0 37 17 3 0 0 0 0.76266 1 26617 26617 11.64 0 1 23178000 72654 14106 48557 49612 84562 84562 -0.013228155817046172 VQPGELPF 8 Unmodified _VQPGELPF_ 0 0 0 nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P nc|ENSG00000164393|Q8IZF7|ADGRF2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4712524414062 1 886.466895 885.459619 0.36091 0.00031993 0.42672 0.00037827 0.78762 0.0006982 886.4670798847999 57.166 0.63231 57.166 56.835 57.467 0 41 27 2 0 0 0 0.80763 1 31681 31681 2.0598 0 1 774650 72655 16342 48558 49613 84563 84563 0.012307109774383207 VQPGPNRF 8 Unmodified _VQPGPNRF_ 0 0 0 REV__ENSG00000268223|ENST00000686077|ARL14EPL REV__ENSG00000268223|ENST00000686077|ARL14EPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7461242675781 2 457.745776 913.477 0.49505 0.00022661 1.2247 0.00056059 1.7197 0.0007872 457.7463011024708 72.452 0.33188 71.976 71.813 72.145 -0.47609 30 15 3 0 0 0 0.80624 1 39632 39632 2.8892 0 1 1904400 + 72656 24619 48559 49614 84564 84564 0.016800513030943875 VQPHFLEF 8 Unmodified _VQPHFLEF_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-2|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7640686035156 2 508.763635 1015.51272 0.34089 0.00017343 2.4611 0.0012521 2.802 0.0014255 508.76474500760156 45.412 0.31466 40.458 40.311 40.626 -4.9549 31 21 2 0 0 0 0.74163 1 27882 27882 13.508 2.684 1 31669000 72657 7991 48560 49615 84565 84565 0.005580887600899587 VQPHRPGQP 9 Unmodified _VQPHRPGQP_ 0 0 0 REV__ENST00000433867.5_3_19:47219703-47220288:-|nuORF REV__ENST00000433867.5_3_19:47219703-47220288:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.258544921875 2 508.275232 1014.53591 0.37654 0.00019139 0.7503 0.00038136 1.1268 0.00057275 508.27619341551286 76.936 0.50696 76.936 76.708 77.215 0 78 31 3 0 0 0 0.20727 1 42653 42653 7.9102 0 1 9441200 + 72658 27004 48561 49616 84566 84566 0.02922527597422686 VQPKPHHRAHY 11 Unmodified _VQPKPHHRAHY_ 0 0 0 nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2 nc|ENSG00000101096|Q13469-5|NFATC2 nc|ENSG00000101096|Q13469-5|NFATC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.365478515625 2 685.365444 1368.71634 NaN NaN NaN NaN NaN NaN NaN 95.286 1 95.286 94.786 95.786 0 0 0 0 0.9435 1 52671 52671 0 0 1 72659 1912 48562 49617 84567 84567 0.046726262542961194 VQPKQDAFANF 11 Unmodified _VQPKQDAFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.8204345703125 2 632.81967 1263.62479 0.33087 0.00020938 0.39842 0.00025213 0.72928 0.00046151 632.820053124655 47.003 0.26954 46.666 46.524 46.794 -0.33664 31 13 3 0 0 0 0.073778 1 25155 25155 45.74 21.719 1 8993300 72660 2954 48563 49618 84568 84568 0.003518980464150445 VQPKQDAFANF 11 Unmodified _VQPKQDAFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8195190429688 2 632.81967 1263.62479 0.25409 0.00016079 0.32539 0.00020592 0.57948 0.00036671 632.8199292212544 51.863 0.35252 46.128 45.951 46.304 -5.7345 54 23 3 0 0 0 8.6319E-10 2 32725 32586;32725 117.84 81.331 1 104940000 72661 2954 48563 49618 84569;84570 84570 0.003518980464150445 VQPKQDAFANF 11 Unmodified _VQPKQDAFANF_ 0 0 0 ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;ENST00000522381.1_1_5:157214656-157215007:-|nuORF ENSG00000113282|ENST00000411809|CLINT1 ENSG00000113282|ENST00000411809|CLINT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 632.81967 1263.62479 0.26995 0.00017083 1.6581 0.0010493 1.9281 0.0012201 632.8206252715095 46.698 0.19594 46.698 46.585 46.781 0 0.015868 0.00094005 NaN 45.74 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1668900 72662 2954 48563 49618 0.003518980464150445 VQPRIVARL 9 Unmodified _VQPRIVARL_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.2303161621094 3 351.229342 1050.6662 -0.31051 -0.00010906 1.6388 0.0005756 1.3283 0.00046654 351.22989242362763 37.071 0.2355 37.092 37.005 37.24 0.021545 16 10 2 0 0 0 0.25681 1 19679 19679 13.615 2.8154 1 1166700 72663 4239 48564 49619 84571 84571 0.14289123596404352 VQPRNWLLF 9 Unmodified _VQPRNWLLF_ 0 0 0 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8333740234375 2 586.832383 1171.65021 1.642 0.00096359 0.85517 0.00050184 2.4972 0.0014654 586.8327067180703 81.434 0.49239 81.494 81.26 81.752 0.059929 58 18 4 0 0 0 0.0086209 2 44979 44979;45079 88.904 56.598 1 44516000 72664 833 48565 49620 84572;84573 84572 0.07125417359520725 VQPRNWLLF 9 Unmodified _VQPRNWLLF_ 0 0 0 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8350219726562 2 586.832383 1171.65021 1.4802 0.00086865 0.61901 0.00036326 2.0993 0.0012319 586.832612355849 98.302 0.23666 92.126 92 92.237 -6.1757 63 15 6 0 0 0 0.085319 2 65134 65134;65271 39.957 14.558 1 615050000 72665 833 48565 49620 84574;84575 84574 0.07125417359520725 VQPRNWLLFA 10 Unmodified _VQPRNWLLFA_ 0 0 0 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3505859375 2 622.35094 1242.68733 NaN NaN NaN NaN NaN NaN NaN 80.302 1 80.359 79.859 80.859 0.057587 0 0 0 0.47175 1 44385 44385 27.629 13.223 1 72666 833 48566 49621 84576 84576 0.07569088905279386 VQPRNWLLFA 10 Unmodified _VQPRNWLLFA_ 0 0 0 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 ENSG00000060762|ENST00000360961|MPC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3507080078125 2 622.35094 1242.68733 0.97352 0.00060587 1.0347 0.00064397 2.0083 0.0012498 622.3515765006741 97.947 0.25124 91.772 91.64 91.891 -6.1757 38 15 3 0 0 0 0.035736 2 64869 64869;64997 65.235 27.261 1 192880000 72667 833 48566 49621 84577;84578 84577 0.07569088905279386 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.5380249023438 3 373.537953 1117.59203 0.44189 0.00016506 -0.036994 -1.3818E-05 0.40489 0.00015124 373.5378809022184 38.717 0.27811 38.717 38.556 38.834 0 37 12 4 0 0 0 0.2001 1 20687 20687 21.537 8.4945 1 8632700 72668 8678 48567 49622 84579 84579 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.5375671386719 3 373.537953 1117.59203 -0.018439 -6.8877E-06 -0.60642 -0.00022652 -0.62486 -0.00023341 373.5376938412263 38.994 0.44942 38.707 38.475 38.925 -0.28687 70 19 5 0 0 0 0.10734 2 20480 20480;20579 29.841 15.435 1 354610000 72669 8678 48567 49622 84580;84581 84580 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.802734375 2 559.803291 1117.59203 0.17772 9.949E-05 -0.57766 -0.00032338 -0.39994 -0.00022389 559.8029648534679 38.994 0.36244 38.707 38.498 38.861 -0.28687 38 15 3 0 0 0 0.042911 2 20608 20509;20608 48.346 14.243 1 43845000 72670 8678 48567 49622 84582;84583 84583 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.8031005859375 2 559.803291 1117.59203 0.5227 0.00029261 -0.86485 -0.00048415 -0.34216 -0.00019154 559.8027703969677 38.575 0.39299 38.587 38.408 38.801 0.011654 58 18 4 0 0 0 0.026094 2 20468 20468;20580 57.471 23.369 1 103550000 72671 8678 48567 49622 84584;84585 84584 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.5376892089844 3 373.537953 1117.59203 0.10892 4.0685E-05 -0.84058 -0.00031399 -0.73166 -0.0002733 373.53759340169773 38.569 0.49146 38.583 38.39 38.882 0.013371 87 23 6 0 0 0 0.10734 2 20498 20498;20600 29.841 10.479 1 372470000 72672 8678 48567 49622 84586;84587 84586 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5378723144531 3 373.537953 1117.59203 1.4811 0.00055323 -1.0106 -0.0003775 0.47044 0.00017573 373.537474830096 42.434 1.1016 37.749 37.44 38.542 -4.6846 188 72 4 0 0 0 0.070838 4 25601 25474;25601;25730;25853 29.841 9.3844 1 1620599999.9999998 72673 8678 48567 49622 84588;84589;84590;84591 84589 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8032836914062 2 559.803291 1117.59203 1.1121 0.00062258 -0.63164 -0.00035359 0.48051 0.00026899 559.8029513883454 42.413 0.7014 37.728 37.44 38.142 -4.6846 112 45 3 0 0 0 0.016184 3 25502 25502;25634;25763 67.344 22.937 1 403460000 72674 8678 48567 49622 84592;84593;84594 84592 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5389709472656 3 373.537953 1117.59203 1.2036 0.00044959 0.3496 0.00013059 1.5532 0.00058018 373.5380328525827 43.488 0.74379 38.723 38.607 39.351 -4.7648 83 47 3 0 0 0 0.1773 2 26599 26599;26766 18.373 11.743 1 12549000 72675 8678 48567 49622 84595;84596 84595 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MSMS AL20221201_MKP_PDAC_01 4 373.53955078125 3 373.537953 1117.59203 NaN NaN NaN NaN NaN NaN NaN 42.942 1 38.257 37.757 38.757 -4.6846 0 0 0 0.12337 1 26009 26009 29.841 11.119 1 72676 8678 48567 49622 84597 84597 0.03793735714225477 VQPSKYHFL 9 Unmodified _VQPSKYHFL_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MSMS AL20221201_MKP_PDAC_01 4 373.5383911132812 3 373.537953 1117.59203 NaN NaN NaN NaN NaN NaN NaN 43.158 1 38.393 37.893 38.893 -4.7648 0 0 0 0.18753 1 26178 26178 23.79 4.4278 1 72677 8678 48567 49622 84598 84598 0.03793735714225477 VQPSKYHFLF 10 Unmodified _VQPSKYHFLF_ 0 0 0 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 ENSG00000177383|ENST00000317897|MAGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.561279296875 3 422.560758 1264.66044 0.56 0.00023663 0.52935 0.00022368 1.0893 0.00046031 422.5608041353656 56.868 0.25671 56.799 56.619 56.876 -0.068741 23 12 2 0 0 0 0.42068 1 30888 30888 17.443 8.6909 1 7468000 72678 8678 48568 49623 84599 84599 0.038699802940755035 VQPSLFYHL 9 Unmodified _VQPSLFYHL_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.L528Rfs*6|1|0.06|ENSG00000142733|chr1:27361623-27361624|-/GC|frameshift_variant nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.29833984375 2 552.297842 1102.58113 0.44228 0.00024427 0.10392 5.7393E-05 0.5462 0.00030166 552.2978672708147 68.007 0.41144 68.032 67.794 68.206 0.025146 59 19 4 0 0 0 0.045537 1 37338 37338 46.921 16.696 1 56511000 72679 5445 48569 49624 84600 84600 0.03394333339952027 VQPSLFYHL 9 Unmodified _VQPSLFYHL_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.L528Rfs*6|1|0.06|ENSG00000142733|chr1:27361623-27361624|-/GC|frameshift_variant nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.297607421875 2 552.297842 1102.58113 0.85092 0.00046996 0.64411 0.00035574 1.495 0.0008257 552.2980070859712 75.479 1.6261 69.303 68.306 69.932 -6.1757 134 87 2 0 0 0 0.045537 4 49292 48813;49292;49417;49538 46.921 22.9 1 18826000 72680 5445 48569 49624 84601;84602;84603;84604 84602 0.03394333339952027 VQPSLFYHL 9 Unmodified _VQPSLFYHL_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.L528Rfs*6|1|0.06|ENSG00000142733|chr1:27361623-27361624|-/GC|frameshift_variant nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 552.297842 1102.58113 0.54985 0.00030368 -0.909 -0.00050204 -0.35915 -0.00019836 552.2971530204311 68.495 0.29095 68.014 67.85 68.141 -0.48071 -0.0086575 -0.00072808 NaN 46.921 35 12 4 NaN NaN NaN NaN 0 NaN NaN 0 4086300 72681 5445 48569 49624 0.03394333339952027 VQPTFTEGSLF 11 Unmodified _VQPTFTEGSLF_ 0 0 0 nc|ENSG00000170632|Q8N2F6-6|ARMC10;nc|ENSG00000170632|Q8N2F6-4|ARMC10;ENST00000313754.4_1_3:94225612-94226386:-|nuORF;nc|ENSG00000170632|Q8N2F6-5|ARMC10;nc|ENSG00000170632|Q8N2F6-3|ARMC10;nc|ENSG00000170632|Q8N2F6-2|ARMC10;ENSG00000170632|ENST00000323716|ARMC10 nc|ENSG00000170632|Q8N2F6-6|ARMC10 nc|ENSG00000170632|Q8N2F6-6|ARMC10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.310546875 2 613.308603 1224.60265 NaN NaN NaN NaN NaN NaN NaN 68.666 1 68.186 67.686 68.686 -0.48071 0 0 0 0.92234 1 37531 37531 6.2058 0.47393 1 72682 8009 48570 49625 84605 84605 -0.000663264219838311 VQPTQDVIS 9 Unmodified _VQPTQDVIS_ 0 0 0 ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7603149414062 2 493.761289 985.508025 -0.13943 -6.8846E-05 -0.12469 -6.1565E-05 -0.26412 -0.00013041 493.7611887155016 48.317 0.35938 48.317 48.132 48.491 0 43 17 3 0 0 0 0.07087 1 26457 26457 39.95 1.9757 1 43008000 72683 15585 48571 49626 84606 84606 0.014691598266608707 VQPTQDVIS 9 Unmodified _VQPTQDVIS_ 0 0 0 ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF ENST00000583370.5_1_17:25877599-25885155:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7620239257812 2 493.761289 985.508025 0.31296 0.00015453 0.86889 0.00042902 1.1819 0.00058355 493.76174660091584 56.01 0.51065 50.089 49.782 50.292 -5.9211 63 29 3 0 0 0 0.028475 1 35703 35703 56.177 3.9087 1 60998000 72684 15585 48571 49626 84607 84607 0.014691598266608707 VQPVTSSLKI 10 Unmodified _VQPVTSSLKI_ 0 0 0 ENST00000260270.2_1_11:110306670-110327713:+|nuORF ENST00000260270.2_1_11:110306670-110327713:+|nuORF ENST00000260270.2_1_11:110306670-110327713:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7875366210938 2 536.324057 1070.63356 0.9125 0.00048939 0.92523 0.00049622 1.8377 0.00098562 536.3249096007999 57.542 0.53596 51.515 51.181 51.717 -6.0275 63 28 3 0 0 0 0.22941 1 36922 36922 9.3831 0 1 69752000 72685 11223 48572 49627 84608 84608 0.10106871682910423 VQQFKQEML 9 Unmodified _VQQFKQEML_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2011108398438 3 384.202353 1149.58523 -0.24369 -9.3626E-05 -1.3031 -0.00050064 -1.5468 -0.00059427 384.2016712629195 33.47 0.31583 33.311 33.144 33.459 -0.15918 20 12 2 0 0 0 0.48152 1 17425 17425 5.2969 0 1 2687300 + 72686 19763 48573 49628 84609 84609 0.016420547713323685 VQQTIHWLF 9 Unmodified _VQQTIHWLF_ 0 0 0 ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;ENST00000535479.5_1_12:7086310-7087113:-|nuORF ENSG00000111684|ENST00000261407|LPCAT3 ENSG00000111684|ENST00000261407|LPCAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.31689453125 2 586.316566 1170.61858 0.45934 0.00026932 1.0337 0.00060607 1.493 0.00087539 586.3173595357359 79.519 0.51052 79.574 79.284 79.795 0.05497 59 19 4 0 0 0 0.033747 1 43925 43925 66.457 32.354 1 17239000 72687 2815 48574 49629 84610 84610 0.04009424605555978 VQRAFKTF 8 Unmodified _VQRAFKTF_ 0 0 0 REV__nc|ENSG00000057935|Q9BTC8-2|MTA3 REV__nc|ENSG00000057935|Q9BTC8-2|MTA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7858581542969 2 498.784902 995.55525 -0.95318 -0.00047543 2.3904 0.0011923 1.4372 0.00071687 498.7856406363616 77.827 0.4231 77.344 76.998 77.421 -0.4826 34 20 3 0 0 0 0.80722 1 42527 42527 2.3027 0 1 1583400 + 72688 17308 48575 49630 84611 84611 0.05729483888319464 VQRARSPPF 9 Unmodified _VQRARSPPF_ 0 0 0 ENSG00000228672|ENST00000434752|PROB1 ENSG00000228672|ENST00000434752|PROB1 ENSG00000228672|ENST00000434752|PROB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7549438476562 2 529.298707 1056.58286 0.98858 0.00052325 1.6111 0.00085276 2.5997 0.001376 529.2996708768677 54.674 0.56974 54.674 54.398 54.968 0 55 24 4 0 0 0 0.20528 1 30222 30222 8.5933 3.3626 1 7748400 72689 10603 48576 49631 84612 84612 0.05683387148565089 VQRGGLSVMSI 11 Unmodified _VQRGGLSVMSI_ 0 0 0 REV__ENST00000409409.5_2_7:25163441-25163653:-|nuORF REV__ENST00000409409.5_2_7:25163441-25163653:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8805541992188 3 382.881502 1145.62268 -0.12051 -4.614E-05 -2.3168 -0.00088706 -2.4373 -0.0009332 382.8805292111585 35.603 0.27173 35.628 35.494 35.765 0.024971 19 12 2 0 0 0 0.61059 1 18819 18819 5.8681 0 1 3971200 + 72690 26688 48577 49632 84613 84613 0.05569146036987149 VQRHRVSL 8 Unmodified _VQRHRVSL_ 0 0 0 REV__nc|ENSG00000155926|Q13239-2|SLA REV__nc|ENSG00000155926|Q13239-2|SLA MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7993774414062 2 497.798875 993.583196 1.0381 0.00051678 -0.11824 -5.8858E-05 0.91989 0.00045792 497.79874867155087 34.845 0.33326 30.75 30.565 30.898 -4.0951 31 19 2 0 0 0 0.71527 1 20109 20109 15.847 2.3393 1 7762700 + 72691 21300 48578 49633 84614 84614 0.0861480686842242 VQRHRVSL 8 Unmodified _VQRHRVSL_ 0 0 0 REV__nc|ENSG00000155926|Q13239-2|SLA REV__nc|ENSG00000155926|Q13239-2|SLA MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 497.798875 993.583196 1.0381 0.00051678 -0.11824 -5.8858E-05 0.91989 0.00045792 497.79874867155087 34.845 0.33326 30.75 30.565 30.898 -4.0951 -0.05478 -0.00018327 NaN 15.847 31 19 2 NaN NaN NaN NaN 0 NaN NaN 0 7762700 + 72692 21300 48578 49633 0.0861480686842242 VQRRRLLF 8 Unmodified _VQRRRLLF_ 0 0 0 ENST00000551430.6_1_12:56685573-56694068:-|nuORF ENST00000551430.6_1_12:56685573-56694068:-|nuORF ENST00000551430.6_1_12:56685573-56694068:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2759399414062 2 544.345992 1086.67743 -0.59788 -0.00032545 -1.0304 -0.00056092 -1.6283 -0.00088637 544.3455442168543 102.34 0.37811 102.3 102.17 102.55 -0.045853 16 12 2 0 0 0 0.80975 1 56981 56981 0.79363 0 1 3080100 72693 15173 48579 49634 84615 84615 0.13755945690536464 VQRVQERSLRE 11 Unmodified _VQRVQERSLRE_ 0 0 0 REV__ENSG00000147119|ENST00000276055|CHST7 REV__ENSG00000147119|ENST00000276055|CHST7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 700.3916625976562 2 700.391856 1398.76916 NaN NaN NaN NaN NaN NaN NaN 102.46 1 102.35 101.85 102.85 -0.11613 0 0 0 0.9435 1 55903 55903 0 0 1 + 72694 20865 48580 49635 84616 84616 0.08572539526380751 VQRVRERI 8 Unmodified _VQRVRERI_ 0 0 0 REV__ENST00000564725.1_1_15:74290377-74317280:+|nuORF REV__ENST00000564725.1_1_15:74290377-74317280:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 528.7979736328125 2 528.325257 1054.63596 0.94818 0.00050095 0.17484 9.2372E-05 1.123 0.00059332 528.8261998785764 99.25 0.10395 93.075 93.009 93.113 -6.1757 9 5 2 0 0 0 8.7369 1 66018 66018 8.5933 0 1 12292000 + 72695 20474 48581 49636 84617 84617 0.11082764931234124 VQSCRRLRERR 11 Unmodified _VQSCRRLRERR_ 0 0 0 nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12;ENST00000504194.5_1_4:3388118-3416046:+|nuORF;ENST00000506998.5_1_4:3371967-3419414:+|nuORF;nc|ENSG00000159788|O14924-7|RGS12;nc|ENSG00000159788|O14924-6|RGS12;ENST00000508158.5_1_4:3386893-3430067:+|nuORF;nc|ENSG00000159788|O14924-2|RGS12;nc|ENSG00000159788|O14924-3|RGS12 nc|ENSG00000159788|O14924-5|RGS12 nc|ENSG00000159788|O14924-5|RGS12 MSMS AL20221201_MKP_PDAC_01 4 486.9440307617188 3 486.94427 1457.81098 NaN NaN NaN NaN NaN NaN NaN 34.372 1 30.276 29.776 30.776 -4.0951 0 0 0 0.89305 1 19809 19809 3.8459 1.0026 1 72696 6675 48582 49637 84618 84618 0.10038816733936073 VQSDMKHWPF 10 Unmodified _VQSDMKHWPF_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A;nc|ENSG00000204389|P0DMV8-2|HSPA1A ENSG00000109971|ENST00000534624|HSPA8;ENSG00000173110|ENST00000309758|HSPA6;ENST00000419827.2_1_7:10491071-10492091:+|nuORF;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.4883422851562 2 637.802965 1273.59138 NaN NaN NaN NaN NaN NaN NaN 59.282 1 59.229 58.729 59.729 -0.053062 0 0 0 0.96981 1 32304 32304 3.9444 0 1 72697 10277;2688;8286;13095 48583 49638 84619 84619 -0.03447426997126968 VQSEPGKLVG 10 Unmodified _VQSEPGKLVG_ 0 0 0 REV__ENSG00000204296|ENST00000533191|TSBP1 REV__ENSG00000204296|ENST00000533191|TSBP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2322998046875 2 507.284931 1012.55531 0.71645 0.00036344 -0.94324 -0.00047849 -0.22679 -0.00011505 507.28443874646507 38.545 0.1652 38.545 38.494 38.66 0 10 7 2 0 0 0 0.23412 1 20572 20572 9.3831 0 1 819160 + 72698 24155 48584 49639 84620 84620 0.04953439097675982 VQSGFVLFGL 10 Unmodified _VQSGFVLFGL_ 0 0 0 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 REV__nc|ENSG00000078795|Q9NZM6-2|PKD2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.2037353515625 3 356.20257 1065.58588 1.3754 0.00048991 -0.87142 -0.0003104 0.50395 0.00017951 356.2018894732223 43.128 0.43822 38.363 38.18 38.618 -4.7648 52 30 3 0 0 0 0.65502 1 26117 26117 4.1895 1.3462 1 30511000 + 72699 17636 48585 49640 84621 84621 0.05571217482724933 VQSPQPVP 8 Unmodified _VQSPQPVP_ 0 0 0 REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.2349853515625 2 426.23471 850.454868 0.84693 0.00036099 -0.55559 -0.00023681 0.29134 0.00012418 426.23459330456865 42.785 0.36102 42.785 42.586 42.947 0 38 18 3 0 0 0 0.28079 1 23122 23122 57.471 0 1 7993100 + 72700 28885 48586 49641 84622 84622 0.023658268346594014 VQSPQPVP 8 Unmodified _VQSPQPVP_ 0 0 0 REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4627685546875 1 851.462144 850.454868 0.78175 0.00066563 0.19002 0.0001618 0.97177 0.00082743 851.4621832941971 42.752 0.36102 42.752 42.586 42.947 0 43 18 3 0 0 0 0.12393 1 23226 23226 92.822 7.5501 1 8839500 + 72701 28885 48586 49641 84623 84623 0.023658268346594014 VQSPQPVP 8 Unmodified _VQSPQPVP_ 0 0 0 REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 851.4625244140625 1 851.462144 850.454868 0.82673 0.00070393 -0.24711 -0.0002104 0.57962 0.00049352 851.4620308113068 49.763 0.30716 44.224 44.05 44.357 -5.5391 32 19 2 0 0 0 0.17097 1 31175 31175 81.613 3.6287 1 21284000 + 72702 28885 48586 49641 84624 84624 0.023658268346594014 VQSPQPVP 8 Unmodified _VQSPQPVP_ 0 0 0 REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF REV__ENST00000563983.5_1_16:89788975-89789592:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 426.23471 850.454868 0.84693 0.00036099 -0.55559 -0.00023681 0.29134 0.00012418 426.23459330456865 42.785 0.36102 42.785 42.586 42.947 0 0 0 NaN 57.471 38 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7993100 + 72703 28885 48586 49641 0.023658268346594014 VQSSLIVLS 9 Unmodified _VQSSLIVLS_ 0 0 0 REV__nc|ENSG00000196792|Q13033-2|STRN3 REV__nc|ENSG00000196792|Q13033-2|STRN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 945.5637817382812 1 945.561524 944.554247 0.58362 0.00055185 -0.60312 -0.00057028 -0.019493 -1.8432E-05 945.5616006128789 67.996 0.24747 67.514 67.346 67.594 -0.48219 16 11 2 0 0 0 0.039985 1 37127 37127 49.933 2.1843 1 1525500 + 72704 29884 48587 49642 84625 84625 0.07975224728750163 VQSTSELRQCL 11 Unmodified _VQSTSELRQCL_ 0 0 0 REV__ENST00000485797.2_1_13:77566979-77589697:-|nuORF REV__ENST00000485797.2_1_13:77566979-77589697:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.32177734375 2 632.321719 1262.62889 0.34417 0.00021763 0.27161 0.00017175 0.61578 0.00038937 632.3216711917613 37.028 0.21863 37.028 36.878 37.097 0 17 10 2 0 0 0 0.68427 1 19660 19660 5.7319 0 1 2313800 + 72705 27785 48588 49643 84626 84626 0.008076194778368517 VQSVDEKTL 9 Unmodified _VQSVDEKTL_ 0 0 0 ENSG00000159445|ENST00000368814|THEM4 ENSG00000159445|ENST00000368814|THEM4 ENSG00000159445|ENST00000368814|THEM4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.2718811035156 2 509.774396 1017.53424 0.32587 0.00016612 -1.8945 -0.00096575 -1.5686 -0.00079963 509.7732722155827 27.194 0.1987 24.158 24.04 24.239 -3.0365 11 9 2 0 0 0 0.15672 1 15017 15017 20.454 7.9221 1 7148300 72706 6656 48589 49644 84627 84627 0.026174289981327092 VQSYKDVF 8 Unmodified _VQSYKDVF_ 0 0 0 nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-3|TTC21A;ENST00000481734.1_1_3:39174545-39175936:+|nuORF nc|ENSG00000168026|Q8NDW8-6|TTC21A nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2547302246094 2 493.2531 984.491647 0.6718 0.00033137 -0.11667 -5.7545E-05 0.55514 0.00027382 493.25314056122215 36.581 0.3017 36.581 36.43 36.732 0 38 14 3 0 0 0 0.50673 1 19487 19487 34.102 1.797 1 26323000 72707 7705 48590 49645 84628 84628 -0.0012192133942789951 VQTAVINVF 9 Unmodified _VQTAVINVF_ 0 0 0 ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-4|PRR5L ENSG00000135362|ENST00000530639|PRR5L ENSG00000135362|ENST00000530639|PRR5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.785400390625 2 495.784567 989.554582 0.76238 0.00037798 -0.16808 -8.3334E-05 0.5943 0.00029464 495.78454921906587 73.468 0.40739 72.992 72.758 73.166 -0.47588 54 17 4 0 0 0 0.009483 2 40136 40136;40243 81.89 25.713 1 7932200 72708 4695 48591 49646 84629;84630 84629 0.0593864444861083 VQTAVINVF 9 Unmodified _VQTAVINVF_ 0 0 0 ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-4|PRR5L ENSG00000135362|ENST00000530639|PRR5L ENSG00000135362|ENST00000530639|PRR5L MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7860412597656 2 495.784567 989.554582 0.72066 0.00035729 0.47852 0.00023724 1.1992 0.00059453 495.78476950789843 80.55 0.47225 74.375 74.152 74.624 -6.1757 44 25 2 0 0 0 0.0082353 2 52797 52797;52918 96.111 38.389 1 27330000 72709 4695 48591 49646 84631;84632 84631 0.0593864444861083 VQTAVINVF 9 Unmodified _VQTAVINVF_ 0 0 0 ENSG00000135362|ENST00000530639|PRR5L;nc|ENSG00000135362|Q6MZQ0-4|PRR5L ENSG00000135362|ENST00000530639|PRR5L ENSG00000135362|ENST00000530639|PRR5L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 495.784567 989.554582 0.29484 0.00014618 -0.78176 -0.00038759 -0.48693 -0.00024141 495.78432513429107 72.97 0.14737 73.012 72.901 73.048 0.041725 0.0097559 -0.00046605 NaN 81.89 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2224400 72710 4695 48591 49646 0.0593864444861083 VQTERQIYI 9 Unmodified _VQTERQIYI_ 0 0 0 REV__ENSG00000204514|ENST00000435989|ZNF814;REV__nc|ENSG00000269343|E7ETH6|ZNF587B REV__nc|ENSG00000269343|E7ETH6|ZNF587B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8801574707031 3 383.880267 1148.61897 -0.36592 -0.00014047 0.61764 0.0002371 0.25171 9.6628E-05 383.8804775564005 23.796 0.2769 23.796 23.659 23.936 0 34 13 3 0 0 0 0.49272 1 12137 12137 4.897 0 1 3614800 + 72711 24176;24623 48592 49647 84633 84633 0.050607995347718315 VQTETVYLF 9 Unmodified _VQTETVYLF_ 0 0 0 ENSG00000128585|ENST00000352689|MKLN1;ENST00000494785.5_1_7:131012658-131163543:+|nuORF;nc|ENSG00000128585|Q9UL63-2|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 ENSG00000128585|ENST00000352689|MKLN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2876586914062 2 550.28714 1098.55973 0.38934 0.00021425 0.65028 0.00035784 1.0396 0.00057209 550.2873074641072 75.667 0.38139 75.667 75.453 75.834 0 33 15 3 0 0 0 0.41742 1 42113 42113 11.64 4.9171 1 1085500 72712 4072 48593 49648 84634 84634 0.01438903520556778 VQTEVNREL 9 Unmodified _VQTEVNREL_ 0 0 0 ENSG00000117475|ENST00000367808|BLZF1 ENSG00000117475|ENST00000367808|BLZF1 ENSG00000117475|ENST00000367808|BLZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2900390625 2 544.290745 1086.56694 -0.5851 -0.00031847 0.7355 0.00040032 0.15039 8.1857E-05 544.2911841713712 27.828 0.20403 27.828 27.741 27.945 0 15 9 2 0 0 0 0.010301 1 14350 14350 79.596 20.228 1 2391000 72713 3307 48594 49649 84635 84635 0.027116361209891693 VQTHALYV 8 Unmodified _VQTHALYV_ 0 0 0 REV__ENST00000500949.6_1_15:41593990-41594119:+|nuORF REV__ENST00000500949.6_1_15:41593990-41594119:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7550048828125 2 465.75581 929.497067 0.040995 1.9094E-05 -1.7427 -0.00081168 -1.7017 -0.00079259 465.7551204546795 25.157 0.19371 25.157 25.067 25.26 0 12 9 2 0 0 0 0.80975 1 12895 12895 0.79363 0 1 661760 + 72714 28010 48595 49650 84636 84636 0.029498022430288984 VQTKNYYK 8 Unmodified _VQTKNYYK_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.754150390625 2 522.279649 1042.54475 0.053917 2.816E-05 -1.6949 -0.00088522 -1.641 -0.00085706 522.2798502644354 52.059 0.1994 52.059 51.976 52.175 0 12 8 2 0 0 0 8.7369 1 28783 28783 19.439 0 1 2180000 72715 641 48596 49651 84637 84637 0.025174564432063562 VQTLAKPRL 9 Unmodified _VQTLAKPRL_ 0 0 0 REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2 REV__nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2 MSMS AL20221201_MKP_PDAC_01 4 513.3255004882812 2 513.326934 1024.63931 NaN NaN NaN NaN NaN NaN NaN 103.82 1 97.641 97.141 98.141 -6.1757 0 0 0 0.84737 1 69575 69575 1.8442 0 1 + 72716 19050 48597 49652 84638 84638 0.12798014985219197 VQTLRDRLPE 10 Unmodified _VQTLRDRLPE_ 0 0 0 ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG ENSG00000171219|ENST00000342711|CDC42BPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.846435546875 2 613.846219 1225.67788 0.68526 0.00042064 2.5964 0.0015938 3.2817 0.0020144 614.3492892098158 69.37 0.41901 69.401 69.227 69.646 0.030914 39 23 2 0 0 0 0.38026 1 38196 38196 20.415 3.3016 1 18200000 72717 8079 48598 49653 84639 84639 0.07407275829086757 VQTLSKEI 8 Unmodified _VQTLSKEI_ 0 0 0 REV__ENST00000486363.1_1_21:33641984-33642827:-|nuORF REV__ENST00000486363.1_1_21:33641984-33642827:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 918.52734375 1 917.530224 916.522947 0.047439 4.3527E-05 -1.6115 -0.0014786 -1.5641 -0.0014351 917.5300528319287 70.627 0.38605 70.15 70.025 70.411 -0.47736 42 29 2 0 0 0 0.63229 1 38614 38614 23.148 0 1 6176400 + 72718 27803 48599 49654 84640 84640 0.061346516946514384 VQTTKLAV 8 Unmodified _VQTTKLAV_ 0 0 0 ENST00000395002.6_1_4:89744147-89744438:-|nuORF ENST00000395002.6_1_4:89744147-89744438:-|nuORF ENST00000395002.6_1_4:89744147-89744438:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.2654113769531 2 430.26601 858.517468 NaN NaN NaN NaN NaN NaN NaN 88.694 1 82.518 82.018 83.018 -6.1757 0 0 0 0.97444 1 58526 58526 2.0598 0 1 72719 12756 48600 49655 84641 84641 0.08254972902830104 VQVEISRCLF 10 Unmodified _VQVEISRCLF_ 0 0 0 ENSG00000184995|ENST00000448696|IFNE ENSG00000184995|ENST00000448696|IFNE ENSG00000184995|ENST00000448696|IFNE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.325927734375 2 597.320991 1192.62743 NaN NaN NaN NaN NaN NaN NaN 85.343 1 84.842 84.342 85.342 -0.5015 0 0 0 0.64375 1 46696 46696 19.257 2.1441 1 72720 9313 48601 49656 84642 84642 0.03882030179715912 VQVKRPRKVVI 11 Unmodified _VQVKRPRKVVI_ 0 0 0 REV__nc|ENSG00000119139|Q9UDY2-5|TJP2 REV__nc|ENSG00000119139|Q9UDY2-5|TJP2 MSMS AL20221201_MKP_PDAC_01 4 441.2974548339844 3 441.297868 1320.87177 NaN NaN NaN NaN NaN NaN NaN 108.84 1 102.67 102.17 103.17 -6.1757 0 0 0 0.94337 1 72721 72721 0.094841 0 1 + 72721 19182 48602 49657 84643 84643 0.22417277055819795 VQVLRRDSL 9 Unmodified _VQVLRRDSL_ 0 0 0 ENST00000379066.5_1_2:37543393-37543606:-|nuORF ENST00000379066.5_1_2:37543393-37543606:-|nuORF ENST00000379066.5_1_2:37543393-37543606:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2178039550781 3 362.552374 1084.63529 -0.029177 -1.0578E-05 1.7252 0.00062549 1.6961 0.00061491 362.55295126503523 16.394 0.1112 16.399 16.338 16.449 0.0050545 11 6 2 0 0 0 0.21473 1 8224 8224 1.0715 0.29493 1 438590 72722 12558 48603 49658 84644 84644 0.09635925491511443 VQVLRRDSL 9 Unmodified _VQVLRRDSL_ 0 0 0 ENST00000379066.5_1_2:37543393-37543606:-|nuORF ENST00000379066.5_1_2:37543393-37543606:-|nuORF ENST00000379066.5_1_2:37543393-37543606:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 362.552374 1084.63529 -0.57593 -0.0002088 1.0906 0.00039538 0.51463 0.00018658 362.5527177231663 16.771 0.074203 16.772 16.735 16.81 0.0010529 0.18668 -0.00027359 NaN 1.0715 25 21 2 NaN NaN NaN NaN 0 NaN NaN 0 266340 72723 12558 48603 49658 0.09635925491511443 VQVRIAFP 8 Unmodified _VQVRIAFP_ 0 0 0 ENST00000503670.5_1_6:30854463-30854742:+|nuORF ENST00000503670.5_1_6:30854463-30854742:+|nuORF ENST00000503670.5_1_6:30854463-30854742:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2817687988281 2 465.281995 928.549437 0.30793 0.00014328 -0.60533 -0.00028165 -0.29739 -0.00013837 465.28183317926084 78.114 0.29118 78.166 78.011 78.302 0.052452 22 11 2 0 0 0 0.26159 1 43134 43134 60.39 3.8483 1 3305500 72724 14474 48604 49659 84645 84645 0.08230385376646154 VQWGWAWRH 9 Unmodified _VQWGWAWRH_ 0 0 0 ENST00000587439.5_1_19:36108795-36110661:+|nuORF ENST00000587439.5_1_19:36108795-36110661:+|nuORF ENST00000587439.5_1_19:36108795-36110661:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2057495117188 3 409.205308 1224.5941 -0.32286 -0.00013212 0.57874 0.00023682 0.25588 0.00010471 409.53976330707405 37.545 0.2131 37.562 37.46 37.673 0.01704 22 10 3 0 0 0 0.55144 1 19939 19939 2.4985 0.59211 1 7439400 72725 15637 48605 49660 84646 84646 -0.009217907573201956 VQWQFWKFLSE 11 Unmodified _VQWQFWKFLSE_ 0 0 0 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 REV__nc|ENSG00000216937|Q96M83-2|CCDC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.9228820800781 3 499.922355 1496.74524 NaN NaN NaN NaN NaN NaN NaN 13.654 1 13.662 13.162 14.162 0.0073986 0 0 0 0.94337 1 6736 6736 0.094841 0 1 + 72726 24349 48606 49661 84647 84647 0.016733060400611066 VQWWRTAF 8 Unmodified _VQWWRTAF_ 0 0 0 nc|ENSG00000128463|Q5J8M3-2|EMC4 nc|ENSG00000128463|Q5J8M3-2|EMC4 nc|ENSG00000128463|Q5J8M3-2|EMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7892456054688 2 547.282526 1092.5505 0.099576 5.4496E-05 -0.60229 -0.00032962 -0.50271 -0.00027513 547.2820230572892 93.247 1.5159 87.071 86.382 87.898 -6.1757 398 98 6 0 0 0 0.77907 2 61466 61466;62116 10.183 10.183 1 803710000 72727 16179 48607 49662 84648;84649 84648 0.007925997455686229 VQYAKEHLF 9 Unmodified _VQYAKEHLF_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8701782226562 3 378.869591 1133.58694 0.44747 0.00016953 -0.073874 -2.7989E-05 0.37359 0.00014154 378.86952102601185 30.763 0.19638 30.661 30.571 30.767 -0.10269 12 7 2 0 0 0 0.38785 1 16006 16006 13.042 4.2971 1 1611200 + 72728 18683 48608 49663 84650 84650 0.025494318515939085 VQYAKEHLF 9 Unmodified _VQYAKEHLF_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 378.869591 1133.58694 0.44747 0.00016953 -0.073874 -2.7989E-05 0.37359 0.00014154 378.86952102601185 30.763 0.19638 30.661 30.571 30.767 -0.10269 0.033006 -0.00038541 NaN 13.042 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1611200 + 72729 18683 48608 49663 0.025494318515939085 VQYAKEHLF 9 Unmodified _VQYAKEHLF_ 0 0 0 REV__ENSG00000109991|ENST00000263314|P2RX3 REV__ENSG00000109991|ENST00000263314|P2RX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 378.869591 1133.58694 -0.11732 -4.4448E-05 0.87623 0.00033198 0.75891 0.00028753 379.20416287923905 30.564 0.21283 30.595 30.477 30.69 0.030106 -0.033006 0.00069449 NaN 13.042 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1746800 + 72730 18683 48608 49663 0.025494318515939085 VQYIYQSVEPA 11 Unmodified _VQYIYQSVEPA_ 0 0 0 REV__nc|ENSG00000006125|P63010-3|AP2B1 REV__nc|ENSG00000006125|P63010-3|AP2B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 432.9302978515625 3 432.887199 1295.63977 0.9543 0.0004131 -1.0232 -0.00044292 -0.068885 -2.9819E-05 433.22235105889024 66.086 0.17134 59.91 59.805 59.977 -6.1757 10 9 2 0 0 0 0.30551 1 42937 42937 2.6312 2.223 1 9815700 + 72731 16985 48609 49664 84651 84651 0.0037734512375209306 VQYLHSLDLI 10 Unmodified _VQYLHSLDLI_ 0 0 0 ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG ENSG00000165059|ENST00000377276|PRKACG MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.8933715820312 3 400.892284 1199.65502 0.92649 0.00037142 0.073467 2.9452E-05 0.99996 0.00040087 400.89249459974343 18.831 0.46797 16.209 15.971 16.439 -2.6215 101 34 4 0 0 0 0.69377 1 9845 9845 1.7423 0.14999 1 16979000 72732 7283 48610 49665 84652 84652 0.06318256711620052 VQYSLIRF 8 Unmodified _VQYSLIRF_ 0 0 0 REV__nc|ENSG00000148735|Q5SXH7|PLEKHS1 REV__nc|ENSG00000148735|Q5SXH7|PLEKHS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3009033203125 2 513.292559 1024.57057 0.87063 0.00044689 1.869 0.00095933 2.7396 0.0014062 513.2923778624712 81.253 1.8722 75.078 74.566 76.438 -6.1757 182 105 3 0 0 0 0.75262 1 53756 53756 12.532 0.89125 1 64198000 + 72733 29696 48611 49666 84653 84653 0.05926350685513171 VRAARPPA 8 Unmodified _VRAARPPA_ 0 0 0 ENST00000496333.5_1_2:24714789-24715008:+|nuORF ENST00000496333.5_1_2:24714789-24715008:+|nuORF ENST00000496333.5_1_2:24714789-24715008:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 419.25732421875 2 419.256311 836.49807 NaN NaN NaN NaN NaN NaN NaN 80.3 1 74.124 73.624 74.624 -6.1757 0 0 0 0.90769 1 52680 52680 18.135 0 1 72734 14366 48612 49667 84654 84654 0.07328061402597541 VRALHQHY 8 Unmodified _VRALHQHY_ 0 0 0 ENSG00000153930|ENST00000682825|ANKFN1;nc|ENSG00000153930|Q8N957-2|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 ENSG00000153930|ENST00000682825|ANKFN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.27783203125 2 512.277775 1022.541 NaN NaN NaN NaN NaN NaN NaN 20.614 1 20.614 20.114 21.114 0 0 0 0 0.97444 1 10382 10382 2.5775 0 1 72735 6282 48613 49668 84655 84655 0.030628314600335216 VRALKLHPK 9 Unmodified _VRALKLHPK_ 0 0 0 REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP REV__nc|ENSG00000171681|Q6VMQ6-5|ATF7IP MSMS AL20221201_MKP_PDAC_01 4 531.35107421875 2 531.350743 1060.68693 NaN NaN NaN NaN NaN NaN NaN 107.51 1 101.33 100.83 101.83 -6.1757 0 0 0 0.8622 1 71902 71902 0 0 1 + 72736 22589 48614 49669 84656 84656 0.15901713976063547 VRAPKFPV 8 Unmodified _VRAPKFPV_ 0 0 0 REV__ENSG00000122729|ENST00000309951|ACO1 REV__ENSG00000122729|ENST00000309951|ACO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2851257324219 2 457.284537 912.554522 1.0372 0.00047428 -0.9328 -0.00042655 0.10437 4.7727E-05 457.2840245750545 58 0.25719 57.934 57.775 58.033 -0.066032 34 12 4 0 0 0 0.61462 1 31565 31565 24.674 0 1 6600400 + 72737 19356 48615 49670 84657 84657 0.09474689239277723 VRASNPGQF 9 Unmodified _VRASNPGQF_ 0 0 0 MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF;ENSG00000166268|ENST00000552032|MYRFL MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant;ENSG00000166268|ENST00000552032|MYRFL MYRF|p.R983Pfs*15|1|0.21|ENSG00000124920|chr11:61781753-61781754|-/C|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2542724609375 2 488.253966 974.493378 -0.31371 -0.00015317 0.20394 9.9574E-05 -0.10977 -5.3596E-05 488.253991938124 19.804 0.37142 19.804 19.637 20.008 0 113 51 3 0 0 0 0.46501 1 9846 9846 9.3831 0 1 4608600 72738 3825;7462 48616 49671 84658 84658 0.005111324691938535 VRCAMLDLPG 10 Unmodified _VRCAMLDLPG_ 0 0 0 REV__nc|ENSG00000141401|O14732-2|IMPA2 REV__nc|ENSG00000141401|O14732-2|IMPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7763671875 2 537.775362 1073.53617 0.27793 0.00014947 0.71348 0.00038369 0.99141 0.00053316 537.775794940825 63.462 0.60573 63.462 63.244 63.85 0 78 29 4 0 0 0 0.45406 1 35352 35352 27.629 2.6378 1 20310000 + 72739 20531 48617 49672 84659 84659 0.0023444321075203334 VRCAMLDLPG 10 Unmodified _VRCAMLDLPG_ 0 0 0 REV__nc|ENSG00000141401|O14732-2|IMPA2 REV__nc|ENSG00000141401|O14732-2|IMPA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 537.775362 1073.53617 0.27793 0.00014947 0.71348 0.00038369 0.99141 0.00053316 537.775794940825 63.462 0.60573 63.462 63.244 63.85 0 0.00062558 -0.00032358 NaN 27.629 78 29 4 NaN NaN NaN NaN 0 NaN NaN 0 20310000 + 72740 20531 48617 49672 0.0023444321075203334 VRCWQWKG 8 Unmodified _VRCWQWKG_ 0 0 0 ENST00000368494.3_1_6:117996685-117996769:+|nuORF ENST00000368494.3_1_6:117996685-117996769:+|nuORF ENST00000368494.3_1_6:117996685-117996769:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7705688476562 2 531.768729 1061.5229 NaN NaN NaN NaN NaN NaN NaN 5.0982 1 5.0207 4.5207 5.5207 -0.07749 0 0 0 0.97444 1 2516 2516 0.69038 0 1 72741 12271 48618 49673 84660 84660 -0.005396267863261528 VRDARNGLL 9 Unmodified _VRDARNGLL_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2961120605469 2 507.296165 1012.57778 0.1024 5.1945E-05 0.094309 4.7842E-05 0.1967 9.9787E-05 507.29619836749333 23.684 0.50928 20.857 20.632 21.142 -2.8273 89 30 4 0 0 0 0.25681 1 12875 12875 19.257 19.257 1 52179000 72742 2169 48619 49674 84661 84661 0.07199083285945562 VRDLMPKTI 9 Unmodified _VRDLMPKTI_ 0 0 0 nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:131010813-131013220:+|nuORF nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000106976|Q05193-5|DNM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.2108154296875 3 358.21096 1071.61105 0.63753 0.00022837 -1.2712 -0.00045536 -0.63367 -0.00022699 358.2103532997455 29.98 0.25776 29.9 29.77 30.027 -0.080429 18 9 3 0 0 0 0.41742 1 15540 15540 7.609 0 1 4691600 72743 2467 48620 49675 84662 84662 0.07810949013628488 VRDNLVII 8 Unmodified _VRDNLVII_ 0 0 0 REV__nc|ENSG00000136811|Q5BJF6-9|ODF2 REV__nc|ENSG00000136811|Q5BJF6-9|ODF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2931213378906 2 471.292559 940.570566 0.99595 0.00046938 0.031399 1.4798E-05 1.0273 0.00048418 471.2923425069011 50.655 0.42808 45.006 44.804 45.232 -5.649 51 26 3 0 0 0 0.52622 1 31701 31701 32.305 0 1 53079000 + 72744 20182 48621 49676 84663 84663 0.09790350685523208 VRDSLHGYI 9 Unmodified _VRDSLHGYI_ 0 0 0 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 REV__nc|ENSG00000197658|Q8N4F4-1|SLC22A24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7827758789062 2 530.282723 1058.55089 1.162 0.00061621 1.6848 0.0008934 2.8468 0.0015096 530.2829059943753 47.354 0.18629 42.274 42.196 42.382 -5.0805 12 10 2 0 0 0 0.32871 1 29362 29362 15.847 2.8047 1 8539000 + 72745 23952 48622 49677 84664 84664 0.023959746747550525 VRDVYWKI 8 Unmodified _VRDVYWKI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.8271789550781 3 360.206315 1077.59712 1.1444 0.00041223 0.3179 0.00011451 1.4623 0.00052674 360.20644375732167 45.066 0.35037 40.214 40.036 40.387 -4.852 41 22 2 0 0 0 8.7369 1 27729 27729 8.7454 8.7454 1 20554000 72746 3132 48623 49678 84665 84665 0.06142039576843672 VREDRLTL 8 Unmodified _VREDRLTL_ 0 0 0 ENSG00000140983|ENST00000315082|RHOT2;ENST00000569358.5_1_16:720470-721765:+|nuORF;ENST00000562333.5_1_16:720150-721765:+|nuORF;nc|ENSG00000140983|Q8IXI1-2|RHOT2;ENST00000568636.5_1_16:720150-721765:+|nuORF;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF;ENST00000602564.5_1_16:719540-721765:+|nuORF ENSG00000140983|ENST00000315082|RHOT2 ENSG00000140983|ENST00000315082|RHOT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2879333496094 2 501.290548 1000.56654 0.16492 8.2673E-05 0.18921 9.4849E-05 0.35413 0.00017752 501.2905938188285 89.135 0.60667 88.631 88.371 88.978 -0.50423 72 26 4 0 0 0 0.80311 1 48860 48860 4.756 0 1 6092800 72747 5289 48624 49679 84666 84666 0.06628261191792717 VREIQKRLTSE 11 Unmodified _VREIQKRLTSE_ 0 0 0 REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.9315490722656 3 453.596531 1357.76776 NaN NaN NaN NaN NaN NaN NaN 17.949 1 17.949 17.449 18.449 0 0 0 0 0.94181 1 8888 8888 1.2148 0 1 + 72748 24498 48625 49680 84667 84667 0.1031890543767986 VRELLQLW 8 Unmodified _VRELLQLW_ 0 0 0 ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 ENSG00000184571|ENST00000616349|PIWIL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8785705566406 3 352.878198 1055.61277 NaN NaN NaN NaN NaN NaN NaN 40.454 1 40.454 39.954 40.954 0 0 0 0 0.97444 1 21741 21741 0.40072 0 1 72749 9271 48626 49681 84668 84668 0.08718326093912765 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2749633789062 2 450.274701 898.534849 0.39309 0.000177 0.28952 0.00013036 0.68261 0.00030736 450.2747174023538 81.944 0.4701 81.944 81.737 82.207 0 64 25 3 0 0 0 0.81107 3 45397 45397;45492;45587 0 0 1 2691300 72750 8141 48627 49682 84669;84670;84671 84669 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2756042480469 2 450.274701 898.534849 0.41122 0.00018516 1.0319 0.00046464 1.4431 0.0006498 450.2748832723471 85.803 0.4287 85.301 85.143 85.572 -0.5015 31 17 2 0 0 0 0.81107 1 47062 47062 0 0 1 577490 72751 8141 48627 49682 84672 84672 0.08152313228538333 VRELRGLG 8 Unmodified _VRELRGLG_ 0 0 0 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 ENSG00000171793|ENST00000650070|CTPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2749328613281 2 450.274701 898.534849 0.68631 0.00030903 0.27361 0.0001232 0.95992 0.00043223 450.274726032029 92.757 0.66403 86.581 86.284 86.948 -6.1757 102 41 3 0 0 0 0.81107 1 61315 61315 0 0 1 225280000 72752 8141 48627 49682 84673 84673 0.08152313228538333 VREPCGALHMG 11 Unmodified _VREPCGALHMG_ 0 0 0 REV__ENST00000410018.5_2_19:38827969-38828032:+|nuORF REV__ENST00000410018.5_2_19:38827969-38828032:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2798461914062 2 585.281343 1168.54813 NaN NaN NaN NaN NaN NaN NaN 26.203 1 26.171 25.671 26.671 -0.031708 0 0 0 0.93933 1 13466 13466 2.9952 0.93549 1 + 72753 26705 48628 49683 84674 84674 -0.02939940046076117 VREPRSRKKRR 11 Unmodified _VREPRSRKKRR_ 0 0 0 ENST00000303531.11_2_16:24124355-24135249:+|nuORF ENST00000303531.11_2_16:24124355-24135249:+|nuORF ENST00000303531.11_2_16:24124355-24135249:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 734.4578857421875 2 734.458199 1466.90185 NaN NaN NaN NaN NaN NaN NaN 18.879 1 18.885 18.385 19.385 0.0060463 0 0 0 0.9435 1 9583 9583 0 0 1 72754 11596 48629 49684 84675 84675 0.18707028773701495 VRFGPGVAF 9 Unmodified _VRFGPGVAF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 475.2665100097656 2 475.266345 948.518136 0.24545 0.00011665 0.043189 2.0526E-05 0.28864 0.00013718 475.26637799338863 59.503 0.36131 59.45 59.273 59.634 -0.053062 59 18 4 0 0 0 0.095405 2 32479 32371;32479 34.102 17.16 1 89173000 + 72755 167 48630 49685 84676;84677 84677 0.04181812342562807 VRFGPGVAF 9 Unmodified _VRFGPGVAF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.2676086425781 2 475.266345 948.518136 0.66393 0.00031554 0.2075 9.8619E-05 0.87144 0.00041416 475.266427765657 65.138 0.55108 58.962 58.715 59.266 -6.1757 72 30 3 0 0 0 0.038285 3 42148 42148;42278;42406 50.855 27.707 1 62516000 + 72756 167 48630 49685 84678;84679;84680 84678 0.04181812342562807 VRFHLLILAI 10 Unmodified _VRFHLLILAI_ 0 0 0 REV__nc|ENSG00000186377|Q8N118-3|CYP4X1 REV__nc|ENSG00000186377|Q8N118-3|CYP4X1 MSMS AL20221201_MKP_PDAC_01 4 597.8900146484375 2 597.889701 1193.76485 NaN NaN NaN NaN NaN NaN NaN 107.81 1 101.64 101.14 102.14 -6.1757 0 0 0 1.0061 1 72085 72085 0 0 1 + 72757 23571 48631 49686 84681 84681 0.17571726841492818 VRFHPLLP 8 Unmodified _VRFHPLLP_ 0 0 0 ENST00000493776.1_1_19:12606110-12624574:-|nuORF ENST00000493776.1_1_19:12606110-12624574:-|nuORF ENST00000493776.1_1_19:12606110-12624574:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.7981262207031 2 489.797812 977.581071 NaN NaN NaN NaN NaN NaN NaN 102.44 1 102.39 101.89 102.89 -0.045853 0 0 0 0.97444 1 56899 56899 0 0 1 72758 14324 48632 49687 84682 84682 0.0913837813061491 VRFIRMLRF 9 Unmodified _VRFIRMLRF_ 0 0 0 REV__ENSG00000124134|ENST00000537075|KCNS1 REV__ENSG00000124134|ENST00000537075|KCNS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3731689453125 2 619.371153 1236.72775 2.099 0.0013001 1.1716 0.00072566 3.2707 0.0020257 619.371772792613 93.56 0.73774 93.583 93.354 94.091 0.022987 51 29 3 0 0 0 0.61256 1 52097 52097 0.6015 0 1 3129400 + 72759 19416 48633 49688 84683 84683 0.11885732024052231 VRFPHYVYW 9 Unmodified _VRFPHYVYW_ 0 0 0 ENST00000436842.5_1_2:3593081-3593171:-|nuORF ENST00000436842.5_1_2:3593081-3593171:-|nuORF ENST00000436842.5_1_2:3593081-3593171:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.822998046875 2 633.824558 1265.63456 NaN NaN NaN NaN NaN NaN NaN 74.125 1 73.649 73.149 74.149 -0.47588 0 0 0 0.85737 1 40571 40571 0.6015 0.076735 1 72760 13338 48634 49689 84684 84684 0.012371308424690142 VRGAPFHI 8 Unmodified _VRGAPFHI_ 0 0 0 ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.7590026855469 2 448.758687 895.502821 0.54835 0.00024608 1.565 0.00070229 2.1133 0.00094837 448.75894218932524 72.253 0.38353 72.295 72.21 72.594 0.041725 35 17 3 0 0 0 0.80975 1 39806 39806 0.79363 0 1 6206100 72761 11974 48635 49690 84685 84685 0.05088945545378465 VRGAPFHI 8 Unmodified _VRGAPFHI_ 0 0 0 ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF ENST00000341901.4_1_16:28304063-28304252:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 448.758687 895.502821 0.58269 0.00026149 2.0595 0.00092422 2.6422 0.0011857 448.7594972030796 72.845 0.17812 72.369 72.295 72.473 -0.47588 -0.036555 0.00011742 NaN 0.79363 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 366770 72762 11974 48635 49690 0.05088945545378465 VRGEARLI 8 Unmodified _VRGEARLI_ 0 0 0 REV__ENSG00000197653|ENST00000673944|DNAH10 REV__ENSG00000197653|ENST00000673944|DNAH10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2818603515625 2 457.282526 912.550499 0.76329 0.00034904 -1.4808 -0.00067717 -0.71756 -0.00032813 457.2819022107636 38.979 0.24648 34.528 34.399 34.645 -4.4509 22 15 2 0 0 0 0.54555 1 23068 23068 30.637 0 1 6877200 + 72763 23951 48636 49691 84686 84686 0.09072599745559273 VRGHKLFKSEM 11 Unmodified _VRGHKLFKSEM_ 0 0 0 REV__ENST00000549651.1_1_12:70636479-70636515:-|nuORF REV__ENST00000549651.1_1_12:70636479-70636515:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2413330078125 3 444.579935 1330.71798 0.695 0.00030898 0.26015 0.00011566 0.95515 0.00042464 444.58011963225124 56.685 0.20296 56.616 56.517 56.72 -0.068741 24 9 3 0 0 0 0.30587 1 30886 30886 1.2148 0.51716 1 6095000 + 72764 28697 48637 49692 84687 84687 0.0658449922800628 VRGKICWL 8 Unmodified _VRGKICWL_ 0 0 0 ENST00000458113.6_1_17:15983677-15983818:-|nuORF ENST00000458113.6_1_17:15983677-15983818:-|nuORF ENST00000458113.6_1_17:15983677-15983818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7856140136719 2 487.783847 973.553142 0.57249 0.00027925 -0.59594 -0.00029069 -0.023443 -1.1435E-05 487.78347962725053 91.42 0.3445 90.926 90.712 91.056 -0.49458 25 15 2 0 0 0 0.80975 1 49899 49899 0.79363 0 1 512410 72765 13624 48638 49693 84688 84688 0.06530731878854112 VRGLAWVPLL 10 Unmodified _VRGLAWVPLL_ 0 0 0 REV__ENST00000344651.4_1_12:121159274-121159475:+|nuORF REV__ENST00000344651.4_1_12:121159274-121159475:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5564270019531 3 375.237726 1122.69135 -0.10005 -3.7544E-05 1.2978 0.00048697 1.1977 0.00044942 375.2383416515688 30.309 0.22688 30.339 30.207 30.434 0.030106 20 9 3 0 0 0 0.23922 1 15832 15832 1.9064 1.2087 1 1582100 + 72766 25745 48639 49694 84689 84689 0.13491178398976444 VRGPRAAA 8 Unmodified _VRGPRAAA_ 0 0 0 REV__nc|ENSG00000010438|P35030|PRSS3 REV__nc|ENSG00000010438|P35030|PRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2401123046875 2 399.240661 796.46677 0.14521 5.7974E-05 -1.3841 -0.00055258 -1.2389 -0.00049461 399.2397317915435 67.435 0.48959 67.453 67.258 67.748 0.018036 41 24 2 0 0 0 0.81107 1 37007 37007 0 0 1 9165200 + 72767 29482 48640 49695 84690 84690 0.060394883685034984 VRGPRAAA 8 Unmodified _VRGPRAAA_ 0 0 0 REV__nc|ENSG00000010438|P35030|PRSS3 REV__nc|ENSG00000010438|P35030|PRSS3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.7993469238281 2 399.240661 796.46677 0.14521 5.7974E-05 -1.3841 -0.00055258 -1.2389 -0.00049461 399.2397317915435 67.435 0.48959 67.453 67.258 67.748 0.018036 41 24 2 0 0 0 8.7369 1 36912 36912 0 0 1 9165200 + 72768 29482 48640 49695 84691 84691 0.060394883685034984 VRGRKPLRLL 10 Unmodified _VRGRKPLRLL_ 0 0 0 REV__ENST00000548015.1_1_12:53343858-53343960:+|nuORF REV__ENST00000548015.1_1_12:53343858-53343960:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.40966796875 2 604.409124 1206.80369 1.085 0.0006558 -2.2996 -0.0013899 -1.2146 -0.00073411 604.4075094786031 103.58 0.072266 97.404 97.378 97.45 -6.1757 11 8 2 0 0 0 0.72607 1 69455 69455 0 0 1 4792700 + 72769 28679 48641 49696 84692 84692 0.20856452195835118 VRGRQRIF 8 Unmodified _VRGRQRIF_ 0 0 0 REV__ENSG00000198171|ENST00000354488|DDRGK1 REV__ENSG00000198171|ENST00000354488|DDRGK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.314453125 2 516.314692 1030.61483 0.81616 0.00042139 -1.0317 -0.00053271 -0.21559 -0.00011131 516.3140698874809 99.174 0.33302 92.998 92.841 93.174 -6.1757 57 19 4 0 0 0 0.80624 1 65909 65909 2.8892 0 1 346290000 + 72770 23997 48642 49697 84693 84693 0.10074799622339015 VRGVCQCHE 9 Unmodified _VRGVCQCHE_ 0 0 0 ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN ENSG00000120332|ENST00000239462|TNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7315063476562 2 515.731486 1029.44842 0.25693 0.0001325 0.13138 6.7759E-05 0.38831 0.00020026 515.7316294540359 102.04 0.087761 101.92 101.87 101.96 -0.11613 6 3 2 0 0 0 0.59218 1 55693 55693 1.8442 0.19162 1 710960 72771 3511 48643 49698 84694 84694 -0.06512757660038915 VRGVCVCPCVV 11 Unmodified _VRGVCVCPCVV_ 0 0 0 ENST00000314028.10_1_17:80201956-80202172:-|nuORF ENST00000314028.10_1_17:80201956-80202172:-|nuORF ENST00000314028.10_1_17:80201956-80202172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5253601074219 3 378.525785 1132.55553 -0.62085 -0.00023501 -0.06851 -2.5933E-05 -0.68936 -0.00026094 378.52552317068853 14.561 0.05167 14.561 14.524 14.576 0 17 13 2 0 0 0 0.7453 1 6913 6913 0 0 1 330590 72772 11721 48644 49699 84695 84695 -0.005449237700304366 VRHECGEC 8 Unmodified _VRHECGEC_ 0 0 0 nc|ENSG00000204519|Q7Z340-3|ZNF551;nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551 nc|ENSG00000204519|Q7Z340-3|ZNF551 nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.6910400390625 2 466.689287 931.36402 0.31209 0.00014565 0.94736 0.00044212 1.2594 0.00058777 466.68995542219625 95.767 0.25375 95.398 95.3 95.554 -0.36814 26 15 2 0 0 0 0.80992 1 52321 52321 0.69038 0 1 314400 72773 10295 48645 49700 84696 84696 -0.10440708476767213 VRHECGEC 8 Unmodified _VRHECGEC_ 0 0 0 nc|ENSG00000204519|Q7Z340-3|ZNF551;nc|ENSG00000204519|Q7Z340-2|ZNF551;ENSG00000204519|ENST00000282296|ZNF551 nc|ENSG00000204519|Q7Z340-3|ZNF551 nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 466.689287 931.36402 2.1205 0.0009896 3.1818 0.0014849 5.3023 0.0024745 466.690882477665 95.331 0.27605 95.335 95.184 95.46 0.004158 -0.031903 0.0014595 NaN 0.69038 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 468200 72774 10295 48645 49700 -0.10440708476767213 VRHESCSGLY 10 Unmodified _VRHESCSGLY_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7733154296875 2 575.769123 1149.52369 0.49641 0.00028582 0.048234 2.7772E-05 0.54464 0.00031359 575.7695559486264 52.858 0.33344 52.406 52.241 52.574 -0.45173 57 16 5 0 0 0 0.50944 1 28635 28635 15.847 0 1 23583000 72775 3126 48646 49701 84697 84697 -0.045088769279118424 VRHLRLDH 8 Unmodified _VRHLRLDH_ 0 0 0 REV__nc|ENSG00000127329|P23467-4|PTPRB REV__nc|ENSG00000127329|P23467-4|PTPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3040161132812 2 523.304324 1044.5941 0.85754 0.00044876 -0.87767 -0.00045929 -0.020123 -1.053E-05 523.3036635696861 91.21 0.46507 91.246 91.012 91.477 0.036499 40 17 3 0 0 0 0.80383 1 50789 50789 4.3292 0 1 15331000 + 72776 19576 48647 49702 84698 84698 0.07358209242693192 VRIAGGGGR 9 Unmodified _VRIAGGGGR_ 0 0 0 REV__nc|ENSG00000146232|O00221|NFKBIE REV__nc|ENSG00000146232|O00221|NFKBIE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2532653808594 2 421.751393 841.488233 -0.79177 -0.00033393 1.3037 0.00054985 0.51196 0.00021592 421.75185517404316 77.692 0.40775 77.21 76.998 77.405 -0.4826 57 19 4 0 0 0 0.62242 2 42457 42457;42563 0 0 1 14702000 + 72777 29685 48648 49703 84699;84700 84699 0.0611487339725727 VRIAGGGGR 9 Unmodified _VRIAGGGGR_ 0 0 0 REV__nc|ENSG00000146232|O00221|NFKBIE REV__nc|ENSG00000146232|O00221|NFKBIE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 421.751393 841.488233 0.077244 3.2578E-05 0.74288 0.00031331 0.82012 0.00034589 421.751538866531 77.215 0.42916 77.265 77.057 77.486 0.05011 0.027678 -0.00024128 NaN 0 36 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4577200 + 72778 29685 48648 49703 0.0611487339725727 VRIFKLRTKKL 11 Unmodified _VRIFKLRTKKL_ 0 0 0 REV__ENST00000370902.7_1_10:99197031-99198452:-|nuORF REV__ENST00000370902.7_1_10:99197031-99198452:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 467.9856262207031 3 467.985401 1400.93437 NaN NaN NaN NaN NaN NaN NaN 17.369 1 17.374 16.874 17.874 0.0050564 0 0 0 0.9435 1 8758 8758 0 0 1 + 72779 26069 48649 49704 84701 84701 0.2499442312400788 VRIHLCSL 8 Unmodified _VRIHLCSL_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.7716674804688 2 470.77348 939.532406 -0.36007 -0.00016951 -1.2044 -0.00056701 -1.5645 -0.00073653 470.7727978986812 36.854 0.40834 36.876 36.661 37.07 0.021545 49 18 3 0 0 0 0.80232 1 19464 19464 5.2307 0 1 7453500 + 72780 29898 48650 49705 84702 84702 0.06022141499192912 VRIHLCSL 8 Unmodified _VRIHLCSL_ 0 0 0 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 REV__nc|ENSG00000198689|Q92581-1|SLC9A6 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 470.77348 939.532406 1.1154 0.00052511 -1.3296 -0.00062596 -0.21421 -0.00010084 470.7735469253697 41.625 0.06142 37.018 36.985 37.047 -4.6079 0.11074 6.1511E-05 NaN 5.2307 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3237700 + 72781 29898 48650 49705 0.06022141499192912 VRIKLLKVR 9 Unmodified _VRIKLLKVR_ 0 0 0 REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF REV__ENST00000275364.7_1_7:2770568-2770751:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 562.9014282226562 2 562.903143 1123.79173 NaN NaN NaN NaN NaN NaN NaN 105.59 1 99.414 98.914 99.914 -6.1757 0 0 0 0.8622 1 70741 70741 0 0 1 + 72782 25170 48651 49706 84703 84703 0.2347883545262448 VRILKKARK 9 Unmodified _VRILKKARK_ 0 0 0 ENST00000506560.5_1_4:83852219-83852264:-|nuORF ENST00000506560.5_1_4:83852219-83852264:-|nuORF ENST00000506560.5_1_4:83852219-83852264:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1111.446166992188 1 1111.77861 1110.77133 -0.04313 -4.7951E-05 -2.9914 -0.0033258 -3.0345 -0.0033737 1112.7794628329054 24.27 0.073006 24.269 24.206 24.279 -0.0016766 4 2 2 0 0 0 0.61381 1 12379 12379 0.52476 0 1 2441600 72783 14525 48652 49707 84704 84704 0.2203766479283331 VRKAIVDVK 9 Unmodified _VRKAIVDVK_ 0 0 0 REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF REV__ENST00000564987.1_1_16:23535694-23546228:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3350830078125 2 514.334759 1026.65496 1.4933 0.00076804 -0.098001 -5.0405E-05 1.3953 0.00071764 514.3345181333392 103.37 0.16173 97.194 97.141 97.303 -6.1757 70 29 3 0 0 0 0.59218 1 69297 69297 1.8442 0 1 13834000 + 72784 18304 48653 49708 84705 84705 0.14270301502256189 VRKGHHLG 8 Unmodified _VRKGHHLG_ 0 0 0 REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2672119140625 2 452.26721 902.519868 NaN NaN NaN NaN NaN NaN NaN 92.26 1 91.779 91.279 92.279 -0.48092 0 0 0 0.97444 1 50429 50429 0 0 1 + 72785 22313 48654 49709 84706 84706 0.06470866151187238 VRKHCEWC 8 Unmodified _VRKHCEWC_ 0 0 0 nc|ENSG00000163235|P01135-2|TGFA;ENSG00000163235|ENST00000295400|TGFA;nc|ENSG00000163235|P01135-3|TGFA;nc|ENSG00000163235|P01135-5|TGFA;nc|ENSG00000163235|P01135-4|TGFA nc|ENSG00000163235|P01135-2|TGFA nc|ENSG00000163235|P01135-2|TGFA MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.1672058105469 3 354.165356 1059.47424 0.86859 0.00030762 2.1091 0.00074697 2.9777 0.0010546 354.16699365831687 93.324 0.89574 87.149 86.74 87.636 -6.1757 186 60 4 0 0 0 0.80232 1 61814 61814 3.5965 0.60125 1 65870000 72786 6968 48655 49710 84707 84707 -0.05311863417728091 VRKHSSTV 8 Unmodified _VRKHSSTV_ 0 0 0 ENSG00000236396|ENST00000588001|SLC35G4 ENSG00000236396|ENST00000588001|SLC35G4 ENSG00000236396|ENST00000588001|SLC35G4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.7467651367188 2 457.264333 912.514114 0.83773 0.00038306 0.19674 8.9962E-05 1.0345 0.00047303 457.2644981595664 68.878 0.90997 68.903 68.357 69.267 0.025146 68 43 3 0 0 0 8.7369 1 37819 37819 0.69038 0 1 1251200 72787 10647 48656 49711 84708 84708 0.05435722848858404 VRKKKMRKLFK 11 Unmodified _VRKKKMRKLFK_ 0 0 0 ENST00000559305.5_1_15:59191033-59209159:-|nuORF ENST00000559305.5_1_15:59191033-59209159:-|nuORF ENST00000559305.5_1_15:59191033-59209159:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.9904479980469 3 487.990269 1460.94898 NaN NaN NaN NaN NaN NaN NaN 16.529 1 16.53 16.03 17.03 0.0010548 0 0 0 0.9435 1 8156 8156 0 0 1 72788 15292 48657 49712 84709 84709 0.23694172000500657 VRKKRRRWPWL 11 Unmodified _VRKKRRRWPWL_ 0 0 0 REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 790.992431640625 2 790.991678 1579.9688 NaN NaN NaN NaN NaN NaN NaN 28.007 1 28.037 27.537 28.537 0.029564 0 0 0 0.9435 1 14570 14570 0 0 1 + 72789 27248 48658 49713 84710 84710 0.20201684055496116 VRKLAHKRIIK 11 Unmodified _VRKLAHKRIIK_ 0 0 0 REV__ENST00000284273.5_1_11:122680793-122681132:+|nuORF REV__ENST00000284273.5_1_11:122680793-122681132:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.4650268554688 2 681.46443 1360.91431 NaN NaN NaN NaN NaN NaN NaN 16.878 1 16.883 16.383 17.383 0.0050564 0 0 0 0.9435 1 8484 8484 0 0 1 + 72790 25208 48659 49714 84711 84711 0.24828672184071365 VRKLFRVV 8 Unmodified _VRKLFRVV_ 0 0 0 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 REV__nc|ENSG00000180264|Q7Z7M1|ADGRD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.8396301269531 2 508.840011 1015.66547 -0.38188 -0.00019432 0.39911 0.00020308 0.017226 8.7654E-06 508.83995031164716 105.98 0.17917 105.93 105.87 106.05 -0.048103 20 9 3 0 0 0 0.81107 1 58726 58726 0 0 1 7414800 + 72791 23147 48660 49715 84712 84712 0.15826328947377988 VRKLKGIP 8 Unmodified _VRKLKGIP_ 0 0 0 ENSG00000198561|ENST00000399050|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-8|CTNND1;nc|ENSG00000198561|O60716-7|CTNND1;CTNND1|p.R919Hfs*5|1|0.11|ENSG00000198561|chr11:57815448-57815448|G/-|frameshift_variant;nc|ENSG00000198561|O60716-5|CTNND1;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 ENSG00000198561|ENST00000399050|CTNND1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.81494140625 2 455.813462 909.612371 NaN NaN NaN NaN NaN NaN NaN 77.005 1 76.526 76.026 77.026 -0.47945 0 0 0 0.97444 1 42159 42159 0 0 1 72792 222 48661 49716 84713 84713 0.15394951164716986 VRKLVAKKL 9 Unmodified _VRKLVAKKL_ 0 0 0 REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1055.75 1 1054.74591 1053.73863 -0.13972 -0.00014737 0.29696 0.00031322 0.15724 0.00016585 1055.746852802093 32.051 0.22427 31.921 31.818 32.042 -0.12915 11 8 2 0 0 0 0.62242 1 16700 16700 0 0 1 1996600 + 72793 27683 48662 49717 84714 84714 0.21391457669983538 VRKPLAGW 8 Unmodified _VRKPLAGW_ 0 0 0 ENST00000610160.1_1_20:31291624-31315937:-|nuORF ENST00000610160.1_1_20:31291624-31315937:-|nuORF ENST00000610160.1_1_20:31291624-31315937:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.78271484375 2 463.782162 925.549771 -0.08167 -3.7877E-05 1.258 0.00058342 1.1763 0.00054554 463.7827326246768 34.382 0.17286 34.382 34.269 34.442 0 13 8 2 0 0 0 0.80975 1 18136 18136 0.79363 0 1 2023900 72794 15888 48663 49718 84715 84715 0.08401805096514181 VRKPLAGW 8 Unmodified _VRKPLAGW_ 0 0 0 ENST00000610160.1_1_20:31291624-31315937:-|nuORF ENST00000610160.1_1_20:31291624-31315937:-|nuORF ENST00000610160.1_1_20:31291624-31315937:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 463.782162 925.549771 -0.08167 -3.7877E-05 1.258 0.00058342 1.1763 0.00054554 463.7827326246768 34.382 0.17286 34.382 34.269 34.442 0 -0.1288 3.3181E-05 NaN 0.79363 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2023900 72795 15888 48663 49718 0.08401805096514181 VRKRRIKKSSR 11 Unmodified _VRKRRIKKSSR_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-11|DST ENSG00000151914|ENST00000680361|DST ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.476806640625 2 707.465493 1412.91643 -0.47115 -0.00033332 0.41902 0.00029644 -0.05213 -3.688E-05 707.4657536408062 103.54 0.11238 103.49 103.4 103.52 -0.04792 6 4 2 0 0 0 0.7453 1 57505 57505 0 0 1 721290 72796 6155 48664 49719 84716 84716 0.22649100921876197 VRKSLGRG 8 Unmodified _VRKSLGRG_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7752075195312 2 436.774868 871.535184 1.0575 0.00046191 0.35486 0.000155 1.4124 0.0006169 436.7749211350576 90.047 0.659 83.872 83.544 84.203 -6.1757 106 37 4 0 0 0 0.81107 1 59562 59562 0 0 1 164060000 72797 6493 48665 49720 84717 84717 0.09427732948392986 VRKTRVAIKK 10 Unmodified _VRKTRVAIKK_ 0 0 0 nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000102882|ENST00000263025|MAPK3;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF nc|ENSG00000102882|P27361-2|MAPK3 nc|ENSG00000102882|P27361-2|MAPK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.908935546875 2 599.908956 1197.80336 NaN NaN NaN NaN NaN NaN NaN 16.051 1 16.057 15.557 16.557 0.0050564 0 0 0 1.0061 1 8030 8030 0 0 1 72798 2073 48666 49721 84718 84718 0.21237032475937667 VRKVKRRRRL 10 Unmodified _VRKVKRRRRL_ 0 0 0 REV__nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L REV__nc|ENSG00000089916|Q9NWQ4-4|GPATCH2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.3164367675781 3 456.316256 1365.92694 NaN NaN NaN NaN NaN NaN NaN 13.955 1 13.963 13.463 14.463 0.0073986 0 0 0 1.0061 1 6900 6900 0 0 1 + 72799 29526 48667 49722 84719 84719 0.258611283669552 VRKVVKLLREP 11 Unmodified _VRKVVKLLREP_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS AL20221201_MKP_PDAC_01 4 446.2977905273438 3 446.297756 1335.87144 NaN NaN NaN NaN NaN NaN NaN 104.79 1 98.618 98.118 99.118 -6.1757 0 0 0 0.94293 1 70153 70153 0.40827 0.32491 1 + 72800 22279 48668 49723 84720 84720 0.21693857335958455 VRLAIRKHL 9 Unmodified _VRLAIRKHL_ 0 0 0 REV__ENSG00000007216|ENST00000314669|SLC13A2 REV__ENSG00000007216|ENST00000314669|SLC13A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.2486267089844 3 369.248737 1104.72438 NaN NaN NaN NaN NaN NaN NaN 58.189 1 58.189 57.689 58.689 0 0 0 0 0.86004 1 32398 32398 0.26902 0 1 + 72801 17006 48669 49724 84721 84721 0.176208052416996 VRLCKARA 8 Unmodified _VRLCKARA_ 0 0 0 REV__ENSG00000136918|ENST00000373574|WDR38 REV__ENSG00000136918|ENST00000373574|WDR38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 919.5626220703125 1 916.550916 915.54364 0.19493 0.00017866 -0.1639 -0.00015022 0.031029 2.844E-05 916.5506484673987 86.763 0.40244 86.259 86.066 86.469 -0.50318 42 15 4 0 0 0 0.81107 1 47511 47511 0 0 1 3330000 + 72802 20197 48670 49725 84722 84722 0.08248963593325698 VRLCVKNI 8 Unmodified _VRLCVKNI_ 0 0 0 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 ENSG00000236699|ENST00000420470|ARHGEF38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7892456054688 2 472.78913 943.563706 NaN NaN NaN NaN NaN NaN NaN 85.487 1 84.986 84.486 85.486 -0.5015 0 0 0 0.97444 1 46783 46783 2.5775 0 1 72803 10649 48671 49726 84723 84723 0.08966714533289633 VRLDEIRKELL 11 Unmodified _VRLDEIRKELL_ 0 0 0 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 REV__nc|ENSG00000157741|Q6ZU65-2|UBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.4226684570312 2 692.419551 1382.82455 0.73875 0.00051152 -0.52465 -0.00036328 0.2141 0.00014824 692.4192122358073 100.3 0.14131 94.122 94.03 94.171 -6.1757 26 8 4 0 0 0 0.26767 1 67014 67014 28.495 3.5035 1 71822000 + 72804 21399 48672 49727 84724 84724 0.14844952994189953 VRLILIDL 8 Unmodified _VRLILIDL_ 0 0 0 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 ENSG00000119457|ENST00000374228|SLC46A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.8216857910156 2 477.820953 953.627353 NaN NaN NaN NaN NaN NaN NaN 103.54 1 103.54 103.04 104.04 0 0 0 0 0.97444 1 57073 57073 0.69038 0 1 72805 3438 48673 49728 84725 84725 0.14868398242049352 VRLLKGVGIL 10 Unmodified _VRLLKGVGIL_ 0 0 0 REV__ENSG00000189091|ENST00000302516|SF3B3 REV__ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20221201_MKP_PDAC_01 4 534.3687744140625 2 534.368601 1066.72265 NaN NaN NaN NaN NaN NaN NaN 104.98 1 98.808 98.308 99.308 -6.1757 0 0 0 1.0061 1 70285 70285 0 0 1 + 72806 23761 48674 49729 84726 84726 0.19195751433107944 VRLLLLLLLLL 11 Unmodified _VRLLLLLLLLL_ 0 0 0 ENSG00000142538|ENST00000270631|PTH2 REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF REV__ENST00000529734.5_1_11:46105847-46142581:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 646.4756469726562 2 646.475609 1290.93667 NaN NaN NaN NaN NaN NaN NaN 19.134 1 16.478 15.978 16.978 -2.6564 0 0 0 0.9435 1 10113 10113 0 0 1 72807 25525 48675 49730 84727 84727 0.30283458809162767 VRLLRKTT 8 Unmodified _VRLLRKTT_ 0 0 0 nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 nc|ENSG00000169862|Q9UQB3-2|CTNND2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.8279724121094 2 493.827101 985.639649 1.5466 0.00076375 -0.12444 -6.1449E-05 1.4222 0.0007023 493.82687460084674 103.08 0.2198 96.902 96.792 97.012 -6.1757 111 59 3 0 0 0 0.80992 1 69120 69120 0.69038 0 1 8448500 72808 7920 48676 49731 84728 84728 0.14625434705067164 VRLPLGTL 8 Unmodified _VRLPLGTL_ 0 0 0 ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT ENSG00000101654|ENST00000383314|RNMT ENSG00000101654|ENST00000383314|RNMT MULTI-MSMS AL20221201_MKP_PDAC_01 4 868.5652465820312 1 868.561464 867.554188 1.4269 0.0012394 2.0899 0.0018152 3.5169 0.0030546 868.5630827232999 105.48 0.16916 99.3 99.247 99.416 -6.1757 31 22 2 0 0 0 0.80992 1 70658 70658 0.69038 0 1 7741800 72809 1984 48677 49732 84729 84729 0.11511269519428424 VRLRPAKS 8 Unmodified _VRLRPAKS_ 0 0 0 ENST00000599589.5_3_19:42433018-42434019:+|nuORF ENST00000599589.5_3_19:42433018-42434019:+|nuORF ENST00000599589.5_3_19:42433018-42434019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 927.5925903320312 1 926.58941 925.582134 1.5628 0.0014481 -1.173 -0.0010869 0.38979 0.00036118 926.5882597778801 103.4 0.087196 97.226 97.163 97.25 -6.1757 25 17 2 0 0 0 0.81007 1 69320 69320 0.6015 0 1 4569400 72810 15789 48678 49733 84730 84730 0.1163659249950797 VRLRRLWPP 9 Unmodified _VRLRRLWPP_ 0 0 0 REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.251953125 3 398.25237 1191.73528 NaN NaN NaN NaN NaN NaN NaN 88.642 1 88.642 88.142 89.142 0 0 0 0 0.86004 1 49060 49060 0.26902 0.033176 1 + 72811 25397 48679 49734 84731 84731 0.14708207615967694 VRLRRLWPP 9 Unmodified _VRLRRLWPP_ 0 0 0 REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.251708984375 3 398.25237 1191.73528 NaN NaN NaN NaN NaN NaN NaN 88.826 1 88.826 88.326 89.326 0 0 0 0 0.86004 1 49159 49159 0.26902 0.14616 1 + 72812 25397 48679 49734 84732 84732 0.14708207615967694 VRLRRLWPP 9 Unmodified _VRLRRLWPP_ 0 0 0 REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF REV__ENST00000308219.13_1_11:1482541-1482889:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2504272460938 3 398.25237 1191.73528 NaN NaN NaN NaN NaN NaN NaN 89.278 1 88.775 88.275 89.275 -0.50304 0 0 0 0.86004 1 48814 48814 0.26902 0.033176 1 + 72813 25397 48679 49734 84733 84733 0.14708207615967694 VRLRSDVP 8 Unmodified _VRLRSDVP_ 0 0 0 ENST00000519256.5_1_5:170585477-170669877:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF ENST00000519256.5_1_5:170585477-170669877:+|nuORF ENST00000519256.5_1_5:170585477-170669877:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 471.279296875 2 471.279983 940.545414 NaN NaN NaN NaN NaN NaN NaN 80.105 1 73.93 73.43 74.43 -6.1757 0 0 0 0.9192 1 52540 52540 16.942 3.4344 1 72814 14701 48680 49735 84734 84734 0.0727629588294576 VRLVAHAI 8 Unmodified _VRLVAHAI_ 0 0 0 REV__ENSG00000174339|ENST00000307832|OR2Y1 REV__ENSG00000174339|ENST00000307832|OR2Y1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.7163391113281 2 439.782162 877.549771 1.1477 0.00050476 -0.091499 -4.024E-05 1.0562 0.00046452 439.782133733296 42.829 0.30835 38.144 37.952 38.26 -4.6846 32 19 2 0 0 0 0.77907 1 25839 25839 10.183 4.423 1 10640000 + 72815 22786 48681 49736 84735 84735 0.10609805096498803 VRMEEHFIQ 9 Unmodified _VRMEEHFIQ_ 0 0 0 ENSG00000179023|ENST00000400664|KLHDC7A ENSG00000179023|ENST00000400664|KLHDC7A ENSG00000179023|ENST00000400664|KLHDC7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8669128417969 3 396.865852 1187.57573 NaN NaN NaN NaN NaN NaN NaN 14.847 1 14.816 14.316 15.316 -0.030868 0 0 0 0.85852 1 7251 7251 0.20686 0 1 72816 8800 48682 49737 84736 84736 -0.010557135141652907 VRMKRKKR 8 Unmodified _VRMKRKKR_ 0 0 0 REV__nc|ENSG00000185697|P10243-2|MYBL1 REV__nc|ENSG00000185697|P10243-2|MYBL1 MSMS AL20221201_MKP_PDAC_01 4 551.3623046875 2 551.361119 1100.70769 NaN NaN NaN NaN NaN NaN NaN 108.97 1 102.8 102.3 103.3 -6.1757 0 0 0 0.97444 1 72803 72803 0 0 1 + 72817 23520 48683 49738 84737 84737 0.1613598108408496 VRMRKLLLG 9 Unmodified _VRMRKLLLG_ 0 0 0 REV__ENST00000515388.1_1_4:144316123-144316261:+|nuORF REV__ENST00000515388.1_1_4:144316123-144316261:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 543.3534545898438 2 543.352428 1084.6903 NaN NaN NaN NaN NaN NaN NaN 105.98 1 99.807 99.307 100.31 -6.1757 0 0 0 0.8622 1 70970 70970 0 0 1 + 72818 28214 48684 49739 84738 84738 0.1513464075844695 VRMVRMKQN 9 Unmodified _VRMVRMKQN_ 0 0 0 ENST00000372406.5_1_9:132901936-132902038:+|nuORF ENST00000372406.5_1_9:132901936-132902038:+|nuORF ENST00000372406.5_1_9:132901936-132902038:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 387.8844299316406 3 387.88296 1160.62705 NaN NaN NaN NaN NaN NaN NaN 15.526 1 12.999 12.499 13.499 -2.5273 0 0 0 0.7453 1 7973 7973 4.897 0 1 72819 12380 48685 49740 84739 84739 0.05316331978906419 VRNEKKWWMKP 11 Unmodified _VRNEKKWWMKP_ 0 0 0 REV__ENST00000428675.5_1_2:198669918-198948555:+|nuORF REV__ENST00000428675.5_1_2:198669918-198948555:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 751.4103393554688 2 751.408463 1500.80237 NaN NaN NaN NaN NaN NaN NaN 98.301 1 92.125 91.625 92.625 -6.1757 0 0 0 0.93777 1 65187 65187 8.1555 4.559 1 + 72820 26943 48686 49741 84740 84740 0.0720045004475196 VRNHRVRWFWR 11 Unmodified _VRNHRVRWFWR_ 0 0 0 REV__ENSG00000102996|ENST00000219271|MMP15 REV__ENSG00000102996|ENST00000219271|MMP15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.4476928710938 2 806.447634 1610.88072 NaN NaN NaN NaN NaN NaN NaN 55.713 1 55.235 54.735 55.735 -0.47798 0 0 0 0.9435 1 30228 30228 0 0 1 + 72821 18273 48687 49742 84741 84741 0.09971063464877261 VRNHYEQLY 9 Unmodified _VRNHYEQLY_ 0 0 0 REV__nc|ENSG00000133958|Q9P2D8|UNC79 REV__nc|ENSG00000133958|Q9P2D8|UNC79 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.872314453125 3 407.871883 1220.59382 1.0404 0.00042434 -0.4547 -0.00018546 0.58567 0.00023888 407.87184323200785 36.819 0.38234 32.536 32.337 32.719 -4.2835 40 22 2 0 0 0 0.45045 1 21604 21604 6.6304 0 1 13121000 + 72822 19942 48688 49743 84742 84742 -0.007652552678109714 VRNILQLQPY 10 Unmodified _VRNILQLQPY_ 0 0 0 ENSG00000112365|ENST00000230122|ZBTB24 ENSG00000112365|ENST00000230122|ZBTB24 ENSG00000112365|ENST00000230122|ZBTB24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2434387207031 3 415.243429 1242.70846 -0.20023 -8.3143E-05 -0.2185 -9.0732E-05 -0.41873 -0.00017388 415.2433130221247 37.646 1.1282 37.664 37.416 38.544 0.01704 163 53 6 0 0 0 0.64183 2 20125 20125;20345 8.9762 1.6807 1 514940000 72823 2887 48689 49744 84743;84744 84743 0.09681054214138385 VRNNVIIVM 9 Oxidation (M) _VRNNVIIVM(Oxidation (M))_ VRNNVIIVM(1) VRNNVIIVM(67) 0 0 1 ENSG00000151503|ENST00000534548|NCAPD3;ENST00000525964.6_1_11:134022841-134052943:-|nuORF ENSG00000151503|ENST00000534548|NCAPD3 ENSG00000151503|ENST00000534548|NCAPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.310546875 2 537.310426 1072.6063 -0.049269 -2.6473E-05 -0.15001 -8.0602E-05 -0.19928 -0.00010707 537.3105213028991 37.709 0.28769 37.726 37.572 37.859 0.01704 42 13 4 0 0 0 0.016184 1 19997 19997 67.344 31.3 1 10141000 72824 6122 48690 49745 84745 84745 1091 0.07290064870880997 VRPFLVRL 8 Unmodified _VRPFLVRL_ 0 0 0 REV__ENST00000588572.6_3_19:55865056-55865797:-|nuORF REV__ENST00000588572.6_3_19:55865056-55865797:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.3262329101562 2 500.326737 998.63892 -0.5874 -0.00029389 0.80588 0.0004032 0.21848 0.00010931 500.3267732482487 105.97 0.15964 105.92 105.86 106.02 -0.048103 23 9 3 0 0 0 0.80992 1 58727 58727 0.69038 0 1 8757100 + 72825 29126 48691 49746 84746 84746 0.1395464005604481 VRPGHGKG 8 Unmodified _VRPGHGKG_ 0 0 0 ENST00000566844.1_1_15:72564732-72564843:-|nuORF;ENST00000569795.5_1_15:72563579-72564960:-|nuORF ENST00000566844.1_1_15:72564732-72564843:-|nuORF ENST00000566844.1_1_15:72564732-72564843:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2333679199219 2 404.232836 806.45112 -0.0089295 -3.6096E-06 1.3775 0.00055682 1.3686 0.00055321 404.2332801419522 75.706 0.30533 75.754 75.559 75.864 0.047943 28 13 3 0 0 0 0.81107 1 41731 41731 0 0 1 2504500 72826 15426 48692 49747 84747 84747 0.04015201851484562 VRPGTALEL 9 Unmodified _VRPGTALEL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.2825317382812 2 478.282192 954.549831 0.12361 5.9119E-05 -0.22991 -0.00010996 -0.10631 -5.0844E-05 478.282230464044 45.457 0.24223 45.457 45.363 45.605 0 28 13 3 0 0 0 0.078314 1 24781 24781 38.176 14.155 1 18953000 72827 1675 48693 49748 84748 84748 0.07073760305831911 VRPGTALEL 9 Unmodified _VRPGTALEL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.9294128417969 2 478.282192 954.549831 0.16035 7.6692E-05 0.20351 9.7337E-05 0.36386 0.00017403 478.28266498769466 45.651 0.16173 45.327 45.195 45.357 -0.32425 15 8 2 0 0 0 0.18094 1 24367 24367 20.415 6.5085 1 8534600 72828 1675 48693 49748 84749 84749 0.07073760305831911 VRPGTALEL 9 Unmodified _VRPGTALEL_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.2829284667969 2 478.282192 954.549831 1.1435 0.00054692 1.6109 0.00077044 2.7544 0.0013174 478.2825968835413 50.484 0.30961 44.945 44.775 45.085 -5.5391 28 19 2 0 0 0 0.10247 1 31651 31651 32.786 8.7651 1 59173000 72829 1675 48693 49748 84750 84750 0.07073760305831911 VRPLLLRT 8 Unmodified _VRPLLLRT_ 0 0 0 ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C;ENST00000460773.5_1_X:138813815-138814653:-|nuORF ENSG00000101974|ENST00000682941|ATP11C ENSG00000101974|ENST00000682941|ATP11C MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.3247375488281 2 484.324194 966.633835 1.6215 0.00078534 0.17066 8.2657E-05 1.7922 0.000868 484.3241809778208 103.81 0.17896 97.638 97.556 97.735 -6.1757 107 46 3 0 0 0 0.80992 1 69554 69554 0.69038 0 1 10994000 72830 2003 48694 49749 84751 84751 0.149183361934206 VRPLRLFVY 9 Unmodified _VRPLRLFVY_ 0 0 0 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 ENSG00000100304|ENST00000216129|TTLL12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.215087890625 3 388.241359 1161.70225 1.4298 0.00055509 1.0905 0.00042336 2.5202 0.00097845 388.241874159697 93.905 0.15888 87.729 87.683 87.842 -6.1757 9 8 2 0 0 0 0.21021 1 62226 62226 7.609 4.7657 1 3484000 72831 1790 48695 49750 84752 84752 0.12786580773263267 VRPPPTPH 8 Unmodified _VRPPPTPH_ 0 0 0 REV__ENST00000486015.1_1_10:77162714-77167299:+|nuORF REV__ENST00000486015.1_1_10:77162714-77167299:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7558898925781 2 450.756144 899.497735 NaN NaN NaN NaN NaN NaN NaN 56.798 1 56.798 56.298 57.298 0 0 0 0 0.97444 1 31596 31596 2.5775 0 1 + 72832 27791 48696 49751 84753 84753 0.043966416827515786 VRPPVQVY 8 Unmodified _VRPPVQVY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2798156738281 2 479.279452 956.544351 0.31809 0.00015245 -0.19972 -9.5723E-05 0.11837 5.6732E-05 479.2794155201233 40 0.47175 39.703 39.471 39.942 -0.29716 37 22 2 0 0 0 0.48669 2 21106 21106;21219 36.044 17.909 1 2850600 72833 10686 48697 49752 84754;84755 84754 0.0643408151404401 VRPPVQVY 8 Unmodified _VRPPVQVY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2801818847656 2 479.279452 956.544351 0.56792 0.00027219 0.2875 0.00013779 0.85542 0.00040999 479.279553327939 45.012 0.52989 40.16 39.893 40.423 -4.852 59 35 2 0 0 0 0.31612 2 27618 27474;27618 53.576 27.234 1 18329000 72834 10686 48697 49752 84756;84757 84757 0.0643408151404401 VRPPVQVY 8 Unmodified _VRPPVQVY_ 0 0 0 ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO ENST00000495005.5_1_21:35281377-35288052:-|nuORF ENST00000495005.5_1_21:35281377-35288052:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 479.279452 956.544351 0.34502 0.00016536 0.55553 0.00026625 0.90055 0.00043162 479.2798691925191 39.665 0.18594 39.67 39.543 39.729 0.0050545 -0.016481 0.00054191 NaN 36.044 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 488830 72835 10686 48697 49752 0.0643408151404401 VRPPWPLCIV 10 Unmodified _VRPPWPLCIV_ 0 0 0 REV__ENST00000549565.1_1_12:56693935-56708330:+|nuORF REV__ENST00000549565.1_1_12:56693935-56708330:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.8948669433594 3 393.895083 1178.66342 0.61111 0.00024071 -0.071917 -2.8328E-05 0.53919 0.00021239 393.89507651177775 17.3 0.2291 14.714 14.595 14.824 -2.5866 86 34 3 0 0 0 0.62068 1 8990 8990 5.7834 0 1 11950000 + 72836 28696 48698 49753 84758 84758 0.08123532147214974 VRPQAAAL 8 Unmodified _VRPQAAAL_ 0 0 0 ENST00000306324.3_1_2:177016645-177017426:+|nuORF ENST00000306324.3_1_2:177016645-177017426:+|nuORF ENST00000306324.3_1_2:177016645-177017426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2503967285156 2 413.250695 824.486836 0.22926 9.4741E-05 0.50145 0.00020722 0.7307 0.00030196 413.25076955071614 39.101 0.20637 39.101 38.97 39.177 0 16 9 2 0 0 0 0.74163 1 20955 20955 13.508 0 1 811620 72837 11623 48699 49754 84759 84759 0.06757239308467433 VRPVRTLG 8 Unmodified _VRPVRTLG_ 0 0 0 REV__ENST00000533764.5_1_8:145690205-145690799:-|nuORF REV__ENST00000533764.5_1_8:145690205-145690799:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2852172851562 2 449.285069 896.555585 0.25707 0.0001155 0.43458 0.00019525 0.69165 0.00031075 449.2852100857962 99.974 1.0013 99.816 99.298 100.3 -0.1575 50 35 2 0 0 0 0.81107 1 54710 54710 0 0 1 959760 + 72838 28488 48700 49755 84760 84760 0.1031690360820221 VRPYSVYLF 9 Unmodified _VRPYSVYLF_ 0 0 0 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 ENSG00000141526|ENST00000582743|SLC16A3 MSMS AL20221201_MKP_PDAC_01 4 572.3132934570312 2 572.313492 1142.61243 NaN NaN NaN NaN NaN NaN NaN 105.18 1 99.002 98.502 99.502 -6.1757 0 0 0 0.84564 1 70456 70456 2.0598 0.21551 1 72839 5345 48701 49756 84761 84761 0.04682906374023332 VRQHFQLHSN 10 Unmodified _VRQHFQLHSN_ 0 0 0 REV__ZNF226|p.S408F|1|0.2|ENSG00000167380|chr19:44176485-44176485|C/T|missense_variant REV__ZNF226|p.S408F|1|0.2|ENSG00000167380|chr19:44176485-44176485|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.81103515625 2 633.328528 1264.6425 NaN NaN NaN NaN NaN NaN NaN 40.928 1 40.625 40.125 41.125 -0.30304 0 0 0 0.95103 1 21655 21655 5.7319 0 1 + 72840 30139 48702 49757 84762 84762 0.02076658091959871 VRQKLLQL 8 Unmodified _VRQKLLQL_ 0 0 0 nc|ENSG00000174791|Q13671-2|RIN1;ENSG00000174791|ENST00000311320|RIN1;ENST00000526246.5_1_11:66099749-66102792:-|nuORF nc|ENSG00000174791|Q13671-2|RIN1 nc|ENSG00000174791|Q13671-2|RIN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2816467285156 2 499.329476 996.6444 -0.54919 -0.00027423 0.019521 9.7473E-06 -0.52967 -0.00026448 499.3294837459147 103.58 0.24036 103.53 103.4 103.64 -0.047928 15 9 2 0 0 0 8.7369 1 57462 57462 0 0 1 3496900 72841 8456 48703 49758 84763 84763 0.14594318847866816 VRQLNLYGFS 10 Unmodified _VRQLNLYGFS_ 0 0 0 ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2;nc|ENSG00000172468|Q96LI6-2|HSFY1;nc|ENSG00000172468|Q96LI6-3|HSFY1 ENSG00000172468|ENST00000307393|HSFY1 ENSG00000172468|ENST00000307393|HSFY1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8241577148438 2 598.824755 1195.63496 0.65553 0.00039255 -0.54749 -0.00032785 0.10804 6.4697E-05 598.8242195075899 57.71 0.45211 57.644 57.458 57.91 -0.066036 55 22 4 0 0 0 0.54684 1 31365 31365 13.906 2.4113 1 15969000 72842 7931 48704 49759 84764 84764 0.04496505771635384 VRQPPGKGLE 10 Unmodified _VRQPPGKGLE_ 0 0 0 nc|ENSG00000276775|A0A075B6R2|IGHV4-4 nc|ENSG00000276775|A0A075B6R2|IGHV4-4 nc|ENSG00000276775|A0A075B6R2|IGHV4-4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.8769836425781 3 360.876857 1079.60874 NaN NaN NaN NaN NaN NaN NaN 16.815 1 16.82 16.32 17.32 0.0050564 0 0 0 0.78298 1 8448 8448 7.9454 3.0484 1 72843 16608 48705 49760 84765 84765 0.07212236600184951 VRQQRRRRRRR 11 Unmodified _VRQQRRRRRRR_ 0 0 0 REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF REV__ENST00000397992.5_1_16:72984846-73092758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.0071411132812 2 812.009787 1622.00502 NaN NaN NaN NaN NaN NaN NaN 92.006 1 92.036 91.536 92.536 0.030197 0 0 0 0.9435 1 51168 51168 0 0 1 + 72844 26551 48706 49761 84766 84766 0.21889954004882384 VRQSKLGS 8 Unmodified _VRQSKLGS_ 0 0 0 REV__ENST00000261772.12_1_16:70286741-70287192:-|nuORF REV__ENST00000261772.12_1_16:70286741-70287192:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.7589111328125 2 437.758884 873.503215 NaN NaN NaN NaN NaN NaN NaN 4.5886 1 4.5157 4.0157 5.0157 -0.072869 0 0 0 0.97444 1 2267 2267 0 0 1 + 72845 25004 48707 49762 84767 84767 0.0614032047458295 VRQYIVHLL 9 Unmodified _VRQYIVHLL_ 0 0 0 REV__ENSG00000100802|ENST00000299088|C14orf93 REV__ENSG00000100802|ENST00000299088|C14orf93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.849365234375 2 570.848033 1139.68151 0.31628 0.00018055 0.14396 8.2182E-05 0.46025 0.00026273 570.8481662752405 60.182 0.1529 60.129 60.068 60.221 -0.053059 11 8 2 0 0 0 0.2143 1 32820 32820 21.747 1.3321 1 4191000 + 72846 18109 48708 49763 84768 84768 0.11725990393620123 VRRAAAPA 8 Unmodified _VRRAAAPA_ 0 0 0 REV__ENSG00000228594|ENST00000422725|FNDC10 REV__ENSG00000228594|ENST00000422725|FNDC10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.4891357421875 1 811.489696 810.48242 0.37608 0.00030518 -1.2233 -0.00099267 -0.84719 -0.00068749 811.4884370064788 76.107 0.42544 76.155 75.927 76.352 0.047943 43 17 3 0 0 0 0.80975 1 42012 42012 0.79363 0 1 25126000 + 72847 24399 48709 49764 84769 84769 0.06959774885547176 VRRADHRGS 9 Unmodified _VRRADHRGS_ 0 0 0 ENST00000216181.9_1_22:36745290-36784030:-|nuORF ENST00000216181.9_1_22:36745290-36784030:-|nuORF ENST00000216181.9_1_22:36745290-36784030:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2866821289062 2 527.286663 1052.55877 0.40132 0.00021161 -0.027171 -1.4327E-05 0.37415 0.00019728 527.7881879180662 86.245 0.21127 85.741 85.621 85.833 -0.50318 11 8 2 0 0 0 0.62242 1 47199 47199 0 0 1 442620 72848 11005 48710 49765 84770 84770 0.03459546714884709 VRREHEAEEY 10 Unmodified _VRREHEAEEY_ 0 0 0 REV__ENSG00000173218|ENST00000355485|VANGL1 REV__ENSG00000173218|ENST00000355485|VANGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.2117004394531 3 439.877586 1316.61093 -0.56706 -0.00024944 0.75013 0.00032997 0.18307 8.0527E-05 439.87795982865987 19.108 0.22947 19.131 19.023 19.253 0.023106 45 12 5 0 0 0 0.72247 1 9685 9685 0.13989 0 1 7788300 + 72849 22712 48711 49766 84771 84771 -0.03471379452662404 VRRIPIGG 8 Unmodified _VRRIPIGG_ 0 0 0 nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6;nc|ENSG00000122257|Q7Z6E9-3|RBBP6;nc|ENSG00000122257|Q7Z6E9-4|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.2801513671875 2 434.279786 866.54502 0.30242 0.00013133 0.1762 7.6518E-05 0.47861 0.00020785 434.2797087387251 101.44 0.88861 101.31 100.84 101.73 -0.13293 67 38 2 0 0 0 0.81107 3 55228 55228;55320;55429 0 0 1 807410 72850 3628 48712 49767 84772;84773;84774 84772 0.10640920953767363 VRRIWNRAIPL 11 Unmodified _VRRIWNRAIPL_ 0 0 0 nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK nc|ENSG00000107815|Q96RR1-3|TWNK MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2909851074219 3 465.289484 1392.84662 0.78017 0.000363 1.3792 0.00064174 2.1594 0.0010047 465.28992014862945 100.7 0.083801 94.52 94.472 94.556 -6.1757 13 5 3 0 0 0 0.71503 1 67438 67438 2.8433 0.21205 1 23996000 72851 2520 48713 49768 84775 84775 0.16591222253282467 VRRKHIRL 8 Unmodified _VRRKHIRL_ 0 0 0 ENSG00000174527|ENST00000310903|MYO1H ENSG00000174527|ENST00000310903|MYO1H ENSG00000174527|ENST00000310903|MYO1H MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3587646484375 2 539.359434 1076.70431 1.1707 0.00063143 -1.6702 -0.00090082 -0.49947 -0.00026939 539.3583164816182 102.76 0.092781 96.585 96.516 96.609 -6.1757 30 24 2 0 0 0 0.81107 1 68937 68937 0 0 1 5153200 72852 8431 48714 49769 84776 84776 0.16903054301724296 VRRKHIRL 8 Unmodified _VRRKHIRL_ 0 0 0 ENSG00000174527|ENST00000310903|MYO1H ENSG00000174527|ENST00000310903|MYO1H ENSG00000174527|ENST00000310903|MYO1H MSMS AL20221201_MKP_PDAC_01 4 359.5615539550781 3 359.908715 1076.70431 NaN NaN NaN NaN NaN NaN NaN 3.2122 1 0.73024 0.23024 1.2302 -2.482 0 0 0 0.97444 1 1637 1637 0 0 1 72853 8431 48714 49769 84777 84777 0.16903054301724296 VRRKRKKQPRI 11 Unmodified _VRRKRKKQPRI_ 0 0 0 REV__ENSG00000159714|ENST00000565726|ZDHHC1 REV__ENSG00000159714|ENST00000565726|ZDHHC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 732.7119750976562 2 732.989135 1463.96372 NaN NaN NaN NaN NaN NaN NaN 83.706 1 83.769 83.269 84.269 0.063171 0 0 0 0.9435 1 46310 46310 0 0 1 + 72854 21496 48715 49770 84778 84778 0.25029380192881945 VRRLHLAG 8 Unmodified _VRRLHLAG_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2906799316406 2 461.290685 920.566818 -0.46586 -0.0002149 0.42066 0.00019404 -0.0452 -2.0851E-05 461.2907613109969 103.32 0.17117 103.27 103.16 103.34 -0.047928 9 6 2 0 0 0 0.81107 1 57385 57385 0 0 1 11781000 + 72855 18599 48716 49771 84779 84779 0.10335725702327636 VRRLHSLMR 9 Unmodified _VRRLHSLMR_ 0 0 0 REV__ENSG00000167987|ENST00000301765|VPS37C REV__ENSG00000167987|ENST00000301765|VPS37C MSMS AL20221201_MKP_PDAC_01 4 390.1486206054688 3 389.901231 1166.68186 NaN NaN NaN NaN NaN NaN NaN 4.3722 1 1.8903 1.3903 2.3903 -2.482 0 0 0 0.8622 1 2219 2219 0 0 1 + 72856 22274 48717 49772 84780 84780 0.1051908684182763 VRRLHSRRL 9 Unmodified _VRRLHSRRL_ 0 0 0 ENSG00000165879|ENST00000371021|FRAT1 ENSG00000165879|ENST00000371021|FRAT1 ENSG00000165879|ENST00000371021|FRAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8785400390625 2 596.878522 1191.74249 NaN NaN NaN NaN NaN NaN NaN 18.638 1 18.644 18.144 19.144 0.0060463 0 0 0 0.8622 1 9453 9453 0 0 1 72857 7399 48718 49773 84781 84781 0.1542894021642951 VRRLKAGP 8 Unmodified _VRRLKAGP_ 0 0 0 ENST00000424148.1_1_11:1618612-1618831:+|nuORF ENST00000424148.1_1_11:1618612-1618831:+|nuORF ENST00000424148.1_1_11:1618612-1618831:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 896.579833984375 1 896.578845 895.571569 1.2156 0.0010899 0.03357 3.0098E-05 1.2492 0.00112 896.578882376263 103.65 0.13893 97.472 97.378 97.517 -6.1757 38 23 2 0 0 0 0.81107 1 69463 69463 0 0 1 7795800 72858 13141 48719 49774 84782 84782 0.1196060984509586 VRRLLLLV 8 Unmodified _VRRLLLLV_ 0 0 0 ENST00000568503.1_1_16:67208072-67208471:+|nuORF;nc|ENSG00000140939|O60936|NOL3;ENSG00000140939|ENST00000568146|NOL3;nc|ENSG00000140939|O60936-3|NOL3 ENST00000568503.1_1_16:67208072-67208471:+|nuORF ENST00000568503.1_1_16:67208072-67208471:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.3504638671875 2 491.350212 980.68587 NaN NaN NaN NaN NaN NaN NaN 13.971 1 13.979 13.479 14.479 0.0073986 0 0 0 0.97444 1 6909 6909 0 0 1 72859 5282 48720 49775 84783 84783 0.19475499607199254 VRRLPGGG 8 Unmodified _VRRLPGGG_ 0 0 0 ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF ENST00000497505.5_1_2:203879615-203880929:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2479858398438 2 406.248486 810.48242 0.012536 5.0927E-06 0.17117 6.9536E-05 0.1837 7.4629E-05 406.24838357471236 75.905 0.45403 75.905 75.672 76.126 0 45 20 3 0 0 0 0.81107 2 42138 42138;42238 0 0 1 3377100 72860 14401 48721 49776 84784;84785 84784 0.06959774885581282 VRRLVQGK 8 Unmodified _VRRLVQGK_ 0 0 0 REV__ENST00000585047.5_1_17:38218205-38233770:+|nuORF REV__ENST00000585047.5_1_17:38218205-38233770:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3128051757812 2 478.311618 954.608683 1.6414 0.00078511 0.63002 0.00030135 2.2714 0.0010865 478.31292997676275 109.91 0.94933 103.74 102.87 103.82 -6.1757 406 209 3 0 0 0 0.81107 2 72885 72885;72992 0 0 1 4378400 + 72861 29031 48722 49777 84786;84787 84786 0.12956281390859203 VRRNREFL 8 Unmodified _VRRNREFL_ 0 0 0 REV__ENSG00000204311|ENST00000644580|PJVK REV__ENSG00000204311|ENST00000644580|PJVK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3189086914062 2 545.317432 1088.62031 1.8693 0.0010193 -0.84002 -0.00045808 1.0293 0.00056127 545.3168503894176 93.671 1.0622 93.694 93.003 94.066 0.022987 107 41 4 0 0 0 0.79669 1 52166 52166 8.5933 8.5933 1 14614000 + 72862 24159 48723 49778 84788 84788 0.07954478414194455 VRRQQQLWYLM 11 Unmodified _VRRQQQLWYLM_ 0 0 0 REV__ENSG00000182791|ENST00000333861|CCDC87 REV__ENSG00000182791|ENST00000333861|CCDC87 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.9454345703125 3 507.610006 1519.80819 0.38156 0.00019368 1.4348 0.00072829 1.8163 0.00092198 507.9449985656477 38.837 0.26302 38.849 38.718 38.981 0.011452 42 12 5 0 0 0 0.69838 1 20639 20639 4.4062 3.0765 1 22251000 + 72863 23295 48724 49779 84789 84789 0.06907548556455367 VRRQSPAESF 10 Unmodified _VRRQSPAESF_ 0 0 0 ENST00000356842.8_1_2:60679471-60679627:-|nuORF ENST00000356842.8_1_2:60679471-60679627:-|nuORF ENST00000356842.8_1_2:60679471-60679627:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8768005371094 3 392.875516 1175.60472 -0.32112 -0.00012616 2.8646 0.0011254 2.5435 0.00099929 392.8765825795133 31.345 0.25032 31.375 31.272 31.522 0.030106 26 10 3 0 0 0 0.63399 1 16454 16454 8.4443 5.1247 1 3437700 72864 12100 48725 49780 84790 84790 0.0239414710647452 VRRRKLKMKL 10 Unmodified _VRRRKLKMKL_ 0 0 0 REV__nc|ENSG00000205238|Q495Y8-2|SPDYE2 REV__nc|ENSG00000205238|Q495Y8-2|SPDYE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.4457397460938 2 664.445183 1326.87581 NaN NaN NaN NaN NaN NaN NaN 94.106 1 93.685 93.185 94.185 -0.42044 0 0 0 1.0061 1 51415 51415 0 0 1 + 72865 22743 48726 49781 84791 84791 0.22545043277909826 VRRRLPRGR 9 Unmodified _VRRRLPRGR_ 0 0 0 ENST00000227507.2_1_11:69467885-69468137:+|nuORF ENST00000227507.2_1_11:69467885-69468137:+|nuORF ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5883483886719 3 389.254885 1164.74283 -0.23551 -9.1672E-05 -1.4258 -0.00055501 -1.6613 -0.00064668 389.2546656128328 41.911 0.20654 41.911 41.804 42.011 0 18 10 2 0 0 0 0.61855 1 22657 22657 0.23584 0.23584 1 2693800 72866 11050 48727 49782 84792 84792 0.16704359936261426 VRRRLPRGR 9 Unmodified _VRRRLPRGR_ 0 0 0 ENST00000227507.2_1_11:69467885-69468137:+|nuORF ENST00000227507.2_1_11:69467885-69468137:+|nuORF ENST00000227507.2_1_11:69467885-69468137:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 389.254885 1164.74283 -0.23551 -9.1672E-05 -1.4258 -0.00055501 -1.6613 -0.00064668 389.2546656128328 41.911 0.20654 41.911 41.804 42.011 0 0 0 NaN 0.23584 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2693800 72867 11050 48727 49782 0.16704359936261426 VRRRPKARP 9 Unmodified _VRRRPKARP_ 0 0 0 REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B REV__nc|ENSG00000288701|Q5JSZ5|PRRC2B MSMS AL20221201_MKP_PDAC_01 4 568.3699340820312 2 568.36779 1134.72103 NaN NaN NaN NaN NaN NaN NaN 108.21 1 102.04 101.54 102.54 -6.1757 0 0 0 0.86031 1 72331 72331 0.52476 0 1 + 72868 30024 48728 49783 84793 84793 0.1590555518769179 VRRRRGAPGR 10 Unmodified _VRRRRGAPGR_ 0 0 0 ENST00000444380.5_1_2:85828554-85829758:-|nuORF;ENST00000306353.7_2_2:85828206-85829758:-|nuORF ENST00000444380.5_1_2:85828554-85829758:-|nuORF ENST00000444380.5_1_2:85828554-85829758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.865966796875 2 590.865946 1179.71734 NaN NaN NaN NaN NaN NaN NaN 96.844 1 96.844 96.344 97.344 0 0 0 0 1.0061 1 53516 53516 0 0 1 72869 11626 48729 49784 84794 84794 0.13466885413845375 VRRRRGRH 8 Unmodified _VRRRRGRH_ 0 0 0 ENST00000370282.7_1_1:93645835-93645964:-|nuORF ENST00000370282.7_1_1:93645835-93645964:-|nuORF ENST00000370282.7_1_1:93645835-93645964:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.8406372070312 2 546.839731 1091.66491 1.5517 0.00084856 0.17851 9.7617E-05 1.7303 0.00094617 546.8396675763007 92.502 0.66565 92.532 92.259 92.925 0.030197 89 25 5 0 0 0 0.81107 2 51457 51457;51559 0 0 1 179890000 72870 12326 48730 49785 84795;84796 84795 0.12274347070888325 VRRRRRPRRRR 11 Unmodified _VRRRRRPRRRR_ 0 0 0 REV__ENSG00000185163|ENST00000397333|DDX51 REV__ENSG00000185163|ENST00000397333|DDX51 MSMS AL20221201_MKP_PDAC_01 4 810.5285034179688 2 810.528147 1619.04174 NaN NaN NaN NaN NaN NaN NaN 107.24 1 101.07 100.57 101.57 -6.1757 0 0 0 0.9435 1 71743 71743 0 0 1 + 72871 23479 48731 49786 84797 84797 0.2569825062146265 VRRRRRRRRRR 11 Unmodified _VRRRRRRRRRR_ 0 0 0 REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF REV__ENST00000554879.5_1_14:71374480-71476401:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 840.0546264648438 2 840.052321 1678.09009 NaN NaN NaN NaN NaN NaN NaN 29.147 1 25.845 25.345 26.345 -3.3016 0 0 0 0.9435 1 16337 16337 0 0 1 + 72872 28760 48732 49787 84798 84798 0.27816744261349413 VRRRSRHPPAL 11 Unmodified _VRRRSRHPPAL_ 0 0 0 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 ENSG00000124203|ENST00000371030|ZNF831 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.9080200195312 2 672.907811 1343.80107 NaN NaN NaN NaN NaN NaN NaN 15.361 1 15.367 14.867 15.867 0.0057774 0 0 0 0.9435 1 7652 7652 0 0 1 72873 3761 48733 49788 84799 84799 0.1429199679089379 VRRTWRRRRRM 11 Unmodified _VRRTWRRRRRM_ 0 0 0 REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 814.983154296875 2 814.984392 1627.95423 NaN NaN NaN NaN NaN NaN NaN 82.455 1 82.517 82.017 83.017 0.062004 0 0 0 0.9435 1 45616 45616 0 0 1 + 72874 25200 48734 49789 84800 84800 0.16537288635663572 VRRVGGAFGG 10 Unmodified _VRRVGGAFGG_ 0 0 0 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 ENSG00000138356|ENST00000374700|AOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 975.3865356445312 1 975.548274 974.540997 -0.65425 -0.00063825 0.011588 1.1304E-05 -0.64266 -0.00062694 975.5520871837705 18.772 0.013199 18.795 18.788 18.801 0.023106 5 3 2 0 0 0 0.72607 1 9438 9438 0 0 1 386450 72875 5042 48735 49790 84801 84801 0.052708314600636186 VRRVRLLMLL 10 Unmodified _VRRVRLLMLL_ 0 0 0 REV__ENST00000435523.5_1_7:130737210-130773109:-|nuORF REV__ENST00000435523.5_1_7:130737210-130773109:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.9212036132812 2 634.92101 1267.82747 NaN NaN NaN NaN NaN NaN NaN 102.95 1 102.91 102.41 103.41 -0.047928 0 0 0 1.0061 1 57178 57178 0 0 1 + 72876 26958 48736 49791 84802 84802 0.20426549638023062 VRSGYYKVL 9 Unmodified _VRSGYYKVL_ 0 0 0 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2093505859375 3 362.209836 1083.60768 -0.28724 -0.00010404 0.10692 3.8729E-05 -0.18032 -6.5313E-05 362.2097406192305 31.984 0.2639 32.014 31.866 32.13 0.030106 28 11 4 0 0 0 0.19361 1 16752 16752 28.234 6.6435 1 4649700 72877 7488 48737 49792 84803 84803 0.06922022231287883 VRSGYYKVL 9 Unmodified _VRSGYYKVL_ 0 0 0 ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A ENSG00000166441|ENST00000314138|RPL27A MSMS AL20221201_MKP_PDAC_01 4 362.2103271484375 3 362.209836 1083.60768 NaN NaN NaN NaN NaN NaN NaN 35.72 1 31.527 31.027 32.027 -4.1928 0 0 0 0.13463 1 20764 20764 42.835 21.298 1 72878 7488 48737 49792 84804 84804 0.06922022231287883 VRSHVSRQAM 10 Unmodified _VRSHVSRQAM_ 0 0 0 ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3;ENST00000467925.5_1_2:42935083-42946163:+|nuORF ENSG00000057935|ENST00000405094|MTA3 ENSG00000057935|ENST00000405094|MTA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8768310546875 3 390.876863 1169.60876 1.4233 0.00055634 -0.72086 -0.00028177 0.70247 0.00027458 390.8765619039926 20.136 0.38825 17.48 17.275 17.663 -2.6564 66 26 3 0 0 0 0.48505 1 10769 10769 10.899 0 1 20638000 72879 798 48738 49793 84805 84805 0.030739133285351272 VRSRPLII 8 Unmodified _VRSRPLII_ 0 0 0 REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.3173828125 2 477.316369 952.618185 0.43842 0.00020926 1.1416 0.00054491 1.58 0.00075417 477.31688397017643 103.5 0.023277 103.4 103.39 103.41 -0.10458 6 5 2 0 0 0 0.81107 1 56461 56461 0 0 1 210280 + 72880 19205 48739 49794 84806 84806 0.1399804967638829 VRSRPLII 8 Unmodified _VRSRPLII_ 0 0 0 REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.3168029785156 2 477.316369 952.618185 -0.6067 -0.00028959 0.69368 0.0003311 0.086975 4.1515E-05 477.3169436357568 103.51 0.23644 103.46 103.36 103.59 -0.04792 15 9 2 0 0 0 0.81107 1 57484 57484 0 0 1 1780700 + 72881 19205 48739 49794 84807 84807 0.1399804967638829 VRSRPLII 8 Unmodified _VRSRPLII_ 0 0 0 REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C REV__nc|ENSG00000119703|Q53FD0-2|ZC2HC1C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 477.316369 952.618185 0.43842 0.00020926 1.1416 0.00054491 1.58 0.00075417 477.31688397017643 103.5 0.023277 103.4 103.39 103.41 -0.10458 -0.032117 8.4222E-05 NaN 0 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 210280 + 72882 19205 48739 49794 0.1399804967638829 VRSSSFSDL 9 Unmodified _VRSSSFSDL_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2510681152344 2 499.251089 996.487624 NaN NaN NaN NaN NaN NaN NaN 18.967 1 18.973 18.473 19.473 0.0060463 0 0 0 0.81228 1 9632 9632 5.7319 2.1354 1 + 72883 24081 48740 49795 84808 84808 -0.010760108331282936 VRTKKKIVKK 10 Unmodified _VRTKKKIVKK_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.4361572265625 2 614.434807 1226.85506 NaN NaN NaN NaN NaN NaN NaN 23.929 1 23.951 23.451 24.451 0.021185 0 0 0 1.0061 1 12334 12334 0 0 1 + 72884 23576 48741 49796 84809 84809 0.2507077616987772 VRTPYTMSY 9 Oxidation (M) _VRTPYTM(Oxidation (M))SY_ VRTPYTM(1)SY VRTPYTM(50)SY 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2687377929688 2 567.268424 1132.5223 0.80869 0.00045874 -0.29811 -0.00016911 0.51057 0.00028963 567.2682279081437 29.699 0.18328 29.619 29.46 29.643 -0.080431 10 7 2 0 0 0 0.040683 1 15363 15363 49.554 24.155 1 6683300 72885 8379;16567 48742 49797 84810 84810 1426 -0.038665110166903105 VRTPYTMSY 9 Oxidation (M) _VRTPYTM(Oxidation (M))SY_ VRTPYTM(1)SY VRTPYTM(66)SY 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7639770507812 2 567.268424 1132.5223 1.4778 0.00083833 -4.1645 -0.0023624 -2.6867 -0.0015241 567.266537403689 33.794 0.38995 29.809 29.539 29.929 -3.9853 46 21 3 0 0 0 0.017075 1 19317 19317 66.457 22.598 1 11304000 72886 8379;16567 48742 49797 84811 84811 1426 -0.038665110166903105 VRTPYTMSY 9 Oxidation (M) _VRTPYTM(Oxidation (M))SY_ VRTPYTM(1)SY VRTPYTM(58)SY 0 0 1 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MSMS AL20221201_MKP_PDAC_01 4 567.2686157226562 2 567.268424 1132.5223 NaN NaN NaN NaN NaN NaN NaN 33.419 1 29.434 28.934 29.934 -3.9853 0 0 0 0.049786 1 19165 19165 57.722 27.085 1 72887 8379;16567 48742 49797 84812 84812 1426 -0.038665110166903105 VRTPYTMSY 9 Unmodified _VRTPYTMSY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7643432617188 2 559.270967 1116.52738 0.6457 0.00036112 -3.2437 -0.0018141 -2.598 -0.001453 559.2711877995389 45.433 0.47459 40.478 40.239 40.713 -4.9549 79 32 3 0 0 0 0.013609 2 27829 27829;27983 70.332 32.358 1 30203000 72888 8379;16567 48742 49798 84813;84814 84813 -0.02622207154058742 VRTPYTMSY 9 Unmodified _VRTPYTMSY_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.270967 1116.52738 0.78948 0.00044154 -1.7707 -0.0009903 -0.98121 -0.00054876 559.2709411064451 40.501 0.10635 40.199 40.15 40.256 -0.30139 -0.13933 0.0013247 NaN 70.332 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 582580 72889 8379;16567 48742 49798 -0.02622207154058742 VRTRLDQTWR 10 Unmodified _VRTRLDQTWR_ 0 0 0 REV__ENSG00000169919|ENST00000304895|GUSB REV__ENSG00000169919|ENST00000304895|GUSB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.87255859375 2 665.87056 1329.72657 NaN NaN NaN NaN NaN NaN NaN 91.168 1 90.673 90.173 91.173 -0.49457 0 0 0 0.99514 1 49837 49837 1.1933 0.23107 1 + 72890 22437 48743 49799 84815 84815 0.0748918918882282 VRTRRRRK 8 Unmodified _VRTRRRRK_ 0 0 0 ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B;ENSG00000179588|ENST00000319555|ZFPM1 ENSG00000160685|ENST00000535420|ZBTB7B ENSG00000160685|ENST00000535420|ZBTB7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3714599609375 2 564.370864 1126.72718 NaN NaN NaN NaN NaN NaN NaN 104.64 1 104.59 104.09 105.09 -0.048737 0 0 0 0.97444 1 58101 58101 0 0 1 72891 6741 48744 49800 84816 84816 0.16888073419204375 VRVDRDYVL 9 Unmodified _VRVDRDYVL_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.8807373046875 3 378.880379 1133.61931 0.009217 3.4921E-06 0.64312 0.00024367 0.65234 0.00024716 378.8807093955284 37.819 0.26714 37.819 37.68 37.947 0 28 12 3 0 0 0 0.2289 1 20136 20136 20.581 10.43 1 6454300 72892 2679 48745 49801 84817 84817 0.05784219254610434 VRVDRDYVL 9 Unmodified _VRVDRDYVL_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.8805236816406 3 378.880379 1133.61931 1.4321 0.0005426 -1.3975 -0.00052949 0.034603 1.3111E-05 378.87984069158546 42.523 0.34173 37.839 37.592 37.934 -4.6846 31 22 2 0 0 0 0.171 1 25642 25642 26.021 11.615 1 16407000 72893 2679 48745 49801 84818 84818 0.05784219254610434 VRVDRDYVL 9 Unmodified _VRVDRDYVL_ 0 0 0 nc|ENSG00000109854|Q9BUP3-3|HTATIP2;ENSG00000109854|ENST00000451739|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 nc|ENSG00000109854|Q9BUP3-3|HTATIP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 378.880379 1133.61931 0.028438 1.0775E-05 0.76286 0.00028903 0.7913 0.00029981 379.21492336271484 38.073 0.14128 37.801 37.761 37.902 -0.27133 -0.018473 0.00065813 NaN 26.021 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1315300 72894 2679 48745 49801 0.05784219254610434 VRVGALLL 8 Unmodified _VRVGALLL_ 0 0 0 ENSG00000108947|ENST00000226091|EFNB3 ENSG00000108947|ENST00000226091|EFNB3 ENSG00000108947|ENST00000226091|EFNB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 840.5678100585938 1 840.566549 839.559273 1.5274 0.0012838 1.0486 0.00088139 2.5759 0.0021652 840.5672829309437 105.54 0.27277 99.361 99.262 99.535 -6.1757 38 28 2 0 0 0 0.81107 1 70697 70697 0 0 1 7100900 72895 2619 48746 49802 84819 84819 0.13307573382053306 VRVKKLKGS 9 Unmodified _VRVKKLKGS_ 0 0 0 REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.8429260253906 2 507.842751 1013.67095 -0.41258 -0.00020953 1.2803 0.0006502 0.86773 0.00044067 507.84316393147196 103.54 0.16711 103.5 103.4 103.57 -0.04792 13 6 3 0 0 0 0.62242 1 57493 57493 0 0 1 1607400 + 72896 27309 48747 49803 84820 84820 0.16466007739199995 VRVKKLKGS 9 Unmodified _VRVKKLKGS_ 0 0 0 REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF REV__ENST00000460870.1_1_1:208383501-208390355:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 507.842751 1013.67095 -0.41258 -0.00020953 1.2803 0.0006502 0.86773 0.00044067 507.84316393147196 103.54 0.16711 103.5 103.4 103.57 -0.04792 0 0 NaN 0 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1607400 + 72897 27309 48747 49803 0.16466007739199995 VRVLKVVKGLL 11 Unmodified _VRVLKVVKGLL_ 0 0 0 ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENST00000543677.1_1_12:121469378-121476732:-|nuORF ENST00000543677.1_1_12:121469378-121476732:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.4343872070312 2 612.431733 1222.84891 NaN NaN NaN NaN NaN NaN NaN 15.761 1 15.766 15.266 16.266 0.0055504 0 0 0 0.9435 1 7870 7870 0 0 1 72898 15073 48748 49804 84821 84821 0.24640257938381183 VRVLNVSL 8 Unmodified _VRVLNVSL_ 0 0 0 REV__ENST00000603928.2_2_9:136891784-136891907:+|nuORF REV__ENST00000603928.2_2_9:136891784-136891907:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.2877502441406 2 450.287277 898.560001 1.717 0.00077313 0.25345 0.00011413 1.9704 0.00088725 450.2874890779993 103.44 0.052094 97.26 97.23 97.282 -6.1757 6 5 2 0 0 0 0.80722 1 69362 69362 2.3027 0 1 9736300 + 72899 29282 48749 49805 84822 84822 0.10666368031104412 VRVLRLLRATK 11 Unmodified _VRVLRLLRATK_ 0 0 0 REV__nc|ENSG00000173826|Q9H252-2|KCNH6;REV__ENST00000473610.5_1_7:150648470-150652738:-|nuORF REV__nc|ENSG00000173826|Q9H252-2|KCNH6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.9497680664062 2 662.948613 1323.88267 NaN NaN NaN NaN NaN NaN NaN 83.99 1 84.053 83.553 84.553 0.063171 0 0 0 0.94337 1 46469 46469 0 0 1 + 72900 22753;17285 48750 49806 84823 84823 0.23368679430109296 VRVLRRLAA 9 Unmodified _VRVLRRLAA_ 0 0 0 ENST00000522601.5_1_8:8094652-8094763:+|nuORF ENST00000522601.5_1_8:8094652-8094763:+|nuORF ENST00000522601.5_1_8:8094652-8094763:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.3531494140625 2 527.353817 1052.69308 NaN NaN NaN NaN NaN NaN NaN 109.34 1 103.17 102.67 103.67 -6.1757 0 0 0 0.8622 1 73027 73027 0 0 1 72901 14758 48751 49807 84824 84824 0.16884232207576133 VRVNKLNS 8 Unmodified _VRVNKLNS_ 0 0 0 REV__ENSG00000179057|ENST00000513874|IGSF22 REV__ENSG00000179057|ENST00000513874|IGSF22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2799987792969 2 465.279983 928.545414 0.17429 8.1094E-05 0.36576 0.00017018 0.54005 0.00025127 465.2800120749506 76.456 0.75534 76.504 76.299 77.054 0.047951 62 31 3 0 0 0 0.81007 1 42244 42244 0.6015 0 1 7993300 + 72902 23082 48752 49808 84825 84825 0.07828295882950442 VRVRRPLLGL 10 Unmodified _VRVRRPLLGL_ 0 0 0 ENST00000414380.1_1_9:130511774-130517187:-|nuORF ENST00000414380.1_1_9:130511774-130517187:-|nuORF ENST00000414380.1_1_9:130511774-130517187:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.896240234375 2 589.895849 1177.77715 NaN NaN NaN NaN NaN NaN NaN 89.055 1 89.055 88.555 89.555 0 0 0 0 1.0061 1 49282 49282 0 0 1 72903 13010 48753 49809 84826 84826 0.1953676330451799 VRVRRQRIL 9 Unmodified _VRVRRQRIL_ 0 0 0 REV__ENST00000498085.1_1_19:50222822-50223059:-|nuORF REV__ENST00000498085.1_1_19:50222822-50223059:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3973388671875 2 598.396548 1194.77854 1.0191 0.00060982 -0.85746 -0.0005131 0.16162 9.6716E-05 598.393848923602 105.79 0.29888 99.617 99.535 99.834 -6.1757 51 35 3 0 0 0 0.61256 1 70832 70832 0.6015 0 1 6876000 + 72904 27989 48754 49810 84827 84827 0.1889439739327372 VRVRRVGR 8 Unmodified _VRVRRVGR_ 0 0 0 ENST00000463472.1_1_22:50969089-50969740:-|nuORF;ENST00000469660.1_1_22:50969089-50970101:-|nuORF ENST00000463472.1_1_22:50969089-50969740:-|nuORF ENST00000463472.1_1_22:50969089-50969740:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.328857421875 2 499.328134 996.641714 1.6851 0.00084144 0.035424 1.7688E-05 1.7206 0.00085912 499.32767923519896 103.58 0.19986 97.404 97.326 97.526 -6.1757 73 42 2 0 0 0 0.81107 1 69431 69431 0 0 1 19230000 72905 13694 48755 49811 84828 84828 0.14325908233570317 VRVRVGGP 8 Unmodified _VRVRVGGP_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2640075683594 2 420.264136 838.51372 0.028542 1.1995E-05 0.025474 1.0706E-05 0.054015 2.2701E-05 420.26395940497963 90.6 0.63274 90.6 90.273 90.906 0 44 31 2 0 0 0 0.81107 2 50094 50094;50192 0 0 1 673840 72906 11597 48756 49812 84829;84830 84829 0.08800347919668638 VRVRVGGP 8 Unmodified _VRVRVGGP_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2646484375 2 420.264136 838.51372 NaN NaN NaN NaN NaN NaN NaN 91.277 1 91.277 90.777 91.777 0 0 0 0 0.97444 1 50481 50481 0 0 1 72907 11597 48756 49812 84831 84831 0.08800347919668638 VRVRVGGP 8 Unmodified _VRVRVGGP_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2649536132812 2 420.264136 838.51372 NaN NaN NaN NaN NaN NaN NaN 91.453 1 91.453 90.953 91.953 0 0 0 0 0.97444 1 50577 50577 0 0 1 72908 11597 48756 49812 84832 84832 0.08800347919668638 VRVRVGGP 8 Unmodified _VRVRVGGP_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 420.264136 838.51372 0.42987 0.00018066 0.44399 0.00018659 0.87386 0.00036725 420.2642818512761 91.217 0.50845 90.722 90.44 90.948 -0.49457 0.030327 0.00020448 NaN 0 46 23 3 NaN NaN NaN NaN 0 NaN NaN 0 842690 72909 11597 48756 49812 0.08800347919668638 VRVRVGGP 8 Unmodified _VRVRVGGP_ 0 0 0 ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF ENST00000303538.12_1_4:39929740-39979529:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 420.264136 838.51372 0.62806 0.00026395 -0.43281 -0.00018189 0.19525 8.2056E-05 420.2638450296765 90.717 0.15903 90.753 90.634 90.793 0.036499 0.061523 -0.00053249 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1526700 72910 11597 48756 49812 0.08800347919668638 VRVSLGPR 8 Unmodified _VRVSLGPR_ 0 0 0 ENST00000374199.8_1_9:116037962-116038841:+|nuORF;ENST00000374198.4_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2766723632812 2 442.277244 882.539935 0.29666 0.0001312 0.81254 0.00035937 1.1092 0.00049057 442.2775721754615 93.286 0.54018 93.286 92.971 93.512 0 51 32 2 0 0 0 0.81107 2 51467 51467;51563 0 0 1 443010 72911 12436 48757 49813 84833;84834 84833 0.09396617091147164 VRVSLGPR 8 Unmodified _VRVSLGPR_ 0 0 0 ENST00000374199.8_1_9:116037962-116038841:+|nuORF;ENST00000374198.4_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2784118652344 2 442.277244 882.539935 0.36027 0.00015934 0.45948 0.00020322 0.81976 0.00036256 442.2774138864431 93.889 0.69865 93.468 92.994 93.692 -0.42044 54 31 2 0 0 0 0.81107 3 51119 51119;51234;51327 0 0 1 432590 72912 12436 48757 49813 84835;84836;84837 84835 0.09396617091147164 VRVSLGPR 8 Unmodified _VRVSLGPR_ 0 0 0 ENST00000374199.8_1_9:116037962-116038841:+|nuORF;ENST00000374198.4_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF ENST00000374199.8_1_9:116037962-116038841:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2771301269531 2 442.277244 882.539935 NaN NaN NaN NaN NaN NaN NaN 94.955 1 94.587 94.087 95.087 -0.36814 0 0 0 0.97444 1 51870 51870 0 0 1 72913 12436 48757 49813 84838 84838 0.09396617091147164 VRVSSIGV 8 Unmodified _VRVSSIGV_ 0 0 0 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 ENSG00000145362|ENST00000357077|ANK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.4951171875 1 816.493778 815.486502 -0.39697 -0.00032412 2.0714 0.0016913 1.6744 0.0013672 816.4952306808593 103.13 0.091827 103.09 103.03 103.12 -0.047928 9 3 3 0 0 0 0.81107 1 57275 57275 0 0 1 15200000 72914 5688 48758 49814 84839 84839 0.07137819588638195 VRVVELRG 8 Unmodified _VRVVELRG_ 0 0 0 REV__nc|ENSG00000131480|O75106-2|AOC2 REV__nc|ENSG00000131480|O75106-2|AOC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2906494140625 2 464.290351 926.566149 NaN NaN NaN NaN NaN NaN NaN 96.407 1 96.102 95.602 96.602 -0.30472 0 0 0 0.97444 1 52650 52650 0 0 1 + 72915 19796 48759 49815 84840 84840 0.09992886262625689 VRVVGLGGLL 10 Unmodified _VRVVGLGGLL_ 0 0 0 REV__ENST00000284617.6_1_1:229462728-229478156:-|nuORF REV__ENST00000284617.6_1_1:229462728-229478156:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.8243713378906 2 491.824027 981.633501 NaN NaN NaN NaN NaN NaN NaN 104.44 1 104.39 103.89 104.89 -0.048737 0 0 0 1.0061 1 57984 57984 0 0 1 + 72916 25211 48760 49816 84841 84841 0.14194916473593366 VRVVVGSGL 9 Unmodified _VRVVVGSGL_ 0 0 0 ENST00000592120.5_2_16:4898157-4898244:+|nuORF ENST00000592120.5_2_16:4898157-4898244:+|nuORF ENST00000592120.5_2_16:4898157-4898244:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 885.5521850585938 1 885.551628 884.544351 1.0109 0.00089525 1.4434 0.0012782 2.4543 0.0021734 885.5524723114607 105.75 0.27293 99.578 99.476 99.749 -6.1757 42 33 2 0 0 0 0.62242 1 70914 70914 0 0 1 3744900 72917 15716 48761 49817 84842 84842 0.09746081514060734 VRVVVLVT 8 Unmodified _VRVVVLVT_ 0 0 0 ENST00000396821.7_1_22:38882394-38883916:-|nuORF ENST00000396821.7_1_22:38882394-38883916:-|nuORF ENST00000396821.7_1_22:38882394-38883916:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 887.6045532226562 1 884.592764 883.585488 1.0609 0.0009385 0.24111 0.00021328 1.302 0.0011518 884.5926873617935 105.28 0.25874 99.102 98.947 99.206 -6.1757 168 63 4 0 0 0 0.81107 1 70514 70514 0 0 1 877460000 72918 12807 48762 49818 84843 84843 0.1390384255353183 VRVVVPGV 8 Unmodified _VRVVVPGV_ 0 0 0 ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX ENSG00000139531|ENST00000266971|SUOX MULTI-MSMS AL20221201_MKP_PDAC_01 4 824.5366821289062 1 824.535249 823.527973 1.7144 0.0014136 1.7931 0.0014785 3.5075 0.0028921 824.5363425825186 105.53 0.18578 99.354 99.269 99.455 -6.1757 30 17 2 0 0 0 0.81107 1 70678 70678 0 0 1 25160000 72919 5164 48763 49819 84844 84844 0.10915000347961268 VRWGSLARQ 9 Unmodified _VRWGSLARQ_ 0 0 0 ENST00000247461.8_1_5:179125942-179126098:+|nuORF ENST00000247461.8_1_5:179125942-179126098:+|nuORF ENST00000247461.8_1_5:179125942-179126098:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.7306823730469 3 358.205197 1071.59376 0.60086 0.00021523 2.4237 0.00086819 3.0246 0.0010834 358.20586736486405 36.517 0.37882 36.517 36.311 36.69 0 27 18 3 0 0 0 0.21834 1 19315 19315 0.96228 0 1 6498200 72920 11127 48764 49820 84845 84845 0.06082789522861276 VRWHFGDHF 9 Unmodified _VRWHFGDHF_ 0 0 0 ENSG00000135973|ENST00000258456|GPR45 ENSG00000135973|ENST00000258456|GPR45 ENSG00000135973|ENST00000258456|GPR45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8614501953125 3 400.86143 1199.56246 NaN NaN NaN NaN NaN NaN NaN 58.963 1 58.902 58.402 59.402 -0.060719 0 0 0 0.83812 1 32128 32128 2.9952 1.5401 1 72921 4770 48765 49821 84846 84846 -0.02933783511252841 VRWHTGGA 8 Unmodified _VRWHTGGA_ 0 0 0 nc|ENSG00000161013|Q9UQ53-3|MGAT4B nc|ENSG00000161013|Q9UQ53-3|MGAT4B nc|ENSG00000161013|Q9UQ53-3|MGAT4B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2303161621094 2 442.230294 882.446034 NaN NaN NaN NaN NaN NaN NaN 93.081 1 92.624 92.124 93.124 -0.4574 0 0 0 0.97444 1 50872 50872 0.69038 0 1 72922 16318 48766 49822 84847 84847 0.00010897988863689534 VRWLFRML 8 Unmodified _VRWLFRML_ 0 0 0 REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2208862304688 3 374.21979 1119.63754 1.489 0.00055721 0.43677 0.00016345 1.9258 0.00072066 374.2198514240248 42.493 1.0825 37.809 37.46 38.542 -4.6846 254 71 5 0 0 0 0.78849 1 25924 25924 6.7232 6.7232 1 2966099999.9999995 + 72923 27671 48767 49823 84848 84848 0.08250682695620526 VRWLFRML 8 Unmodified _VRWLFRML_ 0 0 0 REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF REV__ENST00000480340.1_1_1:153902104-153902251:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1802673339844 3 374.21979 1119.63754 1.489 0.00055721 0.43677 0.00016345 1.9258 0.00072066 374.2198514240248 42.493 1.0825 37.809 37.46 38.542 -4.6846 254 71 5 0 0 0 8.7369 1 26021 26021 10.824 10.824 1 2966099999.9999995 + 72924 27671 48767 49823 84849 84849 0.08250682695620526 VRWLRLRRGAL 11 Unmodified _VRWLRLRRGAL_ 0 0 0 ENST00000603271.1_3_19:58331137-58367481:+|nuORF;ENST00000593873.5_3_19:58331110-58369965:+|nuORF ENST00000603271.1_3_19:58331137-58367481:+|nuORF ENST00000603271.1_3_19:58331137-58367481:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.9657287597656 3 465.965112 1394.87351 1.5365 0.00071594 0.65941 0.00030726 2.1959 0.0010232 465.96504665955405 104.25 0.092926 98.079 98.014 98.107 -6.1757 11 4 3 0 0 0 0.74157 1 69834 69834 0.094841 0 1 35718000 72925 15741 48768 49824 84850 84850 0.19186330864454249 VRWPTPFF 8 Unmodified _VRWPTPFF_ 0 0 0 ENST00000400198.7_2_13:107220308-107220443:-|nuORF ENST00000400198.7_2_13:107220308-107220443:-|nuORF ENST00000400198.7_2_13:107220308-107220443:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.5237426757812 3 350.523755 1048.54944 NaN NaN NaN NaN NaN NaN NaN 19.703 1 19.732 19.232 20.232 0.028357 0 0 0 0.97348 1 9950 9950 3.9444 0 1 72926 12871 48769 49825 84851 84851 0.027103853766675456 VSAALVILS 9 Unmodified _VSAALVILS_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 872.5464477539062 1 872.545145 871.537869 -0.14123 -0.00012323 0.49928 0.00043564 0.35804 0.00031241 872.545322697226 88.758 0.23863 88.253 88.156 88.394 -0.50423 16 9 2 0 0 0 0.2143 1 48534 48534 21.747 0 1 405910 72927 4143 48770 49826 84852 84852 0.09696143562666748 VSACSAQDVAY 11 Unmodified _VSACSAQDVAY_ 0 0 0 nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2 nc|ENSG00000148702|Q14520-2|HABP2 nc|ENSG00000148702|Q14520-2|HABP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2446899414062 2 557.247689 1112.48082 0.25672 0.00014306 -2.6866 -0.0014971 -2.4298 -0.001354 557.2455661616502 48.982 0.3234 48.982 48.828 49.152 0 22 15 2 0 0 0 0.54936 1 26927 26927 13.906 2.2658 1 3395100 72928 5956 48771 49827 84853 84853 -0.07091691776031439 VSADVIDLF 9 Unmodified _VSADVIDLF_ 0 0 0 ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7610473632812 2 489.760758 977.506963 0.20307 9.9454E-05 0.474 0.00023215 0.67707 0.0003316 489.7608831887326 90.623 0.28053 90.623 90.484 90.764 0 23 12 2 0 0 0 0.30562 1 50118 50118 16.942 4.4107 1 723850 72929 9147 48772 49828 84854 84854 0.017309454577684846 VSADVIDLF 9 Unmodified _VSADVIDLF_ 0 0 0 ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 ENSG00000183421|ENST00000332512|RIPK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7611694335938 2 489.760758 977.506963 0.59074 0.00028932 0.45103 0.0002209 1.0418 0.00051022 489.7608922732526 91.153 0.27024 90.659 90.51 90.78 -0.49458 18 11 2 0 0 0 0.28047 1 49820 49820 18.135 5.6034 1 533520 72930 9147 48772 49828 84855 84855 0.017309454577684846 VSAEIKELF 9 Unmodified _VSAEIKELF_ 0 0 0 ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46 ENSG00000118096|ENST00000264021|IFT46 ENSG00000118096|ENST00000264021|IFT46 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2911987304688 2 518.289682 1034.56481 0.68147 0.0003532 1.0511 0.00054479 1.7326 0.000898 518.2902964140455 60.057 0.27604 60.057 59.923 60.199 0 20 12 2 0 0 0 0.069655 1 33503 33503 40.239 9.6027 1 3098700 72931 3349 48773 49829 84856 84856 0.04891207383184337 VSAEIKELF 9 Unmodified _VSAEIKELF_ 0 0 0 ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46 ENSG00000118096|ENST00000264021|IFT46 ENSG00000118096|ENST00000264021|IFT46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2720947265625 2 518.289682 1034.56481 NaN NaN NaN NaN NaN NaN NaN 60.444 1 59.953 59.453 60.453 -0.49079 0 0 0 0.27852 1 32916 32916 26.268 2.2476 1 72932 3349 48773 49829 84857 84857 0.04891207383184337 VSAEIKELF 9 Unmodified _VSAEIKELF_ 0 0 0 ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46 ENSG00000118096|ENST00000264021|IFT46 ENSG00000118096|ENST00000264021|IFT46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.2905883789062 2 518.289682 1034.56481 NaN NaN NaN NaN NaN NaN NaN 60.521 1 60.031 59.531 60.531 -0.48932 0 0 0 0.061161 1 32958 32958 53.404 17.277 1 72933 3349 48773 49829 84858 84858 0.04891207383184337 VSAFVFPEK 9 Unmodified _VSAFVFPEK_ 0 0 0 REV__nc|ENSG00000020129|Q9UBB6-2|NCDN REV__nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.27978515625 2 512.279118 1022.54368 0.28066 0.00014378 1.1349 0.00058139 1.4156 0.00072517 512.7801974522383 63.067 0.16702 62.581 62.522 62.689 -0.48617 12 7 2 0 0 0 0.06294 1 34426 34426 41.84 5.7126 1 2385500 + 72934 17105 48774 49830 84859 84859 0.03331242074330021 VSAFVFPEK 9 Unmodified _VSAFVFPEK_ 0 0 0 REV__nc|ENSG00000020129|Q9UBB6-2|NCDN REV__nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.279118 1022.54368 0.58718 0.0003008 -0.4879 -0.00024994 0.099275 5.0857E-05 512.2790283126266 62.666 0.19204 62.644 62.525 62.717 -0.021618 0.031726 -0.00035711 NaN 41.84 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3214900 + 72935 17105 48774 49830 0.03331242074330021 VSAGIQTSF 9 Unmodified _VSAGIQTSF_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2382202148438 2 455.23745 908.460347 NaN NaN NaN NaN NaN NaN NaN 22.801 1 22.801 22.301 23.301 0 0 0 0 0.6306 1 11605 11605 11.64 0 1 72936 2594 48775 49831 84860 84860 0.0024550562648073537 VSAGIQTSF 9 Unmodified _VSAGIQTSF_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.2373352050781 2 455.23745 908.460347 0.46081 0.00020978 0.55503 0.00025267 1.0158 0.00046245 455.2377029741581 55.98 0.41222 50.059 49.8 50.212 -5.9211 50 23 3 0 0 0 0.013041 2 35586 35586;35714 71.922 17.147 1 41443000 72937 2594 48775 49831 84861;84862 84861 0.0024550562648073537 VSAGSARR 8 Unmodified _VSAGSARR_ 0 0 0 REV__ENST00000230859.7_2_5:6713434-6713641:+|nuORF REV__ENST00000230859.7_2_5:6713434-6713641:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2281494140625 2 402.227751 802.440949 NaN NaN NaN NaN NaN NaN NaN 109.71 1 103.53 103.03 104.03 -6.1757 0 0 0 0.97444 1 73253 73253 2.5775 0 1 + 72938 24814 48776 49832 84863 84863 0.03182594126224103 VSAIKPPD 8 Unmodified _VSAIKPPD_ 0 0 0 REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A REV__nc|ENSG00000131848|Q9BUG6-2|ZSCAN5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.466064453125 1 826.466895 825.459619 -0.20947 -0.00017312 -0.78886 -0.00065196 -0.99832 -0.00082508 826.4662241217495 70.495 0.55164 70.018 69.798 70.35 -0.47735 115 42 3 0 0 0 0.27285 1 38572 38572 58.679 3.9053 1 56483000 + 72939 19815 48777 49833 84864 84864 0.039907109774162564 VSALKKKK 8 Unmodified _VSALKKKK_ 0 0 0 ENST00000252804.8_1_2:1636874-1637096:-|nuORF ENST00000252804.8_1_2:1636874-1637096:-|nuORF ENST00000252804.8_1_2:1636874-1637096:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.3139038085938 2 451.313295 900.612037 1.708 0.00077087 -0.1234 -5.5691E-05 1.5847 0.00071517 451.3131875367005 105.3 0.09996 99.126 99.077 99.177 -6.1757 30 22 2 0 0 0 0.80992 1 70539 70539 0.69038 0 1 43056000 72940 11155 48778 49834 84865 84865 0.15775531444842272 VSALRQELRRR 11 Unmodified _VSALRQELRRR_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 692.4181518554688 2 692.418208 1382.82186 0.1406 9.7354E-05 -0.1715 -0.00011875 -0.0309 -2.1396E-05 692.4179888365217 100.98 0.13779 100.94 100.87 101 -0.04216 15 4 5 0 0 0 0.7453 1 56106 56106 0 0 1 31964000 72941 16188 48779 49835 84866 84866 0.14576542379859347 VSALSRGPQ 9 Unmodified _VSALSRGPQ_ 0 0 0 REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 457.9042358398438 2 457.756341 913.498129 0.29214 0.00013373 0.46816 0.0002143 0.7603 0.00034803 457.7566502124703 24.62 0.32899 21.736 21.559 21.888 -2.8831 33 17 2 0 0 0 0.12183 1 13324 13324 26.884 1.4843 1 9434400 + 72942 29634 48780 49836 84867 84867 0.03792016611953386 VSAMLHIH 8 Unmodified _VSAMLHIH_ 0 0 0 ENSG00000187037|ENST00000334425|GPR141 ENSG00000187037|ENST00000334425|GPR141 ENSG00000187037|ENST00000334425|GPR141 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.2454223632812 2 454.244555 906.474557 NaN NaN NaN NaN NaN NaN NaN 21.522 1 21.536 21.036 22.036 0.013796 0 0 0 0.97444 1 11027 11027 2.8892 0 1 72943 9529 48781 49837 84868 84868 0.01757879573790433 VSAPRRPPG 9 Unmodified _VSAPRRPPG_ 0 0 0 REV__ENST00000286648.9_1_4:71859257-71859437:+|nuORF REV__ENST00000286648.9_1_4:71859257-71859437:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7733154296875 2 468.772326 935.530098 0.43471 0.00020378 2.0317 0.0009524 2.4664 0.0011562 468.77315976978684 76.977 0.27396 76.977 76.759 77.033 0 25 19 2 0 0 0 0.5029 1 42811 42811 7.2892 0 1 2069900 + 72944 25224 48782 49838 84869 84869 0.05975429085754058 VSASSAGR 8 Unmodified _VSASSAGR_ 0 0 0 REV__ENSG00000174498|ENST00000327987|IGDCC3 REV__ENSG00000174498|ENST00000327987|IGDCC3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 734.8329467773438 1 734.379143 733.371866 -0.45965 -0.00033756 2.3379 0.0017169 1.8783 0.0013794 734.3824576123762 41.662 0.22906 41.662 41.556 41.785 0 16 11 2 0 0 0 8.7369 1 22468 22468 18.135 0 1 2685200 + 72945 22796 48783 49839 84870 84870 -0.005484898933218574 VSATIQRY 8 Unmodified _VSATIQRY_ 0 0 0 nc|ENSG00000205560|Q92523-2|CPT1B;ENSG00000205560|ENST00000312108|CPT1B;nc|ENSG00000205560|Q92523-4|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B nc|ENSG00000205560|Q92523-2|CPT1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.2598876953125 2 469.258717 936.50288 1.0874 0.00051028 -0.70388 -0.0003303 0.38353 0.00017997 469.25860611838965 50.221 0.32092 44.682 44.518 44.839 -5.5391 35 20 2 0 0 0 0.55032 1 31473 31473 30.225 9.7712 1 13419000 72946 10371 48784 49840 84871 84871 0.032089007547028814 VSAVATSHLN 10 Unmodified _VSAVATSHLN_ 0 0 0 REV__nc|ENSG00000172148|Q8NGA2|OR7A2P REV__nc|ENSG00000172148|Q8NGA2|OR7A2P MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.7674560546875 2 499.766906 997.519259 0.76691 0.00038328 0.33786 0.00016885 1.1048 0.00055213 499.7670344132238 31.801 0.395 28.105 27.927 28.322 -3.6958 47 21 3 0 0 0 0.23548 1 18088 18088 31.268 0 1 42023000 + 72947 29784 48785 49841 84872 84872 0.02039981920813716 VSAVLDIR 8 Unmodified _VSAVLDIR_ 0 0 0 ENSG00000185278|ENST00000367701|ZBTB37;nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37 ENSG00000185278|ENST00000367701|ZBTB37 ENSG00000185278|ENST00000367701|ZBTB37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.7638549804688 2 436.763635 871.512717 0.91392 0.00039917 -0.30741 -0.00013426 0.60651 0.0002649 436.76346740023564 34.429 0.4907 30.333 30.074 30.565 -4.0951 85 28 4 0 0 0 0.25522 1 19891 19891 61.357 2.6787 1 150190000 72948 9357 48786 49842 84873 84873 0.07182088760100669 VSAVLPGG 8 Unmodified _VSAVLPGG_ 0 0 0 nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27 nc|ENSG00000143376|Q96L92-3|SNX27 nc|ENSG00000143376|Q96L92-3|SNX27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.7051086425781 2 350.205421 698.39629 0.35657 0.00012487 3.0221 0.0010584 3.3787 0.0011832 350.2067119482307 50.757 0.41405 50.757 50.582 50.996 0 41 23 2 0 0 0 0.81107 1 28093 28093 0 0 1 11400000 72949 5502 48787 49843 84874 84874 0.03502770260206489 VSAVPRHWVCH 11 Unmodified _VSAVPRHWVCH_ 0 0 0 ENST00000479621.5_1_2:106776713-106776821:-|nuORF ENST00000479621.5_1_2:106776713-106776821:-|nuORF ENST00000479621.5_1_2:106776713-106776821:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8877563476562 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 40.896 1 40.896 40.396 41.396 0 0 0 0 0.85601 1 22015 22015 4.7159 1.8726 1 72950 14041 48788 49844 84875 84875 0.01190790225246019 VSAWRLLGGF 10 Unmodified _VSAWRLLGGF_ 0 0 0 REV__ENST00000264192.7_1_2:158300458-158300560:-|nuORF REV__ENST00000264192.7_1_2:158300458-158300560:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.8082275390625 2 553.311284 1104.60801 0.81613 0.00045158 0.052883 2.9261E-05 0.86902 0.00048084 553.3106515475168 78.06 0.66388 71.884 71.409 72.073 -6.1757 66 37 3 0 0 0 0.20106 1 51063 51063 37.974 3.5723 1 26809000 + 72951 25063 48789 49845 84876 84876 0.05989441951146546 VSAWRRWCWRW 11 Unmodified _VSAWRRWCWRW_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.6023559570312 3 531.266573 1590.77789 1.1943 0.00063448 0.2034 0.00010806 1.3977 0.00074254 531.2665747683941 41.023 0.33841 36.415 36.227 36.566 -4.6079 47 20 3 0 0 0 0.71938 1 24569 24569 2.4348 0.97967 1 22182000 72952 16176 48790 49846 84877 84877 0.006132346818958467 VSAYRYDWS 9 Unmodified _VSAYRYDWS_ 0 0 0 REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.765625 2 573.764363 1145.51417 0.20861 0.00011969 1.2025 0.00068994 1.4111 0.00080964 573.7650096825444 28.303 0.25782 28.332 28.236 28.494 0.029566 17 10 2 0 0 0 0.23158 1 14731 14731 20.454 0 1 1277100 + 72953 26513 48791 49847 84878 84878 -0.052763219418238805 VSCCVVRPMH 10 Unmodified _VSCCVVRPMH_ 0 0 0 ENST00000605901.1_1_6:2988904-2989938:+|nuORF ENST00000605901.1_1_6:2988904-2989938:+|nuORF ENST00000605901.1_1_6:2988904-2989938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7669677734375 2 565.767014 1129.51948 0.19447 0.00011002 0.0022928 1.2972E-06 0.19676 0.00011132 565.7669819777565 44.805 0.9883 44.783 44.261 45.249 -0.022068 101 52 3 0 0 0 0.38092 1 24031 24031 22.736 1.1993 1 28680000 72954 15848 48792 49848 84879 84879 -0.0401038094685191 VSCCVVRPMH 10 Unmodified _VSCCVVRPMH_ 0 0 0 ENST00000605901.1_1_6:2988904-2989938:+|nuORF ENST00000605901.1_1_6:2988904-2989938:+|nuORF ENST00000605901.1_1_6:2988904-2989938:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7672729492188 2 565.767014 1129.51948 0.91344 0.0005168 -0.5189 -0.00029357 0.39455 0.00022322 565.7665048542416 58.343 1.5868 58.282 57.599 59.186 -0.060722 225 79 3 0 0 0 0.38092 1 31969 31969 22.736 1.1993 1 19319000 72955 15848 48792 49848 84880 84880 -0.0401038094685191 VSCDEWAFSL 10 Unmodified _VSCDEWAFSL_ 0 0 0 nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B;ENST00000556096.6_1_15:91550096-91560227:-|nuORF nc|ENSG00000184056|Q9H267-2|VPS33B nc|ENSG00000184056|Q9H267-2|VPS33B MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.1709289550781 3 386.17083 1155.49066 1.2575 0.00048559 -1.4635 -0.00056515 -0.20601 -7.9555E-05 386.1702097007471 30.32 0.21695 26.823 26.678 26.895 -3.497 15 10 2 0 0 0 0.66569 1 17104 17104 3.5871 0.95582 1 11050000 72956 9218 48793 49849 84881 84881 -0.08086503770641684 VSCESHVIAW 10 Unmodified _VSCESHVIAW_ 0 0 0 REV__ADAMTS16|p.R878H|1|0.14|ENSG00000145536|chr5:5242162-5242162|G/A|missense_variant REV__ADAMTS16|p.R878H|1|0.14|ENSG00000145536|chr5:5242162-5242162|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 565.7678833007812 2 565.768591 1129.52263 NaN NaN NaN NaN NaN NaN NaN 66.806 1 60.63 60.13 61.13 -6.1757 0 0 0 0.54588 1 43472 43472 24.021 0.23079 1 + 72957 16699 48794 49850 84882 84882 -0.03695091296845021 VSCSSDSCCC 10 Unmodified _VSCSSDSCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7682189941406 2 497.142663 992.270773 NaN NaN NaN NaN NaN NaN NaN 80.923 1 80.923 80.423 81.423 0 0 0 0 1.0061 1 44926 44926 0 0 1 + 72958 28447 48795 49851 84883 84883 -0.2256713703652622 VSCSSDSCCC 10 Unmodified _VSCSSDSCCC_ 0 0 0 REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF REV__ENST00000531526.5_1_11:45944386-45945084:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.1424865722656 2 497.142663 992.270773 NaN NaN NaN NaN NaN NaN NaN 96.443 1 96.138 95.638 96.638 -0.30472 0 0 0 1.0061 1 52669 52669 0 0 1 + 72959 28447 48795 49851 84884 84884 -0.2256713703652622 VSDAVADDEDE 11 Unmodified _VSDAVADDEDE_ 0 0 0 REV__nc|ENSG00000176771|O14513-2|NCKAP5 REV__nc|ENSG00000176771|O14513-2|NCKAP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7305297851562 2 582.73058 1163.44661 NaN NaN NaN NaN NaN NaN NaN 87.937 1 87.937 87.437 88.437 0 0 0 0 0.9435 1 48683 48683 0 0 1 + 72960 22943 48796 49852 84885 84885 -0.12857861453949226 VSDERHTGVM 10 Unmodified _VSDERHTGVM_ 0 0 0 REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7666015625 2 565.76658 1129.51861 0.91344 0.0005168 0.24855 0.00014062 1.162 0.00065742 565.7665048542416 58.343 1.5868 58.282 57.599 59.186 -0.060722 225 79 3 0 0 0 0.34249 2 31631 31631;32071 24.991 2.2547 1 19319000 + 72961 20453 48797 49853 84886;84887 84886 -0.040971807905634705 VSDERHTGVM 10 Unmodified _VSDERHTGVM_ 0 0 0 REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7672729492188 2 565.76658 1129.51861 1.2395 0.00070124 -0.093763 -5.3048E-05 1.1457 0.00064819 565.7666639052073 50.518 1.1803 44.979 44.424 45.604 -5.5391 233 74 4 0 0 0 0.13297 3 32031 31361;31766;32031 41.956 7.0235 1 223280000 + 72962 20453 48797 49853 84888;84889;84890 84890 -0.040971807905634705 VSDERHTGVM 10 Unmodified _VSDERHTGVM_ 0 0 0 REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7679443359375 2 565.76658 1129.51861 0.57061 0.00032283 0.52578 0.00029747 1.0964 0.0006203 565.7670026217187 65.58 0.59637 59.404 58.897 59.494 -6.1757 53 33 2 0 0 0 0.50362 1 42348 42348 16.149 0 1 11022000 + 72963 20453 48797 49853 84891 84891 -0.040971807905634705 VSDERHTGVM 10 Unmodified _VSDERHTGVM_ 0 0 0 REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 565.76658 1129.51861 0.19447 0.00011002 0.76975 0.0004355 0.96421 0.00054552 565.7669819777565 44.805 0.9883 44.783 44.261 45.249 -0.022068 -0.097975 0.00063713 NaN 41.956 101 52 3 NaN NaN NaN NaN 0 NaN NaN 0 28680000 + 72964 20453 48797 49853 -0.040971807905634705 VSDERHTGVM 10 Unmodified _VSDERHTGVM_ 0 0 0 REV__nc|ENSG00000140262|Q99081-4|TCF12 REV__nc|ENSG00000140262|Q99081-4|TCF12 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 565.76658 1129.51861 1.2395 0.00070124 -0.093763 -5.3048E-05 1.1457 0.00064819 565.7666639052073 50.518 1.1803 44.979 44.424 45.604 -5.5391 0.097975 -0.00033996 NaN 41.956 233 74 4 NaN NaN NaN NaN 0 NaN NaN 0 223280000 + 72965 20453 48797 49853 -0.040971807905634705 VSDGIARPL 9 Unmodified _VSDGIARPL_ 0 0 0 REV__ENST00000555243.1_1_14:89016912-89017582:-|nuORF REV__ENST00000555243.1_1_14:89016912-89017582:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2658386230469 2 464.266542 926.51853 0.50137 0.00023277 -1.0872 -0.00050475 -0.58582 -0.00027198 464.26595877940014 46.929 0.241 46.929 46.781 47.022 0 20 11 2 0 0 0 0.022193 1 25661 25661 61.357 0 1 5883000 + 72966 28766 48798 49854 84892 84892 0.052331872717559236 VSDHHPPDA 9 Unmodified _VSDHHPPDA_ 0 0 0 ENST00000396504.6_1_22:41923273-41923423:-|nuORF ENST00000396504.6_1_22:41923273-41923423:-|nuORF ENST00000396504.6_1_22:41923273-41923423:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7205810546875 2 487.719956 973.425358 1.1559 0.00056375 -0.018635 -9.0886E-06 1.1373 0.00055466 487.7199929053774 20.666 0.36699 17.973 17.781 18.148 -2.693 50 23 3 0 0 0 0.32871 1 10967 10967 15.847 0 1 5964900 72967 12796 48799 49855 84893 84893 -0.06241737181483131 VSDKECNNHV 10 Unmodified _VSDKECNNHV_ 0 0 0 REV__ENSG00000174358|ENST00000304460|SLC6A19 REV__ENSG00000174358|ENST00000304460|SLC6A19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.7564086914062 2 572.756212 1143.49787 0.0041848 2.3969E-06 1.1249 0.00064431 1.1291 0.00064671 572.7567790046074 38.056 0.48582 38.073 37.753 38.239 0.01704 65 22 4 0 0 0 0.34249 1 20184 20184 24.991 1.2012 1 22600000 + 72968 22788 48800 49856 84894 84894 -0.06813771170209293 VSDKECNNHV 10 Unmodified _VSDKECNNHV_ 0 0 0 REV__ENSG00000174358|ENST00000304460|SLC6A19 REV__ENSG00000174358|ENST00000304460|SLC6A19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 572.756212 1143.49787 0.0041848 2.3969E-06 1.1249 0.00064431 1.1291 0.00064671 572.7567790046074 38.056 0.48582 38.073 37.753 38.239 0.01704 0 0 NaN 24.991 65 22 4 NaN NaN NaN NaN 0 NaN NaN 0 22600000 + 72969 22788 48800 49856 -0.06813771170209293 VSDLMRSHF 9 Unmodified _VSDLMRSHF_ 0 0 0 REV__nc|ENSG00000123338|P55160-2|NCKAP1L REV__nc|ENSG00000123338|P55160-2|NCKAP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2677001953125 2 546.268758 1090.52296 NaN NaN NaN NaN NaN NaN NaN 90.472 1 90.472 89.972 90.972 0 0 0 0 0.7818 1 50053 50053 6.7232 0 1 + 72970 19381 48801 49857 84895 84895 -0.01867671576974317 VSDLVKDLIF 10 Unmodified _VSDLVKDLIF_ 0 0 0 nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 nc|ENSG00000064419|Q9Y5L0-5|TNPO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.5577392578125 3 383.556902 1147.64888 1.7312 0.00066402 0.61012 0.00023402 2.3413 0.00089804 383.5570698614735 95.897 0.1575 89.722 89.644 89.801 -6.1757 14 8 2 0 0 0 0.52097 1 63516 63516 9.7643 0.22028 1 11159000 72971 874 48802 49858 84896 84896 0.08095738480074033 VSDPFAPI 8 Unmodified _VSDPFAPI_ 0 0 0 REV__ENSG00000134070|ENST00000256458|IRAK2 REV__ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 845.4409790039062 1 845.440346 844.433069 0.1028 8.691E-05 0.53577 0.00045296 0.63857 0.00053987 845.4407432851104 85.462 0.68596 79.287 79.008 79.694 -6.1757 90 41 3 0 0 0 0.2655 1 56274 56274 59.795 0 1 131740000 + 72972 19950 48803 49859 84897 84897 0.004630220860917689 VSDQHGVVY 9 Unmodified _VSDQHGVVY_ 0 0 0 ENSG00000128052|ENST00000263923|KDR;nc|ENSG00000128052|P35968-2|KDR;nc|ENSG00000128052|P35968-3|KDR ENSG00000128052|ENST00000263923|KDR ENSG00000128052|ENST00000263923|KDR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7535705566406 2 502.245806 1002.47706 0.27507 0.00013815 -0.3056 -0.00015349 -0.030533 -1.5335E-05 502.24551371165774 43.42 0.26409 43.42 43.262 43.526 0 22 12 2 0 0 0 0.20528 1 23490 23490 8.5933 2.8329 1 9317900 72973 4046 48804 49860 84898 84898 -0.024079934875658182 VSDSGHTT 8 Unmodified _VSDSGHTT_ 0 0 0 REV__ENST00000444069.5_1_3:48336129-48342785:-|nuORF REV__ENST00000444069.5_1_3:48336129-48342785:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8585510253906 2 402.180132 802.345711 NaN NaN NaN NaN NaN NaN NaN 14.842 1 14.811 14.311 15.311 -0.030868 0 0 0 0.97444 1 7248 7248 0.69038 0 1 + 72974 22626 48805 49861 84899 84899 -0.06336803855481321 VSDTTWSWKAW 11 Unmodified _VSDTTWSWKAW_ 0 0 0 REV__ENST00000321892.8_1_17:65978893-65979136:+|nuORF REV__ENST00000321892.8_1_17:65978893-65979136:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.2193298339844 3 456.21906 1365.63535 0.5805 0.00026484 0.45717 0.00020857 1.0377 0.00047341 456.21929862834736 73.482 0.20487 73.006 72.913 73.118 -0.47588 14 8 2 0 0 0 0.73115 1 40237 40237 0.45452 0 1 745740 + 72975 25520 48806 49862 84900 84900 -0.03284119299132726 VSDVFVHGSCE 11 Unmodified _VSDVFVHGSCE_ 0 0 0 REV__ENST00000520983.5_1_8:28651295-28747426:-|nuORF REV__ENST00000520983.5_1_8:28651295-28747426:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.7598876953125 2 589.760963 1177.50737 -0.076892 -4.5348E-05 -4.0047 -0.0023618 -4.0816 -0.0024071 589.7593361021516 44.65 0.19775 44.627 44.56 44.758 -0.022064 14 10 2 0 0 0 0.28407 1 23980 23980 27.629 10.516 1 7529100 + 72976 18347 48807 49863 84901 84901 -0.07428002884671514 VSEERFYTKW 10 Unmodified _VSEERFYTKW_ 0 0 0 nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL;ENSG00000162688|ENST00000361915|AGL nc|ENSG00000162688|P35573-2|AGL nc|ENSG00000162688|P35573-2|AGL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.8900146484375 3 448.890944 1343.651 NaN NaN NaN NaN NaN NaN NaN 15.112 1 15.098 14.598 15.598 -0.014067 0 0 0 1.0024 1 7398 7398 0.13989 0 1 72977 6893 48808 49864 84902 84902 -0.007078327821091079 VSEINSFLSDV 11 Unmodified _VSEINSFLSDV_ 0 0 0 REV__ENSG00000236699|ENST00000420470|ARHGEF38 REV__ENSG00000236699|ENST00000420470|ARHGEF38 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.303466796875 2 605.303518 1208.59248 NaN NaN NaN NaN NaN NaN NaN 30.96 1 30.96 30.46 31.46 0 0 0 0 0.93969 1 16106 16106 2.7352 0 1 + 72978 24426 48809 49865 84903 84903 -0.0034693414722823945 VSEIWEYSFYY 11 Unmodified _VSEIWEYSFYY_ 0 0 0 ENST00000262225.7_1_12:124081454-124081643:+|nuORF ENST00000262225.7_1_12:124081454-124081643:+|nuORF ENST00000262225.7_1_12:124081454-124081643:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 743.3329467773438 2 743.332276 1484.65 0.15909 0.00011825 -0.52098 -0.00038726 -0.3619 -0.00026901 743.3323145281215 52.801 0.48119 52.349 52.261 52.742 -0.45173 38 24 2 0 0 0 0.68427 1 28549 28549 5.7319 0.83484 1 3058800 72979 11263 48810 49866 84904 84904 -0.07294091941662373 VSEKETIV 8 Unmodified _VSEKETIV_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 904.4988403320312 1 904.498589 903.491313 0.052204 4.7218E-05 0.416 0.00037627 0.4682 0.00042349 904.4989784193422 72.105 0.30298 71.629 71.469 71.772 -0.47609 18 12 2 0 0 0 0.80722 1 39534 39534 2.3027 0 1 1783100 72980 1358 48811 49867 84905 84905 0.03570658940736848 VSEKSLPK 8 Unmodified _VSEKSLPK_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.2641296386719 2 444.263468 886.512382 0.32192 0.00014302 0.7815 0.00034719 1.1034 0.00049021 444.2637371613635 103.29 0.06369 103.29 103.26 103.32 0 4 2 2 0 0 0 0.81007 1 56954 56954 0.6015 0 1 154930 72981 555 48812 49868 84906 84906 0.06458669040250697 VSEKSLPK 8 Unmodified _VSEKSLPK_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20 ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.2650451660156 2 444.263468 886.512382 1.7117 0.00076043 0.90971 0.00040415 2.6214 0.0011646 444.2638599407491 106.51 0.26067 100.33 100.29 100.55 -6.1757 79 51 2 0 0 0 0.81007 1 71292 71292 0.6015 0 1 2255300 72982 555 48812 49868 84907 84907 0.06458669040250697 VSELGPIVQF 10 Unmodified _VSELGPIVQF_ 0 0 0 nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2 nc|ENSG00000128654|O75431-2|MTX2 nc|ENSG00000128654|O75431-2|MTX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.28759765625 2 544.802957 1087.59136 0.089439 4.8727E-05 1.9246 0.0010485 2.0141 0.0010973 544.8036843064863 59.457 0.31622 58.966 58.835 59.151 -0.49079 17 14 2 0 0 0 0.23057 1 32348 32348 13.042 1.4022 1 1065700 72983 4082 48813 49869 84908 84908 0.05106896274514838 VSENFWMVWSE 11 Unmodified _VSENFWMVWSE_ 0 0 0 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.3114013671875 2 707.31082 1412.60709 0.061864 4.3757E-05 0.87174 0.00061659 0.93361 0.00066035 707.3114155760333 47.203 0.20721 47.203 47.062 47.269 0 15 9 2 0 0 0 0.65846 1 25853 25853 8.1555 0 1 2716300 72984 10290 48814 49870 84909 84909 -0.08271185270746173 VSENFWMVWSE 11 Unmodified _VSENFWMVWSE_ 0 0 0 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.31201171875 2 707.31082 1412.60709 0.15938 0.00011273 2.3757 0.0016804 2.5351 0.0017931 707.8138937538416 53.267 0.29977 53.203 53.061 53.361 -0.063423 30 14 3 0 0 0 0.65846 1 28868 28868 8.1555 1.0538 1 4704000 72985 10290 48814 49870 84910 84910 -0.08271185270746173 VSENFWMVWSE 11 Unmodified _VSENFWMVWSE_ 0 0 0 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 707.31082 1412.60709 0.24116 0.00017057 1.6469 0.0011649 1.888 0.0013354 707.8135209305694 53.316 0.21357 53.316 53.166 53.38 0 0.056395 -0.00062968 NaN 8.1555 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1081500 72986 10290 48814 49870 -0.08271185270746173 VSENFWMVWSE 11 Unmodified _VSENFWMVWSE_ 0 0 0 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 ENSG00000204478|ENST00000602960|PRAMEF20 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 707.31082 1412.60709 0.51913 0.00036719 -1.0531 -0.00074487 -0.53396 -0.00037768 707.3105016174018 47.595 0.12208 47.242 47.165 47.287 -0.3526 0.019746 -0.0020654 NaN 8.1555 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3280400 72987 10290 48814 49870 -0.08271185270746173 VSEPRYFQL 9 Unmodified _VSEPRYFQL_ 0 0 0 ENST00000478389.5_1_20:57566845-57568278:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000478389.5_1_20:57566845-57568278:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3002319335938 2 569.798206 1137.58186 0.57343 0.00032674 -0.67156 -0.00038265 -0.098123 -5.591E-05 569.7979579624994 57.652 0.22138 57.163 57.066 57.288 -0.48974 15 10 2 0 0 0 0.047194 1 31340 31340 57.722 24.936 1 2664100 72988 1921;14017 48815 49871 84911 84911 0.018571279890011283 VSEPRYFQL 9 Unmodified _VSEPRYFQL_ 0 0 0 ENST00000478389.5_1_20:57566845-57568278:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD;ENST00000474543.5_1_20:57564608-57568882:+|nuORF ENST00000478389.5_1_20:57566845-57568278:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD ENSG00000101158|ENST00000652272|NELFCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7987060546875 2 569.798206 1137.58186 2.3214 0.0013227 -0.65965 -0.00037587 1.6617 0.00094685 569.7980228709715 62.76 0.29533 56.584 56.442 56.737 -6.1757 28 14 2 0 0 0 0.016448 1 40503 40503 82.529 26.352 1 14782000 72989 1921;14017 48815 49871 84912 84912 0.018571279890011283 VSERKKSL 8 Unmodified _VSERKKSL_ 0 0 0 REV__nc|ENSG00000144580|Q92600-3|CNOT9 REV__nc|ENSG00000144580|Q92600-3|CNOT9 MSMS AL20221201_MKP_PDAC_01 4 473.7682495117188 2 473.787641 945.56073 NaN NaN NaN NaN NaN NaN NaN 91.22 1 85.044 84.544 85.544 -6.1757 0 0 0 0.88073 1 60296 60296 19.439 1.304 1 + 72990 20717 48816 49872 84913 84913 0.08577162680148831 VSESATSKKI 10 Unmodified _VSESATSKKI_ 0 0 0 ENST00000594962.5_1_19:17608063-17615347:+|nuORF;nc|ENSG00000130304|Q6PCB7-2|SLC27A1;ENSG00000130304|ENST00000252595|SLC27A1 ENST00000594962.5_1_19:17608063-17615347:+|nuORF ENST00000594962.5_1_19:17608063-17615347:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 350.5332336425781 3 350.532756 1048.57644 NaN NaN NaN NaN NaN NaN NaN 24.878 1 21.994 21.494 22.494 -2.8831 0 0 0 0.8671 1 13572 13572 5.4027 0 1 72991 4200 48817 49873 84914 84914 0.05409404406532303 VSESSDVLPK 10 Unmodified _VSESSDVLPK_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000425226.1_1_2:203705056-203705395:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7802124023438 2 530.779679 1059.5448 -0.47871 -0.00025409 0.81978 0.00043512 0.34107 0.00018103 530.7800369773688 28.131 0.19674 28.131 28.074 28.271 0 17 9 2 0 0 0 0.16005 1 14533 14533 38.615 13.941 1 1401300 + 72992 165 48818 49874 84915 84915 0.01741411652574243 VSFAITTH 8 Unmodified _VSFAITTH_ 0 0 0 REV__ENSG00000204311|ENST00000644580|PJVK REV__ENSG00000204311|ENST00000644580|PJVK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 875.4658813476562 1 875.462144 874.454868 0.099443 8.7059E-05 4.3182 0.0037804 4.4177 0.0038675 875.4661559079519 64.259 0.15152 64.259 64.214 64.365 0 9 6 2 0 0 0 0.6895 1 35840 35840 18.135 0 1 410570 + 72993 24159 48819 49875 84916 84916 0.012618268346614059 VSFASRPCTY 10 Unmodified _VSFASRPCTY_ 0 0 0 REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1 REV__nc|ENSG00000112763|Q7KYR7-3|BTN2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7678833007812 2 565.768591 1129.52263 0.62052 0.00035107 -0.15922 -9.0082E-05 0.4613 0.00026099 566.2706397066249 49.199 0.52306 49.156 48.772 49.295 -0.04369 40 25 2 0 0 0 0.40136 1 26568 26568 21.537 1.0834 1 1821700 + 72994 18835 48820 49876 84917 84917 -0.03695091296845021 VSFDGFRWD 9 Unmodified _VSFDGFRWD_ 0 0 0 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.2490844726562 2 564.759081 1127.50361 1.1796 0.00066616 1.6617 0.00093847 2.8413 0.0016046 564.7598289990707 90.949 0.29655 84.774 84.659 84.956 -6.1757 31 17 2 0 0 0 0.18118 1 60225 60225 13.906 1.6654 1 9973600 72995 2923 48821 49877 84918 84918 -0.055043045962293036 VSFDRFTF 8 Unmodified _VSFDRFTF_ 0 0 0 REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF REV__ENST00000453015.1_1_1:44169233-44170247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7506713867188 2 509.753267 1017.49198 0.37358 0.00019043 -2.2787 -0.0011616 -1.9052 -0.00097116 509.752153422695 68.086 0.56859 67.604 67.255 67.823 -0.48218 43 26 2 0 0 0 0.67481 2 37174 37174;37285 19.439 0 1 6176400 + 72996 27226 48822 49878 84919;84920 84919 -0.016065016195625503 VSFGENELF 9 Unmodified _VSFGENELF_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1042.218505859375 1 1041.48875 1040.48148 0.086506 9.0095E-05 -1.7221 -0.0017936 -1.6356 -0.0017035 1041.487083044703 51.862 0.22712 51.428 51.285 51.512 -0.43367 19 11 2 0 0 0 0.36964 1 27935 27935 13.906 6.6168 1 2447000 72997 3742 48823 49879 84921 84921 -0.03714529064677663 VSFHLWIRRNR 11 Unmodified _VSFHLWIRRNR_ 0 0 0 ENST00000474593.1_1_6:73985278-74020035:-|nuORF;nc|ENSG00000135314|Q4VXA5|KHDC1 ENST00000474593.1_1_6:73985278-74020035:-|nuORF ENST00000474593.1_1_6:73985278-74020035:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 742.8302612304688 2 742.423294 1482.83203 0.14018 0.00010407 1.5285 0.0011348 1.6687 0.0012389 742.9260031315666 42.033 0.11888 42.025 41.961 42.08 -0.0088196 7 5 2 0 0 0 0.30572 1 22510 22510 0.30703 0 1 6626300 72998 13941 48824 49880 84922 84922 0.10993150105105087 VSFLHPLFL 9 Unmodified _VSFLHPLFL_ 0 0 0 REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2738647460938 2 536.813128 1071.6117 0.34161 0.00018338 -2.316 -0.0012433 -1.9744 -0.0010599 537.3130140079874 63.779 0.12761 63.293 63.213 63.34 -0.48574 8 5 2 0 0 0 0.20728 1 34755 34755 13.508 4.1604 1 990590 + 72999 26007 48825 49881 84923 84923 0.07876111724976909 VSFLHPLFL 9 Unmodified _VSFLHPLFL_ 0 0 0 REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF REV__ENST00000368346.7_1_1:155306966-155307122:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 536.813128 1071.6117 0.56124 0.00030128 -3.3409 -0.0017935 -2.7797 -0.0014922 536.811515362505 63.426 0.20156 63.404 63.278 63.479 -0.021614 0.055299 -0.00028386 NaN 13.508 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2799900 + 73000 26007 48825 49881 0.07876111724976909 VSFPFPAL 8 Unmodified _VSFPFPAL_ 0 0 0 ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2445068359375 2 439.244547 876.47454 0.55153 0.00024226 -0.82902 -0.00036414 -0.27749 -0.00012189 439.2441001557277 36.405 0.3697 32.212 32.018 32.388 -4.1928 32 22 2 0 0 0 0.50586 1 21332 21332 34.187 0 1 23418000 73001 11013 48826 49882 84924 84924 0.03136202845416847 VSFPFPAL 8 Unmodified _VSFPFPAL_ 0 0 0 ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF ENST00000216733.7_1_14:23826097-23826370:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 439.244547 876.47454 -0.56769 -0.00024935 -0.65044 -0.0002857 -1.2181 -0.00053506 439.24428111907145 32.053 0.18598 32.053 31.94 32.126 0 -0.079253 0.00012783 NaN 34.187 15 8 3 NaN NaN NaN NaN 0 NaN NaN 0 731390 73002 11013 48826 49882 0.03136202845416847 VSFPHSVSQ 9 Unmodified _VSFPHSVSQ_ 0 0 0 nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1 nc|ENSG00000100987|Q9NZR4-2|VSX1 nc|ENSG00000100987|Q9NZR4-2|VSX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.248779296875 2 494.248349 986.482145 -0.029479 -1.457E-05 0.37217 0.00018394 0.34269 0.00016937 494.2485113908301 31.664 0.19371 31.695 31.606 31.8 0.030104 15 8 2 0 0 0 0.14602 1 16599 16599 28.487 6.7402 1 1630000 73003 16087 48827 49883 84925 84925 -0.011636896249569872 VSFPSNRQDLQ 11 Unmodified _VSFPSNRQDLQ_ 0 0 0 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|97 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|97 chr2:113477199-113482177|50|11.1|0.21|5.7|+|1|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|97 MSMS AL20221201_MKP_PDAC_01 4 430.88818359375 3 430.886081 1289.63641 NaN NaN NaN NaN NaN NaN NaN 105.78 1 99.609 99.109 100.11 -6.1757 0 0 0 0.94165 1 70855 70855 0.45452 0.046251 1 73004 102 48828 49884 84926 84926 0.0031809506976969715 VSFWQWAH 8 Unmodified _VSFWQWAH_ 0 0 0 ENSG00000167346|ENST00000380390|MMP26 ENSG00000167346|ENST00000380390|MMP26 ENSG00000167346|ENST00000380390|MMP26 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.276123046875 2 530.753601 1059.49265 NaN NaN NaN NaN NaN NaN NaN 89.803 1 89.301 88.801 89.801 -0.50171 0 0 0 0.97444 1 49094 49094 0.79363 0 1 73005 7602 48829 49885 84927 84927 -0.034716621798907 VSFYRDHF 8 Unmodified _VSFYRDHF_ 0 0 0 ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5072326660156 3 357.506653 1069.49813 -0.24254 -8.671E-05 1.0803 0.00038621 0.83774 0.0002995 357.50714762861924 37.294 0.2035 37.315 37.195 37.398 0.021545 18 8 3 0 0 0 0.80232 1 19788 19788 3.5965 0.60125 1 2314200 73006 15727 48830 49886 84928 84928 -0.03383983388039269 VSFYRDHF 8 Unmodified _VSFYRDHF_ 0 0 0 ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 357.506653 1069.49813 -0.099032 -3.5405E-05 0.92646 0.00033122 0.82743 0.00029581 357.5067066063845 37.634 0.16162 37.363 37.279 37.44 -0.27133 0.023734 -0.0001485 NaN 3.5965 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1685000 73007 15727 48830 49886 -0.03383983388039269 VSFYRDHF 8 Unmodified _VSFYRDHF_ 0 0 0 ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF ENST00000592995.1_1_17:58539164-58539350:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 357.506653 1069.49813 -0.24254 -8.671E-05 1.0803 0.00038621 0.83774 0.0002995 357.50714762861924 37.294 0.2035 37.315 37.195 37.398 0.021545 -0.023734 1.6467E-05 NaN 3.5965 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2314200 73008 15727 48830 49886 -0.03383983388039269 VSGEFRFRHGY 11 Unmodified _VSGEFRFRHGY_ 0 0 0 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 ENSG00000124784|ENST00000379834|RIOK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.2257385253906 3 452.226549 1353.65782 0.49327 0.00022307 -1.7304 -0.00078252 -1.2371 -0.00055945 452.22565079011827 20.195 0.16709 20.205 20.09 20.257 0.010551 21 8 3 0 0 0 0.69316 1 10270 10270 2.2527 0 1 1402900 73009 3817 48831 49887 84929 84929 -0.004864751108698329 VSGEMYYVMP 10 Unmodified _VSGEMYYVMP_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3272094726562 2 588.25921 1174.50387 0.92942 0.00054674 1.471 0.00086534 2.4004 0.0014121 588.2606266784431 57.876 0.22035 57.81 57.614 57.834 -0.066036 15 10 2 0 0 0 0.23325 1 31470 31470 10.074 0 1 1091700 + 73010 29556 48832 49888 84930 84930 -0.07640388982918012 VSGFLCAF 8 Unmodified _VSGFLCAF_ 0 0 0 ENSG00000170832|ENST00000300896|USP32;ENST00000602493.5_1_17:60360056-60363323:-|nuORF;nc|ENSG00000129204|P35125-2|USP6;ENST00000575709.5_1_17:5042349-5076270:+|nuORF;ENSG00000129204|ENST00000574788|USP6 ENSG00000170832|ENST00000300896|USP32 ENSG00000170832|ENST00000300896|USP32 MSMS AL20221201_MKP_PDAC_01 4 422.2076110839844 2 422.207107 842.399661 NaN NaN NaN NaN NaN NaN NaN 57.957 1 51.93 51.43 52.43 -6.0275 0 0 0 0.93066 1 37106 37106 14.582 4.3983 1 73011 8028 48833 49889 84931 84931 -0.027843029574682987 VSGGGRAP 8 Unmodified _VSGGGRAP_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.6906127929688 2 350.69047 699.366387 0.32457 0.00011382 -0.77375 -0.00027135 -0.44917 -0.00015752 350.6902768420209 71.969 0.24252 72.008 71.85 72.092 0.039032 15 11 2 0 0 0 0.80992 1 39607 39607 0.69038 0 1 1769400 + 73012 29556 48834 49890 84932 84932 0.0046783131484744445 VSGGGRAP 8 Unmodified _VSGGGRAP_ 0 0 0 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 REV__nc|ENSG00000107147|Q5JUK3|KCNT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1893310546875 2 350.69047 699.366387 0.32457 0.00011382 -0.77375 -0.00027135 -0.44917 -0.00015752 350.6902768420209 71.969 0.24252 72.008 71.85 72.092 0.039032 15 11 2 0 0 0 8.7369 1 39626 39626 0.69038 0 1 1769400 + 73013 29556 48834 49890 84933 84933 0.0046783131484744445 VSGLLLSLQ 9 Unmodified _VSGLLLSLQ_ 0 0 0 ENST00000550043.1_1_14:28734339-28734417:+|nuORF ENST00000550043.1_1_14:28734339-28734417:+|nuORF ENST00000550043.1_1_14:28734339-28734417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2869567871094 2 465.286943 928.559333 0.6228 0.00028978 0.5183 0.00024116 1.1411 0.00053094 465.287118154826 74.748 0.43467 74.272 74.02 74.454 -0.47588 53 17 4 0 0 0 0.070838 1 40826 40826 39.957 3.8303 1 13982000 73014 15161 48835 49891 84934 84934 0.09219528591370363 VSGLLLSLQ 9 Unmodified _VSGLLLSLQ_ 0 0 0 ENST00000550043.1_1_14:28734339-28734417:+|nuORF ENST00000550043.1_1_14:28734339-28734417:+|nuORF ENST00000550043.1_1_14:28734339-28734417:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 465.2870178222656 2 465.286943 928.559333 0.31889 0.00014837 0.69588 0.00032378 1.0148 0.00047216 465.287213450926 74.194 0.40564 74.238 74.028 74.433 0.043976 47 17 4 0 0 0 0.022193 1 40949 40949 61.357 9.0891 1 14936000 73015 15161 48835 49891 84935 84935 0.09219528591370363 VSGLWLVAL 9 Unmodified _VSGLWLVAL_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.29248046875 2 479.292028 956.569503 1.0619 0.00050897 0.24707 0.00011842 1.309 0.00062738 479.292005719 100.56 0.10832 100.52 100.45 100.56 -0.04216 8 3 3 0 0 0 0.49272 1 55883 55883 7.9102 0 1 12282000 + 73016 22116 48836 49892 84936 84936 0.08948136316621458 VSGNQFLH 8 Unmodified _VSGNQFLH_ 0 0 0 REV__ENSG00000169679|ENST00000302759|BUB1 REV__ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2305603027344 2 451.229959 900.445365 1.1115 0.00050155 0.74513 0.00033623 1.8567 0.00083778 451.2301600550986 58.344 0.51701 58.284 57.935 58.452 -0.060722 64 25 4 0 0 0 0.80975 1 31644 31644 0.79363 0 1 21496000 + 73017 22414 48837 49893 84937 84937 -0.008839414508543086 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 841.4195556640625 1 841.420279 840.413003 1.2533 0.0010546 -1.4952 -0.0012581 -0.24189 -0.00020353 841.4190220482152 47.073 0.34407 47.04 46.919 47.263 -0.033421 31 17 2 0 0 0 0.67481 2 25319 25319;25426 19.439 1.304 1 24899000 + 73018 25018 48838 49894 84938;84939 84938 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 841.4203491210938 1 841.420279 840.413003 0.45287 0.00038106 -0.12186 -0.00010254 0.33101 0.00027852 841.4199996495995 48.92 0.21327 48.876 48.791 49.004 -0.04369 18 10 2 0 0 0 0.74163 1 26395 26395 13.508 0.97634 1 3581500 + 73019 25018 48838 49894 84940 84940 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 841.4208374023438 1 841.420279 840.413003 -0.10356 -8.7137E-05 -0.28333 -0.0002384 -0.38689 -0.00032554 841.4196898124757 53.643 0.38575 53.58 53.481 53.866 -0.063423 60 25 3 0 0 0 0.67481 1 29089 29089 19.439 1.304 1 29393000 + 73020 25018 48838 49894 84941 84941 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4216918945312 1 841.420279 840.413003 0.54161 0.00045572 0.32236 0.00027124 0.86398 0.00072697 841.4202442663975 53.262 0.342 47.458 47.334 47.676 -5.8042 32 21 2 0 0 0 0.67481 1 33609 33609 19.439 1.304 1 22807000 + 73021 25018 48838 49894 84942 84942 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.4209594726562 1 841.420279 840.413003 0.87092 0.00073281 -0.47294 -0.00039794 0.39798 0.00033487 841.4198826053466 59.766 0.72342 53.651 53.452 54.175 -6.1147 92 39 3 0 0 0 0.67481 1 38309 38309 19.439 19.439 1 92923000 + 73022 25018 48838 49894 84943 84943 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 841.422119140625 1 841.420279 840.413003 0.95952 0.00080736 0.54198 0.00045603 1.5015 0.0012634 841.4208001307863 63.546 0.93544 57.37 57 57.935 -6.1757 94 52 2 0 0 0 0.67481 2 41016 41016;41161 19.439 1.304 1 17875000 + 73023 25018 48838 49894 84944;84945 84944 -0.013587288538587927 VSGPPAWQ 8 Unmodified _VSGPPAWQ_ 0 0 0 REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF REV__ENST00000262366.7_1_16:4388647-4388779:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 841.420279 840.413003 0.45287 0.00038106 -0.12186 -0.00010254 0.33101 0.00027852 841.4199996495995 48.92 0.21327 48.876 48.791 49.004 -0.04369 0 0 NaN 13.508 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3581500 + 73024 25018 48838 49894 -0.013587288538587927 VSGRAALRL 9 Unmodified _VSGRAALRL_ 0 0 0 nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 nc|ENSG00000072110|P12814-4|ACTN1 MSMS AL20221201_MKP_PDAC_01 4 471.7969665527344 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 10.07 1 7.5876 7.0876 8.0876 -2.482 0 0 0 0.8622 1 5074 5074 0 0 1 73025 16049 48839 49895 84946 84946 0.10392288636876401 VSGSLALAI 9 Unmodified _VSGSLALAI_ 0 0 0 nc|ENSG00000130714|Q9Y6A1-4|POMT1;nc|ENSG00000130714|Q9Y6A1-3|POMT1;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1;ENST00000494883.1_1_9:134396759-134397813:+|nuORF nc|ENSG00000130714|Q9Y6A1-4|POMT1 nc|ENSG00000130714|Q9Y6A1-4|POMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4949951171875 1 830.498195 829.490919 -0.30214 -0.00025093 -0.89125 -0.00074018 -1.1934 -0.00099111 830.4974800564539 70.748 0.29597 70.748 70.565 70.861 0 43 33 2 0 0 0 0.14602 1 39374 39374 28.487 0 1 1651900 73026 4244 48840 49896 84947 84947 0.06935284011501608 VSGSYLTALTR 11 Unmodified _VSGSYLTALTR_ 0 0 0 ENST00000370406.7_1_X:149106490-149106673:-|nuORF ENST00000370406.7_1_X:149106490-149106673:-|nuORF ENST00000370406.7_1_X:149106490-149106673:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1167.795654296875 1 1167.63681 1166.62954 0.60595 0.00070753 -0.030249 -3.532E-05 0.5757 0.00067221 1167.636166732869 39.063 0.063831 39.074 39.042 39.106 0.011452 4 2 2 0 0 0 0.7453 1 20807 20807 0 0 1 913380 73027 12331 48841 49897 84948 84948 0.05288782189154517 VSGVRQEEY 9 Unmodified _VSGVRQEEY_ 0 0 0 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.76171875 2 533.76182 1065.50909 -0.22973 -0.00012262 1.5519 0.00082833 1.3221 0.00070571 533.7626964165478 22.002 0.29031 22.025 21.851 22.142 0.022896 23 12 3 0 0 0 0.43463 1 11170 11170 10.824 3.5347 1 650370 + 73028 23769 48842 49898 84949 84949 -0.021046258044179922 VSGVRQEEY 9 Unmodified _VSGVRQEEY_ 0 0 0 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 REV__nc|ENSG00000189184|Q9HCL0-2|PCDH18 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 533.76182 1065.50909 -0.22973 -0.00012262 1.5519 0.00082833 1.3221 0.00070571 533.7626964165478 22.002 0.29031 22.025 21.851 22.142 0.022896 -0.026472 0.00015932 NaN 10.824 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 650370 + 73029 23769 48842 49898 -0.021046258044179922 VSHTSSAVVL 10 Unmodified _VSHTSSAVVL_ 0 0 0 ENST00000561677.6_1_16:69782679-69783527:-|nuORF ENST00000561677.6_1_16:69782679-69783527:-|nuORF ENST00000561677.6_1_16:69782679-69783527:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2769775390625 2 500.277106 998.53966 0.53266 0.00026648 -1.1492 -0.0005749 -0.61651 -0.00030842 500.27664290909263 39.186 0.32909 39.186 39.012 39.341 0 36 15 3 0 0 0 0.31022 1 20949 20949 26.884 1.4843 1 7350300 73030 15330 48843 49899 84950 84950 0.04033152580609567 VSHYAVGDEW 10 Unmodified _VSHYAVGDEW_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;ENST00000480024.1_1_2:216232580-216235161:-|nuORF ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7626953125 2 581.76182 1161.50909 0.90743 0.00052791 -0.12702 -7.3896E-05 0.78041 0.00045401 581.761776040672 40.343 0.18964 40.348 40.234 40.424 0.0050545 14 8 2 0 0 0 0.52888 1 21521 21521 14.838 0 1 2474700 73031 3120 48844 49900 84951 84951 -0.06520625804432711 VSIEDLLFL 9 Unmodified _VSIEDLLFL_ 0 0 0 ENST00000485676.5_1_X:106359410-106359983:-|nuORF ENST00000485676.5_1_X:106359410-106359983:-|nuORF ENST00000485676.5_1_X:106359410-106359983:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.299560546875 2 524.799883 1047.58521 1.2145 0.00063735 -2.1598 -0.0011334 -0.94529 -0.00049609 524.8000812839178 86.257 0.74213 80.081 79.596 80.338 -6.1757 96 40 3 0 0 0 0.30562 1 56726 56726 16.942 0 1 40172000 73032 14169 48845 49901 84952 84952 0.06332378042998243 VSIKFCYSNC 10 Unmodified _VSIKFCYSNC_ 0 0 0 REV__ENSG00000174145|ENST00000309447|NWD2 REV__ENSG00000174145|ENST00000309447|NWD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.7691040039062 2 582.264827 1162.5151 0.58196 0.00033886 1.7128 0.00099728 2.2947 0.0013361 582.767815001675 41.18 0.96858 41.179 40.626 41.594 -0.0017929 125 46 4 0 0 0 0.48505 1 21965 21965 17.113 0.1706 1 18539000 + 73033 22770 48846 49902 84953 84953 -0.05965566888767171 VSILIAIP 8 Unmodified _VSILIAIP_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1;ENSG00000101292|ENST00000678254|PROKR2 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.2739868164062 2 413.275847 824.537141 NaN NaN NaN NaN NaN NaN NaN 61.233 1 61.233 60.733 61.733 0 0 0 0 0.97444 1 34143 34143 0.69038 0 1 73034 7892 48847 49903 84954 84954 0.11785348913599591 VSILLKLLI 9 Unmodified _VSILLKLLI_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|182|2|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|182|2|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 1012.053649902344 1 1011.71763 1010.71035 0.34236 0.00034637 -0.79927 -0.00080863 -0.45691 -0.00046226 1012.7192517717314 51.746 0.099258 46.011 45.936 46.035 -5.7345 7 5 2 0 0 0 0.61381 1 32593 32593 0.52476 0 1 21464000 + 73035 29440 48848 49904 84955 84955 0.20542714970031284 VSIVEPKDEIL 11 Unmodified _VSIVEPKDEIL_ 0 0 0 ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3;ENST00000433853.1_1_3:183867695-183868220:+|nuORF ENSG00000149273|ENST00000531188|RPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.5718994140625 3 414.571099 1240.69147 0.45897 0.00019028 1.6695 0.00069214 2.1285 0.00088241 414.57175113152346 39.921 0.29647 35.391 35.216 35.512 -4.5294 32 21 2 0 0 0 0.15928 1 23738 23738 24.229 0 1 28004000 73036 5998;13297 48849 49905 84956 84956 0.08075088817668075 VSIWMCPV 8 Unmodified _VSIWMCPV_ 0 0 0 ENST00000409300.5_1_12:110943432-110943528:+|nuORF ENST00000409300.5_1_12:110943432-110943528:+|nuORF ENST00000409300.5_1_12:110943432-110943528:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4520874023438 1 934.452507 933.445231 0.27421 0.00025624 -1.1708 -0.001094 -0.89655 -0.00083778 934.4513537202857 72.198 0.28813 72.198 72.074 72.362 0 22 12 2 0 0 0 0.80676 1 40274 40274 2.5775 0.27475 1 1354000 73037 12959 48850 49906 84957 84957 -0.024154007667334554 VSKDHGKV 8 Unmodified _VSKDHGKV_ 0 0 0 nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D nc|ENSG00000048707|Q5THJ4-2|VPS13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 434.7806396484375 2 435.245609 868.476666 0.76155 0.00033146 0.27893 0.0001214 1.0405 0.00045286 435.24539434416914 31.825 0.26324 28.129 27.983 28.246 -3.6958 22 14 2 0 0 0 8.7369 1 18019 18019 27.629 2.2295 1 14398000 73038 702 48851 49907 84958 84958 0.03716631583245089 VSKKKKKKK 9 Unmodified _VSKKKKKKK_ 0 0 0 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MSMS AL20221201_MKP_PDAC_01 4 551.3948364257812 2 551.395151 1100.77575 NaN NaN NaN NaN NaN NaN NaN 105.67 1 99.491 98.991 99.991 -6.1757 0 0 0 0.8622 1 70785 70785 0 0 1 73039 16375 48852 49908 84959 84959 0.22939129215728826 VSKKKKKKK 9 Unmodified _VSKKKKKKK_ 0 0 0 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 nc|ENSG00000170085|Q8NDZ2-2|SIMC1 MSMS AL20221201_MKP_PDAC_01 4 551.3594360351562 2 551.395151 1100.77575 NaN NaN NaN NaN NaN NaN NaN 105.99 1 99.817 99.317 100.32 -6.1757 0 0 0 0.8622 1 70976 70976 0 0 1 73040 16375 48852 49908 84960 84960 0.22939129215728826 VSKKLAPI 8 Unmodified _VSKKLAPI_ 0 0 0 nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44 nc|ENSG00000006740|Q17R89-2|ARHGAP44 nc|ENSG00000006740|Q17R89-2|ARHGAP44 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2857055664062 2 428.286746 854.558939 NaN NaN NaN NaN NaN NaN NaN 85.442 1 85.442 84.942 85.942 0 0 0 0 0.97444 1 47350 47350 0 0 1 73041 348 48853 49909 84961 84961 0.1258415366215786 VSKQAPPIQVR 11 Unmodified _VSKQAPPIQVR_ 0 0 0 REV__ENSG00000143850|ENST00000272203|PLEKHA6 REV__ENSG00000143850|ENST00000272203|PLEKHA6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2468566894531 3 408.247062 1221.71936 NaN NaN NaN NaN NaN NaN NaN 10.326 1 10.343 9.8432 10.843 0.017581 0 0 0 0.9435 1 5109 5109 0 0 1 + 73042 20675 48854 49910 84962 84962 0.11736456588391775 VSKQNFQQ 8 Unmodified _VSKQNFQQ_ 0 0 0 REV__ENSG00000125676|ENST00000245838|THOC2 REV__ENSG00000125676|ENST00000245838|THOC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2249450683594 2 489.753798 977.493044 0.89593 0.00043879 2.6123 0.0012794 3.5083 0.0017182 489.75564335010944 49.381 0.26066 49.337 49.195 49.456 -0.04369 19 12 2 0 0 0 8.7369 1 26736 26736 18.135 4.6271 1 1246700 + 73043 19508 48855 49911 84963 84963 0.0033971274932582674 VSKRRGSQEK 10 Unmodified _VSKRRGSQEK_ 0 0 0 nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;nc|ENSG00000029363|Q9NYF8-4|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 nc|ENSG00000029363|Q9NYF8-3|BCLAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.2279968261719 3 392.226549 1173.65782 0.78366 0.00030737 0.33069 0.00012971 1.1143 0.00043708 392.22676213108235 26.982 0.60974 23.946 23.609 24.219 -3.0365 101 31 4 0 0 0 0.65282 1 15024 15024 4.7159 0.87001 1 240390000 73044 577 48856 49912 84964 84964 0.07793524889120818 VSKRRLLA 8 Unmodified _VSKRRLLA_ 0 0 0 REV__ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000176624|ENST00000406189|MEX3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.0414733886719 2 471.813993 941.613434 -0.69976 -0.00033016 0.058362 2.7536E-05 -0.6414 -0.00030262 471.81409099057544 102.48 0.5276 102.44 102.26 102.78 -0.045845 25 17 2 0 0 0 0.80992 2 56838 56838;56985 0.69038 0 1 2019200 + 73045 22937 48857 49913 84965;84966 84965 0.14029165533611376 VSKRRLLA 8 Unmodified _VSKRRLLA_ 0 0 0 REV__ENSG00000176624|ENST00000406189|MEX3C REV__ENSG00000176624|ENST00000406189|MEX3C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.0414733886719 2 471.813993 941.613434 -0.69976 -0.00033016 0.058362 2.7536E-05 -0.6414 -0.00030262 471.81409099057544 102.48 0.5276 102.44 102.26 102.78 -0.045845 25 17 2 0 0 0 8.7369 1 56838 56838 0.69038 0 1 2019200 + 73046 22937 48857 49913 84967 84967 0.14029165533611376 VSKTSFDMH 9 Unmodified _VSKTSFDMH_ 0 0 0 REV__ENST00000530117.5_1_1:205027631-205031234:+|nuORF REV__ENST00000530117.5_1_1:205027631-205031234:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 526.2479858398438 2 526.247492 1050.48043 NaN NaN NaN NaN NaN NaN NaN 24.86 1 21.977 21.477 22.477 -2.8831 0 0 0 0.39043 1 13562 13562 20.454 2.3186 1 + 73047 23398 48858 49914 84968 84968 -0.042790667052031495 VSKYPLRNL 9 Unmodified _VSKYPLRNL_ 0 0 0 ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1 ENSG00000115414|ENST00000354785|FN1 ENSG00000115414|ENST00000354785|FN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 363.5384216308594 3 363.885353 1088.63423 1.1312 0.00041163 0.98424 0.00035815 2.1155 0.00076978 363.88558957396157 28.048 0.27119 24.9 24.751 25.022 -3.1482 18 14 2 0 0 0 0.21021 1 15565 15565 7.609 0 1 4628900 73048 3120 48859 49915 84969 84969 0.09345711122614375 VSLGTKKKKK 10 Unmodified _VSLGTKKKKK_ 0 0 0 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 ENSG00000157895|ENST00000288757|C12orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.3099365234375 2 558.876791 1115.73903 -0.2673 -0.00014939 -0.14144 -7.905E-05 -0.40874 -0.00022844 558.8773659509366 103.79 0.1084 103.74 103.67 103.78 -0.048737 6 4 2 0 0 0 0.72607 1 57609 57609 0 0 1 1908400 73049 6549 48860 49916 84970 84970 0.18578832599155248 VSLITDELI 9 Unmodified _VSLITDELI_ 0 0 0 ENST00000261396.5_1_1:229577072-229577156:-|nuORF ENST00000261396.5_1_1:229577072-229577156:-|nuORF ENST00000261396.5_1_1:229577072-229577156:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2320556640625 2 501.789515 1001.56448 0.66257 0.00033247 1.1753 0.00058974 1.8378 0.00092221 501.79039289295713 53.23 0.2879 53.23 53.039 53.327 0 22 12 2 0 0 0 0.19205 1 29403 29403 10.074 0 1 889300 73050 11238 48861 49917 84971 84971 0.06375787663341725 VSLKLKRVK 9 Unmodified _VSLKLKRVK_ 0 0 0 REV__ENST00000449600.1_1_2:110936461-110959062:-|nuORF REV__ENST00000449600.1_1_2:110936461-110959062:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1072.072875976562 1 1070.74083 1069.73355 0.044327 4.7463E-05 -3.7353 -0.0039995 -3.691 -0.0039521 1070.7381119836425 43.135 0.085442 42.825 42.777 42.863 -0.31039 5 3 2 0 0 0 0.61381 1 22940 22940 0.52476 0 1 4680200 + 73051 27189 48862 49918 84972 84972 0.20147153807374707 VSLLLLLLLG 10 Unmodified _VSLLLLLLLG_ 0 0 0 REV__ENSG00000161609|ENST00000447857|KASH5 REV__ENSG00000161609|ENST00000447857|KASH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1054.560913085938 1 1053.7282 1052.72092 -0.24328 -0.00025635 2.387 0.0025152 2.1437 0.0022589 1053.7323349289288 44.993 0.17238 44.668 44.527 44.7 -0.32425 11 8 2 0 0 0 0.69064 1 24030 24030 3.9444 0 1 20215000 + 73052 21599 48863 49919 84973 84973 0.1966669762446145 VSLLRRNREP 10 Unmodified _VSLLRRNREP_ 0 0 0 ENSG00000123104|ENST00000381340|ITPR2;ITPR2|p.M785Nfs*4|1|0.36|ENSG00000123104|chr12:26656387-26656388|-/T|frameshift_variant ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.9153747558594 3 413.914194 1238.72075 1.789 0.00074048 1.4173 0.00058662 3.2062 0.0013271 413.91462291532946 105.03 0.13046 98.853 98.76 98.891 -6.1757 21 10 3 0 0 0 0.71123 1 70290 70290 1.9064 1.4519 1 66214000 73053 3680 48864 49920 84974 84974 0.11094090677170243 VSLLVIALD 9 Unmodified _VSLLVIALD_ 0 0 0 REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I MSMS AL20221201_MKP_PDAC_01 4 471.7970275878906 2 471.797143 941.579734 NaN NaN NaN NaN NaN NaN NaN 13.217 1 10.735 10.235 11.235 -2.482 0 0 0 0.8622 1 6697 6697 0 0 1 + 73054 18047 48865 49921 84975 84975 0.10660699251161532 VSLMSNKV 8 Unmodified _VSLMSNKV_ 0 0 0 REV__ENSG00000135220|ENST00000251566|UGT2A3 REV__ENSG00000135220|ENST00000251566|UGT2A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 439.2439270019531 2 439.244221 876.473888 0.55153 0.00024226 -0.086921 -3.818E-05 0.46461 0.00020408 439.2441001557277 36.405 0.3697 32.212 32.018 32.388 -4.1928 32 22 2 0 0 0 0.56356 1 21204 21204 29.082 2.1979 1 23418000 + 73055 20044 48866 49922 84976 84976 0.030710401340684257 VSLNYIDGP 9 Unmodified _VSLNYIDGP_ 0 0 0 REV__ENSG00000151490|ENST00000281171|PTPRO REV__ENSG00000151490|ENST00000281171|PTPRO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.493408203125 1 977.493838 976.486562 0.20424 0.00019964 1.1129 0.0010878 1.3171 0.0012875 977.4950281892905 59.198 0.27595 59.198 58.965 59.241 0 18 11 2 0 0 0 0.49272 1 32900 32900 7.9102 1.187 1 1012100 + 73056 21070 48867 49923 84977 84977 -0.0026222520206147237 VSLPRMVY 8 Unmodified _VSLPRMVY_ 0 0 0 nc|ENSG00000175164|P16442|ABO;ENSG00000175164|ENST00000538324|ABO nc|ENSG00000175164|P16442|ABO nc|ENSG00000175164|P16442|ABO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7713623046875 2 482.767863 963.521173 0.60225 0.00029075 1.4475 0.00069881 2.0498 0.00098956 482.7682537674275 86.117 0.60519 85.613 85.227 85.833 -0.50318 53 24 3 0 0 0 0.78849 1 47110 47110 9.3474 0.75416 1 1016000 73057 8487 48868 49924 84978 84978 0.03795319405060127 VSLQGRFQAF 10 Unmodified _VSLQGRFQAF_ 0 0 0 ENST00000456380.5_1_3:185644394-185649389:-|nuORF;ENST00000453386.6_1_3:185644397-185655697:-|nuORF ENST00000456380.5_1_3:185644394-185649389:-|nuORF ENST00000456380.5_1_3:185644394-185649389:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.8767395019531 3 384.876857 1151.60874 0.017811 6.8549E-06 0.22527 8.6701E-05 0.24308 9.3556E-05 384.87690414837783 17.84 0.22427 17.845 17.726 17.951 0.0050564 47 15 4 0 0 0 0.57893 1 8994 8994 7.4771 0.37534 1 4894200 73058 13555 48869 49925 84979 84979 0.03900236600156859 VSLRLDKEH 9 Unmodified _VSLRLDKEH_ 0 0 0 nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2092895507812 3 366.208495 1095.60366 -0.01536 -5.6248E-06 0.53372 0.00019545 0.51836 0.00018983 366.208881832563 2.4653 0.017284 2.4482 2.433 2.4503 -0.017019 8 6 2 0 0 0 0.61256 1 1256 1256 0.26902 0 1 254160 73059 6360 48870 49926 84980 84980 0.059679327375761204 VSLRLDKEH 9 Unmodified _VSLRLDKEH_ 0 0 0 nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.20849609375 3 366.208495 1095.60366 NaN NaN NaN NaN NaN NaN NaN 1.7987 1 1.7817 1.2817 2.2817 -0.017019 0 0 0 0.85737 1 922 922 0.26902 0 1 73060 6360 48870 49926 84981 84981 0.059679327375761204 VSLRLDKEH 9 Unmodified _VSLRLDKEH_ 0 0 0 nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2080688476562 3 366.208495 1095.60366 NaN NaN NaN NaN NaN NaN NaN 2.0628 1 2.0458 1.5458 2.5458 -0.017019 0 0 0 0.85737 1 1056 1056 0.26902 0 1 73061 6360 48870 49926 84982 84982 0.059679327375761204 VSLRLDKEH 9 Unmodified _VSLRLDKEH_ 0 0 0 nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 nc|ENSG00000154975|Q9NS85-2|CA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2084350585938 3 366.208495 1095.60366 NaN NaN NaN NaN NaN NaN NaN 2.6435 1 2.6264 2.1264 3.1264 -0.017019 0 0 0 0.85737 1 1343 1343 0.26902 0 1 73062 6360 48870 49926 84983 84983 0.059679327375761204 VSLRPVPQTM 10 Unmodified _VSLRPVPQTM_ 0 0 0 REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF REV__ENST00000491270.1_1_10:76995548-76995725:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.7565612792969 3 376.546231 1126.61686 0.78799 0.00029672 2.0286 0.00076387 2.8166 0.0010606 376.54714140331726 57.96 0.23523 57.894 57.735 57.97 -0.066036 17 11 2 0 0 0 0.23991 1 31553 31553 0.12286 0 1 1638800 + 73063 22030 48871 49927 84984 84984 0.0586204752530648 VSLSTPCRFKE 11 Unmodified _VSLSTPCRFKE_ 0 0 0 REV__ENSG00000170681|ENST00000307584|CAVIN4 REV__ENSG00000170681|ENST00000307584|CAVIN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.8897399902344 3 422.888546 1265.64381 NaN NaN NaN NaN NaN NaN NaN 19.943 1 19.943 19.443 20.443 0 0 0 0 0.94216 1 10008 10008 0.32927 0.093427 1 + 73064 22502 48872 49928 84985 84985 0.021611113458448017 VSLVISRQLL 10 Unmodified _VSLVISRQLL_ 0 0 0 nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4;ENST00000511891.5_1_4:83956377-83970479:+|nuORF;ENST00000506443.5_1_4:83956377-83978089:+|nuORF nc|ENSG00000138663|Q9BT78-2|COPS4 nc|ENSG00000138663|Q9BT78-2|COPS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5769958496094 3 376.576408 1126.70739 0.86939 0.00032739 0.31653 0.0001192 1.1859 0.00044659 376.576506707949 17.205 0.14279 14.619 14.559 14.701 -2.5866 37 23 2 0 0 0 0.69377 1 8965 8965 3.5871 0 1 3091700 73065 5081 48873 49929 84986 84986 0.14910839845242663 VSLWRPKL 8 Unmodified _VSLWRPKL_ 0 0 0 ENST00000537798.5_1_1:46049739-46056897:+|nuORF;ENST00000525515.5_1_1:46049739-46067938:+|nuORF ENST00000537798.5_1_1:46049739-46056897:+|nuORF ENST00000537798.5_1_1:46049739-46056897:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 499.7674560546875 2 499.810919 997.607286 0.8146 0.00040715 -4.3184 -0.0021584 -3.5038 -0.0017512 499.8086039903383 31.894 0.20463 28.198 28.066 28.271 -3.6958 15 10 2 0 0 0 8.7369 1 18088 18088 20.871 5.103 1 8195900 73066 14799 48874 49930 84987 84987 0.10838647302068694 VSMCQGNRD 9 Unmodified _VSMCQGNRD_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7335205078125 2 505.213126 1008.4117 -0.46078 -0.00023279 2.8356 0.0014326 2.3749 0.0011998 505.2144406537047 69.492 0.25716 69.013 68.829 69.086 -0.47903 16 10 2 0 0 0 0.21185 1 38022 38022 6.2058 1.8765 1 301040 73067 5036 48875 49931 84988 84988 -0.09217054276575709 VSMGELWAF 9 Unmodified _VSMGELWAF_ 0 0 0 ENSG00000099960|ENST00000382932|SLC7A4 ENSG00000099960|ENST00000382932|SLC7A4 ENSG00000099960|ENST00000382932|SLC7A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2494506835938 2 520.249503 1038.48445 NaN NaN NaN NaN NaN NaN NaN 46.013 1 45.985 45.485 46.485 -0.028011 0 0 0 0.7243 1 24742 24742 8.5933 1.304 1 73068 1729 48876 49932 84989 84989 -0.03324977211514124 VSMIECYSE 9 Unmodified _VSMIECYSE_ 0 0 0 REV__ENST00000446176.6_1_9:132650088-132650340:-|nuORF REV__ENST00000446176.6_1_9:132650088-132650340:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7206420898438 2 530.719918 1059.42528 0.91119 0.00048359 -0.61831 -0.00032815 0.29288 0.00015544 530.71952778684 72.486 0.67628 66.31 65.941 66.618 -6.1757 85 34 3 0 0 0 0.52067 1 47580 47580 6.2058 0.44535 1 60543000 + 73069 27137 48877 49933 84990 84990 -0.10205241288008438 VSMKKPEPY 9 Unmodified _VSMKKPEPY_ 0 0 0 REV__nc|ENSG00000114013|P42081-4|CD86 REV__nc|ENSG00000114013|P42081-4|CD86 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2553100585938 2 539.78371 1077.55287 0.17698 9.553E-05 -1.6643 -0.00089838 -1.4874 -0.00080285 539.7828069141663 51.967 0.11368 51.534 51.456 51.569 -0.43367 8 5 2 0 0 0 0.20528 1 28034 28034 4.756 0.42677 1 2391700 + 73070 18900 48878 49934 84991 84991 0.017192673683439352 VSMPITELT 9 Unmodified _VSMPITELT_ 0 0 0 REV__ENST00000592904.5_1_19:9524750-9525065:-|nuORF REV__ENST00000592904.5_1_19:9524750-9525065:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.7623901367188 2 495.762443 989.510333 NaN NaN NaN NaN NaN NaN NaN 3.699 1 1.217 0.71703 1.717 -2.482 0 0 0 0.8622 1 1878 1878 0 0 1 + 73071 29185 48879 49935 84992 84992 0.015158722400997249 VSNKVRILE 9 Unmodified _VSNKVRILE_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1;ENST00000559133.5_3_15:48703189-48720097:-|nuORF ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.2166748046875 3 353.216991 1056.62914 NaN NaN NaN NaN NaN NaN NaN 52.15 1 51.717 51.217 52.217 -0.43367 0 0 0 0.8622 1 28157 28157 0 0 1 73072 7437 48880 49936 84993 84993 0.10309407260024273 VSNQVGEFPD 10 Unmodified _VSNQVGEFPD_ 0 0 0 ENSG00000198911|ENST00000361204|SREBF2;nc|ENSG00000198911|Q12772-2|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 ENSG00000198911|ENST00000361204|SREBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.253173828125 2 546.253828 1090.4931 0.24723 0.00013505 -0.031214 -1.7051E-05 0.21601 0.000118 546.2537536773092 26.719 0.50503 26.747 26.59 27.095 0.028664 54 22 3 0 0 0 0.62068 1 14028 14028 10.074 0.6908 1 63680000 73073 10194 48881 49937 84994 84994 -0.04852332041309637 VSNVLPVLGQ 10 Unmodified _VSNVLPVLGQ_ 0 0 0 REV__CON__Q32PJ2 REV__CON__Q32PJ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3456420898438 2 513.303124 1024.5917 NaN NaN NaN NaN NaN NaN NaN 104.12 1 104.07 103.57 104.57 -0.048737 0 0 0 0.99388 1 57809 57809 1.3295 0 1 + + 73074 16874 48882 49938 84995 84995 0.0803831599437217 VSNVSVDWI 9 Unmodified _VSNVSVDWI_ 0 0 0 REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF REV__ENST00000515743.5_1_4:10078742-10093271:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7649841308594 2 509.763832 1017.51311 0.66436 0.00033867 1.1066 0.0005641 1.7709 0.00090276 509.76448887153146 73.269 0.49298 67.093 66.855 67.348 -6.1757 54 23 3 0 0 0 0.12424 1 47946 47946 30.637 2.1497 1 69523000 + 73075 17490 48883 49939 84996 84996 0.0050546368928507945 VSPCWPEWSQ 10 Unmodified _VSPCWPEWSQ_ 0 0 0 AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|24|3|anti-sense AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|24|3|anti-sense AluSx4_dup10100|chr19:17815233-17815538:+|2.7877114735660875|0.4987342787699046|2.48|178.0|24|3|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8463439941406 3 406.846458 1217.51754 0.17617 7.1673E-05 -0.028326 -1.1524E-05 0.14784 6.0149E-05 406.8463402766978 40.261 0.19075 40.266 40.169 40.36 0.0050545 15 8 2 0 0 0 0.69377 1 21459 21459 3.5871 2.3722 1 3076600 73076 26 48884 49940 84997 84997 -0.08251395159459207 VSPDSASVSY 10 Unmodified _VSPDSASVSY_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2332458496094 2 506.235104 1010.45566 0.59451 0.00030096 -0.46094 -0.00023334 0.13357 6.7616E-05 506.23486880477316 39.213 0.45196 39.213 38.929 39.381 0 73 21 5 0 0 0 0.074936 1 20919 20919 52.268 8.4101 1 74826000 + 73077 21461 48885 49941 84998 84998 -0.04915423306943012 VSPDSASVSY 10 Unmodified _VSPDSASVSY_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2357788085938 2 506.235104 1010.45566 0.39046 0.00019766 0.35128 0.00017783 0.74174 0.00037549 506.2358262107968 39.217 0.21712 39.229 39.106 39.323 0.011456 15 9 3 0 0 0 0.66569 1 20915 20915 6.7232 1.9672 1 585960 + 73078 21461 48885 49941 84999 84999 -0.04915423306943012 VSPDSASVSY 10 Unmodified _VSPDSASVSY_ 0 0 0 REV__nc|ENSG00000159140|P18583-6|SON REV__nc|ENSG00000159140|P18583-6|SON MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.23681640625 2 506.235104 1010.45566 0.47129 0.00023858 0.42129 0.00021327 0.89258 0.00045186 506.2352868162518 46.25 0.48621 41.295 40.999 41.485 -4.9549 95 32 4 0 0 0 0.020813 1 28399 28399 74.929 0 1 210320000 + 73079 21461 48885 49941 85000 85000 -0.04915423306943012 VSPESVEASPA 11 Unmodified _VSPESVEASPA_ 0 0 0 ENST00000443339.5_1_3:9471730-9475758:+|nuORF ENST00000443339.5_1_3:9471730-9475758:+|nuORF ENST00000443339.5_1_3:9471730-9475758:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7640380859375 2 536.761486 1071.50842 0.41113 0.00022068 1.9831 0.0010644 2.3942 0.0012851 536.7633410256591 72.66 0.35876 72.66 72.461 72.819 0 41 16 3 0 0 0 0.39949 2 40411 40411;40512 21.537 7.6309 1 3107300 73080 13420 48886 49942 85001;85002 85001 -0.024474652441313083 VSPGAPILI 9 Unmodified _VSPGAPILI_ 0 0 0 REV__ENST00000524867.1_1_11:810234-811767:+|nuORF REV__ENST00000524867.1_1_11:810234-811767:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.7720336914062 2 433.770929 865.527304 0.32796 0.00014226 1.4398 0.00062454 1.7678 0.0007668 433.77172924938975 76.176 0.75272 76.224 75.968 76.72 0.047951 50 31 2 0 0 0 0.2191 1 42185 42185 0 0 1 12093000 + 73081 28339 48887 49943 85003 85003 0.08916160908245274 VSPGPRPVL 9 Unmodified _VSPGPRPVL_ 0 0 0 nc|ENSG00000148840|Q5VV67-2|PPRC1;ENSG00000148840|ENST00000278070|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 nc|ENSG00000148840|Q5VV67-2|PPRC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 461.7311096191406 2 461.279452 920.544351 1.0548 0.00048657 -0.95287 -0.00043954 0.10195 4.703E-05 461.27887534784946 32.266 0.40336 28.41 28.179 28.582 -3.8562 39 23 2 0 0 0 0.094631 1 18242 18242 32.305 2.0807 1 20521000 73082 5968 48888 49944 85004 85004 0.08090081514046688 VSPHHPAP 8 Unmodified _VSPHHPAP_ 0 0 0 ENST00000469087.1_1_21:36206419-36206857:-|nuORF;nc|ENSG00000159216|Q01196-7|RUNX1;nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;RUNX1|p.Q259Ifs*26|1|0.04|ENSG00000159216|chr21:34799412-34799413|-/AT|frameshift_variant;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;ENSG00000159216|ENST00000675419|RUNX1 ENST00000469087.1_1_21:36206419-36206857:-|nuORF ENST00000469087.1_1_21:36206419-36206857:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.3412170410156 2 421.219395 840.424236 NaN NaN NaN NaN NaN NaN NaN 102.57 1 102.53 102.03 103.03 -0.045853 0 0 0 0.97444 1 56974 56974 0.69038 0 1 73083 6637 48889 49945 85005 85005 -0.0023590675972400277 VSPIGSVV 8 Unmodified _VSPIGSVV_ 0 0 0 REV__ENSG00000198746|ENST00000361720|GPATCH3 REV__ENSG00000198746|ENST00000361720|GPATCH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.2277221679688 2 379.226354 756.438155 -0.69993 -0.00026543 1.4916 0.00056566 0.79169 0.00030023 379.2264979217169 55.396 0.2041 55.396 55.305 55.509 0 12 8 2 0 0 0 0.80992 1 30829 30829 0.69038 0 1 680050 + 73084 24051 48890 49946 85006 85006 0.050193259487173236 VSPIGSVV 8 Unmodified _VSPIGSVV_ 0 0 0 REV__ENSG00000198746|ENST00000361720|GPATCH3 REV__ENSG00000198746|ENST00000361720|GPATCH3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 379.226354 756.438155 -0.69993 -0.00026543 1.4916 0.00056566 0.79169 0.00030023 379.2264979217169 55.396 0.2041 55.396 55.305 55.509 0 0.01171 0.00044397 NaN 0.69038 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 680050 + 73085 24051 48890 49946 0.050193259487173236 VSPIKRPRTKK 11 Unmodified _VSPIKRPRTKK_ 0 0 0 REV__ENSG00000130508|ENST00000252804|PXDN REV__ENSG00000130508|ENST00000252804|PXDN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1310.177612304688 1 1309.84266 1308.83539 0.98816 0.0012943 -0.99522 -0.0013036 -0.0070605 -9.2482E-06 1310.8458408111583 42.935 0.24113 42.92 42.758 42.999 -0.015667 12 10 2 0 0 0 0.30605 1 22919 22919 0 0 1 8123300 + 73086 19723 48891 49947 85007 85007 0.1933240015910087 VSPLDLLPPP 10 Unmodified _VSPLDLLPPP_ 0 0 0 REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF REV__ENST00000326956.11_1_1:54691347-54691953:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3076171875 2 524.307875 1046.6012 0.15818 8.2934E-05 -0.031565 -1.655E-05 0.12661 6.6384E-05 524.3075886696669 58.379 0.22977 57.888 57.798 58.028 -0.49079 14 10 2 0 0 0 0.14917 1 31774 31774 39.957 5.8549 1 1544100 + 73087 25568 48892 49948 85008 85008 0.07976084279903262 VSPLLDAL 8 Unmodified _VSPLLDAL_ 0 0 0 REV__ENSG00000130363|ENST00000367069|RSPH3 REV__ENSG00000130363|ENST00000367069|RSPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.2480163574219 2 414.247286 826.48002 -0.14573 -6.037E-05 2.6977 0.0011175 2.5519 0.0010571 414.2482887161146 33.191 0.2025 33.22 33.093 33.295 0.028931 11 8 2 0 0 0 0.78849 1 17460 17460 9.3474 0 1 664970 + 73088 19718 48893 49949 85009 85009 0.05983881637234845 VSPPRKSSV 9 Unmodified _VSPPRKSSV_ 0 0 0 REV__nc|ENSG00000125386|P78312-4|FAM193A REV__nc|ENSG00000125386|P78312-4|FAM193A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.258544921875 2 478.779816 955.545079 1.0153 0.00048609 -2.3076 -0.0011048 -1.2924 -0.00061875 478.7780333388361 54.529 0.17912 54.529 54.462 54.641 0 11 7 2 0 0 0 0.19613 1 30259 30259 12.532 3.9383 1 361500 + 73089 19489 48894 49950 85010 85010 0.06552876163095789 VSPQHKRP 8 Unmodified _VSPQHKRP_ 0 0 0 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 REV__nc|ENSG00000124496|Q96PN7-2|TRERF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7724304199219 2 474.772326 947.530098 NaN NaN NaN NaN NaN NaN NaN 15.335 1 15.341 14.841 15.841 0.0057774 0 0 0 0.97444 1 7639 7639 2.3027 0 1 + 73090 19452 48895 49951 85011 85011 0.05423429085760745 VSPRGRGP 8 Unmodified _VSPRGRGP_ 0 0 0 ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.4681396484375 1 825.468961 824.461684 -1.2153 -0.0010032 1.5215 0.001256 0.30618 0.00025274 825.4701439866648 77.7 0.28413 77.217 77.049 77.333 -0.4826 22 12 2 0 0 0 0.81107 1 42504 42504 0 0 1 1026600 73091 12476 48896 49952 85012 85012 0.04243184505912723 VSPRGRGP 8 Unmodified _VSPRGRGP_ 0 0 0 ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.238525390625 2 413.238119 824.461684 -0.77289 -0.00031939 1.2461 0.00051495 0.47324 0.00019556 413.23852987804145 77.688 0.46508 77.205 76.956 77.421 -0.4826 66 22 4 0 0 0 0.81107 1 42547 42547 0 0 1 28426000 73092 12476 48896 49952 85013 85013 0.04243184505912723 VSPRGRGP 8 Unmodified _VSPRGRGP_ 0 0 0 ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF ENST00000375412.9_2_9:96214723-96215017:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 413.238119 824.461684 -0.05712 -2.3604E-05 0.53603 0.00022151 0.47891 0.0001979 413.23829809156564 77.213 0.4298 77.263 77.033 77.463 0.05011 0.028638 -0.00030069 NaN 0 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 9402300 73093 12476 48896 49952 0.04243184505912723 VSPRPTPLL 9 Unmodified _VSPRPTPLL_ 0 0 0 REV__LAMA5-CABLES2|1|fusion REV__LAMA5-CABLES2|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.3003845214844 2 490.300384 978.586216 1.5627 0.0007662 -0.24862 -0.0001219 1.3141 0.0006443 490.30031304691033 50.301 0.60818 50.253 49.947 50.555 -0.048828 68 29 3 0 0 0 0.32235 1 27347 27347 16.149 0 1 4968500 + 73094 29448 48897 49953 85014 85014 0.0960663720258026 VSPSPFAMSP 10 Unmodified _VSPSPFAMSP_ 0 0 0 ENST00000306688.7_1_17:79988810-79988963:+|nuORF ENST00000306688.7_1_17:79988810-79988963:+|nuORF ENST00000306688.7_1_17:79988810-79988963:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2476806640625 2 510.24696 1018.47937 1.0304 0.00052578 0.07342 3.7462E-05 1.1039 0.00056324 510.24684387201296 57.45 0.25674 57.384 57.201 57.458 -0.066036 20 12 3 0 0 0 0.52888 1 31257 31257 14.838 2.3067 1 1571200 73095 11632 48898 49954 85015 85015 -0.029132810741202775 VSQCHLATSGQ 11 Unmodified _VSQCHLATSGQ_ 0 0 0 REV__ENST00000523387.5_1_8:2986336-3141840:-|nuORF REV__ENST00000523387.5_1_8:2986336-3141840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2685546875 2 565.76658 1129.51861 0.19447 0.00011002 0.76975 0.0004355 0.96421 0.00054552 565.7669819777565 44.805 0.9883 44.783 44.261 45.249 -0.022068 101 52 3 0 0 0 0.44182 1 23818 23818 19.362 0 1 28680000 + 73096 23323 48899 49955 85016 85016 -0.040971807905634705 VSQFFNDVFQ 10 Unmodified _VSQFFNDVFQ_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1994018554688 3 410.864506 1229.57169 1.5845 0.00065103 0.27316 0.00011223 1.8577 0.00076326 411.19906483679716 47.443 0.36419 42.209 42.087 42.451 -5.2339 34 20 2 0 0 0 0.47059 1 29445 29445 17.863 1.2973 1 11726000 + 73097 23848 48900 49956 85017 85017 -0.03391479736251313 VSQKLYTWSFF 11 Unmodified _VSQKLYTWSFF_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 703.3582153320312 2 703.36117 1404.70779 NaN NaN NaN NaN NaN NaN NaN 29.15 1 29.15 28.65 29.65 0 0 0 0 0.94002 1 15090 15090 2.4985 0.21571 1 73098 15914 48901 49957 85018 85018 0.021622147743983078 VSQPARSGL 9 Unmodified _VSQPARSGL_ 0 0 0 REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.7565307617188 2 457.756341 913.498129 0.29214 0.00013373 0.46816 0.0002143 0.7603 0.00034803 457.7566502124703 24.62 0.32899 21.736 21.559 21.888 -2.8831 33 17 2 0 0 0 0.017075 1 13408 13408 66.457 15.602 1 9434400 + 73099 25458 48902 49958 85019 85019 0.03792016611953386 VSQPDSQEGPF 11 Unmodified _VSQPDSQEGPF_ 0 0 0 ENSG00000171872|ENST00000372299|KLF17 ENSG00000171872|ENST00000372299|KLF17 ENSG00000171872|ENST00000372299|KLF17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.76806640625 2 595.769842 1189.52513 -0.0043831 -2.6113E-06 -1.336 -0.00079594 -1.3404 -0.00079855 595.76911825787 60.56 0.25956 60.071 59.99 60.249 -0.48932 18 12 2 0 0 0 0.64126 1 32983 32983 7.609 0 1 2433300 73100 8154 48903 49959 85020 85020 -0.06204964358175857 VSQPQISR 8 Unmodified _VSQPQISR_ 0 0 0 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 ENSG00000173825|ENST00000309880|TIGD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7564392089844 2 457.756341 913.498129 0.067051 3.0693E-05 -0.24906 -0.00011401 -0.18201 -8.3314E-05 457.7562662893962 21.786 0.22083 21.786 21.645 21.866 0 65 35 2 0 0 0 0.66338 1 10990 10990 20.454 0 1 1802700 73101 8368 48904 49960 85021 85021 0.03792016611942017 VSRATRLTA 9 Unmodified _VSRATRLTA_ 0 0 0 REV__ENST00000377016.8_1_6:29595320-29599222:-|nuORF REV__ENST00000377016.8_1_6:29595320-29599222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7908630371094 2 487.790715 973.566878 0.62839 0.00030652 -0.024273 -1.184E-05 0.60412 0.00029468 487.79064345290396 86.454 0.46928 85.95 85.722 86.191 -0.50318 59 19 4 0 0 0 0.62242 1 47227 47227 0 0 1 6693600 + 73102 26237 48905 49961 85022 85022 0.07903680911636002 VSREWGRPPS 10 Unmodified _VSREWGRPPS_ 0 0 0 ENST00000469172.5_1_10:70091580-70091955:+|nuORF ENST00000469172.5_1_10:70091580-70091955:+|nuORF ENST00000469172.5_1_10:70091580-70091955:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 390.5392150878906 3 390.871995 1169.59415 1.3414 0.00052431 3.349 0.001309 4.6904 0.0018333 390.8734220319457 19.606 0.1705 16.95 16.845 17.016 -2.6564 18 14 2 0 0 0 0.22949 1 10375 10375 7.9454 0 1 5578700 73103 13826 48906 49962 85023 85023 0.016141644520530463 VSRFWRHRKVD 11 Unmodified _VSRFWRHRKVD_ 0 0 0 REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.9433898925781 3 495.944376 1484.8113 NaN NaN NaN NaN NaN NaN NaN 17.123 1 17.124 16.624 17.624 0.0010548 0 0 0 0.9428 1 8491 8491 0.50596 0.41111 1 + 73104 28839 48907 49963 85024 85024 0.08828559725407104 VSRGLSVALH 10 Unmodified _VSRGLSVALH_ 0 0 0 REV__IGSF8|p.F202L|1|0.31|ENSG00000162729|chr1:160094008-160094008|A/C|missense_variant REV__IGSF8|p.F202L|1|0.31|ENSG00000162729|chr1:160094008-160094008|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.8065185546875 2 519.806365 1037.59818 0.52266 0.00027168 -0.26664 -0.0001386 0.25602 0.00013308 519.8060228775291 29.007 0.16038 28.945 28.856 29.016 -0.062159 12 6 2 0 0 0 0.27276 1 15015 15015 29.082 0 1 4345700 + 73105 29391 48908 49964 85025 85025 0.08088253945743418 VSRGPARL 8 Unmodified _VSRGPARL_ 0 0 0 REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.2618408203125 2 428.261594 854.508634 0.5559 0.00023807 -0.057739 -2.4728E-05 0.49816 0.00021334 428.261624622762 82.778 0.50363 82.281 81.964 82.467 -0.49751 38 21 2 0 0 0 0.80975 1 45315 45315 0.79363 0 1 1237700 + 73106 28137 48909 49965 85026 85026 0.07556044057025701 VSRGPARL 8 Unmodified _VSRGPARL_ 0 0 0 REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 428.261594 854.508634 0.5559 0.00023807 -0.057739 -2.4728E-05 0.49816 0.00021334 428.261624622762 82.778 0.50363 82.281 81.964 82.467 -0.49751 0 0 NaN 0.79363 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1237700 + 73107 28137 48909 49965 0.07556044057025701 VSRIPSETY 9 Unmodified _VSRIPSETY_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2749633789062 2 526.274564 1050.53457 1.1389 0.00059936 1.9623 0.0010327 3.1012 0.0016321 526.2742831356899 50.429 0.38787 44.89 44.663 45.051 -5.5391 60 24 3 0 0 0 0.08691 1 31665 31665 36.127 5.4905 1 32867000 73108 6254 48910 49966 85027 85027 0.011328487180207958 VSRLDRESI 9 Unmodified _VSRLDRESI_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.0283813476562 3 358.86825 1073.58292 -0.64305 -0.00023077 0.36383 0.00013057 -0.27922 -0.0001002 358.8687119986861 28.596 0.15901 28.596 28.503 28.662 0 11 7 2 0 0 0 0.20728 1 14750 14750 9.544 0 1 1160700 73109 9951 48911 49967 85028 85028 0.04907342357910238 VSRMYVDVK 9 Unmodified _VSRMYVDVK_ 0 0 0 ENST00000585803.1_1_18:57863810-57864818:+|nuORF ENST00000585803.1_1_18:57863810-57864818:+|nuORF ENST00000585803.1_1_18:57863810-57864818:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.2012023925781 3 366.198831 1095.57467 NaN NaN NaN NaN NaN NaN NaN 3.2112 1 3.1989 2.6989 3.6989 -0.012334 0 0 0 0.84564 1 1629 1629 1.0715 0.3738 1 73110 15614 48912 49968 85029 85029 0.030700721169068856 VSRNPQVL 8 Unmodified _VSRNPQVL_ 0 0 0 ENST00000372706.5_1_1:40944843-40944963:+|nuORF ENST00000372706.5_1_1:40944843-40944963:+|nuORF ENST00000372706.5_1_1:40944843-40944963:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.7379455566406 2 456.766709 911.518865 -0.53609 -0.00024487 0.30732 0.00014037 -0.22876 -0.00010449 456.76685166059593 32.829 0.23049 32.829 32.677 32.908 0 17 11 2 0 0 0 0.67686 1 17127 17127 19.257 3.1079 1 2394600 73111 12386 48913 49969 85030 85030 0.05956606991605895 VSRPPPGPI 9 Unmodified _VSRPPPGPI_ 0 0 0 REV__nc|ENSG00000138709|Q659C4-3|LARP1B REV__nc|ENSG00000138709|Q659C4-3|LARP1B MSMS AL20221201_MKP_PDAC_01 4 460.2720336914062 2 460.271627 918.528701 NaN NaN NaN NaN NaN NaN NaN 38.773 1 34.322 33.822 34.822 -4.4509 0 0 0 0.43483 1 22920 22920 18.146 0.011366 1 + 73112 20356 48914 49970 85031 85031 0.0661779499697559 VSRRGMERL 9 Unmodified _VSRRGMERL_ 0 0 0 REV__ENST00000579650.5_1_17:27031489-27037901:-|nuORF REV__ENST00000579650.5_1_17:27031489-27037901:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1621398925781 3 368.541592 1102.60295 -0.45575 -0.00016796 0.55455 0.00020438 0.098804 3.6413E-05 368.54174783978385 28.976 0.17942 28.976 28.903 29.082 0 13 8 2 0 0 0 0.21889 1 14971 14971 0.26902 0 1 523720 + 73113 29053 48915 49971 85032 85032 0.05574814816873186 VSRSVIYLLF 10 Unmodified _VSRSVIYLLF_ 0 0 0 ENST00000354300.4_1_12:110973101-110973269:-|nuORF ENST00000354300.4_1_12:110973101-110973269:-|nuORF ENST00000354300.4_1_12:110973101-110973269:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.5732727050781 3 399.572775 1195.69649 0.57405 0.00022937 0.52333 0.00020911 1.0974 0.00043848 399.90732158442376 46.399 0.19739 41.318 41.175 41.372 -5.0805 21 13 2 0 0 0 0.52659 1 28617 28617 14.957 0 1 22659000 73114 12062 48916 49972 85033 85033 0.1064743747092507 VSRVLKSTV 9 Unmodified _VSRVLKSTV_ 0 0 0 ENST00000395003.5_2_5:133861893-133861941:+|nuORF ENST00000395003.5_2_5:133861893-133861941:+|nuORF ENST00000395003.5_2_5:133861893-133861941:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.8140258789062 2 494.811116 987.60768 0.62146 0.0003075 1.4818 0.0007332 2.1032 0.0010407 494.81214841451146 28.292 0.25947 25.143 25.003 25.262 -3.1482 25 13 2 0 0 0 0.053952 1 15847 15847 43.982 2.1422 1 14149000 73115 12757 48917 49973 85034 85034 0.11338022231279865 VSRWAGPG 8 Unmodified _VSRWAGPG_ 0 0 0 ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 415.2193298339844 2 415.219395 828.424236 NaN NaN NaN NaN NaN NaN NaN 28.37 1 28.37 27.87 28.87 0 0 0 0 0.94494 1 14651 14651 11.64 0.81637 1 73116 13796 48918 49974 85035 85035 0.003160932402806793 VSRWAGPG 8 Unmodified _VSRWAGPG_ 0 0 0 ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.7203979492188 2 415.219395 828.424236 0.5696 0.00023651 -0.47434 -0.00019696 0.095262 3.9555E-05 415.21924248988745 28.269 0.24764 28.222 28.113 28.361 -0.046408 17 9 2 0 0 0 0.40035 1 14577 14577 44.407 4.4497 1 17988000 73117 13796 48918 49974 85036 85036 0.003160932402806793 VSRWAGPG 8 Unmodified _VSRWAGPG_ 0 0 0 ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF ENST00000468090.5_1_21:45176148-45176358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2200927734375 2 415.219395 828.424236 0.052435 2.1772E-05 0.84901 0.00035253 0.90145 0.0003743 415.2196938483284 28.185 0.24949 28.215 28.083 28.332 0.029564 22 9 3 0 0 0 0.48669 1 14642 14642 36.044 3.7387 1 7210500 73118 13796 48918 49974 85037 85037 0.003160932402806793 VSSAPTLL 8 Unmodified _VSSAPTLL_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8441162109375 2 394.231636 786.448719 0.9472 0.00037342 3.2197 0.0012693 4.1669 0.0016427 394.2327771738077 49.842 0.23942 49.793 49.626 49.865 -0.048824 14 11 2 0 0 0 8.7369 1 26968 26968 0 0 1 589310 73119 3815 48919 49975 85038 85038 0.046953086031635394 VSSDGSPYKNI 11 Unmodified _VSSDGSPYKNI_ 0 0 0 ENST00000568357.1_1_15:42483660-42500351:-|nuORF ENST00000568357.1_1_15:42483660-42500351:-|nuORF ENST00000568357.1_1_15:42483660-42500351:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5279846191406 3 389.527782 1165.56152 -0.0076791 -2.9912E-06 0.72009 0.0002805 0.71241 0.0002775 389.5282871278343 39.962 0.31787 39.962 39.792 40.11 0 59 15 5 0 0 0 0.71341 1 21526 21526 1.2148 0 1 60064000 73120 15450 48920 49976 85039 85039 -0.014640874614542554 VSSHCSLDWL 10 Unmodified _VSSHCSLDWL_ 0 0 0 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 REV__nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS AL20221201_MKP_PDAC_01 4 573.7650756835938 2 573.766049 1145.51754 NaN NaN NaN NaN NaN NaN NaN 37.59 1 33.26 32.76 33.76 -4.3305 0 0 0 0.38297 1 22079 22079 32.305 3.2239 1 + 73121 29850 48921 49977 85040 85040 -0.04939395159453852 VSSINNIAE 9 Unmodified _VSSINNIAE_ 0 0 0 nc|ENSG00000134812|P27352-2|CBLIF;ENSG00000134812|ENST00000257248|CBLIF nc|ENSG00000134812|P27352-2|CBLIF nc|ENSG00000134812|P27352-2|CBLIF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 946.468505859375 1 946.484002 945.476725 -0.40537 -0.00038367 -3.0508 -0.0028875 -3.4562 -0.0032712 946.4793781710589 65.461 0.69282 65.461 65.117 65.81 0 58 28 3 0 0 0 0.59532 1 36338 36338 1.6526 0 1 5354700 73122 4642 48922 49978 85041 85041 0.001805867925554594 VSSKNATSNNS 11 Unmodified _VSSKNATSNNS_ 0 0 0 REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant REV__KANSL1|p.Q958Pfs*16|1|0.13|ENSG00000120071|chr17:46032264-46032265|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.764892578125 2 554.765091 1107.51563 NaN NaN NaN NaN NaN NaN NaN 20.96 1 20.988 20.488 21.488 0.028357 0 0 0 0.9435 1 10622 10622 0 0 1 + 73123 19226 48923 49979 85042 85042 -0.03382732643717645 VSSLVTAEVP 10 Unmodified _VSSLVTAEVP_ 0 0 0 REV__ENST00000338779.10_1_16:70696382-70696562:-|nuORF REV__ENST00000338779.10_1_16:70696382-70696562:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 501.2806091308594 2 501.279315 1000.54408 NaN NaN NaN NaN NaN NaN NaN 43.919 1 39.154 38.654 39.654 -4.7648 0 0 0 0.51756 1 26742 26742 25.399 4.9457 1 + 73124 25675 48924 49980 85043 85043 0.04382617003523137 VSSMIMHLISL 11 Unmodified _VSSMIMHLISL_ 0 0 0 REV__ENSG00000083097|ENST00000349129|DOP1A REV__ENSG00000083097|ENST00000349129|DOP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8316040039062 2 615.832877 1229.6512 -0.45774 -0.00028189 -1.0469 -0.00064473 -1.5047 -0.00092662 615.8320537219419 32.992 0.21754 32.992 32.87 33.088 0 22 10 3 0 0 0 0.39949 1 17265 17265 21.537 1.1224 1 3115900 + 73125 17712 48925 49981 85044 85044 0.045561276219132196 VSSPLLLSI 9 Unmodified _VSSPLLLSI_ 0 0 0 ENST00000394945.5_1_5:136314178-136314286:-|nuORF ENST00000394945.5_1_5:136314178-136314286:-|nuORF ENST00000394945.5_1_5:136314178-136314286:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2911682128906 2 464.789318 927.564084 0.36081 0.0001677 0.23446 0.00010897 0.59527 0.00027668 464.78935922375416 87.306 0.33818 86.801 86.608 86.946 -0.50423 24 13 2 0 0 0 0.087258 2 47716 47716;47810 36.044 0 1 1826300 73126 12749 48926 49982 85045;85046 85045 0.09740412734140591 VSSRLANNQVI 11 Unmodified _VSSRLANNQVI_ 0 0 0 ENSG00000221923|ENST00000422689|ZNF880 ENSG00000221923|ENST00000422689|ZNF880 ENSG00000221923|ENST00000422689|ZNF880 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8947448730469 3 400.894688 1199.66223 -0.52937 -0.00021222 0.52188 0.00020922 -0.0074968 -3.0054E-06 400.894821174939 18.922 0.14789 18.945 18.86 19.008 0.023106 17 9 2 0 0 0 0.69708 1 9496 9496 3.8459 2.0635 1 2079600 73127 10559 48927 49983 85047 85047 0.07038989312036392 VSSSAKSA 8 Unmodified _VSSSAKSA_ 0 0 0 REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 368.4440612792969 2 368.695418 735.376283 NaN NaN NaN NaN NaN NaN NaN 62.102 1 55.927 55.427 56.427 -6.1757 0 0 0 0.97444 1 40047 40047 2.5775 0 1 + 73128 27171 48928 49984 85048 85048 -0.001990254704310246 VSSSQFPLF 9 Unmodified _VSSSQFPLF_ 0 0 0 REV__ENST00000541704.2_1_12:109549217-109563236:+|nuORF REV__ENST00000541704.2_1_12:109549217-109563236:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2605285644531 2 506.260925 1010.5073 0.4353 0.00022038 -1.1514 -0.00058289 -0.71605 -0.00036251 506.2600442972271 85.851 0.23624 85.851 85.677 85.913 0 17 9 2 0 0 0 0.56345 1 47534 47534 3.5965 0.70727 1 337310 + 73129 28603 48929 49985 85049 85049 0.0024636517762246513 VSSSQFPLF 9 Unmodified _VSSSQFPLF_ 0 0 0 REV__ENST00000541704.2_1_12:109549217-109563236:+|nuORF REV__ENST00000541704.2_1_12:109549217-109563236:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.260925 1010.5073 0.4353 0.00022038 -1.1514 -0.00058289 -0.71605 -0.00036251 506.2600442972271 85.851 0.23624 85.851 85.677 85.913 0 0.016261 0.00060259 NaN 3.5965 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 337310 + 73130 28603 48929 49985 0.0024636517762246513 VSSSYLSWY 9 Unmodified _VSSSYLSWY_ 0 0 0 nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7 nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7 nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2537841796875 2 546.25584 1090.49713 NaN NaN NaN NaN NaN NaN NaN 27.682 1 27.711 27.211 28.211 0.028664 0 0 0 0.39043 1 14392 14392 20.454 3.5113 1 73131 16556 48930 49986 85050 85050 -0.04450242547613925 VSSTMDLSTST 11 Unmodified _VSSTMDLSTST_ 0 0 0 ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7595825195312 2 564.758086 1127.50162 0.72532 0.00040963 2.5773 0.0014555 3.3026 0.0018652 564.7588082470429 56.687 0.28215 56.618 56.538 56.82 -0.068737 29 13 3 0 0 0 0.064513 1 30848 30848 47.749 13.347 1 6404800 73132 5243 48931 49987 85051 85051 -0.05703146187033781 VSSTMDLSTST 11 Unmodified _VSSTMDLSTST_ 0 0 0 ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33;nc|ENSG00000140481|Q8N5R6-2|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 ENSG00000140481|ENST00000398814|CCDC33 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 564.758086 1127.50162 0.72532 0.00040963 2.5773 0.0014555 3.3026 0.0018652 564.7588082470429 56.687 0.28215 56.618 56.538 56.82 -0.068737 0 0 NaN 47.749 29 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6404800 73133 5243 48931 49987 -0.05703146187033781 VSSTNVGSNTY 11 Unmodified _VSSTNVGSNTY_ 0 0 0 IAPP|p.L60V|1|0.47|ENSG00000121351|chr12:21378334-21378334|C/G|missense_variant IAPP|p.L60V|1|0.47|ENSG00000121351|chr12:21378334-21378334|C/G|missense_variant IAPP|p.L60V|1|0.47|ENSG00000121351|chr12:21378334-21378334|C/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7589111328125 2 564.762017 1127.50948 1.0151 0.0005733 -4.264 -0.0024081 -3.2489 -0.0018348 564.7591419170465 46.198 0.18603 46.164 46.038 46.224 -0.033417 22 8 3 0 0 0 0.073778 1 24843 24843 45.74 5.7902 1 3265800 73134 15929 48932 49988 85052 85052 -0.049172508752235444 VSSTPATDYF 10 Unmodified _VSSTPATDYF_ 0 0 0 nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8 nc|ENSG00000091039|Q9BZF1-3|OSBPL8 nc|ENSG00000091039|Q9BZF1-3|OSBPL8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7526245117188 2 544.250754 1086.48696 0.1883 0.00010248 3.9604 0.0021555 4.1487 0.002258 544.2532321935603 69.697 0.25964 69.697 69.557 69.816 0 20 12 2 0 0 0 0.69377 1 38824 38824 3.5965 0.60125 1 837180 73135 1576 48933 49989 85053 85053 -0.05282850272851647 VSSVANRNRLD 11 Unmodified _VSSVANRNRLD_ 0 0 0 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2108764648438 2 615.8311 1229.64765 -0.45774 -0.00028189 1.8384 0.0011321 1.3807 0.00085025 615.8320537219419 32.992 0.21754 32.992 32.87 33.088 0 22 10 3 0 0 0 0.28167 1 17242 17242 18.373 1.2602 1 3115900 + 73136 21676 48934 49990 85054 85054 0.04200917163871054 VSTAANAT 8 Unmodified _VSTAANAT_ 0 0 0 ENST00000467860.1_1_1:153925101-153925347:-|nuORF ENST00000467860.1_1_1:153925101-153925347:-|nuORF ENST00000467860.1_1_1:153925101-153925347:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.6858825683594 2 367.687593 733.360633 NaN NaN NaN NaN NaN NaN NaN 17.062 1 17.063 16.563 17.563 0.0010548 0 0 0 0.97444 1 8456 8456 0 0 1 73137 13792 48935 49991 85055 85055 -0.016713119874907534 VSTILKIIM 9 Oxidation (M) _VSTILKIIM(Oxidation (M))_ VSTILKIIM(1) VSTILKIIM(78) 0 0 1 REV__nc|ENSG00000100504|P06737-2|PYGL REV__nc|ENSG00000100504|P06737-2|PYGL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3202514648438 2 517.319928 1032.6253 0.78455 0.00040587 0.085909 4.4443E-05 0.87046 0.00045031 517.3200544683903 66.88 0.43046 66.898 66.713 67.143 0.018036 57 20 5 0 0 0 0.010818 1 36673 36673 78.149 11.693 1 18960000 + 73138 18076 48936 49992 85056 85056 1833 0.1102960144194185 VSTPAAACEC 10 Unmodified _VSTPAAACEC_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.1997375488281 2 476.199153 950.383753 NaN NaN NaN NaN NaN NaN NaN 3.2242 1 3.2242 2.7242 3.7242 0 0 0 0 1.0061 1 1563 1563 0 0 1 73139 16324 48937 49993 85057 85057 -0.0934237725668936 VSTPAAACEC 10 Unmodified _VSTPAAACEC_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.1981506347656 2 476.199153 950.383753 NaN NaN NaN NaN NaN NaN NaN 7.3144 1 7.3144 6.8144 7.8144 0 0 0 0 1.0061 1 3505 3505 0 0 1 73140 16324 48937 49993 85058 85058 -0.0934237725668936 VSTPAAACEC 10 Unmodified _VSTPAAACEC_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1994018554688 2 476.199153 950.383753 NaN NaN NaN NaN NaN NaN NaN 1.1933 1 1.1727 0.67269 1.6727 -0.020623 0 0 0 1.0061 1 616 616 0 0 1 73141 16324 48937 49993 85059 85059 -0.0934237725668936 VSTPAAACEC 10 Unmodified _VSTPAAACEC_ 0 0 0 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 nc|ENSG00000162981|Q96KN4-2|LRATD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.1994934082031 2 476.199153 950.383753 NaN NaN NaN NaN NaN NaN NaN 13.178 1 13.188 12.688 13.688 0.0096512 0 0 0 1.0061 1 6497 6497 0 0 1 73142 16324 48937 49993 85060 85060 -0.0934237725668936 VSTPWHSWE 9 Unmodified _VSTPWHSWE_ 0 0 0 ENST00000462664.4_1_6:27218995-27219885:+|nuORF ENST00000462664.4_1_6:27218995-27219885:+|nuORF ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.760498046875 2 564.759081 1127.50361 0.46159 0.00026069 0.30925 0.00017465 0.77083 0.00043534 564.7592454749662 76.738 0.92123 76.788 76.4 77.321 0.05011 62 38 2 0 0 0 0.2001 1 42369 42369 23.148 1.6114 1 2743300 73143 13685 48938 49994 85061 85061 -0.05504304596252041 VSTPWHSWE 9 Unmodified _VSTPWHSWE_ 0 0 0 ENST00000462664.4_1_6:27218995-27219885:+|nuORF ENST00000462664.4_1_6:27218995-27219885:+|nuORF ENST00000462664.4_1_6:27218995-27219885:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7603149414062 2 564.759081 1127.50361 0.98211 0.00055466 0.53762 0.00030363 1.5197 0.00085828 564.758836507267 91.22 0.47705 85.044 84.939 85.416 -6.1757 46 26 2 0 0 0 0.16226 1 60356 60356 26.884 0.61551 1 9408100 73144 13685 48938 49994 85062 85062 -0.05504304596252041 VSTRVGPPNP 10 Unmodified _VSTRVGPPNP_ 0 0 0 ENSG00000164897|ENST00000297533|TMUB1 ENSG00000164897|ENST00000297533|TMUB1 ENSG00000164897|ENST00000297533|TMUB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1023.393737792969 1 1023.55817 1022.55089 0.27084 0.00027722 -1.1598 -0.0011871 -0.88895 -0.0009099 1024.5564967794296 44.934 0.15847 44.912 44.777 44.935 -0.022064 11 7 2 0 0 0 0.23634 1 24116 24116 6.7232 0 1 8108700 73145 7259 48939 49995 85063 85063 0.0405197467475773 VSTSRGSG 8 Unmodified _VSTSRGSG_ 0 0 0 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 REV__nc|ENSG00000183423|Q3SXY7-2|LRIT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.6911010742188 2 375.690667 749.366781 NaN NaN NaN NaN NaN NaN NaN 75.993 1 75.514 75.014 76.014 -0.47933 0 0 0 0.97444 1 41601 41601 0.69038 0 1 + 73146 23346 48940 49996 85064 85064 -0.01792793755942057 VSTSRRLGVCS 11 Unmodified _VSTSRRLGVCS_ 0 0 0 ENST00000469092.5_1_17:72701487-72709092:-|nuORF ENST00000469092.5_1_17:72701487-72709092:-|nuORF ENST00000469092.5_1_17:72701487-72709092:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8113403320312 2 582.811322 1163.60809 NaN NaN NaN NaN NaN NaN NaN 17.739 1 17.744 17.244 18.244 0.0050564 0 0 0 0.9435 1 8962 8962 0 0 1 73147 13825 48941 49997 85065 85065 0.03283073888860599 VSTVALLSL 9 Acetyl (Protein N-term) _(Acetyl (Protein N-term))VSTVALLSL_ 1 0 0 REV__ENST00000318950.10_1_11:9771517-9771550:+|nuORF REV__ENST00000318950.10_1_11:9771517-9771550:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7867431640625 2 472.786776 943.558998 0.93784 0.0004434 -0.30974 -0.00014644 0.6281 0.00029696 472.78662664860155 91.534 0.81664 85.358 84.956 85.773 -6.1757 90 45 3 0 0 0 0.026094 2 60528 60269;60528 57.471 6.6163 1 15129000 + 73148 25487 48942 49998 85066;85067 85067 0.0849610887153176 VSVELKSW 8 Unmodified _VSVELKSW_ 0 0 0 ENST00000367537.7_2_1:183522520-183522703:+|nuORF ENST00000367537.7_2_1:183522520-183522703:+|nuORF ENST00000367537.7_2_1:183522520-183522703:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 948.5277709960938 1 947.519659 946.512382 -0.22682 -0.00021491 2.3793 0.0022544 2.1525 0.0020395 947.5217576724604 59.348 0.36238 59.348 59.192 59.555 0 34 15 3 0 0 0 0.57045 1 33142 33142 28.487 1.6032 1 5118900 73149 12240 48943 49999 85068 85068 0.03698669040238656 VSVIISVWSF 10 Unmodified _VSVIISVWSF_ 0 0 0 nc|ENSG00000255374|P59539|TAS2R45 nc|ENSG00000255374|P59539|TAS2R45 nc|ENSG00000255374|P59539|TAS2R45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8233642578125 2 568.82115 1135.62775 NaN NaN NaN NaN NaN NaN NaN 45.584 1 45.556 45.056 46.056 -0.028011 0 0 0 0.92825 1 24495 24495 6.7232 0.99131 1 73150 16587 48944 50000 85069 85069 0.06535773171253823 VSVLIKRIL 9 Unmodified _VSVLIKRIL_ 0 0 0 REV__ENSG00000179817|ENST00000314254|MRGPRX4 REV__ENSG00000179817|ENST00000314254|MRGPRX4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1040.881103515625 1 1040.71903 1039.71175 -0.14305 -0.00014887 -3.3358 -0.0034716 -3.4788 -0.0036205 1040.716978790649 45.332 0.08849 45.007 44.958 45.046 -0.32425 10 6 2 0 0 0 0.58865 1 24191 24191 2.0598 0 1 27223000 + 73151 23119 48945 50001 85070 85070 0.1934834905880507 VSVLIKRIL 9 Unmodified _VSVLIKRIL_ 0 0 0 REV__ENSG00000179817|ENST00000314254|MRGPRX4 REV__ENSG00000179817|ENST00000314254|MRGPRX4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1040.71903 1039.71175 -0.95138 -0.00099012 0.68917 0.00071723 -0.26221 -0.00027289 1041.7247330015812 44.893 0.11181 44.893 44.847 44.959 0 -0.058057 0.0019752 NaN 2.0598 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 9772600 + 73152 23119 48945 50001 0.1934834905880507 VSVLIKRIL 9 Unmodified _VSVLIKRIL_ 0 0 0 REV__ENSG00000179817|ENST00000314254|MRGPRX4 REV__ENSG00000179817|ENST00000314254|MRGPRX4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1040.71903 1039.71175 -0.14305 -0.00014887 -3.3358 -0.0034716 -3.4788 -0.0036205 1040.716978790649 45.332 0.08849 45.007 44.958 45.046 -0.32425 0.056432 -0.0022137 NaN 2.0598 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 27223000 + 73153 23119 48945 50001 0.1934834905880507 VSVLIKRIL 9 Unmodified _VSVLIKRIL_ 0 0 0 REV__ENSG00000179817|ENST00000314254|MRGPRX4 REV__ENSG00000179817|ENST00000314254|MRGPRX4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 1 1040.71903 1039.71175 0.88406 0.00092006 -0.30497 -0.00031739 0.57909 0.00060267 1040.7206556215135 50.492 0.1306 44.953 44.854 44.985 -5.5391 0.0016249 0.00094055 NaN 2.0598 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 14971000 + 73154 23119 48945 50001 0.1934834905880507 VSVMDLPT 8 Unmodified _VSVMDLPT_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 862.435546875 1 861.438631 860.431355 0.22188 0.00019114 -0.8857 -0.00076297 -0.66381 -0.00057184 861.4381328850332 72.604 0.3164 72.604 72.433 72.749 0 20 13 2 0 0 0 0.81107 1 40487 40487 0 0 1 1250100 + 73155 23320 48946 50002 85071 85071 -0.004443549941925085 VSVPGTLG 8 Unmodified _VSVPGTLG_ 0 0 0 REV__ENST00000348579.6_1_16:67441690-67450356:-|nuORF REV__ENST00000348579.6_1_16:67441690-67450356:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2120056152344 2 365.210704 728.406855 NaN NaN NaN NaN NaN NaN NaN 46.414 1 46.414 45.914 46.914 0 0 0 0 0.97444 1 25368 25368 2.5775 0 1 + 73156 25771 48947 50003 85072 85072 0.031787529146299676 VSVQNWNI 8 Unmodified _VSVQNWNI_ 0 0 0 REV__nc|ENSG00000149636|Q9H410-2|DSN1 REV__nc|ENSG00000149636|Q9H410-2|DSN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2538757324219 2 480.250892 958.48723 0.91346 0.00043869 2.1484 0.0010318 3.0619 0.0014705 480.2523491204953 42.874 0.22948 42.874 42.737 42.966 0 21 11 3 0 0 0 0.67481 1 23260 23260 19.439 0.18201 1 2900800 + 73157 29699 48948 50004 85073 85073 0.006326142376565258 VSVRRYRLF 9 Unmodified _VSVRRYRLF_ 0 0 0 ENST00000525188.5_1_11:20409237-20415368:+|nuORF ENST00000525188.5_1_11:20409237-20415368:+|nuORF ENST00000525188.5_1_11:20409237-20415368:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3548583984375 2 598.356557 1194.69856 NaN NaN NaN NaN NaN NaN NaN 103.62 1 103.57 103.07 104.07 -0.047928 0 0 0 0.84737 1 57544 57544 1.8442 0 1 73158 14791 48949 50005 85074 85074 0.10899910999410167 VSVSQNEPSSP 11 Unmodified _VSVSQNEPSSP_ 0 0 0 REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF REV__ENST00000359866.8_1_19:17430707-17431082:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 565.7691040039062 2 565.769842 1129.52513 NaN NaN NaN NaN NaN NaN NaN 66.622 1 60.446 59.946 60.946 -6.1757 0 0 0 0.39541 1 43340 43340 28.495 1.6109 1 + 73159 25900 48950 50006 85075 85075 -0.03444964358186553 VSVSWILSL 9 Unmodified _VSVSWILSL_ 0 0 0 ENST00000396653.2_1_2:224630006-224642407:-|nuORF ENST00000396653.2_1_2:224630006-224642407:-|nuORF ENST00000396653.2_1_2:224630006-224642407:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.1893615722656 2 502.294768 1002.57498 0.60864 0.00030572 0.27159 0.00013642 0.88023 0.00044214 502.29480966248434 58.067 0.26336 58.067 57.891 58.154 0 16 10 2 0 0 0 0.209 1 32377 32377 7.2892 0 1 1025300 73160 12801 48951 50007 85076 85076 0.07379815108436105 VSVVPLAP 8 Unmodified _VSVVPLAP_ 0 0 0 REV__ENST00000471049.5_1_10:99197505-99205308:-|nuORF REV__ENST00000471049.5_1_10:99197505-99205308:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.4696044921875 2 391.244547 780.47454 0.035934 1.4059E-05 -1.963 -0.000768 -1.927 -0.00075394 391.2435809097002 79.382 0.33765 79.382 79.229 79.566 0 18 13 2 0 0 0 8.7369 1 44181 44181 0 0 1 591150 + 73161 27487 48952 50008 85077 85077 0.07552202845408829 VSWFGDTRY 9 Unmodified _VSWFGDTRY_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS AL20221201_MKP_PDAC_01 4 565.7675170898438 2 565.766906 1129.51926 NaN NaN NaN NaN NaN NaN NaN 67.002 1 60.826 60.326 61.326 -6.1757 0 0 0 0.43483 1 43617 43617 18.146 0 1 73162 7300 48953 50009 85078 85078 -0.04032018079192312 VSWLGPRPLP 10 Unmodified _VSWLGPRPLP_ 0 0 0 REV__ENST00000325875.7_1_9:86595721-86614632:+|nuORF REV__ENST00000325875.7_1_9:86595721-86614632:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3258056640625 2 561.326934 1120.63931 NaN NaN NaN NaN NaN NaN NaN 103.74 1 103.69 103.19 104.19 -0.048737 0 0 0 0.97302 1 57608 57608 3.5965 0 1 + 73163 25553 48954 50010 85079 85079 0.08382014985227215 VSWPCGAWAW 10 Unmodified _VSWPCGAWAW_ 0 0 0 ENST00000379942.4_1_X:18970652-19002067:-|nuORF ENST00000379942.4_1_X:18970652-19002067:-|nuORF ENST00000379942.4_1_X:18970652-19002067:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7622680664062 2 581.760569 1161.50659 0.7402 0.00043062 1.4905 0.0008671 2.2307 0.0012977 581.7614953251951 27.275 0.10998 27.304 27.241 27.351 0.028664 8 4 2 0 0 0 0.31022 1 14184 14184 26.884 6.43 1 5933100 73164 12582 48955 50011 85080 85080 -0.0677075274309118 VSYDLIRECL 10 Unmodified _VSYDLIRECL_ 0 0 0 REV__ENSG00000166997|ENST00000262932|CNPY4 REV__ENSG00000166997|ENST00000262932|CNPY4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.209716796875 3 404.209396 1209.60636 -0.40811 -0.00016496 1.026 0.0004147 0.61786 0.00024974 404.21001346249625 23.989 0.55057 23.989 23.623 24.174 0 83 27 5 0 0 0 0.67033 1 12188 12188 3.3196 0 1 8930000 + 73165 22172 48956 50012 85081 85081 0.009940200802248 VSYENINKNDY 11 Unmodified _VSYENINKNDY_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.5458068847656 3 453.545613 1357.61501 -0.15578 -7.0655E-05 0.72748 0.00032995 0.5717 0.00025929 453.5458024429707 18.545 0.09787 18.545 18.501 18.599 0 13 7 2 0 0 0 0.70069 1 9222 9222 1.9275 1.3007 1 1086300 73166 3124 48957 50013 85082 85082 -0.0494933474960817 VSYFISLF 8 Unmodified _VSYFISLF_ 0 0 0 REV__ENSG00000168329|ENST00000399220|CX3CR1 REV__ENSG00000168329|ENST00000399220|CX3CR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2624206542969 2 488.262936 974.51132 NaN NaN NaN NaN NaN NaN NaN 76.715 1 76.715 76.215 77.215 0 0 0 0 0.97444 1 42648 42648 5.2307 0 1 + 73167 22305 48958 50014 85083 85083 0.02304454671343592 VSYGFLTNH 9 Unmodified _VSYGFLTNH_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.25537109375 2 519.256174 1036.49779 0.18226 9.4641E-05 -0.37301 -0.00019369 -0.19075 -9.9048E-05 519.255719482527 58.472 0.27106 57.981 57.861 58.133 -0.49079 27 12 3 0 0 0 0.47846 1 31795 31795 8.7454 8.7454 1 3886200 + 73168 18960 48959 50015 85084 85084 -0.01899403107904618 VSYHRRCGSLS 11 Unmodified _VSYHRRCGSLS_ 0 0 0 REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2 REV__nc|ENSG00000155886|Q9UI40-2|SLC24A2 MSMS AL20221201_MKP_PDAC_01 4 632.812255859375 2 632.814396 1263.61424 NaN NaN NaN NaN NaN NaN NaN 39.877 1 35.348 34.848 35.848 -4.5294 0 0 0 0.86932 1 23730 23730 8.7454 0.58988 1 + 73169 21296 48960 50016 85085 85085 -0.00702407879657585 VSYKLVSEPQ 10 Unmodified _VSYKLVSEPQ_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8759765625 3 383.876523 1148.60774 NaN NaN NaN NaN NaN NaN NaN 18.919 1 18.942 18.442 19.442 0.023106 0 0 0 0.88176 1 9517 9517 5.0475 0 1 73170 10553 48961 50017 85086 85086 0.039379774406370416 VSYRIQDSPV 10 Unmodified _VSYRIQDSPV_ 0 0 0 ENSG00000113555|ENST00000231484|PCDH12 ENSG00000113555|ENST00000231484|PCDH12 ENSG00000113555|ENST00000231484|PCDH12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.7703247070312 2 582.306395 1162.59824 0.54579 0.00031782 -1.2897 -0.00075098 -0.74387 -0.00043316 582.3058544334388 43.912 0.43075 39.148 38.95 39.381 -4.7648 65 27 3 0 0 0 0.23566 1 26669 26669 1.6526 0 1 50524000 73171 2974 48962 50018 85087 85087 0.023442091550805344 VSYSLPSHDS 10 Unmodified _VSYSLPSHDS_ 0 0 0 REV__ENST00000468778.5_1_2:74649977-74650720:+|nuORF REV__ENST00000468778.5_1_2:74649977-74650720:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2542724609375 2 546.253828 1090.4931 0.24723 0.00013505 -0.031214 -1.7051E-05 0.21601 0.000118 546.2537536773092 26.719 0.50503 26.747 26.59 27.095 0.028664 54 22 3 0 0 0 0.62068 1 13832 13832 10.074 2.1638 1 63680000 + 73172 27459 48963 50019 85088 85088 -0.048523320413323745 VTAAPGPKP 9 Unmodified _VTAAPGPKP_ 0 0 0 ENSG00000244005|ENST00000374092|NFS1;nc|ENSG00000244005|Q9Y697-3|NFS1;ENST00000421540.1_1_20:34280185-34287249:-|nuORF ENSG00000244005|ENST00000374092|NFS1 ENSG00000244005|ENST00000374092|NFS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.4822998046875 1 837.482879 836.475603 -0.16435 -0.00013764 0.045055 3.7733E-05 -0.1193 -9.9908E-05 837.4829226791165 59.665 0.24458 59.175 59.048 59.293 -0.49079 21 11 2 0 0 0 0.070838 1 32529 32529 39.957 7.6518 1 2329200 73173 10722 48964 50020 85089 85089 0.05082417214327961 VTALCPSL 8 Unmodified _VTALCPSL_ 0 0 0 nc|ENSG00000105278|Q9UPR6-2|ZFR2 nc|ENSG00000105278|Q9UPR6-2|ZFR2 nc|ENSG00000105278|Q9UPR6-2|ZFR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.2121887207031 2 402.220214 802.425876 NaN NaN NaN NaN NaN NaN NaN 43.127 1 43.112 42.612 43.612 -0.015667 0 0 0 0.97444 1 23109 23109 5.2307 0 1 73174 16102 48965 50021 85090 85090 0.016759662140202636 VTALSVPTI 9 Unmodified _VTALSVPTI_ 0 0 0 ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant;nc|ENSG00000102053|Q5HYM0-2|ZC3H12B;ENSG00000102053|ENST00000338957|ZC3H12B ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant ZC3H12B|p.V574Gfs*7|1|0.2|ENSG00000102053|chrX:65502412-65502413|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 902.544677734375 1 900.54006 899.532783 -0.14442 -0.00013006 -1.7236 -0.0015522 -1.868 -0.0016822 900.5405003821351 75.959 0.50741 75.482 75.235 75.742 -0.47714 45 21 3 0 0 0 0.30562 1 41593 41593 16.942 0 1 2566900 73175 2014 48966 50022 85091 85091 0.07899839700041866 VTANDSDPEL 10 Unmodified _VTANDSDPEL_ 0 0 0 CDAN1|p.K341N|1|0.14|ENSG00000140326|chr15:42735295-42735295|C/A|missense_variant CDAN1|p.K341N|1|0.14|ENSG00000140326|chr15:42735295-42735295|C/A|missense_variant CDAN1|p.K341N|1|0.14|ENSG00000140326|chr15:42735295-42735295|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1669006347656 3 354.164621 1059.47203 0.46637 0.00016517 1.799 0.00063713 2.2653 0.0008023 354.1665277654727 85.439 0.75462 84.938 84.715 85.469 -0.5015 242 54 6 0 0 0 0.69377 1 46871 46871 1.7423 0 1 42254000 73176 54 48967 50023 85092 85092 -0.05532342140850233 VTAPGASFF 9 Unmodified _VTAPGASFF_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 897.4556274414062 1 896.451245 895.443968 -0.045058 -4.0393E-05 0.75827 0.00067975 0.71321 0.00063936 896.4519778505186 62.067 0.34534 62.067 61.821 62.167 0 24 14 2 0 0 0 0.54444 1 34648 34648 4.756 0 1 1762500 + 73177 18330 48968 50024 85093 85093 -0.007935755396147215 VTARRLLGG 9 Unmodified _VTARRLLGG_ 0 0 0 ENSG00000184117|ENST00000216121|NIPSNAP1;ENST00000496944.1_1_22:29966149-29977071:-|nuORF ENSG00000184117|ENST00000216121|NIPSNAP1 ENSG00000184117|ENST00000216121|NIPSNAP1 MSMS AL20221201_MKP_PDAC_01 4 471.79638671875 2 471.795801 941.577048 NaN NaN NaN NaN NaN NaN NaN 8.7085 1 6.2265 5.7265 6.7265 -2.482 0 0 0 0.8622 1 4396 4396 0 0 1 73178 9222 48969 50025 85094 85094 0.10392288636921876 VTARRLPTI 9 Unmodified _VTARRLPTI_ 0 0 0 REV__nc|ENSG00000009307|O75534-2|CSDE1 REV__nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.8242797851562 2 513.824558 1025.63456 0.17053 8.7622E-05 0.22368 0.00011493 0.3942 0.00020255 513.8246561625758 32.908 0.24451 32.938 32.822 33.067 0.029743 25 10 3 0 0 0 0.2143 1 17271 17271 21.747 2.4897 1 6024500 + 73179 17031 48970 50026 85095 85095 0.12277130842471706 VTARVIGG 8 Unmodified _VTARVIGG_ 0 0 0 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 ENSG00000148843|ENST00000369797|PDCD11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.7379150390625 2 386.73742 771.460287 -0.66955 -0.00025894 1.8571 0.0007182 1.1875 0.00045926 386.7381369414776 103.01 0.23493 102.97 102.86 103.1 -0.047928 18 9 3 0 0 0 0.81107 1 57212 57212 0 0 1 26627000 73180 5970 48971 50027 85096 85096 0.0654155041715967 VTATHTTGPI 10 Unmodified _VTATHTTGPI_ 0 0 0 REV__ENSG00000117983|ENST00000529681|MUC5B REV__ENSG00000117983|ENST00000529681|MUC5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2673034667969 2 499.269281 996.52401 0.53999 0.0002696 -0.80406 -0.00040144 -0.26406 -0.00013184 499.26809115012594 73.453 0.26572 72.977 72.826 73.092 -0.47588 18 11 2 0 0 0 0.52888 1 40208 40208 14.838 0 1 681120 + 73181 19129 48972 50028 85097 85097 0.02560866063549838 VTATLVDP 8 Unmodified _VTATLVDP_ 0 0 0 REV__nc|ENSG00000055955|Q14624-4|ITIH4 REV__nc|ENSG00000055955|Q14624-4|ITIH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 815.4515380859375 1 815.450911 814.443634 0.17567 0.00014325 1.5206 0.00124 1.6963 0.0013833 815.4517664553107 67.348 0.23307 67.348 67.226 67.459 0 16 9 2 0 0 0 0.44122 1 37525 37525 40.449 0 1 582780 + 73182 17292 48973 50029 85098 85098 0.02899004740527289 VTAWYIGF 8 Unmodified _VTAWYIGF_ 0 0 0 nc|ENSG00000075043|O43526-6|KCNQ2;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2 nc|ENSG00000075043|O43526-6|KCNQ2 nc|ENSG00000075043|O43526-6|KCNQ2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.268310546875 2 478.747453 955.480354 0.98468 0.00047141 -0.93623 -0.00044822 0.048448 2.3194E-05 478.74714994946584 49.946 0.3345 44.407 44.299 44.633 -5.5391 36 21 2 0 0 0 8.7369 1 31252 31252 9.3474 0 1 17074000 73183 1142 48974 50030 85099 85099 0.0008330135708547459 VTCRACVLL 9 Unmodified _VTCRACVLL_ 0 0 0 REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2681274414062 2 489.267173 976.519793 0.31275 0.00015302 2.2331 0.0010926 2.5458 0.0012456 489.2686481422431 69.036 0.28969 69.036 68.888 69.177 0 21 12 2 0 0 0 0.32871 1 38458 38458 15.847 1.9411 1 788030 + 73184 28573 48975 50031 85100 85100 0.030593620446438763 VTCRACVLL 9 Unmodified _VTCRACVLL_ 0 0 0 REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF REV__ENST00000539966.5_1_13:99104488-99104563:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 489.267173 976.519793 0.087633 4.2876E-05 3.0024 0.001469 3.0901 0.0015119 489.2683776385176 69.544 0.28123 69.065 68.9 69.182 -0.47903 0.014428 0.00039793 NaN 15.847 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 426110 + 73185 28573 48975 50031 0.030593620446438763 VTDAIMHLKE 10 Unmodified _VTDAIMHLKE_ 0 0 0 REV__nc|ENSG00000136237|Q92565|RAPGEF5 REV__nc|ENSG00000136237|Q92565|RAPGEF5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.2073974609375 3 386.205875 1155.59579 NaN NaN NaN NaN NaN NaN NaN 53.183 1 52.732 52.232 53.232 -0.45173 0 0 0 0.95736 1 28768 28768 2.8433 0.10809 1 + 73186 20148 48976 50032 85101 85101 0.024220374257765798 VTDALEIFV 9 Unmodified _VTDALEIFV_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2777709960938 2 503.776408 1005.53826 1.1703 0.00058957 0.25464 0.00012828 1.4249 0.00071785 503.7763332780879 89.654 0.44714 83.478 83.255 83.702 -6.1757 42 24 3 0 0 0 0.06187 1 59182 59182 42.095 0 1 15480000 + 73187 24090 48977 50033 85102 85102 0.03571518491855841 VTDALEIFV 9 Unmodified _VTDALEIFV_ 0 0 0 REV__ENSG00000198883|ENST00000535214|PNMA5 REV__ENSG00000198883|ENST00000535214|PNMA5 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 503.776408 1005.53826 1.1703 0.00058957 0.25464 0.00012828 1.4249 0.00071785 503.7763332780879 89.654 0.44714 83.478 83.255 83.702 -6.1757 -0.068491 0.00051849 NaN 42.095 42 24 3 NaN NaN NaN NaN 0 NaN NaN 0 15480000 + 73188 24090 48977 50033 0.03571518491855841 VTDEDEGPAE 10 Unmodified _VTDEDEGPAE_ 0 0 0 ENSG00000196642|ENST00000311502|RABL6;nc|ENSG00000196642|Q3YEC7-2|RABL6 ENSG00000196642|ENST00000311502|RABL6 ENSG00000196642|ENST00000311502|RABL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2178955078125 2 531.217108 1060.41966 0.67309 0.00035756 -0.33041 -0.00017552 0.34268 0.00018203 531.2171963275989 53.739 0.58565 53.739 53.525 54.111 0 81 27 5 0 0 0 0.64628 1 29873 29873 8.7454 0.83525 1 114510000 73189 9852 48978 50034 85103 85103 -0.10812925274467489 VTDEPVYI 8 Unmodified _VTDEPVYI_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 935.4718017578125 1 935.47204 934.464763 0.53004 0.00049584 -1.1494 -0.0010752 -0.61936 -0.00057939 935.4708989492296 53.456 0.17262 53.456 53.353 53.525 0 11 7 2 0 0 0 0.24071 1 29615 29615 63.563 16.642 1 1203200 73190 7074 48979 50035 85104 85104 -0.005090299506036899 VTDGARAW 8 Unmodified _VTDGARAW_ 0 0 0 ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60885298-60889553:-|nuORF ENSG00000130702|ENST00000252999|LAMA5 ENSG00000130702|ENST00000252999|LAMA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2225341796875 2 438.222134 874.429715 -0.58568 -0.00025666 0.45264 0.00019836 -0.13304 -5.8299E-05 438.2222442324234 17.534 0.38906 17.548 17.25 17.639 0.013865 157 94 2 0 0 0 0.79783 1 8565 8565 7.9102 0 1 1076500 73191 4239 48980 50036 85105 85105 -0.012522279679046733 VTDGKEVLL 9 Unmodified _VTDGKEVLL_ 0 0 0 ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;ENSG00000115275|ENST00000448666|MOGS;ENST00000489655.1_1_2:74689957-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF ENST00000462189.1_1_2:74688404-74690534:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.7295837402344 2 487.281857 972.549162 0.70513 0.0003436 0.50674 0.00024693 1.2119 0.00059052 487.28181274750403 45.616 0.41447 40.661 40.464 40.878 -4.9549 40 27 2 0 0 0 0.1318 1 27962 27962 28.495 5.7582 1 18388000 73192 3104 48981 50037 85106 85106 0.06178920866148019 VTDPIAELSL 10 Unmodified _VTDPIAELSL_ 0 0 0 REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13 REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13 MSMS AL20221201_MKP_PDAC_01 4 353.1968078613281 3 353.197374 1056.57029 NaN NaN NaN NaN NaN NaN NaN 79.641 1 73.466 72.966 73.966 -6.1757 0 0 0 0.78689 1 52206 52206 12.873 3.8964 1 + 73193 18879 48982 50038 85107 85107 0.0442688617499698 VTDSPVLL 8 Unmodified _VTDSPVLL_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;ENST00000489048.1_1_2:152547165-152552100:-|nuORF nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 843.48095703125 1 843.482211 842.474934 -0.36461 -0.00030754 -0.32728 -0.00027605 -0.69189 -0.00058359 843.4821627999673 71.419 0.28217 71.419 71.266 71.548 0 22 14 2 0 0 0 0.19792 1 39749 39749 70.716 0 1 1140900 73194 9115 48983 50039 85108 85108 0.047395777746373824 VTDTQILHDSR 11 Unmodified _VTDTQILHDSR_ 0 0 0 REV__ENSG00000123595|ENST00000464506|RAB9A REV__ENSG00000123595|ENST00000464506|RAB9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.8909301757812 3 428.889603 1283.64698 NaN NaN NaN NaN NaN NaN NaN 37.752 1 37.481 36.981 37.981 -0.27133 0 0 0 0.89305 1 19848 19848 3.8459 0 1 + 73195 19396 48984 50040 85109 85109 0.016500777241844844 VTDVGVHL 8 Unmodified _VTDVGVHL_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2340698242188 2 420.23471 838.454868 -0.34998 -0.00014707 0.43495 0.00018278 0.084969 3.5707E-05 420.23496344331846 41.781 0.23607 41.781 41.645 41.881 0 21 11 3 0 0 0 0.13235 1 22566 22566 90.836 19.971 1 5974100 73196 4855 48985 50041 85110 85110 0.029178268346640834 VTDVGVHL 8 Unmodified _VTDVGVHL_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MSMS AL20221201_MKP_PDAC_01 4 420.2351684570312 2 420.23471 838.454868 NaN NaN NaN NaN NaN NaN NaN 47.165 1 42.084 41.584 42.584 -5.0805 0 0 0 0.50394 1 29245 29245 40.449 8.3316 1 73197 4855 48985 50041 85111 85111 0.029178268346640834 VTDWHGSN 8 Unmodified _VTDWHGSN_ 0 0 0 REV__ENST00000379752.5_1_1:157030233-157030518:-|nuORF REV__ENST00000379752.5_1_1:157030233-157030518:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.2019653320312 2 458.201399 914.388245 NaN NaN NaN NaN NaN NaN NaN 75.78 1 75.78 75.28 76.28 0 0 0 0 0.97444 1 42146 42146 2.5775 0 1 + 73198 19354 48986 50042 85112 85112 -0.07237408727223738 VTDYTDWYP 9 Unmodified _VTDYTDWYP_ 0 0 0 ENSG00000011105|ENST00000011898|TSPAN9 ENSG00000011105|ENST00000011898|TSPAN9 ENSG00000011105|ENST00000011898|TSPAN9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2529296875 2 580.250754 1158.48696 NaN NaN NaN NaN NaN NaN NaN 80.971 1 80.971 80.471 81.471 0 0 0 0 0.85359 1 44951 44951 0.52476 0 1 73199 433 48987 50043 85113 85113 -0.08594850272857002 VTEAVLKFL 9 Unmodified _VTEAVLKFL_ 0 0 0 nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1;nc|ENSG00000138698|P52306-6|RAP1GDS1;nc|ENSG00000138698|P52306-2|RAP1GDS1;nc|ENSG00000138698|P52306-3|RAP1GDS1 nc|ENSG00000138698|P52306-4|RAP1GDS1 nc|ENSG00000138698|P52306-4|RAP1GDS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.310791015625 2 510.310418 1018.60628 1.3727 0.00070052 -0.82514 -0.00042108 0.54758 0.00027944 510.309993610503 98.222 0.16547 92.047 91.968 92.134 -6.1757 22 10 3 0 0 0 0.015445 1 65117 65117 68.081 14.248 1 32261000 73200 5090 48988 50044 85114 85114 0.09772388142539512 VTECEFCCF 9 Unmodified _VTECEFCCF_ 0 0 0 REV__ENSG00000163637|ENST00000638394|PRICKLE2 REV__ENSG00000163637|ENST00000638394|PRICKLE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.6950073242188 2 540.695389 1079.37622 0.19777 0.00010693 0.66286 0.00035841 0.86063 0.00046534 540.695652686318 61.674 0.38758 61.674 61.476 61.864 0 31 17 2 0 0 0 0.54444 1 34468 34468 4.756 2.6963 1 3110800 + 73201 21794 48989 50045 85115 85115 -0.16028852848603492 VTEDILKLY 9 Unmodified _VTEDILKLY_ 0 0 0 ENSG00000255151|ENST00000527482|GLYATL1B ENSG00000255151|ENST00000527482|GLYATL1B ENSG00000255151|ENST00000527482|GLYATL1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.3113403320312 2 547.310615 1092.60668 0.37321 0.00020426 0.47126 0.00025792 0.84447 0.00046219 547.3105296261992 86.236 0.38995 85.733 85.493 85.883 -0.50318 30 15 2 0 0 0 0.41742 1 47120 47120 11.64 0 1 863820 73202 10786 48990 50046 85116 85116 0.06407763071729278 VTEEDLDYRTE 11 Unmodified _VTEEDLDYRTE_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF ENSG00000065883|ENST00000181839|CDK13 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.309814453125 2 685.309529 1368.6045 -0.29391 -0.00020142 0.83616 0.00057303 0.54225 0.00037161 685.3101589885732 33.012 0.91403 32.853 32.57 33.484 -0.15918 114 37 4 0 0 0 0.68427 1 17433 17433 5.7319 0.43497 1 13135000 73203 918 48991 50047 85117 85117 -0.06505362194729969 VTEEFQQRDI 10 Unmodified _VTEEFQQRDI_ 0 0 0 REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7 REV__nc|ENSG00000147533|Q7Z5G4-3|GOLGA7 MSMS AL20221201_MKP_PDAC_01 4 632.8141479492188 2 632.812042 1263.60953 NaN NaN NaN NaN NaN NaN NaN 75.812 1 69.636 69.136 70.136 -6.1757 0 0 0 0.71157 1 49588 49588 16.149 3.1066 1 + 73204 20897 48992 50048 85118 85118 -0.011730135414154574 VTEEHMPFWQF 11 Unmodified _VTEEHMPFWQF_ 0 0 0 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 ENSG00000087502|ENST00000360150|ERGIC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2209777832031 3 484.220184 1449.63872 0.76849 0.00037212 1.877 0.00090889 2.6455 0.001281 484.2212264026026 47.457 0.26462 47.104 46.919 47.183 -0.3526 20 12 2 0 0 0 0.73115 1 25449 25449 0.45452 0 1 4024400 73205 1472 48993 50049 85119 85119 -0.06811192516806841 VTEGFIQSI 9 Unmodified _VTEGFIQSI_ 0 0 0 ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B ENSG00000066739|ENST00000359933|ATG2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2662048339844 2 497.266207 992.517862 NaN NaN NaN NaN NaN NaN NaN 86.384 1 86.384 85.884 86.884 0 0 0 0 0.7453 1 47850 47850 7.9102 0 1 73206 943 48994 50050 85120 85120 0.02130347832053303 VTEGVIVPE 9 Unmodified _VTEGVIVPE_ 0 0 0 nc|ENSG00000147180|Q9Y462|ZNF711;nc|ENSG00000147180|Q9Y462-2|ZNF711;ENSG00000147180|ENST00000674551|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 nc|ENSG00000147180|Q9Y462|ZNF711 MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.5043334960938 1 942.514239 941.506963 -0.30057 -0.00028329 -2.5353 -0.0023895 -2.8359 -0.0026728 942.5118958868061 77.052 0.39469 70.876 70.739 71.134 -6.1757 38 22 2 0 0 0 0.042911 1 50335 50335 48.346 6.2513 1 25865000 73207 5832 48995 50051 85121 85121 0.033869454577597935 VTEHVQLLQVI 11 Unmodified _VTEHVQLLQVI_ 0 0 0 ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG ENSG00000132170|ENST00000651735|PPARG ENSG00000132170|ENST00000651735|PPARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9196166992188 3 426.918722 1277.73434 1.413 0.00060325 0.66525 0.00028401 2.0783 0.00088726 426.9190477096186 50.279 0.40656 50.231 50.027 50.433 -0.048828 70 19 5 0 0 0 0.58245 1 27252 27252 12.228 0 1 9364000 73208 4375 48996 50052 85122 85122 0.10657903665764934 VTEKAYTL 8 Unmodified _VTEKAYTL_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.755615234375 2 462.755475 923.496398 NaN NaN NaN NaN NaN NaN NaN 67.416 1 67.416 66.916 67.916 0 0 0 0 0.95201 1 37593 37593 10.183 0 1 + 73209 17684 48997 50053 85123 85123 0.031589628033202644 VTEKAYTL 8 Unmodified _VTEKAYTL_ 0 0 0 REV__ENSG00000081148|ENST00000193391|IMPG2 REV__ENSG00000081148|ENST00000193391|IMPG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7560729980469 2 462.755475 923.496398 NaN NaN NaN NaN NaN NaN NaN 67.882 1 67.399 66.899 67.899 -0.48218 0 0 0 0.93066 1 37091 37091 14.582 0 1 + 73210 17684 48997 50053 85124 85124 0.031589628033202644 VTEKNGWSFT 10 Unmodified _VTEKNGWSFT_ 0 0 0 nc|ENSG00000071909|Q8WXR4-5|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF nc|ENSG00000071909|Q8WXR4-5|MYO3B nc|ENSG00000071909|Q8WXR4-5|MYO3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7855834960938 2 584.785296 1167.55604 1.04 0.0006082 -0.12498 -7.3085E-05 0.91506 0.00053511 584.7851108943327 71.787 0.53329 65.611 65.345 65.878 -6.1757 98 29 4 0 0 0 0.56348 1 46957 46957 13.042 0 1 911550000 73211 13364 48998 50054 85125 85125 -0.021037662532989998 VTEKPWKPAG 10 Unmodified _VTEKPWKPAG_ 0 0 0 REV__nc|ENSG00000198910|P32004-3|L1CAM REV__nc|ENSG00000198910|P32004-3|L1CAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5420532226562 3 371.541475 1111.60259 1.2676 0.00047095 0.70462 0.00026179 1.9722 0.00073275 371.54169381230855 46.735 0.36567 46.702 46.572 46.938 -0.033417 33 17 2 0 0 0 0.71177 1 25148 25148 1.5923 0.26275 1 23205000 + 73212 29900 48999 50055 85126 85126 0.05125718368640264 VTEKPWKPAG 10 Unmodified _VTEKPWKPAG_ 0 0 0 REV__nc|ENSG00000198910|P32004-3|L1CAM REV__nc|ENSG00000198910|P32004-3|L1CAM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 371.541475 1111.60259 0.14853 5.5186E-05 1.2067 0.00044835 1.3553 0.00050354 371.5418451770599 46.773 0.33657 46.773 46.585 46.922 0 0.035748 0.00038227 NaN 1.5923 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 2426300 + 73213 29900 48999 50055 0.05125718368640264 VTEKPWKPAG 10 Unmodified _VTEKPWKPAG_ 0 0 0 REV__nc|ENSG00000198910|P32004-3|L1CAM REV__nc|ENSG00000198910|P32004-3|L1CAM MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 371.541475 1111.60259 1.2676 0.00047095 0.70462 0.00026179 1.9722 0.00073275 371.54169381230855 46.735 0.36567 46.702 46.572 46.938 -0.033417 -0.035748 -0.0001774 NaN 1.5923 33 17 2 NaN NaN NaN NaN 0 NaN NaN 0 23205000 + 73214 29900 48999 50055 0.05125718368640264 VTERGCALTF 10 Unmodified _VTERGCALTF_ 0 0 0 ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2;ENST00000462869.1_1_3:113795697-113801401:+|nuORF;ENST00000483272.1_1_3:113798714-113804748:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 ENSG00000151576|ENST00000281273|QTRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7740478515625 2 548.776416 1095.53828 0.26507 0.00014546 -1.8697 -0.001026 -1.6046 -0.00088057 548.7751739260319 59.197 0.32009 58.707 58.535 58.855 -0.49079 43 14 4 0 0 0 0.13391 2 32171 32171;32271 41.84 3.8656 1 3934000 73215 6125 49000 50056 85127;85128 85127 -0.005668047798280895 VTETQQFLL 9 Unmodified _VTETQQFLL_ 0 0 0 REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF REV__ENST00000550479.1_1_12:104332030-104335334:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.5994262695312 2 539.792589 1077.57063 0.83794 0.00045232 0.5883 0.00031756 1.4262 0.00076988 539.7924878136535 81.723 0.72179 75.547 75.21 75.932 -6.1757 95 40 3 0 0 0 0.30562 1 53916 53916 16.942 4.4107 1 65961000 + 73216 28703 49001 50057 85129 85129 0.03494305894855643 VTFDRGLHL 9 Unmodified _VTFDRGLHL_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1971130371094 3 353.197819 1056.57163 0.46018 0.00016253 -0.4934 -0.00017427 -0.033221 -1.1734E-05 353.19752182135045 57.351 0.23438 56.861 56.729 56.964 -0.48974 23 10 3 0 0 0 0.27545 1 31181 31181 18.373 0 1 2019800 + 73217 29517 49002 50058 85130 85130 0.04560565054430299 VTFDRGLHL 9 Unmodified _VTFDRGLHL_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1973571777344 3 353.197819 1056.57163 0.60209 0.00021266 -0.42807 -0.00015119 0.17402 6.1463E-05 353.19751560992506 56.99 0.19494 56.921 56.82 57.015 -0.068741 17 9 2 0 0 0 0.13231 1 31015 31015 29.841 0 1 3239000 + 73218 29517 49002 50058 85131 85131 0.04560565054430299 VTFDRGLHL 9 Unmodified _VTFDRGLHL_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 353.197819 1056.57163 0.46018 0.00016253 -0.4934 -0.00017427 -0.033221 -1.1734E-05 353.19752182135045 57.351 0.23438 56.861 56.729 56.964 -0.48974 -0.030116 -3.7637E-05 NaN 29.841 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2019800 + 73219 29517 49002 50058 0.04560565054430299 VTFDRGLHL 9 Unmodified _VTFDRGLHL_ 0 0 0 REV__nc|ENSG00000083444|Q02809-2|PLOD1 REV__nc|ENSG00000083444|Q02809-2|PLOD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 353.197819 1056.57163 0.60209 0.00021266 -0.42807 -0.00015119 0.17402 6.1463E-05 353.19751560992506 56.99 0.19494 56.921 56.82 57.015 -0.068741 0.030116 3.1586E-05 NaN 29.841 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3239000 + 73220 29517 49002 50058 0.04560565054430299 VTFHSEGY 8 Unmodified _VTFHSEGY_ 0 0 0 REV__nc|ENSG00000102900|Q8N1F7-2|NUP93 REV__nc|ENSG00000102900|Q8N1F7-2|NUP93 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.2153930664062 2 470.213975 938.413397 NaN NaN NaN NaN NaN NaN NaN 43.308 1 43.308 42.808 43.808 0 0 0 0 0.95201 1 23513 23513 10.183 0 1 + 73221 18265 49003 50059 85132 85132 -0.058273539246670225 VTFKLTMPSP 10 Unmodified _VTFKLTMPSP_ 0 0 0 ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000475707.5_1_3:15045421-15079667:+|nuORF ENSG00000177463|ENST00000425241|NR2C2 ENSG00000177463|ENST00000425241|NR2C2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2869262695312 2 560.807185 1119.59982 0.64785 0.00036332 -2.2703 -0.0012732 -1.6224 -0.00090988 561.3068836250112 79.536 0.17754 79.591 79.495 79.672 0.05497 10 6 2 0 0 0 0.23412 1 43899 43899 5.7319 1.4026 1 1173400 73222 8685 49004 50060 85133 85133 0.04480126919497707 VTFPEINLM 9 Unmodified _VTFPEINLM_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2786254882812 2 532.27826 1062.54197 0.36164 0.00019249 1.0635 0.00056609 1.4252 0.00075859 532.2788494967643 92.237 0.22762 91.756 91.608 91.836 -0.48092 15 9 2 0 0 0 0.54444 1 50378 50378 4.756 0.42677 1 317010 73223 4286 49005 50061 85134 85134 0.01319864994047748 VTFPVRQPR 9 Unmodified _VTFPVRQPR_ 0 0 0 ENSG00000102007|ENST00000376327|PLP2 ENSG00000102007|ENST00000376327|PLP2 ENSG00000102007|ENST00000376327|PLP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2178649902344 3 367.217214 1098.62981 1.6046 0.00058924 -0.69219 -0.00025418 0.91241 0.00033505 367.21697628665896 34.986 0.35851 30.891 30.7 31.058 -4.0951 34 20 2 0 0 0 0.11005 2 20301 20178;20301 32.037 15.622 1 11409000 73224 2009 49006 50062 85135;85136 85136 0.08444246699696123 VTFWKACERF 10 Unmodified _VTFWKACERF_ 0 0 0 ENSG00000169220|ENST00000408923|RGS14 ENSG00000169220|ENST00000408923|RGS14 ENSG00000169220|ENST00000408923|RGS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.550537109375 3 429.549864 1285.62776 0.88635 0.00038073 0.35066 0.00015063 1.237 0.00053136 429.550088155918 45.861 0.28874 40.906 40.729 41.018 -4.9549 31 18 2 0 0 0 0.65023 1 28225 28225 8.4443 1.3426 1 11257000 73225 7849 49007 50063 85137 85137 -0.0036255010043078073 VTFYWTLK 8 Unmodified _VTFYWTLK_ 0 0 0 ENST00000528727.5_1_11:99426939-100095567:+|nuORF;nc|ENSG00000149972|O94779-4|CNTN5;nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5 ENST00000528727.5_1_11:99426939-100095567:+|nuORF ENST00000528727.5_1_11:99426939-100095567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1058.73974609375 1 1057.57169 1056.56442 0.2422 0.00025614 3.4594 0.0036585 3.7016 0.0039147 1058.5761665550508 31.031 0.19596 30.928 30.743 30.939 -0.10269 9 7 2 0 0 0 0.80232 1 16082 16082 5.2307 0 1 4476600 73226 6047 49008 50064 85138 85138 0.038398324539684836 VTGAAVVF 8 Unmodified _VTGAAVVF_ 0 0 0 REV__ENST00000470551.1_1_20:62562485-62562518:+|nuORF REV__ENST00000470551.1_1_20:62562485-62562518:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.2202453613281 2 382.221072 762.42759 NaN NaN NaN NaN NaN NaN NaN 64.455 1 64.455 63.955 64.955 0 0 0 0 0.97444 1 35945 35945 2.8892 0 1 + 73227 27480 49009 50065 85139 85139 0.03687343294279799 VTGATGVF 8 Unmodified _VTGATGVF_ 0 0 0 REV__ENSG00000180543|ENST00000322128|TSPYL5 REV__ENSG00000180543|ENST00000322128|TSPYL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2149047851562 2 376.202879 750.391205 NaN NaN NaN NaN NaN NaN NaN 54.04 1 54.04 53.54 54.54 0 0 0 0 0.59893 1 29983 29983 34.187 0 1 + 73228 23156 49010 50066 85140 85140 0.006024663975722433 VTGATGVF 8 Unmodified _VTGATGVF_ 0 0 0 REV__ENSG00000180543|ENST00000322128|TSPYL5 REV__ENSG00000180543|ENST00000322128|TSPYL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2020874023438 2 376.202879 750.391205 NaN NaN NaN NaN NaN NaN NaN 54.098 1 54.098 53.598 54.598 0 0 0 0 0.59893 1 30019 30019 34.187 7.8461 1 + 73229 23156 49010 50066 85141 85141 0.006024663975722433 VTGDEYSVE 9 Unmodified _VTGDEYSVE_ 0 0 0 ENST00000398869.2_1_22:50151619-50152259:-|nuORF ENST00000398869.2_1_22:50151619-50152259:-|nuORF ENST00000398869.2_1_22:50151619-50152259:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7183227539062 2 499.719287 997.424021 0.19666 9.8274E-05 -0.90985 -0.00045467 -0.7132 -0.0003564 499.71875421908527 78.951 0.95311 78.465 78.059 79.012 -0.48596 72 39 2 0 0 0 0.2001 1 43180 43180 23.148 9.6405 1 1197500 73230 12858 49011 50067 85142 85142 -0.07479416060891708 VTGEPHTLL 9 Unmodified _VTGEPHTLL_ 0 0 0 ENST00000498402.2_1_1:46751029-46751089:-|nuORF ENST00000498402.2_1_1:46751029-46751089:-|nuORF ENST00000498402.2_1_1:46751029-46751089:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7693176269531 2 483.766374 965.518196 0.65536 0.00031704 0.45966 0.00022237 1.115 0.00053941 483.7665854503126 57.26 0.39671 57.26 56.974 57.371 0 36 17 3 0 0 0 0.16226 1 31911 31911 26.884 5.137 1 9908900 73231 14423 49012 50068 85143 85143 0.03405767551907957 VTGEYLYNFTY 11 Unmodified _VTGEYLYNFTY_ 0 0 0 ENSG00000145934|ENST00000518659|TENM2;nc|ENSG00000145934|Q9NT68-2|TENM2 ENSG00000145934|ENST00000518659|TENM2 ENSG00000145934|ENST00000518659|TENM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.2138977050781 3 457.215204 1368.62378 0.31966 0.00014615 -2.2831 -0.0010439 -1.9634 -0.00089772 457.21385880647 53.457 0.26962 53.006 52.878 53.148 -0.45173 25 12 4 0 0 0 0.69316 1 28914 28914 2.2527 0 1 2062600 73232 5741 49013 50069 85144 85144 -0.0457836111315828 VTGHFPRRPL 10 Unmodified _VTGHFPRRPL_ 0 0 0 ENST00000468403.1_1_1:153751697-153752222:+|nuORF ENST00000468403.1_1_1:153751697-153752222:+|nuORF ENST00000468403.1_1_1:153751697-153752222:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 589.8031005859375 2 590.340907 1178.66726 0.5318 0.00031394 -0.45234 -0.00026704 0.079458 4.6908E-05 590.3406595644362 80.637 0.25603 74.462 74.35 74.606 -6.1757 17 13 2 0 0 0 0.23195 1 52919 52919 6.2058 0 1 11655000 73233 13809 49014 50070 85145 85145 0.08507337965329498 VTGKRPEI 8 Unmodified _VTGKRPEI_ 0 0 0 REV__ENST00000567034.5_1_16:30198370-30199113:+|nuORF REV__ENST00000567034.5_1_16:30198370-30199113:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2698669433594 2 450.269084 898.523616 -0.072603 -3.2691E-05 0.35604 0.00016031 0.28344 0.00012762 450.26923342564265 38.498 0.31117 38.212 38.071 38.382 -0.28687 42 14 4 0 0 0 0.46494 1 20233 20233 38.151 0 1 19060000 + 73234 18261 49015 50071 85146 85146 0.07029491134380805 VTGKRPEI 8 Unmodified _VTGKRPEI_ 0 0 0 REV__ENST00000567034.5_1_16:30198370-30199113:+|nuORF REV__ENST00000567034.5_1_16:30198370-30199113:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 450.269084 898.523616 0.4624 0.00020821 -0.095471 -4.2988E-05 0.36693 0.00016522 450.26896708126833 38.144 0.21395 38.161 38.025 38.239 0.01704 -0.025523 -0.00029321 NaN 38.151 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2505900 + 73235 18261 49015 50071 0.07029491134380805 VTGLAGGGVL 10 Unmodified _VTGLAGGGVL_ 0 0 0 ENST00000405486.5_2_22:41641775-41642279:-|nuORF ENST00000405486.5_2_22:41641775-41642279:-|nuORF ENST00000405486.5_2_22:41641775-41642279:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 843.4951782226562 1 843.493444 842.486168 -0.37865 -0.00031939 1.2777 0.0010777 0.89906 0.00075835 843.4945468867162 104.59 0.043922 104.54 104.51 104.55 -0.048737 5 3 2 0 0 0 0.72607 1 58076 58076 0 0 1 2919100 73236 12923 49016 50072 85147 85147 0.05862399868783541 VTGLGPRR 8 Unmodified _VTGLGPRR_ 0 0 0 REV__ENST00000252506.10_1_9:92221290-92221356:+|nuORF REV__ENST00000252506.10_1_9:92221290-92221356:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2620544433594 2 428.261594 854.508634 1.0702 0.00045833 0.31718 0.00013584 1.3874 0.00059416 428.26165220460723 90.072 0.74923 83.896 83.526 84.275 -6.1757 130 42 4 0 0 0 0.80992 2 59419 59419;59547 0.69038 0 1 223570000 + 73237 20003 49017 50073 85148;85149 85148 0.0755604405703707 VTGLVFYR 8 Unmodified _VTGLVFYR_ 0 0 0 REV__nc|ENSG00000172046|O94966|USP19 REV__nc|ENSG00000172046|O94966|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7739868164062 2 477.774003 953.533452 0.80977 0.00038689 -0.17448 -8.3363E-05 0.63528 0.00030352 477.77384919262676 46.02 0.22857 46.02 45.957 46.186 0 15 10 2 0 0 0 0.42423 1 25147 25147 42.095 1.646 1 1917500 + 73238 29782 49018 50074 85150 85150 0.054826791397545094 VTGLVFYR 8 Unmodified _VTGLVFYR_ 0 0 0 REV__nc|ENSG00000172046|O94966|USP19 REV__nc|ENSG00000172046|O94966|USP19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.7747192382812 2 477.774003 953.533452 0.60082 0.00028706 -0.085168 -4.0691E-05 0.51566 0.00024637 477.7739556303733 46.133 0.17164 46.105 45.973 46.145 -0.028011 13 7 2 0 0 0 0.48669 1 24798 24798 36.044 0 1 1295300 + 73239 29782 49018 50074 85151 85151 0.054826791397545094 VTGLVFYRL 9 Unmodified _VTGLVFYRL_ 0 0 0 REV__nc|ENSG00000172046|O94966|USP19 REV__nc|ENSG00000172046|O94966|USP19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.7953491210938 2 534.316035 1066.61752 1.6517 0.00088251 4.41 0.0023563 6.0617 0.0032388 534.318379540248 100.86 0.15712 94.68 94.623 94.78 -6.1757 11 9 2 0 0 0 0.062767 1 67532 67532 32.305 0 1 29622000 + 73240 29782 49019 50075 85152 85152 0.08687210236666942 VTGLVPCKVSA 11 Unmodified _VTGLVPCKVSA_ 0 0 0 ENSG00000145536|ENST00000274181|ADAMTS16;nc|ENSG00000145536|Q8TE57-2|ADAMTS16 ENSG00000145536|ENST00000274181|ADAMTS16 ENSG00000145536|ENST00000274181|ADAMTS16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.8245239257812 2 537.30481 1072.59507 0.58589 0.0003148 -0.94866 -0.00050972 -0.36277 -0.00019492 537.3038794567718 73.238 0.26205 72.762 72.651 72.913 -0.47588 16 11 2 0 0 0 0.2578 1 40150 40150 27.629 5.8822 1 889510 73241 5704 49020 50076 85153 85153 0.061672427767234694 VTGNPGEDL 9 Unmodified _VTGNPGEDL_ 0 0 0 REV__nc|ENSG00000107736|Q9H251-4|CDH23 REV__nc|ENSG00000107736|Q9H251-4|CDH23 MSMS AL20221201_MKP_PDAC_01 4 451.2151184082031 2 451.216714 900.418876 NaN NaN NaN NaN NaN NaN NaN 50.379 1 44.839 44.339 45.339 -5.5391 0 0 0 0.7453 1 31594 31594 7.9102 0 1 + 73242 18573 49021 50077 85154 85154 -0.03531675132842338 VTGNRPAEPG 10 Unmodified _VTGNRPAEPG_ 0 0 0 REV__ENSG00000120833|ENST00000551556|SOCS2 REV__ENSG00000120833|ENST00000551556|SOCS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2568969726562 2 499.256705 996.498858 -0.13924 -6.9518E-05 0.54722 0.00027321 0.40798 0.00020369 499.2563758250865 78.712 0.21033 78.226 78.084 78.295 -0.48596 13 7 2 0 0 0 0.6966 1 43138 43138 3.2813 0.39209 1 592950 + 73243 19265 49022 50078 85155 85155 0.0004681126099512767 VTGPREYVL 9 Unmodified _VTGPREYVL_ 0 0 0 ENST00000532648.1_1_11:65634391-65635116:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2 ENST00000532648.1_1_11:65634391-65635116:-|nuORF ENST00000532648.1_1_11:65634391-65635116:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2884521484375 2 517.287474 1032.5604 0.477 0.00024674 -0.74826 -0.00038707 -0.27126 -0.00014032 517.2873638734018 59.411 0.36411 59.411 59.285 59.649 0 30 15 3 0 0 0 0.095405 1 33096 33096 34.102 10.954 1 2675700 73244 8238 49023 50079 85156 85156 0.04541742960282136 VTGPRGGG 8 Unmodified _VTGPRGGG_ 0 0 0 REV__ENST00000606070.1_1_6:108279748-108280261:+|nuORF REV__ENST00000606070.1_1_6:108279748-108280261:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.1893310546875 2 350.69047 699.366387 0.34793 0.00012202 0.048515 1.7014E-05 0.39644 0.00013903 350.690478130727 72.925 0.29013 72.925 72.762 73.052 0 21 13 2 0 0 0 8.7369 1 40613 40613 0.79363 0 1 627480 + 73245 29293 49024 50080 85157 85157 0.004678313148701818 VTGPSLVPTW 10 Unmodified _VTGPSLVPTW_ 0 0 0 REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7890625 2 528.78985 1055.56515 3.37 0.001782 -4.0015 -0.0021159 -0.63146 -0.00033391 528.7872084802244 97.903 0.57635 97.885 97.678 98.255 -0.018188 45 20 4 0 0 0 0.44373 1 54458 54458 19.257 5.3509 1 10140000 + 73246 29130 49025 50081 85158 85158 0.03958627103043 VTGRQLAEDL 10 Unmodified _VTGRQLAEDL_ 0 0 0 REV__nc|ENSG00000178209|Q15149|PLEC REV__nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3001708984375 2 551.29857 1100.58259 0.17038 9.3933E-05 2.7793 0.0015322 2.9497 0.0016262 551.3005721960594 54.779 0.27932 54.312 54.182 54.461 -0.46664 27 13 3 0 0 0 0.67755 1 29759 29759 5.7319 0.50118 1 6241700 + 73247 29813 49026 50082 85159 85159 0.03631922638055585 VTGSEITEGVK 11 Unmodified _VTGSEITEGVK_ 0 0 0 REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.8397216796875 2 560.298236 1118.58192 0.94875 0.00053159 -1.0883 -0.00060979 -0.13958 -7.8204E-05 560.2978741780506 67.298 0.31564 61.122 61.052 61.368 -6.1757 29 17 2 0 0 0 0.27089 1 43993 43993 12.241 0 1 24463000 + 73248 17725 49027 50083 85160 85160 0.027370831983489552 VTGTHTVAE 9 Unmodified _VTGTHTVAE_ 0 0 0 REV__ENST00000528228.1_1_8:14166702-14167074:+|nuORF REV__ENST00000528228.1_1_8:14166702-14167074:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 457.7343444824219 2 457.732532 913.45051 NaN NaN NaN NaN NaN NaN NaN 38.276 1 33.907 33.407 34.407 -4.3689 0 0 0 0.12337 1 22556 22556 39.957 7.6518 1 + 73249 28409 49028 50084 85161 85161 -0.009676823789050104 VTGWEGAPL 9 Unmodified _VTGWEGAPL_ 0 0 0 REV__ENSG00000142330|ENST00000391984|CAPN10 REV__ENSG00000142330|ENST00000391984|CAPN10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2415161132812 2 465.239993 928.465432 NaN NaN NaN NaN NaN NaN NaN 65.966 1 65.481 64.981 65.981 -0.48428 0 0 0 0.46757 1 36011 36011 16.942 1.0951 1 + 73250 20567 49029 50085 85162 85162 -0.0016619051090174253 VTGWSGGH 8 Unmodified _VTGWSGGH_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MSMS AL20221201_MKP_PDAC_01 4 800.3653564453125 1 800.368578 799.361301 1.2114 0.00096957 -3.8409 -0.0030741 -2.6295 -0.0021045 800.365077619073 99.498 0.13704 93.322 93.243 93.38 -6.1757 11 8 2 0 0 0 0.79669 1 66293 66293 8.5933 2.8329 1 17283000 + 73251 29807 49030 50086 85163 85163 -0.04640472547748686 VTHAQSFLF 9 Unmodified _VTHAQSFLF_ 0 0 0 REV__ENSG00000125998|ENST00000374408|FAM83C REV__ENSG00000125998|ENST00000374408|FAM83C MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2774658203125 2 525.274367 1048.53418 1.2952 0.00068032 3.2315 0.0016974 4.5266 0.0023777 525.2762323335597 97.833 0.16197 91.658 91.587 91.749 -6.1757 13 10 2 0 0 0 0.031062 1 64865 64865 54.774 0 1 12701000 + 73252 19534 49031 50087 85164 85164 0.01185473788791569 VTHMVLIY 8 Unmodified _VTHMVLIY_ 0 0 0 ENST00000502306.1_1_5:15451209-15451341:+|nuORF ENST00000502306.1_1_5:15451209-15451341:+|nuORF ENST00000502306.1_1_5:15451209-15451341:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2685546875 2 488.270238 974.525924 NaN NaN NaN NaN NaN NaN NaN 59.749 1 59.259 58.759 59.759 -0.49079 0 0 0 0.88073 1 32513 32513 19.439 4.8573 1 73253 14452 49032 50088 85165 85165 0.03764203547825673 VTHPVKVTL 9 Unmodified _VTHPVKVTL_ 0 0 0 REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.3084716796875 2 497.30821 992.601866 -0.45811 -0.00022782 -0.2194 -0.00010911 -0.67751 -0.00033693 497.3078936120821 34.249 0.1896 34.249 34.156 34.345 0 21 9 3 0 0 0 0.047788 1 18020 18020 45.7 7.524 1 5053300 + 73254 26377 49033 50089 85166 85166 0.10526923719623937 VTHPVKVTL 9 Unmodified _VTHPVKVTL_ 0 0 0 REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.3083801269531 2 497.30821 992.601866 0.26947 0.00013401 -0.40606 -0.00020194 -0.1366 -6.793E-05 497.3080236441624 34.062 0.21248 34.091 33.973 34.185 0.028934 17 9 2 0 0 0 0.020973 1 17930 17930 62.573 2.4988 1 2414900 + 73255 26377 49033 50089 85167 85167 0.10526923719623937 VTHPVKVTL 9 Unmodified _VTHPVKVTL_ 0 0 0 REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF REV__ENST00000391854.6_1_1:235714221-235714440:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.308837890625 2 497.30821 992.601866 1.2684 0.00063077 -0.9343 -0.00046464 0.33407 0.00016613 497.3078760456943 37.739 0.54542 33.37 33.071 33.616 -4.3689 93 32 4 0 0 0 0.009483 2 22046 22046;22165 81.89 9.9679 1 86535000 + 73256 26377 49033 50089 85168;85169 85168 0.10526923719623937 VTHTSPSPP 9 Unmodified _VTHTSPSPP_ 0 0 0 ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 922.4613037109375 1 922.462872 921.455596 0.25202 0.00023248 -1.9465 -0.0017956 -1.6945 -0.0015631 922.4611029098403 39.535 0.37747 39.535 39.362 39.74 0 30 17 2 0 0 0 0.047196 1 21149 21149 46.021 7.8698 1 4841300 73257 13148 49034 50090 85170 85170 -0.008273785162828062 VTHTSPSPP 9 Unmodified _VTHTSPSPP_ 0 0 0 ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7350769042969 2 461.735074 921.455596 0.63951 0.00029528 -1.3856 -0.00063979 -0.7461 -0.0003445 461.7343817526363 39.532 0.39534 39.532 39.362 39.758 0 45 18 3 0 0 0 0.095405 1 21270 21270 34.102 7.2188 1 13528000 73258 13148 49034 50090 85171 85171 -0.008273785162828062 VTHTSPSPP 9 Unmodified _VTHTSPSPP_ 0 0 0 ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 461.7354736328125 2 461.735074 921.455596 0.5375 0.00024818 0.45458 0.0002099 0.99208 0.00045808 461.7353969149538 44.897 0.44291 40.045 39.851 40.294 -4.852 60 29 3 0 0 0 0.095405 2 27518 27372;27518 34.102 9.4286 1 26755000 73259 13148 49034 50090 85172;85173 85173 -0.008273785162828062 VTHTSPSPP 9 Unmodified _VTHTSPSPP_ 0 0 0 ENST00000424419.6_1_1:41157373-41232429:+|nuORF;ENST00000467203.5_1_1:41157373-41224011:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF ENST00000424419.6_1_1:41157373-41232429:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 922.463134765625 1 922.462872 921.455596 0.4375 0.00040357 0.025317 2.3354E-05 0.46281 0.00042693 922.4630798582464 44.934 0.32796 40.082 39.905 40.233 -4.852 37 21 2 0 0 0 0.03568 2 27409 27409;27541 52.268 11.919 1 10986000 73260 13148 49034 50090 85174;85175 85174 -0.008273785162828062 VTHTVEDGSD 10 Unmodified _VTHTVEDGSD_ 0 0 0 REV__ENST00000436287.1_1_1:224051789-224052101:-|nuORF REV__ENST00000436287.1_1_1:224051789-224052101:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.2974853515625 2 530.233093 1058.45163 0.90779 0.00048134 -3.5768 -0.0018965 -2.669 -0.0014152 530.2320436493287 80.241 0.45828 74.065 73.677 74.135 -6.1757 29 27 2 0 0 0 0.22489 1 52402 52402 13.042 8.2865 1 13972000 + 73261 27030 49035 50091 85176 85176 -0.07525512800657452 VTIDKLIQ 8 Unmodified _VTIDKLIQ_ 0 0 0 REV__nc|ENSG00000163249|Q8N7R7-3|CCNYL1 REV__nc|ENSG00000163249|Q8N7R7-3|CCNYL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2875366210938 2 465.286943 928.559333 1.1235 0.00052277 -0.083684 -3.8937E-05 1.0399 0.00048383 465.28688065454236 96.151 0.37474 89.976 89.748 90.122 -6.1757 72 22 4 0 0 0 0.16757 1 63617 63617 82.529 0 1 232080000 + 73262 21738 49036 50092 85177 85177 0.09219528591370363 VTIEGEWFY 9 Unmodified _VTIEGEWFY_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2717895507812 2 572.27149 1142.52843 0.36748 0.0002103 0.76409 0.00043727 1.1316 0.00064757 572.2718395263936 94.29 0.22677 94.29 94.134 94.36 0 24 16 2 0 0 0 0.58466 1 52065 52065 2.3027 0 1 381240 73263 7301 49037 50093 85178 85178 -0.03713669513513196 VTIEGEWFY 9 Unmodified _VTIEGEWFY_ 0 0 0 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 ENSG00000165164|ENST00000378653|CFAP47 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2717895507812 2 572.27149 1142.52843 NaN NaN NaN NaN NaN NaN NaN 94.366 1 94.366 93.866 94.866 0 0 0 0 0.84369 1 52162 52162 2.3027 0 1 73264 7301 49037 50093 85179 85179 -0.03713669513513196 VTIEVEVP 8 Unmodified _VTIEVEVP_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000470482.5_1_2:242174669-242176035:-|nuORF ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.2481384277344 2 443.250026 884.485499 NaN NaN NaN NaN NaN NaN NaN 76.461 1 75.981 75.481 76.481 -0.47945 0 0 0 0.29791 1 41854 41854 63.563 0 1 73265 3152 49038 50094 85180 85180 0.03863560429056179 VTIEVKLSL 9 Unmodified _VTIEVKLSL_ 0 0 0 REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF REV__ENST00000587044.1_1_17:41568567-41594747:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.3160095214844 2 501.3157 1000.61685 1.3714 0.0006875 -0.98863 -0.00049561 0.38277 0.00019189 501.31514031533396 62.41 0.36035 56.235 56.038 56.398 -6.1757 34 19 2 0 0 0 0.03568 1 40252 40252 52.268 0 1 26075000 + 73266 29117 49039 50095 85181 85181 0.11656370796947613 VTIGTLTTCA 10 Unmodified _VTIGTLTTCA_ 0 0 0 REV__nc|ENSG00000110203|P41439-4|FOLR3 REV__nc|ENSG00000110203|P41439-4|FOLR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 980.8235473632812 1 979.512859 978.505582 0.10085 9.8786E-05 -0.80911 -0.00079253 -0.70825 -0.00069374 979.5119404838839 78.155 0.23851 78.155 78.03 78.268 0 16 9 2 0 0 0 0.72607 1 43383 43383 0 0 1 876650 + 73267 29566 49040 50096 85182 85182 0.015469880973341787 VTIIESTGGFS 11 Unmodified _VTIIESTGGFS_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7890625 2 555.787504 1109.56045 0.61852 0.00034377 1.2832 0.00071321 1.9018 0.001057 555.7882389495794 93.238 0.95133 92.78 92.56 93.511 -0.4574 124 43 6 0 0 0 0.37677 1 50958 50958 22.736 2.2827 1 14699000 + 73268 186 49041 50097 85183 85183 0.010056981696152434 VTILKIIRV 9 Unmodified _VTILKIIRV_ 0 0 0 REV__ENST00000339365.2_1_10:75504155-75506467:+|nuORF REV__ENST00000339365.2_1_10:75504155-75506467:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1055.0556640625 1 1054.73468 1053.7274 0.36578 0.0003858 3.2526 0.0034307 3.6184 0.0038165 1055.7364544211575 53.697 0.11295 53.246 53.167 53.28 -0.45173 6 5 2 0 0 0 0.21893 1 29040 29040 0.52476 0 1 1580900 + 73269 25680 49042 50098 85184 85184 0.20268635575848748 VTILYMGLFL 10 Unmodified _VTILYMGLFL_ 0 0 0 REV__ENSG00000239590|ENST00000340750|OR1J4 REV__ENSG00000239590|ENST00000340750|OR1J4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5610656738281 3 390.559478 1168.6566 NaN NaN NaN NaN NaN NaN NaN 47.018 1 46.985 46.485 47.485 -0.033417 0 0 0 0.8634 1 25317 25317 9.544 0 1 + 73270 24440 49043 50099 85185 85185 0.07902174476021173 VTIMDYEEF 9 Unmodified _VTIMDYEEF_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000179750|Q9UH17-2|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2574462890625 2 573.754815 1145.49508 0.38052 0.00021832 0.31839 0.00018268 0.69891 0.000401 573.7549524635689 87.592 0.36884 87.592 87.419 87.788 0 26 16 2 0 0 0 0.58466 1 48488 48488 2.3027 0 1 384970 73271 8856 49044 50100 85186 85186 -0.0718503934774617 VTIMFWPP 8 Unmodified _VTIMFWPP_ 0 0 0 REV__nc|ENSG00000141314|P58872-2|RHBDL3 REV__nc|ENSG00000141314|P58872-2|RHBDL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7613220214844 2 495.759507 989.50446 0.31333 0.00015534 -0.93274 -0.00046241 -0.61941 -0.00030708 495.7595912689396 75.157 0.35854 75.157 75.035 75.393 0 32 20 2 0 0 0 0.77907 1 41791 41791 10.183 10.183 1 678700 + 73272 20526 49045 50101 85187 85187 0.009288185191053344 VTIPYMYGFLS 11 Unmodified _VTIPYMYGFLS_ 0 0 0 ENSG00000255012|ENST00000641076|OR5M1 ENSG00000255012|ENST00000641076|OR5M1 ENSG00000255012|ENST00000641076|OR5M1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8884887695312 3 430.886142 1289.6366 NaN NaN NaN NaN NaN NaN NaN 55.687 1 55.209 54.709 55.709 -0.47798 0 0 0 0.94184 1 30214 30214 0.40827 0 1 73273 10785 49046 50102 85188 85188 0.003363787453963596 VTKARLTDK 9 Unmodified _VTKARLTDK_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.3141479492188 2 516.314023 1030.61349 0.58103 0.0003 -0.21546 -0.00011125 0.36557 0.00018875 516.3137641621205 90.092 0.91434 90.135 89.859 90.773 0.042183 89 32 4 0 0 0 0.62242 1 50139 50139 0 0 1 465720000 73274 967 49047 50103 85189 85189 0.09941120742905696 VTKARLTDK 9 Unmodified _VTKARLTDK_ 0 0 0 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 ENSG00000067900|ENST00000399799|ROCK1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 516.314023 1030.61349 0.36793 0.00018997 -0.40521 -0.00020922 -0.037281 -1.9249E-05 516.3137571367479 90.598 0.3508 90.103 89.891 90.242 -0.49457 0.053856 -0.0003026 NaN 0 38 16 3 NaN NaN NaN NaN 0 NaN NaN 0 2101800 73275 967 49047 50103 0.09941120742905696 VTKEKIQE 8 Unmodified _VTKEKIQE_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000440465.1_1_10:36811746-36813066:-|nuORF;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.3790893554688 1 974.551687 973.544411 0.54642 0.00053251 -2.7001 -0.0026314 -2.1537 -0.0020989 974.5502786338668 29.67 0.12252 29.59 29.501 29.624 -0.080429 6 4 2 0 0 0 0.80722 1 15371 15371 2.3027 0 1 3043200 73276 2369 49048 50104 85190 85190 0.05658036723366422 VTKESERKL 9 Unmodified _VTKESERKL_ 0 0 0 REV__nc|ENSG00000182923|Q96MT8-3|CEP63 REV__nc|ENSG00000182923|Q96MT8-3|CEP63 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3167114257812 2 545.316763 1088.61897 0.29242 0.00015946 0.33381 0.00018203 0.62623 0.00034149 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.59218 1 42895 42895 1.8442 0 1 5672300 + 73277 23308 49049 50105 85191 85191 0.07820799534761136 VTKGSLKI 8 Unmodified _VTKGSLKI_ 0 0 0 REV__ENSG00000171467|ENST00000361428|ZNF318 REV__ENSG00000171467|ENST00000361428|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2751770019531 2 423.276378 844.538203 NaN NaN NaN NaN NaN NaN NaN 79.458 1 78.969 78.469 79.469 -0.48932 0 0 0 0.97444 1 43521 43521 0 0 1 + 73278 22563 49050 50106 85192 85192 0.10971563282498664 VTKISTWF 8 Unmodified _VTKISTWF_ 0 0 0 ENST00000257770.7_1_6:86201886-86203603:+|nuORF ENST00000257770.7_1_6:86201886-86203603:+|nuORF ENST00000257770.7_1_6:86201886-86203603:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.2736206054688 2 491.273835 980.533118 0.6689 0.00032861 0.4307 0.00021159 1.0996 0.00054021 491.2734432877727 48.32 0.21812 48.282 48.164 48.382 -0.038643 21 10 3 0 0 0 0.40035 1 26061 26061 44.407 0.54872 1 4000200 73279 11196 49051 50107 85193 85193 0.04207259419888487 VTKKRRRK 8 Unmodified _VTKKRRRK_ 0 0 0 REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF REV__ENST00000428417.5_1_1:15546837-15546969:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 357.9124755859375 3 357.912236 1070.71488 NaN NaN NaN NaN NaN NaN NaN 1.5413 1 -0.94063 -1.4406 -0.44063 -2.482 0 0 0 0.97444 1 798 798 0 0 1 + 73280 25283 49052 50108 85194 85194 0.1823503695616182 VTKNSSSI 8 Unmodified _VTKNSSSI_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2297058105469 2 418.229625 834.444697 0.037515 1.569E-05 -0.96797 -0.00040483 -0.93046 -0.00038914 418.2290712875104 20.661 0.19778 20.672 20.578 20.776 0.010551 12 8 2 0 0 0 0.63229 1 10543 10543 23.148 0 1 769380 73281 7532 49053 50109 85195 85195 0.020852191094377304 VTKNWSLTI 9 Unmodified _VTKNWSLTI_ 0 0 0 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 MSMS AL20221201_MKP_PDAC_01 4 531.3024291992188 2 531.303124 1060.5917 NaN NaN NaN NaN NaN NaN NaN 94.553 1 88.377 87.877 88.877 -6.1757 0 0 0 0.061499 1 62627 62627 49.554 7.7147 1 + 73282 23820 49054 50110 85196 85196 0.06382315994369492 VTKRTRSL 8 Unmodified _VTKRTRSL_ 0 0 0 ENST00000372791.7_2_9:131255031-131255067:+|nuORF ENST00000372791.7_2_9:131255031-131255067:+|nuORF ENST00000372791.7_2_9:131255031-131255067:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 480.8013305664062 2 480.801083 959.587613 NaN NaN NaN NaN NaN NaN NaN 88.813 1 88.309 87.809 88.809 -0.50423 0 0 0 0.97444 1 48568 48568 0 0 1 73283 12390 49055 50111 85197 85197 0.1062027129131593 VTKRTRSL 8 Unmodified _VTKRTRSL_ 0 0 0 ENST00000372791.7_2_9:131255031-131255067:+|nuORF ENST00000372791.7_2_9:131255031-131255067:+|nuORF ENST00000372791.7_2_9:131255031-131255067:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 480.8022155761719 2 480.801083 959.587613 1.3268 0.00063795 -0.1509 -7.2551E-05 1.176 0.0005654 480.8009136109158 95.375 0.71498 89.199 88.837 89.552 -6.1757 100 41 3 0 0 0 0.80143 3 63001 63001;63115;63236 5.7604 0 1 168850000 73284 12390 49055 50111 85198;85199;85200 85198 0.1062027129131593 VTKVQRQDVS 10 Unmodified _VTKVQRQDVS_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.218994140625 3 387.219172 1158.63569 -0.54394 -0.00021062 0.76197 0.00029505 0.21803 8.4425E-05 387.2194093937501 17.561 0.07476 17.575 17.54 17.615 0.013865 25 16 2 0 0 0 0.69126 1 8737 8737 3.8763 1.97 1 699380 + 73285 19837 49056 50112 85201 85201 0.06271300420712578 VTKVQRQDVSI 11 Unmodified _VTKVQRQDVSI_ 0 0 0 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 REV__nc|ENSG00000132274|Q8IYM9-2|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8672485351562 2 636.867151 1271.71975 -0.033639 -2.1424E-05 0.99626 0.00063448 0.96262 0.00061306 636.867738658697 33.077 0.20746 33.107 32.979 33.186 0.029743 19 8 3 0 0 0 0.57006 1 17384 17384 7.609 2.7119 1 1802100 + 73286 19837 49057 50113 85202 85202 0.09475831517625011 VTKYNRLL 8 Unmodified _VTKYNRLL_ 0 0 0 nc|ENSG00000188316|A6NNW6-2|ENO4;nc|ENSG00000188316|A6NNW6-4|ENO4;ENSG00000188316|ENST00000341276|ENO4 nc|ENSG00000188316|A6NNW6-2|ENO4 nc|ENSG00000188316|A6NNW6-2|ENO4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.3080139160156 2 503.805834 1005.59712 0.87633 0.0004415 -0.11311 -5.6985E-05 0.76322 0.00038451 504.307087252843 66.042 0.20666 59.866 59.758 59.965 -6.1757 17 11 2 0 0 0 8.7369 1 42874 42874 23.148 0 1 15537000 73287 9648 49058 50114 85203 85203 0.09454039576849027 VTLAEVHVPG 10 Unmodified _VTLAEVHVPG_ 0 0 0 REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant REV__TNXB|p.P2731Rfs*12|1|0.26|ENSG00000168477|chr6:32056126-32056126|G/-|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 511.7444458007812 2 511.287474 1020.5604 0.77412 0.0003958 -1.241 -0.00063453 -0.46692 -0.00023873 511.2874049265261 60.108 0.30542 53.993 53.87 54.175 -6.1147 29 15 3 0 0 0 0.16163 1 38658 38658 37.974 3.5723 1 28149000 + 73288 22313 49059 50115 85204 85204 0.05093742960286818 VTLATGVLCL 10 Unmodified _VTLATGVLCL_ 0 0 0 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 ENSG00000140274|ENST00000323030|DUOXA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.2870788574219 2 495.288628 988.562703 0.54989 0.00027235 -3.2276 -0.0015986 -2.6777 -0.0013262 495.2869732283447 76.484 0.089943 70.308 70.282 70.372 -6.1757 5 4 2 0 0 0 0.14917 1 50051 50051 39.957 5.8549 1 7663200 73289 5215 49060 50116 85205 85205 0.06796455373716981 VTLDEPAPR 9 Unmodified _VTLDEPAPR_ 0 0 0 REV__ENST00000504406.5_1_5:176830401-176830713:-|nuORF REV__ENST00000504406.5_1_5:176830401-176830713:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7699584960938 2 499.269281 996.52401 0.74474 0.00037183 -0.25702 -0.00012832 0.48772 0.0002435 499.2696937918514 60.241 0.42548 60.241 60.068 60.494 0 62 18 4 0 0 0 0.20428 1 33660 33660 22.736 4.6013 1 19043000 + 73290 19779 49061 50117 85206 85206 0.02560866063561207 VTLDGDELL 9 Unmodified _VTLDGDELL_ 0 0 0 REV__nc|ENSG00000125257|O15439-4|ABCC4 REV__nc|ENSG00000125257|O15439-4|ABCC4 MSMS AL20221201_MKP_PDAC_01 4 487.7346496582031 2 487.755672 973.496792 NaN NaN NaN NaN NaN NaN NaN 54.959 1 49.094 48.594 49.594 -5.8653 0 0 0 0.50124 1 34925 34925 15.847 1.0089 1 + 73291 19484 49062 50118 85207 85207 0.008983377325421316 VTLDGIPEV 9 Unmodified _VTLDGIPEV_ 0 0 0 ENSG00000120690|ENST00000239882|ELF1 ENSG00000120690|ENST00000239882|ELF1 ENSG00000120690|ENST00000239882|ELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7611083984375 2 471.760758 941.506963 0.42246 0.0001993 -0.49029 -0.0002313 -0.067823 -3.1996E-05 471.76055310673 69.241 0.28028 69.241 69.046 69.326 0 30 12 3 0 0 0 0.016184 2 38515 38515;38613 67.344 0 1 2870200 73292 3529 49063 50119 85208;85209 85208 0.033869454577597935 VTLDGIPEV 9 Unmodified _VTLDGIPEV_ 0 0 0 ENSG00000120690|ENST00000239882|ELF1 ENSG00000120690|ENST00000239882|ELF1 ENSG00000120690|ENST00000239882|ELF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.5137939453125 1 942.514239 941.506963 -0.028762 -2.7108E-05 -0.15832 -0.00014922 -0.18708 -0.00017633 942.5139965158006 69.233 0.37887 69.233 68.998 69.377 0 42 16 3 0 0 0 0.019303 1 38592 38592 64.236 6.765 1 7721500 73293 3529 49063 50119 85210 85210 0.033869454577597935 VTLDIPKV 8 Unmodified _VTLDIPKV_ 0 0 0 REV__ENSG00000168286|ENST00000303596|THAP11 REV__ENSG00000168286|ENST00000303596|THAP11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.55322265625 2 442.776211 883.537869 0.89294 0.00039537 2.9444 0.0013037 3.8373 0.0016991 442.7771665887784 80.754 0.21205 80.811 80.703 80.915 0.057587 10 7 2 0 0 0 8.7369 1 44652 44652 0.69038 0 1 1062000 + 73294 22300 49064 50120 85211 85211 0.09144143562662066 VTLEEAEAME 10 Unmodified _VTLEEAEAME_ 0 0 0 chr12:54283132-54283827|179|36.79|0.0|21.81|+|0|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|0|HNRNPA1,HNRNPA1|1 chr12:54283132-54283827|179|36.79|0.0|21.81|+|0|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5067138671875 3 374.505878 1120.49581 0.67629 0.00025328 -1.6114 -0.00060348 -0.93511 -0.0003502 374.50580007865443 84.771 0.57216 78.595 78.366 78.938 -6.1757 78 33 3 0 0 0 0.59286 1 55682 55682 11.518 3.0736 1 22331000 73295 78 49065 50121 85212 85212 -0.059622446986850264 VTLEGQRGPVL 11 Unmodified _VTLEGQRGPVL_ 0 0 0 REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF REV__ENST00000530439.1_2_11:10327370-10327646:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.8380737304688 2 584.837862 1167.66117 0.85461 0.00049981 0.236 0.00013802 1.0906 0.00063783 584.8379520327392 52.597 0.44408 46.863 46.635 47.079 -5.7345 63 24 3 0 0 0 0.24216 1 33159 33159 29.841 3.5724 1 116220000 + 73296 28440 49066 50122 85213 85213 0.08404774943142002 VTLETKLE 8 Unmodified _VTLETKLE_ 0 0 0 ENSG00000080709|ENST00000673685|KCNN2;nc|ENSG00000080709|Q9H2S1-2|KCNN2;nc|ENSG00000080709|Q9H2S1|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 ENSG00000080709|ENST00000673685|KCNN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 932.5333251953125 1 932.529889 931.522613 0.56665 0.00052842 0.034629 3.2292E-05 0.60128 0.00056071 932.5298494152196 67.868 0.33291 67.386 67.165 67.498 -0.48219 36 14 3 0 0 0 0.5284 1 36992 36992 32.117 0 1 5107300 73297 1304 49067 50123 85214 85214 0.05411231974812836 VTLEVLELE 9 Unmodified _VTLEVLELE_ 0 0 0 REV__ENST00000463792.5_1_2:220099420-220100035:+|nuORF REV__ENST00000463792.5_1_2:220099420-220100035:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 523.3243408203125 2 522.794798 1043.57504 1.1028 0.00057655 -4.3635 -0.0022812 -3.2606 -0.0017046 523.2953359028552 99.441 0.31744 93.265 93.081 93.399 -6.1757 27 20 2 0 0 0 0.05527 1 66085 66085 42.095 6.0504 1 39644000 + 73298 21774 49068 50124 85215 85215 0.05499770317783259 VTLFLKLS 8 Unmodified _VTLFLKLS_ 0 0 0 nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF;ENST00000466898.1_1_3:113658724-113658844:+|nuORF;ENST00000491038.1_1_3:113658724-113664322:+|nuORF nc|ENSG00000178075|Q8IYS0-2|GRAMD1C nc|ENSG00000178075|Q8IYS0-2|GRAMD1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.7943420410156 2 460.794404 919.574254 0.12108 5.5791E-05 -1.6534 -0.00076186 -1.5323 -0.00070607 460.79347098670354 32.951 0.3442 32.981 32.864 33.208 0.029747 22 14 2 0 0 0 0.80311 1 17438 17438 4.756 0 1 898270 73299 8728 49069 50125 85216 85216 0.11125020459360258 VTLIILEIA 9 Unmodified _VTLIILEIA_ 0 0 0 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000070961|P20020-6|ATP2B1;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000070961|P20020-4|ATP2B1;nc|ENSG00000070961|P20020-1|ATP2B1;ENST00000549585.1_1_12:90035929-90049663:-|nuORF;ENST00000480680.2_1_3:10429922-10491260:-|nuORF;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4 nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000058668|P23634-5|ATP2B4 nc|ENSG00000070961|P20020-5|ATP2B1 MSMS AL20221201_MKP_PDAC_01 4 493.1408386230469 2 492.820618 983.626684 NaN NaN NaN NaN NaN NaN NaN 0.022274 1 -2.4597 -2.9597 -1.9597 -2.482 0 0 0 0.8622 1 10 10 0 0 1 73300 1047;805 49070 50126 85217 85217 0.13421558802303934 VTLIVSVLTV 10 Unmodified _VTLIVSVLTV_ 0 0 0 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 MSMS AL20221201_MKP_PDAC_01 4 522.33984375 2 522.339175 1042.6638 NaN NaN NaN NaN NaN NaN NaN 106.57 1 100.39 99.894 100.89 -6.1757 0 0 0 1.0061 1 71329 71329 0 0 1 73301 8438 49071 50127 85218 85218 0.14417230348067278 VTLIVSVLTV 10 Unmodified _VTLIVSVLTV_ 0 0 0 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 ENSG00000174599|ENST00000310754|TRAM1L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 522.33984375 2 522.339175 1042.6638 1.6599 0.00086701 -0.077395 -4.0427E-05 1.5825 0.00082659 522.3398348332911 106.51 0.12617 100.33 100.27 100.4 -6.1757 30 24 2 0 0 0 0.24012 1 71329 71329 0 0 1 1334900 73302 8438 49071 50127 85219 85219 0.14417230348067278 VTLKTIKKK 9 Unmodified _VTLKTIKKK_ 0 0 0 nc|ENSG00000186462|Q9ULW6-2|NAP1L2;ENSG00000186462|ENST00000373517|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1;nc|ENSG00000187109|P55209-2|NAP1L1;ENSG00000187109|ENST00000618691|NAP1L1 nc|ENSG00000186462|Q9ULW6-2|NAP1L2;nc|ENSG00000187109|P55209-3|NAP1L1 nc|ENSG00000187109|P55209-3|NAP1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1058.736694335938 1 1058.72959 1057.72232 0.50474 0.00053438 4.377 0.004634 4.8817 0.0051684 1058.7361970807694 46.782 0.35423 46.445 46.327 46.681 -0.33664 22 17 2 0 0 0 0.61381 1 25176 25176 0.52476 0 1 4169400 73303 9540;9477 49072 50128 85220 85220 0.1957633171323323 VTLLEGDHVRF 11 Unmodified _VTLLEGDHVRF_ 0 0 0 nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 nc|ENSG00000009307|O75534-2|CSDE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3511962890625 2 643.348594 1284.68264 0.69775 0.0004489 3.9237 0.0025243 4.6215 0.0029732 643.35056765427 102.13 0.080139 95.95 95.898 95.978 -6.1757 8 3 3 0 0 0 0.16973 1 68546 68546 34.402 15.145 1 12146000 73304 401 49073 50129 85221 85221 0.05168159971822206 VTLLEPPTF 9 Unmodified _VTLLEPPTF_ 0 0 0 ENST00000427383.6_2_11:125495702-125499145:+|nuORF ENST00000427383.6_2_11:125495702-125499145:+|nuORF ENST00000427383.6_2_11:125495702-125499145:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.7854309082031 2 508.786776 1015.559 1.0072 0.00051246 -2.9811 -0.0015167 -1.9739 -0.0010043 508.78532517382183 61.699 0.19284 55.523 55.404 55.597 -6.1757 13 9 2 0 0 0 0.2143 1 39771 39771 21.747 1.3321 1 11589000 73305 13190 49074 50130 85222 85222 0.051841088715036676 VTLLRGVSIII 11 Unmodified _VTLLRGVSIII_ 0 0 0 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 ENSG00000151012|ENST00000280612|SLC7A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5382995605469 3 395.263941 1182.76999 NaN NaN NaN NaN NaN NaN NaN 29.184 1 29.184 28.684 29.684 0 0 0 0 0.94144 1 15108 15108 0.50596 0 1 73306 6085 49075 50131 85223 85223 0.18591985913440112 VTLLWSILH 9 Unmodified _VTLLWSILH_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2964477539062 2 541.32386 1080.63317 0.21508 0.00011643 1.3384 0.00072452 1.5535 0.00084095 541.3247192962741 64.962 0.1718 64.478 64.403 64.575 -0.48428 13 7 2 0 0 0 0.20727 1 35419 35419 7.9102 0 1 478940 73307 1358 49076 50132 85224 85224 0.0960749675371062 VTLNLEKNS 9 Unmodified _VTLNLEKNS_ 0 0 0 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2817077636719 2 509.282389 1016.55022 -0.28712 -0.00014622 -0.64936 -0.00033071 -0.93648 -0.00047693 509.2820682842315 34.84 0.24364 34.84 34.656 34.9 0 18 12 2 0 0 0 0.044011 1 18391 18391 47.749 0 1 3271000 73308 9453 49077 50133 85225 85225 0.042611352350377274 VTLPHGDP 8 Unmodified _VTLPHGDP_ 0 0 0 REV__nc|ENSG00000005889|P17010-2|ZFX REV__nc|ENSG00000005889|P17010-2|ZFX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.429931640625 1 835.430844 834.423567 -0.44752 -0.00037387 -0.38631 -0.00032273 -0.83383 -0.0006966 835.4303554844943 41.713 0.1966 41.713 41.589 41.785 0 12 9 2 0 0 0 0.3408 1 22521 22521 50.855 3.9342 1 1967900 + 73309 16976 49078 50134 85226 85226 -0.00026746199432636786 VTLPLRKLL 9 Unmodified _VTLPLRKLL_ 0 0 0 REV__ENSG00000185842|ENST00000682510|DNAH14 REV__ENSG00000185842|ENST00000682510|DNAH14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1052.893188476562 1 1052.71903 1051.71175 0.58243 0.00061314 4.2977 0.0045243 4.8801 0.0051374 1053.7257685951467 50.72 0.20133 50.307 50.236 50.438 -0.41351 11 9 2 0 0 0 0.61381 1 27294 27294 0.52476 0 1 1419800 + 73310 23527 49079 50135 85227 85227 0.18796349058811757 VTLPNIASF 9 Unmodified _VTLPNIASF_ 0 0 0 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 ENSG00000011376|ENST00000645846|LARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2718505859375 2 481.271293 960.528032 0.58425 0.00028118 -0.31342 -0.00015084 0.27083 0.00013034 481.27108066701567 87.659 0.31565 87.155 86.97 87.286 -0.50423 25 14 2 0 0 0 0.49272 1 47903 47903 7.9102 0 1 609660 73311 444 49080 50136 85228 85228 0.04618955557270965 VTLPRGQLA 9 Unmodified _VTLPRGQLA_ 0 0 0 nc|ENSG00000130518|Q9H0B3-5|IQCN;nc|ENSG00000130518|Q9H0B3|IQCN;ENSG00000130518|ENST00000392413|IQCN nc|ENSG00000130518|Q9H0B3-5|IQCN nc|ENSG00000130518|Q9H0B3-5|IQCN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7909545898438 2 477.790184 953.565815 NaN NaN NaN NaN NaN NaN NaN 21.703 1 21.703 21.203 22.203 0 0 0 0 0.83049 1 11001 11001 3.9444 0 1 73312 4219 49081 50137 85229 85229 0.08717466542759666 VTLPYFHSF 9 Unmodified _VTLPYFHSF_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8197021484375 2 555.784567 1109.55458 0.46979 0.0002611 -1.2836 -0.00071339 -0.81378 -0.00045229 555.7843511449677 74.575 0.3121 74.621 74.501 74.813 0.045967 19 13 2 0 0 0 0.12183 1 41094 41094 34.102 10.082 1 1266900 73313 5706 49082 50138 85230 85230 0.004186444486094842 VTLPYMIFSQI 11 Unmodified _VTLPYMIFSQI_ 0 0 0 REV__ENST00000380180.7_1_4:95506732-95506798:+|nuORF REV__ENST00000380180.7_1_4:95506732-95506798:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.9046630859375 3 437.905425 1310.69445 0.69771 0.00030553 -2.3365 -0.0010232 -1.6388 -0.00071765 437.9045648031457 43.953 0.064461 39.189 39.139 39.204 -4.7648 5 3 2 0 0 0 0.58219 1 26769 26769 6.6235 2.2173 1 3914900 + 73314 26308 49083 50139 85231 85231 0.051526406708262584 VTLQDPFAY 9 Unmodified _VTLQDPFAY_ 0 0 0 REV__nc|ENSG00000099866|Q13477-2|MADCAM1 REV__nc|ENSG00000099866|Q13477-2|MADCAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2572021484375 2 527.266207 1052.51786 1.1195 0.00059025 0.30113 0.00015878 1.4206 0.00074903 527.2662733385689 54.388 0.48877 54.388 54.152 54.641 0 54 21 3 0 0 0 0.34999 1 30078 30078 14.838 0 1 67868000 + 73315 17988 49084 50140 85232 85232 -0.006296521679587386 VTLRKRTL 8 Unmodified _VTLRKRTL_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.8275146484375 2 493.827101 985.639649 -0.37792 -0.00018663 0.83652 0.00041309 0.4586 0.00022647 493.8274403377263 102.64 0.41083 102.59 102.4 102.81 -0.047928 24 13 2 0 0 0 0.81107 1 57094 57094 0 0 1 1847600 73316 393 49085 50141 85233 85233 0.14625434705089901 VTLRPKLR 8 Unmodified _VTLRPKLR_ 0 0 0 REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF REV__ENST00000480342.5_1_1:8525723-8716473:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.8292846679688 2 491.829643 981.644734 NaN NaN NaN NaN NaN NaN NaN 33.635 1 33.635 33.135 34.135 0 0 0 0 0.97444 1 17659 17659 2.5775 0 1 + 73317 27672 49086 50142 85234 85234 0.1531773856770542 VTLSIVHCPP 10 Unmodified _VTLSIVHCPP_ 0 0 0 ENSG00000011132|ENST00000316757|APBA3;ENST00000588984.5_1_19:3751026-3754498:-|nuORF ENSG00000011132|ENST00000316757|APBA3 ENSG00000011132|ENST00000316757|APBA3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 532.7918090820312 2 533.291702 1064.56885 0.62056 0.00033094 0.029462 1.5712E-05 0.65002 0.00034665 533.2919960253444 45.554 0.49321 40.599 40.49 40.983 -4.9549 53 32 2 0 0 0 0.20412 1 28152 28152 17.113 10.39 1 24645000 73318 435 49087 50143 85235 85235 0.03914973605265004 VTLSLLLGG 9 Unmodified _VTLSLLLGG_ 0 0 0 ENSG00000182768|ENST00000379095|NGRN;nc|ENSG00000182768|Q9NPE2-3|NGRN;ENST00000331497.3_1_15:90808929-90809136:+|nuORF ENSG00000182768|ENST00000379095|NGRN ENSG00000182768|ENST00000379095|NGRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.548828125 1 872.545145 871.537869 -0.14123 -0.00012323 0.49928 0.00043564 0.35804 0.00031241 872.545322697226 88.758 0.23863 88.253 88.156 88.394 -0.50423 16 9 2 0 0 0 0.62242 1 48597 48597 0 0 1 405910 73319 9084 49088 50144 85236 85236 0.09696143562689485 VTLSSGYRF 9 Unmodified _VTLSSGYRF_ 0 0 0 REV__ENSG00000196867|ENST00000301318|ZFP28 REV__ENSG00000196867|ENST00000301318|ZFP28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2734375 2 515.271824 1028.5291 0.094058 4.8465E-05 2.0868 0.0010753 2.1809 0.0011237 515.2724774802939 41.399 0.43859 36.791 36.547 36.985 -4.6079 64 28 3 0 0 0 0.12424 1 24910 24910 30.637 3.0077 1 50206000 + 73320 23877 49089 50145 85237 85237 0.01597169926208153 VTLTEGGLL 9 Unmodified _VTLTEGGLL_ 0 0 0 nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-2|CDKL1 nc|ENSG00000100490|Q00532-2|CDKL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 903.45849609375 1 902.519325 901.512048 -0.10542 -9.514E-05 0.45294 0.00040879 0.34752 0.00031365 902.5197303047148 89.711 0.36338 89.209 89.001 89.364 -0.50172 40 16 3 0 0 0 0.62242 1 48945 48945 0 0 1 3021800 73321 16085 49090 50146 85238 85238 0.05735249320400726 VTLTFFRNDLY 11 Unmodified _VTLTFFRNDLY_ 0 0 0 REV__ENSG00000271383|ENST00000651566|NBPF19 REV__ENSG00000271383|ENST00000651566|NBPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 694.8646240234375 2 694.864077 1387.7136 0.51102 0.00035509 2.3441 0.0016288 2.8551 0.0019839 694.8654775019982 40.486 0.23098 40.189 40.05 40.281 -0.29716 16 10 2 0 0 0 0.68427 1 21421 21421 5.7319 0 1 2300000 + 73322 24628 49091 50147 85239 85239 0.03525313286104392 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3140869140625 2 542.313492 1082.61243 -0.15329 -8.313E-05 0.13843 7.5073E-05 -0.014856 -8.0567E-06 542.3137518460778 51.198 0.35223 50.785 50.597 50.949 -0.41351 58 17 4 0 0 0 0.031062 1 27543 27543 54.774 14.816 1 22671000 + 73323 17918 49092 50148 85240 85240 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3137817382812 2 542.313492 1082.61243 -0.35143 -0.00019058 0.35803 0.00019417 0.0066057 3.5824E-06 542.3137615912889 55.892 0.30053 55.414 55.238 55.538 -0.47798 42 14 4 0 0 0 0.14602 1 30286 30286 28.487 8.0332 1 18542000 + 73324 17918 49092 50148 85241 85241 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3140258789062 2 542.313492 1082.61243 -0.1162 -6.3018E-05 -0.34424 -0.00018668 -0.46044 -0.0002497 542.3134660854664 55.527 0.28938 55.458 55.317 55.607 -0.068737 38 14 3 0 0 0 0.06187 2 30153 30153;30247 42.095 18.946 1 30872000 + 73325 17918 49092 50148 85242;85243 85242 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.2630615234375 2 542.313492 1082.61243 1.0162 0.00055109 1.285 0.00069686 2.3012 0.0012479 542.3147503714076 61.638 0.32983 55.462 55.289 55.619 -6.1757 30 16 2 0 0 0 0.18094 1 39735 39735 21.747 4.8044 1 26461000 + 73326 17918 49092 50148 85244 85244 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.313492 1082.61243 -0.15329 -8.313E-05 0.13843 7.5073E-05 -0.014856 -8.0567E-06 542.3137518460778 51.198 0.35223 50.785 50.597 50.949 -0.41351 0.023901 0.00042447 NaN 54.774 58 17 4 NaN NaN NaN NaN 0 NaN NaN 0 22671000 + 73327 17918 49092 50148 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 542.313492 1082.61243 -0.1162 -6.3018E-05 -0.34424 -0.00018668 -0.46044 -0.0002497 542.3134660854664 55.527 0.28938 55.458 55.317 55.607 -0.068737 0.013426 -0.00057353 NaN 42.095 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 30872000 + 73328 17918 49092 50148 0.07442906374035374 VTLTHTWLL 9 Unmodified _VTLTHTWLL_ 0 0 0 REV__ENSG00000092929|ENST00000207549|UNC13D REV__ENSG00000092929|ENST00000207549|UNC13D MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 542.313492 1082.61243 0.39044 0.00021174 -0.29791 -0.00016156 0.09253 5.0181E-05 542.3135732937856 56.705 0.3806 50.728 50.542 50.923 -5.9769 -0.032576 -4.879E-05 NaN 54.774 44 21 3 NaN NaN NaN NaN 0 NaN NaN 0 35014000 + 73329 17918 49092 50148 0.07442906374035374 VTLTLFLMTI 10 Unmodified _VTLTLFLMTI_ 0 0 0 ENSG00000187554|ENST00000642603|TLR5 ENSG00000187554|ENST00000642603|TLR5 ENSG00000187554|ENST00000642603|TLR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3413696289062 2 576.340861 1150.66717 1.1766 0.00067815 0.66953 0.00038587 1.8462 0.001064 576.3399680752489 95.266 0.80714 89.09 88.592 89.399 -6.1757 95 45 3 0 0 0 0.40046 1 63156 63156 32.305 0 1 32211000 73330 9566 49093 50149 85245 85245 0.09786157130452011 VTLTLLGKK 9 Unmodified _VTLTLLGKK_ 0 0 0 REV__nc|ENSG00000172349|Q14005-2|IL16 REV__nc|ENSG00000172349|Q14005-2|IL16 MSMS AL20221201_MKP_PDAC_01 4 486.3414001464844 2 486.826235 971.637917 NaN NaN NaN NaN NaN NaN NaN 105.56 1 99.385 98.885 99.885 -6.1757 0 0 0 0.85798 1 70724 70724 0.52476 0 1 + 73331 22644 49094 50150 85246 85246 0.15096380896477513 VTLVQPTSL 9 Unmodified _VTLVQPTSL_ 0 0 0 ENST00000394275.6_1_15:91477270-91478348:+|nuORF ENST00000394275.6_1_15:91477270-91478348:+|nuORF ENST00000394275.6_1_15:91477270-91478348:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2852172851562 2 479.2844 956.554247 0.63518 0.00030443 0.62115 0.00029771 1.2563 0.00060214 479.2845464804235 73.569 0.41029 73.569 73.469 73.879 0 30 17 2 0 0 0 0.54444 1 41103 41103 4.756 0 1 376830 73332 12734 49095 50151 85247 85247 0.07423224728779587 VTLVRIADL 9 Unmodified _VTLVRIADL_ 0 0 0 ENST00000529624.5_3_15:28877823-28916776:+|nuORF ENST00000529624.5_3_15:28877823-28916776:+|nuORF ENST00000529624.5_3_15:28877823-28916776:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3140563964844 2 500.313492 998.612431 1.0511 0.0005259 -0.023519 -1.1767E-05 1.0276 0.00051413 500.31354454854056 99.234 0.21971 93.058 92.94 93.159 -6.1757 40 12 5 0 0 0 0.013041 1 65986 65986 71.922 6.4486 1 1420300000 73333 14875 49096 50152 85248 85248 0.11306906374034043 VTLVRLLG 8 Unmodified _VTLVRLLG_ 0 0 0 REV__nc|ENSG00000165025|P43405-2|SYK REV__nc|ENSG00000165025|P43405-2|SYK MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.5784912109375 1 870.577114 869.569838 1.48 0.0012885 0.54092 0.00047091 2.021 0.0017594 870.577454834179 108.15 2.3415 101.97 100.95 103.29 -6.1757 714 428 2 0 0 0 0.81107 1 72446 72446 0 0 1 9076000 + 73334 21972 49097 50153 85249 85249 0.12983556036488153 VTLVRLLG 8 Unmodified _VTLVRLLG_ 0 0 0 REV__nc|ENSG00000165025|P43405-2|SYK REV__nc|ENSG00000165025|P43405-2|SYK MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7933654785156 2 435.792195 869.569838 1.6934 0.00073799 0.59134 0.0002577 2.2848 0.00099569 435.79249919012005 109.6 0.18597 103.42 103.37 103.55 -6.1757 58 40 2 0 0 0 0.81107 1 73203 73203 0 0 1 3024100 + 73335 21972 49097 50153 85250 85250 0.12983556036488153 VTLWLCPLLM 10 Unmodified _VTLWLCPLLM_ 0 0 0 ENST00000501122.2_1_11:65202507-65202588:+|nuORF ENST00000501122.2_1_11:65202507-65202588:+|nuORF ENST00000501122.2_1_11:65202507-65202588:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.8890991210938 3 396.888829 1187.64466 0.044309 1.7586E-05 0.75487 0.0002996 0.79918 0.00031719 396.88917340188925 28.123 0.22472 28.153 28.037 28.262 0.029564 18 8 3 0 0 0 0.60623 1 14633 14633 9.544 0 1 7969400 73336 14443 49098 50154 85251 85251 0.05834234461167398 VTMLRKMMKK 10 Unmodified _VTMLRKMMKK_ 0 0 0 REV__ENSG00000163530|ENST00000478945|DPPA2 REV__ENSG00000163530|ENST00000478945|DPPA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.5809020996094 3 422.580001 1264.71817 0.28197 0.00011916 1.1427 0.0004829 1.4247 0.00060206 422.58034239098885 68.849 0.21895 68.368 68.202 68.421 -0.48071 16 9 2 0 0 0 0.72044 1 37614 37614 0.62683 0 1 808400 + 73337 21779 49099 50155 85252 85252 0.09640459631987142 VTMNEFEYL 9 Unmodified _VTMNEFEYL_ 0 0 0 nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1 nc|ENSG00000142208|P31749-2|AKT1 nc|ENSG00000142208|P31749-2|AKT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2628784179688 2 573.262807 1144.51106 0.3764 0.00021578 0.32481 0.0001862 0.70122 0.00040198 573.2627573102635 86.461 0.37093 86.461 86.242 86.613 0 32 16 3 0 0 0 0.58466 1 47941 47941 2.3027 0 1 777210 73338 5402 49100 50156 85253 85253 -0.05541333110841151 VTMTRYRS 8 Unmodified _VTMTRYRS_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 507.2965087890625 2 507.263476 1012.5124 0.092505 4.6924E-05 -0.14982 -7.5997E-05 -0.057313 -2.9073E-05 507.2637352904256 23.628 0.42003 20.801 20.563 20.983 -2.8273 57 24 3 0 0 0 8.7369 1 12769 12769 26.884 4.1474 1 9258000 73339 6400 49101 50157 85254 85254 0.0066434576857545835 VTNFLLPSL 9 Unmodified _VTNFLLPSL_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|35|1|sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|35|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.29443359375 2 502.294768 1002.57498 0.33472 0.00016813 0.075846 3.8097E-05 0.41056 0.00020622 502.294867492449 73.432 0.26218 72.956 72.804 73.066 -0.47588 20 11 2 0 0 0 0.36964 1 40156 40156 13.906 1.3745 1 851530 + 73340 29431 49102 50158 85255 85255 0.07379815108436105 VTNFLLPSL 9 Unmodified _VTNFLLPSL_ 0 0 0 REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|35|1|sense REV__L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|35|1|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.76171875 2 502.294768 1002.57498 0.33472 0.00016813 0.075846 3.8097E-05 0.41056 0.00020622 502.294867492449 73.432 0.26218 72.956 72.804 73.066 -0.47588 20 11 2 0 0 0 0.21834 1 40233 40233 1.8442 0 1 851530 + 73341 29431 49102 50158 85256 85256 0.07379815108436105 VTNPINPWYF 10 Unmodified _VTNPINPWYF_ 0 0 0 ENST00000592915.1_1_17:42084599-42085966:+|nuORF;ENSG00000161653|ENST00000293404|NAGS ENST00000592915.1_1_17:42084599-42085966:+|nuORF ENST00000592915.1_1_17:42084599-42085966:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.813232421875 2 625.813856 1249.61316 0.42673 0.00026705 -0.54608 -0.00034175 -0.11935 -7.4693E-05 626.3150010300227 79.391 0.21376 79.446 79.336 79.55 0.054977 13 7 2 0 0 0 0.56348 1 43886 43886 13.042 0.80181 1 2263600 73342 6801 49103 50159 85257 85257 -0.0016629897691018414 VTNQKWLHL 9 Unmodified _VTNQKWLHL_ 0 0 0 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 REV__nc|ENSG00000134759|Q6IA86-7|ELP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2185668945312 3 380.217102 1137.62948 2.1278 0.00080902 0.010936 4.158E-06 2.1387 0.00081318 380.21739988245247 41.795 0.39484 37.188 36.999 37.394 -4.6079 47 24 3 0 0 0 0.49766 1 25095 25095 7.609 0.50723 1 16785000 + 73343 20006 49104 50160 85258 85258 0.06616826979848156 VTNRFVRNY 9 Unmodified _VTNRFVRNY_ 0 0 0 REV__ENST00000400864.3_1_19:55236001-55309429:+|nuORF REV__ENST00000400864.3_1_19:55236001-55309429:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.154541015625 3 390.21224 1167.61489 NaN NaN NaN NaN NaN NaN NaN 81.815 1 81.815 81.315 82.315 0 0 0 0 0.84369 1 45401 45401 1.1933 0.41681 1 + 73344 26601 49105 50161 85259 85259 0.03778754831705555 VTNRKRFD 8 Unmodified _VTNRKRFD_ 0 0 0 REV__ENSG00000126838|ENST00000261336|PZP REV__ENSG00000126838|ENST00000261336|PZP MULTI-MSMS AL20221201_MKP_PDAC_01 4 1035.577880859375 1 1035.5694 1034.56213 1.0476 0.0010849 1.597 0.0016538 2.6446 0.0027387 1035.574297406911 33.659 0.11977 29.674 29.627 29.747 -3.9853 9 6 2 0 0 0 0.80676 1 19336 19336 2.5775 0 1 6571600 + 73345 19562 49106 50162 85260 85260 0.04622796768899207 VTNWFKSAF 9 Unmodified _VTNWFKSAF_ 0 0 0 nc|ENSG00000164300|Q86VE9-2|SERINC5 nc|ENSG00000164300|Q86VE9-2|SERINC5 nc|ENSG00000164300|Q86VE9-2|SERINC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2810668945312 2 550.282192 1098.54983 0.19257 0.00010597 1.1475 0.00063146 1.3401 0.00073743 550.2828127457874 66.433 0.35556 65.949 65.838 66.194 -0.48323 20 16 2 0 0 0 0.16226 1 36280 36280 26.884 2.8631 1 1301100 73346 16339 49107 50163 85261 85261 0.004497603058553068 VTPADIRSF 9 Unmodified _VTPADIRSF_ 0 0 0 ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS ENSG00000151835|ENST00000382292|SACS ENSG00000151835|ENST00000382292|SACS MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2721252441406 2 503.271824 1004.5291 1.028 0.00051739 0.072771 3.6623E-05 1.1008 0.00055401 503.2717307236356 57.427 0.60098 51.4 51.049 51.65 -6.0275 86 32 3 0 0 0 0.10734 1 36790 36790 32.305 0 1 569060000 73347 6148 49108 50164 85262 85262 0.027011699261947797 VTPDRDIFI 9 Unmodified _VTPDRDIFI_ 0 0 0 REV__ENSG00000160410|ENST00000291842|SHKBP1 REV__ENSG00000160410|ENST00000291842|SHKBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2939453125 2 538.292756 1074.57096 0.37071 0.00019955 0.75102 0.00040427 1.1217 0.00060382 538.2934220859476 86.163 0.29266 85.66 85.518 85.811 -0.50318 14 11 2 0 0 0 0.41742 1 47148 47148 11.64 1.5664 1 383660 + 73348 21543 49109 50165 85263 85263 0.036657256147236694 VTPEELPAV 9 Unmodified _VTPEELPAV_ 0 0 0 REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7601318359375 2 477.760758 953.506963 0.43873 0.00020961 -2.0022 -0.00095658 -1.5635 -0.00074697 477.7597249826326 67.33 0.32998 67.33 67.175 67.505 0 22 13 2 0 0 0 0.2143 1 37563 37563 21.747 3.6003 1 2592400 + 73349 26735 49110 50166 85264 85264 0.028349454577551114 VTPEELPAV 9 Unmodified _VTPEELPAV_ 0 0 0 REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF REV__ENST00000413620.5_1_X:153775652-153780249:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7605590820312 2 477.760758 953.506963 NaN NaN NaN NaN NaN NaN NaN 67.854 1 67.372 66.872 67.872 -0.48218 0 0 0 0.36554 1 37075 37075 21.747 3.6003 1 + 73350 26735 49110 50166 85265 85265 0.028349454577551114 VTPELLERY 9 Unmodified _VTPELLERY_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7607421875 2 560.305864 1118.59717 0.75748 0.00042442 -0.321 -0.00017986 0.43648 0.00024456 560.3056306232338 57.271 0.19336 57.271 57.177 57.371 0 12 8 2 0 0 0 0.20358 1 31881 31881 10.074 2.1638 1 1173500 73351 10025 49111 50167 85266 85266 0.04261994786179457 VTPFEPAA 8 Unmodified _VTPFEPAA_ 0 0 0 ENST00000280527.6_1_2:36623834-36623918:+|nuORF ENST00000280527.6_1_2:36623834-36623918:+|nuORF ENST00000280527.6_1_2:36623834-36623918:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 831.4249877929688 1 831.424696 830.417419 0.18002 0.00014967 -0.036275 -3.016E-05 0.14375 0.00011951 831.4250620252377 66.544 0.28662 66.544 66.372 66.658 0 20 12 2 0 0 0 0.37649 1 37068 37068 46.921 2.5139 1 1646000 73352 11407 49112 50168 85267 85267 -0.0045726443096327785 VTPFHCTDL 9 Unmodified _VTPFHCTDL_ 0 0 0 nc|ENSG00000148290|Q15526-2|SURF1;ENSG00000148290|ENST00000371974|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.8724975585938 2 516.744585 1031.47462 -0.29732 -0.00015364 0.26818 0.00013858 -0.029142 -1.5059E-05 517.2455990397549 33.644 0.15888 33.644 33.588 33.747 0 14 8 2 0 0 0 0.18882 1 17639 17639 15.847 0 1 3132000 73353 5911 49113 50169 85268 85268 -0.039861652169065565 VTPFHCTDL 9 Unmodified _VTPFHCTDL_ 0 0 0 nc|ENSG00000148290|Q15526-2|SURF1;ENSG00000148290|ENST00000371974|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 nc|ENSG00000148290|Q15526-2|SURF1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 516.744585 1031.47462 0.64669 0.00033418 0.41679 0.00021537 1.0635 0.00054955 516.7446028949979 38.316 0.28924 33.948 33.836 34.126 -4.3689 0.15189 2.2498E-05 NaN 21.747 27 17 2 NaN NaN NaN NaN 0 NaN NaN 0 7077100 73354 5911 49113 50169 -0.039861652169065565 VTPGSLPA 8 Unmodified _VTPGSLPA_ 0 0 0 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 ENSG00000205832|ENST00000444310|C16orf96 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 741.8230590820312 1 741.414131 740.406855 -0.61421 -0.00045539 0.2681 0.00019878 -0.34611 -0.00025661 741.4145763672008 41.237 0.18853 41.237 41.137 41.325 0 11 8 2 0 0 0 8.7369 1 22218 22218 56.541 9.6204 1 1653800 73355 10384 49114 50170 85269 85269 0.026267529146139168 VTPHKLPA 8 Unmodified _VTPHKLPA_ 0 0 0 REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF REV__ENST00000551739.5_1_12:56332068-56333318:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.7619018554688 2 431.760895 861.507237 1.3039 0.00056298 -1.1717 -0.00050588 0.13225 5.71E-05 431.7610001123648 37.681 0.46015 33.312 33.071 33.531 -4.3689 48 27 2 0 0 0 0.3408 2 22223 22102;22223 50.855 2.5092 1 16727000 + 73356 28717 49115 50171 85270;85271 85271 0.07094409968260607 VTPICIADKEY 11 Unmodified _VTPICIADKEY_ 0 0 0 nc|ENSG00000101981|P00740-2|F9;ENSG00000101981|ENST00000218099|F9 nc|ENSG00000101981|P00740-2|F9 nc|ENSG00000101981|P00740-2|F9 MSMS AL20221201_MKP_PDAC_01 4 626.3170166015625 2 626.318114 1250.62167 NaN NaN NaN NaN NaN NaN NaN 81.942 1 75.766 75.266 76.266 -6.1757 0 0 0 0.79635 1 53808 53808 12.241 0 1 73357 2005 49116 50172 85272 85272 0.006388868773910872 VTPLLQSIF 9 Unmodified _VTPLLQSIF_ 0 0 0 REV__nc|ENSG00000112282|Q9ULK4-4|MED23 REV__nc|ENSG00000112282|Q9ULK4-4|MED23 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 508.7760009765625 2 509.302593 1016.59063 2.1925 0.0011167 -0.68404 -0.00034838 1.5085 0.00076829 509.30200105327197 94.228 0.38033 94.243 94.029 94.41 0.014244 20 13 2 0 0 0 0.14225 1 52386 52386 18.146 0 1 1037800 + 73358 18802 49117 50173 85273 85273 0.08300101625479783 VTPLLTLVTL 10 Unmodified _VTPLLTLVTL_ 0 0 0 ENST00000468403.1_1_1:153751119-153751515:+|nuORF ENST00000468403.1_1_1:153751119-153751515:+|nuORF ENST00000468403.1_1_1:153751119-153751515:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.3486938476562 2 535.347 1068.67945 NaN NaN NaN NaN NaN NaN NaN 18.793 1 18.799 18.299 19.299 0.0060463 0 0 0 0.9997 1 9538 9538 0.40072 0 1 73359 13808 49118 50174 85274 85274 0.1478551686514038 VTPNHLHL 8 Unmodified _VTPNHLHL_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.761962890625 2 465.761426 929.5083 NaN NaN NaN NaN NaN NaN NaN 74.48 1 74.004 73.504 74.504 -0.47588 0 0 0 0.97444 1 40764 40764 2.8892 0 1 + 73360 22428 49119 50175 85275 85275 0.040726243371977944 VTPRGYEF 8 Unmodified _VTPRGYEF_ 0 0 0 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 REV__nc|ENSG00000196358|Q96CW9-2|NTNG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.7446899414062 2 484.745442 967.476331 0.37829 0.00018337 0.42658 0.00020678 0.80487 0.00039016 484.7456610701539 66.794 0.32861 66.311 66.13 66.459 -0.48323 22 15 2 0 0 0 0.80232 1 36471 36471 5.2307 0 1 1234700 + 73361 23820 49120 50176 85276 85276 -0.008707881366262882 VTPRLKVTA 9 Unmodified _VTPRLKVTA_ 0 0 0 REV__ENSG00000006453|ENST00000005260|BAIAP2L1 REV__ENSG00000006453|ENST00000005260|BAIAP2L1 MSMS AL20221201_MKP_PDAC_01 4 492.9678344726562 2 492.813659 983.612765 NaN NaN NaN NaN NaN NaN NaN 109.74 1 103.57 103.07 104.07 -6.1757 0 0 0 0.85798 1 73273 73273 0.52476 0 1 + 73362 16989 49121 50177 85277 85277 0.12030326093872645 VTPSEVLPF 9 Unmodified _VTPSEVLPF_ 0 0 0 ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.7709350585938 2 494.771126 987.527698 0.65233 0.00032275 -0.45852 -0.00022686 0.19381 9.5891E-05 494.77079302781885 84.412 0.51294 83.912 83.666 84.179 -0.49961 58 23 3 0 0 0 0.023164 1 46199 46199 60.39 6.814 1 3746900 73363 15855 49122 50178 85278 85278 0.0334353583742768 VTPSEVLPF 9 Unmodified _VTPSEVLPF_ 0 0 0 ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF ENST00000606901.1_1_5:140705901-140706042:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 494.771126 987.527698 0.17442 8.6299E-05 0.19992 9.8914E-05 0.37434 0.00018521 494.77106285341796 83.966 0.43864 83.966 83.743 84.182 0 0.026721 0.00036604 NaN 60.39 44 22 3 NaN NaN NaN NaN 0 NaN NaN 0 915160 73364 15855 49122 50178 0.0334353583742768 VTPSHLEQE 9 Unmodified _VTPSHLEQE_ 0 0 0 REV__nc|ENSG00000124429|Q8WVV4-3|POF1B REV__nc|ENSG00000124429|Q8WVV4-3|POF1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7636108398438 2 520.256371 1038.49819 -0.0086665 -4.5088E-06 -0.23039 -0.00011986 -0.23906 -0.00012437 520.7596242465421 71.08 0.29649 71.08 70.954 71.251 0 16 12 2 0 0 0 0.19613 1 39653 39653 7.9102 0 1 1014300 + 73365 19444 49123 50179 85279 85279 -0.019520281786981286 VTPSSPLLL 9 Unmodified _VTPSSPLLL_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MSMS AL20221201_MKP_PDAC_01 4 463.7820129394531 2 463.781493 925.548434 NaN NaN NaN NaN NaN NaN NaN 86.489 1 80.313 79.813 80.813 -6.1757 0 0 0 0.071041 1 57018 57018 50.855 12.704 1 73366 1301 49124 50180 85280 85280 0.082681262171036 VTPTFWRVVRF 11 Unmodified _VTPTFWRVVRF_ 0 0 0 nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENSG00000132382|ENST00000254718|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3972778320312 2 704.398422 1406.78229 -0.012116 -8.5344E-06 -0.11848 -8.3461E-05 -0.1306 -9.1995E-05 704.3983496917787 93.734 0.90093 93.734 93.344 94.245 0 137 56 3 0 0 0 0.74203 1 51744 51744 0.30703 0 1 926800 73367 4400 49125 50181 85281 85281 0.09517022376439854 VTPTFWRVVRF 11 Unmodified _VTPTFWRVVRF_ 0 0 0 nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENSG00000132382|ENST00000254718|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A nc|ENSG00000132382|Q9BQG0-2|MYBBP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.3984375 2 704.398422 1406.78229 0.29721 0.00020935 -0.10951 -7.7136E-05 0.1877 0.00013222 704.3981865010386 94.33 1.0448 93.909 93.348 94.393 -0.42044 129 55 3 0 0 0 0.73115 3 51441 51342;51441;51535 1.3295 0 1 1037600 73368 4400 49125 50181 85282;85283;85284 85283 0.09517022376439854 VTPTPPYVL 9 Unmodified _VTPTPPYVL_ 0 0 0 REV__ENSG00000147324|ENST00000276282|MFHAS1 REV__ENSG00000147324|ENST00000276282|MFHAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7813720703125 2 493.781493 985.548434 0.66373 0.00032774 -0.74665 -0.00036868 -0.082924 -4.0946E-05 493.7807897717121 61.979 0.44164 61.491 61.284 61.726 -0.48764 41 20 3 0 0 0 0.12841 1 33736 33736 30.225 5.5509 1 1698400 + 73369 20883 49126 50182 85285 85285 0.05508126217080189 VTPTVKQE 8 Unmodified _VTPTVKQE_ 0 0 0 ENSG00000148737|ENST00000355995|TCF7L2;nc|ENSG00000148737|Q9NQB0-11|TCF7L2;nc|ENSG00000148737|Q9NQB0-3|TCF7L2;nc|ENSG00000148737|Q9NQB0-7|TCF7L2;nc|ENSG00000148737|Q9NQB0-5|TCF7L2;nc|ENSG00000148737|Q9NQB0-8|TCF7L2;nc|ENSG00000148737|Q9NQB0-16|TCF7L2;nc|ENSG00000148737|Q9NQB0-13|TCF7L2;nc|ENSG00000148737|Q9NQB0-2|TCF7L2;nc|ENSG00000148737|Q9NQB0-6|TCF7L2;nc|ENSG00000148737|Q9NQB0-4|TCF7L2;nc|ENSG00000148737|Q9NQB0-9|TCF7L2;nc|ENSG00000148737|Q9NQB0-12|TCF7L2;nc|ENSG00000148737|Q9NQB0-10|TCF7L2;nc|ENSG00000148737|Q9NQB0-15|TCF7L2;nc|ENSG00000148737|Q9NQB0-14|TCF7L2;nc|ENSG00000148737|Q9NQB0-17|TCF7L2 ENSG00000148737|ENST00000355995|TCF7L2 ENSG00000148737|ENST00000355995|TCF7L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.7552490234375 2 451.2531 900.491647 -0.15968 -7.2056E-05 3.2642 0.001473 3.1046 0.0014009 451.2548315852865 55.967 0.28547 55.967 55.853 56.138 0 24 15 2 0 0 0 8.7369 1 31149 31149 40.449 4.4044 1 4926300 73370 5962 49127 50183 85286 85286 0.03742078660570769 VTPVYVEPF 9 Unmodified _VTPVYVEPF_ 0 0 0 REV__ENSG00000143878|ENST00000272233|RHOB REV__ENSG00000143878|ENST00000272233|RHOB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.3170166015625 2 525.778951 1049.54335 0.84239 0.00044291 2.4216 0.0012732 3.264 0.0017161 525.7804701073322 99.568 0.21727 93.393 93.243 93.46 -6.1757 21 13 2 0 0 0 0.12183 1 66357 66357 34.102 3.8776 1 17542000 + 73371 20678 49128 50184 85287 85287 0.020558223544639986 VTPYMIFF 8 Unmodified _VTPYMIFF_ 0 0 0 nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;ENST00000458495.1_1_21:33213068-33213167:+|nuORF;ENST00000403538.1_1_6:144521586-144521685:-|nuORF nc|ENSG00000133112|P13693-2|TPT1 nc|ENSG00000133112|P13693-2|TPT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 509.7878112792969 2 509.259339 1016.50413 1.1698 0.00059575 0.47881 0.00024384 1.6487 0.00083959 509.2587404810176 63.968 0.28483 57.792 57.595 57.88 -6.1757 25 15 2 0 0 0 8.7369 1 41348 41348 14.582 5.2343 1 11718000 73372 4490 49129 50185 85288 85288 -0.003466012007379504 VTQASPIP 8 Unmodified _VTQASPIP_ 0 0 0 ENSG00000131398|ENST00000477616|KCNC3 ENSG00000131398|ENST00000477616|KCNC3 ENSG00000131398|ENST00000477616|KCNC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 813.4495849609375 1 812.451245 811.443968 0.17161 0.00013943 -0.59173 -0.00048076 -0.42012 -0.00034133 812.451529028596 74.814 0.45137 74.814 74.497 74.948 0 25 21 2 0 0 0 0.80992 1 41614 41614 0.69038 0 1 616180 73373 4322 49130 50186 85289 85289 0.030704244603612096 VTQDIPFY 8 Unmodified _VTQDIPFY_ 0 0 0 ENST00000469262.1_1_22:31501139-31501933:-|nuORF;ENSG00000198832|ENST00000400299|SELENOM ENST00000469262.1_1_22:31501139-31501933:-|nuORF ENST00000469262.1_1_22:31501139-31501933:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7471923828125 2 491.74765 981.480748 0.17499 8.6052E-05 -1.4913 -0.00073336 -1.3163 -0.00064731 491.7471321109146 79.565 0.26733 79.565 79.418 79.686 0 15 10 2 0 0 0 0.80624 1 44208 44208 2.8892 0 1 280750 73374 10166 49131 50187 85290 85290 -0.010733237137174001 VTQEIKPA 8 Unmodified _VTQEIKPA_ 0 0 0 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 ENSG00000095564|ENST00000265990|BTAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2561950683594 2 443.255643 884.496732 0.38403 0.00017022 1.0811 0.0004792 1.4651 0.00064943 443.2561330899619 18.013 0.19467 18.019 17.921 18.115 0.0060482 31 12 3 0 0 0 0.57045 1 9098 9098 28.487 3.0875 1 2542000 73375 1657 49132 50188 85291 85291 0.049863825231796 VTQEPEYYVGN 11 Unmodified _VTQEPEYYVGN_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.7982177734375 2 649.7986 1297.58265 0.49325 0.00032052 -1.0156 -0.00065996 -0.52239 -0.00033945 649.797915550749 47.928 0.30093 47.575 47.409 47.71 -0.3526 27 14 2 0 0 0 0.5229 1 25665 25665 15.248 1.3424 1 8447100 + 73376 24651 49133 50189 85292 85292 -0.05424122152635391 VTQEPPDSGEE 11 Unmodified _VTQEPPDSGEE_ 0 0 0 ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 ENSG00000105063|ENST00000412770|PPP6R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.256591796875 2 594.256765 1186.49898 0.49147 0.00029206 -0.83478 -0.00049607 -0.3433 -0.00020401 594.2566698630151 51.006 0.35372 51.006 50.813 51.167 0 75 19 5 0 0 0 0.62338 1 28054 28054 10.151 0.76745 1 103720000 73377 2273 49134 50190 85293 85293 -0.0868127832029586 VTQMSKKVH 9 Unmodified _VTQMSKKVH_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1988830566406 3 353.198943 1056.575 -0.26163 -9.2408E-05 0.26072 9.2086E-05 -0.00091055 -3.2161E-07 353.19925326281174 37.31 0.2891 37.331 37.153 37.442 0.021545 20 11 3 0 0 0 0.43515 1 19784 19784 10.8 0 1 2014400 73378 8505 49135 50191 85294 85294 0.0489749183677759 VTQMSKKVH 9 Unmodified _VTQMSKKVH_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 353.198943 1056.575 -0.10718 -3.7855E-05 1.3723 0.00048471 1.2652 0.00044685 353.1993789939316 37.62 0.25546 37.349 37.206 37.462 -0.27133 0.079275 0.0013648 NaN 10.8 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1035900 73379 8505 49135 50191 0.0489749183677759 VTQMSKKVH 9 Unmodified _VTQMSKKVH_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 353.198943 1056.575 2.4782 0.00087528 -0.76396 -0.00026983 1.7142 0.00060545 353.1984926827665 41.737 0.19014 37.129 37.03 37.22 -4.6079 -0.14077 -0.00089882 NaN 10.8 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6042700 73380 8505 49135 50191 0.0489749183677759 VTQNNFHNY 9 Unmodified _VTQNNFHNY_ 0 0 0 ENSG00000151655|ENST00000358415|ITIH2 ENSG00000151655|ENST00000358415|ITIH2 ENSG00000151655|ENST00000358415|ITIH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7603149414062 2 568.759612 1135.50467 0.78118 0.00044431 0.19514 0.00011099 0.97632 0.00055529 568.7596993450508 82.376 0.26505 81.881 81.767 82.032 -0.4952 17 10 2 0 0 0 0.43463 1 45091 45091 10.824 0.75 1 925390 73381 6132 49136 50192 85295 85295 -0.05766090227325549 VTQQLLRVL 9 Unmodified _VTQQLLRVL_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.3401489257812 2 535.340041 1068.66553 -0.25586 -0.00013697 0.59525 0.00031866 0.33938 0.00018169 535.3402137415994 21.838 0.13027 21.861 21.808 21.938 0.022896 8 5 2 0 0 0 0.60285 1 11128 11128 0 0 1 398720 + 73382 22192 49137 50193 85296 85296 0.1339428415672046 VTQSEPHLSF 10 Unmodified _VTQSEPHLSF_ 0 0 0 REV__ENSG00000103742|ENST00000352385|IGDCC4 REV__ENSG00000103742|ENST00000352385|IGDCC4 MSMS AL20221201_MKP_PDAC_01 4 382.5853881835938 3 382.192623 1143.55604 NaN NaN NaN NaN NaN NaN NaN 88.493 1 82.317 81.817 82.817 -6.1757 0 0 0 0.94014 1 58387 58387 3.3196 0 1 + 73383 18324 49138 50194 85297 85297 -0.00999766253312373 VTQYRWAK 8 Unmodified _VTQYRWAK_ 0 0 0 nc|ENSG00000149571|Q8IZU9-2|KIRREL3;ENSG00000149571|ENST00000525144|KIRREL3 nc|ENSG00000149571|Q8IZU9-2|KIRREL3 nc|ENSG00000149571|Q8IZU9-2|KIRREL3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1950378417969 3 351.194298 1050.56106 NaN NaN NaN NaN NaN NaN NaN 33.531 1 33.531 33.031 34.031 0 0 0 0 0.93587 1 17594 17594 10.074 2.465 1 73384 6021 49139 50195 85298 85298 0.03780582399986088 VTRAAAAKT 9 Unmodified _VTRAAAAKT_ 0 0 0 ENST00000564546.5_1_16:30076568-30077015:+|nuORF ENST00000564546.5_1_16:30076568-30077015:+|nuORF ENST00000564546.5_1_16:30076568-30077015:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2639465332031 2 444.766709 887.518865 -0.27089 -0.00012048 -1.6745 -0.00074478 -1.9454 -0.00086526 444.76590248591816 103.32 0.10035 103.27 103.21 103.31 -0.047928 6 3 2 0 0 0 0.2191 1 57382 57382 0 0 1 12341000 73385 15388 49140 50196 85299 85299 0.07060606991592522 VTRCIHQLS 9 Unmodified _VTRCIHQLS_ 0 0 0 REV__ENSG00000180008|ENST00000555846|SOCS4 REV__ENSG00000180008|ENST00000555846|SOCS4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8455200195312 3 352.858809 1055.5546 1.4909 0.00052606 -0.74815 -0.00026399 0.7427 0.00026207 352.8587282611204 33.244 0.30602 29.351 29.205 29.511 -3.8929 22 18 2 0 0 0 0.20139 1 19110 19110 4.1895 0 1 17563000 + 73386 23134 49141 50197 85300 85300 0.029043211769703703 VTRDPAERPF 10 Unmodified _VTRDPAERPF_ 0 0 0 REV__ENSG00000228672|ENST00000434752|PROB1 REV__ENSG00000228672|ENST00000434752|PROB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.31396484375 2 594.312012 1186.60947 NaN NaN NaN NaN NaN NaN NaN 55.59 1 55.521 55.021 56.021 -0.068737 0 0 0 0.91523 1 30215 30215 7.2892 1.9923 1 + 73387 24400 49142 50198 85301 85301 0.023630312492059602 VTRFVSYTP 9 Unmodified _VTRFVSYTP_ 0 0 0 REV__ENSG00000116544|ENST00000373347|DLGAP3 REV__ENSG00000116544|ENST00000373347|DLGAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.1941528320312 3 357.194075 1068.5604 NaN NaN NaN NaN NaN NaN NaN 90.131 1 90.173 89.673 90.673 0.042175 0 0 0 0.83329 1 50136 50136 2.086 0.60411 1 + 73388 19046 49143 50199 85302 85302 0.028857429602794582 VTRHGVGGG 9 Unmodified _VTRHGVGGG_ 0 0 0 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 REV__nc|ENSG00000101596|A6NHR9-2|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2281494140625 2 420.227751 838.440949 0.13805 5.8012E-05 1.0246 0.00043058 1.1627 0.00048859 420.2281126134602 78.839 0.401 78.353 78.084 78.485 -0.48596 39 15 3 0 0 0 0.62242 1 43242 43242 0 0 1 2742400 + 73389 18186 49144 50200 85303 85303 0.015265941262441629 VTRISILL 8 Unmodified _VTRISILL_ 0 0 0 ENSG00000185442|ENST00000327355|FAM174B ENSG00000185442|ENST00000327355|FAM174B ENSG00000185442|ENST00000327355|FAM174B MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.6062622070312 1 914.603329 913.596052 1.1791 0.0010784 0.32187 0.00029439 1.5009 0.0013728 914.6035122027127 108.18 0.4584 102 101.74 102.2 -6.1757 137 92 2 0 0 0 0.80975 3 72200 72200;72308;72421 0.79363 0 1 2482900 73390 9371 49145 50201 85304;85305;85306 85304 0.1357982520794394 VTRLTHYPL 9 Unmodified _VTRLTHYPL_ 0 0 0 REV__ENSG00000152207|ENST00000682523|CYSLTR2 REV__ENSG00000152207|ENST00000682523|CYSLTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2147216796875 3 367.213469 1098.61858 1.8489 0.00067896 0.00095894 3.5214E-07 1.8499 0.00067931 367.21320449936593 37.431 0.82188 33.148 32.765 33.587 -4.2835 186 49 7 0 0 0 0.38785 1 22053 22053 13.042 0 1 271140000 + 73391 21106 49146 50202 85307 85307 0.07321424605561333 VTRLWDRL 8 Unmodified _VTRLWDRL_ 0 0 0 REV__ENSG00000118242|ENST00000263268|MREG REV__ENSG00000118242|ENST00000263268|MREG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.3145141601562 2 529.808908 1057.60326 0.60048 0.00031814 -0.87301 -0.00046253 -0.27253 -0.00014439 529.8083568062744 73.069 0.50893 72.594 72.295 72.804 -0.47588 73 22 4 0 0 0 0.80624 1 39843 39843 2.8892 0 1 62645000 + 73392 19140 49147 50203 85308 85308 0.07676557808349571 VTRMSFYL 8 Unmodified _VTRMSFYL_ 0 0 0 nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF nc|ENSG00000176225|Q86VV8-3|RTTN nc|ENSG00000176225|Q86VV8-3|RTTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7200927734375 2 508.76532 1015.51609 0.59357 0.00030199 0.69622 0.00035421 1.2898 0.0006562 508.7655248403761 53.028 0.24615 53.028 52.92 53.166 0 17 11 2 0 0 0 8.7369 1 29342 29342 10.183 0 1 1481700 73393 8577 49148 50204 85309 85309 0.008950155424486184 VTRPVSPCKL 10 Unmodified _VTRPVSPCKL_ 0 0 0 ENST00000435806.2_1_X:15699193-15699304:+|nuORF ENST00000435806.2_1_X:15699193-15699304:+|nuORF ENST00000435806.2_1_X:15699193-15699304:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2153930664062 3 367.214593 1098.62195 1.8489 0.00067896 -3.0588 -0.0011233 -1.2099 -0.0004443 367.21320449936593 37.431 0.82188 33.148 32.765 33.587 -4.2835 186 49 7 0 0 0 0.64628 1 21883 21883 5.0475 0 1 271140000 73394 13320 49149 50205 85310 85310 0.07658351387908624 VTRRKRSQ 8 Unmodified _VTRRKRSQ_ 0 0 0 nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 nc|ENSG00000102081|Q06787-11|FMR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.815185546875 2 515.815056 1029.61556 NaN NaN NaN NaN NaN NaN NaN 94.399 1 93.978 93.478 94.478 -0.42044 0 0 0 0.97444 1 51575 51575 0.79363 0 1 73395 16093 49150 50206 85311 85311 0.10193594271413531 VTRRTKDAL 9 Unmodified _VTRRTKDAL_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.8590698242188 3 353.88049 1058.61964 1.4035 0.00049666 -0.85333 -0.00030198 0.55015 0.00019469 353.88036766398847 18.393 0.21299 15.772 15.672 15.885 -2.6215 35 19 2 0 0 0 0.21352 1 9707 9707 6.1918 0 1 1866500 + 73396 17692 49151 50207 85312 85312 0.09267638974461079 VTRSLANKV 9 Unmodified _VTRSLANKV_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3017578125 2 494.300916 986.587279 0.13183 6.5164E-05 0.33846 0.0001673 0.47029 0.00023246 494.30095249317145 87.545 0.54933 87.598 87.339 87.888 0.053352 80 25 4 0 0 0 0.5029 1 48575 48575 7.2892 2.5332 1 450640000 + 73397 22510 49152 50208 85313 85313 0.09344851571461277 VTRSLANKV 9 Unmodified _VTRSLANKV_ 0 0 0 REV__ENSG00000170790|ENST00000641461|OR10A2 REV__ENSG00000170790|ENST00000641461|OR10A2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 494.300916 986.587279 0.64968 0.00032114 -0.045168 -2.2327E-05 0.60451 0.00029881 494.3008605881484 88.025 0.34064 87.521 87.36 87.701 -0.50423 0.027907 -0.00029839 NaN 7.2892 29 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1953700 + 73398 22510 49152 50208 0.09344851571461277 VTRSTFKF 8 Unmodified _VTRSTFKF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 985.5640258789062 1 985.546542 984.539266 0.50385 0.00049657 0.97089 0.00095686 1.4747 0.0014534 985.5495567687309 28.992 0.065067 28.93 28.876 28.941 -0.062159 4 2 2 0 0 0 0.80975 1 14966 14966 0.79363 0 1 1029900 73399 6400 49153 50209 85314 85314 0.04637777651430497 VTRTVTGLTK 10 Unmodified _VTRTVTGLTK_ 0 0 0 REV__ENST00000601803.5_1_19:19032626-19032992:+|nuORF REV__ENST00000601803.5_1_19:19032626-19032992:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3274536132812 2 538.327131 1074.63971 1.5461 0.0008323 -1.0135 -0.00054561 0.53257 0.0002867 538.3264147318213 92.503 0.66565 92.533 92.259 92.925 0.030197 103 25 5 0 0 0 0.72607 1 51557 51557 0 0 1 397650000 + 73400 29259 49154 50210 85315 85315 0.10537389914384221 VTSAGLVGVAF 11 Unmodified _VTSAGLVGVAF_ 0 0 0 ENST00000554628.5_1_14:89016776-89017810:-|nuORF ENST00000554628.5_1_14:89016776-89017810:-|nuORF ENST00000554628.5_1_14:89016776-89017810:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2634582519531 2 510.78985 1019.56515 0.40242 0.00020555 -0.86083 -0.00043971 -0.45841 -0.00023415 510.7905276712491 31.373 0.1861 31.373 31.255 31.441 0 11 8 2 0 0 0 0.20998 1 16342 16342 27.629 4.8925 1 634450 73401 15215 49155 50211 85316 85316 0.056146271030456774 VTSAIVVIT 9 Unmodified _VTSAIVVIT_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 902.5545654296875 1 902.55571 901.548434 0.91706 0.0008277 -0.15907 -0.00014357 0.75799 0.00068413 902.5557888450734 83.664 0.45222 77.488 77.287 77.74 -6.1757 30 23 2 0 0 0 0.019303 1 54973 54973 64.236 3.8468 1 6407600 73402 3607 49156 50212 85317 85317 0.09372126217078858 VTSAQKHVL 9 Unmodified _VTSAQKHVL_ 0 0 0 ENST00000598707.5_1_19:39306922-39322412:-|nuORF;ENSG00000104823|ENST00000221418|ECH1;ENST00000596118.1_1_19:39321764-39322031:-|nuORF;ENST00000600178.5_1_19:39307991-39322412:-|nuORF ENST00000598707.5_1_19:39306922-39322412:-|nuORF ENST00000598707.5_1_19:39306922-39322412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.7885131835938 2 491.787641 981.56073 NaN NaN NaN NaN NaN NaN NaN 31.496 1 27.8 27.3 28.3 -3.6958 0 0 0 0.02218 1 17843 17843 75.761 19.584 1 73403 2239 49157 50213 85318 85318 0.06921162680123416 VTSAVHFR 8 Unmodified _VTSAVHFR_ 0 0 0 REV__nc|ENSG00000114626|Q969K4-2|ABTB1 REV__nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.75439453125 2 458.753601 915.49265 0.51258 0.00023515 1.4434 0.00066219 1.956 0.00089734 458.75412923046036 62.729 0.63953 62.707 62.525 63.165 -0.021614 70 32 3 0 0 0 0.80311 1 34370 34370 4.756 0 1 13569000 + 73404 18922 49158 50214 85319 85319 0.03152337820131379 VTSCLRKKRK 10 Unmodified _VTSCLRKKRK_ 0 0 0 ENSG00000141867|ENST00000679869|BRD4;nc|ENSG00000141867|O60885-2|BRD4;nc|ENSG00000141867|O60885-3|BRD4;ENST00000595926.1_1_19:15364960-15366165:-|nuORF ENSG00000141867|ENST00000679869|BRD4 ENSG00000141867|ENST00000679869|BRD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.67578125 2 609.876799 1217.73905 NaN NaN NaN NaN NaN NaN NaN 17.357 1 17.371 16.871 17.871 0.013865 0 0 0 1.0061 1 8624 8624 0 0 1 73405 5378 49159 50215 85320 85320 0.1388850932751211 VTSCSCDA 8 Unmodified _VTSCSCDA_ 0 0 0 REV__ENST00000588439.1_1_19:36395473-36398510:-|nuORF REV__ENST00000588439.1_1_19:36395473-36398510:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.143798828125 2 393.143846 784.27314 0.45556 0.0001791 -0.35247 -0.00013857 0.10309 4.0528E-05 393.1435458324604 64.862 0.36546 64.377 64.189 64.554 -0.48512 25 16 2 0 0 0 0.80676 1 35371 35371 2.5775 0 1 1053200 + 73406 29124 49160 50216 85321 85321 -0.12762597244909557 VTSDDYSY 8 Unmodified _VTSDDYSY_ 0 0 0 REV__nc|ENSG00000154914|Q70EL4-2|USP43 REV__nc|ENSG00000154914|Q70EL4-2|USP43 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.1941528320312 2 475.192905 948.371257 NaN NaN NaN NaN NaN NaN NaN 49.356 1 49.356 48.856 49.856 0 0 0 0 0.97348 1 27155 27155 5.7604 0.52976 1 + 73407 21251 49161 50217 85322 85322 -0.10499374123719463 VTSDIKKKLK 10 Unmodified _VTSDIKKKLK_ 0 0 0 REV__ENSG00000133640|ENST00000393217|LRRIQ1 REV__ENSG00000133640|ENST00000393217|LRRIQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.374755859375 2 580.374081 1158.73361 1.5722 0.00091248 -0.7692 -0.00044642 0.80303 0.00046606 580.3740867048663 103.41 0.13601 97.233 97.183 97.319 -6.1757 39 22 3 0 0 0 0.71276 1 69324 69324 1.4819 0 1 10010000 + 73408 19928 49162 50218 85323 85323 0.16059109016691764 VTSEEYLAF 9 Unmodified _VTSEEYLAF_ 0 0 0 ENSG00000123594|ENST00000380622|ATXN3L ENSG00000123594|ENST00000380622|ATXN3L ENSG00000123594|ENST00000380622|ATXN3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7566528320312 2 529.755672 1057.49679 0.61503 0.00032582 3.3997 0.001801 4.0147 0.0021268 529.7570835037687 73.42 0.23978 72.944 72.826 73.066 -0.47588 18 10 2 0 0 0 0.39863 1 40207 40207 12.532 0 1 695420 73409 3719 49163 50219 85324 85324 -0.029656622674792743 VTSFAAINKFQ 11 Unmodified _VTSFAAINKFQ_ 0 0 0 nc|ENSG00000008382|Q8N594-2|MPND;nc|ENSG00000008382|Q8N594|MPND;ENSG00000008382|ENST00000599840|MPND nc|ENSG00000008382|Q8N594-2|MPND nc|ENSG00000008382|Q8N594-2|MPND MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.3317260742188 2 613.332413 1224.65027 1.0495 0.00064371 0.76003 0.00046615 1.8096 0.0011099 613.332847141656 87.77 1.0956 81.595 80.843 81.939 -6.1757 221 60 5 0 0 0 0.28407 1 57425 57425 27.629 0.54043 1 567730000 73410 388 49164 50220 85325 85325 0.04693372568817722 VTSGVVTFT 9 Unmodified _VTSGVVTFT_ 0 0 0 ENSG00000101000|ENST00000216968|PROCR ENSG00000101000|ENST00000216968|PROCR ENSG00000101000|ENST00000216968|PROCR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 912.4993896484375 1 910.488024 909.480748 0.063067 5.7422E-05 0.48196 0.00043882 0.54502 0.00049624 910.4882840173764 68.414 0.33192 67.933 67.764 68.096 -0.48071 29 14 3 0 0 0 0.41742 1 37380 37380 11.64 0 1 3661200 73411 1902 49165 50221 85326 85326 0.02238676286287955 VTSHKKPSV 9 Unmodified _VTSHKKPSV_ 0 0 0 REV__nc|ENSG00000143674|Q5TCX8-3|MAP3K21 REV__nc|ENSG00000143674|Q5TCX8-3|MAP3K21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.787841796875 2 491.787641 981.56073 1.0397 0.00051132 -0.39937 -0.00019641 0.64034 0.00031491 491.787517374614 19.649 0.2602 16.992 16.873 17.133 -2.6564 24 18 2 0 0 0 0.10247 1 10428 10428 32.786 2.1491 1 1869700 + 73412 20662 49166 50222 85327 85327 0.06921162680134785 VTSIIIVLY 9 Unmodified _VTSIIIVLY_ 0 0 0 REV__nc|ENSG00000073146|Q9BXT6-2|MOV10L1 REV__nc|ENSG00000073146|Q9BXT6-2|MOV10L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.8201599121094 2 510.820618 1019.62668 0.7566 0.00038649 -0.18595 -9.4988E-05 0.57065 0.0002915 510.8202777698768 100.5 0.11991 94.321 94.254 94.374 -6.1757 12 6 2 0 0 0 0.026094 1 67238 67238 57.471 3.8958 1 35990000 + 73413 17532 49167 50223 85328 85328 0.11765558802312626 VTSIKKKK 8 Unmodified _VTSIKKKK_ 0 0 0 REV__ENSG00000121314|ENST00000240615|TAS2R8 REV__ENSG00000121314|ENST00000240615|TAS2R8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 932.0934448242188 1 931.629878 930.622602 3.7728 0.0035148 -1.0011 -0.00093262 2.7717 0.0025822 931.6301475603087 98.035 0.089218 98.017 97.955 98.045 -0.018188 4 2 2 0 0 0 8.7369 1 54439 54439 0.69038 0 1 1137400 + 73414 19287 49168 50224 85329 85329 0.1545151409926575 VTSLPPSQ 8 Unmodified _VTSLPPSQ_ 0 0 0 ENSG00000163825|ENST00000296142|RTP3 ENSG00000163825|ENST00000296142|RTP3 ENSG00000163825|ENST00000296142|RTP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 828.4468383789062 1 828.44616 827.438883 0.79537 0.00065892 0.87299 0.00072322 1.6684 0.0013821 828.4457717099485 81.952 0.38326 75.776 75.602 75.986 -6.1757 32 21 3 0 0 0 0.17097 2 53742 53742;53872 81.613 0 1 8900200 73415 7080 49169 50225 85330;85331 85330 0.018261205977637474 VTSLVVSLINN 11 Unmodified _VTSLVVSLINN_ 0 0 0 REV__ENSG00000125255|ENST00000245312|SLC10A2 REV__ENSG00000125255|ENST00000245312|SLC10A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3087158203125 2 579.840071 1157.66559 0.48377 0.00028051 0.08869 5.1426E-05 0.57246 0.00033193 579.8400955129543 67.378 0.22703 66.895 66.78 67.007 -0.48219 14 9 2 0 0 0 0.29923 1 36838 36838 7.609 4.0125 1 620320 + 73416 19483 49170 50226 85332 85332 0.09306239366060254 VTSNAALTLR 10 Unmodified _VTSNAALTLR_ 0 0 0 ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.304443359375 2 523.303655 1044.59276 0.3298 0.00017258 -0.12951 -6.7775E-05 0.20028 0.00010481 523.3035998656626 91.671 0.42733 91.19 90.902 91.33 -0.48092 48 27 2 0 0 0 0.72607 1 49983 49983 0 0 1 1581400 73417 6346 49171 50227 85333 85333 0.07224530363259873 VTSNRSEQSI 10 Unmodified _VTSNRSEQSI_ 0 0 0 REV__ENSG00000174718|ENST00000312561|RESF1 REV__ENSG00000174718|ENST00000312561|RESF1 MSMS AL20221201_MKP_PDAC_01 4 374.1934814453125 3 374.191282 1119.55202 NaN NaN NaN NaN NaN NaN NaN 50.353 1 44.814 44.314 45.314 -5.5391 0 0 0 0.92825 1 31574 31574 3.5871 0 1 + 73418 22811 49172 50228 85334 85334 -0.0029785574699872086 VTSRARSVS 9 Unmodified _VTSRARSVS_ 0 0 0 ENSG00000139405|ENST00000548278|RITA1;nc|ENSG00000139405|Q96K30-3|RITA1 ENSG00000139405|ENST00000548278|RITA1 ENSG00000139405|ENST00000548278|RITA1 MSMS AL20221201_MKP_PDAC_01 4 481.7747802734375 2 481.772522 961.530492 NaN NaN NaN NaN NaN NaN NaN 17.118 1 14.531 14.031 15.031 -2.5866 0 0 0 0.58748 1 8923 8923 13.042 1.4022 1 73419 5154 49173 50229 85335 85335 0.048188040149511835 VTSRPDCY 8 Unmodified _VTSRPDCY_ 0 0 0 ENST00000544268.5_1_12:133418142-133424788:-|nuORF;ENST00000545046.5_1_12:133418142-133423791:-|nuORF;nc|ENSG00000072609|Q96EP1-5|CHFR;nc|ENSG00000072609|Q96EP1-3|CHFR;ENSG00000072609|ENST00000450056|CHFR;nc|ENSG00000072609|Q96EP1-4|CHFR;nc|ENSG00000072609|Q96EP1|CHFR ENST00000544268.5_1_12:133418142-133424788:-|nuORF ENST00000544268.5_1_12:133418142-133424788:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7123718261719 2 470.713285 939.412016 0.32056 0.00015089 -2.1782 -0.0010253 -1.8576 -0.0008744 470.712257577887 37.669 0.2367 37.669 37.549 37.786 0 16 11 2 0 0 0 0.78849 1 20092 20092 9.3474 3.587 1 1425600 73420 1088 49174 50230 85336 85336 -0.06011311285078591 VTSRYRIN 8 Unmodified _VTSRYRIN_ 0 0 0 ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26 ENSG00000107890|ENST00000376087|ANKRD26 ENSG00000107890|ENST00000376087|ANKRD26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7820739746094 2 504.78289 1007.55123 0.16656 8.4077E-05 0.14304 7.2206E-05 0.3096 0.00015628 504.78292525293796 29.032 0.20533 28.97 28.856 29.061 -0.062159 16 8 3 0 0 0 0.63229 1 15007 15007 23.148 3.7094 1 4689700 73421 2528 49175 50231 85337 85337 0.04775394394596333 VTSSIWADVF 10 Unmodified _VTSSIWADVF_ 0 0 0 REV__ENSG00000197938|ENST00000355273|OR5H2 REV__ENSG00000197938|ENST00000355273|OR5H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.78564453125 2 562.784764 1123.55498 0.76134 0.00042847 1.3644 0.00076788 2.1258 0.0011963 562.7853488645156 62.053 0.23481 61.566 61.469 61.704 -0.48764 22 10 3 0 0 0 0.50944 1 33806 33806 15.847 1.9411 1 2556800 + 73422 23970 49176 50232 85338 85338 -0.0018598062220007705 VTSSLAPP 8 Unmodified _VTSSLAPP_ 0 0 0 nc|ENSG00000154025|A0PJK1-5|SLC5A10;nc|ENSG00000154025|A0PJK1-3|SLC5A10;nc|ENSG00000154025|A0PJK1-2|SLC5A10;ENSG00000154025|ENST00000395645|SLC5A10;nc|ENSG00000154025|A0PJK1-4|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2172546386719 2 386.215986 770.417419 -0.037938 -1.4652E-05 2.8665 0.0011071 2.8285 0.0010924 386.21697019234483 34.848 0.50031 34.875 34.753 35.253 0.027401 31 22 2 0 0 0 0.80975 1 18450 18450 0.79363 0 1 941990 73423 6290 49177 50233 85339 85339 0.02302735569048764 VTSSPTVLY 9 Unmodified _VTSSPTVLY_ 0 0 0 ENST00000451571.1_1_9:79607732-79607996:+|nuORF ENST00000451571.1_1_9:79607732-79607996:+|nuORF ENST00000451571.1_1_9:79607732-79607996:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2378234863281 2 483.760758 965.506963 -0.36471 -0.00017643 0.72631 0.00035136 0.3616 0.00017493 483.7611379700612 48.533 0.20442 48.533 48.433 48.638 0 13 9 2 0 0 0 0.11012 1 26611 26611 36.044 22.536 1 1677200 73424 13524 49178 50234 85340 85340 0.022829454577504293 VTSVLLCFIF 10 Unmodified _VTSVLLCFIF_ 0 0 0 ENSG00000108622|ENST00000579788|ICAM2 ENSG00000108622|ENST00000579788|ICAM2 ENSG00000108622|ENST00000579788|ICAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.3207397460938 2 571.319928 1140.6253 -0.038537 -2.2017E-05 1.5049 0.00085979 1.4664 0.00083778 571.3208650884294 33.075 0.20746 33.104 32.979 33.186 0.029747 18 8 3 0 0 0 0.14917 1 17399 17399 39.957 0 1 2253300 73425 2591 49179 50235 85341 85341 0.0606160144191108 VTSVLLCFIF 10 Unmodified _VTSVLLCFIF_ 0 0 0 ENSG00000108622|ENST00000579788|ICAM2 ENSG00000108622|ENST00000579788|ICAM2 ENSG00000108622|ENST00000579788|ICAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.3192749023438 2 571.319928 1140.6253 0.6737 0.0003849 -0.46644 -0.00026648 0.20726 0.00011841 571.3196927460581 36.514 0.24941 32.231 32.173 32.422 -4.2835 17 15 2 0 0 0 0.14917 1 21377 21377 39.957 1.7818 1 11691000 73426 2591 49179 50235 85342 85342 0.0606160144191108 VTTAYNSCAS 10 Unmodified _VTTAYNSCAS_ 0 0 0 REV__nc|ENSG00000182541|P53671-3|LIMK2 REV__nc|ENSG00000182541|P53671-3|LIMK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7200927734375 2 508.721307 1015.42806 NaN NaN NaN NaN NaN NaN NaN 52.985 1 52.985 52.485 53.485 0 0 0 0 0.94014 1 29342 29342 6.2058 0 1 + 73427 29836 49180 50236 85343 85343 -0.07903649838840465 VTTFLAASTH 10 Unmodified _VTTFLAASTH_ 0 0 0 ENSG00000174579|ENST00000309993|MSL2;nc|ENSG00000174579|Q9HCI7-2|MSL2 ENSG00000174579|ENST00000309993|MSL2 ENSG00000174579|ENST00000309993|MSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2765502929688 2 524.277106 1046.53966 -0.14787 -7.7522E-05 0.24167 0.0001267 0.093805 4.918E-05 524.2774983580204 26.575 0.3967 26.575 26.386 26.782 0 41 18 3 0 0 0 0.67033 1 13663 13663 6.2058 1.8765 1 2508800 73428 8437 49181 50237 85344 85344 0.01825152580613576 VTTHLFLQI 9 Unmodified _VTTHLFLQI_ 0 0 0 ENST00000367385.8_1_1:198266329-198288554:+|nuORF ENST00000367385.8_1_1:198266329-198288554:+|nuORF ENST00000367385.8_1_1:198266329-198288554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.3139038085938 2 536.313492 1070.61243 0.027249 1.4614E-05 0.90523 0.00048549 0.93248 0.0005001 536.3140157635534 31.747 0.46341 31.617 31.354 31.818 -0.12915 31 18 2 0 0 0 0.41742 1 16456 16456 11.64 0 1 2157200 73429 12234 49182 50238 85345 85345 0.07994906374028687 VTTHLFLQI 9 Unmodified _VTTHLFLQI_ 0 0 0 ENST00000367385.8_1_1:198266329-198288554:+|nuORF ENST00000367385.8_1_1:198266329-198288554:+|nuORF ENST00000367385.8_1_1:198266329-198288554:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 536.313492 1070.61243 0.027249 1.4614E-05 0.90523 0.00048549 0.93248 0.0005001 536.3140157635534 31.747 0.46341 31.617 31.354 31.818 -0.12915 0 0 NaN 11.64 31 18 2 NaN NaN NaN NaN 0 NaN NaN 0 2157200 73430 12234 49182 50238 0.07994906374028687 VTTIDPRWL 9 Unmodified _VTTIDPRWL_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5418395996094 3 367.541475 1099.60259 0.34139 0.00012547 0.30423 0.00011182 0.64562 0.00023729 367.5416238820637 40.18 0.38304 39.883 39.69 40.073 -0.29716 51 17 4 0 0 0 0.32871 1 21191 21191 10.8 0 1 13137000 73431 960 49183 50239 85346 85346 0.05677718368656315 VTTISLLLLA 10 Unmodified _VTTISLLLLA_ 0 0 0 ENST00000250457.7_1_14:34394881-34395019:-|nuORF ENST00000250457.7_1_14:34394881-34395019:-|nuORF ENST00000250457.7_1_14:34394881-34395019:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 522.3395385742188 2 522.339175 1042.6638 NaN NaN NaN NaN NaN NaN NaN 107.84 1 101.66 101.16 102.16 -6.1757 0 0 0 1.0061 1 72100 72100 0 0 1 73432 11139 49184 50240 85347 85347 0.14417230348112753 VTTMKSSA 8 Unmodified _VTTMKSSA_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 412.714111328125 2 412.712753 823.410954 0.66182 0.00027314 -0.07828 -3.2307E-05 0.58354 0.00024084 412.71268245201884 68.012 0.42851 67.53 67.275 67.703 -0.48218 45 19 3 0 0 0 0.79887 1 37087 37087 7.2892 0 1 11769000 + 73433 24583 49185 50241 85348 85348 -0.007815256539743132 VTTMKSSA 8 Unmodified _VTTMKSSA_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MSMS AL20221201_MKP_PDAC_01 4 412.7135620117188 2 412.712753 823.410954 NaN NaN NaN NaN NaN NaN NaN 74.433 1 68.258 67.758 68.758 -6.1757 0 0 0 0.96606 1 48661 48661 7.2892 0 1 + 73434 24583 49185 50241 85349 85349 -0.007815256539743132 VTTMKSSA 8 Unmodified _VTTMKSSA_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 412.712753 823.410954 0.17698 7.304E-05 0.55631 0.0002296 0.73329 0.00030264 412.71293805902496 67.55 0.30874 67.55 67.366 67.675 0 0.010042 0.00025621 NaN 7.2892 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3313500 + 73435 24583 49185 50241 -0.007815256539743132 VTTMKSSA 8 Unmodified _VTTMKSSA_ 0 0 0 REV__ENSG00000261272|ENST00000561890|MUC22 REV__ENSG00000261272|ENST00000561890|MUC22 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 412.712753 823.410954 0.66182 0.00027314 -0.07828 -3.2307E-05 0.58354 0.00024084 412.71268245201884 68.012 0.42851 67.53 67.275 67.703 -0.48218 -0.010042 -0.00026759 NaN 7.2892 45 19 3 NaN NaN NaN NaN 0 NaN NaN 0 11769000 + 73436 24583 49185 50241 -0.007815256539743132 VTTPALEPL 9 Unmodified _VTTPALEPL_ 0 0 0 REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7721557617188 2 470.771126 939.527698 0.82017 0.00038611 2.1067 0.00099178 2.9269 0.0013779 470.7718854118655 36.436 0.1968 36.436 36.33 36.527 0 21 9 3 0 0 0 0.41742 1 19322 19322 11.64 0 1 3288800 + 73437 27036 49186 50242 85350 85350 0.05551535837423671 VTTPALEPL 9 Unmodified _VTTPALEPL_ 0 0 0 REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.771126 939.527698 0.82017 0.00038611 2.1067 0.00099178 2.9269 0.0013779 470.7718854118655 36.436 0.1968 36.436 36.33 36.527 0 -0.018879 -0.0010789 NaN 11.64 21 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3288800 + 73438 27036 49186 50242 0.05551535837423671 VTTPALEPL 9 Unmodified _VTTPALEPL_ 0 0 0 REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 470.771126 939.527698 -0.34395 -0.00016192 4.3229 0.0020351 3.979 0.0018732 470.7729641182665 36.737 0.1711 36.487 36.383 36.554 -0.2497 0.032287 0.0010077 NaN 11.64 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1836200 + 73439 27036 49186 50242 0.05551535837423671 VTTPALEPL 9 Unmodified _VTTPALEPL_ 0 0 0 REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF REV__ENST00000444125.1_1_9:132099225-132104149:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 470.771126 939.527698 -0.32981 -0.00015527 3.3196 0.0015628 2.9898 0.0014075 470.7726372630682 36.42 0.24615 36.441 36.268 36.515 0.021542 -0.013409 6.305E-05 NaN 11.64 29 10 4 NaN NaN NaN NaN 0 NaN NaN 0 11425000 + 73440 27036 49186 50242 0.05551535837423671 VTTPTVSP 8 Unmodified _VTTPTVSP_ 0 0 0 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.2224731445312 2 401.221268 800.427984 0.37719 0.00015134 3.0302 0.0012158 3.4074 0.0013671 401.22242967088397 50.91 0.15632 50.91 50.821 50.978 0 12 8 2 0 0 0 0.80143 1 28096 28096 5.7604 0 1 1561700 + 73441 18923 49187 50243 85351 85351 0.01978718223483611 VTTPTVSP 8 Unmodified _VTTPTVSP_ 0 0 0 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 REV__nc|ENSG00000114631|Q9NZ53-2|PODXL2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 401.221268 800.427984 0.37719 0.00015134 3.0302 0.0012158 3.4074 0.0013671 401.22242967088397 50.91 0.15632 50.91 50.821 50.978 0 0.0094206 0.000183 NaN 5.7604 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1561700 + 73442 18923 49187 50243 0.01978718223483611 VTTSLFVDL 9 Unmodified _VTTSLFVDL_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7763977050781 2 497.776408 993.538263 0.99586 0.00049571 -0.035825 -1.7833E-05 0.96003 0.00047788 497.7764394402077 92.4 0.37807 86.224 85.986 86.364 -6.1757 34 22 2 0 0 0 0.30562 1 61202 61202 16.942 2.3606 1 11287000 + 73443 21625 49188 50244 85352 85352 0.04123518491860523 VTTTRLVN 8 Unmodified _VTTTRLVN_ 0 0 0 nc|ENSG00000165304|Q14680-2|MELK;nc|ENSG00000165304|Q14680-8|MELK;nc|ENSG00000165304|Q14680-7|MELK;ENSG00000165304|ENST00000298048|MELK;nc|ENSG00000165304|Q14680-4|MELK;nc|ENSG00000165304|Q14680-5|MELK;nc|ENSG00000165304|Q14680-6|MELK;nc|ENSG00000165304|Q14680-3|MELK nc|ENSG00000165304|Q14680-2|MELK nc|ENSG00000165304|Q14680-2|MELK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2670593261719 2 452.266542 902.51853 NaN NaN NaN NaN NaN NaN NaN 84.617 1 84.617 84.117 85.117 0 0 0 0 0.97444 1 46907 46907 0.69038 0 1 73444 7323 49189 50245 85353 85353 0.06337187271753919 VTTVVNPKY 9 Unmodified _VTTVVNPKY_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7903442382812 2 510.78985 1019.56515 0.029613 1.5126E-05 0.66137 0.00033782 0.69099 0.00035295 510.7899842704996 31.358 0.14569 31.255 31.188 31.333 -0.10269 8 5 2 0 0 0 0.10247 1 16317 16317 32.786 13.529 1 1269700 73445 6050 49190 50246 85354 85354 0.056146271030456774 VTTVVNPKY 9 Unmodified _VTTVVNPKY_ 0 0 0 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 ENSG00000150093|ENST00000302278|ITGB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7894897460938 2 510.78985 1019.56515 1.1155 0.00056979 0.29041 0.00014834 1.4059 0.00071813 510.79026611114347 35.961 0.37892 31.769 31.598 31.977 -4.1928 42 23 2 0 0 0 0.0086722 1 21015 21015 88.954 54.552 1 10209000 73446 6050 49190 50246 85355 85355 0.056146271030456774 VTTWMFIRSYM 11 Unmodified _VTTWMFIRSYM_ 0 0 0 ENSG00000198643|ENST00000358781|FAM3D ENSG00000198643|ENST00000358781|FAM3D ENSG00000198643|ENST00000358781|FAM3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 717.8482055664062 2 717.849058 1433.68356 0.1253 8.9947E-05 -0.85128 -0.00061109 -0.72598 -0.00052114 718.3498980701977 58.296 0.49109 57.805 57.491 57.982 -0.49079 52 23 4 0 0 0 0.63851 1 31652 31652 9.3831 1.2276 1 8138600 73447 10116 49191 50247 85356 85356 -0.01593084975115744 VTVAFEEAV 9 Unmodified _VTVAFEEAV_ 0 0 0 ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B ENSG00000123570|ENST00000243298|RAB9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.751220703125 2 482.752933 963.491313 0.36766 0.00017749 -2.5363 -0.0012244 -2.1687 -0.0010469 482.7516314602061 69.206 0.31572 69.206 69.084 69.4 0 20 13 2 0 0 0 0.23158 1 38560 38560 20.454 0 1 876600 73448 3717 49192 50248 85357 85357 0.00810658940713438 VTVCGLAA 8 Unmodified _VTVCGLAA_ 0 0 0 ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.1991577148438 2 367.199282 732.384011 0.3502 0.00012859 -0.42529 -0.00015616 -0.075083 -2.757E-05 367.1990398057322 49.01 0.275 48.638 48.48 48.755 -0.37172 24 13 2 0 0 0 0.80975 1 26319 26319 0.79363 0 1 2647300 73449 12109 49193 50249 85358 85358 0.007114105254800052 VTVCGLAA 8 Unmodified _VTVCGLAA_ 0 0 0 ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.1989440917969 2 367.199282 732.384011 0.23875 8.7669E-05 -0.088528 -3.2507E-05 0.15022 5.5162E-05 367.19914296010086 48.641 0.29769 48.598 48.455 48.753 -0.04369 38 14 4 0 0 0 0.80624 1 26319 26319 2.8892 0 1 8810800 73450 12109 49193 50249 85359 85359 0.007114105254800052 VTVCGLAA 8 Unmodified _VTVCGLAA_ 0 0 0 ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF ENST00000357156.6_1_20:33128465-33128741:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 367.199282 732.384011 0.3502 0.00012859 -0.42529 -0.00015616 -0.075083 -2.757E-05 367.1990398057322 49.01 0.275 48.638 48.48 48.755 -0.37172 -0.0039759 -0.00019948 NaN 2.8892 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 2647300 73451 12109 49193 50249 0.007114105254800052 VTVDLWSI 8 Unmodified _VTVDLWSI_ 0 0 0 nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE nc|ENSG00000263528|Q14164-2|IKBKE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2768859863281 2 466.758018 931.501483 0.50938 0.00023776 0.010625 4.9592E-06 0.52001 0.00024272 466.7580084408063 77.959 0.24393 77.959 77.833 78.076 0 19 10 2 0 0 0 8.7369 1 43348 43348 26.341 0 1 581860 73452 10855 49194 50250 85360 85360 0.032992666659424685 VTVETVLDL 9 Unmodified _VTVETVLDL_ 0 0 0 ENST00000558703.1_1_14:24708977-24709055:-|nuORF ENST00000558703.1_1_14:24708977-24709055:-|nuORF ENST00000558703.1_1_14:24708977-24709055:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7827453613281 2 494.78169 987.548827 0.50605 0.00025038 0.16158 7.9945E-05 0.66762 0.00033033 494.78171901421075 57.151 0.35436 57.151 56.947 57.301 0 39 15 3 0 0 0 0.06187 1 31740 31740 42.095 6.0504 1 8994600 73453 15285 49195 50251 85361 85361 0.0545550114627531 VTVETVLDL 9 Unmodified _VTVETVLDL_ 0 0 0 ENST00000558703.1_1_14:24708977-24709055:-|nuORF ENST00000558703.1_1_14:24708977-24709055:-|nuORF ENST00000558703.1_1_14:24708977-24709055:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.78173828125 2 494.78169 987.548827 0.2201 0.0001089 0.57719 0.00028558 0.79728 0.00039448 494.78193740380163 65.613 0.4212 59.438 59.207 59.628 -6.1757 43 24 2 0 0 0 0.026094 1 42669 42669 57.471 6.6163 1 37925000 73454 15285 49195 50251 85362 85362 0.0545550114627531 VTVFISYAL 9 Unmodified _VTVFISYAL_ 0 0 0 ENSG00000170953|ENST00000306842|OR8B12 ENSG00000170953|ENST00000306842|OR8B12 ENSG00000170953|ENST00000306842|OR8B12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.7530822753906 2 506.789318 1011.56408 0.18229 9.2382E-05 2.6767 0.0013565 2.859 0.0014489 506.79048775856745 99.015 0.23398 92.84 92.74 92.974 -6.1757 21 14 2 0 0 0 0.19613 1 65893 65893 12.532 0.89125 1 24746000 73455 8050 49196 50252 85363 85363 0.058764127341419226 VTVGFPLYF 9 Unmodified _VTVGFPLYF_ 0 0 0 REV__nc|ENSG00000151577|P35462-3|DRD3 REV__nc|ENSG00000151577|P35462-3|DRD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2852172851562 2 521.784036 1041.55352 0.6351 0.00033139 1.0153 0.00052976 1.6504 0.00086115 521.7838248006218 72.89 0.5914 72.89 72.461 73.052 0 36 27 2 0 0 0 0.48152 1 40434 40434 8.5933 0 1 655780 + 73456 21076 49197 50253 85364 85364 0.03440430079695034 VTVHIDYL 8 Unmodified _VTVHIDYL_ 0 0 0 REV__ENSG00000213965|ENST00000397061|NUDT19 REV__ENSG00000213965|ENST00000397061|NUDT19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 480.2932739257812 2 480.263468 958.512382 1.1406 0.00054777 -0.16688 -8.0146E-05 0.97367 0.00046762 480.26354598824173 37.995 0.35887 33.626 33.456 33.814 -4.3689 37 21 2 0 0 0 8.7369 1 22479 22479 12.532 0 1 18943000 + 73457 24299 49198 50254 85365 85365 0.03146669040211236 VTVIVILIAI 10 Unmodified _VTVIVILIAI_ 0 0 0 ENSG00000184602|ENST00000329565|SNN ENSG00000184602|ENST00000329565|SNN ENSG00000184602|ENST00000329565|SNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1054.732177734375 1 1053.7282 1052.72092 0.44171 0.00046544 -1.5304 -0.0016126 -1.0886 -0.0011471 1054.7308070610604 46.468 0.11747 46.132 46.073 46.19 -0.33664 8 5 2 0 0 0 0.71123 1 24893 24893 1.6526 0 1 7845700 73458 9276 49199 50255 85366 85366 0.19666697624438712 VTVKKKKSLS 10 Unmodified _VTVKKKKSLS_ 0 0 0 ENSG00000169989|ENST00000304337|TIGD4 ENSG00000169989|ENST00000304337|TIGD4 ENSG00000169989|ENST00000304337|TIGD4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3699951171875 2 559.368798 1116.72304 NaN NaN NaN NaN NaN NaN NaN 85.986 1 85.986 85.486 86.486 0 0 0 0 1.0061 1 47638 47638 0 0 1 73459 7935 49200 50256 85367 85367 0.16935126362272968 VTVKTIKKKQK 11 Unmodified _VTVKTIKKKQK_ 0 0 0 ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4;ENST00000528363.5_1_11:2975753-2985939:-|nuORF;ENST00000319092.5_1_1:117075690-117076050:-|nuORF ENSG00000205531|ENST00000380542|NAP1L4 ENSG00000205531|ENST00000380542|NAP1L4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.9368896484375 2 650.937379 1299.86021 NaN NaN NaN NaN NaN NaN NaN 27.66 1 27.688 27.188 28.188 0.028664 0 0 0 0.9435 1 14380 14380 0 0 1 73460 10370 49201 50257 85368 85368 0.22227035241826343 VTVLIEATTD 10 Unmodified _VTVLIEATTD_ 0 0 0 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 REV__nc|ENSG00000162669|A2PYH4-2|HFM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1061.574462890625 1 1061.57248 1060.56521 0.22809 0.00024214 -0.087567 -9.2959E-05 0.14053 0.00014918 1061.57339175774 65.05 0.10437 64.566 64.511 64.616 -0.48428 6 4 2 0 0 0 0.24012 1 35476 35476 0 0 1 681330 + 73461 21676 49202 50258 85369 85369 0.03734582312358725 VTVLLDVITV 10 Unmodified _VTVLLDVITV_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.3385009765625 2 536.336633 1070.65871 1.4854 0.00079666 -0.2776 -0.00014889 1.2078 0.00064778 536.3362598712605 107.51 0.47321 101.34 101.13 101.6 -6.1757 130 77 2 0 0 0 0.72607 2 71852 71852;71955 0 0 1 4264800 + 73462 23079 49203 50259 85370;85371 85370 0.12620926485442396 VTVLQLPIE 9 Unmodified _VTVLQLPIE_ 0 0 0 REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.3078918457031 2 506.307875 1010.6012 0.58215 0.00029475 0.33906 0.00017167 0.92121 0.00046642 506.3082290950258 68.062 0.23318 68.062 67.971 68.204 0 16 11 2 0 0 0 0.51218 1 37985 37985 6.7232 0 1 526670 + 73463 22680 49204 50260 85372 85372 0.09632084279905939 VTVLQLPIE 9 Unmodified _VTVLQLPIE_ 0 0 0 REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.307875 1010.6012 0.58215 0.00029475 0.33906 0.00017167 0.92121 0.00046642 506.3082290950258 68.062 0.23318 68.062 67.971 68.204 0 -0.015043 8.8611E-06 NaN 6.7232 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 526670 + 73464 22680 49204 50260 0.09632084279905939 VTVLQLPIE 9 Unmodified _VTVLQLPIE_ 0 0 0 REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF REV__ENST00000465379.1_1_2:174774671-174778005:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 506.307875 1010.6012 0.015066 7.6281E-06 0.28713 0.00014538 0.3022 0.000153 506.3079681651847 68.573 0.1741 68.092 67.967 68.141 -0.48071 0.015043 -4.3727E-05 NaN 6.7232 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 539460 + 73465 22680 49204 50260 0.09632084279905939 VTVLWTLLV 9 Unmodified _VTVLWTLLV_ 0 0 0 ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB ENSG00000069943|ENST00000164305|PIGB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.3277587890625 2 522.328611 1042.64267 NaN NaN NaN NaN NaN NaN NaN 85.623 1 85.685 85.185 86.185 0.061638 0 0 0 0.10545 1 47398 47398 42.095 10.057 1 73466 1009 49205 50261 85373 85373 0.1230526503920828 VTVPATSQVPE 11 Unmodified _VTVPATSQVPE_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3011474609375 2 564.300778 1126.587 0.11373 6.4179E-05 -0.25209 -0.00014225 -0.13835 -7.8073E-05 564.3004196973121 52.343 0.31355 52.343 52.175 52.489 0 29 13 3 0 0 0 0.28407 1 28935 28935 27.629 0 1 4516000 73467 16152 49206 50262 85374 85374 0.02877387060948422 VTVPIGHP 8 Unmodified _VTVPIGHP_ 0 0 0 REV__nc|ENSG00000170234|Q96N64-3|PWWP2A REV__nc|ENSG00000170234|Q96N64-3|PWWP2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.239990234375 2 410.239796 818.465038 NaN NaN NaN NaN NaN NaN NaN 68.231 1 68.231 67.731 68.731 0 0 0 0 0.97444 1 38039 38039 5.2307 0 1 + 73468 22457 49207 50263 85375 85375 0.04854434559888432 VTVPINGT 8 Unmodified _VTVPINGT_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4519653320312 1 800.451245 799.443968 0.053846 4.3101E-05 0.89469 0.00071616 0.94854 0.00075926 800.4518440092087 52.682 0.37288 52.247 52.082 52.455 -0.43497 44 18 3 0 0 0 0.19688 1 28530 28530 71.134 3.0529 1 20113000 + 73469 23655 49208 50264 85376 85376 0.03622424460365892 VTVPINGT 8 Unmodified _VTVPINGT_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MULTI-MSMS AL20221201_MKP_PDAC_01 4 800.4518432617188 1 800.451245 799.443968 1.2911 0.0010335 -0.40103 -0.00032101 0.89011 0.00071249 800.4508395211047 59.366 0.52443 53.252 52.99 53.515 -6.1147 72 28 3 0 0 0 0.19688 1 38094 38094 71.134 3.0529 1 111280000 + 73470 23655 49208 50264 85377 85377 0.03622424460365892 VTVPINGT 8 Unmodified _VTVPINGT_ 0 0 0 REV__nc|ENSG00000187741|O15360-3|FANCA REV__nc|ENSG00000187741|O15360-3|FANCA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 800.451245 799.443968 -0.27332 -0.00021878 1.8125 0.0014508 1.5392 0.001232 800.4527156743106 52.232 0.36293 52.232 52.039 52.402 0 -0.0075845 0.00034408 NaN 71.134 41 15 3 NaN NaN NaN NaN 0 NaN NaN 0 19361000 + 73471 23655 49208 50264 0.03622424460365892 VTVRLNQQ 8 Unmodified _VTVRLNQQ_ 0 0 0 ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 ENSG00000198917|ENST00000361256|SPOUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2777404785156 2 479.277441 956.540328 0.59788 0.00028655 0.096534 4.6267E-05 0.69441 0.00033282 479.27735427843936 86.479 0.59687 85.976 85.699 86.296 -0.50318 69 24 4 0 0 0 0.80676 1 47207 47207 2.5775 0 1 12016000 73472 10196 49209 50265 85378 85378 0.060319920203255606 VTVSNLVSI 9 Unmodified _VTVSNLVSI_ 0 0 0 REV__nc|ENSG00000071082|P62899-2|RPL31 REV__nc|ENSG00000071082|P62899-2|RPL31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2768859863281 2 466.276575 930.538597 NaN NaN NaN NaN NaN NaN NaN 77.985 1 77.985 77.485 78.485 0 0 0 0 0.33856 1 43348 43348 23.148 0 1 + 73473 29504 49210 50266 85379 85379 0.07054938211717854 VTVTHRLL 8 Unmodified _VTVTHRLL_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7926940917969 2 469.792727 937.5709 -0.039102 -1.837E-05 1.1282 0.00053 1.0891 0.00051163 469.7931009237232 21.999 0.12751 21.999 21.954 22.082 0 17 11 2 0 0 0 0.80383 1 11164 11164 4.3292 0.38484 1 965340 73474 8389 49211 50267 85380 85380 0.09961770405368497 VTVTHRNY 8 Unmodified _VTVTHRNY_ 0 0 0 nc|ENSG00000066294|Q9UIB8-6|CD84;ENST00000368047.3_1_1:160523601-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8-5|CD84;nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;ENSG00000066294|ENST00000368054|CD84;nc|ENSG00000066294|Q9UIB8-2|CD84;nc|ENSG00000066294|Q9UIB8|CD84 nc|ENSG00000066294|Q9UIB8-6|CD84 nc|ENSG00000066294|Q9UIB8-6|CD84 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2587280273438 2 495.261791 988.509028 0.44559 0.00022069 -1.065 -0.00052744 -0.61939 -0.00030676 495.2614001702432 72.966 0.53828 72.966 72.611 73.149 0 65 25 4 0 0 0 0.78849 1 40544 40544 9.3474 0.75416 1 7573600 73475 933 49212 50268 85381 85381 0.014314189862261628 VTVVAPQS 8 Unmodified _VTVVAPQS_ 0 0 0 nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB;nc|ENSG00000133961|P49757-9|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;ENST00000553997.5_1_14:73748216-73753941:-|nuORF;ENST00000557486.1_1_14:73748983-73753845:-|nuORF nc|ENSG00000133961|P49757-4|NUMB nc|ENSG00000133961|P49757-4|NUMB MULTI-MSMS AL20221201_MKP_PDAC_01 4 800.4520263671875 1 800.451245 799.443968 1.2911 0.0010335 -0.40103 -0.00032101 0.89011 0.00071249 800.4508395211047 59.366 0.52443 53.252 52.99 53.515 -6.1147 72 28 3 0 0 0 0.17028 2 38222 37959;38222 81.89 3.7408 1 111280000 73476 4544 49213 50269 85382;85383 85383 0.036224244603772604 VTVVRYIVIGF 11 Unmodified _VTVVRYIVIGF_ 0 0 0 REV__nc|ENSG00000151572|Q32M45-3|ANO4 REV__nc|ENSG00000151572|Q32M45-3|ANO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5921630859375 3 422.592058 1264.75434 0.93265 0.00039413 1.404 0.00059334 2.3367 0.00098747 422.5925752802834 82.082 1.0204 75.906 75.195 76.215 -6.1757 106 56 3 0 0 0 0.72131 1 53434 53434 2.2527 0.66045 1 22005000 + 73477 21074 49214 50270 85384 85384 0.13255699396358978 VTVVTPQG 8 Unmodified _VTVVTPQG_ 0 0 0 ENST00000607049.5_1_21:44438250-44448736:+|nuORF;nc|ENSG00000160199|P55347-2|PKNOX1;ENSG00000160199|ENST00000291547|PKNOX1 ENST00000607049.5_1_21:44438250-44448736:+|nuORF ENST00000607049.5_1_21:44438250-44448736:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4522705078125 1 800.451245 799.443968 0.053846 4.3101E-05 0.89469 0.00071616 0.94854 0.00075926 800.4518440092087 52.682 0.37288 52.247 52.082 52.455 -0.43497 44 18 3 0 0 0 0.21098 1 28425 28425 68.081 0 1 20113000 73478 6695 49215 50271 85385 85385 0.036224244603772604 VTVVWFYL 8 Unmodified _VTVVWFYL_ 0 0 0 ENST00000398117.1_1_18:60794336-60794393:-|nuORF ENST00000398117.1_1_18:60794336-60794393:-|nuORF ENST00000398117.1_1_18:60794336-60794393:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1026.4052734375 1 1026.56588 1025.5586 0.4912 0.00050425 0.53334 0.00054751 1.0245 0.0010518 1027.572346033201 28.946 0.47943 28.884 28.67 29.15 -0.06216 36 20 3 0 0 0 8.7369 1 14876 14876 2.5775 0 1 17307000 73479 12843 49216 50272 85386 85386 0.04684733942326602 VTWFWNLF 8 Unmodified _VTWFWNLF_ 0 0 0 REV__ENST00000554677.1_1_14:64902319-64908231:+|nuORF REV__ENST00000554677.1_1_14:64902319-64908231:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.943603515625 2 556.781828 1111.5491 0.56722 0.00031582 -0.72982 -0.00040635 -0.1626 -9.0535E-05 556.7818391963289 48.519 0.35487 48.476 48.359 48.714 -0.04369 38 17 3 0 0 0 8.7369 1 26287 26287 8.5933 0.68312 1 3349100 + 73480 28756 49217 50273 85387 85387 -0.002210343432125228 VTWQLEYPG 9 Unmodified _VTWQLEYPG_ 0 0 0 nc|ENSG00000006118|Q24JP5-3|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A;nc|ENSG00000006118|Q24JP5-4|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A nc|ENSG00000006118|Q24JP5-3|TMEM132A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.849853515625 3 364.850197 1091.52876 -0.55648 -0.00020303 -0.49574 -0.00018087 -1.0522 -0.0003839 364.8500858369277 17.617 0.44282 17.617 17.297 17.74 0 187 79 3 0 0 0 0.55775 1 8750 8750 2.2828 0 1 1850000 73481 328 49218 50274 85388 85388 -0.013342497936719155 VTYCGLUSYS 10 Unmodified _VTYCGLUSYS_ 0 0 0 ENSG00000186838|ENST00000335426|SELENOV ENSG00000186838|ENST00000335426|SELENOV ENSG00000186838|ENST00000335426|SELENOV MSMS AL20221201_MKP_PDAC_01 4 381.8023071289062 3 381.802516 1142.38572 NaN NaN NaN NaN NaN NaN NaN 99.921 1 93.745 93.245 94.245 -6.1757 0 0 0 0.9997 1 66695 66695 0 0 0 73482 9511 49219 50275 85389 85389 -0.17977868802154262 VTYDWDCQL 9 Unmodified _VTYDWDCQL_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7470703125 2 571.744782 1141.47501 0.36045 0.00020609 -0.64706 -0.00036995 -0.2866 -0.00016386 571.7464386380508 50.358 0.28626 50.358 50.209 50.495 0 27 12 3 0 0 0 0.30562 1 27739 27739 16.942 5.302 1 4012800 73483 16604 49220 50276 85390 85390 -0.090067902877081 VTYGIWICL 9 Unmodified _VTYGIWICL_ 0 0 0 ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1;ENST00000524192.6_1_20:61904210-61909556:+|nuORF;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 ENSG00000101199|ENST00000370283|ARFGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2562255859375 2 534.283346 1066.55214 0.41173 0.00021998 1.8309 0.00097824 2.2427 0.0011982 534.2843630194525 58.268 0.21297 58.268 58.103 58.316 0 9 7 2 0 0 0 0.19298 1 32391 32391 4.756 0 1 407500 73484 1931 49221 50277 85391 85391 0.021524727192854698 VTYHIVNDFA 10 Unmodified _VTYHIVNDFA_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1178.382690429688 1 1178.58405 1177.57677 0.83675 0.00098617 -3.0468 -0.0035909 -2.21 -0.0026047 1178.5811393223746 90.144 0.16603 90.186 90.077 90.243 0.042175 7 5 2 0 0 0 0.23257 1 50115 50115 7.609 0 1 14358000 73485 1378 49222 50278 85392 85392 -0.004911758736170668 VTYHTGTY 8 Unmodified _VTYHTGTY_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2211303710938 2 471.2218 940.429047 0.28201 0.00013289 0.43155 0.00020336 0.71356 0.00033624 471.2216706619471 40.061 0.23895 40.061 39.892 40.131 0 24 11 3 0 0 0 0.72953 1 21496 21496 14.582 0 1 1991400 73486 7243 49223 50279 85393 85393 -0.043550674076186624 VTYHTGTY 8 Unmodified _VTYHTGTY_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 471.2222595214844 2 471.2218 940.429047 1.0784 0.00050818 0.17106 8.0609E-05 1.2495 0.00058879 471.2219834156373 50.189 0.46146 44.65 44.452 44.914 -5.5391 43 29 2 0 0 0 0.46494 2 31549 31398;31549 38.151 7.7987 1 16257000 73487 7243 49223 50279 85394;85395 85395 -0.043550674076186624 VTYHTGTY 8 Unmodified _VTYHTGTY_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 471.2221374511719 2 471.2218 940.429047 NaN NaN NaN NaN NaN NaN NaN 40.485 1 35.955 35.455 36.455 -4.5294 0 0 0 0.88073 1 24183 24183 19.439 1.304 1 73488 7243 49223 50279 85396 85396 -0.043550674076186624 VTYHTGTY 8 Unmodified _VTYHTGTY_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 471.2218 940.429047 0.28201 0.00013289 0.43155 0.00020336 0.71356 0.00033624 471.2216706619471 40.061 0.23895 40.061 39.892 40.131 0 -0.018062 -3.0528E-05 NaN 14.582 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1991400 73489 7243 49223 50279 -0.043550674076186624 VTYHTGTY 8 Unmodified _VTYHTGTY_ 0 0 0 ENST00000519879.1_1_8:118533115-118541135:+|nuORF;nc|ENSG00000164758|Q96HR3-2|MED30;ENSG00000164758|ENST00000297347|MED30 ENST00000519879.1_1_8:118533115-118541135:+|nuORF ENST00000519879.1_1_8:118533115-118541135:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 471.2218 940.429047 0.53461 0.00025192 0.603 0.00028415 1.1376 0.00053606 471.22206396972956 40.394 0.1059 40.097 40.008 40.114 -0.29716 0.018062 0.00013105 NaN 14.582 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 633180 73490 7243 49223 50279 -0.043550674076186624 VTYLGHSPVL 10 Unmodified _VTYLGHSPVL_ 0 0 0 REV__ENST00000369660.8_1_X:153713031-153713436:-|nuORF REV__ENST00000369660.8_1_X:153713031-153713436:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7365112304688 2 543.303124 1084.5917 -0.18806 -0.00010217 -0.80755 -0.00043875 -0.99561 -0.00054092 543.3032845336716 38.115 0.20491 37.844 37.719 37.924 -0.27133 14 9 2 0 0 0 0.22327 1 20058 20058 13.906 0 1 890040 + 73491 26040 49224 50280 85397 85397 0.05278315994382865 VTYLLRGLL 9 Unmodified _VTYLLRGLL_ 0 0 0 nc|ENSG00000145107|Q96DZ7-2|TM4SF19;ENSG00000145107|ENST00000273695|TM4SF19 nc|ENSG00000145107|Q96DZ7-2|TM4SF19 nc|ENSG00000145107|Q96DZ7-2|TM4SF19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.3017578125 2 524.331685 1046.64882 1.5761 0.00082639 -1.0283 -0.00053916 0.54782 0.00028724 524.3317065883582 98.199 0.13414 92.023 91.952 92.087 -6.1757 16 8 2 0 0 0 0.16895 1 65143 65143 18.146 3.3081 1 21881000 73492 5668 49225 50281 85398 85398 0.1273578327075029 VTYLNDAL 8 Unmodified _VTYLNDAL_ 0 0 0 REV__ENSG00000092445|ENST00000263798|TYRO3 REV__ENSG00000092445|ENST00000263798|TYRO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.740478515625 2 454.739825 907.465098 0.58562 0.0002663 0.72012 0.00032747 1.3057 0.00059377 454.7400533280905 61.252 0.48131 61.252 60.929 61.411 0 43 20 3 0 0 0 0.77907 2 34130 34130;34226 10.183 0 1 1540100 + 73493 17912 49226 50282 85399;85400 85399 0.007663897692395949 VTYNHDCF 8 Unmodified _VTYNHDCF_ 0 0 0 REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF REV__ENST00000345117.2_1_8:42693107-42698298:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.70458984375 2 499.70546 997.396366 0.7041 0.00035184 -1.5893 -0.0007942 -0.88524 -0.00044236 499.7051975177403 53.772 0.21456 53.772 53.685 53.899 0 20 9 3 0 0 0 0.80143 1 29829 29829 5.7604 0 1 2131400 + 73494 19818 49227 50283 85401 85401 -0.10243597802127624 VTYNIKFKK 9 Unmodified _VTYNIKFKK_ 0 0 0 REV__nc|ENSG00000122133|P09466-2|PAEP REV__nc|ENSG00000122133|P09466-2|PAEP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8725280761719 3 380.89737 1139.67028 0.36119 0.00013758 -3.5489 -0.0013518 -3.1877 -0.0012142 380.89601538084605 40.747 0.20234 40.745 40.689 40.891 -0.0017929 13 9 2 0 0 0 0.21493 1 21765 21765 4.897 0 1 1462100 + 73495 19330 49228 50284 85402 85402 0.10603168299462595 VTYPTEPF 8 Unmodified _VTYPTEPF_ 0 0 0 REV__ENSG00000105738|ENST00000222345|SIPA1L3 REV__ENSG00000105738|ENST00000222345|SIPA1L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.2352905273438 2 477.234376 952.454199 NaN NaN NaN NaN NaN NaN NaN 59.632 1 59.632 59.132 60.132 0 0 0 0 0.85111 1 33233 33233 20.871 5.103 1 + 73496 18454 49229 50285 85403 85403 -0.023930126050458966 VTYSVSSEDSS 11 Unmodified _VTYSVSSEDSS_ 0 0 0 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 ENSG00000197410|ENST00000357232|DCHS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.7530517578125 2 580.751315 1159.48808 0.32067 0.00018623 0.26989 0.00015674 0.59056 0.00034297 580.7518019847271 47.218 0.27747 47.218 47.062 47.339 0 27 12 3 0 0 0 0.48615 1 25827 25827 17.113 0.1706 1 3873900 73497 9951 49230 50286 85404 85404 -0.08528680694598734 VTYYSCCC 8 Unmodified _VTYYSCCC_ 0 0 0 ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.694580078125 2 471.163724 940.312896 0.29619 0.00013956 1.5302 0.00072098 1.8264 0.00086054 471.1646557927078 37.885 0.26469 37.885 37.743 38.007 0 54 12 7 0 0 0 8.7369 1 20257 20257 2.5775 2.5775 1 10905000 73498 10314 49231 50287 85405 85405 -0.15964793565842683 VVAAGSIW 8 Unmodified _VVAAGSIW_ 0 0 0 REV__ENSG00000196549|ENST00000360490|MME REV__ENSG00000196549|ENST00000360490|MME MULTI-MSMS AL20221201_MKP_PDAC_01 4 802.4444580078125 1 802.445766 801.438489 0.91336 0.00073292 -0.22256 -0.00017859 0.6908 0.00055433 802.4455032410889 67.907 0.4587 61.731 61.499 61.957 -6.1757 41 26 2 0 0 0 0.48233 2 44170 44170;44303 36.466 0 1 25343000 + 73499 23844 49232 50288 85406;85407 85406 0.029827456685552534 VVAEFVPLI 9 Unmodified _VVAEFVPLI_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.8006591796875 2 493.799686 985.584819 1.6857 0.00083239 -0.33152 -0.0001637 1.3542 0.00066869 493.7996872526748 100.84 0.12228 94.661 94.611 94.734 -6.1757 12 7 2 0 0 0 0.03327 1 67562 67562 53.576 6.6547 1 23138000 73500 9805 49233 50289 85408 85408 0.09145003113803796 VVAFCHPL 8 Unmodified _VVAFCHPL_ 0 0 0 REV__ENST00000534719.1_1_11:61732358-61732406:-|nuORF REV__ENST00000534719.1_1_11:61732358-61732406:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.2381896972656 2 443.236199 884.457844 NaN NaN NaN NaN NaN NaN NaN 23.419 1 20.641 20.141 21.141 -2.7784 0 0 0 0.9706 1 12677 12677 6.3541 0 1 + 73501 28506 49234 50290 85409 85409 0.010993786878202627 VVAGNNKRP 9 Unmodified _VVAGNNKRP_ 0 0 0 REV__ENSG00000174482|ENST00000698399|LINGO2 REV__ENSG00000174482|ENST00000698399|LINGO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7777709960938 2 477.777608 953.540663 0.13813 6.5996E-05 -1.6518 -0.00078918 -1.5136 -0.00072319 477.77690864819255 37.95 0.22 37.679 37.562 37.782 -0.27133 14 10 2 0 0 0 0.41742 1 19976 19976 11.64 0.81637 1 2449400 + 73502 22794 49235 50291 85410 85410 0.062034117401822186 VVAGNNKRP 9 Unmodified _VVAGNNKRP_ 0 0 0 REV__ENSG00000174482|ENST00000698399|LINGO2 REV__ENSG00000174482|ENST00000698399|LINGO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 477.777608 953.540663 0.13813 6.5996E-05 -1.6518 -0.00078918 -1.5136 -0.00072319 477.77690864819255 37.95 0.22 37.679 37.562 37.782 -0.27133 0.1969 -3.0026E-05 NaN 11.64 14 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2449400 + 73503 22794 49235 50291 0.062034117401822186 VVAGRRKS 8 Unmodified _VVAGRRKS_ 0 0 0 ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.V216M|1|0.42|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant ENSG00000151952|ENST00000422113|TMEM132D ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.7745361328125 2 436.774868 871.535184 0.22814 9.9645E-05 0.21009 9.1764E-05 0.43823 0.00019141 436.77493570162557 78.997 0.39389 78.997 78.809 79.203 0 34 18 3 0 0 0 0.80763 1 43952 43952 2.0598 0 1 1469000 73504 6158 49236 50292 85411 85411 0.09427732948370249 VVAGRRKS 8 Unmodified _VVAGRRKS_ 0 0 0 ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.V216M|1|0.42|ENSG00000151952|chr12:129700132-129700132|C/T|missense_variant ENSG00000151952|ENST00000422113|TMEM132D ENSG00000151952|ENST00000422113|TMEM132D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 436.774868 871.535184 0.97113 0.00042416 -0.79515 -0.0003473 0.17598 7.6863E-05 436.7744278921096 79.658 0.38643 79.169 78.968 79.354 -0.48932 0.048108 -0.00046556 NaN 2.0598 40 17 3 NaN NaN NaN NaN 0 NaN NaN 0 3610000 73505 6158 49236 50292 0.09427732948370249 VVAKLRLW 8 Unmodified _VVAKLRLW_ 0 0 0 REV__ENST00000552683.5_1_16:707859-713132:+|nuORF REV__ENST00000552683.5_1_16:707859-713132:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2752685546875 2 492.821287 983.628021 0.20982 0.0001034 -1.445 -0.00071215 -1.2352 -0.00060875 492.82048616182306 30.072 0.21208 30.102 29.995 30.207 0.030106 14 8 2 0 0 0 8.7369 1 15731 15731 2.8892 0 1 1630800 + 73506 28660 49237 50293 85412 85412 0.13555237681737253 VVAPITTGY 9 Unmodified _VVAPITTGY_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-2|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 921.51318359375 1 920.50876 919.501483 0.52538 0.00048361 2.2005 0.0020256 2.7259 0.0025092 920.5098820603506 49.456 0.24866 49.456 49.333 49.582 0 27 10 4 0 0 0 0.087258 1 27172 27172 36.044 15.173 1 5835600 73507 3200 49238 50294 85413 85413 0.038512666659471506 VVAPITTGY 9 Unmodified _VVAPITTGY_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-2|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 920.509033203125 1 920.50876 919.501483 0.60182 0.00055398 -0.56028 -0.00051574 0.04154 3.8238E-05 920.5082650403008 49.923 0.29855 49.531 49.374 49.672 -0.3923 33 14 3 0 0 0 0.0081063 2 26824 26824;26929 93.883 49.476 1 9090200 73508 3200 49238 50294 85414;85415 85414 0.038512666659471506 VVAPITTGY 9 Unmodified _VVAPITTGY_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-2|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 920.5089111328125 1 920.50876 919.501483 0.81428 0.00074955 -0.30189 -0.00027789 0.51239 0.00047166 920.5083481215457 57.43 0.44296 51.402 51.149 51.592 -6.0275 48 23 3 0 0 0 1.2707E-06 3 36704 36589;36704;36827 161.89 91.179 1 49267000 73509 3200 49238 50294 85416;85417;85418 85417 0.038512666659471506 VVAPITTGY 9 Unmodified _VVAPITTGY_ 0 0 0 nc|ENSG00000116161|Q9HB71-3|CACYBP;ENSG00000116161|ENST00000367679|CACYBP;ENST00000473925.1_1_1:174969094-174977843:+|nuORF;nc|ENSG00000116161|Q9HB71-2|CACYBP;ENST00000483307.1_1_1:174969088-174974127:+|nuORF nc|ENSG00000116161|Q9HB71-3|CACYBP nc|ENSG00000116161|Q9HB71-3|CACYBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7583618164062 2 460.758018 919.501483 0.99035 0.00045631 -0.2273 -0.00010473 0.76304 0.00035158 460.7579525233378 57.427 0.438 51.4 51.114 51.552 -6.0275 36 23 2 0 0 0 0.0094915 2 36787 36659;36787 81.864 37.457 1 44509000 73510 3200 49238 50294 85419;85420 85420 0.038512666659471506 VVASRQYT 8 Unmodified _VVASRQYT_ 0 0 0 ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1;FNDC1|p.V299A|1|0.22|ENSG00000164694|chr6:159225546-159225546|T/C|missense_variant ENSG00000164694|ENST00000297267|FNDC1 ENSG00000164694|ENST00000297267|FNDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.2518310546875 2 462.250892 922.48723 1.0262 0.00047435 0.38098 0.00017611 1.4071 0.00065046 462.2510784053414 21.857 0.26057 19.122 18.995 19.256 -2.7348 24 14 2 0 0 0 0.76266 1 11742 11742 11.64 0.81637 1 2275000 73511 7230 49239 50295 85421 85421 0.022886142376592034 VVASTFYE 8 Unmodified _VVASTFYE_ 0 0 0 REV__ENSG00000164742|ENST00000297323|ADCY1 REV__ENSG00000164742|ENST00000297323|ADCY1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.2261352539062 2 458.226551 914.438549 NaN NaN NaN NaN NaN NaN NaN 20.821 1 20.85 20.35 21.35 0.028357 0 0 0 0.97444 1 10548 10548 0.69038 0 1 + 73512 21944 49240 50296 85422 85422 -0.02209299122102948 VVATEVGG 8 Unmodified _VVATEVGG_ 0 0 0 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 ENSG00000079112|ENST00000027335|CDH17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.200439453125 2 366.200336 730.386119 NaN NaN NaN NaN NaN NaN NaN 5.4319 1 5.433 4.933 5.933 0.0010915 0 0 0 0.97444 1 2736 2736 0 0 1 73513 1262 49241 50297 85423 85423 0.010141625349660899 VVATSTPPPL 10 Unmodified _VVATSTPPPL_ 0 0 0 nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;RREB1|p.D746Efs*167|1|0.57|ENSG00000124782|chr6:7230337-7230337|C/-|frameshift_variant nc|ENSG00000124782|Q92766-5|RREB1 nc|ENSG00000124782|Q92766-5|RREB1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2636108398438 2 491.2844 980.554247 0.6204 0.00030479 -0.80917 -0.00039753 -0.18877 -9.2741E-05 491.28404900785245 48.172 0.42934 42.938 42.657 43.087 -5.2339 42 25 2 0 0 0 0.22667 1 29830 29830 10.824 0.75 1 12289000 73514 3815 49242 50298 85424 85424 0.06319224728747486 VVAVAGTIIL 10 Unmodified _VVAVAGTIIL_ 0 0 0 nc|ENSG00000135333|Q15375-2|EPHA7;nc|ENSG00000135333|Q15375-4|EPHA7;ENSG00000135333|ENST00000369303|EPHA7 nc|ENSG00000135333|Q15375-2|EPHA7 nc|ENSG00000135333|Q15375-2|EPHA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.3124389648438 2 478.312961 954.611368 -0.58891 -0.00028168 1.5819 0.00075666 0.99302 0.00047497 478.3136084755047 106 0.22269 105.95 105.88 106.1 -0.048103 24 10 3 0 0 0 0.72607 1 58736 58736 0 0 1 12551000 73515 4690 49243 50299 85425 85425 0.13224692005155703 VVAVRVWK 8 Unmodified _VVAVRVWK_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.8060607910156 2 478.805637 955.596721 0.33645 0.00016109 0.17307 8.2867E-05 0.50952 0.00024396 478.80565453321657 60.816 0.29389 60.773 60.633 60.927 -0.04351 37 14 3 0 0 0 0.72953 2 33141 33141;33249 14.582 14.582 1 18115000 + 73516 18723 49244 50300 85426;85427 85426 0.11714664647661266 VVAVRVWK 8 Unmodified _VVAVRVWK_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.8050537109375 2 478.805637 955.596721 1.4512 0.00069485 -1.0556 -0.00050544 0.39558 0.00018941 478.8049839730005 95.642 0.29547 89.466 89.334 89.63 -6.1757 47 18 3 0 0 0 0.57045 1 63441 63441 28.487 3.813 1 62819000 + 73517 18723 49244 50300 85428 85428 0.11714664647661266 VVAWKHYF 8 Unmodified _VVAWKHYF_ 0 0 0 ENSG00000204590|ENST00000376621|GNL1;nc|ENSG00000204590|P36915-2|GNL1 ENSG00000204590|ENST00000376621|GNL1 ENSG00000204590|ENST00000376621|GNL1 MSMS AL20221201_MKP_PDAC_01 4 350.5237731933594 3 350.523755 1048.54944 NaN NaN NaN NaN NaN NaN NaN 21.222 1 18.529 18.029 19.029 -2.693 0 0 0 0.97348 1 11341 11341 3.9444 0 1 73518 10305 49245 50301 85429 85429 0.027103853766448083 VVCMTKRP 8 Unmodified _VVCMTKRP_ 0 0 0 REV__ENST00000342665.4_2_20:306256-306373:+|nuORF REV__ENST00000342665.4_2_20:306256-306373:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.2542419433594 2 467.254065 932.493578 0.88414 0.00041312 0.40178 0.00018773 1.2859 0.00060085 467.2540544756411 102.24 0.17496 96.065 95.939 96.114 -6.1757 18 7 4 0 0 0 0.80975 1 68617 68617 0.79363 0 1 93360000 + 73519 25723 49246 50302 85430 85430 0.024630928731880886 VVCSGVSRYSL 11 Unmodified _VVCSGVSRYSL_ 0 0 0 REV__ENST00000287546.8_1_3:184585837-184586798:+|nuORF REV__ENST00000287546.8_1_3:184585837-184586798:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.8769226074219 3 390.537624 1168.59104 1.6343 0.00063825 3.0506 0.0011914 4.6849 0.0018296 390.536802604672 35.874 0.40538 31.681 31.493 31.899 -4.1928 55 25 3 0 0 0 0.30985 1 20838 20838 16.275 0.53592 1 9581600 + 73520 25226 49247 50303 85431 85431 0.013491532830130382 VVCSSKTQKT 10 Unmodified _VVCSSKTQKT_ 0 0 0 nc|ENSG00000177575|Q86VB7-4|CD163 nc|ENSG00000177575|Q86VB7-4|CD163 nc|ENSG00000177575|Q86VB7-4|CD163 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7896728515625 2 540.789524 1079.56449 NaN NaN NaN NaN NaN NaN NaN 94.475 1 94.054 93.554 94.554 -0.42044 0 0 0 1.0061 1 51615 51615 0 0 1 73521 16406 49248 50304 85432 85432 0.02789464391707952 VVDAIPVFL 9 Unmodified _VVDAIPVFL_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 972.5780029296875 1 972.576445 971.569169 0.24624 0.00023948 3.4673 0.0033722 3.7136 0.0036117 972.5783115493425 99.148 0.13194 98.955 98.868 99 -0.19321 8 4 2 0 0 0 0.052168 1 54135 54135 44.407 19.733 1 2286000 73522 6277 49249 50305 85433 85433 0.08224716596760118 VVDAIPVFL 9 Unmodified _VVDAIPVFL_ 0 0 0 nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;ENST00000479037.5_1_2:230672327-230744801:-|nuORF nc|ENSG00000153827|Q14669-4|TRIP12 nc|ENSG00000153827|Q14669-4|TRIP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 972.5868530273438 1 972.576445 971.569169 1.1635 0.0011316 0.62133 0.00060429 1.7848 0.0017359 972.5769077139278 100.99 0.10492 94.813 94.764 94.869 -6.1757 9 5 2 0 0 0 0.038285 1 67668 67668 50.855 6.448 1 34145000 73523 6277 49249 50305 85434 85434 0.08224716596760118 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2687072753906 2 465.26875 928.522947 0.92561 0.00043066 -0.40601 -0.0001889 0.5196 0.00024175 465.2686350015248 47.898 0.26945 47.898 47.725 47.995 0 26 12 3 0 0 0 0.024882 1 26217 26217 58.679 28.042 1 4238400 73524 7699 49250 50306 85435 85435 0.05582651694658125 VVDAVVTQV 9 Unmodified _VVDAVVTQV_ 0 0 0 ENST00000526368.1_1_11:62530297-62533976:+|nuORF;ENSG00000168002|ENST00000301788|POLR2G;ENST00000527435.5_1_11:62529161-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF ENST00000526368.1_1_11:62530297-62533976:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.5322875976562 1 929.530224 928.522947 0.73927 0.00068717 -0.56879 -0.00052871 0.17048 0.00015846 929.5298482063255 47.914 0.18874 47.914 47.789 47.978 0 13 8 2 0 0 0 0.07916 1 26223 26223 37.974 9.4872 1 1081900 73525 7699 49250 50306 85436 85436 0.05582651694658125 VVDEEVFF 8 Unmodified _VVDEEVFF_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2396545410156 2 492.239658 982.464763 0.54768 0.00026959 1.8817 0.00092622 2.4293 0.0011958 492.2404825274622 73.645 0.37004 73.645 73.485 73.856 0 30 15 3 0 0 0 0.65867 1 40973 40973 20.871 15.111 1 864630 73526 6618 49251 50307 85437 85437 -0.027170299506110496 VVDFLYQYWKL 11 Unmodified _VVDFLYQYWKL_ 0 0 0 ENSG00000077684|ENST00000226319|JADE1;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 ENSG00000077684|ENST00000226319|JADE1 ENSG00000077684|ENST00000226319|JADE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 737.389892578125 2 737.39247 1472.77039 NaN NaN NaN NaN NaN NaN NaN 44.165 1 44.143 43.643 44.643 -0.022064 0 0 0 0.93811 1 23692 23692 3.8763 0.88109 1 73527 1224 49252 50308 85438 85438 0.05291360842602444 VVDKTPLI 8 Unmodified _VVDKTPLI_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2041625976562 2 442.776211 883.537869 0.70455 0.00031196 2.3213 0.0010278 3.0258 0.0013398 442.77721207232156 78.647 0.25616 78.7 78.576 78.832 0.052452 15 9 2 0 0 0 8.7369 1 43453 43453 0.69038 0 1 1237200 + 73528 21279 49253 50309 85439 85439 0.09144143562662066 VVDLNLLTEE 10 Unmodified _VVDLNLLTEE_ 0 0 0 nc|ENSG00000145431|Q9NRA1-4|PDGFC;ENST00000506880.5_3_4:157684244-157699382:-|nuORF;nc|ENSG00000145431|Q9NRA1-2|PDGFC;ENSG00000145431|ENST00000502773|PDGFC nc|ENSG00000145431|Q9NRA1-4|PDGFC nc|ENSG00000145431|Q9NRA1-4|PDGFC MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8095703125 2 572.808436 1143.60232 0.91744 0.00052552 0.72181 0.00041346 1.6393 0.00093898 572.8088322393912 48.719 0.33791 43.323 43.12 43.458 -5.3961 25 19 2 0 0 0 0.48505 1 30341 30341 17.113 0 1 21318000 73529 5698 49254 50310 85440 85440 0.03626253858146811 VVDNQKYSEIC 11 Unmodified _VVDNQKYSEIC_ 0 0 0 REV__nc|ENSG00000113269|Q86XS8-2|RNF130 REV__nc|ENSG00000113269|Q86XS8-2|RNF130 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8821411132812 3 433.207944 1296.602 0.57681 0.00024988 0.80487 0.00034868 1.3817 0.00059856 433.2083247733727 69.387 1.4599 69.418 68.668 70.128 0.030914 220 75 7 0 0 0 0.74157 1 38316 38316 0.094841 0 1 118170000 + 73530 18857 49255 50311 85441 85441 -0.03443489133337607 VVDPNQVNV 9 Unmodified _VVDPNQVNV_ 0 0 0 nc|ENSG00000130589|Q9BYK8|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8-2|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 nc|ENSG00000130589|Q9BYK8|HELZ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.26123046875 2 492.261456 982.50836 0.12324 6.0667E-05 1.4025 0.00069038 1.5257 0.00075105 492.26205059556753 37.559 0.16986 37.559 37.51 37.68 0 14 8 2 0 0 0 0.047196 1 20018 20018 46.021 13.715 1 2474100 73531 16188 49256 50312 85442 85442 0.016405795465288975 VVDQVLLP 8 Unmodified _VVDQVLLP_ 0 0 0 REV__ENSG00000121691|ENST00000241052|CAT REV__ENSG00000121691|ENST00000241052|CAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.77099609375 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 62.882 1 62.882 62.382 63.382 0 0 0 0 0.97444 1 35076 35076 2.8892 0 1 + 73532 19303 49257 50313 85443 85443 0.07671857045625075 VVDQVLLP 8 Unmodified _VVDQVLLP_ 0 0 0 REV__ENSG00000121691|ENST00000241052|CAT REV__ENSG00000121691|ENST00000241052|CAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.7698059082031 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 63.067 1 63.067 62.567 63.567 0 0 0 0 0.97444 1 35181 35181 2.8892 0 1 + 73533 19303 49257 50313 85444 85444 0.07671857045625075 VVDSMEDQYPF 11 Unmodified _VVDSMEDQYPF_ 0 0 0 REV__ENSG00000037042|ENST00000251412|TUBG2 REV__ENSG00000037042|ENST00000251412|TUBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.2860717773438 2 665.287011 1328.55947 -0.02643 -1.7584E-05 0.10338 6.878E-05 0.076953 5.1196E-05 665.2867401521637 77.254 0.33185 77.254 77.068 77.4 0 21 14 2 0 0 0 0.73115 1 42875 42875 1.3295 0 1 786720 + 73534 17171 49258 50314 85445 85445 -0.09166884261594532 VVDSVLDW 8 Unmodified _VVDSVLDW_ 0 0 0 REV__nc|ENSG00000183495|Q96L91-4|EP400 REV__nc|ENSG00000183495|Q96L91-4|EP400 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 932.4747924804688 1 932.472374 931.465098 0.41248 0.00038463 0.84247 0.00078558 1.255 0.0011702 932.4732978460746 78.299 0.15779 78.299 78.222 78.379 0 9 6 2 0 0 0 0.80676 1 43543 43543 2.5775 0 1 276520 + 73535 23352 49259 50315 85446 85446 -0.0033761023075840058 VVDSVVMSGGP 11 Unmodified _VVDSVVMSGGP_ 0 0 0 REV__ENSG00000105289|ENST00000541714|TJP3 REV__ENSG00000105289|ENST00000541714|TJP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.762939453125 2 523.762975 1045.5114 0.23224 0.00012164 0.077216 4.0443E-05 0.30945 0.00016208 523.7631841223915 100.18 0.10632 100.02 99.953 100.06 -0.1575 8 3 3 0 0 0 0.7453 1 54705 54705 0 0 1 784900 + 73536 18414 49260 50316 85447 85447 -0.009539133909584052 VVDSVVMSGGP 11 Unmodified _VVDSVVMSGGP_ 0 0 0 REV__ENSG00000105289|ENST00000541714|TJP3 REV__ENSG00000105289|ENST00000541714|TJP3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.762975 1045.5114 0.23224 0.00012164 0.077216 4.0443E-05 0.30945 0.00016208 523.7631841223915 100.18 0.10632 100.02 99.953 100.06 -0.1575 -0.033635 0.0001574 NaN 0 8 3 3 NaN NaN NaN NaN 0 NaN NaN 0 784900 + 73537 18414 49260 50316 -0.009539133909584052 VVDSVVMSGGP 11 Unmodified _VVDSVVMSGGP_ 0 0 0 REV__ENSG00000105289|ENST00000541714|TJP3 REV__ENSG00000105289|ENST00000541714|TJP3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 523.762975 1045.5114 2.0696 0.001084 -1.4806 -0.0007755 0.58901 0.0003085 523.7611725241393 100.12 0.166 100.09 99.934 100.1 -0.036301 0.033635 -0.0014745 NaN 0 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1412800 + 73538 18414 49260 50316 -0.009539133909584052 VVEEMEIEEE 10 Unmodified _VVEEMEIEEE_ 0 0 0 REV__ENSG00000182674|ENST00000523207|KCNB2 REV__ENSG00000182674|ENST00000523207|KCNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.6572875976562 2 618.271026 1234.5275 NaN NaN NaN NaN NaN NaN NaN 16.354 1 16.359 15.859 16.859 0.0050564 0 0 0 1.0061 1 8197 8197 0 0 1 + 73539 23289 49261 50317 85448 85448 -0.0803829673538985 VVEEVKPL 8 Unmodified _VVEEVKPL_ 0 0 0 REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF REV__ENST00000342222.6_1_8:42151073-42188494:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.774169921875 2 456.773668 911.532783 NaN NaN NaN NaN NaN NaN NaN 81.308 1 81.308 80.808 81.808 0 0 0 0 0.97444 1 45130 45130 2.5775 0 1 + 73540 18354 49262 50318 85449 85449 0.07347839700048553 VVEIYDLY 8 Unmodified _VVEIYDLY_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2625427246094 2 507.263133 1012.51171 NaN NaN NaN NaN NaN NaN NaN 30.472 1 30.392 29.892 30.892 -0.080429 0 0 0 0.97444 1 15815 15815 0.79363 0 1 + 73541 19385 49263 50319 85450 85450 0.005958296005132979 VVEKLLRCL 9 Unmodified _VVEKLLRCL_ 0 0 0 REV__ENST00000557624.1_1_14:24808148-24809140:-|nuORF REV__ENST00000557624.1_1_14:24808148-24809140:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.2051086425781 3 358.223088 1071.64744 NaN NaN NaN NaN NaN NaN NaN 43.388 1 38.623 38.123 39.123 -4.7648 0 0 0 0.82739 1 26351 26351 2.4985 0 1 + 73542 19666 49264 50320 85451 85451 0.11447825910340725 VVELSHTFQY 10 Unmodified _VVELSHTFQY_ 0 0 0 REV__ENST00000311813.9_2_7:30963339-30963621:+|nuORF REV__ENST00000311813.9_2_7:30963339-30963621:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8096923828125 2 611.808771 1221.60299 1.0602 0.00064863 -0.74227 -0.00045413 0.31791 0.0001945 611.8085782758494 50.364 0.34981 44.825 44.607 44.957 -5.5391 35 22 2 0 0 0 0.33553 1 31511 31511 25.399 7.253 1 8416800 + 73543 25428 49265 50321 85452 85452 0.0010509329786145827 VVEMDRRGP 9 Unmodified _VVEMDRRGP_ 0 0 0 REV__ENST00000537766.1_1_11:61520189-61533185:+|nuORF REV__ENST00000537766.1_1_11:61520189-61533185:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.8985290527344 3 353.518564 1057.53386 1.8107 0.0006401 0.84816 0.00029984 2.6588 0.00093994 353.8536659960725 21.724 0.30405 18.989 18.9 19.204 -2.7348 22 16 2 0 0 0 0.21052 1 11644 11644 4.1895 1.1172 1 3092600 + 73544 28550 49266 50322 85453 85453 0.007397307973178613 VVENKEVL 8 Unmodified _VVENKEVL_ 0 0 0 ENSG00000107651|ENST00000369075|SEC23IP;nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP ENSG00000107651|ENST00000369075|SEC23IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2694702148438 2 465.26875 928.522947 NaN NaN NaN NaN NaN NaN NaN 75.556 1 75.556 75.056 76.056 0 0 0 0 0.97444 1 42026 42026 2.8892 0 1 73545 2508 49267 50323 85454 85454 0.05582651694669494 VVENVPIL 8 Unmodified _VVENVPIL_ 0 0 0 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 ENSG00000140943|ENST00000343411|MBTPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.7696838378906 2 441.768386 881.522219 NaN NaN NaN NaN NaN NaN NaN 60.986 1 60.497 59.997 60.997 -0.48932 0 0 0 0.97444 1 33216 33216 0.79363 0 1 73546 5283 49268 50324 85455 85455 0.07671857045625075 VVFAFLGM 8 Unmodified _VVFAFLGM_ 0 0 0 REV__nc|ENSG00000104044|Q04671-3|OCA2 REV__nc|ENSG00000104044|Q04671-3|OCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2419738769531 2 442.24095 882.467346 0.29487 0.0001304 0.43895 0.00019412 0.73382 0.00032452 442.2411587505792 81.212 0.50401 81.212 80.987 81.491 0 50 23 3 0 0 0 0.80975 2 45014 45014;45112 0.79363 0 1 1754700 + 73547 18333 49269 50325 85456;85457 85456 0.02141146973360719 VVFAFLGM 8 Unmodified _VVFAFLGM_ 0 0 0 REV__nc|ENSG00000104044|Q04671-3|OCA2 REV__nc|ENSG00000104044|Q04671-3|OCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2414245605469 2 442.24095 882.467346 0.6469 0.00028609 0.21032 9.3014E-05 0.85723 0.0003791 442.24093644673934 81.917 0.41876 81.422 81.163 81.582 -0.4952 37 15 3 0 0 0 0.81107 1 44887 44887 0 0 1 3282800 + 73548 18333 49269 50325 85458 85458 0.02141146973360719 VVFAFLGM 8 Unmodified _VVFAFLGM_ 0 0 0 REV__nc|ENSG00000104044|Q04671-3|OCA2 REV__nc|ENSG00000104044|Q04671-3|OCA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 442.24095 882.467346 0.29487 0.0001304 0.43895 0.00019412 0.73382 0.00032452 442.2411587505792 81.212 0.50401 81.212 80.987 81.491 0 -0.10464 0.00010216 NaN 0.79363 50 23 3 NaN NaN NaN NaN 0 NaN NaN 0 1754700 + 73549 18333 49269 50325 0.02141146973360719 VVFAPVIC 8 Unmodified _VVFAPVIC_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 847.4736938476562 1 847.474623 846.467346 0.82851 0.00070214 -1.8344 -0.0015546 -1.0058 -0.00085243 847.4726048442345 101.36 0.086937 95.184 95.144 95.231 -6.1757 6 4 2 0 0 0 0.42709 1 68014 68014 41.817 0 1 9751300 73550 7709 49270 50326 85459 85459 0.03797146973352028 VVFEDLNVF 9 Unmodified _VVFEDLNVF_ 0 0 0 nc|ENSG00000010539|P98182-3|ZNF200;nc|ENSG00000010539|P98182-2|ZNF200;ENSG00000010539|ENST00000414144|ZNF200 nc|ENSG00000010539|P98182-3|ZNF200 nc|ENSG00000010539|P98182-3|ZNF200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2822265625 2 541.281857 1080.54916 0.25738 0.00013931 1.233 0.00066739 1.4904 0.0008067 541.2823362936814 91.119 0.28696 90.624 90.493 90.78 -0.49457 21 12 2 0 0 0 0.53557 1 49792 49792 8.5933 3.3626 1 736030 73551 424 49271 50327 85460 85460 0.012109208661286175 VVFHPSQDLVF 11 Unmodified _VVFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.3406982421875 2 644.340238 1286.66592 -0.28939 -0.00018646 1.208 0.00077834 0.91858 0.00059188 644.3408881459803 69.659 0.22536 69.18 69.042 69.267 -0.47903 16 9 2 0 0 0 0.67477 1 38087 38087 8.1555 4.559 1 671210 73552 2703 49272 50328 85461 85461 0.034056590858881464 VVFHPSQDLVF 11 Unmodified _VVFHPSQDLVF_ 0 0 0 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 ENSG00000110107|ENST00000227524|PRPF19 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 644.340238 1286.66592 0.68279 0.00043995 -1.135 -0.00073132 -0.4522 -0.00029137 644.84089327216 69.089 0.15668 69.12 69.03 69.187 0.030914 -0.029972 -0.002223 NaN 8.1555 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1653700 73553 2703 49272 50328 0.034056590858881464 VVFLGPDVF 9 Unmodified _VVFLGPDVF_ 0 0 0 ENST00000482587.5_3_1:179834300-179834414:-|nuORF ENST00000482587.5_3_1:179834300-179834414:-|nuORF ENST00000482587.5_3_1:179834300-179834414:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5453491210938 1 992.545145 991.537869 1.1371 0.0011286 -2.8189 -0.0027979 -1.6819 -0.0016693 992.5448018986702 101.14 0.067116 94.965 94.907 94.974 -6.1757 5 3 2 0 0 0 0.038285 1 67803 67803 50.855 7.887 1 17671000 73554 14105 49273 50329 85462 85462 0.04176143562665402 VVFQQTLL 8 Unmodified _VVFQQTLL_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2807922363281 2 474.28166 946.548768 -0.65763 -0.0003119 0.93173 0.0004419 0.27409 0.00013 474.2819126017956 104.51 0.035667 104.46 104.44 104.47 -0.048737 7 3 3 0 0 0 0.80992 1 58033 58033 0.69038 0 1 9856700 73555 9210 49274 50330 85463 85463 0.07335545936962262 VVFRDPYRF 9 Unmodified _VVFRDPYRF_ 0 0 0 ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF ENSG00000161016|ENST00000528957|RPL8 ENSG00000161016|ENST00000528957|RPL8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.2329406738281 3 400.217102 1197.62948 0.81227 0.00032509 0.33147 0.00013266 1.1437 0.00045775 400.2171682321901 49.734 0.23717 49.685 49.568 49.805 -0.048824 27 11 3 0 0 0 0.19111 1 26858 26858 11.518 6.1152 1 3224500 73556 6779 49275 50331 85464 85464 0.03856826979836114 VVFRQEIL 8 Unmodified _VVFRQEIL_ 0 0 0 nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL nc|ENSG00000005844|P20701-3|ITGAL nc|ENSG00000005844|P20701-3|ITGAL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.3016052246094 2 502.300384 1002.58622 NaN NaN NaN NaN NaN NaN NaN 86.83 1 86.327 85.827 86.827 -0.50318 0 0 0 0.97444 1 47505 47505 2.5775 0 1 73557 317 49276 50332 85465 85465 0.08502637202559526 VVFSTISL 8 Unmodified _VVFSTISL_ 0 0 0 nc|ENSG00000274391|P56180-4|TPTE;nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE nc|ENSG00000274391|P56180-4|TPTE nc|ENSG00000274391|P56180-4|TPTE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.2564086914062 2 433.255111 864.49567 1.1455 0.00049631 1.6348 0.00070828 2.7803 0.0012046 433.25586718015677 63.945 0.42717 63.934 63.649 64.077 -0.010532 30 20 2 0 0 0 0.80676 1 35008 35008 2.5775 0 1 3490000 73558 10900 49277 50333 85466 85466 0.05800168154291896 VVFTMAYIM 9 Unmodified _VVFTMAYIM_ 0 0 0 nc|ENSG00000155659|Q9Y279-3|VSIG4;nc|ENSG00000155659|Q9Y279-2|VSIG4;ENSG00000155659|ENST00000374737|VSIG4 nc|ENSG00000155659|Q9Y279-3|VSIG4 nc|ENSG00000155659|Q9Y279-3|VSIG4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.8499755859375 3 358.850263 1073.52896 NaN NaN NaN NaN NaN NaN NaN 14.852 1 14.852 14.352 15.352 0 0 0 0 0.84021 1 7099 7099 2.7352 0.23671 1 73559 6401 49278 50334 85467 85467 -0.004862893896870446 VVFTMFVIC 9 Unmodified _VVFTMFVIC_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5187377929688 3 353.518625 1057.53405 -0.47302 -0.00016722 0.86719 0.00030657 0.39417 0.00013935 353.5189054185564 36.533 0.36251 36.283 36.109 36.471 -0.2497 51 16 5 0 0 0 0.30562 1 19130 19130 11.495 2.7493 1 68480000 + 73560 29763 49279 50335 85468 85468 0.007580144729445237 VVFTMFVIC 9 Unmodified _VVFTMFVIC_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 353.518625 1057.53405 0.40147 0.00014193 0.33191 0.00011734 0.73338 0.00025926 353.5186778808248 36.259 0.20202 36.259 36.167 36.369 0 0.004915 -0.00053471 NaN 11.495 25 9 3 NaN NaN NaN NaN 0 NaN NaN 0 12206000 + 73561 29763 49279 50335 0.007580144729445237 VVFTMFVIC 9 Unmodified _VVFTMFVIC_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 353.518625 1057.53405 -0.47302 -0.00016722 0.86719 0.00030657 0.39417 0.00013935 353.5189054185564 36.533 0.36251 36.283 36.109 36.471 -0.2497 0.029574 3.2989E-05 NaN 11.495 51 16 5 NaN NaN NaN NaN 0 NaN NaN 0 68480000 + 73562 29763 49279 50335 0.007580144729445237 VVFTMFVIC 9 Unmodified _VVFTMFVIC_ 0 0 0 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 REV__nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 353.518625 1057.53405 -0.29326 -0.00010367 1.2179 0.00043056 0.92466 0.00032688 353.5190634593195 36.194 0.25146 36.219 36.075 36.326 0.024967 -0.034489 0.00040495 NaN 11.495 20 10 2 NaN NaN NaN NaN 0 NaN NaN 0 10832000 + 73563 29763 49279 50335 0.007580144729445237 VVGALILR 8 Unmodified _VVGALILR_ 0 0 0 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 ENSG00000247315|ENST00000500893|ZCCHC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.7874450683594 2 420.786913 839.559273 1.8803 0.0007912 0.15861 6.6742E-05 2.0389 0.00085794 420.7868289776005 105.31 0.18467 99.131 99.044 99.229 -6.1757 119 48 3 0 0 0 0.80975 1 70535 70535 0.79363 0 1 470790000 73564 10737 49280 50336 85469 85469 0.13307573382041937 VVGAVLAE 8 Unmodified _VVGAVLAE_ 0 0 0 REV__ENST00000332439.4_1_17:7762018-7762066:+|nuORF REV__ENST00000332439.4_1_17:7762018-7762066:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7359313964844 2 379.226354 756.438155 -0.047837 -1.8141E-05 0.79929 0.00030311 0.75145 0.00028497 379.2265197848571 55.441 0.15696 55.373 55.278 55.435 -0.068741 14 7 2 0 0 0 8.7369 1 30132 30132 0.79363 0 1 2769000 + 73565 25611 49281 50337 85470 85470 0.050193259487173236 VVGEATFIA 9 Unmodified _VVGEATFIA_ 0 0 0 HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant;nc|ENSG00000008869|Q9P2D3-3|HEATR5B;ENSG00000008869|ENST00000233099|HEATR5B;ENST00000467978.1_1_2:37268272-37283611:-|nuORF HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant HEATR5B|p.N1111Kfs*9|1|0.11|ENSG00000008869|chr2:37032657-37032658|-/T|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 906.4934692382812 1 906.49311 905.485833 0.055155 4.9998E-05 1.0912 0.00098915 1.1463 0.0010391 906.494027624713 78.683 0.27857 78.683 78.53 78.809 0 19 12 2 0 0 0 0.12841 1 43692 43692 30.225 1.738 1 505360 73566 398 49282 50338 85471 85471 0.02930980148892104 VVGEPGPK 8 Unmodified _VVGEPGPK_ 0 0 0 ENSG00000112280|ENST00000357250|COL9A1;ENST00000486080.5_1_6:70926602-70955360:-|nuORF;ENST00000489611.5_1_6:70926602-70990065:-|nuORF;nc|ENSG00000112280|P20849-2|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 ENSG00000112280|ENST00000357250|COL9A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.7239074707031 2 391.723978 781.433404 -0.2259 -8.8489E-05 0.77174 0.00030231 0.54584 0.00021382 391.72421700181155 52.228 0.3159 52.228 52.06 52.376 0 24 13 2 0 0 0 0.57045 1 28893 28893 28.487 1.6032 1 3476100 73567 2876 49283 50339 85472 85472 0.033944418059491 VVGGSPVT 8 Unmodified _VVGGSPVT_ 0 0 0 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 REV__nc|ENSG00000105792|A5D8W1-2|CFAP69 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.1859741210938 2 358.202879 714.391205 -0.31364 -0.00011235 2.6336 0.00094336 2.32 0.00083102 358.20354588998003 31.52 0.17004 31.55 31.478 31.648 0.030104 9 7 2 0 0 0 8.7369 1 16504 16504 0.79363 0 1 1823600 + 73568 18458 49284 50340 85473 85473 0.022584663975862895 VVGGVVLIG 9 Unmodified _VVGGVVLIG_ 0 0 0 REV__ENSG00000116688|ENST00000235329|MFN2 REV__ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.5249633789062 1 812.524016 811.516739 -0.22521 -0.00018299 0.81265 0.0006603 0.58744 0.00047731 812.524539771495 69.014 0.61235 68.533 68.286 68.899 -0.48071 65 26 4 0 0 0 0.1492 1 37847 37847 28.173 0 1 20381000 + 73569 19057 49285 50341 85474 85474 0.10344178253819791 VVGGVVLIG 9 Unmodified _VVGGVVLIG_ 0 0 0 REV__ENSG00000116688|ENST00000235329|MFN2 REV__ENSG00000116688|ENST00000235329|MFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.5242919921875 1 812.524016 811.516739 0.76029 0.00061775 0.31791 0.00025831 1.0782 0.00087607 812.524179628107 68.484 0.32365 68.509 68.378 68.701 0.025146 30 15 3 0 0 0 0.1492 1 37692 37692 28.173 0 1 3291000 + 73570 19057 49285 50341 85475 85475 0.10344178253819791 VVGGVVLIG 9 Unmodified _VVGGVVLIG_ 0 0 0 REV__ENSG00000116688|ENST00000235329|MFN2 REV__ENSG00000116688|ENST00000235329|MFN2 MSMS AL20221201_MKP_PDAC_01 4 406.7662048339844 2 406.765646 811.516739 NaN NaN NaN NaN NaN NaN NaN 75.872 1 69.696 69.196 70.196 -6.1757 0 0 0 0.24185 1 49626 49626 28.173 0 1 + 73571 19057 49285 50341 85476 85476 0.10344178253819791 VVGIHCLL 8 Unmodified _VVGIHCLL_ 0 0 0 REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF REV__ENST00000533415.5_1_17:45198303-45266605:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9121704101562 2 427.251849 852.489145 0.021719 9.2797E-06 4.3501 0.0018586 4.3718 0.0018679 427.2537399562821 30.002 0.16979 30.032 29.921 30.091 0.030106 13 6 3 0 0 0 8.7369 1 15665 15665 17.087 5.9721 1 1705900 + 73572 16957 49286 50342 85477 85477 0.05699951721931029 VVGLVGGIV 9 Unmodified _VVGLVGGIV_ 0 0 0 REV__ENSG00000158887|ENST00000533357|MPZ REV__ENSG00000158887|ENST00000533357|MPZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.524658203125 1 812.524016 811.516739 0.1213 9.8559E-05 1.0249 0.00083273 1.1462 0.00093129 812.5246164673162 68.531 0.32891 68.531 68.35 68.679 0 27 14 2 0 0 0 0.22317 1 38249 38249 20.871 0 1 1269900 + 73573 21450 49287 50343 85478 85478 0.10344178253819791 VVGSGPSL 8 Unmodified _VVGSGPSL_ 0 0 0 REV__ENSG00000122729|ENST00000309951|ACO1 REV__ENSG00000122729|ENST00000309951|ACO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.7300720214844 2 358.202879 714.391205 -0.28705 -0.00010282 3.8346 0.0013736 3.5476 0.0012708 358.20415590264474 36.331 0.20921 36.356 36.187 36.396 0.024967 14 8 2 0 0 0 8.7369 1 19229 19229 0 0 1 1203900 + 73574 19356 49288 50344 85479 85479 0.022584663975862895 VVGTPLLG 8 Unmodified _VVGTPLLG_ 0 0 0 REV__ENST00000370859.7_1_1:75766344-75862270:-|nuORF REV__ENST00000370859.7_1_1:75766344-75862270:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.2360229492188 2 378.236722 754.45889 0.056028 2.1192E-05 2.2411 0.00084765 2.2971 0.00086884 378.2370934672544 80.27 0.65493 80.27 79.775 80.43 0 47 34 2 0 0 0 0.81107 1 44544 44544 0 0 1 1038700 + 73575 26068 49289 50345 85480 85480 0.0718391632839257 VVGTPLLG 8 Unmodified _VVGTPLLG_ 0 0 0 REV__ENST00000370859.7_1_1:75766344-75862270:-|nuORF REV__ENST00000370859.7_1_1:75766344-75862270:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 378.236722 754.45889 0.056028 2.1192E-05 2.2411 0.00084765 2.2971 0.00086884 378.2370934672544 80.27 0.65493 80.27 79.775 80.43 0 0 0 NaN 0 47 34 2 NaN NaN NaN NaN 0 NaN NaN 0 1038700 + 73576 26068 49289 50345 0.0718391632839257 VVHCPSHI 8 Unmodified _VVHCPSHI_ 0 0 0 ENSG00000023330|ENST00000484952|ALAS1 ENSG00000023330|ENST00000484952|ALAS1 ENSG00000023330|ENST00000484952|ALAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.2294616699219 2 446.228905 890.443257 0.38402 0.00017136 0.33121 0.0001478 0.71523 0.00031916 446.2287584097632 41.417 0.46498 36.809 36.612 37.077 -4.6079 56 30 2 0 0 0 0.67481 2 24815 24815;24953 19.439 0 1 53766000 73577 541 49290 50346 85481;85482 85481 -0.006346934603129739 VVHDAFARAPA 11 Unmodified _VVHDAFARAPA_ 0 0 0 REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4 REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4 MSMS AL20221201_MKP_PDAC_01 4 385.2101745605469 3 385.208607 1152.60399 NaN NaN NaN NaN NaN NaN NaN 42.452 1 37.768 37.268 38.268 -4.6846 0 0 0 0.91348 1 25651 25651 3.3557 1.103 1 + 73578 23653 49291 50347 85483 85483 0.03379352457409368 VVHRLLSI 8 Unmodified _VVHRLLSI_ 0 0 0 nc|ENSG00000100395|Q969R5-2|L3MBTL2;nc|ENSG00000100395|Q969R5-3|L3MBTL2;ENST00000466589.5_1_22:41601366-41623356:+|nuORF;ENSG00000100395|ENST00000216237|L3MBTL2;ENST00000479978.5_1_22:41615341-41623356:+|nuORF nc|ENSG00000100395|Q969R5-2|L3MBTL2 nc|ENSG00000100395|Q969R5-2|L3MBTL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.8032836914062 2 468.803094 935.591636 NaN NaN NaN NaN NaN NaN NaN 2.287 1 2.27 1.77 2.77 -0.017019 0 0 0 0.97444 1 1168 1168 0 0 1 73579 1814 49292 50348 85484 85484 0.12126360785055113 VVHVWPYIL 9 Unmodified _VVHVWPYIL_ 0 0 0 REV__ENSG00000163755|ENST00000296051|HPS3 REV__ENSG00000163755|ENST00000296051|HPS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3240356445312 2 563.326402 1124.63825 1.6588 0.00093443 -0.21032 -0.00011848 1.4485 0.00081595 563.326166277568 98.178 0.22569 92.003 91.908 92.134 -6.1757 46 14 4 0 0 0 0.085487 1 65052 65052 36.466 0 1 815230000 + 73580 21812 49293 50349 85485 85485 0.0809180061630741 VVIGGVVAV 9 Unmodified _VVIGGVVAV_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.5245971679688 1 812.524016 811.516739 -0.22521 -0.00018299 0.81265 0.0006603 0.58744 0.00047731 812.524539771495 69.014 0.61235 68.533 68.286 68.899 -0.48071 65 26 4 0 0 0 0.016115 2 37746 37645;37746 67.413 0 1 20381000 73581 16353 49294 50350 85486;85487 85487 0.10344178253797054 VVIGGVVAV 9 Unmodified _VVIGGVVAV_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.525634765625 1 812.524016 811.516739 0.76029 0.00061775 0.31791 0.00025831 1.0782 0.00087607 812.524179628107 68.484 0.32365 68.509 68.378 68.701 0.025146 30 15 3 0 0 0 0.085487 1 37590 37590 36.466 0 1 3291000 73582 16353 49294 50350 85488 85488 0.10344178253797054 VVIGGVVAV 9 Unmodified _VVIGGVVAV_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 812.5236206054688 1 812.524016 811.516739 1.0742 0.0008728 -0.1574 -0.00012789 0.91678 0.00074491 812.5237701358486 75.817 0.70382 69.642 69.3 70.004 -6.1757 91 37 3 0 0 0 0.016115 4 49420 49420;49543;49659;49780 67.413 0 1 119540000 73583 16353 49294 50350 85489;85490;85491;85492 85489 0.10344178253797054 VVIGGVVAV 9 Unmodified _VVIGGVVAV_ 0 0 0 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 nc|ENSG00000165949|P40305-1|IFI27 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 812.524016 811.516739 0.1213 9.8559E-05 1.0249 0.00083273 1.1462 0.00093129 812.5246164673162 68.531 0.32891 68.531 68.35 68.679 0 0.0065033 0.00027832 NaN 67.413 27 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1269900 73584 16353 49294 50350 0.10344178253797054 VVIIIAAQ 8 Unmodified _VVIIIAAQ_ 0 0 0 nc|ENSG00000204314|Q99946-2|PRRT1;ENSG00000204314|ENST00000211413|PRRT1 nc|ENSG00000204314|Q99946-2|PRRT1 nc|ENSG00000204314|Q99946-2|PRRT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.7723388671875 2 413.773471 825.53239 NaN NaN NaN NaN NaN NaN NaN 96.649 1 96.344 95.844 96.844 -0.30472 0 0 0 0.97444 1 52780 52780 0.79363 0 1 73585 10267 49295 50351 85493 85493 0.11264464770840732 VVILLNGLVT 10 Unmodified _VVILLNGLVT_ 0 0 0 REV__nc|ENSG00000176290|Q96R72|OR4K3 REV__nc|ENSG00000176290|Q96R72|OR4K3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.0894165039062 2 520.839342 1039.66413 NaN NaN NaN NaN NaN NaN NaN 104.3 1 104.25 103.75 104.75 -0.048737 0 0 0 1.0029 1 57906 57906 0.35063 0 1 + 73586 29801 49296 50352 85494 85494 0.14588650067935305 VVKAAQKRRKE 11 Unmodified _VVKAAQKRRKE_ 0 0 0 ENSG00000005100|ENST00000225296|DHX33;nc|ENSG00000005100|Q9H6R0-2|DHX33 ENSG00000005100|ENST00000225296|DHX33 ENSG00000005100|ENST00000225296|DHX33 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.9116821289062 2 656.912227 1311.8099 NaN NaN NaN NaN NaN NaN NaN 15.379 1 15.385 14.885 15.885 0.0057774 0 0 0 0.9435 1 7662 7662 0 0 1 73587 297 49297 50353 85495 85495 0.16646925636655396 VVKEKIKRK 9 Unmodified _VVKEKIKRK_ 0 0 0 REV__ENSG00000155850|ENST00000286298|SLC26A2 REV__ENSG00000155850|ENST00000286298|SLC26A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3843994140625 2 564.384783 1126.75501 NaN NaN NaN NaN NaN NaN NaN 19.34 1 19.348 18.848 19.848 0.0078487 0 0 0 0.8622 1 9835 9835 0 0 1 + 73588 21294 49298 50354 85496 85496 0.19670538836066953 VVKEPEPEII 10 Unmodified _VVKEPEPEII_ 0 0 0 ENSG00000148677|ENST00000371697|ANKRD1 ENSG00000148677|ENST00000371697|ANKRD1 ENSG00000148677|ENST00000371697|ANKRD1 MSMS AL20221201_MKP_PDAC_01 4 384.8893127441406 3 384.88854 1151.64379 NaN NaN NaN NaN NaN NaN NaN 79.985 1 73.809 73.309 74.309 -6.1757 0 0 0 0.67239 1 52458 52458 17.863 8.8869 1 73589 5953 49299 50355 85497 85497 0.07403434617481253 VVKHNMLL 8 Unmodified _VVKHNMLL_ 0 0 0 REV__ENST00000603821.1_1_4:153247094-153249553:-|nuORF REV__ENST00000603821.1_1_4:153247094-153249553:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.9736938476562 2 477.28368 952.552807 NaN NaN NaN NaN NaN NaN NaN 104.62 1 98.446 97.946 98.946 -6.1757 0 0 0 0.97444 1 70051 70051 0.79363 0 1 + 73590 29278 49300 50356 85498 85498 0.07463312159029556 VVKIIRRT 8 Unmodified _VVKIIRRT_ 0 0 0 ENSG00000203805|ENST00000398250|PLPP4;nc|ENSG00000203805|Q5VZY2-2|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 ENSG00000203805|ENST00000398250|PLPP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.8374328613281 2 492.837468 983.660384 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.79 103.29 104.29 -0.048737 0 0 0 0.97444 1 57659 57659 0 0 1 73591 10226 49301 50357 85499 85499 0.16790025084731042 VVKKASTA 8 Unmodified _VVKKASTA_ 0 0 0 REV__ENST00000461347.5_1_2:232323706-232327997:-|nuORF REV__ENST00000461347.5_1_2:232323706-232327997:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.2545776367188 2 402.252903 802.491253 NaN NaN NaN NaN NaN NaN NaN 105.38 1 99.208 98.708 99.708 -6.1757 0 0 0 0.97444 1 70616 70616 2.0598 1.2661 1 + 73592 18949 49302 50358 85500 85500 0.0821070373136763 VVKKKKGIGE 10 Unmodified _VVKKKKGIGE_ 0 0 0 REV__ENSG00000126705|ENST00000673934|AHDC1 REV__ENSG00000126705|ENST00000673934|AHDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.306396484375 2 543.355691 1084.69683 -0.59993 -0.00032598 0.56103 0.00030484 -0.038904 -2.1139E-05 543.3561163558204 103.6 0.16937 103.55 103.45 103.62 -0.047928 13 6 3 0 0 0 0.72247 1 57503 57503 0.40072 0 1 3444000 + 73593 19555 49303 50359 85501 85501 0.1578685719080113 VVKLGKRIP 9 Unmodified _VVKLGKRIP_ 0 0 0 ENST00000534336.1_1_11:65268061-65268235:+|nuORF ENST00000534336.1_1_11:65268061-65268235:+|nuORF ENST00000534336.1_1_11:65268061-65268235:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.3517150878906 2 505.347669 1008.68079 1.5512 0.0007839 1.6849 0.00085148 3.2361 0.0016354 505.3492988935602 104.63 0.2211 98.458 98.327 98.549 -6.1757 22 13 2 0 0 0 0.61256 1 70038 70038 0.6015 0 1 6967600 73594 14951 49304 50360 85502 85502 0.17679195744563003 VVKMFYSF 8 Unmodified _VVKMFYSF_ 0 0 0 ENSG00000112079|ENST00000229812|STK38;nc|ENSG00000211455|Q9Y2H1-2|STK38L;ENSG00000211455|ENST00000389032|STK38L ENSG00000112079|ENST00000229812|STK38;nc|ENSG00000211455|Q9Y2H1-2|STK38L ENSG00000112079|ENST00000229812|STK38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7646179199219 2 510.764789 1019.51502 -0.31189 -0.0001593 0.16843 8.6027E-05 -0.14346 -7.3276E-05 510.76485071421035 17.865 0.22315 17.865 17.73 17.953 0 92 39 3 0 0 0 0.78849 1 8866 8866 9.3474 9.3474 1 2107900 73595 2857;10408 49305 50361 85503 85503 0.006048011735401815 VVKNTERGV 9 Unmodified _VVKNTERGV_ 0 0 0 ENSG00000154262|ENST00000284425|ABCA6 ENSG00000154262|ENST00000284425|ABCA6 ENSG00000154262|ENST00000284425|ABCA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.292236328125 2 501.290548 1000.56654 0.26379 0.00013224 0.61963 0.00031061 0.88342 0.00044285 501.2911674712998 74.338 0.92743 74.382 74.096 75.023 0.043983 67 41 2 0 0 0 0.55144 1 41051 41051 4.3292 0 1 1997700 73596 6313 49306 50362 85504 85504 0.06628261191804086 VVKNYIQR 8 Unmodified _VVKNYIQR_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2714233398438 2 510.303458 1018.59236 -0.3333 -0.00017008 0.50431 0.00025735 0.17101 8.7266E-05 510.30370120242884 103.48 0.13609 103.44 103.38 103.52 -0.04792 15 5 5 0 0 0 0.80992 1 57466 57466 0.69038 0 1 14437000 73597 10553 49307 50363 85505 85505 0.08381155434096854 VVKNYIQR 8 Unmodified _VVKNYIQR_ 0 0 0 ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1 ENSG00000221843|ENST00000447166|C2orf16 ENSG00000221843|ENST00000447166|C2orf16 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 510.303458 1018.59236 0.32789 0.00016733 -0.54132 -0.00027624 -0.21343 -0.00010891 510.30303817783306 103.45 0.019333 103.45 103.44 103.46 0 0.0068536 -0.00083839 NaN 0.69038 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 231760 73598 10553 49307 50363 0.08381155434096854 VVKPPGSSL 9 Unmodified _VVKPPGSSL_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2655639648438 2 442.26601 882.517468 -0.53347 -0.00023593 0.30647 0.00013554 -0.22699 -0.00010039 442.26616559523444 30.234 0.42891 30.234 29.974 30.402 0 41 20 3 0 0 0 0.031062 2 15657 15657;15772 54.774 22.468 1 2290500 73599 7096 49308 50364 85506;85507 85506 0.07150972902854846 VVKPPGSSL 9 Unmodified _VVKPPGSSL_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.2661743164062 2 442.26601 882.517468 0.60238 0.00026641 0.65183 0.00028828 1.2542 0.00055469 442.26620981164155 30.221 0.72335 30.14 29.746 30.47 -0.080429 59 27 3 0 0 0 0.010611 3 15657 15557;15657;15768 78.728 17.371 1 10205000 73600 7096 49308 50364 85508;85509;85510 85509 0.07150972902854846 VVKPPGSSL 9 Unmodified _VVKPPGSSL_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.2664184570312 2 442.26601 882.517468 0.26168 0.00011573 -0.18078 -7.9952E-05 0.080901 3.578E-05 442.266157941828 29.981 0.37852 30.011 29.759 30.137 0.030104 19 14 2 0 0 0 0.07916 1 15700 15700 37.974 11.09 1 1012200 73601 7096 49308 50364 85511 85511 0.07150972902854846 VVKPPGSSL 9 Unmodified _VVKPPGSSL_ 0 0 0 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 ENSG00000163930|ENST00000460680|BAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.2666015625 2 442.26601 882.517468 1.0889 0.00048157 -0.1083 -4.7899E-05 0.98056 0.00043367 442.26580607690886 34.321 0.7858 30.31 29.816 30.602 -4.0112 119 44 4 0 0 0 0.020973 3 19718 19590;19718;19850 62.573 22.615 1 89039000 73602 7096 49308 50364 85512;85513;85514 85513 0.07150972902854846 VVKRRVTL 8 Unmodified _VVKRRVTL_ 0 0 0 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 REV__nc|ENSG00000151276|Q96QZ7-4|MAGI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 970.6512451171875 1 970.65201 969.644734 -0.29209 -0.00028352 -0.11026 -0.00010702 -0.40235 -0.00039054 970.6514408788127 103.55 0.097931 103.5 103.45 103.55 -0.047928 5 3 2 0 0 0 0.80992 1 57515 57515 0.69038 0 1 608150 + 73603 21060 49309 50365 85515 85515 0.15869738567698732 VVKRTHKTL 9 Unmodified _VVKRTHKTL_ 0 0 0 REV__ENSG00000153406|ENST00000283429|NMRAL1 REV__ENSG00000153406|ENST00000283429|NMRAL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.5615234375 3 361.232864 1080.67676 NaN NaN NaN NaN NaN NaN NaN 19.799 1 19.807 19.307 20.307 0.0078487 0 0 0 0.86004 1 10081 10081 0.26902 0 1 + 73604 21172 49310 50366 85516 85516 0.139651062508392 VVKSPPVLSVS 11 Unmodified _VVKSPPVLSVS_ 0 0 0 REV__ENSG00000144227|ENST00000272641|NXPH2 REV__ENSG00000144227|ENST00000272641|NXPH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2278137207031 3 371.228897 1110.66486 NaN NaN NaN NaN NaN NaN NaN 34.813 1 34.841 34.341 35.341 0.027401 0 0 0 0.91362 1 18374 18374 6.6235 1.2207 1 + 73605 20694 49311 50367 85517 85517 0.11395444716981729 VVKSPPVLSVS 11 Unmodified _VVKSPPVLSVS_ 0 0 0 REV__ENSG00000144227|ENST00000272641|NXPH2 REV__ENSG00000144227|ENST00000272641|NXPH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2274780273438 3 371.228897 1110.66486 NaN NaN NaN NaN NaN NaN NaN 35.239 1 35.266 34.766 35.766 0.027401 0 0 0 0.93694 1 18616 18616 4.7159 1.6437 1 + 73606 20694 49311 50367 85518 85518 0.11395444716981729 VVLCLTHR 8 Unmodified _VVLCLTHR_ 0 0 0 REV__ENST00000397420.7_1_11:838256-838586:+|nuORF REV__ENST00000397420.7_1_11:838256-838586:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 470.7724609375 2 470.77348 939.532406 -0.21644 -0.0001019 -0.57086 -0.00026874 -0.7873 -0.00037064 470.7729135235097 33.061 0.14915 32.902 32.787 32.936 -0.15918 8 5 2 0 0 0 0.80975 1 17231 17231 0.79363 0 1 1051100 + 73607 26535 49312 50368 85519 85519 0.060221414991815436 VVLDDKDYFLF 11 Unmodified _VVLDDKDYFLF_ 0 0 0 ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1 ENST00000550617.1_1_12:102267096-102267252:-|nuORF ENST00000550617.1_1_12:102267096-102267252:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.856201171875 2 687.353011 1372.69147 0.43588 0.0002996 0.054021 3.7131E-05 0.4899 0.00033673 687.3528060557478 86.284 0.38455 85.781 85.57 85.955 -0.50318 35 15 3 0 0 0 0.58219 2 47159 47159;47266 12.241 5.5175 1 1576900 73608 3135 49313 50369 85520;85521 85520 0.020030888176279404 VVLDDKDYFLF 11 Unmodified _VVLDDKDYFLF_ 0 0 0 ENST00000550617.1_1_12:102267096-102267252:-|nuORF;ENST00000465573.1_1_2:198365552-198367980:+|nuORF;ENSG00000115541|ENST00000233893|HSPE1 ENST00000550617.1_1_12:102267096-102267252:-|nuORF ENST00000550617.1_1_12:102267096-102267252:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.3541259765625 2 687.353011 1372.69147 0.89661 0.00061629 -0.70773 -0.00048646 0.18888 0.00012983 687.3527539636596 98.54 0.10643 92.364 92.308 92.414 -6.1757 14 7 2 0 0 0 0.018218 1 65360 65360 59.052 36.316 1 31887000 73609 3135 49313 50369 85522 85522 0.020030888176279404 VVLENELMY 9 Unmodified _VVLENELMY_ 0 0 0 ENST00000479945.1_1_3:58415822-58416717:-|nuORF;nc|ENSG00000168291|P11177-3|PDHB;nc|ENSG00000168291|P11177-2|PDHB;ENSG00000168291|ENST00000302746|PDHB ENST00000479945.1_1_3:58415822-58416717:-|nuORF ENST00000479945.1_1_3:58415822-58416717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2799072265625 2 555.281 1108.54745 0.47388 0.00026314 -4.0549 -0.0022516 -3.5811 -0.0019885 555.2801113276854 84.654 0.27577 84.654 84.488 84.764 0 20 12 2 0 0 0 0.59218 1 46902 46902 1.8442 0.36234 1 374750 73610 7743 49314 50370 85523 85523 -0.0024845621412623586 VVLHHPPV 8 Unmodified _VVLHHPPV_ 0 0 0 REV__ENST00000441964.1_1_3:43120892-43121165:-|nuORF REV__ENST00000441964.1_1_3:43120892-43121165:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2675170898438 2 449.268887 896.523222 0.75168 0.00033771 -2.0583 -0.00092474 -1.3066 -0.00058703 449.2673470400986 78.51 0.37482 78.562 78.226 78.601 0.052452 25 15 2 0 0 0 0.80975 1 43305 43305 0.79363 0.10326 1 2754500 + 73611 27094 49315 50371 85524 85524 0.07082116205174316 VVLHKLDN 8 Unmodified _VVLHKLDN_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.7629699707031 2 469.276909 936.539266 NaN NaN NaN NaN NaN NaN NaN 75.576 1 75.576 75.076 76.076 0 0 0 0 0.97444 1 42037 42037 0.79363 0 1 + 73612 22551 49316 50372 85525 85525 0.0684577765140375 VVLINGLLG 9 Unmodified _VVLINGLLG_ 0 0 0 REV__ENSG00000112486|ENST00000341935|CCR6 REV__ENSG00000112486|ENST00000341935|CCR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2919311523438 2 449.292028 896.569503 1.7163 0.00077111 0.48516 0.00021798 2.2014 0.00098909 449.29214885028 107.39 2.7617 101.21 100.04 102.8 -6.1757 778 495 2 0 0 0 0.62242 8 71163 71163;71278;71390;71603;71917;72026;72131;72237 0 0 1 16154000 + 73613 18821 49317 50373 85526;85527;85528;85529;85530;85531;85532;85533 85526 0.117081363166335 VVLINGLLG 9 Unmodified _VVLINGLLG_ 0 0 0 REV__ENSG00000112486|ENST00000341935|CCR6 REV__ENSG00000112486|ENST00000341935|CCR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 897.5772705078125 1 897.57678 896.569503 1.2676 0.0011378 0.57816 0.00051894 1.8458 0.0016567 897.5772563470799 107.28 0.42713 101.11 100.84 101.27 -6.1757 116 79 2 0 0 0 0.62242 2 71694 71694;71798 0 0 1 2075000 + 73614 18821 49317 50373 85534;85535 85534 0.117081363166335 VVLIQGAI 8 Unmodified _VVLIQGAI_ 0 0 0 nc|ENSG00000213676|Q99941-2|ATF6B;ENSG00000213676|ENST00000375203|ATF6B;ENST00000475705.1_1_6:32086681-32087735:-|nuORF nc|ENSG00000213676|Q99941-2|ATF6B nc|ENSG00000213676|Q99941-2|ATF6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.7652282714844 2 406.765646 811.516739 NaN NaN NaN NaN NaN NaN NaN 89.235 1 88.731 88.231 89.231 -0.50423 0 0 0 0.97444 1 48792 48792 0.79363 0 1 73615 10452 49318 50374 85536 85536 0.10344178253785685 VVLKAAPI 8 Unmodified _VVLKAAPI_ 0 0 0 REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF REV__ENST00000539757.1_1_12:9440801-9462940:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.2776794433594 2 405.776014 809.537475 1.4208 0.00057654 -1.7457 -0.00070837 -0.32489 -0.00013183 405.7745921561009 102.75 0.18223 96.575 96.459 96.641 -6.1757 78 48 2 0 0 0 0.80975 1 68950 68950 0.79363 0 1 5800700 + 73616 28570 49319 50375 85537 85537 0.12508768633449563 VVLKGKNLIPA 11 Unmodified _VVLKGKNLIPA_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MSMS AL20221201_MKP_PDAC_01 4 576.3804931640625 2 576.379166 1150.74378 NaN NaN NaN NaN NaN NaN NaN 106.91 1 100.73 100.23 101.23 -6.1757 0 0 0 0.9435 1 71538 71538 0 0 1 73617 4271 49320 50376 85538 85538 0.17443716741945536 VVLLLLLRH 9 Unmodified _VVLLLLLRH_ 0 0 0 ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT ENSG00000093010|ENST00000361682|COMT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3682250976562 2 538.371144 1074.72774 -0.59861 -0.00032227 -2.6982 -0.0014526 -3.2968 -0.0017749 538.3697097451014 103.59 0.23631 103.54 103.38 103.62 -0.04792 12 9 2 0 0 0 0.62242 1 57535 57535 0 0 1 1959500 73618 1629 49321 50377 85539 85539 0.19336055295684673 VVLLSPLP 8 Unmodified _VVLLSPLP_ 0 0 0 REV__ENSG00000101558|ENST00000400000|VAPA REV__ENSG00000101558|ENST00000400000|VAPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2746276855469 2 419.275847 836.537141 -0.67249 -0.00028196 -1.5531 -0.00065116 -2.2256 -0.00093312 419.27518253405486 102.3 0.55596 102.25 101.85 102.4 -0.045853 31 18 2 0 0 0 0.81107 1 56765 56765 0 0 1 3459200 + 73619 18184 49322 50378 85540 85540 0.1123334891359491 VVLLTLKKL 9 Unmodified _VVLLTLKKL_ 0 0 0 REV__ENSG00000163827|ENST00000395905|LRRC2 REV__ENSG00000163827|ENST00000395905|LRRC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1026.722412109375 1 1026.72853 1025.72125 0.08283 8.5044E-05 0.82019 0.00084211 0.90302 0.00092715 1027.7325866956396 43.304 0.075771 42.993 42.949 43.025 -0.31039 5 3 2 0 0 0 0.62242 1 23011 23011 0 0 1 3298300 + 73620 21823 49323 50379 85541 85541 0.20942117344316102 VVLLTLKKL 9 Unmodified _VVLLTLKKL_ 0 0 0 REV__ENSG00000163827|ENST00000395905|LRRC2 REV__ENSG00000163827|ENST00000395905|LRRC2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1026.72853 1025.72125 0.08283 8.5044E-05 0.82019 0.00084211 0.90302 0.00092715 1027.7325866956396 43.304 0.075771 42.993 42.949 43.025 -0.31039 0.13927 0.00027244 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 3298300 + 73621 21823 49323 50379 0.20942117344316102 VVLLTLKKL 9 Unmodified _VVLLTLKKL_ 0 0 0 REV__ENSG00000163827|ENST00000395905|LRRC2 REV__ENSG00000163827|ENST00000395905|LRRC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1026.72853 1025.72125 0.91481 0.00093926 0.12478 0.00012811 1.0396 0.0010674 1027.7292676214197 42.724 0.10063 42.715 42.686 42.786 -0.0088196 -0.13927 -0.00044156 NaN 0 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2552600 + 73622 21823 49323 50379 0.20942117344316102 VVLLVLTKL 9 Unmodified _VVLLVLTKL_ 0 0 0 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 ENSG00000153292|ENST00000371253|ADGRF1 MSMS AL20221201_MKP_PDAC_01 4 499.3543090820312 2 499.354628 996.694704 NaN NaN NaN NaN NaN NaN NaN 106.06 1 99.881 99.381 100.38 -6.1757 0 0 0 0.8622 1 71015 71015 0 0 1 73623 6255 49324 50380 85542 85542 0.19622428452976237 VVLNCAQK 8 Unmodified _VVLNCAQK_ 0 0 0 REV__ENSG00000268089|ENST00000598523|GABRQ REV__ENSG00000268089|ENST00000598523|GABRQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.48486328125 1 874.481499 873.474223 -0.35753 -0.00031266 2.4589 0.0021502 2.1013 0.0018376 874.4846986102341 101.25 0.1107 101.21 101.16 101.27 -0.04216 5 3 2 0 0 0 0.61462 1 56263 56263 24.674 0.46393 1 1558900 + 73624 24616 49325 50381 85543 85543 0.03242459853913715 VVLPALLE 8 Unmodified _VVLPALLE_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.2727661132812 2 427.273304 852.532055 NaN NaN NaN NaN NaN NaN NaN 99.14 1 99.14 98.64 99.64 0 0 0 0 0.97444 1 54740 54740 0.69038 0 1 73625 5701 49326 50382 85544 85544 0.09989045050986078 VVLPKPIAT 9 Unmodified _VVLPKPIAT_ 0 0 0 ENSG00000152465|ENST00000378165|NMT2 ENSG00000152465|ENST00000378165|NMT2 ENSG00000152465|ENST00000378165|NMT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 937.6092529296875 1 937.60808 936.600803 1.4015 0.0013141 -1.1473 -0.0010757 0.25425 0.00023839 937.6065599634996 105.07 0.19815 98.89 98.773 98.971 -6.1757 39 24 2 0 0 0 0.61381 1 70326 70326 0.52476 0.52476 1 39129000 73626 6189 49327 50383 85545 85545 0.12996709350693436 VVLRKTRKK 9 Unmodified _VVLRKTRKK_ 0 0 0 REV__ENST00000519765.1_1_8:101164023-101165541:+|nuORF REV__ENST00000519765.1_1_8:101164023-101165541:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3894653320312 2 564.3904 1126.76625 NaN NaN NaN NaN NaN NaN NaN 4.9203 1 4.9214 4.4214 5.4214 0.0010915 0 0 0 0.8622 1 2481 2481 0 0 1 + 73627 20906 49328 50384 85546 85546 0.20793360930201743 VVLRLRPRV 9 Unmodified _VVLRLRPRV_ 0 0 0 ENSG00000225556|ENST00000694868|C2CD4D ENSG00000225556|ENST00000694868|C2CD4D ENSG00000225556|ENST00000694868|C2CD4D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.375732421875 2 554.377292 1106.74003 NaN NaN NaN NaN NaN NaN NaN 15.477 1 15.482 14.982 15.982 0.0057774 0 0 0 0.8622 1 7714 7714 0 0 1 73628 10583 49329 50385 85547 85547 0.19093091758713854 VVLRPLQL 8 Unmodified _VVLRPLQL_ 0 0 0 ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;nc|ENSG00000186815|Q9ULQ1-2|TPCN1;ENST00000428632.7_1_12:113682520-113726187:+|nuORF;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000550543.1_1_12:113722432-113724900:+|nuORF ENSG00000186815|ENST00000335509|TPCN1 ENSG00000186815|ENST00000335509|TPCN1 MSMS AL20221201_MKP_PDAC_01 4 468.8270263671875 2 469.313295 936.612037 NaN NaN NaN NaN NaN NaN NaN 106.27 1 100.09 99.59 100.59 -6.1757 0 0 0 0.97444 1 71139 71139 0.69038 0 1 73629 9509 49330 50386 85548 85548 0.14119531444839595 VVLRRMHLLLI 11 Unmodified _VVLRRMHLLLI_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|203|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|203|2|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|203|2|anti-sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.9427490234375 2 681.941942 1361.86933 NaN NaN NaN NaN NaN NaN NaN 94.787 1 94.801 94.301 95.301 0.014244 0 0 0 0.9435 1 52670 52670 0 0 1 73630 15972 49331 50387 85549 85549 0.2028710532651985 VVLRRRRRRRR 11 Unmodified _VVLRRRRRRRR_ 0 0 0 ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 790.0248413085938 2 790.027449 1578.04034 NaN NaN NaN NaN NaN NaN NaN 88.066 1 88.119 87.619 88.619 0.053352 0 0 0 0.9435 1 48988 48988 0 0 1 73631 12429 49332 50388 85550 85550 0.27444616532693544 VVLRRRRRRRR 11 Unmodified _VVLRRRRRRRR_ 0 0 0 ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF ENST00000373930.3_1_9:123476433-123476640:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 790.026123046875 2 790.027449 1578.04034 NaN NaN NaN NaN NaN NaN NaN 107.68 1 107.63 107.13 108.13 -0.047607 0 0 0 0.9435 1 59651 59651 0 0 1 73632 12429 49332 50388 85551 85551 0.27444616532693544 VVLRSKGGLL 10 Unmodified _VVLRSKGGLL_ 0 0 0 REV__ENST00000566584.5_2_16:57207702-57208599:-|nuORF REV__ENST00000566584.5_2_16:57207702-57208599:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2933349609375 2 521.342584 1040.67061 -0.67287 -0.0003508 0.14148 7.3762E-05 -0.53139 -0.00027704 521.3428085790698 103.58 0.16937 103.53 103.45 103.62 -0.04792 13 6 3 0 0 0 0.72607 1 57491 57491 0 0 1 3488100 + 73633 28921 49333 50389 85552 85552 0.1519058801934534 VVLSASATF 9 Unmodified _VVLSASATF_ 0 0 0 ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENST00000597088.1_1_19:47214155-47217219:-|nuORF;PRKD1|p.I816Sfs*7|1|0.21|ENSG00000184304|chr14:29578353-29578353|A/-|frameshift_variant;ENSG00000184304|ENST00000331968|PRKD1 ENSG00000105287|ENST00000291281|PRKD2;PRKD1|p.I816Sfs*7|1|0.21|ENSG00000184304|chr14:29578353-29578353|A/-|frameshift_variant ENSG00000105287|ENST00000291281|PRKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4927368164062 1 894.49311 893.485833 -0.010174 -9.1005E-06 -0.19267 -0.00017235 -0.20285 -0.00018145 894.4931565156002 64.733 0.19924 64.733 64.587 64.786 0 12 9 2 0 0 0 0.55775 1 36040 36040 3.9444 0 1 510490 73634 2299;9242 49334 50390 85553 85553 0.03482980148896786 VVLSLLLDRAP 11 Unmodified _VVLSLLLDRAP_ 0 0 0 REV__ENSG00000159708|ENST00000329956|LRRC36 REV__ENSG00000159708|ENST00000329956|LRRC36 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.9013366699219 3 399.251813 1194.73361 NaN NaN NaN NaN NaN NaN NaN 43.315 1 43.3 42.8 43.8 -0.015667 0 0 0 0.94181 1 23213 23213 1.2148 0.021489 1 + 73635 21495 49335 50391 85554 85554 0.14403109016711824 VVLVTILLVK 10 Unmodified _VVLVTILLVK_ 0 0 0 REV__nc|ENSG00000171208|Q8NC67-3|NETO2 REV__nc|ENSG00000171208|Q8NC67-3|NETO2 MSMS AL20221201_MKP_PDAC_01 4 366.2618103027344 3 366.261649 1095.76312 NaN NaN NaN NaN NaN NaN NaN 107.5 1 101.32 100.82 101.82 -6.1757 0 0 0 1.0061 1 71894 71894 0 0 1 + 73636 22541 49336 50392 85555 85555 0.2190667303286773 VVMFKKLL 8 Unmodified _VVMFKKLL_ 0 0 0 REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5 REV__nc|ENSG00000266094|Q8WWW0-2|RASSF5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.3142395019531 2 489.314449 976.614345 1.1972 0.0005858 0.011255 5.5073E-06 1.2084 0.00059131 489.3142848268245 95.379 0.57225 89.203 88.891 89.463 -6.1757 81 32 3 0 0 0 0.80624 2 63294 63164;63294 2.8892 0 1 64226000 + 73637 24606 49337 50393 85556;85557 85557 0.1251024385829851 VVMHFFLY 8 Unmodified _VVMHFFLY_ 0 0 0 nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P nc|ENSG00000164616|Q9UKT6|FBXL21P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2742309570312 2 528.272781 1054.53101 0.40482 0.00021385 -0.58892 -0.00031111 -0.1841 -9.7255E-05 528.272178813133 76.99 0.55704 76.99 76.708 77.265 0 99 33 4 0 0 0 0.76859 1 42680 42680 11.114 0 1 66573000 73638 16346 49338 50394 85558 85558 0.005925074104425221 VVMMVMLTI 9 Unmodified _VVMMVMLTI_ 0 0 0 REV__ENSG00000139874|ENST00000267377|SSTR1 REV__ENSG00000139874|ENST00000267377|SSTR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2606811523438 2 518.78381 1035.55307 -0.18768 -9.7365E-05 -0.98046 -0.00050864 -1.1681 -0.00060601 518.7836317207951 25.416 0.181 25.416 25.326 25.507 0 13 8 2 0 0 0 0.20528 1 12989 12989 8.5933 0 1 1182100 + 73639 20435 49339 50395 85559 85559 0.0367122777233817 VVMNGKRP 8 Unmodified _VVMNGKRP_ 0 0 0 REV__ENSG00000088876|ENST00000278772|ZNF343 REV__ENSG00000088876|ENST00000278772|ZNF343 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.7586059570312 2 450.75783 899.501106 1.5357 0.00069222 -0.42178 -0.00019012 1.1139 0.0005021 450.7576701647838 71.171 0.34064 71.21 71.024 71.365 0.039032 31 14 3 0 0 0 0.80975 1 39197 39197 0.79363 0 1 1383900 + 73640 17815 49340 50396 85560 85560 0.04733568465110238 VVMNVVHQL 9 Oxidation (M) _VVM(Oxidation (M))NVVHQL_ VVM(1)NVVHQL VVM(110)NVVHQL 0 0 1 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7886962890625 2 527.789327 1053.5641 -0.38275 -0.00020201 0.76906 0.0004059 0.38631 0.00020389 527.7898498188947 36.956 0.26357 36.707 36.604 36.867 -0.2497 27 11 3 0 0 0 0.0067112 1 19390 19390 112.59 81.957 1 4917200 73641 4782 49341 50397 85561 85561 869 0.03946089462488089 VVMNVVHQL 9 Oxidation (M) _VVM(Oxidation (M))NVVHQL_ VVM(1)NVVHQL VVM(82)NVVHQL 0 0 1 ENSG00000136051|ENST00000332180|WASHC4;nc|ENSG00000136051|Q2M389-2|WASHC4;ENST00000311317.8_1_12:105501518-105541426:+|nuORF ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7911376953125 2 527.789327 1053.5641 1.7131 0.00090413 -0.013011 -6.8672E-06 1.7 0.00089727 527.7894312370584 41.778 0.32961 37.17 36.999 37.329 -4.6079 40 20 3 0 0 0 0.0095811 1 25164 25164 81.613 50.977 1 8650000 73642 4782 49341 50397 85562 85562 869 0.03946089462488089 VVNDIGVK 8 Unmodified _VVNDIGVK_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2513122558594 2 422.25036 842.486168 1.8506 0.00078142 0.81295 0.00034327 2.6636 0.0011247 422.2506125196077 106.86 0.81985 100.69 100.04 100.86 -6.1757 235 146 2 0 0 0 0.80992 1 71574 71574 0.69038 0 1 5193300 + 73643 21279 49342 50398 85563 85563 0.05862399868772172 VVNDIGVK 8 Unmodified _VVNDIGVK_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-SECPEP AL20221201_MKP_PDAC_01 4 422.2513122558594 2 422.25036 842.486168 1.8501 0.00078121 1.0249 0.00043275 2.875 0.001214 422.25071976228384 107.05 0.22397 100.87 100.73 100.95 -6.1757 56 40 2 0 0 0 8.7369 1 71574 71574 0.69038 0 1 3477000 + 73644 21279 49342 50398 85564 85564 0.05862399868772172 VVNFGIGVV 9 Unmodified _VVNFGIGVV_ 0 0 0 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|337|3|anti-sense;chr2:113477199-113482177|50|11.1|0.21|5.7|+|2|TE_info:L1PA3,L1PA3_dup1127,L1,LINE,donor,-,113471482,113477199|None,ZNG1B|48;chr15:53523322-53540662|43|17.86|0.17|6.73|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|37 L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|337|3|anti-sense L1PA3_dup1321|chr2:173527290-173533317:-|1.4799953411304552|0.2637255971055219|2.49|164.0|337|3|anti-sense MULTI-MSMS AL20221201_MKP_PDAC_01 4 903.5321044921875 1 903.52983 902.522553 1.5009 0.0013561 0.27387 0.00024745 1.7747 0.0016035 903.5296578243737 104.62 0.098709 98.449 98.398 98.497 -6.1757 6 4 2 0 0 0 0.62242 1 70064 70064 0 0 1 5846300 73645 87 49343 50399 85565 85565 0.06739276765495106 VVNIITPSH 9 Unmodified _VVNIITPSH_ 0 0 0 ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU ENSG00000115919|ENST00000264170|KYNU MULTI-MSMS AL20221201_MKP_PDAC_01 4 979.555419921875 1 979.557107 978.549831 0.74651 0.00073125 -1.4818 -0.0014516 -0.73534 -0.00072031 979.5553580315419 70.235 0.51649 64.06 63.78 64.296 -6.1757 68 29 3 0 0 0 0.095405 1 45974 45974 34.102 1.797 1 101230000 73646 3174 49344 50400 85566 85566 0.05969760305856653 VVNKNGRL 8 Unmodified _VVNKNGRL_ 0 0 0 REV__CON__Q28085 REV__CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2748718261719 2 450.274701 898.534849 0.41122 0.00018516 1.0319 0.00046464 1.4431 0.0006498 450.2748832723471 85.803 0.4287 85.301 85.143 85.572 -0.5015 31 17 2 0 0 0 0.80975 1 46956 46956 0.79363 0 1 577490 + + 73647 16863 49345 50401 85567 85567 0.08152313228526964 VVNQREDSMD 10 Unmodified _VVNQREDSMD_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7667236328125 2 596.766777 1191.519 -0.40201 -0.00023991 1.473 0.00087907 1.071 0.00063916 596.7680997936736 36.808 0.24279 36.829 36.661 36.904 0.021545 17 10 2 0 0 0 0.48505 1 19500 19500 17.113 0 1 1341800 73648 10743 49346 50402 85568 85568 -0.06909805861369023 VVNQREDSMD 10 Unmodified _VVNQREDSMD_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7680053710938 2 596.766777 1191.519 0.48514 0.00028951 0.14146 8.4417E-05 0.62659 0.00037393 596.767189901106 42.832 0.21378 42.823 42.705 42.919 -0.0088196 15 9 2 0 0 0 0.57893 1 22956 22956 12.241 0 1 4256100 73649 10743 49346 50402 85569 85569 -0.06909805861369023 VVNQREDSMD 10 Unmodified _VVNQREDSMD_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7672119140625 2 596.766777 1191.519 0.19347 0.00011546 0.97054 0.00057919 1.164 0.00069464 596.7668266574966 45.91 0.19291 45.882 45.804 45.997 -0.028015 14 8 2 0 0 0 0.57893 1 24701 24701 12.241 0 1 2064300 73650 10743 49346 50402 85570 85570 -0.06909805861369023 VVNQREDSMD 10 Unmodified _VVNQREDSMD_ 0 0 0 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 ENSG00000248713|ENST00000511828|C4orf54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.7672729492188 2 596.766777 1191.519 0.82179 0.00049042 1.1927 0.00071177 2.0145 0.0012022 596.7666091157566 49.644 0.67468 49.596 49.412 50.087 -0.048824 75 33 3 0 0 0 0.18021 2 26881 26881;26988 36.127 3.9084 1 4127000 73651 10743 49346 50402 85571;85572 85571 -0.06909805861369023 VVNSHQVVRRI 11 Unmodified _VVNSHQVVRRI_ 0 0 0 REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF REV__ENST00000396655.6_1_12:4758292-4777674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 654.3897705078125 2 653.888752 1305.76295 0.19108 0.00012495 -0.2716 -0.0001776 -0.080519 -5.2651E-05 654.3899479560472 31.018 0.22642 31.048 30.904 31.131 0.030106 14 9 2 0 0 0 0.66428 1 16222 16222 7.609 0 1 1076500 + 73652 26513 49347 50403 85573 85573 0.12230066085544422 VVNSSFSELF 10 Unmodified _VVNSSFSELF_ 0 0 0 ENSG00000100815|ENST00000267622|TRIP11;nc|ENSG00000100815|Q15643-2|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 ENSG00000100815|ENST00000267622|TRIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7828979492188 2 564.782222 1127.54989 0.50497 0.0002852 0.58143 0.00032838 1.0864 0.00061358 565.2841016981611 51.569 0.27751 51.569 51.412 51.689 0 31 12 3 0 0 0 0.28721 1 28491 28491 39.95 0 1 7449300 73653 1879 49348 50404 85574 85574 -0.008782844847928573 VVPAMCPLLL 10 Unmodified _VVPAMCPLLL_ 0 0 0 ENST00000436612.5_1_17:38990763-38990934:+|nuORF ENST00000436612.5_1_17:38990763-38990934:+|nuORF ENST00000436612.5_1_17:38990763-38990934:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5379333496094 3 352.537908 1054.5919 NaN NaN NaN NaN NaN NaN NaN 17.044 1 17.049 16.549 17.549 0.0050564 0 0 0 1.0061 1 8578 8578 0 0 1 73654 13335 49349 50405 85575 85575 0.06678276398383787 VVPDKGTK 8 Unmodified _VVPDKGTK_ 0 0 0 REV__nc|ENSG00000162367|P17542-3|TAL1 REV__nc|ENSG00000162367|P17542-3|TAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2508850097656 2 422.25036 842.486168 1.8503 0.0007813 0.62846 0.00026537 2.4788 0.0010467 422.25053447101857 107.18 0.13522 101.01 100.95 101.08 -6.1757 39 23 2 0 0 0 0.80722 1 71718 71718 2.3027 0 1 3095500 + 73655 21634 49350 50406 85576 85576 0.05862399868772172 VVPGSLWP 8 Unmodified _VVPGSLWP_ 0 0 0 ENSG00000179271|ENST00000316939|GADD45GIP1 ENSG00000179271|ENST00000316939|GADD45GIP1 ENSG00000179271|ENST00000316939|GADD45GIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.7422790527344 2 427.742171 853.469789 0.65215 0.00027895 1.3041 0.00055784 1.9563 0.00083679 427.7425473774065 99.625 0.20806 93.449 93.365 93.574 -6.1757 15 12 2 0 0 0 0.67481 1 66432 66432 19.439 0 1 12002000 73656 8823 49351 50407 85577 85577 0.03719318702644614 VVPHLALP 8 Unmodified _VVPHLALP_ 0 0 0 REV__ENSG00000167258|ENST00000447079|CDK12 REV__ENSG00000167258|ENST00000447079|CDK12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.6878662109375 1 845.52435 844.517074 -0.37724 -0.00031897 -0.44013 -0.00037214 -0.81737 -0.00069111 845.5236132860649 106.13 0.24529 106.09 105.96 106.21 -0.048103 16 8 2 0 0 0 0.81107 1 58788 58788 0 0 1 3063700 + 73657 22197 49352 50408 85578 85578 0.08859597973639666 VVPHLALP 8 Unmodified _VVPHLALP_ 0 0 0 REV__ENSG00000167258|ENST00000447079|CDK12 REV__ENSG00000167258|ENST00000447079|CDK12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.6878662109375 1 845.52435 844.517074 -0.37724 -0.00031897 -0.44013 -0.00037214 -0.81737 -0.00069111 845.5236132860649 106.13 0.24529 106.09 105.96 106.21 -0.048103 16 8 2 0 0 0 8.7369 1 58788 58788 0 0 1 3063700 + 73658 22197 49352 50408 85579 85579 0.08859597973639666 VVPKTPQLY 9 Unmodified _VVPKTPQLY_ 0 0 0 REV__ENST00000494171.5_1_2:202212946-202216133:-|nuORF REV__ENST00000494171.5_1_2:202212946-202216133:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.310791015625 2 522.808042 1043.60153 0.40633 0.00021244 0.32187 0.00016828 0.72821 0.00038071 522.8078129612081 47.865 0.26517 47.827 47.68 47.946 -0.038647 20 12 2 0 0 0 0.43463 1 25820 25820 10.824 1.4408 1 2046200 + 73659 21284 49353 50409 85580 85580 0.08147503999771288 VVPLLIILTL 10 Unmodified _VVPLLIILTL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1514892578125 3 365.258016 1092.75222 NaN NaN NaN NaN NaN NaN NaN 18.284 1 18.284 17.784 18.784 0 0 0 0 1.0061 1 9076 9076 0 0 1 + 73660 20370 49354 50410 85581 85581 0.2095527065857823 VVPLLIILTL 10 Unmodified _VVPLLIILTL_ 0 0 0 REV__nc|ENSG00000138798|P01133-2|EGF REV__nc|ENSG00000138798|P01133-2|EGF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2086181640625 3 365.258016 1092.75222 NaN NaN NaN NaN NaN NaN NaN 19.564 1 19.592 19.092 20.092 0.028357 0 0 0 1.0061 1 9872 9872 0 0 1 + 73661 20370 49354 50410 85582 85582 0.2095527065857823 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.7987976074219 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 1.2904 1 1.2904 0.79044 1.7904 0 0 0 0 0.8622 1 628 628 0 0 1 73662 4423 49355 50411 85583 85583 0.1347332432201256 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.79931640625 2 440.796946 879.57934 -0.59194 -0.00026092 2.207 0.00097285 1.6151 0.00071192 440.79913693284465 2.7992 0.024176 2.7272 2.7064 2.7305 -0.072029 14 9 2 0 0 0 0.62242 1 1372 1372 0 0 1 137040 73663 4423 49355 50411 85584 85584 0.1347332432201256 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.79833984375 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 2.9582 1 2.8862 2.3862 3.3862 -0.072029 0 0 0 0.8622 1 1459 1459 0 0 1 73664 4423 49355 50411 85585 85585 0.1347332432201256 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.7987365722656 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 3.2931 1 3.221 2.721 3.721 -0.072029 0 0 0 0.8622 1 1622 1622 0 0 1 73665 4423 49355 50411 85586 85586 0.1347332432201256 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.7984619140625 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 4.6944 1 4.6881 4.1881 5.1881 -0.0062971 0 0 0 0.8622 1 2371 2371 0 0 1 73666 4423 49355 50411 85587 85587 0.1347332432201256 VVPLLLLGG 9 Unmodified _VVPLLLLGG_ 0 0 0 ENST00000585428.1_1_17:26988146-26988918:-|nuORF;ENSG00000132581|ENST00000247020|SDF2 ENST00000585428.1_1_17:26988146-26988918:-|nuORF ENST00000585428.1_1_17:26988146-26988918:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.7987060546875 2 440.796946 879.57934 NaN NaN NaN NaN NaN NaN NaN 5.2357 1 5.2368 4.7368 5.7368 0.0010915 0 0 0 0.8622 1 2639 2639 0 0 1 73667 4423 49355 50411 85588 85588 0.1347332432201256 VVPLPITTLL 10 Unmodified _VVPLPITTLL_ 0 0 0 REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3 REV__nc|ENSG00000213901|Q6PIS1-2|SLC23A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.903076171875 3 355.902121 1064.68453 NaN NaN NaN NaN NaN NaN NaN 47.182 1 47.148 46.648 47.648 -0.033417 0 0 0 0.98914 1 25411 25411 0.77653 0.37582 1 + 73668 24296 49356 50412 85589 85589 0.15477820727755898 VVPPGRAR 8 Unmodified _VVPPGRAR_ 0 0 0 REV__ENST00000592804.1_1_19:804936-805922:+|nuORF REV__ENST00000592804.1_1_19:804936-805922:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.2648010253906 2 426.264136 850.51372 0.67065 0.00028587 -0.65804 -0.0002805 0.012613 5.3765E-06 426.2639280740249 17.633 0.21157 15.047 14.925 15.136 -2.5866 62 37 2 0 0 0 0.78849 1 9182 9182 9.3474 0 1 9086200 + 73669 29182 49357 50413 85590 85590 0.08248347919652588 VVPPLALP 8 Unmodified _VVPPLALP_ 0 0 0 ENSG00000176692|ENST00000649859|FOXC2 ENSG00000176692|ENST00000649859|FOXC2 ENSG00000176692|ENST00000649859|FOXC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2632446289062 2 403.262739 804.510926 1.479 0.00059644 -0.20482 -8.2595E-05 1.2742 0.00051385 403.26257999168286 96.597 0.35191 90.421 90.253 90.605 -6.1757 59 20 4 0 0 0 0.81107 1 64068 64068 0 0 1 253320000 73670 8614 49358 50414 85591 85591 0.10085079742123071 VVPPRAGR 8 Unmodified _VVPPRAGR_ 0 0 0 nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74;nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;ENST00000403682.7_1_22:20748811-20761255:+|nuORF nc|ENSG00000185252|Q16587-3|ZNF74 nc|ENSG00000185252|Q16587-3|ZNF74 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.2651977539062 2 426.264136 850.51372 0.0878 3.7426E-05 1.6802 0.00071621 1.768 0.00075364 426.26480777772395 16.388 0.14944 16.393 16.323 16.473 0.0050564 19 9 3 0 0 0 0.78849 1 8215 8215 9.3474 0 1 1345000 73671 9352 49359 50415 85592 85592 0.08248347919663956 VVPQLLRQLK 10 Unmodified _VVPQLLRQLK_ 0 0 0 REV__ENSG00000095015|ENST00000399503|MAP3K1 REV__ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3905639648438 2 597.390065 1192.76558 1.08 0.00064521 -0.151 -9.0207E-05 0.92905 0.000555 597.3899434021429 106.07 1.4159 99.897 99.603 101.02 -6.1757 500 236 3 0 0 0 0.71123 1 71215 71215 1.6526 0 1 14298000 + 73672 17933 49360 50416 85593 85593 0.17690521490499123 VVPRINSRI 9 Unmodified _VVPRINSRI_ 0 0 0 ENSG00000136731|ENST00000259253|UGGT1;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENST00000438277.5_1_2:128855105-128928859:+|nuORF ENSG00000136731|ENST00000259253|UGGT1 ENSG00000136731|ENST00000259253|UGGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.330078125 2 527.330008 1052.64546 -0.62788 -0.0003311 0.81072 0.00042752 0.18284 9.6417E-05 527.330170395862 103.48 0.090286 103.43 103.36 103.45 -0.047928 7 3 3 0 0 0 0.62242 1 57477 57477 0 0 1 7346900 73673 4850 49361 50417 85594 85594 0.1212453321677458 VVPSGGFFPTI 11 Unmodified _VVPSGGFFPTI_ 0 0 0 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 ENSG00000167778|ENST00000301463|SPRYD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8047485351562 2 560.8055 1119.59645 1.4814 0.00083078 -0.075324 -4.2242E-05 1.4061 0.00078854 560.8052314521727 97.809 0.57912 91.633 91.421 92 -6.1757 58 37 2 0 0 0 0.18424 3 64886 64738;64749;64886 49.933 19.296 1 19838000 73674 7669 49362 50418 85595;85596;85597 85597 0.04143200137150416 VVPSSSPVFI 10 Unmodified _VVPSSSPVFI_ 0 0 0 REV__ENSG00000188649|ENST00000646931|CC2D2B REV__ENSG00000188649|ENST00000646931|CC2D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2923583984375 2 516.292225 1030.5699 0.38676 0.00019968 0.66159 0.00034157 1.0484 0.00054126 516.2923866124462 88.836 0.63882 88.332 88.068 88.707 -0.50423 82 27 4 0 0 0 0.66569 1 48490 48490 6.7232 0 1 3174500 + 73675 23722 49363 50419 85598 85598 0.05583511245822592 VVPVGDPA 8 Unmodified _VVPVGDPA_ 0 0 0 ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF ENST00000425085.1_1_21:24780104-24780850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.2100219726562 2 377.210704 752.406855 0.18758 7.0757E-05 0.17499 6.6007E-05 0.36257 0.00013676 377.21071455503284 51.612 0.3019 51.612 51.475 51.777 0 22 13 2 0 0 0 0.5953 1 28510 28510 26.341 1.6674 1 3538500 73676 13158 49364 50420 85599 85599 0.020747529146206034 VVPVIPVK 8 Unmodified _VVPVIPVK_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.7926635742188 2 425.791664 849.568775 NaN NaN NaN NaN NaN NaN NaN 4.0956 1 4.0228 3.5228 4.5228 -0.072869 0 0 0 0.97444 1 2023 2023 0 0 1 73677 6400 49365 50421 85600 85600 0.13797341667577712 VVQDHYVDW 9 Unmodified _VVQDHYVDW_ 0 0 0 ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.7721557617188 2 580.772188 1159.52982 0.56706 0.00032933 -0.37611 -0.00021843 0.19095 0.0001109 580.7720071570997 56.471 0.39162 56.402 56.266 56.658 -0.068741 43 19 3 0 0 0 0.25681 1 30794 30794 19.257 0 1 7064800 73678 6814 49366 50422 85601 85601 -0.043560354247802024 VVQDHYVDW 9 Unmodified _VVQDHYVDW_ 0 0 0 ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.7708740234375 2 580.772188 1159.52982 1.0811 0.0006279 -0.91728 -0.00053273 0.16386 9.5168E-05 580.7715537899287 58.452 0.29144 58.391 58.195 58.486 -0.060719 25 14 2 0 0 0 0.34999 1 31801 31801 14.838 0 1 3012400 73679 6814 49366 50422 85602 85602 -0.043560354247802024 VVQDHYVDW 9 Unmodified _VVQDHYVDW_ 0 0 0 ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 ENSG00000161904|ENST00000293760|LEMD2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 580.772188 1159.52982 2.0739 0.0012044 -0.37139 -0.00021569 1.7025 0.00098876 581.2733970629002 62.586 0.35531 56.41 56.23 56.586 -6.1757 0.0038195 3.5373E-06 NaN 19.257 22 17 2 NaN NaN NaN NaN 0 NaN NaN 0 14813000 73680 6814 49366 50422 -0.043560354247802024 VVQLEDIRL 9 Unmodified _VVQLEDIRL_ 0 0 0 REV__nc|ENSG00000104517|O95071-2|UBR5 REV__nc|ENSG00000104517|O95071-2|UBR5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2178039550781 3 362.21688 1083.62881 NaN NaN NaN NaN NaN NaN NaN 16.404 1 16.409 15.909 16.909 0.0050564 0 0 0 0.82739 1 8224 8224 1.0715 0.56551 1 + 73681 18361 49367 50423 85603 85603 0.09033987540124144 VVQLLKRHL 9 Unmodified _VVQLLKRHL_ 0 0 0 ENST00000419680.6_1_2:87769744-87772356:+|nuORF ENST00000419680.6_1_2:87769744-87772356:+|nuORF ENST00000419680.6_1_2:87769744-87772356:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3656616210938 2 553.36385 1104.71315 1.5925 0.00088125 0.38231 0.00021155 1.9748 0.0010928 553.3638464891354 106.7 0.40643 100.53 100.21 100.62 -6.1757 101 74 2 0 0 0 0.61381 1 71413 71413 0.52476 0 1 2930100 73682 13092 49368 50424 85604 85604 0.1649798314756481 VVQPSPAE 8 Unmodified _VVQPSPAE_ 0 0 0 REV__ENST00000396061.5_1_15:59949592-59949661:-|nuORF REV__ENST00000396061.5_1_15:59949592-59949661:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.7178039550781 2 413.718893 825.423233 NaN NaN NaN NaN NaN NaN NaN 51.519 1 51.465 50.965 51.965 -0.053871 0 0 0 0.96305 1 27891 27891 7.9102 0 1 + 73683 26496 49369 50425 85605 85605 0.0035383408070401856 VVQPVLAFT 9 Unmodified _VVQPVLAFT_ 0 0 0 REV__ENSG00000163884|ENST00000296233|KLF15 REV__ENSG00000163884|ENST00000296233|KLF15 MSMS AL20221201_MKP_PDAC_01 4 487.2911987304688 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 109.47 1 103.29 102.79 103.79 -6.1757 0 0 0 0.84737 1 73104 73104 1.8442 1.1539 1 + 73684 21829 49370 50426 85606 85606 0.07703832453978521 VVQWLVKR 8 Unmodified _VVQWLVKR_ 0 0 0 ENSG00000125633|ENST00000376300|CCDC93;CCDC93|p.N393Mfs*4|1|0.14|ENSG00000125633|chr2:117948151-117948151|T/-|frameshift_variant ENSG00000125633|ENST00000376300|CCDC93 ENSG00000125633|ENST00000376300|CCDC93 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3242797851562 2 514.324194 1026.63383 1.489 0.00076583 -0.87566 -0.00045037 0.61335 0.00031546 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.80992 1 73184 73184 0.69038 0 1 4939700 73685 3864 49371 50427 85607 85607 0.1215833619339719 VVRASRAM 8 Unmodified _VVRASRAM_ 0 0 0 nc|ENSG00000103202|O00746-2|NME4;ENST00000468031.1_1_16:449329-450339:+|nuORF;ENSG00000103202|ENST00000219479|NME4 nc|ENSG00000103202|O00746-2|NME4 nc|ENSG00000103202|O00746-2|NME4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 445.2558288574219 2 445.255454 888.496355 1.0471 0.00046623 -1.2152 -0.00054106 -0.16805 -7.4827E-05 445.25520452169434 34.758 0.55034 30.663 30.348 30.898 -4.0951 55 32 3 0 0 0 0.64853 1 20046 20046 21.747 5.8995 1 13719000 73686 2111 49372 50428 85608 85608 0.04764684322344692 VVRAVHVF 8 Unmodified _VVRAVHVF_ 0 0 0 ENSG00000170633|ENST00000361234|RNF34;nc|ENSG00000170633|Q969K3-2|RNF34 ENSG00000170633|ENST00000361234|RNF34 ENSG00000170633|ENST00000361234|RNF34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7834167480469 2 463.782162 925.549771 -0.01405 -6.5163E-06 1.179 0.0005468 1.165 0.00054029 463.78269467122226 32.738 0.32568 32.767 32.562 32.888 0.029747 32 13 3 0 0 0 0.80975 1 17155 17155 0.79363 0 1 13131000 73687 8010 49373 50429 85609 85609 0.08401805096514181 VVREICSKYIY 11 Unmodified _VVREICSKYIY_ 0 0 0 ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1;ENST00000480561.5_1_3:48636882-48638270:-|nuORF;ENST00000471189.5_1_3:48636563-48638429:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 687.370361328125 2 686.868305 1371.72206 1.3276 0.0009119 -0.67502 -0.00046365 0.6526 0.00044825 686.8677148717801 54.282 0.3045 48.417 48.211 48.516 -5.8653 20 17 2 0 0 0 0.58219 1 34399 34399 12.241 1.4411 1 11706000 73688 416 49374 50430 85610 85610 0.05106543931083252 VVRHQLLKT 9 Unmodified _VVRHQLLKT_ 0 0 0 COX7C|p.F53V|1|0.16|ENSG00000127184|chr5:86619434-86619434|T/G|missense_variant;ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF COX7C|p.F53V|1|0.16|ENSG00000127184|chr5:86619434-86619434|T/G|missense_variant COX7C|p.F53V|1|0.16|ENSG00000127184|chr5:86619434-86619434|T/G|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2336730957031 3 365.232864 1092.67676 1.3431 0.00049053 -0.081764 -2.9863E-05 1.2613 0.00046067 365.232837977135 18.364 0.30206 15.743 15.594 15.896 -2.6215 66 25 4 0 0 0 0.098164 2 9721 9619;9721 33.445 22.645 1 14394000 73689 217 49375 50431 85611;85612 85612 0.13413106250845885 VVRIHKAL 8 Unmodified _VVRIHKAL_ 0 0 0 REV__nc|ENSG00000149091|Q13574-6|DGKZ;REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__nc|ENSG00000149091|Q13574-6|DGKZ MSMS AL20221201_MKP_PDAC_01 4 468.3125610351562 2 468.311087 934.60762 NaN NaN NaN NaN NaN NaN NaN 104.69 1 98.518 98.018 99.018 -6.1757 0 0 0 0.97444 1 70094 70094 0.69038 0 1 + 73690 20978;28408 49376 50432 85613 85613 0.13770067021926025 VVRIITSEL 9 Unmodified _VVRIITSEL_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7472534179688 2 515.318774 1028.623 -0.060773 -3.1318E-05 0.39078 0.00020138 0.33001 0.00017006 515.3186172037607 54.551 0.15474 54.084 54.007 54.162 -0.46664 11 7 2 0 0 0 0.15936 1 29555 29555 27.629 13.723 1 1062900 73691 5671 49377 50433 85614 85614 0.10982889028446152 VVRIKRTTA 9 Unmodified _VVRIKRTTA_ 0 0 0 REV__ENST00000395067.6_1_9:103213293-103213446:+|nuORF REV__ENST00000395067.6_1_9:103213293-103213446:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.3394165039062 2 522.337833 1042.66111 1.659 0.00086657 1.1009 0.00057506 2.76 0.0014416 522.3379980016517 105.17 0.2973 98.993 98.828 99.125 -6.1757 238 57 6 0 0 0 0.61381 1 70495 70495 0.52476 0 1 18274000000 + 73692 26465 49378 50434 85615 85615 0.14148819733804885 VVRKKIVPL 9 Unmodified _VVRKKIVPL_ 0 0 0 REV__ENSG00000116221|ENST00000360840|MRPL37 REV__ENSG00000116221|ENST00000360840|MRPL37 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.369384765625 2 526.371144 1050.72774 NaN NaN NaN NaN NaN NaN NaN 0.6944 1 0.67378 0.17378 1.1738 -0.020623 0 0 0 0.8622 1 360 360 0 0 1 + 73693 19031 49379 50435 85616 85616 0.204400552956713 VVRLITHVLV 10 Unmodified _VVRLITHVLV_ 0 0 0 REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF REV__ENST00000554755.1_1_14:88420325-88420703:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8792724609375 2 574.879333 1147.74411 NaN NaN NaN NaN NaN NaN NaN 105.1 1 105.05 104.55 105.55 -0.048737 0 0 0 1.0061 1 58330 58330 0 0 1 + 73694 28758 49380 50436 85617 85617 0.17615136461768088 VVRLLRHK 8 Unmodified _VVRLLRHK_ 0 0 0 REV__ENSG00000154783|ENST00000285046|FGD5 REV__ENSG00000154783|ENST00000285046|FGD5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1021.180114746094 1 1020.67889 1019.67162 -0.25367 -0.00025891 -2.3713 -0.0024203 -2.6249 -0.0026792 1020.6756793459741 104.41 0.059494 104.37 104.32 104.38 -0.048737 6 4 2 0 0 0 8.7369 1 57973 57973 0 0 1 986140 + 73695 21247 49381 50437 85618 85618 0.16256847178874523 VVRLRERP 8 Unmodified _VVRLRERP_ 0 0 0 ENST00000487849.7_1_17:46669689-46683672:+|nuORF;ENST00000491264.5_1_17:46679554-46683672:+|nuORF ENST00000487849.7_1_17:46669689-46683672:+|nuORF ENST00000487849.7_1_17:46669689-46683672:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8248901367188 2 512.82235 1023.63015 1.4443 0.00074069 0.98368 0.00050445 2.428 0.0012451 512.8228019495036 106.35 0.47731 100.17 100.06 100.54 -6.1757 111 84 2 0 0 0 0.81007 1 71376 71376 0.6015 0 1 2703000 73696 14212 49382 50438 85619 85619 0.11927666419558136 VVRMGIYV 8 Unmodified _VVRMGIYV_ 0 0 0 ENSG00000067057|ENST00000381125|PFKP;ENST00000381075.6_1_10:3124581-3143118:+|nuORF ENSG00000067057|ENST00000381125|PFKP ENSG00000067057|ENST00000381125|PFKP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7721862792969 2 468.770406 935.526258 NaN NaN NaN NaN NaN NaN NaN 6.5014 1 6.4168 5.9168 6.9168 -0.08463 0 0 0 0.97444 1 3210 3210 0.79363 0 1 73697 946 49383 50439 85620 85620 0.0559162326767364 VVRNEQVEI 9 Unmodified _VVRNEQVEI_ 0 0 0 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 CON__Q2UVX4;ENSG00000125730|ENST00000245907|C3 ENSG00000125730|ENST00000245907|C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.3025512695312 2 543.301113 1084.58767 0.44639 0.00024253 1.1357 0.00061705 1.5821 0.00085958 543.3016268955481 47.374 0.28204 47.374 47.212 47.494 0 30 12 3 0 0 0 0.022193 1 25890 25890 61.357 1.2836 1 5510200 + 73698 3873;196 49384 50440 85621 85621 0.048762265006644157 VVRPGRGA 8 Unmodified _VVRPGRGA_ 0 0 0 ENST00000582766.5_1_17:43884387-43907895:+|nuORF ENST00000582766.5_1_17:43884387-43907895:+|nuORF ENST00000582766.5_1_17:43884387-43907895:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.2481689453125 2 406.248486 810.48242 0.095443 3.8774E-05 -0.0753 -3.0591E-05 0.020143 8.1831E-06 406.24833431583295 79.185 0.9113 79.24 78.809 79.72 0.054977 44 35 2 0 0 0 0.80992 1 43710 43710 0.69038 0 1 5406200 73699 15577 49385 50441 85622 85622 0.06959774885558545 VVRPIQLLLLL 11 Unmodified _VVRPIQLLLLL_ 0 0 0 ENST00000454498.6_1_8:19363479-19448754:-|nuORF ENST00000454498.6_1_8:19363479-19448754:-|nuORF ENST00000454498.6_1_8:19363479-19448754:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 638.9410400390625 2 638.939391 1275.86423 NaN NaN NaN NaN NaN NaN NaN 89.807 1 89.305 88.805 89.805 -0.50171 0 0 0 0.9435 1 49096 49096 0 0 1 73700 13573 49386 50442 85623 85623 0.23733124735554156 VVRPLGQVL 9 Unmodified _VVRPLGQVL_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.8172302246094 2 490.816202 979.617851 0.24909 0.00012226 -0.11806 -5.7947E-05 0.13103 6.4312E-05 490.8160831547799 51.641 0.25603 51.582 51.376 51.632 -0.058918 16 12 2 0 0 0 0.070838 1 27981 27981 39.957 23.015 1 1232800 73701 7991 49387 50443 85624 85624 0.127226299565109 VVRRGPNP 8 Unmodified _VVRRGPNP_ 0 0 0 ENST00000460115.5_1_17:41277685-41277766:+|nuORF ENST00000460115.5_1_17:41277685-41277766:+|nuORF ENST00000460115.5_1_17:41277685-41277766:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 447.766845703125 2 447.767043 893.519533 0.51481 0.00023051 -0.2088 -9.3493E-05 0.30601 0.00013702 447.7669167788044 28.614 0.21262 28.643 28.494 28.706 0.029566 10 7 2 0 0 0 0.78849 1 14888 14888 9.3474 0 1 2858900 73702 13636 49388 50444 85625 85625 0.06851446431312525 VVRRKPRF 8 Unmodified _VVRRKPRF_ 0 0 0 ENST00000355451.7_1_7:44424886-44425042:-|nuORF ENST00000355451.7_1_7:44424886-44425042:-|nuORF ENST00000355451.7_1_7:44424886-44425042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.339599609375 2 529.34071 1056.66687 -0.60879 -0.00032226 -1.0965 -0.00058042 -1.7053 -0.00090268 529.3397784626083 102.8 0.34943 102.75 102.6 102.95 -0.047928 28 12 3 0 0 0 0.80975 1 57192 57192 0.79363 0 1 2412800 73703 12076 49389 50445 85626 85626 0.14079963036101617 VVRRRANLLKK 11 Unmodified _VVRRRANLLKK_ 0 0 0 REV__ENST00000478558.1_1_1:153631742-153633774:+|nuORF REV__ENST00000478558.1_1_1:153631742-153633774:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 676.9509887695312 2 676.951687 1351.88882 NaN NaN NaN NaN NaN NaN NaN 95.509 1 95.141 94.641 95.641 -0.36814 0 0 0 0.9435 1 52167 52167 0 0 1 + 73704 20653 49390 50446 85627 85627 0.22695197661619204 VVRSRLLLL 9 Unmodified _VVRSRLLLL_ 0 0 0 ENST00000594676.1_1_19:40023193-40023817:+|nuORF ENST00000594676.1_1_19:40023193-40023817:+|nuORF ENST00000594676.1_1_19:40023193-40023817:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.86767578125 2 534.866226 1067.7179 1.5062 0.00080559 0.0054078 2.8925E-06 1.5116 0.00080848 534.8666969338445 105.64 0.16796 99.463 99.359 99.527 -6.1757 17 12 2 0 0 0 0.62242 1 70780 70780 0 0 1 3196100 73705 15750 49391 50447 85628 85628 0.18674867290337716 VVRTLLARLA 10 Unmodified _VVRTLLARLA_ 0 0 0 nc|ENSG00000183876|Q5FYB1-2|ARSI;ENSG00000183876|ENST00000328668|ARSI nc|ENSG00000183876|Q5FYB1-2|ARSI nc|ENSG00000183876|Q5FYB1-2|ARSI MSMS AL20221201_MKP_PDAC_01 4 556.3692626953125 2 556.369133 1110.72371 NaN NaN NaN NaN NaN NaN NaN 106.44 1 100.27 99.767 100.77 -6.1757 0 0 0 1.0061 1 71249 71249 0 0 1 73706 9208 49392 50448 85629 85629 0.1727796580200902 VVRTTAATTLG 11 Unmodified _VVRTTAATTLG_ 0 0 0 REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF REV__ENST00000472267.5_1_6:30587464-30587587:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3162231445312 2 545.316763 1088.61897 0.1985 0.00010824 -0.3323 -0.00018121 -0.1338 -7.2962E-05 545.3167864843695 94.004 0.37306 93.584 93.37 93.743 -0.42044 35 18 3 0 0 0 0.7453 1 51286 51286 0 0 1 1401100 + 73707 27513 49393 50449 85630 85630 0.07820799534738399 VVSAKLKLFAF 11 Unmodified _VVSAKLKLFAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.25732421875 3 408.256787 1221.74853 0.32964 0.00013458 0.89893 0.00036699 1.2286 0.00050157 408.25711432772937 69.005 0.27914 69.036 68.908 69.187 0.030914 32 13 4 0 0 0 0.54936 1 37949 37949 14.957 9.9096 1 4396700 73708 8124 49394 50450 85631 85631 0.14652600884687672 VVSAKLKLFAF 11 Unmodified _VVSAKLKLFAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2586364746094 3 408.256787 1221.74853 1.1399 0.00046536 1.1042 0.00045079 2.2441 0.00091615 408.25739538460914 95.006 0.37805 88.83 88.693 89.071 -6.1757 30 13 3 0 0 0 0.24216 1 62899 62899 23.964 16.927 1 31114000 73709 8124 49394 50450 85632 85632 0.14652600884687672 VVSAKLKLFAF 11 Unmodified _VVSAKLKLFAF_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.881591796875 2 611.881542 1221.74853 0.95378 0.0005836 0.72821 0.00044558 1.682 0.0010292 611.8821489174874 95.004 0.14286 88.829 88.748 88.891 -6.1757 10 7 2 0 0 0 0.038834 1 62948 62948 53.317 43.934 1 6250400 73710 8124 49394 50450 85633 85633 0.14652600884687672 VVSETPHP 8 Unmodified _VVSETPHP_ 0 0 0 ENST00000376387.4_1_13:100153672-100153861:+|nuORF ENST00000376387.4_1_13:100153672-100153861:+|nuORF ENST00000376387.4_1_13:100153672-100153861:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.2248229980469 2 433.224342 864.434132 0.73947 0.00032036 -0.56576 -0.0002451 0.17371 7.5255E-05 433.2241456095658 46.062 0.3494 46.062 45.882 46.232 0 36 16 3 0 0 0 0.61462 1 25190 25190 24.674 5.2349 1 8894900 73711 12492 49395 50451 85634 85634 -0.0035076354499778972 VVSLRALL 8 Unmodified _VVSLRALL_ 0 0 0 ENST00000413209.6_1_22:30093941-30094187:+|nuORF ENST00000413209.6_1_22:30093941-30094187:+|nuORF ENST00000413209.6_1_22:30093941-30094187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.5780029296875 1 870.577114 869.569838 1.4803 0.0012887 0.90299 0.00078612 2.3833 0.0020749 870.577827616303 107.09 0.52301 100.91 100.43 100.95 -6.1757 147 99 2 0 0 0 0.80975 3 71372 71372;71477;71580 0.79363 0 1 3392800 73712 12995 49396 50452 85635;85636;85637 85635 0.12983556036476784 VVSLRALL 8 Unmodified _VVSLRALL_ 0 0 0 ENST00000413209.6_1_22:30093941-30094187:+|nuORF ENST00000413209.6_1_22:30093941-30094187:+|nuORF ENST00000413209.6_1_22:30093941-30094187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 870.5789794921875 1 870.577114 869.569838 1.48 0.0012885 0.54092 0.00047091 2.021 0.0017594 870.577454834179 108.15 2.3415 101.97 100.95 103.29 -6.1757 714 428 2 0 0 0 0.80975 11 71689 71689;71796;72015;72122;72227;72335;72555;72660;72765;72873;72981 0.79363 0 1 9076000 73713 12995 49396 50452 85638;85639;85640;85641;85642;85643;85644;85645;85646;85647;85648 85638 0.12983556036476784 VVSNAGLF 8 Unmodified _VVSNAGLF_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.7251586914062 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 0.16141 1 0.13934 -0.36066 0.63934 -0.022065 0 0 0 0.97444 1 88 88 0.79363 0 1 73714 663 49397 50453 85649 85649 0.02290441805962473 VVSNAGLF 8 Unmodified _VVSNAGLF_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.7245483398438 2 403.723978 805.433404 NaN NaN NaN NaN NaN NaN NaN 0.33717 1 0.3151 -0.1849 0.8151 -0.022065 0 0 0 0.97444 1 182 182 0.79363 0 1 73715 663 49397 50453 85650 85650 0.02290441805962473 VVSNLLFE 8 Unmodified _VVSNLLFE_ 0 0 0 nc|ENSG00000118322|O94823-3|ATP10B nc|ENSG00000118322|O94823-3|ATP10B nc|ENSG00000118322|O94823-3|ATP10B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.776123046875 2 460.758018 919.501483 0.68365 0.000315 -0.35688 -0.00016443 0.32677 0.00015056 460.75772884165065 49.969 0.17551 49.577 49.412 49.588 -0.3923 10 8 2 0 0 0 8.7369 1 26822 26822 21.747 0 1 1464100 73716 16150 49398 50454 85651 85651 0.038512666659471506 VVSPLLGG 8 Unmodified _VVSPLLGG_ 0 0 0 nc|ENSG00000185379|O75771-5|RAD51D;nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.2304077148438 2 371.228897 740.44324 0.40192 0.0001492 2.5215 0.00093607 2.9234 0.0010853 371.2295469411346 69.374 0.67736 69.405 68.799 69.476 0.030914 51 35 2 0 0 0 0.81107 2 38039 38039;38139 0 0 1 27927000 73717 16458 49399 50455 85652;85653 85652 0.06263629811337523 VVSPLLGG 8 Unmodified _VVSPLLGG_ 0 0 0 nc|ENSG00000185379|O75771-5|RAD51D;nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 371.228897 740.44324 0.043562 1.6172E-05 2.4547 0.00091124 2.4982 0.00092741 371.22946364274395 69.733 0.68581 69.733 69.269 69.955 0 0.15876 0.00016638 NaN 0 58 31 3 NaN NaN NaN NaN 0 NaN NaN 0 2395700 73718 16458 49399 50455 0.06263629811337523 VVSPLLGG 8 Unmodified _VVSPLLGG_ 0 0 0 nc|ENSG00000185379|O75771-5|RAD51D;nc|ENSG00000185379|O75771-3|RAD51D;nc|ENSG00000185379|O75771-4|RAD51D;ENSG00000185379|ENST00000345365|RAD51D;nc|ENSG00000185379|O75771-8|RAD51D nc|ENSG00000185379|O75771-5|RAD51D nc|ENSG00000185379|O75771-5|RAD51D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 371.228897 740.44324 0.048258 1.7915E-05 0.84633 0.00031418 0.89459 0.0003321 371.22906456273705 70.065 0.37729 69.586 69.536 69.914 -0.47903 0.010812 -0.0010277 NaN 0 29 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2337100 73719 16458 49399 50455 0.06263629811337523 VVSRILMAAP 10 Unmodified _VVSRILMAAP_ 0 0 0 ENST00000515736.2_1_5:174938457-174940595:+|nuORF;ENST00000507823.5_1_5:174919260-174949462:+|nuORF;ENSG00000164466|ENST00000321442|SFXN1 ENST00000515736.2_1_5:174938457-174940595:+|nuORF ENST00000515736.2_1_5:174938457-174940595:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8787841796875 3 352.879322 1055.61614 0.51808 0.00018282 -1.5449 -0.00054516 -1.0268 -0.00036234 352.8788578940726 47.585 0.42367 47.547 47.177 47.6 -0.038643 33 19 3 0 0 0 0.70951 1 25630 25630 0.77653 0 1 1924200 73720 7200 49400 50456 85654 85654 0.09055252876237319 VVSRIRAAL 9 Unmodified _VVSRIRAAL_ 0 0 0 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 ENSG00000109062|ENST00000262613|NHERF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.820556640625 2 492.819276 983.623999 1.3489 0.00066478 0.1588 7.8258E-05 1.5077 0.00074303 492.8194220644328 34.036 0.41419 30.05 29.785 30.199 -3.9853 54 22 3 0 0 0 0.07916 2 19490 19490;19611 37.974 23.136 1 20576000 73721 2624 49401 50457 85655;85656 85655 0.13153148188007435 VVSRKRKAP 9 Unmodified _VVSRKRKAP_ 0 0 0 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 ENSG00000198876|ENST00000361264|DCAF12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8378295898438 2 520.838 1039.66145 NaN NaN NaN NaN NaN NaN NaN 104.26 1 104.21 103.71 104.71 -0.048737 0 0 0 0.8622 1 57886 57886 0 0 1 73722 10182 49402 50458 85657 85657 0.14320239453627437 VVSRLKKAKR 10 Unmodified _VVSRLKKAKR_ 0 0 0 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 ENSG00000204186|ENST00000374423|ZDBF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1185.623168945312 1 1184.79499 1183.78771 0.013057 1.547E-05 -0.29236 -0.00034638 -0.2793 -0.00033091 1185.800895683961 43.506 0.066845 43.196 43.164 43.231 -0.31039 4 2 2 0 0 0 0.72607 1 23146 23146 0 0 1 11063000 73723 10250 49403 50459 85658 85658 0.20316745958916727 VVSSRKGH 8 Unmodified _VVSSRKGH_ 0 0 0 ENST00000550071.1_1_12:56661074-56663089:+|nuORF;nc|ENSG00000135469|Q96MF6-3|COQ10A;ENST00000551911.5_1_12:56660746-56663089:+|nuORF;nc|ENSG00000135469|Q96MF6-2|COQ10A;ENSG00000135469|ENST00000308197|COQ10A ENST00000550071.1_1_12:56661074-56663089:+|nuORF ENST00000550071.1_1_12:56661074-56663089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.2516479492188 2 435.251226 868.487899 0.36587 0.00015924 0.97224 0.00042317 1.3381 0.00058241 435.2515589287473 79.736 0.76324 79.791 79.284 80.047 0.05497 49 29 2 0 0 0 0.80975 1 44184 44184 0.79363 0 1 4579700 73724 4710 49404 50460 85659 85659 0.04839453677379879 VVSSTPRLTTS 11 Unmodified _VVSSTPRLTTS_ 0 0 0 nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 nc|ENSG00000132313|Q9NZE8-2|MRPL35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.3186645507812 2 574.319502 1146.62445 0.52091 0.00029917 -0.20789 -0.00011939 0.31302 0.00017977 574.3192570309849 97.319 0.28261 97.076 96.886 97.169 -0.24277 23 12 2 0 0 0 0.7453 1 53101 53101 0 0 1 1016000 73725 4388 49405 50461 85660 85660 0.05700478326548364 VVSVSAVTWH 10 Unmodified _VVSVSAVTWH_ 0 0 0 REV__ENSG00000024048|ENST00000372901|UBR2 REV__ENSG00000024048|ENST00000372901|UBR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.79443359375 2 542.792924 1083.57129 0.62244 0.00033786 0.41778 0.00022677 1.0402 0.00056462 543.2941933526544 42.903 0.23979 42.891 42.742 42.982 -0.011959 16 10 2 0 0 0 0.67033 1 23002 23002 6.2058 2.6093 1 2248400 + 73726 17125 49406 50462 85661 85661 0.032851453345756454 VVSWSPPAGDW 11 Unmodified _VVSWSPPAGDW_ 0 0 0 nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB;nc|ENSG00000127329|P23467-4|PTPRB;ENST00000538174.6_1_12:70979073-71031175:-|nuORF nc|ENSG00000127329|P23467|PTPRB nc|ENSG00000127329|P23467|PTPRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.7886352539062 2 600.787838 1199.56112 0.3566 0.00021424 2.0183 0.0012126 2.3749 0.0014268 600.7888552130128 57.966 0.714 57.476 57.126 57.84 -0.48974 76 34 3 0 0 0 0.65108 1 31478 31478 8.7454 0.83525 1 6405400 73727 3998 49407 50463 85662 85662 -0.030674623906861598 VVSWYFSKL 9 Unmodified _VVSWYFSKL_ 0 0 0 REV__ENST00000488234.1_1_2:84660404-84668204:-|nuORF REV__ENST00000488234.1_1_2:84660404-84668204:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3080444335938 2 564.808042 1127.60153 0.45625 0.00025769 2.6014 0.0014693 3.0576 0.001727 564.809540762388 52.885 0.4031 52.885 52.636 53.039 0 33 18 2 0 0 0 0.19298 1 29325 29325 13.508 4.1248 1 3008700 + 73728 27839 49408 50464 85663 85663 0.0428350399977262 VVTAGALCCY 10 Unmodified _VVTAGALCCY_ 0 0 0 ENST00000489684.2_1_3:49044864-49050780:+|nuORF;ENST00000420783.7_1_3:49050474-49050594:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF ENST00000489684.2_1_3:49044864-49050780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7367553710938 2 500.235538 998.456524 0.17824 8.9161E-05 -2.2724 -0.0011367 -2.0942 -0.0010476 500.73715379071257 93.072 0.2489 92.615 92.501 92.75 -0.4574 25 12 3 0 0 0 0.70951 1 50852 50852 1.8442 1.0506 1 495080 73729 14244 49409 50465 85664 85664 -0.04276623463249507 VVTDPAGC 8 Unmodified _VVTDPAGC_ 0 0 0 ENST00000482320.5_1_7:128658104-128681743:-|nuORF ENST00000482320.5_1_7:128658104-128681743:-|nuORF ENST00000482320.5_1_7:128658104-128681743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1768798828125 2 381.178546 760.34254 NaN NaN NaN NaN NaN NaN NaN 23.596 1 23.596 23.096 24.096 0 0 0 0 0.97444 1 12032 12032 0.79363 0 1 73730 14101 49410 50466 85665 85665 -0.04721770233845746 VVTDRYGYNE 10 Unmodified _VVTDRYGYNE_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.9009399414062 3 405.859532 1214.55677 0.047531 1.9291E-05 0.56208 0.00022813 0.60961 0.00024742 406.1942353947015 48.76 0.23706 48.716 48.573 48.81 -0.04369 24 11 3 0 0 0 0.23895 1 26283 26283 4.1895 0 1 4306500 + 73731 21951 49411 50467 85666 85666 -0.04192971604265949 VVTDSSGSGTL 11 Unmodified _VVTDSSGSGTL_ 0 0 0 INF2|p.A1197V|1|0.17|ENSG00000203485|chr14:104714752-104714752|C/T|missense_variant INF2|p.A1197V|1|0.17|ENSG00000203485|chr14:104714752-104714752|C/T|missense_variant INF2|p.A1197V|1|0.17|ENSG00000203485|chr14:104714752-104714752|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7537231445312 2 511.753661 1021.49277 NaN NaN NaN NaN NaN NaN NaN 14.539 1 14.508 14.008 15.008 -0.030868 0 0 0 0.9435 1 7081 7081 0 0 1 73732 15932 49412 50468 85667 85667 -0.0171175176116094 VVTELGPG 8 Unmodified _VVTELGPG_ 0 0 0 ENSG00000139438|ENST00000538780|FAM222A ENSG00000139438|ENST00000538780|FAM222A ENSG00000139438|ENST00000538780|FAM222A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2163391113281 2 386.215986 770.417419 NaN NaN NaN NaN NaN NaN NaN 50.783 1 50.729 50.229 51.229 -0.053871 0 0 0 0.97444 1 27468 27468 2.3027 0 1 73733 5158 49413 50469 85668 85668 0.023027355690601325 VVTGRGRI 8 Unmodified _VVTGRGRI_ 0 0 0 ENST00000475214.5_1_3:135974226-136045892:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB ENST00000475214.5_1_3:135974226-136045892:+|nuORF ENST00000475214.5_1_3:135974226-136045892:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.2711791992188 2 429.269419 856.524284 1.4985 0.00064328 2.8753 0.0012343 4.3738 0.0018775 429.2707218168453 95.632 0.21764 89.457 89.351 89.569 -6.1757 19 13 2 0 0 0 0.63229 1 63367 63367 23.148 0 1 10444000 73734 3015 49414 50470 85669 85669 0.0902833057408543 VVTIVLAL 8 Unmodified _VVTIVLAL_ 0 0 0 ENST00000587992.1_1_19:10444535-10445133:-|nuORF;ENSG00000076662|ENST00000160262|ICAM3 ENST00000587992.1_1_19:10444535-10445133:-|nuORF ENST00000587992.1_1_19:10444535-10445133:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.56005859375 1 827.560067 826.552791 -0.38948 -0.00032232 -0.01231 -1.0187E-05 -0.40179 -0.00033251 827.5602430350499 103.58 0.079842 103.53 103.49 103.57 -0.047928 4 2 2 0 0 0 0.81107 1 57540 57540 0 0 1 2973100 73735 1190 49415 50471 85670 85670 0.13257635430636583 VVTKGLIRYIK 11 Unmodified _VVTKGLIRYIK_ 0 0 0 REV__nc|ENSG00000102893|Q93100-4|PHKB REV__nc|ENSG00000102893|Q93100-4|PHKB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 645.4178466796875 2 645.418823 1288.82309 NaN NaN NaN NaN NaN NaN NaN 72.889 1 72.889 72.389 73.389 0 0 0 0 0.94165 1 40583 40583 1.3295 0 1 + 73736 18264 49416 50472 85671 85671 0.19023363696078377 VVTKIKRTK 9 Unmodified _VVTKIKRTK_ 0 0 0 REV__ENSG00000171431|ENST00000167588|KRT20 REV__ENSG00000171431|ENST00000167588|KRT20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.3551635742188 2 536.863683 1071.71281 -0.59607 -0.00032001 -0.98403 -0.00052829 -1.5801 -0.00084829 536.8636647664241 103.78 0.11195 103.73 103.64 103.76 -0.048737 7 4 2 0 0 0 0.2191 1 57627 57627 0 0 1 1462200 + + 73737 16854 49417 50473 85672 85672 0.17982563427676723 VVTKVLSLTT 10 Unmodified _VVTKVLSLTT_ 0 0 0 REV__ENSG00000064547|ENST00000407877|LPAR2 REV__ENSG00000064547|ENST00000407877|LPAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2251892089844 3 354.225264 1059.65396 NaN NaN NaN NaN NaN NaN NaN 82.554 1 82.059 81.559 82.559 -0.4952 0 0 0 1.0061 1 45193 45193 0 0 1 + 73738 17356 49418 50474 85673 85673 0.1265204234268822 VVTKVLSLTT 10 Unmodified _VVTKVLSLTT_ 0 0 0 REV__ENSG00000064547|ENST00000407877|LPAR2 REV__ENSG00000064547|ENST00000407877|LPAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2249755859375 3 354.225264 1059.65396 NaN NaN NaN NaN NaN NaN NaN 82.746 1 82.248 81.748 82.748 -0.49751 0 0 0 1.0061 1 45297 45297 0 0 1 + 73739 17356 49418 50474 85674 85674 0.1265204234268822 VVTKVLSLTT 10 Unmodified _VVTKVLSLTT_ 0 0 0 REV__ENSG00000064547|ENST00000407877|LPAR2 REV__ENSG00000064547|ENST00000407877|LPAR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.2256164550781 3 354.225264 1059.65396 NaN NaN NaN NaN NaN NaN NaN 83.476 1 82.978 82.478 83.478 -0.49751 0 0 0 1.0061 1 45692 45692 0 0 1 + 73740 17356 49418 50474 85675 85675 0.1265204234268822 VVTLASIFSI 10 Unmodified _VVTLASIFSI_ 0 0 0 REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF REV__ENST00000573688.1_1_16:21185451-21188607:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.315673828125 2 525.3157 1048.61685 0.62476 0.00032819 0.61458 0.00032285 1.2393 0.00065104 525.3157464394571 74.672 0.19304 74.196 74.133 74.326 -0.47588 14 7 2 0 0 0 0.62068 1 40892 40892 10.074 0 1 369510 + 73741 28999 49419 50475 85676 85676 0.09448370796940253 VVTMAILCCS 10 Unmodified _VVTMAILCCS_ 0 0 0 nc|ENSG00000165186|Q96NR3-3|PTCHD1;nc|ENSG00000165186|Q96NR3-2|PTCHD1;ENSG00000165186|ENST00000379361|PTCHD1 nc|ENSG00000165186|Q96NR3-3|PTCHD1 nc|ENSG00000165186|Q96NR3-3|PTCHD1 MSMS AL20221201_MKP_PDAC_01 4 520.2508544921875 2 520.252874 1038.49119 NaN NaN NaN NaN NaN NaN NaN 102.54 1 96.367 95.867 96.867 -6.1757 0 0 0 0.8671 1 68807 68807 9.3831 0.78985 1 73742 7306 49420 50476 85677 85677 -0.026511236467968047 VVTPLPAA 8 Unmodified _VVTPLPAA_ 0 0 0 REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF REV__ENST00000461141.5_1_3:183952309-183959823:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.9579467773438 2 384.236722 766.45889 0.15896 6.1078E-05 -1.4557 -0.00055932 -1.2967 -0.00049824 384.23603912969287 75.702 0.68346 75.75 75.205 75.888 0.047943 39 31 2 0 0 0 8.7369 1 41524 41524 0 0 1 1628500 + 73743 20758 49421 50477 85678 85678 0.06631916328353782 VVTPPLAI 8 Unmodified _VVTPPLAI_ 0 0 0 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2601928710938 2 405.260197 808.50584 0.017244 6.9884E-06 -1.7589 -0.00071282 -1.7417 -0.00070583 405.2595346756989 94.21 0.44452 94.21 94.06 94.504 0 38 34 2 0 0 0 0.81107 1 52083 52083 0 0 1 233100 + 73744 22027 49422 50478 85679 85679 0.09392775879496185 VVTPPLAI 8 Unmodified _VVTPPLAI_ 0 0 0 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 REV__nc|ENSG00000165626|Q8N7W2-2|BEND7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2593688964844 2 405.260197 808.50584 NaN NaN NaN NaN NaN NaN NaN 96.405 1 96.1 95.6 96.6 -0.30472 0 0 0 0.97444 1 52649 52649 0 0 1 + 73745 22027 49422 50478 85680 85680 0.09392775879496185 VVTPPLPA 8 Unmodified _VVTPPLPA_ 0 0 0 ENST00000432329.6_1_2:208467595-208467667:+|nuORF ENST00000432329.6_1_2:208467595-208467667:+|nuORF ENST00000432329.6_1_2:208467595-208467667:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5364074707031 2 397.244547 792.47454 NaN NaN NaN NaN NaN NaN NaN 32.04 1 32.07 31.57 32.57 0.030106 0 0 0 0.97444 1 16810 16810 4.756 2.1785 1 73746 13276 49423 50479 85681 85681 0.07000202845404147 VVTPQLVY 8 Unmodified _VVTPQLVY_ 0 0 0 REV__ENST00000265138.3_1_5:90666510-90666594:-|nuORF REV__ENST00000265138.3_1_5:90666510-90666594:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 459.7156372070312 2 459.768386 917.522219 0.56874 0.00026149 -1.054 -0.00048461 -0.48529 -0.00022312 459.76783662754656 73.708 0.34325 73.232 73.018 73.362 -0.47588 21 14 2 0 0 0 8.7369 1 40249 40249 5.2307 0 1 1084300 + 73747 25088 49424 50480 85682 85682 0.060158570455996596 VVTQFSTVL 9 Unmodified _VVTQFSTVL_ 0 0 0 ENST00000398316.7_1_13:49705333-49705405:+|nuORF ENST00000398316.7_1_13:49705333-49705405:+|nuORF ENST00000398316.7_1_13:49705333-49705405:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 496.7626647949219 2 497.2844 992.554247 1.2208 0.00060709 0.32563 0.00016193 1.5464 0.00076902 497.28443862332153 55.289 0.26641 49.368 49.223 49.49 -5.9211 27 16 2 0 0 0 0.16418 1 35173 35173 19.257 0 1 13718000 73748 12847 49425 50481 85683 85683 0.05767224728754172 VVTSPMRYLY 10 Unmodified _VVTSPMRYLY_ 0 0 0 REV__ENST00000581471.2_1_18:5239065-5239173:+|nuORF REV__ENST00000581471.2_1_18:5239065-5239173:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.8218994140625 2 614.823366 1227.63218 NaN NaN NaN NaN NaN NaN NaN 66.53 1 66.046 65.546 66.546 -0.48323 0 0 0 0.97302 1 36333 36333 3.5965 0 1 + 73749 29066 49426 50482 85684 85684 0.027469143225061998 VVTTNLKLR 9 Unmodified _VVTTNLKLR_ 0 0 0 ENST00000563131.2_1_15:89744727-89744991:-|nuORF;ENST00000577901.5_1_18:9914253-9936249:+|nuORF;ENSG00000101558|ENST00000400000|VAPA;nc|ENSG00000101558|Q9P0L0-2|VAPA ENST00000563131.2_1_15:89744727-89744991:-|nuORF ENST00000563131.2_1_15:89744727-89744991:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.3327026367188 2 522.332216 1042.64988 0.23208 0.00012122 -0.053253 -2.7816E-05 0.17882 9.3405E-05 522.3321952740152 102.25 0.31841 102.13 101.98 102.3 -0.11613 19 14 2 0 0 0 0.62242 1 55811 55811 0 0 1 336180 73750 1977 49427 50483 85685 85685 0.1302599763962462 VVTVGVITVL 10 Unmodified _VVTVGVITVL_ 0 0 0 ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 999.6452026367188 1 999.644859 998.637583 1.4303 0.0014298 -0.36136 -0.00036123 1.0689 0.0010685 999.6442096975326 105.2 0.26675 99.02 98.841 99.108 -6.1757 147 52 4 0 0 0 0.72607 2 70356 70356;70504 0 0 1 819030000 73751 9551 49428 50484 85686;85687 85686 0.13820961176588753 VVTVGVITVL 10 Unmodified _VVTVGVITVL_ 0 0 0 ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC ENSG00000187323|ENST00000442544|DCC MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.3264770507812 2 500.326068 998.637583 1.7012 0.00085114 -1.1403 -0.00057054 0.56083 0.0002806 500.325109543646 105.2 0.29994 99.021 98.856 99.156 -6.1757 249 61 6 0 0 0 0.72607 1 70506 70506 0 0 1 16160000000 73752 9551 49428 50484 85688 85688 0.13820961176588753 VVTVQSAP 8 Unmodified _VVTVQSAP_ 0 0 0 REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.7293701171875 2 400.729261 799.443968 -0.2468 -9.8899E-05 -0.097206 -3.8953E-05 -0.344 -0.00013785 400.7292482620339 52.222 0.36293 52.222 52.039 52.402 0 32 15 3 0 0 0 0.23628 1 28855 28855 64.236 11.968 1 4794700 + 73753 25857 49429 50485 85689 85689 0.036224244603772604 VVTVQSAP 8 Unmodified _VVTVQSAP_ 0 0 0 REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.7289733886719 2 400.729261 799.443968 0.45395 0.00018191 -0.63614 -0.00025492 -0.18218 -7.3005E-05 400.72899881441845 52.702 0.33585 52.252 52.085 52.42 -0.45031 26 16 2 0 0 0 0.23628 2 28452 28452;28563 64.236 11.968 1 4597700 + 73754 25857 49429 50485 85690;85691 85690 0.036224244603772604 VVTVQSAP 8 Unmodified _VVTVQSAP_ 0 0 0 REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.729736328125 2 400.729261 799.443968 1.0833 0.0004341 0.29937 0.00011997 1.3826 0.00055406 400.72925932634075 59.366 0.37283 53.251 53.06 53.433 -6.1147 29 20 2 0 0 0 0.30525 1 38090 38090 54.774 1.198 1 21225000 + 73755 25857 49429 50485 85692 85692 0.036224244603772604 VVTVQSAP 8 Unmodified _VVTVQSAP_ 0 0 0 REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 400.729261 799.443968 -0.2468 -9.8899E-05 -0.097206 -3.8953E-05 -0.344 -0.00013785 400.7292482620339 52.222 0.36293 52.222 52.039 52.402 0 -0.014738 0.00023932 NaN 64.236 32 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4794700 + 73756 25857 49429 50485 0.036224244603772604 VVTVQSAP 8 Unmodified _VVTVQSAP_ 0 0 0 REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF REV__ENST00000357700.10_1_10:5681946-5682531:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 400.729261 799.443968 0.45395 0.00018191 -0.63614 -0.00025492 -0.18218 -7.3005E-05 400.72899881441845 52.702 0.33585 52.252 52.085 52.42 -0.45031 0.014738 -0.00019261 NaN 64.236 26 16 2 NaN NaN NaN NaN 0 NaN NaN 0 4597700 + 73757 25857 49429 50485 0.036224244603772604 VVTYWDEL 8 Unmodified _VVTYWDEL_ 0 0 0 REV__nc|ENSG00000157869|P51157-3|RAB28 REV__nc|ENSG00000157869|P51157-3|RAB28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7526245117188 2 512.752933 1023.49131 0.25395 0.00013021 -1.1298 -0.00057931 -0.87586 -0.0004491 513.2533636538187 81.879 0.18758 81.879 81.782 81.969 0 14 11 2 0 0 0 0.80975 1 45464 45464 0.79363 0 1 411360 + 73758 21405 49430 50486 85693 85693 -0.019493410592986038 VVTYWDEL 8 Unmodified _VVTYWDEL_ 0 0 0 REV__nc|ENSG00000157869|P51157-3|RAB28 REV__nc|ENSG00000157869|P51157-3|RAB28 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 512.752933 1023.49131 0.25395 0.00013021 -1.1298 -0.00057931 -0.87586 -0.0004491 513.2533636538187 81.879 0.18758 81.879 81.782 81.969 0 0 0 NaN 0.79363 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 411360 + 73759 21405 49430 50486 -0.019493410592986038 VVVDPKPV 8 Unmodified _VVVDPKPV_ 0 0 0 REV__nc|ENSG00000067177|P46020-3|PHKA1 REV__nc|ENSG00000067177|P46020-3|PHKA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.7636413574219 2 426.763104 851.511654 NaN NaN NaN NaN NaN NaN NaN 77.896 1 77.896 77.396 78.396 0 0 0 0 0.97444 1 43300 43300 0.6015 0 1 + 73760 17416 49431 50487 85694 85694 0.07995874391190227 VVVDRKHVPEE 11 Unmodified _VVVDRKHVPEE_ 0 0 0 ENSG00000108578|ENST00000261714|BLMH;ENST00000578795.1_1_17:28576037-28576226:-|nuORF ENSG00000108578|ENST00000261714|BLMH ENSG00000108578|ENST00000261714|BLMH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.2427368164062 3 436.241976 1305.7041 NaN NaN NaN NaN NaN NaN NaN 18.464 1 18.47 17.97 18.97 0.0060463 0 0 0 0.84805 1 9359 9359 9.7643 3.1339 1 73761 2583 49432 50488 85695 85695 0.06347545000608079 VVVGDLVEV 9 Unmodified _VVVGDLVEV_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.5357055664062 1 928.534975 927.527698 0.17994 0.00016708 0.10607 9.8487E-05 0.28601 0.00026557 928.5347903123409 70.27 0.21007 70.27 70.167 70.377 0 14 8 2 0 0 0 0.078417 1 39141 39141 38.151 15.003 1 835790 73762 6989;512 49433 50489 85696 85696 0.06103535837428353 VVVGDLVEV 9 Unmodified _VVVGDLVEV_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;nc|ENSG00000163399|P05023-2|ATP1A1 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;nc|ENSG00000163399|P05023-3|ATP1A1 nc|ENSG00000163399|P05023-3|ATP1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7714233398438 2 464.771126 927.527698 0.41805 0.0001943 -0.28216 -0.00013114 0.13589 6.3159E-05 464.7709983996368 70.265 0.14861 70.265 70.185 70.333 0 8 5 2 0 0 0 0.48152 1 39166 39166 8.5933 1.304 1 837830 73763 6989;512 49433 50489 85697 85697 0.06103535837428353 VVVGVGLIVG 10 Unmodified _VVVGVGLIVG_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.2991638183594 2 456.299853 910.585153 -0.33544 -0.00015306 1.8981 0.00086609 1.5626 0.00071303 456.3003929571113 106.04 0.25644 105.99 105.89 106.15 -0.048103 24 10 3 0 0 0 0.72607 1 58764 58764 0 0 1 11136000 73764 5107 49434 50490 85698 85698 0.12628422833677178 VVVGVGLIVG 10 Unmodified _VVVGVGLIVG_ 0 0 0 ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20221201_MKP_PDAC_01 4 914.6015014648438 1 911.59243 910.585153 1.182 0.0010775 0.13541 0.00012344 1.3174 0.001201 911.5922090199218 105.24 0.32796 99.066 98.841 99.169 -6.1757 198 65 4 0 0 0 0.72607 1 70478 70478 0 0 1 1891499999.9999998 73765 5107 49434 50490 85699 85699 0.12628422833677178 VVVKKRSSK 9 Unmodified _VVVKKRSSK_ 0 0 0 REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF REV__ENST00000565890.1_1_16:89724550-89735902:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 515.8392333984375 2 515.840208 1029.66586 NaN NaN NaN NaN NaN NaN NaN 12.502 1 10.02 9.5204 10.52 -2.482 0 0 0 0.85852 1 6325 6325 0.45834 0 1 + 73766 22214 49435 50491 85700 85700 0.1522170387654569 VVVKRAQRIRR 11 Unmodified _VVVKRAQRIRR_ 0 0 0 ENST00000261693.10_1_12:125267275-125270928:-|nuORF ENST00000261693.10_1_12:125267275-125270928:-|nuORF ENST00000261693.10_1_12:125267275-125270928:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.9546508789062 2 690.954761 1379.89497 NaN NaN NaN NaN NaN NaN NaN 103.83 1 103.78 103.28 104.28 -0.048737 0 0 0 0.9435 1 57657 57657 0 0 1 73767 11248 49436 50492 85701 85701 0.22021715893129112 VVVKTVEALK 10 Unmodified _VVVKTVEALK_ 0 0 0 REV__ENSG00000167325|ENST00000300738|RRM1 REV__ENSG00000167325|ENST00000300738|RRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3497924804688 2 543.350074 1084.6856 NaN NaN NaN NaN NaN NaN NaN 103.85 1 103.8 103.3 104.3 -0.048737 0 0 0 1.0061 1 57668 57668 0 0 1 + 73768 22204 49437 50493 85702 85702 0.14664035096620864 VVVKVFAI 8 Unmodified _VVVKVFAI_ 0 0 0 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 ENSG00000196455|ENST00000356763|PIK3R4 MSMS AL20221201_MKP_PDAC_01 4 437.7910461425781 2 437.791664 873.568775 NaN NaN NaN NaN NaN NaN NaN 11.893 1 9.411 8.911 9.911 -2.482 0 0 0 0.97444 1 5987 5987 0.79363 0 1 73769 9821 49438 50494 85703 85703 0.1269334166754561 VVVLKKRIA 9 Unmodified _VVVLKKRIA_ 0 0 0 REV__ENSG00000143878|ENST00000272233|RHOB REV__ENSG00000143878|ENST00000272233|RHOB MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1025.551025390625 1 1025.71936 1024.71209 0.25427 0.00026081 0.10398 0.00010665 0.35825 0.00036746 1025.7183578214192 46.19 0.25309 45.854 45.686 45.939 -0.33664 17 12 2 0 0 0 0.2191 1 24690 24690 0 0 1 6132000 + 73770 20678 49439 50495 85704 85704 0.2007176877866641 VVVLKNMLLDL 11 Unmodified _VVVLKNMLLDL_ 0 0 0 REV__nc|ENSG00000130270|O60423-3|ATP8B3 REV__nc|ENSG00000130270|O60423-3|ATP8B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 628.885986328125 2 628.885967 1255.75738 NaN NaN NaN NaN NaN NaN NaN 92.291 1 92.291 91.791 92.791 0 0 0 0 0.9435 1 51032 51032 0 0 1 + 73771 19710 49440 50496 85705 85705 0.1397320645887703 VVVLQYNF 8 Unmodified _VVVLQYNF_ 0 0 0 REV__ENST00000374619.1_1_1:23520938-23521079:-|nuORF REV__ENST00000374619.1_1_1:23520938-23521079:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.3390197753906 2 491.273835 980.533118 0.68435 0.0003362 1.9751 0.0009703 2.6594 0.0013065 491.2741354856663 78.893 0.34985 78.948 78.86 79.21 0.05497 22 13 3 0 0 0 8.7369 1 43725 43725 11.114 0.93107 1 1737500 + 73772 26183 49441 50497 85706 85706 0.04207259419899856 VVVLRNKIKP 10 Unmodified _VVVLRNKIKP_ 0 0 0 nc|ENSG00000173809|Q587J7|TDRD12;ENSG00000173809|ENST00000639142|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 nc|ENSG00000173809|Q587J7|TDRD12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.5473022460938 2 583.392608 1164.77066 NaN NaN NaN NaN NaN NaN NaN 105.9 1 105.85 105.35 106.35 -0.048515 0 0 0 1.0024 1 58702 58702 0.40072 0.40072 1 73773 8365 49442 50498 85707 85707 0.19486825353124004 VVVNCNPE 8 Unmodified _VVVNCNPE_ 0 0 0 nc|ENSG00000021826|P31327-2|CPS1;ENSG00000021826|ENST00000233072|CPS1;nc|ENSG00000021826|P31327-3|CPS1 nc|ENSG00000021826|P31327-2|CPS1 nc|ENSG00000021826|P31327-2|CPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.412841796875 1 873.413479 872.406203 0.44426 0.00038802 -1.3781 -0.0012036 -0.93383 -0.00081562 873.4118980684939 59.868 0.22932 59.868 59.754 59.983 0 14 10 2 0 0 0 0.57045 1 33365 33365 28.487 0 1 1110500 73774 530 49443 50499 85708 85708 -0.03510409796740532 VVVNNPRAPL 10 Unmodified _VVVNNPRAPL_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8223876953125 2 539.822015 1077.62948 -0.14935 -8.062E-05 1.7967 0.0009699 1.6474 0.00088928 539.82299967956 51.245 0.21121 50.831 50.718 50.93 -0.41351 23 10 3 0 0 0 0.42068 1 27631 27631 20.454 2.3073 1 3701900 73775 1301 49444 50500 85709 85709 0.09376826979860198 VVVNNPRAPL 10 Unmodified _VVVNNPRAPL_ 0 0 0 ENSG00000080603|ENST00000262518|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;nc|ENSG00000080603|Q6ZRS2-3|SRCAP ENSG00000080603|ENST00000262518|SRCAP ENSG00000080603|ENST00000262518|SRCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8223876953125 2 539.822015 1077.62948 0.43043 0.00023236 0.91893 0.00049606 1.3494 0.00072842 539.8224973581393 50.889 0.39824 50.835 50.669 51.067 -0.053871 25 19 2 0 0 0 0.42068 1 27533 27533 20.454 4.3045 1 3398400 73776 1301 49444 50500 85710 85710 0.09376826979860198 VVVPLIIGQE 10 Unmodified _VVVPLIIGQE_ 0 0 0 nc|ENSG00000120519|Q0GE19-4|SLC10A7 nc|ENSG00000120519|Q0GE19-4|SLC10A7 nc|ENSG00000120519|Q0GE19-4|SLC10A7 MSMS AL20221201_MKP_PDAC_01 4 533.8292236328125 2 533.828975 1065.6434 NaN NaN NaN NaN NaN NaN NaN 109.36 1 103.18 102.68 103.68 -6.1757 0 0 0 1.0004 1 73038 73038 1.4819 0 1 73777 16158 49445 50501 85711 85711 0.11320059688273432 VVVPTAGG 8 Unmodified _VVVPTAGG_ 0 0 0 REV__ENSG00000151474|ENST00000357447|FRMD4A REV__ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.20703125 2 350.205421 698.39629 0.35657 0.00012487 3.0221 0.0010584 3.3787 0.0011832 350.2067119482307 50.757 0.41405 50.757 50.582 50.996 0 41 23 2 0 0 0 0.80975 1 27965 27965 0.79363 0 1 11400000 + 73778 21069 49446 50502 85712 85712 0.035027702601951205 VVVPTAGG 8 Unmodified _VVVPTAGG_ 0 0 0 REV__ENSG00000151474|ENST00000357447|FRMD4A REV__ENSG00000151474|ENST00000357447|FRMD4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 350.205421 698.39629 0.097298 3.4074E-05 4.7095 0.0016493 4.8068 0.0016834 350.2068766406253 51.154 0.21722 50.741 50.619 50.836 -0.41351 0.0089977 0.00035962 NaN 0.79363 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1615400 + 73779 21069 49446 50502 0.035027702601951205 VVVPTAGG 8 Unmodified _VVVPTAGG_ 0 0 0 REV__ENSG00000151474|ENST00000357447|FRMD4A REV__ENSG00000151474|ENST00000357447|FRMD4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 350.205421 698.39629 0.54037 0.00018924 4.0597 0.0014217 4.6001 0.001611 350.20666836059553 50.751 0.37206 50.698 50.49 50.862 -0.053875 -0.034306 -9.5499E-05 NaN 0.79363 47 18 4 NaN NaN NaN NaN 0 NaN NaN 0 16170000 + 73780 21069 49446 50502 0.035027702601951205 VVVQLVQENHL 11 Unmodified _VVVQLVQENHL_ 0 0 0 REV__ENSG00000012174|ENST00000379484|MBTPS2 REV__ENSG00000012174|ENST00000379484|MBTPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.577880859375 3 426.578588 1276.71394 0.06525 2.7834E-05 -0.6742 -0.0002876 -0.60895 -0.00025977 426.578171461445 35.032 0.39214 35.059 34.818 35.211 0.027401 31 17 3 0 0 0 0.73114 1 18458 18458 1.3296 0 1 1638300 + 73781 17064 49447 50503 85713 85713 0.08664733005957714 VVVRKKDEKRK 11 Unmodified _VVVRKKDEKRK_ 0 0 0 REV__nc|ENSG00000118322|O94823-3|ATP10B REV__nc|ENSG00000118322|O94823-3|ATP10B MSMS AL20221201_MKP_PDAC_01 4 692.9417114257812 2 692.940985 1383.86742 NaN NaN NaN NaN NaN NaN NaN 104.62 1 98.442 97.942 98.942 -6.1757 0 0 0 0.94184 1 70049 70049 1.1933 0 1 + 73782 29597 49448 50504 85714 85714 0.19083767842244015 VVVTENPIP 9 Unmodified _VVVTENPIP_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000037665 REV__CON__ENSEMBL:ENSBTAP00000037665 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2772216796875 2 484.276575 966.538597 0.27584 0.00013359 -0.11935 -5.7796E-05 0.1565 7.5789E-05 484.27638535718455 89.328 0.24472 89.328 89.208 89.453 0 14 11 2 0 0 0 0.59218 1 49430 49430 1.8442 0.19162 1 526350 + + 73783 16831 49449 50505 85715 85715 0.05398938211715176 VVVTGPPN 8 Unmodified _VVVTGPPN_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.7239990234375 2 391.723978 781.433404 0.44356 0.00017375 -0.47514 -0.00018613 -0.031583 -1.2372E-05 391.7236733184921 52.709 0.33607 52.257 52.102 52.438 -0.45173 24 16 2 0 0 0 0.50673 1 28454 28454 34.102 3.8776 1 3607000 73784 4198 49450 50506 85716 85716 0.03394441805937731 VVVTGPPN 8 Unmodified _VVVTGPPN_ 0 0 0 ENSG00000130299|ENST00000324894|GTPBP3;nc|ENSG00000130299|Q969Y2-4|GTPBP3;nc|ENSG00000130299|Q969Y2-2|GTPBP3;nc|ENSG00000130299|Q969Y2-3|GTPBP3;ENST00000598038.5_1_19:17448347-17452509:+|nuORF ENSG00000130299|ENST00000324894|GTPBP3 ENSG00000130299|ENST00000324894|GTPBP3 MSMS AL20221201_MKP_PDAC_01 4 391.7247009277344 2 391.723978 781.433404 NaN NaN NaN NaN NaN NaN NaN 59.318 1 53.243 52.743 53.743 -6.0745 0 0 0 0.7268 1 38076 38076 26.884 3.7352 1 73785 4198 49450 50506 85717 85717 0.03394441805937731 VVVVAITAAL 10 Unmodified _VVVVAITAAL_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.3140869140625 2 478.312961 954.611368 1.6395 0.00078422 -0.95687 -0.00045768 0.68268 0.00032653 478.3121594181037 105.23 0.29457 99.054 98.883 99.177 -6.1757 242 64 5 0 0 0 0.72607 2 70377 70377;70520 0 0 1 14231000000 + 73786 21844 49451 50507 85718;85719 85718 0.13224692005110228 VVVVAITAAL 10 Unmodified _VVVVAITAAL_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 955.6196899414062 1 955.618645 954.611368 1.4132 0.0013505 -0.22606 -0.00021603 1.1872 0.0011345 955.6181852932746 105.23 0.32123 99.057 98.816 99.138 -6.1757 170 61 4 0 0 0 0.72607 1 70489 70489 0 0 1 1139100000 + 73787 21844 49451 50507 85720 85720 0.13224692005110228 VVVVGVIAA 9 Unmodified _VVVVGVIAA_ 0 0 0 nc|ENSG00000143217|Q96NY8-2|NECTIN4;ENSG00000143217|ENST00000368012|NECTIN4 nc|ENSG00000143217|Q96NY8-2|NECTIN4 nc|ENSG00000143217|Q96NY8-2|NECTIN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 413.772216796875 2 413.773471 825.53239 NaN NaN NaN NaN NaN NaN NaN 97.374 1 97.131 96.631 97.631 -0.24277 0 0 0 0.8622 1 53171 53171 0 0 1 73788 5479 49452 50508 85721 85721 0.11264464770829363 VVYLTHLDY 9 Unmodified _VVYLTHLDY_ 0 0 0 ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENST00000428210.5_1_2:61705957-61719950:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.566162109375 3 374.865847 1121.57571 1.9379 0.00072644 0.6841 0.00025644 2.622 0.00098288 374.8658106322149 95.698 0.12105 89.523 89.463 89.584 -6.1757 11 7 2 0 0 0 0.21242 1 63406 63406 1.1933 0 1 7167200 73789 13208 49453 50509 85722 85722 0.019786097574751693 VVYYIFLI 8 Unmodified _VVYYIFLI_ 0 0 0 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.3040771484375 2 515.304604 1028.59466 NaN NaN NaN NaN NaN NaN NaN 100.12 1 100.08 99.584 100.58 -0.036301 0 0 0 0.94749 1 55608 55608 11.114 0.29054 1 + 73790 24224 49454 50510 85723 85723 0.08150191119170813 VWAFFAVIF 9 Unmodified _VWAFFAVIF_ 0 0 0 ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D;nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000161509|ENST00000293190|GRIN2C;ENSG00000273079|ENST00000609686|GRIN2B ENSG00000105464|ENST00000263269|GRIN2D MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3035888671875 2 550.302396 1098.59024 0.53015 0.00029174 0.11617 6.3926E-05 0.64631 0.00035567 550.3024166680309 85.686 1.1147 79.51 79.168 80.283 -6.1757 74 40 2 0 0 0 0.22317 1 56475 56475 20.871 2.7362 1 40177000 73791 2325;6792;9151;10892 49455 50511 85724 85724 0.044887266962632566 VWAKILSSF 9 Unmodified _VWAKILSSF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.8028564453125 2 525.80276 1049.59097 0.14946 7.8586E-05 0.20177 0.00010609 0.35123 0.00018468 525.8027919057585 75.871 0.35902 75.918 75.727 76.086 0.047943 52 15 4 0 0 0 0.013041 2 41792 41792;41905 71.922 48.651 1 49388000 73792 1413 49456 50512 85725;85726 85725 0.06815521345333764 VWAKILSSF 9 Unmodified _VWAKILSSF_ 0 0 0 ENSG00000085563|ENST00000622132|ABCB1;nc|ENSG00000085563|P08183-2|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.8032836914062 2 525.80276 1049.59097 1.2125 0.00063754 -0.073815 -3.8812E-05 1.1387 0.00059873 525.8027282381632 96.988 0.36974 90.813 90.622 90.992 -6.1757 82 21 5 0 0 0 0.010611 2 64328 64204;64328 78.728 51.844 1 288650000 73793 1413 49456 50512 85727;85728 85728 0.06815521345333764 VWAPRRRRLRR 11 Unmodified _VWAPRRRRLRR_ 0 0 0 ENST00000376736.5_1_9:79009086-79009278:-|nuORF ENST00000376736.5_1_9:79009086-79009278:-|nuORF ENST00000376736.5_1_9:79009086-79009278:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 761.47607421875 2 761.476726 1520.9389 NaN NaN NaN NaN NaN NaN NaN 24.76 1 24.785 24.285 25.285 0.024429 0 0 0 0.9435 1 12786 12786 0 0 1 73794 12507 49457 50513 85729 85729 0.19926745110137745 VWAVAKKKPP 10 Unmodified _VWAVAKKKPP_ 0 0 0 REV__nc|ENSG00000182013|Q86V59-2|PNMA8A REV__nc|ENSG00000182013|Q86V59-2|PNMA8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.2382507324219 3 375.237726 1122.69135 0.0075551 2.835E-06 1.3406 0.00050306 1.3482 0.0005059 375.23820453502185 33.36 0.29009 33.389 33.253 33.543 0.028931 28 12 3 0 0 0 0.7191 1 17573 17573 0.77653 0.50751 1 6698200 + 73795 23234 49458 50514 85730 85730 0.13491178398976444 VWCMKALEF 9 Carbamidomethyl (C) _VWC(Carbamidomethyl (C))MKALEF_ VWC(1)MKALEF VWC(58)MKALEF 0 1 0 nc|ENSG00000153064|Q8NDB2-4|BANK1;nc|ENSG00000153064|Q8NDB2-3|BANK1;nc|ENSG00000153064|Q8NDB2-2|BANK1;ENSG00000153064|ENST00000322953|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 nc|ENSG00000153064|Q8NDB2-4|BANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2846069335938 2 592.285563 1182.55657 0.15992 9.4721E-05 0.54878 0.00032503 0.7087 0.00041975 592.2859216570703 92.986 0.43155 86.811 86.5 86.932 -6.1757 50 27 3 0 0 0 0.025842 2 61549 61404;61549 57.722 32.323 1 15236000 73796 6233 49459 50515 85731;85732 85732 618 -0.027403861294487797 VWDEAMRRL 9 Unmodified _VWDEAMRRL_ 0 0 0 nc|ENSG00000161618|Q8IZ83-3|ALDH16A1;ENSG00000161618|ENST00000293350|ALDH16A1;ENST00000599652.5_1_19:49965164-49969478:+|nuORF nc|ENSG00000161618|Q8IZ83-3|ALDH16A1 nc|ENSG00000161618|Q8IZ83-3|ALDH16A1 MSMS AL20221201_MKP_PDAC_01 4 392.5385131835938 3 392.537847 1174.59171 NaN NaN NaN NaN NaN NaN NaN 48.718 1 43.321 42.821 43.821 -5.3961 0 0 0 0.20153 1 30373 30373 22.658 9.1394 1 73797 6797 49460 50516 85733 85733 0.011399927227103035 VWDIVGTEL 9 Unmodified _VWDIVGTEL_ 0 0 0 nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 nc|ENSG00000131653|Q6Q0C0-2|TRAF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2739868164062 2 516.274032 1030.53351 0.43103 0.00022253 -0.69115 -0.00035682 -0.26012 -0.00013429 516.2735279264678 84.988 0.31833 84.487 84.276 84.594 -0.5015 20 13 2 0 0 0 0.49272 1 46481 46481 7.9102 2.1497 1 555430 73798 4341 49461 50517 85734 85734 0.01946634349087617 VWDLFPEADKV 11 Unmodified _VWDLFPEADKV_ 0 0 0 nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000569005.5_1_16:28743506-28746001:+|nuORF nc|ENSG00000184110|Q99613-2|EIF3C nc|ENSG00000184110|Q99613-2|EIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.8361206054688 2 659.837528 1317.6605 0.97588 0.00064392 -2.787 -0.001839 -1.8111 -0.001195 659.8359343422414 80.087 0.23508 79.598 79.454 79.689 -0.48932 11 8 2 0 0 0 0.66428 1 43904 43904 7.609 1.4032 1 405780 73799 9221 49462 50518 85735 85735 0.014379355034179753 VWDSQASEHF 10 Unmodified _VWDSQASEHF_ 0 0 0 ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1;nc|ENSG00000177830|Q9BWS9-3|CHID1 ENSG00000177830|ENST00000323578|CHID1 ENSG00000177830|ENST00000323578|CHID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.5130920410156 3 402.512244 1204.5149 0.25742 0.00010362 0.61577 0.00024786 0.8732 0.00035147 402.5124962904704 36.954 0.32055 36.954 36.818 37.138 0 46 15 4 0 0 0 0.66652 1 19603 19603 6.6304 1.2277 1 25330000 73800 8709 49463 50519 85736 85736 -0.07917527292761406 VWDTAGQEKF 10 Unmodified _VWDTAGQEKF_ 0 0 0 ENSG00000132341|ENST00000543796|RAN;ENST00000537745.5_1_12:131357552-131357684:+|nuORF ENSG00000132341|ENST00000543796|RAN ENSG00000132341|ENST00000543796|RAN MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7850341796875 2 590.785296 1179.55604 0.42747 0.00025254 2.8022 0.0016555 3.2297 0.0019081 590.7879049840052 46.179 0.30597 41.224 41.035 41.341 -4.9549 33 20 2 0 0 0 0.040797 2 28476 28463;28476 80.676 48.371 1 15273000 73801 4395 49464 50520 85737;85738 85738 -0.026557662532923132 VWEEMKTTL 9 Oxidation (M) _VWEEM(Oxidation (M))KTTL_ VWEEM(1)KTTL VWEEM(44)KTTL 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7840576171875 2 576.783907 1151.55326 0.73765 0.00042547 0.2505 0.00014448 0.98815 0.00056995 576.7837912846651 36.757 0.26828 36.757 36.61 36.878 0 28 12 3 0 0 0 0.05483 1 19501 19501 43.772 22.026 1 4435300 73802 3108 49465 50521 85739 85739 546 -0.016453577024549304 VWEEMKTTL 9 Oxidation (M) _VWEEM(Oxidation (M))KTTL_ VWEEM(1)KTTL VWEEM(50)KTTL 0 0 1 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.78369140625 2 576.783907 1151.55326 1.3696 0.00078998 0.14896 8.5919E-05 1.5186 0.00087589 576.7835465688785 41.945 0.29259 37.263 37.086 37.379 -4.6825 22 18 2 0 0 0 0.040683 1 25250 25250 49.554 17.249 1 8498700 73803 3108 49465 50521 85740 85740 546 -0.016453577024549304 VWEEMKTTL 9 Unmodified _VWEEMKTTL_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20221201_MKP_PDAC_01 4 568.78515625 2 568.78645 1135.55835 NaN NaN NaN NaN NaN NaN NaN 57.092 1 51.116 50.616 51.616 -5.9769 0 0 0 0.13831 1 36497 36497 38.176 12.776 1 73804 3108 49465 50522 85741 85741 -0.004010538398460994 VWEETIILL 9 Unmodified _VWEETIILL_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.3208618164062 2 558.320983 1114.62741 2.5705 0.0014352 -3.8526 -0.002151 -1.2821 -0.00071583 558.3176060770624 100.05 0.19479 100.01 99.905 100.1 -0.036301 9 6 2 0 0 0 0.2001 1 55574 55574 23.148 2.6948 1 1566000 73805 640 49466 50523 85742 85742 0.0746835345139516 VWFNIGSVDTF 11 Unmodified _VWFNIGSVDTF_ 0 0 0 ENSG00000141385|ENST00000269143|AFG3L2 ENSG00000141385|ENST00000269143|AFG3L2 ENSG00000141385|ENST00000269143|AFG3L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.8163452148438 2 642.816596 1283.61864 0.43689 0.00028084 0.47764 0.00030703 0.91453 0.00058788 642.8170233030457 100.57 0.13309 94.397 94.312 94.445 -6.1757 11 8 2 0 0 0 0.00015283 1 67289 67289 92.491 74.345 1 37767000 73806 5322 49467 50524 85743 85743 -0.01182620185113592 VWFPDMMPTW 10 2 Oxidation (M) _VWFPDM(Oxidation (M))M(Oxidation (M))PTW_ VWFPDM(1)M(1)PTW VWFPDM(78)M(78)PTW 0 0 2 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.2866821289062 2 671.28576 1340.55697 0.83877 0.00056305 0.15643 0.00010501 0.99519 0.00066806 671.2858652727496 90.899 0.65945 84.723 84.505 85.165 -6.1757 58 38 2 0 0 0 0.017277 2 60118 59976;60118 78.149 62.901 1 10636000 73807 316 49468 50525 85744;85745 85745 32;33 -0.09969011200223576 VWFPDMMPTW 10 2 Oxidation (M) _VWFPDM(Oxidation (M))M(Oxidation (M))PTW_ VWFPDM(1)M(1)PTW VWFPDM(52)M(52)PTW 0 0 2 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MSMS AL20221201_MKP_PDAC_01 4 671.2865600585938 2 671.28576 1340.55697 NaN NaN NaN NaN NaN NaN NaN 91.172 1 84.997 84.497 85.497 -6.1757 0 0 0 0.087592 1 60262 60262 52.268 31.854 1 73808 316 49468 50525 85746 85746 32;33 -0.09969011200223576 VWFPDMMPTW 10 Oxidation (M) _VWFPDM(Oxidation (M))MPTW_ VWFPDM(0.5)M(0.5)PTW VWFPDM(0)M(0)PTW 0 0 1 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.2906494140625 2 663.288302 1324.56205 0.79901 0.00052997 0.30259 0.00020071 1.1016 0.00073068 663.2887632830116 100.37 0.20337 94.194 94.088 94.291 -6.1757 32 12 3 0 0 0 0.024981 1 67053 67053 71.134 58.893 2 96635000 73809 316 49468 50526 85747 85747 32;33 -0.08724707337637483 VWFPDMMPTW 10 Unmodified _VWFPDMMPTW_ 0 0 0 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 ENSG00000005812|ENST00000355619|FBXL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.2908325195312 2 655.290845 1308.56714 0.64585 0.00042322 0.10253 6.7185E-05 0.74838 0.0004904 655.291308359029 101.58 0.15258 95.402 95.33 95.483 -6.1757 21 7 4 0 0 0 0.1028 2 68155 68130;68155 46.021 33.78 1 51906000 73810 316 49468 50527 85748;85749 85749 -0.07480403475005915 VWFPGGAF 8 Unmodified _VWFPGGAF_ 0 0 0 nc|ENSG00000159398|Q6NT32-3|CES5A;nc|ENSG00000159398|Q6NT32-2|CES5A;ENSG00000159398|ENST00000290567|CES5A;nc|ENSG00000159398|Q6NT32-4|CES5A;ENST00000543561.1_1_16:67034544-67038818:+|nuORF;nc|ENSG00000172824|Q5XG92-7|CES4A;nc|ENSG00000172824|Q5XG92-6|CES4A;nc|ENSG00000172824|Q5XG92-5|CES4A;nc|ENSG00000172824|Q5XG92-8|CES4A;nc|ENSG00000172824|Q5XG92-2|CES4A;ENSG00000172824|ENST00000648724|CES4A nc|ENSG00000159398|Q6NT32-3|CES5A nc|ENSG00000159398|Q6NT32-3|CES5A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.76220703125 2 440.721239 879.427924 1.0744 0.0004735 -0.017065 -7.521E-06 1.0573 0.00046598 440.72111439740786 57.858 0.1998 57.792 57.634 57.834 -0.066032 14 9 2 0 0 0 8.7369 1 31432 31432 2.8892 0 1 1076500 73811 6652 49469 50528 85750 85750 -0.016612369858535203 VWFRILNV 8 Unmodified _VWFRILNV_ 0 0 0 REV__ENSG00000047936|ENST00000368507|ROS1 REV__ENSG00000047936|ENST00000368507|ROS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.811279296875 2 523.810919 1045.60729 NaN NaN NaN NaN NaN NaN NaN 87.822 1 87.317 86.817 87.817 -0.50423 0 0 0 0.97444 1 48037 48037 0.79363 0 1 + 73812 17236 49470 50529 85751 85751 0.08630647302084071 VWFRIPNQF 9 Unmodified _VWFRIPNQF_ 0 0 0 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 ENSG00000013583|ENST00000014930|HEBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8263549804688 2 603.824558 1205.63456 0.74623 0.00045059 0.3879 0.00023422 1.1341 0.00068482 603.825177071343 95.953 0.29526 89.777 89.63 89.925 -6.1757 49 17 4 0 0 0 0.008678 1 63534 63534 88.904 52.777 1 100250000 73813 480 49471 50530 85752 85752 0.039971308424583185 VWGECNHSF 9 Carbamidomethyl (C) _VWGEC(Carbamidomethyl (C))NHSF_ VWGEC(1)NHSF VWGEC(89)NHSF 0 1 0 ENST00000477012.5_1_3:141461724-141464116:+|nuORF;nc|ENSG00000114125|Q9UBF6-4|RNF7;ENSG00000114125|ENST00000273480|RNF7 ENST00000477012.5_1_3:141461724-141464116:+|nuORF ENST00000477012.5_1_3:141461724-141464116:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.23583984375 2 568.234916 1134.45528 1.1785 0.00066966 1.448 0.0008228 2.6265 0.0014925 568.235617710269 42.74 0.40481 38.055 37.885 38.29 -4.6846 63 25 3 0 0 0 0.0086722 2 25780 25780;25917 88.954 62.686 1 47039000 73814 3020 49472 50531 85753;85754 85753 310 -0.10657121507802003 VWGIQIAVK 9 Unmodified _VWGIQIAVK_ 0 0 0 REV__ENST00000398868.7_1_11:63426327-63426598:-|nuORF REV__ENST00000398868.7_1_11:63426327-63426598:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.3084411621094 2 507.310752 1012.60695 NaN NaN NaN NaN NaN NaN NaN 33.888 1 33.888 33.388 34.388 0 0 0 0 0.41346 1 17809 17809 19.257 2.3147 1 + 73815 26573 49473 50532 85755 85755 0.10115227582230091 VWGLLRVRFL 10 Unmodified _VWGLLRVRFL_ 0 0 0 REV__ENST00000443963.5_1_3:186507222-186507279:+|nuORF REV__ENST00000443963.5_1_3:186507222-186507279:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2640686035156 3 420.264276 1257.771 NaN NaN NaN NaN NaN NaN NaN 91.632 1 91.632 91.132 92.132 0 0 0 0 1.0061 1 50673 50673 0 0 1 + 73816 27117 49474 50533 85756 85756 0.1524224507300005 VWGLLRVRFL 10 Unmodified _VWGLLRVRFL_ 0 0 0 REV__ENST00000443963.5_1_3:186507222-186507279:+|nuORF REV__ENST00000443963.5_1_3:186507222-186507279:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.2639770507812 3 420.264276 1257.771 NaN NaN NaN NaN NaN NaN NaN 92.077 1 92.077 91.577 92.577 0 0 0 0 1.0061 1 50915 50915 0 0 1 + 73817 27117 49474 50533 85757 85757 0.1524224507300005 VWGQAWIA 8 Unmodified _VWGQAWIA_ 0 0 0 REV__ENST00000478465.5_1_9:94122687-94124159:-|nuORF REV__ENST00000478465.5_1_9:94122687-94124159:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5882568359375 1 930.483214 929.475937 0.3039 0.00028277 -0.31019 -0.00028863 -0.0062938 -5.8563E-06 930.4827464862807 97.713 0.7915 97.471 97.099 97.89 -0.24277 92 35 3 0 0 0 0.81107 3 53174 53174;53307;53406 0 0 1 34081000 + 73818 20925 49475 50534 85758;85759;85760 85758 0.008378369341585312 VWGQAWIA 8 Unmodified _VWGQAWIA_ 0 0 0 REV__ENST00000478465.5_1_9:94122687-94124159:-|nuORF REV__ENST00000478465.5_1_9:94122687-94124159:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 930.5882568359375 1 930.483214 929.475937 0.3039 0.00028277 -0.31019 -0.00028863 -0.0062938 -5.8563E-06 930.4827464862807 97.713 0.7915 97.471 97.099 97.89 -0.24277 92 35 3 0 0 0 8.7369 1 53174 53174 0 0 1 34081000 + 73819 20925 49475 50534 85761 85761 0.008378369341585312 VWGSIKGL 8 Unmodified _VWGSIKGL_ 0 0 0 ENSG00000142168|ENST00000270142|SOD1 ENSG00000142168|ENST00000270142|SOD1 ENSG00000142168|ENST00000270142|SOD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.2565002441406 2 430.255446 858.496338 1.6809 0.00072323 1.6082 0.00069195 3.2892 0.0014152 430.25594650324206 104.53 0.060287 98.359 98.338 98.398 -6.1757 6 3 2 0 0 0 0.80992 1 70011 70011 0.69038 0 1 5538600 73820 5394 49476 50535 85762 85762 0.06143007594005212 VWHQRTQAF 9 Unmodified _VWHQRTQAF_ 0 0 0 REV__ENST00000256545.8_1_15:34376462-34376519:-|nuORF REV__ENST00000256545.8_1_15:34376462-34376519:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.30322265625 2 586.801614 1171.58868 0.10217 5.9955E-05 1.0614 0.00062281 1.1635 0.00068277 586.8021612045852 103.49 0.016983 103.49 103.48 103.5 0 10 6 2 0 0 0 0.21798 1 57053 57053 2.3027 0 1 489000 + 73821 24921 49477 50536 85763 85763 0.009744856602310392 VWIDAGTQIFF 11 Unmodified _VWIDAGTQIFF_ 0 0 0 ENSG00000131389|ENST00000622186|SLC6A6;ENST00000485324.1_1_X:152958408-152959565:+|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;nc|ENSG00000130821|P48029-2|SLC6A8 ENSG00000131389|ENST00000622186|SLC6A6;nc|ENSG00000130821|P48029-4|SLC6A8 ENSG00000131389|ENST00000622186|SLC6A6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 648.8731689453125 2 648.834788 1295.65502 1.3815 0.00089636 -1.5044 -0.00097608 -0.12286 -7.9715E-05 648.8350524186159 101.01 0.089531 94.831 94.78 94.869 -6.1757 7 4 2 0 0 0 0.07654 1 67676 67676 53.833 39.927 1 12039000 73822 4321;4268 49478 50537 85764 85764 0.019022567116053324 VWIWFDEY 8 Unmodified _VWIWFDEY_ 0 0 0 REV__ENSG00000188011|ENST00000343216|RTP5 REV__ENSG00000188011|ENST00000343216|RTP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2725219726562 2 579.26875 1156.52295 NaN NaN NaN NaN NaN NaN NaN 90.088 1 89.586 89.086 90.086 -0.50171 0 0 0 0.97444 1 49247 49247 2.5775 0.27475 1 + 73823 23680 49479 50538 85765 85765 -0.04905348305328516 VWKEEPFV 8 Unmodified _VWKEEPFV_ 0 0 0 ENST00000558588.5_1_15:40583969-40599873:-|nuORF;nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2 ENST00000558588.5_1_15:40583969-40599873:-|nuORF ENST00000558588.5_1_15:40583969-40599873:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2708129882812 2 517.271293 1032.52803 NaN NaN NaN NaN NaN NaN NaN 0.30824 1 0.23432 -0.26568 0.73432 -0.07392 0 0 0 0.97444 1 157 157 0.69038 0 1 73824 4980 49480 50539 85766 85766 0.0130695555726561 VWKRLNLV 8 Unmodified _VWKRLNLV_ 0 0 0 nc|ENSG00000006607|O94887-3|FARP2;nc|ENSG00000006607|O94887-2|FARP2;ENSG00000006607|ENST00000264042|FARP2;ENST00000473082.5_1_2:242312627-242344774:+|nuORF;ENST00000478489.5_1_2:242343266-242344701:+|nuORF nc|ENSG00000006607|O94887-3|FARP2 nc|ENSG00000006607|O94887-3|FARP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.3244018554688 2 514.324194 1026.63383 1.489 0.00076583 -0.87566 -0.00045037 0.61335 0.00031546 514.3236636590113 109.59 2.0833 103.42 101.74 103.82 -6.1757 669 412 2 0 0 0 0.80992 2 72427 72427;72642 0.69038 0 1 4939700 73825 340 49481 50540 85767;85768 85767 0.1215833619339719 VWKRPLPVI 9 Unmodified _VWKRPLPVI_ 0 0 0 ENSG00000253598|ENST00000518568|SLC10A5 ENSG00000253598|ENST00000518568|SLC10A5 ENSG00000253598|ENST00000518568|SLC10A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.9071350097656 3 369.906088 1106.69644 1.2961 0.00047944 0.86866 0.00032132 2.1648 0.00080077 369.906376642701 42.245 0.35814 37.56 37.351 37.709 -4.6846 32 22 2 0 0 0 0.60485 1 25477 25477 1.0715 0 1 9075700 73826 10765 49482 50541 85769 85769 0.14735482261608013 VWLEEELKTF 10 Unmodified _VWLEEELKTF_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.3392333984375 2 647.339904 1292.66525 -0.10644 -6.8903E-05 1.605 0.001039 1.4986 0.00097008 647.3406103927698 78.712 0.26493 78.226 78.084 78.349 -0.48596 19 9 3 0 0 0 0.44171 1 43107 43107 19.362 9.9788 1 904420 73827 597 49483 50542 85770 85770 0.03062819646152093 VWLEEELKTF 10 Unmodified _VWLEEELKTF_ 0 0 0 nc|ENSG00000285292|Q9UG63-2|ABCF2;ENSG00000033050|ENST00000287844|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 nc|ENSG00000285292|Q9UG63-2|ABCF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 647.341064453125 2 647.339904 1292.66525 1.1775 0.00076222 2.5477 0.0016492 3.7251 0.0024114 647.3398483378 94.332 0.39929 88.156 87.932 88.332 -6.1757 41 23 3 0 0 0 0.036372 1 62449 62449 64.927 32.141 1 12481000 73828 597 49483 50542 85771 85771 0.03062819646152093 VWLEKRIIM 9 Unmodified _VWLEKRIIM_ 0 0 0 ENST00000519528.1_1_8:103299768-103305927:-|nuORF ENST00000519528.1_1_8:103299768-103305927:-|nuORF ENST00000519528.1_1_8:103299768-103305927:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.2383117675781 3 396.570488 1186.68964 NaN NaN NaN NaN NaN NaN NaN 68.596 1 62.421 61.921 62.921 -6.1757 0 0 0 0.82739 1 44780 44780 2.4985 0.41248 1 73829 14708 49484 50543 85772 85772 0.10375801318718914 VWLHFIREF 9 Unmodified _VWLHFIREF_ 0 0 0 nc|ENSG00000152952|O00469-3|PLOD2;nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 nc|ENSG00000152952|O00469-3|PLOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5639038085938 3 416.229231 1245.66586 0.026726 1.1124E-05 0.83545 0.00034774 0.86218 0.00035886 416.2295088627973 21.837 0.2794 21.851 21.737 22.017 0.013796 17 13 2 0 0 0 0.57331 1 11186 11186 2.9952 0.90923 1 640640 73830 6223 49485 50544 85773 85773 0.05285703876552361 VWLLREQKRKK 11 Unmodified _VWLLREQKRKK_ 0 0 0 ENSG00000196562|ENST00000688720|SULF2;nc|ENSG00000196562|Q8IWU5-2|SULF2 ENSG00000196562|ENST00000688720|SULF2 ENSG00000196562|ENST00000688720|SULF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 742.4635009765625 2 742.464627 1482.9147 0.67739 0.00050294 -2.2542 -0.0016736 -1.5768 -0.0011707 742.46344434314 101.87 0.30986 95.69 95.63 95.939 -6.1757 32 15 3 0 0 0 0.70701 1 68500 68500 3.5965 2.1146 1 10107000 73831 9841 49486 50545 85774 85774 0.19256047113231034 VWLTHGVI 8 Unmodified _VWLTHGVI_ 0 0 0 REV__ENSG00000107611|ENST00000377833|CUBN REV__ENSG00000107611|ENST00000377833|CUBN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.7665100097656 2 462.76872 923.522887 NaN NaN NaN NaN NaN NaN NaN 34.868 1 34.677 34.177 35.177 -0.19131 0 0 0 0.90769 1 18240 18240 18.135 1.1927 1 + 73832 18567 49487 50546 85775 85775 0.05806696485331031 VWMRSPLSTF 10 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ VWM(1)RSPLSTF VWM(76)RSPLSTF 0 0 1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.3133544921875 2 620.313166 1238.61178 1.0084 0.00062551 -1.3525 -0.00083896 -0.3441 -0.00021345 620.3125106016654 58.072 0.75158 58.006 57.675 58.427 -0.066036 134 37 5 0 0 0 0.020109 2 31676 31574;31676 75.571 24.598 1 400650000 73833 89 49488 50547 85776;85777 85777 4 0.0020174366268292943 VWMRSPLSTF 10 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ VWM(1)RSPLSTF VWM(130)RSPLSTF 0 0 1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3143920898438 2 620.313166 1238.61178 1.0464 0.00064908 -0.088249 -5.4742E-05 0.95813 0.00059434 620.3133098820022 63.859 1.3298 57.684 57.292 58.622 -6.1757 263 73 6 0 0 0 9.8271E-06 7 41914 41102;41233;41372;41509;41652;41781;41914 128.57 78.64 1 580520000 73834 89 49488 50547 85778;85779;85780;85781;85782;85783;85784 85784 4 0.0020174366268292943 VWMRSPLSTF 10 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ VWM(1)RSPLSTF VWM(100)RSPLSTF 0 0 1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3143310546875 2 620.313166 1238.61178 0.44614 0.00027675 0.50275 0.00031186 0.94889 0.00058861 620.3134163604788 65.068 0.93711 58.893 58.557 59.494 -6.1757 124 52 3 0 0 0 0.0032515 4 42053 42053;42187;42327;42458 103.82 53.891 1 88568000 73835 89 49488 50547 85785;85786;85787;85788 85785 4 0.0020174366268292943 VWMRSPLSTF 10 Oxidation (M) _VWM(Oxidation (M))RSPLSTF_ VWM(1)RSPLSTF VWM(100)RSPLSTF 0 0 1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.3143920898438 2 620.313166 1238.61178 0.43264 0.00026837 0.079235 4.915E-05 0.51187 0.00031752 620.3133030586825 66.289 0.84024 60.113 59.841 60.681 -6.1757 112 47 3 0 0 0 0.0032515 3 43005 43005;43136;43258 103.82 45.145 1 34460000 73836 89 49488 50547 85789;85790;85791 85789 4 0.0020174366268292943 VWMRSPLSTF 10 Unmodified _VWMRSPLSTF_ 0 0 0 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1;ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 chr15:60364523-60370591|85|60.48|0.76|6.32|-|0|ANXA2,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.317138671875 2 612.315709 1222.61686 1.2126 0.00074252 -0.32419 -0.00019851 0.88844 0.00054401 612.315507487993 88.054 1.5483 81.878 81.036 82.584 -6.1757 188 85 3 0 0 0 0.0032515 7 58394 57645;57769;57890;58011;58140;58261;58394 103.82 70.379 1 725520000 73837 89 49488 50548 85792;85793;85794;85795;85796;85797;85798 85798 0.014460475252917604 VWMTSSSNHL 10 Oxidation (M) _VWM(Oxidation (M))TSSSNHL_ VWM(1)TSSSNHL VWM(89)TSSSNHL 0 0 1 ENST00000474993.5_1_10:103542071-103542269:-|nuORF ENST00000474993.5_1_10:103542071-103542269:-|nuORF ENST00000474993.5_1_10:103542071-103542269:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 589.2692260742188 2 589.268955 1176.52336 NaN NaN NaN NaN NaN NaN NaN 36.132 1 31.939 31.439 32.439 -4.1928 0 0 0 0.028974 1 21063 21063 89.401 49.443 1 73838 13946 49489 50549 85799 85799 1769 -0.05784296647766496 VWNPRSHEKL 10 Unmodified _VWNPRSHEKL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF ENSG00000178252|ENST00000608424|WDR6 ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.5630493164062 3 422.563161 1264.66765 -0.044389 -1.8757E-05 0.27767 0.00011733 0.23328 9.8576E-05 422.5631460637548 23.124 0.090706 23.136 23.095 23.185 0.012396 6 3 2 0 0 0 0.64628 1 11798 11798 11.518 5.7344 1 4610600 73839 8740 49490 50550 85800 85800 0.045907128945145814 VWNPRSHEKL 10 Unmodified _VWNPRSHEKL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF ENSG00000178252|ENST00000608424|WDR6 ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.5634155273438 3 422.563161 1264.66765 0.1495 6.3174E-05 -0.86679 -0.00036627 -0.71729 -0.0003031 422.8968843380231 23.014 0.13274 23.031 22.94 23.072 0.01749 10 6 2 0 0 0 0.16361 1 11834 11834 39.213 22.938 1 7826400 73840 8740 49490 50550 85801 85801 0.045907128945145814 VWNPRSHEKL 10 Unmodified _VWNPRSHEKL_ 0 0 0 ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF ENSG00000178252|ENST00000608424|WDR6 ENSG00000178252|ENST00000608424|WDR6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.5643920898438 3 422.563161 1264.66765 0.26107 0.00011032 0.44154 0.00018658 0.70261 0.0002969 422.5633479412287 25.923 0.36209 22.972 22.788 23.15 -2.9511 60 23 3 0 0 0 0.13297 2 14150 14150;14268 36.395 22.177 1 48410000 73841 8740 49490 50550 85802;85803 85802 0.045907128945145814 VWPAAQFVNF 10 Unmodified _VWPAAQFVNF_ 0 0 0 ENST00000533807.3_1_19:18304624-18306862:+|nuORF;ENSG00000254858|ENST00000599612|MPV17L2;nc|ENSG00000254858|Q567V2-2|MPV17L2 ENST00000533807.3_1_19:18304624-18306862:+|nuORF ENST00000533807.3_1_19:18304624-18306862:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 589.8040161132812 2 589.803291 1177.59203 NaN NaN NaN NaN NaN NaN NaN 99.803 1 93.628 93.128 94.128 -6.1757 0 0 0 0.098035 1 66580 66580 61.357 39.611 1 73842 10782 49491 50551 85804 85804 0.010337357142361725 VWPAKPFHF 9 Unmodified _VWPAKPFHF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8700866699219 3 376.871155 1127.59164 0.76679 0.00028898 -1.2457 -0.00046946 -0.47888 -0.00018048 376.87060081783 57.615 0.2977 57.549 57.458 57.755 -0.066036 38 14 3 0 0 0 0.12841 1 31387 31387 21.537 14.435 1 3858100 73843 3756 49492 50552 85805 85805 0.03294360785025674 VWPAKPFHF 9 Unmodified _VWPAKPFHF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MSMS AL20221201_MKP_PDAC_01 4 376.8717041015625 3 376.871155 1127.59164 NaN NaN NaN NaN NaN NaN NaN 81.724 1 75.549 75.049 76.049 -6.1757 0 0 0 0.46757 1 53657 53657 11.495 5.7629 1 73844 3756 49492 50552 85806 85806 0.03294360785025674 VWPAKPFHF 9 Unmodified _VWPAKPFHF_ 0 0 0 nc|ENSG00000124181|P19174|PLCG1;ENSG00000124181|ENST00000685551|PLCG1;ENST00000608689.5_2_20:39801092-39811607:+|nuORF nc|ENSG00000124181|P19174|PLCG1 nc|ENSG00000124181|P19174|PLCG1 MSMS AL20221201_MKP_PDAC_01 4 376.8714294433594 3 376.871155 1127.59164 NaN NaN NaN NaN NaN NaN NaN 81.922 1 75.746 75.246 76.246 -6.1757 0 0 0 0.20498 1 53795 53795 21.537 14.435 1 73845 3756 49492 50552 85807 85807 0.03294360785025674 VWPHSDFC 8 Unmodified _VWPHSDFC_ 0 0 0 ENST00000283632.4_1_2:87002151-87002271:+|nuORF ENST00000283632.4_1_2:87002151-87002271:+|nuORF ENST00000283632.4_1_2:87002151-87002271:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 495.7087097167969 2 495.710545 989.406537 NaN NaN NaN NaN NaN NaN NaN 13.652 1 11.171 10.671 11.671 -2.482 0 0 0 0.97444 1 6918 6918 0.79363 0.10326 1 73846 11427 49493 50553 85808 85808 -0.0885899007688522 VWPKKGTAVFW 11 Unmodified _VWPKKGTAVFW_ 0 0 0 nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1;ENST00000464310.2_1_10:74769532-74774020:-|nuORF nc|ENSG00000122884|P13674-3|P4HA1 nc|ENSG00000122884|P13674-3|P4HA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2481689453125 3 440.248403 1317.72338 1.037 0.00045654 -0.29632 -0.00013045 0.74069 0.00032609 440.24821283044696 57.422 0.57458 57.356 57.201 57.775 -0.066032 41 28 2 0 0 0 0.71259 2 31270 31270;31403 3.0723 0.98626 1 1835900 73847 3668 49494 50554 85809;85810 85809 0.07722546082118242 VWPRWERWRWP 11 Unmodified _VWPRWERWRWP_ 0 0 0 REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF REV__ENST00000589087.5_1_19:2806818-2807876:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.4307861328125 2 827.431119 1652.84768 NaN NaN NaN NaN NaN NaN NaN 77.81 1 77.327 76.827 77.827 -0.4826 0 0 0 0.9435 1 42600 42600 0 0 1 + 73848 29133 49495 50555 85811 85811 0.04737436622144742 VWQGFQWIQ 9 Unmodified _VWQGFQWIQ_ 0 0 0 REV__ENSG00000137225|ENST00000398776|CAPN11 REV__ENSG00000137225|ENST00000398776|CAPN11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.8697509765625 3 397.869703 1190.58728 0.98993 0.00039386 -0.4583 -0.00018234 0.53163 0.00021152 398.2037707897172 34.655 0.26148 30.56 30.438 30.7 -4.0951 27 15 2 0 0 0 0.49272 1 20061 20061 4.897 1.3043 1 8848200 + 73849 20225 49496 50556 85812 85812 -0.00039148428550106473 VWQIGFIEL 9 Unmodified _VWQIGFIEL_ 0 0 0 REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8740844726562 3 368.874454 1103.60153 0.47007 0.0001734 -0.39912 -0.00014723 0.070947 2.6171E-05 368.8742296631676 46.466 0.27465 46.466 46.332 46.607 0 27 12 3 0 0 0 0.43463 1 25408 25408 7.1017 0.47135 1 2233600 + 73850 20821 49497 50557 85813 85813 0.05387503999759247 VWQIGFIEL 9 Unmodified _VWQIGFIEL_ 0 0 0 REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 368.874454 1103.60153 0.47007 0.0001734 -0.39912 -0.00014723 0.070947 2.6171E-05 368.8742296631676 46.466 0.27465 46.466 46.332 46.607 0 0 0 NaN 7.1017 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2233600 + 73851 20821 49497 50557 0.05387503999759247 VWRGDQFVF 9 Unmodified _VWRGDQFVF_ 0 0 0 REV__nc|ENSG00000174015|Q8NA61-2|CBY2 REV__nc|ENSG00000174015|Q8NA61-2|CBY2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2941284179688 2 577.293091 1152.57163 NaN NaN NaN NaN NaN NaN NaN 78.315 1 78.367 77.867 78.867 0.052452 0 0 0 0.6557 1 43247 43247 10.824 0 1 + 73852 22765 49498 50558 85814 85814 0.0014456505441557965 VWRHFQAYLW 10 Unmodified _VWRHFQAYLW_ 0 0 0 ENST00000462616.1_1_9:139311477-139313651:+|nuORF ENST00000462616.1_1_9:139311477-139313651:+|nuORF ENST00000462616.1_1_9:139311477-139313651:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 703.362060546875 2 703.361839 1404.70913 -0.55779 -0.00039233 0.85816 0.00060359 0.30037 0.00021127 703.3620476554484 25.732 0.14445 25.732 25.634 25.779 0 10 6 2 0 0 0 0.70951 1 13194 13194 1.8442 0.51471 1 843820 73853 13682 49499 50559 85815 85815 0.022958936538316266 VWRIRQLLRR 10 Unmodified _VWRIRQLLRR_ 0 0 0 ENSG00000167612|ENST00000301190|ANKRD33;nc|ENSG00000167612|Q7Z3H0-1|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 ENSG00000167612|ENST00000301190|ANKRD33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.44482421875 2 698.444029 1394.87351 1.1522 0.00080475 -0.12322 -8.6061E-05 1.029 0.00071869 698.945509695719 104.25 0.10817 98.071 98.014 98.122 -6.1757 13 5 3 0 0 0 0.72607 1 69823 69823 0 0 1 39236000 73854 7637 49500 50560 85816 85816 0.1918633086443151 VWRQGKGDF 9 Unmodified _VWRQGKGDF_ 0 0 0 nc|ENSG00000149926|Q71RH2-2|TLCD3B;ENSG00000149926|ENST00000380495|TLCD3B nc|ENSG00000149926|Q71RH2-2|TLCD3B nc|ENSG00000149926|Q71RH2-2|TLCD3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.78369140625 2 546.78289 1091.55123 0.32603 0.00017827 1.4194 0.00077611 1.7454 0.00095437 546.7836684085079 49.092 0.2681 49.048 48.927 49.195 -0.04369 23 12 3 0 0 0 0.16226 1 26504 26504 26.884 2.2098 1 2137600 73855 6043 49501 50561 85817 85817 0.009113943946204017 VWSLERRL 8 Unmodified _VWSLERRL_ 0 0 0 ENST00000483807.5_1_9:139887454-139888254:+|nuORF;ENSG00000148362|ENST00000371620|PAXX ENST00000483807.5_1_9:139887454-139888254:+|nuORF ENST00000483807.5_1_9:139887454-139888254:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.797119140625 2 529.808908 1057.60326 0.258 0.00013669 -0.93216 -0.00049386 -0.67415 -0.00035717 529.8082281440567 93.41 0.91599 87.234 86.964 87.88 -6.1757 178 60 4 0 0 0 0.65867 1 62103 62103 20.871 2.7249 1 477970000 73856 5927 49502 50562 85818 85818 0.07676557808372309 VWSQEMKRAS 10 Unmodified _VWSQEMKRAS_ 0 0 0 ENST00000508406.1_1_4:85214410-85214560:-|nuORF ENST00000508406.1_1_4:85214410-85214560:-|nuORF ENST00000508406.1_1_4:85214410-85214560:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 610.900146484375 2 611.305872 1220.59719 NaN NaN NaN NaN NaN NaN NaN 103.43 1 97.257 96.757 97.757 -6.1757 0 0 0 0.97302 1 69348 69348 3.5965 0.31518 1 73857 14558 49503 50563 85819 85819 -0.00428328485440943 VWTDKSSLF 9 Unmodified _VWTDKSSLF_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7808227539062 2 541.779482 1081.54441 1.7883 0.00096885 1.4284 0.00077388 3.2167 0.0017427 541.7803271770695 62.54 0.45122 56.365 56.156 56.608 -6.1757 52 22 3 0 0 0 0.0074135 2 40316 40316;40448 110.67 51.996 1 31601000 73858 1191 49504 50564 85820;85821 85820 0.0069003672338112665 VWTSVAVVW 9 Unmodified _VWTSVAVVW_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000522325.1_1_8:62593500-62596676:-|nuORF;ENST00000522036.1_1_8:62596574-62602247:-|nuORF;ENST00000517928.1_1_8:62574468-62597059:-|nuORF;nc|ENSG00000198363|Q12797-7|ASPH;nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH;nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-11|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 1046.567016601562 1 1046.56694 1045.55967 0.67945 0.00071109 -0.26036 -0.00027249 0.41908 0.0004386 1046.567067114244 99.502 0.15526 93.326 93.261 93.416 -6.1757 16 9 2 0 0 0 0.0090851 1 66286 66286 85.357 39.336 1 41148000 73859 10082 49505 50565 85822 85822 0.038709483112370435 VWTSVAVVW 9 Unmodified _VWTSVAVVW_ 0 0 0 nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH;ENST00000522325.1_1_8:62593500-62596676:-|nuORF;ENST00000522036.1_1_8:62596574-62602247:-|nuORF;ENST00000517928.1_1_8:62574468-62597059:-|nuORF;nc|ENSG00000198363|Q12797-7|ASPH;nc|ENSG00000198363|Q12797-4|ASPH;nc|ENSG00000198363|Q12797-3|ASPH;nc|ENSG00000198363|Q12797-9|ASPH;nc|ENSG00000198363|Q12797-6|ASPH;nc|ENSG00000198363|Q12797-11|ASPH;nc|ENSG00000198363|Q12797-5|ASPH;nc|ENSG00000198363|Q12797-8|ASPH;nc|ENSG00000198363|Q12797-2|ASPH nc|ENSG00000198363|Q12797-10|ASPH nc|ENSG00000198363|Q12797-10|ASPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7881469726562 2 523.78711 1045.55967 0.9423 0.00049357 1.0818 0.00056664 2.0241 0.0010602 523.7873589312726 99.519 0.27283 93.343 93.201 93.474 -6.1757 27 17 2 0 0 0 0.12841 1 66324 66324 30.225 10.786 1 75093000 73860 10082 49505 50565 85823 85823 0.038709483112370435 VWTTVVTQ 8 Unmodified _VWTTVVTQ_ 0 0 0 REV__ENSG00000183134|ENST00000332539|PTGDR2 REV__ENSG00000183134|ENST00000332539|PTGDR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 936.5111083984375 1 933.504009 932.496732 0.054316 5.0704E-05 0.056853 5.3072E-05 0.11117 0.00010378 933.5039573100152 52.14 0.40585 52.14 51.996 52.402 0 52 17 4 0 0 0 0.80143 1 28902 28902 5.7604 0 1 28733000 + 73861 23324 49506 50566 85824 85824 0.027783825231949777 VWVNLVKDKDP 11 Unmodified _VWVNLVKDKDP_ 0 0 0 ENST00000354386.10_1_14:58958922-58965549:+|nuORF ENST00000354386.10_1_14:58958922-58965549:+|nuORF ENST00000354386.10_1_14:58958922-58965549:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 438.741943359375 3 438.246839 1311.71869 0.87369 0.00038289 0.42334 0.00018553 1.297 0.00056842 438.2471949564172 18.56 0.34195 15.939 15.755 16.097 -2.6215 113 36 4 0 0 0 0.3021 1 9676 9676 4.1166 0.52395 1 15817000 73862 12065 49507 50567 85825 85825 0.07529617148702528 VWVPFIYSF 9 Unmodified _VWVPFIYSF_ 0 0 0 ENSG00000143815|ENST00000272163|LBR;LBR|p.T525Pfs*11|1|0.06|ENSG00000143815|chr1:225404518-225404518|T/-|frameshift_variant;ENST00000424022.2_1_1:225594357-225599062:-|nuORF ENSG00000143815|ENST00000272163|LBR ENSG00000143815|ENST00000272163|LBR MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3049926757812 2 579.305136 1156.59572 0.82327 0.00047693 -0.26587 -0.00015402 0.55741 0.00032291 579.304787989376 102.06 0.10689 95.889 95.833 95.939 -6.1757 13 4 4 0 0 0 0.040472 1 68508 68508 49.669 30.23 1 27533000 73863 5556 49508 50568 85826 85826 0.023684054880959593 VWVVILGGLLI 11 Unmodified _VWVVILGGLLI_ 0 0 0 REV__ENSG00000164073|ENST00000641686|MFSD8 REV__ENSG00000164073|ENST00000641686|MFSD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3865966796875 2 591.38646 1180.75837 NaN NaN NaN NaN NaN NaN NaN 13.784 1 13.791 13.291 14.291 0.0073986 0 0 0 0.9435 1 6806 6806 0 0 1 + 73864 21860 49509 50569 85827 85827 0.1752178889012157 VWWTVRTF 8 Unmodified _VWWTVRTF_ 0 0 0 ENST00000573872.5_1_16:3721765-3727644:-|nuORF ENST00000573872.5_1_16:3721765-3727644:-|nuORF ENST00000573872.5_1_16:3721765-3727644:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7942504882812 2 547.792727 1093.5709 0.301 0.00016488 -0.31348 -0.00017172 -0.012485 -6.8391E-06 547.7926871328318 94.668 0.29154 94.248 94.129 94.42 -0.42044 25 14 2 0 0 0 0.80676 1 51680 51680 2.5775 0 1 511700 73865 15503 49510 50570 85828 85828 0.02785770405353105 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.238037109375 3 396.237615 1185.69102 0.20739 8.2177E-05 0.79297 0.0003142 1.0004 0.00039638 396.2378940710316 49.125 0.38828 49.081 48.887 49.275 -0.04369 71 18 5 0 0 0 0.36277 2 26571 26475;26571 23.801 18.504 1 67757000 73866 3395 49511 50571 85829;85830 85830 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.8536987304688 2 593.852784 1185.69102 0.20782 0.00012341 0.83738 0.00049728 1.0452 0.00062069 593.8532818626619 49.125 0.28808 49.082 48.927 49.215 -0.04369 30 13 3 0 0 0 0.34435 1 26513 26513 29.082 19.698 1 4237000 73867 3395 49511 50571 85831 85831 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.23828125 3 396.237615 1185.69102 1.4053 0.00055683 0.18203 7.2129E-05 1.5873 0.00062896 396.23767699450553 54.271 0.53804 48.406 48.118 48.656 -5.8653 97 31 4 0 0 0 0.43662 3 34519 34243;34379;34519 19.626 11.885 1 143990000 73868 3395 49511 50571 85832;85833;85834 85834 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8536987304688 2 593.852784 1185.69102 0.96142 0.00057094 0.13775 8.1803E-05 1.0992 0.00065274 593.8527574894462 54.282 0.32506 48.417 48.247 48.572 -5.8653 44 19 3 0 0 0 0.2667 2 34326 34326;34473 34.402 25.019 1 33718000 73869 3395 49511 50571 85835;85836 85835 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.2378234863281 3 396.237615 1185.69102 0.80897 0.00032055 -0.013871 -5.4963E-06 0.7951 0.00031505 396.2375958255244 68.191 1.1843 62.015 61.217 62.402 -6.1757 92 69 2 0 0 0 0.2667 6 43915 43915;44046;44194;44360;44499;44640 29.437 25.561 1 37191000 73870 3395 49511 50571 85837;85838;85839;85840;85841;85842 85837 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MSMS AL20221201_MKP_PDAC_01 4 396.2372436523438 3 396.237615 1185.69102 NaN NaN NaN NaN NaN NaN NaN 67.007 1 60.831 60.331 61.331 -6.1757 0 0 0 0.63617 1 43621 43621 19.626 12.589 1 73871 3395 49511 50571 85843 85843 0.10559758679096376 VWYPGKPLKV 10 Unmodified _VWYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MSMS AL20221201_MKP_PDAC_01 4 396.2378845214844 3 396.237615 1185.69102 NaN NaN NaN NaN NaN NaN NaN 67.234 1 61.058 60.558 61.558 -6.1757 0 0 0 0.73897 1 43787 43787 14.957 7.8554 1 73872 3395 49511 50571 85844 85844 0.10559758679096376 VWYYPLQWWKY 11 Unmodified _VWYYPLQWWKY_ 0 0 0 REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF REV__ENST00000587908.1_1_19:56832840-56833431:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 816.40380859375 2 816.405912 1630.79727 NaN NaN NaN NaN NaN NaN NaN 100.2 1 94.028 93.528 94.528 -6.1757 0 0 0 0.94301 1 66945 66945 0.35063 0 1 + 73873 18954 49512 50572 85845 85845 0.00710469453792939 VYAAKVENKW 10 Unmodified _VYAAKVENKW_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.2212829589844 3 403.220513 1206.63971 0.68653 0.00027682 1.0261 0.00041374 1.7126 0.00069056 403.22074281433925 30.013 0.1596 29.932 29.815 29.975 -0.080429 8 5 2 0 0 0 0.69848 1 15574 15574 3.0723 1.8789 1 1733400 73874 9762 49513 50573 85846 85846 0.04465389914412299 VYAALQRQLL 10 Unmodified _VYAALQRQLL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8501586914062 2 587.850773 1173.68699 -0.93896 -0.00055197 0.62564 0.00036778 -0.31332 -0.00018418 587.8509038052154 56.427 0.15522 55.941 55.805 55.96 -0.48554 12 7 2 0 0 0 0.0086576 1 30619 30619 120.45 95.777 1 5322900 73875 16412 49514 50574 85847 85847 0.10709669185393977 VYAALQRQLL 10 Unmodified _VYAALQRQLL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.8507690429688 2 587.850773 1173.68699 -0.34762 -0.00020435 0.18206 0.00010702 -0.16556 -9.7326E-05 587.8508384713169 56.078 0.40941 56.009 55.821 56.23 -0.068741 75 21 5 0 0 0 0.0044938 2 30536 30425;30536 120.45 95.777 1 262430000 73876 16412 49514 50574 85848;85849 85849 0.10709669185393977 VYAALQRQLL 10 Unmodified _VYAALQRQLL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8511962890625 2 587.850773 1173.68699 0.78477 0.00046133 -0.13463 -7.9141E-05 0.65014 0.00038218 587.8506686425036 61.804 0.59972 55.629 55.367 55.966 -6.1757 109 32 5 0 0 0 0.0022709 3 40002 39750;39870;40002 141.83 95.777 1 698470000 73877 16412 49514 50574 85850;85851;85852 85852 0.10709669185393977 VYAALQRQLL 10 Unmodified _VYAALQRQLL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.8510131835938 2 587.850773 1173.68699 1.3244 0.00077858 -0.27157 -0.00015964 1.0529 0.00061894 587.8506614581801 62.385 0.83015 56.209 55.95 56.78 -6.1757 110 43 3 0 0 0 0.0086576 4 40274 40134;40274;40412;40587 120.45 88.333 1 56576000 73878 16412 49514 50574 85853;85854;85855;85856 85854 0.10709669185393977 VYAAQPHVI 9 Unmodified _VYAAQPHVI_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2769165039062 2 499.276909 996.539266 0.52659 0.00026292 -0.55387 -0.00027653 -0.027275 -1.3618E-05 499.2767891556796 37.008 0.2812 37.008 36.878 37.159 0 25 13 3 0 0 0 0.06187 1 19685 19685 42.095 28.587 1 3706700 73879 768 49515 50575 85857 85857 0.04085777651414446 VYAAQPHVI 9 Unmodified _VYAAQPHVI_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2786254882812 2 499.276909 996.539266 -0.34614 -0.00017282 3.0206 0.0015081 2.6744 0.0013353 499.2783231133953 37.266 0.19549 36.995 36.897 37.092 -0.27133 13 7 2 0 0 0 0.14602 1 19594 19594 28.487 14.979 1 1285600 73880 768 49515 50575 85858 85858 0.04085777651414446 VYAAQPHVI 9 Unmodified _VYAAQPHVI_ 0 0 0 nc|ENSG00000054965|Q92567|FAM168A;ENSG00000054965|ENST00000356467|FAM168A nc|ENSG00000054965|Q92567|FAM168A nc|ENSG00000054965|Q92567|FAM168A MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2767028808594 2 499.276909 996.539266 1.0946 0.00054649 -0.35689 -0.00017819 0.73767 0.0003683 499.2765908187997 41.996 0.38325 37.311 37.125 37.508 -4.6846 34 23 2 0 0 0 0.095405 1 25379 25379 34.102 17.016 1 10270000 73881 768 49515 50575 85859 85859 0.04085777651414446 VYADGIFDLF 10 Unmodified _VYADGIFDLF_ 0 0 0 ENST00000491544.1_1_3:195974480-195997402:-|nuORF;ENST00000473978.5_1_3:195974976-195997402:-|nuORF;nc|ENSG00000102230|Q9Y5K3-2|PCYT1B;nc|ENSG00000102230|Q9Y5K3-4|PCYT1B;nc|ENSG00000102230|Q9Y5K3-3|PCYT1B;ENSG00000161217|ENST00000431016|PCYT1A;ENSG00000102230|ENST00000379144|PCYT1B ENST00000491544.1_1_3:195974480-195997402:-|nuORF ENST00000491544.1_1_3:195974480-195997402:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2872314453125 2 580.28714 1158.55973 0.66109 0.00038362 -1.241 -0.00072012 -0.57989 -0.0003365 580.2859930635207 101.76 0.12651 95.587 95.503 95.63 -6.1757 21 9 3 0 0 0 0.1028 1 68300 68300 46.021 19.137 1 101630000 73882 2030 49516 50576 85860 85860 -0.013210964794552638 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2596435546875 2 524.8055 1047.59645 0.54346 0.00028521 0.20794 0.00010913 0.7514 0.00039434 524.805842542442 61.393 0.22176 61.393 61.254 61.476 0 16 9 2 0 0 0 0.19891 1 34215 34215 11.64 1.4569 1 986720 73883 4967 49517 50577 85861 85861 0.07455200137110296 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.8056640625 2 524.8055 1047.59645 0.20232 0.00010618 0.22262 0.00011683 0.42493 0.00022301 524.8055777240098 61.811 0.2868 61.323 61.182 61.469 -0.48764 41 13 4 0 0 0 0.0090524 1 33665 33665 85.642 10.713 1 11706000 73884 4967 49517 50577 85862 85862 0.07455200137110296 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8056030273438 2 524.8055 1047.59645 0.82963 0.0004354 -1.2179 -0.00063916 -0.38827 -0.00020377 524.8058554298898 67.333 0.59183 61.157 60.826 61.418 -6.1757 77 33 3 0 0 0 0.044296 1 43832 43832 47.594 7.6447 1 36370000 73885 4967 49517 50577 85863 85863 0.07455200137110296 VYADKLLNI 9 Unmodified _VYADKLLNI_ 0 0 0 ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF ENSG00000137770|ENST00000260327|CTDSPL2 ENSG00000137770|ENST00000260327|CTDSPL2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.8055 1047.59645 0.23681 0.00012428 0.40075 0.00021032 0.63756 0.00033459 524.8050215202339 61.368 0.18458 61.33 61.266 61.451 -0.037811 0.029314 0.00050341 NaN 85.642 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1893200 73886 4967 49517 50577 0.07455200137110296 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2719116210938 2 545.271824 1088.5291 0.55119 0.00030055 -0.50025 -0.00027277 0.05094 2.7776E-05 545.2715404152898 49.339 0.60153 49.339 49.004 49.606 0 75 27 5 0 0 0 0.12424 1 27161 27161 30.637 15.798 1 142920000 73887 1828 49518 50578 85864 85864 -0.011628300738266262 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2723388671875 2 545.271824 1088.5291 0.59134 0.00032244 0.10961 5.9768E-05 0.70095 0.00038221 545.2719372082075 49.698 0.58882 49.305 48.943 49.532 -0.3923 87 29 5 0 0 0 0.07916 2 26791 26689;26791 37.974 23.136 1 90210000 73888 1828 49518 50578 85865;85866 85866 -0.011628300738266262 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2716064453125 2 545.271824 1088.5291 0.60926 0.00033221 -0.17121 -9.3358E-05 0.43805 0.00023885 545.2717691962172 49.37 0.34216 49.326 49.134 49.476 -0.04369 31 16 2 0 0 0 0.1773 2 26632 26632;26733 25.399 16.052 1 5508800 73889 1828 49518 50578 85867;85868 85867 -0.011628300738266262 VYADQPHIF 9 Unmodified _VYADQPHIF_ 0 0 0 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 ENSG00000100439|ENST00000428304|ABHD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.272216796875 2 545.271824 1088.5291 1.0478 0.00057133 -0.31389 -0.00017116 0.7339 0.00040017 545.2716426791678 55.24 0.71833 49.319 49.003 49.721 -5.9211 129 44 4 0 0 0 0.031062 3 35146 35014;35146;35280 54.774 34.32 1 574560000 73890 1828 49518 50578 85869;85870;85871 85870 -0.011628300738266262 VYADTIKDLL 10 Unmodified _VYADTIKDLL_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.8211059570312 2 575.821347 1149.62814 0.46067 0.00026527 -0.25015 -0.00014404 0.21052 0.00012122 575.8209129517321 69.262 0.29323 69.262 69.084 69.377 0 31 12 3 0 0 0 0.24511 1 38568 38568 30.703 17.661 1 2898800 73891 6852 49519 50579 85872 85872 0.05931148100421524 VYADTIKDLL 10 Unmodified _VYADTIKDLL_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8222045898438 2 575.821347 1149.62814 0.007744 4.4591E-06 1.1231 0.00064671 1.1308 0.00065117 575.8218458569567 69.695 0.50725 69.216 68.874 69.382 -0.47903 60 21 4 0 0 0 0.11654 1 38091 38091 43.982 19.961 1 9593000 73892 6852 49519 50579 85873 85873 0.05931148100421524 VYADTIKDLL 10 Unmodified _VYADTIKDLL_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.82275390625 2 575.821347 1149.62814 NaN NaN NaN NaN NaN NaN NaN 80.64 1 74.464 73.964 74.964 -6.1757 0 0 0 0.41085 1 52911 52911 30.703 3.8198 1 73893 6852 49519 50579 85874 85874 0.05931148100421524 VYADTIKDLL 10 Unmodified _VYADTIKDLL_ 0 0 0 ENST00000498228.1_1_1:55014277-55063089:+|nuORF;ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11 ENST00000498228.1_1_1:55014277-55063089:+|nuORF ENST00000498228.1_1_1:55014277-55063089:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 575.43359375 2 575.821347 1149.62814 NaN NaN NaN NaN NaN NaN NaN 81.092 1 74.917 74.417 75.417 -6.1757 0 0 0 0.55063 1 53214 53214 23.79 2.9186 1 73894 6852 49519 50579 85875 85875 0.05931148100421524 VYADYHTHF 9 Unmodified _VYADYHTHF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000590301.1_1_18:21131585-21134870:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8419799804688 3 384.841813 1151.50361 -0.92251 -0.00035502 -0.41572 -0.00015999 -1.3382 -0.00051501 384.8423261002137 32.124 0.2012 32.124 32.002 32.204 0 15 9 3 0 0 0 0.078314 1 16769 16769 38.176 31.074 1 3470700 73895 5337 49520 50580 85876 85876 -0.06608304596261405 VYADYHTHF 9 Unmodified _VYADYHTHF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000590301.1_1_18:21131585-21134870:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.8423461914062 3 384.841813 1151.50361 -0.02016 -7.7585E-06 -0.057239 -2.2028E-05 -0.077399 -2.9786E-05 384.84202502941287 32.099 0.22674 31.97 31.842 32.069 -0.12915 21 8 3 0 0 0 0.078314 1 16698 16698 38.176 31.984 1 3090000 73896 5337 49520 50580 85877 85877 -0.06608304596261405 VYADYHTHF 9 Unmodified _VYADYHTHF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000590301.1_1_18:21131585-21134870:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8428039550781 3 384.841813 1151.50361 1.3537 0.00052096 -0.39265 -0.00015111 0.96105 0.00036985 384.84212313380243 36.108 0.36308 31.916 31.755 32.118 -4.1928 48 21 3 0 0 0 0.032796 1 21082 21082 53.833 45.887 1 17288000 73897 5337 49520 50580 85878 85878 -0.06608304596261405 VYADYHTHF 9 Unmodified _VYADYHTHF_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000590301.1_1_18:21131585-21134870:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.760009765625 2 576.759081 1151.50361 1.0234 0.00059028 0.053095 3.0623E-05 1.0765 0.00062091 576.7590724180578 36.195 0.27972 32.002 31.787 32.067 -4.1928 25 16 2 0 0 0 0.047788 1 21087 21087 42.095 25.152 1 5207800 73898 5337 49520 50580 85879 85879 -0.06608304596261405 VYADYHTHFL 10 Unmodified _VYADYHTHFL_ 0 0 0 ENST00000540608.5_1_18:21119776-21166285:-|nuORF;ENSG00000141458|ENST00000269228|NPC1;nc|ENSG00000141458|O15118-2|NPC1;ENST00000590301.1_1_18:21131585-21134870:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF ENST00000540608.5_1_18:21119776-21166285:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 422.5372009277344 3 422.536501 1264.58767 NaN NaN NaN NaN NaN NaN NaN 50.49 1 44.951 44.451 45.451 -5.5391 0 0 0 0.59582 1 31683 31683 21.59 3.2171 1 73899 5337 49521 50581 85880 85880 -0.03403773499348972 VYAESVDVL 9 Unmodified _VYAESVDVL_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1;ENST00000569626.1_1_16:67168183-67168375:+|nuORF;ENST00000569683.5_1_16:67144033-67168649:+|nuORF ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7584533691406 2 497.758215 993.501877 0.43772 0.00021788 -0.013027 -6.4843E-06 0.42469 0.00021139 497.75820277228513 58.177 0.52145 58.177 57.794 58.316 0 44 20 3 0 0 0 0.078417 1 32384 32384 38.151 17.28 1 2837000 73900 3831 49522 50582 85881 85881 0.004866415951369163 VYAESVDVL 9 Unmodified _VYAESVDVL_ 0 0 0 ENSG00000125149|ENST00000219139|PHAF1;ENST00000569626.1_1_16:67168183-67168375:+|nuORF;ENST00000569683.5_1_16:67144033-67168649:+|nuORF ENSG00000125149|ENST00000219139|PHAF1 ENSG00000125149|ENST00000219139|PHAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.509521484375 1 994.509154 993.501877 0.1249 0.00012421 -0.37841 -0.00037633 -0.25351 -0.00025212 994.5088687088094 58.144 0.51806 58.144 57.772 58.29 0 31 20 3 0 0 0 0.48152 1 32432 32432 8.5933 2.2392 1 1734900 73901 3831 49522 50582 85882 85882 0.004866415951369163 VYAEVSRLLL 10 Unmodified _VYAEVSRLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8445434570312 2 581.845156 1161.67576 0.58056 0.00033779 0.031558 1.8362E-05 0.61212 0.00035616 581.8449287237606 72.433 0.24925 71.957 71.813 72.063 -0.47609 20 11 2 0 0 0 0.30604 1 39620 39620 37.075 21.826 1 1888800 73902 3078 49523 50583 85883 85883 0.10138847091275238 VYAEVSRLLL 10 Unmodified _VYAEVSRLLL_ 0 0 0 ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL ENSG00000114999|ENST00000233336|TTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.8453979492188 2 581.845156 1161.67576 1.021 0.00059405 -0.13554 -7.8862E-05 0.88543 0.00051518 581.8449870295959 71.847 0.36735 71.886 71.706 72.073 0.039024 56 17 4 0 0 0 0.033027 2 39601 39504;39601 75.571 45.73 1 22353000 73903 3078 49523 50583 85884;85885 85885 0.10138847091275238 VYAFDRALH 9 Unmodified _VYAFDRALH_ 0 0 0 REV__nc|ENSG00000087510|Q92754-2|TFAP2C REV__nc|ENSG00000087510|Q92754-2|TFAP2C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.73193359375 2 546.285266 1090.55598 -0.86473 -0.00047239 0.55847 0.00030508 -0.30627 -0.00016731 546.28546956878 32.22 0.18998 32.22 32.126 32.316 0 17 9 2 0 0 0 0.19735 1 16788 16788 15.248 3.0078 1 3785600 + 73904 17792 49524 50584 85886 85886 0.014322785373678926 VYAFKGETI 9 Unmodified _VYAFKGETI_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.278076171875 2 514.276575 1026.5386 -0.198 -0.00010183 1.5082 0.00077565 1.3102 0.00067382 514.277197124129 45.053 0.21037 45.053 44.959 45.17 0 14 10 2 0 0 0 0.094149 1 24551 24551 34.402 9.0024 1 4742300 73905 7532 49525 50585 85887 85887 0.026389382117031346 VYAFKGETI 9 Unmodified _VYAFKGETI_ 0 0 0 ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A ENSG00000166801|ENST00000675163|FAM111A MSMS AL20221201_MKP_PDAC_01 4 514.2771606445312 2 514.276575 1026.5386 NaN NaN NaN NaN NaN NaN NaN 50.404 1 44.865 44.365 45.365 -5.5391 0 0 0 0.10759 1 31613 31613 41.84 21.386 1 73906 7532 49525 50585 85888 85888 0.026389382117031346 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.26708984375 2 545.266207 1088.51786 0.22669 0.00012361 0.56656 0.00030893 0.79325 0.00043253 545.7677955672051 86.081 0.32861 86.081 85.913 86.242 0 29 16 2 0 0 0 0.37804 1 47655 47655 13.508 4.1604 1 858770 73907 2228 49526 50586 85889 85889 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2665405273438 2 545.266207 1088.51786 0.27821 0.0001517 0.42473 0.00023159 0.70294 0.00038329 545.2663743229317 86.607 0.48735 86.104 85.883 86.37 -0.50318 51 19 3 0 0 0 0.068777 2 47429 47326;47429 40.449 25.61 1 13480000 73908 2228 49526 50586 85890;85891 85891 -0.02285652167961416 VYAFNLDTF 9 Unmodified _VYAFNLDTF_ 0 0 0 ENST00000566349.5_1_16:87741959-87776602:-|nuORF;nc|ENSG00000104731|Q8TBB5-2|KLHDC4;nc|ENSG00000104731|Q8TBB5-3|KLHDC4;ENSG00000104731|ENST00000270583|KLHDC4;ENST00000562913.5_1_16:87744798-87760508:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF ENST00000566349.5_1_16:87741959-87776602:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2662353515625 2 545.266207 1088.51786 1.0488 0.0005719 0.74135 0.00040423 1.7902 0.00097613 545.26586469172 95.293 1.1643 89.117 88.496 89.66 -6.1757 209 68 4 0 0 0 0.027803 6 63031 62782;62907;63031;63155;63283;63409 56.541 32.339 1 46187000 73909 2228 49526 50586 85892;85893;85894;85895;85896;85897 85894 -0.02285652167961416 VYAFSIENF 9 Unmodified _VYAFSIENF_ 0 0 0 ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS ENST00000528557.5_1_1:26759436-26769365:+|nuORF ENST00000528557.5_1_1:26759436-26769365:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.265380859375 2 545.266207 1088.51786 0.29175 0.00015908 -1.0011 -0.00054587 -0.70935 -0.00038678 545.26551220248 85.223 0.3341 84.721 84.53 84.864 -0.5015 40 18 3 0 0 0 0.18465 1 46567 46567 24.674 11.166 1 15309000 73910 3331 49527 50587 85898 85898 -0.02285652167961416 VYAFSIENF 9 Unmodified _VYAFSIENF_ 0 0 0 ENST00000528557.5_1_1:26759436-26769365:+|nuORF;nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS ENST00000528557.5_1_1:26759436-26769365:+|nuORF ENST00000528557.5_1_1:26759436-26769365:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2651977539062 2 545.266207 1088.51786 0.2217 0.00012088 0.13281 7.2415E-05 0.3545 0.0001933 545.2663126074752 92.972 0.69958 86.797 86.415 87.114 -6.1757 98 46 3 0 0 0 0.016184 3 61355 61355;61484;61619 67.344 48.087 1 42151000 73911 3331 49527 50587 85899;85900;85901 85899 -0.02285652167961416 VYAGNFVEV 9 Unmodified _VYAGNFVEV_ 0 0 0 ENSG00000090520|ENST00000265028|DNAJB11;ENST00000464877.1_1_3:186289902-186295640:+|nuORF ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 997.499267578125 1 997.498923 996.491647 0.33111 0.00033028 -0.75674 -0.00075485 -0.42563 -0.00042457 997.4994003425053 60.52 0.27929 60.52 60.345 60.625 0 20 12 2 0 0 0 0.18465 1 33720 33720 24.674 1.5255 1 1669300 73912 1560 49528 50588 85902 85902 -0.006739213394212129 VYAGNFVEV 9 Unmodified _VYAGNFVEV_ 0 0 0 ENSG00000090520|ENST00000265028|DNAJB11;ENST00000464877.1_1_3:186289902-186295640:+|nuORF ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2532348632812 2 499.2531 996.491647 0.7144 0.00035667 -0.86869 -0.00043369 -0.15429 -7.7028E-05 499.2531592817083 60.504 0.35038 60.504 60.368 60.718 0 29 15 3 0 0 0 0.045537 1 33734 33734 46.921 27.482 1 5920100 73913 1560 49528 50588 85903 85903 -0.006739213394212129 VYAGNFVEV 9 Unmodified _VYAGNFVEV_ 0 0 0 ENSG00000090520|ENST00000265028|DNAJB11;ENST00000464877.1_1_3:186289902-186295640:+|nuORF ENSG00000090520|ENST00000265028|DNAJB11 ENSG00000090520|ENST00000265028|DNAJB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7535095214844 2 499.2531 996.491647 -0.47185 -0.00023557 -0.36203 -0.00018074 -0.83388 -0.00041632 499.2532089199454 61.088 0.21978 60.599 60.516 60.735 -0.48932 17 10 2 0 0 0 0.078417 1 33270 33270 38.151 18.712 1 2681100 73914 1560 49528 50588 85904 85904 -0.006739213394212129 VYAGREHFLF 10 Unmodified _VYAGREHFLF_ 0 0 0 nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5488891601562 3 413.548741 1237.62439 0.64867 0.00026826 0.084277 3.4852E-05 0.73294 0.00030311 413.5486640762806 52.531 0.23978 52.472 52.348 52.588 -0.058918 25 11 3 0 0 0 0.52097 1 28446 28446 22.775 18.585 1 4082600 73915 9351 49529 50589 85905 85905 0.015085231171951818 VYAGREHFLF 10 Unmodified _VYAGREHFLF_ 0 0 0 nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 nc|ENSG00000185247|P43364-2|MAGEA11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 413.548741 1237.62439 0.37437 0.00015482 -0.43667 -0.00018059 -0.062307 -2.5767E-05 413.54839657757816 52.87 0.15807 52.418 52.318 52.476 -0.45173 -0.027046 -0.00045498 NaN 22.775 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 841970 73916 9351 49529 50589 0.015085231171951818 VYAGYAPPS 9 Unmodified _VYAGYAPPS_ 0 0 0 ENSG00000178919|ENST00000375123|FOXE1 ENSG00000178919|ENST00000375123|FOXE1 ENSG00000178919|ENST00000375123|FOXE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 924.4470825195312 1 924.44616 923.438883 0.52643 0.00048665 0.47479 0.00043892 1.0012 0.00092557 924.4461616701673 62.482 0.23 61.994 61.851 62.081 -0.48764 12 10 2 0 0 0 0.045537 1 34044 34044 46.921 0 1 1045000 73917 8782 49530 50590 85906 85906 -0.025898794022396032 VYAHFPINVVI 11 Unmodified _VYAHFPINVVI_ 0 0 0 ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENSG00000163682|ENST00000295955|RPL9;ENST00000511075.5_1_4:39457912-39460059:-|nuORF ENST00000439124.1_1_6:64325734-64326112:-|nuORF;ENST00000511075.5_1_4:39457912-39460059:-|nuORF ENST00000511075.5_1_4:39457912-39460059:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3609008789062 2 636.360973 1270.70739 1.3782 0.00087705 -0.64757 -0.00041209 0.73065 0.00046496 636.3601351079902 98.219 0.17933 92.044 91.968 92.148 -6.1757 31 11 4 0 0 0 0.032115 1 65113 65113 54.774 36.639 1 64936000 73918 7047;14602 49531 50591 85907 85907 0.08286839845209215 VYAHIYHQHF 10 Unmodified _VYAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.8837280273438 3 438.884123 1313.63054 0.38755 0.00017009 0.5885 0.00025829 0.97606 0.00042838 439.218870848705 26.834 0.10339 26.802 26.733 26.836 -0.031708 10 6 2 0 0 0 0.024981 1 13799 13799 51.415 39.24 1 18949000 73919 3075 49532 50592 85908 85908 -0.013729586512681635 VYAHIYHQHF 10 Unmodified _VYAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8843078613281 3 438.884123 1313.63054 0.47806 0.00020981 -0.20966 -9.2017E-05 0.26839 0.00011779 438.88409734549344 26.719 0.27795 26.747 26.59 26.868 0.028664 29 11 4 0 0 0 0.017277 1 13830 13830 57.249 48.963 1 55247000 73920 3075 49532 50592 85909 85909 -0.013729586512681635 VYAHIYHQHF 10 Unmodified _VYAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 438.884765625 3 438.884123 1313.63054 0.82348 0.00036141 0.0017069 7.4914E-07 0.82518 0.00036216 438.8841402166246 30.133 0.38883 26.636 26.467 26.856 -3.497 58 18 4 0 0 0 0.0020965 2 16917 16917;17033 80.676 69.777 1 214960000 73921 3075 49532 50592 85910;85911 85910 -0.013729586512681635 VYAHIYHQHF 10 Unmodified _VYAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.8228149414062 2 657.822547 1313.63054 0.49061 0.00032273 -0.30058 -0.00019773 0.19003 0.000125 657.8225334651792 30.176 0.22694 26.679 26.553 26.779 -3.497 18 10 2 0 0 0 6.3408E-07 1 16986 16986 133.7 103.86 1 15319000 73922 3075 49532 50592 85912 85912 -0.013729586512681635 VYAIHHQQL 9 Unmodified _VYAIHHQQL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.2015075683594 3 370.201452 1107.58253 NaN NaN NaN NaN NaN NaN NaN 25.425 1 25.425 24.925 25.925 0 0 0 0 0.20498 1 13034 13034 21.537 12.792 1 73923 7770 49533 50593 85913 85913 0.03303967428701071 VYAIHHQQL 9 Unmodified _VYAIHHQQL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.2012329101562 3 370.201452 1107.58253 1.2637 0.00046784 0.17902 6.6275E-05 1.4428 0.00053411 370.2014301347972 28.497 0.39678 25.349 25.119 25.515 -3.1482 52 20 3 0 0 0 0.019979 2 15813 15813;15934 56.177 33.519 1 55065000 73924 7770 49533 50593 85914;85915 85914 0.03303967428701071 VYAIIMTDLF 10 Unmodified _VYAIIMTDLF_ 0 0 0 nc|ENSG00000145723|Q9NXP7-3|GIN1;ENSG00000145723|ENST00000399004|GIN1 nc|ENSG00000145723|Q9NXP7-3|GIN1 nc|ENSG00000145723|Q9NXP7-3|GIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3164672851562 2 593.314843 1184.61513 0.54471 0.00032319 0.51981 0.00030841 1.0645 0.0006316 593.3159889330439 101.55 0.10565 95.37 95.309 95.414 -6.1757 13 4 4 0 0 0 0.22102 1 68153 68153 32.117 17.279 1 16745000 73925 5716 49534 50594 85916 85916 0.03020993716677367 VYAIKNHYW 9 Unmodified _VYAIKNHYW_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.541748046875 3 398.541586 1192.60293 0.2365 9.4254E-05 0.16557 6.5987E-05 0.40207 0.00016024 398.5416862760387 40.248 0.27184 40.253 40.088 40.36 0.0050545 40 12 4 0 0 0 0.023164 1 21409 21409 45.7 37.255 1 18891000 73926 1205 49535 50595 85917 85917 0.01433138088486885 VYAIKNHYW 9 Unmodified _VYAIKNHYW_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3096923828125 2 597.308741 1192.60293 0.26121 0.00015602 0.49971 0.00029848 0.76092 0.0004545 597.308936650224 40.249 0.22958 40.254 40.108 40.337 0.0050583 14 10 2 0 0 0 0.010877 1 21456 21456 77.984 51.101 1 1902000 73927 1205 49535 50595 85918 85918 0.01433138088486885 VYAIKNHYW 9 Unmodified _VYAIKNHYW_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5419311523438 3 398.541586 1192.60293 0.73076 0.00029124 -0.47302 -0.00018852 0.25774 0.00010272 398.54127494415366 44.572 0.42209 39.72 39.471 39.893 -4.852 77 33 3 0 0 0 0.023164 2 27113 27113;27243 45.7 34.634 1 59394000 73928 1205 49535 50595 85919;85920 85919 0.01433138088486885 VYAIKNHYW 9 Unmodified _VYAIKNHYW_ 0 0 0 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3080444335938 2 597.308741 1192.60293 0.1364 8.1476E-05 -0.53029 -0.00031675 -0.39389 -0.00023527 597.8099558879604 44.555 0.34015 39.703 39.486 39.827 -4.852 43 26 2 0 0 0 0.000405 2 27166 27166;27296 146.01 113.7 1 19126000 73929 1205 49535 50595 85921;85922 85921 0.01433138088486885 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7872009277344 2 493.78711 985.559667 0.4448 0.00021964 -0.14363 -7.0925E-05 0.30117 0.00014871 493.78695974023475 59.853 0.39329 59.363 59.151 59.545 -0.49079 60 19 4 0 0 0 0.023164 2 32496 32496;32597 60.39 15.983 1 61829000 73930 1999 49536 50596 85923;85924 85923 0.06630948311226348 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7869873046875 2 493.78711 985.559667 0.50419 0.00024896 0.037772 1.8651E-05 0.54196 0.00026761 493.78708843733705 59.504 0.38122 59.45 59.253 59.634 -0.053062 61 19 4 0 0 0 0.023164 2 32361 32361;32467 60.39 15.983 1 123950000 73931 1999 49536 50596 85925;85926 85925 0.06630948311226348 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7872924804688 2 493.78711 985.559667 0.77785 0.00038409 0.62881 0.0003105 1.4067 0.00069459 493.7872514045315 65.011 1.0438 58.835 58.45 59.494 -6.1757 175 58 4 0 0 0 0.0081063 5 42014 42014;42141;42277;42403;42533 93.883 40.308 1 487060000 73932 1999 49536 50596 85927;85928;85929;85930;85931 85927 0.06630948311226348 VYAILTHGI 9 Unmodified _VYAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 986.56884765625 1 986.566943 985.559667 0.77992 0.00076944 -0.52816 -0.00052106 0.25176 0.00024838 986.566920886721 65.011 0.40915 58.835 58.644 59.053 -6.1757 37 22 2 0 0 0 0.0012811 1 42198 42198 137.59 74.022 1 14478000 73933 1999 49536 50596 85932 85932 0.06630948311226348 VYAILTHGIF 10 Unmodified _VYAILTHGIF_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.321533203125 2 567.321317 1132.62808 1.4898 0.00084518 -0.44366 -0.0002517 1.0461 0.00059349 567.3210201506568 95.789 0.36931 89.613 89.508 89.877 -6.1757 43 22 3 0 0 0 0.11654 1 63547 63547 61.357 32.863 1 21105000 73934 1999 49537 50597 85933 85933 0.06707192891076375 VYAINRQRL 9 Unmodified _VYAINRQRL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2245788574219 3 378.224368 1131.65128 0.057462 2.1734E-05 0.33876 0.00012813 0.39622 0.00014986 378.22423836607777 29.127 0.19804 29.157 29.03 29.228 0.030106 15 7 3 0 0 0 0.07087 1 15168 15168 39.95 17.175 1 7161700 73935 3399 49538 50598 85934 85934 0.0907163172842047 VYAINRQRL 9 Unmodified _VYAINRQRL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.2243041992188 3 378.224368 1131.65128 1.4714 0.00055653 -1.7506 -0.00066212 -0.27917 -0.00010559 378.224165264759 32.473 0.45649 28.617 28.319 28.776 -3.8562 61 25 4 0 0 0 0.38785 1 18455 18455 13.042 2.243 1 37608000 73936 3399 49538 50598 85935 85935 0.0907163172842047 VYAINRQRL 9 Unmodified _VYAINRQRL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.833984375 2 566.832914 1131.65128 1.1243 0.00063727 -0.28904 -0.00016384 0.83523 0.00047343 566.8329941693752 32.414 0.23798 28.558 28.494 28.732 -3.8562 22 12 2 0 0 0 0.10247 1 18494 18494 28.487 11.545 1 6757000 73937 3399 49538 50598 85936 85936 0.0907163172842047 VYAKANSF 8 Unmodified _VYAKANSF_ 0 0 0 ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP ENSG00000115677|ENST00000310931|HDLBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2353515625 2 450.23471 898.454868 -0.083035 -3.7385E-05 1.0715 0.00048244 0.9885 0.00044506 450.23501352248996 24.734 0.19966 24.734 24.624 24.823 0 22 11 3 0 0 0 0.42423 1 12633 12633 42.095 21.223 1 960280 73938 3152 49539 50599 85937 85937 0.001578268346634104 VYAKLLHRY 9 Unmodified _VYAKLLHRY_ 0 0 0 ENSG00000103264|ENST00000311635|FBXO31;nc|ENSG00000103264|Q5XUX0-2|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.22900390625 3 388.229231 1161.66586 0.1651 6.4095E-05 -0.172 -6.6777E-05 -0.0069079 -2.6818E-06 388.22911668461666 27.084 0.21854 27.112 27.002 27.22 0.028662 31 10 4 0 0 0 0.019303 1 14046 14046 49.554 38.06 1 84803000 73939 2121 49540 50600 85938 85938 0.0914970387655103 VYAKLLHRY 9 Unmodified _VYAKLLHRY_ 0 0 0 ENSG00000103264|ENST00000311635|FBXO31;nc|ENSG00000103264|Q5XUX0-2|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2303161621094 3 388.229231 1161.66586 1.3955 0.00054178 0.96698 0.00037541 2.3625 0.00091719 388.22991912019927 30.447 0.56419 26.95 26.757 27.321 -3.497 67 27 4 0 0 0 0.019303 2 17102 17102;17213 49.554 38.06 1 171110000 73940 2121 49540 50600 85939;85940 85939 0.0914970387655103 VYAKLLHRY 9 Unmodified _VYAKLLHRY_ 0 0 0 ENSG00000103264|ENST00000311635|FBXO31;nc|ENSG00000103264|Q5XUX0-2|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 ENSG00000103264|ENST00000311635|FBXO31 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.8396606445312 2 581.840208 1161.66586 1.0169 0.00059165 0.12003 6.9836E-05 1.1369 0.00066148 581.8400800819869 30.462 0.25054 26.965 26.797 27.047 -3.497 22 12 2 0 0 0 0.0014543 1 17154 17154 136.33 105.07 1 16305000 73941 2121 49540 50600 85941 85941 0.0914970387655103 VYAKYWIYV 9 Unmodified _VYAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.8231811523438 2 602.823692 1203.63283 -0.022105 -1.3325E-05 0.19936 0.00012018 0.17725 0.00010685 602.8232334858175 72.343 0.38353 72.385 72.21 72.594 0.041725 41 17 4 0 0 0 0.2324 1 39829 39829 28.487 19.741 1 5117000 73942 2128 49541 50601 85942 85942 0.039160770338412476 VYAKYWIYV 9 Unmodified _VYAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.3239135742188 2 602.823692 1203.63283 0.55694 0.00033574 0.065367 3.9405E-05 0.6223 0.00037514 602.8242196308314 89.546 0.44621 83.37 83.239 83.685 -6.1757 35 24 2 0 0 0 0.18144 1 59187 59187 34.102 20.595 1 10631000 73943 2128 49541 50601 85943 85943 0.039160770338412476 VYAKYWIYV 9 Unmodified _VYAKYWIYV_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MSMS AL20221201_MKP_PDAC_01 4 602.82373046875 2 602.823692 1203.63283 NaN NaN NaN NaN NaN NaN NaN 89.453 1 83.277 82.777 83.777 -6.1757 0 0 0 0.20976 1 59049 59049 39.957 26.051 1 73944 2128 49541 50601 85944 85944 0.039160770338412476 VYALELLTI 9 Unmodified _VYALELLTI_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8079833984375 2 517.810251 1033.60595 1.1135 0.00057659 -0.52958 -0.00027422 0.58393 0.00030236 517.8104011651927 100.55 0.10924 100.51 100.43 100.53 -0.04216 9 3 4 0 0 0 0.10925 1 55857 55857 32.117 15.175 1 11635000 73945 2781 49542 50602 85945 85945 0.09048968422666803 VYALELLTI 9 Unmodified _VYALELLTI_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8110961914062 2 517.810251 1033.60595 0.94699 0.00049036 -1.8072 -0.00093578 -0.8602 -0.00044542 517.8101405807915 101.39 0.16425 95.219 95.144 95.309 -6.1757 25 8 4 0 0 0 0.045537 1 68008 68008 46.921 8.9469 1 89076000 73946 2781 49542 50602 85946 85946 0.09048968422666803 VYALFWFL 8 Unmodified _VYALFWFL_ 0 0 0 ENST00000395878.7_1_16:23585535-23585652:+|nuORF ENST00000395878.7_1_16:23585535-23585652:+|nuORF ENST00000395878.7_1_16:23585535-23585652:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7908935546875 2 529.789121 1057.56369 0.74537 0.00039489 3.5378 0.0018743 4.2831 0.0022692 529.7906971151591 81.02 0.2272 80.527 80.334 80.561 -0.49247 15 9 2 0 0 0 0.70131 1 44330 44330 17.087 0.14425 1 2258100 73947 12779 49543 50603 85947 85947 0.03721037804916705 VYALVVVSY 9 Unmodified _VYALVVVSY_ 0 0 0 nc|ENSG00000198856|Q9NRP0-2|OSTC;ENSG00000198856|ENST00000361564|OSTC;ENST00000510556.1_1_4:109571811-109578607:+|nuORF nc|ENSG00000198856|Q9NRP0-2|OSTC nc|ENSG00000198856|Q9NRP0-2|OSTC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 506.83349609375 2 506.789318 1011.56408 1.0832 0.00054895 2.1679 0.0010987 3.2511 0.0016476 506.7898858083263 89.104 0.24506 82.928 82.706 82.951 -6.1757 17 13 2 0 0 0 0.11303 1 58797 58797 34.187 13.316 1 5737600 73948 10175 49544 50604 85948 85948 0.05876412734130554 VYALYRQLL 9 Unmodified _VYALYRQLL_ 0 0 0 nc|ENSG00000167962|Q86UK7-2|ZNF598;nc|ENSG00000167962|Q86UK7-3|ZNF598;nc|ENSG00000167962|Q86UK7|ZNF598;ENSG00000167962|ENST00000562103|ZNF598;ENST00000562988.5_1_16:2052496-2059683:-|nuORF nc|ENSG00000167962|Q86UK7-2|ZNF598 nc|ENSG00000167962|Q86UK7-2|ZNF598 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8351440429688 2 569.834591 1137.65463 NaN NaN NaN NaN NaN NaN NaN 67.351 1 67.369 66.869 67.869 0.018028 0 0 0 0.014715 1 36971 36971 97.075 52.668 1 73949 7685 49545 50605 85949 85949 0.09130881782425604 VYANGIRNI 9 Unmodified _VYANGIRNI_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.2861022949219 2 510.285266 1018.55598 -0.70528 -0.0003599 1.1375 0.00058045 0.43222 0.00022056 510.28586526941825 36.376 0.22821 36.126 36.004 36.232 -0.2497 25 10 3 0 0 0 0.016184 1 19063 19063 67.344 22.937 1 6762800 73950 5701 49546 50606 85950 85950 0.047442785373846164 VYANGIRNI 9 Unmodified _VYANGIRNI_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2864074707031 2 510.285266 1018.55598 0.10385 5.2992E-05 0.64945 0.00033141 0.7533 0.0003844 510.28600550222916 36.073 0.15619 36.098 36.012 36.168 0.024967 9 6 2 0 0 0 0.095405 1 19102 19102 34.102 10.954 1 1515300 73951 5701 49546 50606 85951 85951 0.047442785373846164 VYANGIRNI 9 Unmodified _VYANGIRNI_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2866821289062 2 510.285266 1018.55598 0.52094 0.00026583 0.36911 0.00018835 0.89005 0.00045418 510.2855779993445 40.575 0.46862 36.046 35.806 36.275 -4.5294 72 28 3 0 0 0 0.0082281 3 24380 24111;24249;24380 92.822 36.645 1 43362000 73952 5701 49546 50606 85952;85953;85954 85954 0.047442785373846164 VYANGQHLF 9 Unmodified _VYANGQHLF_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7650146484375 2 524.764166 1047.51378 0.6766 0.00035505 0.5728 0.00030058 1.2494 0.00065564 524.7645845823189 42.296 0.20186 42.296 42.199 42.401 0 18 9 3 0 0 0 0.052168 1 22891 22891 44.407 19.733 1 3190800 73953 8134 49547 50607 85955 85955 -0.008076968710156507 VYANGQHLF 9 Unmodified _VYANGQHLF_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.764404296875 2 524.764166 1047.51378 -0.01636 -8.5849E-06 -0.13777 -7.2295E-05 -0.15413 -8.088E-05 524.7640171609115 42.591 0.25912 42.285 42.124 42.383 -0.30682 20 12 2 0 0 0 0.0094915 1 22586 22586 81.864 51.228 1 20279000 73954 8134 49547 50607 85956 85956 -0.008076968710156507 VYANGQHLFDF 11 Unmodified _VYANGQHLFDF_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.8125610351562 2 655.811845 1309.60914 0.30741 0.00020161 0.47771 0.00031329 0.78513 0.0005149 655.8122903169397 66.889 0.27487 66.405 66.294 66.569 -0.48323 30 12 3 0 0 0 0.11933 1 36520 36520 40.239 22.093 1 1985200 73955 8134 49548 50608 85957 85957 -0.03328388470640675 VYANGQHLFDF 11 Unmodified _VYANGQHLFDF_ 0 0 0 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 ENSG00000171747|ENST00000307751|LGALS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 655.811845 1309.60914 1.4067 0.00092252 -0.75747 -0.00049676 0.64921 0.00042576 655.811213922337 66.398 0.2001 66.407 66.28 66.48 0.0095596 0.00079418 -0.00092366 NaN 40.239 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1712600 73956 8134 49548 50608 -0.03328388470640675 VYAPALALNQ 10 Unmodified _VYAPALALNQ_ 0 0 0 nc|ENSG00000148942|Q1EHB4-2|SLC5A12;ENSG00000148942|ENST00000396005|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 nc|ENSG00000148942|Q1EHB4-2|SLC5A12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2949829101562 2 530.295299 1058.57605 NaN NaN NaN NaN NaN NaN NaN 6.2117 1 6.2117 5.7117 6.7117 0 0 0 0 1.0061 1 2983 2983 0 0 1 73957 5976 49549 50609 85958 85958 0.04910029477287026 VYAPPVGGFSF 11 Unmodified _VYAPPVGGFSF_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7;nc|ENSG00000136930|Q99436-2|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7908325195312 2 570.78985 1139.56515 0.75649 0.0004318 1.1298 0.00064486 1.8863 0.0010767 570.7904568622112 82.988 0.46796 83.05 82.764 83.232 0.062004 27 17 2 0 0 0 0.0074511 1 45856 45856 71.134 45.734 1 4459500 73958 4883 49550 50610 85959 85959 0.0009462710304433131 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.2044982910156 3 372.204974 1113.59309 -0.61141 -0.00022757 0.053218 1.9808E-05 -0.55819 -0.00020776 372.20493115606337 15.875 0.21185 15.875 15.76 15.972 0 147 48 4 0 0 0 0.12841 1 7666 7666 21.537 4.4241 1 10609000 73959 9940 49551 50611 85960 85960 0.04083950083122545 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.803955078125 2 557.803823 1113.59309 -0.25486 -0.00014216 0.38691 0.00021582 0.13206 7.3661E-05 557.8039882869904 15.875 0.13766 15.875 15.799 15.937 0 64 31 3 0 0 0 0.49272 1 7673 7673 7.9102 3.1541 1 968930 73960 9940 49551 50611 85961 85961 0.04083950083122545 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2050476074219 3 372.204974 1113.59309 0.0073914 2.7511E-06 0.16137 6.0063E-05 0.16876 6.2814E-05 372.2049607485692 15.934 0.17168 15.939 15.847 16.019 0.0050564 30 14 3 0 0 0 0.30562 1 7970 7970 16.149 11.62 1 2358000 73961 9940 49551 50611 85962 85962 0.04083950083122545 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.205322265625 3 372.204974 1113.59309 0.75753 0.00028196 0.58263 0.00021686 1.3402 0.00049881 372.2047260784146 16.625 0.41996 14.068 13.813 14.233 -2.557 165 64 4 0 0 0 0.087258 2 8685 8581;8685 32.786 19.028 1 54552000 73962 9940 49551 50611 85963;85964 85964 0.04083950083122545 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.8046264648438 2 557.803823 1113.59309 0.32938 0.00018373 0.2974 0.00016589 0.62678 0.00034962 557.8039941906707 16.615 0.18619 14.058 13.976 14.163 -2.557 71 28 3 0 0 0 0.0090851 1 8591 8591 85.357 56.275 1 7853300 73963 9940 49551 50611 85965 85965 0.04083950083122545 VYAQKHQQL 9 Unmodified _VYAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 557.803823 1113.59309 0.3352 0.00018698 0.23183 0.00012931 0.56703 0.00031629 557.8037342083808 15.942 0.054353 15.947 15.91 15.964 0.0050564 0.03591 -0.00016526 NaN 7.9102 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 243410 73964 9940 49551 50611 0.04083950083122545 VYAQVARL 8 Unmodified _VYAQVARL_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2712097167969 2 460.271627 918.528701 -0.16333 -7.5175E-05 0.51011 0.00023479 0.34678 0.00015961 460.2717647277384 39.444 0.27885 39.147 39.029 39.308 -0.29716 26 12 3 0 0 0 0.15234 1 20799 20799 86.121 32.546 1 5501000 73965 7870 49552 50612 85966 85966 0.0661779499697559 VYAQVARL 8 Unmodified _VYAQVARL_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 460.7037353515625 2 460.271627 918.528701 0.58363 0.00026863 0.46739 0.00021513 1.051 0.00048375 460.27191353488547 43.971 0.37852 39.206 39.002 39.381 -4.7648 42 24 2 0 0 0 8.7369 1 26653 26653 38.151 15.003 1 22879000 73966 7870 49552 50612 85967 85967 0.0661779499697559 VYAQVARLF 9 Unmodified _VYAQVARLF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8062744140625 2 533.805834 1065.59712 0.44713 0.00023868 -0.25538 -0.00013632 0.19175 0.00010236 533.8058034247044 63.29 0.37117 63.269 63.089 63.46 -0.021614 64 18 4 0 0 0 0.0082281 2 34680 34575;34680 92.822 37.011 1 67738000 73967 7870 49553 50613 85968;85969 85969 0.06694039576836985 VYAQVARLF 9 Unmodified _VYAQVARLF_ 0 0 0 ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF ENSG00000169375|ENST00000394947|SIN3A ENSG00000169375|ENST00000394947|SIN3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.8075561523438 2 533.805834 1065.59712 0.70707 0.00037744 1.6042 0.00085631 2.3112 0.0012337 533.8066399829856 68.372 0.61624 62.196 61.975 62.592 -6.1757 69 36 2 0 0 0 0.0088975 3 44779 44514;44647;44779 104.8 40.563 1 73777000 73968 7870 49553 50613 85970;85971;85972 85972 0.06694039576836985 VYARVYTCV 9 Unmodified _VYARVYTCV_ 0 0 0 ENST00000308020.5_1_11:490638-491184:+|nuORF ENST00000308020.5_1_11:490638-491184:+|nuORF ENST00000308020.5_1_11:490638-491184:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2845458984375 2 537.276052 1072.53755 0.52806 0.00028371 0.077874 4.184E-05 0.60593 0.00032555 537.2761031049095 58.753 0.67962 58.692 58.486 59.166 -0.060719 104 33 5 0 0 0 0.51218 1 32072 32072 6.7232 0 1 83893000 73969 11648 49554 50614 85973 85973 0.004184005711522332 VYASDRATF 9 Unmodified _VYASDRATF_ 0 0 0 ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF;nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2 ENST00000464583.5_1_6:4119386-4125894:-|nuORF ENST00000464583.5_1_6:4119386-4125894:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2534790039062 2 515.253631 1028.49271 -0.49123 -0.00025311 -1.9878 -0.0010242 -2.4791 -0.0012773 515.2530646944807 30.588 0.24751 30.588 30.443 30.69 0 27 11 3 0 0 0 0.036857 1 15874 15874 51.63 7.7715 1 5894500 73970 10133 49555 50615 85974 85974 -0.020397069705495596 VYASFALCMF 10 Carbamidomethyl (C),Oxidation (M) _VYASFALC(Carbamidomethyl (C))M(Oxidation (M))F_ VYASFALC(1)MF VYASFALCM(1)F VYASFALC(82)MF VYASFALCM(82)F 0 1 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.7760620117188 2 612.775028 1223.5355 0.93953 0.00057572 -0.14622 -8.9597E-05 0.79332 0.00048613 612.7752713816146 89.968 0.75307 83.793 83.418 84.171 -6.1757 129 42 4 0 0 0 0.013198 2 59473 59220;59473 81.864 61.41 1 57923000 73971 5175 49556 50616 85975;85976 85976 529 951 -0.06732396228949256 VYASFALCMF 10 Carbamidomethyl (C) _VYASFALC(Carbamidomethyl (C))MF_ VYASFALC(1)MF VYASFALC(60)MF 0 1 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.778076171875 2 604.77757 1207.54059 0.62797 0.00037978 -0.36371 -0.00021996 0.26426 0.00015982 604.7775954850456 100.74 0.14713 94.564 94.488 94.635 -6.1757 31 10 4 0 0 0 0.045724 1 67426 67426 60.39 46.484 1 190290000 73972 5175 49556 50617 85977 85977 529 -0.05488092366363162 VYASLGALLF 10 Unmodified _VYASLGALLF_ 0 0 0 ENST00000533377.1_1_8:145066406-145067006:+|nuORF;ENSG00000178719|ENST00000395068|GRINA ENST00000533377.1_1_8:145066406-145067006:+|nuORF ENST00000533377.1_1_8:145066406-145067006:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3037719726562 2 527.302593 1052.59063 1.3669 0.00072076 -0.76746 -0.00040469 0.59942 0.00031607 527.3021336462001 100.4 0.112 100.37 100.29 100.4 -0.036301 5 3 2 0 0 0 0.081241 1 55791 55791 50.855 10.898 1 3663300 73973 8768 49557 50618 85978 85978 0.06644101625465737 VYATFFEIYSG 11 Unmodified _VYATFFEIYSG_ 0 0 0 nc|ENSG00000068796|O00139-2|KIF2A;nc|ENSG00000068796|O00139-1|KIF2A;nc|ENSG00000068796|O00139-5|KIF2A;nc|ENSG00000068796|O00139|KIF2A;ENSG00000068796|ENST00000407818|KIF2A nc|ENSG00000068796|O00139-2|KIF2A nc|ENSG00000068796|O00139-2|KIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.8759155273438 3 432.876411 1295.6074 1.4315 0.00061966 -0.28984 -0.00012547 1.1416 0.00049419 432.87628416711885 35.943 0.52163 31.75 31.474 31.996 -4.1928 111 32 4 0 0 0 0.56638 1 20784 20784 7.0371 0.41363 1 80525000 73974 987 49558 50619 85979 85979 -0.028574422792416954 VYAVCTSSLFL 11 Unmodified _VYAVCTSSLFL_ 0 0 0 REV__nc|ENSG00000171557|P02679-2|FGG REV__nc|ENSG00000171557|P02679-2|FGG MSMS AL20221201_MKP_PDAC_01 4 601.8077392578125 2 601.809925 1201.6053 NaN NaN NaN NaN NaN NaN NaN 93.635 1 87.459 86.959 87.959 -6.1757 0 0 0 0.51453 1 61988 61988 24.021 0.23079 1 + 73975 22574 49559 50620 85980 85980 0.012558057112983079 VYAVIPAEKF 10 Unmodified _VYAVIPAEKF_ 0 0 0 nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1;ENST00000474020.5_1_1:47118240-47133739:-|nuORF nc|ENSG00000123472|Q5TC12-2|ATPAF1 nc|ENSG00000123472|Q5TC12-2|ATPAF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8218383789062 2 568.82115 1135.62775 1.2113 0.00068902 0.78454 0.00044626 1.9959 0.0011353 568.8217374228458 64.75 0.84642 58.575 58.315 59.162 -6.1757 91 47 3 0 0 0 0.10406 1 41881 41881 45.74 20.341 1 33628000 73976 3711 49560 50621 85981 85981 0.06535773171231085 VYAVPILIF 9 Unmodified _VYAVPILIF_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.8179931640625 2 517.817879 1033.6212 0.87981 0.00045558 0.13648 7.067E-05 1.0163 0.00052625 517.8182783872313 102.14 0.15049 95.96 95.877 96.027 -6.1757 10 6 2 0 0 0 0.028712 1 68534 68534 56.048 10.298 1 11363000 73977 4587 49561 50622 85982 85982 0.10573880010497305 VYAVTKVQMS 10 Unmodified _VYAVTKVQMS_ 0 0 0 REV__ENSG00000118412|ENST00000551025|CASP8AP2 REV__ENSG00000118412|ENST00000551025|CASP8AP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3016357421875 2 563.302267 1124.58998 0.69399 0.00039093 -3.2806 -0.001848 -2.5866 -0.001457 563.3006922729861 59.479 0.13277 59.426 59.346 59.479 -0.053062 10 6 2 0 0 0 0.44171 1 32415 32415 19.362 2.249 1 2422500 + 73978 19148 49562 50623 85983 85983 0.03266938914111961 VYAVVRGLF 9 Unmodified _VYAVVRGLF_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.302978515625 2 512.302927 1022.5913 0.91257 0.00046751 0.30426 0.00015587 1.2168 0.00062338 512.3031473628478 68.805 0.26263 68.83 68.681 68.944 0.025146 26 11 3 0 0 0 0.031062 1 37782 37782 54.774 37.831 1 6535300 73979 5019 49563 50624 85984 85984 0.08090941065188417 VYAVVRGLFL 10 Unmodified _VYAVVRGLFL_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8461303710938 2 568.844959 1135.67537 1.5567 0.00088555 0.73611 0.00041874 2.2929 0.0013043 568.8451393507623 81.436 0.37256 81.496 81.287 81.659 0.059929 31 13 4 0 0 0 0.013171 1 45023 45023 81.89 53.403 1 7130500 73980 5019 49564 50625 85985 85985 0.11295472162078113 VYAVVRGLFL 10 Unmodified _VYAVVRGLFL_ 0 0 0 ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A ENSG00000138111|ENST00000238936|MFSD13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8450927734375 2 568.844959 1135.67537 1.5882 0.00090342 -1.7888 -0.0010176 -0.20065 -0.00011414 568.8445406114739 98.172 0.22552 91.996 91.847 92.072 -6.1757 30 14 3 0 0 0 0.013171 1 65064 65064 81.89 45.846 1 62379000 73981 5019 49564 50625 85986 85986 0.11295472162078113 VYCARFVEL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))ARFVEL_ VYC(1)ARFVEL VYC(96)ARFVEL 0 1 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7954711914062 2 578.794609 1155.57467 0.39411 0.00022811 0.051797 2.998E-05 0.44591 0.00025809 578.7944517087584 57.926 0.33064 57.436 57.267 57.598 -0.48974 64 15 5 0 0 0 0.0082353 1 31443 31443 96.111 57.96 1 23896000 73982 3869 49565 50626 85987 85987 391 0.0031007211689484393 VYCARFVEL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))ARFVEL_ VYC(1)ARFVEL VYC(58)ARFVEL 0 1 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7951049804688 2 578.794609 1155.57467 0.84441 0.00048874 -0.18795 -0.00010879 0.65645 0.00037995 578.7944948643765 63.23 1.5568 57.055 56.759 58.315 -6.1757 222 85 4 0 0 0 0.025842 1 40890 40890 57.722 30.093 1 672250000 73983 3869 49565 50626 85988 85988 391 0.0031007211689484393 VYCARFVEL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))ARFVEL_ 0 1 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.794609 1155.57467 0.63585 0.00036803 -1.2544 -0.00072606 -0.61858 -0.00035803 578.7929761270622 57.424 0.16599 57.424 57.301 57.467 0 0.074082 -0.0013806 NaN 96.111 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 703510 73984 3869 49565 50626 391 0.0031007211689484393 VYCASCICYML 11 Unmodified _VYCASCICYML_ 0 0 0 nc|ENSG00000164219|P53609-2|PGGT1B;ENST00000296642.4_1_5:114552647-114588833:-|nuORF;ENSG00000164219|ENST00000419445|PGGT1B nc|ENSG00000164219|P53609-2|PGGT1B nc|ENSG00000164219|P53609-2|PGGT1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5112609863281 3 423.510924 1267.51094 1.03 0.00043621 -0.2349 -9.9482E-05 0.79508 0.00033673 423.5108614646806 62.221 0.26278 56.046 56.002 56.265 -6.1757 19 14 2 0 0 0 0.67922 1 40107 40107 2.8433 0.21205 1 20017000 73985 16336 49566 50627 85989 85989 -0.11211115698370122 VYCDTEID 8 Unmodified _VYCDTEID_ 0 0 0 REV__ZC3H7B-RBX1|1|fusion REV__ZC3H7B-RBX1|1|fusion MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.1966552734375 2 479.197133 956.379713 0.22366 0.00010718 -0.72029 -0.00034516 -0.49663 -0.00023798 479.19782986556027 64.34 0.12566 64.34 64.301 64.427 0 7 5 2 0 0 0 8.7369 1 35923 35923 0 0 1 267290 + 73986 18063 49567 50628 85990 85990 -0.10022143478749967 VYCFDESL 8 Unmodified _VYCFDESL_ 0 0 0 REV__ENSG00000198862|ENST00000361371|LTN1 REV__ENSG00000198862|ENST00000361371|LTN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.8743591308594 2 488.210043 974.405534 NaN NaN NaN NaN NaN NaN NaN 85.245 1 85.245 84.745 85.745 0 0 0 0 0.97444 1 47246 47246 0.79363 0 1 + 73987 24081 49568 50629 85991 85991 -0.0826924923644583 VYCHYFVKL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))HYFVKL_ VYC(1)HYFVKL VYC(60)HYFVKL 0 1 0 nc|ENSG00000082515|Q9NWU5-2|MRPL22;nc|ENSG00000082515|Q9NWU5-3|MRPL22;ENSG00000082515|ENST00000523037|MRPL22 nc|ENSG00000082515|Q9NWU5-2|MRPL22 nc|ENSG00000082515|Q9NWU5-2|MRPL22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2118225097656 3 410.21096 1227.61105 0.74423 0.00030529 0.46297 0.00018992 1.2072 0.00049521 410.2111410086249 53.287 0.42669 47.483 47.267 47.693 -5.8042 50 26 3 0 0 0 0.023481 2 33716 33584;33716 60.074 42.631 1 31424000 73988 1347 49569 50630 85992;85993 85993 122 0.00634949013624464 VYCKPLFY 8 Unmodified _VYCKPLFY_ 0 0 0 REV__ENSG00000173662|ENST00000333172|TAS1R1 REV__ENSG00000173662|ENST00000333172|TAS1R1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.714111328125 2 516.764789 1031.51502 0.31979 0.00016526 -0.3493 -0.0001805 -0.029509 -1.5249E-05 516.7646143633247 58.938 0.35506 58.938 58.768 59.123 0 39 15 3 0 0 0 8.7369 1 32740 32740 19.439 2.3524 1 7076300 + 73989 22742 49570 50631 85994 85994 0.0005280117352413072 VYCPVQWEY 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))PVQWEY_ VYC(1)PVQWEY VYC(51)PVQWEY 0 1 0 ENSG00000172053|ENST00000306125|QARS1;nc|ENSG00000172053|P47897-2|QARS1 ENSG00000172053|ENST00000306125|QARS1 ENSG00000172053|ENST00000306125|QARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2771606445312 2 622.276249 1242.53795 0.68428 0.00042581 1.4271 0.00088808 2.1114 0.0013139 622.2766274778864 72.503 0.40349 66.327 66.159 66.562 -6.1757 32 20 2 0 0 0 0.038285 2 47402 47402;47525 50.855 30.44 1 29486000 73990 8177 49571 50632 85995;85996 85995 787 -0.07362224499638614 VYCQILKQL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))QILKQL_ VYC(1)QILKQL VYC(120)QILKQL 0 1 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8280639648438 2 582.825909 1163.63727 1.268 0.00073901 0.65862 0.00038386 1.9266 0.0011229 582.8264129114569 57.836 0.29618 57.77 57.614 57.91 -0.066036 34 14 3 0 0 0 0.0041763 1 31456 31456 120.45 69.035 1 8027600 73991 7937 49572 50633 85997 85997 776 0.06199218185111022 VYCQILKQL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))QILKQL_ VYC(1)QILKQL VYC(160)QILKQL 0 1 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.8269653320312 2 582.825909 1163.63727 0.90171 0.00052554 0.8841 0.00051528 1.7858 0.0010408 582.8259880842436 63.429 0.91573 57.253 57.019 57.935 -6.1757 108 51 3 0 0 0 1.0251E-06 4 41166 40883;41019;41166;41300 162.95 109.38 1 67914000 73992 7937 49572 50633 85998;85999;86000;86001 86000 776 0.06199218185111022 VYCQILKQL 9 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))QILKQL_ VYC(1)QILKQL VYC(60)QILKQL 0 1 0 nc|ENSG00000169994|Q6PIF6-2|MYO7B;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;ENST00000496841.5_1_2:128377972-128392002:+|nuORF nc|ENSG00000169994|Q6PIF6-2|MYO7B nc|ENSG00000169994|Q6PIF6-2|MYO7B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 582.7906494140625 2 582.825909 1163.63727 1.3985 0.00081511 1.8695 0.0010896 3.268 0.0019047 582.8273635658082 64.399 0.30202 58.223 58.11 58.412 -6.1757 18 16 2 0 0 0 0.030883 1 41706 41706 60.39 31.308 1 6668800 73993 7937 49572 50633 86002 86002 776 0.06199218185111022 VYCSAFRHL 9 Unmodified _VYCSAFRHL_ 0 0 0 ENST00000522550.2_1_7:107789404-107789653:-|nuORF ENST00000522550.2_1_7:107789404-107789653:-|nuORF ENST00000522550.2_1_7:107789404-107789653:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8518676757812 3 365.851655 1094.53313 NaN NaN NaN NaN NaN NaN NaN 17.929 1 17.934 17.434 18.434 0.0055275 0 0 0 0.84369 1 9066 9066 1.1933 0 1 73994 14756 49573 50634 86003 86003 -0.010350638517593325 VYCTVCATHL 10 Unmodified _VYCTVCATHL_ 0 0 0 ENST00000506400.1_1_5:64906824-64920129:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23 ENST00000506400.1_1_5:64906824-64920129:-|nuORF ENST00000506400.1_1_5:64906824-64920129:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2600708007812 2 555.259545 1108.50454 0.84945 0.00047167 0.12757 7.0832E-05 0.97702 0.0005425 555.2597506584234 60.108 0.36019 60.108 59.962 60.322 0 33 15 3 0 0 0 0.2178 1 33520 33520 32.305 6.9062 1 5056400 73995 2980 49574 50635 86004 86004 -0.04537549543215391 VYCTVCATHL 10 2 Carbamidomethyl (C) _VYC(Carbamidomethyl (C))TVC(Carbamidomethyl (C))ATHL_ VYC(1)TVC(1)ATHL VYC(110)TVC(110)ATHL 0 2 0 ENST00000506400.1_1_5:64906824-64920129:-|nuORF;nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23 ENST00000506400.1_1_5:64906824-64920129:-|nuORF ENST00000506400.1_1_5:64906824-64920129:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.2828979492188 2 612.281008 1222.54746 0.47084 0.00028829 -0.67146 -0.00041112 -0.20061 -0.00012283 612.2811393331561 44.269 0.43016 39.417 39.202 39.632 -4.852 80 30 3 0 0 0 0.0020965 2 26893 26893;27028 108 68.04 1 86029000 73996 2980 49574 50636 86005;86006 86005 307;308 -0.05490779485762687 VYDDLKYVW 9 Unmodified _VYDDLKYVW_ 0 0 0 ENSG00000102032|ENST00000393700|RENBP;nc|ENSG00000102032|P51606-3|RENBP;nc|ENSG00000102032|P51606-2|RENBP ENSG00000102032|ENST00000393700|RENBP ENSG00000102032|ENST00000393700|RENBP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8018188476562 2 600.800414 1199.58628 NaN NaN NaN NaN NaN NaN NaN 66.861 1 66.378 65.878 66.878 -0.48323 0 0 0 0.43483 1 36521 36521 18.146 0.011366 1 73997 2011 49575 50637 86007 86007 -0.005534075881087119 VYDELRQCI 9 Carbamidomethyl (C) _VYDELRQC(Carbamidomethyl (C))I_ VYDELRQC(1)I VYDELRQC(140)I 0 1 0 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 ENSG00000153147|ENST00000283131|SMARCA5 MSMS AL20221201_MKP_PDAC_01 4 598.2919311523438 2 598.29243 1194.57031 NaN NaN NaN NaN NaN NaN NaN 48.974 1 43.578 43.078 44.078 -5.3961 0 0 0 0.00038198 1 30547 30547 137.42 89.675 1 73998 6242 49576 50638 86008 86008 619 -0.01919437096648835 VYDEPGHAV 9 Unmodified _VYDEPGHAV_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF;nc|ENSG00000138119|Q9NZM1-8|MYOF;nc|ENSG00000138119|Q9NZM1-7|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.73193359375 2 493.732532 985.45051 -0.24083 -0.0001189 -0.10461 -5.1651E-05 -0.34544 -0.00017056 493.7324086448908 23.465 0.22229 23.465 23.347 23.569 0 16 10 2 0 0 0 0.28047 1 11946 11946 18.135 6.4947 1 636580 73999 5021 49577 50639 86009 86009 -0.042796823789103655 VYDGEEHGRF 10 Unmodified _VYDGEEHGRF_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5158996582031 3 403.515877 1207.5258 0.7887 0.00031825 -1.7078 -0.00068913 -0.91912 -0.00037088 403.5155572738799 42.676 0.38175 42.676 42.488 42.87 0 64 19 5 0 0 0 0.6606 2 23090 23090;23219 3.8763 1.7903 1 19630000 74000 5578 49578 50640 86010;86011 86010 -0.06966124918494643 VYDGEEHGRF 10 Unmodified _VYDGEEHGRF_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.770751953125 2 604.770177 1207.5258 NaN NaN NaN NaN NaN NaN NaN 42.97 1 42.66 42.16 43.16 -0.31039 0 0 0 0.68942 1 22844 22844 17.113 0 1 74001 5578 49578 50640 86012 86012 -0.06966124918494643 VYDGKFAIF 9 Unmodified _VYDGKFAIF_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-2|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.281005859375 2 530.279118 1058.54368 0.45302 0.00024022 1.3228 0.00070147 1.7758 0.00094169 530.2796370935898 67.247 0.3907 67.265 67.064 67.455 0.018036 63 19 4 0 0 0 0.094149 1 36851 36851 34.402 3.7652 1 41608000 74002 901 49579 50641 86013 86013 0.016752420743159746 VYDIAAKF 8 Unmodified _VYDIAAKF_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.7518310546875 2 463.752736 925.490919 0.23884 0.00011076 -0.85069 -0.00039451 -0.61185 -0.00028375 463.75218442179664 52.021 0.24207 52.021 51.886 52.129 0 19 10 2 0 0 0 0.38465 1 28759 28759 46.021 15.796 1 4384200 74003 510 49580 50642 86014 86014 0.025192840115209947 VYDIAAKF 8 Unmodified _VYDIAAKF_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.75244140625 2 463.752736 925.490919 0.34462 0.00015982 0.0034197 1.5859E-06 0.34804 0.0001614 463.7526664286765 52.551 0.27402 52.117 51.985 52.259 -0.43367 36 13 4 0 0 0 0.30525 1 28365 28365 54.774 24.549 1 18007000 74004 510 49580 50642 86015 86015 0.025192840115209947 VYDIAAKF 8 Unmodified _VYDIAAKF_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.7539367675781 2 463.752736 925.490919 0.62672 0.00029064 -1.7131 -0.00079444 -1.0864 -0.0005038 463.7527085908344 52.238 0.18071 52.179 52.067 52.248 -0.058914 14 8 2 0 0 0 0.54555 1 28304 28304 30.637 13.694 1 1445400 74005 510 49580 50642 86016 86016 0.025192840115209947 VYDIAAKF 8 Unmodified _VYDIAAKF_ 0 0 0 ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS ENSG00000018510|ENST00000264167|AGPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7523498535156 2 463.752736 925.490919 0.14352 6.6556E-05 0.3717 0.00017238 0.51522 0.00023893 463.75288907796823 58 0.35452 51.973 51.819 52.173 -6.0275 35 19 2 0 0 0 0.23628 2 37078 37078;37212 64.236 26.085 1 57153000 74006 510 49580 50642 86017;86018 86017 0.025192840115209947 VYDIAQVNL 9 Unmodified _VYDIAQVNL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7794799804688 2 517.779482 1033.54441 0.46723 0.00024192 0.39407 0.00020404 0.8613 0.00044596 517.7791330049246 67.906 0.30443 67.906 67.719 68.024 0 25 14 2 0 0 0 0.10734 1 37856 37856 32.305 15.193 1 1949900 74007 5553 49581 50643 86019 86019 0.028980367233771176 VYDIAQVNL 9 Unmodified _VYDIAQVNL_ 0 0 0 ENSG00000143799|ENST00000366794|PARP1;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF ENSG00000143799|ENST00000366794|PARP1 ENSG00000143799|ENST00000366794|PARP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.779296875 2 517.779482 1033.54441 NaN NaN NaN NaN NaN NaN NaN 68.429 1 67.948 67.448 68.448 -0.48071 0 0 0 0.18753 1 37399 37399 32.305 15.193 1 74008 5553 49581 50643 86020 86020 0.028980367233771176 VYDIRRGGNLM 11 Unmodified _VYDIRRGGNLM_ 0 0 0 REV__ENSG00000107651|ENST00000369075|SEC23IP REV__ENSG00000107651|ENST00000369075|SEC23IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.3408813476562 2 647.340246 1292.66594 NaN NaN NaN NaN NaN NaN NaN 74.031 1 74.031 73.531 74.531 0 0 0 0 0.93933 1 41203 41203 2.9952 0 1 + 74009 18568 49582 50644 86021 86021 0.03131335814259728 VYDITERKSF 10 Unmodified _VYDITERKSF_ 0 0 0 nc|ENSG00000122484|Q8IXW5-2|RPAP2;ENSG00000122484|ENST00000610020|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 nc|ENSG00000122484|Q8IXW5-2|RPAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.8873596191406 3 419.88731 1256.6401 -0.29619 -0.00012437 -0.27083 -0.00011372 -0.56702 -0.00023808 419.8871699021798 34.783 0.15944 34.592 34.518 34.677 -0.19131 14 6 3 0 0 0 0.47059 1 18226 18226 17.863 12.966 1 2139900 74010 3641 49583 50645 86022 86022 0.0220476484360006 VYDITRRDTF 10 Unmodified _VYDITRRDTF_ 0 0 0 ENST00000530071.5_1_8:61496609-61533325:+|nuORF;ENST00000466595.5_1_8:61488829-61533325:+|nuORF;ENST00000429861.5_1_8:61471430-61504606:+|nuORF;nc|ENSG00000104388|P61019-2|RAB2A;ENSG00000104388|ENST00000262646|RAB2A ENST00000530071.5_1_8:61496609-61533325:+|nuORF ENST00000530071.5_1_8:61496609-61533325:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 428.8909301757812 3 429.222693 1284.64625 -0.047766 -2.0502E-05 -0.34733 -0.00014908 -0.3951 -0.00016959 429.22262850541335 37.767 0.18701 37.495 37.375 37.562 -0.27133 15 8 2 0 0 0 0.22797 1 19848 19848 17.863 9.7076 1 6812700 74011 2202 49584 50646 86023 86023 0.015312830751327056 VYDITRRETF 10 Unmodified _VYDITRRETF_ 0 0 0 ENSG00000129472|ENST00000397762|RAB2B;nc|ENSG00000129472|Q8WUD1-2|RAB2B ENSG00000129472|ENST00000397762|RAB2B ENSG00000129472|ENST00000397762|RAB2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.8945922851562 3 433.894577 1298.6619 -0.088255 -3.8293E-05 0.34984 0.00015179 0.26159 0.0001135 433.89466735816865 37.659 0.20574 37.388 37.279 37.485 -0.27133 22 8 3 0 0 0 0.30673 1 19797 19797 27.088 20.465 1 11728000 74012 4138 49585 50647 86024 86024 0.024515695921763836 VYDITRRETF 10 Unmodified _VYDITRRETF_ 0 0 0 ENSG00000129472|ENST00000397762|RAB2B;nc|ENSG00000129472|Q8WUD1-2|RAB2B ENSG00000129472|ENST00000397762|RAB2B ENSG00000129472|ENST00000397762|RAB2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.8941650390625 3 433.894577 1298.6619 0.882 0.00038269 -0.17323 -7.5164E-05 0.70877 0.00030753 433.8944937427835 42.314 0.31984 37.63 37.46 37.779 -4.6846 48 20 3 0 0 0 0.12584 2 25500 25500;25636 42.835 28.617 1 26307000 74013 4138 49585 50647 86025;86026 86025 0.024515695921763836 VYDLLKTNL 9 Unmodified _VYDLLKTNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2776489257812 2 539.810782 1077.60701 0.20977 0.00011324 -0.53571 -0.00028918 -0.32594 -0.00017594 539.8105159615795 61.65 0.20394 61.65 61.548 61.751 0 14 8 2 0 0 0 0.21367 1 34354 34354 4.756 0 1 1001400 74014 8355 49586 50648 86027 86027 0.0713118279156788 VYDLLKTNL 9 Unmodified _VYDLLKTNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8109741210938 2 539.810782 1077.60701 0.45274 0.00024439 0.44462 0.00024001 0.89736 0.0004844 539.8109785104306 62.074 0.36069 61.587 61.407 61.768 -0.48764 49 15 4 0 0 0 0.0047067 2 33771 33771;33876 118.07 43.139 1 38223000 74015 8355 49586 50648 86028;86029 86028 0.0713118279156788 VYDLLKTNL 9 Unmodified _VYDLLKTNL_ 0 0 0 nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 nc|ENSG00000173692|Q99460-2|PSMD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8136596679688 2 539.810782 1077.60701 0.27509 0.0001485 0.54858 0.00029613 0.82367 0.00044463 539.8111132870899 61.703 0.33222 61.67 61.496 61.828 -0.032787 47 16 4 0 0 0 0.0059585 2 33636 33636;33737 114.65 55.97 1 23214000 74016 8355 49586 50648 86030;86031 86030 0.0713118279156788 VYDLSIRGF 9 Unmodified _VYDLSIRGF_ 0 0 0 ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN ENST00000498545.5_1_2:122513336-122522940:+|nuORF ENST00000498545.5_1_2:122513336-122522940:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2883911132812 2 535.287474 1068.5604 0.22066 0.00011812 -0.52664 -0.0002819 -0.30598 -0.00016379 535.2870905210078 65.239 0.47297 64.755 64.425 64.898 -0.48428 58 21 4 0 0 0 0.013041 2 35536 35536;35644 71.922 33.771 1 35820000 74017 10410 49587 50649 86032;86033 86032 0.028857429602794582 VYDLSIRGF 9 Unmodified _VYDLSIRGF_ 0 0 0 ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN ENST00000498545.5_1_2:122513336-122522940:+|nuORF ENST00000498545.5_1_2:122513336-122522940:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.288330078125 2 535.287474 1068.5604 0.69413 0.00037156 -0.41888 -0.00022422 0.27525 0.00014734 535.2873339515324 64.707 0.31651 64.707 64.52 64.836 7.6294E-06 45 15 4 0 0 0 0.032796 1 35399 35399 53.833 29.812 1 52597000 74018 10410 49587 50649 86034 86034 0.028857429602794582 VYDLSIRGF 9 Unmodified _VYDLSIRGF_ 0 0 0 ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN ENST00000498545.5_1_2:122513336-122522940:+|nuORF ENST00000498545.5_1_2:122513336-122522940:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2891235351562 2 535.287474 1068.5604 0.88987 0.00047633 -0.78992 -0.00042284 0.099941 5.3497E-05 535.2868519450349 70.491 0.59019 64.315 63.943 64.533 -6.1757 42 32 2 0 0 0 0.020973 3 46059 45886;46059;46194 62.573 23.608 1 22111000 74019 10410 49587 50649 86035;86036;86037 86036 0.028857429602794582 VYDLSIRGF 9 Unmodified _VYDLSIRGF_ 0 0 0 ENST00000498545.5_1_2:122513336-122522940:+|nuORF;ENST00000490104.5_1_2:122514991-122522940:+|nuORF;ENST00000467324.5_1_2:122513466-122522940:+|nuORF;ENSG00000211460|ENST00000389682|TSN ENST00000498545.5_1_2:122513336-122522940:+|nuORF ENST00000498545.5_1_2:122513336-122522940:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2871704101562 2 535.287474 1068.5604 1.0196 0.00054577 0.77005 0.0004122 1.7896 0.00095797 535.287802324699 71.746 0.998 65.57 65.026 66.024 -6.1757 125 52 3 0 0 0 0.017075 4 46654 46654;46777;46908;47056 66.457 42.436 1 112550000 74020 10410 49587 50649 86038;86039;86040;86041 86038 0.028857429602794582 VYDMDDDEM 9 Unmodified _VYDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.6927490234375 2 566.694097 1131.37364 0.47307 0.00026809 -0.73685 -0.00041757 -0.26378 -0.00014948 566.6937696684392 58.089 0.47537 58.089 57.891 58.366 0 82 17 6 0 0 0 0.54444 1 32290 32290 4.756 2.4533 1 16747000 74021 3192 49588 50650 86042 86042 -0.1867902977257927 VYDMDDDEM 9 Unmodified _VYDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.693603515625 2 566.694097 1131.37364 0.94733 0.00053685 -0.73794 -0.00041819 0.20939 0.00011866 566.6935372019747 66.211 0.45544 60.035 59.806 60.261 -6.1757 69 25 4 0 0 0 0.58466 1 42993 42993 2.3027 0 1 39006000 74022 3192 49588 50650 86043 86043 -0.1867902977257927 VYDPLFSQL 9 Unmodified _VYDPLFSQL_ 0 0 0 ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.2817993164062 2 541.281857 1080.54916 0.31003 0.00016781 0.77717 0.00042067 1.0872 0.00058848 541.2821737711604 86.216 0.41277 85.713 85.493 85.906 -0.50318 43 16 3 0 0 0 0.076472 2 47214 47115;47214 49.933 19.839 1 5154800 74023 1755 49589 50651 86044;86045 86045 0.012109208661286175 VYDPLFSQL 9 Unmodified _VYDPLFSQL_ 0 0 0 ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD ENSG00000100104|ENST00000215917|SRRD MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.7838134765625 2 541.281857 1080.54916 1.0949 0.00059265 1.4037 0.00075982 2.4987 0.0013525 541.2826682056821 94.393 0.7213 88.217 87.788 88.509 -6.1757 102 41 3 0 0 0 0.076472 3 62291 62291;62415;62541 49.933 21.446 1 28737000 74024 1755 49589 50651 86046;86047;86048 86046 0.012109208661286175 VYDPLSKRW 9 Unmodified _VYDPLSKRW_ 0 0 0 nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP nc|ENSG00000197429|Q9Y573-2|IPP nc|ENSG00000197429|Q9Y573-2|IPP MSMS AL20221201_MKP_PDAC_01 4 388.5449829101562 3 388.545108 1162.61349 NaN NaN NaN NaN NaN NaN NaN 49.684 1 44.145 43.645 44.645 -5.5391 0 0 0 0.089774 1 31065 31065 46.022 30.284 1 74025 9953 49590 50652 86049 86049 0.03869120742933774 VYDPSLKTLL 10 Unmodified _VYDPSLKTLL_ 0 0 0 ENSG00000057935|ENST00000405094|MTA3;nc|ENSG00000057935|Q9BTC8-2|MTA3 ENSG00000057935|ENST00000405094|MTA3 ENSG00000057935|ENST00000405094|MTA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8320922851562 2 574.831714 1147.64888 0.25089 0.00014422 1.0424 0.00059922 1.2933 0.00074344 574.8323244660281 65.633 0.24525 65.148 65 65.246 -0.48428 29 10 4 0 0 0 0.16005 1 35803 35803 38.615 14.594 1 4057300 74026 798 49591 50653 86050 86050 0.0809573848009677 VYDQETTF 8 Unmodified _VYDQETTF_ 0 0 0 REV__ENSG00000165379|ENST00000298119|LRFN5 REV__ENSG00000165379|ENST00000298119|LRFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7248840332031 2 501.724372 1001.43419 0.34475 0.00017297 0.67778 0.00034006 1.0225 0.00051303 501.7245654850494 40.078 0.15858 40.078 39.952 40.11 0 13 7 2 0 0 0 0.71616 1 21533 21533 15.768 2.2603 1 1590100 + 74027 22007 49592 50654 86051 86051 -0.06646808335676724 VYDRYCSAL 9 Unmodified _VYDRYCSAL_ 0 0 0 REV__nc|ENSG00000077800|O75344-3|FKBP6 REV__nc|ENSG00000077800|O75344-3|FKBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2538452148438 2 545.255317 1088.49608 0.60654 0.00033072 -0.59479 -0.00032431 0.011751 6.4072E-06 545.2544461277082 81.051 0.22536 80.559 80.356 80.582 -0.49247 17 9 2 0 0 0 0.48152 1 44372 44372 8.5933 2.2392 1 1605800 + 74028 17618 49593 50655 86052 86052 -0.04462780188191573 VYDTGPLC 8 Unmodified _VYDTGPLC_ 0 0 0 REV__nc|ENSG00000283706|Q9UI38|PRSS50 REV__nc|ENSG00000283706|Q9UI38|PRSS50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.3917236328125 1 867.391681 866.384405 0.31603 0.00027412 -0.61784 -0.00053591 -0.30182 -0.00026179 867.3913918612552 59.431 0.33611 59.431 59.241 59.577 0 37 14 4 0 0 0 0.32412 1 33169 33169 52.693 3.0242 1 7728600 + 74029 30010 49594 50656 86053 86053 -0.054132145453195335 VYDTLHEEW 9 Unmodified _VYDTLHEEW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.2702026367188 2 596.269478 1190.5244 0.073999 4.4123E-05 0.19515 0.00011636 0.26915 0.00016049 596.2697107912926 48.111 0.29183 48.111 47.959 48.251 0 33 14 3 0 0 0 0.026094 2 26339 26339;26453 57.471 23.369 1 9739400 74030 8124 49595 50657 86054;86055 86054 -0.06323759007250374 VYDTLHEEW 9 Unmodified _VYDTLHEEW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.77294921875 2 596.269478 1190.5244 0.48165 0.00028719 2.4676 0.0014714 2.9492 0.0017585 596.7729512888493 48.45 0.23639 48.078 47.925 48.162 -0.37172 26 11 3 0 0 0 0.32871 1 25981 25981 15.847 3.3156 1 3861300 74031 8124 49595 50657 86056 86056 -0.06323759007250374 VYDTLHEEW 9 Unmodified _VYDTLHEEW_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2698364257812 2 596.269478 1190.5244 0.72237 0.00043073 -0.070215 -4.1867E-05 0.65216 0.00038886 596.2692891518324 54.367 0.40198 48.502 48.266 48.668 -5.8653 60 24 3 0 0 0 0.0095811 2 34374 34374;34518 81.613 33.267 1 59743000 74032 8124 49595 50657 86057;86058 86057 -0.06323759007250374 VYDTNPAKF 9 Unmodified _VYDTNPAKF_ 0 0 0 ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7646484375 2 527.763832 1053.51311 -0.42895 -0.00022639 1.0912 0.00057589 0.66223 0.0003495 527.7643570571413 35.15 0.28708 34.927 34.736 35.023 -0.2224 25 12 3 0 0 0 0.094149 1 18392 18392 34.402 14.963 1 2995200 74033 5155 49596 50658 86059 86059 -0.011505363107289668 VYDTNPAKF 9 Unmodified _VYDTNPAKF_ 0 0 0 ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP ENSG00000139433|ENST00000318348|GLTP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 527.2492065429688 2 527.763832 1053.51311 0.28075 0.00014817 1.3858 0.00073136 1.6665 0.00087953 527.7647750740427 39.872 0.19817 35.342 35.231 35.429 -4.5294 20 12 2 0 0 0 0.19496 1 23664 23664 13.906 5.3128 1 29397000 74034 5155 49596 50658 86060 86060 -0.011505363107289668 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.86669921875 3 385.865958 1154.57605 0.35242 0.00013599 -0.38825 -0.00014981 -0.035829 -1.3825E-05 385.8658111780164 48.611 0.40694 48.239 48.039 48.446 -0.37172 66 21 4 0 0 0 0.028475 2 26037 26037;26139 51.415 32.694 1 146430000 74035 9370 49597 50659 86061;86062 86061 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7959594726562 2 578.295299 1154.57605 0.40227 0.00023263 -0.43481 -0.00025145 -0.032539 -1.8817E-05 578.2948285653664 48.606 0.28777 48.234 48.081 48.369 -0.37172 36 15 3 0 0 0 0.07087 2 26059 26059;26167 39.95 23.801 1 28745000 74036 9370 49597 50659 86063;86064 86063 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.2968139648438 2 578.295299 1154.57605 0.67634 0.00039113 -0.44276 -0.00025604 0.23359 0.00013508 578.2948694934322 48.316 0.49321 48.277 47.988 48.481 -0.038643 77 24 4 0 0 0 0.013041 3 25991 25974;25991;26093 71.922 39.137 1 167840000 74037 9370 49597 50659 86065;86066;86067 86066 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8657836914062 3 385.865958 1154.57605 0.31201 0.0001204 -0.56646 -0.00021858 -0.25445 -9.8183E-05 385.865736937193 48.316 0.78584 48.277 48.047 48.833 -0.038643 142 39 6 0 0 0 0.12424 2 26058 26058;26177 41.956 25.806 1 1047199999.9999999 74038 9370 49597 50659 86068;86069 86068 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8664245605469 3 385.865958 1154.57605 1.5309 0.00059072 -0.30058 -0.00011598 1.2303 0.00047474 385.86576595056925 53.611 0.8769 47.806 47.467 48.344 -5.8042 201 54 5 0 0 0 0.039985 4 34027 33750;33887;34027;34170 38.615 21.887 1 1397600000 74039 9370 49597 50659 86070;86071;86072;86073 86072 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2947387695312 2 578.295299 1154.57605 1.1541 0.0006674 -0.58184 -0.00033648 0.57224 0.00033093 578.2949429752397 53.565 0.70222 47.761 47.498 48.2 -5.8042 146 44 5 0 0 0 0.0082661 3 33763 33763;33898;34028 92.491 44.743 1 462470000 74040 9370 49597 50659 86074;86075;86076 86074 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8667907714844 3 385.865958 1154.57605 1.3646 0.00052654 0.11654 4.4967E-05 1.4811 0.0005715 385.8659698782718 54.974 1.7262 49.109 48.283 50.009 -5.8653 160 106 3 0 0 0 0.05447 7 35030 34309;34447;34615;34753;34884;35030;35583 45.74 33.8 1 33334000 74041 9370 49597 50659 86077;86078;86079;86080;86081;86082;86083 86082 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2959594726562 2 578.295299 1154.57605 0.8555 0.00049473 -0.31267 -0.00018082 0.54283 0.00031392 578.2953980493171 54.679 0.7658 48.813 48.23 48.996 -5.8653 56 46 2 0 0 0 0.011968 2 34692 34692;34837 74.929 48.045 1 14337000 74042 9370 49597 50659 86084;86085 86084 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.8658752441406 3 385.865958 1154.57605 1.0598 0.00040894 0.48664 0.00018778 1.5464 0.00059672 385.8660235654836 56.535 0.91195 50.559 50.32 51.232 -5.9769 108 53 3 0 0 0 0.011968 4 36464 35976;36111;36241;36464 59.368 35.567 1 48891000 74043 9370 49597 50659 86086;86087;86088;86089 86089 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.867431640625 3 385.865958 1154.57605 1.6631 0.00064172 0.11872 4.5808E-05 1.7818 0.00068753 385.86607354133827 59.108 0.47744 53.034 52.817 53.295 -6.0745 42 26 3 0 0 0 0.10734 2 38027 37866;38027 41.956 25.806 1 29215000 74044 9370 49597 50659 86090;86091 86091 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MSMS AL20221201_MKP_PDAC_01 4 578.2962646484375 2 578.295299 1154.57605 NaN NaN NaN NaN NaN NaN NaN 54.238 1 48.372 47.872 48.872 -5.8653 0 0 0 0.038824 1 34376 34376 62.573 32.348 1 74045 9370 49597 50659 86092 86092 0.004940294773177811 VYDTVFKHF 9 Unmodified _VYDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.2506713867188 2 578.295299 1154.57605 1.0692 0.00061834 0.78832 0.00045588 1.8576 0.0010742 578.2957606945114 54.942 0.27175 49.077 48.977 49.249 -5.8653 23 16 2 0 0 0 0.062282 1 34971 34971 49.933 15.831 1 12885000 74046 9370 49597 50659 86093 86093 0.004940294773177811 VYDTVHEEW 9 Unmodified _VYDTVHEEW_ 0 0 0 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 ENSG00000183655|ENST00000337975|KLHL25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2625122070312 2 589.261653 1176.50875 -0.52121 -0.00030713 0.99163 0.00058433 0.47042 0.0002772 589.2624157883382 41.181 0.29897 41.181 41.065 41.364 0 25 14 2 0 0 0 0.070838 1 22185 22185 39.957 7.6518 1 4374800 74047 9174 49598 50660 86094 86094 -0.07244045524294052 VYDVAMKL 8 Oxidation (M) _VYDVAM(Oxidation (M))KL_ VYDVAM(1)KL VYDVAM(52)KL 0 0 1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7516479492188 2 477.751879 953.489204 0.087744 4.192E-05 -0.87613 -0.00041857 -0.78839 -0.00037665 477.7516651113515 39.247 0.26767 38.96 38.812 39.08 -0.28687 29 12 3 0 0 0 0.32798 1 20683 20683 52.268 19.963 1 12222000 74048 8482 49599 50661 86095 86095 1439 0.010599069312547726 VYDVAMKL 8 Oxidation (M) _VYDVAM(Oxidation (M))KL_ VYDVAM(1)KL VYDVAM(64)KL 0 0 1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7525329589844 2 477.751879 953.489204 0.57481 0.00027462 0.2634 0.00012584 0.83822 0.00040046 477.75205673293493 44.131 0.43338 39.279 39.084 39.517 -4.852 67 30 3 0 0 0 0.23628 2 26958 26823;26958 64.236 19.829 1 42137000 74049 8482 49599 50661 86096;86097 86097 1439 0.010599069312547726 VYDVAMKL 8 Unmodified _VYDVAMKL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.7549438476562 2 469.754421 937.494289 0.35798 0.00016816 0.029512 1.3863E-05 0.38749 0.00018203 469.75447359399675 52.909 0.23577 52.457 52.338 52.574 -0.45173 27 11 3 0 0 0 0.46677 1 28594 28594 37.974 3.8716 1 3564400 74050 8482 49599 50662 86098 86098 0.023042107938636036 VYDVAMKL 8 Unmodified _VYDVAMKL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7549743652344 2 469.754421 937.494289 1.2979 0.00060972 1.5223 0.00071513 2.8203 0.0013248 469.755161142361 58.487 0.55716 52.412 52.145 52.702 -6.0745 71 30 3 0 0 0 0.19688 3 37347 37347;37467;37598 71.134 29.039 1 82782000 74051 8482 49599 50662 86099;86100;86101 86099 0.023042107938636036 VYDVAMKL 8 Unmodified _VYDVAMKL_ 0 0 0 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 ENSG00000175073|ENST00000310421|VCPIP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 469.754421 937.494289 0.26378 0.00012391 0.95851 0.00045026 1.2223 0.00057418 469.7549679132434 52.404 0.13441 52.404 52.332 52.467 0 -0.020576 6.0226E-05 NaN 71.134 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 453620 74052 8482 49599 50662 0.023042107938636036 VYDVTNEESF 10 Unmodified _VYDVTNEESF_ 0 0 0 nc|ENSG00000100360|Q9BW83-2|IFT27;ENSG00000100360|ENST00000433985|IFT27;ENST00000471809.5_1_22:37159849-37172159:-|nuORF nc|ENSG00000100360|Q9BW83-2|IFT27 nc|ENSG00000100360|Q9BW83-2|IFT27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.764404296875 2 601.764226 1201.5139 0.45961 0.00027658 0.82716 0.00049776 1.2868 0.00077434 601.7645376271425 47.755 0.25252 47.755 47.644 47.897 0 28 11 3 0 0 0 0.1942 1 26159 26159 34.402 0 1 4495800 74053 1806 49600 50663 86102 86102 -0.07879786452349435 VYDVTPPEL 9 Unmodified _VYDVTPPEL_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.76513671875 2 516.76604 1031.51753 0.25323 0.00013086 -0.67314 -0.00034785 -0.41991 -0.000217 516.7659569145948 62.732 0.34423 62.732 62.551 62.895 0 38 14 3 0 0 0 0.0095811 2 34963 34963;35072 81.613 45.569 1 3563000 74054 3096 49601 50664 86103;86104 86103 0.0030292811218259885 VYDVTPPEL 9 Unmodified _VYDVTPPEL_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.560913085938 1 1032.5248 1031.51753 -0.3929 -0.00040567 -0.95331 -0.00098431 -1.3462 -0.00139 1032.5214952361187 62.716 0.16728 62.716 62.633 62.8 0 10 6 2 0 0 0 0.18118 1 34941 34941 19.257 8.4331 1 779220 74055 3096 49601 50664 86105 86105 0.0030292811218259885 VYDVTPPEL 9 Unmodified _VYDVTPPEL_ 0 0 0 nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4;ENST00000478311.1_1_2:27587269-27587801:-|nuORF nc|ENSG00000115211|Q9UI10-3|EIF2B4 nc|ENSG00000115211|Q9UI10-3|EIF2B4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7379760742188 2 516.76604 1031.51753 0.25848 0.00013357 -0.88356 -0.0004566 -0.62508 -0.00032302 516.7659997206763 63.304 0.28305 62.818 62.665 62.948 -0.48617 18 12 2 0 0 0 0.19891 1 34478 34478 11.64 2.2929 1 868830 74056 3096 49601 50664 86106 86106 0.0030292811218259885 VYDVTRRDTF 10 Unmodified _VYDVTRRDTF_ 0 0 0 ENST00000465772.5_1_10:27793310-27827017:+|nuORF;ENSG00000099246|ENST00000356940|RAB18;nc|ENSG00000099246|Q9NP72-2|RAB18 ENST00000465772.5_1_10:27793310-27827017:+|nuORF ENST00000465772.5_1_10:27793310-27827017:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.8854675292969 3 424.55081 1270.6306 -0.085392 -3.6253E-05 0.62515 0.00026541 0.53975 0.00022915 424.55104933164296 32.239 0.18996 32.11 31.986 32.176 -0.12915 14 6 3 0 0 0 0.5933 1 16787 16787 7.0371 5.582 1 1403500 74057 1688 49602 50665 86107 86107 0.006109965580662902 VYDVVELKF 9 Unmodified _VYDVVELKF_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.3055419921875 2 556.305332 1110.59611 0.32297 0.00017967 -0.66788 -0.00037154 -0.3449 -0.00019187 556.3049300520493 71.986 0.27487 71.986 71.84 72.115 0 33 12 3 0 0 0 0.085319 1 40046 40046 36.506 21.668 1 2491400 74058 6017 49603 50666 86108 86108 0.0452378041729844 VYDVVELKF 9 Unmodified _VYDVVELKF_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3063354492188 2 556.305332 1110.59611 0.81202 0.00045173 -0.47157 -0.00026234 0.34045 0.00018939 556.3049786359916 72.382 0.60912 71.906 71.709 72.318 -0.47609 75 28 4 0 0 0 0.01958 2 39552 39552;39647 63.961 42.424 1 33813000 74059 6017 49603 50666 86109;86110 86109 0.0452378041729844 VYDYDEMWG 9 Unmodified _VYDYDEMWG_ 0 0 0 REV__nc|ENSG00000050820|P56945-5|BCAR1 REV__nc|ENSG00000050820|P56945-5|BCAR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.2165832519531 3 393.155069 1176.44338 NaN NaN NaN NaN NaN NaN NaN 62.947 1 62.947 62.447 63.447 0 0 0 0 0.85359 1 35113 35113 1.0715 0.61312 1 + 74060 17263 49604 50667 86111 86111 -0.13778783041652787 VYDYFRAVL 9 Unmodified _VYDYFRAVL_ 0 0 0 ENSG00000168522|ENST00000302279|FNTA;ENST00000524546.5_1_8:42911603-42924800:+|nuORF;ENST00000526755.5_1_8:42911676-42932640:+|nuORF ENSG00000168522|ENST00000302279|FNTA ENSG00000168522|ENST00000302279|FNTA MSMS AL20221201_MKP_PDAC_01 4 573.3032836914062 2 573.303124 1144.5917 NaN NaN NaN NaN NaN NaN NaN 87.433 1 81.257 80.757 81.757 -6.1757 0 0 0 0.61214 1 57656 57656 12.241 2.8575 1 74061 7774 49605 50668 86112 86112 0.025183159943708233 VYEAIFAML 9 Oxidation (M) _VYEAIFAM(Oxidation (M))L_ VYEAIFAM(1)L VYEAIFAM(51)L 0 0 1 ENSG00000186951|ENST00000407236|PPARA ENSG00000186951|ENST00000407236|PPARA ENSG00000186951|ENST00000407236|PPARA MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7731323242188 2 536.772811 1071.53107 0.95534 0.0005128 -1.2517 -0.00067189 -0.29638 -0.00015909 536.7729846563719 94.807 0.70401 88.632 88.083 88.787 -6.1757 51 40 2 0 0 0 0.038285 2 62726 62726;62854 50.855 29.108 1 9071000 74062 9525 49606 50669 86113;86114 86113 1561 -0.0018353738023506594 VYEAIFAML 9 Oxidation (M) _VYEAIFAM(Oxidation (M))L_ VYEAIFAM(1)L VYEAIFAM(51)L 0 0 1 ENSG00000186951|ENST00000407236|PPARA ENSG00000186951|ENST00000407236|PPARA ENSG00000186951|ENST00000407236|PPARA MSMS AL20221201_MKP_PDAC_01 4 536.773681640625 2 536.772811 1071.53107 NaN NaN NaN NaN NaN NaN NaN 94.498 1 88.322 87.822 88.822 -6.1757 0 0 0 0.071041 1 62593 62593 50.855 27.707 1 74063 9525 49606 50669 86115 86115 1561 -0.0018353738023506594 VYEAMVPLF 9 Oxidation (M) _VYEAM(Oxidation (M))VPLF_ VYEAM(1)VPLF VYEAM(54)VPLF 0 0 1 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.773193359375 2 542.772811 1083.53107 0.76 0.00041251 -0.78914 -0.00042832 -0.029139 -1.5816E-05 542.7722682872388 79.955 0.32877 79.465 79.312 79.64 -0.48932 38 12 4 0 0 0 0.03327 1 43796 43796 53.576 15.424 1 6102800 74064 5002 49607 50670 86116 86116 912 -0.007355373802511167 VYEASHCTF 9 Unmodified _VYEASHCTF_ 0 0 0 REV__HDAC6|p.L537F|1|0.24|ENSG00000094631|chrX:48816256-48816256|C/T|missense_variant REV__HDAC6|p.L537F|1|0.24|ENSG00000094631|chrX:48816256-48816256|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7276000976562 2 528.726392 1055.43823 NaN NaN NaN NaN NaN NaN NaN 33.094 1 33.094 32.594 33.594 0 0 0 0 0.7453 1 17328 17328 7.9102 2.1497 1 + 74065 29359 49608 50671 86117 86117 -0.08727042113628158 VYEDLRYKL 9 Unmodified _VYEDLRYKL_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MSMS AL20221201_MKP_PDAC_01 4 400.5560302734375 3 400.220401 1197.63937 NaN NaN NaN NaN NaN NaN NaN 49.063 1 43.667 43.167 44.167 -5.3961 0 0 0 0.090869 1 30616 30616 45.74 19.742 1 74066 8480 49609 50672 86118 86118 0.04845970194560323 VYEDYNCTL 9 Carbamidomethyl (C) _VYEDYNC(Carbamidomethyl (C))TL_ VYEDYNC(1)TL VYEDYNC(48)TL 0 1 0 nc|ENSG00000041880|Q9Y6F1-2|PARP3;ENSG00000041880|ENST00000398755|PARP3;ENST00000470601.5_1_3:51977371-51978822:+|nuORF nc|ENSG00000041880|Q9Y6F1-2|PARP3 nc|ENSG00000041880|Q9Y6F1-2|PARP3 MSMS AL20221201_MKP_PDAC_01 4 588.7488403320312 2 588.747521 1175.48049 NaN NaN NaN NaN NaN NaN NaN 50.4 1 44.861 44.361 45.361 -5.5391 0 0 0 0.080768 1 31611 31611 48.346 34.44 1 74067 657 49610 50673 86119 86119 45 -0.1002311149588877 VYEEQINIL 9 Unmodified _VYEEQINIL_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8002319335938 2 560.797872 1119.58119 0.4981 0.00027933 0.88584 0.00049678 1.3839 0.00077611 560.7984815245961 68.385 0.47434 68.385 68.204 68.679 0 39 21 3 0 0 0 0.41742 1 38184 38184 11.64 3.047 1 1385800 74068 7598 49611 50674 86120 86120 0.02618288549274439 VYEGWFFVHL 10 Unmodified _VYEGWFFVHL_ 0 0 0 REV__nc|ENSG00000189067|Q99732-2|LITAF REV__nc|ENSG00000189067|Q99732-2|LITAF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8858947753906 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 63.854 1 63.844 63.344 64.344 -0.010532 0 0 0 0.99897 1 34939 34939 0.77653 0 1 + 74069 29869 49612 50675 86121 86121 -0.002097085972536661 VYEHEHIY 8 Unmodified _VYEHEHIY_ 0 0 0 REV__ENSG00000100749|ENST00000216639|VRK1 REV__ENSG00000100749|ENST00000216639|VRK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2575073242188 2 545.253631 1088.49271 1.0323 0.00056289 2.5318 0.0013805 3.5642 0.0019434 545.2534483867677 88.439 0.38065 82.264 82.096 82.477 -6.1757 48 20 3 0 0 0 0.76859 1 58383 58383 11.114 0.93107 1 17435000 + 74070 18106 49613 50676 86122 86122 -0.047997069705161266 VYEHNHVSL 9 Unmodified _VYEHNHVSL_ 0 0 0 ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.5172729492188 3 366.517329 1096.53016 -0.37104 -0.00013599 -0.53271 -0.00019525 -0.90375 -0.00033124 366.5170097086235 24.265 0.20983 24.265 24.138 24.348 0 34 14 3 0 0 0 0.34999 1 12360 12360 14.405 4.2548 1 3394400 74071 5026 49614 50677 86123 86123 -0.01424615704900134 VYEISRLNV 9 Unmodified _VYEISRLNV_ 0 0 0 REV__ENST00000314423.11_1_16:69166475-69170710:+|nuORF REV__ENST00000314423.11_1_16:69166475-69170710:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8062133789062 2 546.806031 1091.59751 0.9801 0.00053593 -0.15409 -8.4255E-05 0.82602 0.00045167 546.8058911637956 61.334 0.60702 55.187 54.901 55.508 -6.1478 67 30 3 0 0 0 0.25681 1 39367 39367 19.257 4.0085 1 221200000 + 74072 25447 49615 50678 86124 86124 0.05537414506034111 VYEKVLVACY 10 Unmodified _VYEKVLVACY_ 0 0 0 REV__nc|ENSG00000065675|Q04759-2|PRKCQ REV__nc|ENSG00000065675|Q04759-2|PRKCQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.8104858398438 2 593.812467 1185.61038 0.47585 0.00028256 -0.6824 -0.00040522 -0.20655 -0.00012265 593.8121926762246 63.099 0.22741 62.612 62.501 62.729 -0.48617 26 10 3 0 0 0 0.13391 1 34389 34389 41.84 7.4379 1 6865500 + 74073 17385 49616 50679 86125 86125 0.025001095739298762 VYENEIHAL 9 Unmodified _VYENEIHAL_ 0 0 0 HADH-ZP2|1|fusion;nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2 HADH-ZP2|1|fusion HADH-ZP2|1|fusion MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7490844726562 2 544.274564 1086.53457 NaN NaN NaN NaN NaN NaN NaN 47.158 1 47.158 46.658 47.658 0 0 0 0 0.82015 1 25811 25811 5.2307 0.47466 1 74074 2124 49617 50680 86126 86126 -0.005231512820046191 VYENLNQQL 9 Unmodified _VYENLNQQL_ 0 0 0 REV__ENSG00000164151|ENST00000296564|ICE1 REV__ENSG00000164151|ENST00000296564|ICE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7870483398438 2 560.785296 1119.55604 0.68171 0.00038229 0.068589 3.8464E-05 0.7503 0.00042076 560.7855006228968 73.581 0.46704 73.625 73.314 73.781 0.043983 46 20 3 0 0 0 0.015445 1 40512 40512 68.081 5.508 1 10074000 + 74075 21878 49618 50681 86127 86127 0.0010423374669699115 VYENLNQQL 9 Unmodified _VYENLNQQL_ 0 0 0 REV__ENSG00000164151|ENST00000296564|ICE1 REV__ENSG00000164151|ENST00000296564|ICE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 560.785296 1119.55604 0.68171 0.00038229 0.068589 3.8464E-05 0.7503 0.00042076 560.7855006228968 73.581 0.46704 73.625 73.314 73.781 0.043983 0 0 NaN 68.081 46 20 3 NaN NaN NaN NaN 0 NaN NaN 0 10074000 + 74076 21878 49618 50681 0.0010423374669699115 VYENTGKLQI 10 Unmodified _VYENTGKLQI_ 0 0 0 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 REV__nc|ENSG00000196159|Q6V0I7-3|FAT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.81298828125 2 582.816596 1163.61864 0.69889 0.00040732 -3.6495 -0.002127 -2.9506 -0.0017196 582.8155082761633 63.204 0.10671 57.029 56.949 57.056 -6.1757 7 5 2 0 0 0 0.11824 1 40850 40850 43.772 7.7282 1 19409000 + 74077 23799 49619 50682 86128 86128 0.043373798149104914 VYENVQMY 8 Unmodified _VYENVQMY_ 0 0 0 ENST00000394205.7_2_4:141302422-141302503:+|nuORF ENST00000394205.7_2_4:141302422-141302503:+|nuORF ENST00000394205.7_2_4:141302422-141302503:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2369384765625 2 523.236593 1044.45863 0.06661 3.4853E-05 1.3917 0.00072817 1.4583 0.00076303 523.2369418689095 66.382 0.32352 65.898 65.807 66.13 -0.48323 36 15 3 0 0 0 0.80676 1 36354 36354 2.5775 0.27475 1 6380100 74078 12729 49620 50683 86129 86129 -0.061818714537821506 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2780151367188 2 554.277106 1106.53966 0.3559 0.00019727 0.5359 0.00029704 0.89181 0.00049431 554.2774532901378 55.746 0.35263 55.268 55.069 55.422 -0.47798 50 16 4 0 0 0 0.05447 1 30202 30202 43.858 23.405 1 30091000 74079 7265 49621 50684 86130 86130 -0.009348474193984657 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.2789306640625 2 554.277106 1106.53966 1.114 0.00061747 -0.32756 -0.00018156 0.78645 0.00043591 554.276725399823 61.354 0.49447 55.207 54.937 55.432 -6.1478 55 24 3 0 0 0 0.008678 2 39427 39427;39562 88.904 42.883 1 131020000 74080 7265 49621 50684 86131;86132 86131 -0.009348474193984657 VYENVSHFL 9 Unmodified _VYENVSHFL_ 0 0 0 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 ENSG00000164933|ENST00000297578|SLC25A32 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.277106 1106.53966 0.13732 7.6113E-05 -0.24262 -0.00013448 -0.1053 -5.8367E-05 554.277126672667 55.396 0.25785 55.327 55.158 55.415 -0.068737 0.060036 -0.00034718 NaN 88.904 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3150000 74081 7265 49621 50684 -0.009348474193984657 VYEPVSYHV 9 Unmodified _VYEPVSYHV_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7715454101562 2 546.771657 1091.52876 1.0112 0.00055291 -2.0214 -0.0011053 -1.0102 -0.00055234 546.7705231880076 42.674 0.17133 42.674 42.565 42.737 0 14 8 2 0 0 0 0.087258 1 23131 23131 36.044 17.909 1 4339100 74082 1622 49622 50685 86133 86133 -0.013342497936719155 VYERELQTF 9 Unmodified _VYERELQTF_ 0 0 0 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.803955078125 2 592.800946 1183.58734 0.75814 0.00044943 -0.020748 -1.2299E-05 0.7374 0.00043713 592.8008400994989 42.847 0.34144 42.847 42.644 42.985 0 63 17 5 0 0 0 0.0088735 2 23147 23147;23264 114.2 70.343 1 103510000 74083 10225 49623 50686 86134;86135 86134 0.0028880678080440703 VYERELQTF 9 Unmodified _VYERELQTF_ 0 0 0 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.80029296875 2 592.800946 1183.58734 0.20942 0.00012414 -0.43984 -0.00026074 -0.23042 -0.00013659 592.8005559137241 43.082 0.27496 42.772 42.61 42.885 -0.31039 26 12 3 0 0 0 0.0086493 1 22901 22901 110.55 54.376 1 14473000 74084 10225 49623 50686 86136 86136 0.0028880678080440703 VYERELQTF 9 Unmodified _VYERELQTF_ 0 0 0 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 ENSG00000203791|ENST00000368836|EEF1AKMT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.80224609375 2 592.800946 1183.58734 0.7995 0.00047394 -0.014972 -8.8753E-06 0.78452 0.00046507 592.8008173026672 48.439 0.47675 43.205 42.973 43.449 -5.2339 91 28 4 0 0 0 0.0033237 3 30042 30042;30167;30299 137.42 100.92 1 224470000 74085 10225 49623 50686 86137;86138;86139 86137 0.0028880678080440703 VYESAINWI 9 Unmodified _VYESAINWI_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.7794189453125 2 547.779482 1093.54441 NaN NaN NaN NaN NaN NaN NaN 80.92 1 80.427 79.927 80.927 -0.49247 0 0 0 0.70111 1 44312 44312 9.3474 2.0582 1 74086 8124 49624 50687 86140 86140 0.0013803672336507589 VYESIYNRI 9 Unmodified _VYESIYNRI_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8050537109375 2 578.803488 1155.59242 0.73028 0.00042269 0.75588 0.00043751 1.4862 0.00086019 578.8037222595889 47.149 0.17507 46.805 46.713 46.888 -0.34328 14 8 2 0 0 0 0.018301 1 25267 25267 65.235 32.93 1 4738900 74087 2693 49625 50688 86141 86141 0.020851106434292888 VYESIYNRI 9 Unmodified _VYESIYNRI_ 0 0 0 nc|ENSG00000110046|Q2TAZ0-3|ATG2A;ENSG00000110046|ENST00000377264|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A nc|ENSG00000110046|Q2TAZ0-3|ATG2A MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 578.803488 1155.59242 0.90193 0.00052204 -0.56271 -0.0003257 0.33923 0.00019635 578.8030736175625 52.598 0.16451 46.864 46.745 46.91 -5.7345 0.029198 -0.00079146 NaN 65.235 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 28264000 74088 2693 49625 50688 0.020851106434292888 VYETTQHFI 9 Unmodified _VYETTQHFI_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2830810546875 2 569.282389 1136.55022 0.93773 0.00053383 -4.2628 -0.0024267 -3.325 -0.0018929 569.7793290701094 42.889 0.20742 42.889 42.798 43.006 0 15 10 2 0 0 0 0.08691 1 23280 23280 36.127 14.38 1 2928600 74089 1131 49626 50689 86142 86142 -0.012588647649408813 VYETTQHFI 9 Unmodified _VYETTQHFI_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 569.2472534179688 2 569.282389 1136.55022 0.90674 0.00051619 -0.37974 -0.00021618 0.52701 0.00030002 569.2825802273616 48.272 0.36726 43.038 42.834 43.201 -5.2339 29 21 2 0 0 0 0.16418 1 29945 29945 25.399 4.9457 1 14245000 74090 1131 49626 50689 86143 86143 -0.012588647649408813 VYETTQHFI 9 Unmodified _VYETTQHFI_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 569.282389 1136.55022 0.33038 0.00018808 -1.9098 -0.0010872 -1.5794 -0.00089912 569.2813162084706 43.114 0.10092 42.804 42.741 42.842 -0.31039 -0.10612 -0.0011427 NaN 36.127 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2431700 74091 1131 49626 50689 -0.012588647649408813 VYEWLPSFL 9 Unmodified _VYEWLPSFL_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 576.8099365234375 2 577.30005 1152.58555 0.77232 0.00044586 -3.3094 -0.0019105 -2.5371 -0.0014647 577.7984494761071 101.67 0.1292 95.491 95.395 95.524 -6.1757 11 6 3 0 0 0 0.18118 1 68171 68171 18.135 7.3111 1 10193000 74092 5216 49627 50690 86144 86144 0.015357977628582375 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.304931640625 2 602.305864 1202.59717 -0.64644 -0.00038935 0.13891 8.3669E-05 -0.50753 -0.00030569 602.305867307659 55.966 0.21212 55.966 55.881 56.093 0 25 11 3 0 0 0 0.010301 1 31112 31112 79.596 48.96 1 7969600 74093 4634 49628 50691 86145 86145 0.003979947861580513 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3037109375 2 602.305864 1202.59717 -0.67198 -0.00040474 0.067665 4.0755E-05 -0.60432 -0.00036398 602.3056236248208 56.523 0.32303 56.037 55.863 56.186 -0.48554 75 26 4 0 0 0 0.0086209 2 30637 30637;30745 89.401 65.38 1 50915000 74094 4634 49628 50691 86146;86147 86146 0.003979947861580513 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.304931640625 2 602.305864 1202.59717 -0.49963 -0.00030093 -0.23697 -0.00014273 -0.7366 -0.00044366 602.3054993346384 56.234 0.23049 56.165 56 56.23 -0.068737 21 11 2 0 0 0 0.010301 1 30532 30532 79.596 43.09 1 7300200 74095 4634 49628 50691 86148 86148 0.003979947861580513 VYEYVVERF 9 Unmodified _VYEYVVERF_ 0 0 0 nc|ENSG00000134744|Q5TAX3|TUT4;ENSG00000134744|ENST00000257177|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 nc|ENSG00000134744|Q5TAX3|TUT4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3067016601562 2 602.305864 1202.59717 0.0038031 2.2906E-06 0.70231 0.000423 0.70611 0.00042529 602.3062385653247 62.118 0.76557 55.942 55.76 56.526 -6.1757 105 41 3 0 0 0 0.0061223 4 39996 39996;40122;40262;40402 114.2 79.8 1 118500000 74096 4634 49628 50691 86149;86150;86151;86152 86149 0.003979947861580513 VYFADSGNTYS 11 Unmodified _VYFADSGNTYS_ 0 0 0 ENST00000471720.1_1_3:160170509-160171103:+|nuORF ENST00000471720.1_1_3:160170509-160171103:+|nuORF ENST00000471720.1_1_3:160170509-160171103:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.264404296875 2 612.264393 1222.51423 -0.38638 -0.00023657 0.74554 0.00045647 0.35915 0.0002199 612.2647655407286 41.226 0.29892 41.226 41.045 41.344 0 43 14 4 0 0 0 0.39949 1 22243 22243 21.537 5.6898 1 17942000 74097 13883 49629 50692 86153 86153 -0.08812366732445298 VYFADSGNTYS 11 Unmodified _VYFADSGNTYS_ 0 0 0 ENST00000471720.1_1_3:160170509-160171103:+|nuORF ENST00000471720.1_1_3:160170509-160171103:+|nuORF ENST00000471720.1_1_3:160170509-160171103:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 612.264393 1222.51423 -0.12923 -7.9123E-05 -0.34601 -0.00021185 -0.47524 -0.00029097 612.2639814859265 41.548 0.090965 41.245 41.171 41.262 -0.30304 0.0094729 -0.0012408 NaN 21.537 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 3264500 74098 13883 49629 50692 -0.08812366732445298 VYFAPGSG 8 Unmodified _VYFAPGSG_ 0 0 0 REV__ENSG00000282419|ENST00000632372|TEX13D REV__ENSG00000282419|ENST00000632372|TEX13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 797.3956909179688 1 797.382831 796.375555 0.17654 0.00014077 0.98404 0.00078466 1.1606 0.00092543 797.3836943288968 64.608 0.36565 64.123 63.993 64.359 -0.48512 25 16 2 0 0 0 0.80676 1 35205 35205 2.5775 0 1 1368600 + 74099 24684 49630 50693 86154 86154 -0.030778201194721078 VYFCHCRNI 9 2 Carbamidomethyl (C) _VYFC(Carbamidomethyl (C))HC(Carbamidomethyl (C))RNI_ VYFC(1)HC(1)RNI VYFC(44)HC(44)RNI 0 2 0 nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3;ENST00000485363.1_1_11:116775672-116969011:-|nuORF nc|ENSG00000160584|Q9Y2K2-7|SIK3 nc|ENSG00000160584|Q9Y2K2-7|SIK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.8611145019531 3 423.526954 1267.55903 1.2803 0.00054226 -0.69322 -0.0002936 0.58712 0.00024866 423.52663015639575 32.218 0.31779 28.362 28.198 28.516 -3.8562 22 18 2 0 0 0 0.05483 1 18327 18327 43.772 28.815 1 13407000 74100 6735 49631 50694 86155 86155 661;662 -0.06404537671778598 VYFCHLDIIW 10 Carbamidomethyl (C) _VYFC(Carbamidomethyl (C))HLDIIW_ VYFC(1)HLDIIW VYFC(48)HLDIIW 0 1 0 ENSG00000127129|ENST00000372587|EDN2;ENSG00000078401|ENST00000379375|EDN1 ENSG00000127129|ENST00000372587|EDN2 ENSG00000127129|ENST00000372587|EDN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.3355712890625 2 683.336641 1364.65873 0.86666 0.00059222 -0.63623 -0.00043476 0.23043 0.00015746 683.3363553305501 99.642 0.075821 93.466 93.432 93.508 -6.1757 8 4 2 0 0 0 0.092434 1 66444 66444 48.346 34.44 1 24059000 74101 1243 49632 50695 86156 86156 111 -0.00901396786184705 VYFDRDLVLHI 11 Unmodified _VYFDRDLVLHI_ 0 0 0 ENST00000498486.1_1_2:172336502-172337621:+|nuORF;nc|ENSG00000115827|Q5H9S7-2|DCAF17;ENSG00000115827|ENST00000375255|DCAF17 ENST00000498486.1_1_2:172336502-172337621:+|nuORF ENST00000498486.1_1_2:172336502-172337621:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.2806091308594 3 463.922355 1388.74524 0.57499 0.00026675 0.81948 0.00038017 1.3945 0.00064693 463.9222591259718 74.34 0.19627 73.864 73.69 73.887 -0.47588 12 7 2 0 0 0 0.30551 1 40644 40644 2.6312 0.54523 1 474320 74102 3165 49633 50696 86157 86157 0.06641306040023665 VYFDRDLVLHI 11 Unmodified _VYFDRDLVLHI_ 0 0 0 ENST00000498486.1_1_2:172336502-172337621:+|nuORF;nc|ENSG00000115827|Q5H9S7-2|DCAF17;ENSG00000115827|ENST00000375255|DCAF17 ENST00000498486.1_1_2:172336502-172337621:+|nuORF ENST00000498486.1_1_2:172336502-172337621:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 463.922355 1388.74524 0.36584 0.00016972 -0.099203 -4.6023E-05 0.26664 0.0001237 464.25654210306607 73.792 0.21062 73.835 73.713 73.924 0.043983 -0.014286 -0.0003571 NaN 2.6312 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1366700 74103 3165 49633 50696 0.06641306040023665 VYFEGSDFKF 10 Unmodified _VYFEGSDFKF_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.2965698242188 2 619.790047 1237.56554 -0.0044296 -2.7454E-06 4.0264 0.0024955 4.0219 0.0024927 619.7926175977597 69.944 0.24752 69.465 69.267 69.515 -0.47903 21 10 3 0 0 0 0.32072 1 38198 38198 26.268 8.1218 1 2745900 74104 5638 49634 50697 86158 86158 -0.043739979677638985 VYFEGSDFKF 10 Unmodified _VYFEGSDFKF_ 0 0 0 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 ENSG00000144736|ENST00000325599|SHQ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.7891845703125 2 619.790047 1237.56554 NaN NaN NaN NaN NaN NaN NaN 70.017 1 69.538 69.038 70.038 -0.47903 0 0 0 0.71157 1 38282 38282 16.149 6.766 1 74105 5638 49634 50697 86159 86159 -0.043739979677638985 VYFEYEEKI 9 Unmodified _VYFEYEEKI_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.298583984375 2 610.297704 1218.58086 0.93518 0.00057074 0.96972 0.00059182 1.9049 0.0011626 610.2981007607153 80.493 0.32158 80.001 79.83 80.152 -0.49247 27 12 3 0 0 0 0.53666 1 44094 44094 5.2307 0.47466 1 759000 74106 1606 49635 50698 86160 86160 -0.019691311705855696 VYFEYEEKI 9 Unmodified _VYFEYEEKI_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 610.297704 1218.58086 0.10975 6.6978E-05 -0.18747 -0.00011441 -0.07772 -4.7432E-05 610.2976868258572 80.001 0.20332 80.001 79.864 80.067 0 0.00013417 -0.00082015 NaN 5.2307 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 785010 74107 1606 49635 50698 -0.019691311705855696 VYFEYEEKI 9 Unmodified _VYFEYEEKI_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENST00000555259.5_1_14:31112578-31185169:+|nuORF ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 610.297704 1218.58086 0.93518 0.00057074 0.96972 0.00059182 1.9049 0.0011626 610.2981007607153 80.493 0.32158 80.001 79.83 80.152 -0.49247 -0.00013417 0.00059231 NaN 5.2307 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 759000 74108 1606 49635 50698 -0.019691311705855696 VYFFFFHF 8 Unmodified _VYFFFFHF_ 0 0 0 ENST00000550011.5_1_12:32832273-32858928:+|nuORF ENST00000550011.5_1_12:32832273-32858928:+|nuORF ENST00000550011.5_1_12:32832273-32858928:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8036804199219 3 385.188373 1152.54329 0.53249 0.00020511 1.4455 0.0005568 1.978 0.00076191 385.5230194110671 42.494 0.14297 42.494 42.401 42.544 0 9 6 2 0 0 0 8.7369 1 22966 22966 0.45834 0.057624 1 1250200 74109 15159 49636 50699 86161 86161 -0.026881328548597594 VYFFFFHF 8 Unmodified _VYFFFFHF_ 0 0 0 ENST00000550011.5_1_12:32832273-32858928:+|nuORF ENST00000550011.5_1_12:32832273-32858928:+|nuORF ENST00000550011.5_1_12:32832273-32858928:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 385.188373 1152.54329 0.11676 4.4975E-05 1.0666 0.00041085 1.1834 0.00045582 385.1886809889728 42.72 0.095547 42.411 42.336 42.431 -0.30935 -0.041532 -0.00021632 NaN 0.45834 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2899700 74110 15159 49636 50699 -0.026881328548597594 VYFFSPAPD 9 Unmodified _VYFFSPAPD_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000568463.1_1_16:68389580-68391124:+|nuORF;ENST00000568975.5_1_16:68386292-68391124:+|nuORF nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.759033203125 2 521.74765 1041.48075 0.56487 0.00029472 -2.1455 -0.0011194 -1.5806 -0.00082468 521.7469226057003 67.998 0.74334 67.998 67.719 68.463 0 92 35 4 0 0 0 0.30562 1 38079 38079 16.942 2.104 1 13407000 74111 4425 49637 50700 86162 86162 -0.038333237137067044 VYFGDPVSL 9 Unmodified _VYFGDPVSL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 996.5040283203125 1 996.503674 995.496398 0.0089103 8.8792E-06 0.47029 0.00046864 0.4792 0.00047752 996.5040418527032 75.473 0.34535 75.473 75.275 75.621 0 35 14 3 0 0 0 0.008678 3 42004 41910;41934;42004 88.904 58.267 1 4318300 74112 3266 49638 50701 86163;86164;86165 86165 -0.001530371966509847 VYFGDPVSL 9 Unmodified _VYFGDPVSL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2143249511719 2 498.755475 995.496398 0.36677 0.00018293 -0.14059 -7.0119E-05 0.22618 0.00011281 498.75550410552177 75.472 0.27459 75.472 75.297 75.571 0 19 11 2 0 0 0 0.20727 1 41938 41938 7.9102 2.1497 1 886790 74113 3266 49638 50701 86166 86166 -0.001530371966509847 VYFGDPVSL 9 Unmodified _VYFGDPVSL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.50439453125 1 996.503674 995.496398 0.36202 0.00036075 0.34822 0.000347 0.71024 0.00070775 996.5040431459313 75.903 0.40668 75.426 75.235 75.641 -0.47714 51 17 4 0 0 0 2.6046E-06 2 41589 41493;41589 156.16 101.38 1 10442000 74114 3266 49638 50701 86167;86168 86168 -0.001530371966509847 VYFGDPVSL 9 Unmodified _VYFGDPVSL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7553100585938 2 498.755475 995.496398 0.33678 0.00016797 -0.40187 -0.00020044 -0.065098 -3.2468E-05 498.75546876447237 75.922 0.38503 75.445 75.235 75.62 -0.47714 34 16 3 0 0 0 0.052168 1 41545 41545 44.407 14.182 1 1928600 74115 3266 49638 50701 86169 86169 -0.001530371966509847 VYFGDPVSL 9 Unmodified _VYFGDPVSL_ 0 0 0 ENSG00000116906|ENST00000366647|GNPAT;nc|ENSG00000116906|O15228-2|GNPAT;ENST00000492459.1_1_1:231402025-231403654:+|nuORF ENSG00000116906|ENST00000366647|GNPAT ENSG00000116906|ENST00000366647|GNPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 996.5035400390625 1 996.503674 995.496398 0.87593 0.00087287 0.2312 0.00023039 1.1071 0.0011033 996.503964481537 83.641 0.54801 77.466 77.192 77.74 -6.1757 72 28 3 0 0 0 0.00069393 3 54867 54867;54984;55110 141.83 97.42 1 60343000 74116 3266 49638 50701 86170;86171;86172 86170 -0.001530371966509847 VYFGHWVVM 9 Oxidation (M) _VYFGHWVVM(Oxidation (M))_ VYFGHWVVM(1) VYFGHWVVM(110) 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2781982421875 2 577.278595 1152.54264 1.1434 0.00066007 -0.45738 -0.00026404 0.68604 0.00039603 577.2784342953893 64.234 0.3017 64.223 64.056 64.358 -0.010529 56 14 5 0 0 0 0.0079702 2 35118 35118;35223 109.15 94.316 1 73338000 74117 12988;15781 49639 50702 86173;86174 86173 1759 -0.02753295566253655 VYFGHWVVM 9 Oxidation (M) _VYFGHWVVM(Oxidation (M))_ VYFGHWVVM(1) VYFGHWVVM(94) 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2791748046875 2 577.278595 1152.54264 1.0414 0.00060118 -0.32461 -0.00018739 0.71679 0.00041379 577.2785454817611 64.47 0.34875 64.46 64.338 64.686 -0.010536 64 17 5 0 0 0 0.0081202 1 35328 35328 93.763 76.676 1 74750000 74118 12988;15781 49639 50702 86175 86175 1759 -0.02753295566253655 VYFGHWVVM 9 Oxidation (M) _VYFGHWVVM(Oxidation (M))_ VYFGHWVVM(1) VYFGHWVVM(110) 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2791748046875 2 577.278595 1152.54264 1.1788 0.00068048 0.43749 0.00025255 1.6163 0.00093303 577.2789061417187 71.477 0.75174 65.302 64.943 65.694 -6.1757 53 38 2 0 0 0 0.0079702 3 46614 46614;46747;46885 109.15 88.74 1 23535000 74119 12988;15781 49639 50702 86176;86177;86178 86176 1759 -0.02753295566253655 VYFGHWVVM 9 Oxidation (M) _VYFGHWVVM(Oxidation (M))_ VYFGHWVVM(1) VYFGHWVVM(110) 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7811889648438 2 577.278595 1152.54264 1.0759 0.00062111 0.86366 0.00049857 1.9396 0.0011197 577.2791004953958 71.998 0.30453 65.822 65.637 65.941 -6.1757 27 16 2 0 0 0 0.0079702 1 47047 47047 109.15 82.886 1 27497000 74120 12988;15781 49639 50702 86179 86179 1759 -0.02753295566253655 VYFGHWVVM 9 Oxidation (M) _VYFGHWVVM(Oxidation (M))_ VYFGHWVVM(1) VYFGHWVVM(94) 0 0 1 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2763061523438 2 577.278595 1152.54264 0.95441 0.00055096 -1.8184 -0.0010497 -0.864 -0.00049877 577.2773455442544 72.548 0.67628 66.372 65.941 66.618 -6.1757 65 34 3 0 0 0 0.0081202 3 47386 47274;47386;47507 93.763 73.348 1 28620000 74121 12988;15781 49639 50702 86180;86181;86182 86181 1759 -0.02753295566253655 VYFGHWVVM 9 Unmodified _VYFGHWVVM_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.2814331054688 2 569.281137 1136.54772 0.27374 0.00015584 -0.80054 -0.00045573 -0.5268 -0.00029989 569.2805884534149 77.699 0.32932 77.751 77.56 77.89 0.052444 28 13 3 0 0 0 0.1492 1 42857 42857 28.173 11.231 1 17428000 74122 12988;15781 49639 50703 86183 86183 -0.015089917036220868 VYFGHWVVM 9 Unmodified _VYFGHWVVM_ 0 0 0 ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000412609.5_1_19:40170059-40174276:+|nuORF;ENST00000598164.2_1_19:40172096-40174784:+|nuORF ENST00000598164.2_1_19:40172096-40174784:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.281982421875 2 569.281137 1136.54772 1.3611 0.00077485 -0.24659 -0.00014038 1.1145 0.00063447 569.2809316075936 96 0.40737 89.824 89.618 90.025 -6.1757 90 24 5 0 0 0 0.028712 2 63556 63556;63680 56.048 41.21 1 527580000 74123 12988;15781 49639 50703 86184;86185 86184 -0.015089917036220868 VYFISPQGLKF 11 Unmodified _VYFISPQGLKF_ 0 0 0 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-3|MBD4 nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MSMS AL20221201_MKP_PDAC_01 4 649.8604736328125 2 649.860806 1297.70706 NaN NaN NaN NaN NaN NaN NaN 95.481 1 89.306 88.806 89.806 -6.1757 0 0 0 0.095619 1 63244 63244 51.415 36.167 1 74124 4112 49640 50704 86186 86186 0.07011420125354562 VYFKAQWK 8 Unmodified _VYFKAQWK_ 0 0 0 CON__A2I7N0 CON__A2I7N0 CON__A2I7N0 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.2039489746094 3 357.19916 1068.57565 -0.20155 -7.1993E-05 -2.6806 -0.00095751 -2.8822 -0.0010295 357.1979312977615 32.567 0.59132 32.597 32.151 32.742 0.029743 49 24 4 0 0 0 0.80676 1 17047 17047 1.6526 0 1 25898000 + 74125 136 49641 50705 86187 86187 0.0441065454810996 VYFKNKLKL 9 Unmodified _VYFKNKLKL_ 0 0 0 ENSG00000136010|ENST00000258494|ALDH1L2;nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ENST00000552427.1_1_12:105464346-105478214:-|nuORF;nc|ENSG00000136010|Q3SY69-2|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 ENSG00000136010|ENST00000258494|ALDH1L2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.5462951660156 3 384.909498 1151.70667 1.7519 0.00067431 -0.19726 -7.5928E-05 1.5546 0.00059838 384.9093325201049 35.96 0.34984 31.767 31.598 31.948 -4.1928 32 21 2 0 0 0 0.21767 1 20912 20912 0.26902 0 1 6895800 74126 4774 49642 50706 86188 86188 0.13688045196158782 VYFKQQQYL 9 Unmodified _VYFKQQQYL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.822265625 2 608.821681 1215.62881 0.66126 0.00040259 0.10566 6.4329E-05 0.76692 0.00046692 609.3231425195448 46.899 0.17785 46.562 46.483 46.661 -0.33664 11 8 2 0 0 0 0.12841 1 25146 25146 30.225 7.4885 1 2151400 74127 10045 49643 50707 86189 86189 0.029619875401522222 VYFKQQQYL 9 Unmodified _VYFKQQQYL_ 0 0 0 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 ENSG00000198060|ENST00000358935|MARCHF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.822509765625 2 608.821681 1215.62881 1.4062 0.00085611 -0.44995 -0.00027394 0.95622 0.00058217 608.8211755887332 46.656 0.18389 46.623 46.491 46.675 -0.033417 18 8 3 0 0 0 0.019979 1 25109 25109 63.563 46.621 1 2683500 74128 10045 49643 50707 86190 86190 0.029619875401522222 VYFLQNYASL 10 Unmodified _VYFLQNYASL_ 0 0 0 ENSG00000184949|ENST00000535113|FAM227A;nc|ENSG00000184949|F5H4B4-2|FAM227A;ENST00000540952.5_1_22:38982050-39003412:-|nuORF ENSG00000184949|ENST00000535113|FAM227A ENSG00000184949|ENST00000535113|FAM227A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3138427734375 2 609.313689 1216.61282 0.86609 0.00052772 0.32004 0.000195 1.1861 0.00072273 609.3137963661342 58.208 0.299 58.148 57.975 58.274 -0.060719 33 14 3 0 0 0 0.16524 1 31670 31670 37.974 5.1883 1 9079100 74129 9306 49644 50708 86191 86191 0.013182813032244667 VYFNPLEAKLY 11 Unmodified _VYFNPLEAKLY_ 0 0 0 ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-5|HYDIN;nc|ENSG00000157423|Q4G0P3-6|HYDIN;nc|ENSG00000157423|Q4G0P3-10|HYDIN;nc|ENSG00000157423|Q4G0P3-8|HYDIN ENSG00000157423|ENST00000393567|HYDIN ENSG00000157423|ENST00000393567|HYDIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 678.8638305664062 2 678.863546 1355.71254 0.8802 0.00059753 0.0068567 4.6548E-06 0.88705 0.00060219 678.8634743835445 85.851 0.92995 79.676 79.107 80.037 -6.1757 163 53 4 0 0 0 0.557 3 56388 56255;56388;56657 17.113 12.241 1 91344000 74130 6517 49645 50709 86192;86193;86194 86193 0.04891098917164527 VYFPAISLY 9 Unmodified _VYFPAISLY_ 0 0 0 ENSG00000129691|ENST00000343823|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L ENSG00000129691|ENST00000343823|ASH2L ENSG00000129691|ENST00000343823|ASH2L MSMS AL20221201_MKP_PDAC_01 4 536.788818359375 2 536.789318 1071.56408 NaN NaN NaN NaN NaN NaN NaN 74.261 1 68.085 67.585 68.585 -6.1757 0 0 0 0.46757 1 48554 48554 16.942 0 1 74131 4159 49646 50710 86195 86195 0.031164127341526182 VYFPDQHINF 10 Unmodified _VYFPDQHINF_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3091430664062 2 640.308938 1278.60332 0.27633 0.00017694 -0.078989 -5.0577E-05 0.19734 0.00012636 640.3088603130669 64.726 0.43104 64.241 63.993 64.424 -0.48512 65 19 5 0 0 0 0.02847 2 35353 35249;35353 79.596 61.45 1 16467000 74132 3192 49647 50711 86196;86197 86197 -0.024834869822825567 VYFPDQHINF 10 Unmodified _VYFPDQHINF_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.3079223632812 2 640.308938 1278.60332 0.96157 0.0006157 -0.88342 -0.00056566 0.078145 5.0037E-05 640.3083172275725 64.208 0.3214 64.198 64.037 64.358 -0.010536 40 15 3 0 0 0 0.07026 1 35136 35136 62.573 40.826 1 7296200 74133 3192 49647 50711 86198 86198 -0.024834869822825567 VYFPDQHINF 10 Unmodified _VYFPDQHINF_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.310302734375 2 640.308938 1278.60332 0.95565 0.00061191 0.98562 0.0006311 1.9413 0.001243 640.3097927807504 71.294 0.56081 65.118 64.806 65.367 -6.1757 66 27 3 0 0 0 0.02847 2 46582 46582;46704 79.596 61.45 1 87678000 74134 3192 49647 50711 86199;86200 86199 -0.024834869822825567 VYFPDQHINF 10 Unmodified _VYFPDQHINF_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 640.308938 1278.60332 -0.017184 -1.1003E-05 0.008302 5.3158E-06 -0.0088817 -5.687E-06 640.3089066412186 64.181 0.14288 64.181 64.071 64.214 0 -0.0258 0.00048586 NaN 79.596 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 423760 74135 3192 49647 50711 -0.024834869822825567 VYFPERPSLF 10 Unmodified _VYFPERPSLF_ 0 0 0 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8279418945312 2 627.829506 1253.64446 0.47432 0.00029779 -2.7328 -0.0017158 -2.2585 -0.001418 627.8270486623966 40.619 0.20454 40.316 40.214 40.418 -0.30304 20 9 3 0 0 0 0.32072 1 21484 21484 26.268 2.2476 1 2557700 + 74136 18189 49648 50712 86201 86201 0.02778274057186536 VYFPERPSLF 10 Unmodified _VYFPERPSLF_ 0 0 0 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 REV__nc|ENSG00000101639|Q8TEP8-1|CEP192 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 627.829506 1253.64446 0.47432 0.00029779 -2.7328 -0.0017158 -2.2585 -0.001418 627.8270486623966 40.619 0.20454 40.316 40.214 40.418 -0.30304 0 0 NaN 26.268 20 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2557700 + 74137 18189 49648 50712 0.02778274057186536 VYFQARLYHTL 11 Unmodified _VYFQARLYHTL_ 0 0 0 nc|ENSG00000089053|Q9UJX4-3|ANAPC5;ENSG00000089053|ENST00000261819|ANAPC5;ENST00000422342.2_1_12:121746285-121747708:-|nuORF;ENST00000535641.5_1_12:121746285-121765135:-|nuORF nc|ENSG00000089053|Q9UJX4-3|ANAPC5 nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 470.9223327636719 3 470.922467 1409.74557 -0.19188 -9.0362E-05 0.35163 0.00016559 0.15975 7.5228E-05 470.9226370210317 53.386 0.28683 53.323 53.136 53.423 -0.063423 37 13 4 0 0 0 0.078696 1 28906 28906 44.945 34.928 1 14439000 74138 1511 49649 50713 86202 86202 0.057087257599050645 VYFRALVNF 9 Unmodified _VYFRALVNF_ 0 0 0 ENSG00000142798|ENST00000374695|HSPG2;ENST00000439717.2_1_1:22216375-22222731:-|nuORF ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8151245117188 2 564.813659 1127.61277 1.3603 0.00076832 -1.9131 -0.0010806 -0.55281 -0.00031223 565.3115101305738 96.057 0.45847 89.881 89.678 90.136 -6.1757 68 27 4 0 0 0 0.0041763 1 63636 63636 120.45 84.323 1 23674000 74139 5448 49650 50714 86203 86203 0.054063260938846724 VYFRERGC 8 Unmodified _VYFRERGC_ 0 0 0 ENST00000432176.6_1_7:23030683-23053546:-|nuORF ENST00000432176.6_1_7:23030683-23053546:-|nuORF ENST00000432176.6_1_7:23030683-23053546:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.252685546875 2 515.250369 1028.48618 0.77221 0.00039788 3.0675 0.0015805 3.8397 0.0019784 515.2518117929397 34.651 0.55807 30.556 30.177 30.735 -4.0951 77 32 3 0 0 0 0.64853 1 19949 19949 21.747 0.87544 1 28182000 74140 13272 49651 50715 86204 86204 -0.026919234028810024 VYFRIQDLEMF 11 Oxidation (M) _VYFRIQDLEM(Oxidation (M))F_ VYFRIQDLEM(1)F VYFRIQDLEM(72)F 0 0 1 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 738.8634643554688 2 738.86322 1475.71189 1.3651 0.0010086 0.36077 0.00026656 1.7258 0.0012752 738.8636330020712 82.491 0.26936 82.553 82.394 82.664 0.062004 29 9 4 0 0 0 0.0071133 1 45628 45628 71.708 63.552 1 10400000 74141 8698 49652 50716 86205 86205 1469 -0.006940637941852401 VYFRIQDLEMF 11 Oxidation (M) _VYFRIQDLEM(Oxidation (M))F_ VYFRIQDLEM(1)F VYFRIQDLEM(65)F 0 0 1 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 738.86474609375 2 738.86322 1475.71189 1.1227 0.0008295 0.87133 0.00064379 1.994 0.0014733 738.863894659107 82.701 0.33151 82.763 82.637 82.969 0.062004 33 12 4 0 0 0 0.012228 1 45742 45742 65.474 58.372 1 8791200 74142 8698 49652 50716 86206 86206 1469 -0.006940637941852401 VYFRIQDLEMF 11 Oxidation (M) _VYFRIQDLEM(Oxidation (M))F_ VYFRIQDLEM(1)F VYFRIQDLEM(110)F 0 0 1 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 738.8638305664062 2 738.86322 1475.71189 1.0911 0.00080619 0.40934 0.00030244 1.5005 0.0011086 738.8634978285723 96.933 0.24036 90.757 90.605 90.845 -6.1757 23 13 2 0 0 0 1.267E-08 1 64207 64207 107.56 86.026 1 24206000 74143 8698 49652 50716 86207 86207 1469 -0.006940637941852401 VYFRIQDLEMF 11 Oxidation (M) _VYFRIQDLEM(Oxidation (M))F_ VYFRIQDLEM(1)F VYFRIQDLEM(110)F 0 0 1 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 738.8633422851562 2 738.86322 1475.71189 1.1702 0.00086462 -0.2271 -0.00016779 0.9431 0.00069682 739.3646392687671 97.105 0.19934 90.929 90.845 91.044 -6.1757 21 11 2 0 0 0 1.267E-08 1 64347 64347 107.56 90.998 1 29716000 74144 8698 49652 50716 86208 86208 1469 -0.006940637941852401 VYFRIQDLEMF 11 Oxidation (M) _VYFRIQDLEM(Oxidation (M))F_ 0 0 1 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 738.86322 1475.71189 0.32353 0.00023905 -0.86346 -0.00063798 -0.53993 -0.00039893 738.8617620625483 83.296 0.21807 82.798 82.672 82.89 -0.49751 0.12265 -0.0016913 NaN 71.708 12 8 3 NaN NaN NaN NaN 0 NaN NaN 0 335350 74145 8698 49652 50716 1469 -0.006940637941852401 VYFRIQDLEMF 11 Unmodified _VYFRIQDLEMF_ 0 0 0 nc|ENSG00000177663|Q96F46-2|IL17RA;ENSG00000177663|ENST00000319363|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20221201_MKP_PDAC_01 4 731.3652954101562 2 730.865763 1459.71697 0.69389 0.00050714 -0.044509 -3.253E-05 0.64938 0.00047461 730.8659316270982 99.518 0.18672 93.342 93.261 93.448 -6.1757 29 11 3 0 0 0 0.00092607 1 66306 66306 100.71 81.347 1 66910000 74146 8698 49652 50717 86209 86209 0.005502400684463282 VYFRLHASI 9 Unmodified _VYFRLHASI_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.3098754882812 2 553.311284 1104.60801 0.86088 0.00047633 -0.64311 -0.00035584 0.21777 0.00012049 553.3102040625553 35.167 0.20209 31.072 30.935 31.137 -4.0951 15 11 2 0 0 0 0.30562 1 20357 20357 16.942 0.37642 1 11311000 74147 1731 49653 50718 86210 86210 0.059894419511238084 VYFSAAHAL 9 Unmodified _VYFSAAHAL_ 0 0 0 nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 nc|ENSG00000135336|Q9UBD5-3|ORC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7569580078125 2 489.75581 977.497067 1.045 0.0005118 0.47249 0.00023141 1.5175 0.00074321 489.7559046411113 55.027 0.49368 49.106 48.873 49.366 -5.9211 53 30 2 0 0 0 0.012158 1 34888 34888 74.396 49.722 1 20717000 74148 4692 49654 50719 86211 86211 0.007418022430329074 VYFSAIQKI 9 Unmodified _VYFSAIQKI_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS AL20221201_MKP_PDAC_01 4 534.8047485351562 2 534.808042 1067.60153 NaN NaN NaN NaN NaN NaN NaN 64.784 1 58.608 58.108 59.108 -6.1757 0 0 0 0.12343 1 42004 42004 39.95 14.55 1 74149 4060 49655 50720 86212 86212 0.07043503999739187 VYFSAIQKI 9 Unmodified _VYFSAIQKI_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS AL20221201_MKP_PDAC_01 4 534.810546875 2 534.808042 1067.60153 NaN NaN NaN NaN NaN NaN NaN 64.795 1 58.619 58.119 59.119 -6.1757 0 0 0 0.083082 1 42013 42013 47.749 15.443 1 74150 4060 49655 50720 86213 86213 0.07043503999739187 VYFSRLVSL 9 Unmodified _VYFSRLVSL_ 0 0 0 REV__ENSG00000141096|ENST00000268793|DPEP3 REV__ENSG00000141096|ENST00000268793|DPEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.3137817382812 2 542.313492 1082.61243 -0.15329 -8.313E-05 0.13843 7.5073E-05 -0.014856 -8.0567E-06 542.3137518460778 51.198 0.35223 50.785 50.597 50.949 -0.41351 58 17 4 0 0 0 0.15471 1 27651 27651 27.629 0.74515 1 22671000 + 74151 20518 49656 50721 86214 86214 0.07442906374035374 VYFSRLVSL 9 Unmodified _VYFSRLVSL_ 0 0 0 REV__ENSG00000141096|ENST00000268793|DPEP3 REV__ENSG00000141096|ENST00000268793|DPEP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3141479492188 2 542.313492 1082.61243 0.39044 0.00021174 -0.29791 -0.00016156 0.09253 5.0181E-05 542.3135732937856 56.705 0.3806 50.728 50.542 50.923 -5.9769 44 21 3 0 0 0 0.21643 1 36168 36168 21.537 1.0834 1 35014000 + 74152 20518 49656 50721 86215 86215 0.07442906374035374 VYFSWEEWDL 10 Unmodified _VYFSWEEWDL_ 0 0 0 nc|ENSG00000121417|Q13398-6|ZNF211;nc|ENSG00000121417|Q13398|ZNF211;nc|ENSG00000121417|Q13398-4|ZNF211;nc|ENSG00000121417|Q13398-3|ZNF211;ENSG00000121417|ENST00000240731|ZNF211;nc|ENSG00000121417|Q13398-8|ZNF211 nc|ENSG00000121417|Q13398-6|ZNF211 nc|ENSG00000121417|Q13398-6|ZNF211 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.5408935546875 3 458.539799 1372.59757 0.91823 0.00042104 1.6733 0.00076729 2.5916 0.0011883 458.54086072318034 36.774 0.20886 36.774 36.648 36.857 0 19 9 3 0 0 0 0.71981 1 19531 19531 0.69767 0.07084 1 1822800 74153 3583 49657 50722 86216 86216 -0.07382630284610059 VYFTNELKQF 10 Unmodified _VYFTNELKQF_ 0 0 0 ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.8316650390625 2 644.832246 1287.64994 0.15325 9.8823E-05 0.27523 0.00017747 0.42848 0.0002763 644.8324433909936 63.341 0.28209 62.855 62.709 62.992 -0.48617 34 12 4 0 0 0 0.051223 1 34534 34534 57.722 24.936 1 2527700 74154 13761 49658 50723 86217 86217 0.017619528489831282 VYFTNELKQF 10 Unmodified _VYFTNELKQF_ 0 0 0 ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8324584960938 2 644.832246 1287.64994 0.46102 0.00029728 0.16991 0.00010956 0.63092 0.00040684 644.8328308103556 62.894 0.29714 62.872 62.752 63.049 -0.021614 24 14 2 0 0 0 0.041224 1 34430 34430 62.573 22.623 1 4644500 74155 13761 49658 50723 86218 86218 0.017619528489831282 VYFTNELKQF 10 Unmodified _VYFTNELKQF_ 0 0 0 ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 644.8306274414062 2 644.832246 1287.64994 NaN NaN NaN NaN NaN NaN NaN 72.421 1 66.245 65.745 66.745 -6.1757 0 0 0 0.017269 1 47383 47383 75.761 35.811 1 74156 13761 49658 50723 86219 86219 0.017619528489831282 VYFTRIIAI 9 Unmodified _VYFTRIIAI_ 0 0 0 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 ENSG00000125734|ENST00000264080|GPR108 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3326416015625 2 548.331685 1094.64882 0.11884 6.5162E-05 1.0416 0.00057116 1.1605 0.00063632 548.332169793017 77.22 0.24615 77.27 77.149 77.395 0.05011 21 9 3 0 0 0 0.085786 1 42620 42620 45.74 9.6957 1 1660100 74157 3876 49659 50724 86220 86220 0.10527783270731561 VYFYWMNFL 9 Unmodified _VYFYWMNFL_ 0 0 0 ENSG00000104321|ENST00000262209|TRPA1 ENSG00000104321|ENST00000262209|TRPA1 ENSG00000104321|ENST00000262209|TRPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2038879394531 3 428.203694 1281.58925 0.44754 0.00019164 -0.082944 -3.5517E-05 0.36459 0.00015612 428.2035677956092 63.205 0.29021 63.184 63.049 63.34 -0.021614 37 14 3 0 0 0 0.49272 1 34577 34577 4.897 0 1 7794300 74158 2193 49660 50725 86221 86221 -0.040278557349438415 VYGAPTGL 8 Unmodified _VYGAPTGL_ 0 0 0 REV__ENSG00000125304|ENST00000376387|TM9SF2 REV__ENSG00000125304|ENST00000376387|TM9SF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2095642089844 2 389.210704 776.406855 NaN NaN NaN NaN NaN NaN NaN 54.559 1 54.492 53.992 54.992 -0.066936 0 0 0 0.94749 1 29631 29631 11.114 0 1 + 74159 19485 49661 50726 86222 86222 0.00970752914622608 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2406005859375 2 538.24019 1074.46583 0.24481 0.00013177 0.37971 0.00020437 0.62452 0.00033614 538.2403976079091 63.031 0.7263 63.031 62.589 63.315 0 73 30 4 0 0 0 0.070838 2 35192 35092;35192 39.957 20.7 1 24835000 74160 2920 49662 50727 86223;86224 86224 -0.06842815581717332 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2408447265625 2 538.24019 1074.46583 0.21824 0.00011747 0.30667 0.00016506 0.52492 0.00028253 538.2402730058182 63.598 0.34728 63.112 62.927 63.274 -0.48617 40 15 3 0 0 0 0.10734 2 34633 34633;34740 32.305 20.577 1 9149400 74161 2920 49662 50727 86225;86226 86225 -0.06842815581717332 VYGDFQEAF 9 Unmodified _VYGDFQEAF_ 0 0 0 ENSG00000112773|ENST00000320172|TENT5A;nc|ENSG00000112773|Q96IP4-2|TENT5A ENSG00000112773|ENST00000320172|TENT5A ENSG00000112773|ENST00000320172|TENT5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2406616210938 2 538.24019 1074.46583 0.8582 0.00046192 0.34015 0.00018308 1.1983 0.000645 538.2403247442661 70.509 0.45201 64.334 64.103 64.555 -6.1757 60 24 3 0 0 0 0.026094 2 46104 45979;46104 57.471 25.166 1 79982000 74162 2920 49662 50727 86227;86228 86228 -0.06842815581717332 VYGDVISNI 9 Unmodified _VYGDVISNI_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;ENST00000481054.5_1_3:183853173-183856676:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2594604492188 2 490.258382 978.502212 0.52713 0.00025843 1.0497 0.00051465 1.5769 0.00077308 490.25912957597 60.674 0.31671 60.674 60.494 60.811 0 18 13 2 0 0 0 0.39863 1 33823 33823 12.532 3.9383 1 839750 74163 5671 49663 50728 86229 86229 0.012100613149868877 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7825927734375 2 536.782359 1071.55016 0.31272 0.00016786 -0.30272 -0.0001625 0.0099976 5.3665E-06 536.7821235878511 62.691 0.49883 62.669 62.449 62.948 -0.021614 95 25 5 0 0 0 0.010877 2 34189 34189;34301 77.984 45.679 1 326890000 74164 12001 49664 50729 86230;86231 86230 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7823486328125 2 536.782359 1071.55016 0.52711 0.00028294 -1.0035 -0.00053865 -0.47638 -0.00025571 536.7816196129759 67.991 0.7531 61.815 61.567 62.32 -6.1757 117 44 4 0 0 0 0.0083087 3 44354 44215;44354;44481 97.075 60.609 1 231250000 74165 12001 49664 50729 86232;86233;86234 86233 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7832641601562 2 536.782359 1071.55016 0.76351 0.00040984 -0.98952 -0.00053116 -0.22602 -0.00012132 536.7820324475201 73.273 1.9651 67.097 65.979 67.944 -6.1757 183 98 2 0 0 0 0.012148 10 48388 47327;47449;47567;47676;47791;47921;48037;48152;48264;48388 74.423 42.542 1 71084000 74166 12001 49664 50729 86235;86236;86237;86238;86239;86240;86241;86242;86243;86244 86244 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 536.783935546875 2 536.782359 1071.55016 NaN NaN NaN NaN NaN NaN NaN 71.042 1 64.867 64.367 65.367 -6.1757 0 0 0 0.020354 1 46435 46435 77.984 32.234 1 74167 12001 49664 50729 86245 86245 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 536.7826538085938 2 536.782359 1071.55016 NaN NaN NaN NaN NaN NaN NaN 71.953 1 65.778 65.278 66.278 -6.1757 0 0 0 0.043758 1 47068 47068 60.39 28.273 1 74168 12001 49664 50729 86246 86246 0.017251800257099603 VYGFLRNGF 9 Unmodified _VYGFLRNGF_ 0 0 0 ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF ENST00000343327.6_1_9:115030452-115095785:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 536.78271484375 2 536.782359 1071.55016 NaN NaN NaN NaN NaN NaN NaN 72.131 1 65.955 65.455 66.455 -6.1757 0 0 0 0.050352 1 47202 47202 57.471 21.005 1 74169 12001 49664 50729 86247 86247 0.017251800257099603 VYGFPVNQL 9 Unmodified _VYGFPVNQL_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7771606445312 2 518.776742 1035.53893 0.26953 0.00013983 -0.67635 -0.00035087 -0.40682 -0.00021105 518.7767258344724 75.057 0.36801 75.103 74.92 75.288 0.045967 26 17 2 0 0 0 0.023761 1 41354 41354 59.795 38.049 1 5571600 74170 5578 49665 50730 86248 86248 0.022583579315551106 VYGFQWRHF 9 Unmodified _VYGFQWRHF_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8736267089844 3 413.873447 1238.59851 -0.55245 -0.00022865 0.61324 0.0002538 0.060786 2.5158E-05 413.8736760347374 55.904 0.2375 55.835 55.705 55.942 -0.068737 29 12 3 0 0 0 0.010877 1 30359 30359 69.105 52.956 1 25377000 74171 8629 49666 50731 86249 86249 -0.011243263343885701 VYGFQWRHF 9 Unmodified _VYGFQWRHF_ 0 0 0 ENSG00000176890|ENST00000323274|TYMS;ENST00000579128.1_1_18:657682-669175:+|nuORF;nc|ENSG00000176890|P04818-2|TYMS ENSG00000176890|ENST00000323274|TYMS ENSG00000176890|ENST00000323274|TYMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.8736267089844 3 413.873447 1238.59851 1.3041 0.00053975 0.77774 0.00032189 2.0819 0.00086164 414.2084867820068 79.183 0.78906 73.008 72.515 73.304 -6.1757 109 44 3 0 0 0 0.016184 3 51821 51697;51821;51962 51.63 43.474 1 20265000 74172 8629 49666 50731 86250;86251;86252 86251 -0.011243263343885701 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2908935546875 2 527.290017 1052.56548 0.37859 0.00019963 0.5497 0.00028985 0.9283 0.00048948 527.2902089244989 55.027 0.27309 55.027 54.897 55.17 0 20 11 2 0 0 0 0.07087 1 30577 30577 39.95 14.55 1 2397800 74173 7653 49667 50732 86253 86253 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2902221679688 2 527.290017 1052.56548 0.34501 0.00018192 0.32769 0.00017279 0.67271 0.00035471 527.290012208701 55.581 0.37423 55.103 54.905 55.279 -0.47798 56 17 4 0 0 0 0.044011 2 30106 30106;30212 47.749 18.667 1 74723000 74174 7653 49667 50732 86254;86255 86254 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.28955078125 2 527.290017 1052.56548 0.10462 5.5166E-05 0.45033 0.00023745 0.55495 0.00029262 527.2901014498011 55.226 0.29831 55.157 55.019 55.317 -0.068737 43 14 4 0 0 0 0.036857 2 29971 29971;30072 51.63 11.68 1 13564000 74175 7653 49667 50732 86256;86257 86256 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2911987304688 2 527.290017 1052.56548 1.0879 0.00057366 0.12833 6.7669E-05 1.2163 0.00064133 527.289977677223 61.316 0.46087 55.168 54.918 55.379 -6.1478 58 22 4 0 0 0 0.029718 2 39405 39405;39533 55.503 22.717 1 187780000 74176 7653 49667 50732 86258;86259 86258 0.04130046822888289 VYGFVREAL 9 Unmodified _VYGFVREAL_ 0 0 0 ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF ENSG00000167671|ENST00000301281|UBXN6 ENSG00000167671|ENST00000301281|UBXN6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2920532226562 2 527.290017 1052.56548 1.437 0.00075769 3.1198 0.001645 4.5567 0.0024027 527.2919168431798 64.387 0.66697 58.212 57.955 58.622 -6.1757 46 36 2 0 0 0 0.036857 1 41799 41799 51.63 11.68 1 18849000 74177 7653 49667 50732 86260 86260 0.04130046822888289 VYGHQFMNL 9 Oxidation (M) _VYGHQFM(Oxidation (M))NL_ VYGHQFM(1)NL VYGHQFM(48)NL 0 0 1 ENSG00000146263|ENST00000683635|MMS22L;ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.764892578125 2 562.763309 1123.51206 0.13502 7.5984E-05 1.3219 0.00074394 1.457 0.00081993 562.7638150642696 39.634 0.23657 39.336 39.175 39.412 -0.29716 24 10 3 0 0 0 0.042911 1 20886 20886 48.346 32.197 1 4401600 74178 5766 49668 50733 86261 86261 1042 -0.04475073951266495 VYGHQFMNL 9 Oxidation (M) _VYGHQFM(Oxidation (M))NL_ VYGHQFM(1)NL VYGHQFM(55)NL 0 0 1 ENSG00000146263|ENST00000683635|MMS22L;ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.7642822265625 2 562.763309 1123.51206 0.25402 0.00014295 1.0616 0.0005974 1.3156 0.00074036 562.7639857810077 39.83 0.27646 39.533 39.392 39.668 -0.29716 31 13 3 0 0 0 0.031062 1 21028 21028 54.774 38.926 1 5296200 74179 5766 49668 50733 86262 86262 1042 -0.04475073951266495 VYGHQFMNL 9 Unmodified _VYGHQFMNL_ 0 0 0 ENSG00000146263|ENST00000683635|MMS22L;ENST00000506256.5_1_6:97707503-97720651:-|nuORF;ENST00000511335.5_1_6:97715738-97720957:-|nuORF;ENST00000509383.5_1_6:97679279-97717985:-|nuORF;ENST00000508976.5_1_6:97702357-97730353:-|nuORF ENSG00000146263|ENST00000683635|MMS22L ENSG00000146263|ENST00000683635|MMS22L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7662353515625 2 554.765852 1107.51715 NaN NaN NaN NaN NaN NaN NaN 53.452 1 53.388 52.888 53.888 -0.063423 0 0 0 0.50124 1 28990 28990 15.847 8.558 1 74180 5766 49668 50734 86263 86263 -0.03230770088657664 VYGHSLSYEI 10 Unmodified _VYGHSLSYEI_ 0 0 0 ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2876586914062 2 584.287671 1166.56079 1.1703 0.00068381 -0.6038 -0.00035279 0.56654 0.00033102 584.2871282506022 57.832 0.37607 57.766 57.554 57.93 -0.066036 68 18 5 0 0 0 0.42068 1 31508 31508 20.454 1.1966 1 44834000 74181 13611 49669 50735 86264 86264 -0.015828821105287716 VYGHSLSYEI 10 Unmodified _VYGHSLSYEI_ 0 0 0 ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF ENST00000457379.1_1_2:50815958-50816216:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 583.8089599609375 2 584.287671 1166.56079 0.61986 0.00036218 -0.70769 -0.0004135 -0.087834 -5.132E-05 584.2871436824404 67.07 1.8442 60.894 60.096 61.94 -6.1757 394 104 5 0 0 0 0.22941 1 44071 44071 13.906 0 1 557220000 74182 13611 49669 50735 86265 86265 -0.015828821105287716 VYGIRLEHF 9 Unmodified _VYGIRLEHF_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2;ENST00000487578.2_1_1:163295841-163298095:+|nuORF;ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENSG00000143228|ENST00000271452|NUF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.54150390625 3 378.541586 1132.60293 0.066569 2.5199E-05 0.81319 0.00030783 0.87976 0.00033303 378.5420928637098 51.706 0.37693 51.272 51.079 51.456 -0.43367 47 18 4 0 0 0 0.44883 1 27945 27945 10.151 10.151 1 34282000 74183 5481;14270 49670 50736 86266 86266 0.04193138088521664 VYGKVDSF 8 Unmodified _VYGKVDSF_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7338256835938 2 457.734543 913.454533 -0.06363 -2.9126E-05 -0.47753 -0.00021858 -0.54116 -0.00024771 457.73429286638435 33.627 0.19687 33.627 33.569 33.765 0 19 12 2 0 0 0 0.40602 1 17652 17652 43.858 7.8141 1 5763100 74184 6165 49671 50737 86267 86267 -0.005655928851979297 VYGLRRFESD 10 Unmodified _VYGLRRFESD_ 0 0 0 nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20 nc|ENSG00000163817|Q9NP91-2|SLC6A20 nc|ENSG00000163817|Q9NP91-2|SLC6A20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3173217773438 2 621.317294 1240.62004 NaN NaN NaN NaN NaN NaN NaN 91.862 1 91.862 91.362 92.362 0 0 0 0 1.0024 1 50799 50799 0.40072 0 1 74185 7077 49672 50738 86268 86268 0.009350139036769178 VYGNERFIQYL 11 Unmodified _VYGNERFIQYL_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 701.362060546875 2 701.361702 1400.70885 0.31525 0.0002211 0.26472 0.00018566 0.57996 0.00040676 701.361881221677 67.215 0.36703 66.733 66.547 66.914 -0.48218 49 16 4 0 0 0 0.096911 1 36695 36695 42.835 29.793 1 7424500 74186 1117 49673 50739 86269 86269 0.024524291433408507 VYGNERFIQYL 11 Unmodified _VYGNERFIQYL_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 701.3616943359375 2 701.361702 1400.70885 0.94497 0.00066277 -0.54232 -0.00038036 0.40265 0.0002824 701.3614775385853 66.72 0.32651 66.729 66.582 66.908 0.0095673 42 15 4 0 0 0 0.27261 1 36590 36590 28.234 12.085 1 12282000 74187 1117 49673 50739 86270 86270 0.024524291433408507 VYGNERFIQYL 11 Unmodified _VYGNERFIQYL_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 701.3617553710938 2 701.361702 1400.70885 0.27934 0.00019592 0.045657 3.2022E-05 0.325 0.00022794 701.3614004025495 80.554 0.40253 74.378 74.258 74.66 -6.1757 27 21 2 0 0 0 4.3583E-10 1 52866 52866 118.21 91.326 1 7310000 74188 1117 49673 50739 86271 86271 0.024524291433408507 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2634582519531 2 504.263468 1006.51238 -0.29258 -0.00014754 0.8155 0.00041123 0.52291 0.00026369 504.2637367151767 66.421 0.48771 65.938 65.728 66.216 -0.48324 99 24 5 0 0 0 0.045537 2 36294 36190;36294 46.921 16.696 1 96010000 74189 4302 49674 50740 86272;86273 86273 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2633666992188 2 504.263468 1006.51238 0.9901 0.00049927 -0.17901 -9.0269E-05 0.81108 0.000409 504.2633755649398 65.972 0.41506 65.981 65.768 66.183 0.0095596 53 20 4 0 0 0 0.010877 2 36121 36121;36224 77.984 41.94 1 22308000 74190 4302 49674 50740 86274;86275 86274 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2640380859375 2 504.263468 1006.51238 0.93317 0.00047056 0.41785 0.00021071 1.351 0.00068127 504.2635953108101 72.524 0.95724 66.348 65.919 66.877 -6.1757 118 48 3 0 0 0 0.010877 4 47483 47265;47375;47483;47603 77.984 41.94 1 395750000 74191 4302 49674 50740 86276;86277;86278;86279 86278 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 1006.522277832031 1 1007.51966 1006.51238 0.75794 0.00076364 -0.19707 -0.00019855 0.56087 0.00056509 1007.5195997396958 72.46 0.73669 66.285 65.941 66.678 -6.1757 100 37 3 0 0 0 0.14594 1 47506 47506 28.495 0.0076673 1 208550000 74192 4302 49674 50740 86280 86280 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 1007.51966 1006.51238 -0.12972 -0.0001307 -0.017382 -1.7513E-05 -0.14711 -0.00014821 1007.5198132100924 65.833 0.24075 65.833 65.718 65.959 0 -0.16372 0.00022432 NaN 28.495 22 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2267700 74193 4302 49674 50740 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1007.51966 1006.51238 0.054789 5.5201E-05 0.037126 3.7405E-05 0.091915 9.2606E-05 1007.5196352608715 66.389 0.44965 65.906 65.744 66.194 -0.48323 -0.09086 0.00027924 NaN 28.495 74 22 4 NaN NaN NaN NaN 0 NaN NaN 0 47718000 74194 4302 49674 50740 0.009386690402379827 VYGPLPQSF 9 Unmodified _VYGPLPQSF_ 0 0 0 ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1 ENST00000568339.5_1_16:85840315-85840477:+|nuORF ENST00000568339.5_1_16:85840315-85840477:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 1007.51966 1006.51238 1.2545 0.0012639 -0.81183 -0.00081793 0.44264 0.00044597 1007.5187696364867 65.954 0.33395 65.964 65.791 66.125 0.0095596 -0.033284 -0.0005761 NaN 28.495 41 16 3 NaN NaN NaN NaN 0 NaN NaN 0 17190000 74195 4302 49674 50740 0.009386690402379827 VYGPREGG 8 Unmodified _VYGPREGG_ 0 0 0 nc|ENSG00000033100|Q9P2E5-2|CHPF2;ENSG00000033100|ENST00000035307|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 nc|ENSG00000033100|Q9P2E5-2|CHPF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.5274963378906 2 417.70886 833.403166 -0.15023 -6.2754E-05 -1.0945 -0.00045716 -1.2447 -0.00051992 417.70889868838964 22.2 0.78835 22.223 21.982 22.771 0.022896 49 34 2 0 0 0 0.80722 1 11516 11516 2.3027 0 1 3686000 74196 598 49675 50741 86281 86281 -0.020199168592398564 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.263671875 2 486.263468 970.512382 0.18422 8.9578E-05 0.91232 0.00044363 1.0965 0.00053321 486.26394131057316 45.579 0.24441 45.579 45.46 45.704 0 23 12 3 0 0 0 0.062454 1 24855 24855 41.956 11.319 1 11862000 74197 6368 49676 50742 86282 86282 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2640075683594 2 486.263468 970.512382 0.23715 0.00011532 -0.30615 -0.00014887 -0.068994 -3.3549E-05 486.2632727922408 45.851 0.36043 45.527 45.357 45.717 -0.32425 58 20 4 0 0 0 0.011671 2 24459 24459;24567 75.761 23.492 1 233500000 74198 6368 49676 50742 86283;86284 86283 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2637329101562 2 486.263468 970.512382 0.27979 0.00013605 0.14365 6.985E-05 0.42343 0.0002059 486.2634939344801 45.521 0.38102 45.493 45.343 45.724 -0.028011 59 19 4 0 0 0 0.017075 2 24505 24405;24505 66.457 20.436 1 253770000 74199 6368 49676 50742 86285;86286 86286 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 486.26416015625 2 486.263468 970.512382 1.0641 0.00051743 -0.085754 -4.1699E-05 0.97835 0.00047573 486.26333677818405 50.88 0.63057 45.231 44.941 45.572 -5.649 130 38 5 0 0 0 0.017075 3 31805 31805;31931;32064 66.457 28.483 1 1460299999.9999998 74200 6368 49676 50742 86287;86288;86289 86287 0.025946690402406603 VYGSFASKL 9 Unmodified _VYGSFASKL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 971.5181884765625 1 971.519659 970.512382 0.77251 0.00075051 -0.011111 -1.0795E-05 0.7614 0.00073972 971.519244777867 50.931 0.39079 45.282 45.039 45.43 -5.649 38 23 2 0 0 0 0.0048194 2 32026 31897;32026 117.76 61.584 1 38919000 74201 6368 49676 50742 86290;86291 86291 0.025946690402406603 VYGSFGIFWY 10 Unmodified _VYGSFGIFWY_ 0 0 0 nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7;ENST00000598018.1_1_19:49936751-49940072:-|nuORF nc|ENSG00000104888|Q9P2U7-2|SLC17A7 nc|ENSG00000104888|Q9P2U7-2|SLC17A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.8689575195312 3 413.534209 1237.5808 1.3276 0.00054903 2.522 0.0010429 3.8496 0.001592 413.53377350188845 19.904 0.25387 17.247 17.133 17.387 -2.6564 35 14 4 0 0 0 0.66569 1 10580 10580 3.5871 0 1 2988700 74202 2253 49677 50743 86292 86292 -0.02849086379910659 VYGTLSDLL 9 Unmodified _VYGTLSDLL_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 980.5299072265625 1 980.529889 979.522613 0.57455 0.00056336 -0.065112 -6.3844E-05 0.50944 0.00049952 980.5301002919867 81.99 0.33157 81.494 81.342 81.674 -0.4952 27 12 3 0 0 0 0.18465 2 44843 44843;44945 24.674 7.7316 1 1897300 74203 2231 49678 50744 86293;86294 86293 0.03203231974816845 VYGTLSDLL 9 Unmodified _VYGTLSDLL_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.7715454101562 2 490.768583 979.522613 0.83887 0.00041169 1.2279 0.0006026 2.0667 0.0010143 490.7694178802966 82.045 0.287 81.55 81.342 81.629 -0.4952 24 10 3 0 0 0 0.18465 1 44897 44897 24.674 12.142 1 963040 74204 2231 49678 50744 86295 86295 0.03203231974816845 VYGTLSDLL 9 Unmodified _VYGTLSDLL_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7688903808594 2 490.768583 979.522613 1.0798 0.00052993 -1.3216 -0.0006486 -0.24181 -0.00011867 490.7683308187237 89.674 0.6982 83.498 83.22 83.918 -6.1757 63 38 2 0 0 0 0.027803 2 59278 59150;59278 56.541 20.497 1 15159000 74205 2231 49678 50744 86296;86297 86297 0.03203231974816845 VYGTLSDLL 9 Unmodified _VYGTLSDLL_ 0 0 0 ENSG00000104756|ENST00000221200|KCTD9;ENST00000521458.5_1_8:25298091-25315747:-|nuORF;ENST00000526766.1_1_11:112051504-112052349:+|nuORF ENSG00000104756|ENST00000221200|KCTD9 ENSG00000104756|ENST00000221200|KCTD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 980.5315551757812 1 980.529889 979.522613 1.0278 0.0010078 -0.069133 -6.7787E-05 0.95868 0.00094001 980.529991191131 89.617 0.48466 83.441 83.308 83.793 -6.1757 34 26 2 0 0 0 0.013472 2 59273 59153;59273 70.716 19.86 1 7550600 74206 2231 49678 50744 86298;86299 86299 0.03203231974816845 VYGVFSIAEF 10 Unmodified _VYGVFSIAEF_ 0 0 0 ENST00000497856.6_1_5:112228472-112256990:-|nuORF;nc|ENSG00000129625|Q00765-2|REEP5;ENSG00000129625|ENST00000379638|REEP5 ENST00000497856.6_1_5:112228472-112256990:-|nuORF ENST00000497856.6_1_5:112228472-112256990:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2899169921875 2 566.289682 1130.56481 0.63549 0.00035987 3.454 0.0019559 4.0895 0.0023158 566.291374860029 100.61 0.11412 94.436 94.374 94.488 -6.1757 17 7 3 0 0 0 0.30444 1 67309 67309 39.957 23.015 1 56078000 74207 4153 49679 50745 86300 86300 0.00475207383169618 VYGVSKETF 9 Unmodified _VYGVSKETF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2686767578125 2 515.266207 1028.51786 0.20598 0.00010613 1.0085 0.00051963 1.2145 0.00062577 515.2667608354969 37.41 0.2513 37.41 37.259 37.51 0 32 13 3 0 0 0 0.032796 1 19863 19863 53.833 23.196 1 18495000 74208 7171 49680 50746 86301 86301 0.004743478320278882 VYGVSKETF 9 Unmodified _VYGVSKETF_ 0 0 0 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 ENSG00000164292|ENST00000379982|RHOBTB3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 515.266207 1028.51786 -0.10648 -5.4864E-05 0.89909 0.00046327 0.79261 0.0004084 515.266819168893 37.753 0.19392 37.482 37.35 37.544 -0.27133 0.035834 -0.00010263 NaN 53.833 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1681700 74209 7171 49680 50746 0.004743478320278882 VYGVVPISL 9 Unmodified _VYGVVPISL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 946.5606689453125 1 946.560795 945.553519 0.41699 0.0003947 2.1151 0.0020021 2.5321 0.0023968 946.5630574429603 85.756 0.31888 85.254 85.127 85.446 -0.5015 32 13 3 0 0 0 0.078417 2 46899 46899;47002 38.151 24.643 1 1903600 74210 3224;607 49681 50747 86302;86303 86302 0.07856430079709753 VYGVVPISL 9 Unmodified _VYGVVPISL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.784423828125 2 473.784036 945.553519 0.59983 0.00028419 1.3893 0.00065824 1.9892 0.00094243 473.7846385731865 85.811 0.29461 85.31 85.127 85.422 -0.5015 21 12 2 0 0 0 0.10925 1 46934 46934 32.117 18.609 1 523930 74211 3224;607 49681 50747 86304 86304 0.07856430079709753 VYGVVPISL 9 Unmodified _VYGVVPISL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20221201_MKP_PDAC_01 4 946.5643310546875 1 946.560795 945.553519 0.41223 0.0003902 1.1309 0.0010704 1.5431 0.0014606 946.5618261984895 93.813 0.629 87.637 87.318 87.947 -6.1757 63 36 2 0 0 0 0.0088154 3 62064 61940;62064;62197 106.85 49.374 1 19129000 74212 3224;607 49681 50747 86305;86306;86307 86306 0.07856430079709753 VYGVVPISL 9 Unmodified _VYGVVPISL_ 0 0 0 nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000116514|Q6ZMZ0-2|RNF19B;ENSG00000116514|ENST00000235150|RNF19B;nc|ENSG00000116514|Q6ZMZ0|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A;nc|ENSG00000034677|Q9NV58-3|RNF19A;ENSG00000034677|ENST00000341084|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B;nc|ENSG00000034677|Q9NV58-2|RNF19A nc|ENSG00000116514|Q6ZMZ0-3|RNF19B MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.7842407226562 2 473.784036 945.553519 0.86207 0.00040844 0.32967 0.00015619 1.1917 0.00056463 473.7840760342529 93.81 0.41753 87.634 87.285 87.703 -6.1757 42 24 3 0 0 0 0.023761 1 62012 62012 59.795 23.329 1 10992000 74213 3224;607 49681 50747 86308 86308 0.07856430079709753 VYGWTQHKF 9 Unmodified _VYGWTQHKF_ 0 0 0 ENSG00000198270|ENST00000552374|TMEM116;ENST00000552801.6_1_12:112369427-112370497:-|nuORF;nc|ENSG00000198270|Q8NCL8|TMEM116;nc|ENSG00000198270|Q8NCL8-3|TMEM116 ENSG00000198270|ENST00000552374|TMEM116 ENSG00000198270|ENST00000552374|TMEM116 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.1974182128906 3 389.197819 1164.57163 -0.15311 -5.959E-05 0.090496 3.5221E-05 -0.062613 -2.4369E-05 389.19784635182685 37.65 0.22116 37.667 37.552 37.773 0.01704 25 10 3 0 0 0 0.094149 1 20010 20010 32.037 23.593 1 8721200 74214 10071 49682 50748 86309 86309 -0.004074349455777337 VYGYDLGGRF 10 Unmodified _VYGYDLGGRF_ 0 0 0 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 ENSG00000141639|ENST00000400384|MAPK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.8580932617188 3 382.857463 1145.55056 1.5733 0.00060234 -0.42005 -0.00016082 1.1532 0.00044152 382.8574998319972 35.98 0.64056 31.787 31.512 32.152 -4.1928 81 39 3 0 0 0 0.52888 1 20901 20901 12.873 5.8355 1 12322000 74215 5361 49683 50749 86310 86310 -0.016394450450889053 VYHADSLFH 9 Unmodified _VYHADSLFH_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.5103759765625 3 363.510174 1087.50869 -0.43397 -0.00015775 0.43874 0.00015949 0.0047713 1.7344E-06 363.5104062222759 33.346 0.27238 33.346 33.183 33.455 0 39 13 4 0 0 0 0.39863 1 17449 17449 8.1555 0.54658 1 14137000 74216 9832 49684 50750 86311 86311 -0.031560007336111084 VYHADSLFH 9 Unmodified _VYHADSLFH_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5107116699219 3 363.510174 1087.50869 -0.27062 -9.8373E-05 1.3503 0.00049084 1.0797 0.00039247 363.5106759862617 33.47 0.28856 33.311 33.171 33.459 -0.15918 33 11 4 0 0 0 0.28047 1 17475 17475 12.241 4.6317 1 5342200 74217 9832 49684 50750 86312 86312 -0.031560007336111084 VYHADSLFH 9 Unmodified _VYHADSLFH_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5103454589844 3 363.510174 1087.50869 0.48243 0.00017537 0.54725 0.00019893 1.0297 0.0003743 363.5103357126787 40.365 0.25678 40.068 39.942 40.199 -0.29716 23 11 3 0 0 0 0.28047 1 21348 21348 12.241 4.6317 1 3055900 74218 9832 49684 50750 86313 86313 -0.031560007336111084 VYHADSLFH 9 Unmodified _VYHADSLFH_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.510174 1087.50869 0.29167 0.00010603 -0.52498 -0.00019084 -0.2333 -8.4809E-05 363.5102025030223 39.988 0.068272 39.993 39.936 40.004 0.0050545 -0.037138 -0.0010575 NaN 12.241 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 706520 74219 9832 49684 50750 -0.031560007336111084 VYHADSLFH 9 Unmodified _VYHADSLFH_ 0 0 0 nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ENSG00000196510|ENST00000455511|ANAPC7;ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF nc|ENSG00000196510|Q9UJX3-2|ANAPC7 nc|ENSG00000196510|Q9UJX3-2|ANAPC7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 363.510174 1087.50869 -0.06003 -2.1822E-05 0.80013 0.00029086 0.7401 0.00026903 363.5103949401259 33.244 0.19838 33.273 33.163 33.361 0.028934 -0.036952 -8.4581E-05 NaN 12.241 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1036600 74220 9832 49684 50750 -0.031560007336111084 VYHAITKH 8 Unmodified _VYHAITKH_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MSMS AL20221201_MKP_PDAC_01 4 484.7695617675781 2 484.769252 967.52395 NaN NaN NaN NaN NaN NaN NaN 37.46 1 33.176 32.676 33.676 -4.2835 0 0 0 0.4637 1 21988 21988 44.407 3.9584 1 74221 5575 49685 50751 86314 86314 0.038889108542207396 VYHALNPKL 9 Unmodified _VYHALNPKL_ 0 0 0 ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.2064819335938 3 352.206315 1053.59712 1.3315 0.00046897 0.86788 0.00030567 2.1994 0.00077464 352.2064886527159 36.664 0.41402 32.381 32.143 32.557 -4.2835 32 25 2 0 0 0 0.13231 1 21365 21365 29.841 16.226 1 9970100 74222 2443;14158 49686 50752 86315 86315 0.07246039576853036 VYHALNPKL 9 Unmodified _VYHALNPKL_ 0 0 0 ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248;ENST00000484751.1_1_7:66410067-66416200:+|nuORF ENSG00000106609|ENST00000341567|TMEM248 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 352.206315 1053.59712 -0.27961 -9.848E-05 0.94353 0.00033232 0.66393 0.00023384 352.20685036674536 32.798 0.2162 32.639 32.546 32.762 -0.15919 0.12919 6.3739E-05 NaN 29.841 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2697300 74223 2443;14158 49686 50752 0.07246039576853036 VYHCWHYF 8 Unmodified _VYHCWHYF_ 0 0 0 ENSG00000100485|ENST00000216373|SOS2 ENSG00000100485|ENST00000216373|SOS2 ENSG00000100485|ENST00000216373|SOS2 MSMS AL20221201_MKP_PDAC_01 4 577.7454223632812 2 577.747462 1153.48037 NaN NaN NaN NaN NaN NaN NaN 93.788 1 87.612 87.112 88.112 -6.1757 0 0 0 0.94749 1 62097 62097 11.114 2.5212 1 74224 1835 49687 50753 86316 86316 -0.09023021914572382 VYHDAISLYF 10 Unmodified _VYHDAISLYF_ 0 0 0 REV__ENSG00000170275|ENST00000320954|CRTAP REV__ENSG00000170275|ENST00000320954|CRTAP MSMS AL20221201_MKP_PDAC_01 4 409.8725280761719 3 409.873001 1226.59717 NaN NaN NaN NaN NaN NaN NaN 46.535 1 41.454 40.954 41.954 -5.0805 0 0 0 0.84946 1 28771 28771 10.151 2.5416 1 + 74225 22466 49688 50754 86317 86317 -0.007060052138058381 VYHGWLFEG 9 Unmodified _VYHGWLFEG_ 0 0 0 ENST00000523224.5_1_8:134059955-134072405:-|nuORF;nc|ENSG00000155926|Q13239-4|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA ENST00000523224.5_1_8:134059955-134072405:-|nuORF ENST00000523224.5_1_8:134059955-134072405:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.8464660644531 3 369.846787 1106.51853 -1.158 -0.00042829 1.6632 0.00061515 0.50523 0.00018686 369.8472958836061 32.609 0.15215 32.609 32.561 32.714 0 9 7 2 0 0 0 0.39863 1 17067 17067 8.1555 1.9637 1 1359900 74226 6418 49689 50755 86318 86318 -0.030468127282347268 VYHHTFFEM 9 Oxidation (M) _VYHHTFFEM(Oxidation (M))_ VYHHTFFEM(1) VYHHTFFEM(71) 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.7686157226562 2 613.768591 1225.52263 -0.1771 -0.0001087 0.49769 0.00030547 0.32059 0.00019677 613.7688396912843 34.692 0.14656 34.5 34.46 34.606 -0.19132 10 6 2 0 0 0 0.013472 1 18160 18160 70.716 52.569 1 2532600 74227 1569 49690 50756 86319 86319 267 -0.08111091296837003 VYHHTFFEM 9 Oxidation (M) _VYHHTFFEM(Oxidation (M))_ VYHHTFFEM(1) VYHHTFFEM(89) 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MSMS AL20221201_MKP_PDAC_01 4 613.7698364257812 2 613.768591 1225.52263 NaN NaN NaN NaN NaN NaN NaN 38.386 1 34.017 33.517 34.517 -4.3689 0 0 0 0.011967 1 22637 22637 89.427 64.753 1 74228 1569 49690 50756 86320 86320 267 -0.08111091296837003 VYHHTFFEM 9 Oxidation (M) _VYHHTFFEM(Oxidation (M))_ 0 0 1 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 613.768591 1225.52263 0.37254 0.00022865 -1.2242 -0.00075135 -0.85162 -0.0005227 614.2692647033055 34.459 0.16953 34.486 34.391 34.561 0.027401 -0.0070995 -0.0014821 NaN 70.716 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 594340 74229 1569 49690 50756 267 -0.08111091296837003 VYHILKVLF 9 Unmodified _VYHILKVLF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.9024353027344 3 377.902344 1130.6852 0.25168 9.511E-05 0.08935 3.3766E-05 0.34103 0.00012888 377.90226660025985 69.934 0.56637 69.965 69.765 70.331 0.030914 86 28 5 0 0 0 0.038285 2 38410 38410;38522 45.7 33.459 1 119800000 74230 1017 49691 50757 86321;86322 86321 0.1250866016746386 VYHILKVLF 9 Unmodified _VYHILKVLF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.9028625488281 3 377.902344 1130.6852 1.0968 0.0004145 0.41778 0.00015788 1.5146 0.00057238 377.90245643473366 99.104 0.18653 92.929 92.841 93.028 -6.1757 34 10 4 0 0 0 0.026094 1 65874 65874 43.772 27.623 1 290470000 74231 1017 49691 50757 86323 86323 0.1250866016746386 VYHILKVLF 9 Unmodified _VYHILKVLF_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.3502197265625 2 566.349877 1130.6852 0.764 0.00043269 -0.70425 -0.00039885 0.059756 3.3843E-05 566.3498847636865 99.111 0.16729 92.936 92.841 93.009 -6.1757 30 9 4 0 0 0 0.012148 1 65880 65880 74.423 42.117 1 175290000 74232 1017 49691 50757 86324 86324 0.1250866016746386 VYHIMLQII 9 Oxidation (M) _VYHIM(Oxidation (M))LQII_ VYHIM(1)LQII VYHIM(50)LQII 0 0 1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3236694335938 2 573.323002 1144.63145 0.30243 0.00017339 0.9308 0.00053365 1.2332 0.00070704 573.3236903709341 74.381 0.45494 74.426 74.16 74.615 0.044319 47 19 3 0 0 0 0.040472 2 41040 40938;41040 49.669 17.552 1 5493000 74233 9424 49692 50758 86325;86326 86326 1553 0.06492119673430352 VYHIMLQII 9 Unmodified _VYHIMLQII_ 0 0 0 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 ENSG00000185885|ENST00000408968|IFITM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.326171875 2 565.325545 1128.63654 1.2748 0.00072068 -0.31547 -0.00017834 0.95934 0.00054234 565.325557881424 98.466 0.17489 92.29 92.19 92.365 -6.1757 33 11 5 0 0 0 0.05447 1 65305 65305 40.449 0.49126 1 45378000 74234 9424 49692 50759 86327 86327 0.0773642353606192 VYHKPPNAF 9 Unmodified _VYHKPPNAF_ 0 0 0 nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1;ENST00000588116.1_1_17:33977635-33977996:+|nuORF nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 358.1912536621094 3 358.190665 1071.55016 8.0132E-05 2.8703E-08 -0.39586 -0.00014179 -0.39578 -0.00014177 358.19053178002275 23.596 0.37808 23.608 23.455 23.833 0.012396 29 17 2 0 0 0 0.28047 1 12110 12110 17.113 10.921 1 3378700 74235 329 49693 50760 86328 86328 0.01725180025687223 VYHLHIHVL 9 Unmodified _VYHLHIHVL_ 0 0 0 ENST00000474908.5_1_9:35813053-35813759:-|nuORF;ENSG00000137133|ENST00000259667|HINT2;ENST00000474848.6_1_9:35813053-35815141:-|nuORF ENST00000474908.5_1_9:35813053-35813759:-|nuORF ENST00000474908.5_1_9:35813053-35813759:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5538635253906 3 377.553826 1129.63965 0.014758 5.572E-06 0.48245 0.00018215 0.49721 0.00018772 377.55409724313756 45.343 0.17639 45.315 45.185 45.362 -0.028015 13 8 2 0 0 0 0.010877 1 24335 24335 77.984 66.49 1 9752300 74236 4901 49694 50761 86329 86329 0.08001434705079191 VYHLNKYY 8 Unmodified _VYHLNKYY_ 0 0 0 ENSG00000180660|ENST00000379919|MAB21L1 ENSG00000180660|ENST00000379919|MAB21L1 ENSG00000180660|ENST00000379919|MAB21L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.815673828125 2 550.282192 1098.54983 0.63543 0.00034966 -3.2806 -0.0018053 -2.6452 -0.0014556 550.2803402860395 43.698 0.30749 38.933 38.677 38.985 -4.7648 32 18 2 0 0 0 8.7369 1 26412 26412 28.173 6.4266 1 8435500 74237 8917 49695 50762 86330 86330 0.004497603058325694 VYHLNRHKL 9 Unmodified _VYHLNRHKL_ 0 0 0 nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000103495|P56270-3|MAZ;ENSG00000136451|ENST00000581208|VEZF1 nc|ENSG00000103495|P56270-3|MAZ MSMS AL20221201_MKP_PDAC_01 4 393.896484375 3 393.896363 1178.66726 NaN NaN NaN NaN NaN NaN NaN 18.157 1 15.536 15.036 16.036 -2.6215 0 0 0 0.65645 1 9548 9548 10.8 4.9314 1 74238 2146;4822;16081 49696 50763 86331 86331 0.0850733796530676 VYHLRRLAE 9 Unmodified _VYHLRRLAE_ 0 0 0 REV__ENSG00000104951|ENST00000391826|IL4I1 REV__ENSG00000104951|ENST00000391826|IL4I1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2256774902344 3 386.224368 1155.65128 0.55518 0.00021443 1.0239 0.00039544 1.579 0.00060986 386.22480090104307 15.468 0.20446 12.94 12.824 13.029 -2.5273 121 45 3 0 0 0 0.4887 1 7986 7986 8.1555 0.54658 1 14195000 + 74239 18390 49697 50764 86332 86332 0.07967631728433844 VYHNHIFWTL 10 Unmodified _VYHNHIFWTL_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 443.8958435058594 3 443.89614 1328.66659 1.2009 0.00053307 -0.58002 -0.00025747 0.62086 0.0002756 443.8957539268489 94.694 0.18392 88.518 88.426 88.61 -6.1757 18 10 2 0 0 0 0.16524 1 62720 62720 26.021 14.503 1 11489000 74240 5783 49698 50765 86333 86333 0.015404985256282089 VYHNHIFWTL 10 Unmodified _VYHNHIFWTL_ 0 0 0 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 665.3396606445312 2 665.340572 1328.66659 0.75172 0.00050015 -1.0401 -0.00069201 -0.28836 -0.00019186 665.3399883021659 94.671 0.0998 88.495 88.445 88.545 -6.1757 8 5 2 0 0 0 0.013171 1 62733 62733 81.89 41.933 1 6027600 74241 5783 49698 50765 86334 86334 0.015404985256282089 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2137756347656 3 367.213469 1098.61858 -0.26696 -9.803E-05 1.1297 0.00041485 0.86278 0.00031682 367.21386986320266 33.606 0.30269 33.447 33.27 33.573 -0.15918 22 12 2 0 0 0 0.029718 1 17486 17486 55.503 33.966 1 25852000 74242 1135 49699 50766 86335 86335 0.07321424605561333 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.3174438476562 2 550.316566 1098.61858 -0.23165 -0.00012748 1.2699 0.00069886 1.0383 0.00057138 550.3172648299728 33.572 0.26027 33.413 33.27 33.531 -0.15918 18 10 2 0 0 0 0.01958 1 17504 17504 61.357 32.276 1 3672000 74243 1135 49699 50766 86336 86336 0.07321424605561333 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.2136840820312 3 367.213469 1098.61858 -0.030924 -1.1356E-05 0.29434 0.00010809 0.26342 9.6731E-05 367.21359147886625 33.328 0.29505 33.357 33.208 33.503 0.028934 22 12 2 0 0 0 0.017075 1 17506 17506 66.457 37.02 1 22225000 74244 1135 49699 50766 86337 86337 0.07321424605561333 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.3170166015625 2 550.316566 1098.61858 0.042693 2.3495E-05 -0.0517 -2.8452E-05 -0.0090075 -4.957E-06 550.3165276825046 33.345 0.20592 33.374 33.231 33.437 0.028934 21 8 3 0 0 0 0.0090524 1 17509 17509 85.357 53.24 1 3719900 74245 1135 49699 50766 86338 86338 0.07321424605561333 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3170776367188 2 550.316566 1098.61858 1.184 0.00065155 -0.27054 -0.00014888 0.91342 0.00050267 550.31639484253 37.442 0.43225 33.159 32.923 33.355 -4.2835 46 25 2 0 0 0 0.0038489 2 22018 21896;22018 125.62 78.704 1 57323000 74246 1135 49699 50766 86339;86340 86340 0.07321424605561333 VYHNLKNVI 9 Unmodified _VYHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2138366699219 3 367.213469 1098.61858 1.8489 0.00067896 0.00095894 3.5214E-07 1.8499 0.00067931 367.21320449936593 37.431 0.82188 33.148 32.765 33.587 -4.2835 186 49 7 0 0 0 0.011671 2 21937 21937;22052 75.761 55.774 1 271140000 74247 1135 49699 50766 86341;86342 86341 0.07321424605561333 VYHPSFDKK 9 Unmodified _VYHPSFDKK_ 0 0 0 REV__ENSG00000116539|ENST00000392403|ASH1L REV__ENSG00000116539|ENST00000392403|ASH1L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.179931640625 3 374.197708 1119.57129 0.44198 0.00016539 -0.81479 -0.00030489 -0.37281 -0.0001395 374.1973553193928 30.77 0.24446 30.667 30.548 30.792 -0.10269 25 9 4 0 0 0 0.21404 1 15998 15998 5.2969 1.4206 1 5809000 + 74248 19045 49700 50767 86343 86343 0.01629145334572968 VYHQAQYGYL 10 Unmodified _VYHQAQYGYL_ 0 0 0 REV__ENSG00000157150|ENST00000287814|TIMP4 REV__ENSG00000157150|ENST00000287814|TIMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5365905761719 3 414.536501 1240.58767 -0.091979 -3.8129E-05 -0.19568 -8.1115E-05 -0.28766 -0.00011924 414.5364270875479 16.92 0.32728 16.925 16.772 17.099 0.0050564 73 31 3 0 0 0 0.70895 1 8455 8455 1.9064 0.062138 1 2067200 + 74249 21367 49701 50768 86344 86344 -0.022997734993168706 VYHSGVPIF 9 Unmodified _VYHSGVPIF_ 0 0 0 nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1;ENST00000582850.1_1_18:2945885-2946149:-|nuORF nc|ENSG00000110172|Q9UHD1-2|CHORDC1 nc|ENSG00000110172|Q9UHD1-2|CHORDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.772216796875 2 509.77146 1017.52837 -0.29967 -0.00015276 0.48464 0.00024706 0.18497 9.4291E-05 509.7715318452403 56.862 0.21385 56.376 56.265 56.479 -0.48554 15 9 2 0 0 0 0.39863 1 30894 30894 12.532 1.7076 1 1384400 74250 2706 49702 50769 86345 86345 0.020303752771383188 VYHSSFHRY 9 Unmodified _VYHSSFHRY_ 0 0 0 ENST00000610253.5_1_11:108058836-108093299:-|nuORF;ENST00000278612.8_1_11:108058836-108062880:-|nuORF ENST00000610253.5_1_11:108058836-108093299:-|nuORF ENST00000610253.5_1_11:108058836-108093299:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.289306640625 2 598.285797 1194.55704 0.26157 0.00015649 0.56456 0.00033777 0.82613 0.00049426 598.286459314546 66.625 0.41412 66.142 65.88 66.294 -0.48323 43 19 4 0 0 0 0.1773 1 36378 36378 25.399 1.3787 1 3232500 74251 15889 49703 50770 86346 86346 -0.032455070937203345 VYHSSFHRY 9 Unmodified _VYHSSFHRY_ 0 0 0 ENST00000610253.5_1_11:108058836-108093299:-|nuORF;ENST00000278612.8_1_11:108058836-108062880:-|nuORF ENST00000610253.5_1_11:108058836-108093299:-|nuORF ENST00000610253.5_1_11:108058836-108093299:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 598.285797 1194.55704 0.062953 3.7664E-05 0.026973 1.6137E-05 0.089926 5.3801E-05 598.2861462441409 66.036 0.27089 66.036 65.864 66.135 0 -0.052862 -0.00023175 NaN 25.399 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2411700 74252 15889 49703 50770 -0.032455070937203345 VYHSTPSDL 9 Unmodified _VYHSTPSDL_ 0 0 0 nc|ENSG00000185504|Q0VG06-3|FAAP100;ENSG00000185504|ENST00000327787|FAAP100 nc|ENSG00000185504|Q0VG06-3|FAAP100 nc|ENSG00000185504|Q0VG06-3|FAAP100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7483215332031 2 509.745639 1017.47673 0.17442 8.8908E-05 -4.4443 -0.0022655 -4.2699 -0.0021766 509.74201324081173 75.953 0.15942 75.476 75.437 75.596 -0.47714 9 6 2 0 0 0 0.30562 2 41577 41577;41614 16.942 2.3606 1 1828900 74253 9378 49704 50771 86347;86348 86347 -0.0313141320741579 VYHSYDLPWF 10 Unmodified _VYHSYDLPWF_ 0 0 0 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;ENSG00000163624|ENST00000295887|CDS1 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.8125610351562 2 663.811313 1325.60807 0.73075 0.00048508 -0.12326 -8.1822E-05 0.60749 0.00040326 664.3130704375427 83.275 0.28243 83.338 83.157 83.439 0.063171 25 10 3 0 0 0 0.10406 1 46044 46044 54.774 43.133 1 6132200 74254 7031;1940 49705 50772 86349 86349 -0.04170602839531057 VYHSYDLPWF 10 Unmodified _VYHSYDLPWF_ 0 0 0 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;ENSG00000163624|ENST00000295887|CDS1 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.8130493164062 2 663.811313 1325.60807 1.1843 0.00078615 -0.49416 -0.00032803 0.69013 0.00045812 663.8091174069858 98.303 0.14875 92.128 92.072 92.221 -6.1757 14 9 2 0 0 0 0.1899 1 65192 65192 42.095 30.454 1 113340000 74255 7031;1940 49705 50772 86350 86350 -0.04170602839531057 VYHTIYETF 9 Unmodified _VYHTIYETF_ 0 0 0 ENSG00000077616|ENST00000534061|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2884521484375 2 586.784764 1171.55498 0.62123 0.00036453 0.65921 0.00038681 1.2804 0.00075134 586.7847906414 73.829 0.38286 73.354 73.166 73.549 -0.47588 29 18 2 0 0 0 0.53666 1 40378 40378 5.2307 0 1 1100300 74256 1223 49706 50773 86351 86351 -0.02393980622196068 VYHVHLHVL 9 Unmodified _VYHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8818664550781 3 372.881943 1115.624 -0.035129 -1.3099E-05 0.123 4.5866E-05 0.087875 3.2767E-05 372.8819648839113 39.688 0.39446 39.391 39.175 39.569 -0.29716 43 17 3 0 0 0 0.01018 1 20894 20894 67.344 51.195 1 21053000 74257 7885 49707 50774 86352 86352 0.07081148188035513 VYHVHLHVL 9 Unmodified _VYHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.8824157714844 3 372.881943 1115.624 0.231 8.6136E-05 0.76591 0.00028559 0.99691 0.00037173 372.8820714748992 39.322 0.42241 39.333 39.106 39.528 0.011452 63 19 5 0 0 0 0.01018 2 20873 20873;20977 67.344 50.231 1 63459000 74258 7885 49707 50774 86353;86354 86353 0.07081148188035513 VYHVHLHVL 9 Unmodified _VYHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8822631835938 3 372.881943 1115.624 1.0708 0.00039929 0.12366 4.611E-05 1.1945 0.0004454 372.8818656837922 44.171 0.33914 39.319 39.147 39.486 -4.852 41 24 2 0 0 0 0.01018 2 26878 26878;27011 57.471 45.977 1 28069000 74259 7885 49707 50774 86355;86356 86355 0.07081148188035513 VYHVHLHVL 9 Unmodified _VYHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8821716308594 3 372.881943 1115.624 1.6312 0.00060826 -0.195 -7.2714E-05 1.4362 0.00053555 372.8818731580284 86.006 0.75581 79.83 79.547 80.303 -6.1757 127 41 4 0 0 0 0.0079702 4 56519 56519;56655;56787;56913 77.984 61.835 1 100290000 74260 7885 49707 50774 86357;86358;86359;86360 86357 0.07081148188035513 VYHVHLHVL 9 Unmodified _VYHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.8197021484375 2 558.819276 1115.624 1.221 0.00068234 -1.5004 -0.00083846 -0.27938 -0.00015612 558.8184059656811 85.954 0.37544 79.778 79.581 79.957 -6.1757 35 20 2 0 0 0 0.00034677 2 56598 56598;56754 147.33 118.84 1 18869000 74261 7885 49707 50774 86361;86362 86361 0.07081148188035513 VYIAGQQAF 9 Unmodified _VYIAGQQAF_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.7614440917969 2 498.761092 995.507631 0.45207 0.00022547 -0.86816 -0.000433 -0.41609 -0.00020753 498.7606906325639 52.826 0.26064 52.826 52.678 52.938 0 14 11 2 0 0 0 0.095049 1 29265 29265 34.187 19.606 1 2956000 74262 5564 49708 50775 86363 86363 0.009697848974724366 VYIAGQQAF 9 Unmodified _VYIAGQQAF_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL;nc|ENSG00000143889|Q8WVV9-3|HNRNPLL;nc|ENSG00000143889|Q8WVV9-2|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7612915039062 2 498.761092 995.507631 0.30212 0.00015068 0.13043 6.5055E-05 0.43255 0.00021574 498.7611544392872 53.416 0.26473 52.964 52.823 53.087 -0.45173 40 12 4 0 0 0 0.019979 1 28873 28873 63.563 23.606 1 6986300 74263 5564 49708 50775 86364 86364 0.009697848974724366 VYIAWHRYF 9 Unmodified _VYIAWHRYF_ 0 0 0 REV__ENSG00000176485|ENST00000415826|PLAAT3 REV__ENSG00000176485|ENST00000415826|PLAAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.8858947753906 3 418.885464 1253.63456 -0.20586 -8.6232E-05 0.036201 1.5164E-05 -0.16966 -7.1068E-05 418.8856595915781 35.903 0.18443 35.928 35.806 35.99 0.024971 19 8 3 0 0 0 0.57331 1 19003 19003 2.9952 0.15196 1 1569500 + 74264 22933 49709 50776 86365 86365 0.017891308424395902 VYIAWHRYF 9 Unmodified _VYIAWHRYF_ 0 0 0 REV__ENSG00000176485|ENST00000415826|PLAAT3 REV__ENSG00000176485|ENST00000415826|PLAAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.2531433105469 3 418.885464 1253.63456 -0.20586 -8.6232E-05 0.036201 1.5164E-05 -0.16966 -7.1068E-05 418.8856595915781 35.903 0.18443 35.928 35.806 35.99 0.024971 19 8 3 0 0 0 0.21302 1 18973 18973 5.7319 1.0159 1 1569500 + 74265 22933 49709 50776 86366 86366 0.017891308424395902 VYICTCRNL 9 2 Carbamidomethyl (C) _VYIC(Carbamidomethyl (C))TC(Carbamidomethyl (C))RNL_ VYIC(1)TC(1)RNL VYIC(83)TC(83)RNL 0 2 0 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 ENSG00000142798|ENST00000374695|HSPG2 MSMS AL20221201_MKP_PDAC_01 4 599.7885131835938 2 599.789001 1197.56345 NaN NaN NaN NaN NaN NaN NaN 43.305 1 38.54 38.04 39.04 -4.7648 0 0 0 0.016974 1 26286 26286 82.529 22.455 1 74266 5448 49710 50777 86367 86367 558;559 -0.02743073248871042 VYIDKVRSL 9 Unmodified _VYIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.824462890625 2 546.824224 1091.63389 -0.23261 -0.00012719 0.68765 0.00037603 0.45505 0.00024883 546.8243693752141 37.566 0.26474 37.294 37.157 37.422 -0.27133 23 10 3 0 0 0 0.036857 1 19718 19718 51.63 11.672 1 7047700 74267 2962 49711 50778 86368 86368 0.09174291402769086 VYIDKVRSL 9 Unmodified _VYIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.8854064941406 3 364.885241 1091.63389 -0.11395 -4.1577E-05 1.0431 0.00038061 0.92916 0.00033904 364.88549748943467 37.569 0.35514 37.298 37.067 37.422 -0.27133 37 14 4 0 0 0 0.13231 1 19727 19727 22.775 9.9024 1 49398000 74268 2962 49711 50778 86369 86369 0.09174291402769086 VYIDKVRSL 9 Unmodified _VYIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.8851623535156 3 364.885241 1091.63389 1.3358 0.00048743 -0.27463 -0.00010021 1.0612 0.00038722 364.8850982874216 42.184 0.64655 37.499 37.186 37.832 -4.6846 119 41 4 0 0 0 0.085319 3 25321 25321;25461;25603 34.222 14.596 1 390500000 74269 2962 49711 50778 86370;86371;86372 86370 0.09174291402769086 VYIDKVRSL 9 Unmodified _VYIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.8242797851562 2 546.824224 1091.63389 0.59959 0.00032787 -0.62526 -0.00034191 -0.025671 -1.4038E-05 546.8236927467178 42.182 0.47652 37.497 37.217 37.693 -4.6846 72 29 3 0 0 0 0.05483 2 25462 25323;25462 43.772 14.691 1 82302000 74270 2962 49711 50778 86373;86374 86374 0.09174291402769086 VYIDPREHYV 10 Unmodified _VYIDPREHYV_ 0 0 0 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 nc|ENSG00000177707|Q9NQS3-3|NECTIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8880004882812 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 51.957 1 51.957 51.457 52.457 0 0 0 0 0.96627 1 28730 28730 2.086 0.63089 1 74271 16408 49712 50779 86375 86375 0.007201845634881465 VYIDQTMVL 9 Oxidation (M) _VYIDQTM(Oxidation (M))VL_ VYIDQTM(1)VL VYIDQTM(52)VL 0 0 1 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.281982421875 2 549.281 1096.54745 0.38135 0.00020947 -0.17219 -9.4581E-05 0.20915 0.00011488 549.2809960962721 58.973 0.60882 58.973 58.56 59.169 0 66 26 4 0 0 0 0.03568 1 32813 32813 52.268 16.224 1 23237000 74272 3053 49713 50780 86376 86376 528 0.003035437858898149 VYIDQTMVL 9 Oxidation (M) _VYIDQTM(Oxidation (M))VL_ VYIDQTM(1)VL VYIDQTM(46)VL 0 0 1 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.28271484375 2 549.281 1096.54745 0.54419 0.00029892 -0.031914 -1.753E-05 0.51228 0.00028139 549.2808934531638 59.539 0.36061 59.539 59.355 59.716 0 37 15 3 0 0 0 0.047196 1 33123 33123 46.021 24.274 1 13700000 74273 3053 49713 50780 86377 86377 528 0.003035437858898149 VYIDQTMVL 9 Oxidation (M) _VYIDQTM(Oxidation (M))VL_ VYIDQTM(1)VL VYIDQTM(55)VL 0 0 1 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2815551757812 2 549.281 1096.54745 0.29908 0.00016428 0.58468 0.00032115 0.88376 0.00048543 549.28133390832 59.546 0.35925 59.055 58.855 59.214 -0.49079 35 16 3 0 0 0 0.031062 1 32381 32381 54.774 18.729 1 6070900 74274 3053 49713 50780 86378 86378 528 0.003035437858898149 VYIDQTMVL 9 Oxidation (M) _VYIDQTM(Oxidation (M))VL_ VYIDQTM(1)VL VYIDQTM(61)VL 0 0 1 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.28125 2 549.281 1096.54745 0.58625 0.00032202 0.87784 0.00048218 1.4641 0.0008042 549.2817833425205 67.65 0.61732 61.475 61.199 61.816 -6.1757 59 35 2 0 0 0 0.022193 1 43982 43982 61.357 21.4 1 40179000 74275 3053 49713 50780 86379 86379 528 0.003035437858898149 VYIDQTMVL 9 Unmodified _VYIDQTMVL_ 0 0 0 nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-3|SCAP nc|ENSG00000114650|Q12770-4|SCAP nc|ENSG00000114650|Q12770-4|SCAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 541.2843627929688 2 541.283543 1080.55253 0.85557 0.0004631 0.41302 0.00022356 1.2686 0.00068667 541.2838115789831 81.157 0.64526 74.982 74.679 75.324 -6.1757 91 36 3 0 0 0 0.078314 2 53243 53117;53243 42.095 17.421 1 68311000 74276 3053 49713 50781 86380;86381 86381 0.015478476485213832 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.2203674316406 3 374.220624 1119.64004 0.01705 6.3805E-06 -0.014299 -5.3511E-06 0.0027508 1.0294E-06 374.22060125251284 37.516 0.33324 37.516 37.369 37.702 0 52 17 4 0 0 0 0.11784 2 19923 19923;20035 23.801 14.257 1 42900000 74277 6753 49714 50782 86382;86383 86382 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8270874023438 2 560.827298 1119.64004 0.31671 0.00017762 -0.10002 -5.6096E-05 0.21669 0.00012153 560.8270948061654 37.528 0.20047 37.528 37.444 37.645 0 21 10 3 0 0 0 0.14 1 19966 19966 29.082 14.5 1 5228900 74278 6753 49714 50782 86384 86384 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.220703125 3 374.220624 1119.64004 -0.0041883 -1.5674E-06 -0.7288 -0.00027273 -0.73299 -0.0002743 374.2203425720726 37.861 0.462 37.589 37.4 37.862 -0.27133 80 22 5 0 0 0 0.047788 2 19857 19857;19961 35.612 23.354 1 655040000 74279 6753 49714 50782 86385;86386 86385 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8270263671875 2 560.827298 1119.64004 0.18544 0.000104 -0.39331 -0.00022058 -0.20787 -0.00011658 560.8270092949032 37.855 0.27831 37.583 37.44 37.719 -0.27133 43 13 4 0 0 0 0.021948 1 19872 19872 61.602 36.203 1 53205000 74280 6753 49714 50782 86387 86387 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1799926757812 3 374.220624 1119.64004 0.52791 0.00019756 -0.5422 -0.0002029 -0.014287 -5.3465E-06 374.22012362118545 40.426 0.19133 40.129 40.008 40.199 -0.29716 14 8 3 0 0 0 0.20883 1 21392 21392 8.1555 1.0538 1 1443100 74281 6753 49714 50782 86388 86388 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2211303710938 3 374.220624 1119.64004 -0.13543 -5.068E-05 0.077209 2.8893E-05 -0.05822 -2.1787E-05 374.2206055583042 37.472 0.38666 37.493 37.327 37.714 0.021545 68 18 5 0 0 0 0.017075 2 19855 19855;19961 53.317 33.955 1 277650000 74282 6753 49714 50782 86389;86390 86389 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8286743164062 2 560.827298 1119.64004 0.31945 0.00017916 1.06 0.00059449 1.3795 0.00077364 560.8278758617179 37.479 0.22142 37.498 37.373 37.595 0.019783 31 10 4 0 0 0 0.062454 1 19880 19880 41.956 27.117 1 21719000 74283 6753 49714 50782 86391 86391 0.08500809634278994 VYIDRVRSL 9 Unmodified _VYIDRVRSL_ 0 0 0 nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA nc|ENSG00000160789|P02545-2|LMNA nc|ENSG00000160789|P02545-2|LMNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.8289184570312 2 560.827298 1119.64004 1.1603 0.00065072 0.1656 9.2871E-05 1.3259 0.00074359 560.8274934978972 42.486 0.80217 37.802 37.521 38.323 -4.6846 155 52 5 0 0 0 0.022461 3 25845 25579;25711;25845 61.09 35.691 1 594880000 74284 6753 49714 50782 86392;86393;86394 86394 0.08500809634278994 VYIDSMGYAF 10 Unmodified _VYIDSMGYAF_ 0 0 0 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant;ENSG00000253710|ENST00000521508|ALG11 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2590942382812 2 583.26535 1164.51615 NaN NaN NaN NaN NaN NaN NaN 41.85 1 41.85 41.35 42.35 0 0 0 0 0.61917 1 22613 22613 20.454 5.6154 1 74285 14 49715 50783 86395 86395 -0.059530292482122604 VYIDTESAF 9 Unmodified _VYIDTESAF_ 0 0 0 ENST00000553595.5_1_14:68331761-69149671:+|nuORF;nc|ENSG00000182185|O15315-5|RAD51B;nc|ENSG00000182185|O15315-1|RAD51B;ENSG00000182185|ENST00000471583|RAD51B;nc|ENSG00000182185|O15315-4|RAD51B;nc|ENSG00000182185|O15315|RAD51B ENST00000553595.5_1_14:68331761-69149671:+|nuORF ENST00000553595.5_1_14:68331761-69149671:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7481689453125 2 522.747847 1043.48114 0.7643 0.00039953 -0.12371 -6.4668E-05 0.64059 0.00033487 522.7473820996935 57.506 0.20731 57.506 57.346 57.554 0 15 8 3 0 0 0 0.2001 1 31993 31993 23.148 7.3012 1 1990600 74286 9029 49716 50784 86396 86396 -0.03885948784522952 VYIEAAIRF 9 Unmodified _VYIEAAIRF_ 0 0 0 ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1 ENST00000470035.1_1_1:25780757-25784897:+|nuORF ENST00000470035.1_1_1:25780757-25784897:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.3068237304688 2 541.305667 1080.59678 0.49816 0.00026966 -0.94291 -0.0005104 -0.44475 -0.00024075 541.8061048449712 69.264 0.23994 69.295 69.093 69.333 0.030914 22 11 2 0 0 0 0.10247 1 38052 38052 32.786 16.939 1 3927900 74287 10248 49717 50785 86397 86397 0.059706198569983826 VYIEAAIRF 9 Unmodified _VYIEAAIRF_ 0 0 0 ENST00000470035.1_1_1:25780757-25784897:+|nuORF;nc|ENSG00000204178|Q8N5G2-3|MACO1;ENSG00000204178|ENST00000374343|MACO1 ENST00000470035.1_1_1:25780757-25784897:+|nuORF ENST00000470035.1_1_1:25780757-25784897:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 541.3048706054688 2 541.305667 1080.59678 NaN NaN NaN NaN NaN NaN NaN 78.485 1 72.31 71.81 72.81 -6.1757 0 0 0 0.16996 1 51373 51373 34.402 9.0024 1 74288 10248 49717 50785 86398 86398 0.059706198569983826 VYIEHRLMM 9 Unmodified _VYIEHRLMM_ 0 0 0 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2061462402344 3 397.87195 1190.59402 0.81976 0.00032616 -1.0045 -0.00039968 -0.18478 -7.3519E-05 397.87211139495656 48.051 0.42446 42.817 42.58 43.005 -5.2339 52 25 3 0 0 0 0.10734 1 29839 29839 29.841 22.739 1 22237000 74289 7502 49718 50786 86399 86399 0.006347051361672129 VYIEHRLMM 9 Oxidation (M) _VYIEHRLMM(Oxidation (M))_ VYIEHRLM(0.126)M(0.874) VYIEHRLM(-8.4)M(8.4) 0 0 1 ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-2|MCM7 ENSG00000166508|ENST00000303887|MCM7 ENSG00000166508|ENST00000303887|MCM7 MSMS AL20221201_MKP_PDAC_01 4 604.3009643554688 2 604.301744 1206.58893 NaN NaN NaN NaN NaN NaN NaN 37.501 1 33.217 32.717 33.717 -4.2835 0 0 0 0.053277 1 22014 22014 56.177 22.075 2 74290 7502 49718 50787 86400 86400 1289 -0.006095987264643554 VYIEKNDKL 9 Unmodified _VYIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5447082519531 3 374.544885 1120.61282 -0.50545 -0.00018931 -0.13385 -5.0132E-05 -0.6393 -0.00023945 374.54479802265354 26.065 0.38018 26.065 25.883 26.263 0 66 20 5 0 0 0 0.062454 2 13338 13338;13437 45.74 13.272 1 163800000 74291 901 49719 50788 86401;86402 86401 0.05734281303239186 VYIEKNDKL 9 Unmodified _VYIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3121948242188 2 561.313689 1120.61282 -0.21406 -0.00012016 -0.1188 -6.6682E-05 -0.33286 -0.00018684 561.3135408272047 26.057 0.24634 26.057 25.924 26.17 0 37 12 4 0 0 0 0.012228 1 13351 13351 74.2 8.9646 1 29212000 74292 901 49719 50788 86403 86403 0.05734281303239186 VYIEKNDKL 9 Unmodified _VYIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5460510253906 3 374.544885 1120.61282 1.2238 0.00045836 -0.46106 -0.00017269 0.76271 0.00028567 374.54465415140567 29.083 0.40829 25.781 25.61 26.019 -3.3016 73 25 4 0 0 0 0.025842 2 16235 16235;16365 46.022 15.319 1 651210000 74293 901 49719 50788 86404;86405 86404 0.05734281303239186 VYIEKNDKL 9 Unmodified _VYIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3151245117188 2 561.313689 1120.61282 0.89658 0.00050326 -0.36202 -0.00020321 0.53456 0.00030006 561.3135650073131 29.135 0.31219 25.833 25.672 25.984 -3.3016 43 19 3 0 0 0 0.0087923 2 16262 16262;16425 103.42 14.466 1 137430000 74294 901 49719 50788 86406;86407 86406 0.05734281303239186 VYIEKNDKL 9 Unmodified _VYIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 374.544885 1120.61282 0.19265 7.2155E-05 1.118 0.00041872 1.3106 0.00049088 374.5454549833113 25.902 0.086559 25.929 25.897 25.984 0.026951 0.0039715 0.0014805 NaN 46.022 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4152500 74295 901 49719 50788 0.05734281303239186 VYIELTLPQF 10 Unmodified _VYIELTLPQF_ 0 0 0 nc|ENSG00000149600|Q86VX2-2|COMMD7;ENSG00000149600|ENST00000278980|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 nc|ENSG00000149600|Q86VX2-2|COMMD7 MSMS AL20221201_MKP_PDAC_01 4 611.8438110351562 2 611.839539 1221.66453 NaN NaN NaN NaN NaN NaN NaN 100.89 1 94.714 94.214 95.214 -6.1757 0 0 0 0.060005 1 67584 67584 54.774 14.816 1 74296 6025 49720 50789 86408 86408 0.06256024997128407 VYIFFMLY 8 Unmodified _VYIFFMLY_ 0 0 0 ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF ENST00000379619.5_1_2:28639168-28639276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.2828369140625 2 548.282815 1094.55108 -0.090889 -4.9833E-05 0.18822 0.0001032 0.097334 5.3366E-05 548.2828688595157 37.798 1.1104 37.526 37.039 38.15 -0.27133 94 50 2 0 0 0 0.61999 1 19711 19711 24.21 6.7673 1 3353200 74297 12574 49721 50790 86409 86409 0.007582583504017748 VYIFSGPLSI 10 Unmodified _VYIFSGPLSI_ 0 0 0 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 REV__nc|ENSG00000143341|Q96RW7-2|HMCN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.3067016601562 2 548.307875 1094.6012 NaN NaN NaN NaN NaN NaN NaN 81.732 1 81.237 80.737 81.737 -0.4952 0 0 0 0.7417 1 44753 44753 14.838 0.25658 1 + 74298 20626 49722 50791 86410 86410 0.05768084279907271 VYIGKLNMI 9 Oxidation (M) _VYIGKLNM(Oxidation (M))I_ VYIGKLNM(1)I VYIGKLNM(55)I 0 0 1 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.80224609375 2 533.801903 1065.58925 NaN NaN NaN NaN NaN NaN NaN 50.683 1 50.629 50.129 51.129 -0.053871 0 0 0 0.056448 1 27412 27412 54.774 24.549 1 74299 1354 49723 50792 86411 86411 228 0.05908144265072224 VYIHGGGWAL 10 Unmodified _VYIHGGGWAL_ 0 0 0 nc|ENSG00000144959|Q6PIU2-2|NCEH1;ENSG00000144959|ENST00000475381|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7828979492188 2 536.782359 1071.55016 0.29763 0.00015976 0.42681 0.0002291 0.72444 0.00038886 536.7824793621355 59.82 0.30371 59.766 59.614 59.918 -0.053062 39 14 4 0 0 0 0.025277 2 32582 32582;32688 70.865 42.378 1 25272000 74300 5661 49724 50793 86412;86413 86412 0.017251800257099603 VYIHHFDRI 9 Unmodified _VYIHHFDRI_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.5486755371094 3 400.548852 1198.62473 -0.18013 -7.2151E-05 0.39847 0.00015961 0.21834 8.7454E-05 400.5489249711535 32.588 0.26696 32.459 32.309 32.576 -0.12915 33 11 4 0 0 0 0.13639 1 16937 16937 29.437 12.871 1 11569000 74301 8182 49725 50794 86414 86414 0.033359428370886235 VYIHHFDRI 9 Unmodified _VYIHHFDRI_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.8824157714844 3 400.548852 1198.62473 -0.30774 -0.00012327 -0.016879 -6.7607E-06 -0.32462 -0.00013003 400.54875959824585 32.431 0.27154 32.461 32.319 32.591 0.029747 25 10 3 0 0 0 0.26811 2 17019 17019;17026 18.721 10.277 1 5962700 74302 8182 49725 50794 86415;86416 86415 0.033359428370886235 VYIHHFDRI 9 Unmodified _VYIHHFDRI_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2174682617188 3 400.548852 1198.62473 0.62843 0.00025172 -0.28747 -0.00011515 0.34095 0.00013657 400.548859369455 36.51 0.39433 32.239 32.041 32.435 -4.2701 57 24 3 0 0 0 0.11005 2 21284 21284;21411 32.037 18.644 1 30963000 74303 8182 49725 50794 86417;86418 86417 0.033359428370886235 VYIHHFDSI 9 Unmodified _VYIHHFDSI_ 0 0 0 ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.5257263183594 3 377.525825 1129.55564 0.052852 1.9953E-05 -0.245 -9.2492E-05 -0.19214 -7.2539E-05 377.5257014536953 39.807 0.31892 39.51 39.371 39.69 -0.29716 49 15 4 0 0 0 0.37804 1 21070 21070 13.042 6.4121 1 18785000 74304 5456 49726 50795 86419 86419 -0.003951411825028117 VYIHHFDSI 9 Unmodified _VYIHHFDSI_ 0 0 0 ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5264282226562 3 377.525825 1129.55564 1.1217 0.00042348 0.72888 0.00027517 1.8506 0.00069865 377.5259733326019 44.445 0.40439 39.593 39.371 39.775 -4.852 74 30 3 0 0 0 0.37804 1 27099 27099 13.042 6.8506 1 67541000 74305 5456 49726 50795 86420 86420 -0.003951411825028117 VYIHHFDSI 9 Unmodified _VYIHHFDSI_ 0 0 0 ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C ENSG00000142961|ENST00000319928|MOB3C MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.785888671875 2 565.785099 1129.55564 0.79759 0.00045126 3.1873 0.0018033 3.9849 0.0022546 565.7869594304309 44.435 0.22937 39.583 39.471 39.701 -4.852 32 15 3 0 0 0 0.0077963 1 27124 27124 109.63 73.585 1 31471000 74306 5456 49726 50795 86421 86421 -0.003951411825028117 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3043212890625 2 567.303124 1132.5917 0.48847 0.00027711 0.17891 0.0001015 0.66739 0.00037861 567.3029709827329 60.074 0.32679 60.021 59.816 60.143 -0.053062 69 17 5 0 0 0 0.037795 1 32687 32687 64.236 31.931 1 64475000 74307 960 49727 50796 86422 86422 0.030703159943413993 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.302978515625 2 567.303124 1132.5917 0.50329 0.00028552 -0.87188 -0.00049462 -0.36859 -0.0002091 567.3023632759819 65.672 0.87059 59.496 59.266 60.137 -6.1757 133 50 3 0 0 0 0.024981 3 42689 42554;42689;42824 71.134 37.031 1 151240000 74308 960 49727 50796 86423;86424;86425 86424 0.030703159943413993 VYIHPSSALF 10 Unmodified _VYIHPSSALF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 567.303124 1132.5917 0.15684 8.8973E-05 -0.16765 -9.5111E-05 -0.010818 -6.1373E-06 567.3031094138771 60.435 0.24237 59.944 59.806 60.049 -0.49079 -0.038252 -0.00024929 NaN 64.236 31 11 4 NaN NaN NaN NaN 0 NaN NaN 0 13040000 74309 960 49727 50796 0.030703159943413993 VYIHRTDRL 9 Unmodified _VYIHRTDRL_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5564270019531 3 391.556007 1171.64619 NaN NaN NaN NaN NaN NaN NaN 20.981 1 20.981 20.481 21.481 0 0 0 0 0.75456 1 10586 10586 7.609 2.7119 1 74310 4720 49728 50797 86426 86426 0.06723327865779538 VYIHRTDRL 9 Unmodified _VYIHRTDRL_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5573120117188 3 391.556007 1171.64619 -0.30235 -0.00011839 0.011882 4.6524E-06 -0.29047 -0.00011373 391.55595754899133 20.848 0.24865 20.876 20.775 21.024 0.028357 19 10 3 0 0 0 0.2289 1 10553 10553 20.581 9.7814 1 2521000 74311 4720 49728 50797 86427 86427 0.06723327865779538 VYIHRTDRL 9 Unmodified _VYIHRTDRL_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;nc|ENSG00000135541|Q8N157-3|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5564880371094 3 391.556007 1171.64619 0.47385 0.00018554 0.44732 0.00017515 0.92117 0.00036069 391.556389122728 23.771 0.52849 20.943 20.579 21.107 -2.8273 87 31 4 0 0 0 0.11005 2 12957 12836;12957 32.037 13.664 1 32939000 74312 4720 49728 50797 86428;86429 86429 0.06723327865779538 VYIIDLGPNF 10 Unmodified _VYIIDLGPNF_ 0 0 0 ENST00000274026.9_1_4:122737724-122737820:-|nuORF ENST00000274026.9_1_4:122737724-122737820:-|nuORF ENST00000274026.9_1_4:122737724-122737820:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8103637695312 2 575.810782 1149.60701 0.59481 0.0003425 -0.69297 -0.00039902 -0.098157 -5.652E-05 575.8103572823181 87.904 0.22177 87.399 87.239 87.46 -0.50423 17 10 2 0 0 0 0.6966 1 48058 48058 3.2813 0.28607 1 576960 74313 11383 49729 50798 86430 86430 0.038191827915625254 VYIIGSSGF 9 Unmodified _VYIIGSSGF_ 0 0 0 ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 942.4918823242188 1 942.49311 941.485833 -0.16092 -0.00015167 1.3194 0.0012435 1.1585 0.0010918 942.4940597636368 69.834 0.38573 69.355 69.109 69.494 -0.47903 33 16 3 0 0 0 0.012158 2 38226 38125;38226 74.396 42.279 1 4061000 74314 5542 49730 50799 86431;86432 86432 0.012749801489121637 VYIIGSSGF 9 Unmodified _VYIIGSSGF_ 0 0 0 ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH ENSG00000143653|ENST00000366510|SCCPDH MULTI-MSMS AL20221201_MKP_PDAC_01 4 942.492431640625 1 942.49311 941.485833 -0.27781 -0.00026184 3.1075 0.0029288 2.8297 0.0026669 942.4951649095782 76.918 0.2183 70.742 70.541 70.759 -6.1757 15 10 2 0 0 0 0.0086629 1 50250 50250 101.72 54.801 1 18746000 74315 5542 49730 50799 86433 86433 0.012749801489121637 VYIITKPEL 9 Unmodified _VYIITKPEL_ 0 0 0 NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant;ENSG00000114388|ENST00000232501|NPRL2;ENST00000479512.5_1_3:50387244-50387426:-|nuORF;ENST00000487632.5_1_3:50386870-50387426:-|nuORF NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant NPRL2|p.S289Efs*19|1|0.45|ENSG00000114388|chr3:50348174-50348192|CACGGTAGTGCCAGGGCTC/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3240356445312 2 538.323525 1074.6325 0.36841 0.00019833 -0.21387 -0.00011513 0.15455 8.3196E-05 538.3231645537977 57.367 0.2339 56.878 56.75 56.984 -0.48974 21 10 3 0 0 0 0.08907 1 31164 31164 45.7 20.3 1 2925500 74316 3034 49731 50800 86434 86434 0.09816657313990618 VYIKDLSAY 9 Unmodified _VYIKDLSAY_ 0 0 0 nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A nc|ENSG00000131437|Q9Y496|KIF3A nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.2908935546875 2 536.289682 1070.56481 0.80664 0.0004326 2.4413 0.0013093 3.248 0.0017418 536.2912775237942 57.832 0.26206 57.765 57.513 57.775 -0.066036 19 12 2 0 0 0 0.14 1 31447 31447 29.082 1.4528 1 4587400 74317 4325 49732 50801 86435 86435 0.03235207383158922 VYIKDLSAY 9 Unmodified _VYIKDLSAY_ 0 0 0 nc|ENSG00000131437|Q9Y496|KIF3A;ENSG00000131437|ENST00000403231|KIF3A nc|ENSG00000131437|Q9Y496|KIF3A nc|ENSG00000131437|Q9Y496|KIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2915649414062 2 536.289682 1070.56481 1.303 0.00069876 1.8307 0.00098176 3.1336 0.0016805 536.2907507683798 63.999 0.72025 57.823 57.595 58.315 -6.1757 79 38 3 0 0 0 0.1773 1 41437 41437 25.399 1.3787 1 54247000 74318 4325 49732 50801 86436 86436 0.03235207383158922 VYIKDLSSF 9 Unmodified _VYIKDLSSF_ 0 0 0 ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C ENSG00000084731|ENST00000264712|KIF3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2901611328125 2 536.289682 1070.56481 0.21281 0.00011413 0.77908 0.00041781 0.99189 0.00053194 536.2900806952871 58.139 0.25253 57.649 57.471 57.724 -0.48974 24 11 3 0 0 0 0.11784 1 31574 31574 31.268 0.6318 1 14098000 74319 1395 49733 50802 86437 86437 0.03235207383158922 VYIKDVDHL 9 Unmodified _VYIKDVDHL_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8695983886719 3 367.86948 1100.58661 0.24505 9.0145E-05 0.32586 0.00011987 0.57091 0.00021002 367.86956293349607 39.19 0.33143 39.19 38.97 39.302 0 45 15 4 0 0 0 0.019303 2 20932 20932;21036 66.457 43.799 1 33580000 74320 1425 49734 50803 86438;86439 86438 0.04034012131751297 VYIKDVDHL 9 Unmodified _VYIKDVDHL_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8695983886719 3 367.86948 1100.58661 -0.046681 -1.7173E-05 -0.048351 -1.7787E-05 -0.095032 -3.4959E-05 367.8694160888668 39.461 0.15023 39.164 39.07 39.22 -0.29716 11 6 2 0 0 0 0.16226 1 20826 20826 31.268 16.863 1 1293400 74321 1425 49734 50803 86440 86440 0.04034012131751297 VYIKDVDHL 9 Unmodified _VYIKDVDHL_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant nc|ENSG00000085982|Q9NVE5|USP40 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.8704528808594 3 367.86948 1100.58661 1.1407 0.00041962 2.7561 0.0010139 3.8968 0.0014335 367.8705295942707 44.089 0.27589 39.324 39.139 39.415 -4.7648 44 17 3 0 0 0 0.06294 1 26798 26798 38.615 17.025 1 49398000 74322 1425 49734 50803 86441 86441 0.04034012131751297 VYIKGDRLENF 11 Unmodified _VYIKGDRLENF_ 0 0 0 ENSG00000131873|ENST00000254190|CHSY1 ENSG00000131873|ENST00000254190|CHSY1 ENSG00000131873|ENST00000254190|CHSY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.9114685058594 3 451.910227 1352.70885 1.321 0.00059697 0.5958 0.00026925 1.9168 0.00086622 451.91036424919406 47.412 0.23469 42.178 42.025 42.26 -5.2339 17 13 2 0 0 0 0.18957 1 29387 29387 32.616 14.753 1 9303900 74323 4357 49735 50804 86442 86442 0.04660429143314104 VYIKHPVS 8 Unmodified _VYIKHPVS_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.7735290527344 2 471.774003 941.533452 NaN NaN NaN NaN NaN NaN NaN 35.754 1 35.779 35.279 36.279 0.024967 0 0 0 0.46711 1 18915 18915 43.858 22.112 1 74324 1696 49736 50805 86443 86443 0.06034679139747823 VYIKHPVS 8 Unmodified _VYIKHPVS_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20221201_MKP_PDAC_01 4 471.7748107910156 2 471.774003 941.533452 NaN NaN NaN NaN NaN NaN NaN 40.274 1 35.745 35.245 36.245 -4.5294 0 0 0 0.42933 1 24035 24035 49.933 13.889 1 74325 1696 49736 50805 86444 86444 0.06034679139747823 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.5462951660156 3 352.546449 1054.61752 0.11762 4.1466E-05 0.51999 0.00018332 0.63761 0.00022479 352.54657323875165 35.915 0.31947 35.915 35.755 36.074 0 52 15 4 0 0 0 0.085319 2 18972 18972;19085 36.506 16.092 1 57713000 74326 1696 49737 50806 86445;86446 86445 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.316162109375 2 528.316035 1054.61752 0.42716 0.00022567 0.11829 6.2494E-05 0.54544 0.00028817 528.3160597227775 35.927 0.25771 35.927 35.796 36.053 0 31 12 3 0 0 0 0.0033077 1 19005 19005 114.65 68.628 1 14863000 74327 1696 49737 50806 86447 86447 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.8807373046875 3 352.546449 1054.61752 -0.51662 -0.00018213 0.16483 5.811E-05 -0.35179 -0.00012402 352.54644056980374 36.085 0.57882 35.835 35.615 36.193 -0.2497 100 26 5 0 0 0 0.036857 3 18843 18843;18944;19048 51.63 38.587 1 1208700000 74328 1696 49737 50806 86448;86449;86450 86448 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.315185546875 2 528.316035 1054.61752 -0.56423 -0.00029809 0.20668 0.00010919 -0.35755 -0.0001889 528.3161981416449 36.078 0.49432 35.828 35.638 36.132 -0.2497 86 22 5 0 0 0 0.0087224 2 18856 18856;18955 103.35 65.474 1 195880000 74329 1696 49737 50806 86451;86452 86451 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5460510253906 3 352.546449 1054.61752 -0.22116 -7.7969E-05 -0.83751 -0.00029526 -1.0587 -0.00037323 352.54615882673477 35.71 1.1498 35.734 35.515 36.665 0.024967 173 53 6 0 0 0 0.085319 5 18926 18822;18926;19033;19137;19246 36.506 18.346 1 1802299999.9999998 74330 1696 49737 50806 86453;86454;86455;86456;86457 86454 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.315185546875 2 528.316035 1054.61752 -0.1207 -6.3767E-05 -0.64956 -0.00034318 -0.77026 -0.00040694 528.3156567993154 35.71 0.63171 35.735 35.536 36.168 0.024967 94 29 5 0 0 0 0.0091809 3 18840 18840;18939;19050 82.529 57.13 1 345180000 74331 1696 49737 50806 86458;86459;86460 86458 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5465393066406 3 352.546449 1054.61752 -0.32081 -0.0001131 1.9629 0.00069201 1.6421 0.00057891 352.547128301749 36.795 0.78095 36.817 36.661 37.442 0.021545 54 35 2 0 0 0 0.4887 1 19434 19434 8.1555 3.8263 1 1920300 74332 1696 49737 50806 86461 86461 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5468444824219 3 352.546449 1054.61752 1.0331 0.00036423 -0.80355 -0.00028329 0.22959 8.094E-05 352.5460834072341 40.144 1.8893 35.614 35.188 37.078 -4.5294 454 131 6 0 0 0 0.015688 8 23683 23683;23810;23948;24081;24211;24341;24469;24612 67.838 39.344 1 7750699999.999999 74333 1696 49737 50806 86462;86463;86464;86465;86466;86467;86468;86469 86462 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.316650390625 2 528.316035 1054.61752 0.34266 0.00018103 -0.16154 -8.5342E-05 0.18113 9.5693E-05 528.3158611848392 40.132 1.5503 35.602 35.231 36.782 -4.5294 327 108 5 0 0 0 0.0085366 5 23711 23711;23843;23977;24105;24235 99.755 61.781 1 3075499999.9999995 74334 1696 49737 50806 86470;86471;86472;86473;86474 86470 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1055.624267578125 1 1055.62479 1054.61752 0.12069 0.00012741 -0.74539 -0.00078686 -0.6247 -0.00065945 1055.6243513634463 40.104 0.40781 35.575 35.416 35.824 -4.5294 48 36 2 0 0 0 0.012586 1 24018 24018 89.401 47.561 1 24840000 74335 1696 49737 50806 86475 86475 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.5475158691406 3 352.546449 1054.61752 1.9991 0.00070479 -0.60841 -0.00021449 1.3907 0.00049029 352.5462817911699 41.96 0.58606 37.276 36.922 37.508 -4.6846 66 36 2 0 0 0 0.18144 3 25350 25069;25203;25350 24.991 13.351 1 13222000 74336 1696 49737 50806 86476;86477;86478 86478 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20221201_MKP_PDAC_01 4 352.547119140625 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 37.939 1 33.57 33.07 34.07 -4.3689 0 0 0 0.75456 1 22321 22321 7.609 1.8771 1 74337 1696 49737 50806 86479 86479 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20221201_MKP_PDAC_01 4 352.5464782714844 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 42.302 1 37.618 37.118 38.118 -4.6846 0 0 0 0.20976 1 25539 25539 29.841 17.666 1 74338 1696 49737 50806 86480 86480 0.09239210236660256 VYIKHPVSL 9 Unmodified _VYIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MSMS AL20221201_MKP_PDAC_01 4 352.5472412109375 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 42.48 1 37.795 37.295 38.295 -4.6846 0 0 0 0.3031 1 25670 25670 24.991 8.8419 1 74339 1696 49737 50806 86481 86481 0.09239210236660256 VYILAMVFDM 10 Unmodified _VYILAMVFDM_ 0 0 0 REV__ENSG00000170412|ENST00000392627|GPRC5C REV__ENSG00000170412|ENST00000392627|GPRC5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.3035888671875 2 601.303421 1200.59229 0.42937 0.00025818 0.199 0.00011966 0.62836 0.00037784 601.3037330491145 92.696 0.28781 92.239 92.088 92.376 -0.45741 38 12 4 0 0 0 0.5905 1 50709 50709 11.64 11.64 1 3252400 + 74340 22479 49738 50807 86482 86482 1.651327556828619E-05 VYILAMVFDM 10 Unmodified _VYILAMVFDM_ 0 0 0 REV__ENSG00000170412|ENST00000392627|GPRC5C REV__ENSG00000170412|ENST00000392627|GPRC5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.3031616210938 2 601.303421 1200.59229 1.2479 0.00075038 -0.5291 -0.00031815 0.71882 0.00043223 601.3033859176525 92.183 0.44824 92.214 91.993 92.441 0.030197 49 16 4 0 0 0 0.50944 2 51231 51231;51342 15.847 15.847 1 32322000 + 74341 22479 49738 50807 86483;86484 86483 1.651327556828619E-05 VYILIYRNMLK 11 Unmodified _VYILIYRNMLK_ 0 0 0 ENST00000521988.5_2_8:93898270-93898507:-|nuORF ENST00000521988.5_2_8:93898270-93898507:-|nuORF ENST00000521988.5_2_8:93898270-93898507:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 475.948486328125 3 475.947736 1424.82138 1.1475 0.00054614 0.35066 0.00016689 1.4981 0.00071303 475.9476676139244 20.141 0.29498 17.484 17.312 17.607 -2.6564 46 20 3 0 0 0 0.73114 1 10651 10651 1.3296 0.11481 1 7218600 74342 14750 49739 50808 86485 86485 0.1259598661581549 VYILKDAASI 10 Unmodified _VYILKDAASI_ 0 0 0 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 REV__nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.824462890625 2 546.818607 1091.62266 0.37422 0.00020463 3.3024 0.0018058 3.6766 0.0020104 546.8206877133059 37.141 0.35856 37.141 36.958 37.316 0 39 17 3 0 0 0 0.47059 1 19793 19793 20.415 7.883 1 2971500 + 74343 20336 49740 50809 86486 86486 0.08051469308588821 VYILKGGYERF 11 Unmodified _VYILKGGYERF_ 0 0 0 ENSG00000127952|ENST00000359697|STYXL1;nc|ENSG00000127952|Q9Y6J8-2|STYXL1;nc|ENSG00000127952|Q9Y6J8-3|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 ENSG00000127952|ENST00000359697|STYXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.2498168945312 3 448.915201 1343.72377 0.84246 0.00037819 -0.1378 -6.186E-05 0.70466 0.00031633 448.9152361308605 48.019 0.21677 47.981 47.849 48.066 -0.038643 24 10 3 0 0 0 0.34849 1 25879 25879 24.229 17.605 1 6446800 74344 4037 49741 50810 86487 86487 0.06565921011315368 VYILQPEVI 9 Unmodified _VYILQPEVI_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.3167724609375 2 537.3157 1072.61685 0.26207 0.00014081 0.95342 0.00051229 1.2155 0.0006531 537.3161985277092 81.158 0.3219 81.158 81.004 81.326 0 39 15 3 0 0 0 0.20428 2 45012 45012;45114 32.117 13.982 1 1707500 74345 9979 49742 50811 86488;86489 86488 0.08344370796953626 VYILQPEVI 9 Unmodified _VYILQPEVI_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1073.624877929688 1 1073.62412 1072.61685 -0.42626 -0.00045764 2.757 0.00296 2.3308 0.0025024 1073.6265383056507 81.163 0.19196 81.163 81.046 81.238 0 13 9 2 0 0 0 0.2324 1 45091 45091 28.487 15.955 1 395500 74346 9979 49742 50811 86490 86490 0.08344370796953626 VYILQPEVI 9 Unmodified _VYILQPEVI_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3163452148438 2 537.3157 1072.61685 0.62112 0.00033374 0.64213 0.00034503 1.2632 0.00067876 537.3159616184735 81.659 0.39687 81.164 80.972 81.369 -0.4952 41 15 4 0 0 0 0.07087 2 44672 44672;44778 53.576 15.424 1 4178100 74347 9979 49742 50811 86491;86492 86491 0.08344370796953626 VYILQPEVI 9 Unmodified _VYILQPEVI_ 0 0 0 nc|ENSG00000197603|Q9H799-5|CPLANE1;nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 nc|ENSG00000197603|Q9H799-5|CPLANE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1073.62412 1072.61685 0.59343 0.00063712 0.98982 0.0010627 1.5832 0.0016998 1073.6244734359545 81.654 0.34095 81.159 80.972 81.313 -0.4952 -0.0020183 -0.0010802 NaN 28.487 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 1839400 74348 9979 49742 50811 0.08344370796953626 VYILRVPLKI 10 Unmodified _VYILRVPLKI_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-7|ST7;ENST00000417919.5_3_7:116593594-116738680:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.2739868164062 3 405.272548 1212.79581 NaN NaN NaN NaN NaN NaN NaN 35.948 1 35.948 35.448 36.448 0 0 0 0 0.99897 1 19034 19034 0.77653 0.078866 1 74349 289 49743 50812 86493 86493 0.1979288015570546 VYINEVRVI 9 Unmodified _VYINEVRVI_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.8245849609375 2 552.824224 1103.63389 0.28595 0.00015808 0.60924 0.0003368 0.89519 0.00049488 552.8241900144325 56.554 0.2104 56.554 56.424 56.635 0 21 8 3 0 0 0 0.044011 1 31458 31458 47.749 23.728 1 2081300 74350 7270 49744 50813 86494 86494 0.08622291402753035 VYINEVRVI 9 Unmodified _VYINEVRVI_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8248901367188 2 552.824224 1103.63389 0.34865 0.00019274 -0.49862 -0.00027565 -0.14996 -8.2903E-05 552.8239095292575 57.036 0.34441 56.551 56.349 56.694 -0.48554 50 15 4 0 0 0 0.010611 2 30938 30938;31042 78.728 40.754 1 32724000 74351 7270 49744 50813 86495;86496 86495 0.08622291402753035 VYINEVRVI 9 Unmodified _VYINEVRVI_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8242797851562 2 552.824224 1103.63389 0.42795 0.00023658 -0.13071 -7.2259E-05 0.29724 0.00016432 552.8241449621282 56.688 0.22216 56.619 56.497 56.72 -0.068741 19 10 3 0 0 0 0.023481 1 30833 30833 60.074 29.437 1 4683500 74352 7270 49744 50813 86497 86497 0.08622291402753035 VYINEVRVI 9 Unmodified _VYINEVRVI_ 0 0 0 ENSG00000164944|ENST00000297591|VIRMA;nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA ENSG00000164944|ENST00000297591|VIRMA ENSG00000164944|ENST00000297591|VIRMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.8243408203125 2 552.824224 1103.63389 1.767 0.00097686 -0.83024 -0.00045898 0.9368 0.00051788 552.8236262984236 62.83 0.65746 56.654 56.398 57.056 -6.1757 87 33 4 0 0 0 0.023481 2 40622 40498;40622 60.074 29.437 1 83941000 74353 7270 49744 50813 86498;86499 86499 0.08622291402753035 VYINLANLI 9 Unmodified _VYINLANLI_ 0 0 0 ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8087768554688 2 516.808042 1031.60153 1.4612 0.00075515 -3.0992 -0.0016017 -1.638 -0.00084653 517.3064310740308 100.99 0.20567 94.815 94.701 94.907 -6.1757 16 11 2 0 0 0 0.045537 1 67684 67684 46.921 20.037 1 128780000 74354 5146 49745 50814 86500 86500 0.08699503999741864 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF nc|ENSG00000095059|P49366-3|DHPS nc|ENSG00000095059|P49366-3|DHPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7701416015625 2 542.769114 1083.52368 0.45878 0.00024901 0.24221 0.00013147 0.70099 0.00038048 542.7691257015546 53.152 0.37622 53.152 53.003 53.38 0 60 16 5 0 0 0 0.14602 2 29398 29398;29506 28.487 11.374 1 73647000 74355 1643 49746 50815 86501;86502 86501 -0.014745536562941197 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF nc|ENSG00000095059|P49366-3|DHPS nc|ENSG00000095059|P49366-3|DHPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7689208984375 2 542.769114 1083.52368 0.24888 0.00013508 -0.15142 -8.2187E-05 0.097455 5.2896E-05 542.7688662814478 53.786 0.27576 53.333 53.183 53.459 -0.45354 37 13 3 0 0 0 0.16226 1 29080 29080 26.884 9.7708 1 14983000 74356 1643 49746 50815 86503 86503 -0.014745536562941197 VYINTAQEF 9 Unmodified _VYINTAQEF_ 0 0 0 nc|ENSG00000095059|P49366-3|DHPS;ENSG00000095059|ENST00000210060|DHPS;ENST00000600510.1_1_19:12786654-12786995:-|nuORF nc|ENSG00000095059|P49366-3|DHPS nc|ENSG00000095059|P49366-3|DHPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.77001953125 2 542.769114 1083.52368 0.97885 0.00053129 0.43839 0.00023794 1.4172 0.00076923 542.7692901493401 61.03 0.52591 54.883 54.63 55.156 -6.1478 82 27 4 0 0 0 0.038285 3 39198 39198;39322;39446 50.855 14.728 1 195490000 74357 1643 49746 50815 86504;86505;86506 86504 -0.014745536562941197 VYIPEDIPI 9 Unmodified _VYIPEDIPI_ 0 0 0 nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;ENST00000607632.1_1_1:2985775-3103053:+|nuORF;PRDM16|p.R933Sfs*39|1|0.16|ENSG00000142611|chr1:3417930-3417931|-/TC|frameshift_variant nc|ENSG00000142611|Q9HAZ2-2|PRDM16 nc|ENSG00000142611|Q9HAZ2-2|PRDM16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7916259765625 2 529.792058 1057.56956 NaN NaN NaN NaN NaN NaN NaN 80.504 1 80.504 80.004 81.004 0 0 0 0 0.6306 1 44699 44699 11.64 0.52583 1 74358 5431 49747 50816 86507 86507 0.043080915259679387 VYIPEDIPI 9 Unmodified _VYIPEDIPI_ 0 0 0 nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16;ENST00000607632.1_1_1:2985775-3103053:+|nuORF;PRDM16|p.R933Sfs*39|1|0.16|ENSG00000142611|chr1:3417930-3417931|-/TC|frameshift_variant nc|ENSG00000142611|Q9HAZ2-2|PRDM16 nc|ENSG00000142611|Q9HAZ2-2|PRDM16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.7918701171875 2 529.792058 1057.56956 1.1308 0.00059908 -1.624 -0.00086037 -0.49319 -0.00026129 529.7916074048788 88.497 0.29198 82.321 82.132 82.424 -6.1757 24 15 2 0 0 0 0.052168 1 58335 58335 44.407 10.305 1 9068400 74359 5431 49747 50816 86508 86508 0.043080915259679387 VYIPVLPPHL 10 Unmodified _VYIPVLPPHL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENST00000474676.1_1_9:126331853-126520026:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3475952148438 2 574.347335 1146.68012 1.3028 0.00074825 0.3638 0.00020895 1.6666 0.0009572 574.3474202672168 82.264 1.1996 82.326 81.981 83.181 0.061996 80 46 2 0 0 0 0.046949 4 45562 45433;45562;45669;45801 59.795 40.538 1 5695200 74360 3442 49748 50817 86509;86510;86511;86512 86510 0.1126435630483229 VYIPVLPPHL 10 Unmodified _VYIPVLPPHL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENST00000474676.1_1_9:126331853-126520026:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3485107421875 2 574.347335 1146.68012 1.3439 0.00077187 0.39599 0.00022744 1.7399 0.00099931 574.3474653606422 96.712 0.98677 90.536 90.041 91.028 -6.1757 160 58 3 0 0 0 0.012597 5 64320 63815;63945;64070;64191;64320 82.939 46.812 1 47050000 74361 3442 49748 50817 86513;86514;86515;86516;86517 86517 0.1126435630483229 VYIPVLPPHL 10 Unmodified _VYIPVLPPHL_ 0 0 0 nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;ENST00000473039.5_1_9:126143713-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-7|DENND1A;ENST00000474676.1_1_9:126331853-126520026:-|nuORF nc|ENSG00000119522|Q8TEH3-4|DENND1A nc|ENSG00000119522|Q8TEH3-4|DENND1A MSMS AL20221201_MKP_PDAC_01 4 574.3492431640625 2 574.347335 1146.68012 NaN NaN NaN NaN NaN NaN NaN 97.243 1 91.068 90.568 91.568 -6.1757 0 0 0 0.24128 1 64448 64448 40.449 31.101 1 74362 3442 49748 50817 86518 86518 0.1126435630483229 VYIQQTDDSL 10 Unmodified _VYIQQTDDSL_ 0 0 0 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 ENSG00000130706|ENST00000253003|ADRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2885131835938 2 591.287868 1180.56118 0.70541 0.0004171 -0.2892 -0.000171 0.41621 0.0002461 591.2883100887635 73.44 0.60291 72.964 72.541 73.144 -0.47588 70 26 5 0 0 0 0.2178 1 40258 40258 32.305 0 1 8019300 74363 4241 49749 50818 86519 86519 -0.02187507181338333 VYIRGSKIRF 10 Unmodified _VYIRGSKIRF_ 0 0 0 nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5835571289062 3 413.583785 1237.72953 -0.16201 -6.7005E-05 0.14387 5.9501E-05 -0.018145 -7.5045E-06 413.5839289098991 35.117 0.19395 35.144 35.039 35.233 0.027401 13 8 2 0 0 0 0.54083 1 18554 18554 14.218 7.1164 1 1790800 74364 1741 49750 50819 86520 86520 0.12017064313636183 VYIRGSKIRF 10 Unmodified _VYIRGSKIRF_ 0 0 0 nc|ENSG00000286070|P62318-2|SNRPD3;ENSG00000100028|ENST00000215829|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 nc|ENSG00000286070|P62318-2|SNRPD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.5840148925781 3 413.583785 1237.72953 0.89021 0.00036818 0.016033 6.6311E-06 0.90624 0.00037481 413.58385990082644 38.899 0.39159 34.448 34.298 34.689 -4.4509 75 24 4 0 0 0 0.1887 2 22961 22961;23082 35.08 19.831 1 49549000 74365 1741 49750 50819 86521;86522 86521 0.12017064313636183 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.516357421875 3 387.517218 1159.52982 -1.3452 -0.00052127 -0.67663 -0.0002622 -2.0218 -0.00078348 387.51698962150755 32.424 1.1036 32.424 32.242 33.345 0 170 59 6 0 0 0 0.0094915 6 16875 16875;16986;17098;17198;17333;17439 71.922 53.201 1 5378400000 74366 2242 49751 50820 86523;86524;86525;86526;86527;86528 86523 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.77099609375 2 580.772188 1159.52982 -1.1641 -0.00067609 -0.34953 -0.000203 -1.5137 -0.00087909 580.7718901386738 32.431 0.41621 32.431 32.297 32.714 0 101 24 5 0 0 0 0.0031966 2 16897 16897;17009 125.62 96.543 1 684950000 74367 2242 49751 50820 86529;86530 86529 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5165405273438 3 387.517218 1159.52982 -0.60168 -0.00023316 -0.4039 -0.00015652 -1.0056 -0.00038968 387.5170001912742 33.764 0.41126 33.764 33.633 34.044 0 33 20 2 0 0 0 0.49272 1 17799 17799 8.1555 5.8728 1 1318800 74368 2242 49751 50820 86531 86531 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5173950195312 3 387.517218 1159.52982 -0.16551 -6.4138E-05 0.021652 8.3905E-06 -0.14386 -5.5748E-05 387.5171620471944 32.509 0.51015 32.38 32.042 32.552 -0.12915 75 21 5 0 0 0 0.013472 2 16862 16862;16968 53.833 46.731 1 224630000 74369 2242 49751 50820 86532;86533 86532 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7719116210938 2 580.772188 1159.52982 -0.18001 -0.00010455 0.01546 8.9785E-06 -0.16455 -9.5568E-05 580.7721150420189 32.534 0.30517 32.405 32.199 32.505 -0.12915 24 13 2 0 0 0 0.010877 2 16886 16886;16983 77.984 53.964 1 21394000 74370 2242 49751 50820 86534;86535 86534 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.5173645019531 3 387.517218 1159.52982 -0.21645 -8.388E-05 -0.038815 -1.5041E-05 -0.25527 -9.8921E-05 387.51717935302787 32.348 0.32513 32.378 32.237 32.562 0.029747 45 13 5 0 0 0 0.023164 2 16947 16947;17055 53.833 46.356 1 75108000 74371 2242 49751 50820 86536;86537 86536 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.7725830078125 2 580.772188 1159.52982 0.29344 0.00017042 0.73774 0.00042846 1.0312 0.00059888 580.7727409366963 32.347 0.21392 32.377 32.279 32.492 0.029743 14 8 2 0 0 0 0.010877 1 16986 16986 77.984 48.144 1 6051200 74372 2242 49751 50820 86538 86538 -0.043560354247802024 VYISEHEHF 9 Unmodified _VYISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.77490234375 2 580.772188 1159.52982 0.44369 0.00025769 -0.067354 -3.9118E-05 0.37634 0.00021857 580.7720964961504 36.385 0.68555 32.192 31.914 32.6 -4.1928 155 41 5 0 0 0 0.0036753 4 21085 21085;21211;21341;21469 123.1 90.791 1 2079299999.9999998 74373 2242 49751 50820 86539;86540;86541;86542 86539 -0.043560354247802024 VYISHGTFF 9 Unmodified _VYISHGTFF_ 0 0 0 ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7723388671875 2 535.768917 1069.52328 NaN NaN NaN NaN NaN NaN NaN 70.031 1 70.031 69.531 70.531 0 0 0 0 0.36957 1 39016 39016 23.148 3.7094 1 74374 13432 49752 50821 86543 86543 -0.00869928585461821 VYISHGTFF 9 Unmodified _VYISHGTFF_ 0 0 0 ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7687377929688 2 535.768917 1069.52328 0.76992 0.0004125 -0.67603 -0.0003622 0.093891 5.0304E-05 535.7688345037742 58.11 0.20006 58.044 57.93 58.13 -0.066036 17 9 2 0 0 0 0.047788 1 31649 31649 60.39 41.133 1 6453000 74375 13432 49752 50821 86544 86544 -0.00869928585461821 VYISHGTFF 9 Unmodified _VYISHGTFF_ 0 0 0 ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF ENST00000443864.6_1_7:44664063-44684998:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.768917 1069.52328 0.19248 0.00010312 1.8878 0.0010114 2.0803 0.0011146 535.7702692426348 58.453 0.16556 57.962 57.839 58.005 -0.49079 -0.040922 0.002362 NaN 60.39 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 540160 74376 13432 49752 50821 -0.00869928585461821 VYISNGQVL 9 Unmodified _VYISNGQVL_ 0 0 0 ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK ENST00000487571.1_1_3:53922418-53925815:-|nuORF ENST00000487571.1_1_3:53922418-53925815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7748107910156 2 496.7742 991.533846 -0.048655 -2.417E-05 -0.21258 -0.00010561 -0.26124 -0.00012978 496.7744225435662 51.912 0.3689 51.912 51.71 52.079 0 51 16 4 0 0 0 0.023164 2 28650 28650;28767 60.39 24.345 1 36266000 74377 3004 49753 50822 86545;86546 86545 0.037740540689469526 VYISNGQVL 9 Unmodified _VYISNGQVL_ 0 0 0 ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK ENST00000487571.1_1_3:53922418-53925815:-|nuORF ENST00000487571.1_1_3:53922418-53925815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7747497558594 2 496.7742 991.533846 0.53364 0.0002651 0.74212 0.00036866 1.2758 0.00063377 496.7743321150734 52.075 0.25273 52.016 51.875 52.127 -0.058918 23 11 3 0 0 0 0.12841 1 28200 28200 30.225 18.585 1 2466800 74378 3004 49753 50822 86547 86547 0.037740540689469526 VYISNGQVL 9 Unmodified _VYISNGQVL_ 0 0 0 ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK ENST00000487571.1_1_3:53922418-53925815:-|nuORF ENST00000487571.1_1_3:53922418-53925815:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7752075195312 2 496.7742 991.533846 0.96343 0.00047861 0.93861 0.00046628 1.902 0.00094489 496.774903749095 59.708 0.47671 53.593 53.337 53.814 -6.1147 65 26 3 0 0 0 0.019303 2 38337 38337;38491 64.236 22.468 1 125720000 74379 3004 49753 50822 86548;86549 86548 0.037740540689469526 VYISSSAGARW 11 Unmodified _VYISSSAGARW_ 0 0 0 ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF ENSG00000137642|ENST00000260197|SORL1 ENSG00000137642|ENST00000260197|SORL1 MSMS AL20221201_MKP_PDAC_01 4 598.8053588867188 2 598.806562 1195.59857 NaN NaN NaN NaN NaN NaN NaN 49.266 1 43.87 43.37 44.37 -5.3961 0 0 0 0.027847 1 30774 30774 69.338 33.211 1 74380 4953 49754 50823 86550 86550 0.008596288749458836 VYITNFHVRM 10 Oxidation (M) _VYITNFHVRM(Oxidation (M))_ VYITNFHVRM(1) VYITNFHVRM(50) 0 0 1 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.8888854980469 3 432.557019 1294.64923 0.6452 0.00027908 -1.2872 -0.00055679 -0.642 -0.0002777 432.5571468394954 46.182 0.15039 41.227 41.176 41.327 -4.9549 14 9 2 0 0 0 0.086206 1 28489 28489 49.742 36.223 1 12284000 74381 681 49755 50824 86551 86551 106 0.013688349282801937 VYITNYRLYL 10 Unmodified _VYITNYRLYL_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;ENST00000306167.11_1_X:149761076-149807431:+|nuORF ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.3632202148438 2 659.363713 1316.71287 0.58622 0.00038653 0.52392 0.00034545 1.1101 0.00073198 659.3639386952059 73.52 0.33131 73.564 73.361 73.692 0.043983 47 14 4 0 0 0 0.035244 2 40545 40452;40545 65.474 37.307 1 9500900 74382 8061 49756 50825 86552;86553 86553 0.06718518637057969 VYITNYRLYL 10 Unmodified _VYITNYRLYL_ 0 0 0 ENSG00000171100|ENST00000370396|MTM1;nc|ENSG00000171100|Q13496-2|MTM1;ENST00000306167.11_1_X:149761076-149807431:+|nuORF ENSG00000171100|ENST00000370396|MTM1 ENSG00000171100|ENST00000370396|MTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.3641967773438 2 659.363713 1316.71287 0.91935 0.00060618 0.021195 1.3975E-05 0.94054 0.00062016 659.363209945514 87.876 0.64977 81.7 81.257 81.907 -6.1757 73 35 3 0 0 0 6.7445E-07 4 57874 57731;57859;57874;58002 133.05 93.102 1 22256000 74383 8061 49756 50825 86554;86555;86556;86557 86556 0.06718518637057969 VYITRAQLM 9 Oxidation (M) _VYITRAQLM(Oxidation (M))_ VYITRAQLM(1) VYITRAQLM(53) 0 0 1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8023071289062 2 555.802434 1109.59032 -0.17886 -9.941E-05 -0.3836 -0.00021321 -0.56246 -0.00031262 555.8022133473698 36.69 0.26036 36.441 36.293 36.554 -0.2497 35 11 4 0 0 0 0.033587 1 19236 19236 53.404 27.136 1 19756000 74384 6763 49757 50826 86558 86558 1174 0.03990358633950564 VYITRAQLM 9 Oxidation (M) _VYITRAQLM(Oxidation (M))_ VYITRAQLM(1) VYITRAQLM(46) 0 0 1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.8033447265625 2 555.802434 1109.59032 -0.062327 -3.4641E-05 0.66174 0.0003678 0.59941 0.00033316 555.8026314555859 37.048 0.53205 36.798 36.604 37.136 -0.2497 49 22 4 0 0 0 0.047788 1 19508 19508 45.7 22.963 1 13278000 74385 6763 49757 50826 86559 86559 1174 0.03990358633950564 VYITRAQLM 9 Oxidation (M) _VYITRAQLM(Oxidation (M))_ VYITRAQLM(1) VYITRAQLM(100) 0 0 1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8031616210938 2 555.802434 1109.59032 -0.0080244 -4.46E-06 0.27962 0.00015541 0.27159 0.00015095 555.8025187450784 36.393 0.26777 36.416 36.248 36.516 0.023193 26 11 3 0 0 0 0.008513 1 19250 19250 99.755 51.409 1 10178000 74386 6763 49757 50826 86560 86560 1174 0.03990358633950564 VYITRAQLM 9 Oxidation (M) _VYITRAQLM(Oxidation (M))_ VYITRAQLM(1) VYITRAQLM(66) 0 0 1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8024291992188 2 555.802434 1109.59032 -0.060929 -3.3865E-05 -0.66752 -0.00037101 -0.72845 -0.00040488 555.8024218871486 36.695 0.28271 36.716 36.599 36.881 0.021545 29 12 3 0 0 0 0.017075 1 19453 19453 66.457 33.671 1 14677000 74387 6763 49757 50826 86561 86561 1174 0.03990358633950564 VYITRAQLM 9 Oxidation (M) _VYITRAQLM(Oxidation (M))_ VYITRAQLM(1) VYITRAQLM(76) 0 0 1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.801025390625 2 555.802434 1109.59032 1.6963 0.0009428 -1.2351 -0.00068648 0.46115 0.00025631 555.801704231211 41.794 0.43719 37.186 36.923 37.36 -4.6079 66 27 3 0 0 0 0.011671 2 25071 25071;25207 75.761 28.012 1 39064000 74388 6763 49757 50826 86562;86563 86562 1174 0.03990358633950564 VYITRAQLM 9 Unmodified _VYITRAQLM_ 0 0 0 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 ENSG00000160877|ENST00000292431|NACC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.8056030273438 2 547.804977 1093.5954 1.1018 0.00060356 -0.30519 -0.00016718 0.79659 0.00043637 547.8048031713234 53.642 0.58449 47.837 47.481 48.066 -5.8042 74 37 3 0 0 0 0.021948 2 33934 33934;34063 61.602 13.853 1 128640000 74389 6763 49757 50827 86564;86565 86564 0.052346624965593946 VYIYGDMLS 9 Unmodified _VYIYGDMLS_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1727294921875 3 354.172171 1059.49468 0.38335 0.00013577 0.55404 0.00019623 0.93739 0.000332 354.1722864599553 92.781 0.3044 92.323 92.169 92.473 -0.4574 21 14 2 0 0 0 0.55775 1 50714 50714 2.2828 0 1 1081200 74390 10258 49758 50828 86566 86566 -0.032684142769085156 VYIYGISC 8 Unmodified _VYIYGISC_ 0 0 0 REV__ENSG00000115232|ENST00000397033|ITGA4 REV__ENSG00000115232|ENST00000397033|ITGA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 917.4454345703125 1 917.443717 916.43644 0.71615 0.00065703 -0.20855 -0.00019134 0.5076 0.00046569 917.4433948036226 70.604 0.42229 64.428 64.224 64.646 -6.1757 35 22 2 0 0 0 0.5953 1 46176 46176 26.341 0 1 31777000 + 74391 18960 49759 50829 86567 86567 -0.025120511315549265 VYIYGRHLYF 10 Unmodified _VYIYGRHLYF_ 0 0 0 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2384033203125 3 444.236274 1329.68699 1.1078 0.00049214 4.0689 0.0018075 5.1767 0.0022997 444.2393967394541 57.69 0.61479 57.624 57.14 57.755 -0.066036 51 30 3 0 0 0 0.33553 1 31385 31385 27.223 13.005 1 6781800 74392 1422 49760 50830 86568 86568 0.035336691854354285 VYIYQYEPY 9 Unmodified _VYIYQYEPY_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2935791015625 2 619.292422 1236.57029 0.43769 0.00027106 0.9773 0.00060523 1.415 0.00087629 619.2930427890808 95.618 0.3807 95.25 95.075 95.456 -0.36815 54 21 3 0 0 0 0.40476 2 52189 52189;52292 12.241 3.4953 1 1918400 74393 10472 49761 50831 86569;86570 86569 -0.0385311382499367 VYIYQYEPY 9 Unmodified _VYIYQYEPY_ 0 0 0 nc|ENSG00000213996|Q9BZW4-2|TM6SF2;ENSG00000213996|ENST00000389363|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 nc|ENSG00000213996|Q9BZW4-2|TM6SF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.7933349609375 2 619.292422 1236.57029 0.94937 0.00058794 -0.32151 -0.00019911 0.62786 0.00038883 619.2924328159881 100.38 0.1826 94.202 94.088 94.27 -6.1757 27 11 3 0 0 0 0.10734 1 67082 67082 32.305 0 1 91051000 74394 10472 49761 50831 86571 86571 -0.0385311382499367 VYIYRYFFL 9 Unmodified _VYIYRYFFL_ 0 0 0 ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C ENSG00000135916|ENST00000326427|ITM2C ENSG00000135916|ENST00000326427|ITM2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3458862304688 2 642.344792 1282.67503 2.0532 0.0013189 0.9344 0.00060021 2.9876 0.0019191 642.3449785689106 94.187 0.29552 94.202 94.057 94.352 0.014252 22 10 3 0 0 0 0.07916 1 52388 52388 37.974 22.127 1 1396300 74395 4756 49762 50832 86572 86572 0.04500052442244851 VYKAFVMETF 10 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ VYKAFVM(1)ETF VYKAFVM(70)ETF 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.8101806640625 2 625.809925 1249.6053 0.1021 6.3896E-05 0.13207 8.2654E-05 0.23418 0.00014655 625.8099844658514 54.101 0.3756 53.634 53.507 53.882 -0.46664 64 18 4 0 0 0 0.025861 2 29276 29276;29388 70.332 41.25 1 18233000 74396 2352 49763 50833 86573;86574 86573 408 -0.00952194288697683 VYKAFVMETF 10 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ VYKAFVM(1)ETF VYKAFVM(70)ETF 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8084106445312 2 625.809925 1249.6053 -0.17101 -0.00010702 -0.51658 -0.00032328 -0.68759 -0.0004303 625.8093134602406 53.644 0.19889 53.581 53.463 53.661 -0.063423 26 14 2 0 0 0 0.025861 1 29078 29078 70.332 47.596 1 15908000 74397 2352 49763 50833 86575 86575 408 -0.00952194288697683 VYKAFVMETF 10 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ VYKAFVM(1)ETF VYKAFVM(66)ETF 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8091430664062 2 625.809925 1249.6053 -0.085348 -5.3412E-05 -0.39958 -0.00025006 -0.48492 -0.00030347 625.8098104339462 53.832 0.29307 53.765 53.648 53.941 -0.066936 41 16 3 0 0 0 0.033218 1 29196 29196 66.457 48.31 1 13245000 74398 2352 49763 50833 86576 86576 408 -0.00952194288697683 VYKAFVMETF 10 Oxidation (M) _VYKAFVM(Oxidation (M))ETF_ VYKAFVM(1)ETF VYKAFVM(83)ETF 0 0 1 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.8096313476562 2 625.809925 1249.6053 0.71492 0.00044741 -0.48949 -0.00030633 0.22544 0.00014108 625.8096534468317 59.777 0.76384 53.663 53.452 54.216 -6.1147 81 41 3 0 0 0 0.012329 3 38477 38329;38477;38628 83.429 50.643 1 58960000 74399 2352 49763 50833 86577;86578;86579 86578 408 -0.00952194288697683 VYKAFVMETF 10 Unmodified _VYKAFVMETF_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.8136596679688 2 617.812467 1233.61038 NaN NaN NaN NaN NaN NaN NaN 67.006 1 67.024 66.524 67.524 0.018028 0 0 0 0.17724 1 36773 36773 59.368 36.632 1 74400 2352 49763 50834 86580 86580 0.002921095739111479 VYKAFVMETF 10 Unmodified _VYKAFVMETF_ 0 0 0 nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 nc|ENSG00000105677|Q9BVK8-2|TMEM147 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.813232421875 2 617.812467 1233.61038 0.87139 0.00053836 -0.49265 -0.00030437 0.37874 0.00023399 617.812337611689 79.985 1.1293 73.809 73.167 74.296 -6.1757 141 67 3 0 0 0 0.023382 4 52304 52304;52441;52571;52702 93.166 62.529 1 32078000 74401 2352 49763 50834 86581;86582;86583;86584 86581 0.002921095739111479 VYKATGEEF 9 Unmodified _VYKATGEEF_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2;ENST00000566774.1_1_16:68264768-68266536:-|nuORF ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2567749023438 2 522.25584 1042.49713 -0.14228 -7.4307E-05 0.070819 3.6985E-05 -0.071462 -3.7322E-05 522.2557605169313 29.732 0.19294 29.732 29.567 29.76 0 14 11 2 0 0 0 0.19127 1 15387 15387 24.021 8.1734 1 3216500 74402 2100 49764 50835 86585 86585 -0.022422425476179342 VYKCLSENI 9 Carbamidomethyl (C) _VYKC(Carbamidomethyl (C))LSENI_ VYKC(1)LSENI VYKC(64)LSENI 0 1 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2850341796875 2 563.284074 1124.5536 0.62575 0.00035247 -0.26366 -0.00014852 0.36209 0.00020396 563.283691686071 36.891 0.26729 36.891 36.71 36.977 0 29 12 3 0 0 0 0.01958 1 19553 19553 63.961 20.102 1 6858400 74403 1354;13208 49765 50836 86586 86586 123 -0.003699379826002769 VYKCLSENI 9 Carbamidomethyl (C) _VYKC(Carbamidomethyl (C))LSENI_ VYKC(1)LSENI VYKC(50)LSENI 0 1 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MSMS AL20221201_MKP_PDAC_01 4 563.2847290039062 2 563.284074 1124.5536 NaN NaN NaN NaN NaN NaN NaN 41.789 1 37.181 36.681 37.681 -4.6079 0 0 0 0.076083 1 25149 25149 49.554 18.918 1 74404 1354;13208 49765 50836 86587 86587 123 -0.003699379826002769 VYKDFNIRHHH 11 Unmodified _VYKDFNIRHHH_ 0 0 0 REV__ENST00000526562.5_1_11:8704757-8706293:+|nuORF REV__ENST00000526562.5_1_11:8704757-8706293:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5336608886719 4 367.191643 1464.73747 -0.56317 -0.00020679 2.1446 0.00078748 1.5814 0.00058069 367.1927020070787 19.017 0.25025 19.04 18.913 19.163 0.023106 27 14 3 0 0 0 0.74157 1 9521 9521 0.094841 0 1 2536300 + 74405 28371 49766 50837 86588 86588 0.023685915631176613 VYKDHQTITI 10 Unmodified _VYKDHQTITI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5558471679688 3 406.555672 1216.64519 -0.69295 -0.00028172 0.80047 0.00032543 0.10751 4.371E-05 406.5559797396785 31.953 0.26388 31.953 31.82 32.084 0 38 12 4 0 0 0 0.45406 1 16644 16644 18.721 5.8653 1 8377700 74406 2860 49767 50838 86589 86589 0.04553068706218255 VYKDHQTITI 10 Unmodified _VYKDHQTITI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5559997558594 3 406.555672 1216.64519 0.062314 2.5334E-05 0.69879 0.0002841 0.76111 0.00030943 406.55603214536035 31.89 0.26516 31.761 31.601 31.866 -0.12915 21 10 3 0 0 0 0.41822 1 16600 16600 20.581 11.337 1 2016900 74407 2860 49767 50838 86590 86590 0.04553068706218255 VYKDHQTITI 10 Unmodified _VYKDHQTITI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3309936523438 2 609.32987 1216.64519 0.48096 0.00029307 0.53488 0.00032592 1.0158 0.00061898 609.3301994697587 35.285 0.29223 31.19 31.075 31.367 -4.0951 30 17 2 0 0 0 0.023726 1 20456 20456 64.927 33.658 1 11327000 74408 2860 49767 50838 86591 86591 0.04553068706218255 VYKDHQTITI 10 Unmodified _VYKDHQTITI_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 406.555672 1216.64519 -0.47224 -0.00019199 0.47202 0.0001919 -0.00022164 -9.011E-08 406.55538424988026 31.712 0.083353 31.742 31.692 31.775 0.030106 -0.076797 -0.00034541 NaN 20.581 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 614910 74409 2860 49767 50838 0.04553068706218255 VYKDLLVLF 9 Unmodified _VYKDLLVLF_ 0 0 0 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 ENSG00000037637|ENST00000375592|FBXO42 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3349609375 2 555.333893 1108.65323 0.92043 0.00051115 0.068249 3.7901E-05 0.98868 0.00054905 555.333889795736 90.813 0.29141 90.85 90.692 90.983 0.036507 26 10 3 0 0 0 0.017075 1 50484 50484 66.457 14.188 1 22261000 74410 628 49768 50839 86592 86592 0.10325247693640449 VYKDLVLLL 9 Unmodified _VYKDLVLLL_ 0 0 0 nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-4|PCED1A;ENSG00000179715|ENST00000546455|PCED1B nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3419799804688 2 538.341718 1074.66888 0.37243 0.0002005 1.2034 0.00064782 1.5758 0.00084832 538.3422703972653 85.701 0.30846 85.2 85.086 85.395 -0.5015 32 14 3 0 0 0 0.20428 1 46916 46916 22.736 3.4793 1 1668800 74411 8855;4429 49769 50840 86593 86593 0.13453534210702855 VYKDLVLLL 9 Unmodified _VYKDLVLLL_ 0 0 0 nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-4|PCED1A;ENSG00000179715|ENST00000546455|PCED1B nc|ENSG00000132635|Q9H1Q7-2|PCED1A;ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.3416748046875 2 538.341718 1074.66888 -0.19886 -0.00010705 -0.35787 -0.00019265 -0.55673 -0.00029971 538.341648559202 85.046 0.26014 85.109 84.954 85.214 0.063171 14 10 2 0 0 0 0.11784 1 47086 47086 31.268 0.6318 1 9469300 74412 8855;4429 49769 50840 86594 86594 0.13453534210702855 VYKDMPETSF 10 Oxidation (M) _VYKDM(Oxidation (M))PETSF_ VYKDM(1)PETSF VYKDM(74)PETSF 0 0 1 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.77734375 2 616.778822 1231.54309 -1.0014 -0.00061764 -0.67116 -0.00041396 -1.6726 -0.0010316 616.7783734625178 32.461 0.16628 32.461 32.414 32.58 0 28 11 3 0 0 0 0.021614 1 16957 16957 74.2 46.571 1 13338000 74413 4210 49770 50841 86595 86595 743 -0.06341965427714058 VYKDMPETSF 10 Oxidation (M) _VYKDM(Oxidation (M))PETSF_ VYKDM(1)PETSF VYKDM(61)PETSF 0 0 1 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MSMS AL20221201_MKP_PDAC_01 4 616.7786865234375 2 616.778822 1231.54309 NaN NaN NaN NaN NaN NaN NaN 37.072 1 32.788 32.288 33.288 -4.2835 0 0 0 0.035368 1 21718 21718 61.09 38.432 1 74414 4210 49770 50841 86596 86596 743 -0.06341965427714058 VYKDMPETSF 10 Unmodified _VYKDMPETSF_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MSMS AL20221201_MKP_PDAC_01 4 608.7820434570312 2 608.781364 1215.54818 NaN NaN NaN NaN NaN NaN NaN 48.105 1 42.871 42.371 43.371 -5.2339 0 0 0 0.01496 1 29933 29933 97.741 59.59 1 74415 4210 49770 50842 86597 86597 -0.0509766156508249 VYKDSFELKF 10 Unmodified _VYKDSFELKF_ 0 0 0 ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A ENSG00000139842|ENST00000375440|CUL4A ENSG00000139842|ENST00000375440|CUL4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2278442382812 3 425.892173 1274.65469 0.054732 2.331E-05 0.23252 9.9029E-05 0.28725 0.00012234 425.8921664824901 56.946 0.31857 56.46 56.265 56.583 -0.48554 43 14 4 0 0 0 0.34435 1 30909 30909 24.882 17.404 1 9106300 74416 5194 49771 50843 86598 86598 0.028348369917466698 VYKDSFELKF 10 Unmodified _VYKDSFELKF_ 0 0 0 ENSG00000139842|ENST00000375440|CUL4A;nc|ENSG00000139842|Q13619-2|CUL4A ENSG00000139842|ENST00000375440|CUL4A ENSG00000139842|ENST00000375440|CUL4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.8919372558594 3 425.892173 1274.65469 0.31526 0.00013427 -0.21948 -9.3475E-05 0.095778 4.0791E-05 425.89203800599853 56.621 0.24002 56.552 56.438 56.678 -0.068741 26 11 3 0 0 0 0.093652 1 30800 30800 48.073 41.036 1 9600700 74417 5194 49771 50843 86599 86599 0.028348369917466698 VYKEAMNHL 9 Unmodified _VYKEAMNHL_ 0 0 0 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 ENSG00000178700|ENST00000314636|DHFR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.85595703125 3 368.855065 1103.54336 1.3784 0.00050844 -0.47541 -0.00017536 0.90301 0.00033308 368.8549112892996 28.756 0.25689 25.608 25.421 25.677 -3.1482 18 12 2 0 0 0 0.015445 1 16027 16027 53.404 38.999 1 14880000 74418 8767 49772 50844 86600 86600 -0.00426500917183148 VYKEEEESF 9 Unmodified _VYKEEEESF_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF nc|ENSG00000132321|Q86XH1-5|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2609252929688 2 580.261319 1158.50808 NaN NaN NaN NaN NaN NaN NaN 63.205 1 63.205 62.705 63.705 0 0 0 0 0.84369 1 35257 35257 2.3027 0 1 74419 4389 49773 50845 86601 86601 -0.06482884963998004 VYKEEEESF 9 Unmodified _VYKEEEESF_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF nc|ENSG00000132321|Q86XH1-5|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.1772766113281 3 387.176638 1158.50808 1.7731 0.00068652 0.57393 0.00022221 2.3471 0.00090873 387.1768219061413 34.019 0.29069 30.034 29.842 30.133 -3.9853 31 15 3 0 0 0 0.30562 1 19536 19536 16.149 3.9084 1 10928000 74420 4389 49773 50845 86602 86602 -0.06482884963998004 VYKEEEESF 9 Unmodified _VYKEEEESF_ 0 0 0 nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF nc|ENSG00000132321|Q86XH1-5|IQCA1 nc|ENSG00000132321|Q86XH1-5|IQCA1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 387.176638 1158.50808 1.7731 0.00068652 0.57393 0.00022221 2.3471 0.00090873 387.1768219061413 34.019 0.29069 30.034 29.842 30.133 -3.9853 -0.066588 -0.0007409 NaN 16.149 31 15 3 NaN NaN NaN NaN 0 NaN NaN 0 10928000 74421 4389 49773 50845 -0.06482884963998004 VYKEHFQDDVF 11 Unmodified _VYKEHFQDDVF_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.5601806640625 3 476.226103 1425.65648 0.16322 7.7728E-05 -0.19161 -9.125E-05 -0.028394 -1.3522E-05 476.2258680032895 42.123 0.28545 42.123 41.975 42.26 0 34 14 3 0 0 0 0.55668 1 22758 22758 13.535 10.904 1 22135000 74422 2369 49774 50846 86603 86603 -0.03932153990308507 VYKEHFQDDVF 11 Unmodified _VYKEHFQDDVF_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 713.8358764648438 2 713.835517 1425.65648 -0.099002 -7.0671E-05 -0.1051 -7.5023E-05 -0.2041 -0.00014569 713.835452480306 42.109 0.20681 42.109 42.011 42.218 0 14 10 2 0 0 0 0.018102 1 22798 22798 47.732 35.491 1 7383800 74423 2369 49774 50846 86604 86604 -0.03932153990308507 VYKEHFQDDVF 11 Unmodified _VYKEHFQDDVF_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.5589294433594 3 476.226103 1425.65648 1.0673 0.00050828 0.15894 7.5691E-05 1.2263 0.00058397 476.22632103260565 47.307 0.41515 42.227 42.033 42.448 -5.0805 68 27 3 0 0 0 0.60536 2 29230 29230;29360 11.065 6.6591 1 46551000 74424 2369 49774 50846 86605;86606 86605 -0.03932153990308507 VYKEHFQDDVF 11 Unmodified _VYKEHFQDDVF_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MSMS AL20221201_MKP_PDAC_01 4 713.834228515625 2 713.835517 1425.65648 0.82289 0.00058741 -0.49098 -0.00035048 0.33191 0.00023693 713.8350336309041 47.311 0.36094 42.23 42.053 42.414 -5.0805 44 23 3 0 0 0 0.024946 2 29295 29295;29428 74.772 56.625 1 17495000 74425 2369 49774 50846 86607;86608 86607 -0.03932153990308507 VYKEHFQDDVF 11 Unmodified _VYKEHFQDDVF_ 0 0 0 ENSG00000105835|ENST00000222553|NAMPT;ENST00000393618.5_1_7:105910735-105925330:-|nuORF;ENST00000489358.5_1_7:105912543-105925330:-|nuORF;ENST00000486949.5_1_7:105912936-105925330:-|nuORF ENSG00000105835|ENST00000222553|NAMPT ENSG00000105835|ENST00000222553|NAMPT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 476.226103 1425.65648 0.14337 6.8278E-05 -0.44608 -0.00021243 -0.3027 -0.00014416 476.2261031164189 42.435 0.13336 42.128 42.046 42.179 -0.30682 -0.031193 -0.00058419 NaN 13.535 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 8412100 74426 2369 49774 50846 -0.03932153990308507 VYKEMRSQRRA 11 Unmodified _VYKEMRSQRRA_ 0 0 0 REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO REV__nc|ENSG00000171992|Q8N3V7-3|SYNPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.5918884277344 3 475.257743 1422.7514 -0.13464 -6.3986E-05 -0.026756 -1.2716E-05 -0.16139 -7.6702E-05 475.5920259772904 33.014 0.27321 32.855 32.686 32.959 -0.15918 28 10 4 0 0 0 0.70147 1 17185 17185 4.1166 0.52957 1 5250000 + 74427 22619 49775 50847 86609 86609 0.056935009999051545 VYKENLVDGF 10 Unmodified _VYKENLVDGF_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000492185.5_1_6:31920080-31921650:-|nuORF;ENST00000488426.5_1_6:31920080-31922695:-|nuORF nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.3067626953125 2 592.303321 1182.59209 0.48388 0.0002866 -0.10758 -6.3719E-05 0.3763 0.00022288 592.302629936376 51.443 0.28102 51.443 51.302 51.583 0 24 12 3 0 0 0 0.012329 1 28407 28407 83.429 51.123 1 5883100 74428 10273 49776 50848 86610 86610 0.008096909235746352 VYKENLVDGF 10 Unmodified _VYKENLVDGF_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000492185.5_1_6:31920080-31921650:-|nuORF;ENST00000488426.5_1_6:31920080-31922695:-|nuORF nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.304443359375 2 592.303321 1182.59209 0.37035 0.00021936 0.95519 0.00056576 1.3255 0.00078512 592.3042421438596 51.985 0.2502 51.552 51.381 51.631 -0.43367 17 12 2 0 0 0 0.16361 1 28051 28051 38.176 18.919 1 2241300 74429 10273 49776 50848 86611 86611 0.008096909235746352 VYKENLVDGF 10 Unmodified _VYKENLVDGF_ 0 0 0 nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE;ENST00000492185.5_1_6:31920080-31921650:-|nuORF;ENST00000488426.5_1_6:31920080-31922695:-|nuORF nc|ENSG00000204356|P18615-4|NELFE nc|ENSG00000204356|P18615-4|NELFE MSMS AL20221201_MKP_PDAC_01 4 592.3040771484375 2 592.303321 1182.59209 NaN NaN NaN NaN NaN NaN NaN 57.659 1 51.632 51.132 52.132 -6.0275 0 0 0 0.019026 1 36881 36881 79.427 43.815 1 74430 10273 49776 50848 86612 86612 0.008096909235746352 VYKETCISF 9 Carbamidomethyl (C) _VYKETC(Carbamidomethyl (C))ISF_ VYKETC(1)ISF VYKETC(77)ISF 0 1 0 ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8 ENST00000552128.2_1_12:71519116-71532942:-|nuORF ENST00000552128.2_1_12:71519116-71532942:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7789306640625 2 573.778625 1145.5427 0.83864 0.0004812 -0.00068607 -3.9365E-07 0.83796 0.0004808 573.7787207905095 51.455 0.543 45.806 45.528 46.071 -5.649 87 33 4 0 0 0 0.011291 2 32474 32350;32474 76.825 38.851 1 249680000 74431 3996 49777 50849 86613;86614 86614 404 -0.024253403568991416 VYKETRLFL 9 Unmodified _VYKETRLFL_ 0 0 0 ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT ENSG00000149313|ENST00000278618|AASDHPPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.2294616699219 3 390.229008 1167.66519 0.32028 0.00012498 1.0572 0.00041254 1.3775 0.00053752 390.2294569201207 48.118 0.27799 48.079 47.946 48.224 -0.038643 33 13 3 0 0 0 0.14 1 25940 25940 33.445 13.03 1 4965000 74432 6003 49778 50850 86615 86615 0.08806864436837714 VYKGAEVAHF 10 Unmodified _VYKGAEVAHF_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E;nc|ENSG00000135318|P21589-2|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1974792480469 3 374.197708 1119.57129 -0.42675 -0.00015969 -0.23171 -8.6706E-05 -0.65846 -0.00024639 374.19756378713527 30.814 0.30403 30.814 30.67 30.974 0 41 14 4 0 0 0 0.38225 1 16009 16009 22.658 18.129 1 17841000 74433 4689 49779 50851 86616 86616 0.01629145334572968 VYKGAEVAHF 10 Unmodified _VYKGAEVAHF_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E;nc|ENSG00000135318|P21589-2|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.79443359375 2 560.792924 1119.57129 0.97867 0.00054883 -0.47891 -0.00026857 0.49976 0.00028026 560.7928517781278 34.367 0.29702 30.272 30.16 30.457 -4.0951 24 16 2 0 0 0 0.28721 1 19837 19837 39.95 27.418 1 11018000 74434 4689 49779 50851 86617 86617 0.01629145334572968 VYKGAEVAHF 10 Unmodified _VYKGAEVAHF_ 0 0 0 ENSG00000135318|ENST00000257770|NT5E;nc|ENSG00000135318|P21589-2|NT5E ENSG00000135318|ENST00000257770|NT5E ENSG00000135318|ENST00000257770|NT5E MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.1980590820312 3 374.197708 1119.57129 1.3433 0.00050265 -1.459 -0.00054596 -0.11576 -4.3316E-05 374.1973464905759 34.391 0.42889 30.296 30.074 30.503 -4.0951 90 24 5 0 0 0 0.13297 1 19849 19849 41.956 33.21 1 67442000 74435 4689 49779 50851 86618 86618 0.01629145334572968 VYKGEEATF 9 Unmodified _VYKGEEATF_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2557983398438 2 522.25584 1042.49713 -0.017596 -9.1895E-06 0.23613 0.00012332 0.21853 0.00011413 522.255735023243 29.463 0.21556 29.463 29.328 29.544 0 24 10 3 0 0 0 0.025842 1 15272 15272 57.722 7.789 1 10972000 74436 1157 49780 50852 86619 86619 -0.022422425476406715 VYKGEEATF 9 Unmodified _VYKGEEATF_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2567138671875 2 522.25584 1042.49713 0.79153 0.00041338 0.44956 0.00023479 1.2411 0.00064817 522.2560708890092 33.179 0.33974 29.322 29.158 29.498 -3.8562 31 21 2 0 0 0 0.091924 1 19052 19052 34.932 7.3033 1 20062000 74437 1157 49780 50852 86620 86620 -0.022422425476406715 VYKGRRKYS 9 Unmodified _VYKGRRKYS_ 0 0 0 nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36;ENST00000455724.5_1_2:219537552-219538396:+|nuORF;ENST00000468026.1_1_2:219537552-219537744:+|nuORF;ENST00000473557.1_1_2:219537552-219538357:+|nuORF nc|ENSG00000163482|Q9NRP7-2|STK36 nc|ENSG00000163482|Q9NRP7-2|STK36 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2239379882812 3 386.224368 1155.65128 0.55518 0.00021443 1.0239 0.00039544 1.579 0.00060986 386.22480090104307 15.468 0.20446 12.94 12.824 13.029 -2.5273 121 45 3 0 0 0 0.49766 1 7883 7883 7.609 0.97858 1 14195000 74438 7000 49781 50853 86621 86621 0.07967631728411106 VYKICAWMQL 10 Unmodified _VYKICAWMQL_ 0 0 0 ENSG00000197753|ENST00000360215|LHFPL5;chr6:35797289-35797392|106|338.87|0.0|25.01|+|ENST00000651132|LHFPL5,LHFPL5;ENSG00000187416|ENST00000424859|LHFPL3;ENSG00000156959|ENST00000287585|LHFPL4 ENSG00000197753|ENST00000360215|LHFPL5 ENSG00000197753|ENST00000360215|LHFPL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.8698425292969 3 418.883967 1253.63007 NaN NaN NaN NaN NaN NaN NaN 29.906 1 29.825 29.325 30.325 -0.080429 0 0 0 0.98914 1 15504 15504 0.77653 0 1 74439 118 49782 50854 86622 86622 0.013401623130221196 VYKILSTHL 9 Unmodified _VYKILSTHL_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.8847961425781 3 358.54997 1072.62808 -0.072498 -2.5994E-05 0.5779 0.0002072 0.5054 0.00018121 358.55022105063347 45.248 0.23523 45.22 45.107 45.343 -0.028011 28 12 3 0 0 0 0.010818 1 24273 24273 61.602 44.159 1 46926000 74440 4646 49783 50855 86623 86623 0.09467192891088416 VYKILSTHL 9 Unmodified _VYKILSTHL_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5508728027344 3 358.54997 1072.62808 1.7703 0.00063474 0.049094 1.7603E-05 1.8194 0.00065234 358.5499863175312 50.473 0.43632 44.934 44.663 45.1 -5.5391 65 27 3 0 0 0 0.03568 2 31544 31544;31686 47.594 34.722 1 111220000 74441 4646 49783 50855 86624;86625 86624 0.09467192891088416 VYKILSTHL 9 Unmodified _VYKILSTHL_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.322021484375 2 537.321317 1072.62808 0.98777 0.00053075 0.14342 7.7061E-05 1.1312 0.00060781 537.321487731462 50.493 0.34325 44.953 44.725 45.068 -5.5391 47 21 3 0 0 0 0.0074135 1 31631 31631 110.67 70.725 1 42097000 74442 4646 49783 50855 86626 86626 0.09467192891088416 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8330078125 2 565.83406 1129.65357 0.0029253 1.6553E-06 -0.42133 -0.00023841 -0.41841 -0.00023675 565.8337527590984 55.745 0.23374 55.676 55.548 55.782 -0.068737 19 11 2 0 0 0 0.2143 1 30352 30352 21.747 5.8995 1 6982400 74443 7315 49784 50856 86627 86627 0.09392667413499112 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5580749511719 3 377.558466 1129.65357 -0.28556 -0.00010782 0.17149 6.4746E-05 -0.11408 -4.3071E-05 377.55847357050874 55.708 0.28844 55.64 55.532 55.821 -0.068741 39 14 3 0 0 0 0.49272 1 30357 30357 4.897 1.31 1 25908000 74444 7315 49784 50856 86628 86628 0.09392667413499112 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5588989257812 3 377.558466 1129.65357 1.443 0.00054482 -0.40081 -0.00015133 1.0422 0.00039349 377.5584263614151 60.123 0.47105 54.008 53.745 54.216 -6.1147 38 24 2 0 0 0 0.25681 1 38622 38622 13.615 7.423 1 23505000 74445 7315 49784 50856 86629 86629 0.09392667413499112 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5593566894531 3 377.558466 1129.65357 1.7072 0.00064458 -0.09382 -3.5422E-05 1.6134 0.00060916 377.5583799233537 86.503 0.81093 80.327 79.977 80.788 -6.1757 95 43 3 0 0 0 0.07916 2 56915 56915;57034 34.932 23.437 1 23522000 74446 7315 49784 50856 86630;86631 86630 0.09392667413499112 VYKKSIFVF 9 Unmodified _VYKKSIFVF_ 0 0 0 nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 nc|ENSG00000165264|O95139-2|NDUFB6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.8341064453125 2 565.83406 1129.65357 1.376 0.0007786 0.46161 0.0002612 1.8376 0.0010398 565.8342656326696 86.458 0.68495 80.283 80.103 80.788 -6.1757 60 36 2 0 0 0 0.085319 1 56965 56965 36.506 14.76 1 12118000 74447 7315 49784 50856 86632 86632 0.09392667413499112 VYKKTKYAF 9 Unmodified _VYKKTKYAF_ 0 0 0 ENSG00000243646|ENST00000290200|IL10RB;ENST00000493295.5_1_21:34640622-34668659:+|nuORF ENSG00000243646|ENST00000290200|IL10RB ENSG00000243646|ENST00000290200|IL10RB MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2221984863281 3 383.221853 1146.64373 1.6232 0.00062204 0.12411 4.756E-05 1.7473 0.0006696 383.22185713747496 21.665 0.21821 18.931 18.757 18.976 -2.7348 24 13 3 0 0 0 0.48396 1 11585 11585 8.4443 5.1247 1 1807200 74448 10709 49785 50857 86633 86633 0.0762747940814279 VYKLCTQTI 9 Carbamidomethyl (C) _VYKLC(Carbamidomethyl (C))TQTI_ VYKLC(1)TQTI VYKLC(76)TQTI 0 1 0 ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3024291992188 2 563.302267 1124.58998 NaN NaN NaN NaN NaN NaN NaN 42.109 1 41.802 41.302 42.302 -0.30682 0 0 0 0.02218 1 22350 22350 75.761 15.687 1 74449 15467 49786 50858 86634 86634 998 0.03266938914111961 VYKLCTQTI 9 Carbamidomethyl (C) _VYKLC(Carbamidomethyl (C))TQTI_ VYKLC(1)TQTI VYKLC(96)TQTI 0 1 0 ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.3035278320312 2 563.302267 1124.58998 0.76393 0.00043032 -0.34806 -0.00019606 0.41587 0.00023426 563.3022807755751 46.888 0.38982 41.808 41.654 42.043 -5.0805 84 51 2 0 0 0 0.0082353 2 29187 29045;29187 96.111 38.64 1 46632000 74450 15467 49786 50858 86635;86636 86636 998 0.03266938914111961 VYKLCTQTI 9 Carbamidomethyl (C) _VYKLC(Carbamidomethyl (C))TQTI_ 0 1 0 ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF ENST00000570041.1_2_16:53532500-53534232:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 563.302267 1124.58998 0.20359 0.00011468 0.056304 3.1716E-05 0.25989 0.0001464 563.8044869502809 41.812 0.097992 41.811 41.743 41.841 -0.0017929 0.0012827 0.00042342 NaN 96.111 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 3203700 74451 15467 49786 50858 998 0.03266938914111961 VYKLHRETF 9 Unmodified _VYKLHRETF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.2210693359375 3 398.220624 1191.64004 -0.40682 -0.00016201 0.76293 0.00030381 0.3561 0.00014181 398.220851452824 24.08 0.16247 24.08 23.995 24.157 0 12 7 2 0 0 0 0.50598 1 12300 12300 7.1017 3.2254 1 574040 74452 2282 49787 50859 86637 86637 0.05188809634273639 VYKLHRETF 9 Unmodified _VYKLHRETF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2200622558594 3 398.220624 1191.64004 0.13263 5.2817E-05 0.41245 0.00016425 0.54509 0.00021707 398.22067932797876 24.294 0.17374 24.293 24.183 24.357 -0.0016766 16 7 3 0 0 0 0.08907 1 12408 12408 35.612 25.848 1 6786200 74453 2282 49787 50859 86638 86638 0.05188809634273639 VYKLHRETF 9 Unmodified _VYKLHRETF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2201843261719 3 398.220624 1191.64004 0.026337 1.0488E-05 0.76728 0.00030555 0.79362 0.00031603 398.2206233045115 24.009 0.17325 24.03 23.944 24.118 0.021185 14 6 3 0 0 0 0.43305 1 12386 12386 10.899 1.9227 1 2211900 74454 2282 49787 50859 86639 86639 0.05188809634273639 VYKLHRETF 9 Unmodified _VYKLHRETF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.2209777832031 3 398.220624 1191.64004 0.63593 0.00025324 -0.39221 -0.00015619 0.24372 9.7054E-05 398.22041618593335 27.004 0.34424 23.967 23.796 24.14 -3.0365 45 17 3 0 0 0 0.24903 1 14918 14918 19.626 6.1073 1 42995000 74455 2282 49787 50859 86640 86640 0.05188809634273639 VYKNFPQL 8 Unmodified _VYKNFPQL_ 0 0 0 ENSG00000166471|ENST00000528080|TMEM41B;nc|ENSG00000166471|Q5BJD5-3|TMEM41B;nc|ENSG00000166471|Q5BJD5-2|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B ENSG00000166471|ENST00000528080|TMEM41B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.77978515625 2 504.779285 1007.54402 NaN NaN NaN NaN NaN NaN NaN 50.293 1 50.244 49.744 50.744 -0.048824 0 0 0 0.29791 1 27195 27195 63.563 33.338 1 74456 7493 49788 50860 86641 86641 0.04054661794191361 VYKPAQNSW 9 Unmodified _VYKPAQNSW_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7780151367188 2 546.777274 1091.53999 0.32716 0.00017889 0.36684 0.00020058 0.69401 0.00037947 546.7774112134371 31.352 0.24668 31.352 31.194 31.441 0 25 11 3 0 0 0 0.044011 1 16307 16307 47.749 29.614 1 1845700 74457 3531;7361 49789 50861 86642 86642 -0.002114276995371256 VYKPAQNSW 9 Unmodified _VYKPAQNSW_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7772827148438 2 546.777274 1091.53999 0.10796 5.9029E-05 0.85211 0.00046591 0.96007 0.00052494 546.7776706000183 31.34 0.22394 31.238 31.109 31.333 -0.10269 20 8 3 0 0 0 0.0082661 1 16274 16274 92.491 59.706 1 7519300 74458 3531;7361 49789 50861 86643 86643 -0.002114276995371256 VYKPAQNSW 9 Unmodified _VYKPAQNSW_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7769775390625 2 546.777274 1091.53999 -0.16656 -9.1071E-05 0.87252 0.00047708 0.70596 0.00038601 546.7773086106484 31.156 0.21317 31.186 31.059 31.272 0.030104 14 8 2 0 0 0 0.45045 1 16291 16291 10.074 5.3179 1 1204500 74459 3531;7361 49789 50861 86644 86644 -0.002114276995371256 VYKPAQNSW 9 Unmodified _VYKPAQNSW_ 0 0 0 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.7774658203125 2 546.777274 1091.53999 0.83017 0.00045392 -0.51728 -0.00028284 0.31289 0.00017108 546.7767983388356 35.084 0.52194 30.989 30.718 31.24 -4.0951 73 30 3 0 0 0 0.0085164 2 20347 20232;20347 99.799 59.849 1 51973000 74460 3531;7361 49789 50861 86645;86646 86646 -0.002114276995371256 VYKPMHDFL 9 Unmodified _VYKPMHDFL_ 0 0 0 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 ENSG00000148248|ENST00000371989|SURF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8638916015625 3 383.86356 1148.56885 1.4937 0.00057337 -1.5991 -0.00061385 -0.10543 -4.0471E-05 383.8628746161819 50.558 0.17957 45.019 44.872 45.051 -5.5391 19 11 2 0 0 0 0.27545 1 31716 31716 18.373 15.053 1 20203000 74461 5909 49790 50862 86647 86647 0.0005097360526633565 VYKPPGLKW 9 Unmodified _VYKPPGLKW_ 0 0 0 ENST00000460320.1_1_9:131078140-131084687:-|nuORF;ENSG00000167112|ENST00000372890|TRUB2 ENST00000460320.1_1_9:131078140-131084687:-|nuORF ENST00000460320.1_1_9:131078140-131084687:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 363.2149047851562 3 363.21481 1086.6226 NaN NaN NaN NaN NaN NaN NaN 51.065 1 45.416 44.916 45.916 -5.649 0 0 0 0.20153 1 32104 32104 28.495 15.622 1 74462 7574 49791 50863 86648 86648 0.08275514099273096 VYKPVSIYL 9 Unmodified _VYKPVSIYL_ 0 0 0 ENST00000367210.2_2_1:203771435-203771690:+|nuORF ENST00000367210.2_2_1:203771435-203771690:+|nuORF ENST00000367210.2_2_1:203771435-203771690:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.319580078125 2 541.318243 1080.62193 0.28922 0.00015656 0.1468 7.9467E-05 0.43602 0.00023603 541.3184643785874 61.292 0.29906 61.249 61.125 61.424 -0.04351 22 14 2 0 0 0 0.060956 1 33471 33471 53.833 23.196 1 6672200 74463 12227 49792 50864 86649 86649 0.08484674659553093 VYKSEFIDL 9 Unmodified _VYKSEFIDL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2952270507812 2 557.294965 1112.57538 0.8629 0.00048089 0.97271 0.00054208 1.8356 0.001023 557.295104737698 60.365 0.44569 60.365 60.068 60.514 0 39 19 3 0 0 0 0.013609 2 33621 33621;33725 70.332 20.399 1 7540400 74464 3863 49793 50865 86650;86651 86650 0.023591900376231933 VYKSEFIDL 9 Unmodified _VYKSEFIDL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2938232421875 2 557.294965 1112.57538 0.026478 1.4756E-05 -0.27099 -0.00015102 -0.24451 -0.00013627 557.2951618215446 60.796 0.26611 60.306 60.168 60.435 -0.48932 27 12 3 0 0 0 0.091924 1 33068 33068 34.932 10.722 1 12221000 74465 3863 49793 50865 86652 86652 0.023591900376231933 VYKSRAPQF 9 Unmodified _VYKSRAPQF_ 0 0 0 ENST00000463472.1_1_22:50969089-50969740:-|nuORF;ENST00000469660.1_1_22:50969089-50970101:-|nuORF;ENST00000468249.1_1_22:50968911-50969740:-|nuORF;ENST00000405135.5_1_22:50968911-50969740:-|nuORF;ENSG00000177989|ENST00000329363|ODF3B ENST00000463472.1_1_22:50969089-50969740:-|nuORF ENST00000463472.1_1_22:50969089-50969740:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.869873046875 3 365.869703 1094.58728 0.12156 4.4474E-05 -0.12005 -4.3924E-05 0.0015013 5.4927E-07 365.8696841763525 23.889 0.20577 23.91 23.762 23.968 0.021183 14 8 2 0 0 0 0.49272 1 12297 12297 4.897 0 1 2452600 74466 13694 49794 50866 86653 86653 0.04376851571464613 VYKSRAPQF 9 Unmodified _VYKSRAPQF_ 0 0 0 ENST00000463472.1_1_22:50969089-50969740:-|nuORF;ENST00000469660.1_1_22:50969089-50970101:-|nuORF;ENST00000468249.1_1_22:50968911-50969740:-|nuORF;ENST00000405135.5_1_22:50968911-50969740:-|nuORF;ENSG00000177989|ENST00000329363|ODF3B ENST00000463472.1_1_22:50969089-50969740:-|nuORF ENST00000463472.1_1_22:50969089-50969740:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 365.869703 1094.58728 1.0595 0.00038764 0.4539 0.00016607 1.5134 0.00055371 365.86972301885544 26.478 0.41297 23.527 23.261 23.674 -2.9511 -0.19186 0.00026036 NaN 4.897 33 21 2 NaN NaN NaN NaN 0 NaN NaN 0 11438000 74467 13694 49794 50866 0.04376851571464613 VYKTGVTHYF 10 Unmodified _VYKTGVTHYF_ 0 0 0 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.544921875 3 405.544996 1213.61316 -0.44199 -0.00017925 0.18889 7.6603E-05 -0.2531 -0.00010264 405.5450224805288 36.452 0.19177 36.473 36.323 36.515 0.021545 20 8 3 0 0 0 0.39779 1 19279 19279 23.79 20.203 1 4304100 74468 9293 49795 50867 86654 86654 0.014897010230924934 VYKTGVTHYF 10 Unmodified _VYKTGVTHYF_ 0 0 0 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.5453796386719 3 405.544996 1213.61316 1.3566 0.00055016 -0.41794 -0.00016949 0.93865 0.00038067 405.5448770588073 40.946 0.36678 36.339 36.18 36.547 -4.6079 37 22 2 0 0 0 0.18021 1 24511 24511 37.075 21.536 1 12594000 74469 9293 49795 50867 86655 86655 0.014897010230924934 VYKTGVTHYF 10 Unmodified _VYKTGVTHYF_ 0 0 0 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 ENSG00000184860|ENST00000328945|SDR42E1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 405.544996 1213.61316 -0.34772 -0.00014101 1.1465 0.00046494 0.79874 0.00032393 405.5452460113027 36.749 0.12675 36.5 36.427 36.554 -0.2497 0.062492 0.0013679 NaN 37.075 10 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1921700 74470 9293 49795 50867 0.014897010230924934 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 363.2106323242188 3 363.209725 1086.60735 0.032707 1.188E-05 1.0739 0.00039005 1.1066 0.00040193 363.21017663474333 37.721 0.29677 37.721 37.549 37.846 0 50 14 4 0 0 0 0.25681 2 20063 20063;20171 13.615 3.2254 1 29709000 74471 2229 49796 50868 86656;86657 86656 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3112182617188 2 544.310949 1086.60735 0.16275 8.8588E-05 0.3973 0.00021625 0.56005 0.00030484 544.3110486165533 37.712 0.31632 37.712 37.549 37.865 0 41 15 4 0 0 0 0.029718 1 20064 20064 55.503 26.421 1 13260000 74472 2229 49796 50868 86658 86658 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.2097778320312 3 363.209725 1086.60735 0.0099857 3.6269E-06 0.027155 9.863E-06 0.037141 1.349E-05 363.20968490339027 37.967 0.33994 37.696 37.562 37.902 -0.27133 43 16 4 0 0 0 0.14 1 19949 19949 21.59 11.44 1 29514000 74473 2229 49796 50868 86659 86659 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3107299804688 2 544.310949 1086.60735 -0.20059 -0.00010918 0.17186 9.3543E-05 -0.028734 -1.564E-05 544.311054459324 37.974 0.28004 37.703 37.562 37.842 -0.27133 34 13 4 0 0 0 0.044296 1 19973 19973 47.594 23.574 1 10002000 74474 2229 49796 50868 86660 86660 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2098388671875 3 363.209725 1086.60735 -0.15115 -5.4897E-05 0.69653 0.00025299 0.54539 0.00019809 363.2100059715015 37.591 0.15803 37.608 37.515 37.673 0.01704 12 7 2 0 0 0 0.32871 1 19977 19977 10.8 4.1691 1 4356200 74475 2229 49796 50868 86661 86661 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.2112731933594 3 363.209725 1086.60735 1.4531 0.00052777 0.10238 3.7185E-05 1.5555 0.00056496 363.20976834812654 42.354 0.68509 37.669 37.217 37.902 -4.6846 117 44 4 0 0 0 0.32871 3 25439 25439;25578;25715 10.8 3.7624 1 227370000 74476 2229 49796 50868 86662;86663;86664 86662 0.06750602511419856 VYKTHIDVI 9 Unmodified _VYKTHIDVI_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3143920898438 2 544.310949 1086.60735 0.68513 0.00037293 0.39272 0.00021376 1.0779 0.00058669 544.3112623581326 42.351 0.45227 37.667 37.406 37.858 -4.6846 83 29 4 0 0 0 0.0094097 2 25452 25452;25590 82.529 54.901 1 99938000 74477 2229 49796 50868 86665;86666 86665 0.06750602511419856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(100)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7935180664062 2 587.794275 1173.574 0.0075215 4.4211E-06 -0.31709 -0.00018638 -0.30957 -0.00018196 587.7942247190804 40.1 0.32462 40.1 39.952 40.276 0 62 15 6 0 0 0 0.0085386 2 21495 21495;21597 100.09 50.536 1 108390000 74478 8546;15482 49797 50869 86667;86668 86667 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(100)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7946166992188 2 587.794275 1173.574 -0.23149 -0.00013607 -0.24436 -0.00014363 -0.47585 -0.0002797 587.7942326319293 40.554 0.30801 40.554 40.412 40.72 0 58 16 4 0 0 0 0.0085386 2 21749 21749;21864 100.09 54.07 1 59347000 74479 8546;15482 49797 50869 86669;86670 86669 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(110)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7947998046875 2 587.794275 1173.574 0.55648 0.0003271 -0.53551 -0.00031477 0.020967 1.2325E-05 587.7940706623559 40.507 0.41685 40.204 40.044 40.461 -0.30304 79 19 6 0 0 0 0.0061223 2 21369 21369;21475 114.2 48.179 1 193300000 74480 8546;15482 49797 50869 86671;86672 86671 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(86)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7943725585938 2 587.794275 1173.574 0.27029 0.00015887 -0.5459 -0.00032088 -0.27561 -0.000162 587.7940922545732 40.989 0.44777 40.686 40.439 40.887 -0.30304 82 21 5 0 0 0 0.0089732 2 21740 21637;21740 86.332 48.156 1 218700000 74481 8546;15482 49797 50869 86673;86674 86674 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(90)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7944946289062 2 587.794275 1173.574 0.53574 0.0003149 -0.62617 -0.00036806 -0.090438 -5.3159E-05 587.7941372024114 40.171 0.33339 40.176 40.026 40.36 0.0050545 56 15 5 0 0 0 0.0085366 2 21476 21374;21476 90.135 48.179 1 44167000 74482 8546;15482 49797 50869 86675;86676 86676 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(100)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7944946289062 2 587.794275 1173.574 0.58554 0.00034418 -1.0274 -0.00060388 -0.44182 -0.0002597 587.7937632895166 40.679 0.32951 40.684 40.549 40.878 0.0050545 52 15 5 0 0 0 0.0085386 2 21670 21670;21778 100.09 58.135 1 63982000 74483 8546;15482 49797 50869 86677;86678 86677 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(93)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7947387695312 2 587.794275 1173.574 0.28219 0.00016587 0.84861 0.00049881 1.1308 0.00066467 587.7950010908081 45.345 0.48351 40.39 40.099 40.582 -4.9549 123 32 5 0 0 0 0.0081887 2 27764 27631;27764 93.166 43.612 1 413630000 74484 8546;15482 49797 50869 86679;86680 86680 1451 -0.005847673228117856 VYKTIMEQF 9 Oxidation (M) _VYKTIM(Oxidation (M))EQF_ VYKTIM(1)EQF VYKTIM(77)EQF 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7953491210938 2 587.794275 1173.574 0.67286 0.0003955 0.61235 0.00035994 1.2852 0.00075544 587.7949503175703 45.841 0.57164 40.887 40.669 41.241 -4.9549 119 37 5 0 0 0 0.011291 3 28252 28110;28252;28398 76.825 42.722 1 337330000 74485 8546;15482 49797 50869 86681;86682;86683 86682 1451 -0.005847673228117856 VYKTIMEQF 9 Unmodified _VYKTIMEQF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7968139648438 2 579.796817 1157.57908 0.48235 0.00027966 -0.37392 -0.0002168 0.10843 6.2865E-05 579.7966855605955 55.556 0.43872 55.078 54.841 55.279 -0.47798 79 20 5 0 0 0 0.0082475 2 30063 30063;30166 92.653 50.814 1 58213000 74486 8546;15482 49797 50870 86684;86685 86684 0.006595365398197828 VYKTIMEQF 9 Unmodified _VYKTIMEQF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7948608398438 2 579.796817 1157.57908 0.57649 0.00033425 -0.1594 -9.242E-05 0.41709 0.00024183 579.7967415110126 55.135 0.39963 55.066 54.898 55.298 -0.068737 68 19 5 0 0 0 0.0089732 2 29929 29929;30028 86.332 48.156 1 62571000 74487 8546;15482 49797 50870 86686;86687 86686 0.006595365398197828 VYKTIMEQF 9 Unmodified _VYKTIMEQF_ 0 0 0 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;ENST00000575989.5_1_17:79009009-79027584:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7971801757812 2 579.796817 1157.57908 1.1134 0.00064552 -0.5066 -0.00029373 0.60676 0.0003518 579.7966552829691 60.982 1.2934 54.834 54.495 55.788 -6.1478 245 67 5 0 0 0 0.0082475 6 39590 39093;39212;39337;39461;39590;39724 106.94 61.514 1 1490999999.9999998 74488 8546;15482 49797 50870 86688;86689;86690;86691;86692;86693 86692 0.006595365398197828 VYKVKEELL 9 Unmodified _VYKVKEELL_ 0 0 0 nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF;ENST00000537653.5_1_12:14576849-14628955:+|nuORF nc|ENSG00000171681|Q6VMQ6-2|ATF7IP nc|ENSG00000171681|Q6VMQ6-2|ATF7IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.225830078125 3 374.225264 1119.65396 0.34751 0.00013005 0.90425 0.00033839 1.2518 0.00046844 374.22573941370996 38.506 0.23643 38.506 38.402 38.639 0 26 12 3 0 0 0 0.2143 1 20583 20583 20.415 8.9198 1 2940300 74489 8126 49798 50871 86694 86694 0.09892042342721652 VYKVLGTFL 9 Unmodified _VYKVLGTFL_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3140258789062 2 520.312961 1038.61137 0.16702 8.6904E-05 1.7208 0.00089536 1.8878 0.00098227 520.313793770602 73.272 0.28672 73.314 73.205 73.491 0.041733 33 12 3 0 0 0 0.044011 1 40371 40371 47.749 22.349 1 5081300 74490 5381 49799 50872 86695 86695 0.09360692005134297 VYKVLGTFL 9 Unmodified _VYKVLGTFL_ 0 0 0 nc|ENSG00000141934|O43688-3|PLPP2;ENSG00000141934|ENST00000434325|PLPP2;nc|ENSG00000141934|O43688-2|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 nc|ENSG00000141934|O43688-3|PLPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.3134155273438 2 520.312961 1038.61137 1.1407 0.00059353 -0.25494 -0.00013265 0.88577 0.00046088 520.3128008538799 95.074 0.34698 88.898 88.693 89.04 -6.1757 44 18 3 0 0 0 0.0086904 2 62925 62925;63051 107.19 29.038 1 24877000 74491 5381 49799 50872 86696;86697 86696 0.09360692005134297 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3054809570312 2 549.305136 1096.59572 0.1573 8.6405E-05 -1.9139 -0.0010513 -1.7566 -0.0009649 549.3042780460752 73.093 0.98357 73.135 72.442 73.426 0.041725 85 46 2 0 0 0 0.0088231 4 40247 39932;40036;40138;40247 114.65 72.809 1 14090000 74492 8688 49800 50873 86698;86699;86700;86701 86701 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3384399414062 2 549.305136 1096.59572 0.30676 0.0001685 3.055 0.0016781 3.3618 0.0018466 549.3073202014299 74.057 0.91023 74.101 73.963 74.874 0.043983 80 40 3 0 0 0 0.091436 1 41016 41016 34.402 12.865 1 4716300 74493 8688 49800 50873 86702 86702 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 549.3052978515625 2 549.305136 1096.59572 NaN NaN NaN NaN NaN NaN NaN 84.843 1 78.667 78.167 79.167 -6.1757 0 0 0 0.037345 1 55837 55837 69.105 29.148 1 74494 8688 49800 50873 86703 86703 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 549.3045043945312 2 549.305136 1096.59572 NaN NaN NaN NaN NaN NaN NaN 85.719 1 79.543 79.043 80.043 -6.1757 0 0 0 0.083147 1 56476 56476 51.63 28.894 1 74495 8688 49800 50873 86704 86704 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 549.3020629882812 2 549.305136 1096.59572 NaN NaN NaN NaN NaN NaN NaN 85.904 1 79.728 79.228 80.228 -6.1757 0 0 0 0.43047 1 56608 56608 25.399 14.575 1 74496 8688 49800 50873 86705 86705 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 549.3078002929688 2 549.305136 1096.59572 NaN NaN NaN NaN NaN NaN NaN 86.481 1 80.305 79.805 80.805 -6.1757 0 0 0 0.022336 1 57013 57013 82.529 53.448 1 74497 8688 49800 50873 86706 86706 0.05128405488062526 VYKVPPFTF 9 Unmodified _VYKVPPFTF_ 0 0 0 ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 ENSG00000177469|ENST00000357037|CAVIN1 MSMS AL20221201_MKP_PDAC_01 4 549.3082275390625 2 549.305136 1096.59572 NaN NaN NaN NaN NaN NaN NaN 86.685 1 80.509 80.009 81.009 -6.1757 0 0 0 0.042175 1 57147 57147 66.457 40.189 1 74498 8688 49800 50873 86707 86707 0.05128405488062526 VYKVVGNLL 9 Unmodified _VYKVVGNLL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.810546875 2 502.810585 1003.60662 -0.13203 -6.6388E-05 0.62459 0.00031405 0.49255 0.00024766 502.8111511862587 58.381 0.26379 57.89 57.741 58.005 -0.49079 32 12 3 0 0 0 0.031062 1 31720 31720 54.774 20.671 1 3724800 74499 9204 49801 50874 86708 86708 0.10495807862389483 VYKVVGNLL 9 Unmodified _VYKVVGNLL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8114013671875 2 502.810585 1003.60662 0.82009 0.00041235 -1.709 -0.00085932 -0.88894 -0.00044697 502.8103078201341 58.024 0.59237 57.958 57.775 58.368 -0.066036 93 29 6 0 0 0 0.00856 2 31536 31536;31643 100.37 42.9 1 60283000 74500 9204 49801 50874 86709;86710 86709 0.10495807862389483 VYKVVGNLL 9 Unmodified _VYKVVGNLL_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.8116455078125 2 502.810585 1003.60662 1.4273 0.00071764 -1.3688 -0.00068827 0.058427 2.9377E-05 502.81059518130564 63.996 0.98964 57.821 57.143 58.132 -6.1757 136 54 5 0 0 0 0.0082281 3 41593 41323;41463;41593 92.822 35.351 1 119680000 74501 9204 49801 50874 86711;86712;86713 86713 0.10495807862389483 VYKYIVQKL 9 Unmodified _VYKYIVQKL_ 0 0 0 ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1 ENST00000481915.5_1_3:32574447-32611850:-|nuORF ENST00000481915.5_1_3:32574447-32611850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2371520996094 3 385.237504 1152.69068 0.062447 2.4057E-05 -1.3763 -0.00053021 -1.3139 -0.00050616 385.23656793163843 41.108 0.36829 41.106 40.97 41.338 -0.0017929 25 17 2 0 0 0 0.07916 1 21980 21980 41.956 32.412 1 6324100 74502 5624 49802 50875 86714 86714 0.12044338959276502 VYKYIVQKL 9 Unmodified _VYKYIVQKL_ 0 0 0 ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENSG00000144635|ENST00000273130|DYNC1LI1 ENST00000481915.5_1_3:32574447-32611850:-|nuORF ENST00000481915.5_1_3:32574447-32611850:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.5301208496094 3 385.237504 1152.69068 0.8375 0.00032264 0.013359 5.1463E-06 0.85086 0.00032778 385.23748004720784 45.426 0.26586 40.471 40.332 40.598 -4.9549 25 17 2 0 0 0 0.20883 1 27782 27782 8.1555 3.6267 1 9437800 74503 5624 49802 50875 86715 86715 0.12044338959276502 VYKYPFELI 9 Unmodified _VYKYPFELI_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000588696.5_1_17:75139678-75139750:+|nuORF ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.3243408203125 2 586.323525 1170.6325 0.79082 0.00046368 1.1017 0.00064596 1.8925 0.0011096 586.3240410557086 80.584 0.39095 80.092 79.88 80.271 -0.49247 28 15 3 0 0 0 0.34134 1 44121 44121 21.747 10.106 1 1169600 74504 4157 49803 50876 86716 86716 0.05400657313998636 VYLAEEGVL 9 Unmodified _VYLAEEGVL_ 0 0 0 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 REV__nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2666931152344 2 496.768583 991.522613 0.30283 0.00015044 -0.61008 -0.00030307 -0.30726 -0.00015263 496.76819687615745 56.774 0.61298 56.774 56.543 57.156 0 77 26 4 0 0 0 0.3554 1 31754 31754 14.582 3.4672 1 40641000 + 74505 18891 49804 50877 86717 86717 0.026512319748235313 VYLAKLGNFF 10 Unmodified _VYLAKLGNFF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3296508789062 2 586.329142 1170.64373 1.041 0.00061039 -0.0062319 -3.6539E-06 1.0348 0.00060674 586.3290616304247 80.916 0.47322 80.976 80.764 81.237 0.059723 50 18 4 0 0 0 0.017277 2 44786 44682;44786 78.149 33.742 1 7586300 74506 5256 49805 50878 86718;86719 86719 0.06523479408133426 VYLAKLGNFF 10 Unmodified _VYLAKLGNFF_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1;ENST00000559682.1_1_15:90969387-90972913:+|nuORF;ENST00000560418.1_2_15:90931626-90974461:+|nuORF ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.330078125 2 586.329142 1170.64373 1.1709 0.0006865 0.021093 1.2367E-05 1.1919 0.00069887 586.3291159131298 97.832 0.17837 91.656 91.587 91.765 -6.1757 34 11 4 0 0 0 0.0029268 1 64819 64819 104.8 19.158 1 125990000 74507 5256 49805 50878 86720 86720 0.06523479408133426 VYLALLPPD 9 Unmodified _VYLALLPPD_ 0 0 0 ENSG00000159228|ENST00000290349|CBR1;ENST00000530908.5_1_21:37444388-37445177:+|nuORF;ENSG00000159231|ENST00000290354|CBR3 ENSG00000159228|ENST00000290349|CBR1 ENSG00000159228|ENST00000290349|CBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.291259765625 2 500.789318 999.564084 0.15556 7.7904E-05 -0.66863 -0.00033484 -0.51307 -0.00025694 500.7888486511869 93.398 0.31984 92.94 92.771 93.09 -0.4574 18 13 2 0 0 0 0.5029 1 50990 50990 7.2892 2.0586 1 239160 74508 6638 49806 50879 86721 86721 0.06428412734146605 VYLCRREL 8 Unmodified _VYLCRREL_ 0 0 0 REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1952819824219 3 351.195421 1050.56443 -0.56825 -0.00019957 -0.70712 -0.00024834 -1.2754 -0.0004479 351.19530168518725 34.598 0.45986 34.598 34.422 34.882 0 33 23 3 0 0 0 0.70294 1 18213 18213 18.146 7.3224 1 2222300 + 74509 27476 49807 50880 86722 86722 0.04117509182333379 VYLCRREL 8 Unmodified _VYLCRREL_ 0 0 0 REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 351.175048828125 3 351.195421 1050.56443 -0.32361 -0.00011365 -0.70359 -0.0002471 -1.0272 -0.00036075 351.1950934759748 34.746 0.23722 34.555 34.44 34.677 -0.19131 15 10 2 0 0 0 8.7369 1 18200 18200 3.5965 0 1 1517600 + 74510 27476 49807 50880 86723 86723 0.04117509182333379 VYLCRREL 8 Unmodified _VYLCRREL_ 0 0 0 REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF REV__ENST00000470184.1_1_7:100179334-100179876:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 351.195421 1050.56443 -0.56825 -0.00019957 -0.70712 -0.00024834 -1.2754 -0.0004479 351.19530168518725 34.598 0.45986 34.598 34.422 34.882 0 0.021562 -1.2517E-06 NaN 18.146 33 23 3 NaN NaN NaN NaN 0 NaN NaN 0 2222300 + 74511 27476 49807 50880 0.04117509182333379 VYLDAHGE 8 Unmodified _VYLDAHGE_ 0 0 0 ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-3|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3 ENSG00000144357|ENST00000272793|UBR3 ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.2141418457031 2 452.213975 902.413397 0.018279 8.2662E-06 -0.12986 -5.8727E-05 -0.11159 -5.0461E-05 452.2138265753024 22.923 0.22432 22.923 22.832 23.056 0 18 12 2 0 0 0 0.74163 1 11662 11662 13.508 0.97634 1 775940 74512 5601 49808 50881 86724 86724 -0.04171353924664345 VYLDCLQTF 9 Carbamidomethyl (C) _VYLDC(Carbamidomethyl (C))LQTF_ VYLDC(1)LQTF VYLDC(61)LQTF 0 1 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7786254882812 2 579.778625 1157.5427 0.44261 0.00025662 -0.55069 -0.00031928 -0.10807 -6.2659E-05 579.7789584280711 82.38 0.47226 76.204 75.986 76.458 -6.1757 53 25 3 0 0 0 0.022193 2 54068 54068;54195 61.357 31.133 1 24672000 74513 9273 49809 50882 86725;86726 86725 865 -0.02977340356892455 VYLDEPIKI 9 Unmodified _VYLDEPIKI_ 0 0 0 nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.313232421875 2 545.313158 1088.61176 0.21722 0.00011845 0.046739 2.5487E-05 0.26396 0.00014394 545.3131242111349 63.972 0.32132 63.972 63.779 64.1 0 40 12 4 0 0 0 0.044042 2 35638 35638;35743 60.074 23.947 1 16894000 74514 7046 49810 50883 86727;86728 86727 0.07100066934322058 VYLDEPIKI 9 Unmodified _VYLDEPIKI_ 0 0 0 nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP nc|ENSG00000163681|Q14BN4-2|SLMAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.3140258789062 2 545.313158 1088.61176 0.43541 0.00023743 0.63285 0.0003451 1.0683 0.00058253 545.3134958259678 64.424 0.32367 63.939 63.779 64.102 -0.48512 38 14 3 0 0 0 0.12357 1 35128 35128 39.95 10.868 1 8888600 74515 7046 49810 50883 86729 86729 0.07100066934322058 VYLDGILQI 9 Unmodified _VYLDGILQI_ 0 0 0 nc|ENSG00000164542|Q8NCT3|MATCAP2;nc|ENSG00000164542|Q8NCT3-5|MATCAP2;nc|ENSG00000164542|Q8NCT3-3|MATCAP2;nc|ENSG00000164542|Q8NCT3-2|MATCAP2;ENSG00000164542|ENST00000440378|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 nc|ENSG00000164542|Q8NCT3|MATCAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.30029296875 2 517.30005 1032.58555 1.3718 0.00070965 -1.2161 -0.0006291 0.15571 8.0551E-05 517.2997577140618 100.11 0.17751 93.936 93.819 93.996 -6.1757 25 10 3 0 0 0 0.052168 1 66862 66862 44.407 15.92 1 34710000 74516 16344 49811 50884 86730 86730 0.07055797762882321 VYLDGIVRI 9 Unmodified _VYLDGIVRI_ 0 0 0 ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1 ENST00000563918.5_1_16:67210716-67213197:-|nuORF ENST00000563918.5_1_16:67210716-67213197:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.3135986328125 2 524.313492 1046.61243 0.48807 0.0002559 -0.296 -0.0001552 0.19207 0.00010071 524.3132757027211 72.24 0.30305 71.764 71.615 71.918 -0.47609 31 13 3 0 0 0 0.044011 1 39524 39524 47.749 23.728 1 4427600 74517 9764 49812 50885 86731 86731 0.09098906374060789 VYLDGIVRI 9 Unmodified _VYLDGIVRI_ 0 0 0 ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1 ENST00000563918.5_1_16:67210716-67213197:-|nuORF ENST00000563918.5_1_16:67210716-67213197:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3131713867188 2 524.313492 1046.61243 0.60047 0.00031484 0.32995 0.000173 0.93042 0.00048783 524.3135057204096 71.708 0.33512 71.747 71.579 71.914 0.039024 34 15 3 0 0 0 0.044011 1 39451 39451 47.749 23.728 1 4098100 74518 9764 49812 50885 86732 86732 0.09098906374060789 VYLDGIVRI 9 Unmodified _VYLDGIVRI_ 0 0 0 ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF;ENSG00000196123|ENST00000563902|MATCAP1 ENST00000563918.5_1_16:67210716-67213197:-|nuORF ENST00000563918.5_1_16:67210716-67213197:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.314208984375 2 524.313492 1046.61243 0.87413 0.00045832 -1.2301 -0.00064494 -0.35595 -0.00018663 524.3130580559681 84.194 0.9283 78.019 77.422 78.35 -6.1757 79 50 2 0 0 0 0.018301 4 55194 55130;55194;55316;55439 65.235 30.992 1 17698000 74519 9764 49812 50885 86733;86734;86735;86736 86734 0.09098906374060789 VYLDHAGATL 10 Unmodified _VYLDHAGATL_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2772216796875 2 530.277106 1058.53966 0.86414 0.00045823 0.093882 4.9784E-05 0.95802 0.00050802 530.2773442396218 42.501 0.42197 42.501 42.26 42.682 0 38 20 3 0 0 0 3.1238E-05 1 23016 23016 123.45 85.477 1 4633600 74520 1164 49813 50886 86737 86737 0.012731525806202626 VYLDHAGATLF 11 Unmodified _VYLDHAGATLF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.8106079101562 2 603.811313 1205.60807 -0.16634 -0.00010044 -0.55013 -0.00033218 -0.71647 -0.00043261 603.8107987338861 62.528 0.31565 62.528 62.411 62.727 0 45 16 4 0 0 0 0.038129 2 34856 34856;34961 75.761 61.179 1 9938000 74521 1164 49814 50887 86738;86739 86738 0.013493971604702892 VYLDHAGATLF 11 Unmodified _VYLDHAGATLF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.8116455078125 2 603.811313 1205.60807 0.44063 0.00026606 -0.82681 -0.00049924 -0.38618 -0.00023318 603.8107816261142 63.012 0.599 62.526 62.306 62.905 -0.48617 88 28 5 0 0 0 0.038129 2 34398 34299;34398 75.761 37.585 1 226890000 74522 1164 49814 50887 86740;86741 86741 0.013493971604702892 VYLDHAGATLF 11 Unmodified _VYLDHAGATLF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8111572265625 2 603.811313 1205.60807 0.22765 0.00013746 -0.49936 -0.00030152 -0.27171 -0.00016406 603.8108870030868 62.619 0.35833 62.597 62.433 62.791 -0.021618 57 18 4 0 0 0 0.063019 2 34291 34177;34291 69.105 30.929 1 54484000 74523 1164 49814 50887 86742;86743 86743 0.013493971604702892 VYLDHAGATLF 11 Unmodified _VYLDHAGATLF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3112182617188 2 603.811313 1205.60807 0.39984 0.00024143 0.45745 0.00027622 0.8573 0.00051765 603.8115065552608 68.712 0.98235 62.536 62.129 63.112 -6.1757 163 56 4 0 0 0 0.020907 5 44650 44650;44775;44906;45029;45179 79.596 60.074 1 450920000 74524 1164 49814 50887 86744;86745;86746;86747;86748 86744 0.013493971604702892 VYLDHAGATLF 11 Unmodified _VYLDHAGATLF_ 0 0 0 ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS ENSG00000075643|ENST00000261326|MOCOS MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8120727539062 2 603.811313 1205.60807 0.51867 0.00031318 0.027748 1.6754E-05 0.54642 0.00032994 603.8113753244588 70.738 1.3088 64.562 63.914 65.222 -6.1757 166 69 3 0 0 0 0.00017946 7 46005 45872;46005;46127;46252;46365;46492;46619 126.57 90.06 1 126810000 74525 1164 49814 50887 86749;86750;86751;86752;86753;86754;86755 86750 0.013493971604702892 VYLDITDRL 9 Unmodified _VYLDITDRL_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.307373046875 2 554.305864 1106.59717 0.37603 0.00020843 0.44545 0.00024692 0.82148 0.00045535 554.3061605374314 65.382 0.17473 65.382 65.272 65.447 0 11 6 2 0 0 0 0.18144 1 36480 36480 24.991 5.629 1 773630 74526 1324 49815 50888 86756 86756 0.048139947861727705 VYLDITDRL 9 Unmodified _VYLDITDRL_ 0 0 0 nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B nc|ENSG00000081377|O60729-2|CDC14B nc|ENSG00000081377|O60729-2|CDC14B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.3050537109375 2 554.305864 1106.59717 0.22687 0.00012575 -1.5838 -0.00087789 -1.3569 -0.00075214 554.304725065997 65.856 0.23288 65.372 65.222 65.455 -0.48428 15 9 2 0 0 0 0.047788 1 35946 35946 45.7 12.914 1 4010200 74527 1324 49815 50888 86757 86757 0.048139947861727705 VYLDKFIRL 9 Unmodified _VYLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.5694274902344 3 389.569253 1165.68593 0.22471 8.7542E-05 -0.31951 -0.00012447 -0.094792 -3.6928E-05 389.56906861670956 67.428 0.40967 67.446 67.277 67.687 0.018028 79 20 5 0 0 0 0.037253 2 36962 36962;37061 51.415 31.001 1 237940000 74528 4179 49816 50889 86758;86759 86758 0.1097145481651296 VYLDKFIRL 9 Unmodified _VYLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.850830078125 2 583.850242 1165.68593 0.71322 0.00041641 -0.18175 -0.00010612 0.53147 0.0003103 583.8500108261037 67.428 0.31224 67.446 67.297 67.609 0.018036 45 15 4 0 0 0 0.037253 1 36995 36995 65.235 36.748 1 26446000 74529 4179 49816 50889 86760 86760 0.1097145481651296 VYLDKFIRL 9 Unmodified _VYLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5694274902344 3 389.569253 1165.68593 1.0679 0.00041604 -0.21507 -8.3786E-05 0.85287 0.00033225 389.5691260607268 92.536 0.60403 86.361 86.166 86.77 -6.1757 124 37 4 0 0 0 0.053952 3 61232 61110;61232;61352 43.982 23.567 1 370200000 74530 4179 49816 50889 86761;86762;86763 86762 0.1097145481651296 VYLDKFIRL 9 Unmodified _VYLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8506469726562 2 583.850242 1165.68593 0.70346 0.00041071 1.1111 0.0006487 1.8145 0.0010594 583.8501250862147 92.551 0.54137 86.375 86.185 86.726 -6.1757 119 33 5 0 0 0 0.0033237 3 61132 61132;61257;61377 149.91 78.78 1 83958000 74531 4179 49816 50889 86764;86765;86766 86764 0.1097145481651296 VYLDMSKNRI 10 Unmodified _VYLDMSKNRI_ 0 0 0 nc|ENSG00000033122|Q96NW7-2|LRRC7;nc|ENSG00000033122|Q96NW7|LRRC7;ENSG00000033122|ENST00000651989|LRRC7;ENST00000415775.2_1_1:70225872-70503822:+|nuORF nc|ENSG00000033122|Q96NW7-2|LRRC7 nc|ENSG00000033122|Q96NW7-2|LRRC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5592346191406 3 413.556907 1237.64889 0.539 0.00022291 3.3916 0.0014026 3.9306 0.0016255 413.8921299845604 46.217 0.16499 46.183 46.059 46.224 -0.033421 11 7 2 0 0 0 0.60623 1 24847 24847 6.1918 1.7857 1 3564300 74532 599 49817 50890 86767 86767 0.03957415208446946 VYLDYIRVI 9 Unmodified _VYLDYIRVI_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENST00000469881.1_1_11:3697391-3700990:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3349609375 2 577.334424 1152.6543 0.52835 0.00030503 -0.07188 -4.1499E-05 0.45647 0.00026353 577.3344706169246 78.121 0.33949 78.174 77.987 78.327 0.052452 36 13 3 0 0 0 0.047788 2 43093 43093;43205 45.7 22.963 1 13228000 74533 2734 49818 50891 86768;86769 86768 0.08407462062564264 VYLDYIRVI 9 Unmodified _VYLDYIRVI_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENST00000469881.1_1_11:3697391-3700990:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3341064453125 2 577.334424 1152.6543 1.1367 0.00065628 1.3722 0.0007922 2.5089 0.0014485 577.3353684915992 94.002 0.29385 87.826 87.622 87.916 -6.1757 39 16 3 0 0 0 0.010611 2 62168 62168;62300 78.728 26.46 1 22110000 74534 2734 49818 50891 86770;86771 86770 0.08407462062564264 VYLDYIRVI 9 Unmodified _VYLDYIRVI_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENST00000469881.1_1_11:3697391-3700990:-|nuORF ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 577.334424 1152.6543 0.093497 5.3979E-05 0.92777 0.00053564 1.0213 0.00058961 577.3351602316721 78.721 0.23892 78.235 78.084 78.323 -0.48596 0.030944 0.00089513 NaN 45.7 19 8 3 NaN NaN NaN NaN 0 NaN NaN 0 833490 74535 2734 49818 50891 0.08407462062564264 VYLEDSGHTL 10 Unmodified _VYLEDSGHTL_ 0 0 0 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 ENSG00000123131|ENST00000379341|PRDX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2781372070312 2 567.277303 1132.54005 NaN NaN NaN NaN NaN NaN NaN 40.044 1 40.044 39.544 40.544 0 0 0 0 0.0094776 1 21503 21503 133.7 95.551 1 74536 3683 49819 50892 86772 86772 -0.02091472490178603 VYLEGIQSFF 10 Unmodified _VYLEGIQSFF_ 0 0 0 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8080444335938 2 601.808239 1201.60193 -0.00065386 -3.935E-07 0.55832 0.000336 0.55766 0.00033561 601.8085504376071 76.818 0.35655 76.868 76.676 77.033 0.05011 28 14 2 0 0 0 0.38092 1 42336 42336 22.736 2.3217 1 16371000 + 74537 23397 49820 50893 86773 86773 0.009188789289282795 VYLEGIQSFF 10 Unmodified _VYLEGIQSFF_ 0 0 0 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 601.808239 1201.60193 -0.54087 -0.0003255 0.14759 8.8821E-05 -0.39328 -0.00023668 601.8082705276236 77.374 0.19065 76.891 76.765 76.956 -0.4826 0.011757 -0.00037121 NaN 22.736 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 975890 + 74538 23397 49820 50893 0.009188789289282795 VYLEGIQSFF 10 Unmodified _VYLEGIQSFF_ 0 0 0 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 REV__ENSG00000184117|ENST00000216121|NIPSNAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 601.808239 1201.60193 -0.00065386 -3.935E-07 0.55832 0.000336 0.55766 0.00033561 601.8085504376071 76.818 0.35655 76.868 76.676 77.033 0.05011 -0.011757 0.00012315 NaN 22.736 28 14 2 NaN NaN NaN NaN 0 NaN NaN 0 16371000 + 74539 23397 49820 50893 0.009188789289282795 VYLEKFMTF 9 Oxidation (M) _VYLEKFM(Oxidation (M))TF_ VYLEKFM(1)TF VYLEKFM(56)TF 0 0 1 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2999267578125 2 597.299193 1192.58383 0.047395 2.8309E-05 1.1034 0.00065905 1.1508 0.00068736 597.2998040983596 61.531 0.27902 61.041 60.901 61.18 -0.48932 20 12 2 0 0 0 0.028475 1 33508 33508 56.177 31.503 1 2918100 74540 2002 49821 50894 86774 86774 343 -0.004755793174126666 VYLEKFMTF 9 Oxidation (M) _VYLEKFM(Oxidation (M))TF_ VYLEKFM(1)TF VYLEKFM(96)TF 0 0 1 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.2998046875 2 597.299193 1192.58383 0.15864 9.4756E-05 -3.2678 -0.0019518 -3.1091 -0.0018571 597.2971033646847 61.128 0.3968 61.085 60.927 61.324 -0.04351 47 19 3 0 0 0 0.0082353 1 33326 33326 96.111 63.325 1 17401000 74541 2002 49821 50894 86775 86775 343 -0.004755793174126666 VYLEKFMTF 9 Unmodified _VYLEKFMTF_ 0 0 0 ENSG00000101972|ENST00000371145|STAG2;nc|ENSG00000101972|Q8N3U4|STAG2 ENSG00000101972|ENST00000371145|STAG2 ENSG00000101972|ENST00000371145|STAG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3021240234375 2 589.301736 1176.58892 0.30361 0.00017892 -0.022573 -1.3303E-05 0.28104 0.00016562 589.3009496481945 77.981 0.33376 78.034 77.843 78.177 0.052452 23 13 3 0 0 0 0.015445 1 43065 43065 68.081 18.412 1 3796100 74542 2002 49821 50895 86776 86776 0.007687245452189018 VYLEKKQDV 9 Unmodified _VYLEKKQDV_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3128662109375 2 561.313689 1120.61282 NaN NaN NaN NaN NaN NaN NaN 26.177 1 26.177 25.677 26.677 0 0 0 0 0.46232 1 13448 13448 17.113 0 1 74543 4421 49822 50896 86777 86777 0.05734281303239186 VYLEKTCDW 9 Carbamidomethyl (C) _VYLEKTC(Carbamidomethyl (C))DW_ VYLEKTC(1)DW VYLEKTC(70)DW 0 1 0 ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP ENSG00000197746|ENST00000394936|PSAP ENSG00000197746|ENST00000394936|PSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.2806396484375 2 607.281531 1212.54851 0.75849 0.00046062 -1.2642 -0.00076775 -0.50575 -0.00030713 607.2806069036693 50.076 0.39322 44.537 44.332 44.725 -5.5391 53 25 3 0 0 0 0.013609 1 31334 31334 70.332 38.027 1 29627000 74544 9995 49823 50897 86778 86778 908 -0.049262418452372 VYLENKEQI 9 Unmodified _VYLENKEQI_ 0 0 0 nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 nc|ENSG00000109534|Q9NY12-2|GAR1 MSMS AL20221201_MKP_PDAC_01 4 568.3023071289062 2 568.303321 1134.59209 NaN NaN NaN NaN NaN NaN NaN 40.016 1 35.487 34.987 35.987 -4.5294 0 0 0 0.053277 1 23836 23836 47.749 3.8904 1 74545 2655 49824 50898 86779 86779 0.030176909235706262 VYLERCRQL 9 Carbamidomethyl (C) _VYLERC(Carbamidomethyl (C))RQL_ VYLERC(1)RQL VYLERC(62)RQL 0 1 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8877258300781 3 412.888768 1235.64448 0.74353 0.000307 -1.5283 -0.00063101 -0.78476 -0.00032402 412.8883493378217 31.697 0.24854 28.001 27.927 28.175 -3.6958 15 13 2 0 0 0 0.021948 2 17979 17979;17985 61.602 37.801 1 27174000 74546 9717 49825 50899 86780;86781 86780 890 0.03607950785522007 VYLFICPVFF 10 Unmodified _VYLFICPVFF_ 0 0 0 REV__OR4C6|p.M257V|1|0.16|ENSG00000181903|chr11:55665935-55665935|A/G|missense_variant REV__OR4C6|p.M257V|1|0.16|ENSG00000181903|chr11:55665935-55665935|A/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5558776855469 3 416.555956 1246.64604 0.40331 0.000168 -1.2442 -0.00051829 -0.84091 -0.00035029 416.55494471472855 43.17 0.22422 43.154 43.042 43.266 -0.015667 18 10 3 0 0 0 0.57332 1 23132 23132 10.8 0 1 12561000 + 74547 29950 49826 50900 86782 86782 0.03258191821555556 VYLFMRCL 8 Unmodified _VYLFMRCL_ 0 0 0 ENST00000427755.2_1_11:33037501-33047701:+|nuORF ENST00000427755.2_1_11:33037501-33047701:+|nuORF ENST00000427755.2_1_11:33037501-33047701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.2685546875 2 522.772091 1043.52963 0.35114 0.00018357 -0.22352 -0.00011685 0.12762 6.6714E-05 522.772373137514 89.875 0.36962 89.373 89.217 89.586 -0.50171 28 19 2 0 0 0 0.80143 1 49110 49110 5.7604 0.46354 1 687920 74548 13197 49827 50901 86783 86783 0.009605500500356356 VYLFTPKNF 9 Unmodified _VYLFTPKNF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7;nc|ENSG00000196116|Q8NHU6-3|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.8084106445312 2 564.808042 1127.60153 0.83217 0.00047001 0.23353 0.0001319 1.0657 0.00060192 565.3095745938123 67.151 0.28958 67.169 67.028 67.318 0.018028 37 14 3 0 0 0 0.0090524 1 36853 36853 85.642 56.56 1 5888100 74549 9762 49828 50902 86784 86784 0.042835039997498825 VYLGAMTNF 9 Unmodified _VYLGAMTNF_ 0 0 0 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 ENSG00000023318|ENST00000262455|ERP44 MSMS AL20221201_MKP_PDAC_01 4 508.249267578125 2 508.249503 1014.48445 NaN NaN NaN NaN NaN NaN NaN 80.5 1 74.324 73.824 74.824 -6.1757 0 0 0 0.40995 1 52816 52816 19.439 0 1 74550 540 49829 50903 86785 86785 -0.0222097721150476 VYLGAVNAL 9 Unmodified _VYLGAVNAL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 919.5270385742188 1 919.524744 918.517468 0.25182 0.00023155 0.64844 0.00059625 0.90026 0.00082781 919.5257681287875 67.46 0.31537 66.978 66.78 67.096 -0.48219 23 13 2 0 0 0 0.12841 1 36801 36801 30.225 5.5509 1 1903100 74551 9843 49830 50904 86786 86786 0.054949729028408 VYLGAVNAL 9 Unmodified _VYLGAVNAL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2667236328125 2 460.26601 918.517468 0.3599 0.00016565 1.6215 0.00074632 1.9814 0.00091197 460.26672192072516 67.485 0.2523 67.002 66.822 67.075 -0.48218 18 10 2 0 0 0 0.1492 1 36833 36833 28.173 10.038 1 1306500 74552 9843 49830 50904 86787 86787 0.054949729028408 VYLGLTDPC 9 Unmodified _VYLGLTDPC_ 0 0 0 ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF ENSG00000268043|ENST00000698835|NBPF12 ENSG00000268043|ENST00000698835|NBPF12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7415771484375 2 490.741511 979.468469 0.44811 0.00021991 -0.76549 -0.00037566 -0.31738 -0.00015575 490.74103809272344 59.707 0.32466 59.707 59.555 59.879 0 38 14 3 0 0 0 0.39863 1 33228 33228 12.532 0 1 6973000 74553 10870 49831 50905 86788 86788 -0.02208683448429838 VYLGSSRNH 9 Unmodified _VYLGSSRNH_ 0 0 0 REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF REV__ENST00000527145.1_1_11:44071584-44081467:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.764404296875 2 516.764697 1031.51484 0.31979 0.00016526 -0.17231 -8.9044E-05 0.14748 7.6211E-05 516.7646143633247 58.938 0.35506 58.938 58.768 59.123 0 39 15 3 0 0 0 0.1773 1 32864 32864 25.399 1.1894 1 7076300 + 74554 24215 49832 50906 86789 86789 0.0003451749792020564 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.8767700195312 3 408.876857 1223.60874 0.62369 0.00025501 0.23655 9.672E-05 0.86024 0.00035173 408.87689815199815 47.718 0.27183 47.365 47.203 47.474 -0.3526 36 12 4 0 0 0 0.044011 1 25552 25552 37.075 24.202 1 11162000 74555 10025;15465 49833 50907 86790 86790 0.005882366001742412 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.8770751953125 3 408.876857 1223.60874 0.44594 0.00018233 0.54742 0.00022383 0.99336 0.00040616 408.877081351725 47.484 0.30291 47.445 47.237 47.54 -0.038643 49 13 5 0 0 0 0.039985 2 25624 25523;25624 45.74 39.548 1 35311000 74556 10025;15465 49833 50907 86791;86792 86792 0.005882366001742412 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8135986328125 2 612.811648 1223.60874 0.95576 0.0005857 0.65703 0.00040264 1.6128 0.00098833 612.8121430821153 47.453 0.17887 47.414 47.319 47.498 -0.038643 14 7 2 0 0 0 0.078314 1 25582 25582 38.176 23.337 1 1514100 74557 10025;15465 49833 50907 86793 86793 0.005882366001742412 VYLHDFQRF 9 Unmodified _VYLHDFQRF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2;ENST00000569929.5_1_16:81888133-81917132:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.877197265625 3 408.876857 1223.60874 1.0624 0.00043439 -0.10993 -4.4948E-05 0.95247 0.00038944 408.8769282401463 52.606 0.35309 46.872 46.707 47.06 -5.7345 45 19 3 0 0 0 0.032796 2 33172 33172;33308 42.312 35.682 1 56007000 74558 10025;15465 49833 50907 86794;86795 86794 0.005882366001742412 VYLHEGCLAC 10 Unmodified _VYLHEGCLAC_ 0 0 0 REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.251220703125 2 554.25172 1106.48889 0.67129 0.00037206 -0.79488 -0.00044057 -0.1236 -6.8503E-05 554.2511827436365 53.602 0.43996 53.15 52.943 53.383 -0.45173 52 21 4 0 0 0 0.31022 1 28987 28987 26.884 5.137 1 17160000 + 74559 27248 49834 50908 86796 86796 -0.0600983606027512 VYLHLRQTW 9 Unmodified _VYLHLRQTW_ 0 0 0 nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;ENST00000588393.5_1_19:10742408-10745595:+|nuORF nc|ENSG00000129353|Q8IWA5-3|SLC44A2 nc|ENSG00000129353|Q8IWA5-3|SLC44A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8931274414062 3 405.892619 1214.65603 0.20237 8.214E-05 1.4158 0.00057466 1.6182 0.0006568 405.89300095687196 48.099 0.31438 48.061 47.869 48.184 -0.038647 46 15 4 0 0 0 0.040733 1 25935 25935 49.527 32.961 1 10617000 74560 4132 49835 50909 86797 86797 0.05728515871169293 VYLICEPIL 9 Unmodified _VYLICEPIL_ 0 0 0 ENST00000503780.5_2_4:175204968-175219170:+|nuORF;ENST00000515299.5_2_4:175205204-175219170:+|nuORF;ENST00000457424.6_2_4:175205077-175219170:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF ENST00000503780.5_2_4:175204968-175219170:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.798828125 2 531.798829 1061.5831 1.2204 0.00064902 -3.0012 -0.001596 -1.7808 -0.000947 533.2996331858471 101.13 0.1591 94.952 94.831 94.99 -6.1757 23 8 4 0 0 0 0.28047 1 67799 67799 18.135 3.5533 1 39838000 74561 14477 49836 50910 86798 86798 0.054776260335529514 VYLIHWPQGF 10 Unmodified _VYLIHWPQGF_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10;nc|ENSG00000227471|C9JRZ8|AKR1B15;ENSG00000227471|ENST00000457545|AKR1B15 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.3350830078125 2 630.332216 1258.64988 1.0979 0.00069204 0.81188 0.00051175 1.9098 0.0012038 630.332235470864 98.03 0.26952 91.854 91.716 91.985 -6.1757 42 16 3 0 0 0 2.0758E-15 1 64941 64941 171.47 134.96 1 73893000 74562 10046 49837 50911 86799 86799 0.030899976396312923 VYLIYYEESL 10 Unmodified _VYLIYYEESL_ 0 0 0 ENSG00000181009|ENST00000641181|OR52N5 ENSG00000181009|ENST00000641181|OR52N5 ENSG00000181009|ENST00000641181|OR52N5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.3272705078125 2 646.326462 1290.63837 0.45663 0.00029513 1.1578 0.00074833 1.6145 0.0010435 646.3272124664879 73.648 0.27502 73.692 73.568 73.843 0.043983 29 12 3 0 0 0 0.44373 1 40587 40587 19.257 4.0085 1 3269600 74563 8941 49838 50912 86800 86800 0.004677110350030489 VYLKALLL 8 Unmodified _VYLKALLL_ 0 0 0 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1;ENST00000497873.1_1_21:34107263-34123563:-|nuORF nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 466.8133850097656 2 466.812596 931.61064 1.3558 0.00063292 0.30418 0.000142 1.66 0.00077492 466.81265055327435 97.274 0.19335 91.098 91.01 91.203 -6.1757 17 10 2 0 0 0 0.31612 1 64478 64478 53.576 21.459 1 6404200 74564 6625 49839 50913 86801 86801 0.1420989735609055 VYLKKMPQLF 10 Unmodified _VYLKKMPQLF_ 0 0 0 ENST00000482800.5_1_3:57269609-57269651:+|nuORF ENST00000482800.5_1_3:57269609-57269651:+|nuORF ENST00000482800.5_1_3:57269609-57269651:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8858337402344 3 422.914143 1265.7206 0.41077 0.00017372 2.215 0.00093674 2.6257 0.0011105 422.9150391575781 48.107 0.075798 48.068 48.026 48.102 -0.038647 7 3 3 0 0 0 0.23675 1 25939 25939 7.1017 2.9122 1 706550 74565 14114 49840 50914 86802 86802 0.09836954632942252 VYLKPSYAF 9 Unmodified _VYLKPSYAF_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.599365234375 2 544.294768 1086.57498 -0.056753 -3.089E-05 0.71811 0.00039086 0.66135 0.00035997 544.7960504230239 54.892 0.25797 54.426 54.321 54.579 -0.46664 17 12 2 0 0 0 0.18118 1 29782 29782 18.135 4.6271 1 1037800 74566 275 49841 50915 86803 86803 0.03515815108403331 VYLKPSYAF 9 Unmodified _VYLKPSYAF_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2959594726562 2 544.294768 1086.57498 0.23213 0.00012635 -0.83342 -0.00045363 -0.6013 -0.00032728 544.2948385421535 54.589 0.54162 54.522 54.338 54.88 -0.066936 36 26 2 0 0 0 0.14 1 29656 29656 29.082 4.4077 1 6642500 74567 275 49841 50915 86804 86804 0.03515815108403331 VYLKTALGL 9 Unmodified _VYLKTALGL_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.3060913085938 2 489.305136 976.595718 0.58531 0.0002864 -0.87071 -0.00042604 -0.2854 -0.00013965 489.3043556262506 60.636 0.53175 60.593 60.476 61.008 -0.043507 36 26 2 0 0 0 0.010301 1 33065 33065 79.596 31.25 1 9506600 74568 10423 49842 50916 86805 86805 0.10648405488075241 VYLKTALGL 9 Unmodified _VYLKTALGL_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 489.305136 976.595718 0.57787 0.00028276 0.8341 0.00040813 1.412 0.00069088 489.3055022470467 66.489 0.46228 60.314 60.027 60.489 -6.1757 -0.13967 0.00025219 NaN 79.596 37 25 2 NaN NaN NaN NaN 0 NaN NaN 0 13558000 74569 10423 49842 50916 0.10648405488075241 VYLLEDGLEL 10 Unmodified _VYLLEDGLEL_ 0 0 0 nc|ENSG00000086200|Q9UI26-2|IPO11;ENST00000502862.1_1_5:61811283-61822085:+|nuORF;ENSG00000086200|ENST00000325324|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 nc|ENSG00000086200|Q9UI26-2|IPO11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5452270507812 3 388.544662 1162.61216 0.55365 0.00021512 1.0444 0.0004058 1.5981 0.00062092 388.5449010159652 52.325 0.24087 52.266 52.127 52.368 -0.058918 28 11 3 0 0 0 0.62068 1 28317 28317 8.9762 0 1 4862300 74570 16061 49843 50917 86806 86806 0.0373544186354593 VYLLFKVCK 9 Unmodified _VYLLFKVCK_ 0 0 0 REV__nc|ENSG00000135404|P08962-2|CD63 REV__nc|ENSG00000135404|P08962-2|CD63 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.8309326171875 2 556.830463 1111.64637 0.78476 0.00043698 -0.42411 -0.00023616 0.36066 0.00020082 556.8303096861754 28.438 0.3366 25.289 25.16 25.497 -3.1482 22 17 2 0 0 0 0.41742 1 15885 15885 11.64 1.5664 1 8148000 + 74571 20062 49844 50918 86807 86807 0.09501611541418242 VYLLNSTTL 9 Unmodified _VYLLNSTTL_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2892456054688 2 512.289682 1022.56481 0.40327 0.00020659 -0.030472 -1.5611E-05 0.3728 0.00019098 512.289736188295 71.762 0.3671 71.286 71.073 71.441 -0.47609 37 14 4 0 0 0 0.25297 1 39247 39247 19.439 4.8573 1 2344300 74572 16111 49845 50919 86808 86808 0.05443207383189019 VYLLNSTTL 9 Unmodified _VYLLNSTTL_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.28955078125 2 512.289682 1022.56481 1.313 0.00067266 -0.29469 -0.00015097 1.0184 0.00052169 512.28952309738 79.438 0.47427 73.263 73.026 73.5 -6.1757 41 27 2 0 0 0 0.052168 2 52013 52013;52164 44.407 15.92 1 16985000 74573 16111 49845 50919 86809;86810 86809 0.05443207383189019 VYLLNSTTL 9 Unmodified _VYLLNSTTL_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 512.289682 1022.56481 1.3391 0.00068599 0.59159 0.00030306 1.9306 0.00098905 512.2900290258345 71.243 0.25591 71.282 71.109 71.365 0.039032 -0.0021904 0.00052797 NaN 19.439 20 10 3 NaN NaN NaN NaN 0 NaN NaN 0 842180 74574 16111 49845 50919 0.05443207383189019 VYLLRSYCF 9 Unmodified _VYLLRSYCF_ 0 0 0 ENSG00000159063|ENST00000299626|ALG8;nc|ENSG00000159063|Q9BVK2-2|ALG8 ENSG00000159063|ENST00000299626|ALG8 ENSG00000159063|ENST00000299626|ALG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.3038330078125 2 582.299527 1162.5845 0.32619 0.00018994 4.2339 0.0024654 4.5601 0.0026553 582.3014875088107 97.175 0.29665 96.932 96.748 97.045 -0.24277 15 12 2 0 0 0 0.46501 1 53056 53056 9.3831 0.035688 1 407960 74575 6622 49846 50920 86811 86811 0.009712601222872763 VYLLYHTWS 9 Unmodified _VYLLYHTWS_ 0 0 0 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 ENSG00000167130|ENST00000372546|DOLPP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.538330078125 3 394.537842 1180.5917 NaN NaN NaN NaN NaN NaN NaN 51.763 1 51.33 50.83 51.83 -0.43367 0 0 0 0.43505 1 27928 27928 17.113 0 1 74576 7578 49847 50921 86812 86812 0.008623159943681458 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(79)LKM(79)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3041381835938 2 565.303421 1128.59229 0.38164 0.00021574 0.34405 0.00019449 0.72569 0.00041023 565.3041725592166 55.298 0.30122 55.229 55.057 55.358 -0.068737 52 14 5 0 0 0 0.010611 2 29986 29986;30084 78.728 55.992 1 16446000 74577 12891 49848 50922 86813;86814 86813 1756;1757 0.03313651327562184 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(56)LKM(56)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3031005859375 2 565.303421 1128.59229 0.065884 3.7244E-05 0.42713 0.00024146 0.49302 0.0002787 565.3037873994479 55.71 0.28568 55.641 55.477 55.762 -0.068737 41 14 4 0 0 0 0.028475 1 30269 30269 56.177 56.177 1 18882000 74578 12891 49848 50922 86815 86815 1756;1757 0.03313651327562184 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(110)LKM(110)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3048095703125 2 565.303421 1128.59229 1.2333 0.00069721 1.9626 0.0011095 3.196 0.0018067 565.3048104264436 61.165 0.36765 55.018 54.827 55.195 -6.1478 30 18 2 0 0 0 0.0074135 1 39395 39395 110.67 70.717 1 28011000 74579 12891 49848 50922 86816 86816 1756;1757 0.03313651327562184 VYLMLKMSL 9 2 Oxidation (M) _VYLM(Oxidation (M))LKM(Oxidation (M))SL_ VYLM(1)LKM(1)SL VYLM(120)LKM(120)SL 0 0 2 ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF ENST00000402538.7_1_2:33740127-33740184:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3049926757812 2 565.303421 1128.59229 1.3106 0.00074089 1.1896 0.00067246 2.5002 0.0014133 565.3037576504828 61.665 0.42662 55.489 55.248 55.674 -6.1757 32 21 2 0 0 0 0.0038489 1 39686 39686 122.18 80.34 1 33932000 74580 12891 49848 50922 86817 86817 1756;1757 0.03313651327562184 VYLPCLQNI 9 Carbamidomethyl (C) _VYLPC(Carbamidomethyl (C))LQNI_ VYLPC(1)LQNI VYLPC(40)LQNI 0 1 0 ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000113504|Q9Y666-2|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;ENST00000372315.4_1_20:44657854-44669254:+|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2982788085938 2 560.296985 1118.57942 1.0341 0.00057943 -0.095532 -5.3526E-05 0.93861 0.0005259 560.2970574911437 80.785 0.36267 80.293 80.102 80.465 -0.49247 35 15 3 0 0 0 0.068777 1 44203 44203 40.449 19.995 1 3392500 74581 5210;2971;3744;15492 49849 50923 86818 86818 305;373 0.024869562596677497 VYLPCLQNI 9 Carbamidomethyl (C) _VYLPC(Carbamidomethyl (C))LQNI_ VYLPC(1)LQNI VYLPC(74)LQNI 0 1 0 ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000113504|Q9Y666-2|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;ENST00000372315.4_1_20:44657854-44669254:+|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2974853515625 2 560.296985 1118.57942 0.43655 0.0002446 -1.0847 -0.00060773 -0.6481 -0.00036313 560.296836276662 80.183 0.16326 80.241 80.185 80.348 0.057587 13 9 2 0 0 0 0.012158 1 44329 44329 74.396 40.294 1 17476000 74582 5210;2971;3744;15492 49849 50923 86819 86819 305;373 0.024869562596677497 VYLPCLQNI 9 Carbamidomethyl (C) _VYLPC(Carbamidomethyl (C))LQNI_ VYLPC(1)LQNI VYLPC(100)LQNI 0 1 0 ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000113504|Q9Y666-2|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;ENST00000372315.4_1_20:44657854-44669254:+|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF ENSG00000113504|ENST00000264930|SLC12A7;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2974243164062 2 560.296985 1118.57942 1.2723 0.00071289 -0.1624 -9.0993E-05 1.1099 0.0006219 560.2969167329862 87.59 0.63712 81.414 81.092 81.729 -6.1757 106 34 4 0 0 0 0.0086629 3 57644 57644;57767;57891 101.72 55.701 1 107420000 74583 5210;2971;3744;15492 49849 50923 86820;86821;86822 86820 305;373 0.024869562596677497 VYLPCLQNIF 10 Carbamidomethyl (C) _VYLPC(Carbamidomethyl (C))LQNIF_ VYLPC(1)LQNIF VYLPC(44)LQNIF 0 1 0 nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4;ENST00000573023.6_1_16:67984709-67996179:-|nuORF;nc|ENSG00000124067|Q9UP95-4|SLC12A4;ENST00000576462.1_1_16:67991639-68002357:-|nuORF;ENST00000372315.4_1_20:44657854-44669254:+|nuORF;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000140199|Q9UHW9-6|SLC12A6;ENST00000572010.5_1_16:67986261-67997363:-|nuORF nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.8319091796875 2 633.831191 1265.64783 0.67026 0.00042483 0.34866 0.00022099 1.0189 0.00064583 633.8313646506815 100.7 0.098 94.526 94.472 94.57 -6.1757 11 6 2 0 0 0 0.1131 1 67424 67424 44.407 14.182 1 40418000 74584 5210;3744;15492 49850 50924 86823 86823 373 0.025632008395177763 VYLPDVWTI 9 Unmodified _VYLPDVWTI_ 0 0 0 ENSG00000158941|ENST00000308511|CCAR2;nc|ENSG00000158941|Q8N163-2|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 ENSG00000158941|ENST00000308511|CCAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3322143554688 2 553.30005 1104.58555 1.6849 0.00093225 -1.0438 -0.00057756 0.64105 0.00035469 553.2995331949753 100.87 0.19205 94.699 94.556 94.748 -6.1757 25 11 3 0 0 0 0.2001 1 67548 67548 23.148 9.2424 1 70967000 74585 6618 49851 50925 86824 86824 0.037437977628542285 VYLPGHFFHL 10 Unmodified _VYLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.55419921875 3 410.553715 1228.63931 0.50294 0.00020649 0.40294 0.00016543 0.90589 0.00037192 410.5538172347601 70.415 0.38704 70.451 70.271 70.658 0.035515 58 17 4 0 0 0 0.20962 2 38822 38717;38822 32.786 18.38 1 15457000 74586 9449 49852 50926 86825;86826 86826 0.034140149852191826 VYLPGHFFHL 10 Unmodified _VYLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8884887695312 3 410.553715 1228.63931 1.2039 0.00049427 0.0048662 1.9978E-06 1.2088 0.00049627 410.55363847633083 94.723 0.28461 88.547 88.409 88.693 -6.1757 52 16 4 0 0 0 0.20962 1 62699 62699 32.786 19.171 1 81249000 74587 9449 49852 50926 86827 86827 0.034140149852191826 VYLPGHFFHL 10 Unmodified _VYLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.3275146484375 2 615.326934 1228.63931 0.92635 0.00057001 0.37142 0.00022855 1.2978 0.00079856 615.3266945510738 94.728 0.19727 88.553 88.445 88.642 -6.1757 18 11 2 0 0 0 0.0575 1 62740 62740 82.939 39.081 1 19524000 74588 9449 49852 50926 86828 86828 0.034140149852191826 VYLPGHFFHLL 11 Unmodified _VYLPGHFFHLL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2483520507812 3 448.248403 1341.72338 1.305 0.00058498 -0.44773 -0.00020069 0.8573 0.00038428 448.24824538848424 81.045 0.34501 81.104 80.892 81.237 0.059929 34 13 3 0 0 0 0.29175 2 44771 44771;44877 27.223 24.151 1 5735100 74589 9449 49853 50927 86829;86830 86829 0.06618546082131616 VYLPGHFFHLL 11 Unmodified _VYLPGHFFHLL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.249755859375 3 448.248403 1341.72338 1.2022 0.00053889 0.058663 2.6295E-05 1.2609 0.00056519 448.58273481177935 99.411 0.10485 93.235 93.201 93.306 -6.1757 14 6 3 0 0 0 0.11933 1 66202 66202 40.239 24.701 1 27295000 74590 9449 49853 50927 86831 86831 0.06618546082131616 VYLPGSRQTL 10 Unmodified _VYLPGSRQTL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.8213500976562 2 567.319306 1132.62406 0.42573 0.00024152 0.27133 0.00015393 0.69706 0.00039545 567.3194193741006 43.863 0.12636 43.847 43.758 43.884 -0.015667 8 5 2 0 0 0 0.15393 1 23528 23528 41.956 16.556 1 24298000 74591 16412 49854 50928 86832 86832 0.06305103397380662 VYLPGSRQTL 10 Unmodified _VYLPGSRQTL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3198852539062 2 567.319306 1132.62406 1.3621 0.00077274 -0.40844 -0.00023172 0.95364 0.00054102 567.3191975937274 49.55 0.40534 44.13 43.95 44.356 -5.4193 55 25 3 0 0 0 0.025861 2 30877 30877;31006 70.332 14.155 1 97064000 74592 16412 49854 50928 86833;86834 86833 0.06305103397380662 VYLPLTSHI 9 Unmodified _VYLPLTSHI_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.8008422851562 2 521.800217 1041.58588 -0.011495 -5.9979E-06 0.92056 0.00048035 0.90907 0.00047435 521.8005673544247 65.679 0.38095 65.195 64.979 65.36 -0.48428 70 16 5 0 0 0 0.0086179 2 35890 35786;35890 101.72 63.571 1 28119000 74593 2410 49855 50929 86835;86836 86836 0.0667521748271156 VYLPLTSHI 9 Unmodified _VYLPLTSHI_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8002319335938 2 521.800217 1041.58588 0.54051 0.00028204 -0.010516 -5.4874E-06 0.53 0.00027655 521.800139213288 65.198 0.47435 65.198 64.956 65.431 1.5259E-05 94 22 7 0 0 0 0.0086629 2 35751 35643;35751 101.72 63.571 1 86551000 74594 2410 49855 50929 86837;86838 86838 0.0667521748271156 VYLPLTSHI 9 Unmodified _VYLPLTSHI_ 0 0 0 ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF ENSG00000106266|ENST00000222990|SNX8 ENSG00000106266|ENST00000222990|SNX8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8013305664062 2 521.800217 1041.58588 1.1509 0.00060052 0.082489 4.3043E-05 1.2334 0.00064357 521.800097537662 71.987 1.1477 65.811 65.111 66.259 -6.1757 92 60 2 0 0 0 0.0083087 1 46719 46719 97.075 61.03 1 102040000 74595 2410 49855 50929 86839 86839 0.0667521748271156 VYLPNINKI 9 Unmodified _VYLPNINKI_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.3217163085938 2 537.321317 1072.62808 -0.40397 -0.00021706 0.12544 6.7403E-05 -0.27852 -0.00014966 537.3212096677023 61.03 0.23981 60.54 60.475 60.715 -0.48932 17 11 2 0 0 0 0.070838 1 33249 33249 39.957 12.329 1 3295100 74596 1083 49856 50930 86840 86840 0.09467192891088416 VYLPNINKI 9 Unmodified _VYLPNINKI_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.32177734375 2 537.321317 1072.62808 0.32536 0.00017483 -0.16239 -8.7257E-05 0.16297 8.7569E-05 537.3213498627165 60.69 0.28982 60.646 60.515 60.805 -0.043507 42 14 4 0 0 0 0.0090851 1 33072 33072 85.357 50.955 1 29062000 74597 1083 49856 50930 86841 86841 0.09467192891088416 VYLPNINKI 9 Unmodified _VYLPNINKI_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3203735351562 2 537.321317 1072.62808 0.535 0.00028746 -0.0055931 -3.0053E-06 0.5294 0.00028446 537.3211014765553 66.972 0.38232 60.796 60.58 60.962 -6.1757 36 21 2 0 0 0 0.0077963 1 43560 43560 109.63 45.393 1 15473000 74598 1083 49856 50930 86842 86842 0.09467192891088416 VYLPNINKI 9 Unmodified _VYLPNINKI_ 0 0 0 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 ENSG00000072422|ENST00000337910|RHOBTB1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 537.321317 1072.62808 0.48341 0.00025974 0.18327 9.8473E-05 0.66667 0.00035822 537.3214336902373 66.479 0.57227 60.303 60.027 60.599 -6.1757 -0.19347 0.00016605 NaN 85.357 55 31 2 NaN NaN NaN NaN 0 NaN NaN 0 18932000 74599 1083 49856 50930 0.09467192891088416 VYLPPEAFTF 10 Unmodified _VYLPPEAFTF_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.9852905273438 2 592.305332 1182.59611 0.43451 0.00025736 0.30896 0.000183 0.74347 0.00044036 592.3055239471746 93.95 0.55103 93.53 93.106 93.657 -0.42044 43 24 2 0 0 0 0.50944 3 51256 51222;51256;51367 15.847 7.937 1 332330 74600 4267 49857 50931 86843;86844;86845 86844 0.012117804172703472 VYLPPEAFTF 10 Unmodified _VYLPPEAFTF_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.8306274414062 2 592.305332 1182.59611 1.7062 0.0010106 -0.55287 -0.00032747 1.1534 0.00068314 592.305834900066 93.453 0.66219 93.476 93.132 93.794 0.022987 40 25 2 0 0 0 0.21952 1 51878 51878 15.847 0 1 2086600 74601 4267 49857 50931 86846 86846 0.012117804172703472 VYLPRVLDI 9 Unmodified _VYLPRVLDI_ 0 0 0 ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR ENSG00000198793|ENST00000361445|MTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3302001953125 2 544.329142 1086.64373 0.6989 0.00038043 0.73974 0.00040266 1.4386 0.00078309 544.329583584053 80.19 0.35358 79.701 79.454 79.807 -0.48932 18 13 2 0 0 0 0.20428 1 43906 43906 22.736 0 1 788790 74602 10153 49858 50932 86847 86847 0.10387479408132094 VYLPTAFLL 9 Unmodified _VYLPTAFLL_ 0 0 0 ENSG00000177054|ENST00000446113|ZDHHC13;nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF ENSG00000177054|ENST00000446113|ZDHHC13 ENSG00000177054|ENST00000446113|ZDHHC13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8080444335938 2 518.807511 1035.60047 0.74738 0.00038775 -0.36019 -0.00018687 0.38719 0.00020088 518.8069792998327 101.71 0.13051 95.535 95.461 95.592 -6.1757 18 7 3 0 0 0 0.10925 1 68269 68269 32.117 7.4431 1 198370000 74603 8652 49859 50933 86848 86848 0.08409289630844796 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.7820434570312 2 515.782025 1029.5495 0.54758 0.00028243 -0.26254 -0.00013541 0.28504 0.00014702 515.7819183283843 47.938 0.32659 47.938 47.745 48.071 0 32 15 3 0 0 0 0.03327 1 26234 26234 53.576 35.429 1 6284000 74604 372 49860 50934 86849 86849 0.035903405860153725 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7824096679688 2 515.782025 1029.5495 0.4389 0.00022638 -0.16225 -8.3686E-05 0.27665 0.00014269 515.7818691138688 48.173 0.33143 47.821 47.652 47.984 -0.35261 54 16 4 0 0 0 0.013472 2 25791 25791;25891 70.716 40.491 1 102470000 74605 372 49860 50934 86850;86851 86850 0.035903405860153725 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.7822875976562 2 515.782025 1029.5495 0.61596 0.0003177 0.22523 0.00011617 0.84119 0.00043387 515.7820928652184 47.879 0.26517 47.841 47.68 47.946 -0.038647 30 12 3 0 0 0 0.013472 1 25769 25769 70.716 40.491 1 9311200 74606 372 49860 50934 86852 86852 0.035903405860153725 VYLPTHTSL 9 Unmodified _VYLPTHTSL_ 0 0 0 ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP ENSG00000007944|ENST00000356840|MYLIP MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.7824096679688 2 515.782025 1029.5495 1.197 0.00061741 0.49574 0.00025569 1.6928 0.0008731 515.7821078880025 53.847 0.51942 48.043 47.772 48.291 -5.8042 108 31 5 0 0 0 0.0086179 3 34072 33947;34072;34208 89.427 51.276 1 430420000 74607 372 49860 50934 86853;86854;86855 86854 0.035903405860153725 VYLQNWSHVL 10 Unmodified _VYLQNWSHVL_ 0 0 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.832275390625 2 629.83258 1257.65061 -0.076217 -4.8004E-05 0.32037 0.00020178 0.24415 0.00015378 629.8327097643277 85.156 0.82189 78.981 78.657 79.479 -6.1757 130 50 3 0 0 0 1.8216E-05 4 56014 55884;56014;56142;56277 126.57 71.792 1 69355000 74608 7907 49861 50935 86856;86857;86858;86859 86857 0.03208792288683071 VYLQQFEEL 9 Unmodified _VYLQQFEEL_ 0 0 0 REV__ENSG00000163032|ENST00000295156|VSNL1 REV__ENSG00000163032|ENST00000295156|VSNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.799072265625 2 584.797872 1167.58119 0.40603 0.00023745 1.1265 0.00065877 1.5325 0.00089622 584.7984736477549 38.859 0.76134 38.859 38.62 39.381 0 83 35 4 0 0 0 0.34999 1 20763 20763 14.838 14.838 1 13232000 + 74609 21718 49862 50936 86860 86860 0.004102885493011854 VYLQREVF 8 Unmodified _VYLQREVF_ 0 0 0 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2881469726562 2 527.290017 1052.56548 1.7667 0.00093158 -2.8086 -0.0014809 -1.0418 -0.00054934 527.2884046129387 62.975 0.41493 56.799 56.442 56.857 -6.1757 34 20 2 0 0 0 0.40035 1 40610 40610 44.407 4.4573 1 10475000 74610 2056 49863 50937 86861 86861 0.04130046822888289 VYLRFLNL 8 Unmodified _VYLRFLNL_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.3103637695312 2 519.310752 1036.60695 0.43937 0.00022817 -0.51954 -0.0002698 -0.080171 -4.1633E-05 519.3104781216939 40.519 0.29517 40.524 40.337 40.633 0.0050583 25 13 3 0 0 0 0.67481 1 21592 21592 19.439 0 1 1717000 74611 7916 49864 50938 86862 86862 0.09011227582209358 VYLRVLQTF 9 Unmodified _VYLRVLQTF_ 0 0 0 ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C;nc|ENSG00000009335|Q15386-3|UBE3C ENSG00000009335|ENST00000348165|UBE3C ENSG00000009335|ENST00000348165|UBE3C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8348388671875 2 569.834591 1137.65463 0.41086 0.00023413 0.094325 5.375E-05 0.50519 0.00028787 569.8346175176074 72.063 0.23595 72.102 71.994 72.23 0.039024 15 11 2 0 0 0 0.026499 1 39695 39695 71.922 41.286 1 3693300 74612 402 49865 50939 86863 86863 0.09130881782402867 VYLSNVVLF 9 Unmodified _VYLSNVVLF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3038330078125 2 527.302593 1052.59063 1.9106 0.0010074 0.10792 5.6907E-05 2.0185 0.0010644 527.3025072150132 94.067 0.49944 94.081 93.883 94.382 0.014252 42 18 3 0 0 0 0.022193 2 52336 52232;52336 61.357 25.23 1 4903100 74613 5210 49866 50940 86864;86865 86865 0.06644101625443 VYLSNVVLF 9 Unmodified _VYLSNVVLF_ 0 0 0 nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 nc|ENSG00000140199|Q9UHW9-6|SLC12A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.3023681640625 2 527.302593 1052.59063 1.2502 0.00065924 -1.7193 -0.0009066 -0.46911 -0.00024736 527.3012131619989 100.24 0.14406 94.06 93.978 94.122 -6.1757 25 8 4 0 0 0 0.03327 1 66961 66961 53.576 20.79 1 50485000 74614 5210 49866 50940 86866 86866 0.06644101625443 VYLSRPILL 9 Unmodified _VYLSRPILL_ 0 0 0 ENST00000369183.8_1_10:120095895-120101330:-|nuORF ENST00000369183.8_1_10:120095895-120101330:-|nuORF ENST00000369183.8_1_10:120095895-120101330:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.796875 2 537.33951 1072.66447 0.57144 0.00030706 -0.52809 -0.00028376 0.043351 2.3294E-05 537.3387081438821 69.027 0.28083 69.058 68.886 69.166 0.030914 27 13 3 0 0 0 0.18118 1 37894 37894 13.906 3.0821 1 2939400 74615 12300 49867 50941 86867 86867 0.13104069787800654 VYLTDPQGL 9 Unmodified _VYLTDPQGL_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.2664184570312 2 503.266207 1004.51786 0.7955 0.00040035 0.07916 3.9839E-05 0.87466 0.00044019 503.2661513091739 57.107 0.33374 57.107 56.947 57.281 0 32 14 3 0 0 0 0.068777 1 31788 31788 40.449 15.775 1 3968900 74616 6513 49868 50942 86868 86868 0.01578347832048621 VYLTDPQGL 9 Unmodified _VYLTDPQGL_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.26708984375 2 503.266207 1004.51786 NaN NaN NaN NaN NaN NaN NaN 57.719 1 57.23 56.73 57.73 -0.48974 0 0 0 0.18911 1 31371 31371 32.117 7.4431 1 74617 6513 49868 50942 86869 86869 0.01578347832048621 VYLTDPQGLVL 11 Unmodified _VYLTDPQGLVL_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3422241210938 2 609.342446 1216.67034 0.54211 0.00033033 0.54283 0.00033077 1.0849 0.0006611 609.342790668236 84.231 0.31539 83.731 83.572 83.887 -0.49961 34 13 3 0 0 0 0.50515 2 46054 46054;46152 16.149 6.766 1 1544900 74618 6513 49869 50943 86870;86871 86870 0.07067123508795703 VYLTDPQGLVL 11 Unmodified _VYLTDPQGLVL_ 0 0 0 ENSG00000157353|ENST00000288078|FCSK;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENST00000464499.5_1_16:70501260-70504246:+|nuORF ENSG00000157353|ENST00000288078|FCSK ENSG00000157353|ENST00000288078|FCSK MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.3434448242188 2 609.342446 1216.67034 0.70777 0.00043127 0.53716 0.00032732 1.2449 0.00075859 609.8441236871217 92.399 0.49576 86.223 86.005 86.5 -6.1757 47 29 2 0 0 0 0.01364 3 61065 61065;61193;61260 63.961 29.559 1 14365000 74619 6513 49869 50943 86872;86873;86874 86872 0.07067123508795703 VYLTHLDYV 9 Unmodified _VYLTHLDYV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3141479492188 2 561.795132 1121.57571 0.56348 0.00031656 -2.6081 -0.0014652 -2.0446 -0.0011487 561.7931341077189 57.888 0.25379 57.888 57.736 57.99 0 21 10 3 0 0 0 0.19613 1 32221 32221 12.532 0 1 1141000 74620 1354;13208 49870 50944 86875 86875 0.01978609757452432 VYLTHLDYV 9 Unmodified _VYLTHLDYV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.7942504882812 2 561.795132 1121.57571 0.43969 0.00024702 -0.59207 -0.00033262 -0.15238 -8.5604E-05 561.7949127098017 58.346 0.26959 57.856 57.759 58.028 -0.49079 32 12 3 0 0 0 0.044296 1 31726 31726 61.357 16.95 1 15311000 74621 1354;13208 49870 50944 86876 86876 0.01978609757452432 VYLTHLDYV 9 Unmodified _VYLTHLDYV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7957153320312 2 561.795132 1121.57571 1.6402 0.00092145 0.29232 0.00016422 1.9325 0.0010857 561.7946174433412 64.263 0.50578 58.088 57.841 58.347 -6.1757 88 26 5 0 0 0 0.069655 1 41591 41591 52.268 16.224 1 53743000 74622 1354;13208 49870 50944 86877 86877 0.01978609757452432 VYLTHLDYV 9 Unmodified _VYLTHLDYV_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61705957-61719950:-|nuORF ENSG00000082898|ENST00000401558|XPO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 561.795132 1121.57571 1.2524 0.00070362 -0.76635 -0.00043053 0.48609 0.00027308 561.794727600569 58.026 0.19875 57.96 57.834 58.033 -0.066036 0.012593 -0.00039401 NaN 61.357 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3713100 74623 1354;13208 49870 50944 0.01978609757452432 VYLVWEEDG 9 Unmodified _VYLVWEEDG_ 0 0 0 ENST00000425203.1_1_22:31644623-31654315:+|nuORF ENST00000425203.1_1_22:31644623-31654315:+|nuORF ENST00000425203.1_1_22:31644623-31654315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.259765625 2 555.261122 1108.50769 0.090986 5.0521E-05 -0.69895 -0.0003881 -0.60797 -0.00033758 555.260402766147 60.66 0.18004 60.171 60.069 60.249 -0.48932 14 8 2 0 0 0 0.12841 1 33045 33045 30.225 0 1 2811200 74624 13160 49871 50945 86878 86878 -0.04222259893185765 VYLYIIKK 8 Unmodified _VYLYIIKK_ 0 0 0 ENSG00000213462|ENST00000394323|ERV3-1 ENSG00000213462|ENST00000394323|ERV3-1 ENSG00000213462|ENST00000394323|ERV3-1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3317260742188 2 520.331153 1038.64775 NaN NaN NaN NaN NaN NaN NaN 72.88 1 72.922 72.422 73.422 0.041725 0 0 0 0.97444 1 40142 40142 0.79363 0.19213 1 74625 10436 49872 50946 86879 86879 0.12997568901846535 VYMCHVGWL 9 Unmodified _VYMCHVGWL_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|113|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|113|1|anti-sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|113|1|anti-sense MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.3068237304688 2 554.259348 1106.50414 1.331 0.00073773 -3.33 -0.0018457 -1.999 -0.001108 554.759874270847 59.115 0.12764 53.04 52.953 53.081 -6.0745 9 6 2 0 0 0 0.17158 1 37939 37939 20.871 6.2895 1 14955000 74626 15968 49873 50947 86880 86880 -0.04484924472399143 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(70)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.7836303710938 2 648.783907 1295.55326 0.29762 0.00019309 -0.94641 -0.00061401 -0.64879 -0.00042092 648.7831510639116 59.96 0.29788 59.96 59.796 60.094 0 37 13 4 0 0 0 0.013609 1 33407 33407 70.332 52.197 1 7283400 74627 5575 49874 50948 86881 86881 1027 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(70)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.2846069335938 2 648.783907 1295.55326 -0.17433 -0.0001131 -0.32702 -0.00021216 -0.50134 -0.00032526 648.7837004620492 60.567 0.36243 60.078 59.907 60.269 -0.48932 73 17 5 0 0 0 0.013609 2 32922 32922;33019 70.332 58.692 1 120570000 74628 5575 49874 50948 86882;86883 86882 1027 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(96)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.7835083007812 2 648.783907 1295.55326 0.53814 0.00034913 -0.97268 -0.00063106 -0.43454 -0.00028192 648.7832812758646 60.242 0.40307 60.189 59.938 60.341 -0.053062 70 21 4 0 0 0 0.0082548 2 32765 32765;32867 96.367 80.519 1 82136000 74629 5575 49874 50948 86884;86885 86884 1027 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(130)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.7841796875 2 648.783907 1295.55326 0.64429 0.00041801 -0.88063 -0.00057134 -0.23633 -0.00015333 648.7835128882442 65.959 0.78577 59.783 59.494 60.28 -6.1757 191 45 5 0 0 0 0.0032147 4 43107 42706;42837;42971;43107 125.53 105.08 1 248790000 74630 5575 49874 50948 86886;86887;86888;86889 86889 1027 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(130)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.7845458984375 2 648.783907 1295.55326 0.45024 0.00029211 -0.34434 -0.0002234 0.10591 6.871E-05 648.7837709894192 66.73 0.77277 60.554 60.28 61.052 -6.1757 131 43 4 0 0 0 0.0024112 4 43237 43237;43369;43509;43657 129.77 113.93 1 71154000 74631 5575 49874 50948 86890;86891;86892;86893 86890 1027 -0.08269357702488378 VYMDWYEKF 9 Oxidation (M) _VYM(Oxidation (M))DWYEKF_ VYM(1)DWYEKF VYM(89)DWYEKF 0 0 1 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.7845458984375 2 648.783907 1295.55326 0.62269 0.00040399 -0.13535 -8.7816E-05 0.48733 0.00031617 648.7838311604569 67.449 0.53009 61.273 61.071 61.601 -6.1757 52 29 2 0 0 0 0.0086209 2 43912 43912;44047 106.94 93.034 1 23770000 74632 5575 49874 50948 86894;86895 86894 1027 -0.08269357702488378 VYMDWYEKF 9 Unmodified _VYMDWYEKF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.78662109375 2 640.78645 1279.55835 0.31603 0.00020251 0.80086 0.00051318 1.1169 0.00071569 640.7870765368185 71.808 0.37814 71.332 71.121 71.499 -0.47609 47 14 4 0 0 0 0.062454 2 39250 39250;39354 41.956 31.132 1 8585500 74633 5575 49874 50949 86896;86897 86896 -0.0702505383985681 VYMDWYEKF 9 Unmodified _VYMDWYEKF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.788818359375 2 640.78645 1279.55835 1.1294 0.00072373 1.6702 0.0010702 2.7996 0.001794 640.787782894744 71.262 0.33839 71.301 71.109 71.447 0.039024 51 14 5 0 0 0 0.0094097 2 39182 39182;39287 82.529 60.783 1 16018000 74634 5575 49874 50949 86898;86899 86898 -0.0702505383985681 VYMDWYEKF 9 Unmodified _VYMDWYEKF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.787109375 2 640.78645 1279.55835 0.36775 0.00023565 -0.33089 -0.00021203 0.036863 2.3621E-05 640.7864569238362 82.568 1.5315 76.392 75.514 77.045 -6.1757 318 85 5 0 0 0 0.0082475 8 54597 53699;53830;53958;54077;54203;54331;54461;54597 96.367 77.11 1 248400000 74635 5575 49874 50949 86900;86901;86902;86903;86904;86905;86906;86907 86907 -0.0702505383985681 VYMGLLAVF 9 Unmodified _VYMGLLAVF_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000533687.1_1_11:118969111-118971155:-|nuORF;ENST00000414373.5_1_11:118967985-118971732:-|nuORF nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7799072265625 2 506.780439 1011.54633 0.61396 0.00031114 -1.0375 -0.00052576 -0.42349 -0.00021462 506.77985423576047 101.88 0.11308 95.709 95.644 95.757 -6.1757 8 5 2 0 0 0 0.1492 1 68392 68392 28.173 3.4993 1 23356000 74636 8197 49875 50950 86908 86908 0.04101374207641584 VYMHYLMVF 9 Unmodified _VYMHYLMVF_ 0 0 0 REV__ENSG00000257008|ENST00000582579|GPR142 REV__ENSG00000257008|ENST00000582579|GPR142 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.291015625 2 601.790481 1201.56641 -0.068191 -4.1037E-05 0.29517 0.00017763 0.22698 0.0001366 601.7906261299303 91.917 0.17067 91.917 91.798 91.969 0 21 10 3 0 0 0 0.53666 1 50797 50797 5.2307 0 1 346040 + 74637 24559 49876 50951 86909 86909 -0.02631198124072398 VYMILEDF 8 Unmodified _VYMILEDF_ 0 0 0 ENSG00000081148|ENST00000193391|IMPG2 ENSG00000081148|ENST00000193391|IMPG2 ENSG00000081148|ENST00000193391|IMPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2532958984375 2 515.251711 1028.48887 0.7722 0.00039788 0.46166 0.00023787 1.2339 0.00063575 515.2518117929397 34.651 0.55807 30.556 30.177 30.735 -4.0951 77 32 3 0 0 0 0.50586 1 20080 20080 34.187 5.7005 1 28182000 74638 1318 49877 50952 86910 86910 -0.024235127885958718 VYMIRVYLL 9 Oxidation (M) _VYM(Oxidation (M))IRVYLL_ VYM(1)IRVYLL VYM(71)IRVYLL 0 0 1 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3394165039062 2 593.338652 1184.66275 0.18752 0.00011127 -0.10212 -6.0589E-05 0.085409 5.0677E-05 593.3387978399929 79.215 0.58081 79.27 78.888 79.468 0.05497 72 22 4 0 0 0 0.013323 3 43620 43620;43723;43829 71.134 44.25 1 24659000 74639 6551 49878 50953 86911;86912;86913 86911 1145 0.07780692707524395 VYMIRVYLL 9 Unmodified _VYMIRVYLL_ 0 0 0 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 ENSG00000157916|ENST00000605895|RER1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.342041015625 2 585.341195 1168.66784 0.53638 0.00031397 -0.38542 -0.0002256 0.15096 8.8363E-05 585.341487366476 99.109 0.13134 92.934 92.859 92.99 -6.1757 18 7 3 0 0 0 0.047196 1 65942 65942 46.021 25.567 1 88538000 74640 6551 49878 50954 86914 86914 0.09024996570155963 VYMKVDGEVL 10 Oxidation (M) _VYM(Oxidation (M))KVDGEVL_ VYM(1)KVDGEVL VYM(56)KVDGEVL 0 0 1 ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 ENSG00000125991|ENST00000348547|ERGIC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.797607421875 2 584.799557 1167.58456 0.55096 0.0003222 -2.0635 -0.0012067 -1.5125 -0.00088451 584.7985789963251 44.41 0.43122 39.558 39.328 39.759 -4.852 51 31 3 0 0 0 0.060508 2 27033 27033;27188 55.503 24.866 1 27728000 74641 3919 49879 50955 86915;86916 86915 701 0.0074721533162573905 VYMNRVKEI 9 Unmodified _VYMNRVKEI_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5462036132812 3 384.546231 1150.61686 NaN NaN NaN NaN NaN NaN NaN 29.344 1 29.282 28.782 29.782 -0.062159 0 0 0 0.82739 1 15175 15175 4.897 1.31 1 74642 9929 49880 50956 86917 86917 0.04758047525319853 VYMNRVKEI 9 Unmodified _VYMNRVKEI_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.5468139648438 3 384.546231 1150.61686 0.98659 0.00037939 -1.143 -0.00043952 -0.15637 -6.0131E-05 384.5462394287019 32.815 0.65652 28.959 28.516 29.172 -3.8562 147 36 6 0 0 0 0.07087 2 18659 18659;18796 30.703 8.0454 1 217890000 74643 9929 49880 50956 86918;86919 86918 0.04758047525319853 VYMNRVKEI 9 Unmodified _VYMNRVKEI_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MSMS AL20221201_MKP_PDAC_01 4 576.3159790039062 2 576.315709 1150.61686 NaN NaN NaN NaN NaN NaN NaN 32.739 1 28.883 28.383 29.383 -3.8562 0 0 0 0.011986 1 18698 18698 89.401 31.679 1 74644 9929 49880 50956 86920 86920 0.04758047525319853 VYMNRVKEI 9 Oxidation (M) _VYM(Oxidation (M))NRVKEI_ VYM(1)NRVKEI VYM(51)NRVKEI 0 0 1 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.878173828125 3 389.877869 1166.61178 0.57118 0.00022269 0.171 6.6669E-05 0.74218 0.00028936 389.8778845212406 24.262 0.53135 21.435 21.142 21.673 -2.8273 95 29 4 0 0 0 0.037118 1 13109 13109 51.488 28.713 1 80071000 74645 9929 49880 50957 86921 86921 1601 0.035137436626882845 VYMNRVKEI 9 Oxidation (M) _VYM(Oxidation (M))NRVKEI_ VYM(1)NRVKEI VYM(59)NRVKEI 0 0 1 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.3134155273438 2 584.313166 1166.61178 0.20614 0.00012045 -0.42473 -0.00024818 -0.2186 -0.00012773 584.3128789835456 24.257 0.34846 21.43 21.248 21.597 -2.8273 42 19 3 0 0 0 0.024189 1 13146 13146 59.368 24.436 1 9107200 74646 9929 49880 50957 86922 86922 1601 0.035137436626882845 VYMNRVKEI 9 Oxidation (M) _VYM(Oxidation (M))NRVKEI_ 0 0 1 ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 389.877869 1166.61178 0.045645 1.7796E-05 -4.2583 -0.0016602 -4.2127 -0.0016424 389.8760472389012 21.427 0.11296 21.44 21.402 21.515 0.013798 -0.017211 -0.0047899 NaN 51.488 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2625200 74647 9929 49880 50957 1601 0.035137436626882845 VYMPASSYQSL 11 Oxidation (M) _VYM(Oxidation (M))PASSYQSL_ VYM(1)PASSYQSL VYM(63)PASSYQSL 0 0 1 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.292724609375 2 631.292096 1260.56964 0.83638 0.000528 -0.53039 -0.00033483 0.30598 0.00019317 631.2932851607721 46.232 0.28293 46.232 46.068 46.351 0 30 13 3 0 0 0 0.014934 1 25249 25249 62.573 45.46 1 3763000 74648 6405 49881 50958 86923 86923 1126 -0.050222765363514554 VYMPASSYQSL 11 Oxidation (M) _VYM(Oxidation (M))PASSYQSL_ VYM(1)PASSYQSL VYM(56)PASSYQSL 0 0 1 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.2982177734375 2 631.292096 1260.56964 0.47061 0.00029709 3.6137 0.0022813 4.0843 0.0025784 631.295943578002 46.552 0.26583 46.552 46.412 46.678 0 26 11 3 0 0 0 0.025642 1 25432 25432 56.177 40.028 1 3113600 74649 6405 49881 50958 86924 86924 1126 -0.050222765363514554 VYMPASSYQSL 11 Oxidation (M) _VYM(Oxidation (M))PASSYQSL_ VYM(1)PASSYQSL VYM(63)PASSYQSL 0 0 1 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.7944946289062 2 631.292096 1260.56964 0.30863 0.00019484 0.43819 0.00027663 0.74682 0.00047146 631.2921984229417 46.595 0.27425 46.258 46.149 46.424 -0.33664 26 13 3 0 0 0 0.014934 1 24945 24945 62.573 45.46 1 3714800 74650 6405 49881 50958 86925 86925 1126 -0.050222765363514554 VYMPASSYQSL 11 Oxidation (M) _VYM(Oxidation (M))PASSYQSL_ 0 0 1 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 631.292096 1260.56964 0.36366 0.00022958 0.74686 0.00047149 1.1105 0.00070106 631.2941942224961 46.955 0.27547 46.618 46.462 46.737 -0.33664 0.03305 -0.0014869 NaN 56.177 26 13 3 NaN NaN NaN NaN 0 NaN NaN 0 6370500 74651 6405 49881 50958 1126 -0.050222765363514554 VYMPASSYQSL 11 Unmodified _VYMPASSYQSL_ 0 0 0 nc|ENSG00000155744|Q8IXS8|HYCC2;ENSG00000155744|ENST00000681958|HYCC2;ENST00000286181.7_1_2:201845995-201881890:-|nuORF;ENST00000498780.5_1_2:201862166-201888732:-|nuORF nc|ENSG00000155744|Q8IXS8|HYCC2 nc|ENSG00000155744|Q8IXS8|HYCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.2959594726562 2 623.294639 1244.57472 0.93256 0.00058126 -0.50669 -0.00031582 0.42587 0.00026544 623.294522240417 64.715 0.45647 58.539 58.331 58.787 -6.1757 73 25 4 0 0 0 0.0047291 2 41851 41851;41985 75.761 53.025 1 54644000 74652 6405 49881 50959 86926;86927 86926 -0.037779726737426245 VYMPCLYVY 9 Carbamidomethyl (C) _VYMPC(Carbamidomethyl (C))LYVY_ VYMPC(1)LYVY VYMPC(46)LYVY 0 1 0 ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2;ENST00000467099.6_1_17:18003545-18010551:+|nuORF ENSG00000108591|ENST00000225729|DRG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.28125 2 604.279946 1206.54534 0.65915 0.00039831 -0.3913 -0.00023645 0.26785 0.00016186 604.2797633281051 91.833 0.69289 85.657 85.312 86.005 -6.1757 72 39 2 0 0 0 0.047696 1 60742 60742 45.75 24.879 1 31842000 74653 2587;13769 49882 50960 86928 86928 262 -0.04967208223592934 VYMPDHSYVTI 11 Oxidation (M) _VYM(Oxidation (M))PDHSYVTI_ VYM(1)PDHSYVTI VYM(63)PDHSYVTI 0 0 1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8145751953125 2 670.813196 1339.61184 0.42764 0.00028687 0.24066 0.00016143 0.6683 0.0004483 670.8134302497363 49.099 0.30371 48.727 48.578 48.882 -0.37172 38 14 4 0 0 0 0.014934 1 26366 26366 62.573 50.332 1 7706600 74654 2561 49883 50961 86929 86929 443 -0.04438301127993327 VYMPDHSYVTI 11 Oxidation (M) _VYM(Oxidation (M))PDHSYVTI_ VYM(1)PDHSYVTI VYM(60)PDHSYVTI 0 0 1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.813720703125 2 670.813196 1339.61184 NaN NaN NaN NaN NaN NaN NaN 48.705 1 48.333 47.833 48.833 -0.37172 0 0 0 0.057868 1 26148 26148 60.074 42.631 1 74655 2561 49883 50961 86930 86930 443 -0.04438301127993327 VYMPDHSYVTI 11 Oxidation (M) _VYM(Oxidation (M))PDHSYVTI_ VYM(1)PDHSYVTI VYM(82)PDHSYVTI 0 0 1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3128662109375 2 670.813196 1339.61184 0.62381 0.00041846 -0.28967 -0.00019431 0.33414 0.00022415 670.8130738781434 54.549 0.23 48.684 48.516 48.746 -5.8653 18 14 2 0 0 0 0.0011251 1 34561 34561 81.89 59.154 1 21076000 74656 2561 49883 50961 86931 86931 443 -0.04438301127993327 VYMPDHSYVTI 11 Oxidation (M) _VYM(Oxidation (M))PDHSYVTI_ VYM(1)PDHSYVTI VYM(96)PDHSYVTI 0 0 1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.8153076171875 2 670.813196 1339.61184 0.79183 0.00053117 -0.27992 -0.00018778 0.51191 0.0003434 670.8132472508087 55.012 0.27199 49.091 48.903 49.175 -5.9211 29 16 2 0 0 0 4.6554E-06 1 34891 34891 96.111 70.712 1 17599000 74657 2561 49883 50961 86932 86932 443 -0.04438301127993327 VYMPDHSYVTI 11 Unmodified _VYMPDHSYVTI_ 0 0 0 ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENSG00000108352|ENST00000620260|RAPGEFL1 ENST00000545893.5_1_17:38345052-38350037:+|nuORF ENST00000545893.5_1_17:38345052-38350037:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.8167114257812 2 662.815738 1323.61692 0.51914 0.00034409 0.17393 0.00011528 0.69307 0.00045938 662.815728060838 57.359 0.15049 56.869 56.729 56.88 -0.48974 12 6 2 0 0 0 0.18636 1 31176 31176 32.786 12.332 1 2594400 74658 2561 49883 50962 86933 86933 -0.03193997265361759 VYMVMVKCW 9 Unmodified _VYMVMVKCW_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000178568|Q15303-4|ERBB4 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7808837890625 2 579.779059 1157.54356 2.3117 0.0013403 0.27726 0.00016075 2.589 0.001501 579.7790430943768 93.96 0.39947 93.975 93.785 94.184 0.014244 51 15 5 0 0 0 0.3554 1 52311 52311 14.582 0 1 11178000 74659 901;8760 49884 50963 86934 86934 -0.028905405131808948 VYMVMVKCW 9 Unmodified _VYMVMVKCW_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-5|ERBB3;nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000178568|Q15303-4|ERBB4 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7810668945312 2 579.779059 1157.54356 1.3715 0.00079519 0.025868 1.4998E-05 1.3974 0.00081019 579.7789424901307 100.1 0.17615 93.925 93.838 94.014 -6.1757 29 10 4 0 0 0 0.3554 1 66849 66849 14.582 0 1 111180000 74660 901;8760 49884 50963 86935 86935 -0.028905405131808948 VYMVVSRHL 9 Unmodified _VYMVVSRHL_ 0 0 0 ENST00000481195.5_1_5:133536728-133537609:-|nuORF ENST00000481195.5_1_5:133536728-133537609:-|nuORF ENST00000481195.5_1_5:133536728-133537609:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.53955078125 3 368.539188 1102.59573 1.5122 0.00055731 0.49141 0.0001811 2.0036 0.00073841 368.5394495164439 42.405 0.29281 37.721 37.592 37.885 -4.6846 34 19 2 0 0 0 0.039985 1 25632 25632 53.404 30.668 1 13038000 74661 14076 49885 50964 86936 86936 0.04854082216434108 VYNANINLF 9 Unmodified _VYNANINLF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000107593|Q9P0L9-2|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2796020507812 2 534.279649 1066.54475 0.64329 0.0003437 -3.6611 -0.0019561 -3.0178 -0.0016124 534.2777426925261 73.47 0.66853 72.994 72.674 73.342 -0.47588 45 29 2 0 0 0 0.052168 1 40205 40205 44.407 25.15 1 2053500 74662 3392;2504 49886 50965 86937 86937 0.014134564432197294 VYNANINLF 9 Unmodified _VYNANINLF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000107593|Q9P0L9-2|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.2815551757812 2 534.279649 1066.54475 0.68307 0.00036495 1.5169 0.00081044 2.1999 0.0011754 534.2799898559392 80.826 0.42007 74.65 74.443 74.863 -6.1757 34 22 2 0 0 0 0.023164 1 53014 53014 60.39 22.238 1 22897000 74663 3392;2504 49886 50965 86938 86938 0.014134564432197294 VYNANINLF 9 Unmodified _VYNANINLF_ 0 0 0 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;nc|ENSG00000118762|Q13563-2|PKD2;ENST00000508588.5_1_4:88964466-88973152:+|nuORF;nc|ENSG00000107593|Q9P0L9-2|PKD2L1;nc|ENSG00000107593|Q9P0L9-5|PKD2L1;ENSG00000107593|ENST00000318222|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000107593|Q9P0L9-2|PKD2L1 nc|ENSG00000118762|Q13563-5|PKD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 534.279649 1066.54475 0.14141 7.5555E-05 -0.064174 -3.4287E-05 0.07724 4.1268E-05 534.2790424407426 72.963 0.18775 73.005 72.86 73.048 0.041725 0.0051539 0.0026903 NaN 44.407 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3546400 74664 3392;2504 49886 50965 0.014134564432197294 VYNASNNEL 9 Unmodified _VYNASNNEL_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2410278320312 2 512.240721 1022.46689 -0.37553 -0.00019236 0.04181 2.1417E-05 -0.33372 -0.00017094 512.2407341605993 30.677 0.30789 30.677 30.463 30.771 0 41 14 4 0 0 0 0.39863 1 15896 15896 12.532 1.4171 1 7660400 74665 5452 49887 50966 86939 86939 -0.04344601212812904 VYNASNNEL 9 Unmodified _VYNASNNEL_ 0 0 0 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 ENSG00000142937|ENST00000396651|RPS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2412719726562 2 512.240721 1022.46689 1.2055 0.0006175 -0.58271 -0.00029849 0.62278 0.00031901 512.2403637069 35.898 0.40895 31.705 31.474 31.883 -4.1928 65 25 3 0 0 0 0.070838 2 20821 20821;20954 39.957 21.822 1 21648000 74666 5452 49887 50966 86940;86941 86940 -0.04344601212812904 VYNDVLVTF 9 Unmodified _VYNDVLVTF_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.281982421875 2 535.281857 1068.54916 0.012179 6.5193E-06 0.13856 7.417E-05 0.15074 8.069E-05 535.2822186001041 69.211 0.26912 68.73 68.604 68.873 -0.48071 27 11 3 0 0 0 0.12424 1 37838 37838 30.637 3.7529 1 2892300 + 74667 23814 49888 50967 86942 86942 0.01762920866121931 VYNDVLVTF 9 Unmodified _VYNDVLVTF_ 0 0 0 REV__ENSG00000196305|ENST00000443024|IARS1 REV__ENSG00000196305|ENST00000443024|IARS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.281857 1068.54916 0.012179 6.5193E-06 0.13856 7.417E-05 0.15074 8.069E-05 535.2822186001041 69.211 0.26912 68.73 68.604 68.873 -0.48071 -0.015306 -0.00025722 NaN 30.637 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2892300 + 74668 23814 49888 50967 0.01762920866121931 VYNEAGVTF 9 Unmodified _VYNEAGVTF_ 0 0 0 ENSG00000148672|ENST00000277865|GLUD1;nc|ENSG00000148672|P00367-2|GLUD1;nc|ENSG00000148672|P00367-3|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 ENSG00000148672|ENST00000277865|GLUD1 MSMS AL20221201_MKP_PDAC_01 4 500.2444763183594 2 500.242732 998.470912 NaN NaN NaN NaN NaN NaN NaN 59.498 1 53.384 52.884 53.884 -6.1147 0 0 0 0.068038 1 38206 38206 51.63 19.324 1 74669 5952 49889 50968 86943 86943 -0.028385117190964593 VYNEDFRSF 9 Unmodified _VYNEDFRSF_ 0 0 0 nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B nc|ENSG00000264522|Q6GQQ9-2|OTUD7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 392.8488159179688 3 392.848856 1175.52474 NaN NaN NaN NaN NaN NaN NaN 29.929 1 29.929 29.429 30.429 0 0 0 0 0.84369 1 15527 15527 1.1933 0 1 74670 10857 49890 50969 86944 86944 -0.05600339287411771 VYNEGVLI 8 Unmodified _VYNEGVLI_ 0 0 0 REV__nc|ENSG00000120156|Q02763-3|TEK REV__nc|ENSG00000120156|Q02763-3|TEK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.7510375976562 2 453.750193 905.485833 0.35396 0.00016061 3.4485 0.0015647 3.8024 0.0017253 453.75044906986136 71.027 0.35777 70.549 70.368 70.726 -0.47736 33 15 3 0 0 0 0.5284 1 38849 38849 32.117 3.6301 1 926740 + 74671 19230 49891 50970 86945 86945 0.029309801489034726 VYNENLVHM 9 Oxidation (M) _VYNENLVHM(Oxidation (M))_ VYNENLVHM(1) VYNENLVHM(96) 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7655029296875 2 567.766049 1133.51754 -0.3101 -0.00017606 -1.0461 -0.00059393 -1.3562 -0.00076999 567.7656604441481 29.822 0.38536 29.822 29.608 29.994 0 58 21 4 0 0 0 0.0082485 1 15438 15438 96.285 52.426 1 28197000 74672 3251 49892 50971 86946 86946 583 -0.04387395159460539 VYNENLVHM 9 Oxidation (M) _VYNENLVHM(Oxidation (M))_ VYNENLVHM(1) VYNENLVHM(110) 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7655029296875 2 567.766049 1133.51754 1.0008 0.0005682 -0.34465 -0.00019568 0.65612 0.00037252 567.7658339698062 34.347 0.41498 30.252 30.023 30.438 -4.0951 60 23 3 0 0 0 0.0071894 2 19854 19721;19854 111.29 55.11 1 37729000 74673 3251 49892 50971 86947;86948 86948 583 -0.04387395159460539 VYNENLVHM 9 Unmodified _VYNENLVHM_ 0 0 0 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7693481445312 2 559.768591 1117.52263 1.0026 0.0005612 0.38018 0.00021281 1.3827 0.00077401 559.7690217925185 49.797 0.38958 44.258 44.141 44.531 -5.5391 77 24 4 0 0 0 0.011968 1 31250 31250 74.929 40.527 1 114540000 74674 3251 49892 50972 86949 86949 -0.031430912968289704 VYNENLVHMI 10 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ VYNENLVHM(1)I VYNENLVHM(110)I 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.3067016601562 2 624.308081 1246.60161 0.57545 0.00035926 -0.99099 -0.00061868 -0.41554 -0.00025942 624.3076477166271 45.874 0.39936 45.874 45.644 46.044 0 73 19 5 0 0 0 0.00080371 3 24978 24958;24978;25098 114.65 72.809 1 140880000 74675 3251 49893 50973 86950;86951;86952 86951 583 -0.011828640625481057 VYNENLVHMI 10 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ VYNENLVHM(1)I VYNENLVHM(85)I 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.3081665039062 2 624.308081 1246.60161 0.27068 0.00016899 -0.25381 -0.00015845 0.016874 1.0535E-05 624.3079808578839 46.181 0.29069 45.845 45.686 45.976 -0.33664 54 14 5 0 0 0 0.01132 2 24747 24646;24747 85.272 44.326 1 83530000 74676 3251 49893 50973 86953;86954 86954 583 -0.011828640625481057 VYNENLVHMI 10 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ VYNENLVHM(1)I VYNENLVHM(61)I 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.30908203125 2 624.308081 1246.60161 0.5334 0.00033301 0.35367 0.0002208 0.88708 0.00055381 624.3088109162584 45.923 0.23393 45.895 45.763 45.997 -0.028011 25 10 3 0 0 0 0.043729 1 24667 24667 61.357 43.211 1 4619000 74677 3251 49893 50973 86955 86955 583 -0.011828640625481057 VYNENLVHMI 10 Oxidation (M) _VYNENLVHM(Oxidation (M))I_ VYNENLVHM(1)I VYNENLVHM(93)I 0 0 1 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.30810546875 2 624.308081 1246.60161 0.35154 0.00021947 -2.1406 -0.0013364 -1.789 -0.0011169 624.3065132743592 51.664 0.37317 46.015 45.863 46.236 -5.649 66 23 4 0 0 0 0.0072789 2 32636 32510;32636 92.653 30.081 1 186540000 74678 3251 49893 50973 86956;86957 86957 583 -0.011828640625481057 VYNENLVHMI 10 Unmodified _VYNENLVHMI_ 0 0 0 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.3114013671875 2 616.310623 1230.60669 0.82476 0.00050831 -1.0412 -0.00064168 -0.21639 -0.00013337 616.3101684686293 60.334 0.2729 60.334 60.178 60.451 0 24 11 3 0 0 0 0.060508 1 33643 33643 55.503 20.571 1 3406200 74679 3251 49893 50974 86958 86958 0.0006143980008346261 VYNENLVHMI 10 Unmodified _VYNENLVHMI_ 0 0 0 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.3106689453125 2 616.310623 1230.60669 -0.070938 -4.372E-05 -0.52545 -0.00032384 -0.59638 -0.00036756 616.3105931361678 60.852 0.30632 60.363 60.168 60.475 -0.48932 29 14 4 0 0 0 0.046375 1 33165 33165 60.074 29.849 1 32402000 74680 3251 49893 50974 86959 86959 0.0006143980008346261 VYNENLVHMI 10 Unmodified _VYNENLVHMI_ 0 0 0 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.310546875 2 616.310623 1230.60669 0.63925 0.00039397 -1.2704 -0.00078299 -0.6312 -0.00038901 616.3102366197672 66.114 0.882 59.938 59.559 60.441 -6.1757 132 50 4 0 0 0 0.01074 4 42986 42854;42986;43123;43257 86.332 53.546 1 224870000 74681 3251 49893 50974 86960;86961;86962;86963 86961 0.0006143980008346261 VYNENLVHMI 10 Unmodified _VYNENLVHMI_ 0 0 0 ENST00000425064.1_1_1:100858662-100858893:-|nuORF;ENSG00000116752|ENST00000369541|BCAS2 ENST00000425064.1_1_1:100858662-100858893:-|nuORF ENST00000425064.1_1_1:100858662-100858893:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.31005859375 2 616.310623 1230.60669 0.45822 0.0002824 -0.45521 -0.00028055 0.003011 1.8557E-06 616.3107162230707 66.878 0.59225 60.702 60.428 61.02 -6.1757 69 33 3 0 0 0 0.01074 3 43537 43395;43537;43689 86.332 56.107 1 57625000 74682 3251 49893 50974 86964;86965;86966 86965 0.0006143980008346261 VYNEQIHDL 9 Unmodified _VYNEQIHDL_ 0 0 0 nc|ENSG00000186185|Q86Y91-6|KIF18B;ENSG00000186185|ENST00000593135|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B nc|ENSG00000186185|Q86Y91-6|KIF18B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.777587890625 2 565.77747 1129.54039 0.4783 0.00027061 -0.57638 -0.0003261 -0.098077 -5.549E-05 565.7773571652518 37.032 0.34385 37.032 36.857 37.201 0 33 16 3 0 0 0 0.07087 1 19645 19645 39.95 9.3132 1 5005300 74683 9459 49894 50975 86967 86967 -0.019200527703333137 VYNEQIRDLL 10 Unmodified _VYNEQIRDLL_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.3416137695312 2 631.840602 1261.66665 0.39175 0.00024753 -0.96512 -0.0006098 -0.57336 -0.00036227 631.8400554902406 59.666 0.24104 59.666 59.532 59.773 0 17 10 2 0 0 0 0.25106 1 33230 33230 40.725 28.193 1 2795300 74684 3590 49895 50976 86968 86968 0.046284537349492894 VYNEQIRDLL 10 Unmodified _VYNEQIRDLL_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.8450317382812 2 631.840602 1261.66665 -0.20454 -0.00012924 1.4127 0.00089258 1.2081 0.00076334 631.8420755023726 60.205 0.13554 59.714 59.63 59.766 -0.49079 8 6 2 0 0 0 0.084474 1 32785 32785 65.474 23.634 1 3501300 74685 3590 49895 50976 86969 86969 0.046284537349492894 VYNEQIRDLL 10 Unmodified _VYNEQIRDLL_ 0 0 0 ENSG00000121621|ENST00000263181|KIF18A;ENST00000533466.1_1_11:28098218-28119398:-|nuORF ENSG00000121621|ENST00000263181|KIF18A ENSG00000121621|ENST00000263181|KIF18A MSMS AL20221201_MKP_PDAC_01 4 631.8379516601562 2 631.840602 1261.66665 NaN NaN NaN NaN NaN NaN NaN 65.661 1 59.485 58.985 59.985 -6.1757 0 0 0 0.028151 1 42637 42637 110.79 44.336 1 74686 3590 49895 50976 86970 86970 0.046284537349492894 VYNGRLKVQRL 11 Unmodified _VYNGRLKVQRL_ 0 0 0 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 ENSG00000159079|ENST00000290155|CFAP298 MULTI-MSMS AL20221201_MKP_PDAC_01 4 449.2738647460938 3 449.273611 1344.799 1.0154 0.00045621 -0.30413 -0.00013664 0.71129 0.00031957 449.2732961820143 30.281 0.1965 26.784 26.698 26.895 -3.497 14 9 2 0 0 0 0.046614 1 17096 17096 41.347 21.721 1 14605000 74687 6624 49896 50977 86971 86971 0.14039523262385956 VYNHRFHKI 9 Unmodified _VYNHRFHKI_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.225341796875 3 405.22448 1212.65161 -0.17014 -6.8945E-05 1.3665 0.00055375 1.1964 0.0004848 405.225305881066 15.365 0.080975 15.371 15.317 15.398 0.0057774 7 4 2 0 0 0 0.4887 1 7657 7657 8.1555 3.966 1 1104900 74688 3029 49897 50978 86972 86972 0.053790514482670915 VYNHRFHKI 9 Unmodified _VYNHRFHKI_ 0 0 0 ENST00000485450.5_1_3:49315728-49349110:-|nuORF;nc|ENSG00000114316|Q13107-2|USP4;ENSG00000114316|ENST00000265560|USP4 ENST00000485450.5_1_3:49315728-49349110:-|nuORF ENST00000485450.5_1_3:49315728-49349110:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.2251281738281 3 405.22448 1212.65161 0.28425 0.00011519 -0.13682 -5.5441E-05 0.14744 5.9745E-05 405.22436779860334 16.479 0.18309 13.922 13.835 14.018 -2.557 48 27 2 0 0 0 0.2546 1 8508 8508 19.362 13.128 1 4900100 74689 3029 49897 50978 86973 86973 0.053790514482670915 VYNIHLAVNF 10 Unmodified _VYNIHLAVNF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.3217163085938 2 595.321848 1188.62914 0.010115 6.022E-06 0.23293 0.00013867 0.24305 0.00014469 595.3219279515203 72.271 0.52911 72.313 72.151 72.68 0.041733 51 24 3 0 0 0 0.04428 2 39760 39760;39865 81.89 51.992 1 16703000 74690 10143 49898 50979 86974;86975 86974 0.04237407260006876 VYNIHLAVNF 10 Unmodified _VYNIHLAVNF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3223266601562 2 595.321848 1188.62914 -0.24184 -0.00014397 0.2469 0.00014699 0.005058 3.0112E-06 595.321827632908 85.29 1.1667 79.114 78.429 79.596 -6.1757 142 70 3 0 0 0 0.0015532 5 56242 55844;55978;56105;56242;56379 131.27 93.294 1 41977000 74691 10143 49898 50979 86976;86977;86978;86979;86980 86979 0.04237407260006876 VYNIHLAVNF 10 Unmodified _VYNIHLAVNF_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MSMS AL20221201_MKP_PDAC_01 4 595.3215942382812 2 595.321848 1188.62914 NaN NaN NaN NaN NaN NaN NaN 84.666 1 78.49 77.99 78.99 -6.1757 0 0 0 0.26278 1 55714 55714 53.833 32.296 1 74692 10143 49898 50979 86981 86981 0.04237407260006876 VYNIHLAVNFL 11 Unmodified _VYNIHLAVNFL_ 0 0 0 ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF ENSG00000198755|ENST00000322203|RPL10A ENSG00000198755|ENST00000322203|RPL10A MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.8652954101562 2 651.86388 1301.71321 0.973 0.00063426 -0.24633 -0.00016057 0.72667 0.00047369 651.863913526915 98.499 0.1282 92.324 92.237 92.365 -6.1757 19 8 3 0 0 0 5.7099E-11 1 65326 65326 122.18 78.407 1 49870000 74693 10143 49899 50980 86982 86982 0.07441938356896571 VYNKCWKF 8 Carbamidomethyl (C) _VYNKC(Carbamidomethyl (C))WKF_ VYNKC(1)WKF VYNKC(64)WKF 0 1 0 ENSG00000085063|ENST00000642928|CD59;nc|ENSG00000284969|P13987-2|CD59 ENSG00000085063|ENST00000642928|CD59 ENSG00000085063|ENST00000642928|CD59 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.78466796875 2 572.784044 1143.55354 0.43829 0.00025104 0.10856 6.2183E-05 0.54685 0.00031323 572.7840378417521 40.231 0.45647 35.701 35.496 35.952 -4.5294 90 37 3 0 0 0 0.23628 2 23953 23953;24085 64.236 48.389 1 57428000 74694 1400 49900 50981 86983;86984 86983 132 -0.012498931919481038 VYNKIEIY 8 Unmodified _VYNKIEIY_ 0 0 0 REV__ENST00000476941.5_1_3:142525091-142525199:+|nuORF REV__ENST00000476941.5_1_3:142525091-142525199:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 521.2846069335938 2 521.2844 1040.55425 NaN NaN NaN NaN NaN NaN NaN 57.801 1 51.774 51.274 52.274 -6.0275 0 0 0 0.4637 1 36990 36990 44.407 8.28 1 + 74695 27603 49901 50982 86985 86985 0.035592247287468126 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8823852539062 3 362.88172 1085.62333 -0.48954 -0.00017764 1.0027 0.00036388 0.5132 0.00018623 362.8821802990812 41.405 0.20142 41.405 41.261 41.462 0 15 9 2 0 0 0 0.41742 1 22357 22357 7.609 0.50723 1 3406900 74696 7456 49902 50983 86986 86986 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8824157714844 3 362.88172 1085.62333 -0.33898 -0.00012301 0.27446 9.9595E-05 -0.064522 -2.3414E-05 362.8818575666108 41.65 0.32684 41.343 41.148 41.475 -0.30682 40 14 4 0 0 0 0.06294 2 22029 22029;22143 45.74 15.899 1 56427000 74697 7456 49902 50983 86987;86988 86987 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.8819580078125 3 362.88172 1085.62333 -0.12906 -4.6834E-05 -0.1388 -5.0369E-05 -0.26786 -9.7202E-05 362.8816769954819 41.372 0.37511 41.37 41.159 41.534 -0.0017929 49 17 4 0 0 0 0.06294 2 22053 22053;22163 45.74 29.174 1 56128000 74698 7456 49902 50983 86989;86990 86989 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.8193969726562 2 543.818941 1085.62333 -0.048563 -2.6409E-05 -0.27135 -0.00014756 -0.31991 -0.00017397 543.8187092752186 41.381 0.22351 41.38 41.221 41.444 -0.0017929 19 10 3 0 0 0 0.001066 1 22099 22099 139.14 80.46 1 6297200 74699 7456 49902 50983 86991 86991 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.8187866210938 2 543.818941 1085.62333 0.54174 0.00029461 -0.13961 -7.5922E-05 0.40213 0.00021869 543.8187875572587 45.599 0.48321 40.644 40.41 40.894 -4.9549 91 32 4 0 0 0 0.00023314 3 27909 27909;28050;28200 149.91 91.235 1 113200000 74700 7456 49902 50983 86992;86993;86994 86992 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8821105957031 3 362.88172 1085.62333 1.3172 0.000478 0.15912 5.7742E-05 1.4763 0.00053574 362.88172917932525 45.599 0.57659 40.645 40.375 40.951 -4.9549 131 38 4 0 0 0 0.011968 3 28098 27958;28098;28259 67.838 44.048 1 408540000 74701 7456 49902 50983 86995;86996;86997 86996 0.08394308748324875 VYNKVHITL 9 Unmodified _VYNKVHITL_ 0 0 0 ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF ENSG00000166228|ENST00000299299|PCBD1 ENSG00000166228|ENST00000299299|PCBD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 543.818941 1085.62333 -0.5493 -0.00029872 0.31374 0.00017062 -0.23556 -0.0001281 544.3207686029787 41.616 0.15216 41.309 41.259 41.411 -0.30682 -0.012543 0.00010419 NaN 139.14 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 8131300 74702 7456 49902 50983 0.08394308748324875 VYNLKAMIL 9 Unmodified _VYNLKAMIL_ 0 0 0 REV__ENSG00000165914|ENST00000328459|TTC7B REV__ENSG00000165914|ENST00000328459|TTC7B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8125610351562 2 532.81227 1063.60999 1.0408 0.00055455 -1.043 -0.0005557 -0.0021446 -1.1427E-06 532.8113729509641 71.274 0.35951 71.313 71.13 71.49 0.039024 51 15 4 0 0 0 0.06187 1 39203 39203 42.095 0.25493 1 15491000 + 74703 22063 49903 50984 86998 86998 0.08072734644724733 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(56)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.8345336914062 2 669.834797 1337.65504 -0.13067 -8.7527E-05 -0.32358 -0.00021674 -0.45425 -0.00030427 669.8345535440593 32.354 0.23013 32.225 32.12 32.35 -0.12915 14 9 2 0 0 0 0.0575 1 16854 16854 56.177 39.064 1 2340200 74704 3102 49904 50985 86999 86999 543 -0.00028066560025763465 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(42)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.3361206054688 2 669.834797 1337.65504 -0.21093 -0.00014129 -0.55566 -0.0003722 -0.76659 -0.00051349 670.3362467102203 32.579 0.2019 32.45 32.35 32.552 -0.12915 17 8 3 0 0 0 0.13391 1 16989 16989 41.84 28.797 1 3006800 74705 3102 49904 50985 87000 87000 543 -0.00028066560025763465 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(65)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.8350830078125 2 669.834797 1337.65504 0.10977 7.353E-05 -0.51481 -0.00034484 -0.40504 -0.00027131 669.8341989215068 32.257 0.19292 32.287 32.173 32.366 0.029747 22 8 3 0 0 0 0.035736 1 16906 16906 65.235 42.499 1 10304000 74706 3102 49904 50985 87001 87001 543 -0.00028066560025763465 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(59)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.83447265625 2 669.834797 1337.65504 0.14652 9.8142E-05 -0.58099 -0.00038917 -0.43448 -0.00029103 669.8346530154282 32.48 0.22491 32.51 32.366 32.591 0.029743 22 8 3 0 0 0 0.04925 1 17022 17022 58.679 35.943 1 5180700 74707 3102 49904 50985 87002 87002 543 -0.00028066560025763465 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(120)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.335693359375 2 669.834797 1337.65504 0.32408 0.00021708 -0.28367 -0.00019001 0.040407 2.7066E-05 669.83454462787 36.266 0.40833 32.073 31.87 32.278 -4.1928 58 24 3 0 0 0 0.00060102 2 21226 21095;21226 115.69 91.671 1 27447000 74708 3102 49904 50985 87003;87004 87004 543 -0.00028066560025763465 VYNNIMRHYL 10 Oxidation (M) _VYNNIM(Oxidation (M))RHYL_ VYNNIM(1)RHYL VYNNIM(82)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 670.3357543945312 2 669.834797 1337.65504 0.29211 0.00019566 -0.42421 -0.00028415 -0.1321 -8.8487E-05 669.834859427093 36.549 0.29451 32.265 32.143 32.438 -4.2835 38 18 3 0 0 0 0.013171 1 21347 21347 81.89 58.1 1 26113000 74709 3102 49904 50985 87005 87005 543 -0.00028066560025763465 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 441.5614929199219 3 441.560652 1321.66013 1.1587 0.00051162 -0.58372 -0.00025775 0.57495 0.00025387 441.5605255714346 47.264 0.37115 47.225 47.064 47.435 -0.038216 68 17 6 0 0 0 0.03037 2 25397 25397;25497 67.838 56.343 1 84422000 74710 3102 49904 50986 87006;87007 87006 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 662.3394165039062 2 661.837339 1321.66013 1.1897 0.00078738 -0.59841 -0.00039605 0.59128 0.00039133 661.8373997042894 47.256 0.18158 47.219 47.14 47.322 -0.036201 22 8 3 0 0 0 0.0081376 1 25452 25452 107.19 76.55 1 3935000 74711 3102 49904 50986 87008 87008 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.5614318847656 3 441.560652 1321.66013 0.77182 0.00034081 -0.31514 -0.00013915 0.45669 0.00020165 441.56055412884626 52.246 0.4368 46.511 46.289 46.726 -5.7345 67 26 3 0 0 0 0.0086576 2 32876 32876;33006 90.135 70.148 1 166050000 74712 3102 49904 50986 87009;87010 87009 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.8364868164062 2 661.837339 1321.66013 0.28569 0.00018908 -0.014458 -9.5688E-06 0.27123 0.00017951 661.8376266332281 52.264 0.3883 46.529 46.319 46.707 -5.7345 38 23 2 0 0 0 9.8271E-06 2 33040 32911;33040 139.14 104.21 1 52624000 74713 3102 49904 50986 87011;87012 87012 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.5602111816406 3 441.560652 1321.66013 0.96046 0.0004241 0.012354 5.4552E-06 0.97281 0.00042955 441.56065284968196 68.707 2.347 62.531 61.567 63.914 -6.1757 262 133 2 0 0 0 0.012329 12 45339 44300;44439;44579;44711;44838;44963;45090;45214;45339;45465;45583;45706 83.429 83.429 1 67800000 74714 3102 49904 50986 87013;87014;87015;87016;87017;87018;87019;87020;87021;87022;87023;87024 87021 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.83837890625 2 661.837339 1321.66013 0.46783 0.00030963 0.77564 0.00051335 1.2435 0.00082298 661.8379182170821 68.619 1.2649 62.443 61.636 62.901 -6.1757 131 73 2 0 0 0 1.0182E-10 7 44937 44389;44526;44659;44795;44807;44937;45071 172.91 149.12 1 28748000 74715 3102 49904 50986 87025;87026;87027;87028;87029;87030;87031 87030 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MSMS AL20221201_MKP_PDAC_01 4 441.5612487792969 3 441.560652 1321.66013 NaN NaN NaN NaN NaN NaN NaN 67.724 1 61.549 61.049 62.049 -6.1757 0 0 0 0.29999 1 44140 44140 37.075 28.323 1 74716 3102 49904 50986 87032 87032 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MSMS AL20221201_MKP_PDAC_01 4 661.8378295898438 2 661.837339 1321.66013 NaN NaN NaN NaN NaN NaN NaN 69.311 1 63.135 62.635 63.635 -6.1757 0 0 0 0.0020162 1 45268 45268 123.45 93.61 1 74717 3102 49904 50986 87033 87033 0.012162373025830675 VYNNIMRHYL 10 Unmodified _VYNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MSMS AL20221201_MKP_PDAC_01 4 441.5609741210938 3 441.560652 1321.66013 NaN NaN NaN NaN NaN NaN NaN 70.287 1 64.111 63.611 64.611 -6.1757 0 0 0 0.01668 1 45924 45924 74.2 51.542 1 74718 3102 49904 50986 87034 87034 0.012162373025830675 VYNNKAAVL 9 Unmodified _VYNNKAAVL_ 0 0 0 nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA nc|ENSG00000138814|Q08209-5|PPP3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2817687988281 2 496.282192 990.549831 -0.49133 -0.00024384 0.46991 0.00023321 -0.021413 -1.0627E-05 496.28226265891743 30.604 0.18732 30.604 30.503 30.69 0 15 8 2 0 0 0 0.37804 1 15910 15910 13.508 4.1604 1 865100 74719 5112;2515 49905 50987 87035 87035 0.05417760305840602 VYNNNSSRF 9 Unmodified _VYNNNSSRF_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7593994140625 2 550.759612 1099.50467 -0.078582 -4.328E-05 -0.54757 -0.00030158 -0.62616 -0.00034486 550.7592776542228 21.561 0.25762 21.561 21.421 21.679 0 67 35 2 0 0 0 0.036857 2 10940 10839;10940 51.63 33.483 1 2224900 74720 5706 49906 50988 87036;87037 87037 -0.04110090227322871 VYNNNSSRF 9 Unmodified _VYNNNSSRF_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7579345703125 2 550.759612 1099.50467 NaN NaN NaN NaN NaN NaN NaN 21.454 1 21.483 20.983 21.983 0.028357 0 0 0 0.18351 1 10887 10887 32.786 14.639 1 74721 5706 49906 50988 87038 87038 -0.04110090227322871 VYNNNSSRF 9 Unmodified _VYNNNSSRF_ 0 0 0 ENSG00000145555|ENST00000513610|MYO10;MYO10|p.Y1527Tfs*26|1|0.39|ENSG00000145555|chr5:16676118-16676118|A/-|frameshift_variant ENSG00000145555|ENST00000513610|MYO10 ENSG00000145555|ENST00000513610|MYO10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7599487304688 2 550.759612 1099.50467 0.18777 0.00010342 0.50018 0.00027548 0.68795 0.00037889 550.7597675814301 24.049 0.31609 21.222 21.024 21.34 -2.8273 43 17 3 0 0 0 0.012668 2 13098 12983;13098 72.968 44.933 1 9798000 74722 5706 49906 50988 87039;87040 87040 -0.04110090227322871 VYNNSRMLHF 10 Unmodified _VYNNSRMLHF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5447998046875 3 427.545002 1279.61318 -0.2204 -9.4233E-05 -0.063811 -2.7282E-05 -0.28422 -0.00012151 427.54465779911516 41.679 0.20863 41.677 41.553 41.762 -0.0017929 11 9 2 0 0 0 0.38026 1 22296 22296 22.775 7.0363 1 6462400 74723 7770 49907 50989 87041 87041 -0.01544622248570704 VYNNSRMLHF 10 Unmodified _VYNNSRMLHF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5451354980469 3 427.545002 1279.61318 0.91451 0.00039099 -0.004564 -1.9513E-06 0.90995 0.00038904 427.54505586065505 45.834 0.52213 40.879 40.626 41.148 -4.9549 106 34 4 0 0 0 0.20771 2 28100 28100;28241 32.898 17.941 1 133570000 74724 7770 49907 50989 87042;87043 87042 -0.01544622248570704 VYNNSRMLHF 10 Unmodified _VYNNSRMLHF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.8150634765625 2 640.813864 1279.61318 0.5705 0.00036558 0.83178 0.00053302 1.4023 0.0008986 640.8146303741903 45.841 0.35128 40.887 40.698 41.049 -4.9549 50 22 3 0 0 0 0.0018732 2 28278 28128;28278 114.19 81.881 1 22378000 74725 7770 49907 50989 87044;87045 87045 -0.01544622248570704 VYNNSRMLHF 10 Oxidation (M) _VYNNSRM(Oxidation (M))LHF_ VYNNSRM(1)LHF VYNNSRM(72)LHF 0 0 1 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.8126220703125 2 648.811322 1295.60809 1.2765 0.00082824 -0.19548 -0.00012683 1.0811 0.00070141 648.8111047084868 35.954 0.45021 31.761 31.512 31.962 -4.1928 63 28 3 0 0 0 0.024351 2 20855 20855;20990 71.708 45.44 1 15274000 74726 7770 49907 50990 87046;87047 87046 1324 -0.027889261112022723 VYNPELDKW 9 Unmodified _VYNPELDKW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.2921752929688 2 582.290214 1162.56587 0.59954 0.00034911 -0.30704 -0.00017879 0.2925 0.00017032 582.2899760790256 49.667 0.19411 49.667 49.56 49.754 0 14 8 2 0 0 0 0.069655 1 27367 27367 40.239 20.877 1 2839300 74727 8757 49908 50991 87048 87048 -0.008905782479359914 VYNPELDKW 9 Unmodified _VYNPELDKW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2926025390625 2 582.290214 1162.56587 0.79312 0.00046183 1.8618 0.0010841 2.6549 0.0015459 582.2910693038343 50.128 0.22454 49.735 49.627 49.851 -0.3923 21 10 3 0 0 0 0.044296 1 27004 27004 47.594 23.574 1 2294900 74728 8757 49908 50991 87049 87049 -0.008905782479359914 VYNPELDKW 9 Unmodified _VYNPELDKW_ 0 0 0 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 ENSG00000178502|ENST00000319121|KLHL11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.2908325195312 2 582.290214 1162.56587 0.9474 0.00055166 1.0075 0.00058665 1.9549 0.0011383 582.2904254513611 55.644 0.4122 49.723 49.525 49.937 -5.9211 59 24 3 0 0 0 0.012668 2 35349 35349;35474 72.968 47.977 1 42104000 74729 8757 49908 50991 87050;87051 87050 -0.008905782479359914 VYNPMPFEL 9 Oxidation (M) _VYNPM(Oxidation (M))PFEL_ VYNPM(1)PFEL VYNPM(51)PFEL 0 0 1 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2688598632812 2 563.267893 1124.52123 0.73475 0.00041386 0.65766 0.00037044 1.3924 0.0007843 563.2681821630034 71.995 0.49459 71.519 71.319 71.813 -0.4761 43 20 4 0 0 0 0.038285 1 39358 39358 50.855 27.707 1 4516600 74730 7643 49909 50992 87052 87052 1304 -0.03604725385616803 VYNPMPFEL 9 Unmodified _VYNPMPFEL_ 0 0 0 nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;nc|ENSG00000167632|Q96Q05-2|TRAPPC9;ENST00000521667.5_1_8:140743306-141301208:-|nuORF nc|ENSG00000167632|Q96Q05-3|TRAPPC9 nc|ENSG00000167632|Q96Q05-3|TRAPPC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2711791992188 2 555.270435 1108.52632 0.66207 0.00036763 0.11834 6.5712E-05 0.78041 0.00043334 555.2702566282951 89.54 0.32878 89.038 88.843 89.172 -0.50171 36 13 4 0 0 0 0.30562 1 48930 48930 16.942 9.0321 1 1488100 74731 7643 49909 50993 87053 87053 -0.023604215229852343 VYNPNQVRM 9 Oxidation (M) _VYNPNQVRM(Oxidation (M))_ VYNPNQVRM(1) VYNPNQVRM(52) 0 0 1 ENSG00000129484|ENST00000429687|PARP2;nc|ENSG00000129484|Q9UGN5|PARP2 ENSG00000129484|ENST00000429687|PARP2 ENSG00000129484|ENST00000429687|PARP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.778076171875 2 568.77949 1135.54443 0.25519 0.00014515 -2.4497 -0.0013933 -2.1945 -0.0012482 568.7783735264361 23.142 0.20053 20.364 20.217 20.418 -2.7784 22 14 2 0 0 0 0.03568 1 12454 12454 52.268 10.313 1 3598300 74732 4142 49910 50994 87054 87054 738 -0.0179228654826602 VYNPRIRAEF 10 Unmodified _VYNPRIRAEF_ 0 0 0 ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-2|DQX1 ENSG00000144045|ENST00000404568|DQX1 ENSG00000144045|ENST00000404568|DQX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.231689453125 3 422.231412 1263.67241 0.026072 1.1008E-05 0.29993 0.00012664 0.326 0.00013765 422.2314640580253 38.153 0.19463 38.17 38.071 38.265 0.01704 19 8 3 0 0 0 0.5543 1 20281 20281 13.519 5.0744 1 3658800 74733 5581 49911 50995 87055 87055 0.05111597037262072 VYNPRIRAEF 10 Unmodified _VYNPRIRAEF_ 0 0 0 ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-2|DQX1 ENSG00000144045|ENST00000404568|DQX1 ENSG00000144045|ENST00000404568|DQX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2377014160156 3 422.231412 1263.67241 1.0394 0.00043886 0.38007 0.00016048 1.4194 0.00059934 422.2316184674556 43.009 0.27736 38.324 38.153 38.431 -4.6846 30 17 2 0 0 0 0.47059 2 25991 25991;26037 17.863 5.6884 1 14430000 74734 5581 49911 50995 87056;87057 87056 0.05111597037262072 VYNPSASLL 9 Unmodified _VYNPSASLL_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-4|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.2607727050781 2 482.260925 962.507297 0.80972 0.0003905 -0.9681 -0.00046687 -0.15837 -7.6376E-05 482.2606401364349 67.503 0.42731 61.327 61.052 61.48 -6.1757 40 23 2 0 0 0 0.070838 1 43876 43876 39.957 9.3208 1 12534000 74735 8186 49912 50996 87058 87058 0.02454365177618456 VYNPTRNEW 9 Unmodified _VYNPTRNEW_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.782958984375 2 589.783087 1177.55162 -0.22324 -0.00013166 1.319 0.00077795 1.0958 0.00064629 589.7836135234965 37.241 0.31634 36.969 36.798 37.114 -0.27133 28 12 3 0 0 0 0.017075 1 19548 19548 66.457 32.055 1 3718400 74736 6856 49913 50997 87059 87059 -0.030052306761945147 VYNPTRNEW 9 Unmodified _VYNPTRNEW_ 0 0 0 ENSG00000162413|ENST00000377658|KLHL21;nc|ENSG00000162413|Q9UJP4-2|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 ENSG00000162413|ENST00000377658|KLHL21 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 589.783087 1177.55162 0.3576 0.0002109 -2.8585 -0.0016859 -2.5009 -0.001475 590.2808059440541 36.904 0.22202 36.904 36.796 37.018 0 -0.032826 -0.0046662 NaN 66.457 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2494300 74737 6856 49913 50997 -0.030052306761945147 VYNPVIYVF 9 Unmodified _VYNPVIYVF_ 0 0 0 ENSG00000054277|ENST00000366554|OPN3;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3023681640625 2 557.302593 1112.59063 0.59401 0.00033105 -0.65473 -0.00036488 -0.060714 -3.3836E-05 557.3025831579266 94.864 0.15977 94.496 94.402 94.562 -0.36815 10 6 2 0 0 0 0.53666 1 51833 51833 5.2307 0 1 348570 74738 757 49914 50998 87060 87060 0.03884101625453695 VYNPVIYVF 9 Unmodified _VYNPVIYVF_ 0 0 0 ENSG00000054277|ENST00000366554|OPN3;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3046875 2 557.302593 1112.59063 2.2551 0.0012568 0.73929 0.00041201 2.9944 0.0016688 557.3029651346807 94.41 0.43513 94.424 94.158 94.594 0.014244 36 15 3 0 0 0 0.019979 2 52420 52420;52521 63.563 40.827 1 3210200 74739 757 49914 50998 87061;87062 87061 0.03884101625453695 VYNPVRAEW 9 Unmodified _VYNPVRAEW_ 0 0 0 ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2908325195312 2 567.290548 1132.56654 0.92792 0.0005264 0.41481 0.00023532 1.3427 0.00076172 567.2907283106343 49.584 0.23854 49.192 49.057 49.296 -0.3923 26 11 3 0 0 0 0.10134 1 26667 26667 41.956 16.556 1 4456500 74740 7361 49915 50999 87063 87063 0.005562611917866889 VYNPVRAEW 9 Unmodified _VYNPVRAEW_ 0 0 0 ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 ENSG00000165572|ENST00000379485|KBTBD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.290771484375 2 567.290548 1132.56654 1.285 0.00072895 -1.4363 -0.00081483 -0.15137 -8.5874E-05 567.2901794756168 55.217 0.39501 49.296 49.031 49.426 -5.9211 39 24 2 0 0 0 0.014182 2 35204 35059;35204 75.761 41.658 1 53239000 74741 7361 49915 50999 87064;87065 87065 0.005562611917866889 VYNQIKEFI 9 Unmodified _VYNQIKEFI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.31640625 2 577.316232 1152.61791 0.38677 0.00022329 0.32362 0.00018683 0.71038 0.00041011 577.3161944539133 59.135 0.2366 58.644 58.535 58.771 -0.49079 25 10 3 0 0 0 0.021948 1 32167 32167 61.602 36.611 1 3014900 74742 5578 49916 51000 87066 87066 0.04770585165852026 VYNQIKEFI 9 Unmodified _VYNQIKEFI_ 0 0 0 nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B nc|ENSG00000144036|Q9Y2D4-2|EXOC6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3167114257812 2 577.316232 1152.61791 1.4758 0.00085199 -4.4025 -0.0025416 -2.9267 -0.0016896 577.3138347910174 64.447 0.16573 58.272 58.15 58.315 -6.1757 10 8 2 0 0 0 0.13231 1 41737 41737 29.841 7.1043 1 9444600 74743 5578 49916 51000 87067 87067 0.04770585165852026 VYNQPGHQF 9 Unmodified _VYNQPGHQF_ 0 0 0 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 ENSG00000214814|ENST00000522917|FER1L6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2592163085938 2 545.259248 1088.50394 -0.3404 -0.0001856 -0.26087 -0.00014224 -0.60127 -0.00032785 545.259290660273 26.071 0.23758 26.071 25.924 26.162 0 31 11 4 0 0 0 0.040683 1 13371 13371 64.236 41.5 1 6737000 74744 10510 49917 51001 87068 87068 -0.03676884876381337 VYNRAALLW 9 Unmodified _VYNRAALLW_ 0 0 0 nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENSG00000064932|ENST00000361757|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF nc|ENSG00000064932|Q9Y2G9-3|SBNO2 nc|ENSG00000064932|Q9Y2G9-3|SBNO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.3121948242188 2 553.311284 1104.60801 0.37844 0.0002094 0.1247 6.9E-05 0.50315 0.0002784 553.311365758088 61.947 0.25486 61.915 61.789 62.044 -0.032787 26 12 3 0 0 0 0.019303 1 33857 33857 64.236 37.895 1 4332500 74745 887 49918 51002 87069 87069 0.059894419511238084 VYNRLSLLL 9 Unmodified _VYNRLSLLL_ 0 0 0 ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13;ENST00000528145.5_1_11:46666897-46677909:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.8348999023438 2 545.834591 1089.65463 0.21827 0.00011914 -0.68982 -0.00037653 -0.47154 -0.00025738 545.8340554832839 73.35 0.58311 73.394 73.071 73.654 0.043983 68 26 4 0 0 0 0.05483 1 40395 40395 43.772 15.286 1 10876000 74746 8500 49919 51003 87070 87070 0.11338881782421595 VYNRLSLLL 9 Unmodified _VYNRLSLLL_ 0 0 0 ENST00000534610.5_1_11:46665841-46681092:+|nuORF;nc|ENSG00000175224|O75143-4|ATG13;nc|ENSG00000175224|O75143-3|ATG13;nc|ENSG00000175224|O75143-2|ATG13;nc|ENSG00000175224|O75143|ATG13;ENSG00000175224|ENST00000683050|ATG13;ENST00000528145.5_1_11:46666897-46677909:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF ENST00000534610.5_1_11:46665841-46681092:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.8359375 2 545.834591 1089.65463 0.93352 0.00050955 -0.43792 -0.00023903 0.4956 0.00027052 545.8343204226238 94.951 0.77309 88.775 88.315 89.089 -6.1757 91 43 3 0 0 0 0.036857 1 62725 62725 51.63 18.844 1 18597000 74747 8500 49919 51003 87071 87071 0.11338881782421595 VYNRSDLY 8 Unmodified _VYNRSDLY_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2546997070312 2 515.253631 1028.49271 0.86746 0.00044696 0.82464 0.0004249 1.6921 0.00087186 515.2541820406149 72.505 0.439 66.329 66.123 66.562 -6.1757 29 22 2 0 0 0 0.50673 1 47403 47403 34.102 5.0209 1 20083000 74748 5089 49920 51004 87072 87072 -0.020397069705268223 VYNSAVGLYW 10 Unmodified _VYNSAVGLYW_ 0 0 0 nc|ENSG00000141627|Q7RTS9|DYM;ENSG00000141627|ENST00000675505|DYM;ENST00000577734.1_1_18:46570427-46619646:-|nuORF;nc|ENSG00000141627|Q7RTS9-2|DYM nc|ENSG00000141627|Q7RTS9|DYM nc|ENSG00000141627|Q7RTS9|DYM MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.2919311523438 2 586.292756 1170.57096 0.24858 0.00014574 -1.4602 -0.00085609 -1.2116 -0.00071035 586.2920386358384 85.547 0.36171 79.371 79.168 79.53 -6.1757 29 21 2 0 0 0 0.33553 1 56453 56453 25.399 7.253 1 15988000 74749 5360 49921 51005 87073 87073 -0.007502743852910498 VYNSEYYHF 9 Unmodified _VYNSEYYHF_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.7659301757812 2 611.264196 1220.51384 0.63196 0.0003863 -0.019416 -1.1868E-05 0.61254 0.00037443 611.2641125635184 46.422 0.31119 46.422 46.274 46.585 0 47 14 4 0 0 0 0.0083087 2 25332 25332;25442 97.075 66.438 1 34675000 74750 2906 49922 51006 87074;87075 87074 -0.08759741661674525 VYNSEYYHF 9 Unmodified _VYNSEYYHF_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2652587890625 2 611.264196 1220.51384 0.68726 0.0004201 0.13702 8.3754E-05 0.82428 0.00050385 611.2642635419012 46.807 0.33395 46.47 46.29 46.624 -0.33664 58 16 7 0 0 0 0.010877 2 25016 25016;25119 77.984 58.576 1 63850000 74751 2906 49922 51006 87076;87077 87076 -0.08759741661674525 VYNSEYYHF 9 Unmodified _VYNSEYYHF_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.2655639648438 2 611.264196 1220.51384 1.3683 0.00083639 -0.20636 -0.00012614 1.1619 0.00071024 611.263996906033 46.535 0.20578 46.502 46.39 46.596 -0.033417 22 9 3 0 0 0 0.042911 1 25024 25024 48.346 37.522 1 4386600 74752 2906 49922 51006 87078 87078 -0.08759741661674525 VYNSEYYHF 9 Unmodified _VYNSEYYHF_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2646484375 2 611.264196 1220.51384 0.35435 0.0002166 0.33269 0.00020336 0.68704 0.00041996 611.2644001284324 51.936 0.4034 46.202 46.004 46.407 -5.7345 77 27 4 0 0 0 0.012148 2 32794 32647;32794 74.423 58.576 1 189080000 74753 2906 49922 51006 87079;87080 87080 -0.08759741661674525 VYNSPRGYF 9 Unmodified _VYNSPRGYF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7701416015625 2 551.769448 1101.52434 0.70835 0.00039085 -0.42868 -0.00023653 0.27967 0.00015431 551.769129677714 40.568 0.229 40.265 40.108 40.337 -0.30304 19 10 2 0 0 0 0.028475 1 21424 21424 56.177 34.43 1 3205700 74754 2413 49923 51007 87081 87081 -0.022357142165674304 VYNSPRGYF 9 Unmodified _VYNSPRGYF_ 0 0 0 ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL ENSG00000106299|ENST00000223023|WASL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.7691040039062 2 551.769448 1101.52434 0.42274 0.00023325 -1.1697 -0.00064543 -0.74701 -0.00041218 551.7686982988868 40.232 0.22781 40.237 40.088 40.316 0.0050545 16 10 2 0 0 0 0.028475 1 21426 21426 56.177 24.06 1 1155000 74755 2413 49923 51007 87082 87082 -0.022357142165674304 VYNSWKNNKF 10 Unmodified _VYNSWKNNKF_ 0 0 0 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 ENSG00000067596|ENST00000262415|DHX8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.8873901367188 3 433.887533 1298.64077 -0.023318 -1.0118E-05 -0.041646 -1.807E-05 -0.064964 -2.8187E-05 433.88768634798805 31.204 0.30681 31.234 31.084 31.391 0.030106 17 12 2 0 0 0 0.34435 1 16360 16360 24.882 21.036 1 4517000 74756 960 49924 51008 87083 87083 0.0033960428331738512 VYNTATNQWF 10 Unmodified _VYNTATNQWF_ 0 0 0 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1;nc|ENSG00000172534|P51610-2|HCFC1;nc|ENSG00000172534|P51610-3|HCFC1;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2;HCFC2|p.N486Kfs*2|1|0.18|ENSG00000111727|chr12:104093553-104093554|-/A|frameshift_variant;ENSG00000111727|ENST00000229330|HCFC2 ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000111727|Q9Y5Z7-2|HCFC2 ENSG00000172534|ENST00000310441|HCFC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2908935546875 2 622.290745 1242.56694 0.9009 0.00056062 -1.2269 -0.00076347 -0.32597 -0.00020285 622.2901288398417 71.205 0.34691 65.029 64.859 65.206 -6.1757 27 16 2 0 0 0 0.022716 1 46526 46526 96.111 73.375 1 17328000 74757 8230;2821 49925 51009 87084 87084 -0.04464363879014854 VYNTVSEGTHF 11 Unmodified _VYNTVSEGTHF_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2927856445312 2 627.293485 1252.57242 0.39685 0.00024894 0.014011 8.7888E-06 0.41086 0.00025773 627.2932144521067 36.111 0.17579 36.111 36.01 36.186 0 15 8 2 0 0 0 3.4728E-11 1 19139 19139 125.53 91.127 1 5339500 74758 5324 49926 51010 87085 87085 -0.04376685087186161 VYNTVSEGTHF 11 Unmodified _VYNTVSEGTHF_ 0 0 0 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 ENSG00000141424|ENST00000269187|SLC39A6 MSMS AL20221201_MKP_PDAC_01 4 627.2947387695312 2 627.293485 1252.57242 NaN NaN NaN NaN NaN NaN NaN 41.369 1 36.762 36.262 37.262 -4.6079 0 0 0 3.2747000000000005E-25 1 24833 24833 149.91 106.14 1 74759 5324 49926 51010 87086 87086 -0.04376685087186161 VYNWQYVHC 9 Unmodified _VYNWQYVHC_ 0 0 0 ENSG00000188976|ENST00000327044|NOC2L;ENST00000477976.5_1_1:880076-889593:-|nuORF ENSG00000188976|ENST00000327044|NOC2L ENSG00000188976|ENST00000327044|NOC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.5151977539062 3 404.514931 1210.52296 0.2348 9.498E-05 -0.29438 -0.00011908 -0.059581 -2.4101E-05 404.5148049362266 66.646 0.30899 66.163 65.964 66.273 -0.48323 34 14 3 0 0 0 0.54213 1 36365 36365 4.897 1.8247 1 2723200 74760 9710 49927 51011 87087 87087 -0.07387671576975663 VYNYAEQTL 9 Unmodified _VYNYAEQTL_ 0 0 0 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14 ENSG00000173933|ENST00000310092|RBM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7676391601562 2 550.766571 1099.51859 1.1878 0.00065422 0.60278 0.00033199 1.7906 0.00098621 550.7667471083264 53.678 0.30859 47.874 47.786 48.095 -5.8042 28 19 2 0 0 0 0.042911 1 34011 34011 48.346 24.325 1 23520000 74761 8379;16567 49928 51012 87088 87088 -0.027188575189029507 VYNYRQLEVF 10 Unmodified _VYNYRQLEVF_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 666.34521484375 2 665.843145 1329.67174 0.48202 0.00032095 0.30435 0.00020265 0.78637 0.0005236 665.8433588548254 68.403 0.28905 67.922 67.764 68.053 -0.48071 30 12 3 0 0 0 0.56675 1 37364 37364 14.838 6.6827 1 3445000 + 74762 19178 49929 51013 87089 87089 0.020087575975594518 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7817687988281 2 511.781493 1021.54843 0.28421 0.00014546 -0.49969 -0.00025573 -0.21548 -0.00011028 511.7814409851006 89.395 0.33801 89.395 89.186 89.524 0 24 17 2 0 0 0 0.39863 1 49456 49456 12.532 3.1841 1 662560 74763 4245 49930 51014 87090 87090 0.038521262170888804 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7814331054688 2 511.781493 1021.54843 0.29191 0.0001494 -0.21557 -0.00011032 0.076343 3.9071E-05 511.78131461103885 89.891 0.48969 89.389 89.149 89.639 -0.50172 66 25 3 0 0 0 0.10925 2 49158 49056;49158 32.117 16.27 1 5813600 74764 4245 49930 51014 87091;87092 87092 0.038521262170888804 VYPADVVLF 9 Unmodified _VYPADVVLF_ 0 0 0 nc|ENSG00000130717|Q9HA47-2|UCK1;ENST00000459858.1_1_9:134404461-134406630:-|nuORF;ENSG00000143179|ENST00000367879|UCK2;nc|ENSG00000130717|Q9HA47-3|UCK1;ENSG00000130717|ENST00000372215|UCK1;nc|ENSG00000130717|Q9HA47-4|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 nc|ENSG00000130717|Q9HA47-2|UCK1 MSMS AL20221201_MKP_PDAC_01 4 511.7815551757812 2 511.781493 1021.54843 NaN NaN NaN NaN NaN NaN NaN 98.696 1 92.52 92.02 93.02 -6.1757 0 0 0 0.13852 1 65507 65507 38.151 13.477 1 74765 4245 49930 51014 87093 87093 0.038521262170888804 VYPAKYSDI 9 Unmodified _VYPAKYSDI_ 0 0 0 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 ENSG00000180357|ENST00000326648|ZNF609 MSMS AL20221201_MKP_PDAC_01 4 352.8654174804688 3 352.518447 1054.53351 NaN NaN NaN NaN NaN NaN NaN 19.32 1 16.664 16.164 17.164 -2.6564 0 0 0 0.6306 1 10224 10224 11.495 1.3441 1 74766 8895 49931 51015 87094 87094 0.008426343491009902 VYPANERFWYF 11 Unmodified _VYPANERFWYF_ 0 0 0 nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 746.3598022460938 2 746.356419 1490.69829 0.36981 0.00027601 2.2796 0.0017014 2.6494 0.0019774 746.3582098251314 79.612 0.37682 79.667 79.445 79.821 0.054977 32 14 3 0 0 0 0.31454 1 43988 43988 26.021 20.289 1 2407500 74767 6160 49932 51016 87095 87095 -0.027435535111180798 VYPANERFWYF 11 Unmodified _VYPANERFWYF_ 0 0 0 nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 746.3572387695312 2 746.356419 1490.69829 1.3073 0.00097569 0.24998 0.00018657 1.5573 0.0011623 746.3568092592528 95.823 0.26405 89.647 89.521 89.785 -6.1757 22 15 2 0 0 0 0.13335 2 63422 63422;63562 38.615 29.232 1 9339200 74768 6160 49932 51016 87096;87097 87096 -0.027435535111180798 VYPARTQTL 9 Unmodified _VYPARTQTL_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7933959960938 2 524.792924 1047.57129 -0.1707 -8.9583E-05 0.33769 0.00017722 0.16699 8.7634E-05 524.7932652696212 28.754 0.21941 28.754 28.641 28.861 0 22 10 3 0 0 0 0.091924 1 14858 14858 46.021 5.5724 1 3615700 74769 10098 49933 51017 87098 87098 0.049411453345555856 VYPARTQTL 9 Unmodified _VYPARTQTL_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7930908203125 2 524.792924 1047.57129 0.48677 0.00025545 0.36863 0.00019345 0.8554 0.00044891 524.7930897437947 28.711 0.21345 28.649 28.528 28.742 -0.062159 12 8 2 0 0 0 0.076472 1 14812 14812 49.933 9.9757 1 2739700 74770 10098 49933 51017 87099 87099 0.049411453345555856 VYPARTQTL 9 Unmodified _VYPARTQTL_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7937622070312 2 524.792924 1047.57129 0.97576 0.00051207 0.24139 0.00012668 1.2172 0.00063875 524.7934902591126 32.498 0.28073 28.641 28.533 28.814 -3.8562 39 14 3 0 0 0 0.171 1 18528 18528 34.402 2.2848 1 20873000 74771 10098 49933 51017 87100 87100 0.049411453345555856 VYPARTQTL 9 Unmodified _VYPARTQTL_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 524.792924 1047.57129 0.089853 4.7154E-05 1.1042 0.00057945 1.194 0.00062661 525.2953183657098 28.564 0.13094 28.594 28.52 28.651 0.029564 -0.065893 0.00080964 NaN 49.933 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 589400 74772 10098 49933 51017 0.049411453345555856 VYPARTQTL 9 Unmodified _VYPARTQTL_ 0 0 0 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 ENSG00000198502|ENST00000374975|HLA-DRB5 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 524.792924 1047.57129 0.97576 0.00051207 0.24139 0.00012668 1.2172 0.00063875 524.7934902591126 32.498 0.28073 28.641 28.533 28.814 -3.8562 -0.01806 -9.5896E-05 NaN 49.933 39 14 3 NaN NaN NaN NaN 0 NaN NaN 0 20873000 74773 10098 49933 51017 0.049411453345555856 VYPASKMFPFI 11 Unmodified _VYPASKMFPFI_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.3463745117188 2 650.343935 1298.67332 0.87397 0.00056838 -0.21049 -0.00013689 0.66348 0.00043149 650.3440198824223 99.234 0.072853 93.058 93.009 93.081 -6.1757 6 3 2 0 0 0 0.019459 1 66026 66026 57.722 17.772 1 32976000 74774 8497 49934 51018 87101 87101 0.035926753619605734 VYPASKMFPFI 11 Unmodified _VYPASKMFPFI_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 650.343935 1298.67332 0.33134 0.00021549 -3.0241 -0.0019667 -2.6927 -0.0017512 650.342919909994 93.567 0.17484 93.109 93.023 93.198 -0.4574 0.025504 -0.0018841 NaN 57.722 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 224930 74775 8497 49934 51018 0.035926753619605734 VYPASPSSWLI 11 Unmodified _VYPASPSSWLI_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.323486328125 2 610.321514 1218.62847 0.57109 0.00034855 1.5684 0.00095724 2.1395 0.0013058 610.3219361063104 99.125 0.16729 92.949 92.841 93.009 -6.1757 19 9 3 0 0 0 0.18636 1 65916 65916 32.786 18.88 1 51767000 74776 2701 49935 51019 87102 87102 0.027905678202841955 VYPASYRF 8 Unmodified _VYPASYRF_ 0 0 0 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 ENSG00000167513|ENST00000301019|CDT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7557067871094 2 501.75581 1001.49707 0.76582 0.00038425 -0.72853 -0.00036554 0.037289 1.871E-05 501.7555471260402 48.937 0.34594 43.541 43.371 43.717 -5.3961 34 21 2 0 0 0 0.44629 1 30505 30505 39.957 7.8404 1 38097000 74777 7618 49936 51020 87103 87103 -0.0036219775696508805 VYPAVMVLL 9 Oxidation (M) _VYPAVM(Oxidation (M))VLL_ VYPAVM(1)VLL VYPAVM(56)VLL 0 0 1 ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 ENSG00000105983|ENST00000353442|LMBR1 ENSG00000105983|ENST00000353442|LMBR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.7945251464844 2 510.793546 1019.57254 NaN NaN NaN NaN NaN NaN NaN 85.356 1 85.417 84.917 85.917 0.061638 0 0 0 0.053568 1 47251 47251 56.048 27.875 1 74778 2386 49937 51021 87104 87104 410 0.06353643379111418 VYPAVMVLL 9 Unmodified _VYPAVMVLL_ 0 0 0 ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1 ENSG00000105983|ENST00000353442|LMBR1 ENSG00000105983|ENST00000353442|LMBR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.796142578125 2 502.796089 1003.57763 1.0005 0.00050304 -0.28575 -0.00014367 0.71474 0.00035937 502.79589182076586 101.36 0.14534 95.18 95.107 95.252 -6.1757 17 7 3 0 0 0 0.085487 1 67989 67989 36.466 13.318 1 110360000 74779 2386 49937 51022 87105 87105 0.07597947241731617 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.197509765625 3 357.197819 1068.57163 -1.135 -0.0004054 -0.07704 -2.7518E-05 -1.212 -0.00043292 357.1977927100223 32.628 0.39871 32.628 32.472 32.87 0 80 21 5 0 0 0 0.040683 2 17108 17000;17108 49.554 25.765 1 619570000 74780 9729 49938 51023 87106;87107 87107 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2929077148438 2 535.293091 1068.57163 -0.94629 -0.00050654 -0.59471 -0.00031834 -1.541 -0.00082488 535.2929277149907 32.628 0.27682 32.628 32.513 32.79 0 52 14 5 0 0 0 0.085319 1 17053 17053 39.957 18.211 1 108860000 74781 9729 49938 51023 87108 87108 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.1978759765625 3 357.197819 1068.57163 -0.26974 -9.6351E-05 0.31165 0.00011132 0.041911 1.4971E-05 357.197961429882 32.738 0.4701 32.582 32.343 32.813 -0.15612 75 19 6 0 0 0 0.017075 2 17100 16994;17100 66.457 52.842 1 394900000 74782 9729 49938 51023 87109;87110 87110 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2930908203125 2 535.293091 1068.57163 -0.30528 -0.00016342 0.55128 0.0002951 0.246 0.00013168 535.293393467569 32.767 0.35481 32.607 32.407 32.762 -0.15918 45 14 4 0 0 0 0.033587 2 17023 17023;17126 58.679 34.005 1 67336000 74783 9729 49938 51023 87111;87112 87111 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.1978759765625 3 357.197819 1068.57163 -0.20155 -7.1993E-05 1.0734 0.0003834 0.87181 0.00031141 357.1979312977615 32.567 0.59132 32.597 32.151 32.742 0.029743 49 24 4 0 0 0 0.017075 1 17081 17081 66.457 36.616 1 25898000 74784 9729 49938 51023 87113 87113 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2913818359375 2 535.293091 1068.57163 -0.098271 -5.2604E-05 0.13931 7.4569E-05 0.041035 2.1966E-05 535.2931125281303 32.575 0.23159 32.605 32.466 32.698 0.029743 14 8 2 0 0 0 0.069655 1 17090 17090 36.127 17.992 1 3629700 74785 9729 49938 51023 87114 87114 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2940063476562 2 535.293091 1068.57163 0.53319 0.00028541 -0.21529 -0.00011524 0.3179 0.00017017 535.2929709542354 36.58 0.65827 32.296 31.991 32.65 -4.2835 145 40 5 0 0 0 0.0082981 4 21218 21192;21218;21342;21466 118.89 74.488 1 692920000 74786 9729 49938 51023 87115;87116;87117;87118 87116 0.04008565054414248 VYPDGIRHI 9 Unmodified _VYPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.1982727050781 3 357.197819 1068.57163 1.2993 0.00046411 -0.81355 -0.0002906 0.48576 0.00017351 357.1974441865537 36.586 0.94566 32.302 31.962 32.908 -4.2835 227 58 6 0 0 0 0.017075 3 21308 21308;21432;21556 66.457 42.667 1 2709700000 74787 9729 49938 51023 87119;87120;87121 87119 0.04008565054414248 VYPDSTGGMDL 11 Unmodified _VYPDSTGGMDL_ 0 0 0 REV__ENSG00000067715|ENST00000261205|SYT1 REV__ENSG00000067715|ENST00000261205|SYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.8403625488281 3 385.50599 1153.49614 0.71647 0.0002762 -2.869 -0.001106 -2.1526 -0.00082983 385.505937479708 74.054 0.32463 73.578 73.469 73.794 -0.47588 44 13 5 0 0 0 0.70701 1 40539 40539 1.4551 0 1 2661400 + 74788 17424 49939 51024 87122 87122 -0.0744682497879694 VYPDTVALTF 10 Unmodified _VYPDTVALTF_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000589953.1_1_19:36562547-36565998:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2936401367188 2 563.294965 1124.57538 1.0967 0.00061779 1.3112 0.00073856 2.4079 0.0013564 563.2954339720657 80.235 0.32285 79.746 79.587 79.91 -0.48932 25 12 3 0 0 0 0.50944 1 43936 43936 15.847 0 1 2556400 74789 1167 49940 51025 87123 87123 0.018071900376071426 VYPDTVALTF 10 Unmodified _VYPDTVALTF_ 0 0 0 nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62;nc|ENSG00000075702|O43379-3|WDR62;ENST00000378860.8_1_19:36545867-36564559:+|nuORF;nc|ENSG00000075702|O43379-2|WDR62;ENST00000589953.1_1_19:36562547-36565998:+|nuORF nc|ENSG00000075702|O43379|WDR62 nc|ENSG00000075702|O43379|WDR62 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.296875 2 563.294965 1124.57538 1.2496 0.00070389 1.9514 0.0010992 3.201 0.0018031 563.2963836401256 87.601 0.45333 81.425 81.182 81.636 -6.1757 47 24 3 0 0 0 0.2178 1 57757 57757 32.305 13.049 1 21642000 74790 1167 49940 51025 87124 87124 0.018071900376071426 VYPEEHSRW 9 Unmodified _VYPEEHSRW_ 0 0 0 nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.5237121582031 3 401.524484 1201.55162 -0.57782 -0.00023201 0.84394 0.00033886 0.26612 0.00010686 401.52454513069125 26.434 0.36314 26.434 26.208 26.571 0 50 17 4 0 0 0 0.1685 2 13536 13536;13639 24.882 14.731 1 11760000 74791 3327 49941 51026 87125;87126 87125 -0.04109230676203879 VYPEEHSRW 9 Unmodified _VYPEEHSRW_ 0 0 0 nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 nc|ENSG00000117616|Q9BUV0-3|RSRP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.52490234375 3 401.524484 1201.55162 0.78933 0.00031694 -0.037979 -1.5249E-05 0.75135 0.00030169 401.8586377160053 29.161 0.10483 25.86 25.815 25.92 -3.3016 9 6 2 0 0 0 0.0090524 1 16349 16349 69.338 44.457 1 52692000 74792 3327 49941 51026 87127 87127 -0.04109230676203879 VYPEESLVI 9 Unmodified _VYPEESLVI_ 0 0 0 ENSG00000196419|ENST00000360079|XRCC6;nc|ENSG00000196419|P12956-2|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 ENSG00000196419|ENST00000360079|XRCC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7827758789062 2 524.78169 1047.54883 0.75094 0.00039408 0.079059 4.1488E-05 0.83 0.00043557 524.7817963412323 77.56 0.58477 71.385 71.1 71.684 -6.1757 95 33 4 0 0 0 0.14 3 50599 50599;50715;50833 38.151 9.6643 1 75292000 74793 9816 49942 51027 87128;87129;87130 87128 0.026955011462860057 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2292785644531 3 399.228897 1194.66486 0.033277 1.3285E-05 -0.039769 -1.5877E-05 -0.0064926 -2.592E-06 399.22889134699744 39.689 0.29956 39.689 39.553 39.853 0 34 14 3 0 0 0 0.22237 1 21286 21286 28.181 10.318 1 4847100 74794 4858 49943 51028 87131 87131 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.2287902832031 3 399.228897 1194.66486 0.29043 0.00011595 -0.16741 -6.6836E-05 0.12302 4.9112E-05 399.2287989541868 40.071 0.45994 39.774 39.548 40.008 -0.29716 63 21 4 0 0 0 0.16005 2 21203 21104;21203 33.821 15.958 1 76335000 74795 4858 49943 51028 87132;87133 87133 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3397216796875 2 598.339707 1194.66486 0.30408 0.00018194 -0.16909 -0.00010117 0.13499 8.0769E-05 598.339463961727 40.069 0.33185 39.772 39.592 39.923 -0.29716 49 15 4 0 0 0 0.052718 2 21118 21118;21225 57.249 27.409 1 31057000 74796 4858 49943 51028 87134;87135 87134 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.228759765625 3 399.228897 1194.66486 0.15546 6.2063E-05 0.55719 0.00022245 0.71265 0.00028451 399.22914267361097 39.714 0.39297 39.719 39.522 39.915 0.0050583 60 18 4 0 0 0 0.10406 2 21100 21100;21196 46.475 28.612 1 24117000 74797 4858 49943 51028 87136;87137 87136 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3399658203125 2 598.339707 1194.66486 0.18651 0.0001116 0.50084 0.00029967 0.68735 0.00041127 598.3400317316582 39.734 0.30909 39.739 39.543 39.852 0.0050545 43 14 4 0 0 0 0.087164 2 21113 21113;21218 49.527 23.259 1 11173000 74798 4858 49943 51028 87138;87139 87138 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3397827148438 2 598.339707 1194.66486 0.02064 1.235E-05 0.34541 0.00020667 0.36605 0.00021902 598.3398634269001 44.313 0.52906 39.461 39.172 39.701 -4.852 121 37 4 0 0 0 0.022716 3 26896 26896;27027;27163 73.196 40.411 1 169110000 74799 4858 49943 51028 87140;87141;87142 87140 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2293090820312 3 399.228897 1194.66486 0.67237 0.00026843 0.343 0.00013693 1.0154 0.00040536 399.228982016495 44.316 0.61193 39.464 39.147 39.759 -4.852 156 43 5 0 0 0 0.10406 2 27120 26977;27120 33.821 20.303 1 407760000 74800 4858 49943 51028 87143;87144 87144 0.07531444716960323 VYPEKLATKF 10 Unmodified _VYPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 598.339707 1194.66486 0.018278 1.0937E-05 -0.13038 -7.8011E-05 -0.1121 -6.7075E-05 598.3398023309975 39.672 0.19715 39.672 39.595 39.792 0 0.011188 -0.00045331 NaN 73.196 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1809400 74801 4858 49943 51028 0.07531444716960323 VYPERTPLL 9 Unmodified _VYPERTPLL_ 0 0 0 ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32782088-32784728:-|nuORF ENSG00000241106|ENST00000438763|HLA-DOB ENSG00000241106|ENST00000438763|HLA-DOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3121337890625 2 544.310949 1086.60735 0.61928 0.00033708 0.16834 9.1631E-05 0.78763 0.00042871 544.3110503629217 49.697 0.3726 49.697 49.487 49.859 0 38 16 3 0 0 0 0.036857 1 27337 27337 51.63 20.993 1 8566300 74802 10679 49944 51029 87145 87145 0.06750602511442594 VYPERTPLL 9 Unmodified _VYPERTPLL_ 0 0 0 ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32782088-32784728:-|nuORF ENSG00000241106|ENST00000438763|HLA-DOB ENSG00000241106|ENST00000438763|HLA-DOB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.310791015625 2 544.310949 1086.60735 0.59613 0.00032448 0.54001 0.00029393 1.1361 0.00061842 544.3110688201051 50.064 0.52078 49.672 49.451 49.971 -0.3923 63 25 4 0 0 0 0.044011 2 26879 26879;26988 47.749 15.443 1 22532000 74803 10679 49944 51029 87146;87147 87146 0.06750602511442594 VYPERTPLL 9 Unmodified _VYPERTPLL_ 0 0 0 ENSG00000241106|ENST00000438763|HLA-DOB;ENST00000475235.1_1_6:32782088-32784728:-|nuORF ENSG00000241106|ENST00000438763|HLA-DOB ENSG00000241106|ENST00000438763|HLA-DOB MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3113403320312 2 544.310949 1086.60735 1.0401 0.00056613 -0.24977 -0.00013595 0.79032 0.00043018 544.3107104202995 55.315 0.54067 49.394 49.113 49.653 -5.9211 84 33 3 0 0 0 0.05447 3 35199 35063;35199;35336 43.858 16.939 1 98858000 74804 10679 49944 51029 87148;87149;87150 87149 0.06750602511442594 VYPESFREL 9 Unmodified _VYPESFREL_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.29052734375 2 570.290214 1138.56587 0.41087 0.00023431 0.53468 0.00030492 0.94555 0.00053924 570.2908730558222 50.498 0.25332 50.498 50.389 50.643 0 21 11 2 0 0 0 0.10247 1 27843 27843 32.786 0.66872 1 3053000 74805 393 49945 51030 87151 87151 0.002134217521188475 VYPESFREL 9 Unmodified _VYPESFREL_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2903442382812 2 570.290214 1138.56587 0.80817 0.00046089 -1.3571 -0.00077394 -0.54892 -0.00031305 570.2894830495383 56.372 0.27486 50.395 50.286 50.561 -5.9769 22 15 2 0 0 0 0.029718 1 36017 36017 55.503 21.101 1 13843000 74806 393 49945 51030 87152 87152 0.002134217521188475 VYPESFREL 9 Unmodified _VYPESFREL_ 0 0 0 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 ENSG00000008513|ENST00000522652|ST3GAL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 570.290214 1138.56587 0.40016 0.00022821 -0.13102 -7.4719E-05 0.26914 0.00015349 570.2900396992103 51.06 0.2406 50.646 50.518 50.758 -0.41351 0.13327 0.0001376 NaN 55.503 21 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1342800 74807 393 49945 51030 0.002134217521188475 VYPESIPRKF 10 Unmodified _VYPESIPRKF_ 0 0 0 nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX nc|ENSG00000147231|Q6NSI4-3|RADX nc|ENSG00000147231|Q6NSI4-3|RADX MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8980712890625 3 412.564279 1234.67101 0.81449 0.00033603 0.71723 0.0002959 1.5317 0.00063193 412.5647356486911 44.424 0.17458 39.572 39.439 39.614 -4.852 18 12 2 0 0 0 0.086206 1 27126 27126 49.742 36.869 1 10720000 74808 5836 49946 51031 87153 87153 0.06305962948522392 VYPESIPRKF 10 Unmodified _VYPESIPRKF_ 0 0 0 nc|ENSG00000147231|Q6NSI4-3|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX nc|ENSG00000147231|Q6NSI4-3|RADX nc|ENSG00000147231|Q6NSI4-3|RADX MSMS AL20221201_MKP_PDAC_01 4 412.5650329589844 3 412.564279 1234.67101 NaN NaN NaN NaN NaN NaN NaN 44.468 1 39.616 39.116 40.116 -4.852 0 0 0 0.57148 1 27155 27155 22.775 14.331 1 74809 5836 49946 51031 87154 87154 0.06305962948522392 VYPEYVIQY 9 Unmodified _VYPEYVIQY_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2952880859375 2 587.294965 1172.57538 0.13777 8.0913E-05 0.15452 9.0749E-05 0.29229 0.00017166 587.2949896239646 66.031 0.64426 66.031 65.572 66.216 0 98 31 4 0 0 0 0.095405 2 36887 36774;36887 34.102 15.967 1 29640000 74810 814 49947 51032 87155;87156 87156 -0.00400809962366111 VYPEYVIQY 9 Unmodified _VYPEYVIQY_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2952880859375 2 587.294965 1172.57538 0.1516 8.9036E-05 0.45184 0.00026536 0.60344 0.0003544 587.2951120648977 66.625 0.37008 66.142 65.984 66.355 -0.48323 65 17 5 0 0 0 0.070838 2 36424 36318;36424 39.957 27.426 1 47049000 74811 814 49947 51032 87157;87158 87158 -0.00400809962366111 VYPEYVIQY 9 Unmodified _VYPEYVIQY_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2955932617188 2 587.294965 1172.57538 1.1544 0.00067799 -0.37882 -0.00022248 0.77561 0.00045551 587.2947881501467 66.145 0.5101 66.154 65.791 66.301 0.0095673 39 25 2 0 0 0 0.095405 1 36272 36272 34.102 18.255 1 5693000 74812 814 49947 51032 87159 87159 -0.00400809962366111 VYPEYVIQY 9 Unmodified _VYPEYVIQY_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7966918945312 2 587.294965 1172.57538 0.75804 0.0004452 0.30098 0.00017677 1.059 0.00062196 587.2950113549891 73.029 0.64234 66.853 66.542 67.184 -6.1757 102 31 5 0 0 0 0.013472 3 47637 47637;47761;47881 70.716 36.369 1 222650000 74813 814 49947 51032 87160;87161;87162 87160 -0.00400809962366111 VYPEYVIQY 9 Unmodified _VYPEYVIQY_ 0 0 0 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 ENSG00000059378|ENST00000263549|PARP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1174.136962890625 1 1173.58265 1172.57538 0.74678 0.0008764 -0.42357 -0.00049709 0.32321 0.00037931 1173.580803984246 72.999 0.45101 66.824 66.562 67.013 -6.1757 35 22 2 0 0 0 0.00012323 1 47643 47643 152.41 67.14 1 22452000 74814 814 49947 51032 87163 87163 -0.00400809962366111 VYPFENFEF 9 Unmodified _VYPFENFEF_ 0 0 0 nc|ENSG00000116885|Q8WVF1-4|OSCP1 nc|ENSG00000116885|Q8WVF1-4|OSCP1 nc|ENSG00000116885|Q8WVF1-4|OSCP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.2703857421875 2 596.27149 1190.52843 NaN NaN NaN NaN NaN NaN NaN 96.013 1 95.708 95.208 96.208 -0.30472 0 0 0 0.84369 1 52438 52438 2.3027 0.4585 1 74815 16147 49948 51033 87164 87164 -0.05921669513531924 VYPFPTFQPAF 11 Unmodified _VYPFPTFQPAF_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.3341674804688 2 657.331882 1312.64921 4.4102 0.002899 -0.86599 -0.00056925 3.5442 0.0023297 657.3311074140602 98.753 0.24572 98.724 98.559 98.804 -0.028282 20 8 3 0 0 0 0.28407 1 54859 54859 27.629 11.782 1 4143000 74816 4368 49949 51034 87165 87165 0.005391581999219852 VYPFPTFQPAF 11 Unmodified _VYPFPTFQPAF_ 0 0 0 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 ENSG00000132017|ENST00000254337|DCAF15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 657.3294677734375 2 657.331882 1312.64921 0.40827 0.00026837 0.16073 0.00010565 0.569 0.00037402 657.3316139986367 100.59 0.14297 94.411 94.33 94.472 -6.1757 22 9 3 0 0 0 5.7099E-11 1 67267 67267 122.18 89.394 1 56710000 74817 4368 49949 51034 87166 87166 0.005391581999219852 VYPGDPLRF 9 Unmodified _VYPGDPLRF_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2809448242188 2 532.282192 1062.54983 0.67223 0.00035781 -0.7611 -0.00040512 -0.088872 -4.7305E-05 532.2816437169569 60.018 0.45759 60.018 59.796 60.254 0 64 20 4 0 0 0 0.032796 2 33406 33406;33518 53.833 33.379 1 17942000 74818 8039 49950 51035 87167;87168 87167 0.021057603058579843 VYPGDPLRF 9 Unmodified _VYPGDPLRF_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2823486328125 2 532.282192 1062.54983 -0.10565 -5.6235E-05 -0.013134 -6.9912E-06 -0.11878 -6.3226E-05 532.2821430922306 60.508 0.60486 60.019 59.748 60.353 -0.48932 113 29 5 0 0 0 0.05447 3 33075 32874;32975;33075 43.858 29.952 1 347330000 74819 8039 49950 51035 87169;87170;87171 87171 0.021057603058579843 VYPGDPLRF 9 Unmodified _VYPGDPLRF_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2828979492188 2 532.282192 1062.54983 0.31907 0.00016983 -0.43249 -0.00023021 -0.11343 -6.0375E-05 532.2817526303782 60.128 0.38359 60.075 59.897 60.28 -0.053062 70 20 4 0 0 0 0.047788 2 32724 32724;32824 45.7 27.565 1 43333000 74820 8039 49950 51035 87172;87173 87172 0.021057603058579843 VYPGDPLRF 9 Unmodified _VYPGDPLRF_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2821044921875 2 532.282192 1062.54983 0.70348 0.00037445 -0.58753 -0.00031273 0.11595 6.1716E-05 532.2819155007459 66.003 0.95094 59.827 59.398 60.349 -6.1757 167 55 4 0 0 0 0.039985 4 42812 42681;42812;42943;43082 49.933 36.027 1 1131600000 74821 8039 49950 51035 87174;87175;87176;87177 87175 0.021057603058579843 VYPGLAVFF 9 Unmodified _VYPGLAVFF_ 0 0 0 ENST00000442441.5_1_21:34823127-34828329:-|nuORF;ENSG00000142188|ENST00000542230|TMEM50B ENST00000442441.5_1_21:34823127-34828329:-|nuORF ENST00000442441.5_1_21:34823127-34828329:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7788391113281 2 506.778754 1011.54295 0.8628 0.00043725 -0.12322 -6.2445E-05 0.73958 0.0003748 506.77860199892285 101.36 0.22342 95.184 95.107 95.33 -6.1757 28 11 4 0 0 0 0.047696 1 67981 67981 45.75 0 1 202390000 74822 5398 49951 51036 87178 87178 0.037644474252715554 VYPGYYFTF 9 Unmodified _VYPGYYFTF_ 0 0 0 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1;ENSG00000172197|ENST00000324607|MBOAT1 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1 nc|ENSG00000172197|Q6ZNC8-2|MBOAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.7703857421875 2 578.771126 1155.5277 0.85411 0.00049433 -0.86139 -0.00049855 -0.0072858 -4.2168E-06 578.7705152092561 90.293 0.28116 90.335 90.243 90.524 0.042175 23 9 3 0 0 0 0.08691 1 50260 50260 49.669 34.831 1 8691600 74823 8190 49952 51037 87179 87179 -0.043844641625810254 VYPHPGTWESF 11 Unmodified _VYPHPGTWESF_ 0 0 0 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.3054809570312 2 660.306395 1318.59824 -0.26401 -0.00017433 0.20126 0.00013289 -0.062751 -4.1435E-05 660.3065888311114 56.732 0.25422 56.246 56.136 56.39 -0.48554 27 12 3 0 0 0 0.014934 1 30806 30806 62.573 49.53 1 4338900 74824 9920 49953 51038 87180 87180 -0.04831790844900752 VYPHPGTWESF 11 Unmodified _VYPHPGTWESF_ 0 0 0 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 660.3060302734375 2 660.306395 1318.59824 0.31113 0.00020544 -1.1172 -0.00073767 -0.80603 -0.00053223 660.3052505286767 56.432 0.18899 56.363 56.23 56.419 -0.068741 13 9 2 0 0 0 0.25654 1 30723 30723 29.082 21.792 1 3151100 74825 9920 49953 51038 87181 87181 -0.04831790844900752 VYPHPGTWESF 11 Unmodified _VYPHPGTWESF_ 0 0 0 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 ENSG00000197165|ENST00000335715|SULT1A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.3070678710938 2 660.306395 1318.59824 0.55437 0.00036605 0.2502 0.00016521 0.80457 0.00053126 660.3064401216989 62.307 0.73295 56.132 55.875 56.608 -6.1757 57 39 2 0 0 0 8.1918E-15 2 40215 40081;40215 131.27 106.28 1 28016000 74826 9920 49953 51038 87182;87183 87183 -0.04831790844900752 VYPINWIW 8 Unmodified _VYPINWIW_ 0 0 0 REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 364.1963195800781 3 364.195527 1089.56475 NaN NaN NaN NaN NaN NaN NaN 85.403 1 79.227 78.727 79.727 -6.1757 0 0 0 0.97348 1 56246 56246 3.9444 0.3479 1 + 74827 17202 49954 51039 87184 87184 0.0235525217385657 VYPIRLHPL 9 Unmodified _VYPIRLHPL_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.8940734863281 3 369.89396 1106.66005 -0.18291 -6.7659E-05 0.77025 0.00028491 0.58734 0.00021725 369.89420096655766 51.278 0.45749 51.224 50.963 51.421 -0.053871 64 22 4 0 0 0 0.34134 1 27676 27676 15.248 3.0078 1 13111000 74828 16025;667 49955 51040 87185 87185 0.11098605364873038 VYPIRLHPL 9 Unmodified _VYPIRLHPL_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.3375244140625 2 554.337301 1106.66005 NaN NaN NaN NaN NaN NaN NaN 51.244 1 51.19 50.69 51.69 -0.053871 0 0 0 0.61214 1 27727 27727 12.532 5.8084 1 74829 16025;667 49955 51040 87186 87186 0.11098605364873038 VYPKEGTHIKK 11 Unmodified _VYPKEGTHIKK_ 0 0 0 REV__nc|ENSG00000184635|P35789-3|ZNF93 REV__nc|ENSG00000184635|P35789-3|ZNF93 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.3765258789062 2 650.374612 1298.73467 1.514 0.00098467 0.10695 6.9557E-05 1.6209 0.0010542 650.3747921787455 81.314 0.29008 81.374 81.19 81.48 0.059929 22 10 3 0 0 0 0.60536 1 44964 44964 18.373 8.99 1 2981900 + 74830 23433 49956 51041 87187 87187 0.09725323385578122 VYPKKELPFF 10 Unmodified _VYPKKELPFF_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;ENST00000464020.1_1_7:116859112-116863031:+|nuORF nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.2420043945312 3 423.241025 1266.70125 0.27529 0.00011652 -1.3883 -0.0005876 -1.113 -0.00047109 423.24027708335944 59.617 0.31413 59.564 59.38 59.694 -0.053062 25 15 2 0 0 0 0.51153 1 32497 32497 15.739 10.442 1 5191800 74831 289 49957 51042 87188 87188 0.07856321613689943 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.3045654296875 2 595.301736 1188.58892 0.16322 9.7167E-05 2.2929 0.001365 2.4562 0.0014622 595.303467778123 69.24 0.34312 68.759 68.506 68.849 -0.48071 30 14 3 0 0 0 0.20428 1 37842 37842 22.736 10.205 1 2197300 74832 1757 49958 51043 87189 87189 0.0021672454518011364 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.28564453125 2 595.301736 1188.58892 0.0056686 3.3745E-06 2.2842 0.0013598 2.2899 0.0013632 595.3033384984074 69.541 0.27355 69.061 68.949 69.223 -0.47903 26 11 3 0 0 0 0.20428 2 38003 38003;38013 22.736 10.205 1 2241900 74833 1757 49958 51043 87190;87191 87190 0.0021672454518011364 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3023071289062 2 595.301736 1188.58892 0.51456 0.00030632 0.34958 0.00020811 0.86414 0.00051442 595.3020337934541 80.838 1.7838 74.662 73.893 75.677 -6.1757 341 101 4 0 0 0 0.07087 9 52743 52614;52743;52872;52997;53121;53253;53372;53494;53619 39.95 21.87 1 122930000 74834 1757 49958 51043 87192;87193;87194;87195;87196;87197;87198;87199;87200 87193 0.0021672454518011364 VYPLMKEYF 9 Unmodified _VYPLMKEYF_ 0 0 0 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MSMS AL20221201_MKP_PDAC_01 4 595.3031005859375 2 595.301736 1188.58892 NaN NaN NaN NaN NaN NaN NaN 81.855 1 75.679 75.179 76.179 -6.1757 0 0 0 0.15549 1 53747 53747 36.127 12.106 1 74835 1757 49958 51043 87201 87201 0.0021672454518011364 VYPLMKEYF 9 Oxidation (M) _VYPLM(Oxidation (M))KEYF_ VYPLM(1)KEYF VYPLM(48)KEYF 0 0 1 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 ENSG00000100109|ENST00000407690|TFIP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.8002319335938 2 603.299193 1204.58383 0.57158 0.00034484 0.020189 1.218E-05 0.59177 0.00035702 603.2993977022694 60.98 0.38557 54.833 54.63 55.015 -6.1478 69 20 4 0 0 0 0.044296 1 39158 39158 47.594 27.141 1 249550000 74836 1757 49958 51044 87202 87202 298 -0.010275793174287173 VYPLRVNCN 9 Unmodified _VYPLRVNCN_ 0 0 0 REV__ENSG00000172016|ENST00000305165|REG3A REV__ENSG00000172016|ENST00000305165|REG3A MSMS AL20221201_MKP_PDAC_01 4 359.8540649414062 3 359.855176 1076.5437 NaN NaN NaN NaN NaN NaN NaN 22.682 1 19.903 19.403 20.403 -2.7784 0 0 0 0.6306 1 12213 12213 11.495 0 1 + 74837 22623 49959 51045 87203 87203 0.008489188026715055 VYPLYTIVF 9 Unmodified _VYPLYTIVF_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8131713867188 2 557.812793 1113.61103 1.4613 0.00081513 0.10007 5.5819E-05 1.5614 0.00087095 557.812573677864 100.5 0.19411 100.46 100.31 100.51 -0.04216 13 6 4 0 0 0 0.058206 1 55841 55841 42.968 18.294 1 8942900 74838 718 49960 51046 87204 87204 0.05877272285283652 VYPLYTIVFI 10 Unmodified _VYPLYTIVFI_ 0 0 0 nc|ENSG00000050130|Q9P055-3|JKAMP;ENSG00000050130|ENST00000616435|JKAMP;nc|ENSG00000050130|Q9P055-5|JKAMP;nc|ENSG00000050130|Q9P055-2|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP nc|ENSG00000050130|Q9P055-3|JKAMP MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.357666015625 2 614.354825 1226.6951 0.78623 0.00048302 2.1499 0.0013208 2.9361 0.0018038 614.3558300245328 102.18 0.11218 96.003 95.939 96.052 -6.1757 10 4 3 0 0 0 0.069105 1 68578 68578 53.576 22.939 1 12168000 74839 718 49961 51047 87205 87205 0.09081803382196085 VYPNSFFRY 9 Unmodified _VYPNSFFRY_ 0 0 0 nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1 nc|ENSG00000116151|Q5T089-2|MORN1 nc|ENSG00000116151|Q5T089-2|MORN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.79296875 2 596.792924 1191.57129 NaN NaN NaN NaN NaN NaN NaN 61.199 1 61.155 60.655 61.655 -0.04351 0 0 0 0.10415 1 33393 33393 53.833 30.043 1 74840 3199 49962 51048 87206 87206 -0.016828546654323873 VYPNSFFRY 9 Unmodified _VYPNSFFRY_ 0 0 0 nc|ENSG00000116151|Q5T089-2|MORN1;ENSG00000116151|ENST00000378531|MORN1 nc|ENSG00000116151|Q5T089-2|MORN1 nc|ENSG00000116151|Q5T089-2|MORN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.7904663085938 2 596.792924 1191.57129 0.081043 4.8366E-05 1.1573 0.00069068 1.2384 0.00073905 596.7938024790094 66.582 0.56429 60.407 60.117 60.681 -6.1757 40 31 2 0 0 0 0.012228 1 43247 43247 92.491 58.09 1 16065000 74841 3199 49962 51048 87207 87207 -0.016828546654323873 VYPNSIQEY 9 Unmodified _VYPNSIQEY_ 0 0 0 ENST00000447781.2_1_1:153352465-153352621:-|nuORF ENST00000447781.2_1_1:153352465-153352621:-|nuORF ENST00000447781.2_1_1:153352465-153352621:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7655029296875 2 556.766571 1111.51859 0.20422 0.00011371 -3.0281 -0.0016859 -2.8239 -0.0015722 556.7646407654714 31.671 0.15913 31.671 31.561 31.72 0 12 7 3 0 0 0 0.53666 1 16527 16527 5.2307 1.6342 1 823080 74842 13484 49963 51049 87208 87208 -0.03270857518896264 VYPNWAIGL 9 Unmodified _VYPNWAIGL_ 0 0 0 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7802124023438 2 516.779285 1031.54402 1.2519 0.00064698 -0.22317 -0.00011533 1.0288 0.00053164 516.7795144693567 95.443 1.2145 89.268 88.73 89.944 -6.1757 150 71 3 0 0 0 0.068777 5 63191 62958;63073;63191;63319;63444 40.449 19.995 1 42469000 74843 4321 49964 51050 87209;87210;87211;87212;87213 87211 0.02950661794170628 VYPPFLFFL 9 Unmodified _VYPPFLFFL_ 0 0 0 ENSG00000143198|ENST00000367889|MGST3;ENST00000477450.1_1_1:165619084-165623023:+|nuORF ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MSMS AL20221201_MKP_PDAC_01 4 571.8193969726562 2 571.817879 1141.6212 NaN NaN NaN NaN NaN NaN NaN 103 1 96.826 96.326 97.326 -6.1757 0 0 0 0.15264 1 69089 69089 36.466 14.719 1 74844 5476 49965 51051 87214 87214 0.05605880010534747 VYPPGGQPLL 10 Unmodified _VYPPGGQPLL_ 0 0 0 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7916870117188 2 520.792392 1039.57023 -0.38946 -0.00020283 0.4724 0.00024602 0.082939 4.3194E-05 520.7925673607232 61.082 0.63514 60.592 60.374 61.009 -0.48932 52 30 2 0 0 0 0.14917 3 33330 33228;33330;33435 39.957 16.809 1 6268800 74845 2554 49966 51052 87215;87216;87217 87216 0.05202930965674568 VYPPGGQPLL 10 Unmodified _VYPPGGQPLL_ 0 0 0 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 ENSG00000108256|ENST00000225388|NUFIP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 520.792392 1039.57023 0.72947 0.0003799 -0.13179 -6.8637E-05 0.59768 0.00031127 520.7923547117024 60.574 0.41188 60.574 60.451 60.863 0 -0.0093457 -0.0004733 NaN 39.957 26 17 2 NaN NaN NaN NaN 0 NaN NaN 0 476680 74846 2554 49966 51052 0.05202930965674568 VYPPGIDLI 9 Unmodified _VYPPGIDLI_ 0 0 0 ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C ENSG00000151240|ENST00000280886|DIP2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7815246582031 2 493.781493 985.548434 0.69829 0.0003448 -0.055807 -2.7556E-05 0.64248 0.00031724 493.781450538294 84.465 0.42796 83.966 83.729 84.157 -0.49962 32 19 2 0 0 0 0.095049 2 46260 46159;46260 34.187 13.316 1 1129600 74847 6100 49967 51053 87218;87219 87219 0.055081262171029266 VYPPHSHSI 9 Unmodified _VYPPHSHSI_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7650146484375 2 518.764166 1035.51378 0.80861 0.00041948 0.40783 0.00021157 1.2164 0.00063104 518.7643850888539 22.223 0.33019 19.489 19.307 19.638 -2.7348 48 17 4 0 0 0 0.016184 2 11901 11901;12005 67.344 37.119 1 12086000 74848 7545;15223 49968 51054 87220;87221 87220 -0.002556968710223373 VYPPHSHSI 9 Unmodified _VYPPHSHSI_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 518.764166 1035.51378 -0.19536 -0.00010134 -0.46649 -0.000242 -0.66185 -0.00034334 518.764133792246 19.866 0.13978 19.866 19.801 19.941 0 0.15947 -0.00066334 NaN 67.344 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 925950 74849 7545;15223 49968 51054 -0.002556968710223373 VYPPHSHSI 9 Unmodified _VYPPHSHSI_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 518.764166 1035.51378 -0.53865 -0.00027943 0.87427 0.00045354 0.33562 0.00017411 518.7649113475635 19.737 0.11522 19.766 19.702 19.817 0.028357 0.058787 0.00072774 NaN 67.344 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 710440 74850 7545;15223 49968 51054 -0.002556968710223373 VYPPIRHHL 9 Unmodified _VYPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8857116699219 3 377.885576 1130.6349 NaN NaN NaN NaN NaN NaN NaN 25.72 1 25.703 25.203 26.203 -0.017006 0 0 0 0.083082 1 13197 13197 47.749 22.792 1 74851 6421 49969 51055 87222 87222 0.07480550562308963 VYPPIRHHL 9 Unmodified _VYPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.2196655273438 3 377.885576 1130.6349 NaN NaN NaN NaN NaN NaN NaN 26.052 1 26.035 25.535 26.535 -0.017006 0 0 0 0.27852 1 13383 13383 26.268 10.73 1 74852 6421 49969 51055 87223 87223 0.07480550562308963 VYPPIRHHL 9 Unmodified _VYPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.2188415527344 3 377.885576 1130.6349 0.19536 7.3824E-05 -0.50564 -0.00019107 -0.31027 -0.00011725 377.88540003843167 25.468 0.87016 25.493 24.883 25.753 0.024427 65 48 2 0 0 0 0.018301 4 13207 12883;13091;13207;13320 65.235 42.947 1 41168000 74853 6421 49969 51055 87224;87225;87226;87227 87226 0.07480550562308963 VYPPIRHHL 9 Unmodified _VYPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8858032226562 3 377.885576 1130.6349 1.2194 0.0004608 -0.32649 -0.00012338 0.89293 0.00033742 377.88549085882084 28.722 1.1452 25.574 24.807 25.952 -3.1482 200 61 5 0 0 0 0.07087 4 16124 15881;16006;16124;16297 39.95 21.887 1 373040000 74854 6421 49969 51055 87228;87229;87230;87231 87230 0.07480550562308963 VYPPIRHHL 9 Unmodified _VYPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.324951171875 2 566.324725 1130.6349 0.90302 0.0005114 0.88237 0.00049971 1.7854 0.0010111 566.3244066669743 28.731 0.7697 25.583 25.041 25.811 -3.1482 50 39 2 0 0 0 0.047788 2 16067 15944;16067 50.855 16.787 1 30700000 74855 6421 49969 51055 87232;87233 87233 0.07480550562308963 VYPPPHQVF 9 Unmodified _VYPPPHQVF_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2852783203125 2 542.284734 1082.55492 -0.25148 -0.00013638 3.9246 0.0021283 3.6731 0.0019919 542.788403890663 42.208 1.0632 41.901 41.574 42.637 -0.30682 85 50 3 0 0 0 0.06187 5 22505 22330;22382;22505;22629;22758 42.095 18.303 1 17477000 74856 1183 49970 51056 87234;87235;87236;87237;87238 87236 0.016940641684641378 VYPPPHQVFTW 11 Unmodified _VYPPPHQVFTW_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 685.849609375 2 685.84823 1369.68191 0.81103 0.00055624 0.30129 0.00020664 1.1123 0.00076288 685.8480845199151 64.848 0.79467 64.848 64.425 65.22 1.5259E-05 104 39 3 0 0 0 0.46197 1 35406 35406 28.495 22.763 1 5982900 74857 1183 49971 51057 87239 87239 0.011853653227717587 VYPPPHQVFTW 11 Unmodified _VYPPPHQVFTW_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.8475341796875 2 685.84823 1369.68191 1.2736 0.00087348 2.7127 0.0018605 3.9863 0.002734 686.3522899445253 71.554 0.93463 65.378 65.007 65.941 -6.1757 103 49 4 0 0 0 0.020907 3 46922 46630;46922;47087 70.332 44.064 1 59810000 74858 1183 49971 51057 87240;87241;87242 87241 0.011853653227717587 VYPPTPTVI 9 Unmodified _VYPPTPTVI_ 0 0 0 ENSG00000147324|ENST00000276282|MFHAS1;ENST00000520091.1_1_8:8647919-8679348:-|nuORF;ENST00000520715.5_1_8:8643534-8679348:-|nuORF ENSG00000147324|ENST00000276282|MFHAS1 ENSG00000147324|ENST00000276282|MFHAS1 MSMS AL20221201_MKP_PDAC_01 4 493.7821350097656 2 493.781493 985.548434 NaN NaN NaN NaN NaN NaN NaN 68.979 1 62.803 62.303 63.303 -6.1757 0 0 0 0.096036 1 45035 45035 44.407 19.733 1 74859 5840 49972 51058 87243 87243 0.05508126217080189 VYPQPGMQRF 10 Oxidation (M) _VYPQPGM(Oxidation (M))QRF_ VYPQPGM(1)QRF VYPQPGM(56)QRF 0 0 1 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.8032836914062 2 619.802965 1237.59138 -0.22357 -0.00013857 -0.44063 -0.0002731 -0.6642 -0.00041167 619.8029878567983 34.394 0.27073 34.203 34.02 34.291 -0.19131 33 10 4 0 0 0 0.0575 1 17922 17922 56.177 39.064 1 16820000 74860 6157 49973 51059 87244 87244 1100 -0.017914269971242902 VYPQPGMQRF 10 Oxidation (M) _VYPQPGM(Oxidation (M))QRF_ VYPQPGM(1)QRF VYPQPGM(59)QRF 0 0 1 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.803955078125 2 619.802965 1237.59138 0.1649 0.00010221 1.187 0.00073568 1.3519 0.00083789 619.8041811076012 38.556 0.39998 34.187 33.98 34.379 -4.3689 63 25 3 0 0 0 0.04925 3 22704 22680;22704;22837 58.679 19.708 1 31970000 74861 6157 49973 51059 87245;87246;87247 87246 1100 -0.017914269971242902 VYPQPGMQRF 10 Unmodified _VYPQPGMQRF_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8063354492188 2 611.805508 1221.59646 1.566 0.00095811 -0.22324 -0.00013658 1.3428 0.00082153 611.8052789653602 47.621 0.45686 42.387 42.142 42.599 -5.2339 74 26 4 0 0 0 0.039874 2 29582 29451;29582 74.929 34.658 1 44217000 74862 6157 49973 51060 87248;87249 87249 -0.005471231345154592 VYPQPGMQRF 10 Unmodified _VYPQPGMQRF_ 0 0 0 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MSMS AL20221201_MKP_PDAC_01 4 611.8060302734375 2 611.805508 1221.59646 NaN NaN NaN NaN NaN NaN NaN 47.839 1 42.605 42.105 43.105 -5.2339 0 0 0 0.48009 1 29733 29733 25.399 11.493 1 74863 6157 49973 51060 87250 87250 -0.005471231345154592 VYPQYVIEY 9 Unmodified _VYPQYVIEY_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2960205078125 2 587.294965 1172.57538 0.13777 8.0913E-05 0.15452 9.0749E-05 0.29229 0.00017166 587.2949896239646 66.031 0.64426 66.031 65.572 66.216 0 98 31 4 0 0 0 0.052168 1 36672 36672 44.407 20.386 1 29640000 74864 2379 49974 51061 87251 87251 -0.004008099623888484 VYPQYVIEY 9 Unmodified _VYPQYVIEY_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2960815429688 2 587.294965 1172.57538 0.08661 5.0866E-05 0.48454 0.00028457 0.57115 0.00033543 587.2953578055658 66.379 0.26035 65.895 65.744 66.005 -0.48323 44 13 4 0 0 0 0.087258 2 36210 36187;36210 36.044 17.898 1 16867000 74865 2379 49974 51061 87252;87253 87253 -0.004008099623888484 VYPQYVIEY 9 Unmodified _VYPQYVIEY_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7972412109375 2 587.294965 1172.57538 0.81525 0.00047879 0.76646 0.00045014 1.5817 0.00092893 587.2949255504141 72.646 0.42078 66.47 66.179 66.6 -6.1757 59 21 4 0 0 0 0.0082281 2 47404 47404;47520 92.822 45.073 1 76414000 74866 2379 49974 51061 87254;87255 87254 -0.004008099623888484 VYPRPIITW 9 Unmodified _VYPRPIITW_ 0 0 0 nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2 nc|ENSG00000114455|Q9UM44-2|HHLA2 nc|ENSG00000114455|Q9UM44-2|HHLA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.8291625976562 2 572.829309 1143.64407 0.52492 0.00030069 0.10521 6.0268E-05 0.63013 0.00036096 572.8294463151651 69.092 0.30318 69.123 68.97 69.273 0.030914 38 14 4 0 0 0 0.082934 1 37971 37971 47.749 30.806 1 5966800 74867 3041 49975 51062 87256 87256 0.07798899127988079 VYPRPIITW 9 Unmodified _VYPRPIITW_ 0 0 0 nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2 nc|ENSG00000114455|Q9UM44-2|HHLA2 nc|ENSG00000114455|Q9UM44-2|HHLA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.8291015625 2 572.829309 1143.64407 0.18887 0.00010819 -0.12767 -7.3136E-05 0.061192 3.5052E-05 572.829053874981 84.988 0.3926 78.812 78.564 78.957 -6.1757 39 22 2 0 0 0 0.033747 3 55855 55775;55855;55989 66.457 44.71 1 25324000 74868 3041 49975 51062 87257;87258;87259 87258 0.07798899127988079 VYPRYLQVF 9 Unmodified _VYPRYLQVF_ 0 0 0 REV__ENST00000582778.1_2_17:73282881-73284642:-|nuORF REV__ENST00000582778.1_2_17:73282881-73284642:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 592.3472290039062 2 592.826766 1183.63898 0.83657 0.00049594 -1.2031 -0.00071324 -0.36654 -0.00021729 592.8261889451536 100.47 0.2163 94.291 94.202 94.418 -6.1757 18 13 2 0 0 0 0.203 1 67218 67218 9.3474 0 1 22626000 + 74869 29056 49976 51063 87260 87260 0.05450595265347147 VYPSKQFDVL 10 Unmodified _VYPSKQFDVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.3220825195312 2 598.321514 1194.62847 0.33147 0.00019833 0.30251 0.000181 0.63398 0.00037932 598.3217029922167 55.133 0.34869 54.655 54.471 54.82 -0.47798 46 16 4 0 0 0 0.11824 1 29880 29880 43.772 19.752 1 7395400 74870 4010 49977 51064 87261 87261 0.038945678202935596 VYPSKQFDVL 10 Unmodified _VYPSKQFDVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3224487304688 2 598.321514 1194.62847 0.60586 0.0003625 0.1765 0.00010561 0.78237 0.00046811 598.3217229543751 60.81 0.38872 54.662 54.495 54.884 -6.1478 37 20 2 0 0 0 0.078742 2 39187 39070;39187 51.415 13.24 1 38999000 74871 4010 49977 51064 87262;87263 87263 0.038945678202935596 VYPSKQFDVL 10 Unmodified _VYPSKQFDVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 598.321514 1194.62847 0.71076 0.00042526 -0.26442 -0.00015821 0.44634 0.00026705 598.3211255412481 54.617 0.2794 54.617 54.462 54.741 0 -0.028019 -0.00053954 NaN 51.415 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 749270 74872 4010 49977 51064 0.038945678202935596 VYPSRAVITTM 11 Oxidation (M) _VYPSRAVITTM(Oxidation (M))_ VYPSRAVITTM(1) VYPSRAVITTM(90) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3316650390625 2 627.331556 1252.64856 -0.43133 -0.00027058 -0.03383 -2.1222E-05 -0.46516 -0.00029181 627.3317989423394 34.338 0.25183 34.147 33.998 34.25 -0.19132 30 9 4 0 0 0 0.00041721 1 17904 17904 89.609 65.588 1 14403000 74873 3444 49978 51065 87264 87264 615 0.032339954885628686 VYPSRAVITTM 11 Oxidation (M) _VYPSRAVITTM(Oxidation (M))_ VYPSRAVITTM(1) VYPSRAVITTM(77) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.3323364257812 2 627.331556 1252.64856 0.28212 0.00017698 -0.95144 -0.00059687 -0.66932 -0.00041988 627.3314030850884 34.021 0.25309 34.05 33.952 34.205 0.028931 33 11 4 0 0 0 0.0039716 1 17912 17912 77.049 55.512 1 7435700 74874 3444 49978 51065 87265 87265 615 0.032339954885628686 VYPSRAVITTM 11 Oxidation (M) _VYPSRAVITTM(Oxidation (M))_ VYPSRAVITTM(1) VYPSRAVITTM(81) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3319091796875 2 627.331556 1252.64856 0.6726 0.00042194 -1.8208 -0.0011423 -1.1482 -0.00072031 627.3311860789295 39.106 0.37015 34.655 34.488 34.858 -4.4509 50 23 3 0 0 0 0.0017085 2 23102 23102;23252 80.896 57.106 1 21704000 74875 3444 49978 51065 87266;87267 87266 615 0.032339954885628686 VYPSRAVITTM 11 Unmodified _VYPSRAVITTM_ 0 0 0 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3330078125 2 619.334098 1236.65364 0.34282 0.00021232 0.39239 0.00024302 0.73521 0.00045534 619.3342950994103 52.111 0.34648 46.377 46.234 46.58 -5.7345 34 22 2 0 0 0 0.010954 2 32863 32863;33014 78.61 42.104 1 37524000 74876 3444 49978 51066 87268;87269 87268 0.04478299351194437 VYPSSLSKI 9 Unmodified _VYPSSLSKI_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2845458984375 2 497.2844 992.554247 0.28834 0.00014339 1.3084 0.00065066 1.5968 0.00079404 497.2852316333879 43.278 0.23669 43.278 43.162 43.399 0 20 11 2 0 0 0 0.11784 1 23484 23484 31.268 2.1868 1 5797100 74877 2794 49979 51067 87270 87270 0.05767224728754172 VYPSSLSKI 9 Unmodified _VYPSSLSKI_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.284423828125 2 497.2844 992.554247 0.15612 7.7636E-05 -0.17033 -8.4701E-05 -0.014208 -7.0653E-06 497.284198588266 43.456 0.24765 43.146 43.025 43.272 -0.31039 27 11 3 0 0 0 0.047788 1 23106 23106 45.7 13.394 1 31287000 74878 2794 49979 51067 87271 87271 0.05767224728754172 VYPSSLSKI 9 Unmodified _VYPSSLSKI_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2847595214844 2 497.2844 992.554247 0.64728 0.00032188 -0.13618 -6.7722E-05 0.51109 0.00025416 497.2842371050745 43.13 0.22665 43.115 42.999 43.226 -0.015667 15 10 2 0 0 0 0.025842 1 23094 23094 57.722 21.595 1 9148300 74879 2794 49979 51067 87272 87272 0.05767224728754172 VYPSSLSKI 9 Unmodified _VYPSSLSKI_ 0 0 0 ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-2|CAND1 ENSG00000111530|ENST00000545606|CAND1 ENSG00000111530|ENST00000545606|CAND1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2836303710938 2 497.2844 992.554247 0.93585 0.00046538 0.46672 0.00023209 1.4026 0.00069747 497.2845559028511 48.299 0.59119 43.065 42.774 43.365 -5.2339 90 35 3 0 0 0 0.025842 3 29923 29923;30046;30178 57.722 21.595 1 129710000 74880 2794 49979 51067 87273;87274;87275 87273 0.05767224728754172 VYPTAVHVL 9 Unmodified _VYPTAVHVL_ 0 0 0 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7870788574219 2 499.78711 997.559667 -0.11543 -5.769E-05 -0.27922 -0.00013955 -0.39465 -0.00019724 499.7868845169286 51.722 0.3222 51.288 51.115 51.437 -0.43367 30 16 2 0 0 0 0.068777 1 27890 27890 40.449 15.049 1 14906000 74881 2870 49980 51068 87276 87276 0.06078948311221666 VYPTKKHLI 9 Unmodified _VYPTKKHLI_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2283020019531 3 366.893848 1097.65972 -0.42029 -0.0001542 0.38 0.00013942 -0.04029 -1.4782E-05 366.89373805079333 20.161 0.11092 20.189 20.113 20.224 0.028355 6 4 2 0 0 0 0.4887 1 10209 10209 8.1555 6.0695 1 396120 74882 9334 49981 51069 87277 87277 0.11479185645021062 VYPTKKHLI 9 Unmodified _VYPTKKHLI_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.8944396972656 3 366.893848 1097.65972 0.05642 2.07E-05 0.74681 0.000274 0.80323 0.0002947 366.894079975829 20.208 0.16795 20.218 20.111 20.279 0.010551 24 8 4 0 0 0 0.18144 1 10292 10292 24.991 15.447 1 1400500 74883 9334 49981 51069 87278 87278 0.11479185645021062 VYPTKKHLI 9 Unmodified _VYPTKKHLI_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8941345214844 3 366.893848 1097.65972 0.76278 0.00027986 -0.6054 -0.00022212 0.15738 5.7743E-05 366.8937059952116 23.184 0.3539 20.405 20.232 20.586 -2.7784 56 31 2 0 0 0 0.15882 1 12524 12524 27.223 18.247 1 20000000 74884 9334 49981 51069 87279 87279 0.11479185645021062 VYPTLSQQL 9 Unmodified _VYPTLSQQL_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10;nc|ENSG00000160218|P48553-2|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.7879638671875 2 524.787307 1047.56006 1.499 0.00078665 -0.50937 -0.00026731 0.98961 0.00051933 524.7869640614693 64.228 0.55077 58.052 57.765 58.315 -6.1757 54 26 3 0 0 0 0.10247 1 41663 41663 44.407 8.3628 1 26350000 74885 6704 49982 51070 87280 87280 0.038183232404207956 VYPTQDDLK 9 Unmodified _VYPTQDDLK_ 0 0 0 nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;ENST00000534945.2_1_12:125834026-126068624:+|nuORF;nc|ENSG00000139364|Q14DG7-2|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B nc|ENSG00000139364|Q14DG7|TMEM132B MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5259094238281 3 360.185356 1077.53424 0.85003 0.00030617 1.441 0.00051903 2.291 0.0008252 360.1859563618421 22.924 0.47172 20.146 19.887 20.359 -2.7784 71 33 4 0 0 0 0.43463 1 12274 12274 7.1017 0.89594 1 30596000 74886 5151 49983 51071 87281 87281 -0.0014257100187933247 VYPTSFIITI 10 Unmodified _VYPTSFIITI_ 0 0 0 nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A nc|ENSG00000169894|Q02505-5|MUC3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3270874023438 2 577.328808 1152.64306 4.1337 0.0023865 0.41916 0.000242 4.5529 0.0026285 577.3292006604837 99.345 0.14101 99.317 99.246 99.387 -0.028282 10 4 3 0 0 0 0.30444 1 55186 55186 39.957 1.9833 1 4472900 74887 7924 49984 51072 87282 87282 0.07284639968429474 VYPVITARL 9 Unmodified _VYPVITARL_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.31640625 2 516.316035 1030.61752 0.41013 0.00021176 -0.15619 -8.0643E-05 0.25394 0.00013111 516.316026493964 59.664 0.39603 59.611 59.38 59.776 -0.053059 30 19 2 0 0 0 0.07087 1 32495 32495 39.95 15.929 1 5304200 74888 2169 49985 51073 87283 87283 0.10343210236646883 VYPVITARL 9 Unmodified _VYPVITARL_ 0 0 0 nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106;nc|ENSG00000103994|Q9H2Y7-2|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 nc|ENSG00000103994|Q9H2Y7|ZNF106 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.319091796875 2 516.316035 1030.61752 0.63964 0.00033026 0.3532 0.00018236 0.99284 0.00051262 516.3162011630471 65.117 0.41454 58.941 58.734 59.148 -6.1757 40 22 2 0 0 0 0.11784 1 42204 42204 31.268 9.5217 1 14166000 74889 2169 49985 51073 87284 87284 0.10343210236646883 VYPWLGALL 9 Unmodified _VYPWLGALL_ 0 0 0 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 ENSG00000073067|ENST00000308919|CYP2W1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.3004150390625 2 516.299853 1030.58515 0.66795 0.00034487 -0.40738 -0.00021033 0.26057 0.00013453 516.2996831102437 101.86 0.22298 95.689 95.574 95.797 -6.1757 23 14 4 0 0 0 0.047696 1 68328 68328 45.75 11.563 1 71643000 74890 1100 49986 51074 87285 87285 0.07108422833653094 VYPWTQRF 8 Unmodified _VYPWTQRF_ 0 0 0 ENST00000485743.1_1_11:5247788-5248251:-|nuORF;ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;CON__P02070;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2 ENST00000485743.1_1_11:5247788-5248251:-|nuORF ENST00000485743.1_1_11:5247788-5248251:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 548.78369140625 2 548.782359 1095.55016 NaN NaN NaN NaN NaN NaN NaN 62.721 1 56.545 56.045 57.045 -6.1757 0 0 0 0.4236 1 40488 40488 50.855 25.456 1 + 74891 201 49987 51075 87286 87286 0.006211800257005962 VYPYKLYRL 9 Unmodified _VYPYKLYRL_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5693969726562 3 405.569253 1213.68593 0.14696 5.9603E-05 0.095697 3.8812E-05 0.24266 9.8415E-05 405.5694271132545 49.145 0.55035 49.101 48.867 49.417 -0.04369 61 26 4 0 0 0 0.042911 2 26584 26479;26584 43.772 37.581 1 8091600 74892 8675 49988 51076 87287;87288 87288 0.08763454816494232 VYPYKLYRL 9 Unmodified _VYPYKLYRL_ 0 0 0 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 ENSG00000177311|ENST00000321464|ZBTB38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.56982421875 3 405.569253 1213.68593 1.3498 0.00054746 -0.30283 -0.00012282 1.047 0.00042464 405.90356207777404 53.798 0.33963 47.994 47.879 48.219 -5.8042 39 20 3 0 0 0 0.042911 2 34040 34040;34190 36.506 28.351 1 18674000 74893 8675 49988 51076 87289;87290 87289 0.08763454816494232 VYQDGLSKLD 10 Unmodified _VYQDGLSKLD_ 0 0 0 REV__ENST00000489852.1_1_7:96747035-96772137:+|nuORF REV__ENST00000489852.1_1_7:96747035-96772137:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8653259277344 3 379.864394 1136.57135 1.6671 0.00063327 0.087731 3.3326E-05 1.7548 0.00066659 379.8644266134481 21.371 0.50902 18.636 18.391 18.9 -2.7348 156 41 5 0 0 0 0.43662 1 11371 11371 19.626 0 1 273760000 + 74894 23852 49989 51077 87291 87291 0.008531005438953798 VYQDYHTVW 9 Unmodified _VYQDYHTVW_ 0 0 0 ENST00000509220.1_1_4:47462124-47465668:-|nuORF;ENSG00000169019|ENST00000381571|COMMD8 ENST00000509220.1_1_4:47462124-47465668:-|nuORF ENST00000509220.1_1_4:47462124-47465668:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7802734375 2 605.780013 1209.54547 NaN NaN NaN NaN NaN NaN NaN 47.954 1 47.601 47.101 48.101 -0.3526 0 0 0 0.6306 1 25718 25718 11.64 3.047 1 74895 7826 49990 51078 87292 87292 -0.050917489077164646 VYQELLELF 9 Unmodified _VYQELLELF_ 0 0 0 REV__ENSG00000196576|ENST00000359337|PLXNB2 REV__ENSG00000196576|ENST00000359337|PLXNB2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 577.3677978515625 2 577.310615 1152.60668 1.1356 0.00065558 1.8588 0.0010731 2.9944 0.0017287 577.3109954424697 100.44 0.174 94.267 94.171 94.345 -6.1757 18 10 3 0 0 0 0.19891 1 67196 67196 7.2892 6.8309 1 56105000 + 74896 23848 49991 51079 87293 87293 0.036477630716944986 VYQEMPAQL 9 Oxidation (M) _VYQEM(Oxidation (M))PAQL_ VYQEM(1)PAQL VYQEM(46)PAQL 0 0 1 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7621459960938 2 547.762975 1093.5114 0.2565 0.0001405 -3.1385 -0.0017192 -2.882 -0.0015787 547.7624347430177 37.402 0.29047 37.402 37.238 37.529 0 37 15 3 0 0 0 0.047196 1 19895 19895 46.021 26.764 1 8609900 74897 10740 49992 51080 87294 87294 1719 -0.031619133909771335 VYQEMPAQL 9 Unmodified _VYQEMPAQL_ 0 0 0 ENSG00000248098|ENST00000269980|BCKDHA;nc|ENSG00000248098|P12694-2|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA ENSG00000248098|ENST00000269980|BCKDHA MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7701416015625 2 539.765517 1077.51648 0.78941 0.0004261 -0.093238 -5.0327E-05 0.69618 0.00037577 539.7656313738102 59.839 0.68053 53.724 53.337 54.018 -6.1147 94 37 4 0 0 0 0.14 1 38189 38189 29.082 9.6426 1 262710000 74898 10740 49992 51081 87295 87295 -0.019176095283455652 VYQEPIPTAQL 11 Unmodified _VYQEPIPTAQL_ 0 0 0 ENSG00000106588|ENST00000223321|PSMA2;ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF ENSG00000106588|ENST00000223321|PSMA2 ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.8394165039062 2 629.837528 1257.6605 0.43538 0.00027422 1.9336 0.0012178 2.369 0.0014921 629.838615965468 60.851 0.20825 60.851 60.767 60.975 0 12 8 2 0 0 0 0.35681 1 33955 33955 23.79 9.8837 1 913580 74899 2440 49993 51082 87296 87296 0.041979355034072796 VYQERLARL 9 Unmodified _VYQERLARL_ 0 0 0 nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.2252502441406 3 383.224257 1146.65094 -0.23916 -9.1651E-05 1.2796 0.00049037 1.0404 0.00039871 383.2247819709528 32.888 0.23751 32.729 32.622 32.86 -0.15918 23 9 3 0 0 0 0.36964 1 17120 17120 13.615 9.086 1 3456500 74900 2745 49994 51083 87297 87297 0.0834821200855913 VYQERLARL 9 Unmodified _VYQERLARL_ 0 0 0 nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 nc|ENSG00000110841|Q86W92-4|PPFIBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2248229980469 3 383.224257 1146.65094 1.0104 0.00038722 0.63684 0.00024405 1.6473 0.00063127 383.2243648317427 36.596 0.41275 32.312 32.111 32.524 -4.2835 37 25 2 0 0 0 0.1773 1 21302 21302 23.79 15.634 1 14658000 74901 2745 49994 51083 87298 87298 0.0834821200855913 VYQETRERL 9 Unmodified _VYQETRERL_ 0 0 0 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5462646484375 3 398.547288 1192.62004 -0.49841 -0.00019864 0.52248 0.00020823 0.024064 9.5907E-06 398.54750294855774 20.067 0.1836 20.067 19.959 20.143 0 56 19 4 0 0 0 0.56345 1 10037 10037 2.086 0 1 5611100 74902 7848 49995 51084 87299 87299 0.031430139036501714 VYQETRERL 9 Unmodified _VYQETRERL_ 0 0 0 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5475463867188 3 398.547288 1192.62004 0.78581 0.00031318 0.83984 0.00033472 1.6257 0.0006479 398.5475267916932 22.307 0.30147 19.572 19.412 19.714 -2.7348 39 15 3 0 0 0 0.19127 1 11953 11953 17.443 7.8987 1 15268000 74903 7848 49995 51084 87300 87300 0.031430139036501714 VYQETRERL 9 Unmodified _VYQETRERL_ 0 0 0 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 ENSG00000169217|ENST00000305596|CD2BP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 398.547288 1192.62004 -0.49841 -0.00019864 0.52248 0.00020823 0.024064 9.5907E-06 398.54750294855774 20.067 0.1836 20.067 19.959 20.143 0 0 0 NaN 2.086 56 19 4 NaN NaN NaN NaN 0 NaN NaN 0 5611100 74904 7848 49995 51084 0.031430139036501714 VYQFGSALAHF 11 Unmodified _VYQFGSALAHF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.3099365234375 2 620.31148 1238.60841 0.56296 0.00034921 -0.78182 -0.00048497 -0.21887 -0.00013576 620.3107102516545 70.042 0.30913 70.073 69.92 70.229 0.030914 34 15 3 0 0 0 0.00047726 1 38548 38548 88.954 54.552 1 5499300 74905 9082 49996 51085 87301 87301 -0.0013518311968709895 VYQFGSALAHF 11 Unmodified _VYQFGSALAHF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.31396484375 2 620.31148 1238.60841 0.3575 0.00022176 2.5474 0.0015802 2.9049 0.0018019 620.313501134889 82.257 0.57698 76.082 75.602 76.179 -6.1757 45 31 2 0 0 0 0.0088414 2 53939 53774;53939 69.105 36.319 1 11763000 74906 9082 49996 51085 87302;87303 87303 -0.0013518311968709895 VYQFGSALAHF 11 Unmodified _VYQFGSALAHF_ 0 0 0 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 ENSG00000182749|ENST00000675840|PAQR7 MSMS AL20221201_MKP_PDAC_01 4 620.3140258789062 2 620.31148 1238.60841 NaN NaN NaN NaN NaN NaN NaN 81.646 1 75.471 74.971 75.971 -6.1757 0 0 0 0.049352 1 53603 53603 62.573 18.591 1 74907 9082 49996 51085 87304 87304 -0.0013518311968709895 VYQGHTALL 9 Unmodified _VYQGHTALL_ 0 0 0 nc|ENSG00000112655|Q13308-3|PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 nc|ENSG00000112655|Q13308-3|PTK7 MSMS AL20221201_MKP_PDAC_01 4 501.2750854492188 2 501.274367 1000.53418 NaN NaN NaN NaN NaN NaN NaN 43.398 1 38.633 38.133 39.133 -4.7648 0 0 0 0.038824 1 26358 26358 62.573 12.904 1 74908 2906 49997 51086 87305 87305 0.033934737887989286 VYQHGLTGF 9 Unmodified _VYQHGLTGF_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2591552734375 2 511.258717 1020.50288 -0.31058 -0.00015878 -0.064407 -3.2929E-05 -0.37498 -0.00019171 511.25866301114394 42.118 0.32204 41.811 41.619 41.941 -0.30682 34 15 3 0 0 0 0.0059585 2 22310 22310;22415 114.65 58.472 1 74526000 74909 584 49998 51087 87306;87307 87306 -0.006550992452844184 VYQHGLTGF 9 Unmodified _VYQHGLTGF_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2578125 2 511.258717 1020.50288 0.10918 5.582E-05 0.56494 0.00028883 0.67412 0.00034465 511.25861637657533 41.799 0.24316 41.797 41.701 41.944 -0.0017891 17 11 2 0 0 0 0.0044708 1 22368 22368 118.89 66.626 1 8956600 74910 584 49998 51087 87308 87308 -0.006550992452844184 VYQHGLTGF 9 Unmodified _VYQHGLTGF_ 0 0 0 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 ENSG00000030110|ENST00000374467|BAK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2580871582031 2 511.258717 1020.50288 0.27007 0.00013807 -0.16141 -8.2523E-05 0.10866 5.5552E-05 511.25871301027416 46.719 0.42216 41.639 41.464 41.886 -5.0805 203 83 3 0 0 0 0.0082661 3 28801 28801;28933;29064 92.491 40.223 1 219070000 74911 584 49998 51087 87309;87310;87311 87309 -0.006550992452844184 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.8888244628906 3 392.888986 1175.64513 -0.15909 -6.2504E-05 0.09984 3.9226E-05 -0.059249 -2.3278E-05 392.88897131004296 45.04 0.39383 45.018 44.855 45.249 -0.022064 66 21 4 0 0 0 0.013041 2 24225 24119;24225 65.474 51.068 1 475630000 74912 10702 49999 51088 87312;87313 87313 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8299560546875 2 588.82984 1175.64513 0.038775 2.2832E-05 -0.47706 -0.00028091 -0.43829 -0.00025808 589.3311443339109 45.069 0.2558 45.047 44.875 45.13 -0.022064 37 13 3 0 0 0 0.00010239 2 24133 24133;24232 152.89 86.429 1 137660000 74913 10702 49999 51088 87314;87315 87314 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2236022949219 3 392.888986 1175.64513 1.0792 0.00042402 0.43502 0.00017091 1.5143 0.00059494 392.88911703651735 49.909 0.68289 44.37 44.125 44.808 -5.5391 144 43 5 0 0 0 0.062454 3 31086 31086;31212;31344 39.213 17.676 1 558940000 74914 10702 49999 51088 87316;87317;87318 87316 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8304443359375 2 588.82984 1175.64513 0.71627 0.00042176 0.79479 0.000468 1.5111 0.00088976 588.8296926882749 49.919 0.5084 44.38 44.125 44.633 -5.5391 65 32 3 0 0 0 0.01085 2 31295 31155;31295 78.06 43.128 1 113980000 74915 10702 49999 51088 87319;87320 87320 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8890380859375 3 392.888986 1175.64513 0.91194 0.00035829 0.40336 0.00015848 1.3153 0.00051677 392.88907791765774 67.714 3.0039 61.538 59.74 62.743 -6.1757 390 172 3 0 0 0 0.01958 11 43430 43014;43153;43294;43430;43571;43700;43831;44096;44229;44370;44509 59.052 29.456 1 88874000 74916 10702 49999 51088 87321;87322;87323;87324;87325;87326;87327;87328;87329;87330;87331 87324 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8275146484375 2 588.82984 1175.64513 0.48761 0.00028712 0.95485 0.00056224 1.4425 0.00084936 588.8290335686015 66.426 0.45844 60.25 60.045 60.503 -6.1757 32 25 2 0 0 0 0.044296 1 43204 43204 47.594 19.108 1 6677500 74917 10702 49999 51088 87332 87332 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.82958984375 2 588.82984 1175.64513 0.58284 0.00034319 0.77363 0.00045554 1.3565 0.00079873 588.8302281060243 68.144 1.9106 61.968 60.681 62.592 -6.1757 182 110 2 0 0 0 0.0088668 4 43863 43721;43863;44437;44609 87.258 39.664 1 33224000 74918 10702 49999 51088 87333;87334;87335;87336 87334 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS AL20221201_MKP_PDAC_01 4 392.8892822265625 3 392.888986 1175.64513 NaN NaN NaN NaN NaN NaN NaN 68.396 1 62.22 61.72 62.72 -6.1757 0 0 0 0.076083 1 44639 44639 39.213 23.064 1 74919 10702 49999 51088 87337 87337 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS AL20221201_MKP_PDAC_01 4 392.889404296875 3 392.888986 1175.64513 NaN NaN NaN NaN NaN NaN NaN 68.571 1 62.395 61.895 62.895 -6.1757 0 0 0 0.54558 1 44764 44764 10.315 2.7063 1 74920 10702 49999 51088 87338 87338 0.0643311349688247 VYQHLFTRI 9 Unmodified _VYQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MSMS AL20221201_MKP_PDAC_01 4 392.8895263671875 3 392.888986 1175.64513 NaN NaN NaN NaN NaN NaN NaN 68.788 1 62.613 62.113 63.113 -6.1757 0 0 0 0.068038 1 44911 44911 40.725 20.144 1 74921 10702 49999 51088 87339 87339 0.0643311349688247 VYQIFDTFF 9 Unmodified _VYQIFDTFF_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1 nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.28955078125 2 590.289682 1178.56481 0.80571 0.0004756 -1.0009 -0.00059083 -0.1952 -0.00011523 590.2892291476956 101.4 0.12943 95.222 95.144 95.274 -6.1757 12 6 3 0 0 0 0.07916 1 68017 68017 37.974 0 1 25868000 74922 4267 50000 51089 87340 87340 -0.01732792616826373 VYQKIHNEKF 10 Unmodified _VYQKIHNEKF_ 0 0 0 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.9031372070312 3 435.903183 1304.68772 -0.34532 -0.00015052 -0.10384 -4.5263E-05 -0.44915 -0.00019579 435.9033902153598 19.155 0.091291 19.155 19.094 19.185 0 11 5 3 0 0 0 0.66658 1 9565 9565 6.6235 6.6235 1 1001500 74923 9443 50001 51090 87341 87341 0.04756463834451097 VYQKIHNEKF 10 Unmodified _VYQKIHNEKF_ 0 0 0 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.9030151367188 3 435.903183 1304.68772 -0.57513 -0.0002507 0.32135 0.00014008 -0.25379 -0.00011063 435.9031707318955 18.995 0.12342 19.018 18.944 19.067 0.023106 18 7 3 0 0 0 0.56707 1 9553 9553 12.856 9.2689 1 1780000 74924 9443 50001 51090 87342 87342 0.04756463834451097 VYQKIHNEKF 10 Unmodified _VYQKIHNEKF_ 0 0 0 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.9030151367188 3 435.903183 1304.68772 1.2998 0.00056659 -0.51558 -0.00022474 0.78423 0.00034185 435.9029722144017 21.004 0.30473 18.311 18.148 18.453 -2.693 52 16 4 0 0 0 0.42967 1 11194 11194 19.987 15.271 1 13567000 74925 9443 50001 51090 87343 87343 0.04756463834451097 VYQKIHNEKF 10 Unmodified _VYQKIHNEKF_ 0 0 0 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 ENSG00000186020|ENST00000591340|ZNF529 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 435.903183 1304.68772 0.28652 0.00012489 0.81415 0.00035489 1.1007 0.00047979 436.2380586783909 19.083 0.11531 19.091 19.031 19.146 0.0078487 0.0026404 0.00069239 NaN 12.856 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 733980 74926 9443 50001 51090 0.04756463834451097 VYQKLSIQL 9 Unmodified _VYQKLSIQL_ 0 0 0 ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6 ENSG00000112701|ENST00000447266|SENP6 ENSG00000112701|ENST00000447266|SENP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3289184570312 2 546.326599 1090.63865 0.79028 0.00043175 1.2013 0.00065632 1.9916 0.0010881 546.3272783530157 57.626 0.27786 57.56 57.397 57.675 -0.066036 30 13 3 0 0 0 0.12424 1 31335 31335 30.637 9.0996 1 4794000 74927 2912 50002 51091 87344 87344 0.09695175545539314 VYQKLSIQL 9 Unmodified _VYQKLSIQL_ 0 0 0 ENSG00000112701|ENST00000447266|SENP6;nc|ENSG00000112701|Q9GZR1-2|SENP6 ENSG00000112701|ENST00000447266|SENP6 ENSG00000112701|ENST00000447266|SENP6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.326599 1090.63865 0.18754 0.00010246 1.1 0.00060096 1.2875 0.00070342 546.326707041995 57.946 0.1659 57.456 57.39 57.556 -0.48974 -0.051851 -0.0001003 NaN 30.637 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 857950 74928 2912 50002 51091 0.09695175545539314 VYQKTRQPR 9 Unmodified _VYQKTRQPR_ 0 0 0 REV__nc|ENSG00000134291|Q9BVX2-2|TMEM106C REV__nc|ENSG00000134291|Q9BVX2-2|TMEM106C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5595703125 3 392.55964 1174.65709 -0.26364 -0.0001035 0.078337 3.0752E-05 -0.18531 -7.2744E-05 392.5596480429607 32.335 0.22868 32.365 32.237 32.466 0.029743 23 9 3 0 0 0 0.44883 1 16949 16949 10.151 0.38632 1 9434700 + 74929 19973 50003 51092 87345 87345 0.07674730240069039 VYQLRFQF 8 Unmodified _VYQLRFQF_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5336608886719 3 367.534431 1099.58147 -0.56947 -0.0002093 -2.1081 -0.0007748 -2.6776 -0.0009841 367.5338422692129 18.896 0.088032 18.919 18.874 18.962 0.023106 7 5 2 0 0 0 8.7369 1 9521 9521 0.45834 0 1 302340 74930 983 50004 51093 87346 87346 0.035657530597973164 VYQLRFQFL 9 Unmodified _VYQLRFQFL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.8414306640625 2 607.340041 1212.66553 -0.076833 -4.6664E-05 -1.0483 -0.00063666 -1.1251 -0.00068333 607.3390955882982 84.117 0.356 84.18 83.998 84.354 0.063171 43 14 4 0 0 0 0.0074135 2 46591 46483;46591 112.59 81.957 1 196500000 74931 983 50005 51094 87347;87348 87348 0.06770284156687012 VYQLRFQFL 9 Unmodified _VYQLRFQFL_ 0 0 0 ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A ENSG00000068654|ENST00000263857|POLR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3416137695312 2 607.340041 1212.66553 1.2407 0.00075355 -0.64168 -0.00038972 0.59906 0.00036383 607.3397215344625 98.203 0.25662 92.027 91.891 92.148 -6.1757 65 16 5 0 0 0 0.0086209 1 65075 65075 112.59 84.106 1 1357400000 74932 983 50005 51094 87349 87349 0.06770284156687012 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8638610839844 3 379.86484 1136.57269 -0.49517 -0.0001881 0.13827 5.2526E-05 -0.35689 -0.00013557 379.86488718067767 19.46 0.22757 19.46 19.357 19.585 0 93 25 5 0 0 0 0.036857 1 9703 9703 51.63 34.187 1 37520000 74933 35 50006 51095 87350 87350 0.009867794233286986 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.794677734375 2 569.293622 1136.57269 -0.21186 -0.00012061 0.14564 8.2911E-05 -0.066225 -3.7701E-05 569.2937063433004 19.459 0.15106 19.459 19.372 19.524 0 37 15 3 0 0 0 0.14594 1 9725 9725 37.974 28.627 1 2049600 74934 35 50006 51095 87351 87351 0.009867794233286986 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.8648376464844 3 379.86484 1136.57269 -0.50447 -0.00019163 0.85562 0.00032502 0.35114 0.00013339 379.86514662026315 19.339 0.21528 19.362 19.253 19.468 0.023106 55 17 5 0 0 0 0.025842 1 9720 9720 57.722 45.481 1 20438000 74935 35 50006 51095 87352 87352 0.009867794233286986 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.293212890625 2 569.293622 1136.57269 -0.34503 -0.00019642 0.86081 0.00049005 0.51578 0.00029363 569.294188715162 19.339 0.13071 19.362 19.288 19.418 0.023106 19 9 3 0 0 0 0.4887 1 9728 9728 7.9102 7.3087 1 1154800 74936 35 50006 51095 87353 87353 0.009867794233286986 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.8646240234375 3 379.86484 1136.57269 0.089193 3.3881E-05 0.77353 0.00029384 0.86272 0.00032772 379.8651392562719 19.439 0.1688 19.447 19.36 19.529 0.0078506 22 10 3 0 0 0 0.35911 1 9870 9870 14.405 5.66 1 3239400 74937 35 50006 51095 87354 87354 0.009867794233286986 VYQNHVQHL 9 Unmodified _VYQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.29541015625 2 569.293622 1136.57269 1.3244 0.000754 -1.1219 -0.0006387 0.20252 0.0001153 569.2930737528648 21.379 0.36635 18.644 18.447 18.813 -2.7348 99 33 4 0 0 0 0.0019086 2 11374 11374;11496 164.52 132.21 1 36343000 74938 35 50006 51095 87355;87356 87355 0.009867794233286986 VYQNIFTAM 9 Oxidation (M) _VYQNIFTAM(Oxidation (M))_ VYQNIFTAM(1) VYQNIFTAM(60) 0 0 1 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7642211914062 2 551.765517 1101.51648 -0.46866 -0.00025859 -0.9507 -0.00052456 -1.4194 -0.00078316 551.7649014870375 56.097 0.33483 55.611 55.394 55.728 -0.48554 42 16 3 0 0 0 0.023164 2 30414 30414;30514 60.39 39.936 1 11268000 74939 1481 50007 51096 87357;87358 87357 254 -0.030216095283549294 VYQNIFTAM 9 Unmodified _VYQNIFTAM_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.7688598632812 2 543.76806 1085.52157 NaN NaN NaN NaN NaN NaN NaN 75.606 1 75.654 75.154 76.154 0.047943 0 0 0 0.63508 1 41697 41697 16.942 8.349 1 74940 1481 50007 51097 87359 87359 -0.01777305665723361 VYQNIFTAM 9 Unmodified _VYQNIFTAM_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11;ENSG00000156052|ENST00000286548|GNAQ;ENSG00000156049|ENST00000341700|GNA14 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.768798828125 2 543.76806 1085.52157 0.75573 0.00041094 0.024991 1.3589E-05 0.78072 0.00042453 543.7677983881784 83.239 1.2606 77.063 76.106 77.366 -6.1757 158 69 4 0 0 0 0.047788 2 54785 54653;54785 60.39 21.27 1 38708000 74941 1481 50007 51097 87360;87361 87361 -0.01777305665723361 VYQNVPVLQF 10 Unmodified _VYQNVPVLQF_ 0 0 0 REV__ENSG00000081026|ENST00000307546|MAGI3 REV__ENSG00000081026|ENST00000307546|MAGI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8343505859375 2 603.829506 1205.64446 0.13873 8.3772E-05 -3.857 -0.002329 -3.7183 -0.0022452 603.8270021961354 79.558 0.27126 79.613 79.523 79.795 0.05497 24 10 3 0 0 0 0.13391 1 43936 43936 41.84 5.7954 1 10274000 + 74942 17679 50008 51098 87362 87362 0.04986274057182527 VYQPTLDPMY 10 Unmodified _VYQPTLDPMY_ 0 0 0 REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF REV__ENST00000462798.1_1_1:6592521-6593409:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 409.5295715332031 3 409.530247 1225.56891 NaN NaN NaN NaN NaN NaN NaN 22.593 1 19.814 19.314 20.314 -2.7784 0 0 0 0.96981 1 12158 12158 3.8763 1.033 1 + 74943 21642 50009 51099 87363 87363 -0.03485071185400557 VYQPVTTECF 10 Carbamidomethyl (C) _VYQPVTTEC(Carbamidomethyl (C))F_ VYQPVTTEC(1)F VYQPVTTEC(76)F 0 1 0 ENSG00000147854|ENST00000276893|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 ENSG00000147854|ENST00000276893|UHRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.2863159179688 2 622.286814 1242.55907 0.78708 0.00048979 0.35918 0.00022351 1.1463 0.0007133 622.2867950823462 60.465 0.33997 54.317 54.104 54.444 -6.1478 29 17 2 0 0 0 0.0199 1 38931 38931 75.761 55.307 1 32797000 74944 5885 50010 51100 87364 87364 598 -0.052502591908250906 VYQQEKARMGS 11 Unmodified _VYQQEKARMGS_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.875244140625 3 432.883683 1295.62922 NaN NaN NaN NaN NaN NaN NaN 32.797 1 32.637 32.137 33.137 -0.15918 0 0 0 0.94037 1 17089 17089 2.2527 0.16672 1 74945 502 50011 51101 87365 87365 -0.006769608023205365 VYQQRWDF 8 Unmodified _VYQQRWDF_ 0 0 0 REV__nc|ENSG00000127463|Q8N766-4|EMC1 REV__nc|ENSG00000127463|Q8N766-4|EMC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 381.5729064941406 3 381.185691 1140.53524 -0.21549 -8.2143E-05 0.66827 0.00025473 0.45277 0.00017259 381.1859545466649 36.26 0.18808 36.285 36.187 36.375 0.024967 16 7 3 0 0 0 8.7369 1 19161 19161 4.3292 1.334 1 1299100 + 74946 19582 50012 51102 87366 87366 -0.029403118423033447 VYQQTSHMM 9 Oxidation (M) _VYQQTSHMM(Oxidation (M))_ VYQQTSHM(0.102)M(0.898) VYQQTSHM(-9.5)M(9.5) 0 0 1 nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5 nc|ENSG00000102908|O94916-2|NFAT5 nc|ENSG00000102908|O94916-2|NFAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7437133789062 2 570.744259 1139.47396 0.68934 0.00039343 -0.71887 -0.00041029 -0.029535 -1.6857E-05 570.743666688041 18.018 0.15062 15.396 15.272 15.423 -2.6215 11 9 2 0 0 0 0.019303 1 9438 9438 64.236 35.155 2 1131100 74947 2081 50013 51103 87367 87367 354 -0.09019327928240273 VYQQTSHMM 9 Unmodified _VYQQTSHMM_ 0 0 0 nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5 nc|ENSG00000102908|O94916-2|NFAT5 nc|ENSG00000102908|O94916-2|NFAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.751220703125 2 562.746802 1123.47905 0.68065 0.00038304 4.1749 0.0023494 4.8556 0.0027325 562.7488854103638 28.093 0.25128 24.945 24.826 25.077 -3.1482 25 13 2 0 0 0 0.022193 1 15616 15616 61.357 29.052 1 6453100 74948 2081 50013 51104 87368 87368 -0.07775024065608704 VYQRALCHF 9 Carbamidomethyl (C) _VYQRALC(Carbamidomethyl (C))HF_ VYQRALC(1)HF VYQRALC(74)HF 0 1 0 ENST00000378344.6_1_1:3544126-3544195:+|nuORF ENST00000378344.6_1_1:3544126-3544195:+|nuORF ENST00000378344.6_1_1:3544126-3544195:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 597.2972412109375 2 597.29785 1192.58115 NaN NaN NaN NaN NaN NaN NaN 34.528 1 30.433 29.933 30.933 -4.0951 0 0 0 0.023279 1 19914 19914 74.423 42.117 1 74949 12544 50014 51105 87369 87369 979 -0.007439899317205345 VYQSKPATL 9 Unmodified _VYQSKPATL_ 0 0 0 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 nc|ENSG00000141219|Q9BSJ5-2|MTNAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7818298339844 2 503.782025 1005.5495 -0.058832 -2.9638E-05 0.1894 9.5418E-05 0.13057 6.5779E-05 503.7821106806237 25.674 0.22825 25.674 25.55 25.779 0 21 10 3 0 0 0 0.044011 1 13169 13169 47.749 19.262 1 1768000 74950 5306 50015 51106 87370 87370 0.04694340586001999 VYQSLANLI 9 Unmodified _VYQSLANLI_ 0 0 0 nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF nc|ENSG00000107263|Q13905-2|RAPGEF1 nc|ENSG00000107263|Q13905-2|RAPGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7910461425781 2 510.78985 1019.56515 0.70518 0.0003602 1.2185 0.0006224 1.9237 0.0009826 510.7907336348913 80.414 0.30314 79.924 79.755 80.058 -0.48981 27 11 3 0 0 0 0.16226 1 44040 44040 26.884 11.036 1 920100 74951 2485 50016 51107 87371 87371 0.056146271030456774 VYQSLANLI 9 Unmodified _VYQSLANLI_ 0 0 0 nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF nc|ENSG00000107263|Q13905-2|RAPGEF1 nc|ENSG00000107263|Q13905-2|RAPGEF1 MSMS AL20221201_MKP_PDAC_01 4 510.7906799316406 2 510.78985 1019.56515 NaN NaN NaN NaN NaN NaN NaN 87.564 1 81.388 80.888 81.888 -6.1757 0 0 0 0.017438 1 57747 57747 81.89 28.315 1 74952 2485 50016 51107 87372 87372 0.056146271030456774 VYQSLANLI 9 Unmodified _VYQSLANLI_ 0 0 0 nc|ENSG00000107263|Q13905-2|RAPGEF1;nc|ENSG00000107263|Q13905|RAPGEF1;nc|ENSG00000107263|Q13905-4|RAPGEF1;nc|ENSG00000107263|Q13905-3|RAPGEF1;ENSG00000107263|ENST00000683357|RAPGEF1;ENST00000481260.1_1_9:134504569-134518759:-|nuORF nc|ENSG00000107263|Q13905-2|RAPGEF1 nc|ENSG00000107263|Q13905-2|RAPGEF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 510.78985 1019.56515 0.41686 0.00021293 0.36711 0.00018751 0.78396 0.00040044 510.79000648339195 79.83 0.28147 79.887 79.746 80.027 0.057144 -0.018507 -0.00037714 NaN 26.884 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1409500 74953 2485 50016 51107 0.056146271030456774 VYQVGGVTAYF 11 Unmodified _VYQVGGVTAYF_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3067626953125 2 602.305864 1202.59717 0.35908 0.00021628 0.4707 0.00028351 0.82978 0.00049978 602.3061495058556 76.075 0.39791 75.595 75.414 75.812 -0.47945 46 16 4 0 0 0 0.046614 2 41678 41583;41678 51.63 31.215 1 4789200 74954 6380 50017 51108 87373;87374 87374 0.0039799478618078865 VYQVGGVTAYF 11 Unmodified _VYQVGGVTAYF_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3071899414062 2 602.305864 1202.59717 0.082284 4.956E-05 1.0931 0.00065841 1.1754 0.00070797 602.3066884839674 75.582 0.36426 75.63 75.433 75.797 0.047943 51 16 4 0 0 0 0.12183 2 41712 41608;41712 39.95 14.959 1 9497200 74955 6380 50017 51108 87375;87376 87376 0.0039799478618078865 VYQVGGVTAYF 11 Unmodified _VYQVGGVTAYF_ 0 0 0 ENSG00000155287|ENST00000370495|SLC25A28;nc|ENSG00000155287|Q96A46-3|SLC25A28;nc|ENSG00000155287|Q96A46-2|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 ENSG00000155287|ENST00000370495|SLC25A28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3070678710938 2 602.305864 1202.59717 0.39531 0.0002381 0.35275 0.00021246 0.74805 0.00045056 602.3062084794027 83.451 0.46265 77.275 77.045 77.508 -6.1757 66 24 3 0 0 0 0.011312 3 54787 54787;54906;55037 66.457 33.012 1 63680000 74956 6380 50017 51108 87377;87378;87379 87377 0.0039799478618078865 VYRAEISEF 9 Unmodified _VYRAEISEF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2830810546875 2 557.282389 1112.55022 NaN NaN NaN NaN NaN NaN NaN 45.795 1 45.795 45.295 46.295 0 0 0 0 0.041018 1 24986 24986 61.602 33.973 1 74957 1378 50018 51109 87380 87380 -0.001548647649542545 VYRAEYINF 9 Unmodified _VYRAEYINF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.7957153320312 2 587.798206 1173.58186 0.23506 0.00013817 0.43424 0.00025525 0.6693 0.00039341 587.7984808064318 55.144 0.35017 54.666 54.491 54.841 -0.47798 42 16 4 0 0 0 0.044296 2 29862 29862;29961 47.594 29.448 1 26235000 74958 8967 50019 51110 87381;87382 87381 0.002011279889757134 VYRAEYINF 9 Unmodified _VYRAEYINF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.798828125 2 587.798206 1173.58186 0.50472 0.00029667 0.27359 0.00016082 0.77831 0.00045749 587.7982206323989 54.823 0.35654 54.756 54.523 54.88 -0.066936 23 17 2 0 0 0 0.023481 1 29783 29783 60.074 40.635 1 3797000 74959 8967 50019 51110 87383 87383 0.002011279889757134 VYRAEYINF 9 Unmodified _VYRAEYINF_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.7984008789062 2 587.798206 1173.58186 1.0412 0.00061203 0.15699 9.2279E-05 1.1982 0.00070431 587.798330748879 60.713 0.59203 54.566 54.292 54.884 -6.1478 69 31 3 0 0 0 0.021948 2 39179 39061;39179 61.602 36.203 1 85525000 74960 8967 50019 51110 87384;87385 87385 0.002011279889757134 VYRAVMRNT 9 Unmodified _VYRAVMRNT_ 0 0 0 nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1 nc|ENSG00000184216|P51617-4|IRAK1 nc|ENSG00000184216|P51617-4|IRAK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8664245605469 3 370.534326 1108.58115 1.2066 0.0004471 0.70513 0.00026127 1.9118 0.00070838 370.5345993816837 33.14 1.2975 29.284 28.319 29.617 -3.8562 215 76 4 0 0 0 0.54444 1 18417 18417 2.7352 0.99292 1 479840000 74961 9232 50020 51111 87386 87386 0.031200100683008714 VYRCHQVADY 10 Unmodified _VYRCHQVADY_ 0 0 0 REV__ENSG00000161217|ENST00000431016|PCYT1A REV__ENSG00000161217|ENST00000431016|PCYT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.289794921875 2 627.290222 1252.56589 -1.0023 -0.00062875 0.1832 0.00011492 -0.81913 -0.00051383 627.2904737039886 77.937 0.46831 77.454 77.143 77.611 -0.4826 63 34 2 0 0 0 0.66569 1 42768 42768 6.7232 0 1 6746100 + 74962 21589 50021 51112 87387 87387 -0.05028901519540341 VYRCRQDGGAF 11 Unmodified _VYRCRQDGGAF_ 0 0 0 ENST00000544255.5_1_6:160210471-160210519:-|nuORF ENST00000544255.5_1_6:160210471-160210519:-|nuORF ENST00000544255.5_1_6:160210471-160210519:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.5679321289062 3 424.536506 1270.58769 0.08525 3.6192E-05 1.2416 0.00052709 1.3268 0.00056328 424.5370886790445 51.148 0.24488 51.094 50.942 51.187 -0.053871 28 11 3 0 0 0 0.30139 1 27687 27687 4.7159 2.2811 1 5305700 74963 15078 50022 51113 87388 87388 -0.036780967709773904 VYRDLRWRFWW 11 Unmodified _VYRDLRWRFWW_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.2927856445312 3 561.628276 1681.863 NaN NaN NaN NaN NaN NaN NaN 27.071 1 27.1 26.6 27.6 0.028664 0 0 0 0.94337 1 14061 14061 0.094841 0.094841 1 + 74964 19597 50023 51114 87389 87389 0.04934303419349817 VYRNKDALSHF 11 Unmodified _VYRNKDALSHF_ 0 0 0 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.5700988769531 3 450.570204 1348.68878 0.55397 0.0002496 -0.10004 -4.5074E-05 0.45394 0.00020453 450.57018905833047 27.873 0.45587 24.725 24.547 25.003 -3.1482 69 24 4 0 0 0 0.014741 2 15432 15432;15550 62.78 42.369 1 59377000 74965 3007 50024 51115 87390;87391 87390 0.02838678203352174 VYRQDCETF 9 Carbamidomethyl (C) _VYRQDC(Carbamidomethyl (C))ETF_ VYRQDC(1)ETF VYRQDC(89)ETF 0 1 0 nc|ENSG00000134283|Q8NEY8-9|PPHLN1;ENSG00000134283|ENST00000358314|PPHLN1;nc|ENSG00000134283|Q8NEY8-2|PPHLN1;nc|ENSG00000134283|Q8NEY8|PPHLN1;nc|ENSG00000134283|Q8NEY8-6|PPHLN1;nc|ENSG00000134283|Q8NEY8-3|PPHLN1 nc|ENSG00000134283|Q8NEY8-9|PPHLN1 nc|ENSG00000134283|Q8NEY8-9|PPHLN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.26806640625 2 609.266413 1216.51827 0.57813 0.00035223 -0.025215 -1.5363E-05 0.55291 0.00033687 609.767204177754 31.276 0.31557 27.58 27.422 27.738 -3.6958 25 16 2 0 0 0 0.0086209 1 17676 17676 89.401 56.615 1 45999000 74966 4583 50025 51116 87392 87392 470 -0.08132600510430166 VYRQLHNSL 9 Unmodified _VYRQLHNSL_ 0 0 0 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 ENSG00000169641|ENST00000302291|LUZP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.2093811035156 3 377.208607 1128.60399 0.40734 0.00015365 0.61276 0.00023114 1.0201 0.00038479 377.2090076999966 25.826 0.32196 22.875 22.662 22.984 -2.9511 31 20 2 0 0 0 0.047788 1 14143 14143 42.312 25.747 1 11020000 74967 7895 50026 51117 87393 87393 0.04483352457418732 VYRQRCYY 8 Unmodified _VYRQRCYY_ 0 0 0 REV__nc|ENSG00000197558|A2VEC9|SSPOP REV__nc|ENSG00000197558|A2VEC9|SSPOP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.82177734375 2 575.776751 1149.53895 NaN NaN NaN NaN NaN NaN NaN 69.861 1 69.382 68.882 69.882 -0.47903 0 0 0 0.9706 1 38195 38195 6.3541 4.0514 1 + 74968 29889 50027 51118 87394 87394 -0.029839653400813404 VYRRGNLNF 9 Unmodified _VYRRGNLNF_ 0 0 0 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 ENSG00000241945|ENST00000291576|PWP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 380.1877136230469 3 380.208718 1137.60433 1.0865 0.00041311 -0.70903 -0.00026958 0.37751 0.00014353 380.20817902183654 32.745 0.39195 28.888 28.652 29.044 -3.8562 27 20 2 0 0 0 0.19994 1 18754 18754 8.1555 0 1 7214200 74969 10688 50028 51119 87395 87395 0.04102772177270708 VYRTVIEYY 9 Unmodified _VYRTVIEYY_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.3132934570312 2 603.313689 1204.61282 0.85686 0.00051695 -0.24828 -0.00014979 0.60858 0.00036716 603.3135422828705 50.502 0.3875 50.089 49.931 50.318 -0.41351 47 18 3 0 0 0 0.091924 1 27161 27161 34.932 20.094 1 12842000 74970 8322 50029 51120 87396 87396 0.0187028130321778 VYRTVIEYY 9 Unmodified _VYRTVIEYY_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.31494140625 2 603.313689 1204.61282 1.3123 0.00079173 0.29881 0.00018027 1.6111 0.000972 603.3137504459321 50.105 0.24377 50.056 49.967 50.21 -0.048824 19 11 2 0 0 0 0.062454 1 27105 27105 41.956 28.913 1 3191100 74971 8322 50029 51120 87397 87397 0.0187028130321778 VYRTVIEYY 9 Unmodified _VYRTVIEYY_ 0 0 0 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 ENSG00000173418|ENST00000334982|NAA20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.814208984375 2 603.313689 1204.61282 -0.21096 -0.00012727 -0.78006 -0.00047062 -0.99102 -0.00059789 603.3133258246557 55.962 0.35126 50.041 49.861 50.212 -5.9211 45 20 3 0 0 0 0.0086209 2 35717 35582;35717 89.401 64.001 1 49698000 74972 8322 50029 51120 87398;87399 87399 0.0187028130321778 VYRVYVATF 9 Unmodified _VYRVYVATF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.305419921875 2 559.305667 1116.59678 1.0375 0.00058029 0.014884 8.3245E-06 1.0524 0.00058862 559.3055119242821 58.345 0.35535 58.285 58.097 58.452 -0.060719 62 17 4 0 0 0 0.0083938 2 31710 31710;31808 108 81.113 1 85129000 74973 9928 50030 51121 87400;87401 87400 0.04314619856972968 VYRVYVATF 9 Unmodified _VYRVYVATF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.3080444335938 2 559.305667 1116.59678 1.6077 0.00089922 3.0396 0.0017001 4.6474 0.0025993 559.3075290216486 64.18 0.55199 58.004 57.918 58.47 -6.1757 53 29 3 0 0 0 0.013323 2 41534 41534;41659 71.134 45.734 1 91333000 74974 9928 50030 51121 87402;87403 87402 0.04314619856972968 VYRVYVATF 9 Unmodified _VYRVYVATF_ 0 0 0 nc|ENSG00000197217|Q9Y227-2|ENTPD4;ENSG00000197217|ENST00000358689|ENTPD4;ENST00000523958.5_1_8:23291828-23307413:-|nuORF nc|ENSG00000197217|Q9Y227-2|ENTPD4 nc|ENSG00000197217|Q9Y227-2|ENTPD4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 559.305667 1116.59678 1.2654 0.00070773 -0.61306 -0.00034289 0.6523 0.00036484 559.3056948873098 64.734 0.30276 58.559 58.431 58.734 -6.1757 0.13694 -0.00060947 NaN 108 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 7181000 74975 9928 50030 51121 0.04314619856972968 VYSAAILEYL 10 Unmodified _VYSAAILEYL_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2 ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.3109741210938 2 571.310615 1140.60668 0.52537 0.00030015 -0.62063 -0.00035457 -0.095266 -5.4426E-05 571.3101009336624 97.16 0.35072 96.917 96.748 97.099 -0.24277 38 15 3 0 0 0 0.60623 2 53025 53025;53121 10.824 4.1008 1 2243500 74976 14604 50031 51122 87404;87405 87404 0.041997630717105494 VYSAAILEYL 10 Unmodified _VYSAAILEYL_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-5|H2AZ2 ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.31201171875 2 571.310615 1140.60668 1.2712 0.00072625 -0.33132 -0.00018929 0.93987 0.00053696 571.310245422051 100.33 0.19598 94.157 94.058 94.254 -6.1757 27 12 3 0 0 0 0.051739 1 67031 67031 57.471 28.39 1 176560000 74977 14604 50031 51122 87406 87406 0.041997630717105494 VYSACKAE 8 Unmodified _VYSACKAE_ 0 0 0 ENSG00000114166|ENST00000263754|KAT2B;ENST00000426228.1_1_3:20082197-20142489:+|nuORF ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 435.7059936523438 2 435.704928 869.395304 0.21504 9.3693E-05 1.2942 0.00056388 1.5092 0.00065757 435.70543578870667 63.79 0.40749 63.79 63.567 63.974 0 31 16 3 0 0 0 0.80505 1 35545 35545 3.5965 1.2938 1 2740200 74978 3022 50032 51123 87407 87407 -0.04461812171030033 VYSACKAE 8 Unmodified _VYSACKAE_ 0 0 0 ENSG00000114166|ENST00000263754|KAT2B;ENST00000426228.1_1_3:20082197-20142489:+|nuORF ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.704928 869.395304 0.64579 0.00028137 1.3742 0.00059876 2.02 0.00088013 435.70549521641254 64.253 0.3774 63.768 63.572 63.949 -0.48512 -0.011008 2.7559E-05 NaN 3.5965 38 17 3 NaN NaN NaN NaN 0 NaN NaN 0 4451500 74979 3022 50032 51123 -0.04461812171030033 VYSAGTHPLGR 11 Unmodified _VYSAGTHPLGR_ 0 0 0 REV__ENST00000585457.5_1_17:42254573-42254840:-|nuORF REV__ENST00000585457.5_1_17:42254573-42254840:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.8048706054688 2 579.306729 1156.59891 1.1314 0.00065545 -2.142 -0.0012409 -1.0106 -0.00058543 579.8068006622924 50.65 0.33269 50.596 50.47 50.803 -0.053871 44 16 4 0 0 0 0.46131 1 27375 27375 18.373 0.22675 1 5736400 + 74980 29095 50033 51124 87408 87408 0.026870485947938505 VYSAGVYRL 9 Unmodified _VYSAGVYRL_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.281494140625 2 514.282192 1026.54983 0.056899 2.9262E-05 -0.14896 -7.6609E-05 -0.092063 -4.7346E-05 514.2819570593571 45.866 0.23804 45.542 45.46 45.698 -0.32425 28 13 3 0 0 0 0.0026776 1 24506 24506 128.37 77.51 1 24685000 74981 8579 50034 51125 87409 87409 0.037617603058379245 VYSAGVYRL 9 Unmodified _VYSAGVYRL_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.281982421875 2 514.282192 1026.54983 0.30116 0.00015488 -0.47048 -0.00024196 -0.16932 -8.7079E-05 514.281937150699 45.577 0.24146 45.549 45.439 45.681 -0.028011 24 12 3 0 0 0 0.0082485 1 24469 24469 96.285 45.43 1 8488400 74982 8579 50034 51125 87410 87410 0.037617603058379245 VYSAGVYRL 9 Unmodified _VYSAGVYRL_ 0 0 0 nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 nc|ENSG00000176248|Q9UJX6-2|ANAPC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.282470703125 2 514.282192 1026.54983 0.96861 0.00049814 0.20303 0.00010442 1.1716 0.00060256 514.28238788486 50.808 0.45614 45.159 44.941 45.397 -5.649 67 27 3 0 0 0 0.0090948 2 31991 31864;31991 85.272 34.417 1 115880000 74983 8579 50034 51125 87411;87412 87412 0.037617603058379245 VYSALTCHL 9 Unmodified _VYSALTCHL_ 0 0 0 ENSG00000077238|ENST00000395762|IL4R;nc|ENSG00000077238|P24394-3|IL4R ENSG00000077238|ENST00000395762|IL4R ENSG00000077238|ENST00000395762|IL4R MSMS AL20221201_MKP_PDAC_01 4 503.7567749023438 2 503.754953 1005.49535 NaN NaN NaN NaN NaN NaN NaN 51.181 1 45.532 45.032 46.032 -5.649 0 0 0 0.10545 1 32184 32184 42.095 13.608 1 74984 1210 50035 51126 87413 87413 -0.007175748372333146 VYSCGARVGFF 11 Carbamidomethyl (C) _VYSC(Carbamidomethyl (C))GARVGFF_ VYSC(1)GARVGFF VYSC(69)GARVGFF 0 1 0 nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 nc|ENSG00000197142|Q9ULC5-4|ACSL5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.8043823242188 2 631.802965 1261.59138 1.2564 0.00079378 -0.023892 -1.5095E-05 1.2325 0.00077869 631.8032357996326 62.996 0.33331 56.82 56.563 56.896 -6.1757 29 16 2 0 0 0 0.0086238 1 40599 40599 69.338 27.499 1 12066000 74985 9914 50036 51127 87414 87414 905 -0.028954269971336544 VYSDIVGKI 9 Unmodified _VYSDIVGKI_ 0 0 0 nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2848815917969 2 497.2844 992.554247 0.47864 0.00023802 0.25411 0.00012637 0.73275 0.00036438 497.2844824415083 50.869 0.28086 50.455 50.338 50.619 -0.41351 25 13 2 0 0 0 0.032796 1 27404 27404 53.833 21.527 1 3695000 74986 6831 50037 51128 87415 87415 0.05767224728754172 VYSDIVGKI 9 Unmodified _VYSDIVGKI_ 0 0 0 nc|ENSG00000162065|Q9ULP9-2|TBC1D24;ENSG00000162065|ENST00000646147|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 nc|ENSG00000162065|Q9ULP9-2|TBC1D24 MSMS AL20221201_MKP_PDAC_01 4 497.284423828125 2 497.2844 992.554247 NaN NaN NaN NaN NaN NaN NaN 56.838 1 50.861 50.361 51.361 -5.9769 0 0 0 0.041018 1 36303 36303 61.602 17.744 1 74987 6831 50037 51128 87416 87416 0.05767224728754172 VYSDKLWIF 9 Unmodified _VYSDKLWIF_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.81396484375 2 585.813325 1169.6121 0.40872 0.00023944 -0.12325 -7.2199E-05 0.28548 0.00016724 585.8130018203468 84.659 0.25095 84.159 83.976 84.227 -0.49961 20 11 2 0 0 0 0.49272 1 46272 46272 7.9102 0.62092 1 1371700 74988 1724 50038 51129 87417 87417 0.03407486654191416 VYSDKLWIF 9 Unmodified _VYSDKLWIF_ 0 0 0 ENSG00000099949|ENST00000646124|LZTR1;ENST00000479606.5_1_22:21333956-21351634:+|nuORF ENSG00000099949|ENST00000646124|LZTR1 ENSG00000099949|ENST00000646124|LZTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.8131713867188 2 585.813325 1169.6121 0.14077 8.2464E-05 0.025657 1.503E-05 0.16643 9.7494E-05 585.8132669178127 83.93 0.31227 83.993 83.782 84.094 0.063171 38 12 4 0 0 0 0.05483 1 46395 46395 43.772 11.467 1 58935000 74989 1724 50038 51129 87418 87418 0.03407486654191416 VYSDLHAFYY 10 Unmodified _VYSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.29541015625 2 639.295496 1276.57644 -0.39693 -0.00025376 0.35156 0.00022475 -0.045365 -2.9002E-05 639.2957534356447 60.727 0.22277 60.238 60.11 60.332 -0.48932 26 10 3 0 0 0 0.1028 1 33048 33048 46.021 32.978 1 8399100 74990 9331 50039 51130 87419 87419 -0.050785955934770755 VYSDLHAFYY 10 Unmodified _VYSDLHAFYY_ 0 0 0 nc|ENSG00000185090|Q5VSG8-3|MANEAL;ENSG00000185090|ENST00000373045|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL nc|ENSG00000185090|Q5VSG8-3|MANEAL MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.296142578125 2 639.295496 1276.57644 0.45109 0.00028838 0.2101 0.00013432 0.6612 0.0004227 639.295665325583 66.408 0.3468 60.232 60.045 60.392 -6.1757 33 18 2 0 0 0 0.00060102 2 43239 43110;43239 115.69 97.546 1 14066000 74991 9331 50039 51130 87420;87421 87421 -0.050785955934770755 VYSDYLQTI 9 Unmodified _VYSDYLQTI_ 0 0 0 ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B ENSG00000179715|ENST00000546455|PCED1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2774658203125 2 551.276772 1100.53899 0.51422 0.00028348 -0.47167 -0.00026002 0.042549 2.3456E-05 551.276778778112 64.864 0.30182 64.379 64.208 64.51 -0.48512 34 13 3 0 0 0 0.2001 1 35393 35393 23.148 6.2061 1 2527400 74992 8855 50040 51131 87422 87422 -0.0072568685909573105 VYSEAARVLQF 11 Unmodified _VYSEAARVLQF_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8440551757812 2 641.843145 1281.67174 0.36295 0.00023296 -0.34605 -0.00022211 0.016892 1.0842E-05 641.8427602757489 61.699 0.25756 61.666 61.514 61.772 -0.032787 36 12 4 0 0 0 4.966E-15 1 33649 33649 135.86 90.164 1 9598600 74993 6490 50041 51132 87423 87423 0.04216757597555443 VYSEAARVLQF 11 Unmodified _VYSEAARVLQF_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 641.843145 1281.67174 0.38139 0.00024479 0.70798 0.00045441 1.0894 0.00069921 641.8434347622297 62.066 0.23481 61.579 61.469 61.704 -0.48764 0.034698 0.00078365 NaN 135.86 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3034200 74994 6490 50041 51132 0.04216757597555443 VYSEAARVLQF 11 Unmodified _VYSEAARVLQF_ 0 0 0 nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF nc|ENSG00000156958|Q01415-2|GALK2 nc|ENSG00000156958|Q01415-2|GALK2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 641.843145 1281.67174 0.4916 0.00031553 1.4651 0.00094035 1.9567 0.0012559 641.8427963849681 67.563 0.078636 61.387 61.339 61.418 -6.1757 -0.15689 0.0017555 NaN 135.86 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 6689700 74995 6490 50041 51132 0.04216757597555443 VYSEGQSETIL 11 Unmodified _VYSEGQSETIL_ 0 0 0 ENSG00000162482|ENST00000361640|AKR7A3 ENSG00000162482|ENST00000361640|AKR7A3 ENSG00000162482|ENST00000361640|AKR7A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.7652587890625 2 613.300975 1224.5874 0.602 0.00036921 -2.1359 -0.00131 -1.5339 -0.00094077 613.299992345132 46.539 0.21999 46.539 46.436 46.656 0 15 9 2 0 0 0 0.30526 1 25384 25384 2.7352 1.0826 1 999260 74996 6865 50042 51133 87424 87424 -0.015912380098370704 VYSEKVMHMF 10 2 Oxidation (M) _VYSEKVM(Oxidation (M))HM(Oxidation (M))F_ VYSEKVM(1)HM(1)F VYSEKVM(42)HM(42)F 0 0 2 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8667602539062 3 434.866753 1301.57843 -0.32205 -0.00014005 -0.47933 -0.00020845 -0.80138 -0.00034849 434.8667128695928 25.542 0.37044 25.542 25.283 25.654 0 70 17 5 0 0 0 0.13297 1 13111 13111 41.956 37.427 1 21708000 74997 9835 50043 51134 87425 87425 1579;1580 -0.06029626171516611 VYSEKVMHMF 10 2 Oxidation (M) _VYSEKVM(Oxidation (M))HM(Oxidation (M))F_ VYSEKVM(1)HM(1)F VYSEKVM(61)HM(61)F 0 0 2 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8670654296875 3 434.866753 1301.57843 NaN NaN NaN NaN NaN NaN NaN 25.879 1 25.862 25.362 26.362 -0.017006 0 0 0 0.035368 1 13290 13290 61.09 44.815 1 74998 9835 50043 51134 87426 87426 1579;1580 -0.06029626171516611 VYSEKVMHMF 10 Oxidation (M) _VYSEKVMHM(Oxidation (M))F_ VYSEKVM(0.049)HM(0.951)F VYSEKVM(-13)HM(13)F 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 429.53466796875 3 429.535115 1285.58352 -0.43841 -0.00018831 -0.98957 -0.00042505 -1.428 -0.00061337 429.5348068135234 35.668 0.21334 35.446 35.333 35.546 -0.2224 27 9 4 0 0 0 0.13008 1 18678 18678 42.312 36.078 2 10581000 74999 9835 50043 51135 87427 87427 1579;1580 -0.047853223089305175 VYSEKVMHMF 10 Oxidation (M) _VYSEKVMHM(Oxidation (M))F_ VYSEKVMHM(1)F VYSEKVM(-41)HM(41)F 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.302734375 2 643.799034 1285.58352 0.73955 0.00047612 0.60164 0.00038733 1.3412 0.00086346 643.7994349682856 39.235 0.28906 34.784 34.675 34.964 -4.4509 29 17 2 0 0 0 2.0345E-07 1 23264 23264 140.63 91.079 2 12551000 75000 9835 50043 51135 87428 87428 1579;1580 -0.047853223089305175 VYSEKVMHMF 10 Oxidation (M) _VYSEKVMHM(Oxidation (M))F_ VYSEKVM(0.002)HM(0.998)F VYSEKVM(-26)HM(26)F 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.800048828125 2 643.799034 1285.58352 0.16385 0.00010548 -0.18516 -0.00011921 -0.021316 -1.3723E-05 643.7990209987024 39.83 0.23094 35.3 35.155 35.386 -4.5294 26 14 2 0 0 0 0.0086576 1 23645 23645 90.135 63.867 2 22997000 75001 9835 50043 51135 87429 87429 1579;1580 -0.047853223089305175 VYSEKVMHMF 10 Oxidation (M) _VYSEKVM(Oxidation (M))HMF_ VYSEKVM(1)HMF VYSEKVM(34)HM(-34)F 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.7994384765625 2 643.799034 1285.58352 0.82387 0.00053041 -0.78814 -0.0005074 0.035737 2.3007E-05 643.7986586672163 41.099 0.44344 36.492 36.227 36.671 -4.6079 52 27 2 0 0 0 0.012329 2 24534 24534;24673 83.429 65.056 2 21873000 75002 9835 50043 51135 87430;87431 87430 1579;1580 -0.047853223089305175 VYSEKVMHMF 10 Oxidation (M) _VYSEKVMHM(Oxidation (M))F_ 0 0 1 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 643.799034 1285.58352 -0.51974 -0.00033461 1.1203 0.00072122 0.60051 0.00038661 643.7994294241031 35.106 0.12943 34.883 34.808 34.938 -0.2224 0.049666 0.0004245 NaN 140.63 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 846500 75003 9835 50043 51135 1579;1580 -0.047853223089305175 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.2037963867188 3 424.203477 1269.5886 0.3569 0.0001514 0.20178 8.5595E-05 0.55867 0.00023699 424.53774539233166 48.548 0.17574 48.176 48.102 48.278 -0.37172 13 8 2 0 0 0 0.24625 1 26064 26064 26.021 12.406 1 3799200 75004 9835 50043 51136 87432 87432 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2037658691406 3 424.203477 1269.5886 0.38753 0.00016439 0.39925 0.00016937 0.78678 0.00033376 424.2037145327655 48.28 0.28111 48.241 48.083 48.364 -0.038643 22 13 2 0 0 0 0.24625 1 26029 26029 20.581 11.605 1 3022200 75005 9835 50043 51136 87433 87433 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2037658691406 3 424.203477 1269.5886 1.3398 0.00056834 -0.74491 -0.00031599 0.59488 0.00025235 424.2033749106436 53.586 0.47857 47.781 47.529 48.008 -5.8042 89 30 4 0 0 0 0.10424 3 33899 33769;33899;34041 46.022 37.768 1 172030000 75006 9835 50043 51136 87434;87435;87436 87435 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.801513671875 2 635.801577 1269.5886 0.92399 0.00058748 -1.3714 -0.00087194 -0.44742 -0.00028447 635.8009220031256 53.585 0.39568 47.781 47.562 47.958 -5.8042 60 25 3 0 0 0 3.9249E-05 2 33946 33809;33946 121.53 95.266 1 44465000 75007 9835 50043 51136 87437;87438 87438 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 424.2038879394531 3 424.203477 1269.5886 NaN NaN NaN NaN NaN NaN NaN 66.755 1 60.579 60.079 61.079 -6.1757 0 0 0 0.029584 1 43433 43433 46.022 34.504 1 75008 9835 50043 51136 87439 87439 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 424.2045288085938 3 424.203477 1269.5886 NaN NaN NaN NaN NaN NaN NaN 66.945 1 60.77 60.27 61.27 -6.1757 0 0 0 0.11618 1 43574 43574 49.527 38.009 1 75009 9835 50043 51136 87440 87440 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 424.2041015625 3 424.203477 1269.5886 NaN NaN NaN NaN NaN NaN NaN 67.157 1 60.982 60.482 61.482 -6.1757 0 0 0 0.21708 1 43730 43730 42.312 23.939 1 75010 9835 50043 51136 87441 87441 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 424.2043151855469 3 424.203477 1269.5886 NaN NaN NaN NaN NaN NaN NaN 67.377 1 61.201 60.701 61.701 -6.1757 0 0 0 0.3465 1 43886 43886 29.437 20.461 1 75011 9835 50043 51136 87442 87442 -0.03541018446298949 VYSEKVMHMF 10 Unmodified _VYSEKVMHMF_ 0 0 0 nc|ENSG00000196535|Q92614-2|MYO18A;nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A nc|ENSG00000196535|Q92614-2|MYO18A MSMS AL20221201_MKP_PDAC_01 4 424.2054138183594 3 424.203477 1269.5886 NaN NaN NaN NaN NaN NaN NaN 67.653 1 61.477 60.977 61.977 -6.1757 0 0 0 0.3465 1 44085 44085 23.801 14.825 1 75012 9835 50043 51136 87443 87443 -0.03541018446298949 VYSETVDLIKF 11 Unmodified _VYSETVDLIKF_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.354248046875 2 657.353011 1312.69147 0.73291 0.00048178 -1.439 -0.00094595 -0.70612 -0.00046417 657.3520413513932 73.741 0.33813 73.265 73.092 73.43 -0.47588 34 15 3 0 0 0 0.010729 2 40321 40321;40420 67.081 46.666 1 6591700 75013 8226 50044 51137 87444;87445 87444 0.04763088817639982 VYSETVDLIKF 11 Unmodified _VYSETVDLIKF_ 0 0 0 nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1 nc|ENSG00000172493|P51825|AFF1 nc|ENSG00000172493|P51825|AFF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 657.353011 1312.69147 0.5423 0.00035648 -2.1929 -0.0014415 -1.6506 -0.001085 657.3523842624428 73.213 0.23566 73.255 73.146 73.381 0.041733 -0.0052745 -0.00087562 NaN 67.081 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1905800 75014 8226 50044 51137 0.04763088817639982 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.273681640625 2 589.274229 1176.53391 0.11093 6.5365E-05 -1.0577 -0.00062327 -0.94676 -0.0005579 589.2736169033849 63.461 0.46617 63.461 63.219 63.685 0 81 23 4 0 0 0 0.11654 2 35312 35312;35417 61.357 29.052 1 75826000 75015 9402 50045 51138 87446;87447 87446 -0.04729990721716604 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2748413085938 2 589.274229 1176.53391 0.54567 0.00032155 -0.53971 -0.00031804 0.0059557 3.5095E-06 589.2739189459872 64.035 0.45832 63.55 63.386 63.844 -0.48512 81 23 5 0 0 0 0.078742 2 34978 34869;34978 71.134 50.68 1 37340000 75016 9402 50045 51138 87448;87449 87449 -0.04729990721716604 VYSEVAAYEF 10 Unmodified _VYSEVAAYEF_ 0 0 0 ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENSG00000185721|ENST00000331457|DRG1 ENST00000433341.5_1_22:31795606-31819296:+|nuORF ENST00000433341.5_1_22:31795606-31819296:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2742919921875 2 589.274229 1176.53391 0.9103 0.00053642 -0.1563 -9.2101E-05 0.75401 0.00044432 589.2742171574699 70.622 0.56293 64.446 64.186 64.749 -6.1757 79 29 3 0 0 0 0.11654 3 46044 46044;46164;46289 61.357 40.904 1 219200000 75017 9402 50045 51138 87450;87451;87452 87450 -0.04729990721716604 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2890625 2 559.287474 1116.5604 0.83505 0.00046703 -0.18048 -0.00010094 0.65457 0.00036609 559.2874467223427 67.92 0.30585 67.437 67.232 67.538 -0.48218 35 13 3 0 0 0 0.0082475 1 37061 37061 92.653 52.696 1 12897000 75018 6205 50046 51139 87453 87453 0.006777429603062046 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2882080078125 2 559.287474 1116.5604 0.72814 0.00040724 -0.36837 -0.00020602 0.35977 0.00020122 559.2872430451099 67.369 0.39396 67.387 67.178 67.572 0.018028 54 19 3 0 0 0 0.0094097 2 36908 36908;37017 82.529 50.224 1 92399000 75019 6205 50046 51139 87454;87455 87454 0.006777429603062046 VYSFGFERL 9 Unmodified _VYSFGFERL_ 0 0 0 nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 nc|ENSG00000152683|Q6NXT4-4|SLC30A6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2886962890625 2 559.287474 1116.5604 0.68707 0.00038427 1.4055 0.00078605 2.0925 0.0011703 559.2883924371562 76.791 1.5182 70.615 69.634 71.152 -6.1757 125 83 2 0 0 0 0.0059585 8 49853 49736;49853;49964;50081;50203;50313;50430;50554 114.65 74.692 1 37997000 75020 6205 50046 51139 87456;87457;87458;87459;87460;87461;87462;87463 87457 0.006777429603062046 VYSFRSEQF 9 Unmodified _VYSFRSEQF_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2823486328125 2 581.780013 1161.54547 0.11814 6.8732E-05 -0.1141 -6.6381E-05 0.0040416 2.3513E-06 582.2812128701372 45.906 0.18833 45.581 45.51 45.698 -0.32425 16 9 2 0 0 0 0.010301 1 24561 24561 79.596 37.757 1 6770700 75021 3047 50047 51140 87464 87464 -0.028837489077204737 VYSFVTPTF 9 Unmodified _VYSFVTPTF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7698974609375 2 530.771126 1059.5277 0.69237 0.00036749 -0.6557 -0.00034803 0.036671 1.9464E-05 530.7707868655289 81.408 0.315 80.916 80.75 81.065 -0.49247 24 13 2 0 0 0 0.2001 2 44541 44541;44648 23.148 6.2061 1 837250 75022 4271 50048 51141 87465;87466 87465 0.00031535837410956447 VYSFVTPTF 9 Unmodified _VYSFVTPTF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.7703247070312 2 530.771126 1059.5277 0.66219 0.00035147 -0.2074 -0.00011008 0.45479 0.00024139 530.7707857844285 80.805 0.41018 80.863 80.652 81.062 0.057587 38 15 4 0 0 0 0.023164 2 44650 44650;44764 60.39 31.903 1 11209000 75023 4271 50048 51141 87467;87468 87467 0.00031535837410956447 VYSFVTPTF 9 Unmodified _VYSFVTPTF_ 0 0 0 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 ENSG00000130827|ENST00000369682|PLXNA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7719116210938 2 530.771126 1059.5277 1.0003 0.00053093 0.38956 0.00020677 1.3899 0.0007377 530.7710866352512 88.718 0.6797 82.542 82.24 82.92 -6.1757 92 37 3 0 0 0 0.010877 3 58442 58442;58567;58690 77.984 54.836 1 61091000 75024 4271 50048 51141 87469;87470;87471 87469 0.00031535837410956447 VYSFYEKGPL 10 Unmodified _VYSFYEKGPL_ 0 0 0 ENST00000595833.1_1_19:21203606-21216480:+|nuORF;ENSG00000118620|ENST00000261560|ZNF430 ENST00000595833.1_1_19:21203606-21216480:+|nuORF ENST00000595833.1_1_19:21203606-21216480:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8084106445312 2 601.808239 1201.60193 -0.00065386 -3.935E-07 0.55832 0.000336 0.55766 0.00033561 601.8085504376071 76.818 0.35655 76.868 76.676 77.033 0.05011 28 14 2 0 0 0 0.42143 1 42437 42437 20.415 1.1575 1 16371000 75025 3384 50049 51142 87472 87472 0.009188789289510169 VYSGGVYLF 9 Unmodified _VYSGGVYLF_ 0 0 0 ENST00000587406.5_1_19:19232302-19249261:-|nuORF;ENST00000589448.5_1_19:19230741-19243387:-|nuORF;ENSG00000064545|ENST00000162044|TMEM161A ENST00000587406.5_1_19:19232302-19249261:-|nuORF ENST00000587406.5_1_19:19232302-19249261:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1004.511413574219 1 1004.50876 1003.50148 0.27717 0.00027842 0.54544 0.0005479 0.82261 0.00082632 1004.509481262669 79.028 0.35852 78.542 78.372 78.73 -0.48596 26 15 2 0 0 0 0.052168 1 43253 43253 44.407 2.5674 1 2115900 75026 876 50050 51143 87473 87473 -0.00012733334040149202 VYSGLLEK 8 Unmodified _VYSGLLEK_ 0 0 0 REV__ENSG00000175087|ENST00000374269|PDIK1L REV__ENSG00000175087|ENST00000374269|PDIK1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 908.5083618164062 1 908.50876 907.501483 0.23898 0.00021712 -0.40368 -0.00036675 -0.16469 -0.00014963 908.5081738897583 73.275 0.32203 72.8 72.63 72.952 -0.47588 25 14 2 0 0 0 0.72953 1 40146 40146 14.582 1.0738 1 2012900 + 75027 22840 50051 51144 87474 87474 0.04403266665940464 VYSGWWKGDK 10 Unmodified _VYSGWWKGDK_ 0 0 0 nc|ENSG00000139714|Q6PF18-2|MORN3;ENSG00000139714|ENST00000355329|MORN3 nc|ENSG00000139714|Q6PF18-2|MORN3 nc|ENSG00000139714|Q6PF18-2|MORN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5387268066406 3 409.204862 1224.59276 -0.3928 -0.00016074 -0.84338 -0.00034511 -1.2362 -0.00050585 409.20448153062944 36.058 0.39772 36.083 35.928 36.326 0.024967 40 17 3 0 0 0 0.52888 1 19059 19059 12.873 6.2491 1 11419000 75028 5181 50052 51145 87475 87475 -0.01055469636730777 VYSHFNETL 9 Unmodified _VYSHFNETL_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2664794921875 2 555.266739 1108.51892 0.20509 0.00011388 2.9861 0.0016581 3.1912 0.001772 555.2678886649551 40.462 0.62933 40.462 40.11 40.739 0 67 32 4 0 0 0 0.094149 1 21773 21773 34.402 15.04 1 13459000 75029 2112 50053 51146 87476 87476 -0.030994377990509747 VYSHFNETL 9 Unmodified _VYSHFNETL_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.266845703125 2 555.266739 1108.51892 0.61851 0.00034344 0.1725 9.5781E-05 0.79101 0.00043922 555.2668025318378 40.915 0.21465 40.612 40.482 40.697 -0.30304 17 10 2 0 0 0 0.017075 1 21643 21643 66.457 28.483 1 5596300 75030 2112 50053 51146 87477 87477 -0.030994377990509747 VYSHFNETL 9 Unmodified _VYSHFNETL_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.7942504882812 2 555.266739 1108.51892 0.79529 0.0004416 2.0996 0.0011659 2.8949 0.0016075 555.2668473188979 45.878 0.46622 40.923 40.682 41.148 -4.9549 76 30 3 0 0 0 0.18118 1 28147 28147 19.257 9.1831 1 32140000 75031 2112 50053 51146 87478 87478 -0.030994377990509747 VYSHGTPDAE 10 Unmodified _VYSHGTPDAE_ 0 0 0 REV__ENSG00000198681|ENST00000356661|MAGEA1 REV__ENSG00000198681|ENST00000356661|MAGEA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2374267578125 2 538.238178 1074.4618 0.32838 0.00017675 -1.2204 -0.00065688 -0.89204 -0.00048013 538.2373227251203 89.869 0.41416 89.367 89.172 89.586 -0.50172 46 21 3 0 0 0 0.71123 1 49179 49179 1.6526 0.17072 1 1232400 + 75032 24039 50054 51147 87479 87479 -0.07244905075435781 VYSHLKSVL 9 Unmodified _VYSHLKSVL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3052978515625 2 523.305667 1044.59678 0.093842 4.9108E-05 0.14759 7.7234E-05 0.24143 0.00012634 523.3057311055796 34.106 0.25256 34.135 33.973 34.225 0.028934 18 11 2 0 0 0 0.024189 1 17980 17980 59.368 36.632 1 2051600 75033 3985 50055 51148 87480 87480 0.0762661985700106 VYSHLKSVL 9 Unmodified _VYSHLKSVL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.305667 1044.59678 -0.35884 -0.00018778 0.32098 0.00016797 -0.037852 -1.9808E-05 523.3053178923751 34.438 0.14079 34.247 34.13 34.271 -0.19131 0.11174 0.00039317 NaN 59.368 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1411000 75034 3985 50055 51148 0.0762661985700106 VYSHLKSVL 9 Unmodified _VYSHLKSVL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 523.305667 1044.59678 0.64263 0.00033629 -0.18046 -9.4433E-05 0.46218 0.00024186 523.3054791429116 38.392 0.37838 34.023 33.855 34.234 -4.3689 -0.11165 -0.00013164 NaN 59.368 47 23 3 NaN NaN NaN NaN 0 NaN NaN 0 26068000 75035 3985 50055 51148 0.0762661985700106 VYSHLPDLL 9 Unmodified _VYSHLPDLL_ 0 0 0 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7902221679688 2 528.78985 1055.56515 0.18253 9.6521E-05 0.24906 0.0001317 0.4316 0.00022822 528.7899857336473 66.788 0.43535 66.305 66.11 66.546 -0.48323 52 20 3 0 0 0 0.012148 2 36528 36418;36528 74.423 50.402 1 25869000 75036 5752 50056 51149 87481;87482 87482 0.03958627103043 VYSHLPDLL 9 Unmodified _VYSHLPDLL_ 0 0 0 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7903442382812 2 528.78985 1055.56515 1.0353 0.00054748 0.20662 0.00010926 1.242 0.00065674 528.7899365270041 66.322 0.27518 66.331 66.183 66.459 0.0095596 36 13 3 0 0 0 0.070838 1 36388 36388 39.957 3.9131 1 5535000 75037 5752 50056 51149 87483 87483 0.03958627103043 VYSHVIQKL 9 Unmodified _VYSHVIQKL_ 0 0 0 ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.881591796875 3 362.88172 1085.62333 0.063878 2.318E-05 0.23368 8.4799E-05 0.29756 0.00010798 362.88186146018717 31.778 0.19694 31.648 31.548 31.745 -0.12915 11 7 2 0 0 0 0.23158 1 16532 16532 31.268 24.167 1 1098200 75038 4670 50057 51150 87484 87484 0.08394308748324875 VYSHVIQKL 9 Unmodified _VYSHVIQKL_ 0 0 0 ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8818359375 3 362.88172 1085.62333 1.8289 0.00066367 -0.56076 -0.00020349 1.2681 0.00046018 362.88139643084696 35.744 0.46932 31.552 31.286 31.755 -4.1928 63 28 3 0 0 0 0.23158 1 20749 20749 24.991 13.496 1 23315000 75039 4670 50057 51150 87485 87485 0.08394308748324875 VYSHVIQKL 9 Unmodified _VYSHVIQKL_ 0 0 0 ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS ENSG00000135094|ENST00000257549|SDS MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 362.88172 1085.62333 -0.30315 -0.00011001 -0.96093 -0.00034871 -1.2641 -0.00045871 362.8813297580914 31.594 0.084841 31.624 31.564 31.648 0.030106 0.016256 -0.00030384 NaN 31.268 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1349600 75040 4670 50057 51150 0.08394308748324875 VYSIINGIVF 10 Unmodified _VYSIINGIVF_ 0 0 0 ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 ENSG00000163812|ENST00000424952|ZDHHC3 ENSG00000163812|ENST00000424952|ZDHHC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8240356445312 2 562.82115 1123.62775 NaN NaN NaN NaN NaN NaN NaN 99.012 1 98.984 98.484 99.484 -0.028282 0 0 0 0.021206 1 54991 54991 81.613 43.639 1 75041 7075 50058 51151 87486 87486 0.07087773171247136 VYSIINGIVF 10 Unmodified _VYSIINGIVF_ 0 0 0 ENSG00000163812|ENST00000424952|ZDHHC3;nc|ENSG00000163812|Q9NYG2-2|ZDHHC3 ENSG00000163812|ENST00000424952|ZDHHC3 ENSG00000163812|ENST00000424952|ZDHHC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8225708007812 2 562.82115 1123.62775 1.6337 0.0009195 -0.37067 -0.00020862 1.2631 0.00071088 562.8206439077601 100.79 0.11409 94.618 94.556 94.67 -6.1757 17 7 3 0 0 0 0.037795 1 67492 67492 64.236 31.931 1 43977000 75042 7075 50058 51151 87487 87487 0.07087773171247136 VYSIISVQL 9 Unmodified _VYSIISVQL_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.3007202148438 2 511.30005 1020.58555 NaN NaN NaN NaN NaN NaN NaN 85.854 1 85.916 85.416 86.416 0.061638 0 0 0 0.026323 1 47531 47531 70.716 26.309 1 75043 4760 50059 51152 87488 87488 0.07607797762852897 VYSIISVQL 9 Unmodified _VYSIISVQL_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2983703613281 2 511.30005 1020.58555 0.96606 0.00049395 0.25082 0.00012825 1.2169 0.0006222 511.30012937234824 95.182 1.3284 89.006 88.332 89.66 -6.1757 254 77 4 0 0 0 0.013472 5 62673 62673;62790;62906;63026;63154 70.716 24.345 1 353180000 75044 4760 50059 51152 87489;87490;87491;87492;87493 87489 0.07607797762852897 VYSINVTIY 9 Unmodified _VYSINVTIY_ 0 0 0 REV__nc|ENSG00000165181|Q5VXU9-2|SHOC1 REV__nc|ENSG00000165181|Q5VXU9-2|SHOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.290771484375 2 536.289682 1070.56481 0.34077 0.00018275 1.2379 0.00066389 1.5787 0.00084664 536.290000588218 49.076 0.20455 48.704 48.616 48.82 -0.37172 16 9 2 0 0 0 0.32871 1 26389 26389 15.847 3.3156 1 1961200 + 75045 29756 50060 51153 87494 87494 0.03235207383204397 VYSIVPQSW 9 Unmodified _VYSIVPQSW_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7825317382812 2 539.782025 1077.5495 0.58416 0.00031532 0.6548 0.00035345 1.239 0.00066877 539.782283365742 75.485 0.28494 75.008 74.884 75.169 -0.47713 29 16 2 0 0 0 0.32871 1 41396 41396 15.847 5.0233 1 1934500 75046 6810 50061 51154 87495 87495 0.013823405859966442 VYSIVPQSW 9 Unmodified _VYSIVPQSW_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.783203125 2 539.782025 1077.5495 0.24547 0.0001325 0.58639 0.00031652 0.83186 0.00044902 539.7822765375668 74.967 0.30746 75.013 74.876 75.183 0.045959 31 14 3 0 0 0 0.0095811 1 41325 41325 81.613 43.639 1 13217000 75047 6810 50061 51154 87496 87496 0.013823405859966442 VYSIVPQSW 9 Unmodified _VYSIVPQSW_ 0 0 0 nc|ENSG00000161813|Q71RC2-7|LARP4;nc|ENSG00000161813|Q71RC2-2|LARP4;nc|ENSG00000161813|Q71RC2-3|LARP4;ENSG00000161813|ENST00000398473|LARP4;nc|ENSG00000161813|Q71RC2-4|LARP4;nc|ENSG00000161813|Q71RC2-6|LARP4;ENST00000521120.1_1_12:50835423-50848201:+|nuORF nc|ENSG00000161813|Q71RC2-7|LARP4 nc|ENSG00000161813|Q71RC2-7|LARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7824096679688 2 539.782025 1077.5495 0.61042 0.00032949 0.31825 0.00017179 0.92867 0.00050128 539.7821590971236 82.904 0.61924 76.728 76.405 77.024 -6.1757 101 34 4 0 0 0 0.0082485 3 54607 54337;54470;54607 108 68.047 1 128310000 75048 6810 50061 51154 87497;87498;87499 87499 0.013823405859966442 VYSKATNHF 9 Unmodified _VYSKATNHF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 356.4430847167969 3 356.182058 1065.52434 1.7104 0.00060922 -1.0998 -0.00039174 0.61059 0.00021748 356.51622351300915 19.546 0.21604 16.89 16.771 16.987 -2.6564 32 22 2 0 0 0 0.20399 1 10360 10360 10.8 6.4703 1 3104900 75049 4278;14369 50062 51155 87500 87500 -0.005797142165647529 VYSKDNPNLLF 11 Unmodified _VYSKDNPNLLF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 655.3460693359375 2 655.342978 1308.6714 0.27595 0.00018084 2.3472 0.0015382 2.6231 0.001719 655.3449313914622 58.634 0.28947 58.143 57.943 58.232 -0.49079 21 13 2 0 0 0 0.11933 1 31869 31869 40.239 2.0636 1 2344000 75050 8403 50063 51156 87501 87501 0.029413378777007892 VYSKDNPNLLF 11 Unmodified _VYSKDNPNLLF_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 655.3433227539062 2 655.342978 1308.6714 1.1096 0.0007272 0.88138 0.00057761 1.991 0.0013048 655.3439419624633 63.879 0.33527 57.703 57.487 57.822 -6.1757 31 18 2 0 0 0 0.010023 1 41275 41275 67.838 33.436 1 10826000 75051 8403 50063 51156 87502 87502 0.029413378777007892 VYSKDQLQTF 10 Unmodified _VYSKDQLQTF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.8140258789062 2 614.814053 1227.61355 0.54032 0.0003322 0.21678 0.00013328 0.7571 0.00046548 614.814291210555 39.183 0.30886 39.183 39.012 39.321 0 41 14 4 0 0 0 0.036372 1 20945 20945 75.761 57.614 1 10159000 75052 3082 50064 51157 87503 87503 0.008850759522829321 VYSKDQLQTF 10 Unmodified _VYSKDQLQTF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.8135375976562 2 614.814053 1227.61355 0.092668 5.6974E-05 0.7232 0.00044463 0.81587 0.00050161 614.8142575334215 39.457 0.27885 39.16 39.029 39.308 -0.29716 35 12 4 0 0 0 0.0089457 1 20800 20800 114.2 72.362 1 8428900 75053 3082 50064 51157 87504 87504 0.008850759522829321 VYSKDQLQTF 10 Unmodified _VYSKDQLQTF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.8145751953125 2 614.814053 1227.61355 0.49681 0.00030545 -0.15389 -9.4615E-05 0.34292 0.00021083 614.8142476939829 39.09 0.19596 39.101 39.021 39.217 0.011452 13 8 2 0 0 0 0.65471 1 20829 20829 13.042 6.3193 1 984560 75054 3082 50064 51157 87505 87505 0.008850759522829321 VYSKDQLQTF 10 Unmodified _VYSKDQLQTF_ 0 0 0 ENSG00000138107|ENST00000369905|ACTR1A;ENSG00000115073|ENST00000289228|ACTR1B;ENST00000480947.1_1_10:104243895-104247966:-|nuORF;ENST00000451664.1_1_2:98275340-98280353:-|nuORF;ENST00000418944.1_1_2:110941632-110941998:+|nuORF;ENST00000460427.2_1_2:98275340-98276060:-|nuORF ENSG00000138107|ENST00000369905|ACTR1A ENSG00000138107|ENST00000369905|ACTR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.814697265625 2 614.814053 1227.61355 0.45848 0.00028188 0.15618 9.6022E-05 0.61466 0.0003779 614.8143263226085 44.291 0.39838 39.439 39.264 39.662 -4.852 68 28 3 0 0 0 2.8495E-07 2 27053 26925;27053 160.69 118.85 1 42875000 75055 3082 50064 51157 87506;87507 87507 0.008850759522829321 VYSKHWLF 8 Unmodified _VYSKHWLF_ 0 0 0 ENSG00000166788|ENST00000524803|SAAL1;ENST00000530736.1_1_11:18115485-18127588:-|nuORF;ENST00000533851.5_1_11:18111045-18127588:-|nuORF ENSG00000166788|ENST00000524803|SAAL1 ENSG00000166788|ENST00000524803|SAAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.52734375 3 360.527277 1078.56 0.44224 0.00015944 -0.084245 -3.0373E-05 0.35799 0.00012907 360.5272447333712 52.198 0.28453 52.139 51.983 52.267 -0.058914 31 13 3 0 0 0 0.67481 1 28244 28244 20.454 13.164 1 6240500 75056 7530 50065 51158 87508 87508 0.023863680310796553 VYSKKVEYL 9 Unmodified _VYSKKVEYL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;ENST00000418794.1_1_22:50954176-50956482:+|nuORF;nc|ENSG00000025770|Q6IBW4-5|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.8819274902344 3 376.881497 1127.62266 -0.4301 -0.0001621 0.69842 0.00026322 0.26832 0.00010113 376.8817129084057 29.076 0.2795 29.076 28.923 29.202 0 32 13 3 0 0 0 0.27545 1 15025 15025 18.373 6.1983 1 8010000 75057 557 50066 51159 87509 87509 0.06395469308608881 VYSKKVEYL 9 Unmodified _VYSKKVEYL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;ENST00000418794.1_1_22:50954176-50956482:+|nuORF;nc|ENSG00000025770|Q6IBW4-5|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.8190307617188 2 564.818607 1127.62266 -0.19554 -0.00011045 0.23024 0.00013005 0.034699 1.9599E-05 564.8188287820046 29.081 0.17945 29.081 28.982 29.161 0 13 8 2 0 0 0 0.20389 1 15064 15064 29.841 17.6 1 1775100 75058 557 50066 51159 87510 87510 0.06395469308608881 VYSKKVEYL 9 Unmodified _VYSKKVEYL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;ENST00000418794.1_1_22:50954176-50956482:+|nuORF;nc|ENSG00000025770|Q6IBW4-5|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.8818359375 3 376.881497 1127.62266 1.4572 0.00054918 -0.21638 -8.1548E-05 1.2408 0.00046763 376.8814891271341 32.126 0.38173 28.431 28.226 28.608 -3.6958 35 21 2 0 0 0 0.082934 1 18230 18230 37.075 12.084 1 39870000 75059 557 50066 51159 87511 87511 0.06395469308608881 VYSKKVEYL 9 Unmodified _VYSKKVEYL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;ENST00000418794.1_1_22:50954176-50956482:+|nuORF;nc|ENSG00000025770|Q6IBW4-5|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.8203125 2 564.818607 1127.62266 1.1398 0.00064378 -0.93696 -0.00052921 0.20284 0.00011457 564.8182167125855 32.184 0.28543 28.328 28.147 28.432 -3.8562 22 16 2 0 0 0 0.0090383 1 18259 18259 93.166 49.393 1 12783000 75060 557 50066 51159 87512 87512 0.06395469308608881 VYSKKVEYL 9 Unmodified _VYSKKVEYL_ 0 0 0 nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;ENST00000418794.1_1_22:50954176-50956482:+|nuORF;nc|ENSG00000025770|Q6IBW4-5|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 nc|ENSG00000025770|Q6IBW4-2|NCAPH2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 376.881497 1127.62266 0.60748 0.00022895 -0.49055 -0.00018488 0.11693 4.4068E-05 376.88138910731936 29.054 0.11684 28.992 28.9 29.016 -0.062159 -0.041873 -0.0010275 NaN 18.373 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 2883700 75061 557 50066 51159 0.06395469308608881 VYSKTQQSF 9 Unmodified _VYSKTQQSF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2728271484375 2 544.274564 1086.53457 -0.22717 -0.00012364 0.50827 0.00027664 0.28111 0.000153 544.2742209541013 22.113 0.21614 22.113 21.988 22.204 0 18 13 2 0 0 0 0.51218 1 11220 11220 6.7232 0 1 641800 75062 5528 50067 51160 87513 87513 -0.005231512820046191 VYSKTQQSF 9 Unmodified _VYSKTQQSF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;ENST00000484819.1_1_1:154238957-154241481:+|nuORF nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 543.7638549804688 2 544.274564 1086.53457 0.072723 3.9581E-05 -2.3061 -0.0012551 -2.2333 -0.0012155 544.2727459078051 24.792 0.20131 21.909 21.758 21.959 -2.8831 15 11 2 0 0 0 0.14225 1 13480 13480 30.637 9.7653 1 3094000 75063 5528 50067 51160 87514 87514 -0.005231512820046191 VYSLAATLIF 10 Unmodified _VYSLAATLIF_ 0 0 0 REV__ENSG00000161921|ENST00000293778|CXCL16 REV__ENSG00000161921|ENST00000293778|CXCL16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3180541992188 2 549.3157 1096.61685 0.34583 0.00018997 0.20152 0.0001107 0.54735 0.00030067 549.3156841894233 69.606 0.33185 69.637 69.514 69.846 0.030914 28 16 2 0 0 0 0.14917 1 38358 38358 39.957 3.4511 1 20385000 + 75064 21614 50068 51161 87515 87515 0.07240370796944262 VYSLGMTLYW 10 Unmodified _VYSLGMTLYW_ 0 0 0 ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-3|FRMPD2;ENST00000486151.5_1_10:49420141-49482610:-|nuORF;ENST00000468556.1_1_10:49450143-49459678:-|nuORF ENSG00000170324|ENST00000374201|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.8019409179688 2 616.804642 1231.59473 NaN NaN NaN NaN NaN NaN NaN 92.826 1 92.826 92.326 93.326 0 0 0 0 0.99091 1 51326 51326 1.6526 0.17072 1 75065 7971 50069 51162 87516 87516 -0.011801769431258435 VYSLIKNKI 9 Unmodified _VYSLIKNKI_ 0 0 0 ENST00000488258.5_1_7:151265789-151372578:-|nuORF;nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2 ENST00000488258.5_1_7:151265789-151372578:-|nuORF ENST00000488258.5_1_7:151265789-151372578:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 359.8937683105469 3 359.893737 1076.65938 0.083578 3.0079E-05 -0.37284 -0.00013418 -0.28926 -0.0001041 359.8936561653146 38.683 0.26241 38.694 38.578 38.84 0.011456 34 12 4 0 0 0 0.047714 1 20559 20559 45.74 15.036 1 13301000 75066 2445 50070 51163 87517 87517 0.12411765925162399 VYSLIKNKI 9 Unmodified _VYSLIKNKI_ 0 0 0 ENST00000488258.5_1_7:151265789-151372578:-|nuORF;nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2 ENST00000488258.5_1_7:151265789-151372578:-|nuORF ENST00000488258.5_1_7:151265789-151372578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.8941955566406 3 359.893737 1076.65938 1.3909 0.00050056 0.041859 1.5065E-05 1.4327 0.00051563 359.89369239689165 43.052 0.37474 38.287 38.073 38.448 -4.7648 67 24 3 0 0 0 0.033587 2 26024 26024;26161 53.404 16.898 1 55945000 75067 2445 50070 51163 87518;87519 87518 0.12411765925162399 VYSLIKNKI 9 Unmodified _VYSLIKNKI_ 0 0 0 ENST00000488258.5_1_7:151265789-151372578:-|nuORF;nc|ENSG00000106617|Q9UGJ0-2|PRKAG2;nc|ENSG00000106617|Q9UGJ0-3|PRKAG2;ENSG00000106617|ENST00000287878|PRKAG2 ENST00000488258.5_1_7:151265789-151372578:-|nuORF ENST00000488258.5_1_7:151265789-151372578:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3380126953125 2 539.336967 1076.65938 0.58031 0.00031298 -0.094387 -5.0906E-05 0.48592 0.00026208 539.3368197162577 43.084 0.28738 38.319 38.146 38.433 -4.7648 28 18 2 0 0 0 0.0085366 1 26049 26049 99.799 47.531 1 18432000 75068 2445 50070 51163 87520 87520 0.12411765925162399 VYSLQEQHF 9 Unmodified _VYSLQEQHF_ 0 0 0 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 ENSG00000162695|ENST00000357650|SLC30A7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7799682617188 2 575.780013 1149.54547 1.0644 0.00061284 -0.9545 -0.00054958 0.10986 6.3256E-05 575.7791384317081 48.563 0.23421 43.167 43.024 43.258 -5.3961 21 13 2 0 0 0 0.0071894 1 30294 30294 111.29 73.313 1 14401000 75069 6895 50071 51164 87521 87521 -0.023317489077271603 VYSLQQFGF 9 Unmodified _VYSLQQFGF_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7745361328125 2 544.7742 1087.53385 0.55783 0.00030389 -0.080557 -4.3885E-05 0.47727 0.00026001 544.7745546011864 93.572 0.64323 87.397 87.163 87.806 -6.1757 77 39 2 0 0 0 0.012148 3 62071 61934;62071;62225 74.423 57.48 1 20136000 75070 713 50072 51165 87522;87523;87524 87523 -0.00641945931056398 VYSLSNLFTV 10 Unmodified _VYSLSNLFTV_ 0 0 0 ENST00000335007.9_1_12:111157941-111158094:-|nuORF ENST00000335007.9_1_12:111157941-111158094:-|nuORF ENST00000335007.9_1_12:111157941-111158094:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8082275390625 2 571.808239 1141.60193 0.027869 1.5936E-05 0.96021 0.00054906 0.98808 0.00056499 571.809121141694 55.323 0.359 55.255 55.076 55.435 -0.068737 34 17 3 0 0 0 0.1899 1 30032 30032 34.932 0.53034 1 4119300 75071 11890 50073 51166 87525 87525 0.03678878928940321 VYSLVTRTW 9 Unmodified _VYSLVTRTW_ 0 0 0 ENST00000596338.5_1_19:49661123-49685875:+|nuORF;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4 ENST00000596338.5_1_19:49661123-49685875:+|nuORF ENST00000596338.5_1_19:49661123-49685875:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.8090209960938 2 562.808574 1123.60259 0.18804 0.00010583 1.9407 0.0010922 2.1287 0.001198 562.8099986249847 56.275 0.28409 56.206 56.036 56.32 -0.068737 30 14 3 0 0 0 0.011291 1 30574 30574 76.825 29.904 1 11268000 75072 4221 50074 51167 87526 87526 0.04573718368669688 VYSLVTRTW 9 Unmodified _VYSLVTRTW_ 0 0 0 ENST00000596338.5_1_19:49661123-49685875:+|nuORF;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4 ENST00000596338.5_1_19:49661123-49685875:+|nuORF ENST00000596338.5_1_19:49661123-49685875:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8089599609375 2 562.808574 1123.60259 0.59424 0.00033444 1.5119 0.00085093 2.1062 0.0011854 562.8091983496691 62.072 0.25846 55.897 55.708 55.966 -6.1757 24 14 2 0 0 0 0.047714 1 39953 39953 45.74 7.5887 1 25656000 75073 4221 50074 51167 87527 87527 0.04573718368669688 VYSNNKTYSW 10 Unmodified _VYSNNKTYSW_ 0 0 0 REV__ENST00000492718.1_1_1:110257466-110258024:+|nuORF REV__ENST00000492718.1_1_1:110257466-110258024:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7992553710938 2 631.296027 1260.5775 0.87379 0.00055162 -0.59649 -0.00037656 0.2773 0.00017506 631.2954123146465 47.318 0.26405 42.237 42.073 42.337 -5.0805 23 16 2 0 0 0 0.24625 1 29300 29300 30.637 3.0077 1 11924000 + 75074 27911 50075 51168 87528 87528 -0.04236381224586694 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2686767578125 2 544.268947 1086.52334 0.58565 0.00031875 -0.49323 -0.00026845 0.092429 5.0306E-05 544.2689462865653 60.108 0.50494 60.108 59.902 60.407 0 84 22 5 0 0 0 0.040683 2 33452 33452;33553 64.236 37.353 1 55704000 75075 9274 50076 51169 87529;87530 87529 -0.01645973376139409 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2684936523438 2 544.268947 1086.52334 -0.34805 -0.00018943 0.23585 0.00012837 -0.1122 -6.1067E-05 544.2690315979441 60.672 0.36271 60.183 59.99 60.353 -0.48932 52 17 4 0 0 0 0.2546 1 32978 32978 26.884 16.06 1 26172000 75076 9274 50076 51169 87531 87531 -0.01645973376139409 VYSNSIYEL 9 Unmodified _VYSNSIYEL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2681274414062 2 544.268947 1086.52334 0.53507 0.00029122 -0.0017242 -9.3841E-07 0.53335 0.00029028 544.2688617602565 67.639 0.544 61.463 61.163 61.707 -6.1757 49 30 2 0 0 0 0.029718 2 43940 43940;44069 71.134 22.788 1 220480000 75077 9274 50076 51169 87532;87533 87532 -0.01645973376139409 VYSNSIYELL 10 Unmodified _VYSNSIYELL_ 0 0 0 ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENSG00000184584|ENST00000330794|STING1;ENST00000507297.5_1_5:138855848-138858268:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF ENST00000509573.5_1_5:138855949-138860944:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8110961914062 2 600.810979 1199.6074 0.5487 0.00032967 -0.28718 -0.00017254 0.26153 0.00015713 600.8113507206644 94.371 0.70343 88.195 87.806 88.509 -6.1757 99 40 3 0 0 0 0.095098 2 62418 62418;62545 47.749 15.673 1 11976000 75078 9274 50077 51170 87534;87535 87534 0.015585577207730239 VYSPAIKDSTM 11 Unmodified _VYSPAIKDSTM_ 0 0 0 ENST00000480406.6_1_10:92654546-92665092:+|nuORF;ENSG00000148688|ENST00000371703|RPP30;nc|ENSG00000148688|P78346-2|RPP30;ENST00000466462.5_1_10:92635852-92660362:+|nuORF;ENST00000487998.5_1_10:92631743-92654759:+|nuORF ENST00000480406.6_1_10:92654546-92665092:+|nuORF ENST00000480406.6_1_10:92654546-92665092:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 606.301513671875 2 606.302464 1210.59037 NaN NaN NaN NaN NaN NaN NaN 41.386 1 36.778 36.278 37.278 -4.6079 0 0 0 0.17693 1 24844 24844 40.725 17.989 1 75079 5954 50078 51171 87536 87536 -0.006496861567029555 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2901000976562 2 521.290017 1040.56548 -0.035068 -1.8281E-05 0.33859 0.00017651 0.30353 0.00015823 521.290160431846 56.183 0.31545 56.183 56.007 56.322 0 40 14 4 0 0 0 0.0086722 1 31202 31202 88.954 48.997 1 16141000 75080 1285;2467 50079 51172 87537 87537 0.0468204682290434 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2879638671875 2 521.290017 1040.56548 -0.65663 -0.00034229 -0.15992 -8.3366E-05 -0.81655 -0.00042566 521.2899053319894 56.571 0.5271 56.085 55.903 56.43 -0.48554 123 36 5 0 0 0 0.0082661 2 30659 30659;30772 92.491 48.946 1 486850000 75081 1285;2467 50079 51172 87538;87539 87538 0.0468204682290434 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2890625 2 521.290017 1040.56548 -0.2976 -0.00015514 -0.039766 -2.073E-05 -0.33737 -0.00017587 521.2899585273501 56.273 0.38273 56.204 56.036 56.419 -0.068741 60 19 4 0 0 0 0.0004779 2 30552 30552;30658 144.35 76.27 1 150130000 75082 1285;2467 50079 51172 87540;87541 87540 0.0468204682290434 VYSPHVLNL 9 Unmodified _VYSPHVLNL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.289794921875 2 521.290017 1040.56548 0.69354 0.00036154 -0.086527 -4.5106E-05 0.60702 0.00031643 521.290023804678 62.121 1.2789 55.945 55.637 56.916 -6.1757 239 68 5 0 0 0 0.0004779 6 39898 39898;40024;40157;40284;40408;40538 144.35 76.675 1 1768999999.9999998 75083 1285;2467 50079 51172 87542;87543;87544;87545;87546;87547 87542 0.0468204682290434 VYSPHVLNLTL 11 Unmodified _VYSPHVLNLTL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.3568725585938 2 628.355888 1254.69722 0.51735 0.00032508 0.036179 2.2733E-05 0.55352 0.00034781 628.3558369263075 74.373 0.25634 73.897 73.741 73.997 -0.47588 16 10 2 0 0 0 0.51719 1 40704 40704 24.991 13.496 1 1050100 75084 1285;2467 50080 51173 87548 87548 0.08006232119987544 VYSPHVLNLTL 11 Unmodified _VYSPHVLNLTL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.356201171875 2 628.355888 1254.69722 0.41864 0.00026306 -0.33954 -0.00021335 0.079103 4.9705E-05 628.3556787832947 73.85 0.33551 73.894 73.692 74.028 0.043983 48 15 4 0 0 0 0.020907 2 40648 40648;40753 70.332 46.542 1 35156000 75085 1285;2467 50080 51173 87549;87550 87549 0.08006232119987544 VYSPHVLNLTL 11 Unmodified _VYSPHVLNLTL_ 0 0 0 nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1;ENST00000441149.6_1_9:130980552-131010310:+|nuORF nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000106976|Q05193-5|DNM1 nc|ENSG00000079805|P50570-3|DNM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3564453125 2 628.355888 1254.69722 0.75619 0.00047516 0.7627 0.00047925 1.5189 0.00095441 628.3563380798196 90.097 0.59615 83.921 83.544 84.14 -6.1757 85 33 3 0 0 0 9.664E-09 3 59310 59310;59435;59564 132.38 84.785 1 32188000 75086 1285;2467 50080 51173 87551;87552;87553 87551 0.08006232119987544 VYSPKSPSL 9 Unmodified _VYSPKSPSL_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2698974609375 2 489.26875 976.522947 -0.39995 -0.00019568 1.4795 0.00072387 1.0795 0.00052819 489.26903972781537 33.249 0.36552 33.249 33.068 33.434 0 80 18 6 0 0 0 0.012668 2 17368 17368;17473 72.968 31.128 1 56969000 75087 2069 50081 51174 87554;87555 87554 0.03374651694673503 VYSPKSPSL 9 Unmodified _VYSPKSPSL_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2681884765625 2 489.26875 976.522947 -0.095869 -4.6906E-05 1.2715 0.00062212 1.1757 0.00057522 489.26908986126097 33.346 0.52325 33.187 32.984 33.507 -0.15918 86 21 5 0 0 0 0.0087807 2 17342 17342;17445 106.94 44.367 1 85608000 75088 2069 50081 51174 87556;87557 87556 0.03374651694673503 VYSPKSPSL 9 Unmodified _VYSPKSPSL_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.2678833007812 2 489.26875 976.522947 0.2633 0.00012883 0.43432 0.0002125 0.69762 0.00034132 489.2681083608491 33.155 0.3681 33.183 33.018 33.386 0.028931 44 15 4 0 0 0 0.0094097 1 17431 17431 82.529 36.83 1 9026300 75089 2069 50081 51174 87558 87558 0.03374651694673503 VYSPKSPSL 9 Unmodified _VYSPKSPSL_ 0 0 0 nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 nc|ENSG00000102858|O60291-4|MGRN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.2696838378906 2 489.26875 976.522947 1.012 0.00049516 0.8104 0.0003965 1.8224 0.00089166 489.2686338523048 38.015 0.61416 33.646 33.286 33.9 -4.3689 166 36 7 0 0 0 0.0082475 3 22277 22277;22409;22540 92.653 37.88 1 555830000 75090 2069 50081 51174 87559;87560;87561 87559 0.03374651694673503 VYSPLGSAYKL 11 Unmodified _VYSPLGSAYKL_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.3294067382812 2 599.329339 1196.64412 0.34902 0.00020918 -0.0032148 -1.9267E-06 0.3458 0.00020725 599.3292048768557 59.743 0.26344 59.252 59.089 59.352 -0.49079 17 12 2 0 0 0 0.15928 1 32498 32498 35.612 16.25 1 1594100 75091 8653 50082 51175 87562 87562 0.05366854337330551 VYSPLGSAYKL 11 Unmodified _VYSPLGSAYKL_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3310546875 2 599.329339 1196.64412 0.18715 0.00011216 -0.13317 -7.9814E-05 0.053978 3.2351E-05 599.32980825556 59.333 0.26482 59.28 59.134 59.399 -0.053062 35 13 3 0 0 0 0.083469 1 32313 32313 44.392 25.03 1 14224000 75092 8653 50082 51175 87563 87563 0.05366854337330551 VYSPLGSAYKL 11 Unmodified _VYSPLGSAYKL_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000514806.5_1_5:54965038-54993786:-|nuORF;nc|ENSG00000177058|Q8NBW4-2|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.3286743164062 2 599.329339 1196.64412 0.0022949 1.3754E-06 -0.92391 -0.00055372 -0.92161 -0.00055235 599.3287637882472 65.124 0.57166 58.948 58.752 59.324 -6.1757 74 31 3 0 0 0 0.018218 1 42380 42380 59.052 9.4982 1 20877000 75093 8653 50082 51175 87564 87564 0.05366854337330551 VYSPRYNITF 10 Unmodified _VYSPRYNITF_ 0 0 0 ENST00000475818.5_1_3:13522761-13543460:+|nuORF;ENSG00000163517|ENST00000295757|HDAC11 ENST00000475818.5_1_3:13522761-13543460:+|nuORF ENST00000475818.5_1_3:13522761-13543460:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.8265380859375 2 630.324588 1258.63462 0.84713 0.00053397 0.55325 0.00034872 1.4004 0.00088269 630.8262645653874 57.533 0.21531 57.467 57.378 57.593 -0.066036 16 10 2 0 0 0 0.2125 1 31337 31337 43.982 26.869 1 2125800 75094 7009 50083 51176 87565 87565 0.015650860518007903 VYSPSEEEKR 10 Unmodified _VYSPSEEEKR_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2998046875 2 612.298767 1222.58298 0.16754 0.00010258 -0.23801 -0.00014573 -0.070469 -4.3148E-05 612.2991349308331 54.058 0.29927 53.991 53.863 54.162 -0.066936 27 14 3 0 0 0 0.54684 1 29341 29341 13.906 2.4113 1 2885100 75095 6262 50084 51177 87566 87566 -0.019407024327847466 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7949829101562 2 549.795132 1097.57571 0.74727 0.00041084 -0.063715 -3.503E-05 0.68355 0.00037581 549.7949988761571 73.56 0.28477 73.56 73.454 73.738 0 25 12 3 0 0 0 0.43463 1 40946 40946 10.824 5.5933 1 700580 75096 2972 50085 51178 87567 87567 0.030826097574845335 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7951049804688 2 549.795132 1097.57571 0.70903 0.00038982 0.31996 0.00017591 1.029 0.00056573 549.7951757080101 74.076 0.47836 73.601 73.362 73.84 -0.47588 74 21 5 0 0 0 0.019303 2 40488 40488;40589 64.236 27.255 1 60349000 75097 2972 50085 51178 87568;87569 87568 0.030826097574845335 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.794921875 2 549.795132 1097.57571 0.2801 0.000154 0.36209 0.00019908 0.6422 0.00035308 549.7949646823465 73.58 0.75585 73.624 73.272 74.028 0.043983 116 34 5 0 0 0 0.028475 2 40468 40468;40569 56.177 25.541 1 157760000 75098 2972 50085 51178 87570;87571 87570 0.030826097574845335 VYSQFITQL 9 Unmodified _VYSQFITQL_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50;ENST00000496204.1_1_5:131931266-131935763:+|nuORF nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7944946289062 2 549.795132 1097.57571 1.0654 0.00058576 -0.60433 -0.00033226 0.46109 0.0002535 549.7948275272257 81.298 0.85313 75.122 74.679 75.532 -6.1757 170 48 5 0 0 0 0.011968 3 53219 53219;53347;53481 74.929 36.955 1 686430000 75099 2972 50085 51178 87572;87573;87574 87572 0.030826097574845335 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.9007263183594 3 373.901003 1118.68118 -0.018496 -6.9157E-06 0.15695 5.8685E-05 0.13846 5.1769E-05 373.90097237688065 45.256 0.21477 45.228 45.107 45.322 -0.028011 31 11 4 0 0 0 0.017075 1 24260 24260 66.457 22.684 1 48684000 75100 3852 50086 51179 87575 87575 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.348388671875 2 560.347866 1118.68118 0.40941 0.00022941 0.081956 4.5924E-05 0.49136 0.00027533 560.3479593149975 45.239 0.12491 45.211 45.138 45.263 -0.028011 9 6 2 0 0 0 0.0088231 1 24305 24305 114.65 66.303 1 7187400 75101 3852 50086 51179 87576 87576 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.9006652832031 3 373.901003 1118.68118 NaN NaN NaN NaN NaN NaN NaN 45.378 1 45.35 44.85 45.85 -0.028011 0 0 0 0.16551 1 24375 24375 34.932 25.549 1 75102 3852 50086 51179 87577 87577 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.901611328125 3 373.901003 1118.68118 1.4212 0.0005314 0.07036 2.6308E-05 1.4916 0.00055771 373.90101443223807 49.971 0.4973 44.431 44.183 44.68 -5.5391 82 31 3 0 0 0 0.013609 2 31320 31181;31320 70.332 41.837 1 86423000 75103 3852 50086 51179 87578;87579 87579 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.347900390625 2 560.347866 1118.68118 1.0571 0.00059235 0.020023 1.122E-05 1.0771 0.00060357 560.3479246827086 49.953 0.40264 44.414 44.218 44.62 -5.5391 50 25 3 0 0 0 0.0088231 1 31324 31324 103.35 63.396 1 28723000 75104 3852 50086 51179 87580 87580 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2368774414062 3 373.901003 1118.68118 1.1753 0.00043944 1.291 0.0004827 2.4663 0.00092214 374.2361605795166 65.177 0.67747 59.002 58.666 59.344 -6.1757 60 37 2 0 0 0 0.047714 1 42294 42294 45.74 21.95 1 11370000 75105 3852 50086 51179 87581 87581 0.1265857067376146 VYSQILRKL 9 Unmodified _VYSQILRKL_ 0 0 0 nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF;ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF nc|ENSG00000125450|Q9BW27-3|NUP85 nc|ENSG00000125450|Q9BW27-3|NUP85 MSMS AL20221201_MKP_PDAC_01 4 373.9011535644531 3 373.901003 1118.68118 NaN NaN NaN NaN NaN NaN NaN 65.386 1 59.21 58.71 59.71 -6.1757 0 0 0 0.076083 1 42437 42437 49.554 24.563 1 75106 3852 50086 51179 87582 87582 0.1265857067376146 VYSQIPAAVKL 11 Unmodified _VYSQIPAAVKL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.8529052734375 2 594.852981 1187.69141 0.34738 0.00020664 -0.26527 -0.0001578 0.082111 4.8844E-05 594.8527385377566 58.509 0.27035 58.018 57.883 58.153 -0.49079 30 12 3 0 0 0 0.027203 1 31791 31791 67.081 50.932 1 7583200 75107 2211 50087 51180 87583 87583 0.10507133608325603 VYSQIPAAVKL 11 Unmodified _VYSQIPAAVKL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.853271484375 2 594.852981 1187.69141 0.61849 0.00036791 -0.53453 -0.00031796 0.083968 4.9949E-05 594.852614990038 58.108 0.3572 58.042 57.852 58.21 -0.066036 51 17 4 0 0 0 0.0094656 2 31687 31585;31687 81.915 65.766 1 39737000 75108 2211 50087 51180 87584;87585 87585 0.10507133608325603 VYSQIPAAVKL 11 Unmodified _VYSQIPAAVKL_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8536376953125 2 594.852981 1187.69141 1.0151 0.00060384 0.038913 2.3148E-05 1.054 0.00062699 594.8528585224983 63.935 0.68067 57.759 57.523 58.204 -6.1757 102 36 4 0 0 0 0.0011221 3 41536 41265;41395;41536 97.741 82.493 1 92692000 75109 2211 50087 51180 87586;87587;87588 87588 0.10507133608325603 VYSQPGFTVSG 11 Unmodified _VYSQPGFTVSG_ 0 0 0 nc|ENSG00000196767|P49335|POU3F4;ENSG00000196767|ENST00000644024|POU3F4 nc|ENSG00000196767|P49335|POU3F4 nc|ENSG00000196767|P49335|POU3F4 MSMS AL20221201_MKP_PDAC_01 4 381.1925048828125 3 381.188989 1140.54514 NaN NaN NaN NaN NaN NaN NaN 58.498 1 52.424 51.924 52.924 -6.0745 0 0 0 0.93893 1 37486 37486 1.3296 0 1 75110 9867 50088 51181 87589 87589 -0.019511686275791362 VYSQPPHML 9 Oxidation (M) _VYSQPPHM(Oxidation (M))L_ VYSQPPHM(1)L VYSQPPHM(51)L 0 0 1 nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L nc|ENSG00000186174|Q86UU0-2|BCL9L MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2656860351562 2 544.265684 1086.51682 0.7742 0.00042137 -0.5204 -0.00028324 0.2538 0.00013814 544.2653119247137 34.684 0.27974 30.589 30.473 30.752 -4.0951 24 16 2 0 0 0 0.038285 1 20037 20037 50.855 27.707 1 7974800 75111 9458 50089 51182 87590 87590 1558 -0.022981898084935892 VYSRDPNYL 9 Unmodified _VYSRDPNYL_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7788696289062 2 563.780013 1125.54547 -0.25631 -0.0001445 -0.32148 -0.00018125 -0.57779 -0.00032575 563.7800866378983 33.58 0.15749 33.58 33.53 33.688 0 24 14 2 0 0 0 0.0088668 1 17621 17621 87.258 45.303 1 7620600 75112 3016 50090 51183 87591 87591 -0.012277489077177961 VYSRDPNYL 9 Unmodified _VYSRDPNYL_ 0 0 0 nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A nc|ENSG00000114062|Q05086-2|UBE3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7869262695312 2 563.780013 1125.54547 1.2896 0.00072703 0.96768 0.00054556 2.2572 0.0012726 563.7806314940281 37.896 0.23564 33.527 33.4 33.636 -4.3689 20 13 2 0 0 0 0.014182 2 22247 22247;22308 69.338 33.211 1 6664500 75113 3016 50090 51183 87592;87593 87592 -0.012277489077177961 VYSRIEQLL 9 Unmodified _VYSRIEQLL_ 0 0 0 nc|nan|Q8TB03-2|CXorf38;ENSG00000185753|ENST00000327877|CXorf38 nc|nan|Q8TB03-2|CXorf38 nc|nan|Q8TB03-2|CXorf38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8231811523438 2 560.821681 1119.62881 -0.13857 -7.7715E-05 1.0154 0.00056948 0.87687 0.00049177 560.822306538972 61.097 0.24029 60.608 60.516 60.756 -0.48932 17 11 2 0 0 0 0.01958 1 33282 33282 63.961 7.7835 1 4328000 75114 9408 50091 51184 87594 87594 0.07377987540144204 VYSRLTTPVF 10 Unmodified _VYSRLTTPVF_ 0 0 0 ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 ENSG00000001630|ENST00000003100|CYP51A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.8296508789062 2 591.829506 1181.64446 0.70346 0.00041633 -1.2147 -0.00071891 -0.51127 -0.00030258 591.8291373516088 57.896 0.21563 57.83 57.694 57.91 -0.066032 23 10 3 0 0 0 0.078742 1 31500 31500 51.415 22.334 1 3830500 75115 259 50092 51185 87595 87595 0.06090274057169154 VYSRTFTW 8 Unmodified _VYSRTFTW_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2669677734375 2 530.266542 1058.51853 NaN NaN NaN NaN NaN NaN NaN 51.775 1 51.716 51.216 52.216 -0.058918 0 0 0 0.36399 1 28036 28036 57.722 27.497 1 75116 10015 50093 51186 87596 87596 -0.008388127282387359 VYSRTFTWL 9 Unmodified _VYSRTFTWL_ 0 0 0 nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C nc|ENSG00000197879|O00159-2|MYO1C nc|ENSG00000197879|O00159-2|MYO1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8097534179688 2 586.808574 1171.60259 0.78742 0.00046206 -0.0052912 -3.1049E-06 0.78213 0.00045896 586.8085378408874 69.008 0.40346 69.039 68.823 69.227 0.030914 53 19 3 0 0 0 0.024189 2 37845 37845;37946 59.368 31.482 1 82937000 75117 10015 50094 51187 87597;87598 87597 0.02365718368673697 VYSSAEFHSL 10 Unmodified _VYSSAEFHSL_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2722778320312 2 570.272021 1138.52949 0.15413 8.7899E-05 1.09 0.00062159 1.2441 0.00070949 570.2726803824625 43.574 0.262 43.574 43.461 43.723 0 28 12 3 0 0 0 0.0032765 1 23646 23646 103.75 71.443 1 32137000 75118 7709 50095 51188 87599 87599 -0.03423455144616128 VYSSAEFHSL 10 Unmodified _VYSSAEFHSL_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.271728515625 2 570.272021 1138.52949 0.20966 0.00011957 -0.47743 -0.00027226 -0.26776 -0.0001527 570.2719868495059 43.791 0.14355 43.48 43.403 43.547 -0.31039 9 6 2 0 0 0 0.0073675 1 23336 23336 92.491 52.534 1 14255000 75119 7709 50095 51188 87600 87600 -0.03423455144616128 VYSSAEFHSL 10 Unmodified _VYSSAEFHSL_ 0 0 0 nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 nc|ENSG00000168056|Q9NS15-2|LTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.2720336914062 2 570.272021 1138.52949 0.84755 0.00048333 -0.32233 -0.00018381 0.52522 0.00029952 570.271976922499 48.817 0.3694 43.421 43.203 43.572 -5.3961 47 21 3 0 0 0 0.0020965 1 30413 30413 108 81.113 1 81526000 75120 7709 50095 51188 87601 87601 -0.03423455144616128 VYSSLYEIM 9 Unmodified _VYSSLYEIM_ 0 0 0 ENST00000267859.7_1_15:59955189-59955258:-|nuORF ENST00000267859.7_1_15:59955189-59955258:-|nuORF ENST00000267859.7_1_15:59955189-59955258:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.848876953125 3 368.847576 1103.5209 1.1264 0.00041547 -0.43599 -0.00016081 0.6904 0.00025465 368.8475289745727 46.663 4.5088 41.583 41.23 45.739 -5.0805 1495 352 6 0 0 0 0.41742 1 31005 31005 7.609 0 1 23053000000 75121 11353 50096 51189 87602 87602 -0.02672145105452728 VYSSPWLSSKH 11 Unmodified _VYSSPWLSSKH_ 0 0 0 ENST00000261015.4_1_2:203772671-203776309:-|nuORF ENST00000261015.4_1_2:203772671-203776309:-|nuORF ENST00000261015.4_1_2:203772671-203776309:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8883361816406 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 58.933 1 58.933 58.433 59.433 0 0 0 0 0.92234 1 32822 32822 2.8433 1.251 1 75122 11230 50097 51190 87603 87603 0.0072018456346540916 VYSSSRHDGYD 11 Unmodified _VYSSSRHDGYD_ 0 0 0 ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF ENST00000588646.1_1_18:48685135-48685465:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.1873168945312 3 429.186308 1284.53709 0.59926 0.00025719 0.68088 0.00029223 1.2801 0.00054942 429.18660609205546 32.906 0.27167 29.049 28.872 29.144 -3.8562 34 15 3 0 0 0 0.65846 1 18805 18805 4.1166 0 1 20737000 75123 15651 50098 51191 87604 87604 -0.09379347615004008 VYSTMLVFF 9 Oxidation (M) _VYSTM(Oxidation (M))LVFF_ VYSTM(1)LVFF VYSTM(54)LVFF 0 0 1 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.28515625 2 561.780636 1121.54672 1.2108 0.00068021 0.87188 0.00048981 2.0827 0.00117 561.7809883123836 99.981 0.172 93.805 93.74 93.912 -6.1757 20 11 3 0 0 0 0.03327 1 66747 66747 53.576 32.039 1 32143000 75124 2218 50099 51192 87605 87605 382 -0.009192508631713281 VYSVQHFPID 10 Unmodified _VYSVQHFPID_ 0 0 0 REV__nc|ENSG00000100416|O75648-2|TRMU REV__nc|ENSG00000100416|O75648-2|TRMU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.802490234375 2 602.803488 1203.59242 0.17993 0.00010846 -0.17362 -0.00010466 0.0063086 3.8028E-06 602.8034942324807 62.266 0.49517 62.233 61.926 62.421 -0.032787 68 25 4 0 0 0 0.16361 1 34022 34022 38.176 12.776 1 32261000 + 75125 18064 50100 51193 87606 87606 -0.0012288935658943956 VYSWRHFHT 9 Unmodified _VYSWRHFHT_ 0 0 0 ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3 ENSG00000183625|ENST00000395940|CCR3 ENSG00000183625|ENST00000395940|CCR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8019409179688 2 616.801614 1231.58868 NaN NaN NaN NaN NaN NaN NaN 88.902 1 88.398 87.898 88.898 -0.50423 0 0 0 0.85737 1 48615 48615 0.6015 0 1 75126 9170 50101 51194 87607 87607 -0.01785514339758265 VYTASIPAL 9 Unmodified _VYTASIPAL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 934.5249633789062 1 934.52441 933.517133 0.51041 0.00047699 -0.48932 -0.00045728 0.021093 1.9712E-05 934.5238892328973 68.204 0.38139 67.722 67.518 67.9 -0.48161 37 17 3 0 0 0 0.045537 2 37338 37234;37338 46.921 23.772 1 4489900 75127 3863 50102 51195 87608;87609 87609 0.0477155318297946 VYTASIPAL 9 Unmodified _VYTASIPAL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7648315429688 2 467.765843 933.517133 0.53273 0.00024919 -0.6493 -0.00030372 -0.11657 -5.4527E-05 467.7655232442307 68.218 0.36154 67.737 67.539 67.901 -0.48071 34 16 3 0 0 0 0.068777 2 37238 37238;37345 40.449 22.314 1 3418600 75128 3863 50102 51195 87610;87611 87610 0.0477155318297946 VYTASIPAL 9 Unmodified _VYTASIPAL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 934.5252075195312 1 934.52441 933.517133 1.0795 0.0010089 0.092278 8.6236E-05 1.1718 0.0010951 934.5243580133787 74.693 0.56734 68.517 68.213 68.78 -6.1757 48 29 2 0 0 0 0.027803 2 48886 48692;48886 56.541 14.447 1 18816000 75129 3863 50102 51195 87612;87613 87613 0.0477155318297946 VYTASIPAL 9 Unmodified _VYTASIPAL_ 0 0 0 ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;nc|ENSG00000125630|Q9H9Y6-4|POLR1B ENSG00000125630|ENST00000263331|POLR1B ENSG00000125630|ENST00000263331|POLR1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.7658996582031 2 467.765843 933.517133 0.97778 0.00045737 -0.22352 -0.00010456 0.75426 0.00035282 467.76585294465724 74.624 0.57993 68.449 68.252 68.832 -6.1757 51 30 2 0 0 0 0.068777 1 48893 48893 40.449 15.775 1 21530000 75130 3863 50102 51195 87614 87614 0.0477155318297946 VYTATITEI 9 Unmodified _VYTATITEI_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7740173339844 2 505.773865 1009.53318 0.47614 0.00024082 -0.52596 -0.00026601 -0.049815 -2.5195E-05 505.7736428225679 58.938 0.39945 58.938 58.723 59.123 0 59 17 4 0 0 0 0.078417 2 32875 32762;32875 38.151 30.225 1 50221000 75131 5007 50103 51196 87615;87616 87616 0.02879214629240323 VYTATITEI 9 Unmodified _VYTATITEI_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7740783691406 2 505.773865 1009.53318 0.51574 0.00026085 0.27976 0.00014149 0.7955 0.00040234 505.7741140773381 59.109 0.22356 59.048 58.943 59.166 -0.060719 15 10 2 0 0 0 0.12841 1 32217 32217 30.225 19.11 1 1772500 75132 5007 50103 51196 87617 87617 0.02879214629240323 VYTATITEI 9 Unmodified _VYTATITEI_ 0 0 0 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 ENSG00000138035|ENST00000447944|PNPT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7738647460938 2 505.773865 1009.53318 0.49055 0.00024811 0.34018 0.00017205 0.83072 0.00042016 505.77390220738226 66.811 0.56079 60.635 60.349 60.91 -6.1757 84 31 3 0 0 0 0.03327 3 43467 43339;43467;43603 53.576 44.407 1 159020000 75133 5007 50103 51196 87618;87619;87620 87619 0.02879214629240323 VYTCNECKHHV 11 Unmodified _VYTCNECKHHV_ 0 0 0 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000005339|ENST00000262367|CREBBP;ENSG00000100393|ENST00000263253|EP300 nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000100393|ENST00000263253|EP300 nc|ENSG00000005339|Q92793-2|CREBBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 666.7948608398438 2 666.794814 1331.57508 0.81949 0.00054643 -1.1092 -0.00073963 -0.28974 -0.0001932 666.7939829269029 70.238 0.29134 70.274 70.133 70.424 0.035515 35 13 3 0 0 0 0.58219 1 38630 38630 12.241 1.4167 1 8596000 75134 306;1813 50104 51197 87621 87621 -0.07744876225547159 VYTDCSNKL 9 Carbamidomethyl (C) _VYTDC(Carbamidomethyl (C))SNKL_ VYTDC(1)SNKL VYTDC(89)SNKL 0 1 0 nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L nc|ENSG00000183530|Q5THK1-2|PRR14L MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.25732421875 2 550.258056 1098.50156 0.37063 0.00020394 -0.34221 -0.0001883 0.028421 1.5639E-05 550.2579460356981 27.809 0.45345 24.686 24.432 24.885 -3.1237 69 23 4 0 0 0 0.0086722 2 15345 15345;15461 88.954 52.827 1 91934000 75135 9157 50105 51198 87622;87623 87622 855 -0.04375101396362879 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2948608398438 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 75.408 1 74.931 74.431 75.431 -0.47714 0 0 0 0.28328 1 41279 41279 34.402 16.267 1 75136 6855 50106 51199 87624 87624 0.015980294773271453 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2960205078125 2 566.295299 1130.57605 0.49814 0.0002821 0.35213 0.00019941 0.85027 0.00048151 566.2954654483044 74.843 0.40752 74.889 74.66 75.068 0.045967 57 18 4 0 0 0 0.037253 2 41201 41201;41310 65.235 65.235 1 56656000 75137 6855 50106 51199 87625;87626 87625 0.015980294773271453 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2960815429688 2 566.295299 1130.57605 1.2841 0.00072721 -0.78987 -0.0004473 0.49427 0.0002799 566.2942106470734 86.972 1.7721 80.796 79.957 81.729 -6.1757 203 96 4 0 0 0 0.037253 4 57376 57112;57233;57376;57527 65.235 38.351 1 48035000 75138 6855 50106 51199 87627;87628;87629;87630 87629 0.015980294773271453 VYTDFAFRI 9 Unmodified _VYTDFAFRI_ 0 0 0 ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF ENSG00000162408|ENST00000377705|NOL9 ENSG00000162408|ENST00000377705|NOL9 MSMS AL20221201_MKP_PDAC_01 4 566.3421630859375 2 566.295299 1130.57605 NaN NaN NaN NaN NaN NaN NaN 88.068 1 81.892 81.392 82.392 -6.1757 0 0 0 0.18978 1 58089 58089 41.84 18.691 1 75139 6855 50106 51199 87631 87631 0.015980294773271453 VYTDILIGL 9 Unmodified _VYTDILIGL_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7953186035156 2 503.794601 1005.57465 1.204 0.00060655 -0.95536 -0.00048131 0.24861 0.00012525 503.79494558492695 100.29 0.15697 94.112 94.03 94.187 -6.1757 24 9 3 0 0 0 0.012158 1 67020 67020 74.396 17.855 1 86844000 75140 6082 50107 51200 87632 87632 0.07208395388579447 VYTDILIGL 9 Unmodified _VYTDILIGL_ 0 0 0 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 ENSG00000150990|ENST00000308736|DHX37 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 503.794601 1005.57465 2.0322 0.0010238 -0.96367 -0.00048549 1.0685 0.0005383 503.79385078344313 94.31 0.25153 94.324 94.212 94.464 0.014244 0.10632 -4.0475E-06 NaN 74.396 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 750650 75141 6082 50107 51200 0.07208395388579447 VYTDRFHLI 9 Unmodified _VYTDRFHLI_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.54541015625 3 388.545108 1162.61349 0.47123 0.00018309 -0.59023 -0.00022933 -0.11901 -4.624E-05 388.54478027334045 52.619 0.2926 52.185 52.044 52.336 -0.43367 33 14 3 0 0 0 0.50598 1 28411 28411 7.1017 0.90987 1 9745700 75142 4143 50108 51201 87633 87633 0.03869120742956511 VYTDVAYYL 9 Unmodified _VYTDVAYYL_ 0 0 0 ENST00000504406.5_1_5:176829295-176830555:-|nuORF;ENST00000502854.5_1_5:176829295-176830776:-|nuORF;ENSG00000131187|ENST00000253496|F12 ENST00000504406.5_1_5:176829295-176830555:-|nuORF ENST00000504406.5_1_5:176829295-176830555:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7739868164062 2 553.773865 1105.53318 0.9043 0.00050078 -1.4191 -0.00078584 -0.51476 -0.00028506 553.7732236825915 83.067 0.25604 76.891 76.808 77.065 -6.1757 20 13 2 0 0 0 0.12841 1 54619 54619 30.225 1.738 1 8890100 75143 4307 50109 51202 87634 87634 -0.015367853707630275 VYTDWIMAL 9 Oxidation (M) _VYTDWIM(Oxidation (M))AL_ VYTDWIM(1)AL VYTDWIM(47)AL 0 0 1 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2758178710938 2 564.275718 1126.53688 0.61202 0.00034535 0.2059 0.00011618 0.81792 0.00046153 564.2758024081203 90.25 0.35954 89.748 89.567 89.926 -0.50172 38 16 3 0 0 0 0.045537 1 49379 49379 46.921 29.979 1 2317700 75144 7991 50110 51203 87635 87635 1359 -0.02132438868557074 VYTDWIMAL 9 Oxidation (M) _VYTDWIM(Oxidation (M))AL_ VYTDWIM(1)AL VYTDWIM(74)AL 0 0 1 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2794189453125 2 564.275718 1126.53688 0.7326 0.00041339 0.80075 0.00045184 1.5334 0.00086523 564.2761852021231 89.678 0.29399 89.72 89.592 89.886 0.042183 17 10 2 0 0 0 0.012158 1 49878 49878 74.396 29.989 1 9144200 75145 7991 50110 51203 87636 87636 1359 -0.02132438868557074 VYTDWIMAL 9 Unmodified _VYTDWIMAL_ 0 0 0 nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;nc|ENSG00000170471|Q86X10-4|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB nc|ENSG00000170471|Q86X10-3|RALGAPB MSMS AL20221201_MKP_PDAC_01 4 556.2786865234375 2 556.27826 1110.54197 NaN NaN NaN NaN NaN NaN NaN 101.13 1 94.959 94.459 95.459 -6.1757 0 0 0 0.036587 1 67796 67796 63.563 35.076 1 75146 7991 50110 51204 87637 87637 -0.008881350059255055 VYTEAIADI 9 Unmodified _VYTEAIADI_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 994.5077514648438 1 994.509154 993.501877 0.32378 0.000322 -0.13343 -0.0001327 0.19034 0.0001893 994.5090158411876 60.057 0.37435 60.057 59.879 60.254 0 50 16 4 0 0 0 0.0048787 2 33428 33428;33527 117.6 43.176 1 24385000 75147 3879 50111 51205 87638;87639 87638 0.004866415951369163 VYTEAIADI 9 Unmodified _VYTEAIADI_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7578125 2 497.758215 993.501877 0.62768 0.00031243 -0.0033135 -1.6493E-06 0.62437 0.00031078 497.7582041582882 60.051 0.34226 60.051 59.857 60.199 0 40 15 3 0 0 0 0.0083087 2 33433 33433;33542 97.075 29.731 1 18554000 75148 3879 50111 51205 87640;87641 87640 0.004866415951369163 VYTEAIADI 9 Unmodified _VYTEAIADI_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 994.509765625 1 994.509154 993.501877 0.47916 0.00047653 -0.1756 -0.00017464 0.30356 0.0003019 994.5087857091975 67.918 0.47672 61.743 61.499 61.975 -6.1757 48 27 2 0 0 0 0.0031966 2 44316 44174;44316 125.62 32.802 1 42867000 75149 3879 50111 51205 87642;87643 87643 0.004866415951369163 VYTEAIADI 9 Unmodified _VYTEAIADI_ 0 0 0 ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK ENSG00000125755|ENST00000245934|SYMPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.7578735351562 2 497.758215 993.501877 0.68438 0.00034065 -0.044322 -2.2062E-05 0.64006 0.00031859 497.75816171332923 67.837 0.47672 61.661 61.499 61.975 -6.1757 56 27 3 0 0 0 0.0083087 2 44330 44182;44330 97.075 29.731 1 43868000 75150 3879 50111 51205 87644;87645 87645 0.004866415951369163 VYTEGERLYLF 11 Unmodified _VYTEGERLYLF_ 0 0 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.3567504882812 2 695.356085 1388.69762 0.3883 0.00027001 0.37843 0.00026315 0.76673 0.00053315 695.3562210999614 71.083 0.22171 70.606 70.483 70.705 -0.47735 23 9 3 0 0 0 0.43683 1 38881 38881 29.437 17.197 1 1512200 75151 9489 50112 51206 87646 87646 0.018816070491766368 VYTELGVSF 9 Unmodified _VYTELGVSF_ 0 0 0 REV__ENSG00000181092|ENST00000320741|ADIPOQ REV__ENSG00000181092|ENST00000320741|ADIPOQ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7598571777344 2 507.760758 1013.50696 0.44548 0.0002262 -2.8417 -0.0014429 -2.3962 -0.0012167 507.7593322767689 56.79 0.36494 56.79 56.609 56.974 0 31 15 3 0 0 0 0.2001 1 31618 31618 23.148 0 1 5532600 + 75152 23190 50113 51207 87647 87647 0.0007494545776580708 VYTEYYQSF 9 Unmodified _VYTEYYQSF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2660522460938 2 600.266404 1198.51826 0.60272 0.00036179 -1.6961 -0.0010181 -1.0934 -0.00065633 600.2652924845509 64.038 0.27097 63.553 63.447 63.718 -0.48512 32 13 3 0 0 0 0.1773 1 34922 34922 25.399 4.9848 1 3564500 + 75153 17502 50114 51208 87648 87648 -0.07306277238785697 VYTEYYQSF 9 Unmodified _VYTEYYQSF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 600.266404 1198.51826 -0.01468 -8.8116E-06 -2.8763 -0.0017265 -2.891 -0.0017354 600.2643713950451 63.456 0.39166 63.456 63.244 63.636 0 -0.04829 -0.00059883 NaN 25.399 48 20 3 NaN NaN NaN NaN 0 NaN NaN 0 8721500 + 75154 17502 50114 51208 -0.07306277238785697 VYTEYYQSF 9 Unmodified _VYTEYYQSF_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 600.266404 1198.51826 0.60272 0.00036179 -1.6961 -0.0010181 -1.0934 -0.00065633 600.2652924845509 64.038 0.27097 63.553 63.447 63.718 -0.48512 0.04829 0.00081802 NaN 25.399 32 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3564500 + 75155 17502 50114 51208 -0.07306277238785697 VYTFGLGQF 9 Unmodified _VYTFGLGQF_ 0 0 0 nc|ENSG00000156313|Q92834-5|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;ENSG00000156313|ENST00000645032|RPGR nc|ENSG00000156313|Q92834-5|RPGR nc|ENSG00000156313|Q92834-5|RPGR MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2647094726562 2 516.263468 1030.51238 1.2126 0.00062601 -0.51824 -0.00026755 0.69434 0.00035846 516.2634595461424 94.273 0.54848 88.098 87.823 88.372 -6.1757 45 31 2 0 0 0 0.038285 1 62395 62395 50.855 32.72 1 6631100 75156 6448 50115 51209 87649 87649 -0.0016533095977138146 VYTFLLGF 8 Unmodified _VYTFLLGF_ 0 0 0 ENSG00000132671|ENST00000255008|SSTR4 ENSG00000132671|ENST00000255008|SSTR4 ENSG00000132671|ENST00000255008|SSTR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.2638244628906 2 480.265479 958.516405 NaN NaN NaN NaN NaN NaN NaN 80.182 1 80.182 79.682 80.682 0 0 0 0 0.95201 1 44526 44526 10.183 2.2732 1 75157 4434 50116 51210 87650 87650 0.03548758533952423 VYTFQFQDF 9 Unmodified _VYTFQFQDF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7759399414062 2 597.776939 1193.53933 0.55622 0.0003325 -1.2093 -0.00072291 -0.65311 -0.00039042 597.7760615090504 85.056 0.4072 84.555 84.365 84.772 -0.5015 48 20 3 0 0 0 0.1685 2 46583 46489;46583 36.044 25.245 1 6139300 75158 2128 50117 51211 87651;87652 87652 -0.049702671392424236 VYTFQFQDF 9 Unmodified _VYTFQFQDF_ 0 0 0 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 597.776939 1193.53933 0.018932 1.1317E-05 1.16 0.00069343 1.1789 0.00070474 598.2786197983952 84.528 0.12428 84.528 84.465 84.589 0 -0.013432 0.0026065 NaN 36.044 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 355800 75159 2128 50117 51211 -0.049702671392424236 VYTGDALRI 9 Unmodified _VYTGDALRI_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2803344726562 2 504.279649 1006.54475 -0.25484 -0.00012851 -0.21829 -0.00011008 -0.47313 -0.00023859 504.27995187837274 48.651 0.26967 48.651 48.491 48.761 0 34 12 3 0 0 0 0.032796 1 26670 26670 53.833 5.4869 1 6402400 75160 374 50118 51212 87653 87653 0.04173456443209034 VYTGDALRI 9 Unmodified _VYTGDALRI_ 0 0 0 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 ENSG00000008018|ENST00000262193|PSMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2817687988281 2 504.279649 1006.54475 -0.17173 -8.6597E-05 2.179 0.0010988 2.0073 0.0010122 504.28139253149556 48.828 0.40563 48.456 48.35 48.755 -0.37172 41 20 4 0 0 0 0.07087 1 26222 26222 39.95 1.9757 1 10165000 75161 374 50118 51212 87654 87654 0.04173456443209034 VYTGFLDYF 9 Unmodified _VYTGFLDYF_ 0 0 0 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 ENSG00000075568|ENST00000186436|TMEM131 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2681274414062 2 562.768583 1123.52261 1.1975 0.00067389 -0.67781 -0.00038145 0.51965 0.00029244 563.2697583100734 100.72 0.06929 94.549 94.515 94.584 -6.1757 8 4 2 0 0 0 0.10925 1 67437 67437 32.117 6.7177 1 18829000 75162 1161 50119 51213 87655 87655 -0.034207680251938655 VYTGIDHHW 9 Unmodified _VYTGIDHHW_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.5133972167969 3 376.513807 1126.51959 -0.63354 -0.00023854 0.4642 0.00017478 -0.16935 -6.3761E-05 376.5139725184153 34.415 0.23251 34.415 34.308 34.54 0 29 11 4 0 0 0 0.052168 1 18132 18132 39.95 31.505 1 7303200 75163 7266 50120 51214 87656 87656 -0.03860598359347023 VYTGIDHHW 9 Unmodified _VYTGIDHHW_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.5137939453125 3 376.513807 1126.51959 -0.26833 -0.00010103 -0.035266 -1.3278E-05 -0.30359 -0.00011431 376.5138307384253 34.593 0.3876 34.402 34.13 34.518 -0.19131 46 17 4 0 0 0 0.14602 1 18085 18085 26.268 14.027 1 20960000 75164 7266 50120 51214 87657 87657 -0.03860598359347023 VYTGIDHHW 9 Unmodified _VYTGIDHHW_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.5143127441406 3 376.513807 1126.51959 0.95011 0.00035773 0.18255 6.8732E-05 1.1327 0.00042646 376.51390593132874 38.512 0.46415 34.143 33.9 34.364 -4.3689 90 29 4 0 0 0 0.052168 2 22654 22654;22790 32.786 23.403 1 142500000 75165 7266 50120 51214 87658;87659 87658 -0.03860598359347023 VYTGIDHHW 9 Unmodified _VYTGIDHHW_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2677001953125 2 564.267073 1126.51959 0.61319 0.000346 1.2076 0.00068143 1.8208 0.0010274 564.2675828835371 38.508 0.35747 34.139 33.932 34.29 -4.3689 53 22 3 0 0 0 0.010877 1 22701 22701 77.984 40.01 1 36148000 75166 7266 50120 51214 87660 87660 -0.03860598359347023 VYTGLFYKL 9 Unmodified _VYTGLFYKL_ 0 0 0 ENSG00000170917|ENST00000304430|NUDT6;nc|ENSG00000170917|P53370-2|NUDT6 ENSG00000170917|ENST00000304430|NUDT6 ENSG00000170917|ENST00000304430|NUDT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3108520507812 2 552.310418 1102.60628 NaN NaN NaN NaN NaN NaN NaN 71.322 1 71.361 70.861 71.861 0.039024 0 0 0 0.074615 1 39264 39264 49.933 19.296 1 75167 8042 50121 51215 87661 87661 0.059083881425067375 VYTGLFYKL 9 Unmodified _VYTGLFYKL_ 0 0 0 ENSG00000170917|ENST00000304430|NUDT6;nc|ENSG00000170917|P53370-2|NUDT6 ENSG00000170917|ENST00000304430|NUDT6 ENSG00000170917|ENST00000304430|NUDT6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3124389648438 2 552.310418 1102.60628 NaN NaN NaN NaN NaN NaN NaN 71.513 1 71.552 71.052 72.052 0.039024 0 0 0 0.15549 1 39369 39369 36.127 16.688 1 75168 8042 50121 51215 87662 87662 0.059083881425067375 VYTHEVVTL 9 Unmodified _VYTHEVVTL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7880859375 2 530.787307 1059.56006 -0.036981 -1.9629E-05 -0.031099 -1.6507E-05 -0.068079 -3.6136E-05 530.7873300174992 45.08 0.30654 45.08 44.943 45.249 0 37 15 3 0 0 0 0.0087873 1 24525 24525 117.6 32.242 1 27290000 75169 7969 50122 51216 87663 87663 0.032663232404502196 VYTHEVVTL 9 Unmodified _VYTHEVVTL_ 0 0 0 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 ENSG00000170312|ENST00000395284|CDK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7876586914062 2 530.787307 1059.56006 1.0628 0.00056412 -0.2433 -0.00012914 0.81949 0.00043497 530.7869883145821 50.52 0.4382 44.981 44.725 45.163 -5.5391 58 27 3 0 0 0 0.0086722 1 31745 31745 89.427 4.0701 1 62308000 75170 7969 50122 51216 87664 87664 0.032663232404502196 VYTHFLSSF 9 Unmodified _VYTHFLSSF_ 0 0 0 ENSG00000174032|ENST00000519676|SLC25A30;ENST00000523988.5_1_13:45973026-45978512:-|nuORF;nc|ENSG00000174032|Q5SVS4-2|SLC25A30 ENSG00000174032|ENST00000519676|SLC25A30 ENSG00000174032|ENST00000519676|SLC25A30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7752075195312 2 550.7742 1099.53385 0.97667 0.00053793 1.4032 0.00077283 2.3798 0.0013108 550.7750412981624 63.861 0.30104 63.851 63.695 63.996 -0.010532 35 14 3 0 0 0 0.095405 1 34923 34923 34.102 15.956 1 10879000 75171 8386 50123 51217 87665 87665 -0.011939459310497114 VYTHIYVY 8 Unmodified _VYTHIYVY_ 0 0 0 ENST00000407010.6_2_7:16128723-16129239:-|nuORF ENST00000407010.6_2_7:16128723-16129239:-|nuORF ENST00000407010.6_2_7:16128723-16129239:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2702026367188 2 529.271293 1056.52803 1.5785 0.00083543 -0.72509 -0.00038377 0.85336 0.00045166 529.2712842736862 41.868 0.39747 37.26 37.014 37.412 -4.6079 46 24 2 0 0 0 0.2655 2 25073 25073;25213 59.795 16.827 1 13392000 75172 12939 50124 51218 87666;87667 87666 0.0020295555730172055 VYTHNLYYL 9 Unmodified _VYTHNLYYL_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.3001708984375 2 593.300581 1184.58661 0.42747 0.00025362 -0.118 -7.0011E-05 0.30946 0.0001836 593.3004770701147 55.621 0.37499 55.144 54.945 55.32 -0.47798 59 17 4 0 0 0 0.031062 2 30131 30131;30239 54.774 27.89 1 19406000 75173 10211 50125 51219 87668;87669 87668 0.001700121317526282 VYTHNLYYL 9 Unmodified _VYTHNLYYL_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3014526367188 2 593.300581 1184.58661 -0.054367 -3.2256E-05 2.0171 0.0011967 1.9627 0.0011645 593.3009653948023 55.254 0.43737 55.185 55.019 55.456 -0.068737 58 21 4 0 0 0 0.0090851 2 29974 29974;30071 85.357 51.254 1 14375000 75174 10211 50125 51219 87670;87671 87670 0.001700121317526282 VYTHNLYYL 9 Unmodified _VYTHNLYYL_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3018188476562 2 593.300581 1184.58661 0.87737 0.00052055 0.4624 0.00027434 1.3398 0.00079489 593.300584155764 60.773 0.67186 54.625 54.324 54.996 -6.1478 92 35 4 0 0 0 0.010818 3 39005 39005;39122;39250 78.149 49.663 1 158400000 75175 10211 50125 51219 87672;87673;87674 87672 0.001700121317526282 VYTHNLYYL 9 Unmodified _VYTHNLYYL_ 0 0 0 ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP ENSG00000198954|ENST00000361983|KIFBP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 593.300581 1184.58661 -0.085139 -5.0513E-05 -2.0701 -0.0012282 -2.1552 -0.0012787 593.2979544255576 55.067 0.14394 55.067 55.005 55.149 0 -0.0653 -0.0024851 NaN 85.357 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 538040 75176 10211 50125 51219 0.001700121317526282 VYTHSYLCF 9 Unmodified _VYTHSYLCF_ 0 0 0 ENSG00000188833|ENST00000371506|ENTPD8;nc|ENSG00000188833|Q5MY95-2|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7646484375 2 566.760235 1131.50592 0.22881 0.00012968 3.3642 0.0019067 3.593 0.0020364 567.2627872277346 72.113 0.41798 72.113 71.84 72.258 0 46 19 3 0 0 0 0.30562 1 40201 40201 16.942 2.104 1 2437800 75177 9702 50126 51220 87675 87675 -0.05457592182801818 VYTHSYLCF 9 Carbamidomethyl (C) _VYTHSYLC(Carbamidomethyl (C))F_ VYTHSYLC(1)F VYTHSYLC(82)F 0 1 0 ENSG00000188833|ENST00000371506|ENTPD8;nc|ENSG00000188833|Q5MY95-2|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2705078125 2 595.270967 1188.52738 -0.024444 -1.4551E-05 4.2798 0.0025476 4.2553 0.0025331 595.2720823260078 62.102 0.27903 55.926 55.723 56.002 -6.1757 32 15 3 0 0 0 0.0095811 2 39978 39978;39998 81.613 22.934 1 32738000 75178 9702 50126 51221 87676;87677 87676 887 -0.059342071540868346 VYTHVLSAF 9 Unmodified _VYTHVLSAF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.7763061523438 2 518.776742 1035.53893 -0.79328 -0.00041154 -0.31813 -0.00016504 -1.1114 -0.00057658 518.7765315377767 56.191 0.37222 55.705 55.451 55.823 -0.48554 30 18 2 0 0 0 0.052168 1 30524 30524 44.407 27.465 1 7559900 75179 5335;15683 50127 51222 87678 87678 0.022583579315551106 VYTHVLSAF 9 Unmodified _VYTHVLSAF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.776123046875 2 518.776742 1035.53893 -0.32522 -0.00016872 -0.18738 -9.7209E-05 -0.51261 -0.00026593 518.7767539946465 55.841 0.25854 55.772 55.626 55.885 -0.068737 34 13 3 0 0 0 0.0083087 1 30324 30324 97.075 46.22 1 20140000 75180 5335;15683 50127 51222 87679 87679 0.022583579315551106 VYTHVLSAF 9 Unmodified _VYTHVLSAF_ 0 0 0 ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1;ENST00000590387.1_1_18:21107838-21109292:+|nuORF ENSG00000141452|ENST00000269221|RMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7767944335938 2 518.776742 1035.53893 0.63941 0.00033171 0.50908 0.0002641 1.1485 0.00059581 518.7763963928492 62.064 0.6189 55.889 55.537 56.156 -6.1757 68 34 3 0 0 0 0.0090851 2 39923 39923;40052 85.357 43.262 1 41996000 75181 5335;15683 50127 51222 87680;87681 87680 0.022583579315551106 VYTHWEHPL 9 Unmodified _VYTHWEHPL_ 0 0 0 nc|ENSG00000115970|Q6YHU6-3|THADA;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF nc|ENSG00000115970|Q6YHU6-3|THADA nc|ENSG00000115970|Q6YHU6-3|THADA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.5476989746094 3 394.529458 1180.56654 0.89362 0.00035256 2.058 0.00081196 2.9517 0.0011645 394.5304071789733 43.156 0.21812 38.391 38.258 38.477 -4.7648 23 14 2 0 0 0 0.19758 1 26196 26196 13.042 8.853 1 6486200 75182 3181 50128 51223 87682 87682 -0.016517388081865647 VYTIQSDVW 9 Unmodified _VYTIQSDVW_ 0 0 0 ENSG00000128052|ENST00000263923|KDR ENSG00000128052|ENST00000263923|KDR ENSG00000128052|ENST00000263923|KDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7778930664062 2 555.776939 1109.53933 0.86003 0.00047798 1.4399 0.00080027 2.2999 0.0012783 555.7775475461525 72.804 0.39579 72.328 72.124 72.519 -0.47588 34 15 3 0 0 0 0.28047 1 39895 39895 18.135 3.2967 1 3263200 75183 4046 50129 51224 87683 87683 -0.01106267139243755 VYTIVISCMH 10 Unmodified _VYTIVISCMH_ 0 0 0 REV__ENSG00000180988|ENST00000317037|OR52N2 REV__ENSG00000180988|ENST00000317037|OR52N2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.29345703125 2 583.290845 1164.56714 0.15707 9.1616E-05 4.2557 0.0024823 4.4128 0.0025739 583.2928640182361 78.043 0.22843 78.043 77.943 78.172 0 13 9 2 0 0 0 0.6606 1 43386 43386 7.2892 2.5332 1 409860 + 75184 23181 50130 51225 87684 87684 -0.008564034749952043 VYTIVISCMH 10 Unmodified _VYTIVISCMH_ 0 0 0 REV__ENSG00000180988|ENST00000317037|OR52N2 REV__ENSG00000180988|ENST00000317037|OR52N2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 583.290845 1164.56714 0.15707 9.1616E-05 4.2557 0.0024823 4.4128 0.0025739 583.2928640182361 78.043 0.22843 78.043 77.943 78.172 0 0 0 NaN 7.2892 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 409860 + 75185 23181 50130 51225 -0.008564034749952043 VYTKANPTF 9 Unmodified _VYTKANPTF_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7737426757812 2 520.7742 1039.53385 0.2524 0.00013144 -0.26178 -0.00013633 -0.0093768 -4.8832E-06 520.7743248174197 31.162 0.22353 31.162 31.031 31.255 0 22 10 3 0 0 0 0.010301 1 16204 16204 79.596 37.502 1 4387700 75186 10083 50131 51226 87685 87685 0.015660540689168556 VYTKANPTF 9 Unmodified _VYTKANPTF_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7738037109375 2 520.7742 1039.53385 0.2277 0.00011858 0.84877 0.00044202 1.0765 0.0005606 520.7744482830421 31.15 0.26962 31.047 30.891 31.161 -0.10269 22 10 3 0 0 0 0.012228 1 16167 16167 74.2 36.226 1 6015800 75187 10083 50131 51226 87686 87686 0.015660540689168556 VYTKANPTF 9 Unmodified _VYTKANPTF_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.7749633789062 2 520.7742 1039.53385 -0.20218 -0.00010529 1.1882 0.00061876 0.98597 0.00051347 520.7747697334347 30.973 0.20266 31.003 30.882 31.084 0.030106 14 8 2 0 0 0 0.15471 1 16205 16205 27.629 7.1752 1 1355800 75188 10083 50131 51226 87687 87687 0.015660540689168556 VYTKANPTF 9 Unmodified _VYTKANPTF_ 0 0 0 nc|ENSG00000198369|Q7Z698-2|SPRED2;ENSG00000198369|ENST00000356388|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 nc|ENSG00000198369|Q7Z698-2|SPRED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7742919921875 2 520.7742 1039.53385 0.94374 0.00049147 -1.0069 -0.00052434 -0.063119 -3.2871E-05 520.7735370100444 35.155 0.44164 31.06 30.817 31.259 -4.0951 45 25 2 0 0 0 0.010301 2 20406 20270;20406 79.596 37.502 1 50195000 75189 10083 50131 51226 87688;87689 87689 0.015660540689168556 VYTKVSAYL 9 Unmodified _VYTKVSAYL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2928466796875 2 522.292225 1042.5699 0.27237 0.00014225 -0.50409 -0.00026328 -0.23173 -0.00012103 522.2919495527124 48.555 0.25702 48.184 48.021 48.278 -0.37172 26 12 3 0 0 0 0.013118 1 26039 26039 71.708 19.44 1 10895000 75190 4954 50132 51227 87690 87690 0.05031511245783804 VYTKVSAYL 9 Unmodified _VYTKVSAYL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.29345703125 2 522.292225 1042.5699 0.31203 0.00016297 0.39978 0.0002088 0.71181 0.00037177 522.2922418697532 48.275 0.29857 48.237 48.066 48.364 -0.038643 44 14 4 0 0 0 0.0081887 1 25994 25994 93.166 53.209 1 6901300 75191 4954 50132 51227 87691 87691 0.05031511245783804 VYTLDEELPKR 11 Unmodified _VYTLDEELPKR_ 0 0 0 ENSG00000066135|ENST00000372396|KDM4A;nc|ENSG00000066135|O75164-2|KDM4A ENSG00000066135|ENST00000372396|KDM4A ENSG00000066135|ENST00000372396|KDM4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.9141235351562 3 454.913637 1361.71908 0.21646 9.8469E-05 0.30327 0.00013796 0.51973 0.00023643 454.9136641051882 35.661 0.14259 35.686 35.602 35.744 0.024967 11 6 2 0 0 0 0.67037 1 18867 18867 7.0371 2.6309 1 3659200 75192 929 50133 51228 87692 87692 0.052689920778675514 VYTLDIPVL 9 Unmodified _VYTLDIPVL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.8016967773438 2 516.802426 1031.5903 0.5988 0.00030946 1.1268 0.00058235 1.7256 0.00089181 516.8029769668022 100.66 0.18157 94.48 94.389 94.57 -6.1757 34 12 4 0 0 0 0.0081063 1 67342 67342 93.883 15.899 1 304610000 75193 6480 50134 51229 87693 87693 0.07576681905607074 VYTLDIPVLF 10 Unmodified _VYTLDIPVLF_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.3370971679688 2 590.336633 1178.65871 0.59494 0.00035122 -0.53182 -0.00031395 0.063125 3.7265E-05 590.3362453033589 101.92 0.079987 95.743 95.7 95.78 -6.1757 9 3 3 0 0 0 0.018732 1 68421 68421 104.8 70.697 1 13376000 75194 6480 50135 51230 87694 87694 0.07652926485434364 VYTLHRETF 9 Unmodified _VYTLHRETF_ 0 0 0 ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 ENSG00000175305|ENST00000308108|CCNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.2055358886719 3 389.204862 1164.59276 -0.22831 -8.8858E-05 0.14547 5.6618E-05 -0.082837 -3.224E-05 389.2052817087061 32.74 0.23479 32.581 32.451 32.686 -0.15918 16 9 2 0 0 0 0.11005 1 17071 17071 32.037 15.888 1 1803300 75195 8506 50136 51231 87695 87695 0.017045303632812647 VYTLLQSII 9 Unmodified _VYTLLQSII_ 0 0 0 ENSG00000136048|ENST00000258534|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 ENSG00000136048|ENST00000258534|DRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.3170166015625 2 525.3157 1048.61685 0.69945 0.00036743 0.70773 0.00037178 1.4072 0.00073921 525.3160557603284 99.599 0.13269 93.424 93.341 93.474 -6.1757 22 8 3 0 0 0 0.026094 1 66357 66357 57.471 2.6978 1 66310000 75196 4781 50137 51232 87696 87696 0.09448370796940253 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8059692382812 2 530.8055 1059.59645 0.020587 1.0928E-05 0.82493 0.00043788 0.84552 0.00044881 530.8058663811613 65.693 0.46115 65.209 64.876 65.337 -0.48428 50 20 4 0 0 0 0.0077963 1 35866 35866 109.63 63.93 1 12590000 75197 8359 50138 51233 87697 87697 0.06903200137116983 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8057250976562 2 530.8055 1059.59645 0.6284 0.00033356 -0.36701 -0.00019481 0.26139 0.00013875 530.8053051322308 65.203 0.40938 65.203 64.978 65.387 7.6294E-06 66 19 6 0 0 0 0.0036753 2 35655 35655;35762 123.1 77.397 1 128940000 75198 8359 50138 51233 87698;87699 87698 0.06903200137116983 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8056030273438 2 530.8055 1059.59645 0.8512 0.00045182 0.035254 1.8713E-05 0.88645 0.00047053 530.8053213609886 70.1 1.0616 63.924 63.665 64.726 -6.1757 110 58 3 0 0 0 0.0077963 4 45805 45675;45788;45805;45929 109.63 75.228 1 129320000 75199 8359 50138 51233 87700;87701;87702;87703 87702 0.06903200137116983 VYTLLTTHL 9 Unmodified _VYTLLTTHL_ 0 0 0 nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL nc|ENSG00000173715|Q8N6T0-5|TOP6BL MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.8057861328125 2 530.8055 1059.59645 1.0108 0.00053652 -0.33926 -0.00018008 0.67151 0.00035644 530.8052589548662 72.057 0.93111 65.881 65.481 66.412 -6.1757 73 49 2 0 0 0 0.0021514 2 47216 47082;47216 131.3 75.228 1 58245000 75200 8359 50138 51233 87704;87705 87705 0.06903200137116983 VYTLPAKKWHW 11 Unmodified _VYTLPAKKWHW_ 0 0 0 nc|ENSG00000121964|Q4AE62-3|GTDC1;ENST00000491448.5_1_2:144764747-144969145:-|nuORF;nc|ENSG00000121964|Q4AE62-2|GTDC1;nc|ENSG00000121964|Q4AE62-4|GTDC1;ENSG00000121964|ENST00000682281|GTDC1 nc|ENSG00000121964|Q4AE62-3|GTDC1 nc|ENSG00000121964|Q4AE62-3|GTDC1 MSMS AL20221201_MKP_PDAC_01 4 476.9310913085938 3 476.931073 1427.77139 NaN NaN NaN NaN NaN NaN NaN 85.365 1 79.189 78.689 79.689 -6.1757 0 0 0 0.90499 1 56217 56217 7.0371 2.3212 1 75201 3613 50139 51234 87706 87706 0.07461620002163727 VYTLRTDNI 9 Unmodified _VYTLRTDNI_ 0 0 0 nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 nc|ENSG00000198399|Q9NZM3-2|ITSN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7957763671875 2 547.795663 1093.57677 -0.23877 -0.0001308 -0.47992 -0.0002629 -0.71869 -0.0003937 547.7951946627896 41.47 0.4606 41.47 41.344 41.804 0 40 23 3 0 0 0 0.085319 1 22511 22511 36.506 0.37917 1 20957000 75202 10087 50140 51235 87707 87707 0.03372824126358864 VYTLVLSEL 9 Unmodified _VYTLVLSEL_ 0 0 0 REV__ENSG00000162645|ENST00000370466|GBP2 REV__ENSG00000162645|ENST00000370466|GBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.8016967773438 2 518.799883 1035.58521 1.1893 0.00061702 -0.18641 -9.6708E-05 1.0029 0.00052031 518.7997220020795 88.457 0.71478 82.281 81.939 82.653 -6.1757 119 39 4 0 0 0 0.18465 1 58192 58192 24.674 5.2349 1 173720000 + 75203 19093 50141 51236 87708 87708 0.06884378042991557 VYTNYFLAQN 10 Unmodified _VYTNYFLAQN_ 0 0 0 ENST00000370550.9_1_1:87572413-87572473:+|nuORF ENST00000370550.9_1_1:87572413-87572473:+|nuORF ENST00000370550.9_1_1:87572413-87572473:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8004150390625 2 616.800946 1231.58734 NaN NaN NaN NaN NaN NaN NaN 89.152 1 88.647 88.147 89.147 -0.50423 0 0 0 0.99091 1 48747 48747 1.6526 0 1 75204 12336 50142 51237 87709 87709 -0.01919193219191584 VYTPLWQT 8 Unmodified _VYTPLWQT_ 0 0 0 REV__ENST00000490638.5_1_9:35660467-35660770:-|nuORF REV__ENST00000490638.5_1_9:35660467-35660770:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2718811035156 2 504.263468 1006.51238 -0.29258 -0.00014754 0.8155 0.00041123 0.52291 0.00026369 504.2637367151767 66.421 0.48771 65.938 65.728 66.216 -0.48324 99 24 5 0 0 0 0.74163 1 36414 36414 13.508 0.97634 1 96010000 + 75205 27880 50143 51238 87710 87710 0.009386690402379827 VYTPPHQQK 9 Unmodified _VYTPPHQQK_ 0 0 0 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 REV__nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.77490234375 2 549.290548 1096.56654 0.83932 0.00046103 0.66017 0.00036263 1.4995 0.00082366 549.2907683100451 50.558 0.26672 50.145 50.051 50.318 -0.41351 24 12 3 0 0 0 0.19613 1 27300 27300 7.9102 0 1 5441000 + 75206 23760 50144 51239 87711 87711 0.022122611917893664 VYTPTDTLVF 10 Unmodified _VYTPTDTLVF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3004760742188 2 578.300247 1154.58594 0.2137 0.00012358 0.99252 0.00057398 1.2062 0.00069756 578.3005264816111 78.818 0.49005 78.332 78.084 78.574 -0.48596 61 19 4 0 0 0 0.20195 2 43215 43105;43215 48.346 26.599 1 11926000 75207 8288 50145 51240 87712;87713 87713 0.014831726920419896 VYTPTDTLVF 10 Unmodified _VYTPTDTLVF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.301025390625 2 578.300247 1154.58594 1.2248 0.00070831 0.24974 0.00014443 1.4746 0.00085274 578.300357250885 86.38 0.62199 80.204 79.87 80.492 -6.1757 80 33 3 0 0 0 0.06987 3 56830 56830;56960;57084 64.236 47.123 1 65597000 75208 8288 50145 51240 87714;87715;87716 87714 0.014831726920419896 VYTPTDTLVF 10 Unmodified _VYTPTDTLVF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 578.300247 1154.58594 0.63877 0.0003694 1.3609 0.000787 1.9996 0.0011564 578.8033460259247 78.281 0.6002 78.334 78.177 78.777 0.052452 0.001882 6.3749E-05 NaN 48.346 40 24 3 NaN NaN NaN NaN 0 NaN NaN 0 2103900 75209 8288 50145 51240 0.014831726920419896 VYTPVASRQSL 11 Unmodified _VYTPVASRQSL_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.8355712890625 2 610.83532 1219.65609 -0.099491 -6.0772E-05 1.5171 0.0009267 1.4176 0.00086592 610.8360287762307 37.379 0.23835 37.108 36.992 37.23 -0.27133 24 9 3 0 0 0 0.038834 1 19622 19622 53.317 15.141 1 5633100 75210 1046 50146 51241 87717 87717 0.05504471080530493 VYTPVASRQSL 11 Unmodified _VYTPVASRQSL_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.83544921875 2 610.83532 1219.65609 0.89065 0.00054404 -0.58001 -0.00035429 0.31064 0.00018975 610.8349023026913 42.464 0.37627 37.779 37.592 37.969 -4.6846 46 24 2 0 0 0 0.0025724 2 25597 25597;25724 79.427 49.586 1 21803000 75211 1046 50146 51241 87718;87719 87718 0.05504471080530493 VYTPVASRQSL 11 Unmodified _VYTPVASRQSL_ 0 0 0 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 ENSG00000070950|ENST00000264926|RAD18 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 610.83532 1219.65609 -0.012471 -7.6175E-06 2.3536 0.0014376 2.3411 0.00143 610.8364220482671 37.026 0.12402 37.047 36.984 37.108 0.021545 -0.030098 0.00079462 NaN 53.317 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 691150 75212 1046 50146 51241 0.05504471080530493 VYTPVDSLVF 10 Unmodified _VYTPVDSLVF_ 0 0 0 nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF nc|ENSG00000089094|Q8NHM5-5|KDM2B nc|ENSG00000089094|Q8NHM5-5|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3032836914062 2 570.30279 1138.59103 0.62375 0.00035572 0.64265 0.0003665 1.2664 0.00072223 570.3030182022632 88.518 0.30916 88.014 87.847 88.156 -0.50423 34 13 3 0 0 0 0.66652 1 48460 48460 11.64 6.8843 1 1942300 75213 1514 50147 51242 87720 87720 0.02727476554673558 VYTPVDSLVF 10 Unmodified _VYTPVDSLVF_ 0 0 0 nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000541318.1_1_12:121954314-121973995:-|nuORF nc|ENSG00000089094|Q8NHM5-5|KDM2B nc|ENSG00000089094|Q8NHM5-5|KDM2B MSMS AL20221201_MKP_PDAC_01 4 570.305908203125 2 570.30279 1138.59103 NaN NaN NaN NaN NaN NaN NaN 97.839 1 91.664 91.164 92.164 -6.1757 0 0 0 0.45397 1 64850 64850 34.102 12.565 1 75214 1514 50147 51242 87721 87721 0.02727476554673558 VYTPVLEHL 9 Unmodified _VYTPVLEHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7979125976562 2 535.797675 1069.5808 0.53576 0.00028706 -0.80318 -0.00043034 -0.26742 -0.00014328 535.7972324491104 59.718 0.2619 59.718 59.577 59.839 0 20 11 2 0 0 0 0.042911 1 33297 33297 48.346 27.892 1 3077500 75215 10766 50148 51243 87722 87722 0.04878913620086678 VYTPVLEHL 9 Unmodified _VYTPVLEHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7974853515625 2 535.797675 1069.5808 0.021293 1.1409E-05 0.19883 0.00010653 0.22012 0.00011794 535.7974219831227 60.196 0.24002 59.705 59.586 59.826 -0.49079 25 11 3 0 0 0 0.0082281 1 32760 32760 92.822 62.186 1 7275500 75216 10766 50148 51243 87723 87723 0.04878913620086678 VYTQDILQM 9 Oxidation (M) _VYTQDILQM(Oxidation (M))_ VYTQDILQM(1) VYTQDILQM(55) 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.776123046875 2 563.776082 1125.53761 0.4512 0.00025438 -1.1862 -0.00066875 -0.73499 -0.00041437 563.7758450663893 48.744 0.19715 48.372 48.322 48.519 -0.37172 13 10 2 0 0 0 0.031062 1 26224 26224 54.774 18.647 1 4020100 75217 8367 50149 51244 87724 87724 1422 -0.020136442195280324 VYTQDILQM 9 Unmodified _VYTQDILQM_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 555.7786865234375 2 555.778625 1109.5427 NaN NaN NaN NaN NaN NaN NaN 74.535 1 68.359 67.859 68.859 -6.1757 0 0 0 0.12337 1 48731 48731 39.957 14.558 1 75218 8367 50149 51245 87725 87725 -0.007693403568964641 VYTQHQPFL 9 Unmodified _VYTQHQPFL_ 0 0 0 nc|ENSG00000136631|Q9NRW7-2|VPS45;ENSG00000136631|ENST00000644510|VPS45 nc|ENSG00000136631|Q9NRW7-2|VPS45 nc|ENSG00000136631|Q9NRW7-2|VPS45 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7937622070312 2 566.792924 1131.57129 1.0212 0.0005788 0.06914 3.9188E-05 1.0903 0.00061799 566.7931845891395 49.752 0.42434 44.213 44.094 44.518 -5.5391 51 26 3 0 0 0 0.0086722 1 31085 31085 88.954 45.096 1 22845000 75219 4839 50150 51246 87726 87726 0.01077145334556917 VYTQIWRVL 9 Unmodified _VYTQIWRVL_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.3385009765625 2 589.340041 1176.66553 0.19276 0.0001136 -1.2778 -0.00075304 -1.085 -0.00063944 589.3392158076941 76.568 0.77418 76.618 76.184 76.958 0.049522 94 32 4 0 0 0 0.05447 1 42181 42181 43.858 14.777 1 60379000 75220 5353 50151 51247 87727 87727 0.0842628415668969 VYTQIWRVL 9 Unmodified _VYTQIWRVL_ 0 0 0 nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;ENST00000577161.5_1_17:78519375-78883449:+|nuORF nc|ENSG00000141564|Q8N122-3|RPTOR nc|ENSG00000141564|Q8N122-3|RPTOR MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.341552734375 2 589.340041 1176.66553 1.136 0.00066951 0.65088 0.00038359 1.7869 0.0010531 589.3404370201166 94.365 0.47978 88.189 88.03 88.509 -6.1757 42 27 2 0 0 0 0.0082353 1 62529 62529 96.111 67.029 1 10062000 75221 5353 50151 51247 87728 87728 0.0842628415668969 VYTQPRTEF 9 Unmodified _VYTQPRTEF_ 0 0 0 REV__ENSG00000112290|ENST00000392589|WASF1 REV__ENSG00000112290|ENST00000392589|WASF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7908935546875 2 570.787838 1139.56112 1.4654 0.00083644 1.5112 0.0008626 2.9767 0.001699 570.7888173876015 33.743 0.27026 29.758 29.643 29.914 -3.9853 24 14 2 0 0 0 0.070838 1 19402 19402 39.957 5.77 1 4472100 + 75222 18803 50152 51248 87729 87729 -0.0030746239067411807 VYTRHMTWI 9 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ VYTRHM(1)TWI VYTRHM(50)TWI 0 0 1 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;ENST00000455605.2_1_6:43488011-43488227:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8059692382812 2 611.805508 1221.59646 1.1587 0.00070888 -0.30299 -0.00018537 0.85569 0.00052352 611.805180465884 37.625 0.34507 33.256 33.11 33.456 -4.3689 35 20 2 0 0 0 0.040733 2 22129 22069;22129 49.527 32.414 1 17006000 75223 8100 50153 51249 87730;87731 87731 1373 -0.005471231345154592 VYTRHMTWI 9 Oxidation (M) _VYTRHM(Oxidation (M))TWI_ VYTRHM(1)TWI VYTRHM(51)TWI 0 0 1 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;ENST00000455605.2_1_6:43488011-43488227:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MSMS AL20221201_MKP_PDAC_01 4 611.8059692382812 2 611.805508 1221.59646 NaN NaN NaN NaN NaN NaN NaN 37.992 1 33.623 33.123 34.123 -4.3689 0 0 0 0.06887 1 22359 22359 51.415 32.158 1 75224 8100 50153 51249 87732 87732 1373 -0.005471231345154592 VYTRHMTWI 9 Unmodified _VYTRHMTWI_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;ENST00000455605.2_1_6:43488011-43488227:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.209228515625 3 402.874459 1205.60155 1.2167 0.00049018 0.1691 6.8126E-05 1.3858 0.0005583 402.8746003682627 47.898 0.45042 42.664 42.42 42.87 -5.2339 81 27 4 0 0 0 0.14 3 29634 29634;29658;29797 33.445 26.408 1 57706000 75225 8100 50153 51250 87733;87734;87735 87733 0.006971807281161091 VYTRHMTWI 9 Unmodified _VYTRHMTWI_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;ENST00000455605.2_1_6:43488011-43488227:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.8748779296875 3 402.874459 1205.60155 0.83599 0.0003368 1.4495 0.00058396 2.2855 0.00092076 403.2099115629802 66.145 0.6684 59.97 59.773 60.441 -6.1757 47 37 2 0 0 0 0.36964 1 43112 43112 13.615 1.3873 1 13600000 75226 8100 50153 51250 87736 87736 0.006971807281161091 VYTRHMTWI 9 Unmodified _VYTRHMTWI_ 0 0 0 nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000481352.6_1_6:43488011-43488806:+|nuORF;ENST00000455605.2_1_6:43488011-43488227:+|nuORF nc|ENSG00000171453|O15160-2|POLR1C nc|ENSG00000171453|O15160-2|POLR1C MSMS AL20221201_MKP_PDAC_01 4 402.875 3 402.874459 1205.60155 NaN NaN NaN NaN NaN NaN NaN 65.007 1 58.831 58.331 59.331 -6.1757 0 0 0 0.6557 1 42163 42163 7.1017 1.699 1 75227 8100 50153 51250 87737 87737 0.006971807281161091 VYTRTASF 8 Unmodified _VYTRTASF_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.744873046875 2 472.745442 943.476331 -0.34315 -0.00016222 0.46206 0.00021844 0.11891 5.6214E-05 472.7456180524626 28.759 0.19984 28.759 28.683 28.883 0 12 9 2 0 0 0 0.42686 1 14873 14873 41.84 18.691 1 1334000 75228 2604 50154 51251 87738 87738 0.002332118633717073 VYTRTASF 8 Unmodified _VYTRTASF_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7450866699219 2 472.745442 943.476331 NaN NaN NaN NaN NaN NaN NaN 28.715 1 28.653 28.153 29.153 -0.062159 0 0 0 0.45566 1 14830 14830 45.7 15.475 1 75229 2604 50154 51251 87739 87739 0.002332118633717073 VYTRTASF 8 Unmodified _VYTRTASF_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.7447509765625 2 472.745442 943.476331 1.051 0.00049685 -0.71142 -0.00033632 0.33957 0.00016053 472.7447464823535 32.341 0.3338 28.484 28.301 28.635 -3.8562 30 19 2 0 0 0 0.3526 1 18418 18418 49.554 19.329 1 18530000 75230 2604 50154 51251 87740 87740 0.002332118633717073 VYTRVTSF 8 Unmodified _VYTRVTSF_ 0 0 0 nc|ENSG00000160183|P57727-2|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;ENST00000476848.5_1_21:43792873-43802453:-|nuORF nc|ENSG00000160183|P57727-2|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.761474609375 2 486.761092 971.507631 0.13074 6.3641E-05 -0.6108 -0.00029731 -0.48006 -0.00023367 486.7605904301531 37.82 0.29869 37.549 37.44 37.739 -0.27133 21 14 2 0 0 0 0.27914 1 19906 19906 57.722 17.772 1 3495300 75231 6690 50155 51252 87741 87741 0.020737848974818007 VYTRVTSFL 9 Unmodified _VYTRVTSFL_ 0 0 0 nc|ENSG00000160183|P57727-2|TMPRSS3;ENST00000474596.5_1_21:43792873-43809176:-|nuORF;ENSG00000160183|ENST00000644384|TMPRSS3;nc|ENSG00000160183|P57727|TMPRSS3;nc|ENSG00000160183|P57727-6|TMPRSS3;ENST00000476848.5_1_21:43792873-43802453:-|nuORF nc|ENSG00000160183|P57727-2|TMPRSS3 nc|ENSG00000160183|P57727-2|TMPRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3023681640625 2 543.303124 1084.5917 0.661 0.00035912 -0.2902 -0.00015767 0.3708 0.00020146 543.3029579385922 58.428 0.21706 58.368 58.215 58.432 -0.060722 16 10 2 0 0 0 0.085319 1 31781 31781 36.506 7.4246 1 2164600 75232 6690 50156 51253 87742 87742 0.05278315994382865 VYTSGIYNV 9 Unmodified _VYTSGIYNV_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2584533691406 2 508.258382 1014.50221 0.47161 0.0002397 -0.25815 -0.00013121 0.21346 0.00010849 508.2583462630839 50.195 0.27505 50.195 50.075 50.35 0 28 12 3 0 0 0 0.18465 1 27696 27696 24.674 8.8267 1 5165200 75233 4799 50157 51254 87743 87743 -0.0044593868499305245 VYTSGIYNV 9 Unmodified _VYTSGIYNV_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2587280273438 2 508.258382 1014.50221 0.38864 0.00019753 0.42285 0.00021492 0.81148 0.00041244 508.25853113802185 50.746 0.32849 50.332 50.15 50.479 -0.41351 33 15 3 0 0 0 0.013472 1 27311 27311 70.716 32.564 1 4881500 75234 4799 50157 51254 87744 87744 -0.0044593868499305245 VYTSGVYHI 9 Unmodified _VYTSGVYHI_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2562866210938 2 519.766374 1037.5182 0.024966 1.2976E-05 -2.9025 -0.0015086 -2.8775 -0.0014956 519.7647598291954 42.711 0.29427 42.403 42.276 42.57 -0.30814 28 12 3 0 0 0 0.07019 1 22675 22675 44.407 17.523 1 13472000 75235 2760 50158 51255 87745 87745 0.0009376755190260155 VYTSGVYHI 9 Unmodified _VYTSGVYHI_ 0 0 0 nc|ENSG00000111077|Q63HR2-5|TNS2;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 nc|ENSG00000111077|Q63HR2-5|TNS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7664794921875 2 519.766374 1037.5182 1.2891 0.00067001 -0.41462 -0.0002155 0.87445 0.00045451 519.7661216968701 47.355 0.44062 42.274 42.099 42.54 -5.0805 67 26 3 0 0 0 0.019979 1 29359 29359 63.563 35.076 1 65618000 75236 2760 50158 51255 87746 87746 0.0009376755190260155 VYTSKSDVWAF 11 Unmodified _VYTSKSDVWAF_ 0 0 0 ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.8209228515625 2 651.821878 1301.6292 -0.38715 -0.00025235 -0.31935 -0.00020816 -0.7065 -0.00046051 651.8215560892983 61.149 0.21909 60.66 60.537 60.756 -0.48932 16 10 2 0 0 0 0.47711 1 33309 33309 27.223 20.5 1 2176400 75237 6248 50159 51256 87747 87747 -0.009546375306854316 VYTSKSDVWAF 11 Unmodified _VYTSKSDVWAF_ 0 0 0 ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3223876953125 2 651.821878 1301.6292 0.8015 0.00052243 1.0785 0.00070301 1.88 0.0012254 651.8224695698071 66.061 0.35634 59.885 59.723 60.079 -6.1757 37 20 2 0 0 0 0.014635 2 42899 42899;43034 84.522 57.299 1 24195000 75238 6248 50159 51256 87748;87749 87748 -0.009546375306854316 VYTSKSDVWAF 11 Unmodified _VYTSKSDVWAF_ 0 0 0 ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK ENSG00000153208|ENST00000295408|MERTK MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 651.821878 1301.6292 0.61006 0.00039765 -0.45772 -0.00029835 0.15234 9.9298E-05 651.8211691585876 60.743 0.17146 60.7 60.633 60.805 -0.04351 0.019878 -0.00012906 NaN 27.223 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3078600 75239 6248 50159 51256 -0.009546375306854316 VYTSKSDVWSF 11 Unmodified _VYTSKSDVWSF_ 0 0 0 ENSG00000167601|ENST00000301178|AXL;nc|ENSG00000167601|P30530-2|AXL ENSG00000167601|ENST00000301178|AXL ENSG00000167601|ENST00000301178|AXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.819091796875 2 659.819335 1317.62412 0.32564 0.00021486 -1.0167 -0.00067081 -0.69101 -0.00045594 659.8194398124161 59.126 0.27759 58.635 58.494 58.771 -0.49079 41 12 4 0 0 0 0.10451 2 32123 32123;32225 41.956 26.707 1 8274000 75240 7634 50160 51257 87750;87751 87750 -0.02198941393317 VYTSKSDVWSF 11 Unmodified _VYTSKSDVWSF_ 0 0 0 ENSG00000167601|ENST00000301178|AXL;nc|ENSG00000167601|P30530-2|AXL ENSG00000167601|ENST00000301178|AXL ENSG00000167601|ENST00000301178|AXL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.8204345703125 2 659.819335 1317.62412 0.85886 0.00056669 0.0097514 6.4342E-06 0.86861 0.00057313 659.8196006658 58.8 0.33385 58.74 58.546 58.88 -0.060719 46 16 4 0 0 0 0.017923 2 31985 31985;32091 59.368 43.219 1 6291300 75241 7634 50160 51257 87752;87753 87752 -0.02198941393317 VYTSKSDVWSF 11 Unmodified _VYTSKSDVWSF_ 0 0 0 ENSG00000167601|ENST00000301178|AXL;nc|ENSG00000167601|P30530-2|AXL ENSG00000167601|ENST00000301178|AXL ENSG00000167601|ENST00000301178|AXL MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.8219604492188 2 659.819335 1317.62412 1.1457 0.00075597 -0.22744 -0.00015007 0.91829 0.0006059 659.8194061092034 64.349 0.69349 58.173 57.88 58.574 -6.1757 93 37 4 0 0 0 7.5243E-09 3 41558 41558;41688;41822 112.04 79.255 1 72801000 75242 7634 50160 51257 87754;87755;87756 87754 -0.02198941393317 VYTSVVEEL 9 Unmodified _VYTSVVEEL_ 0 0 0 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.7716064453125 2 519.771322 1037.52809 0.31728 0.00016491 -0.43182 -0.00022445 -0.11453 -5.9532E-05 519.7710610631357 62.584 0.47012 62.584 62.4 62.87 0 73 23 4 0 0 0 0.03327 2 34959 34854;34959 53.576 30.427 1 69556000 75243 469 50161 51258 87757;87758 87758 0.010829107666040727 VYTTMAEHF 9 Oxidation (M) _VYTTM(Oxidation (M))AEHF_ VYTTM(1)AEHF VYTTM(85)AEHF 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7473754882812 2 557.747324 1113.4801 -0.13128 -7.3222E-05 0.44256 0.00024684 0.31128 0.00017361 557.7476089933808 31.927 0.60341 31.927 31.523 32.126 0 120 29 7 0 0 0 0.0090851 3 16631 16531;16631;16734 85.357 54.72 1 104820000 75244 3306 50162 51259 87759;87760;87761 87760 589 -0.07210486425083218 VYTTMAEHF 9 Oxidation (M) _VYTTM(Oxidation (M))AEHF_ VYTTM(1)AEHF VYTTM(85)AEHF 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.74755859375 2 557.747324 1113.4801 0.26281 0.00014658 0.38395 0.00021415 0.64676 0.00036073 557.7477319198845 31.763 0.41409 31.634 31.503 31.917 -0.12915 45 16 3 0 0 0 0.0090851 2 16502 16502;16606 85.357 54.72 1 12579000 75245 3306 50162 51259 87762;87763 87762 589 -0.07210486425083218 VYTTMAEHF 9 Oxidation (M) _VYTTM(Oxidation (M))AEHF_ VYTTM(1)AEHF VYTTM(48)AEHF 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7470703125 2 557.747324 1113.4801 0.052213 2.9121E-05 0.36338 0.00020268 0.4156 0.0002318 557.7475419350629 31.63 0.14836 31.66 31.564 31.712 0.030106 11 6 2 0 0 0 0.042911 1 16573 16573 48.346 31.233 1 2296800 75246 3306 50162 51259 87764 87764 589 -0.07210486425083218 VYTTMAEHF 9 Oxidation (M) _VYTTM(Oxidation (M))AEHF_ VYTTM(1)AEHF VYTTM(93)AEHF 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.7485961914062 2 557.747324 1113.4801 1.0602 0.00059131 -0.39096 -0.00021806 0.66922 0.00037325 557.7473304948459 36.071 0.62072 31.878 31.613 32.234 -4.1928 144 37 5 0 0 0 0.0082281 3 20889 20889;21021;21155 92.822 63.741 1 136020000 75247 3306 50162 51259 87765;87766;87767 87765 589 -0.07210486425083218 VYTTMAEHF 9 Oxidation (M) _VYTTM(Oxidation (M))AEHF_ VYTTM(1)AEHF VYTTM(57)AEHF 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MSMS AL20221201_MKP_PDAC_01 4 557.7453002929688 2 557.747324 1113.4801 NaN NaN NaN NaN NaN NaN NaN 36.463 1 32.27 31.77 32.77 -4.1928 0 0 0 0.050352 1 21294 21294 57.471 38.214 1 75248 3306 50162 51259 87768 87768 589 -0.07210486425083218 VYTTMAEHF 9 Unmodified _VYTTMAEHF_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7499389648438 2 549.749867 1097.48518 0.22272 0.00012244 0.6058 0.00033304 0.82852 0.00045548 549.750075469561 43.427 0.38352 43.427 43.162 43.545 0 39 18 3 0 0 0 0.012148 1 23618 23618 74.423 49.749 1 10671000 75249 3306 50162 51260 87769 87769 -0.059661825624516496 VYTTMAEHF 9 Unmodified _VYTTMAEHF_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7479858398438 2 549.749867 1097.48518 0.094336 5.1861E-05 -1.3125 -0.00072157 -1.2182 -0.00066971 549.7491827805328 43.678 0.19528 43.368 43.252 43.448 -0.31039 12 8 2 0 0 0 0.0077963 1 23259 23259 109.63 75.228 1 16490000 75250 3306 50162 51260 87770 87770 -0.059661825624516496 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ VYTTM(1)AEHFL VYTTM(100)AEHFL 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2897338867188 2 614.289356 1226.56416 0.68016 0.00041782 -0.38967 -0.00023937 0.29049 0.00017845 614.2891279106952 49.381 0.2102 49.381 49.277 49.487 0 26 9 4 0 0 0 0.0044003 1 27165 27165 100.37 60.414 1 6956500 75251 3306 50163 51261 87771 87771 589 -0.04005955328170785 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ VYTTM(1)AEHFL VYTTM(42)AEHFL 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.2899780273438 2 614.289356 1226.56416 0.91755 0.00056364 -0.27226 -0.00016725 0.64529 0.00039639 614.2894829032045 49.77 0.27243 49.378 49.218 49.49 -0.3923 39 13 4 0 0 0 0.13391 1 26727 26727 41.84 25.691 1 11843000 75252 3306 50163 51261 87772 87772 589 -0.04005955328170785 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ VYTTM(1)AEHFL VYTTM(50)AEHFL 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.288818359375 2 614.289356 1226.56416 0.94168 0.00057846 -0.52704 -0.00032376 0.41463 0.0002547 614.2890086290479 50.025 0.30164 49.632 49.471 49.772 -0.3923 33 14 3 0 0 0 0.085354 1 26899 26899 49.933 30.676 1 9386500 75253 3306 50163 51261 87773 87773 589 -0.04005955328170785 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ VYTTM(1)AEHFL VYTTM(68)AEHFL 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.79150390625 2 614.289356 1226.56416 1.0314 0.00063359 -2.5192 -0.0015475 -1.4877 -0.0009139 614.2878360850584 55.148 0.26977 49.227 49.047 49.317 -5.9211 24 16 2 0 0 0 0.02987 1 35037 35037 68.081 28.131 1 16043000 75254 3306 50163 51261 87774 87774 589 -0.04005955328170785 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ VYTTM(1)AEHFL VYTTM(44)AEHFL 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 614.2886962890625 2 614.289356 1226.56416 1.0447 0.00064176 -2.607 -0.0016014 -1.5622 -0.00095967 614.2889495318217 55.455 0.32106 49.533 49.366 49.688 -5.9211 28 19 2 0 0 0 0.11755 1 35405 35405 43.858 29.952 1 16127000 75255 3306 50163 51261 87775 87775 589 -0.04005955328170785 VYTTMAEHFL 10 Oxidation (M) _VYTTM(Oxidation (M))AEHFL_ 0 0 1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 614.289356 1226.56416 1.2202 0.00074957 -1.2905 -0.00079272 -0.070231 -4.3142E-05 614.288869383812 49.704 0.21161 49.655 49.531 49.743 -0.048824 0.04364 -0.00052463 NaN 49.933 17 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2089700 75256 3306 50163 51261 589 -0.04005955328170785 VYTTMAEHFL 10 Unmodified _VYTTMAEHFL_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.291259765625 2 606.291899 1210.56925 0.25357 0.00015374 -0.23205 -0.00014069 0.021525 1.305E-05 606.2919258143623 67.972 0.30201 61.796 61.69 61.992 -6.1757 26 17 2 0 0 0 0.04925 1 44386 44386 58.679 33.28 1 12146000 75257 3306 50163 51262 87776 87776 -0.027616514655392166 VYTTMAEHFL 10 Unmodified _VYTTMAEHFL_ 0 0 0 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 ENSG00000117472|ENST00000372003|TSPAN1 MSMS AL20221201_MKP_PDAC_01 4 606.29150390625 2 606.291899 1210.56925 NaN NaN NaN NaN NaN NaN NaN 70.026 1 63.85 63.35 64.35 -6.1757 0 0 0 0.01817 1 45741 45741 78.149 52.75 1 75258 3306 50163 51262 87777 87777 -0.027616514655392166 VYTTMTQHS 9 Unmodified _VYTTMTQHS_ 0 0 0 nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 nc|ENSG00000185567|Q8IVF2-3|AHNAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2456665039062 2 534.244949 1066.47534 -0.61496 -0.00032854 -0.31622 -0.00016894 -0.93118 -0.00049748 534.2447929466001 30.362 0.19974 30.362 30.263 30.463 0 22 9 3 0 0 0 0.1773 1 15762 15762 25.399 0 1 3723700 75259 9384 50164 51263 87778 87778 -0.05523370567834718 VYTTNIQEL 9 Unmodified _VYTTNIQEL_ 0 0 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000529915.1_1_11:58322280-58343350:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7825317382812 2 540.782222 1079.54989 0.11218 6.0666E-05 0.017105 9.2501E-06 0.12929 6.9916E-05 540.781852636389 52.454 0.2651 52.454 52.287 52.552 0 30 11 3 0 0 0 0.031062 1 29010 29010 54.774 10.915 1 9764700 75260 2691 50165 51264 87779 87779 0.013297155151803963 VYTTNIQEL 9 Unmodified _VYTTNIQEL_ 0 0 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000529915.1_1_11:58322280-58343350:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 540.782222 1079.54989 0.16524 8.9356E-05 0.60586 0.00032764 0.7711 0.000417 540.7818192092732 52.979 0.25003 52.527 52.381 52.631 -0.45173 0.036331 0.00048596 NaN 54.774 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1090600 75261 2691 50165 51264 0.013297155151803963 VYTTNTILL 9 Unmodified _VYTTNTILL_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2979736328125 2 519.297507 1036.58046 0.10523 5.4644E-05 0.94163 0.00048898 1.0469 0.00054363 519.2978901646151 70.598 0.349 70.598 70.377 70.726 0 35 15 3 0 0 0 0.06187 1 39300 39300 42.095 16.695 1 2261200 75262 4635 50166 51265 87780 87780 0.06363493900244066 VYTTNTILL 9 Unmodified _VYTTNTILL_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2980346679688 2 519.297507 1036.58046 0.36134 0.00018764 0.44301 0.00023005 0.80435 0.0004177 519.297630075127 70.987 0.56573 70.51 70.225 70.791 -0.47736 62 22 4 0 0 0 0.06187 2 38888 38787;38888 42.095 16.695 1 33886000 75263 4635 50166 51265 87781;87782 87782 0.06363493900244066 VYTTNTILL 9 Unmodified _VYTTNTILL_ 0 0 0 ENSG00000134755|ENST00000280904|DSC2;nc|ENSG00000134755|Q02487-2|DSC2 ENSG00000134755|ENST00000280904|DSC2 ENSG00000134755|ENST00000280904|DSC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2967529296875 2 519.297507 1036.58046 0.63559 0.00033006 0.16327 8.4785E-05 0.79886 0.00041485 519.2973716409329 77.457 0.87863 71.281 70.841 71.72 -6.1757 129 50 3 0 0 0 0.012148 5 50421 50421;50539;50657;50775;50899 74.423 35.007 1 72597000 75264 4635 50166 51265 87783;87784;87785;87786;87787 87783 0.06363493900244066 VYTTQPGVQF 10 Unmodified _VYTTQPGVQF_ 0 0 0 ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM ENSG00000143891|ENST00000272252|GALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.2908935546875 2 570.290214 1138.56587 0.71213 0.00040612 0.041365 2.359E-05 0.7535 0.00042971 570.791167888548 52.397 0.19422 51.964 51.809 52.003 -0.43367 15 9 2 0 0 0 0.52888 2 28319 28306;28319 14.838 4.0143 1 1993800 75265 5565 50167 51266 87788;87789 87789 0.0021342175209611014 VYTTTRSHL 9 Unmodified _VYTTTRSHL_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.8610229492188 3 359.861096 1076.56146 NaN NaN NaN NaN NaN NaN NaN 18.821 1 18.821 18.321 19.321 0 0 0 0 0.70001 1 9382 9382 13.615 5.7047 1 75266 713 50168 51267 87790 87790 0.02623957329183213 VYTTTRSHL 9 Unmodified _VYTTTRSHL_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.1949768066406 3 359.861096 1076.56146 -0.57948 -0.00020853 1.2822 0.0004614 0.70267 0.00025286 360.1959085265523 18.732 0.16212 18.755 18.668 18.83 0.023106 49 25 3 0 0 0 0.1685 2 9421 9393;9421 24.882 12.009 1 2679800 75267 713 50168 51267 87791;87792 87792 0.02623957329183213 VYTTTRSHL 9 Unmodified _VYTTTRSHL_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.289794921875 2 539.288005 1076.56146 1.0179 0.00054892 1.6957 0.00091448 2.7136 0.0014634 539.2890494655525 20.475 0.27508 17.782 17.646 17.921 -2.693 29 13 3 0 0 0 0.06294 1 10877 10877 41.84 3.8656 1 2752400 75268 713 50168 51267 87793 87793 0.02623957329183213 VYTTTVHW 8 Unmodified _VYTTTVHW_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7532043457031 2 503.753267 1005.49198 -0.014065 -7.0855E-06 -1.4156 -0.0007131 -1.4296 -0.00072019 503.75325758021097 46.248 0.25281 45.911 45.8 46.053 -0.33664 21 12 2 0 0 0 0.21786 1 24740 24740 67.035 28.884 1 7917300 75269 8403 50169 51268 87794 87794 -0.010545016195806056 VYTTTVHW 8 Unmodified _VYTTTVHW_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MSMS AL20221201_MKP_PDAC_01 4 503.7514953613281 2 503.753267 1005.49198 NaN NaN NaN NaN NaN NaN NaN 51.229 1 45.58 45.08 46.08 -5.649 0 0 0 0.25871 1 32225 32225 70.865 40.64 1 75270 8403 50169 51268 87795 87795 -0.010545016195806056 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.2955322265625 2 560.295299 1118.57605 -0.03529 -1.9773E-05 1.0558 0.00059156 1.0205 0.00057178 560.2958424836752 61.385 0.5152 60.895 60.516 61.031 -0.48932 56 24 3 0 0 0 0.023164 2 33445 33349;33445 60.39 35.716 1 9388300 75271 8403 50170 51269 87796;87797 87797 0.021500294773204587 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.2945556640625 2 560.295299 1118.57605 0.70968 0.00039763 0.2578 0.00014444 0.96748 0.00054207 560.2953716990678 60.972 0.33789 60.928 60.726 61.064 -0.04351 57 16 4 0 0 0 0.013472 2 33203 33203;33303 70.716 46.695 1 39488000 75272 8403 50170 51269 87798;87799 87798 0.021500294773204587 VYTTTVHWL 9 Unmodified _VYTTTVHWL_ 0 0 0 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.298095703125 2 560.295299 1118.57605 0.95959 0.00053765 0.46229 0.00025902 1.4219 0.00079667 560.2960275647416 66.11 0.90782 59.934 59.692 60.599 -6.1757 68 51 2 0 0 0 0.052168 1 42936 42936 44.407 32.767 1 142970000 75273 8403 50170 51269 87800 87800 0.021500294773204587 VYTVHHVVW 9 Unmodified _VYTVHHVVW_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5385131835938 3 380.538064 1138.59236 0.18049 6.8682E-05 0.031097 1.1834E-05 0.21158 8.0516E-05 380.53805125735096 41.125 0.21083 40.822 40.718 40.929 -0.30304 19 9 3 0 0 0 0.15471 1 21792 21792 27.629 12.791 1 3096400 75274 1692 50171 51270 87801 87801 0.028611554340841394 VYTVHHVVW 9 Unmodified _VYTVHHVVW_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3043823242188 2 570.303458 1138.59236 0.37624 0.00021457 -0.6614 -0.0003772 -0.28516 -0.00016263 570.3040761593064 40.829 0.20088 40.828 40.711 40.912 -0.0017929 16 9 3 0 0 0 0.013041 1 21793 21793 70.716 40.491 1 1919200 75275 1692 50171 51270 87802 87802 0.028611554340841394 VYTVHHVVW 9 Unmodified _VYTVHHVVW_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5376586914062 3 380.538064 1138.59236 0.90763 0.00034539 -0.3516 -0.0001338 0.55603 0.00021159 380.53790305235793 45.137 0.39864 40.285 40.036 40.435 -4.852 49 26 2 0 0 0 0.15471 2 27569 27569;27710 27.629 18.883 1 61354000 75276 1692 50171 51270 87803;87804 87803 0.028611554340841394 VYTVHHVVW 9 Unmodified _VYTVHHVVW_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3 ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3038330078125 2 570.303458 1138.59236 0.56405 0.00032168 -0.75826 -0.00043244 -0.19421 -0.00011076 570.3029255658555 45.163 0.316 40.311 40.098 40.414 -4.852 47 20 3 0 0 0 0.0082353 1 27638 27638 123.1 59.533 1 17082000 75277 1692 50171 51270 87805 87805 0.028611554340841394 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(71)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.757568359375 2 559.757358 1117.50016 0.62854 0.00035183 -1.0213 -0.00057168 -0.39276 -0.00021985 559.7568763424246 59.692 0.50178 59.692 59.4 59.902 0 92 22 5 0 0 0 0.013472 3 33161 33161;33265;33378 70.716 31.3 1 141220000 75278 664 50172 51271 87806;87807;87808 87806 100 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(60)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.757568359375 2 559.757358 1117.50016 0.19353 0.00010833 4.1861 0.0023432 4.3797 0.0024515 559.7571101412701 60.441 0.45709 59.95 59.63 60.087 -0.49079 63 22 4 0 0 0 0.023164 1 32787 32787 60.39 9.5345 1 16287000 75279 664 50172 51271 87809 87809 100 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(54)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7581176757812 2 559.757358 1117.50016 0.67611 0.00037845 -0.062888 -3.5202E-05 0.61322 0.00034325 559.7573688571453 59.956 0.34163 59.903 59.694 60.036 -0.053062 37 16 3 0 0 0 0.03327 1 32643 32643 53.576 23.351 1 5094300 75280 664 50172 51271 87810 87810 100 -0.053887354851212876 VYTVVDEMF 9 Oxidation (M) _VYTVVDEM(Oxidation (M))F_ VYTVVDEM(1)F VYTVVDEM(71)F 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7576293945312 2 559.757358 1117.50016 0.79151 0.00044306 0.024276 1.3589E-05 0.81579 0.00045664 559.7575001841041 67.742 0.70435 61.567 61.236 61.94 -6.1757 127 40 4 0 0 0 0.013472 2 44124 44124;44268 70.716 32.564 1 208990000 75281 664 50172 51271 87811;87812 87811 100 -0.053887354851212876 VYTVVDEMF 9 Unmodified _VYTVVDEMF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.76025390625 2 551.759901 1101.50525 0.41208 0.00022737 -0.69242 -0.00038205 -0.28034 -0.00015468 551.7599516216559 79.716 0.51653 79.716 79.394 79.911 0 64 21 4 0 0 0 0.10925 3 44303 44188;44201;44303 32.117 8.9685 1 4582800 75282 664 50172 51272 87813;87814;87815 87815 -0.04144431622512457 VYTVVDEMF 9 Unmodified _VYTVVDEMF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7593383789062 2 551.759901 1101.50525 1.019 0.00056224 -2.297 -0.0012674 -1.278 -0.00070515 551.7598895884651 80.232 0.99846 79.743 79.296 80.295 -0.48932 112 40 5 0 0 0 0.078417 1 43896 43896 38.151 15.003 1 4633400 75283 664 50172 51272 87816 87816 -0.04144431622512457 VYTVVDEMF 9 Unmodified _VYTVVDEMF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7603149414062 2 551.759901 1101.50525 1.2816 0.00070713 -0.72973 -0.00040264 0.55185 0.00030449 551.7595618631811 87.989 0.67308 81.813 81.495 82.168 -6.1757 119 37 4 0 0 0 0.013472 3 57872 57872;57997;58117 70.716 26.309 1 223080000 75284 664 50172 51272 87817;87818;87819 87817 -0.04144431622512457 VYTVVDEMF 9 Unmodified _VYTVVDEMF_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MSMS AL20221201_MKP_PDAC_01 4 551.7586669921875 2 551.759901 1101.50525 NaN NaN NaN NaN NaN NaN NaN 88.31 1 82.134 81.634 82.634 -6.1757 0 0 0 0.20498 1 58256 58256 30.225 12.09 1 75285 664 50172 51272 87820 87820 -0.04144431622512457 VYTVVDEMFL 10 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ VYTVVDEM(1)FL VYTVVDEM(120)FL 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1231.590454101562 1 1231.5915 1230.58423 -0.42704 -0.00052594 -0.052797 -6.5024E-05 -0.47984 -0.00059097 1231.5919449496664 77.449 0.42303 77.449 77.138 77.561 0 73 30 3 0 0 0 0.00060102 1 43110 43110 115.69 77.718 1 5622400 75286 664 50173 51273 87821 87821 100 -0.021842043882088547 VYTVVDEMFL 10 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ VYTVVDEM(1)FL VYTVVDEM(67)FL 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2984008789062 2 616.29939 1230.58423 -0.69579 -0.00042881 -0.36779 -0.00022667 -1.0636 -0.00065548 616.2992158584224 77.931 0.77839 77.449 77.066 77.844 -0.4826 172 48 4 0 0 0 0.031389 3 42704 42499;42599;42704 67.344 30.588 1 95171000 75287 664 50173 51273 87822;87823;87824 87824 100 -0.021842043882088547 VYTVVDEMFL 10 Oxidation (M) _VYTVVDEM(Oxidation (M))FL_ VYTVVDEM(1)FL VYTVVDEM(67)FL 0 0 1 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2998657226562 2 616.29939 1230.58423 0.36825 0.00022695 -0.0067302 -4.1478E-06 0.36152 0.00022281 616.2994188862876 77.391 0.69081 77.441 76.985 77.675 0.050102 87 28 4 0 0 0 0.031389 3 42588 42588;42695;42802 67.344 27.387 1 30224000 75288 664 50173 51273 87825;87826;87827 87825 100 -0.021842043882088547 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.3020629882812 2 608.301933 1214.58931 0.013471 8.1942E-06 0.23037 0.00014013 0.24384 0.00014833 608.3020719152823 95.16 0.43575 95.16 94.961 95.397 0 83 27 4 0 0 0 0.20195 2 52649 52548;52649 48.346 26.599 1 4548200 75289 664 50173 51274 87828;87829 87829 -0.009399005256000237 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1215.59716796875 1 1215.59659 1214.58931 -0.42362 -0.00051495 1.0577 0.0012858 0.63411 0.00077083 1215.5987035016035 95.188 0.23438 95.188 95.087 95.321 0 20 14 2 0 0 0 0.22237 1 52638 52638 46.021 27.875 1 623520 75290 664 50173 51274 87830 87830 -0.009399005256000237 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3038330078125 2 608.301933 1214.58931 0.3991 0.00024277 -0.18454 -0.00011225 0.21457 0.00013052 608.3018907784096 95.646 0.53749 95.278 95.038 95.575 -0.36815 109 30 5 0 0 0 0.38225 2 52146 52146;52345 34.102 12.356 1 18638000 75291 664 50173 51274 87831;87832 87831 -0.009399005256000237 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3031616210938 2 608.301933 1214.58931 2.2159 0.0013479 -0.16499 -0.00010036 2.0509 0.0012476 608.3018518945638 95.188 0.43201 95.192 94.972 95.404 0.0041504 47 15 4 0 0 0 0.047829 1 52867 52867 81.613 33.267 1 9500100 75292 664 50173 51274 87833 87833 -0.009399005256000237 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3027954101562 2 608.301933 1214.58931 0.93593 0.00056933 -0.79232 -0.00048197 0.14361 8.7357E-05 608.3014796921389 100.37 0.24183 94.195 94.088 94.33 -6.1757 63 14 6 0 0 0 0.06987 1 67058 67058 74.423 34.465 1 2209100000 75293 664 50173 51274 87834 87834 -0.009399005256000237 VYTVVDEMFL 10 Unmodified _VYTVVDEMFL_ 0 0 0 ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 ENSG00000042753|ENST00000263270|AP2S1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1215.59659 1214.58931 0.23457 0.00028515 0.080282 9.759E-05 0.31485 0.00038274 1215.5968616697537 95.638 0.3807 95.269 95.076 95.456 -0.36814 0.040616 -0.00015086 NaN 46.021 57 21 4 NaN NaN NaN NaN 0 NaN NaN 0 3967300 75294 664 50173 51274 -0.009399005256000237 VYTVVLQGLA 10 Unmodified _VYTVVLQGLA_ 0 0 0 REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF REV__ENST00000409074.6_2_14:104056781-104056841:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8143310546875 2 531.813325 1061.6121 0.17879 9.5082E-05 1.8294 0.0009729 2.0082 0.001068 531.8148267342518 76.216 0.3586 76.264 76.109 76.467 0.047943 21 14 2 0 0 0 0.33553 1 42132 42132 25.399 4.9457 1 2431900 + 75295 26677 50174 51275 87835 87835 0.08375486654176711 VYTYDIMID 9 Unmodified _VYTYDIMID_ 0 0 0 REV__nc|ENSG00000160285|P48449-3|LSS REV__nc|ENSG00000160285|P48449-3|LSS MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7665405273438 2 566.765183 1131.51581 1.1276 0.00063911 0.75183 0.00042611 1.8795 0.0010652 566.7657311510948 80.037 0.47221 73.862 73.612 74.085 -6.1757 38 28 2 0 0 0 0.2143 1 52602 52602 21.747 2.3076 1 36715000 + 75296 21530 50175 51276 87836 87836 -0.044684489680776096 VYTYIQSRF 9 Unmodified _VYTYIQSRF_ 0 0 0 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000127334|Q92630-2|DYRK2;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4;ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4 ENSG00000127334|ENST00000344096|DYRK2;nc|ENSG00000010219|Q9NR20-5|DYRK4 ENSG00000127334|ENST00000344096|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8048706054688 2 588.806031 1175.59751 1.5182 0.00089391 -0.0027767 -1.6349E-06 1.5154 0.00089227 588.8059383749678 50.23 0.26404 50.181 50.046 50.31 -0.048828 41 12 4 0 0 0 0.0090524 2 27120 27120;27221 85.642 49.514 1 12809000 75297 3999;414 50176 51277 87837;87838 87837 0.016734145060127048 VYVAALKTL 9 Unmodified _VYVAALKTL_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.3053588867188 2 489.305136 976.595718 -0.39435 -0.00019296 -0.24849 -0.00012159 -0.64284 -0.00031455 489.30510895202156 56.568 0.13616 56.082 56.05 56.186 -0.48554 11 9 2 0 0 0 0.025842 1 30737 30737 57.722 17.765 1 5416400 75298 1642 50177 51278 87839 87839 0.10648405488097978 VYVAALKTL 9 Unmodified _VYVAALKTL_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.3045959472656 2 489.305136 976.595718 -0.0087728 -4.2926E-06 0.18077 8.8451E-05 0.172 8.4159E-05 489.30545053982746 56.238 0.26804 56.17 56.036 56.304 -0.068741 27 13 3 0 0 0 0.0090524 1 30627 30627 85.642 43.547 1 11440000 75299 1642 50177 51278 87840 87840 0.10648405488097978 VYVAALKTL 9 Unmodified _VYVAALKTL_ 0 0 0 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 ENSG00000095015|ENST00000399503|MAP3K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.3071899414062 2 489.305136 976.595718 0.51211 0.00025058 1.6942 0.00082899 2.2063 0.0010796 489.3061798321937 61.982 0.36951 55.806 55.597 55.966 -6.1757 36 20 2 0 0 0 0.025842 1 39927 39927 57.722 17.765 1 34404000 75300 1642 50177 51278 87841 87841 0.10648405488097978 VYVAIQAVL 9 Unmodified _VYVAIQAVL_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 488.2977600097656 2 488.29731 974.580068 1.0952 0.00053479 0.072002 3.5159E-05 1.1672 0.00056995 488.2973119182339 91.81 0.99265 85.634 85.076 86.069 -6.1757 173 56 4 0 0 0 0.040472 5 60379 60379;60501;60623;60752;60883 49.669 9.2203 1 101770000 75301 5009 50178 51279 87842;87843;87844;87845;87846 87842 0.0917611897103825 VYVAIQAVL 9 Unmodified _VYVAIQAVL_ 0 0 0 ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 ENSG00000138071|ENST00000260641|ACTR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 975.5877075195312 1 975.587344 974.580068 0.84678 0.00082611 -0.40385 -0.00039399 0.44293 0.00043212 975.5868630536764 91.763 0.68677 85.587 85.219 85.906 -6.1757 68 38 2 0 0 0 0.03327 4 60738 60500;60618;60738;60869 53.576 14.804 1 17859000 75302 5009 50178 51279 87847;87848;87849;87850 87849 0.0917611897103825 VYVATRPTI 9 Unmodified _VYVATRPTI_ 0 0 0 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.301513671875 2 510.297842 1018.58113 -0.17502 -8.931E-05 4.4391 0.0022653 4.2641 0.002176 510.30087346390496 39.776 0.40565 39.478 39.285 39.69 -0.29716 46 19 3 0 0 0 0.11784 1 21013 21013 31.268 8.5321 1 7177400 75303 7419 50179 51280 87851 87851 0.07258333339962064 VYVATRPTI 9 Unmodified _VYVATRPTI_ 0 0 0 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.2995910644531 2 510.297842 1018.58113 0.55193 0.00028165 1.2485 0.0006371 1.8004 0.00091874 510.2990998042974 39.448 0.33194 39.459 39.281 39.613 0.011452 18 15 2 0 0 0 0.21643 1 21016 21016 21.537 4.4241 1 2235300 75304 7419 50179 51280 87852 87852 0.07258333339962064 VYVATRPTI 9 Unmodified _VYVATRPTI_ 0 0 0 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 ENSG00000166002|ENST00000298966|SMCO4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.299560546875 2 510.297842 1018.58113 0.36913 0.00018836 1.3389 0.00068325 1.708 0.00087161 510.29856671846295 44.881 0.3378 40.029 39.851 40.188 -4.852 42 22 2 0 0 0 0.062454 2 27376 27376;27519 41.956 12.874 1 33015000 75305 7419 50179 51280 87853;87854 87853 0.07258333339962064 VYVDAVGQF 9 Unmodified _VYVDAVGQF_ 0 0 0 ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.2534790039062 2 499.2531 996.491647 -0.18795 -9.3835E-05 -0.82475 -0.00041176 -1.0127 -0.00050559 499.25270887578444 60.483 0.24199 59.993 59.887 60.129 -0.48932 18 11 2 0 0 0 0.052168 1 32944 32944 44.407 26.272 1 5166600 75306 3204 50180 51281 87855 87855 -0.006739213394212129 VYVDAVGQF 9 Unmodified _VYVDAVGQF_ 0 0 0 ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MSMS AL20221201_MKP_PDAC_01 4 499.2532958984375 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 67.773 1 61.597 61.097 62.097 -6.1757 0 0 0 0.096036 1 44173 44173 44.407 27.465 1 75307 3204 50180 51281 87856 87856 -0.006739213394212129 VYVDAVGQF 9 Unmodified _VYVDAVGQF_ 0 0 0 ENSG00000116198|ENST00000378230|CEP104;nc|ENSG00000116198|O60308-2|CEP104;nc|ENSG00000116198|O60308-3|CEP104;ENST00000494653.5_1_1:3750422-3768971:-|nuORF ENSG00000116198|ENST00000378230|CEP104 ENSG00000116198|ENST00000378230|CEP104 MSMS AL20221201_MKP_PDAC_01 4 499.25341796875 2 499.2531 996.491647 NaN NaN NaN NaN NaN NaN NaN 67.957 1 61.781 61.281 62.281 -6.1757 0 0 0 0.15618 1 44319 44319 36.044 17.909 1 75308 3204 50180 51281 87857 87857 -0.006739213394212129 VYVDDIYVI 9 Unmodified _VYVDDIYVI_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7898559570312 2 549.789515 1097.56448 0.35322 0.0001942 0.47642 0.00026193 0.82963 0.00045612 549.7898416015464 82.498 0.38049 82.498 82.293 82.673 0 36 15 3 0 0 0 0.078417 2 45742 45742;45836 38.151 25.62 1 2038000 75309 4971 50181 51282 87858;87859 87858 0.01959787663327006 VYVDDIYVI 9 Unmodified _VYVDDIYVI_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7891845703125 2 549.789515 1097.56448 0.53355 0.00029334 -0.24036 -0.00013215 0.29319 0.00016119 549.7892904037537 83.054 0.31128 82.556 82.331 82.642 -0.49751 23 12 3 0 0 0 0.28047 1 45427 45427 18.135 9.5417 1 942560 75310 4971 50181 51282 87860 87860 0.01959787663327006 VYVDDIYVI 9 Unmodified _VYVDDIYVI_ 0 0 0 ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1;nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF ENSG00000137812|ENST00000399668|KNL1 ENSG00000137812|ENST00000399668|KNL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7904663085938 2 549.789515 1097.56448 1.1473 0.00063076 1.4461 0.00079506 2.5934 0.0014258 549.7902694970942 90.564 0.54943 84.388 84.11 84.659 -6.1757 62 32 3 0 0 0 0.045537 1 59866 59866 46.921 29.979 1 13334000 75311 4971 50181 51282 87861 87861 0.01959787663327006 VYVDFEGINF 10 Unmodified _VYVDFEGINF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2916259765625 2 601.790047 1201.56554 0.42738 0.00025719 -1.0264 -0.0006177 -0.59905 -0.0003605 601.7893967546687 92.496 0.28979 92.015 91.836 92.126 -0.48092 32 13 3 0 0 0 0.5905 1 50516 50516 11.64 3.047 1 1839800 75312 10887 50182 51283 87862 87862 -0.02717997967761221 VYVDFEGINF 10 Unmodified _VYVDFEGINF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.7916259765625 2 601.790047 1201.56554 1.1525 0.00069356 -0.28955 -0.00017425 0.86295 0.00051931 601.7893941086103 92.008 0.27694 92.038 91.858 92.135 0.03019 20 9 3 0 0 0 0.18021 1 51163 51163 36.127 19.978 1 3719100 75313 10887 50182 51283 87863 87863 -0.02717997967761221 VYVDFEGINF 10 Unmodified _VYVDFEGINF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.789794921875 2 601.790047 1201.56554 0.39597 0.00023829 -0.073392 -4.4166E-05 0.32258 0.00019413 601.789732747205 99.445 0.19518 93.269 93.159 93.354 -6.1757 26 12 3 0 0 0 0.2178 1 66218 66218 32.305 16.458 1 185570000 75314 10887 50182 51283 87864 87864 -0.02717997967761221 VYVDFEGINF 10 Unmodified _VYVDFEGINF_ 0 0 0 ENSG00000272333|ENST00000420124|KMT2B;KMT2B|p.P2088Qfs*3|1|0.16|ENSG00000272333|chr19:35732811-35732811|C/-|frameshift_variant ENSG00000272333|ENST00000420124|KMT2B ENSG00000272333|ENST00000420124|KMT2B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 601.790047 1201.56554 -0.068191 -4.1037E-05 1.0167 0.00061183 0.94849 0.00057079 601.7906261299303 91.917 0.17067 91.917 91.798 91.969 0 -0.073277 0.0016938 NaN 36.127 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 346040 75315 10887 50182 51283 -0.02717997967761221 VYVDKLAEL 9 Unmodified _VYVDKLAEL_ 0 0 0 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 ENSG00000170606|ENST00000304858|HSPA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7986450195312 2 525.297507 1048.58046 1.1807 0.00062023 -1.2179 -0.00063973 -0.037138 -1.9508E-05 525.2965108856038 61.685 0.28602 55.509 55.351 55.637 -6.1757 24 14 2 0 0 0 0.06294 1 39770 39770 41.84 9.0539 1 18019000 75316 8008 50183 51284 87865 87865 0.05811493900228015 VYVDKVEKM 9 Oxidation (M) _VYVDKVEKM(Oxidation (M))_ VYVDKVEKM(1) VYVDKVEKM(43) 0 0 1 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2002563476562 3 376.198609 1125.574 1.6578 0.00062366 0.8675 0.00032635 2.5253 0.00095001 376.1991804902768 20.449 0.43742 17.756 17.582 18.019 -2.693 70 25 4 0 0 0 0.058763 1 10844 10844 42.835 32.685 1 17926000 75317 3923 50184 51285 87866 87866 703 0.016232326772069428 VYVDKVEKM 9 Oxidation (M) _VYVDKVEKM(Oxidation (M))_ VYVDKVEKM(1) VYVDKVEKM(46) 0 0 1 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7960815429688 2 563.794275 1125.574 1.3281 0.00074879 1.8876 0.0010642 3.2157 0.001813 563.7955127414754 20.472 0.25558 17.779 17.646 17.901 -2.693 21 12 2 0 0 0 0.047714 1 10866 10866 45.74 23.993 1 1945900 75318 3923 50184 51285 87867 87867 703 0.016232326772069428 VYVDKVEKM 9 Unmodified _VYVDKVEKM_ 0 0 0 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 370.8676452636719 3 370.86697 1109.57908 1.4916 0.00055318 0.4495 0.0001667 1.9411 0.00071989 370.8670398169202 31.064 0.30031 27.43 27.206 27.506 -3.6336 19 13 2 0 0 0 0.011671 1 17508 17508 61.09 43.227 1 67338000 75319 3923 50184 51286 87868 87868 0.028675365398157737 VYVDLGGSHVF 11 Unmodified _VYVDLGGSHVF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.8023681640625 2 596.803488 1191.59242 -0.022534 -1.3449E-05 -0.63918 -0.00038147 -0.66171 -0.00039491 596.8031838216223 62.434 0.29853 62.434 62.29 62.589 0 50 20 3 0 0 0 0.016495 1 34803 34803 75.761 51.74 1 11020000 75320 7384 50185 51287 87869 87869 0.004291106434266112 VYVDLGGSHVF 11 Unmodified _VYVDLGGSHVF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.8033447265625 2 596.803488 1191.59242 0.54908 0.00032769 -0.9503 -0.00056714 -0.40122 -0.00023945 596.8029074345253 62.918 0.50187 62.431 62.227 62.729 -0.48617 80 24 5 0 0 0 0.016495 3 34246 34246;34254;34352 85.642 61.621 1 142230000 75321 7384 50185 51287 87870;87871;87872 87870 0.004291106434266112 VYVDLGGSHVF 11 Unmodified _VYVDLGGSHVF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.8024291992188 2 596.803488 1191.59242 0.16105 9.6112E-05 -0.78927 -0.00047104 -0.62822 -0.00037492 596.802880653539 62.512 0.31895 62.491 62.342 62.66 -0.021614 39 16 3 0 0 0 0.10976 1 34138 34138 60.074 36.053 1 22690000 75322 7384 50185 51287 87873 87873 0.004291106434266112 VYVDLGGSHVF 11 Unmodified _VYVDLGGSHVF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8049926757812 2 596.803488 1191.59242 0.48123 0.0002872 0.30364 0.00018121 0.78487 0.00046841 596.8038697634456 68.747 1.0246 62.571 62.257 63.281 -6.1757 166 57 4 0 0 0 0.0039716 5 44743 44743;44872;44995;45115;45251 96.111 65.474 1 177660000 75323 7384 50185 51287 87874;87875;87876;87877;87878 87874 0.004291106434266112 VYVDLGGSHVF 11 Unmodified _VYVDLGGSHVF_ 0 0 0 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 ENSG00000165733|ENST00000374518|BMS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.8035888671875 2 596.803488 1191.59242 0.35524 0.00021201 -0.0018253 -1.0894E-06 0.35341 0.00021092 596.8035528154587 70.108 1.008 63.933 63.304 64.312 -6.1757 162 56 4 0 0 0 0.0039716 5 45490 45490;45603;45723;45852;45977 107.19 96.111 1 194000000 75324 7384 50185 51287 87879;87880;87881;87882;87883 87879 0.004291106434266112 VYVDLIHSY 9 Unmodified _VYVDLIHSY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7887573242188 2 554.787307 1107.56006 0.63999 0.00035506 0.033868 1.8789E-05 0.67386 0.00037385 554.7873130432408 59.382 0.29293 59.382 59.217 59.51 0 31 12 3 0 0 0 0.012148 1 33050 33050 74.423 47.539 1 11423000 75325 2781 50186 51288 87884 87884 0.010583232404542287 VYVDLIHSY 9 Unmodified _VYVDLIHSY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.78857421875 2 554.787307 1107.56006 0.41604 0.00023081 -0.38882 -0.00021571 0.027218 1.51E-05 554.7869936606703 59.972 0.43728 59.481 59.193 59.63 -0.49079 61 21 4 0 0 0 0.0090851 3 32573 32573;32590;32676 85.357 51.254 1 57252000 75326 2781 50186 51288 87885;87886;87887 87885 0.010583232404542287 VYVDLIHSY 9 Unmodified _VYVDLIHSY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7859497070312 2 554.787307 1107.56006 0.43883 0.00024346 0.42101 0.00023357 0.85984 0.00047703 554.7876669542696 59.609 0.25591 59.556 59.399 59.655 -0.053062 23 12 2 0 0 0 0.095405 1 32441 32441 34.102 18.255 1 6846000 75327 2781 50186 51288 87888 87888 0.010583232404542287 VYVDLIHSY 9 Unmodified _VYVDLIHSY_ 0 0 0 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 ENSG00000111331|ENST00000228928|OAS3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7869262695312 2 554.787307 1107.56006 0.74474 0.00041317 0.10596 5.8784E-05 0.8507 0.00047196 554.7873365424434 65.924 0.99527 59.749 59.478 60.473 -6.1757 102 57 2 0 0 0 0.0048787 4 42814 42683;42814;42955;43126 117.6 69.253 1 149010000 75328 2781 50186 51288 87889;87890;87891;87892 87890 0.010583232404542287 VYVDMHEGPKS 11 Unmodified _VYVDMHEGPKS_ 0 0 0 REV__ENSG00000196116|ENST00000355295|TDRD7 REV__ENSG00000196116|ENST00000355295|TDRD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.29541015625 2 631.297713 1260.58087 NaN NaN NaN NaN NaN NaN NaN 42.107 1 42.107 41.607 42.607 0 0 0 0 0.24717 1 22774 22774 36.506 5.8697 1 + 75329 23789 50187 51289 87893 87893 -0.03899454442239403 VYVDQIGQ 8 Unmodified _VYVDQIGQ_ 0 0 0 REV__ENSG00000013364|ENST00000357402|MVP REV__ENSG00000013364|ENST00000357402|MVP MSMS AL20221201_MKP_PDAC_01 4 460.9028930664062 2 461.23745 920.460347 NaN NaN NaN NaN NaN NaN NaN 25.317 1 22.434 21.934 22.934 -2.8831 0 0 0 0.96305 1 13853 13853 7.9102 0.62092 1 + 75330 17073 50188 51290 87894 87894 -0.0030649437351257802 VYVEKISFL 9 Unmodified _VYVEKISFL_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3140869140625 2 549.3157 1096.61685 0.08217 4.5137E-05 0.45097 0.00024773 0.53314 0.00029286 549.3159046625987 70.242 0.3189 69.763 69.615 69.934 -0.47903 29 15 2 0 0 0 0.044011 1 38361 38361 47.749 1.7277 1 16043000 75331 8055 50189 51291 87895 87895 0.07240370796944262 VYVEKISFL 9 Unmodified _VYVEKISFL_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MULTI-SECPEP AL20221201_MKP_PDAC_01 4 549.7606811523438 2 549.3157 1096.61685 0.92881 0.00051021 -0.78861 -0.0004332 0.1402 7.7013E-05 549.3150003033358 81.417 1.383 75.241 74.66 76.044 -6.1757 114 78 2 0 0 0 0.18094 1 53055 53055 20.415 6.5085 1 32053000 75332 8055 50189 51291 87896 87896 0.07240370796944262 VYVEKISFL 9 Unmodified _VYVEKISFL_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 549.3157 1096.61685 0.34583 0.00018997 0.20152 0.0001107 0.54735 0.00030067 549.3156841894233 69.606 0.33185 69.637 69.514 69.846 0.030914 -0.11345 -6.5193E-05 NaN 47.749 28 16 2 NaN NaN NaN NaN 0 NaN NaN 0 20385000 75333 8055 50189 51291 0.07240370796944262 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.3005981445312 2 539.300581 1076.58661 0.66104 0.0003565 -0.81585 -0.00043999 -0.15481 -8.3489E-05 539.3000032158973 42.999 0.52485 42.999 42.816 43.341 0 86 26 6 0 0 0 0.044296 2 23383 23275;23383 47.594 14.809 1 732780000 75334 1524 50190 51292 87897;87898 87898 0.05138012131760661 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2998046875 2 539.300581 1076.58661 0.045784 2.4691E-05 -0.16096 -8.6805E-05 -0.11518 -6.2114E-05 539.3001973287245 43.238 0.16819 42.928 42.82 42.989 -0.31039 17 7 3 0 0 0 0.01958 1 22972 22972 63.961 16.212 1 9900900 75335 1524 50190 51292 87899 87899 0.05138012131760661 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3014526367188 2 539.300581 1076.58661 0.62805 0.00033871 -0.2936 -0.00015834 0.33445 0.00018037 539.3003938406005 42.868 0.28099 42.859 42.725 43.006 -0.0088196 24 12 3 0 0 0 0.015688 1 22958 22958 67.838 11.661 1 11273000 75336 1524 50190 51292 87900 87900 0.05138012131760661 VYVERAEVL 9 Unmodified _VYVERAEVL_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.3012084960938 2 539.300581 1076.58661 0.64364 0.00034711 0.097369 5.2511E-05 0.74101 0.00039963 539.300643944921 48.759 0.51318 43.362 43.12 43.633 -5.3961 102 30 4 0 0 0 0.037253 3 30552 30297;30424;30552 51.415 18.63 1 1011399999.9999999 75337 1524 50190 51292 87901;87902;87903 87903 0.05138012131760661 VYVERILLL 9 Unmodified _VYVERILLL_ 0 0 0 ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2 ENST00000564987.1_1_16:23535694-23546228:-|nuORF ENST00000564987.1_1_16:23535694-23546228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3536987304688 2 559.352617 1116.69068 0.79769 0.00044619 0.15779 8.8262E-05 0.95548 0.00053445 559.3525733615779 82.486 0.28716 81.991 81.843 82.13 -0.4952 27 11 3 0 0 0 0.076472 1 45132 45132 38.615 15.878 1 1935300 75338 2132 50191 51293 87904 87904 0.13700338959301916 VYVERILLL 9 Unmodified _VYVERILLL_ 0 0 0 ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2 ENST00000564987.1_1_16:23535694-23546228:-|nuORF ENST00000564987.1_1_16:23535694-23546228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.353515625 2 559.352617 1116.69068 2.198 0.0012295 -0.46147 -0.00025812 1.7366 0.00097136 559.3523517913502 81.782 0.31623 81.842 81.636 81.952 0.059929 38 12 4 0 0 0 0.047714 2 45176 45176;45274 45.74 16.658 1 12916000 75339 2132 50191 51293 87905;87906 87905 0.13700338959301916 VYVERILLL 9 Unmodified _VYVERILLL_ 0 0 0 ENST00000564987.1_1_16:23535694-23546228:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2 ENST00000564987.1_1_16:23535694-23546228:-|nuORF ENST00000564987.1_1_16:23535694-23546228:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.8524169921875 2 559.352617 1116.69068 1.6273 0.00091022 -1.8 -0.0010069 -0.17277 -9.664E-05 559.3517161051765 98.342 0.16669 92.166 92.087 92.253 -6.1757 29 10 4 0 0 0 0.076472 2 65195 65195;65226 38.615 15.466 1 66190000 75340 2132 50191 51293 87907;87908 87907 0.13700338959301916 VYVGAVNRI 9 Unmodified _VYVGAVNRI_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7901611328125 2 495.790184 989.565815 0.14192 7.0363E-05 -0.19294 -9.566E-05 -0.051023 -2.5297E-05 495.78995457821543 41.244 0.24707 40.941 40.82 41.067 -0.30304 26 11 3 0 0 0 0.042911 1 21829 21829 48.346 7.8973 1 7665600 75341 3047 50192 51294 87909 87909 0.0706146654274562 VYVGAVNRI 9 Unmodified _VYVGAVNRI_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.7918701171875 2 495.790184 989.565815 0.62918 0.00031194 -0.12915 -6.4032E-05 0.50003 0.00024791 495.79034410578737 46.103 0.3751 41.148 40.951 41.327 -4.9549 48 24 3 0 0 0 0.010877 2 28344 28344;28485 77.984 7.8527 1 34686000 75342 3047 50192 51294 87910;87911 87910 0.0706146654274562 VYVGAVNRI 9 Unmodified _VYVGAVNRI_ 0 0 0 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 ENSG00000114554|ENST00000393409|PLXNA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 495.790184 989.565815 0.44724 0.00022174 0.53554 0.00026551 0.98278 0.00048725 495.7902428648224 40.907 0.17915 40.905 40.81 40.989 -0.0017929 -0.092622 0.0005738 NaN 77.984 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1158000 75343 3047 50192 51294 0.0706146654274562 VYVGTAVNL 9 Unmodified _VYVGTAVNL_ 0 0 0 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 ENSG00000108510|ENST00000397786|MED13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2638549804688 2 468.263468 934.512382 0.69286 0.00032444 -0.21559 -0.00010095 0.47727 0.00022349 468.2632985008153 66.003 0.31767 59.827 59.659 59.977 -6.1757 27 18 2 0 0 0 0.052168 1 42916 42916 44.407 6.2558 1 17837000 75344 2577 50193 51295 87912 87912 0.04250669040231969 VYVKCQVY 8 Unmodified _VYVKCQVY_ 0 0 0 REV__ENST00000510786.1_1_4:164449902-164477015:-|nuORF REV__ENST00000510786.1_1_4:164449902-164477015:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 501.7904052734375 2 501.259871 1000.50519 1.3145 0.0006589 1.6813 0.00084277 2.9958 0.0015017 501.26040711224346 59.149 0.45412 53.074 52.886 53.341 -6.0745 55 25 3 0 0 0 8.7369 1 38061 38061 5.7604 0 1 51174000 + 75345 20775 50194 51296 87913 87913 0.004956131681524312 VYVKDLSSF 9 Unmodified _VYVKDLSSF_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.280517578125 2 529.281857 1056.54916 0.86861 0.00045974 -1.5576 -0.00082443 -0.68904 -0.00036469 529.2810058313115 51.057 0.37274 51.057 50.857 51.229 0 31 16 2 0 0 0 0.21643 1 28151 28151 21.537 0 1 45153000 75346 1953 50195 51297 87914 87914 0.023149208661379816 VYVKDLSSF 9 Unmodified _VYVKDLSSF_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7843017578125 2 529.281857 1056.54916 -0.16078 -8.5099E-05 0.14745 7.8041E-05 -0.013335 -7.0578E-06 529.2818693307036 51.599 0.31614 51.165 50.988 51.305 -0.43367 58 16 5 0 0 0 0.012668 2 27771 27771;27876 72.968 33.011 1 117090000 75347 1953 50195 51297 87915;87916 87915 0.023149208661379816 VYVKDLSSF 9 Unmodified _VYVKDLSSF_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.2830810546875 2 529.281857 1056.54916 -0.081117 -4.2934E-05 0.83049 0.00043956 0.74937 0.00039663 529.2822161495363 51.226 0.29964 51.172 51.007 51.306 -0.053871 46 14 4 0 0 0 0.029718 2 27669 27669;27767 55.503 16.618 1 16556000 75348 1953 50195 51297 87917;87918 87917 0.023149208661379816 VYVKDLSSF 9 Unmodified _VYVKDLSSF_ 0 0 0 ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B ENSG00000101350|ENST00000375712|KIF3B MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2825927734375 2 529.281857 1056.54916 1.0064 0.00053266 0.12628 6.6838E-05 1.1327 0.0005995 529.2818331166043 57.487 0.71187 51.46 51.005 51.717 -6.0275 101 39 4 0 0 0 0.011671 2 36755 36755;36887 75.761 35.804 1 426240000 75349 1953 50195 51297 87919;87920 87919 0.023149208661379816 VYVKHNISF 9 Unmodified _VYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.5377807617188 3 369.537953 1105.59203 -0.31007 -0.00011458 0.60406 0.00022322 0.29398 0.00010864 369.5381345781412 34.835 0.22463 34.643 34.518 34.742 -0.19131 23 9 3 0 0 0 0.19127 1 18196 18196 22.658 11.759 1 8529900 75350 1034 50196 51298 87921 87921 0.0434573571421879 VYVKHNISF 9 Unmodified _VYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5377807617188 3 369.537953 1105.59203 0.037928 1.4016E-05 0.34969 0.00012922 0.38762 0.00014324 369.5380696725575 34.601 0.2551 34.628 34.478 34.733 0.027401 36 11 5 0 0 0 0.32871 1 18223 18223 20.415 13.125 1 15805000 75351 1034 50196 51298 87922 87922 0.0434573571421879 VYVKHNISF 9 Unmodified _VYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8048095703125 2 553.803291 1105.59203 0.2016 0.00011165 0.82192 0.00045518 1.0235 0.00056683 553.80360429469 34.6 0.19061 34.627 34.5 34.69 0.027401 13 8 2 0 0 0 0.11784 1 18253 18253 31.268 21.885 1 2463100 75352 1034 50196 51298 87923 87923 0.0434573571421879 VYVKHNISF 9 Unmodified _VYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.5380859375 3 369.537953 1105.59203 1.0532 0.00038921 0.10425 3.8523E-05 1.1575 0.00042773 369.53786134520254 38.798 0.52534 34.347 34.133 34.659 -4.4509 89 33 4 0 0 0 0.32871 2 22838 22838;22970 20.415 12.806 1 116130000 75353 1034 50196 51298 87924;87925 87924 0.0434573571421879 VYVKHNISF 9 Unmodified _VYVKHNISF_ 0 0 0 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 ENSG00000070718|ENST00000396926|AP3M2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.8037719726562 2 553.803291 1105.59203 0.50487 0.0002796 0.24772 0.00013719 0.75259 0.00041679 553.8031075548917 38.785 0.3743 34.334 34.164 34.538 -4.4509 49 23 3 0 0 0 0.029718 1 22851 22851 55.503 30.103 1 33837000 75354 1034 50196 51298 87926 87926 0.0434573571421879 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.53369140625 3 360.53432 1078.58113 -0.50043 -0.00018042 0.45082 0.00016254 -0.049609 -1.7886E-05 360.5345308293898 36.038 0.24449 35.816 35.71 35.954 -0.2224 28 11 3 0 0 0 0.10734 1 18871 18871 43.772 18.891 1 21358000 75355 9317 50197 51299 87927 87927 0.04498333339938654 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5344848632812 3 360.53432 1078.58113 -0.18355 -6.6175E-05 -0.23805 -8.5824E-05 -0.4216 -0.000152 360.5342513196893 35.71 0.2622 35.735 35.602 35.864 0.024967 39 12 4 0 0 0 0.08691 2 18850 18850;18952 40.239 13.971 1 69968000 75356 9317 50197 51299 87928;87929 87928 0.04498333339938654 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2974243164062 2 540.297842 1078.58113 -0.1003 -5.419E-05 -0.48008 -0.00025939 -0.58038 -0.00031358 540.2976122475274 35.71 0.22404 35.735 35.602 35.826 0.024967 19 10 2 0 0 0 0.0082475 1 18872 18872 92.653 48.795 1 9646600 75357 9317 50197 51299 87930 87930 0.04498333339938654 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.5338439941406 3 360.53432 1078.58113 0.95326 0.00034368 0.34414 0.00012408 1.2974 0.00046776 360.5344304413086 39.848 0.53591 35.319 35.013 35.549 -4.5294 113 38 4 0 0 0 0.05447 3 23857 23590;23721;23857 55.503 27.008 1 356680000 75358 9317 50197 51299 87931;87932;87933 87933 0.04498333339938654 VYVKHSISF 9 Unmodified _VYVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2978515625 2 540.297842 1078.58113 0.13297 7.1842E-05 -0.07201 -3.8907E-05 0.060958 3.2936E-05 540.2977346365253 39.864 0.39705 35.335 35.115 35.512 -4.5294 63 28 3 0 0 0 0.013609 2 23768 23633;23768 70.332 31.761 1 111150000 75359 9317 50197 51299 87934;87935 87935 0.04498333339938654 VYVKKRSEF 9 Unmodified _VYVKKRSEF_ 0 0 0 nc|ENSG00000171595|Q9GZS0-2|DNAI2;ENSG00000171595|ENST00000311014|DNAI2 nc|ENSG00000171595|Q9GZS0-2|DNAI2 nc|ENSG00000171595|Q9GZS0-2|DNAI2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.3309326171875 2 578.329673 1154.64479 NaN NaN NaN NaN NaN NaN NaN 63.33 1 62.844 62.344 63.344 -0.48617 0 0 0 0.77016 1 34536 34536 10.824 0 1 75360 8118 50198 51300 87936 87936 0.07365693777023807 VYVLESWHL 9 Unmodified _VYVLESWHL_ 0 0 0 ENST00000576370.5_1_17:53038628-53038757:-|nuORF;nc|ENSG00000166260|Q9Y6N1-2|COX11 ENST00000576370.5_1_17:53038628-53038757:-|nuORF ENST00000576370.5_1_17:53038628-53038757:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3312377929688 2 573.303124 1144.5917 0.30931 0.00017733 1.1819 0.00067761 1.4912 0.00085494 573.3034778863224 78.15 0.26489 78.203 78.037 78.302 0.052444 22 10 3 0 0 0 0.05527 1 43156 43156 50.855 33.742 1 2337200 75361 15524 50199 51301 87937 87937 0.025183159943708233 VYVLESWHL 9 Unmodified _VYVLESWHL_ 0 0 0 ENST00000576370.5_1_17:53038628-53038757:-|nuORF;nc|ENSG00000166260|Q9Y6N1-2|COX11 ENST00000576370.5_1_17:53038628-53038757:-|nuORF ENST00000576370.5_1_17:53038628-53038757:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.303124 1144.5917 0.19527 0.00011195 1.7335 0.00099385 1.9288 0.0011058 573.8050867186955 78.724 0.21199 78.238 78.111 78.323 -0.48596 0.017662 0.00044726 NaN 60.39 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 450420 75362 15524 50199 51301 0.025183159943708233 VYVLLIRNI 9 Unmodified _VYVLLIRNI_ 0 0 0 nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5;ENSG00000103534|ENST00000542583|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 nc|ENSG00000103534|Q6UXY8-4|TMC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8528442382812 2 551.852784 1101.69102 NaN NaN NaN NaN NaN NaN NaN 77.702 1 77.754 77.254 78.254 0.052452 0 0 0 0.056448 1 42892 42892 54.774 20.671 1 75363 2150 50200 51302 87938 87938 0.14423758679117782 VYVLTNLAYF 10 Unmodified _VYVLTNLAYF_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.8264770507812 2 601.826432 1201.63831 3.0576 0.0018401 -3.3423 -0.0020115 -0.28471 -0.00017134 601.8242297626091 97.656 0.32486 97.638 97.492 97.817 -0.018188 25 11 3 0 0 0 0.092434 1 54278 54278 48.346 31.233 1 8994900 75364 2120 50201 51303 87939 87939 0.04555755825640517 VYVLTNLAYF 10 Unmodified _VYVLTNLAYF_ 0 0 0 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 ENSG00000103257|ENST00000261622|SLC7A5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.8265991210938 2 601.826432 1201.63831 0.33181 0.00019969 0.13831 8.3238E-05 0.47012 0.00028293 601.8267127799742 100.49 0.17644 94.312 94.228 94.404 -6.1757 23 10 3 0 0 0 0.0093317 1 67189 67189 88.904 50.728 1 71460000 75365 2120 50201 51303 87940 87940 0.04555755825640517 VYVNSILSPF 10 Unmodified _VYVNSILSPF_ 0 0 0 REV__ENST00000345365.10_1_17:33427675-33427975:-|nuORF REV__ENST00000345365.10_1_17:33427675-33427975:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.808837890625 2 569.810782 1137.60701 NaN NaN NaN NaN NaN NaN NaN 53.565 1 53.502 53.002 54.002 -0.063423 0 0 0 0.78689 1 29059 29059 14.838 2.5976 1 + 75366 25754 50202 51304 87941 87941 0.04371182791555839 VYVPHIHVW 9 Unmodified _VYVPHIHVW_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.2259826660156 3 383.87831 1148.6131 0.30287 0.00011626 0.19885 7.6335E-05 0.50172 0.0001926 383.87864766661943 59.083 0.21184 58.592 58.432 58.644 -0.49079 17 9 2 0 0 0 0.20554 1 32104 32104 9.3831 3.6513 1 993910 75367 6480 50203 51305 87942 87942 0.04473745813743335 VYVPHIHVW 9 Unmodified _VYVPHIHVW_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8785705566406 3 383.87831 1148.6131 0.52492 0.00020151 -0.083456 -3.2037E-05 0.44147 0.00016947 383.8784062586959 58.638 0.40709 58.578 58.394 58.801 -0.060719 69 20 4 0 0 0 0.085487 2 31911 31911;32011 25.399 19.667 1 63986000 75368 6480 50203 51305 87943;87944 87943 0.04473745813743335 VYVPHIHVW 9 Unmodified _VYVPHIHVW_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.319091796875 2 575.313826 1148.6131 0.69464 0.00039964 3.1078 0.001788 3.8025 0.0021876 575.315711338224 58.639 0.20902 58.578 58.47 58.679 -0.060719 18 10 2 0 0 0 0.016115 1 31925 31925 67.413 50.471 1 5588400 75369 6480 50203 51305 87945 87945 0.04473745813743335 VYVPHIHVW 9 Unmodified _VYVPHIHVW_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8786926269531 3 383.87831 1148.6131 0.9483 0.00036403 0.21624 8.3012E-05 1.1645 0.00044704 383.8783352473601 85.695 0.865 79.519 79.075 79.94 -6.1757 152 50 4 0 0 0 0.028712 5 56447 56181;56215;56312;56447;56576 39.957 34.174 1 212220000 75370 6480 50203 51305 87946;87947;87948;87949;87950 87949 0.04473745813743335 VYVPHIHVW 9 Unmodified _VYVPHIHVW_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2;ENST00000521496.5_1_8:124357024-124408597:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3145751953125 2 575.313826 1148.6131 0.55063 0.00031679 0.17405 0.00010013 0.72468 0.00041692 575.3136832978724 85.706 0.70896 79.53 79.037 79.746 -6.1757 90 42 3 0 0 0 0.0079702 2 56376 56376;56514 109.15 88.701 1 47917000 75371 6480 50203 51305 87951;87952 87951 0.04473745813743335 VYVPLKELL 9 Unmodified _VYVPLKELL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7611083984375 2 537.333893 1072.65323 -0.65268 -0.00035071 0.97592 0.0005244 0.32325 0.00017369 537.3343671975364 78.208 0.25316 77.722 77.588 77.841 -0.48595 20 10 3 0 0 0 0.19496 1 42861 42861 13.906 5.9959 1 1251800 75372 1311 50204 51306 87953 87953 0.11981247693665864 VYVPLKELL 9 Unmodified _VYVPLKELL_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.3340454101562 2 537.333893 1072.65323 1.1332 0.00060888 -1.7937 -0.00096379 -0.66051 -0.00035491 537.332956056908 95.994 0.29236 89.819 89.696 89.989 -6.1757 28 17 2 0 0 0 0.07087 1 63580 63580 39.95 17.213 1 19631000 75373 1311 50204 51306 87954 87954 0.11981247693665864 VYVQELQKL 9 Unmodified _VYVQELQKL_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3242797851562 2 560.324057 1118.63356 0.55401 0.00031042 0.46085 0.00025822 1.0149 0.00056865 560.3239214933953 51.987 0.27128 51.554 51.437 51.709 -0.43367 33 13 3 0 0 0 0.013041 1 28057 28057 71.922 24.174 1 14385000 75374 2026 50205 51307 87955 87955 0.07898871682891695 VYVQELQKL 9 Unmodified _VYVQELQKL_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.324951171875 2 560.324057 1118.63356 1.1895 0.00066649 0.54047 0.00030284 1.7299 0.00096933 560.3242568099711 57.44 0.44626 51.412 51.219 51.666 -6.0275 47 23 3 0 0 0 0.0090524 2 36709 36709;36829 85.642 39.942 1 74498000 75375 2026 50205 51307 87956;87957 87956 0.07898871682891695 VYVQELQKL 9 Unmodified _VYVQELQKL_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 560.324057 1118.63356 0.73397 0.00041126 -0.30306 -0.00016981 0.43091 0.00024145 560.3238447291759 51.508 0.25493 51.508 51.348 51.603 0 -0.011076 -0.00059178 NaN 85.642 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 9742100 75376 2026 50205 51307 0.07898871682891695 VYVQHPIT 8 Unmodified _VYVQHPIT_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.763916015625 2 478.763635 955.512717 0.14127 6.7634E-05 0.095903 4.5915E-05 0.23717 0.00011355 478.7636356408663 37.951 0.26001 37.679 37.562 37.822 -0.27133 28 12 3 0 0 0 0.57045 1 19962 19962 28.487 0 1 7788400 75377 16467 50206 51308 87958 87958 0.03318088760090632 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2053833007812 2 552.297842 1102.58113 0.86357 0.00047695 0.40539 0.0002239 1.269 0.00070085 552.2980545927732 51.404 0.19614 51.404 51.326 51.522 0 14 8 2 0 0 0 0.079233 1 28382 28382 43.858 26.916 1 1949200 75378 16467 50207 51309 87959 87959 0.033943333399292897 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2976684570312 2 552.297842 1102.58113 0.41844 0.0002311 -0.30477 -0.00016833 0.11366 6.2776E-05 552.2976711190037 51.937 0.42446 51.503 51.325 51.749 -0.43367 73 21 5 0 0 0 0.0090524 2 27969 27969;28078 85.642 45.684 1 124700000 75379 16467 50207 51309 87960;87961 87960 0.033943333399292897 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2977294921875 2 552.297842 1102.58113 -0.0069222 -3.8231E-06 0.34052 0.00018807 0.3336 0.00018425 552.2980314663182 51.582 0.39594 51.528 51.361 51.756 -0.053875 74 19 5 0 0 0 0.0082661 2 27873 27873;27974 92.491 52.534 1 82877000 75380 16467 50207 51309 87962;87963 87962 0.033943333399292897 VYVQHPITF 9 Unmodified _VYVQHPITF_ 0 0 0 nc|ENSG00000189067|Q99732-2|LITAF;nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF nc|ENSG00000189067|Q99732-2|LITAF nc|ENSG00000189067|Q99732-2|LITAF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.296875 2 552.297842 1102.58113 0.91791 0.00050696 -0.53861 -0.00029747 0.3793 0.00020949 552.2974659775141 57.2 0.60501 51.173 50.891 51.496 -6.0275 106 34 4 0 0 0 0.0082353 3 36435 36435;36564;36693 96.111 40.827 1 864310000 75381 16467 50207 51309 87964;87965;87966 87964 0.033943333399292897 VYVQILQKL 9 Unmodified _VYVQILQKL_ 0 0 0 ENSG00000085840|ENST00000371568|ORC1;ORC1|p.G589D|1|0.1|ENSG00000085840|chr1:52383927-52383927|C/T|missense_variant ENSG00000085840|ENST00000371568|ORC1 ENSG00000085840|ENST00000371568|ORC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3451538085938 2 552.344792 1102.67503 0.51467 0.00028428 -0.0037452 -2.0686E-06 0.51093 0.00028221 552.3448147334773 69.292 0.25505 69.322 69.166 69.422 0.030914 31 12 3 0 0 0 0.0041763 1 38053 38053 120.45 82.476 1 29143000 75382 1421 50208 51310 87967 87967 0.127800524422355 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2178955078125 2 531.321317 1060.62808 0.74835 0.00039762 1.2063 0.00064092 1.9546 0.0010385 531.3223126274386 53.85 0.19834 53.85 53.77 53.968 0 20 8 3 0 0 0 0.18521 1 29873 29873 16.942 2.3606 1 3019500 75383 889;16041 50209 51311 87968 87968 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.321533203125 2 531.321317 1060.62808 0.05116 2.7183E-05 -0.37458 -0.00019902 -0.32342 -0.00017184 531.3210770395269 54.346 0.37692 53.879 53.707 54.084 -0.46664 68 19 4 0 0 0 0.00856 2 29411 29411;29516 100.37 69.735 1 202250000 75384 889;16041 50209 51311 87969;87970 87969 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.3214721679688 2 531.321317 1060.62808 -0.13383 -7.1106E-05 0.64553 0.00034298 0.5117 0.00027188 531.3216038155524 53.997 0.5705 53.931 53.672 54.243 -0.066936 93 28 5 0 0 0 0.0067112 2 29250 29250;29350 112.59 68.45 1 164770000 75385 889;16041 50209 51311 87971;87972 87971 0.10019192891104467 VYVQNVVKL 9 Unmodified _VYVQNVVKL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3216552734375 2 531.321317 1060.62808 0.92876 0.00049347 0.040051 2.128E-05 0.96881 0.00051475 531.3213293357073 60.014 0.92102 53.9 53.557 54.478 -6.1147 167 50 5 0 0 0 0.0083938 4 38700 38422;38563;38700;38825 108 75.692 1 1022299999.9999999 75386 889;16041 50209 51311 87973;87974;87975;87976 87975 0.10019192891104467 VYVQPPLEL 9 Unmodified _VYVQPPLEL_ 0 0 0 nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-6|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 nc|ENSG00000122507|Q3SYG4-3|BBS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.2997436523438 2 529.30005 1056.58555 0.11185 5.9203E-05 0.54554 0.00028875 0.65739 0.00034796 529.3004247629029 85.449 0.35713 79.273 79.037 79.394 -6.1757 35 22 2 0 0 0 0.07916 2 56179 56179;56316 37.974 15.955 1 17287000 75387 3642 50210 51312 87977;87978 87977 0.059517977628502194 VYVSRCPHV 9 Unmodified _VYVSRCPHV_ 0 0 0 REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF REV__ENST00000495756.5_1_3:112255248-112280627:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8518676757812 3 353.851655 1058.53313 1.82 0.00064402 -0.5667 -0.00020053 1.2533 0.00044349 353.8514563641816 95.136 0.75718 88.96 88.642 89.399 -6.1757 70 42 2 0 0 0 0.36964 1 63119 63119 9.544 0.16085 1 9412000 + 75388 27953 50211 51313 87979 87979 0.006209361482433451 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.5263061523438 3 364.525936 1090.55598 -0.75533 -0.00027534 -0.31738 -0.00011569 -1.0727 -0.00039103 364.52598025635103 28.343 0.28345 28.343 28.169 28.453 0 36 15 3 0 0 0 0.14594 1 14596 14596 28.495 17.695 1 12713000 75389 8006 50212 51314 87980 87980 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 364.8602600097656 3 364.525936 1090.55598 0.54721 0.00019947 -0.11201 -4.0831E-05 0.4352 0.00015864 364.52587238331824 28.279 0.39563 28.231 28.036 28.432 -0.04818 58 15 5 0 0 0 0.011291 2 14536 14536;14632 76.825 47.743 1 310000000 75390 8006 50212 51314 87981;87982 87981 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.284912109375 2 546.285266 1090.55598 0.40525 0.00022138 -0.31542 -0.00017231 0.089834 4.9075E-05 546.285014811988 28.29 0.29863 28.235 28.054 28.352 -0.054785 26 11 3 0 0 0 0.0073703 1 14574 14574 110.67 58.406 1 19785000 75391 8006 50212 51314 87983 87983 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.5267333984375 3 364.525936 1090.55598 0.11854 4.321E-05 0.74036 0.00026988 0.8589 0.00031309 364.5261803123222 28.194 0.41172 28.224 28.012 28.424 0.029564 57 16 5 0 0 0 0.076472 2 14606 14606;14702 38.615 25 1 154970000 75392 8006 50212 51314 87984;87985 87984 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2855834960938 2 546.285266 1090.55598 0.19426 0.00010612 0.20994 0.00011469 0.4042 0.00022081 546.2853119134816 28.194 0.2951 28.224 28.037 28.332 0.029564 32 11 4 0 0 0 0.0084276 1 14653 14653 89.401 37.132 1 11545000 75393 8006 50212 51314 87986 87986 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.5264587402344 3 364.525936 1090.55598 1.2132 0.00044226 -0.27422 -9.9959E-05 0.93903 0.0003423 364.5258334199677 31.675 0.65435 27.98 27.704 28.358 -3.6958 126 35 5 0 0 0 0.033587 4 17866 17833;17866;17982;18100 53.404 34.147 1 1862799999.9999998 75394 8006 50212 51314 87987;87988;87989;87990 87988 0.0143227853739063 VYVSRPSHF 9 Unmodified _VYVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2850341796875 2 546.285266 1090.55598 0.46982 0.00025666 -0.31143 -0.00017013 0.1584 8.6531E-05 546.2850795120385 31.688 0.53305 27.993 27.738 28.271 -3.6958 79 28 4 0 0 0 0.0084276 3 17881 17841;17881;18006 99.755 41.055 1 361600000 75395 8006 50212 51314 87991;87992;87993 87992 0.0143227853739063 VYVTAESRF 9 Unmodified _VYVTAESRF_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2759399414062 2 536.277106 1070.53966 0.5637 0.0003023 -3.5756 -0.0019175 -3.0119 -0.0016152 536.7760421001674 38.96 0.32488 38.96 38.79 39.115 0 47 14 5 0 0 0 0.023481 2 20810 20810;20926 60.074 33.19 1 20893000 75396 5491 50213 51315 87994;87995 87994 0.007211525806042118 VYVTAESRF 9 Unmodified _VYVTAESRF_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2757568359375 2 536.277106 1070.53966 -0.10811 -5.7977E-05 -2.6518 -0.0014221 -2.7599 -0.0014801 536.7767708947373 39.256 0.26179 38.969 38.861 39.122 -0.28687 25 12 3 0 0 0 0.023481 1 20689 20689 60.074 29.437 1 6799500 75397 5491 50213 51315 87996 87996 0.007211525806042118 VYVTAESRF 9 Unmodified _VYVTAESRF_ 0 0 0 nc|ENSG00000143322|P42684-4|ABL2;nc|ENSG00000143322|P42684-7|ABL2;nc|ENSG00000143322|P42684-10|ABL2;nc|ENSG00000143322|P42684-5|ABL2;nc|ENSG00000143322|P42684-2|ABL2;nc|ENSG00000143322|P42684-6|ABL2;nc|ENSG00000143322|P42684-3|ABL2;ENSG00000143322|ENST00000502732|ABL2;ENST00000509520.5_1_1:179086401-179112191:-|nuORF;ENST00000504324.1_1_1:179086401-179112191:-|nuORF;nc|ENSG00000143322|P42684-8|ABL2 nc|ENSG00000143322|P42684-4|ABL2 nc|ENSG00000143322|P42684-4|ABL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2777099609375 2 536.277106 1070.53966 0.44467 0.00023846 1.9164 0.0010277 2.3611 0.0012662 536.27814962932 44.081 0.36368 39.316 39.079 39.443 -4.7648 42 23 2 0 0 0 0.023481 1 26796 26796 60.074 22.1 1 40150000 75398 5491 50213 51315 87997 87997 0.007211525806042118 VYVTIDENNIL 11 Unmodified _VYVTIDENNIL_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8414306640625 2 646.840268 1291.66598 0.32141 0.0002079 0.31315 0.00020256 0.63456 0.00041046 646.8406128452164 82.377 0.50671 76.201 75.932 76.438 -6.1757 48 27 2 0 0 0 0.014658 2 54059 54059;54194 88.954 62.07 1 44999000 75399 2112 50214 51316 87998;87999 87998 0.031816142952493465 VYVTSPLVNNF 11 Unmodified _VYVTSPLVNNF_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 626.8309936523438 2 626.832246 1251.64994 0.57832 0.00036251 -1.3419 -0.00084113 -0.76355 -0.00047862 627.3326791133932 75.06 0.11414 74.583 74.516 74.63 -0.47714 6 4 2 0 0 0 0.67922 1 41098 41098 6.2058 0.97511 1 854720 75400 6421 50215 51317 88000 88000 0.03417952849008543 VYVTSPLVNNF 11 Unmodified _VYVTSPLVNNF_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 626.832246 1251.64994 0.41774 0.00026186 2.7121 0.0017 3.1298 0.0019619 626.8347184597386 74.534 0.17967 74.58 74.481 74.66 0.045959 -0.0012405 0.0023601 NaN 6.2058 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 867880 75401 6421 50215 51317 0.03417952849008543 VYVVGNQSTF 10 Unmodified _VYVVGNQSTF_ 0 0 0 nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L;ENSG00000110427|ENST00000658780|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3136596679688 2 557.282389 1112.55022 1.0256 0.00057153 3.0442 0.0016965 4.0698 0.002268 557.2846362347464 58.11 0.20006 58.044 57.93 58.13 -0.066036 14 9 2 0 0 0 0.22507 1 31586 31586 16.942 4.4107 1 2289800 75402 2719 50216 51318 88001 88001 -0.001548647649542545 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7638549804688 2 496.763635 991.512717 0.10602 5.2665E-05 0.22979 0.00011415 0.3358 0.00016681 496.76376106405286 48.995 0.34091 48.995 48.874 49.215 0 43 16 4 0 0 0 0.03327 2 26909 26909;27030 53.576 34.137 1 24499000 75403 8011 50217 51319 88002;88003 88002 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7649230957031 2 496.763635 991.512717 0.63188 0.0003139 -0.38445 -0.00019098 0.24743 0.00012292 496.7633706565617 49.38 0.67366 48.988 48.757 49.431 -0.3923 103 33 5 0 0 0 0.013472 3 26459 26459;26559;26668 70.716 48.969 1 356880000 75404 8011 50217 51319 88004;88005;88006 88004 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7640686035156 2 496.763635 991.512717 0.37706 0.00018731 -0.012689 -6.3036E-06 0.36437 0.00018101 496.7639023798045 48.999 0.34357 48.956 48.791 49.134 -0.04369 51 16 5 0 0 0 0.013472 2 26441 26441;26548 70.716 48.969 1 50818000 75405 8011 50217 51319 88007;88008 88007 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7624816894531 2 496.763635 991.512717 1.1317 0.00056219 -0.41661 -0.00020696 0.71509 0.00035523 496.7633467435086 55.023 0.80001 49.102 48.743 49.543 -5.9211 160 49 5 0 0 0 0.0094915 4 34766 34766;34893;35040;35173 81.864 57.19 1 1378800000 75406 8011 50217 51319 88009;88010;88011;88012 88009 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 992.5181274414062 1 992.519993 991.512717 0.97983 0.0009725 -1.0181 -0.0010104 -0.038218 -3.7932E-05 992.5181658733446 55.023 0.36895 49.102 48.888 49.256 -5.9211 42 22 2 0 0 0 1.1486E-11 1 34988 34988 179.23 121.76 1 32746000 75407 8011 50217 51319 88013 88013 0.01662088760087954 VYVVGTAHF 9 Unmodified _VYVVGTAHF_ 0 0 0 ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD ENST00000463233.1_1_22:50624392-50636456:+|nuORF ENST00000463233.1_1_22:50624392-50636456:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 496.7659301757812 2 496.763635 991.512717 NaN NaN NaN NaN NaN NaN NaN 55.526 1 49.605 49.105 50.105 -5.9211 0 0 0 0.043758 1 35358 35358 60.39 31.903 1 75408 8011 50217 51319 88014 88014 0.01662088760087954 VYVVHAAVL 9 Unmodified _VYVVHAAVL_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7901306152344 2 485.789653 969.564752 0.51736 0.00025133 -0.97595 -0.00047411 -0.45859 -0.00022278 485.7892173880386 51.993 0.1946 51.559 51.474 51.669 -0.43367 17 9 2 0 0 0 0.016115 1 28086 28086 67.413 30.947 1 2311800 75409 829 50218 51320 88015 88015 0.07875252173846548 VYVVHDSLF 9 Unmodified _VYVVHDSLF_ 0 0 0 nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1;RASA1|p.F644*|1|0.06|ENSG00000145715|chr5:87374316-87374317|TT/-|frameshift_variant nc|ENSG00000145715|P20936-2|RASA1 nc|ENSG00000145715|P20936-2|RASA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7799682617188 2 539.782025 1077.5495 0.16169 8.7276E-05 -0.23591 -0.00012734 -0.07422 -4.0063E-05 539.7818651810546 59.325 0.38134 58.834 58.729 59.11 -0.49079 31 17 3 0 0 0 0.087258 1 32265 32265 36.044 17.898 1 2231600 75410 5715 50219 51321 88016 88016 0.013823405859739069 VYVVHDSLF 9 Unmodified _VYVVHDSLF_ 0 0 0 nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1;RASA1|p.F644*|1|0.06|ENSG00000145715|chr5:87374316-87374317|TT/-|frameshift_variant nc|ENSG00000145715|P20936-2|RASA1 nc|ENSG00000145715|P20936-2|RASA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.782025 1077.5495 0.28156 0.00015198 1.2144 0.00065552 1.496 0.0008075 539.7823335860857 58.961 0.44615 58.961 58.677 59.123 0 0.061812 0.0010946 NaN 36.044 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 7144200 75411 5715 50219 51321 0.013823405859739069 VYVVHDSLF 9 Unmodified _VYVVHDSLF_ 0 0 0 nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1;nc|ENSG00000145715|P20936-3|RASA1;RASA1|p.F644*|1|0.06|ENSG00000145715|chr5:87374316-87374317|TT/-|frameshift_variant nc|ENSG00000145715|P20936-2|RASA1 nc|ENSG00000145715|P20936-2|RASA1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 539.782025 1077.5495 0.53041 0.00028631 -0.5736 -0.00030962 -0.043184 -2.331E-05 539.7810279102218 65.079 0.23013 58.903 58.823 59.053 -6.1757 0.003731 -0.00083565 NaN 36.044 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 5361600 75412 5715 50219 51321 0.013823405859739069 VYWCMEYY 8 Unmodified _VYWCMEYY_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5592041015625 3 386.154123 1155.44054 NaN NaN NaN NaN NaN NaN NaN 14.991 1 14.996 14.496 15.496 0.0057774 0 0 0 0.97444 1 7454 7454 0.45834 0.18932 1 + 75413 17830;29521 50220 51322 88017 88017 -0.1309632970014718 VYWEGYVRF 9 Unmodified _VYWEGYVRF_ 0 0 0 ENSG00000175606|ENST00000312184|TMEM70;ENST00000520167.5_1_8:74888148-74891330:+|nuORF;nc|ENSG00000175606|Q9BUB7-3|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 ENSG00000175606|ENST00000312184|TMEM70 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.8016967773438 2 609.800749 1217.58694 0.37926 0.00023127 2.1299 0.0012988 2.5091 0.0015301 609.8020480414629 73.35 0.24668 73.394 73.272 73.519 0.043983 20 10 3 0 0 0 0.171 1 40434 40434 34.402 22.761 1 1656800 75414 8533 50221 51323 88018 88018 -0.0131456814840476 VYWHSSAHI 9 Unmodified _VYWHSSAHI_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1;ENSG00000185418|ENST00000335968|TARS3 ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.1824340820312 3 367.182169 1098.52468 1.8326 0.0006729 -0.13578 -4.9855E-05 1.6968 0.00062304 367.51672254826553 37.087 0.27305 32.804 32.701 32.974 -4.2835 25 16 2 0 0 0 0.2143 1 21737 21737 20.415 8.9198 1 6050900 75415 2966 50222 51324 88019 88019 -0.02064294496722141 VYWHVEGPA 9 Unmodified _VYWHVEGPA_ 0 0 0 ENST00000456318.5_2_3:184079592-184080900:+|nuORF;ENST00000412877.1_1_3:184079592-184081026:+|nuORF ENST00000456318.5_2_3:184079592-184080900:+|nuORF ENST00000456318.5_2_3:184079592-184080900:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7593383789062 2 529.258717 1056.50288 0.99236 0.00052521 -0.12714 -6.7291E-05 0.86522 0.00045792 529.2587364577428 48.567 0.77841 43.17 42.825 43.604 -5.3961 131 41 5 0 0 0 0.28047 1 30450 30450 18.135 1.1927 1 1114800000 75416 13596 50223 51325 88020 88020 -0.023110992452757273 VYWKIYNSI 9 Unmodified _VYWKIYNSI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3193359375 2 593.318774 1184.623 0.50294 0.0002984 -0.40601 -0.00024089 0.096926 5.7508E-05 593.318273985485 64.784 0.53117 64.784 64.425 64.956 7.6294E-06 64 26 4 0 0 0 0.0082661 2 35446 35446;35560 92.491 68.471 1 31321000 75417 3132 50224 51326 88021;88022 88021 0.03806889028464866 VYWKIYNSI 9 Unmodified _VYWKIYNSI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.3187866210938 2 593.318774 1184.623 0.11812 7.0083E-05 0.37312 0.00022138 0.49124 0.00029146 593.319088489595 76.69 1.3683 70.514 70.111 71.479 -6.1757 104 76 2 0 0 0 9.8938E-21 5 50289 50057;50179;50289;50530;50670 193.29 126.84 1 26417000 75418 3132 50224 51326 88023;88024;88025;88026;88027 88025 0.03806889028464866 VYWKIYNSI 9 Unmodified _VYWKIYNSI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MSMS AL20221201_MKP_PDAC_01 4 593.3178100585938 2 593.318774 1184.623 NaN NaN NaN NaN NaN NaN NaN 76.335 1 70.159 69.659 70.659 -6.1757 0 0 0 0.026638 1 49931 49931 70.332 40.491 1 75419 3132 50224 51326 88028 88028 0.03806889028464866 VYWLAGAQACF 11 Carbamidomethyl (C) _VYWLAGAQAC(Carbamidomethyl (C))F_ VYWLAGAQAC(1)F VYWLAGAQAC(42)F 0 1 0 ENST00000514031.5_1_4:2932567-2933551:-|nuORF;ENSG00000109736|ENST00000355443|MFSD10 ENST00000514031.5_1_4:2932567-2933551:-|nuORF ENST00000514031.5_1_4:2932567-2933551:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 643.306640625 2 643.305341 1284.59613 NaN NaN NaN NaN NaN NaN NaN 92.034 1 85.858 85.358 86.358 -6.1757 0 0 0 0.15413 1 60853 60853 42.095 32.747 1 75420 2667 50225 51327 88029 88029 270 -0.03478542854395528 VYWNVGFLKY 10 Unmodified _VYWNVGFLKY_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MSMS AL20221201_MKP_PDAC_01 4 644.8411865234375 2 644.839874 1287.66519 NaN NaN NaN NaN NaN NaN NaN 96.647 1 90.471 89.971 90.971 -6.1757 0 0 0 0.34963 1 64049 64049 47.749 22.349 1 75421 829 50226 51328 88030 88030 0.032868644368363675 VYWPLFVLI 9 Unmodified _VYWPLFVLI_ 0 0 0 ENST00000484243.1_1_1:65886407-65895881:+|nuORF;ENSG00000213625|ENST00000371065|LEPROT ENST00000484243.1_1_1:65886407-65895881:+|nuORF ENST00000484243.1_1_1:65886407-65895881:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.3447265625 2 575.338978 1148.6634 1.561 0.00089812 1.6845 0.00096914 3.2455 0.0018673 575.340970022025 103.03 0.049515 96.853 96.829 96.879 -6.1757 31 12 3 0 0 0 0.10734 1 69109 69109 45.75 24.879 1 5232100 75422 14149 50227 51329 88031 88031 0.09501855418898231 VYWSIDLSCL 10 Unmodified _VYWSIDLSCL_ 0 0 0 REV__ARHGEF3-ARF4|1|fusion REV__ARHGEF3-ARF4|1|fusion MSMS AL20221201_MKP_PDAC_01 4 599.7916259765625 2 599.794275 1197.574 NaN NaN NaN NaN NaN NaN NaN 43.511 1 38.747 38.247 39.247 -4.7648 0 0 0 0.51756 1 26443 26443 25.399 3.8623 1 + 75423 16729 50228 51330 88032 88032 -0.01688767322775675 VYWTQLNMF 9 Oxidation (M) _VYWTQLNM(Oxidation (M))F_ VYWTQLNM(1)F VYWTQLNM(60)F 0 0 1 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.2875366210938 2 609.286617 1216.55868 0.50792 0.00030947 -0.15085 -9.1911E-05 0.35707 0.00021756 609.2868074926831 78.507 0.30898 78.559 78.368 78.677 0.052452 46 12 4 0 0 0 0.023164 1 43404 43404 60.39 34.99 1 29948000 75424 3388 50229 51331 88033 88033 603 -0.04093634119976741 VYWTQLNMF 9 Unmodified _VYWTQLNMF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.2907104492188 2 601.289159 1200.56377 1.7642 0.0010608 1.6083 0.00096703 3.3725 0.0020278 601.2901550672741 93.836 0.39362 93.859 93.644 94.038 0.022987 43 15 4 0 0 0 0.047196 2 52116 52116;52213 46.021 34.381 1 9159200 75425 3388 50229 51332 88034;88035 88034 -0.028493302573679102 VYWTQLNMF 9 Unmodified _VYWTQLNMF_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2 ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.2894287109375 2 601.289159 1200.56377 0.024847 1.494E-05 -0.057284 -3.4444E-05 -0.032437 -1.9504E-05 601.2893783159994 99.927 0.19118 93.751 93.664 93.855 -6.1757 40 13 4 0 0 0 0.0095811 1 66663 66663 81.613 64.5 1 297510000 75426 3388 50229 51332 88036 88036 -0.028493302573679102 VYWTSQFLTW 10 Unmodified _VYWTSQFLTW_ 0 0 0 ENSG00000164187|ENST00000296603|LMBRD2;ENST00000503535.1_1_5:36141207-36142632:-|nuORF ENSG00000164187|ENST00000296603|LMBRD2 ENSG00000164187|ENST00000296603|LMBRD2 MSMS AL20221201_MKP_PDAC_01 4 665.826416015625 2 665.826963 1329.63937 NaN NaN NaN NaN NaN NaN NaN 48.971 1 43.575 43.075 44.075 -5.3961 0 0 0 0.3465 1 30545 30545 34.402 8.1336 1 75427 7159 50230 51333 88037 88037 -0.012260298054343366 VYYCKKCTY 9 Carbamidomethyl (C) _VYYCKKC(Carbamidomethyl (C))TY_ VYYC(0.022)KKC(0.978)TY VYYC(-16)KKC(16)TY 0 1 0 ENSG00000101126|ENST00000621696|ADNP;ADNP|p.D174V|1|0.31|ENSG00000101126|chr20:50894193-50894193|T/A|missense_variant ENSG00000101126|ENST00000621696|ADNP ENSG00000101126|ENST00000621696|ADNP MSMS AL20221201_MKP_PDAC_01 4 614.2777709960938 2 614.280477 1226.5464 NaN NaN NaN NaN NaN NaN NaN 55.294 1 49.373 48.873 49.873 -5.9211 0 0 0 0.10759 1 35182 35182 41.84 11.615 2 75428 1915 50231 51334 88038 88038 189 -0.057809938546824924 VYYCLRKRRMQ 11 Unmodified _VYYCLRKRRMQ_ 0 0 0 ENSG00000166897|ENST00000402918|ELFN2 ENSG00000166897|ENST00000402918|ELFN2 ENSG00000166897|ENST00000402918|ELFN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2745971679688 3 505.939357 1514.79624 0.9299 0.00047047 0.69194 0.00035008 1.6218 0.00082055 505.9396407504646 57.975 0.31659 57.909 57.755 58.072 -0.066036 44 15 4 0 0 0 0.72952 1 31636 31636 0.50596 0 1 14274000 75429 7547 50232 51335 88039 88039 0.059436085415654816 VYYEVIQLI 9 Unmodified _VYYEVIQLI_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.3198852539062 2 570.320983 1138.62741 0.53197 0.00030339 -0.098103 -5.595E-05 0.43386 0.00024744 570.32089799099 96.703 0.26553 96.399 96.25 96.516 -0.30472 41 14 4 0 0 0 0.40476 1 52767 52767 18.135 8.7875 1 1638800 75430 10210 50233 51336 88040 88040 0.06364353451385796 VYYEVIQLI 9 Unmodified _VYYEVIQLI_ 0 0 0 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 ENSG00000198952|ENST00000361813|SMG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3215942382812 2 570.320983 1138.62741 1.2778 0.00072878 -0.07955 -4.5369E-05 1.1983 0.00068341 570.8227682645686 100.34 0.11213 94.163 94.103 94.215 -6.1757 11 6 2 0 0 0 0.078314 1 67065 67065 50.855 10.898 1 50618000 75431 10210 50233 51336 88041 88041 0.06364353451385796 VYYFTGTYT 9 Unmodified _VYYFTGTYT_ 0 0 0 ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG ENSG00000099338|ENST00000409235|CATSPERG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7587280273438 2 557.758215 1113.50188 0.79145 0.00044144 0.18282 0.00010197 0.97427 0.0005434 557.7581727040106 57.229 0.32478 57.229 57.022 57.346 0 36 14 3 0 0 0 0.41742 1 31895 31895 11.64 0.81637 1 13674000 75432 1695 50234 51337 88042 88042 -0.05033358404830324 VYYFVSHDF 9 Unmodified _VYYFVSHDF_ 0 0 0 nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1 nc|ENSG00000164251|P55085|F2RL1 nc|ENSG00000164251|P55085|F2RL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7678833007812 2 588.771657 1175.52876 -1.0268 -0.00060455 -3.1379 -0.0018475 -4.1647 -0.002452 588.76956708227 32.743 0.17218 32.743 32.639 32.811 0 16 8 2 0 0 0 0.20428 1 17116 17116 24.674 2.9272 1 3634600 75433 7167 50235 51338 88043 88043 -0.05198249793670584 VYYFYERTR 9 Unmodified _VYYFYERTR_ 0 0 0 REV__ENSG00000213563|ENST00000524821|C8orf82 REV__ENSG00000213563|ENST00000524821|C8orf82 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.88525390625 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 51.242 1 50.828 50.328 51.328 -0.41351 0 0 0 0.86004 1 27617 27617 0.26902 0.1097 1 + 75434 24286 50236 51339 88044 88044 -0.006117980909721155 VYYFYERTR 9 Unmodified _VYYFYERTR_ 0 0 0 REV__ENSG00000213563|ENST00000524821|C8orf82 REV__ENSG00000213563|ENST00000524821|C8orf82 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8849792480469 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 48.984 1 48.94 48.44 49.44 -0.04369 0 0 0 0.85261 1 26453 26453 1.1933 0.41681 1 + 75435 24286 50236 51339 88045 88045 -0.006117980909721155 VYYGHTNYI 9 Unmodified _VYYGHTNYI_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.77197265625 2 565.269281 1128.52401 0.85728 0.0004846 2.0834 0.0011777 2.9407 0.0016623 565.2701040358089 43.178 0.29657 38.413 38.18 38.477 -4.7648 34 19 2 0 0 0 0.047788 1 26233 26233 45.7 22.963 1 16046000 75436 4894 50237 51340 88046 88046 -0.03511133936444821 VYYLYNLK 8 Unmodified _VYYLYNLK_ 0 0 0 ENST00000228827.7_1_12:110890303-110890486:-|nuORF ENST00000228827.7_1_12:110890303-110890486:-|nuORF ENST00000228827.7_1_12:110890303-110890486:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7959594726562 2 538.294768 1074.57498 0.24519 0.00013199 4.3294 0.0023305 4.5746 0.0024625 538.2967111833369 52.933 0.58422 52.481 52.046 52.631 -0.45173 44 29 2 0 0 0 8.7369 1 28624 28624 19.439 12.716 1 4303800 75437 11055 50238 51341 88047 88047 0.040678151084193814 VYYPVRHHL 9 Unmodified _VYYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.5513610839844 3 395.217214 1182.62981 0.21533 8.5101E-05 -0.18243 -7.2099E-05 0.032899 1.3002E-05 395.2169172268821 25.015 0.18702 24.998 24.883 25.07 -0.017008 19 7 3 0 0 0 0.023164 1 12778 12778 45.7 26.978 1 11588000 75438 9805 50239 51342 88048 88048 0.045802466996974545 VYYPVRHHL 9 Unmodified _VYYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2166137695312 3 395.217214 1182.62981 0.062736 2.4794E-05 -0.3871 -0.00015299 -0.32437 -0.00012819 395.2169636561684 24.653 0.22289 24.677 24.533 24.756 0.024429 20 8 3 0 0 0 0.052168 1 12705 12705 39.95 24.211 1 32129000 75439 9805 50239 51342 88049 88049 0.045802466996974545 VYYPVRHHL 9 Unmodified _VYYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.2168273925781 3 395.217214 1182.62981 0.61078 0.00024139 0.58963 0.00023303 1.2004 0.00047442 395.2171598124128 27.92 0.49032 24.772 24.587 25.077 -3.1482 91 26 4 0 0 0 0.052168 2 15454 15454;15573 32.786 23.242 1 142690000 75440 9805 50239 51342 88050;88051 88050 0.045802466996974545 VYYPVRHHL 9 Unmodified _VYYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.322265625 2 592.322183 1182.62981 0.2164 0.00012818 0.48365 0.00028648 0.70005 0.00041466 592.3225589225715 27.95 0.25761 24.802 24.639 24.896 -3.1482 21 13 3 0 0 0 0.0090851 1 15553 15553 85.357 51.169 1 10085000 75441 9805 50239 51342 88052 88052 0.045802466996974545 VYYSEMHKI 9 Unmodified _VYYSEMHKI_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5269775390625 3 390.526837 1168.55868 1.3463 0.00052578 -0.60503 -0.00023628 0.7413 0.0002895 390.5267980139971 34.186 0.28199 30.2 30.097 30.379 -3.9853 29 15 3 0 0 0 0.06294 1 19686 19686 45.74 27.367 1 10082000 75442 5851 50240 51343 88053 88053 -0.018856341199807503 VYYVHNIKF 9 Unmodified _VYYVHNIKF_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.8822021484375 3 394.88172 1181.62333 0.98613 0.0003894 -1.3334 -0.00052654 -0.34728 -0.00013713 394.8814387276194 46.994 0.21305 46.961 46.856 47.069 -0.033421 32 10 4 0 0 0 0.047788 1 25287 25287 45.7 34.9 1 33858000 75443 4855 50241 51344 88054 88054 0.039783087483101554 VYYVHNIKF 9 Unmodified _VYYVHNIKF_ 0 0 0 ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A ENSG00000136802|ENST00000372600|LRRC8A MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8824462890625 3 394.88172 1181.62333 0.62133 0.00024535 -0.0029136 -1.1505E-06 0.61842 0.0002442 395.2162331139054 51.822 0.18948 46.087 46.004 46.194 -5.7345 23 12 3 0 0 0 0.023481 1 32643 32643 60.074 41.701 1 50906000 75444 4855 50241 51344 88055 88055 0.039783087483101554 VYYVYDDL 8 Unmodified _VYYVYDDL_ 0 0 0 REV__ENSG00000170881|ENST00000303545|RNF139 REV__ENSG00000170881|ENST00000303545|RNF139 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.8060302734375 2 525.244941 1048.47533 0.51719 0.00027165 1.0462 0.00054952 1.5634 0.00082118 525.2460111495132 61.434 0.065907 61.434 61.389 61.455 0 4 2 2 0 0 0 8.7369 1 34242 34242 6.3541 0 1 424240 + 75445 22518 50242 51345 88056 88056 -0.04697047296190249 WAAVFGGG 8 Unmodified _WAAVFGGG_ 0 0 0 nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.6907653808594 2 382.689939 763.365324 0.72348 0.00027687 0.73179 0.00028005 1.4553 0.00055692 382.6902268248473 74.53 0.6352 74.054 73.69 74.326 -0.47588 44 26 2 0 0 0 0.81107 3 40678 40678;40785;40888 0 0 1 1341400 75446 2177 50243 51346 88057;88058;88059 88057 -0.025823830540275594 WACGRLPQY 9 Carbamidomethyl (C) _WAC(Carbamidomethyl (C))GRLPQY_ WAC(1)GRLPQY WAC(110)GRLPQY 0 1 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.7780151367188 2 575.776751 1149.53895 1.2136 0.00069874 3.7454 0.0021565 4.959 0.0028553 575.7787553567653 50.145 0.30876 44.606 44.531 44.839 -5.5391 35 19 2 0 0 0 0.0077963 1 31405 31405 109.63 47.057 1 28423000 75447 8844 50244 51347 88060 88060 840 -0.029839653400813404 WADRQRDCLW 10 Unmodified _WADRQRDCLW_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.8226928710938 2 674.814396 1347.61424 1.0063 0.00067904 0.33084 0.00022325 1.3371 0.00090229 674.8137657122595 99.995 0.11546 93.819 93.769 93.884 -6.1757 17 7 3 0 0 0 0.42143 1 66755 66755 20.415 0 1 20112000 75448 5089 50245 51348 88061 88061 -0.045664078796562535 WADSPNPG 8 Unmodified _WADSPNPG_ 0 0 0 nc|ENSG00000177302|Q13472-3|TOP3A;nc|ENSG00000177302|Q13472-2|TOP3A;ENSG00000177302|ENST00000321105|TOP3A nc|ENSG00000177302|Q13472-3|TOP3A nc|ENSG00000177302|Q13472-3|TOP3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.1847839355469 2 422.185217 842.355882 -0.32164 -0.00013579 -0.027493 -1.1607E-05 -0.34913 -0.0001474 422.18525362626707 52.07 0.17636 52.07 51.976 52.152 0 13 7 2 0 0 0 0.5284 1 28794 28794 32.117 32.117 1 4319400 75449 8673 50246 51349 88062 88062 -0.0716019613022354 WAEHGCQDSDE 11 Unmodified _WAEHGCQDSDE_ 0 0 0 REV__ENSG00000136378|ENST00000388820|ADAMTS7 REV__ENSG00000136378|ENST00000388820|ADAMTS7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.7302856445312 2 638.730391 1275.44623 NaN NaN NaN NaN NaN NaN NaN 15.226 1 15.232 14.732 15.732 0.0057774 0 0 0 0.9435 1 7580 7580 0 0 1 + 75450 20158 50247 51350 88063 88063 -0.18047559654792167 WAFRKWKWYQF 11 Unmodified _WAFRKWKWYQF_ 0 0 0 nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A nc|ENSG00000130294|Q12756|KIF1A nc|ENSG00000130294|Q12756|KIF1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 823.4216918945312 2 823.424971 1644.83539 NaN NaN NaN NaN NaN NaN NaN 31.39 1 31.39 30.89 31.89 0 0 0 0 0.94337 1 16348 16348 0 0 1 75451 4197 50248 51351 88064 88064 0.03876400159106197 WAFYLVPLPWL 11 Unmodified _WAFYLVPLPWL_ 0 0 0 REV__ENSG00000204195|ENST00000374521|AWAT1 REV__ENSG00000204195|ENST00000374521|AWAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.9281005859375 3 468.92867 1403.76418 NaN NaN NaN NaN NaN NaN NaN 37.559 1 37.576 37.076 38.076 0.01704 0 0 0 0.93923 1 19944 19944 3.0723 1.1448 1 + 75452 24145 50249 51352 88065 88065 0.07844887401734013 WAGNPVFTAF 10 Unmodified _WAGNPVFTAF_ 0 0 0 ENSG00000174576|ENST00000311034|NPAS4;nc|ENSG00000174576|Q8IUM7-3|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 ENSG00000174576|ENST00000311034|NPAS4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.2115478515625 2 555.274367 1108.53418 0.58659 0.00032572 1.4096 0.00078269 1.9962 0.0011084 555.2759425659675 55.308 0.2141 54.83 54.712 54.926 -0.47798 15 9 2 0 0 0 0.23489 1 29952 29952 7.9102 1.5561 1 1869900 75453 8436 50250 51353 88066 88066 -0.015745262111977354 WAHLRLLGK 9 Unmodified _WAHLRLLGK_ 0 0 0 ENST00000435580.1_1_1:160032398-160034603:+|nuORF ENST00000435580.1_1_1:160032398-160034603:+|nuORF ENST00000435580.1_1_1:160032398-160034603:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.2249450683594 3 365.225821 1092.65563 NaN NaN NaN NaN NaN NaN NaN 21.935 1 21.949 21.449 22.449 0.013796 0 0 0 0.85261 1 11254 11254 1.1933 0.79263 1 75454 13315 50251 51354 88067 88067 0.11301140941986887 WAIFVLLHI 9 Unmodified _WAIFVLLHI_ 0 0 0 ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-6|NUP98 ENSG00000110713|ENST00000324932|NUP98 ENSG00000110713|ENST00000324932|NUP98 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 371.229248046875 3 371.226939 1110.65899 NaN NaN NaN NaN NaN NaN NaN 38.578 1 38.578 38.078 39.078 0 0 0 0 0.86004 1 20615 20615 0.26902 0 1 75455 2734 50252 51355 88068 88068 0.10808390995998707 WALAAAAA 8 Unmodified _WALAAAAA_ 0 0 0 ENST00000446848.6_1_7:26331515-26331632:+|nuORF ENST00000446848.6_1_7:26331515-26331632:+|nuORF ENST00000446848.6_1_7:26331515-26331632:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 372.8822631835938 2 372.705589 743.396624 1.1117 0.00041432 -0.85272 -0.00031781 0.25893 9.6505E-05 372.70568767883066 43.98 0.33204 39.215 39.019 39.351 -4.7648 32 21 2 0 0 0 8.7369 1 26878 26878 0.79363 0 1 9491300 75456 13469 50253 51356 88069 88069 0.014661899800216815 WALAEVAEGPA 11 Unmodified _WALAEVAEGPA_ 0 0 0 ENST00000314686.9_1_3:40518691-40519449:+|nuORF ENST00000314686.9_1_3:40518691-40519449:+|nuORF ENST00000314686.9_1_3:40518691-40519449:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.808349609375 2 557.282389 1112.55022 0.3978 0.00022169 -0.1985 -0.00011062 0.19931 0.00011107 557.2820320096114 42.146 0.24905 42.146 42.011 42.26 0 17 12 2 0 0 0 0.28953 1 22759 22759 8.7454 0 1 4482900 75457 11726 50254 51357 88070 88070 -0.001548647649542545 WALFKFLNP 9 Unmodified _WALFKFLNP_ 0 0 0 REV__nc|ENSG00000242802|O43299-3|AP5Z1 REV__nc|ENSG00000242802|O43299-3|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.3155517578125 2 568.318577 1134.6226 0.26731 0.00015192 -2.8875 -0.001641 -2.6202 -0.0014891 568.3172145907362 56.531 0.21733 56.462 56.32 56.538 -0.068741 19 10 2 0 0 0 0.2143 1 30729 30729 21.747 1.293 1 8458200 + 75458 24467 50255 51358 88071 88071 0.06067514099277105 WALGSRQCYN 10 Unmodified _WALGSRQCYN_ 0 0 0 ENST00000587856.1_1_17:43311355-43318139:+|nuORF ENST00000587856.1_1_17:43311355-43318139:+|nuORF ENST00000587856.1_1_17:43311355-43318139:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8529052734375 3 399.853835 1196.53968 -0.14622 -5.8465E-05 -2.5707 -0.0010279 -2.7169 -0.0010864 399.85304371990196 52.363 0.22398 52.363 52.243 52.467 0 15 9 2 0 0 0 0.68719 1 28999 28999 2.086 0 1 1649000 75459 15640 50256 51359 88072 88072 -0.050731706910255525 WALILHATAL 10 Unmodified _WALILHATAL_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.8277587890625 2 554.829309 1107.64407 -0.21989 -0.000122 -2.8029 -0.0015551 -3.0228 -0.0016771 554.8276731270012 35.751 0.14895 35.528 35.45 35.599 -0.2224 10 5 2 0 0 0 0.53722 1 18748 18748 16.942 3.8998 1 931480 75460 4143 50257 51360 88073 88073 0.0945489912796802 WALLQRNEFLL 11 Unmodified _WALLQRNEFLL_ 0 0 0 nc|ENSG00000165716|Q5VUD6-2|DIPK1B;ENSG00000165716|ENST00000371692|DIPK1B nc|ENSG00000165716|Q5VUD6-2|DIPK1B nc|ENSG00000165716|Q5VUD6-2|DIPK1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 468.6015625 3 468.266233 1401.77687 0.55256 0.00025875 -0.41594 -0.00019477 0.13662 6.3976E-05 468.2656619812645 58.534 0.29393 58.473 58.313 58.607 -0.060719 32 14 3 0 0 0 0.5942 1 31863 31863 11.631 1.8671 1 4598500 75461 7380 50258 51361 88074 88074 0.09205298793972361 WALWHTKW 8 Unmodified _WALWHTKW_ 0 0 0 REV__ENST00000502875.1_1_4:141564423-141564600:-|nuORF REV__ENST00000502875.1_1_4:141564423-141564600:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2915649414062 2 564.292894 1126.57123 NaN NaN NaN NaN NaN NaN NaN 15.141 1 15.147 14.647 15.647 0.0057774 0 0 0 0.97444 1 7535 7535 0.6015 0.076735 1 + 75462 28031 50259 51362 88075 88075 0.01301190125195717 WAMNQTEKLGL 11 Unmodified _WAMNQTEKLGL_ 0 0 0 REV__ENSG00000178440|ENST00000651763|TIMM23B-AGAP6 REV__ENSG00000178440|ENST00000651763|TIMM23B-AGAP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8876647949219 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 103.16 1 103.11 102.61 103.61 -0.047928 0 0 0 0.94165 1 57290 57290 0.45452 0 1 + 75463 23045 50260 51363 88076 88076 0.010571113458127002 WAPLLAPVRV 10 Unmodified _WAPLLAPVRV_ 0 0 0 REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.566162109375 3 374.565843 1120.6757 0.58213 0.00021805 1.0153 0.0003803 1.5975 0.00059835 374.5661272163831 65.192 0.67091 65.192 64.76 65.431 7.6294E-06 94 32 4 0 0 0 0.71123 1 35787 35787 0.69767 0 1 18675000 + 75464 25320 50261 51364 88077 88077 0.12018891881939453 WAPLLAPVRV 10 Unmodified _WAPLLAPVRV_ 0 0 0 REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5666809082031 3 374.565843 1120.6757 0.82427 0.00030874 1.0861 0.00040682 1.9104 0.00071557 374.5662127903873 65.928 0.63943 65.938 65.44 66.08 0.0095596 60 31 2 0 0 0 0.71123 1 35928 35928 0.69767 0 1 14455000 + 75465 25320 50261 51364 88078 88078 0.12018891881939453 WAPLLAPVRV 10 Unmodified _WAPLLAPVRV_ 0 0 0 REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF REV__ENST00000301453.7_1_11:63765124-63765358:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 374.565843 1120.6757 -0.029771 -1.1151E-05 2.059 0.00077125 2.0293 0.0007601 374.9008522308134 65.192 0.22038 65.192 65.052 65.272 0 -3.5185E-05 0.00077212 NaN 0.69767 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 324370 + 75466 25320 50261 51364 0.12018891881939453 WAPNWTDPHFD 11 Unmodified _WAPNWTDPHFD_ 0 0 0 REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 693.3009033203125 2 693.299101 1384.58365 NaN NaN NaN NaN NaN NaN NaN 73.159 1 73.159 72.659 73.659 0 0 0 0 0.94301 1 40727 40727 0.35063 0 1 + 75467 21513 50262 51365 88079 88079 -0.09325862993068768 WAPRYEGAF 9 Unmodified _WAPRYEGAF_ 0 0 0 chr16:30200221-30200725|48|16.88|0.0|20.69|+|0|TE_info:MER5B,MER5B_dup21189,hAT-Charlie,DNA,donor,-,30200092,30200221|None,SULT1A3|1 chr16:30200221-30200725|48|16.88|0.0|20.69|+|0|TE_info:MER5B,MER5B_dup21189,hAT-Charlie,DNA,donor,-,30200092,30200221|None,SULT1A3|1 chr16:30200221-30200725|48|16.88|0.0|20.69|+|0|TE_info:MER5B,MER5B_dup21189,hAT-Charlie,DNA,donor,-,30200092,30200221|None,SULT1A3|1 MSMS AL20221201_MKP_PDAC_01 4 548.7630004882812 2 548.764166 1095.51378 NaN NaN NaN NaN NaN NaN NaN 59.877 1 53.763 53.263 54.263 -6.1147 0 0 0 0.36554 1 38493 38493 21.747 8.2388 1 75468 91 50263 51366 88080 88080 -0.030156968710116416 WAQPQDAL 8 Unmodified _WAQPQDAL_ 0 0 0 ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK ENSG00000006530|ENST00000649286|AGK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7287902832031 2 464.729792 927.445031 NaN NaN NaN NaN NaN NaN NaN 65.607 1 65.607 65.107 66.107 0 0 0 0 0.97444 1 36593 36593 2.3027 0 1 75469 338 50264 51367 88081 88081 -0.021593611707316995 WARKVNVVL 9 Unmodified _WARKVNVVL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.2257385253906 3 362.225709 1083.6553 -0.32367 -0.00011724 0.85799 0.00031079 0.53433 0.00019355 362.2259727649666 41.612 0.2301 41.611 41.491 41.721 -0.0017891 17 10 2 0 0 0 0.087258 1 22250 22250 32.786 21.291 1 5769300 75470 4951 50265 51368 88082 88082 0.11681721222134911 WARKVNVVL 9 Unmodified _WARKVNVVL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.2262878417969 3 362.225709 1083.6553 1.2442 0.00045067 0.54903 0.00019887 1.7932 0.00064954 362.22582950433565 46.143 0.34586 41.188 40.969 41.315 -4.9549 39 22 2 0 0 0 0.30562 1 28401 28401 11.495 0.6952 1 13842000 75471 4951 50265 51368 88083 88083 0.11681721222134911 WASRPVPGL 9 Unmodified _WASRPVPGL_ 0 0 0 ENST00000497691.5_1_6:3273291-3410459:-|nuORF ENST00000497691.5_1_6:3273291-3410459:-|nuORF ENST00000497691.5_1_6:3273291-3410459:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7769775390625 2 491.777077 981.5396 0.043019 2.1156E-05 1.4567 0.00071639 1.4998 0.00073754 491.77770347123413 71.975 0.31848 71.975 71.819 72.137 0 30 14 3 0 0 0 0.54444 1 40077 40077 4.756 0 1 1862600 75472 14404 50266 51369 88084 88084 0.04809197371275786 WATAARAP 8 Unmodified _WATAARAP_ 0 0 0 ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2273559570312 2 422.22722 842.439886 0.10839 4.5765E-05 1.5099 0.00063753 1.6183 0.00068329 422.22781056030345 55.779 0.29007 55.301 55.132 55.422 -0.47798 37 13 4 0 0 0 0.80676 1 30296 30296 2.5775 0 1 9698500 75473 12318 50267 51370 88085 88085 0.012363797573129887 WATAARAP 8 Unmodified _WATAARAP_ 0 0 0 ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 422.22722 842.439886 -0.43901 -0.00018536 1.5514 0.00065504 1.1124 0.00046967 422.22787060252966 55.269 0.33601 55.269 55.101 55.437 0 -0.02826 -7.6879E-05 NaN 2.5775 37 14 3 NaN NaN NaN NaN 0 NaN NaN 0 24347000 75474 12318 50267 51370 0.012363797573129887 WATAARAP 8 Unmodified _WATAARAP_ 0 0 0 ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF ENST00000369800.5_1_5:172116953-172117430:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 422.22722 842.439886 -0.00073865 -3.1188E-07 1.8527 0.00078226 1.8519 0.00078194 422.2279990866203 55.39 0.33887 55.321 55.138 55.477 -0.068741 0.023847 0.00017756 NaN 2.5775 63 16 5 NaN NaN NaN NaN 0 NaN NaN 0 75590000 75475 12318 50267 51370 0.012363797573129887 WATSRPAV 8 Unmodified _WATSRPAV_ 0 0 0 REV__nc|ENSG00000138376|Q99728-3|BARD1 REV__nc|ENSG00000138376|Q99728-3|BARD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 444.240966796875 2 444.240327 886.466101 0.48515 0.00021552 -0.66927 -0.00029732 -0.18412 -8.1793E-05 444.2400347328574 56.911 0.49318 56.911 56.662 57.156 0 35 21 2 0 0 0 0.80232 1 31635 31635 5.2307 0.47466 1 1678100 + 75476 29657 50268 51371 88086 88086 0.018326489288028824 WATWNYVY 8 Unmodified _WATWNYVY_ 0 0 0 REV__ENSG00000136235|ENST00000258733|GPNMB REV__ENSG00000136235|ENST00000258733|GPNMB MULTI-SECPEP AL20221201_MKP_PDAC_01 4 551.2698364257812 2 551.753267 1101.49198 0.84816 0.00046797 3.9934 0.0022034 4.8415 0.0026713 551.751443312253 36.173 0.53828 31.98 31.664 32.202 -4.1928 62 32 3 0 0 0 8.7369 1 21102 21102 15.847 1.2655 1 26478000 + 75477 20147 50269 51372 88087 88087 -0.05470501619561219 WAVARPGRLQK 11 Unmodified _WAVARPGRLQK_ 0 0 0 REV__ENST00000607074.1_1_6:170581571-170582066:+|nuORF REV__ENST00000607074.1_1_6:170581571-170582066:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.9232788085938 3 427.922801 1280.74657 NaN NaN NaN NaN NaN NaN NaN 30.414 1 30.444 29.944 30.944 0.030106 0 0 0 0.94165 1 15901 15901 1.3296 0.92138 1 + 75478 29304 50270 51373 88088 88088 0.11742984919442279 WAVLRLALR 9 Unmodified _WAVLRLALR_ 0 0 0 ENSG00000131844|ENST00000340941|MCCC2;nc|ENSG00000131844|Q9HCC0-2|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 ENSG00000131844|ENST00000340941|MCCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3052368164062 2 549.350743 1096.68693 NaN NaN NaN NaN NaN NaN NaN 104.17 1 104.12 103.62 104.62 -0.048737 0 0 0 0.8622 1 57838 57838 0 0 1 75479 4355 50271 51374 88089 88089 0.14245713976038132 WAWLAVANWK 10 Unmodified _WAWLAVANWK_ 0 0 0 REV__ENST00000476110.1_1_22:41347402-41360184:+|nuORF REV__ENST00000476110.1_1_22:41347402-41360184:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.55810546875 3 415.557348 1243.65021 0.035167 1.4614E-05 1.2842 0.00053367 1.3194 0.00054829 415.55785327777824 28.383 0.30745 28.413 28.262 28.569 0.029564 40 12 5 0 0 0 0.70951 1 14851 14851 0.77653 0 1 45619000 + 75480 18058 50272 51375 88090 88090 0.038134173594926324 WCARWWLWFIW 11 Unmodified _WCARWWLWFIW_ 0 0 0 REV__ENSG00000268104|ENST00000598581|SLC6A14 REV__ENSG00000268104|ENST00000598581|SLC6A14 MSMS AL20221201_MKP_PDAC_01 4 826.9020385742188 2 826.902817 1651.79108 NaN NaN NaN NaN NaN NaN NaN 27.53 1 24.494 23.994 24.994 -3.0365 0 0 0 0.9435 1 15261 15261 0 0 1 + 75481 24617 50273 51376 88091 88091 -0.00874327258725316 WCCGFLNSF 9 Unmodified _WCCGFLNSF_ 0 0 0 nc|ENSG00000290684|A6NFC9|OR2W5P nc|ENSG00000290684|A6NFC9|OR2W5P nc|ENSG00000290684|A6NFC9|OR2W5P MSMS AL20221201_MKP_PDAC_01 4 538.7183227539062 2 538.720055 1075.42556 NaN NaN NaN NaN NaN NaN NaN 96.454 1 90.278 89.778 90.778 -6.1757 0 0 0 0.50124 1 63920 63920 15.847 0.078963 1 75482 16636 50274 51377 88092 88092 -0.10913776777488238 WCCHCCFGF 9 Unmodified _WCCHCCFGF_ 0 0 0 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 REV__chr2:95814145-95873038|37|10.38|0.25|5.36|-|1|TE_info:L1PA3,L1PA3_dup1071,L1,LINE,donor,+,95873038,95875690|LINC00342,None|22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.1217956542969 3 369.121883 1104.34382 NaN NaN NaN NaN NaN NaN NaN 52.335 1 52.276 51.776 52.776 -0.058918 0 0 0 0.8622 1 28350 28350 0 0 1 + 75483 16800 50275 51378 88093 88093 -0.20417918732596263 WCEGCETG 8 Unmodified _WCEGCETG_ 0 0 0 REV__ENSG00000185085|ENST00000330574|INTS5 REV__ENSG00000185085|ENST00000330574|INTS5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.6492614746094 2 442.649296 883.284039 -0.14176 -6.2751E-05 -1.2201 -0.00054007 -1.3618 -0.00060282 442.64874314888965 56.869 0.2527 56.384 56.226 56.479 -0.48554 25 11 3 0 0 0 0.80992 1 30858 30858 0.69038 0 1 2544900 + 75484 23469 50276 51379 88094 88094 -0.16227194870623407 WCEGCETG 8 Unmodified _WCEGCETG_ 0 0 0 REV__ENSG00000185085|ENST00000330574|INTS5 REV__ENSG00000185085|ENST00000330574|INTS5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 442.649296 883.284039 -0.14176 -6.2751E-05 -1.2201 -0.00054007 -1.3618 -0.00060282 442.64874314888965 56.869 0.2527 56.384 56.226 56.479 -0.48554 0 0 NaN 0.69038 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2544900 + 75485 23469 50276 51379 -0.16227194870623407 WCFEDDEDEDE 11 Unmodified _WCFEDDEDEDE_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.822998046875 3 477.822483 1430.44562 NaN NaN NaN NaN NaN NaN NaN 3.0514 1 3.0514 2.5514 3.5514 0 0 0 0 0.9435 1 1480 1480 0 0 1 75486 2843 50277 51380 88095 88095 -0.25238443885154993 WCFEDDEDEDE 11 Unmodified _WCFEDDEDEDE_ 0 0 0 nc|ENSG00000111880|O60942-4|RNGTT;nc|ENSG00000111880|O60942-2|RNGTT;ENSG00000111880|ENST00000369485|RNGTT;nc|ENSG00000111880|O60942-3|RNGTT nc|ENSG00000111880|O60942-4|RNGTT nc|ENSG00000111880|O60942-4|RNGTT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8223571777344 3 477.822483 1430.44562 NaN NaN NaN NaN NaN NaN NaN 8.9296 1 8.9472 8.4472 9.4472 0.017581 0 0 0 0.9435 1 4438 4438 0 0 1 75487 2843 50277 51380 88096 88096 -0.25238443885154993 WCHMPFFAKTV 11 Unmodified _WCHMPFFAKTV_ 0 0 0 ENSG00000137815|ENST00000389629|RTF1 ENSG00000137815|ENST00000389629|RTF1 ENSG00000137815|ENST00000389629|RTF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7841491699219 3 456.21935 1365.63622 0.19854 9.0579E-05 0.6499 0.0002965 0.84844 0.00038708 456.2196041433168 76.124 0.26129 75.645 75.526 75.787 -0.47945 18 10 2 0 0 0 0.30445 1 41609 41609 4.4062 1.5629 1 507830 75488 4973 50278 51381 88097 88097 -0.031973194554666406 WCHMPFFAKTV 11 Unmodified _WCHMPFFAKTV_ 0 0 0 ENSG00000137815|ENST00000389629|RTF1 ENSG00000137815|ENST00000389629|RTF1 ENSG00000137815|ENST00000389629|RTF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 456.21935 1365.63622 0.47945 0.00021873 0.2384 0.00010876 0.71785 0.0003275 456.2196028379133 75.596 0.25574 75.643 75.494 75.75 0.047951 -0.00062025 -0.00024316 NaN 4.4062 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1244100 75489 4973 50278 51381 -0.031973194554666406 WCILRNLN 8 Unmodified _WCILRNLN_ 0 0 0 REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF REV__ENST00000280969.9_1_5:162930392-162940570:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2756958007812 2 516.276386 1030.53822 NaN NaN NaN NaN NaN NaN NaN 17.972 1 17.978 17.478 18.478 0.0060463 0 0 0 0.97444 1 9089 9089 0.69038 0 1 + 75490 25193 50279 51382 88098 88098 0.024172400108909642 WCKGFWRYCL 10 Unmodified _WCKGFWRYCL_ 0 0 0 REV__ENST00000482672.1_1_1:161127020-161127131:+|nuORF REV__ENST00000482672.1_1_1:161127020-161127131:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.8806762695312 3 454.547578 1360.6209 -0.59455 -0.00027025 -1.9818 -0.00090084 -2.5764 -0.0011711 454.54666866732566 19.448 0.082737 19.476 19.424 19.506 0.028357 10 9 2 0 0 0 0.72196 1 9793 9793 0.15932 0.064481 1 342300 + 75491 27726 50280 51383 88099 88099 -0.04498186252635605 WCLGEANMYGI 11 Unmodified _WCLGEANMYGI_ 0 0 0 REV__ENST00000608013.1_1_2:96196137-96196317:+|nuORF REV__ENST00000608013.1_1_2:96196137-96196317:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5198364257812 3 419.519465 1255.53657 0.92882 0.00038966 0.17716 7.4322E-05 1.106 0.00046398 419.5194171579464 46.404 0.14451 46.37 46.307 46.452 -0.033421 12 6 2 0 0 0 0.72952 1 24989 24989 0.50596 0 1 1424900 + 75492 29322 50281 51384 88100 88100 -0.08098181860054865 WCLLLFLAI 9 Unmodified _WCLLLFLAI_ 0 0 0 REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF REV__ENST00000560131.1_1_15:63356108-63358095:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.321044921875 2 546.319731 1090.62491 NaN NaN NaN NaN NaN NaN NaN 103.51 1 103.4 102.9 103.9 -0.10458 0 0 0 0.85737 1 56459 56459 0.6015 0 1 + 75493 28823 50282 51385 88101 88101 0.08322226512723319 WCLVAHNG 8 Unmodified _WCLVAHNG_ 0 0 0 nc|ENSG00000213689|Q9NSU2-2|TREX1;ENSG00000213689|ENST00000625293|TREX1;nc|ENSG00000213689|Q9NSU2-1|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 nc|ENSG00000213689|Q9NSU2-2|TREX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.21240234375 2 450.213255 898.411957 NaN NaN NaN NaN NaN NaN NaN 18.06 1 18.074 17.574 18.574 0.013865 0 0 0 0.97444 1 9026 9026 0.79363 0 1 75494 10453 50283 51386 88102 88102 -0.04131266494414376 WCQAAQAG 8 Unmodified _WCQAAQAG_ 0 0 0 REV__ENSG00000215910|ENST00000688073|C1orf167 REV__ENSG00000215910|ENST00000688073|C1orf167 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.6814270019531 2 417.681788 833.349022 0.717 0.00029948 -1.082 -0.00045192 -0.36496 -0.00015244 417.68091252234933 74.467 0.39194 73.992 73.741 74.133 -0.47588 37 16 3 0 0 0 0.80975 1 40717 40717 0.79363 0 1 1238700 + 75495 24348 50284 51387 88103 88103 -0.07431832282463802 WCQGADWNY 9 Unmodified _WCQGADWNY_ 0 0 0 CD300LD|p.R52W|1|0.23|ENSG00000204345|chr17:74588736-74588736|G/A|missense_variant CD300LD|p.R52W|1|0.23|ENSG00000204345|chr17:74588736-74588736|G/A|missense_variant CD300LD|p.R52W|1|0.23|ENSG00000204345|chr17:74588736-74588736|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.4833068847656 3 381.48352 1141.42873 0.072984 2.7842E-05 -0.14529 -5.5428E-05 -0.072311 -2.7586E-05 381.48350113185546 63.447 0.41681 63.447 63.219 63.636 0 64 21 4 0 0 0 0.61256 1 35431 35431 0.26902 0 1 14541000 75496 52 50285 51388 88104 88104 -0.13632810399144546 WCRRQTRRRRW 11 Unmodified _WCRRQTRRRRW_ 0 0 0 REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4503784179688 2 830.452925 1658.8913 NaN NaN NaN NaN NaN NaN NaN 55.891 1 55.891 55.391 56.391 0 0 0 0 0.9435 1 31065 31065 0 0 1 + 75497 27161 50286 51389 88105 88105 0.08820722847622164 WCRRQTRRRRW 11 Unmodified _WCRRQTRRRRW_ 0 0 0 REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4509887695312 2 830.452925 1658.8913 NaN NaN NaN NaN NaN NaN NaN 72.774 1 72.774 72.274 73.274 0 0 0 0 0.9435 1 40520 40520 0 0 1 + 75498 27161 50286 51389 88106 88106 0.08820722847622164 WCSSYSPSP 9 Unmodified _WCSSYSPSP_ 0 0 0 REV__ENST00000547752.5_1_12:71054771-71054807:-|nuORF REV__ENST00000547752.5_1_12:71054771-71054807:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.2064819335938 2 507.205292 1012.39603 0.10616 5.3843E-05 1.1788 0.00059788 1.2849 0.00065172 507.20581818378275 24.742 0.45305 21.859 21.653 22.106 -2.8831 34 27 2 0 0 0 0.58865 1 13441 13441 2.0598 2.0598 1 5118300 + 75499 28677 50287 51390 88107 88107 -0.10967017521977596 WCVYFQSEGAL 11 Unmodified _WCVYFQSEGAL_ 0 0 0 ENST00000531346.1_1_11:120196007-120201221:+|nuORF;ENSG00000181264|ENST00000375095|TLCD5;nc|ENSG00000181264|Q6ZRR5-3|TLCD5 ENST00000531346.1_1_11:120196007-120201221:+|nuORF ENST00000531346.1_1_11:120196007-120201221:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 435.2194213867188 3 434.865629 1301.57506 1.1098 0.00048262 -0.506 -0.00022004 0.60382 0.00026258 435.2003536171224 83.461 0.68407 77.285 76.883 77.567 -6.1757 47 36 2 0 0 0 0.304 1 54834 54834 0.50596 0 1 8700200 75500 8960 50288 51391 88108 88108 -0.0636655295388664 WCWHCWLC 8 Unmodified _WCWHCWLC_ 0 0 0 REV__ENST00000533466.1_1_11:28116299-28119178:-|nuORF REV__ENST00000533466.1_1_11:28116299-28119178:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.3296508789062 2 568.716793 1135.41903 0.87886 0.00049982 1.777 0.0010106 2.6558 0.0015104 568.7171610722577 90.261 0.46402 84.085 83.826 84.29 -6.1757 62 26 4 0 0 0 8.7369 1 59560 59560 2.8892 0 1 22301000 + 75501 28481 50289 51392 88109 88109 -0.1432599320985446 WCWMPRKP 8 Unmodified _WCWMPRKP_ 0 0 0 REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2675170898438 2 552.267507 1102.52046 NaN NaN NaN NaN NaN NaN NaN 14.919 1 14.888 14.388 15.388 -0.030868 0 0 0 0.97444 1 7293 7293 0 0 1 + 75502 26303 50290 51393 88110 88110 -0.026697985156260984 WDARLAQME 9 Unmodified _WDARLAQME_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MSMS AL20221201_MKP_PDAC_01 4 560.2664184570312 2 560.266216 1118.51788 NaN NaN NaN NaN NaN NaN NaN 79.791 1 73.616 73.116 74.116 -6.1757 0 0 0 0.51965 1 52316 52316 15.248 0 1 + 75503 19763 50291 51394 88111 88111 -0.036639754395991986 WDCEFIRLHF 10 Unmodified _WDCEFIRLHF_ 0 0 0 ENSG00000115840|ENST00000422440|SLC25A12;nc|ENSG00000115840|O75746-2|SLC25A12 ENSG00000115840|ENST00000422440|SLC25A12 ENSG00000115840|ENST00000422440|SLC25A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.884521484375 3 455.885135 1364.63358 0.5044 0.00022995 -3.4775 -0.0015853 -2.9731 -0.0013554 455.88383257359675 29.135 0.18714 29.072 28.941 29.129 -0.062159 11 7 2 0 0 0 0.66229 1 15057 15057 7.1017 1.699 1 3471600 75504 3168 50292 51395 88112 88112 -0.03415451588762153 WDEELVQIYP 10 Unmodified _WDEELVQIYP_ 0 0 0 REV__ENST00000485975.1_1_9:139264538-139264880:-|nuORF REV__ENST00000485975.1_1_9:139264538-139264880:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8881225585938 3 431.211683 1290.61322 NaN NaN NaN NaN NaN NaN NaN 43.352 1 38.587 38.087 39.087 -4.7648 0 0 0 0.78298 1 26322 26322 7.9454 4.3583 1 + 75505 23664 50293 51396 88113 88113 -0.020463437675516616 WDFIHMIQVN 10 Unmodified _WDFIHMIQVN_ 0 0 0 ENST00000467390.5_1_2:138722061-138759907:+|nuORF ENST00000467390.5_1_2:138722061-138759907:+|nuORF ENST00000467390.5_1_2:138722061-138759907:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.8823852539062 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 6.1517 1 3.6697 3.1697 4.1697 -2.482 0 0 0 1.0024 1 3115 3115 0.13989 0.066628 1 75506 13779 50294 51397 88114 88114 -0.016068539630396117 WDGESSNLIQF 11 Unmodified _WDGESSNLIQF_ 0 0 0 REV__nc|ENSG00000010810|P06241-3|FYN REV__nc|ENSG00000010810|P06241-3|FYN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.5364379882812 3 432.534937 1294.58298 NaN NaN NaN NaN NaN NaN NaN 41.84 1 41.533 41.033 42.033 -0.30682 0 0 0 0.93669 1 22193 22193 2.2527 0 1 + 75507 17050 50295 51398 88115 88115 -0.05252702432744627 WDHRTPFD 8 Unmodified _WDHRTPFD_ 0 0 0 REV__nc|ENSG00000292343|Q02040-2|AKAP17A REV__nc|ENSG00000292343|Q02040-2|AKAP17A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 358.5112609863281 3 358.498157 1072.47264 -0.011687 -4.1899E-06 1.8657 0.00066885 1.854 0.00066466 358.83301149487767 65.32 0.30376 65.32 65.143 65.447 0 15 11 2 0 0 0 8.7369 1 36438 36438 1.4819 0 1 475650 + 75508 23976 50296 51399 88116 88116 -0.060694579104847435 WDIKKLTKK 9 Unmodified _WDIKKLTKK_ 0 0 0 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.3640747070312 2 580.363516 1158.71248 1.5724 0.00091254 -1.1522 -0.00066871 0.42014 0.00024383 580.362290603888 106.3 1.5278 100.13 99.666 101.19 -6.1757 523 259 3 0 0 0 0.61381 1 71318 71318 0.52476 0 1 10927000 75509 543 50297 51400 88117 88117 0.13947143707810028 WDKCDHDQMC 10 Unmodified _WDKCDHDQMC_ 0 0 0 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 REV__nc|ENSG00000004139|Q6SZW1-2|SARM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.4885864257812 3 427.487947 1279.44201 -0.44098 -0.00018851 1.1568 0.00049452 0.71583 0.00030601 427.4882478372533 30.8 0.20303 30.8 30.628 30.831 0 13 9 2 0 0 0 0.72497 1 16026 16026 0.12286 0.039514 1 1716400 + 75510 16943 50298 51401 88118 88118 -0.18653063673718862 WDKLKLFF 8 Unmodified _WDKLKLFF_ 0 0 0 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 ENSG00000134588|ENST00000511190|USP26 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 366.1912536621094 3 366.211177 1095.6117 1.7662 0.00064678 -1.2766 -0.00046749 0.48959 0.00017929 366.21087882977497 20.182 0.3696 17.523 17.33 17.699 -2.6592 52 25 3 0 0 0 8.7369 1 10625 10625 1.8442 0 1 9066900 75511 4623 50299 51402 88119 88119 0.06772111724990282 WDLVQKVYNYS 11 Unmodified _WDLVQKVYNYS_ 0 0 0 ENST00000322886.11_2_12:77417263-77417425:-|nuORF ENST00000322886.11_2_12:77417263-77417425:-|nuORF ENST00000322886.11_2_12:77417263-77417425:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.5744018554688 3 472.238232 1413.69287 0.95156 0.00044936 1.3286 0.0006274 2.2801 0.0010768 472.2387648854129 19.443 0.22094 16.786 16.689 16.91 -2.6564 45 23 3 0 0 0 0.67477 1 10264 10264 6.6235 2.2173 1 11158000 75512 11790 50300 51403 88120 88120 0.0025672290646525653 WDLVQRGF 8 Unmodified _WDLVQRGF_ 0 0 0 REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF REV__ENST00000475860.1_1_2:242038724-242041688:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7670593261719 2 510.766709 1019.51886 NaN NaN NaN NaN NaN NaN NaN 73.012 1 73.012 72.512 73.512 0 0 0 0 0.97444 1 40649 40649 2.8892 0 1 + 75513 19327 50301 51404 88121 88121 0.009886069916205997 WDNGYPWDMLL 11 Unmodified _WDNGYPWDMLL_ 0 0 0 ENSG00000007933|ENST00000367755|FMO3 ENSG00000007933|ENST00000367755|FMO3 ENSG00000007933|ENST00000367755|FMO3 MSMS AL20221201_MKP_PDAC_01 4 705.313232421875 2 705.313363 1408.61217 NaN NaN NaN NaN NaN NaN NaN 100.74 1 94.562 94.062 95.062 -6.1757 0 0 0 0.92234 1 67443 67443 6.2058 0 1 75514 371 50302 51405 88122 88122 -0.07578881408130655 WDNLLHWL 8 Unmodified _WDNLLHWL_ 0 0 0 nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1 nc|ENSG00000197057|Q6ZMT9-2|DTHD1 nc|ENSG00000197057|Q6ZMT9-2|DTHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7876586914062 2 548.782359 1095.55016 0.40617 0.0002229 0.5498 0.00030172 0.95596 0.00052461 549.2832340267954 75.312 0.78666 75.312 75.128 75.914 0 62 38 3 0 0 0 0.79783 3 41797 41797;42040;42177 7.9102 0 1 1020000 75515 9903 50303 51406 88123;88124;88125 88123 0.006211800257005962 WDNVPAEYK 9 Unmodified _WDNVPAEYK_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000519421.1_1_8:101015243-101020719:-|nuORF nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2672729492188 2 561.266739 1120.51892 0.088316 4.9569E-05 2.5353 0.001423 2.6237 0.0014726 561.2672208452414 45.298 0.19477 45.298 45.15 45.345 0 15 9 2 0 0 0 0.20428 1 24662 24662 22.736 3.4793 1 10465000 75516 4421 50304 51407 88126 88126 -0.036514377990670255 WDRHFYHSQF 10 Unmodified _WDRHFYHSQF_ 0 0 0 REV__ENST00000585803.1_1_18:57863810-57864818:+|nuORF REV__ENST00000585803.1_1_18:57863810-57864818:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 711.819091796875 2 711.820535 1421.62652 NaN NaN NaN NaN NaN NaN NaN 29.107 1 29.045 28.545 29.545 -0.062159 0 0 0 1.0029 1 15046 15046 0.35063 0 1 + 75517 29101 50305 51408 88127 88127 -0.06743048144971908 WDRWLFDYFFR 11 Unmodified _WDRWLFDYFFR_ 0 0 0 REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.9329223632812 3 550.933254 1649.77793 NaN NaN NaN NaN NaN NaN NaN 23.889 1 23.91 23.41 24.41 0.021185 0 0 0 0.9435 1 12312 12312 0 0 1 + 75518 21360 50306 51409 88128 88128 -0.020964868371265766 WDRWLFDYFFR 11 Unmodified _WDRWLFDYFFR_ 0 0 0 REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L MSMS AL20221201_MKP_PDAC_01 4 550.9345092773438 3 550.933254 1649.77793 NaN NaN NaN NaN NaN NaN NaN 57.164 1 51.145 50.645 51.645 -6.0189 0 0 0 0.94337 1 36546 36546 0.094841 0.011491 1 + 75519 21360 50306 51409 88129 88129 -0.020964868371265766 WDTETVPV 8 Unmodified _WDTETVPV_ 0 0 0 ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A ENSG00000133193|ENST00000405159|FAM104A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.7297973632812 2 473.729458 945.444362 -0.016434 -7.7854E-06 1.1678 0.00055321 1.1514 0.00054543 473.7298699159585 41.897 0.51798 41.897 41.607 42.125 0 43 26 2 0 0 0 0.65867 1 22706 22706 20.871 3.9289 1 4721300 75520 4497 50307 51410 88130 88130 -0.030542006104155917 WDTVGCVWDGF 11 Unmodified _WDTVGCVWDGF_ 0 0 0 ENSG00000054277|ENST00000366554|OPN3;nc|ENSG00000203668|Q9H1Y3-2|OPN3 ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.7736206054688 2 642.771331 1283.52811 0.45184 0.00029043 1.9535 0.0012557 2.4053 0.0015461 642.7726435666998 67.985 0.38417 67.503 67.275 67.659 -0.48218 30 17 2 0 0 0 0.68427 1 37113 37113 5.7319 2.4505 1 2562000 75521 757 50308 51411 88131 88131 -0.10231412505049775 WDVCVCLLF 9 Unmodified _WDVCVCLLF_ 0 0 0 REV__ENST00000394817.6_1_5:138282618-138282750:-|nuORF REV__ENST00000394817.6_1_5:138282618-138282750:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2611083984375 2 549.261556 1096.50856 NaN NaN NaN NaN NaN NaN NaN 84.096 1 84.096 83.596 84.596 0 0 0 0 0.82739 1 46628 46628 4.3292 0 1 + 75522 26456 50309 51412 88132 88132 -0.035834600495036284 WDVDELRF 8 Unmodified _WDVDELRF_ 0 0 0 REV__ENSG00000185522|ENST00000329451|LMNTD2 REV__ENSG00000185522|ENST00000329451|LMNTD2 MSMS AL20221201_MKP_PDAC_01 4 360.5115966796875 3 360.510063 1078.50836 NaN NaN NaN NaN NaN NaN NaN 29.678 1 26.377 25.877 26.877 -3.3016 0 0 0 0.92452 1 16706 16706 15.847 5.7733 1 + 75523 23507 50310 51413 88133 88133 -0.027754204534858218 WDVHWVLL 8 Unmodified _WDVHWVLL_ 0 0 0 REV__ENSG00000172869|ENST00000539542|DMXL1 REV__ENSG00000172869|ENST00000539542|DMXL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1067.729736328125 1 1067.56728 1066.56 0.42472 0.00045342 2.3576 0.0025169 2.7824 0.0029704 1067.5682241543009 49.302 0.30853 48.93 48.734 49.043 -0.37172 17 14 2 0 0 0 0.80992 1 26556 26556 0.69038 0.16561 1 1606400 + 75524 22681 50311 51414 88134 88134 0.029383680310729687 WDVSCDLL 8 Unmodified _WDVSCDLL_ 0 0 0 nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11 nc|ENSG00000072042|Q8TC12-3|RDH11 nc|ENSG00000072042|Q8TC12-3|RDH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7177734375 2 475.718036 949.421518 NaN NaN NaN NaN NaN NaN NaN 85.42 1 84.919 84.419 85.419 -0.5015 0 0 0 0.95201 1 46742 46742 10.183 0 1 75525 1068 50312 51415 88135 88135 -0.055215429995541854 WDWWHRRRRRT 11 Unmodified _WDWWHRRRRRT_ 0 0 0 ENST00000583780.1_2_17:18263786-18266854:-|nuORF ENST00000583780.1_2_17:18263786-18266854:-|nuORF ENST00000583780.1_2_17:18263786-18266854:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.9688720703125 3 570.969807 1709.88759 -0.49536 -0.00028284 -0.98615 -0.00056306 -1.4815 -0.0008459 570.969123558301 28.246 0.16255 28.246 28.149 28.311 0 16 7 3 0 0 0 0.74429 1 14593 14593 0.094841 0.094841 1 1383600 75526 15591 50313 51416 88136 88136 0.06104376345410856 WEASELDA 8 Unmodified _WEASELDA_ 0 0 0 REV__ENSG00000053328|ENST00000338882|METTL24 REV__ENSG00000053328|ENST00000338882|METTL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 923.4111938476562 1 920.399603 919.392327 0.38908 0.0003581 0.28362 0.00026105 0.6727 0.00061915 920.3997211024772 43.977 0.55211 39.212 38.919 39.471 -4.7648 109 35 4 0 0 0 0.63229 1 26714 26714 23.148 2.6948 1 153570000 + 75527 17275 50314 51417 88137 88137 -0.07059364024189563 WEDDAWSYD 9 Unmodified _WEDDAWSYD_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.149658203125 3 396.148971 1185.42508 0.5617 0.00022252 0.41833 0.00016572 0.98003 0.00038824 396.14907002567725 71.765 0.31978 71.289 71.121 71.441 -0.47609 19 12 2 0 0 0 0.61256 1 39279 39279 0.26902 0 1 679030 75528 5021 50315 51418 88138 88138 -0.1602120169200134 WEDYRHSWREF 11 Unmodified _WEDYRHSWREF_ 0 0 0 REV__ENSG00000129292|ENST00000395386|PHF20L1;REV__ENST00000361997.9_1_8:133790074-133829825:+|nuORF;REV__ENST00000395383.5_1_8:133790074-133836319:+|nuORF REV__ENST00000395383.5_1_8:133790074-133836319:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.8606567382812 2 805.860389 1609.70622 NaN NaN NaN NaN NaN NaN NaN 80.451 1 79.959 79.459 80.459 -0.49247 0 0 0 0.9435 1 44058 44058 0 0 1 + 75529 19659;25951;26477 50316 51419 88139 88139 -0.07424026261651306 WEECRDCCI 9 Unmodified _WEECRDCCI_ 0 0 0 REV__ENSG00000101191|ENST00000395343|DIDO1;REV__nc|ENSG00000101191|Q9BTC0-3|DIDO1 REV__ENSG00000101191|ENST00000395343|DIDO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.481201171875 3 386.145522 1155.41474 0.70892 0.00027375 3.3521 0.0012944 4.0611 0.0015682 386.48091401575516 73.758 0.43866 73.282 73.066 73.504 -0.47588 33 20 2 0 0 0 0.61256 1 40474 40474 0.26902 0 1 1218000 + 75530 18143;29538 50317 51420 88140 88140 -0.1567554721407305 WEEETQCLL 9 Unmodified _WEEETQCLL_ 0 0 0 REV__nc|ENSG00000099954|Q9BXF3|CECR2 REV__nc|ENSG00000099954|Q9BXF3|CECR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7523193359375 2 575.757889 1149.50123 NaN NaN NaN NaN NaN NaN NaN 55.536 1 55.058 54.558 55.558 -0.47798 0 0 0 0.82396 1 30128 30128 4.756 1.8668 1 + 75531 17994 50318 51421 88141 88141 -0.06754521116226897 WEEKEIKL 8 Unmodified _WEEKEIKL_ 0 0 0 REV__ENSG00000122477|ENST00000370137|LRRC39 REV__ENSG00000122477|ENST00000370137|LRRC39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.794921875 2 537.795132 1073.57571 0.2585 0.00013902 -0.1686 -9.067E-05 0.089907 4.8352E-05 537.7949639514852 83.074 0.8775 83.074 82.506 83.383 0 117 44 4 0 0 0 0.80763 1 45909 45909 2.0598 0 1 12289000 + 75532 19344 50319 51422 88142 88142 0.04186609757448423 WEEKEIKL 8 Unmodified _WEEKEIKL_ 0 0 0 REV__ENSG00000122477|ENST00000370137|LRRC39 REV__ENSG00000122477|ENST00000370137|LRRC39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7954711914062 2 537.795132 1073.57571 0.40621 0.00021846 0.27437 0.00014756 0.68058 0.00036601 537.7951987075315 83.627 0.82308 83.13 82.642 83.466 -0.49751 101 33 5 0 0 0 0.80311 1 45621 45621 4.756 0 1 30409000 + 75533 19344 50319 51422 88143 88143 0.04186609757448423 WEELTQNFL 9 Unmodified _WEELTQNFL_ 0 0 0 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2874755859375 2 590.287671 1178.56079 0.19086 0.00011266 -0.3918 -0.00023127 -0.20094 -0.00011861 590.2875005914505 69.038 0.33905 69.038 68.864 69.203 0 32 14 3 0 0 0 0.34134 1 38432 38432 15.847 15.847 1 2539100 + 75534 18981 50320 51423 88144 88144 -0.02134882110522085 WEELTQNFL 9 Unmodified _WEELTQNFL_ 0 0 0 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2881469726562 2 590.287671 1178.56079 -0.049209 -2.9047E-05 0.75114 0.00044339 0.70193 0.00041434 590.288163749309 69.466 0.43326 68.987 68.79 69.223 -0.47903 58 18 5 0 0 0 0.11784 2 38026 37927;38026 34.102 34.102 1 20869000 + 75535 18981 50320 51423 88145;88146 88146 -0.02134882110522085 WEETRQVY 8 Unmodified _WEETRQVY_ 0 0 0 SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.764892578125 2 555.764363 1109.51417 -0.08423 -4.6812E-05 -0.16416 -9.1237E-05 -0.24839 -0.00013805 555.7642791868345 34.781 0.28981 34.59 34.477 34.767 -0.19132 23 12 3 0 0 0 0.61462 1 18187 18187 24.674 1.9376 1 3674300 75536 30179 50321 51424 88147 88147 -0.036203219417984656 WEETRQVY 8 Unmodified _WEETRQVY_ 0 0 0 SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 555.764363 1109.51417 -0.20177 -0.00011213 -0.29313 -0.00016291 -0.49489 -0.00027504 555.7645925872698 34.633 0.33088 34.633 34.422 34.753 0 0.022222 4.1736E-05 NaN 24.674 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 8742300 75537 30179 50321 51424 -0.036203219417984656 WEETRQVY 8 Unmodified _WEETRQVY_ 0 0 0 SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant SYCP1|p.R204W|1|0.08|ENSG00000198765|chr1:114874517-114874517|C/T|missense_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 555.764363 1109.51417 0.28533 0.00015858 -0.60255 -0.00033488 -0.31722 -0.0001763 555.7641590099482 34.582 0.10856 34.609 34.54 34.648 0.027401 -0.0012174 -0.0003022 NaN 24.674 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 538590 75538 30179 50321 51424 -0.036203219417984656 WEFNMGCDK 9 Unmodified _WEFNMGCDK_ 0 0 0 REV__ENSG00000146221|ENST00000371505|TCTE1 REV__ENSG00000146221|ENST00000371505|TCTE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2244262695312 2 565.225702 1128.43685 -0.35816 -0.00020244 -0.029768 -1.6826E-05 -0.38793 -0.00021927 565.2251646288028 34.705 0.23298 34.705 34.56 34.793 0 18 11 2 0 0 0 0.23158 1 18308 18308 20.454 3.3407 1 3722200 + 75539 20818 50322 51425 88148 88148 -0.12222999474010976 WEGLVFVHL 9 Unmodified _WEGLVFVHL_ 0 0 0 REV__nc|ENSG00000134824|O95864-4|FADS2 REV__nc|ENSG00000134824|O95864-4|FADS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4982299804688 3 367.202682 1098.58622 -0.49355 -0.00018123 -0.90271 -0.00033148 -1.3963 -0.00051271 367.20217059483576 35.088 0.34601 35.088 34.939 35.285 0 35 17 3 0 0 0 0.21806 1 18463 18463 2.7352 0.23671 1 2975900 + 75540 20015 50323 51426 88149 88149 0.040866372025675446 WEGMQDARF 9 Unmodified _WEGMQDARF_ 0 0 0 REV__ENST00000479447.1_1_7:37469105-37469273:-|nuORF REV__ENST00000479447.1_1_7:37469105-37469273:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5027770996094 3 380.502803 1138.48658 -0.04797 -1.8253E-05 0.53121 0.00020213 0.48324 0.00018388 380.502961665435 35.292 0.27198 35.319 35.186 35.458 0.027401 27 12 3 0 0 0 0.55144 1 18629 18629 2.4985 0 1 18608000 + 75541 27657 50324 51427 88150 88150 -0.07712548473705283 WEGMQDARF 9 Unmodified _WEGMQDARF_ 0 0 0 REV__ENST00000479447.1_1_7:37469105-37469273:-|nuORF REV__ENST00000479447.1_1_7:37469105-37469273:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5038452148438 3 380.502803 1138.48658 0.75171 0.00028603 -0.59611 -0.00022682 0.15559 5.9203E-05 380.5030905158454 39.974 0.84419 35.444 35.029 35.873 -4.5294 174 64 4 0 0 0 0.49272 1 24004 24004 4.897 4.897 1 181310000 + 75542 27657 50324 51427 88151 88151 -0.07712548473705283 WEGTIWVY 8 Unmodified _WEGTIWVY_ 0 0 0 REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF REV__ENST00000482490.5_1_3:64536549-64672246:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.2545166015625 2 527.255643 1052.49673 NaN NaN NaN NaN NaN NaN NaN 46.701 1 41.62 41.12 42.12 -5.0805 0 0 0 0.63034 1 28900 28900 32.117 6.7177 1 + 75543 21795 50325 51428 88152 88152 -0.02741617476817737 WEHAEELF 8 Unmodified _WEHAEELF_ 0 0 0 REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 354.1622314453125 3 354.162663 1059.46616 NaN NaN NaN NaN NaN NaN NaN 75.266 1 74.789 74.289 75.289 -0.47714 0 0 0 0.97444 1 41199 41199 0.40072 0 1 + 75544 20415 50326 51429 88153 88153 -0.06119395861878729 WEHLFYWKLRF 11 Unmodified _WEHLFYWKLRF_ 0 0 0 nc|ENSG00000183454|Q12879-2|GRIN2A;ENSG00000183454|ENST00000330684|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A nc|ENSG00000183454|Q12879-2|GRIN2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 812.9244995117188 2 812.924803 1623.83505 NaN NaN NaN NaN NaN NaN NaN 89.27 1 88.766 88.266 89.266 -0.50382 0 0 0 0.9435 1 48810 48810 0 0 1 75545 9151 50327 51430 88154 88154 0.048089804392475344 WEHRDVHNIY 10 Unmodified _WEHRDVHNIY_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.8865661621094 3 456.886304 1367.63708 0.34673 0.00015841 -0.21137 -9.6574E-05 0.13535 6.1841E-05 456.8864462786964 33.698 0.1908 33.727 33.625 33.816 0.028934 12 7 2 0 0 0 0.70951 1 17753 17753 0.77653 0 1 1276400 75546 16072 50328 51431 88155 88155 -0.03203065490515655 WEHRDVHNIY 10 Unmodified _WEHRDVHNIY_ 0 0 0 nc|ENSG00000089597|Q14697-2|GANAB;ENSG00000089597|ENST00000356638|GANAB nc|ENSG00000089597|Q14697-2|GANAB nc|ENSG00000089597|Q14697-2|GANAB MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 456.886304 1367.63708 -0.3701 -0.00016909 0.87932 0.00040175 0.50923 0.00023266 456.8869093305691 33.971 0.27252 33.78 33.617 33.89 -0.19131 0.026321 0.00056757 NaN 0.77653 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2273500 75547 16072 50328 51431 -0.03203065490515655 WEHWWRMERLA 11 Unmodified _WEHWWRMERLA_ 0 0 0 ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF ENST00000398117.1_1_18:60791148-60791340:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 800.3859252929688 2 800.385519 1598.75649 NaN NaN NaN NaN NaN NaN NaN 62.646 1 62.646 62.146 63.146 0 0 0 0 0.9435 1 34945 34945 0 0 1 75548 12842 50329 51432 88156 88156 -0.018941951374699784 WEKREMENMMK 11 Unmodified _WEKREMENMMK_ 0 0 0 REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91 REV__nc|ENSG00000183833|Q7Z4T9-1|CFAP91 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 756.3431396484375 2 756.343814 1510.67308 NaN NaN NaN NaN NaN NaN NaN 70.592 1 70.115 69.615 70.615 -0.47735 0 0 0 0.88164 1 38621 38621 8.1555 0.54658 1 + 75549 23380 50330 51433 88157 88157 -0.06183435691878003 WEKVWDNWRLL 11 Unmodified _WEKVWDNWRLL_ 0 0 0 ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES ENSG00000183624|ENST00000383463|HMCES MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.9063110351562 2 772.904068 1543.79358 -0.088648 -6.8516E-05 2.0299 0.0015689 1.9413 0.0015004 772.906115409561 68.956 0.20428 68.475 68.399 68.604 -0.48071 12 8 2 0 0 0 0.74429 1 37694 37694 0.35063 0.35063 1 1096300 75550 9169 50331 51434 88158 88158 0.043437996799184475 WELGKIQLSLH 11 Unmodified _WELGKIQLSLH_ 0 0 0 REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF REV__ENST00000592604.5_1_19:11123597-11172489:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.3738403320312 2 662.374612 1322.73467 -0.0015736 -1.0423E-06 -0.98688 -0.00065369 -0.98846 -0.00065473 662.373875426553 65.746 0.61241 59.57 59.285 59.898 -6.1757 95 35 3 0 0 0 0.631 2 42732 42732;42882 8.1555 0 1 66475000 + 75551 29179 50332 51435 88159;88160 88159 0.08621323385614232 WELHNKHLF 9 Unmodified _WELHNKHLF_ 0 0 0 ENSG00000125386|ENST00000637812|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312|FAM193A ENSG00000125386|ENST00000637812|FAM193A ENSG00000125386|ENST00000637812|FAM193A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5473022460938 3 408.548852 1222.62473 NaN NaN NaN NaN NaN NaN NaN 53.6 1 53.536 53.036 54.036 -0.063423 0 0 0 0.82396 1 29081 29081 2.7352 1.2801 1 75552 3845 50333 51436 88161 88161 0.022319428370792593 WELQIYPGF 9 Unmodified _WELQIYPGF_ 0 0 0 ENST00000238497.9_1_18:61064415-61066538:-|nuORF ENST00000238497.9_1_18:61064415-61066538:-|nuORF ENST00000238497.9_1_18:61064415-61066538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.7900390625 2 576.78985 1151.56515 0.33969 0.00019593 -0.07205 -4.1558E-05 0.26764 0.00015437 576.7899204423329 76.922 0.37389 76.972 76.8 77.173 0.05011 35 15 3 0 0 0 0.2143 2 42417 42417;42528 21.747 1.9411 1 6663400 75553 11096 50334 51437 88162;88163 88162 -0.0045737289697171946 WELSHINF 8 Unmodified _WELSHINF_ 0 0 0 REV__ENSG00000196475|ENST00000358842|GK2 REV__ENSG00000196475|ENST00000358842|GK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2584228515625 2 523.258717 1044.50288 NaN NaN NaN NaN NaN NaN NaN 13.976 1 13.976 13.476 14.476 0 0 0 0 0.97444 1 6619 6619 0.69038 0 1 + 75554 23832 50335 51438 88164 88164 -0.017590992453051513 WEMWKSQEA 9 Unmodified _WEMWKSQEA_ 0 0 0 ENST00000517402.1_1_7:27221420-27221732:-|nuORF ENST00000517402.1_1_7:27221420-27221732:-|nuORF ENST00000517402.1_1_7:27221420-27221732:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7666015625 2 597.766049 1193.51754 0.42196 0.00025223 0.11787 7.046E-05 0.53983 0.00032269 597.7666085365456 97.195 0.2485 96.952 96.796 97.045 -0.24277 16 10 2 0 0 0 0.61381 1 53065 53065 0.52476 0 1 314540 75555 14674 50336 51439 88165 88165 -0.07147395159427106 WENHSSDSHF 10 Unmodified _WENHSSDSHF_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.2483520507812 2 623.249609 1244.48466 0.42424 0.00026441 0.014909 9.2923E-06 0.43915 0.0002737 623.2498104756115 71.234 0.24777 70.757 70.568 70.816 -0.47735 16 10 2 0 0 0 0.69064 1 39006 39006 3.9444 0 1 1045300 + 75556 17558 50337 51440 88166 88166 -0.1277988595795705 WENHSSDSHF 10 Unmodified _WENHSSDSHF_ 0 0 0 REV__ENSG00000074755|ENST00000381638|ZZEF1 REV__ENSG00000074755|ENST00000381638|ZZEF1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 623.249609 1244.48466 0.42424 0.00026441 0.014909 9.2923E-06 0.43915 0.0002737 623.2498104756115 71.234 0.24777 70.757 70.568 70.816 -0.47735 0.053329 -0.0015224 NaN 3.9444 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1045300 + 75557 17558 50337 51440 -0.1277988595795705 WENVTERY 8 Unmodified _WENVTERY_ 0 0 0 ENST00000541573.5_1_6:160103527-160113001:-|nuORF;ENST00000535459.5_1_6:160103527-160109299:-|nuORF;nc|ENSG00000291237|P04179-3|SOD2;nc|ENSG00000291237|P04179-4|SOD2;nc|ENSG00000291237|P04179-2|SOD2;ENST00000546260.5_1_6:160103527-160113680:-|nuORF;nc|ENSG00000291237|P04179|SOD2 ENST00000541573.5_1_6:160103527-160113001:-|nuORF ENST00000541573.5_1_6:160103527-160113001:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7573852539062 2 548.756538 1095.49852 0.67252 0.00036905 -0.37872 -0.00020782 0.2938 0.00016123 548.7558991315639 45.661 0.38969 40.706 40.504 40.894 -4.9549 39 25 2 0 0 0 0.76266 1 27972 27972 11.64 3.047 1 26060000 75558 14970 50338 51441 88167 88167 -0.04540608458864881 WEPPPWREFH 10 Unmodified _WEPPPWREFH_ 0 0 0 ENST00000433445.1_1_2:201981775-201994502:+|nuORF ENST00000433445.1_1_2:201981775-201994502:+|nuORF ENST00000433445.1_1_2:201981775-201994502:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.8871154785156 3 460.887645 1379.64111 0.48494 0.0002235 -0.48588 -0.00022393 -0.00093717 -4.3193E-07 460.8875252613356 65.193 0.33324 65.193 65.013 65.347 0 39 13 4 0 0 0 0.70895 1 36327 36327 1.9064 0.1641 1 5405100 75559 13287 50339 51442 88168 88168 -0.03352975996835994 WEPVGKTYFF 10 Unmodified _WEPVGKTYFF_ 0 0 0 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 ENSG00000125966|ENST00000246186|MMP24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.316162109375 2 637.316232 1272.61791 NaN NaN NaN NaN NaN NaN NaN 101.34 1 101.3 100.8 101.8 -0.04216 0 0 0 0.98914 1 56300 56300 1.8442 0 1 75560 3914 50340 51443 88169 88169 -0.007494148341493201 WEQDHRMMF 9 Unmodified _WEQDHRMMF_ 0 0 0 ENST00000416709.1_1_6:168687664-168688738:-|nuORF;ENST00000451540.1_1_13:75812162-75812900:-|nuORF ENST00000416709.1_1_6:168687664-168688738:-|nuORF ENST00000416709.1_1_6:168687664-168688738:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.1820678710938 3 427.183076 1278.5274 0.29701 0.00012688 -1.744 -0.00074502 -1.447 -0.00061815 427.18220551737653 75.05 0.44742 75.096 74.961 75.409 0.045967 96 21 6 0 0 0 0.55144 2 41372 41372;41489 2.4985 1.9925 1 32877000 75561 13054 50341 51444 88170;88171 88170 -0.10072530425736659 WEQQLKDWES 10 Unmodified _WEQQLKDWES_ 0 0 0 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 REV__nc|ENSG00000115423|Q9C0G6-4|DNAH6 MSMS AL20221201_MKP_PDAC_01 4 674.8135375976562 2 674.812042 1347.60953 NaN NaN NaN NaN NaN NaN NaN 97.242 1 91.066 90.566 91.566 -6.1757 0 0 0 0.47175 1 64447 64447 27.629 2.6378 1 + 75562 18981 50342 51445 88172 88172 -0.050370135413913886 WEQSYPMGTEE 11 Unmodified _WEQSYPMGTEE_ 0 0 0 REV__ENST00000463101.1_1_22:24579934-24582448:+|nuORF REV__ENST00000463101.1_1_22:24579934-24582448:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.8506469726562 3 452.851937 1355.53398 NaN NaN NaN NaN NaN NaN NaN 17.301 1 17.314 16.814 17.814 0.013865 0 0 0 0.94293 1 8591 8591 0.40827 0.13925 1 + 75563 17998 50343 51446 88173 88173 -0.1295635878398116 WEREVKQLQ 9 Unmodified _WEREVKQLQ_ 0 0 0 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 ENSG00000147684|ENST00000276689|NDUFB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8887634277344 3 405.887533 1214.64077 -0.068852 -2.7946E-05 1.2583 0.00051072 1.1894 0.00048277 405.8880844953828 22.189 0.16888 22.203 22.109 22.278 0.013796 12 6 2 0 0 0 0.61381 1 11419 11419 0.23584 0 1 668440 75564 5877 50344 51447 88174 88174 0.04203604283338791 WEREWTEL 8 Unmodified _WEREWTEL_ 0 0 0 nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A nc|ENSG00000169918|Q8TE49|OTUD7A nc|ENSG00000169918|Q8TE49|OTUD7A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.77294921875 2 574.772188 1147.52982 NaN NaN NaN NaN NaN NaN NaN 91.62 1 91.139 90.639 91.639 -0.48092 0 0 0 0.97348 1 50078 50078 5.7604 1.0044 1 75565 7928 50345 51448 88175 88175 -0.03804035424786889 WERGYQYVNN 10 Unmodified _WERGYQYVNN_ 0 0 0 REV__nc|ENSG00000106771|Q9H330-3|TMEM245 REV__nc|ENSG00000106771|Q9H330-3|TMEM245 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.5383911132812 3 443.538793 1327.59455 -0.28203 -0.00012509 2.0621 0.00091463 1.7801 0.00078954 443.539546333839 18.521 0.15417 18.521 18.417 18.571 0 28 17 2 0 0 0 0.72247 1 9190 9190 0.13989 0.04505 1 967740 + 75566 18533 50346 51449 88176 88176 -0.05614460618767225 WERIPELVK 9 Unmodified _WERIPELVK_ 0 0 0 ENSG00000165914|ENST00000328459|TTC7B;nc|ENSG00000165914|Q86TV6-2|TTC7B ENSG00000165914|ENST00000328459|TTC7B ENSG00000165914|ENST00000328459|TTC7B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.7724609375 2 585.337498 1168.66044 NaN NaN NaN NaN NaN NaN NaN 102.36 1 102.31 101.81 102.81 -0.045853 0 0 0 0.85029 1 56855 56855 1.4819 0 1 75567 7405 50347 51450 88177 88177 0.08285980294044748 WERMRRLRDRR 11 Unmodified _WERMRRLRDRR_ 0 0 0 REV__ENSG00000106484|ENST00000223215|MEST REV__ENSG00000106484|ENST00000223215|MEST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 815.4526977539062 2 815.452591 1628.89063 NaN NaN NaN NaN NaN NaN NaN 67.865 1 67.383 66.883 67.883 -0.48218 0 0 0 0.9435 1 37081 37081 0 0 1 + 75568 18513 50348 51451 88178 88178 0.10133883407934263 WERMRRLRDRR 11 Unmodified _WERMRRLRDRR_ 0 0 0 REV__ENSG00000106484|ENST00000223215|MEST REV__ENSG00000106484|ENST00000223215|MEST MSMS AL20221201_MKP_PDAC_01 4 815.4522094726562 2 815.452591 1628.89063 NaN NaN NaN NaN NaN NaN NaN 63.197 1 57.021 56.521 57.521 -6.1757 0 0 0 0.9435 1 40826 40826 0 0 1 + 75569 18513 50348 51451 88179 88179 0.10133883407934263 WESASGIVE 9 Unmodified _WESASGIVE_ 0 0 0 ENSG00000132693|ENST00000255030|CRP ENSG00000132693|ENST00000255030|CRP ENSG00000132693|ENST00000255030|CRP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 977.4588623046875 1 977.457453 976.450176 0.2082 0.00020351 -0.29274 -0.00028614 -0.084535 -8.2629E-05 977.4567741387752 58.099 0.20858 57.609 57.471 57.68 -0.48974 16 9 2 0 0 0 0.32871 1 31548 31548 15.847 2.3393 1 2118400 75570 4440 50349 51452 88180 88180 -0.03899102098750973 WESASGIVE 9 Unmodified _WESASGIVE_ 0 0 0 ENSG00000132693|ENST00000255030|CRP ENSG00000132693|ENST00000255030|CRP ENSG00000132693|ENST00000255030|CRP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 977.457453 976.450176 0.44727 0.00043719 0.41932 0.00040986 0.86659 0.00084705 977.4572733674526 57.52 0.2081 57.52 57.324 57.532 0 -0.044507 0.00050374 NaN 15.847 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 2877200 75571 4440 50349 51452 -0.03899102098750973 WESHCFCCGF 10 Unmodified _WESHCFCCGF_ 0 0 0 ENST00000330342.7_1_12:124233270-124235768:+|nuORF ENST00000330342.7_1_12:124233270-124235768:+|nuORF ENST00000330342.7_1_12:124233270-124235768:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.7115478515625 2 609.711904 1217.40926 0.12656 7.7163E-05 -0.066613 -4.0615E-05 0.059944 3.6548E-05 609.7115504794417 66.144 0.18078 65.66 65.521 65.701 -0.48323 10 8 2 0 0 0 0.70951 1 36114 36114 1.8442 0 1 2924300 75572 11848 50350 51453 88181 88181 -0.19075226005907098 WESPGGRV 8 Unmodified _WESPGGRV_ 0 0 0 ENST00000524189.5_1_8:28925998-28926520:-|nuORF ENST00000524189.5_1_8:28925998-28926520:-|nuORF ENST00000524189.5_1_8:28925998-28926520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2222900390625 2 444.222134 886.429715 1.1586 0.00051467 1.2931 0.00057444 2.4517 0.0010891 444.2225951424965 50.645 0.26036 50.591 50.428 50.688 -0.053875 31 12 3 0 0 0 0.80676 1 27355 27355 2.5775 0 1 7321500 75573 14772 50351 51454 88182 88182 -0.018042279678979867 WESPGGRV 8 Unmodified _WESPGGRV_ 0 0 0 ENST00000524189.5_1_8:28925998-28926520:-|nuORF ENST00000524189.5_1_8:28925998-28926520:-|nuORF ENST00000524189.5_1_8:28925998-28926520:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2227783203125 2 444.222134 886.429715 0.80701 0.00035849 0.93328 0.00041459 1.7403 0.00077308 444.22239511368196 50.836 0.29445 50.782 50.669 50.963 -0.053871 35 14 3 0 0 0 0.80676 1 27456 27456 2.5775 0 1 7234300 75574 14772 50351 51454 88183 88183 -0.018042279678979867 WETFRRWHRKR 11 Unmodified _WETFRRWHRKR_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 829.4502563476562 2 829.450374 1656.8862 NaN NaN NaN NaN NaN NaN NaN 53.795 1 53.795 53.295 54.295 0 0 0 0 0.94337 1 29837 29837 0 0 1 75575 13051 50352 51455 88184 88184 0.08402742256657802 WETFRRWHRKR 11 Unmodified _WETFRRWHRKR_ 0 0 0 ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF ENST00000416673.6_1_2:114369763-114384446:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 829.4492797851562 2 829.450374 1656.8862 NaN NaN NaN NaN NaN NaN NaN 107.81 1 107.76 107.26 108.26 -0.047607 0 0 0 0.9435 1 59722 59722 0 0 1 75576 13051 50352 51455 88185 88185 0.08402742256657802 WETGVPRG 8 Unmodified _WETGVPRG_ 0 0 0 REV__ENST00000543287.5_1_11:118919950-118926831:-|nuORF REV__ENST00000543287.5_1_11:118919950-118926831:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2313842773438 2 451.229959 900.445365 0.51793 0.00023371 0.70651 0.0003188 1.2244 0.0005525 451.2302637871429 59.264 0.54581 59.264 58.877 59.423 0 40 23 3 0 0 0 0.80676 1 32962 32962 2.5775 0 1 4416800 + 75577 28632 50353 51456 88186 88186 -0.008839414508543086 WETTHFLAF 9 Unmodified _WETTHFLAF_ 0 0 0 ENST00000574081.5_2_17:5113523-5113853:-|nuORF ENST00000574081.5_2_17:5113523-5113853:-|nuORF ENST00000574081.5_2_17:5113523-5113853:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.2797241210938 2 576.279649 1150.54475 NaN NaN NaN NaN NaN NaN NaN 101.66 1 101.61 101.11 102.11 -0.045853 0 0 0 0.84369 1 56478 56478 2.3027 0 1 75578 15505 50354 51457 88187 88187 -0.024505435567562017 WETTVLLL 8 Unmodified _WETTVLLL_ 0 0 0 ENST00000345094.7_1_3:9404786-9406727:+|nuORF ENST00000345094.7_1_3:9404786-9406727:+|nuORF ENST00000345094.7_1_3:9404786-9406727:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 974.5552368164062 1 974.55571 973.548434 0.26414 0.00025742 1.5871 0.0015467 1.8513 0.0018042 974.5575245283438 97.463 0.39274 97.221 96.979 97.371 -0.24277 45 17 4 0 0 0 0.5953 1 53149 53149 26.341 0 1 17011000 75579 12024 50355 51458 88188 88188 0.06060126217107609 WEVEAAVSY 9 Unmodified _WEVEAAVSY_ 0 0 0 AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7511596679688 2 527.248015 1052.48148 -0.10909 -5.7518E-05 0.31043 0.00016367 0.20134 0.00010616 527.2483672958707 41.513 0.2023 41.513 41.404 41.607 0 23 10 3 0 0 0 0.06187 1 22402 22402 42.095 2.1372 1 16979000 75580 17 50356 51459 88189 88189 -0.042665290646709764 WEVEAAVSY 9 Unmodified _WEVEAAVSY_ 0 0 0 AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense AluJb_dup92890|chr14:64941062-64941363:-|1.8345099148935005|0.2068277339241644|3.15|179.0|13|3|sense MSMS AL20221201_MKP_PDAC_01 4 527.2476806640625 2 527.248015 1052.48148 NaN NaN NaN NaN NaN NaN NaN 46.765 1 41.684 41.184 42.184 -5.0805 0 0 0 0.050352 1 28950 28950 57.471 11.45 1 75581 17 50356 51459 88190 88190 -0.042665290646709764 WEVGWLHE 8 Unmodified _WEVGWLHE_ 0 0 0 nc|ENSG00000183960|Q96L42-2|KCNH8;ENST00000452398.5_1_3:19388190-19491848:+|nuORF;ENSG00000183960|ENST00000328405|KCNH8 nc|ENSG00000183960|Q96L42-2|KCNH8 nc|ENSG00000183960|Q96L42-2|KCNH8 MSMS AL20221201_MKP_PDAC_01 4 528.25048828125 2 528.250892 1054.48723 NaN NaN NaN NaN NaN NaN NaN 46.835 1 41.755 41.255 42.255 -5.0805 0 0 0 0.90769 1 28999 28999 18.135 3.2967 1 75582 9212 50357 51460 88191 88191 -0.03783385762312719 WEVKIMSLF 9 Unmodified _WEVKIMSLF_ 0 0 0 REV__ENST00000550184.5_1_12:56553243-56553312:+|nuORF REV__ENST00000550184.5_1_12:56553243-56553312:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8086547851562 2 576.809728 1151.6049 NaN NaN NaN NaN NaN NaN NaN 101 1 100.95 100.45 101.45 -0.04216 0 0 0 0.84369 1 56108 56108 2.3027 0 1 + 75583 28700 50358 51461 88192 88192 0.03516430782110547 WEVVERILFIY 11 Unmodified _WEVVERILFIY_ 0 0 0 ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13 ENSG00000107021|ENST00000372648|TBC1D13 ENSG00000107021|ENST00000372648|TBC1D13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 367.4577026367188 4 367.456511 1465.79694 0.39176 0.00014396 0.77182 0.00028361 1.1636 0.00042757 367.4566872688654 47.995 0.46201 47.956 47.722 48.184 -0.038643 58 22 3 0 0 0 0.73114 1 25790 25790 1.3296 0.11481 1 33783000 75584 2471 50359 51462 88193 88193 0.08267049733967724 WEWRQCQWLS 10 Unmodified _WEWRQCQWLS_ 0 0 0 ENST00000488946.1_1_19:49994460-49994508:+|nuORF ENST00000488946.1_1_19:49994460-49994508:+|nuORF ENST00000488946.1_1_19:49994460-49994508:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.5534362792969 3 474.552156 1420.63464 0.5032 0.00023879 0.55123 0.00026159 1.0544 0.00050038 474.5528335089259 53.305 0.37835 53.305 53.061 53.439 0 42 16 4 0 0 0 0.69377 1 29523 29523 1.7423 0.14999 1 10463000 75585 14230 50360 51463 88194 88194 -0.05885237219854389 WEWRRKRWRLA 11 Unmodified _WEWRRKRWRLA_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 821.8360595703125 2 821.963117 1641.91168 NaN NaN NaN NaN NaN NaN NaN 23.462 1 23.474 22.974 23.974 0.012396 0 0 0 0.9435 1 11966 11966 0 0 1 + 75586 27251 50361 51464 88195 88195 0.11640216779119328 WFCDQFNP 8 Unmodified _WFCDQFNP_ 0 0 0 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 REV__nc|ENSG00000164796|Q7Z407-3|CSMD3 MSMS AL20221201_MKP_PDAC_01 4 528.7141723632812 2 528.715827 1055.4171 NaN NaN NaN NaN NaN NaN NaN 90.74 1 84.564 84.064 85.064 -6.1757 0 0 0 0.92452 1 59952 59952 15.847 4.2069 1 + 75587 21951 50362 51465 88196 88196 -0.10839007422441682 WFDGKLVTV 9 Unmodified _WFDGKLVTV_ 0 0 0 ENSG00000174106|ENST00000308330|LEMD3;ENST00000539442.1_1_12:65639428-65640102:+|nuORF ENSG00000174106|ENST00000308330|LEMD3 ENSG00000174106|ENST00000308330|LEMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7918090820312 2 532.792392 1063.57023 0.92846 0.00049468 -1.7705 -0.00094331 -0.84204 -0.00044863 532.7918182321723 66.588 0.28712 66.597 66.438 66.725 0.0095596 20 13 2 0 0 0 0.025842 1 36501 36501 57.722 23.32 1 7309200 75588 8389 50363 51466 88197 88197 0.04098930965665204 WFDKSFTFV 9 Unmodified _WFDKSFTFV_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.7902221679688 2 588.78985 1175.56515 0.23422 0.00013791 0.60797 0.00035796 0.84219 0.00049587 588.790041193191 79.83 0.64835 79.887 79.421 80.069 0.057213 35 19 3 0 0 0 0.076472 1 44121 44121 49.933 30.676 1 6351200 75589 2701 50364 51467 88198 88198 -0.015613728969810836 WFDVYDAF 8 Unmodified _WFDVYDAF_ 0 0 0 ENST00000579768.1_1_17:55926599-55927356:-|nuORF;ENSG00000181610|ENST00000313608|MRPS23 ENST00000579768.1_1_17:55926599-55927356:-|nuORF ENST00000579768.1_1_17:55926599-55927356:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7330932617188 2 531.732 1061.44945 0.54443 0.00028949 0.98592 0.00052425 1.5304 0.00081374 531.7323919200588 47.669 0.32822 47.63 47.455 47.783 -0.038643 51 15 4 0 0 0 0.80143 1 25750 25750 5.7604 0.46354 1 51275000 75590 8980 50365 51468 88199 88199 -0.07881896747812789 WFEQHQIQLS 10 Unmodified _WFEQHQIQLS_ 0 0 0 REV__ENST00000512876.5_1_5:138629414-138653336:+|nuORF REV__ENST00000512876.5_1_5:138629414-138653336:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.8260498046875 2 658.325119 1314.63569 -0.02673 -1.7597E-05 -0.99775 -0.00065684 -1.0245 -0.00067444 658.324185583081 86.159 0.20453 86.159 86.064 86.269 0 16 10 2 0 0 0 0.72044 1 47750 47750 0.35063 0 1 240070 + 75591 28172 50366 51469 88200 88200 -0.009046995792914458 WFERFWPN 8 Unmodified _WFERFWPN_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2 REV__ENSG00000164082|ENST00000395052|GRM2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 590.8684692382812 2 591.279983 1180.54541 1.4781 0.00087396 -1.7012 -0.0010059 -0.22316 -0.00013195 591.2790022869003 100.82 0.34045 94.644 94.599 94.939 -6.1757 27 20 3 0 0 0 8.7369 1 67555 67555 0.69038 0 1 42454000 + 75592 21865 50367 51470 88201 88201 -0.03763704117045563 WFETIWYRVFY 11 Unmodified _WFETIWYRVFY_ 0 0 0 REV__ENSG00000172575|ENST00000310803|RASGRP1 REV__ENSG00000172575|ENST00000310803|RASGRP1 MSMS AL20221201_MKP_PDAC_01 4 805.397216796875 2 805.395544 1608.77654 NaN NaN NaN NaN NaN NaN NaN 99.824 1 93.648 93.148 94.148 -6.1757 0 0 0 0.93893 1 66598 66598 3.2813 0.28607 1 + 75593 22662 50368 51471 88202 88202 -0.003501209258729432 WFFFFFFFFRL 11 Unmodified _WFFFFFFFFRL_ 0 0 0 REV__ENST00000335154.9_1_12:50038759-50038969:-|nuORF REV__ENST00000335154.9_1_12:50038759-50038969:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 826.4193115234375 2 825.918458 1649.82236 1.3834 0.0011426 -0.072511 -5.9889E-05 1.3109 0.0010827 825.9177995241645 97.833 0.19425 91.658 91.537 91.731 -6.1757 28 13 3 0 0 0 0.74157 1 64813 64813 0.35063 0.35063 1 67121000 + 75594 25632 50369 51472 88203 88203 0.023445690469998226 WFFGFILF 8 Unmodified _WFFGFILF_ 0 0 0 REV__ENST00000503043.1_1_4:119234230-119239656:-|nuORF REV__ENST00000503043.1_1_4:119234230-119239656:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7848510742188 2 538.783839 1075.55312 NaN NaN NaN NaN NaN NaN NaN 86.485 1 85.982 85.482 86.482 -0.50318 0 0 0 0.9706 1 47321 47321 6.3541 1.1234 1 + 75595 28035 50370 51473 88204 88204 0.01837055150508604 WFFSSTNAFTS 11 Unmodified _WFFSSTNAFTS_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.1953430175781 3 432.196144 1293.5666 -0.27836 -0.00012031 0.32766 0.00014161 0.049297 2.1306E-05 432.1955490194529 34.023 0.30208 33.832 33.718 34.02 -0.19131 28 11 4 0 0 0 0.73389 1 17773 17773 0.36667 0 1 2310200 + 75596 23166 50371 51474 88205 88205 -0.06843783598856135 WFFSSTNAFTS 11 Unmodified _WFFSSTNAFTS_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 432.196144 1293.5666 -0.27836 -0.00012031 0.32766 0.00014161 0.049297 2.1306E-05 432.1955490194529 34.023 0.30208 33.832 33.718 34.02 -0.19131 0.026842 0.0021543 NaN 0.36667 28 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2310200 + 75597 23166 50371 51474 -0.06843783598856135 WFFSSTNAFTS 11 Unmodified _WFFSSTNAFTS_ 0 0 0 REV__ENSG00000180758|ENST00000377411|GPR157 REV__ENSG00000180758|ENST00000377411|GPR157 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 432.196144 1293.5666 0.23526 0.00010168 -2.3828 -0.0010298 -2.1475 -0.00092815 432.52958106104336 33.75 0.14138 33.778 33.696 33.837 0.028934 -0.026842 -0.0013601 NaN 0.36667 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 746270 + 75598 23166 50371 51474 -0.06843783598856135 WFGFACLLL 9 Unmodified _WFGFACLLL_ 0 0 0 REV__ENSG00000167098|ENST00000356173|SUN5 REV__ENSG00000167098|ENST00000356173|SUN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2822875976562 2 535.280606 1068.54666 1.2145 0.00065011 0.49115 0.0002629 1.7057 0.00091302 535.2818198196574 64.547 0.32861 58.371 58.315 58.644 -6.1757 26 18 2 0 0 0 0.22317 1 41835 41835 20.871 0.41758 1 23155000 + 75599 22179 50372 51475 88206 88206 0.015127939274862001 WFGKQPDF 8 Unmodified _WFGKQPDF_ 0 0 0 REV__ENSG00000138653|ENST00000264363|NDST4 REV__ENSG00000138653|ENST00000264363|NDST4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2516479492188 2 512.747985 1023.48142 0.38656 0.00019821 2.1146 0.0010843 2.5012 0.0012825 512.7488577148796 52.815 0.36451 52.815 52.617 52.982 0 43 16 3 0 0 0 0.70294 1 29189 29189 16.942 5.302 1 14316000 + 75600 20351 50373 51476 88207 88207 -0.029384842740114436 WFGKQPDF 8 Unmodified _WFGKQPDF_ 0 0 0 REV__ENSG00000138653|ENST00000264363|NDST4 REV__ENSG00000138653|ENST00000264363|NDST4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2516479492188 2 512.747985 1023.48142 0.38656 0.00019821 2.1146 0.0010843 2.5012 0.0012825 512.7488577148796 52.815 0.36451 52.815 52.617 52.982 0 43 16 3 0 0 0 8.7369 1 29189 29189 16.942 9.0321 1 14316000 + 75601 20351 50373 51476 88208 88208 -0.029384842740114436 WFGLLLFLF 9 Unmodified _WFGLLLFLF_ 0 0 0 REV__ENST00000359320.7_1_14:23846361-23846430:+|nuORF REV__ENST00000359320.7_1_14:23846361-23846430:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.333251953125 2 578.333696 1154.65284 2.2583 0.001306 -0.76902 -0.00044475 1.4893 0.00086129 578.333069188688 94.109 0.48104 94.124 93.954 94.435 0.014244 39 17 3 0 0 0 0.22317 1 52425 52425 20.871 0 1 2765300 + 75602 25889 50374 51477 88209 88209 0.08169872764460706 WFGVNPRI 8 Unmodified _WFGVNPRI_ 0 0 0 REV__ENSG00000276023|ENST00000617516|DUSP14 REV__ENSG00000276023|ENST00000617516|DUSP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2294006347656 2 494.771794 987.529036 -0.28977 -0.00014337 0.77475 0.00038332 0.48497 0.00023995 494.7722194154165 77.168 0.13656 76.685 76.647 76.784 -0.4826 8 5 2 0 0 0 8.7369 1 42276 42276 2.8892 0 1 365240 + 75603 24656 50375 51478 88210 88210 0.03477214716838262 WFHFKRYRYRR 11 Unmodified _WFHFKRYRYRR_ 0 0 0 nc|ENSG00000105298|Q8WUQ7-2|CACTIN;ENSG00000105298|ENST00000429344|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN nc|ENSG00000105298|Q8WUQ7-2|CACTIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 858.1784057617188 2 857.963117 1713.91168 NaN NaN NaN NaN NaN NaN NaN 107.89 1 107.84 107.34 108.34 -0.047607 0 0 0 0.9435 1 59763 59763 0 0 1 75604 2301 50376 51479 88211 88211 0.08328216779091235 WFHLNNQMLVL 11 Unmodified _WFHLNNQMLVL_ 0 0 0 ENST00000374875.5_1_10:33468482-33468866:-|nuORF ENST00000374875.5_1_10:33468482-33468866:-|nuORF ENST00000374875.5_1_10:33468482-33468866:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2473449707031 3 472.248185 1413.72273 0.58386 0.00027572 -0.64183 -0.0003031 -0.057971 -2.7377E-05 472.2480758268813 60.822 0.37489 60.822 60.625 60.999 0 36 15 3 0 0 0 0.73992 1 34008 34008 0.50596 0.50596 1 1757600 75605 12462 50377 51480 88212 88212 0.03241383370755102 WFKFQRYFRRK 11 Unmodified _WFKFQRYFRRK_ 0 0 0 ENSG00000075035|ENST00000547525|WSCD2;nc|ENSG00000075035|Q2TBF2-2|WSCD2 ENSG00000075035|ENST00000547525|WSCD2 ENSG00000075035|ENST00000547525|WSCD2 MSMS AL20221201_MKP_PDAC_01 4 831.4666748046875 2 831.462419 1660.91028 NaN NaN NaN NaN NaN NaN NaN 81.865 1 75.689 75.189 76.189 -6.1757 0 0 0 0.94301 1 53753 53753 0.35063 0.043601 1 75606 1141 50378 51481 88213 88213 0.10626582690315445 WFKNICNLI 9 Unmodified _WFKNICNLI_ 0 0 0 REV__ENSG00000177181|ENST00000431473|RIMKLA REV__ENSG00000177181|ENST00000431473|RIMKLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.30859375 2 575.807519 1149.60049 0.44475 0.00025609 1.1437 0.00065853 1.5884 0.00091462 575.8085299525258 75.394 0.29038 75.394 75.186 75.476 0 18 12 2 0 0 0 0.55144 1 41863 41863 4.3292 0 1 535490 + 75607 22968 50379 51482 88214 88214 0.03166966359208345 WFKNICNLI 9 Unmodified _WFKNICNLI_ 0 0 0 REV__ENSG00000177181|ENST00000431473|RIMKLA REV__ENSG00000177181|ENST00000431473|RIMKLA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.30859375 2 575.807519 1149.60049 0.44475 0.00025609 1.1437 0.00065853 1.5884 0.00091462 575.8085299525258 75.394 0.29038 75.394 75.186 75.476 0 18 12 2 0 0 0 0.21473 1 41863 41863 4.3292 0 1 535490 + 75608 22968 50379 51482 88215 88215 0.03166966359208345 WFKPHYKIMI 10 Unmodified _WFKPHYKIMI_ 0 0 0 REV__ENSG00000135605|ENST00000381501|TEC REV__ENSG00000135605|ENST00000381501|TEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.9176635742188 3 454.917888 1361.73183 0.40907 0.0001861 0.54292 0.00024698 0.95199 0.00043308 454.9180011710779 19.604 0.12378 19.612 19.548 19.672 0.0078487 19 7 3 0 0 0 0.67413 1 9964 9964 5.7834 1.6668 1 2292500 + 75609 20080 50380 51483 88216 88216 0.0654377672708506 WFKPHYKIMI 10 Unmodified _WFKPHYKIMI_ 0 0 0 REV__ENSG00000135605|ENST00000381501|TEC REV__ENSG00000135605|ENST00000381501|TEC MULTI-SECPEP AL20221201_MKP_PDAC_01 4 455.2254943847656 3 454.917888 1361.73183 1.0934 0.00049739 0.4816 0.00021909 1.575 0.00071648 454.91809766623027 21.866 0.29263 19.131 19.015 19.307 -2.7348 29 16 2 0 0 0 0.23806 1 11773 11773 5.7834 0.38072 1 4040000 + 75610 20080 50380 51483 88217 88217 0.0654377672708506 WFKPHYKIMI 10 Unmodified _WFKPHYKIMI_ 0 0 0 REV__ENSG00000135605|ENST00000381501|TEC REV__ENSG00000135605|ENST00000381501|TEC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 454.917888 1361.73183 0.40907 0.0001861 0.54292 0.00024698 0.95199 0.00043308 454.9180011710779 19.604 0.12378 19.612 19.548 19.672 0.0078487 0 0 NaN 5.7834 19 7 3 NaN NaN NaN NaN 0 NaN NaN 0 2292500 + 75611 20080 50380 51483 0.0654377672708506 WFLSLFPLRDR 11 Unmodified _WFLSLFPLRDR_ 0 0 0 REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.9397277832031 3 483.938228 1448.79285 NaN NaN NaN NaN NaN NaN NaN 18.302 1 18.308 17.808 18.808 0.0060463 0 0 0 0.94299 1 9270 9270 0.36667 0.20735 1 + 75612 28925 50381 51484 88218 88218 0.0864100503085865 WFMIYALF 8 Unmodified _WFMIYALF_ 0 0 0 REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7119750976562 2 545.775157 1089.53576 0.23956 0.00013074 -1.4792 -0.00080729 -1.2396 -0.00067654 545.7742807838991 76.201 0.30577 76.201 76.064 76.37 0 35 12 3 0 0 0 0.80624 1 42327 42327 2.8892 0 1 3874900 + 75613 20528 50382 51485 88219 88219 -0.005426084468126646 WFMYWVMGF 9 Unmodified _WFMYWVMGF_ 0 0 0 REV__ENSG00000091664|ENST00000263160|SLC17A6 REV__ENSG00000091664|ENST00000263160|SLC17A6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.7763671875 2 633.777373 1265.54019 NaN NaN NaN NaN NaN NaN NaN 15.326 1 15.332 14.832 15.832 0.0057774 0 0 0 0.85737 1 7634 7634 0.6015 0.14316 1 + 75614 17897 50383 51486 88220 88220 -0.08195467295558956 WFNCLSMLV 9 Unmodified _WFNCLSMLV_ 0 0 0 ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A ENSG00000198915|ENST00000395810|RASGEF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.767822265625 2 556.767006 1111.51946 0.71688 0.00039913 -1.1723 -0.0006527 -0.45542 -0.00025356 556.7663686580577 84.083 0.40478 83.583 83.392 83.797 -0.49961 31 17 2 0 0 0 0.49272 1 45978 45978 7.9102 0 1 3875200 75615 10195 50384 51487 88221 88221 -0.03184057675207441 WFPADCVEEVQ 11 Unmodified _WFPADCVEEVQ_ 0 0 0 ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 ENSG00000251322|ENST00000262795|SHANK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.7919921875 2 661.789721 1321.56489 NaN NaN NaN NaN NaN NaN NaN 36.185 1 35.936 35.436 36.436 -0.2497 0 0 0 0.82644 1 18976 18976 10.8 5.0677 1 75616 10757 50385 51488 88222 88222 -0.08303160679133725 WFPCSEIV 8 Unmodified _WFPCSEIV_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7321166992188 2 490.730946 979.447339 -0.33015 -0.00016201 -1.4715 -0.00072213 -1.8017 -0.00088415 490.730218685099 20.129 0.24993 20.129 20.046 20.296 0 29 19 2 0 0 0 8.7369 1 10202 10202 5.7604 0.52976 1 696300 + 75617 20434 50386 51489 88223 88223 -0.04320648757266099 WFPEEFELF 9 Unmodified _WFPEEFELF_ 0 0 0 REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.7867431640625 2 622.28714 1242.55973 0.29602 0.00018421 -1.7589 -0.0010945 -1.4629 -0.00091032 622.2859958037157 78.098 0.54437 78.098 77.965 78.509 0 47 24 3 0 0 0 0.55144 1 43535 43535 4.3292 2.2695 1 550260 + 75618 26011 50387 51490 88224 88224 -0.05185096479431195 WFPEEFELF 9 Unmodified _WFPEEFELF_ 0 0 0 REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF REV__ENST00000368535.2_1_10:135193041-135204956:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.286376953125 2 622.28714 1242.55973 -0.038455 -2.393E-05 -1.187 -0.00073864 -1.2254 -0.00076257 622.2857860420878 78.719 0.77995 78.233 77.928 78.708 -0.48596 73 33 4 0 0 0 0.39863 3 43089 42985;43089;43188 12.532 7.2347 1 1759700 + 75619 26011 50387 51490 88225;88226;88227 88226 -0.05185096479431195 WFPLFFFFFFF 11 Unmodified _WFPLFFFFFFF_ 0 0 0 REV__ENST00000597450.1_1_2:136757602-136764807:+|nuORF REV__ENST00000597450.1_1_2:136757602-136764807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.5991821289062 3 531.265282 1590.77402 0.99204 0.00052704 -1.6158 -0.0008584 -0.62373 -0.00033137 531.5987315386615 46.345 0.53576 46.311 46.139 46.675 -0.033421 51 25 3 0 0 0 0.73992 1 24917 24917 0.50596 0.051438 1 3202800 + 75620 29228 50388 51491 88228 88228 0.0022607540711305774 WFPQRTQWKT 10 Unmodified _WFPQRTQWKT_ 0 0 0 ENST00000317008.4_1_18:77401988-77439691:-|nuORF ENST00000317008.4_1_18:77401988-77439691:-|nuORF ENST00000317008.4_1_18:77401988-77439691:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 689.3561401367188 2 689.356754 1376.69895 NaN NaN NaN NaN NaN NaN NaN 88.67 1 88.67 88.17 89.17 0 0 0 0 1.0024 1 49075 49075 0.40072 0 1 75621 11743 50389 51492 88229 88229 0.02567285928603269 WFQDFHRVR 9 Unmodified _WFQDFHRVR_ 0 0 0 REV__nc|ENSG00000119596|P49750-3|YLPM1 REV__nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8877868652344 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 104.57 1 104.52 104.02 105.02 -0.048737 0 0 0 0.84564 1 58061 58061 1.0715 0.3738 1 + 75622 19195 50390 51493 88230 88230 0.008538634428759906 WFQHRRNRRRR 11 Unmodified _WFQHRRNRRRR_ 0 0 0 nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000464624.6_1_20:57428320-57466719:+|nuORF;nc|ENSG00000087460|Q5JWF2-3|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MSMS AL20221201_MKP_PDAC_01 4 834.4694213867188 2 834.469964 1666.92537 NaN NaN NaN NaN NaN NaN NaN 74.508 1 68.333 67.833 68.833 -6.1757 0 0 0 0.9435 1 48710 48710 0 0 1 75623 16063 50391 51494 88231 88231 0.11858887330890866 WFQNRRTKWRR 11 Unmodified _WFQNRRTKWRR_ 0 0 0 ENSG00000164438|ENST00000296921|TLX3;ENSG00000107807|ENST00000370196|TLX1;ENSG00000115297|ENST00000233638|TLX2 ENSG00000164438|ENST00000296921|TLX3;ENSG00000115297|ENST00000233638|TLX2 ENSG00000115297|ENST00000233638|TLX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 817.448974609375 2 817.450374 1632.8862 NaN NaN NaN NaN NaN NaN NaN 58.161 1 57.671 57.171 58.171 -0.48974 0 0 0 0.9435 1 31618 31618 0 0 1 75624 7195;3107 50392 51495 88232 88232 0.09506742256667167 WFQRQQLLT 9 Unmodified _WFQRQQLLT_ 0 0 0 ENSG00000143344|ENST00000360851|RGL1;nc|ENSG00000143344|Q9NZL6-2|RGL1 ENSG00000143344|ENST00000360851|RGL1 ENSG00000143344|ENST00000360851|RGL1 MSMS AL20221201_MKP_PDAC_01 4 407.2254333496094 3 407.224257 1218.65094 NaN NaN NaN NaN NaN NaN NaN 9.0791 1 6.5971 6.0971 7.0971 -2.482 0 0 0 0.86004 1 4580 4580 0.26902 0 1 75625 5495 50393 51496 88233 88233 0.050362120085537754 WFQSPSWSTMY 11 Unmodified _WFQSPSWSTMY_ 0 0 0 REV__ENST00000478359.5_1_1:209952752-209952878:+|nuORF REV__ENST00000478359.5_1_1:209952752-209952878:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.8723449707031 3 473.872784 1418.59652 -0.28824 -0.00013659 0.016647 7.8884E-06 -0.27159 -0.0001287 473.8724630626031 25.65 0.18842 25.65 25.528 25.717 0 13 8 2 0 0 0 0.7326 1 13160 13160 1.2148 0.10508 1 686990 + 75626 27633 50394 51497 88234 88234 -0.0960316792516096 WFRDFWEQKFQ 11 Unmodified _WFRDFWEQKFQ_ 0 0 0 nc|ENSG00000198822|Q14832-2|GRM3;ENSG00000198822|ENST00000361669|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 nc|ENSG00000198822|Q14832-2|GRM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.5931396484375 3 539.593009 1615.7572 -0.2645 -0.00014272 0.95944 0.00051771 0.69495 0.00037499 539.593333132436 36.752 0.22011 36.774 36.661 36.881 0.021545 20 9 3 0 0 0 0.74046 1 19497 19497 0.45452 0.35968 1 2182800 75627 10162 50395 51498 88235 88235 -0.026050772167991454 WFRWWLHHLVR 11 Unmodified _WFRWWLHHLVR_ 0 0 0 nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-5|DAZAP2 nc|ENSG00000183283|Q15038-5|DAZAP2 MSMS AL20221201_MKP_PDAC_01 4 818.4466552734375 2 818.444029 1634.87351 NaN NaN NaN NaN NaN NaN NaN 65.082 1 58.906 58.406 59.406 -6.1757 0 0 0 0.9435 1 42222 42222 0 0 1 75628 16446 50396 51499 88236 88236 0.08146330864428819 WFTLNLVM 8 Unmodified _WFTLNLVM_ 0 0 0 REV__nc|ENSG00000204403|Q6UXS9-2|CASP12 REV__nc|ENSG00000204403|Q6UXS9-2|CASP12 MSMS AL20221201_MKP_PDAC_01 4 512.2688598632812 2 512.270238 1022.52592 NaN NaN NaN NaN NaN NaN NaN 74.573 1 68.398 67.898 68.898 -6.1757 0 0 0 0.62748 1 48755 48755 32.305 3.811 1 + 75629 29908 50397 51500 88237 88237 0.015562035478183134 WFTRMFAYFRR 11 Unmodified _WFTRMFAYFRR_ 0 0 0 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1;nc|ENSG00000137166|Q8IVH2-3|FOXP4;nc|ENSG00000137166|Q8IVH2-2|FOXP4;ENSG00000137166|ENST00000307972|FOXP4 nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000137166|Q8IVH2-3|FOXP4 nc|ENSG00000285708|Q9H334-3|FOXP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 790.9022827148438 2 790.900805 1579.78706 1.298 0.0010266 -1.0169 -0.00080429 0.28111 0.00022233 790.9005318689109 95.071 0.31023 88.895 88.711 89.021 -6.1757 25 16 3 0 0 0 0.69316 1 62986 62986 4.897 1.6157 1 5929000 75630 16620;4906 50398 51501 88238 88238 0.020355832475388524 WFVFSVYL 8 Unmodified _WFVFSVYL_ 0 0 0 nc|ENSG00000126251|O15529|GPR42;ENSG00000185897|ENST00000327809|FFAR3;ENSG00000126251|ENST00000454971|GPR42 nc|ENSG00000126251|O15529|GPR42 nc|ENSG00000126251|O15529|GPR42 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 354.1860046386719 3 354.188261 1059.54295 NaN NaN NaN NaN NaN NaN NaN 14.54 1 14.54 14.04 15.04 0 0 0 0 0.97444 1 6920 6920 0.45834 0 1 75631 3938 50399 51502 88239 88239 0.015564474252869331 WFVPPPGVEY 10 Unmodified _WFVPPPGVEY_ 0 0 0 REV__ENSG00000118997|ENST00000312428|DNAH7 REV__ENSG00000118997|ENST00000312428|DNAH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.5352783203125 3 397.534209 1189.5808 -0.070442 -2.8003E-05 0.75219 0.00029902 0.68174 0.00027102 397.8686918509356 18.548 0.092356 18.554 18.514 18.606 0.0060463 8 5 2 0 0 0 0.6606 1 9417 9417 3.8763 1.033 1 963690 + 75632 19178 50400 51503 88240 88240 -0.0064108637989193085 WFWDRRRRRNR 11 Unmodified _WFWDRRRRRNR_ 0 0 0 REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 852.4611206054688 2 852.464347 1702.91414 NaN NaN NaN NaN NaN NaN NaN 88.301 1 82.125 81.625 82.625 -6.1757 0 0 0 0.9435 1 58249 58249 0 0 1 + 75633 25949 50401 51504 88241 88241 0.09080065236753398 WFWQDKFVF 9 Unmodified _WFWQDKFVF_ 0 0 0 REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000156103|ENST00000286614|MMP16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827819824219 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 52.675 1 52.675 52.175 53.175 0 0 0 0 0.84369 1 29161 29161 1.1933 0 1 + 75634 21311 50402 51505 88242 88242 -0.015416912516911907 WFWQDKFVF 9 Unmodified _WFWQDKFVF_ 0 0 0 REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000156103|ENST00000286614|MMP16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8820495605469 3 434.88172 1301.62333 NaN NaN NaN NaN NaN NaN NaN 106.36 1 106.36 105.86 106.86 0 0 0 0 0.85737 1 58404 58404 0.26902 0.1097 1 + 75635 21311 50402 51505 88243 88243 -0.015416912516911907 WFWRRRRLSR 10 Unmodified _WFWRRRRLSR_ 0 0 0 REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 759.9420166015625 2 759.936902 1517.85925 -0.0040108 -3.0479E-06 0.32636 0.00024802 0.32235 0.00024497 760.4381726588999 97.255 0.65187 97.255 96.95 97.602 0 128 31 5 0 0 0 0.72607 1 53621 53621 0 0 1 9786200 + 75636 28480 50403 51506 88244 88244 0.12103678436164955 WFWRRRRLSR 10 Unmodified _WFWRRRRLSR_ 0 0 0 REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF REV__ENST00000533297.1_1_11:111896132-111933256:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 759.4384765625 2 759.936902 1517.85925 -0.0040108 -3.0479E-06 0.32636 0.00024802 0.32235 0.00024497 760.4381726588999 97.255 0.65187 97.255 96.95 97.602 0 128 31 5 0 0 0 0.24012 1 53827 53827 0 0 1 9786200 + 75637 28480 50403 51506 88245 88245 0.12103678436164955 WFWTGPSPHVT 11 Unmodified _WFWTGPSPHVT_ 0 0 0 ENST00000512411.5_1_4:8368690-8375449:-|nuORF ENST00000512411.5_1_4:8368690-8375449:-|nuORF ENST00000512411.5_1_4:8368690-8375449:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8814086914062 3 438.880379 1313.61931 0.39159 0.00017186 -0.30872 -0.00013549 0.082869 3.637E-05 438.8802852433707 22.238 0.16746 22.252 22.134 22.301 0.013796 11 6 2 0 0 0 0.74203 1 11432 11432 0.08335 0 1 565370 75638 14624 50404 51507 88246 88246 -0.024957807454029535 WFWWLEYYYNC 11 Unmodified _WFWWLEYYYNC_ 0 0 0 REV__nc|ENSG00000166272|Q9NX94|WBP1L REV__nc|ENSG00000166272|Q9NX94|WBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.8525390625 2 836.850113 1671.68567 NaN NaN NaN NaN NaN NaN NaN 83.008 1 83.07 82.57 83.57 0.062004 0 0 0 0.9435 1 45920 45920 0 0 1 + 75639 22101 50405 51508 88247 88247 -0.12330332965620983 WFWWYWQKEKI 11 Unmodified _WFWWYWQKEKI_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 850.4246215820312 2 850.424636 1698.83472 NaN NaN NaN NaN NaN NaN NaN 94.503 1 94.503 94.003 95.003 0 0 0 0 0.9435 1 52240 52240 0 0 1 75640 253 50406 51509 88248 88248 0.013255607193741525 WFWWYWQKEKI 11 Unmodified _WFWWYWQKEKI_ 0 0 0 ENSG00000001036|ENST00000002165|FUCA2;nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF ENSG00000001036|ENST00000002165|FUCA2 ENSG00000001036|ENST00000002165|FUCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 850.4234619140625 2 850.424636 1698.83472 NaN NaN NaN NaN NaN NaN NaN 96.052 1 96.056 95.556 96.556 0.004158 0 0 0 0.9435 1 53354 53354 0 0 1 75641 253 50406 51509 88249 88249 0.013255607193741525 WFYKLIKRWWE 11 Unmodified _WFYKLIKRWWE_ 0 0 0 REV__ENSG00000154864|ENST00000674853|PIEZO2 REV__ENSG00000154864|ENST00000674853|PIEZO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 827.9476928710938 2 827.948279 1653.882 NaN NaN NaN NaN NaN NaN NaN 89.048 1 88.543 88.043 89.043 -0.50423 0 0 0 0.9435 1 48692 48692 0 0 1 + 75642 21250 50407 51510 88250 88250 0.08121839990394619 WFYVELII 8 Unmodified _WFYVELII_ 0 0 0 ENST00000421064.5_1_22:23995358-23995538:-|nuORF ENST00000421064.5_1_22:23995358-23995538:-|nuORF ENST00000421064.5_1_22:23995358-23995538:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0217895507812 3 361.535549 1081.58482 1.0112 0.0003656 -2.4043 -0.00086925 -1.3931 -0.00050365 361.5345496490955 17.151 0.14482 14.565 14.492 14.637 -2.5866 47 26 3 0 0 0 8.7369 1 8918 8918 1.6526 0.58116 1 3270700 75643 13106 50408 51511 88251 88251 0.04729003113811814 WGCPIARK 8 Unmodified _WGCPIARK_ 0 0 0 ENST00000562017.1_1_16:56642884-56643094:+|nuORF ENST00000562017.1_1_16:56642884-56643094:+|nuORF ENST00000562017.1_1_16:56642884-56643094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.7508850097656 2 465.752547 929.490542 NaN NaN NaN NaN NaN NaN NaN 97.244 1 97.244 96.744 97.744 0 0 0 0 0.97444 1 53734 53734 0.79363 0.10326 1 75644 15337 50409 51512 88252 88252 0.022975858106633495 WGDDCVTGWE 10 Unmodified _WGDDCVTGWE_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000031360 REV__CON__ENSEMBL:ENSBTAP00000031360 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2254638671875 2 584.224214 1166.43387 0.87993 0.00051408 1.3432 0.00078473 2.2231 0.0012988 584.224684066433 91.506 0.57534 85.33 84.975 85.55 -6.1757 60 31 3 0 0 0 0.62068 1 60478 60478 10.074 3.3508 1 15290000 + + 75645 16829 50410 51513 88253 88253 -0.14268551327177192 WGEFPEKHF 9 Unmodified _WGEFPEKHF_ 0 0 0 ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF ENST00000526048.1_1_11:64881042-64882849:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8492736816406 3 392.853941 1175.53999 NaN NaN NaN NaN NaN NaN NaN 32.098 1 31.969 31.469 32.469 -0.12915 0 0 0 0.84369 1 16705 16705 1.1933 0 1 75646 14806 50411 51514 88254 88254 -0.04075427699535794 WGFCHNRRGK 10 Unmodified _WGFCHNRRGK_ 0 0 0 ENST00000360620.7_1_7:100400564-100401029:-|nuORF ENST00000360620.7_1_7:100400564-100401029:-|nuORF ENST00000360620.7_1_7:100400564-100401029:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.8121948242188 2 630.81199 1259.60943 0.16738 0.00010558 1.7695 0.0011162 1.9369 0.0012218 630.8132024715039 97.274 0.68275 97.274 96.972 97.654 0 39 32 2 0 0 0 0.72196 1 53742 53742 0.45834 0.057624 1 1092500 75647 12169 50412 51515 88255 88255 -0.009992472317890133 WGFMPTLGVL 10 Unmodified _WGFMPTLGVL_ 0 0 0 REV__ENSG00000282608|ENST00000241356|ADORA3 REV__ENSG00000282608|ENST00000241356|ADORA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7975463867188 2 560.79662 1119.57869 0.92138 0.00051671 1.0333 0.00057945 1.9546 0.0010962 560.7969630765468 75.145 0.19862 74.668 74.582 74.781 -0.47713 12 8 2 0 0 0 0.6606 1 41162 41162 7.2892 0.56607 1 958180 + 75648 24685 50413 51516 88256 88256 0.023681616106387082 WGFMPTLGVL 10 Unmodified _WGFMPTLGVL_ 0 0 0 REV__ENSG00000282608|ENST00000241356|ADORA3 REV__ENSG00000282608|ENST00000241356|ADORA3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.79662 1119.57869 0.92138 0.00051671 1.0333 0.00057945 1.9546 0.0010962 560.7969630765468 75.145 0.19862 74.668 74.582 74.781 -0.47713 0 0 NaN 7.2892 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 958180 + 75649 24685 50413 51516 0.023681616106387082 WGGVTPTP 8 Unmodified _WGGVTPTP_ 0 0 0 ENST00000312989.11_1_11:67165675-67165951:-|nuORF ENST00000312989.11_1_11:67165675-67165951:-|nuORF ENST00000312989.11_1_11:67165675-67165951:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 814.4093627929688 1 814.40938 813.402104 -0.79027 -0.0006436 0.78546 0.00063969 -0.0048072 -3.915E-06 814.409789413302 55.409 0.18287 55.409 55.327 55.509 0 14 7 2 0 0 0 0.61462 1 30768 30768 24.674 2.9272 1 940390 75650 11706 50414 51517 88257 88257 -0.012061312281502978 WGGWGQGA 8 Unmodified _WGGWGQGA_ 0 0 0 ENST00000308219.13_1_11:1482541-1482889:+|nuORF ENST00000308219.13_1_11:1482541-1482889:+|nuORF ENST00000308219.13_1_11:1482541-1482889:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 818.3582763671875 1 818.358013 817.350737 -0.097472 -7.9767E-05 0.86839 0.00071065 0.77092 0.00063089 818.3583859849534 104.75 0.055466 104.65 104.62 104.68 -0.096809 31 21 2 0 0 0 0.80992 1 57034 57034 0.69038 0.69038 1 6670800 75651 11651 50415 51518 88258 88258 -0.06524455202190893 WGKENVVDD 9 Unmodified _WGKENVVDD_ 0 0 0 REV__ENST00000440465.1_1_10:36811746-36813066:-|nuORF REV__ENST00000440465.1_1_10:36811746-36813066:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2478637695312 2 531.248546 1060.48254 0.031206 1.6578E-05 -0.46674 -0.00024795 -0.43553 -0.00023138 531.2482999594229 29.543 0.30755 29.574 29.451 29.759 0.030104 34 14 3 0 0 0 0.07916 1 15392 15392 37.974 1.847 1 44070000 + 75652 27077 50416 51519 88259 88259 -0.04528314695744484 WGLAAGGG 8 Unmodified _WGLAAGGG_ 0 0 0 nc|ENSG00000183688|Q8N5W9|RFLNB nc|ENSG00000183688|Q8N5W9|RFLNB nc|ENSG00000183688|Q8N5W9|RFLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.3434448242188 1 688.341301 687.334024 0.20139 0.00013862 0.67609 0.00046538 0.87748 0.00060401 688.3417630264896 59.589 0.41733 59.589 59.379 59.796 0 23 18 2 0 0 0 0.81107 1 33172 33172 0 0 1 1893500 75653 16450 50417 51520 88260 88260 -0.022149560881302932 WGLRGVLR 8 Unmodified _WGLRGVLR_ 0 0 0 ENST00000546743.5_2_12:51402289-51404511:-|nuORF ENST00000546743.5_2_12:51402289-51404511:-|nuORF ENST00000546743.5_2_12:51402289-51404511:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 478.7948303222656 2 478.793061 955.571569 NaN NaN NaN NaN NaN NaN NaN 43.308 1 38.543 38.043 39.043 -4.7648 0 0 0 0.65904 1 26288 26288 30.225 5.5509 1 75654 15110 50418 51521 88261 88261 0.09200609845095187 WGNFPCGPFEL 11 Unmodified _WGNFPCGPFEL_ 0 0 0 REV__nc|ENSG00000007171|P35228-2|NOS2 REV__nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.7833862304688 2 633.784241 1265.55393 0.57825 0.00036649 -1.7283 -0.0010954 -1.1501 -0.00072889 633.783126789664 83.09 0.25955 83.153 83.021 83.281 0.062447 18 9 2 0 0 0 0.65846 1 45984 45984 8.1555 1.4324 1 4659500 + 75655 17003 50419 51522 88262 88262 -0.0682251826274296 WGPGKPRL 8 Unmodified _WGPGKPRL_ 0 0 0 ENSG00000187546|ENST00000342526|AGMO ENSG00000187546|ENST00000342526|AGMO ENSG00000187546|ENST00000342526|AGMO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7678527832031 2 455.766512 909.518471 0.57815 0.0002635 1.0573 0.0004819 1.6355 0.00074541 455.76699441726055 73.352 0.32235 72.876 72.674 72.996 -0.47588 24 14 2 0 0 0 0.80975 1 40090 40090 0.79363 0 1 963430 75656 9564 50420 51523 88263 88263 0.06009232062422143 WGPLAVVLFF 10 Unmodified _WGPLAVVLFF_ 0 0 0 ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820|ENST00000238831|YIPF4 ENSG00000119820|ENST00000238831|YIPF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.8269653320312 2 574.828778 1147.643 0.37873 0.0002177 2.3908 0.0013743 2.7695 0.001592 574.8271000385046 74.675 0.48492 74.721 74.435 74.92 0.045959 59 21 4 0 0 0 0.32072 2 41224 41120;41224 18.135 0 1 5799800 75657 3473 50421 51524 88264;88265 88265 0.07508684759091011 WGQCQPFYVLR 11 Unmodified _WGQCQPFYVLR_ 0 0 0 nc|ENSG00000168743|Q6UXI9-6|NPNT nc|ENSG00000168743|Q6UXI9-6|NPNT nc|ENSG00000168743|Q6UXI9-6|NPNT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.56640625 3 466.232535 1395.67578 0.36559 0.00017045 -1.8109 -0.00084428 -1.4453 -0.00067383 466.5660732246222 78.469 0.25768 78.522 78.419 78.677 0.052444 15 10 2 0 0 0 0.71618 1 43386 43386 1.1098 0 1 1891500 75658 16371 50422 51525 88266 88266 -0.006234761803852962 WGRENLAPRA 10 Unmodified _WGRENLAPRA_ 0 0 0 REV__ENST00000395785.6_2_8:110551954-110552026:+|nuORF REV__ENST00000395785.6_2_8:110551954-110552026:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5440673828125 3 390.54399 1168.61014 0.047981 1.8739E-05 1.0193 0.00039809 1.0673 0.00041683 390.54427468329 21.91 0.28214 21.924 21.758 22.04 0.013796 35 13 4 0 0 0 0.61603 1 11212 11212 10.315 0.55098 1 5010600 + 75659 26486 50423 51526 88267 88267 0.03257870688935327 WGRENLAPRA 10 Unmodified _WGRENLAPRA_ 0 0 0 REV__ENST00000395785.6_2_8:110551954-110552026:+|nuORF REV__ENST00000395785.6_2_8:110551954-110552026:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.544677734375 3 390.54399 1168.61014 0.55041 0.00021496 0.43578 0.00017019 0.98619 0.00038515 390.54415379427275 24.608 0.37967 21.725 21.541 21.921 -2.8831 49 20 3 0 0 0 0.56707 1 13472 13472 12.856 4.1042 1 17339000 + 75660 26486 50423 51526 88268 88268 0.03257870688935327 WGRIPDAQE 9 Unmodified _WGRIPDAQE_ 0 0 0 nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 nc|ENSG00000158683|Q8TDX9-2|PKD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2672729492188 2 536.26453 1070.51451 -0.55009 -0.00029499 1.8303 0.0009815 1.2802 0.00068651 536.2659323225815 30.187 0.20451 30.187 30.1 30.305 0 15 9 2 0 0 0 0.25681 1 15670 15670 19.257 0 1 1833100 75661 6602 50424 51527 88269 88269 -0.01792902221973236 WGRRRQWRWPQ 11 Unmodified _WGRRRQWRWPQ_ 0 0 0 REV__ENST00000513117.1_1_5:6633573-6668378:+|nuORF REV__ENST00000513117.1_1_5:6633573-6668378:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 806.4308471679688 2 806.429442 1610.84433 NaN NaN NaN NaN NaN NaN NaN 68.824 1 62.648 62.148 63.148 -6.1757 0 0 0 0.9435 1 44932 44932 0 0 1 + 75662 28176 50425 51528 88270 88270 0.06334186568165023 WGRRRRKRLGS 11 Unmodified _WGRRRRKRLGS_ 0 0 0 REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.6243591308594 3 476.623748 1426.84942 -0.53037 -0.00025279 0.21132 0.00010072 -0.31905 -0.00015207 476.6237439894374 101.22 0.24018 101.18 101.09 101.33 -0.04216 28 8 5 0 0 0 0.7453 1 56217 56217 0 0 1 160120000 + 75663 27677 50426 51529 88271 88271 0.1530649043079393 WGRRRRKRLGS 11 Unmodified _WGRRRRKRLGS_ 0 0 0 REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 476.623748 1426.84942 0.25628 0.00012215 0.7229 0.00034455 0.97918 0.0004667 476.62382527983993 101.15 0.094101 101.15 101.09 101.18 0 0.011591 0.00070815 NaN 0 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 772750 + 75664 27677 50426 51529 0.1530649043079393 WGRRRRKRLGS 11 Unmodified _WGRRRRKRLGS_ 0 0 0 REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 476.623748 1426.84942 0.43841 0.00020896 0.066203 3.1554E-05 0.50462 0.00024051 476.6236590219576 101.22 0.071075 101.08 101.03 101.11 -0.13293 -0.051168 -0.00023084 NaN 0 6 2 3 NaN NaN NaN NaN 0 NaN NaN 0 793150 + 75665 27677 50426 51529 0.1530649043079393 WGRRRRKRLGS 11 Unmodified _WGRRRRKRLGS_ 0 0 0 REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF REV__ENST00000480582.1_1_7:150555040-150557681:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 476.623748 1426.84942 -0.53037 -0.00025279 0.21132 0.00010072 -0.31905 -0.00015207 476.6237439894374 101.22 0.24018 101.18 101.09 101.33 -0.04216 0.039577 -2.3338E-05 NaN 0 28 8 5 NaN NaN NaN NaN 0 NaN NaN 0 160120000 + 75666 27677 50426 51529 0.1530649043079393 WGRWLPHY 8 Unmodified _WGRWLPHY_ 0 0 0 ENST00000337852.10_1_X:48566837-48567230:+|nuORF ENST00000337852.10_1_X:48566837-48567230:+|nuORF ENST00000337852.10_1_X:48566837-48567230:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7831420898438 2 557.782693 1113.55083 NaN NaN NaN NaN NaN NaN NaN 96.331 1 96.027 95.527 96.527 -0.30472 0 0 0 0.97444 1 52608 52608 0.79363 0 1 75667 11935 50427 51530 88272 88272 -0.0013998053457271453 WGRWWFWLERR 11 Unmodified _WGRWWFWLERR_ 0 0 0 REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF REV__ENST00000246635.7_1_17:39661629-39661743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.430419921875 2 839.431119 1676.84768 NaN NaN NaN NaN NaN NaN NaN 74.138 1 73.662 73.162 74.162 -0.47588 0 0 0 0.9435 1 40578 40578 0 0 1 + 75668 24866 50428 51531 88273 88273 0.036334366221353775 WGSKKKKKKK 10 Unmodified _WGSKKKKKKK_ 0 0 0 REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.4097900390625 2 623.411332 1244.80811 1.3526 0.0008432 -1.782 -0.0011109 -0.42943 -0.00026771 623.4100607469913 103.96 0.085197 97.782 97.729 97.814 -6.1757 37 28 2 0 0 0 0.71276 1 69657 69657 1.4819 0 1 5281600 + 75669 25005 50429 51532 88274 88274 0.19549916618734642 WGSLPFLK 8 Unmodified _WGSLPFLK_ 0 0 0 ENSG00000164299|ENST00000296739|SPZ1 ENSG00000164299|ENST00000296739|SPZ1 ENSG00000164299|ENST00000296739|SPZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.2713317871094 2 474.271096 946.527639 1.0147 0.00048125 0.77739 0.00036869 1.7921 0.00084994 474.2713235990202 82.637 0.33933 82.699 82.529 82.869 0.061996 30 12 3 0 0 0 0.58902 2 45675 45675;45777 26.884 7.4447 1 7688200 75670 7173 50430 51533 88275;88276 88275 0.05223580628091895 WGTGLLCH 8 Unmodified _WGTGLLCH_ 0 0 0 REV__ENST00000505297.5_1_4:108984787-108994051:-|nuORF REV__ENST00000505297.5_1_4:108984787-108994051:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 444.252197265625 2 443.71563 885.416708 1.3338 0.00059185 -1.2039 -0.00053419 0.12994 5.7656E-05 443.715062510511 21.267 0.42726 18.574 18.4 18.827 -2.693 72 36 3 0 0 0 8.7369 1 11491 11491 14.582 1.0738 1 16616000 + 75671 28069 50431 51534 88277 88277 -0.030583823516508346 WGTSPMPRCT 10 Unmodified _WGTSPMPRCT_ 0 0 0 ENST00000540866.2_1_12:123464712-123465360:+|nuORF ENST00000540866.2_1_12:123464712-123465360:+|nuORF ENST00000540866.2_1_12:123464712-123465360:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1737670898438 3 379.172288 1134.49503 NaN NaN NaN NaN NaN NaN NaN 61.738 1 61.738 61.238 62.238 0 0 0 0 0.97592 1 34422 34422 1.5923 0.96546 1 75672 15038 50432 51535 88278 88278 -0.06683317828719737 WGTSPMPRCT 10 Unmodified _WGTSPMPRCT_ 0 0 0 ENST00000540866.2_1_12:123464712-123465360:+|nuORF ENST00000540866.2_1_12:123464712-123465360:+|nuORF ENST00000540866.2_1_12:123464712-123465360:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.173583984375 3 379.172288 1134.49503 NaN NaN NaN NaN NaN NaN NaN 81.863 1 81.863 81.363 82.363 0 0 0 0 0.99248 1 45427 45427 0.62683 0 1 75673 15038 50432 51535 88279 88279 -0.06683317828719737 WGTVEVENP 9 Unmodified _WGTVEVENP_ 0 0 0 ENSG00000180096|ENST00000321367|SEPTIN1 ENSG00000180096|ENST00000321367|SEPTIN1 ENSG00000180096|ENST00000321367|SEPTIN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2535400390625 2 515.745639 1029.47673 0.38126 0.00019663 -1.7807 -0.00091838 -1.3994 -0.00072175 515.7436113095802 72.56 0.3465 72.56 72.433 72.779 0 23 15 3 0 0 0 0.20139 1 40489 40489 10.824 0.75 1 1546600 75674 8881 50433 51536 88280 88280 -0.036834132074318404 WGVRKKGT 8 Unmodified _WGVRKKGT_ 0 0 0 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2772827148438 2 466.277244 930.539935 -0.60427 -0.00028176 0.98139 0.0004576 0.37712 0.00017584 466.2775223591097 103.39 0.096474 103.35 103.28 103.38 -0.047928 10 3 4 0 0 0 0.81107 1 57422 57422 0 0 1 32017000 75675 5752 50434 51537 88281 88281 0.07188617091151173 WGVRKKGT 8 Unmodified _WGVRKKGT_ 0 0 0 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 931.546875 1 931.547211 930.539935 -0.31873 -0.00029692 0.065542 6.1056E-05 -0.25319 -0.00023586 931.547522487658 103.39 0.073128 103.35 103.28 103.36 -0.047928 4 2 2 0 0 0 0.81107 1 57423 57423 0 0 1 1238300 75676 5752 50434 51537 88282 88282 0.07188617091151173 WGVYRSPSF 9 Unmodified _WGVYRSPSF_ 0 0 0 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 ENSG00000110237|ENST00000263674|ARHGEF17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.8496398925781 3 366.85042 1097.52943 1.412 0.00051798 0.38515 0.00014129 1.7971 0.00065927 367.1854794054212 18.695 0.056667 16.074 16.03 16.086 -2.6215 8 5 2 0 0 0 0.58466 1 9862 9862 1.1933 0 1 2054900 75677 2709 50435 51538 88283 88283 -0.015434103539519128 WGWEWRRKRWR 11 Unmodified _WGWEWRRKRWR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4514770507812 2 851.452917 1700.89128 NaN NaN NaN NaN NaN NaN NaN 58.256 1 58.256 57.756 58.756 0 0 0 0 0.9435 1 32436 32436 0 0 1 + 75678 27251 50436 51539 88284 88284 0.06887046119254592 WGWEWRRKRWR 11 Unmodified _WGWEWRRKRWR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.4506225585938 2 851.452917 1700.89128 NaN NaN NaN NaN NaN NaN NaN 58.431 1 58.431 57.931 58.931 0 0 0 0 0.9435 1 32533 32533 0 0 1 + 75679 27251 50436 51539 88285 88285 0.06887046119254592 WGWEWRRKRWR 11 Unmodified _WGWEWRRKRWR_ 0 0 0 REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF REV__ENST00000456291.1_3_9:123638279-123638699:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 851.451416015625 2 851.452917 1700.89128 NaN NaN NaN NaN NaN NaN NaN 65.931 1 59.755 59.255 60.255 -6.1757 0 0 0 0.9435 1 42838 42838 0 0 1 + 75680 27251 50436 51539 88286 88286 0.06887046119254592 WGWLAQSL 8 Unmodified _WGWLAQSL_ 0 0 0 REV__nc|ENSG00000105519|Q13938-3|CAPS REV__nc|ENSG00000105519|Q13938-3|CAPS MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2898559570312 2 480.750527 959.486502 0.16318 7.8449E-05 1.4636 0.00070361 1.6268 0.00078206 480.75089126487 53.189 0.21727 53.126 53.002 53.219 -0.063423 15 10 2 0 0 0 8.7369 1 28815 28815 19.439 0 1 1394900 + 75681 29549 50437 51540 88287 88287 0.0051381958861611565 WGWWSSWFKSH 11 Unmodified _WGWWSSWFKSH_ 0 0 0 REV__ENST00000508444.1_1_5:148680784-148682217:+|nuORF REV__ENST00000508444.1_1_5:148680784-148682217:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 747.3410034179688 2 747.341104 1492.66765 NaN NaN NaN NaN NaN NaN NaN 10.917 1 10.838 10.338 11.338 -0.07938 0 0 0 0.9435 1 5315 5315 0 0 1 + 75682 28117 50438 51541 88288 88288 -0.05897287105494797 WGYLWKGF 8 Unmodified _WGYLWKGF_ 0 0 0 REV__ENST00000265981.6_1_11:10546880-10552281:-|nuORF REV__ENST00000265981.6_1_11:10546880-10552281:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.5349731445312 3 352.848239 1055.52289 0.56261 0.00019852 -1.2454 -0.00043945 -0.68283 -0.00024094 353.18205314223013 25.525 0.28601 22.642 22.444 22.73 -2.8831 25 15 3 0 0 0 8.7369 1 14000 14000 5.7319 1.7875 1 2158100 + 75683 25098 50439 51542 88289 88289 -0.002653035146977345 WHCCCTLCP 9 Unmodified _WHCCCTLCP_ 0 0 0 REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF REV__ENST00000440083.6_1_12:6443346-6451099:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.1920776367188 2 533.192293 1064.37003 NaN NaN NaN NaN NaN NaN NaN 3.4354 1 0.95345 0.45345 1.4535 -2.482 0 0 0 0.8622 1 1746 1746 0 0 1 + 75684 27071 50440 51543 88290 88290 -0.15957649561141807 WHCECSPGSC 10 Unmodified _WHCECSPGSC_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6859741210938 2 554.685887 1107.35722 NaN NaN NaN NaN NaN NaN NaN 0.1691 1 0.095182 -0.40482 0.59518 -0.07392 0 0 0 1.0061 1 87 87 0 0 1 75685 7866 50441 51544 88291 88291 -0.19216389419648294 WHCECSPGSC 10 Unmodified _WHCECSPGSC_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6851806640625 2 554.685887 1107.35722 NaN NaN NaN NaN NaN NaN NaN 3.2135 1 3.1415 2.6415 3.6415 -0.072029 0 0 0 1.0061 1 1580 1580 0 0 1 75686 7866 50441 51544 88292 88292 -0.19216389419648294 WHCECSPGSC 10 Unmodified _WHCECSPGSC_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.686279296875 2 554.685887 1107.35722 NaN NaN NaN NaN NaN NaN NaN 3.7334 1 3.6614 3.1614 4.1614 -0.072029 0 0 0 1.0061 1 1841 1841 0 0 1 75687 7866 50441 51544 88293 88293 -0.19216389419648294 WHCECSPGSC 10 Unmodified _WHCECSPGSC_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.6860961914062 2 554.685887 1107.35722 NaN NaN NaN NaN NaN NaN NaN 11.74 1 11.675 11.175 12.175 -0.064889 0 0 0 1.0061 1 5709 5709 0 0 1 75688 7866 50441 51544 88294 88294 -0.19216389419648294 WHCECSPGSC 10 Unmodified _WHCECSPGSC_ 0 0 0 nc|ENSG00000169344|P07911-3|UMOD;ENSG00000169344|ENST00000396138|UMOD;nc|ENSG00000169344|P07911-5|UMOD nc|ENSG00000169344|P07911-3|UMOD nc|ENSG00000169344|P07911-3|UMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.6871337890625 2 554.685887 1107.35722 NaN NaN NaN NaN NaN NaN NaN 4.0266 1 4.0203 3.5203 4.5203 -0.0062971 0 0 0 1.0061 1 2041 2041 0 0 1 75689 7866 50441 51544 88295 88295 -0.19216389419648294 WHCSLPFH 8 Unmodified _WHCSLPFH_ 0 0 0 nc|ENSG00000183153|Q8N144-2|GJD3 nc|ENSG00000183153|Q8N144-2|GJD3 nc|ENSG00000183153|Q8N144-2|GJD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.3193969726562 2 513.734354 1025.45416 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.49 103.99 104.99 -0.048737 0 0 0 0.97444 1 58041 58041 0.79363 0 1 75690 16444 50442 51545 88296 88296 -0.057552910860295015 WHCSWCCSPR 10 Unmodified _WHCSWCCSPR_ 0 0 0 REV__ENST00000593460.1_1_19:18121008-18121059:+|nuORF REV__ENST00000593460.1_1_19:18121008-18121059:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1264.60888671875 1 1264.48086 1263.47359 0.68077 0.00086082 -0.15713 -0.00019869 0.52364 0.00066213 1265.481311423537 60.948 0.081654 60.905 60.866 60.947 -0.04351 5 3 2 0 0 0 0.72607 1 33255 33255 0 0 1 1494400 + 75691 29193 50443 51546 88297 88297 -0.14761026129099264 WHDGRRQE 8 Unmodified _WHDGRRQE_ 0 0 0 nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 nc|ENSG00000109911|Q96EB1-3|ELP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2669067382812 2 542.257571 1082.50059 0.77471 0.00042009 2.7116 0.0014704 3.4863 0.0018905 542.2597957217608 57.683 0.23555 51.656 51.535 51.77 -6.0275 22 12 3 0 0 0 0.64853 1 36860 36860 21.747 3.6003 1 23037000 75692 16115 50444 51547 88298 88298 -0.0373613493038647 WHDHLARHRS 10 Unmodified _WHDHLARHRS_ 0 0 0 ZNF496|p.R533W|1|0.24|ENSG00000162714|chr1:247300686-247300686|G/A|missense_variant ZNF496|p.R533W|1|0.24|ENSG00000162714|chr1:247300686-247300686|G/A|missense_variant ZNF496|p.R533W|1|0.24|ENSG00000162714|chr1:247300686-247300686|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.8316650390625 2 657.831769 1313.64898 NaN NaN NaN NaN NaN NaN NaN 15.25 1 15.256 14.756 15.756 0.0057774 0 0 0 1.0061 1 7593 7593 0 0 1 75693 30213 50445 51548 88299 88299 0.004705960433057044 WHDQRWGTV 9 Unmodified _WHDQRWGTV_ 0 0 0 nc|ENSG00000179954|A1L4H1-2|SSC5D;ENSG00000179954|ENST00000389623|SSC5D nc|ENSG00000179954|A1L4H1-2|SSC5D nc|ENSG00000179954|A1L4H1-2|SSC5D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.2222595214844 3 395.524707 1183.55229 -0.11652 -4.6088E-05 3.2136 0.0012711 3.0971 0.001225 395.5257206438855 33.287 0.11215 33.316 33.274 33.386 0.028934 7 4 2 0 0 0 0.21819 1 17544 17544 1.0715 0.10919 1 602310 75694 8874 50446 51549 88300 88300 -0.03214391236497249 WHDYEYRRRRL 11 Unmodified _WHDYEYRRRRL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 825.4237060546875 2 825.424022 1648.83349 NaN NaN NaN NaN NaN NaN NaN 80.12 1 79.631 79.131 80.131 -0.48932 0 0 0 0.9435 1 43882 43882 0 0 1 + 75695 19506 50447 51550 88301 88301 0.03502739403165833 WHEQYEATHR 10 Unmodified _WHEQYEATHR_ 0 0 0 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 452.8750305175781 3 452.874175 1355.6007 NaN NaN NaN NaN NaN NaN NaN 0.01682 1 0.01682 -0.48318 0.51682 0 0 0 0 0.9997 1 7 7 0.69767 0.19171 1 + 75696 21176 50448 51551 88302 88302 -0.06287942387257317 WHEQYEATHR 10 Unmodified _WHEQYEATHR_ 0 0 0 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.874755859375 3 452.874175 1355.6007 NaN NaN NaN NaN NaN NaN NaN 0.03006 1 0.0079952 -0.492 0.508 -0.022065 0 0 0 1.0047 1 15 15 0.15932 0 1 + 75697 21176 50448 51551 88303 88303 -0.06287942387257317 WHFAEVPVL 9 Unmodified _WHFAEVPVL_ 0 0 0 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 ENSG00000083093|ENST00000261584|PALB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2927856445312 2 549.292559 1096.57057 0.12511 6.872E-05 1.178 0.00064708 1.3031 0.0007158 549.2929883967055 77.15 0.33941 77.2 77.033 77.372 0.05011 24 13 2 0 0 0 0.28047 1 42548 42548 18.135 0 1 6530200 75698 1357 50449 51552 88304 88304 0.026143506855078158 WHFDVPWSRF 10 Unmodified _WHFDVPWSRF_ 0 0 0 REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF REV__ENST00000492084.5_1_6:31654991-31670409:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.8308715820312 2 688.830372 1375.64619 NaN NaN NaN NaN NaN NaN NaN 63.855 1 63.855 63.355 64.355 0 0 0 0 1.0024 1 35613 35613 0.40072 0 1 + 75699 24168 50450 51553 88305 88305 -0.026606721342432138 WHFKCECQTV 10 Unmodified _WHFKCECQTV_ 0 0 0 REV__nc|ENSG00000134245|Q93097-2|WNT2B REV__nc|ENSG00000134245|Q93097-2|WNT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 427.8575134277344 3 427.523209 1279.5478 0.056919 2.4334E-05 0.011145 4.7646E-06 0.068064 2.9099E-05 427.5234426871041 31.83 0.29376 31.701 31.548 31.842 -0.12915 44 11 5 0 0 0 0.72196 1 16623 16623 0.15932 0 1 33040000 + 75700 19965 50451 51554 88306 88306 -0.08079359765929439 WHFKCECQTV 10 Unmodified _WHFKCECQTV_ 0 0 0 REV__nc|ENSG00000134245|Q93097-2|WNT2B REV__nc|ENSG00000134245|Q93097-2|WNT2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5228271484375 3 427.523209 1279.5478 -0.17902 -7.6534E-05 -0.23799 -0.00010175 -0.41701 -0.00017828 427.5232202448761 31.687 0.25809 31.717 31.564 31.822 0.030106 37 11 4 0 0 0 0.70951 1 16575 16575 0.77653 0.078866 1 10648000 + 75701 19965 50451 51554 88307 88307 -0.08079359765929439 WHFTHSHY 8 Unmodified _WHFTHSHY_ 0 0 0 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 ENSG00000086570|ENST00000261800|FAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7463989257812 2 557.746308 1113.47806 NaN NaN NaN NaN NaN NaN NaN 16.198 1 16.198 15.698 16.698 0 0 0 0 0.97444 1 7876 7876 0 0 1 75702 1438 50452 51555 88308 88308 -0.0741373432799719 WHGCPPHR 8 Unmodified _WHGCPPHR_ 0 0 0 nc|ENSG00000184164|Q6UXH1-6|CRELD2;ENST00000483652.5_1_22:50312390-50319315:+|nuORF nc|ENSG00000184164|Q6UXH1-6|CRELD2 nc|ENSG00000184164|Q6UXH1-6|CRELD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.2295227050781 2 495.229771 988.444988 0.52379 0.0002594 -0.23332 -0.00011555 0.29048 0.00014385 495.22956553753284 93.714 0.17903 93.257 93.154 93.333 -0.4574 11 7 2 0 0 0 0.81107 1 51227 51227 0 0 1 189420 75703 14133 50453 51556 88309 88309 -0.04969639651721991 WHGWSWSL 8 Unmodified _WHGWSWSL_ 0 0 0 REV__ENST00000379644.8_2_8:43046729-43048925:+|nuORF REV__ENST00000379644.8_2_8:43046729-43048925:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2823486328125 2 529.745776 1057.477 0.38659 0.0002048 0.69923 0.00037041 1.0858 0.00057521 529.7460966106511 88.78 0.30339 88.276 88.112 88.416 -0.50423 28 12 3 0 0 0 0.80676 1 48491 48491 2.5775 0 1 527840 + 75704 26295 50454 51557 88310 88310 -0.04943948696904954 WHHCDVCG 8 Unmodified _WHHCDVCG_ 0 0 0 ENSG00000109685|ENST00000508803|NSD2;nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF ENSG00000109685|ENST00000508803|NSD2 ENSG00000109685|ENST00000508803|NSD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.6787109375 2 478.678722 955.342891 NaN NaN NaN NaN NaN NaN NaN 12.775 1 12.785 12.285 13.285 0.0096512 0 0 0 0.97444 1 6299 6299 0 0 1 75705 2665 50455 51558 88311 88311 -0.13656673785635576 WHHFYRDRFPF 11 Unmodified _WHHFYRDRFPF_ 0 0 0 ENST00000497475.5_1_3:69245990-69247907:-|nuORF ENST00000497475.5_1_3:69245990-69247907:-|nuORF ENST00000497475.5_1_3:69245990-69247907:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.3899536132812 2 804.386377 1606.7582 NaN NaN NaN NaN NaN NaN NaN 49.486 1 49.486 48.986 49.986 0 0 0 0 0.94301 1 27233 27233 0.35063 0.35063 1 75706 14400 50456 51559 88312 88312 -0.0209081805724054 WHHHRFLA 8 Unmodified _WHHHRFLA_ 0 0 0 REV__nc|ENSG00000113389|P17342-2|NPR3 REV__nc|ENSG00000113389|P17342-2|NPR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2860107421875 2 552.285934 1102.55732 NaN NaN NaN NaN NaN NaN NaN 1.4305 1 1.4305 0.93046 1.9305 0 0 0 0 0.97444 1 698 698 0 0 1 + 75707 18864 50457 51560 88313 88313 0.010139574167851606 WHHRVFTPQP 10 Unmodified _WHHRVFTPQP_ 0 0 0 REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.83740234375 2 652.835988 1303.65742 1.8534 0.00121 0.52303 0.00034145 2.3764 0.0015514 652.8362678237706 92.502 0.39256 92.532 92.362 92.755 0.030197 39 14 3 0 0 0 0.64628 1 51515 51515 8.7454 0.58988 1 35002000 + 75708 28408 50458 51561 88314 88314 0.01774149959942406 WHIPGNHERY 10 Unmodified _WHIPGNHERY_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8791809082031 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 16.478 1 16.478 15.978 16.978 0 0 0 0 1.0047 1 8038 8038 0.15932 0 1 + 75709 23463 50459 51562 88315 88315 -0.025550307993853494 WHIPGNHERY 10 Unmodified _WHIPGNHERY_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.87939453125 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 82.385 1 82.385 81.885 82.885 0 0 0 0 1.0047 1 45707 45707 0.15932 0 1 + 75710 23463 50459 51562 88316 88316 -0.025550307993853494 WHIPGNHERY 10 Unmodified _WHIPGNHERY_ 0 0 0 REV__ENSG00000185015|ENST00000321764|CA13 REV__ENSG00000185015|ENST00000321764|CA13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8799438476562 3 436.879261 1307.61595 NaN NaN NaN NaN NaN NaN NaN 95.703 1 95.703 95.203 96.203 0 0 0 0 1.0047 1 52895 52895 0.15932 0 1 + 75711 23463 50459 51562 88317 88317 -0.025550307993853494 WHKLLRDE 8 Unmodified _WHKLLRDE_ 0 0 0 REV__ENSG00000180626|ENST00000575779|ZNF594 REV__ENSG00000180626|ENST00000575779|ZNF594 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.2006225585938 3 366.201452 1095.58253 NaN NaN NaN NaN NaN NaN NaN 4.9545 1 4.9545 4.4545 5.4545 0 0 0 0 0.97444 1 2383 2383 0.40072 0.16487 1 + 75712 23159 50460 51563 88318 88318 0.03855967428717122 WHMCIYKRM 9 Unmodified _WHMCIYKRM_ 0 0 0 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 ENSG00000059588|ENST00000040877|TARBP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2013854980469 3 423.201413 1266.58241 NaN NaN NaN NaN NaN NaN NaN 18.585 1 18.608 18.108 19.108 0.023106 0 0 0 0.8622 1 9328 9328 0 0 1 75713 816 50461 51564 88319 88319 -0.04021815158830577 WHQLWRREMVY 11 Unmodified _WHQLWRREMVY_ 0 0 0 ENST00000464589.1_1_21:28212595-28212700:-|nuORF ENST00000464589.1_1_21:28212595-28212700:-|nuORF ENST00000464589.1_1_21:28212595-28212700:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.2704467773438 3 535.269872 1602.78779 0.060277 3.2264E-05 2.1102 0.0011296 2.1705 0.0011618 535.2723501440789 55.363 0.27765 55.294 55.138 55.415 -0.068741 28 13 3 0 0 0 0.74157 1 30078 30078 0.094841 0.021578 1 2656500 75714 13720 50462 51565 88320 88320 0.010503778966267419 WHQSMFWSY 9 Unmodified _WHQSMFWSY_ 0 0 0 AIFM1|p.D485Y|1|0.61|ENSG00000156709|chrX:130131795-130131795|C/A|missense_variant AIFM1|p.D485Y|1|0.61|ENSG00000156709|chrX:130131795-130131795|C/A|missense_variant AIFM1|p.D485Y|1|0.61|ENSG00000156709|chrX:130131795-130131795|C/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.2703247070312 2 636.268758 1270.52296 NaN NaN NaN NaN NaN NaN NaN 44.985 1 44.985 44.485 45.485 0 0 0 0 0.84564 1 24500 24500 2.0598 0.40713 1 75715 13 50463 51566 88321 88321 -0.10147671576987705 WHRALLLL 8 Unmodified _WHRALLLL_ 0 0 0 REV__nc|ENSG00000124191|Q96NM4|TOX2 REV__nc|ENSG00000124191|Q96NM4|TOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.4717407226562 2 511.318912 1020.62327 0.25409 0.00012992 -1.1965 -0.00061178 -0.94238 -0.00048186 511.31825251407975 91.245 0.3027 90.75 90.586 90.889 -0.49457 21 12 2 0 0 0 0.80311 1 49934 49934 4.756 1.4747 1 523220 + 75716 29614 50464 51567 88322 88322 0.11378353538987085 WHRFRRFHLG 10 Unmodified _WHRFRRFHLG_ 0 0 0 ENSG00000167685|ENST00000337080|ZNF444;nc|ENSG00000167685|Q8N0Y2-2|ZNF444;ENST00000587195.5_1_19:56657742-56667135:+|nuORF ENSG00000167685|ENST00000337080|ZNF444 ENSG00000167685|ENST00000337080|ZNF444 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 706.3839721679688 2 706.383971 1410.75339 NaN NaN NaN NaN NaN NaN NaN 107.36 1 107.31 106.81 107.81 -0.047607 0 0 0 1.0061 1 59481 59481 0 0 1 75717 7656 50465 51568 88323 88323 0.06444342590702945 WHSEFPKPQI 10 Unmodified _WHSEFPKPQI_ 0 0 0 nc|ENSG00000138496|Q8IXQ6|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6-3|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 nc|ENSG00000138496|Q8IXQ6|PARP9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.5507202148438 3 423.552262 1267.63496 0.41614 0.00017626 0.011652 4.935E-06 0.42779 0.00018119 423.55225787697003 14.699 0.10816 12.196 12.149 12.257 -2.5029 31 17 2 0 0 0 0.48505 1 7478 7478 10.899 0 1 3727800 75718 5062 50466 51569 88324 88324 0.011845057716755036 WHSLGEGH 8 Unmodified _WHSLGEGH_ 0 0 0 REV__ENSG00000215853|ENST00000316073|RPTN REV__ENSG00000215853|ENST00000316073|RPTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.2106018066406 2 461.711934 921.409314 -0.12328 -5.6918E-05 1.3608 0.00062829 1.2375 0.00057138 461.71261787161615 34.156 0.55177 34.156 34.084 34.636 0 42 28 2 0 0 0 8.7369 1 18197 18197 5.2307 0 1 4594800 + 75719 24347 50467 51570 88325 88325 -0.054533986277192525 WHSLKPEEEVD 11 Unmodified _WHSLKPEEEVD_ 0 0 0 ENSG00000143858|ENST00000367268|SYT2 ENSG00000143858|ENST00000367268|SYT2 ENSG00000143858|ENST00000367268|SYT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.8870544433594 3 456.885858 1367.63574 -0.3701 -0.00016909 1.8551 0.00084755 1.485 0.00067846 456.8869093305691 33.971 0.27252 33.78 33.617 33.89 -0.19131 22 10 3 0 0 0 0.71341 1 17711 17711 1.2148 0 1 2273500 75720 5561 50468 51571 88326 88326 -0.03336744369948974 WHSSKLYYF 9 Unmodified _WHSSKLYYF_ 0 0 0 REV__ENST00000427953.5_1_1:114466911-114471053:-|nuORF REV__ENST00000427953.5_1_1:114466911-114471053:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.8695373535156 3 410.869591 1229.58694 1.3358 0.00054885 -0.4826 -0.00019829 0.85322 0.00035056 410.86943377517326 20.974 0.236 18.281 18.148 18.384 -2.693 18 12 2 0 0 0 0.54444 1 11199 11199 2.7352 0 1 1907200 + 75721 26929 50469 51572 88327 88327 -0.018665681483980734 WHSTHLFSF 9 Unmodified _WHSTHLFSF_ 0 0 0 REV__ENST00000574671.5_1_17:79478712-79478850:-|nuORF REV__ENST00000574671.5_1_17:79478712-79478850:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.27685546875 2 581.277441 1160.54033 0.31696 0.00018424 -0.77124 -0.0004483 -0.45428 -0.00026406 581.2768587205084 99.988 0.14465 99.831 99.757 99.901 -0.1575 12 4 4 0 0 0 0.32235 1 54592 54592 16.942 3.4344 1 6350400 + 75722 29008 50470 51573 88328 88328 -0.033520079796517166 WHVHRVKY 8 Unmodified _WHVHRVKY_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2559814453125 2 562.809242 1123.60393 -0.16715 -9.4074E-05 -1.7573 -0.00098904 -1.9245 -0.0010831 562.808545509256 41.697 0.14221 41.39 41.333 41.475 -0.30682 8 6 2 0 0 0 8.7369 1 22101 22101 23.148 2.7339 1 3056900 + 75723 23345 50471 51574 88329 88329 0.047073972480802695 WHVHRVKY 8 Unmodified _WHVHRVKY_ 0 0 0 REV__ENSG00000183421|ENST00000332512|RIPK4 REV__ENSG00000183421|ENST00000332512|RIPK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.8087158203125 2 562.809242 1123.60393 0.6275 0.00035316 -3.4502 -0.0019418 -2.8227 -0.0015886 562.8069776889258 46.467 0.14913 41.386 41.331 41.48 -5.0805 25 17 2 0 0 0 0.63229 1 28728 28728 23.148 6.0355 1 88716000 + 75724 23345 50471 51574 88330 88330 0.047073972480802695 WHWHWRRRRRR 11 Unmodified _WHWHWRRRRRR_ 0 0 0 REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4922485351562 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 50.572 1 50.572 50.072 51.072 0 0 0 0 0.9435 1 27883 27883 0 0 1 + 75725 25514 50472 51575 88331 88331 0.1109858632171381 WHWHWRRRRRR 11 Unmodified _WHWHWRRRRRR_ 0 0 0 REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 894.4937133789062 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 38.881 1 38.893 38.393 39.393 0.011452 0 0 0 0.9435 1 20692 20692 0 0 1 + 75726 25514 50472 51575 88332 88332 0.1109858632171381 WHWHWRRRRRR 11 Unmodified _WHWHWRRRRRR_ 0 0 0 REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF REV__ENST00000321582.9_1_9:124855435-124855555:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 894.4942016601562 2 894.493773 1786.97299 NaN NaN NaN NaN NaN NaN NaN 58.489 1 52.415 51.915 52.915 -6.0745 0 0 0 0.9435 1 37478 37478 0 0 1 + 75727 25514 50472 51575 88333 88333 0.1109858632171381 WHYDYLLGH 9 Unmodified _WHYDYLLGH_ 0 0 0 TTC31|p.H77Y|1|0.12|ENSG00000115282|chr2:74490124-74490124|C/T|missense_variant TTC31|p.H77Y|1|0.12|ENSG00000115282|chr2:74490124-74490124|C/T|missense_variant TTC31|p.H77Y|1|0.12|ENSG00000115282|chr2:74490124-74490124|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2247924804688 2 602.282723 1202.55089 NaN NaN NaN NaN NaN NaN NaN 19.019 1 19.019 18.519 19.519 0 0 0 0 0.85737 1 9489 9489 0.6015 0.076735 1 75728 30202 50473 51576 88334 88334 -0.04228025325255658 WHYGRLTPF 9 Unmodified _WHYGRLTPF_ 0 0 0 REV__nc|ENSG00000136250|P28039-2|AOAH REV__nc|ENSG00000136250|P28039-2|AOAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.8047485351562 2 588.801083 1175.58761 0.15952 9.3925E-05 2.1373 0.0012584 2.2968 0.0013523 588.8024217189167 56.025 0.33456 50.104 49.893 50.227 -5.9211 40 19 3 0 0 0 0.047196 1 35642 35642 46.021 0.28107 1 43247000 + 75729 20151 50474 51577 88335 88335 0.0068427129131123365 WHYYRFRPRWN 11 Unmodified _WHYYRFRPRWN_ 0 0 0 REV__ENSG00000124140|ENST00000243964|SLC12A5;REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6 REV__ENSG00000124140|ENST00000243964|SLC12A5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 840.9170532226562 2 840.918375 1679.8222 NaN NaN NaN NaN NaN NaN NaN 99.504 1 99.468 98.968 99.968 -0.036301 0 0 0 0.9435 1 55263 55263 0 0 1 + 75730 19417;20452 50475 51578 88336 88336 0.009479620997353777 WIAIKKKKKK 10 Unmodified _WIAIKKKKKK_ 0 0 0 REV__ENST00000316399.10_1_11:15990515-15990713:-|nuORF REV__ENST00000316399.10_1_11:15990515-15990713:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.9389038085938 2 635.939725 1269.8649 NaN NaN NaN NaN NaN NaN NaN 21.483 1 21.497 20.997 21.997 0.013796 0 0 0 1.0061 1 11004 11004 0 0 1 + 75731 25472 50476 51579 88337 88337 0.24075964175244735 WIEGDKLYL 9 Unmodified _WIEGDKLYL_ 0 0 0 ENSG00000114113|ENST00000232217|RBP2 ENSG00000114113|ENST00000232217|RBP2 ENSG00000114113|ENST00000232217|RBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8033447265625 2 568.802957 1135.59136 0.84948 0.00048319 0.033598 1.9111E-05 0.88308 0.0005023 568.8027587080563 73.376 0.46208 72.9 72.63 73.092 -0.47588 65 20 4 0 0 0 0.21589 1 40204 40204 29.082 8.628 1 17262000 75732 3018 50477 51580 88338 88338 0.028988962745188473 WIETFDTGYY 10 Unmodified _WIETFDTGYY_ 0 0 0 REV__ENST00000480192.5_1_7:36375862-36407839:-|nuORF REV__ENST00000480192.5_1_7:36375862-36407839:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.7835693359375 2 647.784961 1293.55537 NaN NaN NaN NaN NaN NaN NaN 88.19 1 87.685 87.185 88.185 -0.50423 0 0 0 1.0024 1 48235 48235 0.40072 0 1 + 75733 26976 50478 51581 88339 88339 -0.07966605692990925 WIETVKAY 8 Unmodified _WIETVKAY_ 0 0 0 REV__ENSG00000109610|ENST00000382120|SOD3 REV__ENSG00000109610|ENST00000382120|SOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7714233398438 2 505.271293 1008.52803 -0.66933 -0.0003382 -0.41401 -0.00020919 -1.0833 -0.00054739 505.7720541383465 33.608 0.3568 33.448 33.196 33.553 -0.15918 34 14 3 0 0 0 0.78849 1 17467 17467 9.3474 2.9933 1 1937800 + 75734 18664 50479 51582 88340 88340 0.02410955557274974 WIETVKAY 8 Unmodified _WIETVKAY_ 0 0 0 REV__ENSG00000109610|ENST00000382120|SOD3 REV__ENSG00000109610|ENST00000382120|SOD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7714233398438 2 505.271293 1008.52803 -0.66933 -0.0003382 -0.41401 -0.00020919 -1.0833 -0.00054739 505.7720541383465 33.608 0.3568 33.448 33.196 33.553 -0.15918 34 14 3 0 0 0 8.7369 1 17467 17467 9.3474 2.9933 1 1937800 + 75735 18664 50479 51582 88341 88341 0.02410955557274974 WIFVHRRWFYW 11 Unmodified _WIFVHRRWFYW_ 0 0 0 REV__ENSG00000187688|ENST00000338560|TRPV2;REV__ENST00000441875.1_1_17:16330801-16331912:+|nuORF REV__ENSG00000187688|ENST00000338560|TRPV2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.4389038085938 2 848.438412 1694.86227 NaN NaN NaN NaN NaN NaN NaN 70.929 1 70.929 70.429 71.429 0 0 0 0 0.9435 1 39517 39517 0 0 1 + 75736 23650;27093 50480 51583 88342 88342 0.04263508770327462 WIGILTLYL 9 Unmodified _WIGILTLYL_ 0 0 0 nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB;nc|ENSG00000164535|Q8NCG7-3|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB nc|ENSG00000164535|Q8NCG7-4|DAGLB MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.328857421875 2 546.328611 1090.64267 1.1988 0.00065495 -1.0317 -0.00056366 0.1671 9.1292E-05 546.328122798926 94.355 0.28855 88.179 87.993 88.282 -6.1757 49 16 4 0 0 0 0.18465 1 62408 62408 24.674 6.5389 1 63057000 75737 7204 50481 51584 88343 88343 0.10097265039212289 WIGSTKAEAYI 11 Unmodified _WIGSTKAEAYI_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.5509338378906 3 413.552039 1237.63429 -0.54737 -0.00022637 -2.0181 -0.00083458 -2.5654 -0.0010609 413.55143086394156 19.429 0.15098 19.429 19.34 19.491 0 15 11 2 0 0 0 0.71341 1 9708 9708 1.2148 0.51716 1 747410 + 75738 22721 50482 51585 88344 88344 0.02497666331964865 WIGSTKAEAYI 11 Unmodified _WIGSTKAEAYI_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 413.552039 1237.63429 -0.54737 -0.00022637 -2.0181 -0.00083458 -2.5654 -0.0010609 413.55143086394156 19.429 0.15098 19.429 19.34 19.491 0 0.19995 0.00035275 NaN 1.2148 15 11 2 NaN NaN NaN NaN 0 NaN NaN 0 747410 + 75739 22721 50482 51585 0.02497666331964865 WIGSTKAEAYI 11 Unmodified _WIGSTKAEAYI_ 0 0 0 REV__ENSG00000173302|ENST00000309926|GPR148 REV__ENSG00000173302|ENST00000309926|GPR148 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 413.552039 1237.63429 -0.068327 -2.8257E-05 -3.7949 -0.0015694 -3.8632 -0.0015976 413.55086097276137 19.022 0.058159 19.029 18.989 19.047 0.0068417 -0.19995 -0.0018516 NaN 1.2148 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 465890 + 75740 22721 50482 51585 0.02497666331964865 WIILVKTKF 9 Unmodified _WIILVKTKF_ 0 0 0 REV__ENST00000460006.5_1_20:5171123-5171372:+|nuORF REV__ENST00000460006.5_1_20:5171123-5171372:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.2455139160156 3 383.24611 1146.7165 NaN NaN NaN NaN NaN NaN NaN 92.772 1 92.315 91.815 92.815 -0.4574 0 0 0 0.85852 1 50702 50702 0.20686 0.066965 1 + 75741 27289 50483 51586 88345 88345 0.14901233201567265 WIIVLCDP 8 Unmodified _WIIVLCDP_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.7543640136719 2 479.756964 957.499375 NaN NaN NaN NaN NaN NaN NaN 1.5733 1 1.5733 1.0733 2.0733 0 0 0 0 0.97444 1 772 772 0.79363 0.10326 1 + 75742 21413 50484 51587 88346 88346 0.018925146564811257 WILFIVLLIIF 11 Unmodified _WILFIVLLIIF_ 0 0 0 REV__ENSG00000130962|ENST00000378628|PRRG1 REV__ENSG00000130962|ENST00000378628|PRRG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 695.4487915039062 2 695.44906 1388.88357 NaN NaN NaN NaN NaN NaN NaN 104.15 1 104.1 103.6 104.6 -0.048737 0 0 0 0.9435 1 57826 57826 0 0 1 + 75743 19759 50485 51588 88347 88347 0.20468081026456275 WIMLILVG 8 Unmodified _WIMLILVG_ 0 0 0 ENST00000489322.5_1_22:24226412-24227033:+|nuORF;ENST00000461809.5_1_22:24225898-24227033:+|nuORF;nc|ENSG00000133460|Q9BYW1|SLC2A11;ENSG00000133460|ENST00000316185|SLC2A11;nc|ENSG00000133460|Q9BYW1-4|SLC2A11 ENST00000489322.5_1_22:24226412-24227033:+|nuORF ENST00000489322.5_1_22:24226412-24227033:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.786376953125 2 472.785524 943.556496 1.7369 0.00082117 0.36333 0.00017178 2.1002 0.00099295 472.7854770110358 93.322 0.38585 93.345 93.16 93.546 0.02298 29 14 3 0 0 0 0.81107 1 51899 51899 0 0 1 3429900 75744 4517 50486 51589 88348 88348 0.0824598193289603 WIMNALHSL 9 Unmodified _WIMNALHSL_ 0 0 0 ENSG00000183024|ENST00000328890|OR1G1 ENSG00000183024|ENST00000328890|OR1G1 ENSG00000183024|ENST00000328890|OR1G1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3033447265625 2 542.784044 1083.55354 0.1812 9.8352E-05 -4.0258 -0.0021851 -3.8446 -0.0020868 542.7838690318946 53.141 0.27831 53.078 52.919 53.198 -0.063423 21 13 2 0 0 0 0.18521 1 28783 28783 11.64 0.81637 1 1082500 75745 9110 50487 51590 88349 88349 0.01510106808063938 WIMQLTRCI 9 Unmodified _WIMQLTRCI_ 0 0 0 REV__ENST00000508591.5_1_4:84374743-84374815:-|nuORF REV__ENST00000508591.5_1_4:84374743-84374815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.5375061035156 3 388.540312 1162.59911 -0.38488 -0.00014954 -2.225 -0.00086449 -2.6098 -0.001014 388.8741831500342 23.992 0.26717 23.992 23.832 24.099 0 25 12 3 0 0 0 0.58466 1 12218 12218 1.1933 0 1 498940 + 75746 28118 50488 51591 88350 88350 0.024310089987920946 WIPEGEKV 8 Unmodified _WIPEGEKV_ 0 0 0 ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR ENSG00000146648|ENST00000275493|EGFR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2562866210938 2 479.255643 956.496732 -0.19947 -9.5595E-05 1.1965 0.00057343 0.99704 0.00047784 479.25625179573603 31.872 0.43817 31.902 31.67 32.109 0.030106 37 19 3 0 0 0 0.79669 1 16791 16791 8.5933 0.68312 1 14794000 75747 5788 50489 51592 88351 88351 0.016743825231969822 WIPKARLLL 9 Unmodified _WIPKARLLL_ 0 0 0 ENST00000259253.10_1_2:128913071-128913131:+|nuORF ENST00000259253.10_1_2:128913071-128913131:+|nuORF ENST00000259253.10_1_2:128913071-128913131:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.3640747070312 2 555.363319 1108.71209 NaN NaN NaN NaN NaN NaN NaN 34.415 1 34.442 33.942 34.942 0.027401 0 0 0 0.85798 1 18143 18143 0.52476 0 1 75748 11213 50490 51593 88352 88352 0.16207768778667742 WIPTFFSTQY 10 Unmodified _WIPTFFSTQY_ 0 0 0 nc|ENSG00000211452|P49895-3|DIO1;nc|ENSG00000211452|P49895-7|DIO1;nc|ENSG00000211452|P49895-5|DIO1;nc|ENSG00000211452|P49895-4|DIO1;ENSG00000211452|ENST00000361921|DIO1 nc|ENSG00000211452|P49895-3|DIO1 nc|ENSG00000211452|P49895-3|DIO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.3150634765625 2 645.313689 1288.61282 NaN NaN NaN NaN NaN NaN NaN 17.969 1 17.975 17.475 18.475 0.0060463 0 0 0 1.0024 1 9087 9087 0.40072 0 1 75749 10407 50491 51594 88353 88353 -0.01993718696758151 WIQDEIVLQVF 11 Unmodified _WIQDEIVLQVF_ 0 0 0 ENSG00000228486|ENST00000627399|C2orf92 ENSG00000228486|ENST00000627399|C2orf92 ENSG00000228486|ENST00000627399|C2orf92 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.8751220703125 2 695.374278 1388.734 0.187 0.00013003 0.16529 0.00011494 0.35229 0.00024497 695.3746166366205 66.804 0.24339 66.321 66.216 66.459 -0.48323 23 11 3 0 0 0 0.68427 1 36475 36475 5.7319 0 1 1732500 75750 10602 50492 51595 88354 88354 0.055184839458888746 WIRERRWQILA 11 Unmodified _WIRERRWQILA_ 0 0 0 REV__ENSG00000165238|ENST00000427277|WNK2 REV__ENSG00000165238|ENST00000427277|WNK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 763.9388427734375 2 763.938776 1525.863 NaN NaN NaN NaN NaN NaN NaN 90.379 1 90.379 89.879 90.879 0 0 0 0 0.9435 1 50002 50002 0 0 1 + 75751 21995 50493 51596 88355 88355 0.12110303419376578 WIRSGGGVL 9 Unmodified _WIRSGGGVL_ 0 0 0 ENSG00000176208|ENST00000321990|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 ENSG00000176208|ENST00000321990|ATAD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 472.7698669433594 2 472.769252 943.52395 NaN NaN NaN NaN NaN NaN NaN 0.21088 1 0.13696 -0.36304 0.63696 -0.07392 0 0 0 0.8622 1 110 110 0 0 1 75752 8575 50494 51597 88356 88356 0.04992910854252841 WISKLPHF 8 Unmodified _WISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.2905883789062 2 514.28982 1026.56509 0.58458 0.00030064 -0.39727 -0.00020431 0.18731 9.6331E-05 514.2895723052429 67.36 0.35316 67.378 67.161 67.514 0.018036 42 17 3 0 0 0 0.26159 1 36927 36927 60.39 39.518 1 9211100 75753 9762 50495 51598 88357 88357 0.05286671893713901 WISKLPHF 8 Unmodified _WISKLPHF_ 0 0 0 ENSG00000196116|ENST00000355295|TDRD7;nc|ENSG00000196116|Q8NHU6-2|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 ENSG00000196116|ENST00000355295|TDRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.2901000976562 2 514.28982 1026.56509 0.49403 0.00025407 0.52429 0.00026964 1.0183 0.00052371 514.2900873617496 92.781 0.53668 86.605 86.252 86.788 -6.1757 63 33 2 0 0 0 0.37649 3 61169 61169;61293;61420 46.921 33.413 1 50254000 75754 9762 50495 51598 88358;88359;88360 88358 0.05286671893713901 WISRRKNIM 9 Unmodified _WISRRKNIM_ 0 0 0 REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF REV__ENST00000526129.5_1_1:76199287-76200536:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3424072265625 2 602.342592 1202.67063 0.32887 0.00019809 1.6119 0.00097095 1.9408 0.001169 602.3431462400612 101.68 0.067101 101.56 101.52 101.59 -0.11613 6 2 3 0 0 0 0.61381 1 55499 55499 0.52476 0 1 449450 + 75755 28363 50496 51599 88361 88361 0.07740264747667425 WITGWGML 8 Unmodified _WITGWGML_ 0 0 0 nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P nc|ENSG00000276717|A8MTI9|PRSS47P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.2427368164062 2 482.241481 962.468409 NaN NaN NaN NaN NaN NaN NaN 65.995 1 65.995 65.495 66.495 0 0 0 0 0.97444 1 36809 36809 0.79363 0 1 75756 16607 50497 51600 88362 88362 -0.014326386577408812 WIWQVSSGQ 9 Unmodified _WIWQVSSGQ_ 0 0 0 REV__ENST00000267103.9_1_12:53699839-53700033:+|nuORF REV__ENST00000267103.9_1_12:53699839-53700033:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.2048950195312 3 364.182058 1089.52434 -0.13586 -4.9479E-05 0.37988 0.00013835 0.24402 8.8867E-05 364.18225676464294 31.635 0.23511 31.635 31.523 31.758 0 26 11 3 0 0 0 0.21874 1 16447 16447 1.1933 0 1 2615200 + 75757 25107 50498 51601 88363 88363 -0.01683714216574117 WIYNVTYLF 9 Unmodified _WIYNVTYLF_ 0 0 0 REV__ENST00000549537.6_2_12:112371794-112450827:-|nuORF REV__ENST00000549537.6_2_12:112371794-112450827:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8128051757812 2 609.813325 1217.6121 NaN NaN NaN NaN NaN NaN NaN 67.278 1 67.278 66.778 67.778 0 0 0 0 0.84369 1 37519 37519 2.3027 0 1 + 75758 24008 50499 51602 88364 88364 0.011994866541499505 WIYVRKYQSR 10 Unmodified _WIYVRKYQSR_ 0 0 0 ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 ENSG00000168216|ENST00000649934|LMBRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.2574768066406 3 466.926211 1397.7568 0.7468 0.0003487 -1.1511 -0.00053747 -0.40428 -0.00018877 466.9257534813062 57.058 0.27888 57.058 56.877 57.156 0 33 11 4 0 0 0 0.7191 1 31802 31802 0.77653 0.27058 1 3653400 75759 7730 50500 51603 88365 88365 0.07383547854033168 WKAPHVAKYF 10 Unmodified _WKAPHVAKYF_ 0 0 0 nc|ENSG00000188672|P18577-9|RHCE;nc|ENSG00000188672|P18577-4|RHCE;nc|ENSG00000188672|P18577-10|RHCE;nc|ENSG00000188672|P18577-11|RHCE;ENSG00000188672|ENST00000294413|RHCE nc|ENSG00000188672|P18577-9|RHCE nc|ENSG00000188672|P18577-9|RHCE MSMS AL20221201_MKP_PDAC_01 4 416.2281799316406 3 416.229231 1245.66586 NaN NaN NaN NaN NaN NaN NaN 43.756 1 38.991 38.491 39.491 -4.7648 0 0 0 0.94046 1 26617 26617 6.1918 3.7571 1 75760 9683 50501 51604 88366 88366 0.05285703876552361 WKAWPLLL 8 Unmodified _WKAWPLLL_ 0 0 0 ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF ENSG00000164880|ENST00000404767|INTS1 ENSG00000164880|ENST00000404767|INTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.3121948242188 2 513.810388 1025.60622 -0.12689 -6.5197E-05 2.5196 0.0012946 2.3927 0.0012294 514.3128731419769 51.305 0.19133 50.891 50.738 50.93 -0.41351 22 9 3 0 0 0 0.74163 1 27644 27644 13.508 0 1 2191200 75761 7256 50502 51605 88367 88367 0.0944443293317363 WKDIIHNPQ 9 Unmodified _WKDIIHNPQ_ 0 0 0 nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000481797.5_1_1:153721154-153726193:+|nuORF nc|ENSG00000143624|Q68E01-3|INTS3 nc|ENSG00000143624|Q68E01-3|INTS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8895568847656 3 384.204974 1149.59309 NaN NaN NaN NaN NaN NaN NaN 32.282 1 32.153 31.653 32.653 -0.12915 0 0 0 0.83329 1 16803 16803 2.086 1.0145 1 75762 5537 50503 51606 88368 88368 0.024279500831198675 WKEARCQPAF 10 Unmodified _WKEARCQPAF_ 0 0 0 ENST00000441492.1_1_X:133678581-133679990:-|nuORF ENST00000441492.1_1_X:133678581-133679990:-|nuORF ENST00000441492.1_1_X:133678581-133679990:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.3038940429688 2 618.303133 1234.59171 0.53852 0.00033297 -0.42368 -0.00026196 0.11484 7.1008E-05 618.3027543629094 89.234 0.27359 88.729 88.589 88.862 -0.50423 18 11 2 0 0 0 0.60623 1 48780 48780 10.824 1.4408 1 529460 75763 13397 50504 51607 88369 88369 -0.01620007277279001 WKESILSI 8 Unmodified _WKESILSI_ 0 0 0 REV__nc|ENSG00000166130|Q70UQ0|IKBIP REV__nc|ENSG00000166130|Q70UQ0|IKBIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 488.2798767089844 2 488.279118 974.543683 0.81826 0.00039954 0.90441 0.00044161 1.7227 0.00084115 488.2795086094644 73.035 0.28815 72.559 72.386 72.674 -0.47588 19 12 2 0 0 0 0.63229 1 39940 39940 23.148 0 1 898150 + 75764 29760 50505 51608 88370 88370 0.055392420743373805 WKGIGHVI 8 Unmodified _WKGIGHVI_ 0 0 0 ENSG00000005007|ENST00000262803|UPF1;nc|ENSG00000005007|Q92900|UPF1 ENSG00000005007|ENST00000262803|UPF1 ENSG00000005007|ENST00000262803|UPF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.2694702148438 2 455.268887 908.523222 NaN NaN NaN NaN NaN NaN NaN 71.411 1 71.411 70.911 71.911 0 0 0 0 0.97444 1 39777 39777 0.69038 0 1 75765 293 50506 51609 88371 88371 0.06530116205192371 WKGNCYSL 8 Unmodified _WKGNCYSL_ 0 0 0 REV__nc|ENSG00000042781|O75445-3|USH2A REV__nc|ENSG00000042781|O75445-3|USH2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.72509765625 2 485.726195 969.437837 NaN NaN NaN NaN NaN NaN NaN 70.872 1 70.395 69.895 70.895 -0.47735 0 0 0 0.97444 1 38782 38782 2.5775 1.7838 1 + 75766 17207 50507 51610 88372 88372 -0.048104170427905046 WKHWHQLK 8 Unmodified _WKHWHQLK_ 0 0 0 ENST00000459737.5_1_14:56128304-56130745:+|nuORF ENST00000459737.5_1_14:56128304-56130745:+|nuORF ENST00000459737.5_1_14:56128304-56130745:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 387.8940734863281 3 388.213804 1161.61958 1.4874 0.00057741 1.4966 0.000581 2.984 0.0011584 388.21445335296 94.036 0.25745 87.86 87.703 87.96 -6.1757 32 14 3 0 0 0 8.7369 1 62276 62276 3.2813 3.2813 1 15848000 75767 13632 50508 51611 88373 88373 0.045236837651145834 WKIVLSHQ 8 Unmodified _WKIVLSHQ_ 0 0 0 REV__ENSG00000180530|ENST00000318948|NRIP1 REV__ENSG00000180530|ENST00000318948|NRIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7931823730469 2 505.792727 1009.5709 1.0819 0.00054722 0.59544 0.00030117 1.6773 0.00084838 505.79316017281553 91.788 0.60169 85.613 85.252 85.853 -6.1757 79 33 3 0 0 0 0.50673 1 60776 60776 34.102 0 1 37822000 + 75768 23155 50509 51612 88374 88374 0.06649770405374511 WKKDRMWRKNR 11 Unmodified _WKKDRMWRKNR_ 0 0 0 CON__Q2KIG3 CON__Q2KIG3 CON__Q2KIG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 802.9408569335938 2 802.44116 1602.86777 1.9986 0.0016038 -2.184 -0.0017525 -0.18533 -0.00014872 802.4396287105493 100.88 0.11291 94.707 94.635 94.748 -6.1757 15 6 3 0 0 0 0.71341 1 67575 67575 2.9952 1.8019 1 27841000 + 75769 191 50510 51613 88375 88375 0.0904486429044482 WKKEFRSIK 9 Unmodified _WKKEFRSIK_ 0 0 0 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 ENSG00000158480|ENST00000289431|SPATA2 MSMS AL20221201_MKP_PDAC_01 4 611.357666015625 2 611.358765 1220.70298 NaN NaN NaN NaN NaN NaN NaN 94.708 1 88.532 88.032 89.032 -6.1757 0 0 0 0.61214 1 62732 62732 12.241 2.1667 1 75770 6590 50511 51614 88376 88376 0.10145375422325742 WKKGVGKG 8 Unmodified _WKKGVGKG_ 0 0 0 ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2 ENSG00000089057|ENST00000338244|SLC23A2 ENSG00000089057|ENST00000338244|SLC23A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 859.5172119140625 1 859.514848 858.507572 1.3982 0.0012018 0.58667 0.00050425 1.9849 0.001706 859.5146901594643 105.46 0.14565 99.28 99.213 99.359 -6.1757 54 29 2 0 0 0 0.81107 1 70637 70637 0 0 1 19217000 75771 1512 50512 51615 88377 88377 0.0726582968815137 WKKVLFRLRLI 11 Unmodified _WKKVLFRLRLI_ 0 0 0 REV__ENSG00000160299|ENST00000359568|PCNT REV__ENSG00000160299|ENST00000359568|PCNT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 736.4850463867188 2 736.484831 1470.95511 NaN NaN NaN NaN NaN NaN NaN 103.7 1 103.65 103.15 104.15 -0.047928 0 0 0 0.9435 1 57588 57588 0 0 1 + 75772 21534 50513 51616 88378 88378 0.2384701350370051 WKKVTNDVCSE 11 Unmodified _WKKVTNDVCSE_ 0 0 0 ENSG00000119681|ENST00000261978|LTBP2 ENSG00000119681|ENST00000261978|LTBP2 ENSG00000119681|ENST00000261978|LTBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.879150390625 3 436.879939 1307.61799 0.29851 0.00013041 -0.22463 -9.8136E-05 0.073876 3.2275E-05 436.8792355288105 102.88 1.1032 102.77 102.27 103.37 -0.10458 74 52 2 0 0 0 0.74046 1 56187 56187 0.45452 0.1855 1 289540 75773 3452 50514 51617 88379 88379 -0.02351782896471377 WKLCWMPWRNK 11 Unmodified _WKLCWMPWRNK_ 0 0 0 ENSG00000134207|ENST00000610222|SYT6 ENSG00000134207|ENST00000610222|SYT6 ENSG00000134207|ENST00000610222|SYT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 774.3945922851562 2 774.391759 1546.76896 -0.29582 -0.00022908 3.9534 0.0030615 3.6576 0.0028324 774.395603621558 31.673 0.15781 31.673 31.6 31.758 0 17 7 3 0 0 0 0.6889 1 16516 16516 5.2969 2.7984 1 1365400 75774 4568 50515 51618 88380 88380 0.017451250012072705 WKLGRGLG 8 Unmodified _WKLGRGLG_ 0 0 0 ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.7665710449219 2 443.766512 885.518471 0.69012 0.00030625 1.295 0.00057466 1.9851 0.00088091 443.7669305322806 78.48 0.60854 78.532 78.302 78.911 0.052452 45 24 3 0 0 0 0.80722 1 43290 43290 2.3027 0 1 4342700 75775 13103 50516 51619 88381 88381 0.07113232062431507 WKLGRGLG 8 Unmodified _WKLGRGLG_ 0 0 0 ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF ENST00000420702.5_2_6:136571178-136571277:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 443.766512 885.518471 0.31187 0.0001384 2.0947 0.00092955 2.4066 0.0010679 443.76736876562745 78.891 0.4644 78.891 78.698 79.162 0 0.17965 0.00039298 NaN 2.3027 28 21 2 NaN NaN NaN NaN 0 NaN NaN 0 762430 75776 13103 50516 51619 0.07113232062431507 WKLISENAQCV 11 Unmodified _WKLISENAQCV_ 0 0 0 ENST00000480058.5_1_6:4064966-4065116:+|nuORF ENST00000480058.5_1_6:4064966-4065116:+|nuORF ENST00000480058.5_1_6:4064966-4065116:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8880920410156 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 106.67 1 100.5 99.995 101 -6.1757 0 0 0 0.94184 1 71392 71392 0.40827 0 1 75777 14053 50517 51620 88382 88382 0.010571113458127002 WKLPHRRYIPW 11 Unmodified _WKLPHRRYIPW_ 0 0 0 REV__ENSG00000114902|ENST00000619898|SPCS1 REV__ENSG00000114902|ENST00000619898|SPCS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 776.438720703125 2 776.438412 1550.86227 NaN NaN NaN NaN NaN NaN NaN 83.011 1 82.514 82.014 83.014 -0.49751 0 0 0 0.9435 1 45442 45442 0 0 1 + 75778 18940 50518 51621 88383 88383 0.10887508770315435 WKLQWMLILLR 11 Unmodified _WKLQWMLILLR_ 0 0 0 ENST00000272793.9_1_2:170814982-170843277:+|nuORF ENST00000272793.9_1_2:170814982-170843277:+|nuORF ENST00000272793.9_1_2:170814982-170843277:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 750.4515991210938 2 750.4496 1498.88465 3.0524 0.0022907 -0.47806 -0.00035876 2.5744 0.0019319 750.4491633692663 97.11 1.1385 97.103 96.772 97.911 -0.007019 152 42 5 0 0 0 0.74203 1 54178 54178 0.30703 0.30703 1 54465000 75779 11374 50519 51622 88384 88384 0.15515972123716892 WKLTTVKH 8 Unmodified _WKLTTVKH_ 0 0 0 REV__ENST00000462436.1_1_7:97484616-97487685:-|nuORF REV__ENST00000462436.1_1_7:97484616-97487685:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8016052246094 2 506.800552 1011.58655 0.20838 0.00010561 1.6876 0.00085529 1.896 0.0009609 506.80118371574116 38.209 0.24543 38.226 38.09 38.336 0.01704 18 10 3 0 0 0 0.80383 1 20294 20294 4.3292 2.0265 1 4398600 + 75780 27339 50520 51623 88385 88385 0.08122056922411502 WKLYDTDGY 9 Unmodified _WKLYDTDGY_ 0 0 0 REV__ENST00000585246.5_1_6:32123472-32133959:+|nuORF REV__ENST00000585246.5_1_6:32123472-32133959:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3309326171875 2 580.766571 1159.51859 0.8719 0.00050637 0.17968 0.00010435 1.0516 0.00061072 581.2671836281747 80.611 0.12102 80.118 80.031 80.152 -0.49247 6 4 2 0 0 0 0.58466 1 44110 44110 2.3027 0 1 333270 + 75781 24369 50521 51624 88386 88386 -0.05478857518892255 WKMAGRLL 8 Unmodified _WKMAGRLL_ 0 0 0 REV__ENST00000547404.1_1_12:105508200-105512263:+|nuORF REV__ENST00000547404.1_1_12:105508200-105512263:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.784423828125 2 487.783847 973.553142 NaN NaN NaN NaN NaN NaN NaN 90.978 1 90.978 90.478 91.478 0 0 0 0 0.97444 1 50320 50320 0 0 1 + 75782 28670 50522 51625 88387 88387 0.0653073187887685 WKNDFIHL 8 Unmodified _WKNDFIHL_ 0 0 0 ENST00000520378.1_1_5:150518646-150537284:-|nuORF ENST00000520378.1_1_5:150518646-150537284:-|nuORF ENST00000520378.1_1_5:150518646-150537284:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.8680725097656 3 358.190665 1071.55016 -0.58918 -0.00021104 -0.64446 -0.00023084 -1.2336 -0.00044188 358.1901894019547 16.548 0.12706 16.548 16.514 16.641 0 48 34 2 0 0 0 8.7369 1 8112 8112 6.7232 1.8262 1 885140 75783 14725 50523 51626 88388 88388 0.017251800257099603 WKNFVDTVRD 10 Unmodified _WKNFVDTVRD_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 427.5693359375 3 427.219172 1278.63569 0.79516 0.00033971 -2.5367 -0.0010837 -1.7415 -0.00074401 427.2179951067801 43.808 0.36126 39.044 38.843 39.204 -4.7648 28 22 2 0 0 0 0.23356 1 26705 26705 11.518 0 1 9102800 75784 2971 50524 51627 88389 88389 0.007513004207112317 WKPRRRSPP 9 Unmodified _WKPRRRSPP_ 0 0 0 ENST00000444757.5_3_6:33168321-33168510:+|nuORF ENST00000444757.5_3_6:33168321-33168510:+|nuORF ENST00000444757.5_3_6:33168321-33168510:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.9153747558594 3 393.900108 1178.67849 0.50175 0.00019764 1.1941 0.00047035 1.6958 0.00066799 393.9008115904672 68.889 0.21399 68.914 68.77 68.984 0.025154 16 9 2 0 0 0 0.21846 1 37873 37873 2.086 0 1 1064600 75785 13441 50525 51628 88390 88390 0.09630160059464288 WKQCKDCFYSL 11 Unmodified _WKQCKDCFYSL_ 0 0 0 REV__ENSG00000149474|ENST00000688188|KAT14 REV__ENSG00000149474|ENST00000688188|KAT14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 474.2193603515625 3 474.217786 1419.63153 0.65726 0.00031168 1.7524 0.00083102 2.4097 0.0011427 474.2187497399108 67.598 0.33578 67.116 66.963 67.299 -0.48218 30 14 3 0 0 0 0.71341 1 36935 36935 2.6312 1.5215 1 2028900 + 75786 20997 50526 51629 88391 88391 -0.06150248388848922 WKQFQSFCC 9 Unmodified _WKQFQSFCC_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-7|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7518920898438 2 588.751887 1175.48922 NaN NaN NaN NaN NaN NaN NaN 18.996 1 18.996 18.496 19.496 0 0 0 0 0.8622 1 9477 9477 0 0 1 75787 394 50527 51630 88392 88392 -0.09150416340366974 WKQQHRKWMRV 11 Unmodified _WKQQHRKWMRV_ 0 0 0 REV__PRSS23|p.Q328H|1|0.03|ENSG00000150687|chr11:86808627-86808627|G/T|missense_variant REV__PRSS23|p.Q328H|1|0.03|ENSG00000150687|chr11:86808627-86808627|G/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.6232299804688 3 528.289378 1581.8463 0.77182 0.00040774 -2.2703 -0.0011994 -1.4985 -0.00079166 528.2884882179355 64.47 0.30801 64.459 64.298 64.606 -0.010536 44 15 4 0 0 0 0.74046 1 35283 35283 0.45452 0.046251 1 10163000 + 75788 30081 50528 51631 88393 88393 0.0786547926172716 WKQVDQFL 8 Unmodified _WKQVDQFL_ 0 0 0 nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG nc|ENSG00000042832|P01266-2|TG nc|ENSG00000042832|P01266-2|TG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2825927734375 2 532.282192 1062.54983 -0.061197 -3.2574E-05 -1.6372 -0.00087146 -1.6984 -0.00090403 532.281256279975 38.758 0.26737 38.471 38.363 38.63 -0.28687 31 12 3 0 0 0 0.76266 1 20493 20493 11.64 1.5664 1 13004000 75789 666 50529 51632 88394 88394 0.021057603058579843 WKRCGLERWG 10 Unmodified _WKRCGLERWG_ 0 0 0 REV__ENST00000593586.1_1_19:40723001-40723700:-|nuORF REV__ENST00000593586.1_1_19:40723001-40723700:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8883056640625 3 430.888991 1289.64514 NaN NaN NaN NaN NaN NaN NaN 107.06 1 100.89 100.39 101.39 -6.1757 0 0 0 0.99091 1 71632 71632 0.69767 0 1 + 75790 29194 50530 51633 88395 88395 0.011907902252232816 WKRLLFRKRRP 11 Unmodified _WKRLLFRKRRP_ 0 0 0 REV__ENSG00000023171|ENST00000635736|GRAMD1B REV__ENSG00000023171|ENST00000635736|GRAMD1B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8167114257812 3 519.331794 1554.97355 -0.59755 -0.00031033 -0.63907 -0.00033189 -1.2366 -0.00064222 519.3325245037059 103.54 0.090179 103.5 103.43 103.52 -0.04792 7 3 3 0 0 0 0.30605 1 57474 57474 0 0 1 1132900 + 75791 17115 50531 51634 88396 88396 0.21826568198230234 WKRRTRAAIPF 11 Unmodified _WKRRTRAAIPF_ 0 0 0 ENST00000392872.7_1_12:104359681-104370748:+|nuORF ENST00000392872.7_1_12:104359681-104370748:+|nuORF ENST00000392872.7_1_12:104359681-104370748:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.9465942382812 3 467.945717 1400.81532 NaN NaN NaN NaN NaN NaN NaN 18.045 1 18.059 17.559 18.559 0.013865 0 0 0 0.94337 1 9017 9017 0.094841 0 1 75792 12686 50532 51635 88397 88397 0.13094649219169696 WKRSRRRRRKF 11 Unmodified _WKRSRRRRRKF_ 0 0 0 REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF REV__ENST00000403909.2_1_6:139660476-139660551:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.4981079101562 2 816.500733 1630.98691 NaN NaN NaN NaN NaN NaN NaN 100.19 1 100.19 99.695 100.69 0 0 0 0 0.9435 1 55300 55300 0 0 1 + 75793 26634 50533 51636 88398 88398 0.19665819030160492 WKRWRRCWEAA 11 Unmodified _WKRWRRCWEAA_ 0 0 0 ENST00000415950.4_2_19:35528037-35528250:+|nuORF ENST00000415950.4_2_19:35528037-35528250:+|nuORF ENST00000415950.4_2_19:35528037-35528250:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 774.3954467773438 2 774.393679 1546.7728 0.96899 0.00075038 0.63023 0.00048805 1.5992 0.0012384 774.3940318655356 36.759 0.26019 32.475 32.371 32.632 -4.2835 37 15 3 0 0 0 0.65846 1 21483 21483 8.1555 3.2585 1 8925600 75794 13034 50534 51637 88399 88399 0.0212893081927632 WKSMCFDTEG 10 Unmodified _WKSMCFDTEG_ 0 0 0 REV__ENSG00000260903|ENST00000562532|XKR7 REV__ENSG00000260903|ENST00000562532|XKR7 MSMS AL20221201_MKP_PDAC_01 4 401.4985961914062 3 401.83182 1202.47363 NaN NaN NaN NaN NaN NaN NaN 22.816 1 20.038 19.538 20.538 -2.7784 0 0 0 0.99248 1 12298 12298 0.62683 0 1 + 75795 24578 50535 51638 88400 88400 -0.11950747648097604 WKSRHDLL 8 Unmodified _WKSRHDLL_ 0 0 0 REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF REV__ENST00000508976.5_1_6:97702357-97730353:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3558959960938 2 527.793258 1053.57196 1.9981 0.0010546 0.80915 0.00042706 2.8072 0.0014816 527.7934760500824 100.15 0.13741 100.11 100.05 100.18 -0.036301 10 4 3 0 0 0 8.7369 1 55663 55663 2.5775 0 1 8771000 + 75796 20821 50536 51639 88401 88401 0.04731984774275588 WKSYLENPAF 10 Unmodified _WKSYLENPAF_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.8128662109375 2 627.811313 1253.60807 0.20371 0.00012789 -0.86708 -0.00054437 -0.66337 -0.00041647 627.8106817822712 95.527 0.22393 95.159 94.994 95.218 -0.36815 15 10 2 0 0 0 0.69377 1 52143 52143 3.5965 0 1 523970 75797 4999 50537 51640 88402 88402 -0.00858602839548439 WKSYLENPAF 10 Unmodified _WKSYLENPAF_ 0 0 0 ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT ENSG00000137992|ENST00000370132|DBT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8120727539062 2 627.811313 1253.60807 2.2208 0.0013942 -0.058907 -3.6982E-05 2.1619 0.0013572 627.8112911561441 95.108 0.35001 95.112 94.942 95.292 0.004158 32 12 3 0 0 0 0.69377 1 52933 52933 3.5965 0.31518 1 4198400 75798 4999 50537 51640 88403 88403 -0.00858602839548439 WKTFQLQKVS 10 Unmodified _WKTFQLQKVS_ 0 0 0 REV__nc|ENSG00000204179|Q4JDL3-5|PTPN20 REV__nc|ENSG00000204179|Q4JDL3-5|PTPN20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.8557739257812 2 632.856055 1263.69756 NaN NaN NaN NaN NaN NaN NaN 97.361 1 97.118 96.618 97.618 -0.24277 0 0 0 1.0024 1 53164 53164 0.40072 0 1 + 75799 24144 50538 51641 88404 88404 0.07625651839816783 WKTTRKRVH 9 Unmodified _WKTTRKRVH_ 0 0 0 ENST00000591360.1_1_18:56202681-56203395:+|nuORF ENST00000591360.1_1_18:56202681-56203395:+|nuORF ENST00000591360.1_1_18:56202681-56203395:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.3604125976562 2 606.359631 1210.70471 -0.58418 -0.00035422 1.8623 0.0011292 1.2781 0.00077498 606.360416092203 104.49 0.030251 104.44 104.43 104.46 -0.048737 12 6 2 0 0 0 0.58145 1 58017 58017 1.8442 0.19162 1 2757600 75800 15700 50539 51642 88405 88405 0.10778429230913389 WKVKIHCIF 9 Unmodified _WKVKIHCIF_ 0 0 0 REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF REV__ENST00000330714.7_1_21:42733883-42733955:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8893737792969 3 391.891562 1172.65286 -0.13989 -5.4822E-05 -1.9705 -0.00077222 -2.1104 -0.00082704 391.8907579305062 37.763 0.33197 37.78 37.673 38.005 0.01704 39 15 3 0 0 0 0.55144 1 20150 20150 2.4985 0 1 5696400 + 75801 25593 50540 51643 88406 88406 0.073435494927935 WKVLKWFI 8 Unmodified _WKVLKWFI_ 0 0 0 REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.3402709960938 2 560.339313 1118.66407 2.4664 0.001382 0.053634 3.0053E-05 2.52 0.001412 560.3391742012174 94.871 1.0934 94.885 94.568 95.661 0.014244 134 41 5 0 0 0 0.81107 2 52705 52705;52811 0 0 1 228320000 + 75802 24914 50541 51644 88407;88408 88407 0.10948694858598174 WKVLKWFI 8 Unmodified _WKVLKWFI_ 0 0 0 REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF REV__ENST00000255305.10_3_13:21436952-21442818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8959350585938 3 373.895301 1118.66407 2.0297 0.00075888 0.17824 6.6643E-05 2.2079 0.00082553 373.89526650205 94.862 0.7343 94.876 94.568 95.302 0.014244 82 27 4 0 0 0 0.81107 1 52734 52734 0 0 1 44587000 + 75803 24914 50541 51644 88409 88409 0.10948694858598174 WKVPMKAI 8 Unmodified _WKVPMKAI_ 0 0 0 REV__ENSG00000167601|ENST00000301178|AXL;REV__ENSG00000153208|ENST00000295408|MERTK REV__ENSG00000153208|ENST00000295408|MERTK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.788818359375 2 486.788598 971.562644 NaN NaN NaN NaN NaN NaN NaN 88.717 1 88.213 87.713 88.713 -0.50423 0 0 0 0.97444 1 48517 48517 0.79363 0 1 + 75804 21160;22224 50542 51645 88410 88410 0.07572500164394569 WKYLVWVF 8 Unmodified _WKYLVWVF_ 0 0 0 REV__ENST00000394243.5_1_5:150032023-150032371:+|nuORF REV__ENST00000394243.5_1_5:150032023-150032371:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.880859375 3 380.879539 1139.61679 -0.12779 -4.8671E-05 2.4634 0.00093826 2.3356 0.00088959 380.8803056923731 22.382 0.2188 22.405 22.294 22.513 0.022896 13 9 2 0 0 0 0.80676 1 11410 11410 1.6526 0.63905 1 662850 + 75805 26439 50543 51646 88411 88411 0.05256415587587071 WKYYYGHY 8 Unmodified _WKYYYGHY_ 0 0 0 nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11;nc|ENSG00000088836|Q8NBS3-2|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 nc|ENSG00000088836|Q8NBS3-5|SLC4A11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.2689208984375 2 590.266542 1178.51853 NaN NaN NaN NaN NaN NaN NaN 15.864 1 15.85 15.35 16.35 -0.014067 0 0 0 0.97444 1 7805 7805 0 0 1 75806 1500 50544 51647 88412 88412 -0.06358812728240082 WLAAVLSL 8 Unmodified _WLAAVLSL_ 0 0 0 REV__ENST00000495813.5_1_12:8084010-8084064:-|nuORF REV__ENST00000495813.5_1_12:8084010-8084064:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.7640686035156 2 436.765646 871.516739 NaN NaN NaN NaN NaN NaN NaN 56.82 1 56.335 55.835 56.835 -0.48554 0 0 0 0.85111 1 30870 30870 20.871 5.024 1 + 75807 27954 50545 51648 88413 88413 0.0758417825380775 WLAEKLPTL 9 Unmodified _WLAEKLPTL_ 0 0 0 nc|ENSG00000175216|Q14008-2|CKAP5;ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 nc|ENSG00000175216|Q14008-2|CKAP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.81640625 2 535.815867 1069.61718 1.0309 0.00055235 -0.020051 -1.0744E-05 1.0108 0.0005416 535.8160144345106 70.742 0.38686 70.778 70.571 70.958 0.035507 44 17 3 0 0 0 0.012668 2 38992 38888;38992 72.968 40.182 1 12298000 75808 8497 50546 51649 88414;88415 88415 0.08515790516798916 WLAPDLSHPL 10 Unmodified _WLAPDLSHPL_ 0 0 0 REV__ENST00000367506.9_1_1:185125904-185126051:-|nuORF REV__ENST00000367506.9_1_1:185125904-185126051:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.8745727539062 3 383.541475 1147.60259 -0.68837 -0.00026402 -0.14271 -5.4737E-05 -0.83108 -0.00031875 383.5415718494251 27.417 0.14567 27.417 27.362 27.508 0 11 7 2 0 0 0 0.6606 1 14133 14133 3.8763 0 1 1596100 + 75809 25988 50547 51650 88416 88416 0.03469718368660324 WLARVAGG 8 Unmodified _WLARVAGG_ 0 0 0 REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF REV__ENST00000304222.2_1_17:15848237-15848780:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2383117675781 2 415.237587 828.460622 -0.16206 -6.7295E-05 1.895 0.00078687 1.7329 0.00071957 415.2386477674956 51.639 0.27416 51.58 51.416 51.69 -0.058918 33 13 3 0 0 0 0.80992 1 27933 27933 0.69038 0 1 5199800 + 75810 25357 50548 51651 88417 88417 0.03952970137004286 WLCFCFCFC 9 Unmodified _WLCFCFCFC_ 0 0 0 ENST00000373115.4_1_10:73769153-73769792:+|nuORF ENST00000373115.4_1_10:73769153-73769792:+|nuORF ENST00000373115.4_1_10:73769153-73769792:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 586.2135009765625 2 586.215237 1170.41592 NaN NaN NaN NaN NaN NaN NaN 16.132 1 13.575 13.075 14.075 -2.557 0 0 0 0.84369 1 8336 8336 2.3027 0.65011 1 75811 12399 50549 51652 88418 88418 -0.16247004378874408 WLCGVVAPLLL 11 Unmodified _WLCGVVAPLLL_ 0 0 0 ENST00000399683.7_1_20:3734265-3734637:-|nuORF ENST00000399683.7_1_20:3734265-3734637:-|nuORF ENST00000399683.7_1_20:3734265-3734637:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 395.2071228027344 3 395.235106 1182.68349 1.4708 0.00058131 -0.65853 -0.00026027 0.81227 0.00032104 395.23482657658815 94.39 0.19895 88.215 88.1 88.299 -6.1757 22 11 3 0 0 0 0.30303 1 62483 62483 3.0723 0 1 8741200 75812 12867 50550 51653 88419 88419 0.09945283087199641 WLCYSSRRHDQ 11 Unmodified _WLCYSSRRHDQ_ 0 0 0 ENST00000323853.9_1_2:96957172-96957495:-|nuORF ENST00000323853.9_1_2:96957172-96957495:-|nuORF ENST00000323853.9_1_2:96957172-96957495:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.562255859375 3 484.226332 1449.65717 -0.4428 -0.00021442 2.1533 0.0010427 1.7105 0.00082825 484.22714259766184 14.724 0.056185 14.693 14.659 14.715 -0.030868 25 17 2 0 0 0 0.74157 1 7179 7179 0.094841 0 1 528040 75813 11796 50551 51654 88420 88420 -0.04967637822232973 WLDVPTAY 8 Unmodified _WLDVPTAY_ 0 0 0 REV__ENST00000473078.1_1_7:92300738-92355023:-|nuORF REV__ENST00000473078.1_1_7:92300738-92355023:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7448120117188 2 482.742368 963.470183 1.078 0.00052038 1.7302 0.00083524 2.8082 0.0013556 482.7428046316522 35.623 0.24607 31.43 31.367 31.613 -4.1928 26 15 2 0 0 0 0.46494 1 20684 20684 38.151 13.477 1 10791000 + 75814 18461 50552 51655 88421 88421 -0.013013063681569292 WLECLDSMKF 10 Unmodified _WLECLDSMKF_ 0 0 0 ENST00000216218.7_1_22:41222585-41223167:-|nuORF ENST00000216218.7_1_22:41222585-41223167:-|nuORF ENST00000216218.7_1_22:41222585-41223167:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.2943725585938 2 636.293585 1270.57262 -0.77718 -0.00049452 -0.085904 -5.466E-05 -0.86309 -0.00054918 636.2933914738124 77.282 0.31189 76.799 76.603 76.915 -0.4826 31 13 3 0 0 0 0.69064 1 42268 42268 3.9444 0.3479 1 1580300 75815 11007 50553 51656 88422 88422 -0.05184724683203967 WLEHLSLCEY 10 Unmodified _WLEHLSLCEY_ 0 0 0 ENSG00000077044|ENST00000264057|DGKD;nc|ENSG00000077044|Q16760-2|DGKD ENSG00000077044|ENST00000264057|DGKD ENSG00000077044|ENST00000264057|DGKD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.5384216308594 3 431.537513 1291.59071 0.70786 0.00030547 1.5087 0.00065108 2.2166 0.00095655 431.5382576224117 47.734 0.31493 47.734 47.601 47.916 0 35 14 3 0 0 0 0.66569 1 26132 26132 3.5871 0 1 5711900 75816 1202 50554 51657 88423 88423 -0.0434226643681086 WLERWDSQCTV 11 Unmodified _WLERWDSQCTV_ 0 0 0 REV__ENSG00000103978|ENST00000389834|TMEM87A REV__ENSG00000103978|ENST00000389834|TMEM87A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 711.32666015625 2 711.827169 1421.63978 0.24348 0.00017331 -1.6578 -0.00118 -1.4143 -0.0010067 711.8267682234076 53.316 0.13146 53.316 53.221 53.353 0 7 5 2 0 0 0 0.29817 1 29554 29554 8.1555 0 1 1610600 + 75817 18330 50555 51658 88424 88424 -0.05416978147900409 WLFASFCSF 9 Unmodified _WLFASFCSF_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.779541015625 2 554.252046 1106.48954 0.60112 0.00033317 -0.1918 -0.00010631 0.40932 0.00022686 554.2520044093473 94.142 0.41028 93.721 93.479 93.89 -0.42044 53 22 3 0 0 0 0.21242 1 51313 51313 5.2307 0 1 2538000 75818 4279 50556 51659 88425 88425 -0.05944673348881224 WLFASFCSF 9 Unmodified _WLFASFCSF_ 0 0 0 ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ ENSG00000130943|ENST00000253255|PKDREJ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.8037109375 2 554.252046 1106.48954 1.0224 0.00056667 -0.5358 -0.00029697 0.48661 0.0002697 554.2521434365291 64.278 0.37614 64.267 64.056 64.432 -0.010529 49 18 4 0 0 0 0.203 1 35121 35121 9.3474 4.1168 1 16905000 75819 4279 50556 51659 88426 88426 -0.05944673348881224 WLFKVWPTL 9 Unmodified _WLFKVWPTL_ 0 0 0 REV__ENSG00000107581|ENST00000369144|EIF3A REV__ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.3389282226562 2 595.342052 1188.66955 -0.13841 -8.24E-05 -3.051 -0.0018164 -3.1894 -0.0018988 595.3391603276816 98.789 0.11337 92.613 92.535 92.648 -6.1757 13 8 2 0 0 0 0.30562 1 65602 65602 16.942 2.104 1 35359000 + 75820 18565 50557 51660 88427 88427 0.08276373650414826 WLFMLLISI 9 Oxidation (M) _WLFM(Oxidation (M))LLISI_ WLFM(1)LLISI WLFM(44)LLISI 0 0 1 REV__nc|ENSG00000152592|Q13316-2|DMP1 REV__nc|ENSG00000152592|Q13316-2|DMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.3321533203125 2 576.330296 1150.64604 1.2336 0.00071094 2.6289 0.0015151 3.8625 0.0022261 576.331937167796 96.247 0.14285 90.071 90.007 90.15 -6.1757 10 8 2 0 0 0 0.052168 1 63791 63791 44.407 21.259 1 6814300 + 75821 21129 50558 51661 88428 88428 1844 0.07674191821593013 WLFNITADPY 10 Unmodified _WLFNITADPY_ 0 0 0 ENSG00000180801|ENST00000315366|ARSJ ENSG00000180801|ENST00000315366|ARSJ ENSG00000180801|ENST00000315366|ARSJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.8726806640625 3 413.873001 1238.59717 -0.41659 -0.00017242 0.029199 1.2085E-05 -0.38739 -0.00016033 413.8731227241265 22.422 0.49001 22.422 22.204 22.694 0 88 23 5 0 0 0 0.70951 1 11524 11524 0.77653 0.32202 1 34698000 75822 8925 50559 51662 88429 88429 -0.012580052137991515 WLFVFFFL 8 Unmodified _WLFVFFFL_ 0 0 0 REV__ENST00000379375.5_1_6:12290782-12290878:+|nuORF REV__ENST00000379375.5_1_6:12290782-12290878:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.302978515625 2 559.807314 1117.60008 0.38189 0.00021379 1.903 0.0010653 2.2849 0.0012791 559.8079004916542 79.436 0.35676 79.436 79.256 79.613 0 26 13 3 0 0 0 0.80624 1 44072 44072 2.8892 0 1 724120 + 75823 26281 50560 51663 88430 88430 0.045979147016623756 WLGDRCYGHF 10 Unmodified _WLGDRCYGHF_ 0 0 0 ENST00000480503.5_1_7:45008844-45011824:-|nuORF ENST00000480503.5_1_7:45008844-45011824:-|nuORF ENST00000480503.5_1_7:45008844-45011824:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5220336914062 3 418.522197 1252.54476 -0.39906 -0.00016701 -0.17798 -7.4487E-05 -0.57703 -0.0002415 418.52210067734705 56.234 0.17495 56.165 56.055 56.23 -0.068737 15 8 2 0 0 0 0.67459 1 30563 30563 3.0723 0.81953 1 5820900 75824 14058 50561 51664 88431 88431 -0.07140866828422077 WLGRWCCR 8 Unmodified _WLGRWCCR_ 0 0 0 REV__ENST00000264187.6_1_1:236228291-236228420:-|nuORF REV__ENST00000264187.6_1_1:236228291-236228420:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.2548217773438 2 540.254931 1078.49531 NaN NaN NaN NaN NaN NaN NaN 84.568 1 84.068 83.568 84.568 -0.49961 0 0 0 0.97444 1 46277 46277 0 0 1 + 75825 25062 50562 51665 88432 88432 -0.04079853318239657 WLGRWRRKRRW 11 Unmodified _WLGRWRRKRRW_ 0 0 0 ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000283093|ENST00000634648|CENPVL2 ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000223591|ENST00000602548|CENPVL1 MSMS AL20221201_MKP_PDAC_01 4 828.4826049804688 2 828.484551 1654.95455 NaN NaN NaN NaN NaN NaN NaN 72.016 1 65.84 65.34 66.34 -6.1757 0 0 0 0.94301 1 47117 47117 0.35063 0 1 75826 10572 50563 51666 88433 88433 0.1532703162715734 WLGSHLRFF 9 Unmodified _WLGSHLRFF_ 0 0 0 REV__ENST00000453682.1_1_X:12863046-12863286:-|nuORF REV__ENST00000453682.1_1_X:12863046-12863286:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.8110961914062 2 581.811451 1161.60835 NaN NaN NaN NaN NaN NaN NaN 101.88 1 95.707 95.207 96.207 -6.1757 0 0 0 0.7243 1 68386 68386 8.5933 1.304 1 + 75827 27234 50564 51667 88434 88434 0.034008616709797934 WLGWNLQRP 9 Unmodified _WLGWNLQRP_ 0 0 0 ENST00000274605.5_1_5:177549072-177549429:+|nuORF ENST00000274605.5_1_5:177549072-177549429:+|nuORF ENST00000274605.5_1_5:177549072-177549429:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5437622070312 3 390.545331 1168.61416 -0.051789 -2.0226E-05 -2.1408 -0.0008361 -2.1926 -0.00085632 390.54457007269053 16.024 0.11065 16.029 15.952 16.063 0.0050564 19 10 2 0 0 0 0.55144 1 8000 8000 2.4985 0 1 778520 75828 11385 50565 51668 88435 88435 0.03659960182631039 WLHKPAKLT 9 Unmodified _WLHKPAKLT_ 0 0 0 REV__PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant REV__PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 547.3330078125 2 547.329476 1092.6444 NaN NaN NaN NaN NaN NaN NaN 109.03 1 102.85 102.35 103.35 -6.1757 0 0 0 0.85737 1 72836 72836 0.6015 0 1 + 75829 18868 50566 51669 88436 88436 0.10178318847852097 WLHKPAKLT 9 Unmodified _WLHKPAKLT_ 0 0 0 REV__PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant REV__PDE4D|p.G790Wfs*9|1|0.18|ENSG00000113448|chr5:58974726-58974727|-/A|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 547.331298828125 2 547.329476 1092.6444 NaN NaN NaN NaN NaN NaN NaN 109.9 1 103.73 103.23 104.23 -6.1757 0 0 0 0.85737 1 73375 73375 0.6015 0 1 + 75830 18868 50566 51669 88437 88437 0.10178318847852097 WLHPEQSPLPS 11 Unmodified _WLHPEQSPLPS_ 0 0 0 ENST00000535075.1_1_11:72465944-72466832:-|nuORF;ENST00000543089.1_1_11:72465944-72468974:-|nuORF;ENSG00000214530|ENST00000334805|STARD10 ENST00000535075.1_1_11:72465944-72466832:-|nuORF ENST00000535075.1_1_11:72465944-72466832:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8876953125 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 102.81 1 96.633 96.133 97.133 -6.1757 0 0 0 0.93893 1 68973 68973 1.3296 0.70282 1 75831 10497 50567 51670 88438 88438 0.007201845634881465 WLICERPF 8 Unmodified _WLICERPF_ 0 0 0 REV__ENSG00000170743|ENST00000318881|SYT9 REV__ENSG00000170743|ENST00000318881|SYT9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2744750976562 2 532.273312 1062.53207 0.51733 0.00027536 0.99306 0.00052858 1.5104 0.00080394 532.2735204309955 84.324 0.62626 78.148 77.891 78.517 -6.1757 58 35 2 0 0 0 0.6895 1 55539 55539 18.135 5.6034 1 18192000 + 75832 22507 50568 51671 88439 88439 0.003307217793462769 WLKKLIKK 8 Unmodified _WLKKLIKK_ 0 0 0 REV__ENST00000394144.8_2_3:99979878-99998548:+|nuORF REV__ENST00000394144.8_2_3:99979878-99998548:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1057.7294921875 1 1056.7292 1055.72192 0.17727 0.00018733 1.2686 0.0013406 1.4459 0.0015279 1056.7302261593852 46.294 0.20188 46.294 46.21 46.412 0 10 9 2 0 0 0 0.81107 1 25259 25259 0 0 1 1153200 + 75833 26436 50569 51672 88440 88440 0.1962895678402674 WLKKLIKK 8 Unmodified _WLKKLIKK_ 0 0 0 REV__ENST00000394144.8_2_3:99979878-99998548:+|nuORF REV__ENST00000394144.8_2_3:99979878-99998548:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1057.062744140625 1 1056.7292 1055.72192 0.17727 0.00018733 1.2686 0.0013406 1.4459 0.0015279 1056.7302261593852 46.294 0.20188 46.294 46.21 46.412 0 10 9 2 0 0 0 8.7369 1 25286 25286 0 0 1 1153200 + 75834 26436 50569 51672 88441 88441 0.1962895678402674 WLKRQRGKPRV 11 Unmodified _WLKRQRGKPRV_ 0 0 0 REV__ENSG00000108349|ENST00000264645|CASC3 REV__ENSG00000108349|ENST00000264645|CASC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 712.4404296875 2 712.441486 1422.86842 1.3317 0.00094879 -0.16413 -0.00011693 1.1676 0.00083185 712.9432365604666 105.5 0.16145 99.329 99.293 99.455 -6.1757 22 12 3 0 0 0 0.74203 1 70719 70719 0.30703 0.30703 1 8584200 + 75835 18599 50570 51673 88442 88442 0.17390027001829367 WLLKALQQF 9 Unmodified _WLLKALQQF_ 0 0 0 ENSG00000162365|ENST00000371891|CYP4A22;nc|ENSG00000187048|Q02928-2|CYP4A11;nc|ENSG00000162365|Q5TCH4-2|CYP4A22;ENSG00000187048|ENST00000310638|CYP4A11 ENSG00000162365|ENST00000371891|CYP4A22 ENSG00000162365|ENST00000371891|CYP4A22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8943786621094 3 382.893848 1145.65972 0.5526 0.00021159 -0.038878 -1.4886E-05 0.51372 0.0001967 382.89383713917573 42.974 0.54769 42.958 42.698 43.246 -0.015667 35 25 2 0 0 0 0.53666 1 22973 22973 2.9952 0 1 3089500 75836 6848 50571 51674 88443 88443 0.09271185645025071 WLLLEQRRF 9 Unmodified _WLLLEQRRF_ 0 0 0 REV__nc|ENSG00000175054|Q13535-2|ATR REV__nc|ENSG00000175054|Q13535-2|ATR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.8651123046875 2 630.864215 1259.71388 NaN NaN NaN NaN NaN NaN NaN 76.966 1 76.487 75.987 76.987 -0.47945 0 0 0 0.85737 1 42138 42138 0.6015 0 1 + 75837 22834 50572 51675 88444 88444 0.09440777796589828 WLLRRLRRLER 11 Unmodified _WLLRRLRRLER_ 0 0 0 REV__ENSG00000105538|ENST00000222145|RASIP1 REV__ENSG00000105538|ENST00000222145|RASIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 784.3247680664062 2 783.994417 1565.97428 NaN NaN NaN NaN NaN NaN NaN 88.884 1 88.932 88.432 89.432 0.047852 0 0 0 0.9435 1 49450 49450 0 0 1 + 75838 18433 50573 51676 88445 88445 0.21393362847311437 WLLVNFDCSAM 11 Unmodified _WLLVNFDCSAM_ 0 0 0 nc|ENSG00000132437|P20711-4|DDC;nc|ENSG00000132437|P20711-3|DDC;ENSG00000132437|ENST00000444124|DDC;nc|ENSG00000132437|P20711-2|DDC nc|ENSG00000132437|P20711-4|DDC nc|ENSG00000132437|P20711-4|DDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5351257324219 3 433.535115 1297.58352 0.24703 0.00010709 -0.20974 -9.093E-05 0.037286 1.6165E-05 433.5349251902994 58.621 0.38889 58.131 57.901 58.29 -0.49079 39 18 3 0 0 0 0.71036 1 31828 31828 2.8433 1.6285 1 2401500 75839 4407 50574 51677 88446 88446 -0.05337322308923831 WLLYFAASL 9 Unmodified _WLLYFAASL_ 0 0 0 REV__nc|ENSG00000162891|Q9NYY1-2|IL20 REV__nc|ENSG00000162891|Q9NYY1-2|IL20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7982788085938 2 542.29731 1082.58007 0.32459 0.00017602 3.3083 0.0017941 3.6329 0.0019701 542.2990417040077 67.558 0.20245 67.076 66.939 67.142 -0.48219 12 8 2 0 0 0 0.203 1 36923 36923 9.3474 0.75416 1 683730 + 75840 21702 50575 51678 88447 88447 0.042081189710415856 WLMAMLIL 8 Unmodified _WLMAMLIL_ 0 0 0 REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.780517578125 2 495.779385 989.544217 0.51013 0.00025291 1.0809 0.0005359 1.5911 0.00078881 495.780009710178 90.794 1.1121 90.3 89.991 91.103 -0.49457 203 62 5 0 0 0 0.80044 1 49936 49936 6.3541 0 1 135250000 + 75841 23138 50576 51679 88448 88448 0.04902622198198969 WLMLLPLLKPK 11 Unmodified _WLMLLPLLKPK_ 0 0 0 REV__ENST00000473989.7_2_7:138968337-138968418:+|nuORF REV__ENST00000473989.7_2_7:138968337-138968418:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 676.4315185546875 2 676.430344 1350.84614 1.5878 0.0010741 0.19592 0.00013252 1.7838 0.0012066 676.4302973847664 105.01 0.20613 98.833 98.719 98.925 -6.1757 76 18 6 0 0 0 0.7453 1 70256 70256 0 0 1 2937999999.9999995 + 75842 27552 50577 51680 88449 88449 0.18474666489191804 WLMTDQDRII 10 Unmodified _WLMTDQDRII_ 0 0 0 ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8883361816406 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 103.44 1 103.34 102.84 103.84 -0.10458 0 0 0 1.0019 1 56421 56421 0.15932 0 1 75843 13746 50578 51681 88450 88450 0.010571113458127002 WLMTDQDRII 10 Unmodified _WLMTDQDRII_ 0 0 0 ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF ENST00000465976.1_1_7:86827133-86832342:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.888427734375 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 108 1 101.82 101.32 102.32 -6.1757 0 0 0 0.99248 1 72199 72199 0.62683 0.29755 1 75844 13746 50578 51681 88451 88451 0.010571113458127002 WLMWSIAL 8 Unmodified _WLMWSIAL_ 0 0 0 ENST00000581294.2_1_17:25410653-25410737:-|nuORF ENST00000581294.2_1_17:25410653-25410737:-|nuORF ENST00000581294.2_1_17:25410653-25410737:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2725219726562 2 510.272781 1018.53101 0.29933 0.00015274 2.361 0.0012048 2.6603 0.0013575 510.27419572487065 64.14 0.4992 64.14 63.974 64.473 0 30 21 2 0 0 0 0.77907 1 35847 35847 10.183 1.5901 1 1106800 75845 15563 50579 51682 88452 88452 0.022485074104451996 WLNEFYFRHF 10 Unmodified _WLNEFYFRHF_ 0 0 0 REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF REV__ENST00000351010.6_1_5:149602275-149624861:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 729.8545532226562 2 729.851304 1457.68806 NaN NaN NaN NaN NaN NaN NaN 102.28 1 96.104 95.604 96.604 -6.1757 0 0 0 0.92825 1 68640 68640 6.7232 0.51738 1 + 75846 17483 50580 51683 88453 88453 -0.022481164457076375 WLNGFNWEGL 10 Unmodified _WLNGFNWEGL_ 0 0 0 nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 nc|ENSG00000138669|Q13237-2|PRKG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.5323486328125 3 412.532979 1234.57711 0.35499 0.00014645 -2.9097 -0.0012003 -2.5547 -0.0010539 412.532095115649 52.184 0.24092 52.125 52.027 52.267 -0.058918 25 11 3 0 0 0 0.69126 1 28265 28265 3.8763 0.80407 1 2646500 75847 5083 50581 51684 88454 88454 -0.030797561537610818 WLNRRSQF 8 Unmodified _WLNRRSQF_ 0 0 0 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 ENSG00000128908|ENST00000648947|INO80 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.7962036132812 2 553.796332 1105.57811 0.64274 0.00035595 0.43232 0.00023942 1.0751 0.00059536 554.2972833682991 68.008 0.37425 61.833 61.601 61.975 -6.1757 30 21 2 0 0 0 0.70294 1 44324 44324 16.942 2.3606 1 17409000 75848 4098 50582 51685 88455 88455 0.029545030057988697 WLNRVLCSF 9 Unmodified _WLNRVLCSF_ 0 0 0 REV__ENST00000448693.2_1_3:52740223-52740934:+|nuORF REV__ENST00000448693.2_1_3:52740223-52740934:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7584838867188 2 569.297319 1136.58008 0.58213 0.0003314 3.8383 0.0021851 4.4204 0.0025165 569.2996601961183 92.317 0.1355 91.836 91.791 91.927 -0.48092 6 5 2 0 0 0 0.58865 1 50486 50486 2.0598 0 1 214870 + 75849 27178 50583 51686 88456 88456 0.01725795699394439 WLNYCFEDFLF 11 Unmodified _WLNYCFEDFLF_ 0 0 0 REV__ENST00000301068.10_1_12:49458528-49458861:-|nuORF REV__ENST00000301068.10_1_12:49458528-49458861:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 748.829833984375 2 748.831388 1495.64822 -0.15167 -0.00011358 0.15478 0.0001159 0.0031044 2.3247E-06 748.8315264117488 56.563 0.25909 56.563 56.403 56.662 0 28 10 3 0 0 0 0.7326 1 31427 31427 1.1933 0 1 3003500 + 75850 25316 50584 51687 88457 88457 -0.07977424231285113 WLNYCFEDFLF 11 Unmodified _WLNYCFEDFLF_ 0 0 0 REV__ENST00000301068.10_1_12:49458528-49458861:-|nuORF REV__ENST00000301068.10_1_12:49458528-49458861:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 748.831388 1495.64822 0.27817 0.00020831 0.64594 0.0004837 0.92412 0.00069201 748.8315081581351 57.327 0.12859 56.837 56.729 56.858 -0.48974 0.1372 0.0006642 NaN 1.1933 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1204000 + 75851 25316 50584 51687 -0.07977424231285113 WLPCCRLLLH 10 Unmodified _WLPCCRLLLH_ 0 0 0 REV__nc|ENSG00000130589|Q9BYK8-2|HELZ2 REV__nc|ENSG00000130589|Q9BYK8-2|HELZ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3359985351562 2 627.335921 1252.65729 NaN NaN NaN NaN NaN NaN NaN 102.33 1 102.21 101.71 102.71 -0.11613 0 0 0 1.0061 1 55831 55831 0 0 1 + 75852 19730 50585 51688 88458 88458 0.04106690644084665 WLPFSLFKM 9 Unmodified _WLPFSLFKM_ 0 0 0 ENST00000398576.6_1_13:46701143-46701437:-|nuORF ENST00000398576.6_1_13:46701143-46701437:-|nuORF ENST00000398576.6_1_13:46701143-46701437:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.2131958007812 3 390.212301 1167.61507 NaN NaN NaN NaN NaN NaN NaN 65.081 1 65.081 64.581 65.581 0 0 0 0 0.84564 1 36306 36306 1.0715 0 1 75853 12852 50586 51689 88459 88459 0.03797038507354955 WLPRPSVKIKK 11 Unmodified _WLPRPSVKIKK_ 0 0 0 ENST00000601217.1_1_19:40947039-40947291:-|nuORF ENST00000601217.1_1_19:40947039-40947291:-|nuORF ENST00000601217.1_1_19:40947039-40947291:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 451.2901000976562 3 451.290602 1350.84998 1.7078 0.00077072 -2.1972 -0.00099158 -0.4894 -0.00022086 451.2889718171217 104.27 0.13567 98.094 98.014 98.149 -6.1757 16 8 3 0 0 0 0.74157 1 69845 69845 0.094841 0.011491 1 15427000 75854 15804 50587 51690 88460 88460 0.18858472307260854 WLRDEGCSVLI 11 Unmodified _WLRDEGCSVLI_ 0 0 0 REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF REV__ENST00000452556.5_1_2:214162070-215102915:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8875732421875 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 104.14 1 104.14 103.64 104.64 0 0 0 0 0.94165 1 57352 57352 0.45452 0.29519 1 + 75855 20709 50588 51691 88461 88461 0.010571113458354375 WLREWWFYDYL 11 Unmodified _WLREWWFYDYL_ 0 0 0 REV__ENSG00000143418|ENST00000368954|CERS2 REV__ENSG00000143418|ENST00000368954|CERS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.6044921875 3 559.601393 1675.78235 -0.20811 -0.00011646 3.2299 0.0018074 3.0218 0.001691 559.9370431002303 20.206 0.12598 20.234 20.155 20.281 0.028357 8 5 2 0 0 0 0.7453 1 10237 10237 0 0 1 661030 + 75856 20638 50589 51692 88462 88462 -0.028510224141882645 WLREWWFYDYL 11 Unmodified _WLREWWFYDYL_ 0 0 0 REV__ENSG00000143418|ENST00000368954|CERS2 REV__ENSG00000143418|ENST00000368954|CERS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 838.902099609375 2 838.898451 1675.78235 NaN NaN NaN NaN NaN NaN NaN 81.496 1 81.555 81.055 82.055 0.059929 0 0 0 0.9435 1 45066 45066 0 0 1 + 75857 20638 50589 51692 88463 88463 -0.028510224141882645 WLRGGPVGV 9 Unmodified _WLRGGPVGV_ 0 0 0 REV__ENST00000594728.1_1_11:62432848-62433109:+|nuORF REV__ENST00000594728.1_1_11:62432848-62433109:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7725524902344 2 470.771794 939.529036 0.28532 0.00013432 0.27336 0.00012869 0.55868 0.00026301 470.77198609282294 64.96 0.37778 64.96 64.765 65.143 0 28 17 2 0 0 0 0.62242 1 36301 36301 0 0 1 1298100 + 75858 29204 50590 51693 88464 88464 0.05685214716868359 WLRIEDIKKLK 11 Unmodified _WLRIEDIKKLK_ 0 0 0 nc|ENSG00000060237|Q9H4A3-4|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 nc|ENSG00000060237|Q9H4A3-4|WNK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.3008422851562 3 481.301166 1440.88167 NaN NaN NaN NaN NaN NaN NaN 85.418 1 84.916 84.416 85.416 -0.5015 0 0 0 0.9435 1 46740 46740 0 0 1 75859 824 50591 51694 88465 88465 0.1788642027051992 WLRIIEFLLQG 11 Unmodified _WLRIIEFLLQG_ 0 0 0 nc|ENSG00000166840|Q969I3-2|GLYATL1 nc|ENSG00000166840|Q969I3-2|GLYATL1 nc|ENSG00000166840|Q969I3-2|GLYATL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 694.4085083007812 2 694.408455 1386.80236 NaN NaN NaN NaN NaN NaN NaN 106.64 1 106.59 106.09 107.09 -0.048103 0 0 0 0.9435 1 59104 59104 0 0 1 75860 16356 50592 51695 88466 88466 0.12442773316433886 WLRLLRSWWRR 11 Unmodified _WLRLLRSWWRR_ 0 0 0 ENST00000216479.7_1_14:77924477-77924549:+|nuORF ENST00000216479.7_1_14:77924477-77924549:+|nuORF ENST00000216479.7_1_14:77924477-77924549:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 814.4754638671875 2 814.47586 1626.93717 NaN NaN NaN NaN NaN NaN NaN 83.538 1 83.601 83.101 84.101 0.063171 0 0 0 0.9435 1 46217 46217 0 0 1 75861 11012 50593 51696 88467 88467 0.1487769130151264 WLRRHQEFLLQ 11 Unmodified _WLRRHQEFLLQ_ 0 0 0 REV__ENST00000602529.1_1_1:228463255-228463756:-|nuORF REV__ENST00000602529.1_1_1:228463255-228463756:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 763.4232177734375 2 763.422959 1524.83137 NaN NaN NaN NaN NaN NaN NaN 98.558 1 92.382 91.882 92.882 -6.1757 0 0 0 0.89305 1 65388 65388 7.609 2.3121 1 + 75862 29263 50594 51697 88468 88468 0.08994310665411831 WLRRYFHD 8 Unmodified _WLRRYFHD_ 0 0 0 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 REV__nc|ENSG00000170468|Q9H6W3-2|RIOX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.2063903808594 3 398.205197 1191.59376 NaN NaN NaN NaN NaN NaN NaN 16.524 1 16.525 16.025 17.025 0.0010548 0 0 0 0.97444 1 8153 8153 0.45834 0.18932 1 + 75863 22485 50595 51698 88469 88469 0.005627895228371926 WLRSRRRRPRR 11 Unmodified _WLRSRRRRPRR_ 0 0 0 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 ENSG00000179598|ENST00000321560|PLD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 797.9900512695312 2 797.990532 1593.96651 NaN NaN NaN NaN NaN NaN NaN 108.67 1 108.63 108.13 109.13 -0.047607 0 0 0 0.9435 1 60179 60179 0 0 1 75864 8846 50596 51699 88470 88470 0.1932864837035595 WLRVKCCSTPT 11 Unmodified _WLRVKCCSTPT_ 0 0 0 ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF ENST00000589123.5_2_19:3465565-3466177:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.3277587890625 2 647.32575 1292.63695 0.51861 0.00033571 -0.042001 -2.7188E-05 0.47661 0.00030852 647.3257334290009 47.682 0.16669 47.682 47.601 47.767 0 13 7 3 0 0 0 0.67922 1 26135 26135 6.2058 0.47393 1 1971600 75865 15663 50597 51700 88471 88471 0.002334751935904933 WLRWPRWVA 9 Unmodified _WLRWPRWVA_ 0 0 0 ENST00000370406.7_1_X:149106490-149106673:-|nuORF ENST00000370406.7_1_X:149106490-149106673:-|nuORF ENST00000370406.7_1_X:149106490-149106673:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.353759765625 2 635.353817 1268.69308 NaN NaN NaN NaN NaN NaN NaN 99.575 1 99.575 99.075 100.08 0 0 0 0 0.8622 1 54970 54970 0 0 1 75866 12331 50598 51701 88472 88472 0.06948232207582805 WLSAQFYEYYM 11 Unmodified _WLSAQFYEYYM_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 750.8287353515625 2 750.828846 1499.64314 -0.056657 -4.254E-05 -0.76298 -0.00057287 -0.81964 -0.00061541 750.8282346595321 43.168 0.29078 42.858 42.678 42.969 -0.31039 41 13 4 0 0 0 0.7187 1 23005 23005 2.4985 1.0166 1 49453000 + 75867 25574 50599 51702 88473 88473 -0.08669728093877893 WLSAQFYEYYM 11 Unmodified _WLSAQFYEYYM_ 0 0 0 REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF REV__ENST00000327827.11_1_16:9212523-9212682:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 750.8289794921875 2 750.828846 1499.64314 0.42479 0.00031895 -0.57338 -0.00043051 -0.14859 -0.00011157 750.8283622074066 47.289 1.1089 46.936 46.446 47.555 -0.3526 150 54 3 0 0 0 0.69316 2 25253 25253;25560 4.897 1.9018 1 19315000 + 75868 25574 50599 51702 88474;88475 88474 -0.08669728093877893 WLSDVEQL 8 Unmodified _WLSDVEQL_ 0 0 0 REV__ENSG00000055044|ENST00000264279|NOP58 REV__ENSG00000055044|ENST00000264279|NOP58 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2510681152344 2 495.250557 988.486562 NaN NaN NaN NaN NaN NaN NaN 61.201 1 61.201 60.701 61.701 0 0 0 0 0.97444 1 34126 34126 2.8892 0 1 + 75869 17284 50600 51703 88476 88476 -0.00814225202043417 WLSEKKIK 8 Unmodified _WLSEKKIK_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1;ENST00000555495.5_1_14:93483145-93581508:-|nuORF ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MSMS AL20221201_MKP_PDAC_01 4 516.3170166015625 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 107.75 1 101.57 101.07 102.07 -6.1757 0 0 0 0.97444 1 72049 72049 0.69038 0 1 75870 1854 50601 51704 88477 88477 0.10343210236646883 WLSEKKIK 8 Unmodified _WLSEKKIK_ 0 0 0 ENSG00000100605|ENST00000267615|ITPK1;nc|ENSG00000100605|Q13572-2|ITPK1;ENST00000555495.5_1_14:93483145-93581508:-|nuORF ENSG00000100605|ENST00000267615|ITPK1 ENSG00000100605|ENST00000267615|ITPK1 MSMS AL20221201_MKP_PDAC_01 4 516.3167114257812 2 516.316035 1030.61752 NaN NaN NaN NaN NaN NaN NaN 108 1 101.82 101.32 102.32 -6.1757 0 0 0 0.97444 1 72196 72196 0.69038 0 1 75871 1854 50601 51704 88478 88478 0.10343210236646883 WLSQTLLL 8 Unmodified _WLSQTLLL_ 0 0 0 REV__ENSG00000161692|ENST00000315005|DBF4B REV__ENSG00000161692|ENST00000315005|DBF4B MSMS AL20221201_MKP_PDAC_01 4 487.2926940917969 2 487.289485 972.564418 NaN NaN NaN NaN NaN NaN NaN 104.91 1 98.734 98.234 99.234 -6.1757 0 0 0 0.97444 1 70225 70225 2.3027 0 1 + 75872 21607 50602 51705 88479 88479 0.07703832454023996 WLTGLCYVDL 10 Unmodified _WLTGLCYVDL_ 0 0 0 REV__ENST00000402538.7_1_2:33787897-33787981:+|nuORF REV__ENST00000402538.7_1_2:33787897-33787981:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.7959594726562 2 591.796817 1181.57908 0.062289 3.6862E-05 -2.0931 -0.0012387 -2.0308 -0.0012018 591.7953649084566 69.709 0.28198 69.709 69.557 69.839 0 31 13 3 0 0 0 0.60623 1 38786 38786 10.824 0.75 1 1834100 + 75873 26614 50603 51706 88480 88480 -0.00444463460166844 WLTGRSLIKK 10 Unmodified _WLTGRSLIKK_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MSMS AL20221201_MKP_PDAC_01 4 601.3758544921875 2 601.374415 1200.73428 NaN NaN NaN NaN NaN NaN NaN 104.5 1 98.328 97.828 98.828 -6.1757 0 0 0 0.99091 1 69981 69981 1.6526 0.17072 1 + 75874 23540 50604 51707 88481 88481 0.14193948456386352 WLTLTFAQFVY 11 Unmodified _WLTLTFAQFVY_ 0 0 0 REV__ENSG00000187527|ENST00000342358|ATP13A5 REV__ENSG00000187527|ENST00000342358|ATP13A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 694.8675537109375 2 694.866089 1387.71762 0.33263 0.00023113 0.11735 8.1541E-05 0.44998 0.00031267 694.866292033242 40.272 0.23058 39.975 39.843 40.073 -0.29716 24 10 3 0 0 0 0.63851 1 21287 21287 9.3831 4.0862 1 2672100 + 75875 23638 50605 51708 88482 88482 0.03927402779800104 WLTRELRP 8 Unmodified _WLTRELRP_ 0 0 0 REV__ENST00000460843.5_2_9:140729525-140729738:+|nuORF REV__ENST00000460843.5_2_9:140729525-140729738:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 535.8145141601562 2 535.808908 1069.60326 NaN NaN NaN NaN NaN NaN NaN 85.317 1 79.142 78.642 79.642 -6.1757 0 0 0 0.9192 1 56180 56180 16.942 2.104 1 + 75876 27307 50606 51709 88483 88483 0.07124557808378995 WLTRSTSSE 9 Unmodified _WLTRSTSSE_ 0 0 0 REV__nc|ENSG00000183654|A6NNE9-2|MARCHF11 REV__nc|ENSG00000183654|A6NNE9-2|MARCHF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 356.177734375 3 356.176972 1065.50909 NaN NaN NaN NaN NaN NaN NaN 22.642 1 22.642 22.142 23.142 0 0 0 0 0.84564 1 11519 11519 1.0715 0.20709 1 + 75877 23363 50607 51710 88484 88484 -0.021046258044407296 WLTWTLLL 8 Unmodified _WLTWTLLL_ 0 0 0 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 REV__nc|ENSG00000174837|Q14246-4|ADGRE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3069458007812 2 523.307678 1044.6008 0.45998 0.00024071 -0.46622 -0.00024397 -0.0062379 -3.2644E-06 523.3073536008156 58.75 0.29213 58.689 58.546 58.839 -0.060719 24 14 2 0 0 0 0.63229 1 32007 32007 23.148 1.4018 1 2041700 + 75878 22821 50608 51711 88485 88485 0.0802870935071951 WLVDHVYAI 9 Unmodified _WLVDHVYAI_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;ENST00000529672.1_1_11:111613245-111618714:-|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 558.2994384765625 2 558.297842 1114.58113 0.38636 0.0002157 0.31144 0.00017387 0.69779 0.00038958 558.2982324216513 72.679 0.22897 72.721 72.594 72.823 0.041733 18 10 2 0 0 0 0.095405 1 40015 40015 34.102 8.7031 1 1891200 75879 2336 50609 51712 88486 88486 0.028423333399359763 WLVPQFVL 8 Unmodified _WLVPQFVL_ 0 0 0 REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2914428710938 2 501.294571 1000.57459 NaN NaN NaN NaN NaN NaN NaN 58.007 1 57.517 57.017 58.017 -0.48974 0 0 0 0.77249 1 31532 31532 24.674 0.46393 1 + 75880 19121 50610 51713 88487 88487 0.07432440179240984 WLVVLVIVL 9 Unmodified _WLVVLVIVL_ 0 0 0 REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF REV__ENST00000482827.1_1_X:74722059-74742841:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.3558959960938 2 527.357171 1052.69979 NaN NaN NaN NaN NaN NaN NaN 100.21 1 100.18 99.676 100.68 -0.036301 0 0 0 0.82015 1 55663 55663 5.2307 0 1 + 75881 18236 50611 51714 88488 88488 0.1755473231560245 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2508850097656 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 9.0104 1 9.0104 8.5104 9.5104 0 0 0 0 0.86004 1 4294 4294 0.26902 0.033176 1 + 75882 25246 50612 51715 88489 88489 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.2042541503906 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 35.867 1 35.867 35.367 36.367 0 0 0 0 0.85261 1 18985 18985 1.1933 0 1 + 75883 25246 50612 51715 88490 88490 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2507934570312 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 14.357 1 14.364 13.864 14.864 0.0073986 0 0 0 0.86004 1 7113 7113 0.26902 0.033176 1 + 75884 25246 50612 51715 88491 88491 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.2518005371094 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 71.176 1 71.215 70.715 71.715 0.039024 0 0 0 0.86004 1 39184 39184 0.26902 0.033176 1 + 75885 25246 50612 51715 88492 88492 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.2515258789062 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 0.92187 1 -1.5601 -2.0601 -1.0601 -2.482 0 0 0 0.86004 1 484 484 0.26902 0.033176 1 + 75886 25246 50612 51715 88493 88493 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.2507934570312 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 3.4622 1 0.98022 0.48022 1.4802 -2.482 0 0 0 0.86004 1 1759 1759 0.26902 0.033176 1 + 75887 25246 50612 51715 88494 88494 0.13816055295728802 WLVWLLRPL 9 Unmodified _WLVWLLRPL_ 0 0 0 REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF REV__ENST00000292431.4_1_19:13250289-13250439:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 399.2510681152344 3 399.249855 1194.72774 NaN NaN NaN NaN NaN NaN NaN 13.635 1 11.153 10.653 11.653 -2.482 0 0 0 0.86004 1 6908 6908 0.26902 0.033176 1 + 75888 25246 50612 51715 88495 88495 0.13816055295728802 WLWWQPWWWWK 11 Unmodified _WLWWQPWWWWK_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4384155273438 2 894.435338 1786.85612 NaN NaN NaN NaN NaN NaN NaN 43.939 1 43.939 43.439 44.439 0 0 0 0 0.9435 1 23892 23892 0 0 1 75889 76 50613 51716 88496 88496 -0.005830094612292669 WLWWQPWWWWK 11 Unmodified _WLWWQPWWWWK_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4365844726562 2 894.435338 1786.85612 NaN NaN NaN NaN NaN NaN NaN 55.544 1 55.544 55.044 56.044 0 0 0 0 0.9435 1 30858 30858 0 0 1 75890 76 50613 51716 88497 88497 -0.005830094612292669 WLWWQPWWWWK 11 Unmodified _WLWWQPWWWWK_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2164001464844 4 447.721307 1786.85612 0.38322 0.00017157 0.78329 0.0003507 1.1665 0.00052227 447.7215653843583 29.661 0.19497 29.691 29.589 29.784 0.030104 12 8 2 0 0 0 0.30604 1 15465 15465 0.094841 0.094841 1 1827200 75891 76 50613 51716 88498 88498 -0.005830094612292669 WLWWQPWWWWK 11 Unmodified _WLWWQPWWWWK_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 894.4390258789062 2 894.435338 1786.85612 NaN NaN NaN NaN NaN NaN NaN 60.127 1 54.013 53.513 54.513 -6.1147 0 0 0 0.9435 1 38671 38671 0 0 1 75892 76 50613 51716 88499 88499 -0.005830094612292669 WLYKYHWKWIL 11 Unmodified _WLYKYHWKWIL_ 0 0 0 nc|ENSG00000156103|P51512-2|MMP16 nc|ENSG00000156103|P51512-2|MMP16 nc|ENSG00000156103|P51512-2|MMP16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 818.4471435546875 2 818.445372 1634.87619 NaN NaN NaN NaN NaN NaN NaN 38.778 1 38.491 37.991 38.991 -0.28687 0 0 0 0.9435 1 20429 20429 0 0 1 75893 16291 50614 51717 88500 88500 0.08414741478736687 WLYYLMKC 8 Unmodified _WLYYLMKC_ 0 0 0 REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF REV__ENST00000567638.1_1_15:75140939-75144521:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7330322265625 2 560.271924 1118.52929 0.58402 0.00032721 0.24035 0.00013466 0.82437 0.00046187 560.2717823434203 94.472 0.30495 94.052 93.89 94.195 -0.42043 29 16 2 0 0 0 8.7369 1 51571 51571 2.5775 0.27475 1 450240 + 75894 20477 50615 51718 88501 88501 -0.025228696698150088 WMAEQKISY 9 Oxidation (M) _WM(Oxidation (M))AEQKISY_ WM(1)AEQKISY WM(67)AEQKISY 0 0 1 ENSG00000138433|ENST00000342016|CIR1;ENST00000472169.1_1_2:175252411-175260410:-|nuORF;ENST00000461454.1_1_2:175243642-175260410:-|nuORF;nc|ENSG00000138433|Q86X95-2|CIR1 ENSG00000138433|ENST00000342016|CIR1 ENSG00000138433|ENST00000342016|CIR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.27734375 2 586.276249 1170.53795 0.70866 0.00041547 -1.0248 -0.00060084 -0.31618 -0.00018537 586.2756076441102 43.045 0.28867 38.28 38.062 38.35 -4.7648 25 18 2 0 0 0 0.016448 1 26013 26013 67.081 41.681 1 11797000 75895 5053 50616 51719 88502 88502 924 -0.040502244996559966 WMANVCKNLF 10 Unmodified _WMANVCKNLF_ 0 0 0 PNLIP|p.L103M|1|0.18|ENSG00000175535|chr10:116548465-116548465|C/A|missense_variant PNLIP|p.L103M|1|0.18|ENSG00000175535|chr10:116548465-116548465|C/A|missense_variant PNLIP|p.L103M|1|0.18|ENSG00000175535|chr10:116548465-116548465|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2998046875 2 613.296462 1224.57837 3.4765 0.0021321 0.79896 0.00049 4.2755 0.0026221 613.2968469840067 99.639 0.21866 99.603 99.477 99.695 -0.036308 26 7 4 0 0 0 0.31022 1 55318 55318 26.884 4.1474 1 26651000 75896 16689 50617 51720 88503 88503 -0.02493581380872456 WMCLAAALASF 11 Unmodified _WMCLAAALASF_ 0 0 0 ENSG00000077616|ENST00000534061|NAALAD2;ENST00000524501.1_1_11:89867926-89868807:+|nuORF;nc|ENSG00000077616|Q9Y3Q0-2|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 ENSG00000077616|ENST00000534061|NAALAD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2855224609375 2 592.285563 1182.55657 NaN NaN NaN NaN NaN NaN NaN 17.38 1 17.38 16.88 17.88 0 0 0 0 0.9435 1 8558 8558 0 0 1 75897 1223 50618 51721 88504 88504 -0.027403861294942544 WMDLSIFRQWF 11 Unmodified _WMDLSIFRQWF_ 0 0 0 ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL ENSG00000183340|ENST00000332349|JRKL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.25 3 510.251707 1527.73329 -0.77511 -0.0003955 -1.7457 -0.00089076 -2.5208 -0.0012863 510.250846717058 18.355 0.11751 18.378 18.308 18.425 0.023106 46 21 3 0 0 0 0.73992 1 9171 9171 0.50596 0.41111 1 696340 75898 9139 50619 51722 88505 88505 -0.009466339748087194 WMDSFDEDF 9 Unmodified _WMDSFDEDF_ 0 0 0 ENST00000411753.1_1_3:31495879-31496380:+|nuORF ENST00000411753.1_1_3:31495879-31496380:+|nuORF ENST00000411753.1_1_3:31495879-31496380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8144836425781 3 397.814823 1190.42264 0.45389 0.00018057 -1.2183 -0.00048467 -0.76443 -0.0003041 397.8143648727859 60.324 0.50876 60.324 60.094 60.603 0 33 19 3 0 0 0 0.58865 1 33663 33663 1.0715 0.29493 1 2069600 75899 12978 50620 51723 88506 88506 -0.16495373421321347 WMDSLKNLF 9 Unmodified _WMDSLKNLF_ 0 0 0 ENST00000558551.1_1_14:103803061-103803187:+|nuORF ENST00000558551.1_1_14:103803061-103803187:+|nuORF ENST00000558551.1_1_14:103803061-103803187:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2933349609375 2 577.289159 1152.56377 0.86518 0.00049946 -0.073784 -4.2595E-05 0.79139 0.00045686 577.2893287199877 61.875 1.682 55.7 54.566 56.248 -6.1757 204 90 5 0 0 0 0.21643 1 39264 39264 21.537 1.0834 1 647760000 75900 15279 50621 51724 88507 88507 -0.006413302573719193 WMEWRRPRPQY 11 Unmodified _WMEWRRPRPQY_ 0 0 0 ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF ENST00000489097.5_1_1:6527238-6527559:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.9364624023438 3 535.601622 1603.78304 0.034424 1.8438E-05 0.21127 0.00011316 0.2457 0.0001316 535.6025919083567 85.015 0.75961 78.84 78.333 79.093 -6.1757 125 45 4 0 0 0 0.73115 2 55814 55664;55814 0.45452 0 1 55831000 75901 14232 50622 51725 88508;88509 88509 0.00529493753879251 WMFWSRYL 8 Unmodified _WMFWSRYL_ 0 0 0 REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7865600585938 2 594.786587 1187.55862 -0.32172 -0.00019135 0.63601 0.00037829 0.31429 0.00018694 594.7867369184952 23.033 0.15208 23.033 22.955 23.107 0 10 7 2 0 0 0 0.80383 1 11748 11748 0.79363 0 1 301710 + 75902 23988 50623 51726 88510 88510 -0.027655893293058398 WMGQQSQF 8 Unmodified _WMGQQSQF_ 0 0 0 REV__ENST00000489441.5_1_18:61160306-61160345:+|nuORF REV__ENST00000489441.5_1_18:61160306-61160345:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.7236633300781 2 506.221277 1010.428 -0.8993 -0.00045524 1.0064 0.00050948 0.10714 5.4235E-05 506.2221342508303 77.366 0.63503 76.884 76.58 77.215 -0.4826 123 29 7 0 0 0 0.80232 1 42322 42322 5.2307 0 1 11515000 + 75903 27862 50624 51727 88511 88511 -0.07679605048167559 WMGWKDRWGQE 11 Unmodified _WMGWKDRWGQE_ 0 0 0 ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;nc|ENSG00000204580|Q08345-4|DDR1;ENST00000431373.1_1_6:30853540-30859007:+|nuORF ENSG00000204580|ENST00000376568|DDR1 ENSG00000204580|ENST00000376568|DDR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2465209960938 3 493.559311 1477.6561 -0.36588 -0.00018058 -0.83145 -0.00041037 -1.1973 -0.00059095 493.55901503267586 18.051 0.084328 18.065 18.04 18.125 0.013865 33 15 3 0 0 0 0.74244 1 9020 9020 0.073264 0 1 1896100 75904 10304 50625 51728 88512 88512 -0.06361852191162143 WMKNQSEF 8 Unmodified _WMKNQSEF_ 0 0 0 REV__ENSG00000114656|ENST00000645291|CFAP92 REV__ENSG00000114656|ENST00000645291|CFAP92 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2425537109375 2 535.242209 1068.46987 NaN NaN NaN NaN NaN NaN NaN 92.096 1 91.616 91.116 92.116 -0.48092 0 0 0 0.97444 1 50343 50343 0.79363 0 1 + 75905 18926 50626 51729 88513 88513 -0.061630493596339875 WMKWCWSF 8 Unmodified _WMKWCWSF_ 0 0 0 nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8;nc|ENSG00000130821|P48029-2|SLC6A8;ENST00000485324.1_1_X:152959908-152960666:+|nuORF;nc|ENSG00000130821|P48029-3|SLC6A8;ENST00000431994.5_1_16:32890029-32891910:-|nuORF nc|ENSG00000130821|P48029-4|SLC6A8 nc|ENSG00000130821|P48029-4|SLC6A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.2550048828125 2 587.254065 1172.49358 0.40145 0.00023575 0.018964 1.1137E-05 0.42041 0.00024689 587.2538910348387 88.089 0.26652 87.585 87.507 87.774 -0.50423 20 10 3 0 0 0 0.80975 1 48219 48219 0.79363 0 1 396710 75906 4268 50627 51730 88514 88514 -0.08576907126825972 WMLCVFTV 8 Unmodified _WMLCVFTV_ 0 0 0 ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A ENSG00000196187|ENST00000366835|TMEM63A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.5522155761719 2 499.745542 997.476531 0.33026 0.00016505 0.035254 1.7618E-05 0.36551 0.00018266 499.746521611225 64.117 0.56829 64.117 63.709 64.277 0 46 23 3 0 0 0 8.7369 1 35764 35764 10.183 1.5901 1 1062600 75907 9775 50628 51731 88515 88515 -0.022308277326146708 WMMPCRAREFT 11 Unmodified _WMMPCRAREFT_ 0 0 0 ENST00000506866.6_1_4:140454428-140468080:-|nuORF ENST00000506866.6_1_4:140454428-140468080:-|nuORF ENST00000506866.6_1_4:140454428-140468080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 714.3218383789062 2 714.322685 1426.63082 -0.012204 -8.7178E-06 -0.68111 -0.00048653 -0.69332 -0.00049525 714.3222373139002 77.877 0.38884 77.877 77.712 78.101 0 65 17 5 0 0 0 0.6889 1 43344 43344 5.2969 2.3016 1 11006000 75908 14530 50629 51732 88516 88516 -0.06543366309597332 WMMYWIVF 8 Unmodified _WMMYWIVF_ 0 0 0 nc|ENSG00000165476|Q6NUK4-2|REEP3;ENSG00000165476|ENST00000373758|REEP3;ENST00000519875.1_1_8:21997686-21998995:-|nuORF;ENST00000464751.6_1_5:137774897-137779354:+|nuORF;ENST00000510467.5_1_5:137774897-137780649:+|nuORF;nc|ENSG00000132563|Q9BRK0|REEP2;ENSG00000132563|ENST00000378339|REEP2;nc|ENSG00000168476|Q9H6H4-2|REEP4;ENST00000519074.5_1_8:21996670-21998995:-|nuORF;ENSG00000168476|ENST00000306306|REEP4 nc|ENSG00000165476|Q6NUK4-2|REEP3;nc|ENSG00000168476|Q9H6H4-2|REEP4 nc|ENSG00000168476|Q9H6H4-2|REEP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2750854492188 2 588.274467 1174.53438 0.092616 5.4483E-05 -0.63435 -0.00037317 -0.54173 -0.00031869 588.2740808262253 80.261 0.28993 80.261 80.118 80.408 0 29 14 3 0 0 0 0.80624 1 44552 44552 2.8892 0.15402 1 781670 75909 7768;7342 50630 51733 88517 88517 -0.04590565807211533 WMNANEYQFD 10 Unmodified _WMNANEYQFD_ 0 0 0 REV__ENST00000462144.1_1_19:12771887-12774226:-|nuORF REV__ENST00000462144.1_1_19:12771887-12774226:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.844970703125 3 439.845005 1316.51319 NaN NaN NaN NaN NaN NaN NaN 9.4319 1 9.4495 8.9495 9.9495 0.017581 0 0 0 1.0061 1 4679 4679 0 0 1 + 75910 18371 50631 51734 88518 88518 -0.13240904373060403 WMNPRRFLWKW 11 Unmodified _WMNPRRFLWKW_ 0 0 0 ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF ENST00000429378.5_3_16:242971-256079:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 810.425537109375 2 810.424448 1618.83434 NaN NaN NaN NaN NaN NaN NaN 61.733 1 55.557 55.057 56.057 -6.1757 0 0 0 0.94301 1 39782 39782 0.35063 0 1 75911 13219 50632 51735 88519 88519 0.049678625185606506 WMNQGHDWF 9 Unmodified _WMNQGHDWF_ 0 0 0 REV__ENST00000431461.1_1_6:110530298-110530412:+|nuORF REV__ENST00000431461.1_1_6:110530298-110530412:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5032958984375 3 407.502914 1219.48691 0.81417 0.00033178 0.26051 0.00010616 1.0747 0.00043793 407.50296862204914 43.355 0.71561 38.59 38.304 39.019 -4.7648 88 47 2 0 0 0 0.58466 1 26435 26435 1.1933 0 1 128710000 + 75912 26977 50633 51736 88520 88520 -0.11405128753858662 WMPMFQRRRRR 11 Unmodified _WMPMFQRRRRR_ 0 0 0 ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.6273193359375 3 540.625996 1618.85616 0.36271 0.00019609 0.95225 0.00051481 1.315 0.0007109 540.6266344457538 48.375 0.23543 48.331 48.198 48.434 -0.04369 16 11 2 0 0 0 0.7453 1 26112 26112 0 0 1 2642500 75913 2353 50634 51737 88521 88521 0.07148343995459072 WMPMFQRRRRR 11 Unmodified _WMPMFQRRRRR_ 0 0 0 ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP ENSG00000105697|ENST00000222304|HAMP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5486755371094 4 405.721316 1618.85616 0.13764 5.5845E-05 0.65179 0.00026444 0.78943 0.00032029 405.72179136768403 48.369 0.19621 48.325 48.218 48.415 -0.04369 14 9 2 0 0 0 0.30605 1 26140 26140 0 0 1 2150400 75914 2353 50634 51737 88522 88522 0.07148343995459072 WMPYIVICF 9 Unmodified _WMPYIVICF_ 0 0 0 ENSG00000054277|ENST00000366554|OPN3;nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF ENSG00000054277|ENST00000366554|OPN3 ENSG00000054277|ENST00000366554|OPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.287353515625 2 586.287574 1170.56059 0.33922 0.00019888 -1.0595 -0.00062119 -0.72031 -0.00042231 586.2869605410343 91.653 0.30624 91.172 91.045 91.351 -0.48092 34 21 2 0 0 0 0.53666 1 50079 50079 5.2307 0.90143 1 683920 75915 757 50635 51738 88523 88523 -0.01786296635737017 WMQKDLEE 8 Unmodified _WMQKDLEE_ 0 0 0 nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS nc|ENSG00000119509|Q9Y283-2|INVS nc|ENSG00000119509|Q9Y283-2|INVS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7469482421875 2 539.747324 1077.4801 NaN NaN NaN NaN NaN NaN NaN 14.095 1 14.102 13.602 14.602 0.0073986 0 0 0 0.97444 1 6975 6975 0.69038 0.088878 1 75916 3440 50636 51739 88524 88524 -0.055544864250805404 WMRNESDF 8 Unmodified _WMRNESDF_ 0 0 0 REV__nc|ENSG00000203722|Q6H3X3-2|RAET1G REV__nc|ENSG00000203722|Q6H3X3-2|RAET1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7305297851562 2 542.729466 1083.44438 0.19007 0.00010316 0.58902 0.00031968 0.77909 0.00042283 542.7296985151265 76.003 0.26958 75.523 75.369 75.639 -0.47945 14 11 2 0 0 0 0.80975 1 41662 41662 0.79363 0 1 699240 + 75917 24117 50637 51740 88525 88525 -0.09400523882072775 WMRWCCSYRWF 11 Unmodified _WMRWCCSYRWF_ 0 0 0 REV__ENST00000591087.1_1_19:46144824-46145007:+|nuORF REV__ENST00000591087.1_1_19:46144824-46145007:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 812.3474731445312 2 812.343951 1622.67335 NaN NaN NaN NaN NaN NaN NaN 90.449 1 90.449 89.949 90.949 0 0 0 0 0.9435 1 50040 50040 0 0 1 + 75918 29157 50638 51741 88526 88526 -0.11307971181372523 WMSWEGFDA 9 Unmodified _WMSWEGFDA_ 0 0 0 REV__ENST00000460567.5_1_3:67425855-67425930:-|nuORF REV__ENST00000460567.5_1_3:67425855-67425930:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.7264404296875 2 564.726392 1127.43823 NaN NaN NaN NaN NaN NaN NaN 13.894 1 13.901 13.401 14.401 0.0073986 0 0 0 0.8622 1 6867 6867 0 0 1 + 75919 27298 50639 51742 88527 88527 -0.12039042113565301 WMTRMIAKL 9 Unmodified _WMTRMIAKL_ 0 0 0 REV__ENSG00000153395|ENST00000283415|LPCAT1 REV__ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3216552734375 2 575.317197 1148.61984 0.10578 6.0857E-05 4.1804 0.0024051 4.2862 0.0024659 575.8200919942757 39.284 0.32774 38.997 38.836 39.164 -0.28687 36 15 3 0 0 0 0.55775 1 20803 20803 3.9444 0.66309 1 6667000 + 75920 21170 50640 51743 88528 88528 0.051475993784606544 WMWRGLTF 8 Unmodified _WMWRGLTF_ 0 0 0 ENSG00000188735|ENST00000449592|TMEM120B;ENST00000484946.5_1_7:75616732-75616939:-|nuORF;ENST00000440632.5_1_7:75616492-75617528:-|nuORF;ENST00000417509.5_1_7:75616545-75617528:-|nuORF;ENSG00000189077|ENST00000493111|TMEM120A ENSG00000188735|ENST00000449592|TMEM120B ENSG00000188735|ENST00000449592|TMEM120B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.77490234375 2 548.77348 1095.53241 0.50569 0.00027751 2.5893 0.0014209 3.095 0.0016984 548.77512821433 58.898 0.26051 58.838 58.661 58.922 -0.060719 18 12 2 0 0 0 0.70294 1 32107 32107 16.942 0.79319 1 1644700 75921 9689 50641 51744 88529 88529 -0.011538585008111113 WMWVHERLEKW 11 Unmodified _WMWVHERLEKW_ 0 0 0 REV__ENSG00000221963|ENST00000409652|APOL6 REV__ENSG00000221963|ENST00000409652|APOL6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4015502929688 2 800.398096 1598.78164 NaN NaN NaN NaN NaN NaN NaN 88.376 1 88.429 87.929 88.929 0.053352 0 0 0 0.94301 1 49166 49166 0.35063 0.35063 1 + 75922 24368 50642 51745 88530 88530 0.006198596650847321 WMWWLFSFFIK 11 Unmodified _WMWWLFSFFIK_ 0 0 0 ENST00000553816.5_1_14:68151682-68162420:-|nuORF;ENST00000554493.1_1_14:68129224-68156947:-|nuORF;ENST00000553582.5_1_14:68129224-68156858:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11 ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11 nc|ENSG00000072042|Q8TC12-3|RDH11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.4553527832031 4 398.454614 1589.78935 -0.42692 -0.00017011 2.1594 0.00086044 1.7325 0.00069033 398.4552385775976 85.983 0.26867 86.044 85.931 86.2 0.061638 25 17 3 0 0 0 0.71938 1 47618 47618 2.4348 1.1051 1 40367000 75923 15197;1068 50643 51746 88531 88531 0.018046189326469175 WNAVCVRCKL 10 Unmodified _WNAVCVRCKL_ 0 0 0 ENST00000468507.1_1_1:157648751-157659660:-|nuORF ENST00000468507.1_1_1:157648751-157659660:-|nuORF ENST00000468507.1_1_1:157648751-157659660:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 398.2097778320312 3 397.875694 1190.60525 NaN NaN NaN NaN NaN NaN NaN 19.53 1 16.873 16.373 17.373 -2.6564 0 0 0 0.83398 1 10353 10353 6.1918 0.89496 1 75924 13812 50644 51747 88532 88532 0.017575272303247402 WNAVVQSQ 8 Unmodified _WNAVVQSQ_ 0 0 0 ENST00000565236.1_1_16:28500672-28503080:-|nuORF ENST00000565236.1_1_16:28500672-28503080:-|nuORF ENST00000565236.1_1_16:28500672-28503080:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2364196777344 2 466.235242 930.45593 0.43968 0.00020499 1.5399 0.00071794 1.9795 0.00092293 466.23581073629805 52.935 0.19816 52.872 52.742 52.94 -0.063423 14 9 2 0 0 0 0.80143 1 28701 28701 5.7604 0 1 1373300 75925 15401 50645 51748 88533 88533 -0.012079587964194616 WNDEQLNFF 9 Unmodified _WNDEQLNFF_ 0 0 0 REV__ENSG00000196569|ENST00000421865|LAMA2 REV__ENSG00000196569|ENST00000421865|LAMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8485107421875 3 404.848856 1211.52474 -0.55989 -0.00022667 -0.071226 -2.8836E-05 -0.63111 -0.00025551 404.84895189629214 26.173 0.19623 26.173 26.087 26.283 0 27 11 3 0 0 0 0.37578 1 13441 13441 13.615 6.5131 1 4828700 + 75926 23847 50646 51749 88534 88534 -0.07256339287368974 WNDEQLNFF 9 Unmodified _WNDEQLNFF_ 0 0 0 REV__ENSG00000196569|ENST00000421865|LAMA2 REV__ENSG00000196569|ENST00000421865|LAMA2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 404.848856 1211.52474 -0.55989 -0.00022667 -0.071226 -2.8836E-05 -0.63111 -0.00025551 404.84895189629214 26.173 0.19623 26.173 26.087 26.283 0 0 0 NaN 13.615 27 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4828700 + 75927 23847 50646 51749 -0.07256339287368974 WNEGCNFCFQR 11 Unmodified _WNEGCNFCFQR_ 0 0 0 REV__ENSG00000166233|ENST00000379887|ARIH1 REV__ENSG00000166233|ENST00000379887|ARIH1 MSMS AL20221201_MKP_PDAC_01 4 468.1920166015625 3 468.525501 1402.55467 NaN NaN NaN NaN NaN NaN NaN 88.798 1 82.622 82.122 83.122 -6.1757 0 0 0 0.93984 1 58596 58596 2.6312 1.4164 1 + 75928 22096 50647 51750 88535 88535 -0.13050046885359734 WNELGKTSSF 10 Unmodified _WNELGKTSSF_ 0 0 0 nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A nc|ENSG00000090905|Q8NDV7-2|TNRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7823486328125 2 584.785296 1167.55604 0.05252 3.0713E-05 -2.8422 -0.0016621 -2.7896 -0.0016313 584.7837076624576 31.225 0.26815 31.225 31.071 31.339 0 32 12 3 0 0 0 0.23548 1 16227 16227 31.268 0 1 3626300 75929 1572 50648 51751 88536 88536 -0.021037662532762624 WNEVESLYI 9 Unmodified _WNEVESLYI_ 0 0 0 REV__ENSG00000152127|ENST00000281923|MGAT5 REV__ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7813720703125 2 576.782222 1151.54989 0.65362 0.000377 -1.1664 -0.00067274 -0.51275 -0.00029575 576.781777685232 82.9 0.24379 82.403 82.244 82.488 -0.49751 15 10 2 0 0 0 0.55144 1 45393 45393 4.3292 0 1 821590 + 75930 21104 50649 51752 88537 88537 -0.019822844848022214 WNEVESLYI 9 Unmodified _WNEVESLYI_ 0 0 0 REV__ENSG00000152127|ENST00000281923|MGAT5 REV__ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.7848510742188 2 576.782222 1151.54989 1.2588 0.00072605 2.1862 0.001261 3.445 0.001987 576.7831219488531 90.886 0.58799 84.71 84.406 84.994 -6.1757 62 34 2 0 0 0 0.36964 1 60103 60103 13.906 2.2658 1 17090000 + 75931 21104 50649 51752 88538 88538 -0.019822844848022214 WNEVESLYI 9 Unmodified _WNEVESLYI_ 0 0 0 REV__ENSG00000152127|ENST00000281923|MGAT5 REV__ENSG00000152127|ENST00000281923|MGAT5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 576.782222 1151.54989 0.65362 0.000377 -1.1664 -0.00067274 -0.51275 -0.00029575 576.781777685232 82.9 0.24379 82.403 82.244 82.488 -0.49751 0.018606 -0.00099529 NaN 4.3292 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 821590 + 75932 21104 50649 51752 -0.019822844848022214 WNEYSIYL 8 Unmodified _WNEYSIYL_ 0 0 0 nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2 nc|ENSG00000196663|O15040-2|TECPR2 nc|ENSG00000196663|O15040-2|TECPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.762939453125 2 544.258382 1086.50221 0.2087 0.00011359 4.3149 0.0023484 4.5236 0.002462 544.2611433515581 80.868 0.32837 80.868 80.717 81.046 0 29 15 3 0 0 0 0.80143 1 44956 44956 5.7604 2.8712 1 775020 75933 9857 50650 51753 88539 88539 -0.037579386849984076 WNFVPMRF 8 Unmodified _WNFVPMRF_ 0 0 0 REV__nc|ENSG00000157827|Q96PY5|FMNL2 REV__nc|ENSG00000157827|Q96PY5|FMNL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.770751953125 2 548.77348 1095.53241 -0.065587 -3.5992E-05 -1.7243 -0.00094625 -1.7899 -0.00098224 548.7715776183936 23.118 0.11118 23.118 23.071 23.182 0 9 5 2 0 0 0 0.80992 1 11783 11783 0.69038 0.088878 1 162790 + 75934 21402 50651 51754 88540 88540 -0.011538585008111113 WNHYPVRRY 9 Unmodified _WNHYPVRRY_ 0 0 0 REV__nc|ENSG00000112541|Q9Y233-1|PDE10A REV__nc|ENSG00000112541|Q9Y233-1|PDE10A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8887634277344 3 430.887868 1289.64177 NaN NaN NaN NaN NaN NaN NaN 35.789 1 35.789 35.289 36.289 0 0 0 0 0.85737 1 18940 18940 0.26902 0 1 + 75935 18824 50652 51755 88541 88541 0.00853863442898728 WNILAKEYI 9 Unmodified _WNILAKEYI_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|165|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|165|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.8822326660156 3 383.881608 1148.623 0.59962 0.00023018 0.77433 0.00029725 1.3739 0.00052743 383.8817779199451 47.824 0.12873 47.471 47.387 47.516 -0.3526 8 5 2 0 0 0 0.30562 1 25662 25662 11.495 2.5185 1 3094700 + 75936 29364 50653 51756 88542 88542 0.054628890284675435 WNILAKEYI 9 Unmodified _WNILAKEYI_ 0 0 0 REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|165|3|sense REV__HERV35I-int_dup77|chr3:106541134-106546233:+|1.6056445900347809|0.1976016791882729|3.02|175.0|165|3|sense MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 383.881608 1148.623 0.59962 0.00023018 0.77433 0.00029725 1.3739 0.00052743 383.8817779199451 47.824 0.12873 47.471 47.387 47.516 -0.3526 -0.017945 0.00012971 NaN 11.495 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3094700 + 75937 29364 50653 51756 0.054628890284675435 WNKFCNKMSI 10 Unmodified _WNKFCNKMSI_ 0 0 0 REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.20654296875 3 424.207221 1269.59983 0.60811 0.00025796 -1.2772 -0.0005418 -0.66909 -0.00028383 424.2067724523903 30.31 0.17943 30.229 30.128 30.308 -0.080429 16 6 3 0 0 0 0.49559 1 15743 15743 16.566 6.8016 1 2048100 + 75938 28122 50654 51757 88543 88543 -0.024181963521414218 WNKFCNKMSI 10 Unmodified _WNKFCNKMSI_ 0 0 0 REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF REV__ENST00000515280.5_1_6:71123313-71136394:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.5293579101562 3 424.207221 1269.59983 NaN NaN NaN NaN NaN NaN NaN 30.061 1 29.981 29.481 30.481 -0.080429 0 0 0 0.78689 1 15588 15588 12.873 7.9756 1 + 75939 28122 50654 51757 88544 88544 -0.024181963521414218 WNKPWQNLAI 10 Unmodified _WNKPWQNLAI_ 0 0 0 REV__nc|ENSG854|P10265|ERVK-10_pro REV__nc|ENSG854|P10265|ERVK-10_pro MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.20654296875 3 423.89614 1268.66659 0.58446 0.00024775 -1.89 -0.00080116 -1.3055 -0.00055341 423.8951234892471 30.361 0.15426 30.28 30.205 30.359 -0.080429 9 5 2 0 0 0 0.23767 1 15743 15743 6.1918 0.89496 1 934930 + 75940 29381 50655 51758 88545 88545 0.04300498525617513 WNKRLEEVK 9 Unmodified _WNKRLEEVK_ 0 0 0 ENSG00000140057|ENST00000267584|AK7 ENSG00000140057|ENST00000267584|AK7 ENSG00000140057|ENST00000267584|AK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2293701171875 3 401.227779 1200.66151 0.18481 7.415E-05 3.658 0.0014677 3.8428 0.0015418 401.2294509146359 40.053 0.27568 40.059 39.873 40.149 0.0050545 18 12 2 0 0 0 0.55144 1 21347 21347 2.4985 1.427 1 1670300 75941 5207 50656 51759 88546 88546 0.06920194662984613 WNLKVSWE 8 Unmodified _WNLKVSWE_ 0 0 0 REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF REV__ENST00000554156.5_1_14:77924532-77928597:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.273681640625 2 531.274367 1060.53418 0.24903 0.0001323 -1.8921 -0.0010052 -1.6431 -0.00087295 531.7746561835775 75.074 0.46759 75.12 74.984 75.452 0.045967 36 22 2 0 0 0 0.28079 1 41375 41375 57.471 7.5383 1 6504000 + 75942 18083 50657 51760 88547 88547 0.006334737888209929 WNLKYLHRF 9 Unmodified _WNLKYLHRF_ 0 0 0 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.57080078125 3 426.236497 1275.68766 0.002668 1.1372E-06 -0.22304 -9.5069E-05 -0.22037 -9.3932E-05 426.23655137113815 54.603 0.23286 54.136 53.989 54.222 -0.46664 19 11 2 0 0 0 0.57757 1 29575 29575 2.7352 0.64919 1 2602800 75943 5755 50658 51761 88548 88548 0.06084508625099261 WNLKYLHRF 9 Unmodified _WNLKYLHRF_ 0 0 0 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 ENSG00000146109|ENST00000274849|ABT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 426.236497 1275.68766 0.056219 2.3963E-05 -1.5927 -0.00067886 -1.5365 -0.0006549 426.2361226377286 54.239 0.23774 54.172 54.062 54.299 -0.066936 0.018111 -0.0011954 NaN 2.7352 22 11 4 NaN NaN NaN NaN 0 NaN NaN 0 1631600 75944 5755 50658 51761 0.06084508625099261 WNLSFKNTF 9 Unmodified _WNLSFKNTF_ 0 0 0 REV__ENSG00000151952|ENST00000422113|TMEM132D REV__ENSG00000151952|ENST00000422113|TMEM132D MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8306274414062 2 578.792924 1155.57129 1.0358 0.0005995 -4.4659 -0.0025848 -3.4301 -0.0019853 579.2940417686347 92.291 0.70368 86.115 85.596 86.299 -6.1757 72 41 2 0 0 0 0.25681 1 60677 60677 19.257 2.1441 1 32387000 + 75945 21098 50659 51762 88549 88549 -0.0002685466542970971 WNLTAGCV 8 Unmodified _WNLTAGCV_ 0 0 0 nc|ENSG00000148204|Q5IJ48-3|CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 nc|ENSG00000148204|Q5IJ48-3|CRB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2084350585938 2 432.207638 862.400723 0.87374 0.00037764 0.95595 0.00041317 1.8297 0.00079081 432.2078473119343 63.225 0.42549 57.049 56.896 57.322 -6.1757 39 24 2 0 0 0 0.6895 2 40922 40792;40922 18.135 8.2276 1 23622000 75946 5903 50660 51763 88550;88551 88551 -0.03598088588557857 WNLYSVPRI 9 Unmodified _WNLYSVPRI_ 0 0 0 nc|ENSG00000052795|Q9P278-2|FNIP2;ENSG00000052795|ENST00000264433|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 nc|ENSG00000052795|Q9P278-2|FNIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.3168334960938 2 574.316566 1146.61858 0.24249 0.00013927 1.9735 0.0011334 2.216 0.0012727 574.3164884002631 54.492 0.94158 54.425 53.901 54.843 -0.06694 156 46 5 0 0 0 0.14602 1 29519 29519 28.487 0 1 114530000 75947 740 50661 51764 88552 88552 0.05113424605565342 WNNCQRRNFI 10 Unmodified _WNNCQRRNFI_ 0 0 0 REV__ENST00000417626.6_1_3:50325358-50325592:-|nuORF REV__ENST00000417626.6_1_3:50325358-50325592:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8287963867188 2 675.827837 1349.64112 NaN NaN NaN NaN NaN NaN NaN 71.343 1 71.343 70.843 71.843 0 0 0 0 0.99008 1 39740 39740 3.5965 2.1146 1 + 75948 26789 50662 51765 88553 88553 -0.019712992684617348 WNNGYAFNYTF 11 Unmodified _WNNGYAFNYTF_ 0 0 0 REV__ENSG00000205038|ENST00000378402|PKHD1L1 REV__ENSG00000205038|ENST00000378402|PKHD1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2043762207031 3 466.20341 1395.5884 0.57099 0.0002662 1.4789 0.00068947 2.0499 0.00095566 466.20436003608654 52.768 0.34048 52.705 52.542 52.882 -0.063423 33 16 3 0 0 0 0.71503 1 28612 28612 2.8433 0 1 2774400 + 75949 24211 50663 51766 88554 88554 -0.09356978850291853 WNNITKLQL 9 Unmodified _WNNITKLQL_ 0 0 0 ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF ENSG00000035681|ENST00000038176|NSMAF ENSG00000035681|ENST00000038176|NSMAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.2169494628906 3 377.216991 1128.62914 -0.45733 -0.00017251 -2.835 -0.0010694 -3.2923 -0.0012419 377.2159913839692 19.761 0.087234 19.789 19.713 19.801 0.028355 7 5 2 0 0 0 0.55775 1 9977 9977 2.2828 0.5405 1 342390 75950 616 50664 51767 88555 88555 0.0699740725999618 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1493225097656 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 0.28068 1 0.28068 -0.21932 0.78068 0 0 0 0 0.97444 1 140 140 0 0 1 + 75951 27179 50665 51768 88556 88556 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1488342285156 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 2.676 1 2.676 2.176 3.176 0 0 0 0 0.97444 1 1299 1299 0 0 1 + 75952 27179 50665 51768 88557 88557 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.1495971679688 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 3.8063 1 3.8063 3.3063 4.3063 0 0 0 0 0.97444 1 1843 1843 0 0 1 + 75953 27179 50665 51768 88558 88558 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1494750976562 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 4.1314 1 4.0586 3.5586 4.5586 -0.072869 0 0 0 0.97444 1 2041 2041 0 0 1 + 75954 27179 50665 51768 88559 88559 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1496276855469 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 5.922 1 5.8445 5.3445 6.3445 -0.07749 0 0 0 0.97444 1 2923 2923 0 0 1 + 75955 27179 50665 51768 88560 88560 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1500244140625 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 6.2813 1 6.1967 5.6967 6.6967 -0.08463 0 0 0 0.97444 1 3102 3102 0 0 1 + 75956 27179 50665 51768 88561 88561 -0.12691150079956515 WNPCGCGA 8 Unmodified _WNPCGCGA_ 0 0 0 REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF REV__ENST00000448759.1_1_1:43352460-43353038:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.1494140625 2 404.149266 806.283979 NaN NaN NaN NaN NaN NaN NaN 13.869 1 13.821 13.321 14.321 -0.048298 0 0 0 0.97444 1 6728 6728 0 0 1 + 75957 27179 50665 51768 88562 88562 -0.12691150079956515 WNPLLYPVL 9 Unmodified _WNPLLYPVL_ 0 0 0 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 ENSG00000172464|ENST00000544374|OR5AP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2134399414062 3 372.214699 1113.62227 NaN NaN NaN NaN NaN NaN NaN 39.307 1 39.318 38.818 39.818 0.011452 0 0 0 0.43505 1 20932 20932 12.241 2.0901 1 75958 8222 50666 51769 88563 88563 0.07000094379418442 WNPRRWWRWCW 11 Unmodified _WNPRRWWRWCW_ 0 0 0 ENST00000564348.5_1_19:7982609-7983760:+|nuORF;ENST00000566166.1_1_19:7982552-7983971:+|nuORF ENST00000564348.5_1_19:7982609-7983760:+|nuORF ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 866.4168701171875 2 866.414946 1730.81534 NaN NaN NaN NaN NaN NaN NaN 34.025 1 30.04 29.54 30.54 -3.9853 0 0 0 0.9435 1 19568 19568 0 0 1 75959 15382 50667 51770 88564 88564 -0.0208367405248282 WNRFLILIF 9 Unmodified _WNRFLILIF_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.9106750488281 3 407.90961 1220.707 1.9116 0.00077976 0.41651 0.0001699 2.3281 0.00094966 407.90964825857344 95.401 0.33336 95.405 95.265 95.599 0.0041504 39 12 4 0 0 0 0.18144 2 52986 52986;53093 24.991 0 1 9536700 75960 11358 50668 51771 88565;88566 88565 0.10547464916044191 WNRFLILIF 9 Unmodified _WNRFLILIF_ 0 0 0 ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF ENST00000268712.7_1_17:16075166-16089874:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3634033203125 2 611.360776 1220.707 2.3744 0.0014516 1.191 0.00072811 3.5654 0.0021798 611.361536810568 95.427 0.33336 95.431 95.265 95.599 0.004158 30 12 3 0 0 0 0.13231 1 52993 52993 32.305 0 1 5020400 75961 11358 50668 51771 88567 88567 0.10547464916044191 WNRFYDDDRFR 11 Unmodified _WNRFYDDDRFR_ 0 0 0 REV__ENSG00000152377|ENST00000394945|SPOCK1 REV__ENSG00000152377|ENST00000394945|SPOCK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2476196289062 3 530.579651 1588.71712 NaN NaN NaN NaN NaN NaN NaN 4.4754 1 4.4691 3.9691 4.9691 -0.0062971 0 0 0 0.9435 1 2264 2264 0 0 1 + 75962 21112 50669 51772 88568 88568 -0.05368623887375179 WNRFYDDDRFR 11 Unmodified _WNRFYDDDRFR_ 0 0 0 REV__ENSG00000152377|ENST00000394945|SPOCK1 REV__ENSG00000152377|ENST00000394945|SPOCK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.5797729492188 3 530.579651 1588.71712 NaN NaN NaN NaN NaN NaN NaN 5.1774 1 5.1785 4.6785 5.6785 0.0010915 0 0 0 0.9435 1 2609 2609 0 0 1 + 75963 21112 50669 51772 88569 88569 -0.05368623887375179 WNRWFTPF 8 Unmodified _WNRWFTPF_ 0 0 0 REV__ENST00000461540.2_1_2:62096624-62104153:-|nuORF REV__ENST00000461540.2_1_2:62096624-62104153:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.3348999023438 2 577.282526 1152.5505 0.64785 0.00037399 -1.8232 -0.0010525 -1.1754 -0.00067852 577.280618512669 48.139 0.11783 48.101 48.066 48.184 -0.038647 8 5 2 0 0 0 8.7369 1 25949 25949 12.532 5.2423 1 430920 + 75964 27319 50670 51773 88570 88570 -0.019674002544661562 WNSEEIQQ 8 Unmodified _WNSEEIQQ_ 0 0 0 nc|ENSG00000108523|Q9H6Y7-2|RNF167;ENSG00000108523|ENST00000262482|RNF167;ENST00000572554.1_1_17:4844392-4846237:+|nuORF nc|ENSG00000108523|Q9H6Y7-2|RNF167 nc|ENSG00000108523|Q9H6Y7-2|RNF167 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2333374023438 2 517.232896 1032.45124 NaN NaN NaN NaN NaN NaN NaN 19.208 1 19.208 18.708 19.708 0 0 0 0 0.97444 1 9593 9593 2.0598 0 1 75965 2578 50671 51774 88571 88571 -0.06368887729854578 WNSEWFKF 8 Unmodified _WNSEWFKF_ 0 0 0 nc|ENSG00000111731|Q86YS7-4|C2CD5;ENST00000541310.5_1_12:22631189-22697084:-|nuORF;nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5;ENST00000535304.1_1_12:22688182-22697084:-|nuORF nc|ENSG00000111731|Q86YS7-4|C2CD5 nc|ENSG00000111731|Q86YS7-4|C2CD5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.2206115722656 3 381.846787 1142.51853 1.6414 0.00062678 0.77023 0.00029411 2.4117 0.00092089 381.8472344301023 21.363 0.67858 18.628 18.222 18.9 -2.7348 107 51 3 0 0 0 0.80232 1 11191 11191 3.5965 0.60125 1 9782500 75966 16118 50672 51775 88572 88572 -0.047028127282374044 WNTRLWNDQ 9 Unmodified _WNTRLWNDQ_ 0 0 0 REV__ENSG00000142627|ENST00000358432|EPHA2 REV__ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.5326843261719 3 411.53175 1231.57342 -0.51611 -0.0002124 1.5451 0.00063586 1.029 0.00042346 411.8675528128783 19.192 0.16512 19.215 19.088 19.253 0.023106 16 8 3 0 0 0 0.54444 1 9656 9656 2.7352 0 1 675520 + 75967 20584 50673 51776 88573 88573 -0.033104259276115044 WNTSICLHY 9 Unmodified _WNTSICLHY_ 0 0 0 nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3 nc|ENSG00000173567|Q8IZF5-3|ADGRF3 nc|ENSG00000173567|Q8IZF5-3|ADGRF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5114440917969 3 379.511298 1135.51206 NaN NaN NaN NaN NaN NaN NaN 26.465 1 26.433 25.933 26.933 -0.031708 0 0 0 0.65645 1 13609 13609 10.8 0.64894 1 75968 8339 50674 51777 88574 88574 -0.05027073951282546 WNYIYDKLSV 10 Unmodified _WNYIYDKLSV_ 0 0 0 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12;ENSG00000254521|ENST00000291707|SIGLEC12 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 nc|ENSG00000254521|Q96PQ1-2|SIGLEC12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.8886108398438 3 434.223923 1299.64994 0.29128 0.00012648 -1.6976 -0.00073713 -1.4063 -0.00061065 434.2233596788682 28.666 0.18141 28.695 28.595 28.776 0.029564 9 6 2 0 0 0 0.23767 1 14945 14945 6.1918 3.3486 1 3760400 75969 10776 50675 51778 88575 88575 0.012099528489898148 WNYLQTNCF 9 Unmodified _WNYLQTNCF_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;nc|ENSG00000108582|O75976-2|CPD;ENST00000581826.1_1_17:28766004-28770990:+|nuORF ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.8440551757812 3 396.842936 1187.50698 0.63942 0.00025375 1.8555 0.00073633 2.4949 0.00099008 396.8439557070306 47.663 0.1859 47.31 47.223 47.409 -0.3526 15 8 3 0 0 0 0.58466 1 25577 25577 1.1933 0 1 1683500 75970 2584 50676 51779 88576 88576 -0.07927377813894054 WPAAVPDP 8 Unmodified _WPAAVPDP_ 0 0 0 REV__ENSG00000198670|ENST00000316300|LPA REV__ENSG00000198670|ENST00000316300|LPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7168884277344 2 426.716153 851.417754 0.72313 0.00030857 0.98341 0.00041964 1.7065 0.00072821 426.71659733972774 81.591 0.62408 81.096 80.767 81.392 -0.4952 59 25 3 0 0 0 0.80975 2 44668 44668;44767 0.79363 0.79363 1 1779900 + 75971 24035 50677 51780 88577;88578 88577 -0.01389844711115984 WPAIGFLVL 9 Unmodified _WPAIGFLVL_ 0 0 0 ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS ENSG00000040531|ENST00000046640|CTNS ENSG00000040531|ENST00000046640|CTNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.3025207519531 2 508.302396 1014.59024 0.081913 4.1636E-05 -0.67993 -0.00034561 -0.59802 -0.00030397 508.30219604658475 52.781 0.67736 52.329 52.005 52.682 -0.45173 114 34 5 0 0 0 0.22317 1 28680 28680 20.871 0 1 40309000 75972 651 50678 51781 88579 88579 0.08352726696261925 WPAIIRDGKF 10 Unmodified _WPAIIRDGKF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.5601501464844 3 401.560869 1201.66078 0.60523 0.00024304 -0.60557 -0.00024317 -0.0003393 -1.3625E-07 401.5606869455436 57.75 0.87114 57.684 57.239 58.111 -0.066032 89 43 3 0 0 0 0.56675 3 31388 31388;31487;31603 15.538 11.349 1 2566700 75973 9717 50679 51782 88580;88581;88582 88580 0.06801400013932835 WPAQPQRTF 9 Unmodified _WPAQPQRTF_ 0 0 0 ENSG00000106771|ENST00000374586|TMEM245;nc|ENSG00000106771|Q9H330-3|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 ENSG00000106771|ENST00000374586|TMEM245 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7910766601562 2 565.790715 1129.56688 0.67936 0.00038438 0.53324 0.0003017 1.2126 0.00068607 565.7909885659452 42.547 0.26359 42.538 42.381 42.644 -0.0088196 24 11 3 0 0 0 0.01085 1 22773 22773 96.111 46.178 1 9215600 75974 2456 50680 51783 88583 88583 0.007276809116547156 WPDAFRKY 8 Unmodified _WPDAFRKY_ 0 0 0 ENST00000452075.7_1_10:43047647-43047931:-|nuORF;ENST00000435805.6_1_10:43047647-43047983:-|nuORF ENST00000452075.7_1_10:43047647-43047931:-|nuORF ENST00000452075.7_1_10:43047647-43047931:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.27587890625 2 541.774534 1081.53451 0.23629 0.00012802 -0.10903 -5.9071E-05 0.12726 6.8945E-05 541.774264747761 92.033 0.18839 91.552 91.508 91.697 -0.48092 11 9 2 0 0 0 0.80975 1 50332 50332 0.79363 0 1 324020 75975 13319 50681 51784 88584 88584 -0.0029910649134308187 WPDDKVHKL 9 Unmodified _WPDDKVHKL_ 0 0 0 nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL nc|ENSG00000292339|O95671-3|ASMTL nc|ENSG00000292339|O95671-3|ASMTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.873046875 3 379.873224 1136.59784 -0.70007 -0.00026594 0.28292 0.00010747 -0.41715 -0.00015846 379.87339489091244 28.569 0.21855 28.569 28.402 28.621 0 16 12 2 0 0 0 0.56345 1 14761 14761 4.1895 2.4472 1 1782300 75976 7834 50682 51785 88585 88585 0.035008342259061465 WPDDKVHKL 9 Unmodified _WPDDKVHKL_ 0 0 0 nc|ENSG00000292339|O95671-3|ASMTL;nc|ENSG00000292339|O95671-2|ASMTL;ENSG00000169093|ENST00000381317|ASMTL nc|ENSG00000292339|O95671-3|ASMTL nc|ENSG00000292339|O95671-3|ASMTL MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.2076416015625 3 379.873224 1136.59784 1.0842 0.00041184 -0.17591 -6.6823E-05 0.90825 0.00034502 380.2074042159309 31.695 0.36043 27.999 27.886 28.246 -3.6958 25 19 2 0 0 0 0.32235 1 18035 18035 15.739 12.152 1 14843000 75977 7834 50682 51785 88586 88586 0.035008342259061465 WPDDLQNHTF 10 Unmodified _WPDDLQNHTF_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.7821655273438 2 636.785827 1271.5571 0.80096 0.00051004 -1.8493 -0.0011776 -1.0483 -0.00066756 636.7844550405715 54.45 0.19904 54.45 54.398 54.597 0 14 8 2 0 0 0 0.095786 1 30250 30250 47.594 36.77 1 2245800 75978 10255 50683 51786 88587 88587 -0.06781551884409964 WPDDLQNHTF 10 Unmodified _WPDDLQNHTF_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.783935546875 2 636.785827 1271.5571 -0.031877 -2.0299E-05 -0.1709 -0.00010883 -0.20278 -0.00012913 636.7857659441945 55.082 0.28376 54.604 54.429 54.712 -0.47798 44 13 5 0 0 0 0.0023019 1 29861 29861 106.94 78.446 1 4946600 75979 10255 50683 51786 88588 88588 -0.06781551884409964 WPDDLQNHTF 10 Unmodified _WPDDLQNHTF_ 0 0 0 nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA;ENST00000477541.1_1_6:32918272-32920828:-|nuORF;ENST00000475627.1_1_6:32918275-32920806:-|nuORF nc|ENSG00000204257|P28067|HLA-DMA nc|ENSG00000204257|P28067|HLA-DMA MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.2883911132812 2 636.785827 1271.5571 0.88118 0.00056112 -0.2036 -0.00012965 0.67758 0.00043147 636.7859884909034 61.285 0.37829 55.137 54.959 55.337 -6.1478 27 18 2 0 0 0 0.0030316 1 39441 39441 104.48 73.781 1 37592000 75980 10255 50683 51786 88589 88589 -0.06781551884409964 WPDGQQDITE 10 Unmodified _WPDGQQDITE_ 0 0 0 nc|ENSG00000136286|B0I1T2-4|MYO1G;ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;ENST00000463516.5_1_7:45006053-45008547:-|nuORF nc|ENSG00000136286|B0I1T2-4|MYO1G nc|ENSG00000136286|B0I1T2-4|MYO1G MSMS AL20221201_MKP_PDAC_01 4 396.8441162109375 3 396.84377 1187.50948 NaN NaN NaN NaN NaN NaN NaN 0.87753 1 -1.6044 -2.1044 -1.1044 -2.482 0 0 0 1.0061 1 460 460 0 0 1 75981 4813 50684 51787 88590 88590 -0.07677250875258324 WPEEGKLREY 10 Unmodified _WPEEGKLREY_ 0 0 0 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2191162109375 3 436.21906 1305.63535 0.17628 7.6895E-05 -0.066807 -2.9143E-05 0.10947 4.7752E-05 436.2189306576596 37.536 0.31339 37.536 37.389 37.702 0 43 16 3 0 0 0 0.2125 1 19953 19953 32.616 20.442 1 16374000 75982 10301 50685 51788 88591 88591 -0.005241192991434218 WPEEGKLREY 10 Unmodified _WPEEGKLREY_ 0 0 0 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.218994140625 3 436.21906 1305.63535 0.0041305 1.8018E-06 -0.045474 -1.9836E-05 -0.041343 -1.8035E-05 436.21931015399673 38.037 0.24346 37.765 37.638 37.882 -0.27133 26 11 3 0 0 0 0.39161 1 20000 20000 22.109 20.023 1 3209500 75983 10301 50685 51788 88592 88592 -0.005241192991434218 WPEEGKLREY 10 Unmodified _WPEEGKLREY_ 0 0 0 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.2184448242188 3 436.21906 1305.63535 0.92457 0.00040332 -0.80851 -0.00035269 0.11606 5.0627E-05 436.2185827581295 42.383 0.44582 37.698 37.423 37.869 -4.6846 74 29 4 0 0 0 0.30604 2 25487 25487;25616 27.129 18.685 1 47262000 75984 10301 50685 51788 88593;88594 88593 -0.005241192991434218 WPEEGKLREY 10 Unmodified _WPEEGKLREY_ 0 0 0 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 ENSG00000204569|ENST00000376511|PPP1R10 MSMS AL20221201_MKP_PDAC_01 4 653.82568359375 2 653.824952 1305.63535 NaN NaN NaN NaN NaN NaN NaN 42.335 1 37.651 37.151 38.151 -4.6846 0 0 0 0.016073 1 25562 25562 74.2 36.024 1 75985 10301 50685 51788 88595 88595 -0.005241192991434218 WPEEKPPSY 9 Unmodified _WPEEKPPSY_ 0 0 0 ENSG00000145103|ENST00000344209|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;nc|ENSG00000145103|Q86SU0-5|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 ENSG00000145103|ENST00000344209|ILDR1 MSMS AL20221201_MKP_PDAC_01 4 566.7698364257812 2 566.769114 1131.52368 NaN NaN NaN NaN NaN NaN NaN 45.455 1 40.5 40 41 -4.9549 0 0 0 0.18351 1 27910 27910 32.786 6.5175 1 75986 5667 50686 51789 88596 88596 -0.03682553656290111 WPEGFVSHEEG 11 Unmodified _WPEGFVSHEEG_ 0 0 0 REV__ENSG00000099399|ENST00000378988|MAGEB2 REV__ENSG00000099399|ENST00000378988|MAGEB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.2792358398438 2 637.277835 1272.54112 1.1887 0.00075753 0.26389 0.00016817 1.4526 0.0009257 637.2783277167686 63.933 0.38093 57.757 57.595 57.976 -6.1757 30 20 2 0 0 0 0.37677 1 41391 41391 22.736 3.4793 1 17159000 + 75987 17979 50687 51790 88597 88597 -0.08425258121269508 WPEGHFATITL 11 Unmodified _WPEGHFATITL_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3244018554688 2 636.324588 1270.63462 0.21725 0.00013824 -0.39909 -0.00025395 -0.18184 -0.00011571 636.8261096226505 75.074 0.63736 75.12 74.793 75.431 0.045967 70 30 3 0 0 0 0.096911 2 41326 41326;41426 45.7 21.679 1 15021000 75988 1846 50688 51791 88598;88599 88598 0.010130860517847395 WPEGHFATITL 11 Unmodified _WPEGHFATITL_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.3248901367188 2 636.324588 1270.63462 0.79858 0.00050816 -0.08839 -5.6245E-05 0.71019 0.00045191 636.3241760865031 91.619 0.84935 85.443 84.939 85.788 -6.1757 125 47 3 0 0 0 0.014658 5 60401 60285;60401;60526;60649;60778 78.728 31.134 1 35295000 75989 1846 50688 51791 88600;88601;88602;88603;88604 88601 0.010130860517847395 WPEGHFATITL 11 Unmodified _WPEGHFATITL_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 636.324588 1270.63462 0.36212 0.00023043 0.31293 0.00019913 0.67505 0.00042955 636.3247091669339 75.662 0.40645 75.185 74.92 75.327 -0.47713 0.032855 0.00066159 NaN 45.7 32 21 3 NaN NaN NaN NaN 0 NaN NaN 0 1231100 75990 1846 50688 51791 0.010130860517847395 WPEGHFATITL 11 Unmodified _WPEGHFATITL_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 636.324588 1270.63462 0.21725 0.00013824 -0.39909 -0.00025395 -0.18184 -0.00011571 636.8261096226505 75.074 0.63736 75.12 74.793 75.431 0.045967 -0.032855 -0.00024456 NaN 45.7 70 30 3 NaN NaN NaN NaN 0 NaN NaN 0 15021000 75991 1846 50688 51791 0.010130860517847395 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.5703125 3 454.570204 1360.68878 0.31752 0.00014433 0.053057 2.4118E-05 0.37058 0.00016845 454.5701501378303 55.442 0.60912 54.964 54.629 55.238 -0.47798 75 28 3 0 0 0 0.42951 2 29991 29991;30111 19.987 15.551 1 4396800 75992 4951 50689 51792 88605;88606 88605 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.5703125 3 454.570204 1360.68878 0.55427 0.00025195 -0.10027 -4.5579E-05 0.454 0.00020637 454.5701450353118 55.124 0.7741 55.055 54.661 55.435 -0.068741 130 38 4 0 0 0 0.10976 4 29808 29808;29915;30015;30121 41.347 32.595 1 72839000 75993 4951 50689 51792 88607;88608;88609;88610 88607 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.3507080078125 2 681.351668 1360.68878 0.4328 0.00029489 -0.019292 -1.3144E-05 0.41351 0.00028174 681.3517320794283 55.129 0.47458 55.06 54.764 55.238 -0.068737 42 23 3 0 0 0 0.3535 2 29896 29896;29998 23.79 8.5413 1 5451700 75994 4951 50689 51792 88611;88612 88611 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 454.5701293945312 3 454.570204 1360.68878 1.0559 0.00047999 0.13477 6.1263E-05 1.1907 0.00054126 454.57030273472657 74.231 0.60758 68.056 67.788 68.396 -6.1757 40 31 2 0 0 0 0.17474 1 48551 48551 33.821 20.303 1 15328000 75995 4951 50689 51792 88613 88613 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5705871582031 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 72.259 1 66.084 65.584 66.584 -6.1757 0 0 0 0.19028 1 47282 47282 39.923 20.297 1 75996 4951 50689 51792 88614 88614 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5707092285156 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 72.515 1 66.339 65.839 66.839 -6.1757 0 0 0 0.12607 1 47444 47444 46.475 31.518 1 75997 4951 50689 51792 88615 88615 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5708923339844 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 72.7 1 66.524 66.024 67.024 -6.1757 0 0 0 0.082954 1 47560 47560 53.47 36.421 1 75998 4951 50689 51792 88616 88616 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5711669921875 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 72.905 1 66.73 66.23 67.23 -6.1757 0 0 0 0.082954 1 47688 47688 53.47 28.588 1 75999 4951 50689 51792 88617 88617 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5705871582031 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 73.09 1 66.914 66.414 67.414 -6.1757 0 0 0 0.06765 1 47805 47805 57.204 37.578 1 76000 4951 50689 51792 88618 88618 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5705871582031 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 73.271 1 67.095 66.595 67.595 -6.1757 0 0 0 0.061484 1 47923 47923 59.013 29.576 1 76001 4951 50689 51792 88619 88619 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5713500976562 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 73.47 1 67.294 66.794 67.794 -6.1757 0 0 0 0.082954 1 48048 48048 53.47 28.588 1 76002 4951 50689 51792 88620 88620 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5708923339844 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 73.69 1 67.514 67.014 68.014 -6.1757 0 0 0 0.12607 1 48184 48184 46.475 31.518 1 76003 4951 50689 51792 88621 88621 0.022866782033588606 WPEGSDIRRVF 11 Unmodified _WPEGSDIRRVF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MSMS AL20221201_MKP_PDAC_01 4 454.5709533691406 3 454.570204 1360.68878 NaN NaN NaN NaN NaN NaN NaN 74.597 1 68.421 67.921 68.921 -6.1757 0 0 0 0.48959 1 48770 48770 24.957 9.9999 1 76004 4951 50689 51792 88622 88622 0.022866782033588606 WPEPGRQQY 9 Unmodified _WPEPGRQQY_ 0 0 0 nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729|PTPRU;ENST00000465525.6_1_1:29647190-29652170:+|nuORF nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU MULTI-SECPEP AL20221201_MKP_PDAC_01 4 580.7518310546875 2 580.777805 1159.54106 0.31602 0.00018353 1.302 0.00075616 1.618 0.0009397 580.7795684510392 41.272 0.20676 36.664 36.566 36.772 -4.6079 20 12 2 0 0 0 0.19496 1 24803 24803 13.906 5.1606 1 6504500 76005 16036 50690 51793 88623 88623 -0.03233213330599938 WPEPVEQF 8 Unmodified _WPEPVEQF_ 0 0 0 nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF nc|ENSG00000179583|P33076|CIITA nc|ENSG00000179583|P33076|CIITA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2455444335938 2 516.245275 1030.476 0.27258 0.00014072 0.55813 0.00028813 0.83071 0.00042885 516.245447750006 82.107 0.27537 82.107 81.969 82.245 0 19 13 2 0 0 0 0.80624 1 45569 45569 2.8892 0.31174 1 295430 76006 8844 50691 51794 88624 88624 -0.03802207856483619 WPEQNIKDSF 10 Unmodified _WPEQNIKDSF_ 0 0 0 ENSG00000197372|ENST00000359788|ZNF675;nc|ENSG00000196247|Q9UII5|ZNF107;ENSG00000196247|ENST00000620827|ZNF107 ENSG00000197372|ENST00000359788|ZNF675;nc|ENSG00000196247|Q9UII5|ZNF107 nc|ENSG00000196247|Q9UII5|ZNF107 MSMS AL20221201_MKP_PDAC_01 4 421.8733215332031 3 421.87166 1262.59315 NaN NaN NaN NaN NaN NaN NaN 54.858 1 48.993 48.493 49.493 -5.8653 0 0 0 0.83398 1 34848 34848 6.1918 1.1443 1 76007 9945;9788 50692 51795 88625 88625 -0.02764094707526965 WPFARRVTF 9 Unmodified _WPFARRVTF_ 0 0 0 ENSG00000076604|ENST00000262395|TRAF4 ENSG00000076604|ENST00000262395|TRAF4 ENSG00000076604|ENST00000262395|TRAF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.8866882324219 3 393.885576 1178.6349 1.3366 0.00052647 -0.95986 -0.00037807 0.37675 0.0001484 393.88520890659584 88.954 0.2987 82.779 82.636 82.935 -6.1757 26 16 2 0 0 0 0.35911 1 58766 58766 14.405 6.7964 1 13517000 76008 1189 50693 51796 88626 88626 0.05272550562312972 WPFFGAKLFL 10 Unmodified _WPFFGAKLFL_ 0 0 0 ENSG00000152527|ENST00000282406|PLEKHH2;nc|ENSG00000152527|Q8IVE3-2|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 ENSG00000152527|ENST00000282406|PLEKHH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.344970703125 2 613.342052 1224.66955 0.31035 0.00019035 0.011299 6.9301E-06 0.32165 0.00019728 613.3436923791347 97.292 0.70412 97.292 96.95 97.654 0 177 33 6 0 0 0 0.72607 1 53922 53922 0 0 1 27593000 76009 6195 50694 51797 88627 88627 0.06620373650412148 WPFLRLIRWRL 11 Unmodified _WPFLRLIRWRL_ 0 0 0 REV__ENSG00000128519|ENST00000249284|TAS2R16 REV__ENSG00000128519|ENST00000249284|TAS2R16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 778.4721069335938 2 778.472255 1554.92996 NaN NaN NaN NaN NaN NaN NaN 86.371 1 85.868 85.368 86.368 -0.50318 0 0 0 0.9435 1 47259 47259 0 0 1 + 76010 19613 50695 51798 88628 88628 0.17468958701101656 WPFLYCWHL 9 Unmodified _WPFLYCWHL_ 0 0 0 ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF ENST00000358595.9_2_1:150782642-150782786:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.2040100097656 3 422.203917 1263.58992 -0.78025 -0.00032942 1.1222 0.00047378 0.3419 0.00014435 422.20449299206393 28.084 0.15213 28.084 28.057 28.209 0 12 8 2 0 0 0 0.58466 1 14516 14516 1.1933 0 1 1151700 76011 12129 50696 51799 88629 88629 -0.03133016295237212 WPFNQKVTL 9 Unmodified _WPFNQKVTL_ 0 0 0 nc|ENSG00000127191|Q12933-4|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2 nc|ENSG00000127191|Q12933-4|TRAF2 nc|ENSG00000127191|Q12933-4|TRAF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.811279296875 2 566.811116 1131.60768 0.55777 0.00031615 0.51214 0.00029029 1.0699 0.00060644 566.8113299954351 67.808 0.44778 67.826 67.609 68.057 0.018028 35 21 2 0 0 0 0.044042 2 37224 37224;37330 60.074 38.537 1 7960900 76012 3991 50697 51800 88630;88631 88630 0.04714022231291892 WPFQGTIRL 9 Unmodified _WPFQGTIRL_ 0 0 0 ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 ENSG00000175104|ENST00000526995|TRAF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.310546875 2 559.311284 1116.60801 1.5541 0.00086925 -0.25465 -0.00014243 1.2995 0.00072682 559.3110059938064 95.818 0.25076 89.642 89.463 89.714 -6.1757 27 15 2 0 0 0 0.032796 1 63431 63431 53.833 13.875 1 14712000 76013 8484 50698 51801 88632 88632 0.05437441951130495 WPFRANSFL 9 Unmodified _WPFRANSFL_ 0 0 0 REV__ENSG00000187701|ENST00000460972|OR2T27 REV__ENSG00000187701|ENST00000460972|OR2T27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.2996826171875 2 569.295633 1136.57671 1.1413 0.00064973 -1.0356 -0.00058958 0.10566 6.0153E-05 569.2964008507902 102.33 0.40877 96.159 95.918 96.326 -6.1757 43 30 3 0 0 0 0.23158 1 68646 68646 20.454 9.6297 1 6003900 + 76014 23651 50699 51802 88633 88633 0.01388868917047148 WPGGPRSRPRG 11 Unmodified _WPGGPRSRPRG_ 0 0 0 ENSG00000105327|ENST00000439096|BBC3 ENSG00000105327|ENST00000439096|BBC3 ENSG00000105327|ENST00000439096|BBC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2232666015625 3 408.22325 1221.64792 NaN NaN NaN NaN NaN NaN NaN 91.284 1 90.79 90.29 91.29 -0.49457 0 0 0 0.9435 1 49898 49898 0 0 1 76015 2304 50700 51803 88634 88634 0.04596381674400618 WPGQAPSPWA 10 Unmodified _WPGQAPSPWA_ 0 0 0 REV__ENST00000488968.1_1_8:21946719-21952121:+|nuORF REV__ENST00000488968.1_1_8:21946719-21952121:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.2758178710938 2 548.764166 1095.51378 NaN NaN NaN NaN NaN NaN NaN 53.691 1 53.628 53.128 54.128 -0.063423 0 0 0 0.57227 1 29134 29134 22.736 3.4793 1 + 76016 27852 50701 51804 88635 88635 -0.030156968710116416 WPGRALAVA 9 Unmodified _WPGRALAVA_ 0 0 0 ENST00000397086.6_2_16:2303455-2303809:-|nuORF ENST00000397086.6_2_16:2303455-2303809:-|nuORF ENST00000397086.6_2_16:2303455-2303809:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 942.538330078125 1 940.536312 939.529036 0.11992 0.00011278 -0.51844 -0.00048761 -0.39852 -0.00037483 940.5357437136795 68.261 0.49998 68.261 68.043 68.543 0 57 23 3 0 0 0 0.62242 1 38161 38161 0 0 1 3275000 76017 12815 50702 51805 88636 88636 0.05685214716822884 WPGWEWGA 8 Unmodified _WPGWEWGA_ 0 0 0 REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7191772460938 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 12.859 1 12.859 12.359 13.359 0 0 0 0 0.97444 1 6087 6087 0 0 1 + 76018 27565 50703 51806 88637 88637 -0.07031326479580002 WPGWEWGA 8 Unmodified _WPGWEWGA_ 0 0 0 REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7191467285156 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 2.1762 1 2.1592 1.6592 2.6592 -0.017019 0 0 0 0.97444 1 1112 1112 0 0 1 + 76019 27565 50703 51806 88638 88638 -0.07031326479580002 WPGWEWGA 8 Unmodified _WPGWEWGA_ 0 0 0 REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF REV__ENST00000474489.5_1_2:220381987-220402187:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7190856933594 2 494.719227 987.423902 NaN NaN NaN NaN NaN NaN NaN 12.945 1 12.955 12.455 13.455 0.0096512 0 0 0 0.97444 1 6381 6381 0 0 1 + 76020 27565 50703 51806 88639 88639 -0.07031326479580002 WPHEDAAQF 9 Unmodified _WPHEDAAQF_ 0 0 0 ENSG00000135250|ENST00000393651|SRPK2;nc|ENSG00000135250|P78362|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 ENSG00000135250|ENST00000393651|SRPK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7431640625 2 550.743431 1099.47231 0.88976 0.00049003 2.4858 0.001369 3.3756 0.0018591 550.7434076306191 49.745 0.35934 44.206 44.065 44.424 -5.5391 60 22 4 0 0 0 0.010877 2 31054 31054;31190 77.984 31.963 1 65024000 76021 4682 50704 51807 88640;88641 88640 -0.07344877630362134 WPHPRNVI 8 Unmodified _WPHPRNVI_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.7839965820312 2 509.782693 1017.55083 0.25231 0.00012862 1.0677 0.00054428 1.32 0.0006729 509.78392350889516 85.852 0.26561 85.35 85.229 85.495 -0.5015 14 10 2 0 0 0 0.80624 1 46987 46987 2.8892 0 1 193620 + 76022 19478 50705 51808 88642 88642 0.042760194654192674 WPHQPPPHL 9 Unmodified _WPHQPPPHL_ 0 0 0 REV__ENST00000572681.6_2_19:42796831-42797116:+|nuORF REV__ENST00000572681.6_2_19:42796831-42797116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.1943359375 3 370.194409 1107.5614 0.10375 3.8408E-05 -0.49418 -0.00018294 -0.39043 -0.00014453 370.1941806843026 22.065 0.24071 22.079 21.941 22.182 0.013796 17 9 2 0 0 0 0.58466 1 11344 11344 1.1933 0 1 612840 + 76023 28990 50706 51809 88643 88643 0.011920021198420727 WPIDDHFTY 9 Unmodified _WPIDDHFTY_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2662353515625 2 597.266739 1192.51892 0.19722 0.00011779 -0.41657 -0.00024881 -0.21936 -0.00013101 597.2662464779547 66.254 0.7753 65.771 65.478 66.254 -0.48323 72 39 2 0 0 0 0.0082475 3 36306 36069;36199;36306 92.822 73.565 1 6849600 76024 755 50707 51810 88644;88645;88646 88646 -0.06963437799049643 WPIDDHFTY 9 Unmodified _WPIDDHFTY_ 0 0 0 ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75 ENSG00000054219|ENST00000263636|LY75 ENSG00000054219|ENST00000263636|LY75 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2676391601562 2 597.266739 1192.51892 0.35051 0.00020935 0.36322 0.00021694 0.71373 0.00042629 597.2667608507614 73.507 0.99147 67.331 66.877 67.868 -6.1757 99 48 3 0 0 0 0.0082475 5 48348 47868;48002;48119;48231;48348 104.8 63.913 1 37845000 76025 755 50707 51810 88647;88648;88649;88650;88651 88651 -0.06963437799049643 WPIDGGTSL 9 Unmodified _WPIDGGTSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2380065917969 2 473.23745 944.460347 NaN NaN NaN NaN NaN NaN NaN 65.566 1 65.566 65.066 66.066 0 0 0 0 0.10545 1 36571 36571 42.095 11.87 1 76026 1104 50708 51811 88652 88652 -0.014104943734992048 WPIDGGTSL 9 Unmodified _WPIDGGTSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 945.4672241210938 1 945.467623 944.460347 -0.003533 -3.3404E-06 0.22102 0.00020897 0.21749 0.00020563 945.4670328471028 66.034 0.77725 65.551 65.125 65.902 -0.48323 62 37 2 0 0 0 0.008678 4 36075 35867;35980;36075;36245 88.904 24.667 1 7683500 76027 1104 50708 51811 88653;88654;88655;88656 88655 -0.014104943734992048 WPIDGGTSL 9 Unmodified _WPIDGGTSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 945.4681396484375 1 945.467623 944.460347 0.28293 0.0002675 -0.4534 -0.00042868 -0.17047 -0.00016117 945.4675172149643 72.866 0.90453 66.69 66.259 67.163 -6.1757 91 45 3 0 0 0 0.0018186 5 47551 47435;47551;47659;47773;47892 133.7 40.88 1 49356000 76028 1104 50708 51811 88657;88658;88659;88660;88661 88658 -0.014104943734992048 WPIDGGTSL 9 Unmodified _WPIDGGTSL_ 0 0 0 nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF nc|ENSG00000073350|Q6P1M3-2|LLGL2 nc|ENSG00000073350|Q6P1M3-2|LLGL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2381286621094 2 473.23745 944.460347 0.82236 0.00038917 -0.082945 -3.9253E-05 0.73942 0.00034992 473.23740699805035 72.909 0.94871 66.734 66.259 67.207 -6.1757 100 47 3 0 0 0 0.010877 3 47792 47559;47675;47792 77.984 17.595 1 51946000 76029 1104 50708 51811 88662;88663;88664 88664 -0.014104943734992048 WPKIERNEL 9 Unmodified _WPKIERNEL_ 0 0 0 ENSG00000234828|ENST00000636793|IQCM ENSG00000234828|ENST00000636793|IQCM ENSG00000234828|ENST00000636793|IQCM MSMS AL20221201_MKP_PDAC_01 4 592.8248291015625 2 592.824755 1183.63496 NaN NaN NaN NaN NaN NaN NaN 93.374 1 87.198 86.698 87.698 -6.1757 0 0 0 0.36554 1 61798 61798 21.747 2.4897 1 76030 10637 50709 51812 88665 88665 0.05048505771674172 WPKILKISY 9 Unmodified _WPKILKISY_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.2339782714844 3 383.233982 1146.68012 0.24831 9.5161E-05 -0.509 -0.00019506 -0.26069 -9.9904E-05 383.2338567073957 62.264 0.83069 62.231 61.551 62.382 -0.032787 83 42 4 0 0 0 0.20507 2 34001 33840;34001 21.799 21.799 1 13794000 76031 1487;1286 50710 51813 88666;88667 88667 0.11264356304855028 WPKILKISY 9 Unmodified _WPKILKISY_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.2340087890625 3 383.233982 1146.68012 1.093 0.00041887 -0.24924 -9.5517E-05 0.84375 0.00032335 383.2338818014248 92.666 0.85426 86.49 85.952 86.806 -6.1757 131 52 4 0 0 0 0.13231 4 61034 61034;61162;61290;61424 28.234 21.603 1 54673000 76032 1487;1286 50710 51813 88668;88669;88670;88671 88668 0.11264356304855028 WPKILKISY 9 Unmodified _WPKILKISY_ 0 0 0 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000088367|Q9H4G0-2|EPB41L1;nc|ENSG00000088367|Q9H4G0-3|EPB41L1;nc|ENSG00000088367|Q9H4G0-4|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1;nc|ENSG00000079819|O43491-2|EPB41L2 ENSG00000088367|ENST00000338074|EPB41L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.34716796875 2 574.347335 1146.68012 0.72962 0.00041905 -0.054127 -3.1088E-05 0.67549 0.00038797 574.3469635539691 92.705 0.55219 86.529 86.202 86.754 -6.1757 59 34 2 0 0 0 0.0019086 2 61335 61215;61335 133.05 110.32 1 25564000 76033 1487;1286 50710 51813 88672;88673 88673 0.11264356304855028 WPKLRVRRPH 10 Unmodified _WPKLRVRRPH_ 0 0 0 REV__ENSG00000117595|ENST00000367021|IRF6 REV__ENSG00000117595|ENST00000367021|IRF6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.9100952148438 2 672.909822 1343.80509 NaN NaN NaN NaN NaN NaN NaN 15.59 1 15.596 15.096 16.096 0.0057774 0 0 0 1.0061 1 7776 7776 0 0 1 + 76034 19116 50711 51814 88674 88674 0.14694086284589503 WPKRLLPIR 9 Unmodified _WPKRLLPIR_ 0 0 0 REV__nc|ENSG00000205238|Q495Y8-2|SPDYE2 REV__nc|ENSG00000205238|Q495Y8-2|SPDYE2 MSMS AL20221201_MKP_PDAC_01 4 590.2877807617188 2 589.879668 1177.74478 NaN NaN NaN NaN NaN NaN NaN 102.54 1 96.365 95.865 96.865 -6.1757 0 0 0 0.82396 1 68806 68806 4.756 0 1 + 76035 22743 50712 51815 88675 88675 0.16301975901501464 WPKYCCFL 8 Unmodified _WPKYCCFL_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.2451171875 2 530.243166 1058.47178 NaN NaN NaN NaN NaN NaN NaN 4.8219 1 4.8156 4.3156 5.3156 -0.0062971 0 0 0 0.97444 1 2434 2434 0.79363 0 1 76036 6354 50713 51816 88676 88676 -0.05511711875396941 WPLARGGS 8 Unmodified _WPLARGGS_ 0 0 0 ENST00000514782.5_1_4:40632009-40632096:-|nuORF ENST00000514782.5_1_4:40632009-40632096:-|nuORF ENST00000514782.5_1_4:40632009-40632096:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.2278442382812 2 422.22722 842.439886 0.10839 4.5765E-05 1.5099 0.00063753 1.6183 0.00068329 422.22781056030345 55.779 0.29007 55.301 55.132 55.422 -0.47798 37 13 4 0 0 0 0.80975 1 30191 30191 0.79363 0 1 9698500 76037 14659 50714 51817 88677 88677 0.01236379757335726 WPLEEVVLL 9 Unmodified _WPLEEVVLL_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.31689453125 2 549.3157 1096.61685 0.7361 0.00040435 2.94 0.001615 3.6761 0.0020193 549.3163904672838 101.58 0.13133 95.404 95.33 95.461 -6.1757 13 6 3 0 0 0 0.2143 1 68167 68167 21.747 5.5975 1 25059000 76038 16069 50715 51818 88678 88678 0.07240370796944262 WPLTIVHQKN 10 Unmodified _WPLTIVHQKN_ 0 0 0 REV__nc|ENSG00000169064|A8MT70-3|ZBBX REV__nc|ENSG00000169064|A8MT70-3|ZBBX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.347900390625 2 618.348397 1234.68224 NaN NaN NaN NaN NaN NaN NaN 15.41 1 15.416 14.916 15.916 0.0057774 0 0 0 1.0024 1 7679 7679 0.40072 0 1 + 76039 22369 50716 51819 88679 88679 0.07428785042657182 WPLTPHPWVY 10 Unmodified _WPLTPHPWVY_ 0 0 0 ENST00000522759.1_1_8:21986032-21988020:-|nuORF;nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR ENST00000522759.1_1_8:21986032-21988020:-|nuORF ENST00000522759.1_1_8:21986032-21988020:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 648.3316040039062 2 648.332216 1294.64988 NaN NaN NaN NaN NaN NaN NaN 96.014 1 89.838 89.338 90.338 -6.1757 0 0 0 0.01428 1 63611 63611 81.613 47.211 1 76040 7767 50717 51820 88680 88680 0.014339976396286147 WPLVAALL 8 Unmodified _WPLVAALL_ 0 0 0 nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47 nc|ENSG00000196776|Q08722-2|CD47 nc|ENSG00000196776|Q08722-2|CD47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 882.5458984375 1 882.544751 881.537475 0.27865 0.00024592 -0.62738 -0.00055369 -0.34873 -0.00030777 882.5442205487451 101.79 0.080032 95.61 95.582 95.662 -6.1757 9 6 2 0 0 0 0.42709 1 68319 68319 41.817 1.8599 1 21635000 76041 9868 50718 51821 88681 88681 0.09196768633444208 WPMKFVFG 8 Unmodified _WPMKFVFG_ 0 0 0 REV__nc|ENSG00000101224|P30305-3|CDC25B REV__nc|ENSG00000101224|P30305-3|CDC25B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7335815429688 2 506.259674 1010.50479 0.10521 5.3264E-05 0.53786 0.0002723 0.64307 0.00032556 506.25979168727366 86.322 0.44992 85.819 85.57 86.02 -0.50318 41 18 3 0 0 0 8.7369 1 47330 47330 0 0 1 1989100 + 76042 18149 50719 51822 88682 88682 -3.761761024634325E-05 WPNLFSCHI 9 Unmodified _WPNLFSCHI_ 0 0 0 REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|7|2|sense REV__HSMAR1_dup532|chr12:67421249-67421791:+|1.289924218758042|0.1388098642436239|3.22|177.0|7|2|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.2096252441406 3 372.848022 1115.52224 0.10237 3.8168E-05 2.5394 0.00094682 2.6418 0.00098499 372.84880557563656 39.579 0.1928 39.579 39.488 39.681 0 13 8 2 0 0 0 0.21367 1 21258 21258 1.0715 0.3738 1 2601500 + 76043 29388 50720 51823 88683 88683 -0.0309046622603546 WPNSDPPFSF 10 Unmodified _WPNSDPPFSF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.269287109375 2 597.266739 1192.51892 -0.11534 -6.8892E-05 1.205 0.00071972 1.0897 0.00065083 597.2672855719652 93.421 0.45953 87.245 87.125 87.585 -6.1757 51 30 2 0 0 0 0.1379 1 61858 61858 55.503 27.874 1 14837000 76044 4412 50721 51824 88684 88684 -0.0696343779907238 WPPAIPLK 8 Unmodified _WPPAIPLK_ 0 0 0 nc|ENSG00000164808|Q14159-3|SPIDR;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;ENSG00000164808|ENST00000297423|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR nc|ENSG00000164808|Q14159-3|SPIDR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.2820434570312 2 461.281463 920.548374 0.93869 0.000433 0.59907 0.00027634 1.5378 0.00070934 461.2816960821687 80.928 0.37421 80.988 80.79 81.165 0.059929 30 14 3 0 0 0 0.65867 1 44737 44737 20.871 0 1 4410400 76045 16347 50722 51825 88685 88685 0.08492171007753768 WPPLLLLLL 9 Unmodified _WPPLLLLLL_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MSMS AL20221201_MKP_PDAC_01 4 359.9082641601562 3 359.907206 1076.69979 NaN NaN NaN NaN NaN NaN NaN 8.1049 1 5.623 5.123 6.123 -2.482 0 0 0 0.8622 1 4091 4091 0 0 1 76046 4655 50723 51826 88686 88686 0.16450732315615824 WPPLLLLLL 9 Unmodified _WPPLLLLLL_ 0 0 0 ENSG00000134917|ENST00000257359|ADAMTS8;ENST00000498308.1_1_7:5111828-5112677:+|nuORF;ENST00000396904.2_2_7:5097383-5112677:+|nuORF ENSG00000134917|ENST00000257359|ADAMTS8 ENSG00000134917|ENST00000257359|ADAMTS8 MSMS AL20221201_MKP_PDAC_01 4 359.8643798828125 3 359.907206 1076.69979 NaN NaN NaN NaN NaN NaN NaN 12.331 1 9.8494 9.3494 10.349 -2.482 0 0 0 0.8622 1 6233 6233 0 0 1 76047 4655 50723 51826 88687 88687 0.16450732315615824 WPPPEIRRE 9 Unmodified _WPPPEIRRE_ 0 0 0 REV__ENST00000581012.6_1_17:30190486-30190531:-|nuORF REV__ENST00000581012.6_1_17:30190486-30190531:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3176879882812 2 590.317097 1178.61964 NaN NaN NaN NaN NaN NaN NaN 72.636 1 72.678 72.178 73.178 0.041725 0 0 0 0.84369 1 40001 40001 2.3027 0 1 + 76048 29060 50724 51827 88688 88688 0.0374763897448247 WPPSSRAILI 10 Unmodified _WPPSSRAILI_ 0 0 0 REV__ENST00000473202.1_1_2:224840586-224842399:-|nuORF REV__ENST00000473202.1_1_2:224840586-224842399:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.5579528808594 3 380.557236 1138.64988 NaN NaN NaN NaN NaN NaN NaN 63.378 1 62.892 62.392 63.392 -0.48617 0 0 0 0.99897 1 34563 34563 0.77653 0 1 + 76049 20113 50725 51828 88689 88689 0.08609997639655376 WPPVPVGQE 9 Unmodified _WPPVPVGQE_ 0 0 0 REV__nc|ENSG00000140691|Q96C12-4|ARMC5 REV__nc|ENSG00000140691|Q96C12-4|ARMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2638854980469 2 504.761092 1007.50763 0.96015 0.00048465 0.18037 9.1042E-05 1.1405 0.00057569 504.7611641946399 60.24 0.57499 54.126 53.87 54.445 -6.1147 72 29 3 0 0 0 0.25681 1 38641 38641 19.257 19.257 1 68786000 + 76050 29664 50726 51829 88690 88690 0.004177848974791232 WPQDEYIVEY 10 Unmodified _WPQDEYIVEY_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 671.3048095703125 2 671.303518 1340.59248 -0.39804 -0.00026721 1.7399 0.001168 1.3419 0.00090082 671.3047838729185 71.045 0.31866 71.045 70.895 71.214 0 26 13 3 0 0 0 0.69917 1 39576 39576 2.9952 0 1 769620 76051 9014 50727 51830 88691 88691 -0.06418934147245636 WPQDEYIVEY 10 Unmodified _WPQDEYIVEY_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.3033447265625 2 671.303518 1340.59248 0.51489 0.00034565 0.96839 0.00065009 1.4833 0.00099573 671.3037965503478 71.647 0.414 71.171 70.927 71.341 -0.47609 25 16 2 0 0 0 0.68209 1 39215 39215 4.897 1.9018 1 858140 76052 9014 50727 51830 88692 88692 -0.06418934147245636 WPQDEYIVEY 10 Unmodified _WPQDEYIVEY_ 0 0 0 ENSG00000182087|ENST00000356663|TMEM259;nc|ENSG00000182087|Q4ZIN3-2|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 ENSG00000182087|ENST00000356663|TMEM259 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.3080444335938 2 671.303518 1340.59248 1.2016 0.00080666 0.51291 0.00034432 1.7145 0.001151 671.304030089018 79.473 0.40518 73.298 73.095 73.5 -6.1757 41 23 2 0 0 0 0.018732 2 52036 52036;52170 76.825 34.986 1 18573000 76053 9014 50727 51830 88693;88694 88693 -0.06418934147245636 WPQEILAKY 9 Unmodified _WPQEILAKY_ 0 0 0 ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 ENSG00000100359|ENST00000248929|SGSM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.81201171875 2 574.310949 1146.60735 -0.014255 -8.1868E-06 -0.446 -0.00025614 -0.46026 -0.00026433 574.8121483675819 61.4 0.23245 60.911 60.777 61.009 -0.48932 24 10 3 0 0 0 0.41742 1 33448 33448 11.64 4.9171 1 1385700 76054 1805 50728 51831 88695 88695 0.03990602511430552 WPQHCRTL 8 Unmodified _WPQHCRTL_ 0 0 0 REV__ENST00000262518.8_1_16:30734054-30734298:+|nuORF REV__ENST00000262518.8_1_16:30734054-30734298:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7630615234375 2 520.758361 1039.50217 -0.031457 -1.6381E-05 -1.7168 -0.00089402 -1.7482 -0.0009104 520.7582239026169 29.212 0.42781 29.212 28.963 29.391 0 64 20 5 0 0 0 0.57045 1 15065 15065 28.487 0.85804 1 26191000 + 76055 25023 50729 51832 88696 88696 -0.01600217165992035 WPQIHFEKEE 10 Unmodified _WPQIHFEKEE_ 0 0 0 nc|ENSG00000168032|O75355-2|ENTPD3 nc|ENSG00000168032|O75355-2|ENTPD3 nc|ENSG00000168032|O75355-2|ENTPD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.2182006835938 3 448.21906 1341.63535 -0.62708 -0.00028107 -0.75198 -0.00033705 -1.3791 -0.00061812 448.2187924544965 16.344 0.10513 16.345 16.285 16.39 0.0010548 50 31 2 0 0 0 0.72247 1 8051 8051 0.13989 0.04505 1 752620 76056 16365 50730 51833 88697 88697 -0.021801192991688367 WPRAEDVDL 9 Unmodified _WPRAEDVDL_ 0 0 0 nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1 nc|ENSG00000004399|Q9Y4D7-2|PLXND1 nc|ENSG00000004399|Q9Y4D7-2|PLXND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5180053710938 3 367.517218 1099.52982 0.027794 1.0215E-05 -0.13193 -4.8485E-05 -0.10413 -3.827E-05 367.51716771058017 37.457 0.25246 37.457 37.316 37.569 0 33 13 3 0 0 0 0.41742 1 19897 19897 7.609 0 1 11810000 76057 273 50731 51834 88698 88698 -0.015960354247681607 WPRHKFKCC 9 Unmodified _WPRHKFKCC_ 0 0 0 REV__nc|ENSG00000070729|Q14028-2|CNGB1 REV__nc|ENSG00000070729|Q14028-2|CNGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7969970703125 2 602.796963 1203.57937 NaN NaN NaN NaN NaN NaN NaN 17.93 1 17.944 17.444 18.444 0.013865 0 0 0 0.8622 1 8952 8952 0 0 1 + 76058 17477 50732 51835 88699 88699 -0.014273222212977998 WPRMRPAPSM 10 Unmodified _WPRMRPAPSM_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.20751953125 3 410.207444 1227.6005 0.19489 7.9945E-05 -0.50155 -0.00020574 -0.30667 -0.0001258 410.20732326131036 24.933 0.44308 24.931 24.688 25.131 -0.0016766 29 18 2 0 0 0 0.56348 1 12783 12783 11.518 4.0408 1 12050000 76059 11266 50733 51836 88700 88700 -0.004193569124709029 WPRMRPAPSM 10 Unmodified _WPRMRPAPSM_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.2059326171875 3 410.207444 1227.6005 NaN NaN NaN NaN NaN NaN NaN 17.662 1 17.676 17.176 18.176 0.013865 0 0 0 0.99248 1 8800 8800 0.62683 0 1 76060 11266 50733 51836 88701 88701 -0.004193569124709029 WPRMRPAPSM 10 Unmodified _WPRMRPAPSM_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 410.5407409667969 3 410.207444 1227.6005 NaN NaN NaN NaN NaN NaN NaN 27.281 1 24.244 23.744 24.744 -3.0365 0 0 0 0.49971 1 15104 15104 17.863 9.7076 1 76061 11266 50733 51836 88702 88702 -0.004193569124709029 WPRMRPAPSM 10 Unmodified _WPRMRPAPSM_ 0 0 0 ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF ENST00000262518.8_1_16:30710550-30715400:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 410.207444 1227.6005 -0.46697 -0.00019155 0.041177 1.6891E-05 -0.42579 -0.00017466 410.20746495164786 24.674 0.1783 24.674 24.624 24.802 0 -0.12868 0.00039526 NaN 11.518 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 971260 76062 11266 50733 51836 -0.004193569124709029 WPRRPTGEVY 10 Unmodified _WPRRPTGEVY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.8882446289062 3 420.887645 1259.64111 -0.23363 -9.8332E-05 0.2666 0.00011221 0.032968 1.3876E-05 420.88773906922 32.089 0.35388 32.119 31.925 32.279 0.029743 57 15 5 0 0 0 0.34249 2 16780 16780;16874 21.799 14.322 1 75998000 + 76063 168 50734 51837 88703;88704 88703 0.021670240031880894 WPRRPTGEVY 10 Unmodified _WPRRPTGEVY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.826416015625 2 630.827829 1259.64111 -0.13353 -8.4236E-05 0.0097457 6.1478E-06 -0.12379 -7.8088E-05 630.8278265921026 32.09 0.24915 32.119 31.988 32.237 0.029743 29 10 4 0 0 0 0.32072 1 16806 16806 26.268 11.863 1 6730100 + 76064 168 50734 51837 88705 88705 0.021670240031880894 WPRRPTGEVY 10 Unmodified _WPRRPTGEVY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.8277587890625 2 630.827829 1259.64111 0.31067 0.00019598 -0.96969 -0.00061171 -0.65902 -0.00041573 631.3281868250845 36.314 0.39843 32.121 31.93 32.328 -4.1928 52 23 3 0 0 0 0.32072 1 21145 21145 26.268 15.444 1 63316000 + 76065 168 50734 51837 88706 88706 0.021670240031880894 WPRRPTGEVY 10 Unmodified _WPRRPTGEVY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8881225585938 3 420.887645 1259.64111 0.7914 0.00033309 -0.065759 -2.7677E-05 0.72564 0.00030541 420.8876409105357 36.325 0.48756 32.133 31.87 32.358 -4.1928 79 29 3 0 0 0 0.57893 1 21255 21255 10.899 3.7972 1 188980000 + 76066 168 50734 51837 88707 88707 0.021670240031880894 WPRRPTGEVY 10 Unmodified _WPRRPTGEVY_ 0 0 0 CON__P12763 CON__P12763 CON__P12763 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 420.887645 1259.64111 -0.068751 -2.8936E-05 0.76112 0.00032035 0.69237 0.00029141 420.8879717450593 32.2 0.25851 32.07 31.917 32.176 -0.12915 -0.036945 0.00059372 NaN 21.799 32 9 4 NaN NaN NaN NaN 0 NaN NaN 0 12159000 + 76067 168 50734 51837 0.021670240031880894 WPRVRGVAM 9 Unmodified _WPRVRGVAM_ 0 0 0 ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF;ENST00000435269.1_1_3:174095525-174095792:+|nuORF ENSG00000161016|ENST00000528957|RPL8 ENSG00000161016|ENST00000528957|RPL8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 357.8678894042969 3 357.867528 1070.58075 1.4978 0.000536 -0.53515 -0.00019151 0.9626 0.00034448 357.8674783851203 48.151 0.62034 42.917 42.728 43.348 -5.2339 89 37 3 0 0 0 0.06187 3 30036 29908;30036;30173 31.268 19.028 1 19490000 76068 6779 50735 51838 88708;88709;88710 88709 0.04828635139119797 WPRVVVGLLP 10 Unmodified _WPRVVVGLLP_ 0 0 0 REV__ENST00000472718.5_1_3:47844552-47844693:+|nuORF REV__ENST00000472718.5_1_3:47844552-47844693:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.7357482910156 3 379.237726 1134.69135 -0.027003 -1.0241E-05 0.76463 0.00028998 0.73763 0.00027974 379.23761744982943 65.036 0.34551 65.036 64.901 65.247 0 18 15 2 0 0 0 0.24012 1 36328 36328 0 0 1 779970 + 76069 27524 50736 51839 88711 88711 0.12939178399005868 WPSDKGILVF 10 Unmodified _WPSDKGILVF_ 0 0 0 nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN;nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-1|AFDN nc|ENSG00000130396|P55196-3|AFDN nc|ENSG00000130396|P55196-3|AFDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.31982421875 2 581.318774 1160.623 1.4574 0.0008472 -0.3497 -0.00020329 1.1077 0.00064391 581.8201367610459 81.191 0.58031 81.251 80.79 81.371 0.059937 48 22 3 0 0 0 0.22922 2 44834 44726;44834 36.506 19.393 1 4931900 76070 4210 50737 51840 88712;88713 88713 0.0491088902847423 WPSGTECIAKY 11 Carbamidomethyl (C) _WPSGTEC(Carbamidomethyl (C))IAKY_ WPSGTEC(1)IAKY WPSGTEC(94)IAKY 0 1 0 ENST00000563894.1_1_15:75090907-75091078:+|nuORF;ENSG00000103653|ENST00000220003|CSK ENST00000563894.1_1_15:75090907-75091078:+|nuORF ENST00000563894.1_1_15:75090907-75091078:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 656.3063354492188 2 656.305538 1310.59652 0.66666 0.00043753 -0.20098 -0.00013191 0.46567 0.00030562 656.30552672201 53.427 0.32227 47.622 47.436 47.759 -5.8042 32 20 2 0 0 0 2.0147E-05 1 33741 33741 93.938 66.309 1 29001000 76071 15372 50738 51841 88714 88714 996 -0.04635167925175665 WPSKEALKL 9 Unmodified _WPSKEALKL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.8778686523438 3 357.878087 1070.61243 0.80089 0.00028662 -2.3866 -0.0008541 -1.5857 -0.00056748 357.87737942802886 46.318 0.31231 46.285 46.139 46.452 -0.033417 22 14 2 0 0 0 0.21585 1 24979 24979 5.0475 2.9615 1 1806300 76072 3760 50739 51842 88715 88715 0.07994906374028687 WPSLEYKIWLK 11 Unmodified _WPSLEYKIWLK_ 0 0 0 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 ENSG00000162753|ENST00000367714|SLC9C2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.60986328125 3 488.274617 1461.80202 1.2401 0.0006055 0.23295 0.00011374 1.473 0.00071924 488.2745053629347 66.471 0.24057 66.481 66.321 66.561 0.0095596 29 11 4 0 0 0 0.71503 1 36473 36473 2.8433 1.5136 1 4279300 76073 6907 50740 51843 88716 88716 0.08959353596560504 WPSMWYMHC 9 Unmodified _WPSMWYMHC_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5;nc|ENSG00000099139|Q92824-2|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.7415161132812 2 620.740465 1239.46638 0.46044 0.00028581 0.31909 0.00019807 0.77954 0.00048389 621.2419323452054 89.86 0.37048 89.358 89.196 89.567 -0.50171 38 19 3 0 0 0 0.62242 1 49229 49229 0 0 1 1209900 76074 1684 50741 51844 88717 88717 -0.1437775872950624 WPSRRRKA 8 Unmodified _WPSRRRKA_ 0 0 0 ENST00000367511.3_1_1:184787869-184792315:-|nuORF ENST00000367511.3_1_1:184787869-184792315:-|nuORF ENST00000367511.3_1_1:184787869-184792315:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8788146972656 3 352.877303 1055.61008 NaN NaN NaN NaN NaN NaN NaN 42.529 1 42.52 42.02 43.02 -0.0088196 0 0 0 0.97444 1 22771 22771 1.6526 0 1 76075 12238 50742 51845 88718 88718 0.08449915479604897 WPSVTSQEWVF 11 Unmodified _WPSVTSQEWVF_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.3294677734375 2 683.327328 1364.6401 1.6663 0.0011386 -2.4997 -0.0017081 -0.83347 -0.00056953 683.32653689623 100.16 0.1343 93.988 93.924 94.058 -6.1757 16 7 3 0 0 0 0.00013798 1 66924 66924 92.653 74.518 1 25302000 76076 2778 50743 51846 88719 88719 -0.027632351563852353 WPTAEWRAP 9 Unmodified _WPTAEWRAP_ 0 0 0 REV__ENST00000546040.1_1_9:18657630-18684799:+|nuORF REV__ENST00000546040.1_1_9:18657630-18684799:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.276611328125 2 557.277441 1112.54033 NaN NaN NaN NaN NaN NaN NaN 92.909 1 92.451 91.951 92.951 -0.4574 0 0 0 0.82015 1 50777 50777 5.2307 0 1 + 76077 28655 50744 51847 88720 88720 -0.01144007979678463 WPTSSADLSFF 11 Unmodified _WPTSSADLSFF_ 0 0 0 ENST00000595476.1_1_19:39869154-39871842:+|nuORF ENST00000595476.1_1_19:39869154-39871842:+|nuORF ENST00000595476.1_1_19:39869154-39871842:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.795166015625 2 629.292953 1256.57135 0.16181 0.00010182 0.54185 0.00034098 0.70366 0.00044281 629.293260287504 95.443 0.48326 95.075 94.735 95.218 -0.36815 53 22 3 0 0 0 0.71341 1 52014 52014 2.9952 0.69251 1 1433000 76078 15757 50745 51848 88721 88721 -0.04666899456105966 WPVGGDSRFVF 11 Unmodified _WPVGGDSRFVF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.8173217773438 2 633.81693 1265.61931 0.11801 7.4795E-05 0.16978 0.00010761 0.28778 0.0001824 633.8170607364831 76.949 1.2509 76.999 76.378 77.629 0.05011 198 52 5 0 0 0 0.15597 6 42389 42191;42292;42389;42490;42598;42697 51.415 39.775 1 62461000 76079 5370 50746 51849 88722;88723;88724;88725;88726;88727 88724 -0.0028778074540696252 WPVGGDSRFVF 11 Unmodified _WPVGGDSRFVF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.81689453125 2 633.81693 1265.61931 0.71685 0.00045435 -0.49689 -0.00031494 0.21996 0.00013941 633.8167355749667 92.44 1.8742 86.265 85.042 86.916 -6.1757 314 111 4 0 0 0 0.0055846 9 60728 60488;60610;60728;60858;60980;61108;61233;61353;61493 100.09 73.823 1 276050000 76080 5370 50746 51849 88728;88729;88730;88731;88732;88733;88734;88735;88736 88730 -0.0028778074540696252 WPVGGDSRFVF 11 Unmodified _WPVGGDSRFVF_ 0 0 0 nc|ENSG00000141738|Q14451-4|GRB7;ENSG00000141738|ENST00000309156|GRB7;nc|ENSG00000141738|Q14451-3|GRB7;nc|ENSG00000141738|Q14451-2|GRB7;ENST00000461756.1_1_17:37899195-37899563:+|nuORF nc|ENSG00000141738|Q14451-4|GRB7 nc|ENSG00000141738|Q14451-4|GRB7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 633.81693 1265.61931 0.13948 8.8405E-05 0.2509 0.00015903 0.39038 0.00024743 633.8170735420778 87.139 0.41307 86.635 86.42 86.833 -0.50423 0.18517 0.00085406 NaN 100.09 20 16 2 NaN NaN NaN NaN 0 NaN NaN 0 341420 76081 5370 50746 51849 -0.0028778074540696252 WPVVLLLLLL 10 Unmodified _WPVVLLLLLL_ 0 0 0 REV__ENSG00000142538|ENST00000270631|PTH2 REV__ENSG00000142538|ENST00000270631|PTH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1178.79638671875 1 1178.79113 1177.78385 1.4882 0.0017543 0.44404 0.00052343 1.9323 0.0022778 1178.793505339633 47.014 0.23863 46.98 46.814 47.052 -0.033417 12 11 2 0 0 0 0.72607 1 25279 25279 0 0 1 4290300 + 76082 20578 50747 51850 88737 88737 0.2020726341252157 WPVVVLGM 8 Unmodified _WPVVVLGM_ 0 0 0 ENSG00000154309|ENST00000675850|DISP1 ENSG00000154309|ENST00000675850|DISP1 ENSG00000154309|ENST00000675850|DISP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.7546081542969 2 450.754224 899.493896 0.60629 0.00027329 0.27509 0.000124 0.88139 0.00039729 450.75427840016187 81.901 0.39679 81.406 81.185 81.582 -0.4952 35 14 3 0 0 0 0.81107 1 44907 44907 0 0 1 1775000 76083 6318 50748 51851 88738 88738 0.04012835864693898 WPVWVQVFS 9 Unmodified _WPVWVQVFS_ 0 0 0 ENST00000478558.1_1_1:153631815-153631890:+|nuORF ENST00000478558.1_1_1:153631815-153631890:+|nuORF ENST00000478558.1_1_1:153631815-153631890:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 383.2046508789062 3 383.202682 1146.58622 NaN NaN NaN NaN NaN NaN NaN 89.332 1 88.83 88.33 89.33 -0.50171 0 0 0 0.85737 1 48843 48843 0.26902 0 1 76084 14020 50749 51852 88739 88739 0.018786372025488163 WPWNMSMTLT 10 Unmodified _WPWNMSMTLT_ 0 0 0 ENST00000561028.5_1_14:24552005-24583941:-|nuORF;ENST00000558280.1_3_14:24552005-24553943:-|nuORF ENST00000561028.5_1_14:24552005-24583941:-|nuORF ENST00000561028.5_1_14:24552005-24583941:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.8597412109375 3 422.85971 1265.5573 0.40877 0.00017285 -0.42955 -0.00018164 -0.020777 -8.7859E-06 422.85964987056525 63.243 0.26973 63.221 63.109 63.379 -0.021614 29 13 3 0 0 0 0.70951 1 34607 34607 0.77653 0.078866 1 5415700 76085 15276 50750 51853 88740 88740 -0.0648559148039567 WPWQVSITY 9 Unmodified _WPWQVSITY_ 0 0 0 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2962646484375 2 590.295299 1178.57605 1.9721 0.0011641 -0.14999 -8.8536E-05 1.8221 0.0010756 590.2947349562213 94.427 0.58525 94.441 94.083 94.668 0.014244 62 21 4 0 0 0 0.019303 2 52392 52392;52499 64.236 40.216 1 8294200 76086 738 50751 51854 88741;88742 88741 -0.006099705226688457 WPWQVSITY 9 Unmodified _WPWQVSITY_ 0 0 0 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 ENSG00000052344|ENST00000317508|PRSS8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2955932617188 2 590.295299 1178.57605 0.52088 0.00030747 0.27419 0.00016185 0.79506 0.00046932 590.2955132150638 99.919 0.17416 93.744 93.664 93.838 -6.1757 33 12 3 0 0 0 0.010818 1 66653 66653 78.149 38.2 1 185010000 76087 738 50751 51854 88743 88743 -0.006099705226688457 WPWQVSLQY 9 Unmodified _WPWQVSLQY_ 0 0 0 CELA3B-PRSS1|1|fusion;CELA3A-CTRB2|2|fusion;CELA3A-CTRB2|1|fusion;ENSG00000215704|ENST00000375910|CELA2B;ENSG00000142615|ENST00000359621|CELA2A;CELA3A-CTRC|1|fusion;ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A;CTRC-CELA3A|1|fusion CELA3B-PRSS1|1|fusion CELA3B-PRSS1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.8013916015625 2 603.800749 1205.58694 1.2305 0.00074297 -0.15796 -9.5374E-05 1.0725 0.0006476 603.8004939738512 92.068 0.53609 92.098 91.8 92.336 0.03019 50 19 3 0 0 0 0.012148 2 51112 51112;51215 74.423 0 1 10017000 + 76088 59 50752 51855 88744;88745 88744 -0.007625681483659719 WPWQVSLQY 9 Unmodified _WPWQVSLQY_ 0 0 0 CELA3B-PRSS1|1|fusion;CELA3A-CTRB2|2|fusion;CELA3A-CTRB2|1|fusion;ENSG00000215704|ENST00000375910|CELA2B;ENSG00000142615|ENST00000359621|CELA2A;CELA3A-CTRC|1|fusion;ENSG00000219073|ENST00000337107|CELA3B;ENSG00000142789|ENST00000290122|CELA3A;CTRC-CELA3A|1|fusion CELA3B-PRSS1|1|fusion CELA3B-PRSS1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3035888671875 2 603.800749 1205.58694 0.51765 0.00031256 -0.29659 -0.00017908 0.22106 0.00013348 603.8005609262433 99.454 0.17718 93.278 93.188 93.365 -6.1757 35 11 4 0 0 0 0.010818 1 66193 66193 78.149 0 1 198080000 + 76089 59 50752 51855 88746 88746 -0.007625681483659719 WPWRTKRWWLW 11 Unmodified _WPWRTKRWWLW_ 0 0 0 REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 850.9551391601562 2 850.951687 1699.88882 NaN NaN NaN NaN NaN NaN NaN 88.78 1 88.78 88.28 89.28 0 0 0 0 0.9435 1 49134 49134 0 0 1 + 76090 26603 50753 51856 88747 88747 0.06687197661631217 WPWRWREWRPW 11 Unmodified _WPWRWREWRPW_ 0 0 0 ENST00000589087.5_1_19:2806818-2807876:+|nuORF ENST00000589087.5_1_19:2806818-2807876:+|nuORF ENST00000589087.5_1_19:2806818-2807876:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 870.9393310546875 2 870.936568 1739.85858 NaN NaN NaN NaN NaN NaN NaN 68.785 1 68.811 68.311 69.311 0.025146 0 0 0 0.9435 1 37792 37792 0 0 1 76091 15659 50754 51857 88748 88748 0.018248389964355738 WPYFIDTF 8 Unmodified _WPYFIDTF_ 0 0 0 REV__ENST00000260129.5_1_8:56737312-56737378:+|nuORF REV__ENST00000260129.5_1_8:56737312-56737378:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7586059570312 2 544.758018 1087.50148 0.060155 3.277E-05 1.0809 0.00058885 1.1411 0.00062162 544.7585664863145 58.933 0.3146 58.442 58.31 58.625 -0.49079 35 14 3 0 0 0 0.77907 1 32131 32131 10.183 2.2732 1 6212800 + 76092 24955 50755 51858 88749 88749 -0.03876733334072924 WQAERGWL 8 Unmodified _WQAERGWL_ 0 0 0 REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF REV__ENST00000435221.6_1_1:2487266-2487602:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2637329101562 2 523.264333 1044.51411 0.68139 0.00035654 -1.1225 -0.00058737 -0.44113 -0.00023083 523.2641704891793 57.796 0.30914 57.796 57.681 57.99 0 31 13 3 0 0 0 0.72953 1 32158 32158 14.582 0 1 3171800 + 76093 27016 50756 51859 88750 88750 -0.0063627715114762395 WQAGGHPF 8 Unmodified _WQAGGHPF_ 0 0 0 REV__ENST00000533076.5_2_11:47429076-47433900:+|nuORF REV__ENST00000533076.5_2_11:47429076-47433900:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.2110290527344 2 450.211569 898.408586 NaN NaN NaN NaN NaN NaN NaN 103.28 1 103.23 102.73 103.73 -0.047928 0 0 0 0.97444 1 57355 57355 0.79363 0 1 + 76094 28374 50757 51860 88751 88751 -0.04468193276773036 WQANLRLI 8 Unmodified _WQANLRLI_ 0 0 0 ENSG00000151247|ENST00000450253|EIF4E;nc|ENSG00000151247|P06730-3|EIF4E;nc|ENSG00000151247|P06730-2|EIF4E;ENST00000507665.5_1_4:99808220-99850263:-|nuORF ENSG00000151247|ENST00000450253|EIF4E ENSG00000151247|ENST00000450253|EIF4E MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2981262207031 2 507.298176 1012.5818 NaN NaN NaN NaN NaN NaN NaN 91.839 1 91.839 91.339 92.339 0 0 0 0 0.97444 1 50787 50787 0.79363 0 1 76095 6101 50758 51861 88752 88752 0.07601172779641274 WQFPPLAALHT 11 Unmodified _WQFPPLAALHT_ 0 0 0 REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF REV__ENST00000459850.5_1_9:139905575-139923366:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 427.5642700195312 3 427.564391 1279.67134 NaN NaN NaN NaN NaN NaN NaN 42.297 1 42.288 41.788 42.788 -0.0088196 0 0 0 0.88164 1 22642 22642 4.1166 0 1 + 76096 27282 50759 51862 88753 88753 0.04269382668371691 WQFSNRKYFLY 11 Unmodified _WQFSNRKYFLY_ 0 0 0 REV__ENST00000416708.1_1_7:46017982-46019554:+|nuORF REV__ENST00000416708.1_1_7:46017982-46019554:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 776.3902587890625 2 776.390793 1550.76703 0.025821 2.0047E-05 -2.2806 -0.0017706 -2.2548 -0.0017506 776.390026891687 58.543 0.21017 58.543 58.467 58.677 0 18 8 3 0 0 0 0.71341 1 32597 32597 2.9952 1.6657 1 1592500 + 76097 26779 50760 51863 88754 88754 0.013681107886213795 WQKIPLWGQ 9 Unmodified _WQKIPLWGQ_ 0 0 0 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 nc|ENSG00000137726|Q9H0Q3-2|FXYD6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.8819274902344 3 385.881831 1154.62366 0.21436 8.2718E-05 1.0577 0.00040813 1.272 0.00049085 385.88195114676597 61.628 0.25503 61.596 61.476 61.731 -0.032787 26 12 3 0 0 0 0.49272 1 33637 33637 8.1555 0 1 7433000 76098 16220 50761 51864 88755 88755 0.05253728468187546 WQLAHSICSF 10 Unmodified _WQLAHSICSF_ 0 0 0 REV__nc|ENSG00000136877|Q05932-3|FPGS REV__nc|ENSG00000136877|Q05932-3|FPGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 397.85888671875 3 397.858698 1190.55426 1.5181 0.00060397 0.44469 0.00017692 1.9627 0.0007809 397.85892466899355 95.741 0.2677 89.566 89.446 89.714 -6.1757 24 16 2 0 0 0 0.67033 1 63462 63462 3.3196 0 1 12075000 + 76099 20192 50762 51865 88756 88756 -0.03339098542915053 WQMAVLDRLC 10 Unmodified _WQMAVLDRLC_ 0 0 0 REV__nc|ENSG00000185453|Q86XI8|ZSWIM9 REV__nc|ENSG00000185453|Q86XI8|ZSWIM9 MSMS AL20221201_MKP_PDAC_01 4 617.8082275390625 2 617.807193 1233.59983 NaN NaN NaN NaN NaN NaN NaN 86.986 1 80.811 80.311 81.311 -6.1757 0 0 0 0.8671 1 57343 57343 9.3831 0 1 + 76100 23502 50763 51866 88757 88757 -0.007621963521614816 WQNCEWMLF 9 Unmodified _WQNCEWMLF_ 0 0 0 REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|159|2|anti-sense REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|159|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.5126953125 3 419.512422 1255.51544 0.052626 2.2077E-05 0.55215 0.00023163 0.60478 0.00025371 419.51267946459734 20.46 0.1499 20.471 20.407 20.557 0.010553 12 7 2 0 0 0 0.61256 1 10455 10455 0.26902 0 1 841380 + 76101 29369 50764 51867 88758 88758 -0.10210147168936601 WQPCYCVPF 9 Unmodified _WQPCYCVPF_ 0 0 0 REV__ENST00000487676.1_1_6:32630010-32630055:-|nuORF REV__ENST00000487676.1_1_6:32630010-32630055:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7440795898438 2 571.743531 1141.47251 -0.0085076 -4.8642E-06 0.57413 0.00032825 0.56562 0.00032339 571.7440056214597 71.029 0.31435 71.029 70.873 71.187 0 43 14 4 0 0 0 0.54444 1 39629 39629 4.756 4.756 1 5718600 + 76102 27832 50765 51868 88759 88759 -0.0925691722634383 WQPPLSLDHF 10 Unmodified _WQPPLSLDHF_ 0 0 0 ENSG00000123496|ENST00000243213|IL13RA2 ENSG00000123496|ENST00000243213|IL13RA2 ENSG00000123496|ENST00000243213|IL13RA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.8771362304688 3 413.876746 1238.60841 -0.012132 -5.0213E-06 -0.92547 -0.00038303 -0.9376 -0.00038805 413.8761548341402 34.241 0.20781 34.268 34.184 34.391 0.027405 13 9 2 0 0 0 0.68719 1 18055 18055 2.086 0 1 1363300 76103 3714 50766 51869 88760 88760 -0.0013518311968709895 WQPWWWWIWWQ 11 Unmodified _WQPWWWWIWWQ_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 894.4237670898438 2 894.417146 1786.81974 NaN NaN NaN NaN NaN NaN NaN 26.944 1 26.944 26.444 27.444 0 0 0 0 0.9435 1 13867 13867 0 0 1 76104 77 50767 51870 88761 88761 -0.04219886357918767 WQQQHLHNMP 10 Unmodified _WQQQHLHNMP_ 0 0 0 nc|ENSG00000081189|Q06413-4|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-2|MEF2C;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000081189|Q06413-5|MEF2C nc|ENSG00000081189|Q06413-4|MEF2C nc|ENSG00000081189|Q06413-4|MEF2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.208740234375 3 440.208501 1317.60367 0.33275 0.00014648 1.194 0.00052562 1.5268 0.0006721 440.2083687673958 17.718 0.47084 17.723 17.546 18.017 0.0050564 82 33 5 0 0 0 0.72196 1 8897 8897 0.15932 0 1 2963700 76105 1320 50768 51871 88762 88762 -0.042423905340911006 WQRLLLRFKIL 11 Unmodified _WQRLLLRFKIL_ 0 0 0 ENSG00000110944|ENST00000228534|IL23A ENSG00000110944|ENST00000228534|IL23A ENSG00000110944|ENST00000228534|IL23A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 743.4749145507812 2 743.474463 1484.93437 NaN NaN NaN NaN NaN NaN NaN 81.332 1 81.332 80.832 81.832 0 0 0 0 0.9435 1 45143 45143 0 0 1 76106 2755 50769 51872 88763 88763 0.2113042312403195 WQRMIVLYH 9 Unmodified _WQRMIVLYH_ 0 0 0 REV__nc|ENSG00000254769|Q8NGN8|OR4A4P REV__nc|ENSG00000254769|Q8NGN8|OR4A4P MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.8900451660156 3 415.890221 1244.64883 0.83037 0.00034534 1.1603 0.00048254 1.9906 0.00082789 415.88994932328654 18 0.21473 15.41 15.275 15.489 -2.5893 17 13 2 0 0 0 0.47846 1 9437 9437 8.7454 0.3011 1 1980600 + 76107 24430 50770 51873 88764 88764 0.036294599990924326 WQRRPRRRRRL 11 Unmodified _WQRRPRRRRRL_ 0 0 0 REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF REV__ENST00000295206.6_1_2:119600812-119604160:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 818.50048828125 2 818.503807 1634.99306 NaN NaN NaN NaN NaN NaN NaN 103.38 1 97.206 96.706 97.706 -6.1757 0 0 0 0.9435 1 69317 69317 0 0 1 + 76108 25261 50771 51874 88765 88765 0.20096337261679764 WQRWGSQIM 9 Unmodified _WQRWGSQIM_ 0 0 0 ENST00000261735.3_1_12:112457644-112459971:+|nuORF ENST00000261735.3_1_12:112457644-112459971:+|nuORF ENST00000261735.3_1_12:112457644-112459971:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.8629455566406 3 397.862442 1190.5655 NaN NaN NaN NaN NaN NaN NaN 16.601 1 14.044 13.544 14.544 -2.557 0 0 0 0.50124 1 8612 8612 10.8 3.3224 1 76109 11251 50772 51875 88766 88766 -0.02216276448757526 WQRWRRYKYRF 11 Unmodified _WQRWRRYKYRF_ 0 0 0 nc|ENSG00000155542|Q8NE22-2|SETD9;ENSG00000155542|ENST00000285947|SETD9 nc|ENSG00000155542|Q8NE22-2|SETD9 nc|ENSG00000155542|Q8NE22-2|SETD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 872.9695434570312 2 872.9684 1743.92225 NaN NaN NaN NaN NaN NaN NaN 75.706 1 75.706 75.206 76.206 0 0 0 0 0.9435 1 42106 42106 0 0 1 76110 6394 50773 51876 88767 88767 0.08004199433526082 WQRWTRLR 8 Unmodified _WQRWTRLR_ 0 0 0 nc|ENSG00000131018|Q8NF91-4|SYNE1;ENSG00000131018|ENST00000367255|SYNE1;ENST00000490135.6_1_6:152637953-152655276:-|nuORF;nc|ENSG00000131018|Q8NF91-7|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 nc|ENSG00000131018|Q8NF91-4|SYNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.337646484375 2 601.338698 1200.66284 2.5848 0.0015544 -1.8865 -0.0011344 0.69835 0.00041994 601.3372155251377 97.092 0.33177 97.085 96.9 97.232 -0.007019 30 12 3 0 0 0 0.74163 1 53886 53886 13.508 1.2672 1 25919000 76111 4286 50774 51877 88768 88768 0.07053873542395195 WQTEDHNYG 9 Unmodified _WQTEDHNYG_ 0 0 0 REV__ENSG00000139174|ENST00000345127|PRICKLE1 REV__ENSG00000139174|ENST00000345127|PRICKLE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2333984375 2 575.233427 1148.4523 NaN NaN NaN NaN NaN NaN NaN 11.986 1 11.998 11.498 12.498 0.012355 0 0 0 0.8622 1 5914 5914 0 0 1 + 76112 20391 50775 51878 88769 88769 -0.11598673360958855 WQTVKELLQFL 11 Unmodified _WQTVKELLQFL_ 0 0 0 chr2:160098094-160107679|46|19.63|0.11|7.48|-|0|None,ITGB6|1 chr2:160098094-160107679|46|19.63|0.11|7.48|-|0|None,ITGB6|1 chr2:160098094-160107679|46|19.63|0.11|7.48|-|0|None,ITGB6|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 702.8966674804688 2 702.89792 1403.78129 NaN NaN NaN NaN NaN NaN NaN 71.501 1 71.024 70.524 71.524 -0.47735 0 0 0 0.90364 1 39133 39133 7.1017 1.3699 1 76113 106 50776 51879 88770 88770 0.095547632168973 WQVWDRCDQKR 11 Unmodified _WQVWDRCDQKR_ 0 0 0 REV__ENST00000438320.6_2_4:183836134-183836680:-|nuORF REV__ENST00000438320.6_2_4:183836134-183836680:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.2438354492188 3 507.245615 1518.71502 -0.55412 -0.00028108 -1.4969 -0.00075931 -2.051 -0.0010404 507.24478246098306 21.712 0.58126 21.735 21.539 22.121 0.022896 51 28 2 0 0 0 0.74429 1 11062 11062 0.094841 0 1 1253300 + 76114 27049 50777 51880 88771 88771 -0.023593758968218026 WQWRRREVQWR 11 Unmodified _WQWRRREVQWR_ 0 0 0 REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF REV__ENST00000508390.1_1_3:131245302-131245881:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 843.9502563476562 2 843.447831 1684.88111 0.97164 0.00081953 -0.7108 -0.00059952 0.26084 0.00022 843.4468359938119 91.686 0.36048 85.51 85.27 85.631 -6.1757 32 19 2 0 0 0 0.7453 1 60532 60532 0 0 1 12204000 + 76115 28115 50778 51881 88772 88772 0.06606438394032921 WQWWKKRRRRR 11 Unmodified _WQWWKKRRRRR_ 0 0 0 ENST00000324344.8_1_16:20911624-20911678:-|nuORF ENST00000324344.8_1_16:20911624-20911678:-|nuORF ENST00000324344.8_1_16:20911624-20911678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 871.5072021484375 2 871.508558 1741.00256 NaN NaN NaN NaN NaN NaN NaN 65.233 1 65.233 64.733 65.733 7.6294E-06 0 0 0 0.9435 1 35750 35750 0 0 1 76116 11798 50779 51882 88773 88773 0.16170105547212188 WRAELGAWP 9 Unmodified _WRAELGAWP_ 0 0 0 REV__ENSG00000150768|ENST00000280346|DLAT REV__ENSG00000150768|ENST00000280346|DLAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.281005859375 2 543.279983 1084.54541 NaN NaN NaN NaN NaN NaN NaN 18.558 1 18.581 18.081 19.081 0.023106 0 0 0 0.85737 1 9313 9313 0.6015 0 1 + 76117 21038 50780 51883 88774 88774 0.006522958829464187 WRANWSSRR 9 Unmodified _WRANWSSRR_ 0 0 0 REV__ENST00000494090.6_1_9:116999272-117027356:+|nuORF REV__ENST00000494090.6_1_9:116999272-117027356:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8797302246094 3 406.879484 1217.61662 NaN NaN NaN NaN NaN NaN NaN 7.6792 1 7.6944 7.1944 8.1944 0.015238 0 0 0 0.8622 1 3830 3830 0 0 1 + 76118 27932 50781 51884 88775 88775 0.01651808640303898 WRARYYYHRLD 11 Unmodified _WRARYYYHRLD_ 0 0 0 REV__ENSG00000181523|ENST00000326317|SGSH REV__ENSG00000181523|ENST00000326317|SGSH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.2291259765625 2 799.902391 1597.79023 NaN NaN NaN NaN NaN NaN NaN 107.59 1 107.54 107.04 108.04 -0.047607 0 0 0 0.9435 1 59606 59606 0 0 1 + 76119 23209 50782 51885 88776 88776 0.015245496259240099 WRAWDWWVFSY 11 Unmodified _WRAWDWWVFSY_ 0 0 0 REV__ENSG00000108784|ENST00000225927|NAGLU REV__ENSG00000108784|ENST00000225927|NAGLU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.5830078125 3 534.582333 1600.72517 0.4158 0.00022228 0.77729 0.00041553 1.1931 0.00063781 534.9171711036142 53.794 0.15977 53.335 53.215 53.375 -0.45927 14 7 2 0 0 0 0.74429 1 29132 29132 0.094841 0 1 3209000 + 76120 18626 50783 51886 88777 88777 -0.05116444899931594 WRCCRPTL 8 Unmodified _WRCCRPTL_ 0 0 0 nc|ENSG00000184887|Q96KE9-1|BTBD6;ENSG00000184887|ENST00000392554|BTBD6 nc|ENSG00000184887|Q96KE9-1|BTBD6 nc|ENSG00000184887|Q96KE9-1|BTBD6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.748046875 2 517.754764 1033.49497 NaN NaN NaN NaN NaN NaN NaN 76.377 1 76.377 75.877 76.877 0 0 0 0 0.97444 1 42469 42469 5.2307 0.47466 1 76121 9296 50784 51887 88778 88778 -0.02043273038066218 WRCGCVGG 8 Unmodified _WRCGCVGG_ 0 0 0 ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF ENST00000341948.6_1_5:140595634-140595910:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.3468627929688 1 837.349439 836.342163 -0.0018466 -1.5462E-06 0.053332 4.4658E-05 0.051485 4.3111E-05 837.3488912839975 102.52 0.14468 102.52 102.47 102.61 0 9 6 2 0 0 0 0.81107 1 56544 56544 0 0 1 789610 76122 11975 50785 51888 88779 88779 -0.08255468434663271 WRDGGGRGPDE 11 Unmodified _WRDGGGRGPDE_ 0 0 0 PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-4|PRRC2A PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant PRRC2A|p.P1448Rfs*43|1|0.1|ENSG00000204469|chr6:31633398-31633398|C/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.1824340820312 3 401.183009 1200.5272 0.29324 0.00011764 -1.7738 -0.00071162 -1.4806 -0.00059397 401.1819477575979 23.682 0.67602 20.855 20.537 21.213 -2.8273 95 40 3 0 0 0 0.6889 1 12789 12789 2.4348 1.22 1 15195000 76123 10288 50786 51889 88780 88780 -0.0650449082970681 WRDHWMQCVYF 11 Unmodified _WRDHWMQCVYF_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 786.3404541015625 2 785.839556 1569.66456 0.4357 0.00034239 0.96055 0.00075483 1.3962 0.0010972 785.8406797443226 48.845 0.27322 48.801 48.654 48.927 -0.04369 38 13 4 0 0 0 0.73115 1 26342 26342 1.3295 0.13619 1 8901000 76124 4425 50787 51890 88781 88781 -0.09748621546168579 WRDHWMQCVYF 11 Unmodified _WRDHWMQCVYF_ 0 0 0 nc|ENSG00000132600|Q9NVM4-2|PRMT7;nc|ENSG00000132600|Q9NVM4-3|PRMT7;ENSG00000132600|ENST00000441236|PRMT7;ENST00000565356.5_1_16:68349816-68386396:+|nuORF;nc|ENSG00000132600|Q9NVM4-4|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 nc|ENSG00000132600|Q9NVM4-2|PRMT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 786.3428344726562 2 785.839556 1569.66456 1.3563 0.0010658 0.80257 0.00063069 2.1588 0.0016965 785.8405838263168 55.26 0.44339 49.339 49.143 49.587 -5.9211 83 27 4 0 0 0 0.59689 1 35047 35047 11.495 6.5977 1 60654000 76125 4425 50787 51890 88782 88782 -0.09748621546168579 WRDRIWGFC 9 Unmodified _WRDRIWGFC_ 0 0 0 ENST00000360620.7_1_7:100400564-100401029:-|nuORF ENST00000360620.7_1_7:100400564-100401029:-|nuORF ENST00000360620.7_1_7:100400564-100401029:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.7980346679688 2 619.798017 1237.58148 NaN NaN NaN NaN NaN NaN NaN 79.877 1 79.387 78.887 79.887 -0.48932 0 0 0 0.8622 1 43751 43751 0 0 1 76126 12169 50788 51891 88783 88783 -0.027805702118484987 WRECRRAS 8 Unmodified _WRECRRAS_ 0 0 0 REV__ENST00000494540.5_1_10:38645356-38645401:+|nuORF REV__ENST00000494540.5_1_10:38645356-38645401:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2642822265625 2 532.264342 1062.51413 NaN NaN NaN NaN NaN NaN NaN 15.985 1 15.985 15.485 16.485 0 0 0 0 0.97444 1 7752 7752 0 0 1 + 76127 27937 50789 51892 88784 88784 -0.014626004228148304 WREEEERRRWY 11 Unmodified _WREEEERRRWY_ 0 0 0 REV__ENSG00000056097|ENST00000265069|ZFR REV__ENSG00000056097|ENST00000265069|ZFR MSMS AL20221201_MKP_PDAC_01 4 565.608642578125 3 565.609722 1693.80734 NaN NaN NaN NaN NaN NaN NaN 98.604 1 92.428 91.928 92.928 -6.1757 0 0 0 0.94337 1 65430 65430 0.094841 0.094841 1 + 76128 17295 50790 51893 88785 88785 -0.011815745589501603 WRERQQFY 8 Unmodified _WRERQQFY_ 0 0 0 REV__ENSG00000100304|ENST00000216129|TTLL12 REV__ENSG00000100304|ENST00000216129|TTLL12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7979736328125 2 606.799072 1211.58359 0.22863 0.00013873 0.053737 3.2607E-05 0.28237 0.00017134 606.7986506051418 74.013 0.35869 74.013 73.807 74.166 0 27 16 2 0 0 0 0.80975 1 41261 41261 0.79363 0 1 1092600 + 76129 18040 50791 51894 88786 88786 -0.013738182023871559 WRFIRNWQRWH 11 Unmodified _WRFIRNWQRWH_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S REV__ENSG00000081248|ENST00000362061|CACNA1S MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 842.9363403320312 2 842.939642 1683.86473 NaN NaN NaN NaN NaN NaN NaN 98.978 1 98.978 98.478 99.478 0 0 0 0 0.9435 1 54654 54654 0 0 1 + 76130 17689 50792 51895 88787 88787 0.050153572279441505 WRFRCYYYYMK 11 Unmodified _WRFRCYYYYMK_ 0 0 0 LILRB5|p.R200M|1|0.17|ENSG00000105609|chr19:54256099-54256099|C/A|missense_variant LILRB5|p.R200M|1|0.17|ENSG00000105609|chr19:54256099-54256099|C/A|missense_variant LILRB5|p.R200M|1|0.17|ENSG00000105609|chr19:54256099-54256099|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.595458984375 3 560.260096 1677.75846 -0.36755 -0.00020593 1.7808 0.00099771 1.4133 0.00079179 560.5951932529574 14.74 0.060637 14.709 14.677 14.737 -0.030868 22 15 2 0 0 0 0.7453 1 7188 7188 0 0 1 656050 76131 15977 50793 51896 88788 88788 -0.053309024438704 WRFRCYYYYRK 11 Unmodified _WRFRCYYYYRK_ 0 0 0 ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.41943359375 2 852.41682 1702.81909 NaN NaN NaN NaN NaN NaN NaN 31.955 1 31.955 31.455 32.455 0 0 0 0 0.9435 1 16666 16666 0 0 1 76132 2339 50794 51897 88789 88789 -0.004210490692912572 WRFRCYYYYRK 11 Unmodified _WRFRCYYYYRK_ 0 0 0 ENSG00000105609|ENST00000449561|LILRB5;nc|ENSG00000105609|O75023|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 852.4172973632812 2 852.41682 1702.81909 NaN NaN NaN NaN NaN NaN NaN 70.397 1 70.397 69.897 70.897 0 0 0 0 0.9435 1 39225 39225 0 0 1 76133 2339 50794 51897 88790 88790 -0.004210490692912572 WRFRGRSW 8 Unmodified _WRFRGRSW_ 0 0 0 ENST00000357520.8_1_7:93633612-93633666:-|nuORF ENST00000357520.8_1_7:93633612-93633666:-|nuORF ENST00000357520.8_1_7:93633612-93633666:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.8046264648438 2 575.804491 1149.59443 NaN NaN NaN NaN NaN NaN NaN 85.96 1 85.96 85.46 86.46 0 0 0 0 0.97444 1 47624 47624 0 0 1 76134 12113 50795 51898 88791 88791 0.025616289625531863 WRGEDLSL 8 Unmodified _WRGEDLSL_ 0 0 0 ENST00000284548.15_1_1:228475978-228476398:+|nuORF ENST00000284548.15_1_1:228475978-228476398:+|nuORF ENST00000284548.15_1_1:228475978-228476398:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2258911132812 2 488.248349 974.482145 -0.68432 -0.00033412 0.33438 0.00016326 -0.34994 -0.00017086 488.24854170310465 32.099 0.28286 32.099 31.94 32.223 0 27 13 3 0 0 0 8.7369 1 16674 16674 13.508 0.97634 1 2254000 76135 11436 50796 51899 88792 88792 -0.006116896249409365 WRGKIPPRRS 10 Unmodified _WRGKIPPRRS_ 0 0 0 ENST00000401957.6_1_7:22233026-22233254:-|nuORF ENST00000401957.6_1_7:22233026-22233254:-|nuORF ENST00000401957.6_1_7:22233026-22233254:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.2505798339844 3 418.251029 1251.73126 NaN NaN NaN NaN NaN NaN NaN 51.502 1 51.448 50.948 51.948 -0.053871 0 0 0 0.98857 1 27882 27882 1.9064 0 1 76136 12887 50797 51900 88793 88793 0.11546118122259941 WRGKRWWQC 9 Unmodified _WRGKRWWQC_ 0 0 0 ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.2269592285156 3 435.885581 1304.63491 NaN NaN NaN NaN NaN NaN NaN 18.474 1 18.497 17.997 18.997 0.023106 0 0 0 0.86004 1 9266 9266 0.26902 0.033176 1 76137 15214 50798 51901 88794 88794 -0.005217727093395297 WRGKRWWQC 9 Unmodified _WRGKRWWQC_ 0 0 0 ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF ENST00000554594.1_1_14:73140759-73181199:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 435.5489807128906 3 435.885581 1304.63491 NaN NaN NaN NaN NaN NaN NaN 19.17 1 19.177 18.677 19.677 0.0078487 0 0 0 0.86004 1 9742 9742 0.26902 0.1097 1 76138 15214 50798 51901 88795 88795 -0.005217727093395297 WRGPAPRPR 9 Unmodified _WRGPAPRPR_ 0 0 0 ENST00000227507.2_1_11:69468284-69468383:+|nuORF ENST00000227507.2_1_11:69468284-69468383:+|nuORF ENST00000227507.2_1_11:69468284-69468383:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.8772583007812 3 364.877303 1091.61008 NaN NaN NaN NaN NaN NaN NaN 15.923 1 15.923 15.423 16.423 0 0 0 0 0.8622 1 7717 7717 0 0 1 76139 11051 50799 51902 88796 88796 0.06793915479579482 WRGQDVVQEWQ 11 Unmodified _WRGQDVVQEWQ_ 0 0 0 ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A ENSG00000166963|ENST00000300231|MAP1A ENSG00000166963|ENST00000300231|MAP1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 716.3458862304688 2 715.844207 1429.67386 -0.19854 -0.00014212 1.0959 0.00078451 0.89738 0.00064239 715.8452942611685 53.632 0.3267 53.569 53.463 53.789 -0.063423 61 22 3 0 0 0 0.65846 1 29197 29197 8.1555 2.4237 1 42150000 76140 7558 50800 51903 88797 88797 -0.02378813664631707 WRGRFTPF 8 Unmodified _WRGRFTPF_ 0 0 0 REV__ENST00000450253.6_1_4:99850572-99850698:-|nuORF REV__ENST00000450253.6_1_4:99850572-99850698:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7828979492188 2 533.782693 1065.55083 0.97443 0.00052013 0.39462 0.00021064 1.3691 0.00073078 533.783293384513 47.293 0.69524 42.213 41.955 42.65 -5.0805 85 45 2 0 0 0 0.57045 1 29284 29284 28.487 0 1 101020000 + 76141 27199 50801 51904 88798 88798 0.02068019465400539 WRGRWRRRWGW 11 Unmodified _WRGRWRRRWGW_ 0 0 0 ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 829.4442749023438 2 829.445426 1656.8763 NaN NaN NaN NaN NaN NaN NaN 92.886 1 86.711 86.211 87.211 -6.1757 0 0 0 0.94307 1 61442 61442 0.30703 0.30703 1 76142 11011 50802 51905 88799 88799 0.07413599041933594 WRGRWRRRWGW 11 Unmodified _WRGRWRRRWGW_ 0 0 0 ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF ENST00000216410.7_1_14:53258232-53258316:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 829.4468383789062 2 829.445426 1656.8763 NaN NaN NaN NaN NaN NaN NaN 93.073 1 86.898 86.398 87.398 -6.1757 0 0 0 0.94307 1 61580 61580 0.30703 0.30703 1 76143 11011 50802 51905 88800 88800 0.07413599041933594 WRGTRMNEQEQ 11 Unmodified _WRGTRMNEQEQ_ 0 0 0 ENST00000528637.5_1_11:16902899-16903058:-|nuORF ENST00000528637.5_1_11:16902899-16903058:-|nuORF ENST00000528637.5_1_11:16902899-16903058:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 717.83154296875 2 717.830774 1433.647 0.49001 0.00035174 -0.095634 -6.8649E-05 0.39437 0.00028309 717.8305946718634 64.189 0.28887 63.704 63.511 63.8 -0.48512 23 13 2 0 0 0 0.7187 1 34981 34981 2.4985 1.169 1 1580400 76144 14859 50803 51906 88801 88801 -0.05248245547431907 WRGTRMNEQEQ 11 Unmodified _WRGTRMNEQEQ_ 0 0 0 ENST00000528637.5_1_11:16902899-16903058:-|nuORF ENST00000528637.5_1_11:16902899-16903058:-|nuORF ENST00000528637.5_1_11:16902899-16903058:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 717.830774 1433.647 0.96447 0.00069233 0.2568 0.00018434 1.2213 0.00087667 718.332621739054 63.715 0.25389 63.704 63.571 63.825 -0.010532 0.00041857 0.00038821 NaN 2.4985 23 11 3 NaN NaN NaN NaN 0 NaN NaN 0 2419200 76145 14859 50803 51906 -0.05248245547431907 WRHFLLWRRKF 11 Unmodified _WRHFLLWRRKF_ 0 0 0 REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 822.9699096679688 2 822.972954 1643.93135 NaN NaN NaN NaN NaN NaN NaN 86.583 1 86.08 85.58 86.58 -0.50318 0 0 0 0.9435 1 47373 47373 0 0 1 + 76146 29281 50804 51907 88802 88802 0.13514592789829294 WRHFLLWRRKF 11 Unmodified _WRHFLLWRRKF_ 0 0 0 REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.9906005859375 4 411.990115 1643.93135 1.0482 0.00043183 0.60988 0.00025127 1.658 0.0006831 411.99051741610947 18.975 0.1315 16.353 16.291 16.423 -2.6215 21 8 3 0 0 0 0.74157 1 10038 10038 0.094841 0.094841 1 2800800 + 76147 29281 50804 51907 88803 88803 0.13514592789829294 WRHGCHPA 8 Unmodified _WRHGCHPA_ 0 0 0 REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2214050292969 2 482.221946 962.429338 0.56828 0.00027404 -0.78819 -0.00038008 -0.21991 -0.00010604 482.2214392401881 89.133 0.42511 88.628 88.394 88.819 -0.50423 54 18 4 0 0 0 0.80975 1 48659 48659 0.79363 0.10326 1 2110600 + 76148 18412 50805 51908 88804 88804 -0.05337926168760987 WRHGRIHI 8 Unmodified _WRHGRIHI_ 0 0 0 nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2 nc|ENSG00000113327|P18507-1|GABRG2 nc|ENSG00000113327|P18507-1|GABRG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.80615234375 2 537.807034 1073.59952 0.092407 4.9697E-05 -1.6028 -0.00086198 -1.5104 -0.00081228 537.8062521081922 41.131 0.38683 40.828 40.622 41.009 -0.30304 43 18 3 0 0 0 0.75262 1 21856 21856 12.532 1.732 1 8649400 76149 2959 50806 51909 88805 88805 0.06565932825174059 WRHSWLKWRIR 11 Unmodified _WRHSWLKWRIR_ 0 0 0 ENST00000583590.5_1_17:61869884-61875419:+|nuORF ENST00000583590.5_1_17:61869884-61875419:+|nuORF ENST00000583590.5_1_17:61869884-61875419:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 812.46240234375 2 812.46021 1622.90587 NaN NaN NaN NaN NaN NaN NaN 65.001 1 58.825 58.325 59.325 -6.1757 0 0 0 0.9435 1 42160 42160 0 0 1 76150 15589 50807 51910 88806 88806 0.11933118267438658 WRKACEYK 8 Unmodified _WRKACEYK_ 0 0 0 REV__ENST00000511439.5_1_3:133368770-133375581:-|nuORF REV__ENST00000511439.5_1_3:133368770-133375581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2725830078125 2 542.273844 1082.53313 NaN NaN NaN NaN NaN NaN NaN 96.757 1 96.757 96.257 97.257 0 0 0 0 0.97444 1 53469 53469 0.69038 0 1 + 76151 21813 50808 51911 88807 88807 -0.004830638517660191 WRKAKSNY 8 Unmodified _WRKAKSNY_ 0 0 0 REV__ENSG00000168427|ENST00000409223|KLHL30 REV__ENSG00000168427|ENST00000409223|KLHL30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.5266723632812 3 351.526047 1051.55631 2.1009 0.00073853 0.42955 0.000151 2.5305 0.00088953 351.52623455924834 33.986 0.32631 30 29.824 30.15 -3.9853 19 17 2 0 0 0 0.79783 1 19563 19563 5.7319 0 1 3649800 + 76152 22309 50809 51912 88808 88808 0.03259698257238597 WRKEIHGRIKD 11 Unmodified _WRKEIHGRIKD_ 0 0 0 ENSG00000152760|ENST00000282670|DYNLT5 ENSG00000152760|ENST00000282670|DYNLT5 ENSG00000152760|ENST00000282670|DYNLT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.9404602050781 3 479.940632 1436.80007 0.8693 0.00041721 -1.0423 -0.00050025 -0.17301 -8.3033E-05 479.9399906641023 33.228 0.19846 29.372 29.281 29.48 -3.8562 27 11 3 0 0 0 0.68995 1 19029 19029 5.1984 0.79229 1 20615000 76153 6211 50810 51913 88809 88809 0.09913737631313779 WRKERKRWKAR 11 Unmodified _WRKERKRWKAR_ 0 0 0 REV__nc|ENSG00000100987|Q9NZR4-5|VSX1 REV__nc|ENSG00000100987|Q9NZR4-5|VSX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4762573242188 2 800.476392 1598.93823 NaN NaN NaN NaN NaN NaN NaN 65.203 1 64.719 64.219 65.219 -0.48428 0 0 0 0.9435 1 35580 35580 0 0 1 + 76154 18121 50811 51914 88810 88810 0.16271905670419073 WRKIKLAV 8 Unmodified _WRKIKLAV_ 0 0 0 ENSG00000159248|ENST00000290374|GJD2 ENSG00000159248|ENST00000290374|GJD2 ENSG00000159248|ENST00000290374|GJD2 MSMS AL20221201_MKP_PDAC_01 4 507.0032653808594 2 507.334562 1012.65457 NaN NaN NaN NaN NaN NaN NaN 109.39 1 103.21 102.71 103.71 -6.1757 0 0 0 0.97444 1 73055 73055 0 0 1 76155 6639 50812 51915 88811 88811 0.1487492657306575 WRKRRRRQRFC 11 Unmodified _WRKRRRRQRFC_ 0 0 0 REV__ENST00000598830.5_1_19:18672789-18672912:+|nuORF REV__ENST00000598830.5_1_19:18672789-18672912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.6123657226562 2 824.471118 1646.92768 NaN NaN NaN NaN NaN NaN NaN 24.258 1 24.256 23.756 24.756 -0.0016766 0 0 0 0.9435 1 12393 12393 0 0 1 + 76156 29235 50813 51916 88812 88812 0.13009599744350453 WRKRWFCFDRQ 11 Unmodified _WRKRWFCFDRQ_ 0 0 0 ENSG00000176531|ENST00000292140|PHLDB3 ENSG00000176531|ENST00000292140|PHLDB3 ENSG00000176531|ENST00000292140|PHLDB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 814.4066772460938 2 814.406786 1626.79902 NaN NaN NaN NaN NaN NaN NaN 99.49 1 99.453 98.953 99.953 -0.036301 0 0 0 0.9435 1 55255 55255 0 0 1 76157 8601 50814 51917 88813 88813 0.010691999907294303 WRKRWRRWRWS 11 Unmodified _WRKRWRRWRWS_ 0 0 0 ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 879.9891357421875 2 879.987458 1757.96036 NaN NaN NaN NaN NaN NaN NaN 100.81 1 100.68 100.18 101.18 -0.13293 0 0 0 0.9435 1 55024 55024 0 0 1 76158 11242 50815 51918 88814 88814 0.11170130138862078 WRKSLPHLE 9 Unmodified _WRKSLPHLE_ 0 0 0 nc|ENSG00000160310|P55345-5|PRMT2 nc|ENSG00000160310|P55345-5|PRMT2 nc|ENSG00000160310|P55345-5|PRMT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.5557556152344 3 389.220735 1164.64038 1.7061 0.00066407 0.33249 0.00012941 2.0386 0.00079348 389.2206568201293 33.973 0.39206 29.987 29.824 30.216 -3.9853 48 21 3 0 0 0 0.42049 1 19535 19535 11.495 3.5493 1 8443200 76159 16316 50816 51919 88815 88815 0.0646422935415103 WRKVQRAKKKK 11 Unmodified _WRKVQRAKKKK_ 0 0 0 ENST00000513811.5_1_4:15471657-15545375:+|nuORF;nc|ENSG00000048342|Q9P2K1-2|CC2D2A;ENSG00000048342|ENST00000424120|CC2D2A ENST00000513811.5_1_4:15471657-15545375:+|nuORF ENST00000513811.5_1_4:15471657-15545375:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 728.47216796875 2 728.472786 1454.93102 NaN NaN NaN NaN NaN NaN NaN 103.75 1 103.7 103.2 104.2 -0.048737 0 0 0 0.9435 1 57613 57613 0 0 1 76160 699 50817 51920 88816 88816 0.22175173069967968 WRLFCVHSL 9 Unmodified _WRLFCVHSL_ 0 0 0 ENST00000413658.6_1_7:99661853-99662162:-|nuORF ENST00000413658.6_1_7:99661853-99662162:-|nuORF ENST00000413658.6_1_7:99661853-99662162:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.8068237304688 2 580.805311 1159.59607 0.33113 0.00019232 2.3017 0.0013369 2.6329 0.0015292 580.8067110870398 39.319 0.22178 39.319 39.202 39.424 0 16 10 2 0 0 0 0.32871 1 21079 21079 15.847 13.544 1 1473200 76161 13001 50818 51921 88817 88817 0.02265501936290093 WRLFCVHSL 9 Unmodified _WRLFCVHSL_ 0 0 0 ENST00000413658.6_1_7:99661853-99662162:-|nuORF ENST00000413658.6_1_7:99661853-99662162:-|nuORF ENST00000413658.6_1_7:99661853-99662162:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 580.805311 1159.59607 0.33113 0.00019232 2.3017 0.0013369 2.6329 0.0015292 580.8067110870398 39.319 0.22178 39.319 39.202 39.424 0 0.037857 -0.00010262 NaN 15.847 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1473200 76162 13001 50818 51921 0.02265501936290093 WRLHPFSFL 9 Unmodified _WRLHPFSFL_ 0 0 0 ENST00000343938.8_1_1:1263308-1263773:+|nuORF ENST00000343938.8_1_1:1263308-1263773:+|nuORF ENST00000343938.8_1_1:1263308-1263773:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 401.3045654296875 3 401.553826 1201.63965 NaN NaN NaN NaN NaN NaN NaN 96.205 1 90.029 89.529 90.529 -6.1757 0 0 0 0.82396 1 63744 63744 2.7352 0.64919 1 76163 12008 50819 51922 88818 88818 0.046894347050965735 WRLLFKKI 8 Unmodified _WRLLFKKI_ 0 0 0 ENST00000456064.1_1_20:10594086-10594842:-|nuORF;ENSG00000213551|ENST00000372950|DNAJC9 ENST00000456064.1_1_20:10594086-10594842:-|nuORF ENST00000456064.1_1_20:10594086-10594842:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.3584594726562 2 552.358037 1102.70152 NaN NaN NaN NaN NaN NaN NaN 15.653 1 15.659 15.159 16.159 0.0057774 0 0 0 0.97444 1 7811 7811 0 0 1 76164 10442 50820 51923 88819 88819 0.1542778612422353 WRLREVRSQPR 11 Unmodified _WRLREVRSQPR_ 0 0 0 ENST00000517775.1_1_5:171519868-171520577:-|nuORF ENST00000517775.1_1_5:171519868-171520577:-|nuORF ENST00000517775.1_1_5:171519868-171520577:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 741.9237670898438 2 741.923658 1481.83276 NaN NaN NaN NaN NaN NaN NaN 31.771 1 28.075 27.575 28.575 -3.6958 0 0 0 0.93669 1 18023 18023 4.897 1.9018 1 76165 14682 50821 51924 88820 88820 0.11111944754156866 WRLRGARRLL 10 Unmodified _WRLRGARRLL_ 0 0 0 REV__ENSG00000166126|ENST00000299155|AMN REV__ENSG00000166126|ENST00000299155|AMN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.91015625 2 648.909822 1295.80509 NaN NaN NaN NaN NaN NaN NaN 17.14 1 17.145 16.645 17.645 0.0050564 0 0 0 1.0061 1 8632 8632 0 0 1 + 76166 22085 50822 51925 88821 88821 0.1690208628460823 WRLRGARRLLP 11 Unmodified _WRLRGARRLLP_ 0 0 0 REV__ENSG00000166126|ENST00000299155|AMN REV__ENSG00000166126|ENST00000299155|AMN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.4450073242188 2 697.436204 1392.85786 4.073 0.0028406 1.482 0.0010336 5.5549 0.0038742 697.4372436612314 98.599 0.23396 98.57 98.432 98.666 -0.028282 26 8 4 0 0 0 0.62014 2 54737 54737;54789 13.042 2.0222 1 27286000 + 76167 22085 50823 51926 88822;88823 88822 0.17714044347417257 WRLRYDCWQM 10 Unmodified _WRLRYDCWQM_ 0 0 0 REV__nc|ENSG00000196811|P07510-2|CHRNG REV__nc|ENSG00000196811|P07510-2|CHRNG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.2272338867188 3 486.225275 1455.65399 NaN NaN NaN NaN NaN NaN NaN 12.662 1 12.672 12.172 13.172 0.0096512 0 0 0 1.0029 1 6245 6245 0.12286 0 1 + 76168 23870 50824 51927 88824 88824 -0.055606042006047574 WRLWGLLLCLA 11 Unmodified _WRLWGLLLCLA_ 0 0 0 REV__ENSG00000178343|ENST00000319234|SHISA3 REV__ENSG00000178343|ENST00000319234|SHISA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 672.3895874023438 2 672.386468 1342.75838 1.5981 0.0010745 2.2019 0.0014805 3.8 0.0025551 672.3875273804259 81.351 0.345 81.411 81.214 81.559 0.059929 22 12 3 0 0 0 0.65108 1 45032 45032 8.7454 3.0136 1 2259400 + 76169 23038 50825 51928 88825 88825 0.10071465618466391 WRPGMVRG 8 Unmodified _WRPGMVRG_ 0 0 0 REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586 REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.1803283691406 2 479.755621 957.49669 NaN NaN NaN NaN NaN NaN NaN 8.9088 1 8.9264 8.4264 9.4264 0.017581 0 0 0 0.97444 1 4428 4428 0 0 1 + 76170 22291 50826 51929 88826 88826 0.016241040422073638 WRPPESYFHF 10 Unmodified _WRPPESYFHF_ 0 0 0 REV__ENSG00000266524|ENST00000580279|GDF10 REV__ENSG00000266524|ENST00000580279|GDF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.88427734375 3 455.884012 1364.63021 0.36716 0.00016738 -0.48947 -0.00022314 -0.12232 -5.5762E-05 455.8838735407144 28.983 0.18461 29.013 28.917 29.102 0.030106 16 7 3 0 0 0 0.67459 1 15115 15115 3.0723 0 1 4674100 + 76171 24607 50827 51930 88827 88827 -0.03752378371132181 WRPRGCRLL 9 Unmodified _WRPRGCRLL_ 0 0 0 ENST00000324096.8_1_19:17836915-17837251:+|nuORF ENST00000324096.8_1_19:17836915-17837251:+|nuORF ENST00000324096.8_1_19:17836915-17837251:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.829345703125 2 578.829652 1155.64475 1.5996 0.00092591 -1.5451 -0.00089436 0.054503 3.1548E-05 578.828747182077 100.56 0.40233 100.52 100.18 100.58 -0.04216 28 14 2 0 0 0 0.078314 2 55775 55775;55887 50.855 16.847 1 9963300 76172 11797 50828 51931 88828;88829 88828 0.07315415296056926 WRPRGCRLL 9 Unmodified _WRPRGCRLL_ 0 0 0 ENST00000324096.8_1_19:17836915-17837251:+|nuORF ENST00000324096.8_1_19:17836915-17837251:+|nuORF ENST00000324096.8_1_19:17836915-17837251:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8299560546875 2 578.829652 1155.64475 0.86728 0.00050201 0.63041 0.0003649 1.4977 0.00086691 578.8297686767698 101.49 0.20352 95.312 95.211 95.414 -6.1757 23 9 3 0 0 0 0.078314 1 68082 68082 50.855 18.55 1 33811000 76173 11797 50828 51931 88830 88830 0.07315415296056926 WRPRRQIWRRR 11 Unmodified _WRPRRQIWRRR_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 833.490234375 2 833.492908 1664.97126 NaN NaN NaN NaN NaN NaN NaN 109.73 1 109.68 109.18 110.18 -0.047607 0 0 0 0.9435 1 60739 60739 0 0 1 + 76174 24931 50829 51932 88831 88831 0.16537532513120823 WRPRWPSGPL 10 Unmodified _WRPRWPSGPL_ 0 0 0 REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 417.8969421386719 3 417.896363 1250.66726 NaN NaN NaN NaN NaN NaN NaN 17.595 1 15.008 14.508 15.508 -2.5866 0 0 0 0.88176 1 9214 9214 7.9454 0 1 + 76175 26485 50830 51933 88832 88832 0.05195337965324143 WRPSLFYKI 9 Unmodified _WRPSLFYKI_ 0 0 0 ENSG00000153060|ENST00000283025|TEKT5 ENSG00000153060|ENST00000283025|TEKT5 ENSG00000153060|ENST00000283025|TEKT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.8985595703125 3 403.897481 1208.67061 NaN NaN NaN NaN NaN NaN NaN 26.547 1 26.574 26.074 27.074 0.026951 0 0 0 0.84021 1 13772 13772 2.7352 0.82882 1 76176 6232 50831 51934 88833 88833 0.07462588019325267 WRPSSLVC 8 Unmodified _WRPSSLVC_ 0 0 0 ENST00000548590.1_1_12:56436718-56436841:+|nuORF ENST00000548590.1_1_12:56436718-56436841:+|nuORF ENST00000548590.1_1_12:56436718-56436841:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2428283691406 2 474.242012 946.469472 1.2961 0.00061467 1.2475 0.00059162 2.5436 0.0012063 474.2422181524652 102.76 0.030212 96.581 96.559 96.589 -6.1757 11 7 2 0 0 0 0.80722 1 68942 68942 2.3027 0 1 2784600 76177 15137 50832 51935 88834 88834 -0.005904242888391309 WRPSVEFP 8 Unmodified _WRPSVEFP_ 0 0 0 ENSG00000172345|ENST00000302824|STARD5 ENSG00000172345|ENST00000302824|STARD5 ENSG00000172345|ENST00000302824|STARD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2611694335938 2 509.261259 1016.50797 NaN NaN NaN NaN NaN NaN NaN 27.813 1 27.813 27.313 28.313 0 0 0 0 0.97444 1 14341 14341 5.2307 0 1 76178 8203 50833 51936 88835 88835 0.00037204617331099143 WRQEERLWEQE 11 Unmodified _WRQEERLWEQE_ 0 0 0 ENSG00000174450|ENST00000567107|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 ENSG00000174450|ENST00000567107|GOLGA6L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 794.87890625 2 794.878778 1587.743 NaN NaN NaN NaN NaN NaN NaN 19.626 1 19.634 19.134 20.134 0.0078487 0 0 0 0.9435 1 9989 9989 0 0 1 76179 8422 50834 51937 88836 88836 -0.027357744357004776 WRQLFTEMFLH 11 Unmodified _WRQLFTEMFLH_ 0 0 0 REV__ENST00000360093.7_1_2:166027051-166032921:-|nuORF REV__ENST00000360093.7_1_2:166027051-166032921:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 754.87841796875 2 754.379371 1506.74419 -0.75738 -0.00057135 -1.5697 -0.0011841 -2.327 -0.0017555 754.378064172028 28.538 0.14716 28.538 28.453 28.6 0 18 7 3 0 0 0 0.67892 1 14741 14741 7.609 2.7119 1 2245300 + 76180 25906 50835 51938 88837 88837 0.011087683994901454 WRQRIRKWRQM 11 Unmodified _WRQRIRKWRQM_ 0 0 0 REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 822.4627685546875 2 822.462427 1642.9103 NaN NaN NaN NaN NaN NaN NaN 23.451 1 23.463 22.963 23.963 0.012396 0 0 0 0.9435 1 11960 11960 0 0 1 + 76181 24614 50836 51939 88838 88838 0.11456259418673653 WRQRIRKWRQM 11 Unmodified _WRQRIRKWRQM_ 0 0 0 REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF REV__ENST00000595455.1_1_19:36244761-36245372:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 822.4594116210938 2 822.462427 1642.9103 NaN NaN NaN NaN NaN NaN NaN 22.62 1 22.637 22.137 23.137 0.01749 0 0 0 0.9435 1 11622 11622 0 0 1 + 76182 24614 50836 51939 88839 88839 0.11456259418673653 WRRAGWEAREW 11 Unmodified _WRRAGWEAREW_ 0 0 0 REV__ENST00000420484.2_1_9:130950179-130953656:-|nuORF REV__ENST00000420484.2_1_9:130950179-130953656:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 752.3759155273438 2 751.873634 1501.73271 0.8446 0.00063503 -1.0631 -0.0007993 -0.21847 -0.00016426 752.3741065465082 73.007 1.2134 66.831 66.276 67.489 -6.1757 163 60 3 0 0 0 0.59689 1 48070 48070 11.495 2.1116 1 55206000 + 76183 26834 50837 51940 88840 88840 0.0019170742036749289 WRRAWFRQWLL 11 Unmodified _WRRAWFRQWLL_ 0 0 0 REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 809.4482421875 2 809.449311 1616.88407 NaN NaN NaN NaN NaN NaN NaN 62.152 1 55.977 55.477 56.477 -6.1757 0 0 0 0.94165 1 40083 40083 1.3295 1.0605 1 + 76184 26424 50838 51941 88841 88841 0.10030313518882394 WRRAWFRQWLL 11 Unmodified _WRRAWFRQWLL_ 0 0 0 REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF REV__ENST00000393640.8_1_16:70432790-70433162:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 809.4495239257812 2 809.449311 1616.88407 NaN NaN NaN NaN NaN NaN NaN 101.68 1 95.506 95.006 96.006 -6.1757 0 0 0 0.9435 1 68244 68244 0 0 1 + 76185 26424 50838 51941 88842 88842 0.10030313518882394 WRRCGWNRRWR 11 Unmodified _WRRCGWNRRWR_ 0 0 0 nc|ENSG00000290842|Q8IVE0|CROCCP3;ENST00000591348.5_1_1:16802327-16812083:-|nuORF nc|ENSG00000290842|Q8IVE0|CROCCP3 nc|ENSG00000290842|Q8IVE0|CROCCP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 816.4210205078125 2 816.421094 1630.82763 NaN NaN NaN NaN NaN NaN NaN 49.056 1 49.056 48.556 49.556 0 0 0 0 0.9435 1 26966 26966 0 0 1 76186 15699 50839 51942 88843 88843 0.0374536241054102 WRRDLRRL 8 Unmodified _WRRDLRRL_ 0 0 0 REV__ENSG00000107957|ENST00000369774|SH3PXD2A REV__ENSG00000107957|ENST00000369774|SH3PXD2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.9033203125 3 390.903741 1169.68939 0.81743 0.00031954 -1.0431 -0.00040776 -0.2257 -8.8225E-05 390.90357308940725 22.487 0.23641 19.709 19.574 19.81 -2.7784 32 12 3 0 0 0 0.74687 1 12064 12064 13.042 0.80181 1 7609500 + 76187 18587 50840 51943 88844 88844 0.11133562433747102 WRRGVLETTLL 11 Unmodified _WRRGVLETTLL_ 0 0 0 ENST00000431802.5_1_2:219524622-219524778:+|nuORF ENST00000431802.5_1_2:219524622-219524778:+|nuORF ENST00000431802.5_1_2:219524622-219524778:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.5975952148438 3 448.597983 1342.77212 0.46145 0.00020701 -0.80223 -0.00035988 -0.34077 -0.00015287 448.5974847563634 33.611 0.30933 33.64 33.411 33.72 0.028934 18 13 2 0 0 0 0.70435 1 17710 17710 3.8459 0.25885 1 1572500 76188 13268 50841 51944 88845 88845 0.11444414651236912 WRRHGHDHQ 9 Unmodified _WRRHGHDHQ_ 0 0 0 SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant SDHA|p.A221Cfs*100|1|0.08|ENSG00000073578|chr5:228219-228220|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.7952270507812 2 614.795186 1227.57582 NaN NaN NaN NaN NaN NaN NaN 15.375 1 15.381 14.881 15.881 0.0057774 0 0 0 0.8622 1 7660 7660 0 0 1 76189 30158 50842 51945 88846 88846 -0.028865326793038548 WRRIFQSSYIR 11 Unmodified _WRRIFQSSYIR_ 0 0 0 ENSG00000145198|ENST00000691901|VWA5B2;ENST00000461141.5_1_3:183952309-183959823:+|nuORF ENSG00000145198|ENST00000691901|VWA5B2 ENSG00000145198|ENST00000691901|VWA5B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.7109375 4 378.711205 1510.81572 -0.25062 -9.4911E-05 -1.0129 -0.00038361 -1.2636 -0.00047853 378.7108793159559 31.825 0.27722 31.855 31.692 31.969 0.030106 27 12 3 0 0 0 0.71728 1 16671 16671 2.6312 1.4164 1 16738000 76190 5673 50843 51946 88847 88847 0.08074024148345416 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 853.1972045898438 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 35.399 1 35.424 34.924 35.924 0.024967 0 0 0 0.9435 1 18710 18710 0 0 1 + 76191 28735 50844 51947 88848 88848 0.13066406556390575 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 853.48828125 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 107.06 1 107.01 106.51 107.51 -0.047607 0 0 0 0.9435 1 59324 59324 0 0 1 + 76192 28735 50844 51947 88849 88849 0.13066406556390575 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 853.4880981445312 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 33.246 1 29.342 28.842 29.842 -3.9034 0 0 0 0.9435 1 19051 19051 0 0 1 + 76193 28735 50844 51947 88850 88850 0.13066406556390575 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 853.4865112304688 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 64.501 1 58.326 57.826 58.826 -6.1757 0 0 0 0.9435 1 41792 41792 0 0 1 + 76194 28735 50844 51947 88851 88851 0.13066406556390575 WRRKRRWKRDY 11 Unmodified _WRRKRRWKRDY_ 0 0 0 REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 853.4848022460938 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 101.68 1 95.501 95.001 96.001 -6.1757 0 0 0 0.9435 1 68240 68240 0 0 1 + 76195 28735 50844 51947 88852 88852 0.13066406556390575 WRRKRRWRGLW 11 Unmodified _WRRKRRWRGLW_ 0 0 0 REV__ENSG00000283093|ENST00000634648|CENPVL2 REV__ENSG00000283093|ENST00000634648|CENPVL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.484619140625 2 828.484551 1654.95455 NaN NaN NaN NaN NaN NaN NaN 28.072 1 28.102 27.602 28.602 0.029564 0 0 0 0.9435 1 14605 14605 0 0 1 + 76196 24372 50845 51948 88853 88853 0.15327031627180077 WRRKRRWRRVR 11 Unmodified _WRRKRRWRRVR_ 0 0 0 ENSG00000223591|ENST00000602548|CENPVL1;ENSG00000283093|ENST00000634648|CENPVL2 ENSG00000223591|ENST00000602548|CENPVL1 ENSG00000223591|ENST00000602548|CENPVL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 856.02880859375 2 856.027449 1710.04034 NaN NaN NaN NaN NaN NaN NaN 100.85 1 100.85 100.35 101.35 0 0 0 0 0.9435 1 55648 55648 0 0 1 76197 10572 50846 51949 88854 88854 0.21372616532676147 WRRKWAYRKLK 11 Unmodified _WRRKWAYRKLK_ 0 0 0 REV__ENSG00000109458|ENST00000262994|GAB1 REV__ENSG00000109458|ENST00000262994|GAB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.6535034179688 3 530.987916 1589.94192 -0.066938 -3.5543E-05 -0.48333 -0.00025664 -0.55027 -0.00029219 530.9875624693769 101 0.13865 100.96 100.92 101.06 -0.04216 6 4 2 0 0 0 0.30605 1 56136 56136 0 0 1 3893600 + 76198 18658 50847 51950 88855 88855 0.1705457544426281 WRRLCLFRQR 10 Unmodified _WRRLCLFRQR_ 0 0 0 REV__ENST00000466292.1_1_3:119033568-119041517:-|nuORF REV__ENST00000466292.1_1_3:119033568-119041517:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2715759277344 3 478.606818 1432.79863 -0.13302 -6.3662E-05 -3.2318 -0.0015467 -3.3648 -0.0016104 478.60500156336275 41.904 0.18257 41.895 41.755 41.937 -0.0088196 12 8 2 0 0 0 0.23946 1 22345 22345 3.5871 2.6615 1 3027100 + 76199 27406 50848 51951 88856 88856 0.0995382506155238 WRRLLEKV 8 Unmodified _WRRLLEKV_ 0 0 0 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 ENSG00000112159|ENST00000369393|MDN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.2296142578125 3 367.229342 1098.6662 0.13063 4.797E-05 -0.54879 -0.00020153 -0.41816 -0.00015356 367.2292387822408 35.971 0.17522 35.971 35.878 36.053 0 14 8 2 0 0 0 0.80831 1 19079 19079 1.6526 0 1 2481200 76200 2865 50849 51952 88857 88857 0.12081123596408361 WRRPCASC 8 Unmodified _WRRPCASC_ 0 0 0 ENST00000416074.6_1_3:9971735-9974750:+|nuORF ENST00000416074.6_1_3:9971735-9974750:+|nuORF ENST00000416074.6_1_3:9971735-9974750:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.7233581542969 2 489.723464 977.432375 NaN NaN NaN NaN NaN NaN NaN 1.3327 1 1.3121 0.81208 1.8121 -0.020623 0 0 0 0.97444 1 692 692 0 0 1 76201 13036 50850 51953 88858 88858 -0.05724419106263667 WRRPRRRPRRK 11 Unmodified _WRRPRRRPRRK_ 0 0 0 REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF REV__ENST00000251102.12_1_16:57965650-57974178:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 810.50634765625 2 810.506349 1618.99815 NaN NaN NaN NaN NaN NaN NaN 83.16 1 83.223 82.723 83.723 0.063171 0 0 0 0.9435 1 46006 46006 0 0 1 + 76202 24882 50851 51954 88859 88859 0.21340641124311333 WRRREEEERWR 11 Unmodified _WRRREEEERWR_ 0 0 0 ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR ENSG00000056097|ENST00000265069|ZFR MSMS AL20221201_MKP_PDAC_01 4 844.432373046875 2 844.429836 1686.84512 NaN NaN NaN NaN NaN NaN NaN 66.904 1 60.728 60.228 61.228 -6.1757 0 0 0 0.9435 1 43548 43548 0 0 1 76203 783 50852 51955 88860 88860 0.029169364265499098 WRRRELWFWWR 11 Unmodified _WRRRELWFWWR_ 0 0 0 ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF ENST00000246635.7_1_17:39661629-39661743:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.97314453125 2 888.970942 1775.92733 NaN NaN NaN NaN NaN NaN NaN 74.644 1 74.644 74.144 75.144 0 0 0 0 0.9435 1 41533 41533 0 0 1 76204 11124 50853 51956 88861 88861 0.07040503296138922 WRRRIRKRKRR 11 Unmodified _WRRRIRKRKRR_ 0 0 0 REV__ENST00000277225.9_3_9:109625513-109685652:+|nuORF REV__ENST00000277225.9_3_9:109625513-109685652:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 834.0421752929688 2 834.043099 1666.07164 NaN NaN NaN NaN NaN NaN NaN 98.513 1 98.32 97.82 98.82 -0.19321 0 0 0 0.9435 1 53798 53798 0 0 1 + 76205 25179 50854 51957 88862 88862 0.26525189566791596 WRRRIRKRKRR 11 Unmodified _WRRRIRKRKRR_ 0 0 0 REV__ENST00000277225.9_3_9:109625513-109685652:+|nuORF REV__ENST00000277225.9_3_9:109625513-109685652:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 833.921630859375 2 834.043099 1666.07164 NaN NaN NaN NaN NaN NaN NaN 101.02 1 100.98 100.48 101.48 -0.04216 0 0 0 0.9435 1 56122 56122 0 0 1 + 76206 25179 50854 51957 88863 88863 0.26525189566791596 WRRRKWPF 8 Unmodified _WRRRKWPF_ 0 0 0 nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 nc|ENSG00000159082|O43426|SYNJ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.2374267578125 3 411.236831 1230.68866 NaN NaN NaN NaN NaN NaN NaN 40.331 1 40.336 39.836 40.836 0.0050545 0 0 0 0.97444 1 21504 21504 1.8442 1.1466 1 76207 16308 50855 51958 88864 88864 0.08254767784683281 WRRRLVHMRRR 11 Unmodified _WRRRLVHMRRR_ 0 0 0 REV__nc|ENSG00000171004|Q96MM7|HS6ST2 REV__nc|ENSG00000171004|Q96MM7|HS6ST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.4806518554688 2 811.481486 1620.94842 NaN NaN NaN NaN NaN NaN NaN 97.866 1 97.848 97.348 98.348 -0.018188 0 0 0 0.9435 1 54372 54372 0 0 1 + 76208 22528 50856 51959 88865 88865 0.16278190124012326 WRRRRKMRRR 10 Unmodified _WRRRRKMRRR_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 778.9737548828125 2 778.973828 1555.9331 NaN NaN NaN NaN NaN NaN NaN 109.85 1 109.8 109.3 110.3 -0.047607 0 0 0 1.0061 1 60803 60803 0 0 1 + 76209 24931 50857 51960 88866 88866 0.17737323326809928 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.49462890625 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 104.57 1 98.394 97.894 98.894 -6.1757 0 0 0 0.9435 1 70022 70022 0 0 1 + 76210 24931 50858 51961 88867 88867 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4956665039062 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 106.42 1 100.24 99.743 100.74 -6.1757 0 0 0 0.9435 1 71235 71235 0 0 1 + 76211 24931 50858 51961 88868 88868 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4952392578125 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 106.59 1 100.42 99.917 100.92 -6.1757 0 0 0 0.9435 1 71343 71343 0 0 1 + 76212 24931 50858 51961 88869 88869 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4956665039062 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 106.77 1 100.6 100.1 101.1 -6.1757 0 0 0 0.9435 1 71455 71455 0 0 1 + 76213 24931 50858 51961 88870 88870 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4966430664062 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 107 1 100.82 100.32 101.32 -6.1757 0 0 0 0.9435 1 71595 71595 0 0 1 + 76214 24931 50858 51961 88871 88871 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4974975585938 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 107.17 1 101 100.5 101.5 -6.1757 0 0 0 0.9435 1 71701 71701 0 0 1 + 76215 24931 50858 51961 88872 88872 0.16060673664401293 WRRRRKMRRRE 11 Unmodified _WRRRRKMRRRE_ 0 0 0 REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF REV__ENST00000257749.8_2_6:90661229-90661412:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 843.4959106445312 2 843.495124 1684.9757 NaN NaN NaN NaN NaN NaN NaN 107.48 1 101.3 100.8 101.8 -6.1757 0 0 0 0.9435 1 71882 71882 0 0 1 + 76216 24931 50858 51961 88873 88873 0.16060673664401293 WRRRRKVGDRG 11 Unmodified _WRRRRKVGDRG_ 0 0 0 REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF REV__ENST00000181839.8_1_7:39989715-39990237:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2842407226562 3 481.283503 1440.82868 2.2172 0.0010671 -0.16074 -7.736E-05 2.0565 0.00098975 481.2830218261294 95.485 1.0883 95.489 94.888 95.977 0.004158 84 40 3 0 0 0 0.7453 3 52874 52874;52978;53079 0 0 1 1997000 + 76217 24721 50859 51962 88874;88875;88876 88874 0.12589900051079894 WRRRRRMRRMK 11 Unmodified _WRRRRRMRRMK_ 0 0 0 REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF REV__ENST00000281708.8_1_4:153271275-153332654:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 844.4938354492188 2 844.49407 1686.97359 NaN NaN NaN NaN NaN NaN NaN 93.485 1 93.508 93.008 94.008 0.022987 0 0 0 0.9435 1 51974 51974 0 0 1 + 76218 25200 50860 51963 88877 88877 0.1575792165490384 WRRRRRPWQGR 11 Unmodified _WRRRRRPWQGR_ 0 0 0 ENST00000535818.1_1_11:60906157-60928919:-|nuORF;ENST00000536000.1_1_11:60900588-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF ENST00000535818.1_1_11:60906157-60928919:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.486572265625 4 403.234442 1608.90866 -0.27351 -0.00011029 0.56271 0.0002269 0.2892 0.00011661 403.48658322513353 71.546 0.19366 71.546 71.505 71.699 0 9 7 2 0 0 0 0.7453 1 39871 39871 0 0 1 242860 76219 14977 50861 51964 88878 88878 0.1285638644494611 WRRRRRRAL 9 Unmodified _WRRRRRRAL_ 0 0 0 ENST00000400913.5_1_1:6535562-6545948:-|nuORF;ENST00000537245.5_1_1:6535562-6556614:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.4171142578125 2 663.416137 1324.81772 NaN NaN NaN NaN NaN NaN NaN 78.312 1 77.826 77.326 78.326 -0.48596 0 0 0 0.8622 1 42891 42891 0 0 1 76220 12879 50862 51965 88879 88879 0.16830542467505438 WRRRRRRPRRR 11 Unmodified _WRRRRRRPRRR_ 0 0 0 ENST00000453677.1_1_7:104654330-104654752:-|nuORF ENST00000453677.1_1_7:104654330-104654752:-|nuORF ENST00000453677.1_1_7:104654330-104654752:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.03076171875 2 854.033597 1706.05264 NaN NaN NaN NaN NaN NaN NaN 35.683 1 35.708 35.208 36.208 0.024967 0 0 0 0.9435 1 18877 18877 0 0 1 76221 13561 50863 51966 88880 88880 0.22785652995730743 WRRRRRTQRKT 11 Unmodified _WRRRRRTQRKT_ 0 0 0 REV__ENST00000356865.10_1_15:25962031-25966812:-|nuORF REV__ENST00000356865.10_1_15:25962031-25966812:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 800.4796142578125 2 800.479997 1598.94544 NaN NaN NaN NaN NaN NaN NaN 74.58 1 74.104 73.604 74.604 -0.47588 0 0 0 0.9435 1 40819 40819 0 0 1 + 76222 25832 50864 51967 88881 88881 0.16992638270835414 WRRRRWKRKRR 11 Unmodified _WRRRRWKRKRR_ 0 0 0 ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 870.5401000976562 2 870.540723 1739.06689 NaN NaN NaN NaN NaN NaN NaN 79.284 1 79.339 78.839 79.839 0.05497 0 0 0 0.9435 1 43804 43804 0 0 1 76223 11226 50865 51968 88882 88882 0.22692305424016013 WRRRRWKRKRR 11 Unmodified _WRRRRWKRKRR_ 0 0 0 ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 870.5376586914062 2 870.540723 1739.06689 NaN NaN NaN NaN NaN NaN NaN 107.46 1 107.41 106.91 107.91 -0.047607 0 0 0 0.9435 1 59535 59535 0 0 1 76224 11226 50865 51968 88883 88883 0.22692305424016013 WRRRRWKRKRR 11 Unmodified _WRRRRWKRKRR_ 0 0 0 ENST00000557821.5_1_15:40588574-40589003:-|nuORF;ENST00000260402.7_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF ENST00000557821.5_1_15:40588574-40589003:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 870.5399169921875 2 870.540723 1739.06689 NaN NaN NaN NaN NaN NaN NaN 83.181 1 77.006 76.506 77.506 -6.1757 0 0 0 0.9435 1 54691 54691 0 0 1 76225 11226 50865 51968 88884 88884 0.22692305424016013 WRRRWRPDVHR 11 Unmodified _WRRRWRPDVHR_ 0 0 0 REV__ENST00000398022.6_1_20:30697511-30720852:+|nuORF REV__ENST00000398022.6_1_20:30697511-30720852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 810.4489135742188 2 810.448166 1618.88178 NaN NaN NaN NaN NaN NaN NaN 54.698 1 54.231 53.731 54.731 -0.46664 0 0 0 0.9435 1 29648 29648 0 0 1 + 76226 26553 50866 51969 88885 88885 0.09709277833758279 WRRSMWRWRTR 11 Unmodified _WRRSMWRWRTR_ 0 0 0 ENST00000330978.3_1_16:29465045-29465621:-|nuORF;ENST00000568556.1_3_16:29458291-29465582:-|nuORF ENST00000330978.3_1_16:29465045-29465621:-|nuORF ENST00000330978.3_1_16:29465045-29465621:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 838.9425048828125 2 838.944402 1675.87425 NaN NaN NaN NaN NaN NaN NaN 96.425 1 96.418 95.918 96.918 -0.007019 0 0 0 0.9435 1 53554 53554 0 0 1 76227 11857 50867 51970 88886 88886 0.06334802241804027 WRRSTRQFT 9 Unmodified _WRRSTRQFT_ 0 0 0 REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13 REV__nc|ENSG00000133121|Q9Y3M8-3|STARD13 MSMS AL20221201_MKP_PDAC_01 4 413.2237854003906 3 413.223139 1236.64759 NaN NaN NaN NaN NaN NaN NaN 17.08 1 14.494 13.994 14.994 -2.5866 0 0 0 0.84737 1 8901 8901 0.96228 0 1 + 76228 19911 50868 51971 88887 88887 0.03872961954562015 WRRSWSVTF 9 Unmodified _WRRSWSVTF_ 0 0 0 ENST00000580163.5_1_17:25783856-25877639:+|nuORF ENST00000580163.5_1_17:25783856-25877639:+|nuORF ENST00000580163.5_1_17:25783856-25877639:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.8174438476562 2 612.817264 1223.61998 0.98338 0.00060263 -0.93636 -0.00057382 0.047015 2.8811E-05 612.8166806963426 63.632 0.82209 57.456 57 57.822 -6.1757 125 46 4 0 0 0 0.39863 1 40981 40981 12.532 0.89125 1 99698000 76229 15557 50869 51972 88888 88888 0.01711058694309031 WRRVGNGVGQF 11 Unmodified _WRRVGNGVGQF_ 0 0 0 REV__nc|ENSG00000174611|Q8NBH2-3|KY REV__nc|ENSG00000174611|Q8NBH2-3|KY MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5637512207031 3 425.895022 1274.66324 1.2671 0.00053964 -1.1256 -0.0004794 0.14144 6.0237E-05 425.8945264529531 36.963 0.43605 32.68 32.455 32.891 -4.2835 78 26 4 0 0 0 0.65108 1 21520 21520 4.4062 0 1 31918000 + 76230 22804 50870 51973 88889 88889 0.03689248471596329 WRRVLYQPKFW 11 Unmodified _WRRVLYQPKFW_ 0 0 0 ENSG00000127585|ENST00000397621|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 ENSG00000127585|ENST00000397621|FBXL16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 789.9387817382812 2 789.938245 1577.86194 0.36644 0.00028946 -0.8441 -0.00066678 -0.47766 -0.00037732 790.4388683281578 88.753 0.24338 88.801 88.675 88.919 0.047859 16 9 2 0 0 0 0.74157 1 49360 49360 0.35063 0.043601 1 34279000 76231 4020 50871 51974 88890 88890 0.09612089050415307 WRRVPQGV 8 Unmodified _WRRVPQGV_ 0 0 0 REV__ENSG00000184956|ENST00000421673|MUC6 REV__ENSG00000184956|ENST00000421673|MUC6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.2262268066406 2 499.288143 996.561733 NaN NaN NaN NaN NaN NaN NaN 103.99 1 103.94 103.44 104.44 -0.048737 0 0 0 0.97444 1 57742 57742 0.69038 0 1 + 76232 23455 50872 51975 88891 88891 0.06331421839706763 WRRVRKHYRWN 11 Unmodified _WRRVRKHYRWN_ 0 0 0 ENST00000396757.5_1_9:35615990-35616170:-|nuORF ENST00000396757.5_1_9:35615990-35616170:-|nuORF ENST00000396757.5_1_9:35615990-35616170:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 828.9591674804688 2 828.958366 1655.90218 NaN NaN NaN NaN NaN NaN NaN 18.524 1 18.524 18.024 19.024 0 0 0 0 0.9435 1 9216 9216 0 0 1 76233 12804 50873 51976 88892 88892 0.10046448493608295 WRRVSSRRRL 10 Unmodified _WRRVSSRRRL_ 0 0 0 ENST00000380384.5_1_9:19379871-19380177:-|nuORF ENST00000380384.5_1_9:19379871-19380177:-|nuORF ENST00000380384.5_1_9:19379871-19380177:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 686.4135131835938 2 686.41326 1370.81197 NaN NaN NaN NaN NaN NaN NaN 108.43 1 108.38 107.88 108.88 -0.047607 0 0 0 1.0061 1 60050 60050 0 0 1 76234 12596 50874 51977 88893 88893 0.14139399165173927 WRRWCWRWPW 10 Unmodified _WRRWCWRWPW_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.39599609375 2 809.393482 1616.77241 -0.0053809 -4.3552E-06 1.0667 0.00086339 1.0613 0.00085904 809.3943788296915 88.433 0.28961 88.433 88.264 88.554 0 46 14 4 0 0 0 0.72247 1 48893 48893 0.40072 0.093686 1 2398600 76235 16176 50875 51978 88894 88894 -0.011304441099355245 WRRWCWRWPW 10 Unmodified _WRRWCWRWPW_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.9317016601562 3 539.931413 1616.77241 NaN NaN NaN NaN NaN NaN NaN 92.153 1 92.153 91.653 92.653 0 0 0 0 1.0061 1 50957 50957 0 0 1 76236 16176 50875 51978 88895 88895 -0.011304441099355245 WRRWCWRWPW 10 Unmodified _WRRWCWRWPW_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.8961181640625 2 809.393482 1616.77241 -0.0036967 -2.9921E-06 -0.056018 -4.5341E-05 -0.059715 -4.8333E-05 809.3934029749086 97.379 0.33044 97.379 97.272 97.602 0 35 14 3 0 0 0 0.24012 1 53914 53914 0 0 1 2688900 76237 16176 50875 51978 88896 88896 -0.011304441099355245 WRRWCWRWPW 10 Unmodified _WRRWCWRWPW_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 809.3935546875 2 809.393482 1616.77241 NaN NaN NaN NaN NaN NaN NaN 92.034 1 91.553 91.053 92.053 -0.48092 0 0 0 1.0061 1 50308 50308 0 0 1 76238 16176 50875 51978 88897 88897 -0.011304441099355245 WRRWCWRWPWR 11 Unmodified _WRRWCWRWPWR_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 887.44482421875 2 887.444037 1772.87352 NaN NaN NaN NaN NaN NaN NaN 107.89 1 107.8 107.3 108.3 -0.087784 0 0 0 0.9435 1 58621 58621 0 0 1 76239 16176 50876 51979 88898 88898 0.018000075927602666 WRRWCWRWPWR 11 Unmodified _WRRWCWRWPWR_ 0 0 0 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 nc|ENSG00000127252|Q9HDD0-2|PLAAT1 MSMS AL20221201_MKP_PDAC_01 4 887.4474487304688 2 887.444037 1772.87352 NaN NaN NaN NaN NaN NaN NaN 41.275 1 36.667 36.167 37.167 -4.6079 0 0 0 0.9435 1 24764 24764 0 0 1 76240 16176 50876 51979 88899 88899 0.018000075927602666 WRRWHWVWLLR 11 Unmodified _WRRWHWVWLLR_ 0 0 0 REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF REV__ENST00000233202.10_1_2:219261288-219261426:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 847.4710083007812 2 847.470578 1692.9266 NaN NaN NaN NaN NaN NaN NaN 27.939 1 27.969 27.469 28.469 0.029564 0 0 0 0.9435 1 14534 14534 0 0 1 + 76241 24820 50877 51980 88900 88900 0.10785708647085812 WRRWNRFNRRR 11 Unmodified _WRRWNRFNRRR_ 0 0 0 nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8401489257812 3 568.317318 1701.93013 0.85957 0.00048851 0.82486 0.00046878 1.6844 0.00095729 568.3183134725141 49.49 0.22272 49.441 49.29 49.512 -0.048824 19 10 3 0 0 0 0.30604 1 26708 26708 0.08335 0 1 2135700 76242 6514 50878 51981 88901 88901 0.10723771473658417 WRRWRKRRITR 11 Unmodified _WRRWRKRRITR_ 0 0 0 REV__ENST00000399933.7_1_9:6007594-6007651:-|nuORF REV__ENST00000399933.7_1_9:6007594-6007651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 835.5116577148438 2 835.508558 1669.00256 NaN NaN NaN NaN NaN NaN NaN 108.52 1 108.47 107.97 108.97 -0.047607 0 0 0 0.9435 1 60098 60098 0 0 1 + 76243 26590 50879 51982 88902 88902 0.1948210554724028 WRRWRKRWRRR 11 Unmodified _WRRWRKRWRRR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 899.5289306640625 2 899.532898 1797.05124 NaN NaN NaN NaN NaN NaN NaN 68.562 1 68.562 68.062 69.062 0 0 0 0 0.9435 1 38216 38216 0 0 1 + 76244 24983 50880 51983 88903 88903 0.1846001890696698 WRRWWLWTPQL 11 Unmodified _WRRWWLWTPQL_ 0 0 0 ENST00000308064.6_1_11:45673544-45686758:-|nuORF;ENST00000531322.1_1_11:45673541-45686758:-|nuORF ENST00000308064.6_1_11:45673544-45686758:-|nuORF ENST00000308064.6_1_11:45673544-45686758:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 814.4361572265625 2 814.43587 1626.85719 NaN NaN NaN NaN NaN NaN NaN 84.614 1 84.114 83.614 84.614 -0.49961 0 0 0 0.9435 1 46302 46302 0 0 1 76245 11649 50881 51984 88904 88904 0.06883204907671825 WRRWWWRRRRR 11 Unmodified _WRRWWWRRRRR_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5239868164062 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 52.076 1 51.642 51.142 52.142 -0.43367 0 0 0 0.9435 1 28113 28113 0 0 1 76246 12348 50882 51985 88905 88905 0.14227732389917946 WRRWWWRRRRR 11 Unmodified _WRRWWWRRRRR_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.5244140625 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 97.919 1 97.677 97.177 98.177 -0.24277 0 0 0 0.9435 1 53480 53480 0 0 1 76247 12348 50882 51985 88906 88906 0.14227732389917946 WRRWWWRRRRR 11 Unmodified _WRRWWWRRRRR_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 928.5248413085938 2 928.525073 1855.03559 NaN NaN NaN NaN NaN NaN NaN 57.315 1 51.288 50.788 51.788 -6.0275 0 0 0 0.9435 1 36653 36653 0 0 1 76248 12348 50882 51985 88907 88907 0.14227732389917946 WRSGAPGK 8 Unmodified _WRSGAPGK_ 0 0 0 REV__nc|ENSG00000142655|O75381-2|PEX14 REV__nc|ENSG00000142655|O75381-2|PEX14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 429.7328796386719 2 429.732669 857.450785 0.31749 0.00013644 0.87531 0.00037615 1.1928 0.00051259 429.7329609087934 59.452 0.34191 59.452 59.285 59.627 0 27 14 2 0 0 0 0.80722 1 33079 33079 2.3027 1.5091 1 4026200 + 76249 29673 50883 51986 88908 88908 0.016357821316205445 WRSLPLLPV 9 Unmodified _WRSLPLLPV_ 0 0 0 ENST00000402802.7_1_7:536981-537197:-|nuORF ENST00000402802.7_1_7:536981-537197:-|nuORF ENST00000402802.7_1_7:536981-537197:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.831787109375 2 540.831852 1079.64915 0.48758 0.0002637 -0.57329 -0.00031005 -0.08571 -4.6355E-05 540.8314908560405 80.67 0.54351 80.727 80.518 81.062 0.057587 72 21 5 0 0 0 0.4887 1 44633 44633 8.1555 8.1555 1 149940000 76250 12896 50884 51987 88909 88909 0.11251202990615639 WRSLPLLPV 9 Unmodified _WRSLPLLPV_ 0 0 0 ENST00000402802.7_1_7:536981-537197:-|nuORF ENST00000402802.7_1_7:536981-537197:-|nuORF ENST00000402802.7_1_7:536981-537197:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8325805664062 2 540.831852 1079.64915 1.149 0.00062141 -0.7244 -0.00039178 0.42459 0.00022963 540.8312581443997 97.757 0.37877 91.581 91.421 91.8 -6.1757 92 24 5 0 0 0 0.40476 1 64873 64873 12.241 2.8575 1 951830000 76251 12896 50884 51987 88910 88910 0.11251202990615639 WRSLWIRF 8 Unmodified _WRSLWIRF_ 0 0 0 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5536499023438 3 388.553937 1162.63998 0.0087941 3.417E-06 0.16373 6.3617E-05 0.17252 6.7034E-05 388.55368535982365 18.975 0.29734 18.981 18.802 19.099 0.0060482 37 15 3 0 0 0 0.80624 1 9678 9678 1.8442 0 1 2389400 76252 5915 50885 51988 88911 88911 0.0651685442494454 WRSRMRRQFFR 11 Unmodified _WRSRMRRQFFR_ 0 0 0 ENST00000382214.7_1_20:388725-389346:+|nuORF ENST00000382214.7_1_20:388725-389346:+|nuORF ENST00000382214.7_1_20:388725-389346:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 813.4395751953125 2 813.438952 1624.86335 NaN NaN NaN NaN NaN NaN NaN 91.929 1 91.959 91.459 92.459 0.030197 0 0 0 0.9435 1 51126 51126 0 0 1 76253 12626 50886 51989 88912 88912 0.07591399867555992 WRSWICPLMV 10 Unmodified _WRSWICPLMV_ 0 0 0 ENST00000591263.5_1_17:43325341-43344591:+|nuORF;ENST00000588160.1_1_17:43332391-43344591:+|nuORF;ENST00000592422.5_1_17:43325341-43344591:+|nuORF ENST00000591263.5_1_17:43325341-43344591:+|nuORF ENST00000591263.5_1_17:43325341-43344591:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8883056640625 3 430.887711 1289.6413 NaN NaN NaN NaN NaN NaN NaN 105.96 1 99.785 99.285 100.28 -6.1757 0 0 0 1.0019 1 70957 70957 0.15932 0 1 76254 15645 50887 51990 88913 88913 0.00806984407154232 WRTKRWWLWR 10 Unmodified _WRTKRWWLWR_ 0 0 0 REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2925415039062 3 525.293228 1572.85786 -0.65471 -0.00034391 0.44354 0.00023299 -0.21117 -0.00011092 525.2932180880632 18.052 0.049168 18.066 18.049 18.099 0.013866 12 8 2 0 0 0 0.72607 1 9027 9027 0 0 1 1011500 + 76255 26603 50888 51991 88914 88914 0.09434044347381132 WRTKRWWLWR 10 Unmodified _WRTKRWWLWR_ 0 0 0 REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 525.293228 1572.85786 -0.65471 -0.00034391 0.44354 0.00023299 -0.21117 -0.00011092 525.2932180880632 18.052 0.049168 18.066 18.049 18.099 0.013866 0 0 NaN 0 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1011500 + 76256 26603 50888 51991 0.09434044347381132 WRTRTIRRKRW 11 Unmodified _WRTRTIRRKRW_ 0 0 0 ENST00000399933.7_1_9:6007594-6007651:-|nuORF ENST00000399933.7_1_9:6007594-6007651:-|nuORF ENST00000399933.7_1_9:6007594-6007651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 807.9828491210938 2 807.981841 1613.94913 NaN NaN NaN NaN NaN NaN NaN 91.83 1 91.86 91.36 92.36 0.030197 0 0 0 0.9435 1 51072 51072 0 0 1 76257 12868 50889 51992 88915 88915 0.1667130804471526 WRTRYKTI 8 Unmodified _WRTRYKTI_ 0 0 0 ENSG00000152034|ENST00000281806|MCHR2 ENSG00000152034|ENST00000281806|MCHR2 ENSG00000152034|ENST00000281806|MCHR2 MSMS AL20221201_MKP_PDAC_01 4 375.2183532714844 3 375.217214 1122.62981 NaN NaN NaN NaN NaN NaN NaN 104.66 1 98.48 97.98 98.98 -6.1757 0 0 0 0.97444 1 70072 70072 1.6526 0.58116 1 76258 6159 50890 51993 88916 88916 0.07340246699709496 WRVGVSAVF 9 Unmodified _WRVGVSAVF_ 0 0 0 REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 REV__nc|ENSG00000026652|Q9NRZ5-2|AGPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.78125 2 510.784902 1019.55525 0.41139 0.00021013 -1.385 -0.00070742 -0.97358 -0.00049729 510.78088816499695 50.615 0.33523 50.615 50.369 50.704 0 27 15 3 0 0 0 0.34999 1 27941 27941 14.838 0.25658 1 1991400 + 76259 17129 50891 51994 88917 88917 0.046254838883328375 WRVRLDERN 9 Unmodified _WRVRLDERN_ 0 0 0 REV__nc|ENSG00000116774|Q9NRN5-3|OLFML3 REV__nc|ENSG00000116774|Q9NRN5-3|OLFML3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3365478515625 2 622.336353 1242.65815 0.40802 0.00025392 1.4053 0.00087455 1.8133 0.0011285 622.3368487881403 90.943 0.2818 90.449 90.304 90.586 -0.49457 32 20 2 0 0 0 0.51371 1 49692 49692 10.074 4.3421 1 1340100 + 76260 29589 50892 51995 88918 88918 0.046529446090062265 WRWDCDMLYEE 11 Unmodified _WRWDCDMLYEE_ 0 0 0 REV__nc|ENSG00000168016|O15050|TRANK1 REV__nc|ENSG00000168016|O15050|TRANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 773.3096923828125 2 773.310494 1544.60644 NaN NaN NaN NaN NaN NaN NaN 45.756 1 45.728 45.228 46.228 -0.028011 0 0 0 0.9435 1 24594 24594 0 0 1 + 76261 22279 50893 51996 88919 88919 -0.14408347982066516 WRWDRDRYYYL 11 Unmodified _WRWDRDRYYYL_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MSMS AL20221201_MKP_PDAC_01 4 846.4078369140625 2 846.407506 1690.80046 NaN NaN NaN NaN NaN NaN NaN 41.304 1 36.696 36.196 37.196 -4.6079 0 0 0 0.9435 1 24787 24787 0 0 1 + 76262 24477 50894 51997 88920 88920 -0.017308874394757368 WRWLTFWRRLQ 11 Unmodified _WRWLTFWRRLQ_ 0 0 0 nc|ENSG00000164284|Q8TAA5-2|GRPEL2 nc|ENSG00000164284|Q8TAA5-2|GRPEL2 nc|ENSG00000164284|Q8TAA5-2|GRPEL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 824.4513549804688 2 824.454594 1646.89463 NaN NaN NaN NaN NaN NaN NaN 65.678 1 65.194 64.694 65.694 -0.48428 0 0 0 0.9435 1 35853 35853 0 0 1 76263 16338 50895 51998 88921 88921 0.09706296173271767 WRWREWRPWVT 11 Unmodified _WRWREWRPWVT_ 0 0 0 ENST00000589087.5_1_19:2806818-2807876:+|nuORF ENST00000589087.5_1_19:2806818-2807876:+|nuORF ENST00000589087.5_1_19:2806818-2807876:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 829.4270629882812 2 829.428576 1656.8426 NaN NaN NaN NaN NaN NaN NaN 103.3 1 103.25 102.75 103.75 -0.047928 0 0 0 0.9435 1 57366 57366 0 0 1 76264 15659 50896 51999 88922 88922 0.04045132759506487 WRWRRWRKRWR 11 Unmodified _WRWRRWRKRWR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 914.5211791992188 2 914.521999 1827.02945 NaN NaN NaN NaN NaN NaN NaN 84.003 1 84.066 83.566 84.566 0.063171 0 0 0 0.9435 1 46476 46476 0 0 1 + 76265 24983 50897 52000 88923 88923 0.149012141583853 WRWRRWRKRWR 11 Unmodified _WRWRRWRKRWR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 914.5189208984375 2 914.521999 1827.02945 NaN NaN NaN NaN NaN NaN NaN 69.112 1 62.937 62.437 63.437 -6.1757 0 0 0 0.9435 1 45126 45126 0 0 1 + 76266 24983 50897 52000 88924 88924 0.149012141583853 WRWRRWRKRWR 11 Unmodified _WRWRRWRKRWR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 914.3701171875 2 914.521999 1827.02945 NaN NaN NaN NaN NaN NaN NaN 75.214 1 69.038 68.538 69.538 -6.1757 0 0 0 0.9435 1 49185 49185 0 0 1 + 76267 24983 50897 52000 88925 88925 0.149012141583853 WRWRRWRKRWR 11 Unmodified _WRWRRWRKRWR_ 0 0 0 REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF REV__ENST00000261427.9_1_4:39699814-39699901:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 914.5200805664062 2 914.521999 1827.02945 NaN NaN NaN NaN NaN NaN NaN 85.081 1 78.905 78.405 79.405 -6.1757 0 0 0 0.9435 1 56011 56011 0 0 1 + 76268 24983 50897 52000 88926 88926 0.149012141583853 WRWRWRRWRR 10 Unmodified _WRWRWRRWRR_ 0 0 0 ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF ENST00000253814.5_1_5:141488387-141511833:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 850.4782104492188 2 850.474518 1698.93448 NaN NaN NaN NaN NaN NaN NaN 40.429 1 35.9 35.4 36.4 -4.5294 0 0 0 1.0047 1 24140 24140 0 0 1 76269 11159 50898 52001 88927 88927 0.11297280687222155 WRWSGCRW 8 Unmodified _WRWSGCRW_ 0 0 0 ENST00000343075.7_1_12:109526123-109527829:-|nuORF;nc|ENSG00000189046|Q6NS38-2|ALKBH2 ENST00000343075.7_1_12:109526123-109527829:-|nuORF ENST00000343075.7_1_12:109526123-109527829:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7640991210938 2 568.763978 1135.5134 NaN NaN NaN NaN NaN NaN NaN 6.8961 1 6.8114 6.3114 7.3114 -0.08463 0 0 0 0.97444 1 3396 3396 0 0 1 76270 11997 50899 52002 88928 88928 -0.048933950718264896 WRWWEHRLLWI 11 Unmodified _WRWWEHRLLWI_ 0 0 0 ENST00000564785.5_1_15:75650962-75651301:-|nuORF;ENST00000563368.5_1_15:75650962-75652298:-|nuORF ENST00000564785.5_1_15:75650962-75651301:-|nuORF ENST00000564785.5_1_15:75650962-75651301:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 840.9478759765625 2 840.949144 1679.88374 NaN NaN NaN NaN NaN NaN NaN 97.624 1 91.449 90.949 91.949 -6.1757 0 0 0 0.94307 1 64693 64693 0.30703 0.30703 1 76271 15363 50900 52003 88929 88929 0.07098893799025063 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.4449462890625 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 77.458 1 77.458 76.958 77.958 0 0 0 0 0.9435 1 43059 43059 0 0 1 + 76272 28896 50901 52004 88930 88930 0.061070634648785926 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 848.4468383789062 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 104.38 1 104.28 103.78 104.78 -0.096809 0 0 0 0.9435 1 56868 56868 0 0 1 + 76273 28896 50901 52004 88931 88931 0.061070634648785926 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 848.4459228515625 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 66.053 1 59.877 59.377 60.377 -6.1757 0 0 0 0.9435 1 42930 42930 0 0 1 + 76274 28896 50901 52004 88932 88932 0.061070634648785926 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 848.4544067382812 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 85.411 1 79.235 78.735 79.735 -6.1757 0 0 0 0.9435 1 56251 56251 0 0 1 + 76275 28896 50901 52004 88933 88933 0.061070634648785926 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 848.4509887695312 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 85.598 1 79.422 78.922 79.922 -6.1757 0 0 0 0.9435 1 56387 56387 0 0 1 + 76276 28896 50901 52004 88934 88934 0.061070634648785926 WRWWRRPNWPR 11 Unmodified _WRWWRRPNWPR_ 0 0 0 REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF REV__ENST00000564348.5_1_19:7982609-7983760:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 848.4496459960938 2 848.447634 1694.88072 NaN NaN NaN NaN NaN NaN NaN 104.56 1 98.379 97.879 98.879 -6.1757 0 0 0 0.9435 1 70014 70014 0 0 1 + 76277 28896 50901 52004 88935 88935 0.061070634648785926 WRYDERRQ 8 Unmodified _WRYDERRQ_ 0 0 0 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.5355224609375 3 403.535494 1207.58465 NaN NaN NaN NaN NaN NaN NaN 17.934 1 17.934 17.434 18.434 0 0 0 0 0.97444 1 8880 8880 0.35063 0 1 76278 10848 50902 52005 88936 88936 -0.010836038334900877 WSAAAALD 8 Unmodified _WSAAAALD_ 0 0 0 ENST00000562968.1_1_16:27356645-27356831:+|nuORF ENST00000562968.1_1_16:27356645-27356831:+|nuORF ENST00000562968.1_1_16:27356645-27356831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 806.389892578125 1 804.388645 803.381368 0.21421 0.00017231 -0.20293 -0.00016324 0.011279 9.0729E-06 804.3892096718257 60.941 0.23244 60.941 60.863 61.095 0 21 9 3 0 0 0 0.81107 1 34018 34018 0 0 1 1334100 76279 15350 50903 52006 88937 88937 -0.028187216078322308 WSADSPAQ 8 Unmodified _WSADSPAQ_ 0 0 0 ENST00000315293.6_2_9:67019055-67031582:-|nuORF ENST00000315293.6_2_9:67019055-67031582:-|nuORF ENST00000315293.6_2_9:67019055-67031582:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 863.3836669921875 1 861.373723 860.366446 1.3873 0.001195 0.24427 0.00021041 1.6316 0.0014054 861.3735237156212 104.76 0.0998 98.587 98.538 98.638 -6.1757 26 12 3 0 0 0 0.80383 1 70143 70143 4.3292 4.3292 1 9668400 76280 11730 50904 52007 88938 88938 -0.06932213475818116 WSAGAAWA 8 Unmodified _WSAGAAWA_ 0 0 0 ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 819.379150390625 1 819.378414 818.371138 0.035182 2.8827E-05 -0.78745 -0.00064522 -0.75227 -0.00061639 819.3777494574074 39.588 0.27581 39.588 39.424 39.7 0 24 12 3 0 0 0 0.5953 1 21184 21184 26.341 0 1 4576200 76281 11178 50905 52008 88939 88939 -0.04531284542395042 WSAGAAWA 8 Unmodified _WSAGAAWA_ 0 0 0 ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 819.3790893554688 1 819.378414 818.371138 -0.31731 -0.00026 0.59466 0.00048725 0.27735 0.00022725 819.3789719999959 39.878 0.25917 39.581 39.431 39.69 -0.29716 18 12 2 0 0 0 0.5284 1 21045 21045 32.117 5.7757 1 3229800 76282 11178 50905 52008 88940 88940 -0.04531284542395042 WSAGAAWA 8 Unmodified _WSAGAAWA_ 0 0 0 ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF ENST00000256196.8_1_11:14317388-14380436:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 819.378173828125 1 819.378414 818.371138 0.76498 0.00062681 -0.46313 -0.00037948 0.30185 0.00024733 819.3777607746822 44.291 0.38317 39.439 39.249 39.632 -4.852 50 27 2 0 0 0 0.5284 1 27063 27063 32.117 5.7757 1 22479000 76283 11178 50905 52008 88941 88941 -0.04531284542395042 WSANTEGP 8 Unmodified _WSANTEGP_ 0 0 0 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 861.3749389648438 1 861.373723 860.366446 1.3873 0.001195 0.24427 0.00021041 1.6316 0.0014054 861.3735237156212 104.76 0.0998 98.587 98.538 98.638 -6.1757 26 12 3 0 0 0 0.79669 1 70127 70127 8.5933 0 1 9668400 + 76284 20033 50906 52009 88942 88942 -0.06932213475806748 WSAPYLVRDGF 11 Unmodified _WSAPYLVRDGF_ 0 0 0 REV__ENSG00000021488|ENST00000023064|SLC7A9 REV__ENSG00000021488|ENST00000023064|SLC7A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.8898620605469 3 437.555784 1309.64552 -0.28317 -0.0001239 0.73454 0.0003214 0.45136 0.0001975 437.55628376391496 33.714 0.26425 33.555 33.436 33.7 -0.15918 18 10 3 0 0 0 0.71036 1 17606 17606 1.3296 0 1 1449700 + 76285 17109 50907 52010 88943 88943 0.003084884260488252 WSAQKIKQ 8 Unmodified _WSAQKIKQ_ 0 0 0 ENST00000485057.5_1_2:73247283-73302735:-|nuORF;ENST00000461352.5_1_2:73172212-73286292:-|nuORF;ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000474528.5_1_2:73172153-73286292:-|nuORF;ENST00000450185.5_1_2:73228706-73298794:-|nuORF ENST00000485057.5_1_2:73247283-73302735:-|nuORF ENST00000485057.5_1_2:73247283-73302735:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7802734375 2 494.782359 987.550165 NaN NaN NaN NaN NaN NaN NaN 86.885 1 86.885 86.385 87.385 0 0 0 0 0.97444 1 48119 48119 0.69038 0 1 76286 5579 50908 52011 88944 88944 0.0558918002569726 WSARGPVG 8 Unmodified _WSARGPVG_ 0 0 0 REV__ENSG00000282936|ENST00000634965|unknown REV__ENSG00000282936|ENST00000634965|unknown MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.2203063964844 2 415.219395 828.424236 0.73576 0.0003055 1.4312 0.00059428 2.167 0.00089978 415.21993808690075 46.329 0.58909 46.296 45.921 46.51 -0.033417 42 27 2 0 0 0 0.80676 1 24948 24948 2.5775 0 1 74381000 + 76287 24687 50909 52012 88945 88945 0.00316093240292048 WSAVFECNHY 10 Unmodified _WSAVFECNHY_ 0 0 0 REV__ENSG00000100036|ENST00000343605|SLC35E4 REV__ENSG00000100036|ENST00000343605|SLC35E4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.1595764160156 3 419.178207 1254.51279 0.40427 0.00016946 2.2185 0.00092993 2.6227 0.0010994 419.17928762254996 38.752 0.23819 38.752 38.62 38.858 0 22 10 3 0 0 0 0.23862 1 20692 20692 1.9064 0 1 1442200 + 76288 18006 50910 52013 88946 88946 -0.10428279302209376 WSCDMNSPY 9 Unmodified _WSCDMNSPY_ 0 0 0 REV__ENSG00000121904|ENST00000373381|CSMD2 REV__ENSG00000121904|ENST00000373381|CSMD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.701904296875 2 551.70206 1101.38957 0.068729 3.7918E-05 -1.454 -0.0008022 -1.3853 -0.00076428 552.2033694048922 55.22 0.21217 55.22 55.029 55.241 0 12 8 2 0 0 0 0.54444 1 30635 30635 4.756 1.8668 1 1407700 + 76289 19319 50911 52014 88947 88947 -0.1570727874500335 WSCFSWSY 8 Unmodified _WSCFSWSY_ 0 0 0 REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF REV__ENST00000312814.10_1_7:112424554-112424737:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.20947265625 2 533.210378 1064.4062 0.8762 0.0004672 -1.9454 -0.0010373 -1.0692 -0.00057012 533.2092344320433 74.06 0.43147 67.884 67.684 68.116 -6.1757 34 21 2 0 0 0 0.78849 1 48413 48413 9.3474 0.75416 1 14182000 + 76290 25434 50912 52015 88948 88948 -0.12342409796747233 WSCGCVHWC 9 Unmodified _WSCGCVHWC_ 0 0 0 REV__ENST00000450136.1_1_9:119461748-119461784:+|nuORF REV__ENST00000450136.1_1_9:119461748-119461784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.696044921875 2 540.696057 1079.37756 NaN NaN NaN NaN NaN NaN NaN 11.276 1 8.7941 8.2941 9.2941 -2.482 0 0 0 0.8622 1 5674 5674 0 0 1 + 76291 27197 50913 52016 88949 88949 -0.1589517396919291 WSCSCGASDQE 11 Unmodified _WSCSCGASDQE_ 0 0 0 ENST00000553571.5_1_20:1435621-1453436:-|nuORF ENST00000553571.5_1_20:1435621-1453436:-|nuORF ENST00000553571.5_1_20:1435621-1453436:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.701171875 2 586.702788 1171.39102 0.87274 0.00051204 -1.6232 -0.00095232 -0.75044 -0.00044028 586.7014585116044 79.955 0.42973 79.465 79.377 79.807 -0.48932 33 16 3 0 0 0 0.73992 1 43823 43823 0 0 1 897980 76292 15191 50914 52017 88950 88950 -0.18781689446905148 WSCSPWWW 8 Unmodified _WSCSPWWW_ 0 0 0 REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF REV__ENST00000393711.7_1_11:71671815-71693810:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8250122070312 3 379.825217 1136.45382 0.20986 7.9712E-05 -1.0201 -0.00038747 -0.81028 -0.00030776 379.82492758916555 67.869 0.46053 67.869 67.639 68.099 0 46 22 3 0 0 0 0.80975 1 37801 37801 0.45834 0 1 1503500 + 76293 26426 50915 52018 88951 88951 -0.10894710805905561 WSDMKQQNF 9 Unmodified _WSDMKQQNF_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14;ENST00000475640.1_1_3:122437249-122439770:+|nuORF;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2638549804688 2 592.263673 1182.51279 0.74046 0.00043855 -0.26309 -0.00015582 0.47737 0.00028273 592.2637607390382 50.735 0.44493 50.322 50.112 50.557 -0.41351 51 21 3 0 0 0 0.55144 1 27268 27268 4.3292 0 1 8227400 76294 8296;16388 50916 52019 88952 88952 -0.07116279302226758 WSDQFFGF 8 Unmodified _WSDQFFGF_ 0 0 0 REV__ENST00000293778.10_2_17:4642818-4643100:-|nuORF REV__ENST00000293778.10_2_17:4642818-4643100:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2241821289062 2 517.224342 1032.43413 0.59943 0.00031004 0.66294 0.00034289 1.2624 0.00065293 517.2244239898619 82.038 0.33157 81.543 81.342 81.674 -0.4952 18 12 2 0 0 0 0.80624 1 44881 44881 2.8892 0.31174 1 545010 + 76295 25250 50917 52020 88953 88953 -0.08078763544995127 WSDYFRVINP 10 Unmodified _WSDYFRVINP_ 0 0 0 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1;REV__nc|ENSG00000196632|Q9BYP7-3|WNK3 REV__nc|ENSG00000060237|Q9H4A3-5|WNK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8829345703125 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 31.476 1 31.476 30.976 31.976 0 0 0 0 0.98857 1 16396 16396 1.9064 0.1641 1 + 76296 29496;23851 50918 52021 88954 88954 -0.006117980909493781 WSELGFTFLH 10 Unmodified _WSELGFTFLH_ 0 0 0 REV__ENST00000261596.8_1_18:2960663-2960744:-|nuORF REV__ENST00000261596.8_1_18:2960663-2960744:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.538330078125 3 412.873113 1235.59751 NaN NaN NaN NaN NaN NaN NaN 16.756 1 16.762 16.262 17.262 0.0050564 0 0 0 0.99248 1 8417 8417 0.62683 0 1 + 76297 24997 50919 52022 88955 88955 -0.010865854939538622 WSENHIHFV 9 Unmodified _WSENHIHFV_ 0 0 0 REV__ENSG00000088812|ENST00000262919|ATRN REV__ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.1891784667969 3 390.189324 1167.54614 0.35162 0.0001372 -0.033379 -1.3024E-05 0.31824 0.00012417 390.18923061173035 26.173 0.21257 26.141 26.012 26.224 -0.031708 39 13 4 0 0 0 0.27545 1 13415 13415 18.373 3.1246 1 64848000 + 76298 17811 50920 52023 88956 88956 -0.030929094680232083 WSENHIHFV 9 Unmodified _WSENHIHFV_ 0 0 0 REV__ENSG00000088812|ENST00000262919|ATRN REV__ENSG00000088812|ENST00000262919|ATRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.1894836425781 3 390.189324 1167.54614 0.12777 4.9856E-05 0.45879 0.00017901 0.58656 0.00022887 390.18941858193125 25.918 0.14032 25.945 25.864 26.004 0.026951 12 7 2 0 0 0 0.37578 1 13415 13415 13.615 7.423 1 7288000 + 76299 17811 50920 52023 88957 88957 -0.030929094680232083 WSFSNRMF 8 Unmodified _WSFSNRMF_ 0 0 0 REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.7467041015625 2 537.744919 1073.47529 3.5539 0.0019111 0.64994 0.0003495 4.2038 0.0022606 537.7450768753937 99.511 0.17514 99.475 99.379 99.554 -0.036301 11 6 2 0 0 0 0.80143 1 55277 55277 5.7604 0 1 3323300 + 76300 27159 50921 52024 88958 88958 -0.05851325777166494 WSFSNRMF 8 Unmodified _WSFSNRMF_ 0 0 0 REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF REV__ENST00000447274.6_1_11:67069239-67069807:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 537.744919 1073.47529 3.5539 0.0019111 0.64994 0.0003495 4.2038 0.0022606 537.7450768753937 99.511 0.17514 99.475 99.379 99.554 -0.036301 0 0 NaN 5.7604 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3323300 + 76301 27159 50921 52024 -0.05851325777166494 WSGAKPAR 8 Unmodified _WSGAKPAR_ 0 0 0 REV__ENST00000372398.5_1_9:132996305-132996389:+|nuORF REV__ENST00000372398.5_1_9:132996305-132996389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.8461303710938 2 436.740494 871.466435 0.83078 0.00036283 1.4234 0.00062165 2.2542 0.00098448 436.74123746107784 68.824 0.58801 68.849 68.479 69.067 0.025146 55 27 4 0 0 0 0.80311 1 37824 37824 4.756 0 1 19595000 + 76302 26110 50922 52025 88959 88959 0.02556068648652854 WSGKFDSL 8 Unmodified _WSGKFDSL_ 0 0 0 REV__nc|ENSG00000089159|P49023-3|PXN REV__nc|ENSG00000089159|P49023-3|PXN MSMS AL20221201_MKP_PDAC_01 4 470.2330932617188 2 470.232168 938.449782 NaN NaN NaN NaN NaN NaN NaN 77.004 1 70.828 70.328 71.328 -6.1757 0 0 0 0.88073 1 50363 50363 19.439 0 1 + 76303 29522 50923 52026 88960 88960 -0.021904770279661534 WSGSRWDKSI 10 Unmodified _WSGSRWDKSI_ 0 0 0 REV__ENST00000570987.1_1_17:9176664-9176712:-|nuORF REV__ENST00000570987.1_1_17:9176664-9176712:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2040100097656 3 407.871883 1220.59382 1.0404 0.00042434 -0.4547 -0.00018546 0.58567 0.00023888 407.87184323200785 36.819 0.38234 32.536 32.337 32.719 -4.2835 40 22 2 0 0 0 0.62068 1 21475 21475 5.7834 0 1 13121000 + 76304 28975 50924 52027 88961 88961 -0.007652552678337088 WSGYGKEL 8 Unmodified _WSGYGKEL_ 0 0 0 REV__ENST00000262811.10_1_19:18261341-18261566:+|nuORF REV__ENST00000262811.10_1_19:18261341-18261566:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 939.4583740234375 1 939.457059 938.449782 0.017384 1.6332E-05 0.20476 0.00019236 0.22214 0.0002087 939.4569776470719 70.191 0.30029 69.712 69.568 69.869 -0.47903 32 16 3 0 0 0 0.80232 1 38453 38453 5.2307 0 1 4639300 + 76305 25032 50925 52028 88962 88962 -0.02190477027943416 WSGYTPNWL 9 Unmodified _WSGYTPNWL_ 0 0 0 REV__ENSG00000171094|ENST00000389048|ALK REV__ENSG00000171094|ENST00000389048|ALK MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.1788024902344 3 375.178425 1122.51345 0.69014 0.00025893 -0.44743 -0.00016787 0.24271 9.1061E-05 375.1781589496341 16.186 0.17562 13.629 13.545 13.721 -2.557 52 29 2 0 0 0 0.52067 1 8338 8338 3.8763 0.80407 1 2151200 + 76306 22531 50926 52029 88963 88963 -0.04291116590866295 WSHLAPVR 8 Unmodified _WSHLAPVR_ 0 0 0 REV__ENST00000440007.5_1_10:119250311-119301635:-|nuORF REV__ENST00000440007.5_1_10:119250311-119301635:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.8661193847656 2 483.269419 964.524284 0.045749 2.2109E-05 -1.3288 -0.00064218 -1.2831 -0.00062007 483.26875767963855 51.634 0.3361 51.2 50.988 51.325 -0.43367 44 17 4 0 0 0 0.75262 1 27761 27761 12.532 3.9383 1 36021000 + 76307 27070 50927 52030 88964 88964 0.040603305740773976 WSHRRLRPRRW 11 Unmodified _WSHRRLRPRRW_ 0 0 0 REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF REV__ENST00000216733.7_1_14:23834263-23834767:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 803.4592895507812 2 803.458533 1604.90251 NaN NaN NaN NaN NaN NaN NaN 52.284 1 52.284 51.784 52.784 0 0 0 0 0.9435 1 28930 28930 0 0 1 + 76308 24744 50928 52031 88965 88965 0.12425868213426838 WSISIWQHL 9 Unmodified _WSISIWQHL_ 0 0 0 ENST00000471247.5_1_3:156869522-156869621:-|nuORF ENST00000471247.5_1_3:156869522-156869621:-|nuORF ENST00000471247.5_1_3:156869522-156869621:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.2052001953125 3 390.541586 1168.60293 -0.16415 -6.4109E-05 -0.26134 -0.00010206 -0.42549 -0.00016617 390.5415107046503 37.648 0.28707 37.666 37.552 37.839 0.01704 33 13 3 0 0 0 0.2001 1 20072 20072 16.149 5.8339 1 11831000 76309 13867 50929 52032 88966 88966 0.025371380885189865 WSKLFTWRFIR 11 Unmodified _WSKLFTWRFIR_ 0 0 0 REV__ENST00000541028.5_1_15:52553308-52587917:-|nuORF REV__ENST00000541028.5_1_15:52553308-52587917:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 770.4329223632812 2 770.432796 1538.85104 NaN NaN NaN NaN NaN NaN NaN 36.019 1 31.826 31.326 32.326 -4.1928 0 0 0 0.94184 1 20983 20983 1.1933 0 1 + 76310 28589 50930 52033 88967 88967 0.10316686676151221 WSKLQRRI 8 Unmodified _WSKLQRRI_ 0 0 0 ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF ENSG00000117000|ENST00000372771|RLF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.87060546875 3 362.889209 1085.6458 0.20922 7.5924E-05 -0.39427 -0.00014308 -0.18505 -6.7153E-05 362.8895050974361 39.46 0.61059 39.471 39.063 39.674 0.011456 57 28 3 0 0 0 8.7369 1 20813 20813 3.2813 0.99853 1 2799300 76311 3276 50931 52034 88968 88968 0.10639952936617192 WSKSCCFTSR 10 Unmodified _WSKSCCFTSR_ 0 0 0 REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.179931640625 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 2.5125 1 2.5125 2.0125 3.0125 0 0 0 0 1.0029 1 1221 1221 0.12286 0.039514 1 + 76312 26941 50932 52035 88969 88969 -0.07711932800020804 WSKSCCFTSR 10 Unmodified _WSKSCCFTSR_ 0 0 0 REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1805114746094 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 0.23812 1 0.21606 -0.28394 0.71606 -0.022065 0 0 0 1.0029 1 128 128 0.12286 0.039514 1 + 76313 26941 50932 52035 88970 88970 -0.07711932800020804 WSKSCCFTSR 10 Unmodified _WSKSCCFTSR_ 0 0 0 REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF REV__ENST00000428482.5_2_2:242206301-242208418:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 402.1815490722656 3 402.179443 1203.5165 NaN NaN NaN NaN NaN NaN NaN 0.5812 1 -1.9008 -2.4008 -1.4008 -2.482 0 0 0 1.0029 1 307 307 0.12286 0.039514 1 + 76314 26941 50932 52035 88971 88971 -0.07711932800020804 WSKTTLQEDVF 11 Unmodified _WSKTTLQEDVF_ 0 0 0 ENST00000527101.5_1_11:60229673-60229996:+|nuORF ENST00000527101.5_1_11:60229673-60229996:+|nuORF ENST00000527101.5_1_11:60229673-60229996:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 677.8414916992188 2 677.337892 1352.66123 1.0301 0.00069772 -0.19336 -0.00013097 0.83673 0.00056675 677.3377329922869 74.181 0.80927 68.005 67.724 68.534 -6.1757 79 41 2 0 0 0 0.26516 1 48493 48493 27.223 4.487 1 28530000 76315 14828 50933 52036 88972 88972 -0.0009926984753292345 WSLERYFYLI 10 Unmodified _WSLERYFYLI_ 0 0 0 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 ENSG00000107719|ENST00000263563|PALD1 MSMS AL20221201_MKP_PDAC_01 4 463.5769348144531 3 463.911568 1388.71287 NaN NaN NaN NaN NaN NaN NaN 23.397 1 20.618 20.118 21.118 -2.7784 0 0 0 0.97592 1 12663 12663 1.5923 0.89462 1 76316 2510 50934 52037 88973 88973 0.034065186370526135 WSLFQKHF 8 Unmodified _WSLFQKHF_ 0 0 0 ENST00000467307.1_1_12:109509452-109519261:+|nuORF ENST00000467307.1_1_12:109509452-109519261:+|nuORF ENST00000467307.1_1_12:109509452-109519261:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.7835083007812 2 546.784902 1091.55525 -0.14808 -8.0967E-05 -1.6221 -0.00088693 -1.7702 -0.0009679 546.7836776621346 37.253 0.24511 37.274 37.13 37.375 0.021545 25 10 3 0 0 0 0.6895 1 19760 19760 18.135 0 1 4419100 76317 13775 50935 52038 88974 88974 0.013134838883161137 WSLKRVIK 8 Unmodified _WSLKRVIK_ 0 0 0 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.33251953125 2 515.332019 1028.64948 1.5221 0.00078438 -0.79861 -0.00041155 0.72349 0.00037284 515.3318654627394 106.23 0.9032 100.05 99.702 100.61 -6.1757 266 148 3 0 0 0 0.81007 1 71072 71072 0.6015 0 1 8449000 + 76318 22691 50936 52039 88975 88975 0.13630622710434181 WSLMDGFEW 9 Unmodified _WSLMDGFEW_ 0 0 0 ENSG00000133116|ENST00000380099|KL;nc|ENSG00000133116|Q9UEF7-2|KL ENSG00000133116|ENST00000380099|KL ENSG00000133116|ENST00000380099|KL MSMS AL20221201_MKP_PDAC_01 4 390.835205078125 3 390.83567 1169.48518 NaN NaN NaN NaN NaN NaN NaN 60.084 1 53.969 53.469 54.469 -6.1147 0 0 0 0.46757 1 38640 38640 16.149 0 1 76319 4491 50937 52040 88976 88976 -0.09278182562457005 WSLRLPSHL 9 Unmodified _WSLRLPSHL_ 0 0 0 REV__nc|ENSG00000127564|Q99640-2|PKMYT1 REV__nc|ENSG00000127564|Q99640-2|PKMYT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 370.2132568359375 3 370.213581 1107.61891 0.36745 0.00013603 0.27024 0.00010005 0.63769 0.00023608 370.2134680826231 52.908 0.23894 52.844 52.742 52.981 -0.063423 24 11 3 0 0 0 0.51371 1 28690 28690 6.6304 0 1 1751400 + 76320 29623 50938 52041 88977 88977 0.06940844325413309 WSLRRTFL 8 Unmodified _WSLRRTFL_ 0 0 0 ENST00000482818.1_1_22:29726183-29727937:-|nuORF ENST00000482818.1_1_22:29726183-29727937:-|nuORF ENST00000482818.1_1_22:29726183-29727937:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 360.2106018066406 3 360.210059 1077.60835 NaN NaN NaN NaN NaN NaN NaN 46.323 1 41.243 40.743 41.743 -5.0805 0 0 0 0.94061 1 28591 28591 9.3831 1.7742 1 76321 14116 50939 52042 88978 88978 0.07264861670978462 WSLSHLPTLLL 11 Unmodified _WSLSHLPTLLL_ 0 0 0 REV__ENST00000336095.10_1_20:3914180-3914489:-|nuORF REV__ENST00000336095.10_1_20:3914180-3914489:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 640.3222045898438 2 640.374081 1278.73361 0.90366 0.00057868 3.487 0.002233 4.3907 0.0028117 640.3756915957 93.955 0.10555 87.779 87.718 87.823 -6.1757 7 5 2 0 0 0 0.2578 1 62211 62211 16.149 2.2431 1 8510200 + 76322 25644 50940 52043 88979 88979 0.10539109016713155 WSLSRLWF 8 Unmodified _WSLSRLWF_ 0 0 0 ENST00000443617.6_1_15:64041916-64041982:-|nuORF ENST00000443617.6_1_15:64041916-64041982:-|nuORF ENST00000443617.6_1_15:64041916-64041982:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7924194335938 2 547.792727 1093.5709 0.29783 0.00016315 -0.26359 -0.00014439 0.034246 1.876E-05 547.7923680073367 94.169 0.21491 94.169 94.06 94.275 0 20 14 2 0 0 0 0.80975 1 52038 52038 0.79363 0 1 285810 76323 13427 50941 52044 88980 88980 0.02785770405353105 WSNHGDSD 8 Unmodified _WSNHGDSD_ 0 0 0 nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 nc|ENSG00000148200|Q15406-3|NR6A1 MSMS AL20221201_MKP_PDAC_01 4 459.1724243164062 2 459.172838 916.331124 NaN NaN NaN NaN NaN NaN NaN 4.9277 1 2.4457 1.9457 2.9457 -2.482 0 0 0 0.97444 1 2501 2501 0 0 1 76324 5902 50942 52045 88981 88981 -0.13038876003611222 WSNSENVLL 9 Unmodified _WSNSENVLL_ 0 0 0 REV__ENST00000484559.1_1_2:160728960-160761235:-|nuORF REV__ENST00000484559.1_1_2:160728960-160761235:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7269897460938 2 531.266739 1060.51892 0.40181 0.00021347 2.127 0.00113 2.5288 0.0013435 531.2679844585069 88.096 0.24336 87.592 87.482 87.725 -0.50423 15 9 2 0 0 0 0.20727 1 48242 48242 7.9102 0.62092 1 607630 + 76325 17280 50943 52046 88982 88982 -0.008914377990549838 WSPCYDCAR 9 Unmodified _WSPCYDCAR_ 0 0 0 nc|ENSG00000111732|Q9GZX7-2|AICDA;ENST00000545576.1_1_12:8757676-8765375:-|nuORF;ENSG00000111732|ENST00000229335|AICDA nc|ENSG00000111732|Q9GZX7-2|AICDA nc|ENSG00000111732|Q9GZX7-2|AICDA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4807434082031 3 367.481122 1099.42154 0.24987 9.1824E-05 -0.58172 -0.00021377 -0.33184 -0.00012195 367.4809392683588 52.849 0.33747 52.849 52.702 53.039 0 28 15 2 0 0 0 0.58865 1 29295 29295 1.0715 0 1 1860900 76326 2823 50944 52047 88983 88983 -0.12419866271216051 WSPGMWTWPL 10 Unmodified _WSPGMWTWPL_ 0 0 0 REV__ENSG00000117419|ENST00000372257|ERI3 REV__ENSG00000117419|ENST00000372257|ERI3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.8688354492188 3 420.867193 1259.57975 0.91412 0.00038473 1.8393 0.0007741 2.7534 0.0011588 420.86806223268405 28.28 0.35536 25.132 25.003 25.358 -3.1482 33 18 2 0 0 0 0.62068 1 15777 15777 5.7834 0.88642 1 16944000 + 76327 19104 50945 52048 88984 88984 -0.03965624020474934 WSPLRKKPF 9 Unmodified _WSPLRKKPF_ 0 0 0 ENST00000260010.6_1_4:154626247-154626325:+|nuORF ENST00000260010.6_1_4:154626247-154626325:+|nuORF ENST00000260010.6_1_4:154626247-154626325:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3047485351562 2 579.842751 1157.67095 0.61521 0.00035672 2.7604 0.0016006 3.3756 0.0019573 579.844656579291 73.429 0.22758 73.473 73.361 73.588 0.043976 12 9 2 0 0 0 0.19613 1 40421 40421 12.532 1.7076 1 622830 76328 11220 50946 52049 88985 88985 0.09842007739166547 WSPPQKTL 8 Unmodified _WSPPQKTL_ 0 0 0 ENST00000510118.5_2_6:167184367-167271722:-|nuORF ENST00000510118.5_2_6:167184367-167271722:-|nuORF ENST00000510118.5_2_6:167184367-167271722:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7655334472656 2 478.763635 955.512717 0.82078 0.00039296 -0.044769 -2.1434E-05 0.77602 0.00037153 478.7636192974208 42.279 0.56011 37.594 37.234 37.794 -4.6846 94 35 3 0 0 0 0.48583 1 25332 25332 36.127 2.0246 1 53552000 76329 14581 50947 52050 88986 88986 0.03318088760090632 WSPPQKTL 8 Unmodified _WSPPQKTL_ 0 0 0 ENST00000510118.5_2_6:167184367-167271722:-|nuORF ENST00000510118.5_2_6:167184367-167271722:-|nuORF ENST00000510118.5_2_6:167184367-167271722:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 478.763635 955.512717 0.14127 6.7634E-05 0.095903 4.5915E-05 0.23717 0.00011355 478.7636356408663 37.951 0.26001 37.679 37.562 37.822 -0.27133 0.042615 3.5199E-05 NaN 36.127 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 7788400 76330 14581 50947 52050 0.03318088760090632 WSPSDTPLY 9 Unmodified _WSPSDTPLY_ 0 0 0 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 ENSG00000103657|ENST00000443617|HERC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2464599609375 2 533.248015 1064.48148 NaN NaN NaN NaN NaN NaN NaN 17.569 1 17.583 17.083 18.083 0.013865 0 0 0 0.84564 1 8746 8746 2.0598 0.21551 1 76331 2158 50948 52051 88987 88987 -0.048185290646415524 WSQASTVW 8 Unmodified _WSQASTVW_ 0 0 0 REV__ENST00000551000.1_1_12:57871422-57871623:-|nuORF REV__ENST00000551000.1_1_12:57871422-57871623:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 966.4578857421875 1 964.452308 963.445031 0.10563 0.00010188 -1.2834 -0.0012377 -1.1777 -0.0011359 964.4509343727311 62.433 0.42522 62.433 62.23 62.655 0 68 27 3 0 0 0 0.73714 1 34780 34780 13.906 0.39817 1 25027000 + 76332 28709 50949 52052 88988 88988 -0.038153611707230084 WSQFDDLDRLF 11 Unmodified _WSQFDDLDRLF_ 0 0 0 REV__ENSG00000115306|ENST00000356805|SPTBN1 REV__ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2291564941406 3 481.229736 1440.66738 -0.50887 -0.00024488 -0.26142 -0.0001258 -0.77029 -0.00037069 481.2294900734859 27.711 0.10276 27.711 27.659 27.761 0 7 4 2 0 0 0 0.73237 1 14302 14302 1.2148 0 1 1577000 + 76333 18970 50950 52053 88989 88989 -0.035327516160123196 WSQGTVTY 8 Unmodified _WSQGTVTY_ 0 0 0 REV__ENSG00000145386|ENST00000274026|CCNA2 REV__ENSG00000145386|ENST00000274026|CCNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2219848632812 2 471.2218 940.429047 0.077205 3.6381E-05 -0.0046132 -2.1738E-06 0.072592 3.4207E-05 471.2217678643572 41.932 0.1856 41.932 41.825 42.011 0 16 9 2 0 0 0 0.70294 1 22656 22656 16.942 2.3606 1 3455900 + 76334 20771 50951 52054 88990 88990 -0.043550674076186624 WSQLTPHLR 9 Unmodified _WSQLTPHLR_ 0 0 0 REV__ENST00000372530.8_2_6:43395757-43400350:+|nuORF REV__ENST00000372530.8_2_6:43395757-43400350:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5181274414062 3 379.876969 1136.60908 -0.35999 -0.00013675 -0.92881 -0.00035283 -1.2888 -0.00048959 380.2107416876209 22.548 0.22977 22.548 22.444 22.674 0 20 10 3 0 0 0 0.21822 1 11453 11453 2.4985 1.427 1 897120 + 76335 26116 50952 52055 88991 88991 0.04623656320018199 WSQPEVVL 8 Unmodified _WSQPEVVL_ 0 0 0 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 ENSG00000171811|ENST00000368586|CFAP46 MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2564697265625 2 479.255643 956.496732 0.79236 0.00037974 1.6984 0.00081396 2.4907 0.0011937 479.2565527716941 35.481 0.42724 31.289 31.143 31.57 -4.1928 64 26 3 0 0 0 0.58902 1 20660 20660 26.884 0 1 48357000 76336 8143 50953 52056 88992 88992 0.016743825231969822 WSQPWRWRYWP 11 Unmodified _WSQPWRWRYWP_ 0 0 0 ENST00000380009.8_1_5:94890875-94891094:+|nuORF ENST00000380009.8_1_5:94890875-94891094:+|nuORF ENST00000380009.8_1_5:94890875-94891094:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 824.404541015625 2 824.402027 1646.7895 NaN NaN NaN NaN NaN NaN NaN 64.28 1 58.105 57.605 58.605 -6.1757 0 0 0 0.94313 1 41631 41631 0.26902 0.26902 1 76337 12584 50954 52057 88993 88993 -0.008022450231237599 WSRDFYLMP 9 Unmodified _WSRDFYLMP_ 0 0 0 REV__ENST00000304177.9_1_15:83669893-83670055:-|nuORF REV__ENST00000304177.9_1_15:83669893-83670055:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 405.5250244140625 3 405.526948 1213.55902 NaN NaN NaN NaN NaN NaN NaN 17.376 1 17.376 16.876 17.876 0 0 0 0 0.85737 1 8555 8555 0.26902 0 1 + 76338 25356 50955 52058 88994 88994 -0.03922214400131452 WSRGPWDS 8 Unmodified _WSRGPWDS_ 0 0 0 REV__ENST00000392357.1_1_17:80010993-80011926:+|nuORF REV__ENST00000392357.1_1_17:80010993-80011926:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 990.561279296875 1 990.442806 989.435529 0.38423 0.00038056 -1.3477 -0.0013348 -0.96345 -0.00095424 990.4412784273294 57.264 0.28421 57.264 57.135 57.419 0 25 12 3 0 0 0 0.80676 1 31797 31797 2.5775 0 1 2332100 + 76339 26391 50956 52059 88995 88995 -0.059611294562500916 WSRHMSINF 9 Unmodified _WSRHMSINF_ 0 0 0 REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__ENSG00000188580|ENST00000368417|NKAIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.1908569335938 3 393.190559 1176.54985 0.3258 0.0001281 0.53209 0.00020921 0.85789 0.00033731 393.19085715807137 54.047 0.15951 53.58 53.487 53.646 -0.46664 10 7 2 0 0 0 0.58865 1 29302 29302 1.0715 0 1 1798800 + 76340 23716 50957 52060 88996 88996 -0.03136562965801204 WSRHMSINF 9 Unmodified _WSRHMSINF_ 0 0 0 REV__ENSG00000188580|ENST00000368417|NKAIN2 REV__ENSG00000188580|ENST00000368417|NKAIN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 393.190559 1176.54985 0.3258 0.0001281 0.53209 0.00020921 0.85789 0.00033731 393.19085715807137 54.047 0.15951 53.58 53.487 53.646 -0.46664 0 0 NaN 1.0715 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1798800 + 76341 23716 50957 52060 -0.03136562965801204 WSRWNHPVYA 10 Unmodified _WSRWNHPVYA_ 0 0 0 ENST00000370349.7_1_20:61584092-61584584:+|nuORF ENST00000370349.7_1_20:61584092-61584584:+|nuORF ENST00000370349.7_1_20:61584092-61584584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.2174987792969 3 439.215873 1314.62579 NaN NaN NaN NaN NaN NaN NaN 22.107 1 22.121 21.621 22.621 0.013796 0 0 0 0.99091 1 11346 11346 0.69767 0.36839 1 76342 12330 50958 52061 88997 88997 -0.01893842793992917 WSSAHQYKCH 10 Unmodified _WSSAHQYKCH_ 0 0 0 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 ENSG00000128039|ENST00000264228|SRD5A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1247.990600585938 1 1246.5422 1245.53493 1.1659 0.0014533 -0.31488 -0.00039251 0.851 0.0010608 1246.5419932167154 102.69 0.06778 96.515 96.475 96.543 -6.1757 26 14 2 0 0 0 0.62068 1 68897 68897 10.074 0 1 5406200 76343 4044 50959 52062 88998 88998 -0.07802054833791772 WSSDVLFI 8 Unmodified _WSSDVLFI_ 0 0 0 REV__ENSG00000163359|ENST00000295550|COL6A3 REV__ENSG00000163359|ENST00000295550|COL6A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7531433105469 2 483.750193 965.485833 0.54322 0.00026278 -1.3803 -0.00066772 -0.83708 -0.00040494 483.7500377245896 75.904 0.6061 75.427 75.255 75.861 -0.47714 61 25 3 0 0 0 0.80143 1 41737 41737 5.7604 0 1 3239000 + 76344 21753 50960 52063 88999 88999 0.0017098014890279956 WSSEVAGSLY 10 Unmodified _WSSEVAGSLY_ 0 0 0 nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF nc|ENSG00000138798|P01133-2|EGF nc|ENSG00000138798|P01133-2|EGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7586669921875 2 549.758746 1097.50294 0.58213 0.00032003 -0.71676 -0.00039404 -0.13462 -7.4011E-05 549.7581591048407 59.649 0.33691 59.649 59.379 59.716 0 37 14 3 0 0 0 0.04925 1 33209 33209 58.679 22.552 1 28274000 76345 5108 50961 52064 89000 89000 -0.04191144035939942 WSTDVLGSDF 10 Unmodified _WSTDVLGSDF_ 0 0 0 nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 nc|ENSG00000165219|Q14C86-3|GAPVD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1736145019531 3 376.173228 1125.49785 NaN NaN NaN NaN NaN NaN NaN 19.084 1 19.084 18.584 19.584 0 0 0 0 0.96981 1 9525 9525 1.9064 0 1 76346 7311 50962 52065 89001 89001 -0.05987447898564824 WSTFGWYF 8 Unmodified _WSTFGWYF_ 0 0 0 REV__ENSG00000205678|ENST00000381210|TECRL REV__ENSG00000205678|ENST00000381210|TECRL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2424926757812 2 547.242535 1092.47052 NaN NaN NaN NaN NaN NaN NaN 82.871 1 82.871 82.371 83.371 0 0 0 0 0.97444 1 45967 45967 0 0 1 + 76347 24236 50963 52066 89002 89002 -0.0720188664829493 WSTLTHSHC 9 Unmodified _WSTLTHSHC_ 0 0 0 ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2;nc|ENSG00000170324|Q68DX3-3|FRMPD2;ENST00000486151.5_1_10:49420141-49482610:-|nuORF ENSG00000170324|ENST00000374201|FRMPD2 ENSG00000170324|ENST00000374201|FRMPD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 357.857177734375 3 357.827398 1070.46036 -0.53601 -0.0001918 0.3357 0.00012012 -0.2003 -7.1674E-05 357.8276670522834 26.616 0.37502 26.616 26.428 26.803 0 44 17 4 0 0 0 0.21572 1 13674 13674 4.5289 0.33936 1 3858300 76348 7971 50964 52067 89003 89003 -0.07204817645151707 WSTTDECPTDE 11 Unmodified _WSTTDECPTDE_ 0 0 0 REV__ENSG00000214700|ENST00000429849|C12orf71 REV__ENSG00000214700|ENST00000429849|C12orf71 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.240234375 2 642.240257 1282.46596 NaN NaN NaN NaN NaN NaN NaN 19.424 1 19.432 18.932 19.932 0.0078487 0 0 0 0.9435 1 9880 9880 0 0 1 + 76349 24320 50965 52068 89004 89004 -0.16397228434698263 WSVDCWYF 8 Unmodified _WSVDCWYF_ 0 0 0 REV__ENSG00000131044|ENST00000535842|TTLL9 REV__ENSG00000131044|ENST00000535842|TTLL9 MSMS AL20221201_MKP_PDAC_01 4 369.1872253417969 3 369.153111 1104.4375 NaN NaN NaN NaN NaN NaN NaN 43.013 1 38.329 37.829 38.829 -4.6846 0 0 0 0.9706 1 26061 26061 4.3292 0 1 + 76350 19766 50966 52069 89005 89005 -0.11053836762675928 WSVEELLAL 9 Unmodified _WSVEELLAL_ 0 0 0 REV__ENST00000454936.5_1_22:50684197-50686327:-|nuORF REV__ENST00000454936.5_1_22:50684197-50686327:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.2904663085938 2 530.289682 1058.56481 0.26863 0.00014245 1.2406 0.00065786 1.5092 0.00080032 530.2904327105423 99.52 0.13896 99.362 99.268 99.407 -0.1575 8 4 2 0 0 0 0.28047 1 54337 54337 18.135 0 1 1536000 + 76351 27239 50967 52070 89006 89006 0.037872073831977104 WSVEVIPQ 8 Unmodified _WSVEVIPQ_ 0 0 0 ENSG00000065357|ENST00000331886|DGKA ENSG00000065357|ENST00000331886|DGKA ENSG00000065357|ENST00000331886|DGKA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.2562561035156 2 479.255643 956.496732 -0.19947 -9.5595E-05 1.1965 0.00057343 0.99704 0.00047784 479.25625179573603 31.872 0.43817 31.902 31.67 32.109 0.030106 37 19 3 0 0 0 0.55032 1 16684 16684 30.225 0 1 14794000 76352 900 50968 52071 89007 89007 0.016743825231969822 WSVEVIPQ 8 Unmodified _WSVEVIPQ_ 0 0 0 ENSG00000065357|ENST00000331886|DGKA ENSG00000065357|ENST00000331886|DGKA ENSG00000065357|ENST00000331886|DGKA MULTI-MSMS AL20221201_MKP_PDAC_01 4 479.2572937011719 2 479.255643 956.496732 0.79236 0.00037974 1.6984 0.00081396 2.4907 0.0011937 479.2565527716941 35.481 0.42724 31.289 31.143 31.57 -4.1928 64 26 3 0 0 0 0.63229 1 20529 20529 23.148 0 1 48357000 76353 900 50968 52071 89008 89008 0.016743825231969822 WSWGWPKF 8 Unmodified _WSWGWPKF_ 0 0 0 REV__ENST00000355803.8_1_16:1376147-1376570:+|nuORF REV__ENST00000355803.8_1_16:1376147-1376570:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2666015625 2 547.266345 1092.51814 NaN NaN NaN NaN NaN NaN NaN 97.047 1 96.795 96.295 97.295 -0.25181 0 0 0 0.97444 1 52996 52996 0.79363 0 1 + 76354 25817 50969 52072 89009 89009 -0.024421876574251655 WSWYEWYRWR 10 Unmodified _WSWYEWYRWR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.8045043945312 3 539.917716 1616.73132 0.12817 6.9199E-05 3.0363 0.0016393 3.1644 0.0017085 539.9192972705168 20.87 0.11293 20.881 20.8 20.913 0.010553 9 5 2 0 0 0 0.24008 1 10637 10637 0.62683 0.4675 1 811860 + 76355 25293 50970 52073 89010 89010 -0.05237926668428372 WSWYEWYRWRR 11 Unmodified _WSWYEWYRWRR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.1097412109375 2 887.423491 1772.83243 NaN NaN NaN NaN NaN NaN NaN 82.714 1 82.714 82.214 83.214 0 0 0 0 0.9435 1 45882 45882 0 0 1 + 76356 25293 50971 52074 89011 89011 -0.02307474965732581 WSWYEWYRWRR 11 Unmodified _WSWYEWYRWRR_ 0 0 0 REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF REV__ENST00000299314.11_1_12:102159966-102161843:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 887.4212646484375 2 887.423491 1772.83243 NaN NaN NaN NaN NaN NaN NaN 82.825 1 82.825 82.325 83.325 0 0 0 0 0.9435 1 45942 45942 0 0 1 + 76357 25293 50971 52074 89012 89012 -0.02307474965732581 WSYREVYF 8 Unmodified _WSYREVYF_ 0 0 0 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 384.1673583984375 3 383.850308 1148.5291 0.96147 0.00036906 1.6878 0.00064787 2.6493 0.0010169 383.85081798763326 46.207 0.24704 41.252 41.08 41.327 -4.9549 27 16 2 0 0 0 8.7369 1 28364 28364 0.45834 0 1 14684000 + 76358 17554 50972 52075 89013 89013 -0.039228300738159305 WTALLFIYLHH 11 Unmodified _WTALLFIYLHH_ 0 0 0 nc|ENSG00000106648|Q7Z4T8-2|GALNTL5;ENSG00000106648|ENST00000392800|GALNTL5 nc|ENSG00000106648|Q7Z4T8-2|GALNTL5 nc|ENSG00000106648|Q7Z4T8-2|GALNTL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.9292297363281 3 471.92744 1412.76049 NaN NaN NaN NaN NaN NaN NaN 80.206 1 80.206 79.706 80.706 0 0 0 0 0.94307 1 44538 44538 0.08335 0 1 76359 2449 50973 52076 89014 89014 0.07062217627890277 WTASKNLF 8 Unmodified _WTASKNLF_ 0 0 0 REV__nc|ENSG00000173662|Q7RTX1-4|TAS1R1 REV__nc|ENSG00000173662|Q7RTX1-4|TAS1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.7554931640625 2 483.75581 965.497067 0.41697 0.00020171 -0.75183 -0.0003637 -0.33486 -0.00016199 483.7553138079632 62.166 0.25483 62.133 61.966 62.22 -0.032787 28 12 3 0 0 0 0.46494 1 33919 33919 38.151 11.81 1 11275000 + 76360 29791 50974 52077 89015 89015 0.012938022430375895 WTAVHLANI 9 Unmodified _WTAVHLANI_ 0 0 0 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 ENSG00000130158|ENST00000294618|DOCK6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.7481689453125 2 512.782359 1023.55016 0.93293 0.00047839 -0.58878 -0.00030192 0.34415 0.00017647 512.7818691160718 47.48 0.24041 47.441 47.299 47.54 -0.038643 15 10 2 0 0 0 0.20358 1 25543 25543 6.2058 2.2614 1 1006300 76361 4182 50975 52078 89016 89016 0.03933180025705951 WTCRPRRL 8 Unmodified _WTCRPRRL_ 0 0 0 ENST00000397682.7_1_21:47743335-47743485:-|nuORF ENST00000397682.7_1_21:47743335-47743485:-|nuORF ENST00000397682.7_1_21:47743335-47743485:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3012084960938 2 544.300727 1086.5869 NaN NaN NaN NaN NaN NaN NaN 13.838 1 13.79 13.29 14.29 -0.048298 0 0 0 0.97444 1 6713 6713 0 0 1 76362 12829 50976 52079 89017 89017 0.047071533706230184 WTDAWMKRPD 10 Unmodified _WTDAWMKRPD_ 0 0 0 ENSG00000163810|ENST00000296125|TGM4 ENSG00000163810|ENST00000296125|TGM4 ENSG00000163810|ENST00000296125|TGM4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.3056030273438 2 653.305872 1304.59719 NaN NaN NaN NaN NaN NaN NaN 88.469 1 88.469 87.969 88.969 0 0 0 0 1.0024 1 48968 48968 0.40072 0 1 76363 7073 50977 52080 89018 89018 -0.04292328485462349 WTDGVLSNIF 10 Unmodified _WTDGVLSNIF_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2908935546875 2 576.290214 1150.56587 0.55841 0.00032181 0.34714 0.00020005 0.90554 0.00052186 576.290352529376 70.968 0.32773 70.49 70.331 70.659 -0.47735 32 14 3 0 0 0 0.24625 1 38877 38877 30.637 2.1497 1 2857300 76364 9988 50978 52081 89019 89019 -0.00338578247942678 WTFKEWFWLER 11 Unmodified _WTFKEWFWLER_ 0 0 0 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 ENSG00000154227|ENST00000679737|CERS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 814.4093627929688 2 814.406444 1626.79833 1.3913 0.0011331 0.73035 0.0005948 2.1217 0.0017279 814.4069323056151 49.943 0.28357 49.894 49.723 50.006 -0.048824 42 13 4 0 0 0 0.66968 1 26964 26964 7.1017 6.8327 1 11409000 76365 6307 50979 52082 89020 89020 0.010006838226900072 WTHGWGPAW 9 Unmodified _WTHGWGPAW_ 0 0 0 REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF REV__ENST00000588894.1_1_16:4845878-4846229:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.838134765625 3 366.503243 1096.4879 NaN NaN NaN NaN NaN NaN NaN 16.117 1 16.119 15.619 16.619 0.0010548 0 0 0 0.8622 1 7939 7939 0 0 1 + 76366 29130 50980 52083 89021 89021 -0.05648546322640868 WTHLVRLLRLI 11 Unmodified _WTHLVRLLRLI_ 0 0 0 nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2 nc|ENSG00000132958|Q6XPS3-4|TPTE2 nc|ENSG00000132958|Q6XPS3-4|TPTE2 MSMS AL20221201_MKP_PDAC_01 4 473.9709777832031 3 473.969751 1418.88742 NaN NaN NaN NaN NaN NaN NaN 15.255 1 12.728 12.228 13.228 -2.5273 0 0 0 0.9435 1 7811 7811 0 0 1 76367 4470 50981 52084 89022 89022 0.1947356357291028 WTIGPGGRGGG 11 Unmodified _WTIGPGGRGGG_ 0 0 0 REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2 REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.4244384765625 2 507.759415 1013.50428 NaN NaN NaN NaN NaN NaN NaN 15.228 1 15.228 14.728 15.728 0 0 0 0 0.9435 1 7315 7315 0 0 1 + 76368 29605 50982 52085 89023 89023 -0.0019346515650795482 WTIGPGGRGGG 11 Unmodified _WTIGPGGRGGG_ 0 0 0 REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2 REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.590576171875 2 507.759415 1013.50428 NaN NaN NaN NaN NaN NaN NaN 15.237 1 15.237 14.737 15.737 0 0 0 0 0.9435 1 7321 7321 0 0 1 + 76369 29605 50982 52085 89024 89024 -0.0019346515650795482 WTILERLLE 9 Unmodified _WTILERLLE_ 0 0 0 ENSG00000159248|ENST00000290374|GJD2 ENSG00000159248|ENST00000290374|GJD2 ENSG00000159248|ENST00000290374|GJD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.80908203125 2 586.837331 1171.66011 0.76154 0.0004469 -0.35598 -0.0002089 0.40555 0.00023799 586.8369910081601 69.082 0.13647 69.113 69.03 69.166 0.030914 10 6 2 0 0 0 0.21367 1 37946 37946 4.756 0 1 1319700 76370 6639 50983 52086 89025 89025 0.08114560574222196 WTKEEDQKV 9 Unmodified _WTKEEDQKV_ 0 0 0 nc|ENSG00000101057|P10244-2|MYBL2;ENSG00000101057|ENST00000217026|MYBL2 nc|ENSG00000101057|P10244-2|MYBL2 nc|ENSG00000101057|P10244-2|MYBL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.1958923339844 3 388.196144 1161.5666 NaN NaN NaN NaN NaN NaN NaN 15.223 1 15.209 14.709 15.709 -0.014067 0 0 0 0.85798 1 7462 7462 0.23584 0.076522 1 76371 1907 50984 52087 89026 89026 -0.007717835988614752 WTKRGMIV 8 Unmodified _WTKRGMIV_ 0 0 0 REV__ENSG00000178700|ENST00000314636|DHFR2 REV__ENSG00000178700|ENST00000314636|DHFR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7815856933594 2 495.781305 989.548056 NaN NaN NaN NaN NaN NaN NaN 94.952 1 94.584 94.084 95.084 -0.36814 0 0 0 0.97444 1 51868 51868 0 0 1 + 76372 23059 50985 52088 89027 89027 0.05286428016268019 WTLKRTGTP 9 Unmodified _WTLKRTGTP_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-2|VPS13C REV__nc|ENSG00000129003|Q709C8-2|VPS13C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.8695373535156 3 353.869703 1058.58728 -0.45253 -0.00016013 0.19413 6.8697E-05 -0.25839 -9.1438E-05 353.86975003549526 20.029 0.28075 20.058 19.921 20.201 0.028357 41 13 4 0 0 0 0.61801 1 10200 10200 0.26902 0 1 16862000 + 76373 19645 50986 52089 89028 89028 0.06032851571490028 WTLLLLCI 8 Unmodified _WTLLLLCI_ 0 0 0 REV__ENSG00000092068|ENST00000316902|SLC7A8 REV__ENSG00000092068|ENST00000316902|SLC7A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7908630371094 2 487.790807 973.56706 0.62839 0.00030652 -0.21177 -0.0001033 0.41662 0.00020322 487.79064345290396 86.454 0.46928 85.95 85.722 86.191 -0.50318 59 19 4 0 0 0 0.80975 1 47325 47325 0.79363 0 1 6693600 + 76374 17901 50987 52090 89029 89029 0.07921964587285402 WTLLLLCI 8 Unmodified _WTLLLLCI_ 0 0 0 REV__ENSG00000092068|ENST00000316902|SLC7A8 REV__ENSG00000092068|ENST00000316902|SLC7A8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 487.790807 973.56706 0.62839 0.00030652 -0.21177 -0.0001033 0.41662 0.00020322 487.79064345290396 86.454 0.46928 85.95 85.722 86.191 -0.50318 0 0 NaN 0.79363 59 19 4 NaN NaN NaN NaN 0 NaN NaN 0 6693600 + 76375 17901 50987 52090 0.07921964587285402 WTLPGGRQ 8 Unmodified _WTLPGGRQ_ 0 0 0 nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB nc|ENSG00000180900|Q14160-2|SCRIB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7474060058594 2 457.745776 913.477 0.31867 0.00014587 1.5583 0.0007133 1.877 0.00085917 457.74637046600657 70.914 0.30479 70.437 70.331 70.636 -0.47736 23 13 2 0 0 0 0.81107 1 38894 38894 0 0 1 1481600 76376 8930 50988 52091 89030 89030 0.016800513031057562 WTLYAVLAF 9 Unmodified _WTLYAVLAF_ 0 0 0 REV__ENSG00000101438|ENST00000217420|SLC32A1 REV__ENSG00000101438|ENST00000217420|SLC32A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2965087890625 2 542.29731 1082.58007 0.57852 0.00031373 -2.5804 -0.0013993 -2.0019 -0.0010856 542.2955737046907 68.605 0.26608 68.63 68.458 68.724 0.025154 24 12 3 0 0 0 0.30562 1 37676 37676 16.942 0 1 1784400 + 76377 18172 50989 52092 89031 89031 0.042081189710415856 WTMQTGPKGHG 11 Unmodified _WTMQTGPKGHG_ 0 0 0 ENST00000429872.1_1_7:647673-647772:+|nuORF ENST00000429872.1_1_7:647673-647772:+|nuORF ENST00000429872.1_1_7:647673-647772:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8279418945312 2 600.28494 1198.55533 -0.034722 -2.0843E-05 0.014895 8.941E-06 -0.019828 -1.1902E-05 600.2849661411218 84.532 0.29899 84.532 84.443 84.742 0 18 13 2 0 0 0 0.7453 1 46928 46928 0 0 1 524950 76378 13224 50990 52093 89032 89032 -0.03600884173965824 WTPLVCLSTS 10 Unmodified _WTPLVCLSTS_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MSMS AL20221201_MKP_PDAC_01 4 553.7826538085938 2 553.781167 1105.54778 NaN NaN NaN NaN NaN NaN NaN 82.434 1 76.258 75.758 76.758 -6.1757 0 0 0 0.7417 1 54147 54147 14.838 0.93222 1 + 76379 22334 50991 52094 89033 89033 -0.0007703649425820913 WTPWDLVEP 9 Unmodified _WTPWDLVEP_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2498779296875 2 571.779482 1141.54441 NaN NaN NaN NaN NaN NaN NaN 73.864 1 73.864 73.364 74.364 0 0 0 0 0.82739 1 41115 41115 4.3292 2.2695 1 + 76380 18320 50992 52095 89034 89034 -0.020699632766081777 WTQASYHVY 9 Unmodified _WTQASYHVY_ 0 0 0 ENST00000430320.3_1_1:31302723-31306574:+|nuORF;ENST00000438790.1_1_1:31297649-31306574:+|nuORF ENST00000430320.3_1_1:31302723-31306574:+|nuORF ENST00000430320.3_1_1:31302723-31306574:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7650146484375 2 577.766906 1153.51926 NaN NaN NaN NaN NaN NaN NaN 53.673 1 53.609 53.109 54.109 -0.063423 0 0 0 0.50124 1 29124 29124 15.847 7.2539 1 76381 13238 50993 52096 89035 89035 -0.05136018079201676 WTRKRRKERER 11 Unmodified _WTRKRRKERER_ 0 0 0 ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2;ENST00000546616.1_1_14:105609034-105613077:-|nuORF ENSG00000184916|ENST00000331782|JAG2 ENSG00000184916|ENST00000331782|JAG2 MSMS AL20221201_MKP_PDAC_01 4 800.9677734375 2 800.966388 1599.91822 NaN NaN NaN NaN NaN NaN NaN 37.452 1 33.168 32.668 33.668 -4.2835 0 0 0 0.9435 1 21983 21983 0 0 1 76382 9302 50994 52097 89036 89036 0.14226109939818343 WTRKRRKERER 11 Unmodified _WTRKRRKERER_ 0 0 0 ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2;ENST00000546616.1_1_14:105609034-105613077:-|nuORF ENSG00000184916|ENST00000331782|JAG2 ENSG00000184916|ENST00000331782|JAG2 MSMS AL20221201_MKP_PDAC_01 4 800.9681396484375 2 800.966388 1599.91822 NaN NaN NaN NaN NaN NaN NaN 37.854 1 33.485 32.985 33.985 -4.3689 0 0 0 0.9435 1 22253 22253 0 0 1 76383 9302 50994 52097 89037 89037 0.14226109939818343 WTRRGGALPGR 11 Unmodified _WTRRGGALPGR_ 0 0 0 REV__ENST00000242783.10_1_19:14544283-14551982:+|nuORF REV__ENST00000242783.10_1_19:14544283-14551982:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.847412109375 2 613.846887 1225.67922 NaN NaN NaN NaN NaN NaN NaN 70.01 1 69.531 69.031 70.031 -0.47903 0 0 0 0.79635 1 38278 38278 12.241 0 1 + 76384 24847 50995 52098 89038 89038 0.07540954708497338 WTRSQKVEF 9 Unmodified _WTRSQKVEF_ 0 0 0 ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2081909179688 3 394.208495 1179.60366 -0.64487 -0.00025421 0.69055 0.00027222 0.045675 1.8005E-05 394.2088171809639 15.989 0.104 15.989 15.949 16.053 0 38 24 2 0 0 0 0.58865 1 7749 7749 1.0715 0 1 501400 76385 11471 50996 52099 89039 89039 0.021039327375547145 WTRSQKVEF 9 Unmodified _WTRSQKVEF_ 0 0 0 ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2077331542969 3 394.208495 1179.60366 -0.56512 -0.00022278 0.19066 7.5159E-05 -0.37447 -0.00014762 394.2086061285997 18.357 0.25836 18.357 18.27 18.529 0 92 37 3 0 0 0 0.55775 1 9089 9089 7.609 4.6137 1 5347600 76386 11471 50996 52099 89040 89040 0.021039327375547145 WTRSQKVEF 9 Unmodified _WTRSQKVEF_ 0 0 0 ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF ENST00000291232.4_2_22:42319167-42319323:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2089233398438 3 394.208495 1179.60366 -0.047764 -1.8829E-05 0.23565 9.2897E-05 0.18789 7.4068E-05 394.2085895314669 18.354 0.36222 18.36 18.244 18.606 0.0060463 66 21 5 0 0 0 0.52067 1 9367 9367 3.8763 0.55669 1 47455000 76387 11471 50996 52099 89041 89041 0.021039327375547145 WTSLAFRM 8 Unmodified _WTSLAFRM_ 0 0 0 REV__ENST00000548093.5_1_12:58138905-58139004:+|nuORF REV__ENST00000548093.5_1_12:58138905-58139004:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2599792480469 2 506.257662 1010.50077 NaN NaN NaN NaN NaN NaN NaN 27.073 1 27.101 26.601 27.601 0.028664 0 0 0 0.97444 1 14062 14062 5.2307 0.47466 1 + 76388 24934 50997 52100 89042 89042 -0.00405851254731715 WTSVLLFAF 9 Unmodified _WTSVLLFAF_ 0 0 0 ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV ENSG00000060642|ENST00000674202|PIGV MSMS AL20221201_MKP_PDAC_01 4 362.20068359375 3 361.867299 1082.58007 NaN NaN NaN NaN NaN NaN NaN 50.917 1 45.268 44.768 45.768 -5.649 0 0 0 0.7453 1 31996 31996 4.897 0 1 76389 829 50998 52101 89043 89043 0.042081189710415856 WTSYVPGY 8 Unmodified _WTSYVPGY_ 0 0 0 REV__ENSG00000148158|ENST00000374232|SNX30 REV__ENSG00000148158|ENST00000374232|SNX30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7246704101562 2 486.726718 971.438883 NaN NaN NaN NaN NaN NaN NaN 28.333 1 28.333 27.833 28.833 0 0 0 0 0.9706 1 14630 14630 6.3541 0.59368 1 + 76390 20930 50999 52102 89044 89044 -0.04797879402235594 WTTATWMMA 9 Unmodified _WTTATWMMA_ 0 0 0 REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF REV__ENST00000355530.6_1_17:4389827-4391457:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2805786132812 2 549.740988 1097.46742 -0.13678 -7.5193E-05 -0.32521 -0.00017878 -0.46199 -0.00025397 549.7404573562549 56.166 0.31287 56.166 55.934 56.247 0 22 14 2 0 0 0 0.19613 1 31188 31188 12.532 0.89125 1 2548900 + 76391 25810 51000 52103 89045 89045 -0.0774122108894062 WTTYLQCHH 9 Unmodified _WTTYLQCHH_ 0 0 0 MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant MBD6|p.T684Ifs*33|1|0.06|ENSG00000166987|chr12:57527195-57527196|-/T|frameshift_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 595.30224609375 2 594.766383 1187.51821 0.31393 0.00018672 3.3644 0.002001 3.6783 0.0021877 594.767033315979 80.648 0.26966 74.473 74.391 74.66 -6.1757 17 14 2 0 0 0 0.209 1 52872 52872 7.2892 3.3448 1 9145000 76392 15986 51001 52104 89046 89046 -0.06804555719759264 WTVDTSKLVF 10 Unmodified _WTVDTSKLVF_ 0 0 0 nc|ENSG00000096696|P15924-2|DSP;nc|ENSG00000096696|P15924-3|DSP;ENSG00000096696|ENST00000379802|DSP nc|ENSG00000096696|P15924-2|DSP nc|ENSG00000096696|P15924-2|DSP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.3226318359375 2 598.321514 1194.62847 NaN NaN NaN NaN NaN NaN NaN 75.046 1 75.092 74.592 75.592 0.045959 0 0 0 0.59691 1 41379 41379 21.537 12.154 1 76393 1675 51002 52105 89047 89047 0.03894567820270822 WTVIQNRQD 9 Unmodified _WTVIQNRQD_ 0 0 0 ENSG00000171564|ENST00000302068|FGB;CON__P02676 ENSG00000171564|ENST00000302068|FGB ENSG00000171564|ENST00000302068|FGB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.19970703125 3 387.2 1158.57817 NaN NaN NaN NaN NaN NaN NaN 89.914 1 89.914 89.414 90.414 0 0 0 0 0.85798 1 49747 49747 0.23584 0 1 + 76394 160 51003 52106 89048 89048 0.005224582151413415 WTWCRRRGRR 10 Unmodified _WTWCRRRGRR_ 0 0 0 REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF REV__ENST00000598755.1_1_19:52104480-52104837:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.2589721679688 3 478.258301 1431.75307 NaN NaN NaN NaN NaN NaN NaN 16.951 1 16.952 16.452 17.452 0.0010548 0 0 0 1.0061 1 8393 8393 0 0 1 + 76395 29234 51004 52107 89049 89049 0.05446599599167712 WTWRRRRR 8 Unmodified _WTWRRRRR_ 0 0 0 ENST00000400913.5_1_1:6535562-6545948:-|nuORF;ENST00000537245.5_1_1:6535562-6556614:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF ENST00000400913.5_1_1:6535562-6545948:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8700561523438 2 636.868489 1271.72242 0.50673 0.00032272 -0.81311 -0.00051784 -0.30638 -0.00019512 636.8679822675044 81.126 1.3882 80.634 80.334 81.722 -0.49248 249 65 6 0 0 0 0.80992 1 44966 44966 0.69038 0 1 1280500000 76396 12879 51005 52108 89050 89050 0.09743189276446174 WTWYHTDLAL 10 Unmodified _WTWYHTDLAL_ 0 0 0 REV__ENSG00000068650|ENST00000375645|ATP11A REV__ENSG00000068650|ENST00000375645|ATP11A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.2470092773438 3 435.880267 1304.61897 -0.47434 -0.00020676 0.84733 0.00036934 0.37299 0.00016258 435.880478968126 27.084 0.14116 27.084 27.033 27.174 0 8 6 2 0 0 0 0.23723 1 13990 13990 6.6304 1.5829 1 975300 + 76397 17438 51006 52109 89051 89051 -0.02115200465232192 WTYDQARF 8 Unmodified _WTYDQARF_ 0 0 0 REV__nc|ENSG00000149212|P58005-4|SESN3 REV__nc|ENSG00000149212|P58005-4|SESN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.257568359375 2 543.753798 1085.49304 0.20283 0.00011029 2.7445 0.0014923 2.9473 0.0016026 543.7548139433865 91.688 0.30982 91.207 90.977 91.287 -0.48092 25 21 2 0 0 0 0.80722 1 50102 50102 2.3027 0 1 689420 + 76398 19741 51007 52110 89052 89052 -0.04628287250670837 WVAKKKFEP 9 Unmodified _WVAKKKFEP_ 0 0 0 REV__ENSG00000188352|ENST00000338382|FOCAD REV__ENSG00000188352|ENST00000338382|FOCAD MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.717041015625 3 378.221965 1131.64407 0.30965 0.00011712 0.17227 6.5156E-05 0.48192 0.00018227 378.2219227997323 39.711 0.52001 39.716 39.462 39.982 0.0050545 43 24 2 0 0 0 0.21367 1 21050 21050 2.7352 0.64919 1 1401800 + 76399 23708 51008 52111 89053 89053 0.08350899127981393 WVANEETERF 10 Unmodified _WVANEETERF_ 0 0 0 REV__nc|ENSG00000166451|Q96H22-2|CENPN REV__nc|ENSG00000166451|Q96H22-2|CENPN MULTI-MSMS AL20221201_MKP_PDAC_01 4 427.5358581542969 3 427.535048 1279.58332 0.90494 0.00038689 1.2518 0.00053521 2.1568 0.0009221 427.53536239722945 28.601 0.30997 25.452 25.282 25.592 -3.1482 35 15 3 0 0 0 0.56348 1 15936 15936 7.9454 0 1 12657000 + 76400 22122 51009 52112 89054 89054 -0.045292827129287616 WVCDQGPSY 9 Unmodified _WVCDQGPSY_ 0 0 0 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 REV__nc|ENSG00000174938|Q6UXD5-6|SEZ6L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7185668945312 2 527.718567 1053.42258 1.1345 0.00059869 0.23913 0.00012619 1.3736 0.00072489 527.7185731645019 34.178 0.43336 30.192 29.946 30.379 -3.9853 39 23 2 0 0 0 0.25681 1 19783 19783 19.257 2.3147 1 31076000 + 76401 22827 51010 52113 89055 89055 -0.10199328630642412 WVDPNSPVL 9 Unmodified _WVDPNSPVL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7665405273438 2 513.766374 1025.5182 0.23165 0.00011901 -0.51714 -0.00026569 -0.28549 -0.00014668 513.7663966243033 63.104 0.39515 63.104 62.92 63.315 0 47 16 4 0 0 0 0.03568 2 35262 35161;35262 52.268 25.385 1 6720300 76402 9767;6130;10113 51011 52114 89056;89057 89057 0.0064576755189591495 WVDPNSPVL 9 Unmodified _WVDPNSPVL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7664184570312 2 513.766374 1025.5182 0.31274 0.00016068 -2.081 -0.0010691 -1.7683 -0.00090847 513.7662818926659 63.683 0.40365 63.197 62.969 63.373 -0.48617 49 18 5 0 0 0 0.05447 1 34691 34691 43.858 16.975 1 8776000 76403 9767;6130;10113 51011 52114 89058 89058 0.0064576755189591495 WVDPNSPVL 9 Unmodified _WVDPNSPVL_ 0 0 0 ENSG00000196139|ENST00000380554|AKR1C3;nc|ENSG00000196139|P42330-2|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000198610|ENST00000263126|AKR1C4 ENSG00000196139|ENST00000380554|AKR1C3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.7669067382812 2 513.766374 1025.5182 0.93546 0.00048061 -0.71372 -0.00036668 0.22174 0.00011392 513.7662861058951 70.732 0.6152 64.556 64.244 64.859 -6.1757 63 32 3 0 0 0 0.018301 3 46119 46119;46242;46373 65.235 29.293 1 103380000 76404 9767;6130;10113 51011 52114 89059;89060;89061 89059 0.0064576755189591495 WVDSGSIVI 9 Unmodified _WVDSGSIVI_ 0 0 0 ENSG00000125255|ENST00000245312|SLC10A2 ENSG00000125255|ENST00000245312|SLC10A2 ENSG00000125255|ENST00000245312|SLC10A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2613220214844 2 488.260925 974.507297 0.2204 0.00010761 1.1075 0.00054074 1.3279 0.00064836 488.2614990754544 81.472 0.33163 81.472 81.281 81.613 0 36 14 3 0 0 0 0.2001 2 45249 45151;45249 23.148 1.4018 1 1804600 76405 3835 51012 52115 89062;89063 89063 0.01902365177613774 WVEAGQYCCP 10 Unmodified _WVEAGQYCCP_ 0 0 0 ENST00000376560.7_2_6:30531210-30531318:+|nuORF ENST00000376560.7_2_6:30531210-30531318:+|nuORF ENST00000376560.7_2_6:30531210-30531318:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.2335815429688 2 578.233527 1154.4525 0.36416 0.00021057 0.42062 0.00024321 0.78477 0.00045378 578.2338893576735 39.497 0.51802 39.497 39.202 39.72 0 42 24 2 0 0 0 0.54684 2 21223 21089;21223 13.906 5.9959 1 2972700 76406 12502 51013 52116 89064;89065 89065 -0.11854712956960611 WVEEVEEY 8 Unmodified _WVEEVEEY_ 0 0 0 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7393188476562 2 541.73748 1081.46041 NaN NaN NaN NaN NaN NaN NaN 77.09 1 77.09 76.59 77.59 0 0 0 0 0.97444 1 42859 42859 2.5775 0.73324 1 + 76407 18783 51014 52117 89066 89066 -0.07706539164178139 WVEKRLLGFLH 11 Unmodified _WVEKRLLGFLH_ 0 0 0 ENST00000609131.1_1_9:4676681-4679417:-|nuORF ENST00000609131.1_1_9:4676681-4679417:-|nuORF ENST00000609131.1_1_9:4676681-4679417:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.2071228027344 4 350.206762 1396.79794 1.2168 0.00042613 -0.37959 -0.00013294 0.83721 0.0002932 350.2066992692638 50.263 0.64935 50.214 49.846 50.495 -0.048824 48 31 2 0 0 0 0.74096 1 27218 27218 0.40827 0.041592 1 15695000 76408 15875 51015 52118 89067 89067 0.11541308893515634 WVFFFFFLSG 10 Unmodified _WVFFFFFLSG_ 0 0 0 ENST00000360051.7_1_2:242256941-242257010:+|nuORF ENST00000360051.7_1_2:242256941-242257010:+|nuORF ENST00000360051.7_1_2:242256941-242257010:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8843688964844 3 432.886582 1295.63792 NaN NaN NaN NaN NaN NaN NaN 16.908 1 16.908 16.408 17.408 0 0 0 0 0.99897 1 8289 8289 0.77653 0.27058 1 76409 12157 51016 52119 89068 89068 0.001923808964647833 WVFFLITK 8 Unmodified _WVFFLITK_ 0 0 0 ENST00000311351.8_1_8:38020978-38021044:-|nuORF ENST00000311351.8_1_8:38020978-38021044:-|nuORF ENST00000311351.8_1_8:38020978-38021044:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.8761291503906 3 351.875906 1052.60589 NaN NaN NaN NaN NaN NaN NaN 14.599 1 14.599 14.099 15.099 0 0 0 0 0.97444 1 6953 6953 0.45834 0 1 76410 11689 51017 52120 89069 89069 0.08169013213318976 WVFRRRWRLNF 11 Unmodified _WVFRRRWRLNF_ 0 0 0 nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 nc|ENSG00000169783|Q96FE5-2|LINGO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4603881835938 2 818.46021 1634.90587 NaN NaN NaN NaN NaN NaN NaN 96.397 1 96.397 95.897 96.897 0 0 0 0 0.9435 1 53271 53271 0 0 1 76411 7916 51018 52121 89070 89070 0.11381118267445345 WVGPGPDG 8 Unmodified _WVGPGPDG_ 0 0 0 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 ENSG00000257108|ENST00000424439|NHLRC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.6853637695312 2 392.684853 783.355153 0.66001 0.00025918 -0.35003 -0.00013745 0.30998 0.00012172 392.6848029285594 71.587 0.2991 71.626 71.469 71.768 0.039024 34 13 4 0 0 0 0.80975 1 39348 39348 0.79363 0 1 2823700 76412 10809 51019 52122 89071 89071 -0.04518990779286014 WVILIIAL 8 Unmodified _WVILIIAL_ 0 0 0 REV__ENSG00000182083|ENST00000319423|OR6B2 REV__ENSG00000182083|ENST00000319423|OR6B2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 941.1231079101562 1 940.623002 939.615725 -0.31252 -0.00029396 -0.66011 -0.00062091 -0.97262 -0.00091487 940.6206296115585 104.16 0.097961 104.11 104.08 104.18 -0.048737 6 4 2 0 0 0 8.7369 1 57847 57847 0 0 1 1585100 + 76413 23238 51020 52123 89072 89072 0.14350201218690017 WVINLHEVY 9 Unmodified _WVINLHEVY_ 0 0 0 ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A ENSG00000164543|ENST00000319357|STK17A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.81005859375 2 586.808574 1171.60259 0.42542 0.00024964 4.424 0.0025961 4.8494 0.0028457 586.8098386018834 73.348 0.35949 73.392 73.252 73.612 0.043983 28 15 3 0 0 0 0.21643 1 40422 40422 21.537 8.0291 1 2560300 76414 7205 51021 52124 89073 89073 0.02365718368673697 WVKEEKLF 8 Unmodified _WVKEEKLF_ 0 0 0 REV__ZNF225|p.F65V|1|0.16|ENSG00000256294|chr19:44118532-44118532|T/G|missense_variant REV__ZNF225|p.F65V|1|0.16|ENSG00000256294|chr19:44118532-44118532|T/G|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.20166015625 3 360.20257 1077.58588 NaN NaN NaN NaN NaN NaN NaN 20.968 1 20.968 20.468 21.468 0 0 0 0 0.97444 1 10578 10578 1.8442 0.19162 1 + 76415 30138 51022 52125 89074 89074 0.05019217482708882 WVKKKALLL 9 Unmodified _WVKKKALLL_ 0 0 0 REV__nc|ENSG00000182732|P49758-16|RGS6 REV__nc|ENSG00000182732|P49758-16|RGS6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.8740844726562 2 549.87352 1097.73249 NaN NaN NaN NaN NaN NaN NaN 21.587 1 21.601 21.101 22.101 0.013796 0 0 0 0.8622 1 11064 11064 0 0 1 + 76416 29839 51023 52126 89075 89075 0.18752939438468275 WVLETKEVY 9 Unmodified _WVLETKEVY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.8096313476562 2 583.808239 1165.60193 -0.16445 -9.6009E-05 0.82833 0.00048358 0.66387 0.00038758 583.8088564962243 55.148 0.23253 55.148 55.029 55.262 0 12 9 2 0 0 0 0.30202 1 30641 30641 17.113 4.5813 1 1171200 76417 7074 51024 52127 89076 89076 0.02574878928930957 WVLETKEVY 9 Unmodified _WVLETKEVY_ 0 0 0 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 ENSG00000163811|ENST00000407426|WDR43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.8084716796875 2 583.808239 1165.60193 0.054637 3.1897E-05 -0.036804 -2.1487E-05 0.017832 1.0411E-05 583.8081199181304 55.738 0.28903 55.26 55.112 55.401 -0.47798 26 13 3 0 0 0 0.36964 2 30217 30217;30275 13.906 2.0785 1 2390100 76418 7074 51024 52127 89077;89078 89077 0.02574878928930957 WVLKVIKSLI 10 Unmodified _WVLKVIKSLI_ 0 0 0 REV__ENST00000607001.1_1_5:72793681-72793945:-|nuORF REV__ENST00000607001.1_1_5:72793681-72793945:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 400.2699584960938 3 400.268915 1197.78492 NaN NaN NaN NaN NaN NaN NaN 92.406 1 86.23 85.73 86.73 -6.1757 0 0 0 0.99897 1 61109 61109 0.77653 0.14971 1 + 76419 29303 51025 52128 89079 89079 0.19393477781409274 WVLLLCLA 8 Unmodified _WVLLLCLA_ 0 0 0 REV__ENSG00000131389|ENST00000622186|SLC6A6 REV__ENSG00000131389|ENST00000622186|SLC6A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7778930664062 2 465.777699 929.540846 0.42653 0.00019867 -0.026172 -1.219E-05 0.40036 0.00018648 465.77773988502764 83.684 0.61386 83.186 82.938 83.552 -0.49751 58 25 3 0 0 0 0.81107 1 45712 45712 0 0 1 10832000 + 76420 19787 51026 52129 89080 89080 0.07325695415795508 WVLRRSKSS 9 Unmodified _WVLRRSKSS_ 0 0 0 REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF REV__ENST00000468507.1_1_1:157648751-157659660:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5530700683594 3 373.552485 1117.63563 0.97257 0.00036331 -0.8799 -0.00032869 0.092676 3.4619E-05 373.55215124390503 17.43 0.21162 14.844 14.728 14.94 -2.5866 71 40 2 0 0 0 0.52844 1 9086 9086 3.5871 0.59182 1 15972000 + 76421 27455 51027 52130 89081 89081 0.08151345211376793 WVLYEMPNYR 10 Unmodified _WVLYEMPNYR_ 0 0 0 ENSG00000168582|ENST00000304502|CRYGA ENSG00000168582|ENST00000304502|CRYGA ENSG00000168582|ENST00000304502|CRYGA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 685.83447265625 2 685.831723 1369.64889 -0.043219 -2.9641E-05 1.1686 0.00080144 1.1253 0.0007718 685.8326516595296 38.606 0.32359 38.319 38.174 38.498 -0.28687 37 15 3 0 0 0 0.67413 1 20295 20295 10.074 4.3421 1 18656000 76422 7782 51028 52131 89082 89082 -0.021145847915477134 WVLYEMPNYR 10 Unmodified _WVLYEMPNYR_ 0 0 0 ENSG00000168582|ENST00000304502|CRYGA ENSG00000168582|ENST00000304502|CRYGA ENSG00000168582|ENST00000304502|CRYGA MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 685.831723 1369.64889 0.074322 5.0972E-05 1.1658 0.00079952 1.2401 0.00085049 685.8324563578904 38.157 0.19185 38.157 38.028 38.22 0 -0.081195 -3.2279E-06 NaN 10.074 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 5818200 76423 7782 51028 52131 -0.021145847915477134 WVNFDDTGSEK 11 Unmodified _WVNFDDTGSEK_ 0 0 0 REV__ENSG00000115386|ENST00000233735|REG1A REV__ENSG00000115386|ENST00000233735|REG1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 649.2883911132812 2 649.288399 1296.56225 NaN NaN NaN NaN NaN NaN NaN 18.337 1 18.344 17.844 18.844 0.0060463 0 0 0 0.9435 1 9290 9290 0 0 1 + 76424 18976 51029 52132 89083 89083 -0.07417292812465348 WVPLKFKKGI 10 Unmodified _WVPLKFKKGI_ 0 0 0 REV__ENSG00000110711|ENST00000279146|AIP REV__ENSG00000110711|ENST00000279146|AIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.383544921875 2 608.384251 1214.75395 NaN NaN NaN NaN NaN NaN NaN 103.29 1 103.24 102.74 103.74 -0.047928 0 0 0 1.0019 1 57359 57359 0.45834 0.057624 1 + 76425 18716 51030 52133 89084 89084 0.15516324467171216 WVPLPKALR 9 Unmodified _WVPLPKALR_ 0 0 0 ENST00000491910.5_1_22:24981856-24984399:-|nuORF ENST00000491910.5_1_22:24981856-24984399:-|nuORF ENST00000491910.5_1_22:24981856-24984399:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5628356933594 3 360.562321 1078.66514 NaN NaN NaN NaN NaN NaN NaN 36.815 1 36.836 36.336 37.336 0.021545 0 0 0 0.84021 1 19519 19519 2.7352 0 1 76426 14288 51031 52134 89085 89085 0.1289490922749792 WVPPYLLI 8 Unmodified _WVPPYLLI_ 0 0 0 ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF ENST00000560219.2_1_15:90321464-90321809:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 500.7960510253906 2 500.796946 999.57934 NaN NaN NaN NaN NaN NaN NaN 73.358 1 67.182 66.682 67.682 -6.1757 0 0 0 0.78208 1 47976 47976 24.21 0 1 76427 15308 51032 52135 89086 89086 0.07953324321988475 WVPVLAAP 8 Unmodified _WVPVLAAP_ 0 0 0 ENST00000339554.7_2_9:140343470-140343713:-|nuORF ENST00000339554.7_2_9:140343470-140343713:-|nuORF ENST00000339554.7_2_9:140343470-140343713:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.7517700195312 2 426.752539 851.490525 NaN NaN NaN NaN NaN NaN NaN 0.41647 1 0.39441 -0.10559 0.89441 -0.022065 0 0 0 0.97444 1 223 223 0 0 1 76428 11952 51033 52136 89087 89087 0.058839090823084916 WVPWWLCR 8 Unmodified _WVPWWLCR_ 0 0 0 ENST00000593093.5_1_19:1271113-1271461:+|nuORF ENST00000593093.5_1_19:1271113-1271461:+|nuORF ENST00000593093.5_1_19:1271113-1271461:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 383.1967163085938 3 382.528623 1144.56404 -0.44427 -0.00016995 1.632 0.00062429 1.1877 0.00045435 382.5293762107172 20.734 0.2692 20.734 20.576 20.846 0 41 19 3 0 0 0 0.80975 1 10403 10403 0.45834 0.18932 1 1293400 76429 15729 51034 52137 89088 89088 -0.002458657468423553 WVQFWQTV 8 Unmodified _WVQFWQTV_ 0 0 0 REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10 REV__nc|ENSG00000176834|Q8N0Z9-2|VSIG10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.27587890625 2 547.276909 1092.53927 -0.60025 -0.0003285 -0.48388 -0.00026482 -1.0841 -0.00059332 547.27646359301 19.547 0.1964 19.576 19.451 19.648 0.028355 38 20 2 0 0 0 0.80799 1 9817 9817 0 0 1 1142800 + 76430 22945 51035 52138 89089 89089 -0.0033022234858890442 WVQGKTWGPF 10 Unmodified _WVQGKTWGPF_ 0 0 0 REV__nc|ENSG00000170266|P16278-2|GLB1 REV__nc|ENSG00000170266|P16278-2|GLB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.3082275390625 2 603.308741 1204.60293 NaN NaN NaN NaN NaN NaN NaN 78.455 1 78.455 77.955 78.955 0 0 0 0 0.98914 1 43599 43599 1.8442 0 1 + 76431 22464 51036 52139 89090 89090 0.008811380884935716 WVRKFAPY 8 Unmodified _WVRKFAPY_ 0 0 0 REV__nc|ENSG00000136960|Q13822-3|ENPP2 REV__nc|ENSG00000136960|Q13822-3|ENPP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7953491210938 2 533.795269 1065.57599 NaN NaN NaN NaN NaN NaN NaN 94.706 1 94.286 93.786 94.786 -0.42044 0 0 0 0.97444 1 51738 51738 2.5775 0.27475 1 + 76432 29650 51037 52140 89091 89091 0.04582074268000724 WVRNWTLWKYF 11 Unmodified _WVRNWTLWKYF_ 0 0 0 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 ENSG00000184210|ENST00000333026|DGAT2L6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1599.086181640625 1 1598.82668 1597.8194 1.1423 0.0018263 -0.079457 -0.00012704 1.0628 0.0016993 1599.8306607053444 58.089 0.12181 58.023 57.95 58.072 -0.066036 8 5 2 0 0 0 0.30605 1 31650 31650 0 0 1 3158600 76433 9231 51038 52141 89092 89092 0.0444069392219717 WVRPCWLA 8 Unmodified _WVRPCWLA_ 0 0 0 ENST00000525315.5_1_8:11708209-11710963:-|nuORF ENST00000525315.5_1_8:11708209-11710963:-|nuORF ENST00000525315.5_1_8:11708209-11710963:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7681884765625 2 515.768197 1029.52184 NaN NaN NaN NaN NaN NaN NaN 94.493 1 94.073 93.573 94.573 -0.42044 0 0 0 0.97444 1 51625 51625 0 0 1 76434 14795 51039 52142 89093 89093 0.008261588447794566 WVRPQWRRWWT 11 Unmodified _WVRPQWRRWWT_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.9617919921875 3 552.960138 1655.85858 0.49331 0.00027278 2.566 0.0014189 3.0593 0.0016917 553.2955903412733 28.077 0.21535 24.929 24.826 25.041 -3.1482 23 11 3 0 0 0 0.74429 1 15640 15640 0.094841 0.094841 1 8080300 + 76435 19788 51040 52143 89094 89094 0.05688838996434242 WVRPQWRRWWT 11 Unmodified _WVRPQWRRWWT_ 0 0 0 REV__ENSG00000131398|ENST00000477616|KCNC3 REV__ENSG00000131398|ENST00000477616|KCNC3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 552.742431640625 3 552.960138 1655.85858 0.49331 0.00027278 2.566 0.0014189 3.0593 0.0016917 553.2955903412733 28.077 0.21535 24.929 24.826 25.041 -3.1482 23 11 3 0 0 0 0.30605 1 15580 15580 0 0 1 8080300 + 76436 19788 51040 52143 89095 89095 0.05688838996434242 WVSAVPWLI 9 Unmodified _WVSAVPWLI_ 0 0 0 REV__ENST00000342355.8_1_11:30965860-31263019:-|nuORF REV__ENST00000342355.8_1_11:30965860-31263019:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.5391540527344 3 357.539294 1069.59605 NaN NaN NaN NaN NaN NaN NaN 48.174 1 48.135 47.635 48.635 -0.038643 0 0 0 0.82739 1 25978 25978 2.4985 0 1 + 76437 22526 51041 52144 89096 89096 0.06403825207939917 WVTICCQF 8 Unmodified _WVTICCQF_ 0 0 0 REV__ENST00000523945.1_1_8:94753536-94753683:+|nuORF REV__ENST00000523945.1_1_8:94753536-94753683:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 500.2276000976562 2 500.224974 998.435394 0.074059 3.7046E-05 3.3184 0.00166 3.3925 0.001697 500.22663457269124 16.716 0.11214 16.721 16.659 16.772 0.0050564 9 6 2 0 0 0 0.80722 1 8400 8400 2.3027 0.4585 1 436090 + 76438 28324 51042 52145 89097 89097 -0.06388588772108506 WVVRWKWCL 9 Unmodified _WVVRWKWCL_ 0 0 0 ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF ENST00000254644.12_1_2:86439609-86439759:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1276.09130859375 1 1275.68193 1274.67465 -0.12996 -0.00016579 0.29138 0.00037171 0.16142 0.00020592 1276.6849421188745 54.501 0.13535 54.034 54.007 54.143 -0.46664 8 6 2 0 0 0 0.2191 1 29579 29579 0 0 1 1233500 76439 11164 51043 52146 89098 89098 0.04830354241380519 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.823486328125 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 0.4031 1 0.32918 -0.17082 0.82918 -0.07392 0 0 0 0.97444 1 203 203 0 0 1 76440 686 51044 52147 89099 89099 0.15270487735767801 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8226928710938 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 2.0151 1 1.9431 1.4431 2.4431 -0.072029 0 0 0 0.97444 1 1003 1003 0 0 1 76441 686 51044 52147 89100 89100 0.15270487735767801 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8232727050781 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 8.8178 1 8.7263 8.2263 9.2263 -0.09156 0 0 0 0.97444 1 4319 4319 0 0 1 76442 686 51044 52147 89101 89101 0.15270487735767801 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.8226318359375 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 15.716 1 15.702 15.202 16.202 -0.014067 0 0 0 0.97444 1 7728 7728 0 0 1 76443 686 51044 52147 89102 89102 0.15270487735767801 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8226623535156 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 1.923 1 1.906 1.406 2.406 -0.017019 0 0 0 0.97444 1 987 987 0 0 1 76444 686 51044 52147 89103 89103 0.15270487735767801 WVVVIILI 8 Unmodified _WVVVIILI_ 0 0 0 ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK ENSG00000047597|ENST00000378616|XK MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 477.8239440917969 2 477.822964 953.631375 NaN NaN NaN NaN NaN NaN NaN 2.2467 1 2.2296 1.7296 2.7296 -0.017019 0 0 0 0.97444 1 1146 1146 0 0 1 76445 686 51044 52147 89104 89104 0.15270487735767801 WVYKKWKI 8 Unmodified _WVYKKWKI_ 0 0 0 REV__ENSG00000108510|ENST00000397786|MED13 REV__ENSG00000108510|ENST00000397786|MED13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.8428344726562 2 575.84222 1149.66989 NaN NaN NaN NaN NaN NaN NaN 96.3 1 95.995 95.495 96.495 -0.30472 0 0 0 0.97444 1 52591 52591 0.79363 0 1 + 76446 18611 51045 52148 89105 89105 0.10103793370262792 WVYNHYRWIIW 11 Unmodified _WVYNHYRWIIW_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 818.4142456054688 2 818.414603 1634.81465 NaN NaN NaN NaN NaN NaN NaN 86.667 1 86.667 86.167 87.167 0 0 0 0 0.9435 1 48001 48001 0 0 1 76447 5169 51046 52149 89106 89106 0.022638097794470013 WWAILLVVL 9 Unmodified _WWAILLVVL_ 0 0 0 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 ENSG00000013293|ENST00000231706|SLC7A14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.8458862304688 2 556.846971 1111.67939 NaN NaN NaN NaN NaN NaN NaN 20.04 1 20.048 19.548 20.548 0.0078487 0 0 0 0.85737 1 10211 10211 0.6015 0.076735 1 76448 470 51047 52150 89107 89107 0.12801561655805926 WWARTRRRRRR 11 Unmodified _WWARTRRRRRR_ 0 0 0 REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF REV__ENST00000276602.10_1_8:73921164-73926156:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 828.486328125 2 828.488156 1654.96176 NaN NaN NaN NaN NaN NaN NaN 69.388 1 69.419 68.919 69.919 0.030914 0 0 0 0.94165 1 38138 38138 1.3295 0 1 + 76449 25176 51048 52151 89108 89108 0.16047764227596417 WWCWRTCWCWR 11 Unmodified _WWCWRTCWCWR_ 0 0 0 ENST00000246115.4_1_19:3178863-3179049:+|nuORF ENST00000246115.4_1_19:3178863-3179049:+|nuORF ENST00000246115.4_1_19:3178863-3179049:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 836.349853515625 2 836.349568 1670.68458 NaN NaN NaN NaN NaN NaN NaN 107.63 1 107.58 107.08 108.08 -0.047607 0 0 0 0.9435 1 59626 59626 0 0 1 76450 11121 51049 52152 89109 89109 -0.12393149087188249 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.179443359375 3 402.17966 1203.51715 -0.65713 -0.00026428 -0.16404 -6.5972E-05 -0.82117 -0.00033026 402.1798003593776 15.978 0.091318 15.978 15.916 16.007 0 30 23 2 0 0 0 0.61256 1 7714 7714 0.26902 0 1 431070 + 76451 19212 51050 52153 89110 89110 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1797485351562 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 1.1254 1 1.1254 0.62539 1.6254 0 0 0 0 0.85737 1 546 546 0.26902 0 1 + 76452 19212 51050 52153 89111 89111 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.18017578125 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 1.4023 1 1.4023 0.90229 1.9023 0 0 0 0 0.85737 1 685 685 0.26902 0 1 + 76453 19212 51050 52153 89112 89112 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1805725097656 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 5.5686 1 5.4911 4.9911 5.9911 -0.07749 0 0 0 0.85737 1 2749 2749 0.26902 0 1 + 76454 19212 51050 52153 89113 89113 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1796264648438 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 6.1467 1 6.062 5.562 6.562 -0.08463 0 0 0 0.85737 1 3035 3035 0.26902 0 1 + 76455 19212 51050 52153 89114 89114 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1799011230469 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 10.021 1 9.9315 9.4315 10.431 -0.08967 0 0 0 0.85737 1 4892 4892 0.26902 0 1 + 76456 19212 51050 52153 89115 89115 -0.07646770088649646 WWDGIHPMY 9 Unmodified _WWDGIHPMY_ 0 0 0 REV__ENSG00000119778|ENST00000238789|ATAD2B REV__ENSG00000119778|ENST00000238789|ATAD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1800842285156 3 402.17966 1203.51715 NaN NaN NaN NaN NaN NaN NaN 16.651 1 16.652 16.152 17.152 0.0010548 0 0 0 0.85737 1 8224 8224 0.26902 0 1 + 76457 19212 51050 52153 89116 89116 -0.07646770088649646 WWDPDDKNMVN 11 Unmodified _WWDPDDKNMVN_ 0 0 0 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 REV__nc|ENSG00000198399|Q9NZM3-3|ITSN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 710.30517578125 2 710.303526 1418.5925 NaN NaN NaN NaN NaN NaN NaN 75.568 1 75.091 74.591 75.591 -0.47714 0 0 0 0.94184 1 41367 41367 1.1933 0.23107 1 + 76458 24017 51051 52154 89117 89117 -0.10005257418902147 WWEASRPQP 9 Unmodified _WWEASRPQP_ 0 0 0 REV__ENST00000223791.7_2_9:117130488-117139135:-|nuORF REV__ENST00000223791.7_2_9:117130488-117139135:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1898498535156 3 386.189324 1155.54614 -0.63787 -0.00024634 1.5261 0.00058934 0.88818 0.00034301 386.1899420254612 33.972 0.20389 33.972 33.841 34.044 0 12 9 2 0 0 0 0.54444 1 17870 17870 2.7352 1.2801 1 1986300 + 76459 18542 51052 52155 89118 89118 -0.025409094680071576 WWEASRPQP 9 Unmodified _WWEASRPQP_ 0 0 0 REV__ENST00000223791.7_2_9:117130488-117139135:-|nuORF REV__ENST00000223791.7_2_9:117130488-117139135:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 386.189324 1155.54614 -0.24758 -9.5613E-05 0.095793 3.6994E-05 -0.15179 -5.8619E-05 386.189465029909 34.108 0.22495 33.917 33.795 34.02 -0.19131 -0.027241 -0.0012847 NaN 2.7352 14 8 3 NaN NaN NaN NaN 0 NaN NaN 0 623320 + 76460 18542 51052 52155 -0.025409094680071576 WWEGDEDMYK 10 Unmodified _WWEGDEDMYK_ 0 0 0 REV__ENSG00000121005|ENST00000262207|CRISPLD1 REV__ENSG00000121005|ENST00000262207|CRISPLD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.5168762207031 3 453.516777 1357.5285 0.71021 0.00032209 -1.6041 -0.00072748 -0.89387 -0.00040538 453.51602819938574 46.095 0.22709 41.14 40.999 41.226 -4.9549 21 14 2 0 0 0 0.71177 1 28366 28366 1.5923 0.13716 1 9683700 + 76461 19272 51053 52156 89119 89119 -0.1359603757584864 WWEIEDEDERH 11 Unmodified _WWEIEDEDERH_ 0 0 0 REV__nc|ENSG00000143514|Q13625|TP53BP2 REV__nc|ENSG00000143514|Q13625|TP53BP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 772.3256225585938 2 772.326044 1542.63754 NaN NaN NaN NaN NaN NaN NaN 68.747 1 68.747 68.247 69.247 0 0 0 0 0.9435 1 38315 38315 0 0 1 + 76462 20647 51054 52157 89120 89120 -0.11207735352013515 WWELCSYIL 9 Unmodified _WWELCSYIL_ 0 0 0 ENST00000269122.7_2_17:57725607-57725640:+|nuORF ENST00000269122.7_2_17:57725607-57725640:+|nuORF ENST00000269122.7_2_17:57725607-57725640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7826538085938 2 606.791535 1211.56852 -0.052052 -3.1585E-05 0.19859 0.0001205 0.14654 8.892E-05 606.7901610434152 58.629 0.60306 58.629 58.206 58.809 0 47 24 4 0 0 0 0.39863 1 32489 32489 12.532 1.7076 1 4008500 76463 11361 51055 52158 89121 89121 -0.028804461145909954 WWELCSYIL 9 Unmodified _WWELCSYIL_ 0 0 0 ENST00000269122.7_2_17:57725607-57725640:+|nuORF ENST00000269122.7_2_17:57725607-57725640:+|nuORF ENST00000269122.7_2_17:57725607-57725640:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.78369140625 2 606.791535 1211.56852 0.29805 0.00018085 0.57523 0.00034905 0.87328 0.0005299 606.7909334002361 59.308 0.65761 58.817 58.391 59.048 -0.49079 56 30 4 0 0 0 0.54444 1 32151 32151 4.756 0.42677 1 5941000 76464 11361 51055 52158 89122 89122 -0.028804461145909954 WWELLMVLEAS 11 Unmodified _WWELLMVLEAS_ 0 0 0 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 REV__nc|ENSG00000160216|Q9NRZ7-3|AGPAT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 688.849609375 2 688.849581 1375.68461 NaN NaN NaN NaN NaN NaN NaN 15.608 1 15.614 15.114 16.114 0.0057774 0 0 0 0.9435 1 7786 7786 0 0 1 + 76465 29734 51056 52159 89123 89123 0.011794526654739457 WWERMRRLRD 10 Unmodified _WWERMRRLRD_ 0 0 0 REV__ENSG00000106484|ENST00000223215|MEST REV__ENSG00000106484|ENST00000223215|MEST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 501.9301147460938 3 501.92985 1502.76772 -0.02493 -1.2513E-05 1.2981 0.00065157 1.2732 0.00063906 501.9306034201947 33.077 0.1451 33.107 33.019 33.164 0.029743 8 5 2 0 0 0 0.72464 1 17409 17409 0.15932 0.064481 1 1377100 + 76466 18513 51057 52160 89124 89124 0.036446269566567935 WWERMRRLRDR 11 Unmodified _WWERMRRLRDR_ 0 0 0 REV__ENSG00000106484|ENST00000223215|MEST REV__ENSG00000106484|ENST00000223215|MEST MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 830.4440307617188 2 830.441692 1658.86883 NaN NaN NaN NaN NaN NaN NaN 36.241 1 36.241 35.741 36.741 0 0 0 0 0.9435 1 19209 19209 0 0 1 + 76467 18513 51058 52161 89125 89125 0.06575078659352585 WWERMRRLRDR 11 Unmodified _WWERMRRLRDR_ 0 0 0 REV__ENSG00000106484|ENST00000223215|MEST REV__ENSG00000106484|ENST00000223215|MEST MSMS AL20221201_MKP_PDAC_01 4 830.44482421875 2 830.441692 1658.86883 NaN NaN NaN NaN NaN NaN NaN 42.823 1 38.138 37.638 38.638 -4.6846 0 0 0 0.9435 1 25911 25911 0 0 1 + 76468 18513 51058 52161 89126 89126 0.06575078659352585 WWFFHRHF 8 Unmodified _WWFFHRHF_ 0 0 0 ENST00000296257.9_1_3:185344110-185347744:+|nuORF ENST00000296257.9_1_3:185344110-185347744:+|nuORF ENST00000296257.9_1_3:185344110-185347744:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.5372009277344 3 421.538399 1261.59337 NaN NaN NaN NaN NaN NaN NaN 18.61 1 18.633 18.133 19.133 0.023106 0 0 0 0.95607 1 9342 9342 6.7232 4.4404 1 76469 11507 51059 52162 89127 89127 -0.026965854063519146 WWFGIRRDF 9 Unmodified _WWFGIRRDF_ 0 0 0 ENSG00000226479|ENST00000426077|TMEM185B ENSG00000226479|ENST00000426077|TMEM185B ENSG00000226479|ENST00000426077|TMEM185B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.8278198242188 2 641.827632 1281.64071 NaN NaN NaN NaN NaN NaN NaN 96.333 1 96.029 95.529 96.529 -0.30472 0 0 0 0.85737 1 52609 52609 0.6015 0 1 76470 10591 51060 52163 89128 89128 0.011156490739722358 WWFSWRRRDFL 11 Unmodified _WWFSWRRRDFL_ 0 0 0 ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 ENSG00000132793|ENST00000373257|LPIN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.9207153320312 2 827.923126 1653.8317 NaN NaN NaN NaN NaN NaN NaN 79.615 1 79.67 79.17 80.17 0.05497 0 0 0 0.9435 1 43994 43994 0 0 1 76471 4451 51061 52164 89129 89129 0.030937303852397235 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7506103515625 2 621.250557 1240.48656 0.24523 0.00015235 -2.0127 -0.0012504 -1.7674 -0.001098 621.249694498957 65.659 0.39935 65.659 65.296 65.695 0 24 15 2 0 0 0 0.78849 1 36602 36602 9.3474 5.403 1 539110 + 76472 27231 51062 52165 89130 89130 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2493286132812 2 621.250557 1240.48656 0.101 6.2746E-05 -1.9537 -0.0012137 -1.8527 -0.001151 621.2494751774601 70.592 0.59612 70.592 70.122 70.718 0 40 26 2 0 0 0 0.80232 1 39226 39226 5.2307 1.2863 1 479890 + 76473 27231 51062 52165 89131 89131 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2493896484375 2 621.250557 1240.48656 -0.061131 -3.7978E-05 -2.0654 -0.0012831 -2.1265 -0.0013211 621.2490920687749 71.185 0.3551 71.185 70.882 71.237 0 26 15 2 0 0 0 0.80232 1 39544 39544 5.2307 3.3864 1 718530 + 76474 27231 51062 52165 89132 89132 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.248779296875 2 621.250557 1240.48656 0.32169 0.00019985 -0.11295 -7.0169E-05 0.20875 0.00012968 621.7517892463737 72.21 0.40165 72.21 72.137 72.539 0 28 16 2 0 0 0 0.80232 1 40249 40249 5.2307 1.2863 1 651870 + 76475 27231 51062 52165 89133 89133 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.24853515625 2 621.250557 1240.48656 NaN NaN NaN NaN NaN NaN NaN 69.651 1 69.651 69.151 70.151 0 0 0 0 0.97444 1 38803 38803 5.2307 1.6342 1 + 76476 27231 51062 52165 89134 89134 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.249755859375 2 621.250557 1240.48656 NaN NaN NaN NaN NaN NaN NaN 69.837 1 69.837 69.337 70.337 0 0 0 0 0.97444 1 38907 38907 5.2307 1.6342 1 + 76477 27231 51062 52165 89135 89135 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2489624023438 2 621.250557 1240.48656 NaN NaN NaN NaN NaN NaN NaN 70.21 1 70.21 69.71 70.71 0 0 0 0 0.97444 1 39121 39121 5.2307 1.6342 1 + 76478 27231 51062 52165 89136 89136 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2493286132812 2 621.250557 1240.48656 NaN NaN NaN NaN NaN NaN NaN 71.653 1 71.653 71.153 72.153 0 0 0 0 0.97444 1 39909 39909 2.5775 0.92486 1 + 76479 27231 51062 52165 89137 89137 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.249267578125 2 621.250557 1240.48656 NaN NaN NaN NaN NaN NaN NaN 71.884 1 71.884 71.384 72.384 0 0 0 0 0.97444 1 40033 40033 2.5775 0.51773 1 + 76480 27231 51062 52165 89138 89138 -0.1240622520206216 WWFYDDYF 8 Unmodified _WWFYDDYF_ 0 0 0 REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF REV__ENST00000453386.6_1_3:185635356-185635488:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2489624023438 2 621.250557 1240.48656 0.101 6.2746E-05 -1.9537 -0.0012137 -1.8527 -0.001151 621.2494751774601 70.592 0.59612 70.592 70.122 70.718 0 40 26 2 0 0 0 8.7369 1 39121 39121 5.2307 3.3864 1 479890 + 76481 27231 51062 52165 89139 89139 -0.1240622520206216 WWGEDIVE 8 Unmodified _WWGEDIVE_ 0 0 0 REV__nc|ENSG00000136279|Q9UJU6-5|DBNL REV__nc|ENSG00000136279|Q9UJU6-5|DBNL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2321166992188 2 517.234907 1032.45526 NaN NaN NaN NaN NaN NaN NaN 19.311 1 19.334 18.834 19.834 0.023106 0 0 0 0.97444 1 9729 9729 0.79363 0 1 + 76482 20154 51063 52166 89140 89140 -0.059667982361588656 WWGPECHCVG 10 Unmodified _WWGPECHCVG_ 0 0 0 REV__ENST00000573867.1_1_17:1546734-1549000:-|nuORF REV__ENST00000573867.1_1_17:1546734-1549000:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.2337646484375 2 587.233861 1172.45317 NaN NaN NaN NaN NaN NaN NaN 1.4398 1 1.4398 0.93981 1.9398 0 0 0 0 1.0061 1 703 703 0 0 1 + 76483 17556 51064 52167 89141 89141 -0.1261587351725666 WWHIKYDKYQR 11 Unmodified _WWHIKYDKYQR_ 0 0 0 REV__nc|ENSG00000126457|Q99873-2|PRMT1 REV__nc|ENSG00000126457|Q99873-2|PRMT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 811.9143676757812 2 811.914967 1621.81538 NaN NaN NaN NaN NaN NaN NaN 89.299 1 89.346 88.846 89.846 0.047852 0 0 0 0.9435 1 49677 49677 0 0 1 + 76484 19546 51065 52168 89142 89142 0.029346044284693562 WWHNWRRT 8 Unmodified _WWHNWRRT_ 0 0 0 REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.3074340820312 2 621.307398 1240.60024 NaN NaN NaN NaN NaN NaN NaN 91.742 1 91.742 91.242 92.242 0 0 0 0 0.97444 1 50734 50734 0 0 1 + 76485 24878 51066 52169 89143 89143 -0.010432725257942366 WWHNWRRTS 9 Unmodified _WWHNWRRTS_ 0 0 0 REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.8233642578125 2 664.823412 1327.63227 NaN NaN NaN NaN NaN NaN NaN 15.994 1 15.999 15.499 16.499 0.0050564 0 0 0 0.8622 1 7998 7998 0 0 1 + 76486 24878 51067 52170 89144 89144 -0.01843904842644406 WWHQAFYNF 9 Unmodified _WWHQAFYNF_ 0 0 0 ENSG00000109163|ENST00000226413|GNRHR ENSG00000109163|ENST00000226413|GNRHR ENSG00000109163|ENST00000226413|GNRHR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.7897338867188 2 649.790715 1297.56688 -0.28852 -0.00018748 1.1185 0.00072681 0.83001 0.00053933 649.7913810339195 31.679 0.21705 31.679 31.561 31.778 0 30 10 4 0 0 0 0.2001 1 16480 16480 23.148 2.7339 1 5857100 76487 2635 51068 52171 89145 89145 -0.07000319088342621 WWKFRKQCFWE 11 Unmodified _WWKFRKQCFWE_ 0 0 0 ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 822.3994140625 2 822.400638 1642.78672 NaN NaN NaN NaN NaN NaN NaN 37.012 1 37.012 36.512 37.512 0 0 0 0 0.94307 1 19662 19662 0.30703 0.30703 1 76488 14740 51069 52172 89146 89146 -0.008958364722730039 WWKFRKQCFWE 11 Unmodified _WWKFRKQCFWE_ 0 0 0 ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 822.4026489257812 2 822.400638 1642.78672 NaN NaN NaN NaN NaN NaN NaN 42.866 1 42.866 42.366 43.366 0 0 0 0 0.9435 1 23240 23240 0 0 1 76489 14740 51069 52172 89147 89147 -0.008958364722730039 WWKFRKQCFWE 11 Unmodified _WWKFRKQCFWE_ 0 0 0 ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF ENST00000521082.5_1_7:23207536-23207620:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 822.39794921875 2 822.400638 1642.78672 NaN NaN NaN NaN NaN NaN NaN 43.033 1 38.269 37.769 38.769 -4.7648 0 0 0 0.94313 1 26079 26079 0.26902 0 1 76490 14740 51069 52172 89148 89148 -0.008958364722730039 WWLANYLWERF 11 Unmodified _WWLANYLWERF_ 0 0 0 REV__ENSG00000105509|ENST00000540069|HAS1 REV__ENSG00000105509|ENST00000540069|HAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 792.3960571289062 2 792.393336 1582.77212 0.19985 0.00015836 0.18739 0.00014848 0.38724 0.00030684 792.3937572879721 71.88 0.33014 71.404 71.242 71.572 -0.47609 48 12 5 0 0 0 0.72952 1 39295 39295 1.4819 0 1 8421500 + 76491 18430 51070 52173 89149 89149 0.004044146512114821 WWLKRAERWEW 11 Unmodified _WWLKRAERWEW_ 0 0 0 REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF REV__ENST00000381989.3_1_13:25072288-25074457:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 823.4260864257812 2 823.422959 1644.83137 NaN NaN NaN NaN NaN NaN NaN 72.151 1 65.975 65.475 66.475 -6.1757 0 0 0 0.94184 1 47215 47215 1.1933 0.92432 1 + 76492 26340 51071 52174 89150 89150 0.0347431066536501 WWLLAVLPV 9 Unmodified _WWLLAVLPV_ 0 0 0 nc|ENSG00000154359|Q17RB8-2|LONRF1;ENSG00000154359|ENST00000398246|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 nc|ENSG00000154359|Q17RB8-2|LONRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8333740234375 2 548.83132 1095.64809 NaN NaN NaN NaN NaN NaN NaN 104.53 1 104.48 103.98 104.98 -0.048737 0 0 0 0.85261 1 58038 58038 2.3027 1.902 1 76493 6323 51072 52175 89151 89151 0.10408988621679782 WWMQRRWPG 9 Unmodified _WWMQRRWPG_ 0 0 0 ENST00000247161.7_1_X:47500674-47500782:-|nuORF ENST00000247161.7_1_X:47500674-47500782:-|nuORF ENST00000247161.7_1_X:47500674-47500782:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8826904296875 3 434.881948 1301.62402 NaN NaN NaN NaN NaN NaN NaN 50.334 1 50.334 49.834 50.834 0 0 0 0 0.85737 1 27743 27743 0.26902 0 1 76494 11125 51073 52176 89152 89152 -0.014731750836290303 WWPKCYFNEE 10 Unmodified _WWPKCYFNEE_ 0 0 0 ENST00000297979.9_1_9:97844893-97849221:+|nuORF ENST00000297979.9_1_9:97844893-97849221:+|nuORF ENST00000297979.9_1_9:97844893-97849221:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 701.2998657226562 2 701.300255 1400.58596 NaN NaN NaN NaN NaN NaN NaN 12.013 1 9.5307 9.0307 10.031 -2.482 0 0 0 1.0024 1 6055 6055 0.40072 0 1 76495 11528 51074 52177 89153 89153 -0.09831150579589121 WWPRLWRPVI 10 Unmodified _WWPRLWRPVI_ 0 0 0 REV__ENST00000481206.1_1_14:105935538-105936549:+|nuORF REV__ENST00000481206.1_1_14:105935538-105936549:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 704.89990234375 2 704.903674 1407.7928 NaN NaN NaN NaN NaN NaN NaN 94.682 1 94.262 93.762 94.762 -0.42044 0 0 0 0.98914 1 51725 51725 1.8442 0.6509 1 + 76496 27689 51075 52178 89154 89154 0.10521049821522865 WWQDNWLWHDL 11 Unmodified _WWQDNWLWHDL_ 0 0 0 ENST00000431490.1_1_3:45201441-45201549:-|nuORF ENST00000431490.1_1_3:45201441-45201549:-|nuORF ENST00000431490.1_1_3:45201441-45201549:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 799.8622436523438 2 799.8624 1597.71025 NaN NaN NaN NaN NaN NaN NaN 77.245 1 77.245 76.745 77.745 0 0 0 0 0.9435 1 42942 42942 0 0 1 76497 13258 51076 52179 89155 89155 -0.06469936767916806 WWQFCRWERLQ 11 Unmodified _WWQFCRWERLQ_ 0 0 0 REV__ENST00000430334.7_1_17:43555485-43568071:-|nuORF REV__ENST00000430334.7_1_17:43555485-43568071:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 819.3939208984375 2 819.393345 1636.77214 NaN NaN NaN NaN NaN NaN NaN 52.784 1 52.332 51.832 52.832 -0.45173 0 0 0 0.9435 1 28532 28532 0 0 1 + 76498 26963 51077 52180 89156 89156 -0.020779086204356645 WWQGPWPR 8 Unmodified _WWQGPWPR_ 0 0 0 ENST00000245222.8_1_19:49133008-49133209:+|nuORF ENST00000245222.8_1_19:49133008-49133209:+|nuORF ENST00000245222.8_1_19:49133008-49133209:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7748413085938 2 556.774868 1111.53518 NaN NaN NaN NaN NaN NaN NaN 96.848 1 96.848 96.348 97.348 0 0 0 0 0.97444 1 53518 53518 0 0 1 76499 11118 51078 52181 89157 89157 -0.016122670516324433 WWQPWWWWKLQ 11 Unmodified _WWQPWWWWKLQ_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 865.4251098632812 2 865.424971 1728.83539 NaN NaN NaN NaN NaN NaN NaN 85.623 1 85.623 85.123 86.123 0 0 0 0 0.9435 1 47445 47445 0 0 1 76500 76 51079 52182 89158 89158 0.00012400159107528452 WWQWLKWRRLR 11 Unmodified _WWQWLKWRRLR_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 857.2003784179688 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 27.557 1 27.51 27.01 28.01 -0.046408 0 0 0 0.9435 1 14205 14205 0 0 1 76501 15171 51080 52183 89159 89159 0.12485977818550964 WWQWLKWRRLR 11 Unmodified _WWQWLKWRRLR_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 857.4815673828125 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 26.556 1 26.583 26.083 27.083 0.026951 0 0 0 0.9435 1 13777 13777 0 0 1 76502 15171 51080 52183 89160 89160 0.12485977818550964 WWQWLKWRRLR 11 Unmodified _WWQWLKWRRLR_ 0 0 0 ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF ENST00000551099.5_1_12:113659271-113664634:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 857.4833374023438 2 857.483686 1712.95282 NaN NaN NaN NaN NaN NaN NaN 27.082 1 27.111 26.611 27.611 0.028664 0 0 0 0.9435 1 14067 14067 0 0 1 76503 15171 51080 52183 89161 89161 0.12485977818550964 WWQYDERTSRE 11 Unmodified _WWQYDERTSRE_ 0 0 0 nc|ENSG00000118518|Q9NTX7-2|RNF146;ENSG00000118518|ENST00000368314|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 778.348388671875 2 778.349854 1554.68515 -0.056789 -4.4201E-05 -0.45914 -0.00035737 -0.51592 -0.00040157 778.349281099759 51.686 0.43525 51.686 51.561 51.996 0 52 19 4 0 0 0 0.73115 1 28550 28550 1.3295 0 1 6444500 76504 3378 51081 52184 89162 89162 -0.07000036361182538 WWQYDERTSRE 11 Unmodified _WWQYDERTSRE_ 0 0 0 nc|ENSG00000118518|Q9NTX7-2|RNF146;ENSG00000118518|ENST00000368314|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 nc|ENSG00000118518|Q9NTX7-2|RNF146 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 778.349609375 2 778.349854 1554.68515 0.22765 0.00017719 -0.74756 -0.00058186 -0.5199 -0.00040467 778.349111594655 52.386 0.56727 51.952 51.649 52.216 -0.43367 52 28 2 0 0 0 0.73115 1 28286 28286 1.3295 0 1 7374200 76505 3378 51081 52184 89163 89163 -0.07000036361182538 WWRFQIGF 8 Unmodified _WWRFQIGF_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7645263671875 2 570.292894 1138.57123 0.51779 0.00029529 1.7461 0.00099581 2.2639 0.0012911 570.2945430157268 55.253 0.19285 54.775 54.712 54.905 -0.47798 10 8 2 0 0 0 8.7369 1 29984 29984 9.3474 1.4373 1 574660 + 76506 23757 51082 52185 89164 89164 0.0074919012522514095 WWRRKYLE 8 Unmodified _WWRRKYLE_ 0 0 0 ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF ENST00000433473.7_1_1:40558092-40558149:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.83642578125 2 618.835457 1235.65636 NaN NaN NaN NaN NaN NaN NaN 95.505 1 95.505 95.005 96.005 0 0 0 0 0.97444 1 52788 52788 0.6015 0.076735 1 76507 13290 51083 52186 89165 89165 0.047959355910279555 WWRRWRARRQP 11 Unmodified _WWRRWRARRQP_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8236083984375 3 551.974781 1652.90251 0.50589 0.00027924 -1.8718 -0.0010332 -1.3659 -0.00075397 551.9737464052793 47.925 0.20357 47.886 47.764 47.967 -0.038643 19 9 3 0 0 0 0.30605 1 25821 25821 0 0 1 3191600 + 76508 26071 51084 52187 89166 89166 0.10217868213430847 WWRRWRARRQP 11 Unmodified _WWRRWRARRQP_ 0 0 0 REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF REV__ENST00000475204.5_1_1:70687068-70687435:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 551.974781 1652.90251 0.6741 0.00037209 -1.9073 -0.0010528 -1.2331 -0.00068067 551.9735905803034 47.955 0.24057 47.955 47.831 48.071 0 0.082558 -0.00016388 NaN 0 25 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4863900 + 76509 26071 51084 52187 0.10217868213430847 WWRWLRRRRR 10 Unmodified _WWRWLRRRRR_ 0 0 0 REV__chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 REV__chr12:54283228-54283827|179|17.75|0.0|20.76|+|1|HNRNPA1,HNRNPA1|2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2284545898438 4 407.492085 1625.93923 -0.14364 -5.8532E-05 -1.2331 -0.00050249 -1.3768 -0.00056102 407.49161376778665 18.886 0.14722 18.892 18.802 18.949 0.0060463 11 7 2 0 0 0 0.24012 1 9610 9610 0 0 1 844890 + 76510 16778 51085 52188 89167 89167 0.15130164829975 WWRWRRARWQP 11 Unmodified _WWRWRRARWQP_ 0 0 0 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 nc|ENSG00000171160|Q8NDC4-2|MORN4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 842.4466552734375 2 842.447634 1682.88072 NaN NaN NaN NaN NaN NaN NaN 54.818 1 54.351 53.851 54.851 -0.46664 0 0 0 0.9435 1 29720 29720 0 0 1 76511 16381 51086 52189 89168 89168 0.06659063464871906 WWRWSWWWLK 10 Unmodified _WWRWSWWWLK_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 810.40625 2 810.406581 1618.79861 NaN NaN NaN NaN NaN NaN NaN 40.444 1 35.915 35.415 36.415 -4.5294 0 0 0 1.0024 1 24154 24154 0.40072 0 1 + 76512 16774 51087 52190 89169 89169 0.013961483331968338 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4501342773438 2 903.446237 1804.87792 NaN NaN NaN NaN NaN NaN NaN 39.633 1 39.633 39.133 40.133 0 0 0 0 0.9435 1 21253 21253 0 0 1 + 76513 16774 51088 52191 89170 89170 0.007677952873336835 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4464721679688 2 903.446237 1804.87792 NaN NaN NaN NaN NaN NaN NaN 56.897 1 56.897 56.397 57.397 0 0 0 0 0.9435 1 31655 31655 0 0 1 + 76514 16774 51088 52191 89171 89171 0.007677952873336835 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4471435546875 2 903.446237 1804.87792 NaN NaN NaN NaN NaN NaN NaN 78.781 1 78.781 78.281 79.281 0 0 0 0 0.9435 1 43771 43771 0 0 1 + 76515 16774 51088 52191 89172 89172 0.007677952873336835 WWRWSWWWLKW 11 Unmodified _WWRWSWWWLKW_ 0 0 0 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 903.4456787109375 2 903.446237 1804.87792 NaN NaN NaN NaN NaN NaN NaN 70.304 1 64.128 63.628 64.628 -6.1757 0 0 0 0.94313 1 45939 45939 0.26902 0.26902 1 + 76516 16774 51088 52191 89173 89173 0.007677952873336835 WWSKCMGWS 9 Unmodified _WWSKCMGWS_ 0 0 0 REV__ENST00000552168.1_1_12:53456565-53457663:+|nuORF REV__ENST00000552168.1_1_12:53456565-53457663:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.8346862792969 3 390.833495 1169.47866 NaN NaN NaN NaN NaN NaN NaN 63.371 1 57.196 56.696 57.696 -6.1757 0 0 0 0.50124 1 40957 40957 10.8 0 1 + 76517 28723 51089 52192 89174 89174 -0.09930398994811185 WWSQYLCM 8 Unmodified _WWSQYLCM_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8274230957031 3 372.826229 1115.45686 NaN NaN NaN NaN NaN NaN NaN 60.543 1 60.054 59.554 60.554 -0.48932 0 0 0 0.97444 1 32970 32970 0.45834 0 1 76518 646 51090 52193 89175 89175 -0.09625203743394195 WWSYYIFWYKQ 11 Unmodified _WWSYYIFWYKQ_ 0 0 0 nc|ENSG00000211804|A0A1B0GX56|TRDV1 nc|ENSG00000211804|A0A1B0GX56|TRDV1 nc|ENSG00000211804|A0A1B0GX56|TRDV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.3927001953125 2 835.395544 1668.77654 NaN NaN NaN NaN NaN NaN NaN 26.587 1 26.587 26.087 27.087 0 0 0 0 0.9435 1 13673 13673 0 0 1 76519 16532 51091 52194 89176 89176 -0.03110120925884985 WWVERNFY 8 Unmodified _WWVERNFY_ 0 0 0 ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF ENST00000295924.11_2_3:156423406-156423454:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 600.28515625 2 600.285266 1198.55598 NaN NaN NaN NaN NaN NaN NaN 94.523 1 88.347 87.847 88.847 -6.1757 0 0 0 0.90769 1 62608 62608 18.135 1.1927 1 76520 11499 51092 52195 89177 89177 -0.03535721462617403 WWVRPKKLL 9 Unmodified _WWVRPKKLL_ 0 0 0 REV__ENSG00000174010|ENST00000328046|KLHL15 REV__ENSG00000174010|ENST00000328046|KLHL15 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 408.9228515625 3 409.257121 1224.74953 1.4043 0.00057471 -0.89748 -0.0003673 0.50681 0.00020742 409.2568531839582 101.12 0.19429 94.943 94.78 94.974 -6.1757 16 10 3 0 0 0 0.21904 1 67767 67767 0.26902 0.033176 1 36390000 + 76521 22764 51093 52196 89178 89178 0.14614860044252964 WWWIWWQWWKL 11 Unmodified _WWWIWWQWWKL_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20221201_MKP_PDAC_01 4 902.4478149414062 2 902.450988 1802.88742 NaN NaN NaN NaN NaN NaN NaN 99.374 1 93.198 92.698 93.698 -6.1757 0 0 0 0.9435 1 66160 66160 0 0 1 76522 77 51094 52197 89179 89179 0.018095635728514026 WWWPQWWLWR 10 Unmodified _WWWPQWWLWR_ 0 0 0 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 815.39892578125 2 815.398756 1628.78296 NaN NaN NaN NaN NaN NaN NaN 87.374 1 87.432 86.932 87.932 0.05822 0 0 0 1.0061 1 48576 48576 0 0 1 + 76523 16775 51095 52198 89180 89180 -0.00628138183833471 WWWRRRRRHRG 11 Unmodified _WWWRRRRRHRG_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 854.474609375 2 854.475049 1706.93555 NaN NaN NaN NaN NaN NaN NaN 72.318 1 72.318 71.818 72.818 0 0 0 0 0.9435 1 40270 40270 0 0 1 76524 12348 51096 52199 89181 89181 0.11035495056103173 WWWRRRRRHRG 11 Unmodified _WWWRRRRRHRG_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.473876953125 2 854.475049 1706.93555 NaN NaN NaN NaN NaN NaN NaN 79.228 1 79.283 78.783 79.783 0.05497 0 0 0 0.9435 1 43770 43770 0 0 1 76525 12348 51096 52199 89182 89182 0.11035495056103173 WWWRRRRRHRG 11 Unmodified _WWWRRRRRHRG_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.47412109375 2 854.475049 1706.93555 NaN NaN NaN NaN NaN NaN NaN 81.713 1 81.773 81.273 82.273 0.059929 0 0 0 0.9435 1 45189 45189 0 0 1 76526 12348 51096 52199 89183 89183 0.11035495056103173 WWWRRRRRHRG 11 Unmodified _WWWRRRRRHRG_ 0 0 0 ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF ENST00000475204.5_1_1:70687068-70687435:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 854.4716186523438 2 854.475049 1706.93555 NaN NaN NaN NaN NaN NaN NaN 96.485 1 96.478 95.978 96.978 -0.007019 0 0 0 0.9435 1 53586 53586 0 0 1 76527 12348 51096 52199 89184 89184 0.11035495056103173 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4327392578125 2 874.43587 1746.85719 NaN NaN NaN NaN NaN NaN NaN 38.984 1 38.984 38.484 39.484 0 0 0 0 0.94165 1 20863 20863 1.3295 1.3295 1 76528 73 51097 52200 89185 89185 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.43798828125 2 874.43587 1746.85719 NaN NaN NaN NaN NaN NaN NaN 59.546 1 59.546 59.046 60.046 0 0 0 0 0.9435 1 33181 33181 0 0 1 76529 73 51097 52200 89186 89186 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.434326171875 2 874.43587 1746.85719 NaN NaN NaN NaN NaN NaN NaN 91.337 1 91.337 90.837 91.837 0 0 0 0 0.9435 1 50515 50515 0 0 1 76530 73 51097 52200 89187 89187 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.9723205566406 4 437.721573 1746.85719 0.26851 0.00011753 -0.31247 -0.00013678 -0.043958 -1.9241E-05 437.7214971899124 15.709 0.2021 15.714 15.594 15.796 0.0057764 58 19 4 0 0 0 0.7453 1 7819 7819 0 0 1 3962500 76531 73 51097 52200 89188 89188 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.7212219238281 4 437.721573 1746.85719 0.38356 0.00016789 -0.99463 -0.00043537 -0.61107 -0.00026748 437.72107854565814 16.85 0.19193 14.293 14.188 14.38 -2.557 118 32 5 0 0 0 0.7453 1 8727 8727 0 0 1 25234000 76532 73 51097 52200 89189 89189 0.013632049076704789 WWWSWRWWKLQ 11 Unmodified _WWWSWRWWKLQ_ 0 0 0 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 chr12:54282611-54283827|179|40.42|0.0|21.95|+|1|HNRNPA1,HNRNPA1|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.6268310546875 3 583.293005 1746.85719 0.22482 0.00013114 -1.4827 -0.00086483 -1.2578 -0.0007337 583.2922554909269 16.846 0.13634 14.29 14.216 14.353 -2.557 35 23 2 0 0 0 0.7453 1 8741 8741 0 0 1 4656500 76533 73 51097 52200 89190 89190 0.013632049076704789 WWWVRAQLH 9 Unmodified _WWWVRAQLH_ 0 0 0 ENST00000429271.1_1_21:28515665-28516046:-|nuORF ENST00000429271.1_1_21:28515665-28516046:-|nuORF ENST00000429271.1_1_21:28515665-28516046:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.8940734863281 3 427.892842 1280.6567 NaN NaN NaN NaN NaN NaN NaN 18.613 1 18.613 18.113 19.113 0 0 0 0 0.85737 1 9265 9265 0.26902 0 1 76534 13218 51098 52201 89191 89191 0.02759355310877254 WWWWIWWQWW 10 Unmodified _WWWWIWWQWW_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.9042358398438 2 874.901131 1747.78771 NaN NaN NaN NaN NaN NaN NaN 78.8 1 78.855 78.355 79.355 0.05497 0 0 0 1.0061 1 43524 43524 0 0 1 76535 77 51099 52202 89192 89192 -0.05627254041087326 WWWWIWWQWW 10 Unmodified _WWWWIWWQWW_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.9033203125 2 874.901131 1747.78771 NaN NaN NaN NaN NaN NaN NaN 107.55 1 107.5 107 108 -0.047607 0 0 0 1.0061 1 59584 59584 0 0 1 76536 77 51099 52202 89193 89193 -0.05627254041087326 WWWWIWWQWW 10 Unmodified _WWWWIWWQWW_ 0 0 0 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 chr12:54282841-54283827|179|13.61|0.0|20.38|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 874.4674072265625 2 874.901131 1747.78771 NaN NaN NaN NaN NaN NaN NaN 108.45 1 108.4 107.9 108.9 -0.047607 0 0 0 1.0061 1 60058 60058 0 0 1 76537 77 51099 52202 89194 89194 -0.05627254041087326 WWWWPQWWLWR 11 Unmodified _WWWWPQWWLWR_ 0 0 0 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4344482421875 2 908.438412 1814.86227 NaN NaN NaN NaN NaN NaN NaN 57.847 1 57.847 57.347 58.347 0 0 0 0 0.9435 1 32197 32197 0 0 1 + 76538 16775 51100 52203 89195 89195 -0.012564912296966213 WWWWPQWWLWR 11 Unmodified _WWWWPQWWLWR_ 0 0 0 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 REV__chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 908.4368896484375 2 908.438412 1814.86227 NaN NaN NaN NaN NaN NaN NaN 72.337 1 72.337 71.837 72.837 0 0 0 0 0.9435 1 40280 40280 0 0 1 + 76539 16775 51100 52203 89196 89196 -0.012564912296966213 WWYRPFQYFEK 11 Unmodified _WWYRPFQYFEK_ 0 0 0 nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 MSMS AL20221201_MKP_PDAC_01 4 825.4008178710938 2 825.398618 1648.78268 NaN NaN NaN NaN NaN NaN NaN 44.947 1 40.095 39.595 40.595 -4.852 0 0 0 0.94201 1 27504 27504 1.0715 0.76443 1 76540 10216 51101 52204 89197 89197 -0.015756026943790857 WWYRWWCVFPW 11 Unmodified _WWYRWWCVFPW_ 0 0 0 REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 857.8947143554688 2 857.892449 1713.77035 NaN NaN NaN NaN NaN NaN NaN 23.524 1 23.545 23.045 24.045 0.021185 0 0 0 0.9435 1 12118 12118 0 0 1 + 76541 26710 51102 52205 89198 89198 -0.057989176383898666 WYADCTSAGR 10 Unmodified _WYADCTSAGR_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1;nc|ENSG00000260314|P22897-2|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.783203125 2 565.240198 1128.46584 -0.21534 -0.00012172 -2.4042 -0.0013589 -2.6195 -0.0014806 565.2386264320509 25.249 0.27761 25.249 25.108 25.386 0 18 13 2 0 0 0 0.23693 1 12976 12976 6.2058 1.4498 1 590510 76542 10828 51103 52206 89199 89199 -0.09325138853364479 WYDALKAV 8 Unmodified _WYDALKAV_ 0 0 0 nc|ENSG00000288591|Q9Y2I9|TBC1D30;nc|ENSG00000288591|Q9Y2I9-3|TBC1D30;ENSG00000111490|ENST00000539867|TBC1D30 nc|ENSG00000288591|Q9Y2I9|TBC1D30 nc|ENSG00000288591|Q9Y2I9|TBC1D30 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2151489257812 2 483.258185 964.501818 NaN NaN NaN NaN NaN NaN NaN 103.34 1 103.29 102.79 103.79 -0.047928 0 0 0 0.97444 1 57389 57389 2.5775 0 1 76543 16625 51104 52207 89200 89200 0.018146863858078177 WYDPKVTRV 9 Unmodified _WYDPKVTRV_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5452575683594 3 388.545108 1162.61349 -0.14284 -5.5499E-05 1.4335 0.00055698 1.2907 0.00050148 388.5456902185706 37.374 0.28521 37.103 36.969 37.254 -0.27133 34 11 4 0 0 0 0.331 1 19617 19617 15.739 13.003 1 7575400 76544 2985 51105 52208 89201 89201 0.03869120742933774 WYDPKVTRV 9 Unmodified _WYDPKVTRV_ 0 0 0 nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1 nc|ENSG00000113643|P54136-2|RARS1 nc|ENSG00000113643|P54136-2|RARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.5454711914062 3 388.545108 1162.61349 2.0124 0.00078189 -1.1147 -0.00043311 0.89766 0.00034878 388.54460282368933 41.776 0.40874 37.168 36.985 37.394 -4.6079 78 25 4 0 0 0 0.49214 1 25198 25198 7.9454 4.3583 1 64851000 76545 2985 51105 52208 89202 89202 0.03869120742933774 WYDRLTLL 8 Unmodified _WYDRLTLL_ 0 0 0 ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF ENSG00000135749|ENST00000258229|PCNX2 ENSG00000135749|ENST00000258229|PCNX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 360.5347290039062 3 360.53432 1078.58113 -0.34768 -0.00012535 1.2075 0.00043534 0.8598 0.00030999 360.5346976684113 34.995 0.22535 34.773 34.669 34.895 -0.2224 22 9 3 0 0 0 0.75262 1 18307 18307 9.3831 2.2814 1 3235300 76546 4736 51106 52209 89203 89203 0.04498333339961391 WYENEQCDM 9 Unmodified _WYENEQCDM_ 0 0 0 REV__ENSG00000131080|ENST00000374719|EDA2R REV__ENSG00000131080|ENST00000374719|EDA2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.21435546875 2 609.215531 1216.41651 0.44415 0.00027058 -1.3431 -0.00081825 -0.89897 -0.00054767 609.2143781410414 73.635 0.30044 73.635 73.485 73.786 0 31 12 4 0 0 0 0.59218 1 40993 40993 1.8442 1.2427 1 863400 + 76547 19768 51107 52210 89204 89204 -0.183042149244784 WYFECLGRM 9 Unmodified _WYFECLGRM_ 0 0 0 REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7 REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.1802368164062 3 402.180783 1203.52052 NaN NaN NaN NaN NaN NaN NaN 7.2153 1 7.2153 6.7153 7.7153 0 0 0 0 0.86004 1 3458 3458 0.26902 0 1 + 76548 29608 51108 52211 89205 89205 -0.07309843306302355 WYFLLCVNY 9 Unmodified _WYFLLCVNY_ 0 0 0 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;nc|ENSG00000101290|O95674-2|CDS2;ENST00000468817.5_1_20:5109393-5167506:+|nuORF;ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2;ENSG00000163624|ENST00000295887|CDS1 ENST00000467923.5_1_20:5107766-5163790:+|nuORF;ENSG00000163624|ENST00000295887|CDS1 ENSG00000163624|ENST00000295887|CDS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7949829101562 2 610.794078 1219.5736 0.1054 6.4379E-05 0.56557 0.00034545 0.67097 0.00040982 610.7942572288281 40.01 0.7205 40.01 39.575 40.295 0 99 35 4 0 0 0 0.48152 1 21556 21556 8.5933 1.304 1 4370100 76549 7031;1940 51109 52212 89206 89206 -0.027401422519687912 WYFRRQHEKRR 11 Unmodified _WYFRRQHEKRR_ 0 0 0 REV__ENSG00000171044|ENST00000416569|XKR6 REV__ENSG00000171044|ENST00000416569|XKR6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 831.447021484375 2 831.447831 1660.88111 NaN NaN NaN NaN NaN NaN NaN 65.33 1 64.846 64.346 65.346 -0.48428 0 0 0 0.9435 1 35654 35654 0 0 1 + 76550 22530 51110 52213 89207 89207 0.07710438394042285 WYFVNALMF 9 Unmodified _WYFVNALMF_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.2909545898438 2 595.788795 1189.56304 -0.021707 -1.2933E-05 -0.31539 -0.00018791 -0.3371 -0.00020084 595.7882859164521 69.772 0.15887 69.293 69.223 69.382 -0.47903 11 6 2 0 0 0 0.19891 1 38141 38141 11.64 2.2929 1 862460 + 76551 17928 51111 52214 89208 89208 -0.024161249064263757 WYFWGETF 8 Unmodified _WYFWGETF_ 0 0 0 ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD ENSG00000099194|ENST00000370355|SCD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.2505493164062 2 568.247818 1134.48108 1.0316 0.00058622 2.5747 0.0014631 3.6063 0.0020493 568.249521425423 80.635 0.22073 80.143 80.006 80.227 -0.49247 25 8 4 0 0 0 0.77907 1 44173 44173 10.183 0.80027 1 2097800 76552 1685 51112 52215 89209 89209 -0.08077903993853397 WYFYIKKLKLN 11 Unmodified _WYFYIKKLKLN_ 0 0 0 REV__ENSG00000165168|ENST00000378588|CYBB REV__ENSG00000165168|ENST00000378588|CYBB MSMS AL20221201_MKP_PDAC_01 4 505.9628601074219 3 505.962262 1514.86496 NaN NaN NaN NaN NaN NaN NaN 0.21595 1 -2.266 -2.766 -1.766 -2.482 0 0 0 0.9435 1 118 118 0 0 1 + 76553 21989 51113 52216 89210 89210 0.12811919384603243 WYGWHFPEL 9 Unmodified _WYGWHFPEL_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.7882690429688 2 617.787641 1233.56073 1.1948 0.00073811 -0.80761 -0.00049893 0.38715 0.00023918 617.7872517028966 91.271 0.38888 91.308 91.088 91.477 0.036507 35 14 3 0 0 0 0.040683 1 50745 50745 64.236 44.979 1 15959000 76554 770 51114 52217 89211 89211 -0.046708373198725894 WYGWHFPEL 9 Unmodified _WYGWHFPEL_ 0 0 0 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 ENSG00000055044|ENST00000264279|NOP58 MULTI-MSMS AL20221201_MKP_PDAC_01 4 617.7877807617188 2 617.787641 1233.56073 0.80153 0.00049518 0.32755 0.00020235 1.1291 0.00069753 617.7876771781555 99.49 0.13704 93.314 93.243 93.38 -6.1757 22 8 3 0 0 0 0.023481 1 66251 66251 77.984 57.531 1 161220000 76555 770 51114 52217 89212 89212 -0.046708373198725894 WYGYHFPEL 9 Unmodified _WYGYHFPEL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2808227539062 2 606.279649 1210.54475 0.54776 0.00033209 -0.43054 -0.00026103 0.11721 7.1065E-05 606.2795433941154 93.742 0.37328 87.567 87.395 87.769 -6.1757 54 21 3 0 0 0 0.023164 2 62151 62011;62151 60.39 34.99 1 18042000 76556 1955 51115 52218 89213;89214 89214 -0.052105435567682434 WYHPRFTI 8 Unmodified _WYHPRFTI_ 0 0 0 nc|ENSG00000184908|P51801-2|CLCNKB;nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA;ENSG00000184908|ENST00000375679|CLCNKB nc|ENSG00000184908|P51801-2|CLCNKB nc|ENSG00000184908|P51801-2|CLCNKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.289794921875 2 560.290351 1118.56615 0.09506 5.3261E-05 0.73158 0.0004099 0.82664 0.00046316 560.2900468587 69.781 0.20084 69.302 69.223 69.424 -0.47903 14 8 2 0 0 0 0.80676 1 38169 38169 2.5775 0 1 864370 76557 9301 51116 52219 89215 89215 0.011608862625962502 WYHWGCHQCHR 11 Unmodified _WYHWGCHQCHR_ 0 0 0 REV__ENST00000533705.5_1_9:86292703-86292778:-|nuORF REV__ENST00000533705.5_1_9:86292703-86292778:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 756.8115234375 2 756.811664 1511.60878 NaN NaN NaN NaN NaN NaN NaN 75.612 1 75.612 75.112 76.112 0 0 0 0 0.9435 1 42056 42056 0 0 1 + 76558 28487 51117 52220 89216 89216 -0.1265640994313344 WYIFMKYLFYY 11 Unmodified _WYIFMKYLFYY_ 0 0 0 ENST00000496524.5_1_2:110889257-110901337:-|nuORF ENST00000496524.5_1_2:110889257-110901337:-|nuORF ENST00000496524.5_1_2:110889257-110901337:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.603515625 3 546.268475 1635.7836 -0.26755 -0.00014616 3.1684 0.0017308 2.9008 0.0015846 546.2704689820838 25.357 0.10223 25.357 25.283 25.386 0 7 4 2 0 0 0 0.74429 1 13000 13000 0.094841 0.094841 1 780220 76559 14371 51118 52221 89217 89217 -0.00886524369639119 WYKLEDVT 8 Unmodified _WYKLEDVT_ 0 0 0 REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.8465270996094 3 351.846564 1052.51786 NaN NaN NaN NaN NaN NaN NaN 0.65493 1 -1.827 -2.327 -1.327 -2.482 0 0 0 0.97444 1 345 345 0.40072 0 1 + 76560 16753 51119 52222 89218 89218 -0.006296521679814759 WYKLEDVT 8 Unmodified _WYKLEDVT_ 0 0 0 REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.84619140625 3 351.846564 1052.51786 NaN NaN NaN NaN NaN NaN NaN 7.3549 1 4.8729 4.3729 5.3729 -2.482 0 0 0 0.97444 1 3712 3712 0.40072 0 1 + 76561 16753 51119 52222 89219 89219 -0.006296521679814759 WYKLEDVT 8 Unmodified _WYKLEDVT_ 0 0 0 REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.8461608886719 3 351.846564 1052.51786 NaN NaN NaN NaN NaN NaN NaN 7.5959 1 5.1139 4.6139 5.6139 -2.482 0 0 0 0.97444 1 3833 3833 0.40072 0 1 + 76562 16753 51119 52222 89220 89220 -0.006296521679814759 WYKLEDVT 8 Unmodified _WYKLEDVT_ 0 0 0 REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.8453674316406 3 351.846564 1052.51786 NaN NaN NaN NaN NaN NaN NaN 8.4718 1 5.9898 5.4898 6.4898 -2.482 0 0 0 0.97444 1 4278 4278 1.4819 0.51963 1 + 76563 16753 51119 52222 89221 89221 -0.006296521679814759 WYKLEDVT 8 Unmodified _WYKLEDVT_ 0 0 0 REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant REV__CALU|p.D95Y|1|0.16|ENSG00000128595|chr7:128754323-128754323|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 351.8462829589844 3 351.846564 1052.51786 NaN NaN NaN NaN NaN NaN NaN 10.065 1 7.5829 7.0829 8.0829 -2.482 0 0 0 0.97444 1 5071 5071 0.40072 0 1 + 76564 16753 51119 52222 89222 89222 -0.006296521679814759 WYKRTRVKR 9 Unmodified _WYKRTRVKR_ 0 0 0 ENST00000473125.5_1_15:34697252-34699017:-|nuORF ENST00000473125.5_1_15:34697252-34699017:-|nuORF ENST00000473125.5_1_15:34697252-34699017:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.8884887695312 2 646.888555 1291.76256 NaN NaN NaN NaN NaN NaN NaN 26.044 1 26.071 25.571 26.571 0.026951 0 0 0 0.8622 1 13500 13500 0 0 1 76565 13919 51120 52223 89223 89223 0.12834691156331246 WYKRVKKKK 9 Unmodified _WYKRVKKKK_ 0 0 0 REV__nc|ENSG00000063244|P26368-2|U2AF2 REV__nc|ENSG00000063244|P26368-2|U2AF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.4046020507812 2 632.40605 1262.79755 -0.57435 -0.00036322 -0.68947 -0.00043602 -1.2638 -0.00079924 632.4053982276031 105.04 0.04422 104.99 104.98 105.03 -0.048737 24 15 2 0 0 0 0.61381 1 58303 58303 0.52476 0.12405 1 2927100 + 76566 17345 51121 52224 89224 89224 0.17665933964303804 WYKSVTFTTY 10 Unmodified _WYKSVTFTTY_ 0 0 0 REV__ENSG00000182533|ENST00000343849|CAV3 REV__ENSG00000182533|ENST00000343849|CAV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2889404296875 2 648.318971 1294.62339 -0.44215 -0.00028666 -0.11864 -7.6915E-05 -0.56079 -0.00036357 648.819997303708 29.423 0.30619 29.423 29.202 29.508 0 33 14 3 0 0 0 0.71123 1 15121 15121 1.6526 0 1 4039500 + 76567 23275 51122 52225 89225 89225 -0.012137360423366772 WYLKIQLEDIK 11 Unmodified _WYLKIQLEDIK_ 0 0 0 ENSG00000160695|ENST00000621676|VPS11;nc|ENSG00000160695|Q9H270|VPS11;ENST00000534551.2_1_11:118947733-118948890:+|nuORF ENSG00000160695|ENST00000621676|VPS11 ENSG00000160695|ENST00000621676|VPS11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 724.9110107421875 2 724.911027 1447.8075 NaN NaN NaN NaN NaN NaN NaN 108.07 1 108.02 107.52 108.52 -0.047607 0 0 0 0.9435 1 59860 59860 0 0 1 76568 6744 51123 52226 89226 89226 0.10151032388353087 WYLNRGVW 8 Unmodified _WYLNRGVW_ 0 0 0 REV__ENSG00000081479|ENST00000649046|LRP2 REV__ENSG00000081479|ENST00000649046|LRP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2826538085938 2 547.282526 1092.5505 NaN NaN NaN NaN NaN NaN NaN 85.275 1 85.275 84.775 85.775 0 0 0 0 0.97444 1 47262 47262 0.79363 0 1 + 76569 17692 51124 52227 89227 89227 0.007925997455686229 WYLRKKPRRGR 11 Unmodified _WYLRKKPRRGR_ 0 0 0 ENST00000597909.5_2_19:53391499-53393579:-|nuORF ENST00000597909.5_2_19:53391499-53393579:-|nuORF ENST00000597909.5_2_19:53391499-53393579:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.9758605957031 3 505.975899 1514.90587 NaN NaN NaN NaN NaN NaN NaN 101.6 1 101.48 100.98 101.98 -0.11613 0 0 0 0.9435 1 55444 55444 0 0 1 76570 15778 51125 52228 89228 89228 0.16901118267423954 WYLYTELRM 9 Unmodified _WYLYTELRM_ 0 0 0 ENSG00000198270|ENST00000552374|TMEM116;ENST00000549537.6_2_12:112371794-112450827:-|nuORF;ENST00000552801.6_1_12:112371805-112450827:-|nuORF;ENST00000548283.6_1_12:112374453-112450904:-|nuORF ENSG00000198270|ENST00000552374|TMEM116 ENSG00000198270|ENST00000552374|TMEM116 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5467834472656 3 425.54612 1273.61653 NaN NaN NaN NaN NaN NaN NaN 37.952 1 37.97 37.47 38.47 0.01704 0 0 0 0.84369 1 20167 20167 1.1933 0 1 76571 10071 51126 52229 89229 89229 -0.009333721945722573 WYMQYLEKRKN 11 Unmodified _WYMQYLEKRKN_ 0 0 0 ENSG00000175727|ENST00000319080|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;MLXIP|p.I787Mfs*30|1|0.12|ENSG00000175727|chr12:122138528-122138528|C/-|frameshift_variant ENSG00000175727|ENST00000319080|MLXIP ENSG00000175727|ENST00000319080|MLXIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 779.8953247070312 2 779.895386 1557.77622 0.17857 0.00013927 -0.029206 -2.2777E-05 0.14936 0.00011649 779.895398276963 85.861 0.31306 85.36 85.207 85.52 -0.5015 32 12 3 0 0 0 0.7453 1 47072 47072 0 0 1 866830 76572 8538 51127 52230 89230 89230 0.019641360825971788 WYMSTLLL 8 Unmodified _WYMSTLLL_ 0 0 0 REV__ENST00000318602.11_1_12:9232294-9232396:-|nuORF REV__ENST00000318602.11_1_12:9232294-9232396:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.7708740234375 2 513.770071 1025.52559 NaN NaN NaN NaN NaN NaN NaN 90.525 1 90.03 89.53 90.53 -0.49457 0 0 0 0.97444 1 49481 49481 2.5775 0 1 + 76573 25484 51128 52231 89231 89231 0.013847838279843927 WYPGKPLKV 9 Unmodified _WYPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.820556640625 2 544.318577 1086.6226 0.35843 0.0001951 -0.0016054 -8.7382E-07 0.35683 0.00019423 544.3182532342565 49.116 0.24909 49.072 48.946 49.195 -0.04369 21 11 2 0 0 0 0.23158 1 26532 26532 20.454 15.698 1 1889500 76574 3395 51129 52232 89232 89232 0.08275514099273096 WYPKWEMPRP 10 Unmodified _WYPKWEMPRP_ 0 0 0 nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2;nc|ENSG00000180481|Q4G1C9-6|GLIPR1L2;ENSG00000180481|ENST00000550916|GLIPR1L2 nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2 nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 695.3402709960938 2 695.342258 1388.66996 NaN NaN NaN NaN NaN NaN NaN 87.611 1 87.107 86.607 87.607 -0.50423 0 0 0 1.0024 1 47923 47923 0.40072 0.050084 1 76575 8906 51130 52233 89233 89233 -0.008825746920592792 WYPNWYCLSF 10 Unmodified _WYPNWYCLSF_ 0 0 0 REV__ENSG00000151233|ENST00000398675|GXYLT1 REV__ENSG00000151233|ENST00000398675|GXYLT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.5374755859375 3 460.202353 1377.58523 -0.2713 -0.00012486 2.3566 0.0010845 2.0853 0.00095967 460.5381701798766 44.273 0.096031 43.957 43.93 44.026 -0.31585 9 6 2 0 0 0 0.6606 1 23624 23624 6.6304 0 1 50223000 + 76576 21057 51131 52234 89234 89234 -0.08845945228654273 WYQDSVYYI 9 Unmodified _WYQDSVYYI_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.78271484375 2 618.782222 1235.54989 0.27393 0.0001695 -1.3944 -0.00086286 -1.1205 -0.00069336 618.782591639863 82.163 0.11179 75.988 75.932 76.044 -6.1757 7 5 2 0 0 0 0.1773 1 53985 53985 25.399 7.2643 1 5353300 76577 3520 51132 52235 89235 89235 -0.0584628448480089 WYQFQELYYWY 11 Unmodified _WYQFQELYYWY_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 844.87548828125 2 844.874642 1687.73473 -0.6671 -0.00056362 1.5865 0.0013404 0.91944 0.00077681 845.3771447652642 32.45 0.21684 32.321 32.199 32.416 -0.12915 22 9 3 0 0 0 0.7453 1 16888 16888 0 0 1 3714100 + 76578 20252 51133 52236 89236 89236 -0.08162721405028606 WYQFQELYYWY 11 Unmodified _WYQFQELYYWY_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.3784790039062 2 844.874642 1687.73473 0.073241 6.188E-05 0.84228 0.00071162 0.91552 0.0007735 844.8750925445859 32.31 0.18241 32.34 32.258 32.44 0.029747 16 7 3 0 0 0 0.7453 1 16953 16953 0 0 1 3043700 + 76579 20252 51133 52236 89237 89237 -0.08162721405028606 WYQFQELYYWY 11 Unmodified _WYQFQELYYWY_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 844.874642 1687.73473 -0.6671 -0.00056362 1.5865 0.0013404 0.91944 0.00077681 845.3771447652642 32.45 0.21684 32.321 32.199 32.416 -0.12915 -0.12345 0.00067036 NaN 0 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3714100 + 76580 20252 51133 52236 -0.08162721405028606 WYQFQELYYWY 11 Unmodified _WYQFQELYYWY_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 844.874642 1687.73473 0.073241 6.188E-05 0.84228 0.00071162 0.91552 0.0007735 844.8750925445859 32.31 0.18241 32.34 32.258 32.44 0.029747 -0.10439 -0.00058726 NaN 0 16 7 3 NaN NaN NaN NaN 0 NaN NaN 0 3043700 + 76581 20252 51133 52236 -0.08162721405028606 WYQFQELYYWY 11 Unmodified _WYQFQELYYWY_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 844.874642 1687.73473 0.95358 0.00080566 0.77817 0.00065745 1.7318 0.0014631 844.8744574592669 36.956 0.096321 32.672 32.585 32.682 -4.2835 0.22784 -0.00069559 NaN 0 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3729800 + 76582 20252 51133 52236 -0.08162721405028606 WYQNSCYYF 9 Unmodified _WYQNSCYYF_ 0 0 0 nc|ENSG00000256660|Q2HXU8-2|CLEC12B;ENSG00000256660|ENST00000338896|CLEC12B nc|ENSG00000256660|Q2HXU8-2|CLEC12B nc|ENSG00000256660|Q2HXU8-2|CLEC12B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.2536010742188 2 637.252774 1272.491 NaN NaN NaN NaN NaN NaN NaN 73.877 1 73.401 72.901 73.901 -0.47588 0 0 0 0.85737 1 40433 40433 0.6015 0 1 76583 10803 51134 52237 89238 89238 -0.13435084050820478 WYQRVYQSL 9 Unmodified _WYQRVYQSL_ 0 0 0 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 ENSG00000126267|ENST00000649813|COX6B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8173828125 2 621.81693 1241.61931 0.69691 0.00043335 0.34657 0.0002155 1.0435 0.00064885 621.8170098615564 49.22 0.22456 49.176 49.07 49.295 -0.04369 26 10 3 0 0 0 0.0004779 1 26587 26587 144.35 113.71 1 3021600 76584 3943 51135 52238 89239 89239 0.008162192546024016 WYQTKFETL 9 Unmodified _WYQTKFETL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.304931640625 2 608.305864 1214.59717 -0.53551 -0.00032575 0.28779 0.00017506 -0.24772 -0.00015069 608.3060511477674 56.023 0.22299 56.023 55.892 56.115 0 24 11 3 0 0 0 0.0082475 1 31128 31128 92.653 56.526 1 7197800 + 76585 199 51136 52239 89240 89240 -0.0015400521381252474 WYQTKFETL 9 Unmodified _WYQTKFETL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.305419921875 2 608.305864 1214.59717 -0.61014 -0.00037115 -0.36113 -0.00021968 -0.97126 -0.00059083 608.3055627759807 56.556 0.34356 56.07 55.882 56.226 -0.48554 105 27 5 0 0 0 0.0087873 2 30647 30647;30752 103.35 72.717 1 545150000 + 76586 199 51136 52239 89241;89242 89241 -0.0015400521381252474 WYQTKFETL 9 Unmodified _WYQTKFETL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3076171875 2 608.305864 1214.59717 -0.20576 -0.00012517 -0.14405 -8.7625E-05 -0.34981 -0.00021279 608.3057456993339 56.234 0.43839 56.166 55.981 56.419 -0.068737 94 22 6 0 0 0 0.0059585 2 30504 30504;30603 114.65 78.522 1 551730000 + 76587 199 51136 52239 89243;89244 89243 -0.0015400521381252474 WYQTKFETL 9 Unmodified _WYQTKFETL_ 0 0 0 ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF ENSG00000135480|ENST00000331817|KRT7 ENSG00000135480|ENST00000331817|KRT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3068237304688 2 608.305864 1214.59717 0.61496 0.00037408 0.44406 0.00027012 1.059 0.00064421 608.3061590634468 62.136 1.7524 55.96 55.674 57.427 -6.1757 314 96 5 0 0 0 1.0053E-06 7 39926 39926;40060;40183;40311;40438;40575;40704 163.04 123.08 1 2312000000 + 76588 199 51136 52239 89245;89246;89247;89248;89249;89250;89251 89245 -0.0015400521381252474 WYRFAEIRYHR 11 Unmodified _WYRFAEIRYHR_ 0 0 0 nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 nc|ENSG00000060339|Q8IX12-2|CCAR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.280517578125 3 532.944265 1595.81096 1.1806 0.00062919 0.40939 0.00021818 1.59 0.00084737 533.2777401176571 94.37 0.86031 88.194 87.732 88.592 -6.1757 99 49 3 0 0 0 0.70147 2 62686 62496;62686 4.1166 3.6621 1 16430000 76589 825 51137 52240 89252;89253 89253 0.03689140005576519 WYRHQWRRRWS 11 Unmodified _WYRHQWRRRWS_ 0 0 0 REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF REV__ENST00000570069.5_1_16:1826945-1827407:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 858.9375 2 858.940173 1715.86579 NaN NaN NaN NaN NaN NaN NaN 108.8 1 108.75 108.25 109.25 -0.047607 0 0 0 0.9435 1 60244 60244 0 0 1 + 76590 28850 51138 52241 89254 89254 0.036495715968612785 WYRLFNTRLSR 11 Unmodified _WYRLFNTRLSR_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2797546386719 3 504.612515 1510.81572 -0.15116 -7.6276E-05 -0.79094 -0.00039912 -0.9421 -0.00047539 504.61241170195575 31.827 0.36672 31.857 31.692 32.059 0.030106 42 14 4 0 0 0 0.74429 1 16782 16782 0.094841 0.011491 1 24643000 + 76591 22514 51139 52242 89255 89255 0.08074024148322678 WYRNMERNWKW 11 Unmodified _WYRNMERNWKW_ 0 0 0 nc|ENSG00000120915|P34913-3|EPHX2;nc|ENSG00000120915|P34913-2|EPHX2;ENSG00000120915|ENST00000521400|EPHX2 nc|ENSG00000120915|P34913-3|EPHX2 nc|ENSG00000120915|P34913-3|EPHX2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 834.8958740234375 2 834.896251 1667.77795 NaN NaN NaN NaN NaN NaN NaN 108.05 1 108 107.5 108.5 -0.047607 0 0 0 0.9435 1 59848 59848 0 0 1 76592 3553 51140 52243 89256 89256 -0.029228101087710456 WYRWRWPQSWR 11 Unmodified _WYRWRWPQSWR_ 0 0 0 REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.923095703125 2 853.9262 1705.83785 -0.54272 -0.00046344 -0.66305 -0.0005662 -1.2058 -0.0010296 853.9253124767816 33.677 0.23513 33.677 33.569 33.804 0 40 14 4 0 0 0 0.7453 1 17658 17658 0 0 1 24145000 + 76593 26303 51141 52244 89257 89257 0.01316248616763005 WYRWRWPQSWR 11 Unmodified _WYRWRWPQSWR_ 0 0 0 REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 854.4274291992188 2 853.9262 1705.83785 0.73863 0.00063073 -0.2957 -0.0002525 0.44293 0.00037823 854.4274119092732 39.09 0.25852 34.639 34.523 34.782 -4.4509 25 16 2 0 0 0 0.7453 1 23170 23170 0 0 1 13687000 + 76594 26303 51141 52244 89258 89258 0.01316248616763005 WYRWRWPQSWR 11 Unmodified _WYRWRWPQSWR_ 0 0 0 REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 853.9262 1705.83785 -0.54272 -0.00046344 -0.66305 -0.0005662 -1.2058 -0.0010296 853.9253124767816 33.677 0.23513 33.677 33.569 33.804 0 0 0 NaN 0 40 14 4 NaN NaN NaN NaN 0 NaN NaN 0 24145000 + 76595 26303 51141 52244 0.01316248616763005 WYSHFGRQFGR 11 Unmodified _WYSHFGRQFGR_ 0 0 0 L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|7|2|sense L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|7|2|sense L1MC1_dup2137|chr3:11202598-11203364:-|2.1258001992785847|0.3234029913481031|2.72|179.0|7|2|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 720.8495483398438 2 720.849627 1439.6847 NaN NaN NaN NaN NaN NaN NaN 23.8 1 23.822 23.322 24.322 0.021185 0 0 0 0.9435 1 12265 12265 0 0 1 76596 15947 51142 52245 89259 89259 -0.017553664997194574 WYSTFWPMEPA 11 Unmodified _WYSTFWPMEPA_ 0 0 0 ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF ENST00000232744.12_1_3:127393265-127394869:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.3107299804688 2 707.810456 1413.60636 0.44512 0.00031506 2.2341 0.0015813 2.6792 0.0018964 707.8122014808898 48.001 0.13609 47.649 47.615 47.751 -0.3526 9 6 2 0 0 0 0.30139 1 25731 25731 5.7319 0.83484 1 2250800 76597 11075 51143 52246 89260 89260 -0.08389979919775215 WYTRRACH 8 Unmodified _WYTRRACH_ 0 0 0 ENST00000530275.2_1_1:39878798-39878897:+|nuORF ENST00000530275.2_1_1:39878798-39878897:+|nuORF ENST00000530275.2_1_1:39878798-39878897:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.760986328125 2 546.761435 1091.50832 NaN NaN NaN NaN NaN NaN NaN 96.53 1 96.53 96.03 97.03 0 0 0 0 0.97444 1 53346 53346 0.79363 0 1 76598 14888 51144 52247 89261 89261 -0.03377698934491491 WYTSESLTLSL 11 Unmodified _WYTSESLTLSL_ 0 0 0 REV__ENST00000545764.1_1_6:160208906-160209185:-|nuORF REV__ENST00000545764.1_1_6:160208906-160209185:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.5255126953125 3 433.887088 1298.63943 NaN NaN NaN NaN NaN NaN NaN 73.477 1 73.001 72.501 73.501 -0.47588 0 0 0 0.94307 1 40211 40211 0.08335 0 1 + 76599 28540 51145 52248 89262 89262 0.0020592540392954106 WYWTPHSFT 9 Unmodified _WYWTPHSFT_ 0 0 0 REV__nc|ENSG00000112038|P35372-15|OPRM1 REV__nc|ENSG00000112038|P35372-15|OPRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.7772216796875 2 612.777274 1223.53999 NaN NaN NaN NaN NaN NaN NaN 12.63 1 12.64 12.14 13.14 0.0096512 0 0 0 0.8622 1 6229 6229 0 0 1 + 76600 18781 51146 52249 89263 89263 -0.06283427699554522 WYYNLHPSKF 10 Unmodified _WYYNLHPSKF_ 0 0 0 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2239379882812 3 452.224146 1353.65061 -0.036589 -1.6547E-05 0.11237 5.0816E-05 0.07578 3.427E-05 452.2242364765293 31.848 0.17045 31.719 31.647 31.818 -0.12915 10 6 2 0 0 0 0.69064 1 16583 16583 1.9064 0 1 1490600 + 76601 24163 51147 52250 89264 89264 -0.012072077113089108 WYYNLHPSKF 10 Unmodified _WYYNLHPSKF_ 0 0 0 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 452.224146 1353.65061 -0.036589 -1.6547E-05 0.11237 5.0816E-05 0.07578 3.427E-05 452.2242364765293 31.848 0.17045 31.719 31.647 31.818 -0.12915 -0.031775 4.1302E-05 NaN 1.9064 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1490600 + 76602 24163 51147 52250 -0.012072077113089108 WYYNLHPSKF 10 Unmodified _WYYNLHPSKF_ 0 0 0 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 REV__nc|ENSG00000204385|Q53GD3-2|SLC44A4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 452.224146 1353.65061 0.13233 5.9842E-05 -0.041494 -1.8764E-05 0.090833 4.1077E-05 452.2243609811743 31.753 0.10788 31.783 31.692 31.8 0.030106 0.031775 -0.00016744 NaN 1.9064 9 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1327500 + 76603 24163 51147 52250 -0.012072077113089108 WYYTEDQADP 10 Unmodified _WYYTEDQADP_ 0 0 0 nc|ENSG00000148702|Q14520-2|HABP2;ENSG00000148702|ENST00000351270|HABP2 nc|ENSG00000148702|Q14520-2|HABP2 nc|ENSG00000148702|Q14520-2|HABP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 429.8446960449219 3 429.843659 1286.50915 0.34615 0.00014879 2.5266 0.001086 2.8727 0.0012348 429.84487000702967 24.676 0.14898 21.793 21.686 21.835 -2.8831 13 7 2 0 0 0 0.71042 1 13464 13464 1.7423 0.14999 1 2313400 76604 5956 51148 52251 89265 89265 -0.12264670595095595 YAAAAAAP 8 Unmodified _YAAAAAAP_ 0 0 0 REV__nc|ENSG00000167281|A6NFN3|RBFOX3 REV__nc|ENSG00000167281|A6NFN3|RBFOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1808776855469 2 353.181946 704.34934 NaN NaN NaN NaN NaN NaN NaN 19.367 1 19.39 18.89 19.89 0.023106 0 0 0 0.97444 1 9760 9760 0.79363 0 1 + 76605 22199 51149 52252 89266 89266 -0.014660892909660106 YAAAGSAYLL 10 Unmodified _YAAAGSAYLL_ 0 0 0 REV__ENSG00000090530|ENST00000319332|P3H2 REV__ENSG00000090530|ENST00000319332|P3H2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2603149414062 2 500.260925 998.507297 0.27097 0.00013556 -1.1997 -0.00060019 -0.92877 -0.00046463 500.2603551463457 71.281 0.17907 70.804 70.747 70.926 -0.47735 13 7 2 0 0 0 0.44373 1 39036 39036 19.257 3.4098 1 612470 + 76606 17860 51150 52253 89267 89267 0.007983651776157785 YAAAQLRQY 9 Unmodified _YAAAQLRQY_ 0 0 0 nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2 nc|ENSG00000117614|O95926-2|SYF2 nc|ENSG00000117614|O95926-2|SYF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.285888671875 2 542.282723 1082.55089 1.1579 0.00062791 2.2322 0.0012105 3.3901 0.0018384 542.2836182170064 95.939 0.30894 89.764 89.584 89.893 -6.1757 31 18 2 0 0 0 0.37804 1 63619 63619 13.508 0.97634 1 13819000 76607 3326 51151 52254 89268 89268 0.012919746747684258 YAACQSHAF 9 Carbamidomethyl (C) _YAAC(Carbamidomethyl (C))QSHAF_ YAAC(1)QSHAF YAAC(42)QSHAF 0 1 0 ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF;ENST00000489739.1_1_9:139685858-139686514:+|nuORF ENSG00000244187|ENST00000290079|TMEM141 ENSG00000244187|ENST00000290079|TMEM141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7237548828125 2 527.724184 1053.43381 -0.072468 -3.8243E-05 -1.7547 -0.00092597 -1.8271 -0.00096421 527.7234304700702 24.939 0.077606 24.939 24.885 24.963 0 12 9 2 0 0 0 0.06294 1 12765 12765 41.84 27.001 1 1787300 76608 10726 51152 52255 89269 89269 949 -0.09076506536507623 YAAGVHSVL 9 Unmodified _YAAGVHSVL_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;ENST00000490487.1_1_7:4829477-4830874:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 458.7481384277344 2 458.747985 915.481417 0.48837 0.00022404 0.24796 0.00011375 0.73633 0.00033779 458.74811677056846 37.726 0.2407 37.726 37.586 37.826 0 21 11 2 0 0 0 0.0086179 1 20088 20088 89.427 53.383 1 3671100 76609 10702 51153 52256 89270 89270 0.020295157259852203 YAAGVHSVL 9 Unmodified _YAAGVHSVL_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;ENST00000490487.1_1_7:4829477-4830874:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 458.7483825683594 2 458.747985 915.481417 -0.095587 -4.385E-05 0.36411 0.00016704 0.26853 0.00012319 458.7481497094241 37.968 0.15881 37.697 37.58 37.739 -0.27133 11 7 2 0 0 0 0.30562 1 19991 19991 16.942 4.4107 1 1218900 76610 10702 51153 52256 89271 89271 0.020295157259852203 YAAGVHSVL 9 Unmodified _YAAGVHSVL_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;ENST00000490487.1_1_7:4829477-4830874:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.748046875 2 458.747985 915.481417 1.114 0.00051105 -0.038444 -1.7636E-05 1.0756 0.00049342 458.74791372314104 42.726 0.33993 38.041 37.869 38.209 -4.6846 37 21 2 0 0 0 0.016184 1 25793 25793 67.344 18.998 1 14183000 76611 10702 51153 52256 89272 89272 0.020295157259852203 YAAIKNDEF 9 Unmodified _YAAIKNDEF_ 0 0 0 nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 nc|ENSG999|O00370|L1_ORF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.7677001953125 2 535.761289 1069.50803 0.4055 0.00021725 -0.13431 -7.196E-05 0.27119 0.00014529 535.7610761139102 46.777 0.64151 41.697 41.444 42.085 -5.0805 486 104 6 0 0 0 0.37804 1 29160 29160 13.508 1.8676 1 4968000000 76612 16660 51154 52257 89273 89273 -0.023948401733377978 YAALNLESF 9 Unmodified _YAALNLESF_ 0 0 0 REV__ENSG00000185666|ENST00000358763|SYN3 REV__ENSG00000185666|ENST00000358763|SYN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2621459960938 2 514.258382 1026.50221 0.46504 0.00023915 0.90924 0.00046758 1.3743 0.00070673 514.2581896900682 71.687 0.36799 71.211 71.047 71.415 -0.47609 34 14 3 0 0 0 0.28047 1 39198 39198 18.135 4.2289 1 1518200 + 76613 23517 51155 52258 89274 89274 -0.009979386849863658 YAANLKNVM 9 Unmodified _YAANLKNVM_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.2683715820312 2 512.268227 1022.5219 0.64802 0.00033196 0.61163 0.00031332 1.2597 0.00064528 512.2686832622932 45.753 0.28094 40.798 40.641 40.922 -4.9549 29 18 2 0 0 0 0.010818 1 28127 28127 78.149 33.742 1 5939000 76614 2211 51156 52259 89275 89275 0.011541140541226014 YAANLKNVM 9 Unmodified _YAANLKNVM_ 0 0 0 nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5 nc|ENSG00000104517|O95071-2|UBR5 nc|ENSG00000104517|O95071-2|UBR5 MSMS AL20221201_MKP_PDAC_01 4 512.2681884765625 2 512.268227 1022.5219 NaN NaN NaN NaN NaN NaN NaN 69.511 1 63.336 62.836 63.836 -6.1757 0 0 0 0.096036 1 45400 45400 44.407 6.2558 1 76615 2211 51156 52259 89276 89276 0.011541140541226014 YAAPHPLQSY 10 Unmodified _YAAPHPLQSY_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7843017578125 2 573.782556 1145.55056 NaN NaN NaN NaN NaN NaN NaN 38.289 1 38.002 37.502 38.502 -0.28687 0 0 0 0.54588 1 20152 20152 24.021 16.731 1 76616 3952 51157 52260 89277 89277 -0.016394450450889053 YAAPHPLQSY 10 Unmodified _YAAPHPLQSY_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7852783203125 2 573.782556 1145.55056 0.76293 0.00043776 2.0594 0.0011816 2.8223 0.0016194 573.7839026173185 43.161 0.22281 38.396 38.225 38.448 -4.7648 24 14 2 0 0 0 8.538E-11 1 26131 26131 157.8 101.62 1 11079000 76617 3952 51157 52260 89278 89278 -0.016394450450889053 YAAPHPLQSY 10 Unmodified _YAAPHPLQSY_ 0 0 0 nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 nc|ENSG00000126464|Q9ULL5-2|PRR12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 573.782556 1145.55056 0.15042 8.6306E-05 1.4307 0.00082093 1.5811 0.00090723 573.7833707849483 38.869 0.17585 38.582 38.475 38.651 -0.28687 0.092971 -0.00029427 NaN 157.8 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 828850 76618 3952 51157 52260 -0.016394450450889053 YAAQASQAL 9 Unmodified _YAAQASQAL_ 0 0 0 ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF ENSG00000118705|ENST00000237530|RPN2 ENSG00000118705|ENST00000237530|RPN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 461.7349243164062 2 461.735074 921.455596 0.56847 0.00026248 -1.1806 -0.0005451 -0.61208 -0.00028262 461.7349922127065 31.229 0.47023 31.229 31.091 31.561 0 31 22 2 0 0 0 0.068777 1 16273 16273 40.449 8.3316 1 1513200 76619 3388 51158 52261 89279 89279 -0.00827378516294175 YAARHIPL 8 Unmodified _YAARHIPL_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7718811035156 2 470.771794 939.529036 0.28532 0.00013432 0.27336 0.00012869 0.55868 0.00026301 470.77198609282294 64.96 0.37778 64.96 64.765 65.143 0 28 17 2 0 0 0 0.80624 1 36190 36190 2.8892 0 1 1298100 + 76620 20848 51159 52262 89280 89280 0.0568521471685699 YAARHIPL 8 Unmodified _YAARHIPL_ 0 0 0 REV__ENSG00000146809|ENST00000451215|ASB15 REV__ENSG00000146809|ENST00000451215|ASB15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 470.771794 939.529036 0.28532 0.00013432 0.27336 0.00012869 0.55868 0.00026301 470.77198609282294 64.96 0.37778 64.96 64.765 65.143 0 0 0 NaN 2.8892 28 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1298100 + 76621 20848 51159 52262 0.0568521471685699 YAATIAINVF 10 Unmodified _YAATIAINVF_ 0 0 0 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 ENSG00000168575|ENST00000520262|SLC20A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7979736328125 2 541.797675 1081.5808 0.43033 0.00023315 0.38494 0.00020856 0.81528 0.00044172 541.7976701874926 72.529 0.28872 72.052 71.878 72.167 -0.47609 26 13 3 0 0 0 0.27276 1 39669 39669 29.082 6.3453 1 1678900 76622 7781 51160 52263 89281 89281 0.04326913620070627 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.250732421875 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 40.907 1 40.907 40.407 41.407 0 0 0 0 0.81193 1 22021 22021 11.495 1.4208 1 76623 9284 51161 52264 89282 89282 -0.1268646113107934 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 627.255126953125 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 33.703 1 29.718 29.218 30.218 -3.9853 0 0 0 0.81193 1 19350 19350 11.495 1.4208 1 76624 9284 51161 52264 89283 89283 -0.1268646113107934 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 627.2552490234375 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 34.626 1 30.531 30.031 31.031 -4.0951 0 0 0 0.63856 1 19988 19988 19.362 4.1135 1 76625 9284 51161 52264 89284 89284 -0.1268646113107934 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 627.2535400390625 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 36.583 1 32.299 31.799 32.799 -4.2835 0 0 0 0.63856 1 21376 21376 19.362 9.288 1 76626 9284 51161 52264 89285 89285 -0.1268646113107934 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 627.2547607421875 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 36.793 1 32.509 32.009 33.009 -4.2835 0 0 0 0.83999 1 21516 21516 10.151 0.076642 1 76627 9284 51161 52264 89286 89286 -0.1268646113107934 YACQYCDAVFA 11 Unmodified _YACQYCDAVFA_ 0 0 0 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 ENSG00000184677|ENST00000375647|ZBTB40 MSMS AL20221201_MKP_PDAC_01 4 627.2544555664062 2 627.251917 1252.48928 NaN NaN NaN NaN NaN NaN NaN 36.985 1 32.702 32.202 33.202 -4.2835 0 0 0 0.83999 1 21653 21653 10.151 0.076642 1 76628 9284 51161 52264 89287 89287 -0.1268646113107934 YACYCPWCY 9 Unmodified _YACYCPWCY_ 0 0 0 ENSG00000186924|ENST00000334680|KRTAP22-1 ENSG00000186924|ENST00000334680|KRTAP22-1 ENSG00000186924|ENST00000334680|KRTAP22-1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.751953125 2 586.205924 1170.39729 0.4848 0.00028419 2.1403 0.0012546 2.6251 0.0015388 586.2074697003065 49.53 0.18431 49.53 49.465 49.649 0 15 7 3 0 0 0 0.21242 1 27324 27324 2.3027 0.4585 1 1402500 76629 9523 51162 52265 89288 89288 -0.18108842749074938 YADDDLIIDF 10 Unmodified _YADDDLIIDF_ 0 0 0 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 ENSG00000137225|ENST00000398776|CAPN11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.5191650390625 3 400.520405 1198.53938 NaN NaN NaN NaN NaN NaN NaN 41.651 1 41.651 41.151 42.151 0 0 0 0 0.93038 1 22490 22490 6.6304 2.2242 1 76630 4915 51163 52266 89289 89289 -0.05194311929903961 YADEMQDVMH 10 Unmodified _YADEMQDVMH_ 0 0 0 nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO;LRP6-PTPRO|1|fusion nc|ENSG00000151490|Q16827-2|PTPRO;LRP6-PTPRO|1|fusion LRP6-PTPRO|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 413.4986572265625 3 413.498729 1237.47436 0.40417 0.00016712 -0.74457 -0.00030788 -0.3404 -0.00014076 413.49858935658233 36.375 0.19827 36.375 36.269 36.467 0 26 9 3 0 0 0 0.67033 1 19295 19295 3.3196 0 1 6092800 76631 6119;15979 51164 52267 89290 89290 -0.13487952999048503 YADEMQDVMH 10 Unmodified _YADEMQDVMH_ 0 0 0 nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO;LRP6-PTPRO|1|fusion nc|ENSG00000151490|Q16827-2|PTPRO;LRP6-PTPRO|1|fusion LRP6-PTPRO|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.7426147460938 2 619.744456 1237.47436 0.75614 0.00046861 -1.4976 -0.00092811 -0.74143 -0.0004595 619.7436203679075 36.377 0.15619 36.377 36.311 36.467 0 10 7 2 0 0 0 0.40136 1 19313 19313 21.537 2.175 1 1812800 76632 6119;15979 51164 52267 89291 89291 -0.13487952999048503 YADFENQGL 9 Unmodified _YADFENQGL_ 0 0 0 REV__ENST00000405201.5_1_12:124808981-124809239:-|nuORF REV__ENST00000405201.5_1_12:124808981-124809239:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 528.7557983398438 2 528.735271 1055.45599 NaN NaN NaN NaN NaN NaN NaN 84.78 1 78.604 78.104 79.104 -6.1757 0 0 0 0.6306 1 55797 55797 11.64 0.81637 1 + 76633 26643 51165 52268 89292 89292 -0.06952003587070976 YADLSLLNP 9 Unmodified _YADLSLLNP_ 0 0 0 REV__ENSG00000177239|ENST00000371589|MAN1B1 REV__ENSG00000177239|ENST00000371589|MAN1B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2744445800781 2 503.266207 1004.51786 -0.40893 -0.0002058 0.4744 0.00023875 0.065471 3.2949E-05 503.26619381829767 76.555 0.86626 76.076 75.74 76.606 -0.47945 190 46 6 0 0 0 0.14602 1 42096 42096 28.487 1.6032 1 136020000 + 76634 22973 51166 52269 89293 89293 0.015783478320372524 YADPSILYI 9 Unmodified _YADPSILYI_ 0 0 0 nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9;ENST00000490851.5_1_7:18832955-19035682:+|nuORF;nc|ENSG00000048052|Q9UKV0-4|HDAC9 nc|ENSG00000048052|Q9UKV0-2|HDAC9 nc|ENSG00000048052|Q9UKV0-2|HDAC9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.77734375 2 527.776408 1053.53826 1.0436 0.00055081 0.83722 0.00044187 1.8809 0.00099267 527.7767511174368 88.763 0.78391 82.587 82.292 83.076 -6.1757 116 37 4 0 0 0 0.30202 1 58589 58589 24.674 0 1 136370000 76635 697 51167 52270 89294 89294 0.01363518491848481 YADPVNAHY 9 Unmodified _YADPVNAHY_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.787353515625 2 525.237981 1048.46141 -0.87512 -0.00045964 -0.43363 -0.00022776 -1.3087 -0.0006874 525.2375543893528 32.383 0.2297 32.383 32.242 32.472 0 30 13 3 0 0 0 0.18882 1 16880 16880 15.847 5.6638 1 22481000 76636 3421 51168 52271 89295 89295 -0.060882800046329066 YADPVNAHY 9 Unmodified _YADPVNAHY_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2377319335938 2 525.237981 1048.46141 1.2738 0.00066903 -0.067504 -3.5456E-05 1.2063 0.00063357 525.2381202887499 37.217 0.4016 32.934 32.736 33.137 -4.2835 60 24 3 0 0 0 0.08691 1 21825 21825 36.127 24.487 1 27289000 76637 3421 51168 52271 89296 89296 -0.060882800046329066 YADPYDSYRR 10 Unmodified _YADPYDSYRR_ 0 0 0 REV__ENSG00000198804|ENST00000361624|MT-CO1 REV__ENSG00000198804|ENST00000361624|MT-CO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.797607421875 2 653.296559 1304.57856 0.45364 0.00029636 -0.50063 -0.00032706 -0.046989 -3.0698E-05 653.2970540788422 87.14 0.19191 86.635 86.516 86.708 -0.50423 14 7 3 0 0 0 0.70951 1 47651 47651 1.8442 0 1 476140 + 76638 24064 51169 52272 89297 89297 -0.061541668556856166 YADRQRRHRTY 11 Unmodified _YADRQRRHRTY_ 0 0 0 REV__ENST00000418428.6_2_7:12568628-12580546:+|nuORF REV__ENST00000418428.6_2_7:12568628-12580546:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 761.392822265625 2 761.392722 1520.77089 NaN NaN NaN NaN NaN NaN NaN 50.286 1 49.894 49.394 50.394 -0.3923 0 0 0 0.94165 1 27077 27077 1.3295 0 1 + 76639 24392 51170 52273 89298 89298 0.03133593335041951 YADTPYLVL 9 Unmodified _YADTPYLVL_ 0 0 0 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.77734375 2 527.776408 1053.53826 0.70685 0.00037306 -0.86108 -0.00045446 -0.15422 -8.1395E-05 527.7758132225946 81.177 0.66086 80.684 80.356 81.017 -0.49247 110 36 4 0 0 0 0.53557 1 44572 44572 8.5933 3.3626 1 24075000 + 76640 19358 51171 52274 89299 89299 0.013635184918257437 YADVGGKQF 9 Unmodified _YADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.7422790527344 2 492.742899 983.471246 -0.62887 -0.00030987 -0.068385 -3.3696E-05 -0.69725 -0.00034357 492.74273863665525 30.149 0.20612 30.149 30.036 30.243 0 16 9 2 0 0 0 0.011968 1 15634 15634 74.929 38.885 1 3766200 76641 8928 51172 52275 89300 89300 -0.021150919992237505 YADVGGKQF 9 Unmodified _YADVGGKQF_ 0 0 0 ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4;ENST00000460616.5_1_X:153061851-153063636:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF ENST00000485612.5_1_X:153061851-153063885:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 492.7430114746094 2 492.742899 983.471246 NaN NaN NaN NaN NaN NaN NaN 34.152 1 30.166 29.666 30.666 -3.9853 0 0 0 0.01231 1 19660 19660 88.954 46.859 1 76642 8928 51172 52275 89301 89301 -0.021150919992237505 YADVTLRDVHT 11 Unmodified _YADVTLRDVHT_ 0 0 0 REV__ENSG00000171435|ENST00000339824|KSR2 REV__ENSG00000171435|ENST00000339824|KSR2 MSMS AL20221201_MKP_PDAC_01 4 645.3269653320312 2 645.327859 1288.64116 NaN NaN NaN NaN NaN NaN NaN 100.74 1 94.563 94.063 95.063 -6.1757 0 0 0 0.85601 1 67444 67444 9.3831 0 1 + 76643 22559 51173 52276 89302 89302 0.008389792125399254 YAEAVQLL 8 Unmodified _YAEAVQLL_ 0 0 0 ENSG00000196659|ENST00000408939|TTC30B;ENSG00000197557|ENST00000355689|TTC30A ENSG00000196659|ENST00000408939|TTC30B ENSG00000196659|ENST00000408939|TTC30B MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.7506713867188 2 453.750193 905.485833 1.098 0.0004982 -0.09552 -4.3342E-05 1.0024 0.00045486 453.7501881723492 87.448 0.45879 81.272 81.036 81.495 -6.1757 56 24 3 0 0 0 0.72953 1 57811 57811 14.582 1.0738 1 44187000 76644 9855 51174 52277 89303 89303 0.029309801489034726 YAEEKDSYIC 10 Unmodified _YAEEKDSYIC_ 0 0 0 ENSG00000164197|ENST00000389100|RNF180 ENSG00000164197|ENST00000389100|RNF180 ENSG00000164197|ENST00000389100|RNF180 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7608032226562 2 610.760629 1219.5067 0.14593 8.9126E-05 -3.3749 -0.0020612 -3.2289 -0.0019721 610.757885781573 80.93 0.49988 80.93 80.717 81.217 0 49 24 3 0 0 0 0.70895 1 44890 44890 0.40072 0 1 514960 76645 7162 51175 52278 89304 89304 -0.09426842324387508 YAEENECFF 9 Unmodified _YAEENECFF_ 0 0 0 nc|ENSG00000184226|Q9HC56-2|PCDH9;ENSG00000184226|ENST00000377865|PCDH9 nc|ENSG00000184226|Q9HC56-2|PCDH9 nc|ENSG00000184226|Q9HC56-2|PCDH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2218017578125 2 576.221139 1150.42773 0.68566 0.00039509 0.11328 6.5274E-05 0.79894 0.00046037 576.2207181758956 82.743 0.32739 82.246 82.03 82.357 -0.49751 30 13 3 0 0 0 0.53666 1 45252 45252 5.2307 0.47466 1 1057700 76646 9233 51176 52279 89305 89305 -0.14147069558703151 YAEKLHRL 8 Unmodified _YAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2952270507812 2 515.295633 1028.57671 -0.07987 -4.1157E-05 0.18746 9.6599E-05 0.10759 5.5442E-05 515.2956848484909 25.228 0.26688 22.345 22.282 22.549 -2.8831 26 16 2 0 0 0 0.12533 1 13794 13794 92.491 7.2194 1 6976100 76647 6155;16276;16275;14741 51177 52280 89306 89306 0.06356868917032443 YAEKLHRL 8 Unmodified _YAEKLHRL_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-13|DST nc|ENSG00000151914|Q03001|DST MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 515.295633 1028.57671 -0.16392 -8.447E-05 0.3545 0.00018267 0.19058 9.8205E-05 515.7970731175985 22.527 0.14634 22.527 22.444 22.59 0 0.091034 0.00013722 NaN 92.491 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 373420 76648 6155;16276;16275;14741 51177 52280 0.06356868917032443 YAEPGDCYE 9 Unmodified _YAEPGDCYE_ 0 0 0 nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I nc|ENSG00000100346|Q9P0X4-4|CACNA1I nc|ENSG00000100346|Q9P0X4-4|CACNA1I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.6929321289062 2 523.692215 1045.36988 0.39019 0.00020434 1.0356 0.00054236 1.4258 0.0007467 523.6926699313609 71.319 0.38665 70.842 70.659 71.045 -0.47735 37 16 3 0 0 0 0.39863 1 39005 39005 12.532 0.89125 1 2707900 76649 1801 51178 52281 89307 89307 -0.15099331484134382 YAEPGSLM 8 Unmodified _YAEPGSLM_ 0 0 0 REV__nc|ENSG00000171608|O00329-2|PIK3CD REV__nc|ENSG00000171608|O00329-2|PIK3CD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.391357421875 1 867.391681 866.384405 0.31603 0.00027412 -0.61784 -0.00053591 -0.30182 -0.00026179 867.3913918612552 59.431 0.33611 59.431 59.241 59.577 0 37 14 4 0 0 0 0.28922 1 33062 33062 56.541 6.8724 1 7728600 + 76650 22582 51179 52282 89308 89308 -0.05413214545296796 YAEPGSLM 8 Unmodified _YAEPGSLM_ 0 0 0 REV__nc|ENSG00000171608|O00329-2|PIK3CD REV__nc|ENSG00000171608|O00329-2|PIK3CD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.3916625976562 1 867.391681 866.384405 0.40233 0.00034898 -0.91107 -0.00079025 -0.50873 -0.00044127 867.3909990250617 59.74 0.34684 59.74 59.532 59.879 0 37 15 3 0 0 0 0.28922 1 33278 33278 56.541 3.8482 1 7551300 + 76651 22582 51179 52282 89309 89309 -0.05413214545296796 YAEPIDTIF 9 Unmodified _YAEPIDTIF_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion;ENST00000407916.2_1_7:55004007-55004829:+|nuORF ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7658081054688 2 534.76604 1067.51753 0.85129 0.00045524 1.6933 0.00090549 2.5445 0.0013607 534.7663563053837 93.747 0.33699 87.572 87.451 87.788 -6.1757 26 19 2 0 0 0 0.078417 1 62056 62056 38.151 2.107 1 20343000 76652 35;12948 51180 52283 89310 89310 -0.013530718878200787 YAEQIPVTF 9 Unmodified _YAEQIPVTF_ 0 0 0 nc|ENSG00000127325|Q8N1M1-1|BEST3;ENSG00000127325|ENST00000330891|BEST3 nc|ENSG00000127325|Q8N1M1-1|BEST3 nc|ENSG00000127325|Q8N1M1-1|BEST3 MSMS AL20221201_MKP_PDAC_01 4 534.2736206054688 2 534.274032 1066.53351 NaN NaN NaN NaN NaN NaN NaN 52.163 1 46.429 45.929 46.929 -5.7345 0 0 0 0.36957 1 32912 32912 21.537 3.3906 1 76653 3997 51181 52284 89311 89311 0.0029063434908493946 YAETRKLLM 9 Unmodified _YAETRKLLM_ 0 0 0 REV__ENST00000366630.5_1_1:232651237-232651315:-|nuORF REV__ENST00000366630.5_1_1:232651237-232651315:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8766479492188 3 375.542598 1123.60597 NaN NaN NaN NaN NaN NaN NaN 17.04 1 17.041 16.541 17.541 0.0010548 0 0 0 0.85261 1 8444 8444 1.1933 0 1 + 76654 25960 51182 52285 89312 89312 0.04910645150994242 YAFDEYDMI 9 Unmodified _YAFDEYDMI_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.740234375 2 583.739165 1165.46378 0.25238 0.00014732 2.1267 0.0012415 2.3791 0.0013888 583.7403673928325 100.4 0.11271 100.26 100.19 100.3 -0.13293 6 3 2 0 0 0 0.58466 1 54818 54818 2.3027 0.24298 1 5907600 + 76655 24477 51183 52286 89313 89313 -0.11233612381829516 YAFDEYDMI 9 Unmodified _YAFDEYDMI_ 0 0 0 REV__ENSG00000243811|ENST00000216099|APOBEC3D REV__ENSG00000243811|ENST00000216099|APOBEC3D MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 583.739165 1165.46378 0.25238 0.00014732 2.1267 0.0012415 2.3791 0.0013888 583.7403673928325 100.4 0.11271 100.26 100.19 100.3 -0.13293 0 0 NaN 2.3027 6 3 2 NaN NaN NaN NaN 0 NaN NaN 0 5907600 + 76656 24477 51183 52286 -0.11233612381829516 YAFFPGELSM 10 Unmodified _YAFFPGELSM_ 0 0 0 REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF REV__ENST00000593460.1_1_19:18120971-18123772:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.26611328125 2 581.267893 1160.52123 NaN NaN NaN NaN NaN NaN NaN 46.442 1 41.361 40.861 41.861 -5.0805 0 0 0 0.7417 1 28683 28683 14.838 0.93222 1 + 76657 18443 51184 52287 89314 89314 -0.0526072538561948 YAFKFFDTY 9 Unmodified _YAFKFFDTY_ 0 0 0 nc|ENSG00000144554|Q9BXW9-3|FANCD2;ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 nc|ENSG00000144554|Q9BXW9-3|FANCD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.2822875976562 2 601.281857 1200.54916 0.075837 4.5599E-05 0.92149 0.00055407 0.99732 0.00059967 601.2820150377261 75.533 0.27563 75.581 75.474 75.75 0.047943 23 12 2 0 0 0 0.06294 1 41659 41659 41.84 22.583 1 2136700 76658 5618 51185 52288 89315 89315 -0.04309079133849991 YAFKRTPKL 9 Unmodified _YAFKRTPKL_ 0 0 0 REV__ENSG00000142541|ENST00000391857|RPL13A REV__ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 375.5611572265625 3 375.225598 1122.65496 1.092 0.00040976 0.2529 9.4896E-05 1.3449 0.00050465 375.2256475710872 29.691 0.34853 26.389 26.257 26.606 -3.3016 27 18 3 0 0 0 0.18144 1 16709 16709 24.991 3.4008 1 59679000 + 76659 20579 51186 52289 89316 89316 0.09854301502264207 YAFNILAEL 9 Unmodified _YAFNILAEL_ 0 0 0 REV__ENST00000461084.5_1_3:47324437-47378284:+|nuORF REV__ENST00000461084.5_1_3:47324437-47378284:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 527.284912109375 2 527.2844 1052.55425 NaN NaN NaN NaN NaN NaN NaN 82.185 1 76.009 75.509 76.509 -6.1757 0 0 0 0.12337 1 53979 53979 39.957 0.0076237 1 + 76660 18924 51187 52290 89317 89317 0.030072247287762366 YAFNITRD 8 Unmodified _YAFNITRD_ 0 0 0 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 ENSG00000106404|ENST00000308344|CLDN15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1000.664367675781 1 999.489421 998.482145 1.6612 0.0016603 1.2675 0.0012668 2.9287 0.0029272 999.4939081339194 92.131 0.19125 92.161 91.993 92.184 0.03019 8 6 2 0 0 0 0.77907 1 51171 51171 10.183 0 1 3562800 76661 2427 51188 52291 89318 89318 -0.017156896249503006 YAFPKEFPY 9 Unmodified _YAFPKEFPY_ 0 0 0 ENSG00000112237|ENST00000520429|CCNC;ENST00000523639.5_1_6:99998829-100016472:-|nuORF;nc|ENSG00000112237|P24863-2|CCNC ENSG00000112237|ENST00000520429|CCNC ENSG00000112237|ENST00000520429|CCNC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8018188476562 2 581.2844 1160.55425 0.55126 0.00032044 -1.4887 -0.00086538 -0.93748 -0.00054494 581.2837543554143 64.59 0.25959 64.104 63.949 64.208 -0.48512 20 11 2 0 0 0 0.18882 1 35207 35207 15.847 5.7733 1 1891100 76662 2871 51189 52292 89319 89319 -0.019607752712545334 YAFQDDRYLY 10 Unmodified _YAFQDDRYLY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8104858398438 2 677.309135 1352.60372 0.22307 0.00015109 -0.54442 -0.00036874 -0.32135 -0.00021765 677.3084308339727 54.857 0.2451 54.857 54.741 54.986 0 25 10 3 0 0 0 0.035244 1 30459 30459 65.474 42.737 1 4945900 76663 4591;967 51190 52293 89320 89320 -0.0584811205310416 YAFQDDRYLY 10 Unmodified _YAFQDDRYLY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 677.3087158203125 2 677.309135 1352.60372 0.42169 0.00028562 0.97356 0.0006594 1.3953 0.00094502 677.3097486061117 55.563 0.35298 55.085 54.927 55.279 -0.47798 40 16 3 0 0 0 0.13008 2 30103 30103;30208 42.312 31.513 1 4641200 76664 4591;967 51190 52293 89321;89322 89321 -0.0584811205310416 YAFQDDRYLY 10 Unmodified _YAFQDDRYLY_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2;ENST00000582445.1_1_18:18625251-18629157:-|nuORF;ENSG00000067900|ENST00000399799|ROCK1;ROCK1|p.I383Ffs*13|1|0.17|ENSG00000067900|chr18:21028841-21028841|A/-|frameshift_variant ENSG00000134318|ENST00000315872|ROCK2;ENSG00000067900|ENST00000399799|ROCK1 ENSG00000134318|ENST00000315872|ROCK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 677.310302734375 2 677.309135 1352.60372 1.1997 0.00081258 1.0431 0.0007065 2.2428 0.0015191 677.3097352679972 61.603 0.38466 55.428 55.269 55.654 -6.1757 39 19 3 0 0 0 0.0055438 2 39690 39690;39824 96.936 67.095 1 25959000 76665 4591;967 51190 52293 89323;89324 89323 -0.0584811205310416 YAFQDENHL 9 Unmodified _YAFQDENHL_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.755126953125 2 568.753995 1135.49344 0.27469 0.00015623 0.50646 0.00028805 0.78116 0.00044429 568.7541873057979 40.008 0.19684 40.008 39.892 40.089 0 17 9 2 0 0 0 0.009483 1 21491 21491 81.89 47.788 1 3856400 76666 10141 51191 52294 89325 89325 -0.06888912321483076 YAFSHAFIY 9 Unmodified _YAFSHAFIY_ 0 0 0 nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.7734985351562 2 559.768917 1117.52328 4.2898 0.0024013 0.57744 0.00032323 4.8672 0.0027245 559.7694053106237 98.546 0.36708 98.518 98.299 98.666 -0.028282 31 13 3 0 0 0 0.28047 1 54727 54727 18.135 9.3896 1 4299700 76667 286 51192 52295 89326 89326 -0.030779285854805494 YAFSLDSKY 9 Unmodified _YAFSLDSKY_ 0 0 0 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 ENSG00000108021|ENST00000695737|TASOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2615356445312 2 547.263665 1092.51278 0.40405 0.00022112 -0.96464 -0.00052791 -0.5606 -0.00030679 547.2629653091371 58.167 0.4605 52.14 51.923 52.383 -6.0275 42 24 2 0 0 0 0.010301 2 37203 37203;37332 79.596 35.82 1 40350000 76668 2541 51193 52296 89327;89328 89327 -0.029779560305769337 YAFSNFYY 8 Unmodified _YAFSNFYY_ 0 0 0 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 ENSG00000188833|ENST00000371506|ENTPD8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 537.229248046875 2 537.732 1073.44945 1.0358 0.00055696 -0.27852 -0.00014977 0.75724 0.00040719 537.7312545787381 60.861 0.38439 54.713 54.574 54.959 -6.1478 28 20 2 0 0 0 8.7369 1 39326 39326 14.582 0 1 23593000 76669 9702 51194 52297 89329 89329 -0.08433896747806102 YAGAVRRRLA 10 Unmodified _YAGAVRRRLA_ 0 0 0 ENST00000455575.1_1_7:86848849-86849557:-|nuORF ENST00000455575.1_1_7:86848849-86849557:-|nuORF ENST00000455575.1_1_7:86848849-86849557:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.7991943359375 2 566.838531 1131.66251 0.89237 0.00050583 3.3397 0.001893 4.232 0.0023989 566.8403879370778 70.354 0.21397 70.39 70.312 70.526 0.035515 12 9 2 0 0 0 0.23566 1 38797 38797 7.2892 0 1 865130 76670 13588 51195 52298 89330 89330 0.10194453822577998 YAGEFEHVF 9 Unmodified _YAGEFEHVF_ 0 0 0 ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH ENSG00000178814|ENST00000618853|OPLAH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7481689453125 2 549.748182 1097.48181 1.1042 0.00060705 4.2589 0.0023413 5.3632 0.0029484 549.7477885507875 54.53 0.26562 54.53 54.398 54.664 0 22 11 3 0 0 0 0.25297 1 30278 30278 19.439 1.304 1 1117700 76671 8777 51196 52299 89331 89331 -0.06303109344821678 YAGEGIYSL 9 Unmodified _YAGEGIYSL_ 0 0 0 REV__ENSG00000100030|ENST00000215832|MAPK1 REV__ENSG00000100030|ENST00000215832|MAPK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.7358093261719 2 486.737283 971.460012 NaN NaN NaN NaN NaN NaN NaN 70.212 1 70.212 69.712 70.712 0 0 0 0 0.46757 1 39122 39122 16.942 0 1 + 76672 18005 51197 52300 89332 89332 -0.026859140933765957 YAGGLSSAY 9 Unmodified _YAGGLSSAY_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 888.4114379882812 1 888.409774 887.402498 0.030215 2.6844E-05 0.59559 0.00052913 0.62581 0.00055597 888.410191996376 37.876 0.36497 37.876 37.724 38.089 0 47 17 4 0 0 0 0.0089973 2 20241 20132;20241 86.121 35.266 1 22672000 + 76673 165;150 51198 52301 89333;89334 89334 -0.04570756298960532 YAGGLSSAY 9 Unmodified _YAGGLSSAY_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000489121.1_1_3:137820322-137820643:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;CON__REFSEQ:XP_092267;ENST00000425226.1_1_2:203705056-203705395:-|nuORF;CON__H-INV:HIT000292931 CON__P05787;CON__H-INV:HIT000292931 CON__P05787 MULTI-MSMS AL20221201_MKP_PDAC_01 4 888.4092407226562 1 888.409774 887.402498 -0.16307 -0.00014487 0.42697 0.00037932 0.2639 0.00023445 888.410057180134 44.264 0.44238 39.412 39.172 39.614 -4.852 74 31 3 0 0 0 0.0081063 3 27005 26873;27005;27138 93.883 39.11 1 44144000 + 76674 165;150 51198 52301 89335;89336;89337 89336 -0.04570756298960532 YAGGNAQLIHP 11 Unmodified _YAGGNAQLIHP_ 0 0 0 REV__HOXB3|p.V333I|1|0.08|ENSG00000120093|chr17:48550633-48550633|C/T|missense_variant REV__HOXB3|p.V333I|1|0.08|ENSG00000120093|chr17:48550633-48550633|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7937622070312 2 570.793455 1139.57236 0.67692 0.00038638 -0.2429 -0.00013865 0.43401 0.00024773 570.7932981575459 58.346 0.33625 58.285 58.116 58.452 -0.060722 64 16 5 0 0 0 0.37677 1 31831 31831 22.736 2.3217 1 56442000 + 76675 29384 51199 52302 89338 89338 0.008153597034606719 YAGKMEATTAG 11 Unmodified _YAGKMEATTAG_ 0 0 0 ENST00000492819.1_1_3:47018111-47023490:-|nuORF ENST00000492819.1_1_3:47018111-47023490:-|nuORF ENST00000492819.1_1_3:47018111-47023490:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 367.17529296875 3 367.174463 1098.50156 NaN NaN NaN NaN NaN NaN NaN 67.507 1 61.332 60.832 61.832 -6.1757 0 0 0 0.93224 1 43977 43977 2.6312 0.13275 1 76676 14298 51200 52303 89339 89339 -0.04375101396362879 YAGKNAVAY 9 Unmodified _YAGKNAVAY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14 ENSG00000173193|ENST00000474629|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7467956542969 2 478.745442 955.476331 -0.14968 -7.1661E-05 0.75102 0.00035955 0.60134 0.00028789 478.7457277933882 22.635 0.26778 22.635 22.486 22.754 0 39 12 4 0 0 0 0.06187 1 11481 11481 42.095 9.9776 1 7089300 76677 8296 51201 52304 89340 89340 -0.003187881366329748 YAGKNAVAY 9 Unmodified _YAGKNAVAY_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14;nc|ENSG00000173193|Q460N5-5|PARP14 ENSG00000173193|ENST00000474629|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 478.745442 955.476331 -0.028384 -1.3589E-05 1.7848 0.00085444 1.7564 0.00084085 478.74629684458284 25.442 0.30581 22.559 22.425 22.73 -2.8831 -0.038154 0.00046073 NaN 42.095 29 16 2 NaN NaN NaN NaN 0 NaN NaN 0 19735000 76678 8296 51201 52304 -0.003187881366329748 YAGNKSKK 8 Unmodified _YAGNKSKK_ 0 0 0 REV__nc|ENSG00000085224|P46100-6|ATRX REV__nc|ENSG00000085224|P46100-6|ATRX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 448.2538146972656 2 448.253434 894.492316 0.83151 0.00037273 1.7123 0.00076753 2.5438 0.0011403 448.253917225356 40.616 0.39308 40.621 40.424 40.817 0.0050545 23 18 2 0 0 0 0.80143 1 21741 21741 5.7604 2.8712 1 5752400 + 76679 17744 51202 52305 89341 89341 0.04084918100284085 YAGPCLPIY 9 Unmodified _YAGPCLPIY_ 0 0 0 REV__ENSG00000196924|ENST00000369850|FLNA REV__ENSG00000196924|ENST00000369850|FLNA MSMS AL20221201_MKP_PDAC_01 4 498.7457275390625 2 498.746596 995.478639 NaN NaN NaN NaN NaN NaN NaN 45.912 1 40.957 40.457 41.457 -4.9549 0 0 0 0.15264 1 28273 28273 36.466 0.42194 1 + 76680 23882 51203 52306 89342 89342 -0.019280757231854295 YAGPFSKNCNL 11 Unmodified _YAGPFSKNCNL_ 0 0 0 nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5 nc|ENSG00000005189|Q96IC2-2|REXO5 nc|ENSG00000005189|Q96IC2-2|REXO5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.2880859375 2 607.287148 1212.55974 0.68127 0.00041373 1.6394 0.00099557 2.3207 0.0014093 607.2876305280861 47.521 0.17542 47.482 47.385 47.561 -0.038643 10 7 2 0 0 0 0.50515 1 25621 25621 16.149 0 1 1168600 76681 301 51204 52307 89343 89343 -0.038034197510569356 YAGPNFAC 8 Unmodified _YAGPNFAC_ 0 0 0 ENST00000274712.7_1_5:140085358-140085403:+|nuORF ENST00000274712.7_1_5:140085358-140085403:+|nuORF ENST00000274712.7_1_5:140085358-140085403:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.6767272949219 2 421.678714 841.342874 NaN NaN NaN NaN NaN NaN NaN 51.981 1 51.981 51.481 52.481 0 0 0 0 0.97348 1 28745 28745 5.7604 0 1 76682 11387 51205 52308 89344 89344 -0.08414350513976387 YAGQLFLDKI 10 Unmodified _YAGQLFLDKI_ 0 0 0 REV__ENSG00000176978|ENST00000371579|DPP7 REV__ENSG00000176978|ENST00000371579|DPP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.8849487304688 3 389.88513 1166.63356 -0.19284 -7.5186E-05 0.46684 0.00018202 0.274 0.00010683 389.88542276223444 56.375 0.18817 56.307 56.212 56.4 -0.068737 15 9 2 0 0 0 0.18021 1 30652 30652 24.882 6.1603 1 5382200 + 76683 22955 51206 52309 89345 89345 0.05690871682895704 YAGTASGPNI 10 Unmodified _YAGTASGPNI_ 0 0 0 REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF REV__ENST00000548259.1_1_12:110930799-110939856:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 475.7334899902344 2 475.732532 949.45051 0.55991 0.00026637 0.50582 0.00024063 1.0657 0.000507 475.7330529960372 68.461 0.27132 67.98 67.804 68.076 -0.48071 18 11 2 0 0 0 0.44373 1 37412 37412 19.257 1.122 1 1177500 + 76684 18739 51207 52310 89346 89346 -0.026236823788963193 YAGVASHF 8 Unmodified _YAGVASHF_ 0 0 0 REV__nc|ENSG00000171680|O94827-4|PLEKHG5 REV__nc|ENSG00000171680|O94827-4|PLEKHG5 MSMS AL20221201_MKP_PDAC_01 4 426.2066955566406 2 426.205953 850.397353 NaN NaN NaN NaN NaN NaN NaN 33.444 1 29.459 28.959 29.959 -3.9853 0 0 0 0.9249 1 19179 19179 15.768 7.8581 1 + 76685 22588 51208 52311 89347 89347 -0.03383015370911835 YAHALFGG 8 Unmodified _YAHALFGG_ 0 0 0 REV__ENSG00000157227|ENST00000311852|MMP14;REV__ENSG00000125966|ENST00000246186|MMP24;REV__ENSG00000102996|ENST00000219271|MMP15;REV__ENSG00000156103|ENST00000286614|MMP16 REV__ENSG00000125966|ENST00000246186|MMP24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2095336914062 2 418.208495 834.402438 -0.55538 -0.00023227 2.3302 0.0009745 1.7748 0.00074224 418.20909784108915 17.856 0.22339 17.87 17.704 17.927 0.013865 60 42 2 0 0 0 0.80044 1 8905 8905 6.3541 0.59368 1 1237400 + 76686 19532;18273;21311;21373 51209 52312 89348 89348 -0.021387115082802666 YAHCTSGGYS 10 Unmodified _YAHCTSGGYS_ 0 0 0 REV__nc|ENSG00000234414|P0DJD3-3|RBMY1A1 REV__nc|ENSG00000234414|P0DJD3-3|RBMY1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2061767578125 2 523.205824 1044.39709 1.1066 0.000579 1.0688 0.00055921 2.1755 0.0011382 523.20628388002 54.341 0.56808 54.341 54.173 54.741 0 57 24 4 0 0 0 0.69064 1 30134 30134 3.9444 0 1 6035800 + 76687 22425 51210 52313 89349 89349 -0.12332803153071836 YAHIYHQHF 9 Unmodified _YAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8612976074219 3 405.861319 1214.56213 0.016056 6.5163E-06 -0.75293 -0.00030559 -0.73688 -0.00029907 405.8611758207566 26.704 0.1461 26.732 26.635 26.781 0.028664 8 5 2 0 0 0 0.0094915 1 13862 13862 71.922 58.307 1 4128100 76688 3075 51211 52314 89350 89350 -0.03657203231114181 YAHIYHQHF 9 Unmodified _YAHIYHQHF_ 0 0 0 ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B ENST00000497054.5_1_2:74386211-74405801:-|nuORF ENST00000497054.5_1_2:74386211-74405801:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.196044921875 3 405.861319 1214.56213 0.80493 0.00032669 -0.32726 -0.00013282 0.47767 0.00019387 405.8610585093988 30.121 0.24922 26.624 26.508 26.757 -3.497 19 11 2 0 0 0 8.5836E-05 1 16990 16990 118.89 98.908 1 12971000 76689 3075 51211 52314 89351 89351 -0.03657203231114181 YAHPLIEHGF 10 Unmodified _YAHPLIEHGF_ 0 0 0 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 REV__chr15:53523322-53540662|43|17.86|0.17|6.73|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|26 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.2029418945312 3 395.201341 1182.58219 NaN NaN NaN NaN NaN NaN NaN 66.329 1 65.846 65.346 66.346 -0.48323 0 0 0 0.96981 1 36217 36217 1.9064 0.45126 1 + 76690 16783 51212 52315 89352 89352 -0.0017945229114957328 YAHQYYMQY 9 Unmodified _YAHQYYMQY_ 0 0 0 ENSG00000122557|ENST00000311350|HERPUD2 ENSG00000122557|ENST00000311350|HERPUD2 ENSG00000122557|ENST00000311350|HERPUD2 MSMS AL20221201_MKP_PDAC_01 4 633.7666625976562 2 633.766049 1265.51754 NaN NaN NaN NaN NaN NaN NaN 43.819 1 39.054 38.554 39.554 -4.7648 0 0 0 0.3031 1 26664 26664 34.102 14.845 1 76691 3647 51213 52316 89353 89353 -0.10459395159455198 YAHRFPPQTW 10 Unmodified _YAHRFPPQTW_ 0 0 0 ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF;ENSG00000127125|ENST00000372561|PPCS ENST00000471420.1_1_1:42922476-42938912:+|nuORF ENST00000471420.1_1_1:42922476-42938912:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8822326660156 3 434.884123 1301.63054 NaN NaN NaN NaN NaN NaN NaN 26.693 1 26.693 26.193 27.193 0 0 0 0 0.99897 1 13732 13732 0.77653 0.54069 1 76692 3990 51214 52317 89354 89354 -0.008209586512521128 YAHVKMLDMSY 11 Unmodified _YAHVKMLDMSY_ 0 0 0 REV__nc|ENSG00000185585|Q68BL7-2|OLFML2A REV__nc|ENSG00000185585|Q68BL7-2|OLFML2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.2151489257812 3 453.214153 1356.62063 -0.083671 -3.7921E-05 1.1541 0.00052307 1.0705 0.00048515 453.21467775318416 20.292 0.20307 20.292 20.175 20.378 0 32 13 3 0 0 0 0.72981 1 10175 10175 1.4551 0.24029 1 2582200 + 76693 23511 51215 52318 89355 89355 -0.043416507631491186 YAHVQSSPTL 10 Unmodified _YAHVQSSPTL_ 0 0 0 REV__ENST00000484846.1_1_11:64621807-64623066:-|nuORF REV__ENST00000484846.1_1_11:64621807-64623066:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.7811279296875 2 551.780013 1101.54547 NaN NaN NaN NaN NaN NaN NaN 48.516 1 43.12 42.62 43.62 -5.3961 0 0 0 0.68942 1 30230 30230 17.113 0.1706 1 + 76694 27765 51216 52319 89356 89356 -0.0012374890768569458 YAIDNPLHY 9 Unmodified _YAIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.2701416015625 2 553.269281 1104.52401 0.66075 0.00036557 1.5834 0.00087603 2.2441 0.0012416 553.270081411931 52.945 0.26032 52.945 52.82 53.08 0 31 12 3 0 0 0 0.12424 2 29277 29277;29387 30.637 12.49 1 8830400 76695 3829;16172 51217 52320 89357;89358 89357 -0.02407133936435457 YAIDNPLHY 9 Unmodified _YAIDNPLHY_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2704467773438 2 553.269281 1104.52401 0.63521 0.00035144 0.59412 0.00032871 1.2293 0.00068015 553.2696996453575 53.713 0.51793 53.261 52.943 53.461 -0.45173 67 25 4 0 0 0 0.10247 1 28941 28941 32.786 1.5173 1 17580000 76696 3829;16172 51217 52320 89359 89359 -0.02407133936435457 YAIEVDPVL 9 Unmodified _YAIEVDPVL_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7759704589844 2 509.776408 1017.53826 0.33416 0.00017035 -0.45774 -0.00023335 -0.12358 -6.2999E-05 509.77593058856706 76.305 0.40424 76.305 76.064 76.468 0 56 16 4 0 0 0 0.019979 2 42432 42332;42432 63.563 21.468 1 7283200 76697 3651 51218 52321 89360;89361 89361 0.030195184918625273 YAIEVDPVL 9 Unmodified _YAIEVDPVL_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496697-118497264:-|nuORF nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MSMS AL20221201_MKP_PDAC_01 4 509.7768249511719 2 509.776408 1017.53826 NaN NaN NaN NaN NaN NaN NaN 84.541 1 78.365 77.865 78.865 -6.1757 0 0 0 0.086291 1 55624 55624 46.921 2.5139 1 76698 3651 51218 52321 89362 89362 0.030195184918625273 YAIFKSQDF 9 Unmodified _YAIFKSQDF_ 0 0 0 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 ENSG00000173409|ENST00000310256|ARV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7800903320312 2 559.779482 1117.54441 1.7342 0.00097076 2.0126 0.0011266 3.7468 0.0020974 559.7797283124938 98.287 0.14886 92.112 92.057 92.206 -6.1757 14 9 2 0 0 0 0.32871 1 65188 65188 15.847 0 1 15521000 76699 8321 51219 52322 89363 89363 -0.009659632766215509 YAIHDETSY 9 Unmodified _YAIHDETSY_ 0 0 0 ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.V2716Wfs*17|1|0.31|ENSG00000139618|chr13:32363343-32363343|A/-|frameshift_variant;BRCA2|p.N1784Kfs*3|1|0.2|ENSG00000139618|chr13:32339699-32339700|-/A|frameshift_variant ENSG00000139618|ENST00000380152|BRCA2 ENSG00000139618|ENST00000380152|BRCA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7406616210938 2 549.740554 1097.46655 -0.24914 -0.00013696 0.58332 0.00032067 0.33417 0.00018371 549.740807623428 28.842 0.16134 28.842 28.761 28.923 0 12 7 2 0 0 0 0.038285 1 14925 14925 50.855 27.707 1 1915700 76700 5169 51220 52323 89364 89364 -0.0782802093265218 YAIIKEEL 8 Unmodified _YAIIKEEL_ 0 0 0 ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENSG00000156802|ENST00000287394|ATAD2 ENST00000517666.5_1_8:124333376-124408650:-|nuORF ENST00000517666.5_1_8:124333376-124408650:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2810363769531 2 489.778951 977.543348 -0.17699 -8.6687E-05 -0.0026851 -1.3151E-06 -0.17968 -8.8002E-05 489.77880103540014 51.994 0.26062 51.994 51.842 52.103 0 25 11 3 0 0 0 0.27285 1 28747 28747 58.679 14.272 1 5980200 76701 6480 51221 52324 89365 89365 0.05367822354457985 YAILKTETL 9 Unmodified _YAILKTETL_ 0 0 0 ENST00000557682.6_1_15:93428809-93429444:+|nuORF ENST00000557682.6_1_15:93428809-93429444:+|nuORF ENST00000557682.6_1_15:93428809-93429444:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.3069458007812 2 526.305332 1050.59611 2.2036 0.0011597 1.0746 0.00056555 3.2781 0.0017253 526.3059311165883 62.657 0.5482 56.481 56.21 56.759 -6.1757 68 27 3 0 0 0 0.040683 1 40393 40393 64.236 1.6636 1 84373000 76702 15263 51222 52325 89366 89366 0.07283780417287744 YAILTHGI 8 Unmodified _YAILTHGI_ 0 0 0 ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000229937|ENST00000506618|PRPS1L1;ENSG00000147224|ENST00000372435|PRPS1 ENSG00000101911|ENST00000380668|PRPS2 ENSG00000101911|ENST00000380668|PRPS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 887.4999389648438 1 887.498529 886.491253 0.13026 0.00011561 1.7686 0.0015696 1.8988 0.0016852 887.501931681772 65.011 0.059898 58.835 58.787 58.847 -6.1757 4 2 2 0 0 0 0.055232 1 42170 42170 136.08 54.217 1 5884600 76703 1999 51223 52326 89367 89367 0.0434670373138033 YAKCKAFEY 9 Unmodified _YAKCKAFEY_ 0 0 0 REV__ENSG00000113593|ENST00000261308|PPWD1 REV__ENSG00000113593|ENST00000261308|PPWD1 MSMS AL20221201_MKP_PDAC_01 4 561.7665405273438 2 561.76806 1121.52157 NaN NaN NaN NaN NaN NaN NaN 39.333 1 34.882 34.382 35.382 -4.4509 0 0 0 0.6032 1 23333 23333 12.532 1.4171 1 + 76704 18877 51224 52327 89368 89368 -0.03433305665748776 YAKDDPLEF 9 Unmodified _YAKDDPLEF_ 0 0 0 nc|ENSG00000138448|P06756-3|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ENSG00000138448|ENST00000261023|ITGAV nc|ENSG00000138448|P06756-3|ITGAV nc|ENSG00000138448|P06756-3|ITGAV MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.261962890625 2 549.261122 1096.50769 0.33029 0.00018141 0.93965 0.00051611 1.2699 0.00069753 549.2620626598568 51.719 0.18027 51.719 51.622 51.802 0 12 7 2 0 0 0 0.18255 1 28619 28619 26.268 13.226 1 4430100 76705 5057 51225 52328 89369 89369 -0.03670259893192451 YAKELLAW 8 Unmodified _YAKELLAW_ 0 0 0 ENSG00000089639|ENST00000203556|GMIP;nc|ENSG00000089639|Q9P107-2|GMIP;ENST00000591047.1_1_19:19749271-19754364:-|nuORF ENSG00000089639|ENST00000203556|GMIP ENSG00000089639|ENST00000203556|GMIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2725524902344 2 497.273835 992.533118 NaN NaN NaN NaN NaN NaN NaN 81.291 1 81.291 80.791 81.791 0 0 0 0 0.97444 1 45121 45121 0.79363 0 1 76706 1532 51226 52329 89370 89370 0.03655259419883805 YAKIKEEKI 9 Unmodified _YAKIKEEKI_ 0 0 0 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 ENSG00000176571|ENST00000518476|CNBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.5572814941406 3 374.557013 1120.64921 -0.35519 -0.00013304 1.2514 0.0004687 0.89616 0.00033566 374.557426166385 22.489 0.20564 22.489 22.364 22.57 0 23 9 3 0 0 0 0.19361 1 11423 11423 23.79 3.2088 1 2122600 76707 8605 51227 52330 89371 89371 0.09371158199951424 YAKNLESSF 9 Unmodified _YAKNLESSF_ 0 0 0 ENST00000322157.8_1_17:45699289-45699409:+|nuORF ENST00000322157.8_1_17:45699289-45699409:+|nuORF ENST00000322157.8_1_17:45699289-45699409:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7606201171875 2 529.761289 1057.50803 0.36545 0.0001936 1.4152 0.00074969 1.7806 0.00094329 529.76176329436 63.991 0.413 63.991 63.801 64.214 0 21 12 2 0 0 0 0.30562 1 35657 35657 16.942 0 1 2051000 76708 11781 51228 52331 89372 89372 -0.018428401733444844 YAKPLAAL 8 Unmodified _YAKPLAAL_ 0 0 0 ENSG00000101868|ENST00000379068|POLA1;nc|ENSG00000101868|P09884|POLA1;ENST00000480125.1_1_X:24766454-24793337:+|nuORF ENSG00000101868|ENST00000379068|POLA1 ENSG00000101868|ENST00000379068|POLA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.7569274902344 2 423.757821 845.501089 NaN NaN NaN NaN NaN NaN NaN 65.196 1 64.711 64.211 65.211 -0.48428 0 0 0 0.97444 1 35576 35576 2.8892 0 1 76709 1995 51229 52332 89373 89373 0.07215891736746016 YAKPSSNEYI 10 Unmodified _YAKPSSNEYI_ 0 0 0 REV__FAT2|p.T50A|1|0.19|ENSG00000086570|chr5:151568784-151568784|T/C|missense_variant REV__FAT2|p.T50A|1|0.19|ENSG00000086570|chr5:151568784-151568784|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2868041992188 2 586.285128 1170.5557 NaN NaN NaN NaN NaN NaN NaN 50.725 1 50.725 50.225 51.225 0 0 0 0 0.90096 1 27976 27976 7.9102 0.62092 1 + 76710 29345 51230 52333 89374 89374 -0.022751859731215518 YAKQYEEFY 9 Unmodified _YAKQYEEFY_ 0 0 0 ENSG00000112118|ENST00000596288|MCM3;nc|ENSG00000112118|P25205-2|MCM3 ENSG00000112118|ENST00000596288|MCM3 ENSG00000112118|ENST00000596288|MCM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.7796020507812 2 620.779679 1239.5448 NaN NaN NaN NaN NaN NaN NaN 40.536 1 40.536 40.036 41.036 0 0 0 0 0.18753 1 21792 21792 32.305 17.9 1 76711 2860 51231 52334 89375 89375 -0.06538588347416407 YALAESCVTL 10 Unmodified _YALAESCVTL_ 0 0 0 REV__ENSG00000124198|ENST00000371917|ARFGEF2 REV__ENSG00000124198|ENST00000371917|ARFGEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.267333984375 2 535.26535 1068.51615 -0.098074 -5.2495E-05 2.1026 0.0011254 2.0045 0.0010729 535.2669863673565 39.603 0.40238 39.306 39.029 39.431 -0.29716 30 18 2 0 0 0 0.092434 1 20893 20893 48.346 2.3249 1 3517700 + 76712 19426 51232 52335 89376 89376 -0.015370292482202785 YALARQRF 8 Unmodified _YALARQRF_ 0 0 0 REV__ENSG00000184575|ENST00000332707|XPOT REV__ENSG00000184575|ENST00000332707|XPOT MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2611083984375 2 512.787976 1023.5614 0.62822 0.00032215 -2.0535 -0.001053 -1.4253 -0.00073089 512.7860573892882 81.524 0.15844 81.031 80.932 81.09 -0.49289 8 6 2 0 0 0 8.7369 1 44650 44650 2.8892 0.31174 1 152290 + 76713 23427 51233 52336 89377 89377 0.05056002119840741 YALDLYVP 8 Unmodified _YALDLYVP_ 0 0 0 REV__ENSG00000130479|ENST00000324096|MAP1S REV__ENSG00000130479|ENST00000324096|MAP1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2529602050781 2 477.252569 952.490584 0.47972 0.00022895 -0.19361 -9.24E-05 0.28611 0.00013655 477.2524526907032 96.971 0.27025 96.666 96.597 96.867 -0.30472 19 12 2 0 0 0 0.80624 1 52953 52953 2.8892 0 1 535840 + 76714 19721 51234 52337 89378 89378 0.012438642916549725 YALDVPNTAF 10 Unmodified _YALDVPNTAF_ 0 0 0 ENSG00000150527|ENST00000640607|MIA2;nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;nc|ENSG00000150527|Q96PC5-5|MIA2;nc|ENSG00000150527|Q96PC5-8|MIA2;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENST00000416709.1_1_6:168687664-168688738:-|nuORF ENSG00000150527|ENST00000640607|MIA2;ENST00000416709.1_1_6:168687664-168688738:-|nuORF ENSG00000150527|ENST00000640607|MIA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7777709960938 2 555.776939 1109.53933 0.73547 0.00040876 0.71133 0.00039534 1.4468 0.0008041 555.7771328424266 71.658 0.27147 71.181 71.022 71.293 -0.47609 19 10 2 0 0 0 0.50944 1 39211 39211 15.847 7.2539 1 905750 76715 6059;13054 51235 52338 89379 89379 -0.01106267139243755 YALEEGIVRY 10 Unmodified _YALEEGIVRY_ 0 0 0 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.8171997070312 2 606.816596 1211.61864 0.37211 0.0002258 -0.28762 -0.00017453 0.084486 5.1268E-05 606.8163773077348 53.956 0.32106 53.956 53.77 54.091 0 42 14 4 0 0 0 0.0046054 2 29887 29887;29989 99.755 61.58 1 22401000 76716 2609 51236 52339 89380;89381 89380 0.021293798149145005 YALEEGIVRY 10 Unmodified _YALEEGIVRY_ 0 0 0 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.8174438476562 2 606.816596 1211.61864 0.016989 1.0309E-05 0.26327 0.00015976 0.28026 0.00017007 606.816569518037 54.541 0.26089 54.074 53.921 54.182 -0.46664 23 13 2 0 0 0 0.038363 1 29522 29522 63.961 34.12 1 9226900 76717 2609 51236 52339 89382 89382 0.021293798149145005 YALEEGIVRY 10 Unmodified _YALEEGIVRY_ 0 0 0 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 MSMS AL20221201_MKP_PDAC_01 4 606.8165283203125 2 606.816596 1211.61864 NaN NaN NaN NaN NaN NaN NaN 60.553 1 54.405 53.905 54.905 -6.1478 0 0 0 0.057161 1 38965 38965 55.503 35.088 1 76718 2609 51236 52339 89383 89383 0.021293798149145005 YALEEGIVRY 10 Unmodified _YALEEGIVRY_ 0 0 0 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 ENSG00000108826|ENST00000225969|MRPL27 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 606.816596 1211.61864 0.014437 8.7609E-06 0.82662 0.0005016 0.84105 0.00051037 606.8172298054988 54.229 0.16068 54.162 54.021 54.182 -0.066936 0.098161 0.00097551 NaN 99.755 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 645900 76719 2609 51236 52339 0.021293798149145005 YALELLTVY 9 Unmodified _YALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000111335|P29728|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.7999267578125 2 542.799883 1083.58521 0.1865 0.00010123 0.652 0.0003539 0.83849 0.00045513 542.8001926902081 94.601 0.35412 94.181 93.973 94.327 -0.42044 52 19 4 0 0 0 0.40476 2 51719 51616;51719 18.135 6.4947 1 2155300 76720 16067;16068;2782 51237 52340 89384;89385 89385 0.04676378042995566 YALELLTVY 9 Unmodified _YALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000111335|P29728|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.8014526367188 2 542.799883 1083.58521 1.9442 0.0010553 0.57565 0.00031246 2.5198 0.0013678 542.8002425490907 94.133 0.42071 94.148 93.932 94.352 0.014244 44 15 4 0 0 0 0.20428 2 52276 52276;52378 32.117 12.142 1 5901200 76721 16067;16068;2782 51237 52340 89386;89387 89386 0.04676378042995566 YALELLTVY 9 Unmodified _YALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000111335|P29728|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.8006591796875 2 542.799883 1083.58521 1.2288 0.00066701 -0.23685 -0.00012856 0.99199 0.00053845 542.7997367819017 100.12 0.19176 93.946 93.838 94.03 -6.1757 36 11 4 0 0 0 0.094149 1 66855 66855 46.921 16.696 1 138220000 76722 16067;16068;2782 51237 52340 89388 89388 0.04676378042995566 YALELLTVY 9 Unmodified _YALELLTVY_ 0 0 0 nc|ENSG00000111335|P29728|OAS2;ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000111335|P29728|OAS2;nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 542.799883 1083.58521 0.22164 0.00012031 0.88394 0.0004798 1.1056 0.00060011 542.8003405690174 94.079 0.15949 94.079 94.002 94.162 0 -0.0094553 0.0005075 NaN 46.921 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 262830 76723 16067;16068;2782 51237 52340 0.04676378042995566 YALFTSVNMSL 11 Unmodified _YALFTSVNMSL_ 0 0 0 REV__ENSG00000198739|ENST00000361320|LRRTM3 REV__ENSG00000198739|ENST00000361320|LRRTM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.3116455078125 2 623.312832 1244.61111 0.51717 0.00032236 -1.1453 -0.00071391 -0.62818 -0.00039155 623.3120641170525 61.106 0.29581 61.063 60.866 61.162 -0.04351 48 14 5 0 0 0 0.61059 1 33384 33384 10.8 1.4164 1 44801000 + 76724 24049 51238 52341 89389 89389 -0.0014109577703038667 YALGERQSY 9 Unmodified _YALGERQSY_ 0 0 0 nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000553041.5_1_12:96414526-96429297:-|nuORF nc|ENSG00000111144|P09960-3|LTA4H nc|ENSG00000111144|P09960-3|LTA4H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7639770507812 2 543.764363 1085.51417 -0.32602 -0.00017728 -0.47031 -0.00025574 -0.79632 -0.00043301 543.7641946579798 29.644 0.16763 29.644 29.555 29.722 0 23 11 3 0 0 0 0.013609 1 15345 15345 70.332 30.375 1 4859600 76725 2763 51239 52342 89390 89390 -0.025163219418118388 YALGERQSY 9 Unmodified _YALGERQSY_ 0 0 0 nc|ENSG00000111144|P09960-3|LTA4H;nc|ENSG00000111144|P09960-2|LTA4H;nc|ENSG00000111144|P09960-4|LTA4H;ENSG00000111144|ENST00000228740|LTA4H;ENST00000553041.5_1_12:96414526-96429297:-|nuORF nc|ENSG00000111144|P09960-3|LTA4H nc|ENSG00000111144|P09960-3|LTA4H MSMS AL20221201_MKP_PDAC_01 4 543.7628784179688 2 543.764363 1085.51417 NaN NaN NaN NaN NaN NaN NaN 33.416 1 29.43 28.93 29.93 -3.9853 0 0 0 0.011986 1 19163 19163 89.401 43.701 1 76726 2763 51239 52342 89391 89391 -0.025163219418118388 YALGKDFVT 9 Unmodified _YALGKDFVT_ 0 0 0 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 ENSG00000167208|ENST00000330943|SNX20 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3158874511719 2 507.26875 1012.52295 0.2197 0.00011145 -1.8953 -0.00096143 -1.6756 -0.00084998 507.26839142865776 64.628 0.25952 64.143 63.993 64.253 -0.48512 16 11 2 0 0 0 0.20528 1 35264 35264 8.5933 0 1 694280 76727 7587 51240 52343 89392 89392 0.01718651694648088 YALHMSCHGDS 11 Unmodified _YALHMSCHGDS_ 0 0 0 nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;TRPS1|p.N1276Kfs*5|1|0.12|ENSG00000104447|chr8:115414041-115414042|-/T|frameshift_variant;ENSG00000104447|ENST00000395715|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 nc|ENSG00000104447|Q9UHF7|TRPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.4996643066406 3 407.498952 1219.47503 NaN NaN NaN NaN NaN NaN NaN 69.379 1 69.41 68.91 69.91 0.030914 0 0 0 0.92234 1 38133 38133 2.8433 0.93691 1 76728 2209 51241 52344 89393 89393 -0.12593113559341873 YALHQVTVY 9 Unmodified _YALHQVTVY_ 0 0 0 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 ENSG00000169359|ENST00000643144|SLC33A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2872924804688 2 547.287474 1092.5604 0.67832 0.00037124 0.59193 0.00032395 1.2703 0.00069519 547.2881897134947 49.896 0.24839 44.356 44.218 44.466 -5.5391 28 15 2 0 0 0 0.013323 1 31193 31193 71.134 23.385 1 14187000 76729 7868 51242 52345 89394 89394 0.01781742960270094 YALIGEISL 9 Unmodified _YALIGEISL_ 0 0 0 ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;nc|ENSG00000158486|Q8TD57-3|DNAH3;ENST00000572640.5_1_16:21008599-21073979:-|nuORF ENSG00000158486|ENST00000698260|DNAH3 ENSG00000158486|ENST00000698260|DNAH3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 489.7380981445312 2 489.778951 977.543348 0.87209 0.00042713 0.97552 0.00047779 1.8476 0.00090492 489.77842696694205 58.311 0.32076 52.236 52.05 52.371 -6.0745 24 16 2 0 0 0 0.11012 1 37408 37408 36.044 0 1 10035000 76730 6592 51243 52346 89395 89395 0.053678223544807224 YALKKVDE 8 Unmodified _YALKKVDE_ 0 0 0 ENSG00000141446|ENST00000269214|ESCO1 ENSG00000141446|ENST00000269214|ESCO1 ENSG00000141446|ENST00000269214|ESCO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2701110839844 2 483.26875 964.522947 0.47059 0.00022742 1.5272 0.00073804 1.9978 0.00096546 483.2696532273187 48.394 0.1753 48.35 48.239 48.415 -0.04369 19 8 3 0 0 0 0.58902 1 26088 26088 26.884 5.137 1 4260000 76731 5331 51244 52347 89396 89396 0.03926651694666816 YALMHSVM 8 Unmodified _YALMHSVM_ 0 0 0 ENSG00000112462|ENST00000396806|OR12D3 ENSG00000112462|ENST00000396806|OR12D3 ENSG00000112462|ENST00000396806|OR12D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 476.2258911132812 2 476.224974 950.435394 0.11742 5.592E-05 1.2138 0.00057802 1.3312 0.00063394 476.22572898690953 28.553 0.10145 28.583 28.52 28.621 0.029564 6 3 2 0 0 0 0.80143 1 14880 14880 5.7604 0 1 1155300 76732 2894 51245 52348 89397 89397 -0.04180588772101146 YALPAVANM 9 Oxidation (M) _YALPAVANM(Oxidation (M))_ YALPAVANM(1) YALPAVANM(57) 0 0 1 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.2402954101562 2 483.241678 964.468803 0.26187 0.00012655 -0.80684 -0.0003899 -0.54497 -0.00026335 483.2413459090145 49.038 0.36422 49.038 48.932 49.296 0 36 17 3 0 0 0 0.027803 1 26949 26949 56.541 20.497 1 2863400 76733 357 51246 52349 89398 89398 44 -0.01485263728557129 YALPAVANM 9 Oxidation (M) _YALPAVANM(Oxidation (M))_ 0 0 1 nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2 nc|ENSG00000007171|P35228-2|NOS2 nc|ENSG00000007171|P35228-2|NOS2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 483.241678 964.468803 0.81807 0.00039533 -0.34269 -0.0001656 0.47538 0.00022972 483.2416249962665 49.515 0.34993 49.123 48.964 49.313 -0.3923 0.042598 0.000139 NaN 56.541 24 17 2 NaN NaN NaN NaN 0 NaN NaN 0 2406600 76734 357 51246 52349 44 -0.01485263728557129 YALPEGTSSH 10 Unmodified _YALPEGTSSH_ 0 0 0 REV__nc|ENSG00000117477|Q5TID7-2|CCDC181 REV__nc|ENSG00000117477|Q5TID7-2|CCDC181 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2494506835938 2 531.248546 1060.48254 0.29863 0.00015865 1.2602 0.00066946 1.5588 0.00082811 531.2491403269787 64.56 0.3791 64.56 64.365 64.745 0 35 18 2 0 0 0 0.42068 2 35933 35933;36034 20.454 2.3073 1 26693000 + 76735 19108 51247 52350 89399;89400 89399 -0.04528314695744484 YALPYLPTF 9 Unmodified _YALPYLPTF_ 0 0 0 ENST00000507916.6_1_4:90640987-90641107:+|nuORF ENST00000507916.6_1_4:90640987-90641107:+|nuORF ENST00000507916.6_1_4:90640987-90641107:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7941284179688 2 542.789318 1083.56408 1.7021 0.00092386 -0.96745 -0.00052512 0.7346 0.00039873 543.2898372365693 81.63 0.55338 81.69 81.452 82.006 0.059929 77 21 5 0 0 0 0.18465 1 45085 45085 24.674 0 1 24068000 76736 14547 51248 52351 89401 89401 0.0256441273411383 YALQVHCY 8 Carbamidomethyl (C) _YALQVHC(Carbamidomethyl (C))Y_ YALQVHC(1)Y YALQVHC(43)Y 0 1 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2445678710938 2 527.244752 1052.47495 0.46501 0.00024517 -1.388 -0.00073183 -0.92303 -0.00048666 527.2442933241944 39.601 0.33945 39.601 39.381 39.72 0 37 15 4 0 0 0 0.41521 1 21252 21252 42.968 20.232 1 18151000 76737 2711 51249 52352 89402 89402 278 -0.04918745497047894 YALQVHCY 8 Carbamidomethyl (C) _YALQVHC(Carbamidomethyl (C))Y_ YALQVHC(1)Y YALQVHC(43)Y 0 1 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2446899414062 2 527.244752 1052.47495 0.092024 4.8519E-05 -0.12483 -6.5816E-05 -0.032806 -1.7297E-05 527.2449070567809 39.976 0.23402 39.678 39.548 39.782 -0.29716 31 10 4 0 0 0 0.41521 1 21080 21080 42.968 23.711 1 11989000 76738 2711 51249 52352 89403 89403 278 -0.04918745497047894 YALQVHCY 8 Carbamidomethyl (C) _YALQVHC(Carbamidomethyl (C))Y_ YALQVHC(1)Y YALQVHC(53)Y 0 1 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2445678710938 2 527.244752 1052.47495 0.63235 0.0003334 -0.92418 -0.00048727 -0.29183 -0.00015386 527.2441249246925 44.644 0.51186 39.792 39.541 40.053 -4.852 111 39 3 0 0 0 0.32412 2 27301 27164;27301 52.693 31.822 1 126710000 76739 2711 51249 52352 89404;89405 89405 278 -0.04918745497047894 YALQVHCY 8 Carbamidomethyl (C) _YALQVHC(Carbamidomethyl (C))Y_ 0 1 0 nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000534470.1_1_11:10820460-10820850:-|nuORF;ENST00000525606.5_1_11:10819365-10820979:-|nuORF nc|ENSG00000110321|P78344-2|EIF4G2 nc|ENSG00000110321|P78344-2|EIF4G2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 527.244752 1052.47495 0.28374 0.0001496 1.3271 0.00069972 1.6109 0.00084932 527.2458526180319 39.591 0.14532 39.603 39.55 39.695 0.011452 -0.065784 0.0020838 NaN 52.693 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 672310 76740 2711 51249 52352 278 -0.04918745497047894 YALRAEAY 8 Unmodified _YALRAEAY_ 0 0 0 ENSG00000167094|ENST00000373289|TTC16 ENSG00000167094|ENST00000373289|TTC16 ENSG00000167094|ENST00000373289|TTC16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7461853027344 2 478.745442 955.476331 -0.14968 -7.1661E-05 0.75102 0.00035955 0.60134 0.00028789 478.7457277933882 22.635 0.26778 22.635 22.486 22.754 0 39 12 4 0 0 0 0.80044 1 11580 11580 6.3541 0 1 7089300 76741 7570 51250 52353 89406 89406 -0.003187881366329748 YALTRLLVF 9 Unmodified _YALTRLLVF_ 0 0 0 REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1 REV__nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.815185546875 3 365.890215 1094.64882 0.20651 7.5561E-05 0.49154 0.00017985 0.69805 0.00025541 366.2249386212902 65.381 0.69832 64.897 64.616 65.314 -0.48428 38 31 2 0 0 0 0.21302 1 35549 35549 5.7319 0 1 1889000 + 76742 20250 51251 52354 89407 89407 0.10527783270754298 YALVEQFTRS 10 Unmodified _YALVEQFTRS_ 0 0 0 REV__ENSG00000188352|ENST00000338382|FOCAD REV__ENSG00000188352|ENST00000338382|FOCAD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2105712890625 3 405.211906 1212.61389 NaN NaN NaN NaN NaN NaN NaN 20.399 1 20.409 19.909 20.909 0.010553 0 0 0 0.94046 1 10403 10403 6.1918 4.4496 1 + 76743 23708 51252 52355 89408 89408 0.01608495672121535 YAMEIKVEKD 10 Unmodified _YAMEIKVEKD_ 0 0 0 ENSG00000099260|ENST00000263174|PALMD;nc|ENSG00000099260|Q9NP74-2|PALMD ENSG00000099260|ENST00000263174|PALMD ENSG00000099260|ENST00000263174|PALMD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5353088378906 3 409.209285 1224.60602 NaN NaN NaN NaN NaN NaN NaN 17.594 1 17.594 17.094 18.094 0 0 0 0 0.99248 1 8681 8681 0.62683 0.16849 1 76744 1690 51253 52356 89409 89409 0.002706003603634599 YAMHLSACAY 10 Unmodified _YAMHLSACAY_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.7597045898438 2 565.243895 1128.47324 0.79222 0.0004478 -4.067 -0.0022989 -3.2748 -0.0018511 565.7431860536435 47.619 0.16287 47.266 47.165 47.328 -0.3526 12 7 2 0 0 0 0.23489 1 25500 25500 7.9102 0 1 1479900 76745 8348 51254 52357 89410 89410 -0.08586122577298738 YAMHLSACAY 10 Unmodified _YAMHLSACAY_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 565.243895 1128.47324 0.50048 0.0002829 -2.4567 -0.0013886 -1.9562 -0.0011057 565.2429618641517 47.305 0.27855 47.305 47.149 47.427 0 0.01955 0.0011563 NaN 7.9102 17 12 2 NaN NaN NaN NaN 0 NaN NaN 0 1073800 76746 8348 51254 52357 -0.08586122577298738 YAMKAEVL 8 Oxidation (M) _YAM(Oxidation (M))KAEVL_ YAM(1)KAEVL YAM(48)KAEVL 0 0 1 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 470.7440490722656 2 470.744053 939.473554 -0.061434 -2.8919E-05 0.11782 5.5464E-05 0.056389 2.6545E-05 470.74430164826185 29.437 0.14205 29.437 29.328 29.47 0 18 6 4 0 0 0 0.36898 1 15251 15251 47.749 13.561 1 2780300 76747 9162 51255 52358 89411 89411 1526 0.0013962041421109461 YAMKAEVL 8 Unmodified _YAMKAEVL_ 0 0 0 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 ENSG00000183576|ENST00000331768|SETD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 462.7475280761719 2 462.746596 923.478639 0.90569 0.0004191 -0.56004 -0.00025916 0.34565 0.00015995 462.746108532771 47.218 0.28635 42.138 41.99 42.276 -5.0805 27 20 2 0 0 0 0.54555 1 29316 29316 30.637 2.1497 1 12127000 76748 9162 51255 52359 89412 89412 0.013839242768312943 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5113830566406 3 379.511298 1135.51206 -0.25151 -9.5452E-05 0.4014 0.00015234 0.14989 5.6885E-05 379.5113703985074 21.374 0.16079 21.402 21.341 21.502 0.028357 12 7 2 0 0 0 0.52844 1 10846 10846 5.7319 0.43497 1 1160200 + 76749 25162 51256 52360 89413 89413 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5114440917969 3 379.511298 1135.51206 0.59951 0.00022752 -0.38313 -0.0001454 0.21638 8.212E-05 379.51111941022396 28.836 0.23209 28.774 28.644 28.876 -0.062159 28 9 4 0 0 0 0.57757 1 14926 14926 2.7352 0.82882 1 15359000 + 76750 25162 51256 52360 89414 89414 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5118103027344 3 379.511298 1135.51206 0.53408 0.00020269 0.43606 0.00016549 0.97014 0.00036818 379.51154177239425 30.537 0.48442 30.435 30.233 30.717 -0.10269 46 18 5 0 0 0 0.57757 1 15924 15924 2.7352 0 1 17018000 + 76751 25162 51256 52360 89415 89415 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7640991210938 2 568.763309 1135.51206 0.17029 9.6856E-05 0.70232 0.00039946 0.87261 0.00049631 568.7636499084512 32.023 0.28658 31.894 31.699 31.986 -0.12915 25 11 3 0 0 0 0.34134 1 16624 16624 10.824 0 1 5765000 + 76752 25162 51256 52360 89416 89416 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.5116271972656 3 379.511298 1135.51206 -0.081358 -3.0876E-05 1.1114 0.00042177 1.03 0.0003909 379.51168445880506 30.282 0.2108 30.312 30.182 30.393 0.030106 13 8 2 0 0 0 0.57757 1 15845 15845 2.7352 1.7729 1 1192300 + 76753 25162 51256 52360 89417 89417 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.2212524414062 3 379.511298 1135.51206 0.89909 0.00034121 -0.094287 -3.5783E-05 0.8048 0.00030543 379.51128938770074 27.715 1.1161 24.678 24.435 25.551 -3.0365 122 58 5 0 0 0 0.21404 1 15438 15438 5.2969 0.39987 1 192630000 + 76754 25162 51256 52360 89418 89418 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.511298 1135.51206 0.59951 0.00022752 -0.38313 -0.0001454 0.21638 8.212E-05 379.51111941022396 28.836 0.23209 28.774 28.644 28.876 -0.062159 -0.060643 -0.00046279 NaN 2.7352 28 9 4 NaN NaN NaN NaN 0 NaN NaN 0 15359000 + 76755 25162 51256 52360 -0.05027073951282546 YAMQRSAYF 9 Unmodified _YAMQRSAYF_ 0 0 0 REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF REV__ENST00000274030.10_1_4:120160492-120160642:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 379.511298 1135.51206 -0.081358 -3.0876E-05 1.1114 0.00042177 1.03 0.0003909 379.51168445880506 30.282 0.2108 30.312 30.182 30.393 0.030106 -0.11538 0.00039833 NaN 2.7352 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1192300 + 76756 25162 51256 52360 -0.05027073951282546 YAMSGTETSI 10 Unmodified _YAMSGTETSI_ 0 0 0 ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2366943359375 2 530.23679 1058.45903 0.89407 0.00047407 0.13495 7.1557E-05 1.029 0.00054563 530.2367009769168 54.143 0.55909 54.143 53.839 54.398 0 71 25 4 0 0 0 0.50944 1 30075 30075 15.847 0 1 54083000 76757 7766 51257 52361 89419 89419 -0.06786496524568975 YANEVGEAF 9 Unmodified _YANEVGEAF_ 0 0 0 ENSG00000242114|ENST00000266263|MTFP1;nc|ENSG00000242114|Q9UDX5-2|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 999.4494018554688 1 999.441802 998.434526 0.020375 2.0363E-05 0.29802 0.00029786 0.3184 0.00031822 999.4424219617388 45.749 0.19455 45.749 45.625 45.819 0 17 9 2 0 0 0 0.022193 1 24913 24913 61.357 25.23 1 3543300 76758 10692 51258 52362 89420 89420 -0.06475388615797328 YANEVGEAF 9 Unmodified _YANEVGEAF_ 0 0 0 ENSG00000242114|ENST00000266263|MTFP1;nc|ENSG00000242114|Q9UDX5-2|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 ENSG00000242114|ENST00000266263|MTFP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.224853515625 2 500.224539 998.434526 0.44491 0.00022255 -0.035794 -1.7905E-05 0.40911 0.00020465 500.2246966371961 45.712 0.21435 45.712 45.605 45.819 0 17 10 2 0 0 0 0.2001 1 24950 24950 23.148 1.4018 1 5519200 76759 10692 51258 52362 89421 89421 -0.06475388615797328 YANGGKAA 8 Unmodified _YANGGKAA_ 0 0 0 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1972045898438 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 15.872 1 15.872 15.372 16.372 0 0 0 0 0.97444 1 7687 7687 2.5775 0.51773 1 76760 16425 51259 52363 89422 89422 -0.019115884050052045 YANGGKAA 8 Unmodified _YANGGKAA_ 0 0 0 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 nc|ENSG00000180846|Q8NCQ2|CSNK1G2-AS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.1907653808594 2 376.190303 750.366053 NaN NaN NaN NaN NaN NaN NaN 16.315 1 16.316 15.816 16.816 0.0010548 0 0 0 0.97444 1 8040 8040 2.5775 0.51773 1 76761 16425 51259 52363 89423 89423 -0.019115884050052045 YANSKAVTL 9 Unmodified _YANSKAVTL_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.7661437988281 2 483.766374 965.518196 -0.41496 -0.00020074 0.10992 5.3177E-05 -0.30504 -0.00014757 483.76640336722545 29.935 0.16797 29.935 29.847 30.015 0 13 7 2 0 0 0 0.21643 1 15543 15543 21.537 3.3906 1 1050400 76762 7137 51260 52364 89424 89424 0.03405767551907957 YANSKAVTL 9 Unmodified _YANSKAVTL_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MSMS AL20221201_MKP_PDAC_01 4 484.2513122558594 2 483.766374 965.518196 NaN NaN NaN NaN NaN NaN NaN 33.404 1 29.419 28.919 29.919 -3.9853 0 0 0 0.091025 1 19156 19156 45.7 17.213 1 76763 7137 51260 52364 89425 89425 0.03405767551907957 YANSKAVTL 9 Unmodified _YANSKAVTL_ 0 0 0 ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF ENSG00000164091|ENST00000296490|WDR82 ENSG00000164091|ENST00000296490|WDR82 MSMS AL20221201_MKP_PDAC_01 4 483.7674865722656 2 483.766374 965.518196 NaN NaN NaN NaN NaN NaN NaN 33.47 1 29.485 28.985 29.985 -3.9853 0 0 0 0.026638 1 19196 19196 70.332 30.375 1 76764 7137 51260 52364 89426 89426 0.03405767551907957 YAPDYQSF 8 Unmodified _YAPDYQSF_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7135620117188 2 495.713808 989.413062 0.58063 0.00028783 -0.072505 -3.5942E-05 0.50812 0.00025188 495.7136810291313 71.333 0.20237 70.856 70.747 70.949 -0.47736 13 8 2 0 0 0 0.80044 1 39057 39057 6.3541 0.59368 1 1018200 76765 4537 51261 52365 89427 89427 -0.08206773644519672 YAPEAPAL 8 Unmodified _YAPEAPAL_ 0 0 0 REV__ENSG00000215397|ENST00000246104|SCRT2 REV__ENSG00000215397|ENST00000246104|SCRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 831.42578125 1 831.424696 830.417419 0.18021 0.00014983 0.0010129 8.4211E-07 0.18122 0.00015067 831.4246933680155 58.004 0.33686 58.004 57.817 58.154 0 27 13 3 0 0 0 0.37649 2 32234 32234;32343 46.921 3.9824 1 3354200 + 76766 24340 51262 52366 89428;89429 89428 -0.0045726443096327785 YAPEAPAL 8 Unmodified _YAPEAPAL_ 0 0 0 REV__ENSG00000215397|ENST00000246104|SCRT2 REV__ENSG00000215397|ENST00000246104|SCRT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 831.4259033203125 1 831.424696 830.417419 0.7711 0.00064112 -0.37703 -0.00031347 0.39407 0.00032764 831.4242405435202 65.943 0.32462 59.768 59.628 59.952 -6.1757 23 18 2 0 0 0 0.37649 1 42836 42836 46.921 3.9529 1 10986000 + 76767 24340 51262 52366 89430 89430 -0.0045726443096327785 YAPEAPAL 8 Unmodified _YAPEAPAL_ 0 0 0 REV__ENSG00000215397|ENST00000246104|SCRT2 REV__ENSG00000215397|ENST00000246104|SCRT2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 831.424696 830.417419 0.18021 0.00014983 0.0010129 8.4211E-07 0.18122 0.00015067 831.4246933680155 58.004 0.33686 58.004 57.817 58.154 0 0 0 NaN 46.921 27 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3354200 + 76768 24340 51262 52366 -0.0045726443096327785 YAPGELGP 8 Unmodified _YAPGELGP_ 0 0 0 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 ENSG00000185668|ENST00000373012|POU3F1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 804.4041748046875 1 803.393396 802.386119 -0.025425 -2.0426E-05 0.051461 4.1344E-05 0.026036 2.0918E-05 803.3940951502866 62.907 0.41782 62.907 62.655 63.073 0 36 17 3 0 0 0 0.81107 1 35001 35001 0 0 1 2804600 76769 9398 51263 52367 89431 89431 -0.022978374650278965 YAPHYDSTF 9 Unmodified _YAPHYDSTF_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7;ENST00000466133.1_1_3:159819443-159820214:+|nuORF ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7418212890625 2 550.737814 1099.46108 2.0735 0.0011419 -0.63772 -0.00035121 1.4358 0.00079073 550.737501377331 100.12 0.1349 100.09 100.02 100.15 -0.036301 14 4 4 0 0 0 0.095405 1 55624 55624 34.102 5.6156 1 14745000 76770 7442 51264 52368 89432 89432 -0.08467699724474187 YAPHYDSTF 9 Unmodified _YAPHYDSTF_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7;ENST00000466133.1_1_3:159819443-159820214:+|nuORF ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7377319335938 2 550.737814 1099.46108 1.146 0.00063117 -0.32219 -0.00017744 0.82386 0.00045373 550.7377202707318 101.15 0.10867 94.978 94.923 95.032 -6.1757 11 6 2 0 0 0 0.095405 1 67852 67852 34.102 3.8776 1 29560000 76771 7442 51264 52368 89433 89433 -0.08467699724474187 YAPHYDSTF 9 Unmodified _YAPHYDSTF_ 0 0 0 ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7;ENST00000466133.1_1_3:159819443-159820214:+|nuORF ENSG00000166164|ENST00000394688|BRD7 ENSG00000166164|ENST00000394688|BRD7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 550.737814 1099.46108 2.0735 0.0011419 -0.63772 -0.00035121 1.4358 0.00079073 550.737501377331 100.12 0.1349 100.09 100.02 100.15 -0.036301 0 0 NaN 34.102 14 4 4 NaN NaN NaN NaN 0 NaN NaN 0 14745000 76772 7442 51264 52368 -0.08467699724474187 YAPNQGRYY 9 Unmodified _YAPNQGRYY_ 0 0 0 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2625122070312 2 566.26453 1130.51451 -0.088886 -5.0333E-05 -2.0392 -0.0011547 -2.1281 -0.0012051 566.2630571872016 33.681 0.75959 33.522 33.27 34.03 -0.15918 65 30 3 0 0 0 0.54444 1 17507 17507 4.756 0.81161 1 2981800 76773 5662 51265 52369 89434 89434 -0.04552902221939803 YAPNRRKSRRF 11 Unmodified _YAPNRRKSRRF_ 0 0 0 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 ENSG00000006047|ENST00000007699|YBX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.2773132324219 3 484.276126 1449.80655 0.35416 0.00017151 2.4347 0.0011791 2.7889 0.0013506 484.2772376785386 75.411 0.25884 75.457 75.346 75.605 0.045959 17 11 2 0 0 0 0.67477 1 41599 41599 6.6235 1.1002 1 2236800 76774 324 51266 52370 89435 89435 0.0996367558266229 YAQALIEDLL 10 Unmodified _YAQALIEDLL_ 0 0 0 REV__ENSG00000135476|ENST00000257934|ESPL1 REV__ENSG00000135476|ENST00000257934|ESPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8150634765625 2 574.813522 1147.61249 0.38774 0.00022288 1.0411 0.00059846 1.4289 0.00082134 574.8136784405187 81.577 0.29873 81.577 81.416 81.715 0 32 15 3 0 0 0 0.67033 1 45254 45254 6.2058 1.3088 1 656900 + 76775 20072 51267 52371 89436 89436 0.044588615833845324 YAQATCPTFH 10 Unmodified _YAQATCPTFH_ 0 0 0 REV__ENST00000206423.7_2_3:112323420-112323531:-|nuORF REV__ENST00000206423.7_2_3:112323420-112323531:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7535400390625 2 569.752941 1137.49133 0.0045949 2.618E-06 0.83124 0.0004736 0.83584 0.00047622 569.753563174601 37.376 0.38182 37.105 36.945 37.327 -0.27133 50 15 5 0 0 0 0.64183 1 19703 19703 10.074 1.9184 1 18901000 + 76776 24726 51268 52372 89437 89437 -0.07191664330912317 YAQDEHLITF 10 Unmodified _YAQDEHLITF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.7984619140625 2 618.798403 1235.58225 0.52595 0.00032546 0.71443 0.00044209 1.2404 0.00076755 618.7981788743499 58.056 0.36424 58.056 57.869 58.233 0 42 14 4 0 0 0 0.087164 1 32358 32358 49.527 27.99 1 13001000 76777 5575 51269 52373 89438 89438 -0.02611497081829839 YAQDEHLITF 10 Unmodified _YAQDEHLITF_ 0 0 0 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 ENSG00000144028|ENST00000323853|SNRNP200 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.2764892578125 2 618.798403 1235.58225 0.3345 0.00020699 0.17735 0.00010974 0.51184 0.00031673 618.797855166021 58.495 0.27106 58.004 57.861 58.133 -0.49079 27 12 3 0 0 0 0.23057 1 31790 31790 13.042 4.2971 1 3723100 76778 5575 51269 52373 89439 89439 -0.02611497081829839 YAQKHQQL 8 Unmodified _YAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2691345214844 2 508.269616 1014.52468 -0.29671 -0.00015081 0.20385 0.00010361 -0.09286 -4.7198E-05 508.26971745546456 15.893 0.12554 15.893 15.808 15.934 0 46 28 2 0 0 0 0.5953 1 7672 7672 26.341 9.399 1 637830 76779 9940 51270 52374 89440 89440 0.017997055032765275 YAQKHQQL 8 Unmodified _YAQKHQQL_ 0 0 0 ENSG00000197323|ENST00000358465|TRIM33;nc|ENSG00000197323|Q9UPN9-2|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 ENSG00000197323|ENST00000358465|TRIM33 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2701416015625 2 508.269616 1014.52468 0.081401 4.1373E-05 0.60824 0.00030915 0.68964 0.00035052 508.26992330010836 16.634 0.17552 14.077 13.987 14.163 -2.557 43 24 2 0 0 0 0.15234 1 8603 8603 86.121 41.714 1 5168400 76780 9940 51270 52374 89441 89441 0.017997055032765275 YAQLEDVNW 9 Unmodified _YAQLEDVNW_ 0 0 0 REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B REV__nc|ENSG00000277149|Q6NUM6-2|TYW1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.263916015625 2 569.264196 1136.51384 NaN NaN NaN NaN NaN NaN NaN 39.296 1 39.009 38.509 39.509 -0.28687 0 0 0 0.7243 1 20723 20723 8.5933 0 1 + 76781 24086 51271 52375 89442 89442 -0.048957416616758564 YAQQDTQEF 9 Unmodified _YAQQDTQEF_ 0 0 0 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 ENSG00000136878|ENST00000372429|USP20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1651306152344 3 377.164732 1128.47237 -0.29903 -0.00011278 0.5968 0.00022509 0.29776 0.00011231 377.16515282542446 41.781 0.21253 41.781 41.689 41.901 0 20 10 3 0 0 0 0.53666 1 22587 22587 2.9952 0.26005 1 4608100 76782 4875 51272 52376 89443 89443 -0.08672922420987561 YARDDLSLY 9 Unmodified _YARDDLSLY_ 0 0 0 nc|nan|Q6ZRI6-2|C15orf39;ENSG00000167173|ENST00000394987|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 nc|nan|Q6ZRI6-2|C15orf39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.271728515625 2 558.272021 1114.52949 0.23196 0.0001295 -0.24254 -0.00013541 -0.010585 -5.9091E-06 558.2720118065225 45.409 0.20605 45.409 45.306 45.512 0 16 11 2 0 0 0 0.025842 1 24735 24735 57.722 25.416 1 15059000 76783 7582 51273 52377 89444 89444 -0.023194551446067635 YARDETEFY 9 Unmodified _YARDETEFY_ 0 0 0 ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2583618164062 2 597.259111 1192.50367 -0.52274 -0.00031221 0.50586 0.00030213 -0.016882 -1.0083E-05 597.2593998752662 35.129 0.28791 35.129 34.958 35.246 0 49 14 4 0 0 0 0.0074135 2 18505 18505;18610 110.67 78.369 1 46447000 76784 9098 51274 52378 89445;89446 89445 -0.08488349386902883 YARDETEFY 9 Unmodified _YARDETEFY_ 0 0 0 ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2592163085938 2 597.259111 1192.50367 0.0036143 2.1587E-06 0.37188 0.00022211 0.3755 0.00022427 597.2592529214054 39.698 0.37564 35.247 35.073 35.449 -4.4509 63 23 3 0 0 0 0.008513 2 23676 23540;23676 99.755 65.354 1 49870000 76785 9098 51274 52378 89447;89448 89448 -0.08488349386902883 YARDETEFY 9 Unmodified _YARDETEFY_ 0 0 0 ENST00000329092.12_1_3:197677808-197679492:+|nuORF;ENSG00000182899|ENST00000647248|RPL35A;ENST00000485439.5_1_3:197677808-197681048:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF ENST00000329092.12_1_3:197677808-197679492:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 597.259111 1192.50367 -0.12858 -7.6797E-05 0.049582 2.9613E-05 -0.079 -4.7184E-05 597.7599558766042 35.046 0.083771 35.073 35.018 35.102 0.027401 -0.076739 -0.00045626 NaN 110.67 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 625260 76786 9098 51274 52378 -0.08488349386902883 YAREHDATY 9 Unmodified _YAREHDATY_ 0 0 0 REV__ENSG00000146072|ENST00000296861|TNFRSF21 REV__ENSG00000146072|ENST00000296861|TNFRSF21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2553100585938 2 563.25162 1124.48869 -0.22265 -0.00012541 -2.2324 -0.0012574 -2.455 -0.0013828 563.2507014982241 41.495 0.47081 41.495 41.218 41.689 0 52 23 3 0 0 0 0.37804 1 22288 22288 13.508 0.97634 1 13840000 + 76787 20808 51275 52379 89449 89449 -0.06857796464214516 YARELEELS 9 Unmodified _YARELEELS_ 0 0 0 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 ENSG00000109063|ENST00000583535|MYH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2772827148438 2 555.277303 1108.54005 0.73903 0.00041036 -0.23906 -0.00013274 0.49997 0.00027762 555.277259096093 47.971 0.3243 47.971 47.767 48.092 0 51 15 4 0 0 0 0.32871 1 26335 26335 15.847 2.8047 1 46039000 76788 2625 51276 52380 89450 89450 -0.009874724901692389 YARFCKCC 8 Unmodified _YARFCKCC_ 0 0 0 nc|ENSG00000188162|Q6ZRI0|OTOG;ENSG00000188162|ENST00000399397|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG nc|ENSG00000188162|Q6ZRI0|OTOG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.208984375 2 497.208801 992.403048 -0.47109 -0.00023423 1.1517 0.00057261 0.68056 0.00033838 497.2093944671915 77.195 0.26748 76.712 76.624 76.892 -0.4826 16 11 2 0 0 0 0.80975 1 42266 42266 0.79363 0 1 628740 76789 9633 51277 52381 89451 89451 -0.09345699446760136 YARGHYTI 8 Unmodified _YARGHYTI_ 0 0 0 nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000123416|ENST00000336023|TUBA1B;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580068-49580335:-|nuORF;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;ENSG00000167553|ENST00000301072|TUBA1C nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000127824|ENST00000248437|TUBA4A;ENSG00000167553|ENST00000301072|TUBA1C ENSG00000167553|ENST00000301072|TUBA1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.7505493164062 2 490.751059 979.487565 0.4703 0.0002308 -0.05182 -2.5431E-05 0.41848 0.00020537 490.75111480273364 27.035 0.22919 23.999 23.893 24.122 -3.0365 17 11 2 0 0 0 0.17954 2 14952 14952;15010 78.149 34.291 1 10971000 76790 3708;4027;7630 51278 52382 89452;89453 89452 -0.0029996604248481162 YARGHYTNL 9 Unmodified _YARGHYTNL_ 0 0 0 nc|ENSG00000123416|P68363-2|TUBA1B nc|ENSG00000123416|P68363-2|TUBA1B nc|ENSG00000123416|P68363-2|TUBA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8511657714844 3 365.51744 1093.53049 0.13188 4.8204E-05 -0.89187 -0.00032599 -0.75999 -0.00027779 365.51722841187024 24.498 0.14553 24.522 24.441 24.586 0.024429 8 5 2 0 0 0 0.32871 1 12641 12641 10.8 0 1 6622200 76791 16164 51279 52383 89454 89454 -0.01253195985077582 YARNDTVRF 9 Unmodified _YARNDTVRF_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.1952209472656 3 381.196478 1140.56761 NaN NaN NaN NaN NaN NaN NaN 27.261 1 27.261 26.761 27.761 0 0 0 0 0.65645 1 14040 14040 7.4771 4.7419 1 76792 5664 51280 52384 89455 89455 0.0029447556069044367 YARPPVLAKL 10 Unmodified _YARPPVLAKL_ 0 0 0 nc|ENSG00000256263|A8MPP1|DDX11L8;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-3|DDX11;nc|ENSG00000013573|Q96FC9-4|DDX11;ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000435753.6_1_12:31250908-31256767:+|nuORF nc|ENSG00000256263|A8MPP1|DDX11L8 nc|ENSG00000256263|A8MPP1|DDX11L8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 563.818115234375 2 564.350409 1126.68626 1.1141 0.00062876 0.092222 5.2045E-05 1.2064 0.00068081 564.3508191192951 99.273 0.11953 93.097 93.009 93.128 -6.1757 16 6 3 0 0 0 0.23634 1 66036 66036 6.7232 0 1 24090000 76793 479 51281 52385 89456 89456 0.12798874536360927 YARREGEMVKC 11 Unmodified _YARREGEMVKC_ 0 0 0 REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF REV__ENST00000474199.5_1_19:48800699-48823634:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 447.8851623535156 3 447.884918 1340.63293 NaN NaN NaN NaN NaN NaN NaN 94.602 1 88.427 87.927 88.927 -6.1757 0 0 0 0.92234 1 62660 62660 2.8433 0.21205 1 + 76794 18428 51282 52386 89457 89457 -0.023766143001012097 YARRRSYL 8 Unmodified _YARRRSYL_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.80517578125 2 542.804157 1083.59376 NaN NaN NaN NaN NaN NaN NaN 53.618 1 53.166 52.666 53.666 -0.45173 0 0 0 0.83301 1 29014 29014 28.173 7.302 1 76795 5175 51283 52387 89458 89458 0.05530789522822488 YARSVHEEF 9 Unmodified _YARSVHEEF_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.848876953125 3 379.848967 1136.52507 -0.35156 -0.00013354 0.46502 0.00017664 0.11345 4.3096E-05 379.849163698495 22.744 0.21404 22.744 22.633 22.847 0 30 10 4 0 0 0 0.18144 1 11550 11550 23.801 10.759 1 10258000 76796 1256 51284 52388 89459 89459 -0.03772919567518329 YARSVHEEF 9 Unmodified _YARSVHEEF_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8488159179688 3 379.848967 1136.52507 0.41722 0.00015848 0.33126 0.00012583 0.74848 0.00028431 379.84927647380215 25.318 0.34754 22.435 22.278 22.625 -2.8831 49 22 4 0 0 0 0.34134 1 13795 13795 10.899 5.6021 1 23311000 76797 1256 51284 52388 89460 89460 -0.03772919567518329 YARSVHEEF 9 Unmodified _YARSVHEEF_ 0 0 0 ENST00000465727.5_1_1:1152894-1153089:-|nuORF;nc|ENSG00000078808|Q9BRK5-5|SDF4;ENST00000494748.1_1_1:1152894-1154464:-|nuORF;nc|ENSG00000078808|Q9BRK5-2|SDF4;ENST00000478938.1_1_1:1152894-1154464:-|nuORF;ENSG00000078808|ENST00000360001|SDF4;nc|ENSG00000078808|Q9BRK5|SDF4 ENST00000465727.5_1_1:1152894-1153089:-|nuORF ENST00000465727.5_1_1:1152894-1153089:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 569.2694702148438 2 569.269813 1136.52507 NaN NaN NaN NaN NaN NaN NaN 25.302 1 22.419 21.919 22.919 -2.8831 0 0 0 0.32622 1 13845 13845 23.79 5.6434 1 76798 1256 51284 52388 89461 89461 -0.03772919567518329 YARVNIFF 8 Unmodified _YARVNIFF_ 0 0 0 ENST00000488099.1_1_2:38809156-38812824:-|nuORF ENST00000488099.1_1_2:38809156-38812824:-|nuORF ENST00000488099.1_1_2:38809156-38812824:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.279052734375 2 515.279452 1028.54435 -0.32142 -0.00016562 0.59774 0.000308 0.27632 0.00014238 515.2798703688176 33.668 0.37703 33.509 33.323 33.7 -0.15918 34 15 3 0 0 0 0.80044 1 17649 17649 6.3541 0.59368 1 4057700 76799 14215 51285 52389 89462 89462 0.03122081514038655 YARVSHLYLL 10 Unmodified _YARVSHLYLL_ 0 0 0 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2364807128906 3 412.236274 1233.68699 0.18003 7.4214E-05 0.3927 0.00016188 0.57272 0.0002361 412.23643205717065 54.824 0.40207 54.757 54.579 54.981 -0.066936 74 19 5 0 0 0 0.24511 1 29726 29726 30.703 3.4802 1 143520000 + 76800 21586 51286 52390 89463 89463 0.07949669185404673 YARWNASDF 9 Unmodified _YARWNASDF_ 0 0 0 REV__ENSG00000157933|ENST00000378536|SKI REV__ENSG00000157933|ENST00000378536|SKI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2564086914062 2 565.256705 1128.49886 0.2849 0.00016104 -1.2629 -0.00071388 -0.97804 -0.00055284 565.2560329186657 62.935 0.54531 62.935 62.749 63.295 0 52 22 4 0 0 0 0.39863 1 35169 35169 12.532 0 1 7817600 + 76801 21407 51287 52391 89464 89464 -0.06025188739022269 YARYYSQI 8 Unmodified _YARYYSQI_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7468872070312 2 532.263999 1062.51345 0.1103 5.871E-05 1.755 0.00093413 1.8653 0.00099284 532.2634904302219 70.422 0.27773 69.943 69.693 69.971 -0.47903 14 12 2 0 0 0 8.7369 1 38404 38404 15.768 0 1 1079600 + 76802 17400 51288 52392 89465 89465 -0.015311165908542534 YASECAQMF 9 Unmodified _YASECAQMF_ 0 0 0 REV__ENSG00000065600|ENST00000261455|PACC1 REV__ENSG00000065600|ENST00000261455|PACC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2053833007812 2 525.206978 1048.3994 NaN NaN NaN NaN NaN NaN NaN 59.433 1 59.433 58.933 59.933 0 0 0 0 0.57317 1 33114 33114 13.508 2.684 1 + 76803 17382 51289 52393 89466 89466 -0.12286090739621613 YASFSMWCFIA 11 Unmodified _YASFSMWCFIA_ 0 0 0 REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF REV__ENST00000574439.5_1_15:74472423-74490170:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.287109375 2 663.288302 1324.56205 0.10445 6.9278E-05 -1.3348 -0.00088534 -1.2303 -0.00081606 663.2868724782251 60.205 0.23852 59.714 59.607 59.845 -0.49079 15 11 2 0 0 0 0.6249 1 32786 32786 10.074 0.6908 1 2576200 + 76804 20278 51290 52394 89467 89467 -0.08724707337637483 YASIDRVYHGI 11 Unmodified _YASIDRVYHGI_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 431.874267578125 3 431.891055 1292.65134 -0.2644 -0.00011419 -0.22373 -9.6628E-05 -0.48813 -0.00021082 431.89197326969514 21.955 0.87199 21.955 21.802 22.674 0 96 63 2 0 0 0 0.30533 1 11480 11480 1.4551 0.12547 1 1079600 + 76805 21769 51291 52395 89468 89468 0.016715869377549097 YASKKKDEL 9 Unmodified _YASKKKDEL_ 0 0 0 ENST00000472088.1_1_8:81213617-81213713:+|nuORF ENST00000472088.1_1_8:81213617-81213713:+|nuORF ENST00000472088.1_1_8:81213617-81213713:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.2015686035156 3 361.201118 1080.58152 -0.59443 -0.00021471 0.93027 0.00033601 0.33584 0.0001213 361.20150627236933 15.905 0.24147 15.905 15.73 15.972 0 114 54 3 0 0 0 0.52844 1 7725 7725 5.7319 0.83484 1 1662100 76806 13893 51292 52396 89469 89469 0.04445708269122406 YASLLGGVF 9 Unmodified _YASLLGGVF_ 0 0 0 REV__nc|ENSG00000111885|P33908-2|MAN1A1 REV__nc|ENSG00000111885|P33908-2|MAN1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.7530822753906 2 463.752736 925.490919 0.68272 0.00031662 -0.96963 -0.00044967 -0.28691 -0.00013305 463.75236787337315 80.986 0.33089 80.494 80.251 80.582 -0.49247 32 14 3 0 0 0 0.25297 1 44308 44308 19.439 0 1 4350400 + 76807 18776 51293 52397 89470 89470 0.025192840115323634 YASLLGGVF 9 Unmodified _YASLLGGVF_ 0 0 0 REV__nc|ENSG00000111885|P33908-2|MAN1A1 REV__nc|ENSG00000111885|P33908-2|MAN1A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 463.752736 925.490919 0.68272 0.00031662 -0.96963 -0.00044967 -0.28691 -0.00013305 463.75236787337315 80.986 0.33089 80.494 80.251 80.582 -0.49247 0 0 NaN 19.439 32 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4350400 + 76808 18776 51293 52397 0.025192840115323634 YASLMAKY 8 Unmodified _YASLMAKY_ 0 0 0 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 ENSG00000166159|ENST00000299194|LRTM2 MSMS AL20221201_MKP_PDAC_01 4 473.7404479980469 2 473.738771 945.462989 NaN NaN NaN NaN NaN NaN NaN 29.396 1 26.095 25.595 26.595 -3.3016 0 0 0 0.93066 1 16508 16508 14.582 2.0501 1 76809 7440 51294 52398 89471 89471 -0.0119236224022643 YASQETFGF 9 Unmodified _YASQETFGF_ 0 0 0 ENSG00000101460|ENST00000360668|MAP1LC3A;nc|ENSG00000101460|Q9H492-2|MAP1LC3A ENSG00000101460|ENST00000360668|MAP1LC3A ENSG00000101460|ENST00000360668|MAP1LC3A MSMS AL20221201_MKP_PDAC_01 4 525.2325439453125 2 525.232364 1048.45018 NaN NaN NaN NaN NaN NaN NaN 80.245 1 74.069 73.569 74.569 -6.1757 0 0 0 0.6032 1 52640 52640 12.532 0 1 76810 1971 51295 52399 89472 89472 -0.07211102098767697 YASSRREAY 9 Unmodified _YASSRREAY_ 0 0 0 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 ENSG00000183856|ENST00000361170|IQGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7685546875 2 551.767437 1101.52032 0.77253 0.00042626 0.42118 0.0002324 1.1937 0.00065865 551.7671220263753 63.258 0.48995 57.082 56.916 57.405 -6.1757 49 28 2 0 0 0 0.2143 1 41013 41013 21.747 1.293 1 34473000 76811 9204 51296 52400 89473 89473 -0.026378037102858798 YASSSVQDF 9 Unmodified _YASSSVQDF_ 0 0 0 ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;ENST00000482116.1_1_13:76423246-76430812:+|nuORF ENSG00000136153|ENST00000377534|LMO7 ENSG00000136153|ENST00000377534|LMO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2231750488281 2 502.221997 1002.42944 0.50773 0.00025499 0.68552 0.00034428 1.1932 0.00059927 502.22231388880283 38.114 0.2566 38.114 37.947 38.204 0 27 12 3 0 0 0 0.042911 1 20292 20292 48.346 26.599 1 8378700 76812 4794 51297 52401 89474 89474 -0.07167692478424215 YASTYLGSI 9 Unmodified _YASTYLGSI_ 0 0 0 REV__ENSG00000154262|ENST00000284425|ABCA6 REV__ENSG00000154262|ENST00000284425|ABCA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.7451171875 2 487.745108 973.475663 1.1033 0.00053812 -0.03959 -1.931E-05 1.0637 0.00051881 487.7449587332204 61.041 0.36974 54.893 54.706 55.076 -6.1478 31 19 2 0 0 0 0.37804 1 39371 39371 13.508 0 1 37377000 + 76813 21219 51298 52402 89475 89475 -0.012136275763396043 YATEDDRF 8 Unmodified _YATEDDRF_ 0 0 0 ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.7452697753906 2 508.719621 1015.42469 NaN NaN NaN NaN NaN NaN NaN 70.737 1 70.737 70.237 71.237 0 0 0 0 0.9706 1 39408 39408 6.3541 0 1 76814 3079 51299 52403 89476 89476 -0.08240576621187756 YATFIVTNY 9 Unmodified _YATFIVTNY_ 0 0 0 ENST00000575002.5_1_16:4517092-4524613:-|nuORF;ENSG00000153406|ENST00000283429|NMRAL1 ENST00000575002.5_1_16:4517092-4524613:-|nuORF ENST00000575002.5_1_16:4517092-4524613:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2745361328125 2 546.274032 1090.53351 0.60567 0.00033086 0.44673 0.00024404 1.0524 0.0005749 546.2743071511691 68.915 0.28789 68.94 68.818 69.106 0.025154 20 13 2 0 0 0 0.03327 1 37895 37895 53.576 11.481 1 1912000 76815 6264 51300 52404 89477 89477 -0.008133656509016873 YATFTYIEL 9 Unmodified _YATFTYIEL_ 0 0 0 REV__ENST00000304788.3_1_20:25596948-25597023:-|nuORF REV__ENST00000304788.3_1_20:25596948-25597023:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.7841186523438 2 560.78169 1119.54883 0.67419 0.00037807 -1.552 -0.00087033 -0.8778 -0.00049225 560.7819207565149 39.216 0.17449 39.227 39.084 39.259 0.011452 16 7 3 0 0 0 0.48152 1 20899 20899 8.5933 0 1 1141900 + 76816 25360 51301 52405 89478 89478 -0.006164988537193494 YATHPFKF 8 Unmodified _YATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7586059570312 2 505.758352 1009.50215 -0.11582 -5.8575E-05 0.50734 0.00025659 0.39152 0.00019802 505.7586708789632 41.039 0.28149 40.736 40.582 40.863 -0.30304 21 13 2 0 0 0 0.22971 1 21698 21698 65.235 34.598 1 3571300 76817 16120 51302 52406 89479 89479 -0.0022189389434288387 YATHPFKF 8 Unmodified _YATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7585144042969 2 505.758352 1009.50215 0.55562 0.00028101 -0.7422 -0.00037537 -0.18658 -9.4362E-05 505.7579885936192 40.692 0.36897 40.697 40.529 40.898 0.0050545 56 17 4 0 0 0 0.060415 2 21776 21671;21776 128.37 88.416 1 79491000 76818 16120 51302 52406 89480;89481 89481 -0.0022189389434288387 YATHPFKF 8 Unmodified _YATHPFKF_ 0 0 0 nc|ENSG00000111912|Q8NI08-5|NCOA7;nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 nc|ENSG00000111912|Q8NI08-5|NCOA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7582397460938 2 505.758352 1009.50215 0.56978 0.00028817 -0.1721 -8.704E-05 0.39769 0.00020113 505.7582284080516 44.609 0.65408 39.757 39.461 40.115 -4.852 126 49 3 0 0 0 0.05164 3 27104 27104;27234;27355 149.99 102.25 1 143490000 76819 16120 51302 52406 89482;89483;89484 89482 -0.0022189389434288387 YATKISRF 8 Unmodified _YATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2768249511719 2 493.276909 984.539266 NaN NaN NaN NaN NaN NaN NaN 31.099 1 31.099 30.599 31.599 0 0 0 0 0.83735 1 16186 16186 21.537 3.3906 1 76820 797 51303 52407 89485 89485 0.04637777651419128 YATKISRF 8 Unmodified _YATKISRF_ 0 0 0 nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 nc|ENSG00000057757|Q9GZP4-2|PITHD1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 493.7952270507812 2 493.276909 984.539266 0.88367 0.00043589 -1.6689 -0.00082323 -0.78523 -0.00038733 493.2757538800999 34.729 0.2456 30.634 30.473 30.718 -4.0951 22 14 2 0 0 0 8.7369 1 19977 19977 49.933 3.912 1 5513600 76821 797 51303 52407 89486 89486 0.04637777651419128 YATPRCCP 8 Unmodified _YATPRCCP_ 0 0 0 REV__ENSG00000171119|ENST00000303212|NRTN REV__ENSG00000171119|ENST00000303212|NRTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.6994934082031 2 455.699123 909.383693 0.43805 0.00019962 0.38831 0.00017695 0.82637 0.00037657 455.69930126909156 37.881 0.20541 37.881 37.764 37.969 0 17 9 2 0 0 0 0.6895 1 20200 20200 18.135 0 1 1780700 + 76822 22533 51304 52408 89487 89487 -0.07462332466013777 YATRDDLIYT 10 Unmodified _YATRDDLIYT_ 0 0 0 nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000470890.1_1_1:27681884-27683265:-|nuORF nc|ENSG00000142733|O95382-3|MAP3K6 nc|ENSG00000142733|O95382-3|MAP3K6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8048095703125 2 615.803685 1229.59282 1.0248 0.0006311 -0.44445 -0.00027369 0.58038 0.0003574 615.8034529716971 42.876 0.2487 42.876 42.737 42.985 0 35 12 4 0 0 0 0.20771 1 23221 23221 31.268 0 1 13869000 76823 5445 51305 52409 89488 89488 -0.012795144273923142 YAVELVNDSL 10 Unmodified _YAVELVNDSL_ 0 0 0 ENST00000497453.1_1_1:154524878-154531400:-|nuORF;ENSG00000160714|ENST00000292211|UBE2Q1;ENST00000467683.5_1_1:154523946-154525290:-|nuORF;nc|ENSG00000160714|Q7Z7E8-2|UBE2Q1 ENST00000497453.1_1_1:154524878-154531400:-|nuORF ENST00000497453.1_1_1:154524878-154531400:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.78662109375 2 561.787504 1121.56045 0.45509 0.00025566 -1.1536 -0.0006481 -0.69855 -0.00039244 561.786829061612 66.242 0.28056 66.242 66.091 66.372 0 23 12 2 0 0 0 0.2178 1 36932 36932 32.305 9.5692 1 2330500 76824 6747 51306 52410 89489 89489 0.0045369816962193 YAVEMYFEG 9 Unmodified _YAVEMYFEG_ 0 0 0 REV__ENST00000337386.9_2_2:191514082-191514651:+|nuORF REV__ENST00000337386.9_2_2:191514082-191514651:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 370.1591186523438 3 370.160042 1107.4583 NaN NaN NaN NaN NaN NaN NaN 41.601 1 41.601 41.101 42.101 0 0 0 0 0.7453 1 22457 22457 4.897 0 1 + 76825 25662 51307 52411 89490 89490 -0.09113291173662219 YAVGDVEKM 9 Unmodified _YAVGDVEKM_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23 ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MSMS AL20221201_MKP_PDAC_01 4 506.2442626953125 2 506.244418 1010.47428 NaN NaN NaN NaN NaN NaN NaN 43.01 1 38.325 37.825 38.825 -4.6846 0 0 0 0.13831 1 26059 26059 38.176 5.8701 1 76826 1638 51308 52412 89491 89491 -0.030535849367424817 YAVLKHFR 8 Unmodified _YAVLKHFR_ 0 0 0 REV__ENSG00000074771|ENST00000159060|NOX3 REV__ENSG00000074771|ENST00000159060|NOX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2997436523438 2 517.300719 1032.58688 NaN NaN NaN NaN NaN NaN NaN 29.133 1 29.163 28.663 29.663 0.030106 0 0 0 0.97444 1 15189 15189 2.8892 0 1 + 76827 17559 51309 52413 89492 89492 0.07189476642270165 YAVMISIEE 9 Unmodified _YAVMISIEE_ 0 0 0 REV__nc|ENSG00000152061|Q5R372-9|RABGAP1L REV__nc|ENSG00000152061|Q5R372-9|RABGAP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.5099487304688 3 352.175692 1053.50525 -0.568 -0.00020004 0.11494 4.0479E-05 -0.45307 -0.00015956 352.1751193149575 19.121 0.11691 19.144 19.088 19.205 0.023106 10 5 3 0 0 0 0.57757 1 9630 9630 2.7352 0 1 312110 + 76828 29708 51310 52414 89493 89493 -0.019364316224937284 YAVNRRLRA 9 Unmodified _YAVNRRLRA_ 0 0 0 ENSG00000147378|ENST00000370350|FATE1 ENSG00000147378|ENST00000370350|FATE1 ENSG00000147378|ENST00000370350|FATE1 MSMS AL20221201_MKP_PDAC_01 4 559.8299560546875 2 559.830706 1117.64686 NaN NaN NaN NaN NaN NaN NaN 20.999 1 18.306 17.806 18.806 -2.693 0 0 0 0.84369 1 11212 11212 2.3027 0 1 76829 5842 51311 52415 89494 89494 0.09274167305488845 YAVPSSPQL 9 Unmodified _YAVPSSPQL_ 0 0 0 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 REV__nc|ENSG00000166049|Q8IV76-2|PASD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2542724609375 2 481.2531 960.491647 0.68185 0.00032814 1.6332 0.00078599 2.3151 0.0011141 481.25380243499103 66.874 0.33482 60.698 60.537 60.872 -6.1757 26 18 2 0 0 0 0.047196 1 43539 43539 46.021 3.9264 1 15365000 + 76830 22079 51312 52416 89495 89495 0.00982078660570096 YAVQGARFF 9 Unmodified _YAVQGARFF_ 0 0 0 REV__ENSG00000167306|ENST00000285039|MYO5B;REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A;REV__ENSG00000128833|ENST00000261839|MYO5C REV__ENSG00000128833|ENST00000261839|MYO5C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 529.7754516601562 2 529.774534 1057.53451 NaN NaN NaN NaN NaN NaN NaN 36.255 1 36.28 35.78 36.78 0.024967 0 0 0 0.7243 1 19204 19204 8.5933 1.304 1 + 76831 19637;23935;22202 51313 52417 89496 89496 0.00804893508643545 YAVQLPRLY 9 Unmodified _YAVQLPRLY_ 0 0 0 REV__GFM2|p.G558R|1|0.2|ENSG00000164347|chr5:74730314-74730314|C/T|missense_variant REV__GFM2|p.G558R|1|0.2|ENSG00000164347|chr5:74730314-74730314|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.8226928710938 2 561.818941 1121.62333 0.34036 0.00019122 2.6883 0.0015103 3.0286 0.0017015 561.8203431073753 35.816 0.16293 35.841 35.786 35.949 0.024967 11 7 2 0 0 0 0.19127 1 18957 18957 13.508 1.8676 1 2856600 + 76832 29350 51314 52418 89497 89497 0.06738308748322197 YAVRDREMF 9 Unmodified _YAVRDREMF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.1944274902344 3 396.193969 1185.56008 1.3154 0.00052114 0.21739 8.6127E-05 1.5328 0.00060727 396.19424145768596 37.068 0.3199 32.785 32.571 32.891 -4.2835 33 19 2 0 0 0 0.46501 1 21682 21682 9.544 4.4965 1 9816600 76833 6109 51315 52419 89498 89498 -0.025280000312250195 YAVRYYDF 8 Unmodified _YAVRYYDF_ 0 0 0 REV__TNR|p.S897A|1|0.17|ENSG00000116147|chr1:175363726-175363726|A/C|missense_variant REV__TNR|p.S897A|1|0.17|ENSG00000116147|chr1:175363726-175363726|A/C|missense_variant MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7388305664062 2 548.758549 1095.50255 0.2748 0.0001508 2.763 0.0015162 3.0378 0.001667 548.7600112543312 67.006 0.29623 66.523 66.314 66.61 -0.48323 17 13 2 0 0 0 8.7369 1 36531 36531 10.183 3.4602 1 1041200 + 76834 30122 51316 52420 89499 89499 -0.041385189651464316 YAWDQSEIWP 10 Unmodified _YAWDQSEIWP_ 0 0 0 REV__nc|ENSG00000168610|P40763-3|STAT3 REV__nc|ENSG00000168610|P40763-3|STAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.7908325195312 2 647.790578 1293.5666 0.26433 0.00017123 -0.066879 -4.3323E-05 0.19746 0.00012791 647.7902956288787 96.098 0.33921 95.793 95.617 95.957 -0.30472 47 17 3 0 0 0 0.70951 2 52442 52442;52535 1.8442 0 1 2271200 + 76835 22327 51317 52421 89500;89501 89500 -0.06843783598856135 YAWESSAGGSF 11 Unmodified _YAWESSAGGSF_ 0 0 0 ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1;ENSG00000080824|ENST00000216281|HSP90AA1 ENSG00000096384|ENST00000371646|HSP90AB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2446899414062 2 581.246003 1160.47745 0.4538 0.00026377 -1.734 -0.0010079 -1.2802 -0.0007441 581.2457234597308 88.053 0.21436 87.549 87.46 87.675 -0.50423 13 8 2 0 0 0 0.73115 1 48192 48192 1.3295 0.63916 1 321550 76836 1671;1308 51318 52422 89502 89502 -0.09636618558374721 YAWREEHHESI 11 Unmodified _YAWREEHHESI_ 0 0 0 ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B ENSG00000189045|ENST00000601380|ANKDD1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2254028320312 3 486.224985 1455.65313 0.60243 0.00029292 -0.62181 -0.00030234 -0.019383 -9.4243E-06 486.224665058601 52.135 0.50981 51.702 51.4 51.909 -0.43367 59 25 3 0 0 0 0.71036 1 28048 28048 2.8433 2.3373 1 3140800 76837 9723 51319 52423 89503 89503 -0.05647404044270843 YAWVYYHL 8 Unmodified _YAWVYYHL_ 0 0 0 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 ENSG00000119917|ENST00000371818|IFIT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7732543945312 2 557.77146 1113.52837 NaN NaN NaN NaN NaN NaN NaN 72.245 1 72.287 71.787 72.787 0.041565 0 0 0 0.48318 1 39780 39780 41.817 14.934 1 76838 3479 51320 52424 89504 89504 -0.023856247228650318 YAYDGKDYLA 10 Unmodified _YAYDGKDYLA_ 0 0 0 nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G nc|ENSG00000204632|P17693-4|HLA-G nc|ENSG00000204632|P17693-4|HLA-G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7725830078125 2 589.771854 1177.52915 0.13567 8.0015E-05 1.0706 0.00063142 1.2063 0.00071144 589.7725175652524 38.083 0.29819 38.083 37.885 38.184 0 43 14 4 0 0 0 0.14688 1 20276 20276 40.239 0 1 12329000 76839 10313 51321 52425 89505 89505 -0.052508748644640946 YAYDGKDYLAL 11 Unmodified _YAYDGKDYLAL_ 0 0 0 nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G nc|ENSG00000204632|P17693-4|HLA-G nc|ENSG00000204632|P17693-4|HLA-G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3121337890625 2 646.313886 1290.61322 NaN NaN NaN NaN NaN NaN NaN 57.138 1 57.138 56.638 57.638 0 0 0 0 0.88164 1 31792 31792 8.1555 0 1 76840 10313 51322 52426 89506 89506 -0.020463437675516616 YAYLFHSR 8 Unmodified _YAYLFHSR_ 0 0 0 REV__ENSG00000133962|ENST00000256343|CATSPERB REV__ENSG00000133962|ENST00000256343|CATSPERB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8471374511719 3 352.846898 1055.51886 NaN NaN NaN NaN NaN NaN NaN 18.886 1 18.886 18.386 19.386 0 0 0 0 0.97444 1 9417 9417 0.45834 0 1 + 76841 19943 51323 52427 89507 89507 -0.006673930083934465 YAYLLPSMY 9 Oxidation (M) _YAYLLPSM(Oxidation (M))Y_ YAYLLPSM(1)Y YAYLLPSM(57)Y 0 0 1 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7710571289062 2 568.770268 1135.52598 0.33862 0.00019259 1.2855 0.00073115 1.6241 0.00092374 568.771134253605 70.456 0.63478 69.978 69.538 70.173 -0.47735 84 49 2 0 0 0 0.027803 2 38483 38383;38483 56.541 24.236 1 6766700 76842 4951 51324 52428 89508;89509 89509 904 -0.03635841242839888 YAYLLPSMY 9 Oxidation (M) _YAYLLPSM(Oxidation (M))Y_ YAYLLPSM(1)Y YAYLLPSM(57)Y 0 0 1 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.771240234375 2 568.770268 1135.52598 0.45311 0.00025771 0.24275 0.00013807 0.69586 0.00039578 568.7703995397244 69.595 0.23275 69.626 69.514 69.747 0.030914 26 11 3 0 0 0 0.027803 1 38247 38247 56.541 24.236 1 6608800 76843 4951 51324 52428 89510 89510 904 -0.03635841242839888 YAYLLPSMY 9 Oxidation (M) _YAYLLPSM(Oxidation (M))Y_ YAYLLPSM(1)Y YAYLLPSM(57)Y 0 0 1 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.7719116210938 2 568.770268 1135.52598 0.52786 0.00030023 0.84927 0.00048304 1.3771 0.00078327 568.770601568128 77.206 0.76015 71.03 70.719 71.479 -6.1757 79 43 2 0 0 0 0.027803 3 50396 50396;50512;50634 56.541 18.567 1 19355000 76844 4951 51324 52428 89511;89512;89513 89511 904 -0.03635841242839888 YAYMEEGL 8 Unmodified _YAYMEEGL_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.209716796875 2 488.210043 974.405534 0.60108 0.00029346 -3.8524 -0.0018808 -3.2514 -0.0015873 488.208265821235 57.258 0.16956 57.258 57.201 57.371 0 12 7 2 0 0 0 0.80143 1 31885 31885 5.7604 0.52976 1 1472900 + 76845 20434 51325 52429 89514 89514 -0.0826924923644583 YAYPHLTI 8 Unmodified _YAYPHLTI_ 0 0 0 REV__nc|ENSG00000187742|Q96T21-3|SECISBP2 REV__nc|ENSG00000187742|Q96T21-3|SECISBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2542114257812 2 489.258185 976.501818 NaN NaN NaN NaN NaN NaN NaN 29.62 1 29.62 29.12 30.12 0 0 0 0 0.73801 1 15349 15349 26.341 1.6674 1 + 76846 23656 51326 52430 89515 89515 0.01262686385791767 YAYPVERF 8 Unmodified _YAYPVERF_ 0 0 0 REV__ENSG00000157227|ENST00000311852|MMP14 REV__ENSG00000157227|ENST00000311852|MMP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7586669921875 2 522.761092 1043.50763 -0.26943 -0.00014085 -3.6523 -0.0019093 -3.9217 -0.0020501 522.759364380756 30.004 0.20987 30.004 29.847 30.057 0 15 9 2 0 0 0 0.78849 1 15590 15590 9.3474 0.75416 1 1214800 + 76847 21373 51327 52431 89516 89516 -0.01238215102534923 YAYTYVYI 8 Unmodified _YAYTYVYI_ 0 0 0 REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF REV__ENST00000407010.6_2_7:16128723-16129239:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2579345703125 2 528.257851 1054.50115 0.29598 0.00015635 -1.1477 -0.00060629 -0.85174 -0.00044994 528.2571819067048 76.05 0.44076 75.57 75.346 75.787 -0.47945 60 18 4 0 0 0 0.80624 1 41722 41722 2.8892 0.58649 1 7183300 + 76848 26664 51328 52432 89517 89517 -0.023921530539155356 YAYVDQHDF 9 Unmodified _YAYVDQHDF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.248046875 2 579.248546 1156.48254 -0.30231 -0.00017511 0.13706 7.9391E-05 -0.16525 -9.5722E-05 579.248728195833 41.397 0.28436 41.397 41.196 41.48 0 36 13 4 0 0 0 0.0086722 1 22278 22278 88.954 69.697 1 28923000 76849 944 51329 52433 89518 89518 -0.08944314695781941 YAYVDQHDF 9 Unmodified _YAYVDQHDF_ 0 0 0 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 ENSG00000066777|ENST00000262215|ARFGEF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.25048828125 2 579.248546 1156.48254 1.006 0.00058272 1.3469 0.0007802 2.3529 0.0013629 579.2491796055001 47.289 0.50861 42.208 41.955 42.463 -5.0805 65 34 3 0 0 0 0.013041 1 29324 29324 71.922 35.795 1 28547000 76850 944 51329 52433 89519 89519 -0.08944314695781941 YAYWVCTTL 9 Unmodified _YAYWVCTTL_ 0 0 0 ENSG00000198677|ENST00000358746|SKIC3;ENST00000508181.5_1_5:94842662-94852339:-|nuORF ENSG00000198677|ENST00000358746|SKIC3 ENSG00000198677|ENST00000358746|SKIC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.1776733398438 3 373.844166 1118.51067 0.53779 0.00020105 -4.3062 -0.0016099 -3.7685 -0.0014088 373.84232635228847 27.913 0.15274 27.867 27.775 27.928 -0.046408 8 5 2 0 0 0 0.52844 1 14407 14407 5.7319 2.7366 1 1919300 76851 10120 51330 52434 89520 89520 -0.04384708040015539 YAYYKHFF 8 Unmodified _YAYYKHFF_ 0 0 0 REV__ENSG00000012232|ENST00000220562|EXTL3 REV__ENSG00000012232|ENST00000220562|EXTL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.2741088867188 2 569.77146 1137.52837 0.34401 0.00019601 -0.70735 -0.00040303 -0.36334 -0.00020702 569.7747894053598 90.328 0.61754 90.328 89.916 90.533 0 79 41 3 0 0 0 0.77907 1 49943 49943 10.183 0.10947 1 2635200 + 76852 17066 51331 52435 89521 89521 -0.03489624722874396 YCAEIAHNV 9 Carbamidomethyl (C) _YC(Carbamidomethyl (C))AEIAHNV_ YC(1)AEIAHNV YC(120)AEIAHNV 0 1 0 ENST00000458542.1_1_3:25791186-25791384:+|nuORF;ENSG00000144713|ENST00000429711|RPL32 ENST00000458542.1_1_3:25791186-25791384:+|nuORF ENST00000458542.1_1_3:25791186-25791384:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7451782226562 2 538.745116 1075.47568 0.64509 0.00034754 -0.66659 -0.00035912 -0.021495 -1.158E-05 538.745054063277 35.316 1.0739 31.221 30.565 31.639 -4.0951 201 64 4 0 0 0 0.0055767 2 20595 20464;20595 115.69 58.221 1 134730000 76853 5636 51332 52436 89522;89523 89523 572 -0.05903950847982742 YCASCEAEDL 10 Unmodified _YCASCEAEDL_ 0 0 0 nc|ENSG00000214290|A8K830-1|POU2AF3;ENSG00000214290|ENST00000610738|POU2AF3;nc|ENSG00000214290|A8K830-4|POU2AF3;nc|ENSG00000214290|A8K830-3|POU2AF3 nc|ENSG00000214290|A8K830-1|POU2AF3 nc|ENSG00000214290|A8K830-1|POU2AF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.20556640625 2 552.204632 1102.39471 0.90497 0.00049973 0.077141 4.2597E-05 0.98211 0.00054233 552.2046332714184 50.971 0.93862 50.971 50.622 51.561 0 80 48 3 0 0 0 0.65502 1 28030 28030 7.9102 0.62092 1 5318100 76854 10488 51333 52437 89524 89524 -0.1523901967304937 YCCCCLCC 8 Unmodified _YCCCCLCC_ 0 0 0 ENSG00000101152|ENST00000360864|DNAJC5;nc|ENSG00000101152|Q9H3Z4-2|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 ENSG00000101152|ENST00000360864|DNAJC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 912.9174194335938 1 913.220341 912.213064 2.5057 0.0022883 -0.84706 -0.00077355 1.6587 0.0015147 913.2199319628411 95.987 0.11201 95.991 95.892 96.004 0.004158 6 3 2 0 0 0 0.81107 1 53309 53309 0 0 1 1458700 76855 1920 51334 52438 89525 89525 -0.246553937673184 YCCCKGKL 8 Unmodified _YCCCKGKL_ 0 0 0 REV__ENST00000474266.1_1_X:20222119-20236956:-|nuORF REV__ENST00000474266.1_1_X:20222119-20236956:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.205810546875 2 459.205727 916.3969 0.91646 0.00042084 0.098787 4.5363E-05 1.0152 0.00046621 459.2053988040505 49.522 0.29526 49.522 49.333 49.629 0 28 12 3 0 0 0 0.80143 1 27249 27249 5.7604 0 1 4853200 + 76856 27561 51335 52439 89526 89526 -0.06464217678274053 YCCCPPPC 8 Unmodified _YCCCPPPC_ 0 0 0 ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF ENST00000529601.5_1_11:64879440-64881038:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 443.1416320800781 2 443.141738 884.268923 NaN NaN NaN NaN NaN NaN NaN 0.39977 1 -2.0822 -2.5822 -1.5822 -2.482 0 0 0 0.97444 1 212 212 0 0 1 76857 14874 51336 52440 89527 89527 -0.17784101263828234 YCELFAFNNF 10 Unmodified _YCELFAFNNF_ 0 0 0 REV__ENST00000422087.5_1_7:108158660-108166605:-|nuORF REV__ENST00000422087.5_1_7:108158660-108166605:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.186767578125 3 423.186592 1266.53795 0.31448 0.00013308 -0.18908 -8.0015E-05 0.1254 5.3069E-05 423.1866450123034 59.589 0.39434 59.099 58.898 59.293 -0.49079 29 18 2 0 0 0 0.7191 1 32408 32408 0.77653 0.078866 1 1884200 + 76858 26850 51337 52441 89528 89528 -0.08466224499647979 YCFGSSSVF 9 Unmodified _YCFGSSSVF_ 0 0 0 ENST00000343307.4_1_13:31904450-31904543:+|nuORF ENST00000343307.4_1_13:31904450-31904543:+|nuORF ENST00000343307.4_1_13:31904450-31904543:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 498.710205078125 2 498.710211 995.405868 0.80913 0.00040352 0.49457 0.00024665 1.3037 0.00065017 498.7103298246939 43.002 0.24913 43.002 42.816 43.065 0 21 12 2 0 0 0 0.37804 1 23320 23320 13.508 3.3245 1 3509100 76859 11999 51338 52442 89529 89529 -0.09201829516598536 YCFYQLEAQ 9 Unmodified _YCFYQLEAQ_ 0 0 0 ENST00000484991.1_1_12:111890502-111891686:-|nuORF ENST00000484991.1_1_12:111890502-111891686:-|nuORF ENST00000484991.1_1_12:111890502-111891686:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 388.8390502929688 3 388.839192 1163.49575 NaN NaN NaN NaN NaN NaN NaN 3.0374 1 0.55545 0.055454 1.0555 -2.482 0 0 0 0.85852 1 1547 1547 0.20686 0 1 76860 14161 51339 52443 89530 89530 -0.07946199908042217 YCGARLEP 8 Unmodified _YCGARLEP_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.7179870605469 2 454.71837 907.422187 0.63503 0.00028876 -1.7942 -0.00081585 -1.1591 -0.00052709 454.7172390340608 79.181 0.45604 79.236 78.988 79.445 0.054977 47 17 3 0 0 0 0.80975 1 43799 43799 0.79363 0.10326 1 24132000 76861 7828 51340 52444 89531 89531 -0.03522703559838192 YCGLFRPQSSV 11 Unmodified _YCGLFRPQSSV_ 0 0 0 REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF REV__ENST00000340385.5_1_1:173457036-173457291:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.5410461425781 3 419.541257 1255.60194 -0.18422 -7.7288E-05 0.48141 0.00020197 0.29719 0.00012468 419.5415199181116 21.923 0.48544 21.946 21.829 22.315 0.022896 53 21 4 0 0 0 0.71728 1 11121 11121 2.6312 0.72486 1 4217700 + 76862 25691 51341 52445 89532 89532 -0.01563444342718867 YCLAVLGY 8 Unmodified _YCLAVLGY_ 0 0 0 ENST00000476117.1_1_7:104808473-104809645:-|nuORF ENST00000476117.1_1_7:104808473-104809645:-|nuORF ENST00000476117.1_1_7:104808473-104809645:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 451.2262573242188 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 16.094 1 16.094 15.594 16.594 0 0 0 0 0.97444 1 7817 7817 0.79363 0 1 76863 13974 51342 52446 89533 89533 -0.012677472689460956 YCLLCEYTF 9 Unmodified _YCLLCEYTF_ 0 0 0 REV__ENST00000446465.2_1_3:136574579-136574645:+|nuORF REV__ENST00000446465.2_1_3:136574579-136574645:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7501220703125 2 577.748479 1153.4824 0.42467 0.00024535 2.1963 0.0012689 2.621 0.0015143 577.7497244124987 51.985 0.32808 51.551 51.381 51.709 -0.43367 47 16 4 0 0 0 0.49272 1 28008 28008 7.9102 0.62092 1 7575600 + 76864 27142 51343 52447 89534 89534 -0.08819774011635673 YCLPCFYF 8 Unmodified _YCLPCFYF_ 0 0 0 ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2225341796875 2 528.2219 1054.42925 0.40393 0.00021336 0.63776 0.00033688 1.0417 0.00055024 528.2223912511218 79.057 0.44114 79.057 78.762 79.203 0 72 20 5 0 0 0 0.80624 1 43808 43808 2.8892 0.31174 1 3795000 76865 14927 51344 52448 89535 89535 -0.09579107003651188 YCLPCFYF 8 Unmodified _YCLPCFYF_ 0 0 0 ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF ENST00000532333.5_1_11:65729206-65731694:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7919921875 2 528.2219 1054.42925 0.538 0.00028419 1.6034 0.00084694 2.1414 0.0011311 528.2228579803825 61.217 0.34224 61.217 61.024 61.366 0 23 14 2 0 0 0 8.7369 1 34163 34163 2.8892 0.31174 1 653550 76866 14927 51344 52448 89536 89536 -0.09579107003651188 YCLYMGELF 9 Unmodified _YCLYMGELF_ 0 0 0 REV__ENST00000298125.6_1_13:52334347-52334536:+|nuORF REV__ENST00000298125.6_1_13:52334347-52334536:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.7853088378906 3 380.169773 1137.48749 NaN NaN NaN NaN NaN NaN NaN 15.409 1 12.882 12.382 13.382 -2.5273 0 0 0 0.84369 1 7903 7903 1.1933 0.12188 1 + 76867 25288 51345 52449 89537 89537 -0.07575470149026842 YCMTFIFIAK 10 Unmodified _YCMTFIFIAK_ 0 0 0 ENSG00000164082|ENST00000395052|GRM2;ENST00000296479.9_1_3:51747995-51752125:+|nuORF ENSG00000164082|ENST00000395052|GRM2 ENSG00000164082|ENST00000395052|GRM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.8106689453125 2 618.811413 1235.60827 NaN NaN NaN NaN NaN NaN NaN 88.317 1 88.317 87.817 88.817 0 0 0 0 1.0019 1 48887 48887 0.45834 0.10771 1 76868 7135 51346 52450 89538 89538 -0.00010642435563568142 YCMTHHDSF 9 Unmodified _YCMTHHDSF_ 0 0 0 REV__ENSG00000110799|ENST00000261405|VWF REV__ENSG00000110799|ENST00000261405|VWF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.716064453125 2 570.715501 1139.41645 0.92171 0.00052604 1.7554 0.0010019 2.6771 0.0015279 570.7163165382797 81.398 0.26933 80.906 80.77 81.04 -0.49248 19 11 2 0 0 0 0.60285 1 44564 44564 0.6015 0 1 683790 + 76869 18723 51347 52451 89539 89539 -0.14768170133834246 YCPLLFPG 8 Unmodified _YCPLLFPG_ 0 0 0 REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP REV__nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.230712890625 2 455.230582 908.446611 NaN NaN NaN NaN NaN NaN NaN 16.583 1 16.588 16.088 17.088 0.0050564 0 0 0 0.97444 1 8322 8322 0.79363 0 1 + 76870 23822 51348 52452 89540 89540 -0.011274434063238914 YCQAYYTMQA 10 Unmodified _YCQAYYTMQA_ 0 0 0 REV__nc|ENSG00000097033|Q9Y371-2|SH3GLB1 REV__nc|ENSG00000097033|Q9Y371-2|SH3GLB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.5039367675781 3 414.503703 1240.48928 -0.54295 -0.00022506 -0.53365 -0.0002212 -1.0766 -0.00044625 414.50365877392017 41.46 0.30074 41.46 41.325 41.626 0 49 15 5 0 0 0 0.63399 1 22323 22323 5.4027 0 1 67405000 + 76871 17965 51349 52453 89541 89541 -0.1213446113106329 YCQNYKTVN 9 Unmodified _YCQNYKTVN_ 0 0 0 ENST00000530536.5_1_6:133081825-133084533:-|nuORF ENST00000530536.5_1_6:133081825-133084533:-|nuORF ENST00000530536.5_1_6:133081825-133084533:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1733703613281 3 378.174574 1131.50189 NaN NaN NaN NaN NaN NaN NaN 45.382 1 45.382 44.882 45.882 0 0 0 0 0.7453 1 24734 24734 4.897 0.36815 1 76872 14893 51350 52454 89542 89542 -0.058596816765202675 YCSAEEFGAFP 11 Unmodified _YCSAEEFGAFP_ 0 0 0 REV__ENST00000498360.5_1_1:225142255-225148920:+|nuORF REV__ENST00000498360.5_1_1:225142255-225148920:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 407.5031433105469 3 407.502468 1219.48558 0.17608 7.1754E-05 0.89534 0.00036485 1.0714 0.00043661 407.5027563547964 38.247 0.54938 38.247 38.049 38.598 0 73 38 2 0 0 0 0.71036 1 20576 20576 1.3296 0 1 135190000 + 76873 27994 51351 52455 89543 89543 -0.11538807633269244 YCSEEGDY 8 Unmodified _YCSEEGDY_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 483.1641235351562 2 483.16329 964.312028 NaN NaN NaN NaN NaN NaN NaN 91.613 1 91.613 91.113 92.113 0 0 0 0 0.97444 1 50662 50662 0.69038 0 1 + 76874 20632 51352 52456 89544 89544 -0.1715559340954087 YCSEEGDY 8 Unmodified _YCSEEGDY_ 0 0 0 REV__nc|ENSG00000143379|Q15047-3|SETDB1 REV__nc|ENSG00000143379|Q15047-3|SETDB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2982482910156 2 483.16329 964.312028 NaN NaN NaN NaN NaN NaN NaN 102.39 1 102.34 101.84 102.84 -0.045853 0 0 0 0.97444 1 56873 56873 0.6015 0 1 + 76875 20632 51352 52456 89545 89545 -0.1715559340954087 YCTMEVKVSR 10 Unmodified _YCTMEVKVSR_ 0 0 0 ENST00000264993.7_2_3:133306967-133307069:+|nuORF ENST00000264993.7_2_3:133306967-133307069:+|nuORF ENST00000264993.7_2_3:133306967-133307069:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.2013549804688 3 405.866865 1214.57876 -0.61199 -0.00024839 -0.10231 -4.1524E-05 -0.7143 -0.00028991 405.86703421111173 34.906 0.20464 34.906 34.793 34.998 0 28 10 3 0 0 0 0.69377 1 18415 18415 3.5871 2.3937 1 8167400 76876 11324 51353 52457 89546 89546 -0.019942064516953906 YCTMEVKVSR 10 Unmodified _YCTMEVKVSR_ 0 0 0 ENST00000264993.7_2_3:133306967-133307069:+|nuORF ENST00000264993.7_2_3:133306967-133307069:+|nuORF ENST00000264993.7_2_3:133306967-133307069:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.8674926757812 3 405.866865 1214.57876 -0.31113 -0.00012628 -0.13565 -5.5054E-05 -0.44678 -0.00018133 405.86733698218177 35.035 0.20565 34.812 34.711 34.917 -0.2224 24 8 4 0 0 0 0.69377 1 18332 18332 1.7423 0 1 2694200 76877 11324 51353 52457 89547 89547 -0.019942064516953906 YCVNRFSSLL 10 Unmodified _YCVNRFSSLL_ 0 0 0 ENSG00000169371|ENST00000308588|SNUPN ENSG00000169371|ENST00000308588|SNUPN ENSG00000169371|ENST00000308588|SNUPN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2051696777344 3 401.205986 1200.59613 NaN NaN NaN NaN NaN NaN NaN 39.158 1 39.17 38.67 39.67 0.011452 0 0 0 0.96981 1 20849 20849 1.9064 0.1641 1 76878 7869 51354 52458 89548 89548 0.003854571456258782 YCVPKCCV 8 Unmodified _YCVPKCCV_ 0 0 0 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 457.7006225585938 2 457.700277 913.386001 0.81349 0.00037233 0.87942 0.00040251 1.6929 0.00077484 457.70064296431354 47.462 0.2896 47.462 47.29 47.579 0 24 12 3 0 0 0 0.80232 1 25950 25950 5.2307 0 1 2559600 + 76879 24342 51355 52459 89549 89549 -0.07415620052563554 YCVPKCCV 8 Unmodified _YCVPKCCV_ 0 0 0 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 REV__ENSG00000215455|ENST00000400375|KRTAP10-1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 457.700277 913.386001 0.81349 0.00037233 0.87942 0.00040251 1.6929 0.00077484 457.70064296431354 47.462 0.2896 47.462 47.29 47.579 0 0 0 NaN 5.2307 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2559600 + 76880 24342 51355 52459 -0.07415620052563554 YCWDTFVY 8 Unmodified _YCWDTFVY_ 0 0 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1546020507812 3 366.152999 1095.43717 0.073704 2.6987E-05 0.98504 0.00036068 1.0587 0.00038766 366.1545326823605 77.538 0.48123 77.538 77.29 77.771 0 130 35 5 0 0 0 0.80447 1 43139 43139 3.9444 0 1 15537000 76881 8856 51356 52460 89550 89550 -0.10673256482505167 YCYDNIHFM 9 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))YDNIHFM(Oxidation (M))_ YC(1)YDNIHFM YCYDNIHFM(1) YC(74)YDNIHFM YCYDNIHFM(74) 0 1 1 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000454901.1_1_3:172143784-172143991:-|nuORF;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.7518310546875 2 639.749541 1277.48453 0.8253 0.00052799 -0.028988 -1.8545E-05 0.79631 0.00050944 639.7497667063436 54.947 0.24265 49.082 48.943 49.186 -5.8653 24 14 2 0 0 0 0.012148 1 34949 34949 74.423 45.341 1 12148000 76882 1340;4807 51357 52461 89551 89551 121 225 -0.14311345273813458 YCYDNIHFM 9 Carbamidomethyl (C),Oxidation (M) _YC(Carbamidomethyl (C))YDNIHFM(Oxidation (M))_ YC(1)YDNIHFM YCYDNIHFM(1) YC(74)YDNIHFM YCYDNIHFM(74) 0 1 1 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000454901.1_1_3:172143784-172143991:-|nuORF;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1 MSMS AL20221201_MKP_PDAC_01 4 639.7485961914062 2 639.749541 1277.48453 NaN NaN NaN NaN NaN NaN NaN 54.458 1 48.593 48.093 49.093 -5.8653 0 0 0 0.023279 1 34548 34548 74.423 38.379 1 76883 1340;4807 51357 52461 89552 89552 121 225 -0.14311345273813458 YCYDNIHFM 9 Carbamidomethyl (C) _YC(Carbamidomethyl (C))YDNIHFM_ YC(1)YDNIHFM YC(54)YDNIHFM 0 1 0 ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1;ENST00000454901.1_1_3:172143784-172143991:-|nuORF;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1;ENSG00000136261|ENST00000258761|BZW2 ENSG00000082153|ENST00000409600|BZW1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.7520751953125 2 631.752084 1261.48961 0.34157 0.00021579 -0.46103 -0.00029126 -0.11945 -7.5466E-05 631.7521482141078 66.617 0.74852 60.442 60.214 60.962 -6.1757 68 42 3 0 0 0 0.032796 2 43394 43265;43394 53.833 32.82 1 18317000 76884 1340;4807 51357 52462 89553;89554 89554 121 -0.13067041411227365 YCYIFVDNTF 10 Unmodified _YCYIFVDNTF_ 0 0 0 ENST00000535011.6_1_7:128410370-128410973:+|nuORF ENST00000535011.6_1_7:128410370-128410973:+|nuORF ENST00000535011.6_1_7:128410370-128410973:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.7845458984375 2 642.783907 1283.55326 0.70853 0.00045543 -2.0337 -0.0013072 -1.3252 -0.00085179 642.7823659725457 80.358 0.41824 79.869 79.665 80.083 -0.48932 28 16 2 0 0 0 0.6966 1 44005 44005 3.2813 0.78282 1 483620 76885 14964 51358 52463 89555 89555 -0.07717357702472327 YCYKCFLSL 9 Unmodified _YCYKCFLSL_ 0 0 0 ENST00000256646.6_1_1:120455139-120455295:-|nuORF ENST00000256646.6_1_1:120455139-120455295:-|nuORF ENST00000256646.6_1_1:120455139-120455295:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.767822265625 2 570.266838 1138.51912 0.34731 0.00019806 -0.17955 -0.00010239 0.16776 9.5668E-05 570.2667646024338 85.852 0.38947 85.852 85.631 86.02 0 36 16 3 0 0 0 0.55144 1 47532 47532 4.3292 0 1 1066700 76886 11182 51359 52464 89556 89556 -0.044594773950393574 YCYKESGRF 9 Unmodified _YCYKESGRF_ 0 0 0 REV__nc|ENSG00000096696|P15924-2|DSP REV__nc|ENSG00000096696|P15924-2|DSP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7599487304688 2 576.760766 1151.50698 -0.18228 -0.00010513 1.0848 0.00062566 0.9025 0.00052053 576.7605911985731 25.416 0.2233 25.416 25.283 25.507 0 23 10 3 0 0 0 0.49766 1 13011 13011 7.2892 0 1 3892400 + 76887 17963 51360 52465 89557 89557 -0.0627137781386864 YCYVHCYLK 9 Unmodified _YCYVHCYLK_ 0 0 0 nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-3|VPS13B;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;ENST00000521932.1_1_8:100168860-100253210:+|nuORF nc|ENSG00000132549|Q7Z7G8-6|VPS13B nc|ENSG00000132549|Q7Z7G8-6|VPS13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.2698974609375 2 596.269912 1190.52527 NaN NaN NaN NaN NaN NaN NaN 14.038 1 14.045 13.545 14.545 0.0073986 0 0 0 0.85798 1 6944 6944 0.52476 0.066424 1 76888 16193 51361 52466 89558 89558 -0.06236959163538813 YDAANVSLIF 10 Unmodified _YDAANVSLIF_ 0 0 0 ENSG00000174206|ENST00000398055|KICS2 ENSG00000174206|ENST00000398055|KICS2 ENSG00000174206|ENST00000398055|KICS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7877197265625 2 556.784764 1111.55498 1.1424 0.00063607 -0.40427 -0.00022509 0.73812 0.00041098 556.7842893150993 59.314 0.79828 53.239 52.756 53.555 -6.0745 111 43 4 0 0 0 0.085354 1 37803 37803 49.933 2.1843 1 347450000 76889 8401 51362 52467 89559 89559 0.0036601937779323634 YDACVFDSCF 10 Unmodified _YDACVFDSCF_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS AL20221201_MKP_PDAC_01 4 390.5218505859375 3 390.480787 1168.42053 NaN NaN NaN NaN NaN NaN NaN 16.018 1 13.462 12.962 13.962 -2.557 0 0 0 0.96981 1 8267 8267 1.9064 1.1298 1 76890 16496 51363 52468 89560 89560 -0.1569412543076396 YDAEISQIH 9 Unmodified _YDAEISQIH_ 0 0 0 CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2 CON__P35908 CON__P35908 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2564086914062 2 538.256371 1074.49819 0.55056 0.00029634 -0.23198 -0.00012487 0.31858 0.00017148 538.2562976713214 38.964 0.32488 38.964 38.79 39.115 0 38 14 4 0 0 0 0.026499 1 20812 20812 71.922 0 1 16585000 + 76891 177 51364 52469 89561 89561 -0.03608028178700806 YDAFMEKYMK 10 Unmodified _YDAFMEKYMK_ 0 0 0 nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1 nc|ENSG00000100170|P13866-2|SLC5A1 nc|ENSG00000100170|P13866-2|SLC5A1 MSMS AL20221201_MKP_PDAC_01 4 663.3018798828125 2 663.298867 1324.58318 NaN NaN NaN NaN NaN NaN NaN 46.477 1 41.397 40.897 41.897 -5.0805 0 0 0 0.52595 1 28715 28715 24.991 4.5373 1 76892 1765 51365 52470 89562 89562 -0.06612742028778484 YDAGCTFTCEF 11 Unmodified _YDAGCTFTCEF_ 0 0 0 REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.4913940429688 3 419.491463 1255.45256 -0.12089 -5.0711E-05 -0.67847 -0.00028461 -0.79936 -0.00033532 419.49112275057274 31.584 0.21796 31.584 31.463 31.681 0 19 10 3 0 0 0 0.73115 1 16460 16460 0.45452 0.29519 1 1855300 + 76893 29397 51366 52471 89563 89563 -0.1649475774761413 YDAGCTFTCEF 11 Unmodified _YDAGCTFTCEF_ 0 0 0 REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 419.491463 1255.45256 -0.12089 -5.0711E-05 -0.67847 -0.00028461 -0.79936 -0.00033532 419.49112275057274 31.584 0.21796 31.584 31.463 31.681 0 0.11355 0.00036342 NaN 0.45452 19 10 3 NaN NaN NaN NaN 0 NaN NaN 0 1855300 + 76894 29397 51366 52471 -0.1649475774761413 YDAGCTFTCEF 11 Unmodified _YDAGCTFTCEF_ 0 0 0 REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant REV__KCNMB4|p.C76Y|1|0.2|ENSG00000135643|chr12:70366961-70366961|G/A|missense_variant MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 419.491463 1255.45256 1.0408 0.00043661 -1.8561 -0.0007786 -0.81526 -0.00034199 419.49062465667606 35.55 0.17371 31.357 31.252 31.425 -4.1928 -0.11355 -0.0011186 NaN 0.45452 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 6497100 + 76895 29397 51366 52471 -0.1649475774761413 YDANRQCQF 9 Unmodified _YDANRQCQF_ 0 0 0 ENSG00000154734|ENST00000284984|ADAMTS1;ENST00000464589.1_1_21:28212549-28213524:-|nuORF ENSG00000154734|ENST00000284984|ADAMTS1 ENSG00000154734|ENST00000284984|ADAMTS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1668395996094 3 382.16619 1143.47674 0.24328 9.2975E-05 1.9281 0.00073684 2.1713 0.00082982 382.1670438399263 57.958 0.2329 57.958 57.845 58.078 0 14 9 2 0 0 0 0.58865 1 32272 32272 1.0715 0 1 2099700 76896 6346 51367 52472 89564 89564 -0.08925736479068291 YDCTFHDII 9 Unmodified _YDCTFHDII_ 0 0 0 REV__ENSG00000205330|ENST00000642104|OR6C1 REV__ENSG00000205330|ENST00000642104|OR6C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2493896484375 2 563.747324 1125.4801 0.30446 0.00017164 0.56842 0.00032044 0.87288 0.00049208 563.747953839712 76.456 0.36621 76.456 76.271 76.637 0 43 14 4 0 0 0 0.12841 2 42464 42464;42565 30.225 9.7712 1 3036900 + 76897 24222 51368 52473 89565;89566 89565 -0.07762486425076531 YDCTFHDII 9 Unmodified _YDCTFHDII_ 0 0 0 REV__ENSG00000205330|ENST00000642104|OR6C1 REV__ENSG00000205330|ENST00000642104|OR6C1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2493896484375 2 563.747324 1125.4801 0.30446 0.00017164 0.56842 0.00032044 0.87288 0.00049208 563.747953839712 76.456 0.36621 76.456 76.271 76.637 0 43 14 4 0 0 0 0.13712 1 42464 42464 30.225 9.7712 1 3036900 + 76898 24222 51368 52473 89567 89567 -0.07762486425076531 YDCTFHDII 9 Unmodified _YDCTFHDII_ 0 0 0 REV__ENSG00000205330|ENST00000642104|OR6C1 REV__ENSG00000205330|ENST00000642104|OR6C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7479858398438 2 563.747324 1125.4801 -0.07219 -4.0697E-05 1.0315 0.00058148 0.95926 0.00054078 563.7479584098909 76.936 0.44095 76.457 76.235 76.676 -0.47945 51 19 4 0 0 0 0.052168 1 42084 42084 44.407 20.386 1 3445000 + 76899 24222 51368 52473 89568 89568 -0.07762486425076531 YDCTFHDII 9 Unmodified _YDCTFHDII_ 0 0 0 REV__ENSG00000205330|ENST00000642104|OR6C1 REV__ENSG00000205330|ENST00000642104|OR6C1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.747324 1125.4801 -0.07219 -4.0697E-05 1.0315 0.00058148 0.95926 0.00054078 563.7479584098909 76.936 0.44095 76.457 76.235 76.676 -0.47945 0.00035685 0.0002405 NaN 44.407 51 19 4 NaN NaN NaN NaN 0 NaN NaN 0 3445000 + 76900 24222 51368 52473 -0.07762486425076531 YDDITQYGF 9 Unmodified _YDDITQYGF_ 0 0 0 REV__ENSG00000158201|ENST00000289119|ABHD3 REV__ENSG00000158201|ENST00000289119|ABHD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2466430664062 2 561.242929 1120.47131 0.70846 0.00039762 1.3008 0.00073006 2.0092 0.0011277 561.2436605795118 73.81 0.26311 73.81 73.638 73.901 0 21 10 3 0 0 0 0.43463 1 41074 41074 10.824 2.2306 1 832950 + 76901 21422 51369 52474 89569 89569 -0.08411136789914053 YDDITQYGF 9 Unmodified _YDDITQYGF_ 0 0 0 REV__ENSG00000158201|ENST00000289119|ABHD3 REV__ENSG00000158201|ENST00000289119|ABHD3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 561.242929 1120.47131 0.89596 0.00050285 -0.25217 -0.00014153 0.64379 0.00036132 561.2415073341485 74.303 0.19539 73.827 73.714 73.91 -0.47588 0.0083455 -0.0015926 NaN 10.824 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 414510 + 76902 21422 51369 52474 -0.08411136789914053 YDEAAKLF 8 Unmodified _YDEAAKLF_ 0 0 0 REV__ENSG00000149591|ENST00000392951|TAGLN REV__ENSG00000149591|ENST00000392951|TAGLN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7397155761719 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 79.786 1 79.297 78.797 79.797 -0.48932 0 0 0 0.97444 1 43702 43702 2.8892 0 1 + 76903 21008 51370 52475 89570 89570 -0.014416102307677647 YDEEELMESL 10 Unmodified _YDEEELMESL_ 0 0 0 REV__nc|ENSG00000004766|Q96JG6-2|VPS50 REV__nc|ENSG00000004766|Q96JG6-2|VPS50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.26318359375 2 629.263201 1256.51185 0.18916 0.00011903 -1.0322 -0.00064951 -0.84302 -0.00053048 629.2624871050992 85.211 0.31456 85.211 85.097 85.411 0 23 13 2 0 0 0 0.70951 1 47321 47321 1.8442 0 1 580240 + 76904 16947 51371 52476 89571 89571 -0.10614583252413468 YDEEELMESL 10 Unmodified _YDEEELMESL_ 0 0 0 REV__nc|ENSG00000004766|Q96JG6-2|VPS50 REV__nc|ENSG00000004766|Q96JG6-2|VPS50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.2615356445312 2 629.263201 1256.51185 0.26756 0.00016837 0.18432 0.00011598 0.45188 0.00028435 629.2636522383054 85.823 0.46979 85.322 85.127 85.597 -0.5015 51 19 4 0 0 0 0.69064 2 46900 46900;47007 3.9444 0 1 1616100 + 76905 16947 51371 52476 89572;89573 89572 -0.10614583252413468 YDEIDFVF 8 Unmodified _YDEIDFVF_ 0 0 0 REV__ENSG00000010017|ENST00000011619|RANBP9 REV__ENSG00000010017|ENST00000011619|RANBP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2379150390625 2 524.237116 1046.45968 0.64712 0.00033924 0.11159 5.85E-05 0.75871 0.00039774 524.2371911187436 72.757 0.34096 72.757 72.564 72.905 0 47 16 4 0 0 0 0.80232 1 40564 40564 5.2307 0 1 4784600 + 76906 17040 51372 52477 89574 89574 -0.0616933381322724 YDEKKGRETL 10 Unmodified _YDEKKGRETL_ 0 0 0 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8233032226562 2 619.822409 1237.63027 -0.19422 -0.00012038 0.0078967 4.8945E-06 -0.18632 -0.00011549 619.8224063148257 19.846 0.18827 19.846 19.741 19.929 0 38 19 3 0 0 0 0.39689 1 9923 9923 31.268 0 1 4106800 + 76907 24098 51373 52478 89575 89575 0.02095576838269153 YDEKKGRETL 10 Unmodified _YDEKKGRETL_ 0 0 0 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 REV__nc|ENSG00000198919|Q86Y13-2|DZIP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8204345703125 2 619.822409 1237.63027 -0.056699 -3.5143E-05 -0.30043 -0.00018621 -0.35713 -0.00022136 619.822147651654 22.907 0.16314 22.907 22.832 22.995 0 13 9 2 0 0 0 0.61603 1 11665 11665 11.495 2.7493 1 969180 + 76908 24098 51373 52478 89576 89576 0.02095576838269153 YDELCPESSSW 11 Unmodified _YDELCPESSSW_ 0 0 0 REV__ENSG00000172568|ENST00000312349|FNDC9 REV__ENSG00000172568|ENST00000312349|FNDC9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.2593994140625 2 658.260993 1314.50743 0.51385 0.00033825 -1.5768 -0.001038 -1.063 -0.00069971 658.2599343180445 87.137 0.20346 86.632 86.585 86.788 -0.50423 13 7 2 0 0 0 0.71341 1 47698 47698 2.9952 0.93549 1 245070 + 76909 22660 51374 52479 89577 89577 -0.1372404767532771 YDELERYFK 9 Unmodified _YDELERYFK_ 0 0 0 REV__ENSG00000158023|ENST00000288912|CFAP251 REV__ENSG00000158023|ENST00000288912|CFAP251 MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.810546875 2 631.806228 1261.5979 0.84339 0.00053286 2.9976 0.0018939 3.841 0.0024268 631.8075615096058 101.32 0.13065 95.147 95.032 95.163 -6.1757 10 7 2 0 0 0 0.36964 1 67971 67971 13.906 1.3745 1 9483600 + 76910 21413 51375 52480 89578 89578 -0.02243210564756737 YDELFAQLY 9 Unmodified _YDELFAQLY_ 0 0 0 REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2772827148438 2 581.276772 1160.53899 0.97881 0.00056896 2.0193 0.0011738 2.9981 0.0017427 581.277671650103 79.775 0.37551 79.285 79.053 79.428 -0.48933 25 16 2 0 0 0 0.40476 1 43681 43681 4.3292 2.0265 1 1198500 + 76911 23896 51376 52481 89579 89579 -0.03485686859062298 YDELFAQLY 9 Unmodified _YDELFAQLY_ 0 0 0 REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF REV__ENST00000477066.5_1_20:36025122-36031779:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 581.276772 1160.53899 0.97881 0.00056896 2.0193 0.0011738 2.9981 0.0017427 581.277671650103 79.775 0.37551 79.285 79.053 79.428 -0.48933 0 0 NaN 4.3292 25 16 2 NaN NaN NaN NaN 0 NaN NaN 0 1198500 + 76912 23896 51376 52481 -0.03485686859062298 YDELRLFI 8 Unmodified _YDELRLFI_ 0 0 0 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 REV__nc|ENSG00000110080|Q11206-3|ST3GAL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 356.8630065917969 3 356.862325 1067.56515 1.5919 0.0005681 -0.12496 -4.4594E-05 1.467 0.0005235 356.8623025517075 19.145 0.28296 16.489 16.299 16.582 -2.6564 46 18 3 0 0 0 0.79669 1 10079 10079 6.2058 0 1 9722000 + 76913 18691 51377 52482 89580 89580 0.034066271030496864 YDEMTSGDSEL 11 Unmodified _YDEMTSGDSEL_ 0 0 0 REV__ENSG00000120458|ENST00000374979|MSANTD2 REV__ENSG00000120458|ENST00000374979|MSANTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 623.747314453125 2 623.742633 1245.47071 0.064278 4.0093E-05 1.8388 0.0011469 1.9031 0.001187 623.7447503125643 55.188 0.42971 55.188 54.876 55.305 0 44 18 4 0 0 0 0.67922 1 30566 30566 6.2058 1.4498 1 2019900 + 76914 19246 51378 52483 89581 89581 -0.1422034429190262 YDEQGGGEED 10 Unmodified _YDEQGGGEED_ 0 0 0 ENSG00000129910|ENST00000289746|CDH15 ENSG00000129910|ENST00000289746|CDH15 ENSG00000129910|ENST00000289746|CDH15 MSMS AL20221201_MKP_PDAC_01 4 366.8007507324219 3 366.800119 1097.37853 NaN NaN NaN NaN NaN NaN NaN 13.793 1 11.29 10.79 11.79 -2.5029 0 0 0 1.0061 1 6991 6991 0 0 1 76915 4165 51379 52484 89582 89582 -0.16626686313907157 YDEQQNFFA 9 Unmodified _YDEQQNFFA_ 0 0 0 ENSG00000166135|ENST00000299163|HIF1AN;ENST00000478787.1_1_10:102296230-102304880:+|nuORF ENSG00000166135|ENST00000299163|HIF1AN ENSG00000166135|ENST00000299163|HIF1AN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2476806640625 2 581.246003 1160.47745 0.35359 0.00020552 1.0532 0.00061219 1.4068 0.00081771 581.2465892407471 96.868 0.29593 96.563 96.414 96.71 -0.30472 50 18 3 0 0 0 0.5029 1 52854 52854 7.2892 0 1 1644100 76916 7434 51380 52485 89583 89583 -0.09636618558374721 YDEWDYGF 8 Unmodified _YDEWDYGF_ 0 0 0 GRIN2B|p.L289F|1|0.14|ENSG00000273079|chr12:13753462-13753462|G/A|missense_variant GRIN2B|p.L289F|1|0.14|ENSG00000273079|chr12:13753462-13753462|G/A|missense_variant GRIN2B|p.L289F|1|0.14|ENSG00000273079|chr12:13753462-13753462|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.705078125 2 547.708722 1093.40289 0.19416 0.00010634 -1.8884 -0.0010343 -1.6942 -0.00092794 547.704252944496 68.784 0.34441 68.303 68.141 68.485 -0.48071 34 15 3 0 0 0 0.80044 2 37578 37578;37626 6.3541 1.5981 1 1659400 76917 15904 51381 52486 89584;89585 89584 -0.14007381369765426 YDEYDEEEDD 10 Unmodified _YDEYDEEEDD_ 0 0 0 nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 nc|ENSG00000134532|P35711-3|SOX5 nc|ENSG00000134532|P35711-3|SOX5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 661.2147827148438 2 661.21496 1320.41537 NaN NaN NaN NaN NaN NaN NaN 38.38 1 38.38 37.88 38.88 0 0 0 0 1.0061 1 20497 20497 0 0 1 76918 4618 51382 52487 89586 89586 -0.2320247927868877 YDFNKEII 8 Unmodified _YDFNKEII_ 0 0 0 REV__nc|ENSG00000171204|Q8IUX1-3|TMEM126B REV__nc|ENSG00000171204|Q8IUX1-3|TMEM126B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2672729492188 2 521.266207 1040.51786 0.48799 0.00025437 -0.33826 -0.00017632 0.14973 7.8048E-05 521.2662286806836 82.678 0.43983 82.18 82.008 82.448 -0.49751 25 18 2 0 0 0 0.80044 1 45224 45224 6.3541 0 1 692310 + 76919 22540 51383 52488 89587 89587 -0.0007765216794268781 YDFNPWSP 8 Unmodified _YDFNPWSP_ 0 0 0 REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2222290039062 2 513.2218 1024.42905 0.57106 0.00029308 0.87398 0.00044854 1.445 0.00074163 513.2223711373744 57.514 0.18532 57.514 57.346 57.532 0 12 7 2 0 0 0 0.79783 1 32011 32011 7.9102 1.5561 1 1699200 + 76920 20340 51384 52489 89588 89588 -0.082190674076287 YDFNPWSP 8 Unmodified _YDFNPWSP_ 0 0 0 REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF REV__ENST00000560489.2_1_15:49658263-49658881:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2230834960938 2 513.2218 1024.42905 0.54018 0.00027723 1.1727 0.00060185 1.7129 0.00087908 513.2219924043709 74.148 0.77239 74.148 73.638 74.41 0 53 34 2 0 0 0 0.80143 1 41210 41210 5.7604 0 1 3133200 + 76921 20340 51384 52489 89589 89589 -0.082190674076287 YDFSINLII 9 Unmodified _YDFSINLII_ 0 0 0 ENST00000531381.1_1_11:121961336-121961384:-|nuORF ENST00000531381.1_1_11:121961336-121961384:-|nuORF ENST00000531381.1_1_11:121961336-121961384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2988891601562 2 549.297507 1096.58046 2.2975 0.001262 0.92134 0.00050609 3.2189 0.0017681 549.2981202216174 96.269 0.39706 96.262 96.019 96.416 -0.0070114 29 13 3 0 0 0 0.026094 1 53432 53432 57.471 21.427 1 7599400 76922 14904 51385 52490 89590 89590 0.03603493900254762 YDFSINLII 9 Unmodified _YDFSINLII_ 0 0 0 ENST00000531381.1_1_11:121961336-121961384:-|nuORF ENST00000531381.1_1_11:121961336-121961384:-|nuORF ENST00000531381.1_1_11:121961336-121961384:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.2994995117188 2 549.297507 1096.58046 2.4576 0.0013499 1.3458 0.00073924 3.8034 0.0020892 549.2983180902899 96.749 0.3952 96.742 96.505 96.9 -0.0070114 41 14 4 0 0 0 0.28047 1 53787 53787 18.135 1.1927 1 8427600 76923 14904 51385 52490 89591 89591 0.03603493900254762 YDGAYKVTK 9 Unmodified _YDGAYKVTK_ 0 0 0 ENST00000480626.5_1_3:58417333-58419536:-|nuORF ENST00000480626.5_1_3:58417333-58419536:-|nuORF ENST00000480626.5_1_3:58417333-58419536:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.772216796875 2 522.771657 1043.52876 0.33688 0.00017611 0.83103 0.00043444 1.1679 0.00061055 522.7720775603215 91.168 0.33346 90.673 90.51 90.843 -0.49457 32 14 3 0 0 0 0.51218 1 49789 49789 6.7232 1.4925 1 1134600 76924 14061 51386 52491 89592 89592 0.008737502063240754 YDGDGDDE 8 Unmodified _YDGDGDDE_ 0 0 0 REV__ENSG00000204859|ENST00000377674|ZBTB48 REV__ENSG00000204859|ENST00000377674|ZBTB48 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.14111328125 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 7.141 1 7.141 6.641 7.641 0 0 0 0 0.97444 1 3424 3424 0 0 1 + 76925 24203 51387 52492 89593 89593 -0.17957700951217248 YDGDGDDE 8 Unmodified _YDGDGDDE_ 0 0 0 REV__ENSG00000204859|ENST00000377674|ZBTB48 REV__ENSG00000204859|ENST00000377674|ZBTB48 MSMS AL20221201_MKP_PDAC_01 4 443.1414184570312 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 9.1639 1 6.6819 6.1819 7.1819 -2.482 0 0 0 0.97444 1 4622 4622 0 0 1 + 76926 24203 51387 52492 89594 89594 -0.17957700951217248 YDGEEKIKF 9 Unmodified _YDGEEKIKF_ 0 0 0 ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36 ENST00000475375.1_1_13:53010343-53024741:-|nuORF ENST00000475375.1_1_13:53010343-53024741:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2828369140625 2 564.782222 1127.54989 0.57858 0.00032677 0.26167 0.00014779 0.84026 0.00047456 564.7829342045699 93.057 0.36047 92.6 92.501 92.862 -0.45741 27 17 3 0 0 0 0.57331 1 50848 50848 2.3027 0 1 355580 76927 4786 51388 52493 89595 89595 -0.008782844847928573 YDGHEQTTY 9 Unmodified _YDGHEQTTY_ 0 0 0 REV__nc|ENSG00000228741|Q96N96|SPATA13 REV__nc|ENSG00000228741|Q96N96|SPATA13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2283935546875 2 557.22781 1112.44107 0.6491 0.0003617 -0.45065 -0.00025111 0.19846 0.00011058 557.2273998411467 99.634 0.21906 93.459 93.354 93.574 -6.1757 20 13 2 0 0 0 0.49272 1 66403 66403 7.9102 1.187 1 29066000 + 76928 23309 51389 52494 89596 89596 -0.11065495455090968 YDGKVMKL 8 Oxidation (M) _YDGKVM(Oxidation (M))KL_ YDGKVM(1)KL YDGKVM(69)KL 0 0 1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.2577514648438 2 485.257328 968.500103 -0.26149 -0.00012689 -0.21249 -0.00010311 -0.47397 -0.00023 485.25730384644265 25.463 0.31091 25.463 25.239 25.55 0 27 14 2 0 0 0 0.20424 1 12990 12990 69.105 25.247 1 2145100 76929 10191 51390 52495 89597 89597 1660 0.014593093055509598 YDGKVMKL 8 Oxidation (M) _YDGKVM(Oxidation (M))KL_ YDGKVM(1)KL YDGKVM(100)KL 0 0 1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2585754394531 2 485.257328 968.500103 0.64144 0.00031127 0.30654 0.00014875 0.94799 0.00046002 485.25743651506554 28.346 0.44434 25.198 24.935 25.38 -3.1482 45 23 2 0 0 0 0.087939 2 15836 15714;15836 103.75 39.512 1 7868900 76930 10191 51390 52495 89598;89599 89599 1660 0.014593093055509598 YDGKVMKL 8 Unmodified _YDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.2605590820312 2 477.259871 952.505189 1.0274 0.00049036 0.419 0.00019997 1.4464 0.00069033 477.2600339696336 40.756 0.54292 36.227 35.889 36.432 -4.5294 73 33 3 0 0 0 0.071044 2 24377 24243;24377 122.18 44.03 1 22224000 76931 10191 51390 52496 89600;89601 89601 0.027036131681597908 YDGPATPLYS 10 Unmodified _YDGPATPLYS_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2512817382812 2 542.253297 1082.49204 0.98673 0.00053506 -1.8798 -0.0010193 -0.89303 -0.00048425 542.2525906141458 37.878 0.23487 33.509 33.381 33.616 -4.3689 16 13 2 0 0 0 0.44373 1 22273 22273 19.257 0 1 6223200 + 76932 19619 51391 52497 89602 89602 -0.04590546410236129 YDHAPFTRHI 10 Unmodified _YDHAPFTRHI_ 0 0 0 REV__nc|ENSG00000152061|Q5R372-4|RABGAP1L REV__nc|ENSG00000152061|Q5R372-4|RABGAP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.5440063476562 3 419.543878 1255.60981 NaN NaN NaN NaN NaN NaN NaN 22.071 1 22.071 21.571 22.571 0 0 0 0 0.97302 1 11214 11214 1.7423 0 1 + 76933 21100 51392 52498 89603 89603 -0.0077754903088589344 YDHNGLAP 8 Unmodified _YDHNGLAP_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 886.4012451171875 1 886.405357 885.398081 0.080932 7.1738E-05 -4.43 -0.0039268 -4.3491 -0.003855 886.4020053765075 101.92 0.071365 101.92 101.91 101.98 0 9 7 2 0 0 0 0.80992 1 56222 56222 0.69038 0 1 329600 + 76934 22663 51393 52499 89604 89604 -0.049202207218627336 YDHSDIEQG 9 Unmodified _YDHSDIEQG_ 0 0 0 REV__ENST00000589004.5_1_17:74622410-74625315:-|nuORF REV__ENST00000589004.5_1_17:74622410-74625315:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2197875976562 2 532.219985 1062.42542 0.15902 8.4634E-05 -1.4246 -0.00075819 -1.2656 -0.00067355 532.2192637167728 65.34 0.84126 64.856 64.448 65.289 -0.48428 120 38 4 0 0 0 0.55775 1 35702 35702 3.9444 1.0552 1 8659900 + 76935 17473 51394 52500 89605 89605 -0.10329781972131968 YDHTLKEIA 9 Unmodified _YDHTLKEIA_ 0 0 0 REV__ENSG00000091436|ENST00000375213|MAP3K20 REV__ENSG00000091436|ENST00000375213|MAP3K20 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2824096679688 2 545.282389 1088.55022 NaN NaN NaN NaN NaN NaN NaN 93.851 1 93.851 93.351 94.351 0 0 0 0 0.8622 1 51883 51883 0 0 1 + 76936 17890 51395 52501 89606 89606 0.00949135235077847 YDILHDVSCA 10 Unmodified _YDILHDVSCA_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.1737365722656 3 379.174463 1134.50156 NaN NaN NaN NaN NaN NaN NaN 68.094 1 68.094 67.594 68.594 0 0 0 0 0.9731 1 37967 37967 3.5871 0.59182 1 76937 10061 51396 52502 89607 89607 -0.060311013963428195 YDIRGEEWKR 10 Unmodified _YDIRGEEWKR_ 0 0 0 REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 676.3406982421875 2 676.341301 1350.66805 0.30632 0.00020717 -2.8543 -0.0019304 -2.5479 -0.0017233 676.338266714275 49.346 0.29578 49.346 49.215 49.51 0 22 13 3 0 0 0 0.6966 1 27193 27193 3.2813 0.28607 1 3014500 + 76938 17301 51397 52503 89608 89608 0.00674087823699665 YDIRGEEWKR 10 Unmodified _YDIRGEEWKR_ 0 0 0 REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 676.341301 1350.66805 0.30632 0.00020717 -2.8543 -0.0019304 -2.5479 -0.0017233 676.338266714275 49.346 0.29578 49.346 49.215 49.51 0 0 0 NaN 3.2813 22 13 3 NaN NaN NaN NaN 0 NaN NaN 0 3014500 + 76939 17301 51397 52503 0.00674087823699665 YDIRQQEYF 9 Unmodified _YDIRQQEYF_ 0 0 0 REV__ENST00000448331.7_2_17:16704364-16705764:+|nuORF REV__ENST00000448331.7_2_17:16704364-16705764:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 421.2023315429688 3 421.199777 1260.5775 NaN NaN NaN NaN NaN NaN NaN 42.95 1 38.265 37.765 38.765 -4.6846 0 0 0 0.70001 1 26015 26015 6.1918 0 1 + 76940 27175 51398 52504 89609 89609 -0.042363812245639565 YDISHHEEY 9 Unmodified _YDISHHEEY_ 0 0 0 REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 398.1565856933594 3 398.168366 1191.48327 0.53589 0.00021338 -1.7437 -0.0006943 -1.2078 -0.00048092 398.16781109825433 84.349 0.24706 83.849 83.729 83.976 -0.49961 15 10 2 0 0 0 0.21767 1 46214 46214 2.9952 0 1 496550 + 76941 18794 51399 52505 89610 89610 -0.10481520046710102 YDIVFKHF 8 Unmodified _YDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.7789916992188 2 534.779285 1067.54402 0.98576 0.00052716 -0.45343 -0.00024249 0.53233 0.00028468 534.7789876133247 64.072 0.29362 64.061 63.9 64.194 -0.010536 25 14 2 0 0 0 0.36898 1 35037 35037 39.957 10.876 1 8691700 76942 16042 51400 52506 89611 89611 0.01294661794190688 YDIVFKHF 8 Unmodified _YDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7799072265625 2 534.779285 1067.54402 1.1709 0.00062616 -0.54819 -0.00029316 0.62269 0.000333 534.778789961307 86.614 0.44698 80.439 80.177 80.624 -6.1757 39 23 2 0 0 0 0.20424 2 57178 57048;57178 71.134 22.788 1 11692000 76943 16042 51400 52506 89612;89613 89613 0.01294661794190688 YDIVFKHF 8 Unmodified _YDIVFKHF_ 0 0 0 nc|ENSG00000067066|P23497|SP100;nc|ENSG00000067066|P23497-7|SP100;nc|ENSG00000067066|P23497-6|SP100;nc|ENSG00000067066|P23497-5|SP100;nc|ENSG00000067066|P23497-2|SP100;nc|ENSG00000067066|P23497-3|SP100;ENSG00000067066|ENST00000340126|SP100 nc|ENSG00000067066|P23497|SP100 nc|ENSG00000067066|P23497|SP100 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 534.779285 1067.54402 0.28375 0.00015174 1.4889 0.00079621 1.7726 0.00094795 534.7803297825144 80.192 0.16124 80.192 80.089 80.251 0 -0.12339 0.0018288 NaN 71.134 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 378330 76944 16042 51400 52506 0.01294661794190688 YDKEIIVI 8 Unmodified _YDKEIIVI_ 0 0 0 ENSG00000187889|ENST00000343433|FYB2 ENSG00000187889|ENST00000343433|FYB2 ENSG00000187889|ENST00000343433|FYB2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2665100097656 2 496.786776 991.558998 0.14222 7.0655E-05 3.6909 0.0018336 3.8331 0.0019042 496.79198777828134 66.309 0.297 65.826 65.728 66.025 -0.48323 27 15 3 0 0 0 8.7369 1 36285 36285 8.5933 0.68312 1 2616100 76945 9606 51401 52507 89614 89614 0.062881088715244 YDKGFKSKL 9 Unmodified _YDKGFKSKL_ 0 0 0 REV__ENSG00000154258|ENST00000340001|ABCA9;REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__ENSG00000154258|ENST00000340001|ABCA9 MSMS AL20221201_MKP_PDAC_01 4 362.538818359375 3 362.537842 1084.5917 NaN NaN NaN NaN NaN NaN NaN 24.857 1 21.974 21.474 22.474 -2.8831 0 0 0 0.67877 1 13560 13560 6.6304 0 1 + 76946 21218;20528 51402 52508 89615 89615 0.05278315994382865 YDKMERDYRVK 11 Unmodified _YDKMERDYRVK_ 0 0 0 REV__ENSG00000029993|ENST00000325307|HMGB3 REV__ENSG00000029993|ENST00000325307|HMGB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.9201965332031 3 501.585526 1501.73475 -0.7584 -0.0003804 0.38208 0.00019165 -0.37632 -0.00018875 501.58559405756824 19.743 0.45775 19.771 19.634 20.092 0.028357 44 25 3 0 0 0 0.74244 1 10078 10078 0.073264 0 1 660310 + 76947 17141 51403 52509 89616 89616 0.003949553232814651 YDKMVWYA 8 Unmodified _YDKMVWYA_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.25048828125 2 538.249503 1074.48445 0.37155 0.00019998 3.572 0.0019226 3.9436 0.0021226 538.2508121859378 45.024 0.22648 40.172 40.115 40.342 -4.852 23 14 2 0 0 0 0.61462 1 27615 27615 24.674 6.5275 1 61930000 + 76948 18337 51404 52510 89617 89617 -0.04980977211494064 YDKVETPTL 9 Unmodified _YDKVETPTL_ 0 0 0 REV__ENSG00000106588|ENST00000223321|PSMA2 REV__ENSG00000106588|ENST00000223321|PSMA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2763671875 2 533.276772 1064.53899 0.31264 0.00016673 -0.22473 -0.00011984 0.087914 4.6883E-05 533.2765340482334 96.662 0.38761 96.662 96.526 96.913 0 37 22 2 0 0 0 0.55144 1 53394 53394 4.3292 0 1 376220 + 76949 18517 51405 52511 89618 89618 0.009303131409069465 YDKWNRQF 8 Unmodified _YDKWNRQF_ 0 0 0 REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4 REV__nc|ENSG00000101280|Q9Y264-2|ANGPT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.2987060546875 2 578.780348 1155.54614 0.36267 0.00020991 -1.0785 -0.0006242 -0.7158 -0.00041429 578.779642734566 66.129 0.44969 66.129 65.898 66.348 0 79 21 5 0 0 0 0.80143 1 36802 36802 5.7604 1.0044 1 58825000 + 76950 18154 51406 52512 89619 89619 -0.025409094680071576 YDKYEGDIL 9 Unmodified _YDKYEGDIL_ 0 0 0 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 REV__nc|ENSG00000123243|Q86UX2-3|ITIH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.265869140625 2 558.266404 1114.51826 0.70931 0.00039598 -1.1795 -0.00065847 -0.47018 -0.00026249 558.265330878569 84.128 0.37736 83.628 83.441 83.819 -0.49961 38 16 3 0 0 0 0.48152 1 46007 46007 8.5933 0 1 1819400 + 76951 19379 51407 52513 89620 89620 -0.03442277238764291 YDLAEPLTKG 10 Unmodified _YDLAEPLTKG_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7903442382812 2 553.790047 1105.56554 NaN NaN NaN NaN NaN NaN NaN 94.259 1 94.259 93.759 94.759 0 0 0 0 0.99388 1 52104 52104 1.3295 0.63916 1 + 76952 19862 51408 52514 89621 89621 0.016980020322080236 YDLCDDEQTL 10 Unmodified _YDLCDDEQTL_ 0 0 0 ENST00000526183.5_1_8:145724106-145726142:+|nuORF;ENST00000526564.1_1_8:145724415-145725789:+|nuORF;ENST00000532806.1_1_8:145722766-145725943:+|nuORF;ENSG00000160972|ENST00000435887|PPP1R16A ENST00000526183.5_1_8:145724106-145726142:+|nuORF ENST00000526183.5_1_8:145724106-145726142:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.8369140625 2 607.747718 1213.48088 NaN NaN NaN NaN NaN NaN NaN 76.257 1 76.257 75.757 76.757 0 0 0 0 0.99091 1 42404 42404 1.6526 0 1 76953 14813 51409 52515 89622 89622 -0.11731736566662221 YDLFVGVRG 9 Unmodified _YDLFVGVRG_ 0 0 0 REV__ENSG00000189253|ENST00000329862|TRIM64B REV__ENSG00000189253|ENST00000329862|TRIM64B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2739868164062 2 513.274367 1024.53418 NaN NaN NaN NaN NaN NaN NaN 53.802 1 53.337 52.837 53.837 -0.46568 0 0 0 0.50124 1 29121 29121 15.847 0.078963 1 + 76954 23772 51410 52516 89623 89623 0.022894737888236705 YDLGQESETY 10 Unmodified _YDLGQESETY_ 0 0 0 REV__ENSG00000130023|ENST00000366773|ERMARD REV__ENSG00000130023|ENST00000366773|ERMARD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7542114257812 2 602.753858 1203.49316 -0.29123 -0.00017554 -0.3709 -0.00022356 -0.66213 -0.0003991 602.7539451643192 48.987 0.18887 48.987 48.874 49.062 0 20 9 3 0 0 0 0.66569 1 26903 26903 6.7232 1.4925 1 4131800 + 76955 19691 51411 52517 89624 89624 -0.10044376831979207 YDLKKERSF 9 Unmodified _YDLKKERSF_ 0 0 0 REV__ENSG00000007001|ENST00000005756|UPP2 REV__ENSG00000007001|ENST00000005756|UPP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.317138671875 2 593.316763 1184.61897 1.3265 0.00078704 -1.1334 -0.00067249 0.19308 0.00011456 593.3161920978974 47.572 0.34977 42.338 42.165 42.515 -5.2339 50 20 3 0 0 0 0.023481 1 29473 29473 60.074 12.48 1 23512000 + 76956 17000 51412 52518 89625 89625 0.034047995347464166 YDLLCGTVSI 10 Unmodified _YDLLCGTVSI_ 0 0 0 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 REV__nc|ENSG00000084628|Q4KMZ8-3|NKAIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.274169921875 2 542.273175 1082.5318 0.22447 0.00012172 0.70801 0.00038394 0.93248 0.00050566 542.2735554183953 92.348 0.31969 92.348 92.163 92.482 0 54 24 3 0 0 0 0.63399 1 51103 51103 9.3831 0 1 2764500 + 76957 17735 51413 52519 89626 89626 -0.006167427311766005 YDLLVEMVK 9 Unmodified _YDLLVEMVK_ 0 0 0 nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;ENST00000484179.5_1_2:61493011-61508284:-|nuORF nc|ENSG00000115464|Q70CQ2-3|USP34 nc|ENSG00000115464|Q70CQ2-3|USP34 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.23974609375 2 555.299193 1108.58383 0.60217 0.00033439 4.1445 0.0023014 4.7467 0.0026358 555.3011068711343 48.517 0.1419 48.145 48.039 48.181 -0.37172 10 6 2 0 0 0 0.19496 1 26024 26024 13.906 0 1 1780500 76958 3126 51414 52520 89627 89627 0.03388420682586002 YDLPTNRENYI 11 Unmodified _YDLPTNRENYI_ 0 0 0 ENSG00000161960|ENST00000293831|EIF4A1;nc|ENSG00000156976|Q14240-2|EIF4A2;ENSG00000156976|ENST00000323963|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000485101.5_1_3:186505555-186505672:+|nuORF;ENST00000494445.1_1_3:186505247-186506105:+|nuORF;ENST00000421800.1_1_13:29173910-29174120:+|nuORF;ENST00000461021.1_1_3:186505247-186505672:+|nuORF;ENST00000576035.1_1_17:2489687-2489864:-|nuORF ENSG00000161960|ENST00000293831|EIF4A1;ENST00000576035.1_1_17:2489687-2489864:-|nuORF ENSG00000161960|ENST00000293831|EIF4A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.33984375 2 699.338424 1396.66229 0.37714 0.00026375 0.78076 0.00054601 1.1579 0.00080976 699.33884417947 53.567 0.28019 53.115 52.943 53.223 -0.45173 42 13 4 0 0 0 0.71341 1 28937 28937 2.9952 0 1 11410000 76959 6822;15519 51415 52521 89628 89628 -0.020170554785863715 YDLRERKLA 9 Unmodified _YDLRERKLA_ 0 0 0 ENSG00000185875|ENST00000376356|THNSL1 ENSG00000185875|ENST00000376356|THNSL1 ENSG00000185875|ENST00000376356|THNSL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.5567626953125 3 388.555895 1162.64586 0.22639 8.7965E-05 1.0017 0.00038923 1.2281 0.0004772 388.5561470798007 40.864 0.10091 40.862 40.83 40.931 -0.0017929 6 4 2 0 0 0 0.52067 1 21824 21824 3.8763 0 1 1102900 76960 9422 51416 52522 89629 89629 0.071039081459503 YDLRRWEKWEL 11 Unmodified _YDLRRWEKWEL_ 0 0 0 ENSG00000115718|ENST00000234071|PROC;nc|ENSG00000115718|P04070-2|PROC ENSG00000115718|ENST00000234071|PROC ENSG00000115718|ENST00000234071|PROC MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2791748046875 3 531.94393 1592.80996 1.0858 0.00057756 -1.8181 -0.00096714 -0.73237 -0.00038958 532.2776656444571 93.999 0.25832 87.823 87.718 87.976 -6.1757 23 14 3 0 0 0 0.73992 1 62243 62243 0.50596 0 1 9043800 76961 3155 51417 52523 89630 89630 0.03726880846011227 YDLSQLAFL 9 Unmodified _YDLSQLAFL_ 0 0 0 REV__ENSG00000112852|ENST00000194155|PCDHB2 REV__ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2816162109375 2 535.281857 1068.54916 0.80509 0.00043095 -0.23235 -0.00012437 0.57274 0.00030658 535.281530831487 92.385 0.86919 86.21 85.757 86.626 -6.1757 125 52 3 0 0 0 0.25681 1 61270 61270 19.257 2.3147 1 54979000 + 76962 18840 51418 52524 89631 89631 0.017629208661446683 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.160400390625 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 1.8955 1 1.8955 1.3955 2.3955 0 0 0 0 0.97444 1 924 924 0 0 1 76963 3192 51419 52525 89632 89632 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.16015625 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 2.8905 1 2.8905 2.3905 3.3905 0 0 0 0 0.97444 1 1399 1399 0 0 1 76964 3192 51419 52525 89633 89633 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.1602172851562 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 3.0772 1 3.0772 2.5772 3.5772 0 0 0 0 0.97444 1 1492 1492 0 0 1 76965 3192 51419 52525 89634 89634 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.1595458984375 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 12.855 1 12.855 12.355 13.355 0 0 0 0 0.97444 1 6084 6084 0 0 1 76966 3192 51419 52525 89635 89635 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.159423828125 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 13.426 1 13.426 12.926 13.926 0 0 0 0 0.97444 1 6352 6352 0 0 1 76967 3192 51419 52525 89636 89636 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.1588134765625 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 14.014 1 14.014 13.514 14.514 0 0 0 0 0.97444 1 6638 6638 0 0 1 76968 3192 51419 52525 89637 89637 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.1962890625 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 17.649 1 17.649 17.149 18.149 0 0 0 0 0.97444 1 8714 8714 0 0 1 76969 3192 51419 52525 89638 89638 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.8106689453125 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 94.811 1 94.811 94.311 95.311 0 0 0 0 0.97444 1 52409 52409 0 0 1 76970 3192 51419 52525 89639 89639 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1602172851562 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 1.1796 1 1.1063 0.60629 1.6063 -0.07329 0 0 0 0.97444 1 592 592 0 0 1 76971 3192 51419 52525 89640 89640 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.16015625 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 3.462 1 3.3899 2.8899 3.8899 -0.072029 0 0 0 0.97444 1 1704 1704 0 0 1 76972 3192 51419 52525 89641 89641 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1593627929688 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 3.8512 1 3.7792 3.2792 4.2792 -0.072029 0 0 0 0.97444 1 1901 1901 0 0 1 76973 3192 51419 52525 89642 89642 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1599731445312 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 9.7527 1 9.663 9.163 10.163 -0.08967 0 0 0 0.97444 1 4767 4767 0 0 1 76974 3192 51419 52525 89643 89643 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1598510742188 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 10.422 1 10.333 9.8328 10.833 -0.08967 0 0 0 0.97444 1 5083 5083 0 0 1 76975 3192 51419 52525 89644 89644 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.159423828125 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 11.948 1 11.883 11.383 12.383 -0.064889 0 0 0 0.97444 1 5807 5807 0 0 1 76976 3192 51419 52525 89645 89645 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1598510742188 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 15.119 1 15.105 14.605 15.605 -0.014067 0 0 0 0.97444 1 7402 7402 0 0 1 76977 3192 51419 52525 89646 89646 -0.20963274352425287 YDMDDDEM 8 Unmodified _YDMDDDEM_ 0 0 0 nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B nc|ENSG00000116117|Q8TEW8-6|PARD3B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.1599731445312 2 517.15989 1032.30523 NaN NaN NaN NaN NaN NaN NaN 15.964 1 15.95 15.45 16.45 -0.014067 0 0 0 0.97444 1 7857 7857 0 0 1 76978 3192 51419 52525 89647 89647 -0.20963274352425287 YDMDPTVEPMF 11 Unmodified _YDMDPTVEPMF_ 0 0 0 REV__nc|ENSG00000116690|Q92954-5|PRG4 REV__nc|ENSG00000116690|Q92954-5|PRG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 448.853759765625 3 448.854402 1343.54138 -0.63021 -0.00028287 -0.93889 -0.00042142 -1.5691 -0.00070429 448.85381700899484 15.022 0.068027 15.008 14.979 15.047 -0.014067 26 19 2 0 0 0 0.74157 1 7345 7345 0.094841 0 1 439120 + 76979 19058 51420 52526 89648 89648 -0.1166534250796758 YDMKSYLCYK 10 Carbamidomethyl (C) _YDMKSYLC(Carbamidomethyl (C))YK_ YDMKSYLC(1)YK YDMKSYLC(63)YK 0 1 0 ENST00000370986.8_1_1:68153878-68153992:+|nuORF ENST00000370986.8_1_1:68153878-68153992:+|nuORF ENST00000370986.8_1_1:68153878-68153992:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.8108520507812 2 685.809599 1369.60464 0.18839 0.0001292 1.1835 0.00081168 1.3719 0.00094088 685.8110570905881 25.048 0.57626 22.165 21.888 22.464 -2.8831 267 49 7 0 0 0 0.041224 1 13558 13558 62.573 24.397 1 501780000 76980 12350 51421 52527 89649 89649 977 -0.06537357000070187 YDMPLDEDE 9 Unmodified _YDMPLDEDE_ 0 0 0 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 ENSG00000169618|ENST00000303786|PROKR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7160034179688 2 563.715887 1125.41722 NaN NaN NaN NaN NaN NaN NaN 0.55096 1 0.47704 -0.022962 0.97704 -0.07392 0 0 0 0.8622 1 275 275 0 0 1 76981 7892 51422 52528 89650 89650 -0.14047097003776798 YDNIGILGNF 10 Unmodified _YDNIGILGNF_ 0 0 0 ENSG00000111639|ENST00000229238|MRPL51 ENSG00000111639|ENST00000229238|MRPL51 ENSG00000111639|ENST00000229238|MRPL51 MSMS AL20221201_MKP_PDAC_01 4 562.802490234375 2 563.282389 1124.55022 NaN NaN NaN NaN NaN NaN NaN 101.88 1 95.702 95.202 96.202 -6.1757 0 0 0 0.88176 1 68383 68383 8.7454 0 1 76982 2800 51423 52529 89651 89651 -0.007068647649475679 YDNILNFIF 9 Unmodified _YDNILNFIF_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2977905273438 2 579.795132 1157.57571 1.3037 0.00075587 0.8389 0.00048639 2.1426 0.0012423 579.7963766854434 65.914 0.49389 65.924 65.747 66.241 0.0095596 77 24 5 0 0 0 0.41742 2 36102 36102;36211 11.64 0.81637 1 41974000 + 76983 20877 51424 52530 89652;89653 89652 0.0032260975747249176 YDNILNFIF 9 Unmodified _YDNILNFIF_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2977905273438 2 579.795132 1157.57571 1.3037 0.00075587 0.8389 0.00048639 2.1426 0.0012423 579.7963766854434 65.914 0.49389 65.924 65.747 66.241 0.0095596 77 24 5 0 0 0 0.19891 1 36102 36102 11.64 0.81637 1 41974000 + 76984 20877 51424 52530 89654 89654 0.0032260975747249176 YDNMEDMDQMD 11 Unmodified _YDNMEDMDQMD_ 0 0 0 REV__ENSG00000110200|ENST00000227618|ANAPC15 REV__ENSG00000110200|ENST00000227618|ANAPC15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.534912109375 3 469.489682 1405.44722 0.68135 0.00031989 0.25539 0.0001199 0.93674 0.00043979 469.48993350069816 53.475 0.31767 53.475 53.327 53.645 0 46 14 4 0 0 0 0.30605 1 29725 29725 0 0 1 9378500 + 76985 18696 51425 52531 89655 89655 -0.2392884939238229 YDPDVSDHLF 10 Unmodified _YDPDVSDHLF_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2696533203125 2 604.266936 1206.51932 0.27934 0.0001688 1.7318 0.0010465 2.0111 0.0012153 604.2681041440025 59.107 0.35955 58.616 58.369 58.729 -0.49079 23 16 2 0 0 0 0.52888 1 32136 32136 14.838 4.7643 1 2155700 76986 385 51426 52532 89656 89656 -0.07568062869859205 YDPLFDGY 8 Unmodified _YDPLFDGY_ 0 0 0 REV__nc|ENSG00000214198|Q6P2S7|TTC41P REV__nc|ENSG00000214198|Q6P2S7|TTC41P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2164916992188 2 495.216183 988.417813 0.4705 0.000233 -0.76802 -0.00038034 -0.29752 -0.00014734 495.2158132508292 57.613 0.40202 57.613 57.443 57.845 0 43 19 3 0 0 0 0.74163 1 32144 32144 13.508 0 1 14677000 + 76987 29937 51427 52533 89657 89657 -0.07685889501760812 YDPRFSENL 9 Unmodified _YDPRFSENL_ 0 0 0 REV__ENSG00000179632|ENST00000322428|MAF1 REV__ENSG00000179632|ENST00000322428|MAF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7702026367188 2 570.769645 1139.52474 NaN NaN NaN NaN NaN NaN NaN 48.71 1 48.339 47.839 48.839 -0.37172 0 0 0 0.16996 1 26151 26151 34.402 3.7652 1 + 76988 23109 51428 52534 89658 89658 -0.039443392873636185 YDPYPYETY 9 Unmodified _YDPYPYETY_ 0 0 0 ENSG00000122176|ENST00000354955|FMOD ENSG00000122176|ENST00000354955|FMOD ENSG00000122176|ENST00000354955|FMOD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.7490234375 2 605.750587 1209.48662 NaN NaN NaN NaN NaN NaN NaN 26.977 1 26.977 26.477 27.477 0 0 0 0 0.84737 1 13886 13886 1.8442 0 1 76989 3626 51429 52535 89659 89659 -0.10974269992698282 YDRDRSGSISY 11 Unmodified _YDRDRSGSISY_ 0 0 0 ENST00000461006.5_1_1:32096163-32098865:-|nuORF;ENSG00000162517|ENST00000373703|PEF1 ENST00000461006.5_1_1:32096163-32098865:-|nuORF ENST00000461006.5_1_1:32096163-32098865:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 659.8055419921875 2 659.804748 1317.59494 0.36811 0.00024288 0.053681 3.5419E-05 0.42179 0.0002783 659.8054145139498 99.411 0.14742 99.253 99.18 99.328 -0.1575 6 4 2 0 0 0 0.30605 1 54299 54299 0 0 1 1175800 76990 6868 51430 52536 89660 89660 -0.05115085689544685 YDRKWRRKRRW 11 Unmodified _YDRKWRRKRRW_ 0 0 0 ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 853.4821166992188 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 19.535 1 19.543 19.043 20.043 0.0078487 0 0 0 0.9435 1 9940 9940 0 0 1 76991 15188 51431 52537 89661 89661 0.13066406556367838 YDRKWRRKRRW 11 Unmodified _YDRKWRRKRRW_ 0 0 0 ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 853.4819946289062 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 29.466 1 26.164 25.664 26.664 -3.3016 0 0 0 0.9435 1 16555 16555 0 0 1 76992 15188 51431 52537 89662 89662 0.13066406556367838 YDRKWRRKRRW 11 Unmodified _YDRKWRRKRRW_ 0 0 0 ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF ENST00000553345.5_1_20:31020694-31021097:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 853.3438110351562 2 853.484748 1704.95494 NaN NaN NaN NaN NaN NaN NaN 59.366 1 53.251 52.751 53.751 -6.1147 0 0 0 0.9435 1 38110 38110 0 0 1 76993 15188 51431 52537 89663 89663 0.13066406556367838 YDRLRRPGCR 10 Unmodified _YDRLRRPGCR_ 0 0 0 ENSG00000187678|ENST00000434127|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 ENSG00000187678|ENST00000434127|SPRY4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.3411865234375 2 646.343655 1290.67276 NaN NaN NaN NaN NaN NaN NaN 18.146 1 18.146 17.646 18.646 0 0 0 0 0.99388 1 9000 9000 1.3295 0.80477 1 76994 9578 51432 52538 89664 89664 0.039046934854923165 YDRLYEKR 8 Unmodified _YDRLYEKR_ 0 0 0 REV__nc|ENSG00000172264|A1Z1Q3|MACROD2 REV__nc|ENSG00000172264|A1Z1Q3|MACROD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7762451171875 2 571.80128 1141.58801 0.65164 0.00037261 -0.48195 -0.00027558 0.16968 9.7025E-05 571.8008939022027 85.878 0.3652 85.377 85.207 85.572 -0.5015 43 14 4 0 0 0 8.7369 1 47093 47093 0.79363 0.19213 1 1708500 + 76995 22637 51433 52539 89665 89665 0.022876462205204007 YDRRIQSYMA 10 Unmodified _YDRRIQSYMA_ 0 0 0 ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8821411132812 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 68.955 1 68.955 68.455 69.455 0 0 0 0 1.0029 1 38426 38426 0.12286 0 1 76996 13754 51434 52540 89666 89666 -0.020089434567353237 YDRRIQSYMA 10 Unmodified _YDRRIQSYMA_ 0 0 0 ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8820495605469 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 38.945 1 38.658 38.158 39.158 -0.28687 0 0 0 0.95103 1 20525 20525 3.0723 0 1 76997 13754 51434 52540 89667 89667 -0.020089434567353237 YDRRIQSYMA 10 Unmodified _YDRRIQSYMA_ 0 0 0 ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8823547363281 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 75.849 1 75.372 74.872 75.872 -0.47714 0 0 0 1.0029 1 41523 41523 0.12286 0 1 76998 13754 51434 52540 89668 89668 -0.020089434567353237 YDRRIQSYMA 10 Unmodified _YDRRIQSYMA_ 0 0 0 ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF ENST00000466374.1_1_22:38453534-38463917:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8820190429688 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 104.88 1 104.79 104.29 105.29 -0.091774 0 0 0 1.0029 1 57096 57096 0.12286 0 1 76999 13754 51434 52540 89669 89669 -0.020089434567353237 YDRRSPRGR 9 Unmodified _YDRRSPRGR_ 0 0 0 ENST00000576416.5_1_16:3185266-3185389:+|nuORF;ENST00000574928.5_1_16:3185143-3187740:+|nuORF ENST00000576416.5_1_16:3185266-3185389:+|nuORF ENST00000576416.5_1_16:3185266-3185389:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2123413085938 3 388.211122 1161.61154 -0.54267 -0.00021067 1.866 0.00072442 1.3234 0.00051375 388.21262261037936 18.618 0.080875 18.641 18.594 18.675 0.023106 22 10 3 0 0 0 0.61381 1 9347 9347 0.23584 0 1 287220 77000 15512 51435 52541 89670 89670 0.037195047777231593 YDRRYTTEKYW 11 Unmodified _YDRRYTTEKYW_ 0 0 0 REV__nc|ENSG00000173728|Q5SVJ3-2|SPMIP3 REV__nc|ENSG00000173728|Q5SVJ3-2|SPMIP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.9431762695312 4 395.942762 1579.74194 1.0024 0.00039688 0.15877 6.2864E-05 1.1611 0.00045974 395.9428125537923 42.93 0.57512 38.245 37.982 38.557 -4.6846 151 37 5 0 0 0 0.73992 1 25846 25846 0.50596 0 1 215790000 + 77001 22746 51436 52542 89671 89671 -0.02473988804649707 YDRVDRPY 8 Unmodified _YDRVDRPY_ 0 0 0 REV__ENSG00000110169|ENST00000265983|HPX;REV__CON__Q3SZV7 REV__CON__Q3SZV7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2640991210938 2 542.26453 1082.51451 1.084 0.0005878 -0.4062 -0.00022027 0.67778 0.00036753 542.2645497914843 37.626 0.2522 33.257 33.185 33.437 -4.3689 21 14 2 0 0 0 0.57045 1 22105 22105 28.487 6.7402 1 10220000 + + 77002 18694;16877 51437 52543 89672 89672 -0.02344902221943812 YDRYLAICY 9 Unmodified _YDRYLAICY_ 0 0 0 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 ENSG00000204694|ENST00000377149|OR11A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2775268554688 2 590.278792 1178.54303 NaN NaN NaN NaN NaN NaN NaN 30.364 1 30.364 29.864 30.864 0 0 0 0 0.84369 1 15773 15773 2.3027 0.65011 1 77003 10319 51438 52544 89673 89673 -0.0390992063705653 YDSAMSIMTE 10 Unmodified _YDSAMSIMTE_ 0 0 0 ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN ENSG00000165917|ENST00000298854|RAPSN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.23583984375 2 574.235932 1146.45731 0.60234 0.00034588 -0.52551 -0.00030177 0.076831 4.4119E-05 574.23572473048 49.189 0.27095 49.189 49.062 49.333 0 38 12 4 0 0 0 0.60623 1 27038 27038 10.824 0 1 11179000 77004 7407 51439 52545 89674 89674 -0.11005873604858607 YDSDNGDRGT 10 Unmodified _YDSDNGDRGT_ 0 0 0 ENST00000566973.1_1_16:89439341-89439509:-|nuORF ENST00000566973.1_1_16:89439341-89439509:-|nuORF ENST00000566973.1_1_16:89439341-89439509:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2161865234375 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 8.399 1 8.399 7.899 8.899 0 0 0 0 1.0061 1 4006 4006 0 0 1 77005 15429 51440 52546 89675 89675 -0.12387871465830358 YDSDNGDRGT 10 Unmodified _YDSDNGDRGT_ 0 0 0 ENST00000566973.1_1_16:89439341-89439509:-|nuORF ENST00000566973.1_1_16:89439341-89439509:-|nuORF ENST00000566973.1_1_16:89439341-89439509:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2174682617188 2 550.217974 1098.4214 NaN NaN NaN NaN NaN NaN NaN 10.818 1 10.738 10.238 11.238 -0.07938 0 0 0 1.0061 1 5268 5268 0 0 1 77006 15429 51440 52546 89676 89676 -0.12387871465830358 YDSGQSHMVAL 11 Unmodified _YDSGQSHMVAL_ 0 0 0 REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF REV__ENST00000547632.1_1_12:52309584-52313004:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.1847839355469 3 403.185251 1206.53392 0.40153 0.00016189 0.21652 8.7297E-05 0.61805 0.00024919 403.18515009900835 38.8 0.22056 38.8 38.66 38.88 0 14 9 2 0 0 0 0.72952 1 20774 20774 0.50596 0 1 1483100 + 77007 20414 51441 52547 89677 89677 -0.06108313993354386 YDSIYLDNL 9 Unmodified _YDSIYLDNL_ 0 0 0 REV__nc|ENSG00000144736|Q6PI26-2|SHQ1 REV__nc|ENSG00000144736|Q6PI26-2|SHQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.265380859375 2 558.266404 1114.51826 0.70931 0.00039598 -1.1795 -0.00065847 -0.47018 -0.00026249 558.265330878569 84.128 0.37736 83.628 83.441 83.819 -0.49961 38 16 3 0 0 0 0.58466 1 46104 46104 2.3027 0 1 1819400 + 77008 20731 51442 52548 89678 89678 -0.03442277238764291 YDSKPIVDL 9 Unmodified _YDSKPIVDL_ 0 0 0 ENST00000582227.5_1_17:31258522-31261369:+|nuORF;ENST00000583120.1_1_17:31258522-31263466:+|nuORF;ENSG00000006042|ENST00000579849|TMEM98 ENST00000582227.5_1_17:31258522-31261369:+|nuORF ENST00000582227.5_1_17:31258522-31261369:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.28076171875 2 525.279315 1048.54408 0.61724 0.00032422 -0.77279 -0.00040593 -0.15555 -8.1707E-05 525.279409993758 67.98 0.4222 67.98 67.743 68.165 0 48 20 3 0 0 0 0.54444 1 37979 37979 4.756 0 1 2332500 77009 323 51443 52549 89679 89679 0.02174617003538515 YDSNQIYI 8 Unmodified _YDSNQIYI_ 0 0 0 REV__ENST00000480964.5_1_7:44801441-44805210:+|nuORF REV__ENST00000480964.5_1_7:44801441-44805210:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.242431640625 2 508.24019 1014.46583 NaN NaN NaN NaN NaN NaN NaN 73.725 1 73.725 73.225 74.225 0 0 0 0 0.97444 1 41042 41042 2.3027 0.4585 1 + 77010 19347 51444 52550 89680 89680 -0.0408281558170529 YDSRKDVHI 9 Unmodified _YDSRKDVHI_ 0 0 0 REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2 REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.1952209472656 3 378.196367 1131.56727 0.25727 9.73E-05 -3.1158 -0.0011784 -2.8586 -0.0010811 378.19526349739743 25.527 0.11086 25.51 25.422 25.533 -0.017006 13 9 2 0 0 0 0.10734 1 13085 13085 23.79 0 1 26239000 + 77011 17088 51445 52551 89681 89681 0.006750558408612051 YDSTRIKTEEE 11 Unmodified _YDSTRIKTEEE_ 0 0 0 nc|ENSG00000109184|Q92564-2|DCUN1D4;ENSG00000109184|ENST00000334635|DCUN1D4;nc|ENSG00000109184|Q92564-3|DCUN1D4;ENST00000511675.5_1_4:52709342-52744085:+|nuORF nc|ENSG00000109184|Q92564-2|DCUN1D4 nc|ENSG00000109184|Q92564-2|DCUN1D4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 685.8242797851562 2 685.825346 1369.63614 NaN NaN NaN NaN NaN NaN NaN 92.898 1 92.898 92.398 93.398 0 0 0 0 0.9435 1 51365 51365 0 0 1 77012 2639 51446 52552 89682 89682 -0.03389369440719747 YDTDPSLGTF 10 Unmodified _YDTDPSLGTF_ 0 0 0 REV__nc|ENSG00000111799|Q99715-4|COL12A1 REV__nc|ENSG00000111799|Q99715-4|COL12A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2505493164062 2 558.248212 1114.48187 0.41306 0.00023059 1.363 0.00076091 1.7761 0.0009915 558.2496215168196 76.453 0.32172 76.453 76.315 76.637 0 22 12 3 0 0 0 0.69064 1 42489 42489 3.9444 1.3669 1 588770 + 77013 18769 51447 52553 89683 89683 -0.07079154135453791 YDTRKGEKGF 10 Unmodified _YDTRKGEKGF_ 0 0 0 REV__ENSG00000146143|ENST00000615550|PRIM2 REV__ENSG00000146143|ENST00000615550|PRIM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.8038330078125 2 600.80402 1199.59349 0.22178 0.00013325 -2.7536 -0.0016544 -2.5318 -0.0015211 600.8023346675243 78.829 0.55193 78.343 78.111 78.663 -0.48596 75 22 4 0 0 0 0.69064 1 43332 43332 3.9444 1.6417 1 16905000 + 77014 20813 51448 52554 89684 89684 0.00167325012330366 YDTSYFAIYV 10 Unmodified _YDTSYFAIYV_ 0 0 0 REV__ENSG00000182575|ENST00000328741|NXPH3 REV__ENSG00000182575|ENST00000328741|NXPH3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2901000976562 2 621.289879 1240.56521 0.59326 0.00036858 -0.41393 -0.00025717 0.17932 0.00011141 621.2897693695235 49.936 0.19753 49.936 49.812 50.009 0 14 8 2 0 0 0 0.69064 1 27525 27525 3.9444 0 1 1962100 + 77015 23279 51449 52555 89685 89685 -0.04545417687609188 YDTVFKHF 8 Unmodified _YDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7611083984375 2 528.761092 1055.50763 0.26418 0.00013969 0.22618 0.00011959 0.49036 0.00025928 528.7616260476024 48.62 0.21136 48.248 48.123 48.335 -0.37172 18 11 2 0 0 0 0.18875 1 26076 26076 74.423 44.198 1 7944300 77016 9370 51450 52556 89686 89686 -0.017902151025282365 YDTVFKHF 8 Unmodified _YDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.7616577148438 2 528.761092 1055.50763 0.36179 0.0001913 -0.40589 -0.00021462 -0.044096 -2.3316E-05 528.7609510206805 48.316 0.33649 48.277 48.083 48.42 -0.038643 42 16 3 0 0 0 0.18875 2 26003 26003;26105 74.423 44.198 1 51141000 77017 9370 51450 52556 89687;89688 89687 -0.017902151025282365 YDTVFKHF 8 Unmodified _YDTVFKHF_ 0 0 0 nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L nc|ENSG00000185404|Q9H930-1|SP140L nc|ENSG00000185404|Q9H930-1|SP140L MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7608642578125 2 528.761092 1055.50763 1.1585 0.00061259 0.29174 0.00015426 1.4503 0.00076685 528.7610135516035 53.576 0.55449 47.772 47.59 48.144 -5.8042 83 35 3 0 0 0 0.23628 1 33888 33888 64.236 32.119 1 98004000 77018 9370 51450 52556 89689 89689 -0.017902151025282365 YDTVKLVFR 9 Unmodified _YDTVKLVFR_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8854064941406 3 380.885241 1139.63389 0.80103 0.0003051 -0.17619 -6.7109E-05 0.62484 0.00023799 380.885000512215 49.732 0.21288 49.339 49.218 49.431 -0.3923 25 10 3 0 0 0 0.34999 1 26761 26761 10.151 3.5202 1 3400000 + 77019 18201 51451 52557 89690 89690 0.06966291402750358 YDTVKLVFR 9 Unmodified _YDTVKLVFR_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.885009765625 3 380.885241 1139.63389 0.61527 0.00023435 -0.50139 -0.00019097 0.11389 4.3377E-05 380.8851471634866 49.393 0.38339 49.349 49.134 49.517 -0.04369 49 18 4 0 0 0 0.2143 1 26654 26654 15.248 10.351 1 16486000 + 77020 18201 51451 52557 89691 89691 0.06966291402750358 YDTVKLVFR 9 Unmodified _YDTVKLVFR_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 380.885241 1139.63389 0.80103 0.0003051 -0.17619 -6.7109E-05 0.62484 0.00023799 380.885000512215 49.732 0.21288 49.339 49.218 49.431 -0.3923 -0.0047616 0.00019457 NaN 15.248 25 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3400000 + 77021 18201 51451 52557 0.06966291402750358 YDTVKLVFR 9 Unmodified _YDTVKLVFR_ 0 0 0 REV__ENSG00000101890|ENST00000218006|GUCY2F REV__ENSG00000101890|ENST00000218006|GUCY2F MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 380.885241 1139.63389 0.61527 0.00023435 -0.50139 -0.00019097 0.11389 4.3377E-05 380.8851471634866 49.393 0.38339 49.349 49.134 49.517 -0.04369 0.0047616 -0.00017702 NaN 15.248 49 18 4 NaN NaN NaN NaN 0 NaN NaN 0 16486000 + 77022 18201 51451 52557 0.06966291402750358 YDVIFRPDL 9 Unmodified _YDVIFRPDL_ 0 0 0 REV__ENSG00000172478|ENST00000388934|MAB21L4 REV__ENSG00000172478|ENST00000388934|MAB21L4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.765869140625 2 569.300581 1136.58661 0.32147 0.00018301 0.22465 0.00012789 0.54612 0.0003109 569.3002099469574 66.39 0.36604 65.907 65.744 66.11 -0.48324 44 18 3 0 0 0 0.54444 1 36268 36268 4.756 0.42677 1 6086200 + 77023 22653 51452 52558 89692 89692 0.02378012131748619 YDVKSESY 8 Unmodified _YDVKSESY_ 0 0 0 REV__ENST00000471759.5_1_1:76252774-76252855:+|nuORF REV__ENST00000471759.5_1_1:76252774-76252855:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 992.446044921875 1 990.441468 989.434192 0.38423 0.00038056 0.0026255 2.6004E-06 0.38686 0.00038316 990.4412784273294 57.264 0.28421 57.264 57.135 57.419 0 25 12 3 0 0 0 0.80975 1 31894 31894 0.79363 0 1 2332100 + 77024 27502 51453 52559 89693 89693 -0.060948083356493044 YDVPGRRSF 9 Unmodified _YDVPGRRSF_ 0 0 0 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 ENSG00000116285|ENST00000377482|ERRFI1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1728210449219 3 366.189324 1095.54614 NaN NaN NaN NaN NaN NaN NaN 57.854 1 57.854 57.354 58.354 0 0 0 0 0.84564 1 32201 32201 1.0715 0 1 77025 3212 51454 52560 89694 89694 0.0021909053200488415 YDWDCQLAL 9 Unmodified _YDWDCQLAL_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.7487182617188 2 563.747324 1125.4801 0.34255 0.00019311 1.0515 0.00059279 1.3941 0.0007859 563.748197255889 58.969 0.46915 58.969 58.748 59.217 0 61 20 4 0 0 0 0.23158 2 32899 32788;32899 20.454 6.9457 1 27238000 77026 16604 51455 52561 89695;89696 89696 -0.07762486425076531 YDWDCQLAL 9 Unmodified _YDWDCQLAL_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7495727539062 2 563.747324 1125.4801 0.4941 0.00027855 1.9372 0.0010921 2.4313 0.0013706 563.7491859162586 59.585 0.37354 59.094 58.898 59.272 -0.49079 52 17 4 0 0 0 0.34999 1 32369 32369 14.838 1.3304 1 8278200 77027 16604 51455 52561 89697 89697 -0.07762486425076531 YDWISVPL 8 Unmodified _YDWISVPL_ 0 0 0 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 ENSG00000039987|ENST00000553030|BEST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7576599121094 2 496.758018 991.501483 NaN NaN NaN NaN NaN NaN NaN 64.73 1 64.73 64.23 65.23 0 0 0 0 0.97348 1 36103 36103 5.7604 0 1 77028 646 51456 52562 89698 89698 0.005392666659417955 YDWNESIC 8 Unmodified _YDWNESIC_ 0 0 0 ENST00000535220.1_1_12:6933100-6934099:+|nuORF;ENSG00000250510|ENST00000311268|GPR162 ENST00000535220.1_1_12:6933100-6934099:+|nuORF ENST00000535220.1_1_12:6933100-6934099:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1029.733032226562 1 1029.39822 1028.39095 0.37482 0.00038584 1.0651 0.0010964 1.4399 0.0014822 1030.4028935652486 86.02 0.15356 85.517 85.468 85.621 -0.50318 6 5 2 0 0 0 8.7369 1 47127 47127 0.79363 0 1 501280 77029 10753 51457 52563 89699 89699 -0.12211321384597795 YDWRLEPGQ 9 Unmodified _YDWRLEPGQ_ 0 0 0 ENST00000573846.1_1_16:67976245-67976785:-|nuORF;ENSG00000213398|ENST00000264005|LCAT ENST00000573846.1_1_16:67976245-67976785:-|nuORF ENST00000573846.1_1_16:67976245-67976785:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7737426757812 2 582.277638 1162.54072 0.57663 0.00033576 0.15 8.7342E-05 0.72663 0.0004231 582.2773067342861 45.938 0.42647 45.938 45.722 46.149 0 60 20 4 0 0 0 0.51218 1 25003 25003 6.7232 0 1 65999000 77030 10434 51458 52564 89700 89700 -0.034046330504679645 YDWSSPLIL 9 Unmodified _YDWSSPLIL_ 0 0 0 REV__ENST00000204726.7_3_12:133346563-133346842:-|nuORF REV__ENST00000204726.7_3_12:133346563-133346842:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7874755859375 2 547.281857 1092.54916 0.51477 0.00028173 -0.39046 -0.00021369 0.12431 6.8033E-05 547.281498326917 74.483 1.1412 74.483 73.969 75.111 0 126 55 5 0 0 0 0.54444 2 41688 41244;41688 4.756 0 1 28254000 + 77031 24723 51459 52565 89701;89702 89702 0.006589208661580415 YDYMAVPY 8 Unmodified _YDYMAVPY_ 0 0 0 REV__ENST00000309534.10_1_3:88104282-88104384:-|nuORF REV__ENST00000309534.10_1_3:88104282-88104384:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2184448242188 2 511.220411 1020.42627 1.0539 0.00053877 -2.2559 -0.0011533 -1.202 -0.00061449 511.21885117772166 54.303 0.43351 48.438 48.19 48.623 -5.8653 44 25 2 0 0 0 0.72953 1 34336 34336 14.582 0 1 16702000 + 77032 25406 51460 52566 89703 89703 -0.08312658856789312 YDYPNNTIL 9 Unmodified _YDYPNNTIL_ 0 0 0 REV__ENSG00000092054|ENST00000355349|MYH7 REV__ENSG00000092054|ENST00000355349|MYH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2677001953125 2 556.766571 1111.51859 0.43719 0.00024341 -0.83702 -0.00046603 -0.39983 -0.00022261 556.7666241180343 83.603 0.39901 83.603 83.417 83.816 0 57 21 5 0 0 0 0.58466 1 46348 46348 2.3027 0 1 1216200 + 77033 17900 51461 52567 89704 89704 -0.03270857518896264 YEAAESDIM 9 Unmodified _YEAAESDIM_ 0 0 0 ENST00000472488.5_1_1:160085570-160106822:+|nuORF;ENSG00000018625|ENST00000361216|ATP1A2;ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3 ENST00000472488.5_1_1:160085570-160106822:+|nuORF ENST00000472488.5_1_1:160085570-160106822:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7164916992188 2 514.71569 1027.41683 1.0786 0.00055517 -0.68502 -0.00035259 0.39357 0.00020258 514.7154509355711 55.267 0.65852 49.346 49.047 49.706 -5.9211 148 40 5 0 0 0 0.30562 1 35390 35390 16.942 4.4107 1 849840000 77034 512 51462 52568 89705 89705 -0.09578471932991306 YEADAQLAY 9 Unmodified _YEADAQLAY_ 0 0 0 nc|ENSG00000174371|Q9UQ84-4|EXO1;ENSG00000174371|ENST00000366548|EXO1 nc|ENSG00000174371|Q9UQ84-4|EXO1 nc|ENSG00000174371|Q9UQ84-4|EXO1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.23974609375 2 522.237647 1042.46074 NaN NaN NaN NaN NaN NaN NaN 76.145 1 76.145 75.645 76.645 0 0 0 0 0.67877 1 42344 42344 10.074 0.72649 1 77035 8415 51463 52569 89706 89706 -0.05879119444330172 YEADPVLGTV 10 Unmodified _YEADPVLGTV_ 0 0 0 REV__nc|ENSG00000155657|Q8WZ42-12|TTN REV__nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2709350585938 2 532.268947 1062.52334 0.6597 0.00035114 3.8827 0.0020666 4.5424 0.0024178 532.2717063970855 36.25 0.26359 36.25 36.167 36.43 0 25 12 3 0 0 0 0.66569 1 19301 19301 6.7232 0.96273 1 3742500 + 77036 21279 51464 52570 89707 89707 -0.005419733761300449 YEAEMEETY 9 Unmodified _YEAEMEETY_ 0 0 0 nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 nc|ENSG00000119596|P49750-3|YLPM1 MSMS AL20221201_MKP_PDAC_01 4 582.7255249023438 2 582.723712 1163.43287 NaN NaN NaN NaN NaN NaN NaN 77.418 1 71.242 70.742 71.742 -6.1757 0 0 0 0.6306 1 50640 50640 11.64 0.81637 1 77037 16152 51465 52571 89708 89708 -0.1423081048669701 YEAGALER 8 Unmodified _YEAGALER_ 0 0 0 ENST00000492729.1_1_1:153941001-153941837:+|nuORF;ENST00000461688.5_1_1:153940632-153942210:+|nuORF;nc|ENSG00000143578|Q8TEY5-2|CREB3L4;ENSG00000143578|ENST00000368607|CREB3L4 ENST00000492729.1_1_1:153941001-153941837:+|nuORF ENST00000492729.1_1_1:153941001-153941837:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.7273254394531 2 454.727249 907.439946 -0.65933 -0.00029982 1.1089 0.00050423 0.44954 0.00020442 454.72772834932266 18.767 0.22895 18.79 18.645 18.874 0.023106 77 33 3 0 0 0 0.64853 2 9461 9363;9461 21.747 0 1 1533900 77038 5530 51466 52572 89709;89710 89710 -0.01747665033337853 YEAGDLAW 8 Unmodified _YEAGDLAW_ 0 0 0 REV__ENST00000473223.5_1_1:155187710-155188755:-|nuORF REV__ENST00000473223.5_1_1:155187710-155188755:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 924.4078369140625 1 924.409774 923.402498 0.33392 0.00030868 -0.48269 -0.0004462 -0.14877 -0.00013752 924.4088823807255 66.107 0.30513 66.107 65.976 66.281 0 24 14 2 0 0 0 0.50586 2 36942 36833;36942 34.187 7.8461 1 1515400 + 77039 27535 51467 52573 89711;89712 89712 -0.06226756298940472 YEAHNPKMLF 10 Unmodified _YEAHNPKMLF_ 0 0 0 REV__ENSG00000204165|ENST00000374251|CXorf65 REV__ENSG00000204165|ENST00000374251|CXorf65 MSMS AL20221201_MKP_PDAC_01 4 625.3052368164062 2 625.305341 1248.59613 NaN NaN NaN NaN NaN NaN NaN 92.23 1 86.055 85.555 86.555 -6.1757 0 0 0 0.61655 1 60986 60986 30.637 13.524 1 + 77040 24141 51468 52574 89713 89713 -0.018225428543701128 YEAIGIYLMS 10 Unmodified _YEAIGIYLMS_ 0 0 0 REV__ENSG00000184459|ENST00000300399|BPIFC REV__ENSG00000184459|ENST00000300399|BPIFC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 580.2885131835938 2 580.288825 1158.5631 0.66854 0.00038794 0.71848 0.00041693 1.387 0.00080487 580.2889151274208 74.828 0.50069 74.874 74.547 75.048 0.045959 49 22 3 0 0 0 0.54684 1 41288 41288 13.906 1.3745 1 6223800 + 77041 23421 51469 52575 89714 89714 -0.009841696970852354 YEAILAAIH 9 Unmodified _YEAILAAIH_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2810974121094 2 500.776742 999.538931 -0.38128 -0.00019094 1.9666 0.00098485 1.5854 0.00079391 501.27982210991615 27.577 0.37604 27.577 27.449 27.825 0 23 17 2 0 0 0 0.37804 1 14257 14257 13.508 4.9146 1 918070 + 77042 20108 51470 52576 89715 89715 0.03914357931569157 YEAILAAIH 9 Unmodified _YEAILAAIH_ 0 0 0 REV__ENSG00000135905|ENST00000258390|DOCK10 REV__ENSG00000135905|ENST00000258390|DOCK10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2389526367188 2 500.776742 999.538931 -0.38128 -0.00019094 1.9666 0.00098485 1.5854 0.00079391 501.27982210991615 27.577 0.37604 27.577 27.449 27.825 0 23 17 2 0 0 0 0.19298 1 14231 14231 13.508 4.1604 1 918070 + 77043 20108 51470 52576 89716 89716 0.03914357931569157 YEAIQLSL 8 Unmodified _YEAIQLSL_ 0 0 0 ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF ENSG00000188596|ENST00000524981|CFAP54 ENSG00000188596|ENST00000524981|CFAP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.75537109375 2 468.755475 935.496398 0.38386 0.00017994 0.38251 0.0001793 0.76637 0.00035924 468.7555133282406 94.038 0.27962 93.617 93.413 93.692 -0.42043 19 12 2 0 0 0 0.6895 1 51337 51337 18.135 0 1 618890 77044 9673 51471 52577 89717 89717 0.026069628033383196 YEAIQLSL 8 Unmodified _YEAIQLSL_ 0 0 0 ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF ENSG00000188596|ENST00000524981|CFAP54 ENSG00000188596|ENST00000524981|CFAP54 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 468.755475 935.496398 0.40591 0.00019027 0.94491 0.00044293 1.3508 0.0006332 468.75531774349747 99.898 0.091347 93.722 93.664 93.755 -6.1757 0.052473 0.00044716 NaN 18.135 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 15650000 77045 9673 51471 52577 0.026069628033383196 YEALELRDI 9 Unmodified _YEALELRDI_ 0 0 0 ENO1|p.N52I|1|0.12|ENSG00000074800|chr1:8871917-8871917|T/A|missense_variant ENO1|p.N52I|1|0.12|ENSG00000074800|chr1:8871917-8871917|T/A|missense_variant ENO1|p.N52I|1|0.12|ENSG00000074800|chr1:8871917-8871917|T/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.79638671875 2 561.295496 1120.57644 0.28317 0.00015894 -1.7764 -0.00099706 -1.4932 -0.00083812 561.7955503000119 64.796 0.45863 64.796 64.496 64.955 0 102 22 6 0 0 0 0.2001 1 36120 36120 23.148 1.6114 1 77707000 77046 247 51472 52578 89718 89718 0.02097404406526948 YEASAFSLPF 10 Unmodified _YEASAFSLPF_ 0 0 0 REV__ENSG00000141012|ENST00000268695|GALNS REV__ENSG00000141012|ENST00000268695|GALNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2703247070312 2 566.27149 1130.52843 0.93797 0.00053115 -3.1407 -0.0017785 -2.2027 -0.0012473 566.2699873871428 81.296 0.18266 80.803 80.75 80.932 -0.49247 10 7 2 0 0 0 0.69064 1 44540 44540 3.9444 0.3479 1 533300 + 77047 20512 51473 52579 89719 89719 -0.0316166951354262 YEAWLAEA 8 Unmodified _YEAWLAEA_ 0 0 0 ENSG00000125733|ENST00000313244|TRIP10;nc|ENSG00000125733|Q15642-4|TRIP10;ENST00000595305.5_1_19:6739772-6750443:+|nuORF;nc|ENSG00000125733|Q15642-2|TRIP10;nc|ENSG00000125733|Q15642-3|TRIP10;ENST00000600677.5_1_19:6744980-6751219:+|nuORF ENSG00000125733|ENST00000313244|TRIP10 ENSG00000125733|ENST00000313244|TRIP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.7232055664062 2 476.724175 951.433798 NaN NaN NaN NaN NaN NaN NaN 65.3 1 64.815 64.315 65.315 -0.48428 0 0 0 0.93066 1 35636 35636 14.582 0 1 77048 3875 51474 52580 89720 89720 -0.04386183264864485 YEAWQKSF 8 Unmodified _YEAWQKSF_ 0 0 0 REV__ENSG00000088386|ENST00000376503|SLC15A1 REV__ENSG00000088386|ENST00000376503|SLC15A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.7490234375 2 529.750724 1057.4869 -0.17983 -9.5265E-05 -2.8812 -0.0015263 -3.0611 -0.0016216 529.7496080324435 25.928 0.1865 25.928 25.84 26.026 0 13 8 2 0 0 0 0.3408 1 13310 13310 50.855 4.8341 1 1123800 + 77049 17804 51475 52581 89721 89721 -0.03954805482203483 YECIGYGCMS 10 Unmodified _YECIGYGCMS_ 0 0 0 REV__ENSG00000178038|ENST00000318962|ALS2CL REV__ENSG00000178038|ENST00000318962|ALS2CL MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2068481445312 2 563.206121 1124.39769 0.99204 0.00055872 0.37627 0.00021192 1.3683 0.00077064 563.2062163637943 57.041 0.3405 51.064 50.859 51.2 -5.9769 28 20 2 0 0 0 0.67033 1 36503 36503 6.2058 1.4498 1 29345000 + 77050 23020 51476 52582 89722 89722 -0.15953467819895195 YECKDCRK 8 Unmodified _YECKDCRK_ 0 0 0 ENSG00000198440|ENST00000333201|ZNF583 ENSG00000198440|ENST00000333201|ZNF583 ENSG00000198440|ENST00000333201|ZNF583 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7320556640625 2 522.733694 1043.45284 -0.27126 -0.0001418 -2.7264 -0.0014252 -2.9976 -0.001567 522.7324357236241 34.037 0.24845 34.037 33.926 34.175 0 22 12 3 0 0 0 0.58902 1 17893 17893 26.884 9.9414 1 4254900 77051 10092 51477 52583 89723 89723 -0.0671529323710729 YECKECEKTF 10 Unmodified _YECKECEKTF_ 0 0 0 ENSG00000180626|ENST00000575779|ZNF594 ENSG00000180626|ENST00000575779|ZNF594 ENSG00000180626|ENST00000575779|ZNF594 MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.2699584960938 2 640.270306 1278.52606 0.8474 0.00054257 -0.88703 -0.00056794 -0.03963 -2.5374E-05 640.2695572619323 92.231 0.96278 86.055 85.401 86.364 -6.1757 189 56 4 0 0 0 0.6606 1 61120 61120 7.2892 0.56607 1 42252000 77052 8913 51478 52584 89724 89724 -0.10206209305169978 YECKECGKYF 10 Unmodified _YECKECGKYF_ 0 0 0 ENSG00000128000|ENST00000434248|ZNF780B;ZNF10|p.S329Y|1|0.17|ENSG00000256223|chr12:133156232-133156232|C/A|missense_variant;ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A ENSG00000128000|ENST00000434248|ZNF780B ENSG00000128000|ENST00000434248|ZNF780B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.1807556152344 3 423.84747 1268.52058 -0.10281 -4.3575E-05 0.60323 0.00025568 0.50043 0.0002121 424.1822939519085 60.597 0.28107 60.107 60.01 60.291 -0.48932 29 13 3 0 0 0 0.69064 1 32992 32992 1.9064 0.57673 1 3545500 77053 4042 51479 52585 89725 89725 -0.10293888096975934 YECKRCGKAF 10 Unmodified _YECKRCGKAF_ 0 0 0 nc|ENSG00000198182|Q96SK3-2|ZNF607;nc|ENSG00000198182|Q96SK3-3|ZNF607;ENSG00000198182|ENST00000355202|ZNF607 nc|ENSG00000198182|Q96SK3-2|ZNF607 nc|ENSG00000198182|Q96SK3-2|ZNF607 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.283203125 2 602.783718 1203.55288 0.62328 0.0003757 0.8871 0.00053473 1.5104 0.00091043 602.7840486739244 72.571 1.2252 72.095 71.469 72.694 -0.47609 92 49 4 0 0 0 0.68719 1 39453 39453 4.3292 4.3292 1 10929000 77054 10059 51480 52586 89726 89726 -0.040750559033085665 YECKSEHEQK 10 Unmodified _YECKSEHEQK_ 0 0 0 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 REV__nc|ENSG00000173276|Q9ULJ3-2|ZBTB21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 427.85791015625 3 427.524043 1279.5503 -0.51392 -0.00021972 -1.728 -0.00073876 -2.2419 -0.00095848 427.5234293540785 31.917 0.24473 31.917 31.778 32.023 0 34 11 4 0 0 0 0.71276 1 16618 16618 0.62683 0 1 5794800 + 77055 22719 51481 52587 89727 89727 -0.07829232827293708 YECLECGKTF 10 Unmodified _YECLECGKTF_ 0 0 0 ENSG00000181894|ENST00000598312|ZNF329 ENSG00000181894|ENST00000598312|ZNF329 ENSG00000181894|ENST00000598312|ZNF329 MSMS AL20221201_MKP_PDAC_01 4 596.7556762695312 2 596.754292 1191.49403 NaN NaN NaN NaN NaN NaN NaN 26.858 1 23.821 23.321 24.321 -3.0365 0 0 0 0.85122 1 14838 14838 10.074 0 1 77056 9004 51482 52588 89728 89728 -0.09405576988297071 YECLMMDFF 9 Unmodified _YECLMMDFF_ 0 0 0 REV__ENSG00000134516|ENST00000520908|DOCK2 REV__ENSG00000134516|ENST00000520908|DOCK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7360229492188 2 599.734514 1197.45447 -0.061549 -3.6913E-05 2.0896 0.0012532 2.028 0.0012163 599.7360978090248 64.392 0.21853 64.392 64.255 64.473 0 16 9 2 0 0 0 0.58466 1 35886 35886 2.3027 0.24298 1 604310 + 77057 19989 51483 52589 89729 89729 -0.13635420263381093 YECNCWHL 8 Unmodified _YECNCWHL_ 0 0 0 ENST00000586523.1_1_18:43664291-43664615:-|nuORF ENST00000586523.1_1_18:43664291-43664615:-|nuORF ENST00000586523.1_1_18:43664291-43664615:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 534.2088623046875 2 534.207312 1066.40007 NaN NaN NaN NaN NaN NaN NaN 41.71 1 37.102 36.602 37.602 -4.6079 0 0 0 0.97444 1 25087 25087 5.2307 0 1 77058 15623 51484 52590 89730 89730 -0.13047251299917662 YECNDCGKTFS 11 Unmodified _YECNDCGKTFS_ 0 0 0 nc|ENSG00000130544|Q8N988|ZNF557;ENSG00000130544|ENST00000252840|ZNF557;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF;ZNF658|p.V955Dfs*97|1|0.18|ENSG00000274349|chr9:66920430-66920430|T/-|frameshift_variant;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF nc|ENSG00000130544|Q8N988|ZNF557 nc|ENSG00000130544|Q8N988|ZNF557 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.830078125 3 422.830368 1265.46927 0.24485 0.00010353 -1.184 -0.00050062 -0.93912 -0.00039709 422.83002414462953 50.982 0.37984 50.928 50.747 51.127 -0.053871 74 18 5 0 0 0 0.7326 1 27656 27656 0.40827 0 1 11558000 77059 4223 51485 52591 89731 89731 -0.15284256861673384 YEDAEYYF 8 Unmodified _YEDAEYYF_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.32177734375 2 550.21638 1098.41821 -0.48185 -0.00026512 -0.32675 -0.00017978 -0.80859 -0.0004449 550.2162479521282 55.531 0.18463 55.531 55.367 55.552 0 15 7 3 0 0 0 8.7369 1 30772 30772 10.183 6.239 1 1113500 77060 3480 51486 52592 89732 89732 -0.12706514572573724 YEDAEYYF 8 Unmodified _YEDAEYYF_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2164306640625 2 550.21638 1098.41821 NaN NaN NaN NaN NaN NaN NaN 7.8297 1 7.7382 7.2382 8.2382 -0.09156 0 0 0 0.97444 1 3847 3847 0.79363 0.10326 1 77061 3480 51486 52592 89733 89733 -0.12706514572573724 YEDAEYYF 8 Unmodified _YEDAEYYF_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.2162475585938 2 550.21638 1098.41821 NaN NaN NaN NaN NaN NaN NaN 3.4371 1 3.4247 2.9247 3.9247 -0.012334 0 0 0 0.97444 1 1748 1748 0 0 1 77062 3480 51486 52592 89734 89734 -0.12706514572573724 YEDDEEDDP 9 Unmodified _YEDDEEDDP_ 0 0 0 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 ENSG00000198700|ENST00000361565|IPO9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.5813598632812 2 563.688381 1125.36221 NaN NaN NaN NaN NaN NaN NaN 81.946 1 81.946 81.446 82.446 0 0 0 0 0.8622 1 45473 45473 0 0 1 77063 10126 51487 52593 89735 89735 -0.19545812270689567 YEDEEDDEE 9 Unmodified _YEDEEDDEE_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.6932983398438 2 586.69112 1171.36769 0.1523 8.9355E-05 -0.90148 -0.00052889 -0.74918 -0.00043954 586.6906679590734 48.095 0.54261 48.095 47.831 48.373 0 115 26 7 0 0 0 0.58865 1 26268 26268 2.0598 0 1 40732000 77064 6962 51488 52594 89736 89736 -0.21114133478886288 YEDEEDDEE 9 Unmodified _YEDEEDDEE_ 0 0 0 ENSG00000163161|ENST00000285398|ERCC3;ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENST00000462306.5_1_2:128047812-128051699:-|nuORF;ENST00000490062.1_1_2:128050061-128051699:-|nuORF ENSG00000163161|ENST00000285398|ERCC3 ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.6914672851562 2 586.69112 1171.36769 1.0634 0.00062389 -0.75245 -0.00044145 0.31096 0.00018244 586.6905930945757 55.173 0.56857 49.252 48.956 49.525 -5.9211 92 35 4 0 0 0 0.58865 1 34973 34973 2.0598 0 1 63075000 77065 6962 51488 52594 89737 89737 -0.21114133478886288 YEDEINKR 8 Unmodified _YEDEINKR_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1;CON__P04264;ENST00000508125.1_1_5:122737431-122737524:-|nuORF;ENST00000413425.1_1_3:35258032-35258143:-|nuORF;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;CON__Q8VED5;ENST00000414328.2_1_1:157043381-157043870:+|nuORF;CON__H-INV:HIT000016045;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;CON__P35908;ENSG00000172867|ENST00000309680|KRT2;CON__P35908v2;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;CON__Q3TTY5;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000205420|ENST00000330722|KRT6A;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;CON__P02538;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF ENSG00000167768|ENST00000252244|KRT1;CON__P05787;CON__P35908;ENSG00000185069|ENST00000332411|KRT76;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000186081|ENST00000252242|KRT5 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 356.1775817871094 3 356.176972 1065.50909 NaN NaN NaN NaN NaN NaN NaN 15.653 1 15.639 15.139 16.139 -0.014067 0 0 0 0.97444 1 7694 7694 1.4819 0.51963 1 + 77066 165;7667;177;9374;170;9329 51489 52595 89738 89738 -0.021046258044407296 YEDEYSYF 8 Unmodified _YEDEYSYF_ 0 0 0 ENSG00000029559|ENST00000226284|IBSP ENSG00000029559|ENST00000226284|IBSP ENSG00000029559|ENST00000226284|IBSP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.21435546875 2 558.213837 1114.41312 1.0964 0.00061201 -0.1893 -0.00010567 0.90707 0.00050634 558.2137123948152 35.085 0.45491 30.99 30.65 31.105 -4.0951 39 26 2 0 0 0 0.77907 1 20205 20205 10.183 4.4515 1 8024100 77067 580 51490 52596 89739 89739 -0.13950818435182555 YEDHKHRCPY 10 Unmodified _YEDHKHRCPY_ 0 0 0 ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653 ENST00000590548.5_1_19:11597897-11616622:-|nuORF ENST00000590548.5_1_19:11597897-11616622:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 674.298583984375 2 674.298578 1346.5826 NaN NaN NaN NaN NaN NaN NaN 11.931 1 11.943 11.443 12.443 0.012355 0 0 0 1.0061 1 5887 5887 0 0 1 77068 6817 51491 52597 89740 89740 -0.07682400633575526 YEDIAQKS 8 Unmodified _YEDIAQKS_ 0 0 0 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 ENSG00000167768|ENST00000252244|KRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.2321166992188 2 477.232364 952.450176 -0.44357 -0.00021168 0.051961 2.4798E-05 -0.39161 -0.00018689 477.232315953386 18.028 0.26601 18.042 17.873 18.139 0.013865 76 40 2 0 0 0 0.4069 2 9036 8937;9036 43.772 7.6454 1 1933500 + 77069 7667 51492 52598 89741;89742 89742 -0.027951020987529773 YEDKEDMYQEW 11 Unmodified _YEDKEDMYQEW_ 0 0 0 REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2811279296875 3 512.538018 1534.59223 -0.18848 -9.6602E-05 -0.85981 -0.00044068 -1.0483 -0.00053729 512.8721563389445 61.51 0.2371 61.02 60.858 61.095 -0.48932 18 10 2 0 0 0 0.30604 1 33509 33509 0.094841 0 1 1651600 + 77070 18266 51493 52599 89743 89743 -0.1536872192939427 YEDKKRKK 8 Unmodified _YEDKKRKK_ 0 0 0 ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B ENSG00000158417|ENST00000289371|EIF5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.8202514648438 2 547.819473 1093.62439 NaN NaN NaN NaN NaN NaN NaN 6.5043 1 6.4197 5.9197 6.9197 -0.08463 0 0 0 0.97444 1 3212 3212 0.6015 0.076735 1 77071 6583 51494 52600 89744 89744 0.0813252311722863 YEDKLLKDLF 10 Unmodified _YEDKLLKDLF_ 0 0 0 nc|ENSG00000162620|A6PVS8-2|LRRIQ3;ENSG00000162620|ENST00000354431|LRRIQ3 nc|ENSG00000162620|A6PVS8-2|LRRIQ3 nc|ENSG00000162620|A6PVS8-2|LRRIQ3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.3489990234375 2 642.347729 1282.6809 0.081009 5.2036E-05 -0.3707 -0.00023812 -0.28969 -0.00018608 642.3474913749834 68.965 0.20253 68.965 68.864 69.066 0 12 8 2 0 0 0 0.6606 1 38441 38441 7.2892 0 1 693760 77072 6884 51495 52601 89745 89745 0.050871061632278725 YEDKTRYF 8 Unmodified _YEDKTRYF_ 0 0 0 nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15 nc|ENSG00000150275|Q96QU1|PCDH15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2691650390625 2 561.266739 1120.51892 NaN NaN NaN NaN NaN NaN NaN 68.222 1 68.222 67.722 68.722 0 0 0 0 0.97444 1 38034 38034 5.2307 0.90143 1 77073 16266;16265 51496 52602 89746 89746 -0.03651437799044288 YEDLDDDSSSD 11 Unmodified _YEDLDDDSSSD_ 0 0 0 REV__ENST00000453904.2_1_2:211018217-211034955:-|nuORF REV__ENST00000453904.2_1_2:211018217-211034955:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 420.8174133300781 3 420.817727 1259.43135 -0.68864 -0.00028979 -0.38826 -0.00016339 -1.0769 -0.00045318 420.81772763652344 34.126 0.38156 34.126 33.926 34.308 0 119 19 7 0 0 0 0.73115 1 18001 18001 0.45452 0 1 119250000 + 77074 20708 51497 52603 89747 89747 -0.1879877304177171 YEDPLHLMTGF 11 Unmodified _YEDPLHLMTGF_ 0 0 0 ENST00000415344.1_1_9:132892058-132895470:+|nuORF ENST00000415344.1_1_9:132892058-132895470:+|nuORF ENST00000415344.1_1_9:132892058-132895470:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 661.8091430664062 2 661.807913 1321.60127 NaN NaN NaN NaN NaN NaN NaN 97.714 1 91.538 91.038 92.038 -6.1757 0 0 0 0.37978 1 64758 64758 29.082 5.061 1 77075 13021 51498 52604 89748 89748 -0.0466628378239875 YEDSHLGKYR 10 Unmodified _YEDSHLGKYR_ 0 0 0 ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENSG00000213471|ENST00000641754|TTLL13;ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENSG00000213471|ENST00000641754|TTLL13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.2064208984375 3 423.207043 1266.5993 -0.56282 -0.00023819 0.87684 0.00037109 0.31402 0.00013289 423.20770315470594 17.847 0.11754 17.861 17.809 17.927 0.013866 26 14 2 0 0 0 0.69385 1 8887 8887 3.5871 0.59182 1 1924900 77076 10439;15328 51499 52605 89749 89749 -0.023335764759849553 YEDSHLGKYR 10 Unmodified _YEDSHLGKYR_ 0 0 0 ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13;ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENSG00000213471|ENST00000641754|TTLL13;ENST00000561573.1_1_15:90801417-90806222:+|nuORF ENSG00000213471|ENST00000641754|TTLL13 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 423.207043 1266.5993 -0.56321 -0.00023835 1.3196 0.00055845 0.75636 0.0003201 423.2075954920584 17.728 0.027554 17.728 17.707 17.735 0 -0.066398 0.00047213 NaN 3.5871 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 741240 77077 10439;15328 51499 52605 -0.023335764759849553 YEDSRGRRF 9 Unmodified _YEDSRGRRF_ 0 0 0 nc|ENSG00000167447|Q8ND04-2|SMG8;ENSG00000167447|ENST00000300917|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 nc|ENSG00000167447|Q8ND04-2|SMG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.2925415039062 2 593.291611 1184.56867 0.44008 0.00026109 1.3445 0.00079769 1.7846 0.0010588 593.2922988367844 43.019 0.42561 43.004 42.738 43.164 -0.015667 26 19 2 0 0 0 0.48152 1 23070 23070 8.5933 0.43775 1 4493800 77078 7609 51500 52606 89750 89750 -0.016233100703857417 YEDTEDEQYF 10 Unmodified _YEDTEDEQYF_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.7417602539062 3 446.838462 1337.49356 -0.11372 -5.0817E-05 -0.75299 -0.00033646 -0.86671 -0.00038728 446.83827999155886 55.239 0.40791 55.239 55.029 55.437 0 29 17 2 0 0 0 0.24005 1 30680 30680 0.15932 0 1 4398300 + 77079 23540 51501 52607 89751 89751 -0.16169001902790114 YEDTEDEQYF 10 Unmodified _YEDTEDEQYF_ 0 0 0 REV__ENSG00000185958|ENST00000327337|FAM186A REV__ENSG00000185958|ENST00000327337|FAM186A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 446.838462 1337.49356 -0.18589 -8.3064E-05 -0.67024 -0.00029949 -0.85613 -0.00038255 446.8384630937235 55.917 0.32771 55.439 55.192 55.52 -0.47798 0.099829 5.8733E-05 NaN 0.15932 33 15 3 NaN NaN NaN NaN 0 NaN NaN 0 4371900 + 77080 23540 51501 52607 -0.16169001902790114 YEEAMKEVL 9 Unmodified _YEEAMKEVL_ 0 0 0 nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14 nc|ENSG00000039560|Q9P0K7-4|RAI14 nc|ENSG00000039560|Q9P0K7-4|RAI14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3260498046875 2 556.270632 1110.52671 0.7859 0.00043717 0.40403 0.00022475 1.1899 0.00066192 556.2712624995969 72.148 0.17999 71.672 71.572 71.752 -0.4761 11 7 2 0 0 0 0.209 1 39527 39527 7.2892 0 1 598100 77081 644 51502 52608 89752 89752 -0.02413046593778745 YEEEKLYEE 9 Unmodified _YEEEKLYEE_ 0 0 0 REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7974243164062 2 616.271884 1230.52921 -0.24797 -0.00015282 -0.52719 -0.00032489 -0.77516 -0.00047771 616.2724565604865 48.538 0.12901 48.538 48.47 48.6 0 7 5 2 0 0 0 0.20139 1 26620 26620 10.824 1.4408 1 1402400 + 77082 22057 51503 52609 89753 89753 -0.0768291965514436 YEEELVRRE 9 Unmodified _YEEELVRRE_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MSMS AL20221201_MKP_PDAC_01 4 408.2061157226562 3 408.206932 1221.59897 NaN NaN NaN NaN NaN NaN NaN 38.825 1 34.374 33.874 34.874 -4.4509 0 0 0 0.51965 1 22960 22960 15.248 8.6181 1 77083 10141 51504 52610 89754 89754 -0.0029699619583425374 YEEESSSTDA 10 Unmodified _YEEESSSTDA_ 0 0 0 REV__NCKAP1L|p.P990S|1|0.11|ENSG00000123338|chr12:54536140-54536140|C/T|missense_variant REV__NCKAP1L|p.P990S|1|0.11|ENSG00000123338|chr12:54536140-54536140|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2110595703125 2 559.212023 1116.40949 0.55087 0.00030805 -1.6921 -0.00094625 -1.1412 -0.0006382 559.2112185814689 58.09 0.42291 58.09 57.917 58.34 0 42 16 4 0 0 0 0.52888 1 32321 32321 14.838 1.7958 1 4120600 + 77084 30054 51505 52611 89755 89755 -0.14405532999671777 YEEFIPTPLT 10 Unmodified _YEEFIPTPLT_ 0 0 0 ENST00000432416.5_1_2:208445653-208486541:-|nuORF ENST00000432416.5_1_2:208445653-208486541:-|nuORF ENST00000432416.5_1_2:208445653-208486541:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 605.3035278320312 2 605.305529 1208.59651 NaN NaN NaN NaN NaN NaN NaN 92.289 1 86.114 85.614 86.614 -6.1757 0 0 0 0.66657 1 61027 61027 18.146 1.0335 1 77085 13277 51506 52612 89756 89756 0.0005515534646747255 YEEGTDPEI 9 Unmodified _YEEGTDPEI_ 0 0 0 nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4 nc|ENSG00000156920|Q8IZF6-3|ADGRG4 nc|ENSG00000156920|Q8IZF6-3|ADGRG4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.4867858886719 3 351.485472 1051.43459 NaN NaN NaN NaN NaN NaN NaN 63.37 1 63.37 62.87 63.87 0 0 0 0 0.7243 1 35346 35346 5.2969 0 1 77086 6488 51507 52613 89757 89757 -0.08907433406466225 YEEHEEYI 8 Unmodified _YEEHEEYI_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2326049804688 2 556.232561 1110.45057 1.0063 0.00055972 0.56332 0.00031334 1.5696 0.00087306 556.2329661330781 51.338 0.67911 51.338 50.843 51.522 0 89 32 5 0 0 0 0.80143 1 28456 28456 5.7604 0.52976 1 41147000 77087 6400 51508 52614 89758 89758 -0.10023727169573249 YEEIANRS 8 Unmodified _YEEIANRS_ 0 0 0 ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENST00000547890.5_1_12:52910884-52911722:-|nuORF ENSG00000186081|ENST00000252242|KRT5 ENSG00000186081|ENST00000252242|KRT5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 491.2352600097656 2 491.235439 980.456324 NaN NaN NaN NaN NaN NaN NaN 18.2 1 18.214 17.714 18.714 0.013865 0 0 0 0.93813 1 9107 9107 13.042 2.9685 1 + 77088 170 51509 52615 89759 89759 -0.034685838672317004 YEEKEWPVPNY 11 Unmodified _YEEKEWPVPNY_ 0 0 0 REV__ENSG00000185238|ENST00000331079|PRMT3 REV__ENSG00000185238|ENST00000331079|PRMT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 727.8374633789062 2 727.33535 1452.65615 1.1836 0.00086084 -0.34497 -0.00025091 0.83858 0.00060993 727.3351946080769 64.567 0.37533 58.391 58.15 58.525 -6.1757 30 20 2 0 0 0 0.42108 1 41889 41889 20.415 0 1 13079000 + 77089 23485 51510 52616 89760 89760 -0.05207573710140423 YEEKLWQRYQL 11 Unmodified _YEEKLWQRYQL_ 0 0 0 REV__ENST00000605035.5_1_6:348606-348948:+|nuORF REV__ENST00000605035.5_1_6:348606-348948:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7904663085938 3 519.268302 1554.78308 0.17796 9.2408E-05 0.2288 0.00011881 0.40676 0.00021122 519.2685632337336 56.561 0.21849 56.493 56.38 56.598 -0.068741 24 10 3 0 0 0 0.306 1 30818 30818 0.45452 0.35968 1 7785900 + 77090 29290 51511 52617 89761 89761 0.02787772234842123 YEEKYDEAVDV 11 Unmodified _YEEKYDEAVDV_ 0 0 0 nc|ENSG00000126562|Q96J92-2|WNK4;nc|ENSG00000126562|Q96J92-3|WNK4;ENSG00000126562|ENST00000246914|WNK4 nc|ENSG00000126562|Q96J92-2|WNK4 nc|ENSG00000126562|Q96J92-2|WNK4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.3009643554688 2 680.301172 1358.58779 NaN NaN NaN NaN NaN NaN NaN 0.99349 1 0.97287 0.47287 1.4729 -0.020623 0 0 0 0.9435 1 510 510 0 0 1 77091 3957 51512 52618 89762 89762 -0.07715863080693453 YEELADRKL 9 Unmodified _YEELADRKL_ 0 0 0 ENSG00000134207|ENST00000610222|SYT6;nc|ENSG00000134207|Q5T7P8-2|SYT6 ENSG00000134207|ENST00000610222|SYT6 ENSG00000134207|ENST00000610222|SYT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.80029296875 2 568.800946 1135.58734 0.16149 9.1854E-05 -0.26038 -0.00014811 -0.098895 -5.6252E-05 568.8007531742975 31.606 0.31499 31.606 31.463 31.778 0 43 15 4 0 0 0 0.56345 1 16546 16546 3.5965 0 1 13112000 77092 4568 51513 52619 89763 89763 0.02496806780800398 YEELCPRGPGF 11 Unmodified _YEELCPRGPGF_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.2926025390625 2 634.29243 1266.57031 0.32386 0.00020542 0.011685 7.4118E-06 0.33554 0.00021283 634.2927331695128 62.067 0.7066 55.891 55.576 56.283 -6.1757 91 39 3 0 0 0 0.39949 1 40124 40124 21.537 2.175 1 36087000 77093 7437 51514 52620 89764 89764 -0.0523143709665419 YEELERVVL 9 Unmodified _YEELERVVL_ 0 0 0 ENSG00000171303|ENST00000302909|KCNK3 ENSG00000171303|ENST00000302909|KCNK3 ENSG00000171303|ENST00000302909|KCNK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.310791015625 2 575.311146 1148.60774 -0.03929 -2.2604E-05 -0.96513 -0.00055525 -1.0044 -0.00057785 575.3105374550794 51.505 0.12801 51.091 51.028 51.156 -0.41351 10 6 2 0 0 0 0.28023 1 27806 27806 18.146 0.7037 1 1876300 77094 8088 51515 52621 89765 89765 0.039379774406370416 YEELNEMCH 9 Unmodified _YEELNEMCH_ 0 0 0 ENSG00000168930|ENST00000329758|TRIM49;ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B ENSG00000168930|ENST00000329758|TRIM49 ENSG00000168930|ENST00000329758|TRIM49 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2255859375 2 584.225899 1166.43724 0.5241 0.00030619 -0.93313 -0.00054516 -0.40903 -0.00023896 584.2249745570771 82.388 0.28836 81.893 81.767 82.055 -0.4952 27 11 3 0 0 0 0.58865 1 45096 45096 2.0598 0 1 1078700 77095 7817 51516 52622 89766 89766 -0.13931624544807164 YEELPELSF 9 Unmodified _YEELPELSF_ 0 0 0 ENSG00000197479|ENST00000354757|PCDHB11 ENSG00000197479|ENST00000354757|PCDHB11 ENSG00000197479|ENST00000354757|PCDHB11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1818237304688 3 376.181612 1125.52301 -0.4694 -0.00017658 0.14153 5.324E-05 -0.32788 -0.00012334 376.1818190144009 29.619 0.35319 29.619 29.451 29.804 0 48 22 4 0 0 0 0.2143 1 15333 15333 15.248 0 1 9263900 77096 9960 51517 52623 89767 89767 -0.034733930960101134 YEELPELSF 9 Unmodified _YEELPELSF_ 0 0 0 ENSG00000197479|ENST00000354757|PCDHB11 ENSG00000197479|ENST00000354757|PCDHB11 ENSG00000197479|ENST00000354757|PCDHB11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.1950378417969 3 376.181612 1125.52301 1.4911 0.00056092 -2.4611 -0.00092582 -0.97004 -0.00036491 376.18072446967733 32.482 0.39991 28.626 28.432 28.832 -3.8562 36 21 2 0 0 0 0.21021 1 18503 18503 7.609 5.8667 1 15521000 77097 9960 51517 52623 89768 89768 -0.034733930960101134 YEELYDTFI 9 Unmodified _YEELYDTFI_ 0 0 0 REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.2755737304688 2 596.774062 1191.53357 0.54382 0.00032454 -0.85484 -0.00051015 -0.31103 -0.00018561 596.7730473160267 87.331 0.24497 86.827 86.655 86.9 -0.50423 15 9 2 0 0 0 0.54444 1 47788 47788 4.756 0 1 528220 + 77098 18195 51518 52624 89769 89769 -0.05453410441577944 YEELYDTFI 9 Unmodified _YEELYDTFI_ 0 0 0 REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A REV__nc|ENSG00000101844|Q8WYN0-2|ATG4A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 596.774062 1191.53357 0.54382 0.00032454 -0.85484 -0.00051015 -0.31103 -0.00018561 596.7730473160267 87.331 0.24497 86.827 86.655 86.9 -0.50423 0.024228 -0.0014429 NaN 4.756 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 528220 + 77099 18195 51518 52624 -0.05453410441577944 YEEMLSYAL 9 Unmodified _YEEMLSYAL_ 0 0 0 ENSG00000148343|ENST00000684074|MIGA2;ENST00000445183.5_1_9:131823610-131830486:+|nuORF;ENST00000495975.1_1_9:131823581-131830228:+|nuORF ENSG00000148343|ENST00000684074|MIGA2 ENSG00000148343|ENST00000684074|MIGA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7607421875 2 559.757358 1117.50016 0.74707 0.00041818 3.3245 0.0018609 4.0716 0.0022791 559.7600056130623 57.362 0.35447 57.362 57.177 57.532 0 30 15 2 0 0 0 0.087258 1 31881 31881 36.044 7.5574 1 3055800 77100 5921 51519 52625 89770 89770 -0.053887354851212876 YEEPHLFATF 10 Unmodified _YEEPHLFATF_ 0 0 0 REV__nc|ENSG00000128595|O43852-15|CALU REV__nc|ENSG00000128595|O43852-15|CALU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.2926635742188 2 627.295496 1252.57644 NaN NaN NaN NaN NaN NaN NaN 44.403 1 44.403 43.903 44.903 0 0 0 0 0.48706 1 24158 24158 26.884 6.43 1 + 77101 19621 51520 52626 89771 89771 -0.03974595593490449 YEEQHPEL 8 Unmodified _YEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7362670898438 2 522.735271 1043.45599 0.53693 0.00028067 0.31048 0.0001623 0.84741 0.00044297 522.7353401318313 38.505 0.46415 34.136 33.9 34.364 -4.3689 71 29 3 0 0 0 0.11159 1 22889 22889 96.285 28.204 1 57743000 77102 394 51521 52627 89772 89772 -0.064000035871004 YEEQIEAFK 9 Unmodified _YEEQIEAFK_ 0 0 0 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 ENSG00000113600|ENST00000263408|C9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1871032714844 3 386.188878 1155.5448 -0.49327 -0.0001905 -1.8596 -0.00071815 -2.3529 -0.00090865 386.188575852891 25.642 0.16705 25.642 25.528 25.695 0 17 7 3 0 0 0 0.36964 1 13151 13151 9.544 6.4717 1 910210 77103 2982 51522 52628 89773 89773 -0.026745883474404764 YEERFLQEETV 11 Unmodified _YEERFLQEETV_ 0 0 0 ENSG00000162745|ENST00000294794|OLFML2B ENSG00000162745|ENST00000294794|OLFML2B ENSG00000162745|ENST00000294794|OLFML2B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 721.38037109375 2 721.843539 1441.67252 0.08172 5.8989E-05 -0.59892 -0.00043233 -0.5172 -0.00037334 721.8435281709883 30.176 0.18616 30.206 30.114 30.3 0.030106 10 7 2 0 0 0 0.30572 1 15798 15798 1.3295 0 1 453490 77104 6906 51523 52629 89774 89774 -0.030644925440583393 YEESCLISY 9 Unmodified _YEESCLISY_ 0 0 0 REV__ENSG00000118007|ENST00000383202|STAG1 REV__ENSG00000118007|ENST00000383202|STAG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.4972839355469 3 369.495202 1105.46378 0.024324 8.9874E-06 3.2607 0.0012048 3.285 0.0012138 369.4974517280119 37.488 0.27574 37.488 37.369 37.645 0 43 14 4 0 0 0 0.54444 1 19971 19971 2.7352 0.23671 1 9566300 + 77105 19132 51524 52630 89775 89775 -0.08473612381817475 YEEVFYEL 8 Unmodified _YEEVFYEL_ 0 0 0 REV__ENST00000521858.5_1_5:70355111-70356688:-|nuORF REV__ENST00000521858.5_1_5:70355111-70356688:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2510986328125 2 546.250223 1090.48589 NaN NaN NaN NaN NaN NaN NaN 41.673 1 41.673 41.173 42.173 0 0 0 0 0.95201 1 22503 22503 10.183 0 1 + 77106 20791 51525 52631 89776 89776 -0.05573064641748715 YEEVRPGDFG 10 Unmodified _YEEVRPGDFG_ 0 0 0 REV__nc|ENSG00000140853|Q86WI3-3|NLRC5 REV__nc|ENSG00000140853|Q86WI3-3|NLRC5 MSMS AL20221201_MKP_PDAC_01 4 390.177490234375 3 390.180494 1167.51965 NaN NaN NaN NaN NaN NaN NaN 21.77 1 19.035 18.535 19.535 -2.7348 0 0 0 0.94014 1 11680 11680 5.7834 2.4638 1 + 77107 20498 51526 52632 89777 89777 -0.057406431500112376 YEFCCWVQLE 10 Unmodified _YEFCCWVQLE_ 0 0 0 ENST00000472152.5_1_1:79120733-79120823:+|nuORF ENST00000472152.5_1_1:79120733-79120823:+|nuORF ENST00000472152.5_1_1:79120733-79120823:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8538818359375 3 440.519353 1318.53623 0.67191 0.00029599 -0.15156 -6.6765E-05 0.52035 0.00022922 440.51962444974043 74.087 0.26374 73.611 73.504 73.768 -0.47588 29 10 4 0 0 0 0.69064 1 40545 40545 1.9064 0 1 1401900 77108 13896 51527 52633 89778 89778 -0.11029601579934933 YEFDKFWF 8 Unmodified _YEFDKFWF_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.268798828125 2 591.26875 1180.52295 NaN NaN NaN NaN NaN NaN NaN 30.661 1 30.691 30.191 31.191 0.030106 0 0 0 0.97444 1 16038 16038 2.3027 0.24298 1 77109 8833 51528 52634 89779 89779 -0.060093483053378804 YEFEDYTMI 9 Unmodified _YEFEDYTMI_ 0 0 0 REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B REV__nc|ENSG00000179750|Q9UH17-3|APOBEC3B MSMS AL20221201_MKP_PDAC_01 4 404.1687927246094 3 404.170607 1209.48999 NaN NaN NaN NaN NaN NaN NaN 100.38 1 94.208 93.708 94.708 -6.1757 0 0 0 0.71962 1 67111 67111 8.7454 5.4258 1 + 77110 23115 51529 52635 89780 89780 -0.10637343210373729 YEFLLWIQ 8 Unmodified _YEFLLWIQ_ 0 0 0 REV__ENSG00000182255|ENST00000328224|KCNA4 REV__ENSG00000182255|ENST00000328224|KCNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7965087890625 2 556.294768 1110.57498 1.0649 0.00059242 -2.7772 -0.0015449 -1.7123 -0.00095252 556.2931829828821 50.39 0.36066 49.998 49.811 50.171 -0.3923 31 17 3 0 0 0 0.72953 1 27098 27098 14.582 1.0738 1 5069200 + 77111 23255 51530 52636 89781 89781 0.024118151084394412 YEFQDQANE 9 Unmodified _YEFQDQANE_ 0 0 0 REV__ENSG00000178307|ENST00000317635|TMEM11 REV__ENSG00000178307|ENST00000317635|TMEM11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2333374023438 2 572.233093 1142.45163 0.99279 0.0005681 0.32612 0.00018662 1.3189 0.00075472 572.2330170346996 80.893 0.33821 80.4 80.201 80.539 -0.49247 32 14 3 0 0 0 0.32871 1 44250 44250 15.847 1.9411 1 1393200 + 77112 23035 51531 52637 89782 89782 -0.11389512800656121 YEFYRYFET 9 Unmodified _YEFYRYFET_ 0 0 0 ENST00000546398.5_1_12:95611596-95687545:+|nuORF;ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT ENST00000546398.5_1_12:95611596-95687545:+|nuORF ENST00000546398.5_1_12:95611596-95687545:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 659.292236328125 2 659.292953 1316.57135 -0.54706 -0.00036067 0.0088246 5.818E-06 -0.53824 -0.00035485 659.2928539684057 44.883 0.18792 44.883 44.828 45.016 0 15 9 2 0 0 0 0.12424 1 24441 24441 30.637 3.0077 1 6884100 77113 571 51532 52638 89783 89783 -0.07426899456118008 YEGADQLTLN 10 Unmodified _YEGADQLTLN_ 0 0 0 REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG REV__nc|ENSG00000161649|Q6UXG3-3|CD300LG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2672119140625 2 562.266936 1122.51932 0.25168 0.00014151 -1.0484 -0.00058949 -0.79673 -0.00044798 562.2666024176004 62.168 0.37364 62.168 61.951 62.324 0 38 18 3 0 0 0 0.42068 1 34653 34653 20.454 0 1 6083200 + 77114 21604 51533 52639 89784 89784 -0.03704062869860536 YEGFQPGMY 9 Unmodified _YEGFQPGMY_ 0 0 0 BMS1|p.R881Q|1|0.19|ENSG00000165733|chr10:42820297-42820297|G/A|missense_variant BMS1|p.R881Q|1|0.19|ENSG00000165733|chr10:42820297-42820297|G/A|missense_variant BMS1|p.R881Q|1|0.19|ENSG00000165733|chr10:42820297-42820297|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.2235717773438 2 546.228768 1090.44298 NaN NaN NaN NaN NaN NaN NaN 77.865 1 77.383 76.883 77.883 -0.4826 0 0 0 0.50124 1 42631 42631 15.847 2.3393 1 77115 44 51534 52640 89785 89785 -0.09862157970815133 YEGGQLCAMCF 11 Unmodified _YEGGQLCAMCF_ 0 0 0 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 ENSG00000101825|ENST00000217939|MXRA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2424926757812 2 611.240495 1220.46644 0.22553 0.00013785 0.40293 0.00024629 0.62846 0.00038414 611.2413165851907 65.513 0.431 65.029 64.791 65.222 -0.48428 47 19 4 0 0 0 0.71036 1 35811 35811 3.2813 0.97858 1 12188000 77116 1992 51535 52641 89786 89786 -0.1349780352018115 YEGNCAEEDQ 10 Unmodified _YEGNCAEEDQ_ 0 0 0 ENSG00000104760|ENST00000427924|FGL1 ENSG00000104760|ENST00000427924|FGL1 ENSG00000104760|ENST00000427924|FGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2074584960938 2 579.206218 1156.39788 0.33546 0.0001943 2.3763 0.0013764 2.7118 0.0015707 579.2075369848657 48.07 0.3543 48.07 47.897 48.251 0 29 17 2 0 0 0 0.56348 1 26306 26306 13.042 5.1323 1 3993600 77117 2232 51536 52642 89787 89787 -0.1740605329466689 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.7620239257812 2 569.76182 1137.50909 -0.35238 -0.00020077 0.0049969 2.847E-06 -0.34739 -0.00019793 569.7619004472964 33.999 0.28122 33.999 33.822 34.103 0 48 13 5 0 0 0 0.52888 1 17936 17936 14.838 14.838 1 106890000 + 77118 29251 51537 52643 89788 89788 -0.05416625804423347 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7622680664062 2 569.76182 1137.50909 -0.097079 -5.5312E-05 0.61654 0.00035128 0.51946 0.00029597 569.7621876804532 34.177 0.38599 33.986 33.744 34.13 -0.19131 43 14 4 0 0 0 0.52888 1 17900 17900 14.838 14.838 1 23967000 + 77119 29251 51537 52643 89789 89789 -0.05416625804423347 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.7626953125 2 569.76182 1137.50909 0.19654 0.00011198 0.53325 0.00030382 0.72979 0.00041581 569.7623117134389 33.893 0.2205 33.922 33.816 34.036 0.028934 16 9 2 0 0 0 0.42068 1 17845 17845 20.454 1.1966 1 3001200 + 77120 29251 51537 52643 89790 89790 -0.05416625804423347 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 569.76182 1137.50909 -0.35238 -0.00020077 0.0049969 2.847E-06 -0.34739 -0.00019793 569.7619004472964 33.999 0.28122 33.999 33.822 34.103 0 -0.04193 -0.00024624 NaN 20.454 48 13 5 NaN NaN NaN NaN 0 NaN NaN 0 106890000 + 77121 29251 51537 52643 -0.05416625804423347 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 569.76182 1137.50909 0.19654 0.00011198 0.53325 0.00030382 0.72979 0.00041581 569.7623117134389 33.893 0.2205 33.922 33.816 34.036 0.028934 -0.11924 0.00035571 NaN 20.454 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 3001200 + 77122 29251 51537 52643 -0.05416625804423347 YEGSHLGNYV 10 Unmodified _YEGSHLGNYV_ 0 0 0 REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF REV__ENST00000600659.2_1_19:8387846-8388053:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 569.76182 1137.50909 0.44682 0.00025458 0.32666 0.00018612 0.77348 0.0004407 569.7622659448492 38.626 0.38628 34.258 34.03 34.416 -4.3689 0.21656 0.00012031 NaN 20.454 60 24 3 NaN NaN NaN NaN 0 NaN NaN 0 40963000 + 77123 29251 51537 52643 -0.05416625804423347 YEGVKLDSHT 10 Unmodified _YEGVKLDSHT_ 0 0 0 REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF;REV__ENSG00000100697|ENST00000343455|DICER1 REV__ENST00000529206.1_1_14:95595738-95599795:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.7802734375 2 574.782753 1147.55095 NaN NaN NaN NaN NaN NaN NaN 50.925 1 45.276 44.776 45.776 -5.649 0 0 0 0.6416 1 32003 32003 19.362 1.2156 1 + 77124 28419;18102 51538 52644 89791 89791 -0.016920701159051532 YEGVPLPFY 9 Unmodified _YEGVPLPFY_ 0 0 0 ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF ENSG00000014138|ENST00000265465|POLA2 ENSG00000014138|ENST00000265465|POLA2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.2716674804688 2 542.771126 1083.5277 0.46113 0.00025029 -1.6965 -0.00092083 -1.2354 -0.00067054 542.7699251519421 90.08 0.33556 90.122 89.966 90.302 0.042175 30 11 4 0 0 0 0.19891 1 50027 50027 11.64 3.7301 1 12141000 77125 484 51539 52645 89792 89792 -0.010724641625756703 YEGYQENEYDE 11 Unmodified _YEGYQENEYDE_ 0 0 0 REV__ENSG00000130749|ENST00000253048|ZC3H4 REV__ENSG00000130749|ENST00000253048|ZC3H4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 480.1809692382812 3 480.180888 1437.52083 NaN NaN NaN NaN NaN NaN NaN 13.729 1 13.737 13.237 14.237 0.0073986 0 0 0 0.9435 1 6775 6775 0 0 1 + 77126 19740 51540 52646 89793 89793 -0.18042518362426563 YEHDLLSL 8 Unmodified _YEHDLLSL_ 0 0 0 REV__ENST00000522492.1_1_5:148651531-148685943:+|nuORF REV__ENST00000522492.1_1_5:148651531-148685943:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.250732421875 2 495.250557 988.486562 0.18706 9.2643E-05 0.73046 0.00036176 0.91752 0.0004544 495.25090453065434 89.606 0.36458 89.606 89.42 89.785 0 42 24 2 0 0 0 0.80676 1 49512 49512 2.5775 0 1 828210 + 77127 21387 51541 52647 89794 89794 -0.008142252020206797 YEHGNRQF 8 Unmodified _YEHGNRQF_ 0 0 0 REV__ENST00000225726.9_1_17:61823269-61823485:-|nuORF REV__ENST00000225726.9_1_17:61823269-61823485:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.738525390625 2 525.741222 1049.46789 1.1948 0.00062816 -3.9171 -0.0020594 -2.7223 -0.0014312 525.7384473437733 54.494 0.28825 54.494 54.309 54.597 0 17 12 2 0 0 0 0.67481 1 30264 30264 19.439 4.8573 1 1852500 + 77128 24779 51542 52648 89795 89795 -0.054863420532456075 YEHRTSCLLF 10 Unmodified _YEHRTSCLLF_ 0 0 0 ENSG00000099937|ENST00000215727|SERPIND1;CON__ENSEMBL:ENSBTAP00000018574 ENSG00000099937|ENST00000215727|SERPIND1 ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5415954589844 3 423.541257 1267.60194 -0.42994 -0.0001821 0.050334 2.1319E-05 -0.37961 -0.00016078 423.5414470661023 36.586 0.25906 36.336 36.212 36.471 -0.2497 26 11 4 0 0 0 0.63399 1 19189 19189 8.4443 5.8131 1 8002400 + 77129 1721 51543 52649 89796 89796 -0.021154443427121805 YEHRTSCLLF 10 Unmodified _YEHRTSCLLF_ 0 0 0 ENSG00000099937|ENST00000215727|SERPIND1;CON__ENSEMBL:ENSBTAP00000018574 ENSG00000099937|ENST00000215727|SERPIND1 ENSG00000099937|ENST00000215727|SERPIND1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 423.541257 1267.60194 -0.19461 -8.2425E-05 1.2113 0.00051303 1.0167 0.00043061 423.54213641333797 36.26 0.16502 36.285 36.187 36.352 0.024967 -0.025794 0.0013513 NaN 8.4443 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 735800 + 77130 1721 51543 52649 -0.021154443427121805 YEHVKARF 8 Unmodified _YEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2792358398438 2 525.279983 1048.54541 -0.10229 -5.3732E-05 -0.61829 -0.00032478 -0.72059 -0.00037851 525.2795041785915 23.402 0.16873 23.414 23.35 23.519 0.012394 12 7 2 0 0 0 0.079701 1 11937 11937 111.29 78.982 1 6576900 77131 3148 51544 52650 89797 89797 0.023082958829490963 YEHVKARF 8 Unmodified _YEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2799682617188 2 525.279983 1048.54541 NaN NaN NaN NaN NaN NaN NaN 23.263 1 23.28 22.78 23.78 0.01749 0 0 0 0.03089 1 11976 11976 123.45 94.369 1 77132 3148 51544 52650 89798 89798 0.023082958829490963 YEHVKARF 8 Unmodified _YEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.5223999023438 3 350.522414 1048.54541 0.88614 0.00031061 -3.5577 -0.001247 -2.6715 -0.00093643 350.52101145849883 26.198 0.5035 23.247 22.955 23.459 -2.9511 73 29 3 0 0 0 0.36898 2 14397 14397;14514 47.749 35.508 1 61722000 77133 3148 51544 52650 89799;89800 89799 0.023082958829490963 YEHYGKYDLN 10 Unmodified _YEHYGKYDLN_ 0 0 0 REV__ENSG00000187775|ENST00000389840|DNAH17 REV__ENSG00000187775|ENST00000389840|DNAH17 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.2955932617188 2 651.293485 1300.57242 NaN NaN NaN NaN NaN NaN NaN 53.148 1 52.697 52.197 53.197 -0.45173 0 0 0 0.88176 1 28749 28749 8.7454 0.15213 1 + 77134 23661 51545 52651 89801 89801 -0.06584685087182152 YEIAFPTRV 9 Unmodified _YEIAFPTRV_ 0 0 0 ENST00000593534.1_1_19:8669890-8670235:-|nuORF;nc|ENSG00000142303|Q9H324|ADAMTS10;ENSG00000142303|ENST00000597188|ADAMTS10 ENST00000593534.1_1_19:8669890-8670235:-|nuORF ENST00000593534.1_1_19:8669890-8670235:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8666076660156 3 365.865958 1094.57605 0.80626 0.00029498 1.1941 0.00043688 2.0004 0.00073187 365.8663840493013 14.552 0.45794 12.049 11.83 12.287 -2.5029 182 86 3 0 0 0 0.46501 2 7413 7413;7490 6.1918 1.663 1 41936000 77135 5407 51546 52652 89802;89803 89802 0.03254029477329823 YEIEAKNQI 9 Unmodified _YEIEAKNQI_ 0 0 0 REV__ENSG00000188404|ENST00000236147|SELL REV__ENSG00000188404|ENST00000236147|SELL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.2882080078125 2 554.287671 1106.56079 0.12542 6.9521E-05 1.3062 0.00072402 1.4316 0.00079354 554.2884676276227 70.964 0.29741 70.964 70.867 71.164 0 21 15 2 0 0 0 0.25681 1 39524 39524 19.257 4.8516 1 889480 + 77136 23710 51547 52653 89804 89804 0.011771178894605328 YEIERKLL 8 Unmodified _YEIERKLL_ 0 0 0 REV__ENSG00000162753|ENST00000367714|SLC9C2 REV__ENSG00000162753|ENST00000367714|SLC9C2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.3103637695312 2 532.310949 1062.60735 NaN NaN NaN NaN NaN NaN NaN 73.062 1 73.062 72.562 73.562 0 0 0 0 0.96305 1 40675 40675 7.9102 0 1 + 77137 21687 51548 52654 89805 89805 0.0785460251142922 YEIITPWRL 9 Unmodified _YEIITPWRL_ 0 0 0 nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3326416015625 2 595.832049 1189.64954 0.57501 0.00034261 -0.28076 -0.00016729 0.29425 0.00017532 595.8319862304178 48.404 0.57558 43.17 42.808 43.384 -5.2339 121 34 5 0 0 0 0.19361 1 29944 29944 32.305 10.769 1 247130000 77138 7785 51549 52655 89806 89806 0.06230577919791358 YEIPGLEPIT 10 Unmodified _YEIPGLEPIT_ 0 0 0 ENSG00000116221|ENST00000360840|MRPL37;ENST00000336230.10_1_1:54665916-54675667:+|nuORF ENSG00000116221|ENST00000360840|MRPL37 ENSG00000116221|ENST00000360840|MRPL37 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.8013305664062 2 566.300247 1130.58594 0.35669 0.000202 0.8056 0.00045621 1.1623 0.00065821 566.3005598695487 56.053 0.30547 50.132 49.937 50.243 -5.9211 25 17 2 0 0 0 0.33553 1 35721 35721 25.399 6.1423 1 24445000 77139 3208 51550 52656 89807 89807 0.025871726920513538 YEIRKQLQRRQ 11 Unmodified _YEIRKQLQRRQ_ 0 0 0 REV__nc|ENSG00000204053|P12525|MYCLP1 REV__nc|ENSG00000204053|P12525|MYCLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 759.9400024414062 2 759.436598 1516.85864 0.75979 0.00057702 0.042442 3.2232E-05 0.80224 0.00060925 759.4379475207189 101.83 0.3571 95.657 95.582 95.939 -6.1757 91 20 6 0 0 0 0.6889 1 68331 68331 5.2969 3.9674 1 35766000 + 77140 29904 51551 52657 89808 89808 0.12088794205783415 YEISSVPTFL 10 Unmodified _YEISSVPTFL_ 0 0 0 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2973022460938 2 578.300247 1154.58594 1.2372 0.00071549 -1.3491 -0.00078021 -0.11191 -6.4715E-05 578.8020853587434 96.321 0.21286 90.145 90.007 90.22 -6.1757 33 12 4 0 0 0 0.32493 1 63825 63825 37.974 1.847 1 17005000 77141 2540 51552 52658 89809 89809 0.014831726920419896 YEISSVPTFL 10 Unmodified _YEISSVPTFL_ 0 0 0 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 ENSG00000108010|ENST00000331244|GLRX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.300247 1154.58594 0.30057 0.00017382 1.0868 0.00062848 1.3873 0.0008023 578.3006612265391 89.81 0.27777 89.81 89.69 89.967 0 -0.16766 0.00039857 NaN 37.974 23 18 2 NaN NaN NaN NaN 0 NaN NaN 0 642080 77142 2540 51552 52658 0.014831726920419896 YEITYVRL 8 Unmodified _YEITYVRL_ 0 0 0 ENST00000480883.1_1_9:133884589-133967089:+|nuORF;ENSG00000050555|ENST00000361069|LAMC3 ENST00000480883.1_1_9:133884589-133967089:+|nuORF ENST00000480883.1_1_9:133884589-133967089:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.5451354980469 3 352.862325 1055.56515 1.1089 0.0003913 -0.99186 -0.00034999 0.11709 4.1315E-05 352.86213649259025 27.893 0.22254 24.745 24.656 24.878 -3.1482 19 11 2 0 0 0 8.7369 1 15457 15457 4.897 3.4419 1 9040700 77143 725 51553 52659 89810 89810 0.03958627103043 YEIYEQLHHPF 11 Unmodified _YEIYEQLHHPF_ 0 0 0 REV__ENSG00000125107|ENST00000317147|CNOT1;REV__nc|ENSG00000125107|A5YKK6-4|CNOT1 REV__ENSG00000125107|ENST00000317147|CNOT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.5716552734375 3 492.569981 1474.68811 NaN NaN NaN NaN NaN NaN NaN 53.588 1 53.525 53.025 54.025 -0.063423 0 0 0 0.9385 1 29073 29073 1.4551 0.94916 1 + 77144 19478;29616 51554 52660 89811 89811 -0.03024161236362488 YEKALQISEE 10 Unmodified _YEKALQISEE_ 0 0 0 ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;ENSG00000011295|ENST00000261647|TTC19 ENST00000481107.1_1_17:15928260-15930833:+|nuORF ENST00000481107.1_1_17:15928260-15930833:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 605.3035278320312 2 605.303518 1208.59248 NaN NaN NaN NaN NaN NaN NaN 92.519 1 86.343 85.843 86.843 -6.1757 0 0 0 0.55063 1 61189 61189 23.79 0 1 77145 442 51555 52661 89812 89812 -0.0034693414722823945 YEKEEEFLTN 10 Unmodified _YEKEEEFLTN_ 0 0 0 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 ENSG00000108091|ENST00000263102|CCDC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2927856445312 2 651.298433 1300.58231 0.046617 3.0362E-05 -1.2428 -0.0008094 -1.1961 -0.00077904 651.2972806774851 49.085 0.98161 49.085 48.852 49.834 0 80 46 4 0 0 0 0.56348 1 27410 27410 13.042 0 1 14270000 77146 2545 51556 52662 89813 89813 -0.05595541872457943 YEKEETWNI 9 Unmodified _YEKEETWNI_ 0 0 0 REV__nc|ENSG00000116580|Q3T8J9-3|GON4L REV__nc|ENSG00000116580|Q3T8J9-3|GON4L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.7838745117188 2 606.282586 1210.55062 -0.12144 -7.3629E-05 -0.7216 -0.00043749 -0.84304 -0.00051112 606.7831411750121 64.009 0.54996 64.009 63.685 64.235 0 28 22 2 0 0 0 0.58466 1 35727 35727 2.3027 0 1 1012500 + 77147 19048 51557 52663 89814 89814 -0.04623489835762484 YEKGIMQKV 9 Unmodified _YEKGIMQKV_ 0 0 0 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000175832|ENST00000319349|ETV4;nc|ENSG00000175832|P43268-3|ETV4;ENST00000493831.1_1_7:13940353-13946084:-|nuORF;ENST00000443137.5_1_7:13935493-13947427:-|nuORF;nc|ENSG00000006468|P50549-4|ETV1;nc|ENSG00000006468|P50549-5|ETV1;nc|ENSG00000006468|P50549-6|ETV1;nc|ENSG00000006468|P50549-3|ETV1;nc|ENSG00000006468|P50549-2|ETV1;ENSG00000006468|ENST00000430479|ETV1;ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5 nc|ENSG00000175832|P43268-2|ETV4;ENSG00000244405|ENST00000306376|ETV5 nc|ENSG00000175832|P43268-2|ETV4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8662719726562 3 365.867082 1094.57942 NaN NaN NaN NaN NaN NaN NaN 3.9003 1 3.894 3.394 4.394 -0.0062969 0 0 0 0.67877 1 1979 1979 6.6304 0.43853 1 77148 8545;10729 51558 52664 89815 89815 0.03590956259677114 YEKHARWCRYW 11 Unmodified _YEKHARWCRYW_ 0 0 0 REV__ENSG00000066279|ENST00000367409|ASPM REV__ENSG00000066279|ENST00000367409|ASPM MULTI-MSMS AL20221201_MKP_PDAC_01 4 799.8797607421875 2 799.377694 1596.74084 0.63883 0.00051066 -1.9345 -0.0015464 -1.2956 -0.0010357 799.8775067707081 62.09 0.27779 55.915 55.76 56.038 -6.1757 21 15 2 0 0 0 0.59689 1 40006 40006 11.495 5.7629 1 24276000 + 77149 17400 51559 52665 89816 89816 -0.03366481654529707 YEKIVKKIR 9 Unmodified _YEKIVKKIR_ 0 0 0 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 ENSG00000134318|ENST00000315872|ROCK2 MSMS AL20221201_MKP_PDAC_01 4 588.8804321289062 2 588.876791 1175.73903 NaN NaN NaN NaN NaN NaN NaN 105.84 1 99.667 99.167 100.17 -6.1757 0 0 0 0.85798 1 70888 70888 0.52476 0 1 77150 4591 51560 52666 89817 89817 0.15818832599165944 YEKKDNFFI 9 Unmodified _YEKKDNFFI_ 0 0 0 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant;ENSG00000118160|ENST00000236877|SLC8A2 SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant SLC8A2|p.L769Pfs*49|1|0.23|ENSG00000118160|chr19:47432247-47432250|GCGA/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3050537109375 2 602.305864 1202.59717 0.43572 0.00026244 -1.702 -0.0010251 -1.2662 -0.00076266 602.3046397131907 64.915 0.32364 64.431 64.231 64.555 -0.48428 27 14 2 0 0 0 0.25681 1 35403 35403 19.257 3.1079 1 3028000 77151 3352 51561 52667 89818 89818 0.0039799478618078865 YEKLHTYF 8 Unmodified _YEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7738647460938 2 550.7742 1099.53385 -0.16574 -9.1285E-05 -1.2333 -0.0006793 -1.3991 -0.00077058 550.7736394640925 44.46 0.16516 44.144 44.059 44.224 -0.31585 16 12 2 0 0 0 0.071044 1 23720 23720 122.18 72.246 1 20546000 77152 4412 51562 52668 89819 89819 -0.011939459310497114 YEKLHTYF 8 Unmodified _YEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 550.773193359375 2 550.7742 1099.53385 NaN NaN NaN NaN NaN NaN NaN 49.209 1 43.813 43.313 44.313 -5.3961 0 0 0 5.6895E-11 1 30730 30730 142.08 83.401 1 77153 4412 51562 52668 89820 89820 -0.011939459310497114 YEKLPRHFLWY 11 Unmodified _YEKLPRHFLWY_ 0 0 0 REV__ENSG00000171017|ENST00000306708|LRRC8E REV__ENSG00000171017|ENST00000306708|LRRC8E MSMS AL20221201_MKP_PDAC_01 4 776.1561889648438 2 776.408986 1550.80342 NaN NaN NaN NaN NaN NaN NaN 95.549 1 89.373 88.873 89.873 -6.1757 0 0 0 0.93933 1 63289 63289 2.9952 1.5133 1 + 77154 22529 51563 52669 89821 89821 0.05004987685333617 YEKRNTHAAW 10 Unmodified _YEKRNTHAAW_ 0 0 0 REV__nc|ENSG00000080822|Q9NY35-3|CLDND1 REV__nc|ENSG00000080822|Q9NY35-3|CLDND1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.3140258789062 2 638.315086 1274.61562 -0.36749 -0.00023458 -0.70102 -0.00044747 -1.0685 -0.00068205 638.3146100866944 23.715 0.65092 23.715 23.448 24.099 0 127 32 5 0 0 0 0.65023 1 12081 12081 9.3831 1.2276 1 43598000 + 77155 17675 51564 52670 89822 89822 -0.01070450519273436 YEKSKGHY 8 Unmodified _YEKSKGHY_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2476806640625 2 506.248349 1010.48214 0.21814 0.00011043 0.12554 6.3552E-05 0.34368 0.00017399 506.24859384900515 46.691 0.23246 46.354 46.25 46.483 -0.33664 17 11 2 0 0 0 0.57045 1 25010 25010 28.487 3.0875 1 2780800 77156 9115 51565 52671 89823 89823 -0.022676896249549827 YELAHPPEEW 10 Unmodified _YELAHPPEEW_ 0 0 0 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-7|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.7891235351562 2 635.790578 1269.5666 0.2446 0.00015551 -3.7144 -0.0023616 -3.4699 -0.0022061 635.7891715596344 61.615 0.27567 61.582 61.435 61.711 -0.032787 45 13 5 0 0 0 0.27276 1 33598 33598 29.082 6.4235 1 20113000 77157 7871 51566 52672 89824 89824 -0.05739783598869508 YELAPSKLE 9 Unmodified _YELAPSKLE_ 0 0 0 ENST00000508091.1_1_4:71686576-71705043:-|nuORF;ENST00000505068.5_1_4:71691792-71705589:-|nuORF;ENSG00000132463|ENST00000254799|GRSF1 ENST00000508091.1_1_4:71686576-71705043:-|nuORF ENST00000508091.1_1_4:71686576-71705043:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2797241210938 2 525.279315 1048.54408 0.22168 0.00011645 -3.8969 -0.002047 -3.6752 -0.0019305 525.2769978554545 26.171 0.51794 23.22 22.941 23.459 -2.9511 62 30 3 0 0 0 0.07916 1 14481 14481 37.974 0 1 43162000 77158 4408 51567 52673 89825 89825 0.02174617003538515 YELAPSPL 8 Unmodified _YELAPSPL_ 0 0 0 REV__ENSG00000170604|ENST00000302165|IRF2BP1 REV__ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.4671630859375 1 889.466561 888.459284 -0.53431 -0.00047525 1.0511 0.00093492 0.51679 0.00045967 889.4674013925109 93.251 0.81514 87.076 86.671 87.486 -6.1757 99 56 2 0 0 0 0.24071 2 61508 61508;61769 63.563 0 1 34090000 + 77159 22495 51568 52674 89826;89827 89826 0.01059291257570294 YELCADTCS 9 Unmodified _YELCADTCS_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.6884765625 2 502.688618 1003.36268 0.20378 0.00010244 -1.9023 -0.00095624 -1.6985 -0.0008538 502.68754501885553 40.439 0.21458 40.439 40.276 40.491 0 21 10 3 0 0 0 0.5029 1 21718 21718 7.2892 0 1 3507400 77160 16604 51569 52675 89828 89828 -0.13886387356194518 YELEFRSR 8 Unmodified _YELEFRSR_ 0 0 0 REV__nc|ENSG00000116783|Q59H18-1|TNNI3K REV__nc|ENSG00000116783|Q59H18-1|TNNI3K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.1889038085938 3 367.189212 1098.54581 -0.26384 -9.6879E-05 0.68059 0.00024991 0.41675 0.00015303 367.18941671767686 33.276 0.31054 33.117 32.936 33.247 -0.15918 22 12 2 0 0 0 0.79887 1 17330 17330 5.2969 0 1 1739700 + 77161 29590 51570 52676 89829 89829 0.0004767081213685742 YELELNIQ 8 Unmodified _YELELNIQ_ 0 0 0 nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48;nc|ENSG00000090686|Q86UV5-4|USP48;nc|ENSG00000090686|Q86UV5-7|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 nc|ENSG00000090686|Q86UV5-2|USP48 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7650146484375 2 511.263665 1020.51278 0.37572 0.00019209 -0.48305 -0.00024696 -0.10733 -5.4873E-05 511.26355367025144 31.42 0.32382 31.42 31.276 31.6 0 52 15 5 0 0 0 0.80232 1 16445 16445 5.2307 0 1 14078000 77162 1567 51571 52677 89830 89830 0.003340439694284214 YELFRGTPL 9 Unmodified _YELFRGTPL_ 0 0 0 nc|ENSG00000133816|O94851-3|MICAL2;ENSG00000133816|ENST00000683283|MICAL2;nc|ENSG00000133816|O94851|MICAL2;nc|ENSG00000133816|O94851-2|MICAL2;ENST00000530691.5_1_11:12229562-12281716:+|nuORF;nc|ENSG00000133816|O94851-5|MICAL2;nc|ENSG00000133816|O94851-6|MICAL2;nc|ENSG00000133816|O94851-4|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 nc|ENSG00000133816|O94851-3|MICAL2 MSMS AL20221201_MKP_PDAC_01 4 365.8670043945312 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 15.13 1 12.603 12.103 13.103 -2.5273 0 0 0 0.67877 1 7737 7737 6.6304 1.7334 1 77163 4535 51572 52678 89831 89831 0.03254029477329823 YELGVVRKFQ 10 Unmodified _YELGVVRKFQ_ 0 0 0 nc|ENSG00000133256|P35913-3|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B nc|ENSG00000133256|P35913-3|PDE6B nc|ENSG00000133256|P35913-3|PDE6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5680541992188 3 413.567912 1237.68191 -0.20389 -8.4323E-05 -0.090182 -3.7296E-05 -0.29407 -0.00012162 413.56794042377766 56.429 0.20743 56.361 56.212 56.419 -0.068737 17 10 2 0 0 0 0.64183 1 30682 30682 8.9762 1.3673 1 5703800 77164 4501 51573 52679 89832 89832 0.07257365322811893 YELGVVRKFQ 10 Unmodified _YELGVVRKFQ_ 0 0 0 nc|ENSG00000133256|P35913-3|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B nc|ENSG00000133256|P35913-3|PDE6B nc|ENSG00000133256|P35913-3|PDE6B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 413.567912 1237.68191 -0.30896 -0.00012778 0.00432 1.7866E-06 -0.30464 -0.00012599 413.5678292093261 56.7 0.21374 56.215 56.136 56.349 -0.48554 -0.072966 5.1397E-05 NaN 8.9762 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 4334600 77165 4501 51573 52679 0.07257365322811893 YELHAREWP 9 Unmodified _YELHAREWP_ 0 0 0 ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 ENSG00000171435|ENST00000339824|KSR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.7918090820312 2 600.793455 1199.57236 -0.19726 -0.00011851 -1.7611 -0.001058 -1.9583 -0.0011765 600.7926171809369 70.181 0.32406 70.181 70.078 70.402 0 48 18 4 0 0 0 0.25681 2 39074 39074;39174 19.257 1.3304 1 3954600 77166 8097 51574 52680 89833;89834 89833 -0.019446402965286325 YELIAASYVA 10 Unmodified _YELIAASYVA_ 0 0 0 REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.28515625 2 550.28714 1098.55973 0.36529 0.00020102 -2.661 -0.0014643 -2.2957 -0.0012633 550.2854707347843 89.143 0.28365 89.143 88.975 89.259 0 18 13 2 0 0 0 0.63399 1 49316 49316 9.3831 0.78985 1 492110 + 77167 18477 51575 52681 89835 89835 0.01438903520556778 YELIAASYVA 10 Unmodified _YELIAASYVA_ 0 0 0 REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF REV__ENST00000511348.1_1_4:100870420-100870579:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 550.28714 1098.55973 0.36529 0.00020102 -2.661 -0.0014643 -2.2957 -0.0012633 550.2854707347843 89.143 0.28365 89.143 88.975 89.259 0 0 0 NaN 9.3831 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 492110 + 77168 18477 51575 52681 0.01438903520556778 YELISCKSFK 10 Unmodified _YELISCKSFK_ 0 0 0 REV__ENSG00000114948|ENST00000264377|ADAM23 REV__ENSG00000114948|ENST00000264377|ADAM23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.313720703125 2 609.315374 1216.6162 0.44462 0.00027092 -2.116 -0.0012893 -1.6714 -0.0010184 609.3137210320156 78.27 0.21712 78.323 78.177 78.394 0.052452 15 8 2 0 0 0 0.54684 1 43211 43211 13.906 2.2658 1 1962000 + 77169 18944 51576 52682 89836 89836 0.016552080855717577 YELLAEHL 8 Unmodified _YELLAEHL_ 0 0 0 REV__nc|ENSG00000173153|P11474-2|ESRRA REV__nc|ENSG00000173153|P11474-2|ESRRA MSMS AL20221201_MKP_PDAC_01 4 494.2610778808594 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 84.211 1 78.035 77.535 78.535 -6.1757 0 0 0 0.65904 1 55393 55393 30.225 7.0764 1 + 77170 22706 51577 52683 89837 89837 0.01350365177609092 YELLAEHL 8 Unmodified _YELLAEHL_ 0 0 0 REV__nc|ENSG00000173153|P11474-2|ESRRA REV__nc|ENSG00000173153|P11474-2|ESRRA MSMS AL20221201_MKP_PDAC_01 4 494.2609558105469 2 494.260925 986.507297 NaN NaN NaN NaN NaN NaN NaN 84.404 1 78.228 77.728 78.728 -6.1757 0 0 0 0.80403 1 55525 55525 23.148 1.4018 1 + 77171 22706 51577 52683 89838 89838 0.01350365177609092 YELLIYEF 8 Unmodified _YELLIYEF_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7550048828125 2 545.278783 1088.54301 0.24912 0.00013584 -1.0984 -0.00059892 -0.84925 -0.00046308 545.2785435496397 71.042 0.24536 70.565 70.459 70.705 -0.47736 15 10 2 0 0 0 8.7369 1 38929 38929 2.5775 0 1 725970 77172 2180 51578 52684 89839 89839 0.002284026346160317 YELPEDPKW 9 Unmodified _YELPEDPKW_ 0 0 0 ENST00000604236.5_1_10:123239373-123278228:-|nuORF;nc|ENSG00000066468|P21802-8|FGFR2;nc|ENSG00000066468|P21802-3|FGFR2;ENSG00000066468|ENST00000358487|FGFR2;nc|ENSG00000066468|P21802-18|FGFR2;nc|ENSG00000066468|P21802-5|FGFR2;nc|ENSG00000066468|P21802-6|FGFR2;nc|ENSG00000066468|P21802-17|FGFR2;nc|ENSG00000066468|P21802-2|FGFR2;nc|ENSG00000066468|P21802-16|FGFR2;nc|ENSG00000066468|P21802-23|FGFR2;nc|ENSG00000066468|P21802-21|FGFR2;nc|ENSG00000066468|P21802-15|FGFR2;nc|ENSG00000066468|P21802-20|FGFR2;nc|ENSG00000066468|P21802-4|FGFR2;nc|ENSG00000066468|P21802-22|FGFR2 ENST00000604236.5_1_10:123239373-123278228:-|nuORF ENST00000604236.5_1_10:123239373-123278228:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.281494140625 2 588.782222 1175.54989 0.094467 5.5621E-05 -2.7798 -0.0016367 -2.6853 -0.0015811 588.7809509286029 96.952 0.29427 96.952 96.79 97.085 0 25 15 2 0 0 0 0.59812 1 53547 53547 1.4819 0 1 616910 77173 939 51579 52685 89840 89840 -0.03086284484834323 YELSTMNMVL 10 Unmodified _YELSTMNMVL_ 0 0 0 ENST00000396987.7_1_8:41456031-41456094:+|nuORF ENST00000396987.7_1_8:41456031-41456094:+|nuORF ENST00000396987.7_1_8:41456031-41456094:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.7863159179688 2 600.785592 1199.55663 0.51612 0.00031008 0.29447 0.00017692 0.81059 0.00048699 600.7856426130262 85.704 0.41929 85.203 85.1 85.52 -0.5015 24 18 2 0 0 0 0.66569 1 46919 46919 6.7232 0.99131 1 593250 77174 12813 51580 52686 89841 89841 -0.03516430920080893 YEMLAAFVFLF 11 Unmodified _YEMLAAFVFLF_ 0 0 0 REV__ENSG00000182256|ENST00000615808|GABRG3 REV__ENSG00000182256|ENST00000615808|GABRG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.8434448242188 2 675.843768 1349.67298 0.34923 0.00023603 -0.19293 -0.00013039 0.1563 0.00010564 675.8434887345712 57.293 0.35559 57.293 57.135 57.49 0 40 15 3 0 0 0 0.63851 1 31936 31936 9.3831 0 1 6085100 + 77175 23256 51581 52687 89842 89842 0.012132556420965557 YEMLAAFVFLF 11 Unmodified _YEMLAAFVFLF_ 0 0 0 REV__ENSG00000182256|ENST00000615808|GABRG3 REV__ENSG00000182256|ENST00000615808|GABRG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.769775390625 2 675.843768 1349.67298 0.34923 0.00023603 -0.19293 -0.00013039 0.1563 0.00010564 675.8434887345712 57.293 0.35559 57.293 57.135 57.49 0 40 15 3 0 0 0 0.29414 1 31951 31951 6.2058 0 1 6085100 + 77176 23256 51581 52687 89843 89843 0.012132556420965557 YEMLAAFVFLF 11 Unmodified _YEMLAAFVFLF_ 0 0 0 REV__ENSG00000182256|ENST00000615808|GABRG3 REV__ENSG00000182256|ENST00000615808|GABRG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 675.7683715820312 2 675.843768 1349.67298 0.33353 0.00022542 -0.21111 -0.00014267 0.12243 8.2743E-05 675.84399714091 57.904 0.33105 57.414 57.288 57.619 -0.48974 36 15 3 0 0 0 0.30452 1 31580 31580 1.3295 0 1 3661800 + 77177 23256 51581 52687 89844 89844 0.012132556420965557 YEMSTGDISL 10 Unmodified _YEMSTGDISL_ 0 0 0 REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1 REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2503662109375 2 558.249897 1114.48524 NaN NaN NaN NaN NaN NaN NaN 71.236 1 71.236 70.736 71.736 0 0 0 0 0.92825 1 39681 39681 6.7232 1.4925 1 + 77178 21302 51582 52688 89845 89845 -0.067422273531065 YEMWHNYPF 9 Unmodified _YEMWHNYPF_ 0 0 0 ENSG00000171596|ENST00000305141|NMUR1 ENSG00000171596|ENST00000305141|NMUR1 ENSG00000171596|ENST00000305141|NMUR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.768310546875 2 643.768591 1285.52263 0.29591 0.0001905 -0.38203 -0.00024594 -0.086112 -5.5437E-05 643.7682468467024 87.348 0.26501 86.844 86.681 86.946 -0.50423 16 10 2 0 0 0 0.59218 1 47779 47779 1.8442 0.36234 1 412680 77179 8119 51583 52689 89846 89846 -0.10871091296849045 YENEVALR 8 Unmodified _YENEVALR_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2526245117188 2 497.253631 992.49271 -0.53679 -0.00026692 0.14332 7.1268E-05 -0.39347 -0.00019565 497.25340571013055 27.842 0.20403 27.842 27.741 27.945 0 15 9 2 0 0 0 0.27285 1 14365 14365 58.679 20.705 1 1309200 + 77180 169 51584 52690 89847 89847 -0.0038370697051277602 YENEVALR 8 Unmodified _YENEVALR_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2534484863281 2 497.253631 992.49271 0.52698 0.00026204 0.30018 0.00014927 0.82716 0.00041131 497.2535951504401 27.823 0.2152 27.776 27.66 27.875 -0.046408 15 9 2 0 0 0 0.07965 1 14347 14347 107.19 29.038 1 8362100 + 77181 169 51584 52690 89848 89848 -0.0038370697051277602 YENEVALRQ 9 Unmodified _YENEVALRQ_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.282470703125 2 561.28292 1120.55129 -0.34507 -0.00019368 -0.4091 -0.00022962 -0.75416 -0.0004233 561.2827336815129 27.162 0.26147 27.162 27.012 27.273 0 29 12 3 0 0 0 0.0039711 1 13956 13956 121.53 71.98 1 10337000 + 77182 169 51585 52691 89849 89849 -0.004166503960504997 YENKDQLDSTF 11 Unmodified _YENKDQLDSTF_ 0 0 0 REV__ENST00000551200.5_1_12:102471044-102512308:-|nuORF REV__ENST00000551200.5_1_12:102471044-102512308:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.8734741210938 3 453.873618 1358.59903 -0.34346 -0.00015589 0.23685 0.0001075 -0.10661 -4.8387E-05 453.87381072188685 32.821 0.16414 32.662 32.546 32.71 -0.15918 9 6 2 0 0 0 0.73992 1 17123 17123 0.50596 0 1 724800 + 77183 17563 51586 52692 89850 89850 -0.06593040986535925 YENKKIASTTH 11 Unmodified _YENKKIASTTH_ 0 0 0 ENST00000519677.1_1_5:78296041-78296494:-|nuORF ENST00000519677.1_1_5:78296041-78296494:-|nuORF ENST00000519677.1_1_5:78296041-78296494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.3372192382812 2 646.335684 1290.65681 2.6238 0.0016958 0.72649 0.00046956 3.3503 0.0021654 646.3359265941076 96.774 0.45454 96.767 96.445 96.9 -0.007019 37 16 3 0 0 0 0.61059 1 53680 53680 10.8 1.2555 1 3826100 77184 14712 51587 52693 89851 89851 0.023112657295769168 YENPSSYDST 10 Unmodified _YENPSSYDST_ 0 0 0 ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000156650|Q8WYB5-3|KAT6B ENSG00000083168|ENST00000265713|KAT6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7306518554688 2 581.730383 1161.44621 0.50473 0.00029362 -0.13262 -7.7146E-05 0.37212 0.00021647 581.7306925527788 50.855 0.27195 50.855 50.724 50.996 0 46 16 4 0 0 0 0.54684 1 28016 28016 13.906 0 1 12154000 77185 1360;6472 51588 52694 89852 89852 -0.12805236383155716 YENRPLLIK 9 Unmodified _YENRPLLIK_ 0 0 0 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 ENSG00000100558|ENST00000216446|PLEK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.5611572265625 3 382.560758 1144.66044 0.30049 0.00011495 -0.64861 -0.00024813 -0.34812 -0.00013318 382.560533377121 40.112 0.69207 39.815 39.548 40.24 -0.29716 124 32 6 0 0 0 0.15882 1 21103 21103 27.223 2.3417 1 777260000 77186 1842 51589 52695 89853 89853 0.0938998029407685 YENSHGSSECI 11 Unmodified _YENSHGSSECI_ 0 0 0 nc|ENSG00000088756|Q9P2N2-5|ARHGAP28;ENSG00000088756|ENST00000383472|ARHGAP28 nc|ENSG00000088756|Q9P2N2-5|ARHGAP28 nc|ENSG00000088756|Q9P2N2-5|ARHGAP28 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 612.812744140625 2 613.243135 1224.47172 0.92171 0.00056523 -2.2211 -0.001362 -1.2993 -0.00079682 613.2418429148101 64.882 0.39818 58.706 58.47 58.868 -6.1757 30 21 2 0 0 0 0.29414 1 42180 42180 6.2058 2.2614 1 16341000 77187 1494 51590 52696 89854 89854 -0.13154085132327964 YENWFYTR 8 Unmodified _YENWFYTR_ 0 0 0 ENST00000457967.1_1_1:113711666-113711915:+|nuORF ENST00000457967.1_1_1:113711666-113711915:+|nuORF ENST00000457967.1_1_1:113711666-113711915:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2713623046875 2 589.766906 1177.51926 0.087166 5.1407E-05 3.1119 0.0018353 3.1991 0.0018867 589.7685063579349 76.268 0.24593 76.268 76.15 76.396 0 14 9 2 0 0 0 0.80722 1 42403 42403 2.3027 0.24298 1 652710 77188 13620 51591 52697 89855 89855 -0.062400180792110405 YENYRSRK 8 Unmodified _YENYRSRK_ 0 0 0 nc|ENSG00000122545|Q16181-2|SEPTIN7;ENSG00000122545|ENST00000350320|SEPTIN7;ENST00000469999.1_1_7:152065296-152065533:+|nuORF;ENST00000492940.1_1_7:35930257-35938044:+|nuORF;ENST00000420492.2_1_9:101369884-101370217:+|nuORF;ENST00000425198.1_1_7:35872473-35938044:+|nuORF nc|ENSG00000122545|Q16181-2|SEPTIN7 nc|ENSG00000122545|Q16181-2|SEPTIN7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.7990112304688 2 558.283254 1114.55196 NaN NaN NaN NaN NaN NaN NaN 30.878 1 30.908 30.408 31.408 0.030106 0 0 0 0.97444 1 16158 16158 2.5775 0 1 77189 3644 51592 52698 89856 89856 -0.000738109563371836 YEPAMARTCF 10 Unmodified _YEPAMARTCF_ 0 0 0 ENST00000529978.1_1_8:12870155-12879550:+|nuORF;ENSG00000250305|ENST00000524591|TRMT9B ENST00000529978.1_1_8:12870155-12879550:+|nuORF ENST00000529978.1_1_8:12870155-12879550:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8445434570312 3 396.84406 1187.51035 0.2987 0.00011854 0.31947 0.00012678 0.61816 0.00024531 396.84413550203647 47.402 0.2252 47.402 47.269 47.494 0 19 9 3 0 0 0 0.71042 1 25968 25968 1.7423 0.54893 1 1301300 77190 10750 51593 52699 89857 89857 -0.07590451031524026 YEPDEVDGDM 10 Unmodified _YEPDEVDGDM_ 0 0 0 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 REV__nc|ENSG00000177200|Q3L8U1-2|CHD9 MSMS AL20221201_MKP_PDAC_01 4 390.4810180664062 3 390.481621 1168.42303 NaN NaN NaN NaN NaN NaN NaN 14.553 1 12.05 11.55 12.55 -2.5029 0 0 0 0.98857 1 7399 7399 1.9064 0.25375 1 + 77191 22971 51594 52700 89858 89858 -0.15443998492105493 YEPDWAVIST 10 Unmodified _YEPDWAVIST_ 0 0 0 nc|ENSG00000104946|Q9HA65-3|TBC1D17;nc|ENSG00000104946|Q9HA65-2|TBC1D17;ENSG00000104946|ENST00000221543|TBC1D17;ENST00000596243.5_1_19:50382536-50391878:+|nuORF nc|ENSG00000104946|Q9HA65-3|TBC1D17 nc|ENSG00000104946|Q9HA65-3|TBC1D17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.1866149902344 3 394.188878 1179.5448 -0.39784 -0.00015683 -1.7687 -0.00069722 -2.1666 -0.00085404 394.52287446942717 22.194 0.25924 22.194 22.065 22.324 0 20 12 2 0 0 0 0.71276 1 11320 11320 0.62683 0 1 967020 77192 2261 51595 52701 89859 89859 -0.03778588347427103 YEPFGPDECT 10 Unmodified _YEPFGPDECT_ 0 0 0 ENSG00000117069|ENST00000477717|ST6GALNAC5 ENSG00000117069|ENST00000477717|ST6GALNAC5 ENSG00000117069|ENST00000477717|ST6GALNAC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2800903320312 2 579.226422 1156.43829 0.34443 0.0001995 0.35132 0.00020349 0.69575 0.000403 579.22641822462 59.719 0.30371 59.228 59.069 59.372 -0.49079 28 14 3 0 0 0 0.23634 1 32479 32479 6.7232 0 1 2394800 77193 3279 51596 52702 89860 89860 -0.1336708690425894 YEPFLFNFL 9 Unmodified _YEPFLFNFL_ 0 0 0 ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI ENST00000260585.11_1_2:26569100-26611935:+|nuORF ENST00000260585.11_1_2:26569100-26611935:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.299560546875 2 595.30005 1188.58555 0.4747 0.00028259 -3.1086 -0.0018505 -2.6339 -0.001568 595.2982066787997 94.936 0.23534 94.567 94.499 94.735 -0.36815 18 12 2 0 0 0 0.5029 1 51856 51856 7.2892 0 1 404060 77194 5002 51597 52703 89861 89861 -0.0012020223714444 YEPFRFTMRR 10 Unmodified _YEPFRFTMRR_ 0 0 0 REV__ENST00000607391.5_1_6:159462930-159463077:+|nuORF REV__ENST00000607391.5_1_6:159462930-159463077:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 351.431640625 4 351.43167 1401.69757 -0.066214 -2.327E-05 0.59837 0.00021029 0.53216 0.00018702 351.6825759115658 16.924 0.21912 16.929 16.772 16.991 0.0050564 37 22 2 0 0 0 0.72482 1 8466 8466 0.13989 0 1 634760 + 77195 29314 51598 52704 89862 89862 0.012793285681709676 YEPGQDCHGF 10 Unmodified _YEPGQDCHGF_ 0 0 0 nc|ENSG00000137760|Q96BT7-2|ALKBH8 nc|ENSG00000137760|Q96BT7-2|ALKBH8 nc|ENSG00000137760|Q96BT7-2|ALKBH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.724609375 2 576.724381 1151.43421 0.85445 0.00049278 0.83266 0.00048021 1.6871 0.000973 576.7247159388016 63.29 0.25983 57.115 57.019 57.279 -6.1757 21 14 2 0 0 0 0.6606 1 40962 40962 7.2892 1.5574 1 10009000 77196 16221 51599 52705 89863 89863 -0.13545131607315852 YEPLPPSLPA 10 Unmodified _YEPLPPSLPA_ 0 0 0 ENSG00000177272|ENST00000369769|KCNA3 ENSG00000177272|ENST00000369769|KCNA3 ENSG00000177272|ENST00000369769|KCNA3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2893676757812 2 542.289682 1082.56481 0.22315 0.00012101 0.20874 0.0001132 0.43188 0.00023421 542.2895453736618 81.358 0.2896 81.358 81.176 81.465 0 15 12 2 0 0 0 0.67033 1 45115 45115 6.2058 1.8765 1 539700 77197 8670 51600 52706 89864 89864 0.026832073831883463 YEPLPPSLPA 10 Unmodified _YEPLPPSLPA_ 0 0 0 ENSG00000177272|ENST00000369769|KCNA3 ENSG00000177272|ENST00000369769|KCNA3 ENSG00000177272|ENST00000369769|KCNA3 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 542.289682 1082.56481 0.50387 0.00027324 -0.18414 -9.9859E-05 0.31972 0.00017338 542.7911127002426 81.864 0.2798 81.369 81.163 81.443 -0.4952 0.0057567 -0.00018992 NaN 6.2058 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 363100 77198 8670 51600 52706 0.026832073831883463 YEPPTCDIPD 10 Unmodified _YEPPTCDIPD_ 0 0 0 REV__nc|ENSG00000132361|O75153|CLUH REV__nc|ENSG00000132361|O75153|CLUH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2418212890625 2 575.242072 1148.46959 0.67907 0.00039063 -1.0589 -0.00060913 -0.37984 -0.0002185 575.2415302585912 59.858 0.41895 59.858 59.627 60.046 0 59 19 4 0 0 0 0.52888 1 33307 33307 14.838 2.3067 1 27277000 + 77199 19846 51601 52707 89865 89865 -0.09870513870168907 YEPQELKPF 9 Unmodified _YEPQELKPF_ 0 0 0 ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;TBCD-FOXK2|3|fusion;nc|ENSG00000141556|Q9BTW9-5|TBCD;ENST00000574801.5_1_17:80822167-80863832:+|nuORF;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD;TBCD-FOXK2|1|fusion ENSG00000141556|ENST00000355528|TBCD MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2962036132812 2 575.792589 1149.57063 1.2855 0.00074021 -1.2339 -0.00071046 0.051659 2.9745E-05 575.7916034738324 97.095 0.82217 90.919 90.491 91.313 -6.1757 200 47 6 0 0 0 0.41742 1 64155 64155 11.64 0 1 4126899999.9999995 77200 5350;30184 51602 52708 89866 89866 0.0018230589485028759 YEPRRFFA 8 Unmodified _YEPRRFFA_ 0 0 0 REV__ENST00000469416.1_1_1:40922809-40928135:+|nuORF REV__ENST00000469416.1_1_1:40922809-40928135:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2800903320312 2 543.279983 1084.54541 NaN NaN NaN NaN NaN NaN NaN 96.386 1 96.082 95.582 96.582 -0.30472 0 0 0 0.97444 1 52638 52638 0.79363 0 1 + 77201 27465 51603 52709 89867 89867 0.006522958829464187 YEPTGCTTK 9 Unmodified _YEPTGCTTK_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.2263793945312 2 500.226225 998.437897 0.2877 0.00014392 -0.51118 -0.00025571 -0.22347 -0.00011179 500.2259986445509 64.935 0.38321 64.935 64.786 65.169 0 53 17 4 0 0 0 0.34999 1 36196 36196 14.838 2.3067 1 27552000 + 77202 21501 51604 52710 89868 89868 -0.06138461833461406 YEPTGCTTK 9 Unmodified _YEPTGCTTK_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2267456054688 2 500.226225 998.437897 -0.042463 -2.1241E-05 0.25156 0.00012584 0.2091 0.0001046 500.22624087713115 65.452 0.37828 64.968 64.791 65.169 -0.48428 44 17 3 0 0 0 0.45045 1 35801 35801 10.074 2.1638 1 12648000 + 77203 21501 51604 52710 89869 89869 -0.06138461833461406 YEPTGCTTK 9 Unmodified _YEPTGCTTK_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 500.226225 998.437897 -0.042463 -2.1241E-05 0.25156 0.00012584 0.2091 0.0001046 500.22624087713115 65.452 0.37828 64.968 64.791 65.169 -0.48428 -0.022058 0.00029147 NaN 14.838 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 12648000 + 77204 21501 51604 52710 -0.06138461833461406 YEPTGCTTK 9 Unmodified _YEPTGCTTK_ 0 0 0 REV__ENSG00000159792|ENST00000291041|PSKH1 REV__ENSG00000159792|ENST00000291041|PSKH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.226225 998.437897 0.58811 0.00029419 1.0236 0.00051201 1.6117 0.0008062 500.2267954880384 65.067 0.18246 65.067 64.935 65.118 7.6294E-06 0.076993 0.0010638 NaN 14.838 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1767500 + 77205 21501 51604 52710 -0.06138461833461406 YEPTKADSY 9 Unmodified _YEPTKADSY_ 0 0 0 ENSG00000006451|ENST00000005257|RALA;ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB ENSG00000006451|ENST00000005257|RALA ENSG00000006451|ENST00000005257|RALA MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.244140625 2 537.242929 1072.47131 0.86069 0.0004624 0.67236 0.00036122 1.5331 0.00082362 537.2432323381043 40.705 0.25903 36.176 36.016 36.275 -4.5294 22 15 2 0 0 0 0.28023 1 24338 24338 18.146 3.3081 1 5166400 77206 335 51605 52711 89870 89870 -0.06203136789895325 YEPVICQRP 9 Unmodified _YEPVICQRP_ 0 0 0 nc|ENSG00000170456|Q6ZUT9-4|DENND5B;ENSG00000170456|ENST00000389082|DENND5B;nc|ENSG00000170456|Q6ZUT9-2|DENND5B;nc|ENSG00000170456|Q6ZUT9-3|DENND5B nc|ENSG00000170456|Q6ZUT9-4|DENND5B nc|ENSG00000170456|Q6ZUT9-4|DENND5B MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7791748046875 2 552.778959 1103.54336 1.3225 0.00073107 -0.65026 -0.00035945 0.67229 0.00037163 552.7782851508306 64.493 0.73776 58.317 57.996 58.734 -6.1757 78 40 3 0 0 0 0.30562 1 41990 41990 16.942 1.0951 1 29055000 77207 7987 51606 52712 89871 89871 -0.00426500917183148 YEPVPCGAQQI 11 Unmodified _YEPVPCGAQQI_ 0 0 0 REV__ENSG00000278053|ENST00000617633|DDX52 REV__ENSG00000278053|ENST00000617633|DDX52 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2908935546875 2 602.786981 1203.55941 0.33008 0.00019897 2.4242 0.0014613 2.7542 0.0016602 602.7887960150196 68.672 0.23382 68.191 68.118 68.352 -0.48071 20 10 3 0 0 0 0.65108 1 37576 37576 8.7454 0.83525 1 1535400 + 77208 24667 51607 52713 89872 89872 -0.03422839470931649 YEPVQGTGRKL 11 Unmodified _YEPVQGTGRKL_ 0 0 0 REV__nc|ENSG00000187391|Q86UL8-2|MAGI2 REV__nc|ENSG00000187391|Q86UL8-2|MAGI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.5623779296875 3 416.562938 1246.66699 -0.58841 -0.00024511 0.73685 0.00030694 0.14844 6.1836E-05 416.5632044206651 18.619 0.16278 18.619 18.529 18.692 0 24 15 2 0 0 0 0.73237 1 9267 9267 1.2148 0 1 1217600 + 77209 23633 51608 52714 89873 89873 0.053518734548106295 YEPYAQYDYFA 11 Unmodified _YEPYAQYDYFA_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.5367431640625 3 477.203076 1428.5874 -0.19435 -9.2744E-05 -0.15635 -7.461E-05 -0.3507 -0.00016735 477.20285443384785 24.354 0.33675 24.354 24.174 24.51 0 45 20 3 0 0 0 0.7326 1 12390 12390 1.2148 0.588 1 3817300 + 77210 22709 51609 52715 89874 89874 -0.10975238009837085 YEPYAQYDYFA 11 Unmodified _YEPYAQYDYFA_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.5367431640625 3 477.203076 1428.5874 -0.19435 -9.2744E-05 -0.15635 -7.461E-05 -0.3507 -0.00016735 477.20285443384785 24.354 0.33675 24.354 24.174 24.51 0 45 20 3 0 0 0 0.30587 1 12390 12390 1.2148 0.588 1 3817300 + 77211 22709 51609 52715 89875 89875 -0.10975238009837085 YEPYAQYDYFA 11 Unmodified _YEPYAQYDYFA_ 0 0 0 REV__nc|ENSG00000173193|Q460N5-3|PARP14 REV__nc|ENSG00000173193|Q460N5-3|PARP14 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 477.203076 1428.5874 0.23749 0.00011333 0.86327 0.00041195 1.1008 0.00052529 477.5380903380591 24.469 0.099333 24.467 24.379 24.478 -0.0016766 0.056486 0.0013673 NaN 1.2148 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 2064600 + 77212 22709 51609 52715 -0.10975238009837085 YEQATALA 8 Unmodified _YEQATALA_ 0 0 0 REV__ENSG00000138593|ENST00000559471|SECISBP2L REV__ENSG00000138593|ENST00000559471|SECISBP2L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.715576171875 2 433.71635 865.418148 NaN NaN NaN NaN NaN NaN NaN 17.679 1 17.679 17.179 18.179 0 0 0 0 0.97444 1 8730 8730 2.3027 0 1 + 77213 20338 51610 52716 89876 89876 -0.019944697819255452 YEQEDEDIY 9 Unmodified _YEQEDEDIY_ 0 0 0 REV__ENST00000442031.1_1_X:51665090-51665543:-|nuORF REV__ENST00000442031.1_1_X:51665090-51665543:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2392578125 2 602.238041 1202.46153 0.90588 0.00054556 -0.24726 -0.00014891 0.65862 0.00039664 602.2379352520127 80.388 0.30336 79.898 79.779 80.083 -0.48932 18 11 2 0 0 0 0.56345 1 44023 44023 3.5965 0 1 607830 + 77214 27096 51611 52717 89877 89877 -0.13160369585943954 YEQEEVYLY 9 Unmodified _YEQEEVYLY_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST REV__nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.2734375 2 618.276969 1234.53938 -0.24413 -0.00015094 -3.6219 -0.0022393 -3.866 -0.0023903 618.274280228877 28.803 0.31868 28.803 28.704 29.022 0 21 15 2 0 0 0 0.46501 1 14896 14896 9.3831 1.2276 1 1716000 + 77215 29707 51612 52718 89878 89878 -0.06850311929906638 YEQFECESL 9 Unmodified _YEQFECESL_ 0 0 0 REV__ENSG00000253729|ENST00000314191|PRKDC REV__ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.7335205078125 2 574.234247 1146.45394 0.49889 0.00028648 -2.8045 -0.0016104 -2.3056 -0.0013239 574.2326080241909 61.309 0.31554 61.309 61.095 61.411 0 23 13 2 0 0 0 0.58865 1 34136 34136 2.0598 0 1 720100 + 77216 24515 51613 52719 89879 89879 -0.11342800387205898 YEQHECHF 8 Unmodified _YEQHECHF_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.D677Vfs*2|1|0.25|ENSG00000165029|chr9:104828985-104829001|CCAGAGGATGCTGTTGT/-|frameshift_variant ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7158203125 2 546.713816 1091.41308 0.28093 0.00015359 0.76152 0.00041633 1.0424 0.00056992 546.7144164750314 91.133 0.41906 91.133 90.906 91.325 0 115 23 7 0 0 0 0.80975 1 50319 50319 0.79363 0 1 9291200 77217 7281 51614 52720 89880 89880 -0.1289709691616281 YEQHECHF 8 Unmodified _YEQHECHF_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.D677Vfs*2|1|0.25|ENSG00000165029|chr9:104828985-104829001|CCAGAGGATGCTGTTGT/-|frameshift_variant ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7144165039062 2 546.713816 1091.41308 0.16713 9.1373E-05 0.68943 0.00037692 0.85656 0.00046829 546.7143331848491 65.171 0.34248 64.687 64.511 64.854 -0.48428 58 15 5 0 0 0 0.80624 1 35500 35500 2.8892 0 1 14279000 77218 7281 51614 52720 89881 89881 -0.1289709691616281 YEQHECHF 8 Unmodified _YEQHECHF_ 0 0 0 ENSG00000165029|ENST00000374736|ABCA1;ABCA1|p.D677Vfs*2|1|0.25|ENSG00000165029|chr9:104828985-104829001|CCAGAGGATGCTGTTGT/-|frameshift_variant ENSG00000165029|ENST00000374736|ABCA1 ENSG00000165029|ENST00000374736|ABCA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.714599609375 2 546.713816 1091.41308 1.0158 0.00055535 0.62548 0.00034196 1.6413 0.00089731 546.7141252375898 71.743 0.39597 65.567 65.385 65.781 -6.1757 63 21 4 0 0 0 0.79669 1 46931 46931 8.5933 3.3626 1 123360000 77219 7281 51614 52720 89882 89882 -0.1289709691616281 YEQLTAACLE 10 Unmodified _YEQLTAACLE_ 0 0 0 REV__ENSG00000178607|ENST00000433197|ERN1 REV__ENSG00000178607|ENST00000433197|ERN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.7662963867188 2 570.765714 1139.51688 0.3544 0.00020228 1.0628 0.00060662 1.4172 0.0008089 570.7660833623142 65.791 0.39001 65.791 65.624 66.014 0 36 19 2 0 0 0 0.60623 1 36751 36751 10.824 0.64053 1 3644900 + 77220 23054 51615 52721 89883 89883 -0.04730234599196592 YEQNQCSV 8 Unmodified _YEQNQCSV_ 0 0 0 REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF REV__ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7003173828125 2 485.700374 969.386196 -0.4449 -0.00021609 0.53365 0.00025919 0.088748 4.3105E-05 485.7005287235751 27.179 0.24007 27.179 27.033 27.273 0 21 11 3 0 0 0 0.79669 1 13975 13975 8.5933 1.8701 1 2667000 + 77221 28925 51616 52722 89884 89884 -0.09972205527355982 YEQPIPDDL 9 Unmodified _YEQPIPDDL_ 0 0 0 REV__nc|ENSG00000160185|P57075-2|UBASH3A REV__nc|ENSG00000160185|P57075-2|UBASH3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7908935546875 2 545.258579 1088.50261 0.60332 0.00032897 -0.19876 -0.00010838 0.40456 0.00022059 545.2576835086691 43.046 0.21236 43.046 42.909 43.121 0 17 10 2 0 0 0 0.18882 1 23291 23291 15.847 3.3156 1 6666900 + 77222 21518 51617 52723 89885 89885 -0.038105637558146555 YEQQLCCCL 9 Unmodified _YEQQLCCCL_ 0 0 0 REV__ENSG00000152779|ENST00000371790|SLC16A12 REV__ENSG00000152779|ENST00000371790|SLC16A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.721923828125 2 551.721938 1101.42932 0.39359 0.00021715 -3.1464 -0.0017359 -2.7528 -0.0015188 551.7215108507265 64.064 0.88315 64.064 63.636 64.519 0 76 31 3 0 0 0 0.30562 1 35759 35759 16.942 3.4344 1 6201300 + 77223 21135 51618 52724 89886 89886 -0.11733475065966559 YEQSLWEAAF 10 Unmodified _YEQSLWEAAF_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8131103515625 2 622.285128 1242.5557 0.76208 0.00047423 -0.29396 -0.00018292 0.46813 0.00029131 622.2850397729738 68.456 0.22459 68.481 68.357 68.582 0.025154 16 10 2 0 0 0 0.22149 1 37604 37604 10.074 2.1638 1 767570 + 77224 22751 51619 52725 89887 89887 -0.05587185973149644 YEQVHMGF 8 Unmodified _YEQVHMGF_ 0 0 0 REV__ENSG00000100393|ENST00000263253|EP300;REV__nc|ENSG00000005339|Q92793-2|CREBBP REV__ENSG00000100393|ENST00000263253|EP300 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7249450683594 2 505.723652 1009.43275 0.41712 0.00021095 -3.1911 -0.0016138 -2.774 -0.0014029 505.72231660896676 69.79 0.37404 69.79 69.489 69.863 0 26 17 2 0 0 0 0.77907 1 38845 38845 10.183 4.423 1 1440100 + 77225 18059;16966 51620 52726 89888 89888 -0.07158720905397331 YEQWWVQK 8 Unmodified _YEQWWVQK_ 0 0 0 REV__ENSG00000153237|ENST00000283233|CCDC148 REV__ENSG00000153237|ENST00000283233|CCDC148 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.5255432128906 3 389.525825 1165.55564 NaN NaN NaN NaN NaN NaN NaN 59.105 1 59.105 58.605 59.605 0 0 0 0 0.97444 1 32924 32924 0.40072 0 1 + 77226 21163 51621 52727 89889 89889 -0.020511411825054893 YEQYLWAF 8 Unmodified _YEQYLWAF_ 0 0 0 REV__nc|ENSG00000125755|Q92797-2|SYMPK REV__nc|ENSG00000125755|Q92797-2|SYMPK MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2356567382812 2 560.260925 1118.5073 0.24515 0.00013735 -1.4812 -0.00082986 -1.2361 -0.00069251 560.2601069600964 48.191 0.2386 48.191 48.092 48.33 0 28 11 3 0 0 0 8.7369 1 26496 26496 30.225 13.283 1 4781600 + 77227 19513 51622 52728 89890 89890 -0.047216348223855675 YEQYSEAPM 9 Unmodified _YEQYSEAPM_ 0 0 0 REV__nc|ENSG00000160185|P57075-2|UBASH3A REV__nc|ENSG00000160185|P57075-2|UBASH3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.229248046875 2 559.228965 1116.44338 0.57724 0.00032281 -0.85457 -0.0004779 -0.27733 -0.00015509 559.2287340127893 66.504 0.63066 66.504 66.281 66.912 0 74 23 5 0 0 0 0.37804 1 37131 37131 13.508 5.5977 1 31706000 + 77228 21518 51623 52729 89891 89891 -0.11018783041663482 YEQYSEAPM 9 Unmodified _YEQYSEAPM_ 0 0 0 REV__nc|ENSG00000160185|P57075-2|UBASH3A REV__nc|ENSG00000160185|P57075-2|UBASH3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.228965 1116.44338 0.54687 0.00030583 -1.3489 -0.00075433 -0.802 -0.0004485 559.2280802251005 67.122 0.235 66.639 66.46 66.695 -0.48249 0.067272 -0.00044367 NaN 13.508 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1991900 + 77229 21518 51623 52729 -0.11018783041663482 YERALHWYAKY 11 Unmodified _YERALHWYAKY_ 0 0 0 ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C ENSG00000171488|ENST00000370454|LRRC8C MULTI-MSMS AL20221201_MKP_PDAC_01 4 750.37451171875 2 750.375143 1498.73573 0.99218 0.00074451 0.41599 0.00031215 1.4082 0.0010567 750.374502189844 80.004 0.19764 73.829 73.762 73.96 -6.1757 13 11 2 0 0 0 0.63851 1 52493 52493 9.3831 0 1 10345000 77230 8107 51624 52730 89892 89892 0.006315377545206502 YERFDVYFY 9 Unmodified _YERFDVYFY_ 0 0 0 REV__nc|ENSG00000122025|P36888-2|FLT3 REV__nc|ENSG00000122025|P36888-2|FLT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.297607421875 2 651.295496 1300.57644 NaN NaN NaN NaN NaN NaN NaN 55.126 1 55.126 54.626 55.626 0 0 0 0 0.82739 1 30617 30617 4.3292 0.38484 1 + 77231 19324 51625 52731 89893 89893 -0.06182595593463702 YERFDVYFY 9 Unmodified _YERFDVYFY_ 0 0 0 REV__nc|ENSG00000122025|P36888-2|FLT3 REV__nc|ENSG00000122025|P36888-2|FLT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.2954711914062 2 651.295496 1300.57644 0.19121 0.00012453 -0.4571 -0.00029771 -0.26589 -0.00017317 651.7964988090788 54.944 1.0892 54.466 53.937 55.026 -0.47798 70 53 2 0 0 0 0.55144 1 29956 29956 4.3292 0 1 2155900 + 77232 19324 51625 52731 89894 89894 -0.06182595593463702 YERFDVYFY 9 Unmodified _YERFDVYFY_ 0 0 0 REV__nc|ENSG00000122025|P36888-2|FLT3 REV__nc|ENSG00000122025|P36888-2|FLT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.2977294921875 2 651.295496 1300.57644 NaN NaN NaN NaN NaN NaN NaN 18.928 1 18.951 18.451 19.451 0.023106 0 0 0 0.85737 1 9522 9522 0.6015 0 1 + 77233 19324 51625 52731 89895 89895 -0.06182595593463702 YERFLEENL 9 Unmodified _YERFLEENL_ 0 0 0 REV__ENST00000561606.1_1_5:10352943-10353066:-|nuORF REV__ENST00000561606.1_1_5:10352943-10353066:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.798095703125 2 606.798403 1211.58225 -0.45681 -0.00027719 -0.1316 -7.9856E-05 -0.58842 -0.00035705 606.7984778630172 44.522 0.1544 44.522 44.455 44.61 0 13 7 2 0 0 0 0.13231 1 24229 24229 39.957 39.957 1 8133400 + 77234 28843 51626 52732 89896 89896 -0.015074970817977373 YERHRRRRHHH 11 Unmodified _YERHRRRRHHH_ 0 0 0 REV__ENSG00000166546|ENST00000536005|BEAN1 REV__ENSG00000166546|ENST00000536005|BEAN1 MSMS AL20221201_MKP_PDAC_01 4 820.4352416992188 2 820.436121 1638.85769 NaN NaN NaN NaN NaN NaN NaN 41.242 1 36.635 36.135 37.135 -4.6079 0 0 0 0.94287 1 24740 24740 1.3295 0.9789 1 + 77235 22132 51627 52733 89897 89897 0.06381437400091272 YERIVYPYEM 10 Unmodified _YERIVYPYEM_ 0 0 0 nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C nc|ENSG00000126012|P41229-2|KDM5C nc|ENSG00000126012|P41229-2|KDM5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 454.8859558105469 3 454.884801 1361.63257 0.31953 0.00014535 1.2774 0.00058105 1.5969 0.0007264 454.88560352948707 87.94 0.092667 87.993 87.929 88.022 0.053352 5 3 2 0 0 0 0.64628 1 48927 48927 5.0475 2.9636 1 8211100 77236 3922 51628 52734 89898 89898 -0.033777107483047075 YERLKMFYF 9 Unmodified _YERLKMFYF_ 0 0 0 REV__ENSG00000196935|ENST00000355086|SRGAP1 REV__ENSG00000196935|ENST00000355086|SRGAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8856506347656 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 39.677 1 39.682 39.182 40.182 0.0050545 0 0 0 0.83812 1 21138 21138 2.9952 0.49676 1 + 77237 23883 51629 52735 89899 89899 0.0012721818509362492 YERQLVLEL 9 Unmodified _YERQLVLEL_ 0 0 0 ENSG00000175595|ENST00000311895|ERCC4;ENST00000576348.1_1_16:14014055-14020614:+|nuORF;nc|ENSG00000175595|Q92889-2|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 ENSG00000175595|ENST00000311895|ERCC4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.295166015625 2 581.826963 1161.63937 -0.20712 -0.00012051 0.75348 0.0004384 0.54636 0.00031789 581.8274317674717 61.38 0.33929 60.891 60.777 61.116 -0.48932 29 15 3 0 0 0 0.20358 1 33409 33409 10.074 0 1 3137900 77238 8532 51630 52736 89900 89900 0.06501970194563 YERQYQAEEQ 10 Unmodified _YERQYQAEEQ_ 0 0 0 REV__ENST00000589493.1_1_17:40967924-40970674:-|nuORF REV__ENST00000589493.1_1_17:40967924-40970674:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 448.5332946777344 3 448.533596 1342.57896 1.3974 0.00062677 -2.0947 -0.00093957 -0.69736 -0.00031279 448.5327115394917 97.821 0.10005 91.645 91.587 91.687 -6.1757 8 6 2 0 0 0 0.67755 1 64854 64854 5.4027 2.0831 1 14536000 + 77239 19551 51631 52737 89901 89901 -0.07862791926459067 YERRTMLLFCQ 11 Unmodified _YERRTMLLFCQ_ 0 0 0 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 nc|ENSG00000105971|P51636-3|CAV2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 486.7432556152344 3 487.244335 1458.71118 1.0573 0.00051516 -0.43026 -0.00020964 0.62704 0.00030552 487.24418781190457 36.948 0.65001 32.664 32.422 33.072 -4.2835 85 39 4 0 0 0 0.30482 1 21818 21818 4.1166 1.8639 1 38564000 77240 16104 51632 52738 89902 89902 0.00016818285143926914 YERSKFSDP 9 Unmodified _YERSKFSDP_ 0 0 0 REV__nc|ENSG00000175497|Q8N608-4|DPP10 REV__nc|ENSG00000175497|Q8N608-4|DPP10 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2556762695312 2 564.769645 1127.52474 0.65904 0.00037221 1.023 0.00057778 1.6821 0.00094998 564.7714250401773 60.108 0.11386 60.108 60.003 60.116 0 6 4 2 0 0 0 0.16785 1 33481 33481 23.148 14.555 1 1739500 + 77241 22874 51633 52739 89903 89903 -0.03392339287370305 YERTDYDTKK 10 Unmodified _YERTDYDTKK_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2135314941406 3 440.213975 1317.62009 0.065149 2.868E-05 -0.11665 -5.1353E-05 -0.051505 -2.2673E-05 440.214172759906 37.067 0.46894 37.089 36.816 37.285 0.021545 44 21 3 0 0 0 0.72607 1 19763 19763 0 0 1 3372800 + 77242 19336 51634 52740 89904 89904 -0.026010308870354493 YERVEDMTMDY 11 Unmodified _YERVEDMTMDY_ 0 0 0 REV__nc|ENSG00000154217|Q9UKF7-2|PITPNC1 REV__nc|ENSG00000154217|Q9UKF7-2|PITPNC1 MSMS AL20221201_MKP_PDAC_01 4 484.5333862304688 3 484.532099 1450.57447 NaN NaN NaN NaN NaN NaN NaN 98.671 1 92.495 91.995 92.995 -6.1757 0 0 0 0.94184 1 65488 65488 0.40827 0 1 + 77243 29715 51635 52741 89905 89905 -0.13279760455907308 YERWWYEKLIN 11 Unmodified _YERWWYEKLIN_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 800.4008178710938 2 800.401358 1598.78816 NaN NaN NaN NaN NaN NaN NaN 48.715 1 48.671 48.171 49.171 -0.04369 0 0 0 0.94301 1 26295 26295 0.35063 0 1 77244 2724 51636 52742 89906 89906 0.012720760974616496 YESCLEAYST 10 Unmodified _YESCLEAYST_ 0 0 0 REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 REV__nc|ENSG00000133710|Q9NQ38-3|SPINK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2391357421875 2 583.239529 1164.46451 -0.38328 -0.00022355 -0.50427 -0.00029411 -0.88756 -0.00051766 583.2392983198159 56.013 0.22265 56.013 55.916 56.138 0 26 10 3 0 0 0 0.60623 1 31127 31127 10.824 0 1 7548300 + 77245 29634 51637 52743 89907 89907 -0.11114817732800475 YESFVAWYL 9 Unmodified _YESFVAWYL_ 0 0 0 REV__nc|ENSG00000116906|O15228-2|GNPAT REV__nc|ENSG00000116906|O15228-2|GNPAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1907958984375 3 393.19033 1176.54916 1.1837 0.00046541 -0.10312 -4.0547E-05 1.0806 0.00042486 393.1902428293236 80.304 2.0794 74.129 72.437 74.516 -6.1757 150 121 2 0 0 0 0.54444 1 52386 52386 5.2969 2.5617 1 21484000 + 77246 19074 51638 52744 89908 89908 -0.03205079133840627 YESPLTQIY 9 Unmodified _YESPLTQIY_ 0 0 0 REV__nc|ENSG00000183576|Q86TU7-3|SETD3 REV__nc|ENSG00000183576|Q86TU7-3|SETD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2766723632812 2 557.276772 1112.53899 NaN NaN NaN NaN NaN NaN NaN 75.262 1 74.785 74.285 75.285 -0.47714 0 0 0 0.6306 1 41197 41197 11.64 1.5664 1 + 77247 23356 51639 52745 89909 89909 -0.012776868590890444 YESTLDFMS 9 Unmodified _YESTLDFMS_ 0 0 0 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 REV__nc|ENSG00000107099|Q8NF50-4|DOCK8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.73193359375 2 546.73134 1091.44813 -0.8366 -0.0004574 -0.62771 -0.00034319 -1.4643 -0.00080058 546.7310482389482 32.264 0.33121 32.264 32.043 32.374 0 35 16 3 0 0 0 0.43463 1 16788 16788 10.824 2.9138 1 4829200 + 77248 29555 51640 52746 89910 89910 -0.0939389889888389 YESTRKENL 9 Unmodified _YESTRKENL_ 0 0 0 ENSG00000143631|ENST00000368799|FLG;CON__P20930 ENSG00000143631|ENST00000368799|FLG ENSG00000143631|ENST00000368799|FLG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.5281982421875 3 380.527894 1138.56185 0.030652 1.1664E-05 0.76006 0.00028922 0.79071 0.00030089 380.5282143116934 15.436 0.14011 15.441 15.365 15.505 0.0057774 17 10 2 0 0 0 0.14 1 7705 7705 21.59 0 1 2195000 + 77249 174 51641 52747 89911 89911 -0.0018866774159960187 YETISEESSS 10 Unmodified _YETISEESSS_ 0 0 0 REV__ENSG00000135222|ENST00000353151|CSN2 REV__ENSG00000135222|ENST00000353151|CSN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2376708984375 2 566.238041 1130.46153 0.75463 0.0004273 -1.7807 -0.0010083 -1.0261 -0.000581 566.2371276899895 67.758 0.50138 61.582 61.352 61.854 -6.1757 64 28 3 0 0 0 0.62068 1 44271 44271 10.074 1.4806 1 49351000 + 77250 20045 51642 52748 89912 89912 -0.09848369585915862 YETRTPPGY 9 Unmodified _YETRTPPGY_ 0 0 0 REV__ENSG00000116350|ENST00000373795|SRSF4 REV__ENSG00000116350|ENST00000373795|SRSF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2609252929688 2 542.258914 1082.50327 NaN NaN NaN NaN NaN NaN NaN 20.806 1 20.806 20.306 21.306 0 0 0 0 0.6306 1 10487 10487 11.64 3.047 1 + 77251 19039 51643 52749 89913 89913 -0.03467724316078602 YEVDYASF 8 Unmodified _YEVDYASF_ 0 0 0 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 ENSG00000162728|ENST00000368088|KCNJ9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.213134765625 2 497.21364 992.412728 0.081068 4.0308E-05 0.088977 4.424E-05 0.17004 8.4549E-05 497.2135970058826 42.07 0.22116 42.07 41.94 42.161 0 19 11 2 0 0 0 0.74163 1 22748 22748 13.508 4.1604 1 6433600 77252 6901 51644 52750 89914 89914 -0.0837819336437633 YEVFVQAQL 9 Unmodified _YEVFVQAQL_ 0 0 0 REV__ENST00000492424.1_1_20:17487687-17492707:-|nuORF REV__ENST00000492424.1_1_20:17487687-17492707:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1946105957031 3 366.193963 1095.56006 0.80264 0.00029392 0.24071 8.8147E-05 1.0434 0.00038207 366.19389550022225 15.286 0.21094 12.759 12.677 12.888 -2.5273 71 37 2 0 0 0 0.43463 1 7841 7841 7.1017 2.5729 1 10270000 + 77253 27900 51645 52751 89915 89915 0.016103232404248047 YEVLTPLKW 9 Unmodified _YEVLTPLKW_ 0 0 0 ENSG00000099721|ENST00000651267|AMELY;ENSG00000125363|ENST00000380714|AMELX ENSG00000099721|ENST00000651267|AMELY ENSG00000099721|ENST00000651267|AMELY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.8206176757812 2 574.82115 1147.62775 NaN NaN NaN NaN NaN NaN NaN 87.918 1 87.413 86.913 87.913 -0.50423 0 0 0 0.79771 1 48088 48088 6.2058 2.2614 1 77254 1703 51646 52752 89916 89916 0.059837731712150344 YEVMEPCCY 9 Unmodified _YEVMEPCCY_ 0 0 0 REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ REV__nc|ENSG00000143442|Q7Z3K3-5|POGZ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.814208984375 2 568.708496 1135.40244 0.91043 0.00051777 2.8073 0.0015965 3.7177 0.0021143 568.7091843984579 54.189 0.21858 54.189 54.111 54.33 0 16 9 2 0 0 0 0.20528 1 30122 30122 8.5933 1.304 1 1743500 + 77255 20639 51647 52753 89917 89917 -0.1598458367711828 YEVWLGTLF 9 Unmodified _YEVWLGTLF_ 0 0 0 nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1;ENST00000492329.5_1_3:49721463-49723185:-|nuORF;nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000186715|Q2TV78|MST1L nc|ENSG00000173531|P26927|MST1;nc|ENSG00000186715|Q2TV78-2|MST1L nc|ENSG00000186715|Q2TV78-2|MST1L MSMS AL20221201_MKP_PDAC_01 4 564.30029296875 2 564.292225 1126.5699 NaN NaN NaN NaN NaN NaN NaN 47.516 1 42.283 41.783 42.783 -5.2339 0 0 0 0.12337 1 29498 29498 39.957 5.8549 1 77256 16463;8334 51648 52754 89918 89918 0.011675112458078729 YEVWRDPNNID 11 Unmodified _YEVWRDPNNID_ 0 0 0 ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L ENSG00000145087|ENST00000471454|STXBP5L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 710.8265991210938 2 710.828223 1419.64189 0.56666 0.0004028 -1.8182 -0.0012924 -1.2515 -0.00088961 710.8266700272677 81.923 0.15553 81.428 81.342 81.498 -0.4952 9 5 2 0 0 0 0.71618 1 44882 44882 2.7352 0 1 462800 77257 5665 51649 52755 89919 89919 -0.051142261384256926 YEWEEQSF 8 Unmodified _YEWEEQSF_ 0 0 0 REV__ENSG00000176222|ENST00000587539|ZNF404;REV__ENSG00000186020|ENST00000591340|ZNF529 REV__ENSG00000186020|ENST00000591340|ZNF529 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2296752929688 2 559.227279 1116.44001 0.54688 0.00030583 1.6649 0.00093108 2.2118 0.0012369 559.2280802251005 67.122 0.235 66.639 66.46 66.695 -0.48249 18 10 2 0 0 0 0.70294 1 36605 36605 16.942 2.104 1 1991900 + 77258 22918;23546 51650 52756 89920 89920 -0.11355709823988036 YEWEYDEE 8 Unmodified _YEWEYDEE_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-3|SART3;ENST00000552221.1_1_12:108941677-108954930:-|nuORF nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7144775390625 2 581.714202 1161.41385 0.2698 0.00015695 0.25954 0.00015098 0.52934 0.00030792 581.7142561200586 66.08 0.33083 66.08 65.864 66.195 0 27 16 2 0 0 0 0.80143 1 36807 36807 5.7604 0 1 4785900 77259 1171 51651 52757 89921 89921 -0.16040023786126767 YEWEYDEEEEK 11 Unmodified _YEWEYDEEEEK_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3;nc|ENSG00000075856|Q15020-3|SART3;ENST00000552221.1_1_12:108941677-108954930:-|nuORF nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8494873046875 4 387.905776 1547.594 -0.55244 -0.0002143 0.96299 0.00037355 0.41055 0.00015926 388.1567661115808 33.659 0.18327 33.659 33.6 33.783 0 14 9 2 0 0 0 0.74046 1 17641 17641 0.45452 0 1 3252600 77260 1171 51652 52758 89922 89922 -0.15789389639780893 YEWHEYSR 8 Unmodified _YEWHEYSR_ 0 0 0 REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2 REV__nc|ENSG00000157593|Q8TB61-5|SLC35B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2559204101562 2 585.254163 1168.49377 -0.30461 -0.00017828 0.93277 0.00054591 0.62815 0.00036763 585.2550310229998 23.708 0.52668 23.708 23.489 24.016 0 75 26 4 0 0 0 0.81007 1 12213 12213 0.6015 0 1 4607700 + 77261 21392 51653 52759 89923 89923 -0.08373492601617727 YEWIKFFRF 9 Unmodified _YEWIKFFRF_ 0 0 0 REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF REV__ENST00000323468.9_1_11:108345302-108345425:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.8088989257812 2 668.347866 1334.68118 NaN NaN NaN NaN NaN NaN NaN 88.531 1 88.027 87.527 88.527 -0.50423 0 0 0 0.85737 1 48418 48418 0.6015 0 1 + 77262 25527 51654 52760 89924 89924 0.027225706737226574 YEWQQRQF 8 Unmodified _YEWQQRQF_ 0 0 0 ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5;nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5 ENST00000510738.2_1_12:19413894-19459437:+|nuORF ENST00000510738.2_1_12:19413894-19459437:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.7772216796875 2 592.777805 1183.54106 0.28164 0.00016695 -1.2237 -0.00072539 -0.94207 -0.00055844 592.7767895883859 66.632 0.23466 66.632 66.491 66.725 0 15 10 2 0 0 0 0.80143 1 37143 37143 5.7604 1.4312 1 1392800 77263 737 51655 52761 89925 89925 -0.04337213330632039 YEWSLMMS 8 Unmodified _YEWSLMMS_ 0 0 0 REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF REV__ENST00000478743.1_1_X:71710853-71792680:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.72216796875 2 523.719721 1045.42489 NaN NaN NaN NaN NaN NaN NaN 65.762 1 65.762 65.262 66.262 0 0 0 0 0.97444 1 36677 36677 5.2307 0.47466 1 + 77264 27643 51656 52762 89926 89926 -0.09600616217198876 YEYDCQQRII 10 Unmodified _YEYDCQQRII_ 0 0 0 ENST00000415128.6_1_6:142623466-142692070:+|nuORF ENST00000415128.6_1_6:142623466-142692070:+|nuORF ENST00000415128.6_1_6:142623466-142692070:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.8084106445312 2 665.808445 1329.60234 -0.023958 -1.5952E-05 -0.91786 -0.00061112 -0.94182 -0.00062707 665.8080866758296 89.437 0.27292 89.437 89.284 89.556 0 29 15 3 0 0 0 0.70951 1 49469 49469 1.8442 0.19162 1 965620 77265 13017 51657 52763 89927 89927 -0.049280694134949954 YEYEVQVF 8 Unmodified _YEYEVQVF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7523193359375 2 538.75039 1075.48623 0.38016 0.00020481 2.0654 0.0011127 2.4456 0.0013175 538.751579045844 84.553 0.36012 84.053 83.797 84.157 -0.49961 30 16 2 0 0 0 0.79669 1 46227 46227 8.5933 2.8329 1 1291800 77266 6400 51658 52764 89928 89928 -0.04849644921910112 YEYKNPAIFN 10 Unmodified _YEYKNPAIFN_ 0 0 0 REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2 REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8093872070312 2 629.808771 1257.60299 0.83861 0.00052816 0.55743 0.00035107 1.396 0.00087923 629.8089516383692 74.369 0.83348 68.193 67.903 68.737 -6.1757 59 43 2 0 0 0 0.18021 2 48611 48611;48742 36.127 11.136 1 10619000 + 77267 17341 51659 52765 89929;89930 89929 -0.015509067021412193 YEYLYLYLY 9 Unmodified _YEYLYLYLY_ 0 0 0 ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 434.8827514648438 3 434.881274 1301.62199 NaN NaN NaN NaN NaN NaN NaN 32.818 1 32.818 32.318 33.318 0 0 0 0 0.84369 1 17172 17172 1.1933 0.56652 1 77268 14667 51660 52766 89931 89931 -0.016753701310790348 YEYMGDSSL 9 Unmodified _YEYMGDSSL_ 0 0 0 REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7163696289062 2 532.71569 1063.41683 0.29148 0.00015528 0.34132 0.00018183 0.6328 0.00033711 532.7167322260594 61.627 0.34522 61.627 61.497 61.842 0 41 15 4 0 0 0 0.54444 1 34344 34344 4.756 0 1 4045100 + 77269 21885 51661 52767 89932 89932 -0.11234471932971246 YEYNESFY 8 Unmodified _YEYNESFY_ 0 0 0 nc|ENSG00000243660|B1APH4|ZNF487 nc|ENSG00000243660|B1APH4|ZNF487 nc|ENSG00000243660|B1APH4|ZNF487 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.266357421875 2 557.72183 1113.42911 0.33878 0.00018894 -2.6528 -0.0014795 -2.314 -0.0012906 558.2219488899924 69.966 0.20383 69.966 69.797 70 0 26 18 2 0 0 0 0.80232 1 38914 38914 5.2307 0.90143 1 3918400 77270 16575 51662 52768 89933 89933 -0.12307112198254799 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.84326171875 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 4.9666 1 4.9666 4.4666 5.4666 0 0 0 0 1.0061 1 2389 2389 0 0 1 77271 8104 51663 52769 89934 89934 -0.13577831155384956 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8427734375 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 6.9548 1 6.9548 6.4548 7.4548 0 0 0 0 1.0061 1 3336 3336 0 0 1 77272 8104 51663 52769 89935 89935 -0.13577831155384956 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8434143066406 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 7.5251 1 7.5251 7.0251 8.0251 0 0 0 0 1.0061 1 3603 3603 0 0 1 77273 8104 51663 52769 89936 89936 -0.13577831155384956 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8433532714844 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 8.6772 1 8.6772 8.1772 9.1772 0 0 0 0 1.0061 1 4140 4140 0 0 1 77274 8104 51663 52769 89937 89937 -0.13577831155384956 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.8438415527344 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 8.1077 1 8.0162 7.5162 8.5162 -0.09156 0 0 0 1.0061 1 3982 3982 0 0 1 77275 8104 51663 52769 89938 89938 -0.13577831155384956 YEYYDAGNHW 10 Unmodified _YEYYDAGNHW_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8438110351562 3 439.843882 1316.50982 NaN NaN NaN NaN NaN NaN NaN 12.507 1 12.516 12.016 13.016 0.0096512 0 0 0 1.0061 1 6167 6167 0 0 1 77276 8104 51663 52769 89939 89939 -0.13577831155384956 YFACFEEFG 9 Unmodified _YFACFEEFG_ 0 0 0 REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF REV__ENST00000343889.8_1_1:2411150-2434522:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7229614257812 2 556.723318 1111.43208 NaN NaN NaN NaN NaN NaN NaN 89.797 1 89.797 89.297 90.297 0 0 0 0 0.84369 1 49682 49682 2.3027 1.5091 1 + 77277 21004 51664 52770 89940 89940 -0.11917560345136735 YFAKDVPLL 9 Unmodified _YFAKDVPLL_ 0 0 0 REV__ENST00000480892.1_1_2:27669096-27670441:-|nuORF REV__ENST00000480892.1_1_2:27669096-27670441:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3035278320312 2 533.302593 1064.59063 0.61682 0.00032895 0.14161 7.5519E-05 0.75842 0.00040447 533.3025638373273 78.143 1.3391 71.967 70.899 72.238 -6.1757 138 77 2 0 0 0 0.14602 1 50444 50444 28.487 8.0332 1 22981000 + 77278 20289 51665 52771 89941 89941 0.060921016254724236 YFALKGEEL 9 Unmodified _YFALKGEEL_ 0 0 0 REV__ENSG00000181481|ENST00000328381|RNF135 REV__ENSG00000181481|ENST00000328381|RNF135 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2823486328125 2 535.281857 1068.54916 0.65901 0.00035276 -1.8767 -0.0010045 -1.2177 -0.00065179 535.2807169425109 74.522 0.54054 74.047 73.741 74.281 -0.47588 34 19 2 0 0 0 0.16776 1 40833 40833 26.341 0 1 1930700 + 77279 23206 51666 52772 89942 89942 0.017629208661446683 YFAQIRLFS 9 Unmodified _YFAQIRLFS_ 0 0 0 REV__ENST00000240100.6_1_8:29191910-29192249:-|nuORF REV__ENST00000240100.6_1_8:29191910-29192249:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5440979003906 3 382.209836 1143.60768 -0.58566 -0.00022384 -0.25256 -9.6532E-05 -0.83822 -0.00032038 382.20977760123327 17.492 0.14062 17.492 17.406 17.547 0 27 21 2 0 0 0 0.61256 1 8598 8598 0.26902 0 1 480800 + 77280 24838 51667 52773 89943 89943 0.041620222312758415 YFAQIRLFS 9 Unmodified _YFAQIRLFS_ 0 0 0 REV__ENST00000240100.6_1_8:29191910-29192249:-|nuORF REV__ENST00000240100.6_1_8:29191910-29192249:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 382.209836 1143.60768 -0.58566 -0.00022384 -0.25256 -9.6532E-05 -0.83822 -0.00032038 382.20977760123327 17.492 0.14062 17.492 17.406 17.547 0 0 0 NaN 0.26902 27 21 2 NaN NaN NaN NaN 0 NaN NaN 0 480800 + 77281 24838 51667 52773 0.041620222312758415 YFCCFCSATL 10 Unmodified _YFCCFCSATL_ 0 0 0 REV__ENST00000517956.5_1_8:124511968-124512073:-|nuORF REV__ENST00000517956.5_1_8:124511968-124512073:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2274169921875 2 579.226856 1156.43916 0.34443 0.0001995 -0.3983 -0.0002307 -0.053868 -3.1202E-05 579.22641822462 59.719 0.30371 59.228 59.069 59.372 -0.49079 28 14 3 0 0 0 0.67046 1 32511 32511 6.7232 1.9672 1 2394800 + 77282 28237 51668 52774 89944 89944 -0.13280287060570117 YFCNRAAAY 9 Unmodified _YFCNRAAAY_ 0 0 0 ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA ENSG00000104969|ENST00000221566|SGTA MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7413330078125 2 539.742376 1077.4702 -0.041428 -2.2361E-05 -0.027441 -1.4811E-05 -0.068869 -3.7172E-05 539.7422965780898 85.195 0.77119 79.019 78.636 79.407 -6.1757 124 47 3 0 0 0 0.30562 1 55976 55976 16.942 2.3606 1 79372000 77283 2265 51669 52775 89945 89945 -0.06543629639804749 YFCYYYFL 8 Unmodified _YFCYYYFL_ 0 0 0 ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.25537109375 2 591.254254 1180.49396 0.6818 0.00040312 -1.0561 -0.0006244 -0.37425 -0.00022128 591.2537278592149 72.937 0.37649 72.461 72.318 72.695 -0.47588 43 16 3 0 0 0 0.70131 1 39897 39897 17.087 1.2394 1 2623900 77284 10296 51670 52776 89946 89946 -0.08907208925984378 YFCYYYFL 8 Unmodified _YFCYYYFL_ 0 0 0 ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA ENSG00000204520|ENST00000449934|MICA MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.8124389648438 2 591.254254 1180.49396 -0.027556 -1.6293E-05 -0.43589 -0.00025772 -0.46345 -0.00027402 591.2538154735032 72.517 0.28302 72.558 72.378 72.661 0.041725 32 12 3 0 0 0 8.7369 1 39913 39913 17.087 1.2394 1 4223400 77285 10296 51670 52776 89947 89947 -0.08907208925984378 YFDAIPVTM 9 Oxidation (M) _YFDAIPVTM(Oxidation (M))_ YFDAIPVTM(1) YFDAIPVTM(55) 0 0 1 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000507282.1_1_5:1488500-1495016:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.7557373046875 2 536.754618 1071.49468 0.60329 0.00032382 0.82411 0.00044235 1.4274 0.00076616 536.7543891707088 62.416 0.39514 61.928 61.704 62.099 -0.48764 61 18 4 0 0 0 0.031062 2 33939 33939;34045 54.774 33.027 1 9826000 77286 6262 51671 52777 89948;89949 89948 1113 -0.03820414276947304 YFDAIPVTM 9 Unmodified _YFDAIPVTM_ 0 0 0 ENSG00000153395|ENST00000283415|LPCAT1;ENST00000507282.1_1_5:1488500-1495016:-|nuORF ENSG00000153395|ENST00000283415|LPCAT1 ENSG00000153395|ENST00000283415|LPCAT1 MSMS AL20221201_MKP_PDAC_01 4 528.7601928710938 2 528.757161 1055.49977 NaN NaN NaN NaN NaN NaN NaN 89.07 1 82.894 82.394 83.394 -6.1757 0 0 0 0.26667 1 58785 58785 26.884 2.2098 1 77287 6262 51671 52778 89950 89950 -0.025761104143157354 YFDALVKM 8 Oxidation (M) _YFDALVKM(Oxidation (M))_ YFDALVKM(1) YFDALVKM(44) 0 0 1 nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2;ENST00000570913.5_1_17:79009009-79050117:+|nuORF nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.751220703125 2 501.751879 1001.4892 0.35683 0.00017904 0.6411 0.00032167 0.99793 0.00050072 501.7520453583076 47.11 0.31137 46.774 46.604 46.915 -0.33664 27 15 2 0 0 0 0.40602 1 25236 25236 43.858 31.327 1 3606600 77288 8546;15482 51672 52779 89951 89951 1452 -0.011480930687298496 YFDCCVRQI 9 2 Carbamidomethyl (C) _YFDC(Carbamidomethyl (C))C(Carbamidomethyl (C))VRQI_ YFDC(1)C(1)VRQI YFDC(54)C(54)VRQI 0 2 0 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 ENSG00000163428|ENST00000295628|LRRC58 MSMS AL20221201_MKP_PDAC_01 4 630.7785034179688 2 630.778633 1259.54271 NaN NaN NaN NaN NaN NaN NaN 49.904 1 44.365 43.865 44.865 -5.5391 0 0 0 0.059498 1 31232 31232 53.833 22.564 1 77289 6992 51673 52780 89952 89952 684;685 -0.07667663628535593 YFDDALEDF 9 Unmodified _YFDDALEDF_ 0 0 0 ENSG00000183891|ENST00000333610|TTC32 ENSG00000183891|ENST00000333610|TTC32 ENSG00000183891|ENST00000333610|TTC32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.7352905273438 2 567.734937 1133.45532 0.32023 0.0001818 -0.39199 -0.00022254 -0.07176 -4.0741E-05 567.7345211733685 77.375 0.23816 77.375 77.215 77.453 0 19 12 2 0 0 0 0.2546 1 42993 42993 26.884 15.243 1 2004700 77290 9209 51674 52781 89953 89953 -0.10606843026812385 YFDDCMQLL 9 Carbamidomethyl (C) _YFDDC(Carbamidomethyl (C))MQLL_ YFDDC(1)MQLL YFDDC(57)MQLL 0 1 0 ENSG00000116044|ENST00000397062|NFE2L2;nc|ENSG00000116044|Q16236-2|NFE2L2;nc|ENSG00000116044|Q16236-3|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 ENSG00000116044|ENST00000397062|NFE2L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.754150390625 2 602.754292 1203.49403 0.74513 0.00044913 -0.25784 -0.00015541 0.48729 0.00029372 602.7544060378636 88.122 0.44097 81.946 81.765 82.206 -6.1757 45 24 3 0 0 0 0.026094 2 58062 58062;58182 57.471 48.088 1 19723000 77291 3188 51675 52782 89954;89955 89954 329 -0.09957576988313122 YFDEKELEL 9 Unmodified _YFDEKELEL_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2 nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.287353515625 2 593.287337 1184.56012 0.25809 0.00015312 -0.67927 -0.000403 -0.42118 -0.00024988 593.2869889711203 59.452 0.45403 59.452 59.148 59.602 0 44 19 3 0 0 0 0.020316 2 33080 33080;33200 63.227 30.442 1 18447000 77292 10084 51676 52783 89956;89957 89956 -0.02477721550235401 YFDEKELEL 9 Unmodified _YFDEKELEL_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2 nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7892456054688 2 593.287337 1184.56012 0.22465 0.00013328 -1.0643 -0.00063145 -0.83968 -0.00049817 593.286772886949 60.018 0.22324 59.527 59.429 59.652 -0.49079 14 10 2 0 0 0 0.11784 1 32680 32680 31.268 0.6318 1 2845700 77293 10084 51676 52783 89958 89958 -0.02477721550235401 YFDEKELEL 9 Unmodified _YFDEKELEL_ 0 0 0 nc|ENSG00000198373|O00308-2|WWP2;ENSG00000198373|ENST00000359154|WWP2;nc|ENSG00000198373|O00308-3|WWP2 nc|ENSG00000198373|O00308-2|WWP2 nc|ENSG00000198373|O00308-2|WWP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.288818359375 2 593.287337 1184.56012 0.5123 0.00030394 0.26434 0.00015683 0.77663 0.00046077 593.2876102101116 66.183 0.56259 60.007 59.805 60.368 -6.1757 56 31 2 0 0 0 0.037253 2 42966 42966;43108 51.415 18.63 1 22691000 77294 10084 51676 52783 89959;89960 89959 -0.02477721550235401 YFDEPVEL 8 Unmodified _YFDEPVEL_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2373962402344 2 506.237116 1010.45968 0.59287 0.00030014 -0.12209 -6.1808E-05 0.47078 0.00023833 506.23781069759383 67.819 0.40904 67.819 67.583 67.992 0 45 19 3 0 0 0 0.5953 2 37735 37735;37841 26.341 12.833 1 10641000 77295 10694 51677 52784 89961;89962 89961 -0.04513333813235931 YFDEPVEL 8 Unmodified _YFDEPVEL_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2374877929688 2 506.237116 1010.45968 0.74434 0.00037681 -0.35961 -0.00018205 0.38473 0.00019476 506.2370275279017 75.744 0.55626 69.569 69.3 69.856 -6.1757 70 29 3 0 0 0 0.37649 3 49441 49441;49560;49687 46.921 23.772 1 36484000 77296 10694 51677 52784 89963;89964;89965 89963 -0.04513333813235931 YFDEPVELR 9 Unmodified _YFDEPVELR_ 0 0 0 ENSG00000242247|ENST00000263245|ARFGAP3;nc|ENSG00000242247|Q9NP61-2|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 ENSG00000242247|ENST00000263245|ARFGAP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2891845703125 2 584.287671 1166.56079 0.52813 0.00030858 0.93809 0.00054811 1.4662 0.00085669 584.2884670001852 49.633 0.5828 49.633 49.277 49.859 0 60 26 4 0 0 0 0.010301 2 27290 27290;27405 79.596 33.575 1 38732000 77297 10694 51678 52785 89966;89967 89966 -0.015828821105287716 YFDFHSVSL 9 Unmodified _YFDFHSVSL_ 0 0 0 REV__ENSG00000125975|ENST00000444723|C20orf173 REV__ENSG00000125975|ENST00000444723|C20orf173 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.76611328125 2 557.763832 1113.51311 0.37006 0.00020641 3.2245 0.0017985 3.5946 0.0020049 557.7653449687616 45.579 0.1879 45.579 45.497 45.685 0 19 9 3 0 0 0 0.39863 1 24909 24909 12.532 1.7076 1 4807200 + 77298 19533 51679 52786 89968 89968 -0.03910536310718271 YFDIYYPL 8 Unmodified _YFDIYYPL_ 0 0 0 nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;nc|ENSG00000164308|Q6P179-4|ERAP2;nc|ENSG00000164308|Q6P179-2|ERAP2 nc|ENSG00000164308|Q6P179-3|ERAP2 nc|ENSG00000164308|Q6P179-3|ERAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.2111206054688 3 365.179543 1092.5168 0.020548 7.5036E-06 1.3645 0.0004983 1.3851 0.0005058 365.1799859810934 41.313 0.18316 41.01 40.863 41.047 -0.30304 12 8 2 0 0 0 8.7369 1 21844 21844 0.45834 0.057624 1 1854600 77299 7177 51680 52787 89969 89969 -0.025758665368812217 YFDKAPGSL 9 Unmodified _YFDKAPGSL_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA;REV__ENST00000466772.5_1_22:21065465-21081626:-|nuORF REV__ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2536010742188 2 499.2531 996.491647 0.8062 0.0004025 -2.0288 -0.0010129 -1.2226 -0.00061038 499.2527371558488 68.289 0.3625 62.113 61.957 62.32 -6.1757 34 21 2 0 0 0 0.14602 1 44464 44464 28.487 1.6032 1 20260000 + 77300 24456;27416 51681 52788 89970 89970 -0.006739213394212129 YFDLLGELM 9 Oxidation (M) _YFDLLGELM(Oxidation (M))_ YFDLLGELM(1) YFDLLGELM(44) 0 0 1 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7683715820312 2 558.767726 1115.5209 1.4064 0.00078588 -0.21261 -0.0001188 1.1938 0.00066708 558.7675049695509 100.2 0.19759 94.02 93.924 94.122 -6.1757 25 11 3 0 0 0 0.052168 1 66957 66957 44.407 18.066 1 72212000 77301 1899 51682 52789 89971 89971 318 -0.032241451054687786 YFDLQLLVF 9 Unmodified _YFDLQLLVF_ 0 0 0 ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000526726.1_1_11:125479363-125482632:+|nuORF ENSG00000134910|ENST00000392708|STT3A ENSG00000134910|ENST00000392708|STT3A MSMS AL20221201_MKP_PDAC_01 4 579.3170776367188 2 579.3157 1156.61685 NaN NaN NaN NaN NaN NaN NaN 102.27 1 96.098 95.598 96.598 -6.1757 0 0 0 0.56093 1 68637 68637 13.906 5.3128 1 77302 4654 51683 52790 89972 89972 0.04480370796954958 YFDLQTHVI 9 Unmodified _YFDLQTHVI_ 0 0 0 nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10 nc|ENSG00000130024|Q8WUB8-3|PHF10 nc|ENSG00000130024|Q8WUB8-3|PHF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.29443359375 2 568.292756 1134.57096 0.52794 0.00030003 -0.78705 -0.00044728 -0.25911 -0.00014725 568.2923116747386 63.668 0.1933 63.182 63.04 63.233 -0.48617 18 8 4 0 0 0 0.18255 1 34710 34710 32.786 16.939 1 3183000 77303 4172 51684 52791 89973 89973 0.009057256146888903 YFDLYFWHA 9 Unmodified _YFDLYFWHA_ 0 0 0 REV__nc|ENSG00000172795|Q8IU60-2|DCP2 REV__nc|ENSG00000172795|Q8IU60-2|DCP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.194091796875 3 421.194075 1260.5604 -0.011537 -4.8593E-06 -0.14025 -5.9075E-05 -0.15179 -6.3934E-05 421.1940944096474 38.876 0.1975 38.589 38.475 38.673 -0.28687 20 8 4 0 0 0 0.54444 1 20486 20486 5.2969 3.3905 1 2241000 + 77304 22676 51685 52792 89974 89974 -0.05946257039727243 YFDPANGKF 9 Unmodified _YFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7512817382812 2 529.750724 1057.4869 0.35388 0.00018747 0.20721 0.00010977 0.56109 0.00029724 529.75091207134 48.37 0.33274 47.998 47.849 48.181 -0.37172 30 16 2 0 0 0 0.011968 2 25946 25946;26047 74.929 50.255 1 16910000 77305 7651 51686 52793 89975;89976 89975 -0.03954805482203483 YFDPANGKF 9 Unmodified _YFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 529.751220703125 2 529.750724 1057.4869 1.2373 0.00065545 -0.47505 -0.00025166 0.76222 0.00040378 529.7503889970744 53.937 0.46724 48.072 47.872 48.339 -5.8653 51 27 2 0 0 0 0.011968 1 34237 34237 74.929 49.53 1 95785000 77306 7651 51686 52793 89977 89977 -0.03954805482203483 YFDPANGKF 9 Unmodified _YFDPANGKF_ 0 0 0 ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF ENSG00000167658|ENST00000309311|EEF2 ENSG00000167658|ENST00000309311|EEF2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 529.750724 1057.4869 0.42003 0.00022251 0.57862 0.00030653 0.99865 0.00052903 529.7511934497384 48.086 0.19686 48.047 47.946 48.142 -0.038643 0.0078481 0.00061011 NaN 74.929 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1655300 77307 7651 51686 52793 -0.03954805482203483 YFDPKQTDV 9 Unmodified _YFDPKQTDV_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.767333984375 2 556.766571 1111.51859 NaN NaN NaN NaN NaN NaN NaN 34.583 1 34.583 34.083 35.083 0 0 0 0 0.16996 1 18230 18230 34.402 11.253 1 77308 9907 51687 52794 89978 89978 -0.032708575189190014 YFDPQYFEF 9 Unmodified _YFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.269287109375 2 628.268947 1254.52334 0.2351 0.00014771 -0.43788 -0.00027511 -0.20278 -0.0001274 628.2687164443387 91.584 0.26379 91.103 90.925 91.189 -0.48092 25 16 2 0 0 0 0.49766 1 50038 50038 11.64 7.6959 1 911200 77309 1389 51688 52795 89979 89979 -0.09373973376159483 YFDPQYFEF 9 Unmodified _YFDPQYFEF_ 0 0 0 ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I ENSG00000084623|ENST00000677711|EIF3I MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.2710571289062 2 628.268947 1254.52334 0.8588 0.00053956 1.1817 0.00074243 2.0405 0.001282 628.2699180956065 99.451 0.10931 93.275 93.214 93.324 -6.1757 12 6 2 0 0 0 0.060956 1 66238 66238 53.833 19.431 1 46895000 77310 1389 51688 52795 89980 89980 -0.09373973376159483 YFDRYEEPL 9 Unmodified _YFDRYEEPL_ 0 0 0 REV__ENSG00000162971|ENST00000354611|TYW5 REV__ENSG00000162971|ENST00000354611|TYW5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 412.8617248535156 3 411.192511 1230.5557 0.30889 0.00012701 0.65945 0.00027116 0.96833 0.00039817 411.19258797812824 23.188 0.8246 20.409 19.857 20.681 -2.7784 213 65 6 0 0 0 0.20428 1 12525 12525 16.566 0 1 131750000 + 77311 21712 51689 52796 89981 89981 -0.050351859731335935 YFDRYEEPL 9 Unmodified _YFDRYEEPL_ 0 0 0 REV__ENSG00000162971|ENST00000354611|TYW5 REV__ENSG00000162971|ENST00000354611|TYW5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 411.192511 1230.5557 -0.50218 -0.00020649 0.975 0.00040091 0.47282 0.00019442 411.1928188654312 20.405 0.21346 20.405 20.281 20.495 0 0.029843 0.00010855 NaN 16.566 84 32 3 NaN NaN NaN NaN 0 NaN NaN 0 5051500 + 77312 21712 51689 52796 -0.050351859731335935 YFDRYEEPL 9 Unmodified _YFDRYEEPL_ 0 0 0 REV__ENSG00000162971|ENST00000354611|TYW5 REV__ENSG00000162971|ENST00000354611|TYW5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 411.192511 1230.5557 -0.082385 -3.3876E-05 1.9349 0.00079561 1.8525 0.00076174 411.19311642171505 20.3 0.14494 20.311 20.208 20.353 0.010551 -0.064279 0.0012926 NaN 16.566 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 616940 + 77313 21712 51689 52796 -0.050351859731335935 YFDSGDYNM 9 Oxidation (M) _YFDSGDYNM(Oxidation (M))_ YFDSGDYNM(1) YFDSGDYNM(44) 0 0 1 ENST00000565288.1_1_15:52844133-52849247:-|nuORF;nc|ENSG00000128989|P56211-2|ARPP19;ENSG00000128989|ENST00000249822|ARPP19;nc|ENSG00000143420|O43768-6|ENSA;nc|ENSG00000143420|O43768-5|ENSA;nc|ENSG00000143420|O43768-2|ENSA;ENSG00000143420|ENST00000369014|ENSA;nc|ENSG00000143420|O43768-9|ENSA;nc|ENSG00000143420|O43768-7|ENSA;nc|ENSG00000143420|O43768-3|ENSA;nc|ENSG00000143420|O43768-4|ENSA ENST00000565288.1_1_15:52844133-52849247:-|nuORF ENST00000565288.1_1_15:52844133-52849247:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2029418945312 2 564.202947 1126.39134 -0.68566 -0.00038685 0.59851 0.00033768 -0.087149 -4.917E-05 564.2030237737412 32.865 0.25497 32.865 32.733 32.988 0 22 12 2 0 0 0 0.052168 1 17181 17181 44.407 37.684 1 2558600 77314 4106 51690 52797 89982 89982 730 -0.16679946455406025 YFDSGYRAF 9 Unmodified _YFDSGYRAF_ 0 0 0 REV__ENST00000584350.1_1_17:66246608-66253107:+|nuORF REV__ENST00000584350.1_1_17:66246608-66253107:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.826904296875 2 563.253631 1124.49271 0.63972 0.00036033 0.27531 0.00015507 0.91503 0.0005154 563.2539580752599 48.928 0.23209 48.884 48.772 49.004 -0.04369 25 11 3 0 0 0 0.20528 1 26373 26373 4.756 0 1 3907100 + 77315 23862 51691 52798 89983 89983 -0.06455706970518804 YFDVEPAQV 9 Unmodified _YFDVEPAQV_ 0 0 0 ENSG00000137207|ENST00000372422|YIPF3;ENST00000460903.2_1_6:43483331-43484545:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF ENSG00000137207|ENST00000372422|YIPF3 ENSG00000137207|ENST00000372422|YIPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2562255859375 2 534.25584 1066.49713 0.43333 0.00023151 0.60981 0.0003258 1.0431 0.0005573 534.2560393558116 58.129 0.37158 58.129 57.968 58.34 0 30 14 3 0 0 0 0.095405 1 32391 32391 34.102 23.279 1 3544400 77316 4912 51692 52799 89984 89984 -0.03346242547627298 YFDVSHEHL 9 Unmodified _YFDVSHEHL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8453063964844 3 382.845334 1145.51417 -0.50948 -0.00019505 0.64087 0.00024535 0.13139 5.0304E-05 382.84544404508136 41.415 0.23811 41.415 41.281 41.519 0 27 11 3 0 0 0 0.06187 1 22311 22311 53.833 38.584 1 24407000 77317 3478 51693 52800 89985 89985 -0.05276321941801143 YFDVSHEHL 9 Unmodified _YFDVSHEHL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.7647705078125 2 573.764363 1145.51417 -0.17979 -0.00010316 0.60003 0.00034428 0.42024 0.00024112 573.7646934614775 41.43 0.13717 41.43 41.325 41.462 0 9 6 2 0 0 0 0.016184 1 22358 22358 67.344 39.715 1 4963700 77318 3478 51693 52800 89986 89986 -0.05276321941801143 YFDVSHEHL 9 Unmodified _YFDVSHEHL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 382.8455505371094 3 382.845334 1145.51417 -0.34005 -0.00013019 0.57891 0.00022163 0.23886 9.1448E-05 382.8455547180798 41.718 0.18735 41.411 41.308 41.495 -0.30682 19 8 3 0 0 0 0.016184 1 22118 22118 51.63 40.135 1 10907000 77319 3478 51693 52800 89987 89987 -0.05276321941801143 YFDVSHEHL 9 Unmodified _YFDVSHEHL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.845703125 3 382.845334 1145.51417 0.84479 0.00032342 0.41406 0.00015852 1.2589 0.00048195 382.8455275382155 46.549 0.21625 41.468 41.317 41.534 -5.0805 50 31 2 0 0 0 0.026094 1 28784 28784 43.772 33.622 1 76086000 77320 3478 51693 52800 89988 89988 -0.05276321941801143 YFDVSHEHL 9 Unmodified _YFDVSHEHL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MSMS AL20221201_MKP_PDAC_01 4 573.7635498046875 2 573.764363 1145.51417 NaN NaN NaN NaN NaN NaN NaN 46.594 1 41.513 41.013 42.013 -5.0805 0 0 0 0.023279 1 28821 28821 74.423 46.794 1 77321 3478 51693 52800 89989 89989 -0.05276321941801143 YFDYWENRTA 10 Unmodified _YFDYWENRTA_ 0 0 0 REV__ENSG00000134627|ENST00000299001|PIWIL4 REV__ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 682.7994995117188 2 682.798934 1363.58332 0.58522 0.00039959 0.27867 0.00019027 0.86389 0.00058986 682.7990722957495 59.125 0.22356 59.065 58.943 59.166 -0.060722 26 10 3 0 0 0 0.54684 1 32202 32202 13.906 1.6654 1 4244100 + 77322 19997 51694 52801 89990 89990 -0.0839328271292743 YFEAFKNEL 9 Unmodified _YFEAFKNEL_ 0 0 0 ENSG00000106993|ENST00000381854|CDC37L1 ENSG00000106993|ENST00000381854|CDC37L1 ENSG00000106993|ENST00000381854|CDC37L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7846069335938 2 580.784764 1159.55498 0.45712 0.00026549 1.1524 0.00066931 1.6096 0.0009348 580.7853037629895 88.895 0.29169 88.39 88.227 88.519 -0.50423 17 12 2 0 0 0 0.58466 1 48628 48628 2.3027 0 1 322420 77323 2469 51695 52802 89991 89991 -0.018419806221800172 YFEAPFVIF 9 Unmodified _YFEAPFVIF_ 0 0 0 ENST00000511920.1_1_5:96514654-96518862:-|nuORF ENST00000511920.1_1_5:96514654-96518862:-|nuORF ENST00000511920.1_1_5:96514654-96518862:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.787841796875 2 566.789318 1131.56408 NaN NaN NaN NaN NaN NaN NaN 74.529 1 74.053 73.553 74.553 -0.47588 0 0 0 0.84564 1 40791 40791 2.0598 0.21551 1 77324 14616 51696 52803 89992 89992 0.0035641273411783914 YFEAQPVLV 9 Unmodified _YFEAQPVLV_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.28564453125 2 533.2844 1064.55425 0.34371 0.00018329 0.9614 0.0005127 1.3051 0.00069599 533.2856791656868 69.491 0.30993 69.491 69.326 69.636 0 33 13 3 0 0 0 0.05447 1 38713 38713 43.858 21.406 1 2193100 77325 10769 51697 52804 89993 89993 0.024552247287601858 YFEAQPVLV 9 Unmodified _YFEAQPVLV_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2847900390625 2 533.2844 1064.55425 -0.048596 -2.5915E-05 0.39826 0.00021239 0.34967 0.00018647 533.2848237796605 70.017 0.33272 69.538 69.34 69.673 -0.47903 34 18 2 0 0 0 0.042911 2 38243 38243;38342 48.346 31.404 1 5071000 77326 10769 51697 52804 89994;89995 89994 0.024552247287601858 YFEAQPVLV 9 Unmodified _YFEAQPVLV_ 0 0 0 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 ENSG00000253958|ENST00000519106|CLDN23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.28466796875 2 533.2844 1064.55425 0.31967 0.00017047 -2.338 -0.0012468 -2.0184 -0.0010764 533.2829981688055 77.205 0.36104 71.029 70.86 71.221 -6.1757 35 20 2 0 0 0 0.16226 1 50553 50553 26.884 8.7487 1 22712000 77327 10769 51697 52804 89996 89996 0.024552247287601858 YFEELITML 9 Oxidation (M) _YFEELITM(Oxidation (M))L_ YFEELITM(1)L YFEELITM(60)L 0 0 1 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.2904052734375 2 587.788658 1173.56276 0.93234 0.00054802 -0.57396 -0.00033737 0.35838 0.00021065 587.7883780594534 90.896 0.34584 90.933 90.793 91.139 0.036499 24 12 3 0 0 0 0.023164 1 50549 50549 60.39 39.518 1 11898000 77328 5318;130 51698 52805 89997 89997 8 -0.017075894169465755 YFEELITML 9 Unmodified _YFEELITML_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;CLTC-VMP1|8|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.7921752929688 2 579.791201 1157.56785 0.9044 0.00052436 0.023898 1.3856E-05 0.9283 0.00053822 579.7912859317546 101.42 0.16425 95.242 95.144 95.309 -6.1757 29 8 6 0 0 0 0.06187 1 68044 68044 42.095 23.96 1 110480000 77329 5318;130 51698 52806 89998 89998 -0.004632855543150072 YFEEYGKI 8 Unmodified _YFEEYGKI_ 0 0 0 nc|ENSG00000122566|P22626|HNRNPA2B1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF nc|ENSG00000122566|P22626|HNRNPA2B1 nc|ENSG00000122566|P22626|HNRNPA2B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7532348632812 2 524.752933 1047.49131 NaN NaN NaN NaN NaN NaN NaN 87.609 1 87.105 86.605 87.605 -0.50423 0 0 0 0.97444 1 47922 47922 2.8892 0 1 77330 16163 51699 52807 89999 89999 -0.030533410592852306 YFEGIKQTF 9 Unmodified _YFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7860107421875 2 566.787307 1131.56006 0.55962 0.00031719 0.11648 6.6022E-05 0.67611 0.00038321 566.7875233023004 52.772 0.31685 52.32 52.198 52.515 -0.45173 34 15 3 0 0 0 0.020676 1 28513 28513 76.825 45.556 1 7888500 77331 1846 51700 52808 90000 90000 -0.0004567675957787287 YFEGIKQTF 9 Unmodified _YFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7885131835938 2 566.787307 1131.56006 1.5735 0.00089185 0.55468 0.00031439 2.1282 0.0012062 566.7877024837793 58.968 0.38113 52.893 52.719 53.1 -6.0745 42 20 3 0 0 0 0.20507 1 37824 37824 30.637 12.502 1 35248000 77332 1846 51700 52808 90001 90001 -0.0004567675957787287 YFEKTWLSL 9 Unmodified _YFEKTWLSL_ 0 0 0 ENSG00000134262|ENST00000369569|AP4B1;ENST00000479285.5_1_1:114437689-114438127:-|nuORF ENSG00000134262|ENST00000369569|AP4B1 ENSG00000134262|ENST00000369569|AP4B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8106689453125 2 593.810782 1185.60701 0.88967 0.00052829 -0.16592 -9.8523E-05 0.72375 0.00042977 593.8105043014476 89.439 0.52176 83.263 82.986 83.508 -6.1757 70 28 3 0 0 0 0.18255 1 59031 59031 32.786 5.1569 1 61028000 77333 4580 51701 52809 90002 90002 0.021631827915825852 YFENKVPHGLS 11 Unmodified _YFENKVPHGLS_ 0 0 0 ENST00000474235.1_1_22:39496283-39496472:+|nuORF ENST00000474235.1_1_22:39496283-39496472:+|nuORF ENST00000474235.1_1_22:39496283-39496472:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 430.8881530761719 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 18.138 1 18.138 17.638 18.638 0 0 0 0 0.93669 1 8995 8995 2.2527 0.51045 1 77334 13934 51702 52810 90003 90003 0.0072018456346540916 YFEQGKGTCP 10 Unmodified _YFEQGKGTCP_ 0 0 0 ENSG00000075975|ENST00000170447|MKRN2;nc|ENSG00000075975|Q9H000-2|MKRN2 ENSG00000075975|ENST00000170447|MKRN2 ENSG00000075975|ENST00000170447|MKRN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.1714172363281 3 377.170941 1128.491 -0.48013 -0.00018109 1.2919 0.00048726 0.81176 0.00030617 377.17162591101004 56.017 0.16193 56.017 55.953 56.115 0 11 7 2 0 0 0 0.6966 1 31169 31169 1.5923 0 1 1737100 77335 1176 51703 52811 90004 90004 -0.06811084050764293 YFFDFWNN 8 Unmodified _YFFDFWNN_ 0 0 0 ENSG00000175294|ENST00000312106|CATSPER1;CATSPER1|p.L504I|1|0.2|ENSG00000175294|chr11:66021799-66021799|G/T|missense_variant ENSG00000175294|ENST00000312106|CATSPER1 ENSG00000175294|ENST00000312106|CATSPER1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.7423095703125 2 576.742899 1151.47125 0.34159 0.00019701 -0.36387 -0.00020986 -0.022284 -1.2852E-05 576.7424661690841 81.806 0.3251 81.806 81.66 81.985 0 41 18 3 0 0 0 8.7369 1 45486 45486 0 0 1 2218800 77336 8505 51704 52812 90005 90005 -0.09843091999232456 YFFDRHSE 8 Unmodified _YFFDRHSE_ 0 0 0 ENSG00000171126|ENST00000306078|KCNG3;nc|ENSG00000171126|Q8TAE7-2|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 ENSG00000171126|ENST00000306078|KCNG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.4982299804688 3 367.498046 1099.47231 -0.54477 -0.0002002 0.4506 0.00016559 -0.094169 -3.4607E-05 367.4982141024165 34.967 0.27926 34.967 34.81 35.09 0 22 14 2 0 0 0 0.80232 1 18463 18463 3.5965 1.098 1 4169600 77337 8066 51705 52813 90006 90006 -0.07344877630339397 YFFEWLSIF 9 Unmodified _YFFEWLSIF_ 0 0 0 REV__ENSG00000179387|ENST00000323570|ELMOD2 REV__ENSG00000179387|ENST00000323570|ELMOD2 MSMS AL20221201_MKP_PDAC_01 4 626.30517578125 2 626.307875 1250.6012 NaN NaN NaN NaN NaN NaN NaN 95.763 1 89.587 89.087 90.087 -6.1757 0 0 0 0.57317 1 63434 63434 13.508 0 1 + 77338 23095 51706 52814 90007 90007 -0.014079157201194903 YFFFRVRSRRW 11 Unmodified _YFFFRVRSRRW_ 0 0 0 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 ENSG00000165661|ENST00000358701|QSOX2 MSMS AL20221201_MKP_PDAC_01 4 810.4358520507812 2 810.438944 1618.86333 NaN NaN NaN NaN NaN NaN NaN 43.762 1 38.998 38.498 39.498 -4.7648 0 0 0 0.94301 1 26620 26620 0.35063 0.35063 1 77339 7371 51707 52815 90008 90008 0.07865723139207148 YFFFVFYL 8 Unmodified _YFFFVFYL_ 0 0 0 REV__ENST00000538654.5_1_11:62623246-62623345:-|nuORF REV__ENST00000538654.5_1_11:62623246-62623345:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2869873046875 2 573.288954 1144.56336 NaN NaN NaN NaN NaN NaN NaN 20.728 1 20.728 20.228 21.228 0 0 0 0 0.97444 1 10444 10444 0.79363 0.10326 1 + 77340 28560 51708 52816 90009 90009 -0.0031438191490451572 YFFFYYHQYYH 11 Unmodified _YFFFYYHQYYH_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.3612670898438 2 839.361702 1676.70885 NaN NaN NaN NaN NaN NaN NaN 78.937 1 78.452 77.952 78.952 -0.48596 0 0 0 0.9435 1 43237 43237 0 0 1 + 77341 28142 51709 52817 90010 90010 -0.10243570856641782 YFFFYYHQYYH 11 Unmodified _YFFFYYHQYYH_ 0 0 0 REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF REV__ENST00000510376.1_1_5:176332285-176333139:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 839.8504028320312 2 839.361702 1676.70885 NaN NaN NaN NaN NaN NaN NaN 79.027 1 78.541 78.041 79.041 -0.48596 0 0 0 0.9435 1 43285 43285 0 0 1 + 77342 28142 51709 52817 90011 90011 -0.10243570856641782 YFFGYWQY 8 Unmodified _YFFGYWQY_ 0 0 0 REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.7597045898438 2 587.255643 1172.49673 0.56565 0.00033218 2.0614 0.0012106 2.627 0.0015427 587.7576097146737 22.314 0.1889 19.579 19.505 19.694 -2.7348 13 9 2 0 0 0 8.7369 1 11967 11967 11.114 2.5212 1 1433500 + 77343 28690 51710 52818 90012 90012 -0.08261617476796346 YFFLALSF 8 Unmodified _YFFLALSF_ 0 0 0 REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2664184570312 2 504.265479 1006.51641 0.37961 0.00019142 -1.2034 -0.00060684 -0.82381 -0.00041542 504.2652643546679 79.522 0.66472 79.033 78.593 79.257 -0.48933 83 28 4 0 0 0 0.57408 1 43377 43377 28.173 5.7206 1 3831800 + 77344 26337 51711 52819 90013 90013 0.013407585339450634 YFFLALSF 8 Unmodified _YFFLALSF_ 0 0 0 REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF REV__ENST00000381774.8_1_16:12758653-12758746:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2648010253906 2 504.265479 1006.51641 1.0753 0.00054225 -0.64029 -0.00032288 0.43503 0.00021937 504.265167701693 85.984 0.55435 79.809 79.581 80.136 -6.1757 51 30 2 0 0 0 0.57408 1 56681 56681 28.173 2.7739 1 9384500 + 77345 26337 51711 52819 90014 90014 0.013407585339450634 YFFTYHVL 8 Unmodified _YFFTYHVL_ 0 0 0 nc|ENSG00000165985|Q5VWW1-3|C1QL3;nc|ENSG00000165985|Q5VWW1-2|C1QL3;ENSG00000165985|ENST00000298943|C1QL3;ENSG00000131094|ENST00000253407|C1QL1 nc|ENSG00000165985|Q5VWW1-3|C1QL3 nc|ENSG00000165985|Q5VWW1-3|C1QL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2744140625 2 545.273835 1088.53312 0.84901 0.00046294 -0.75449 -0.0004114 0.094528 5.1544E-05 545.2737802134071 60.08 0.48786 53.965 53.65 54.138 -6.1147 47 26 2 0 0 0 0.57408 2 38467 38467;38609 28.173 3.4993 1 24767000 77346 4298 51712 52820 90015;90016 90015 -0.007607405801081768 YFFVDKRD 8 Unmodified _YFFVDKRD_ 0 0 0 REV__ENSG00000037042|ENST00000251412|TUBG2 REV__ENSG00000037042|ENST00000251412|TUBG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.272216796875 2 545.271824 1088.5291 0.30295 0.00016519 0.6842 0.00037308 0.98716 0.00053827 545.271860980294 54.931 0.61709 54.862 54.681 55.298 -0.068741 70 30 3 0 0 0 0.64853 3 29883 29782;29883;29983 21.747 7.165 1 6398100 + 77347 17171 51713 52821 90017;90018;90019 90018 -0.011628300738038888 YFFWKNMKF 9 Unmodified _YFFWKNMKF_ 0 0 0 ENSG00000105398|ENST00000222002|SULT2A1 ENSG00000105398|ENST00000222002|SULT2A1 ENSG00000105398|ENST00000222002|SULT2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.5508728027344 3 437.551205 1309.63179 0.37163 0.00016261 -0.34047 -0.00014897 0.031162 1.3635E-05 437.55101416407643 22.18 0.1931 22.194 22.085 22.278 0.013796 15 7 3 0 0 0 0.54444 1 11391 11391 2.7352 0.99292 1 1421400 77348 2316 51714 52822 90020 90020 -0.010644606067444329 YFFYNCQY 8 Unmodified _YFFYNCQY_ 0 0 0 ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2341918945312 2 574.23131 1146.44807 0.49889 0.00028648 2.3095 0.0013262 2.8084 0.0016127 574.2326080241909 61.309 0.31554 61.309 61.095 61.411 0 23 13 2 0 0 0 0.80624 1 34115 34115 2.8892 0 1 720100 77349 12425 51715 52823 90021 90021 -0.11929854108234395 YFFYNCQY 8 Unmodified _YFFYNCQY_ 0 0 0 ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF ENST00000373864.5_1_1:28339722-28384581:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.2308959960938 2 574.23131 1146.44807 NaN NaN NaN NaN NaN NaN NaN 27.579 1 27.533 27.033 28.033 -0.046408 0 0 0 0.97444 1 14217 14217 0.79363 0.10326 1 77350 12425 51715 52823 90022 90022 -0.11929854108234395 YFGHNRKQD 9 Unmodified _YFGHNRKQD_ 0 0 0 nc|ENSG00000188611|Q9NR71-2|ASAH2;ENSG00000188611|ENST00000682911|ASAH2;ENSG00000204147|ENST00000647317|ASAH2B;nc|ENSG00000204147|P0C7U1|ASAH2B nc|ENSG00000188611|Q9NR71-2|ASAH2 nc|ENSG00000188611|Q9NR71-2|ASAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8572998046875 3 388.856345 1163.5472 -0.56475 -0.00021961 0.58792 0.00022861 0.023164 9.0074E-06 388.8566083606058 18.197 0.208 18.197 18.093 18.301 0 45 27 2 0 0 0 0.58466 1 9006 9006 1.1933 0 1 1415400 77351 9675 51716 52824 90023 90023 -0.028026950991034028 YFGLTRPEL 9 Unmodified _YFGLTRPEL_ 0 0 0 REV__ENST00000324822.15_1_17:7293318-7293747:-|nuORF REV__ENST00000324822.15_1_17:7293318-7293747:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2955322265625 2 548.295299 1094.57605 0.1014 5.5595E-05 0.90231 0.00049473 1.0037 0.00055033 548.2959126859869 12.276 0.37608 9.7942 9.677 10.053 -2.482 305 140 3 0 0 0 0.55775 1 6328 6328 3.9444 2.1002 1 9442800 + 77352 25539 51717 52825 90024 90024 0.03254029477329823 YFGMDMEQV 9 Unmodified _YFGMDMEQV_ 0 0 0 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 REV__nc|ENSG00000154134|Q96MS0-2|ROBO3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8231201171875 3 373.821032 1118.44127 NaN NaN NaN NaN NaN NaN NaN 56.832 1 56.763 56.263 57.263 -0.068737 0 0 0 0.85737 1 30923 30923 0.26902 0 1 + 77353 21209 51718 52826 90025 90025 -0.11321535051115461 YFGSAQVLF 9 Unmodified _YFGSAQVLF_ 0 0 0 ENST00000599652.5_1_19:49969097-49972327:+|nuORF ENST00000599652.5_1_19:49969097-49972327:+|nuORF ENST00000599652.5_1_19:49969097-49972327:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2626953125 2 516.263468 1030.51238 0.52285 0.00026993 0.38601 0.00019928 0.90887 0.00046921 516.2633592000967 78.867 0.27011 78.922 78.835 79.105 0.054977 16 10 2 0 0 0 0.28047 1 43604 43604 18.135 0 1 1474400 77354 15792 51719 52827 90026 90026 -0.0016533095979411883 YFGVKIAMYFA 11 Unmodified _YFGVKIAMYFA_ 0 0 0 ENSG00000074855|ENST00000159087|ANO8;nc|ENSG00000074855|Q9HCE9-2|ANO8 ENSG00000074855|ENST00000159087|ANO8 ENSG00000074855|ENST00000159087|ANO8 MSMS AL20221201_MKP_PDAC_01 4 655.3350830078125 2 655.33611 1308.65767 NaN NaN NaN NaN NaN NaN NaN 93.929 1 87.753 87.253 88.253 -6.1757 0 0 0 0.84159 1 62206 62206 10.074 1.3285 1 77355 1137 51720 52828 90027 90027 0.01568388844907531 YFHDRVASF 9 Unmodified _YFHDRVASF_ 0 0 0 ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS ENSG00000164654|ENST00000340080|MIOS ENSG00000164654|ENST00000340080|MIOS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 381.1854248046875 3 381.185691 1140.53524 -0.40938 -0.00015605 0.33013 0.00012584 -0.079248 -3.0208E-05 381.18585393200556 36.623 0.1974 36.373 36.253 36.45 -0.2497 23 8 4 0 0 0 0.14594 1 19202 19202 21.799 14.762 1 9327200 77356 7223 51721 52829 90028 90028 -0.029403118423033447 YFHDRVASF 9 Unmodified _YFHDRVASF_ 0 0 0 ENSG00000164654|ENST00000340080|MIOS;nc|ENSG00000164654|Q9NXC5-2|MIOS ENSG00000164654|ENST00000340080|MIOS ENSG00000164654|ENST00000340080|MIOS MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.1859741210938 3 381.185691 1140.53524 1.0428 0.00039751 0.76426 0.00029132 1.8071 0.00068883 381.1861010333253 41.202 0.36757 36.594 36.371 36.738 -4.6079 59 22 4 0 0 0 0.18144 2 24628 24628;24768 23.801 10.928 1 24146000 77357 7223 51721 52829 90029;90030 90029 -0.029403118423033447 YFHIASIYPW 10 Unmodified _YFHIASIYPW_ 0 0 0 REV__ENST00000517439.1_1_8:74893396-74893462:+|nuORF REV__ENST00000517439.1_1_8:74893396-74893462:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8857727050781 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 81.896 1 81.956 81.456 82.456 0.059929 0 0 0 0.99897 1 45291 45291 0.77653 0 1 + 77358 28224 51722 52830 90031 90031 -0.002097085972536661 YFHLWTRQL 9 Unmodified _YFHLWTRQL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENST00000581226.1_1_18:2694653-2697144:+|nuORF ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8930969238281 3 421.892619 1262.65603 0.78438 0.00033092 -0.089349 -3.7696E-05 0.69503 0.00029323 421.89267238930364 57.897 0.27607 57.831 57.694 57.97 -0.066036 30 13 3 0 0 0 0.032796 1 31516 31516 42.312 24.449 1 4472800 77359 1980 51723 52831 90032 90032 0.035205158711505646 YFHSMNHL 8 Unmodified _YFHSMNHL_ 0 0 0 REV__ENST00000489831.1_1_2:225672330-225672471:-|nuORF REV__ENST00000489831.1_1_2:225672330-225672471:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7387084960938 2 524.737094 1047.45964 0.1116 5.8559E-05 -0.12533 -6.5766E-05 -0.013735 -7.2071E-06 524.7371376616371 65.273 0.7981 64.789 64.491 65.289 -0.48428 64 36 2 0 0 0 0.75262 1 35598 35598 12.532 3.9383 1 2957300 + 77360 27870 51724 52832 90033 90033 -0.062196122942168586 YFHVHGGIEF 10 Unmodified _YFHVHGGIEF_ 0 0 0 ENSG00000151687|ENST00000684021|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;nc|ENSG00000151687|Q7Z5J8-4|ANKAR;nc|ENSG00000151687|Q7Z5J8-3|ANKAR ENSG00000151687|ENST00000684021|ANKAR ENSG00000151687|ENST00000684021|ANKAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2901000976562 2 603.290548 1204.56654 0.41601 0.00025097 2.326 0.0014033 2.742 0.0016543 603.2898134497086 59.912 1.1113 53.797 53.496 54.607 -6.1147 255 60 6 0 0 0 0.19662 1 38617 38617 34.102 1.797 1 1095700000 77361 6135 51725 52833 90034 90034 -0.027557388081731915 YFIADLPHL 9 Unmodified _YFIADLPHL_ 0 0 0 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 ENSG00000149262|ENST00000534064|INTS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.794189453125 2 544.792392 1087.57023 1.2669 0.00069019 1.5577 0.00084861 2.8246 0.0015388 544.7918099429319 96.626 0.25008 90.45 90.337 90.587 -6.1757 32 14 4 0 0 0 0.019979 1 64043 64043 63.563 32.926 1 15992000 77362 5997 51726 52834 90035 90035 0.0299493096565584 YFIAQLTPL 9 Unmodified _YFIAQLTPL_ 0 0 0 REV__nc|ENSG00000135362|Q6MZQ0-4|PRR5L REV__nc|ENSG00000135362|Q6MZQ0-4|PRR5L MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3030395507812 2 533.302593 1064.59063 0.61682 0.00032895 0.14161 7.5519E-05 0.75842 0.00040447 533.3025638373273 78.143 1.3391 71.967 70.899 72.238 -6.1757 138 77 2 0 0 0 0.1773 1 50777 50777 25.399 1.3787 1 22981000 + 77363 20057 51727 52835 90036 90036 0.060921016254724236 YFIDYYWQKRP 11 Unmodified _YFIDYYWQKRP_ 0 0 0 ENST00000504156.5_1_5:140053622-140053814:-|nuORF ENST00000504156.5_1_5:140053622-140053814:-|nuORF ENST00000504156.5_1_5:140053622-140053814:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 789.890625 2 789.890626 1577.7667 NaN NaN NaN NaN NaN NaN NaN 93.328 1 93.328 92.828 93.828 0 0 0 0 0.9435 1 51599 51599 0 0 1 77364 14487 51728 52836 90037 90037 0.0009269106874398858 YFIHYNREGA 10 Unmodified _YFIHYNREGA_ 0 0 0 REV__ENSG00000144821|ENST00000693548|MYH15 REV__ENSG00000144821|ENST00000693548|MYH15 MSMS AL20221201_MKP_PDAC_01 4 635.3063354492188 2 635.304187 1268.59382 NaN NaN NaN NaN NaN NaN NaN 22.457 1 19.678 19.178 20.178 -2.7784 0 0 0 0.96627 1 12079 12079 4.3292 0.73274 1 + 77365 20738 51729 52837 90038 90038 -0.029732552678296997 YFIKKCEKC 9 Unmodified _YFIKKCEKC_ 0 0 0 REV__nc|ENSG00000175395|P17030-2|ZNF25 REV__nc|ENSG00000175395|P17030-2|ZNF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.8627624511719 3 387.864684 1160.57222 1.2067 0.00046805 -1.3871 -0.00053799 -0.18034 -6.9946E-05 387.8638666320995 39.485 0.4552 35.034 34.811 35.267 -4.4509 91 27 4 0 0 0 0.49272 1 23364 23364 4.897 0.36815 1 205800000 + 77366 22869 51730 52838 90039 90039 -0.001640996124024241 YFIKSPPSQLF 11 Unmodified _YFIKSPPSQLF_ 0 0 0 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7-1|PLEKHS1;ENSG00000148735|ENST00000694986|PLEKHS1;nc|ENSG00000148735|Q5SXH7-4|PLEKHS1;nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1;nc|ENSG00000148735|Q5SXH7|PLEKHS1 nc|ENSG00000148735|Q5SXH7-2|PLEKHS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 663.8590698242188 2 663.858264 1325.70197 0.84636 0.00056186 0.089894 5.9677E-05 0.93625 0.00062154 663.8582786172616 68.422 0.30336 68.447 68.318 68.621 0.025146 33 14 3 0 0 0 0.06459 1 37586 37586 47.732 31.583 1 2300300 77367 5961;16260 51731 52839 90040 90040 0.0521511626272968 YFILNSSCLRL 11 Carbamidomethyl (C) _YFILNSSC(Carbamidomethyl (C))LRL_ YFILNSSC(1)LRL YFILNSSC(97)LRL 0 1 0 nc|ENSG00000186635|Q96P48-5|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72396711-72407721:-|nuORF;ENST00000544958.5_1_11:72404190-72406109:-|nuORF nc|ENSG00000186635|Q96P48-5|ARAP1 nc|ENSG00000186635|Q96P48-5|ARAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 693.3666381835938 2 693.36593 1384.71731 0.83119 0.00057632 0.30228 0.00020959 1.1335 0.00078591 693.3660016101531 95.866 0.20072 89.69 89.584 89.785 -6.1757 16 11 2 0 0 0 4.2801E-06 1 63513 63513 96.936 70.667 1 5174000 77368 9489 51732 52840 90041 90041 882 0.04033659788296973 YFILRNIHTF 10 Unmodified _YFILRNIHTF_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 441.911865234375 3 441.91179 1322.71354 1.1948 0.000528 0.67092 0.00029649 1.8657 0.00082449 441.9116364761777 91.655 0.21594 85.48 85.351 85.567 -6.1757 19 11 3 0 0 0 0.1942 1 60614 60614 29.437 15.918 1 6902500 77369 4951 51733 52841 90042 90042 0.06509358076732497 YFINRSWEW 9 Unmodified _YFINRSWEW_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8098754882812 2 650.809105 1299.60366 0.59606 0.00038792 -1.1271 -0.00073354 -0.53107 -0.00034562 650.808383880177 72.091 0.30064 72.13 71.974 72.275 0.039024 40 14 3 0 0 0 0.013609 1 39652 39652 70.332 44.933 1 22856000 77370 885 51734 52842 90043 90043 -0.03416067262423894 YFINRSWEW 9 Unmodified _YFINRSWEW_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.8091430664062 2 650.809105 1299.60366 0.7685 0.00050015 -0.29414 -0.00019143 0.47436 0.00030872 650.8089663129931 90.344 0.47091 84.169 83.918 84.389 -6.1757 65 27 3 0 0 0 9.232E-11 2 59566 59566;59699 176.84 129.09 1 19943000 77371 885 51734 52842 90044;90045 90044 -0.03416067262423894 YFIPATGHSL 10 Unmodified _YFIPATGHSL_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.8007202148438 2 553.287474 1104.5604 0.35056 0.00019396 -0.83627 -0.0004627 -0.48571 -0.00026874 553.2858990283053 54.252 0.1736 53.785 53.667 53.841 -0.46664 12 8 2 0 0 0 0.22941 1 29354 29354 13.906 0 1 1283800 77372 9280;15721 51735 52843 90046 90046 0.012297429602767807 YFIPATGHSL 10 Unmodified _YFIPATGHSL_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 553.28662109375 2 553.287474 1104.5604 -0.22377 -0.00012381 -0.58275 -0.00032243 -0.80653 -0.00044624 553.7884546062013 53.695 0.5227 53.632 53.402 53.924 -0.063423 43 32 2 0 0 0 0.02987 3 29062 29062;29101;29186 68.081 15.812 1 8207800 77373 9280;15721 51735 52843 90047;90048;90049 90047 0.012297429602767807 YFIPATGHSL 10 Unmodified _YFIPATGHSL_ 0 0 0 nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF nc|ENSG00000184640|Q9UHD8-7|SEPTIN9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 553.2863159179688 2 553.287474 1104.5604 0.89347 0.00049435 1.0123 0.00056009 1.9058 0.0010544 553.2877523456858 59.652 0.31248 53.537 53.337 53.65 -6.1147 28 16 2 0 0 0 0.0020965 1 38276 38276 108 19.093 1 39169000 77374 9280;15721 51735 52843 90050 90050 0.012297429602767807 YFIPEFNLF 9 Unmodified _YFIPEFNLF_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2986450195312 2 595.30005 1188.58555 0.27032 0.00016092 -0.63263 -0.0003766 -0.36231 -0.00021569 595.2995523716901 101.83 0.10001 95.654 95.6 95.7 -6.1757 13 6 3 0 0 0 0.042911 1 68344 68344 48.346 25.61 1 80142000 77375 7194 51736 52844 90051 90051 -0.0012020223716717737 YFIRKNRQF 9 Unmodified _YFIRKNRQF_ 0 0 0 ENST00000504876.2_1_5:59817018-59817348:+|nuORF ENST00000504876.2_1_5:59817018-59817348:+|nuORF ENST00000504876.2_1_5:59817018-59817348:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 424.5724182128906 3 424.571768 1270.69348 NaN NaN NaN NaN NaN NaN NaN 91.909 1 85.734 85.234 86.234 -6.1757 0 0 0 0.84369 1 60763 60763 1.1933 0.41681 1 77376 14504 51737 52845 90052 90052 0.06895607136789295 YFISHVLAF 9 Unmodified _YFISHVLAF_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.7955322265625 2 548.794935 1095.57532 0.2544 0.00013961 1.0245 0.00056221 1.2788 0.00070183 548.7953901362727 79.445 0.30891 79.5 79.363 79.672 0.054977 36 11 4 0 0 0 0.010877 2 43890 43890;43993 77.984 39.833 1 16084000 77377 8150 51738 52846 90053;90054 90053 0.031352348282553066 YFISHVLAF 9 Unmodified _YFISHVLAF_ 0 0 0 ENSG00000171848|ENST00000304567|RRM2;nc|ENSG00000171848|P31350-2|RRM2;ENST00000459969.5_1_2:10262865-10264033:+|nuORF;ENST00000491447.1_1_2:10262886-10264978:+|nuORF ENSG00000171848|ENST00000304567|RRM2 ENSG00000171848|ENST00000304567|RRM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.795166015625 2 548.794935 1095.57532 1.2105 0.00066432 -0.10566 -5.7985E-05 1.1048 0.00060633 548.7949333260748 98.04 0.21986 91.864 91.749 91.968 -6.1757 39 13 4 0 0 0 0.012148 1 64963 64963 74.423 38.379 1 85017000 77378 8150 51738 52846 90055 90055 0.031352348282553066 YFISPGSL 8 Unmodified _YFISPGSL_ 0 0 0 ENST00000521420.5_1_5:156820382-156820556:+|nuORF ENST00000521420.5_1_5:156820382-156820556:+|nuORF ENST00000521420.5_1_5:156820382-156820556:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 442.2339172363281 2 442.231636 882.448719 NaN NaN NaN NaN NaN NaN NaN 56.101 1 56.101 55.601 56.601 0 0 0 0 0.94749 1 31194 31194 11.114 4.7604 1 77379 14742 51739 52847 90056 90056 0.0027930860313745143 YFKDFWGFS 9 Unmodified _YFKDFWGFS_ 0 0 0 ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF ENST00000396136.6_1_15:58889748-58968450:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.277587890625 2 598.7742 1195.53385 0.38345 0.0002296 0.97408 0.00058325 1.3575 0.00081285 599.27663073873 99.297 0.17252 99.139 99.036 99.208 -0.1575 14 5 4 0 0 0 0.21893 1 54237 54237 0.52476 0 1 1672300 77380 12784 51740 52848 90057 90057 -0.056099459310644306 YFKDTHPKF 9 Unmodified _YFKDTHPKF_ 0 0 0 ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3 ENST00000470741.1_1_22:43015781-43027088:-|nuORF ENST00000470741.1_1_22:43015781-43027088:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.8695678710938 3 394.869591 1181.58694 0.23948 9.4565E-05 0.20528 8.1061E-05 0.44477 0.00017563 394.8696537045087 25.204 0.18455 25.187 25.07 25.254 -0.017006 14 7 3 0 0 0 0.2324 1 12906 12906 14.957 7.8554 1 8343000 77381 1778 51741 52849 90058 90058 0.003414318515751802 YFKDTHPKF 9 Unmodified _YFKDTHPKF_ 0 0 0 ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3 ENST00000470741.1_1_22:43015781-43027088:-|nuORF ENST00000470741.1_1_22:43015781-43027088:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.8697814941406 3 394.869591 1181.58694 0.63586 0.00025108 -0.40733 -0.00016084 0.22853 9.0239E-05 394.8696121913448 27.968 0.32759 24.82 24.656 24.983 -3.1482 40 17 3 0 0 0 0.30202 1 15598 15598 16.566 5.7664 1 31438000 77382 1778 51741 52849 90059 90059 0.003414318515751802 YFKITLYGRT 10 Unmodified _YFKITLYGRT_ 0 0 0 nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2;ENST00000470902.5_1_9:130912815-130915395:+|nuORF;ENST00000488391.5_1_9:130913785-130915395:+|nuORF nc|ENSG00000148346|P80188-2|LCN2 nc|ENSG00000148346|P80188-2|LCN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.3489379882812 2 631.350606 1260.68666 0.21373 0.00013494 1.2989 0.00082006 1.5126 0.00095499 631.8525762023468 76.188 0.40555 76.236 76.086 76.492 0.047943 42 16 3 0 0 0 0.11322 1 42009 42009 60.074 16.302 1 23370000 77383 5923 51742 52850 90060 90060 0.0667424946555002 YFKKPLNIYF 10 Unmodified _YFKKPLNIYF_ 0 0 0 nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 nc|ENSG00000033627|Q93050-1|ATP6V0A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.9173889160156 3 444.916541 1331.72779 1.3379 0.00059524 0.39316 0.00017493 1.731 0.00077016 445.25119887566683 89.223 0.42397 83.047 82.815 83.239 -6.1757 40 23 2 0 0 0 0.30444 2 58987 58852;58987 27.223 18.247 1 24271000 77384 602 51743 52851 90061;90062 90062 0.0752001050502713 YFKKYVDIF 9 Unmodified _YFKKYVDIF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2218017578125 3 408.221742 1221.6434 -0.061649 -2.5166E-05 0.49006 0.00020006 0.42842 0.00017489 408.22193169888635 55.147 0.35936 55.078 54.939 55.298 -0.068737 49 17 4 0 0 0 0.1773 1 29940 29940 18.373 12.59 1 20277000 77385 10367 51744 52852 90063 90063 0.04144059688269408 YFKKYVDIF 9 Unmodified _YFKKYVDIF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8292236328125 2 611.828975 1221.6434 0.43317 0.00026503 0.28285 0.00017306 0.71602 0.00043808 611.8293149931774 55.133 0.23813 55.064 54.98 55.218 -0.068737 27 11 3 0 0 0 0.0085164 1 29956 29956 99.799 67.493 1 9364800 77386 10367 51744 52852 90064 90064 0.04144059688269408 YFKKYVDIF 9 Unmodified _YFKKYVDIF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2220458984375 3 408.221742 1221.6434 1.2013 0.00049038 -0.98668 -0.00040278 0.21458 8.7596E-05 408.2216444051882 87.115 0.94337 80.94 80.588 81.531 -6.1757 119 51 4 0 0 0 0.23158 3 57293 57293;57413;57553 19.362 11.086 1 23855000 77387 10367 51744 52852 90065;90066;90067 90065 0.04144059688269408 YFKKYVDIF 9 Unmodified _YFKKYVDIF_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8289184570312 2 611.828975 1221.6434 1.0283 0.00062915 -0.32765 -0.00020047 0.70067 0.00042869 611.8286783490696 87.085 0.55791 80.91 80.605 81.163 -6.1757 46 30 2 0 0 0 0.017075 2 57414 57298;57414 66.457 37.375 1 17668000 77388 10367 51744 52852 90068;90069 90069 0.04144059688269408 YFKQPSYI 8 Unmodified _YFKQPSYI_ 0 0 0 REV__ENSG00000218819|ENST00000405799|TDRD15 REV__ENSG00000218819|ENST00000405799|TDRD15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.2713623046875 2 523.271293 1044.52803 1.1395 0.00059628 -0.41044 -0.00021477 0.72908 0.00038151 523.2711824971456 61.197 0.78761 55.049 54.778 55.565 -6.1478 86 40 4 0 0 0 0.28922 1 39476 39476 56.541 0.36423 1 174330000 + 77389 24353 51745 52853 90070 90070 0.007549555572722966 YFKSHSWI 8 Unmodified _YFKSHSWI_ 0 0 0 REV__ENSG00000105877|ENST00000409508|DNAH11 REV__ENSG00000105877|ENST00000409508|DNAH11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.2666625976562 2 534.269084 1066.52362 NaN NaN NaN NaN NaN NaN NaN 68.077 1 68.077 67.577 68.577 0 0 0 0 0.97444 1 37958 37958 2.8892 0 1 + 77390 18469 51746 52854 90071 90071 -0.006985088656165317 YFLDHPIVSV 10 Unmodified _YFLDHPIVSV_ 0 0 0 REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF REV__ENST00000556454.1_1_14:95660863-95677170:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2733764648438 2 595.316232 1188.61791 0.43611 0.00025962 -0.25605 -0.00015243 0.18006 0.00010719 595.316296246854 60.108 0.19696 60.108 60.003 60.199 0 11 8 2 0 0 0 0.23745 1 33466 33466 5.7319 0.83484 1 1316000 + 77391 22068 51747 52855 90072 90072 0.03114585165826611 YFLDKIDVI 9 Unmodified _YFLDKIDVI_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.3129272460938 2 563.313158 1124.61176 -0.70241 -0.00039568 0.91515 0.00051552 0.21274 0.00011984 563.3137497818143 77.881 0.24236 77.399 77.189 77.432 -0.4826 20 11 2 0 0 0 0.12357 1 42589 42589 39.95 5.0176 1 4438100 77392 16063;14003 51748 52856 90073 90073 0.054440669343193804 YFLDKIDVI 9 Unmodified _YFLDKIDVI_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.31494140625 2 563.313158 1124.61176 NaN NaN NaN NaN NaN NaN NaN 77.273 1 77.323 76.823 77.823 0.05011 0 0 0 0.40636 1 42645 42645 26.268 2.4784 1 77393 16063;14003 51748 52856 90074 90074 0.054440669343193804 YFLDKIDVI 9 Unmodified _YFLDKIDVI_ 0 0 0 ENST00000477931.5_1_20:57464155-57485881:+|nuORF;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;nc|ENSG00000087460|P63092-3|GNAS;nc|ENSG00000087460|P63092-2|GNAS;ENSG00000087460|ENST00000371085|GNAS;nc|ENSG00000087460|P63092-4|GNAS;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS ENST00000477931.5_1_20:57464155-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS nc|ENSG00000087460|Q5JWF2-2|GNAS MSMS AL20221201_MKP_PDAC_01 4 563.312744140625 2 563.313158 1124.61176 NaN NaN NaN NaN NaN NaN NaN 95.578 1 89.403 88.903 89.903 -6.1757 0 0 0 0.20325 1 63311 63311 38.615 20.48 1 77394 16063;14003 51748 52856 90075 90075 0.054440669343193804 YFLEHLAF 8 Unmodified _YFLEHLAF_ 0 0 0 ENST00000415995.5_1_3:48636563-48647036:-|nuORF;ENSG00000010256|ENST00000203407|UQCRC1;ENST00000467690.5_1_3:48641664-48646729:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF ENST00000415995.5_1_3:48636563-48647036:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2667846679688 2 520.26601 1038.51747 0.47413 0.00024668 1.2333 0.00064166 1.7075 0.00088834 520.2671649664451 46.033 0.23958 46.005 45.905 46.145 -0.028015 18 10 3 0 0 0 0.67481 1 24771 24771 19.439 4.6007 1 1659400 77395 416 51749 52857 90076 90076 -0.0002502709714917728 YFLEMQEKLER 11 Unmodified _YFLEMQEKLER_ 0 0 0 ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF ENSG00000099308|ENST00000687212|MAST3 ENSG00000099308|ENST00000687212|MAST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 495.9168395996094 3 495.918393 1484.73335 0.82886 0.00041105 0.27824 0.00013798 1.1071 0.00054903 496.2541333716004 69.51 1.2947 63.335 62.633 63.928 -6.1757 129 71 3 0 0 0 0.58219 2 45160 45160;45316 9.7643 3.1408 1 57419000 77396 1692 51750 52858 90077;90078 90077 0.010373212345484717 YFLETSKRL 9 Unmodified _YFLETSKRL_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.2166137695312 3 386.21688 1155.62881 -0.015471 -5.9752E-06 0.18973 7.3278E-05 0.17426 6.7303E-05 386.2167390310841 39.278 0.17667 38.991 38.925 39.101 -0.28687 11 8 2 0 0 0 0.11005 1 20732 20732 32.037 22.494 1 2562100 77397 9152 51751 52859 90079 90079 0.057219875401415266 YFLETSKRL 9 Unmodified _YFLETSKRL_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.2178955078125 3 386.21688 1155.62881 0.14661 5.6623E-05 0.66608 0.00025725 0.81269 0.00031388 386.217224505425 38.911 0.24231 38.923 38.779 39.021 0.011456 17 11 2 0 0 0 0.331 1 20697 20697 15.739 2.1238 1 4561000 77398 9152 51751 52859 90080 90080 0.057219875401415266 YFLETSKRL 9 Unmodified _YFLETSKRL_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000398632.3_1_21:42775383-42780157:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2178649902344 3 386.21688 1155.62881 1.0513 0.00040604 0.29669 0.00011459 1.348 0.00052062 386.21773271418823 43.683 0.37074 38.918 38.755 39.126 -4.7648 44 22 3 0 0 0 0.19349 1 26546 26546 23.801 0 1 12248000 77399 9152 51751 52859 90081 90081 0.057219875401415266 YFLFLNNNF 9 Unmodified _YFLFLNNNF_ 0 0 0 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 ENSG00000186105|ENST00000334994|LRRC70 MULTI-MSMS AL20221201_MKP_PDAC_01 4 596.2979736328125 2 596.295299 1190.57605 0.046106 2.7493E-05 0.96639 0.00057625 1.0125 0.00060375 596.2959700808373 38.731 0.68285 34.28 33.992 34.675 -4.4509 121 43 3 0 0 0 0.14602 1 22735 22735 28.487 5.7506 1 68053000 77400 9453 51752 52860 90082 90082 -0.011619705226848964 YFLIIIGFL 9 Unmodified _YFLIIIGFL_ 0 0 0 REV__nc|ENSG00000164038|Q86UD5-2|SLC9B2 REV__nc|ENSG00000164038|Q86UD5-2|SLC9B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.89013671875 3 366.891445 1097.6525 NaN NaN NaN NaN NaN NaN NaN 41.997 1 41.988 41.488 42.488 -0.0088196 0 0 0 0.56093 1 22471 22471 13.906 3.1065 1 + 77401 21853 51753 52861 90083 90083 0.10758453044627458 YFLKGVLVF 9 Unmodified _YFLKGVLVF_ 0 0 0 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.3240966796875 2 543.323328 1084.6321 -0.1703 -9.2529E-05 0.97612 0.00053035 0.80582 0.00043782 543.323868881219 87.073 0.26063 87.131 86.984 87.244 0.05822 22 12 2 0 0 0 0.031062 1 48357 48357 54.774 34.32 1 43825000 77402 590 51754 52862 90084 90084 0.09317282384790815 YFLKILPVF 9 Unmodified _YFLKILPVF_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.8046875 2 570.346803 1138.67905 3.6523 0.0020831 0.89508 0.00051051 4.5474 0.0025936 570.3471355330034 99.485 0.1241 99.449 99.352 99.477 -0.036301 7 4 2 0 0 0 0.21798 1 55216 55216 2.3027 0 1 735100 + 77403 24033 51755 52863 90085 90085 0.11526141935928536 YFLMRNNF 8 Unmodified _YFLMRNNF_ 0 0 0 ENSG00000088387|ENST00000682017|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 ENSG00000088387|ENST00000682017|DOCK9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7678833007812 2 552.768394 1103.52224 0.20123 0.00011123 -0.7639 -0.00042226 -0.56267 -0.00031102 553.2688217267129 45.701 0.12304 45.377 45.287 45.41 -0.32425 9 6 2 0 0 0 0.67481 1 24408 24408 19.439 0 1 12030000 77404 1489 51756 52864 90086 90086 -0.025384662260421464 YFLQHLVGPK 10 Unmodified _YFLQHLVGPK_ 0 0 0 ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A ENSG00000110344|ENST00000252108|UBE4A ENSG00000110344|ENST00000252108|UBE4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.2295532226562 3 401.229119 1200.66553 0.2407 9.6578E-05 -0.060434 -2.4248E-05 0.18027 7.233E-05 401.2295232366703 85.441 0.72819 79.265 78.837 79.566 -6.1757 87 44 3 0 0 0 0.52888 2 56349 56084;56349 12.873 7.9756 1 83190000 77405 2714 51757 52865 90087;90088 90088 0.07322284156703063 YFLQRHELL 9 Unmodified _YFLQRHELL_ 0 0 0 ENSG00000072786|ENST00000176763|STK10;ENST00000519269.1_1_5:171484250-171488167:-|nuORF ENSG00000072786|ENST00000176763|STK10 ENSG00000072786|ENST00000176763|STK10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.892822265625 3 406.892507 1217.65569 0.00023076 9.3894E-08 0.89048 0.00036233 0.89071 0.00036242 406.8928098215591 48.989 0.27969 48.945 48.791 49.07 -0.04369 30 13 3 0 0 0 0.026499 1 26437 26437 57.249 30.026 1 4595800 77406 1092 51758 52866 90089 90089 0.055570961513240036 YFLQRHELL 9 Unmodified _YFLQRHELL_ 0 0 0 ENSG00000072786|ENST00000176763|STK10;ENST00000519269.1_1_5:171484250-171488167:-|nuORF ENSG00000072786|ENST00000176763|STK10 ENSG00000072786|ENST00000176763|STK10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 406.892507 1217.65569 0.60909 0.00024783 0.51781 0.00021069 1.1269 0.00045853 407.2267934336303 49.314 0.2224 48.943 48.82 49.043 -0.37172 -0.001228 -0.00035664 NaN 57.249 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1065900 77407 1092 51758 52866 0.055570961513240036 YFLSDGLYVP 10 Unmodified _YFLSDGLYVP_ 0 0 0 ENSG00000082213|ENST00000325366|C5orf22 ENSG00000082213|ENST00000325366|C5orf22 ENSG00000082213|ENST00000325366|C5orf22 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.8594360351562 2 587.294965 1172.57538 1.2986 0.00076266 -1.9554 -0.0011484 -0.65678 -0.00038572 587.7952847574558 71.168 0.23351 71.207 71.068 71.301 0.039024 14 9 2 0 0 0 0.23489 1 39172 39172 7.9102 0 1 786790 77408 1342 51759 52867 90090 90090 -0.004008099623888484 YFLSSVKG 8 Unmodified _YFLSSVKG_ 0 0 0 REV__ENSG00000197125|ENST00000642064|OR8B8 REV__ENSG00000197125|ENST00000642064|OR8B8 MSMS AL20221201_MKP_PDAC_01 4 450.7471923828125 2 450.744911 899.475269 NaN NaN NaN NaN NaN NaN NaN 68.756 1 62.58 62.08 63.08 -6.1757 0 0 0 0.88073 1 44892 44892 19.439 3.6708 1 + 77409 23898 51760 52868 90091 90091 0.021509974944819987 YFLTTRQTL 9 Unmodified _YFLTTRQTL_ 0 0 0 ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5 ENST00000570005.5_1_16:2732549-2747193:+|nuORF ENST00000570005.5_1_16:2732549-2747193:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.8136596679688 2 571.813856 1141.61316 0.35286 0.00020177 -0.16251 -9.2928E-05 0.19035 0.00010885 571.8137073784533 50.911 0.23538 50.857 50.728 50.963 -0.053871 26 11 3 0 0 0 0.023481 1 27524 27524 60.074 38.327 1 5167500 77410 7691 51761 52869 90092 90092 0.048017010230978485 YFMPNRLFF 9 Oxidation (M) _YFM(Oxidation (M))PNRLFF_ YFM(1)PNRLFF YFM(44)PNRLFF 0 0 1 nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 nc|ENSG00000066230|P48764-2|SLC9A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.8043212890625 2 625.804977 1249.5954 0.4503 0.0002818 -0.15404 -9.64E-05 0.29626 0.0001854 625.8045374537838 78.124 0.31593 78.176 78.011 78.327 0.052452 21 12 2 0 0 0 0.052168 1 43139 43139 44.407 30.899 1 2277800 77411 930 51762 52870 90093 90093 144 -0.01941337503444629 YFMVFKQWRLE 11 Unmodified _YFMVFKQWRLE_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2677612304688 3 516.267357 1545.78024 0.091652 4.7317E-05 0.58173 0.00030033 0.67338 0.00034765 516.2677840660111 85.287 0.7589 79.111 78.72 79.479 -6.1757 115 46 3 0 0 0 0.64126 1 56106 56106 9.2438 0.49199 1 31799000 + 77412 23294 51763 52871 90094 90094 0.029182255763089415 YFNNKLRTF 9 Unmodified _YFNNKLRTF_ 0 0 0 REV__ENST00000264313.10_1_4:48424109-48424223:+|nuORF REV__ENST00000264313.10_1_4:48424109-48424223:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.2293701171875 3 401.548741 1201.62439 -0.09306 -3.7368E-05 -0.25513 -0.00010245 -0.34819 -0.00013981 401.5486023352041 33.695 0.21211 33.724 33.625 33.837 0.028934 16 8 2 0 0 0 0.21806 1 17799 17799 2.7352 0.23671 1 4228100 + 77413 25068 51764 52872 90095 90095 0.03164523117220597 YFNPHTVTL 9 Unmodified _YFNPHTVTL_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2794189453125 2 546.279649 1090.54475 0.058345 3.1873E-05 2.8201 0.0015405 2.8784 0.0015724 546.2804636412761 51.707 0.17842 51.648 51.553 51.731 -0.058914 15 8 2 0 0 0 0.12841 1 28013 28013 30.225 13.283 1 1568200 77414 7802 51765 52873 90096 90096 0.003094564432331026 YFNPHTVTL 9 Unmodified _YFNPHTVTL_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2788696289062 2 546.279649 1090.54475 0.89817 0.00049065 1.1376 0.00062147 2.0358 0.0011121 546.2795762948193 57.396 0.27638 51.368 51.219 51.496 -6.0275 22 14 2 0 0 0 0.0082475 1 36700 36700 92.653 48.881 1 20646000 77415 7802 51765 52873 90097 90097 0.003094564432331026 YFNPHTVTL 9 Unmodified _YFNPHTVTL_ 0 0 0 ENST00000567039.1_1_15:43620629-43622752:-|nuORF;ENSG00000168806|ENST00000305641|LCMT2 ENST00000567039.1_1_15:43620629-43622752:-|nuORF ENST00000567039.1_1_15:43620629-43622752:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 546.279649 1090.54475 0.25568 0.00013967 2.2975 0.0012551 2.5532 0.0013948 546.28025142804 52.041 0.19661 51.607 51.512 51.709 -0.43367 0.066161 0.00053091 NaN 92.653 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 3255500 77416 7802 51765 52873 0.003094564432331026 YFNQEKSEKF 10 Unmodified _YFNQEKSEKF_ 0 0 0 REV__ENSG00000146476|ENST00000367294|ARMT1 REV__ENSG00000146476|ENST00000367294|ARMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.8816528320312 3 440.547065 1318.61937 0.55969 0.00024657 -0.97436 -0.00042925 -0.41467 -0.00018268 440.88093713271746 53.596 0.26606 53.596 53.439 53.705 0 27 12 3 0 0 0 0.65773 1 29680 29680 10.315 2.8382 1 6247100 + 77417 20838 51766 52874 90098 90098 -0.02719825536087228 YFNQEKSEKF 10 Unmodified _YFNQEKSEKF_ 0 0 0 REV__ENSG00000146476|ENST00000367294|ARMT1 REV__ENSG00000146476|ENST00000367294|ARMT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 440.547065 1318.61937 0.55969 0.00024657 -0.97436 -0.00042925 -0.41467 -0.00018268 440.88093713271746 53.596 0.26606 53.596 53.439 53.705 0 -0.038426 -0.00062768 NaN 10.315 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 6247100 + 77418 20838 51766 52874 -0.02719825536087228 YFNQEKSEKF 10 Unmodified _YFNQEKSEKF_ 0 0 0 REV__ENSG00000146476|ENST00000367294|ARMT1 REV__ENSG00000146476|ENST00000367294|ARMT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 440.547065 1318.61937 0.21209 9.3433E-05 0.35098 0.00015462 0.56307 0.00024806 440.54686044083707 54.14 0.23648 53.673 53.547 53.784 -0.46664 0.038426 0.0011239 NaN 10.315 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3351200 + 77419 20838 51766 52874 -0.02719825536087228 YFNVGQQAQI 10 Unmodified _YFNVGQQAQI_ 0 0 0 nc|ENSG00000134532|P35711-3|SOX5;nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5 nc|ENSG00000134532|P35711-3|SOX5 nc|ENSG00000134532|P35711-3|SOX5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.2939453125 2 584.293288 1166.57202 NaN NaN NaN NaN NaN NaN NaN 50.007 1 49.614 49.114 50.114 -0.3923 0 0 0 0.7417 1 26915 26915 14.838 0 1 77420 4618 51767 52875 90099 90099 -0.004600600163939816 YFPAWCLVY 9 Unmodified _YFPAWCLVY_ 0 0 0 REV__ENSG00000101292|ENST00000678254|PROKR2 REV__ENSG00000101292|ENST00000678254|PROKR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2760620117188 2 581.275521 1160.53649 0.36864 0.00021428 -0.53683 -0.00031205 -0.16819 -9.7764E-05 581.2751841505138 72.662 0.2874 72.662 72.511 72.799 0 19 13 2 0 0 0 0.3554 1 40464 40464 14.582 2.0501 1 972030 + 77421 18156 51768 52876 90100 90100 -0.03735813797766241 YFPDKVALL 9 Unmodified _YFPDKVALL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185212881-185213145:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3033447265625 2 533.302593 1064.59063 0.31227 0.00016653 0.13921 7.424E-05 0.45148 0.00024078 533.3025953729027 68.612 0.58847 68.131 67.877 68.465 -0.48071 82 26 4 0 0 0 0.16226 2 37411 37411;37622 26.884 8.7487 1 22091000 77422 7092 51769 52877 90101;90102 90101 0.060921016254724236 YFPDKVALL 9 Unmodified _YFPDKVALL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185212881-185213145:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.3025512695312 2 533.302593 1064.59063 0.44204 0.00023574 -0.40501 -0.00021599 0.037029 1.9748E-05 533.3023480574016 68.113 0.60139 68.138 67.877 68.479 0.025146 76 29 3 0 0 0 0.12424 1 37332 37332 30.637 4.3684 1 18699000 77423 7092 51769 52877 90103 90103 0.060921016254724236 YFPDKVALL 9 Unmodified _YFPDKVALL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185212881-185213145:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3020629882812 2 533.302593 1064.59063 0.61682 0.00032895 0.14161 7.5519E-05 0.75842 0.00040447 533.3025638373273 78.143 1.3391 71.967 70.899 72.238 -6.1757 138 77 2 0 0 0 0.047788 3 51167 50898;51031;51167 45.7 16.618 1 22981000 77424 7092 51769 52877 90104;90105;90106 90106 0.060921016254724236 YFPDKVALL 9 Unmodified _YFPDKVALL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185212881-185213145:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.302978515625 2 533.302593 1064.59063 0.41321 0.00022036 -0.10692 -5.7018E-05 0.30629 0.00016335 533.3020511417122 78.508 0.8362 72.332 72.22 73.056 -6.1757 82 49 2 0 0 0 0.078314 2 51441 51441;51574 38.176 12.776 1 18607000 77425 7092 51769 52877 90107;90108 90107 0.060921016254724236 YFPDKVALL 9 Unmodified _YFPDKVALL_ 0 0 0 ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A;ENST00000467061.1_1_3:185212881-185213145:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF ENST00000475480.5_1_3:185199046-185216749:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.3024291992188 2 533.302593 1064.59063 NaN NaN NaN NaN NaN NaN NaN 76.396 1 70.22 69.72 70.72 -6.1757 0 0 0 0.074615 1 49969 49969 49.933 9.9757 1 77426 7092 51769 52877 90109 90109 0.060921016254724236 YFPECLNLI 9 Unmodified _YFPECLNLI_ 0 0 0 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2778930664062 2 556.27826 1110.54197 0.78853 0.00043864 -1.192 -0.00066308 -0.40346 -0.00022444 556.2774338504662 99.583 0.1545 93.407 93.306 93.46 -6.1757 15 9 2 0 0 0 0.30562 1 66389 66389 16.942 3.0362 1 34314000 77427 1017 51770 52878 90110 90110 -0.008881350059482429 YFPKKEAVTF 10 Unmodified _YFPKKEAVTF_ 0 0 0 ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA ENSG00000137055|ENST00000397292|PLAA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.3318481445312 2 615.331882 1228.64921 1.2161 0.00074829 -0.55739 -0.00034298 0.65868 0.00040531 615.3311069607431 50.543 0.20046 50.489 50.388 50.589 -0.053871 15 9 2 0 0 0 0.1899 1 27346 27346 34.932 15.675 1 1372900 77428 4894 51771 52879 90111 90111 0.04403158199920654 YFPNSRESF 9 Unmodified _YFPNSRESF_ 0 0 0 REV__ENST00000556044.5_1_14:71060086-71067354:-|nuORF REV__ENST00000556044.5_1_14:71060086-71067354:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7640991210938 2 573.764363 1145.51417 1.0291 0.00059048 0.10274 5.8947E-05 1.1319 0.00064943 573.7640736542994 50.531 0.65834 50.477 50.164 50.823 -0.053871 78 32 3 0 0 0 0.23158 1 27262 27262 20.454 1.1966 1 5693000 + 77429 19944 51772 52880 90112 90112 -0.052763219418238805 YFPPKGYAF 9 Unmodified _YFPPKGYAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2734985351562 2 545.273835 1088.53312 -0.075771 -4.1316E-05 0.30855 0.00016824 0.23278 0.00012693 545.273975885754 54.22 0.60786 54.153 53.672 54.28 -0.066936 54 30 2 0 0 0 0.2001 3 29254 29254;29399;29499 23.148 8.5667 1 4973800 77430 4931;2996;2524 51773 52881 90113;90114;90115 90113 -0.007607405801081768 YFPPKGYAF 9 Unmodified _YFPPKGYAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2694091796875 2 545.273835 1088.53312 -0.0024185 -1.3188E-06 -1.7995 -0.00098123 -1.8019 -0.00098255 545.2724749215478 55.456 0.33874 55.387 55.117 55.456 -0.068737 28 16 3 0 0 0 0.2001 1 30088 30088 23.148 3.7094 1 5456400 77431 4931;2996;2524 51773 52881 90116 90116 -0.007607405801081768 YFPPKGYAF 9 Unmodified _YFPPKGYAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2733154296875 2 545.273835 1088.53312 -0.18426 -0.00010047 -0.25189 -0.00013735 -0.43614 -0.00023782 545.2738624979892 55.595 0.24846 55.526 55.456 55.705 -0.068737 19 12 2 0 0 0 0.2001 1 30188 30188 23.148 3.7094 1 5117600 77432 4931;2996;2524 51773 52881 90117 90117 -0.007607405801081768 YFPPKGYAF 9 Unmodified _YFPPKGYAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.275390625 2 545.273835 1088.53312 0.77697 0.00042366 -1.6129 -0.00087945 -0.8359 -0.00045579 545.2727815003385 59.721 0.32786 53.606 53.337 53.665 -6.1147 19 17 2 0 0 0 0.2001 1 38303 38303 23.148 2.2772 1 22661000 77433 4931;2996;2524 51773 52881 90118 90118 -0.007607405801081768 YFPYKHSY 8 Unmodified _YFPYKHSY_ 0 0 0 chr5:64690814-64694087|129|12.61|0.1|7.02|+|ENST00000509189|SHISAL2B,SHISAL2B;chr5:64694199-64695507|135|18.05|0.13|7.13|+|ENST00000509189|SHISAL2B,SHISAL2B;ENSG00000145642|ENST00000389074|SHISAL2B chr5:64690814-64694087|129|12.61|0.1|7.02|+|ENST00000509189|SHISAL2B,SHISAL2B chr5:64690814-64694087|129|12.61|0.1|7.02|+|ENST00000509189|SHISAL2B,SHISAL2B MSMS AL20221201_MKP_PDAC_01 4 552.7635498046875 2 552.761092 1103.50763 NaN NaN NaN NaN NaN NaN NaN 45.987 1 41.032 40.532 41.532 -4.9549 0 0 0 0.85975 1 28326 28326 20.454 7.9221 1 77434 115 51774 52882 90119 90119 -0.039982151025242274 YFQKCYHF 8 Unmodified _YFQKCYHF_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1719055175781 3 379.172505 1134.49569 0.21272 8.0659E-05 -2.148 -0.00081446 -1.9353 -0.00073381 379.17182158089776 78.868 0.62477 78.382 77.971 78.596 -0.48596 35 25 2 0 0 0 0.80722 1 43190 43190 1.4819 0.41044 1 1189200 77435 1446 51775 52883 90120 90120 -0.06618155117371316 YFQLKRIWRWP 11 Unmodified _YFQLKRIWRWP_ 0 0 0 REV__ENST00000431090.1_1_22:19436394-19436460:+|nuORF REV__ENST00000431090.1_1_22:19436394-19436460:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 796.9440307617188 2 796.94607 1591.87759 0.12943 0.00010315 -0.97184 -0.0007745 -0.84241 -0.00067136 797.4464205576444 87.572 0.23921 87.625 87.507 87.746 0.053352 22 10 3 0 0 0 0.7453 1 48694 48694 0 0 1 16503000 + 77436 26973 51776 52884 90121 90121 0.10532375567481722 YFQLKRIWRWP 11 Unmodified _YFQLKRIWRWP_ 0 0 0 REV__ENST00000431090.1_1_22:19436394-19436460:+|nuORF REV__ENST00000431090.1_1_22:19436394-19436460:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 797.4467163085938 2 796.94607 1591.87759 0.61291 0.00048846 -0.88282 -0.00070356 -0.26991 -0.0002151 796.9453178091916 89.946 0.30137 89.988 89.776 90.077 0.042175 27 10 3 0 0 0 0.7453 1 49996 49996 0 0 1 22037000 + 77437 26973 51776 52884 90122 90122 0.10532375567481722 YFQNTQGLIF 10 Unmodified _YFQNTQGLIF_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.8123779296875 2 615.811313 1229.60807 0.41698 0.00025678 1.2451 0.00076677 1.6621 0.0010236 615.8118293307244 79.776 0.28249 79.831 79.672 79.955 0.05497 26 10 3 0 0 0 0.11755 1 44039 44039 43.858 29.02 1 5507400 77438 7752;4585 51777 52885 90123 90123 0.002453971604609251 YFQNTQGLIF 10 Unmodified _YFQNTQGLIF_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.810791015625 2 615.811313 1229.60807 0.96421 0.00059377 -0.12986 -7.9967E-05 0.83436 0.00051381 615.8108804171417 87.692 0.45335 81.516 81.257 81.71 -6.1757 31 24 2 0 0 0 0.077785 1 57749 57749 51.63 13.656 1 15109000 77439 7752;4585 51777 52885 90124 90124 0.002453971604609251 YFQNTQGLIF 10 Unmodified _YFQNTQGLIF_ 0 0 0 ENSG00000168374|ENST00000303436|ARF4;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF ENSG00000168374|ENST00000303436|ARF4;ENSG00000143761|ENST00000272102|ARF1 ENSG00000143761|ENST00000272102|ARF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 615.811313 1229.60807 1.0525 0.00064816 1.4062 0.00086598 2.4588 0.0015141 616.3128933963262 80.333 0.13024 79.843 79.779 79.91 -0.48932 0.0059157 0.00018613 NaN 43.858 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 240770 77440 7752;4585 51777 52885 0.002453971604609251 YFRALHAL 8 Unmodified _YFRALHAL_ 0 0 0 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENSG00000013288|ENST00000285599|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 nc|ENSG00000013288|Q9Y2E5-2|MAN2B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.781005859375 2 495.779619 989.544686 0.49235 0.0002441 -0.17104 -8.4798E-05 0.32131 0.0001593 495.7807432037215 92.232 0.49909 91.752 91.491 91.991 -0.48092 48 23 3 0 0 0 0.80975 1 50444 50444 0.79363 0 1 474510 77441 469 51778 52886 90125 90125 0.04949501233875253 YFRDGDLVTF 10 Unmodified _YFRDGDLVTF_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.80078125 2 616.800946 1231.58734 0.41497 0.00025596 -1.5487 -0.00095521 -1.1337 -0.00069925 616.8007291384924 63.476 0.33256 62.99 62.816 63.149 -0.48617 36 14 3 0 0 0 0.047829 1 34602 34602 59.368 29.528 1 4997800 77442 9027 51779 52887 90126 90126 -0.01919193219191584 YFRFYRLIRLY 11 Unmodified _YFRFYRLIRLY_ 0 0 0 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 REV__nc|ENSG00000072756|Q96Q11-2|TRNT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.4537963867188 2 805.453728 1608.8929 NaN NaN NaN NaN NaN NaN NaN 85.688 1 85.688 85.188 86.188 0 0 0 0 0.9435 1 47480 47480 0 0 1 + 77443 17522 51780 52888 90127 90127 0.11281242364702848 YFRIDFDTL 9 Unmodified _YFRIDFDTL_ 0 0 0 REV__ENST00000562367.1_1_16:58208309-58230657:-|nuORF REV__ENST00000562367.1_1_16:58208309-58230657:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2994995117188 2 595.298039 1188.58152 0.63375 0.00037727 1.0479 0.00062382 1.6817 0.0010011 595.2989092534289 90.498 0.86684 84.323 83.793 84.659 -6.1757 143 50 4 0 0 0 0.39863 1 59959 59959 12.532 4.6214 1 99800000 + 77444 17481 51781 52889 90128 90128 -0.00522291730840152 YFRIRFYFRNW 11 Unmodified _YFRIRFYFRNW_ 0 0 0 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 ENSG00000105397|ENST00000525621|TYK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.624267578125 3 556.624643 1666.8521 0.32751 0.0001823 -1.5279 -0.00085048 -1.2004 -0.00066818 556.6239910175177 18.904 0.14878 18.91 18.82 18.969 0.0060463 16 7 3 0 0 0 0.74429 1 9590 9590 0.094841 0.094841 1 3935600 77445 2315 51782 52890 90129 90129 0.04534901045076367 YFRSLAHY 8 Unmodified _YFRSLAHY_ 0 0 0 ENSG00000158106|ENST00000289013|RHPN1;ENST00000522899.1_1_8:144461534-144462449:+|nuORF ENSG00000158106|ENST00000289013|RHPN1 ENSG00000158106|ENST00000289013|RHPN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1809387207031 3 352.846898 1055.51886 -0.5892 -0.0002079 0.97273 0.00034322 0.38353 0.00013533 352.8472570618493 18.727 0.36714 18.75 18.668 19.035 0.023106 105 40 3 0 0 0 0.80975 1 9380 9380 0.45834 0.057624 1 6611000 77446 6565 51783 52891 90130 90130 -0.006673930083934465 YFRSQKLWEF 10 Unmodified _YFRSQKLWEF_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.3572387695312 2 702.358962 1402.70337 -0.013586 -9.5422E-06 -0.031915 -2.2416E-05 -0.045501 -3.1958E-05 702.3592073585964 89.246 0.17545 89.246 89.186 89.362 0 10 7 2 0 0 0 0.71276 1 49405 49405 1.4819 0 1 576940 + 77447 19463 51784 52892 90131 90131 0.018127503515188437 YFRTLHLVN 9 Unmodified _YFRTLHLVN_ 0 0 0 ENST00000430355.5_1_3:185316292-185316773:+|nuORF ENST00000430355.5_1_3:185316292-185316773:+|nuORF ENST00000430355.5_1_3:185316292-185316773:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.2154846191406 3 388.217102 1161.62948 NaN NaN NaN NaN NaN NaN NaN 33.413 1 33.254 32.754 33.754 -0.15918 0 0 0 0.85798 1 17427 17427 0.23584 0 1 77448 13241 51785 52893 90132 90132 0.05512826979838792 YFRYFWLYRKK 11 Unmodified _YFRYFWLYRKK_ 0 0 0 REV__nc|ENSG00000139144|O75747-2|PIK3C2G REV__nc|ENSG00000139144|O75747-2|PIK3C2G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 835.4519653320312 2 835.453728 1668.8929 NaN NaN NaN NaN NaN NaN NaN 101.15 1 101.15 100.65 101.65 0 0 0 0 0.9435 1 55810 55810 0 0 1 + 77449 20387 51786 52894 90133 90133 0.08521242364668069 YFSALAIQLD 10 Unmodified _YFSALAIQLD_ 0 0 0 REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.869140625 3 380.869368 1139.58628 0.044991 1.7136E-05 0.98084 0.00037357 1.0258 0.00039071 380.86967310870295 34.726 0.22781 34.754 34.628 34.856 0.027401 24 10 3 0 0 0 0.48505 1 18311 18311 14.957 1.4385 1 5465200 + 77450 17813 51787 52895 90134 90134 0.022065924119033298 YFSALAIQLD 10 Unmodified _YFSALAIQLD_ 0 0 0 REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF REV__ENST00000478168.1_1_20:1444972-1447445:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 380.869368 1139.58628 0.044991 1.7136E-05 0.98084 0.00037357 1.0258 0.00039071 380.86967310870295 34.726 0.22781 34.754 34.628 34.856 0.027401 0.0532 -0.00051274 NaN 14.957 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5465200 + 77451 17813 51787 52895 0.022065924119033298 YFSDPFLKY 9 Unmodified _YFSDPFLKY_ 0 0 0 ENSG00000105854|ENST00000222572|PON2;nc|ENSG00000105854|Q15165-1|PON2;nc|ENSG00000105854|Q15165-3|PON2 ENSG00000105854|ENST00000222572|PON2 ENSG00000105854|ENST00000222572|PON2 MSMS AL20221201_MKP_PDAC_01 4 590.2887573242188 2 590.289682 1178.56481 NaN NaN NaN NaN NaN NaN NaN 56.917 1 50.94 50.44 51.44 -5.9769 0 0 0 0.46757 1 36361 36361 16.942 4.4107 1 77452 2371 51788 52896 90135 90135 -0.017327926168036356 YFSIYGLWF 9 Unmodified _YFSIYGLWF_ 0 0 0 ENST00000498648.5_1_2:202339356-202340375:+|nuORF ENST00000498648.5_1_2:202339356-202340375:+|nuORF ENST00000498648.5_1_2:202339356-202340375:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7794189453125 2 598.294768 1194.57498 NaN NaN NaN NaN NaN NaN NaN 91.344 1 90.85 90.35 91.35 -0.49457 0 0 0 0.84369 1 49930 49930 2.3027 0 1 77453 14428 51789 52897 90136 90136 -0.014521848915819646 YFSKEAAR 8 Unmodified _YFSKEAAR_ 0 0 0 nc|ENSG00000184792|Q969R2-2|OSBP2;ENSG00000184792|ENST00000332585|OSBP2;nc|ENSG00000184792|Q969R2-3|OSBP2;nc|ENSG00000184792|Q969R2-5|OSBP2;nc|ENSG00000184792|Q969R2-4|OSBP2;nc|ENSG00000184792|Q969R2-6|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 nc|ENSG00000184792|Q969R2-2|OSBP2 MSMS AL20221201_MKP_PDAC_01 4 485.7636413574219 2 486.250892 970.48723 NaN NaN NaN NaN NaN NaN NaN 51.965 1 46.23 45.73 46.73 -5.7345 0 0 0 0.69365 1 32759 32759 28.487 3.813 1 77454 9290 51790 52898 90137 90137 0.0008061423766321241 YFSKEASKLYF 11 Unmodified _YFSKEASKLYF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 461.5712890625 3 461.571211 1381.6918 0.46802 0.00021602 0.16708 7.7119E-05 0.6351 0.00029314 461.57128201009044 48.432 0.31535 48.388 48.239 48.555 -0.04369 46 15 4 0 0 0 0.15928 1 26096 26096 34.79 27.313 1 16121000 77455 16348 51791 52899 90138 90138 0.016225085375026538 YFSKEASKLYF 11 Unmodified _YFSKEASKLYF_ 0 0 0 nc|ENSG00000164951|Q9P0J1-2|PDP1;ENSG00000164951|ENST00000297598|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 nc|ENSG00000164951|Q9P0J1-2|PDP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 691.8546142578125 2 691.853178 1381.6918 0.46943 0.00032478 -0.29901 -0.00020687 0.17042 0.00011791 692.354441816203 48.394 0.21602 48.35 48.3 48.516 -0.04369 17 10 2 0 0 0 0.178 1 26157 26157 33.445 14.188 1 2751100 77456 16348 51791 52899 90139 90139 0.016225085375026538 YFSLNGVYLT 10 Unmodified _YFSLNGVYLT_ 0 0 0 REV__ENST00000463783.1_1_3:196666081-196669374:-|nuORF REV__ENST00000463783.1_1_3:196666081-196669374:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8018188476562 2 588.800414 1175.58628 0.49208 0.00028973 1.6415 0.00096654 2.1336 0.0012563 588.8017625519104 52.031 0.33541 51.973 51.875 52.21 -0.058918 28 15 3 0 0 0 0.35903 1 28223 28223 24.021 3.5669 1 3589500 + 77457 18918 51792 52900 90140 90140 0.005505924119006522 YFSPHLPPWWP 11 Unmodified _YFSPHLPPWWP_ 0 0 0 ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 713.8482055664062 2 713.850773 1425.68699 -0.14045 -0.00010026 -1.7538 -0.0012519 -1.8942 -0.0013522 713.8491570353651 39.002 0.25167 38.715 38.585 38.836 -0.28687 21 10 3 0 0 0 0.63851 1 20550 20550 9.3831 0 1 5697700 77458 13962 51793 52901 90141 90141 -0.008823308146020281 YFSPHLPPWWP 11 Unmodified _YFSPHLPPWWP_ 0 0 0 ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 713.8504028320312 2 713.850773 1425.68699 0.33257 0.0002374 -1.5414 -0.0011003 -1.2088 -0.0008629 713.8496291261612 43.948 0.23925 39.183 39.034 39.273 -4.7648 30 15 2 0 0 0 0.63851 1 26754 26754 9.3831 0.63772 1 9707700 77459 13962 51793 52901 90142 90142 -0.008823308146020281 YFSPHLPPWWP 11 Unmodified _YFSPHLPPWWP_ 0 0 0 ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF ENST00000475432.6_1_19:46800333-46815736:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 713.850773 1425.68699 0.28034 0.00020012 -2.4251 -0.0017312 -2.1448 -0.0015311 713.8491681695356 38.576 0.17985 38.588 38.498 38.678 0.011452 -0.063592 -0.00024218 NaN 9.3831 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 6238200 77460 13962 51793 52901 -0.008823308146020281 YFSQNNAMF 9 Unmodified _YFSQNNAMF_ 0 0 0 REV__ENSG00000278311|ENST00000613102|GGNBP2 REV__ENSG00000278311|ENST00000613102|GGNBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2413330078125 2 561.239667 1120.46478 0.80857 0.0004538 1.135 0.00063699 1.9435 0.0010908 561.2400884644105 82.353 0.24632 81.858 81.72 81.966 -0.4952 15 9 2 0 0 0 0.58466 1 45082 45082 2.3027 0 1 426580 + 77461 24670 51794 52902 90143 90143 -0.09063353222268233 YFSSGKYYW 9 Unmodified _YFSSGKYYW_ 0 0 0 ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 ENSG00000132274|ENST00000379965|TRIM22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.27294921875 2 600.771657 1199.52876 -0.078861 -4.7378E-05 -1.6922 -0.0010166 -1.7711 -0.001064 600.770502255201 54.325 0.25793 54.258 54.101 54.359 -0.066936 33 12 3 0 0 0 0.036857 1 29468 29468 51.63 36.381 1 10120000 77462 4383 51795 52903 90144 90144 -0.06302249793657211 YFSTISSSF 9 Unmodified _YFSTISSSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7427978515625 2 519.742565 1037.47058 0.53256 0.00027679 0.58055 0.00030174 1.1131 0.00057853 519.7428135685726 64.121 0.26733 63.636 63.511 63.779 -0.48512 28 12 3 0 0 0 0.28047 1 35016 35016 18.135 8.7875 1 1881600 77463 10689 51796 52904 90145 90145 -0.04665931438944426 YFSTISSSF 9 Unmodified _YFSTISSSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 519.742565 1037.47058 0.813 0.00042255 0.85008 0.00044182 1.6631 0.00086437 519.7433658909529 63.695 0.23452 63.685 63.59 63.825 -0.010532 0.024118 7.8537E-05 NaN 18.135 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1629200 77464 10689 51796 52904 -0.04665931438944426 YFTLYYAF 8 Unmodified _YFTLYYAF_ 0 0 0 ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 ENSG00000182938|ENST00000328801|OTOP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.2611083984375 2 544.260394 1086.50623 0.28834 0.00015693 0.046721 2.5429E-05 0.33506 0.00018236 544.2605008068368 83.303 0.4687 82.805 82.583 83.052 -0.49751 44 18 3 0 0 0 0.80624 1 45706 45706 2.8892 0.58649 1 1147400 77465 9102 51797 52905 90146 90146 -0.033558491913026955 YFTNELKQF 9 Unmodified _YFTNELKQF_ 0 0 0 ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF ENST00000466777.1_1_3:172236192-172241222:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2993774414062 2 595.298039 1188.58152 0.63375 0.00037727 1.0479 0.00062382 1.6817 0.0010011 595.2989092534289 90.498 0.86684 84.323 83.793 84.659 -6.1757 143 50 4 0 0 0 0.37804 1 59704 59704 13.508 1.8676 1 99800000 77466 13761 51798 52906 90147 90147 -0.005222917308628894 YFTSFAKC 8 Unmodified _YFTSFAKC_ 0 0 0 REV__nc|ENSG00000286135|A0A494C103|SPADH REV__nc|ENSG00000286135|A0A494C103|SPADH MULTI-MSMS AL20221201_MKP_PDAC_01 4 966.4365234375 1 966.438966 965.431689 0.52648 0.00050881 -2.4098 -0.0023289 -1.8833 -0.0018201 966.4369724977956 80.494 0.38049 74.318 74.135 74.516 -6.1757 40 20 3 0 0 0 0.55032 1 52754 52754 30.225 2.0516 1 21373000 + 77467 30020 51799 52907 90148 90148 -0.05240935274321146 YFTTQKTFKV 10 Unmodified _YFTTQKTFKV_ 0 0 0 CON__Q2TBQ1 CON__Q2TBQ1 CON__Q2TBQ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.8421020507812 2 631.842613 1261.67067 NaN NaN NaN NaN NaN NaN NaN 44.575 1 44.553 44.053 45.053 -0.022064 0 0 0 0.96981 1 23920 23920 3.9444 0.3479 1 + 77468 195 51800 52908 90149 90149 0.050305432286450014 YFTTVSESL 9 Unmodified _YFTTVSESL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2794799804688 2 523.755672 1045.49679 0.17478 9.1543E-05 -1.3716 -0.00071839 -1.1968 -0.00062684 523.7550114724121 58.669 0.24108 58.178 58.049 58.29 -0.49079 24 11 3 0 0 0 0.18118 1 31858 31858 18.135 2.3668 1 2265800 77469 3537 51801 52909 90150 90150 -0.024136622674632235 YFTTVSESL 9 Unmodified _YFTTVSESL_ 0 0 0 nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;KDM3B|p.S1203*|1|0.3|ENSG00000120733|chr5:138419124-138419125|AG/-|frameshift_variant nc|ENSG00000120733|Q7LBC6-2|KDM3B nc|ENSG00000120733|Q7LBC6-2|KDM3B MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 523.755672 1045.49679 0.61793 0.00032365 -1.8251 -0.00095588 -1.2071 -0.00063223 523.7553422578411 58.094 0.29377 58.094 57.968 58.262 0 -0.041899 -0.00029581 NaN 18.135 28 11 3 NaN NaN NaN NaN 0 NaN NaN 0 4308400 77470 3537 51801 52909 -0.024136622674632235 YFTYWLTFV 9 Unmodified _YFTYWLTFV_ 0 0 0 ENSG00000129667|ENST00000675367|RHBDF2;nc|ENSG00000129667|Q6PJF5|RHBDF2;ENST00000589582.5_1_17:74470614-74477615:-|nuORF;ENST00000590168.5_1_17:74469085-74473795:-|nuORF ENSG00000129667|ENST00000675367|RHBDF2 ENSG00000129667|ENST00000675367|RHBDF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.307861328125 2 620.307875 1238.6012 NaN NaN NaN NaN NaN NaN NaN 20.549 1 20.559 20.059 21.059 0.010553 0 0 0 0.8622 1 10483 10483 0 0 1 77471 4158 51802 52910 90151 90151 -0.008559157201261769 YFVDETETIYT 11 Unmodified _YFVDETETIYT_ 0 0 0 REV__ENSG00000070159|ENST00000374541|PTPN3 REV__ENSG00000070159|ENST00000374541|PTPN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.8131713867188 2 690.813916 1379.61328 0.016053 1.1089E-05 -1.1307 -0.0007811 -1.1146 -0.00077001 691.314786657725 58.529 0.26318 58.529 58.414 58.677 0 22 10 3 0 0 0 0.6889 1 32623 32623 5.2969 0 1 1187500 + 77472 17464 51803 52911 90152 90152 -0.061343885582118673 YFVGKEHANYF 11 Unmodified _YFVGKEHANYF_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 458.8882751464844 3 458.887422 1373.64044 0.64842 0.00029755 -0.11471 -5.264E-05 0.53371 0.00024491 458.88744109303553 40.613 0.22544 40.618 40.47 40.695 0.0050545 22 10 3 0 0 0 0.58245 1 21658 21658 12.228 6.3594 1 4645300 77473 2360 51804 52912 90153 90153 -0.03143815436533259 YFVLSPGPE 9 Unmodified _YFVLSPGPE_ 0 0 0 ENST00000478277.5_1_1:161088025-161088985:+|nuORF;ENST00000496768.5_1_1:161087910-161088985:+|nuORF;ENST00000368009.6_1_1:161087910-161088985:+|nuORF ENST00000478277.5_1_1:161088025-161088985:+|nuORF ENST00000478277.5_1_1:161088025-161088985:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.75439453125 2 504.755475 1007.4964 0.47548 0.00024 -0.72938 -0.00036816 -0.25391 -0.00012816 504.75497146399306 77.39 0.22554 77.39 77.265 77.491 0 21 16 2 0 0 0 0.30562 1 43015 43015 16.942 4.4107 1 2255900 77474 12253 51805 52913 90154 90154 -0.007050371966556668 YFVLSPGPE 9 Unmodified _YFVLSPGPE_ 0 0 0 ENST00000478277.5_1_1:161088025-161088985:+|nuORF;ENST00000496768.5_1_1:161087910-161088985:+|nuORF;ENST00000368009.6_1_1:161087910-161088985:+|nuORF ENST00000478277.5_1_1:161088025-161088985:+|nuORF ENST00000478277.5_1_1:161088025-161088985:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.7548828125 2 504.755475 1007.4964 -1.3175 -0.00066504 1.1162 0.00056339 -0.20138 -0.00010165 504.75598577808967 77.874 0.28915 77.392 77.215 77.505 -0.4826 28 23 2 0 0 0 0.30562 1 42637 42637 16.942 3.4344 1 2939800 77475 12253 51805 52913 90155 90155 -0.007050371966556668 YFVQQEQF 8 Unmodified _YFVQQEQF_ 0 0 0 REV__ENSG00000145936|ENST00000274629|KCNMB1 REV__ENSG00000145936|ENST00000274629|KCNMB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7550048828125 2 544.756007 1087.49746 0.16572 9.0276E-05 -0.46156 -0.00025144 -0.29584 -0.00016116 544.7557528117406 37.479 0.23589 37.479 37.35 37.586 0 31 12 3 0 0 0 0.80447 1 19921 19921 3.9444 0.3479 1 14508000 + 77476 20801 51806 52914 90156 90156 -0.042788228277458984 YFVTSYYTC 9 Unmodified _YFVTSYYTC_ 0 0 0 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 ENSG00000132879|ENST00000251547|FBXO44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.8313293457031 3 382.831926 1145.47395 -0.76728 -0.00029374 -1.3123 -0.00050238 -2.0796 -0.00079612 382.8311604323796 55.595 0.24133 55.595 55.389 55.631 0 15 10 2 0 0 0 0.55144 1 30909 30909 2.4985 0 1 2044200 77477 4460 51807 52915 90157 90157 -0.09297004656605168 YFWGNYFL 8 Unmodified _YFWGNYFL_ 0 0 0 ENST00000415912.6_1_1:21545990-21546407:-|nuORF ENST00000415912.6_1_1:21545990-21546407:-|nuORF ENST00000415912.6_1_1:21545990-21546407:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.258544921875 2 555.258185 1108.50182 0.62985 0.00034973 -1.7678 -0.00098161 -1.138 -0.00063188 555.2573223846197 92.482 0.22221 92.001 91.903 92.126 -0.48092 14 10 2 0 0 0 0.80624 1 50554 50554 2.8892 0 1 439610 77478 13031 51808 52916 90158 90158 -0.04809313614214261 YFWNIRAYRFF 11 Unmodified _YFWNIRAYRFF_ 0 0 0 ENST00000471538.1_1_1:16200000-16200039:+|nuORF ENST00000471538.1_1_1:16200000-16200039:+|nuORF ENST00000471538.1_1_1:16200000-16200039:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.75537109375 3 528.269978 1581.7881 -0.19985 -0.00010557 3.3144 0.0017509 3.1145 0.0016453 528.2735269600809 33.227 0.2183 33.227 33.109 33.327 0 22 10 3 0 0 0 0.30599 1 17402 17402 0.50596 0 1 4147100 77479 13876 51809 52917 90159 90159 0.02048120888093763 YFWPRTVPM 9 Unmodified _YFWPRTVPM_ 0 0 0 ENST00000471702.2_2_3:132339980-132400782:-|nuORF;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;nc|ENSG00000240303|Q709F0-3|ACAD11 ENST00000471702.2_2_3:132339980-132400782:-|nuORF ENST00000471702.2_2_3:132339980-132400782:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1197.300170898438 1 1196.59211 1195.58484 2.2767 0.0027242 -1.4922 -0.0017855 0.78449 0.00093871 1197.5916958905248 93.871 0.21835 93.894 93.794 94.012 0.022987 13 8 3 0 0 0 0.58145 1 52222 52222 4.3292 2.0465 1 2015100 77480 10671 51810 52918 90160 90160 -0.005133201578701119 YFYHGVHKI 9 Unmodified _YFYHGVHKI_ 0 0 0 nc|ENSG00000136492|Q9BX63-2|BRIP1;ENSG00000136492|ENST00000259008|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 nc|ENSG00000136492|Q9BX63-2|BRIP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 388.1973571777344 3 388.538064 1162.59236 1.1086 0.00043071 -1.2305 -0.0004781 -0.12197 -4.7389E-05 388.53781764297094 28.663 0.27002 25.515 25.303 25.573 -3.1482 22 13 2 0 0 0 0.16524 1 15989 15989 20.415 6.0092 1 5698700 77481 4826 51811 52919 90161 90161 0.017571554340747753 YFYIKYYRIRY 11 Unmodified _YFYIKYYRIRY_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MSMS AL20221201_MKP_PDAC_01 4 824.4343872070312 2 824.437744 1646.86093 NaN NaN NaN NaN NaN NaN NaN 65.728 1 59.553 59.053 60.053 -6.1757 0 0 0 0.94301 1 42688 42688 0.35063 0 1 + 77482 23366 51812 52920 90162 90162 0.06337829890890134 YFYKGIMTL 9 Unmodified _YFYKGIMTL_ 0 0 0 REV__nc|ENSG00000155380|P53985-2|SLC16A1 REV__nc|ENSG00000155380|P53985-2|SLC16A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 568.8403930664062 2 568.296453 1134.57835 1.485 0.00084393 0.80254 0.00045608 2.2876 0.0013 568.296829417633 79.63 0.73608 73.454 73.04 73.777 -6.1757 69 43 2 0 0 0 0.19613 1 52299 52299 12.532 3.1841 1 14761000 + 77483 21269 51813 52921 90163 90163 0.016447418908001055 YFYMVMEY 8 Unmodified _YFYMVMEY_ 0 0 0 ROCK1|p.L149F|1|0.1|ENSG00000067900|chr18:21045437-21045437|G/A|missense_variant ROCK1|p.L149F|1|0.1|ENSG00000067900|chr18:21045437-21045437|G/A|missense_variant ROCK1|p.L149F|1|0.1|ENSG00000067900|chr18:21045437-21045437|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2381591796875 2 573.237747 1144.46094 -0.20397 -0.00011692 1.0277 0.0005891 0.82369 0.00047217 573.2381718424379 41.344 0.20079 41.344 41.241 41.441 0 15 9 2 0 0 0 0.72953 1 22302 22302 14.582 8.3759 1 2091000 77484 30151 51814 52922 90164 90164 -0.1055115904032391 YFYQEEFY 8 Unmodified _YFYQEEFY_ 0 0 0 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 ENSG00000155561|ENST00000285968|NUP205 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8345031738281 3 396.834324 1187.48114 0.10771 4.2744E-05 0.59729 0.00023703 0.70501 0.00027977 396.8344947924761 50.485 0.27449 50.485 50.389 50.664 0 19 12 2 0 0 0 0.80799 1 27855 27855 1.8442 0 1 1306300 77485 6396 51815 52923 90165 90165 -0.10509948784533663 YFYQWEEILKR 11 Unmodified _YFYQWEEILKR_ 0 0 0 REV__ENSG00000123066|ENST00000281928|MED13L REV__ENSG00000123066|ENST00000281928|MED13L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 787.9066772460938 2 787.903734 1573.79291 NaN NaN NaN NaN NaN NaN NaN 102.65 1 102.6 102.1 103.1 -0.047928 0 0 0 0.9434 1 57013 57013 0.26902 0.26902 1 + 77486 19367 51816 52924 90166 90166 0.028969602402185046 YFYRRGRWL 9 Unmodified _YFYRRGRWL_ 0 0 0 REV__ENST00000294740.3_1_1:200379109-200379139:-|nuORF REV__ENST00000294740.3_1_1:200379109-200379139:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 658.8546142578125 2 658.854181 1315.69381 0.3597 0.00023699 0.28684 0.00018898 0.64653 0.00042597 658.854100611289 102.82 0.083633 102.72 102.66 102.75 -0.10458 5 3 2 0 0 0 0.62242 1 56104 56104 0 0 1 1360800 + 77487 25256 51817 52925 90167 90167 0.048590268566613304 YFYVFPIWFF 10 Unmodified _YFYVFPIWFF_ 0 0 0 REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1 REV__nc|ENSG00000168216|Q9NUN5-2|LMBRD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 714.85498046875 2 714.854993 1427.69543 NaN NaN NaN NaN NaN NaN NaN 16.933 1 16.938 16.438 17.438 0.0050564 0 0 0 1.0061 1 8515 8515 0 0 1 + 77488 22296 51818 52926 90168 90168 -0.0013077689798137726 YFYVTTIL 8 Unmodified _YFYVTTIL_ 0 0 0 REV__ENSG00000105613|ENST00000251472|MAST1 REV__ENSG00000105613|ENST00000251472|MAST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2760925292969 2 510.276044 1018.53753 NaN NaN NaN NaN NaN NaN NaN 63.691 1 63.691 63.191 64.191 0 0 0 0 0.97444 1 35525 35525 2.8892 0 1 + 77489 18439 51819 52927 90169 90169 0.029007238428107485 YGAEDMSRM 9 Unmodified _YGAEDMSRM_ 0 0 0 REV__ENSG00000163395|ENST00000335211|IGFN1 REV__ENSG00000163395|ENST00000335211|IGFN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.2158813476562 2 530.215334 1058.41612 -0.16745 -8.8786E-05 0.84992 0.00045064 0.68247 0.00036185 530.2159325143161 25.62 0.23535 22.737 22.586 22.822 -2.8831 18 12 2 0 0 0 0.36964 1 14004 14004 13.906 0.29118 1 3679600 + 77490 21759 51820 52928 90170 90170 -0.1107558985365813 YGAICGFG 8 Unmodified _YGAICGFG_ 0 0 0 ENSG00000102471|ENST00000218652|NDFIP2 ENSG00000102471|ENST00000218652|NDFIP2 ENSG00000102471|ENST00000218652|NDFIP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.1758728027344 2 394.175807 786.337061 NaN NaN NaN NaN NaN NaN NaN 31.86 1 31.89 31.39 32.39 0.030106 0 0 0 0.9706 1 16711 16711 6.3541 3.4649 1 77491 2047 51821 52929 90171 90171 -0.06465449025631642 YGALKWSK 8 Unmodified _YGALKWSK_ 0 0 0 REV__ENST00000462685.1_1_2:74159806-74173970:+|nuORF REV__ENST00000462685.1_1_2:74159806-74173970:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.7655334472656 2 476.766178 951.517802 NaN NaN NaN NaN NaN NaN NaN 76.941 1 70.766 70.266 71.266 -6.1757 0 0 0 0.9192 1 50320 50320 16.942 0 1 + 77492 27340 51822 52930 90172 90172 0.040103926226947806 YGANLFHQY 9 Unmodified _YGANLFHQY_ 0 0 0 ENST00000486462.1_1_22:17618913-17622310:-|nuORF;ENST00000477157.5_1_22:17618913-17622310:-|nuORF;nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5 ENST00000486462.1_1_22:17618913-17622310:-|nuORF ENST00000486462.1_1_22:17618913-17622310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 556.7598266601562 2 556.761623 1111.50869 0.12161 6.7706E-05 -3.3109 -0.0018434 -3.1893 -0.0017757 556.7600443210848 30.67 0.13388 30.7 30.649 30.783 0.030106 10 5 2 0 0 0 0.49272 1 16054 16054 7.9102 0.62092 1 801560 77493 1013 51823 52931 90173 90173 -0.0426000073364321 YGARLNKWVL 10 Unmodified _YGARLNKWVL_ 0 0 0 ENST00000450775.2_1_16:725790-727700:+|nuORF;ENSG00000103269|ENST00000352681|RHBDL1;nc|ENSG00000103269|O75783|RHBDL1 ENST00000450775.2_1_16:725790-727700:+|nuORF ENST00000450775.2_1_16:725790-727700:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.236328125 3 407.236385 1218.68733 0.77233 0.00031452 -0.0036319 -1.479E-06 0.7687 0.00031304 407.2363510632138 63.957 0.33382 63.946 63.783 64.117 -0.010532 51 16 4 0 0 0 0.67413 1 35071 35071 5.7834 0.38072 1 37616000 77494 2123 51824 52932 90174 90174 0.08673088905266013 YGCCSKRPN 9 Unmodified _YGCCSKRPN_ 0 0 0 nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4 nc|ENSG00000108389|Q9NYA4|MTMR4 nc|ENSG00000108389|Q9NYA4|MTMR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.225341796875 2 514.226036 1026.43752 NaN NaN NaN NaN NaN NaN NaN 89.577 1 89.577 89.077 90.077 0 0 0 0 0.84892 1 49563 49563 1.6526 0.85899 1 77495 2564 51825 52933 90175 90175 -0.07464160034305678 YGCKALSSDLH 11 Unmodified _YGCKALSSDLH_ 0 0 0 REV__ENSG00000175262|ENST00000377004|C1orf127 REV__ENSG00000175262|ENST00000377004|C1orf127 MSMS AL20221201_MKP_PDAC_01 4 398.8738708496094 3 398.525496 1192.55466 NaN NaN NaN NaN NaN NaN NaN 28.999 1 25.697 25.197 26.197 -3.3016 0 0 0 0.63856 1 16226 16226 11.631 3.1871 1 + 77496 22856 51826 52934 90176 90176 -0.033917236136858264 YGCRFHSDN 9 Unmodified _YGCRFHSDN_ 0 0 0 nc|ENSG00000165810|Q6UXG8-2|BTNL9;nc|ENSG00000165810|Q6UXG8-3|BTNL9;ENSG00000165810|ENST00000327705|BTNL9 nc|ENSG00000165810|Q6UXG8-2|BTNL9 nc|ENSG00000165810|Q6UXG8-2|BTNL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.8196105957031 3 366.818902 1097.43488 0.68881 0.00025267 0.6067 0.00022255 1.2955 0.00047522 366.8191273833589 42.879 0.1898 42.879 42.776 42.966 0 15 9 2 0 0 0 0.58466 1 23268 23268 1.1933 0 1 4058200 77497 7393 51827 52935 90177 90177 -0.10994292167583808 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.1408081054688 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 15.316 1 15.316 14.816 15.816 0 0 0 0 0.97444 1 7368 7368 0 0 1 + 77498 23464 51828 52936 90178 90178 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.1402587890625 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 15.595 1 15.595 15.095 16.095 0 0 0 0 0.97444 1 7525 7525 0 0 1 + 77499 23464 51828 52936 90179 90179 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.1410522460938 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 25.15 1 25.15 24.65 25.65 0 0 0 0 0.97444 1 12883 12883 0 0 1 + 77500 23464 51828 52936 90180 90180 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.1397399902344 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 17.632 1 17.645 17.145 18.145 0.013865 0 0 0 0.97444 1 8782 8782 0 0 1 + 77501 23464 51828 52936 90181 90181 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.1404724121094 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 20.862 1 20.89 20.39 21.39 0.028357 0 0 0 0.97444 1 10570 10570 0 0 1 + 77502 23464 51828 52936 90182 90182 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1414794921875 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 1.1915 1 1.1708 0.67084 1.6708 -0.020623 0 0 0 0.97444 1 615 615 0 0 1 + 77503 23464 51828 52936 90183 90183 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1408081054688 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 4.0895 1 4.0832 3.5832 4.5832 -0.0062971 0 0 0 0.97444 1 2073 2073 0 0 1 + 77504 23464 51828 52936 90184 90184 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1415405273438 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 4.6052 1 4.5989 4.0989 5.0989 -0.0062971 0 0 0 0.97444 1 2327 2327 0 0 1 + 77505 23464 51828 52936 90185 90185 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1410827636719 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 6.5638 1 6.5727 6.0727 7.0727 0.0089307 0 0 0 0.97444 1 3288 3288 0 0 1 + 77506 23464 51828 52936 90186 90186 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1408081054688 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 7.939 1 7.9543 7.4543 8.4543 0.015238 0 0 0 0.97444 1 3957 3957 0 0 1 + 77507 23464 51828 52936 90187 90187 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1408081054688 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 9.1317 1 9.1493 8.6493 9.6493 0.017581 0 0 0 0.97444 1 4535 4535 0 0 1 + 77508 23464 51828 52936 90188 90188 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.140625 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 9.809 1 9.8265 9.3265 10.327 0.017581 0 0 0 0.97444 1 4859 4859 0 0 1 + 77509 23464 51828 52936 90189 90189 -0.17957700951228617 YGDDEDGD 8 Unmodified _YGDDEDGD_ 0 0 0 REV__nc|ENSG00000185024|Q92994-9|BRF1 REV__nc|ENSG00000185024|Q92994-9|BRF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.1408386230469 2 443.140869 884.267186 NaN NaN NaN NaN NaN NaN NaN 11.016 1 11.031 10.531 11.531 0.015327 0 0 0 0.97444 1 5440 5440 0 0 1 + 77510 23464 51828 52936 90190 90190 -0.17957700951228617 YGDHTMQHAEE 11 Unmodified _YGDHTMQHAEE_ 0 0 0 REV__ENSG00000134452|ENST00000362091|FBH1 REV__ENSG00000134452|ENST00000362091|FBH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8428955078125 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 8.2433 1 8.2433 7.7433 8.7433 0 0 0 0 0.9435 1 3936 3936 0 0 1 + 77511 19985 51829 52937 90191 90191 -0.1364299386671064 YGDILHVI 8 Unmodified _YGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000150672|Q15700-5|DLG2;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2569580078125 2 465.258185 928.501818 NaN NaN NaN NaN NaN NaN NaN 71.928 1 71.928 71.428 72.428 0 0 0 0 0.47265 1 40057 40057 42.968 22.097 1 77512 1346;6067;16268 51830 52938 90192 90192 0.034706863857991266 YGDILHVI 8 Unmodified _YGDILHVI_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000150672|Q15700-5|DLG2;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2588195800781 2 465.258185 928.501818 0.49552 0.00023055 -0.85549 -0.00039802 -0.35996 -0.00016748 465.2576366044686 72.3 0.24998 71.824 71.709 71.959 -0.47609 19 11 2 0 0 0 0.35156 1 39578 39578 49.669 30.23 1 1063500 77513 1346;6067;16268 51830 52938 90193 90193 0.034706863857991266 YGDLVYLDFRN 11 Unmodified _YGDLVYLDFRN_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 687.83837890625 2 687.838059 1373.66157 0.16595 0.00011415 -0.045323 -3.1175E-05 0.12063 8.2972E-05 687.8378628544971 55.019 0.24171 54.541 54.409 54.65 -0.47798 29 11 3 0 0 0 0.65846 1 29824 29824 8.1555 1.0538 1 3932600 77514 6866 51831 52939 90194 90194 -0.010318501276969982 YGDLVYLDFRN 11 Unmodified _YGDLVYLDFRN_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 687.838059 1373.66157 0.16595 0.00011415 -0.045323 -3.1175E-05 0.12063 8.2972E-05 687.8378628544971 55.019 0.24171 54.541 54.409 54.65 -0.47798 -0.046434 -1.526E-05 NaN 8.1555 29 11 3 NaN NaN NaN NaN 0 NaN NaN 0 3932600 77515 6866 51831 52939 -0.010318501276969982 YGDLVYLDFRN 11 Unmodified _YGDLVYLDFRN_ 0 0 0 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 ENSG00000162494|ENST00000376085|LRRC38 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 687.838059 1373.66157 0.43539 0.00029948 -0.025409 -1.7477E-05 0.40998 0.000282 687.838072008231 54.701 0.12231 54.634 54.56 54.683 -0.066936 0.046434 1.2135E-05 NaN 8.1555 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1468500 77516 6866 51831 52939 -0.010318501276969982 YGDVEIDRNKH 11 Unmodified _YGDVEIDRNKH_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.2218017578125 3 449.221352 1344.64223 -0.63248 -0.00028412 1.4077 0.00063235 0.77518 0.00034823 449.22195670379926 17.537 0.076099 17.551 17.511 17.587 0.013866 35 15 3 0 0 0 0.7326 1 8719 8719 0.40827 0.078994 1 1296600 77517 2218 51832 52940 90195 90195 -0.016308064185977855 YGDVEIDRNKH 11 Unmodified _YGDVEIDRNKH_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 449.221352 1344.64223 0.46482 0.00020881 0.84013 0.0003774 1.3049 0.00058621 449.2217504443583 17.496 0.088585 17.501 17.447 17.535 0.0050564 -0.025391 -0.00066623 NaN 0.40827 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 774190 77518 2218 51832 52940 -0.016308064185977855 YGEAQAVLF 9 Unmodified _YGEAQAVLF_ 0 0 0 nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4 nc|ENSG00000196371|P22083-2|FUT4 nc|ENSG00000196371|P22083-2|FUT4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.7861022949219 2 499.2531 996.491647 0.53281 0.00026601 -1.7496 -0.0008735 -1.2168 -0.00060749 499.2518091068865 81.944 0.24002 81.448 81.342 81.582 -0.4952 12 8 2 0 0 0 0.203 1 44923 44923 9.3474 5.0182 1 227980 77519 9806 51833 52941 90196 90196 -0.006739213394325816 YGEIFEKF 8 Unmodified _YGEIFEKF_ 0 0 0 nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 nc|ENSG00000151366|O95298-2|NDUFC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7555541992188 2 516.755475 1031.4964 NaN NaN NaN NaN NaN NaN NaN 63.872 1 63.386 62.886 63.886 -0.48512 0 0 0 0.27899 1 34840 34840 65.235 29.191 1 77520 6109 51834 52942 90197 90197 -0.018090371966763996 YGEKGEMEK 9 Unmodified _YGEKGEMEK_ 0 0 0 ENST00000263056.5_1_10:30722942-30726138:+|nuORF ENST00000263056.5_1_10:30722942-30726138:+|nuORF ENST00000263056.5_1_10:30722942-30726138:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7423706054688 2 535.744782 1069.47501 0.30695 0.00016445 -2.8336 -0.0015181 -2.5266 -0.0013536 535.7431428459006 53.195 0.32998 52.744 52.613 52.943 -0.45173 30 16 2 0 0 0 0.028475 1 28775 28775 56.177 3.9087 1 4649100 77521 11279 51835 52943 90198 90198 -0.05694790287680007 YGEKGEMEK 9 Unmodified _YGEKGEMEK_ 0 0 0 ENST00000263056.5_1_10:30722942-30726138:+|nuORF ENST00000263056.5_1_10:30722942-30726138:+|nuORF ENST00000263056.5_1_10:30722942-30726138:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.744782 1069.47501 0.24952 0.00013368 -2.8725 -0.0015389 -2.623 -0.0014052 535.7430164711451 52.551 0.32682 52.551 52.423 52.75 0 -0.096137 -1.5676E-05 NaN 56.177 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 4052200 77522 11279 51835 52943 -0.05694790287680007 YGFEMEDQIWR 11 Unmodified _YGFEMEDQIWR_ 0 0 0 REV__ENSG00000142623|ENST00000375471|PADI1 REV__ENSG00000142623|ENST00000375471|PADI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 737.82763671875 2 737.327002 1472.63945 -0.026212 -1.9327E-05 1.123 0.00082802 1.0968 0.00080869 737.3280383094536 64.078 0.2611 64.078 63.93 64.191 0 21 10 3 0 0 0 0.7326 1 35721 35721 1.1933 0 1 798270 + 77523 20583 51836 52944 90199 90199 -0.07796397867764426 YGFFFFFFF 9 Unmodified _YGFFFFFFF_ 0 0 0 REV__ENST00000379731.4_1_9:33111209-33111335:-|nuORF REV__ENST00000379731.4_1_9:33111209-33111335:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5320129394531 3 423.532028 1267.57425 NaN NaN NaN NaN NaN NaN NaN 19.524 1 19.552 19.052 20.052 0.028357 0 0 0 0.8622 1 9849 9849 0 0 1 + 77524 24895 51837 52945 90200 90200 -0.048829795406390986 YGFLECFGDNC 11 Unmodified _YGFLECFGDNC_ 0 0 0 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 REV__nc|ENSG00000173826|Q9H252-2|KCNH6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1267.266479492188 1 1267.47582 1266.46855 0.19299 0.00024461 0.071441 9.0549E-05 0.26443 0.00033516 1268.4769094189571 55.653 0.16859 55.175 55.069 55.238 -0.47798 9 7 2 0 0 0 0.30605 1 30139 30139 0 0 1 1129900 + 77525 22753 51838 52946 90201 90201 -0.15403051510679688 YGFQEKEAF 9 Unmodified _YGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7615966796875 2 559.761289 1117.50803 0.3671 0.00020549 0.50736 0.000284 0.87446 0.00048949 559.7615267852674 43.311 0.36478 43.311 43.121 43.486 0 66 17 5 0 0 0 0.0093064 2 23565 23458;23565 83.429 39.57 1 104580000 77526 6999 51839 52947 90202;90203 90203 -0.04602840173333789 YGFQEKEAF 9 Unmodified _YGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7619018554688 2 559.761289 1117.50803 NaN NaN NaN NaN NaN NaN NaN 43.587 1 43.277 42.777 43.777 -0.31039 0 0 0 0.054801 1 23196 23196 55.503 19.376 1 77527 6999 51839 52947 90204 90204 -0.04602840173333789 YGFQEKEAF 9 Unmodified _YGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.7614135742188 2 559.761289 1117.50803 0.88777 0.00049694 0.0094972 5.3162E-06 0.89727 0.00050226 559.7611026740576 48.884 0.40719 43.488 43.24 43.648 -5.3961 67 24 4 0 0 0 0.0081887 2 30369 30369;30495 93.166 51.326 1 172160000 77528 6999 51839 52947 90205;90206 90205 -0.04602840173333789 YGFQEKEAF 9 Unmodified _YGFQEKEAF_ 0 0 0 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 ENSG00000163481|ENST00000295704|RNF25 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.761289 1117.50803 0.34443 0.0001928 -1.0676 -0.00059759 -0.72314 -0.00040479 559.7607622786556 43.554 0.10784 43.243 43.144 43.252 -0.31039 -0.10408 -0.0015019 NaN 93.166 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 4948200 77529 6999 51839 52947 -0.04602840173333789 YGFQLAGTLLI 11 Unmodified _YGFQLAGTLLI_ 0 0 0 REV__ENSG00000129562|ENST00000250498|DAD1 REV__ENSG00000129562|ENST00000250498|DAD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.841064453125 2 598.339707 1194.66486 0.5046 0.00030192 -0.06003 -3.5918E-05 0.44457 0.000266 598.3399426697669 89.186 0.18549 88.682 88.589 88.774 -0.50423 10 7 2 0 0 0 0.66428 1 48795 48795 7.609 0 1 245430 + 77530 19673 51840 52948 90207 90207 0.07531444717005797 YGFQLAGTLLI 11 Unmodified _YGFQLAGTLLI_ 0 0 0 REV__ENSG00000129562|ENST00000250498|DAD1 REV__ENSG00000129562|ENST00000250498|DAD1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 598.339707 1194.66486 0.5046 0.00030192 -0.06003 -3.5918E-05 0.44457 0.000266 598.3399426697669 89.186 0.18549 88.682 88.589 88.774 -0.50423 0 0 NaN 7.609 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 245430 + 77531 19673 51840 52948 0.07531444717005797 YGGAGGRGIRI 11 Unmodified _YGGAGGRGIRI_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 538.7664184570312 2 538.801614 1075.58868 NaN NaN NaN NaN NaN NaN NaN 32.318 1 32.347 31.847 32.847 0.029743 0 0 0 0.76159 1 16965 16965 13.906 3.8321 1 + 77532 176 51841 52949 90208 90208 0.05390485660223021 YGGGGQYF 8 Unmodified _YGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.3564453125 1 848.357345 847.350068 0.27967 0.00023726 -0.16524 -0.00014018 0.11443 9.7078E-05 848.3574327762936 42.366 0.22696 42.366 42.218 42.445 0 17 10 2 0 0 0 0.55063 2 22886 22886;22973 30.198 7.0499 1 1472400 77533 74 51842 52950 90209;90210 90209 -0.07971294641913573 YGGGGQYF 8 Unmodified _YGGGGQYF_ 0 0 0 ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|179|406.46|0.0|25.28|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENST00000429216.1_1_2:201928351-201928714:+|nuORF;ENST00000452680.3_1_1:116399593-116399968:-|nuORF;ENST00000424115.1_1_3:39377022-39377364:+|nuORF;ENST00000432375.1_1_6:32293532-32293889:+|nuORF ENSG00000135486|ENST00000340913|HNRNPA1 ENSG00000135486|ENST00000340913|HNRNPA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 848.3587036132812 1 848.357345 847.350068 0.7162 0.00060759 0.12641 0.00010724 0.84261 0.00071484 848.3577245636185 48.708 0.3403 43.311 43.101 43.441 -5.3961 30 19 2 0 0 0 0.29369 2 30271 30271;30400 56.048 29.707 1 22366000 77534 74 51842 52950 90211;90212 90211 -0.07971294641913573 YGGIPAFIH 9 Unmodified _YGGIPAFIH_ 0 0 0 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 ENSG00000113845|ENST00000494664|TIMMDC1 MSMS AL20221201_MKP_PDAC_01 4 487.75927734375 2 487.758352 973.502152 NaN NaN NaN NaN NaN NaN NaN 15.413 1 12.886 12.386 13.386 -2.5273 0 0 0 0.70111 1 7905 7905 9.3474 1.4373 1 77535 3007 51843 52951 90213 90213 0.01434106105648425 YGGLAFVELMI 11 Unmodified _YGGLAFVELMI_ 0 0 0 ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A ENST00000510445.1_1_5:93120070-93217196:-|nuORF ENST00000510445.1_1_5:93120070-93217196:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.8209838867188 2 606.820292 1211.62603 2.5478 0.0015461 -0.43044 -0.0002612 2.1174 0.0012849 606.8199832853732 99.956 0.27446 99.92 99.799 100.07 -0.036301 19 9 4 0 0 0 0.54936 1 55513 55513 13.906 0.39817 1 19858000 77536 2965 51844 52952 90214 90214 0.028683960909575035 YGGLAFVELMI 11 Unmodified _YGGLAFVELMI_ 0 0 0 ENST00000510445.1_1_5:93120070-93217196:-|nuORF;nc|ENSG00000113391|Q8WUF8-4|ARB2A;nc|ENSG00000113391|Q8WUF8-3|ARB2A;ENSG00000113391|ENST00000395965|FAM172A ENST00000510445.1_1_5:93120070-93217196:-|nuORF ENST00000510445.1_1_5:93120070-93217196:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 606.820292 1211.62603 0.32275 0.00019585 -2.0426 -0.0012395 -1.7199 -0.0010437 607.3209681376557 100.02 0.14465 99.86 99.757 99.901 -0.1575 -0.030015 -0.0018308 NaN 13.906 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 491330 77537 2965 51844 52952 0.028683960909575035 YGGLYLEENLD 11 Unmodified _YGGLYLEENLD_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.2998046875 2 643.300975 1284.5874 -0.20624 -0.00013267 -1.8841 -0.001212 -2.0903 -0.0013447 643.299444997623 32.062 0.22427 31.932 31.818 32.042 -0.12915 12 8 2 0 0 0 0.67371 1 16688 16688 6.7232 0.93973 1 1664100 + 77538 20594 51845 52953 90215 90215 -0.04351238009849112 YGHLDVVEY 9 Unmodified _YGHLDVVEY_ 0 0 0 ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A ENSG00000141965|ENST00000269856|FEM1A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7907104492188 2 547.761289 1093.50803 0.92066 0.0005043 2.5678 0.0014066 3.4885 0.0019109 547.7624478557515 46.324 0.34744 46.324 46.088 46.436 0 34 16 3 0 0 0 0.1474 1 25292 25292 28.487 13.238 1 7779500 77539 5383 51846 52954 90216 90216 -0.034988401733244245 YGHSRINY 8 Unmodified _YGHSRINY_ 0 0 0 REV__ENSG00000168143|ENST00000306858|FAM83B REV__ENSG00000168143|ENST00000306858|FAM83B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.2449951171875 2 505.246141 1008.47773 NaN NaN NaN NaN NaN NaN NaN 56.921 1 56.921 56.421 57.421 0 0 0 0 0.95201 1 31670 31670 10.183 2.8942 1 + 77540 22294 51847 52955 90217 90217 -0.026171540478571842 YGHWGRQWG 9 Unmodified _YGHWGRQWG_ 0 0 0 REV__ENSG00000164303|ENST00000296741|ENPP6 REV__ENSG00000164303|ENST00000296741|ENPP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.8459167480469 3 382.84578 1145.51551 NaN NaN NaN NaN NaN NaN NaN 11.849 1 11.861 11.361 12.361 0.012355 0 0 0 0.8622 1 5849 5849 0 0 1 + 77541 21901 51848 52956 90218 90218 -0.05142643062390562 YGIRLEHF 8 Unmodified _YGIRLEHF_ 0 0 0 ENSG00000143228|ENST00000271452|NUF2;ENST00000487578.2_1_1:163295841-163298095:+|nuORF;ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENSG00000143228|ENST00000271452|NUF2;ENST00000490881.5_1_1:163291794-163297702:+|nuORF ENSG00000143228|ENST00000271452|NUF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.7743530273438 2 517.774534 1033.53451 NaN NaN NaN NaN NaN NaN NaN 51.416 1 51.362 50.862 51.862 -0.053871 0 0 0 0.068755 1 27830 27830 99.799 65.697 1 77542 5481;14270 51849 52957 90219 90219 0.01908893508652909 YGKCGHENLQL 11 Unmodified _YGKCGHENLQL_ 0 0 0 ENSG00000173041|ENST00000309683|ZNF680;ENSG00000223614|ENST00000429565|ZNF735 ENSG00000173041|ENST00000309683|ZNF680;ENSG00000223614|ENST00000429565|ZNF735 ENSG00000173041|ENST00000309683|ZNF680 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.2053833007812 3 421.204645 1260.59211 0.044499 1.8743E-05 1.5077 0.00063505 1.5522 0.0006538 421.2053570116042 18.595 0.11961 18.601 18.563 18.683 0.0060463 11 6 2 0 0 0 0.6889 1 9441 9441 2.4348 0 1 700810 77543 8282;10574 51850 52958 90220 90220 -0.02776632348059138 YGKDFHLI 8 Unmodified _YGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.7639465332031 2 496.763635 991.512717 0.49643 0.00024661 1.4649 0.00072772 1.9614 0.00097433 496.76392502526073 46.609 0.25753 46.609 46.461 46.718 0 26 11 3 0 0 0 0.21098 1 25468 25468 68.081 37.856 1 2658600 77544 10055 51851 52959 90221 90221 0.01662088760087954 YGKDFHLI 8 Unmodified _YGKDFHLI_ 0 0 0 nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 nc|ENSG00000198160|Q8N108-19|MIER1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.763916015625 2 496.763635 991.512717 NaN NaN NaN NaN NaN NaN NaN 46.76 1 46.423 45.923 46.923 -0.33664 0 0 0 0.15434 1 25041 25041 88.954 39.285 1 77545 10055 51851 52959 90222 90222 0.01662088760087954 YGKINVLG 8 Unmodified _YGKINVLG_ 0 0 0 REV__nc|ENSG00000066933|B2RTY4-5|MYO9A REV__nc|ENSG00000066933|B2RTY4-5|MYO9A MSMS AL20221201_MKP_PDAC_01 4 432.2528686523438 2 432.252903 862.491253 NaN NaN NaN NaN NaN NaN NaN 14.502 1 11.999 11.499 12.499 -2.5029 0 0 0 0.97444 1 7370 7370 0.79363 0 1 + 77546 17411 51852 52960 90223 90223 0.054507037313896944 YGLDFSVVL 9 Unmodified _YGLDFSVVL_ 0 0 0 ENST00000498453.1_1_5:130325830-130326118:+|nuORF ENST00000498453.1_1_5:130325830-130326118:+|nuORF ENST00000498453.1_1_5:130325830-130326118:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7720031738281 2 506.771126 1011.5277 0.19574 9.9196E-05 0.49469 0.00025069 0.69043 0.00034989 506.7713760029152 79.227 0.52105 78.741 78.372 78.893 -0.48596 34 22 3 0 0 0 0.46577 1 43414 43414 9.3474 0 1 1018900 77547 14424 51853 52961 90224 90224 0.022395358374410534 YGLDFSVVL 9 Unmodified _YGLDFSVVL_ 0 0 0 ENST00000498453.1_1_5:130325830-130326118:+|nuORF ENST00000498453.1_1_5:130325830-130326118:+|nuORF ENST00000498453.1_1_5:130325830-130326118:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 506.771126 1011.5277 0.41576 0.00021069 0.58589 0.00029691 1.0016 0.0005076 506.7710586943522 78.7 0.27558 78.7 78.575 78.851 0 -0.02075 5.3921E-05 NaN 9.3474 21 12 3 NaN NaN NaN NaN 0 NaN NaN 0 695550 77548 14424 51853 52961 0.022395358374410534 YGLEHIFF 8 Unmodified _YGLEHIFF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.25830078125 2 513.258185 1024.50182 NaN NaN NaN NaN NaN NaN NaN 78.601 1 78.601 78.101 79.101 0 0 0 0 0.97444 1 43677 43677 0.79363 0 1 77549 4538 51854 52962 90225 90225 -0.00945313614170118 YGLEKFWAF 9 Unmodified _YGLEKFWAF_ 0 0 0 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1;nc|ENSG00000155506|Q6PKG0-3|LARP1 ENSG00000155506|ENST00000518297|LARP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.7919311523438 2 580.792392 1159.57023 0.0072501 4.2108E-06 -0.90858 -0.0005277 -0.90133 -0.00052348 580.7917311762266 98.835 0.11345 92.66 92.615 92.728 -6.1757 14 8 2 0 0 0 0.012668 1 65653 65653 72.968 36.924 1 35450000 77550 6391;16287 51855 52963 90226 90226 -0.0031706903434951528 YGLIGRELWS 10 Unmodified _YGLIGRELWS_ 0 0 0 nc|ENSG00000102539|O43193-2|MLNR;ENSG00000102539|ENST00000218721|MLNR nc|ENSG00000102539|O43193-2|MLNR nc|ENSG00000102539|O43193-2|MLNR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.3189697265625 2 597.319306 1192.62406 0.13737 8.2054E-05 0.80404 0.00048027 0.94141 0.00056232 597.3193055399223 74.502 0.55303 74.548 74.281 74.834 0.045959 49 24 3 0 0 0 0.66287 1 41005 41005 11.495 11.495 1 1917100 77551 2050 51856 52964 90227 90227 0.03545103397368621 YGLIHNRF 8 Unmodified _YGLIHNRF_ 0 0 0 REV__nc|ENSG00000102001|O60840-5|CACNA1F REV__nc|ENSG00000102001|O60840-5|CACNA1F MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.7735290527344 2 510.274701 1018.53485 0.31023 0.0001583 -1.7132 -0.0008742 -1.403 -0.0007159 510.7739885316041 84.496 0.36099 83.997 83.841 84.202 -0.49961 58 16 5 0 0 0 0.80624 1 46311 46311 2.8892 0 1 1913700 + 77552 18213 51857 52965 90228 90228 0.026323132285142492 YGLLSGCDI 9 Unmodified _YGLLSGCDI_ 0 0 0 REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 940.4444580078125 1 940.444445 939.437169 0.67207 0.00063204 -1.1999 -0.0011285 -0.52784 -0.00049641 940.4440323564473 75.339 0.23994 74.862 74.74 74.98 -0.47714 18 13 2 0 0 0 0.14602 1 41224 41224 28.487 0 1 1162200 + 77553 22319 51858 52966 90229 90229 -0.034972564824897745 YGLPVVVKL 9 Unmodified _YGLPVVVKL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.3155517578125 2 494.315503 986.616454 0.3964 0.00019595 0.055721 2.7544E-05 0.45212 0.00022349 494.3156036657724 75.851 0.24059 75.899 75.797 76.037 0.047943 18 10 2 0 0 0 0.047196 1 41856 41856 46.021 34.381 1 3040300 77554 7707 51859 52967 90230 90230 0.12260995867757174 YGLPVVVKL 9 Unmodified _YGLPVVVKL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.3165588378906 2 494.315503 986.616454 0.95166 0.00047042 -0.27847 -0.00013765 0.67319 0.00033277 494.31557951296685 90.129 0.40522 83.953 83.651 84.057 -6.1757 32 22 2 0 0 0 0.1773 1 59504 59504 25.399 15.216 1 5785100 77555 7707 51859 52967 90231 90231 0.12260995867757174 YGLSTVHAF 9 Unmodified _YGLSTVHAF_ 0 0 0 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7536315917969 2 497.753267 993.491981 0.38388 0.00019108 -0.59855 -0.00029793 -0.21467 -0.00010685 497.75276378010824 91.155 0.47159 90.66 90.44 90.911 -0.49457 36 21 2 0 0 0 0.48152 1 49865 49865 8.5933 0.68312 1 1020300 + 77556 24179 51860 52968 90232 90232 -0.005025016195872922 YGLSTVHAF 9 Unmodified _YGLSTVHAF_ 0 0 0 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 497.753267 993.491981 0.27561 0.00013719 -0.72426 -0.0003605 -0.44865 -0.00022332 497.752549061359 90.589 0.27126 90.589 90.47 90.741 0 -0.035402 -8.3723E-05 NaN 8.5933 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 305250 + 77557 24179 51860 52968 -0.005025016195872922 YGLSTVHAF 9 Unmodified _YGLSTVHAF_ 0 0 0 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 REV__nc|ENSG00000204519|Q7Z340-3|ZNF551 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 497.753267 993.491981 0.38388 0.00019108 -0.59855 -0.00029793 -0.21467 -0.00010685 497.75276378010824 91.155 0.47159 90.66 90.44 90.911 -0.49457 0.035402 4.1428E-05 NaN 8.5933 36 21 2 NaN NaN NaN NaN 0 NaN NaN 0 1020300 + 77558 24179 51860 52968 -0.005025016195872922 YGLWALYMPEN 11 Unmodified _YGLWALYMPEN_ 0 0 0 REV__ENSG00000115850|ENST00000264162|LCT REV__ENSG00000115850|ENST00000264162|LCT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 678.8193969726562 2 678.818281 1355.62201 0.042281 2.8701E-05 0.11251 7.6374E-05 0.15479 0.00010508 678.818414060334 31.83 0.16784 31.7 31.601 31.769 -0.12915 16 6 3 0 0 0 0.67371 1 16556 16556 6.7232 1.8262 1 2182000 + 77559 19010 51861 52969 90233 90233 -0.04157693402771656 YGLYVLPLS 9 Unmodified _YGLYVLPLS_ 0 0 0 REV__ENSG00000101337|ENST00000398022|TM9SF4 REV__ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.7891235351562 2 512.789318 1023.56408 0.38767 0.00019879 -0.80661 -0.00041362 -0.41894 -0.00021483 512.7882254150813 84.589 0.63719 84.09 83.753 84.39 -0.49961 36 28 2 0 0 0 0.49272 1 46169 46169 7.9102 0 1 695330 + 77560 18161 51862 52970 90234 90234 0.05324412734148609 YGMLDQWIR 9 Unmodified _YGMLDQWIR_ 0 0 0 REV__ENST00000369046.8_1_6:107102725-107103567:+|nuORF REV__ENST00000369046.8_1_6:107102725-107103567:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.29248046875 2 591.292233 1180.56991 0.037577 2.2219E-05 0.10621 6.2801E-05 0.14379 8.502E-05 591.2923898086374 53.122 0.79557 53.059 52.704 53.499 -0.063423 81 39 3 0 0 0 0.32871 1 28916 28916 15.847 3.3156 1 3374700 + 77561 26027 51863 52971 90235 90235 -0.013148120258392737 YGMNQKKETHC 11 Unmodified _YGMNQKKETHC_ 0 0 0 REV__ENSG00000198722|ENST00000635942|UNC13B REV__ENSG00000198722|ENST00000635942|UNC13B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 669.7976684570312 2 669.800097 1337.58564 NaN NaN NaN NaN NaN NaN NaN 27.335 1 27.289 26.789 27.789 -0.046408 0 0 0 0.76766 1 14085 14085 13.615 3.4643 1 + 77562 24045 51864 52972 90236 90236 -0.06964893571102948 YGMPSTHAM 9 Unmodified _YGMPSTHAM_ 0 0 0 nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 nc|ENSG00000163082|Q8IWX5-2|SGPP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 497.308837890625 2 497.709688 993.404823 1.3081 0.00065106 -0.81671 -0.00040649 0.49139 0.00024457 497.7092307414351 37.642 0.27344 33.273 33.091 33.364 -4.3689 28 16 2 0 0 0 0.15672 1 22046 22046 20.454 2.3186 1 7385100 77563 6949 51865 52973 90237 90237 -0.09214367157153447 YGMRRSLDFF 10 Unmodified _YGMRRSLDFF_ 0 0 0 REV__ENSG00000163285|ENST00000295452|GABRG1 REV__ENSG00000163285|ENST00000295452|GABRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.5455932617188 3 431.213252 1290.61793 0.16761 7.2277E-05 -0.51755 -0.00022317 -0.34994 -0.0001509 431.5459576483833 16.254 0.14539 16.26 16.178 16.323 0.0050564 26 11 4 0 0 0 0.6966 1 8149 8149 1.5923 1.0863 1 865630 + 77564 21742 51866 52974 90238 90238 -0.01575738105793789 YGMTWQLHEL 10 Unmodified _YGMTWQLHEL_ 0 0 0 REV__ENSG00000154654|ENST00000400546|NCAM2 REV__ENSG00000154654|ENST00000400546|NCAM2 MSMS AL20221201_MKP_PDAC_01 4 639.3028564453125 2 639.302798 1276.59104 NaN NaN NaN NaN NaN NaN NaN 83.395 1 77.22 76.72 77.72 -6.1757 0 0 0 0.73897 1 54838 54838 22.736 8.8302 1 + 77565 21238 51867 52975 90239 90239 -0.036188467169949945 YGNKMEQNQT 10 Unmodified _YGNKMEQNQT_ 0 0 0 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 ENSG00000163637|ENST00000638394|PRICKLE2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8489990234375 3 404.848638 1211.52409 1.3117 0.00053106 -0.66752 -0.00027024 0.64423 0.00026082 404.8484374154803 21.299 0.22641 18.564 18.43 18.656 -2.7348 31 16 3 0 0 0 0.62068 1 11363 11363 5.7834 1.6668 1 13038000 77566 7039 51868 52976 90240 90240 -0.07321501998740132 YGNPAGLGPM 10 Oxidation (M) _YGNPAGLGPM(Oxidation (M))_ YGNPAGLGPM(1) YGNPAGLGPM(42) 0 0 1 REV__ENSG00000262152|ENST00000573315|GREP1 REV__ENSG00000262152|ENST00000573315|GREP1 MSMS AL20221201_MKP_PDAC_01 4 496.7274169921875 2 496.728935 991.443317 NaN NaN NaN NaN NaN NaN NaN 35.449 1 31.257 30.757 31.757 -4.1928 0 0 0 0.21264 1 20564 20564 42.095 15.211 1 + 77567 24589 51869 52977 90241 90241 1857 -0.05274738250966493 YGNTPDKMEY 10 Unmodified _YGNTPDKMEY_ 0 0 0 REV__nc|ENSG00000183853|Q96J84-3|KIRREL1 REV__nc|ENSG00000183853|Q96J84-3|KIRREL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2623291015625 2 609.260796 1216.50704 0.31099 0.00018947 -0.53498 -0.00032595 -0.224 -0.00013647 609.2602739467345 39.042 0.31887 39.042 38.858 39.177 0 35 14 3 0 0 0 0.60623 1 20867 20867 10.824 0 1 5351800 + 77568 23381 51870 52978 90242 90242 -0.09255422604564956 YGNVNEFRF 9 Unmodified _YGNVNEFRF_ 0 0 0 REV__nc|ENSG00000070669|P08243-2|ASNS REV__nc|ENSG00000070669|P08243-2|ASNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.2733154296875 2 573.272355 1144.53016 0.33114 0.00018984 -0.11575 -6.6355E-05 0.2154 0.00012348 573.2724525933046 50.986 0.2607 50.932 50.766 51.026 -0.053871 26 12 3 0 0 0 0.23158 1 27548 27548 20.454 4.6064 1 7728500 + 77569 17476 51871 52979 90243 90243 -0.03632615704896125 YGPEPCTDNS 10 Unmodified _YGPEPCTDNS_ 0 0 0 ENST00000595416.1_1_19:15484595-15489930:-|nuORF;ENSG00000105127|ENST00000269701|AKAP8 ENST00000595416.1_1_19:15484595-15489930:-|nuORF ENST00000595416.1_1_19:15484595-15489930:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.4744873046875 3 361.47469 1081.40224 -0.91307 -0.00033005 0.99831 0.00036086 0.08524 3.0812E-05 361.47497339403907 32.874 0.3497 32.874 32.658 33.008 0 36 17 3 0 0 0 0.69917 1 17148 17148 1.4551 0 1 3012700 77570 2276 51872 52980 90244 90244 -0.13520544081120534 YGPGEAAA 8 Unmodified _YGPGEAAA_ 0 0 0 REV__ENSG00000188981|ENST00000438480|MSANTD1 REV__ENSG00000188981|ENST00000438480|MSANTD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.1689147949219 2 368.169036 734.323519 0.86974 0.00032021 -0.54574 -0.00020093 0.32399 0.00011928 368.16884448996063 66.029 0.41506 66.039 65.768 66.183 0.0095596 35 20 2 0 0 0 0.80992 1 36139 36139 0.69038 0 1 10535000 + 77571 23747 51873 52981 90245 90245 -0.0542698353325477 YGPGRVGEFI 10 Unmodified _YGPGRVGEFI_ 0 0 0 REV__ENST00000373401.2_1_6:37605146-37606471:-|nuORF REV__ENST00000373401.2_1_6:37605146-37606471:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5239562988281 3 365.525825 1093.55564 0.81564 0.00029814 -2.5414 -0.00092894 -1.7257 -0.0006308 365.5248880676742 23.585 0.42118 20.758 20.46 20.881 -2.8273 35 25 2 0 0 0 0.56348 1 12671 12671 7.9454 0.84368 1 3296400 + 77572 18787 51874 52982 90246 90246 0.012608588175226032 YGPLLCPKLF 10 Unmodified _YGPLLCPKLF_ 0 0 0 REV__nc|ENSG00000177575|Q86VB7-4|CD163 REV__nc|ENSG00000177575|Q86VB7-4|CD163 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.2149658203125 3 384.215822 1149.62564 0.58013 0.00022289 -0.013099 -5.0327E-06 0.56703 0.00021786 384.2158015048954 16.502 0.079338 13.945 13.889 13.968 -2.557 17 10 2 0 0 0 0.69626 1 8561 8561 3.3196 0.24738 1 1301200 + 77573 29807 51875 52983 90247 90247 0.05681021161763056 YGPRKVDTF 9 Unmodified _YGPRKVDTF_ 0 0 0 REV__ENSG00000150459|ENST00000382533|SAP18;REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF REV__ENSG00000150459|ENST00000382533|SAP18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7853393554688 2 541.785099 1081.55564 -0.17442 -9.4498E-05 -0.51171 -0.00027724 -0.68613 -0.00037173 541.7851508276818 45.471 0.10864 45.147 45.086 45.195 -0.32425 9 5 2 0 0 0 0.12424 1 24300 24300 30.637 10.183 1 5177800 + 77574 21026;27008 51876 52984 90248 90248 0.018128588175159166 YGQKVIDNF 9 Unmodified _YGQKVIDNF_ 0 0 0 REV__ENSG00000101134|ENST00000262593|DOK5 REV__ENSG00000101134|ENST00000262593|DOK5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2783813476562 2 542.277106 1082.53966 1.0351 0.00056132 0.38783 0.00021031 1.4229 0.00077163 542.2777069279751 63.677 1.4321 57.501 56.964 58.396 -6.1757 222 79 6 0 0 0 0.32871 1 41071 41071 15.847 1.9411 1 87514000 + 77575 18132 51877 52985 90249 90249 0.0016915258061089844 YGRCRAQL 8 Unmodified _YGRCRAQL_ 0 0 0 REV__ENSG00000140575|ENST00000268182|IQGAP1 REV__ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7508544921875 2 483.750536 965.486519 0.54164 0.00026202 -0.23301 -0.00011272 0.30863 0.0001493 483.7502438915898 91.461 0.094986 90.966 90.911 91.006 -0.49457 6 4 2 0 0 0 0.80975 1 50007 50007 0.79363 0 1 215270 + 77576 20486 51878 52986 90250 90250 0.002394963169535913 YGRCRAQL 8 Unmodified _YGRCRAQL_ 0 0 0 REV__ENSG00000140575|ENST00000268182|IQGAP1 REV__ENSG00000140575|ENST00000268182|IQGAP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 483.750536 965.486519 0.54164 0.00026202 -0.23301 -0.00011272 0.30863 0.0001493 483.7502438915898 91.461 0.094986 90.966 90.911 91.006 -0.49457 0 0 NaN 0.79363 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 215270 + 77577 20486 51878 52986 0.002394963169535913 YGRCSGNEVY 10 Unmodified _YGRCSGNEVY_ 0 0 0 nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1;ENST00000498426.5_1_1:196286396-196434478:-|nuORF;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000162687|Q6UVM3-2|KCNT2 nc|ENSG00000107147|Q5JUK3-4|KCNT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2466430664062 2 574.24548 1146.47641 0.4771 0.00027397 1.4659 0.00084181 1.943 0.0011158 574.245892892199 47.201 0.42865 47.201 46.999 47.427 0 53 19 5 0 0 0 0.54684 1 25895 25895 13.906 0 1 18179000 77578 2476;6892 51879 52987 90251 90251 -0.09097156198936318 YGREHFLYQG 10 Unmodified _YGREHFLYQG_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.30078125 2 635.304187 1268.59382 -0.56816 -0.00036095 -1.8525 -0.0011769 -2.4207 -0.0015379 635.3031062807969 33.682 0.23494 33.523 33.414 33.649 -0.15918 24 9 3 0 0 0 0.48505 1 17564 17564 17.113 6.3134 1 5510400 77579 1684 51880 52988 90252 90252 -0.029732552678069624 YGREHFLYQG 10 Unmodified _YGREHFLYQG_ 0 0 0 ENSG00000099139|ENST00000674117|PCSK5;nc|ENSG00000099139|Q92824|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 ENSG00000099139|ENST00000674117|PCSK5 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 635.304187 1268.59382 0.69344 0.00044054 -4.6698 -0.0029667 -3.9763 -0.0025262 635.3013590466097 38.229 0.19791 33.86 33.702 33.9 -4.3689 0.16855 -0.0031869 NaN 17.113 13 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6296100 77580 1684 51880 52988 -0.029732552678069624 YGRFRHFL 8 Unmodified _YGRFRHFL_ 0 0 0 ENST00000485057.5_1_2:73247283-73302735:-|nuORF;ENST00000461352.5_1_2:73172212-73286292:-|nuORF;ENST00000416579.5_1_2:73200539-73298852:-|nuORF;ENSG00000144040|ENST00000272433|SFXN5;ENST00000474528.5_1_2:73172153-73286292:-|nuORF;ENST00000484123.1_1_2:73280515-73298756:-|nuORF ENST00000485057.5_1_2:73247283-73302735:-|nuORF ENST00000485057.5_1_2:73247283-73302735:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.296630859375 2 548.295968 1094.57738 0.10064 5.5182E-05 -0.28496 -0.00015624 -0.18431 -0.00010106 548.2958254428736 14.566 0.093836 12.063 12.008 12.101 -2.5029 26 15 2 0 0 0 0.80232 1 7388 7388 5.2307 1.2863 1 2092000 77581 5579 51881 52989 90253 90253 0.03387708356740404 YGRHLYFW 8 Unmodified _YGRHLYFW_ 0 0 0 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 ENSG00000085871|ENST00000265498|MGST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2821044921875 2 571.282526 1140.5505 NaN NaN NaN NaN NaN NaN NaN 94.6 1 94.179 93.679 94.679 -0.42044 0 0 0 0.97444 1 51681 51681 0 0 1 77582 1422 51882 52990 90254 90254 -0.01415400254427368 YGRLEMYHAI 10 Unmodified _YGRLEMYHAI_ 0 0 0 REV__ZSWIM5|p.R1005H|1|0.23|ENSG00000162415|chr1:45018998-45018998|C/T|missense_variant REV__ZSWIM5|p.R1005H|1|0.23|ENSG00000162415|chr1:45018998-45018998|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.2112731933594 3 418.209619 1251.60703 0.83756 0.00035028 2.1646 0.00090526 3.0022 0.0012555 418.21076750190264 80.893 0.28661 80.401 80.201 80.487 -0.49247 28 12 3 0 0 0 0.7191 1 44252 44252 0.77653 0.078866 1 1051700 + 77583 30146 51883 52991 90255 90255 -0.008711404800806122 YGRPCESLVTF 11 Unmodified _YGRPCESLVTF_ 0 0 0 ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96 ENSG00000153283|ENST00000352690|CD96 ENSG00000153283|ENST00000352690|CD96 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.3079833984375 2 636.308081 1270.60161 0.03058 1.9458E-05 -0.55961 -0.00035608 -0.52903 -0.00033663 636.3079185190542 56.459 0.58524 56.39 56.134 56.72 -0.068741 116 29 5 0 0 0 0.26767 1 30816 30816 28.495 0 1 125500000 77584 6254 51884 52992 90256 90256 -0.0228686406255747 YGRSLGLY 8 Unmodified _YGRSLGLY_ 0 0 0 ENST00000498311.5_1_17:7604102-7606801:+|nuORF;ENST00000467699.5_1_17:7605498-7605885:+|nuORF;ENST00000471973.6_1_17:7605498-7606165:+|nuORF;ENSG00000141499|ENST00000396463|WRAP53 ENST00000498311.5_1_17:7604102-7606801:+|nuORF ENST00000498311.5_1_17:7604102-7606801:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 465.2272338867188 2 464.747985 927.481417 0.15175 7.0526E-05 0.68942 0.00032041 0.84117 0.00039093 464.74865578272187 24.094 0.19499 24.094 23.995 24.19 0 15 9 2 0 0 0 8.7369 1 12342 12342 6.3541 0 1 957720 77585 14420 51885 52993 90257 90257 0.014775157260032756 YGSGESCQDSE 11 Unmodified _YGSGESCQDSE_ 0 0 0 REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF REV__ENST00000446673.5_1_3:42544163-42573332:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 581.2059936523438 2 581.203675 1160.3928 NaN NaN NaN NaN NaN NaN NaN 109.74 1 103.56 103.06 104.06 -6.1757 0 0 0 0.94165 1 73271 73271 1.3295 0.80477 1 + 77586 27145 51886 52994 90258 90258 -0.18098357157327882 YGSGNYNDF 9 Unmodified _YGSGNYNDF_ 0 0 0 nc|ENSG00000122566|P22626|HNRNPA2B1;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF nc|ENSG00000122566|P22626|HNRNPA2B1 nc|ENSG00000122566|P22626|HNRNPA2B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7037353515625 2 518.703971 1035.39339 0.6692 0.00034712 -0.21935 -0.00011378 0.44985 0.00023334 518.7039493948571 44.537 0.43339 39.685 39.471 39.905 -4.852 52 34 2 0 0 0 0.008678 2 27272 27152;27272 88.904 62.02 1 35607000 77587 16163 51887 52995 90259;90260 90260 -0.12289149655271103 YGSLEFEKY 9 Unmodified _YGSLEFEKY_ 0 0 0 REV__nc|ENSG00000119684|Q9UHC1-2|MLH3 REV__nc|ENSG00000119684|Q9UHC1-2|MLH3 MSMS AL20221201_MKP_PDAC_01 4 568.2713623046875 2 568.268947 1134.52334 NaN NaN NaN NaN NaN NaN NaN 20.346 1 17.653 17.153 18.153 -2.693 0 0 0 0.7818 1 10838 10838 6.7232 1.9672 1 + 77588 19201 51888 52996 90261 90261 -0.038539733761354 YGSPFSESSD 10 Unmodified _YGSPFSESSD_ 0 0 0 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7506713867188 2 538.214369 1074.41418 0.14647 7.8831E-05 0.512 0.00027556 0.65847 0.0003544 538.2151533528926 66.817 0.30888 66.334 66.194 66.503 -0.48323 28 14 3 0 0 0 0.22811 1 36550 36550 14.838 4.7643 1 1510200 77589 8876 51889 52997 90262 90262 -0.12004604066260072 YGSRKGIG 8 Unmodified _YGSRKGIG_ 0 0 0 REV__ENST00000437839.5_3_2:160412364-160472039:-|nuORF REV__ENST00000437839.5_3_2:160412364-160472039:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 837.4590454101562 1 837.457727 836.450451 -0.38272 -0.00032051 2.2284 0.0018662 1.8457 0.0015457 837.4591848279833 104.59 0.043922 104.54 104.51 104.55 -0.048737 6 3 2 0 0 0 0.81107 1 58074 58074 0 0 1 4002300 + 77590 27045 51890 52998 90263 90263 0.025683624117732506 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7723388671875 2 574.772188 1147.52982 0.82778 0.00047579 -0.46802 -0.00026901 0.35976 0.00020678 574.7718437176335 47.178 0.3996 46.826 46.685 47.085 -0.3526 31 19 2 0 0 0 0.23158 1 25386 25386 20.454 2.3073 1 3400400 77591 5851 51891 52999 90264 90264 -0.03804035424764152 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7734375 2 574.772188 1147.52982 1.2402 0.00071284 -0.36775 -0.00021137 0.87247 0.00050147 574.77199848082 46.97 1.2566 46.937 46.267 47.523 -0.033421 205 61 5 0 0 0 0.23158 5 25010 25010;25112;25216;25320;25427 20.454 2.3073 1 88176000 77592 5851 51891 52999 90265;90266;90267;90268;90269 90265 -0.03804035424764152 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 574.7725219726562 2 574.772188 1147.52982 0.42166 0.00024236 -0.61855 -0.00035553 -0.19689 -0.00011317 574.771723908268 48.635 1.8664 48.591 47.902 49.768 -0.04369 268 93 4 0 0 0 0.16226 4 26233 26047;26233;26339;26442 26.884 4.7636 1 27608000 77593 5851 51891 52999 90270;90271;90272;90273 90271 -0.03804035424764152 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7731323242188 2 574.772188 1147.52982 1.0819 0.00062182 0.017898 1.0287E-05 1.0998 0.00063211 574.7727103926688 42.742 0.72747 38.057 37.858 38.585 -4.6846 116 47 4 0 0 0 0.23158 2 25914 25914;26055 20.454 1.1966 1 136790000 77594 5851 51891 52999 90274;90275 90274 -0.03804035424764152 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7732543945312 2 574.772188 1147.52982 0.84288 0.00048446 0.050851 2.9228E-05 0.89373 0.00051369 574.7723805158905 53.073 0.96332 47.269 46.747 47.711 -5.8042 163 56 4 0 0 0 0.23158 4 33367 33367;33483;33610;33737 20.454 1.1966 1 175290000 77595 5851 51891 52999 90276;90277;90278;90279 90276 -0.03804035424764152 YGSRLDYFQ 9 Unmodified _YGSRLDYFQ_ 0 0 0 nc|ENSG00000147439|Q9NQY0-2|BIN3;ENSG00000147439|ENST00000276416|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 nc|ENSG00000147439|Q9NQY0-2|BIN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7718505859375 2 574.772188 1147.52982 1.1084 0.00063709 -0.84638 -0.00048647 0.26205 0.00015062 574.7717488327717 55.086 2.0448 49.165 48.626 50.671 -5.9211 253 123 4 0 0 0 0.16226 2 35200 35200;35333 26.884 2.3073 1 270170000 77596 5851 51891 52999 90280;90281 90280 -0.03804035424764152 YGSSFDMDYD 10 Unmodified _YGSSFDMDYD_ 0 0 0 ENST00000457130.2_1_X:143922603-143922738:+|nuORF ENST00000457130.2_1_X:143922603-143922738:+|nuORF ENST00000457130.2_1_X:143922603-143922738:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.4789733886719 3 400.4781 1198.41247 NaN NaN NaN NaN NaN NaN NaN 65.484 1 65 64.5 65.5 -0.48428 0 0 0 1.0019 1 35742 35742 0.15932 0.01943 1 77597 13605 51892 53000 90282 90282 -0.17879981146529644 YGSSPVSWTF 10 Unmodified _YGSSPVSWTF_ 0 0 0 REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2 REV__nc|ENSG00000188176|Q2TAL5-2|SMTNL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.759765625 2 565.761289 1129.50803 NaN NaN NaN NaN NaN NaN NaN 68.61 1 68.129 67.629 68.629 -0.48071 0 0 0 0.91523 1 37499 37499 7.2892 2.0586 1 + 77598 23695 51893 53001 90283 90283 -0.051548401733498395 YGSSYNPPYV 10 Unmodified _YGSSYNPPYV_ 0 0 0 nc|ENSG00000064655|O00167-3|EYA2;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000064655|ENST00000327619|EYA2 nc|ENSG00000064655|O00167-3|EYA2 nc|ENSG00000064655|O00167-3|EYA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.759765625 2 573.758746 1145.50294 0.33187 0.00019042 0.050892 2.92E-05 0.38277 0.00021961 573.7586321762428 65.451 0.4982 64.967 64.791 65.289 -0.48428 44 22 3 0 0 0 0.54684 2 35675 35675;35774 13.906 3.0821 1 14317000 77599 881 51894 53002 90284;90285 90284 -0.0639914403595867 YGSTEEEME 9 Unmodified _YGSTEEEME_ 0 0 0 REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2805786132812 2 537.700237 1073.38592 0.65859 0.00035412 1.8367 0.00098761 2.4953 0.0013417 537.7008897586986 49.633 0.13854 49.633 49.51 49.649 0 8 5 2 0 0 0 0.21473 1 27276 27276 4.3292 1.44 1 2077900 + 77600 18241 51895 53003 90286 90286 -0.14783670037877528 YGSYFVPA 8 Unmodified _YGSYFVPA_ 0 0 0 ENST00000505994.1_1_4:120314876-120316112:-|nuORF ENST00000505994.1_1_4:120314876-120316112:-|nuORF ENST00000505994.1_1_4:120314876-120316112:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 903.4267578125 1 903.424696 902.417419 0.057709 5.2136E-05 0.70138 0.00063364 0.75909 0.00068578 903.4255504446783 103.12 0.070618 103.12 103.06 103.13 0 7 4 2 0 0 0 0.80676 1 56853 56853 2.5775 0 1 1302300 77601 14518 51896 53004 90287 90287 -0.03769264430957264 YGSYWDEF 8 Unmodified _YGSYWDEF_ 0 0 0 REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14 REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14 MSMS AL20221201_MKP_PDAC_01 4 356.1449584960938 3 356.143269 1065.40798 NaN NaN NaN NaN NaN NaN NaN 40.758 1 36.228 35.728 36.728 -4.5294 0 0 0 0.97444 1 24381 24381 1.6526 0.58116 1 + 77602 21720 51897 53005 90288 90288 -0.12211077507140544 YGTFTIKSDV 10 Unmodified _YGTFTIKSDV_ 0 0 0 ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK;ENST00000469765.5_1_1:32745435-32751314:+|nuORF ENSG00000182866|ENST00000336890|LCK ENSG00000182866|ENST00000336890|LCK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.530029296875 3 377.529123 1129.56554 0.48894 0.00018459 1.5395 0.00058121 2.0284 0.0007658 377.5296857574867 47.685 0.33094 47.646 47.518 47.849 -0.038647 28 15 3 0 0 0 0.63399 1 25710 25710 5.4027 2.7715 1 2826200 77603 9095 51898 53006 90289 90289 0.005940020322441342 YGTFTYGSAKC 11 Unmodified _YGTFTYGSAKC_ 0 0 0 REV__nc|ENSG00000211934|P23083|IGHV1-2 REV__nc|ENSG00000211934|P23083|IGHV1-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2660522460938 2 599.265881 1196.51721 0.37656 0.00022566 -3.3845 -0.0020282 -3.008 -0.0018026 599.2637951596649 36.329 0.17984 36.329 36.269 36.448 0 14 8 2 0 0 0 0.48615 1 19310 19310 17.113 1.2657 1 1913200 + 77604 29934 51899 53007 90290 90290 -0.0731881487931787 YGTLGVSNAVE 11 Unmodified _YGTLGVSNAVE_ 0 0 0 REV__ENSG00000273079|ENST00000609686|GRIN2B REV__ENSG00000273079|ENST00000609686|GRIN2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.2788696289062 2 555.277303 1108.54005 1.1346 0.00063001 0.96791 0.00053746 2.1025 0.0011675 555.7791384962832 71.85 0.38198 65.675 65.537 65.919 -6.1757 32 21 2 0 0 0 0.39949 2 46928 46928;47044 21.537 0.80181 1 33652000 + 77605 24633 51900 53008 90291;90292 90291 -0.009874724901919762 YGTLIFMYVRP 11 Unmodified _YGTLIFMYVRP_ 0 0 0 ENSG00000196578|ENST00000358642|OR5AC2 ENSG00000196578|ENST00000358642|OR5AC2 ENSG00000196578|ENST00000358642|OR5AC2 MSMS AL20221201_MKP_PDAC_01 4 680.3623046875 2 680.360116 1358.70568 NaN NaN NaN NaN NaN NaN NaN 44.624 1 39.772 39.272 40.272 -4.852 0 0 0 0.91362 1 27264 27264 12.241 0 1 77606 9844 51901 53009 90293 90293 0.0406746276494232 YGTVYLVYRF 10 Unmodified _YGTVYLVYRF_ 0 0 0 REV__nc|ENSG00000118961|Q9H6V9-4|LDAH REV__nc|ENSG00000118961|Q9H6V9-4|LDAH MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.2318725585938 3 427.560646 1279.66011 0.52101 0.00022276 0.14344 6.1331E-05 0.66445 0.00028409 427.5606602810418 84.624 1.4011 78.448 77.508 78.909 -6.1757 298 78 5 0 0 0 0.44373 1 55163 55163 12.175 4.5658 1 623180000 + 77607 19175 51902 53010 90294 90294 0.03146560574191426 YGVHRRSG 8 Unmodified _YGVHRRSG_ 0 0 0 REV__ENST00000598188.5_2_19:17389872-17389989:+|nuORF REV__ENST00000598188.5_2_19:17389872-17389989:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.2471313476562 2 466.246475 930.478397 NaN NaN NaN NaN NaN NaN NaN 69.579 1 69.579 69.079 70.079 0 0 0 0 0.97444 1 38764 38764 0.79363 0 1 + 77608 29231 51903 53011 90295 90295 0.01037685391861487 YGVQLFIKLD 10 Unmodified _YGVQLFIKLD_ 0 0 0 REV__ENST00000469361.5_1_14:39628635-39628686:-|nuORF REV__ENST00000469361.5_1_14:39628635-39628686:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.2293395996094 3 399.228897 1194.66486 0.98887 0.00039479 -0.46287 -0.00018479 0.526 0.00020999 399.22870150611135 83.265 1.0475 77.09 76.355 77.403 -6.1757 85 57 2 0 0 0 0.64628 1 54862 54862 5.0475 0 1 15263000 + 77609 27464 51904 53012 90296 90296 0.0753144471698306 YGVQNYVT 8 Unmodified _YGVQNYVT_ 0 0 0 nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251;ENST00000546044.1_1_12:122372233-122387003:+|nuORF nc|ENSG00000158023|Q8TBY9-2|CFAP251 nc|ENSG00000158023|Q8TBY9-2|CFAP251 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7567138671875 2 472.229625 942.444697 0.49458 0.00023355 0.60072 0.00028368 1.0953 0.00051723 472.2298501547518 63.023 0.22935 62.537 62.48 62.709 -0.48617 16 10 2 0 0 0 8.7369 1 34450 34450 2.5775 0 1 1294700 77610 6561 51905 53013 90297 90297 -0.028827808905589336 YGVSVFAESL 10 Unmodified _YGVSVFAESL_ 0 0 0 REV__ENSG00000149256|ENST00000278550|TENM4 REV__ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 536.2704467773438 2 536.27149 1070.52843 0.41773 0.00022402 -1.5221 -0.00081626 -1.1044 -0.00059224 536.271222346579 52.091 0.27936 51.657 51.55 51.83 -0.43367 28 13 3 0 0 0 0.092434 1 28115 28115 48.346 6.2513 1 9343100 + 77611 20987 51906 53014 90298 90298 -0.0040166951350784075 YGVSVFAESL 10 Unmodified _YGVSVFAESL_ 0 0 0 REV__ENSG00000149256|ENST00000278550|TENM4 REV__ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2723388671875 2 536.27149 1070.52843 0.16755 8.9855E-05 0.0016571 8.8863E-07 0.16921 9.0744E-05 536.2716962079253 57.958 0.47547 51.931 51.698 52.173 -6.0275 67 26 3 0 0 0 0.14917 1 37022 37022 39.957 0.0076237 1 146680000 + 77612 20987 51906 53014 90299 90299 -0.0040166951350784075 YGWEMTFLI 9 Unmodified _YGWEMTFLI_ 0 0 0 nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 nc|ENSG00000004846|Q2M3G0-1|ABCB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2788696289062 2 580.27826 1158.54197 NaN NaN NaN NaN NaN NaN NaN 81.184 1 80.691 80.191 81.191 -0.49247 0 0 0 0.82015 1 44457 44457 5.2307 0.47466 1 77613 286 51907 53015 90300 90300 -0.030961350059214965 YGWRCTTNE 9 Unmodified _YGWRCTTNE_ 0 0 0 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 ENSG00000137720|ENST00000260276|CFAP68 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2405395507812 2 565.240198 1128.46584 0.53107 0.00030018 1.3468 0.00076124 1.8778 0.0010614 565.2400637673278 57.859 0.45359 57.369 57.186 57.639 -0.48974 79 21 5 0 0 0 0.48152 1 31399 31399 8.5933 0.68312 1 23212000 77614 4961 51908 53016 90301 90301 -0.09325138853364479 YGYFKALHIL 10 Unmodified _YGYFKALHIL_ 0 0 0 REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L MSMS AL20221201_MKP_PDAC_01 4 612.8448486328125 2 612.842416 1223.67028 NaN NaN NaN NaN NaN NaN NaN 102.29 1 96.115 95.615 96.615 -6.1757 0 0 0 0.71851 1 68647 68647 15.847 1.2655 1 + 77615 21936 51909 53017 90302 90302 0.06739168299463927 YGYLRCLP 8 Unmodified _YGYLRCLP_ 0 0 0 REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B REV__nc|ENSG00000138400|Q5I0G3-2|MDH1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.7509460449219 2 492.752213 983.489873 0.8896 0.00043835 -2.1134 -0.0010414 -1.2238 -0.00060303 492.75094548002653 54.823 0.19483 48.958 48.864 49.058 -5.8653 17 11 2 0 0 0 0.6895 1 34806 34806 18.135 2.3668 1 11249000 + 77616 20331 51910 53018 90303 90303 -0.0025325362902322013 YGYNQRSW 8 Unmodified _YGYNQRSW_ 0 0 0 REV__nc|ENSG00000157388|Q01668-3|CACNA1D REV__nc|ENSG00000157388|Q01668-3|CACNA1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.2411499023438 2 537.243598 1072.47264 0.88026 0.00047291 -0.6448 -0.00034641 0.23546 0.0001265 537.2428485554774 47.187 0.31326 42.107 42.053 42.366 -5.0805 49 20 3 0 0 0 0.74163 1 29314 29314 13.508 0.97634 1 23420000 + 77617 21379 51911 53019 90304 90304 -0.060694579104847435 YGYRQSVTY 9 Unmodified _YGYRQSVTY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;ENST00000465534.5_1_1:207500166-207510288:+|nuORF nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.771484375 2 568.772188 1135.52982 -0.46174 -0.00026262 0.8072 0.00045911 0.34547 0.00019649 568.7725941565446 30.532 0.24712 30.532 30.402 30.65 0 28 11 3 0 0 0 0.010301 1 15842 15842 79.596 50.515 1 9639400 77618 53 51912 53020 90305 90305 -0.03252035424748101 YGYRQSVTY 9 Unmodified _YGYRQSVTY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;ENST00000465534.5_1_1:207500166-207510288:+|nuORF nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7706298828125 2 568.772188 1135.52982 0.6954 0.00039552 -1.5129 -0.00086049 -0.81748 -0.00046496 568.7716479780601 30.538 0.21257 30.436 30.311 30.523 -0.10269 25 7 4 0 0 0 0.025842 1 15845 15845 57.722 30.093 1 3841700 77619 53 51912 53020 90306 90306 -0.03252035424748101 YGYRQSVTY 9 Unmodified _YGYRQSVTY_ 0 0 0 nc|ENSG00000196352|P08174-4|CD55;ENSG00000196352|ENST00000367064|CD55;nc|ENSG00000196352|P08174-3|CD55;ENST00000488171.5_1_1:207495110-207510876:+|nuORF;nc|ENSG00000196352|P08174-5|CD55;nc|ENSG00000196352|P08174-2|CD55;CD55-C4BPA|2|fusion;nc|ENSG00000196352|P08174-6|CD55;nc|ENSG00000196352|P08174-7|CD55;ENST00000465534.5_1_1:207500166-207510288:+|nuORF nc|ENSG00000196352|P08174-4|CD55 nc|ENSG00000196352|P08174-4|CD55 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.77197265625 2 568.772188 1135.52982 1.0337 0.00058796 -0.44877 -0.00025525 0.58496 0.00033271 568.7717676075522 34.73 0.58539 30.635 30.473 31.058 -4.0951 70 34 3 0 0 0 0.0086209 2 20009 20009;20137 89.401 57.095 1 27285000 77620 53 51912 53020 90307;90308 90307 -0.03252035424748101 YHACEQMFQ 9 Unmodified _YHACEQMFQ_ 0 0 0 REV__ENSG00000073910|ENST00000542859|FRY REV__ENSG00000073910|ENST00000542859|FRY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1562805175781 3 386.156526 1155.44775 0.28862 0.00011145 -1.3998 -0.00054055 -1.1112 -0.0004291 386.15610776717284 59.7 0.45882 59.7 59.443 59.902 0 56 20 4 0 0 0 0.55144 1 33281 33281 2.4985 0.41248 1 12877000 + 77621 17544 51913 53021 90309 90309 -0.12375597099708102 YHANFVECTF 10 Unmodified _YHANFVECTF_ 0 0 0 REV__nc|ENSG00000128610|A0PJY2-3|FEZF1 REV__nc|ENSG00000128610|A0PJY2-3|FEZF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1790466308594 3 410.846458 1229.51754 -0.56921 -0.00023386 -3.4312 -0.0014097 -4.0004 -0.0016436 411.1792192347369 26.177 0.31702 26.177 25.986 26.303 0 37 17 3 0 0 0 0.6606 1 13443 13443 6.6304 1.5829 1 5328300 + 77622 29627 51914 53022 90310 90310 -0.0880339515945252 YHCKDCNI 8 Unmodified _YHCKDCNI_ 0 0 0 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.2081298828125 2 498.207312 994.400072 0.59943 0.00029864 -0.85584 -0.00042639 -0.25642 -0.00012775 498.2067954009904 64.304 0.2741 63.819 63.675 63.949 -0.48512 21 12 2 0 0 0 0.80975 1 35071 35071 0.79363 0 1 1203400 77623 9033 51915 53023 90311 90311 -0.09735251299923675 YHCSYIGTDSY 11 Unmodified _YHCSYIGTDSY_ 0 0 0 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 436.8448791503906 3 436.844894 1307.51285 -0.23067 -0.00010077 0.30205 0.00013195 0.071381 3.1182E-05 436.84512527791696 24.488 0.22366 24.488 24.348 24.572 0 27 10 3 0 0 0 0.72952 1 12506 12506 0.50596 0.051438 1 2717800 + 77624 20878 51916 53024 90312 90312 -0.12860324092866904 YHDASYNRDDF 11 Unmodified _YHDASYNRDDF_ 0 0 0 REV__ENSG00000072364|ENST00000265343|AFF4 REV__ENSG00000072364|ENST00000265343|AFF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.1928405761719 3 468.193462 1401.55856 0.49171 0.00023022 -2.0012 -0.00093694 -1.5095 -0.00070673 468.19233845937396 71.658 0.24654 71.181 71.047 71.293 -0.47609 17 9 2 0 0 0 0.72952 1 39210 39210 0.50596 0 1 1181400 + 77625 17515 51917 53025 90313 90313 -0.12615962586301066 YHDIFSRL 8 Unmodified _YHDIFSRL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.771240234375 2 525.771991 1049.52943 0.19201 0.00010095 -0.26227 -0.00013789 -0.070258 -3.694E-05 525.7715988459667 56.602 0.18109 56.534 56.438 56.619 -0.068741 15 8 2 0 0 0 0.071044 1 30787 30787 128.37 53.943 1 4845100 77626 721 51918 53026 90314 90314 0.006645896460440781 YHDLHRSDL 9 Unmodified _YHDLHRSDL_ 0 0 0 REV__ENST00000472787.1_1_1:65831798-65845285:+|nuORF REV__ENST00000472787.1_1_1:65831798-65845285:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 385.8579711914062 3 385.856233 1154.54687 NaN NaN NaN NaN NaN NaN NaN 39.385 1 34.934 34.434 35.434 -4.4509 0 0 0 0.57317 1 23370 23370 8.7454 0 1 + 77627 19054 51919 53027 90315 90315 -0.024221148189326414 YHDRGKRIIVI 11 Unmodified _YHDRGKRIIVI_ 0 0 0 REV__nc|ENSG00000060656|Q92729|PTPRU REV__nc|ENSG00000060656|Q92729|PTPRU MSMS AL20221201_MKP_PDAC_01 4 457.2743225097656 3 457.273611 1368.799 NaN NaN NaN NaN NaN NaN NaN 105.87 1 99.697 99.197 100.2 -6.1757 0 0 0 0.94148 1 70906 70906 1.4551 0.94916 1 + 77628 29497 51920 53028 90316 90316 0.12935523262422066 YHDRVPDL 8 Unmodified _YHDRVPDL_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7543029785156 2 507.753798 1013.49304 NaN NaN NaN NaN NaN NaN NaN 17.817 1 17.831 17.331 18.331 0.013865 0 0 0 0.95201 1 8889 8889 10.183 1.5901 1 77629 7963 51921 53029 90317 90317 -0.013162872506768508 YHECGADD 8 Unmodified _YHECGADD_ 0 0 0 nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1 nc|ENSG00000167525|Q8NCQ7-2|PROCA1 nc|ENSG00000167525|Q8NCQ7-2|PROCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 455.1558227539062 2 455.1558 908.297046 NaN NaN NaN NaN NaN NaN NaN 37.655 1 37.672 37.172 38.172 0.01704 0 0 0 0.97444 1 19999 19999 0.79363 0 1 77630 7623 51922 53030 90318 90318 -0.16077040486879923 YHERATALSSR 11 Unmodified _YHERATALSSR_ 0 0 0 REV__ENST00000514900.5_1_3:129122974-129137267:-|nuORF REV__ENST00000514900.5_1_3:129122974-129137267:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8886413574219 3 430.889825 1289.64765 NaN NaN NaN NaN NaN NaN NaN 14.668 1 14.675 14.175 15.175 0.0071077 0 0 0 0.94293 1 7282 7282 0.40827 0.26837 1 + 77631 22673 51923 53031 90319 90319 0.014409171638817497 YHFFCDDGCCI 11 Unmodified _YHFFCDDGCCI_ 0 0 0 ENSG00000120256|ENST00000239367|LRP11 ENSG00000120256|ENST00000239367|LRP11 ENSG00000120256|ENST00000239367|LRP11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.492919921875 3 441.49281 1321.4566 -0.34174 -0.00015087 -0.072405 -3.1966E-05 -0.41414 -0.00018284 441.4926156883844 33.796 0.31434 33.796 33.633 33.947 0 40 15 3 0 0 0 0.71503 1 17834 17834 2.8433 2.2165 1 4669000 77632 3503 51924 53032 90320 90320 -0.1912699152553614 YHFIFLFI 8 Unmodified _YHFIFLFI_ 0 0 0 REV__ENSG00000196329|ENST00000358647|GIMAP5 REV__ENSG00000196329|ENST00000358647|GIMAP5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3031005859375 2 550.302396 1098.59024 1.0934 0.00060172 -1.1628 -0.00063989 -0.069359 -3.8169E-05 550.3017794049864 86.689 1.5152 80.513 79.87 81.385 -6.1757 137 82 2 0 0 0 0.76859 1 57401 57401 11.114 0 1 20333000 + 77633 23816 51925 53033 90321 90321 0.044887266962632566 YHFLWTIR 8 Unmodified _YHFLWTIR_ 0 0 0 REV__nc|ENSG00000293451|Q8IZJ6|TDH REV__nc|ENSG00000293451|Q8IZJ6|TDH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.233154296875 3 379.206426 1134.59745 1.3919 0.00052782 3.7183 0.00141 5.1102 0.0019378 379.20816015164183 30.346 0.19669 26.849 26.718 26.915 -3.497 13 9 3 0 0 0 8.7369 1 17078 17078 5.7319 0 1 4826100 + 77634 30042 51926 53034 90322 90322 0.035534592966769196 YHFNALTCE 9 Unmodified _YHFNALTCE_ 0 0 0 nc|ENSG00000143257|Q14994-15|NR1I3;nc|ENSG00000143257|Q14994-7|NR1I3;nc|ENSG00000143257|Q14994-3|NR1I3;nc|ENSG00000143257|Q14994-12|NR1I3;nc|ENSG00000143257|Q14994-13|NR1I3;ENSG00000143257|ENST00000367983|NR1I3;nc|ENSG00000143257|Q14994|NR1I3;nc|ENSG00000143257|Q14994-8|NR1I3 nc|ENSG00000143257|Q14994-15|NR1I3 nc|ENSG00000143257|Q14994-15|NR1I3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.793701171875 2 549.239667 1096.46478 0.58537 0.00032151 -0.13259 -7.2822E-05 0.45278 0.00024869 549.2393905613469 49.401 0.24001 49.008 48.8 49.04 -0.3923 19 11 2 0 0 0 0.19891 1 26495 26495 11.64 0 1 2188200 77635 5484 51927 53035 90323 90323 -0.07959353222281607 YHGCTSPF 8 Unmodified _YHGCTSPF_ 0 0 0 REV__nc|ENSG00000138802|O95487-2|SEC24B REV__nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20221201_MKP_PDAC_01 4 912.3651733398438 1 911.371614 910.364338 0.75452 0.00068765 -3.6158 -0.0032953 -2.8613 -0.0026077 911.3720766585822 71.639 0.062202 65.464 65.419 65.481 -6.1757 4 2 2 0 0 0 0.80044 1 46838 46838 6.3541 0 1 10075000 + 77636 20372 51928 53036 90324 90324 -0.09442965485266086 YHGIFGDATL 10 Unmodified _YHGIFGDATL_ 0 0 0 REV__ENSG00000163710|ENST00000295992|PCOLCE2 REV__ENSG00000163710|ENST00000295992|PCOLCE2 MSMS AL20221201_MKP_PDAC_01 4 547.2683715820312 2 547.269281 1092.52401 NaN NaN NaN NaN NaN NaN NaN 73.602 1 67.427 66.927 67.927 -6.1757 0 0 0 0.7417 1 48130 48130 14.838 0.93222 1 + 77637 21807 51929 53037 90325 90325 -0.018551339364194064 YHGSVCWGQL 10 Unmodified _YHGSVCWGQL_ 0 0 0 REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8430480957031 3 383.843048 1148.50731 0.29293 0.00011244 -0.20174 -7.7437E-05 0.091187 3.5002E-05 383.84299653505207 48.464 0.21557 48.421 48.32 48.536 -0.04369 22 10 3 0 0 0 0.66569 1 26153 26153 3.5871 0.59182 1 2607400 + 77638 26105 51930 53038 90326 90326 -0.0609995809402335 YHGSVCWGQL 10 Unmodified _YHGSVCWGQL_ 0 0 0 REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8435668945312 3 383.843048 1148.50731 1.6573 0.00063614 0.095392 3.6615E-05 1.7527 0.00067276 383.84311866360235 53.99 0.50606 48.125 47.912 48.419 -5.8653 90 29 4 0 0 0 0.67033 1 34099 34099 3.3196 0 1 168710000 + 77639 26105 51930 53038 90327 90327 -0.0609995809402335 YHGSVCWGQL 10 Unmodified _YHGSVCWGQL_ 0 0 0 REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF REV__ENST00000372134.5_1_10:85899260-85901341:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.8433837890625 3 383.843048 1148.50731 1.3368 0.00051312 -0.45554 -0.00017486 0.88126 0.00033827 383.84300379029025 69.086 1.7348 62.91 62.028 63.763 -6.1757 121 97 2 0 0 0 0.62068 1 45056 45056 5.7834 0.88642 1 39528000 + 77640 26105 51930 53038 90328 90328 -0.0609995809402335 YHHQEMQAL 9 Unmodified _YHHQEMQAL_ 0 0 0 nc|ENSG00000185684|Q6ZTU2-4|EP400P1;nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1 nc|ENSG00000185684|Q6ZTU2-4|EP400P1 nc|ENSG00000185684|Q6ZTU2-4|EP400P1 MSMS AL20221201_MKP_PDAC_01 4 578.7672729492188 2 578.76384 1155.51313 NaN NaN NaN NaN NaN NaN NaN 42.564 1 37.88 37.38 38.38 -4.6846 0 0 0 0.43505 1 25731 25731 18.135 3.2967 1 77641 16459 51931 53039 90329 90329 -0.05840859582349367 YHHYQQHYHHF 11 Unmodified _YHHYQQHYHHF_ 0 0 0 REV__ENSG00000130054|ENST00000252338|NALF2 REV__ENSG00000130054|ENST00000252338|NALF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 798.8475952148438 2 798.847616 1595.68068 NaN NaN NaN NaN NaN NaN NaN 100.74 1 100.69 100.19 101.19 -0.04216 0 0 0 0.94301 1 55963 55963 0.35063 0 1 + 77642 19695 51932 53040 90330 90330 -0.09333455993396456 YHIGSGYVF 9 Unmodified _YHIGSGYVF_ 0 0 0 ENSG00000168646|ENST00000307078|AXIN2;ENST00000577662.1_1_17:63534239-63554825:-|nuORF ENSG00000168646|ENST00000307078|AXIN2 ENSG00000168646|ENST00000307078|AXIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7529296875 2 521.753267 1041.49198 -0.37371 -0.00019499 -1.3236 -0.00069061 -1.6973 -0.00088559 521.7525314992849 55.94 0.22049 55.462 55.36 55.58 -0.47798 19 10 2 0 0 0 0.045537 1 30361 30361 46.921 25.174 1 4588500 77643 7786 51933 53041 90331 90331 -0.027105016195719145 YHIQQVGRF 9 Unmodified _YHIQQVGRF_ 0 0 0 ENST00000463752.1_1_16:24183527-24185902:+|nuORF;nc|ENSG00000166501|P05771|PRKCB;ENSG00000166501|ENST00000643927|PRKCB ENST00000463752.1_1_16:24183527-24185902:+|nuORF ENST00000463752.1_1_16:24183527-24185902:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.20556640625 3 383.205085 1146.59343 NaN NaN NaN NaN NaN NaN NaN 82.7 1 76.525 76.025 77.025 -6.1757 0 0 0 0.81961 1 54340 54340 5.2969 3.2109 1 77644 7500 51934 53042 90332 90332 0.025993698030106316 YHLASYLAF 9 Unmodified _YHLASYLAF_ 0 0 0 nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 nc|ENSG00000179869|Q86UQ4|ABCA13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.5379333496094 3 362.18692 1083.53893 0.0049385 1.7887E-06 -2.3814 -0.00086252 -2.3765 -0.00086073 362.1858543454022 38.137 0.25951 37.865 37.782 38.042 -0.27133 20 11 2 0 0 0 0.20883 1 20053 20053 8.1555 0.54658 1 1540300 77645 8860 51935 53043 90333 90333 0.0005035793155911961 YHLDVILNIY 10 Unmodified _YHLDVILNIY_ 0 0 0 ENST00000538035.5_3_6:24804838-24804988:-|nuORF ENST00000538035.5_3_6:24804838-24804988:-|nuORF ENST00000538035.5_3_6:24804838-24804988:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3536376953125 2 631.842613 1261.67067 -0.84525 -0.00053406 0.51709 0.00032672 -0.32816 -0.00020735 631.8423054738461 77.38 0.3616 76.897 76.721 77.082 -0.4826 22 17 2 0 0 0 0.23862 1 42334 42334 3.9444 0 1 1284900 77646 14999 51936 53044 90334 90334 0.05030543228667739 YHLERYPDSY 10 Unmodified _YHLERYPDSY_ 0 0 0 nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000439308.6_1_22:50656167-50658651:-|nuORF;ENST00000491449.5_1_22:50656167-50658502:-|nuORF;ENST00000498611.5_1_22:50657800-50659866:-|nuORF nc|ENSG00000128159|Q96RT7-2|TUBGCP6 nc|ENSG00000128159|Q96RT7-2|TUBGCP6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.8074340820312 2 671.806759 1341.59897 NaN NaN NaN NaN NaN NaN NaN 66.288 1 65.805 65.305 66.305 -0.48323 0 0 0 0.96981 1 36193 36193 3.9444 0 1 77647 4048 51937 53045 90335 90335 -0.058169961958356 YHLHHHPCDP 10 Unmodified _YHLHHHPCDP_ 0 0 0 ENST00000547015.5_2_12:56324985-56330219:+|nuORF ENST00000547015.5_2_12:56324985-56330219:+|nuORF ENST00000547015.5_2_12:56324985-56330219:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.7747802734375 2 628.274906 1254.53526 0.43927 0.00027599 -0.0050967 -3.2021E-06 0.43418 0.00027278 628.7756996610748 72.687 0.25526 72.211 72.063 72.318 -0.47588 14 11 2 0 0 0 0.65502 1 39766 39766 7.9102 0.62092 1 957590 77648 15115 51938 53046 90336 90336 -0.08182635113939796 YHLLKLFQS 9 Unmodified _YHLLKLFQS_ 0 0 0 ENSG00000127337|ENST00000247843|YEATS4 ENSG00000127337|ENST00000247843|YEATS4 ENSG00000127337|ENST00000247843|YEATS4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7842407226562 2 574.826766 1147.63898 0.25535 0.00014678 -0.26373 -0.0001516 -0.008379 -4.8165E-06 574.8246062060481 54.785 0.15793 54.319 54.242 54.4 -0.46664 14 7 3 0 0 0 0.21242 1 29697 29697 5.2307 0 1 4621800 77649 4000 51939 53047 90337 90337 0.07106595265372562 YHLLPGRRR 9 Unmodified _YHLLPGRRR_ 0 0 0 nc|ENSG00000112715|P15692-14|VEGFA;ENST00000476772.5_1_6:43738443-43746274:+|nuORF;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-18|VEGFA nc|ENSG00000112715|P15692-14|VEGFA nc|ENSG00000112715|P15692-14|VEGFA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.3458251953125 2 584.346523 1166.67849 NaN NaN NaN NaN NaN NaN NaN 102.2 1 102.15 101.65 102.65 -0.045853 0 0 0 0.85737 1 56767 56767 0.6015 0 1 77650 2914 51940 53048 90338 90338 0.10182160059480339 YHLQEFYHC 9 Unmodified _YHLQEFYHC_ 0 0 0 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 REV__nc|ENSG00000163939|Q86U86-5|PBRM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.4225158691406 3 413.846569 1238.51788 NaN NaN NaN NaN NaN NaN NaN 17.915 1 17.92 17.42 18.42 0.0050564 0 0 0 0.85852 1 9058 9058 0.20686 0.066965 1 + 77651 21838 51941 53049 90339 90339 -0.09183975439577807 YHLSQYCERC 10 Unmodified _YHLSQYCERC_ 0 0 0 REV__ENSG00000233056|ENST00000447535|ERVH48-1 REV__ENSG00000233056|ENST00000447535|ERVH48-1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.5192260742188 3 434.518235 1300.53288 1.3241 0.00057536 1.3683 0.00059454 2.6924 0.0011699 434.5190349246118 46.967 0.20226 46.933 46.814 47.016 -0.033417 31 9 4 0 0 0 0.69385 1 25274 25274 3.5871 1.1523 1 17054000 + 77652 24413 51942 53050 90340 90340 -0.10536851633901279 YHLSRCDWQ 9 Unmodified _YHLSRCDWQ_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.1819152832031 3 403.181952 1206.52403 0.086947 3.5056E-05 1.455 0.00058664 1.542 0.0006217 403.1823899437806 55.018 0.13937 54.949 54.898 55.038 -0.068737 11 6 2 0 0 0 0.55144 1 29909 29909 2.4985 1.2837 1 2449200 + 77653 20840 51943 53051 90341 90341 -0.07097457208078595 YHLSRCDWQ 9 Unmodified _YHLSRCDWQ_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 403.181952 1206.52403 0.41758 0.00016836 2.5881 0.0010435 3.0057 0.0012118 403.5177751086821 55.385 0.15285 54.907 54.774 54.926 -0.47798 -0.020961 0.00083309 NaN 2.4985 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 749450 + 77654 20840 51943 53051 -0.07097457208078595 YHLSRCDWQ 9 Unmodified _YHLSRCDWQ_ 0 0 0 REV__ENSG00000146530|ENST00000275358|VWDE REV__ENSG00000146530|ENST00000275358|VWDE MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 403.181952 1206.52403 0.086947 3.5056E-05 1.455 0.00058664 1.542 0.0006217 403.1823899437806 55.018 0.13937 54.949 54.898 55.038 -0.068737 0.020961 -0.00053744 NaN 2.4985 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2449200 + 77655 20840 51943 53051 -0.07097457208078595 YHLTRHLKT 9 Unmodified _YHLTRHLKT_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.8065795898438 2 584.832914 1167.65128 0.75233 0.00043999 0.13099 7.6607E-05 0.88332 0.00051659 584.8329676396811 78.783 0.33606 78.838 78.652 78.988 0.054977 28 12 3 0 0 0 0.19298 1 43465 43465 13.508 8.2772 1 4232300 77656 2747 51944 53052 90342 90342 0.07415631728395056 YHLTSVWMIF 10 Unmodified _YHLTSVWMIF_ 0 0 0 ENSG00000269433|ENST00000599405|OPN1MW3;ENSG00000268221|ENST00000595290|OPN1MW;ENSG00000166160|ENST00000369929|OPN1MW2;ENSG00000102076|ENST00000369951|OPN1LW ENSG00000269433|ENST00000599405|OPN1MW3 ENSG00000269433|ENST00000599405|OPN1MW3 MSMS AL20221201_MKP_PDAC_01 4 432.8865051269531 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 19.137 1 16.48 15.98 16.98 -2.6564 0 0 0 0.96756 1 10115 10115 4.1895 1.1943 1 77657 7441 51945 53053 90343 90343 0.0012721818509362492 YHLVSSTI 8 Unmodified _YHLVSSTI_ 0 0 0 REV__nc|ENSG00000144724|P23470-2|PTPRG REV__nc|ENSG00000144724|P23470-2|PTPRG MSMS AL20221201_MKP_PDAC_01 4 460.246826171875 2 460.247818 918.481082 NaN NaN NaN NaN NaN NaN NaN 19.18 1 16.524 16.024 17.024 -2.6564 0 0 0 0.63034 1 10139 10139 32.117 1.4804 1 + 77658 20730 51946 53054 90344 90344 0.018580960061626683 YHMRRKNE 8 Unmodified _YHMRRKNE_ 0 0 0 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 ENSG00000198799|ENST00000361127|LRIG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.5252685546875 3 378.525942 1132.556 -0.62112 -0.00023511 -0.97187 -0.00036788 -1.593 -0.00060299 378.52551566579183 14.857 0.26833 14.857 14.665 14.933 0 119 73 3 0 0 0 0.80799 1 7010 7010 1.8442 0.36234 1 1424500 77659 10156 51947 53055 90345 90345 -0.0049804473428594065 YHMWVFLDY 9 Unmodified _YHMWVFLDY_ 0 0 0 REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF REV__ENST00000526139.1_1_11:88911121-88933495:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.290283203125 2 637.289159 1272.56377 1.0465 0.0006669 -1.9105 -0.0012175 -0.864 -0.00055062 637.2892881822572 97.104 0.16479 90.928 90.827 90.992 -6.1757 11 9 2 0 0 0 0.37804 1 64356 64356 13.508 1.2672 1 10680000 + 77660 17613 51948 53056 90346 90346 -0.06161330257373265 YHNGAYYEPE 10 Unmodified _YHNGAYYEPE_ 0 0 0 nc|ENSG00000275395|Q9Y6R7|FCGBP;ENSG00000275395|ENST00000616721|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP nc|ENSG00000275395|Q9Y6R7|FCGBP MSMS AL20221201_MKP_PDAC_01 4 414.8402099609375 3 414.840249 1241.49892 NaN NaN NaN NaN NaN NaN NaN 0.76758 1 -1.7144 -2.2144 -1.2144 -2.482 0 0 0 1.0061 1 405 405 0 0 1 77661 16604 51949 53057 90347 90347 -0.11217233529691839 YHNLKNVI 8 Unmodified _YHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.782958984375 2 500.782359 999.550165 1.3577 0.00067994 0.076316 3.8218E-05 1.4341 0.00071815 500.78246991622933 37.426 0.27958 33.142 32.991 33.27 -4.2835 28 16 2 0 0 0 0.069468 1 21955 21955 123.1 61.739 1 8691800 77662 1135 51950 53058 90348 90348 0.050371800257153154 YHNLKNVI 8 Unmodified _YHNLKNVI_ 0 0 0 nc|ENSG00000074800|P06733-2|ENO1;ENST00000464920.1_1_1:8921421-8930582:-|nuORF;ENSG00000074800|ENST00000234590|ENO1 nc|ENSG00000074800|P06733-2|ENO1 nc|ENSG00000074800|P06733-2|ENO1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 500.782359 999.550165 0.02627 1.3155E-05 0.073387 3.6751E-05 0.099657 4.9906E-05 500.78242047766764 33.298 0.15838 33.327 33.253 33.411 0.028934 0.092249 -1.7645E-06 NaN 123.1 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 960840 77663 1135 51950 53058 0.050371800257153154 YHPFENMVAF 10 Unmodified _YHPFENMVAF_ 0 0 0 nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1;ENST00000531788.5_1_6:135639727-135754270:-|nuORF nc|ENSG00000135541|Q8N157-2|AHI1 nc|ENSG00000135541|Q8N157-2|AHI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7835083007812 2 627.784241 1253.55393 0.1824 0.00011451 -2.1074 -0.001323 -1.925 -0.0012085 627.7838046252244 56.703 0.42635 56.703 56.474 56.9 0 67 18 6 0 0 0 0.38092 2 31563 31462;31563 22.736 5.6234 1 11691000 77664 4720 51951 53059 90349;90350 90350 -0.06270518262749647 YHPGPHSA 8 Unmodified _YHPGPHSA_ 0 0 0 REV__ENSG00000132702|ENST00000255039|HAPLN2 REV__ENSG00000132702|ENST00000255039|HAPLN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8851318359375 2 433.201202 864.387851 0.4002 0.00017337 -1.4087 -0.00061025 -1.0085 -0.00043688 433.2005604049445 53.011 0.28398 53.011 52.836 53.12 0 19 13 2 0 0 0 8.7369 1 29289 29289 6.3541 1.5981 1 2588300 + 77665 19876 51952 53060 90351 90351 -0.04976783656434236 YHPHNTLTRGT 11 Unmodified _YHPHNTLTRGT_ 0 0 0 REV__ENSG00000178904|ENST00000392250|DPY19L3 REV__ENSG00000178904|ENST00000392250|DPY19L3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8851318359375 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 52.896 1 52.896 52.396 53.396 0 0 0 0 0.93923 1 29289 29289 3.0723 0.98626 1 + 77666 23071 51953 53061 90352 90352 0.0010893450944422511 YHPHQHHPHS 10 Unmodified _YHPHQHHPHS_ 0 0 0 nc|ENSG00000065970|Q9P0K8-2|FOXJ2;ENSG00000065970|ENST00000162391|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 nc|ENSG00000065970|Q9P0K8-2|FOXJ2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.7896118164062 2 638.78957 1275.56459 NaN NaN NaN NaN NaN NaN NaN 78.011 1 78.011 77.511 78.511 0 0 0 0 1.0061 1 43362 43362 0 0 1 77667 920 51954 53062 90353 90353 -0.06217354773434636 YHPNVDKL 8 Unmodified _YHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.2598876953125 2 493.258717 984.50288 -0.55863 -0.00027555 -1.1392 -0.00056192 -1.6978 -0.00083747 493.2580438955568 34.063 0.18568 34.063 33.97 34.156 0 13 9 2 0 0 0 0.18544 1 17909 17909 75.761 37.61 1 3714200 77668 16605 51955 53063 90354 90354 0.010009007547182591 YHPNVDKL 8 Unmodified _YHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2589416503906 2 493.258717 984.50288 -0.072706 -3.5863E-05 -0.0036982 -1.8242E-06 -0.076404 -3.7687E-05 493.2586851004958 34.283 0.25758 34.092 33.917 34.174 -0.19131 21 9 3 0 0 0 0.22167 1 17873 17873 66.457 34.151 1 3716200 77669 16605 51955 53063 90355 90355 0.010009007547182591 YHPNVDKL 8 Unmodified _YHPNVDKL_ 0 0 0 nc|ENSG00000276380|Q5JXB2|UBE2NL;ENSG00000177889|ENST00000318066|UBE2N nc|ENSG00000276380|Q5JXB2|UBE2NL nc|ENSG00000276380|Q5JXB2|UBE2NL MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.2575378417969 2 493.258717 984.50288 0.37837 0.00018663 -1.4092 -0.00069512 -1.0309 -0.00050848 493.2574745619236 38.529 0.38374 34.16 33.996 34.379 -4.3689 49 24 3 0 0 0 0.22167 1 22808 22808 66.457 34.151 1 31710000 77670 16605 51955 53063 90356 90356 0.010009007547182591 YHPRKQVPCS 10 Unmodified _YHPRKQVPCS_ 0 0 0 REV__ENST00000265801.6_2_8:20104216-20104552:-|nuORF REV__ENST00000265801.6_2_8:20104216-20104552:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.5419921875 3 405.54148 1213.60261 NaN NaN NaN NaN NaN NaN NaN 14.811 1 12.284 11.784 12.784 -2.5273 0 0 0 0.99091 1 7548 7548 0.69767 0 1 + 77671 25095 51956 53064 90357 90357 0.004353950970198639 YHQAQYGYL 9 Unmodified _YHQAQYGYL_ 0 0 0 REV__ENSG00000157150|ENST00000287814|TIMP4 REV__ENSG00000157150|ENST00000287814|TIMP4 MSMS AL20221201_MKP_PDAC_01 4 381.5142211914062 3 381.513696 1141.51926 NaN NaN NaN NaN NaN NaN NaN 15.301 1 12.774 12.274 13.274 -2.5273 0 0 0 0.82396 1 7838 7838 2.7352 0 1 + 77672 21367 51957 53065 90358 90358 -0.045840180791856255 YHQLEAFY 8 Unmodified _YHQLEAFY_ 0 0 0 ENSG00000144724|ENST00000474889|PTPRG;nc|ENSG00000144724|P23470-2|PTPRG ENSG00000144724|ENST00000474889|PTPRG ENSG00000144724|ENST00000474889|PTPRG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7510375976562 2 535.750724 1069.4869 -0.41784 -0.00022386 1.0772 0.00057711 0.65935 0.00035325 535.7507043280972 34.001 0.28283 34.001 33.841 34.123 0 20 13 2 0 0 0 0.75262 1 17844 17844 12.532 0 1 15423000 77673 5637 51958 53066 90359 90359 -0.04506805482196796 YHQLLCVHA 9 Unmodified _YHQLLCVHA_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|109|3|sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|109|3|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2747192382812 2 542.273844 1082.53313 0.22447 0.00012172 -0.52513 -0.00028477 -0.30066 -0.00016304 542.2735554183953 92.348 0.31969 92.348 92.163 92.482 0 54 24 3 0 0 0 0.59218 1 51002 51002 1.8442 0.19162 1 2764500 + 77674 29437 51959 53067 90360 90360 -0.004830638517432817 YHRAITVF 8 Unmodified _YHRAITVF_ 0 0 0 REV__ENSG00000183690|ENST00000420999|EFHC2 REV__ENSG00000183690|ENST00000420999|EFHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1006.546203613281 1 1006.54688 1005.5396 -0.13681 -0.00013771 -1.283 -0.0012914 -1.4198 -0.0014291 1006.5455542331879 81.363 0.26355 81.363 81.176 81.439 0 23 11 3 0 0 0 0.76266 1 45103 45103 11.64 0.81637 1 549260 + 77675 23366 51960 53068 90361 90361 0.03705197371277791 YHRCHEAF 8 Unmodified _YHRCHEAF_ 0 0 0 REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF REV__ENST00000492476.1_1_1:6271125-6272816:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.732177734375 2 531.732343 1061.45013 0.54443 0.00028949 0.34135 0.00018151 0.88578 0.000471 531.7323919200588 47.669 0.32822 47.63 47.455 47.783 -0.038643 51 15 4 0 0 0 0.80624 1 25648 25648 2.8892 0 1 51275000 + 77676 21423 51961 53069 90362 90362 -0.07813380579773366 YHRIFIMLLL 10 Unmodified _YHRIFIMLLL_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 440.2411804199219 3 440.261655 1317.76313 0.36648 0.00016135 0.91917 0.00040468 1.2857 0.00056602 440.26209367312373 19.68 0.14666 19.688 19.61 19.756 0.0078487 13 6 3 0 0 0 0.24005 1 10000 10000 0.77653 0 1 836380 77677 3829 51962 53070 90363 90363 0.11696349761177771 YHRRLHTL 8 Unmodified _YHRRLHTL_ 0 0 0 nc|ENSG00000198482|Q8N4W9-2|ZNF808;ENSG00000198482|ENST00000359798|ZNF808 nc|ENSG00000198482|Q8N4W9-2|ZNF808 nc|ENSG00000198482|Q8N4W9-2|ZNF808 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.3142700195312 2 548.312149 1094.60975 0.54884 0.00030093 2.2102 0.0012119 2.7591 0.0015128 548.3134825357602 63.396 0.29867 63.374 63.201 63.5 -0.021614 30 14 3 0 0 0 0.42423 1 34688 34688 42.095 5.9675 1 5658800 77678 10094 51963 53071 90364 90364 0.0662249575975693 YHSHHPTL 8 Unmodified _YHSHHPTL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1;ENST00000487986.1_1_3:193332581-193346300:+|nuORF nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2414245605469 2 496.240858 990.467164 NaN NaN NaN NaN NaN NaN NaN 17.172 1 17.173 16.673 17.673 0.0010548 0 0 0 0.97444 1 8520 8520 5.2307 1.2863 1 77679 10167 51964 53072 90365 90365 -0.028451367022967133 YHSHQFRN 8 Unmodified _YHSHQFRN_ 0 0 0 ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF ENST00000414608.1_1_7:65238610-65238703:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7546997070312 2 544.754664 1087.49478 NaN NaN NaN NaN NaN NaN NaN 0.26799 1 0.26799 -0.23201 0.76799 0 0 0 0 0.97444 1 133 133 0 0 1 77680 13014 51965 53073 90366 90366 -0.04547233442053766 YHTAHKTAF 9 Unmodified _YHTAHKTAF_ 0 0 0 ENST00000370651.5_1_6:64292160-64292229:+|nuORF ENST00000370651.5_1_6:64292160-64292229:+|nuORF ENST00000370651.5_1_6:64292160-64292229:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1824645996094 3 359.182169 1074.52468 1.8779 0.00067449 -0.61604 -0.00022127 1.2618 0.00045322 359.18168665243996 33.518 0.40648 29.533 29.487 29.894 -3.9853 35 22 2 0 0 0 0.46577 1 19384 19384 5.7319 0.43497 1 15871000 77681 12341 51966 53074 90367 90367 -0.009602944967127769 YHTESLQN 8 Unmodified _YHTESLQN_ 0 0 0 ENSG00000186834|ENST00000332499|HEXIM1 ENSG00000186834|ENST00000332499|HEXIM1 ENSG00000186834|ENST00000332499|HEXIM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.8927917480469 2 496.227613 990.440674 NaN NaN NaN NaN NaN NaN NaN 14.716 1 14.716 14.216 15.216 0 0 0 0 0.97444 1 7020 7020 0.79363 0 1 77682 9510 51967 53075 90368 90368 -0.05492870384273374 YHTESLQN 8 Unmodified _YHTESLQN_ 0 0 0 ENSG00000186834|ENST00000332499|HEXIM1 ENSG00000186834|ENST00000332499|HEXIM1 ENSG00000186834|ENST00000332499|HEXIM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.562744140625 2 496.227613 990.440674 NaN NaN NaN NaN NaN NaN NaN 14.719 1 14.719 14.219 15.219 0 0 0 0 0.97444 1 7022 7022 0.79363 0 1 77683 9510 51967 53075 90369 90369 -0.05492870384273374 YHVAAVFK 8 Unmodified _YHVAAVFK_ 0 0 0 REV__ENSG00000184292|ENST00000371225|TACSTD2 REV__ENSG00000184292|ENST00000371225|TACSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.2742919921875 2 467.760895 933.507237 0.02165 1.0127E-05 -1.4533 -0.00067982 -1.4317 -0.00066969 467.76000092355974 70.08 0.44118 69.601 69.472 69.914 -0.47903 38 23 2 0 0 0 0.80143 1 38460 38460 5.7604 0 1 3504200 + 77684 23409 51968 53076 90370 90370 0.03782409968277989 YHVFMGGPSH 10 Unmodified _YHVFMGGPSH_ 0 0 0 REV__ENST00000578411.1_1_17:28120861-28257182:-|nuORF REV__ENST00000578411.1_1_17:28120861-28257182:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2556762695312 2 566.255651 1130.49675 NaN NaN NaN NaN NaN NaN NaN 1.2174 1 1.2174 0.71742 1.7174 0 0 0 0 1.0061 1 594 594 0 0 1 + 77685 29041 51969 53077 90371 90371 -0.06327940748428773 YHVHLHVL 8 Unmodified _YHVHLHVL_ 0 0 0 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 ENSG00000169567|ENST00000304043|HINT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 509.2850646972656 2 509.285069 1016.55558 0.50118 0.00025524 1.2327 0.00062779 1.7339 0.00088304 509.28512173173834 39.301 0.23174 39.312 39.196 39.427 0.011452 19 10 2 0 0 0 0.079329 1 20942 20942 108.76 82.417 1 1559500 77686 7885 51970 53078 90372 90372 0.04796903608166758 YHVQSHHLLL 10 Unmodified _YHVQSHHLLL_ 0 0 0 ENST00000373307.5_1_10:71164777-71168747:-|nuORF ENST00000373307.5_1_10:71164777-71168747:-|nuORF ENST00000373307.5_1_10:71164777-71168747:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.228515625 3 416.22789 1245.66184 1.0112 0.00042091 0.66194 0.00027552 1.6732 0.00069643 416.2279168422456 36.713 0.66956 32.43 32.127 32.796 -4.2835 83 41 3 0 0 0 0.70734 1 21317 21317 2.086 0 1 310160000 77687 12408 51971 53079 90373 90373 0.04883614382856649 YHWICWLL 8 Unmodified _YHWICWLL_ 0 0 0 nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 nc|ENSG00000198964|Q86VZ5-2|SGMS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.7861328125 2 567.28368 1132.55281 -0.46445 -0.00026347 0.92709 0.00052592 0.46264 0.00026245 567.284465457294 77.481 0.36311 76.998 76.803 77.166 -0.4826 25 17 2 0 0 0 0.70131 1 42386 42386 17.087 5.9721 1 1867000 77688 10216 51972 53080 90374 90374 -0.008166878410065692 YHYDHMSFH 9 Unmodified _YHYDHMSFH_ 0 0 0 ENSG00000187066|ENST00000530719|TMEM262 ENSG00000187066|ENST00000530719|TMEM262 ENSG00000187066|ENST00000530719|TMEM262 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.833984375 3 412.834552 1235.48183 -1.1838 -0.0004887 0.69568 0.0002872 -0.48809 -0.0002015 412.83494926276546 32.671 0.22507 32.671 32.546 32.772 0 27 11 3 0 0 0 0.58865 1 17065 17065 1.0715 0.3738 1 5110500 77689 9532 51973 53081 90375 90375 -0.12649432616444756 YHYFEEHQ 8 Unmodified _YHYFEEHQ_ 0 0 0 REV__TRAP1|p.R316H|1|0.14|ENSG00000126602|chr16:3674436-3674436|C/T|missense_variant REV__TRAP1|p.R316H|1|0.14|ENSG00000126602|chr16:3674436-3674436|C/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.74169921875 2 576.740888 1151.46722 1.1932 0.00068819 -0.7767 -0.00044795 0.41654 0.00024023 576.7405212818096 50.19 0.32152 44.651 44.502 44.824 -5.5391 30 20 2 0 0 0 0.80143 1 31465 31465 5.7604 1.816 1 14981000 + 77690 30125 51974 53082 90376 90376 -0.10245181492950906 YHYRLDWLMWF 11 Unmodified _YHYRLDWLMWF_ 0 0 0 ENST00000570168.1_1_16:919345-920044:-|nuORF;ENST00000569516.5_1_16:904534-921479:-|nuORF;nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1 ENST00000570168.1_1_16:919345-920044:-|nuORF ENST00000570168.1_1_16:919345-920044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.9271240234375 3 543.927223 1628.75984 -0.19646 -0.00010686 -0.4933 -0.00026832 -0.68976 -0.00037518 543.927192358143 69.309 0.43565 68.828 68.627 69.062 -0.48071 72 18 5 0 0 0 0.73992 2 37922 37826;37922 0.50596 0.41111 1 18724000 77691 2114 51975 53083 90377;90378 90378 -0.029389450834969466 YHYRLDWLMWF 11 Unmodified _YHYRLDWLMWF_ 0 0 0 ENST00000570168.1_1_16:919345-920044:-|nuORF;ENST00000569516.5_1_16:904534-921479:-|nuORF;nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1 ENST00000570168.1_1_16:919345-920044:-|nuORF ENST00000570168.1_1_16:919345-920044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 815.3882446289062 2 815.387197 1628.75984 -0.38469 -0.00031367 -0.13841 -0.00011286 -0.52311 -0.00042653 815.387334895229 69.325 0.32116 68.845 68.675 68.996 -0.4803 40 13 4 0 0 0 0.74429 2 37867 37867;37973 0.35063 0.35063 1 4255700 77692 2114 51975 53083 90379;90380 90379 -0.029389450834969466 YHYRLDWLMWF 11 Unmodified _YHYRLDWLMWF_ 0 0 0 ENST00000570168.1_1_16:919345-920044:-|nuORF;ENST00000569516.5_1_16:904534-921479:-|nuORF;nc|ENSG00000103227|Q96S06-2|LMF1;ENSG00000103227|ENST00000262301|LMF1 ENST00000570168.1_1_16:919345-920044:-|nuORF ENST00000570168.1_1_16:919345-920044:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 815.3868408203125 2 815.387197 1628.75984 0.84422 0.00068837 -1.0703 -0.00087274 -0.22611 -0.00018437 815.38611328112 68.771 0.20049 68.796 68.701 68.902 0.025146 14 8 2 0 0 0 0.7453 1 37842 37842 0 0 1 1946500 77693 2114 51975 53083 90381 90381 -0.029389450834969466 YHYSASDLRYN 11 Unmodified _YHYSASDLRYN_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000595529.1_1_19:41112383-41114583:+|nuORF ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.545166015625 3 463.545836 1387.61568 -0.033618 -1.5584E-05 -0.92351 -0.00042809 -0.95712 -0.00044367 463.8796171243369 16.969 0.1951 16.969 16.882 17.077 0 106 55 2 0 0 0 0.73237 1 8292 8292 1.2148 0.51716 1 3131000 77694 1543 51976 53084 90382 90382 -0.06262495309897531 YHYSASDLRYN 11 Unmodified _YHYSASDLRYN_ 0 0 0 ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000595529.1_1_19:41112383-41114583:+|nuORF ENSG00000090006|ENST00000396819|LTBP4 ENSG00000090006|ENST00000396819|LTBP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 463.545836 1387.61568 -0.033618 -1.5584E-05 -0.92351 -0.00042809 -0.95712 -0.00044367 463.8796171243369 16.969 0.1951 16.969 16.882 17.077 0 0 0 NaN 1.2148 106 55 2 NaN NaN NaN NaN 0 NaN NaN 0 3131000 77695 1543 51976 53084 -0.06262495309897531 YHYTEAEGTF 10 Unmodified _YHYTEAEGTF_ 0 0 0 ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 ENSG00000151445|ENST00000557658|VIPAS39 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.5070190429688 3 406.508499 1216.50367 NaN NaN NaN NaN NaN NaN NaN 19.912 1 19.912 19.412 20.412 0 0 0 0 0.99897 1 9990 9990 0.77653 0 1 77696 6113 51977 53085 90383 90383 -0.09592349386912247 YHYTLGSS 8 Unmodified _YHYTLGSS_ 0 0 0 nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU nc|ENSG00000060656|Q92729-4|PTPRU MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2127990722656 2 464.213975 926.413397 NaN NaN NaN NaN NaN NaN NaN 79.662 1 79.662 79.162 80.162 0 0 0 0 0.97444 1 44245 44245 2.8892 2.0956 1 77697 16036 51978 53086 90384 90384 -0.05275353924650972 YIAAISARF 9 Unmodified _YIAAISARF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2850036621094 2 506.284734 1010.55492 -0.17647 -8.9346E-05 -0.28509 -0.00014434 -0.46156 -0.00023368 506.2843868943557 55.789 0.2329 55.721 55.588 55.821 -0.068737 18 11 2 0 0 0 0.013041 1 30317 30317 71.922 22.253 1 4408200 77698 4931;2996;2524 51979 53087 90385 90385 0.05006064168469493 YIAFRTLSY 9 Unmodified _YIAFRTLSY_ 0 0 0 REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF REV__ENST00000574129.5_1_17:79680521-79687104:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3036499023438 2 567.303124 1132.5917 0.62812 0.00035634 0.69492 0.00039423 1.323 0.00075056 567.3028846557753 59.019 0.49814 58.958 58.607 59.105 -0.060719 48 24 3 0 0 0 0.32871 1 32238 32238 15.847 0 1 12124000 + 77699 23315 51980 53088 90386 90386 0.03070315994386874 YIAGANCAHQL 11 Unmodified _YIAGANCAHQL_ 0 0 0 nc|ENSG00000179364|Q86VP3|PACS2;ENSG00000179364|ENST00000447393|PACS2;nc|ENSG00000179364|Q86VP3-4|PACS2;ENST00000551743.5_1_14:105849507-105861006:+|nuORF;ENST00000547903.1_1_14:105848293-105857603:+|nuORF nc|ENSG00000179364|Q86VP3|PACS2 nc|ENSG00000179364|Q86VP3|PACS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7803955078125 2 580.77949 1159.54443 NaN NaN NaN NaN NaN NaN NaN 87.045 1 86.542 86.042 87.042 -0.50318 0 0 0 0.91154 1 47621 47621 6.7232 1.4925 1 77700 8832 51981 53089 90387 90387 -0.02896286548275384 YIAMEYEKV 9 Unmodified _YIAMEYEKV_ 0 0 0 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 REV__nc|ENSG00000196208|Q4ZG55-4|GREB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1144.551513671875 1 1145.55472 1144.54745 1.0456 0.0011978 -1.2253 -0.0014037 -0.17976 -0.00020592 1145.5527863028885 100.36 0.15318 94.18 94.088 94.241 -6.1757 18 9 3 0 0 0 0.2001 1 67104 67104 23.148 0 1 58881000 + 77701 23804 51982 53090 90388 90388 -0.019044562141289134 YIAMLETDE 9 Unmodified _YIAMLETDE_ 0 0 0 REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF REV__ENST00000468355.5_1_20:4850526-4913271:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.775146484375 2 542.74699 1083.47943 0.24975 0.00013555 0.56909 0.00030887 0.81884 0.00044442 543.2482615634145 38.026 0.28296 38.026 37.846 38.129 0 38 13 4 0 0 0 0.19613 1 20217 20217 12.532 0 1 5056000 + 77702 17828 51983 53091 90389 90389 -0.058973258647938565 YICAKQQVW 9 Unmodified _YICAKQQVW_ 0 0 0 REV__ENSG00000135898|ENST00000650999|GPR55 REV__ENSG00000135898|ENST00000650999|GPR55 MSMS AL20221201_MKP_PDAC_01 4 380.1948852539062 3 380.19531 1137.5641 NaN NaN NaN NaN NaN NaN NaN 25.774 1 22.823 22.323 23.323 -2.9511 0 0 0 0.81228 1 14134 14134 5.7319 0 1 + 77703 20105 51984 53092 90390 90390 0.0008208946248942084 YICDVCCKGF 10 Unmodified _YICDVCCKGF_ 0 0 0 nc|ENSG00000159917|Q14590-2|ZNF235;ENSG00000159917|ENST00000291182|ZNF235 nc|ENSG00000159917|Q14590-2|ZNF235 nc|ENSG00000159917|Q14590-2|ZNF235 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.1623840332031 3 384.162513 1149.46571 0.14926 5.7342E-05 1.4658 0.00056309 1.615 0.00062043 384.16309030723653 42.217 0.25656 42.217 42.105 42.362 0 33 12 4 0 0 0 0.68719 1 22852 22852 2.086 0 1 6391900 77704 6679 51985 53093 90391 90391 -0.10304598169227575 YICEQLFSI 9 Unmodified _YICEQLFSI_ 0 0 0 ENSG00000174428|ENST00000472837|GTF2IRD2B;ENSG00000196275|ENST00000451013|GTF2IRD2;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2 ENSG00000174428|ENST00000472837|GTF2IRD2B ENSG00000174428|ENST00000472837|GTF2IRD2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.2750854492188 2 558.275718 1114.53688 NaN NaN NaN NaN NaN NaN NaN 48.048 1 48.048 47.548 48.548 0 0 0 0 0.50124 1 26338 26338 15.847 1.9411 1 77705 8418 51986 53094 90392 90392 -0.01580438868541023 YICFLGEVFN 10 Unmodified _YICFLGEVFN_ 0 0 0 REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|231|3|anti-sense REV__L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|231|3|anti-sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3119506835938 2 602.788992 1203.56343 2.8578 0.0017226 -1.622 -0.00097772 1.2358 0.00074491 602.7882788388015 99.746 0.13405 99.709 99.613 99.747 -0.036301 6 4 2 0 0 0 0.23745 1 55362 55362 5.7319 0.97584 1 1478900 + 77706 29442 51987 53095 90393 90393 -0.030207499771904622 YICIVEYEL 9 Unmodified _YICIVEYEL_ 0 0 0 REV__ENSG00000135114|ENST00000257570|OASL REV__ENSG00000135114|ENST00000257570|OASL MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7817993164062 2 572.783376 1143.5522 1.3178 0.00075481 -2.135 -0.0012229 -0.81724 -0.0004681 572.7825590719559 53.879 0.39291 48.075 47.786 48.179 -5.8042 58 24 3 0 0 0 0.30562 1 34147 34147 16.942 1.0951 1 47837000 + 77707 20039 51988 53096 90394 90394 -0.013835720713586852 YICLGCICSF 10 Unmodified _YICLGCICSF_ 0 0 0 REV__ENST00000394331.3_1_12:54423901-54424396:+|nuORF REV__ENST00000394331.3_1_12:54423901-54424396:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.28759765625 2 561.245049 1120.47554 0.63853 0.00035837 0.51689 0.0002901 1.1554 0.00064847 561.24560035626 55.55 0.24903 55.072 54.964 55.213 -0.47798 29 11 3 0 0 0 0.23566 1 30083 30083 7.2892 0.93513 1 2582000 + 77708 26443 51989 53097 90395 90395 -0.07987410163832465 YICLGCICSF 10 Unmodified _YICLGCICSF_ 0 0 0 REV__ENST00000394331.3_1_12:54423901-54424396:+|nuORF REV__ENST00000394331.3_1_12:54423901-54424396:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 561.245049 1120.47554 0.5081 0.00028517 -1.01 -0.00056688 -0.50193 -0.00028171 561.2454506577099 54.932 0.31271 54.932 54.741 55.054 0 -0.070041 -0.0010453 NaN 7.2892 44 13 4 NaN NaN NaN NaN 0 NaN NaN 0 26150000 + 77709 26443 51989 53097 -0.07987410163832465 YICSHCGESF 10 Unmodified _YICSHCGESF_ 0 0 0 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 ENSG00000102870|ENST00000262525|ZNF629 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.4864807128906 3 382.484532 1144.43177 -0.048148 -1.8416E-05 3.1667 0.0012112 3.1185 0.0011928 382.48625613045846 61.832 0.28925 61.832 61.707 61.996 0 23 12 3 0 0 0 0.68719 1 34492 34492 2.086 0 1 2398500 77710 2070 51990 53098 90396 90396 -0.13467303336619807 YICSKLYTTTI 11 Unmodified _YICSKLYTTTI_ 0 0 0 REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF REV__ENST00000541187.5_1_12:121659934-121666726:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 436.231689453125 3 435.896818 1304.66863 0.96439 0.00042038 -1.6726 -0.0007291 -0.70825 -0.00030872 435.8957354894794 35.148 0.32597 31.053 30.882 31.208 -4.0951 44 18 3 0 0 0 0.6607 1 20293 20293 7.9454 1.3219 1 21676000 + 77711 28592 51991 53099 90397 90397 0.028477464285515453 YIDDTLTMV 9 Oxidation (M) _YIDDTLTM(Oxidation (M))V_ YIDDTLTM(1)V YIDDTLTM(44)V 0 0 1 ENSG00000278311|ENST00000613102|GGNBP2;nc|ENSG00000278311|Q9H3C7-3|GGNBP2;nc|ENSG00000278311|Q9H3C7-2|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 ENSG00000278311|ENST00000613102|GGNBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7549438476562 2 543.754815 1085.49508 0.94078 0.00051155 -0.46052 -0.00025041 0.48026 0.00026114 543.7547038958378 54.58 0.41468 54.58 54.375 54.79 0 43 17 4 0 0 0 0.052168 1 30260 30260 44.407 21.259 1 8472200 77712 10933 51992 53100 90398 90398 1741 -0.04425039347756865 YIDFEMKI 8 Unmodified _YIDFEMKI_ 0 0 0 nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3 nc|ENSG00000075856|Q15020-4|SART3 nc|ENSG00000075856|Q15020-4|SART3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7984619140625 2 529.764986 1057.51542 0.4166 0.0002207 4.2125 0.0022317 4.6291 0.0024524 529.7674020155575 86.062 0.17683 85.559 85.444 85.621 -0.50318 11 6 2 0 0 0 8.7369 1 47060 47060 2.8892 0 1 168780 77713 1171 51993 53101 90399 90399 -0.011038238972560066 YIDKDCSAVYC 11 Unmodified _YIDKDCSAVYC_ 0 0 0 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 ENSG00000155761|ENST00000336338|SPAG17 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.7757568359375 2 640.270306 1278.52606 0.8474 0.00054257 -0.88703 -0.00056794 -0.03963 -2.5374E-05 640.2695572619323 92.231 0.96278 86.055 85.401 86.364 -6.1757 189 56 4 0 0 0 0.44182 1 60878 60878 19.362 0.10495 1 42252000 77714 6407 51994 53102 90400 90400 -0.10206209305124503 YIDKVRSL 8 Unmodified _YIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.2120666503906 2 497.290017 992.565481 0.284 0.00014123 -1.3551 -0.00067387 -1.0711 -0.00053264 497.2891426927143 37.227 0.13705 37.227 37.159 37.296 0 9 6 2 0 0 0 8.7369 1 19774 19774 29.082 2.7403 1 819830 77715 2962 51995 53103 90401 90401 0.06890046822900331 YIDKVRSL 8 Unmodified _YIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.290283203125 2 497.290017 992.565481 -0.11976 -5.9556E-05 0.91733 0.00045618 0.79757 0.00039662 497.29035498651183 37.577 0.19403 37.306 37.181 37.375 -0.27133 17 7 3 0 0 0 0.34916 1 19732 19732 49.933 11.959 1 2998600 77716 2962 51995 53103 90402 90402 0.06890046822900331 YIDKVRSL 8 Unmodified _YIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.290017 992.565481 -0.05189 -2.5804E-05 -1.1521 -0.00057293 -1.204 -0.00059874 497.28894317034775 37.214 0.13317 37.235 37.13 37.263 0.021545 -0.081767 -0.0012051 NaN 49.933 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 882410 77717 2962 51995 53103 0.06890046822900331 YIDKVRSL 8 Unmodified _YIDKVRSL_ 0 0 0 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 ENSG00000113368|ENST00000261366|LMNB1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 497.290017 992.565481 0.74707 0.00037151 -0.42677 -0.00021223 0.32029 0.00015928 497.2897111888945 42.185 0.39398 37.5 37.284 37.678 -4.6846 0.18304 -0.00048369 NaN 49.933 48 24 3 NaN NaN NaN NaN 0 NaN NaN 0 28543000 77718 2962 51995 53103 0.06890046822900331 YIDQTIVDPFS 11 Unmodified _YIDQTIVDPFS_ 0 0 0 SMC3|p.R15I|1|0.16|ENSG00000108055|chr10:110568966-110568966|G/T|missense_variant SMC3|p.R15I|1|0.16|ENSG00000108055|chr10:110568966-110568966|G/T|missense_variant SMC3|p.R15I|1|0.16|ENSG00000108055|chr10:110568966-110568966|G/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 649.3190307617188 2 649.319168 1296.62378 NaN NaN NaN NaN NaN NaN NaN 87.383 1 81.208 80.708 81.708 -6.1757 0 0 0 0.76159 1 57619 57619 13.906 0.86358 1 77719 30170 51996 53104 90403 90403 -0.012663611131301877 YIDRDNEARIV 11 Unmodified _YIDRDNEARIV_ 0 0 0 REV__ENSG00000181085|ENST00000338033|MAPK15 REV__ENSG00000181085|ENST00000338033|MAPK15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.3538208007812 2 682.351865 1362.68918 1.6296 0.001112 -2.8785 -0.0019642 -1.2489 -0.00085221 682.3498177661785 96.363 0.16626 90.187 90.104 90.27 -6.1757 15 9 3 0 0 0 0.37677 1 63836 63836 22.736 0 1 10844000 + 77720 23188 51997 53105 90404 90404 0.022340531325426127 YIDWPLETATH 11 Unmodified _YIDWPLETATH_ 0 0 0 REV__ENST00000511345.5_1_4:847097-847277:-|nuORF REV__ENST00000511345.5_1_4:847097-847277:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.3240356445312 2 673.324785 1344.63502 NaN NaN NaN NaN NaN NaN NaN 54.538 1 54.471 53.971 54.971 -0.066936 0 0 0 0.93224 1 29619 29619 5.7319 0.43497 1 + 77721 28157 51998 53106 90405 90405 -0.023515390189913887 YIEDYNQI 8 Unmodified _YIEDYNQI_ 0 0 0 nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF nc|ENSG00000114841|Q9P2D7-8|DNAH1 nc|ENSG00000114841|Q9P2D7-8|DNAH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1672668457031 3 353.166073 1056.47639 0.46419 0.00016394 1.1228 0.00039653 1.587 0.00056047 353.50038863759863 85.424 0.58309 84.923 84.715 85.298 -0.5015 137 47 3 0 0 0 0.5953 3 46689 46689;46795;46827 26.884 5.3467 1 10220000 77722 3067 51999 53107 90406;90407;90408 90406 -0.04958832927286494 YIEELQKF 8 Unmodified _YIEELQKF_ 0 0 0 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1;nc|ENSG00000116191|Q86X27-2|RALGPS2;ENST00000495034.5_1_1:178745899-178848128:+|nuORF;nc|ENSG00000116191|Q86X27-3|RALGPS2;ENSG00000116191|ENST00000367635|RALGPS2 nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000116191|Q86X27-2|RALGPS2 nc|ENSG00000116191|Q86X27-2|RALGPS2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2647705078125 2 535.281857 1068.54916 0.68831 0.00036844 3.3785 0.0018084 4.0668 0.0021769 535.7844862257347 60.199 0.14247 60.199 60.158 60.301 0 10 5 2 0 0 0 8.7369 1 33548 33548 12.532 2.3482 1 349300 77723 3203;4864 52000 53108 90409 90409 0.017629208661446683 YIEKNDKL 8 Unmodified _YIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7789916992188 2 511.779482 1021.54441 -0.28623 -0.00014649 -0.089015 -4.5556E-05 -0.37525 -0.00019204 511.77944927722166 26.075 0.21681 26.075 25.945 26.162 0 25 10 3 0 0 0 0.19235 1 13354 13354 72.968 16.791 1 7714600 77724 901 52001 53109 90410 90410 0.034500367233818 YIEKNDKL 8 Unmodified _YIEKNDKL_ 0 0 0 ENSG00000065361|ENST00000267101|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;nc|ENSG00000065361|P21860-3|ERBB3;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;ENST00000549472.1_1_12:56480319-56481575:+|nuORF ENSG00000065361|ENST00000267101|ERBB3 ENSG00000065361|ENST00000267101|ERBB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.7803955078125 2 511.779482 1021.54441 0.53107 0.00027179 -0.33087 -0.00016933 0.2002 0.00010246 511.77912582116437 29.146 0.1981 25.844 25.722 25.92 -3.3016 19 12 2 0 0 0 0.079701 1 16292 16292 106.94 21.668 1 46182000 77725 901 52001 53109 90411 90411 0.034500367233818 YIEKVHFL 8 Unmodified _YIEKVHFL_ 0 0 0 GFAP|p.R88H|1|0.23|ENSG00000131095|chr17:44915224-44915224|C/T|missense_variant GFAP|p.R88H|1|0.23|ENSG00000131095|chr17:44915224-44915224|C/T|missense_variant GFAP|p.R88H|1|0.23|ENSG00000131095|chr17:44915224-44915224|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 350.1982727050781 3 350.199049 1047.57532 -0.026833 -9.3968E-06 -1.0573 -0.00037027 -1.0841 -0.00037967 350.198563709671 38.315 0.16932 38.332 38.291 38.46 0.01704 12 7 2 0 0 0 0.80624 1 20427 20427 1.8442 0 1 1523600 77726 15901 52002 53110 90412 90412 0.05343234828296772 YIEMLLKAEL 10 Unmodified _YIEMLLKAEL_ 0 0 0 ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000464622.5_1_6:121401919-121436400:-|nuORF;ENST00000368464.7_1_6:121417353-121436400:-|nuORF ENSG00000146350|ENST00000398212|TBC1D32 ENSG00000146350|ENST00000398212|TBC1D32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.8443603515625 2 611.841225 1221.6679 0.43652 0.00026708 0.030048 1.8385E-05 0.46657 0.00028546 612.3426996831183 97.739 0.76758 97.496 97.123 97.89 -0.24277 99 34 3 0 0 0 0.72607 2 53221 53221;53442 0 0 1 91437000 77727 5772 52003 53111 90413;90414 90413 0.06592951779521172 YIENVINML 9 Unmodified _YIENVINML_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3;REV__nc|ENSG00000087116|O95450-2|ADAMTS2 REV__nc|ENSG00000087116|O95450-2|ADAMTS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7891845703125 2 554.788992 1107.56343 0.8603 0.00047729 -1.6136 -0.00089518 -0.75325 -0.0004179 554.7879498502632 84.206 0.31818 78.03 77.837 78.155 -6.1757 25 17 2 0 0 0 0.07916 1 55354 55354 37.974 3.5723 1 11027000 + 77728 21314;17778 52004 53112 90415 90415 0.013952500227787823 YIEPDLHML 9 Unmodified _YIEPDLHML_ 0 0 0 REV__ENSG00000167910|ENST00000301645|CYP7A1 REV__ENSG00000167910|ENST00000301645|CYP7A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.785888671875 2 565.781167 1129.54778 0.50477 0.00028559 -2.4151 -0.0013664 -1.9103 -0.0010808 565.780334038395 75.164 0.76622 75.21 75.004 75.771 0.045967 64 36 3 0 0 0 0.37804 1 41623 41623 13.508 0.97634 1 19973000 + 77729 22263 52005 53113 90416 90416 -0.011810364942903107 YIEPKKFY 8 Unmodified _YIEPKKFY_ 0 0 0 REV__nc|ENSG00000270379|A2RTY3-2|HEATR9 REV__nc|ENSG00000270379|A2RTY3-2|HEATR9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7908935546875 2 544.294768 1086.57498 0.55355 0.00030129 4.0405 0.0021992 4.594 0.0025005 544.2968787832492 36.838 0.38773 36.838 36.61 36.997 0 24 18 2 0 0 0 8.7369 1 19622 19622 11.114 0 1 1215800 + 77730 24626 52006 53114 90417 90417 0.03515815108426068 YIERMNYIHR 10 Unmodified _YIERMNYIHR_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENST00000471959.2_1_6:111995672-112015899:-|nuORF;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 697.8533935546875 2 697.853521 1393.69249 0.24584 0.00017156 -1.2453 -0.00086907 -0.99951 -0.00069751 697.8525621512666 72.89 0.30734 72.932 72.761 73.068 0.041725 36 14 3 0 0 0 0.48505 1 40127 40127 17.113 4.8722 1 5330300 77731 8566;427 52007 53115 90418 90418 0.011390247055715008 YIESSDSEEI 10 Unmodified _YIESSDSEEI_ 0 0 0 nc|ENSG00000071794|Q14527-2|HLTF;ENSG00000071794|ENST00000310053|HLTF nc|ENSG00000071794|Q14527-2|HLTF nc|ENSG00000071794|Q14527-2|HLTF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2537231445312 2 586.253691 1170.49283 NaN NaN NaN NaN NaN NaN NaN 94.701 1 94.701 94.201 95.201 0 0 0 0 1.0061 1 52347 52347 0 0 1 77732 1062 52008 53116 90419 90419 -0.08559796551821819 YIEVAQKM 8 Unmodified _YIEVAQKM_ 0 0 0 REV__ENSG00000105186|ENST00000306065|ANKRD27 REV__ENSG00000105186|ENST00000306065|ANKRD27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 491.2576599121094 2 491.257328 980.500103 1.9088 0.00093771 -0.19608 -9.6327E-05 1.7127 0.00084138 491.2571683857313 62.599 0.80752 56.423 56.156 56.964 -6.1757 66 41 2 0 0 0 0.63229 2 40286 40286;40552 23.148 1.4018 1 80697000 + 77733 18405 52009 53117 90420;90421 90420 0.009073093055462778 YIEYFWRIAWR 11 Unmodified _YIEYFWRIAWR_ 0 0 0 ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF ENST00000419746.5_1_2:179403628-179404009:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 801.9151611328125 2 801.914436 1601.81432 NaN NaN NaN NaN NaN NaN NaN 101.84 1 101.84 101.34 102.34 0 0 0 0 0.9435 1 56176 56176 0 0 1 77734 13093 52010 53118 90422 90422 0.037483900596043895 YIFAHSFAY 9 Unmodified _YIFAHSFAY_ 0 0 0 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 REV__nc|ENSG00000004846|Q2M3G0-1|ABCB5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1118.533569335938 1 1118.53056 1117.52328 4.2948 0.0048038 0.88984 0.00099531 5.1846 0.0057991 1118.5290873982206 98.574 0.1267 98.546 98.458 98.584 -0.028282 8 4 2 0 0 0 0.14602 1 54721 54721 28.487 0 1 2299100 + 77735 16953 52011 53119 90423 90423 -0.030779285854805494 YIFAKGCQRCE 11 Unmodified _YIFAKGCQRCE_ 0 0 0 REV__nc|ENSG00000189144|Q86YE8-2|ZNF573 REV__nc|ENSG00000189144|Q86YE8-2|ZNF573 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 659.309326171875 2 659.307558 1316.60056 0.24767 0.00016329 2.402 0.0015837 2.6497 0.001747 659.309530472759 51.548 0.19558 51.494 51.401 51.597 -0.053871 24 9 3 0 0 0 0.53952 1 27903 27903 14.405 3.6059 1 4121300 + 77736 23767 52012 53120 90424 90424 -0.04507401703108371 YIFESYYF 8 Unmodified _YIFESYYF_ 0 0 0 CON__Q2TBQ1 CON__Q2TBQ1 CON__Q2TBQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.839599609375 3 377.839298 1130.49606 0.72977 0.00027574 0.20915 7.9026E-05 0.93892 0.00035476 377.8393305012438 74.972 0.23434 74.495 74.348 74.582 -0.47714 17 9 2 0 0 0 0.80676 1 41062 41062 3.9444 1.8584 1 946520 + 77737 195 52013 53121 90425 90425 -0.06396456916536408 YIFESYYF 8 Unmodified _YIFESYYF_ 0 0 0 CON__Q2TBQ1 CON__Q2TBQ1 CON__Q2TBQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8400268554688 3 377.839298 1130.49606 0.61515 0.00023243 0.98708 0.00037296 1.6022 0.00060539 377.83958727716856 93.209 0.69687 87.034 86.754 87.451 -6.1757 65 48 2 0 0 0 0.77907 1 61894 61894 7.2892 0.56607 1 15591000 + 77738 195 52013 53121 90426 90426 -0.06396456916536408 YIFESYYF 8 Unmodified _YIFESYYF_ 0 0 0 CON__Q2TBQ1 CON__Q2TBQ1 CON__Q2TBQ1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 377.839298 1130.49606 0.28644 0.00010823 0.43372 0.00016388 0.72016 0.0002721 377.8392577262283 74.473 0.2394 74.473 74.365 74.604 0 -0.010946 7.7432E-05 NaN 3.9444 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 541870 + 77739 195 52013 53121 -0.06396456916536408 YIFHGAEVY 9 Unmodified _YIFHGAEVY_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.7664184570312 2 549.766374 1097.5182 0.3047 0.00016751 0.60202 0.00033097 0.90672 0.00049848 549.7671985399687 48.922 0.30524 48.55 48.388 48.693 -0.37171 28 14 3 0 0 0 0.045537 1 26278 26278 46.921 31.074 1 4037200 77740 16078 52014 53122 90427 90427 -0.026662324480867028 YIFHGAEVY 9 Unmodified _YIFHGAEVY_ 0 0 0 nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 nc|ENSG00000096717|Q96EB6-2|SIRT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.2689819335938 2 549.766374 1097.5182 0.834 0.00045851 3.1294 0.0017205 3.9634 0.002179 550.2692781650326 54.539 0.32617 48.674 48.437 48.763 -5.8653 28 20 2 0 0 0 0.027803 1 34631 34631 56.541 22.439 1 21712000 77741 16078 52014 53122 90428 90428 -0.026662324480867028 YIFHGFRG 8 Unmodified _YIFHGFRG_ 0 0 0 ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 ENSG00000137809|ENST00000315757|ITGA11 ENSG00000137809|ENST00000315757|ITGA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 996.92822265625 1 996.505012 995.497735 0.38502 0.00038367 0.78034 0.00077762 1.1654 0.0011613 996.5056002408567 86.07 0.28121 85.567 85.366 85.647 -0.50319 14 10 2 0 0 0 0.81107 1 47027 47027 0 0 1 331310 77742 4970 52015 53123 90429 90429 -0.00019358317229034583 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 406.8767395019531 3 406.876634 1217.60807 0.30761 0.00012516 0.67359 0.00027407 0.9812 0.00039923 406.8768423594546 38.52 0.2675 38.52 38.414 38.682 0 38 13 4 0 0 0 0.08907 1 20567 20567 35.612 9.5916 1 9856100 77743 5038 52016 53124 90430 90430 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.8115234375 2 609.811313 1217.60807 0.37838 0.00023074 0.74923 0.00045689 1.1276 0.00068763 609.811762104421 38.553 0.17939 38.553 38.44 38.62 0 14 8 2 0 0 0 0.18255 1 20617 20617 20.415 9.5906 1 1556100 77744 5038 52016 53124 90431 90431 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.8769836425781 3 406.876634 1217.60807 0.0082189 3.3441E-06 0.1453 5.9118E-05 0.15352 6.2462E-05 406.87665724794317 38.906 0.28744 38.619 38.475 38.763 -0.28687 42 12 4 0 0 0 0.13639 1 20470 20470 29.437 3.4165 1 45037000 77745 5038 52016 53124 90432 90432 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.8110961914062 2 609.811313 1217.60807 0.031561 1.9246E-05 0.5484 0.00033442 0.57997 0.00035367 609.8111633602908 38.906 0.22088 38.619 38.52 38.741 -0.28687 23 9 3 0 0 0 0.018061 1 20494 20494 53.833 21.047 1 5814000 77746 5038 52016 53124 90433 90433 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8768310546875 3 406.876634 1217.60807 -0.10675 -4.3432E-05 -0.61431 -0.00024995 -0.72106 -0.00029338 406.876450089015 38.515 0.22897 38.532 38.374 38.603 0.01704 22 10 3 0 0 0 0.047714 1 20463 20463 45.74 8.6652 1 5537300 77747 5038 52016 53124 90434 90434 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8765563964844 3 406.876634 1217.60807 0.8151 0.00033164 -0.17952 -7.3042E-05 0.63558 0.0002586 406.87660498701143 43.372 0.46897 38.607 38.405 38.874 -4.7648 82 31 3 0 0 0 0.13639 2 26387 26251;26387 29.437 11.363 1 100780000 77748 5038 52016 53124 90435;90436 90436 0.007973971604542385 YIFKERESF 9 Unmodified _YIFKERESF_ 0 0 0 ENSG00000138303|ENST00000672957|ASCC1;nc|ENSG00000138303|Q8N9N2|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 ENSG00000138303|ENST00000672957|ASCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 609.8128662109375 2 609.811313 1217.60807 0.56166 0.0003425 -0.66103 -0.00040311 -0.099378 -6.0602E-05 609.8112338893334 43.385 0.38066 38.62 38.462 38.843 -4.7648 44 25 2 0 0 0 0.044042 2 26439 26299;26439 57.249 31.85 1 27075000 77749 5038 52016 53124 90437;90438 90438 0.007973971604542385 YIFNIFYSS 9 Unmodified _YIFNIFYSS_ 0 0 0 REV__ENSG00000099219|ENST00000339450|ERMP1 REV__ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.2816772460938 2 577.281857 1152.54916 1.4021 0.00080941 -1.2187 -0.00070354 0.18339 0.00010587 577.2811278013594 81.238 0.56773 81.298 80.966 81.533 0.059929 54 21 3 0 0 0 0.51218 1 45045 45045 6.7232 0.51738 1 8512200 + 77750 17968 52017 53125 90439 90439 -0.021010791338540002 YIFSSHVHN 9 Unmodified _YIFSSHVHN_ 0 0 0 REV__nc|ENSG00000112175|P22003-2|BMP5 REV__nc|ENSG00000112175|P22003-2|BMP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.5139770507812 3 368.513807 1102.51959 NaN NaN NaN NaN NaN NaN NaN 16.912 1 16.912 16.412 17.412 0 0 0 0 0.85261 1 8291 8291 1.1933 0.79263 1 + 77751 18792 52018 53126 90440 90440 -0.027565983593149213 YIFVHLKI 8 Unmodified _YIFVHLKI_ 0 0 0 ENST00000434667.3_2_21:33074682-33076121:-|nuORF ENST00000434667.3_2_21:33074682-33076121:-|nuORF ENST00000434667.3_2_21:33074682-33076121:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.8176879882812 2 516.81567 1031.61679 3.8749 0.0020026 -0.153 -7.907E-05 3.7219 0.0019235 516.8155286986831 98.374 0.46945 98.345 98.089 98.559 -0.028282 21 13 2 0 0 0 0.80044 1 54637 54637 6.3541 0 1 1102400 77752 13303 52019 53127 90441 90441 0.10224415587617841 YIFVMAVNPIF 11 Unmodified _YIFVMAVNPIF_ 0 0 0 REV__ENSG00000237110|ENST00000434551|TAAR9 REV__ENSG00000237110|ENST00000434551|TAAR9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 656.8526611328125 2 657.35176 1312.68897 0.73898 0.00048577 3.3302 0.0021891 4.0691 0.0026749 657.3541607220074 59.888 0.16908 53.773 53.665 53.834 -6.1147 13 9 2 0 0 0 0.28752 1 38470 38470 13.906 0.86358 1 22424000 + 77753 24428 52020 53128 90442 90442 0.045129618790042514 YIGCYVMDDPD 11 Unmodified _YIGCYVMDDPD_ 0 0 0 REV__nc|ENSG00000162688|P35573-2|AGL REV__nc|ENSG00000162688|P35573-2|AGL MSMS AL20221201_MKP_PDAC_01 4 645.7543334960938 2 645.754489 1289.49443 NaN NaN NaN NaN NaN NaN NaN 99.949 1 93.773 93.273 94.273 -6.1757 0 0 0 0.92234 1 66723 66723 6.2058 0 1 + 77754 21678 52021 53129 90443 90443 -0.13874202059082563 YIGENLQLL 9 Unmodified _YIGENLQLL_ 0 0 0 ENSG00000132603|ENST00000254940|NIP7;nc|ENSG00000132603|Q9Y221-2|NIP7 ENSG00000132603|ENST00000254940|NIP7 ENSG00000132603|ENST00000254940|NIP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7955322265625 2 531.795132 1061.57571 NaN NaN NaN NaN NaN NaN NaN 82.572 1 82.076 81.576 82.576 -0.4952 0 0 0 0.7453 1 45203 45203 7.9102 0 1 77755 4426 52022 53130 90444 90444 0.04738609757487211 YIGIGLLIL 9 Unmodified _YIGIGLLIL_ 0 0 0 REV__ENSG00000188800|ENST00000372766|TMCO2 REV__ENSG00000188800|ENST00000372766|TMCO2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 974.6288452148438 1 974.628481 973.621205 -0.2894 -0.00028206 2.3483 0.0022887 2.0589 0.0020067 974.6298290629181 101.73 0.17615 101.68 101.52 101.7 -0.045853 6 5 2 0 0 0 0.085487 1 56499 56499 36.466 0 1 21967000 + 77756 17529 52023 53131 90445 90445 0.13333880010532084 YIGIGLLIL 9 Unmodified _YIGIGLLIL_ 0 0 0 REV__ENSG00000188800|ENST00000372766|TMCO2 REV__ENSG00000188800|ENST00000372766|TMCO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.8190002441406 2 487.817879 973.621205 0.89175 0.00043501 1.7006 0.00082957 2.5923 0.0012646 487.81858973483645 102.19 0.19529 96.016 95.877 96.072 -6.1757 21 8 4 0 0 0 0.047696 1 68601 68601 45.75 0 1 32176000 + 77757 17529 52023 53131 90446 90446 0.13333880010532084 YIGIGLLIL 9 Unmodified _YIGIGLLIL_ 0 0 0 REV__ENSG00000188800|ENST00000372766|TMCO2 REV__ENSG00000188800|ENST00000372766|TMCO2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 974.628481 973.621205 -0.2894 -0.00028206 2.3483 0.0022887 2.0589 0.0020067 974.6298290629181 101.73 0.17615 101.68 101.52 101.7 -0.045853 0 0 NaN 36.466 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 21967000 + 77758 17529 52023 53131 0.13333880010532084 YIGKLNMIL 9 Unmodified _YIGKLNMIL_ 0 0 0 ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF ENSG00000082898|ENST00000401558|XPO1 ENSG00000082898|ENST00000401558|XPO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8116455078125 2 532.81227 1063.60999 1.0408 0.00055455 -1.043 -0.0005557 -0.0021446 -1.1427E-06 532.8113729509641 71.274 0.35951 71.313 71.13 71.49 0.039024 51 15 4 0 0 0 0.28047 1 39309 39309 18.135 2.2878 1 15491000 77759 1354 52024 53132 90447 90447 0.08072734644724733 YIGNECGKAFR 11 Unmodified _YIGNECGKAFR_ 0 0 0 nc|ENSG00000197608|Q6ZN19-2|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841 nc|ENSG00000197608|Q6ZN19-2|ZNF841 nc|ENSG00000197608|Q6ZN19-2|ZNF841 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 419.8728942871094 3 419.873007 1256.59719 0.64805 0.0002721 -1.7741 -0.0007449 -1.1261 -0.0004728 419.8724300958961 30.223 0.14859 30.142 30.056 30.205 -0.080431 17 5 4 0 0 0 0.66428 1 15675 15675 3.8459 0 1 3945200 77760 9980 52025 53133 90448 90448 -0.020843284854890953 YIGQSRRLF 9 Unmodified _YIGQSRRLF_ 0 0 0 REV__ENSG00000243978|ENST00000520821|RTL9 REV__ENSG00000243978|ENST00000520821|RTL9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.3211059570312 2 570.31964 1138.62473 0.65931 0.00037602 2.3739 0.0013539 3.0332 0.0017299 570.3208251560555 73.11 0.14077 73.11 72.985 73.126 0 8 5 2 0 0 0 0.53666 1 40688 40688 5.2307 0 1 756200 + 77761 24480 52026 53134 90449 90449 0.06095942837077928 YIGTDGFWHF 10 Unmodified _YIGTDGFWHF_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.2827758789062 2 621.782556 1241.55056 0.5953 0.00037015 -1.1836 -0.00073596 -0.58833 -0.00036581 621.7820173535493 72.404 0.22794 71.927 71.813 72.041 -0.47609 18 10 2 0 0 0 0.5905 1 39619 39619 11.64 2.2572 1 1324200 + 77762 22858 52027 53135 90450 90450 -0.06055445045126362 YIGTDGFWHF 10 Unmodified _YIGTDGFWHF_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.7822875976562 2 621.782556 1241.55056 0.75731 0.00047088 -0.1923 -0.00011957 0.56501 0.00035131 621.7824701820703 71.857 0.64249 71.896 71.469 72.111 0.039024 52 30 3 0 0 0 0.5905 1 39525 39525 11.64 0 1 7389800 + 77763 22858 52027 53135 90451 90451 -0.06055445045126362 YIGTDGFWHF 10 Unmodified _YIGTDGFWHF_ 0 0 0 REV__nc|ENSG00000175267|A6NCI4-2|VWA3A REV__nc|ENSG00000175267|A6NCI4-2|VWA3A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 621.782556 1241.55056 0.5953 0.00037015 -1.1836 -0.00073596 -0.58833 -0.00036581 621.7820173535493 72.404 0.22794 71.927 71.813 72.041 -0.47609 0.015529 -0.00074525 NaN 11.64 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1324200 + 77764 22858 52027 53135 -0.06055445045126362 YIGYRVKMQ 9 Unmodified _YIGYRVKMQ_ 0 0 0 REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF REV__ENST00000542747.5_1_6:149997344-150023094:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 579.3123168945312 2 579.310426 1156.6063 NaN NaN NaN NaN NaN NaN NaN 76.355 1 70.18 69.68 70.68 -6.1757 0 0 0 0.33856 1 49945 49945 23.148 3.8914 1 + 77765 28624 52028 53136 90452 90452 0.03426064870882328 YIHFLNTF 8 Unmodified _YIHFLNTF_ 0 0 0 ENSG00000172725|ENST00000341356|CORO1B ENSG00000172725|ENST00000341356|CORO1B ENSG00000172725|ENST00000341356|CORO1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7695922851562 2 527.77146 1053.52837 NaN NaN NaN NaN NaN NaN NaN 43.638 1 43.622 43.122 44.122 -0.015667 0 0 0 0.97348 1 23390 23390 5.7604 0.028577 1 77766 8246 52029 53137 90453 90453 0.0037437527712427254 YIHHFDRI 8 Unmodified _YIHHFDRI_ 0 0 0 ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A ENSG00000172081|ENST00000357066|MOB3A MSMS AL20221201_MKP_PDAC_01 4 367.5260009765625 3 367.526047 1099.55631 NaN NaN NaN NaN NaN NaN NaN 36.527 1 32.244 31.744 32.744 -4.2835 0 0 0 0.91677 1 21338 21338 17.443 5.8023 1 77767 8182 52030 53138 90454 90454 0.010516982572426059 YIHKRALRP 9 Unmodified _YIHKRALRP_ 0 0 0 REV__ENSG00000174945|ENST00000683327|AMZ1 REV__ENSG00000174945|ENST00000683327|AMZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 385.2346801757812 3 385.236608 1152.688 NaN NaN NaN NaN NaN NaN NaN 29.03 1 29.03 28.53 29.53 0 0 0 0 0.86004 1 15021 15021 0.26902 0 1 + 77768 22828 52031 53139 90455 90455 0.11775928344968634 YIHKRALRP 9 Unmodified _YIHKRALRP_ 0 0 0 REV__ENSG00000174945|ENST00000683327|AMZ1 REV__ENSG00000174945|ENST00000683327|AMZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.2352294921875 3 385.236608 1152.688 NaN NaN NaN NaN NaN NaN NaN 16.778 1 16.783 16.283 17.283 0.0050564 0 0 0 0.86004 1 8428 8428 0.26902 0 1 + 77769 22828 52031 53139 90456 90456 0.11775928344968634 YIHKTLYF 8 Unmodified _YIHKTLYF_ 0 0 0 ENST00000367210.2_2_1:203771435-203771690:+|nuORF ENST00000367210.2_2_1:203771435-203771690:+|nuORF ENST00000367210.2_2_1:203771435-203771690:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7957763671875 2 542.794935 1083.57532 0.32435 0.00017605 2.959 0.0016061 3.2834 0.0017822 542.7960108283031 63.108 0.71481 63.087 62.525 63.24 -0.021614 57 36 2 0 0 0 0.61462 1 34492 34492 24.674 0 1 3981500 77770 12227 52032 53140 90457 90457 0.03687234828294095 YIHPYPNNI 9 Unmodified _YIHPYPNNI_ 0 0 0 ENSG00000188649|ENST00000646931|CC2D2B;nc|ENSG00000188649|Q6DHV5-1|CC2D2B;nc|ENSG00000188649|Q6DHV5-2|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B ENSG00000188649|ENST00000646931|CC2D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.525146484375 3 377.525825 1129.55564 0.12393 4.6785E-05 -0.088313 -3.334E-05 0.035613 1.3445E-05 377.86007418399646 39.46 0.25393 39.46 39.321 39.575 0 23 11 3 0 0 0 0.53666 1 21177 21177 2.9952 0 1 3921300 77771 9681 52033 53141 90458 90458 -0.003951411825028117 YIHSVSVVT 9 Unmodified _YIHSVSVVT_ 0 0 0 REV__ENSG00000145214|ENST00000273814|DGKQ REV__ENSG00000145214|ENST00000273814|DGKQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.2789916992188 2 502.7742 1003.53385 0.28711 0.00014435 0.32211 0.00016195 0.60922 0.0003063 502.77432603847626 84.672 0.6653 78.497 78.155 78.82 -6.1757 47 34 2 0 0 0 0.28047 1 55804 55804 18.135 2.2878 1 73386000 + 77772 20759 52034 53142 90459 90459 0.03222054068965008 YIHSWSNK 8 Unmodified _YIHSWSNK_ 0 0 0 REV__ENST00000318240.7_1_18:47009961-47013433:-|nuORF REV__ENST00000318240.7_1_18:47009961-47013433:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.5965576171875 2 517.756341 1033.49813 1.1199 0.00057986 1.0182 0.00052718 2.1381 0.001107 517.7573050882719 81.274 0.88744 75.098 74.77 75.657 -6.1757 128 50 4 0 0 0 0.72953 1 53319 53319 14.582 2.9414 1 103140000 + 77773 25482 52035 53143 90460 90460 -0.017279833880593287 YIIHIDESRY 10 Unmodified _YIIHIDESRY_ 0 0 0 REV__ENSG00000100483|ENST00000395860|VCPKMT REV__ENSG00000100483|ENST00000395860|VCPKMT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.8342895507812 2 654.832777 1307.651 NaN NaN NaN NaN NaN NaN NaN 77.398 1 76.915 76.415 77.415 -0.4826 0 0 0 0.96627 1 42371 42371 4.3292 0 1 + 77774 18073 52036 53144 90461 90461 0.00948167217916307 YIIICIAII 9 Unmodified _YIIICIAII_ 0 0 0 REV__ENST00000462800.1_1_7:77397938-77402638:+|nuORF REV__ENST00000462800.1_1_7:77397938-77402638:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 518.3078002929688 2 517.819564 1033.62458 0.53803 0.0002786 0.63336 0.00032797 1.1714 0.00060657 517.8201885359193 82.424 0.24315 81.929 81.767 82.01 -0.4952 12 9 2 0 0 0 0.203 1 45087 45087 9.3474 0 1 1115100 + 77775 27344 52037 53145 90462 90462 0.10910806792867334 YIIICIAIIKL 11 Unmodified _YIIICIAIIKL_ 0 0 0 REV__ENST00000462800.1_1_7:77397938-77402638:+|nuORF REV__ENST00000462800.1_1_7:77397938-77402638:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 425.9407348632812 3 425.941811 1274.8036 NaN NaN NaN NaN NaN NaN NaN 45.766 1 40.811 40.311 41.311 -4.9549 0 0 0 0.93923 1 28158 28158 3.0723 1.33 1 + 77776 27344 52038 53146 90463 90463 0.17719271360942912 YIIKMVEQQ 9 Unmodified _YIIKMVEQQ_ 0 0 0 nc|ENSG00000205754|G3V0H7|SLCO1B7;nc|ENSG00000257046|F5H094|SLCO1B3-SLCO1B7 nc|ENSG00000205754|G3V0H7|SLCO1B7 nc|ENSG00000205754|G3V0H7|SLCO1B7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7160034179688 2 576.310092 1150.60563 0.74797 0.00043106 -2.8838 -0.001662 -2.1359 -0.0012309 576.3085749559659 73.587 0.44244 73.587 73.365 73.807 0 37 20 3 0 0 0 0.59218 1 40962 40962 1.8442 1.2427 1 715900 77777 16513 52039 53147 90464 90464 0.03635225431139588 YIILHPLIKK 10 Unmodified _YIILHPLIKK_ 0 0 0 REV__ENST00000272067.10_2_2:272273-275200:+|nuORF REV__ENST00000272067.10_2_2:272273-275200:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 619.4050903320312 2 619.405184 1236.79581 NaN NaN NaN NaN NaN NaN NaN 105.4 1 99.225 98.725 99.725 -6.1757 0 0 0 1.0019 1 70627 70627 0.45834 0 1 + 77778 25142 52040 53148 90465 90465 0.1868888015567336 YIIRIYQEL 9 Unmodified _YIIRIYQEL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2327880859375 3 404.23253 1209.67576 0.52627 0.00021274 -0.096744 -3.9107E-05 0.42953 0.00017363 404.5667508210386 57.184 0.26236 57.118 56.958 57.22 -0.066032 28 12 3 0 0 0 0.12424 1 31097 31097 28.495 1.2713 1 10644000 77779 9805 52041 53149 90466 90466 0.07930847091279247 YIISYLHPGN 10 Unmodified _YIISYLHPGN_ 0 0 0 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 ENSG00000265203|ENST00000584701|RBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.873779296875 3 392.873113 1175.59751 -0.3808 -0.00014961 0.85584 0.00033624 0.47505 0.00018663 392.8733051440452 36.695 0.27766 36.716 36.559 36.836 0.021545 39 12 4 0 0 0 0.67033 1 19504 19504 5.7834 0.48655 1 24704000 77780 10858 52042 53150 90467 90467 0.01673414506035442 YIIVEKALMF 10 Unmodified _YIIVEKALMF_ 0 0 0 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 nc|ENSG00000168619|Q9Y3Q7-2|ADAM18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2357788085938 3 409.566632 1225.67807 -0.411 -0.00016833 -4.0159 -0.0016448 -4.4269 -0.0018131 409.5647767582554 31.22 0.30184 31.25 31.131 31.432 0.030106 28 12 3 0 0 0 0.69385 1 16439 16439 3.5871 1.5011 1 10445000 77781 16370 52043 53151 90468 90468 0.07425559504690682 YIKCCQKCF 9 Unmodified _YIKCCQKCF_ 0 0 0 REV__ENST00000376395.8_2_9:86276119-86276320:-|nuORF REV__ENST00000376395.8_2_9:86276119-86276320:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.8812255859375 3 379.174753 1134.50243 NaN NaN NaN NaN NaN NaN NaN 69.125 1 62.949 62.449 63.449 -6.1757 0 0 0 0.7453 1 45136 45136 4.897 1.9018 1 + 77782 26221 52044 53152 90469 90469 -0.059443015526539966 YIKCCQKCF 9 Unmodified _YIKCCQKCF_ 0 0 0 REV__ENST00000376395.8_2_9:86276119-86276320:-|nuORF REV__ENST00000376395.8_2_9:86276119-86276320:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.8814697265625 3 379.174753 1134.50243 NaN NaN NaN NaN NaN NaN NaN 69.705 1 63.529 63.029 64.029 -6.1757 0 0 0 0.7453 1 45527 45527 4.897 1.9018 1 + 77783 26221 52044 53152 90470 90470 -0.059443015526539966 YIKDFFEQMLK 11 Unmodified _YIKDFFEQMLK_ 0 0 0 ENSG00000182993|ENST00000330828|C12orf60 ENSG00000182993|ENST00000330828|C12orf60 ENSG00000182993|ENST00000330828|C12orf60 MSMS AL20221201_MKP_PDAC_01 4 731.373046875 2 731.375963 1460.73737 NaN NaN NaN NaN NaN NaN NaN 94.04 1 87.864 87.364 88.364 -6.1757 0 0 0 0.89305 1 62278 62278 7.609 0.88579 1 77784 9107 52045 53153 90471 90471 0.02543410728253548 YIKFLRSI 8 Unmodified _YIKFLRSI_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.75830078125 2 520.318577 1038.6226 0.54914 0.00028573 -0.5564 -0.00028951 -0.007262 -3.7786E-06 520.3182612678222 58.604 0.24741 58.544 58.432 58.679 -0.060722 21 12 2 0 0 0 8.7369 1 31896 31896 29.082 2.1979 1 4181700 77785 9847;3221 52046 53154 90472 90472 0.10483514099269087 YIKHLQELL 9 Unmodified _YIKHLQELL_ 0 0 0 ENSG00000187855|ENST00000342331|ASCL4 ENSG00000187855|ENST00000342331|ASCL4 ENSG00000187855|ENST00000342331|ASCL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.3411254882812 2 578.839874 1155.66519 1.0327 0.00059779 -0.23612 -0.00013668 0.79662 0.00046111 578.839516932037 93.837 0.14722 87.661 87.585 87.732 -6.1757 13 8 2 0 0 0 0.020973 1 62143 62143 62.573 18.714 1 8843900 77786 9603 52047 53155 90473 90473 0.09358864436853764 YIKHPHLF 8 Unmodified _YIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7943725585938 2 527.795269 1053.57599 -0.29648 -0.00015648 -0.087764 -4.6321E-05 -0.38424 -0.0002028 527.7951371108054 41.692 0.24764 41.69 41.553 41.801 -0.0017929 27 11 3 0 0 0 0.11943 1 22261 22261 93.883 49.476 1 37486000 77787 1970 52048 53156 90474 90474 0.051340742679713 YIKHPHLF 8 Unmodified _YIKHPHLF_ 0 0 0 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 ENSG00000101457|ENST00000372622|DNTTIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1998596191406 3 352.199272 1053.57599 1.8756 0.00066059 -0.1742 -6.1354E-05 1.7014 0.00059924 352.199169310321 87.727 0.57657 81.552 81.312 81.889 -6.1757 71 31 3 0 0 0 0.32412 3 57917 57784;57917;58052 50.855 38.614 1 24426000 77788 1970 52048 53156 90475;90476;90477 90476 0.051340742679713 YIKHPVSL 8 Unmodified _YIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7822265625 2 478.781828 955.549102 0.28234 0.00013518 0.50116 0.00023994 0.7835 0.00037512 478.78190407231824 35.919 0.17449 35.919 35.836 36.01 0 13 8 2 0 0 0 0.23628 1 19043 19043 64.236 34.012 1 2006700 77789 1696 52049 53157 90478 90478 0.06954965656814238 YIKHPVSL 8 Unmodified _YIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7813110351562 2 478.781828 955.549102 -0.3704 -0.00017734 0.24228 0.000116 -0.12812 -6.1343E-05 478.78192104675554 36.068 0.34328 35.818 35.683 36.026 -0.2497 41 15 3 0 0 0 0.077912 2 18879 18879;18980 115.69 64.837 1 47064000 77790 1696 52049 53157 90479;90480 90479 0.06954965656814238 YIKHPVSL 8 Unmodified _YIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.7818603515625 2 478.781828 955.549102 -0.082941 -3.9711E-05 -0.58227 -0.00027878 -0.66521 -0.00031849 478.78156105668313 35.72 0.38844 35.745 35.602 35.99 0.024967 50 18 4 0 0 0 0.10045 2 18851 18851;18951 99.799 45.025 1 55503000 77791 1696 52049 53157 90481;90482 90481 0.06954965656814238 YIKHPVSL 8 Unmodified _YIKHPVSL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 478.7820739746094 2 478.781828 955.549102 0.3997 0.00019137 0.23893 0.00011439 0.63863 0.00030576 478.78185803735073 40.153 0.91817 35.623 35.26 36.179 -4.5294 183 68 3 0 0 0 0.078813 4 24011 23740;23878;24011;24142 111.29 56.513 1 256910000 77792 1696 52049 53157 90483;90484;90485;90486 90485 0.06954965656814238 YIKKNLRVV 9 Unmodified _YIKKNLRVV_ 0 0 0 REV__nc|ENSG00000079335|Q9UNH5-3|CDC14A REV__nc|ENSG00000079335|Q9UNH5-3|CDC14A MSMS AL20221201_MKP_PDAC_01 4 566.8646240234375 2 566.863683 1131.71281 NaN NaN NaN NaN NaN NaN NaN 108.21 1 102.03 101.53 102.53 -6.1757 0 0 0 0.85737 1 72330 72330 0.6015 0 1 + 77793 17646 52050 53158 90487 90487 0.1522256342768742 YIKQIKTF 8 Unmodified _YIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.8106079101562 2 520.810585 1039.60662 NaN NaN NaN NaN NaN NaN NaN 45.184 1 45.156 44.656 45.656 -0.028011 0 0 0 0.069083 1 24262 24262 99.755 47.487 1 77794 2142 52051 53159 90488 90488 0.08839807862364069 YIKQIKTF 8 Unmodified _YIKQIKTF_ 0 0 0 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 ENSG00000103479|ENST00000262133|RBL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.810791015625 2 520.810585 1039.60662 1.2054 0.00062777 -0.28457 -0.00014821 0.92081 0.00047957 520.8104046200401 50.083 0.42851 44.544 44.332 44.76 -5.5391 62 27 3 0 0 0 0.055607 2 31461 31322;31461 134.3 72.938 1 56067000 77795 2142 52051 53159 90489;90490 90490 0.08839807862364069 YIKRRKFTKKK 11 Unmodified _YIKRRKFTKKK_ 0 0 0 REV__ENSG00000172572|ENST00000359062|PDE3A REV__ENSG00000172572|ENST00000359062|PDE3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.6586303710938 3 499.324305 1494.95109 -0.54885 -0.00027405 -0.36469 -0.0001821 -0.91354 -0.00045615 499.6582880103801 103.83 0.1129 103.78 103.69 103.8 -0.048729 6 4 2 0 0 0 0.7453 1 57660 57660 0 0 1 2287100 + 77796 22661 52052 53160 90491 90491 0.22340924009949958 YIKSATEPSDC 11 Unmodified _YIKSATEPSDC_ 0 0 0 REV__ENSG00000089048|ENST00000617257|ESF1 REV__ENSG00000089048|ENST00000617257|ESF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1841430664062 3 405.185028 1212.53325 -0.34082 -0.00013809 1.1638 0.00047157 0.82303 0.00033348 405.18550163194385 20.548 0.28523 20.577 20.401 20.686 0.028355 26 14 2 0 0 0 0.74203 1 10454 10454 0.08335 0.08335 1 904010 + 77797 17826 52053 53161 90492 90492 -0.06451153433044965 YIKSQGTF 8 Unmodified _YIKSQGTF_ 0 0 0 REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF REV__ENST00000413684.1_1_2:91935968-91936997:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 472.246826171875 2 472.247818 942.481082 NaN NaN NaN NaN NaN NaN NaN 27.932 1 24.784 24.284 25.284 -3.1482 0 0 0 0.47897 1 15524 15524 42.095 6.0504 1 + 77798 26738 52054 53162 90493 90493 0.007540960061419355 YIKYTTDSMVF 11 Unmodified _YIKYTTDSMVF_ 0 0 0 REV__ENST00000369798.6_1_6:80750412-80752022:+|nuORF REV__ENST00000369798.6_1_6:80750412-80752022:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.5579833984375 3 456.556573 1366.64789 0.37462 0.00017104 3.3132 0.0015127 3.6879 0.0016837 456.55814187018467 20.137 0.16173 20.147 20.046 20.208 0.010551 15 7 3 0 0 0 0.71036 1 10260 10260 1.3296 0.31607 1 975700 + 77799 26044 52055 53163 90494 90494 -0.020768439511584802 YILAHQLARH 10 Unmodified _YILAHQLARH_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.3465576171875 2 611.346189 1220.67783 0.63993 0.00039122 0.45051 0.00027542 1.0904 0.00066664 611.3465186214777 30.428 0.29142 30.348 30.205 30.496 -0.080429 23 10 3 0 0 0 0.14917 1 15783 15783 39.957 39.957 1 4682200 77800 3680;6083 52056 53164 90495 90495 0.07631320619748294 YILAHQLARH 10 Unmodified _YILAHQLARH_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2344055175781 3 407.899885 1220.67783 0.58451 0.00023842 -0.26482 -0.00010802 0.31969 0.0001304 407.8997485877138 30.428 0.41141 30.348 30.205 30.616 -0.080429 43 15 4 0 0 0 0.66569 1 15867 15867 9.544 1.0997 1 21372000 77801 3680;6083 52056 53164 90496 90496 0.07631320619748294 YILAHQLARH 10 Unmodified _YILAHQLARH_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.3460693359375 2 611.346189 1220.67783 0.1533 9.3722E-05 0.028229 1.7258E-05 0.18153 0.00011098 611.3461704309701 30.214 0.16352 30.244 30.159 30.323 0.030106 9 6 2 0 0 0 0.62068 1 15816 15816 10.074 0 1 591270 77802 3680;6083 52056 53164 90497 90497 0.07631320619748294 YILAHQLARH 10 Unmodified _YILAHQLARH_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 611.346189 1220.67783 -0.69155 -0.00042278 -0.87938 -0.00053761 -1.5709 -0.00096039 611.3455793334238 30.46 0.14342 30.46 30.402 30.546 0 0.10926 -0.0011975 NaN 39.957 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1452800 77803 3680;6083 52056 53164 0.07631320619748294 YILAHQLARH 10 Unmodified _YILAHQLARH_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 nc|ENSG00000150995|Q14643-3|ITPR1;ENSG00000123104|ENST00000381340|ITPR2 ENSG00000123104|ENST00000381340|ITPR2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 611.346189 1220.67783 0.63993 0.00039122 0.45051 0.00027542 1.0904 0.00066664 611.3465186214777 30.428 0.29142 30.348 30.205 30.496 -0.080429 -0.0026853 0.00042858 NaN 39.957 23 10 3 NaN NaN NaN NaN 0 NaN NaN 0 4682200 77804 3680;6083 52056 53164 0.07631320619748294 YILDATNP 8 Unmodified _YILDATNP_ 0 0 0 ENST00000512845.5_1_4:121737455-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-3|PRDM5;ENST00000505484.5_1_4:121737976-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-4|PRDM5;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5 ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 453.73046875 2 453.732 905.449448 NaN NaN NaN NaN NaN NaN NaN 62.25 1 62.25 61.75 62.75 0 0 0 0 0.88073 1 34716 34716 19.439 1.304 1 77805 14627 52057 53165 90498 90498 -0.007058967478087652 YILDATNP 8 Unmodified _YILDATNP_ 0 0 0 ENST00000512845.5_1_4:121737455-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-3|PRDM5;ENST00000505484.5_1_4:121737976-121843799:-|nuORF;nc|ENSG00000138738|Q9NQX1-4|PRDM5;nc|ENSG00000138738|Q9NQX1-2|PRDM5;ENSG00000138738|ENST00000264808|PRDM5 ENST00000512845.5_1_4:121737455-121843799:-|nuORF ENST00000512845.5_1_4:121737455-121843799:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 453.7305603027344 2 453.732 905.449448 NaN NaN NaN NaN NaN NaN NaN 62.836 1 62.35 61.85 62.85 -0.48617 0 0 0 0.65904 1 34257 34257 30.225 3.3412 1 77806 14627 52057 53165 90499 90499 -0.007058967478087652 YILDEKKILE 10 Unmodified _YILDEKKILE_ 0 0 0 REV__ENSG00000145331|ENST00000394876|TRMT10A REV__ENSG00000145331|ENST00000394876|TRMT10A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.8930969238281 3 421.911345 1262.7122 0.78281 0.00033027 4.181 0.001764 4.9638 0.0020943 421.9136905348597 57.891 0.078583 57.825 57.755 57.834 -0.066036 5 3 2 0 0 0 0.2384 1 31516 31516 5.4027 1.2132 1 895830 + 77807 20766 52058 53166 90500 90500 0.09135679197333957 YILDFAYLC 9 Unmodified _YILDFAYLC_ 0 0 0 REV__nc|ENSG00000105486|P18858-2|LIG1 REV__nc|ENSG00000105486|P18858-2|LIG1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.32421875 2 560.772811 1119.53107 1.3093 0.00073424 -0.50254 -0.00028181 0.80679 0.00045243 560.7727278183481 91.744 0.94154 85.568 85.207 86.149 -6.1757 80 54 2 0 0 0 0.203 1 60485 60485 9.3474 7.0447 1 16731000 + 77808 18429 52059 53167 90501 90501 -0.023915373802083195 YILEKKWQ 8 Unmodified _YILEKKWQ_ 0 0 0 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8783569335938 3 369.878087 1106.61243 1.1163 0.0004129 -0.079639 -2.9457E-05 1.0367 0.00038344 369.8781337374973 44.964 0.40016 40.112 39.893 40.294 -4.852 62 26 3 0 0 0 0.66338 1 27430 27430 20.454 4.715 1 38231000 77809 3891 52060 53168 90502 90502 0.0633890637402601 YILEKKWQ 8 Unmodified _YILEKKWQ_ 0 0 0 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 369.878087 1106.61243 0.64852 0.00023987 -0.35285 -0.00013051 0.29566 0.00010936 369.87788049444714 40.616 0.24598 40.313 40.193 40.439 -0.30304 0.075681 -0.00025482 NaN 20.454 35 11 4 NaN NaN NaN NaN 0 NaN NaN 0 12247000 77810 3891 52060 53168 0.0633890637402601 YILEKKWQ 8 Unmodified _YILEKKWQ_ 0 0 0 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 ENSG00000125827|ENST00000246024|TMX4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 369.878087 1106.61243 0.35951 0.00013297 -0.22074 -8.1647E-05 0.13877 5.1327E-05 369.8780222301597 40.29 0.212 40.295 40.19 40.402 0.0050545 0.058276 -0.00010822 NaN 20.454 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1498400 77811 3891 52060 53168 0.0633890637402601 YILENLSK 8 Unmodified _YILENLSK_ 0 0 0 REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2756042480469 2 490.276575 978.538597 0.3698 0.0001813 0.16888 8.2798E-05 0.53868 0.0002641 490.2765893911251 39.189 0.37091 39.189 38.97 39.341 0 65 17 5 0 0 0 0.25522 2 20910 20910;21011 61.357 15.337 1 97486000 + 77812 27182 52061 53169 90503;90504 90503 0.048469382116991255 YILENLSK 8 Unmodified _YILENLSK_ 0 0 0 REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.27685546875 2 490.276575 978.538597 0.13161 6.4526E-05 0.10585 5.1895E-05 0.23746 0.00011642 490.27655666062907 39.42 0.35226 39.123 38.932 39.285 -0.29716 47 16 4 0 0 0 0.25522 2 20842 20738;20842 61.357 15.337 1 41557000 + 77813 27182 52061 53169 90505;90506 90506 0.048469382116991255 YILENLSK 8 Unmodified _YILENLSK_ 0 0 0 REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.2766418457031 2 490.276575 978.538597 0.52519 0.00025749 -0.35071 -0.00017194 0.17449 8.5547E-05 490.27723265691117 39.081 0.38269 39.092 38.92 39.303 0.011456 39 17 3 0 0 0 0.40602 1 20752 20752 43.858 5.8843 1 5598100 + 77814 27182 52061 53169 90507 90507 0.048469382116991255 YILENLSK 8 Unmodified _YILENLSK_ 0 0 0 REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 490.276575 978.538597 0.3698 0.0001813 0.16888 8.2798E-05 0.53868 0.0002641 490.2765893911251 39.189 0.37091 39.189 38.97 39.341 0 0.054253 5.6655E-05 NaN 61.357 65 17 5 NaN NaN NaN NaN 0 NaN NaN 0 97486000 + 77815 27182 52061 53169 0.048469382116991255 YILENLSK 8 Unmodified _YILENLSK_ 0 0 0 REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 490.276575 978.538597 0.13161 6.4526E-05 0.10585 5.1895E-05 0.23746 0.00011642 490.27655666062907 39.42 0.35226 39.123 38.932 39.285 -0.29716 -0.011953 -5.1504E-06 NaN 61.357 47 16 4 NaN NaN NaN NaN 0 NaN NaN 0 41557000 + 77816 27182 52061 53169 0.048469382116991255 YILFNLFY 8 Unmodified _YILFNLFY_ 0 0 0 ENSG00000183185|ENST00000472788|GABRR3 ENSG00000183185|ENST00000472788|GABRR3 ENSG00000183185|ENST00000472788|GABRR3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 546.7918090820312 2 546.791861 1091.56917 NaN NaN NaN NaN NaN NaN NaN 91.325 1 90.831 90.331 91.331 -0.49457 0 0 0 0.97444 1 49920 49920 0.79363 0 1 77817 9125 52062 53170 90508 90508 0.027047165967360343 YILGLGSGHY 10 Unmodified _YILGLGSGHY_ 0 0 0 ENST00000373204.5_1_1:36387420-36387693:+|nuORF ENST00000373204.5_1_1:36387420-36387693:+|nuORF ENST00000373204.5_1_1:36387420-36387693:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.2801513671875 2 540.279649 1078.54475 0.63741 0.00034438 0.16566 8.9501E-05 0.80307 0.00043388 540.2797408392912 58.483 0.19594 58.422 58.274 58.47 -0.060719 15 9 2 0 0 0 0.50944 1 31868 31868 15.847 1.0089 1 1758300 77818 12403 52063 53171 90509 90509 0.008614564432491534 YILGPEEEDAG 11 Unmodified _YILGPEEEDAG_ 0 0 0 ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR ENSG00000027644|ENST00000368195|INSRR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1844787597656 3 398.183793 1191.52955 -0.00020072 -7.9924E-08 0.066153 2.6341E-05 0.065952 2.6261E-05 398.1839609123536 46.839 0.36629 46.839 46.656 47.022 0 56 17 5 0 0 0 0.54936 1 25580 25580 7.4771 0 1 28944000 77819 566 52064 53172 90510 90510 -0.05855499935273656 YILGQADHFI 10 Unmodified _YILGQADHFI_ 0 0 0 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 ENSG00000101346|ENST00000375749|POFUT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.873291015625 3 392.873113 1175.59751 -0.3808 -0.00014961 0.85584 0.00033624 0.47505 0.00018663 392.8733051440452 36.695 0.27766 36.716 36.559 36.836 0.021545 39 12 4 0 0 0 0.54684 1 19398 19398 8.4443 0 1 24704000 77820 1950 52065 53173 90511 90511 0.01673414506035442 YILGRVPRR 9 Unmodified _YILGRVPRR_ 0 0 0 REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3525390625 2 565.351274 1128.688 2.5607 0.0014477 0.14801 8.3677E-05 2.7088 0.0015314 565.3513039652946 96.126 0.4541 96.119 95.881 96.335 -0.007019 40 15 3 0 0 0 0.087258 2 53372 53372;53495 36.044 14.298 1 10180000 + 77821 26236 52066 53174 90512;90513 90512 0.12879928344977998 YILKSEAFR 9 Unmodified _YILKSEAFR_ 0 0 0 REV__ENSG00000128833|ENST00000261839|MYO5C;REV__ENST00000541028.5_1_15:52553308-52587917:-|nuORF REV__ENSG00000128833|ENST00000261839|MYO5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.5455627441406 3 376.213358 1125.61824 0.27959 0.00010518 0.82317 0.00030969 1.1028 0.00041487 376.21348134511993 54.699 0.39652 54.632 54.504 54.9 -0.066936 43 19 3 0 0 0 0.21819 1 29860 29860 1.0715 0 1 9878700 + 77822 19637;28589 52067 53175 90514 90514 0.060460048857066795 YILKSQLYI 9 Unmodified _YILKSQLYI_ 0 0 0 nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2 nc|ENSG00000157064|Q9BZQ4-2|NMNAT2 nc|ENSG00000157064|Q9BZQ4-2|NMNAT2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.2861328125 2 570.8368 1139.65905 1.3198 0.0007534 -2.5558 -0.001459 -1.236 -0.00070557 571.3357717997525 53.618 0.23098 47.814 47.759 47.99 -5.8042 19 14 2 0 0 0 0.20139 1 33992 33992 10.824 0 1 10356000 77823 6497 52068 53176 90515 90515 0.09480346205350543 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2984619140625 2 547.298039 1092.58152 0.23853 0.00013055 0.20792 0.00011379 0.44645 0.00024434 547.2981093407875 37.776 0.34435 37.776 37.625 37.969 0 50 16 4 0 0 0 0.095098 2 20109 20109;20221 47.749 5.902 1 29883000 77824 7094 52069 53177 90516;90517 90516 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.299072265625 2 547.298039 1092.58152 0.2524 0.00013814 -2.1076 -0.0011535 -1.8552 -0.0010154 547.2975363147251 39.932 0.578 39.932 39.553 40.131 0 71 28 4 0 0 0 0.0575 1 21465 21465 56.177 7.8312 1 13904000 77825 7094 52069 53177 90518 90518 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.29736328125 2 547.298039 1092.58152 -0.085787 -4.6951E-05 0.68881 0.00037698 0.60302 0.00033003 547.2982550519777 38.054 0.30728 37.782 37.638 37.946 -0.27133 33 14 3 0 0 0 0.0575 1 19996 19996 56.177 4.5472 1 10173000 77826 7094 52069 53177 90519 90519 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2970581054688 2 547.298039 1092.58152 -0.10855 -5.9412E-05 -0.90903 -0.00049751 -1.0176 -0.00055692 547.2973907693597 38.619 0.78978 38.332 38.071 38.861 -0.28687 126 36 5 0 0 0 0.095098 1 20362 20362 47.749 5.9091 1 1408200000 77827 7094 52069 53177 90520 90520 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2970581054688 2 547.298039 1092.58152 0.24078 0.00013178 -0.65956 -0.00036097 -0.41878 -0.0002292 547.2976317003781 40.209 0.24587 39.911 39.782 40.028 -0.29716 31 11 3 0 0 0 0.067957 1 21215 21215 53.833 11.993 1 7173700 77828 7094 52069 53177 90521 90521 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2979125976562 2 547.298039 1092.58152 0.086558 4.7373E-05 -0.1177 -6.4417E-05 -0.031142 -1.7044E-05 547.2979461681234 38.285 0.53325 38.302 38.09 38.624 0.01704 93 24 6 0 0 0 0.0575 2 20378 20378;20486 56.177 7.8312 1 192600000 77829 7094 52069 53177 90522;90523 90522 0.0389370826915183 YILLGGSDKQ 10 Unmodified _YILLGGSDKQ_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 547.298039 1092.58152 -0.042051 -2.3015E-05 0.43447 0.00023778 0.39242 0.00021477 547.2984853613929 37.725 0.16252 37.742 37.653 37.816 0.01704 -0.024495 1.7729E-05 NaN 56.177 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1265300 77830 7094 52069 53177 0.0389370826915183 YILLGNFAF 9 Unmodified _YILLGNFAF_ 0 0 0 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 ENSG00000176219|ENST00000315519|OR11H6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.1980895996094 3 353.195416 1056.56442 1.6495 0.0005826 3.6853 0.0013016 5.3348 0.0018842 353.19771953408616 35.636 0.65465 31.444 31.04 31.694 -4.1928 83 40 3 0 0 0 0.41742 1 20813 20813 7.609 0 1 15630000 77831 8576 52070 53178 90524 90524 0.03839832453991221 YILLSGYPPF 10 Unmodified _YILLSGYPPF_ 0 0 0 ENST00000587416.5_1_19:2040939-2042512:-|nuORF;nc|ENSG00000099875|Q9HBH9-2|MKNK2;ENSG00000099875|ENST00000250896|MKNK2 ENST00000587416.5_1_19:2040939-2042512:-|nuORF ENST00000587416.5_1_19:2040939-2042512:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 585.2415771484375 2 585.3157 1168.61685 0.94701 0.0005543 2.7143 0.0015887 3.6613 0.002143 585.8165873533832 99.35 0.16171 93.175 93.066 93.228 -6.1757 15 10 2 0 0 0 0.23117 1 66172 66172 11.64 0.81637 1 25860000 77832 1716 52071 53179 90525 90525 0.039283707969616444 YILPRWEI 8 Unmodified _YILPRWEI_ 0 0 0 ENST00000272542.7_1_2:113416849-113416969:+|nuORF ENST00000272542.7_1_2:113416849-113416969:+|nuORF ENST00000272542.7_1_2:113416849-113416969:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8750915527344 3 363.874565 1088.60187 1.7811 0.00064811 0.56925 0.00020713 2.3504 0.00085524 363.8746554945832 50.065 0.25591 44.526 44.439 44.695 -5.5391 28 16 2 0 0 0 0.70102 1 31360 31360 17.113 0.96379 1 15163000 77833 11372 52072 53180 90526 90526 0.061109237195978494 YILPTPPPPRQ 11 Unmodified _YILPTPPPPRQ_ 0 0 0 REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF REV__ENST00000264079.10_1_19:7595197-7598755:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.9119262695312 3 426.911679 1277.71321 0.47939 0.00020466 -0.096649 -4.126E-05 0.38274 0.00016339 426.9115029322833 50.881 0.25496 50.827 50.708 50.963 -0.053871 29 12 3 0 0 0 0.65096 1 27512 27512 8.7518 0 1 3369300 + 77834 25058 52073 53181 90527 90527 0.08545938356883198 YILQNFVPPND 11 Unmodified _YILQNFVPPND_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 660.8359375 2 660.335153 1318.65575 -0.6641 -0.00043853 0.34097 0.00022516 -0.32313 -0.00021338 660.3354079240954 77.524 0.70595 77.042 76.647 77.353 -0.4826 69 32 3 0 0 0 0.66428 1 42407 42407 7.609 0 1 2277900 + 77835 22004 52074 53182 90528 90528 0.009170513606704844 YILQNFVPPND 11 Unmodified _YILQNFVPPND_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 660.3348999023438 2 660.335153 1318.65575 -0.097113 -6.4127E-05 0.01891 1.2487E-05 -0.078203 -5.164E-05 660.334942538117 84.639 0.65086 78.464 78.206 78.857 -6.1757 60 37 2 0 0 0 0.33405 3 55728 55580;55728;55854 24.991 2.3329 1 19071000 + 77836 22004 52074 53182 90529;90530;90531 90530 0.009170513606704844 YILRRYWFPF 10 Unmodified _YILRRYWFPF_ 0 0 0 REV__ENSG00000188334|ENST00000344839|BSPH1 REV__ENSG00000188334|ENST00000344839|BSPH1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.6006469726562 3 487.599435 1459.77648 NaN NaN NaN NaN NaN NaN NaN 27.472 1 27.501 27.001 28.001 0.028664 0 0 0 0.99897 1 14277 14277 0.77653 0.27058 1 + 77837 23706 52075 53183 90532 90532 0.0649792386475383 YILRSKKLF 9 Unmodified _YILRSKKLF_ 0 0 0 REV__nc|ENSG00000176024|Q6PF04-2|ZNF613 REV__nc|ENSG00000176024|Q6PF04-2|ZNF613 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.9137268066406 3 389.913131 1166.71756 NaN NaN NaN NaN NaN NaN NaN 36.296 1 36.296 35.796 36.796 0 0 0 0 0.83812 1 19242 19242 2.9952 0.49676 1 + 77838 22905 52076 53184 90533 90533 0.1408744757045497 YILSGHSTVNF 11 Unmodified _YILSGHSTVNF_ 0 0 0 REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF REV__ENST00000495668.1_1_11:5664055-5664936:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3112182617188 2 619.31422 1236.61389 0.59606 0.00036915 -1.1626 -0.00072003 -0.56657 -0.00035088 619.3129479250066 78.453 0.30898 78.505 78.368 78.677 0.052444 28 12 3 0 0 0 0.28407 1 43327 43327 27.629 2.2295 1 5409900 + 77839 24569 52077 53185 90534 90534 0.005044956721349081 YILSSDQSYH 10 Unmodified _YILSSDQSYH_ 0 0 0 REV__ENSG00000139182|ENST00000266546|CLSTN3 REV__ENSG00000139182|ENST00000266546|CLSTN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8567504882812 3 404.855899 1211.54587 -0.059193 -2.3965E-05 1.1386 0.00046098 1.0794 0.00043702 404.856410313833 22.276 0.25594 22.294 22.137 22.393 0.01749 15 10 2 0 0 0 0.70734 1 11454 11454 2.086 0.34373 1 831480 + 77840 20392 52078 53186 90535 90535 -0.051443739785327125 YILTCRFICK 10 Unmodified _YILTCRFICK_ 0 0 0 REV__ENST00000392717.6_1_2:165542339-165542447:-|nuORF REV__ENST00000392717.6_1_2:165542339-165542447:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3363037109375 2 630.335587 1258.65662 0.64211 0.00040475 -1.6667 -0.0010506 -1.0246 -0.00064585 630.3340970938264 65.067 0.28473 65.067 64.895 65.18 7.6294E-06 28 13 3 0 0 0 0.46514 1 35663 35663 18.146 2.8979 1 3390900 + 77841 26397 52079 53187 90536 90536 0.037638512043486116 YILTHPEL 8 Unmodified _YILTHPEL_ 0 0 0 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 nc|ENSG00000157445|Q8IZS8-3|CACNA2D3 MSMS AL20221201_MKP_PDAC_01 4 493.2716674804688 2 493.271293 984.528032 NaN NaN NaN NaN NaN NaN NaN 78.42 1 72.244 71.744 72.744 -6.1757 0 0 0 0.59893 1 51329 51329 34.187 1.7337 1 77842 6519 52080 53188 90537 90537 0.035149555572729696 YILTIPLAL 9 Unmodified _YILTIPLAL_ 0 0 0 REV__KCNG3|p.F407L|1|0.32|ENSG00000171126|chr2:42444024-42444024|A/T|missense_variant REV__KCNG3|p.F407L|1|0.32|ENSG00000171126|chr2:42444024-42444024|A/T|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.8228759765625 2 508.823161 1015.63177 0.55196 0.00028085 0.0070243 3.5741E-06 0.55899 0.00028443 508.8226438150405 101.9 0.11724 95.726 95.662 95.78 -6.1757 11 5 3 0 0 0 0.016494 1 68415 68415 67.035 0 1 28909000 + 77843 29396 52081 53189 90538 90538 0.12457862664939512 YILTSKEL 8 Unmodified _YILTSKEL_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.7797241210938 2 483.778951 965.543348 0.8875 0.00042935 -0.70034 -0.00033881 0.18716 9.0546E-05 483.7793523216803 78.909 0.52452 72.733 72.531 73.056 -6.1757 51 29 2 0 0 0 0.67481 1 51613 51613 19.439 1.304 1 7679200 77844 1323 52082 53190 90539 90539 0.059198223544854045 YILVLSPEL 9 Unmodified _YILVLSPEL_ 0 0 0 REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.811279296875 2 523.810251 1045.60595 0.2493 0.00013058 2.1485 0.0011254 2.3978 0.001256 523.8112210746676 98.683 0.20715 98.49 98.392 98.599 -0.19321 10 6 2 0 0 0 0.54444 1 53922 53922 4.756 0 1 490280 + 77845 26471 52083 53191 90540 90540 0.08496968422650752 YILVLSPEL 9 Unmodified _YILVLSPEL_ 0 0 0 REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8110961914062 2 523.810251 1045.60595 0.55009 0.00028814 -0.07201 -3.772E-05 0.47808 0.00025042 523.8099488910893 100.62 0.099388 94.448 94.389 94.488 -6.1757 15 6 3 0 0 0 0.25297 1 67327 67327 19.439 0 1 69001000 + 77846 26471 52083 53191 90541 90541 0.08496968422650752 YILVLSPEL 9 Unmodified _YILVLSPEL_ 0 0 0 REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF REV__ENST00000395246.5_1_5:130695145-130695181:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 523.810251 1045.60595 0.2493 0.00013058 2.1485 0.0011254 2.3978 0.001256 523.8112210746676 98.683 0.20715 98.49 98.392 98.599 -0.19321 0 0 NaN 4.756 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 490280 + 77847 26471 52083 53191 0.08496968422650752 YILVVSQGS 9 Unmodified _YILVVSQGS_ 0 0 0 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 ENSG00000086288|ENST00000199447|NME8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2698364257812 2 483.26875 964.522947 0.16593 8.0187E-05 2.6501 0.0012807 2.816 0.0013609 483.2702806746306 16.926 0.035736 16.931 16.905 16.941 0.0050564 8 5 2 0 0 0 0.58865 1 8506 8506 2.0598 1.2661 1 214290 77848 1433 52084 53192 90542 90542 0.03926651694678185 YILWALLFA 9 Unmodified _YILWALLFA_ 0 0 0 nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.78857421875 2 555.323328 1108.6321 0.67949 0.00037734 -1.7415 -0.0009671 -1.062 -0.00058976 555.3227542033711 69.206 0.16594 69.237 69.129 69.295 0.030914 10 7 2 0 0 0 0.203 1 38037 38037 9.3474 0 1 1390800 77849 1106 52085 53193 90543 90543 0.08213282384804188 YIMEDSHMF 9 Unmodified _YIMEDSHMF_ 0 0 0 REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF REV__ENST00000523711.5_1_8:1824717-1874701:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.4970397949219 3 391.496549 1171.46782 -0.05668 -2.219E-05 1.2207 0.00047791 1.1641 0.00045572 391.4970722053245 32.198 0.2616 32.069 31.961 32.222 -0.12915 19 9 3 0 0 0 0.57331 1 16771 16771 2.9952 0.26005 1 1934100 + 77850 28318 52086 53194 90544 90544 -0.1110584615978496 YIMGGYYYY 9 Unmodified _YIMGGYYYY_ 0 0 0 REV__nc|ENSG00000141030|Q9UNS2-2|COPS3 REV__nc|ENSG00000141030|Q9UNS2-2|COPS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1714782714844 3 398.172171 1191.49468 NaN NaN NaN NaN NaN NaN NaN 33.421 1 33.421 32.921 33.921 0 0 0 0 0.82015 1 17530 17530 2.9952 0 1 + 77851 20514 52087 53195 90545 90545 -0.09340414276925912 YIMKAIMRSF 10 Unmodified _YIMKAIMRSF_ 0 0 0 ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L ENSG00000124207|ENST00000262982|CSE1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.3366088867188 2 630.335587 1258.65662 0.43707 0.0002755 0.96215 0.00060648 1.3992 0.00088198 630.335925700664 56.631 0.43219 50.655 50.446 50.879 -5.9769 54 24 3 0 0 0 0.50944 1 36214 36214 15.847 15.847 1 46693000 77852 3762;16168 52088 53196 90546 90546 0.037638512043486116 YIMMVYLSFY 10 Unmodified _YIMMVYLSFY_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 444.2157592773438 3 443.880111 1328.6185 0.35143 0.00015599 1.1731 0.00052072 1.5245 0.00067672 443.8804926858639 40.245 0.27086 39.948 39.843 40.114 -0.29716 25 12 3 0 0 0 0.68719 1 21266 21266 4.1895 0.31317 1 2859500 + 77853 21563 52089 53197 90547 90547 -0.032660795009405774 YIMMVYLSFY 10 Unmodified _YIMMVYLSFY_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 443.880111 1328.6185 0.2836 0.00012589 -0.00053937 -2.3942E-07 0.28307 0.00012565 443.88032759635547 39.901 0.12057 39.901 39.812 39.932 0 -0.02345 -0.0010273 NaN 4.1895 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 958790 + 77854 21563 52089 53197 -0.032660795009405774 YIMMVYLSFY 10 Unmodified _YIMMVYLSFY_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 443.880111 1328.6185 0.35143 0.00015599 1.1731 0.00052072 1.5245 0.00067672 443.8804926858639 40.245 0.27086 39.948 39.843 40.114 -0.29716 0.02345 0.00053555 NaN 4.1895 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2859500 + 77855 21563 52089 53197 -0.032660795009405774 YIMPSPSSNAF 11 Unmodified _YIMPSPSSNAF_ 0 0 0 ENSG00000112837|ENST00000369663|TBX18 ENSG00000112837|ENST00000369663|TBX18 ENSG00000112837|ENST00000369663|TBX18 MSMS AL20221201_MKP_PDAC_01 4 405.1892700195312 3 405.190113 1212.54851 NaN NaN NaN NaN NaN NaN NaN 83.087 1 76.911 76.411 77.411 -6.1757 0 0 0 0.93933 1 54621 54621 4.7159 3.6445 1 77856 2924 52090 53198 90548 90548 -0.04926241845214463 YINDFQNQF 9 Unmodified _YINDFQNQF_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.7691650390625 2 594.769645 1187.52474 0.84314 0.00050147 -2.724 -0.0016202 -1.8809 -0.0011187 594.7683193089528 100.56 0.14944 100.52 100.48 100.63 -0.04216 8 5 2 0 0 0 0.54213 1 55888 55888 4.3292 0 1 6576300 + 77857 17185 52091 53199 90549 90549 -0.06152339287405084 YINDFQNQF 9 Unmodified _YINDFQNQF_ 0 0 0 REV__ENSG00000039139|ENST00000265104|DNAH5 REV__ENSG00000039139|ENST00000265104|DNAH5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 594.769645 1187.52474 0.84314 0.00050147 -2.724 -0.0016202 -1.8809 -0.0011187 594.7683193089528 100.56 0.14944 100.52 100.48 100.63 -0.04216 0 0 NaN 4.3292 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 6576300 + 77858 17185 52091 53199 -0.06152339287405084 YINEQTDSDDF 11 Unmodified _YINEQTDSDDF_ 0 0 0 REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 449.5179748535156 3 449.517612 1345.53101 0.32165 0.00014459 1.6103 0.00072385 1.9319 0.00086843 449.5182656202732 37.545 0.17516 37.562 37.498 37.673 0.01704 13 8 2 0 0 0 0.72952 1 19952 19952 0.50596 0 1 3728800 + 77859 18308 52092 53200 90550 90550 -0.1279391063719686 YINLTEESLL 10 Unmodified _YINLTEESLL_ 0 0 0 REV__ENSG00000133256|ENST00000496514|PDE6B REV__ENSG00000133256|ENST00000496514|PDE6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8152465820312 2 597.816261 1193.61797 0.016968 1.0144E-05 0.45414 0.00027149 0.47111 0.00028163 597.8164623379829 83.977 0.3209 83.977 83.792 84.112 0 37 15 3 0 0 0 0.6606 1 46509 46509 7.2892 0 1 1681800 + 77860 19918 52093 53201 90551 90551 0.02890540375187811 YINNKAKII 9 Unmodified _YINNKAKII_ 0 0 0 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 359.5540161132812 3 359.553603 1075.63898 NaN NaN NaN NaN NaN NaN NaN 58.814 1 52.739 52.239 53.239 -6.0745 0 0 0 0.49196 1 37711 37711 16.149 0.41048 1 77861 4775 52094 53202 90552 90552 0.1041859526535518 YINPHFMECTF 11 Unmodified _YINPHFMECTF_ 0 0 0 REV__ENST00000491513.5_1_21:46191294-46199096:-|nuORF REV__ENST00000491513.5_1_21:46191294-46199096:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 701.3049926757812 2 701.301941 1400.58933 NaN NaN NaN NaN NaN NaN NaN 92.862 1 86.686 86.186 87.186 -6.1757 0 0 0 0.92234 1 61426 61426 6.2058 1.8765 1 + 77862 23442 52095 53203 90553 90553 -0.0949422379724183 YINPSFIQIF 10 Unmodified _YINPSFIQIF_ 0 0 0 REV__ENSG00000121318|ENST00000240619|TAS2R10 REV__ENSG00000121318|ENST00000240619|TAS2R10 MSMS AL20221201_MKP_PDAC_01 4 621.3320922851562 2 621.331882 1240.64921 NaN NaN NaN NaN NaN NaN NaN 96.721 1 90.546 90.046 91.046 -6.1757 0 0 0 0.5926 1 64098 64098 21.747 3.6003 1 + 77863 19289 52096 53204 90554 90554 0.03851158199950078 YINSGLNP 8 Unmodified _YINSGLNP_ 0 0 0 nc|ENSG00000164270|Q13639-7|HTR4;nc|ENSG00000164270|Q13639-3|HTR4;nc|ENSG00000164270|Q13639-5|HTR4;nc|ENSG00000164270|Q13639-4|HTR4;nc|ENSG00000164270|Q13639-2|HTR4;ENSG00000164270|ENST00000377888|HTR4;nc|ENSG00000164270|Q13639-6|HTR4;nc|ENSG00000164270|Q13639-9|HTR4;nc|ENSG00000164270|Q13639-8|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.2248229980469 2 439.224342 876.434132 0.68733 0.00030189 -0.124 -5.4465E-05 0.56333 0.00024743 439.2242533166229 60.402 0.28212 60.402 60.254 60.536 0 17 12 2 0 0 0 0.52622 1 33667 33667 32.305 1.6689 1 1565300 77864 7170 52097 53205 90555 90555 -0.009027635449911031 YINSGLNP 8 Unmodified _YINSGLNP_ 0 0 0 nc|ENSG00000164270|Q13639-7|HTR4;nc|ENSG00000164270|Q13639-3|HTR4;nc|ENSG00000164270|Q13639-5|HTR4;nc|ENSG00000164270|Q13639-4|HTR4;nc|ENSG00000164270|Q13639-2|HTR4;ENSG00000164270|ENST00000377888|HTR4;nc|ENSG00000164270|Q13639-6|HTR4;nc|ENSG00000164270|Q13639-9|HTR4;nc|ENSG00000164270|Q13639-8|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 nc|ENSG00000164270|Q13639-7|HTR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 877.4413452148438 1 877.441409 876.434132 0.54959 0.00048224 -0.12325 -0.00010815 0.42634 0.00037409 877.4409187383164 60.417 0.31042 60.417 60.225 60.536 0 19 13 2 0 0 0 0.27285 1 33671 33671 58.679 4.846 1 1388500 77865 7170 52097 53205 90556 90556 -0.009027635449911031 YIPDATWYDYE 11 Unmodified _YIPDATWYDYE_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.2063598632812 3 479.206597 1434.59796 0.6554 0.00031407 1.1244 0.00053884 1.7798 0.00085291 479.2072341425463 67.606 0.33578 67.124 66.963 67.299 -0.48219 52 14 5 0 0 0 0.72981 1 36908 36908 1.4551 0.94916 1 5922300 77866 10814 52098 53206 90557 90557 -0.10195255355415611 YIPDATWYDYE 11 Unmodified _YIPDATWYDYE_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 479.206597 1434.59796 0.6554 0.00031407 1.1244 0.00053884 1.7798 0.00085291 479.2072341425463 67.606 0.33578 67.124 66.963 67.299 -0.48219 0.019203 -0.0002278 NaN 1.4551 52 14 5 NaN NaN NaN NaN 0 NaN NaN 0 5922300 77867 10814 52098 53206 -0.10195255355415611 YIPDATWYDYE 11 Unmodified _YIPDATWYDYE_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 479.206597 1434.59796 0.60198 0.00028847 1.7751 0.00085066 2.3771 0.0011391 479.5417060057721 67.068 0.25667 67.086 66.961 67.218 0.018028 -0.019203 0.00070767 NaN 1.4551 29 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2266900 77868 10814 52098 53206 -0.10195255355415611 YIPDSGCSYL 10 Unmodified _YIPDSGCSYL_ 0 0 0 nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7498779296875 2 559.247157 1116.47976 0.40167 0.00022463 -0.83612 -0.0004676 -0.43445 -0.00024297 559.7485934527953 65.757 0.64715 65.757 65.528 66.175 0 70 31 4 0 0 0 0.5905 1 36700 36700 11.64 0.81637 1 9492300 77869 9143 52099 53207 90558 90558 -0.07381906144928507 YIPEGEILV 9 Unmodified _YIPEGEILV_ 0 0 0 ENSG00000023734|ENST00000419869|STRAP;nc|ENSG00000023734|Q9Y3F4-2|STRAP ENSG00000023734|ENST00000419869|STRAP ENSG00000023734|ENST00000419869|STRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1032.560913085938 1 1032.56119 1031.55391 -0.35515 -0.00036672 -0.012536 -1.2944E-05 -0.36769 -0.00037966 1032.5607414261247 90.381 0.95052 90.381 90.02 90.971 0 60 53 2 0 0 0 0.55775 1 49825 49825 3.9444 0 1 799790 77870 546 52100 53208 90559 90559 0.039398050088948366 YIPEIQENF 9 Unmodified _YIPEIQENF_ 0 0 0 REV__ENSG00000153767|ENST00000283875|GTF2E1 REV__ENSG00000153767|ENST00000283875|GTF2E1 MSMS AL20221201_MKP_PDAC_01 4 576.7830810546875 2 576.782222 1151.54989 NaN NaN NaN NaN NaN NaN NaN 68.899 1 62.724 62.224 63.224 -6.1757 0 0 0 0.17247 1 44984 44984 34.102 6.4736 1 + 77871 21181 52101 53209 90560 90560 -0.019822844848249588 YIPHFLYPF 9 Unmodified _YIPHFLYPF_ 0 0 0 L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|41|2|anti-sense L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|41|2|anti-sense L1MA5_dup3310|chr12:13370562-13371174:-|1.1388203117754578|0.0494638783449475|4.53|166.0|41|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.311279296875 2 598.810585 1195.60662 0.52577 0.00031484 -3.3493 -0.0020056 -2.8236 -0.0016908 599.3105894262739 53.715 0.21426 53.263 53.148 53.362 -0.45173 16 10 2 0 0 0 0.3554 1 29092 29092 14.582 2.0501 1 3247800 77872 15943 52102 53210 90561 90561 0.016638078623373076 YIPRAPTFL 9 Unmodified _YIPRAPTFL_ 0 0 0 ENSG00000145700|ENST00000506364|ANKRD31;nc|ENSG00000145700|Q8N7Z5|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 ENSG00000145700|ENST00000506364|ANKRD31 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.8735046386719 3 359.874565 1076.60187 NaN NaN NaN NaN NaN NaN NaN 20.005 1 20.005 19.505 20.505 0 0 0 0 0.43483 1 10044 10044 18.146 5.6148 1 77873 5713 52103 53211 90562 90562 0.06662923719591163 YIPTAILWI 9 Unmodified _YIPTAILWI_ 0 0 0 nc|ENSG00000058799|Q9Y548-2|YIPF1;ENSG00000058799|ENST00000072644|YIPF1 nc|ENSG00000058799|Q9Y548-2|YIPF1 nc|ENSG00000058799|Q9Y548-2|YIPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3212890625 2 545.320786 1088.62702 0.67576 0.00036851 0.3367 0.00018361 1.0125 0.00055212 545.320937207246 101.6 0.13165 95.422 95.351 95.483 -6.1757 17 6 4 0 0 0 0.094149 1 68189 68189 46.921 0 1 59744000 77874 808 52104 53212 90563 90563 0.08624978522198035 YIPVAAGVGQR 11 Unmodified _YIPVAAGVGQR_ 0 0 0 REV__ENST00000375980.8_1_1:15755792-15756005:+|nuORF REV__ENST00000375980.8_1_1:15755792-15756005:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2625732421875 2 565.819473 1129.62439 0.48561 0.00027477 3.6767 0.0020803 4.1623 0.0023551 565.8201060503835 75.218 0.28148 75.264 75.127 75.409 0.045959 26 13 4 0 0 0 0.2828 1 41547 41547 15.847 5.0233 1 1723200 + 77875 26218 52105 53213 90564 90564 0.06476523117225952 YIPVPMHMY 9 Unmodified _YIPVPMHMY_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.28466796875 2 575.774831 1149.53511 0.9965 0.00057376 3.9304 0.002263 4.9269 0.0028368 575.7778351634627 59.879 1.0119 53.764 53.433 54.445 -6.1147 95 54 3 0 0 0 0.22317 1 38676 38676 20.871 0 1 109710000 77876 3595 52106 53214 90565 90565 -0.0336777115815039 YIPVQIPGYQY 11 Unmodified _YIPVQIPGYQY_ 0 0 0 nc|ENSG00000185697|P10243-2|MYBL1;ENSG00000185697|ENST00000522677|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 nc|ENSG00000185697|P10243-2|MYBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.8504028320312 2 670.847896 1339.68124 1.1053 0.00074152 2.1023 0.0014103 3.2077 0.0021519 670.850174996629 71.507 0.25619 71.546 71.386 71.642 0.039024 22 11 2 0 0 0 0.54936 1 39345 39345 13.906 3.0821 1 2850200 77877 9401 52107 53215 90566 90566 0.02498525883106595 YIQKASYL 8 Unmodified _YIQKASYL_ 0 0 0 REV__ENSG00000140527|ENST00000268130|WDR93 REV__ENSG00000140527|ENST00000268130|WDR93 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.2708129882812 2 493.271293 984.528032 NaN NaN NaN NaN NaN NaN NaN 71.233 1 70.755 70.255 71.255 -0.47735 0 0 0 0.93066 1 38984 38984 14.582 2.0501 1 + 77878 20481 52108 53216 90567 90567 0.035149555572729696 YIQKRYGGQ 9 Unmodified _YIQKRYGGQ_ 0 0 0 nc|ENSG00000154025|A0PJK1-5|SLC5A10;nc|ENSG00000154025|A0PJK1-3|SLC5A10;nc|ENSG00000154025|A0PJK1-2|SLC5A10;ENSG00000154025|ENST00000395645|SLC5A10;nc|ENSG00000154025|A0PJK1-4|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 371.5332336425781 3 371.533091 1111.57744 -0.20528 -7.627E-05 0.15674 5.8234E-05 -0.048546 -1.8036E-05 371.53313993950144 32.269 0.73003 32.298 31.887 32.617 0.029743 82 31 3 0 0 0 0.41742 1 16946 16946 7.609 2.7119 1 10974000 77879 6290 52109 53217 90568 90568 0.026116635660855536 YIQKRYGGQ 9 Unmodified _YIQKRYGGQ_ 0 0 0 nc|ENSG00000154025|A0PJK1-5|SLC5A10;nc|ENSG00000154025|A0PJK1-3|SLC5A10;nc|ENSG00000154025|A0PJK1-2|SLC5A10;ENSG00000154025|ENST00000395645|SLC5A10;nc|ENSG00000154025|A0PJK1-4|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 nc|ENSG00000154025|A0PJK1-5|SLC5A10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 371.5338745117188 3 371.533091 1111.57744 1.5406 0.00057237 0.13718 5.0966E-05 1.6777 0.00062334 371.5331702333149 36.055 0.61797 31.862 31.584 32.202 -4.1928 93 37 3 0 0 0 0.41742 1 21092 21092 7.609 0 1 28486000 77880 6290 52109 53217 90569 90569 0.026116635660855536 YIQLPVTHLF 10 Unmodified _YIQLPVTHLF_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1;nc|ENSG00000197121|Q75T13-3|PGAP1;nc|ENSG00000197121|Q75T13-4|PGAP1;ENST00000470179.5_1_2:197712669-197791463:-|nuORF ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 616.2681884765625 2 615.847699 1229.68084 0.77581 0.00047778 -1.7462 -0.0010754 -0.97041 -0.00059763 615.8455567550911 68.393 0.24448 68.418 68.318 68.562 0.025146 23 11 3 0 0 0 0.23057 1 37538 37538 13.042 2.9685 1 1583000 77881 9910 52110 53218 90570 90570 0.07519150953908138 YIQQKYLF 8 Unmodified _YIQQKYLF_ 0 0 0 REV__L1ME1_dup25854|chr15:59406488-59406754:-|1.2087316785607047|0.0627853909085158|4.27|174.0|1|1|sense REV__L1ME1_dup25854|chr15:59406488-59406754:-|1.2087316785607047|0.0627853909085158|4.27|174.0|1|1|sense MSMS AL20221201_MKP_PDAC_01 4 551.8008422851562 2 551.800217 1101.58588 NaN NaN NaN NaN NaN NaN NaN 102.62 1 96.449 95.949 96.949 -6.1757 0 0 0 0.77249 1 68862 68862 24.674 3.8027 1 + 77882 29417 52111 53219 90571 90571 0.03915217482699518 YIQRHGFAVL 10 Unmodified _YIQRHGFAVL_ 0 0 0 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 nc|ENSG00000136754|Q8IZP0-12|ABI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3367309570312 2 602.33529 1202.65603 0.58616 0.00035306 3.5287 0.0021254 4.1148 0.0024785 602.3362269340463 95.331 0.22581 89.155 89.056 89.282 -6.1757 16 12 2 0 0 0 0.46514 1 63144 63144 18.146 1.0335 1 6812400 77883 16217 52112 53220 90572 90572 0.06280515871185344 YIQRIMNL 8 Unmodified _YIQRIMNL_ 0 0 0 REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH REV__nc|ENSG00000198130|Q6NVY1-2|HIBCH MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.2438354492188 3 350.863672 1049.56919 1.7372 0.00060953 0.29113 0.00010215 2.0284 0.00071167 350.86361305957143 36.168 0.37329 31.975 31.709 32.082 -4.1928 40 22 2 0 0 0 8.7369 1 21004 21004 10.824 0.024421 1 5110800 + 77884 23993 52113 53221 90573 90573 0.04638393325103607 YIQSITSYL 9 Unmodified _YIQSITSYL_ 0 0 0 nc|ENSG00000100170|P13866-2|SLC5A1;ENSG00000100170|ENST00000266088|SLC5A1 nc|ENSG00000100170|P13866-2|SLC5A1 nc|ENSG00000100170|P13866-2|SLC5A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7382202148438 2 544.28714 1086.55973 0.20593 0.00011209 -1.0883 -0.00059234 -0.88235 -0.00048025 544.2853012859262 77.191 0.26596 77.191 77.024 77.29 0 19 13 2 0 0 0 0.21242 1 42880 42880 2.3027 0 1 360250 77885 1765 52114 53222 90574 90574 0.019909035205728287 YIRAKYVERKF 11 Unmodified _YIRAKYVERKF_ 0 0 0 ENSG00000114331|ENST00000326793|ACAP2;ENST00000475905.5_1_3:195016371-195022834:-|nuORF ENSG00000114331|ENST00000326793|ACAP2 ENSG00000114331|ENST00000326793|ACAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 736.921630859375 2 736.922261 1471.82997 0.77161 0.00056862 -0.15433 -0.00011373 0.61729 0.00045489 736.9220613587769 101.46 0.14023 95.288 95.211 95.351 -6.1757 20 6 4 0 0 0 0.70701 1 68078 68078 3.5965 0 1 103070000 77886 3030 52115 53223 90575 90575 0.11292676576613303 YIRCQKSNL 9 Unmodified _YIRCQKSNL_ 0 0 0 REV__ENSG00000064313|ENST00000378164|TAF2 REV__ENSG00000064313|ENST00000378164|TAF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7749633789062 2 562.797683 1123.58081 0.30785 0.00017326 -0.69258 -0.00038978 -0.38473 -0.00021652 563.2985462936555 37.315 0.23287 37.315 37.117 37.35 0 16 11 2 0 0 0 0.19613 1 19768 19768 12.532 0 1 1086900 + 77887 17354 52116 53224 90576 90576 0.023965903484395312 YIRDFQKISL 10 Unmodified _YIRDFQKISL_ 0 0 0 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 ENSG00000156171|ENST00000484310|DRAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.2441101074219 3 428.243317 1281.70812 0.39676 0.00016991 0.16649 7.1298E-05 0.56325 0.00024121 428.577717532041 48.529 0.3091 48.486 48.3 48.609 -0.04369 23 15 2 0 0 0 0.68074 1 26203 26203 5.0475 0 1 2089600 77888 6436 52117 53225 90577 90577 0.07853634494290418 YIRHEFKKTY 10 Unmodified _YIRHEFKKTY_ 0 0 0 REV__ENSG00000172986|ENST00000389617|GXYLT2 REV__ENSG00000172986|ENST00000389617|GXYLT2 MSMS AL20221201_MKP_PDAC_01 4 692.87158203125 2 692.872237 1383.72992 NaN NaN NaN NaN NaN NaN NaN 73.545 1 67.369 66.869 67.869 -6.1757 0 0 0 0.3465 1 48093 48093 34.402 3.1334 1 + 77889 22695 52118 53226 90578 90578 0.053404392428319625 YIRIFWTVFKI 11 Unmodified _YIRIFWTVFKI_ 0 0 0 ENSG00000094661|ENST00000641398|OR1I1 ENSG00000094661|ENST00000641398|OR1I1 ENSG00000094661|ENST00000641398|OR1I1 MSMS AL20221201_MKP_PDAC_01 4 496.2769470214844 3 495.958741 1484.85439 NaN NaN NaN NaN NaN NaN NaN 100.03 1 93.856 93.356 94.356 -6.1757 0 0 0 0.94148 1 66796 66796 1.4551 0 1 77890 1636 52119 53227 90579 90579 0.1313593673014566 YIRKHFRLH 9 Unmodified _YIRKHFRLH_ 0 0 0 ENST00000504191.1_1_6:86257184-86259466:-|nuORF ENST00000504191.1_1_6:86257184-86259466:-|nuORF ENST00000504191.1_1_6:86257184-86259466:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3701171875 2 635.369998 1268.72544 NaN NaN NaN NaN NaN NaN NaN 103.43 1 103.33 102.83 103.83 -0.10458 0 0 0 0.8622 1 56414 56414 0 0 1 77891 14488 52120 53228 90580 90580 0.10183019610599331 YIRLQRKY 8 Unmodified _YIRLQRKY_ 0 0 0 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 REV__nc|ENSG00000160746|Q9NW15-4|ANO10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.894775390625 3 380.560981 1138.66111 1.154 0.00043918 0.90003 0.00034252 2.0541 0.0007817 380.561651716147 38.951 0.271 34.5 34.361 34.632 -4.4509 33 16 3 0 0 0 0.46677 1 23053 23053 37.974 3.7523 1 16105000 + 77892 21563 52121 53229 90581 90581 0.09732819733812903 YIRMCHIDF 9 Unmodified _YIRMCHIDF_ 0 0 0 REV__ENSG00000182050|ENST00000611864|MGAT4C REV__ENSG00000182050|ENST00000611864|MGAT4C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2779541015625 2 599.280812 1196.54707 0.38476 0.00023058 -4.1815 -0.0025059 -3.7967 -0.0022753 599.2776948267781 98.979 0.17674 98.785 98.691 98.868 -0.19321 8 5 2 0 0 0 0.21242 1 54079 54079 5.2307 0.90143 1 509790 + 77893 23237 52122 53230 90582 90582 -0.043341544149825495 YIRWNKDF 8 Unmodified _YIRWNKDF_ 0 0 0 nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST nc|ENSG00000021574|Q9UBP0-4|SPAST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.292724609375 2 571.293091 1140.57163 0.83808 0.00047879 -2.8448 -0.0016252 -2.0067 -0.0011464 571.2921286797138 81.988 0.26894 81.493 81.313 81.582 -0.49521 16 9 3 0 0 0 0.80044 1 44900 44900 6.3541 0 1 328950 77894 526 52123 53231 90583 90583 0.0069656505440889305 YIRYRTTF 8 Unmodified _YIRYRTTF_ 0 0 0 REV__ENSG00000198797|ENST00000361539|BRINP2 REV__ENSG00000198797|ENST00000361539|BRINP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 560.32568359375 2 560.300916 1118.58728 0.99856 0.00055949 -1.1101 -0.000622 -0.11156 -6.2506E-05 560.3003053825414 91.318 0.41809 85.142 84.894 85.312 -6.1757 26 23 2 0 0 0 8.7369 1 60364 60364 15.847 5.0233 1 5380400 + 77895 24062 52124 53232 90584 90584 0.032728515714552486 YISDMCGRF 9 Unmodified _YISDMCGRF_ 0 0 0 REV__ENSG00000083857|ENST00000441802|FAT1 REV__ENSG00000083857|ENST00000441802|FAT1 MSMS AL20221201_MKP_PDAC_01 4 546.2361450195312 2 546.23607 1090.45759 NaN NaN NaN NaN NaN NaN NaN 92.543 1 86.368 85.868 86.868 -6.1757 0 0 0 0.7243 1 61204 61204 8.5933 0 1 + 77896 17726 52125 53233 90585 90585 -0.08402409094333052 YISDVKLLY 9 Unmodified _YISDVKLLY_ 0 0 0 ENSG00000143278|ENST00000367412|F13B ENSG00000143278|ENST00000367412|F13B ENSG00000143278|ENST00000367412|F13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3128662109375 2 557.313158 1112.61176 1.5177 0.00084582 0.55717 0.00031052 2.0748 0.0011563 557.3134700565769 95.788 0.1795 89.612 89.481 89.66 -6.1757 19 11 2 0 0 0 0.047196 1 63445 63445 46.021 15.796 1 12406000 77897 5485 52126 53234 90586 90586 0.059960669343581685 YISEHEHF 8 Unmodified _YISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2374267578125 2 531.237981 1060.46141 -1.0413 -0.00055319 -0.51189 -0.00027194 -1.5532 -0.00082512 531.2376453647989 32.427 0.37997 32.427 32.278 32.658 0 69 22 4 0 0 0 0.069468 2 16906 16906;17011 123.1 94.923 1 265120000 77898 2242 52127 53235 90587;90588 90587 -0.0664028000462622 YISEHEHF 8 Unmodified _YISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2386474609375 2 531.237981 1060.46141 -0.24282 -0.000129 0.0067152 3.5674E-06 -0.23611 -0.00012543 531.2379780713004 32.5 0.26 32.371 32.245 32.505 -0.12915 34 11 4 0 0 0 0.07972 1 16897 16897 106.85 74.729 1 9713700 77899 2242 52127 53235 90589 90589 -0.0664028000462622 YISEHEHF 8 Unmodified _YISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.2384033203125 2 531.237981 1060.46141 -0.13157 -6.9896E-05 -0.49851 -0.00026483 -0.63008 -0.00033472 531.2378938967502 32.361 0.18741 32.391 32.279 32.466 0.029747 18 7 3 0 0 0 0.1036 1 16976 16976 98.807 68.582 1 2965500 77900 2242 52127 53235 90590 90590 -0.0664028000462622 YISEHEHF 8 Unmodified _YISEHEHF_ 0 0 0 ENSG00000104853|ENST00000337392|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;nc|ENSG00000104853|O96005-3|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 ENSG00000104853|ENST00000337392|CLPTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.238525390625 2 531.237981 1060.46141 0.43143 0.00022919 -0.31227 -0.00016589 0.11916 6.3301E-05 531.2377524391794 36.366 0.60039 32.174 31.962 32.562 -4.1928 115 36 4 0 0 0 0.069468 3 21390 21142;21266;21390 123.1 86.771 1 477570000 77901 2242 52127 53235 90591;90592;90593 90593 -0.0664028000462622 YISEVKEVL 9 Unmodified _YISEVKEVL_ 0 0 0 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 ENSG00000117505|ENST00000370272|DR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.8084716796875 2 540.30279 1078.59103 0.31178 0.00016846 2.5218 0.0013625 2.8336 0.001531 540.3031922553624 60.337 0.6302 60.294 59.846 60.476 -0.043507 74 32 3 0 0 0 0.37804 1 32811 32811 13.508 0 1 38079000 77902 3313 52128 53236 90594 90594 0.05487476554662862 YISEYMQSD 9 Unmodified _YISEYMQSD_ 0 0 0 ENSG00000065618|ENST00000648076|COL17A1;nc|ENSG00000065618|Q9UMD9-2|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 ENSG00000065618|ENST00000648076|COL17A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.1594543457031 3 379.15859 1134.45394 0.4123 0.00015633 0.35143 0.00013325 0.76373 0.00028957 379.15878045609776 93.134 0.16833 92.677 92.56 92.728 -0.4574 10 8 2 0 0 0 0.61256 1 50910 50910 0.26902 0 1 202160 77903 912 52129 53237 90595 90595 -0.10790800387189847 YISGEFYV 8 Unmodified _YISGEFYV_ 0 0 0 REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2 MSMS AL20221201_MKP_PDAC_01 4 489.2333984375 2 489.234376 976.454199 NaN NaN NaN NaN NaN NaN NaN 93.25 1 87.074 86.574 87.574 -6.1757 0 0 0 0.63034 1 61710 61710 32.117 3.6301 1 + 77904 19743 52130 53238 90596 90596 -0.034970126050325234 YISHHWPF 8 Unmodified _YISHHWPF_ 0 0 0 ENSG00000078589|ENST00000171757|P2RY10 ENSG00000078589|ENST00000171757|P2RY10 ENSG00000078589|ENST00000171757|P2RY10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.76171875 2 543.761426 1085.5083 0.21096 0.00011471 0.30672 0.00016678 0.51767 0.00028149 543.7622759904257 81.091 0.23553 81.091 81.024 81.259 0 16 11 2 0 0 0 0.80975 1 45095 45095 0.79363 0 1 423660 77905 1246 52131 53239 90597 90597 -0.03103375662817598 YISHIHTNI 9 Unmodified _YISHIHTNI_ 0 0 0 ENST00000370651.5_1_6:64290538-64290784:+|nuORF ENST00000370651.5_1_6:64290538-64290784:+|nuORF ENST00000370651.5_1_6:64290538-64290784:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 549.2921142578125 2 549.290548 1096.56654 NaN NaN NaN NaN NaN NaN NaN 82.712 1 76.536 76.036 77.036 -6.1757 0 0 0 0.33856 1 54348 54348 23.148 3.8914 1 77906 12340 52132 53240 90598 90598 0.022122611917893664 YISMAFFF 8 Unmodified _YISMAFFF_ 0 0 0 nc|ENSG00000148358|Q5VW38-3|GPR107;ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107 nc|ENSG00000148358|Q5VW38-3|GPR107 nc|ENSG00000148358|Q5VW38-3|GPR107 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.2430419921875 2 513.243689 1024.47283 NaN NaN NaN NaN NaN NaN NaN 58.759 1 58.759 58.259 59.259 0 0 0 0 0.97348 1 32719 32719 5.7604 0 1 77907 5926 52133 53241 90599 90599 -0.03843174234839353 YISQYYNGPS 10 Unmodified _YISQYYNGPS_ 0 0 0 ENSG00000169758|ENST00000388942|TMEM266;nc|ENSG00000169758|Q2M3C6-2|TMEM266;ENST00000561302.5_1_15:76430142-76521275:+|nuORF ENSG00000169758|ENST00000388942|TMEM266 ENSG00000169758|ENST00000388942|TMEM266 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.2765502929688 2 596.269478 1190.5244 0.3945 0.00023523 1.8276 0.0010897 2.2221 0.001325 596.7709075981888 100.69 0.11151 94.517 94.472 94.584 -6.1757 9 7 2 0 0 0 0.20412 1 67360 67360 29.082 2.1979 1 12998000 77908 7912 52134 53242 90600 90600 -0.06323759007227636 YISREFHRRYR 11 Unmodified _YISREFHRRYR_ 0 0 0 ENSG00000160202|ENST00000291554|CRYAA ENSG00000160202|ENST00000291554|CRYAA ENSG00000160202|ENST00000291554|CRYAA MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.6199340820312 3 528.283169 1581.82768 1.2067 0.00063749 3.2999 0.0017433 4.5066 0.0023808 528.6202530633207 89.369 0.39208 83.193 82.935 83.327 -6.1757 44 21 3 0 0 0 0.71938 1 59012 59012 2.4348 0.18206 1 15535000 77909 6698 52135 53243 90601 90601 0.060036408915493666 YISRHVKKE 9 Unmodified _YISRHVKKE_ 0 0 0 ENSG00000147432|ENST00000289957|CHRNB3 ENSG00000147432|ENST00000289957|CHRNB3 ENSG00000147432|ENST00000289957|CHRNB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2243347167969 3 387.224257 1158.65094 1.5684 0.00060731 -0.54043 -0.00020927 1.0279 0.00039804 387.22389619726187 21.225 0.36099 18.532 18.321 18.682 -2.693 60 23 4 0 0 0 0.32871 1 11370 11370 10.8 3.1906 1 49580000 77910 5849 52136 53244 90602 90602 0.07796212008565817 YISRYLTDF 9 Unmodified _YISRYLTDF_ 0 0 0 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2985229492188 2 589.298039 1176.58152 0.55799 0.00032882 -0.58131 -0.00034257 -0.023324 -1.3745E-05 589.2977025454245 72.17 0.52117 71.694 71.499 72.02 -0.47609 40 23 3 0 0 0 0.23158 1 39500 39500 20.454 5.6154 1 2053900 77911 8180 52137 53245 90603 90603 0.00029708269130424014 YISRYLTDF 9 Unmodified _YISRYLTDF_ 0 0 0 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 ENSG00000172071|ENST00000303236|EIF2AK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2997436523438 2 589.298039 1176.58152 0.76012 0.00044794 0.56127 0.00033076 1.3214 0.00077869 589.2984412564601 71.605 0.48477 71.644 71.49 71.974 0.039032 33 22 2 0 0 0 0.10734 1 39433 39433 32.305 5.4218 1 3090100 77912 8180 52137 53245 90604 90604 0.00029708269130424014 YISSEAHYNK 10 Unmodified _YISSEAHYNK_ 0 0 0 nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3 nc|ENSG00000119684|Q9UHC1-2|MLH3 nc|ENSG00000119684|Q9UHC1-2|MLH3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.3164672851562 2 606.288202 1210.56185 0.41114 0.00024927 2.0954 0.0012704 2.5065 0.0015197 606.2890519150478 101.6 0.19111 95.427 95.291 95.483 -6.1757 13 9 2 0 0 0 0.35903 1 68164 68164 24.021 3.5669 1 20830000 77913 3454 52138 53246 90605 90605 -0.03500667741627694 YISSVDHVCI 10 Unmodified _YISSVDHVCI_ 0 0 0 REV__nc|ENSG00000171793|P17812-2|CTPS1 REV__nc|ENSG00000171793|P17812-2|CTPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.779296875 2 568.276249 1134.53795 0.38832 0.00022067 -0.53019 -0.00030129 -0.14187 -8.0621E-05 568.2760368543782 39.466 0.27449 39.466 39.341 39.616 0 28 12 3 0 0 0 0.62068 1 21204 21204 10.074 0.72649 1 6936800 + 77914 22600 52139 53247 90606 90606 -0.02394224499653319 YITALLKDGF 10 Unmodified _YITALLKDGF_ 0 0 0 ENSG00000187097|ENST00000334696|ENTPD5 ENSG00000187097|ENST00000334696|ENTPD5 ENSG00000187097|ENST00000334696|ENTPD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.8824768066406 3 380.881497 1139.62266 NaN NaN NaN NaN NaN NaN NaN 26.998 1 26.966 26.466 27.466 -0.031708 0 0 0 0.48009 1 13901 13901 27.223 4.4483 1 77915 9537 52140 53248 90607 90607 0.058434693086155676 YITIIPMLN 9 Unmodified _YITIIPMLN_ 0 0 0 ENSG00000279116|ENST00000624618|OR8D2 ENSG00000279116|ENST00000624618|OR8D2 ENSG00000279116|ENST00000624618|OR8D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.3031616210938 2 539.304278 1076.594 0.38339 0.00020676 -2.0623 -0.0011122 -1.6789 -0.00090544 539.3024525166203 83.316 0.34918 82.819 82.613 82.962 -0.49751 20 13 2 0 0 0 0.41742 1 45620 45620 11.64 2.2929 1 719150 77916 10941 52141 53249 90608 90608 0.05877028407826401 YITIIPMLN 9 Unmodified _YITIIPMLN_ 0 0 0 ENSG00000279116|ENST00000624618|OR8D2 ENSG00000279116|ENST00000624618|OR8D2 ENSG00000279116|ENST00000624618|OR8D2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.304278 1076.594 1.0446 0.00056335 -3.3661 -0.0018154 -2.3216 -0.001252 539.3029245460307 82.62 0.33933 82.682 82.529 82.869 0.062004 -0.068609 -0.00099852 NaN 11.64 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2052300 77917 10941 52141 53249 0.05877028407826401 YITLSFLL 8 Unmodified _YITLSFLL_ 0 0 0 REV__ENST00000535924.6_1_1:85787008-85787086:-|nuORF REV__ENST00000535924.6_1_1:85787008-85787086:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.2880554199219 2 485.286411 968.55827 1.2701 0.00061637 0.47524 0.00023063 1.7454 0.000847 485.28713146047664 101.13 0.10159 94.95 94.889 94.99 -6.1757 13 5 3 0 0 0 0.48233 1 67815 67815 36.466 0 1 26739000 + 77918 28533 52142 53250 90609 90609 0.07273314222470617 YITSKQWDSM 10 Unmodified _YITSKQWDSM_ 0 0 0 REV__nc|ENSG00000198373|O00308-3|WWP2 REV__nc|ENSG00000198373|O00308-3|WWP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 420.2529602050781 3 420.197268 1257.56997 0.403 0.00016934 -2.6098 -0.0010966 -2.2068 -0.00092728 420.19626899575485 67.229 0.12682 66.747 66.675 66.802 -0.48218 7 5 2 0 0 0 0.23986 1 36731 36731 2.086 0.34373 1 610120 + 77919 24014 52143 53251 90610 90610 -0.04850856816506166 YITVEEIIY 9 Unmodified _YITVEEIIY_ 0 0 0 ENST00000527503.1_1_11:92881705-92887463:-|nuORF;nc|ENSG00000180773|Q6YBV0-2|SLC36A4;ENSG00000180773|ENST00000326402|SLC36A4 ENST00000527503.1_1_11:92881705-92887463:-|nuORF ENST00000527503.1_1_11:92881705-92887463:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8023071289062 2 571.802623 1141.59069 1.3884 0.00079391 -0.25839 -0.00014775 1.13 0.00064616 571.8019228409726 100.05 0.12025 93.879 93.804 93.924 -6.1757 11 7 2 0 0 0 0.078417 1 66845 66845 38.151 0 1 16699000 77920 8921 52144 53252 90611 90611 0.025560568348055313 YITVEEIIY 9 Unmodified _YITVEEIIY_ 0 0 0 ENST00000527503.1_1_11:92881705-92887463:-|nuORF;nc|ENSG00000180773|Q6YBV0-2|SLC36A4;ENSG00000180773|ENST00000326402|SLC36A4 ENST00000527503.1_1_11:92881705-92887463:-|nuORF ENST00000527503.1_1_11:92881705-92887463:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 571.802623 1141.59069 0.55571 0.00031776 0.93672 0.00053562 1.4924 0.00085338 571.8037517436536 94.436 0.11589 94.016 93.952 94.068 -0.42044 0.068318 0.00084337 NaN 38.151 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 197320 77921 8921 52144 53252 0.025560568348055313 YITWTYFFR 9 Unmodified _YITWTYFFR_ 0 0 0 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 ENSG00000112249|ENST00000369162|ASCC3 MSMS AL20221201_MKP_PDAC_01 4 432.8854064941406 3 432.885241 1295.63389 NaN NaN NaN NaN NaN NaN NaN 26.614 1 23.663 23.163 24.163 -2.9511 0 0 0 0.84211 1 14685 14685 2.4985 0.59211 1 77922 2874 52145 53253 90612 90612 -0.0020970859727640345 YITYWKEYI 9 Unmodified _YITYWKEYI_ 0 0 0 ENST00000480590.1_1_1:227921003-227922761:-|nuORF;nc|ENSG00000081692|Q9H9V9-2|JMJD4;ENSG00000081692|ENST00000620518|JMJD4;nc|ENSG00000081692|Q9H9V9-1|JMJD4 ENST00000480590.1_1_1:227921003-227922761:-|nuORF ENST00000480590.1_1_1:227921003-227922761:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.821533203125 2 639.823889 1277.63323 0.018826 1.2045E-05 -2.0213 -0.0012933 -2.0025 -0.0012812 639.8224079355757 88.8 0.25822 88.8 88.662 88.92 0 25 16 2 0 0 0 0.58466 1 49132 49132 2.3027 0 1 694470 77923 1327 52146 53254 90613 90613 0.0055145196306511934 YIVAGLEK 8 Unmodified _YIVAGLEK_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.759765625 2 446.760561 891.506569 0.66037 0.00029503 0.14465 6.4625E-05 0.80502 0.00035965 446.76047302684236 38.555 0.29955 38.555 38.426 38.725 0 36 14 3 0 0 0 0.58902 1 20587 20587 26.884 0.54238 1 12672000 + 77924 22116 52147 53255 90614 90614 0.05647570528560664 YIVAGLEK 8 Unmodified _YIVAGLEK_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 446.760561 891.506569 0.66037 0.00029503 0.14465 6.4625E-05 0.80502 0.00035965 446.76047302684236 38.555 0.29955 38.555 38.426 38.725 0 0.00081385 8.1543E-05 NaN 26.884 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 12672000 + 77925 22116 52147 53255 0.05647570528560664 YIVAGLEK 8 Unmodified _YIVAGLEK_ 0 0 0 REV__ENSG00000166428|ENST00000392593|PLD4 REV__ENSG00000166428|ENST00000392593|PLD4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 446.760561 891.506569 -0.070183 -3.1355E-05 -0.27166 -0.00012137 -0.34185 -0.00015272 446.7601420229789 38.841 0.19458 38.554 38.435 38.63 -0.28687 -0.00081385 -0.00029044 NaN 26.884 18 8 3 NaN NaN NaN NaN 0 NaN NaN 0 2052200 + 77926 22116 52147 53255 0.05647570528560664 YIVDGKIII 9 Unmodified _YIVDGKIII_ 0 0 0 ENSG00000183668|ENST00000270077|PSG9;nc|ENSG00000183668|Q00887-2|PSG9 ENSG00000183668|ENST00000270077|PSG9;nc|ENSG00000183668|Q00887-2|PSG9 nc|ENSG00000183668|Q00887-2|PSG9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.3184204101562 2 517.318243 1032.62193 0.50188 0.00025963 -0.40874 -0.00021145 0.093131 4.8179E-05 517.3179951032507 82.711 0.68298 82.214 81.765 82.448 -0.49751 64 28 4 0 0 0 0.1773 1 45337 45337 25.399 3.6527 1 8498300 77927 9175;16449 52148 53256 90615 90615 0.10692674659571821 YIVDLNRYLDD 11 Unmodified _YIVDLNRYLDD_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 699.8497924804688 2 699.848624 1397.6827 0.51785 0.00036242 0.20594 0.00014413 0.7238 0.00050655 699.8486920892717 59.207 0.28475 59.154 58.908 59.193 -0.053062 21 13 2 0 0 0 0.28167 1 32276 32276 18.373 0 1 1894300 77928 7273 52149 53257 90616 90616 -0.00023884818801889196 YIVDLNRYLDD 11 Unmodified _YIVDLNRYLDD_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 699.848624 1397.6827 0.22346 0.00015639 0.30963 0.00021669 0.53309 0.00037308 699.8488018606196 59.545 0.87124 59.054 58.579 59.45 -0.49079 -0.049742 2.0466E-05 NaN 18.373 101 41 3 NaN NaN NaN NaN 0 NaN NaN 0 3786200 77929 7273 52149 53257 -0.00023884818801889196 YIVDRVNKD 9 Unmodified _YIVDRVNKD_ 0 0 0 REV__ENST00000520757.1_1_8:96047742-96087920:+|nuORF REV__ENST00000520757.1_1_8:96047742-96087920:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.2976684570312 2 561.301113 1120.58767 0.66718 0.00037449 1.6741 0.0009397 2.3413 0.0013142 561.3012246647862 52.075 0.66497 51.641 51.4 52.064 -0.43367 69 33 3 0 0 0 0.2143 1 28103 28103 21.747 3.6003 1 11263000 + 77930 21317 52150 53258 90617 90617 0.032202265006844755 YIVGTSEDRKE 11 Unmodified _YIVGTSEDRKE_ 0 0 0 REV__ENST00000515475.1_1_5:145199495-145214847:-|nuORF REV__ENST00000515475.1_1_5:145199495-145214847:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8852844238281 3 432.885858 1295.63574 NaN NaN NaN NaN NaN NaN NaN 75.698 1 75.746 75.246 76.246 0.047943 0 0 0 0.9428 1 41749 41749 0.50596 0.051438 1 + 77931 23567 52151 53259 90618 90618 -0.0002474436994361895 YIVGWRTGLCE 11 Unmodified _YIVGWRTGLCE_ 0 0 0 nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 nc|ENSG00000205592|Q7Z5P9-2|MUC19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8856506347656 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 47.371 1 47.019 46.519 47.519 -0.3526 0 0 0 0.9435 1 25393 25393 0 0 1 77932 10372 52152 53260 90619 90619 -0.002748713085793497 YIVIFYLF 8 Unmodified _YIVIFYLF_ 0 0 0 REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF REV__ENST00000305366.7_1_3:149087371-149087659:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.30517578125 2 539.304604 1076.59466 0.64332 0.00034695 2.4641 0.0013289 3.1074 0.0016758 539.30615387578 93.74 0.29947 87.564 87.348 87.647 -6.1757 22 17 2 0 0 0 0.75262 1 62049 62049 17.087 0 1 6385700 + 77933 25365 52153 53261 90620 90620 0.05942191119174822 YIVIVVLSNGF 11 Unmodified _YIVIVVLSNGF_ 0 0 0 REV__ENSG00000144891|ENST00000349243|AGTR1 REV__ENSG00000144891|ENST00000349243|AGTR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.8078002929688 2 612.355357 1222.69616 0.58513 0.0003583 -1.6561 -0.0010141 -1.071 -0.00065581 612.3541102970835 78.288 0.16343 78.34 78.302 78.466 0.052452 9 6 2 0 0 0 0.29947 1 43289 43289 3.5965 0 1 1435900 + 77934 20745 52154 53262 90621 90621 0.09372017751093153 YIVYLSDVF 9 Unmodified _YIVYLSDVF_ 0 0 0 ENST00000356577.8_2_21:34948883-34949093:+|nuORF ENST00000356577.8_2_21:34948883-34949093:+|nuORF ENST00000356577.8_2_21:34948883-34949093:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 559.795654296875 2 559.792058 1117.56956 NaN NaN NaN NaN NaN NaN NaN 93.685 1 87.509 87.009 88.009 -6.1757 0 0 0 0.6032 1 62024 62024 12.532 0 1 77935 12092 52155 53263 90622 90622 0.01548091525955897 YIWILNKVI 9 Unmodified _YIWILNKVI_ 0 0 0 REV__ENST00000567239.5_1_16:69681305-69687170:+|nuORF REV__ENST00000567239.5_1_16:69681305-69687170:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.3125 2 581.35516 1160.69577 NaN NaN NaN NaN NaN NaN NaN 100.89 1 100.84 100.34 101.34 -0.04216 0 0 0 0.84369 1 56044 56044 2.3027 0 1 + 77936 28927 52156 53264 90623 90623 0.12184642821898706 YIWRDQQTLA 10 Unmodified _YIWRDQQTLA_ 0 0 0 REV__ENSG00000134569|ENST00000378623|LRP4 REV__ENSG00000134569|ENST00000378623|LRP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 431.8921813964844 3 431.891055 1292.65134 NaN NaN NaN NaN NaN NaN NaN 20.033 1 20.04 19.54 20.54 0.0078487 0 0 0 1.0029 1 10207 10207 0.12286 0 1 + 77937 19993 52157 53265 90624 90624 0.01671586937777647 YIWRLMTMTV 10 Unmodified _YIWRLMTMTV_ 0 0 0 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF;REV__ENSG00000185722|ENST00000341657|ANKFY1 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 657.3422241210938 2 657.340869 1312.66719 -0.24679 -0.00016223 2.4735 0.0016259 2.2267 0.0014637 657.3424162201813 101.58 0.085739 101.53 101.49 101.58 -0.045853 4 2 2 0 0 0 0.71123 1 56452 56452 1.6526 0 1 44844000 + 77938 29021;23521 52158 53266 90625 90625 0.023358338587740946 YIWRLMTMTV 10 Unmodified _YIWRLMTMTV_ 0 0 0 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF;REV__ENSG00000185722|ENST00000341657|ANKFY1 REV__ENST00000575955.1_1_17:4120189-4167236:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 657.340869 1312.66719 -0.24679 -0.00016223 2.4735 0.0016259 2.2267 0.0014637 657.3424162201813 101.58 0.085739 101.53 101.49 101.58 -0.045853 0 0 NaN 1.6526 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 44844000 + 77939 29021;23521 52158 53266 0.023358338587740946 YIWSKADLKL 10 Unmodified _YIWSKADLKL_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2394409179688 3 412.904413 1235.69141 0.11346 4.6848E-05 0.11766 4.8581E-05 0.23112 9.5429E-05 412.90436882209315 59.612 0.25591 59.558 59.399 59.655 -0.053062 26 12 3 0 0 0 0.40046 1 32492 32492 19.144 15.551 1 6758300 77940 4592 52159 53267 90626 90626 0.08299133608329612 YIWSKADLKL 10 Unmodified _YIWSKADLKL_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MSMS AL20221201_MKP_PDAC_01 4 412.9051818847656 3 412.904413 1235.69141 NaN NaN NaN NaN NaN NaN NaN 82.803 1 76.627 76.127 77.127 -6.1757 0 0 0 0.55063 1 54413 54413 16.275 4.0998 1 77941 4592 52159 53267 90627 90627 0.08299133608329612 YIWSKADLKL 10 Unmodified _YIWSKADLKL_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 ENSG00000134321|ENST00000382040|RSAD2 MSMS AL20221201_MKP_PDAC_01 4 412.9049377441406 3 412.904413 1235.69141 NaN NaN NaN NaN NaN NaN NaN 82.99 1 76.814 76.314 77.314 -6.1757 0 0 0 0.66191 1 54545 54545 12.228 8.9079 1 77942 4592 52159 53267 90628 90628 0.08299133608329612 YIWVRWYSHWW 11 Unmodified _YIWVRWYSHWW_ 0 0 0 REV__ENST00000295992.7_1_3:142606565-142606607:-|nuORF REV__ENST00000295992.7_1_3:142606565-142606607:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.3048706054688 3 561.273611 1680.799 1.4544 0.00081632 3.7175 0.0020865 5.1719 0.0029028 561.2768344921981 50.502 0.16182 50.451 50.371 50.533 -0.051182 13 7 2 0 0 0 0.30604 1 27278 27278 0.094841 0 1 567280 + 77943 25267 52160 53268 90629 90629 -0.01416476737585981 YIWYKAYV 8 Unmodified _YIWYKAYV_ 0 0 0 REV__ENSG00000103335|ENST00000301015|PIEZO1 REV__ENSG00000103335|ENST00000301015|PIEZO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 369.19580078125 3 369.195416 1104.56442 -0.26824 -9.9032E-05 0.78906 0.00029132 0.52083 0.00019229 369.1956809482353 34.022 0.42289 33.831 33.521 33.944 -0.19131 21 16 2 0 0 0 0.80676 1 17792 17792 1.6526 0.17072 1 1265600 + 77944 18302 52161 53269 90630 90630 0.016318324539724927 YIYCRVWF 8 Unmodified _YIYCRVWF_ 0 0 0 ENST00000533812.6_1_11:130716031-130716900:-|nuORF ENST00000533812.6_1_11:130716031-130716900:-|nuORF ENST00000533812.6_1_11:130716031-130716900:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.7847290039062 2 575.281137 1148.54772 0.55899 0.00032157 -2.9908 -0.0017206 -2.4319 -0.001399 575.2783320202174 67.275 0.10651 66.792 66.716 66.822 -0.48218 7 4 2 0 0 0 0.77907 1 36749 36749 10.183 0.10947 1 1219100 77945 14942 52162 53270 90631 90631 -0.020609917036154002 YIYDGYSEES 10 Unmodified _YIYDGYSEES_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.1679992675781 3 409.168031 1224.48226 0.54725 0.00022392 -0.89142 -0.00036474 -0.34417 -0.00014082 409.16768766318944 52.14 0.23949 51.706 51.59 51.83 -0.43367 22 11 3 0 0 0 0.70951 1 28169 28169 0.77653 0 1 1724800 + 77946 29707;21097 52163 53271 90632 90632 -0.12099779206255334 YIYEYLYLY 9 Unmodified _YIYEYLYLY_ 0 0 0 ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF ENST00000515408.5_1_5:112353398-112353584:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8838195800781 3 434.881274 1301.62199 NaN NaN NaN NaN NaN NaN NaN 99.926 1 99.89 99.39 100.39 -0.036301 0 0 0 0.85737 1 55504 55504 0.26902 0 1 77947 14667 52164 53272 90633 90633 -0.016753701310790348 YIYGLLGE 8 Unmodified _YIYGLLGE_ 0 0 0 REV__ENSG00000027001|ENST00000382172|MIPEP REV__ENSG00000027001|ENST00000382172|MIPEP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.2460021972656 2 464.244744 926.474934 NaN NaN NaN NaN NaN NaN NaN 29.129 1 29.159 28.659 29.659 0.030106 0 0 0 0.97348 1 15187 15187 5.7604 0 1 + 77948 17131 52165 53273 90634 90634 0.008755777746387139 YIYHGTVKL 9 Unmodified _YIYHGTVKL_ 0 0 0 nc|ENSG00000123444|Q9NVX7-1|KBTBD4;ENSG00000123444|ENST00000430070|KBTBD4;nc|ENSG00000123444|Q9NVX7-3|KBTBD4 nc|ENSG00000123444|Q9NVX7-1|KBTBD4 nc|ENSG00000123444|Q9NVX7-1|KBTBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2062377929688 3 365.206203 1092.59678 1.752 0.00063984 -0.71227 -0.00026013 1.0397 0.00037971 365.20595211363457 41.969 0.34385 37.285 37.097 37.44 -4.6846 38 21 2 0 0 0 0.19127 1 25276 25276 28.495 10.348 1 18744000 77949 3710 52166 53274 90635 90635 0.05418619857005069 YIYINGTI 8 Unmodified _YIYINGTI_ 0 0 0 REV__nc|ENSG00000111321|P36941-2|LTBR REV__nc|ENSG00000111321|P36941-2|LTBR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7573547363281 2 478.758018 955.501483 NaN NaN NaN NaN NaN NaN NaN 66.156 1 66.156 65.656 66.656 0 0 0 0 0.9249 1 36902 36902 15.768 0 1 + 77950 29568 52167 53275 90636 90636 0.02195266665944473 YIYLCLLLL 9 Unmodified _YIYLCLLLL_ 0 0 0 REV__nc|ENSG00000141338|O94911-1|ABCA8 REV__nc|ENSG00000141338|O94911-1|ABCA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2257080078125 3 376.224207 1125.65079 1.1168 0.00042016 2.0756 0.00078088 3.1923 0.001201 376.2251948331662 49.883 0.28305 49.834 49.683 49.967 -0.048824 28 13 3 0 0 0 0.25681 1 26967 26967 19.257 5.3509 1 3898400 + 77951 20528 52168 53276 90637 90637 0.09299075964349868 YIYLEQWFSVE 11 Unmodified _YIYLEQWFSVE_ 0 0 0 ENST00000495893.6_1_3:169814241-169814379:-|nuORF ENST00000495893.6_1_3:169814241-169814379:-|nuORF ENST00000495893.6_1_3:169814241-169814379:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 738.8583374023438 2 738.855918 1475.69728 NaN NaN NaN NaN NaN NaN NaN 74.21 1 74.21 73.71 74.71 0 0 0 0 0.9428 1 41299 41299 1.4819 1.1313 1 77952 14361 52169 53277 90638 90638 -0.02153812670667321 YIYLEQWFSVE 11 Unmodified _YIYLEQWFSVE_ 0 0 0 ENST00000495893.6_1_3:169814241-169814379:-|nuORF ENST00000495893.6_1_3:169814241-169814379:-|nuORF ENST00000495893.6_1_3:169814241-169814379:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 738.8568115234375 2 738.855918 1475.69728 NaN NaN NaN NaN NaN NaN NaN 81.152 1 81.152 80.652 81.652 0 0 0 0 0.9428 1 45047 45047 0.35063 0 1 77953 14361 52169 53277 90639 90639 -0.02153812670667321 YIYRAQSSF 9 Unmodified _YIYRAQSSF_ 0 0 0 nc|ENSG00000147036|Q6ZV70-2|LANCL3 nc|ENSG00000147036|Q6ZV70-2|LANCL3 nc|ENSG00000147036|Q6ZV70-2|LANCL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2837524414062 2 567.782556 1133.55056 0.76482 0.00043425 1.8364 0.0010427 2.6012 0.0014769 567.784940234082 82.619 1.8045 76.444 75.637 77.442 -6.1757 229 99 3 0 0 0 0.23158 2 54720 54273;54720 20.454 0 1 40995000 77954 16256 52170 53278 90640;90641 90641 -0.01087445045095592 YIYWTEWGGK 10 Unmodified _YIYWTEWGGK_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;ENST00000528714.1_1_11:68177519-68180434:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.810791015625 2 651.811313 1301.60807 1.6458 0.0010727 -0.72784 -0.00047442 0.91793 0.00059832 651.8105911991536 82.355 0.28477 82.417 82.244 82.529 0.062004 24 10 3 0 0 0 0.6966 1 45593 45593 3.2813 0 1 5273300 77955 16693 52171 53279 90642 90642 -0.0306660283954443 YIYWTEWGGK 10 Unmodified _YIYWTEWGGK_ 0 0 0 PPP6R3-LRP5|3|fusion;PPP6R3-LRP5|1|fusion;PPP6R3-LRP5|4|fusion;PPP6R3-LRP5|2|fusion;PPP6R3-LRP5|6|fusion;PPP6R3-LRP5|5|fusion;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;ENST00000528714.1_1_11:68177519-68180434:+|nuORF PPP6R3-LRP5|3|fusion PPP6R3-LRP5|3|fusion MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 651.811313 1301.60807 1.6458 0.0010727 -0.72784 -0.00047442 0.91793 0.00059832 651.8105911991536 82.355 0.28477 82.417 82.244 82.529 0.062004 0 0 NaN 3.2813 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5273300 77956 16693 52171 53279 -0.0306660283954443 YKADKPMGDNE 11 Unmodified _YKADKPMGDNE_ 0 0 0 REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF REV__ENST00000512095.5_1_4:39217537-39276579:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.1916198730469 3 423.192294 1266.55505 -0.61542 -0.00026044 0.75127 0.00031793 0.13586 5.7493E-05 423.1924347265743 27.014 0.16534 27.014 26.909 27.075 0 12 7 2 0 0 0 0.73114 1 13903 13903 1.3296 0.1363 1 1988500 + 77957 21400 52172 53280 90643 90643 -0.06756348684484692 YKAEAMLE 8 Unmodified _YKAEAMLE_ 0 0 0 REV__ENSG00000109079|ENST00000226225|TNFAIP1 REV__ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.455078125 1 954.460095 953.452819 -1.0373 -0.0009901 -3.1375 -0.0029946 -4.1749 -0.0039847 954.4571276966698 55.562 0.13562 55.562 55.437 55.573 0 9 5 2 0 0 0 0.50673 1 30835 30835 34.102 0 1 809290 + 77958 18642 52173 53281 90644 90644 -0.02576969965468834 YKANKLLAL 9 Unmodified _YKANKLLAL_ 0 0 0 REV__ENSG00000179046|ENST00000682553|TRIML2 REV__ENSG00000179046|ENST00000682553|TRIML2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.326416015625 2 517.32386 1032.63317 0.94544 0.0004891 1.2378 0.00064032 2.1832 0.0011294 517.3252067154818 68.725 0.68721 62.549 62.275 62.962 -6.1757 79 38 3 0 0 0 0.2143 1 44804 44804 21.747 2.4897 1 86180000 + 77959 23081 52174 53282 90645 90645 0.11815496753706611 YKARPCKK 8 Unmodified _YKARPCKK_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2878723144531 2 497.286754 992.558955 1.6482 0.00081965 1.2183 0.00060584 2.8665 0.0014255 497.28716757143974 105.23 0.11862 99.056 98.989 99.108 -6.1757 53 29 2 0 0 0 0.80722 1 70498 70498 2.3027 1.6124 1 124460000 77960 7792 52175 53283 90646 90646 0.062378303905234134 YKCSECGKFY 10 Unmodified _YKCSECGKFY_ 0 0 0 ENST00000523439.1_1_19:58003464-58005455:+|nuORF;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419;nc|ENSG00000152439|Q6PK81-2|ZNF773;ENSG00000152439|ENST00000282292|ZNF773 ENST00000523439.1_1_19:58003464-58005455:+|nuORF ENST00000523439.1_1_19:58003464-58005455:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2618408203125 2 614.262284 1226.51002 0.59955 0.00036828 -0.54008 -0.00033175 0.059465 3.6527E-05 614.2621287168892 72.954 0.39127 72.954 72.734 73.126 0 42 18 3 0 0 0 0.69917 1 40537 40537 2.9952 0.41776 1 1232900 77961 2279 52176 53284 90647 90647 -0.0941787075139473 YKDESETET 9 Unmodified _YKDESETET_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2578125 2 551.232758 1100.45096 -0.36273 -0.00019995 0.722 0.00039799 0.35927 0.00019804 551.2332434599042 33.12 0.39177 33.12 32.831 33.223 0 26 19 2 0 0 0 0.21302 1 17297 17297 5.7319 1.4026 1 1957800 + 77962 19938 52177 53285 90648 90648 -0.09524352240350709 YKDIFPDLF 9 Unmodified _YKDIFPDLF_ 0 0 0 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 ENSG00000185115|ENST00000332303|NSMCE3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.300537109375 2 579.297507 1156.58046 1.2685 0.00073485 1.2769 0.00073972 2.5454 0.0014746 579.2985528757132 95.413 0.27943 89.237 89.12 89.399 -6.1757 27 15 3 0 0 0 0.047788 1 63195 63195 45.7 5.7499 1 13129000 77963 9334 52178 53286 90649 90649 0.008434939001972452 YKDLVTVV 8 Unmodified _YKDLVTVV_ 0 0 0 ACAP1|p.P304L|1|0.19|ENSG00000072818|chr17:7346395-7346395|C/T|missense_variant ACAP1|p.P304L|1|0.19|ENSG00000072818|chr17:7346395-7346395|C/T|missense_variant ACAP1|p.P304L|1|0.19|ENSG00000072818|chr17:7346395-7346395|C/T|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 936.2059936523438 1 936.54006 935.532783 0.34141 0.00031975 -0.30631 -0.00028687 0.035106 3.2878E-05 936.5395264444414 93.729 0.22179 93.297 93.137 93.359 -0.43132 16 9 2 0 0 0 0.79783 1 51164 51164 7.9102 0 1 376300 77964 6 52179 53287 90650 90650 0.06243839700039189 YKDSMNFSLTS 11 Unmodified _YKDSMNFSLTS_ 0 0 0 REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD REV__nc|ENSG00000186197|Q8WWZ3-2|EDARADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5325622558594 3 431.532427 1291.57545 0.79591 0.00034346 0.70332 0.0003035 1.4992 0.00064697 431.53256748023415 22.307 0.32019 19.572 19.394 19.714 -2.7348 36 16 3 0 0 0 0.70069 1 11995 11995 1.9275 0.021128 1 8155500 + 77965 23559 52180 53288 90651 90651 -0.058671780246868366 YKDWQEMMGY 10 Unmodified _YKDWQEMMGY_ 0 0 0 REV__ENSG00000225526|ENST00000564146|MKRN2OS REV__ENSG00000225526|ENST00000564146|MKRN2OS MSMS AL20221201_MKP_PDAC_01 4 451.1914367675781 3 450.854625 1349.54204 NaN NaN NaN NaN NaN NaN NaN 18.882 1 16.26 15.76 16.76 -2.6215 0 0 0 0.99897 1 9970 9970 0.77653 0 1 + 77966 24386 52181 53289 90652 90652 -0.11874503068247577 YKEINNKLYLI 11 Unmodified _YKEINNKLYLI_ 0 0 0 REV__ENSG00000151838|ENST00000537690|CCDC175 REV__ENSG00000151838|ENST00000537690|CCDC175 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.9378356933594 3 470.937894 1409.79185 1.1605 0.00054651 0.47482 0.00022361 1.6353 0.00077012 470.93774354726804 97.131 0.29245 90.955 90.769 91.062 -6.1757 26 16 2 0 0 0 0.65096 1 64381 64381 8.7518 1.2747 1 16249000 + 77967 21094 52182 53290 90653 90653 0.10334745871341511 YKFFAPNYIQ 10 Unmodified _YKFFAPNYIQ_ 0 0 0 REV__ENSG00000157350|ENST00000342907|ST3GAL2 REV__ENSG00000157350|ENST00000342907|ST3GAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8895568847656 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 63.256 1 63.234 62.734 63.734 -0.021614 0 0 0 0.94014 1 34599 34599 3.3196 0 1 + 77968 21377 52183 53291 90654 90654 0.011222740571838585 YKFGFELPQG 10 Unmodified _YKFGFELPQG_ 0 0 0 ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP ENSG00000265972|ENST00000582401|TXNIP ENSG00000265972|ENST00000582401|TXNIP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.2997436523438 2 593.300581 1184.58661 -0.0011696 -6.9393E-07 0.11783 6.9909E-05 0.11666 6.9215E-05 593.3004826631338 45.74 0.37487 45.712 45.509 45.884 -0.028011 35 18 3 0 0 0 0.50362 1 24520 24520 16.149 2.2431 1 7709400 77969 10861 52184 53292 90655 90655 0.001700121317526282 YKFMYVMY 8 Unmodified _YKFMYVMY_ 0 0 0 REV__ENSG00000105679|ENST00000222286|GAPDHS REV__ENSG00000105679|ENST00000222286|GAPDHS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1777038574219 3 382.17838 1143.51331 -0.41748 -0.00015955 0.098316 3.7574E-05 -0.31917 -0.00012198 382.1783177320859 24.585 0.22783 24.585 24.469 24.697 0 29 13 3 0 0 0 0.80143 1 12569 12569 3.9444 0 1 2563100 + 77970 18447 52185 53293 90656 90656 -0.05270575906706654 YKFMYVMY 8 Unmodified _YKFMYVMY_ 0 0 0 REV__ENSG00000105679|ENST00000222286|GAPDHS REV__ENSG00000105679|ENST00000222286|GAPDHS MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.178955078125 3 382.17838 1143.51331 0.85465 0.00032663 0.67032 0.00025618 1.525 0.00058281 382.17849772867834 27.896 0.45391 24.748 24.568 25.022 -3.1482 79 24 4 0 0 0 0.80143 1 15574 15574 3.9444 1.2092 1 65804000 + 77971 18447 52185 53293 90657 90657 -0.05270575906706654 YKFRTWRQLWL 11 Unmodified _YKFRTWRQLWL_ 0 0 0 nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL nc|ENSG00000239900|P30566-2|ADSL nc|ENSG00000239900|P30566-2|ADSL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.9651489257812 3 532.964777 1595.8725 0.0819 4.365E-05 0.62589 0.00033358 0.70779 0.00037723 532.9653150468654 34.708 0.23453 34.736 34.584 34.818 0.027401 26 10 3 0 0 0 0.74452 1 18275 18275 0.073264 0.073264 1 5591800 77972 10667 52186 53294 90658 90658 0.09840071704888942 YKFRTWRQLWL 11 Unmodified _YKFRTWRQLWL_ 0 0 0 nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL nc|ENSG00000239900|P30566-2|ADSL nc|ENSG00000239900|P30566-2|ADSL MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.3009033203125 3 532.964777 1595.8725 0.80247 0.00042769 1.1693 0.0006232 1.9718 0.0010509 532.9653264903556 39.479 0.31132 35.028 34.896 35.207 -4.4509 35 18 3 0 0 0 0.71728 1 23423 23423 2.6312 2.223 1 20468000 77973 10667 52186 53294 90659 90659 0.09840071704888942 YKFVSYPEI 9 Unmodified _YKFVSYPEI_ 0 0 0 nc|ENSG00000158711|P28324-2|ELK4;ENSG00000158711|ENST00000357992|ELK4 nc|ENSG00000158711|P28324-2|ELK4 nc|ENSG00000158711|P28324-2|ELK4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5337524414062 3 382.534097 1144.58046 0.69826 0.00026711 0.66105 0.00025288 1.3593 0.00051998 382.53443791304977 24.346 0.35016 21.519 21.374 21.724 -2.8273 48 19 3 0 0 0 0.54444 1 13197 13197 2.7352 0 1 12841000 77974 6605 52187 53295 90660 90660 0.013954939002587707 YKFWYFFLYRL 11 Unmodified _YKFWYFFLYRL_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.4325561523438 2 823.43193 1644.84931 NaN NaN NaN NaN NaN NaN NaN 58.974 1 58.913 58.413 59.413 -0.060719 0 0 0 0.94307 1 32134 32134 0.30703 0.30703 1 + 77975 28076 52188 53296 90661 90661 0.05267632867548855 YKFWYFSLYRF 11 Unmodified _YKFWYFSLYRF_ 0 0 0 REV__ENST00000509649.5_1_5:21459626-21462031:+|nuORF REV__ENST00000509649.5_1_5:21459626-21462031:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 810.4028930664062 2 810.405912 1618.79727 NaN NaN NaN NaN NaN NaN NaN 75.018 1 75.018 74.518 75.518 0 0 0 0 0.93933 1 41735 41735 2.9952 2.6446 1 + 77976 28131 52189 53297 90662 90662 0.012624694537862524 YKGDPRHKL 9 Unmodified _YKGDPRHKL_ 0 0 0 REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 372.2109985351562 3 371.876969 1112.60908 0.022566 8.3917E-06 -0.95732 -0.00035601 -0.93476 -0.00034761 371.8767564693057 17.426 0.15861 17.431 17.348 17.507 0.0050545 15 9 2 0 0 0 0.56345 1 8783 8783 4.1895 2.5972 1 948450 + 77977 18103 52190 53298 90663 90663 0.057276563200503006 YKGDPRHKL 9 Unmodified _YKGDPRHKL_ 0 0 0 REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF REV__ENST00000555252.5_1_14:64855058-64907131:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 371.876969 1112.60908 -0.56384 -0.00020968 0.47872 0.00017803 -0.085115 -3.1652E-05 371.87710866146017 17.554 0.11741 17.567 17.49 17.608 0.013866 0.068229 0.0004949 NaN 4.1895 38 26 2 NaN NaN NaN NaN 0 NaN NaN 0 815300 + 77978 18103 52190 53298 0.057276563200503006 YKGEWKPR 8 Unmodified _YKGEWKPR_ 0 0 0 ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR ENSG00000179218|ENST00000316448|CALR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.286865234375 2 532.287808 1062.56106 NaN NaN NaN NaN NaN NaN NaN 88.166 1 88.22 87.72 88.72 0.053352 0 0 0 0.95973 1 49044 49044 8.5933 0 1 77979 8819 52191 53299 90664 90664 0.03228582399970037 YKGLEEFYFKD 11 Unmodified _YKGLEEFYFKD_ 0 0 0 REV__ENSG00000143641|ENST00000366672|GALNT2 REV__ENSG00000143641|ENST00000366672|GALNT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 719.8505859375 2 719.848093 1437.68163 NaN NaN NaN NaN NaN NaN NaN 64.909 1 64.909 64.409 65.409 0 0 0 0 0.94201 1 36204 36204 1.0715 0.61312 1 + 77980 20658 52192 53300 90665 90665 -0.019700991877243723 YKGQQECL 8 Unmodified _YKGQQECL_ 0 0 0 ENST00000520337.1_1_8:104387969-104388098:+|nuORF ENST00000520337.1_1_8:104387969-104388098:+|nuORF ENST00000520337.1_1_8:104387969-104388098:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.7273254394531 2 484.728935 967.443317 NaN NaN NaN NaN NaN NaN NaN 27.988 1 27.988 27.488 28.488 0 0 0 0 0.94494 1 14437 14437 11.64 1.5664 1 77981 14723 52193 53301 90666 90666 -0.04170738250991235 YKGRTGLCS 9 Unmodified _YKGRTGLCS_ 0 0 0 REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7510070800781 2 492.750201 983.48585 0.86354 0.00042551 0.7233 0.0003564 1.5868 0.00078191 492.75061408605745 49.45 0.23557 49.057 48.943 49.178 -0.3923 20 11 2 0 0 0 0.32871 1 26587 26587 15.847 3.3156 1 3007100 + 77982 28019 52194 53302 90667 90667 -0.006553431227644069 YKGRTGLCS 9 Unmodified _YKGRTGLCS_ 0 0 0 REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 492.750201 983.48585 0.86354 0.00042551 0.7233 0.0003564 1.5868 0.00078191 492.75061408605745 49.45 0.23557 49.057 48.943 49.178 -0.3923 0.049978 -0.00017315 NaN 15.847 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3007100 + 77983 28019 52194 53302 -0.006553431227644069 YKGRTGLCS 9 Unmodified _YKGRTGLCS_ 0 0 0 REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF REV__ENST00000502406.5_1_17:47783564-47785514:-|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 492.750201 983.48585 0.8896 0.00043835 1.9685 0.00096999 2.8581 0.0014083 492.75094548002653 54.823 0.19483 48.958 48.864 49.058 -5.8653 -0.049978 0.001054 NaN 15.847 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 11249000 + 77984 28019 52194 53302 -0.006553431227644069 YKGSASLSI 9 Unmodified _YKGSASLSI_ 0 0 0 REV__ENSG00000177807|ENST00000644903|KCNJ10 REV__ENSG00000177807|ENST00000644903|KCNJ10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2514343261719 2 463.2531 924.491647 1.1876 0.00055016 -2.3536 -0.0010903 -1.166 -0.00054016 463.2501686457664 40.874 0.66057 36.266 35.923 36.583 -4.6079 95 40 4 0 0 0 0.1773 1 24578 24578 25.399 0.72543 1 14528000 + 77985 23005 52195 53303 90668 90668 0.026380786605727735 YKHEILWEIQE 11 Unmodified _YKHEILWEIQE_ 0 0 0 REV__ENSG00000166266|ENST00000393094|CUL5 REV__ENSG00000166266|ENST00000393094|CUL5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.58837890625 3 496.589153 1486.74563 NaN NaN NaN NaN NaN NaN NaN 24.694 1 24.692 24.192 25.192 -0.0016766 0 0 0 0.94337 1 12625 12625 0.094841 0 1 + 77986 22099 52196 53304 90669 90669 0.021726809692609095 YKIDFVRF 8 Unmodified _YKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2996215820312 2 544.300384 1086.58622 0.57189 0.00031128 -0.14603 -7.9484E-05 0.42586 0.00023179 544.3003026801541 67.086 0.25667 67.104 66.961 67.218 0.018036 22 12 2 0 0 0 0.27285 1 36868 36868 58.679 36.932 1 5803000 77987 2630 52197 53305 90670 90670 0.04638637202560858 YKIDFVRF 8 Unmodified _YKIDFVRF_ 0 0 0 ENSG00000109103|ENST00000335765|UNC119;nc|ENSG00000109103|Q13432-2|UNC119 ENSG00000109103|ENST00000335765|UNC119 ENSG00000109103|ENST00000335765|UNC119 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.8011474609375 2 544.300384 1086.58622 0.75534 0.00041113 1.0934 0.00059515 1.8488 0.0010063 544.3014997219123 90.444 0.26168 84.268 84.11 84.372 -6.1757 24 15 2 0 0 0 0.098639 1 59701 59701 100.37 39.982 1 12860000 77988 2630 52197 53305 90671 90671 0.04638637202560858 YKIDRIYF 8 Unmodified _YKIDRIYF_ 0 0 0 ENST00000517629.1_1_5:170351379-170351789:+|nuORF ENST00000517629.1_1_5:170351379-170351789:+|nuORF ENST00000517629.1_1_5:170351379-170351789:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 373.2069396972656 3 373.206203 1116.59678 NaN NaN NaN NaN NaN NaN NaN 49.945 1 44.406 43.906 44.906 -5.5391 0 0 0 0.94061 1 31263 31263 9.3831 2.2814 1 77989 14681 52198 53306 90672 90672 0.04314619856995705 YKIELNPTP 9 Unmodified _YKIELNPTP_ 0 0 0 REV__ENST00000558595.5_1_15:58304322-58357848:-|nuORF REV__ENST00000558595.5_1_15:58304322-58357848:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.795166015625 2 537.795132 1073.57571 -0.20901 -0.00011241 0.17482 9.4015E-05 -0.034198 -1.8392E-05 537.7953995366671 24.586 0.17014 24.586 24.49 24.66 0 23 10 3 0 0 0 0.46501 1 12561 12561 9.3831 0 1 2039200 + 77990 19643 52199 53307 90673 90673 0.0418660975747116 YKIGVKNLL 9 Unmodified _YKIGVKNLL_ 0 0 0 ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L ENSG00000203734|ENST00000541398|ECT2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3318481445312 2 524.331685 1046.64882 1.2174 0.00063831 -0.86281 -0.0004524 0.35457 0.00018591 524.3312595071343 46.855 0.16528 46.821 46.712 46.877 -0.033417 12 7 2 0 0 0 0.16226 1 25223 25223 26.884 0 1 2374300 77991 10222 52200 53308 90674 90674 0.1273578327075029 YKIHLLIII 9 Unmodified _YKIHLLIII_ 0 0 0 ENST00000435641.5_1_6:6362566-6366679:-|nuORF ENST00000435641.5_1_6:6362566-6366679:-|nuORF ENST00000435641.5_1_6:6362566-6366679:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 563.3733520507812 2 563.373352 1124.73215 NaN NaN NaN NaN NaN NaN NaN 104.86 1 98.685 98.185 99.185 -6.1757 0 0 0 0.85737 1 70193 70193 0.6015 0 1 77992 13316 52201 53309 90675 90675 0.1747751971861362 YKIHMKVSRP 10 Unmodified _YKIHMKVSRP_ 0 0 0 REV__nc|ENSG00000143398|Q99755-2|PIP5K1A REV__nc|ENSG00000143398|Q99755-2|PIP5K1A MSMS AL20221201_MKP_PDAC_01 4 420.2420654296875 3 420.241142 1257.7016 NaN NaN NaN NaN NaN NaN NaN 77.402 1 71.227 70.727 71.727 -6.1757 0 0 0 0.85122 1 50628 50628 5.7834 1.9071 1 + 77993 20635 52202 53310 90676 90676 0.08305418061900127 YKIIPPKS 8 Unmodified _YKIIPPKS_ 0 0 0 nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL nc|ENSG00000106078|O75128-6|COBL nc|ENSG00000106078|O75128-6|COBL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.2921447753906 2 473.292028 944.569503 0.82722 0.00039152 -1.1271 -0.00053345 -0.29989 -0.00014193 473.2917795700531 50.704 0.3675 50.291 50.15 50.518 -0.41351 38 17 3 0 0 0 0.54555 1 27301 27301 30.637 0 1 4607800 77994 2398 52203 53311 90677 90677 0.09500136316603403 YKILCFIFI 9 Unmodified _YKILCFIFI_ 0 0 0 REV__SLC6A11|p.F531C|1|0.19|ENSG00000132164|chr3:10935045-10935045|T/G|missense_variant REV__SLC6A11|p.F531C|1|0.19|ENSG00000132164|chr3:10935045-10935045|T/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5592346191406 3 387.224318 1158.65112 -0.54268 -0.00021014 0.56416 0.00021846 0.021481 8.3181E-06 387.22458856959753 18.946 0.14758 18.969 18.888 19.035 0.023106 20 9 3 0 0 0 0.49272 1 9525 9525 4.897 0 1 4965200 + 77995 30101 52204 53312 90678 90678 0.0781449568419248 YKILSTHL 8 Unmodified _YKILSTHL_ 0 0 0 ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK ENSG00000134852|ENST00000513440|CLOCK MULTI-SECPEP AL20221201_MKP_PDAC_01 4 487.2518310546875 2 487.78711 973.559667 1.0884 0.00053089 -1.4754 -0.0007197 -0.38707 -0.00018881 487.7864700201015 50.444 0.25711 44.904 44.741 44.998 -5.5391 19 16 2 0 0 0 8.7369 1 31713 31713 32.305 11.852 1 8538600 77996 4646 52205 53313 90679 90679 0.0718294831123103 YKIPFFPVF 9 Unmodified _YKIPFFPVF_ 0 0 0 ENST00000393249.6_1_12:76746490-76746664:-|nuORF ENST00000393249.6_1_12:76746490-76746664:-|nuORF ENST00000393249.6_1_12:76746490-76746664:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7806396484375 2 579.323328 1156.6321 0.4666 0.00027031 -2.3179 -0.0013428 -1.8513 -0.0010725 579.3219891600548 91.317 0.24323 90.822 90.688 90.932 -0.49458 16 10 2 0 0 0 0.21798 1 49849 49849 2.3027 0 1 408930 77997 12699 52206 53314 90680 90680 0.0600528238478546 YKITASARGY 10 Unmodified _YKITASARGY_ 0 0 0 ENSG00000108582|ENST00000225719|CPD;nc|ENSG00000108582|O75976-2|CPD ENSG00000108582|ENST00000225719|CPD ENSG00000108582|ENST00000225719|CPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.3056030273438 2 565.303655 1128.59276 1.3795 0.00077986 0.85655 0.00048421 2.2361 0.0012641 565.3041215581198 47.057 0.20733 47.023 46.898 47.105 -0.033417 18 10 2 0 0 0 0.17714 1 25314 25314 36.506 5.8697 1 8544000 77998 2584 52207 53315 90681 90681 0.03360530363283942 YKKAWDLF 8 Unmodified _YKKAWDLF_ 0 0 0 REV__ENSG00000036530|ENST00000261835|CYP46A1 REV__ENSG00000036530|ENST00000261835|CYP46A1 MSMS AL20221201_MKP_PDAC_01 4 357.5256958007812 3 357.527165 1069.55967 NaN NaN NaN NaN NaN NaN NaN 42.063 1 37.378 36.878 37.878 -4.6846 0 0 0 0.93066 1 25359 25359 10.824 5.527 1 + 77999 17169 52208 53316 90682 90682 0.02766948311204942 YKKEFQKAM 9 Unmodified _YKKEFQKAM_ 0 0 0 RYR3|p.S3940Y|1|0.08|ENSG00000198838|chr15:33837799-33837799|C/A|missense_variant RYR3|p.S3940Y|1|0.08|ENSG00000198838|chr15:33837799-33837799|C/A|missense_variant RYR3|p.S3940Y|1|0.08|ENSG00000198838|chr15:33837799-33837799|C/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 586.80908203125 2 586.810259 1171.60597 NaN NaN NaN NaN NaN NaN NaN 41.389 1 36.781 36.281 37.281 -4.6079 0 0 0 0.15549 1 24846 24846 36.127 7.6402 1 78000 30153 52209 53317 90683 90683 0.027026451509982508 YKKEREKI 8 Unmodified _YKKEREKI_ 0 0 0 REV__nc|ENSG00000119242|Q53HC0-2|CCDC92 REV__nc|ENSG00000119242|Q53HC0-2|CCDC92 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.2175598144531 3 365.216991 1092.62914 0.98827 0.00036093 0.16187 5.9118E-05 1.1501 0.00042005 365.217026373367 17.126 0.28768 14.539 14.405 14.693 -2.5866 161 51 4 0 0 0 0.63229 2 8972 8865;8972 18.146 3.741 1 43863000 + 78001 19184 52210 53318 90684;90685 90685 0.08653407259998858 YKKEVAQE 8 Unmodified _YKKEVAQE_ 0 0 0 REV__nc|ENSG00000073803|O43283-5|MAP3K13 REV__nc|ENSG00000073803|O43283-5|MAP3K13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7656860351562 2 497.763832 993.513111 NaN NaN NaN NaN NaN NaN NaN 0.3687 1 0.3687 -0.1313 0.8687 0 0 0 0 0.97444 1 183 183 0.6015 0 1 + 78002 17542 52211 53319 90686 90686 0.01609463689283075 YKKFDSKWS 9 Unmodified _YKKFDSKWS_ 0 0 0 REV__nc|ENSG00000155090|Q13118-3|KLF10 REV__nc|ENSG00000155090|Q13118-3|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8056640625 2 594.806031 1187.59751 -0.050483 -3.0028E-05 0.11965 7.1171E-05 0.069172 4.1144E-05 594.8059891596614 45.532 0.38102 45.504 45.343 45.724 -0.028011 46 19 3 0 0 0 0.03568 1 24427 24427 52.268 14.294 1 70817000 + 78003 21258 52212 53320 90687 90687 0.011214145060421288 YKKFDSKWS 9 Unmodified _YKKFDSKWS_ 0 0 0 REV__nc|ENSG00000155090|Q13118-3|KLF10 REV__nc|ENSG00000155090|Q13118-3|KLF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.87255859375 3 396.873113 1187.59751 -0.056908 -2.2585E-05 0.02276 9.0327E-06 -0.034148 -1.3552E-05 396.87316005661467 45.538 0.29992 45.51 45.381 45.681 -0.028011 49 15 4 0 0 0 0.32871 1 24434 24434 10.8 3.1906 1 49234000 + 78004 21258 52212 53320 90688 90688 0.011214145060421288 YKKFDSKWS 9 Unmodified _YKKFDSKWS_ 0 0 0 REV__nc|ENSG00000155090|Q13118-3|KLF10 REV__nc|ENSG00000155090|Q13118-3|KLF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8065795898438 2 594.806031 1187.59751 0.47531 0.00028272 0.44511 0.00026476 0.92042 0.00054747 594.8062656864458 49.918 0.43887 44.379 44.155 44.594 -5.5391 70 27 3 0 0 0 0.05447 2 31111 31111;31251 43.858 11.073 1 64963000 + 78005 21258 52212 53320 90689;90690 90689 0.011214145060421288 YKKHHYPQRAF 11 Unmodified _YKKHHYPQRAF_ 0 0 0 ENST00000562083.1_1_16:19535357-19539342:+|nuORF;ENST00000381396.9_1_16:19535357-19543792:+|nuORF ENST00000562083.1_1_16:19535357-19539342:+|nuORF ENST00000562083.1_1_16:19535357-19539342:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 737.89111328125 2 737.888752 1473.76295 NaN NaN NaN NaN NaN NaN NaN 75.14 1 68.964 68.464 69.464 -6.1757 0 0 0 0.77961 1 49133 49133 13.042 1.5478 1 78006 12618 52213 53321 90691 90691 0.04502066085524348 YKKKINPIK 9 Unmodified _YKKKINPIK_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|62|2|sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|62|2|sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|62|2|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.365966796875 2 566.366059 1130.71756 -0.35414 -0.00020057 -0.43097 -0.00024409 -0.78511 -0.00044466 566.365693392647 105.08 0.060631 105.03 105 105.06 -0.048737 23 13 2 0 0 0 0.62242 1 58314 58314 0 0 1 10920000 78007 15974 52214 53322 90692 90692 0.1574344757043491 YKKKKKKI 8 Unmodified _YKKKKKKI_ 0 0 0 REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF REV__ENST00000473131.5_1_20:5924535-5931132:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1063.40625 1 1063.73501 1062.72774 0.2667 0.0002837 4.2929 0.0045665 4.5596 0.0048502 1063.7366159732642 40.23 0.16756 39.933 39.882 40.05 -0.29716 9 7 2 0 0 0 8.7369 1 21292 21292 0 0 1 1170100 + 78008 17837 52215 53323 90693 90693 0.19888055295700724 YKKKRRERKKD 11 Unmodified _YKKKRRERKKD_ 0 0 0 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 REV__ENSG00000124383|ENST00000244230|MPHOSPH10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.7378234863281 4 384.487671 1533.92158 0.17296 6.65E-05 -1.8434 -0.00070876 -1.6704 -0.00064226 384.7375157463986 42.338 0.27707 42.329 42.144 42.421 -0.0088196 16 12 2 0 0 0 0.74096 1 22682 22682 0.40827 0.078994 1 9629000 + 78009 19442 52216 53324 90694 90694 0.17597359993806094 YKKPDYNLF 9 Unmodified _YKKPDYNLF_ 0 0 0 nc|ENSG00000144057|Q96JF0-2|ST6GAL2;ENSG00000144057|ENST00000409382|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 nc|ENSG00000144057|Q96JF0-2|ST6GAL2 MSMS AL20221201_MKP_PDAC_01 4 594.3051147460938 2 594.308406 1186.60226 NaN NaN NaN NaN NaN NaN NaN 95.909 1 89.733 89.233 90.233 -6.1757 0 0 0 0.39118 1 63540 63540 20.415 5.1661 1 78010 5582 52217 53325 90695 90695 0.016422986487896196 YKKPFRPLPK 10 Unmodified _YKKPFRPLPK_ 0 0 0 REV__ENSG00000115904|ENST00000402219|SOS1 REV__ENSG00000115904|ENST00000402219|SOS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.3917846679688 2 637.392608 1272.77066 NaN NaN NaN NaN NaN NaN NaN 102.94 1 102.89 102.39 103.39 -0.047928 0 0 0 1.0024 1 57171 57171 0.40072 0.050084 1 + 78011 19014 52218 53326 90696 90696 0.14518825353115972 YKKSSKMVFK 10 Oxidation (M) _YKKSSKM(Oxidation (M))VFK_ YKKSSKM(1)VFK YKKSSKM(64)VFK 0 0 1 nc|ENSG00000103647|Q9UQ03-2|CORO2B;ENSG00000103647|ENST00000261861|CORO2B nc|ENSG00000103647|Q9UQ03-2|CORO2B nc|ENSG00000103647|Q9UQ03-2|CORO2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 631.3523559570312 2 631.352291 1260.69003 0.50376 0.00031805 0.25709 0.00016232 0.76086 0.00048037 631.3524749987059 98.62 0.11469 92.445 92.378 92.493 -6.1757 18 8 3 0 0 0 0.038363 1 65426 65426 63.961 8.4578 1 32437000 78012 2157 52219 53327 90697 90697 373 0.07011176247920048 YKKVELFP 8 Unmodified _YKKVELFP_ 0 0 0 ENSG00000133661|ENST00000372292|SFTPD ENSG00000133661|ENST00000372292|SFTPD ENSG00000133661|ENST00000372292|SFTPD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 512.2969970703125 2 512.29731 1022.58007 -0.1324 -6.783E-05 -0.13719 -7.028E-05 -0.26959 -0.00013811 512.2972355234828 55.919 0.42998 55.85 55.685 56.115 -0.068737 40 22 3 0 0 0 0.58902 1 30347 30347 26.884 0 1 13033000 78013 4528 52220 53328 90698 90698 0.06968118971042259 YKLATSEAQL 10 Unmodified _YKLATSEAQL_ 0 0 0 REV__ENSG00000144535|ENST00000325385|DIS3L2 REV__ENSG00000144535|ENST00000325385|DIS3L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.2044677734375 3 375.20464 1122.59209 -0.41764 -0.0001567 -0.25626 -9.6148E-05 -0.67389 -0.00025285 375.2045252237404 21.084 0.16659 21.084 20.988 21.154 0 43 28 2 0 0 0 0.69064 1 10613 10613 1.9064 0.79662 1 1668700 + 78014 20713 52221 53329 90699 90699 0.035696909235639396 YKLCRPLR 8 Unmodified _YKLCRPLR_ 0 0 0 REV__nc|ENSG00000070729|Q14028-2|CNGB1 REV__nc|ENSG00000070729|Q14028-2|CNGB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 350.2066345214844 3 350.207661 1047.60115 NaN NaN NaN NaN NaN NaN NaN 51.576 1 51.146 50.646 51.646 -0.43058 0 0 0 0.97444 1 27816 27816 1.6526 0 1 + 78015 17477 52222 53330 90700 90700 0.07925805798890906 YKLDDQWRYEY 11 Unmodified _YKLDDQWRYEY_ 0 0 0 REV__ENSG00000120162|ENST00000262244|MOB3B REV__ENSG00000120162|ENST00000262244|MOB3B MSMS AL20221201_MKP_PDAC_01 4 789.8663940429688 2 789.864805 1577.71506 NaN NaN NaN NaN NaN NaN NaN 50.397 1 44.858 44.358 45.358 -5.5391 0 0 0 0.68775 1 31609 31609 17.443 1.2935 1 + 78016 19231 52223 53331 90701 90701 -0.05069097415798751 YKLDSNVS 8 Unmodified _YKLDSNVS_ 0 0 0 REV__ENSG00000100302|ENST00000216127|RASD2 REV__ENSG00000100302|ENST00000216127|RASD2 MSMS AL20221201_MKP_PDAC_01 4 462.9024047851562 2 463.234907 924.455261 NaN NaN NaN NaN NaN NaN NaN 76.201 1 70.025 69.525 70.525 -6.1757 0 0 0 0.94061 1 49848 49848 12.532 0 1 + 78017 18039 52224 53332 90702 90702 -0.009987982361394643 YKLEVNQI 8 Unmodified _YKLEVNQI_ 0 0 0 REV__ENSG00000132549|ENST00000357162|VPS13B REV__ENSG00000132549|ENST00000357162|VPS13B MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.783935546875 2 503.782025 1005.5495 0.74625 0.00037594 0.25084 0.00012637 0.99709 0.00050231 503.78204479014335 42.237 0.57296 37.553 37.234 37.807 -4.6846 98 36 4 0 0 0 0.25522 1 25372 25372 61.357 1.2836 1 106820000 + 78018 19862 52225 53333 90703 90703 0.04694340586001999 YKLHFREMPS 10 Unmodified _YKLHFREMPS_ 0 0 0 REV__ENSG00000164002|ENST00000415550|EXO5 REV__ENSG00000164002|ENST00000415550|EXO5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.3322143554688 2 654.33189 1306.64923 NaN NaN NaN NaN NaN NaN NaN 103.21 1 103.1 102.6 103.6 -0.10458 0 0 0 1.0024 1 56296 56296 0.40072 0 1 + 78019 21846 52226 53334 90704 90704 0.008168349282868803 YKLIQNGF 8 Unmodified _YKLIQNGF_ 0 0 0 ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3;ENST00000380987.2_1_13:28578191-28599431:-|nuORF ENSG00000122025|ENST00000241453|FLT3 ENSG00000122025|ENST00000241453|FLT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 491.7714538574219 2 491.77146 981.528367 0.53821 0.00026468 0.45215 0.00022235 0.99036 0.00048703 491.77165855846874 42.33 0.22075 42.321 42.247 42.467 -0.0088196 15 9 2 0 0 0 0.55032 1 22687 22687 30.225 0 1 5926900 78020 3617 52227 53335 90705 90705 0.03686375277140996 YKLIRIKSSL 10 Unmodified _YKLIRIKSSL_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 611.3922119140625 2 610.889898 1219.76524 1.5094 0.00092208 -0.44824 -0.00027383 1.0612 0.00064825 610.8894522968995 106.87 0.22651 100.69 100.67 100.89 -6.1757 55 43 2 0 0 0 0.23991 1 71578 71578 1.4819 0 1 3073700 + 78021 20652 52228 53336 90706 90706 0.1641510177064447 YKLKKMIR 8 Unmodified _YKLKKMIR_ 0 0 0 REV__nc|ENSG00000138778|Q02224-3|CENPE REV__nc|ENSG00000138778|Q02224-3|CENPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 360.5625610351562 3 360.563445 1078.66851 0.028126 1.0141E-05 -1.1794 -0.00042523 -1.1512 -0.00041509 360.56283940935134 34.447 0.4842 34.475 34.184 34.668 0.027401 44 22 3 0 0 0 0.81107 1 18236 18236 0 0 1 5185200 + 78022 20366 52229 53337 90707 90707 0.1323183600984521 YKLLGGSVHL 10 Unmodified _YKLLGGSVHL_ 0 0 0 REV__nc|ENSG00000086991|Q9NPH5-2|NOX4 REV__nc|ENSG00000086991|Q9NPH5-2|NOX4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8829650878906 3 362.88172 1085.62333 1.1734 0.00042581 0.85824 0.00031144 2.0317 0.00073725 362.8819831916795 46.302 0.61788 41.236 40.841 41.458 -5.0659 161 44 5 0 0 0 0.35903 1 28394 28394 15.739 0.49014 1 767780000 + 78023 17773 52230 53338 90708 90708 0.08394308748324875 YKLLQEEL 8 Unmodified _YKLLQEEL_ 0 0 0 REV__ENST00000509678.1_1_4:54915115-54930467:-|nuORF REV__ENST00000509678.1_1_4:54915115-54930467:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2904663085938 2 518.289682 1034.56481 0.32488 0.00016838 1.7365 0.00089999 2.0613 0.0010684 518.2907691177718 97.946 0.19489 97.946 97.843 98.037 0 9 6 2 0 0 0 0.80676 1 54131 54131 2.5775 0 1 298200 + 78024 18652 52231 53339 90709 90709 0.04891207383184337 YKLPLLRSL 9 Unmodified _YKLPLLRSL_ 0 0 0 REV__ENSG00000205085|ENST00000682356|GARIN1A REV__ENSG00000205085|ENST00000682356|GARIN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.2377014160156 3 368.237615 1101.69102 -0.42914 -0.00015803 0.43699 0.00016092 0.0078496 2.8905E-06 368.23773628462476 56.143 0.7736 56.074 55.626 56.4 -0.068737 91 40 3 0 0 0 0.0090948 1 30451 30451 67.838 0 1 10494000 + 78025 24213 52232 53340 90710 90710 0.14423758679117782 YKLPLLRSL 9 Unmodified _YKLPLLRSL_ 0 0 0 REV__ENSG00000205085|ENST00000682356|GARIN1A REV__ENSG00000205085|ENST00000682356|GARIN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.85302734375 2 551.852784 1101.69102 -0.33162 -0.000183 0.12296 6.7854E-05 -0.20866 -0.00011515 551.8529067822835 56.165 0.87206 56.096 55.607 56.479 -0.068737 104 45 3 0 0 0 0.078314 2 30493 30493;30717 38.176 3.2435 1 16567000 + 78026 24213 52232 53340 90711;90712 90711 0.14423758679117782 YKLPLLRSL 9 Unmodified _YKLPLLRSL_ 0 0 0 REV__ENSG00000205085|ENST00000682356|GARIN1A REV__ENSG00000205085|ENST00000682356|GARIN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.853271484375 2 551.852784 1101.69102 1.1848 0.00065382 -0.46961 -0.00025916 0.71516 0.00039466 551.8524364540905 86.549 0.91568 80.373 79.727 80.643 -6.1757 131 49 3 0 0 0 0.010611 1 56812 56812 78.728 2.9672 1 34950000 + 78027 24213 52232 53340 90713 90713 0.14423758679117782 YKLPYLPFL 9 Unmodified _YKLPYLPFL_ 0 0 0 REV__ENST00000456533.1_1_7:7607061-7607097:+|nuORF REV__ENST00000456533.1_1_7:7607061-7607097:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.2261352539062 3 385.226716 1152.65832 1.6506 0.00063584 -1.0792 -0.00041574 0.57136 0.0002201 385.2257983334049 63.95 1.001 57.775 57.279 58.28 -6.1757 83 54 3 0 0 0 0.41742 2 41240 41240;41388 7.609 3.7326 1 12616000 + 78028 27256 52233 53341 90714;90715 90714 0.08809551556259976 YKLPYLPFL 9 Unmodified _YKLPYLPFL_ 0 0 0 REV__ENST00000456533.1_1_7:7607061-7607097:+|nuORF REV__ENST00000456533.1_1_7:7607061-7607097:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 385.213623046875 3 385.226716 1152.65832 1.6506 0.00063584 -1.0792 -0.00041574 0.57136 0.0002201 385.2257983334049 63.95 1.001 57.775 57.279 58.28 -6.1757 83 54 3 0 0 0 0.16785 1 41317 41317 11.495 1.1795 1 12616000 + 78029 27256 52233 53341 90716 90716 0.08809551556259976 YKLRKLIKM 9 Unmodified _YKLRKLIKM_ 0 0 0 REV__ENST00000297273.8_1_7:94167189-94168288:+|nuORF REV__ENST00000297273.8_1_7:94167189-94168288:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 596.8858032226562 2 596.883561 1191.75257 NaN NaN NaN NaN NaN NaN NaN 102.94 1 96.767 96.267 97.267 -6.1757 0 0 0 0.85798 1 69054 69054 0.52476 0.066424 1 + 78030 25279 52234 53342 90717 90717 0.16436367106757643 YKLSCEIAL 9 Unmodified _YKLSCEIAL_ 0 0 0 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9 MSMS AL20221201_MKP_PDAC_01 4 520.2601318359375 2 520.27826 1038.54197 NaN NaN NaN NaN NaN NaN NaN 54.269 1 48.404 47.904 48.904 -5.8653 0 0 0 0.22437 1 34397 34397 29.082 5.9332 1 + 78031 17004 52235 53343 90718 90718 0.024238649940571122 YKLSPHEI 8 Unmodified _YKLSPHEI_ 0 0 0 REV__ENSG00000108381|ENST00000263080|ASPA REV__ENSG00000108381|ENST00000263080|ASPA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.768798828125 2 493.768917 985.523281 -0.31788 -0.00015696 0.058007 2.8642E-05 -0.25988 -0.00012832 493.76878384027555 24.574 0.17014 24.574 24.49 24.66 0 12 10 2 0 0 0 0.58902 1 12574 12574 26.884 2.8631 1 623100 + 78032 18602 52236 53344 90719 90719 0.029940714145027414 YKLYYLSWE 9 Unmodified _YKLYYLSWE_ 0 0 0 ENST00000409175.5_1_2:160599702-160602296:+|nuORF ENST00000409175.5_1_2:160599702-160602296:+|nuORF ENST00000409175.5_1_2:160599702-160602296:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.8185424804688 2 632.816064 1263.61758 0.1424 9.0112E-05 2.0294 0.0012842 2.1718 0.0013743 632.8173012623532 20.596 0.094154 20.606 20.557 20.651 0.010553 6 3 2 0 0 0 0.61381 1 10530 10530 0.52476 0.066424 1 307910 78033 12955 52237 53345 90720 90720 -0.0036883455402403342 YKMQDRIF 8 Unmodified _YKMQDRIF_ 0 0 0 REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2 REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7800903320312 2 550.781502 1099.54845 NaN NaN NaN NaN NaN NaN NaN 83.434 1 83.434 82.934 83.934 0 0 0 0 0.97444 1 46272 46272 2.3027 0.24298 1 + 78034 29802 52238 53346 90721 90721 0.002658029454323696 YKNDITWPYFR 11 Unmodified _YKNDITWPYFR_ 0 0 0 REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF REV__ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.5849304199219 3 501.585743 1501.7354 -0.7584 -0.0003804 -0.051163 -2.5663E-05 -0.80956 -0.00040606 501.58559405756824 19.743 0.45775 19.771 19.634 20.092 0.028357 44 25 3 0 0 0 0.74203 1 9965 9965 0.08335 0 1 660310 + 78035 18318 52239 53347 90722 90722 0.004601180346298861 YKNFTKRRWYR 11 Unmodified _YKNFTKRRWYR_ 0 0 0 REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF REV__ENST00000488349.1_1_2:175260903-175262068:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 809.4424438476562 2 809.441683 1616.86881 NaN NaN NaN NaN NaN NaN NaN 70.507 1 70.03 69.53 70.53 -0.47735 0 0 0 0.9435 1 38567 38567 0 0 1 + 78036 27843 52240 53348 90723 90723 0.08505401931006418 YKNKSKKKKKK 11 Unmodified _YKNKSKKKKKK_ 0 0 0 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 ENSG00000125482|ENST00000334270|TTF1 MSMS AL20221201_MKP_PDAC_01 4 469.976318359375 3 469.976794 1406.90855 NaN NaN NaN NaN NaN NaN NaN 16.215 1 13.658 13.158 14.158 -2.557 0 0 0 0.9435 1 8383 8383 0 0 1 78037 3855 52241 53349 90724 90724 0.22137528881717117 YKNLVHIIT 9 Unmodified _YKNLVHIIT_ 0 0 0 ENSG00000111245|ENST00000228841|MYL2 ENSG00000111245|ENST00000228841|MYL2 ENSG00000111245|ENST00000228841|MYL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5531616210938 3 367.553603 1099.63898 NaN NaN NaN NaN NaN NaN NaN 51.238 1 50.825 50.325 51.325 -0.41351 0 0 0 0.6306 1 27615 27615 11.495 3.8858 1 78038 2771 52242 53350 90725 90725 0.09314595265368553 YKNRYKNLLR 10 Unmodified _YKNRYKNLLR_ 0 0 0 REV__ENSG00000151376|ENST00000524826|ME3 REV__ENSG00000151376|ENST00000524826|ME3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.6005859375 3 456.601727 1366.78335 NaN NaN NaN NaN NaN NaN NaN 69.369 1 69.4 68.9 69.9 0.030914 0 0 0 0.97556 1 38127 38127 3.3196 1.7274 1 + 78039 21064 52243 53351 90726 90726 0.11463236745362337 YKNSWPSRY 9 Unmodified _YKNSWPSRY_ 0 0 0 REV__nc|ENSG00000077549|P47756-1|CAPZB REV__nc|ENSG00000077549|P47756-1|CAPZB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 400.8640747070312 3 400.864729 1199.57236 NaN NaN NaN NaN NaN NaN NaN 36.3 1 36.3 35.8 36.8 0 0 0 0 0.84369 1 19244 19244 1.1933 0 1 + 78040 17614 52244 53352 90727 90727 -0.019446402965286325 YKNWRRGAKL 10 Unmodified _YKNWRRGAKL_ 0 0 0 REV__ENSG00000127774|ENST00000248378|EMC6 REV__ENSG00000127774|ENST00000248378|EMC6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5840454101562 3 431.250918 1290.73092 0.7215 0.00031115 -0.93113 -0.00040155 -0.20963 -9.0405E-05 431.25072358660947 31.499 0.32467 27.803 27.622 27.947 -3.6958 31 16 3 0 0 0 0.17253 1 17816 17816 37.075 8.841 1 52801000 + 78041 19589 52245 53353 90728 90728 0.09718698402411974 YKPELFQFN 9 Unmodified _YKPELFQFN_ 0 0 0 REV__ENSG00000189167|ENST00000533490|ZAR1L REV__ENSG00000189167|ENST00000533490|ZAR1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.301025390625 2 593.300581 1184.58661 -0.0011696 -6.9393E-07 0.11783 6.9909E-05 0.11666 6.9215E-05 593.3004826631338 45.74 0.37487 45.712 45.509 45.884 -0.028011 35 18 3 0 0 0 0.25681 1 24625 24625 19.257 6.2145 1 7709400 + 78042 23768 52246 53354 90729 90729 0.0017001213177536556 YKPKEHKE 8 Unmodified _YKPKEHKE_ 0 0 0 REV__ENSG00000125746|ENST00000245925|EML2 REV__ENSG00000125746|ENST00000245925|EML2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 353.5380249023438 3 353.525825 1057.55564 1.6926 0.00059837 -0.9801 -0.00034649 0.71248 0.00025188 353.5258301677064 36.897 0.32452 32.613 32.472 32.796 -4.2835 30 19 2 0 0 0 8.7369 1 21570 21570 10.824 4.1936 1 4216900 + 78043 19512 52247 53355 90730 90730 0.029168588175252808 YKPKRDKGL 9 Unmodified _YKPKRDKGL_ 0 0 0 REV__ENSG00000126653|ENST00000247026|NSRP1 REV__ENSG00000126653|ENST00000247026|NSRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8264770507812 2 552.82984 1103.64513 0.76244 0.0004215 -1.2455 -0.00068856 -0.48307 -0.00026706 552.829063314733 50.704 0.71631 50.65 50.47 51.187 -0.053871 98 35 5 0 0 0 0.18144 1 27568 27568 26.884 0 1 77039000 + 78044 19554 52248 53356 90731 90731 0.09745113496887825 YKPLASLKII 10 Unmodified _YKPLASLKII_ 0 0 0 REV__nc|ENSG00000138759|Q86XX4|FRAS1 REV__nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.3678588867188 2 573.368267 1144.72198 NaN NaN NaN NaN NaN NaN NaN 103.84 1 103.79 103.29 104.29 -0.048737 0 0 0 1.0024 1 57663 57663 0.40072 0 1 + 78045 20360 52249 53357 90732 90732 0.15540911993343798 YKPNWTKRF 9 Unmodified _YKPNWTKRF_ 0 0 0 REV__nc|ENSG00000196792|Q13033-2|STRN3 REV__nc|ENSG00000196792|Q13033-2|STRN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.3338623046875 2 620.33529 1238.65603 NaN NaN NaN NaN NaN NaN NaN 93.141 1 92.684 92.184 93.184 -0.4574 0 0 0 0.84564 1 50905 50905 2.0598 0 1 + 78046 29884 52250 53358 90733 90733 0.04624515871159929 YKQRYEKHYHK 11 Unmodified _YKQRYEKHYHK_ 0 0 0 REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 790.4100341796875 2 790.410049 1578.80554 NaN NaN NaN NaN NaN NaN NaN 80.872 1 80.872 80.372 81.372 0 0 0 0 0.9435 1 44898 44898 0 0 1 + 78047 26623 52251 53359 90734 90734 0.03929416423102339 YKQVNPREF 9 Unmodified _YKQVNPREF_ 0 0 0 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 REV__nc|ENSG00000172943|Q9UPP1-4|PHF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2088317871094 3 394.208495 1179.60366 1.3085 0.00051584 -0.07708 -3.0386E-05 1.2315 0.00048545 394.2084327890584 19.797 0.56502 17.141 16.89 17.455 -2.6564 130 35 5 0 0 0 0.43463 1 10489 10489 7.1017 1.3183 1 117180000 + 78048 22691 52252 53360 90735 90735 0.021039327375319772 YKRALLLLRRR 11 Unmodified _YKRALLLLRRR_ 0 0 0 nc|ENSG00000077800|O75344-3|FKBP6;nc|ENSG00000077800|O75344-2|FKBP6;ENSG00000077800|ENST00000252037|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 nc|ENSG00000077800|O75344-3|FKBP6 MSMS AL20221201_MKP_PDAC_01 4 729.4796752929688 2 729.480611 1456.94667 NaN NaN NaN NaN NaN NaN NaN 103.47 1 97.292 96.792 97.792 -6.1757 0 0 0 0.9435 1 69369 69369 0 0 1 78049 1228 52253 53361 90736 90736 0.23647459587027697 YKRKLARV 8 Unmodified _YKRKLARV_ 0 0 0 nc|ENSG00000141425|Q96P16-3|RPRD1A;ENSG00000141425|ENST00000399022|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A nc|ENSG00000141425|Q96P16-3|RPRD1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3331298828125 2 517.335093 1032.65563 -0.51718 -0.00026756 -0.036054 -1.8652E-05 -0.55324 -0.00028621 517.334867138712 104.1 0.098831 104.05 104.02 104.11 -0.048737 7 4 2 0 0 0 0.81107 1 57815 57815 0 0 1 1401600 78050 5325 52254 53362 90737 90737 0.14061140941953454 YKRKMYVYFIK 11 Unmodified _YKRKMYVYFIK_ 0 0 0 REV__ENSG00000241476|ENST00000337502|SSX2 REV__ENSG00000241476|ENST00000337502|SSX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 770.4329223632812 2 769.93124 1537.84793 1.5087 0.0011616 -0.92804 -0.00071453 0.5807 0.0004471 770.4319722471216 35.969 0.18816 31.776 31.648 31.837 -4.1928 23 11 3 0 0 0 0.30599 1 20983 20983 0.30703 0 1 3556800 + 78051 24451 52255 53363 90738 90738 0.1005167550713395 YKRKSVKF 8 Unmodified _YKRKSVKF_ 0 0 0 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 ENSG00000182150|ENST00000653738|ERCC6L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5508117675781 3 352.550193 1054.62875 0.6107 0.0002153 0.34206 0.00012059 0.95276 0.0003359 352.5504115809675 57.105 0.28238 57.039 56.879 57.161 -0.066036 15 13 2 0 0 0 0.80975 1 31104 31104 0.45834 0 1 2272900 78052 9023 52256 53364 90739 90739 0.10362032330795046 YKRLFFRF 8 Unmodified _YKRLFFRF_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8349609375 2 588.837468 1175.66038 NaN NaN NaN NaN NaN NaN NaN 15.812 1 15.817 15.317 16.317 0.0050564 0 0 0 0.97444 1 7898 7898 0.69038 0 1 78053 7704 52257 53365 90740 90740 0.07958025084735709 YKRLFYLAELE 11 Unmodified _YKRLFYLAELE_ 0 0 0 REV__ENST00000555711.5_1_12:25357018-25357243:+|nuORF REV__ENST00000555711.5_1_12:25357018-25357243:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.3986206054688 2 722.895377 1443.7762 0.98219 0.00071002 0.098653 7.1316E-05 1.0808 0.00078133 722.8951431976656 100.34 0.21201 94.163 94.058 94.27 -6.1757 41 13 4 0 0 0 0.33469 1 67033 67033 31.268 10.854 1 151200000 + 78054 24238 52258 53366 90741 90741 0.07206459354301842 YKRLKLFQFLK 11 Unmodified _YKRLKLFQFLK_ 0 0 0 REV__ENSG00000176907|ENST00000315792|TCIM REV__ENSG00000176907|ENST00000315792|TCIM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 742.461669921875 2 742.461022 1482.90749 0.15108 0.00011217 0.446 0.00033113 0.59707 0.0004433 742.462097030141 97.79 0.41344 97.547 97.313 97.727 -0.24277 40 20 3 0 0 0 0.74203 1 53320 53320 0.30703 0.30703 1 6729900 + 78055 22948 52259 53367 90742 90742 0.18535314512814693 YKRRADRR 8 Unmodified _YKRRADRR_ 0 0 0 REV__ENST00000563893.5_1_16:29874131-29874308:-|nuORF REV__ENST00000563893.5_1_16:29874131-29874308:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.5538635253906 3 374.219729 1119.63736 1.1928 0.00044637 0.22881 8.5627E-05 1.4216 0.000532 374.5539195264325 49.139 0.45084 43.743 43.505 43.956 -5.3961 81 29 4 0 0 0 0.64853 1 30725 30725 17.113 7.039 1 95418000 + 78056 24756 52260 53368 90743 90743 0.08232399019971126 YKRRLLHSAW 10 Unmodified _YKRRLLHSAW_ 0 0 0 REV__ENSG00000102595|ENST00000376747|UGGT2 REV__ENSG00000102595|ENST00000376747|UGGT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 665.3800659179688 2 665.380563 1328.74657 0.83712 0.000557 -1.4013 -0.00093237 -0.56414 -0.00037537 665.3794824070792 80.955 0.3103 80.463 80.251 80.561 -0.49247 31 13 3 0 0 0 0.67033 1 44272 44272 6.2058 0.9089 1 2637700 + 78057 18245 52261 53369 90744 90744 0.09534984919469025 YKRTKKLRK 9 Unmodified _YKRTKKLRK_ 0 0 0 REV__ENST00000555696.5_2_15:93162688-93196373:-|nuORF REV__ENST00000555696.5_2_15:93162688-93196373:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.900634765625 2 610.901131 1219.78771 -0.40066 -0.00024476 -0.62799 -0.00038364 -1.0287 -0.00062841 611.402313826291 103.43 0.14239 103.38 103.28 103.43 -0.04792 9 5 2 0 0 0 0.62242 1 57455 57455 0 0 1 1112300 + 78058 23501 52262 53370 90745 90745 0.1866074595891405 YKRYDRVHS 9 Unmodified _YKRYDRVHS_ 0 0 0 REV__ENSG00000206535|ENST00000383693|LNP1 REV__ENSG00000206535|ENST00000383693|LNP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.81396484375 2 612.317628 1222.6207 0.12389 7.5859E-05 -3.2344 -0.0019805 -3.1105 -0.0019046 612.3154134255545 37.41 0.13672 37.431 37.327 37.464 0.021545 8 5 2 0 0 0 0.21564 1 19859 19859 3.9444 0.3479 1 1082400 + 78059 24257 52263 53371 90746 90746 0.018298533433835473 YKSHCFPESSG 11 Unmodified _YKSHCFPESSG_ 0 0 0 REV__ENSG00000188554|ENST00000590996|NBR1;REV__nc|ENSG00000188554|Q14596-2|NBR1 REV__ENSG00000188554|ENST00000590996|NBR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2662963867188 2 621.266413 1240.51827 -0.076932 -4.7795E-05 0.19052 0.00011836 0.11358 7.0566E-05 621.2663755855762 37.634 0.16788 37.363 37.254 37.422 -0.27133 13 6 3 0 0 0 0.65108 1 19772 19772 8.7454 0 1 3749800 + 78060 23715;29863 52264 53372 90747 90747 -0.09236600510416793 YKTELVCPL 9 Unmodified _YKTELVCPL_ 0 0 0 REV__ENST00000464249.1_1_6:170068793-170070720:-|nuORF REV__ENST00000464249.1_1_6:170068793-170070720:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7845458984375 2 533.286085 1064.55762 0.4344 0.00023166 -0.55201 -0.00029438 -0.11761 -6.2719E-05 533.2862477593378 86.27 0.72237 85.767 85.393 86.115 -0.50318 100 29 6 0 0 0 0.48152 1 47339 47339 8.5933 0.68312 1 9294700 + 78061 27370 52265 53373 90748 90748 0.02792151511107477 YKTIRSFEN 9 Unmodified _YKTIRSFEN_ 0 0 0 ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF ENST00000476232.6_2_1:177993543-178000734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 386.5386962890625 3 386.536501 1156.58767 1.0699 0.00041354 -3.5729 -0.001381 -2.503 -0.0009675 386.53786247886325 46.541 0.32641 46.507 46.329 46.656 -0.033421 35 15 3 0 0 0 0.44883 1 25012 25012 10.151 0 1 8239600 78062 13976 52266 53374 90749 90749 0.01564226500681798 YKTLEPRGYS 10 Unmodified _YKTLEPRGYS_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.2121276855469 3 405.211906 1212.61389 -0.067159 -2.7214E-05 -0.24374 -9.8768E-05 -0.3109 -0.00012598 405.21170788253386 34.207 0.14334 34.236 34.165 34.308 0.028934 10 6 2 0 0 0 0.66287 1 18045 18045 7.0371 0.84524 1 1366700 78063 1885 52267 53375 90750 90750 0.016084956721442722 YKTLEPRGYS 10 Unmodified _YKTLEPRGYS_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-4|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 405.211906 1212.61389 -0.24215 -9.812E-05 0.39918 0.00016175 0.15704 6.3633E-05 405.2121092343439 34.49 0.12148 34.298 34.25 34.371 -0.19131 0.031109 0.00020034 NaN 7.0371 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 3385800 78064 1885 52267 53375 0.016084956721442722 YKTLQVQM 8 Unmodified _YKTLQVQM_ 0 0 0 ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK ENSG00000127080|ENST00000287996|IPPK MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7691955566406 2 505.770603 1009.52665 0.5054 0.00025562 -3.1889 -0.0016129 -2.6835 -0.0013572 505.76861257696856 51.709 0.25373 46.06 45.927 46.181 -5.649 24 15 2 0 0 0 0.21583 1 32533 32533 67.344 5.9864 1 46202000 78065 3986 52268 53376 90751 90751 0.022269981968747743 YKVEYPIMY 9 Oxidation (M) _YKVEYPIM(Oxidation (M))Y_ YKVEYPIM(1)Y YKVEYPIM(65)Y 0 0 1 ENSG00000143198|ENST00000367889|MGST3;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENST00000488688.1_1_1:165619084-165620325:+|nuORF ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.295654296875 2 611.29665 1220.57875 -0.1077 -6.5839E-05 -0.16969 -0.00010373 -0.27739 -0.00016957 611.2962876584916 52.208 0.25069 52.208 52.06 52.311 0 23 10 3 0 0 0 0.018301 1 28881 28881 65.235 45.978 1 2779700 78066 5476 52269 53377 90752 90752 1008 -0.022718831800375483 YKVEYPIMY 9 Oxidation (M) _YKVEYPIM(Oxidation (M))Y_ YKVEYPIM(1)Y YKVEYPIM(48)Y 0 0 1 ENSG00000143198|ENST00000367889|MGST3;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENST00000488688.1_1_1:165619084-165620325:+|nuORF ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2965087890625 2 611.29665 1220.57875 0.45728 0.00027953 -0.09089 -5.5561E-05 0.36639 0.00022397 611.2967963764092 52.786 0.25731 52.334 52.219 52.476 -0.45173 39 12 4 0 0 0 0.044011 1 28522 28522 47.749 36.925 1 11052000 78067 5476 52269 53377 90753 90753 1008 -0.022718831800375483 YKVEYPIMY 9 Oxidation (M) _YKVEYPIM(Oxidation (M))Y_ YKVEYPIM(1)Y YKVEYPIM(100)Y 0 0 1 ENSG00000143198|ENST00000367889|MGST3;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENST00000488688.1_1_1:165619084-165620325:+|nuORF ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.2977294921875 2 611.29665 1220.57875 1.3401 0.0008192 0.28525 0.00017437 1.6254 0.00099358 611.2972129710514 58.487 0.40018 52.412 52.218 52.618 -6.0745 48 21 3 0 0 0 0.0085164 2 37558 37435;37558 99.799 75.778 1 28650000 78068 5476 52269 53377 90754;90755 90755 1008 -0.022718831800375483 YKVEYPIMY 9 Unmodified _YKVEYPIMY_ 0 0 0 ENSG00000143198|ENST00000367889|MGST3;ENST00000477450.1_1_1:165619084-165623023:+|nuORF;ENST00000488688.1_1_1:165619084-165620325:+|nuORF ENSG00000143198|ENST00000367889|MGST3 ENSG00000143198|ENST00000367889|MGST3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.299560546875 2 603.299193 1204.58383 0.10498 6.3337E-05 0.16979 0.00010244 0.27478 0.00016577 603.8015797133262 66.295 0.43635 60.119 59.992 60.428 -6.1757 34 23 2 0 0 0 0.023481 1 43163 43163 60.074 23.568 1 9113200 78069 5476 52269 53378 90756 90756 -0.0102757931740598 YKVFLKYPESL 11 Unmodified _YKVFLKYPESL_ 0 0 0 nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 nc|ENSG00000065000|O14617-4|AP3D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.9287414550781 3 462.927106 1385.75949 0.16317 7.5535E-05 2.6827 0.0012419 2.8459 0.0013174 462.9280527525589 24.378 0.1975 24.378 24.293 24.49 0 21 10 3 0 0 0 0.66968 1 12461 12461 3.5927 0.23695 1 1975200 78070 889 52270 53379 90757 90757 0.08203958468334349 YKVLTAQW 8 Unmodified _YKVLTAQW_ 0 0 0 REV__ENST00000577967.1_2_17:29684253-29684388:+|nuORF REV__ENST00000577967.1_2_17:29684253-29684388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.7796936035156 2 504.779285 1007.54402 0.65569 0.00033098 0.016893 8.527E-06 0.67258 0.0003395 504.7792074505946 52.796 0.24177 52.732 52.603 52.845 -0.063423 28 11 3 0 0 0 0.58902 1 28583 28583 26.884 0.54238 1 9728000 + 78071 29036 52271 53380 90758 90758 0.04054661794179992 YKVNWTFLV 9 Unmodified _YKVNWTFLV_ 0 0 0 ENST00000518345.1_1_8:109254078-109254135:-|nuORF ENST00000518345.1_1_8:109254078-109254135:-|nuORF ENST00000518345.1_1_8:109254078-109254135:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.320556640625 2 585.321317 1168.62808 0.064203 3.7579E-05 -1.1648 -0.00068177 -1.1006 -0.00064419 585.3207321869932 51.344 0.19416 51.29 51.187 51.381 -0.053871 16 9 2 0 0 0 0.27545 1 27807 27807 19.257 4.4187 1 3401800 78072 14689 52272 53381 90759 90759 0.05051192891073697 YKVPESIIR 9 Unmodified _YKVPESIIR_ 0 0 0 REV__ENSG00000185974|ENST00000335678|GRK1 REV__ENSG00000185974|ENST00000335678|GRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.8864440917969 3 368.885241 1103.63389 0.13802 5.0915E-05 2.3196 0.00085568 2.4577 0.00090659 368.88590597856705 51.144 0.57323 50.73 50.376 50.949 -0.41351 58 28 3 0 0 0 0.20428 1 27507 27507 16.566 2.3477 1 3481700 + 78073 23542 52273 53382 90760 90760 0.08622291402753035 YKVPTPHF 8 Unmodified _YKVPTPHF_ 0 0 0 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 ENSG00000112796|ENST00000371383|ENPP5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7668151855469 2 494.766178 987.517802 0.42105 0.00020832 0.25533 0.00012633 0.67638 0.00033465 494.7662240551414 50.986 0.26433 50.932 50.823 51.087 -0.053871 26 12 3 0 0 0 0.67481 1 27580 27580 19.439 0 1 5407500 78074 2923 52274 53383 90761 90761 0.023543926227034717 YKVRWKGY 8 Unmodified _YKVRWKGY_ 0 0 0 ENSG00000196199|ENST00000361479|MPHOSPH8;nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENST00000538078.1_1_12:7592002-7592584:-|nuORF ENSG00000196199|ENST00000361479|MPHOSPH8 ENSG00000196199|ENST00000361479|MPHOSPH8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.6934814453125 2 550.306001 1098.59745 NaN NaN NaN NaN NaN NaN NaN 18.047 1 18.053 17.553 18.553 0.0060463 0 0 0 0.97444 1 9130 9130 0.79363 0 1 78075 9777 52275 53384 90762 90762 0.052094592967023345 YKVSEYAQRF 10 Unmodified _YKVSEYAQRF_ 0 0 0 IMPDH2|p.R355Q|1|0.26|ENSG00000178035|chr3:49025212-49025212|C/T|missense_variant IMPDH2|p.R355Q|1|0.26|ENSG00000178035|chr3:49025212-49025212|C/T|missense_variant IMPDH2|p.R355Q|1|0.26|ENSG00000178035|chr3:49025212-49025212|C/T|missense_variant MSMS AL20221201_MKP_PDAC_01 4 430.8878173828125 3 430.887422 1289.64044 NaN NaN NaN NaN NaN NaN NaN 17.681 1 15.095 14.595 15.595 -2.5866 0 0 0 0.92825 1 9268 9268 3.5871 0 1 78076 15931 52276 53385 90763 90763 0.0072018456346540916 YKVVKYER 8 Unmodified _YKVVKYER_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.2100524902344 3 362.209836 1083.60768 -0.063217 -2.2898E-05 -0.017402 -6.3032E-06 -0.080619 -2.9201E-05 362.21001979326184 32.13 0.20329 32.001 31.891 32.095 -0.12915 10 7 2 0 0 0 0.80722 1 16745 16745 1.4819 0.51963 1 996860 78077 1049;6319 52277 53386 90764 90764 0.06922022231265146 YKWKQSTY 8 Unmodified _YKWKQSTY_ 0 0 0 REV__ENSG00000185070|ENST00000330753|FLRT2 REV__ENSG00000185070|ENST00000330753|FLRT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.280029296875 2 552.279649 1102.54475 0.31958 0.0001765 0.12931 7.1415E-05 0.44889 0.00024792 552.2797735225452 55.716 0.45624 55.238 54.945 55.401 -0.47798 69 21 4 0 0 0 0.72664 1 30133 30133 13.508 13.508 1 41955000 + 78078 23468 52278 53387 90765 90765 -0.0024254355676021078 YKWTLYWS 8 Unmodified _YKWTLYWS_ 0 0 0 REV__ENSG00000085998|ENST00000371984|POMGNT1 REV__ENSG00000085998|ENST00000371984|POMGNT1 MSMS AL20221201_MKP_PDAC_01 4 382.858642578125 3 382.858804 1145.55458 NaN NaN NaN NaN NaN NaN NaN 13.559 1 11.077 10.577 11.577 -2.482 0 0 0 0.97444 1 6871 6871 1.6526 0 1 + 78079 17760 52279 53388 90766 90766 -0.01237355551370456 YKWWQKYQKRK 11 Unmodified _YKWWQKYQKRK_ 0 0 0 nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000482844.5_1_3:3196419-3214524:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF nc|ENSG00000113851|Q96SW2-2|CRBN nc|ENSG00000113851|Q96SW2-2|CRBN MSMS AL20221201_MKP_PDAC_01 4 821.4588623046875 2 821.454259 1640.89397 NaN NaN NaN NaN NaN NaN NaN 87.806 1 81.63 81.13 82.13 -6.1757 0 0 0 0.93893 1 57912 57912 3.2813 3.2813 1 78080 3008 52280 53389 90767 90767 0.09915456733574501 YKWWQKYQKRK 11 Unmodified _YKWWQKYQKRK_ 0 0 0 nc|ENSG00000113851|Q96SW2-2|CRBN;ENSG00000113851|ENST00000231948|CRBN;ENST00000482844.5_1_3:3196419-3214524:-|nuORF;ENST00000491834.5_1_3:3197887-3221343:-|nuORF nc|ENSG00000113851|Q96SW2-2|CRBN nc|ENSG00000113851|Q96SW2-2|CRBN MSMS AL20221201_MKP_PDAC_01 4 821.45751953125 2 821.454259 1640.89397 NaN NaN NaN NaN NaN NaN NaN 88.02 1 81.844 81.344 82.344 -6.1757 0 0 0 0.93893 1 58057 58057 3.2813 3.2813 1 78081 3008 52280 53389 90768 90768 0.09915456733574501 YKYDKKQQQEI 11 Unmodified _YKYDKKQQQEI_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521509.5_1_8:67974087-67974366:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 736.3873291015625 2 735.882998 1469.75144 0.81477 0.00059957 0.65367 0.00048103 1.4684 0.0010806 736.3862031084005 61.805 0.22274 55.629 55.519 55.741 -6.1757 16 11 2 0 0 0 0.37147 1 39867 39867 34.932 17.819 1 16493000 78082 3561 52281 53390 90769 90769 0.03535779480921519 YKYFNTKL 8 Unmodified _YKYFNTKL_ 0 0 0 REV__ENST00000511985.1_1_4:157691583-157731994:-|nuORF REV__ENST00000511985.1_1_4:157691583-157731994:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7894897460938 2 538.792392 1075.57023 -0.13245 -7.1363E-05 -2.8858 -0.0015548 -3.0182 -0.0016262 538.7907752347032 23.232 0.16075 23.232 23.126 23.287 0 12 7 2 0 0 0 0.80624 1 11829 11829 2.8892 0 1 559300 + 78083 28164 52282 53391 90770 90770 0.03546930965649153 YKYKELLL 8 Unmodified _YKYKELLL_ 0 0 0 REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.317626953125 2 535.318243 1068.62193 0.27894 0.00014932 -2.3796 -0.0012739 -2.1007 -0.0011245 535.3167576661917 81.078 0.20593 81.078 80.937 81.143 0 12 9 2 0 0 0 0.81007 1 45020 45020 0.6015 0 1 252160 + 78084 28844 52283 53392 90771 90771 0.09036674659569144 YKYKELLL 8 Unmodified _YKYKELLL_ 0 0 0 REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.318243 1068.62193 0.27894 0.00014932 -2.3796 -0.0012739 -2.1007 -0.0011245 535.3167576661917 81.078 0.20593 81.078 80.937 81.143 0 0.042841 0.00018949 NaN 0.6015 12 9 2 NaN NaN NaN NaN 0 NaN NaN 0 252160 + 78085 28844 52283 53392 0.09036674659569144 YKYKELLL 8 Unmodified _YKYKELLL_ 0 0 0 REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF REV__ENST00000561636.2_1_15:43423309-43423531:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.318243 1068.62193 0.68106 0.00036458 -2.7086 -0.00145 -2.0276 -0.0010854 535.3167199153174 81.485 0.30368 80.993 80.884 81.188 -0.49247 -0.042841 -0.00016273 NaN 0.6015 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 356750 + 78086 28844 52283 53392 0.09036674659569144 YKYLAEQGVF 10 Unmodified _YKYLAEQGVF_ 0 0 0 REV__ENSG00000123165|ENST00000371124|ACTRT1 REV__ENSG00000123165|ENST00000371124|ACTRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3143310546875 2 609.313689 1216.61282 0.3953 0.00024086 -0.11602 -7.069E-05 0.27929 0.00017017 609.3133913858373 63.634 0.30355 63.148 62.992 63.295 -0.48617 40 13 4 0 0 0 0.56348 1 34671 34671 13.042 4.8869 1 9383400 + 78087 19375 52284 53393 90772 90772 0.013182813032244667 YKYLAEQGVF 10 Unmodified _YKYLAEQGVF_ 0 0 0 REV__ENSG00000123165|ENST00000371124|ACTRT1 REV__ENSG00000123165|ENST00000371124|ACTRT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 609.3148193359375 2 609.313689 1216.61282 0.51302 0.00031259 0.41279 0.00025152 0.92581 0.00056411 609.313708083414 63.191 0.26852 63.169 63.049 63.318 -0.021618 33 13 3 0 0 0 0.29752 1 34562 34562 27.629 6.0918 1 9827100 + 78088 19375 52284 53393 90773 90773 0.013182813032244667 YKYLAEQGVF 10 Unmodified _YKYLAEQGVF_ 0 0 0 REV__ENSG00000123165|ENST00000371124|ACTRT1 REV__ENSG00000123165|ENST00000371124|ACTRT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 609.313689 1216.61282 0.3953 0.00024086 -0.11602 -7.069E-05 0.27929 0.00017017 609.3133913858373 63.634 0.30355 63.148 62.992 63.295 -0.48617 -0.01087 -0.0001825 NaN 27.629 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 9383400 + 78089 19375 52284 53393 0.013182813032244667 YKYLAEQGVF 10 Unmodified _YKYLAEQGVF_ 0 0 0 REV__ENSG00000123165|ENST00000371124|ACTRT1 REV__ENSG00000123165|ENST00000371124|ACTRT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 609.313689 1216.61282 0.51302 0.00031259 0.41279 0.00025152 0.92581 0.00056411 609.313708083414 63.191 0.26852 63.169 63.049 63.318 -0.021618 0.01087 0.00046192 NaN 27.629 33 13 3 NaN NaN NaN NaN 0 NaN NaN 0 9827100 + 78090 19375 52284 53393 0.013182813032244667 YKYLRRLFRFR 11 Unmodified _YKYLRRLFRFR_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 809.4765625 2 809.478069 1616.94158 NaN NaN NaN NaN NaN NaN NaN 63.99 1 63.99 63.49 64.49 0 0 0 0 0.9435 1 35688 35688 0 0 1 78091 3125 52285 53394 90774 90774 0.15779155724408156 YKYYLNSSLFG 11 Unmodified _YKYYLNSSLFG_ 0 0 0 REV__ENSG00000108599|ENST00000225737|AKAP10 REV__ENSG00000108599|ENST00000225737|AKAP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 677.8374633789062 2 677.837528 1353.6605 NaN NaN NaN NaN NaN NaN NaN 92.155 1 92.155 91.655 92.655 0 0 0 0 0.9435 1 50958 50958 0 0 1 + 78092 18621 52286 53395 90775 90775 -0.0021806449660743965 YLADDIEV 8 Unmodified _YLADDIEV_ 0 0 0 REV__ENSG00000033178|ENST00000322244|UBA6 REV__ENSG00000033178|ENST00000322244|UBA6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.2300415039062 2 469.22929 936.444028 0.32251 0.00015133 1.3752 0.00064529 1.6977 0.00079662 469.2299339118639 40.98 0.27731 40.677 40.543 40.82 -0.30304 33 13 3 0 0 0 0.61462 1 21665 21665 24.674 0 1 9183500 + 78093 17155 52287 53396 90776 90776 -0.02673620330290305 YLADIFTKL 9 Unmodified _YLADIFTKL_ 0 0 0 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 ENSG00000236287|ENST00000413761|ZBED5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3081665039062 2 542.307875 1082.6012 1.5215 0.00082513 -1.0486 -0.00056866 0.47294 0.00025648 542.3070709719406 82.178 0.24557 82.24 82.125 82.371 0.062004 21 9 3 0 0 0 0.016448 1 45444 45444 82.529 38.757 1 8647000 78094 10645 52288 53397 90777 90777 0.06320084279900584 YLADLYHFV 9 Unmodified _YLADLYHFV_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7894897460938 2 570.78985 1139.56515 NaN NaN NaN NaN NaN NaN NaN 78.1 1 77.618 77.118 78.118 -0.4826 0 0 0 0.57317 1 42773 42773 13.508 1.8676 1 78095 1752 52289 53398 90778 90778 0.0009462710302159394 YLADLYHFV 9 Unmodified _YLADLYHFV_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.7900390625 2 570.78985 1139.56515 0.1585 9.0472E-05 -0.10826 -6.1793E-05 0.050243 2.8678E-05 570.7884981938146 77.531 0.33299 77.581 77.441 77.774 0.05011 24 13 3 0 0 0 0.18465 1 42799 42799 24.674 12.142 1 1233700 78096 1752 52289 53398 90779 90779 0.0009462710302159394 YLADLYHFV 9 Unmodified _YLADLYHFV_ 0 0 0 ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF ENSG00000100092|ENST00000649765|SH3BP1 ENSG00000100092|ENST00000649765|SH3BP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.789794921875 2 570.78985 1139.56515 1.2582 0.00071815 -1.8139 -0.0010353 -0.5557 -0.00031719 570.7884386794835 94.04 0.30882 87.864 87.703 88.012 -6.1757 29 17 2 0 0 0 0.023164 1 62263 62263 60.39 24.345 1 12053000 78097 1752 52289 53398 90780 90780 0.0009462710302159394 YLADPAPQ 8 Unmodified _YLADPAPQ_ 0 0 0 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 REV__nc|ENSG00000159409|Q5SZQ8-3|CELF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 874.4318237304688 1 874.430509 873.423233 0.08627 7.5437E-05 -0.69389 -0.00060675 -0.60762 -0.00053132 874.4298211334499 64.576 0.28774 64.576 64.407 64.694 0 26 14 2 0 0 0 0.55032 2 35964 35964;36064 30.225 7.0764 1 2284800 + 78098 21480 52290 53399 90781;90782 90781 -0.018541659192919724 YLADVTNAL 9 Unmodified _YLADVTNAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 979.512451171875 1 979.509488 978.502212 0.52887 0.00051803 0.1973 0.00019326 0.72617 0.00071129 979.5090145123784 60.325 0.3343 60.325 60.116 60.451 0 22 14 2 0 0 0 0.06187 1 33594 33594 42.095 20.348 1 1248700 78099 4011 52291 53400 90783 90783 0.012100613149868877 YLADVTNAL 9 Unmodified _YLADVTNAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2595825195312 2 490.258382 978.502212 0.62279 0.00030533 0.29905 0.00014661 0.92184 0.00045194 490.2585962891341 60.332 0.29067 60.332 60.137 60.427 0 27 12 3 0 0 0 0.18465 1 33615 33615 24.674 6.5389 1 3849900 78100 4011 52291 53400 90784 90784 0.012100613149868877 YLADVTNAL 9 Unmodified _YLADVTNAL_ 0 0 0 nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF nc|ENSG00000127481|Q5T4S7-3|UBR4 nc|ENSG00000127481|Q5T4S7-3|UBR4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.2583312988281 2 490.258382 978.502212 0.95166 0.00046656 0.15651 7.6731E-05 1.1082 0.00054329 490.25844344791483 68.863 0.40071 62.688 62.455 62.855 -6.1757 36 21 2 0 0 0 0.047196 1 44912 44912 46.021 13.715 1 19195000 78101 4011 52291 53400 90785 90785 0.012100613149868877 YLAEAKKGET 10 Unmodified _YLAEAKKGET_ 0 0 0 ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB ENSG00000100288|ENST00000406938|CHKB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.2957153320312 2 555.295496 1108.57644 -0.17926 -9.9541E-05 1.4742 0.00081863 1.295 0.00071909 555.2960455387775 26.818 0.16937 26.818 26.719 26.889 0 12 7 2 0 0 0 0.6606 1 13817 13817 7.2892 0 1 1049000 78102 1784 52292 53401 90786 90786 0.026494044065202615 YLAESLELRA 10 Unmodified _YLAESLELRA_ 0 0 0 ENSG00000188167|ENST00000342462|TMPPE ENSG00000188167|ENST00000342462|TMPPE ENSG00000188167|ENST00000342462|TMPPE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3179931640625 2 582.816596 1163.61864 -0.053759 -3.1331E-05 -0.20635 -0.00012027 -0.26011 -0.0001516 582.8165996083502 38.708 0.34557 38.422 38.239 38.585 -0.28687 35 16 3 0 0 0 0.24625 2 20348 20348;20455 30.637 6.6827 1 10552000 78103 9635 52293 53402 90787;90788 90787 0.04337379814887754 YLAGEWLG 8 Unmodified _YLAGEWLG_ 0 0 0 REV__ENSG00000167895|ENST00000318430|TMC8 REV__ENSG00000167895|ENST00000318430|TMC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 908.4512939453125 1 908.451245 907.443968 0.0663 6.023E-05 -0.10512 -9.5496E-05 -0.03882 -3.5266E-05 908.4514157156415 84.075 0.35701 83.575 83.418 83.775 -0.49961 26 15 2 0 0 0 0.48233 2 46057 45959;46057 36.466 6.6844 1 1455400 + 78104 22262 52294 53403 90789;90790 90790 -0.013455755396194036 YLAGEWLG 8 Unmodified _YLAGEWLG_ 0 0 0 REV__ENSG00000167895|ENST00000318430|TMC8 REV__ENSG00000167895|ENST00000318430|TMC8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 908.451245 907.443968 0.0663 6.023E-05 -0.10512 -9.5496E-05 -0.03882 -3.5266E-05 908.4514157156415 84.075 0.35701 83.575 83.418 83.775 -0.49961 0 0 NaN 36.466 26 15 2 NaN NaN NaN NaN 0 NaN NaN 0 1455400 + 78105 22262 52294 53403 -0.013455755396194036 YLAGPLGLL 9 Unmodified _YLAGPLGLL_ 0 0 0 REV__ENSG00000108839|ENST00000251535|ALOX12 REV__ENSG00000108839|ENST00000251535|ALOX12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 916.5515747070312 1 916.550231 915.542954 0.70987 0.00065063 0.60545 0.00055492 1.3153 0.0012056 916.5508400790294 94.73 0.78757 88.554 88.233 89.021 -6.1757 69 44 2 0 0 0 0.085487 1 63002 63002 36.466 0 1 9426700 + 78106 18633 52295 53404 90791 90791 0.08180447425286275 YLAMNEEGKL 10 Unmodified _YLAMNEEGKL_ 0 0 0 ENST00000441829.2_9:44302237-44303615:+|nuORF ENST00000441829.2_9:44302237-44303615:+|nuORF ENST00000441829.2_9:44302237-44303615:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.2888793945312 2 584.289356 1166.56416 1.6885 0.00098658 -1.9445 -0.0011362 -0.25602 -0.00014959 584.288163537147 100.44 0.1083 100.4 100.35 100.46 -0.036301 7 3 3 0 0 0 0.65502 1 55814 55814 7.9102 1.5561 1 3688900 78107 13401 52296 53405 90792 90792 -0.012459553281814806 YLAMNEEGKL 10 Unmodified _YLAMNEEGKL_ 0 0 0 ENST00000441829.2_9:44302237-44303615:+|nuORF ENST00000441829.2_9:44302237-44303615:+|nuORF ENST00000441829.2_9:44302237-44303615:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 584.289356 1166.56416 1.6885 0.00098658 -1.9445 -0.0011362 -0.25602 -0.00014959 584.288163537147 100.44 0.1083 100.4 100.35 100.46 -0.036301 0 0 NaN 7.9102 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 3688900 78108 13401 52296 53405 -0.012459553281814806 YLANIEQQHG 10 Unmodified _YLANIEQQHG_ 0 0 0 nc|ENSG00000093000|Q9UKX7-2|NUP50;ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENSG00000093000|ENST00000347635|NUP50;ENST00000469163.1_1_22:45574147-45579448:+|nuORF;ENST00000502634.1_1_5:20304521-20305535:-|nuORF nc|ENSG00000093000|Q9UKX7-2|NUP50 nc|ENSG00000093000|Q9UKX7-2|NUP50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.792236328125 2 586.78837 1171.56219 0.13781 8.0863E-05 2.321 0.0013619 2.4588 0.0014428 586.7907272979379 58.042 0.60952 52.015 51.717 52.327 -6.0275 85 33 4 0 0 0 0.32072 1 37015 37015 26.268 5.8145 1 159780000 78109 1627 52297 53406 90793 90793 -0.016732480217797274 YLAPCSSVSLI 11 Unmodified _YLAPCSSVSLI_ 0 0 0 REV__nc|ENSG00000109689|Q9P246-3|STIM2 REV__nc|ENSG00000109689|Q9P246-3|STIM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8049926757812 2 576.8021 1151.58965 1.2396 0.00071498 -1.3184 -0.00076046 -0.078861 -4.5487E-05 576.8016710085044 87.825 1.2948 81.649 80.982 82.276 -6.1757 258 71 5 0 0 0 0.61011 1 57522 57522 10.824 0 1 235860000 + 78110 18667 52298 53407 90794 90794 0.019915191942573074 YLAPHVRTL 9 Unmodified _YLAPHVRTL_ 0 0 0 ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1 ENSG00000169727|ENST00000578552|GPS1 ENSG00000169727|ENST00000578552|GPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 357.2100524902344 3 357.209948 1068.60801 -0.10383 -3.7088E-05 -0.0063626 -2.2728E-06 -0.11019 -3.936E-05 357.2099233174079 35.146 0.20502 35.174 35.082 35.287 0.027401 15 9 2 0 0 0 0.48396 1 18558 18558 8.4443 3.5473 1 2965500 78111 7907 52299 53408 90795 90795 0.07645441951149223 YLAPVTLEY 9 Unmodified _YLAPVTLEY_ 0 0 0 REV__ENSG00000157110|ENST00000397323|RBPMS REV__ENSG00000157110|ENST00000397323|RBPMS MSMS AL20221201_MKP_PDAC_01 4 534.7854614257812 2 534.784233 1067.55391 NaN NaN NaN NaN NaN NaN NaN 96.633 1 90.457 89.957 90.957 -6.1757 0 0 0 0.20498 1 64041 64041 30.225 3.3412 1 + 78112 21364 52300 53409 90796 90796 0.02283805008892159 YLAQHLFLF 9 Unmodified _YLAQHLFLF_ 0 0 0 REV__ENST00000380548.8_1_9:18770742-18777100:+|nuORF REV__ENST00000380548.8_1_9:18770742-18777100:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 576.3141479492188 2 576.316035 1150.61752 NaN NaN NaN NaN NaN NaN NaN 76.243 1 70.067 69.567 70.567 -6.1757 0 0 0 0.40995 1 49873 49873 19.439 1.304 1 + 78113 26314 52301 53410 90797 90797 0.048232102366455365 YLAQPSSHF 9 Unmodified _YLAQPSSHF_ 0 0 0 REV__ENSG00000204428|ENST00000383237|LY6G5C REV__ENSG00000204428|ENST00000383237|LY6G5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.259765625 2 525.256174 1048.49779 0.65833 0.00034579 -0.50806 -0.00026686 0.15027 7.8931E-05 525.2557136751631 45.549 1.229 40.594 40.086 41.315 -4.9549 209 82 3 0 0 0 0.32871 1 28384 28384 15.847 1.9411 1 173930000 + 78114 24169 52302 53411 90798 90798 -0.024514031078979315 YLARHWLH 8 Unmodified _YLARHWLH_ 0 0 0 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 ENSG00000132744|ENST00000255082|ACY3 MSMS AL20221201_MKP_PDAC_01 4 365.8663330078125 3 365.866404 1094.57738 NaN NaN NaN NaN NaN NaN NaN 14.953 1 12.425 11.925 12.925 -2.5273 0 0 0 0.97348 1 7632 7632 3.9444 0.3479 1 78115 4445 52303 53412 90799 90799 0.03387708356740404 YLASHHRLH 9 Unmodified _YLASHHRLH_ 0 0 0 nc|ENSG00000293317|Q9H963|ZNF702P nc|ENSG00000293317|Q9H963|ZNF702P nc|ENSG00000293317|Q9H963|ZNF702P MULTI-SECPEP AL20221201_MKP_PDAC_01 4 567.3276977539062 2 567.301781 1132.58901 1.0598 0.00060124 -2.0053 -0.0011376 -0.94543 -0.00053634 567.3005504160229 83.994 0.40949 77.818 77.587 77.996 -6.1757 42 21 2 0 0 0 0.20727 1 55137 55137 7.9102 7.9102 1 15346000 78116 16653 52304 53413 90800 90800 0.02801905380079006 YLASQHFVH 9 Unmodified _YLASQHFVH_ 0 0 0 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3;EML4-NTRK3|2|fusion;EML4-NTRK3|1|fusion;nc|ENSG00000148053|Q16620-6|NTRK2;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2 nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000148053|Q16620-6|NTRK2 nc|ENSG00000140538|Q16288-5|NTRK3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8695983886719 3 367.854053 1100.54033 -0.045063 -1.6577E-05 0.75179 0.00027655 0.70672 0.00025997 367.85421707686055 39.406 0.18747 39.109 39.01 39.197 -0.29716 11 8 2 0 0 0 0.21874 1 20826 20826 1.1933 0 1 1741700 78117 5250;5892 52305 53414 90801 90801 -0.0059200797966241225 YLASRYDFI 9 Unmodified _YLASRYDFI_ 0 0 0 nc|ENSG00000074603|Q6V1X1-5|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;ENST00000560048.2_1_15:65743312-65748006:-|nuORF;nc|ENSG00000074603|Q6V1X1-6|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 nc|ENSG00000074603|Q6V1X1-5|DPP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.771484375 2 574.292756 1146.57096 0.23203 0.00013326 -0.074571 -4.2826E-05 0.15746 9.0429E-05 574.2917943799417 65.678 0.2729 65.194 65.041 65.314 -0.48428 18 11 3 0 0 0 0.43515 1 35907 35907 15.847 0 1 781900 78118 1128 52306 53415 90802 90802 0.003537256147183143 YLATDVVVTI 10 Unmodified _YLATDVVVTI_ 0 0 0 REV__ENSG00000188906|ENST00000298910|LRRK2 REV__ENSG00000188906|ENST00000298910|LRRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.311767578125 2 547.310615 1092.60668 0.19201 0.00010509 2.8995 0.001587 3.0916 0.001692 547.312216071661 63.534 0.30709 63.048 62.885 63.192 -0.48617 24 13 2 0 0 0 0.24625 1 34641 34641 30.637 0.79596 1 5685900 + 78119 23742 52307 53416 90803 90803 0.06407763071729278 YLAVESPFL 9 Unmodified _YLAVESPFL_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7803955078125 2 519.778951 1037.54335 0.40293 0.00020944 -0.65178 -0.00033878 -0.24885 -0.00012934 519.7792793510168 86.251 0.43648 85.748 85.493 85.929 -0.50318 55 17 4 0 0 0 0.068777 1 47177 47177 40.449 2.2974 1 2550200 78120 2701 52308 53417 90804 90804 0.026078223544800494 YLAVESPFL 9 Unmodified _YLAVESPFL_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7781982421875 2 519.778951 1037.54335 1.1574 0.00060159 -0.41055 -0.0002134 0.74684 0.00038819 519.7789232055849 94.639 0.86899 88.463 88.135 89.004 -6.1757 80 49 2 0 0 0 0.013472 2 62610 62610;62873 70.716 28.621 1 9973900 78121 2701 52308 53417 90805;90806 90805 0.026078223544800494 YLAVESPFL 9 Unmodified _YLAVESPFL_ 0 0 0 nc|ENSG00000110090|P50416-2|CPT1A;ENSG00000110090|ENST00000265641|CPT1A nc|ENSG00000110090|P50416-2|CPT1A nc|ENSG00000110090|P50416-2|CPT1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.778951 1037.54335 0.3633 0.00018884 -2.867 -0.0014902 -2.5037 -0.0013014 520.2784602152389 88.068 0.21022 88.068 87.953 88.163 0 -0.19763 -0.0020724 NaN 70.716 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 306930 78122 2701 52308 53417 0.026078223544800494 YLAWSCGGFW 10 Unmodified _YLAWSCGGFW_ 0 0 0 REV__ENSG00000104783|ENST00000648319|KCNN4 REV__ENSG00000104783|ENST00000648319|KCNN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.2618408203125 2 595.260402 1188.50625 0.7725 0.00045984 2.2286 0.0013266 3.0011 0.0017864 595.2617542270019 61.656 0.40652 55.48 55.248 55.654 -6.1757 37 20 3 0 0 0 0.47869 1 39808 39808 20.454 3.5113 1 31827000 + 78123 18372 52309 53418 90807 90807 -0.08046172462945833 YLCASWDGDF 10 Unmodified _YLCASWDGDF_ 0 0 0 REV__ENST00000225726.9_1_17:61841449-61841527:-|nuORF REV__ENST00000225726.9_1_17:61841449-61841527:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.4315185546875 2 588.736957 1175.45936 NaN NaN NaN NaN NaN NaN NaN 75.304 1 74.827 74.327 75.327 -0.47714 0 0 0 0.96627 1 41220 41220 4.3292 0 1 + 78124 24780 52310 53419 90808 90808 -0.12135076804747769 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 851.3950805664062 1 851.396767 850.38949 0.036417 3.1005E-05 0.22183 0.00018887 0.25825 0.00021987 851.3968154305982 104.33 0.039314 104.33 104.31 104.35 0 26 11 3 0 0 0 0.80975 1 57438 57438 0.79363 0 1 12467000 + 78125 17659 52311 53420 90809 90809 -0.04168910682687965 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 851.397705078125 1 851.396767 850.38949 -0.20442 -0.00017404 0.68302 0.00058152 0.4786 0.00040748 851.3973271600621 104.37 0.02729 104.27 104.25 104.28 -0.096809 17 9 2 0 0 0 0.80975 1 56862 56862 0.79363 0 1 2695200 + 78126 17659 52311 53420 90810 90810 -0.04168910682687965 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 851.397705078125 1 851.396767 850.38949 -0.37321 -0.00031775 0.93708 0.00079782 0.56387 0.00048008 851.3977944394786 104.35 0.056168 104.3 104.25 104.31 -0.048737 7 3 3 0 0 0 0.80975 1 57937 57937 0.79363 0 1 10932000 + 78127 17659 52311 53420 90811 90811 -0.04168910682687965 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 851.396767 850.38949 0.036417 3.1005E-05 0.22183 0.00018887 0.25825 0.00021987 851.3968154305982 104.33 0.039314 104.33 104.31 104.35 0 0.03117 -0.00018019 NaN 0.79363 26 11 3 NaN NaN NaN NaN 0 NaN NaN 0 12467000 + 78128 17659 52311 53420 -0.04168910682687965 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 851.396767 850.38949 -0.20442 -0.00017404 0.68302 0.00058152 0.4786 0.00040748 851.3973271600621 104.37 0.02729 104.27 104.25 104.28 -0.096809 -0.031258 0.00021246 NaN 0.79363 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2695200 + 78129 17659 52311 53420 -0.04168910682687965 YLCGPELG 8 Unmodified _YLCGPELG_ 0 0 0 REV__ENSG00000080031|ENST00000376350|PTPRH REV__ENSG00000080031|ENST00000376350|PTPRH MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1 851.396767 850.38949 -0.37321 -0.00031775 0.93708 0.00079782 0.56387 0.00048008 851.3977944394786 104.35 0.056168 104.3 104.25 104.31 -0.048737 8.7647E-05 0.00042877 NaN 0.79363 7 3 3 NaN NaN NaN NaN 0 NaN NaN 0 10932000 + 78130 17659 52311 53420 -0.04168910682687965 YLCNDTLIF 9 Unmodified _YLCNDTLIF_ 0 0 0 REV__ENSG00000105443|ENST00000452733|CYTH2 REV__ENSG00000105443|ENST00000452733|CYTH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2686767578125 2 551.267893 1100.52123 1.2008 0.00066195 -0.5906 -0.00032558 0.61018 0.00033637 551.2678718629066 86.573 0.6481 80.397 80.103 80.751 -6.1757 86 34 3 0 0 0 0.41742 1 57247 57247 11.64 0 1 44629000 + 78131 18426 52312 53421 90812 90812 -0.025007253856074385 YLCQMRCF 8 Unmodified _YLCQMRCF_ 0 0 0 REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF REV__ENST00000368655.4_1_1:153782382-153782649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.22900390625 2 532.229733 1062.44491 0.25961 0.00013817 0.80136 0.00042651 1.061 0.00056468 532.2297182945827 59.468 0.25529 58.977 58.855 59.11 -0.49079 26 11 3 0 0 0 0.80044 1 32352 32352 6.3541 1.5981 1 1964200 + 78132 26015 52313 53422 90813 90813 -0.08381143758242615 YLCQNGRCI 9 Unmodified _YLCQNGRCI_ 0 0 0 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 ENSG00000166147|ENST00000316623|FBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2489013671875 2 535.249511 1068.48447 0.7313 0.00039143 -0.48461 -0.00025939 0.24669 0.00013204 535.2494278386089 75.501 0.40466 69.325 69.138 69.543 -6.1757 49 21 3 0 0 0 0.30562 1 49355 49355 16.942 5.302 1 11704000 78133 7437 52314 53423 90814 90814 -0.047033004831519065 YLCSEYLLGN 10 Unmodified _YLCSEYLLGN_ 0 0 0 ENST00000513120.2_1_4:8605677-8612970:+|nuORF;ENST00000514302.5_1_4:8602857-8612970:+|nuORF;nc|ENSG00000109625|Q66K79-3|CPZ;nc|ENSG00000109625|Q66K79-2|CPZ;ENSG00000109625|ENST00000360986|CPZ ENST00000513120.2_1_4:8605677-8612970:+|nuORF ENST00000513120.2_1_4:8605677-8612970:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 391.9830627441406 3 392.18648 1173.53761 0.38044 0.0001492 2.2293 0.0008743 2.6097 0.0010235 392.1873457305091 26.072 0.38736 23.121 22.894 23.281 -2.9511 31 24 2 0 0 0 0.23325 1 14258 14258 5.7834 0.38072 1 11302000 78134 2661 52315 53424 90815 90815 -0.04221644219501286 YLCSYSSSYS 10 Unmodified _YLCSYSSSYS_ 0 0 0 ENST00000370986.8_1_1:68153492-68153543:+|nuORF ENST00000370986.8_1_1:68153492-68153543:+|nuORF ENST00000370986.8_1_1:68153492-68153543:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 580.2355346679688 2 580.234247 1158.45394 NaN NaN NaN NaN NaN NaN NaN 24.743 1 21.86 21.36 22.36 -2.8831 0 0 0 0.54588 1 13491 13491 24.021 11.489 1 78135 12349 52316 53425 90816 90816 -0.11894800387199211 YLCTADNQCPN 11 Unmodified _YLCTADNQCPN_ 0 0 0 REV__NOTCH1|p.D469Y|1|0.19|ENSG00000148400|chr9:136517788-136517788|C/A|missense_variant REV__NOTCH1|p.D469Y|1|0.19|ENSG00000148400|chr9:136517788-136517788|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2500610351562 2 621.249905 1240.48526 0.101 6.2746E-05 -0.90434 -0.00056182 -0.80334 -0.00049907 621.2494751774601 70.592 0.59612 70.592 70.122 70.718 0 40 26 2 0 0 0 0.71341 1 39329 39329 2.9952 0.10602 1 479890 + 78136 30058 52317 53426 90817 90817 -0.12536550624759002 YLCTLDYQRMY 11 Unmodified _YLCTLDYQRMY_ 0 0 0 nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1 nc|ENSG00000099204|O14639-2|ABLIM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.7668762207031 3 490.224829 1467.65266 0.11429 5.6029E-05 -0.5659 -0.00027742 -0.45161 -0.00022139 490.22448934379776 47.022 0.48775 47.022 46.781 47.269 0 69 23 4 0 0 0 0.30598 1 25606 25606 0.094841 0 1 32710000 78137 1686 52318 53427 90818 90818 -0.062462830800313895 YLCWSPRT 8 Unmodified _YLCWSPRT_ 0 0 0 REV__ENST00000539777.5_1_1:168054037-168054433:-|nuORF REV__ENST00000539777.5_1_1:168054037-168054433:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2385864257812 2 513.247295 1024.48004 0.43768 0.00022464 -0.20773 -0.00010662 0.22995 0.00011802 513.2471723544851 83.047 0.36649 82.55 82.331 82.698 -0.49751 45 13 5 0 0 0 0.80232 1 45470 45470 5.2307 0.47466 1 4433400 + 78138 28572 52319 53428 90819 90819 -0.03122441634423012 YLCYEVERL 9 Carbamidomethyl (C) _YLC(Carbamidomethyl (C))YEVERL_ YLC(1)YEVERL YLC(66)YEVERL 0 1 0 ENSG00000179750|ENST00000333467|APOBEC3B;nc|ENSG00000179750|Q9UH17-3|APOBEC3B;nc|ENSG00000128383|P31941-2|APOBEC3A;ENSG00000128383|ENST00000249116|APOBEC3A ENSG00000179750|ENST00000333467|APOBEC3B ENSG00000179750|ENST00000333467|APOBEC3B MSMS AL20221201_MKP_PDAC_01 4 622.8030395507812 2 622.802631 1243.59071 NaN NaN NaN NaN NaN NaN NaN 59.655 1 53.541 53.041 54.041 -6.1147 0 0 0 0.030047 1 38317 38317 66.457 26.507 1 78139 8856 52320 53429 90820 90820 841 -0.021342664368376063 YLDAAQQNL 9 Unmodified _YLDAAQQNL_ 0 0 0 ENST00000425869.1_22:16634899-16650863:+|nuORF ENST00000425869.1_22:16634899-16650863:+|nuORF ENST00000425869.1_22:16634899-16650863:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2599487304688 2 518.258914 1034.50327 NaN NaN NaN NaN NaN NaN NaN 62.252 1 62.252 61.752 62.752 0 0 0 0 0.13852 1 34717 34717 38.151 9.0696 1 78140 13169 52321 53430 90821 90821 -0.012597243161053484 YLDAVEYFPDE 11 Unmodified _YLDAVEYFPDE_ 0 0 0 ENSG00000119720|ENST00000354366|NRDE2;ENST00000557732.1_1_14:90744682-90745540:-|nuORF ENSG00000119720|ENST00000354366|NRDE2 ENSG00000119720|ENST00000354366|NRDE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.7982788085938 2 680.800808 1359.58706 -0.39015 -0.00026562 -1.2218 -0.0008318 -1.612 -0.0010974 680.8001799352271 77.088 0.31097 76.607 76.455 76.766 -0.48146 40 13 4 0 0 0 0.71036 1 42163 42163 3.2813 0.54611 1 4220600 78141 3464 52322 53431 90822 90822 -0.07834657729722494 YLDEAHSI 8 Unmodified _YLDEAHSI_ 0 0 0 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 ENSG00000100596|ENST00000216484|SPTLC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2265014648438 2 474.227082 946.439611 -0.86918 -0.00041219 0.92036 0.00043646 0.051184 2.4273E-05 474.2276277995239 32.731 0.17218 32.731 32.639 32.811 0 12 8 2 0 0 0 0.50586 1 17137 17137 34.187 0 1 1114800 78142 1848 52323 53432 90823 90823 -0.0357508475318582 YLDEDTIYHL 10 Unmodified _YLDEDTIYHL_ 0 0 0 ENSG00000168906|ENST00000306434|MAT2A;nc|ENSG00000168906|P31153-2|MAT2A ENSG00000168906|ENST00000306434|MAT2A ENSG00000168906|ENST00000306434|MAT2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.3038330078125 2 641.303518 1280.59248 -0.0534 -3.4245E-05 0.49474 0.00031728 0.44134 0.00028303 641.3043221176188 61.684 0.20215 61.684 61.572 61.775 0 12 8 2 0 0 0 0.6606 1 34394 34394 7.2892 2.3922 1 547640 78143 7813 52324 53433 90824 90824 -0.03658934147210857 YLDEIPPK 8 Unmodified _YLDEIPPK_ 0 0 0 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7632751464844 2 487.7633 973.512048 0.59614 0.00029077 -0.48022 -0.00023423 0.11592 5.654E-05 487.76307796722125 89.29 0.20021 88.788 88.688 88.889 -0.50171 9 8 2 0 0 0 0.74163 1 48841 48841 13.508 5.5977 1 259040 78144 9241 52325 53434 90825 90825 0.024232493203726335 YLDETQQF 8 Unmodified _YLDETQQF_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7404174804688 2 522.237647 1042.46074 0.61982 0.00032369 1.4422 0.00075316 2.062 0.0010769 522.2382778052647 66.996 0.52755 66.996 66.839 67.366 0 49 23 3 0 0 0 0.74163 1 37308 37308 13.508 3.3245 1 3753600 + 78145 19369 52326 53435 90826 90826 -0.05879119444330172 YLDETQQF 8 Unmodified _YLDETQQF_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7404174804688 2 522.237647 1042.46074 0.61982 0.00032369 1.4422 0.00075316 2.062 0.0010769 522.2382778052647 66.996 0.52755 66.996 66.839 67.366 0 49 23 3 0 0 0 8.7369 1 37308 37308 13.508 3.3245 1 3753600 + 78146 19369 52326 53435 90827 90827 -0.05879119444330172 YLDFKLLME 9 Unmodified _YLDFKLLME_ 0 0 0 nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF nc|ENSG00000164190|Q6KC79-2|NIPBL nc|ENSG00000164190|Q6KC79-2|NIPBL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.2082824707031 3 391.207104 1170.59948 NaN NaN NaN NaN NaN NaN NaN 38.31 1 38.31 37.81 38.81 0 0 0 0 0.7453 1 20452 20452 4.897 0.36815 1 78147 7161 52327 53436 90828 90828 0.02100707199633689 YLDFMQNGNY 10 Unmodified _YLDFMQNGNY_ 0 0 0 ENSG00000172123|ENST00000304905|SLFN12 ENSG00000172123|ENST00000304905|SLFN12 ENSG00000172123|ENST00000304905|SLFN12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.1807250976562 3 422.181618 1263.52302 -0.1689 -7.1308E-05 -2.0983 -0.00088588 -2.2672 -0.00095719 422.18073756187783 40.376 0.33949 40.376 40.17 40.51 0 34 16 4 0 0 0 0.67459 1 21660 21660 5.4027 1.5264 1 8295600 78148 8184 52328 53437 90829 90829 -0.09819716367610454 YLDGTWSL 8 Unmodified _YLDGTWSL_ 0 0 0 KIF26B-C1orf101|2|fusion;ENST00000479506.1_1_1:245517197-245533964:+|nuORF;KIF26B-C1orf101|1|fusion;ENSG00000162849|ENST00000407071|KIF26B KIF26B-C1orf101|2|fusion KIF26B-C1orf101|2|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 954.4574584960938 1 954.456724 953.449448 -0.24929 -0.00023793 0.37023 0.00035337 0.12094 0.00011544 954.4569664902778 64.733 0.28928 64.733 64.63 64.919 0 23 12 2 0 0 0 0.74163 1 36184 36184 13.508 4.1604 1 1770700 78149 15940 52329 53438 90830 90830 -0.02913896747816125 YLDIIHTYMEV 11 Unmodified _YLDIIHTYMEV_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.8407592773438 2 698.844496 1395.67444 0.40686 0.00028433 -1.1347 -0.00079299 -0.72785 -0.00050866 698.8436025365428 67.501 0.44962 67.018 66.716 67.165 -0.48218 39 19 3 0 0 0 0.6889 1 36783 36783 5.2969 0 1 2277200 78150 6165 52330 53439 90831 90831 -0.007571550597958776 YLDKDLKQY 9 Unmodified _YLDKDLKQY_ 0 0 0 ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17;ENST00000428400.5_1_X:47082893-47085639:+|nuORF;ENST00000522234.5_1_X:47078210-47085639:+|nuORF;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000102225|Q00536-2|CDK16 ENSG00000059758|ENST00000261211|CDK17 ENSG00000059758|ENST00000261211|CDK17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 395.8761901855469 3 395.876523 1184.60774 0.039866 1.5782E-05 1.1759 0.0004655 1.2157 0.00048128 395.8769369432759 42.369 0.29776 42.062 41.92 42.218 -0.30682 21 14 2 0 0 0 0.29507 1 22494 22494 17.443 1.704 1 26616000 78151 819 52331 53440 90832 90832 0.022819774406116267 YLDKFIRL 8 Unmodified _YLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 534.3157958984375 2 534.316035 1066.61752 0.32985 0.00017624 -0.50059 -0.00026747 -0.17074 -9.1229E-05 534.3157097859797 67.437 0.29126 67.455 67.318 67.609 0.018028 32 14 3 0 0 0 0.056242 1 36997 36997 131.27 60.134 1 13011000 78152 4179 52332 53441 90833 90833 0.08687210236666942 YLDKFIRL 8 Unmodified _YLDKFIRL_ 0 0 0 ENSG00000130119|ENST00000360845|GNL3L;ENST00000462279.5_1_5:60188520-60189039:-|nuORF ENSG00000130119|ENST00000360845|GNL3L ENSG00000130119|ENST00000360845|GNL3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.3157958984375 2 534.316035 1066.61752 0.73222 0.00039124 -0.27717 -0.0001481 0.45505 0.00024314 534.3160741300666 92.514 0.29916 86.338 86.235 86.534 -6.1757 35 17 3 0 0 0 0.07965 2 61147 61147;61271 107.19 36.471 1 18216000 78153 4179 52332 53441 90834;90835 90834 0.08687210236666942 YLDKLAELSF 10 Unmodified _YLDKLAELSF_ 0 0 0 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 REV__nc|ENSG00000078177|Q86UW6-2|N4BP2 MSMS AL20221201_MKP_PDAC_01 4 400.2142333984375 3 400.216657 1197.62814 NaN NaN NaN NaN NaN NaN NaN 50.256 1 44.717 44.217 45.217 -5.5391 0 0 0 0.8634 1 31503 31503 9.544 5.6981 1 + 78154 17623 52333 53442 90836 90836 0.037231481004027955 YLDKYEWF 8 Unmodified _YLDKYEWF_ 0 0 0 ENSG00000198108|ENST00000305031|CHSY3;ENSG00000131873|ENST00000254190|CHSY1 ENSG00000198108|ENST00000305031|CHSY3;ENSG00000131873|ENST00000254190|CHSY1 ENSG00000131873|ENST00000254190|CHSY1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.2734375 2 582.274032 1162.53351 -0.12356 -7.1947E-05 -0.95123 -0.00055388 -1.0748 -0.00062583 582.2734953205397 101.58 0.17513 101.53 101.46 101.64 -0.045853 11 5 4 0 0 0 8.7369 1 56465 56465 0.79363 0 1 6051000 78155 4357;10051 52334 53443 90837 90837 -0.041253656509070424 YLDLAGWDL 9 Unmodified _YLDLAGWDL_ 0 0 0 ENST00000418987.2_1_9:103493819-103494230:+|nuORF ENST00000418987.2_1_9:103493819-103494230:+|nuORF ENST00000418987.2_1_9:103493819-103494230:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7980346679688 2 533.266207 1064.51786 0.45101 0.00024051 1.1051 0.00058931 1.5561 0.00082982 533.2674278563568 71.99 0.40224 72.029 71.727 72.129 0.039024 28 19 2 0 0 0 0.18521 1 39593 39593 16.942 0 1 2559900 78156 13082 52335 53444 90838 90838 -0.01181652167952052 YLDLDKITVE 10 Unmodified _YLDLDKITVE_ 0 0 0 nc|ENSG00000111247|Q96B01-3|RAD51AP1;ENSG00000111247|ENST00000352618|RAD51AP1;nc|ENSG00000111247|Q96B01|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 nc|ENSG00000111247|Q96B01-3|RAD51AP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.8240356445312 2 604.824086 1207.63362 NaN NaN NaN NaN NaN NaN NaN 88.028 1 88.028 87.528 88.528 0 0 0 0 1.0061 1 48732 48732 0 0 1 78157 2772 52336 53445 90839 90839 0.03810826892208752 YLDLEKVAVGI 11 Unmodified _YLDLEKVAVGI_ 0 0 0 REV__nc|ENSG00000141905|P08651-4|NFIC REV__nc|ENSG00000141905|P08651-4|NFIC MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.5694580078125 3 407.23594 1218.68599 0.56257 0.0002291 -1.916 -0.00078028 -1.3535 -0.00055118 407.2350424609774 38.749 0.20504 34.298 34.223 34.428 -4.4509 17 12 2 0 0 0 0.557 1 22915 22915 13.519 1.2911 1 7710500 + 78158 20555 52337 53446 90840 90840 0.08539410025832694 YLDLLTHL 8 Unmodified _YLDLLTHL_ 0 0 0 REV__nc|ENSG00000147044|O14936-3|CASK REV__nc|ENSG00000147044|O14936-3|CASK MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7787170410156 2 494.279118 986.543683 1.1401 0.00056352 -0.83442 -0.00041244 0.30567 0.00015109 494.2789622061346 61.471 0.60641 55.323 55.076 55.682 -6.1478 79 30 3 0 0 0 0.65867 1 39783 39783 20.871 1.4322 1 127250000 + 78159 20860 52338 53447 90841 90841 0.049872420743326984 YLDMCSYML 9 Unmodified _YLDMCSYML_ 0 0 0 REV__ENST00000280200.8_3_18:67531437-67531521:-|nuORF REV__ENST00000280200.8_3_18:67531437-67531521:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.1204223632812 2 569.734514 1137.45447 0.37177 0.00021181 -0.0989 -5.6347E-05 0.27287 0.00015546 569.7343733986266 99.837 0.12969 93.661 93.574 93.703 -6.1757 13 9 2 0 0 0 0.18118 1 66541 66541 18.135 13.806 1 26372000 + 78160 25186 52339 53448 90842 90842 -0.10875420263369051 YLDMLQYFQ 9 Unmodified _YLDMLQYFQ_ 0 0 0 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 REV__nc|ENSG00000171804|Q6ZQQ6|WDR87 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7879638671875 2 610.78645 1219.55835 NaN NaN NaN NaN NaN NaN NaN 75.7 1 75.223 74.723 75.723 -0.47714 0 0 0 0.7243 1 41440 41440 8.5933 0 1 + 78161 22602 52340 53449 90843 90843 -0.04265053839844768 YLDNEVIHF 9 Unmodified _YLDNEVIHF_ 0 0 0 REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2835083007812 2 575.282389 1148.55022 0.38014 0.00021869 -1.2123 -0.0006974 -0.83214 -0.00047872 575.2816803944364 65.804 0.28323 65.804 65.597 65.88 0 24 13 2 0 0 0 0.46577 2 36627 36627;36736 9.3474 0 1 2485200 + 78162 20901 52341 53450 90844;90845 90844 -0.018108647649796694 YLDNEVIHF 9 Unmodified _YLDNEVIHF_ 0 0 0 REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.748779296875 2 575.282389 1148.55022 0.38014 0.00021869 -1.2123 -0.0006974 -0.83214 -0.00047872 575.2816803944364 65.804 0.28323 65.804 65.597 65.88 0 24 13 2 0 0 0 0.203 1 36601 36601 9.3474 0 1 2485200 + 78163 20901 52341 53450 90846 90846 -0.018108647649796694 YLDNEVIHF 9 Unmodified _YLDNEVIHF_ 0 0 0 REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2833251953125 2 575.282389 1148.55022 0.27817 0.00016003 -0.97473 -0.00056075 -0.69656 -0.00040072 575.2823647708867 66.295 0.54735 65.812 65.668 66.216 -0.48324 37 28 2 0 0 0 0.37804 1 36201 36201 13.508 1.8676 1 3406000 + 78164 20901 52341 53450 90847 90847 -0.018108647649796694 YLDNEVIHF 9 Unmodified _YLDNEVIHF_ 0 0 0 REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF REV__ENST00000522987.1_1_8:80870573-80942483:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 575.282389 1148.55022 0.27817 0.00016003 -0.97473 -0.00056075 -0.69656 -0.00040072 575.2823647708867 66.295 0.54735 65.812 65.668 66.216 -0.48324 0.0038838 0.00023361 NaN 13.508 37 28 2 NaN NaN NaN NaN 0 NaN NaN 0 3406000 + 78165 20901 52341 53450 -0.018108647649796694 YLDNGVVFV 9 Unmodified _YLDNGVVFV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.270751953125 2 513.26875 1024.52295 0.47553 0.00024408 -0.19425 -9.9702E-05 0.28128 0.00014437 513.2686850300408 74.46 0.44099 74.46 74.252 74.693 0 37 19 3 0 0 0 0.30562 1 41393 41393 16.942 4.4107 1 2091200 78166 7694 52342 53451 90848 90848 0.011666516946661432 YLDNGVVFV 9 Unmodified _YLDNGVVFV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 513.2689819335938 2 513.26875 1024.52295 0.6319 0.00032433 0.44288 0.00022732 1.0748 0.00055165 513.2689451512948 74.899 0.37614 74.422 74.206 74.582 -0.47714 31 15 3 0 0 0 0.06187 1 41019 41019 42.095 23.96 1 4238000 78167 7694 52342 53451 90849 90849 0.011666516946661432 YLDNGVVFV 9 Unmodified _YLDNGVVFV_ 0 0 0 ENSG00000167986|ENST00000301764|DDB1;ENST00000539712.5_1_11:61089040-61094332:-|nuORF;ENST00000545930.5_1_11:61082914-61091715:-|nuORF ENSG00000167986|ENST00000301764|DDB1 ENSG00000167986|ENST00000301764|DDB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.2688598632812 2 513.26875 1024.52295 0.52759 0.00027079 -0.71315 -0.00036604 -0.18556 -9.5244E-05 513.2684928382243 82.678 0.57893 76.503 76.25 76.829 -6.1757 61 32 2 0 0 0 0.095405 1 54369 54369 34.102 13.231 1 32608000 78168 7694 52342 53451 90850 90850 0.011666516946661432 YLDNLLVRF 9 Unmodified _YLDNLLVRF_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3331298828125 2 576.824224 1151.63389 0.72423 0.00041775 -0.97767 -0.00056394 -0.25344 -0.00014619 576.8236628377031 72.59 0.29214 72.114 71.938 72.23 -0.47609 34 13 3 0 0 0 0.39863 1 39651 39651 12.532 2.4576 1 5004700 78169 3604 52343 53452 90851 90851 0.06414291402734307 YLDNLLVRF 9 Unmodified _YLDNLLVRF_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.8248901367188 2 576.824224 1151.63389 -0.13595 -7.8419E-05 0.71264 0.00041107 0.57669 0.00033265 576.8247345976383 76.904 0.37118 76.424 76.235 76.606 -0.47945 41 16 4 0 0 0 0.41742 1 42072 42072 11.64 4.3511 1 1885700 78170 3604 52343 53452 90852 90852 0.06414291402734307 YLDNLLVRF 9 Unmodified _YLDNLLVRF_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8245239257812 2 576.824224 1151.63389 0.61325 0.00035374 -1.822 -0.001051 -1.2087 -0.00069723 576.823928671997 72.034 0.46234 72.073 71.768 72.23 0.039024 60 22 4 0 0 0 0.2001 1 39634 39634 23.148 7.3012 1 30334000 78171 3604 52343 53452 90853 90853 0.06414291402734307 YLDNLLVRF 9 Unmodified _YLDNLLVRF_ 0 0 0 ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA ENSG00000121879|ENST00000263967|PIK3CA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8226318359375 2 576.824224 1151.63389 0.37951 0.00021891 -0.31969 -0.0001844 0.059817 3.4504E-05 576.8239851407678 76.34 0.38503 76.388 76.204 76.589 0.047951 52 15 4 0 0 0 0.06294 2 42059 42059;42162 41.84 9.0539 1 43699000 78172 3604 52343 53452 90854;90855 90854 0.06414291402734307 YLDPAQRGV 9 Unmodified _YLDPAQRGV_ 0 0 0 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7697448730469 2 509.769448 1017.52434 0.4182 0.00021319 -0.40087 -0.00020435 0.017335 8.8371E-06 509.76942854752707 31.368 0.24829 31.368 31.234 31.482 0 24 11 3 0 0 0 0.024882 1 16308 16308 58.679 20.528 1 3136300 78173 4250 52344 53453 90856 90856 0.01628285783431238 YLDPAQRGV 9 Unmodified _YLDPAQRGV_ 0 0 0 nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 nc|ENSG00000130731|Q96S19-3|METTL26 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7689514160156 2 509.769448 1017.52434 1.2034 0.00061344 -0.38999 -0.0001988 0.81337 0.00041463 509.7690000791301 35.942 0.31467 31.749 31.584 31.899 -4.1928 36 19 2 0 0 0 0.024882 1 20877 20877 58.679 11.758 1 13498000 78174 4250 52344 53453 90857 90857 0.01628285783431238 YLDQERIF 8 Unmodified _YLDQERIF_ 0 0 0 REV__ENSG00000183060|ENST00000684762|LYSMD4 REV__ENSG00000183060|ENST00000684762|LYSMD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.2764282226562 2 542.277106 1082.53966 0.82013 0.00044474 -0.22321 -0.00012104 0.59692 0.0003237 542.2767910696303 60.047 0.42443 53.933 53.713 54.138 -6.1147 40 22 2 0 0 0 0.44629 1 38710 38710 39.957 0.0076237 1 33715000 + 78175 23316 52345 53454 90858 90858 0.0016915258061089844 YLDQLIRCL 9 Unmodified _YLDQLIRCL_ 0 0 0 ENSG00000204480|ENST00000376101|PRAMEF19 ENSG00000204480|ENST00000376101|PRAMEF19 ENSG00000204480|ENST00000376101|PRAMEF19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.315185546875 2 568.810259 1135.60597 0.23274 0.00013239 1.2826 0.00072956 1.5154 0.00086195 568.8115007457437 39.797 0.36398 39.5 39.371 39.735 -0.29716 38 17 3 0 0 0 0.21302 1 21084 21084 5.7319 1.4026 1 5066600 78176 10292 52346 53455 90859 90859 0.04358645151023666 YLDREVIPDF 10 Unmodified _YLDREVIPDF_ 0 0 0 ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000103184|ENST00000251170|SEC14L5 ENSG00000103184|ENST00000251170|SEC14L5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.267578125 2 633.821878 1265.6292 0.1361 8.6265E-05 -1.0905 -0.00069121 -0.95444 -0.00060495 633.8208815214842 63.39 0.34781 63.39 63.219 63.567 0 49 18 3 0 0 0 0.69377 1 35438 35438 3.5965 0 1 10985000 78177 2109 52347 53456 90860 90860 0.00701362469317246 YLDRKRWL 8 Unmodified _YLDRKRWL_ 0 0 0 REV__ENSG00000198576|ENST00000356613|ARC REV__ENSG00000198576|ENST00000356613|ARC MSMS AL20221201_MKP_PDAC_01 4 383.89013671875 3 383.889097 1148.64546 NaN NaN NaN NaN NaN NaN NaN 96.856 1 90.681 90.181 91.181 -6.1757 0 0 0 0.9489 1 64187 64187 10.824 1.8477 1 + 78178 24027 52348 53457 90861 90861 0.07708533216737123 YLDRVLSLLL 10 Unmodified _YLDRVLSLLL_ 0 0 0 REV__nc|ENSG00000166821|O75192-2|PEX11A REV__nc|ENSG00000166821|O75192-2|PEX11A MSMS AL20221201_MKP_PDAC_01 4 402.2491455078125 3 402.24818 1203.72271 NaN NaN NaN NaN NaN NaN NaN 33.29 1 29.305 28.805 29.805 -3.9853 0 0 0 0.97556 1 19082 19082 3.3196 0.58445 1 + 78179 22153 52349 53458 90862 90862 0.12899706642451747 YLDRVRSL 8 Unmodified _YLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2924499511719 2 511.293091 1020.57163 0.2504 0.00012803 -0.20574 -0.0001052 0.044651 2.283E-05 511.29279467613134 37.53 0.17666 37.53 37.428 37.604 0 14 9 2 0 0 0 0.18544 1 19980 19980 75.761 0 1 2752800 78180 2759;13562 52350 53459 90863 90863 0.06216565054421608 YLDRVRSL 8 Unmodified _YLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2920837402344 2 511.293091 1020.57163 -0.17679 -9.0391E-05 -0.22336 -0.0001142 -0.40015 -0.0002046 511.29299114003624 37.855 0.27831 37.584 37.44 37.719 -0.27133 38 13 3 0 0 0 0.16757 2 19871 19871;19984 82.529 0 1 49964000 78181 2759;13562 52350 53459 90864;90865 90864 0.06216565054421608 YLDRVRSL 8 Unmodified _YLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.2935791015625 2 511.293091 1020.57163 0.18857 9.6413E-05 -0.17413 -8.9032E-05 0.014435 7.3806E-06 511.29285499122494 37.477 0.22142 37.497 37.374 37.595 0.020187 29 10 4 0 0 0 0.16757 1 19868 19868 82.529 0 1 19113000 78182 2759;13562 52350 53459 90866 90866 0.06216565054421608 YLDRVRSL 8 Unmodified _YLDRVRSL_ 0 0 0 ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182929095-182929497:-|nuORF ENSG00000111057|ENST00000388835|KRT18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2933349609375 2 511.293091 1020.57163 0.78413 0.00040092 -0.40858 -0.0002089 0.37555 0.00019201 511.29289581006606 42.474 0.58316 37.79 37.559 38.142 -4.6846 109 37 4 0 0 0 0.088981 2 25580 25580;25712 103.42 0 1 235930000 78183 2759;13562 52350 53459 90867;90868 90867 0.06216565054421608 YLDTHFRL 8 Unmodified _YLDTHFRL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2819213867188 2 532.779816 1063.54508 0.32551 0.00017343 0.80496 0.00042886 1.1305 0.00060229 532.7803889254676 62.884 0.3677 62.862 62.602 62.969 -0.021614 51 18 4 0 0 0 8.7369 1 34325 34325 71.134 26.727 1 31360000 78184 3760 52351 53460 90869 90869 0.01584876163087756 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 707.846435546875 2 707.846081 1413.67761 0.12547 8.8811E-05 -0.32781 -0.00023204 -0.20234 -0.00014323 707.8454848029628 59.317 0.3422 59.317 59.123 59.465 0 40 14 4 0 0 0 0.53952 1 33108 33108 14.405 0 1 24736000 + 78185 17831 52352 53461 90870 90870 -0.012681886814334575 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.8479614257812 2 707.846081 1413.67761 0.46376 0.00032827 0.50454 0.00035714 0.9683 0.00068541 707.8465022888766 52.332 0.21509 51.898 51.77 51.985 -0.43367 26 10 3 0 0 0 0.178 1 28234 28234 33.445 8.4539 1 5381500 + 78186 17831 52352 53461 90871 90871 -0.012681886814334575 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 707.8453369140625 2 707.846081 1413.67761 0.11772 8.3325E-05 -0.067504 -4.7782E-05 0.050213 3.5543E-05 707.8459237172046 59.911 0.45966 59.42 59.193 59.652 -0.49079 91 22 6 0 0 0 0.15156 1 32524 32524 36.506 5.2379 1 224840000 + 78187 17831 52352 53461 90872 90872 -0.012681886814334575 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 707.846435546875 2 707.846081 1413.67761 0.41272 0.00029214 0.01211 8.5721E-06 0.42483 0.00030071 707.8460078503634 59.531 0.36195 59.478 59.293 59.655 -0.053062 58 18 4 0 0 0 0.15156 1 32490 32490 36.506 11.515 1 36608000 + 78188 17831 52352 53461 90873 90873 -0.012681886814334575 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MSMS AL20221201_MKP_PDAC_01 4 708.3477172851562 2 707.846081 1413.67761 0.48749 0.00034507 0.12149 8.5994E-05 0.60898 0.00043106 707.8460816550099 66.114 0.73275 59.938 59.709 60.441 -6.1757 123 41 4 0 0 0 0.15156 1 43250 43250 36.506 12.716 1 91130000 + 78189 17831 52352 53461 90874 90874 -0.012681886814334575 YLDTILNEDYR 11 Unmodified _YLDTILNEDYR_ 0 0 0 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 REV__nc|ENSG00000089101|Q8NHU2-4|CFAP61 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 707.846081 1413.67761 0.46376 0.00032827 0.50454 0.00035714 0.9683 0.00068541 707.8465022888766 52.332 0.21509 51.898 51.77 51.985 -0.43367 0 0 NaN 33.445 26 10 3 NaN NaN NaN NaN 0 NaN NaN 0 5381500 + 78190 17831 52352 53461 -0.012681886814334575 YLDTSNQKQWL 11 Unmodified _YLDTSNQKQWL_ 0 0 0 ENST00000261893.8_1_15:63433639-63433687:+|nuORF ENST00000261893.8_1_15:63433639-63433687:+|nuORF ENST00000261893.8_1_15:63433639-63433687:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 698.34814453125 2 698.348791 1394.68303 0.41031 0.00028654 -1.345 -0.00093931 -0.93473 -0.00065277 698.3482022353147 57.383 0.31913 56.893 56.645 56.964 -0.48974 23 14 3 0 0 0 0.66968 1 31169 31169 7.1017 1.8048 1 1396000 78191 11255 52353 53462 90875 90875 0.0014753490104340017 YLDYHMEKY 9 Unmodified _YLDYHMEKY_ 0 0 0 ENST00000299353.6_1_10:104622682-104660454:+|nuORF;ENSG00000214435|ENST00000369880|AS3MT ENST00000299353.6_1_10:104622682-104660454:+|nuORF ENST00000299353.6_1_10:104622682-104660454:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.2841186523438 2 631.281531 1260.54851 3.9223 0.002476 -0.62204 -0.00039269 3.3002 0.0020834 631.2813250968832 98.506 0.36708 98.478 98.299 98.666 -0.028282 39 13 4 0 0 0 0.28047 1 54696 54696 18.135 2.2878 1 2077100 78192 10494 52354 53463 90876 90876 -0.07134241845210454 YLDYVEKYYH 10 Unmodified _YLDYVEKYYH_ 0 0 0 nc|ENSG00000197641|Q9UIV8-2|SERPINB13;ENSG00000197641|ENST00000344731|SERPINB13 nc|ENSG00000197641|Q9UIV8-2|SERPINB13 nc|ENSG00000197641|Q9UIV8-2|SERPINB13 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5548095703125 3 464.887199 1391.63977 -0.22628 -0.0001052 -0.14413 -6.7006E-05 -0.37042 -0.0001722 464.8868448900702 37.513 0.19283 37.242 37.157 37.35 -0.27133 10 7 2 0 0 0 0.23986 1 19722 19722 2.086 0 1 2139600 78193 9986 52355 53464 90877 90877 -0.040386548762171515 YLEALANRERE 11 Unmodified _YLEALANRERE_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 681.8592529296875 2 682.351865 1362.68918 1.6296 0.001112 -2.8785 -0.0019642 -1.2489 -0.00085221 682.3498177661785 96.363 0.16626 90.187 90.104 90.27 -6.1757 15 9 3 0 0 0 0.28583 1 63807 63807 16.566 1.3174 1 10844000 78194 10914 52356 53465 90878 90878 0.022340531325426127 YLEALRQFHYF 11 Unmodified _YLEALRQFHYF_ 0 0 0 REV__nc|ENSG00000163913|Q9HBG6-11|IFT122 REV__nc|ENSG00000163913|Q9HBG6-11|IFT122 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2533874511719 3 496.254105 1485.74048 -0.17552 -8.7101E-05 -1.1059 -0.00054881 -1.2814 -0.00063591 496.25366276636106 22.815 0.5485 22.815 22.653 23.202 0 119 29 6 0 0 0 0.71036 1 11652 11652 1.3296 0 1 259720000 + 78195 21833 52357 53466 90879 90879 0.017044218972841918 YLECWKDMI 9 Unmodified _YLECWKDMI_ 0 0 0 ENST00000520817.5_1_8:41367772-41367976:+|nuORF ENST00000520817.5_1_8:41367772-41367976:+|nuORF ENST00000520817.5_1_8:41367772-41367976:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.7760620117188 2 600.775028 1199.5355 0.50555 0.00030372 -0.6387 -0.00038371 -0.13315 -7.9995E-05 600.7747171886724 64.789 0.23404 64.304 64.169 64.403 -0.48512 14 10 2 0 0 0 0.46577 1 35359 35359 9.3474 1.4373 1 857690 78196 14735 52358 53467 90880 90880 -0.05628396228962629 YLEDDLDLI 9 Unmodified _YLEDDLDLI_ 0 0 0 REV__nc|ENSG00000179915|Q9ULB1-2|NRXN1 REV__nc|ENSG00000179915|Q9ULB1-2|NRXN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.7770385742188 2 554.774062 1107.53357 0.85818 0.0004761 -0.54085 -0.00030005 0.31733 0.00017605 554.7739781974985 75.95 0.89826 69.775 69.194 70.093 -6.1757 165 48 5 0 0 0 0.46577 1 49783 49783 9.3474 0.75416 1 56748000 + 78197 23127 52359 53468 90881 90881 -0.015894104415792754 YLEEEDITEE 10 Unmodified _YLEEEDITEE_ 0 0 0 ENSG00000166012|ENST00000448108|TAF1D ENSG00000166012|ENST00000448108|TAF1D ENSG00000166012|ENST00000448108|TAF1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.8505249023438 3 423.850479 1268.52961 -0.83044 -0.00035198 1.0401 0.00044084 0.20965 8.8861E-05 423.85088310730885 77.947 0.53885 77.464 77.121 77.66 -0.4826 58 37 2 0 0 0 0.66569 1 42680 42680 3.5871 0.5148 1 6481100 78198 7422 52360 53469 90882 90882 -0.09391544725917811 YLEEFPDGFY 10 Unmodified _YLEEFPDGFY_ 0 0 0 ENSG00000136925|ENST00000341170|TSTD2;nc|ENSG00000136925|Q5T7W7-2|TSTD2;ENST00000375165.5_1_9:100366979-100380093:-|nuORF ENSG00000136925|ENST00000341170|TSTD2 ENSG00000136925|ENST00000341170|TSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.2832641601562 2 640.279512 1278.54447 0.43607 0.00027921 -1.3381 -0.00085675 -0.90201 -0.00057754 640.2791271867515 82.038 0.21428 81.543 81.415 81.629 -0.4952 14 7 3 0 0 0 0.65502 1 44916 44916 7.9102 1.187 1 789050 78199 4881 52361 53470 90883 90883 -0.08366008067287112 YLEEKLHIY 9 Unmodified _YLEEKLHIY_ 0 0 0 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28;ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 nc|ENSG00000214944|Q8N1W1-4|ARHGEF28 MSMS AL20221201_MKP_PDAC_01 4 403.2171630859375 3 403.216768 1206.62847 NaN NaN NaN NaN NaN NaN NaN 82.122 1 75.946 75.446 76.446 -6.1757 0 0 0 0.54015 1 53935 53935 9.3831 0.63772 1 78200 10514 52362 53471 90884 90884 0.03342567820300246 YLEERAMRQF 10 Oxidation (M) _YLEERAM(Oxidation (M))RQF_ YLEERAM(1)RQF YLEERAM(120)RQF 0 0 1 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 679.830322265625 2 679.829711 1357.64487 0.39358 0.00026757 -0.63488 -0.00043161 -0.2413 -0.00016404 679.829041170549 26.188 0.30919 23.237 23.049 23.358 -2.9511 29 17 2 0 0 0 0.00018404 1 14349 14349 117.84 92.847 1 9941600 78201 3013 52363 53472 90885 90885 519 -0.019646742852728494 YLEERAMRQF 10 Unmodified _YLEERAMRQF_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.8322143554688 2 671.832254 1341.64996 0.59565 0.00040018 -0.67047 -0.00045044 -0.074818 -5.0265E-05 671.8321831503664 35.151 0.33932 31.056 30.869 31.208 -4.0951 46 19 3 0 0 0 2.5634E-07 2 20291 20291;20436 139.78 90.228 1 29469000 78202 3013 52363 53473 90886;90887 90886 -0.007203704226640184 YLEETIGTAK 10 Unmodified _YLEETIGTAK_ 0 0 0 REV__ENSG00000276231|ENST00000619866|PIK3R6 REV__ENSG00000276231|ENST00000619866|PIK3R6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8670043945312 3 375.532645 1123.5761 0.3438 0.00012911 -0.11737 -4.4078E-05 0.22643 8.503E-05 375.53269484360226 57.1 0.30136 56.615 56.453 56.754 -0.48554 30 13 3 0 0 0 0.52888 1 31000 31000 8.9762 0 1 10535000 + 78203 24657 52364 53474 90888 90888 0.019259846866816588 YLEFNKYKYT 10 Unmodified _YLEFNKYKYT_ 0 0 0 nc|ENSG00000133393|Q96NB1-2|CEP20;ENSG00000133393|ENST00000255759|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 nc|ENSG00000133393|Q96NB1-2|CEP20 MSMS AL20221201_MKP_PDAC_01 4 684.8436279296875 2 684.845353 1367.67615 NaN NaN NaN NaN NaN NaN NaN 30.418 1 26.921 26.421 27.421 -3.497 0 0 0 0.88176 1 17168 17168 8.7454 0.58988 1 78204 4511 52365 53475 90889 90889 0.007022220204817131 YLEGIANQVKL 11 Unmodified _YLEGIANQVKL_ 0 0 0 REV__nc|ENSG00000214198|Q6P2S7|TTC41P REV__nc|ENSG00000214198|Q6P2S7|TTC41P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.23681640625 3 416.571322 1246.69214 NaN NaN NaN NaN NaN NaN NaN 27.721 1 27.751 27.251 28.251 0.029564 0 0 0 0.77961 1 14414 14414 7.0371 2.9205 1 + 78205 29937 52366 53476 90890 90890 0.0786592825736534 YLEGSSYEMF 10 Unmodified _YLEGSSYEMF_ 0 0 0 THEMIS|p.I33S|1|0.17|ENSG00000172673|chr6:127855182-127855182|A/C|missense_variant THEMIS|p.I33S|1|0.17|ENSG00000172673|chr6:127855182-127855182|A/C|missense_variant THEMIS|p.I33S|1|0.17|ENSG00000172673|chr6:127855182-127855182|A/C|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 613.2569580078125 2 613.257722 1224.50089 0.54432 0.00033381 0.16097 9.8717E-05 0.70529 0.00043253 613.2577193265072 89.835 0.38503 89.333 89.127 89.512 -0.50171 25 19 2 0 0 0 0.69064 1 49113 49113 3.9444 0.3479 1 602580 78206 30191 52367 53477 90891 90891 -0.10237940836077541 YLEIYWETD 9 Unmodified _YLEIYWETD_ 0 0 0 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 ENSG00000203697|ENST00000366872|CAPN8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2781982421875 2 616.279512 1230.54447 -0.047836 -2.948E-05 0.61973 0.00038192 0.57189 0.00035244 616.2799201033858 76.823 0.39021 76.343 76.216 76.606 -0.47945 26 17 2 0 0 0 0.58865 1 42145 42145 2.0598 0.21551 1 745480 78207 10219 52368 53478 90892 90892 -0.06158008067291121 YLEKAIKI 8 Unmodified _YLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.3046875 2 489.305136 976.595718 0.19869 9.7222E-05 -0.057956 -2.8358E-05 0.14074 6.8864E-05 489.30517888202166 45.588 0.17838 45.264 45.159 45.337 -0.32425 16 9 2 0 0 0 0.11214 1 24352 24352 96.111 10.839 1 15519000 78208 9567 52369 53479 90893 90893 0.10648405488075241 YLEKAIKI 8 Unmodified _YLEKAIKI_ 0 0 0 ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7 ENST00000565455.5_1_16:8987857-9023250:-|nuORF ENST00000565455.5_1_16:8987857-9023250:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.3058776855469 2 489.305136 976.595718 1.0454 0.00051151 0.23138 0.00011321 1.2768 0.00062473 489.3052845408436 50.535 0.48517 44.995 44.695 45.18 -5.5391 63 30 3 0 0 0 0.078938 2 31667 31667;31803 110.67 10.876 1 67881000 78209 9567 52369 53479 90894;90895 90894 0.10648405488075241 YLEKDDEFM 9 Unmodified _YLEKDDEFM_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 595.2574462890625 2 595.257722 1188.50089 0.33785 0.00020111 -0.013459 -8.0116E-06 0.32439 0.00019309 595.2577119315978 53.432 0.41097 53.432 53.195 53.606 0 44 18 3 0 0 0 0.43463 1 29567 29567 10.824 0 1 5108800 + 78210 20368 52370 53480 90896 90896 -0.08581940836074864 YLEKECVL 8 Unmodified _YLEKECVL_ 0 0 0 REV__ENSG00000204952|ENST00000378079|FBXO47 REV__ENSG00000204952|ENST00000378079|FBXO47 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2535705566406 2 498.757161 995.499769 1.2877 0.00064227 -0.97208 -0.00048483 0.31566 0.00015744 498.7570630825609 88.356 0.78821 82.18 81.939 82.727 -6.1757 89 43 3 0 0 0 0.64035 1 58563 58563 22.453 6.6055 1 60042000 + 78211 24207 52371 53481 90897 90897 0.0018388958568493763 YLEKFQNL 8 Unmodified _YLEKFQNL_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1;ENST00000572632.1_1_16:3569992-3580585:+|nuORF;nc|ENSG00000103351|Q96AJ1-2|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7816772460938 2 527.782025 1053.5495 1.1008 0.00058097 -1.9919 -0.0010513 -0.89117 -0.00047034 527.780962809794 89.944 0.39252 83.769 83.508 83.9 -6.1757 35 21 2 0 0 0 0.23628 1 59340 59340 64.236 9.4628 1 7405400 78212 2130 52372 53482 90898 90898 0.024863405860060084 YLEKLKTI 8 Unmodified _YLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.3104858398438 2 504.310418 1006.60628 -0.030221 -1.5241E-05 -0.15314 -7.723E-05 -0.18336 -9.247E-05 504.3100561796005 49.113 0.24318 48.742 48.597 48.84 -0.37172 27 11 3 0 0 0 0.17329 1 26421 26421 80.676 34.976 1 4910000 78213 16412 52373 53483 90899 90899 0.10324388142532825 YLEKLKTI 8 Unmodified _YLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.3106384277344 2 504.310418 1006.60628 0.3407 0.00017182 -0.57353 -0.00028924 -0.23282 -0.00011742 504.3100673927247 48.769 0.29407 48.725 48.573 48.867 -0.04369 38 14 3 0 0 0 0.099528 1 26305 26305 100.09 46.687 1 14615000 78214 16412 52373 53483 90900 90900 0.10324388142532825 YLEKLKTI 8 Unmodified _YLEKLKTI_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;PLEC|p.L1356Wfs*69|1|0.18|ENSG00000178209|chr8:143927510-143927510|A/-|frameshift_variant nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.310546875 2 504.310418 1006.60628 1.2598 0.00063535 -1.4721 -0.00074237 -0.21221 -0.00010702 504.3098705994973 54.15 0.46532 48.285 48.066 48.531 -5.8653 65 26 3 0 0 0 0.13532 1 34230 34230 90.135 34.632 1 48563000 78215 16412 52373 53483 90901 90901 0.10324388142532825 YLEKVRTL 8 Unmodified _YLEKVRTL_ 0 0 0 CON__P35900;ENSG00000171431|ENST00000167588|KRT20 CON__P35900 CON__P35900 MSMS AL20221201_MKP_PDAC_01 4 511.3062133789062 2 511.305667 1020.59678 NaN NaN NaN NaN NaN NaN NaN 44.046 1 39.281 38.781 39.781 -4.7648 0 0 0 0.068755 1 26837 26837 99.799 21.65 1 + 78216 176 52374 53484 90902 90902 0.08730619856999056 YLELLGLQL 9 Unmodified _YLELLGLQL_ 0 0 0 REV__ENST00000380050.7_1_7:90838503-90838662:+|nuORF REV__ENST00000380050.7_1_7:90838503-90838662:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7468872070312 2 531.3157 1060.61685 0.077324 4.1083E-05 1.2967 0.00068895 1.374 0.00073003 531.3163526508578 70.319 0.19788 69.84 69.716 69.914 -0.47903 18 8 3 0 0 0 0.37804 1 38404 38404 13.508 0 1 1167300 + 78217 26305 52375 53485 90903 90903 0.0889637079694694 YLELLKDSL 9 Unmodified _YLELLKDSL_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000463640.1_1_10:94238531-94239198:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MULTI-SECPEP AL20221201_MKP_PDAC_01 4 547.7393798828125 2 547.310615 1092.60668 1.2536 0.00068612 0.81568 0.00044643 2.0693 0.0011326 547.3104371007485 63.918 0.54675 57.743 57.506 58.053 -6.1757 71 29 3 0 0 0 0.19205 1 41209 41209 6.2058 0 1 42186000 78218 3478 52376 53486 90904 90904 0.0640776307170654 YLELRDLF 8 Unmodified _YLELRDLF_ 0 0 0 REV__nc|ENSG00000101333|Q15147-2|PLCB4 REV__nc|ENSG00000101333|Q15147-2|PLCB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7940063476562 2 534.78985 1067.56515 1.1959 0.00063957 -1.6963 -0.00090717 -0.5004 -0.00026761 535.2902449326205 63.842 1.1045 57.666 57.226 58.331 -6.1757 88 60 2 0 0 0 0.64853 1 41128 41128 21.747 1.293 1 63791000 + 78219 18160 52377 53487 90905 90905 0.03406627103026949 YLEMKDIAI 9 Unmodified _YLEMKDIAI_ 0 0 0 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2;ENSG00000196072|ENST00000370372|BLOC1S2 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.8629455566406 3 365.863337 1094.56818 -0.52475 -0.00019199 -1.7703 -0.0006477 -2.2951 -0.00083969 365.8627005510825 18.298 0.10907 18.298 18.243 18.352 0 20 16 2 0 0 0 0.52844 1 9081 9081 5.7319 2.7366 1 777630 78220 9753 52378 53488 90906 90906 0.024681341655195865 YLEMKDIAI 9 Unmodified _YLEMKDIAI_ 0 0 0 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2;ENSG00000196072|ENST00000370372|BLOC1S2 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2 nc|ENSG00000196072|Q6QNY1-2|BLOC1S2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 365.863337 1094.56818 0.015944 5.8334E-06 -1.884 -0.00068928 -1.868 -0.00068345 365.86244515339826 18.303 0.072601 18.309 18.247 18.319 0.0060463 0.025945 0.00025815 NaN 5.7319 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 358120 78221 9753 52378 53488 0.024681341655195865 YLEMLLEY 8 Unmodified _YLEMLLEY_ 0 0 0 ENSG00000183431|ENST00000373019|SF3A3;ENST00000470585.5_1_1:38445118-38455637:-|nuORF ENSG00000183431|ENST00000373019|SF3A3 ENSG00000183431|ENST00000373019|SF3A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2670288085938 2 537.264819 1072.51508 0.16647 8.9439E-05 -0.79733 -0.00042838 -0.63086 -0.00033894 537.26409825715 65.319 0.50452 65.319 65.143 65.648 0 48 19 4 0 0 0 0.79669 1 36397 36397 8.5933 0 1 3428300 78222 9149 52379 53489 90907 90907 -0.018272436171173467 YLENALKL 8 Unmodified _YLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.279052734375 2 482.279118 962.543683 -0.24073 -0.0001161 0.82309 0.00039696 0.58235 0.00028086 482.279489326133 56.066 0.20848 56.066 55.953 56.162 0 15 9 2 0 0 0 0.52622 1 31167 31167 32.305 3.8186 1 1616900 78223 6889;9141;10440 52380 53490 90908 90908 0.060912420743079565 YLENALKL 8 Unmodified _YLENALKL_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7 ENSG00000162654|ENST00000355754|GBP4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 482.279118 962.543683 -0.77895 -0.00037567 1.4074 0.00067878 0.62849 0.00030311 482.27970566966627 56.4 0.097569 55.915 55.843 55.941 -0.48554 -0.075594 0.00051125 NaN 32.305 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1741900 78224 6889;9141;10440 52380 53490 0.060912420743079565 YLENGKETL 9 Unmodified _YLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7756958007812 2 533.774396 1065.53424 0.79439 0.00042403 0.74728 0.00039888 1.5417 0.00082291 533.774141415453 34.355 0.46608 30.26 29.972 30.438 -4.0951 36 26 2 0 0 0 0.040683 1 19771 19771 49.554 5.696 1 21734000 78225 10298;10315;10398;16517 52381 53491 90909 90909 0.004094289981594557 YLENGKETL 9 Unmodified _YLENGKETL_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204642|P30511-2|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.774396 1065.53424 -0.47559 -0.00025386 -0.10912 -5.8248E-05 -0.58472 -0.00031211 533.7745020661823 30.095 0.20773 30.095 29.994 30.201 0 -0.16408 -2.5402E-05 NaN 49.554 30 9 4 NaN NaN NaN NaN 0 NaN NaN 0 5738000 78226 10298;10315;10398;16517 52381 53491 0.004094289981594557 YLEPGYPL 8 Unmodified _YLEPGYPL_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 951.4817504882812 1 951.482211 950.474934 0.35374 0.00033658 -1.6137 -0.0015354 -1.26 -0.0011989 951.4804904113101 90.879 0.39928 90.384 90.187 90.586 -0.49457 63 29 3 0 0 0 0.21786 2 49618 49618;49726 67.035 19.441 1 4504700 + 78227 29527 52382 53492 90910;90911 90910 -0.0022842222538201895 YLEPGYPL 8 Unmodified _YLEPGYPL_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.483154296875 1 951.482211 950.474934 0.67015 0.00063764 -1.0772 -0.0010249 -0.407 -0.00038725 951.4819165283978 99.27 0.4404 93.095 92.94 93.38 -6.1757 47 27 2 0 0 0 0.17881 1 66114 66114 78.445 18.371 1 50195000 + 78228 29527 52382 53492 90912 90912 -0.0022842222538201895 YLEPGYPL 8 Unmodified _YLEPGYPL_ 0 0 0 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 REV__nc|ENSG00000090006|Q8N2S1-3|LTBP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 951.482211 950.474934 0.35374 0.00033658 -1.6137 -0.0015354 -1.26 -0.0011989 951.4804904113101 90.879 0.39928 90.384 90.187 90.586 -0.49457 0 0 NaN 67.035 63 29 3 NaN NaN NaN NaN 0 NaN NaN 0 4504700 + 78229 29527 52382 53492 -0.0022842222538201895 YLEQYRIDFEQ 11 Unmodified _YLEQYRIDFEQ_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 752.3605346679688 2 752.359356 1502.70416 0.25589 0.00019252 1.523 0.0011458 1.7789 0.0013383 752.8619201750919 53.362 0.28146 53.362 53.244 53.525 0 30 12 4 0 0 0 0.68427 1 29561 29561 5.7319 0.83484 1 6679400 78230 2647 52383 53493 90913 90913 -0.02708499790105634 YLEQYRIDFEQ 11 Unmodified _YLEQYRIDFEQ_ 0 0 0 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 ENSG00000109436|ENST00000442267|TBC1D9 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 752.359356 1502.70416 0.094964 7.1447E-05 -0.032898 -2.4751E-05 0.062066 4.6696E-05 752.8604040946979 54.011 0.10131 53.544 53.466 53.567 -0.46664 0.091226 -0.0021603 NaN 5.7319 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1320300 78231 2647 52383 53493 -0.02708499790105634 YLEREDFFF 9 Unmodified _YLEREDFFF_ 0 0 0 nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1;nc|ENSG00000182979|Q13330-2|MTA1;ENST00000494026.1_1_14:105915673-105921005:+|nuORF nc|ENSG00000182979|Q13330-3|MTA1 nc|ENSG00000182979|Q13330-3|MTA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.296142578125 2 633.295496 1264.57644 -0.59683 -0.00037797 1.3001 0.00082337 0.7033 0.0004454 633.2962106555274 101.25 0.082092 101.2 101.16 101.24 -0.04216 8 2 4 0 0 0 0.51218 1 56268 56268 6.7232 0 1 8043300 78232 9106 52384 53494 90914 90914 -0.04526595593483762 YLERFHAI 8 Unmodified _YLERFHAI_ 0 0 0 REV__nc|ENSG00000144559|Q96BW9|TAMM41 REV__nc|ENSG00000144559|Q96BW9|TAMM41 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7815551757812 2 524.782359 1047.55016 0.47565 0.00024961 -0.68939 -0.00036178 -0.21374 -0.00011217 524.7818316253697 86.815 0.16351 86.815 86.745 86.909 0 16 10 2 0 0 0 0.80044 1 48069 48069 6.3541 0 1 357950 + 78233 29679 52385 53495 90915 90915 0.028291800257193245 YLERFRREG 9 Unmodified _YLERFRREG_ 0 0 0 ENSG00000105647|ENST00000222254|PIK3R2;ENST00000426902.5_1_19:18273817-18280101:+|nuORF ENSG00000105647|ENST00000222254|PIK3R2 ENSG00000105647|ENST00000222254|PIK3R2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.5674133300781 3 409.219395 1224.63635 0.61627 0.00025219 -0.89576 -0.00036656 -0.27949 -0.00011437 409.55311689223214 28.937 0.17876 28.875 28.763 28.941 -0.062159 12 7 3 0 0 0 0.21641 1 14985 14985 4.1895 0 1 3345400 78234 2346 52386 53496 90916 90916 0.03302139860420539 YLERTPLCAI 10 Unmodified _YLERTPLCAI_ 0 0 0 nc|ENSG00000128513|Q9NUX5-2|POT1;ENSG00000128513|ENST00000357628|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 nc|ENSG00000128513|Q9NUX5-2|POT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.5455627441406 3 393.54612 1177.61653 1.2949 0.00050958 -0.66762 -0.00026274 0.62724 0.00024685 393.5458808238719 42.67 0.87995 37.986 37.648 38.528 -4.6846 218 56 6 0 0 0 0.54684 1 25628 25628 12.175 0 1 1277900000 78235 4067 52387 53497 90917 90917 0.03482627805442462 YLERYQRF 8 Unmodified _YLERYQRF_ 0 0 0 ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2 ENST00000420716.2_1_3:195591054-195595875:-|nuORF ENST00000420716.2_1_3:195591054-195595875:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.8026733398438 2 587.803823 1173.59309 0.60369 0.00035485 -1.7444 -0.0010254 -1.1408 -0.00067054 587.8027340092162 82.089 0.2489 81.593 81.471 81.72 -0.4952 11 9 2 0 0 0 0.80143 1 44967 44967 5.7604 0.028577 1 323820 78236 844 52388 53498 90918 90918 0.013239500831332407 YLESEVEETL 10 Unmodified _YLESEVEETL_ 0 0 0 REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF REV__ENST00000553745.5_1_14:74753379-74769587:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.2880859375 2 606.287534 1210.56051 0.41114 0.00024927 3.1983 0.0019391 3.6095 0.0021884 606.2890519150478 101.6 0.19111 95.427 95.291 95.483 -6.1757 13 9 2 0 0 0 0.19662 1 68197 68197 34.102 1.3168 1 20830000 + 78237 19203 52389 53499 90919 90919 -0.036343466210155384 YLETVTQFGF 10 Unmodified _YLETVTQFGF_ 0 0 0 ENSG00000171714|ENST00000324559|ANO5 ENSG00000171714|ENST00000324559|ANO5 ENSG00000171714|ENST00000324559|ANO5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.248779296875 2 602.797872 1203.58119 -0.092042 -5.5483E-05 -1.1214 -0.00067599 -1.2135 -0.00073147 603.2987731741606 78.016 0.15744 78.016 77.943 78.101 0 10 6 2 0 0 0 0.23981 1 43393 43393 1.8442 0.77278 1 350590 78238 8129 52390 53500 90920 90920 -0.012457114507014921 YLETYFKDL 9 Unmodified _YLETYFKDL_ 0 0 0 REV__ENSG00000147873|ENST00000610521|IFNA5 REV__ENSG00000147873|ENST00000610521|IFNA5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.3005981445312 2 596.300247 1190.58594 0.41286 0.00024619 0.58736 0.00035024 1.0002 0.00059643 596.300496161468 99.34 0.14372 99.182 99.094 99.238 -0.15751 10 4 3 0 0 0 0.37804 1 54251 54251 13.508 0 1 1626400 + 78239 20918 52391 53501 90921 90921 -0.0017282730793795054 YLETYFKDL 9 Unmodified _YLETYFKDL_ 0 0 0 REV__ENSG00000147873|ENST00000610521|IFNA5 REV__ENSG00000147873|ENST00000610521|IFNA5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 596.300247 1190.58594 0.41286 0.00024619 0.58736 0.00035024 1.0002 0.00059643 596.300496161468 99.34 0.14372 99.182 99.094 99.238 -0.15751 0 0 NaN 13.508 10 4 3 NaN NaN NaN NaN 0 NaN NaN 0 1626400 + 78240 20918 52391 53501 -0.0017282730793795054 YLEVAKHF 8 Unmodified _YLEVAKHF_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7719116210938 2 503.77146 1005.52837 NaN NaN NaN NaN NaN NaN NaN 51.368 1 50.954 50.454 51.454 -0.41351 0 0 0 0.4392 1 27692 27692 48.346 23.672 1 78241 4055 52392 53502 90922 90922 0.02582375277143001 YLEVGNFD 8 Unmodified _YLEVGNFD_ 0 0 0 REV__ENSG00000127951|ENST00000248598|FGL2 REV__ENSG00000127951|ENST00000248598|FGL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 956.4370727539062 1 956.435989 955.428712 0.26656 0.00025495 1.1563 0.0011059 1.4229 0.0013609 956.4370535749375 60.08 0.22275 60.08 60.003 60.225 0 15 9 2 0 0 0 0.63229 1 33531 33531 23.148 2.2772 1 947640 + 78242 19595 52393 53503 90923 90923 -0.05078487127468634 YLEVKRLIF 9 Unmodified _YLEVKRLIF_ 0 0 0 ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 ENSG00000185842|ENST00000682510|DNAH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.2428283691406 3 394.241137 1179.70158 NaN NaN NaN NaN NaN NaN NaN 51.79 1 51.731 51.231 52.231 -0.058918 0 0 0 0.82283 1 28044 28044 4.897 1.31 1 78243 9420 52394 53504 90924 90924 0.11891741333556638 YLEVLINLY 9 Unmodified _YLEVLINLY_ 0 0 0 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.783447265625 2 570.320983 1138.62741 0.85263 0.00048627 0.63173 0.00036029 1.4844 0.00084657 570.3208155208598 73.522 0.29269 73.046 72.894 73.187 -0.47588 28 12 3 0 0 0 0.19891 1 40221 40221 11.64 4.3511 1 2785000 78244 9298 52395 53505 90925 90925 0.06364353451385796 YLEVLINLY 9 Unmodified _YLEVLINLY_ 0 0 0 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 ENSG00000184898|ENST00000331426|RBM43 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 570.320983 1138.62741 0.65931 0.00037602 0.0197 1.1235E-05 0.679 0.00038725 570.3208251560555 73.11 0.14077 73.11 72.985 73.126 0 0.031752 -0.00046802 NaN 11.64 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 756200 78245 9298 52395 53505 0.06364353451385796 YLEVRYSF 8 Unmodified _YLEVRYSF_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.7689208984375 2 538.7742 1075.53385 1.1872 0.00063964 -0.48535 -0.0002615 0.70187 0.00037815 538.7737731775148 95.565 1.3581 89.39 88.912 90.27 -6.1757 216 81 4 0 0 0 0.76266 1 63777 63777 15.768 5.6943 1 170050000 + 78246 20399 52396 53506 90926 90926 -0.0008994593106308457 YLEYEEDVL 9 Unmodified _YLEYEEDVL_ 0 0 0 REV__nc|ENSG00000132849|Q8NI35-4|PATJ REV__nc|ENSG00000132849|Q8NI35-4|PATJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7677001953125 2 586.771519 1171.52849 -0.072478 -4.2528E-05 -2.4273 -0.0014243 -2.4998 -0.0014668 586.7702697929581 70.325 0.28628 70.325 70.139 70.425 0 22 12 3 0 0 0 0.25297 1 39134 39134 19.439 10.056 1 978920 + 78247 19886 52397 53507 90927 90927 -0.05041714304184097 YLFAVNIKL 9 Unmodified _YLFAVNIKL_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.8270874023438 2 540.826235 1079.63792 1.2392 0.00067021 0.73256 0.00039619 1.9718 0.0010664 540.8267624731968 98.368 0.11934 92.192 92.134 92.253 -6.1757 13 7 2 0 0 0 0.044296 1 65242 65242 61.357 30.721 1 18325000 78248 4910 52398 53508 90928 90928 0.10128380896458111 YLFERIKEL 9 Unmodified _YLFERIKEL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.5660705566406 3 404.23253 1209.67576 0.44942 0.00018167 -0.85281 -0.00034473 -0.40338 -0.00016306 404.23205059145056 57.621 0.28314 57.131 56.964 57.247 -0.48974 25 13 3 0 0 0 0.07087 2 31291 31291;31299 30.703 6.9137 1 4408700 78249 5803 52399 53509 90929;90930 90929 0.07930847091279247 YLFERIKEL 9 Unmodified _YLFERIKEL_ 0 0 0 ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 ENSG00000146842|ENST00000397622|TMEM209 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2338562011719 3 404.23253 1209.67576 1.1447 0.00046272 -1.0748 -0.00043448 0.069848 2.8235E-05 404.2322964734822 89.961 0.44407 83.785 83.544 83.988 -6.1757 47 24 3 0 0 0 0.044011 1 59372 59372 37.075 8.5801 1 14913000 78250 5803 52399 53509 90931 90931 0.07930847091279247 YLFFKDRYFWR 11 Unmodified _YLFFKDRYFWR_ 0 0 0 ENSG00000166670|ENST00000279441|MMP10 ENSG00000166670|ENST00000279441|MMP10 ENSG00000166670|ENST00000279441|MMP10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 820.9216918945312 2 820.922261 1639.82997 NaN NaN NaN NaN NaN NaN NaN 91.931 1 91.961 91.461 92.461 0.030197 0 0 0 0.9435 1 51127 51127 0 0 1 78251 7518 52400 53510 90932 90932 0.035646765766387034 YLFFRFGI 8 Unmodified _YLFFRFGI_ 0 0 0 ENSG00000144671|ENST00000448498|SLC22A14 ENSG00000144671|ENST00000448498|SLC22A14 ENSG00000144671|ENST00000448498|SLC22A14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.7911987304688 2 531.792195 1061.56984 1.171 0.00062274 -1.7849 -0.00094922 -0.61393 -0.00032648 531.7907741265749 90.86 0.56693 84.684 84.372 84.939 -6.1757 68 33 3 0 0 0 0.71616 1 59972 59972 15.768 0 1 20823000 78252 5631 52401 53511 90933 90933 0.04151556036481452 YLFFYNWWSA 10 Unmodified _YLFFYNWWSA_ 0 0 0 REV__ENST00000466781.5_1_22:26864510-26877728:-|nuORF REV__ENST00000466781.5_1_22:26864510-26877728:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 699.3217163085938 2 698.821681 1395.62881 -0.22825 -0.0001595 -2.0686 -0.0014456 -2.2968 -0.0016051 698.8209465415589 65.599 0.47929 59.423 59.148 59.628 -6.1757 63 27 3 0 0 0 0.69064 1 42617 42617 3.9444 0.3479 1 87384000 + 78253 18014 52402 53512 90934 90934 -0.053180124598611656 YLFGERLLEC 10 Carbamidomethyl (C) _YLFGERLLEC(Carbamidomethyl (C))_ YLFGERLLEC(1) YLFGERLLEC(65) 0 1 0 ENSG00000155438|ENST00000285814|NIFK;ENST00000477693.1_1_2:122488402-122494426:-|nuORF;ENST00000598115.1_1_19:51906295-51906697:-|nuORF ENSG00000155438|ENST00000285814|NIFK ENSG00000155438|ENST00000285814|NIFK MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.826171875 2 650.323731 1298.63291 1.0103 0.00065702 0.79286 0.00051562 1.8032 0.0011726 650.3243794139031 85.922 0.42677 79.746 79.53 79.957 -6.1757 32 23 2 0 0 0 0.036372 1 56646 56646 64.927 42.19 1 8989300 78254 6388 52403 53513 90935 90935 632 -0.004462910284701138 YLFIDTFYWYE 11 Unmodified _YLFIDTFYWYE_ 0 0 0 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 ENSG00000074771|ENST00000159060|NOX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1560.20849609375 1 1559.70931 1558.70203 -0.14343 -0.00022371 -0.32976 -0.00051432 -0.47318 -0.00073803 1560.7098318161638 43.917 0.053162 43.602 43.558 43.611 -0.31585 4 2 2 0 0 0 0.30605 1 23380 23380 0 0 1 36478000 78255 1134 52404 53514 90936 90936 -0.054969285278957614 YLFINFLGL 9 Unmodified _YLFINFLGL_ 0 0 0 REV__nc|ENSG00000006695|Q12887-2|COX10 REV__nc|ENSG00000006695|Q12887-2|COX10 MSMS AL20221201_MKP_PDAC_01 4 367.2121887207031 3 367.211066 1098.61137 NaN NaN NaN NaN NaN NaN NaN 79.519 1 73.344 72.844 73.844 -6.1757 0 0 0 0.7243 1 52113 52113 5.2969 1.1074 1 + 78256 16995 52405 53515 90937 90937 0.06600692005144992 YLFIYGIKF 9 Unmodified _YLFIYGIKF_ 0 0 0 REV__ENST00000341423.9_1_13:31034336-31034576:-|nuORF REV__ENST00000341423.9_1_13:31034336-31034576:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 582.3321533203125 2 582.328611 1162.64267 1.0802 0.00062901 1.4325 0.00083421 2.5127 0.0014632 582.8293412445844 80.046 1.8144 73.87 72.422 74.236 -6.1757 198 107 2 0 0 0 0.37804 1 52032 52032 13.508 2.684 1 24680000 + 78257 25708 52406 53516 90938 90938 0.06785265039229671 YLFKCRKLA 9 Unmodified _YLFKCRKLA_ 0 0 0 REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.33203125 2 571.331162 1140.64777 2.0404 0.0011657 -0.11733 -6.7033E-05 1.9231 0.0010987 571.3308837746471 94.867 0.4481 94.881 94.643 95.091 0.014244 39 16 3 0 0 0 0.48152 1 52681 52681 8.5933 0.68312 1 5168600 + 78258 25319 52407 53517 90939 90939 0.08307245630203397 YLFKCRKLA 9 Unmodified _YLFKCRKLA_ 0 0 0 REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF REV__ENST00000301332.2_1_8:145699090-145699315:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 571.331162 1140.64777 2.0404 0.0011657 -0.11733 -6.7033E-05 1.9231 0.0010987 571.3308837746471 94.867 0.4481 94.881 94.643 95.091 0.014244 0 0 NaN 8.5933 39 16 3 NaN NaN NaN NaN 0 NaN NaN 0 5168600 + 78259 25319 52407 53517 0.08307245630203397 YLFKRFIF 8 Unmodified _YLFKRFIF_ 0 0 0 ENST00000433529.6_1_2:70439571-70439754:-|nuORF ENST00000433529.6_1_2:70439571-70439754:-|nuORF ENST00000433529.6_1_2:70439571-70439754:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3331298828125 2 567.328945 1132.64334 2.3518 0.0013342 1.8288 0.0010375 4.1806 0.0023718 567.3302077547049 95.516 0.49504 95.52 95.184 95.679 0.004158 38 18 3 0 0 0 0.80975 1 53007 53007 0.79363 0 1 1943800 78260 13295 52408 53518 90940 90940 0.08232104478929614 YLFKVEHW 8 Unmodified _YLFKVEHW_ 0 0 0 REV__ENST00000530362.1_1_11:120916486-120918484:+|nuORF REV__ENST00000530362.1_1_11:120916486-120918484:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8270263671875 2 561.292559 1120.57057 0.17884 0.00010038 -3.6645 -0.0020569 -3.4857 -0.0019565 561.2903372155678 37.853 0.19829 37.582 37.462 37.66 -0.27133 19 9 3 0 0 0 8.7369 1 19872 19872 5.7604 0 1 3477700 + 78261 28439 52409 53519 90941 90941 0.01510350685521189 YLFLFCSFL 9 Unmodified _YLFLFCSFL_ 0 0 0 REV__ENSG00000256574|ENST00000553795|OR13A1 REV__ENSG00000256574|ENST00000553795|OR13A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7940673828125 2 576.793546 1151.57254 1.0617 0.00061241 1.0066 0.00058061 2.0684 0.001193 577.2959081408058 79.573 0.3232 79.083 78.889 79.212 -0.48932 35 13 3 0 0 0 0.46577 1 43554 43554 9.3474 2.0582 1 2635600 + 78262 24556 52410 53520 90942 90942 0.0028164337909402093 YLFLFMQLYPV 11 Unmodified _YLFLFMQLYPV_ 0 0 0 REV__nc|ENSG00000153485|Q8N6I4-2|LYSET REV__nc|ENSG00000153485|Q8N6I4-2|LYSET MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 717.382080078125 2 717.380517 1432.74648 NaN NaN NaN NaN NaN NaN NaN 90.949 1 90.455 89.955 90.955 -0.49457 0 0 0 0.82593 1 49720 49720 10.824 2.0785 1 + 78263 21173 52411 53521 90943 90943 0.04741804084596879 YLFLQMRF 8 Unmodified _YLFLQMRF_ 0 0 0 ENST00000553816.5_1_14:68151682-68162420:-|nuORF ENST00000553816.5_1_14:68151682-68162420:-|nuORF ENST00000553816.5_1_14:68151682-68162420:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7634887695312 2 559.296788 1116.57902 NaN NaN NaN NaN NaN NaN NaN 93.563 1 93.563 93.063 94.063 0 0 0 0 0.97444 1 51726 51726 0.69038 0 1 78264 15197 52412 53522 90944 90944 0.025395813304839976 YLFNATRSY 9 Unmodified _YLFNATRSY_ 0 0 0 ENSG00000034533|ENST00000264992|ASTE1;ENST00000507978.5_1_3:130732903-130735843:-|nuORF ENSG00000034533|ENST00000264992|ASTE1 ENSG00000034533|ENST00000264992|ASTE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.7865600585938 2 567.782556 1133.55056 0.76482 0.00043425 1.8364 0.0010427 2.6012 0.0014769 567.784940234082 82.619 1.8045 76.444 75.637 77.442 -6.1757 229 99 3 0 0 0 0.32871 1 54408 54408 15.847 0 1 40995000 78265 606 52413 53523 90945 90945 -0.01087445045095592 YLFNFLII 8 Unmodified _YLFNFLII_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.7969360351562 2 521.802229 1041.5899 0.82915 0.00043265 0.36348 0.00018966 1.1926 0.00062232 521.8024355289917 101.66 0.17183 95.48 95.373 95.545 -6.1757 20 8 3 0 0 0 0.77907 1 68144 68144 10.183 2.8942 1 40478000 78266 8967 52414 53524 90946 90946 0.07077306976430009 YLFNSVVNV 9 Unmodified _YLFNSVVNV_ 0 0 0 ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENSG00000166793|ENST00000300022|YPEL4 ENSG00000175155|ENST00000312655|YPEL2;nc|ENSG00000090238|P61236|YPEL3;ENSG00000166793|ENST00000300022|YPEL4 nc|ENSG00000090238|P61236|YPEL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.2635498046875 2 527.782025 1053.5495 0.25511 0.00013464 1.8514 0.00097712 2.1065 0.0011118 527.7838404228957 79.36 0.28487 79.415 79.21 79.495 0.054977 12 10 2 0 0 0 0.17275 1 43831 43831 15.847 7.2539 1 1586300 78267 1740;1550;7531 52415 53525 90947 90947 0.024863405860060084 YLFNTFGWKG 10 Unmodified _YLFNTFGWKG_ 0 0 0 ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7 ENST00000549928.5_1_12:60154925-60173457:+|nuORF ENST00000549928.5_1_12:60154925-60173457:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.3098754882812 2 616.808574 1231.60259 0.41715 0.0002573 0.88604 0.00054651 1.3032 0.00080381 616.8094191885758 76.191 0.68002 76.239 75.909 76.589 0.047943 81 28 4 0 0 0 0.33553 1 41972 41972 25.399 2.663 1 127070000 78268 3382 52416 53526 90948 90948 -0.00394281631361082 YLFNYIIV 8 Unmodified _YLFNYIIV_ 0 0 0 REV__ENST00000481451.1_1_10:124172402-124177583:+|nuORF REV__ENST00000481451.1_1_10:124172402-124177583:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7918090820312 2 522.791861 1043.56917 NaN NaN NaN NaN NaN NaN NaN 95.78 1 95.412 94.912 95.912 -0.36814 0 0 0 0.97444 1 52314 52314 2.5775 0 1 + 78269 27694 52417 53527 90949 90949 0.04912716596732025 YLFPETEFI 9 Unmodified _YLFPETEFI_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3 ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7905883789062 2 579.789515 1157.56448 0.3974 0.00023041 0.014076 8.1608E-06 0.41147 0.00023857 579.7899490581297 96.215 0.18407 95.91 95.844 96.028 -0.30472 14 9 3 0 0 0 0.53666 1 52561 52561 5.2307 0 1 365110 78270 4671 52418 53528 90950 90950 -0.008002123366622982 YLFPILRGF 9 Unmodified _YLFPILRGF_ 0 0 0 ENST00000374142.8_2_1:27180355-27180478:+|nuORF ENST00000374142.8_2_1:27180355-27180478:+|nuORF ENST00000374142.8_2_1:27180355-27180478:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.3253173828125 2 563.326402 1124.63825 2.4475 0.0013788 -1.4122 -0.00079552 1.0354 0.00058325 563.3253493550944 94.762 0.22546 94.776 94.594 94.819 0.014244 16 8 2 0 0 0 0.2143 1 52672 52672 21.747 0 1 1267900 78271 12435 52419 53529 90951 90951 0.0809180061630741 YLFPRELF 8 Unmodified _YLFPRELF_ 0 0 0 ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L ENSG00000184967|ENST00000330579|NOC4L MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2942504882812 2 542.794935 1083.57532 1.1207 0.00060829 -0.18722 -0.00010162 0.93345 0.00050667 542.7953769127429 98.014 0.26831 91.839 91.64 91.908 -6.1757 24 16 2 0 0 0 0.55032 1 64856 64856 30.225 3.3412 1 24639000 78272 9308 52420 53530 90952 90952 0.036872348282713574 YLFREEHWTWF 11 Unmodified _YLFREEHWTWF_ 0 0 0 REV__nc|ENSG00000293442|O43930|PRKY REV__nc|ENSG00000293442|O43930|PRKY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.5888671875 3 538.589376 1612.7463 NaN NaN NaN NaN NaN NaN NaN 43.515 1 43.515 43.015 44.015 0 0 0 0 0.94196 1 23638 23638 1.1098 0.6038 1 + 78273 28407 52421 53531 90953 90953 -0.035564795910659086 YLFSMMKRF 9 Unmodified _YLFSMMKRF_ 0 0 0 ENST00000306434.7_1_2:85769027-85769380:+|nuORF ENST00000306434.7_1_2:85769027-85769380:+|nuORF ENST00000306434.7_1_2:85769027-85769380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.2428588867188 2 611.809205 1221.60386 0.349 0.00021352 -1.4721 -0.00090067 -1.1231 -0.00068714 611.8082320031921 58.707 0.23903 58.217 58.09 58.329 -0.49079 19 11 2 0 0 0 0.53666 1 31992 31992 5.2307 0.47466 1 3517600 78274 11629 52422 53532 90954 90954 0.0019189314155028114 YLFSSSASPF 10 Unmodified _YLFSSSASPF_ 0 0 0 REV__ENST00000392872.7_1_12:104359784-104370752:+|nuORF REV__ENST00000392872.7_1_12:104359784-104370752:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.2640380859375 2 553.263665 1104.51278 0.87982 0.00048677 -0.63093 -0.00034907 0.24889 0.0001377 553.2635454589443 74.685 0.40903 74.21 73.997 74.406 -0.47588 36 16 3 0 0 0 0.60623 1 40837 40837 10.824 0.75 1 2183700 + 78275 26408 52423 53533 90955 90955 -0.03529956030570247 YLFTVFDPV 9 Unmodified _YLFTVFDPV_ 0 0 0 REV__ENSG00000113318|ENST00000265081|MSH3 REV__ENSG00000113318|ENST00000265081|MSH3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7848510742188 2 550.786776 1099.559 NaN NaN NaN NaN NaN NaN NaN 56.269 1 56.2 55.7 56.7 -0.068737 0 0 0 0.50124 1 30600 30600 15.847 1.9411 1 + 78276 18861 52424 53534 90956 90956 0.013201088715277365 YLFWFWYPQNR 11 Unmodified _YLFWFWYPQNR_ 0 0 0 REV__ENST00000228506.7_1_12:121134380-121134431:+|nuORF REV__ENST00000228506.7_1_12:121134380-121134431:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 810.3947143554688 2 810.393336 1618.77212 NaN NaN NaN NaN NaN NaN NaN 47.458 1 42.224 41.724 42.724 -5.2339 0 0 0 0.94301 1 29453 29453 0.35063 0 1 + 78277 24801 52425 53535 90957 90957 -0.01251585348768458 YLFWFWYPQNR 11 Unmodified _YLFWFWYPQNR_ 0 0 0 REV__ENST00000228506.7_1_12:121134380-121134431:+|nuORF REV__ENST00000228506.7_1_12:121134380-121134431:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 810.3941650390625 2 810.393336 1618.77212 NaN NaN NaN NaN NaN NaN NaN 47.629 1 42.395 41.895 42.895 -5.2339 0 0 0 0.94301 1 29579 29579 0.35063 0 1 + 78278 24801 52425 53535 90958 90958 -0.01251585348768458 YLFYLYKL 8 Unmodified _YLFYLYKL_ 0 0 0 REV__ENSG00000130935|ENST00000253247|NOL11 REV__ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.813232421875 2 561.815336 1121.61612 0.34963 0.00019643 -3.2105 -0.0018037 -2.8609 -0.0016073 561.8130899701358 70.411 0.17774 69.932 69.777 69.954 -0.47903 11 7 2 0 0 0 0.65867 1 38473 38473 20.871 1.6142 1 1800800 + 78279 19752 52426 53536 90959 90959 0.060175761479058565 YLFYLYKL 8 Unmodified _YLFYLYKL_ 0 0 0 REV__ENSG00000130935|ENST00000253247|NOL11 REV__ENSG00000130935|ENST00000253247|NOL11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 561.815336 1121.61612 0.34963 0.00019643 -3.2105 -0.0018037 -2.8609 -0.0016073 561.8130899701358 70.411 0.17774 69.932 69.777 69.954 -0.47903 0 0 NaN 20.871 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1800800 + 78280 19752 52426 53536 0.060175761479058565 YLGEERPIFK 10 Unmodified _YLGEERPIFK_ 0 0 0 REV__nc|ENSG00000136068|O75369-5|FLNB REV__nc|ENSG00000136068|O75369-5|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 626.8424682617188 2 626.340238 1250.66592 1.6727 0.0010477 -1.6023 -0.0010036 0.070338 4.4056E-05 626.3393750976918 92.502 0.31342 92.532 92.362 92.675 0.030197 20 11 2 0 0 0 0.32072 1 51417 51417 26.268 4.5215 1 10640000 + 78281 20134 52427 53537 90960 90960 0.050616590858680865 YLGEFGEDQIY 11 Unmodified _YLGEFGEDQIY_ 0 0 0 ENST00000511979.1_1_5:138723456-138723684:-|nuORF;nc|ENSG00000170476|Q8WU39-3|MZB1;ENST00000417694.6_1_5:138723456-138724322:-|nuORF;ENST00000503481.5_1_5:138723456-138725442:-|nuORF;ENSG00000170476|ENST00000302125|MZB1 ENST00000511979.1_1_5:138723456-138723684:-|nuORF ENST00000511979.1_1_5:138723456-138723684:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 667.302001953125 2 667.300975 1332.5874 -0.49705 -0.00033168 -0.2071 -0.0001382 -0.70415 -0.00046988 667.3007447969665 29.11 0.50807 29.11 28.903 29.411 0 66 24 3 0 0 0 0.71618 1 15004 15004 2.7352 0 1 3470100 78282 7993 52428 53538 90961 90961 -0.06559238009845103 YLGEVFTQAMP 11 Unmodified _YLGEVFTQAMP_ 0 0 0 ENSG00000177191|ENST00000691102|B3GNT8 ENSG00000177191|ENST00000691102|B3GNT8 ENSG00000177191|ENST00000691102|B3GNT8 MSMS AL20221201_MKP_PDAC_01 4 419.2065124511719 3 419.205763 1254.59546 NaN NaN NaN NaN NaN NaN NaN 77.158 1 70.983 70.483 71.483 -6.1757 0 0 0 0.86932 1 50461 50461 4.4062 0 1 78283 8665 52429 53539 90962 90962 -0.021653822940606915 YLGGHGFN 8 Unmodified _YLGGHGFN_ 0 0 0 nc|ENSG00000148498|Q8TEW0-3|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3 nc|ENSG00000148498|Q8TEW0-3|PARD3 nc|ENSG00000148498|Q8TEW0-3|PARD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.7039489746094 2 432.703577 863.392602 0.3178 0.00013752 0.92814 0.00040161 1.2459 0.00053912 432.70367317097265 76.137 0.4668 76.185 75.909 76.376 0.047943 50 19 3 0 0 0 0.80975 1 42013 42013 0.79363 0 1 29811000 78284 5941 52430 53540 90963 90963 -0.04455899513664008 YLGGYEQCDA 10 Unmodified _YLGGYEQCDA_ 0 0 0 ENSG00000132692|ENST00000329117|BCAN;nc|ENSG00000132692|Q96GW7-2|BCAN ENSG00000132692|ENST00000329117|BCAN ENSG00000132692|ENST00000329117|BCAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 373.4872436523438 3 373.486818 1117.43863 0.24856 9.2836E-05 0.40016 0.00014945 0.64873 0.00024229 373.48695397891555 59.441 0.52337 59.441 59.192 59.716 0 43 22 3 0 0 0 0.67459 1 33120 33120 3.0723 0 1 4222900 78285 4439 52431 53541 90964 90964 -0.11539667184410973 YLGIEVIRL 9 Unmodified _YLGIEVIRL_ 0 0 0 ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216;ENST00000541473.1_1_11:61160710-61161501:+|nuORF;nc|ENSG00000187049|Q9P0N5-2|TMEM216;ENST00000544795.5_1_11:61160710-61165288:+|nuORF ENSG00000187049|ENST00000515837|TMEM216 ENSG00000187049|ENST00000515837|TMEM216 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.3221435546875 2 538.329142 1074.64373 -0.23956 -0.00012896 0.34643 0.0001865 0.10688 5.7536E-05 538.3290935399953 85.655 0.33884 85.716 85.539 85.878 0.061646 23 11 3 0 0 0 0.13231 1 47454 47454 39.957 13.074 1 35301000 78286 9531 52432 53542 90965 90965 0.10939479408125408 YLGKLVRF 8 Unmodified _YLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 498.3056030273438 2 498.30547 994.596387 0.21401 0.00010664 0.01793 8.9345E-06 0.23194 0.00011558 498.3054786654242 54.075 0.24135 53.608 53.446 53.687 -0.46664 18 11 2 0 0 0 0.13832 1 29263 29263 89.427 48.978 1 2786300 78287 4592;14245 52433 53543 90966 90966 0.09887244927790562 YLGKLVRF 8 Unmodified _YLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 498.3047485351562 2 498.30547 994.596387 -0.24451 -0.00012184 -0.32725 -0.00016307 -0.57175 -0.00028491 498.30512696019747 53.621 0.44304 53.558 53.423 53.866 -0.063423 68 28 3 0 0 0 0.079151 2 29160 29054;29160 109.63 62.708 1 33670000 78288 4592;14245 52433 53543 90967;90968 90968 0.09887244927790562 YLGKLVRF 8 Unmodified _YLGKLVRF_ 0 0 0 ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2;ENST00000489749.1_1_2:7018228-7023923:+|nuORF ENSG00000134321|ENST00000382040|RSAD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 498.30615234375 2 498.30547 994.596387 0.983 0.00048983 0.56562 0.00028185 1.5486 0.00077168 498.3053495778291 80.219 1.0918 74.043 73.387 74.479 -6.1757 90 64 2 0 0 0 0.094359 4 52349 52349;52482;52612;52745 101.72 63.571 1 26851000 78289 4592;14245 52433 53543 90969;90970;90971;90972 90969 0.09887244927790562 YLGLAGRLY 9 Unmodified _YLGLAGRLY_ 0 0 0 REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 513.292236328125 2 513.292559 1024.57057 0.83676 0.0004295 -0.50383 -0.00025861 0.33292 0.00017089 513.2921439342119 69.192 0.38812 63.017 62.822 63.21 -6.1757 38 21 2 0 0 0 0.087258 1 45131 45131 36.044 5.4077 1 56278000 + 78290 28430 52434 53544 90973 90973 0.05926350685513171 YLGLAGRLY 9 Unmodified _YLGLAGRLY_ 0 0 0 REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF REV__ENST00000529983.2_1_12:89918135-89918465:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 513.292559 1024.57057 0.18246 9.3654E-05 -2.2732 -0.0011668 -2.0908 -0.0010732 513.2917458320511 63.474 0.13414 62.988 62.905 63.04 -0.48617 -0.014499 -0.001597 NaN 36.044 9 5 2 NaN NaN NaN NaN 0 NaN NaN 0 519990 + 78291 28430 52434 53544 0.05926350685513171 YLGLFDSFR 9 Unmodified _YLGLFDSFR_ 0 0 0 REV__nc|ENSG00000028528|Q13596-3|SNX1 REV__nc|ENSG00000028528|Q13596-3|SNX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2958984375 2 559.287474 1116.5604 1.6323 0.00091294 2.1391 0.0011964 3.7715 0.0021093 559.2879868975464 97.504 0.37886 91.328 91.08 91.459 -6.1757 76 20 5 0 0 0 0.2143 1 64524 64524 21.747 2.4897 1 341740000 + 78292 29487 52435 53545 90974 90974 0.0067774296028346726 YLGLGPGH 8 Unmodified _YLGLGPGH_ 0 0 0 nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP nc|ENSG00000100890|O15091-2|PRORP nc|ENSG00000100890|O15091-2|PRORP MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.2173461914062 2 407.216321 812.418088 1.1037 0.00044946 1.6841 0.00068578 2.7878 0.0011352 407.21727752056995 32.476 0.2757 28.62 28.477 28.753 -3.8562 21 14 2 0 0 0 0.76859 1 18547 18547 11.114 0 1 5919000 78293 1885 52436 53546 90975 90975 0.00437575008766089 YLGNINPQM 9 Oxidation (M) _YLGNINPQM(Oxidation (M))_ YLGNINPQM(1) YLGNINPQM(67) 0 0 1 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF nc|ENSG00000163714|O15042-2|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.254150390625 2 533.255317 1064.49608 NaN NaN NaN NaN NaN NaN NaN 39.818 1 39.52 39.02 40.02 -0.29716 0 0 0 0.029091 1 21021 21021 67.344 33.241 1 78294 7056 52437 53547 90976 90976 1213 -0.03358780188182209 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1 CACNG4-VMP1|1|fusion CACNG4-VMP1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 478.7633666992188 2 478.763635 955.512717 0.71256 0.00034115 -0.67421 -0.00032279 0.038355 1.8363E-05 478.7631486614211 46.66 0.25153 46.323 46.21 46.462 -0.33664 18 12 2 0 0 0 0.06187 1 25018 25018 42.095 18.946 1 3172600 78295 48 52438 53548 90977 90977 0.03318088760090632 YLGPHIASV 9 Unmodified _YLGPHIASV_ 0 0 0 CACNG4-VMP1|1|fusion;ENSG00000062716|ENST00000262291|VMP1 CACNG4-VMP1|1|fusion CACNG4-VMP1|1|fusion MSMS AL20221201_MKP_PDAC_01 4 478.76416015625 2 478.763635 955.512717 NaN NaN NaN NaN NaN NaN NaN 52.579 1 46.844 46.344 47.344 -5.7345 0 0 0 0.071041 1 33191 33191 50.855 24.514 1 78296 48 52438 53548 90978 90978 0.03318088760090632 YLGPTLKSL 9 Unmodified _YLGPTLKSL_ 0 0 0 REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2944641113281 2 496.294768 990.574983 0.57834 0.00028702 -0.35198 -0.00017468 0.22636 0.00011234 496.29465079218267 83.061 0.24735 82.563 82.425 82.672 -0.49751 15 9 2 0 0 0 0.39863 1 45471 45471 12.532 0 1 912610 + 78297 20588 52439 53549 90979 90979 0.0793181510841805 YLGPTLKSL 9 Unmodified _YLGPTLKSL_ 0 0 0 REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF REV__ENST00000485551.5_1_1:35906621-35936502:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 496.294768 990.574983 0.57834 0.00028702 -0.35198 -0.00017468 0.22636 0.00011234 496.29465079218267 83.061 0.24735 82.563 82.425 82.672 -0.49751 0 0 NaN 12.532 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 912610 + 78298 20588 52439 53549 0.0793181510841805 YLGQNHSL 8 Unmodified _YLGQNHSL_ 0 0 0 REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF REV__ENST00000557837.1_1_15:89060105-89074648:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2345581054688 2 466.235242 930.45593 NaN NaN NaN NaN NaN NaN NaN 54.516 1 54.449 53.949 54.949 -0.066936 0 0 0 0.9249 1 29608 29608 15.768 0 1 + 78299 20484 52440 53550 90980 90980 -0.01207958796442199 YLGQVTTI 8 Unmodified _YLGQVTTI_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;nc|ENSG00000126261|Q9UBT2-2|UBA2 ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 894.49169921875 1 894.49311 893.485833 -0.57468 -0.00051405 2.1255 0.0019012 1.5508 0.0013872 894.4925982800019 54.758 0.1197 54.291 54.261 54.381 -0.46664 7 5 2 0 0 0 0.5953 1 29696 29696 26.341 0 1 1247700 78300 3940 52441 53551 90981 90981 0.03482980148908155 YLGRGPGL 8 Unmodified _YLGRGPGL_ 0 0 0 ENSG00000126266|ENST00000246553|FFAR1 ENSG00000126266|ENST00000246553|FFAR1 ENSG00000126266|ENST00000246553|FFAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.7370910644531 2 416.73742 831.460287 0.23629 9.847E-05 0.20336 8.4749E-05 0.43965 0.00018322 416.7374624642727 54.151 0.27357 53.685 53.567 53.841 -0.46664 20 13 2 0 0 0 0.72953 1 29344 29344 14.582 1.0738 1 2313200 78301 3942 52442 53552 90982 90982 0.03781550417136259 YLGRLAHEV 9 Unmodified _YLGRLAHEV_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.1980285644531 3 353.197819 1056.57163 0.25373 8.9618E-05 0.43289 0.0001529 0.68663 0.00024252 353.5323818266667 31.227 0.18045 31.125 31.034 31.214 -0.10269 9 6 2 0 0 0 0.46162 1 16233 16233 9.544 1.935 1 2105200 78302 5424 52443 53553 90983 90983 0.045605650544075615 YLGRLAHEV 9 Unmodified _YLGRLAHEV_ 0 0 0 ENSG00000142541|ENST00000391857|RPL13A;ZNF493-RPL13A|1|fusion;ENST00000425147.1_1_21:26734448-26734742:+|nuORF ENSG00000142541|ENST00000391857|RPL13A ENSG00000142541|ENST00000391857|RPL13A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 353.197819 1056.57163 0.049477 1.7475E-05 -0.27421 -9.685E-05 -0.22473 -7.9375E-05 353.19735685723026 31.206 0.20668 31.206 31.132 31.339 0 0.040798 -0.00031625 NaN 9.544 16 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1013600 78303 5424 52443 53553 0.045605650544075615 YLGSEVPEKI 10 Unmodified _YLGSEVPEKI_ 0 0 0 nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 nc|ENSG00000165288|Q6RI45-5|BRWD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.8053588867188 2 567.805697 1133.59684 0.3234 0.00018363 0.94438 0.00053623 1.2678 0.00071986 567.8056551087367 92.469 0.23732 92.469 92.385 92.622 0 24 16 2 0 0 0 0.67033 1 51111 51111 6.2058 0.97511 1 512300 78304 7321 52444 53554 90984 90984 0.035385750663408544 YLGYINHVDRH 11 Unmodified _YLGYINHVDRH_ 0 0 0 REV__ENSG00000089597|ENST00000356638|GANAB REV__ENSG00000089597|ENST00000356638|GANAB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.9021606445312 3 462.901954 1385.68403 0.50944 0.00023582 0.13405 6.2054E-05 0.6435 0.00029788 462.9018173196752 61.904 0.29707 61.904 61.775 62.072 0 20 12 2 0 0 0 0.67371 1 34518 34518 3.0723 1.6171 1 2149200 + 78305 17843 52445 53555 90985 90985 0.006617940606020056 YLGYYQSAF 9 Unmodified _YLGYYQSAF_ 0 0 0 nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF nc|ENSG00000135506|Q13438-8|OS9 nc|ENSG00000135506|Q13438-8|OS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2589721679688 2 556.258382 1110.50221 0.90566 0.00050378 -0.99627 -0.00055418 -0.090611 -5.0403E-05 556.25776120323 69.439 0.33646 63.263 63.058 63.394 -6.1757 27 17 2 0 0 0 0.08691 1 45321 45321 36.127 7.0454 1 23327000 78306 4713 52446 53556 90986 90986 -0.04861938685007772 YLHAPIAGIS 10 Unmodified _YLHAPIAGIS_ 0 0 0 ENSG00000153093|ENST00000439055|ACOXL ENSG00000153093|ENST00000439055|ACOXL ENSG00000153093|ENST00000439055|ACOXL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.832275390625 2 521.290017 1040.56548 1.2598 0.00065672 0.0067587 3.5233E-06 1.2666 0.00066025 521.2901618550935 97.021 0.23624 90.845 90.693 90.929 -6.1757 17 13 2 0 0 0 0.23117 1 64339 64339 11.64 1.4569 1 10900000 78307 6237 52447 53557 90987 90987 0.0468204682290434 YLHDFLKYL 9 Unmodified _YLHDFLKYL_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5538024902344 3 404.553492 1210.63865 0.041669 1.6857E-05 0.52091 0.00021074 0.56258 0.00022759 404.5536840946115 74.847 0.27362 74.893 74.751 75.025 0.045959 40 12 4 0 0 0 0.098164 1 41239 41239 33.445 19.83 1 12111000 78308 9411 52448 53558 90988 90988 0.041751755455152306 YLHDFLKYL 9 Unmodified _YLHDFLKYL_ 0 0 0 ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000123562|ENST00000441076|MORF4L2;ENST00000447135.2_1_4:174537089-174537971:-|nuORF ENSG00000185787|ENST00000426013|MORF4L1 ENSG00000185787|ENST00000426013|MORF4L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.5531311035156 3 404.553492 1210.63865 1.4494 0.00058638 -0.29339 -0.00011869 1.1561 0.00046769 404.5532382237718 98.091 0.23358 91.915 91.781 92.014 -6.1757 22 14 2 0 0 0 0.037118 1 64981 64981 51.488 33.115 1 11405000 78309 9411 52448 53558 90989 90989 0.041751755455152306 YLHGDLCDMC 10 Unmodified _YLHGDLCDMC_ 0 0 0 nc|ENSG00000238222|Q13434|MKRN4P nc|ENSG00000238222|Q13434|MKRN4P nc|ENSG00000238222|Q13434|MKRN4P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.4874877929688 3 390.485655 1168.43514 0.49831 0.00019458 2.2357 0.00087301 2.734 0.0010676 390.48756000930786 86.806 0.30339 86.303 86.165 86.469 -0.50318 27 11 4 0 0 0 0.70951 1 47492 47492 2.086 0 1 602280 78310 16566 52449 53559 90990 90990 -0.14234376554259143 YLHGMHLCI 9 Unmodified _YLHGMHLCI_ 0 0 0 ENSG00000179152|ENST00000342649|TCAIM;nc|ENSG00000179152|Q8N3R3-4|TCAIM ENSG00000179152|ENST00000342649|TCAIM ENSG00000179152|ENST00000342649|TCAIM MSMS AL20221201_MKP_PDAC_01 4 362.8445739746094 3 362.845624 1085.51504 NaN NaN NaN NaN NaN NaN NaN 46.96 1 41.879 41.379 42.379 -5.0805 0 0 0 0.38239 1 29091 29091 13.906 1.0501 1 78311 8816 52450 53560 90991 90991 -0.02429522098123016 YLHKKNIIF 9 Unmodified _YLHKKNIIF_ 0 0 0 ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101565016-101602660:+|nuORF ENSG00000154237|ENST00000388948|LRRK1 ENSG00000154237|ENST00000388948|LRRK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5691528320312 3 392.569365 1174.68626 -0.14827 -5.8204E-05 -0.30059 -0.000118 -0.44886 -0.00017621 392.5691793441021 35.293 0.37436 35.32 35.186 35.56 0.027325 54 17 5 0 0 0 0.25297 1 18687 18687 18.146 1.0335 1 78584000 78312 6309 52451 53561 90992 90992 0.10590874536364936 YLHNEDQFAY 10 Unmodified _YLHNEDQFAY_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.861083984375 3 433.859532 1298.55677 0.6437 0.00027927 1.3174 0.00057158 1.9611 0.00085085 433.86002548315133 30.123 0.45863 30.043 29.746 30.205 -0.080429 29 17 2 0 0 0 0.65282 1 15604 15604 7.4771 0.85361 1 6464400 + 78313 24052 52452 53562 90993 90993 -0.0805697160424188 YLHNEDQFAY 10 Unmodified _YLHNEDQFAY_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.8606567382812 3 433.859532 1298.55677 1.4528 0.0006303 1.0787 0.000468 2.5315 0.0010983 433.85991840234357 34.047 0.34086 30.061 29.858 30.199 -3.9853 49 18 3 0 0 0 0.50362 1 19544 19544 10.315 3.2781 1 22067000 + 78314 24052 52452 53562 90994 90994 -0.0805697160424188 YLHNEDQFAY 10 Unmodified _YLHNEDQFAY_ 0 0 0 REV__ENSG00000198752|ENST00000361246|CDC42BPB REV__ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 433.859532 1298.55677 1.4528 0.0006303 1.0787 0.000468 2.5315 0.0010983 433.85991840234357 34.047 0.34086 30.061 29.858 30.199 -3.9853 0.076023 -0.00033784 NaN 10.315 49 18 3 NaN NaN NaN NaN 0 NaN NaN 0 22067000 + 78315 24052 52452 53562 -0.0805697160424188 YLHNGRPSF 9 Unmodified _YLHNGRPSF_ 0 0 0 ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-3|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11 ENSG00000104133|ENST00000261866|SPG11 ENSG00000104133|ENST00000261866|SPG11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.2037353515625 2 545.775065 1089.53558 0.39509 0.00021563 -3.3987 -0.0018549 -3.0036 -0.0016393 545.7729094928515 67.903 0.50756 67.903 67.697 68.204 0 57 24 3 0 0 0 0.54444 1 37763 37763 4.756 1.8668 1 2200100 78316 2180 52453 53563 90995 90995 -0.005608921224165897 YLHPNGHQKF 10 Unmodified _YLHPNGHQKF_ 0 0 0 REV__ENSG00000145390|ENST00000692078|USP53 REV__ENSG00000145390|ENST00000692078|USP53 MSMS AL20221201_MKP_PDAC_01 4 414.2148132324219 3 414.21224 1239.61489 NaN NaN NaN NaN NaN NaN NaN 16.251 1 13.694 13.194 14.194 -2.557 0 0 0 0.98914 1 8405 8405 0.77653 0 1 + 78317 20773 52454 53564 90996 90996 0.004667548316774628 YLHPNILC 8 Unmodified _YLHPNILC_ 0 0 0 nc|ENSG00000115750|Q53T94-3|TAF1B;ENSG00000115750|ENST00000263663|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B nc|ENSG00000115750|Q53T94-3|TAF1B MSMS AL20221201_MKP_PDAC_01 4 486.7529296875 2 486.752213 971.489873 NaN NaN NaN NaN NaN NaN NaN 50.278 1 44.739 44.239 45.239 -5.5391 0 0 0 0.44807 1 31519 31519 46.921 14.804 1 78318 3157 52455 53565 90997 90997 0.002987463709587246 YLHQPGREFQL 11 Unmodified _YLHQPGREFQL_ 0 0 0 ENST00000263388.6_1_19:15295119-15295215:-|nuORF ENST00000263388.6_1_19:15295119-15295215:-|nuORF ENST00000263388.6_1_19:15295119-15295215:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2421569824219 3 463.242088 1386.70443 0.15476 7.169E-05 0.6146 0.00028471 0.76936 0.0003564 463.2423500801679 16.174 0.2019 13.618 13.53 13.732 -2.557 74 33 3 0 0 0 0.72981 1 8324 8324 1.4551 0 1 4766300 78319 11290 52456 53566 90998 90998 0.026549647204319626 YLHSGQVAL 9 Unmodified _YLHSGQVAL_ 0 0 0 nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L;ENST00000544275.1_1_16:19659174-19663786:+|nuORF nc|ENSG00000103544|Q7Z3J2-2|VPS35L nc|ENSG00000103544|Q7Z3J2-2|VPS35L MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2673645019531 2 494.266542 986.51853 0.73232 0.00036196 2.5526 0.0012617 3.2849 0.0016236 494.2670916631133 43.07 0.20522 38.305 38.129 38.334 -4.7648 16 12 2 0 0 0 0.05447 1 26111 26111 43.858 22.112 1 6076900 78320 16098 52457 53567 90999 90999 0.024731872717552505 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.2791748046875 2 516.279649 1030.54475 0.2316 0.00011957 -1.1076 -0.00057185 -0.87604 -0.00045228 516.279956025201 37.621 0.41378 37.621 37.35 37.764 0 58 21 5 0 0 0 0.03568 1 20002 20002 52.268 21.632 1 16206000 78321 10258 52458 53568 91000 91000 0.030694564432451443 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.279541015625 2 516.279649 1030.54475 -0.06018 -3.107E-05 -0.4334 -0.00022376 -0.49358 -0.00025483 516.2795678693002 37.89 0.31746 37.618 37.485 37.802 -0.27133 45 15 4 0 0 0 0.018301 2 19886 19886;19994 65.235 19.535 1 25198000 78322 10258 52458 53568 91001;91002 91001 0.030694564432451443 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2799682617188 2 516.279649 1030.54475 0.022873 1.1809E-05 0.98935 0.00051078 1.0122 0.00052259 516.2794861444592 37.542 0.15399 37.559 37.46 37.614 0.01704 13 7 3 0 0 0 0.08691 1 19932 19932 36.127 12.106 1 2130800 78323 10258 52458 53568 91003 91003 0.030694564432451443 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.2797241210938 2 516.279649 1030.54475 0.66885 0.00034531 0.2625 0.00013553 0.93135 0.00048084 516.2794707873068 43.12 0.5241 38.355 38.083 38.607 -4.7648 91 35 4 0 0 0 0.028475 2 26159 26027;26159 56.177 21.775 1 189600000 78324 10258 52458 53568 91004;91005 91005 0.030694564432451443 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MSMS AL20221201_MKP_PDAC_01 4 516.2792358398438 2 516.279649 1030.54475 NaN NaN NaN NaN NaN NaN NaN 43.314 1 38.549 38.049 39.049 -4.7648 0 0 0 0.41346 1 26294 26294 19.257 0 1 78325 10258 52458 53568 91006 91006 0.030694564432451443 YLHSQVVSV 9 Unmodified _YLHSQVVSV_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.279649 1030.54475 0.56133 0.0002898 -3.1772 -0.0016403 -2.6159 -0.0013505 516.7780049460216 38.495 0.16166 38.495 38.458 38.62 0 0.070193 -0.0034376 NaN 56.177 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 846040 78326 10258 52458 53568 0.030694564432451443 YLHVQGNG 8 Unmodified _YLHVQGNG_ 0 0 0 REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 444.2223510742188 2 444.222134 886.429715 0.80701 0.00035849 0.93328 0.00041459 1.7403 0.00077308 444.22239511368196 50.836 0.29445 50.782 50.669 50.963 -0.053871 35 14 3 0 0 0 0.80624 1 27565 27565 2.8892 0 1 7234300 + 78327 16970 52459 53569 91007 91007 -0.018042279678979867 YLHVQGNG 8 Unmodified _YLHVQGNG_ 0 0 0 REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 444.222134 886.429715 0.2283 0.00010142 1.6867 0.00074928 1.915 0.00085069 444.22273583221363 51.057 0.22073 50.644 50.518 50.738 -0.41351 0.0087519 0.0002105 NaN 2.8892 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 904780 + 78328 16970 52459 53569 -0.018042279678979867 YLHVQGNG 8 Unmodified _YLHVQGNG_ 0 0 0 REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF REV__ENST00000468778.5_1_2:74650926-74652825:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 444.222134 886.429715 0.80701 0.00035849 0.93328 0.00041459 1.7403 0.00077308 444.22239511368196 50.836 0.29445 50.782 50.669 50.963 -0.053871 0.14733 -0.00045888 NaN 2.8892 35 14 3 NaN NaN NaN NaN 0 NaN NaN 0 7234300 + 78329 16970 52459 53569 -0.018042279678979867 YLHVSKLLL 9 Unmodified _YLHVSKLLL_ 0 0 0 REV__ENSG00000178904|ENST00000392250|DPY19L3 REV__ENSG00000178904|ENST00000392250|DPY19L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5628662109375 3 362.562099 1084.66447 1.0264 0.00037215 0.14161 5.1343E-05 1.168 0.00042349 362.5621503803224 46.485 0.24253 46.451 46.329 46.572 -0.033417 33 11 3 0 0 0 0.10734 1 24986 24986 29.841 0 1 6772200 + 78330 23071 52460 53570 91008 91008 0.1255206978780734 YLHVVAHFQN 10 Unmodified _YLHVVAHFQN_ 0 0 0 REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3 REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3 MSMS AL20221201_MKP_PDAC_01 4 614.3196411132812 2 614.317097 1226.61964 NaN NaN NaN NaN NaN NaN NaN 101.71 1 95.533 95.033 96.033 -6.1757 0 0 0 0.61917 1 68264 68264 20.454 1.1966 1 + 78331 22356 52461 53571 91009 91009 0.015396389744864791 YLIALDDLD 9 Unmodified _YLIALDDLD_ 0 0 0 REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.8507080078125 3 350.849974 1049.52809 -0.26949 -9.4549E-05 1.5747 0.00055248 1.3052 0.00045793 350.8504847378601 40.611 0.2109 40.611 40.529 40.739 0 19 11 2 0 0 0 0.32235 1 21854 21854 16.149 7.9936 1 7348600 + 78332 22650 52462 53572 91010 91010 0.005309107666107593 YLIALDDLD 9 Unmodified _YLIALDDLD_ 0 0 0 REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 350.849974 1049.52809 -0.26949 -9.4549E-05 1.5747 0.00055248 1.3052 0.00045793 350.8504847378601 40.611 0.2109 40.611 40.529 40.739 0 -0.026951 0.00019722 NaN 16.149 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 7348600 + 78333 22650 52462 53572 0.005309107666107593 YLIALDDLD 9 Unmodified _YLIALDDLD_ 0 0 0 REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF REV__ENST00000485720.1_1_1:60125899-60125998:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 350.849974 1049.52809 0.29484 0.00010344 0.98383 0.00034518 1.2787 0.00044862 350.8502524559604 40.968 0.17462 40.665 40.601 40.776 -0.30304 0.026951 -0.00042468 NaN 16.149 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1760200 + 78334 22650 52462 53572 0.005309107666107593 YLIALSSCTIF 11 Unmodified _YLIALSSCTIF_ 0 0 0 REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.2951049804688 2 615.825575 1229.6366 0.56051 0.00034518 -1.2609 -0.00077652 -0.70043 -0.00043134 615.8244881646215 92.367 0.24384 91.886 91.768 92.012 -0.48093 17 10 2 0 0 0 0.29947 1 50478 50478 6.7232 0.51738 1 377820 + 78335 26372 52463 53573 91011 91011 0.03096378745385664 YLIAPDSR 8 Unmodified _YLIAPDSR_ 0 0 0 REV__nc|ENSG00000154678|Q14123-2|PDE1C REV__nc|ENSG00000154678|Q14123-2|PDE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7535400390625 2 467.753267 933.491981 -0.59807 -0.00027975 1.8523 0.00086643 1.2542 0.00058668 467.75414694597674 18.243 0.088058 18.256 18.216 18.304 0.013865 37 21 2 0 0 0 0.76266 1 9126 9126 11.64 0 1 1187400 + 78336 21239 52464 53574 91012 91012 0.022574983804247495 YLIDEPSAYL 10 Unmodified _YLIDEPSAYL_ 0 0 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENST00000510321.1_1_4:146044244-146044510:+|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2978515625 2 592.297704 1182.58086 0.078127 4.6274E-05 0.054246 3.213E-05 0.13237 7.8404E-05 592.2978841707439 76.899 0.23276 76.899 76.708 76.941 0 15 11 2 0 0 0 0.63089 1 42722 42722 15.847 10.617 1 2144000 78337 7151 52465 53575 91013 91013 -0.003131311705601547 YLIDTRDFL 9 Unmodified _YLIDTRDFL_ 0 0 0 REV__ENST00000262741.9_2_1:46597532-46597583:-|nuORF REV__ENST00000262741.9_2_1:46597532-46597583:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.3052978515625 2 578.305864 1154.59717 0.28603 0.00016541 0.13944 8.0639E-05 0.42547 0.00024605 578.3058328651792 56.438 0.17183 56.37 56.266 56.438 -0.068737 15 8 2 0 0 0 0.1773 1 30695 30695 25.399 2.2509 1 5068700 + 78338 25031 52466 53576 91014 91014 0.02605994786199517 YLIEKELL 8 Unmodified _YLIEKELL_ 0 0 0 REV__nc|ENSG00000102038|P28370-2|SMARCA1 REV__nc|ENSG00000102038|P28370-2|SMARCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 510.8023071289062 2 510.802426 1019.5903 NaN NaN NaN NaN NaN NaN NaN 90.764 1 90.269 89.769 90.769 -0.49457 0 0 0 0.94749 1 49612 49612 11.114 0 1 + 78339 18217 52467 53577 91015 91015 0.08128681905623125 YLIENTMHI 9 Unmodified _YLIENTMHI_ 0 0 0 ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6;nc|ENSG00000115423|Q9C0G6-3|DNAH6;ENST00000476689.5_1_2:84775422-84811380:+|nuORF ENSG00000115423|ENST00000389394|DNAH6 ENSG00000115423|ENST00000389394|DNAH6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.284912109375 2 567.286617 1132.55868 NaN NaN NaN NaN NaN NaN NaN 75.325 1 74.848 74.348 75.348 -0.47714 0 0 0 0.54015 1 41231 41231 14.582 4.3983 1 78340 3124 52468 53578 91016 91016 -0.002296341199780727 YLIHFPVSV 9 Unmodified _YLIHFPVSV_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 537.802001953125 2 537.80276 1073.59097 0.042205 2.2698E-05 -0.81836 -0.00044012 -0.77616 -0.00041742 537.8029804420261 80.268 0.29671 80.325 80.198 80.495 0.057587 24 15 2 0 0 0 0.0081063 1 44352 44352 93.883 53.435 1 19384000 78341 6130 52469 53579 91017 91017 0.057115213453243996 YLIHFPVSV 9 Unmodified _YLIHFPVSV_ 0 0 0 ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF ENSG00000187134|ENST00000380872|AKR1C1 ENSG00000187134|ENST00000380872|AKR1C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.8038940429688 2 537.80276 1073.59097 1.1379 0.00061195 0.60035 0.00032287 1.7382 0.00093482 537.802944253158 96.803 0.3553 90.628 90.472 90.827 -6.1757 55 20 3 0 0 0 0.013472 2 64125 64125;64247 70.716 46.042 1 96957000 78342 6130 52469 53579 91018;91019 91018 0.057115213453243996 YLIHTGQKPF 10 Unmodified _YLIHTGQKPF_ 0 0 0 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 ENSG00000198146|ENST00000356321|ZNF770 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.834228515625 2 602.329673 1202.64479 0.60722 0.00036575 1.5272 0.00091985 2.1344 0.0012856 602.3312824328184 96.265 0.54018 90.089 89.73 90.27 -6.1757 88 32 5 0 0 0 0.1942 1 63895 63895 34.402 16.255 1 59051000 78343 10054 52470 53580 91020 91020 0.051576937770278164 YLIKDIRFL 9 Unmodified _YLIKDIRFL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.2408447265625 3 394.241137 1179.70158 1.1763 0.00046374 0.037603 1.4825E-05 1.2139 0.00047856 394.2411146704641 74.35 2.2542 68.175 67.326 69.58 -6.1757 343 118 4 0 0 0 0.37578 1 49227 49227 13.615 0 1 119030000 78344 1742 52471 53581 91021 91021 0.11891741333556638 YLIKDIRFL 9 Unmodified _YLIKDIRFL_ 0 0 0 nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000466614.1_1_22:30983271-30987820:-|nuORF nc|ENSG00000100029|O00541-2|PES1 nc|ENSG00000100029|O00541-2|PES1 MSMS AL20221201_MKP_PDAC_01 4 394.2407531738281 3 394.241137 1179.70158 NaN NaN NaN NaN NaN NaN NaN 75.641 1 69.466 68.966 69.966 -6.1757 0 0 0 0.43047 1 49476 49476 18.373 0.93045 1 78345 1742 52471 53581 91022 91022 0.11891741333556638 YLIKMGNADIF 11 Unmodified _YLIKMGNADIF_ 0 0 0 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 643.3345947265625 2 642.836474 1283.65839 0.98499 0.00063319 -3.8784 -0.0024932 -2.8934 -0.00186 643.334674937013 98.449 0.086594 92.274 92.221 92.308 -6.1757 7 5 2 0 0 0 0.27675 1 65322 65322 20.415 2.2682 1 9372300 + 78346 20033 52472 53582 91023 91023 0.02791183493968674 YLILGGSK 8 Unmodified _YLILGGSK_ 0 0 0 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.7550964355469 2 425.755278 849.496004 -0.28958 -0.00012329 1.6679 0.00071011 1.3783 0.00058682 425.7559480311703 37.004 0.2006 36.755 36.667 36.867 -0.2497 14 8 2 0 0 0 0.54555 1 19450 19450 30.637 3.7529 1 1058100 + 78347 29486 52473 53583 91024 91024 0.06523587874153236 YLILGGSK 8 Unmodified _YLILGGSK_ 0 0 0 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 REV__nc|ENSG00000021645|Q9HDB5|NRXN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.7548828125 2 425.755278 849.496004 -0.044637 -1.9004E-05 0.10675 4.5449E-05 0.062113 2.6445E-05 425.75493055166146 39.441 0.1947 39.143 39.049 39.243 -0.29716 13 8 2 0 0 0 0.54555 1 20820 20820 30.637 3.7529 1 1782500 + 78348 29486 52473 53583 91025 91025 0.06523587874153236 YLINEIDRI 9 Unmodified _YLINEIDRI_ 0 0 0 nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST nc|ENSG00000151914|Q03001-3|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.8191528320312 2 574.819138 1147.62372 0.37896 0.00021783 -1.5696 -0.00090223 -1.1906 -0.0006844 574.8183683111487 65.792 0.27273 65.792 65.572 65.845 0 19 12 2 0 0 0 0.073961 1 36656 36656 49.554 24.155 1 2811100 78349 6155;16276;16275 52474 53584 91026 91026 0.055816836775193224 YLINLKRLL 9 Unmodified _YLINLKRLL_ 0 0 0 ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF ENST00000361908.7_1_3:193374935-193376676:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5854797363281 3 382.585015 1144.73321 1.7346 0.00066361 -0.75171 -0.00028759 0.98284 0.00037602 382.58471799979145 88.163 0.63951 81.988 81.652 82.292 -6.1757 86 35 3 0 0 0 0.10247 1 58229 58229 32.786 6.5175 1 25042000 78350 12197 52475 53585 91027 91027 0.16663734087524062 YLIPDIDLKL 10 Unmodified _YLIPDIDLKL_ 0 0 0 ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 ENSG00000173473|ENST00000254480|SMARCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.8546142578125 2 601.855189 1201.69583 0.17097 0.0001029 -1.1423 -0.00068748 -0.9713 -0.00058458 601.8543279641581 99.158 0.12496 92.982 92.923 93.048 -6.1757 11 6 2 0 0 0 0.069578 1 65962 65962 61.602 17.83 1 47783000 78351 8329 52476 53586 91028 91028 0.10304598031234491 YLIPLLERL 9 Unmodified _YLIPLLERL_ 0 0 0 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 ENSG00000110367|ENST00000534980|DDX6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.3538818359375 2 565.352617 1128.69068 1.4141 0.00079945 -0.31589 -0.00017859 1.0982 0.00062086 565.3523037491293 100.21 0.14929 94.03 93.938 94.088 -6.1757 23 8 4 0 0 0 0.0074135 1 66927 66927 110.67 25.033 1 73877000 78352 2715 52477 53587 91029 91029 0.13148338959263128 YLISGPVNDYI 11 Unmodified _YLISGPVNDYI_ 0 0 0 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 REV__nc|ENSG00000164741|Q96QB1-4|DLC1 MSMS AL20221201_MKP_PDAC_01 4 627.3283081054688 2 627.324254 1252.63395 NaN NaN NaN NaN NaN NaN NaN 76.075 1 69.899 69.399 70.399 -6.1757 0 0 0 0.52067 1 49763 49763 23.79 6.8475 1 + 78353 21943 52478 53588 91030 91030 0.01774246612103525 YLITLLEHL 9 Unmodified _YLITLLEHL_ 0 0 0 ENSG00000169679|ENST00000302759|BUB1;nc|ENSG00000169679|O43683-3|BUB1;nc|ENSG00000169679|O43683-2|BUB1;ENST00000465029.5_1_2:111419157-111435602:-|nuORF ENSG00000169679|ENST00000302759|BUB1 ENSG00000169679|ENST00000302759|BUB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.830322265625 2 557.828975 1113.6434 2.3869 0.0013315 -0.30859 -0.00017214 2.0783 0.0011593 557.8288227483303 95.067 0.27055 95.072 94.942 95.213 0.004158 20 9 3 0 0 0 0.05483 1 52831 52831 57.471 21.427 1 1794400 78354 7898 52479 53589 91031 91031 0.09112059688277441 YLKAPLDFE 9 Unmodified _YLKAPLDFE_ 0 0 0 nc|ENSG00000290894|Q96TA0|PCDHB18P nc|ENSG00000290894|Q96TA0|PCDHB18P nc|ENSG00000290894|Q96TA0|PCDHB18P MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.29345703125 2 548.289682 1094.56481 1.1113 0.00060934 2.8501 0.0015627 3.9614 0.002172 548.2910376351527 81.455 0.29977 75.279 75.182 75.481 -6.1757 27 16 2 0 0 0 0.19127 1 53588 53588 24.021 3.5669 1 8901700 78355 16639 52480 53590 91032 91032 0.02131207383195033 YLKAVFWHRFR 11 Unmodified _YLKAVFWHRFR_ 0 0 0 REV__ENSG00000104783|ENST00000648319|KCNN4 REV__ENSG00000104783|ENST00000648319|KCNN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2870483398438 3 508.285851 1521.83572 1.459 0.0007416 0.86735 0.00044086 2.3264 0.0011825 508.2860323325758 98.273 0.18997 92.098 92 92.19 -6.1757 34 12 4 0 0 0 0.71618 1 65154 65154 1.1098 0.6038 1 81992000 + 78356 18372 52481 53591 91033 91033 0.09567819878952832 YLKDFFSNV 9 Unmodified _YLKDFFSNV_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.835693359375 2 566.787307 1131.56006 1.2387 0.00070208 1.9108 0.001083 3.1495 0.0017851 566.7884584981146 66.413 0.26044 66.422 66.301 66.561 0.0095596 33 12 3 0 0 0 0.11283 1 36410 36410 51.63 30.759 1 5442900 78357 2482 52482 53592 91034 91034 -0.0004567675957787287 YLKDFFSNV 9 Unmodified _YLKDFFSNV_ 0 0 0 ENSG00000107201|ENST00000379883|RIGI;nc|ENSG00000107201|O95786-2|RIGI ENSG00000107201|ENST00000379883|RIGI ENSG00000107201|ENST00000379883|RIGI MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 566.787307 1131.56006 0.47714 0.00027044 0.3751 0.0002126 0.85224 0.00048304 566.7878571544011 66.965 0.27596 66.481 66.314 66.59 -0.48323 0.029674 -0.0014065 NaN 51.63 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 792980 78358 2482 52482 53592 -0.0004567675957787287 YLKDLIEEV 9 Unmodified _YLKDLIEEV_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.3087158203125 2 561.308072 1120.60159 0.27045 0.0001518 0.33079 0.00018567 0.60124 0.00033748 561.3078732419269 65.008 0.37708 65.008 64.919 65.296 0 59 16 5 0 0 0 0.062454 2 36349 36242;36349 41.956 14.155 1 41419000 78359 4055 52483 53593 91035;91036 91036 0.046114592090816586 YLKDLIEEV 9 Unmodified _YLKDLIEEV_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 561.305908203125 2 561.308072 1120.60159 0.3155 0.00017709 -0.43161 -0.00024227 -0.11611 -6.5174E-05 561.3072048222793 65.514 0.3551 65.03 64.959 65.314 -0.48428 22 15 2 0 0 0 0.2324 1 35764 35764 20.415 6.5085 1 20426000 78360 4055 52483 53593 91037 91037 0.046114592090816586 YLKDLIEEV 9 Unmodified _YLKDLIEEV_ 0 0 0 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 ENSG00000128272|ENST00000674920|ATF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.3088989257812 2 561.308072 1120.60159 1.201 0.00067414 -0.44716 -0.000251 0.75385 0.00042314 561.3078457473274 81.598 1.4446 75.422 74.679 76.124 -6.1757 187 81 3 0 0 0 0.0093064 2 53743 53618;53743 83.429 25.707 1 46098000 78361 4055 52483 53593 91038;91039 91039 0.046114592090816586 YLKDLWTTF 9 Unmodified _YLKDLWTTF_ 0 0 0 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3137817382812 2 593.810782 1185.60701 0.16084 9.5506E-05 0.011338 6.7328E-06 0.17217 0.00010224 593.8108778161893 62.648 0.28503 62.626 62.486 62.771 -0.021614 40 14 4 0 0 0 0.11005 1 34226 34226 41.84 5.7126 1 12743000 78362 8708 52484 53594 91040 91040 0.021631827915371105 YLKDLWTTF 9 Unmodified _YLKDLWTTF_ 0 0 0 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 593.8109130859375 2 593.810782 1185.60701 0.88967 0.00052829 -0.16592 -9.8523E-05 0.72375 0.00042977 593.8105043014476 89.439 0.52176 83.263 82.986 83.508 -6.1757 70 28 3 0 0 0 0.11005 2 58904 58904;59159 41.84 14.956 1 61028000 78363 8708 52484 53594 91041;91042 91041 0.021631827915371105 YLKDLWTTFI 10 Unmodified _YLKDLWTTFI_ 0 0 0 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 ENSG00000177807|ENST00000644903|KCNJ10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 434.2400817871094 3 433.904301 1298.69108 1.2904 0.00055991 -0.36615 -0.00015888 0.92424 0.00040103 433.90402943100037 89.481 0.39597 83.306 83.022 83.418 -6.1757 45 21 3 0 0 0 0.67413 1 59136 59136 5.7834 0.38072 1 17067000 78364 8708 52485 53595 91043 91043 0.053677138884495434 YLKECILII 9 Unmodified _YLKECILII_ 0 0 0 ENSG00000145088|ENST00000273668|EAF2 ENSG00000145088|ENST00000273668|EAF2 ENSG00000145088|ENST00000273668|EAF2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.328125 2 554.327753 1106.64095 NaN NaN NaN NaN NaN NaN NaN 65.471 1 64.987 64.487 65.487 -0.48428 0 0 0 0.7243 1 35735 35735 8.5933 0 1 78365 5666 52486 53596 91044 91044 0.09189887958973486 YLKEKHGVI 9 Unmodified _YLKEKHGVI_ 0 0 0 ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7;ENST00000468058.1_1_19:7975099-7977313:+|nuORF;nc|ENSG00000076984|O14733-3|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 ENSG00000076984|ENST00000397979|MAP2K7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8832397460938 3 362.88172 1085.62333 0.69862 0.00025352 -0.57301 -0.00020793 0.12561 4.5583E-05 362.8816609783156 26.008 0.23219 23.057 22.88 23.112 -2.9511 23 15 2 0 0 0 0.095405 1 14240 14240 24.991 8.4251 1 6037700 78366 1200 52487 53597 91045 91045 0.08394308748324875 YLKFVQSFSL 10 Unmodified _YLKFVQSFSL_ 0 0 0 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 REV__nc|ENSG00000089053|Q9UJX4-3|ANAPC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 411.231201171875 3 411.228897 1230.66486 0.46807 0.00019248 2.019 0.00083025 2.487 0.0010227 411.2310008756919 56.899 0.17492 56.83 56.74 56.915 -0.068737 11 8 2 0 0 0 0.69377 1 30977 30977 1.7423 0.52744 1 2447400 + 78367 17827 52488 53598 91046 91046 0.0587544471700312 YLKGHAEVW 9 Unmodified _YLKGHAEVW_ 0 0 0 REV__ENST00000432228.1_1_2:222826463-222827672:+|nuORF REV__ENST00000432228.1_1_2:222826463-222827672:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.1963195800781 3 368.194186 1101.56073 1.4784 0.00054434 -1.2059 -0.000444 0.27252 0.00010034 368.1940499665948 38.201 0.49291 33.832 33.565 34.058 -4.3689 98 29 5 0 0 0 0.4887 1 22471 22471 8.1555 1.0538 1 58386000 + 78368 18849 52489 53599 91047 91047 0.0140116268012207 YLKGKFLESI 10 Unmodified _YLKGKFLESI_ 0 0 0 REV__ENSG00000144357|ENST00000272793|UBR3 REV__ENSG00000144357|ENST00000272793|UBR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 400.2343444824219 3 399.90078 1196.68051 1.4048 0.0005618 -1.4268 -0.00057057 -0.021943 -8.7749E-06 399.90074404600176 95.501 0.11734 89.325 89.282 89.399 -6.1757 8 6 2 0 0 0 0.49559 1 63276 63276 16.566 0 1 8154000 + 78369 20701 52490 53600 91048 91048 0.09003731234020051 YLKIFKEQLS 10 Unmodified _YLKIFKEQLS_ 0 0 0 CON__Q2YDI2 CON__Q2YDI2 CON__Q2YDI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8670043945312 2 634.866089 1267.71762 0.10267 6.5184E-05 0.88952 0.00056472 0.99219 0.00062991 634.866732817135 101.42 0.066101 101.42 101.39 101.45 0 4 2 2 0 0 0 0.72247 1 55965 55965 0.40072 0 1 795490 + 78370 197 52491 53601 91049 91049 0.0944740277980145 YLKIKHVF 8 Unmodified _YLKIKHVF_ 0 0 0 ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF ENST00000457361.5_1_2:213869864-213869993:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.3236694335938 2 524.32112 1046.62769 NaN NaN NaN NaN NaN NaN NaN 25.843 1 25.87 25.37 26.37 0.026951 0 0 0 0.97444 1 13392 13392 0.79363 0 1 78371 13610 52492 53602 91050 91050 0.10623817961868554 YLKKPYRFP 9 Unmodified _YLKKPYRFP_ 0 0 0 REV__chrX:149496507-149498107|37|10.19|0.0|19.96|-|0|None,IDS|1 REV__chrX:149496507-149498107|37|10.19|0.0|19.96|-|0|None,IDS|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5686645507812 3 404.569365 1210.68626 NaN NaN NaN NaN NaN NaN NaN 17.468 1 17.473 16.973 17.973 0.0050564 0 0 0 0.86004 1 8811 8811 0.26902 0 1 + 78372 16820 52493 53603 91051 91051 0.08934874536362258 YLKLAENYL 9 Unmodified _YLKLAENYL_ 0 0 0 REV__ENSG00000070061|ENST00000374647|ELP1 REV__ENSG00000070061|ENST00000374647|ELP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.8151245117188 2 563.810782 1125.60701 0.89778 0.00050618 0.14236 8.0266E-05 1.0401 0.00058645 563.8107980212942 68.42 0.40067 68.445 68.241 68.642 0.025154 106 19 8 0 0 0 0.46577 1 37548 37548 9.3474 0 1 166740000 + 78373 17463 52494 53604 91052 91052 0.04923182791549152 YLKLAKKRK 9 Unmodified _YLKLAKKRK_ 0 0 0 ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000524481.5_1_6:128321419-128841710:-|nuORF;ENST00000531050.5_1_6:128321419-128718758:-|nuORF ENST00000524481.5_1_6:128321419-128841710:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.387451171875 2 574.387326 1146.7601 1.6421 0.00094317 -0.16895 -9.7046E-05 1.4731 0.00084613 574.3876508456798 105.71 0.23108 99.539 99.455 99.686 -6.1757 40 21 2 0 0 0 0.61381 1 70819 70819 0.52476 0.066424 1 4926700 78374 14777;14900 52495 53605 91053 91053 0.19258842698673106 YLKLKMII 8 Unmodified _YLKLKMII_ 0 0 0 REV__ENST00000441178.2_1_10:105006485-105006641:+|nuORF REV__ENST00000441178.2_1_10:105006485-105006641:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.3270874023438 2 511.327556 1020.64056 1.0952 0.00055999 -0.27674 -0.00014151 0.81843 0.00041848 511.3272983887192 97.764 0.45909 91.588 91.403 91.862 -6.1757 74 29 3 0 0 0 0.80044 2 64727 64727;64861 6.3541 0 1 66244000 + 78375 27085 52496 53606 91054;91055 91054 0.13106513029777034 YLKLRHWQWWR 11 Unmodified _YLKLRHWQWWR_ 0 0 0 nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10 nc|ENSG00000105357|Q7Z406-6|MYH14;nc|ENSG00000133026|P35580|MYH10 nc|ENSG00000105357|Q7Z406-6|MYH14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4517211914062 2 836.454594 1670.89463 NaN NaN NaN NaN NaN NaN NaN 39.419 1 39.419 38.919 39.919 0 0 0 0 0.9435 1 21124 21124 0 0 1 78376 2308;4478 52497 53607 91056 91056 0.0860229617328514 YLKNEVYDI 9 Unmodified _YLKNEVYDI_ 0 0 0 REV__ENSG00000168702|ENST00000389484|LRP1B REV__ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2989501953125 2 578.797872 1155.58119 1.459 0.00084449 1.9311 0.0011177 3.3901 0.0019622 578.798647815085 58.922 0.89103 52.847 52.28 53.171 -6.0745 160 49 4 0 0 0 0.30562 1 37890 37890 16.942 0 1 339970000 + 78377 22334 52498 53608 91057 91057 0.009622885492944988 YLKNYFHL 8 Unmodified _YLKNYFHL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 366.5294494628906 3 366.530798 1096.57057 NaN NaN NaN NaN NaN NaN NaN 33.607 1 29.621 29.121 30.121 -3.9853 0 0 0 0.70013 1 19287 19287 21.747 2.3847 1 78378 1980 52499 53609 91058 91058 0.026143506855078158 YLKQKWVCEMA 11 Unmodified _YLKQKWVCEMA_ 0 0 0 REV__ENSG00000116701|ENST00000367535|NCF2 REV__ENSG00000116701|ENST00000367535|NCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.847900390625 2 699.849058 1397.68356 0.22346 0.00015639 -0.31079 -0.00021751 -0.087332 -6.1119E-05 699.8488018606196 59.545 0.87124 59.054 58.579 59.45 -0.49079 101 41 3 0 0 0 0.58219 2 32243 32243;32558 12.241 5.5175 1 3786200 + 78379 19060 52500 53610 91059;91060 91059 0.0006291502490967105 YLKQKWVCEMA 11 Unmodified _YLKQKWVCEMA_ 0 0 0 REV__ENSG00000116701|ENST00000367535|NCF2 REV__ENSG00000116701|ENST00000367535|NCF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 699.84912109375 2 699.849058 1397.68356 0.53183 0.0003722 -0.30199 -0.00021135 0.22984 0.00016085 699.8487601505398 64.421 0.74417 63.936 63.572 64.316 -0.48512 77 34 3 0 0 0 0.58219 2 35217 35217;35337 12.241 2.8575 1 1817600 + 78380 19060 52500 53610 91061;91062 91061 0.0006291502490967105 YLKRVKHP 8 Unmodified _YLKRVKHP_ 0 0 0 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 REV__nc|ENSG00000079337|O95398-3|RAPGEF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.821533203125 2 520.821818 1039.62908 0.43961 0.00022896 -0.069445 -3.6169E-05 0.37016 0.00019279 520.8216490187776 52.166 0.26835 52.107 51.961 52.229 -0.058918 32 12 3 0 0 0 0.72953 1 28229 28229 14.582 0 1 6941800 + 78381 17647 52501 53611 91063 91063 0.11085452050656386 YLKSCFLIF 9 Unmodified _YLKSCFLIF_ 0 0 0 nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 nc|ENSG00000107331|Q9BZC7|ABCA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.30419921875 2 567.306821 1132.59909 NaN NaN NaN NaN NaN NaN NaN 57.491 1 57.425 56.925 57.925 -0.066036 0 0 0 0.50124 1 31294 31294 15.847 1.0089 1 78382 2490 52502 53612 91064 91064 0.03809332270429877 YLKSSYLI 8 Unmodified _YLKSSYLI_ 0 0 0 REV__ENST00000474988.5_1_6:36410818-36454949:+|nuORF;REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20 REV__nc|ENSG00000112078|Q7Z5Y7-3|KCTD20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.2825317382812 2 493.781493 985.548434 0.14651 7.2345E-05 -0.87495 -0.00043204 -0.72844 -0.00035969 493.78170196331587 93.226 0.92346 87.05 86.712 87.636 -6.1757 137 62 3 0 0 0 0.57045 1 61512 61512 28.487 0 1 92766000 + 78383 27568;18784 52503 53613 91065 91065 0.055081262171029266 YLKSTFSKT 9 Unmodified _YLKSTFSKT_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.8662719726562 3 358.865847 1073.57571 1.0921 0.00039191 -0.64974 -0.00023317 0.44234 0.00015874 358.86553623936345 27.884 0.4945 24.736 24.547 25.041 -3.1482 85 26 4 0 0 0 0.28023 2 15413 15413;15533 12.873 4.4283 1 150190000 78384 4278;14369 52504 53614 91066;91067 91066 0.0418660975747116 YLKSTFSKT 9 Unmodified _YLKSTFSKT_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000492173.1_1_1:10718563-10720675:-|nuORF;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 358.865847 1073.57571 -0.38183 -0.00013703 -0.40996 -0.00014712 -0.79179 -0.00028415 358.8655899163349 24.579 0.26974 24.579 24.448 24.718 0 -0.078604 0.00013572 NaN 12.873 53 15 4 NaN NaN NaN NaN 0 NaN NaN 0 23036000 78385 4278;14369 52504 53614 0.0418660975747116 YLKTLSNLGRF 11 Unmodified _YLKTLSNLGRF_ 0 0 0 REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 REV__nc|ENSG00000171509|Q9HBX9-5|RXFP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.3236694335938 2 656.374612 1310.73467 1.5397 0.0010106 -1.0438 -0.00068512 0.4959 0.0003255 656.3742863096735 70.924 0.27579 70.96 70.81 71.086 0.035515 17 12 2 0 0 0 0.28953 1 39079 39079 13.042 3.6593 1 1942300 + 78386 22571 52505 53615 91068 91068 0.09173323385607546 YLKVPQNF 8 Unmodified _YLKVPQNF_ 0 0 0 REV__ENST00000587807.5_1_18:54270260-54293401:-|nuORF REV__ENST00000587807.5_1_18:54270260-54293401:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 504.792236328125 2 504.779285 1007.54402 1.4649 0.00073943 -2.4351 -0.0012292 -0.97024 -0.00048976 505.2797241755295 100.8 0.051437 94.629 94.584 94.635 -6.1757 5 3 2 0 0 0 8.7369 1 67480 67480 9.3474 5.0182 1 8722700 + 78387 17886 52506 53616 91069 91069 0.04054661794191361 YLLADCSEAF 10 Unmodified _YLLADCSEAF_ 0 0 0 nc|ENSG00000244588|Q9H4I0-2|RAD21L1;ENSG00000244588|ENST00000683101|RAD21L1;nc|ENSG00000244588|Q9H4I0|RAD21L1 nc|ENSG00000244588|Q9H4I0-2|RAD21L1 nc|ENSG00000244588|Q9H4I0-2|RAD21L1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 377.7255554199219 3 377.83908 1130.49541 0.89298 0.0003374 1.0643 0.00040214 1.9573 0.00073954 377.83925891045203 82.349 0.31784 76.173 75.97 76.288 -6.1757 26 16 2 0 0 0 0.23634 1 54121 54121 1.7423 0 1 7133900 78388 10731 52507 53617 91070 91070 -0.06461619627884829 YLLAERDL 8 Unmodified _YLLAERDL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2944641113281 2 496.7742 991.533846 0.5534 0.00027491 1.5612 0.00077555 2.1146 0.0010505 496.7750229547961 82.989 0.47334 82.491 82.224 82.698 -0.49751 32 19 2 0 0 0 8.7369 1 45471 45471 15.847 0 1 1110500 78389 10212;13830 52508 53618 91071 91071 0.037740540689469526 YLLAERDLYL 10 Unmodified _YLLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8470458984375 2 634.847896 1267.68124 -0.23442 -0.00014882 -0.053802 -3.4156E-05 -0.28822 -0.00018298 634.8476806131486 71.449 0.27496 71.449 71.324 71.599 0 18 12 2 0 0 0 0.39161 1 39829 39829 30.703 7.9672 1 914630 78390 10212;13830 52509 53619 91072 91072 0.058105258830892126 YLLAERDLYL 10 Unmodified _YLLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.3504638671875 2 634.847896 1267.68124 0.22904 0.00014541 1.1063 0.00070233 1.3353 0.00084773 634.8485866442569 71.899 0.30702 71.423 71.242 71.549 -0.47609 35 11 4 0 0 0 0.18128 2 39305 39305;39398 47.732 21.464 1 6191600 78391 10212;13830 52509 53619 91073;91074 91073 0.058105258830892126 YLLAERDLYL 10 Unmodified _YLLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8486938476562 2 634.847896 1267.68124 0.87676 0.00055661 -0.74207 -0.0004711 0.13468 8.5502E-05 634.8473906302195 87.454 0.61869 81.279 81.092 81.71 -6.1757 53 33 2 0 0 0 0.075273 2 57634 57634;57793 59.052 32.498 1 15768000 78392 10212;13830 52509 53619 91075;91076 91075 0.058105258830892126 YLLAERDLYL 10 Unmodified _YLLAERDLYL_ 0 0 0 ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF ENSG00000198959|ENST00000361475|TGM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 634.847896 1267.68124 0.95968 0.00060925 1.7654 0.0011208 2.7251 0.00173 634.8493590014506 71.316 0.2344 71.355 71.255 71.49 0.039024 -0.053954 0.0010267 NaN 47.732 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1208000 78393 10212;13830 52509 53619 0.058105258830892126 YLLAFIVSE 9 Unmodified _YLLAFIVSE_ 0 0 0 ENSG00000166825|ENST00000300060|ANPEP ENSG00000166825|ENST00000300060|ANPEP ENSG00000166825|ENST00000300060|ANPEP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.1993713378906 3 352.198826 1053.57465 NaN NaN NaN NaN NaN NaN NaN 41.71 1 41.708 41.208 42.208 -0.0017929 0 0 0 0.82739 1 22304 22304 2.4985 0 1 78394 7535 52510 53620 91077 91077 0.05000395388583456 YLLASQPVDK 10 Unmodified _YLLASQPVDK_ 0 0 0 nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L;nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L nc|ENSG00000126217|O15068-6|MCF2L nc|ENSG00000126217|O15068-6|MCF2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.312744140625 2 567.313689 1132.61282 -0.0055114 -3.1267E-06 -0.13382 -7.5919E-05 -0.13933 -7.9045E-05 567.3137927631143 41.836 0.20942 41.836 41.731 41.94 0 16 10 2 0 0 0 0.38092 1 22626 22626 22.736 0 1 2778800 78395 3932 52511 53621 91078 91078 0.05182281303223135 YLLATQSKQE 10 Unmodified _YLLATQSKQE_ 0 0 0 nc|ENSG00000113812|Q9H981-2|ACTR8;ENSG00000113812|ENST00000335754|ACTR8;nc|ENSG00000113812|Q9H981-3|ACTR8;ENST00000495993.1_1_3:53905208-53907064:-|nuORF nc|ENSG00000113812|Q9H981-2|ACTR8 nc|ENSG00000113812|Q9H981-2|ACTR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.8131103515625 2 590.814053 1179.61355 0.0088533 5.2307E-06 -0.40917 -0.00024174 -0.40032 -0.00023651 590.8136810306916 38.593 0.43277 38.306 38.003 38.435 -0.28687 36 20 3 0 0 0 0.095098 1 20368 20368 47.749 13.347 1 12200000 78396 3005 52512 53622 91079 91079 0.030930759523016604 YLLDKKNGF 9 Unmodified _YLLDKKNGF_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.3031616210938 2 549.303124 1096.5917 NaN NaN NaN NaN NaN NaN NaN 65.535 1 65.05 64.55 65.55 -0.48428 0 0 0 0.50124 1 35772 35772 15.847 1.9411 1 78397 8817 52513 53623 91080 91080 0.04726315994366814 YLLDLHSYL 9 Unmodified _YLLDLHSYL_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.8027954101562 2 568.802957 1135.59136 0.81495 0.00046355 0.091587 5.2095E-05 0.90654 0.00051564 568.8029649795081 82.148 0.34795 81.653 81.471 81.819 -0.4952 32 13 3 0 0 0 0.11784 1 44950 44950 42.095 7.9921 1 2560600 78398 5701 52514 53624 91081 91081 0.028988962745188473 YLLDLHSYL 9 Unmodified _YLLDLHSYL_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8038940429688 2 568.802957 1135.59136 1.7534 0.00099736 0.27864 0.00015849 2.0321 0.0011559 568.8030557893194 81.594 0.40705 81.654 81.452 81.86 0.059929 49 15 4 0 0 0 0.023481 2 45083 45083;45190 77.984 13.748 1 21786000 78399 5701 52514 53624 91082;91083 91082 0.028988962745188473 YLLDLHSYL 9 Unmodified _YLLDLHSYL_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.8042602539062 2 568.802957 1135.59136 1.5353 0.00087328 0.29557 0.00016812 1.8309 0.0010414 568.8030205951901 97.315 0.33533 91.139 90.96 91.295 -6.1757 47 18 3 0 0 0 0.0086209 2 64432 64432;64547 112.59 21.689 1 113400000 78400 5701 52514 53624 91084;91085 91084 0.028988962745188473 YLLDLHSYLL 10 Unmodified _YLLDLHSYLL_ 0 0 0 ENSG00000145495|ENST00000274140|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;nc|ENSG00000145495|O60337-6|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 ENSG00000145495|ENST00000274140|MARCHF6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3455200195312 2 625.344989 1248.67542 1.7919 0.0011205 -1.2957 -0.00081024 0.49621 0.0003103 625.3444363695537 92.705 0.25583 92.736 92.599 92.854 0.030197 23 9 3 0 0 0 0.0057604 1 51577 51577 96.285 63.499 1 3013600 78401 5701 52515 53625 91086 91086 0.0610342737143128 YLLDQHILI 9 Unmodified _YLLDQHILI_ 0 0 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.8273315429688 2 564.326599 1126.63865 -0.47962 -0.00027066 0.43488 0.00024542 -0.04474 -2.5248E-05 564.3268923267043 77.502 0.27415 77.019 76.892 77.166 -0.4826 22 13 2 0 0 0 0.2143 1 42421 42421 21.747 9.2151 1 1559000 78402 7815 52516 53626 91087 91087 0.08039175545536636 YLLEHLHPF 9 Unmodified _YLLEHLHPF_ 0 0 0 ENST00000460321.5_1_3:118935188-118955715:-|nuORF;ENSG00000121578|ENST00000393765|B4GALT4 ENST00000460321.5_1_3:118935188-118955715:-|nuORF ENST00000460321.5_1_3:118935188-118955715:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.2112731933594 3 390.209836 1167.60768 NaN NaN NaN NaN NaN NaN NaN 80.008 1 73.832 73.332 74.332 -6.1757 0 0 0 0.56093 1 52472 52472 13.906 2.4113 1 78403 3588 52517 53627 91088 91088 0.030580222312664773 YLLEPAYFY 9 Unmodified _YLLEPAYFY_ 0 0 0 REV__CON__P02769 REV__CON__P02769 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.5310668945312 3 393.530464 1177.56956 -0.45056 -0.00017731 0.22391 8.8117E-05 -0.22665 -8.9193E-05 393.53068169986085 24.853 0.12504 24.853 24.76 24.885 0 10 5 2 0 0 0 0.58466 1 12701 12701 1.1933 0 1 657690 + + 78404 16843 52518 53628 91089 91089 -0.012119084740561448 YLLEQLKERFK 11 Unmodified _YLLEQLKERFK_ 0 0 0 ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS ENSG00000164430|ENST00000370315|CGAS ENSG00000164430|ENST00000370315|CGAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.6177673339844 3 489.617043 1465.8293 0.6763 0.00033113 0.6211 0.0003041 1.2974 0.00063523 489.61807759337904 59.158 0.44638 59.097 58.819 59.265 -0.060719 62 21 4 0 0 0 0.73114 1 32136 32136 1.3296 0 1 5947200 78405 7194 52519 53629 91090 91090 0.11501837136916038 YLLERYRIRF 10 Unmodified _YLLERYRIRF_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 476.9404602050781 3 476.941861 1427.80375 NaN NaN NaN NaN NaN NaN NaN 98.717 1 92.542 92.042 93.042 -6.1757 0 0 0 0.98692 1 65523 65523 2.086 0.63089 1 + 78406 17447 52520 53630 91091 91091 0.10696407405134778 YLLESVNKL 9 Unmodified _YLLESVNKL_ 0 0 0 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.8107299804688 2 539.810782 1077.60701 0.30325 0.0001637 -0.82429 -0.00044496 -0.52105 -0.00028127 539.8103047179857 57.522 0.28656 57.032 56.88 57.166 -0.48974 33 13 3 0 0 0 0.0082661 1 31231 31231 92.491 24.411 1 12349000 78407 9984 52521 53631 91092 91092 0.0713118279156788 YLLESVNKL 9 Unmodified _YLLESVNKL_ 0 0 0 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.8114013671875 2 539.810782 1077.60701 0.83287 0.00044959 -2.1422 -0.0011564 -1.3093 -0.00070677 539.8105856156257 63.527 0.64248 57.352 57.094 57.737 -6.1757 91 36 4 0 0 0 0.0082661 2 41183 41044;41183 92.491 24.411 1 46077000 78408 9984 52521 53631 91093;91094 91094 0.0713118279156788 YLLESVNKL 9 Unmodified _YLLESVNKL_ 0 0 0 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 539.810782 1077.60701 0.48911 0.00026403 0.39824 0.00021497 0.88735 0.000479 539.8108919359693 57.052 0.18894 57.052 56.922 57.111 0 -0.083126 0.00099153 NaN 92.491 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1121000 78409 9984 52521 53631 0.0713118279156788 YLLESVNKL 9 Unmodified _YLLESVNKL_ 0 0 0 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 ENSG00000197632|ENST00000299502|SERPINB2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 539.810782 1077.60701 0.73143 0.00039483 0.095419 5.1508E-05 0.82685 0.00044634 539.8107374879716 57.172 0.16265 57.106 56.978 57.14 -0.066036 -0.029547 0.0006646 NaN 92.491 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2009800 78410 9984 52521 53631 0.0713118279156788 YLLFQVLMK 9 Unmodified _YLLFQVLMK_ 0 0 0 REV__ENSG00000120289|ENST00000378982|MAGEB4 REV__ENSG00000120289|ENST00000378982|MAGEB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.3355102539062 2 577.835746 1153.65694 0.80496 0.00046513 0.29118 0.00016825 1.0961 0.00063339 578.3369671482848 66.161 0.56228 59.985 59.594 60.156 -6.1757 39 31 2 0 0 0 0.48152 1 43111 43111 8.5933 0.43775 1 14191000 + 78411 19236 52522 53632 91095 91095 0.08625594195837039 YLLGALASLL 10 Unmodified _YLLGALASLL_ 0 0 0 REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44 REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3185424804688 2 517.318243 1032.62193 0.55528 0.00028725 0.1649 8.5304E-05 0.72017 0.00037256 517.3182705018899 58.899 0.45784 58.838 58.607 59.065 -0.060719 73 22 4 0 0 0 0.19662 1 32112 32112 34.102 1.797 1 28482000 + 78412 20751 52523 53633 91096 91096 0.10692674659549084 YLLGALASLL 10 Unmodified _YLLGALASLL_ 0 0 0 REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44 REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.3192138671875 2 517.318243 1032.62193 1.2899 0.00066731 -0.060372 -3.1232E-05 1.2296 0.00063608 517.318245896653 64.547 0.94628 58.371 58.09 59.036 -6.1757 111 52 3 0 0 0 0.19662 2 41856 41856;41989 34.102 0 1 88478000 + 78413 20751 52523 53633 91097;91098 91097 0.10692674659549084 YLLGHDIRI 9 Unmodified _YLLGHDIRI_ 0 0 0 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 ENSG00000152127|ENST00000281923|MGAT5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2131042480469 3 367.213469 1098.61858 0.11075 4.0667E-05 -1.8793 -0.00069012 -1.7686 -0.00064945 367.21305820234545 54.826 0.17908 54.359 54.261 54.44 -0.46664 13 8 3 0 0 0 0.47359 1 29762 29762 8.9762 6.2411 1 1810700 78414 6165 52524 53634 91099 91099 0.07321424605561333 YLLGLWEGF 9 Unmodified _YLLGLWEGF_ 0 0 0 ENST00000251473.9_1_19:11476091-11476349:+|nuORF ENST00000251473.9_1_19:11476091-11476349:+|nuORF ENST00000251473.9_1_19:11476091-11476349:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2863159179688 2 549.286943 1096.55933 -0.16692 -9.1688E-05 1.2703 0.00069777 1.1034 0.00060608 549.2877815342046 51.462 0.44921 51.049 50.856 51.305 -0.41351 59 23 4 0 0 0 0.14602 1 27808 27808 28.487 0 1 15252000 78415 11145 52525 53635 91100 91100 0.014915285913730258 YLLGSASLLL 10 Unmodified _YLLGSASLLL_ 0 0 0 ENSG00000114395|ENST00000425346|CYB561D2 ENSG00000114395|ENST00000425346|CYB561D2 ENSG00000114395|ENST00000425346|CYB561D2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.316162109375 2 525.3157 1048.61685 0.25719 0.00013511 -0.045106 -2.3695E-05 0.21209 0.00011141 525.3155815844223 63.632 0.25869 63.146 63.016 63.274 -0.48617 25 11 3 0 0 0 0.14917 1 34681 34681 39.957 0 1 4011400 78416 3036 52526 53636 91101 91101 0.09448370796940253 YLLHAFMKA 9 Unmodified _YLLHAFMKA_ 0 0 0 REV__ENSG00000163510|ENST00000410053|CWC22 REV__ENSG00000163510|ENST00000410053|CWC22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.298095703125 2 547.296788 1092.57902 -0.042051 -2.3015E-05 2.7206 0.001489 2.6786 0.001466 547.2984853613929 37.725 0.16252 37.742 37.653 37.816 0.01704 12 7 2 0 0 0 0.30562 1 20048 20048 16.942 0 1 1265300 + 78417 21773 52527 53637 91102 91102 0.03643581330493362 YLLHREKRP 9 Unmodified _YLLHREKRP_ 0 0 0 REV__nc|ENSG00000136960|Q13822-3|ENPP2 REV__nc|ENSG00000136960|Q13822-3|ENPP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.5707092285156 3 404.571768 1210.69348 NaN NaN NaN NaN NaN NaN NaN 22.493 1 22.516 22.016 23.016 0.022896 0 0 0 0.85737 1 11444 11444 0.26902 0 1 + 78418 29650 52528 53638 91103 91103 0.09655607136801336 YLLHRTQQNI 10 Unmodified _YLLHRTQQNI_ 0 0 0 nc|ENSG00000187824|Q6QAJ8-2|TMEM220;ENSG00000187824|ENST00000341871|TMEM220 nc|ENSG00000187824|Q6QAJ8-2|TMEM220 nc|ENSG00000187824|Q6QAJ8-2|TMEM220 MSMS AL20221201_MKP_PDAC_01 4 643.356201171875 2 643.354211 1284.69387 NaN NaN NaN NaN NaN NaN NaN 95.304 1 89.129 88.629 89.629 -6.1757 0 0 0 0.61997 1 63124 63124 20.415 7.3721 1 78419 9599 52529 53639 91104 91104 0.06290982066025208 YLLIKLVKLK 10 Unmodified _YLLIKLVKLK_ 0 0 0 REV__nc|ENSG00000167302|Q96N21|TEPSIN REV__nc|ENSG00000167302|Q96N21|TEPSIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.9322509765625 2 615.931035 1229.84752 NaN NaN NaN NaN NaN NaN NaN 20.452 1 20.462 19.962 20.962 0.010553 0 0 0 1.0061 1 10432 10432 0 0 1 + 78420 22201 52530 53640 91105 91105 0.2417862384959335 YLLKCGESCFS 11 Unmodified _YLLKCGESCFS_ 0 0 0 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.1907958984375 3 417.191237 1248.55188 0.090322 3.7681E-05 -0.3362 -0.00014026 -0.24587 -0.00010258 417.1913446049449 42.591 0.22099 42.284 42.162 42.383 -0.30682 21 10 3 0 0 0 0.65846 1 22627 22627 4.1166 0 1 12186000 + 78421 20837 52531 53641 91106 91106 -0.062453150628698495 YLLKEDMAGI 10 Unmodified _YLLKEDMAGI_ 0 0 0 ENSG00000064763|ENST00000536681|FAR2;nc|ENSG00000064763|Q96K12-2|FAR2 ENSG00000064763|ENST00000536681|FAR2 ENSG00000064763|ENST00000536681|FAR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.8035888671875 2 576.8021 1151.58965 1.2396 0.00071498 -1.3184 -0.00076046 -0.078861 -4.5487E-05 576.8016710085044 87.825 1.2948 81.649 80.982 82.276 -6.1757 258 71 5 0 0 0 0.60623 1 57778 57778 10.824 0 1 235860000 78422 885 52532 53642 91107 91107 0.019915191942573074 YLLKFEQIYLS 11 Unmodified _YLLKFEQIYLS_ 0 0 0 ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B ENSG00000047315|ENST00000314595|POLR2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 708.892333984375 2 708.892303 1415.77005 NaN NaN NaN NaN NaN NaN NaN 81.886 1 81.886 81.386 82.386 0 0 0 0 0.9435 1 45440 45440 0 0 1 78423 681 52533 53643 91108 91108 0.07879941122769196 YLLKGLHRL 9 Unmodified _YLLKGLHRL_ 0 0 0 ENSG00000168447|ENST00000343070|SCNN1B;nc|ENSG00000168447|P51168-2|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B ENSG00000168447|ENST00000343070|SCNN1B MSMS AL20221201_MKP_PDAC_01 4 556.3712768554688 2 556.850576 1111.6866 NaN NaN NaN NaN NaN NaN NaN 105.88 1 99.704 99.204 100.2 -6.1757 0 0 0 0.85798 1 70910 70910 0.52476 0 1 78424 7766 52534 53644 91109 91109 0.1352229425619953 YLLLFFLFL 9 Unmodified _YLLLFFLFL_ 0 0 0 ENST00000389561.6_1_12:132563313-132563424:+|nuORF ENST00000389561.6_1_12:132563313-132563424:+|nuORF ENST00000389561.6_1_12:132563313-132563424:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8614501953125 2 594.857004 1187.69945 3.439 0.0020457 0.87465 0.00052029 4.3137 0.002566 594.8569014316346 98.141 0.24303 98.123 97.985 98.228 -0.018188 17 8 3 0 0 0 0.1492 1 54533 54533 28.173 7.302 1 590460 78425 12646 52535 53645 91110 91110 0.11311312595739764 YLLLGPMSI 9 Unmodified _YLLLGPMSI_ 0 0 0 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 ENSG00000124003|ENST00000446656|MOGAT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2518615722656 2 503.785721 1005.55689 -0.1172 -5.9046E-05 -2.2654 -0.0011413 -2.3826 -0.0012003 503.78468241458893 35.035 0.19009 35.035 34.939 35.129 0 13 9 2 0 0 0 0.20528 1 18544 18544 8.5933 0 1 1746600 78426 3742 52536 53646 91111 91111 0.0543335686206774 YLLLKTHQL 9 Unmodified _YLLLKTHQL_ 0 0 0 nc|ENSG00000126226|Q5JVF3-3|PCID2;nc|ENSG00000126226|Q5JVF3-2|PCID2;ENSG00000126226|ENST00000337344|PCID2;nc|ENSG00000126226|Q5JVF3-4|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 nc|ENSG00000126226|Q5JVF3-3|PCID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.8975524902344 3 376.89737 1127.67028 -0.094898 -3.5767E-05 0.65692 0.00024759 0.56202 0.00021182 376.89763496468885 44.924 0.08012 44.902 44.855 44.935 -0.022064 6 3 2 0 0 0 0.037253 1 24124 24124 51.415 27.625 1 4683800 78427 3934 52537 53647 91112 91112 0.11155168299455909 YLLLPEAAP 9 Unmodified _YLLLPEAAP_ 0 0 0 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7817993164062 2 493.781493 985.548434 0.14996 7.4047E-05 0.15866 7.8343E-05 0.30862 0.00015239 493.78164550910026 85.061 0.51 85.061 84.807 85.317 0 46 26 2 0 0 0 0.28047 2 47084 47084;47187 18.135 8.7875 1 2281300 78428 2926 52538 53648 91113;91114 91113 0.05508126217080189 YLLLPEAAP 9 Unmodified _YLLLPEAAP_ 0 0 0 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7820129394531 2 493.781493 985.548434 0.14651 7.2345E-05 -0.87495 -0.00043204 -0.72844 -0.00035969 493.78170196331587 93.226 0.92346 87.05 86.712 87.636 -6.1757 137 62 3 0 0 0 0.2001 1 61907 61907 23.148 0 1 92766000 78429 2926 52538 53648 91115 91115 0.05508126217080189 YLLLPEAAP 9 Unmodified _YLLLPEAAP_ 0 0 0 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 ENSG00000112852|ENST00000194155|PCDHB2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 493.781493 985.548434 0.14996 7.4047E-05 0.15866 7.8343E-05 0.30862 0.00015239 493.78164550910026 85.061 0.51 85.061 84.807 85.317 0 0 0 NaN 18.135 46 26 2 NaN NaN NaN NaN 0 NaN NaN 0 2281300 78430 2926 52538 53648 0.05508126217080189 YLLPAIVHI 9 Unmodified _YLLPAIVHI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.8213500976562 2 519.820953 1037.62735 0.39739 0.00020657 0.46566 0.00024206 0.86306 0.00044863 519.8211602679689 86.752 0.42288 86.249 86.02 86.443 -0.50318 50 16 4 0 0 0 0.047696 2 47417 47417;47510 45.75 17.263 1 10948000 78431 2594;1767 52539 53649 91116;91117 91116 0.11004398242016578 YLLPAIVHI 9 Unmodified _YLLPAIVHI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.3211059570312 2 519.820953 1037.62735 -0.28779 -0.0001496 -0.035927 -1.8676E-05 -0.32372 -0.00016828 519.8208757126991 86.084 0.28382 86.146 85.996 86.28 0.061646 49 18 3 0 0 0 0.028712 2 47649 47649;47805 56.048 16.091 1 317450000 78432 2594;1767 52539 53649 91118;91119 91118 0.11004398242016578 YLLPAIVHI 9 Unmodified _YLLPAIVHI_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17 ENSG00000108654|ENST00000225792|DDX5;ENST00000432525.5_1_22:38886367-38903636:-|nuORF ENSG00000108654|ENST00000225792|DDX5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.8214111328125 2 519.820953 1037.62735 0.37946 0.00019725 0.36935 0.00019199 0.74881 0.00038925 519.8211872813782 98.75 0.37736 92.574 92.338 92.716 -6.1757 94 28 5 0 0 0 0.047696 1 65537 65537 45.75 9.7058 1 3448499999.9999995 78433 2594;1767 52539 53649 91120 91120 0.11004398242016578 YLLPDAPVV 9 Unmodified _YLLPDAPVV_ 0 0 0 REV__MBD6|p.L304Pfs*69|1|0.22|ENSG00000166987|chr12:57525871-57525883|GGGGCCCCTGGGA/-|frameshift_variant REV__MBD6|p.L304Pfs*69|1|0.22|ENSG00000166987|chr12:57525871-57525883|GGGGCCCCTGGGA/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7820434570312 2 493.781493 985.548434 0.14651 7.2345E-05 -0.87495 -0.00043204 -0.72844 -0.00035969 493.78170196331587 93.226 0.92346 87.05 86.712 87.636 -6.1757 137 62 3 0 0 0 0.10925 2 62046 61782;62046 32.117 1.8922 1 92766000 + 78434 29459 52540 53650 91121;91122 91122 0.05508126217091558 YLLPDKSRNN 10 Unmodified _YLLPDKSRNN_ 0 0 0 ENSG00000147041|ENST00000297875|SYTL5;nc|ENSG00000147041|Q8TDW5-2|SYTL5 ENSG00000147041|ENST00000297875|SYTL5 ENSG00000147041|ENST00000297875|SYTL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5507202148438 3 407.219172 1218.63569 -0.40411 -0.00016456 0.45179 0.00018398 0.047678 1.9415E-05 407.2195141760834 36.12 0.40772 36.145 35.864 36.272 0.024971 44 18 4 0 0 0 0.68209 1 19075 19075 2.6312 0 1 11288000 78435 5813 52541 53651 91123 91123 0.03511300420746011 YLLPHILVYVL 11 Unmodified _YLLPHILVYVL_ 0 0 0 nc|ENSG00000175054|Q13535-2|ATR;ENSG00000175054|ENST00000350721|ATR;nc|ENSG00000175054|Q13535-3|ATR nc|ENSG00000175054|Q13535-2|ATR nc|ENSG00000175054|Q13535-2|ATR MULTI-MSMS AL20221201_MKP_PDAC_01 4 672.372314453125 2 671.910299 1341.80605 0.57936 0.00038928 0.23107 0.00015526 0.81043 0.00054454 671.9102943539394 100.69 0.11158 94.519 94.459 94.57 -6.1757 18 7 3 0 0 0 0.71259 1 67351 67351 3.5965 0.8613 1 56949000 78436 8479 52542 53652 91124 91124 0.148814430902803 YLLPKDIKL 9 Unmodified _YLLPKDIKL_ 0 0 0 ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.2334594726562 3 368.23387 1101.67978 -0.35962 -0.00013243 0.35142 0.0001294 -0.0082079 -3.0224E-06 368.5683318186518 61.189 0.21999 60.7 60.598 60.818 -0.48932 27 10 4 0 0 0 0.15882 1 33299 33299 27.223 8.8501 1 5800700 78437 3620 52543 53653 91125 91125 0.13300936584982992 YLLPKDIKL 9 Unmodified _YLLPKDIKL_ 0 0 0 ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.23388671875 3 368.23387 1101.67978 0.26247 9.665E-05 0.34084 0.00012551 0.60331 0.00022216 368.2339463037767 60.782 0.35317 60.738 60.594 60.947 -0.04351 61 17 5 0 0 0 0.18255 1 33114 33114 24.882 7.4389 1 102970000 78438 3620 52543 53653 91126 91126 0.13300936584982992 YLLPKDIKL 9 Unmodified _YLLPKDIKL_ 0 0 0 ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.8470458984375 2 551.847167 1101.67978 0.35117 0.00019379 0.17345 9.5716E-05 0.52461 0.00028951 551.8471668088421 60.801 0.33411 60.757 60.613 60.947 -0.04351 45 16 4 0 0 0 0.013396 2 33126 33126;33226 67.838 31.711 1 32606000 78439 3620 52543 53653 91127;91128 91127 0.13300936584982992 YLLPKDIKL 9 Unmodified _YLLPKDIKL_ 0 0 0 ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.2343444824219 3 368.23387 1101.67978 1.5071 0.00055497 0.054215 1.9964E-05 1.5613 0.00057494 368.2338273637706 84.028 0.83871 77.853 77.385 78.224 -6.1757 128 45 4 0 0 0 0.082934 3 55222 55100;55222;55350 37.075 19.632 1 153810000 78440 3620 52543 53653 91129;91130;91131 91130 0.13300936584982992 YLLPKDIKL 9 Unmodified _YLLPKDIKL_ 0 0 0 ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A ENSG00000122035|ENST00000241463|RASL11A MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.8477783203125 2 551.847167 1101.67978 0.8831 0.00048734 -0.16188 -8.933E-05 0.72122 0.000398 551.847033768035 84.019 0.69749 77.844 77.442 78.139 -6.1757 95 37 3 0 0 0 0.013396 1 55250 55250 67.838 31.711 1 50647000 78441 3620 52543 53653 91132 91132 0.13300936584982992 YLLPKDYHNKS 11 Unmodified _YLLPKDYHNKS_ 0 0 0 ENSG00000165097|ENST00000650836|KDM1B;nc|ENSG00000165097|Q8NB78-2|KDM1B ENSG00000165097|ENST00000650836|KDM1B ENSG00000165097|ENST00000650836|KDM1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 689.3611450195312 2 689.361702 1376.70885 NaN NaN NaN NaN NaN NaN NaN 38.304 1 38.321 37.821 38.821 0.01704 0 0 0 0.79635 1 20363 20363 12.241 5.1389 1 78442 7290 52544 53654 91133 91133 0.0355642914330474 YLLPKGTDVF 10 Unmodified _YLLPKGTDVF_ 0 0 0 nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P nc|ENSG00000290611|Q6ZSU1|CYP2G1P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8212890625 2 576.818607 1151.62266 NaN NaN NaN NaN NaN NaN NaN 68.555 1 68.58 68.08 69.08 0.025146 0 0 0 0.44191 1 37662 37662 29.082 3.6823 1 78443 16634 52545 53655 91134 91134 0.05291469308622254 YLLPNVFSNF 10 Unmodified _YLLPNVFSNF_ 0 0 0 REV__nc|ENSG00000134489|Q9H3N8-2|HRH4 REV__nc|ENSG00000134489|Q9H3N8-2|HRH4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 607.3186645507812 2 607.316232 1212.61791 1.8957 0.0011513 0.65434 0.00039739 2.55 0.0015487 607.3169685080511 93.451 0.26663 93.474 93.354 93.62 0.022987 20 10 2 0 0 0 0.33553 1 51947 51947 25.399 0 1 4221800 + 78444 19988 52546 53656 91135 91135 0.020105851658399843 YLLPPVPF 8 Unmodified _YLLPPVPF_ 0 0 0 REV__nc|ENSG00000124214|O95793-2|STAU1 REV__nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2777709960938 2 473.275847 944.537141 0.072038 3.4094E-05 0.51699 0.00024468 0.58903 0.00027877 473.2761008853458 84.93 0.35741 78.754 78.618 78.975 -6.1757 30 20 2 0 0 0 0.61999 1 55920 55920 24.21 0 1 9971200 + 78445 19430 52547 53657 91136 91136 0.06265348913620983 YLLPSVVLL 9 Unmodified _YLLPSVVLL_ 0 0 0 ENSG00000155189|ENST00000285518|AGPAT5;ENST00000518327.1_1_8:6566222-6612655:+|nuORF ENSG00000155189|ENST00000285518|AGPAT5 ENSG00000155189|ENST00000285518|AGPAT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.8230895996094 2 508.823161 1015.63177 0.565 0.00028749 -0.70963 -0.00036108 -0.14463 -7.3591E-05 508.82251432395253 101.71 0.11919 95.533 95.443 95.562 -6.1757 8 5 2 0 0 0 0.027803 1 68286 68286 56.541 5.6862 1 27997000 78446 6373 52548 53658 91137 91137 0.12457862664939512 YLLPYENLL 9 Unmodified _YLLPYENLL_ 0 0 0 ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160 ENSG00000030066|ENST00000378460|NUP160 ENSG00000030066|ENST00000378460|NUP160 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3146362304688 2 569.313158 1136.61176 0.77677 0.00044222 0.7869 0.000448 1.5637 0.00089022 569.3138728059902 100.54 0.20219 94.363 94.27 94.472 -6.1757 21 12 2 0 0 0 0.032796 1 67304 67304 70.716 22.967 1 67660000 78447 583 52549 53659 91138 91138 0.04892066934326067 YLLQEPPRTV 10 Unmodified _YLLQEPPRTV_ 0 0 0 ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.3400268554688 2 608.340238 1214.66592 1.007 0.00061258 0.52453 0.00031909 1.5315 0.00093167 608.3407304015963 53.925 0.33477 48.059 47.912 48.247 -5.8653 27 19 2 0 0 0 0.13206 1 34126 34126 47.732 22.333 1 11413000 78448 8682 52550 53660 91139 91139 0.06717659085893501 YLLQEPPRTV 10 Unmodified _YLLQEPPRTV_ 0 0 0 ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR ENSG00000177425|ENST00000328827|PAWR MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 608.340238 1214.66592 0.54348 0.00033062 -1.0172 -0.00061878 -0.47368 -0.00028816 608.339320721079 48.112 0.21545 47.759 47.652 47.868 -0.3526 -0.15004 -0.00093829 NaN 47.732 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1555000 78449 8682 52550 53660 0.06717659085893501 YLLQSVNQL 9 Unmodified _YLLQSVNQL_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.2979736328125 2 539.300581 1076.58661 0.27466 0.00014813 -1.072 -0.00057814 -0.79736 -0.00043002 539.2997925182101 68.522 0.25995 68.042 67.901 68.161 -0.48071 22 11 3 0 0 0 0.087258 1 37456 37456 36.044 17.909 1 3506900 78450 1980 52551 53661 91140 91140 0.05138012131760661 YLLQVATLL 9 Unmodified _YLLQVATLL_ 0 0 0 REV__ENSG00000142207|ENST00000382751|URB1 REV__ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.3184814453125 2 517.318243 1032.62193 0.55528 0.00028725 0.1649 8.5304E-05 0.72017 0.00037256 517.3182705018899 58.899 0.45784 58.838 58.607 59.065 -0.060719 73 22 4 0 0 0 0.14602 1 32009 32009 28.487 0 1 28482000 + 78451 20564 52552 53662 91141 91141 0.10692674659571821 YLLQVGSEKQ 10 Unmodified _YLLQVGSEKQ_ 0 0 0 nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN nc|ENSG00000020129|Q9UBB6-2|NCDN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2868041992188 2 582.816596 1163.61864 0.27161 0.0001583 -1.4239 -0.00082989 -1.1523 -0.00067159 582.8159875024832 39.289 0.29248 39.289 39.177 39.469 0 25 13 2 0 0 0 0.21977 1 21031 21031 22.736 2.3217 1 1420100 78452 520 52553 53663 91142 91142 0.04337379814887754 YLLRVKPV 8 Unmodified _YLLRVKPV_ 0 0 0 REV__ENSG00000009335|ENST00000348165|UBE3C REV__ENSG00000009335|ENST00000348165|UBE3C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.7668151855469 2 494.32112 986.627687 0.62961 0.00031123 -0.64652 -0.00031959 -0.016908 -8.3579E-06 494.3205753767063 50.904 0.1947 50.85 50.747 50.942 -0.053871 15 9 2 0 0 0 8.7369 1 27580 27580 26.341 16.158 1 1376400 + 78453 17032 52554 53664 91143 91143 0.13383817961891964 YLLSARNTSL 10 Unmodified _YLLSARNTSL_ 0 0 0 nc|ENSG00000125826|Q9BYM8-3|RBCK1;ENSG00000125826|ENST00000356286|RBCK1;nc|ENSG00000125826|Q9BYM8-4|RBCK1;ENST00000382181.2_2_20:389382-402830:+|nuORF nc|ENSG00000125826|Q9BYM8-3|RBCK1 nc|ENSG00000125826|Q9BYM8-3|RBCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3197631835938 2 569.316763 1136.61897 3.7371 0.0021276 1.6274 0.0009265 5.3645 0.0030541 569.31801827808 98.232 0.20981 98.213 98.099 98.309 -0.018188 16 7 3 0 0 0 0.60623 1 54572 54572 10.824 0 1 1248400 78454 3890 52555 53665 91144 91144 0.056127995347424076 YLLSGAGEHL 10 Unmodified _YLLSGAGEHL_ 0 0 0 ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000100345|P35579-2|MYH9 ENSG00000100345|ENST00000216181|MYH9 ENSG00000100345|ENST00000216181|MYH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2530517578125 2 530.277106 1058.53966 0.77818 0.00041265 -0.094433 -5.0076E-05 0.68375 0.00036257 530.2770218185614 49.704 0.50756 49.704 49.352 49.859 0 71 22 4 0 0 0 0.31022 1 27190 27190 26.884 3.7352 1 169550000 78455 1800 52556 53666 91145 91145 0.012731525806202626 YLLSKDIK 8 Unmodified _YLLSKDIK_ 0 0 0 ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM ENSG00000182253|ENST00000336292|SYNM ENSG00000182253|ENST00000336292|SYNM MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.296630859375 2 490.294768 978.574983 0.022167 1.0868E-05 0.9253 0.00045367 0.94746 0.00046454 490.2954062326449 41.408 0.28445 36.8 36.639 36.923 -4.6079 29 18 2 0 0 0 0.17811 1 24911 24911 78.728 4.5284 1 19565000 78456 9036 52557 53667 91146 91146 0.08483815108422732 YLLSLDKQ 8 Unmodified _YLLSLDKQ_ 0 0 0 ENST00000393077.2_1_10:114575138-114575192:+|nuORF ENST00000393077.2_1_10:114575138-114575192:+|nuORF ENST00000393077.2_1_10:114575138-114575192:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7764892578125 2 490.276575 978.538597 0.52519 0.00025749 -0.35071 -0.00017194 0.17449 8.5547E-05 490.27723265691117 39.081 0.38269 39.092 38.92 39.303 0.011456 39 17 3 0 0 0 0.79982 1 20862 20862 6.7232 0 1 5598100 78457 12689 52558 53668 91147 91147 0.048469382116991255 YLLSSPPP 8 Unmodified _YLLSSPPP_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 437.2398376464844 2 437.239461 872.46437 0.23488 0.0001027 -0.16194 -7.0805E-05 0.072943 3.1894E-05 437.2392312111044 85.08 0.48757 85.08 84.807 85.295 0 59 25 3 0 0 0 0.5953 3 47146 47048;47146;47255 26.341 10.573 1 2513700 + 78458 24637 52559 53669 91148;91149;91150 91149 0.023035951201904936 YLLSSPPP 8 Unmodified _YLLSSPPP_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.4708251953125 1 873.471646 872.46437 -0.10766 -9.4038E-05 -0.82288 -0.00071877 -0.93054 -0.0008128 873.4708953408971 85.51 0.60719 85.009 84.715 85.322 -0.5015 136 48 3 0 0 0 0.44122 1 46869 46869 40.449 40.449 1 24204000 + 78459 24637 52559 53669 91151 91151 0.023035951201904936 YLLSSPPP 8 Unmodified _YLLSSPPP_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 437.2395324707031 2 437.239461 872.46437 0.27935 0.00012214 0.10672 4.666E-05 0.38606 0.0001688 437.2393843424304 93.279 0.92346 87.104 86.712 87.636 -6.1757 163 62 3 0 0 0 0.5953 5 61641 61510;61641;61771;61904;62044 26.341 20.871 1 137170000 + 78460 24637 52559 53669 91152;91153;91154;91155;91156 91153 0.023035951201904936 YLLSSPPP 8 Unmodified _YLLSSPPP_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 873.4716796875 1 873.471646 872.46437 0.13971 0.00012203 0.30804 0.00026907 0.44775 0.0003911 873.4718151955251 93.224 0.97106 87.048 86.712 87.684 -6.1757 166 65 3 0 0 0 0.44122 3 61616 61616;61867;62147 40.449 40.449 1 188200000 + 78461 24637 52559 53669 91157;91158;91159 91157 0.023035951201904936 YLLSSPPP 8 Unmodified _YLLSSPPP_ 0 0 0 REV__ENSG00000273749|ENST00000617928|CYFIP1 REV__ENSG00000273749|ENST00000617928|CYFIP1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 437.239461 872.46437 0.23488 0.0001027 -0.16194 -7.0805E-05 0.072943 3.1894E-05 437.2392312111044 85.08 0.48757 85.08 84.807 85.295 0 0 0 NaN 26.341 59 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2513700 + 78462 24637 52559 53669 0.023035951201904936 YLLTRDDHG 9 Unmodified _YLLTRDDHG_ 0 0 0 nc|ENSG00000118946|O14917-2|PCDH17;ENSG00000118946|ENST00000377918|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 nc|ENSG00000118946|O14917-2|PCDH17 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2921752929688 2 545.269813 1088.52507 0.077778 4.241E-05 -0.24352 -0.00013278 -0.16574 -9.0371E-05 545.2698857148046 55.144 0.22601 54.666 54.548 54.774 -0.47798 14 10 2 0 0 0 0.18882 1 29910 29910 15.847 3.3156 1 935050 78463 3402 52560 53670 91160 91160 -0.015649195675450756 YLLTRNPHL 9 Unmodified _YLLTRNPHL_ 0 0 0 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2174987792969 3 376.217102 1125.62948 0.17505 6.5855E-05 0.62289 0.00023434 0.79793 0.0003002 376.21732761961516 38.82 0.20307 38.831 38.738 38.941 0.011456 22 9 4 0 0 0 0.062454 1 20671 20671 41.956 16.965 1 5284600 78464 916 52561 53671 91161 91161 0.0716882697984147 YLLTRNPHL 9 Unmodified _YLLTRNPHL_ 0 0 0 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2183532714844 3 376.217102 1125.62948 1.1564 0.00043504 0.65508 0.00024645 1.8114 0.00068149 376.2173780582903 43.724 0.3011 38.96 38.808 39.109 -4.7648 29 18 2 0 0 0 0.19361 1 26651 26651 23.79 5.4167 1 10025000 78465 916 52561 53671 91162 91162 0.0716882697984147 YLLVFPLAVF 10 Unmodified _YLLVFPLAVF_ 0 0 0 ENST00000567385.5_1_16:48244807-48265838:-|nuORF;nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11 ENST00000567385.5_1_16:48244807-48265838:-|nuORF ENST00000567385.5_1_16:48244807-48265838:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 591.3509521484375 2 591.352086 1180.68962 0.21262 0.00012573 -2.28 -0.0013483 -2.0674 -0.0012226 591.3506003883662 61.415 0.22508 61.383 61.231 61.456 -0.032787 19 10 3 0 0 0 0.22102 1 33522 33522 32.117 7.4431 1 4469500 78466 3573 52562 53672 91163 91163 0.10650124590347332 YLLVPPLM 8 Unmodified _YLLVPPLM_ 0 0 0 ENSG00000278870|ENST00000623849|OR51G1 ENSG00000278870|ENST00000623849|OR51G1 ENSG00000278870|ENST00000623849|OR51G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 473.2798767089844 2 473.277532 944.540511 1.4427 0.00068281 3.2672 0.0015463 4.7099 0.0022291 473.2793254311729 58.849 0.30255 52.774 52.565 52.868 -6.0745 22 16 2 0 0 0 0.5245 1 37688 37688 32.454 7.7798 1 11119000 78467 10939 52563 53673 91164 91164 0.06602275695968274 YLLVRRVLH 9 Unmodified _YLLVRRVLH_ 0 0 0 nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 nc|ENSG00000204267|Q03519-2|TAP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.248291015625 3 390.248625 1167.72405 NaN NaN NaN NaN NaN NaN NaN 18.218 1 18.232 17.732 18.732 0.013865 0 0 0 0.86004 1 9118 9118 0.26902 0.033176 1 78468 10258 52564 53674 91165 91165 0.1468938552184227 YLMDINGKMWL 11 Unmodified _YLMDINGKMWL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.3458862304688 2 692.343609 1382.67266 1.0831 0.00074985 0.029097 2.0145E-05 1.1122 0.00076999 692.344497814615 98.312 0.10391 92.136 92.087 92.19 -6.1757 15 6 3 0 0 0 0.0079227 1 65207 65207 70.332 43.448 1 22143000 78469 8367 52565 53675 91166 91166 -0.0033648734938651614 YLMDLINFL 9 Unmodified _YLMDLINFL_ 0 0 0 nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENSG00000138190|ENST00000260762|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 nc|ENSG00000138190|Q8TAG9-2|EXOC6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 571.3023071289062 2 571.301736 1140.58892 1.1429 0.00065293 2.025 0.0011569 3.1679 0.0018098 571.3029201156291 102.38 0.070099 96.205 96.169 96.239 -6.1757 6 5 2 0 0 0 0.18118 1 68718 68718 18.135 0 1 4291700 78470 5032 52566 53676 91167 91167 0.024247245452215793 YLMGKFPFF 9 Unmodified _YLMGKFPFF_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.2968139648438 2 575.293714 1148.57287 2.0347 0.0011705 0.84092 0.00048378 2.8756 0.0016543 575.294262470144 93.875 0.31973 93.898 93.746 94.066 0.02298 24 12 3 0 0 0 0.18465 1 52197 52197 24.674 14.49 1 1685400 78471 7189 52567 53677 91168 91168 0.004530630989620477 YLMGKFPFF 9 Unmodified _YLMGKFPFF_ 0 0 0 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MSMS AL20221201_MKP_PDAC_01 4 575.2944946289062 2 575.293714 1148.57287 NaN NaN NaN NaN NaN NaN NaN 99.945 1 93.77 93.27 94.27 -6.1757 0 0 0 0.050352 1 66719 66719 57.471 25.354 1 78472 7189 52567 53677 91169 91169 0.004530630989620477 YLMGKFPFF 9 Oxidation (M) _YLM(Oxidation (M))GKFPFF_ YLM(1)GKFPFF YLM(67)GKFPFF 0 0 1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 ENSG00000164379|ENST00000296839|FOXQ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.291748046875 2 583.291171 1164.56779 1.5304 0.00089268 -0.49336 -0.00028777 1.0371 0.00060491 583.2908688262683 98.29 0.19402 92.114 92.027 92.221 -6.1757 28 12 3 0 0 0 0.016184 1 65159 65159 67.344 51.497 1 74557000 78473 7189 52567 53678 91170 91170 1246 -0.007912407636695207 YLMLAFCHL 9 Unmodified _YLMLAFCHL_ 0 0 0 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 ENSG00000160505|ENST00000301295|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4 nc|ENSG00000160505|Q96MN2-3|NLRP4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.77880859375 2 555.777373 1109.54019 NaN NaN NaN NaN NaN NaN NaN 67.272 1 67.272 66.772 67.772 0 0 0 0 0.82015 1 37516 37516 5.2307 1.2863 1 78474 6732;16317 52568 53679 91171 91171 -0.010194672955549322 YLMMLMPPI 9 Unmodified _YLMMLMPPI_ 0 0 0 POLR3E|p.S253I|1|0.21|ENSG00000058600|chr16:22317024-22317024|G/T|missense_variant POLR3E|p.S253I|1|0.21|ENSG00000058600|chr16:22317024-22317024|G/T|missense_variant POLR3E|p.S253I|1|0.21|ENSG00000058600|chr16:22317024-22317024|G/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7824096679688 2 554.78381 1107.55307 NaN NaN NaN NaN NaN NaN NaN 69.049 1 69.049 68.549 69.549 0 0 0 0 0.70111 1 38476 38476 9.3474 4.1168 1 78475 16690 52569 53680 91172 91172 0.003592277723555526 YLMRLILC 8 Unmodified _YLMRLILC_ 0 0 0 REV__ENST00000599275.1_1_19:8326515-8326990:+|nuORF REV__ENST00000599275.1_1_19:8326515-8326990:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.262451171875 2 512.787741 1023.56093 0.37752 0.00019359 1.7767 0.00091109 2.1543 0.0011047 512.7889999537828 85.619 0.25399 85.118 85.068 85.322 -0.5015 24 13 2 0 0 0 8.7369 1 46872 46872 5.7604 2.8712 1 889790 + 78476 17867 52570 53681 91173 91173 0.0500912308414172 YLMSFFNYLL 10 Oxidation (M) _YLM(Oxidation (M))SFFNYLL_ YLM(1)SFFNYLL YLM(50)SFFNYLL 0 0 1 REV__ENST00000485303.5_1_3:110853140-110853284:+|nuORF REV__ENST00000485303.5_1_3:110853140-110853284:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 663.8262939453125 2 663.825575 1325.6366 0.60999 0.00040493 -0.48547 -0.00032227 0.12452 8.2661E-05 663.8258248111567 74.159 0.58038 67.984 67.747 68.328 -6.1757 59 29 3 0 0 0 0.085354 1 48398 48398 49.933 6.0747 1 22162000 + 78477 27776 52571 53682 91174 91174 1861 -0.013196212545835806 YLNDRVDEL 9 Unmodified _YLNDRVDEL_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496255-118496735:-|nuORF nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.78369140625 2 568.782753 1135.55095 0.73415 0.00041757 1.3528 0.00076947 2.087 0.001187 568.7840224039822 42.419 0.26444 42.419 42.279 42.544 0 32 12 4 0 0 0 0.029718 1 22945 22945 55.503 22.717 1 8503700 78478 3651 52572 53683 91175 91175 -0.011400701159118398 YLNDRVDEL 9 Unmodified _YLNDRVDEL_ 0 0 0 nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A;ENST00000441170.1_1_4:118496255-118496735:-|nuORF nc|ENSG00000122643|Q9H0P0-3|NT5C3A nc|ENSG00000122643|Q9H0P0-3|NT5C3A MSMS AL20221201_MKP_PDAC_01 4 568.7840576171875 2 568.782753 1135.55095 NaN NaN NaN NaN NaN NaN NaN 48.703 1 43.307 42.807 43.807 -5.3961 0 0 0 0.17798 1 30364 30364 33.445 0 1 78479 3651 52572 53683 91176 91176 -0.011400701159118398 YLNECAKATL 10 Unmodified _YLNECAKATL_ 0 0 0 REV__nc|ENSG00000142405|P59046-3|NLRP12 REV__nc|ENSG00000142405|P59046-3|NLRP12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.2821044921875 2 563.284074 1124.5536 0.31613 0.00017807 -2.9585 -0.0016665 -2.6423 -0.0014884 563.7853549401784 84.173 0.31776 84.173 84.001 84.319 0 20 15 2 0 0 0 0.69064 1 46652 46652 3.9444 0 1 584310 + 78480 20569 52573 53684 91177 91177 -0.003699379826002769 YLNECAKATL 10 Unmodified _YLNECAKATL_ 0 0 0 REV__nc|ENSG00000142405|P59046-3|NLRP12 REV__nc|ENSG00000142405|P59046-3|NLRP12 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 563.284074 1124.5536 0.31613 0.00017807 -2.9585 -0.0016665 -2.6423 -0.0014884 563.7853549401784 84.173 0.31776 84.173 84.001 84.319 0 0.012916 0.0010232 NaN 3.9444 20 15 2 NaN NaN NaN NaN 0 NaN NaN 0 584310 + 78481 20569 52573 53684 -0.003699379826002769 YLNECAKATL 10 Unmodified _YLNECAKATL_ 0 0 0 REV__nc|ENSG00000142405|P59046-3|NLRP12 REV__nc|ENSG00000142405|P59046-3|NLRP12 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 563.284074 1124.5536 0.68 0.00038303 -4.3482 -0.0024493 -3.6682 -0.0020663 563.281400063443 84.647 0.25484 84.147 83.998 84.253 -0.49961 -0.012916 -0.00054246 NaN 3.9444 17 11 2 NaN NaN NaN NaN 0 NaN NaN 0 722010 + 78482 20569 52573 53684 -0.003699379826002769 YLNECEFWDPC 11 Unmodified _YLNECEFWDPC_ 0 0 0 REV__nc|ENSG00000177663|Q96F46-2|IL17RA REV__nc|ENSG00000177663|Q96F46-2|IL17RA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.5182189941406 3 473.517901 1417.53187 -0.24558 -0.00011629 1.3096 0.0006201 1.064 0.00050381 473.51868658417646 56.692 0.22711 56.207 56.122 56.349 -0.48554 20 11 2 0 0 0 0.73114 1 30800 30800 1.3296 0.82369 1 2703600 + 78483 22996 52574 53685 91178 91178 -0.16019110793490654 YLNEKYKV 8 Unmodified _YLNEKYKV_ 0 0 0 REV__ENST00000372725.5_1_10:76602531-76602582:+|nuORF REV__ENST00000372725.5_1_10:76602531-76602582:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8621215820312 3 352.862325 1055.56515 NaN NaN NaN NaN NaN NaN NaN 24.588 1 24.588 24.088 25.088 0 0 0 0 0.97444 1 12571 12571 3.9444 2.2918 1 + 78484 26125 52575 53686 91179 91179 0.03958627103043 YLNELQKWQFL 11 Unmodified _YLNELQKWQFL_ 0 0 0 REV__ENST00000470070.6_1_3:69247847-69370051:-|nuORF REV__ENST00000470070.6_1_3:69247847-69370051:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 494.5979309082031 3 494.59776 1480.77145 NaN NaN NaN NaN NaN NaN NaN 86.969 1 80.793 80.293 81.293 -6.1757 0 0 0 0.76967 1 57333 57333 13.519 3.3681 1 + 78485 18920 52576 53687 91180 91180 0.05029575211528936 YLNFMGIMF 9 Unmodified _YLNFMGIMF_ 0 0 0 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7;REV__nc|ENSG00000137672|Q9Y210-2|TRPC6 REV__nc|ENSG00000069018|Q9HCX4-2|TRPC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2698974609375 2 568.269381 1134.52421 0.32638 0.00018547 1.9749 0.0011223 2.3013 0.0013078 568.2704756306164 78.156 0.32962 78.156 77.984 78.313 0 33 13 3 0 0 0 0.39863 1 43407 43407 12.532 0.89125 1 1329600 + 78486 17445;20257 52577 53688 91181 91181 -0.0376717353242384 YLNGLFLAF 9 Unmodified _YLNGLFLAF_ 0 0 0 REV__nc|ENSG00000149488|Q8TDI7-3|TMC2 REV__nc|ENSG00000149488|Q8TDI7-3|TMC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.5303955078125 3 353.195416 1056.56442 1.6495 0.0005826 3.6853 0.0013016 5.3348 0.0018842 353.19771953408616 35.636 0.65465 31.444 31.04 31.694 -4.1928 83 40 3 0 0 0 0.39863 1 20679 20679 8.1555 0 1 15630000 + 78487 20998 52578 53689 91182 91182 0.03839832453991221 YLNGVTHLKR 10 Unmodified _YLNGVTHLKR_ 0 0 0 REV__ENSG00000196639|ENST00000431010|HRH1 REV__ENSG00000196639|ENST00000431010|HRH1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.297607421875 2 600.846022 1199.67749 -0.37517 -0.00022542 -1.0225 -0.00061438 -1.3977 -0.0008398 600.8458789031204 51.345 0.25293 51.291 51.187 51.44 -0.053871 25 12 3 0 0 0 0.23325 1 27861 27861 10.074 0.6908 1 6864600 + 78488 23853 52579 53690 91183 91183 0.08563900899866894 YLNHWNHF 8 Unmodified _YLNHWNHF_ 0 0 0 ENSG00000141560|ENST00000269373|FN3KRP;ENSG00000167363|ENST00000300784|FN3K ENSG00000141560|ENST00000269373|FN3KRP;ENSG00000167363|ENST00000300784|FN3K ENSG00000167363|ENST00000300784|FN3K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.7633666992188 2 565.761958 1129.50936 NaN NaN NaN NaN NaN NaN NaN 45.817 1 45.789 45.289 46.289 -0.028011 0 0 0 0.11326 1 24631 24631 93.883 67.542 1 78489 7603;5351 52580 53691 91184 91184 -0.05021161293916521 YLNIKASTF 9 Unmodified _YLNIKASTF_ 0 0 0 nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122;ENST00000454887.1_1_3:12892173-12913270:+|nuORF;ENST00000448668.2_1_3:129200375-129202705:+|nuORF nc|ENSG00000163913|Q9HBG6-11|IFT122 nc|ENSG00000163913|Q9HBG6-11|IFT122 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7903442382812 2 528.78985 1055.56515 NaN NaN NaN NaN NaN NaN NaN 72.845 1 72.845 72.345 73.345 0 0 0 0 0.53226 1 40559 40559 14.838 0.93222 1 78490 7094 52581 53692 91185 91185 0.039586271030202624 YLNKWPIKLTL 11 Unmodified _YLNKWPIKLTL_ 0 0 0 REV__nc|ENSG00000129003|Q709C8-2|VPS13C REV__nc|ENSG00000129003|Q709C8-2|VPS13C MSMS AL20221201_MKP_PDAC_01 4 463.6173095703125 3 463.614862 1387.82276 NaN NaN NaN NaN NaN NaN NaN 104.97 1 98.792 98.292 99.292 -6.1757 0 0 0 0.94209 1 70272 70272 1.0136 0.4504 1 + 78491 19645 52582 53693 91186 91186 0.14435943976218368 YLNLFYRF 8 Unmodified _YLNLFYRF_ 0 0 0 REV__ENST00000377200.9_1_9:72329734-72329920:-|nuORF REV__ENST00000377200.9_1_9:72329734-72329920:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.3014526367188 2 568.300384 1134.58622 0.34936 0.00019854 2.4789 0.0014088 2.8283 0.0016073 568.3032155771866 61.533 0.43156 61.533 61.297 61.728 0 91 19 6 0 0 0 0.75262 1 34259 34259 12.532 0.89125 1 87159000 + 78492 26242 52583 53694 91187 91187 0.02430637202564867 YLNLMNQFFSD 11 Unmodified _YLNLMNQFFSD_ 0 0 0 REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.5487365722656 3 464.548189 1390.62274 0.094473 4.3887E-05 1.2899 0.00059922 1.3844 0.00064311 464.5489023935175 16.109 0.10962 16.114 16.078 16.188 0.0050564 15 10 2 0 0 0 0.73389 1 8071 8071 0.36667 0.037403 1 303260 + 78493 20757 52584 53695 91188 91188 -0.05694898753722555 YLNLMNQFFSD 11 Unmodified _YLNLMNQFFSD_ 0 0 0 REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF REV__ENST00000490579.1_1_3:183995094-184008674:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 464.548189 1390.62274 0.094473 4.3887E-05 1.2899 0.00059922 1.3844 0.00064311 464.5489023935175 16.109 0.10962 16.114 16.078 16.188 0.0050564 0 0 NaN 0.36667 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 303260 + 78494 20757 52584 53695 -0.05694898753722555 YLNMSLLEF 9 Unmodified _YLNMSLLEF_ 0 0 0 REV__nc|ENSG00000127334|Q92630-2|DYRK2 REV__nc|ENSG00000127334|Q92630-2|DYRK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2833862304688 2 565.283543 1128.55253 0.5513 0.00031164 0.36155 0.00020438 0.91285 0.00051602 565.2836200388576 95.485 0.33545 95.116 94.922 95.257 -0.36815 30 15 3 0 0 0 0.53666 2 52108 52108;52205 5.2307 0 1 1092100 + 78495 19577 52585 53696 91189;91190 91189 -0.006601523514973451 YLNPSFSRL 9 Unmodified _YLNPSFSRL_ 0 0 0 REV__ENST00000370202.4_1_1:95712182-95712418:+|nuORF REV__ENST00000370202.4_1_1:95712182-95712418:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.1979675292969 3 366.197708 1095.57129 -0.19861 -7.2732E-05 0.29392 0.00010763 0.095302 3.49E-05 366.197926958179 30.833 0.23359 30.864 30.737 30.97 0.030104 19 9 3 0 0 0 0.51218 1 16120 16120 4.1895 1.4543 1 2361200 + 78496 26053 52586 53697 91191 91191 0.027331453345595946 YLNQHQTAAM 10 Unmodified _YLNQHQTAAM_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MSMS AL20221201_MKP_PDAC_01 4 392.8836975097656 3 392.853724 1175.53934 1.4067 0.00055264 0.4479 0.00017596 1.8546 0.0007286 392.8537867999164 20.63 0.32237 17.937 17.801 18.124 -2.693 29 20 2 0 0 0 0.69064 1 11016 11016 1.9064 0 1 2976200 78497 10598 52587 53698 91192 91192 -0.041405904109069525 YLNQLEQL 8 Unmodified _YLNQLEQL_ 0 0 0 REV__nc|ENSG00000044459|Q9NXG0-3|CNTLN REV__nc|ENSG00000044459|Q9NXG0-3|CNTLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.2714233398438 2 510.771657 1019.52876 0.31785 0.00016235 -0.71377 -0.00036457 -0.39592 -0.00020222 510.77152845096475 84.138 0.47162 83.638 83.392 83.864 -0.49961 61 20 4 0 0 0 0.71616 1 45965 45965 15.768 0 1 6435700 + 78498 17216 52588 53699 91193 91193 0.01977750206322071 YLNQLLEF 8 Unmodified _YLNQLLEF_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.2774047851562 2 520.276575 1038.5386 0.37602 0.00019564 0.31834 0.00016563 0.69437 0.00036126 520.2767443603093 83.613 0.44045 83.613 83.399 83.84 0 73 23 4 0 0 0 0.5953 1 46312 46312 26.341 3.1929 1 7195600 78499 5127 52589 53700 91194 91194 0.020869382117098212 YLNQLLEF 8 Unmodified _YLNQLLEF_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.277099609375 2 520.276575 1038.5386 0.42557 0.00022141 -0.38347 -0.00019951 0.042098 2.1902E-05 520.2762814179501 84.081 0.55258 83.581 83.288 83.841 -0.49961 99 23 5 0 0 0 0.50586 1 46116 46116 34.187 9.5134 1 88885000 78500 5127 52589 53700 91195 91195 0.020869382117098212 YLNQPCSLML 10 Unmodified _YLNQPCSLML_ 0 0 0 REV__ENSG00000176136|ENST00000589410|MC5R REV__ENSG00000176136|ENST00000589410|MC5R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.2887573242188 2 591.288302 1180.56205 0.70541 0.0004171 -1.0235 -0.0006052 -0.31812 -0.0001881 591.2883100887635 73.44 0.60291 72.964 72.541 73.144 -0.47588 70 26 5 0 0 0 0.1028 1 40151 40151 46.021 13.715 1 8019300 + 78501 22912 52590 53701 91196 91196 -0.021007073376267726 YLNQQATDLC 10 Unmodified _YLNQQATDLC_ 0 0 0 REV__ENSG00000197013|ENST00000358491|ZNF429;REV__nc|ENSG00000160321|O43345-2|ZNF208 REV__ENSG00000197013|ENST00000358491|ZNF429 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.7940673828125 2 584.768788 1167.52302 0.74344 0.00043474 0.16986 9.9328E-05 0.9133 0.00053407 584.7689397359901 63.217 0.29012 63.195 63.089 63.379 -0.021614 22 14 2 0 0 0 0.22941 1 34551 34551 5.7319 3.2334 1 1346700 + 78502 23887;21537 52591 53702 91197 91197 -0.05403716367641209 YLNSFQLLFF 10 Unmodified _YLNSFQLLFF_ 0 0 0 REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF REV__ENST00000415807.6_1_3:172115292-172115697:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 430.8885803222656 3 431.228897 1290.66486 0.59389 0.0002561 -2.3078 -0.00099518 -1.7139 -0.00073907 431.22810235083887 52.139 0.2905 52.08 51.939 52.229 -0.058918 33 13 3 0 0 0 0.23946 1 28205 28205 3.5871 0.59182 1 3953000 + 78503 26760 52592 53703 91198 91198 0.03115444716991078 YLNSIQLMQLY 11 Unmodified _YLNSIQLMQLY_ 0 0 0 REV__ENSG00000182771|ENST00000327946|GRID1 REV__ENSG00000182771|ENST00000327946|GRID1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 693.3615112304688 2 693.360313 1384.70607 0.50266 0.00034852 0.85419 0.00059226 1.3569 0.00094079 693.3608988311329 83.324 0.20467 83.387 83.207 83.412 0.063171 13 7 2 0 0 0 0.21511 1 46096 46096 31.268 5.0002 1 4895400 + 78504 23294 52593 53704 91199 91199 0.029108376941621827 YLNSLLQTL 9 Unmodified _YLNSLLQTL_ 0 0 0 nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40;USP40|p.D604Vfs*3|1|0.08|ENSG00000085982|chr2:233524559-233524559|T/-|frameshift_variant;ENST00000484528.1_1_2:234465455-234475343:-|nuORF;ENST00000427947.7_1_2:234462980-234475343:-|nuORF;nc|ENSG00000170242|Q96K76-2|USP47;ENSG00000170242|ENST00000527733|USP47;nc|ENSG00000170242|Q96K76|USP47 nc|ENSG00000085982|Q9NVE5|USP40;nc|ENSG00000170242|Q96K76-2|USP47 nc|ENSG00000085982|Q9NVE5|USP40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.8026733398438 2 532.802957 1063.59136 0.93762 0.00049957 -4.1011 -0.0021851 -3.1635 -0.0016855 532.80107924677 79.589 0.34119 79.1 78.916 79.257 -0.48932 21 14 2 0 0 0 0.28047 1 43581 43581 18.135 0 1 1393400 78505 1425;7962 52594 53705 91200 91200 0.062108962745242025 YLNVCGETEI 10 Unmodified _YLNVCGETEI_ 0 0 0 ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R ENSG00000197081|ENST00000356956|IGF2R MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2720336914062 2 570.765714 1139.51688 0.3544 0.00020228 1.0628 0.00060662 1.4172 0.0008089 570.7660833623142 65.791 0.39001 65.791 65.624 66.014 0 36 19 2 0 0 0 0.69064 1 36620 36620 3.9444 0 1 3644900 78506 9906 52595 53706 91201 91201 -0.047302345991511174 YLNVWIPAP 9 Unmodified _YLNVWIPAP_ 0 0 0 ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE ENSG00000114200|ENST00000264381|BCHE MSMS AL20221201_MKP_PDAC_01 4 536.7948608398438 2 536.794935 1071.57532 NaN NaN NaN NaN NaN NaN NaN 45.599 1 40.644 40.144 41.144 -4.9549 0 0 0 0.33856 1 28021 28021 23.148 2.7339 1 78507 3023 52596 53707 91202 91202 0.04239234828264671 YLNWNDSL 8 Unmodified _YLNWNDSL_ 0 0 0 ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A ENSG00000173612|ENST00000310357|GPRC6A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2364501953125 2 512.740357 1023.46616 -0.34985 -0.00017938 -0.060669 -3.1107E-05 -0.41052 -0.00021049 512.7402361666522 41.155 0.51972 41.155 40.961 41.48 0 32 15 3 0 0 0 0.80143 1 22224 22224 5.7604 1.0044 1 9349600 78508 8348 52597 53708 91203 91203 -0.04463395861853314 YLNWQEMHQK 10 Unmodified _YLNWQEMHQK_ 0 0 0 ENST00000527366.1_1_4:100870060-100870494:-|nuORF ENST00000527366.1_1_4:100870060-100870494:-|nuORF ENST00000527366.1_1_4:100870060-100870494:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 459.8868103027344 3 459.552045 1375.63431 0.72085 0.00033127 -0.59538 -0.00027361 0.12546 5.7657E-05 459.5521085536266 68.455 0.34448 68.48 68.318 68.662 0.025154 53 16 4 0 0 0 0.67413 1 37684 37684 5.7834 1.3773 1 8427700 78509 14834 52598 53709 91204 91204 -0.03848656939726425 YLNWTFNIL 9 Unmodified _YLNWTFNIL_ 0 0 0 ENST00000541377.5_1_2:122363504-122363705:-|nuORF ENST00000541377.5_1_2:122363504-122363705:-|nuORF ENST00000541377.5_1_2:122363504-122363705:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 592.7465209960938 2 592.310949 1182.60735 1.0755 0.00063701 0.96923 0.00057409 2.0447 0.0012111 592.3114555052073 81.238 0.36588 81.298 81.114 81.48 0.059937 32 13 3 0 0 0 0.18521 1 44945 44945 16.942 3.0362 1 4171900 78510 15045 52599 53710 91205 91205 0.023346025114278746 YLPCPEIF 8 Unmodified _YLPCPEIF_ 0 0 0 ENSG00000148288|ENST00000372040|GBGT1;nc|ENSG00000148288|Q8N5D6-2|GBGT1 ENSG00000148288|ENST00000372040|GBGT1 ENSG00000148288|ENST00000372040|GBGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 492.2447204589844 2 491.241147 980.46774 0.2497 0.00012266 -0.39738 -0.00019521 -0.14767 -7.2543E-05 491.2402501095977 50.511 0.41553 50.511 50.308 50.724 0 55 19 4 0 0 0 0.72953 1 27912 27912 14.582 2.9414 1 7428000 78511 5910 52600 53711 91206 91206 -0.023274780974588793 YLPDCRCHGL 10 Unmodified _YLPDCRCHGL_ 0 0 0 REV__ENST00000461645.1_1_10:103550734-103550779:-|nuORF REV__ENST00000461645.1_1_10:103550734-103550779:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.8483276367188 3 392.847804 1175.52158 -0.18923 -7.434E-05 2.2964 0.00090212 2.1071 0.00082778 392.84886783955847 32.575 0.13745 32.446 32.392 32.53 -0.12915 9 5 2 0 0 0 0.69064 1 16991 16991 1.9064 0.71303 1 1610700 + 78512 27322 52601 53712 91207 91207 -0.059156289373959225 YLPDEQATIQY 11 Unmodified _YLPDEQATIQY_ 0 0 0 nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 MSMS AL20221201_MKP_PDAC_01 4 447.8843994140625 3 447.550475 1339.6296 NaN NaN NaN NaN NaN NaN NaN 98.529 1 92.353 91.853 92.853 -6.1757 0 0 0 0.88164 1 65363 65363 4.1166 0.2403 1 78513 7506 52602 53713 91208 91208 -0.026632626014588823 YLPDLSKRA 9 Unmodified _YLPDLSKRA_ 0 0 0 REV__ENSG00000101098|ENST00000372851|RIMS4 REV__ENSG00000101098|ENST00000372851|RIMS4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 354.8700256347656 3 354.869591 1061.58694 1.791 0.00063558 -0.48968 -0.00017377 1.3013 0.00046181 354.8693983731947 35.752 0.4398 31.56 31.301 31.741 -4.1928 58 27 3 0 0 0 0.36964 1 20726 20726 9.544 1.0997 1 31094000 + 78514 18128 52603 53714 91209 91209 0.05861431851622001 YLPDLSKRA 9 Unmodified _YLPDLSKRA_ 0 0 0 REV__ENSG00000101098|ENST00000372851|RIMS4 REV__ENSG00000101098|ENST00000372851|RIMS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 354.869591 1061.58694 -0.10299 -3.6549E-05 -0.15052 -5.3414E-05 -0.25351 -8.9963E-05 354.8695258533332 31.606 0.2165 31.606 31.523 31.739 0 0.067913 -7.273E-05 NaN 9.544 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1752200 + 78515 18128 52603 53714 0.05861431851622001 YLPDLSKRA 9 Unmodified _YLPDLSKRA_ 0 0 0 REV__ENSG00000101098|ENST00000372851|RIMS4 REV__ENSG00000101098|ENST00000372851|RIMS4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 354.869591 1061.58694 0.13457 4.7753E-05 0.96463 0.00034232 1.0992 0.00039007 354.8699059289012 31.551 0.21928 31.448 31.333 31.553 -0.10269 -0.089665 0.0011145 NaN 9.544 17 8 3 NaN NaN NaN NaN 0 NaN NaN 0 3945800 + 78516 18128 52603 53714 0.05861431851622001 YLPDLSKRA 9 Unmodified _YLPDLSKRA_ 0 0 0 REV__ENSG00000101098|ENST00000372851|RIMS4 REV__ENSG00000101098|ENST00000372851|RIMS4 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 354.869591 1061.58694 1.791 0.00063558 -0.48968 -0.00017377 1.3013 0.00046181 354.8693983731947 35.752 0.4398 31.56 31.301 31.741 -4.1928 0.021752 -0.0004338 NaN 9.544 58 27 3 NaN NaN NaN NaN 0 NaN NaN 0 31094000 + 78517 18128 52603 53714 0.05861431851622001 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.3080444335938 2 576.308406 1150.60226 0.74797 0.00043106 0.040644 2.3423E-05 0.78862 0.00045449 576.3085749559659 73.587 0.44244 73.587 73.365 73.807 0 37 20 3 0 0 0 0.30202 1 40936 40936 17.113 8.3675 1 715900 78518 4555 52604 53715 91210 91210 0.03298298648792297 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.3087158203125 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 74.017 1 73.541 73.041 74.041 -0.47588 0 0 0 0.10759 1 40513 40513 41.84 12.758 1 78519 4555 52604 53715 91211 91211 0.03298298648792297 YLPEDFIRV 9 Unmodified _YLPEDFIRV_ 0 0 0 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 ENSG00000134070|ENST00000256458|IRAK2 MSMS AL20221201_MKP_PDAC_01 4 576.3063354492188 2 576.308406 1150.60226 NaN NaN NaN NaN NaN NaN NaN 84.301 1 78.126 77.626 78.626 -6.1757 0 0 0 0.22437 1 55453 55453 29.082 0.59474 1 78520 4555 52604 53715 91212 91212 0.03298298648792297 YLPELLQTV 9 Unmodified _YLPELLQTV_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.8074340820312 2 538.305332 1074.59611 0.25595 0.00013778 -0.01773 -9.5443E-06 0.23822 0.00012823 538.3052604204337 85.023 0.2852 85.023 84.829 85.115 0 23 16 2 0 0 0 0.54444 1 47077 47077 4.756 0.81161 1 1335600 78521 8124 52605 53716 91213 91213 0.0617978041727838 YLPELLQTV 9 Unmodified _YLPELLQTV_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MSMS AL20221201_MKP_PDAC_01 4 538.3070068359375 2 538.305332 1074.59611 NaN NaN NaN NaN NaN NaN NaN 94.321 1 88.145 87.645 88.645 -6.1757 0 0 0 0.04157 1 62471 62471 61.357 19.263 1 78522 8124 52605 53716 91214 91214 0.0617978041727838 YLPELLQTV 9 Unmodified _YLPELLQTV_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MSMS AL20221201_MKP_PDAC_01 4 538.3058471679688 2 538.305332 1074.59611 NaN NaN NaN NaN NaN NaN NaN 94.502 1 88.326 87.826 88.826 -6.1757 0 0 0 0.18753 1 62596 62596 32.305 5.4218 1 78523 8124 52605 53716 91215 91215 0.0617978041727838 YLPELLQTV 9 Unmodified _YLPELLQTV_ 0 0 0 nc|ENSG00000171617|O14682-2|ENC1;ENSG00000171617|ENST00000302351|ENC1 nc|ENSG00000171617|O14682-2|ENC1 nc|ENSG00000171617|O14682-2|ENC1 MSMS AL20221201_MKP_PDAC_01 4 538.3058471679688 2 538.305332 1074.59611 NaN NaN NaN NaN NaN NaN NaN 94.681 1 88.505 88.005 89.005 -6.1757 0 0 0 0.065563 1 62716 62716 52.268 14.294 1 78524 8124 52605 53716 91216 91216 0.0617978041727838 YLPEVVDH 8 Unmodified _YLPEVVDH_ 0 0 0 REV__ENSG00000115652|ENST00000283148|UXS1 REV__ENSG00000115652|ENST00000283148|UXS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2449340820312 2 486.245275 970.475997 0.20159 9.8024E-05 -2.4075 -0.0011707 -2.2059 -0.0010726 486.2450746271205 37.423 0.17834 37.423 37.296 37.475 0 19 9 3 0 0 0 0.5284 1 19925 19925 32.117 5.7757 1 3389100 + 78525 19001 52606 53717 91217 91217 -0.010422078564715775 YLPGHFFHL 9 Unmodified _YLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.5311889648438 3 377.53091 1129.5709 0.26155 9.8743E-05 -0.15485 -5.8462E-05 0.1067 4.0281E-05 377.86511822741153 61.878 0.37322 61.846 61.671 62.044 -0.032787 43 18 3 0 0 0 0.070838 2 33864 33760;33864 39.957 24.709 1 14161000 78526 9449 52607 53718 91218;91219 91219 0.01129770405373165 YLPGHFFHL 9 Unmodified _YLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5317077636719 3 377.53091 1129.5709 1.6742 0.00063205 -0.11506 -4.3439E-05 1.5591 0.00058861 377.53092593515464 91.888 0.40313 85.712 85.469 85.872 -6.1757 58 22 3 0 0 0 0.10734 2 60682 60682;60799 32.305 21.506 1 18193000 78527 9449 52607 53718 91220;91221 91220 0.01129770405373165 YLPGHFFHL 9 Unmodified _YLPGHFFHL_ 0 0 0 ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP ENSG00000186088|ENST00000257626|GSAP ENSG00000186088|ENST00000257626|GSAP MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7932739257812 2 565.792727 1129.5709 1.2101 0.00068468 0.013912 7.8714E-06 1.224 0.00069255 565.7924366352869 94.724 0.12941 88.548 88.463 88.592 -6.1757 11 7 2 0 0 0 0.070838 1 62752 62752 45.75 21.076 1 6240200 78528 9449 52607 53718 91222 91222 0.01129770405373165 YLPHCRVS 8 Unmodified _YLPHCRVS_ 0 0 0 REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF REV__ENST00000595091.6_2_19:53854892-53855471:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 487.7471923828125 2 487.747462 973.480371 -0.40273 -0.00019643 -0.91166 -0.00044466 -1.3144 -0.00064109 487.7473535491326 77.372 0.38456 76.89 76.647 77.032 -0.4826 38 17 3 0 0 0 0.79783 1 42308 42308 7.9102 2.6795 1 5133200 + 78529 29206 52608 53719 91223 91223 -0.007430219145589945 YLPHEELF 8 Unmodified _YLPHEELF_ 0 0 0 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant;ENSG00000124459|ENST00000269973|ZNF45 ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant ZNF45|p.R632Sfs*11|1|0.17|ENSG00000124459|chr19:43913542-43913543|TT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2805786132812 2 524.260925 1046.5073 NaN NaN NaN NaN NaN NaN NaN 74.993 1 74.516 74.016 75.016 -0.47714 0 0 0 0.95607 1 41046 41046 9.3474 0 1 78530 3787 52609 53720 91224 91224 -0.014096348223802124 YLPHLCRYIFF 11 Unmodified _YLPHLCRYIFF_ 0 0 0 REV__ENST00000389879.9_1_14:99977546-99977624:+|nuORF REV__ENST00000389879.9_1_14:99977546-99977624:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 491.2778625488281 3 491.256681 1470.74821 1.1841 0.00058168 0.31814 0.00015629 1.5022 0.00073797 491.2572257699357 35.801 0.07518 31.608 31.555 31.63 -4.1928 5 4 2 0 0 0 0.30356 1 20797 20797 5.0475 0.3316 1 3103600 + 78531 26363 52610 53721 91225 91225 0.03166857893188535 YLPHLRVA 8 Unmodified _YLPHLRVA_ 0 0 0 nc|ENSG00000106336|O75426-2|FBXO24;nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24 nc|ENSG00000106336|O75426-2|FBXO24 nc|ENSG00000106336|O75426-2|FBXO24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 484.7873840332031 2 484.787444 967.560336 -0.050183 -2.4328E-05 -0.22604 -0.00010958 -0.27622 -0.00013391 484.7872709285166 41.553 0.17342 41.552 41.444 41.618 -0.0017891 10 7 2 0 0 0 0.46494 1 22227 22227 38.151 0 1 3806500 78532 2418 52611 53722 91226 91226 0.07525787750944346 YLPIDPEK 8 Unmodified _YLPIDPEK_ 0 0 0 REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA REV__nc|ENSG00000113360|Q9NRR4-2|DROSHA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.7640991210938 2 487.7633 973.512048 0.15532 7.5759E-05 1.0026 0.00048904 1.1579 0.0005648 487.7637359125444 37.638 0.19907 37.655 37.532 37.731 0.01704 13 9 2 0 0 0 0.80232 1 20027 20027 5.2307 0 1 2311700 + 78533 18863 52612 53723 91227 91227 0.024232493203840022 YLPITTQFP 9 Unmodified _YLPITTQFP_ 0 0 0 REV__ENSG00000198786|ENST00000361567|MT-ND5 REV__ENSG00000198786|ENST00000361567|MT-ND5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 360.8661499023438 3 360.530576 1078.5699 1.6329 0.0005887 1.7826 0.00064267 3.4154 0.0012314 360.5311880871008 48.376 0.49747 43.142 42.821 43.318 -5.2339 48 29 3 0 0 0 0.48152 1 30077 30077 5.2969 0 1 12134000 + 78534 24057 52613 53724 91228 91228 0.033755112457811265 YLPKLKKIYF 10 Unmodified _YLPKLKKIYF_ 0 0 0 REV__ENSG00000117501|ENST00000367759|MROH9 REV__ENSG00000117501|ENST00000367759|MROH9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.9080200195312 2 656.905017 1311.79548 2.1161 0.0013901 0.97881 0.00064299 3.0949 0.0020331 656.9057070909936 100.26 0.1431 100.22 100.12 100.27 -0.036301 8 4 2 0 0 0 0.70734 1 55697 55697 4.3292 2.485 1 8097700 + 78535 19111 52614 53725 91229 91229 0.15205460435845453 YLPKLKKIYF 10 Unmodified _YLPKLKKIYF_ 0 0 0 REV__ENSG00000117501|ENST00000367759|MROH9 REV__ENSG00000117501|ENST00000367759|MROH9 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 656.905017 1311.79548 2.1161 0.0013901 0.97881 0.00064299 3.0949 0.0020331 656.9057070909936 100.26 0.1431 100.22 100.12 100.27 -0.036301 0 0 NaN 4.3292 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 8097700 + 78536 19111 52614 53725 0.15205460435845453 YLPLHMVTY 9 Unmodified _YLPLHMVTY_ 0 0 0 REV__ENSG00000162104|ENST00000294016|ADCY9 REV__ENSG00000162104|ENST00000294016|ADCY9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.288330078125 2 568.794078 1135.5736 0.47581 0.00027064 -0.44482 -0.00025301 0.030991 1.7627E-05 568.7942912504291 59.366 0.50639 58.875 58.665 59.171 -0.49079 70 23 5 0 0 0 0.48152 1 32432 32432 8.5933 0.68312 1 15721000 + 78537 21625 52615 53726 91230 91230 0.011238577480298773 YLPLHRGL 8 Unmodified _YLPLHRGL_ 0 0 0 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 484.7885131835938 2 484.787444 967.560336 0.59715 0.00028949 0.41663 0.00020198 1.0138 0.00049147 484.7875579651754 46.183 0.30597 41.229 41.035 41.341 -4.9549 34 20 2 0 0 0 0.37649 1 28431 28431 46.921 0 1 18810000 + 78538 29883 52616 53727 91231 91231 0.07525787750955715 YLPLHRGL 8 Unmodified _YLPLHRGL_ 0 0 0 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 484.787444 967.560336 -0.17774 -8.6168E-05 -0.72214 -0.00035008 -0.89989 -0.00043625 484.78729844800716 41.811 0.18622 41.504 41.411 41.597 -0.30682 0.076262 -0.00068105 NaN 46.921 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 3237500 + 78539 29883 52616 53727 0.07525787750955715 YLPLHRGL 8 Unmodified _YLPLHRGL_ 0 0 0 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 REV__nc|ENSG00000196642|Q3YEC7-3|RABL6 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 484.787444 967.560336 0.59715 0.00028949 0.41663 0.00020198 1.0138 0.00049147 484.7875579651754 46.183 0.30597 41.229 41.035 41.341 -4.9549 -0.19965 0.00042308 NaN 46.921 34 20 2 NaN NaN NaN NaN 0 NaN NaN 0 18810000 + 78540 29883 52616 53727 0.07525787750955715 YLPLPEAA 8 Unmodified _YLPLPEAA_ 0 0 0 nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000081818|ENST00000194152|PCDHB4;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14;ENSG00000177839|ENST00000316105|PCDHB9;PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000081818|ENST00000194152|PCDHB4;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000177839|ENST00000316105|PCDHB9;PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant ENSG00000081818|ENST00000194152|PCDHB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.4725341796875 1 873.471646 872.46437 0.14206 0.00012409 0.28387 0.00024796 0.42594 0.00037204 873.4720204613207 85.058 0.53242 85.058 84.807 85.34 0 48 27 2 0 0 0 0.44122 1 47059 47059 40.449 0 1 4079900 78541 1332;3510;9960;3509;8710;16683 52617 53728 91232 91232 0.023035951201904936 YLPLPEAA 8 Unmodified _YLPLPEAA_ 0 0 0 nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000120328|ENST00000239450|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000081818|ENST00000194152|PCDHB4;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000120327|ENST00000239449|PCDHB14;ENSG00000177839|ENST00000316105|PCDHB9;PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000081818|ENST00000194152|PCDHB4;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENSG00000177839|ENST00000316105|PCDHB9;PCDHB8|p.Q669H|1|0.19|ENSG00000120322|chr5:141180041-141180041|G/T|missense_variant ENSG00000081818|ENST00000194152|PCDHB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 873.4711303710938 1 873.471646 872.46437 -0.10766 -9.4038E-05 -0.82288 -0.00071877 -0.93054 -0.0008128 873.4708953408971 85.51 0.60719 85.009 84.715 85.322 -0.5015 136 48 3 0 0 0 0.44122 1 46763 46763 40.449 0 1 24204000 78542 1332;3510;9960;3509;8710;16683 52617 53728 91233 91233 0.023035951201904936 YLPNGRFKEF 10 Unmodified _YLPNGRFKEF_ 0 0 0 ENSG00000158669|ENST00000396987|GPAT4;ENST00000523906.1_1_8:41468306-41470394:+|nuORF ENSG00000158669|ENST00000396987|GPAT4 ENSG00000158669|ENST00000396987|GPAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 635.8344116210938 2 635.83258 1269.65061 2.2522 0.001432 1.288 0.00081895 3.5401 0.0022509 635.8335593859132 96.299 0.34144 96.292 96.104 96.445 -0.007019 25 11 3 0 0 0 0.44373 1 53485 53485 19.257 3.4098 1 4220400 78543 6601 52618 53729 91234 91234 0.02656792288712495 YLPNQDCL 8 Unmodified _YLPNQDCL_ 0 0 0 nc|ENSG00000165694|Q6ZUT3-2|FRMD7;ENSG00000165694|ENST00000298542|FRMD7 nc|ENSG00000165694|Q6ZUT3-2|FRMD7 nc|ENSG00000165694|Q6ZUT3-2|FRMD7 MSMS AL20221201_MKP_PDAC_01 4 483.2227478027344 2 483.223485 964.432418 NaN NaN NaN NaN NaN NaN NaN 79.752 1 73.576 73.076 74.076 -6.1757 0 0 0 0.9249 1 52284 52284 15.768 0 1 78544 7376 52619 53730 91235 91235 -0.05122140625269367 YLPPATQVV 9 Unmodified _YLPPATQVV_ 0 0 0 ENSG00000141543|ENST00000649764|EIF4A3;ENST00000575978.1_1_17:78112818-78113115:-|nuORF ENSG00000141543|ENST00000649764|EIF4A3 ENSG00000141543|ENST00000649764|EIF4A3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.2414855957031 2 494.279118 986.543683 0.51326 0.00025369 -1.0352 -0.00051167 -0.52193 -0.00025798 494.27838123195914 53.949 0.5761 53.483 53.265 53.841 -0.46664 45 28 2 0 0 0 0.17718 1 29246 29246 20.454 4.6064 1 2666100 78545 5348 52620 53731 91236 91236 0.049872420743326984 YLPPCDHPLH 10 Unmodified _YLPPCDHPLH_ 0 0 0 ENST00000465608.1_1_10:99344477-99358580:+|nuORF;ENST00000370647.8_1_10:99344420-99361731:+|nuORF ENST00000465608.1_1_10:99344477-99358580:+|nuORF ENST00000465608.1_1_10:99344477-99358580:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 397.8587036132812 3 397.858698 1190.55426 0.10271 4.0863E-05 1.5672 0.00062351 1.6699 0.00066437 397.85905841685354 79.421 0.28873 79.476 79.336 79.625 0.054977 22 10 3 0 0 0 0.71123 1 43882 43882 0.69767 0 1 3369800 78546 12338 52621 53732 91237 91237 -0.03339098542915053 YLPPLFWRF 9 Unmodified _YLPPLFWRF_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.8418579101562 2 619.839677 1237.6648 3.6742 0.0022774 0.86333 0.00053513 4.5376 0.0028126 619.8399358124664 99.554 0.15597 99.518 99.427 99.583 -0.036301 19 5 4 0 0 0 0.016184 1 55289 55289 67.344 67.344 1 13911000 78547 2708 52622 53733 91238 91238 0.055474895076486064 YLPPLFWRF 9 Unmodified _YLPPLFWRF_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.8421630859375 2 619.839677 1237.6648 1.1613 0.00071981 3.2283 0.002001 4.3896 0.0027208 619.8414217656481 100.79 0.12897 94.611 94.541 94.67 -6.1757 21 8 3 0 0 0 0.06187 1 67488 67488 42.095 19.358 1 78918000 78548 2708 52622 53733 91239 91239 0.055474895076486064 YLPPPDHGAPA 11 Unmodified _YLPPPDHGAPA_ 0 0 0 nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;nc|ENSG00000196498|Q9Y618-2|NCOR2;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;ENST00000474079.1_1_12:124818968-124819707:-|nuORF;ENST00000461081.2_1_12:124816664-124819403:-|nuORF nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000196498|Q9Y618-5|NCOR2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.786376953125 2 567.782556 1133.55056 0.76482 0.00043425 1.8364 0.0010427 2.6012 0.0014769 567.784940234082 82.619 1.8045 76.444 75.637 77.442 -6.1757 229 99 3 0 0 0 0.46578 1 54139 54139 18.146 1.0335 1 40995000 78549 9828 52623 53734 91240 91240 -0.01087445045095592 YLPQWIQR 8 Unmodified _YLPQWIQR_ 0 0 0 REV__ENST00000370651.5_1_6:64290190-64290403:+|nuORF REV__ENST00000370651.5_1_6:64290190-64290403:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5612487792969 3 368.538064 1102.59236 0.21682 7.9905E-05 0.76502 0.00028194 0.98184 0.00036184 368.5383702968555 39.318 0.27303 39.33 39.196 39.469 0.011452 27 12 3 0 0 0 8.7369 1 20888 20888 6.7232 1.8262 1 2770200 + 78550 26064 52624 53735 91241 91241 0.04517155434086817 YLPSEHYF 8 Unmodified _YLPSEHYF_ 0 0 0 REV__B4GALNT4|p.R391H|1|0.17|ENSG00000182272|chr11:376150-376150|G/A|missense_variant REV__B4GALNT4|p.R391H|1|0.17|ENSG00000182272|chr11:376150-376150|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.2446899414062 2 528.245275 1054.476 NaN NaN NaN NaN NaN NaN NaN 85.684 1 85.182 84.682 85.682 -0.5015 0 0 0 0.9706 1 46895 46895 6.3541 0 1 + 78551 16742 52625 53736 91242 91242 -0.049062078564929834 YLPSGLEARF 10 Unmodified _YLPSGLEARF_ 0 0 0 REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8749084472656 3 384.873113 1151.59751 1.2077 0.0004648 1.1083 0.00042655 2.316 0.00089135 384.8735026338282 48.096 0.53633 42.862 42.451 42.988 -5.2339 51 32 2 0 0 0 0.60623 1 29805 29805 6.1918 2.3155 1 10185000 + 78552 20602 52626 53737 91243 91243 0.027774145060448063 YLPSTPLRW 9 Unmodified _YLPSTPLRW_ 0 0 0 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 ENSG00000121900|ENST00000373463|TMEM54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.8117065429688 2 566.811116 1131.60768 1.0189 0.00057753 0.32076 0.00018181 1.3397 0.00075934 566.8112874782014 65.608 0.30568 65.608 65.52 65.825 7.6294E-06 36 14 3 0 0 0 0.047714 1 35971 35971 58.679 28.454 1 6053100 78553 3607 52627 53738 91244 91244 0.04714022231269155 YLPSYGTLL 9 Unmodified _YLPSYGTLL_ 0 0 0 nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 nc|ENSG00000138759|Q86XX4|FRAS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 513.7775268554688 2 513.778951 1025.54335 NaN NaN NaN NaN NaN NaN NaN 84.901 1 84.964 84.464 85.464 0.063171 0 0 0 0.096036 1 46991 46991 44.407 0.54872 1 78554 5100 52628 53739 91245 91245 0.03159822354473363 YLQENVRAEEF 11 Unmodified _YLQENVRAEEF_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.34326171875 2 699.338424 1396.66229 0.224 0.00015665 0.86851 0.00060738 1.0925 0.00076403 699.3389419838051 53.151 0.47299 53.151 52.88 53.353 0 62 21 5 0 0 0 0.39949 1 29536 29536 21.537 12.792 1 29772000 + 78555 23146 52629 53740 91246 91246 -0.020170554786318462 YLQENVRAEEF 11 Unmodified _YLQENVRAEEF_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3135375976562 2 699.338424 1396.66229 0.224 0.00015665 0.86851 0.00060738 1.0925 0.00076403 699.3389419838051 53.151 0.47299 53.151 52.88 53.353 0 62 21 5 0 0 0 0.27833 1 29553 29553 27.629 22.732 1 29772000 + 78556 23146 52629 53740 91247 91247 -0.020170554786318462 YLQENVRAEEF 11 Unmodified _YLQENVRAEEF_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 699.338424 1396.66229 0.32288 0.0002258 0.36825 0.00025753 0.69113 0.00048333 699.338597424985 53.856 0.35918 53.389 53.208 53.567 -0.46664 0.0611 -0.00029681 NaN 21.537 68 17 5 NaN NaN NaN NaN 0 NaN NaN 0 67521000 + 78557 23146 52629 53740 -0.020170554786318462 YLQENVRAEEF 11 Unmodified _YLQENVRAEEF_ 0 0 0 REV__ENSG00000180251|ENST00000295269|SLC9A4 REV__ENSG00000180251|ENST00000295269|SLC9A4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 699.338424 1396.66229 -0.10067 -7.0403E-05 0.40514 0.00028333 0.30447 0.00021293 699.3383341140403 53.508 0.2556 53.444 53.262 53.517 -0.063423 0.11627 -0.00024521 NaN 21.537 27 12 4 NaN NaN NaN NaN 0 NaN NaN 0 9168900 + 78558 23146 52629 53740 -0.020170554786318462 YLQEYWDER 9 Unmodified _YLQEYWDER_ 0 0 0 REV__ENSG00000109452|ENST00000262992|INPP4B REV__ENSG00000109452|ENST00000262992|INPP4B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.5305480957031 3 434.531415 1300.57242 0.6381 0.00027727 -2.3204 -0.0010083 -1.6823 -0.000731 434.5299869053663 29.961 0.35858 29.88 29.77 30.128 -0.080429 31 13 4 0 0 0 0.41742 1 15515 15515 7.609 0 1 6159100 + 78559 18657 52630 53741 91248 91248 -0.06584685087227626 YLQGETVRV 9 Unmodified _YLQGETVRV_ 0 0 0 CON__Q28085 CON__Q28085 CON__Q28085 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7902221679688 2 532.790381 1063.56621 -0.053041 -2.826E-05 0.40722 0.00021696 0.35418 0.0001887 532.7905503192568 44.543 0.26736 44.543 44.397 44.664 0 36 13 4 0 0 0 0.25681 1 24298 24298 19.257 0 1 116000000 + 78560 187 52631 53742 91249 91249 0.036968414719467546 YLQGFQILCD 10 Unmodified _YLQGFQILCD_ 0 0 0 ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483832.5_1_1:155581756-155582119:+|nuORF;nc|ENSG00000125459|Q9BUK6-5|MSTO1;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1 ENST00000494995.5_1_1:155580896-155583988:+|nuORF ENST00000494995.5_1_1:155580896-155583988:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 400.5300598144531 3 400.530358 1198.56925 0.24862 9.9579E-05 -1.7738 -0.00071046 -1.5252 -0.00061088 400.5297860519892 48.071 0.19686 48.033 47.946 48.142 -0.038647 15 9 2 0 0 0 0.6966 1 25931 25931 1.5923 0 1 1135400 78561 14344 52632 53743 91250 91250 -0.022096514655459032 YLQKDSQLSYF 11 Unmodified _YLQKDSQLSYF_ 0 0 0 REV__ENSG00000115368|ENST00000314761|WDR75 REV__ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 464.5661010742188 3 464.566237 1390.67688 0.33836 0.00015719 0.012113 5.6274E-06 0.35048 0.00016282 464.56627251863347 53.536 0.28019 53.084 52.943 53.223 -0.45173 45 13 4 0 0 0 0.73992 1 29034 29034 0.50596 0 1 13402000 + 78562 18975 52633 53744 91251 91251 -0.002829833304758722 YLQKVMIY 8 Unmodified _YLQKVMIY_ 0 0 0 REV__nc|ENSG00000198625|O15151-3|MDM4 REV__nc|ENSG00000198625|O15151-3|MDM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 353.1969604492188 3 353.196539 1056.56779 0.049477 1.7475E-05 3.3497 0.0011831 3.3991 0.0012006 353.19735685723026 31.206 0.20668 31.206 31.132 31.339 0 16 9 3 0 0 0 0.79982 1 16259 16259 6.7232 0 1 1013600 + 78563 24032 52634 53745 91252 91252 0.041767592363612494 YLQLWRLL 8 Unmodified _YLQLWRLL_ 0 0 0 ENSG00000180998|ENST00000321662|GPR137C ENSG00000180998|ENST00000321662|GPR137C ENSG00000180998|ENST00000321662|GPR137C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8905639648438 3 368.890327 1103.64915 0.5975 0.00022041 0.25112 9.2636E-05 0.84863 0.00031305 368.89038347480374 58.435 0.27154 58.374 58.215 58.486 -0.060719 32 13 3 0 0 0 0.76859 1 31792 31792 7.9102 2.1783 1 4642700 78564 8939 52635 53746 91253 91253 0.10147202990606274 YLQMAQNGSF 10 Unmodified _YLQMAQNGSF_ 0 0 0 nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1;ENST00000526890.5_1_11:3022346-3038536:-|nuORF nc|ENSG00000110619|P49589|CARS1 nc|ENSG00000110619|P49589|CARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2689819335938 2 579.766049 1157.51754 0.47289 0.00027416 1.3852 0.00080311 1.8581 0.0010773 580.2684311467433 89.317 0.36324 88.815 88.617 88.98 -0.50172 39 15 3 0 0 0 0.6606 1 48811 48811 7.2892 0 1 1700100 78565 2727 52636 53747 91254 91254 -0.054913951594471655 YLQNHFYGSL 10 Unmodified _YLQNHFYGSL_ 0 0 0 AOC2|p.G448S|1|0.3|ENSG00000131480|chr17:42845968-42845968|G/A|missense_variant AOC2|p.G448S|1|0.3|ENSG00000131480|chr17:42845968-42845968|G/A|missense_variant AOC2|p.G448S|1|0.3|ENSG00000131480|chr17:42845968-42845968|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 621.3013305664062 2 621.301113 1240.58767 NaN NaN NaN NaN NaN NaN NaN 54.087 1 48.222 47.722 48.722 -5.8653 0 0 0 0.61655 1 34258 34258 24.021 9.1823 1 78566 31 52637 53748 91255 91255 -0.022997734993168706 YLQNVSLSL 9 Unmodified _YLQNVSLSL_ 0 0 0 ENSG00000111452|ENST00000261654|ADGRD1;nc|ENSG00000111452|Q6QNK2-4|ADGRD1 ENSG00000111452|ENST00000261654|ADGRD1 ENSG00000111452|ENST00000261654|ADGRD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.7865600585938 2 518.787307 1035.56006 0.091334 4.7383E-05 -0.24113 -0.0001251 -0.1498 -7.7713E-05 518.7868519209454 38.249 0.20478 38.266 38.151 38.355 0.01704 17 8 3 0 0 0 0.16226 1 20357 20357 26.884 2.2098 1 2371100 78567 2792 52638 53749 91256 91256 0.043703232404368464 YLQPQLPKL 9 Unmodified _YLQPQLPKL_ 0 0 0 REV__nc|ENSG00000123473|Q15468|STIL REV__nc|ENSG00000123473|Q15468|STIL MULTI-MSMS AL20221201_MKP_PDAC_01 4 367.2214965820312 3 367.221853 1098.64373 0.79013 0.00029015 -1.0005 -0.00036739 -0.21032 -7.7235E-05 367.22171009142994 15.382 0.19604 12.855 12.796 12.992 -2.5273 74 43 2 0 0 0 0.30562 1 7891 7891 11.495 0 1 4184100 + 78568 19389 52639 53750 91257 91257 0.09835479408138781 YLQQNFEPMQ 10 Unmodified _YLQQNFEPMQ_ 0 0 0 ENSG00000196553|ENST00000636229|CCDC196 ENSG00000196553|ENST00000636229|CCDC196 ENSG00000196553|ENST00000636229|CCDC196 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 649.302001953125 2 649.297713 1296.58087 0.16317 0.00010594 4.0407 0.0026236 4.2038 0.0027295 649.2997630786855 51.814 0.3841 51.381 51.346 51.73 -0.43367 30 19 3 0 0 0 0.20962 1 28046 28046 32.786 11.249 1 6496400 78569 9839 52640 53751 91258 91258 -0.05555454442219343 YLQREWRF 8 Unmodified _YLQREWRF_ 0 0 0 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 ENSG00000215262|ENST00000399881|KCNU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.313720703125 2 599.311815 1196.60908 -0.21885 -0.00013116 -1.458 -0.00087382 -1.6769 -0.001005 599.3111540038054 53.389 0.1837 53.325 53.198 53.381 -0.063423 13 8 2 0 0 0 0.57045 1 28952 28952 28.487 4.4663 1 3710800 78570 10527 52641 53752 91259 91259 0.018636563200288947 YLQRYEKHYHK 11 Unmodified _YLQRYEKHYHK_ 0 0 0 REV__ENST00000461513.1_1_17:49579856-49580498:-|nuORF REV__ENST00000461513.1_1_17:49579856-49580498:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 783.4052124023438 2 782.904599 1563.79465 0.95265 0.00074583 -2.5522 -0.0019981 -1.5995 -0.0012523 783.4037861686159 99.563 0.14189 93.387 93.306 93.448 -6.1757 22 8 4 0 0 0 0.58245 1 66335 66335 20.415 11.031 1 42759000 + 78571 27318 52642 53753 91260 91260 0.03530014048851626 YLQSITELL 9 Unmodified _YLQSITELL_ 0 0 0 REV__ENST00000513495.5_1_4:8230952-8235052:+|nuORF REV__ENST00000513495.5_1_4:8230952-8235052:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 540.3035278320312 2 540.30279 1078.59103 NaN NaN NaN NaN NaN NaN NaN 90.236 1 84.061 83.561 84.561 -6.1757 0 0 0 0.29524 1 59592 59592 25.399 0 1 + 78572 19477 52643 53754 91261 91261 0.05487476554662862 YLQTMNSNL 9 Unmodified _YLQTMNSNL_ 0 0 0 ENSG00000188991|ENST00000344941|SLC15A5 ENSG00000188991|ENST00000344941|SLC15A5 ENSG00000188991|ENST00000344941|SLC15A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2584228515625 2 542.260599 1082.50665 0.28576 0.00015496 -2.834 -0.0015368 -2.5483 -0.0013818 542.2592222067449 51.665 0.24113 51.665 51.561 51.802 0 18 10 2 0 0 0 0.21643 1 28556 28556 21.537 1.0834 1 13779000 78573 9714 52644 53755 91262 91262 -0.03130797533754048 YLQTQHESSI 10 Unmodified _YLQTQHESSI_ 0 0 0 REV__ENSG00000171310|ENST00000303694|CHST11 REV__ENSG00000171310|ENST00000303694|CHST11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.2899169921875 2 603.293485 1204.57242 0.416 0.00025097 -2.5416 -0.0015333 -2.1256 -0.0012824 603.2898134497086 59.912 1.1113 53.797 53.496 54.607 -6.1147 255 60 6 0 0 0 0.29752 1 38485 38485 27.629 0 1 1095700000 + 78574 22551 52645 53756 91263 91263 -0.021686850871901697 YLQVLENK 8 Unmodified _YLQVLENK_ 0 0 0 REV__ENSG00000174684|ENST00000311181|B4GAT1 REV__ENSG00000174684|ENST00000311181|B4GAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.783203125 2 503.782025 1005.5495 0.82779 0.00041702 0.78161 0.00039376 1.6094 0.00081078 503.78250094322226 38.65 0.39741 38.65 38.414 38.811 0 57 19 4 0 0 0 0.25522 2 20624 20624;20741 61.357 6.5839 1 25123000 + 78575 22808 52646 53757 91264;91265 91264 0.046943405859906306 YLQVMPQRW 9 Unmodified _YLQVMPQRW_ 0 0 0 ENSG00000174951|ENST00000645652|FUT1 ENSG00000174951|ENST00000645652|FUT1 ENSG00000174951|ENST00000645652|FUT1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.2109985351562 3 407.546343 1219.6172 0.012267 4.9995E-06 -4.3914 -0.0017897 -4.3791 -0.0017847 407.5449438354716 27.687 0.13351 27.716 27.64 27.774 0.028664 7 5 2 0 0 0 0.20883 1 14397 14397 8.1555 1.9637 1 3197700 78576 8473 52647 53758 91266 91266 0.01617467245159787 YLQYHKQPFR 10 Unmodified _YLQYHKQPFR_ 0 0 0 REV__nc|ENSG00000145526|Q13634-2|CDH18 REV__nc|ENSG00000145526|Q13634-2|CDH18 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.2542419433594 3 460.578811 1378.7146 0.40067 0.00018454 0.15992 7.3654E-05 0.56058 0.00025819 460.5787609980749 45.855 0.27171 45.827 45.702 45.973 -0.028011 20 12 2 0 0 0 0.23966 1 24660 24660 3.3196 1.99 1 5618100 + 78577 20779 52648 53759 91267 91267 0.040395724456402604 YLRAFHAL 8 Unmodified _YLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7796630859375 2 495.779619 989.544686 NaN NaN NaN NaN NaN NaN NaN 75.401 1 75.401 74.901 75.901 0 0 0 0 0.97444 1 41943 41943 2.8892 0 1 78578 4060 52649 53760 91268 91268 0.049495012338979905 YLRAFHAL 8 Unmodified _YLRAFHAL_ 0 0 0 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.7792053222656 2 495.779619 989.544686 0.48804 0.00024196 0.25166 0.00012477 0.7397 0.00036673 495.7796991450942 48.511 0.26822 48.467 48.341 48.609 -0.04369 24 13 2 0 0 0 0.07972 1 26159 26159 106.85 66.397 1 8017800 78579 4060 52649 53760 91269 91269 0.049495012338979905 YLRAIKKPL 9 Unmodified _YLRAIKKPL_ 0 0 0 REV__nc|ENSG00000163714|O15042-2|U2SURP REV__nc|ENSG00000163714|O15042-2|U2SURP MSMS AL20221201_MKP_PDAC_01 4 551.3614501953125 2 551.360776 1100.707 NaN NaN NaN NaN NaN NaN NaN 106.89 1 100.71 100.21 101.21 -6.1757 0 0 0 0.85798 1 71527 71527 0.52476 0 1 + 78580 29744 52650 53761 91270 91270 0.16067464916045537 YLRANHKI 8 Unmodified _YLRANHKI_ 0 0 0 ENST00000454741.5_1_22:28396868-28397276:+|nuORF ENST00000454741.5_1_22:28396868-28397276:+|nuORF ENST00000454741.5_1_22:28396868-28397276:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7974853515625 2 507.795801 1013.57705 0.11919 6.0524E-05 2.604 0.0013223 2.7232 0.0013828 507.79698214765057 90.553 0.25026 90.058 89.912 90.162 -0.49457 12 11 2 0 0 0 0.80143 1 49482 49482 5.7604 0 1 420190 78581 13574 52651 53762 91271 91271 0.07080288636893783 YLRAQQEEY 9 Unmodified _YLRAQQEEY_ 0 0 0 ENSG00000278259|ENST00000614623|MYO19;nc|ENSG00000278259|Q96H55-3|MYO19 ENSG00000278259|ENST00000614623|MYO19 ENSG00000278259|ENST00000614623|MYO19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2884521484375 2 600.288202 1198.56185 -0.51748 -0.00031064 0.54619 0.00032787 0.028708 1.7233E-05 600.2882484877947 24.804 0.16767 24.804 24.718 24.885 0 13 7 2 0 0 0 0.10247 1 12689 12689 32.786 22.712 1 827940 78582 10932 52652 53763 91272 91272 -0.029486677416116436 YLRAVTFEEEI 11 Unmodified _YLRAVTFEEEI_ 0 0 0 REV__ENSG00000155980|ENST00000455537|KIF5A REV__ENSG00000155980|ENST00000455537|KIF5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 685.8626098632812 2 685.353542 1368.69253 1.1105 0.00076106 1.2 0.00082243 2.3105 0.0015835 685.3542734638128 81.496 1.7544 75.321 74.534 76.288 -6.1757 243 98 3 0 0 0 0.42108 1 54159 54159 20.415 3.3016 1 59057000 + 78583 21303 52653 53764 91273 91273 0.02293303186615958 YLRCWACF 8 Unmodified _YLRCWACF_ 0 0 0 ENST00000324868.12_1_12:32908483-32908576:-|nuORF ENST00000324868.12_1_12:32908483-32908576:-|nuORF ENST00000324868.12_1_12:32908483-32908576:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.2410888671875 2 531.238415 1060.46228 0.42122 0.00022377 1.2062 0.00064078 1.6274 0.00086454 531.2389497626422 75.373 0.36382 75.373 75.159 75.523 0 40 16 4 0 0 0 0.80044 1 41874 41874 6.3541 0 1 1886000 78584 11806 52654 53765 91274 91274 -0.06553480160937397 YLRDNELFTKY 11 Unmodified _YLRDNELFTKY_ 0 0 0 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 REV__nc|ENSG00000163491|Q6ZWH5-4|NEK10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.9172058105469 3 487.91727 1460.72998 0.99927 0.00048756 -0.43977 -0.00021457 0.5595 0.00027299 487.9172389152339 83.453 0.69571 77.277 77.005 77.7 -6.1757 82 36 3 0 0 0 0.70435 1 55051 55051 3.8459 0.25885 1 23439000 + 78585 21769 52655 53766 91275 91275 0.0180439445216507 YLRDNYGRDLQ 11 Unmodified _YLRDNYGRDLQ_ 0 0 0 ENST00000525268.2_1_11:77612547-77635854:-|nuORF ENST00000525268.2_1_11:77612547-77635854:-|nuORF ENST00000525268.2_1_11:77612547-77635854:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.56884765625 3 471.568752 1411.68443 NaN NaN NaN NaN NaN NaN NaN 35.23 1 35.23 34.73 35.73 0 0 0 0 0.93933 1 18616 18616 1.2148 0 1 78586 14793 52656 53767 91276 91276 -0.004948310102008691 YLREEDLED 9 Unmodified _YLREEDLED_ 0 0 0 nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 nc|ENSG00000182463|Q9NRE2-2|TSHZ2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.5487060546875 3 394.515542 1180.5248 -0.2681 -0.00010577 -1.3964 -0.00055088 -1.6645 -0.00065665 394.5148452859869 51.289 0.19965 51.236 51.107 51.306 -0.053871 14 9 2 0 0 0 0.21367 1 27792 27792 2.7352 0.99292 1 1447300 78587 9055 52657 53768 91277 91277 -0.05824384078027833 YLRFGDDIK 9 Unmodified _YLRFGDDIK_ 0 0 0 nc|ENSG00000186335|Q495M3-3|SLC36A2;nc|ENSG00000186335|Q495M3-2|SLC36A2;ENSG00000186335|ENST00000335244|SLC36A2 nc|ENSG00000186335|Q495M3-3|SLC36A2 nc|ENSG00000186335|Q495M3-3|SLC36A2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.7747802734375 2 563.798206 1125.58186 0.35985 0.00020288 -0.58083 -0.00032747 -0.22098 -0.00012459 563.7982064287961 51.843 0.22712 51.409 51.285 51.512 -0.43367 18 11 2 0 0 0 0.16895 1 27906 27906 18.146 0 1 4750400 78588 9470 52658 53769 91278 91278 0.024091279889717043 YLRFNRNRTY 10 Unmodified _YLRFNRNRTY_ 0 0 0 REV__ENSG00000164306|ENST00000314970|PRIMPOL REV__ENSG00000164306|ENST00000314970|PRIMPOL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1902465820312 4 351.438918 1401.72657 0.87 0.00030575 1.1924 0.00041906 2.0624 0.00072481 351.4394448457283 14.448 0.039179 11.945 11.911 11.95 -2.5029 6 4 2 0 0 0 0.24011 1 7337 7337 0.15932 0 1 977730 + 78589 21902 52659 53770 91279 91279 0.041771891888402024 YLRFWKDVYLY 11 Unmodified _YLRFWKDVYLY_ 0 0 0 ENST00000359933.5_1_14:96749930-96750203:-|nuORF ENST00000359933.5_1_14:96749930-96750203:-|nuORF ENST00000359933.5_1_14:96749930-96750203:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 783.9147338867188 2 783.411195 1564.80784 1.5772 0.0012356 1.8933 0.0014832 3.4705 0.0027188 783.914436865225 101.04 0.10926 94.86 94.798 94.907 -6.1757 12 5 3 0 0 0 0.59689 1 67739 67739 11.495 5.7629 1 27706000 78590 12153 52660 53771 91280 91280 0.04802452108242505 YLRGASFG 8 Unmodified _YLRGASFG_ 0 0 0 REV__ENSG00000101337|ENST00000398022|TM9SF4 REV__ENSG00000101337|ENST00000398022|TM9SF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.7271728515625 2 435.727052 869.439552 0.35863 0.00015627 0.58267 0.00025389 0.9413 0.00041015 435.7271909284136 24.152 0.3582 21.325 21.091 21.449 -2.8273 44 19 3 0 0 0 0.6895 1 13155 13155 18.135 1.1927 1 10742000 + 78591 18161 52661 53772 91281 91281 -0.00039039962518927496 YLRHPHPVPSG 11 Unmodified _YLRHPHPVPSG_ 0 0 0 REV__ENST00000408923.7_1_5:176799100-176799562:+|nuORF REV__ENST00000408923.7_1_5:176799100-176799562:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.3367919921875 2 630.335821 1258.65709 0.43707 0.0002755 0.59012 0.00037197 1.0272 0.00064747 630.335925700664 56.631 0.43219 50.655 50.446 50.879 -5.9769 54 24 3 0 0 0 0.48615 1 36076 36076 17.113 17.113 1 46693000 + 78592 26673 52662 53773 91282 91282 0.0381073024007037 YLRHSHPGSED 11 Unmodified _YLRHSHPGSED_ 0 0 0 REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF REV__ENST00000601764.5_1_19:4697564-4723732:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8851928710938 3 433.202181 1296.58471 0.123 5.3283E-05 3.8489 0.0016673 3.9719 0.0017206 433.2038004322047 51.641 0.078278 51.582 51.513 51.592 -0.058918 6 3 2 0 0 0 0.30572 1 27942 27942 0.45452 0 1 645760 + 78593 20559 52663 53774 91283 91283 -0.051716486241502935 YLRKFEEYPKF 11 Unmodified _YLRKFEEYPKF_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.9550170898438 4 380.704052 1518.7871 -0.0077197 -2.9389E-06 0.093241 3.5497E-05 0.085521 3.2558E-05 380.7041419821427 51.262 0.21375 50.849 50.698 50.912 -0.41351 21 10 3 0 0 0 0.74046 1 27636 27636 0.45452 0 1 2203900 78594 5705 52664 53775 91284 91284 0.048458617285405126 YLRKFEEYPKF 11 Unmodified _YLRKFEEYPKF_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.7041320800781 4 380.704052 1518.7871 0.41284 0.00015717 -0.29498 -0.0001123 0.11785 4.4867E-05 380.70401529528465 50.883 0.31684 50.83 50.669 50.986 -0.053871 43 15 4 0 0 0 0.74046 1 27509 27509 0.45452 0 1 5927700 78595 5705 52664 53775 91285 91285 0.048458617285405126 YLRKFEEYPKF 11 Unmodified _YLRKFEEYPKF_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.8114318847656 3 507.269643 1518.7871 0.58812 0.00029834 -0.39303 -0.00019937 0.19509 9.8962E-05 507.2692323145044 50.922 0.31812 50.868 50.708 51.026 -0.053871 35 15 3 0 0 0 0.30558 1 27508 27508 2.4348 1.1051 1 6951800 78596 5705 52664 53775 91286 91286 0.048458617285405126 YLRKFEEYPKF 11 Unmodified _YLRKFEEYPKF_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 4 380.704052 1518.7871 -0.0077197 -2.9389E-06 0.093241 3.5497E-05 0.085521 3.2558E-05 380.7041419821427 51.262 0.21375 50.849 50.698 50.912 -0.41351 0.0096752 0.00027968 NaN 0.45452 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2203900 78597 5705 52664 53775 0.048458617285405126 YLRKFEEYPKF 11 Unmodified _YLRKFEEYPKF_ 0 0 0 ENSG00000145545|ENST00000274192|SRD5A1;ENST00000513117.1_1_5:6633573-6668378:+|nuORF;ENST00000442297.1_1_X:138529664-138529832:+|nuORF ENSG00000145545|ENST00000274192|SRD5A1 ENSG00000145545|ENST00000274192|SRD5A1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 4 380.704052 1518.7871 0.41284 0.00015717 -0.29498 -0.0001123 0.11785 4.4867E-05 380.70401529528465 50.883 0.31684 50.83 50.669 50.986 -0.053871 -0.0096752 -0.00031151 NaN 0.45452 43 15 4 NaN NaN NaN NaN 0 NaN NaN 0 5927700 78598 5705 52664 53775 0.048458617285405126 YLRKYLIQY 9 Unmodified _YLRKYLIQY_ 0 0 0 REV__nc|ENSG00000100095|Q9BYH1-3|SEZ6L REV__nc|ENSG00000100095|Q9BYH1-3|SEZ6L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3643798828125 2 630.360973 1258.70739 -0.019997 -1.2605E-05 3.8738 0.0024419 3.8538 0.0024293 630.3631762843111 35.636 0.09919 35.661 35.624 35.723 0.024967 5 4 2 0 0 0 0.39863 1 18878 18878 12.532 1.7076 1 1502600 + 78599 18013 52665 53776 91287 91287 0.08838839845225266 YLRLLVKL 8 Unmodified _YLRLLVKL_ 0 0 0 ENSG00000063177|ENST00000549920|RPL18;ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF ENSG00000063177|ENST00000549920|RPL18 ENSG00000063177|ENST00000549920|RPL18 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.8707580566406 2 509.344595 1016.67464 0.024881 1.2673E-05 -0.45663 -0.00023258 -0.43175 -0.00021991 509.344382101146 98.791 0.096008 92.615 92.564 92.66 -6.1757 12 7 2 0 0 0 0.079151 1 65603 65603 109.63 12.555 1 46652000 78600 858 52666 53777 91288 91288 0.1669667751303905 YLRLRRKL 8 Unmodified _YLRLRRKL_ 0 0 0 REV__ENST00000509910.1_1_5:115167175-115167292:-|nuORF REV__ENST00000509910.1_1_5:115167175-115167292:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.3695678710938 2 559.369467 1116.72438 NaN NaN NaN NaN NaN NaN NaN 86.417 1 86.417 85.917 86.917 0 0 0 0 0.97444 1 47868 47868 0.79363 0 1 + 78601 28133 52667 53778 91289 91289 0.1706880524168355 YLRNNEIF 8 Unmodified _YLRNNEIF_ 0 0 0 REV__nc|ENSG00000274391|P56180-4|TPTE REV__nc|ENSG00000274391|P56180-4|TPTE MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7777709960938 2 534.777274 1067.53999 0.70946 0.0003794 0.36176 0.00019346 1.0712 0.00057287 534.7771240867189 67.327 0.5602 61.152 60.857 61.418 -6.1757 91 31 4 0 0 0 0.5953 1 43807 43807 26.341 5.8877 1 80228000 + 78602 24643 52668 53779 91290 91290 0.008925723004722386 YLRPRHYR 8 Unmodified _YLRPRHYR_ 0 0 0 ENSG00000182613|ENST00000641492|OR2V2 ENSG00000182613|ENST00000641492|OR2V2 ENSG00000182613|ENST00000641492|OR2V2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.5523376464844 3 387.552708 1159.63629 -0.46587 -0.00018055 0.061111 2.3684E-05 -0.40476 -0.00015687 387.5527024540958 20.4 0.24557 20.4 20.27 20.515 0 109 35 4 0 0 0 0.80975 1 10221 10221 0.45834 0 1 28595000 78603 9072 52669 53780 91291 91291 0.0628618465107138 YLRPRHYR 8 Unmodified _YLRPRHYR_ 0 0 0 ENSG00000182613|ENST00000641492|OR2V2 ENSG00000182613|ENST00000641492|OR2V2 ENSG00000182613|ENST00000641492|OR2V2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.5520935058594 3 387.552708 1159.63629 NaN NaN NaN NaN NaN NaN NaN 20.221 1 20.25 19.75 20.75 0.028357 0 0 0 0.97444 1 10228 10228 3.5965 0.8613 1 78604 9072 52669 53780 91292 91292 0.0628618465107138 YLRQQELL 8 Unmodified _YLRQQELL_ 0 0 0 REV__ENSG00000129250|ENST00000320785|KIF1C REV__ENSG00000129250|ENST00000320785|KIF1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7999877929688 2 531.800749 1061.58694 0.033362 1.7742E-05 -1.7944 -0.00095427 -1.7611 -0.00093653 531.7998151693688 54.779 0.19829 54.312 54.222 54.42 -0.46664 15 9 2 0 0 0 0.61462 1 29715 29715 24.674 0 1 2671700 + 78605 19658 52670 53781 91293 91293 0.05861431851622001 YLRRLLLLL 9 Unmodified _YLRRLLLLL_ 0 0 0 ENSG00000141096|ENST00000268793|DPEP3 ENSG00000141096|ENST00000268793|DPEP3 ENSG00000141096|ENST00000268793|DPEP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1172.282470703125 1 1172.78778 1171.7805 0.16114 0.00018899 -3.4357 -0.0040294 -3.2746 -0.0038404 1172.784309906903 85.175 0.25349 85.238 85.112 85.365 0.063171 14 9 2 0 0 0 0.21798 1 47217 47217 2.3027 1.902 1 59760000 78606 5300 52671 53782 91294 91294 0.20148013358539174 YLRRRRRVH 9 Unmodified _YLRRRRRVH_ 0 0 0 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant;ENSG00000112996|ENST00000507110|MRPS30 MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MRPS30|p.V422Yfs*2|1|0.14|ENSG00000112996|chr5:44815144-44815153|TAGTTCACTT/-|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.9359130859375 3 437.937556 1310.79084 NaN NaN NaN NaN NaN NaN NaN 45.028 1 45.006 44.506 45.506 -0.022064 0 0 0 0.85359 1 24173 24173 1.0715 0.56551 1 78607 2937 52672 53783 91295 91295 0.14787433856281496 YLRVVEPQY 9 Unmodified _YLRVVEPQY_ 0 0 0 REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF REV__ENST00000495096.5_1_22:19958242-19966598:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.8165283203125 2 583.813856 1165.61316 0.72974 0.00042603 1.2705 0.00074172 2.0002 0.0011678 583.8155029641937 77.967 1.0607 71.791 71.065 72.126 -6.1757 130 60 4 0 0 0 0.23158 2 50771 50771;51040 20.454 2.3073 1 40865000 + 78608 17990 52673 53784 91296;91297 91296 0.03697701023111222 YLRYRWEWAKL 11 Unmodified _YLRYRWEWAKL_ 0 0 0 REV__ENSG00000153930|ENST00000682825|ANKFN1 REV__ENSG00000153930|ENST00000682825|ANKFN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.9556274414062 3 528.620899 1582.84087 0.41311 0.00021838 -0.61402 -0.00032458 -0.20091 -0.00010621 528.6204776453137 71.976 0.23979 72.015 71.871 72.111 0.039024 40 11 4 0 0 0 0.74429 1 39599 39599 0.094841 0 1 8896200 + 78609 21197 52674 53785 91298 91298 0.07276078950940246 YLSAGLLVLI 10 Unmodified _YLSAGLLVLI_ 0 0 0 REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2 REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 531.3351440429688 2 531.333893 1060.65323 1.0266 0.00054546 0.012806 6.8041E-06 1.0394 0.00055226 531.3339360741594 98.485 0.1441 92.31 92.221 92.365 -6.1757 17 9 2 0 0 0 0.2178 1 65318 65318 32.305 1.6689 1 29432000 + 78610 18712 52675 53786 91299 91299 0.12533247693659177 YLSAMGIF 8 Unmodified _YLSAMGIF_ 0 0 0 nc|ENSG00000153094|O43521-15|BCL2L11;nc|ENSG00000153094|O43521-11|BCL2L11 nc|ENSG00000153094|O43521-15|BCL2L11 nc|ENSG00000153094|O43521-15|BCL2L11 MSMS AL20221201_MKP_PDAC_01 4 451.2279052734375 2 451.228039 900.441526 NaN NaN NaN NaN NaN NaN NaN 18.284 1 15.662 15.162 16.162 -2.6215 0 0 0 0.95201 1 9622 9622 10.183 0 1 78611 16280 52676 53787 91300 91300 -0.012677472689347269 YLSAPKTFN 9 Unmodified _YLSAPKTFN_ 0 0 0 REV__nc|ENSG00000146856|Q8NEM8|AGBL3 REV__nc|ENSG00000146856|Q8NEM8|AGBL3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.2948608398438 2 520.7742 1039.53385 1.3466 0.00070127 -3.0452 -0.0015858 -1.6986 -0.00088458 521.2755858447084 95.398 0.068909 89.222 89.195 89.264 -6.1757 5 3 2 0 0 0 0.16418 1 63193 63193 19.257 0 1 3917500 + 78612 29688 52677 53788 91301 91301 0.01566054068939593 YLSAVRATL 9 Unmodified _YLSAVRATL_ 0 0 0 ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;nc|ENSG00000241553|P59998-2|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 ENSG00000241553|ENST00000397261|ARPC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.291259765625 2 497.290017 992.565481 0.64782 0.00032215 1.4576 0.00072487 2.1055 0.001047 497.2904649118983 46.075 0.15819 46.047 45.948 46.107 -0.028011 9 6 2 0 0 0 0.30202 1 24802 24802 17.113 0 1 985710 78613 10683 52678 53789 91302 91302 0.06890046822900331 YLSDFICCL 9 2 Carbamidomethyl (C) _YLSDFIC(Carbamidomethyl (C))C(Carbamidomethyl (C))L_ YLSDFIC(1)C(1)L YLSDFIC(47)C(47)L 0 2 0 ENSG00000164163|ENST00000296577|ABCE1;ENST00000444025.1_1_7:23602816-23603164:-|nuORF ENSG00000164163|ENST00000296577|ABCE1 ENSG00000164163|ENST00000296577|ABCE1 MSMS AL20221201_MKP_PDAC_01 4 595.7648315429688 2 595.76466 1189.51477 NaN NaN NaN NaN NaN NaN NaN 98.707 1 92.531 92.031 93.031 -6.1757 0 0 0 0.086291 1 65515 65515 46.921 28.786 1 78614 7151 52679 53790 91303 91303 700;701 -0.07240986608621824 YLSDLLPG 8 Unmodified _YLSDLLPG_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 877.4651489257812 1 877.466561 876.459284 -0.075234 -6.6015E-05 0.62876 0.00055172 0.55353 0.0004857 877.4668792768987 75.815 0.28967 75.338 75.19 75.479 -0.47714 18 12 2 0 0 0 0.24182 1 41478 41478 63.394 0 1 1098400 + 78615 18566 52680 53791 91304 91304 0.016112912575863447 YLSDNVHLV 9 Unmodified _YLSDNVHLV_ 0 0 0 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 ENSG00000105401|ENST00000222005|CDC37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2820434570312 2 530.277106 1058.53966 0.77818 0.00041265 -0.094433 -5.0076E-05 0.68375 0.00036257 530.2770218185614 49.704 0.50756 49.704 49.352 49.859 0 71 22 4 0 0 0 0.031062 1 27209 27209 54.774 24.549 1 169550000 78616 2317 52681 53792 91305 91305 0.012731525806202626 YLSEAHRDEL 10 Unmodified _YLSEAHRDEL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.2884521484375 2 616.798934 1231.58332 0.10762 6.6378E-05 0.39475 0.00024348 0.50237 0.00030986 617.303017073945 52.213 0.11121 52.213 52.152 52.264 0 5 4 2 0 0 0 0.23952 1 28865 28865 2.9952 0 1 936310 78617 10835 52682 53793 91306 91306 -0.023212827129100333 YLSEEDMVF 9 Unmodified _YLSEEDMVF_ 0 0 0 REV__nc|ENSG00000058335|Q13972-2|RASGRF1 REV__nc|ENSG00000058335|Q13972-2|RASGRF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2924194335938 2 566.74699 1131.47943 0.3117 0.00017666 0.72332 0.00040994 1.035 0.0005866 566.7477274599737 81.348 0.27026 81.348 81.195 81.465 0 21 11 2 0 0 0 0.21798 1 45096 45096 2.3027 0 1 347350 + 78618 17312 52683 53794 91307 91307 -0.08105325864789847 YLSEEVQAV 9 Unmodified _YLSEEVQAV_ 0 0 0 ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;ENSG00000168883|ENST00000323701|USP39;ENST00000496047.5_1_2:85872080-85873002:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF ENST00000459775.5_1_2:85848673-85875928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.261474609375 2 519.261122 1036.50769 0.19478 0.00010114 0.54686 0.00028396 0.74163 0.0003851 519.2616015353742 45.42 0.22319 45.42 45.363 45.586 0 18 12 2 0 0 0 0.078417 1 24764 24764 38.151 16.405 1 19652000 78619 7807 52684 53795 91308 91308 -0.00910259893203147 YLSERGSCF 9 Unmodified _YLSERGSCF_ 0 0 0 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2396850585938 2 531.239667 1060.46478 0.48664 0.00025852 -0.016804 -8.9272E-06 0.46984 0.0002496 531.2395721402038 75.783 0.37856 75.306 75.126 75.505 -0.47714 75 16 6 0 0 0 0.53666 1 41543 41543 5.2307 0 1 11966000 78620 5577 52685 53796 91309 91309 -0.06303353222256192 YLSEYLNQLNL 11 Unmodified _YLSEYLNQLNL_ 0 0 0 REV__nc|ENSG00000173821|Q63HN8|RNF213 REV__nc|ENSG00000173821|Q63HN8|RNF213 MSMS AL20221201_MKP_PDAC_01 4 685.3558959960938 2 685.353542 1368.69253 NaN NaN NaN NaN NaN NaN NaN 71.56 1 65.385 64.885 65.885 -6.1757 0 0 0 0.64135 1 46771 46771 19.257 3.1079 1 + 78621 22751 52686 53797 91310 91310 0.022933031865932207 YLSFRDKL 8 Unmodified _YLSFRDKL_ 0 0 0 nc|ENSG00000128159|Q96RT7-2|TUBGCP6;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6;ENST00000498611.5_1_22:50657979-50682900:-|nuORF nc|ENSG00000128159|Q96RT7-2|TUBGCP6 nc|ENSG00000128159|Q96RT7-2|TUBGCP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2838745117188 2 521.290017 1040.56548 0.63688 0.000332 -0.71695 -0.00037374 -0.080067 -4.1738E-05 521.2894331074704 58.26 0.70985 58.199 57.858 58.568 -0.060722 80 35 4 0 0 0 0.63229 1 31622 31622 23.148 6.0619 1 48779000 78622 4048 52687 53798 91311 91311 0.0468204682290434 YLSGPELLL 9 Unmodified _YLSGPELLL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.7868041992188 2 502.786776 1003.559 0.45474 0.00022864 0.021797 1.0959E-05 0.47653 0.00023959 502.7867110448282 85.069 0.96288 85.069 84.668 85.631 0 168 46 5 0 0 0 0.078417 3 47091 46995;47091;47293 38.151 6.0342 1 120050000 + 78623 19506 52688 53799 91312;91313;91314 91313 0.057361088715197184 YLSGPELLL 9 Unmodified _YLSGPELLL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.7862854003906 2 502.786776 1003.559 -0.16691 -8.3921E-05 0.27617 0.00013885 0.10926 5.4932E-05 502.7868481118376 84.848 0.48436 84.911 84.679 85.164 0.063171 57 20 3 0 0 0 0.045537 2 46895 46895;47013 46.921 2.5139 1 81211000 + 78624 19506 52688 53799 91315;91316 91315 0.057361088715197184 YLSGPELLL 9 Unmodified _YLSGPELLL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.78759765625 2 502.786776 1003.559 0.22793 0.0001146 -0.18462 -9.2822E-05 0.043319 2.178E-05 502.7863847172685 93.234 2.4612 87.058 86.56 89.021 -6.1757 468 152 5 0 0 0 0.045537 6 61406 61406;61533;61665;61791;62474;62602 46.921 7.0764 1 3891199999.9999995 + 78625 19506 52688 53799 91317;91318;91319;91320;91321;91322 91317 0.057361088715197184 YLSGPELLL 9 Unmodified _YLSGPELLL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 502.786776 1003.559 0.45474 0.00022864 0.021797 1.0959E-05 0.47653 0.00023959 502.7867110448282 85.069 0.96288 85.069 84.668 85.631 0 0.0792 -0.00010733 NaN 46.921 168 46 5 NaN NaN NaN NaN 0 NaN NaN 0 120050000 + 78626 19506 52688 53799 0.057361088715197184 YLSGPELLL 9 Unmodified _YLSGPELLL_ 0 0 0 REV__ENSG00000125652|ENST00000245812|ALKBH7 REV__ENSG00000125652|ENST00000245812|ALKBH7 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 502.786776 1003.559 -0.16691 -8.3921E-05 0.27617 0.00013885 0.10926 5.4932E-05 502.7868481118376 84.848 0.48436 84.911 84.679 85.164 0.063171 -0.0792 0.00014846 NaN 46.921 57 20 3 NaN NaN NaN NaN 0 NaN NaN 0 81211000 + 78627 19506 52688 53799 0.057361088715197184 YLSIFRKF 8 Unmodified _YLSIFRKF_ 0 0 0 ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF ENSG00000014216|ENST00000279247|CAPN1 ENSG00000014216|ENST00000279247|CAPN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 537.309326171875 2 537.310752 1072.60695 0.72742 0.00039085 -2.6625 -0.0014306 -1.9351 -0.0010398 537.3093808215064 93.771 0.22377 87.595 87.412 87.636 -6.1757 21 12 2 0 0 0 0.13843 1 62032 62032 103.75 57.727 1 9366900 78628 486 52689 53800 91323 91323 0.07355227582229418 YLSKTIHPQI 10 Unmodified _YLSKTIHPQI_ 0 0 0 ENSG00000254440|ENST00000527246|PBOV1 ENSG00000254440|ENST00000527246|PBOV1 ENSG00000254440|ENST00000527246|PBOV1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 400.0449523925781 3 400.564279 1198.67101 0.79524 0.00031855 -1.3572 -0.00054365 -0.56195 -0.0002251 400.56385082598126 43.117 0.28192 38.352 38.18 38.462 -4.7648 30 18 2 0 0 0 0.23871 1 26208 26208 1.3296 0.11481 1 10260000 78629 10773 52690 53801 91324 91324 0.0796196294852507 YLSLPLTF 8 Unmodified _YLSLPLTF_ 0 0 0 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11 MSMS AL20221201_MKP_PDAC_01 4 477.2705993652344 2 477.270761 952.52697 NaN NaN NaN NaN NaN NaN NaN 82.325 1 76.15 75.65 76.65 -6.1757 0 0 0 0.63034 1 54072 54072 32.117 3.6301 1 + 78630 22405 52691 53802 91325 91325 0.048807411883899476 YLSMPKRRKF 10 Unmodified _YLSMPKRRKF_ 0 0 0 ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 ENSG00000175105|ENST00000636215|ZNF654 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 663.3797607421875 2 663.379175 1324.7438 NaN NaN NaN NaN NaN NaN NaN 74.331 1 73.855 73.355 74.355 -0.47588 0 0 0 0.98914 1 40681 40681 1.8442 0.19162 1 78631 8485 52692 53803 91326 91326 0.09441393470274306 YLSMYSLED 9 Unmodified _YLSMYSLED_ 0 0 0 nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 nc|ENSG00000183378|Q7RTZ1|OVCH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.1675720214844 3 374.167086 1119.47943 0.064652 2.419E-05 1.3278 0.00049681 1.3924 0.000521 374.167674383871 92.561 0.30052 92.561 92.418 92.718 0 30 18 2 0 0 0 0.58865 1 51183 51183 1.0715 0 1 840200 78632 9143 52693 53804 91327 91327 -0.07553325864773797 YLSNVDVYL 9 Unmodified _YLSNVDVYL_ 0 0 0 ENST00000497615.1_1_1:1685693-1686165:-|nuORF;nc|ENSG00000008130|O95544-3|NADK;ENSG00000008130|ENST00000341426|NADK;nc|ENSG00000008130|O95544-2|NADK ENST00000497615.1_1_1:1685693-1686165:-|nuORF ENST00000497615.1_1_1:1685693-1686165:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2806396484375 2 543.279315 1084.54408 0.86747 0.00047128 0.63423 0.00034456 1.5017 0.00081584 543.2798505927229 81.152 0.30637 74.976 74.827 75.133 -6.1757 26 17 2 0 0 0 0.010818 2 53213 53213;53339 78.149 38.192 1 14814000 78633 377 52694 53805 91328;91329 91328 0.005186170035358373 YLSQDTVSV 9 Unmodified _YLSQDTVSV_ 0 0 0 ENSG00000117984|ENST00000236671|CTSD ENSG00000117984|ENST00000236671|CTSD ENSG00000117984|ENST00000236671|CTSD MSMS AL20221201_MKP_PDAC_01 4 506.2531127929688 2 506.253297 1010.49204 NaN NaN NaN NaN NaN NaN NaN 51.489 1 45.84 45.34 46.34 -5.649 0 0 0 0.080768 1 32404 32404 48.346 25.197 1 78634 3345 52695 53806 91330 91330 -0.012785464102307742 YLSQKEIPF 9 Unmodified _YLSQKEIPF_ 0 0 0 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 ENSG00000156689|ENST00000287275|GLYATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.8040161132812 2 562.802957 1123.59136 0.83795 0.0004716 1.1937 0.00067182 2.0317 0.0011434 562.803726919858 72.921 0.35704 72.445 72.273 72.63 -0.47588 32 15 3 0 0 0 0.55144 1 39981 39981 4.3292 0 1 1323300 78635 6476 52696 53807 91331 91331 0.03450896274512161 YLSVEVAPL 9 Unmodified _YLSVEVAPL_ 0 0 0 ENST00000553497.1_1_14:70082246-70082456:+|nuORF ENST00000553497.1_1_14:70082246-70082456:+|nuORF ENST00000553497.1_1_14:70082246-70082456:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.779296875 2 495.778951 989.543348 0.64324 0.00031891 -1.0042 -0.00049786 -0.36096 -0.00017896 495.779194030177 75.774 0.41665 75.297 75.041 75.457 -0.47714 29 18 2 0 0 0 0.46577 1 41516 41516 9.3474 0 1 1388200 78636 15190 52697 53808 91332 91332 0.04815822354487409 YLSYWYCYIS 10 Unmodified _YLSYWYCYIS_ 0 0 0 REV__nc|ENSG00000127838|Q8N490-4|PNKD REV__nc|ENSG00000127838|Q8N490-4|PNKD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.8001708984375 2 680.799557 1359.58456 -0.39016 -0.00026562 0.61605 0.00041941 0.22589 0.00015379 680.8001799352271 77.088 0.31097 76.607 76.455 76.766 -0.48146 40 13 4 0 0 0 0.70951 1 42264 42264 1.8442 0 1 4220600 + 78637 29624 52698 53809 91333 91333 -0.08084784668358225 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7974853515625 2 532.79734 1063.58013 0.3188 0.00016986 -0.42446 -0.00022615 -0.10566 -5.6296E-05 532.7972977341793 92.145 0.41079 92.145 91.943 92.354 0 74 27 4 0 0 0 0.010877 2 50987 50887;50987 77.984 20.513 1 5593200 78638 9238;9236;2987 52699 53810 91334;91335 91335 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.7977905273438 2 532.79734 1063.58013 0.36026 0.00019194 0.01812 9.6542E-06 0.37838 0.0002016 532.7974253141176 92.636 0.40529 92.178 91.971 92.376 -0.45741 53 18 4 0 0 0 0.013472 2 50667 50564;50667 70.716 19.86 1 9707800 78639 9238;9236;2987 52699 53810 91336;91337 91337 0.05088074180366675 YLTAEILEL 9 Unmodified _YLTAEILEL_ 0 0 0 nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1;ENST00000506532.5_1_5:134705062-134724783:-|nuORF;ENST00000513210.5_1_5:134695623-134724711:-|nuORF;ENST00000360597.8_1_5:134681666-134724783:-|nuORF;ENSG00000184260|ENST00000331380|H2AC20;nc|ENSG00000288859|Q6FI13|H2AC18;ENSG00000188486|ENST00000530167|H2AX;ENSG00000184270|ENST00000331128|H2AC21;nc|ENSG00000246705|Q9BTM1-2|H2AJ;ENSG00000276368|ENST00000333151|H2AC14;ENSG00000180573|ENST00000377791|H2AC6;ENSG00000181218|ENST00000689584|H2AC25;ENSG00000196747|ENST00000358739|H2AC13;ENSG00000196787|ENST00000359193|H2AC11;ENSG00000196866|ENST00000341023|H2AC7;ENSG00000278677|ENST00000359611|H2AC17;ENSG00000278463|ENST00000615868|H2AC4;ENSG00000276903|ENST00000613174|H2AC16;ENSG00000277075|ENST00000303910|H2AC8;ENSG00000246705|ENST00000544848|H2AJ;ENSG00000274997|ENST00000377459|H2AC12;ENSG00000164508|ENST00000297012|H2AC1;ENST00000479986.1_1_6:27858584-27860837:-|nuORF nc|ENSG00000113648|O75367|MACROH2A1;ENSG00000184260|ENST00000331380|H2AC20;ENSG00000188486|ENST00000530167|H2AX ENSG00000188486|ENST00000530167|H2AX MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7974853515625 2 532.79734 1063.58013 0.40359 0.00021503 -0.2443 -0.00013016 0.15929 8.4869E-05 532.7972865475771 99.888 0.19299 93.713 93.611 93.804 -6.1757 37 14 3 0 0 0 0.013472 1 66617 66617 70.716 19.86 1 214710000 78640 9238;9236;2987 52699 53810 91338 91338 0.05088074180366675 YLTAEVLEL 9 Unmodified _YLTAEVLEL_ 0 0 0 ENST00000511203.1_1_4:100869836-100870579:-|nuORF;nc|ENSG00000105968|Q71UI9-4|H2AZ2;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF ENST00000511203.1_1_4:100869836-100870579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.78857421875 2 525.789515 1049.56448 0.45439 0.00023891 -0.26198 -0.00013775 0.19241 0.00010117 525.7892464107748 84.546 0.30971 84.546 84.409 84.719 0 33 14 3 0 0 0 0.07087 1 46847 46847 53.576 19.473 1 1596300 78641 14604 52700 53811 91339 91339 0.041677876633457345 YLTCRMQNC 9 Unmodified _YLTCRMQNC_ 0 0 0 nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 nc|ENSG00000108018|Q8WY21-3|SORCS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8308715820312 3 377.829645 1130.46711 NaN NaN NaN NaN NaN NaN NaN 64.178 1 64.178 63.678 64.678 0 0 0 0 0.84564 1 35789 35789 1.0715 0 1 78642 16109 52701 53812 91340 91340 -0.09290964080469166 YLTDLQVSL 9 Unmodified _YLTDLQVSL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2879028320312 2 526.28714 1050.55973 -0.64009 -0.00033687 1.9492 0.0010258 1.3091 0.00068897 526.2880609373707 78.196 0.23225 77.711 77.589 77.821 -0.48492 15 9 2 0 0 0 0.16226 1 42827 42827 26.884 8.7487 1 899780 78643 721 52702 53813 91341 91341 0.03646903520575506 YLTDLQVSL 9 Unmodified _YLTDLQVSL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MSMS AL20221201_MKP_PDAC_01 4 526.2869873046875 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 85.971 1 79.795 79.295 80.295 -6.1757 0 0 0 0.071041 1 56661 56661 50.855 23.971 1 78644 721 52702 53813 91342 91342 0.03646903520575506 YLTDLQVSL 9 Unmodified _YLTDLQVSL_ 0 0 0 ENSG00000050344|ENST00000056233|NFE2L3;ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENST00000588207.1_1_18:57637691-57638603:+|nuORF;NFE2L3|p.A591Kfs*14|1|0.04|ENSG00000050344|chr7:26185463-26185464|-/AAGTT|frameshift_variant ENSG00000050344|ENST00000056233|NFE2L3 ENSG00000050344|ENST00000056233|NFE2L3 MSMS AL20221201_MKP_PDAC_01 4 526.2872924804688 2 526.28714 1050.55973 NaN NaN NaN NaN NaN NaN NaN 86.151 1 79.975 79.475 80.475 -6.1757 0 0 0 0.01764 1 56788 56788 81.613 37.206 1 78645 721 52702 53813 91343 91343 0.03646903520575506 YLTGIIITP 9 Unmodified _YLTGIIITP_ 0 0 0 ENST00000287936.8_1_5:74650421-74650884:+|nuORF ENST00000287936.8_1_5:74650421-74650884:+|nuORF ENST00000287936.8_1_5:74650421-74650884:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 993.6084594726562 1 990.58701 989.579734 1.5606 0.0015459 -0.87275 -0.00086453 0.68788 0.00068141 990.5857446602491 100.83 0.22289 94.652 94.541 94.764 -6.1757 44 14 5 0 0 0 0.12841 1 67459 67459 30.225 13.283 1 1443500000 78646 11449 52703 53814 91344 91344 0.0845269925117691 YLTHDSPSV 9 Unmodified _YLTHDSPSV_ 0 0 0 ENSG00000124562|ENST00000244520|SNRPC ENSG00000124562|ENST00000244520|SNRPC ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.7455139160156 2 509.745639 1017.47673 -0.41639 -0.00021225 0.2857 0.00014563 -0.13069 -6.6619E-05 509.74580833692414 27.563 0.21065 27.563 27.427 27.638 0 18 9 3 0 0 0 0.013323 1 14185 14185 71.134 37.031 1 5038900 78647 3797 52704 53815 91345 91345 -0.03131413207427158 YLTHDSPSV 9 Unmodified _YLTHDSPSV_ 0 0 0 ENSG00000124562|ENST00000244520|SNRPC ENSG00000124562|ENST00000244520|SNRPC ENSG00000124562|ENST00000244520|SNRPC MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.2477416992188 2 509.745639 1017.47673 0.49798 0.00025384 0.29217 0.00014893 0.79015 0.00040277 509.7457527433909 31.818 0.19079 28.122 28.035 28.226 -3.6958 15 10 2 0 0 0 0.0083938 1 18079 18079 108 68.04 1 12595000 78648 3797 52704 53815 91346 91346 -0.03131413207427158 YLTHPRRLL 9 Unmodified _YLTHPRRLL_ 0 0 0 ENST00000570002.2_1_17:44344573-44344858:+|nuORF ENST00000570002.2_1_17:44344573-44344858:+|nuORF ENST00000570002.2_1_17:44344573-44344858:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.2358093261719 3 390.236497 1167.68766 NaN NaN NaN NaN NaN NaN NaN 77.732 1 77.25 76.75 77.75 -0.4826 0 0 0 0.86004 1 42556 42556 0.26902 0 1 78649 15466 52705 53816 91347 91347 0.11052508625130031 YLTKDGPFL 9 Unmodified _YLTKDGPFL_ 0 0 0 ENST00000477542.5_1_3:48415047-48423401:+|nuORF;nc|ENSG00000164049|Q6X9E4-3|FBXW12;ENSG00000164049|ENST00000296438|FBXW12 ENST00000477542.5_1_3:48415047-48423401:+|nuORF ENST00000477542.5_1_3:48415047-48423401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2862548828125 2 527.2844 1052.55425 0.63225 0.00033337 3.9184 0.0020661 4.5507 0.0023995 527.2866638551556 74.586 0.34848 74.11 73.954 74.302 -0.47588 21 14 2 0 0 0 0.39863 1 40847 40847 12.532 0 1 540400 78650 7121 52706 53817 91348 91348 0.030072247287534992 YLTKEDLRV 9 Unmodified _YLTKEDLRV_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.5490417480469 3 379.548518 1135.62372 0.9173 0.00034816 0.33255 0.00012622 1.2498 0.00047438 379.54883966591956 41.283 0.33997 36.675 36.432 36.772 -4.6079 37 20 3 0 0 0 0.085319 1 24720 24720 28.234 14.715 1 17150000 78651 9996 52707 53818 91349 91349 0.061336836774898984 YLTKEDLRV 9 Unmodified _YLTKEDLRV_ 0 0 0 ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF;ENSG00000197747|ENST00000368811|S100A10 ENST00000478574.5_1_1:151956596-151958706:-|nuORF ENST00000478574.5_1_1:151956596-151958706:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.548518 1135.62372 -0.3686 -0.0001399 1.4536 0.00055173 1.085 0.00041183 379.54872028296177 36.749 0.059216 36.5 36.45 36.51 -0.2497 -0.087815 0.0012283 NaN 28.234 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 2025800 78652 9996 52707 53818 0.061336836774898984 YLTKVDKL 8 Unmodified _YLTKVDKL_ 0 0 0 ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2946472167969 2 490.294768 978.574983 0.71842 0.00035224 -1.1487 -0.00056321 -0.4303 -0.00021097 490.2942952421338 36.552 0.26045 36.552 36.409 36.67 0 27 12 3 0 0 0 0.057997 1 19378 19378 129.77 29.973 1 8019100 78653 5318 52708 53819 91350 91350 0.08483815108411363 YLTLGLCPCL 10 Unmodified _YLTLGLCPCL_ 0 0 0 REV__nc|ENSG00000225362|P0C5K7|CT62 REV__nc|ENSG00000225362|P0C5K7|CT62 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.2565307617188 2 548.282489 1094.55042 0.48873 0.00026796 -1.0169 -0.00055755 -0.52817 -0.00028959 548.7831855802458 72.702 0.42101 72.702 72.564 72.985 0 47 20 3 0 0 0 0.23566 1 40633 40633 7.2892 0.93513 1 2437000 + 78654 29949 52709 53820 91351 91351 0.006930956390306164 YLTLSDSGD 9 Unmodified _YLTLSDSGD_ 0 0 0 ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1;nc|ENSG00000171302|Q8WVQ1-2|CANT1 ENSG00000171302|ENST00000392446|CANT1 ENSG00000171302|ENST00000392446|CANT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7199401855469 2 485.72183 969.429106 NaN NaN NaN NaN NaN NaN NaN 85.503 1 85.002 84.502 85.502 -0.5015 0 0 0 0.6032 1 46793 46793 12.532 6.7711 1 78655 8087 52710 53821 91352 91352 -0.05683112198278195 YLTNEGIQYL 10 Unmodified _YLTNEGIQYL_ 0 0 0 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;ENST00000440748.1_1_7:37415149-37415623:+|nuORF chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 607.3091430664062 2 607.308603 1212.60265 0.12363 7.5083E-05 -0.017298 -1.0505E-05 0.10633 6.4578E-05 607.3084134500762 67.48 0.28888 67.48 67.294 67.583 0 33 12 3 0 0 0 0.39779 1 37592 37592 21.747 7.8406 1 2399400 78656 117 52711 53822 91353 91353 0.004856735780094823 YLTNEGIQYL 10 Unmodified _YLTNEGIQYL_ 0 0 0 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;ENST00000440748.1_1_7:37415149-37415623:+|nuORF chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3068237304688 2 607.308603 1212.60265 NaN NaN NaN NaN NaN NaN NaN 67.938 1 67.456 66.956 67.956 -0.48218 0 0 0 0.19054 1 37122 37122 43.858 14.777 1 78657 117 52711 53822 91354 91354 0.004856735780094823 YLTNEGIQYL 10 Unmodified _YLTNEGIQYL_ 0 0 0 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;ENST00000440748.1_1_7:37415149-37415623:+|nuORF chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 chr6:34425221-34425583|179|20.53|0.0|20.97|-|ENST00000494077|RPS10-NUDT3,RPS10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.3074951171875 2 607.308603 1212.60265 NaN NaN NaN NaN NaN NaN NaN 68.115 1 67.633 67.133 68.133 -0.48218 0 0 0 0.90096 1 37223 37223 7.9102 0 1 78658 117 52711 53822 91355 91355 0.004856735780094823 YLTPTRTY 8 Unmodified _YLTPTRTY_ 0 0 0 REV__ENSG00000087842|ENST00000380420|PIR REV__ENSG00000087842|ENST00000380420|PIR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7666015625 2 507.766374 1013.5182 1.1419 0.00057983 -0.72722 -0.00036926 0.41471 0.00021058 507.76602620224315 42.753 0.34165 42.753 42.605 42.947 0 31 17 2 0 0 0 0.64853 1 23243 23243 21.747 4.8044 1 13081000 + 78659 17794 52712 53823 91356 91356 0.011977675518892283 YLTRGRCI 8 Unmodified _YLTRGRCI_ 0 0 0 ENST00000557743.2_1_14:89756667-89757087:-|nuORF ENST00000557743.2_1_14:89756667-89757087:-|nuORF ENST00000557743.2_1_14:89756667-89757087:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 491.2672424316406 2 491.268561 980.52257 NaN NaN NaN NaN NaN NaN NaN 101.78 1 95.601 95.101 96.101 -6.1757 0 0 0 0.77249 1 68316 68316 24.674 2.9272 1 78660 15264 52713 53824 91357 91357 0.03152953493827226 YLTTELWET 9 Unmodified _YLTTELWET_ 0 0 0 REV__ENST00000486860.5_1_7:87839356-87839401:-|nuORF REV__ENST00000486860.5_1_7:87839356-87839401:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 385.857177734375 3 385.857128 1154.54956 -0.54571 -0.00021057 1.1489 0.00044331 0.60319 0.00023275 385.8575664790645 15.68 0.15825 15.666 15.568 15.726 -0.014067 86 57 2 0 0 0 0.61381 1 7669 7669 0.23584 0.028987 1 624010 + 78661 27812 52714 53825 91358 91358 -0.021537042046475108 YLTTKEHL 8 Unmodified _YLTTKEHL_ 0 0 0 nc|ENSG00000144452|Q86UK0-2|ABCA12;ENSG00000144452|ENST00000272895|ABCA12 nc|ENSG00000144452|Q86UK0-2|ABCA12 nc|ENSG00000144452|Q86UK0-2|ABCA12 MSMS AL20221201_MKP_PDAC_01 4 502.775146484375 2 502.7742 1003.53385 NaN NaN NaN NaN NaN NaN NaN 97.401 1 91.225 90.725 91.725 -6.1757 0 0 0 0.85111 1 64553 64553 20.871 1.4322 1 78662 5611 52715 53826 91359 91359 0.032220540689422705 YLTVAMLMI 9 Unmodified _YLTVAMLMI_ 0 0 0 ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E ENSG00000171017|ENST00000306708|LRRC8E MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 527.7882080078125 2 527.787407 1053.56026 4.2861 0.0022622 -2.4166 -0.0012754 1.8695 0.00098671 527.7859093679374 99.151 0.25051 99.122 99.051 99.302 -0.028282 12 8 2 0 0 0 0.25297 1 55103 55103 19.439 4.8573 1 2796100 78663 8055 52716 53827 91360 91360 0.035622836443963024 YLTVNIEPL 9 Unmodified _YLTVNIEPL_ 0 0 0 ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 ENSG00000117154|ENST00000251296|IGSF21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8043212890625 2 531.297507 1060.58046 0.69514 0.00036933 0.07989 4.2445E-05 0.77503 0.00041177 531.2974250730751 69.586 0.49545 63.41 63.153 63.648 -6.1757 85 26 5 0 0 0 0.18465 1 45407 45407 24.674 0 1 106510000 78664 3285 52717 53828 91361 91361 0.05259493900234702 YLVADKYWK 9 Unmodified _YLVADKYWK_ 0 0 0 ENSG00000137509|ENST00000313010|PRCP;nc|ENSG00000137509|P42785-2|PRCP ENSG00000137509|ENST00000313010|PRCP ENSG00000137509|ENST00000313010|PRCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.322265625 2 593.318774 1184.623 3.6098 0.0021418 1.2295 0.00072947 4.8393 0.0028712 593.3195965162413 98.369 0.26157 98.341 98.17 98.432 -0.028282 21 9 3 0 0 0 0.32871 1 54659 54659 15.847 0 1 1848600 78665 4944 52718 53829 91362 91362 0.038068890284421286 YLVEIFDGRI 10 Unmodified _YLVEIFDGRI_ 0 0 0 ENST00000472593.1_1_3:183520964-183521276:+|nuORF ENST00000472593.1_1_3:183520964-183521276:+|nuORF ENST00000472593.1_1_3:183520964-183521276:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5780029296875 3 408.892284 1223.65502 0.20423 8.351E-05 0.28074 0.00011479 0.48497 0.0001983 408.89253905131346 40.544 0.22622 40.55 40.424 40.65 0.0050545 24 10 3 0 0 0 0.2399 1 21661 21661 0.69767 0 1 3978700 78666 13908 52719 53830 91363 91363 0.052142567116106875 YLVELTWA 8 Unmodified _YLVELTWA_ 0 0 0 REV__nc|ENSG00000012124|P20273-2|CD22 REV__nc|ENSG00000012124|P20273-2|CD22 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.5240478515625 1 994.52441 993.517133 0.40074 0.00039855 0.12819 0.00012749 0.52893 0.00052603 994.524765373982 84.748 0.20987 84.248 84.092 84.302 -0.49961 13 8 2 0 0 0 0.80143 1 46344 46344 5.7604 0 1 340770 + 78667 17062 52720 53831 91364 91364 0.020115531829901556 YLVGIADALI 10 Unmodified _YLVGIADALI_ 0 0 0 ENSG00000187612|ENST00000344514|OR5W2 ENSG00000187612|ENST00000344514|OR5W2 ENSG00000187612|ENST00000344514|OR5W2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.30810546875 2 524.307875 1046.6012 0.34009 0.00017831 -0.18474 -9.6861E-05 0.15534 8.1448E-05 524.307647394062 90.401 0.33752 89.907 89.758 90.095 -0.49457 31 15 3 0 0 0 0.46535 2 49392 49392;49491 18.135 2.2878 1 1721200 78668 9573 52721 53832 91365;91366 91365 0.07976084279880524 YLVHFSTNISF 11 Unmodified _YLVHFSTNISF_ 0 0 0 REV__ENSG00000144182|ENST00000651691|LIPT1 REV__ENSG00000144182|ENST00000651691|LIPT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 664.3357543945312 2 664.337695 1326.66084 0.50235 0.00033373 -2.2293 -0.001481 -1.7269 -0.0011472 664.3358062869205 49.181 0.2701 48.809 48.673 48.943 -0.37172 25 12 3 0 0 0 0.47965 1 26424 26424 17.443 3.0373 1 2385000 + 78669 20692 52722 53833 91367 91367 0.010573552232699512 YLVHFSTNISF 11 Unmodified _YLVHFSTNISF_ 0 0 0 REV__ENSG00000144182|ENST00000651691|LIPT1 REV__ENSG00000144182|ENST00000651691|LIPT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 664.337695 1326.66084 0.50235 0.00033373 -2.2293 -0.001481 -1.7269 -0.0011472 664.3358062869205 49.181 0.2701 48.809 48.673 48.943 -0.37172 0 0 NaN 17.443 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2385000 + 78670 20692 52722 53833 0.010573552232699512 YLVKDSFRV 9 Unmodified _YLVKDSFRV_ 0 0 0 REV__ENSG00000205363|ENST00000569673|INSYN1 REV__ENSG00000205363|ENST00000569673|INSYN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.2138061523438 3 376.213358 1125.61824 NaN NaN NaN NaN NaN NaN NaN 54.493 1 54.493 53.993 54.993 0 0 0 0 0.85261 1 30256 30256 1.1933 0 1 + 78671 24225 52723 53834 91368 91368 0.060460048857066795 YLVKDSFRV 9 Unmodified _YLVKDSFRV_ 0 0 0 REV__ENSG00000205363|ENST00000569673|INSYN1 REV__ENSG00000205363|ENST00000569673|INSYN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.2135009765625 3 376.213358 1125.61824 0.27959 0.00010518 0.82317 0.00030969 1.1028 0.00041487 376.21348134511993 54.699 0.39652 54.632 54.504 54.9 -0.066936 43 19 3 0 0 0 0.57757 2 29760 29657;29760 2.7352 1.8708 1 9878700 + 78672 24225 52723 53834 91369;91370 91370 0.060460048857066795 YLVKLAVAM 9 Unmodified _YLVKLAVAM_ 0 0 0 ENST00000436788.2_1_6:119234457-119238897:-|nuORF;nc|ENSG00000111877|Q9NXL9-3|MCM9;nc|ENSG00000111877|Q9NXL9-2|MCM9;ENSG00000111877|ENST00000619706|MCM9 ENST00000436788.2_1_6:119234457-119238897:-|nuORF ENST00000436788.2_1_6:119234457-119238897:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 504.3027954101562 2 504.301539 1006.58852 NaN NaN NaN NaN NaN NaN NaN 69.462 1 63.286 62.786 63.786 -6.1757 0 0 0 0.54015 1 45368 45368 14.582 2.9414 1 78673 2841 52724 53835 91371 91371 0.08549349616021118 YLVKMHLQMS 10 Unmodified _YLVKMHLQMS_ 0 0 0 ENST00000249923.7_1_11:14480097-14480193:-|nuORF ENST00000249923.7_1_11:14480097-14480193:-|nuORF ENST00000249923.7_1_11:14480097-14480193:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.3278198242188 2 625.325219 1248.63589 NaN NaN NaN NaN NaN NaN NaN 98.779 1 98.751 98.251 99.251 -0.028282 0 0 0 0.7417 1 54861 54861 14.838 1.7958 1 78674 11135 52725 53836 91372 91372 0.02151260824689416 YLVLPTIFSEE 11 Unmodified _YLVLPTIFSEE_ 0 0 0 REV__ENSG00000148123|ENST00000374874|PLPPR1 REV__ENSG00000148123|ENST00000374874|PLPPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 655.8482666015625 2 655.847561 1309.68057 -0.025797 -1.6919E-05 0.60445 0.00039643 0.57866 0.00037951 655.8476181667819 95.009 0.20324 95.009 94.869 95.072 0 25 14 2 0 0 0 0.74096 1 52473 52473 1.1933 0.79263 1 473520 + 78675 20928 52726 53837 91373 91373 0.03811686443395956 YLVLPTIFSEE 11 Unmodified _YLVLPTIFSEE_ 0 0 0 REV__ENSG00000148123|ENST00000374874|PLPPR1 REV__ENSG00000148123|ENST00000374874|PLPPR1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 655.847561 1309.68057 -0.025797 -1.6919E-05 0.60445 0.00039643 0.57866 0.00037951 655.8476181667819 95.009 0.20324 95.009 94.869 95.072 0 0.16974 -0.00078721 NaN 1.1933 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 473520 + 78676 20928 52726 53837 0.03811686443395956 YLVLPTIFSEE 11 Unmodified _YLVLPTIFSEE_ 0 0 0 REV__ENSG00000148123|ENST00000374874|PLPPR1 REV__ENSG00000148123|ENST00000374874|PLPPR1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 655.847561 1309.68057 2.3904 0.0015677 2.4188 0.0015863 4.8091 0.0031541 655.8484452378183 94.655 0.20571 94.669 94.54 94.746 0.014244 -0.16974 0.0015926 NaN 1.1933 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1241500 + 78677 20928 52726 53837 0.03811686443395956 YLVLYVMK 8 Unmodified _YLVLYVMK_ 0 0 0 REV__ENST00000393585.6_1_4:185550289-185550421:-|nuORF REV__ENST00000393585.6_1_4:185550289-185550421:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7960205078125 2 514.796089 1027.57763 NaN NaN NaN NaN NaN NaN NaN 92.287 1 92.287 91.787 92.787 0 0 0 0 0.97444 1 51030 51030 2.8892 0.58649 1 + 78678 26421 52727 53838 91374 91374 0.06493947241733622 YLVNDIYEL 9 Unmodified _YLVNDIYEL_ 0 0 0 ENSG00000111300|ENST00000261745|NAA25;nc|ENSG00000111300|Q14CX7-2|NAA25;ENST00000552527.5_1_12:112478245-112546577:-|nuORF ENSG00000111300|ENST00000261745|NAA25 ENSG00000111300|ENST00000261745|NAA25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2928466796875 2 571.292422 1140.57029 0.35697 0.00020393 0.17533 0.00010017 0.5323 0.0003041 571.2929279686055 81.435 0.23306 81.435 81.326 81.559 0 15 9 3 0 0 0 0.49272 1 45199 45199 7.9102 2.6795 1 479640 78679 2777 52728 53839 91375 91375 0.005628861749983116 YLVNVLTNGNM 11 Unmodified _YLVNVLTNGNM_ 0 0 0 REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF REV__ENST00000506586.1_1_5:93928514-93929327:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.83544921875 2 619.315906 1236.61726 0.59606 0.00036915 -3.884 -0.0024054 -3.288 -0.0020363 619.3129479250066 78.453 0.30898 78.505 78.368 78.677 0.052444 28 12 3 0 0 0 0.28226 1 43292 43292 17.113 1.8644 1 5409900 + 78680 28091 52729 53840 91376 91376 0.008414224544821991 YLVSFFVFGVY 11 Unmodified _YLVSFFVFGVY_ 0 0 0 REV__nc|ENSG00000170419|Q8TAG5|VSTM2A REV__nc|ENSG00000170419|Q8TAG5|VSTM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 670.8504638671875 2 670.849907 1339.68526 0.55608 0.00037304 -0.24455 -0.00016406 0.31152 0.00020898 670.8496260225494 72.004 0.23033 71.528 71.363 71.594 -0.47609 13 8 2 0 0 0 0.70701 1 39415 39415 3.5965 0 1 964450 + 78681 22480 52730 53841 91377 91377 0.029006153768250442 YLVSNVIEL 9 Unmodified _YLVSNVIEL_ 0 0 0 ENSG00000165916|ENST00000298852|PSMC3;ENST00000528362.1_1_11:47446139-47447800:-|nuORF;ENST00000531653.5_1_11:47445967-47447800:-|nuORF ENSG00000165916|ENST00000298852|PSMC3 ENSG00000165916|ENST00000298852|PSMC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2977905273438 2 525.297507 1048.58046 0.41633 0.0002187 0.17527 9.2069E-05 0.5916 0.00031077 525.297193334544 83.928 0.30843 83.429 83.241 83.55 -0.49961 22 12 3 0 0 0 0.2143 1 45911 45911 21.747 10.923 1 677940 78682 7406 52731 53842 91378 91378 0.05811493900228015 YLVSVEPA 8 Unmodified _YLVSVEPA_ 0 0 0 ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENST00000544576.1_1_8:145297127-145303835:+|nuORF ENSG00000179832|ENST00000326134|MROH1 ENSG00000179832|ENST00000326134|MROH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 439.2369995117188 2 439.236919 876.459284 0.49986 0.00021956 0.21989 9.6586E-05 0.71976 0.00031614 439.23690414023594 75.851 0.26741 75.374 75.19 75.457 -0.47714 16 11 2 0 0 0 0.77907 1 41549 41549 10.183 4.9527 1 590400 78683 8857 52732 53843 91379 91379 0.01611291257574976 YLVSVLTTLE 10 Unmodified _YLVSVLTTLE_ 0 0 0 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1;ENSG00000176463|ENST00000318445|SLCO3A1;ENST00000553653.5_1_15:92397138-92694297:+|nuORF nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 nc|ENSG00000176463|Q9UIG8-2|SLCO3A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 379.9007873535156 3 379.884907 1136.63289 1.6076 0.00061071 1.2113 0.00046014 2.8189 0.0010709 379.8852369544161 30.601 0.31573 27.104 26.895 27.211 -3.497 23 15 2 0 0 0 0.2182 1 17203 17203 26.021 4.4306 1 30197000 78684 8596 52733 53844 91380 91380 0.07004032243207803 YLVVAAEL 8 Unmodified _YLVVAAEL_ 0 0 0 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 REV__nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MSMS AL20221201_MKP_PDAC_01 4 439.2542114257812 2 439.255111 876.49567 NaN NaN NaN NaN NaN NaN NaN 93.234 1 87.058 86.558 87.558 -6.1757 0 0 0 0.95201 1 61700 61700 10.183 0 1 + 78685 22596 52734 53845 91381 91381 0.05248168154275845 YLVVELSKRT 10 Unmodified _YLVVELSKRT_ 0 0 0 REV__ENST00000480137.1_1_7:128450376-128461960:+|nuORF REV__ENST00000480137.1_1_7:128450376-128461960:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.3660278320312 2 604.355888 1206.69722 2.8498 0.0017223 -0.41798 -0.00025261 2.4318 0.0014697 604.3556241763325 97.151 1.7313 97.144 96.747 98.479 -0.007019 245 64 5 0 0 0 0.71123 1 54642 54642 1.6526 1.6526 1 177410000 + 78686 19622 52735 53846 91382 91382 0.10214232119983535 YLVVQQVV 8 Unmodified _YLVVQQVV_ 0 0 0 REV__ENSG00000047621|ENST00000261250|C12orf4 REV__ENSG00000047621|ENST00000261250|C12orf4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2823181152344 2 474.28166 946.548768 1.5629 0.00074125 0.64329 0.0003051 2.2062 0.0010463 474.28178062728864 104.63 0.20638 98.453 98.29 98.497 -6.1757 26 12 3 0 0 0 0.80975 1 69987 69987 0.79363 0 1 35837000 + 78687 17231 52736 53847 91383 91383 0.07335545936962262 YLVWDSVEL 9 Unmodified _YLVWDSVEL_ 0 0 0 REV__ENST00000488260.1_1_3:40351432-40353086:+|nuORF REV__ENST00000488260.1_1_3:40351432-40353086:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2850341796875 2 562.28714 1122.55973 1.1972 0.00067316 1.0259 0.00057685 2.2231 0.00125 562.2870544851314 93.806 1.0847 87.631 87.247 88.332 -6.1757 114 64 2 0 0 0 0.18465 1 62380 62380 24.674 9.8356 1 56092000 + 78688 27840 52737 53848 91384 91384 0.0033490352057015116 YLVYEFDKFWF 11 Unmodified _YLVYEFDKFWF_ 0 0 0 ENSG00000179387|ENST00000323570|ELMOD2;ENST00000502290.1_1_4:141463686-141471526:+|nuORF ENSG00000179387|ENST00000323570|ELMOD2 ENSG00000179387|ENST00000323570|ELMOD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.5863037109375 3 519.586861 1555.73875 0.21933 0.00011396 -0.28329 -0.0001472 -0.063968 -3.3237E-05 519.586685036792 26.121 0.29699 26.147 26.004 26.301 0.026951 36 13 4 0 0 0 0.74429 1 13622 13622 0.094841 0 1 62147000 78689 8833 52738 53849 91385 91385 -0.016886319113609716 YLWHQKTHTG 10 Unmodified _YLWHQKTHTG_ 0 0 0 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 ENSG00000142528|ENST00000270617|ZNF473 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2477416992188 3 424.215761 1269.62546 0.16005 6.7896E-05 2.5695 0.00109 2.7296 0.0011579 424.2178474110561 21.983 0.26965 21.997 21.84 22.109 0.013796 41 11 7 0 0 0 0.23922 1 11287 11287 3.8763 0 1 2203700 78690 5421 52739 53850 91386 91386 0.0014273748613504722 YLWKDLTL 8 Unmodified _YLWKDLTL_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1;ENST00000554084.5_1_14:100819360-100828234:-|nuORF nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 526.2949829101562 2 526.294768 1050.57498 0.18255 9.6078E-05 0.036192 1.9048E-05 0.21875 0.00011513 526.2943160108961 75.414 0.29739 75.46 75.307 75.605 0.045967 34 13 3 0 0 0 0.46677 1 41572 41572 37.974 7.7492 1 4756900 78691 5208 52740 53851 91387 91387 0.05171815108406008 YLWLIYCL 8 Unmodified _YLWLIYCL_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7901611328125 2 543.788264 1085.56198 0.21322 0.00011594 2.3593 0.0012829 2.5725 0.0013989 543.7893754447485 92.138 0.20652 92.138 92.075 92.281 0 19 13 2 0 0 0 0.70131 1 50952 50952 17.087 0 1 533410 78692 4537 52741 53852 91388 91388 0.022616607246845888 YLWLIYCL 8 Unmodified _YLWLIYCL_ 0 0 0 nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.79150390625 2 543.788264 1085.56198 0.19185 0.00010432 3.5556 0.0019335 3.7475 0.0020378 543.7899613728248 92.67 0.16586 92.212 92.169 92.334 -0.45741 9 6 2 0 0 0 0.61999 1 50685 50685 24.21 0 1 546140 78693 4537 52741 53852 91389 91389 0.022616607246845888 YLWLKFSLII 10 Unmodified _YLWLKFSLII_ 0 0 0 ENSG00000099282|ENST00000373290|TSPAN15;ENST00000478112.1_1_10:71211350-71243770:+|nuORF ENSG00000099282|ENST00000373290|TSPAN15 ENSG00000099282|ENST00000373290|TSPAN15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.599365234375 3 432.59692 1294.76893 1.8804 0.00081345 0.049271 2.1315E-05 1.9297 0.00083476 432.59683519374903 100.26 0.2804 100.22 100.12 100.4 -0.036301 29 9 5 0 0 0 0.72607 1 55677 55677 0 0 1 96105000 78694 1691 52742 53853 91390 91390 0.1333377154453501 YLWLPWLLWLY 11 Unmodified _YLWLPWLLWLY_ 0 0 0 REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF REV__ENST00000257940.6_1_12:56515445-56515574:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 783.8616333007812 2 783.431399 1564.84824 0.27775 0.0002176 0.84249 0.00066003 1.1202 0.00087763 783.432317947858 88.314 0.1922 88.367 88.328 88.52 0.053352 10 7 2 0 0 0 0.72952 1 49143 49143 1.4819 0.28856 1 18219000 + 78695 24935 52743 53854 91391 91391 0.08841418498673193 YLWNTVSKL 9 Unmodified _YLWNTVSKL_ 0 0 0 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.3103637695312 2 562.310949 1122.60735 1.0245 0.00057607 -0.30846 -0.00017345 0.716 0.00040262 562.3106650269465 67.084 0.3189 67.102 66.939 67.258 0.018028 41 15 4 0 0 0 0.040683 1 36795 36795 49.554 11.58 1 10091000 78696 4951 52744 53855 91392 91392 0.05094602511439916 YLWRFTHDPRY 11 Unmodified _YLWRFTHDPRY_ 0 0 0 ENSG00000198162|ENST00000356554|MAN1A2 ENSG00000198162|ENST00000356554|MAN1A2 ENSG00000198162|ENST00000356554|MAN1A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 777.38818359375 2 777.386042 1552.75753 0.30228 0.00023499 0.98845 0.0007684 1.2907 0.0010034 777.387008777975 84.823 0.7151 78.647 78.242 78.957 -6.1757 159 41 5 0 0 0 0.71341 1 56015 56015 2.9952 1.6657 1 257890000 78697 10056 52745 53856 91393 91393 0.0032634250308092305 YLWRIKQL 8 Unmodified _YLWRIKQL_ 0 0 0 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 ENSG00000121741|ENST00000610343|ZMYM2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7847900390625 2 560.337301 1118.66005 0.89221 0.00049994 -1.3778 -0.00077203 -0.48558 -0.00027209 560.3366042497778 73.978 0.22629 73.502 73.412 73.638 -0.47588 16 10 2 0 0 0 8.7369 1 40525 40525 11.114 0 1 738080 78698 3595 52746 53857 91394 91394 0.10546605364879724 YLWSLSLL 8 Unmodified _YLWSLSLL_ 0 0 0 REV__ENSG00000130055|ENST00000374382|GDPD2 REV__ENSG00000130055|ENST00000374382|GDPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.7823486328125 2 497.784036 993.553519 0.20307 0.00010108 -1.7971 -0.00089455 -1.594 -0.00079346 497.78290347185975 33.786 0.2088 33.815 33.672 33.881 0.028934 17 8 3 0 0 0 0.32412 1 17776 17776 52.693 3.0242 1 1533600 + 78699 19696 52747 53858 91395 91395 0.05648430079725131 YLWVGLLVF 9 Unmodified _YLWVGLLVF_ 0 0 0 REV__ENSG00000122375|ENST00000241891|OPN4 REV__ENSG00000122375|ENST00000241891|OPN4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.3287963867188 2 555.323328 1108.6321 0.20394 0.00011325 2.0856 0.0011582 2.2896 0.0012715 555.3256155103181 99.009 0.15408 92.834 92.74 92.894 -6.1757 23 9 3 0 0 0 0.1492 1 65774 65774 28.173 1.2896 1 271410000 + 78700 19339 52748 53859 91396 91396 0.08213282384826925 YLWWWGKS 8 Unmodified _YLWWWGKS_ 0 0 0 REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8553161621094 3 375.855394 1124.54435 0.69474 0.00026112 0.065578 2.4648E-05 0.76032 0.00028577 375.8552555345954 73.722 0.26752 73.246 73.144 73.412 -0.47588 16 12 2 0 0 0 0.80624 1 40373 40373 1.8442 0 1 1538800 + 78701 26301 52749 53860 91397 91397 -0.01293918485953327 YLWWWGKSKVY 11 Unmodified _YLWWWGKSKVY_ 0 0 0 REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 506.2638244628906 3 505.930962 1514.77106 NaN NaN NaN NaN NaN NaN NaN 55.937 1 55.869 55.369 56.369 -0.068737 0 0 0 0.93923 1 30410 30410 3.0723 0.63748 1 + 78702 26301 52750 53861 91398 91398 0.03426200282319769 YLWYWSNRFF 10 Unmodified _YLWYWSNRFF_ 0 0 0 REV__ENSG00000154485|ENST00000368808|MMP21 REV__ENSG00000154485|ENST00000368808|MMP21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 741.354736328125 2 741.35368 1480.69281 0.97294 0.00072129 1.3627 0.0010103 2.3357 0.0017316 741.3546858893578 50.934 0.32932 45.285 45.117 45.446 -5.649 41 19 3 0 0 0 0.39779 1 32096 32096 21.747 0.20967 1 39318000 + 78703 21231 52751 53862 91399 91399 -0.028312323029467734 YLYAFMSMC 9 Unmodified _YLYAFMSMC_ 0 0 0 nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 nc|ENSG00000177200|Q3L8U1-2|CHD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 376.8233337402344 3 376.823608 1127.449 0.69959 0.00026362 0.53245 0.00020064 1.232 0.00046426 376.8239131242298 73.889 0.27127 73.413 73.299 73.57 -0.47588 19 13 2 0 0 0 0.59218 1 40465 40465 0.96228 0 1 1158500 78704 8666 52752 53863 91400 91400 -0.10963099055175007 YLYAFQLR 8 Unmodified _YLYAFQLR_ 0 0 0 REV__ENST00000420022.3_1_19:50193401-50193710:+|nuORF REV__ENST00000420022.3_1_19:50193401-50193710:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.5325622558594 3 358.530798 1072.57057 0.86338 0.00030955 1.896 0.00067978 2.7594 0.00098933 358.53161831906823 23.61 0.49524 20.783 20.563 21.058 -2.8273 69 29 3 0 0 0 0.6895 1 12867 12867 13.906 0 1 11305000 + 78705 26826 52753 53864 91401 91401 0.037183506854944426 YLYCRRADF 9 Unmodified _YLYCRRADF_ 0 0 0 REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B REV__nc|ENSG00000167202|Q9UPU7-2|TBC1D2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.7894897460938 2 603.789858 1205.56516 0.017661 1.0663E-05 0.031715 1.9149E-05 0.049375 2.9812E-05 604.2915391003945 38.063 0.20213 37.792 37.66 37.862 -0.27133 17 9 2 0 0 0 0.53666 1 20037 20037 5.2307 5.2307 1 2236900 + 78706 22192 52754 53865 91402 91402 -0.02939696168618866 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2903442382812 2 576.290214 1150.56587 0.4321 0.00024901 0.2518 0.00014511 0.6839 0.00039412 576.2903133083483 58.408 0.24884 58.408 58.262 58.511 0 19 9 3 0 0 0 0.095405 1 32515 32515 34.102 12.356 1 1705500 78707 2696 52755 53866 91403 91403 -0.0033857824791994062 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7920532226562 2 576.290214 1150.56587 0.39699 0.00022878 1.1699 0.00067418 1.5669 0.00090297 576.2909949978063 58.905 0.28534 58.414 58.271 58.556 -0.49079 29 13 3 0 0 0 0.0086722 2 32008 32008;32110 88.954 54.552 1 5886600 78708 2696 52755 53866 91404;91405 91404 -0.0033857824791994062 YLYDLNHTL 9 Unmodified _YLYDLNHTL_ 0 0 0 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 ENSG00000110057|ENST00000227471|UNC93B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2907104492188 2 576.290214 1150.56587 0.59295 0.00034171 1.2776 0.00073626 1.8705 0.001078 576.2902113814397 65.212 0.41883 59.036 58.847 59.266 -6.1757 43 23 3 0 0 0 0.0014543 1 42292 42292 136.33 76.26 1 18701000 78709 2696 52755 53866 91406 91406 -0.0033857824791994062 YLYDRLLRI 9 Unmodified _YLYDRLLRI_ 0 0 0 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 ENSG00000101003|ENST00000262460|GINS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.2427978515625 3 408.908157 1223.70264 0.058511 2.3926E-05 1.2862 0.00052595 1.3447 0.00054988 408.9086717453724 67.679 0.32047 67.697 67.572 67.893 0.018028 30 15 3 0 0 0 0.14594 1 37204 37204 28.495 19.749 1 5299800 78710 1903 52756 53867 91407 91407 0.09973955702457715 YLYDRWLYRLF 11 Unmodified _YLYDRWLYRLF_ 0 0 0 REV__ENSG00000121764|ENST00000403528|HCRTR1 REV__ENSG00000121764|ENST00000403528|HCRTR1 MSMS AL20221201_MKP_PDAC_01 4 804.421630859375 2 804.422094 1606.82963 NaN NaN NaN NaN NaN NaN NaN 100.71 1 94.539 94.039 95.039 -6.1757 0 0 0 0.91154 1 67423 67423 6.7232 5.2413 1 + 78711 19308 52757 53868 91408 91408 0.050492568567960916 YLYDVPNDF 9 Unmodified _YLYDVPNDF_ 0 0 0 REV__ENST00000430496.1_1_9:127913263-127913512:+|nuORF REV__ENST00000430496.1_1_9:127913263-127913512:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.262451171875 2 573.261122 1144.50769 -0.039088 -2.2407E-05 -1.2258 -0.0007027 -1.2649 -0.00072511 573.2605640177742 71.212 0.24606 71.212 71.117 71.363 0 18 12 2 0 0 0 0.53666 1 39672 39672 5.2307 0 1 449980 + 78712 26966 52758 53869 91409 91409 -0.05878259893188442 YLYFFRLWHR 10 Unmodified _YLYFFRLWHR_ 0 0 0 REV__ENSG00000182087|ENST00000356663|TMEM259 REV__ENSG00000182087|ENST00000356663|TMEM259 MSMS AL20221201_MKP_PDAC_01 4 500.9329833984375 3 500.934818 1499.78262 NaN NaN NaN NaN NaN NaN NaN 16.957 1 14.37 13.87 14.87 -2.5866 0 0 0 0.9997 1 8825 8825 0.69767 0.24315 1 + 78713 23239 52759 53870 91410 91410 0.05272442096315899 YLYKSFIF 8 Unmodified _YLYKSFIF_ 0 0 0 REV__ENST00000507447.1_1_5:54960464-54965471:-|nuORF REV__ENST00000507447.1_1_5:54960464-54965471:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.797607421875 2 540.791861 1079.56917 0.032749 1.771E-05 0.98257 0.00053137 1.0153 0.00054908 540.7912487242809 55.059 0.34096 54.581 54.309 54.65 -0.47798 29 16 2 0 0 0 0.44122 1 29773 29773 40.449 9.812 1 2719000 + 78714 28104 52760 53871 91411 91411 0.03256716596752085 YLYPDITRL 9 Unmodified _YLYPDITRL_ 0 0 0 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.3154907226562 2 577.316232 1152.61791 0.19221 0.00011097 -0.29536 -0.00017051 -0.10315 -5.9548E-05 577.3156670758585 69.158 0.34238 68.677 68.485 68.828 -0.48071 29 14 3 0 0 0 0.085319 1 37816 37816 36.506 2.4038 1 1745400 78715 4321 52761 53872 91412 91412 0.047705851658292886 YLYPDITRL 9 Unmodified _YLYPDITRL_ 0 0 0 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 ENSG00000131389|ENST00000622186|SLC6A6 MSMS AL20221201_MKP_PDAC_01 4 577.31640625 2 577.316232 1152.61791 NaN NaN NaN NaN NaN NaN NaN 77.531 1 71.355 70.855 71.855 -6.1757 0 0 0 0.15231 1 50712 50712 36.506 4.2007 1 78716 4321 52761 53872 91413 91413 0.047705851658292886 YLYPSELFT 9 Unmodified _YLYPSELFT_ 0 0 0 ENSG00000102466|ENST00000376143|FGF14;nc|ENSG00000102466|Q92915-2|FGF14 ENSG00000102466|ENST00000376143|FGF14 ENSG00000102466|ENST00000376143|FGF14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7824096679688 2 566.78169 1131.54883 0.66203 0.00037522 -0.31423 -0.0001781 0.3478 0.00019713 566.7815169215287 85.45 0.28299 84.948 84.791 85.074 -0.5015 56 31 2 0 0 0 0.4887 1 46757 46757 12.532 0.89125 1 4181900 78717 2046 52762 53873 91414 91414 -0.011684988537354002 YLYPWSEL 8 Unmodified _YLYPWSEL_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 536.7658081054688 2 535.7633 1069.51205 -0.13487 -7.2258E-05 -0.74888 -0.00040122 -0.88375 -0.00047348 535.762871832456 32.341 0.45416 32.37 32.108 32.562 0.029743 50 19 4 0 0 0 0.74163 1 16890 16890 13.508 3.3245 1 15780000 + 78718 22523 52763 53874 91415 91415 -0.019927506796193484 YLYPWSEL 8 Unmodified _YLYPWSEL_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7656860351562 2 535.7633 1069.51205 1.0985 0.00058852 -1.1974 -0.00064155 -0.098966 -5.3022E-05 535.7630275557325 37.088 0.70052 32.804 32.371 33.072 -4.2835 163 42 5 0 0 0 0.72953 1 21525 21525 14.582 2.0501 1 701210000 + 78719 22523 52763 53874 91416 91416 -0.019927506796193484 YLYPYPCAYP 10 Unmodified _YLYPYPCAYP_ 0 0 0 ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.5250854492188 3 417.191454 1248.55253 0.23588 9.8409E-05 -0.65078 -0.0002715 -0.4149 -0.00017309 417.1913286680061 42.312 0.28863 42.312 42.179 42.468 0 39 13 4 0 0 0 0.65502 1 22892 22892 4.1895 0.86986 1 7409500 78720 12788 52764 53875 91417 91417 -0.061801523515214285 YLYPYPCAYP 10 Unmodified _YLYPYPCAYP_ 0 0 0 ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 417.191454 1248.55253 0.23588 9.8409E-05 -0.65078 -0.0002715 -0.4149 -0.00017309 417.1913286680061 42.312 0.28863 42.312 42.179 42.468 0 0.0137 8.4886E-05 NaN 4.1895 39 13 4 NaN NaN NaN NaN 0 NaN NaN 0 7409500 78721 12788 52764 53875 -0.061801523515214285 YLYPYPCAYP 10 Unmodified _YLYPYPCAYP_ 0 0 0 ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF ENST00000396191.5_1_7:32109982-32110375:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 417.191454 1248.55253 0.090322 3.7681E-05 -0.85708 -0.00035757 -0.76676 -0.00031989 417.1913446049449 42.591 0.22099 42.284 42.162 42.383 -0.30682 -0.0137 -0.00017332 NaN 4.1895 21 10 3 NaN NaN NaN NaN 0 NaN NaN 0 12186000 78722 12788 52764 53875 -0.061801523515214285 YLYQCYFFL 9 Unmodified _YLYQCYFFL_ 0 0 0 REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.29150390625 2 630.293911 1258.57327 0.17139 0.00010802 -3.8916 -0.0024529 -3.7202 -0.0023448 630.2916298288939 79.532 0.26733 79.532 79.418 79.686 0 16 10 2 0 0 0 0.49272 1 44170 44170 7.9102 1.187 1 482180 + 78723 26655 52765 53876 91418 91418 -0.045675619718394955 YLYQCYFFL 9 Unmodified _YLYQCYFFL_ 0 0 0 REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 630.293911 1258.57327 0.17139 0.00010802 -3.8916 -0.0024529 -3.7202 -0.0023448 630.2916298288939 79.532 0.26733 79.532 79.418 79.686 0 0.014425 0.0017139 NaN 7.9102 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 482180 + 78724 26655 52765 53876 -0.045675619718394955 YLYQCYFFL 9 Unmodified _YLYQCYFFL_ 0 0 0 REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 630.293911 1258.57327 0.69912 0.00044065 -5.2545 -0.0033119 -4.5554 -0.0028712 630.2905036575024 80.034 0.44372 79.544 79.312 79.755 -0.48932 0.026769 -4.1327E-06 NaN 7.9102 53 17 5 NaN NaN NaN NaN 0 NaN NaN 0 10943000 + 78725 26655 52765 53876 -0.045675619718394955 YLYQCYFFL 9 Unmodified _YLYQCYFFL_ 0 0 0 REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF REV__ENST00000406246.7_1_11:65421647-65421815:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 630.293911 1258.57327 0.33073 0.00020846 -5.3649 -0.0033814 -5.0341 -0.003173 630.2904482729101 79.421 0.56168 79.476 79.233 79.795 0.054977 -0.041194 -0.00014328 NaN 7.9102 65 21 5 NaN NaN NaN NaN 0 NaN NaN 0 70498000 + 78726 26655 52765 53876 -0.045675619718394955 YLYQLLAGF 9 Unmodified _YLYQLLAGF_ 0 0 0 REV__nc|ENSG00000114626|Q969K4-2|ABTB1 REV__nc|ENSG00000114626|Q969K4-2|ABTB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.299560546875 2 544.294768 1086.57498 -0.66139 -0.00035999 1.0492 0.00057109 0.38784 0.0002111 544.2933057596205 56.649 0.25824 56.164 56.071 56.329 -0.48554 47 14 4 0 0 0 0.18465 1 30762 30762 24.674 4.2203 1 20329000 + 78727 18922 52766 53877 91419 91419 0.03515815108403331 YLYQWNDDRC 10 Unmodified _YLYQWNDDRC_ 0 0 0 nc|ENSG00000154645|Q9H9P2-2|CHODL;nc|ENSG00000154645|Q9H9P2-3|CHODL;nc|ENSG00000154645|Q9H9P2-4|CHODL;ENSG00000154645|ENST00000299295|CHODL nc|ENSG00000154645|Q9H9P2-2|CHODL nc|ENSG00000154645|Q9H9P2-2|CHODL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 688.291748046875 2 688.290419 1374.56629 0.36478 0.00025108 1.5492 0.0010663 1.914 0.0013174 688.291801746094 57.259 0.21493 57.259 57.156 57.371 0 16 9 2 0 0 0 0.69377 1 31873 31873 3.5965 0.60125 1 2337800 78728 6339 52767 53878 91420 91420 -0.10601526590380672 YLYRALLL 8 Unmodified _YLYRALLL_ 0 0 0 REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF REV__ENST00000520482.1_1_8:142168222-142185717:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.8135375976562 2 512.813128 1023.6117 1.0138 0.00051987 0.085707 4.3951E-05 1.0995 0.00056382 512.8131735780402 94.052 1.2067 87.877 87.303 88.509 -6.1757 228 70 4 0 0 0 0.35156 1 62672 62672 49.669 0 1 244340000 + 78729 18417 52768 53879 91421 91421 0.10084111724984268 YLYRMKAL 8 Unmodified _YLYRMKAL_ 0 0 0 nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43;nc|nan|Q9BWL3-3|C1orf43 nc|nan|Q9BWL3-2|C1orf43 nc|nan|Q9BWL3-2|C1orf43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.5360412597656 3 353.200284 1056.57902 0.016219 5.7287E-06 3.6072 0.0012741 3.6234 0.0012798 353.20158058596036 21.024 0.13457 21.035 20.943 21.078 0.010553 15 10 2 0 0 0 0.77186 1 10742 10742 10.824 0 1 2767500 78730 5533 52769 53880 91422 91422 0.05299581330473302 YLYRNWSTCL 10 Unmodified _YLYRNWSTCL_ 0 0 0 REV__ENSG00000130349|ENST00000311381|MTRES1 REV__ENSG00000130349|ENST00000311381|MTRES1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2125244140625 3 440.213141 1317.61759 NaN NaN NaN NaN NaN NaN NaN 14.735 1 14.735 14.235 15.235 0 0 0 0 1.0019 1 7032 7032 0.15932 0.064481 1 + 78731 19717 52770 53881 91423 91423 -0.028511578256257053 YLYSKWIP 8 Unmodified _YLYSKWIP_ 0 0 0 REV__nc|ENSG00000106069|P52757-8|CHN2 REV__nc|ENSG00000106069|P52757-8|CHN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 534.7813720703125 2 535.289485 1068.56442 1.1502 0.0006157 1.5767 0.00084399 2.7269 0.0014597 535.2891018576526 37.624 0.36626 33.255 33.071 33.437 -4.3689 49 21 4 0 0 0 8.7369 1 22121 22121 13.508 4.1604 1 86166000 + 78732 18486 52771 53882 91424 91424 0.032878324539979076 YLYTGDPLGPG 11 Unmodified _YLYTGDPLGPG_ 0 0 0 ENST00000464431.1_1_3:127395028-127395444:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF;ENST00000483857.5_1_3:127391815-127395444:+|nuORF ENST00000464431.1_1_3:127395028-127395444:+|nuORF ENST00000464431.1_1_3:127395028-127395444:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.781982421875 2 576.782222 1151.54989 0.2489 0.00014356 -0.95226 -0.00054925 -0.70336 -0.00040568 576.7815427483275 62.063 0.27701 62.063 61.929 62.206 0 23 11 3 0 0 0 0.46578 1 34595 34595 18.146 0.011366 1 3201900 78733 13718 52772 53883 91425 91425 -0.019822844848249588 YLYTGDPLGPG 11 Unmodified _YLYTGDPLGPG_ 0 0 0 ENST00000464431.1_1_3:127395028-127395444:+|nuORF;ENST00000479280.5_1_3:127391883-127395444:+|nuORF;ENST00000483857.5_1_3:127391815-127395444:+|nuORF ENST00000464431.1_1_3:127395028-127395444:+|nuORF ENST00000464431.1_1_3:127395028-127395444:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.7811889648438 2 576.782222 1151.54989 0.7263 0.00041892 -1.426 -0.00082248 -0.69968 -0.00040356 576.7812073101366 62.559 0.2275 62.072 61.956 62.183 -0.48764 23 10 3 0 0 0 0.35243 1 34099 34099 24.021 0.87215 1 3801600 78734 13718 52772 53883 91426 91426 -0.019822844848249588 YLYVRAHGIQQ 11 Unmodified _YLYVRAHGIQQ_ 0 0 0 ENST00000357802.6_1_22:42973094-42978007:-|nuORF ENST00000357802.6_1_22:42973094-42978007:-|nuORF ENST00000357802.6_1_22:42973094-42978007:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 674.3631591796875 2 674.362036 1346.70952 NaN NaN NaN NaN NaN NaN NaN 92.9 1 86.724 86.224 87.224 -6.1757 0 0 0 0.93224 1 61454 61454 5.7319 0.43497 1 78735 12117 52773 53884 91427 91427 0.050032685830274204 YLYVSFYFIY 10 Unmodified _YLYVSFYFIY_ 0 0 0 REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF REV__ENST00000373548.7_1_1:32798641-32798926:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 689.344970703125 2 689.341915 1376.66928 NaN NaN NaN NaN NaN NaN NaN 51.916 1 46.181 45.681 46.681 -5.7345 0 0 0 0.3517 1 32717 32717 34.102 1.3168 1 + 78736 26151 52774 53885 91428 91428 -0.0039909086010538886 YLYWIDCCEYP 11 Unmodified _YLYWIDCCEYP_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.8706359863281 3 489.870163 1466.58866 0.38823 0.00019018 0.09447 4.6278E-05 0.4827 0.00023646 489.8701384199545 59.903 0.31276 59.412 59.253 59.566 -0.49079 54 15 5 0 0 0 0.74429 2 32565 32565;32670 0.094841 0 1 8943600 78737 7792 52775 53886 91429;91430 91429 -0.12597063236967188 YLYWIDCCEYP 11 Unmodified _YLYWIDCCEYP_ 0 0 0 ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B ENSG00000168702|ENST00000389484|LRP1B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 489.870163 1466.58866 0.55766 0.00027318 1.4467 0.0007087 2.0044 0.00098188 489.87056250264595 59.542 0.13399 59.489 59.42 59.554 -0.053062 0.038334 0.0014559 NaN 0.094841 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1967000 78738 7792 52775 53886 -0.12597063236967188 YLYWIYNVTY 10 Unmodified _YLYWIYNVTY_ 0 0 0 REV__ENST00000549537.6_2_12:112371794-112450827:-|nuORF REV__ENST00000549537.6_2_12:112371794-112450827:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 699.3446655273438 2 699.342446 1396.67034 NaN NaN NaN NaN NaN NaN NaN 67.024 1 67.024 66.524 67.524 0 0 0 0 0.94014 1 37380 37380 6.2058 2.9245 1 + 78739 24008 52776 53887 91431 91431 -0.012128764912176848 YLYYEMYGS 9 Unmodified _YLYYEMYGS_ 0 0 0 REV__ENSG00000132823|ENST00000255174|OSER1 REV__ENSG00000132823|ENST00000255174|OSER1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.8346862792969 3 396.835447 1187.48451 -0.19378 -7.69E-05 -1.7176 -0.00068162 -1.9114 -0.00075852 396.83463779523765 52.27 0.24944 52.27 52.152 52.402 0 14 10 2 0 0 0 0.58145 1 28960 28960 2.4985 1.0166 1 1281000 + 78740 19882 52777 53888 91432 91432 -0.10173022002163634 YLYYSKMEAV 10 Unmodified _YLYYSKMEAV_ 0 0 0 REV__nc|ENSG00000126217|O15068-8|MCF2L REV__nc|ENSG00000126217|O15068-8|MCF2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.8751220703125 3 422.874014 1265.60021 -0.56242 -0.00023783 2.1742 0.00091941 1.6118 0.00068158 422.87487136941513 18.143 0.087254 18.157 18.131 18.219 0.013865 13 12 2 0 0 0 0.72196 1 9093 9093 0.15932 0.01943 1 416510 + 78741 29620 52778 53889 91433 91433 -0.021964981513292514 YLYYSKMEAV 10 Unmodified _YLYYSKMEAV_ 0 0 0 REV__nc|ENSG00000126217|O15068-8|MCF2L REV__nc|ENSG00000126217|O15068-8|MCF2L MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 422.874014 1265.60021 -0.56242 -0.00023783 2.1742 0.00091941 1.6118 0.00068158 422.87487136941513 18.143 0.087254 18.157 18.131 18.219 0.013865 0 0 NaN 0.15932 13 12 2 NaN NaN NaN NaN 0 NaN NaN 0 416510 + 78742 29620 52778 53889 -0.021964981513292514 YMAELIERL 9 Oxidation (M) _YM(Oxidation (M))AELIERL_ YM(1)AELIERL YM(51)AELIERL 0 0 1 ENSG00000112312|ENST00000230056|GMNN ENSG00000112312|ENST00000230056|GMNN ENSG00000112312|ENST00000230056|GMNN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.298583984375 2 577.299724 1152.5849 0.42947 0.00024793 -0.88735 -0.00051227 -0.45788 -0.00026434 577.2989207076582 56.878 0.31625 56.878 56.705 57.022 0 30 13 3 0 0 0 0.037253 1 31624 31624 51.415 32.158 1 3414800 78743 2883 52779 53890 91434 91434 502 0.014706350514870792 YMAGAFTTGLY 11 Unmodified _YMAGAFTTGLY_ 0 0 0 REV__ENSG00000124140|ENST00000243964|SLC12A5 REV__ENSG00000124140|ENST00000243964|SLC12A5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7803344726562 2 597.778625 1193.5427 -0.7701 -0.00046035 4.1262 0.0024665 3.356 0.0020062 597.7813901083124 27.794 0.20297 27.794 27.721 27.924 0 15 9 2 0 0 0 0.71341 1 14363 14363 2.9952 0.93549 1 1197600 + 78744 19417 52780 53891 91435 91435 -0.04633340356872395 YMAHIAPEV 9 Oxidation (M) _YM(Oxidation (M))AHIAPEV_ YM(1)AHIAPEV YM(64)AHIAPEV 0 0 1 ENSG00000188761|ENST00000393316|BCL2L15 ENSG00000188761|ENST00000393316|BCL2L15 ENSG00000188761|ENST00000393316|BCL2L15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7523193359375 2 523.75241 1045.49027 0.55151 0.00028885 0.44345 0.00023226 0.99496 0.00052111 523.7526218417987 37.14 0.29881 37.14 36.997 37.296 0 37 14 3 0 0 0 0.019979 1 19709 19709 63.563 29.46 1 11306000 78745 9692 52781 53892 91436 91436 1565 -0.030658786998628784 YMAVLCLLHY 10 Unmodified _YMAVLCLLHY_ 0 0 0 REV__ENSG00000135144|ENST00000548759|DTX1 REV__ENSG00000135144|ENST00000548759|DTX1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.208740234375 3 409.208451 1224.60352 NaN NaN NaN NaN NaN NaN NaN 17.618 1 17.618 17.118 18.118 0 0 0 0 0.98914 1 8695 8695 0.77653 0.27058 1 + 78746 20040 52782 53893 91437 91437 0.0002047342170499178 YMERWFMRHKY 11 Unmodified _YMERWFMRHKY_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.8883666992188 2 823.88958 1645.76461 NaN NaN NaN NaN NaN NaN NaN 88.788 1 88.836 88.336 89.336 0.047852 0 0 0 0.94301 1 49397 49397 0.35063 0.043601 1 + 78747 24019 52783 53894 91438 91438 -0.032443842123711875 YMERWFMRHKY 11 Unmodified _YMERWFMRHKY_ 0 0 0 REV__ENSG00000198408|ENST00000361464|OGA REV__ENSG00000198408|ENST00000361464|OGA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 823.889892578125 2 823.88958 1645.76461 NaN NaN NaN NaN NaN NaN NaN 99.127 1 99.099 98.599 99.599 -0.028282 0 0 0 0.9435 1 55057 55057 0 0 1 + 78748 24019 52783 53894 91439 91439 -0.032443842123711875 YMFFLSGYF 9 Unmodified _YMFFLSGYF_ 0 0 0 REV__ENSG00000232382|ENST00000642057|OR5K1 REV__ENSG00000232382|ENST00000642057|OR5K1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.269775390625 2 587.767529 1173.5205 0.75013 0.0004409 1.3941 0.00081938 2.1442 0.0012603 588.2717161723498 80.272 0.38483 74.097 73.893 74.278 -6.1757 35 22 2 0 0 0 0.18465 1 52725 52725 24.674 0.65332 1 13916000 + 78749 24411 52784 53895 91440 91440 -0.059315200346645724 YMFRTQHLCN 10 Unmodified _YMFRTQHLCN_ 0 0 0 ENST00000272797.8_1_2:170592417-170592516:+|nuORF ENST00000272797.8_1_2:170592417-170592516:+|nuORF ENST00000272797.8_1_2:170592417-170592516:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 656.7999267578125 2 656.7999 1311.58525 NaN NaN NaN NaN NaN NaN NaN 15.808 1 15.813 15.313 16.313 0.0050564 0 0 0 1.0061 1 7896 7896 0 0 1 78750 11375 52785 53896 91441 91441 -0.05808268500277336 YMHEGFERA 9 Unmodified _YMHEGFERA_ 0 0 0 nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1 nc|ENSG00000169604|Q9H6X2-3|ANTXR1 nc|ENSG00000169604|Q9H6X2-3|ANTXR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.25048828125 2 570.250566 1138.48658 0.34678 0.00019775 0.19377 0.0001105 0.54055 0.00030825 570.2503637735105 87.476 0.34775 87.476 87.268 87.616 0 23 15 2 0 0 0 0.59218 1 48420 48420 1.8442 0 1 600550 78751 7890 52786 53897 91442 91442 -0.07712548473682546 YMHLNRLEI 9 Unmodified _YMHLNRLEI_ 0 0 0 ENSG00000131374|ENST00000696125|TBC1D5;nc|ENSG00000131374|Q92609|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8772277832031 3 396.877981 1187.61211 0.31911 0.00012665 -1.9901 -0.00078981 -1.671 -0.00066317 396.8772788614569 12.024 0.13766 9.5418 9.4935 9.6312 -2.482 39 31 2 0 0 0 0.54213 1 6066 6066 4.897 0.36815 1 1511600 78752 4318 52787 53898 91443 91443 0.02581163382546947 YMIDNVILLI 10 Oxidation (M) _YM(Oxidation (M))IDNVILLI_ YM(1)IDNVILLI YM(54)IDNVILLI 0 0 1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8424682617188 2 611.841225 1221.6679 0.73839 0.00045178 0.33027 0.00020207 1.0687 0.00065385 612.3422973735302 101.56 0.098984 95.384 95.33 95.429 -6.1757 10 4 3 0 0 0 0.067957 1 68159 68159 53.833 23.992 1 12116000 78753 6670 52788 53899 91444 91444 1166 0.06592951779498435 YMIRCSWPM 9 Unmodified _YMIRCSWPM_ 0 0 0 REV__ENST00000228425.10_2_12:27842059-27842116:+|nuORF REV__ENST00000228425.10_2_12:27842059-27842116:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 396.1782531738281 3 396.178386 1185.51333 -0.31722 -0.00012568 -0.46095 -0.00018262 -0.77818 -0.0003083 396.1780948140411 20.771 0.49542 20.799 20.438 20.934 0.028357 36 23 2 0 0 0 0.61256 1 10387 10387 0.26902 0 1 545430 + 78754 24799 52789 53900 91445 91445 -0.07200899178383224 YMKAAYLSMF 10 Unmodified _YMKAAYLSMF_ 0 0 0 ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A ENSG00000085831|ENST00000680483|TTC39A ENSG00000085831|ENST00000680483|TTC39A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.2998046875 2 612.79322 1223.57189 0.11834 7.2518E-05 -2.4081 -0.0014757 -2.2898 -0.0014032 612.7913420814826 53.997 0.11863 53.931 53.863 53.981 -0.066936 6 5 2 0 0 0 0.22941 1 29341 29341 13.906 0.86358 1 799150 78755 1419 52790 53901 91446 91446 -0.030955193322824925 YMKASAPYNH 10 Unmodified _YMKASAPYNH_ 0 0 0 ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;ENST00000537641.5_1_11:61183575-61183878:-|nuORF ENSG00000149532|ENST00000439958|CPSF7 ENSG00000149532|ENST00000439958|CPSF7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.518310546875 3 394.518453 1180.53353 0.23823 9.3986E-05 -0.41136 -0.00016229 -0.17313 -6.8304E-05 394.51815776302413 25.963 0.40431 23.012 22.857 23.261 -2.9511 41 26 2 0 0 0 0.68074 1 14318 14318 5.0475 0.15051 1 24726000 78756 6017 52791 53902 91447 91447 -0.04951688922574249 YMKHTRLF 8 Unmodified _YMKHTRLF_ 0 0 0 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.2924194335938 2 548.292037 1094.56952 0.53015 0.00029068 -0.083779 -4.5935E-05 0.44638 0.00024474 548.2919299295415 35.382 0.27302 31.287 31.192 31.465 -4.0951 30 16 2 0 0 0 0.074014 1 20506 20506 120.45 23.376 1 9077500 78757 8706 52792 53903 91448 91448 0.02601813044930168 YMKHTRLF 8 Oxidation (M) _YM(Oxidation (M))KHTRLF_ YM(1)KHTRLF YM(61)KHTRLF 0 0 1 nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF nc|ENSG00000177731|Q13045-3|FLII nc|ENSG00000177731|Q13045-3|FLII MSMS AL20221201_MKP_PDAC_01 4 556.2898559570312 2 556.289494 1110.56443 NaN NaN NaN NaN NaN NaN NaN 27.599 1 24.563 24.063 25.063 -3.0365 0 0 0 0.32286 1 15306 15306 61.357 43.222 1 78758 8706 52792 53904 91449 91449 1471 0.01357509182321337 YMKIIEKSGYQ 11 Unmodified _YMKIIEKSGYQ_ 0 0 0 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2;ENSG00000129354|ENST00000250244|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 nc|ENSG00000129354|Q9Y6Q5-2|AP1M2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.9045104980469 3 453.904084 1358.69042 NaN NaN NaN NaN NaN NaN NaN 19.526 1 19.533 19.033 20.033 0.0078487 0 0 0 0.94293 1 9935 9935 0.40827 0.041592 1 78759 4133 52793 53905 91450 91450 0.025425511771345555 YMKTKFFYYYF 11 Unmodified _YMKTKFFYYYF_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.2554321289062 3 534.256346 1599.74721 0.32304 0.00017259 -0.86942 -0.00046449 -0.54638 -0.0002919 534.5902050903719 96.62 0.22487 96.315 96.189 96.414 -0.30473 24 12 2 0 0 0 0.74429 1 52742 52742 0.094841 0 1 462020 + 78760 17602 52794 53906 91451 91451 -0.028674012663714166 YMKWWRFIIF 10 Unmodified _YMKWWRFIIF_ 0 0 0 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1;REV__nc|ENSG00000138688|Q2LD37-5|BLTP1 REV__nc|ENSG00000138688|Q2LD37-6|BLTP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 745.3917846679688 2 745.394293 1488.77403 NaN NaN NaN NaN NaN NaN NaN 99.667 1 99.63 99.13 100.13 -0.036301 0 0 0 0.7417 1 55353 55353 14.838 2.5976 1 + 78761 29660;29661 52795 53907 91452 91452 0.04919752135469935 YMLDSFHY 8 Unmodified _YMLDSFHY_ 0 0 0 REV__ENSG00000103657|ENST00000443617|HERC1 REV__ENSG00000103657|ENST00000443617|HERC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.1568603515625 3 359.156632 1074.44807 0.42895 0.00015406 -2.1851 -0.00078478 -1.7561 -0.00063072 359.1558797338356 42.378 0.42646 42.378 42.199 42.625 0 34 20 2 0 0 0 0.80143 1 22916 22916 3.9444 0 1 2592000 + 78762 18320 52796 53908 91453 91453 -0.08617854108206302 YMLFKLMEF 9 Unmodified _YMLFKLMEF_ 0 0 0 REV__nc|ENSG00000136111|O60343-4|TBC1D4 REV__nc|ENSG00000136111|O60343-4|TBC1D4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8721618652344 3 407.873068 1220.59737 -0.12418 -5.0651E-05 -2.2331 -0.00091082 -2.3573 -0.00096147 407.8721656292582 20.144 0.13934 20.154 20.069 20.208 0.010553 8 6 2 0 0 0 0.58466 1 10276 10276 1.1933 0.12188 1 370960 + 78763 20137 52797 53909 91454 91454 -0.00410044809837018 YMLHETVAL 9 Unmodified _YMLHETVAL_ 0 0 0 ENSG00000177710|ENST00000382435|SLC35G5 ENSG00000177710|ENST00000382435|SLC35G5 ENSG00000177710|ENST00000382435|SLC35G5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.8042602539062 2 538.775885 1075.53722 0.7309 0.00039379 -0.3635 -0.00019585 0.3674 0.00019795 539.2754074788913 47.603 0.085857 47.603 47.558 47.644 0 5 3 2 0 0 0 0.19613 1 26093 26093 12.532 0.89125 1 945110 78764 8704 52798 53910 91455 91455 0.002469808513069438 YMLKAIYM 8 Unmodified _YMLKAIYM_ 0 0 0 REV__ENST00000341068.7_1_2:112630936-112630966:-|nuORF REV__ENST00000341068.7_1_2:112630936-112630966:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7649536132812 2 516.766474 1031.5184 1.0509 0.00054307 -3.8574 -0.0019934 -2.8065 -0.0014503 516.7646584485249 21.817 0.21953 19.082 18.955 19.175 -2.7348 18 11 2 0 0 0 0.78849 1 11755 11755 9.3474 0 1 1057400 + 78765 25701 52799 53911 91456 91456 0.003897279558941591 YMQRCTNEL 9 Unmodified _YMQRCTNEL_ 0 0 0 ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL ENSG00000118898|ENST00000345988|PPL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2617797851562 2 579.257533 1156.50051 NaN NaN NaN NaN NaN NaN NaN 23.557 1 23.557 23.057 24.057 0 0 0 0 0.85798 1 12011 12011 0.52476 0 1 78766 3399 52800 53912 91457 91457 -0.07147639036907094 YMQYWYHNK 9 Unmodified _YMQYWYHNK_ 0 0 0 REV__ENSG00000077147|ENST00000371142|TM9SF3 REV__ENSG00000077147|ENST00000371142|TM9SF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 666.7941284179688 2 666.79514 1331.57573 NaN NaN NaN NaN NaN NaN NaN 19.612 1 19.612 19.112 20.112 0 0 0 0 0.85798 1 9819 9819 0.52476 0.066424 1 + 78767 17602 52801 53913 91458 91458 -0.07679713514176001 YMRHGDLNRF 10 Unmodified _YMRHGDLNRF_ 0 0 0 ENST00000530298.5_1_1:156845639-156851431:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1;CEL-NTRK1|2|fusion;CEL-NTRK1|1|fusion ENST00000530298.5_1_1:156845639-156851431:+|nuORF ENST00000530298.5_1_1:156845639-156851431:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 436.8801879882812 3 436.880384 1307.61932 NaN NaN NaN NaN NaN NaN NaN 15.795 1 15.8 15.3 16.3 0.0050564 0 0 0 0.97044 1 7889 7889 3.8763 0.28927 1 78768 58 52802 53914 91459 91459 -0.022181040170607957 YMRNDYDWQF 10 Unmodified _YMRNDYDWQF_ 0 0 0 REV__ENST00000457130.2_1_X:143922603-143922738:+|nuORF REV__ENST00000457130.2_1_X:143922603-143922738:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 479.86767578125 3 479.867922 1436.58194 0.69563 0.00033381 -1.757 -0.00084312 -1.0613 -0.0005093 479.8671122413643 49.34 0.2224 48.968 48.82 49.043 -0.37172 34 10 5 0 0 0 0.72044 1 26498 26498 0.62683 0.17231 1 3772500 + 78769 27263 52803 53915 91460 91460 -0.11889240073332985 YMRQAGEVTY 10 Unmodified _YMRQAGEVTY_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.2853393554688 2 609.284605 1216.55466 -0.79176 -0.0004824 1.0969 0.00066832 0.30513 0.00018591 609.2854013194725 28.285 0.1409 28.285 28.189 28.33 0 13 6 3 0 0 0 0.36296 1 14609 14609 23.79 0 1 1905000 78770 3215 52804 53916 91461 91461 -0.044957236136951906 YMRQAGEVTY 10 Unmodified _YMRQAGEVTY_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 609.284605 1216.55466 -0.79176 -0.0004824 1.0969 0.00066832 0.30513 0.00018591 609.2854013194725 28.285 0.1409 28.285 28.189 28.33 0 -0.0081816 7.3905E-06 NaN 23.79 13 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1905000 78771 3215 52804 53916 -0.044957236136951906 YMRQAGEVTY 10 Unmodified _YMRQAGEVTY_ 0 0 0 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 ENSG00000116350|ENST00000373795|SRSF4 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 609.284605 1216.55466 0.65839 0.00040115 1.0443 0.00063628 1.7027 0.0010374 609.2850438864008 31.997 0.068653 28.302 28.271 28.339 -3.6958 0.0081816 -5.6673E-05 NaN 23.79 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 5927700 78772 3215 52804 53916 -0.044957236136951906 YMSEKDPML 9 Unmodified _YMSEKDPML_ 0 0 0 REV__nc|ENSG00000104381|Q8TB36-2|GDAP1 REV__nc|ENSG00000104381|Q8TB36-2|GDAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2486572265625 2 557.251385 1112.48822 NaN NaN NaN NaN NaN NaN NaN 73.911 1 73.435 72.935 73.935 -0.47588 0 0 0 0.83049 1 40452 40452 3.9444 0.3479 1 + 78773 18355 52805 53917 91462 91462 -0.06352675499942961 YMTFGIFK 8 Unmodified _YMTFGIFK_ 0 0 0 REV__ENSG00000164082|ENST00000395052|GRM2;REV__ENSG00000198822|ENST00000361669|GRM3 REV__ENSG00000198822|ENST00000361669|GRM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7578125 2 503.756964 1005.49937 NaN NaN NaN NaN NaN NaN NaN 42.194 1 41.887 41.387 42.387 -0.30682 0 0 0 0.95973 1 22399 22399 8.5933 0.68312 1 + 78774 24067;21865 52806 53918 91463 91463 -0.0031548534351486524 YMTLLMIAFG 10 Unmodified _YMTLLMIAFG_ 0 0 0 ENSG00000150403|ENST00000434316|TMCO3;nc|ENSG00000150403|Q6UWJ1-3|TMCO3;nc|ENSG00000150403|Q6UWJ1-2|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 ENSG00000150403|ENST00000434316|TMCO3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.2003784179688 3 387.201185 1158.58172 1.2977 0.00050248 2.8543 0.0011052 4.152 0.0016077 387.20097908551634 42.871 0.55145 38.186 37.832 38.384 -4.6846 57 35 3 0 0 0 0.65023 1 25950 25950 8.4443 3.5473 1 38974000 78775 6054 52807 53919 91464 91464 0.00877668673115295 YMTRYTSCI 9 Unmodified _YMTRYTSCI_ 0 0 0 REV__ENST00000482938.1_1_6:32134299-32134856:+|nuORF REV__ENST00000482938.1_1_6:32134299-32134856:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.75830078125 2 569.257002 1136.49945 1.2347 0.00070288 0.92028 0.00052388 2.155 0.0012268 569.7591779469424 50.348 0.40963 44.809 44.607 45.017 -5.5391 61 26 4 0 0 0 0.32871 1 31678 31678 15.847 0 1 28197000 + 78776 24449 52808 53920 91465 91465 -0.06333853405817536 YMVYHRQMET 10 Unmodified _YMVYHRQMET_ 0 0 0 REV__nc|ENSG00000065717|Q04725-3|TLE2 REV__nc|ENSG00000065717|Q04725-3|TLE2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 679.304931640625 2 679.305015 1356.59548 NaN NaN NaN NaN NaN NaN NaN 88.018 1 88.018 87.518 88.518 0 0 0 0 1.0024 1 48727 48727 0.40072 0 1 + 78777 17386 52809 53921 91466 91466 -0.06855705565749304 YNAFLDRF 8 Unmodified _YNAFLDRF_ 0 0 0 REV__ENSG00000129749|ENST00000250699|CHRNA10 REV__ENSG00000129749|ENST00000250699|CHRNA10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2587280273438 2 523.258717 1044.50288 NaN NaN NaN NaN NaN NaN NaN 13.63 1 13.63 13.13 14.13 0 0 0 0 0.97444 1 6450 6450 0.69038 0 1 + 78778 19684 52810 53922 91467 91467 -0.01759099245282414 YNAKEEDKDCL 11 Unmodified _YNAKEEDKDCL_ 0 0 0 REV__ENSG00000137812|ENST00000399668|KNL1 REV__ENSG00000137812|ENST00000399668|KNL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 664.2977294921875 2 664.295367 1326.57618 NaN NaN NaN NaN NaN NaN NaN 57.557 1 57.557 57.057 58.057 0 0 0 0 0.69464 1 32032 32032 17.113 9.8237 1 + 78779 20268 52811 53923 91468 91468 -0.07404383375614998 YNALTVALSFF 11 Unmodified _YNALTVALSFF_ 0 0 0 REV__ENST00000483298.1_1_10:64953077-64954292:-|nuORF REV__ENST00000483298.1_1_10:64953077-64954292:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.7879638671875 2 623.329339 1244.64412 0.56963 0.00035507 -0.60999 -0.00038023 -0.040364 -2.516E-05 623.3291833389812 67.902 0.20961 67.927 67.794 68.004 0.025146 16 9 2 0 0 0 0.28752 1 37305 37305 13.906 1.6654 1 1223900 + 78780 27739 52812 53924 91469 91469 0.03158854337311823 YNANIMDHIAD 11 Unmodified _YNANIMDHIAD_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.7841796875 2 638.78497 1275.55539 0.75431 0.00048184 0.7089 0.00045283 1.4632 0.00093467 638.7855031781403 64.584 0.42982 64.573 64.396 64.826 -0.010536 38 21 3 0 0 0 0.30985 1 35377 35377 26.268 0 1 3770900 78781 3090 52813 53925 91470 91470 -0.07136928964632716 YNANIMDHIAD 11 Unmodified _YNANIMDHIAD_ 0 0 0 ENSG00000115155|ENST00000272371|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF ENSG00000115155|ENST00000272371|OTOF ENSG00000115155|ENST00000272371|OTOF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 638.785400390625 2 638.78497 1275.55539 NaN NaN NaN NaN NaN NaN NaN 59.976 1 59.923 59.423 60.423 -0.053062 0 0 0 0.88164 1 32702 32702 8.1555 0 1 78782 3090 52813 53925 91471 91471 -0.07136928964632716 YNAPVRRQLR 10 Unmodified _YNAPVRRQLR_ 0 0 0 REV__nc|ENSG00000140279|Q9NRD8|DUOX2 REV__nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8704833984375 2 636.86782 1271.72109 0.077991 4.967E-05 0.36284 0.00023108 0.44084 0.00028075 636.8682014843401 80.122 2.4614 80.18 79.905 82.366 0.057587 424 103 6 0 0 0 0.63399 1 44943 44943 9.3831 9.3831 1 13269000000 + 78783 20456 52814 53926 91472 91472 0.09609510397035592 YNARYNPF 8 Unmodified _YNARYNPF_ 0 0 0 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7493896484375 2 522.748516 1043.48248 NaN NaN NaN NaN NaN NaN NaN 71.74 1 71.74 71.24 72.24 0 0 0 0 0.97444 1 39956 39956 2.5775 0.27475 1 + 78784 29488 52815 53927 91473 91473 -0.03752269905112371 YNATNYLLT 9 Unmodified _YNATNYLLT_ 0 0 0 REV__ENSG00000181004|ENST00000314218|BBS12 REV__ENSG00000181004|ENST00000314218|BBS12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.76953125 2 536.769114 1071.52368 0.2665 0.00014305 -1.536 -0.0008245 -1.2695 -0.00068145 536.7688378706534 76.601 0.31226 76.601 76.396 76.708 0 19 12 2 0 0 0 0.47846 1 42605 42605 8.7454 1.4562 1 727590 + 78785 23182 52816 53928 91474 91474 -0.00922553656278069 YNCFQSMNTF 10 Unmodified _YNCFQSMNTF_ 0 0 0 REV__nc|ENSG00000166845|Q8IYD9|LAS2 REV__nc|ENSG00000166845|Q8IYD9|LAS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7499389648438 2 627.749541 1253.48453 0.38469 0.00024149 -0.72845 -0.00045728 -0.34376 -0.00021579 627.7493760360825 51.61 0.3214 51.61 51.431 51.753 0 48 14 5 0 0 0 0.69064 1 28597 28597 3.9444 0 1 21801000 + 78786 22158 52817 53929 91475 91475 -0.13207345273826832 YNDHDRDWT 9 Unmodified _YNDHDRDWT_ 0 0 0 REV__ENSG00000104760|ENST00000427924|FGL1 REV__ENSG00000104760|ENST00000427924|FGL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.247802734375 2 611.249609 1220.48466 0.50799 0.00031051 -2.427 -0.0014835 -1.919 -0.001173 611.2477575945557 54.821 0.25558 54.821 54.664 54.92 0 18 10 2 0 0 0 0.39863 1 30449 30449 12.532 3.7861 1 3589400 + 78787 18369 52818 53930 91476 91476 -0.11675885957947685 YNDQFWKE 8 Unmodified _YNDQFWKE_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7525024414062 2 565.251089 1128.48762 -0.36998 -0.00020913 -0.06157 -3.4802E-05 -0.43155 -0.00024394 565.2511684861191 16.812 0.10492 16.812 16.717 16.822 0 43 27 2 0 0 0 0.80311 1 8205 8205 4.756 2.1785 1 605290 + 78788 21362 52819 53931 91477 91477 -0.07148010833157059 YNDQFWKE 8 Unmodified _YNDQFWKE_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2501831054688 2 565.251089 1128.48762 -0.35899 -0.00020292 -1.4209 -0.00080314 -1.7799 -0.0010061 565.2505224193967 17.014 0.098618 17.014 17.005 17.104 0 27 21 2 0 0 0 0.62219 1 8356 8356 24.021 9.1823 1 1567500 + 78789 21362 52819 53931 91478 91478 -0.07148010833157059 YNDQFWKE 8 Unmodified _YNDQFWKE_ 0 0 0 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 REV__nc|ENSG00000157106|Q96Q15-2|SMG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.2520141601562 2 565.251089 1128.48762 0.83651 0.00047284 0.22961 0.00012979 1.0661 0.00060263 565.2512054003386 18.28 0.17313 15.658 15.582 15.755 -2.6215 19 10 2 0 0 0 0.46677 1 9611 9611 37.974 11.09 1 2157300 + 78790 21362 52819 53931 91479 91479 -0.07148010833157059 YNDVVVGA 8 Unmodified _YNDVVVGA_ 0 0 0 ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11 ENSG00000137809|ENST00000315757|ITGA11 ENSG00000137809|ENST00000315757|ITGA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 836.4148559570312 1 836.414859 835.407583 0.10901 9.1182E-05 0.040724 3.4062E-05 0.14974 0.00012524 836.4144567611096 56.865 0.21041 56.865 56.763 56.974 0 11 8 2 0 0 0 0.74163 1 31653 31653 13.508 0 1 873660 78791 4970 52820 53932 91480 91480 -0.016704524363262863 YNDYNPIYDI 10 Unmodified _YNDYNPIYDI_ 0 0 0 nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 MSMS AL20221201_MKP_PDAC_01 4 430.5286865234375 3 430.527671 1288.56118 NaN NaN NaN NaN NaN NaN NaN 94.582 1 88.406 87.906 88.906 -6.1757 0 0 0 0.96981 1 62646 62646 1.9064 0.69154 1 78792 594 52821 53933 91481 91481 -0.07155507181323628 YNDYVREFHNM 11 Unmodified _YNDYVREFHNM_ 0 0 0 nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 nc|ENSG00000083896|Q96MU7-2|YTHDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 744.3235473632812 2 744.322251 1486.62995 NaN NaN NaN NaN NaN NaN NaN 74.701 1 74.701 74.201 75.201 0 0 0 0 0.94201 1 41564 41564 1.0715 0.10919 1 78793 1379 52822 53934 91482 91482 -0.09390166153275459 YNECGTSFIW 10 Unmodified _YNECGTSFIW_ 0 0 0 ENSG00000166704|ENST00000551380|ZNF606 ENSG00000166704|ENST00000551380|ZNF606 ENSG00000166704|ENST00000551380|ZNF606 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.1751708984375 3 407.174463 1218.50156 0.30618 0.00012467 0.68691 0.00027969 0.99309 0.00040436 407.1748107043045 26.181 0.32519 23.229 23.049 23.374 -2.9511 23 18 2 0 0 0 0.6606 1 14437 14437 3.8763 1.7903 1 9559100 78794 7521 52823 53935 91483 91483 -0.09895101396341488 YNECLSAPCLN 11 Unmodified _YNECLSAPCLN_ 0 0 0 ENSG00000187957|ENST00000341772|DNER ENSG00000187957|ENST00000341772|DNER ENSG00000187957|ENST00000341772|DNER MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.7619018554688 2 613.762649 1225.51074 0.46345 0.00028445 -0.38238 -0.00023469 0.08107 4.9758E-05 614.2638804177741 73.303 0.46379 73.344 73.146 73.609 0.041733 35 20 2 0 0 0 0.46578 1 40489 40489 18.146 5.6148 1 1634000 78795 9612 52824 53936 91484 91484 -0.09299076102320214 YNEDLQKFS 9 Unmodified _YNEDLQKFS_ 0 0 0 REV__ENSG00000124126|ENST00000371941|PREX1 REV__ENSG00000124126|ENST00000371941|PREX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.1820068359375 3 381.848744 1142.5244 -0.50091 -0.00019127 -2.2464 -0.00085777 -2.7473 -0.001049 381.8477413847224 19.427 0.28273 19.427 19.232 19.515 0 47 23 3 0 0 0 0.60285 1 9750 9750 1.1933 0.12188 1 877110 + 78796 19415 52825 53937 91485 91485 -0.04115759007231645 YNEGVALS 8 Unmodified _YNEGVALS_ 0 0 0 REV__ENST00000383202.6_1_3:136117609-136117651:-|nuORF REV__ENST00000383202.6_1_3:136117609-136117651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7083435058594 2 426.708525 851.402498 NaN NaN NaN NaN NaN NaN NaN 20.581 1 20.609 20.109 21.109 0.028357 0 0 0 0.97444 1 10421 10421 2.5775 0 1 + 78797 26352 52826 53938 91486 91486 -0.029147562989578546 YNEKLIDIF 9 Unmodified _YNEKLIDIF_ 0 0 0 nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A nc|ENSG00000172594|Q92484-2|SMPDL3A nc|ENSG00000172594|Q92484-2|SMPDL3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.8084106445312 2 577.808239 1153.60193 0.47279 0.00027318 -1.9136 -0.0011057 -1.4408 -0.00083253 577.8064892007015 93.953 0.50743 93.533 93.348 93.856 -0.42043 56 26 4 0 0 0 0.30202 1 51301 51301 17.113 0 1 2773600 78798 8236 52827 53939 91487 91487 0.03126878928947008 YNELNWYIKA 10 Unmodified _YNELNWYIKA_ 0 0 0 REV__ENSG00000197557|ENST00000355689|TTC30A REV__ENSG00000197557|ENST00000355689|TTC30A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.5557861328125 3 438.555672 1312.64519 NaN NaN NaN NaN NaN NaN NaN 72.061 1 72.061 71.561 72.561 0 0 0 0 1.0024 1 40129 40129 0.13989 0 1 + 78799 23857 52828 53940 91488 91488 0.001370687062262732 YNEPEKIKI 9 Unmodified _YNEPEKIKI_ 0 0 0 REV__nc|ENSG00000010072|Q9H040-3|SPRTN REV__nc|ENSG00000010072|Q9H040-3|SPRTN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.312744140625 2 567.313689 1132.61282 NaN NaN NaN NaN NaN NaN NaN 84.104 1 83.605 83.105 84.105 -0.49961 0 0 0 0.84369 1 46029 46029 2.3027 0 1 + 78800 17041 52829 53941 91489 91489 0.05182281303223135 YNEQLKSIAEC 11 Unmodified _YNEQLKSIAEC_ 0 0 0 REV__ENSG00000178852|ENST00000331493|EFCAB13 REV__ENSG00000178852|ENST00000331493|EFCAB13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8822937011719 3 433.207944 1296.602 0.57681 0.00024988 0.80487 0.00034868 1.3817 0.00059856 433.2083247733727 69.387 1.4599 69.418 68.668 70.128 0.030914 220 75 7 0 0 0 0.74203 1 37893 37893 0.08335 0 1 118170000 + 78801 23069 52830 53942 91490 91490 -0.03443489133337607 YNFCSKPWVF 10 Unmodified _YNFCSKPWVF_ 0 0 0 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 ENSG00000185666|ENST00000358763|SYN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 645.80078125 2 645.802434 1289.59032 NaN NaN NaN NaN NaN NaN NaN 72.076 1 72.115 71.615 72.615 0.039024 0 0 0 0.96981 1 39685 39685 3.9444 0 1 78802 9397 52831 53943 91491 91491 -0.04289641366062824 YNFMLYDMYYF 11 Unmodified _YNFMLYDMYYF_ 0 0 0 REV__ENSG00000124302|ENST00000650847|CHST8 REV__ENSG00000124302|ENST00000650847|CHST8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 785.3228759765625 2 785.325082 1568.63561 NaN NaN NaN NaN NaN NaN NaN 100.34 1 100.3 99.801 100.8 -0.036301 0 0 0 0.94301 1 55737 55737 0.35063 0.043601 1 + 78803 19437 52832 53944 91492 91492 -0.12596203685825458 YNFTSQYL 8 Unmodified _YNFTSQYL_ 0 0 0 nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L;ENSG00000103494|ENST00000647211|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L MSMS AL20221201_MKP_PDAC_01 4 518.2433471679688 2 518.242732 1034.47091 NaN NaN NaN NaN NaN NaN NaN 72.936 1 66.76 66.26 67.26 -6.1757 0 0 0 0.93587 1 47707 47707 13.508 0.97634 1 78804 2145 52833 53945 91493 91493 -0.04494511719099137 YNFYLPFFF 9 Unmodified _YNFYLPFFF_ 0 0 0 ENSG00000010282|ENST00000441594|HHATL ENSG00000010282|ENST00000441594|HHATL ENSG00000010282|ENST00000441594|HHATL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.7704467773438 2 629.302593 1256.59063 NaN NaN NaN NaN NaN NaN NaN 73.785 1 73.309 72.809 73.809 -0.47588 0 0 0 0.82396 1 40380 40380 4.756 0.81161 1 78805 417 52834 53946 91494 91494 -0.02739898374557015 YNGKFYDVW 9 Unmodified _YNGKFYDVW_ 0 0 0 REV__nc|ENSG00000144959|Q6PIU2-2|NCEH1 REV__nc|ENSG00000144959|Q6PIU2-2|NCEH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 596.7789306640625 2 596.277106 1190.53966 0.48101 0.00028681 1.1074 0.00066032 1.5884 0.00094714 596.2780143466138 93.316 0.36354 92.859 92.683 93.047 -0.4574 32 15 3 0 0 0 0.60285 1 50972 50972 2.3027 0 1 496060 + 78806 20747 52835 53947 91495 91495 -0.04798847419397134 YNHAMGIH 8 Unmodified _YNHAMGIH_ 0 0 0 REV__ENSG00000008311|ENST00000417368|AASS REV__ENSG00000008311|ENST00000417368|AASS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.7175598144531 2 471.716162 941.41777 NaN NaN NaN NaN NaN NaN NaN 78.918 1 78.918 78.418 79.418 0 0 0 0 0.97444 1 43844 43844 2.3027 1.5091 1 + 78807 17023 52836 53948 91496 91496 -0.05528167982743071 YNHIYQYPY 9 Unmodified _YNHIYQYPY_ 0 0 0 nc|ENSG00000125813|P15863-2|PAX1;ENSG00000125813|ENST00000613128|PAX1;nc|ENSG00000125813|P15863-3|PAX1;nc|ENSG00000125813|P15863|PAX1 nc|ENSG00000125813|P15863-2|PAX1 nc|ENSG00000125813|P15863-2|PAX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.7882080078125 2 630.787838 1259.56112 0.099707 6.2894E-05 1.8476 0.0011655 1.9474 0.0012284 630.78910955996 64.729 0.29074 64.729 64.587 64.878 0 28 13 3 0 0 0 0.39863 1 36111 36111 12.532 0.29089 1 3186800 78808 3885 52837 53949 91497 91497 -0.05827462390652727 YNHNGEWCE 9 Unmodified _YNHNGEWCE_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.214599609375 2 576.21418 1150.41381 0.57192 0.00032955 0.38175 0.00021997 0.95367 0.00054952 576.2146228080659 60.953 0.52296 60.953 60.67 61.193 0 90 17 7 0 0 0 0.58865 1 33950 33950 2.0598 0 1 16572000 78809 1679 52838 53950 91498 91498 -0.15538302267123072 YNHNGEWCE 9 Unmodified _YNHNGEWCE_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2147827148438 2 576.21418 1150.41381 0.95116 0.00054807 0.7634 0.00043988 1.7146 0.00098795 576.2145297251154 68.748 0.37299 62.573 62.332 62.705 -6.1757 29 20 2 0 0 0 0.34999 1 44854 44854 14.838 0.93222 1 17451000 78810 1679 52838 53950 91499 91499 -0.15538302267123072 YNHRFHRI 8 Unmodified _YNHRFHRI_ 0 0 0 nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.5377197265625 3 381.537058 1141.58934 1.2755 0.00048664 -0.2191 -8.3595E-05 1.0564 0.00040305 381.5369511477313 18.861 0.18081 16.24 16.139 16.32 -2.6215 14 10 2 0 0 0 0.78849 1 9940 9940 10.824 2.6684 1 1889900 78811 4729 52839 53951 91500 91500 0.02421325099930982 YNHRKEMRL 9 Unmodified _YNHRKEMRL_ 0 0 0 REV__ENST00000503183.1_1_5:137848440-137853282:-|nuORF REV__ENST00000503183.1_1_5:137848440-137853282:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.2286987304688 3 416.22063 1245.64006 0.51481 0.00021427 0.88703 0.0003692 1.4018 0.00058347 416.22131325255924 46.126 0.65086 46.098 45.926 46.577 -0.028011 66 30 5 0 0 0 0.54213 1 25036 25036 4.897 2.2658 1 69099000 + 78812 19256 52840 53952 91501 91501 0.027064863626264923 YNIANDHRSV 10 Unmodified _YNIANDHRSV_ 0 0 0 REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6 REV__nc|ENSG00000186976|Q5THR3-3|EFCAB6 MSMS AL20221201_MKP_PDAC_01 4 594.334716796875 2 594.791444 1187.56833 NaN NaN NaN NaN NaN NaN NaN 93.947 1 87.772 87.272 88.272 -6.1757 0 0 0 0.76313 1 62216 62216 13.906 0 1 + 78813 23610 52841 53953 91502 91502 -0.017947297902537684 YNICYYAL 8 Unmodified _YNICYYAL_ 0 0 0 ENSG00000283697|ENST00000431993|HSFX3;ENSG00000283463|ENST00000457775|HSFX4 ENSG00000283697|ENST00000431993|HSFX3 ENSG00000283697|ENST00000431993|HSFX3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.7362060546875 2 511.736228 1021.4579 NaN NaN NaN NaN NaN NaN NaN 7.3336 1 7.3488 6.8488 7.8488 0.015238 0 0 0 0.97444 1 3660 3660 0 0 1 78814 10954 52842 53954 91503 91503 -0.051966661028586714 YNIFVQYLN 9 Unmodified _YNIFVQYLN_ 0 0 0 REV__nc|ENSG00000134215|Q9UKW4-2|VAV3 REV__nc|ENSG00000134215|Q9UKW4-2|VAV3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.3011474609375 2 587.300581 1172.58661 -0.12372 -7.2661E-05 0.029783 1.7492E-05 -0.093937 -5.5169E-05 587.3005737075422 69.943 0.37727 69.464 69.159 69.536 -0.47903 25 16 2 0 0 0 0.2143 1 38258 38258 21.747 2.4897 1 2427500 + 78815 19962 52843 53955 91504 91504 0.0072201213176867896 YNILRGIGKL 10 Unmodified _YNILRGIGKL_ 0 0 0 nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF nc|ENSG00000131620|Q5XXA6-2|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.32421875 2 573.853316 1145.69208 0.6309 0.00036204 -1.1373 -0.00065266 -0.50643 -0.00029062 573.8526574017363 58.587 0.22923 58.526 58.414 58.643 -0.060722 16 11 2 0 0 0 0.22941 1 31945 31945 9.3831 1.473 1 2623300 78816 4337;14798 52844 53956 91505 91505 0.12505973048041596 YNILRGIGKL 10 Unmodified _YNILRGIGKL_ 0 0 0 nc|ENSG00000131620|Q5XXA6-2|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF nc|ENSG00000131620|Q5XXA6-2|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF nc|ENSG00000131620|Q5XXA6-2|ANO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.9053649902344 3 382.904636 1145.69208 1.8192 0.00069657 -0.31673 -0.00012128 1.5025 0.0005753 382.9045766147613 90.767 0.41465 84.591 84.34 84.755 -6.1757 42 24 2 0 0 0 0.51153 1 59881 59881 15.739 0.49014 1 18312000 78817 4337;14798 52844 53956 91506 91506 0.12505973048041596 YNIQEEYF 8 Unmodified _YNIQEEYF_ 0 0 0 REV__nc|ENSG00000145703|Q13576-3|IQGAP2 REV__nc|ENSG00000145703|Q13576-3|IQGAP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.7476196289062 2 553.245472 1104.47639 -0.10363 -5.7334E-05 1.3701 0.00075802 1.2665 0.00070069 553.7475714047744 34.469 0.19692 34.277 34.174 34.371 -0.19132 10 8 2 0 0 0 0.80143 1 18018 18018 5.7604 1.0044 1 2006100 + 78818 20784 52845 53957 91507 91507 -0.07166832927282485 YNKDGTLDIF 10 Unmodified _YNKDGTLDIF_ 0 0 0 nc|ENSG00000085491|Q6NUK1-2|SLC25A24 nc|ENSG00000085491|Q6NUK1-2|SLC25A24 nc|ENSG00000085491|Q6NUK1-2|SLC25A24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.7913208007812 2 593.292953 1184.57135 0.0915 5.4286E-05 -0.99699 -0.00059151 -0.90549 -0.00053722 593.2927599445756 46.83 0.54113 46.83 46.481 47.022 0 95 25 5 0 0 0 0.41822 1 25454 25454 30.637 5.2372 1 159000000 78819 16060 52846 53958 91508 91508 -0.013548994561006111 YNKEDRESF 9 Unmodified _YNKEDRESF_ 0 0 0 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 ENSG00000143195|ENST00000271417|ILDR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.270751953125 2 594.27001 1186.52547 0.15485 9.2023E-05 -0.90332 -0.00053682 -0.74847 -0.00044479 594.2694016837686 48.994 0.44778 48.95 48.828 49.275 -0.04369 30 21 2 0 0 0 0.39863 1 26497 26497 12.532 2.3482 1 1120600 78820 5475 52847 53959 91509 91509 -0.06033544638353305 YNKETFEL 8 Unmodified _YNKETFEL_ 0 0 0 REV__ENSG00000185972|ENST00000335119|CCIN REV__ENSG00000185972|ENST00000335119|CCIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2548217773438 2 522.25584 1042.49713 0.42174 0.00022025 -0.50318 -0.00026279 -0.081444 -4.2535E-05 522.2554614537075 76.527 0.2417 76.527 76.443 76.685 0 13 9 2 0 0 0 0.77186 1 42563 42563 10.824 1.4765 1 419350 + 78821 23541 52848 53960 91510 91510 -0.022422425476179342 YNKFKNMFL 9 Unmodified _YNKFKNMFL_ 0 0 0 ENSG00000164985|ENST00000380733|PSIP1 ENSG00000164985|ENST00000380733|PSIP1 ENSG00000164985|ENST00000380733|PSIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 401.8710021972656 3 402.21096 1203.61105 -0.21706 -8.7303E-05 -3.0908 -0.0012431 -3.3078 -0.0013305 402.21077740700133 51.613 0.31683 51.554 51.435 51.751 -0.058914 25 15 2 0 0 0 0.21404 1 27911 27911 5.2969 2.7984 1 1166500 78822 7276 52849 53961 91511 91511 0.01738949013633828 YNKIREDF 8 Unmodified _YNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7745361328125 2 542.774731 1083.53491 -0.23876 -0.00012959 -0.83588 -0.00045369 -1.0746 -0.00058329 542.774395872386 35.275 0.21353 35.275 35.146 35.36 0 18 10 2 0 0 0 0.27285 1 18671 18671 58.679 20.705 1 6253800 78823 9152 52850 53962 91512 91512 -0.0035173156215932977 YNKIREDF 8 Unmodified _YNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.289794921875 2 542.774731 1083.53491 -0.5907 -0.00032062 0.38376 0.0002083 -0.20694 -0.00011232 542.7748376522916 35.435 0.18098 35.213 35.107 35.288 -0.2224 13 7 2 0 0 0 8.7369 1 18536 18536 29.082 9.6426 1 3450400 78824 9152 52850 53962 91513 91513 -0.0035173156215932977 YNKIREDF 8 Unmodified _YNKIREDF_ 0 0 0 ENSG00000183486|ENST00000330714|MX2;ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENST00000493753.1_1_21:42769576-42771509:+|nuORF ENSG00000183486|ENST00000330714|MX2 ENSG00000183486|ENST00000330714|MX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.77490234375 2 542.774731 1083.53491 0.34017 0.00018463 -3.0092 -0.0016333 -2.669 -0.0014487 542.7730908114423 39.712 0.37177 35.261 35.107 35.479 -4.4509 54 23 3 0 0 0 0.17028 2 23544 23544;23678 81.89 35.869 1 32035000 78825 9152 52850 53962 91514;91515 91514 -0.0035173156215932977 YNKLFWFKV 9 Unmodified _YNKLFWFKV_ 0 0 0 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 REV__nc|ENSG00000136731|Q9NYU2-2|UGGT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.8449096679688 2 622.844959 1243.67537 NaN NaN NaN NaN NaN NaN NaN 103.46 1 103.36 102.86 103.86 -0.10458 0 0 0 0.8622 1 56433 56433 0 0 1 + 78826 20178 52851 53963 91516 91516 0.0632747216207008 YNKLGEDVF 9 Unmodified _YNKLGEDVF_ 0 0 0 REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF REV__ENST00000565298.5_1_16:1576517-1634259:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.7683715820312 2 542.769114 1083.52368 0.22004 0.00011943 1.0912 0.00059228 1.3113 0.00071172 542.769493843621 86.168 0.29791 86.168 85.995 86.293 0 25 14 2 0 0 0 0.54444 1 47690 47690 4.756 0 1 863450 + 78827 23639 52852 53964 91517 91517 -0.014745536562713824 YNKNNSSYL 9 Unmodified _YNKNNSSYL_ 0 0 0 REV__nc|ENSG00000211598|P06312|IGKV4-1 REV__nc|ENSG00000211598|P06312|IGKV4-1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2579956054688 2 551.76182 1101.50909 0.53447 0.0002949 -3.2196 -0.0017765 -2.6852 -0.0014816 552.2601456224736 90.332 0.26493 89.83 89.661 89.926 -0.50171 19 11 2 0 0 0 0.21473 1 49328 49328 4.3292 0 1 642540 + 78828 29923 52853 53965 91518 91518 -0.03760625804443407 YNKPGGQGTG 10 Unmodified _YNKPGGQGTG_ 0 0 0 nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 nc|ENSG00000198198|Q5T011-5|SZT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 489.7357177734375 2 489.735606 977.456658 NaN NaN NaN NaN NaN NaN NaN 9.8156 1 9.8332 9.3332 10.333 0.017581 0 0 0 1.0061 1 4863 4863 0 0 1 78829 10061 52854 53966 91519 91519 -0.03297164147363674 YNKQAEIDKTF 11 Unmodified _YNKQAEIDKTF_ 0 0 0 REV__ENSG00000111339|ENST00000228936|ART4 REV__ENSG00000111339|ENST00000228936|ART4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.8981628417969 3 452.897987 1355.67213 -0.12754 -5.7764E-05 1.5519 0.00070287 1.4244 0.00064511 453.2333681581855 39.441 0.17356 39.143 39.07 39.243 -0.29716 13 7 2 0 0 0 0.69838 1 20812 20812 4.4062 0.56024 1 2410800 + 78830 18749 52855 53967 91520 91520 0.008521325267338398 YNKQSFTTG 9 Unmodified _YNKQSFTTG_ 0 0 0 REV__ENST00000314970.10_1_4:185606637-185606834:+|nuORF REV__ENST00000314970.10_1_4:185606637-185606834:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 523.2725830078125 2 523.251089 1044.48762 NaN NaN NaN NaN NaN NaN NaN 40.125 1 35.595 35.095 36.095 -4.5294 0 0 0 0.15549 1 23922 23922 36.127 0 1 + 78831 25454 52856 53968 91521 91521 -0.032840108331583906 YNKSQIIQSI 10 Unmodified _YNKSQIIQSI_ 0 0 0 DSC1|p.I283Sfs*38|1|0.23|ENSG00000134765|chr18:31145703-31145703|T/-|frameshift_variant DSC1|p.I283Sfs*38|1|0.23|ENSG00000134765|chr18:31145703-31145703|T/-|frameshift_variant DSC1|p.I283Sfs*38|1|0.23|ENSG00000134765|chr18:31145703-31145703|T/-|frameshift_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.3324584960938 2 597.32987 1192.64519 -0.056408 -3.3694E-05 3.4554 0.002064 3.399 0.0020303 597.331489941511 99.686 0.10995 93.51 93.448 93.558 -6.1757 12 6 2 0 0 0 0.65471 1 66493 66493 8.7454 3.0136 1 15060000 78832 243 52857 53969 91522 91522 0.056570687062503566 YNKVIRHY 8 Unmodified _YNKVIRHY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2273559570312 2 546.801083 1091.58761 0.83506 0.00045661 -0.40663 -0.00022234 0.42843 0.00023427 546.8011480631525 79.945 0.37836 79.455 79.235 79.614 -0.48932 38 15 4 0 0 0 0.80624 1 43685 43685 2.8892 2.0956 1 4444300 78833 8116 52858 53970 91523 91523 0.04548271291309902 YNLARSSRPF 10 Unmodified _YNLARSSRPF_ 0 0 0 nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 nc|ENSG00000077235|Q12789-3|GTF3C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.2156982421875 3 404.215761 1209.62546 0.017455 7.0558E-06 0.36256 0.00014655 0.38002 0.00015361 404.2160144128081 26.097 0.37642 26.124 25.984 26.36 0.026951 40 17 4 0 0 0 0.52888 1 13494 13494 8.9762 0 1 99450000 78834 1209 52859 53971 91524 91524 0.029027374861243516 YNLEEVDVL 9 Unmodified _YNLEEVDVL_ 0 0 0 REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6 REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2765502929688 2 547.274229 1092.53391 1.9121 0.0010465 1.9028 0.0010413 3.8149 0.0020878 547.2751172433955 62.576 0.25529 56.401 56.248 56.503 -6.1757 27 12 3 0 0 0 0.14594 1 40373 40373 37.974 1.4678 1 13557000 + 78835 21914 52860 53972 91525 91525 -0.008659907217179352 YNLFLEENI 9 Unmodified _YNLFLEENI_ 0 0 0 nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 nc|ENSG00000110218|Q96RD7-2|PANX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2911376953125 2 577.790047 1153.56554 1.1804 0.00068205 -0.24026 -0.00013882 0.94019 0.00054323 577.7897645072463 100.35 0.36007 94.174 94.014 94.374 -6.1757 84 22 5 0 0 0 0.28047 1 67210 67210 18.135 3.2967 1 1571799999.9999998 78836 2708 52861 53973 91526 91526 -0.005099979677424926 YNLLFSESL 9 Unmodified _YNLLFSESL_ 0 0 0 ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-9|DST;nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-14|DST ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001|DST nc|ENSG00000151914|Q03001|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7757568359375 2 543.279315 1084.54408 -0.6656 -0.0003616 -0.87786 -0.00047692 -1.5435 -0.00083853 543.2790459573823 56.027 0.49818 55.541 55.23 55.728 -0.48554 59 24 3 0 0 0 0.41742 1 30278 30278 11.64 3.047 1 38647000 78837 6155;16276 52862 53974 91527 91527 0.005186170035358373 YNLLYKLHA 9 Unmodified _YNLLYKLHA_ 0 0 0 ENST00000260327.8_1_15:44817819-44817921:+|nuORF ENST00000260327.8_1_15:44817819-44817921:+|nuORF ENST00000260327.8_1_15:44817819-44817921:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.8823852539062 3 378.88172 1133.62333 0.63585 0.00024091 -0.26033 -9.8634E-05 0.37552 0.00014228 378.8817371191443 58.456 0.21754 58.395 58.235 58.452 -0.060719 15 10 2 0 0 0 0.54213 1 31798 31798 4.897 0.70751 1 2074500 78838 11225 52863 53975 91528 91528 0.06186308748328884 YNLMQAMRFA 10 Unmodified _YNLMQAMRFA_ 0 0 0 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 ENSG00000179002|ENST00000375371|TAS1R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5357666015625 3 415.535338 1243.58418 0.57199 0.00023768 -0.0059066 -2.4544E-06 0.56608 0.00023523 415.53554625876154 47.466 0.30291 47.427 47.237 47.54 -0.038643 51 13 5 0 0 0 0.60623 1 25548 25548 6.1918 2.5992 1 11991000 78839 8797 52864 53976 91529 91529 -0.027864828692145238 YNLNKRHI 8 Unmodified _YNLNKRHI_ 0 0 0 REV__ENSG00000174231|ENST00000304992|PRPF8 REV__ENSG00000174231|ENST00000304992|PRPF8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2015380859375 3 353.201564 1056.58286 0.87131 0.00030775 0.76483 0.00027014 1.6361 0.00057789 353.20168194812743 23.521 0.40731 20.694 20.508 20.915 -2.8273 56 24 3 0 0 0 0.67481 1 12800 12800 14.838 3.3436 1 8616300 + 78840 22776 52865 53977 91530 91530 0.05683387148565089 YNLQVDLL 8 Unmodified _YNLQVDLL_ 0 0 0 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 ENSG00000132740|ENST00000255078|IGHMBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.2683715820312 2 489.26875 976.522947 -0.36628 -0.00017921 1.0141 0.00049619 0.64787 0.00031698 489.26876968975387 77.322 0.28318 76.84 76.673 76.956 -0.4826 23 12 3 0 0 0 0.74163 1 42311 42311 13.508 0 1 1553900 78841 4444 52866 53978 91531 91531 0.03374651694673503 YNLRHRLE 8 Unmodified _YNLRHRLE_ 0 0 0 ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA ENSG00000134780|ENST00000257215|DAGLA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.5362854003906 3 367.536835 1099.58868 -0.3574 -0.00013136 -2.7948 -0.0010272 -3.1522 -0.0011586 367.8699301284873 22.205 0.24271 22.205 22.082 22.324 0 15 11 2 0 0 0 0.80992 1 11256 11256 0.40072 0 1 426300 78842 4640 52867 53979 91532 91532 0.04286485660236394 YNLSPLNGL 9 Unmodified _YNLSPLNGL_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7665710449219 2 495.766374 989.518196 0.63334 0.00031399 -0.43739 -0.00021684 0.19595 9.7144E-05 495.7664076363679 60.41 0.44619 60.41 60.199 60.646 0 49 19 4 0 0 0 0.031062 1 33642 33642 54.774 8.7526 1 9119800 + 78843 21763 52868 53980 91533 91533 0.023017675519099612 YNLSPLNGL 9 Unmodified _YNLSPLNGL_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 495.7666931152344 2 495.766374 989.518196 -0.17159 -8.5071E-05 -0.26225 -0.00013001 -0.43384 -0.00021508 495.7662950782754 60.936 0.2454 60.447 60.332 60.578 -0.48932 18 11 2 0 0 0 0.031062 1 33191 33191 54.774 8.7526 1 9577800 + 78844 21763 52868 53980 91534 91534 0.023017675519099612 YNLSPLNGL 9 Unmodified _YNLSPLNGL_ 0 0 0 REV__ENSG00000163428|ENST00000295628|LRRC58 REV__ENSG00000163428|ENST00000295628|LRRC58 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 495.766374 989.518196 -0.17159 -8.5071E-05 -0.26225 -0.00013001 -0.43384 -0.00021508 495.7662950782754 60.936 0.2454 60.447 60.332 60.578 -0.48932 0.018358 0.00011957 NaN 54.774 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 9577800 + 78845 21763 52868 53980 0.023017675519099612 YNLTSSDEDE 10 Unmodified _YNLTSSDEDE_ 0 0 0 nc|ENSG00000116815|P19256-2|CD58;nc|ENSG00000116815|P19256-3|CD58;ENSG00000116815|ENST00000369489|CD58 nc|ENSG00000116815|P19256-2|CD58 nc|ENSG00000116815|P19256-2|CD58 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.4909057617188 3 391.491174 1171.45169 0.4664 0.00018259 -1.1753 -0.0004601 -0.70885 -0.00027751 391.49067346560736 60.3 0.29604 60.3 60.178 60.474 0 21 12 2 0 0 0 0.69385 1 33668 33668 3.5871 3.5871 1 1127600 78846 3257 52869 53981 91535 91535 -0.12717557591304285 YNNIMRHYL 9 Oxidation (M) _YNNIM(Oxidation (M))RHYL_ YNNIM(1)RHYL YNNIM(78)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.8018798828125 2 620.30059 1238.58663 0.072108 4.4728E-05 -0.65271 -0.00040488 -0.58061 -0.00036015 620.3002457466044 32.247 0.16848 32.277 32.173 32.341 0.029743 13 7 2 0 0 0 0.010818 1 16924 16924 78.149 62 1 3815700 78847 3102 52870 53982 91536 91536 543 -0.02312311139871781 YNNIMRHYL 9 Oxidation (M) _YNNIM(Oxidation (M))RHYL_ YNNIM(1)RHYL YNNIM(71)RHYL 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.2997436523438 2 620.30059 1238.58663 0.10957 6.7969E-05 -0.54567 -0.00033848 -0.43609 -0.00027051 620.3003958244909 32.473 0.22491 32.503 32.366 32.591 0.029743 20 8 3 0 0 0 0.013323 1 17056 17056 71.134 52.76 1 2782300 78848 3102 52870 53982 91537 91537 543 -0.02312311139871781 YNNIMRHYL 9 Oxidation (M) _YNNIM(Oxidation (M))RHYL_ 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 620.30059 1238.58663 -0.18468 -0.00011455 -0.68691 -0.00042609 -0.87158 -0.00054064 620.8012866872168 32.6 0.1598 32.471 32.392 32.552 -0.12915 -0.015881 -0.00010826 NaN 71.134 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1439700 78849 3102 52870 53982 543 -0.02312311139871781 YNNIMRHYL 9 Oxidation (M) _YNNIM(Oxidation (M))RHYL_ 0 0 1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 620.30059 1238.58663 -0.10077 -6.2506E-05 0.19141 0.00011873 0.09064 5.6224E-05 620.3006531575555 32.363 0.11129 32.233 32.176 32.287 -0.12915 -0.021592 0.00076817 NaN 78.149 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1394700 78850 3102 52870 53982 543 -0.02312311139871781 YNNIMRHYL 9 Unmodified _YNNIMRHYL_ 0 0 0 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 ENSG00000115267|ENST00000649979|IFIH1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3060913085938 2 612.303133 1222.59171 1.133 0.00069376 -2.8332 -0.0017348 -1.7001 -0.001041 612.3027538977617 47.232 0.20101 47.199 47.123 47.324 -0.033421 13 9 2 0 0 0 0.0041763 1 25479 25479 120.45 92.822 1 1600600 78851 3102 52870 53983 91538 91538 -0.0106800727726295 YNNISGLTDF 10 Unmodified _YNNISGLTDF_ 0 0 0 nc|ENSG00000167261|Q9H4A9-2|DPEP2;nc|ENSG00000167261|Q9H4A9-3|DPEP2;ENSG00000167261|ENST00000393847|DPEP2 nc|ENSG00000167261|Q9H4A9-2|DPEP2 nc|ENSG00000167261|Q9H4A9-2|DPEP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5165100097656 3 381.848744 1142.5244 -0.50091 -0.00019127 -2.2464 -0.00085777 -2.7473 -0.001049 381.8477413847224 19.427 0.28273 19.427 19.232 19.515 0 47 23 3 0 0 0 0.70895 1 9741 9741 1.9064 0 1 877110 78852 7593 52871 53984 91539 91539 -0.041157590072543826 YNNMFIHRM 9 Unmodified _YNNMFIHRM_ 0 0 0 REV__ENSG00000123104|ENST00000381340|ITPR2 REV__ENSG00000123104|ENST00000381340|ITPR2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.1918029785156 3 409.191683 1224.55322 NaN NaN NaN NaN NaN NaN NaN 14.049 1 14.049 13.549 14.549 0 0 0 0 0.85798 1 6657 6657 0.23584 0 1 + 78853 19369 52872 53985 91540 91540 -0.05007636183449904 YNNNNSSS 8 Unmodified _YNNNNSSS_ 0 0 0 REV__ENST00000442856.1_1_16:79338-84879:-|nuORF REV__ENST00000442856.1_1_16:79338-84879:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 450.1768188476562 2 450.178121 898.341688 NaN NaN NaN NaN NaN NaN NaN 43.253 1 38.489 37.989 38.989 -4.7648 0 0 0 0.96305 1 26250 26250 7.9102 2.6795 1 + 78854 19440 52873 53986 91541 91541 -0.11154893349169015 YNNSRMLHF 9 Oxidation (M) _YNNSRM(Oxidation (M))LHF_ YNNSRM(1)LHF YNNSRM(51)LHF 0 0 1 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MSMS AL20221201_MKP_PDAC_01 4 599.2772827148438 2 599.277115 1196.53968 NaN NaN NaN NaN NaN NaN NaN 35.985 1 31.792 31.292 32.292 -4.1928 0 0 0 0.06887 1 20961 20961 51.415 30.962 1 78855 7770 52874 53987 91542 91542 1324 -0.0507317069104829 YNNSRMLHF 9 Unmodified _YNNSRMLHF_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF;nc|ENSG00000168488|Q8WWM7-7|ATXN2L;ENST00000562867.5_1_16:28834808-28837752:+|nuORF;ENST00000432006.1_1_7:16625648-16626215:-|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 591.8073120117188 2 591.279657 1180.54476 0.61822 0.00036554 -2.0394 -0.0012059 -1.4212 -0.00084031 591.2781704623582 45.876 0.27607 40.921 40.759 41.035 -4.9549 19 17 2 0 0 0 0.098534 1 28235 28235 41.956 20.209 1 5835300 78856 7770 52874 53988 91543 91543 -0.038288668284167215 YNPALLSNCF 10 Unmodified _YNPALLSNCF_ 0 0 0 REV__ENST00000367808.7_1_1:169356661-169356787:+|nuORF REV__ENST00000367808.7_1_1:169356661-169356787:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.271728515625 2 571.270967 1140.52738 0.22543 0.00012878 2.5346 0.0014479 2.76 0.0015767 571.2715337968851 66.034 0.2189 65.551 65.411 65.63 -0.48323 11 9 2 0 0 0 0.66569 1 36071 36071 6.7232 0 1 1948200 + 78857 25997 52875 53989 91544 91544 -0.03726207154090844 YNPDEQLRKQ 10 Unmodified _YNPDEQLRKQ_ 0 0 0 REV__nc|ENSG00000204463|P46379-4|BAG6 REV__nc|ENSG00000204463|P46379-4|BAG6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8876037597656 3 430.886081 1289.63641 NaN NaN NaN NaN NaN NaN NaN 103.79 1 103.69 103.19 104.19 -0.096809 0 0 0 0.99388 1 56600 56600 0.56317 0 1 + 78858 24172 52876 53990 91545 91545 0.003180950697469598 YNPEVFDKT 9 Unmodified _YNPEVFDKT_ 0 0 0 nc|ENSG00000124541|Q96EU6-2|RRP36;ENSG00000124541|ENST00000244496|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 nc|ENSG00000124541|Q96EU6-2|RRP36 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7664794921875 2 556.766571 1111.51859 0.63885 0.00035569 0.76109 0.00042375 1.3999 0.00077944 556.7668462227025 61.007 0.37199 61.007 60.863 61.235 0 35 15 3 0 0 0 0.32235 1 34002 34002 16.149 3.1066 1 1712600 78859 3796 52877 53991 91546 91546 -0.03270857518896264 YNPFYAFL 8 Unmodified _YNPFYAFL_ 0 0 0 ENSG00000146909|ENST00000275820|NOM1 ENSG00000146909|ENST00000275820|NOM1 ENSG00000146909|ENST00000275820|NOM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7538452148438 2 517.752736 1033.49092 NaN NaN NaN NaN NaN NaN NaN 76.477 1 76.477 75.977 76.977 0 0 0 0 0.97444 1 42522 42522 2.8892 0 1 78860 5808 52878 53992 91547 91547 -0.024487159884984067 YNPHVHQL 8 Unmodified _YNPHVHQL_ 0 0 0 ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-4|DLG5;nc|ENSG00000151208|Q8TDM6-2|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5 ENSG00000151208|ENST00000372391|DLG5 ENSG00000151208|ENST00000372391|DLG5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.2581176757812 2 504.256508 1006.49846 0.1646 8.2999E-05 1.3324 0.00067185 1.497 0.00075485 504.25749802996006 24.798 0.21571 21.915 21.852 22.068 -2.8831 29 13 3 0 0 0 0.056236 1 13516 13516 131.3 80.443 1 10803000 78861 6097 52879 53993 91548 91548 -0.004525636681933065 YNPLDITSVF 10 Unmodified _YNPLDITSVF_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.29931640625 2 584.797872 1167.58119 0.30791 0.00018007 -0.62518 -0.00036561 -0.31727 -0.00018554 584.797461685804 92.9 0.42677 92.442 92.233 92.66 -0.4574 62 22 3 0 0 0 0.56348 1 50711 50711 13.042 4.2971 1 10380000 + 78862 17104 52880 53994 91549 91549 0.0041028854927844804 YNPLDITSVF 10 Unmodified _YNPLDITSVF_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.29931640625 2 584.797872 1167.58119 0.30791 0.00018007 -0.62518 -0.00036561 -0.31727 -0.00018554 584.797461685804 92.9 0.42677 92.442 92.233 92.66 -0.4574 62 22 3 0 0 0 0.23057 1 50711 50711 13.042 4.2971 1 10380000 + 78863 17104 52880 53994 91550 91550 0.0041028854927844804 YNPLSLDTISF 11 Unmodified _YNPLSLDTISF_ 0 0 0 REV__ENSG00000180694|ENST00000458549|TMEM64 REV__ENSG00000180694|ENST00000458549|TMEM64 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8837890625 3 423.883566 1268.62887 0.59565 0.00025249 0.94858 0.00040209 1.5442 0.00065458 423.8839740374739 52.27 0.18168 52.211 52.107 52.289 -0.058914 18 8 3 0 0 0 0.71036 1 28315 28315 1.3296 0.11481 1 2407500 + 78864 23163 52881 53995 91551 91551 0.005299427494492193 YNPPDENQIVG 11 Unmodified _YNPPDENQIVG_ 0 0 0 ENSG00000119514|ENST00000375011|GALNT12;nc|ENSG00000119514|Q8IXK2-2|GALNT12 ENSG00000119514|ENST00000375011|GALNT12 ENSG00000119514|ENST00000375011|GALNT12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.8633422851562 3 415.863053 1244.56733 NaN NaN NaN NaN NaN NaN NaN 16.439 1 16.444 15.944 16.944 0.0050564 0 0 0 0.94307 1 8243 8243 0.08335 0 1 78865 3441 52882 53996 91552 91552 -0.04516988949808365 YNPPESEYYK 10 Unmodified _YNPPESEYYK_ 0 0 0 ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B ENSG00000114166|ENST00000263754|KAT2B MSMS AL20221201_MKP_PDAC_01 4 430.5295104980469 3 430.527671 1288.56118 NaN NaN NaN NaN NaN NaN NaN 93.61 1 87.434 86.934 87.934 -6.1757 0 0 0 0.99248 1 61971 61971 0.62683 0.063655 1 78866 3022 52883 53997 91553 91553 -0.07155507181346366 YNPRTNQWSP 10 Unmodified _YNPRTNQWSP_ 0 0 0 nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 nc|ENSG00000076321|Q9Y2M5-2|KLHL20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 631.8007202148438 2 631.799269 1261.58398 0.79036 0.00049935 0.57698 0.00036453 1.3673 0.00086388 631.799267504116 57.288 0.27718 57.222 57.14 57.418 -0.066036 32 13 3 0 0 0 0.67033 1 31284 31284 6.2058 0 1 2883700 78867 1185 52884 53998 91554 91554 -0.03634443273199395 YNQFIRPVENV 11 Unmodified _YNQFIRPVENV_ 0 0 0 ENST00000529467.1_1_8:42620195-42623609:-|nuORF;ENST00000530869.1_1_8:42614249-42623609:-|nuORF;nc|ENSG00000147434|Q15825-2|CHRNA6;ENSG00000147434|ENST00000276410|CHRNA6 ENST00000529467.1_1_8:42620195-42623609:-|nuORF ENST00000529467.1_1_8:42620195-42623609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.2415161132812 3 460.241976 1377.7041 -0.0073801 -3.3966E-06 -3.0317 -0.0013953 -3.0391 -0.0013987 460.240299875984 54.795 0.21907 54.329 54.242 54.461 -0.46664 13 10 2 0 0 0 0.73506 1 29774 29774 0.32927 0 1 2368900 78868 5850 52885 53999 91555 91555 0.030355450005799867 YNQKHSLF 8 Unmodified _YNQKHSLF_ 0 0 0 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 ENSG00000165175|ENST00000614558|MID1IP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.7666625976562 2 518.764166 1035.51378 1.0095 0.00052369 0.92335 0.000479 1.9328 0.0010027 518.7649281774327 32.084 0.44752 28.388 28.19 28.638 -3.6958 33 23 2 0 0 0 0.1875 1 18271 18271 74.929 40.827 1 17295000 78869 7303 52886 54000 91556 91556 -0.002556968710223373 YNRPNWKL 8 Unmodified _YNRPNWKL_ 0 0 0 REV__ENSG00000137842|ENST00000260403|TMEM62 REV__ENSG00000137842|ENST00000260403|TMEM62 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7600708007812 2 545.793258 1089.57196 0.59908 0.00032697 0.32215 0.00017583 0.92123 0.0005028 545.7933741466682 73.772 0.35405 73.772 73.568 73.922 0 34 14 3 0 0 0 8.7369 1 40982 40982 2.5775 0 1 2683900 + 78870 20274 52887 54001 91557 91557 0.030759847742729107 YNSETETLS 9 Unmodified _YNSETETLS_ 0 0 0 REV__ENSG00000173908|ENST00000306658|KRT28 REV__ENSG00000173908|ENST00000306658|KRT28 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.5736083984375 2 522.230019 1042.44548 0.35029 0.00018293 0.25026 0.00013069 0.60055 0.00031363 522.2300671909898 70.949 0.50787 70.471 70.308 70.816 -0.47735 27 22 2 0 0 0 0.18118 1 38755 38755 19.257 4.6753 1 1350000 + + 78871 16884 52888 54002 91558 91558 -0.07404031032183411 YNSVVCYHF 9 Unmodified _YNSVVCYHF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.78857421875 2 566.250034 1130.48552 -0.22361 -0.00012662 3.309 0.0018737 3.0853 0.0017471 566.2502620621426 25.517 0.16446 25.517 25.427 25.591 0 11 7 2 0 0 0 0.21052 1 13043 13043 6.7232 1.4925 1 566680 + 78872 17629 52889 54003 91559 91559 -0.07450762842609038 YNSWYDASSF 10 Unmodified _YNSWYDASSF_ 0 0 0 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 REV__nc|ENSG00000133858|O60293-2|ZFC3H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 620.2509155273438 2 620.251286 1238.48802 0.4981 0.00030895 0.33602 0.00020842 0.83412 0.00051736 620.2514921073778 74.682 0.48071 74.728 74.481 74.961 0.045959 62 21 4 0 0 0 0.69064 1 41264 41264 3.9444 0.3479 1 11835000 + 78873 19937 52890 54004 91560 91560 -0.1216863590398134 YNTAADALAA 10 Unmodified _YNTAADALAA_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7373657226562 2 490.737814 979.461075 NaN NaN NaN NaN NaN NaN NaN 1.5935 1 1.5935 1.0935 2.0935 0 0 0 0 1.0061 1 782 782 0 0 1 78874 5298 52891 54005 91561 91561 -0.029476997244955783 YNTCYQTYIH 10 Unmodified _YNTCYQTYIH_ 0 0 0 REV__ENSG00000120278|ENST00000696526|PLEKHG1 REV__ENSG00000120278|ENST00000696526|PLEKHG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.7833251953125 2 653.282063 1304.54957 0.7396 0.00048316 -2.505 -0.0016365 -1.7654 -0.0011533 653.2804909774803 79.399 0.26231 78.91 78.727 78.989 -0.48933 22 10 3 0 0 0 0.67033 1 43457 43457 6.2058 1.3088 1 1177300 + 78875 19235 52892 54006 91562 91562 -0.09052027476309377 YNTLLPYTF 9 Unmodified _YNTLLPYTF_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2904663085938 2 566.289682 1130.56481 0.86661 0.00049075 -0.092855 -5.2583E-05 0.77375 0.00043817 566.2899621441718 81.797 0.74822 81.302 80.95 81.698 -0.4952 96 29 4 0 0 0 0.19361 1 44762 44762 32.305 2.0807 1 11996000 78876 9690 52893 54007 91563 91563 0.00475207383169618 YNTLLPYTF 9 Unmodified _YNTLLPYTF_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2911987304688 2 566.289682 1130.56481 1.3986 0.000792 0.70895 0.00040147 2.1075 0.0011935 566.2900001969412 81.225 0.99336 81.285 80.866 81.86 0.059929 135 38 5 0 0 0 0.098164 1 45063 45063 43.858 1.7637 1 132710000 78877 9690 52893 54007 91564 91564 0.00475207383169618 YNTLVARSE 9 Unmodified _YNTLVARSE_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2369384765625 2 526.772188 1051.52982 1.0041 0.00052892 3.0152 0.0015883 4.0193 0.0021172 526.773679756687 42.919 0.14978 42.919 42.816 42.966 0 13 7 2 0 0 0 0.18521 1 23278 23278 16.942 10.219 1 4521100 78878 6354 52894 54008 91565 91565 0.006119645752278302 YNTQRSMM 8 Unmodified _YNTQRSMM_ 0 0 0 nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-2|SON nc|ENSG00000159140|P18583-2|SON MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 515.7254638671875 2 515.725869 1029.43719 NaN NaN NaN NaN NaN NaN NaN 77.291 1 76.809 76.309 77.309 -0.4826 0 0 0 0.97444 1 42313 42313 0.79363 0 1 78879 16309 52895 54009 91566 91566 -0.07635579754150967 YNTSLSLIF 9 Unmodified _YNTSLSLIF_ 0 0 0 ENSG00000143127|ENST00000369304|ITGA10;nc|ENSG00000143127|O75578-3|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 ENSG00000143127|ENST00000369304|ITGA10 MSMS AL20221201_MKP_PDAC_01 4 529.2833862304688 2 529.281857 1056.54916 NaN NaN NaN NaN NaN NaN NaN 102.55 1 96.375 95.875 96.875 -6.1757 0 0 0 0.29524 1 68812 68812 25.399 2.2509 1 78880 5465 52896 54010 91567 91567 0.02314920866160719 YNTSNPLHAL 10 Unmodified _YNTSNPLHAL_ 0 0 0 ENST00000554257.1_1_14:38368438-38371223:-|nuORF ENST00000554257.1_1_14:38368438-38371223:-|nuORF ENST00000554257.1_1_14:38368438-38371223:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.1931457519531 3 377.192734 1128.55637 -0.25856 -9.7528E-05 1.0175 0.0003838 0.75896 0.00028627 377.1931461468659 34.058 0.37754 33.867 33.643 34.02 -0.19132 33 14 3 0 0 0 0.46514 1 17751 17751 15.739 0.78146 1 4874400 78881 15205 52897 54011 91568 91568 -0.002763465334510329 YNTSNPLHAL 10 Unmodified _YNTSNPLHAL_ 0 0 0 ENST00000554257.1_1_14:38368438-38371223:-|nuORF ENST00000554257.1_1_14:38368438-38371223:-|nuORF ENST00000554257.1_1_14:38368438-38371223:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 377.192734 1128.55637 -0.61187 -0.00023079 0.43113 0.00016262 -0.18074 -6.8173E-05 377.19290156251117 33.904 0.27897 33.904 33.765 34.044 0 0.018607 -0.00033971 NaN 15.739 34 13 3 NaN NaN NaN NaN 0 NaN NaN 0 15495000 78882 15205 52897 54011 -0.002763465334510329 YNVHSDNKL 9 Unmodified _YNVHSDNKL_ 0 0 0 nc|ENSG00000118564|Q9UKA1-2|FBXL5;ENSG00000118564|ENST00000341285|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 nc|ENSG00000118564|Q9UKA1-2|FBXL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2662963867188 2 545.269813 1088.52507 0.19075 0.00010401 -1.1342 -0.00061847 -0.94349 -0.00051446 545.7722798582436 94.442 0.27281 94.021 93.874 94.146 -0.42043 24 14 2 0 0 0 0.58145 1 51570 51570 4.3292 0 1 648760 78883 3381 52898 54012 91569 91569 -0.015649195675223382 YNVIYDDNGL 10 Unmodified _YNVIYDDNGL_ 0 0 0 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 ENSG00000134627|ENST00000299001|PIWIL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2755737304688 2 593.274761 1184.53497 0.074941 4.4461E-05 0.44034 0.00026124 0.51528 0.00030571 593.2751201258382 80.326 0.31311 80.326 80.138 80.452 0 37 15 3 0 0 0 0.69064 1 44660 44660 3.9444 0.3479 1 1971100 78884 4625 52899 54013 91570 91570 -0.04991776352812849 YNVNLFLYFIS 11 Unmodified _YNVNLFLYFIS_ 0 0 0 REV__ENST00000486274.5_1_3:100013980-100014049:+|nuORF REV__ENST00000486274.5_1_3:100013980-100014049:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 464.9121398925781 3 464.911456 1391.71254 NaN NaN NaN NaN NaN NaN NaN 44.327 1 44.305 43.805 44.805 -0.022064 0 0 0 0.93815 1 23782 23782 3.8459 0 1 + 78885 27798 52900 54014 91571 91571 0.03235098917184587 YNVPATPDG 9 Unmodified _YNVPATPDG_ 0 0 0 ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A ENSG00000198785|ENST00000361820|GRIN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 933.4326782226562 1 933.431238 932.423961 0.58728 0.00054819 0.44255 0.00041309 1.0298 0.00096128 933.4316964387345 60.957 0.31222 60.957 60.811 61.123 0 20 12 2 0 0 0 0.55144 1 34078 34078 4.3292 1.44 1 1029100 78886 10150 52901 54015 91572 91572 -0.044953712702408666 YNVSDRSHIF 10 Unmodified _YNVSDRSHIF_ 0 0 0 ENST00000530883.1_2_19:56289199-56290240:+|nuORF ENST00000530883.1_2_19:56289199-56290240:+|nuORF ENST00000530883.1_2_19:56289199-56290240:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.3006591796875 2 619.301644 1236.58874 NaN NaN NaN NaN NaN NaN NaN 63.904 1 63.419 62.919 63.919 -0.48512 0 0 0 0.92825 1 34859 34859 6.7232 0.99131 1 78887 14897 52902 54016 91573 91573 -0.020095591304425398 YNVSLWEM 8 Unmodified _YNVSLWEM_ 0 0 0 REV__ENSG00000243910|ENST00000490341|TUBA4B REV__ENSG00000243910|ENST00000490341|TUBA4B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7632446289062 2 521.239135 1040.46372 0.63594 0.00033148 -4.3952 -0.0022909 -3.7592 -0.0019594 521.236833758878 74.857 0.40936 74.381 74.087 74.496 -0.47588 26 16 2 0 0 0 8.7369 1 40890 40890 7.9102 1.7044 1 796440 + 78888 24478 52903 54017 91574 91574 -0.05489567591166633 YNVSTGFPD 9 Unmodified _YNVSTGFPD_ 0 0 0 REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L REV__nc|ENSG00000121486|Q7Z2T5-2|TRMT1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2248229980469 2 500.224539 998.434526 1.2126 0.00060657 2.1069 0.0010539 3.3195 0.0016605 500.2253846422579 71.789 0.35298 65.613 65.443 65.796 -6.1757 32 19 2 0 0 0 0.32871 1 46933 46933 15.847 0 1 38841000 + 78889 19296 52904 54018 91575 91575 -0.06475388615808697 YNVYQHDEL 9 Unmodified _YNVYQHDEL_ 0 0 0 nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7 nc|ENSG00000079150|Q9Y680-3|FKBP7 nc|ENSG00000079150|Q9Y680-3|FKBP7 MSMS AL20221201_MKP_PDAC_01 4 394.1819152832031 3 394.180494 1179.51965 NaN NaN NaN NaN NaN NaN NaN 21.392 1 18.657 18.157 19.157 -2.7348 0 0 0 0.7453 1 11451 11451 4.897 2.1618 1 78890 1264 52905 54019 91576 91576 -0.06292643150004551 YNWMSWLL 8 Unmodified _YNWMSWLL_ 0 0 0 nc|ENSG00000101307|Q5TFQ8|SIRPB1;ENST00000448467.1_1_22:30939341-30940067:+|nuORF;ENSG00000101307|ENST00000381605|SIRPB1;nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA nc|ENSG00000101307|Q5TFQ8|SIRPB1 nc|ENSG00000101307|Q5TFQ8|SIRPB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7667236328125 2 556.76532 1111.51609 0.43719 0.00024341 1.4103 0.00078518 1.8475 0.0010286 556.7666241180343 83.603 0.39901 83.603 83.417 83.816 0 57 21 5 0 0 0 0.80143 1 46331 46331 5.7604 1.0044 1 1216200 78891 16091 52906 54020 91577 91577 -0.03520984457554732 YNWNDCYI 8 Unmodified _YNWNDCYI_ 0 0 0 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 364.1470642089844 3 364.148137 1089.42258 NaN NaN NaN NaN NaN NaN NaN 73.298 1 73.298 72.798 73.798 0 0 0 0 0.97444 1 40804 40804 1.6526 0.17072 1 78892 5149 52907 54021 91578 91578 -0.1185532863064509 YNWVTTPTTF 10 Unmodified _YNWVTTPTTF_ 0 0 0 nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000099715|Q9BZA8|PCDH11Y;nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;ENSG00000102290|ENST00000682573|PCDH11X nc|ENSG00000099715|Q9BZA8-3|PCDH11Y nc|ENSG00000099715|Q9BZA8-3|PCDH11Y MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 614.7925415039062 2 615.295496 1228.57644 0.44829 0.00027583 -2.2698 -0.0013966 -1.8215 -0.0011207 615.2939583580531 73.198 0.36079 73.24 73.108 73.469 0.041725 24 16 2 0 0 0 0.22811 1 40302 40302 14.838 0 1 2744900 78893 1702 52908 54022 91579 91579 -0.028705955935265592 YNYCRRDI 8 Unmodified _YNYCRRDI_ 0 0 0 REV__ENSG00000117151|ENST00000370630|CTBS REV__ENSG00000117151|ENST00000370630|CTBS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2579956054688 2 551.758558 1101.50256 0.53447 0.0002949 2.6934 0.0014861 3.2279 0.001781 552.2601456224736 90.332 0.26493 89.83 89.661 89.926 -0.50171 19 11 2 0 0 0 0.80232 2 49328 49328;49353 5.2307 0.90143 1 642540 + 78894 19087 52909 54023 91580;91581 91580 -0.04412842236797587 YNYNWYWF 8 Unmodified _YNYNWYWF_ 0 0 0 REV__ENSG00000106392|ENST00000436587|C1GALT1 REV__ENSG00000106392|ENST00000436587|C1GALT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 419.178466796875 3 419.178425 1254.51345 0.40427 0.00016946 1.7 0.00071262 2.1043 0.00088209 419.17928762254996 38.752 0.23819 38.752 38.62 38.858 0 22 10 3 0 0 0 0.80975 1 20760 20760 0.45834 0 1 1442200 + 78895 18504 52910 54024 91582 91582 -0.10363116590883692 YNYNWYWFTRP 11 Unmodified _YNYNWYWFTRP_ 0 0 0 REV__ENSG00000106392|ENST00000436587|C1GALT1 REV__ENSG00000106392|ENST00000436587|C1GALT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 805.36474609375 2 805.364776 1608.715 NaN NaN NaN NaN NaN NaN NaN 38.857 1 38.857 38.357 39.357 0 0 0 0 0.9435 1 20782 20782 0 0 1 + 78896 18504 52911 54025 91583 91583 -0.06501052625185366 YNYRWMIKE 9 Unmodified _YNYRWMIKE_ 0 0 0 REV__ENSG00000218336|ENST00000511685|TENM3 REV__ENSG00000218336|ENST00000511685|TENM3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8826599121094 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 27.492 1 27.521 27.021 28.021 0.028664 0 0 0 0.85852 1 14288 14288 0.20686 0.066965 1 + 78897 24352 52912 54026 91584 91584 -0.016068539630396117 YNYYIIIIIII 11 Unmodified _YNYYIIIIIII_ 0 0 0 ENST00000464356.6_2_1:156437035-156437317:-|nuORF ENST00000464356.6_2_1:156437035-156437317:-|nuORF ENST00000464356.6_2_1:156437035-156437317:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.9530029296875 3 471.951252 1412.83193 3.052 0.0014404 -0.40992 -0.00019346 2.6421 0.0012469 471.9508010528997 99.674 0.32559 99.637 99.529 99.855 -0.036301 16 11 2 0 0 0 0.74429 1 55365 55365 0.094841 0 1 4879800 78898 13716 52913 54027 91585 91585 0.14202292541926909 YPAAKRVKL 9 Unmodified _YPAAKRVKL_ 0 0 0 nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC nc|ENSG00000136997|P01106-1|MYC nc|ENSG00000136997|P01106-1|MYC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3291625976562 2 523.329476 1044.6444 0.047273 2.4739E-05 0.56752 0.000297 0.61479 0.00032174 523.3297898059152 20.125 0.33934 20.135 19.897 20.236 0.010553 27 17 2 0 0 0 0.2143 2 10178 10178;10283 21.747 19.902 1 894410 78899 4892 52914 54028 91586;91587 91586 0.12386318847848088 YPAAKRVKL 9 Unmodified _YPAAKRVKL_ 0 0 0 nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC nc|ENSG00000136997|P01106-1|MYC nc|ENSG00000136997|P01106-1|MYC MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.32958984375 2 523.329476 1044.6444 0.40562 0.00021227 -0.25481 -0.00013335 0.1508 7.892E-05 523.3293858804725 22.74 0.57119 19.962 19.632 20.203 -2.7784 96 38 3 0 0 0 0.0095811 3 12250 12140;12250;12363 81.613 66.775 1 19925000 78900 4892 52914 54028 91588;91589;91590 91589 0.12386318847848088 YPAAPAAL 8 Unmodified _YPAAPAAL_ 0 0 0 REV__ENSG00000183741|ENST00000407418|CBX6 REV__ENSG00000183741|ENST00000407418|CBX6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.1845397949219 2 387.213246 772.41194 0.47685 0.00018464 -0.43887 -0.00016993 0.037979 1.4706E-05 387.2131164543262 88.282 0.39835 87.778 87.602 88 -0.50423 30 17 2 0 0 0 0.81107 1 48193 48193 0 0 1 760230 + 78901 23373 52915 54029 91591 91591 0.01663056777215388 YPAAPLPGF 9 Unmodified _YPAAPLPGF_ 0 0 0 ENSG00000108479|ENST00000588479|GALK1;ENST00000592494.1_1_17:73759392-73761232:-|nuORF ENSG00000108479|ENST00000588479|GALK1 ENSG00000108479|ENST00000588479|GALK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 466.7465515136719 2 466.747453 931.480354 0.66417 0.00031 -1.1376 -0.00053099 -0.47346 -0.00022099 466.74676363634234 75.028 0.25488 74.551 74.375 74.63 -0.47714 15 10 2 0 0 0 0.22317 1 41070 41070 20.871 11.524 1 1102500 78902 2575 52916 54030 91592 91592 0.0118730135708347 YPAAVPQAL 9 Unmodified _YPAAVPQAL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 929.5087890625 1 929.509094 928.501818 0.84215 0.00078278 -1.7657 -0.0016413 -0.9236 -0.0008585 929.5074758670644 54.76 0.25496 54.76 54.597 54.852 0 15 10 2 0 0 0 0.026094 1 30373 30373 57.471 21.427 1 2046500 78903 4453 52917 54031 91593 91593 0.034706863857991266 YPAAVPQAL 9 Unmodified _YPAAVPQAL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2588195800781 2 465.258185 928.501818 0.29647 0.00013794 -1.1215 -0.0005218 -0.82506 -0.00038386 465.25724139215544 55.332 0.42082 54.854 54.691 55.112 -0.47798 35 19 3 0 0 0 0.023761 1 30003 30003 59.795 12.874 1 3757100 78904 4453 52917 54031 91594 91594 0.034706863857991266 YPAAVPQAL 9 Unmodified _YPAAVPQAL_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2586364746094 2 465.258185 928.501818 1.7599 0.00081879 0.24611 0.00011451 2.006 0.00093329 465.2581859740686 62.51 0.38807 56.334 56.156 56.544 -6.1757 42 19 3 0 0 0 0.016494 1 40293 40293 67.035 13.46 1 27609000 78905 4453 52917 54031 91595 91595 0.034706863857991266 YPADFNIQY 9 Unmodified _YPADFNIQY_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7617797851562 2 565.761289 1129.50803 0.24242 0.00013715 -0.40111 -0.00022693 -0.15868 -8.9778E-05 565.7612073591038 64.637 0.86796 64.637 64.301 65.169 0 100 41 3 0 0 0 0.10734 3 36083 35972;36083;36185 32.305 17.467 1 4535800 78906 2218 52918 54032 91596;91597;91598 91597 -0.05154840173327102 YPADFNIQY 9 Unmodified _YPADFNIQY_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.76171875 2 565.761289 1129.50803 0.37879 0.0002143 -0.0030416 -1.7208E-06 0.37575 0.00021258 565.7611562770002 65.438 0.80405 64.954 64.533 65.337 -0.48428 80 36 3 0 0 0 0.031062 3 35669 35558;35669;35777 54.774 37.831 1 6390600 78907 2218 52918 54032 91599;91600;91601 91600 -0.05154840173327102 YPADFNIQY 9 Unmodified _YPADFNIQY_ 0 0 0 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 ENSG00000104613|ENST00000397977|INTS10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.7633056640625 2 565.761289 1129.50803 1.2024 0.00068024 -0.06496 -3.6752E-05 1.1374 0.00064349 565.7610544685976 72.001 0.65976 65.825 65.52 66.179 -6.1757 80 35 3 0 0 0 0.019303 3 46954 46954;47094;47228 64.236 41.088 1 85627000 78908 2218 52918 54032 91602;91603;91604 91602 -0.05154840173327102 YPAEITLTW 9 Unmodified _YPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2824096679688 2 547.281857 1092.54916 0.28078 0.00015367 0.66853 0.00036587 0.94931 0.00051954 547.2819640251464 85.061 0.35854 85.061 84.91 85.269 0 25 19 2 0 0 0 0.55144 1 47144 47144 4.3292 0.73274 1 909770 78909 10298;10315;10306;10398;16517;10636 52919 54033 91605 91605 0.006589208661353041 YPAEITLTW 9 Unmodified _YPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2814331054688 2 547.281857 1092.54916 0.38217 0.00020916 -0.77254 -0.0004228 -0.39037 -0.00021364 547.281389859963 85.556 0.65999 85.055 84.835 85.495 -0.5015 114 49 3 0 0 0 0.023164 3 46823 46715;46823;46929 60.39 40.951 1 16221000 78910 10298;10315;10306;10398;16517;10636 52919 54033 91606;91607;91608 91607 0.006589208661353041 YPAEITLTW 9 Unmodified _YPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.7833251953125 2 547.281857 1092.54916 -0.19564 -0.00010707 3.2292 0.0017673 3.0335 0.0016602 547.2842084051397 85.022 0.53931 85.085 84.954 85.493 0.063171 29 21 2 0 0 0 0.052168 1 47065 47065 44.407 29.569 1 17878000 78911 10298;10315;10306;10398;16517;10636 52919 54033 91609 91609 0.006589208661353041 YPAEITLTW 9 Unmodified _YPAEITLTW_ 0 0 0 nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000494367.1_1_6:29976031-29977313:+|nuORF nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000206341|P01893|HLA-H;ENSG00000234745|ENST00000412585|HLA-B;ENSG00000204592|ENST00000376630|HLA-E;ENSG00000206503|ENST00000376809|HLA-A nc|ENSG00000204525|P10321-2|HLA-C MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.281982421875 2 547.281857 1092.54916 0.099576 5.4496E-05 0.61957 0.00033908 0.71915 0.00039358 547.2820230572892 93.247 1.5159 87.071 86.382 87.898 -6.1757 398 98 6 0 0 0 0.013472 7 61724 61340;61464;61593;61724;61847;61978;62117 70.716 51.277 1 803710000 78912 10298;10315;10306;10398;16517;10636 52919 54033 91610;91611;91612;91613;91614;91615;91616 91613 0.006589208661353041 YPAERKQAL 9 Unmodified _YPAERKQAL_ 0 0 0 ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT ENSG00000184575|ENST00000332707|XPOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.2013854980469 3 359.201341 1074.58219 -0.51693 -0.00018568 0.79438 0.00028534 0.27745 9.9659E-05 359.2016758351674 18.251 0.13545 18.251 18.189 18.324 0 45 21 3 0 0 0 0.39143 1 9058 9058 12.873 2.0731 1 1530600 78913 9273 52920 54034 91617 91617 0.047885477088584594 YPAESPDYF 9 Unmodified _YPAESPDYF_ 0 0 0 ENSG00000115392|ENST00000233741|FANCL;nc|ENSG00000115392|Q9NW38-2|FANCL ENSG00000115392|ENST00000233741|FANCL ENSG00000115392|ENST00000233741|FANCL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2171630859375 2 544.732197 1087.44984 0.51425 0.00028013 -0.67296 -0.00036658 -0.15871 -8.6456E-05 544.73107051279 53.675 0.31389 53.675 53.525 53.839 0 25 14 2 0 0 0 0.19613 1 29739 29739 7.9102 0 1 3336500 78914 3119 52921 54035 91618 91618 -0.09038521818615664 YPAESVLAY 9 Unmodified _YPAESVLAY_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7535705566406 2 506.752933 1011.49131 0.60329 0.00030572 -0.44736 -0.0002267 0.15592 7.9015E-05 506.7526670255376 57.988 0.61227 57.988 57.754 58.366 0 71 19 5 0 0 0 0.03327 2 32198 32198;32301 53.576 30.427 1 56811000 78915 8942 52922 54036 91619;91620 91619 -0.01397341059282553 YPAESVLAY 9 Unmodified _YPAESVLAY_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.7529296875 2 506.752933 1011.49131 -0.091023 -4.6126E-05 0.054337 2.7535E-05 -0.036686 -1.8591E-05 506.7529789671637 58.551 0.33081 58.06 57.901 58.232 -0.49079 35 15 3 0 0 0 0.03327 1 31833 31833 53.576 28.176 1 8475900 78916 8942 52922 54036 91621 91621 -0.01397341059282553 YPAESVLAY 9 Unmodified _YPAESVLAY_ 0 0 0 ENSG00000181019|ENST00000320623|NQO1;nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENST00000569118.1_1_16:69751908-69760342:-|nuORF ENSG00000181019|ENST00000320623|NQO1 ENSG00000181019|ENST00000320623|NQO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.7528381347656 2 506.752933 1011.49131 0.64852 0.00032864 0.1965 9.9575E-05 0.84502 0.00042822 506.7527800355277 65.961 0.59135 59.785 59.525 60.117 -6.1757 111 34 4 0 0 0 0.019979 2 42842 42842;42972 63.563 25.589 1 119670000 78917 8942 52922 54036 91622;91623 91622 -0.01397341059282553 YPAGFPMGY 9 Oxidation (M) _YPAGFPM(Oxidation (M))GY_ YPAGFPM(1)GY YPAGFPM(67)GY 0 0 1 ENSG00000152102|ENST00000389915|FAM168B;nc|ENSG00000152102|A1KXE4-2|FAM168B ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.720458984375 2 509.720578 1017.4266 0.060331 3.0752E-05 0.6241 0.00031812 0.68443 0.00034887 509.7208322836804 55.202 0.72083 54.724 54.328 55.048 -0.47798 84 34 3 0 0 0 0.016115 1 29906 29906 67.413 52.831 1 4353800 78918 6163 52923 54037 91624 91624 1102 -0.08141239136921286 YPAGFPMGY 9 Oxidation (M) _YPAGFPM(Oxidation (M))GY_ YPAGFPM(1)GY YPAGFPM(56)GY 0 0 1 ENSG00000152102|ENST00000389915|FAM168B;nc|ENSG00000152102|A1KXE4-2|FAM168B ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7218017578125 2 509.720578 1017.4266 0.49779 0.00025374 2.2628 0.0011534 2.7606 0.0014071 509.72157433515054 61.959 0.52138 55.783 55.499 56.021 -6.1757 36 28 2 0 0 0 0.028712 1 39939 39939 56.048 34.302 1 36712000 78919 6163 52923 54037 91625 91625 1102 -0.08141239136921286 YPAGFPMGY 9 Unmodified _YPAGFPMGY_ 0 0 0 ENSG00000152102|ENST00000389915|FAM168B;nc|ENSG00000152102|A1KXE4-2|FAM168B ENSG00000152102|ENST00000389915|FAM168B ENSG00000152102|ENST00000389915|FAM168B MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.72412109375 2 501.723121 1001.43169 1.0417 0.00052263 -0.12064 -6.0527E-05 0.92104 0.00046211 501.7229206504658 75.016 0.64721 68.84 68.454 69.102 -6.1757 58 34 2 0 0 0 0.016115 2 49061 48933;49061 67.413 46.542 1 10325000 78920 6163 52923 54038 91626;91627 91627 -0.06896935274312455 YPAGHSFIL 9 Unmodified _YPAGHSFIL_ 0 0 0 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 ENSG00000127362|ENST00000247879|TAS2R3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 502.8108215332031 2 502.763635 1003.51272 0.27051 0.000136 -0.19953 -0.00010031 0.070986 3.5689E-05 502.7635983328654 69.923 0.32521 69.954 69.784 70.11 0.030922 32 16 3 0 0 0 0.13712 1 38499 38499 30.225 7.0764 1 8663700 78921 4001 52924 54039 91628 91628 0.01110088760083272 YPAHIEDIDY 10 Unmodified _YPAHIEDIDY_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.2835693359375 2 618.282586 1234.55062 0.24959 0.00015432 0.42477 0.00026263 0.67436 0.00041694 618.2829233513041 46.972 0.24248 46.972 46.839 47.081 0 18 11 2 0 0 0 0.063761 1 25694 25694 54.774 34.359 1 7266600 78922 555 52925 54040 91629 91629 -0.05727489835749111 YPAHIEDIDY 10 Unmodified _YPAHIEDIDY_ 0 0 0 ENSG00000025293|ENST00000374012|PHF20;nc|ENSG00000025293|Q9BVI0-2|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF ENSG00000025293|ENST00000374012|PHF20 ENSG00000025293|ENST00000374012|PHF20 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.7823486328125 2 618.282586 1234.55062 0.47834 0.00029575 1.7105 0.0010576 2.1888 0.0013533 618.2845471325212 53.314 0.22248 47.51 47.419 47.642 -5.8042 24 14 2 0 0 0 0.1028 1 33686 33686 46.021 25.567 1 11194000 78923 555 52925 54040 91630 91630 -0.05727489835749111 YPAHMYQVY 9 Oxidation (M) _YPAHM(Oxidation (M))YQVY_ YPAHM(1)YQVY YPAHM(40)YQVY 0 0 1 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.2601318359375 2 594.263142 1186.51173 -0.43987 -0.0002614 -1.9512 -0.0011595 -2.3911 -0.0014209 594.2622703228137 33.448 0.21623 33.448 33.264 33.481 0 25 11 3 0 0 0 0.068777 1 17499 17499 40.449 29.625 1 20262000 78924 4557 52926 54041 91631 91631 832 -0.07406493671123826 YPAHMYQVY 9 Oxidation (M) _YPAHM(Oxidation (M))YQVY_ YPAHM(1)YQVY YPAHM(50)YQVY 0 0 1 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2637329101562 2 594.263142 1186.51173 -0.17813 -0.00010586 0.69774 0.00041464 0.51961 0.00030878 594.2634911684274 33.574 0.54338 33.414 33.078 33.622 -0.15918 70 22 4 0 0 0 0.040472 1 17500 17500 49.669 36.626 1 5056800 78925 4557 52926 54041 91632 91632 832 -0.07406493671123826 YPAHMYQVY 9 Oxidation (M) _YPAHM(Oxidation (M))YQVY_ YPAHM(1)YQVY YPAHM(47)YQVY 0 0 1 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.2626953125 2 594.263142 1186.51173 0.91669 0.00054475 -3.2811 -0.0019498 -2.3644 -0.0014051 594.2606208380124 37.627 0.29017 33.258 33.091 33.381 -4.3689 39 17 3 0 0 0 0.045537 1 22072 22072 46.921 28.775 1 18970000 78926 4557 52926 54041 91633 91633 832 -0.07406493671123826 YPAIRYLLY 9 Unmodified _YPAIRYLLY_ 0 0 0 ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3 ENST00000471523.1_1_1:155679570-155695881:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3304443359375 2 586.329142 1170.64373 0.54657 0.00032047 0.17866 0.00010475 0.72522 0.00042522 586.3293822430863 73.961 0.4355 74.005 73.843 74.279 0.043983 43 19 3 0 0 0 0.022193 2 40775 40775;40894 61.357 45.51 1 2315300 78927 4435 52927 54042 91634;91635 91634 0.06523479408133426 YPAIRYLLY 9 Unmodified _YPAIRYLLY_ 0 0 0 ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3 ENST00000471523.1_1_1:155679570-155695881:+|nuORF ENST00000471523.1_1_1:155679570-155695881:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.32958984375 2 586.329142 1170.64373 0.47173 0.00027659 0.54671 0.00032055 1.0184 0.00059714 586.8311437829764 93.536 0.26105 87.36 87.26 87.521 -6.1757 24 15 2 0 0 0 0.0082281 1 61887 61887 92.822 54.671 1 10060000 78928 4435 52927 54042 91636 91636 0.06523479408133426 YPAKVEAII 9 Unmodified _YPAKVEAII_ 0 0 0 REV__ENST00000396270.3_1_12:69099864-69100302:+|nuORF REV__ENST00000396270.3_1_12:69099864-69100302:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 502.2954406738281 2 502.294768 1002.57498 0.26388 0.00013255 0.0025508 1.2812E-06 0.26643 0.00013383 502.2948486854177 79.26 0.29659 78.774 78.596 78.893 -0.48596 24 12 3 0 0 0 0.51218 1 43383 43383 6.7232 0 1 650550 + 78929 26503 52928 54043 91637 91637 0.07379815108436105 YPALKGVNTVF 11 Unmodified _YPALKGVNTVF_ 0 0 0 ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.83740234375 2 604.837331 1207.66011 0.24337 0.0001472 0.68254 0.00041282 0.92591 0.00056002 604.8376614309699 61.566 0.33588 61.533 61.355 61.691 -0.032787 51 16 4 0 0 0 0.028752 2 33569 33569;33680 55.503 28.28 1 16320000 78930 5843 52929 54044 91638;91639 91638 0.06458560574219518 YPALKGVNTVF 11 Unmodified _YPALKGVNTVF_ 0 0 0 ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL ENSG00000147383|ENST00000370274|NSDHL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.7687377929688 2 604.837331 1207.66011 0.42692 0.00025822 -1.5948 -0.00096459 -1.1679 -0.00070638 604.8373612492982 69.315 0.57208 63.14 62.822 63.394 -6.1757 54 31 2 0 0 0 0.28226 1 45327 45327 17.113 4.8722 1 28461000 78931 5843 52929 54044 91640 91640 0.06458560574219518 YPALQRAQL 9 Unmodified _YPALQRAQL_ 0 0 0 nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.8699645996094 3 353.869703 1058.58728 -0.45253 -0.00016013 0.19413 6.8697E-05 -0.25839 -9.1438E-05 353.86975003549526 20.029 0.28075 20.058 19.921 20.201 0.028357 41 13 4 0 0 0 0.15471 1 10094 10094 27.629 8.3718 1 16862000 78932 3042 52930 54045 91641 91641 0.0603285157146729 YPALQRAQL 9 Unmodified _YPALQRAQL_ 0 0 0 nc|ENSG00000114487|Q86VD1-2|MORC1;ENSG00000114487|ENST00000232603|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 nc|ENSG00000114487|Q86VD1-2|MORC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 353.869703 1058.58728 -0.42409 -0.00015007 0.60729 0.0002149 0.1832 6.483E-05 353.87009224624245 20.206 0.25695 20.206 20.069 20.326 0 0.08591 -4.3717E-05 NaN 27.629 42 17 3 NaN NaN NaN NaN 0 NaN NaN 0 7084400 78933 3042 52930 54045 0.0603285157146729 YPALRALA 8 Unmodified _YPALRALA_ 0 0 0 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 ENSG00000232434|ENST00000436881|AJM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 437.7601318359375 2 437.760895 873.507237 NaN NaN NaN NaN NaN NaN NaN 6.0548 1 5.9773 5.4773 6.4773 -0.07749 0 0 0 0.97444 1 2988 2988 0 0 1 78934 10627 52931 54046 91642 91642 0.06542409968255924 YPALVVEKM 9 Oxidation (M) _YPALVVEKM(Oxidation (M))_ YPALVVEKM(1) YPALVVEKM(66) 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2860107421875 2 533.286085 1064.55762 -0.25468 -0.00013582 -0.81308 -0.00043361 -1.0678 -0.00056943 533.2856465935843 41.403 0.53089 41.403 41.137 41.668 0 48 26 3 0 0 0 0.017075 2 22281 22281;22417 66.457 35.82 1 5690000 78935 10766 52932 54047 91643;91644 91643 1726 0.02792151511107477 YPALVVEKM 9 Oxidation (M) _YPALVVEKM(Oxidation (M))_ YPALVVEKM(1) YPALVVEKM(42) 0 0 1 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MSMS AL20221201_MKP_PDAC_01 4 533.2848510742188 2 533.286085 1064.55762 NaN NaN NaN NaN NaN NaN NaN 46.458 1 41.377 40.877 41.877 -5.0805 0 0 0 0.10661 1 28697 28697 41.956 19.219 1 78936 10766 52932 54047 91645 91645 1726 0.02792151511107477 YPANERFWYF 10 Unmodified _YPANERFWYF_ 0 0 0 nc|ENSG00000152061|Q5R372-4|RABGAP1L;nc|ENSG00000152061|Q5R372|RABGAP1L;nc|ENSG00000152061|Q5R372-3|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L;nc|ENSG00000152061|Q5R372-2|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L nc|ENSG00000152061|Q5R372-4|RABGAP1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 696.8222045898438 2 696.822212 1391.62987 0.24804 0.00017284 0.75782 0.00052806 1.0059 0.0007009 696.8226009308528 76.947 0.27977 76.997 76.848 77.128 0.05011 18 11 2 0 0 0 0.34249 1 42484 42484 24.991 14.191 1 2350400 78937 6160 52933 54048 91646 91646 -0.050277980909640974 YPANKFFLY 9 Unmodified _YPANKFFLY_ 0 0 0 ENST00000392328.5_1_2:191301228-191301342:+|nuORF ENST00000392328.5_1_2:191301228-191301342:+|nuORF ENST00000392328.5_1_2:191301228-191301342:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7997436523438 2 581.800217 1161.58588 0.93038 0.00054129 1.9041 0.0011078 2.8345 0.0016491 581.7991714266452 42.473 0.55026 37.789 37.521 38.072 -4.6846 78 36 3 0 0 0 0.052168 1 25523 25523 44.407 10.005 1 27854000 78938 12669 52934 54049 91647 91647 0.011552174827329509 YPANQGQEVEY 11 Unmodified _YPANQGQEVEY_ 0 0 0 ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF;ENST00000503751.5_1_4:155468160-155471460:-|nuORF ENSG00000171566|ENST00000499023|PLRG1 ENSG00000171566|ENST00000499023|PLRG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2876586914062 2 649.288399 1296.56225 -0.67066 -0.00043545 0.30357 0.0001971 -0.36709 -0.00023835 649.2883004155403 33.827 0.37437 33.827 33.617 33.991 0 38 18 3 0 0 0 0.33405 1 17813 17813 24.991 20.094 1 1696700 78939 8116 52935 54050 91648 91648 -0.07417292812397136 YPAPGLKTF 9 Unmodified _YPAPGLKTF_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.2755432128906 2 497.273835 992.533118 0.24596 0.00012231 3.6496 0.0018149 3.8956 0.0019372 497.2755054155162 48.84 0.14876 48.468 48.35 48.499 -0.37172 12 7 3 0 0 0 0.029718 1 26235 26235 55.503 30.103 1 6987600 78940 8887 52936 54051 91649 91649 0.036552594199065425 YPAPGLKTF 9 Unmodified _YPAPGLKTF_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.275390625 2 497.273835 992.533118 0.44282 0.0002202 -0.40232 -0.00020007 0.0405 2.014E-05 497.2736696964311 48.511 0.29 48.467 48.341 48.631 -0.04369 23 14 2 0 0 0 0.047788 1 26202 26202 45.7 20.3 1 3896800 78941 8887 52936 54051 91650 91650 0.036552594199065425 YPAPGLKTF 9 Unmodified _YPAPGLKTF_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2746276855469 2 497.273835 992.533118 1.2895 0.00064124 -0.26743 -0.00013298 1.0221 0.00050826 497.2729373170983 54.367 0.28955 48.502 48.283 48.572 -5.8653 27 17 2 0 0 0 0.012668 1 34383 34383 72.968 40.662 1 27441000 78942 8887 52936 54051 91651 91651 0.036552594199065425 YPAQGVQQF 9 Unmodified _YPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.2566528320312 2 519.256174 1036.49779 0.67817 0.00035215 0.2795 0.00014513 0.95767 0.00049728 519.2561243619842 42.394 0.51925 42.394 42.125 42.644 0 80 25 4 0 0 0 0.013472 3 22949 22835;22949;23062 70.716 34.589 1 111980000 78943 3070;16132 52937 54052 91652;91653;91654 91653 -0.01899403107904618 YPAQGVQQF 9 Unmodified _YPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2562866210938 2 519.256174 1036.49779 NaN NaN NaN NaN NaN NaN NaN 42.669 1 42.362 41.862 42.862 -0.30682 0 0 0 0.10545 1 22675 22675 42.095 7.9921 1 78944 3070;16132 52937 54052 91655 91655 -0.01899403107904618 YPAQGVQQF 9 Unmodified _YPAQGVQQF_ 0 0 0 nc|ENSG00000114867|Q04637-8|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1 nc|ENSG00000114867|Q04637-9|EIF4G1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2564697265625 2 519.256174 1036.49779 0.72399 0.00037594 -0.082299 -4.2734E-05 0.64169 0.0003332 519.256166682231 49.013 0.53016 43.617 43.371 43.901 -5.3961 84 34 3 0 0 0 0.0086179 3 30630 30497;30630;30771 89.427 59.202 1 151680000 78945 3070;16132 52937 54052 91656;91657;91658 91657 -0.01899403107904618 YPAQITPKM 9 Oxidation (M) _YPAQITPKM(Oxidation (M))_ YPAQITPKM(1) YPAQITPKM(100) 0 0 1 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 ENSG00000167264|ENST00000565263|DUS2 MSMS AL20221201_MKP_PDAC_01 4 532.7760620117188 2 532.775885 1063.53722 NaN NaN NaN NaN NaN NaN NaN 31.558 1 27.863 27.363 28.363 -3.6958 0 0 0 0.0065554 1 17884 17884 100.09 51.745 1 78946 7594 52938 54053 91659 91659 1298 0.007989808513002572 YPARGPRF 8 Unmodified _YPARGPRF_ 0 0 0 nc|ENSG00000063176|Q9NRA0-3|SPHK2;nc|ENSG00000063176|Q9NRA0-2|SPHK2;ENSG00000063176|ENST00000245222|SPHK2;nc|ENSG00000063176|Q9NRA0-5|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 nc|ENSG00000063176|Q9NRA0-3|SPHK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7146911621094 2 482.261594 962.508634 -0.044903 -2.1655E-05 0.35572 0.00017155 0.31081 0.00014989 482.2622020203596 56.308 0.20257 56.308 56.247 56.45 0 11 9 2 0 0 0 8.7369 1 31356 31356 6.3541 0 1 1799100 78947 857 52939 54054 91660 91660 0.02588044057051775 YPARPEVPI 9 Unmodified _YPARPEVPI_ 0 0 0 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 ENSG00000135776|ENST00000344517|ABCB10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2849731445312 2 521.290017 1040.56548 0.18354 9.5677E-05 -1.0139 -0.00052853 -0.83035 -0.00043285 521.2892983885706 58.686 0.40867 58.195 57.901 58.31 -0.49079 56 19 4 0 0 0 0.43463 1 31823 31823 10.824 2.2306 1 17755000 78948 4741 52940 54055 91661 91661 0.0468204682290434 YPARQSLRL 9 Unmodified _YPARQSLRL_ 0 0 0 ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14640508-14674910:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF;ENST00000594807.5_1_19:14640508-14674579:+|nuORF ENSG00000099797|ENST00000215567|TECR ENSG00000099797|ENST00000215567|TECR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.5491333007812 3 368.548852 1102.62473 -0.23713 -8.7395E-05 -0.3115 -0.0001148 -0.54863 -0.0002022 368.54873075684094 32.097 0.31114 32.126 31.988 32.299 0.029743 21 13 2 0 0 0 0.46501 1 16850 16850 9.544 3.3521 1 2807800 78949 1707 52941 54056 91662 91662 0.07751942837080605 YPARRGPQL 9 Unmodified _YPARRGPQL_ 0 0 0 ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40;ENST00000474025.1_1_1:31744094-31762265:-|nuORF ENSG00000060688|ENST00000263694|SNRNP40 ENSG00000060688|ENST00000263694|SNRNP40 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.2015686035156 3 353.201564 1056.58286 0.87131 0.00030775 0.76483 0.00027014 1.6361 0.00057789 353.20168194812743 23.521 0.40731 20.694 20.508 20.915 -2.8273 56 24 3 0 0 0 0.32871 1 12696 12696 10.8 0.72558 1 8616300 78950 830 52942 54057 91663 91663 0.05683387148565089 YPASAGTSL 9 Unmodified _YPASAGTSL_ 0 0 0 ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.7163391113281 2 433.71635 865.418148 -0.30012 -0.00013017 -0.17005 -7.3755E-05 -0.47017 -0.00020392 433.7162594390906 35.214 0.30817 35.214 35.034 35.342 0 25 15 2 0 0 0 0.087258 1 18570 18570 36.044 5.8194 1 5685300 78951 312 52943 54058 91664 91664 -0.019944697818914392 YPASAGTSL 9 Unmodified _YPASAGTSL_ 0 0 0 ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 866.4243774414062 1 866.425424 865.418148 -0.36087 -0.00031267 0.62208 0.00053899 0.26121 0.00022632 866.4257393880847 35.25 0.23442 35.25 35.072 35.306 0 17 11 2 0 0 0 0.0090851 1 18577 18577 85.357 56.87 1 1821300 78952 312 52943 54058 91665 91665 -0.019944697818914392 YPASAGTSL 9 Unmodified _YPASAGTSL_ 0 0 0 ENSG00000005486|ENST00000006777|RHBDD2;nc|ENSG00000005486|Q6NTF9-2|RHBDD2;ENST00000468304.1_1_7:75510799-75517664:+|nuORF;nc|ENSG00000005486|Q6NTF9-3|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 ENSG00000005486|ENST00000006777|RHBDD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.7161865234375 2 433.71635 865.418148 0.81008 0.00035135 -0.022878 -9.9225E-06 0.78721 0.00034142 433.71631448849774 41.198 0.38493 36.59 36.353 36.738 -4.6079 37 23 2 0 0 0 0.0086179 1 24630 24630 89.427 45.02 1 11492000 78953 312 52943 54058 91666 91666 -0.019944697818914392 YPASIVDEPTF 11 Unmodified _YPASIVDEPTF_ 0 0 0 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 ENSG00000214717|ENST00000652001|ZBED1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.8008422851562 2 619.800611 1237.58667 0.50795 0.00031483 -1.3159 -0.00081557 -0.80791 -0.00050074 619.7997955593113 67.633 0.20568 67.633 67.56 67.766 0 16 9 2 0 0 0 0.33405 1 37727 37727 24.991 12.75 1 977390 78954 10506 52944 54059 91667 91667 -0.022620326589049 YPASLHAQCF 10 Carbamidomethyl (C) _YPASLHAQC(Carbamidomethyl (C))F_ YPASLHAQC(1)F YPASLHAQC(86)F 0 1 0 nc|ENSG00000157110|Q93062-3|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS nc|ENSG00000157110|Q93062-3|RBPMS MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.2739868164062 2 597.274041 1192.53353 1.0871 0.00064929 0.19899 0.00011885 1.2861 0.00076815 597.2743155495062 47.576 0.39105 42.342 42.142 42.534 -5.2339 37 22 2 0 0 0 0.01074 1 29481 29481 86.332 56.107 1 16768000 78955 16296 52945 54060 91668 91668 1023 -0.05503688922567562 YPASSSVF 8 Unmodified _YPASSSVF_ 0 0 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 857.4049682617188 1 857.40396 856.396684 0.054363 4.6611E-05 0.43992 0.00037719 0.49428 0.0004238 857.4044634994274 46.848 0.51778 46.848 46.585 47.103 0 39 24 2 0 0 0 0.17881 2 25635 25526;25635 78.445 37.996 1 3571300 78956 10826 52946 54061 91669;91670 91670 -0.037258548106024136 YPASSSVF 8 Unmodified _YPASSSVF_ 0 0 0 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 ENSG00000260027|ENST00000239165|HOXB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 857.4046020507812 1 857.40396 856.396684 1.0799 0.00092592 -0.4788 -0.00041053 0.60111 0.00051539 857.4033106511349 54.033 0.4724 48.168 47.964 48.437 -5.8653 44 27 2 0 0 0 0.086157 2 34272 34140;34272 104.31 37.275 1 10639000 78957 10826 52946 54061 91671;91672 91672 -0.037258548106024136 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2764587402344 2 496.276575 990.538597 0.19346 9.6012E-05 0.77643 0.00038532 0.96989 0.00048133 496.27680808127144 62.772 0.50151 62.772 62.506 63.008 0 52 21 3 0 0 0 0.023164 2 34937 34937;35040 60.39 18.295 1 8970600 78958 1955 52947 54062 91673;91674 91673 0.04294938211717181 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 991.5447998046875 1 991.545874 990.538597 -0.034955 -3.4659E-05 1.444 0.0014318 1.4091 0.0013972 991.5471782432754 62.716 0.30925 62.716 62.611 62.92 0 21 12 2 0 0 0 0.047196 1 34960 34960 46.021 11.619 1 1368900 78959 1955 52947 54062 91675 91675 0.04294938211717181 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.2767639160156 2 496.276575 990.538597 0.41767 0.00020728 0.78082 0.0003875 1.1985 0.00059479 496.2768544806463 63.21 0.53177 62.723 62.46 62.992 -0.48617 63 24 3 0 0 0 0.023164 2 34400 34400;34505 60.39 18.295 1 13633000 78960 1955 52947 54062 91676;91677 91676 0.04294938211717181 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 991.54833984375 1 991.545874 990.538597 0.26986 0.00026757 0.23273 0.00023076 0.50259 0.00049834 991.546281062525 63.164 0.34346 62.678 62.562 62.905 -0.48617 25 15 2 0 0 0 0.019303 2 34432 34432;34531 64.236 22.397 1 1723800 78961 1955 52947 54062 91678;91679 91678 0.04294938211717181 YPASTVQIL 9 Unmodified _YPASTVQIL_ 0 0 0 ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF ENSG00000101361|ENST00000329276|NOP56 ENSG00000101361|ENST00000329276|NOP56 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.2769775390625 2 496.276575 990.538597 0.87867 0.00043606 -0.73621 -0.00036537 0.14245 7.0696E-05 496.2761269112358 70.046 0.48796 63.87 63.615 64.103 -6.1757 60 27 3 0 0 0 0.012148 2 45840 45709;45840 74.423 10.186 1 53096000 78962 1955 52947 54062 91680;91681 91681 0.04294938211717181 YPATGADVAF 10 Unmodified _YPATGADVAF_ 0 0 0 ENSG00000174851|ENST00000376901|YIF1A;ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.2427673339844 2 506.242732 1010.47091 0.80194 0.00040597 -0.17334 -8.7752E-05 0.6286 0.00031822 506.2425237903728 53.739 0.84341 53.739 53.486 54.33 0 95 39 3 0 0 0 0.051739 2 29816 29715;29816 57.471 28.985 1 14427000 78963 8465 52948 54063 91682;91683 91683 -0.033905117191011414 YPATGADVAF 10 Unmodified _YPATGADVAF_ 0 0 0 ENSG00000174851|ENST00000376901|YIF1A;ENST00000474986.2_1_11:66054976-66056456:-|nuORF;ENST00000376899.8_1_11:66054976-66056456:-|nuORF ENSG00000174851|ENST00000376901|YIF1A ENSG00000174851|ENST00000376901|YIF1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2434387207031 2 506.242732 1010.47091 0.98427 0.00049828 0.10943 5.5399E-05 1.0937 0.00055368 506.24276122993746 61.702 0.64637 55.526 55.228 55.875 -6.1757 56 33 2 0 0 0 0.013474 1 39693 39693 81.613 35.592 1 33464000 78964 8465 52948 54063 91684 91684 -0.033905117191011414 YPATIASIDF 10 Unmodified _YPATIASIDF_ 0 0 0 nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2802124023438 2 549.279315 1096.54408 0.22978 0.00012621 0.20348 0.00011177 0.43326 0.00023798 549.2793448583549 78.868 0.97554 78.382 77.971 78.947 -0.48596 98 40 3 0 0 0 0.063761 2 43115 43115;43212 54.774 27.89 1 57302000 78965 8179 52949 54064 91685;91686 91685 -0.00033382996502950846 YPATIASIDF 10 Unmodified _YPATIASIDF_ 0 0 0 nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.279541015625 2 549.279315 1096.54408 0.34914 0.00019178 0.002499 1.3726E-06 0.35164 0.00019315 549.2793129281428 78.329 0.76624 78.382 78.011 78.777 0.052444 90 31 4 0 0 0 0.31022 1 43235 43235 26.884 12.045 1 14373000 78966 8179 52949 54064 91687 91687 -0.00033382996502950846 YPATIASIDF 10 Unmodified _YPATIASIDF_ 0 0 0 nc|ENSG00000205571|Q16637-4|SMN1;nc|ENSG00000205571|Q16637-2|SMN1;nc|ENSG00000205571|Q16637-3|SMN1;ENSG00000205571|ENST00000380743|SMN2;ENSG00000172062|ENST00000380707|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 nc|ENSG00000205571|Q16637-4|SMN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2799682617188 2 549.279315 1096.54408 1.0649 0.00058494 -1.3013 -0.0007148 -0.23643 -0.00012987 549.2789586855821 86.094 0.78854 79.918 79.424 80.213 -6.1757 115 43 4 0 0 0 0.013474 3 56760 56635;56760;56890 81.613 47.211 1 108700000 78967 8179 52949 54064 91688;91689;91690 91689 -0.00033382996502950846 YPATPRSTSQ 10 Unmodified _YPATPRSTSQ_ 0 0 0 nc|ENSG00000022567|Q5BKX6-2|SLC45A4;nc|ENSG00000022567|Q5BKX6|SLC45A4;nc|ENSG00000022567|Q5BKX6-3|SLC45A4;ENSG00000022567|ENST00000517878|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 nc|ENSG00000022567|Q5BKX6-2|SLC45A4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2725219726562 2 554.275095 1106.53564 0.91508 0.00050721 -3.6676 -0.0020328 -2.7525 -0.0015256 554.2715426260852 75.462 1.112 74.985 74.63 75.742 -0.47714 146 53 4 0 0 0 0.44171 1 41320 41320 19.362 0.98885 1 4139200 78968 535 52950 54065 91691 91691 -0.013369369130941777 YPATRGIIDL 10 Unmodified _YPATRGIIDL_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000470782.5_1_17:15935612-15971511:-|nuORF nc|ENSG00000141027|O75376-2|NCOR1 nc|ENSG00000141027|O75376-2|NCOR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.8131713867188 2 559.813856 1117.61316 NaN NaN NaN NaN NaN NaN NaN 59.952 1 59.461 58.961 59.961 -0.49079 0 0 0 0.38764 1 32630 32630 32.037 10.501 1 78969 5298 52951 54066 91692 91692 0.05905701023107213 YPATTPTGM 9 Oxidation (M) _YPATTPTGM(Oxidation (M))_ YPATTPTGM(1) YPATTPTGM(47) 0 0 1 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7156066894531 2 477.715493 953.416433 -0.15453 -7.3823E-05 -0.37093 -0.0001772 -0.52546 -0.00025102 477.715599737186 23.745 0.46772 23.745 23.548 24.016 0 56 23 3 0 0 0 0.045537 2 12094 12094;12191 46.921 28.786 1 1986100 78970 1117 52952 54067 91693;91694 91693 185 -0.062138468621469656 YPATTPTGM 9 Oxidation (M) _YPATTPTGM(Oxidation (M))_ YPATTPTGM(1) YPATTPTGM(71) 0 0 1 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7164916992188 2 477.715493 953.416433 0.55302 0.00026419 -0.088173 -4.2122E-05 0.46485 0.00022207 477.71558638138424 28.13 0.27091 24.982 24.826 25.097 -3.1482 20 14 2 0 0 0 0.013472 1 15631 15631 70.716 42.229 1 5553800 78971 1117 52952 54067 91695 91695 185 -0.062138468621469656 YPATTPTGM 9 Unmodified _YPATTPTGM_ 0 0 0 nc|ENSG00000073921|Q13492-4|PICALM;nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM nc|ENSG00000073921|Q13492-4|PICALM nc|ENSG00000073921|Q13492-4|PICALM MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7177734375 2 469.718036 937.421518 0.80149 0.00037647 -0.62292 -0.0002926 0.17857 8.3876E-05 469.71766397144773 42.864 0.32827 38.179 38.055 38.384 -4.6846 33 20 2 0 0 0 0.013472 1 25954 25954 70.716 38.599 1 10631000 78972 1117 52952 54068 91696 91696 -0.049695429995381346 YPAVWASSDL 10 Unmodified _YPAVWASSDL_ 0 0 0 REV__TBC1D9|p.R59W|1|0.17|ENSG00000109436|chr4:140701570-140701570|G/A|missense_variant REV__TBC1D9|p.R59W|1|0.17|ENSG00000109436|chr4:140701570-140701570|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7698974609375 2 554.769114 1107.52368 0.57238 0.00031754 0.15937 8.8416E-05 0.73176 0.00040596 554.769147529343 67.092 0.58355 66.609 66.355 66.938 -0.48323 57 26 3 0 0 0 0.65502 1 36565 36565 7.9102 1.187 1 7103900 + 78973 30109 52953 54069 91697 91697 -0.025785536562807465 YPCDELLAY 9 Unmodified _YPCDELLAY_ 0 0 0 REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7461547851562 2 543.74425 1085.47395 NaN NaN NaN NaN NaN NaN NaN 65.636 1 65.152 64.652 65.652 -0.48428 0 0 0 0.82015 1 35830 35830 5.2307 0.47466 1 + 78974 26585 52954 54070 91698 91698 -0.06537004656593126 YPCDVEDCEA 10 Unmodified _YPCDVEDCEA_ 0 0 0 ENSG00000126391|ENST00000317568|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;nc|ENSG00000126391|Q9BZ67-2|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 ENSG00000126391|ENST00000317568|FRMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.20361328125 2 572.202089 1142.38963 0.31746 0.00018165 1.1262 0.00064441 1.4437 0.00082606 572.2029568222065 65.459 0.27011 64.974 64.854 65.124 -0.48428 18 12 2 0 0 0 0.70951 1 35723 35723 1.8442 0 1 998460 78975 3945 52955 54071 91699 91699 -0.17587323535644828 YPCFRMSY 8 Unmodified _YPCFRMSY_ 0 0 0 REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2 REV__nc|ENSG00000065621|Q9H4Y5-2|GSTO2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.75244140625 2 533.72788 1065.44121 -0.71045 -0.00037919 -1.2075 -0.00064448 -1.918 -0.0010237 533.7273281403325 32.867 0.31305 32.867 32.695 33.008 0 28 15 2 0 0 0 8.7369 1 17252 17252 12.532 0.89125 1 3086800 + 78976 17384 52956 54072 91700 91700 -0.08889490260435196 YPCPVEDDL 9 Unmodified _YPCPVEDDL_ 0 0 0 ENST00000370828.3_1_X:132445305-132458320:-|nuORF ENST00000370828.3_1_X:132445305-132458320:-|nuORF ENST00000370828.3_1_X:132445305-132458320:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.72607421875 2 525.726058 1049.43756 0.64098 0.00033698 -2.0452 -0.0010752 -1.4042 -0.00073823 525.7250335497067 58.003 0.33465 58.003 57.845 58.179 0 22 13 2 0 0 0 0.2001 1 32255 32255 23.148 6.2061 1 2869500 78977 12346 52957 54073 91701 91701 -0.08517881553325424 YPCQNNKAY 9 Carbamidomethyl (C) _YPC(Carbamidomethyl (C))QNNKAY_ YPC(1)QNNKAY YPC(74)QNNKAY 0 1 0 nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 nc|ENSG00000168615|Q13443-2|ADAM9 MSMS AL20221201_MKP_PDAC_01 4 579.2517700195312 2 579.255848 1156.49714 NaN NaN NaN NaN NaN NaN NaN 21.228 1 18.535 18.035 19.035 -2.693 0 0 0 0.023279 1 11344 11344 74.423 49.023 1 78978 7785 52958 54074 91702 91702 758 -0.07484565819277123 YPCSHPSEE 9 Unmodified _YPCSHPSEE_ 0 0 0 ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF ENSG00000139263|ENST00000320743|LRIG3 ENSG00000139263|ENST00000320743|LRIG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 350.4737548828125 3 350.13953 1047.39676 -0.78686 -0.00027551 1.0662 0.0003733 0.27929 9.7791E-05 350.4742682696177 30.404 0.24128 30.404 30.305 30.546 0 23 11 3 0 0 0 0.39863 1 15804 15804 8.1555 0 1 1648200 78979 5141 52959 54075 91703 91703 -0.12504222872939863 YPCSHPSEE 9 Unmodified _YPCSHPSEE_ 0 0 0 ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENST00000433272.6_1_12:59266356-59274151:-|nuORF ENSG00000139263|ENST00000320743|LRIG3 ENSG00000139263|ENST00000320743|LRIG3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.27880859375 2 524.705657 1047.39676 -0.40394 -0.00021195 0.84541 0.00044359 0.44147 0.00023164 524.705980675669 30.457 0.28184 30.457 30.285 30.566 0 28 13 3 0 0 0 0.20528 1 15792 15792 8.5933 4.6489 1 4376500 78980 5141 52959 54075 91704 91704 -0.12504222872939863 YPCSSEFF 8 Unmodified _YPCSSEFF_ 0 0 0 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.1967163085938 2 490.196936 978.379319 0.53703 0.00026325 -0.39437 -0.00019332 0.14265 6.9927E-05 490.19622504263396 49.82 0.23171 49.82 49.735 49.966 0 17 10 2 0 0 0 0.80044 1 27463 27463 6.3541 0 1 1920500 + 78981 24230 52960 54076 91705 91705 -0.11073518407920346 YPDALITNY 9 Unmodified _YPDALITNY_ 0 0 0 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2645263671875 2 535.263665 1068.51278 0.53786 0.0002879 2.1736 0.0011634 2.7114 0.0014513 535.2642018208612 60.862 0.54655 60.862 60.603 61.149 0 52 22 4 0 0 0 0.19127 1 33940 33940 24.021 3.5669 1 3167200 78982 3094 52961 54077 91706 91706 -0.018739560305675695 YPDALITNY 9 Unmodified _YPDALITNY_ 0 0 0 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 ENSG00000115204|ENST00000380044|MPV17 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.263665 1068.51278 -0.096176 -5.148E-05 0.17578 9.4091E-05 0.079608 4.2611E-05 535.2632772893592 61.525 0.25736 61.035 60.88 61.137 -0.48932 0.086726 -0.00078386 NaN 24.021 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 956390 78983 3094 52961 54077 -0.018739560305675695 YPDATPEEL 9 Unmodified _YPDATPEEL_ 0 0 0 nc|ENSG00000162298|Q86TM6-2|SYVN1;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000449943.5_1_11:64897669-64899838:-|nuORF nc|ENSG00000162298|Q86TM6-2|SYVN1 nc|ENSG00000162298|Q86TM6-2|SYVN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7367553710938 2 517.73748 1033.46041 0.51818 0.00026828 -0.052971 -2.7425E-05 0.4652 0.00024085 518.2387669432858 45.796 0.34963 45.796 45.625 45.974 0 28 17 2 0 0 0 0.06187 1 24994 24994 42.095 26.247 1 6902700 78984 6845 52962 54078 91707 91707 -0.05498539164182148 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.7834777832031 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 1.3261 1 1.3261 0.8261 1.8261 0 0 0 0 0.8622 1 645 645 0 0 1 78985 1876 52963 54079 91708 91708 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.7829284667969 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 9.3828 1 9.3828 8.8828 9.8828 0 0 0 0 0.8622 1 4468 4468 0 0 1 78986 1876 52963 54079 91709 91709 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.7834777832031 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 9.9951 1 9.9951 9.4951 10.495 0 0 0 0 0.8622 1 4751 4751 0 0 1 78987 1876 52963 54079 91710 91710 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.7835693359375 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 10.289 1 10.289 9.7894 10.789 0 0 0 0 0.8622 1 4885 4885 0 0 1 78988 1876 52963 54079 91711 91711 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.7838439941406 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 0.61717 1 0.54388 0.04388 1.0439 -0.073289 0 0 0 0.8622 1 310 310 0 0 1 78989 1876 52963 54079 91712 91712 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.7841186523438 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 0.80417 1 0.73088 0.23088 1.2309 -0.073289 0 0 0 0.8622 1 402 402 0 0 1 78990 1876 52963 54079 91713 91713 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2687683105469 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 1.8749 1 1.8028 1.3028 2.3028 -0.072029 0 0 0 0.8622 1 934 934 0 0 1 78991 1876 52963 54079 91714 91714 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.5358581542969 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 5.494 1 5.4165 4.9165 5.9165 -0.07749 0 0 0 0.8622 1 2711 2711 0 0 1 78992 1876 52963 54079 91715 91715 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.2677001953125 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 8.0646 1 7.973 7.473 8.473 -0.09156 0 0 0 0.8622 1 3961 3961 0 0 1 78993 1876 52963 54079 91716 91716 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.7839660644531 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 10.363 1 10.274 9.7738 10.774 -0.08967 0 0 0 0.8622 1 5054 5054 0 0 1 78994 1876 52963 54079 91717 91717 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.7832641601562 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 11.92 1 11.855 11.355 12.355 -0.064889 0 0 0 0.8622 1 5794 5794 0 0 1 78995 1876 52963 54079 91718 91718 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.7843627929688 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 0.44257 1 0.4205 -0.079497 0.9205 -0.022065 0 0 0 0.8622 1 237 237 0 0 1 78996 1876 52963 54079 91719 91719 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.7834777832031 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 1.1328 1 1.1122 0.61216 1.6122 -0.020623 0 0 0 0.8622 1 583 583 0 0 1 78997 1876 52963 54079 91720 91720 -0.2138638530479966 YPDDDEDDD 9 Unmodified _YPDDDEDDD_ 0 0 0 nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF nc|ENSG00000100796|Q6IN85-2|PPP4R3A nc|ENSG00000100796|Q6IN85-2|PPP4R3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.7839050292969 3 366.784246 1097.33091 NaN NaN NaN NaN NaN NaN NaN 13.438 1 13.447 12.947 13.947 0.0096512 0 0 0 0.8622 1 6628 6628 0 0 1 78998 1876 52963 54079 91721 91721 -0.2138638530479966 YPDDRTARTL 10 Unmodified _YPDDRTARTL_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.20654296875 3 403.207043 1206.5993 -0.38209 -0.00015406 -0.19859 -8.0072E-05 -0.58067 -0.00023413 403.20675080534767 23.584 0.38479 23.584 23.407 23.791 0 59 19 4 0 0 0 0.56675 2 11993 11993;12092 8.2864 6.0337 1 7251900 78999 4867 52964 54080 91722;91723 91722 0.0042642352398161165 YPDDRTARTL 10 Unmodified _YPDDRTARTL_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.5417175292969 3 403.207043 1206.5993 0.65922 0.0002658 -0.83568 -0.00033695 -0.17646 -7.1151E-05 403.20715077184826 26.677 0.4388 23.726 23.579 24.018 -2.9511 52 22 4 0 0 0 0.32493 2 14679 14679;14800 18.34 10.863 1 24277000 79000 4867 52964 54080 91724;91725 91724 0.0042642352398161165 YPDDRTARTL 10 Unmodified _YPDDRTARTL_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MSMS AL20221201_MKP_PDAC_01 4 604.30517578125 2 604.306926 1206.5993 NaN NaN NaN NaN NaN NaN NaN 26.681 1 23.73 23.23 24.23 -2.9511 0 0 0 0.48009 1 14728 14728 27.223 7.8613 1 79001 4867 52964 54080 91726 91726 0.0042642352398161165 YPDDRTSRTL 10 Unmodified _YPDDRTSRTL_ 0 0 0 nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 nc|ENSG00000075391|Q9UJF2|RASAL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.5392761230469 3 408.538681 1222.59421 -0.46428 -0.00018968 0.40671 0.00016616 -0.05757 -2.352E-05 408.538853183519 21.178 0.27227 21.178 21.055 21.327 0 74 43 2 0 0 0 0.66658 1 10694 10694 6.6235 2.7471 1 1488400 79002 1153 52965 54081 91727 91727 -0.00817880338604482 YPDEFTKLY 9 Unmodified _YPDEFTKLY_ 0 0 0 nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;nc|ENSG00000196712|P21359-4|NF1;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-3|NF1;nc|ENSG00000196712|P21359-5|NF1 nc|ENSG00000196712|P21359-2|NF1 nc|ENSG00000196712|P21359-2|NF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2860107421875 2 588.284597 1174.55464 -0.37914 -0.00022304 0.46042 0.00027086 0.081277 4.7814E-05 588.2849855467672 56.185 0.27764 56.185 55.969 56.247 0 17 12 2 0 0 0 0.091924 1 31227 31227 34.932 10.911 1 1483100 79003 16480 52966 54082 91728 91728 -0.025654003420413574 YPDEMPDEEAK 11 Unmodified _YPDEMPDEEAK_ 0 0 0 REV__ENSG00000186472|ENST00000333891|PCLO REV__ENSG00000186472|ENST00000333891|PCLO MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.851318359375 3 441.851826 1322.53365 NaN NaN NaN NaN NaN NaN NaN 28.057 1 28.057 27.557 28.557 0 0 0 0 0.94293 1 14477 14477 0.40827 0 1 + 79004 23576 52967 54083 91729 91729 -0.11471778503891983 YPDENGFDAF 10 Unmodified _YPDENGFDAF_ 0 0 0 ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC ENSG00000078618|ENST00000352171|NRDC ENSG00000078618|ENST00000352171|NRDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.736572265625 2 587.738011 1173.46147 0.097442 5.7271E-05 -1.1389 -0.00066939 -1.0415 -0.00061212 587.7369399179415 63.102 0.41766 63.102 62.92 63.338 0 36 17 3 0 0 0 0.29752 2 35267 35162;35267 27.629 17.555 1 1802300 79005 1247 52968 54084 91730;91731 91731 -0.1183232479529579 YPDERTALY 9 Unmodified _YPDERTALY_ 0 0 0 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 ENSG00000145391|ENST00000274031|SETD7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2723388671875 2 564.272021 1126.52949 1.1453 0.00064624 -0.80826 -0.00045608 0.337 0.00019016 564.2714688897693 42.827 0.59883 38.142 37.858 38.457 -4.6846 91 38 3 0 0 0 0.012586 3 25948 25810;25948;26084 70.332 26.474 1 53576000 79006 5694 52969 54085 91732;91733;91734 91733 -0.02871455144600077 YPDEYHGEY 9 Unmodified _YPDEYHGEY_ 0 0 0 nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7301635742188 2 586.730186 1171.44582 -0.75657 -0.0004439 0.94875 0.00055666 0.19218 0.00011276 586.7306938275661 30.233 0.26272 30.233 30.12 30.383 0 46 12 5 0 0 0 0.03568 2 15680 15680;15780 52.268 28.248 1 25290000 79007 3314 52970 54086 91735;91736 91735 -0.1330461131233278 YPDEYHGEY 9 Unmodified _YPDEYHGEY_ 0 0 0 nc|ENSG00000117519|Q15417-3|CNN3;nc|ENSG00000117519|Q15417-2|CNN3;ENSG00000117519|ENST00000370206|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 nc|ENSG00000117519|Q15417-3|CNN3 MSMS AL20221201_MKP_PDAC_01 4 586.7300415039062 2 586.730186 1171.44582 NaN NaN NaN NaN NaN NaN NaN 34.629 1 30.534 30.034 31.034 -4.0951 0 0 0 0.18753 1 19990 19990 32.305 8.2849 1 79008 3314 52970 54086 91737 91737 -0.1330461131233278 YPDFRFKTY 9 Unmodified _YPDFRFKTY_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8735046386719 3 412.873113 1235.59751 0.89854 0.00037098 0.060431 2.495E-05 0.95897 0.00039593 412.8730433279254 49.829 0.3603 49.78 49.626 49.986 -0.048824 41 17 4 0 0 0 0.21643 1 26907 26907 15.739 8.7015 1 3969600 79009 2483 52971 54087 91738 91738 -0.010865854939311248 YPDFRFKTY 9 Unmodified _YPDFRFKTY_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MSMS AL20221201_MKP_PDAC_01 4 412.87255859375 3 412.873113 1235.59751 NaN NaN NaN NaN NaN NaN NaN 55.225 1 49.304 48.804 49.804 -5.9211 0 0 0 0.3031 1 35130 35130 23.801 8.9632 1 79010 2483 52971 54087 91739 91739 -0.010865854939311248 YPDGHGDYAY 10 Unmodified _YPDGHGDYAY_ 0 0 0 nc|ENSG00000184402|O75177-5|SS18L1;nc|ENSG00000184402|O75177-2|SS18L1;ENSG00000184402|ENST00000331758|SS18L1;nc|ENSG00000184402|O75177-4|SS18L1;nc|ENSG00000184402|O75177-3|SS18L1 nc|ENSG00000184402|O75177-5|SS18L1 nc|ENSG00000184402|O75177-5|SS18L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.2305908203125 2 579.230353 1156.44615 NaN NaN NaN NaN NaN NaN NaN 29.494 1 29.494 28.994 29.994 0 0 0 0 0.24983 1 15279 15279 39.957 25.376 1 79011 16456 52972 54088 91740 91740 -0.1258119159247144 YPDGIRHI 8 Unmodified _YPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 485.7581787109375 2 485.758884 969.503215 -0.97326 -0.00047277 0.050165 2.4368E-05 -0.92309 -0.0004484 485.75878556048116 32.638 0.27166 32.638 32.481 32.753 0 41 14 4 0 0 0 0.079485 2 17021 17021;17131 108 50.526 1 29209000 79012 9729 52973 54089 91741;91742 91741 0.017243204745682306 YPDGIRHI 8 Unmodified _YPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7588806152344 2 485.758884 969.503215 -0.11671 -5.6693E-05 0.48144 0.00023386 0.36472 0.00017717 485.7591023369002 32.741 0.32796 32.582 32.407 32.735 -0.15918 42 13 4 0 0 0 0.060415 2 17018 17018;17127 128.37 67.976 1 21733000 79013 9729 52973 54089 91743;91744 91743 0.017243204745682306 YPDGIRHI 8 Unmodified _YPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7590637207031 2 485.758884 969.503215 NaN NaN NaN NaN NaN NaN NaN 32.62 1 32.649 32.149 33.149 0.029743 0 0 0 0.9192 1 17132 17132 16.942 0 1 79014 9729 52973 54089 91745 91745 0.017243204745682306 YPDGIRHI 8 Unmodified _YPDGIRHI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;ENST00000568291.2_1_16:70588380-70590279:+|nuORF ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 485.7592163085938 2 485.758884 969.503215 0.63594 0.00030891 0.049346 2.397E-05 0.68529 0.00033288 485.75888845495507 36.576 0.56755 32.293 32.046 32.613 -4.2835 102 35 4 0 0 0 0.079485 3 21372 21248;21372;21489 108 50.526 1 154630000 79015 9729 52973 54089 91746;91747;91748 91747 0.017243204745682306 YPDGKAEIL 9 Unmodified _YPDGKAEIL_ 0 0 0 ENSG00000109756|ENST00000691494|RAPGEF2;nc|ENSG00000109756|Q9Y4G8|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 ENSG00000109756|ENST00000691494|RAPGEF2 MSMS AL20221201_MKP_PDAC_01 4 503.2670288085938 2 503.266207 1004.51786 NaN NaN NaN NaN NaN NaN NaN 46.315 1 41.235 40.735 41.735 -5.0805 0 0 0 0.26013 1 28584 28584 27.223 0.95509 1 79016 2669 52974 54090 91749 91749 0.01578347832048621 YPDGPVLL 8 Unmodified _YPDGPVLL_ 0 0 0 REV__ENSG00000214309|ENST00000398075|MBLAC1 REV__ENSG00000214309|ENST00000398075|MBLAC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 873.472412109375 1 873.471646 872.46437 0.14206 0.00012409 0.28387 0.00024796 0.42594 0.00037204 873.4720204613207 85.058 0.53242 85.058 84.807 85.34 0 48 27 2 0 0 0 0.44122 1 47156 47156 40.449 0 1 4079900 + 79017 24309 52975 54091 91750 91750 0.023035951202018623 YPDGRKEITF 10 Unmodified _YPDGRKEITF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.2120056152344 3 409.211906 1224.61389 0.28554 0.00011685 0.22154 9.0658E-05 0.50709 0.00020751 409.21190818851477 36.912 0.55177 36.912 36.628 37.18 0 75 26 4 0 0 0 0.50362 2 19641 19535;19641 18.721 8.5707 1 7339600 79018 6151 52976 54092 91751;91752 91752 0.010564956721282215 YPDGRKEITF 10 Unmodified _YPDGRKEITF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.212158203125 3 409.211906 1224.61389 -0.20002 -8.1851E-05 1.2822 0.0005247 1.0822 0.00044285 409.21233461813904 37.215 0.44925 36.943 36.686 37.136 -0.27133 30 18 2 0 0 0 0.65773 1 19559 19559 10.315 6.4389 1 1747800 79019 6151 52976 54092 91753 91753 0.010564956721282215 YPDGRKEITF 10 Unmodified _YPDGRKEITF_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.2127990722656 3 409.211906 1224.61389 0.30618 0.00012529 0.88683 0.0003629 1.193 0.00048819 409.21240786794556 41.382 0.43888 36.774 36.513 36.952 -4.6079 63 28 3 0 0 0 0.50362 1 24745 24745 14.218 3.3192 1 22183000 79020 6151 52976 54092 91754 91754 0.010564956721282215 YPDGTVKTVY 10 Unmodified _YPDGTVKTVY_ 0 0 0 ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ ENSG00000151849|ENST00000381884|CENPJ MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7352294921875 2 571.790047 1141.56554 -0.26694 -0.00015263 -0.62551 -0.00035766 -0.89245 -0.00051029 571.7896532515665 34.871 0.37837 34.871 34.675 35.053 0 33 19 2 0 0 0 0.21985 1 18462 18462 23.79 7.9426 1 2288000 79021 6151 52977 54093 91755 91755 0.0004200203222808341 YPDHFHLL 8 Unmodified _YPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.3132934570312 2 521.261259 1040.50797 0.13183 6.8716E-05 1.3823 0.00072053 1.5141 0.00078925 521.2618988283988 59.944 0.39365 59.453 59.193 59.586 -0.49079 30 19 2 0 0 0 8.7369 1 32611 32611 49.669 28.798 1 4222700 79022 451 52978 54094 91756 91756 -0.010667953826668963 YPDHFHLL 8 Unmodified _YPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.2615966796875 2 521.261259 1040.50797 0.2112 0.00011009 0.22122 0.00011532 0.43242 0.00022541 521.2612301709363 59.563 0.26819 59.509 59.346 59.614 -0.053059 21 13 2 0 0 0 0.17881 1 32459 32459 78.445 28.776 1 3170700 79023 451 52978 54094 91757 91757 -0.010667953826668963 YPDHFHLL 8 Unmodified _YPDHFHLL_ 0 0 0 ENSG00000011485|ENST00000012443|PPP5C;ENST00000487483.6_1_19:46886892-46890886:+|nuORF;ENST00000467502.6_1_19:46886456-46890886:+|nuORF;ENST00000486994.5_1_19:46886892-46893600:+|nuORF ENSG00000011485|ENST00000012443|PPP5C ENSG00000011485|ENST00000012443|PPP5C MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2618408203125 2 521.261259 1040.50797 1.1948 0.0006228 -0.81521 -0.00042494 0.37957 0.00019786 521.2604807569295 87.696 0.41505 81.521 81.237 81.652 -6.1757 35 22 2 0 0 0 0.1036 2 57897 57751;57897 98.807 49.138 1 14856000 79024 451 52978 54094 91758;91759 91759 -0.010667953826668963 YPDINFNRL 9 Unmodified _YPDINFNRL_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 576.2953491210938 2 576.29583 1150.57711 0.45494 0.00026218 0.48246 0.00027804 0.93739 0.00054021 576.2957083267862 63.289 0.40902 62.803 62.583 62.992 -0.48617 57 18 4 0 0 0 0.039985 1 34449 34449 49.933 37.401 1 6923300 79025 10598 52979 54095 91760 91760 0.007842438462375867 YPDINFNRL 9 Unmodified _YPDINFNRL_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2959594726562 2 576.29583 1150.57711 0.75557 0.00043543 0.70863 0.00040838 1.4642 0.00084382 576.2965892428584 69.809 0.51913 63.633 63.243 63.763 -6.1757 45 27 2 0 0 0 0.0055767 2 45616 45498;45616 115.69 36.964 1 39143000 79026 10598 52979 54095 91761;91762 91762 0.007842438462375867 YPDINFNRL 9 Unmodified _YPDINFNRL_ 0 0 0 nc|ENSG00000227345|Q86W56-3|PARG;nc|ENSG00000227345|Q86W56-2|PARG;ENSG00000227345|ENST00000616448|PARG;nc|ENSG00000227345|Q86W56-5|PARG;nc|ENSG00000227345|Q86W56-4|PARG nc|ENSG00000227345|Q86W56-3|PARG nc|ENSG00000227345|Q86W56-3|PARG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 576.29583 1150.57711 1.1743 0.00067672 -0.32772 -0.00018886 0.84654 0.00048786 576.7974451175124 64.027 0.10069 64.017 63.976 64.077 -0.010529 0.19202 -0.00074616 NaN 115.69 5 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1335200 79027 10598 52979 54095 0.007842438462375867 YPDIRIEGE 9 Unmodified _YPDIRIEGE_ 0 0 0 ENSG00000198843|ENST00000471696|SELENOT ENSG00000198843|ENST00000471696|SELENOT ENSG00000198843|ENST00000471696|SELENOT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2647705078125 2 546.272021 1090.52949 -0.40464 -0.00022104 -1.4939 -0.00081607 -1.8985 -0.0010371 546.2717887238869 28.706 0.3365 28.706 28.503 28.839 0 35 16 3 0 0 0 0.43463 1 14770 14770 10.824 1.4765 1 7221200 79028 10171 52980 54096 91763 91763 -0.012154551446201367 YPDKDLLD 8 Unmodified _YPDKDLLD_ 0 0 0 REV__ENSG00000196187|ENST00000366835|TMEM63A REV__ENSG00000196187|ENST00000366835|TMEM63A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 982.491943359375 1 978.477854 977.470577 0.083779 8.1976E-05 0.49661 0.00048592 0.58038 0.00056789 978.4780765627982 69.707 0.37582 69.707 69.511 69.887 0 62 17 5 0 0 0 0.79669 1 38800 38800 8.5933 0.68312 1 11598000 + 79029 23802 52981 54097 91764 91764 -0.01905931438943753 YPDLDELPES 10 Unmodified _YPDLDELPES_ 0 0 0 REV__nc|ENSG00000169432|Q15858-4|SCN9A;REV__nc|ENSG00000153253|Q9NY46-4|SCN3A REV__nc|ENSG00000169432|Q15858-4|SCN9A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2667236328125 2 589.266601 1176.51865 NaN NaN NaN NaN NaN NaN NaN 7.863 1 7.8782 7.3782 8.3782 0.015238 0 0 0 1.0061 1 3918 3918 0 0 1 + 79030 22400;21165 52982 54098 91765 91765 -0.06254902309547106 YPDLGIENY 9 Unmodified _YPDLGIENY_ 0 0 0 ENST00000541225.5_1_17:66883094-66937097:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8 ENST00000541225.5_1_17:66883094-66937097:-|nuORF ENST00000541225.5_1_17:66883094-66937097:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.1957397460938 2 542.253297 1082.49204 0.49234 0.00026698 -1.3239 -0.00071789 -0.83155 -0.00045091 542.2530991910809 60.906 0.48679 60.906 60.559 61.045 0 34 20 2 0 0 0 0.18118 1 33978 33978 12.532 5.2423 1 1683600 79031 5316 52983 54099 91766 91766 -0.04590546410236129 YPDLLFDSF 9 Unmodified _YPDLLFDSF_ 0 0 0 REV__ENSG00000009954|ENST00000339594|BAZ1B REV__ENSG00000009954|ENST00000339594|BAZ1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.245361328125 2 558.76604 1115.51753 0.4062 0.00022697 0.83248 0.00046516 1.2387 0.00069213 558.7664777731678 82.548 0.26376 82.548 82.434 82.697 0 15 10 2 0 0 0 0.49272 1 45749 45749 7.9102 2.1497 1 586380 + 79032 17039 52984 54100 91767 91767 -0.03561071887793332 YPDLLHLY 8 Unmodified _YPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.2713012695312 2 517.271293 1032.52803 0.30762 0.00015912 0.059785 3.0925E-05 0.36741 0.00019005 517.2713127015793 69.664 0.49007 69.664 69.326 69.816 0 42 22 2 0 0 0 0.18881 1 38760 38760 74.396 0 1 2649600 79033 2012 52985 54101 91768 91768 0.013069555572883473 YPDLLHLY 8 Unmodified _YPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2705688476562 2 517.271293 1032.52803 -0.069564 -3.5984E-05 -0.47339 -0.00024487 -0.54295 -0.00028085 517.2708031704822 70.033 0.87128 69.554 68.997 69.869 -0.47903 127 42 5 0 0 0 0.18881 2 38256 38256;38357 74.396 0 1 10505000 79034 2012 52985 54101 91769;91770 91769 0.013069555572883473 YPDLLHLY 8 Unmodified _YPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.271484375 2 517.271293 1032.52803 0.33786 0.00017476 0.77508 0.00040093 1.1129 0.00057569 517.2718085384666 78.367 0.51007 72.191 71.99 72.5 -6.1757 57 31 3 0 0 0 0.24071 1 51211 51211 63.563 0 1 24250000 79035 2012 52985 54101 91771 91771 0.013069555572883473 YPDLLHLY 8 Unmodified _YPDLLHLY_ 0 0 0 ENSG00000102034|ENST00000308167|ELF4;ELF4|p.F136Sfs*4|1|0.57|ENSG00000102034|chrX:130072350-130072351|AA/-|frameshift_variant ENSG00000102034|ENST00000308167|ELF4 ENSG00000102034|ENST00000308167|ELF4 MSMS AL20221201_MKP_PDAC_01 4 517.2750244140625 2 517.271293 1032.52803 NaN NaN NaN NaN NaN NaN NaN 77.972 1 71.796 71.296 72.296 -6.1757 0 0 0 0.40668 1 51016 51016 53.576 0 1 79036 2012 52985 54101 91772 91772 0.013069555572883473 YPDNLKHLY 9 Unmodified _YPDNLKHLY_ 0 0 0 ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF ENST00000552606.1_1_12:82750710-82752155:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 388.2012329101562 3 388.201229 1161.58186 1.2082 0.00046903 -0.3977 -0.00015439 0.81052 0.00031465 388.20092913629856 42.357 0.51064 37.672 37.423 37.934 -4.6846 97 33 4 0 0 0 0.12424 2 25481 25481;25614 28.495 16.977 1 118910000 79037 4532 52986 54102 91773;91774 91773 0.007531279890145015 YPDPCKNIF 9 Carbamidomethyl (C) _YPDPC(Carbamidomethyl (C))KNIF_ YPDPC(1)KNIF YPDPC(66)KNIF 0 1 0 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 ENSG00000135697|ENST00000258168|BCO1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2711791992188 2 577.270967 1152.52738 0.29519 0.00017041 1.6117 0.00093037 1.9069 0.0011008 577.2717393405295 56.201 0.44468 50.224 50.002 50.446 -5.9769 40 25 2 0 0 0 0.017075 1 35778 35778 66.457 43.308 1 35291000 79038 4732 52987 54103 91775 91775 482 -0.04278207154084157 YPDPDRRM 8 Oxidation (M) _YPDPDRRM(Oxidation (M))_ YPDPDRRM(1) YPDPDRRM(54) 0 0 1 ENST00000489372.4_1_10:65028802-65028964:-|nuORF ENST00000489372.4_1_10:65028802-65028964:-|nuORF ENST00000489372.4_1_10:65028802-65028964:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 533.24560546875 2 533.242741 1064.47093 NaN NaN NaN NaN NaN NaN NaN 22.568 1 19.789 19.289 20.289 -2.7784 0 0 0 0.40668 1 12143 12143 53.576 29.555 1 79039 14237 52988 54104 91776 91776 1771 -0.05872834990736919 YPDPIPIAPD 10 Unmodified _YPDPIPIAPD_ 0 0 0 REV__ENSG00000172037|ENST00000305544|LAMB2 REV__ENSG00000172037|ENST00000305544|LAMB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2796630859375 2 549.279315 1096.54408 0.22978 0.00012621 0.20348 0.00011177 0.43326 0.00023798 549.2793448583549 78.868 0.97554 78.382 77.971 78.947 -0.48596 98 40 3 0 0 0 0.50944 1 43312 43312 15.847 0 1 57302000 + 79040 22624 52989 54105 91777 91777 -0.0003338299648021348 YPDPLCFTL 9 Unmodified _YPDPLCFTL_ 0 0 0 REV__nc|ENSG00000066056|P35590-3|TIE1 REV__nc|ENSG00000066056|P35590-3|TIE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7561645507812 2 534.757161 1067.49977 0.28253 0.00015109 -1.506 -0.00080533 -1.2234 -0.00065424 535.2578989986008 78.686 0.49757 78.686 78.413 78.911 0 34 23 2 0 0 0 0.54444 1 43718 43718 4.756 0.42677 1 553010 + 79041 17394 52990 54106 91778 91778 -0.03128110414309049 YPDPLCFVY 9 Unmodified _YPDPLCFVY_ 0 0 0 REV__nc|ENSG00000120156|Q02763-3|TEK REV__nc|ENSG00000120156|Q02763-3|TEK MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7591552734375 2 558.757161 1115.49977 1.3794 0.00077074 1.4532 0.00081196 2.8325 0.0015827 558.7580931304594 37.637 0.29017 33.268 33.091 33.381 -4.3689 25 17 2 0 0 0 0.15471 1 22071 22071 30.225 8.4782 1 10698000 + 79042 19230 52991 54107 91779 91779 -0.05336110414327777 YPDPNYLQNVL 11 Unmodified _YPDPNYLQNVL_ 0 0 0 nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2;ENST00000465488.1_1_7:76132718-76134915:+|nuORF;ENST00000468546.5_1_7:76131596-76134915:+|nuORF;ENST00000479915.5_1_7:76129456-76134915:+|nuORF nc|ENSG00000091073|Q86UW9-2|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.3329467773438 2 668.33261 1334.65067 0.76928 0.00051414 -0.00051493 -3.4414E-07 0.76877 0.00051379 668.3326605849903 79.403 0.30408 78.914 78.704 79.008 -0.48932 29 12 3 0 0 0 0.68777 2 43433 43433;43534 5.4027 4.2094 1 1191600 79043 1577 52992 54108 91780;91781 91780 -0.003272525019610839 YPDPNYLQNVL 11 Unmodified _YPDPNYLQNVL_ 0 0 0 nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2;ENST00000465488.1_1_7:76132718-76134915:+|nuORF;ENST00000468546.5_1_7:76131596-76134915:+|nuORF;ENST00000479915.5_1_7:76129456-76134915:+|nuORF nc|ENSG00000091073|Q86UW9-2|DTX2 nc|ENSG00000091073|Q86UW9-2|DTX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.8340454101562 2 668.33261 1334.65067 0.89802 0.00060017 -0.17765 -0.00011873 0.72037 0.00048145 668.3324197437609 86.812 0.31482 80.637 80.473 80.788 -6.1757 25 16 2 0 0 0 0.01584 1 57227 57227 61.602 41.187 1 11124000 79044 1577 52992 54108 91782 91782 -0.003272525019610839 YPDPVSIIQKY 11 Unmodified _YPDPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.8522338867188 2 661.853178 1321.6918 0.029526 1.9542E-05 0.36636 0.00024247 0.39588 0.00026202 661.8534049435298 70.083 1.3065 69.604 68.676 69.983 -0.47903 175 62 3 0 0 0 1.1285E-08 7 38290 37872;37979;38079;38180;38290;38396;38507 139.38 125.76 1 9748200 79045 9795 52993 54109 91783;91784;91785;91786;91787;91788;91789 91787 0.04382508537537433 YPDPVSIIQKY 11 Unmodified _YPDPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 661.8525390625 2 661.853178 1321.6918 NaN NaN NaN NaN NaN NaN NaN 70.643 1 70.165 69.665 70.665 -0.47735 0 0 0 0.72751 1 38650 38650 19.362 13.156 1 79046 9795 52993 54109 91790 91790 0.04382508537537433 YPDPVSIIQKY 11 Unmodified _YPDPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 661.85205078125 2 661.853178 1321.6918 0.71064 0.00047034 0.40923 0.00027085 1.1199 0.00074119 661.8530634967299 69.518 1.3598 69.549 68.73 70.089 0.030914 100 70 2 0 0 0 6.3757E-15 4 38145 37927;38035;38145;38251 158.08 137.66 1 8551600 79047 9795 52993 54109 91791;91792;91793;91794 91793 0.04382508537537433 YPDPVSIIQKY 11 Unmodified _YPDPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.8533325195312 2 661.853178 1321.6918 0.69884 0.00046253 0.30842 0.00020413 1.0073 0.00066666 661.8532817385521 79.286 1.9896 73.11 72.126 74.115 -6.1757 313 119 3 0 0 0 8.8755E-53 10 52311 51394;51535;51669;51796;51920;52045;52180;52311;52442;52573 253.32 227.92 1 77668000 79048 9795 52993 54109 91795;91796;91797;91798;91799;91800;91801;91802;91803;91804 91802 0.04382508537537433 YPDPVSIIQKY 11 Unmodified _YPDPVSIIQKY_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS AL20221201_MKP_PDAC_01 4 661.852783203125 2 661.853178 1321.6918 NaN NaN NaN NaN NaN NaN NaN 78.334 1 72.158 71.658 72.658 -6.1757 0 0 0 0.00055855 1 51270 51270 108.26 73.33 1 79049 9795 52993 54109 91805 91805 0.04382508537537433 YPDPYGGEKL 10 Unmodified _YPDPYGGEKL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MSMS AL20221201_MKP_PDAC_01 4 569.7759399414062 2 569.774396 1137.53424 NaN NaN NaN NaN NaN NaN NaN 46.738 1 41.657 41.157 42.157 -5.0805 0 0 0 0.14312 1 28928 28928 47.732 16.464 1 79050 10835 52994 54110 91806 91806 -0.029025710018458994 YPDPYSRASL 10 Unmodified _YPDPYSRASL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.7850952148438 2 584.785296 1167.55604 -0.15164 -8.8677E-05 -0.37168 -0.00021735 -0.52332 -0.00030603 584.7850386642375 41.929 0.39593 41.929 41.709 42.105 0 37 20 2 0 0 0 0.10406 2 22652 22652;22771 45.74 9.5328 1 44879000 79051 10835 52995 54111 91807;91808 91807 -0.021037662532762624 YPDPYSRASL 10 Unmodified _YPDPYSRASL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 584.7854614257812 2 584.785296 1167.55604 -0.18124 -0.00010599 0.076644 4.482E-05 -0.1046 -6.1167E-05 584.7853661016361 42.205 0.28211 41.898 41.741 42.023 -0.30682 22 13 2 0 0 0 0.03037 1 22407 22407 67.838 16.208 1 19719000 79052 10835 52995 54111 91809 91809 -0.021037662532762624 YPDPYSRASL 10 Unmodified _YPDPYSRASL_ 0 0 0 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 ENSG00000261150|ENST00000615648|EPPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.7859497070312 2 584.785296 1167.55604 1.3416 0.00078455 -0.19471 -0.00011387 1.1469 0.00067069 584.7852511619299 47.792 0.76152 42.558 42.243 43.005 -5.2339 77 45 2 0 0 0 0.03037 3 29704 29572;29704;29835 67.838 16.983 1 181930000 79053 10835 52995 54111 91810;91811;91812 91811 -0.021037662532762624 YPDQKENTH 9 Unmodified _YPDQKENTH_ 0 0 0 ENSG00000064886|ENST00000369748|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2;nc|ENSG00000064886|Q15782-5|CHI3L2 ENSG00000064886|ENST00000369748|CHI3L2 ENSG00000064886|ENST00000369748|CHI3L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.25537109375 2 566.256902 1130.49925 0.55058 0.00031177 -1.6526 -0.0009358 -1.102 -0.00062403 566.2559479597759 82.289 0.33491 76.114 75.97 76.305 -6.1757 26 17 2 0 0 0 0.30202 1 54069 54069 17.113 1.2657 1 12275000 79054 886 52996 54112 91813 91813 -0.0607781380981578 YPDQSQPYI 9 Unmodified _YPDQSQPYI_ 0 0 0 REV__ENST00000474952.5_1_6:10406972-10411829:-|nuORF REV__ENST00000474952.5_1_6:10406972-10411829:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 555.760009765625 2 555.758746 1109.50294 NaN NaN NaN NaN NaN NaN NaN 43.683 1 38.919 38.419 39.419 -4.7648 0 0 0 0.13831 1 26566 26566 38.176 4.7307 1 + 79055 20221 52997 54113 91814 91814 -0.047431440359332555 YPDQYVREY 9 Unmodified _YPDQYVREY_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 616.7832641601562 2 616.782753 1231.55095 0.73778 0.00045505 0.068606 4.2315E-05 0.80639 0.00049737 616.7826395986024 36.806 0.40975 36.806 36.588 36.997 0 45 19 3 0 0 0 0.022461 2 19513 19513;19620 61.09 34.822 1 4107300 79056 733 52998 54114 91815;91816 91815 -0.05556070115903822 YPDQYVREY 9 Unmodified _YPDQYVREY_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.7824096679688 2 616.782753 1231.55095 0.58932 0.00036348 -0.051689 -3.1881E-05 0.53763 0.0003316 616.7826983037621 42.244 0.29128 37.56 37.44 37.732 -4.6846 32 18 2 0 0 0 0.018061 1 25526 25526 65.474 39.206 1 9621800 79057 733 52998 54114 91817 91817 -0.05556070115903822 YPDRIMNTF 9 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ YPDRIM(1)NTF YPDRIM(62)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7734985351562 2 586.773874 1171.53319 -0.40664 -0.00023861 -0.44082 -0.00025866 -0.84746 -0.00049727 586.774011088697 40.967 0.5428 40.967 40.675 41.218 0 162 46 4 0 0 0 0.021948 3 22018 21907;22018;22123 61.602 29.296 1 167590000 79058 9643;9783;4920;10820;14685 52999 54115 91818;91819;91820 91819 895 -0.04571108642426225 YPDRIMNTF 9 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ YPDRIM(1)NTF YPDRIM(70)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7744750976562 2 586.773874 1171.53319 -0.096415 -5.6574E-05 -0.10945 -6.4223E-05 -0.20587 -0.0001208 586.7739885314985 41.314 0.48632 41.011 40.776 41.262 -0.30304 86 22 5 0 0 0 0.013609 2 21814 21814;21921 70.332 34.205 1 107530000 79059 9643;9783;4920;10820;14685 52999 54115 91821;91822 91821 895 -0.04571108642426225 YPDRIMNTF 9 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ YPDRIM(1)NTF YPDRIM(50)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.7744140625 2 586.773874 1171.53319 0.41592 0.00024405 -0.1598 -9.3769E-05 0.25612 0.00015028 586.7739960303392 41.024 0.37025 41.023 40.83 41.2 -0.0017929 39 17 3 0 0 0 0.040683 2 21956 21850;21956 49.554 24.155 1 4185300 79060 9643;9783;4920;10820;14685 52999 54115 91823;91824 91824 895 -0.04571108642426225 YPDRIMNTF 9 Oxidation (M) _YPDRIM(Oxidation (M))NTF_ YPDRIM(1)NTF YPDRIM(89)NTF 0 0 1 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7738647460938 2 586.773874 1171.53319 0.36834 0.00021613 -0.40931 -0.00024017 -0.040971 -2.4041E-05 586.7739359255494 46.484 0.48433 41.403 41.082 41.566 -5.0805 143 55 4 0 0 0 0.0086209 3 28827 28522;28668;28827 89.401 36.392 1 454550000 79061 9643;9783;4920;10820;14685 52999 54115 91825;91826;91827 91827 895 -0.04571108642426225 YPDRIMNTF 9 Unmodified _YPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7761840820312 2 578.776416 1155.53828 0.51248 0.00029661 -0.6455 -0.0003736 -0.13302 -7.699E-05 578.7762904941212 52.592 0.35159 52.159 51.985 52.336 -0.43367 58 17 4 0 0 0 0.0081887 1 28473 28473 93.166 40.898 1 25505000 79062 9643;9783;4920;10820;14685 52999 54116 91828 91828 -0.033268047797946565 YPDRIMNTF 9 Unmodified _YPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7771606445312 2 578.776416 1155.53828 1.4581 0.00084393 -1.4812 -0.00085728 -0.023077 -1.3356E-05 578.7757254364939 58.728 0.85149 52.654 52.319 53.171 -6.0745 168 47 5 0 0 0 0.0081887 2 37507 37507;37631 93.166 31.808 1 515550000 79063 9643;9783;4920;10820;14685 52999 54116 91829;91830 91829 -0.033268047797946565 YPDRIMNTF 9 Unmodified _YPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 578.776416 1155.53828 -0.090997 -5.2667E-05 -0.74135 -0.00042908 -0.83235 -0.00048174 578.7764203093969 52.061 0.19975 52.061 51.953 52.152 0 -0.08154 -8.2439E-05 NaN 93.166 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1915700 79064 9643;9783;4920;10820;14685 52999 54116 -0.033268047797946565 YPDRIMNTF 9 Unmodified _YPDRIMNTF_ 0 0 0 ENSG00000188229|ENST00000340384|TUBB4B;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3 ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000196230|ENST00000327892|TUBB;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000258947|ENST00000315491|TUBB3 ENSG00000196230|ENST00000327892|TUBB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 578.776416 1155.53828 0.9144 0.00052923 -0.74384 -0.00043051 0.17056 9.8717E-05 578.7759861152193 52.267 0.20154 52.208 52.087 52.289 -0.058918 0.065477 -8.5315E-05 NaN 93.166 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1586000 79065 9643;9783;4920;10820;14685 52999 54116 -0.033268047797946565 YPDRVAYIV 9 Unmodified _YPDRVAYIV_ 0 0 0 REV__ENSG00000128059|ENST00000264220|PPAT REV__ENSG00000128059|ENST00000264220|PPAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8663330078125 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 4.0739 1 4.0676 3.5676 4.5676 -0.0062971 0 0 0 0.6557 1 2064 2064 7.1017 0 1 + 79066 19599 53000 54117 91831 91831 0.032540294773070855 YPDSDAVLICF 11 Carbamidomethyl (C) _YPDSDAVLIC(Carbamidomethyl (C))F_ YPDSDAVLIC(1)F YPDSDAVLIC(54)F 0 1 0 ENSG00000115963|ENST00000263895|RND3;ENSG00000108830|ENST00000587250|RND2 ENSG00000115963|ENST00000263895|RND3 ENSG00000115963|ENST00000263895|RND3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 650.2987060546875 2 650.299921 1298.58529 1.0116 0.00065788 0.48825 0.00031751 1.4999 0.00097539 650.3001610441604 95.009 0.9765 88.834 88.219 89.195 -6.1757 97 55 2 0 0 0 0.036454 3 62795 62665;62795;62927 53.833 37.986 1 13160000 79067 3180 53001 54118 91832;91833;91834 91833 328 -0.052059900193171416 YPDSHLPTL 9 Unmodified _YPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.76416015625 2 521.763832 1041.51311 0.52984 0.00027645 1.9122 0.00099769 2.442 0.0012741 521.7639190585445 51.681 0.58339 51.681 51.369 51.953 0 59 26 4 0 0 0 0.012148 2 28577 28459;28577 74.423 43.786 1 13819000 79068 3522 53002 54119 91835;91836 91836 -0.00598536310712916 YPDSHLPTL 9 Unmodified _YPDSHLPTL_ 0 0 0 nc|ENSG00000120549|Q5T5P2-3|KIAA1217;ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7646484375 2 521.763832 1041.51311 0.43196 0.00022538 0.97944 0.00051104 1.4114 0.00073642 521.7640828227231 52.186 0.49077 51.753 51.494 51.985 -0.43367 62 24 4 0 0 0 0.013323 2 28196 28094;28196 71.134 42.052 1 8063700 79069 3522 53002 54119 91837;91838 91838 -0.00598536310712916 YPDTDVILM 9 Oxidation (M) _YPDTDVILM(Oxidation (M))_ YPDTDVILM(1) YPDTDVILM(60) 0 0 1 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7572021484375 2 541.757358 1081.50016 -0.17358 -9.4041E-05 0.0034721 1.881E-06 -0.17011 -9.216E-05 541.7574709540071 56.223 0.62697 56.223 55.916 56.543 0 106 29 5 0 0 0 0.023164 3 31162 31162;31275;31379 60.39 37.241 1 68422000 79070 959 53003 54120 91839;91840;91841 91839 154 -0.0373273548511861 YPDTDVILM 9 Unmodified _YPDTDVILM_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.7594604492188 2 533.759901 1065.50525 0.68951 0.00036803 -0.40303 -0.00021512 0.28648 0.00015291 533.7596711336937 73.616 0.42838 73.616 73.379 73.807 0 37 19 3 0 0 0 0.49766 2 40923 40923;41022 11.64 7.9102 1 1034600 79071 959 53003 54121 91842;91843 91842 -0.02488431622509779 YPDTDVILM 9 Unmodified _YPDTDVILM_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.759521484375 2 533.759901 1065.50525 0.64693 0.0003453 -0.053442 -2.8525E-05 0.59349 0.00031678 533.7597741800615 81.939 0.78796 75.763 75.427 76.215 -6.1757 102 43 3 0 0 0 0.094149 3 53755 53633;53755;53886 46.921 26.05 1 46079000 79072 959 53003 54121 91844;91845;91846 91845 -0.02488431622509779 YPDTDVILM 9 Unmodified _YPDTDVILM_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MSMS AL20221201_MKP_PDAC_01 4 1066.7451171875 1 1066.51252 1065.50525 0.51094 0.00054492 -0.45061 -0.00048058 0.060329 6.4341E-05 1066.512658982536 81.967 0.60495 75.791 75.481 76.086 -6.1757 42 33 2 0 0 0 0.011671 1 53662 53662 97.075 57.117 1 9934100 79073 959 53003 54121 91847 91847 -0.02488431622509779 YPDTDVILM 9 Unmodified _YPDTDVILM_ 0 0 0 ENSG00000155366|ENST00000339083|RHOC;ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB ENSG00000155366|ENST00000339083|RHOC ENSG00000155366|ENST00000339083|RHOC MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 533.759901 1065.50525 0.68951 0.00036803 -0.40303 -0.00021512 0.28648 0.00015291 533.7596711336937 73.616 0.42838 73.616 73.379 73.807 0 0 0 NaN 11.64 37 19 3 NaN NaN NaN NaN 0 NaN NaN 0 1034600 79074 959 53003 54121 -0.02488431622509779 YPDTHRHRL 9 Unmodified _YPDTHRHRL_ 0 0 0 ENSG00000121691|ENST00000241052|CAT;CAT|p.A357T|1|0.18|ENSG00000121691|chr11:34461263-34461263|G/A|missense_variant;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT;ENST00000525707.1_1_11:34482779-34490041:+|nuORF ENSG00000121691|ENST00000241052|CAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.8769836425781 3 398.875739 1193.60539 0.27017 0.00010777 1.4586 0.0005818 1.7288 0.00068956 398.87677080122546 15.004 0.080258 12.477 12.453 12.533 -2.5273 17 12 2 0 0 0 0.57331 1 7676 7676 1.7423 0 1 1658500 79075 3594;14801 53004 54122 91848 91848 0.016329865462012094 YPEALSPL 8 Unmodified _YPEALSPL_ 0 0 0 nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 nc|ENSG00000079308|Q9HBL0-1|TNS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 889.467529296875 1 889.466561 888.459284 -0.53431 -0.00047525 1.0511 0.00093492 0.51679 0.00045967 889.4674013925109 93.251 0.81514 87.076 86.671 87.486 -6.1757 99 56 2 0 0 0 0.24071 1 61639 61639 63.563 3.1733 1 34090000 79076 1270 53005 54123 91849 91849 0.01059291257570294 YPEAVYVVY 9 Unmodified _YPEAVYVVY_ 0 0 0 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant;ENSG00000253710|ENST00000521508|ALG11 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7774047851562 2 551.776408 1101.53826 0.59873 0.00033036 0.40413 0.00022299 1.0029 0.00055335 551.776266790177 67.096 0.27883 67.096 66.992 67.271 0 18 11 2 0 0 0 0.49766 1 37452 37452 11.64 5.8799 1 754690 79077 14 53006 54124 91850 91850 -0.008444815081475099 YPEAVYVVY 9 Unmodified _YPEAVYVVY_ 0 0 0 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant;ENSG00000253710|ENST00000521508|ALG11 ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant ALG11|p.L424Afs*2|1|0.15|ENSG00000253710|chr13:52028367-52028368|-/G|frameshift_variant MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.776408 1101.53826 0.66269 0.00036565 -0.042992 -2.3722E-05 0.61969 0.00034193 551.776447778623 67.731 0.15733 67.249 67.142 67.299 -0.48218 0.076663 -0.00035565 NaN 11.64 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 390960 79078 14 53006 54124 -0.008444815081475099 YPEDDIEETF 10 Unmodified _YPEDDIEETF_ 0 0 0 nc|ENSG00000148634|Q5GLZ8-6|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4;ENST00000427635.6_1_10:69682690-69747802:-|nuORF nc|ENSG00000148634|Q5GLZ8-6|HERC4 nc|ENSG00000148634|Q5GLZ8-6|HERC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 629.2603759765625 2 629.261516 1256.50848 0.46605 0.00029327 -1.5368 -0.00096708 -1.0708 -0.00067381 629.2605453252304 57.606 0.31305 57.606 57.532 57.845 0 28 15 2 0 0 0 0.085354 1 32072 32072 49.933 28.186 1 4752700 79079 5949 53007 54125 91851 91851 -0.10951510034806233 YPEDEILHF 9 Unmodified _YPEDEILHF_ 0 0 0 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7753295898438 2 581.774396 1161.53424 0.39387 0.00022914 0.50751 0.00029526 0.90138 0.0005244 581.7747910972365 67.096 0.27366 67.096 66.952 67.226 0 18 11 2 0 0 0 0.2001 1 37426 37426 23.148 3.8914 1 1775800 79080 10007 53008 54126 91852 91852 -0.040065710018552636 YPEDLEFVY 9 Unmodified _YPEDLEFVY_ 0 0 0 nc|ENSG00000135108|O94952|FBXO21;ENSG00000135108|ENST00000622495|FBXO21 nc|ENSG00000135108|O94952|FBXO21 nc|ENSG00000135108|O94952|FBXO21 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 587.7696533203125 2 587.76878 1173.52301 0.093753 5.5105E-05 1.328 0.00078054 1.4217 0.00083564 587.7696808680868 76.4 0.36216 76.4 76.226 76.589 0 32 14 3 0 0 0 0.5029 2 42453 42453;42559 7.2892 3.3448 1 400900 79081 16205 53009 54127 91853;91854 91853 -0.05681393095983367 YPEDRDFRKY 10 Unmodified _YPEDRDFRKY_ 0 0 0 nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3 nc|ENSG00000173681|A2AJT9-3|BCLAF3 nc|ENSG00000173681|A2AJT9-3|BCLAF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.5580139160156 3 463.557964 1387.65206 0.17787 8.2452E-05 -1.1169 -0.00051777 -0.93907 -0.00043531 463.55768142420936 24.277 0.1595 24.277 24.227 24.386 0 22 11 2 0 0 0 0.70244 1 12392 12392 2.6312 1.5215 1 1226600 79082 8354 53010 54128 91855 91855 -0.026256184132080307 YPEDVAEEL 9 Unmodified _YPEDVAEEL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.7431030273438 2 532.742762 1063.47097 0.57095 0.00030417 0.31592 0.0001683 0.88687 0.00047247 532.7427338385775 53.271 0.29978 53.271 53.08 53.38 0 21 12 2 0 0 0 0.25681 1 29507 29507 19.257 5.7491 1 14662000 79083 1622 53011 54129 91856 91856 -0.05822556509747301 YPEDVAEEL 9 Unmodified _YPEDVAEEL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.74267578125 2 532.742762 1063.47097 1.1123 0.00059255 -0.65133 -0.00034699 0.46093 0.00024556 532.7426502903305 61.551 0.34792 55.375 55.228 55.576 -6.1757 28 17 2 0 0 0 0.019303 1 39688 39688 64.236 37.895 1 28692000 79084 1622 53011 54129 91857 91857 -0.05822556509747301 YPEDVAEEL 9 Unmodified _YPEDVAEEL_ 0 0 0 ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR ENSG00000092820|ENST00000367075|EZR MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 532.742762 1063.47097 0.57095 0.00030417 0.31592 0.0001683 0.88687 0.00047247 532.7427338385775 53.271 0.29978 53.271 53.08 53.38 0 0 0 NaN 19.257 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 14662000 79085 1622 53011 54129 -0.05822556509747301 YPEDVRQKVL 10 Unmodified _YPEDVRQKVL_ 0 0 0 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-4|PARP14 ENSG00000173193|ENST00000474629|PARP14 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.3452758789062 2 623.843145 1245.67174 -0.88928 -0.00055477 0.81393 0.00050777 -0.075351 -4.7007E-05 623.8433525358772 32.245 0.11246 32.245 32.204 32.316 0 7 5 2 0 0 0 0.23257 1 16866 16866 11.495 3.3392 1 2312600 79086 8296;16388 53012 54130 91858 91858 0.0587275759755812 YPEEDYESF 9 Unmodified _YPEEDYESF_ 0 0 0 nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89-5|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C nc|ENSG00000137145|Q5VZ89|DENND4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7305297851562 2 589.729852 1177.44515 -0.18214 -0.00010741 0.27298 0.00016099 0.090848 5.3576E-05 589.7299652355912 48.929 0.41603 48.929 48.736 49.152 0 28 19 2 0 0 0 0.30562 1 26902 26902 16.942 6.1184 1 2165600 79087 4903 53013 54131 91859 91859 -0.13647450752046097 YPEEISSMVL 10 Oxidation (M) _YPEEISSM(Oxidation (M))VL_ YPEEISSM(1)VL YPEEISSM(61)VL 0 0 1 ENSG00000173110|ENST00000309758|HSPA6;nc|ENSG00000225217|P48741|HSPA7;ENSG00000204388|ENST00000375650|HSPA1B;ENSG00000204389|ENST00000375651|HSPA1A ENSG00000173110|ENST00000309758|HSPA6;ENSG00000204388|ENST00000375650|HSPA1B ENSG00000204388|ENST00000375650|HSPA1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2811279296875 2 592.281197 1182.54784 0.14245 8.4372E-05 0.72922 0.0004319 0.87167 0.00051627 592.2815358227793 58.43 0.54437 58.43 58.154 58.699 0 66 21 4 0 0 0 0.043729 2 32548 32446;32548 61.357 39.611 1 15099000 79088 10277;8286 53014 54132 91860;91861 91861 1400 -0.036130812849251015 YPEELKPVL 9 Unmodified _YPEELKPVL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.3060302734375 2 544.305332 1086.59611 0.66584 0.00036242 -0.50638 -0.00027562 0.15946 8.6797E-05 544.3046854010847 54.745 0.34378 54.745 54.576 54.92 0 28 14 3 0 0 0 0.011671 1 30394 30394 75.761 43.455 1 7585400 79089 1295 53015 54133 91862 91862 0.056277804172850665 YPEELKPVL 9 Unmodified _YPEELKPVL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3051147460938 2 544.305332 1086.59611 0.11288 6.144E-05 -0.026675 -1.4519E-05 0.086204 4.6921E-05 544.305250130652 55.249 0.29777 54.771 54.629 54.926 -0.47798 23 13 2 0 0 0 0.017075 1 29942 29942 66.457 16.524 1 2668300 79090 1295 53015 54133 91863 91863 0.056277804172850665 YPEELKPVL 9 Unmodified _YPEELKPVL_ 0 0 0 nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 nc|ENSG00000080345|Q5UIP0-2|RIF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.2171020507812 2 544.305332 1086.59611 0.97537 0.0005309 -1.1457 -0.00062364 -0.17038 -9.2739E-05 544.3047299196775 61.112 0.30895 54.964 54.827 55.136 -6.1478 27 15 2 0 0 0 0.18735 1 39437 39437 25.399 17.489 1 24950000 79091 1295 53015 54133 91864 91864 0.056277804172850665 YPEEMIVAL 9 Oxidation (M) _YPEEM(Oxidation (M))IVAL_ YPEEM(1)IVAL YPEEM(42)IVAL 0 0 1 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7683715820312 2 540.767726 1079.5209 0.40529 0.00021917 2.1061 0.0011389 2.5114 0.0013581 540.7686934570494 66.583 0.41886 66.583 66.239 66.658 0 33 18 2 0 0 0 0.06187 1 37106 37106 42.095 29.563 1 2600000 79092 6956 53016 54134 91865 91865 1200 -0.01568145105466101 YPEEVSSMVL 10 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ YPEEVSSM(1)VL YPEEVSSM(78)VL 0 0 1 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.2722778320312 2 585.273372 1168.53219 -0.25455 -0.00014898 -0.19679 -0.00011518 -0.45134 -0.00026416 585.2733505236856 52.067 0.57429 52.067 51.802 52.376 0 82 25 4 0 0 0 0.017277 2 28724 28724;28845 78.149 44.047 1 52539000 79093 2688 53017 54135 91866;91867 91866 464 -0.045333678019687795 YPEEVSSMVL 10 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ YPEEVSSM(1)VL YPEEVSSM(61)VL 0 0 1 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2730712890625 2 585.273372 1168.53219 0.36457 0.00021338 0.41941 0.00024547 0.78398 0.00045884 585.2733313965873 52.601 0.33263 52.167 51.985 52.317 -0.43367 34 16 3 0 0 0 0.043729 1 28398 28398 61.357 27.255 1 4391200 79094 2688 53017 54135 91868 91868 464 -0.045333678019687795 YPEEVSSMVL 10 Oxidation (M) _YPEEVSSM(Oxidation (M))VL_ YPEEVSSM(1)VL YPEEVSSM(78)VL 0 0 1 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.27099609375 2 585.273372 1168.53219 0.89101 0.00052149 -0.48105 -0.00028154 0.40997 0.00023994 585.2729211680595 60.082 0.59021 53.968 53.604 54.194 -6.1147 48 32 2 0 0 0 0.017277 2 38726 38568;38726 78.149 44.047 1 40173000 79095 2688 53017 54135 91869;91870 91870 464 -0.045333678019687795 YPEEVSSMVL 10 Unmodified _YPEEVSSMVL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.27685546875 2 577.275915 1152.53728 0.50881 0.00029372 1.0357 0.00059791 1.5446 0.00089163 577.2765132181995 67.317 0.37266 67.317 67.132 67.505 0 32 15 3 0 0 0 0.42068 1 37506 37506 20.454 9.6297 1 1650400 79096 2688 53017 54136 91871 91871 -0.032890639393599486 YPEEVSSMVL 10 Unmodified _YPEEVSSMVL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.27734375 2 577.275915 1152.53728 0.7166 0.00041368 1.3646 0.00078778 2.0812 0.0012015 577.2769700998911 67.856 0.32939 67.374 67.189 67.518 -0.48218 22 14 2 0 0 0 0.42068 1 37085 37085 20.454 8.8133 1 977500 79097 2688 53017 54136 91872 91872 -0.032890639393599486 YPEEVSSMVL 10 Unmodified _YPEEVSSMVL_ 0 0 0 ENSG00000109971|ENST00000534624|HSPA8;nc|ENSG00000109971|P11142-2|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENST00000532780.5_1_11:122930757-122933127:-|nuORF ENSG00000109971|ENST00000534624|HSPA8 ENSG00000109971|ENST00000534624|HSPA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2770385742188 2 577.275915 1152.53728 1.0601 0.00061198 -1.0839 -0.0006257 -0.023776 -1.3725E-05 577.2750087226451 74.729 0.49506 68.554 68.306 68.801 -6.1757 60 25 3 0 0 0 0.02987 3 48757 48757;48875;49012 68.081 33.978 1 33672000 79098 2688 53017 54136 91873;91874;91875 91873 -0.032890639393599486 YPEFLLVF 8 Unmodified _YPEFLLVF_ 0 0 0 ENSG00000179363|ENST00000319560|TMEM31 ENSG00000179363|ENST00000319560|TMEM31 ENSG00000179363|ENST00000319560|TMEM31 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.3060913085938 2 514.278586 1026.54262 1.4368 0.00073894 0.7125 0.00036642 2.1493 0.0011054 514.2783455736846 46.6 0.1069 46.567 46.51 46.617 -0.033417 6 4 2 0 0 0 8.7369 1 25062 25062 2.5775 0 1 756400 79099 8831 53018 54137 91876 91876 0.030410277054443213 YPEGFEIHSM 10 Oxidation (M) _YPEGFEIHSM(Oxidation (M))_ YPEGFEIHSM(1) YPEGFEIHSM(68) 0 0 1 ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 ENSG00000068366|ENST00000672401|ACSL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 613.2628173828125 2 613.263339 1224.51212 0.68902 0.00042255 -0.056771 -3.4815E-05 0.63225 0.00038773 613.2632774189135 42.442 0.42476 42.442 42.238 42.663 0 34 20 2 0 0 0 0.02987 1 22995 22995 68.081 48.824 1 1859200 79100 977 53019 54138 91877 91877 157 -0.09115118741942752 YPEGVDVVY 9 Unmodified _YPEGVDVVY_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.250732421875 2 520.75039 1039.48623 -0.2402 -0.00012509 -0.95837 -0.00049907 -1.1986 -0.00062416 520.7498500884378 55.861 0.44935 55.861 55.713 56.162 0 49 27 2 0 0 0 0.06187 1 30977 30977 42.095 25.008 1 5625400 79101 8879 53020 54139 91878 91878 -0.03193644921907435 YPEGVDVVY 9 Unmodified _YPEGVDVVY_ 0 0 0 ENSG00000180011|ENST00000322342|PTGR3;nc|ENSG00000180011|Q8N4Q0-2|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 ENSG00000180011|ENST00000322342|PTGR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7504272460938 2 520.75039 1039.48623 1.5242 0.00079373 0.69927 0.00036415 2.2235 0.0011579 520.7506429721875 64.102 0.64658 57.926 57.669 58.315 -6.1757 57 34 2 0 0 0 0.10734 1 41552 41552 32.305 5.4218 1 15144000 79102 8879 53020 54139 91879 91879 -0.03193644921907435 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 643.3414916992188 2 643.342978 1284.6714 0.12615 8.1156E-05 -0.15629 -0.00010055 -0.030138 -1.9389E-05 643.3426252004699 67.871 0.32703 67.871 67.697 68.024 0 31 15 3 0 0 0 0.5942 1 37803 37803 14.405 6.7964 1 2018700 79103 3760 53021 54140 91880 91880 0.04045337877732891 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.3428344726562 2 643.342978 1284.6714 0.31866 0.00020501 0.39769 0.00025585 0.71635 0.00046086 643.3432444127118 68.344 0.47982 67.863 67.616 68.096 -0.48071 79 21 5 0 0 0 0.091371 2 37273 37273;37381 53.404 23.563 1 50574000 79104 3760 53021 54140 91881;91882 91881 0.04045337877732891 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.3426513671875 2 643.342978 1284.6714 0.45041 0.00028977 0.63044 0.00040559 1.0808 0.00069536 643.3433680040702 67.822 0.38724 67.84 67.647 68.035 0.018028 58 18 4 0 0 0 0.018102 2 37193 37193;37292 63.227 29.783 1 23447000 79105 3760 53021 54140 91883;91884 91883 0.04045337877732891 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.3430786132812 2 643.342978 1284.6714 0.43389 0.00027914 0.21411 0.00013775 0.648 0.00041689 643.3430520223384 82.517 1.7209 76.341 75.324 77.045 -6.1757 323 96 4 0 0 0 6.5068E-05 7 54571 53791;53922;54050;54177;54308;54437;54571 114.2 60.798 1 107220000 79106 3760 53021 54140 91885;91886;91887;91888;91889;91890;91891 91891 0.04045337877732891 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MSMS AL20221201_MKP_PDAC_01 4 643.3451538085938 2 643.342978 1284.6714 NaN NaN NaN NaN NaN NaN NaN 83.231 1 77.055 76.555 77.555 -6.1757 0 0 0 0.31193 1 54725 54725 40.239 15.248 1 79107 3760 53021 54140 91892 91892 0.04045337877732891 YPEHISNIISL 11 Unmodified _YPEHISNIISL_ 0 0 0 ENSG00000124201|ENST00000396105|ZNFX1;nc|ENSG00000124201|Q9P2E3-2|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 643.342978 1284.6714 0.26424 0.00016999 -0.5314 -0.00034187 -0.26717 -0.00017188 643.3427605397978 76.56 0.23293 76.609 76.421 76.654 0.048721 0.1339 -0.00086566 NaN 114.2 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1310100 79108 3760 53021 54140 0.04045337877732891 YPEIFSGL 8 Unmodified _YPEIFSGL_ 0 0 0 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 ENSG00000179542|ENST00000356928|SLITRK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 463.2366333007812 2 463.236919 924.459284 0.83621 0.00038736 -0.2415 -0.00011187 0.59471 0.00027549 463.23647528126475 52.982 0.28398 52.982 52.836 53.12 0 20 13 2 0 0 0 0.18881 1 29330 29330 74.396 10.833 1 1437900 79109 8842 53022 54141 91893 91893 -0.005967087424210149 YPEKIQASL 9 Unmodified _YPEKIQASL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7864379882812 2 524.787307 1047.56006 NaN NaN NaN NaN NaN NaN NaN 40.913 1 40.913 40.413 41.413 0 0 0 0 0.38798 1 22025 22025 27.629 3.6082 1 79110 3667 53023 54142 91894 91894 0.038183232404207956 YPEKIQASL 9 Unmodified _YPEKIQASL_ 0 0 0 nc|ENSG00000122882|O95905-3|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-2|ECD nc|ENSG00000122882|O95905-3|ECD nc|ENSG00000122882|O95905-3|ECD MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.790771484375 2 524.787307 1047.56006 0.56253 0.00029521 3.1985 0.0016785 3.761 0.0019737 524.7892689744082 46.284 0.23933 41.329 41.19 41.429 -4.9549 21 15 2 0 0 0 0.073961 1 28556 28556 41.956 10.687 1 19945000 79111 3667 53023 54142 91895 91895 0.038183232404207956 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.8045654296875 2 548.8055 1095.59645 -0.35003 -0.0001921 -0.25281 -0.00013875 -0.60284 -0.00033084 548.8051366266933 34.825 0.15942 34.634 34.541 34.7 -0.19132 9 6 2 0 0 0 0.098164 1 18229 18229 33.445 20.402 1 1611100 79112 4858 53024 54143 91896 91896 0.052472001371370425 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.8062744140625 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 40.099 1 39.802 39.302 40.302 -0.29716 0 0 0 0.026148 1 21183 21183 70.929 41.088 1 79113 4858 53024 54143 91897 91897 0.052472001371370425 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 548.8060302734375 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 39.708 1 39.713 39.213 40.213 0.0050545 0 0 0 0.16551 1 21155 21155 34.932 19.085 1 79114 4858 53024 54143 91898 91898 0.052472001371370425 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.2066650390625 3 366.206092 1095.59645 1.0319 0.0003779 1.0044 0.00036783 2.0363 0.00074572 366.2063266025632 38.765 0.20805 34.315 34.191 34.399 -4.4509 22 12 2 0 0 0 0.14594 1 22887 22887 21.799 12.255 1 11999000 79115 4858 53024 54143 91899 91899 0.052472001371370425 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MSMS AL20221201_MKP_PDAC_01 4 548.8055419921875 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 44.29 1 39.438 38.938 39.938 -4.852 0 0 0 0.0017495 1 27019 27019 128.57 80.824 1 79116 4858 53024 54143 91900 91900 0.052472001371370425 YPEKLATKF 9 Unmodified _YPEKLATKF_ 0 0 0 ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS ENSG00000136813|ENST00000684092|ECPAS ENSG00000136813|ENST00000684092|ECPAS MSMS AL20221201_MKP_PDAC_01 4 548.806640625 2 548.8055 1095.59645 NaN NaN NaN NaN NaN NaN NaN 44.49 1 39.638 39.138 40.138 -4.852 0 0 0 0.029307 1 27169 27169 67.081 44.423 1 79117 4858 53024 54143 91901 91901 0.052472001371370425 YPELIFVFGSF 11 Unmodified _YPELIFVFGSF_ 0 0 0 REV__ENST00000398970.5_1_17:1326381-1326564:-|nuORF REV__ENST00000398970.5_1_17:1326381-1326564:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 659.841796875 2 659.839539 1317.66453 NaN NaN NaN NaN NaN NaN NaN 41.314 1 36.706 36.206 37.206 -4.6079 0 0 0 0.85601 1 24795 24795 9.3831 1.2276 1 + 79118 26576 53025 54144 91902 91902 0.018400249971136873 YPELLVASY 9 Unmodified _YPELLVASY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.7767944335938 2 527.776408 1053.53826 0.61 0.00032194 -0.14325 -7.5605E-05 0.46675 0.00024634 527.7762432906005 74.703 0.42096 74.703 74.448 74.869 0 46 18 4 0 0 0 0.13231 2 41593 41499;41593 39.957 20.595 1 3265200 79119 1216 53026 54145 91903;91904 91904 0.01363518491848481 YPELLVASY 9 Unmodified _YPELLVASY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1054.547729492188 1 1054.54554 1053.53826 -0.22837 -0.00024083 1.4972 0.0015789 1.2689 0.0013381 1054.546796749077 74.647 0.22334 74.647 74.54 74.763 0 14 9 2 0 0 0 0.27545 1 41547 41547 25.399 10.561 1 494770 79120 1216 53026 54145 91905 91905 0.01363518491848481 YPELLVASY 9 Unmodified _YPELLVASY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7767944335938 2 527.776408 1053.53826 0.65175 0.00034398 -0.65128 -0.00034373 0.00046811 2.4706E-07 527.7758869144766 75.205 0.38922 74.728 74.495 74.884 -0.47714 46 17 3 0 0 0 0.11784 2 41170 41071;41170 34.102 18.255 1 4377100 79121 1216 53026 54145 91906;91907 91907 0.01363518491848481 YPELLVASY 9 Unmodified _YPELLVASY_ 0 0 0 nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF nc|ENSG00000077380|Q13409-6|DYNC1I2 nc|ENSG00000077380|Q13409-6|DYNC1I2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.7749633789062 2 527.776408 1053.53826 0.56291 0.00029709 -0.77895 -0.00041111 -0.21604 -0.00011402 527.7758441951701 82.585 0.51967 76.41 76.124 76.643 -6.1757 74 29 3 0 0 0 0.029718 2 54128 54128;54262 61.357 25.313 1 46084000 79122 1216 53026 54145 91908;91909 91908 0.01363518491848481 YPENGVVQM 9 Oxidation (M) _YPENGVVQM(Oxidation (M))_ YPENGVVQM(1) YPENGVVQM(60) 0 0 1 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7396850585938 2 526.739499 1051.46445 -0.2459 -0.00012952 -0.20039 -0.00010556 -0.44629 -0.00023508 526.7396384491078 28.657 0.59886 28.657 28.483 29.082 0 76 29 4 0 0 0 0.023481 1 14754 14754 60.074 33.19 1 40079000 79123 10914 53027 54146 91910 91910 1738 -0.059227729421081676 YPENGVVQM 9 Oxidation (M) _YPENGVVQM(Oxidation (M))_ YPENGVVQM(1) YPENGVVQM(82) 0 0 1 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.7390747070312 2 526.739499 1051.46445 1.4613 0.00076971 -0.56869 -0.00029955 0.89259 0.00047016 526.7394079253679 33.888 0.52339 29.903 29.643 30.167 -3.9853 91 28 4 0 0 0 0.009483 2 19406 19406;19531 81.89 37.483 1 79695000 79124 10914 53027 54146 91911;91912 91911 1738 -0.059227729421081676 YPENGVVQM 9 Unmodified _YPENGVVQM_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.7774658203125 2 518.742042 1035.46953 1.0384 0.00053864 -0.12605 -6.5389E-05 0.91231 0.00047325 518.7419774602984 52.9 0.61474 47.095 46.804 47.419 -5.8042 76 34 3 0 0 0 0.12771 1 33425 33425 34.402 11.253 1 88820000 79125 10914 53027 54147 91913 91913 -0.04678469079499337 YPENGVVQM 9 Unmodified _YPENGVVQM_ 0 0 0 nc|ENSG00000276043|Q96T88-2|UHRF1;ENSG00000276043|ENST00000650932|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 nc|ENSG00000276043|Q96T88-2|UHRF1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 1036.213134765625 1 1036.47681 1035.46953 0.82144 0.00085141 1.2383 0.0012834 2.0597 0.0021348 1036.477840173451 52.9 0.37759 47.095 46.906 47.284 -5.8042 24 20 2 0 0 0 3.3364E-11 1 33473 33473 155.03 87.682 1 17868000 79126 10914 53027 54147 91914 91914 -0.04678469079499337 YPENIVPSF 9 Unmodified _YPENIVPSF_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2671508789062 2 533.266207 1064.51786 0.37634 0.00020069 1.3392 0.00071415 1.7155 0.00091484 533.2667817519622 72.432 0.41724 72.432 72.219 72.637 0 48 16 4 0 0 0 0.010818 2 40371 40273;40371 78.149 44.047 1 3678500 79127 4676 53028 54148 91915;91916 91916 -0.01181652167952052 YPENIVPSF 9 Unmodified _YPENIVPSF_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.2667846679688 2 533.266207 1064.51786 0.61027 0.00032543 0.70674 0.00037688 1.317 0.00070232 533.2663558952538 72.929 0.48563 72.453 72.209 72.695 -0.47588 71 21 4 0 0 0 0.010818 2 39917 39821;39917 78.149 44.047 1 9604200 79128 4676 53028 54148 91917;91918 91918 -0.01181652167952052 YPENIVPSF 9 Unmodified _YPENIVPSF_ 0 0 0 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 ENSG00000135148|ENST00000412615|TRAFD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.265869140625 2 533.266207 1064.51786 0.63029 0.00033611 -0.12201 -6.5066E-05 0.50828 0.00027105 533.2660409273051 80.55 0.48904 74.375 74.135 74.624 -6.1757 63 26 4 0 0 0 0.010818 2 52757 52757;52882 78.149 43.661 1 82656000 79129 4676 53028 54148 91919;91920 91919 -0.01181652167952052 YPENVLILG 9 Unmodified _YPENVLILG_ 0 0 0 REV__ENSG00000175931|ENST00000319380|UBE2O REV__ENSG00000175931|ENST00000319380|UBE2O MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.284423828125 2 509.2844 1016.55425 NaN NaN NaN NaN NaN NaN NaN 95.234 1 94.866 94.366 95.366 -0.36814 0 0 0 0.8622 1 52020 52020 0 0 1 + 79130 22900 53029 54149 91921 91921 0.04663224728790283 YPEPAPAAL 9 Unmodified _YPEPAPAAL_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7422485351562 2 464.742368 927.470183 0.57405 0.00026678 -0.5586 -0.0002596 0.015449 7.1797E-06 464.74187128509124 50.396 0.28626 50.396 50.209 50.495 0 20 12 3 0 0 0 0.095405 1 27778 27778 34.102 3.8776 1 2066700 79131 8007 53030 54150 91922 91922 0.003546936318457483 YPEPAPAAL 9 Unmodified _YPEPAPAAL_ 0 0 0 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 ENSG00000170604|ENST00000302165|IRF2BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.4784545898438 1 928.47746 927.470183 0.33825 0.00031406 -1.1791 -0.0010947 -0.84081 -0.00078068 928.4768164829229 50.397 0.14616 50.397 50.331 50.477 0 9 6 2 0 0 0 0.038285 1 27783 27783 50.855 26.181 1 798250 79132 8007 53030 54150 91923 91923 0.003546936318457483 YPEPDMVDI 9 Unmodified _YPEPDMVDI_ 0 0 0 ENST00000461395.5_1_2:220378960-220396865:+|nuORF;nc|ENSG00000072182|Q96FT7-2|ASIC4;nc|ENSG00000072182|Q96FT7-1|ASIC4;ENSG00000072182|ENST00000358078|ASIC4 ENST00000461395.5_1_2:220378960-220396865:+|nuORF ENST00000461395.5_1_2:220378960-220396865:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.7100524902344 3 360.163564 1077.46886 0.77479 0.00027905 0.86258 0.00031067 1.6374 0.00058972 360.1639744573881 85.199 0.74522 79.023 78.785 79.53 -6.1757 108 45 4 0 0 0 0.21242 1 56350 56350 2.9952 0 1 63217000 79133 13660 53031 54151 91924 91924 -0.06677308519192593 YPEPFLIKL 9 Unmodified _YPEPFLIKL_ 0 0 0 nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP nc|ENSG00000163714|O15042-2|U2SURP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.3253784179688 2 560.326068 1118.63758 0.68924 0.0003862 -3.1134 -0.0017445 -2.4242 -0.0013583 560.3243758912448 85.029 0.14358 84.527 84.46 84.604 -0.5015 8 6 2 0 0 0 0.39863 1 46541 46541 12.532 5.2423 1 588800 79134 7056;16328 53032 54152 91925 91925 0.08300961176610144 YPEPQNKEAF 10 Unmodified _YPEPQNKEAF_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.7891845703125 2 611.790578 1221.5666 -1.108 -0.00067787 -0.16228 -9.9281E-05 -1.2703 -0.00077715 611.7902370586124 32.545 0.25089 32.545 32.444 32.695 0 34 15 3 0 0 0 0.0049466 1 16977 16977 98.73 65.944 1 12468000 79135 916 53033 54153 91926 91926 -0.03531783598873517 YPEPQNKEAF 10 Unmodified _YPEPQNKEAF_ 0 0 0 ENSG00000065833|ENST00000369705|ME1;nc|ENSG00000065833|P48163-2|ME1 ENSG00000065833|ENST00000369705|ME1 ENSG00000065833|ENST00000369705|ME1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.7913818359375 2 611.790578 1221.5666 1.1411 0.00069814 -0.15994 -9.785E-05 0.9812 0.00060029 611.790250086938 37.113 0.30891 32.83 32.682 32.991 -4.2835 39 18 3 0 0 0 0.002045 2 21717 21717;21856 108.26 68.312 1 9392000 79136 916 53033 54153 91927;91928 91927 -0.03531783598873517 YPEPYPLVY 9 Unmodified _YPEPYPLVY_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 570.785400390625 2 570.784233 1139.55391 0.72898 0.00041609 0.94077 0.00053698 1.6697 0.00095307 570.7852828335816 73.638 0.48395 73.638 73.485 73.969 0 42 20 3 0 0 0 0.2001 2 40960 40960;41062 23.148 7.3802 1 1217900 79137 8408 53034 54154 91929;91930 91929 -0.01028194991113196 YPEPYPLVY 9 Unmodified _YPEPYPLVY_ 0 0 0 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 ENSG00000174282|ENST00000380599|ZBTB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.7852172851562 2 570.784233 1139.55391 1.2316 0.00070297 0.9388 0.00053585 2.1704 0.0012388 570.7849783861176 81.308 0.41643 75.132 74.944 75.361 -6.1757 38 23 2 0 0 0 0.026094 2 53332 53332;53458 57.471 27.247 1 16339000 79138 8408 53034 54154 91931;91932 91931 -0.01028194991113196 YPEQDDSFF 9 Unmodified _YPEQDDSFF_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2322387695312 2 574.232561 1146.45057 0.38413 0.00022058 -0.81982 -0.00047077 -0.43569 -0.00025019 574.2319612451832 82.572 0.26373 82.572 82.41 82.673 0 16 10 2 0 0 0 0.58466 1 45823 45823 2.3027 0 1 816570 + 79139 24192 53035 54155 91933 91933 -0.11679727169575926 YPEQDDSFF 9 Unmodified _YPEQDDSFF_ 0 0 0 REV__nc|ENSG00000204634|O95759-2|TBC1D8 REV__nc|ENSG00000204634|O95759-2|TBC1D8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 574.232561 1146.45057 0.68214 0.00039171 -2.1638 -0.0012425 -1.4816 -0.00085079 574.2314119987616 83.053 0.20477 82.556 82.467 82.672 -0.49751 -0.0081714 -0.0011131 NaN 2.3027 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 861970 + 79140 24192 53035 54155 -0.11679727169575926 YPERLKKL 8 Unmodified _YPERLKKL_ 0 0 0 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 ENSG00000157653|ENST00000374165|C9orf43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.8212890625 2 523.821484 1045.62842 0.87384 0.00045774 -0.32094 -0.00016811 0.55291 0.00028962 523.8212492669079 41.143 0.36401 36.535 36.339 36.703 -4.6079 51 22 3 0 0 0 0.6895 1 24782 24782 18.135 2.8865 1 23618000 79141 6534 53036 54156 91934 91934 0.1074261261094307 YPESESIMM 9 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ YPESESIM(1)M(1) YPESESIM(71)M(71) 0 0 2 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7222290039062 2 559.722658 1117.43076 -0.20663 -0.00011566 -0.36567 -0.00020468 -0.57231 -0.00032033 559.7227711216418 28.879 0.60291 28.879 28.579 29.182 0 117 29 5 0 0 0 0.013472 3 14824 14824;14936;15036 70.716 48.969 1 89506000 79142 6889 53037 54157 91935;91936;91937 91935 1194;1195 -0.12325562496152997 YPESESIMM 9 2 Oxidation (M) _YPESESIM(Oxidation (M))M(Oxidation (M))_ YPESESIM(1)M(1) YPESESIM(89)M(89) 0 0 2 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.72412109375 2 559.722658 1117.43076 1.4587 0.00081645 -0.43533 -0.00024366 1.0233 0.00057278 559.7226688573182 34.084 0.68649 30.099 29.693 30.379 -3.9853 127 37 5 0 0 0 0.0086179 3 19413 19413;19542;19668 89.427 60.94 1 91368000 79143 6889 53037 54157 91938;91939;91940 91938 1194;1195 -0.12325562496152997 YPESESIMM 9 Oxidation (M) _YPESESIMM(Oxidation (M))_ YPESESIM(0.085)M(0.915) YPESESIM(-10)M(10) 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7250366210938 2 551.7252 1101.43585 0.43298 0.00023888 -0.87689 -0.0004838 -0.44391 -0.00024492 551.7249366485204 39.609 0.49228 39.609 39.4 39.892 0 70 23 4 0 0 0 0.013472 1 21306 21306 70.716 47.567 2 10037000 79144 6889 53037 54158 91941 91941 1194;1195 -0.11081258633566904 YPESESIMM 9 Oxidation (M) _YPESESIM(Oxidation (M))M_ YPESESIM(0.915)M(0.085) YPESESIM(10)M(-10) 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7252197265625 2 551.7252 1101.43585 0.15163 8.3656E-05 0.45503 0.00025105 0.60666 0.00033471 551.725511035723 45.394 0.55077 45.394 45.016 45.567 0 46 29 2 0 0 0 0.013472 2 24583 24583;24697 70.716 47.567 2 14594000 79145 6889 53037 54158 91942;91943 91942 1194;1195 -0.11081258633566904 YPESESIMM 9 Oxidation (M) _YPESESIM(Oxidation (M))M_ YPESESIM(0.999)M(0.001) YPESESIM(30)M(-30) 0 0 1 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.7263793945312 2 551.7252 1101.43585 0.96368 0.00053169 -1.0115 -0.00055809 -0.047849 -2.64E-05 551.7247997717653 52.717 0.75402 46.982 46.617 47.371 -5.7345 92 41 3 0 0 0 0.0083087 4 33127 33127;33238;33368;33485 97.075 72.401 2 94261000 79146 6889 53037 54158 91944;91945;91946;91947 91944 1194;1195 -0.11081258633566904 YPESESIMM 9 Unmodified _YPESESIMM_ 0 0 0 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 ENSG00000162654|ENST00000355754|GBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.727783203125 2 543.727743 1085.44093 0.83964 0.00045653 -1.0687 -0.00058108 -0.22907 -0.00012455 543.7277729406627 61.759 0.59626 55.584 55.309 55.905 -6.1757 92 31 4 0 0 0 0.03327 1 39712 39712 53.576 43.502 1 100200000 79147 6889 53037 54159 91948 91948 -0.09836954770935336 YPESEVIIKY 10 Unmodified _YPESEVIIKY_ 0 0 0 nc|ENSG00000185261|Q8IV33-3|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;ENSG00000185261|ENST00000682413|KIAA0825;nc|ENSG00000185261|Q8IV33-2|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 nc|ENSG00000185261|Q8IV33-3|KIAA0825 MSMS AL20221201_MKP_PDAC_01 4 620.8271484375 2 620.826629 1239.63871 NaN NaN NaN NaN NaN NaN NaN 58.376 1 52.302 51.802 52.802 -6.0745 0 0 0 0.029706 1 37400 37400 90.135 51.959 1 79148 9353 53038 54160 91949 91949 0.028471307548443292 YPESNSRAIF 10 Unmodified _YPESNSRAIF_ 0 0 0 nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2911376953125 2 592.290745 1182.56694 -0.12002 -7.1087E-05 0.12443 7.3697E-05 0.0044066 2.61E-06 592.2906726695804 42.043 0.53313 42.043 41.785 42.318 0 35 27 2 0 0 0 0.32533 1 22718 22718 29.841 13.993 1 4590000 79149 7426 53039 54161 91950 91950 -0.017043638790028126 YPESNSRAIF 10 Unmodified _YPESNSRAIF_ 0 0 0 nc|ENSG00000166037|Q86XR8-3|CEP57;nc|ENSG00000166037|Q86XR8-2|CEP57;nc|ENSG00000166037|Q86XR8-4|CEP57;nc|ENSG00000166037|Q86XR8-5|CEP57;ENSG00000166037|ENST00000325542|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 nc|ENSG00000166037|Q86XR8-3|CEP57 MSMS AL20221201_MKP_PDAC_01 4 592.290771484375 2 592.290745 1182.56694 NaN NaN NaN NaN NaN NaN NaN 46.898 1 41.817 41.317 42.317 -5.0805 0 0 0 0.17724 1 29046 29046 59.368 15.51 1 79150 7426 53039 54161 91951 91951 -0.017043638790028126 YPESVIQHL 9 Unmodified _YPESVIQHL_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.28515625 2 543.284931 1084.55531 0.47172 0.00025628 -0.81435 -0.00044243 -0.34263 -0.00018615 543.284325446559 50.789 0.48231 50.789 50.495 50.978 0 73 26 3 0 0 0 0.017075 2 27913 27913;28022 66.457 42.436 1 24158000 79151 2068 53040 54162 91952;91953 91952 0.016414390976706272 YPESVIQHL 9 Unmodified _YPESVIQHL_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2853393554688 2 543.284931 1084.55531 -0.18671 -0.00010144 1.5511 0.00084269 1.3644 0.00074126 543.285665606377 51.235 0.41162 50.822 50.557 50.969 -0.41351 61 20 4 0 0 0 0.039985 2 27652 27541;27652 49.933 13.889 1 9751100 79152 2068 53040 54162 91954;91955 91955 0.016414390976706272 YPESVIQHL 9 Unmodified _YPESVIQHL_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2857666015625 2 543.284931 1084.55531 0.47109 0.00025594 0.61139 0.00033216 1.0825 0.0005881 543.2854708045408 56.686 0.51084 50.709 50.412 50.923 -5.9769 94 29 4 0 0 0 0.0086209 2 36189 36055;36189 89.401 58.764 1 103670000 79153 2068 53040 54162 91956;91957 91957 0.016414390976706272 YPESVIQHLGY 11 Unmodified _YPESVIQHLGY_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 653.3277587890625 2 653.327328 1304.6401 0.1367 8.931E-05 0.50825 0.00033206 0.64496 0.00042137 653.3274258144068 56.903 0.32487 56.903 56.786 57.111 0 27 13 3 0 0 0 0.027203 1 31663 31663 67.081 49.638 1 1953600 79154 2068 53041 54163 91958 91958 -3.235156373193604E-05 YPESVIQHLGY 11 Unmodified _YPESVIQHLGY_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 653.326904296875 2 653.327328 1304.6401 0.4227 0.00027616 -0.63309 -0.00041362 -0.2104 -0.00013746 653.32696451251 57.548 0.45184 57.059 56.795 57.247 -0.48974 66 21 4 0 0 0 7.4307E-11 2 31288 31192;31288 132.38 103.89 1 17508000 79155 2068 53041 54163 91959;91960 91960 -3.235156373193604E-05 YPESVIQHLGY 11 Unmodified _YPESVIQHLGY_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 653.3282470703125 2 653.327328 1304.6401 1.0638 0.00069503 -0.49239 -0.00032169 0.57145 0.00037334 653.3271603786126 57.136 0.30275 57.07 56.879 57.181 -0.066036 22 14 2 0 0 0 0.0067789 1 31082 31082 69.338 40.844 1 3444300 79156 2068 53041 54163 91961 91961 -3.235156373193604E-05 YPESVIQHLGY 11 Unmodified _YPESVIQHLGY_ 0 0 0 nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN nc|ENSG00000102854|Q13421-4|MSLN nc|ENSG00000102854|Q13421-4|MSLN MULTI-MSMS AL20221201_MKP_PDAC_01 4 653.8292846679688 2 653.327328 1304.6401 0.75014 0.00049009 0.035822 2.3404E-05 0.78596 0.00051349 653.3275555379563 63.238 0.79488 57.062 56.857 57.652 -6.1757 123 44 4 0 0 0 1.4924E-20 4 40767 40767;40893;41037;41185 184.36 134.8 1 61478000 79157 2068 53041 54163 91962;91963;91964;91965 91962 -3.235156373193604E-05 YPETGHYI 8 Unmodified _YPETGHYI_ 0 0 0 ENSG00000119673|ENST00000238651|ACOT2;ENSG00000184227|ENST00000311148|ACOT1;nc|ENSG00000119673|P49753-2|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 ENSG00000119673|ENST00000238651|ACOT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.739501953125 2 490.229625 978.444697 0.012882 6.3151E-06 1.9388 0.00095047 1.9517 0.00095678 490.2299749421131 52.388 0.26741 52.388 52.199 52.467 0 17 11 2 0 0 0 8.7369 1 28886 28886 10.183 1.5901 1 725000 79158 3451 53042 54164 91966 91966 -0.04538780890561611 YPETHIICNSY 11 Carbamidomethyl (C) _YPETHIIC(Carbamidomethyl (C))NSY_ YPETHIIC(1)NSY YPETHIIC(180)NSY 0 1 0 nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 nc|ENSG00000165458|O15357-2|INPPL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 698.8146362304688 2 698.813727 1395.6129 0.72793 0.00050868 -0.0029667 -2.0731E-06 0.72496 0.00050661 698.8139720308582 47.867 0.36966 42.633 42.451 42.821 -5.2339 61 22 4 0 0 0 1.0643E-37 2 29837 29708;29837 179.28 135.51 1 27992000 79159 7340 53043 54165 91967;91968 91968 717 -0.06908086759062826 YPETLGRLLIL 11 Unmodified _YPETLGRLLIL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3871459960938 2 644.387188 1286.75982 0.47913 0.00030875 -0.12704 -8.1865E-05 0.35209 0.00022688 644.387024640397 89.54 0.41005 89.588 89.345 89.755 0.047852 37 14 3 0 0 0 0.00076978 2 49753 49753;49855 85.764 61.744 1 53872000 79160 4157 53044 54166 91969;91970 91969 0.12791378188217095 YPETLGRLLIL 11 Unmodified _YPETLGRLLIL_ 0 0 0 ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;nc|ENSG00000129657|Q92503-3|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 ENSG00000129657|ENST00000436233|SEC14L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.8890991210938 2 644.387188 1286.75982 0.91117 0.00058715 -0.46071 -0.00029688 0.45046 0.00029027 644.386932747595 99.403 0.17996 93.228 93.144 93.324 -6.1757 35 11 4 0 0 0 6.1613E-11 1 66162 66162 121.5 83.529 1 397380000 79161 4157 53044 54166 91971 91971 0.12791378188217095 YPETVQPE 8 Unmodified _YPETVQPE_ 0 0 0 nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B nc|ENSG00000169402|B2RC85-2|RSPH10B2 nc|ENSG00000169402|B2RC85-2|RSPH10B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7279968261719 2 481.726915 961.439277 NaN NaN NaN NaN NaN NaN NaN 32.4 1 32.4 31.9 32.9 0 0 0 0 0.88449 1 16924 16924 19.257 0 1 79162 6362 53045 54167 91972 91972 -0.04298504473035791 YPETVQPE 8 Unmodified _YPETVQPE_ 0 0 0 nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B nc|ENSG00000169402|B2RC85-2|RSPH10B2 nc|ENSG00000169402|B2RC85-2|RSPH10B2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7270812988281 2 481.726915 961.439277 NaN NaN NaN NaN NaN NaN NaN 32.574 1 32.574 32.074 33.074 0 0 0 0 0.88449 1 17031 17031 19.257 0 1 79163 6362 53045 54167 91973 91973 -0.04298504473035791 YPEVEESKF 9 Unmodified _YPEVEESKF_ 0 0 0 ENSG00000156222|ENST00000394573|SLC28A1;ENSG00000137860|ENST00000347644|SLC28A2 ENSG00000156222|ENST00000394573|SLC28A1 ENSG00000156222|ENST00000394573|SLC28A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2672119140625 2 564.266404 1126.51826 0.32734 0.00018471 -1.3657 -0.00077063 -1.0384 -0.00058592 564.2656477395481 58.552 0.44854 58.552 58.34 58.788 0 32 18 3 0 0 0 0.48152 1 32624 32624 8.5933 3.6963 1 1117300 79164 6440 53046 54168 91974 91974 -0.03994277238757604 YPEVVWSKPW 10 Unmodified _YPEVVWSKPW_ 0 0 0 ENST00000257572.5_1_12:117298148-117298622:-|nuORF ENST00000257572.5_1_12:117298148-117298622:-|nuORF ENST00000257572.5_1_12:117298148-117298622:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8885803222656 3 430.888763 1289.64446 NaN NaN NaN NaN NaN NaN NaN 18.744 1 16.123 15.623 16.623 -2.6215 0 0 0 0.99388 1 9892 9892 0.56317 0.15491 1 79165 11192 53047 54169 91975 91975 0.011222740571838585 YPEVYTIQI 9 Unmodified _YPEVYTIQI_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7;REV__ENST00000586702.1_1_19:11310175-11313198:-|nuORF REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8455810546875 2 563.294965 1124.57538 0.38614 0.00021751 2.2383 0.0012608 2.6245 0.0014783 563.2958188846148 61.72 0.26896 61.232 61.118 61.387 -0.48764 22 12 2 0 0 0 0.16418 1 33588 33588 25.399 12.868 1 2491900 + 79166 19051;19698 53048 54170 91976 91976 0.0180719003762988 YPEVYTIQI 9 Unmodified _YPEVYTIQI_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7;REV__ENST00000586702.1_1_19:11310175-11313198:-|nuORF REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 563.294965 1124.57538 0.93161 0.00052477 0.33987 0.00019144 1.2715 0.00071622 563.797225563137 67.041 0.50639 60.866 60.73 61.236 -6.1757 -0.18346 -0.00087498 NaN 25.399 42 27 2 NaN NaN NaN NaN 0 NaN NaN 0 16461000 + 79167 19051;19698 53048 54170 0.0180719003762988 YPEYDEVRM 9 Unmodified _YPEYDEVRM_ 0 0 0 REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.2974243164062 2 601.263339 1200.51212 0.21948 0.00013197 0.73209 0.00044018 0.95157 0.00057214 601.2636010881657 66.604 0.3097 66.121 65.925 66.235 -0.48323 22 14 2 0 0 0 0.21367 1 36401 36401 4.756 0 1 1436300 + 79168 22086 53049 54171 91977 91977 -0.08011118741933387 YPEYTGSNTY 10 Unmodified _YPEYTGSNTY_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7512817382812 2 597.751118 1193.48768 0.38745 0.0002316 0.60102 0.00035926 0.98846 0.00059085 597.7510836911172 36.778 0.2681 36.778 36.648 36.916 0 27 12 3 0 0 0 0.046375 1 19527 19527 60.074 18.118 1 2884100 79169 891 53050 54172 91978 91978 -0.10132055623785163 YPEYTGSNTY 10 Unmodified _YPEYTGSNTY_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 597.751118 1193.48768 -0.2299 -0.00013742 1.5112 0.00090331 1.2813 0.00076588 597.7516505357903 41.296 0.14877 36.688 36.624 36.772 -4.6079 -0.045123 0.00099678 NaN 60.074 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 10687000 79170 891 53050 54172 -0.10132055623785163 YPFAHPAIY 9 Unmodified _YPFAHPAIY_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7716064453125 2 539.77146 1077.52837 NaN NaN NaN NaN NaN NaN NaN 53.774 1 53.322 52.822 53.822 -0.45173 0 0 0 0.053568 1 29105 29105 56.048 30.649 1 79171 8645 53051 54173 91979 91979 -0.0072962472286235425 YPFAHPAIY 9 Unmodified _YPFAHPAIY_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.7717895507812 2 539.77146 1077.52837 NaN NaN NaN NaN NaN NaN NaN 53.42 1 53.357 52.857 53.857 -0.063423 0 0 0 0.053568 1 28973 28973 56.048 30.649 1 79172 8645 53051 54173 91980 91980 -0.0072962472286235425 YPFAHPAIY 9 Unmodified _YPFAHPAIY_ 0 0 0 ENSG00000176994|ENST00000406438|SMCR8;nc|ENSG00000176994|Q8TEV9-2|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.7723388671875 2 539.77146 1077.52837 0.89306 0.00048205 -1.7342 -0.00093608 -0.84114 -0.00045402 539.7709516462041 59.342 0.2966 53.228 53.041 53.337 -6.1147 22 16 2 0 0 0 0.028712 1 38048 38048 56.048 31.374 1 31479000 79173 8645 53051 54173 91981 91981 -0.0072962472286235425 YPFAPLILLY 10 Unmodified _YPFAPLILLY_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50;ENST00000393493.6_1_2:99232993-99234764:+|nuORF;ENST00000466492.1_1_2:99232887-99234764:+|nuORF ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3502807617188 2 605.349543 1208.68453 0.61425 0.00037184 1.2024 0.00072789 1.8167 0.0010997 605.3505695474546 102.36 0.098175 96.187 96.132 96.23 -6.1757 20 7 4 0 0 0 0.14518 1 68683 68683 40.449 8.3316 1 17799000 79174 3125 53052 54174 91982 91982 0.08853820727767925 YPFCSQISHF 10 Unmodified _YPFCSQISHF_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5201110839844 3 410.186703 1227.53828 -0.23967 -9.8311E-05 -1.3839 -0.00056767 -1.6236 -0.00066598 410.18639315528895 35.273 0.11991 35.3 35.211 35.33 0.027405 7 5 2 0 0 0 0.66569 1 18646 18646 6.1918 4.1058 1 2420400 + 79175 22785 53053 54175 91983 91983 -0.06638804779800012 YPFCSQISHF 10 Unmodified _YPFCSQISHF_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 410.186703 1227.53828 -0.23967 -9.8311E-05 -1.3839 -0.00056767 -1.6236 -0.00066598 410.18639315528895 35.273 0.11991 35.3 35.211 35.33 0.027405 0.1557 0.00087795 NaN 6.1918 7 5 2 NaN NaN NaN NaN 0 NaN NaN 0 2420400 + 79176 22785 53053 54175 -0.06638804779800012 YPFCSQISHF 10 Unmodified _YPFCSQISHF_ 0 0 0 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 REV__nc|ENSG00000174332|Q8NBF1|GLIS1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 410.186703 1227.53828 1.0226 0.00041947 -2.5134 -0.001031 -1.4908 -0.0006115 410.185521724737 39.439 0.25093 34.989 34.84 35.091 -4.4509 -0.1557 -0.00051196 NaN 6.1918 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 9468500 + 79177 22785 53053 54175 -0.06638804779800012 YPFDEFSNPY 10 Unmodified _YPFDEFSNPY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.7693481445312 2 639.769311 1277.52407 0.20073 0.00012842 0.1259 8.0544E-05 0.32663 0.00020897 639.7696799790741 70.957 0.22227 70.48 70.389 70.611 -0.47735 18 9 3 0 0 0 0.69064 1 38857 38857 3.9444 2.1002 1 1018600 79178 10367 53054 54176 91984 91984 -0.10359178727094331 YPFDEFSNPY 10 Unmodified _YPFDEFSNPY_ 0 0 0 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.7703857421875 2 639.769311 1277.52407 0.73139 0.00046792 0.56501 0.00036148 1.2964 0.0008294 639.7696349881858 79.045 0.3062 72.869 72.68 72.986 -6.1757 27 16 2 0 0 0 0.024981 1 51729 51729 71.134 50.719 1 8822500 79179 10367 53054 54176 91985 91985 -0.10359178727094331 YPFDGHNEGTL 11 Unmodified _YPFDGHNEGTL_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.27734375 2 625.277835 1248.54112 NaN NaN NaN NaN NaN NaN NaN 44.709 1 44.709 44.209 45.209 0 0 0 0 0.00076678 1 24340 24340 80.896 23.646 1 79180 4989 53055 54177 91986 91986 -0.07321258121282881 YPFDGHNEGTL 11 Unmodified _YPFDGHNEGTL_ 0 0 0 nc|ENSG00000137942|Q5T0N5-2|FNBP1L;nc|ENSG00000137942|Q5T0N5-5|FNBP1L;ENSG00000137942|ENST00000271234|FNBP1L;nc|ENSG00000137942|Q5T0N5-3|FNBP1L;nc|ENSG00000137942|Q5T0N5-4|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L nc|ENSG00000137942|Q5T0N5-2|FNBP1L MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.278564453125 2 625.277835 1248.54112 0.74822 0.00046784 2.3531 0.0014713 3.1013 0.0019392 625.2793115820323 51.197 0.38285 45.548 45.354 45.737 -5.649 38 23 2 0 0 0 0.010729 3 32252 32106;32119;32252 67.081 21.06 1 33969000 79181 4989 53055 54177 91987;91988;91989 91989 -0.07321258121282881 YPFDGPGNTL 10 Unmodified _YPFDGPGNTL_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7533569335938 2 540.753464 1079.49238 0.42045 0.00022736 -0.80277 -0.0004341 -0.38232 -0.00020674 540.7531363296201 59.446 0.6478 59.446 59.148 59.796 0 90 28 4 0 0 0 0.035736 3 33225 33015;33116;33225 65.235 27.261 1 62500000 79182 4956 53056 54178 91990;91991;91992 91992 -0.044191266903681026 YPFDGPGNTL 10 Unmodified _YPFDGPGNTL_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.75341796875 2 540.753464 1079.49238 -0.036494 -1.9734E-05 -0.6291 -0.00034019 -0.6656 -0.00035992 540.7529107031569 60.108 0.55358 59.618 59.352 59.906 -0.49079 64 27 4 0 0 0 0.11755 2 32668 32668;32772 43.858 25.712 1 23517000 79183 4956 53056 54178 91993;91994 91993 -0.044191266903681026 YPFDGPGNTL 10 Unmodified _YPFDGPGNTL_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.75390625 2 540.753464 1079.49238 0.28877 0.00015615 1.1568 0.00062553 1.4455 0.00078168 540.7540969103202 59.702 0.28153 59.649 59.574 59.856 -0.053062 22 13 2 0 0 0 0.095098 1 32601 32601 47.749 16.48 1 2013400 79184 4956 53056 54178 91995 91995 -0.044191266903681026 YPFDGPGNTL 10 Unmodified _YPFDGPGNTL_ 0 0 0 ENSG00000137673|ENST00000260227|MMP7;ENST00000533366.5_1_11:102395628-102401431:-|nuORF ENSG00000137673|ENST00000260227|MMP7 ENSG00000137673|ENST00000260227|MMP7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.7543334960938 2 540.753464 1079.49238 0.51454 0.00027824 -0.80396 -0.00043475 -0.28943 -0.00015651 540.7534246089202 67.561 0.66303 61.386 61.091 61.754 -6.1757 118 37 4 0 0 0 0.095098 2 43908 43908;44040 47.749 17.112 1 186520000 79185 4956 53056 54178 91996;91997 91996 -0.044191266903681026 YPFDQNRFVQY 11 Unmodified _YPFDQNRFVQY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 738.849365234375 2 738.848958 1475.68336 0.13984 0.00010332 0.32354 0.00023905 0.46338 0.00034237 738.8494292149762 57.949 0.14597 57.459 57.41 57.556 -0.48974 12 6 2 0 0 0 0.46131 1 31534 31534 18.373 11.271 1 1134200 79186 16013 53057 54179 91998 91998 -0.03545045379109979 YPFDQNRFVQY 11 Unmodified _YPFDQNRFVQY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MSMS AL20221201_MKP_PDAC_01 4 738.850341796875 2 738.848958 1475.68336 NaN NaN NaN NaN NaN NaN NaN 64.952 1 58.777 58.277 59.277 -6.1757 0 0 0 3.1201E-07 1 42123 42123 97.741 64.955 1 79187 16013 53057 54179 91999 91999 -0.03545045379109979 YPFDQNRFVQY 11 Unmodified _YPFDQNRFVQY_ 0 0 0 nc|ENSG00000006712|Q8N7H5-3|PAF1;ENSG00000006712|ENST00000221265|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENST00000595797.5_1_19:39880250-39881561:-|nuORF nc|ENSG00000006712|Q8N7H5-3|PAF1 nc|ENSG00000006712|Q8N7H5-3|PAF1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 738.848958 1475.68336 0.92973 0.00068693 0.46853 0.00034617 1.3983 0.0010331 738.8487793988801 57.56 0.17576 57.494 57.418 57.593 -0.066036 0.017392 9.0029E-05 NaN 18.373 15 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1387000 79188 16013 53057 54179 -0.03545045379109979 YPFDRAEKF 9 Unmodified _YPFDRAEKF_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5293273925781 3 391.529346 1171.56621 0.03865 1.5133E-05 0.17756 6.9518E-05 0.21621 8.4651E-05 391.52948734912906 39.753 0.31741 39.753 39.575 39.892 0 35 15 3 0 0 0 0.21643 1 21309 21309 20.581 9.7814 1 4695300 79189 4782 53058 54180 92000 92000 -0.012711585280840154 YPFDRAEKF 9 Unmodified _YPFDRAEKF_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.5291442871094 3 391.529346 1171.56621 0.32663 0.00012788 -0.48775 -0.00019097 -0.16113 -6.3086E-05 391.5292155054277 40.157 0.29514 39.86 39.668 39.963 -0.29716 28 13 3 0 0 0 0.34134 1 21187 21187 14.957 4.1577 1 3057500 79190 4782 53058 54180 92001 92001 -0.012711585280840154 YPFDRAEKF 9 Unmodified _YPFDRAEKF_ 0 0 0 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 ENSG00000136051|ENST00000332180|WASHC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5291442871094 3 391.529346 1171.56621 0.86401 0.00033828 0.61248 0.0002398 1.4765 0.00057809 391.52953761510463 44.701 0.35242 39.849 39.73 40.083 -4.852 46 28 2 0 0 0 0.19127 1 27283 27283 22.658 13.114 1 19761000 79191 4782 53058 54180 92002 92002 -0.012711585280840154 YPFDSPQVMF 10 Oxidation (M) _YPFDSPQVM(Oxidation (M))F_ YPFDSPQVM(1)F YPFDSPQVM(100)F 0 0 1 ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENSG00000104343|ENST00000602593|UBE2W ENSG00000104343|ENST00000602593|UBE2W MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.7764282226562 2 623.776082 1245.53761 0.64149 0.00040014 -0.14788 -9.2245E-05 0.49361 0.0003079 623.7762014134349 74.356 0.56853 73.88 73.613 74.182 -0.47588 82 23 4 0 0 0 0.0032765 2 40696 40696;40795 103.75 76.865 1 13660000 79192 2197 53059 54181 92003;92004 92003 377 -0.07533644219529378 YPFDSPQVMF 10 Oxidation (M) _YPFDSPQVM(Oxidation (M))F_ YPFDSPQVM(1)F YPFDSPQVM(54)F 0 0 1 ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENSG00000104343|ENST00000602593|UBE2W ENSG00000104343|ENST00000602593|UBE2W MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 623.776611328125 2 623.776082 1245.53761 0.51701 0.0003225 -0.79202 -0.00049404 -0.27501 -0.00017154 623.7762123958992 73.852 0.36185 73.896 73.734 74.096 0.043983 41 16 3 0 0 0 0.067957 1 40696 40696 53.833 43.009 1 5382300 79193 2197 53059 54181 92005 92005 377 -0.07533644219529378 YPFDSPQVMF 10 Oxidation (M) _YPFDSPQVM(Oxidation (M))F_ YPFDSPQVM(1)F YPFDSPQVM(92)F 0 0 1 ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENSG00000104343|ENST00000602593|UBE2W ENSG00000104343|ENST00000602593|UBE2W MULTI-MSMS AL20221201_MKP_PDAC_01 4 623.7786254882812 2 623.776082 1245.53761 0.71065 0.00044329 -0.099982 -6.2367E-05 0.61067 0.00038092 623.7762819170166 81.752 0.57511 75.576 75.308 75.883 -6.1757 99 32 4 0 0 0 0.0073675 3 53552 53552;53677;53803 92.491 73.107 1 57748000 79194 2197 53059 54181 92006;92007;92008 92006 377 -0.07533644219529378 YPFDSPQVMF 10 Unmodified _YPFDSPQVMF_ 0 0 0 ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENSG00000104343|ENST00000602593|UBE2W ENSG00000104343|ENST00000602593|UBE2W MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.779296875 2 615.778625 1229.5427 NaN NaN NaN NaN NaN NaN NaN 85.25 1 84.749 84.249 85.249 -0.5015 0 0 0 0.85122 1 46645 46645 10.074 5.7447 1 79195 2197 53059 54182 92009 92009 -0.0628934035689781 YPFDSPQVMF 10 Unmodified _YPFDSPQVMF_ 0 0 0 ENSG00000104343|ENST00000602593|UBE2W;nc|ENSG00000104343|Q96B02-2|UBE2W;nc|ENSG00000104343|Q96B02-3|UBE2W ENSG00000104343|ENST00000602593|UBE2W ENSG00000104343|ENST00000602593|UBE2W MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.7788696289062 2 615.778625 1229.5427 -0.0019839 -1.2216E-06 -0.25713 -0.00015834 -0.25911 -0.00015956 615.7785407755009 93.268 0.71547 87.092 86.788 87.504 -6.1757 103 49 3 0 0 0 0.024115 4 61831 61576;61703;61831;61970 71.922 56.075 1 45653000 79196 2197 53059 54182 92010;92011;92012;92013 92012 -0.0628934035689781 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5365295410156 3 410.536501 1228.58767 -0.071172 -2.9219E-05 -0.074999 -3.079E-05 -0.14617 -6.0009E-05 410.536604616797 35.855 0.55893 35.855 35.515 36.074 0 88 27 4 0 0 0 0.07087 3 18839 18839;18951;19061 30.703 16.145 1 42590000 79197 9795 53060 54183 92014;92015;92016 92014 -0.017477734993462946 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.5363159179688 3 410.536501 1228.58767 -0.46432 -0.00019062 0.11802 4.845E-05 -0.34631 -0.00014217 410.5365374201253 36.046 0.70966 35.822 35.448 36.158 -0.22397 87 31 4 0 0 0 0.044011 3 18994 18782;18888;18994 37.075 24.071 1 29723000 79198 9795 53060 54183 92017;92018;92019 92019 -0.017477734993462946 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5362548828125 3 410.536501 1228.58767 -0.30902 -0.00012686 -0.2848 -0.00011692 -0.59382 -0.00024379 410.53619227032357 35.675 0.45432 35.7 35.474 35.928 0.024967 35 21 2 0 0 0 0.085319 2 18863 18863;18970 28.234 14.619 1 4647400 79199 9795 53060 54183 92020;92021 92020 -0.017477734993462946 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5366821289062 3 410.536501 1228.58767 0.4724 0.00019394 -0.04115 -1.6894E-05 0.43125 0.00017704 410.5364774464712 40.142 0.9107 35.613 35.171 36.082 -4.5294 180 68 4 0 0 0 0.014417 4 23989 23723;23855;23989;24118 55.235 36.862 1 169100000 79200 9795 53060 54183 92022;92023;92024;92025 92024 -0.017477734993462946 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.8021240234375 2 615.301113 1228.58767 0.2087 0.00012841 -0.67322 -0.00041423 -0.46452 -0.00028582 615.3004043255607 40.133 0.72787 35.604 35.307 36.035 -4.5294 99 56 3 0 0 0 0.0032147 2 23889 23889;24023 125.53 60.294 1 43337000 79201 9795 53060 54183 92026;92027 92026 -0.017477734993462946 YPFENKREF 9 Unmodified _YPFENKREF_ 0 0 0 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 ENSG00000196305|ENST00000443024|IARS1 MSMS AL20221201_MKP_PDAC_01 4 615.3009643554688 2 615.301113 1228.58767 NaN NaN NaN NaN NaN NaN NaN 39.905 1 35.376 34.876 35.876 -4.5294 0 0 0 0.014715 1 23751 23751 85.642 37.296 1 79202 9795 53060 54183 92028 92028 -0.017477734993462946 YPFESAEAQL 10 Unmodified _YPFESAEAQL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7723388671875 2 577.771854 1153.52915 0.66551 0.00038451 0.48283 0.00027897 1.1483 0.00066348 577.7719101770049 60.62 0.44962 60.62 60.388 60.838 0 63 19 4 0 0 0 0.0057604 2 33829 33728;33829 96.285 63.499 1 4906900 79203 7600 53061 54184 92029;92030 92030 -0.04146874864477468 YPFESAEAQL 10 Unmodified _YPFESAEAQL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7717895507812 2 577.771854 1153.52915 0.86222 0.00049817 0.11638 6.7239E-05 0.9786 0.00056541 577.7718103005666 68.557 0.40414 62.381 62.187 62.592 -6.1757 38 23 2 0 0 0 0.041224 1 44748 44748 62.573 38.552 1 19670000 79204 7600 53061 54184 92031 92031 -0.04146874864477468 YPFESAEAQLL 11 Unmodified _YPFESAEAQLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.31396484375 2 634.313886 1266.61322 0.10556 6.6957E-05 -0.3005 -0.00019061 -0.19494 -0.00012365 634.3135542445888 77.36 0.38019 77.36 77.068 77.448 0 41 18 3 0 0 0 0.0069872 2 43001 42897;43001 71.922 47.902 1 2285100 79205 7600 53062 54185 92032;92033 92033 -0.009423437675877722 YPFESAEAQLL 11 Unmodified _YPFESAEAQLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3128051757812 2 634.313886 1266.61322 -1.1762 -0.00074606 1.3287 0.00084284 0.15258 9.6781E-05 634.314787934754 77.865 0.39003 77.382 77.066 77.456 -0.4826 43 21 3 0 0 0 0.13715 1 42659 42659 38.176 28.792 1 2405900 79206 7600 53062 54185 92034 92034 -0.009423437675877722 YPFESAEAQLL 11 Unmodified _YPFESAEAQLL_ 0 0 0 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 ENSG00000167325|ENST00000300738|RRM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3141479492188 2 634.313886 1266.61322 0.75841 0.00048107 0.0028252 1.7921E-06 0.76124 0.00048286 634.3136405750412 85.917 0.54946 79.741 79.407 79.957 -6.1757 71 30 3 0 0 0 1.3103E-08 3 56609 56471;56609;56738 107.19 65.347 1 27840000 79207 7600 53062 54185 92035;92036;92037 92036 -0.009423437675877722 YPFFPTSY 8 Unmodified _YPFFPTSY_ 0 0 0 REV__ENSG00000170927|ENST00000371117|PKHD1 REV__ENSG00000170927|ENST00000371117|PKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.236083984375 2 511.236919 1020.45928 -0.54016 -0.00027615 -3.2162 -0.0016442 -3.7563 -0.0019204 511.23502412074663 30.487 0.14342 30.487 30.402 30.546 0 11 6 2 0 0 0 0.61462 1 15841 15841 24.674 0 1 2106700 + 79208 22523 53063 54186 92038 92038 -0.05012708742435734 YPFFRGVTI 9 Unmodified _YPFFRGVTI_ 0 0 0 ENSG00000151465|ENST00000281141|CDC123;ENST00000467016.1_1_10:12238244-12240776:+|nuORF ENSG00000151465|ENST00000281141|CDC123 ENSG00000151465|ENST00000281141|CDC123 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.3004760742188 2 550.300384 1098.58622 0.75492 0.00041543 0.50377 0.00027723 1.2587 0.00069266 550.3003572408714 91.335 0.6481 85.16 84.804 85.452 -6.1757 61 36 2 0 0 0 0.10134 2 60450 60328;60450 36.506 18.371 1 21451000 79209 6115 53064 54187 92039;92040 92040 0.04086637202590282 YPFGDRPI 8 Unmodified _YPFGDRPI_ 0 0 0 REV__ENST00000532627.5_1_6:26365525-26369063:+|nuORF REV__ENST00000532627.5_1_6:26365525-26369063:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7477111816406 2 482.747985 963.481417 -0.082703 -3.9925E-05 -0.10244 -4.9451E-05 -0.18514 -8.9375E-05 482.7478476339881 55.901 0.23835 55.423 55.3 55.538 -0.47798 19 11 2 0 0 0 0.76266 1 30383 30383 11.64 0.81637 1 1639100 + 79210 28468 53065 54188 92041 92041 -0.001784842740107706 YPFHDSDPSAL 11 Unmodified _YPFHDSDPSAL_ 0 0 0 ENSG00000173334|ENST00000311922|TRIB1;nc|ENSG00000173334|Q96RU8-2|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 ENSG00000173334|ENST00000311922|TRIB1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.7817993164062 2 624.78021 1247.54587 NaN NaN NaN NaN NaN NaN NaN 44.979 1 44.979 44.479 45.479 0 0 0 0 0.041329 1 24497 24497 81.89 53.396 1 79211 8317 53066 54189 92042 92042 -0.0680037397853539 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.8830261230469 3 426.548629 1276.62406 0.5831 0.00024872 -0.13253 -5.6531E-05 0.45057 0.00019219 426.5485388581228 28.814 0.49318 28.752 28.473 28.966 -0.062159 78 20 5 0 0 0 0.015688 2 14793 14793;14899 77.049 54.274 1 119100000 79212 1780 53067 54190 92043;92044 92043 -0.003188966026300477 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.3194580078125 2 639.319306 1276.62406 0.34654 0.00022155 0.020498 1.3105E-05 0.36704 0.00023465 639.3192520260902 28.809 0.39304 28.747 28.528 28.921 -0.06216 48 16 4 0 0 0 0.00089362 2 14913 14816;14913 114.19 91.45 1 18737000 79213 1780 53067 54190 92045;92046 92046 -0.003188966026300477 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.5486450195312 3 426.548629 1276.62406 0.17032 7.2648E-05 -0.07918 -3.3774E-05 0.091136 3.8874E-05 426.5485829435831 28.666 0.47245 28.695 28.444 28.917 0.029564 68 18 5 0 0 0 0.014503 2 14884 14884;14983 62.78 47.041 1 74978000 79214 1780 53067 54190 92047;92048 92047 -0.003188966026300477 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 639.8209228515625 2 639.319306 1276.62406 0.16267 0.000104 -0.15511 -9.9164E-05 0.0075629 4.8351E-06 639.3192704496976 28.666 0.32651 28.695 28.52 28.846 0.029564 38 12 4 0 0 0 0.024351 2 14895 14895;14995 71.708 52.59 1 13669000 79215 1780 53067 54190 92049;92050 92049 -0.003188966026300477 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5494079589844 3 426.548629 1276.62406 1.1802 0.00050342 -0.07735 -3.2994E-05 1.1029 0.00047043 426.5484943207895 32.48 0.62582 28.624 28.319 28.945 -3.8562 146 34 6 0 0 0 0.03037 3 18358 18358;18487;18617 59.013 40.766 1 801140000 79216 1780 53067 54190 92051;92052;92053 92051 -0.003188966026300477 YPFHKQPPTY 10 Unmodified _YPFHKQPPTY_ 0 0 0 nc|ENSG00000100258|Q9BU23-3|LMF2;nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF nc|ENSG00000100258|Q9BU23-3|LMF2 nc|ENSG00000100258|Q9BU23-3|LMF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 639.3189697265625 2 639.319306 1276.62406 0.81636 0.00052191 0.37024 0.0002367 1.1866 0.00075861 639.3194556376354 32.488 0.48058 28.631 28.352 28.832 -3.8562 94 26 4 0 0 0 5.5445E-08 3 18382 18382;18513;18632 143.91 116.28 1 200630000 79217 1780 53067 54190 92054;92055;92056 92054 -0.003188966026300477 YPFHSHVPL 9 Unmodified _YPFHSHVPL_ 0 0 0 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 ENSG00000174279|ENST00000308618|EVX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 548.7799072265625 2 548.782359 1095.55016 0.91751 0.00050352 -1.7754 -0.0009743 -0.85787 -0.00047079 548.7803065520566 32.455 0.29044 28.599 28.463 28.753 -3.8562 21 15 2 0 0 0 0.019979 1 18531 18531 63.563 25.412 1 7967200 79218 8407 53068 54191 92057 92057 0.006211800257005962 YPFHWAGD 8 Unmodified _YPFHWAGD_ 0 0 0 ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A ENSG00000065060|ENST00000192788|BLTP3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7166748046875 2 496.716685 991.418816 NaN NaN NaN NaN NaN NaN NaN 2.8034 1 2.7314 2.2314 3.2314 -0.072029 0 0 0 0.97444 1 1384 1384 0 0 1 79219 890 53069 54192 92058 92058 -0.0772363034219552 YPFIGDVHSL 10 Unmodified _YPFIGDVHSL_ 0 0 0 ENSG00000131374|ENST00000696125|TBC1D5;nc|ENSG00000131374|Q92609|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.290771484375 2 574.292756 1146.57096 NaN NaN NaN NaN NaN NaN NaN 69.009 1 68.529 68.029 69.029 -0.48071 0 0 0 0.02703 1 37724 37724 85.272 58.388 1 79220 4318 53070 54193 92059 92059 0.003537256147183143 YPFIGDVHSL 10 Unmodified _YPFIGDVHSL_ 0 0 0 ENSG00000131374|ENST00000696125|TBC1D5;nc|ENSG00000131374|Q92609|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 ENSG00000131374|ENST00000696125|TBC1D5 MSMS AL20221201_MKP_PDAC_01 4 574.2928466796875 2 574.292756 1146.57096 NaN NaN NaN NaN NaN NaN NaN 77.499 1 71.323 70.823 71.823 -6.1757 0 0 0 0.016839 1 50693 50693 115.69 67.346 1 79221 4318 53070 54193 92060 92060 0.003537256147183143 YPFIIDAHL 9 Unmodified _YPFIIDAHL_ 0 0 0 nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 nc|ENSG00000136891|Q9NXF1-2|TEX10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.7930908203125 2 544.792392 1087.57023 -0.29298 -0.00015961 1.712 0.0009327 1.419 0.00077309 544.793212931471 78.596 0.23026 78.11 78.035 78.265 -0.48596 21 8 3 0 0 0 0.023164 1 43054 43054 60.39 42.255 1 769500 79222 4878 53071 54194 92061 92061 0.029949309656331025 YPFIISSESY 10 Unmodified _YPFIISSESY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.2547607421875 2 603.289879 1204.56521 0.25067 0.00015123 0.5671 0.00034213 0.81777 0.00049336 603.2898657087135 73.821 0.21249 73.821 73.688 73.901 0 14 8 2 0 0 0 0.23566 1 41077 41077 7.2892 2.0586 1 352740 79223 10766 53072 54195 92062 92062 -0.028894176876065103 YPFIISSESY 10 Unmodified _YPFIISSESY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 603.2896118164062 2 603.289879 1204.56521 0.7052 0.00042544 -1.3644 -0.0008231 -0.65915 -0.00039766 603.2887278634265 74.316 0.40449 73.84 73.593 73.997 -0.47588 34 16 3 0 0 0 0.6192 1 40641 40641 16.942 9.0321 1 2090800 79224 10766 53072 54195 92063 92063 -0.028894176876065103 YPFIISSESY 10 Unmodified _YPFIISSESY_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.28955078125 2 603.289879 1204.56521 0.36381 0.00021948 0.27961 0.00016869 0.64342 0.00038817 603.2897864073211 81.768 0.33405 75.592 75.427 75.761 -6.1757 31 18 2 0 0 0 0.095786 1 53698 53698 67.344 44.195 1 14796000 79225 10766 53072 54195 92064 92064 -0.028894176876065103 YPFKPPKIAF 10 Unmodified _YPFKPPKIAF_ 0 0 0 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.2334594726562 3 403.233982 1206.68012 0.090695 3.6571E-05 -0.43569 -0.00017568 -0.34499 -0.00013911 403.5681933236411 62.212 0.97616 62.18 61.691 62.667 -0.032787 150 50 4 0 0 0 0.17253 4 34021 33811;33915;34021;34135 37.075 27.531 1 37592000 79226 1081 53073 54196 92065;92066;92067;92068 92067 0.08504356304842986 YPFKPPKIAF 10 Unmodified _YPFKPPKIAF_ 0 0 0 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.2346801757812 3 403.233982 1206.68012 1.1359 0.00045804 0.22207 8.9545E-05 1.358 0.00054758 403.23401416141115 86.067 1.0893 79.891 79.308 80.397 -6.1757 180 60 4 0 0 0 0.17253 5 56759 56501;56632;56759;56887;57016 37.075 26.759 1 114820000 79227 1081 53073 54196 92069;92070;92071;92072;92073 92071 0.08504356304842986 YPFKPPKIAF 10 Unmodified _YPFKPPKIAF_ 0 0 0 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 ENSG00000072401|ENST00000373910|UBE2D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.3489379882812 2 604.347335 1206.68012 0.53648 0.00032422 0.29006 0.0001753 0.82653 0.00049951 604.3476154021581 85.96 0.78905 79.785 79.407 80.196 -6.1757 77 43 2 0 0 0 0.0015532 3 56663 56518;56663;56803 96.111 67.029 1 21653000 79228 1081 53073 54196 92074;92075;92076 92075 0.08504356304842986 YPFKPPKITF 10 Unmodified _YPFKPPKITF_ 0 0 0 nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.2373046875 3 413.237504 1236.69068 0.13535 5.5933E-05 0.06771 2.798E-05 0.20306 8.3914E-05 413.23749887938993 62.55 1.8075 62.529 61.242 63.049 -0.021614 221 92 4 0 0 0 0.10078 6 34020 33806;33916;34020;34133;34245;34357 46.475 31.518 1 88588000 79229 9394 53074 54197 92077;92078;92079;92080;92081;92082 92079 0.08180338959255096 YPFKPPKITF 10 Unmodified _YPFKPPKITF_ 0 0 0 nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 413.2377319335938 3 413.237504 1236.69068 0.65126 0.00026912 0.32809 0.00013558 0.97935 0.0004047 413.2376078414668 85.574 1.6317 79.398 78.766 80.397 -6.1757 274 94 4 0 0 0 0.093652 5 56338 56083;56211;56338;56474;56604 48.073 37.174 1 294510000 79230 9394 53074 54197 92083;92084;92085;92086;92087 92085 0.08180338959255096 YPFKPPKITF 10 Unmodified _YPFKPPKITF_ 0 0 0 nc|ENSG00000185651|P68036-2|UBE2L3;ENSG00000185651|ENST00000342192|UBE2L3;ENST00000496722.1_1_22:21922618-21975955:+|nuORF;nc|ENSG00000185651|P68036-3|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 nc|ENSG00000185651|P68036-2|UBE2L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.3534545898438 2 619.352617 1236.69068 0.23113 0.00014315 0.051567 3.1938E-05 0.28269 0.00017509 619.3527500002075 85.619 0.96664 79.443 78.957 79.924 -6.1757 147 57 3 0 0 0 3.4918E-05 5 56241 56108;56241;56375;56513;56641 124.95 86.777 1 62104000 79231 9394 53074 54197 92088;92089;92090;92091;92092 92089 0.08180338959255096 YPFKPPKVAF 10 Unmodified _YPFKPPKVAF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.5619201660156 3 398.562099 1192.66447 -0.41064 -0.00016366 0.16685 6.65E-05 -0.24379 -9.7165E-05 398.56208864642326 56.346 1.5417 56.278 55.238 56.78 -0.068741 288 79 6 0 0 0 0.11654 7 30209 30209;30313;30415;30525;30625;30736;30842 43.982 35.006 1 638230000 79232 2644;1259 53075 54198 92093;92094;92095;92096;92097;92098;92099 92093 0.07584069787799308 YPFKPPKVAF 10 Unmodified _YPFKPPKVAF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 597.33935546875 2 597.33951 1192.66447 -0.39814 -0.00023782 0.24809 0.0001482 -0.15004 -8.9627E-05 597.3395678630159 56.267 0.89038 56.198 55.626 56.517 -0.068737 137 46 4 0 0 0 0.010233 4 30547 30438;30547;30659;30773 75.761 54.224 1 52629000 79233 2644;1259 53075 54198 92100;92101;92102;92103 92101 0.07584069787799308 YPFKPPKVAF 10 Unmodified _YPFKPPKVAF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5624694824219 3 398.562099 1192.66447 0.71936 0.00028671 0.29119 0.00011606 1.0105 0.00040277 398.5621061538307 77.892 3.468 71.716 69.319 72.787 -6.1757 582 197 5 0 0 0 0.17253 16 50368 49516;49642;49772;50006;50129;50251;50368;50485;50607;50726;50844;50974;51099;51220;51345;51587 37.075 31.291 1 941360000 79234 2644;1259 53075 54198 92104;92105;92106;92107;92108;92109;92110;92111;92112;92113;92114;92115;92116;92117;92118;92119 92110 0.07584069787799308 YPFKPPKVAF 10 Unmodified _YPFKPPKVAF_ 0 0 0 ENSG00000109332|ENST00000453744|UBE2D3;nc|ENSG00000109332|P61077-3|UBE2D3;ENST00000511691.1_1_5:138980019-139003047:+|nuORF;nc|ENSG00000131508|P62837-2|UBE2D2;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4;nc|ENSG00000109332|P61077-2|UBE2D3 ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000078967|ENST00000222402|UBE2D4 ENSG00000109332|ENST00000453744|UBE2D3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 597.339111328125 2 597.33951 1192.66447 0.12224 7.302E-05 0.1019 6.0867E-05 0.22414 0.00013389 597.3394199374787 77.921 2.0517 71.746 70.333 72.384 -6.1757 352 116 4 0 0 0 0.0032515 11 51150 50164;50278;50392;50508;50633;50764;50893;51027;51150;51275;51408 78.728 55.992 1 185300000 79235 2644;1259 53075 54198 92120;92121;92122;92123;92124;92125;92126;92127;92128;92129;92130 92128 0.07584069787799308 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5655517578125 3 408.56562 1222.67503 -0.23247 -9.498E-05 0.18649 7.6195E-05 -0.045978 -1.8785E-05 408.56562707430135 56.438 1.1711 56.37 55.743 56.915 -0.068737 246 60 5 0 0 0 0.10406 5 30481 30481;30581;30691;30792;30895 49.742 34.785 1 518450000 79236 9035 53076 54199 92131;92132;92133;92134;92135 92131 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3453979492188 2 612.344792 1222.67503 0.25975 0.00015906 0.041752 2.5567E-05 0.30151 0.00018463 612.344620336395 56.467 0.87492 56.399 55.885 56.76 -0.068741 109 44 3 0 0 0 0.012329 4 30549 30549;30660;30769;30873 83.429 58.438 1 28852000 79237 9035 53076 54199 92136;92137;92138;92139 92136 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5662231445312 3 408.56562 1222.67503 0.64455 0.00026334 0.30146 0.00012317 0.94601 0.00038651 408.56568204527565 77.402 2.891 71.227 69.235 72.126 -6.1757 587 161 5 0 0 0 0.051223 16 50962 49380;49512;49637;49770;49885;49996;50118;50237;50348;50463;50584;50702;50832;50962;51086;51210 57.108 51.765 1 538420000 79238 9035 53076 54199 92140;92141;92142;92143;92144;92145;92146;92147;92148;92149;92150;92151;92152;92153;92154;92155 92153 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3450927734375 2 612.344792 1222.67503 0.71154 0.00043571 3.7142 0.0022744 4.4257 0.0027101 612.346835587647 76.153 0.16805 69.978 69.836 70.004 -6.1757 11 8 2 0 0 0 0.0086576 1 49835 49835 90.135 63.867 1 7830000 79239 9035 53076 54199 92156 92156 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3455200195312 2 612.344792 1222.67503 0.44329 0.00027144 0.27901 0.00017085 0.7223 0.00044229 612.3449602717311 77.427 1.8075 71.251 70.201 72.008 -6.1757 268 101 3 0 0 0 0.01173 8 50915 50190;50302;50428;50550;50668;50797;50915;51041 84.522 56.028 1 89683000 79240 9035 53076 54199 92157;92158;92159;92160;92161;92162;92163;92164 92163 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MSMS AL20221201_MKP_PDAC_01 4 612.3455200195312 2 612.344792 1222.67503 NaN NaN NaN NaN NaN NaN NaN 78.193 1 72.018 71.518 72.518 -6.1757 0 0 0 0.073691 1 51171 51171 53.404 28.413 1 79241 9035 53076 54199 92165 92165 0.07260052442211418 YPFKPPKVTF 10 Unmodified _YPFKPPKVTF_ 0 0 0 ENSG00000182247|ENST00000396703|UBE2E2;ENST00000411687.1_1_X:14262689-14263010:+|nuORF;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000170035|ENST00000410062|UBE2E3 ENSG00000182247|ENST00000396703|UBE2E2 ENSG00000182247|ENST00000396703|UBE2E2 MSMS AL20221201_MKP_PDAC_01 4 408.5655212402344 3 408.56562 1222.67503 NaN NaN NaN NaN NaN NaN NaN 78.45 1 72.274 71.774 72.774 -6.1757 0 0 0 0.6416 1 51350 51350 17.049 9.5715 1 79242 9035 53076 54199 92166 92166 0.07260052442211418 YPFKSPSIGF 10 Unmodified _YPFKSPSIGF_ 0 0 0 ENSG00000186591|ENST00000355621|UBE2H;ENST00000486283.1_1_7:129497270-129520783:-|nuORF ENSG00000186591|ENST00000355621|UBE2H ENSG00000186591|ENST00000355621|UBE2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7988891601562 2 571.797675 1141.5808 1.1892 0.00068 -0.45812 -0.00026195 0.73111 0.00041805 571.7972992905169 70.882 0.82838 64.706 64.496 65.324 -6.1757 50 41 2 0 0 0 0.039874 1 46471 46471 63.227 30.922 1 21291000 79243 9486 53077 54200 92167 92167 0.0156691362010406 YPFLDSPNKY 10 Unmodified _YPFLDSPNKY_ 0 0 0 nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF nc|ENSG00000183337|Q6W2J9-2|BCOR nc|ENSG00000183337|Q6W2J9-2|BCOR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3057250976562 2 622.303321 1242.59209 NaN NaN NaN NaN NaN NaN NaN 53.622 1 53.17 52.67 53.67 -0.45173 0 0 0 0.33727 1 29016 29016 34.932 14.061 1 79244 9138 53078 54201 92168 92168 -0.019503090764374065 YPFLENHRL 9 Unmodified _YPFLENHRL_ 0 0 0 ENST00000475124.1_1_3:53892285-53892672:+|nuORF ENST00000475124.1_1_3:53892285-53892672:+|nuORF ENST00000475124.1_1_3:53892285-53892672:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.8776550292969 3 396.876857 1187.60874 0.32012 0.00012705 0.93959 0.0003729 1.2597 0.00049995 396.8772184666719 4.9967 0.10667 2.5147 2.4633 2.57 -2.482 62 44 2 0 0 0 0.57331 1 2565 2565 2.9952 0 1 3645800 79245 13952 53079 54202 92169 92169 0.022442366001541814 YPFLLPTSSSF 11 Unmodified _YPFLLPTSSSF_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.822021484375 2 629.821347 1257.62814 2.1931 0.0013812 0.1784 0.00011236 2.3715 0.0014936 629.8214928275543 95.212 0.37439 95.216 95.03 95.404 0.0041504 33 13 3 0 0 0 0.6607 1 52930 52930 14.838 5.4908 1 1648800 79246 4767 53080 54203 92170 92170 0.009631481004134912 YPFLLPTSSSF 11 Unmodified _YPFLLPTSSSF_ 0 0 0 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 ENSG00000135966|ENST00000393359|TGFBRAP1 MSMS AL20221201_MKP_PDAC_01 4 629.8229370117188 2 629.821347 1257.62814 NaN NaN NaN NaN NaN NaN NaN 100.16 1 93.984 93.484 94.484 -6.1757 0 0 0 0.73964 1 66912 66912 25.399 14.575 1 79247 4767 53080 54203 92171 92171 0.009631481004134912 YPFNPPKVRF 10 Unmodified _YPFNPPKVRF_ 0 0 0 nc|ENSG00000078140|P61086-3|UBE2K;ENSG00000078140|ENST00000261427|UBE2K nc|ENSG00000078140|P61086-3|UBE2K nc|ENSG00000078140|P61086-3|UBE2K MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2324523925781 3 422.232752 1263.67643 -0.4681 -0.00019765 0.45531 0.00019225 -0.012795 -5.4026E-06 422.5673561614486 55.939 0.52736 55.87 55.666 56.194 -0.068737 64 27 3 0 0 0 0.18439 2 30503 30402;30503 35.612 27.667 1 10174000 79248 1238 53081 54204 92172;92173 92173 0.05513686530957784 YPFNPPKVRF 10 Unmodified _YPFNPPKVRF_ 0 0 0 nc|ENSG00000078140|P61086-3|UBE2K;ENSG00000078140|ENST00000261427|UBE2K nc|ENSG00000078140|P61086-3|UBE2K nc|ENSG00000078140|P61086-3|UBE2K MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2335510253906 3 422.232752 1263.67643 1.2156 0.00051327 -0.63357 -0.00026751 0.58204 0.00024576 422.56688137075736 74.962 1.0531 68.787 68.285 69.338 -6.1757 88 56 2 0 0 0 0.13008 3 49269 48945;49121;49269 42.312 33.868 1 15211000 79249 1238 53081 54204 92174;92175;92176 92176 0.05513686530957784 YPFPENYTR 9 Unmodified _YPFPENYTR_ 0 0 0 REV__ENSG00000177994|ENST00000398634|C2orf73 REV__ENSG00000177994|ENST00000398634|C2orf73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.782470703125 2 593.780013 1185.54547 0.47599 0.00028263 1.3495 0.00080131 1.8255 0.0010839 593.7811708516927 52.733 0.25967 52.281 52.159 52.419 -0.45173 37 12 4 0 0 0 0.25681 1 28492 28492 19.257 8.4331 1 6223000 + 79250 23015 53082 54205 92177 92177 -0.03987748907729838 YPFPLPVF 8 Unmodified _YPFPLPVF_ 0 0 0 ENSG00000145414|ENST00000274054|NAF1 ENSG00000145414|ENST00000274054|NAF1 ENSG00000145414|ENST00000274054|NAF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2679443359375 2 490.268022 978.521491 0.64716 0.00031728 0.23163 0.00011356 0.87879 0.00043084 490.2681570166268 86.457 0.34634 85.954 85.769 86.115 -0.50318 22 14 2 0 0 0 0.80975 1 47290 47290 0.79363 0.10326 1 518580 79251 5695 53083 54206 92178 92178 0.031370623965585764 YPFPVPPL 8 Unmodified _YPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 929.513671875 1 929.513117 928.50584 0.33574 0.00031208 0.64084 0.00059567 0.97658 0.00090775 929.5134945615972 94.962 0.56244 94.594 94.338 94.9 -0.36814 40 27 2 0 0 0 0.5245 3 51809 51809;51902;52000 32.454 17.872 1 347060 79252 3763 53084 54207 92179;92180;92181 92179 0.03872775879517576 YPFPVPPL 8 Unmodified _YPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2609252929688 2 465.260197 928.50584 NaN NaN NaN NaN NaN NaN NaN 94.797 1 94.377 93.877 94.877 -0.42044 0 0 0 0.94749 1 51786 51786 11.114 0 1 79253 3763 53084 54207 92182 92182 0.03872775879517576 YPFPVPPL 8 Unmodified _YPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2597351074219 2 465.260197 928.50584 NaN NaN NaN NaN NaN NaN NaN 95.186 1 94.818 94.318 95.318 -0.36814 0 0 0 0.62523 1 51994 51994 32.454 15.367 1 79254 3763 53084 54207 92183 92183 0.03872775879517576 YPFPVPPL 8 Unmodified _YPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 929.5152587890625 1 929.513117 928.50584 1.2301 0.0011434 -0.34369 -0.00031946 0.88643 0.00082395 929.5130435240303 100.25 0.31587 94.07 93.938 94.254 -6.1757 30 19 2 0 0 0 0.12772 2 66929 66929;67086 91.927 59.473 1 48283000 79255 3763 53084 54207 92184;92185 92184 0.03872775879517576 YPFPVPPL 8 Unmodified _YPFPVPPL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2633666992188 2 465.260197 928.50584 1.1765 0.00054736 1.6313 0.000759 2.8078 0.0013064 465.26117937295476 100.24 0.30398 94.066 93.924 94.228 -6.1757 39 18 3 0 0 0 0.42709 1 66951 66951 41.817 0 1 43254000 79256 3763 53084 54207 92186 92186 0.03872775879517576 YPFPVPPLL 9 Unmodified _YPFPVPPLL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 521.8032836914062 2 521.802229 1041.5899 -0.2568 -0.000134 1.6206 0.00084564 1.3638 0.00071164 521.8026464238172 101.06 0.13956 101.02 100.95 101.09 -0.04216 8 4 2 0 0 0 0.028712 1 56166 56166 56.048 30.649 1 3438100 79257 3763 53085 54208 92187 92187 0.07077306976430009 YPFPVPPLL 9 Unmodified _YPFPVPPLL_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.8031616210938 2 521.802229 1041.5899 0.82915 0.00043265 0.36348 0.00018966 1.1926 0.00062232 521.8024355289917 101.66 0.17183 95.48 95.373 95.545 -6.1757 20 8 3 0 0 0 0.016115 1 68237 68237 67.413 42.014 1 40478000 79258 3763 53085 54208 92188 92188 0.07077306976430009 YPFPVPPLLY 10 Unmodified _YPFPVPPLLY_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 603.3333740234375 2 603.333893 1204.65323 -0.67817 -0.00040917 0.84929 0.00051241 0.17112 0.00010324 603.334277456729 101.25 0.18906 101.2 101.11 101.3 -0.04216 22 6 4 0 0 0 0.012597 1 56248 56248 82.939 60.203 1 32838000 79259 3763 53086 54209 92189 92189 0.059092476936712046 YPFPVPPLLY 10 Unmodified _YPFPVPPLLY_ 0 0 0 nc|ENSG00000124214|O95793-2|STAU1;nc|ENSG00000124214|O95793-3|STAU1;ENSG00000124214|ENST00000371856|STAU1 nc|ENSG00000124214|O95793-2|STAU1 nc|ENSG00000124214|O95793-2|STAU1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 603.335693359375 2 603.333893 1204.65323 0.15002 9.051E-05 0.12539 7.565E-05 0.2754 0.00016616 603.3337378923352 101.71 0.17503 95.535 95.443 95.618 -6.1757 35 11 4 0 0 0 0.025277 1 68249 68249 70.865 53.752 1 330320000 79260 3763 53086 54209 92190 92190 0.059092476936712046 YPFQDSEPVL 10 Unmodified _YPFQDSEPVL_ 0 0 0 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 ENSG00000101255|ENST00000217233|TRIB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.7864990234375 2 597.787504 1193.56045 0.11088 6.6284E-05 -0.50697 -0.00030306 -0.39609 -0.00023678 597.7869301989974 69.257 0.33147 69.257 69.046 69.377 0 36 14 3 0 0 0 0.13391 2 38533 38533;38641 41.84 31.016 1 3203900 79261 1937 53087 54210 92191;92192 92191 -0.02858301830383425 YPFRLNEASF 10 Unmodified _YPFRLNEASF_ 0 0 0 ENSG00000008282|ENST00000455385|SYPL1;nc|ENSG00000008282|Q16563|SYPL1 ENSG00000008282|ENST00000455385|SYPL1 ENSG00000008282|ENST00000455385|SYPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.3078002929688 2 622.308938 1242.60332 0.25603 0.00015933 1.6404 0.0010208 1.8964 0.0011802 622.3103705148931 63.468 0.26302 62.982 62.841 63.104 -0.48617 29 11 3 0 0 0 0.0044938 1 34596 34596 100.09 73.207 1 4603500 79262 382 53088 54211 92193 92193 -0.008274869823026165 YPFRLNEASF 10 Unmodified _YPFRLNEASF_ 0 0 0 ENSG00000008282|ENST00000455385|SYPL1;nc|ENSG00000008282|Q16563|SYPL1 ENSG00000008282|ENST00000455385|SYPL1 ENSG00000008282|ENST00000455385|SYPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.31201171875 2 622.308938 1242.60332 0.54559 0.00033953 2.1473 0.0013363 2.6929 0.0016758 622.3106413061178 63.019 0.20139 62.998 62.908 63.109 -0.021614 18 9 2 0 0 0 0.039874 1 34512 34512 63.227 35.599 1 6188300 79263 382 53088 54211 92194 92194 -0.008274869823026165 YPFRVGELEY 10 Unmodified _YPFRVGELEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 636.8175048828125 2 636.816596 1271.61864 0.068929 4.3895E-05 1.0451 0.00066552 1.114 0.00070942 636.8170871940825 63.773 0.28938 63.773 63.59 63.879 0 30 11 3 0 0 0 0.087164 1 35532 35532 49.527 34.279 1 3440000 79264 7704 53089 54212 92195 92195 -0.0063062018509754125 YPFRVGELEY 10 Unmodified _YPFRVGELEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.8174438476562 2 636.816596 1271.61864 0.38947 0.00024802 1.1014 0.00070137 1.4908 0.00094939 636.8172055358092 64.289 0.37924 63.804 63.592 63.971 -0.48513 57 17 4 0 0 0 0.024351 2 35116 35018;35116 71.708 50.171 1 23953000 79265 7704 53089 54212 92196;92197 92197 -0.0063062018509754125 YPFRVGELEY 10 Unmodified _YPFRVGELEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 636.8185424804688 2 636.816596 1271.61864 0.88418 0.00056306 1.2197 0.00077672 2.1039 0.0013398 636.817941365361 63.789 0.30986 63.778 63.59 63.9 -0.010532 27 14 3 0 0 0 0.03037 1 34912 34912 67.838 31.711 1 4977100 79266 7704 53089 54212 92198 92198 -0.0063062018509754125 YPFRVGELEY 10 Unmodified _YPFRVGELEY_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 636.8176879882812 2 636.816596 1271.61864 0.65948 0.00041997 -0.020232 -1.2884E-05 0.63925 0.00040708 636.8167858275374 73.295 0.90246 67.12 66.562 67.464 -6.1757 76 44 2 0 0 0 8.3247E-06 3 47913 47913;48030;48143 128.93 88.983 1 26581000 79267 7704 53089 54212 92199;92200;92201 92199 -0.0063062018509754125 YPFSEVLAY 9 Unmodified _YPFSEVLAY_ 0 0 0 ENST00000433258.5_1_2:71215729-71221885:-|nuORF;ENSG00000144043|ENST00000272438|TEX261 ENST00000433258.5_1_2:71215729-71221885:-|nuORF;ENSG00000144043|ENST00000272438|TEX261 ENSG00000144043|ENST00000272438|TEX261 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7696533203125 2 544.768583 1087.52261 0.94476 0.00051468 1.2996 0.00070799 2.2444 0.0012227 544.7682063877003 88.611 0.52066 82.435 82.079 82.599 -6.1757 35 28 2 0 0 0 0.027803 1 58510 58510 56.541 14.447 1 15244000 79268 5580;13286 53090 54213 92202 92202 -0.01764768025191188 YPFSREKMYLY 11 Unmodified _YPFSREKMYLY_ 0 0 0 ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2 ENSG00000047617|ENST00000682330|ANO2 ENSG00000047617|ENST00000682330|ANO2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 748.8659057617188 2 748.865763 1495.71697 0.53554 0.00040104 0.37071 0.00027761 0.90624 0.00067865 748.8659769988934 100.64 0.18211 94.466 94.374 94.556 -6.1757 31 12 3 0 0 0 0.48615 1 67344 67344 17.113 3.2068 1 68526000 79269 687 53091 54214 92203 92203 -0.01105759931533612 YPFSSEQKW 9 Unmodified _YPFSSEQKW_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.2750244140625 2 586.274564 1170.53457 0.42155 0.00024714 0.31654 0.00018558 0.73808 0.00043272 586.2754521946396 48.213 0.33081 47.86 47.634 47.964 -0.3526 29 16 3 0 0 0 0.011671 1 25853 25853 75.761 35.811 1 3915900 79270 502 53092 54215 92204 92204 -0.043871512820032876 YPFSSEQKW 9 Unmodified _YPFSSEQKW_ 0 0 0 nc|ENSG00000017260|P98194-2|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 nc|ENSG00000017260|P98194-2|ATP2C1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7760009765625 2 586.274564 1170.53457 0.69681 0.00040852 -2.0395 -0.0011957 -1.3427 -0.00078717 586.2727770126444 53.386 0.30869 47.582 47.436 47.745 -5.8042 34 19 2 0 0 0 0.00044362 1 33718 33718 145.13 103.29 1 32763000 79271 502 53092 54215 92205 92205 -0.043871512820032876 YPFSSPLHL 9 Unmodified _YPFSSPLHL_ 0 0 0 nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.7767333984375 2 530.776742 1059.53893 -0.1067 -5.6632E-05 0.59617 0.00031643 0.48948 0.0002598 530.7765591857881 69.974 0.17509 69.495 69.34 69.515 -0.47903 17 7 3 0 0 0 0.052168 1 38211 38211 44.407 14.182 1 1713000 79272 5330 53093 54216 92206 92206 0.011543579315684838 YPFSSPLHL 9 Unmodified _YPFSSPLHL_ 0 0 0 nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 nc|ENSG00000141441|Q9H706-2|GAREM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.77685546875 2 530.776742 1059.53893 0.43948 0.00023327 -0.16671 -8.8486E-05 0.27277 0.00014478 530.7760483134273 69.351 0.21893 69.382 69.295 69.514 0.030914 15 13 2 0 0 0 0.013472 1 38134 38134 70.716 17.14 1 8290900 79273 5330 53093 54216 92207 92207 0.011543579315684838 YPFSSSNDEEL 11 Unmodified _YPFSSSNDEEL_ 0 0 0 ENSG00000158092|ENST00000481752|NCK1;nc|ENSG00000158092|P16333-2|NCK1;ENST00000482071.1_1_3:136664576-136665812:+|nuORF ENSG00000158092|ENST00000481752|NCK1 ENSG00000158092|ENST00000481752|NCK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 644.2741088867188 2 644.272415 1286.53028 0.21534 0.00013874 0.13522 8.7121E-05 0.35057 0.00022586 644.2726176808335 53.233 0.26634 53.233 53.061 53.327 0 24 11 3 0 0 0 0.47965 1 29450 29450 17.443 10.153 1 2254000 79274 6564 53094 54217 92208 92208 -0.10152705286213859 YPFSTSVKL 9 Unmodified _YPFSTSVKL_ 0 0 0 ENSG00000150687|ENST00000280258|PRSS23;nc|ENSG00000150687|O95084-2|PRSS23 ENSG00000150687|ENST00000280258|PRSS23 ENSG00000150687|ENST00000280258|PRSS23 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2833251953125 2 521.2844 1040.55425 1.4623 0.00076228 -2.7959 -0.0014575 -1.3336 -0.00069517 521.2825574333904 63.902 0.53135 57.727 57.579 58.11 -6.1757 38 28 2 0 0 0 0.094149 1 41404 41404 34.402 2.2848 1 17382000 79275 6068 53095 54218 92209 92209 0.0355922472876955 YPFTGDHKQKF 11 Unmodified _YPFTGDHKQKF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 456.5626525878906 3 456.562938 1366.66699 NaN NaN NaN NaN NaN NaN NaN 27.309 1 27.309 26.809 27.809 0 0 0 0 0.93694 1 14065 14065 4.7159 3.9394 1 79276 4331 53096 54219 92210 92210 -0.0016812654521345394 YPFTGDHKQKF 11 Unmodified _YPFTGDHKQKF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 456.5640563964844 3 456.562938 1366.66699 0.35193 0.00016068 0.24963 0.00011397 0.60157 0.00027465 456.56303612548925 27.176 0.19256 27.144 27.069 27.262 -0.031708 15 9 2 0 0 0 0.0010742 1 13989 13989 82.445 70.218 1 16813000 79277 4331 53096 54219 92211 92211 -0.0016812654521345394 YPFTGDHKQKF 11 Unmodified _YPFTGDHKQKF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 456.5633544921875 3 456.562938 1366.66699 NaN NaN NaN NaN NaN NaN NaN 27.027 1 27.055 26.555 27.555 0.028664 0 0 0 0.25567 1 14035 14035 35.996 26.232 1 79278 4331 53096 54219 92212 92212 -0.0016812654521345394 YPFTGDHKQKF 11 Unmodified _YPFTGDHKQKF_ 0 0 0 nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY nc|ENSG00000131473|P53396-2|ACLY nc|ENSG00000131473|P53396-2|ACLY MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.563720703125 3 456.562938 1366.66699 0.97814 0.00044658 0.3942 0.00017998 1.3723 0.00062656 456.5631493695503 30.312 0.41664 26.815 26.592 27.009 -3.497 53 20 3 0 0 0 0.018102 3 17175 17005;17049;17175 59.177 37.936 1 68716000 79279 4331 53096 54219 92213;92214;92215 92215 -0.0016812654521345394 YPFYDCRQAM 10 Carbamidomethyl (C),Oxidation (M) _YPFYDC(Carbamidomethyl (C))RQAM(Oxidation (M))_ YPFYDC(1)RQAM YPFYDCRQAM(1) YPFYDC(46)RQAM YPFYDCRQAM(46) 0 1 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 683.7824096679688 2 683.781373 1365.54819 -0.020864 -1.4267E-05 1.6483 0.0011271 1.6274 0.0011128 683.7829202749107 38.223 0.45027 37.952 37.761 38.211 -0.27133 61 20 4 0 0 0 0.10424 2 20072 20072;20173 45.7 33.459 1 4549500 79280 9843 53097 54220 92216;92217 92216 899 1581 -0.11995984836721618 YPFYDCRQAM 10 Carbamidomethyl (C),Oxidation (M) _YPFYDC(Carbamidomethyl (C))RQAM(Oxidation (M))_ YPFYDC(1)RQAM YPFYDCRQAM(1) YPFYDC(120)RQAM YPFYDCRQAM(120) 0 1 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 683.78173828125 2 683.781373 1365.54819 1.1397 0.00077931 -0.54099 -0.00036992 0.59872 0.00040939 684.2825051406833 42.974 0.39892 38.29 38.072 38.47 -4.6846 60 25 3 0 0 0 0.00019901 2 25955 25955;26095 117.76 70.012 1 17477000 79281 9843 53097 54220 92218;92219 92218 899 1581 -0.11995984836721618 YPFYDCRQAM 10 Carbamidomethyl (C) _YPFYDC(Carbamidomethyl (C))RQAM_ YPFYDC(1)RQAM YPFYDC(120)RQAM 0 1 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.784912109375 2 675.783915 1349.55328 0.84293 0.00056964 -0.21767 -0.0001471 0.62526 0.00042254 675.7841678719768 52.589 0.34342 46.854 46.617 46.96 -5.7345 40 18 3 0 0 0 0.00013919 1 33142 33142 118.07 83.667 1 38009000 79282 9843 53097 54221 92220 92220 899 -0.10751680974112787 YPGAGSSSVF 10 Unmodified _YPGAGSSSVF_ 0 0 0 nc|ENSG00000133321|Q9UL19-2|PLAAT4;ENST00000544107.1_1_11:63304348-63313725:+|nuORF;ENST00000537871.1_1_11:63304294-63313725:+|nuORF;ENSG00000133321|ENST00000255688|PLAAT4 nc|ENSG00000133321|Q9UL19-2|PLAAT4 nc|ENSG00000133321|Q9UL19-2|PLAAT4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 971.447265625 1 971.446888 970.439611 0.17142 0.00016652 -0.35785 -0.00034763 -0.18643 -0.00018111 971.4465831526427 48.822 0.073387 48.45 48.407 48.48 -0.37172 5 3 2 0 0 0 0.39779 1 26230 26230 21.747 5.8995 1 1123300 79283 16199 53098 54222 92221 92221 -0.04679084753183815 YPGAHTTT 8 Unmodified _YPGAHTTT_ 0 0 0 nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;ENST00000471736.5_1_4:158142110-158255356:+|nuORF nc|ENSG00000120251|P42262-4|GRIA2 nc|ENSG00000120251|P42262-4|GRIA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 424.2005310058594 2 424.200867 846.387182 NaN NaN NaN NaN NaN NaN NaN 80.729 1 80.237 79.737 80.737 -0.49247 0 0 0 0.97444 1 44207 44207 2.8892 0 1 79284 3501 53099 54223 92222 92222 -0.04215623096160925 YPGCTKVY 8 Carbamidomethyl (C) _YPGC(Carbamidomethyl (C))TKVY_ YPGC(1)TKVY YPGC(100)TKVY 0 1 0 ENSG00000102554|ENST00000377687|KLF5;nc|ENSG00000102554|Q13887-4|KLF5;nc|ENSG00000102554|Q13887-2|KLF5 ENSG00000102554|ENST00000377687|KLF5 ENSG00000102554|ENST00000377687|KLF5 MSMS AL20221201_MKP_PDAC_01 4 494.2351379394531 2 494.233853 986.453153 NaN NaN NaN NaN NaN NaN NaN 30.821 1 27.324 26.824 27.824 -3.497 0 0 0 0.068755 1 17421 17421 99.799 55.392 1 79285 2053 53100 54224 92223 92223 201 -0.04061550245603485 YPGDGSHTV 9 Unmodified _YPGDGSHTV_ 0 0 0 REV__ENSG00000177599|ENST00000323169|ZNF491 REV__ENSG00000177599|ENST00000323169|ZNF491 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.7109985351562 2 466.709057 931.40356 NaN NaN NaN NaN NaN NaN NaN 42.969 1 42.969 42.469 43.469 0 0 0 0 0.76439 1 23305 23305 7.2892 0 1 + 79286 22994 53101 54225 92224 92224 -0.06488541930048086 YPGDPLRF 8 Unmodified _YPGDPLRF_ 0 0 0 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 ENSG00000170892|ENST00000396388|TSEN34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.7470092773438 2 482.747985 963.481417 NaN NaN NaN NaN NaN NaN NaN 60.458 1 59.968 59.468 60.468 -0.49009 0 0 0 0.75749 1 32924 32924 25.399 8.457 1 79287 8039 53102 54226 92225 92225 -0.001784842740107706 YPGEEEANADF 11 Unmodified _YPGEEEANADF_ 0 0 0 REV__ENSG00000064999|ENST00000360359|ANKS1A REV__ENSG00000064999|ENST00000360359|ANKS1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.2505493164062 2 621.251482 1240.48841 NaN NaN NaN NaN NaN NaN NaN 73.253 1 73.253 72.753 73.753 0 0 0 0 0.93893 1 40779 40779 3.2813 0.70383 1 + 79288 17367 53103 54227 92226 92226 -0.12221260974752113 YPGFHCNPSG 10 Unmodified _YPGFHCNPSG_ 0 0 0 REV__ENSG00000141012|ENST00000268695|GALNS REV__ENSG00000141012|ENST00000268695|GALNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 360.1519775390625 3 360.151881 1077.43381 0.8187 0.00029486 -0.35149 -0.00012659 0.46721 0.00016827 360.15167186066697 54.586 0.29095 54.586 54.398 54.689 0 26 12 3 0 0 0 0.69377 1 30329 30329 1.7423 0.52744 1 1492900 + 79289 20512 53104 54228 92227 92227 -0.10180506536516987 YPGFSNGMNY 10 Unmodified _YPGFSNGMNY_ 0 0 0 REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF REV__ENST00000494860.5_1_11:112064591-112085724:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.23583984375 2 575.237124 1148.45969 0.33531 0.00019288 -4.2095 -0.0024214 -3.8742 -0.0022286 575.2353581794515 61.69 0.29211 61.69 61.529 61.821 0 24 12 3 0 0 0 0.5905 1 34417 34417 11.64 5.2862 1 1119200 + 79290 23941 53105 54229 92228 92228 -0.10859657084870378 YPGGQPTY 8 Unmodified _YPGGQPTY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 882.4008178710938 1 882.399209 881.391933 -0.76234 -0.00067269 1.3691 0.0012081 0.60672 0.00053537 882.399700432584 30.229 0.24273 30.229 30.12 30.363 0 14 11 2 0 0 0 0.55032 1 15711 15711 30.225 7.0764 1 562540 79291 5036 53106 54230 92229 92229 -0.05350738953382006 YPGIQRTAY 9 Unmodified _YPGIQRTAY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.77734375 2 534.777274 1067.53999 -0.33022 -0.0001766 0.1895 0.00010134 -0.14072 -7.5254E-05 534.7774645870575 33.283 0.50622 33.283 32.927 33.434 0 49 25 2 0 0 0 0.05483 1 17437 17437 43.772 22.901 1 4667800 79292 7082 53107 54231 92230 92230 0.008925723004722386 YPGIQRTAY 9 Unmodified _YPGIQRTAY_ 0 0 0 ENSG00000163840|ENST00000296161|DTX3L;nc|ENSG00000163840|Q8TDB6-2|DTX3L ENSG00000163840|ENST00000296161|DTX3L ENSG00000163840|ENST00000296161|DTX3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.7779541015625 2 534.777274 1067.53999 -0.30278 -0.00016192 1.4759 0.00078928 1.1731 0.00062736 534.7779445875245 33.395 0.59654 33.236 32.888 33.484 -0.15918 52 24 3 0 0 0 0.014417 3 17405 17303;17405;17501 69.105 36.799 1 3701700 79293 7082 53107 54231 92231;92232;92233 92232 0.008925723004722386 YPGKPLKV 8 Unmodified _YPGKPLKV_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2791137695312 2 451.278921 900.543289 0.74301 0.00033531 0.89455 0.00040369 1.6376 0.000739 451.2791151930235 49.138 0.20958 49.094 48.946 49.155 -0.04369 14 9 2 0 0 0 0.28079 1 26541 26541 57.471 23.369 1 1297300 79294 3395 53108 54232 92234 92234 0.08903867145136246 YPGKPLKVKY 10 Unmodified _YPGKPLKVKY_ 0 0 0 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 ENSG00000118849|ENST00000237696|RARRES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 398.2415771484375 3 398.241137 1191.70158 0.04314 1.718E-05 -1.2425 -0.00049483 -1.1994 -0.00047765 398.2404973203656 24.861 0.19392 24.885 24.78 24.974 0.024427 14 8 2 0 0 0 0.36277 1 12823 12823 23.801 15.357 1 8117800 79295 3395 53109 54233 92235 92235 0.11339741333563325 YPGPASLTQIY 11 Unmodified _YPGPASLTQIY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3114624023438 2 605.311146 1208.60774 0.020327 1.2304E-05 -0.48988 -0.00029653 -0.46955 -0.00028423 605.3108667197079 70.092 0.64424 69.613 69.29 69.934 -0.47903 106 32 4 0 0 0 0.02135 3 38408 38199;38297;38408 62.573 41.036 1 20144000 79296 9907 53110 54234 92236;92237;92238 92238 0.011779774406249999 YPGPASLTQIY 11 Unmodified _YPGPASLTQIY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3098754882812 2 605.311146 1208.60774 NaN NaN NaN NaN NaN NaN NaN 70.418 1 69.939 69.439 70.439 -0.47903 0 0 0 0.91362 1 38513 38513 12.241 6.0349 1 79297 9907 53110 54234 92239 92239 0.011779774406249999 YPGPASLTQIY 11 Unmodified _YPGPASLTQIY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3055419921875 2 605.311146 1208.60774 0.33048 0.00020005 -2.5264 -0.0015293 -2.196 -0.0013292 605.3086752252415 69.521 0.44247 69.552 69.44 69.883 0.030914 36 23 2 0 0 0 0.29431 2 38176 38176;38286 41.84 25.992 1 8109500 79298 9907 53110 54234 92240;92241 92240 0.011779774406249999 YPGPASLTQIY 11 Unmodified _YPGPASLTQIY_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 605.3129272460938 2 605.311146 1208.60774 0.38563 0.00023343 0.84707 0.00051274 1.2327 0.00074617 605.3116301527538 77.691 0.81798 71.516 71.117 71.935 -6.1757 127 46 4 0 0 0 0.00028183 4 50659 50659;50785;50903;51029 103.75 53.815 1 113790000 79299 9907 53110 54234 92242;92243;92244;92245 92242 0.011779774406249999 YPGPATQL 8 Unmodified _YPGPATQL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.4397583007812 1 846.435595 845.428318 -0.077164 -6.5314E-05 1.2626 0.0010687 1.1855 0.0010034 846.4362401975667 43.371 0.23941 43.371 43.222 43.461 0 19 11 2 0 0 0 0.15594 1 23503 23503 85.272 36.926 1 2179200 79300 2100 53111 54235 92246 92246 -0.0005786205666709066 YPGPATQL 8 Unmodified _YPGPATQL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 423.7213134765625 2 423.721436 845.428318 -0.0098562 -4.1763E-06 -0.026173 -1.109E-05 -0.036029 -1.5266E-05 423.7215973930504 43.362 0.32418 43.362 43.162 43.486 0 34 15 3 0 0 0 0.50586 1 23506 23506 34.187 9.5134 1 7631200 79301 2100 53111 54235 92247 92247 -0.0005786205666709066 YPGPATQL 8 Unmodified _YPGPATQL_ 0 0 0 ENSG00000103067|ENST00000473183|ESRP2;nc|ENSG00000103067|Q9H6T0|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 ENSG00000103067|ENST00000473183|ESRP2 MSMS AL20221201_MKP_PDAC_01 4 423.7223815917969 2 423.721436 845.428318 NaN NaN NaN NaN NaN NaN NaN 50.205 1 44.666 44.166 45.166 -5.5391 0 0 0 0.47265 1 31464 31464 42.968 8.7807 1 79302 2100 53111 54235 92248 92248 -0.0005786205666709066 YPGPPSGPGAY 11 Unmodified _YPGPPSGPGAY_ 0 0 0 ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF ENSG00000131981|ENST00000254301|LGALS3 ENSG00000131981|ENST00000254301|LGALS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 532.2434692382812 2 531.748182 1061.48181 0.53976 0.00028702 -3.849 -0.0020467 -3.3093 -0.0017597 531.7472191937926 59.483 0.51105 59.483 59.262 59.773 0 42 22 3 0 0 0 0.22708 1 33164 33164 30.637 2.1497 1 4158500 79303 4363 53112 54236 92249 92249 -0.04647109344796263 YPGPQQPSY 9 Unmodified _YPGPQQPSY_ 0 0 0 ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP ENSG00000170248|ENST00000307296|PDCD6IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.7398681640625 2 518.740357 1035.46616 -0.33477 -0.00017366 -0.77077 -0.00039983 -1.1055 -0.00057349 518.7403362643522 34.58 0.48365 34.58 34.269 34.753 0 62 24 4 0 0 0 0.026094 1 18226 18226 57.471 15.377 1 9300800 79304 7963 53113 54237 92250 92250 -0.05015395861846628 YPGPQVSY 8 Unmodified _YPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 910.4306640625 1 910.430509 909.423233 0.54173 0.00049321 -0.16876 -0.00015365 0.37297 0.00033956 910.4300942173049 42.974 0.42535 42.974 42.737 43.162 0 49 21 3 0 0 0 0.078546 2 23322 23213;23322 112.59 45.598 1 13261000 79305 9647 53114 54238 92251;92252 92252 -0.03510165919283281 YPGPQVSY 8 Unmodified _YPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 455.7188720703125 2 455.718893 909.423233 0.96861 0.00044141 -0.72605 -0.00033088 0.24255 0.00011054 455.71853343158057 43.005 0.44342 43.005 42.718 43.162 0 50 22 3 0 0 0 0.17881 2 23352 23236;23352 78.445 14.882 1 12634000 79306 9647 53114 54238 92253;92254 92254 -0.03510165919283281 YPGPQVSY 8 Unmodified _YPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 910.431396484375 1 910.430509 909.423233 0.64338 0.00058575 0.57478 0.0005233 1.2182 0.0011091 910.4306363319841 50.057 0.57764 44.518 44.183 44.76 -5.5391 74 36 3 0 0 0 0.078546 6 31234 31103;31177;31234;31330;31376;31516 112.59 38.17 1 30576000 79307 9647 53114 54238 92255;92256;92257;92258;92259;92260 92257 -0.03510165919283281 YPGPQVSY 8 Unmodified _YPGPQVSY_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7194213867188 2 455.718893 909.423233 1.0722 0.00048861 0.45974 0.00020951 1.5319 0.00069812 455.71905559698615 50.086 0.60728 44.547 44.201 44.808 -5.5391 95 38 3 0 0 0 0.13235 2 31436 31297;31436 90.836 16.439 1 57685000 79308 9647 53114 54238 92261;92262 92262 -0.03510165919283281 YPGPSHGALHL 11 Unmodified _YPGPSHGALHL_ 0 0 0 ENST00000528758.1_1_11:7507087-7531416:+|nuORF ENST00000528758.1_1_11:7507087-7531416:+|nuORF ENST00000528758.1_1_11:7507087-7531416:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 383.5338745117188 3 383.533091 1147.57744 NaN NaN NaN NaN NaN NaN NaN 26.131 1 23.18 22.68 23.68 -2.9511 0 0 0 0.91154 1 14365 14365 5.4027 1.8157 1 79309 14863 53115 54239 92263 92263 0.00955663566082876 YPGQPHPAL 9 Unmodified _YPGQPHPAL_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.2534484863281 2 490.253434 978.492316 -0.34781 -0.00017051 0.6145 0.00030126 0.26669 0.00013075 490.25363779115946 33.296 0.32495 33.296 33.109 33.434 0 53 16 5 0 0 0 0.087258 1 17461 17461 36.044 19.102 1 55019000 79310 3028 53116 54240 92264 92264 0.002209181002854166 YPGQPHPAL 9 Unmodified _YPGQPHPAL_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 490.2540588378906 2 490.253434 978.492316 -0.088574 -4.3424E-05 0.85445 0.0004189 0.76587 0.00037547 490.25381913461746 33.451 0.45241 33.292 33.078 33.531 -0.15918 50 18 4 0 0 0 0.03327 1 17474 17474 53.576 30.427 1 10726000 79311 3028 53116 54240 92265 92265 0.002209181002854166 YPGQPHPAL 9 Unmodified _YPGQPHPAL_ 0 0 0 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 ENSG00000114315|ENST00000232424|HES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 490.253662109375 2 490.253434 978.492316 1.1703 0.00057375 -0.33467 -0.00016407 0.83565 0.00040968 490.25324348787217 37.644 0.51385 33.275 33.034 33.548 -4.3689 91 30 4 0 0 0 0.0081063 2 22120 21999;22120 93.883 55.732 1 145670000 79312 3028 53116 54240 92266;92267 92267 0.002209181002854166 YPGQPPVTY 9 Unmodified _YPGQPPVTY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.2533874511719 2 511.2531 1020.49165 -0.1434 -7.3314E-05 0.23535 0.00012033 0.091954 4.7012E-05 511.25308836766345 44.668 0.39207 44.668 44.455 44.847 0 51 20 3 0 0 0 0.0031966 2 24231 24231;24337 125.62 73.356 1 118880000 79313 3631 53117 54241 92268;92269 92268 -0.017779213394419457 YPGQPPVTY 9 Unmodified _YPGQPPVTY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1021.5595703125 1 1021.49892 1020.49165 -0.70178 -0.00071687 -0.11757 -0.00012009 -0.81934 -0.00083696 1021.4991342599733 44.694 0.2364 44.694 44.552 44.788 0 21 12 2 0 0 0 0.00012323 1 24266 24266 152.41 97.639 1 10001000 79314 3631 53117 54241 92270 92270 -0.017779213394419457 YPGQPPVTY 9 Unmodified _YPGQPPVTY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.7527770996094 2 511.2531 1020.49165 -0.28781 -0.00014715 -0.4161 -0.00021273 -0.70392 -0.00035988 511.2527993655891 45.029 0.21949 44.705 44.546 44.765 -0.32425 21 11 2 0 0 0 0.0083938 1 23982 23982 108 73.895 1 34925000 79315 3631 53117 54241 92271 92271 -0.017779213394419457 YPGQPPVTY 9 Unmodified _YPGQPPVTY_ 0 0 0 nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 nc|ENSG00000122359|P50995-2|ANXA11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 511.2539672851562 2 511.2531 1020.49165 0.37447 0.00019145 0.38277 0.00019569 0.75725 0.00038714 511.2532791900851 51.727 0.49005 46.009 45.72 46.21 -5.7177 77 31 3 0 0 0 0.0088975 2 32452 32452;32578 104.8 70.697 1 329060000 79316 3631 53117 54241 92272;92273 92272 -0.017779213394419457 YPGQYRVWY 9 Unmodified _YPGQYRVWY_ 0 0 0 REV__ENSG00000179002|ENST00000375371|TAS1R2 REV__ENSG00000179002|ENST00000375371|TAS1R2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.29931640625 2 616.298373 1230.58219 NaN NaN NaN NaN NaN NaN NaN 70.084 1 69.605 69.105 70.105 -0.47903 0 0 0 0.46757 1 38322 38322 16.942 2.104 1 + 79317 23079 53118 54242 92274 92274 -0.023874522911455642 YPGRSLVF 8 Unmodified _YPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 469.7586975097656 2 469.758352 937.502152 -0.010507 -4.936E-06 1.0721 0.00050364 1.0616 0.0004987 469.7588384681934 51.744 0.54834 51.685 51.435 51.983 -0.058918 73 26 4 0 0 0 0.27285 3 28040 27939;28040;28146 58.679 30.192 1 10011000 79318 1536 53119 54243 92275;92276;92277 92276 0.0309010610567384 YPGRSLVF 8 Unmodified _YPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.7598266601562 2 469.758352 937.502152 0.82344 0.00038682 -0.28013 -0.00013159 0.54331 0.00025522 469.75830184459056 57.094 0.43087 51.117 50.992 51.423 -5.9769 43 24 2 0 0 0 0.56356 1 36621 36621 29.082 8.2104 1 39022000 79319 1536 53119 54243 92278 92278 0.0309010610567384 YPGRSLVF 8 Unmodified _YPGRSLVF_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 469.758352 937.502152 0.5104 0.00023976 -0.5096 -0.00023939 0.0007937 3.7285E-07 469.75808009835185 52.082 0.37889 51.648 51.512 51.891 -0.43367 -0.018416 -0.0013452 NaN 58.679 41 18 3 NaN NaN NaN NaN 0 NaN NaN 0 2987100 79320 1536 53119 54243 0.0309010610567384 YPGSHGITAM 10 Oxidation (M) _YPGSHGITAM(Oxidation (M))_ YPGSHGITAM(1) YPGSHGITAM(120) 0 0 1 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-6|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.240478515625 2 525.239667 1048.46478 0.051877 2.7248E-05 0.097525 5.1224E-05 0.1494 7.8472E-05 525.2400647320329 23.781 0.36677 23.781 23.588 23.955 0 47 18 4 0 0 0 0.00060102 1 12166 12166 115.69 81.29 1 4458200 79321 7871 53120 54244 92279 92279 1335 -0.05751353222262878 YPGSHGITAM 10 Oxidation (M) _YPGSHGITAM(Oxidation (M))_ YPGSHGITAM(1) YPGSHGITAM(110) 0 0 1 nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-2|PTK2;nc|ENSG00000169398|Q05397-6|PTK2 nc|ENSG00000169398|Q05397|PTK2 nc|ENSG00000169398|Q05397|PTK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2400512695312 2 525.239667 1048.46478 0.53759 0.00028236 -0.42863 -0.00022514 0.10895 5.7227E-05 525.2394144371837 27.27 0.35502 24.234 24.04 24.395 -3.0365 33 17 2 0 0 0 0.0022539 2 15055 15055;15182 107.19 74.882 1 24731000 79322 7871 53120 54244 92280;92281 92280 1335 -0.05751353222262878 YPGTWNRAY 9 Unmodified _YPGTWNRAY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2679443359375 2 564.267073 1126.51959 0.18723 0.00010565 1.9505 0.0011006 2.1377 0.0012063 564.2679561760044 38.323 0.22615 38.036 37.908 38.134 -0.28687 15 9 2 0 0 0 0.08691 1 20164 20164 36.127 16.87 1 1270200 79323 4539 53121 54245 92282 92282 -0.03860598359347023 YPGVAHCP 8 Unmodified _YPGVAHCP_ 0 0 0 REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1 REV__nc|ENSG00000170448|Q6ZNB6-2|NFXL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 422.1923828125 2 422.194531 842.374509 NaN NaN NaN NaN NaN NaN NaN 15.914 1 15.9 15.4 16.4 -0.014067 0 0 0 0.97444 1 7831 7831 0.79363 0 1 + 79324 22482 53122 54246 92283 92283 -0.05298357760034378 YPGYPQPGY 9 Unmodified _YPGYPQPGY_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 521.2376098632812 2 521.23745 1040.46035 1.2495 0.00065127 -0.69876 -0.00036422 0.55072 0.00028705 521.2367769805862 50.167 0.32362 44.628 44.531 44.854 -5.5391 30 20 2 0 0 0 0.068777 1 31535 31535 40.449 10.224 1 10005000 79325 4760 53123 54247 92284 92284 -0.058264943735366614 YPHAFNVKF 9 Unmodified _YPHAFNVKF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.8629150390625 3 374.862548 1121.56581 1.0457 0.00039198 0.1013 3.7972E-05 1.147 0.00042995 374.86256127226545 49.82 0.45526 49.771 49.531 49.986 -0.048824 80 22 5 0 0 0 0.031062 2 26890 26890;26993 41.956 33.21 1 49087000 79326 8214 53124 54248 92285;92286 92285 0.009894665427509608 YPHAFNVKF 9 Unmodified _YPHAFNVKF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 561.789794921875 2 561.790184 1121.56581 1.5505 0.00087108 0.90455 0.00050816 2.4551 0.0013792 561.7878134493096 49.83 0.57562 49.782 49.531 50.107 -0.048828 67 28 3 0 0 0 0.0090851 1 26913 26913 85.357 55.132 1 4647600 79327 8214 53124 54248 92287 92287 0.009894665427509608 YPHAFNVKF 9 Unmodified _YPHAFNVKF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8632507324219 3 374.862548 1121.56581 1.3355 0.00050063 -0.51937 -0.00019469 0.81614 0.00030594 374.86256984939274 54.739 0.45164 48.874 48.668 49.119 -5.8653 71 27 3 0 0 0 0.07916 2 34799 34665;34799 36.506 28.561 1 68653000 79328 8214 53124 54248 92288;92289 92289 0.009894665427509608 YPHAFNVKF 9 Unmodified _YPHAFNVKF_ 0 0 0 ENSG00000172409|ENST00000533682|CLP1;nc|ENSG00000172409|Q92989-2|CLP1 ENSG00000172409|ENST00000533682|CLP1 ENSG00000172409|ENST00000533682|CLP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7904663085938 2 561.790184 1121.56581 1.0441 0.00058655 -1.7669 -0.00099264 -0.72285 -0.00040609 562.2899811418758 54.783 0.40382 48.918 48.746 49.15 -5.8653 43 24 2 0 0 0 0.0088975 1 34757 34757 104.8 60.392 1 21430000 79329 8214 53124 54248 92290 92290 0.009894665427509608 YPHAMGVRPY 10 Unmodified _YPHAMGVRPY_ 0 0 0 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 595.7929077148438 2 595.792401 1189.57025 -0.43059 -0.00025654 1.0532 0.00062746 0.62256 0.00037092 595.7926922560846 36.284 0.24594 36.035 35.886 36.132 -0.2497 22 10 3 0 0 0 0.50944 1 19029 19029 15.847 0 1 3175700 + 79330 21937 53125 54249 92291 92291 -0.016953923059645604 YPHAMGVRPY 10 Unmodified _YPHAMGVRPY_ 0 0 0 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 595.792401 1189.57025 -0.43059 -0.00025654 1.0532 0.00062746 0.62256 0.00037092 595.7926922560846 36.284 0.24594 36.035 35.886 36.132 -0.2497 -0.017539 0.0010679 NaN 15.847 22 10 3 NaN NaN NaN NaN 0 NaN NaN 0 3175700 + 79331 21937 53125 54249 -0.016953923059645604 YPHAMGVRPY 10 Unmodified _YPHAMGVRPY_ 0 0 0 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 REV__nc|ENSG00000164651|Q8IXZ3-2|SP8 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 595.792401 1189.57025 0.37121 0.00022116 -0.67664 -0.00040314 -0.30543 -0.00018198 595.7919032460802 40.599 0.19178 36.07 35.971 36.163 -4.5294 0.017539 -0.00099333 NaN 15.847 14 11 2 NaN NaN NaN NaN 0 NaN NaN 0 6006300 + 79332 21937 53125 54249 -0.016953923059645604 YPHDGKIFF 9 Unmodified _YPHDGKIFF_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.1908874511719 3 375.190553 1122.54983 0.61772 0.00023176 -0.03305 -1.24E-05 0.58467 0.00021936 375.19055255865885 49.388 0.5243 48.996 48.694 49.218 -0.3923 65 25 3 0 0 0 0.47359 1 26470 26470 8.9762 3.2444 1 8819500 79333 2747 53126 54250 92292 92292 -0.0065423969413132 YPHDGKIFF 9 Unmodified _YPHDGKIFF_ 0 0 0 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 ENSG00000110851|ENST00000228437|PRDM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.2823486328125 2 562.282192 1122.54983 0.79296 0.00044587 -1.44 -0.00080971 -0.64708 -0.00036384 562.2823460603428 49.386 0.36146 48.994 48.757 49.119 -0.3923 38 17 3 0 0 0 0.34134 1 26528 26528 15.847 5.0233 1 2247000 79334 2747 53126 54250 92293 92293 -0.0065423969413132 YPHDRPTLY 9 Unmodified _YPHDRPTLY_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8614196777344 3 387.861096 1160.56146 -0.40853 -0.00015845 0.089517 3.472E-05 -0.31901 -0.00012373 387.8610929602166 29.484 0.25885 29.484 29.285 29.544 0 27 12 3 0 0 0 0.32871 1 15250 15250 20.415 8.1739 1 9350400 79335 2483 53127 54251 92294 92294 -0.012400426707927181 YPHDRPTLY 9 Unmodified _YPHDRPTLY_ 0 0 0 nc|ENSG00000107242|O14986-3|PIP5K1B;ENSG00000107242|ENST00000265382|PIP5K1B;nc|ENSG00000107242|O14986-2|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B nc|ENSG00000107242|O14986-3|PIP5K1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2883911132812 2 581.288005 1160.56146 -0.2291 -0.00013317 -0.22354 -0.00012994 -0.45264 -0.00026311 581.2877077367876 29.466 0.098906 29.466 29.391 29.489 0 8 4 2 0 0 0 0.30202 1 15265 15265 17.113 4.5813 1 1818800 79336 2483 53127 54251 92295 92295 -0.012400426707927181 YPHDVVNHL 9 Unmodified _YPHDVVNHL_ 0 0 0 nc|ENSG00000165698|Q96E40-2|SPACA9;ENSG00000165698|ENST00000356311|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1856994628906 3 365.185691 1092.53524 -1.2535 -0.00045776 0.1163 4.2472E-05 -1.1372 -0.00041529 365.18571374778537 32.498 0.79502 32.498 31.9 32.695 0 100 43 4 0 0 0 0.053952 2 16784 16683;16784 43.982 30.367 1 44945000 79337 7377 53128 54252 92296;92297 92297 -0.007323118422846164 YPHDVVNHL 9 Unmodified _YPHDVVNHL_ 0 0 0 nc|ENSG00000165698|Q96E40-2|SPACA9;ENSG00000165698|ENST00000356311|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1861877441406 3 365.185691 1092.53524 -0.040096 -1.4643E-05 1.0525 0.00038435 1.0124 0.00036971 365.18592957942917 32.032 0.38012 31.903 31.769 32.149 -0.12915 20 14 2 0 0 0 0.42049 1 16720 16720 11.495 6.5977 1 995110 79338 7377 53128 54252 92298 92298 -0.007323118422846164 YPHDVVNHL 9 Unmodified _YPHDVVNHL_ 0 0 0 nc|ENSG00000165698|Q96E40-2|SPACA9;ENSG00000165698|ENST00000356311|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.1862487792969 3 365.185691 1092.53524 1.6484 0.00060198 0.42318 0.00015454 2.0716 0.00075652 365.18569646110757 36.07 0.35976 31.877 31.741 32.1 -4.1928 61 21 4 0 0 0 0.060956 2 20978 20978;21122 42.312 32.769 1 16001000 79339 7377 53128 54252 92299;92300 92299 -0.007323118422846164 YPHDVVNHL 9 Unmodified _YPHDVVNHL_ 0 0 0 nc|ENSG00000165698|Q96E40-2|SPACA9;ENSG00000165698|ENST00000356311|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 nc|ENSG00000165698|Q96E40-2|SPACA9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.27197265625 2 547.274898 1092.53524 0.89672 0.00049075 -2.774 -0.0015181 -1.8773 -0.0010274 547.273145613093 36.134 0.29604 31.942 31.77 32.067 -4.1928 32 17 2 0 0 0 0.024189 1 21030 21030 65.235 45.978 1 7362000 79340 7377 53128 54252 92301 92301 -0.007323118422846164 YPHEPTAVF 9 Unmodified _YPHEPTAVF_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.7582397460938 2 530.758549 1059.50255 0.96163 0.00051039 -1.7821 -0.00094587 -0.82048 -0.00043547 530.7575291187308 46.299 0.33636 46.299 46.164 46.501 0 37 15 3 0 0 0 0.087258 1 25294 25294 36.044 8.4154 1 7554800 79341 6629 53129 54253 92302 92302 -0.024825189651664914 YPHEPTAVF 9 Unmodified _YPHEPTAVF_ 0 0 0 ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON ENSG00000159147|ENST00000303071|DONSON MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 530.758549 1059.50255 0.51658 0.00027418 0.36905 0.00019588 0.88563 0.00047006 530.7586571160292 46.617 0.1963 46.28 46.131 46.327 -0.33664 -0.0090471 0.0018191 NaN 36.044 11 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2944900 79342 6629 53129 54253 -0.024825189651664914 YPHGIHQF 8 Unmodified _YPHGIHQF_ 0 0 0 REV__nc|ENSG00000160199|P55347-2|PKNOX1 REV__nc|ENSG00000160199|P55347-2|PKNOX1 MSMS AL20221201_MKP_PDAC_01 4 499.7519226074219 2 499.745776 997.477 NaN NaN NaN NaN NaN NaN NaN 39.703 1 35.252 34.752 35.752 -4.4509 0 0 0 0.59893 1 23601 23601 34.187 7.8461 1 + 79343 21520 53130 54254 92303 92303 -0.021839486969156496 YPHGINTAIY 10 Unmodified _YPHGINTAIY_ 0 0 0 nc|ENSG00000151779|A2RRP1-2|NBAS;ENSG00000151779|ENST00000281513|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS nc|ENSG00000151779|A2RRP1-2|NBAS MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.7913818359375 2 574.790381 1147.56621 1.1201 0.00064384 -1.2916 -0.0007424 -0.17148 -9.8564E-05 574.789579012715 50.728 0.4274 45.079 44.889 45.316 -5.649 43 25 2 0 0 0 0.0044003 1 31806 31806 100.37 44.194 1 44770000 79344 6146 53131 54255 92304 92304 -0.001671585280519139 YPHGSTDKLPY 11 Unmodified _YPHGSTDKLPY_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 426.543701171875 3 426.543544 1276.6088 0.053919 2.2999E-05 0.35274 0.00015046 0.40666 0.00017346 426.5435004857457 31.225 0.26879 31.225 31.091 31.359 0 35 12 3 0 0 0 0.65538 1 16219 16219 8.4443 2.2525 1 3935300 79345 4883 53132 54256 92305 92305 -0.018438081904605497 YPHGSTDKLPY 11 Unmodified _YPHGSTDKLPY_ 0 0 0 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 ENSG00000136930|ENST00000259457|PSMB7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 426.5445251464844 3 426.543544 1276.6088 1.1651 0.00049695 0.034249 1.4609E-05 1.1993 0.00051156 426.5435302636876 34.916 0.35977 30.821 30.632 30.991 -4.0951 52 20 3 0 0 0 0.42951 2 20130 20130;20272 19.987 10.443 1 10740000 79346 4883 53132 54256 92306;92307 92306 -0.018438081904605497 YPHHATQL 8 Unmodified _YPHHATQL_ 0 0 0 nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF nc|ENSG00000168488|Q8WWM7-3|ATXN2L nc|ENSG00000168488|Q8WWM7-3|ATXN2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.74365234375 2 483.743234 965.471915 1.123 0.00054322 -0.054258 -2.6247E-05 1.0687 0.00051698 483.743296677074 19.657 0.19448 17.001 16.91 17.105 -2.6564 19 12 2 0 0 0 0.30525 1 10426 10426 54.774 30.1 1 2876200 79347 7770 53133 54257 92308 92308 -0.012202525595284897 YPHIFSTNF 9 Unmodified _YPHIFSTNF_ 0 0 0 ENSG00000157106|ENST00000446231|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENST00000523028.5_1_16:21912870-21927266:-|nuORF;ENST00000517529.1_1_16:21916176-21922684:-|nuORF;ENST00000337787.3_1_16:22473448-22477202:+|nuORF;ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENSG00000157106|ENST00000446231|SMG1;ENST00000522841.6_1_16:21481075-21531198:-|nuORF ENSG00000157106|ENST00000446231|SMG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 563.272705078125 2 563.271824 1124.5291 NaN NaN NaN NaN NaN NaN NaN 65.174 1 65.174 64.674 65.674 7.6294E-06 0 0 0 0.017457 1 35716 35716 81.864 34.943 1 79348 6500;14760 53134 54258 92309 92309 -0.028188300738065664 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2745971679688 2 547.274898 1092.53524 -1.0565 -0.00057821 -0.24727 -0.00013533 -1.3038 -0.00071354 547.2748870155502 32.503 0.49156 32.503 32.204 32.695 0 75 28 4 0 0 0 0.012668 2 16987 16882;16987 71.134 49.387 1 33412000 79349 3847 53135 54259 92310;92311 92311 -0.007323118423073538 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1854248046875 3 365.185691 1092.53524 -1.2535 -0.00045776 0.1163 4.2472E-05 -1.1372 -0.00041529 365.18571374778537 32.498 0.79502 32.498 31.9 32.695 0 100 43 4 0 0 0 0.14 2 17010 16898;17010 29.082 18.258 1 44945000 79350 3847 53135 54259 92312;92313 92313 -0.007323118423073538 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.1856079101562 3 365.185691 1092.53524 -0.20589 -7.5187E-05 0.044446 1.6231E-05 -0.16144 -5.8956E-05 365.1856589929947 32.563 0.47715 32.434 32.149 32.626 -0.12915 34 20 2 0 0 0 0.42049 1 16903 16903 11.495 1.9507 1 2694900 79351 3847 53135 54259 92314 92314 -0.007323118423073538 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.274658203125 2 547.274898 1092.53524 -0.31186 -0.00017067 0.30452 0.00016665 -0.00734 -4.017E-06 547.2750355498972 32.534 0.45299 32.405 32.199 32.652 -0.12915 33 19 2 0 0 0 0.029718 2 16923 16923;17025 52.268 33.011 1 3831600 79352 3847 53135 54259 92315;92316 92315 -0.007323118423073538 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2749633789062 2 547.274898 1092.53524 0.5856 0.00032048 -0.032415 -1.774E-05 0.55318 0.00030274 547.27481462301 36.592 0.63988 32.308 32.01 32.65 -4.2835 102 39 3 0 0 0 0.0074582 3 21238 21238;21391;21511 123.45 79.592 1 67570000 79353 3847 53135 54259 92317;92318;92319 92317 -0.007323118423073538 YPHLHNAEL 9 Unmodified _YPHLHNAEL_ 0 0 0 ENSG00000125398|ENST00000245479|SOX9;nc|ENSG00000100146|P56693-2|SOX10;ENSG00000005513|ENST00000293894|SOX8;nc|ENSG00000100146|P56693|SOX10;ENST00000566034.1_1_16:1032135-1032345:+|nuORF ENSG00000125398|ENST00000245479|SOX9 ENSG00000125398|ENST00000245479|SOX9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.185791015625 3 365.185691 1092.53524 1.3172 0.00048101 -0.28685 -0.00010476 1.0303 0.00037626 365.1855335823857 36.627 0.71944 32.343 31.962 32.682 -4.2835 111 44 4 0 0 0 0.14 3 21381 21258;21381;21500 29.082 16.209 1 123660000 79354 3847 53135 54259 92320;92321;92322 92321 -0.007323118423073538 YPHNGMIDL 9 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ YPHNGM(1)IDL YPHNGM(48)IDL 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2481079101562 2 538.247492 1074.48043 0.21289 0.00011459 -0.022135 -1.1914E-05 0.19076 0.00010267 538.2476645360736 39.961 0.41394 39.961 39.616 40.03 0 71 20 5 0 0 0 0.042911 1 21405 21405 48.346 29.089 1 41271000 79355 1007 53136 54260 92323 92323 169 -0.053830667052125136 YPHNGMIDL 9 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ YPHNGM(1)IDL YPHNGM(48)IDL 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.247314453125 2 538.247492 1074.48043 0.13907 7.4855E-05 -0.59402 -0.00031973 -0.45494 -0.00024487 538.2473967763223 40.161 0.28424 40.161 40.03 40.314 0 42 13 4 0 0 0 0.042911 2 21621 21514;21621 48.346 31.404 1 32264000 79356 1007 53136 54260 92324;92325 92325 169 -0.053830667052125136 YPHNGMIDL 9 Oxidation (M) _YPHNGM(Oxidation (M))IDL_ YPHNGM(1)IDL YPHNGM(48)IDL 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2470703125 2 538.247492 1074.48043 0.43461 0.00023393 0.23284 0.00012533 0.66745 0.00035925 538.2474035692369 40.459 0.2326 40.162 40.028 40.26 -0.29716 24 10 3 0 0 0 0.042911 1 21374 21374 48.346 28.984 1 3184000 79357 1007 53136 54260 92326 92326 169 -0.053830667052125136 YPHNGMIDL 9 Unmodified _YPHNGMIDL_ 0 0 0 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.2730712890625 2 530.250034 1058.48552 0.56397 0.00029904 0.46456 0.00024634 1.0285 0.00054538 530.2502966292283 56.867 0.43693 50.89 50.649 51.086 -5.9769 63 25 3 0 0 0 0.15672 1 36204 36204 26.884 15.243 1 68956000 79358 1007 53136 54261 92327 92327 -0.04138762842580945 YPHNGMIDLKY 11 Oxidation (M) _YPHNGM(Oxidation (M))IDLKY_ YPHNGM(1)IDLKY YPHNGM(49)IDLKY 0 0 1 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 ENSG00000069849|ENST00000286371|ATP1B3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 456.2203979492188 3 456.220184 1365.63872 0.93542 0.00042676 0.13964 6.3707E-05 1.0751 0.00049047 456.220371244776 42.928 0.47517 38.243 37.982 38.457 -4.6846 50 30 2 0 0 0 0.058008 1 25894 25894 49.159 39.395 1 13596000 79359 1007 53137 54262 92328 92328 169 -0.02947192516785435 YPHPAYPMPF 10 Unmodified _YPHPAYPMPF_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B;ENST00000486774.1_1_17:25972868-25974145:+|nuORF;ENST00000577691.5_1_17:18387201-18397610:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 610.3163452148438 2 610.283877 1218.5532 0.69481 0.00042403 1.8077 0.0011032 2.5025 0.0015272 610.2852068785628 75.981 0.53904 69.806 69.465 70.004 -6.1757 39 28 2 0 0 0 0.10324 1 49589 49589 40.449 29.625 1 6630900 79360 7822 53138 54263 92329 92329 -0.04733312911798748 YPHPHFALL 9 Unmodified _YPHPHFALL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 365.8648071289062 3 365.53091 1093.5709 0.68758 0.00025133 -0.9058 -0.0003311 -0.21823 -7.9768E-05 365.8651227147126 58.145 0.41419 58.084 57.82 58.235 -0.060719 30 20 3 0 0 0 0.1492 1 31674 31674 25.399 17.244 1 2301600 79361 4333 53139 54264 92330 92330 0.027857704053758425 YPHPHFALL 9 Unmodified _YPHPHFALL_ 0 0 0 ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 ENSG00000131503|ENST00000360839|ANKHD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.5314636230469 3 365.53091 1093.5709 1.6147 0.00059021 0.34154 0.00012484 1.9562 0.00071505 365.53100850159336 91.565 0.43669 85.389 85.094 85.53 -6.1757 47 23 3 0 0 0 0.22317 1 60549 60549 13.906 6.2971 1 15648000 79362 4333 53139 54264 92331 92331 0.027857704053758425 YPHQLDQKV 9 Unmodified _YPHQLDQKV_ 0 0 0 ENST00000472011.5_1_1:235582749-235612074:+|nuORF;nc|ENSG00000285053|Q15813|TBCE;nc|ENSG00000285053|Q15813-2|TBCE;ENST00000465463.1_1_1:235605175-235611824:+|nuORF ENST00000472011.5_1_1:235582749-235612074:+|nuORF ENST00000472011.5_1_1:235582749-235612074:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 376.5339965820312 3 376.532979 1126.57711 NaN NaN NaN NaN NaN NaN NaN 16.144 1 13.588 13.088 14.088 -2.557 0 0 0 0.82396 1 8343 8343 2.7352 0 1 79363 13892 53140 54265 92332 92332 0.01888243846201476 YPHQVPLVL 9 Unmodified _YPHQVPLVL_ 0 0 0 ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;nc|ENSG00000068878|Q14997-4|PSME4 ENSG00000068878|ENST00000404125|PSME4 ENSG00000068878|ENST00000404125|PSME4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.3078002929688 2 533.30821 1064.60187 0.36149 0.00019278 -0.026403 -1.4081E-05 0.33508 0.0001787 533.3079705773304 63.082 0.41801 62.596 62.423 62.841 -0.48617 44 19 3 0 0 0 0.038285 1 34364 34364 50.855 29.108 1 9471500 79364 989 53141 54266 92333 92333 0.07214923719607214 YPHRLNLFY 9 Unmodified _YPHRLNLFY_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.2169494628906 3 408.217102 1221.62948 0.037672 1.5378E-05 0.45234 0.00018465 0.49001 0.00020003 408.55157798919487 53.067 0.27018 53.004 52.845 53.115 -0.063423 32 13 3 0 0 0 0.2001 1 28738 28738 21.537 14.435 1 4927800 79365 6956 53142 54267 92334 92334 0.027528269798267502 YPHRLNLFY 9 Unmodified _YPHRLNLFY_ 0 0 0 ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;RPRD2|p.S785Lfs*29|1|0.52|ENSG00000163125|chr1:150471300-150471300|T/-|frameshift_variant;nc|ENSG00000163125|Q5VT52-5|RPRD2 ENST00000492220.1_1_1:150381497-150445807:+|nuORF ENST00000492220.1_1_1:150381497-150445807:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3244018554688 2 611.822015 1221.62948 0.52303 0.00032 0.24976 0.00015281 0.7728 0.00047281 611.8220207322478 53.05 0.21642 52.987 52.845 53.061 -0.063423 24 10 3 0 0 0 0.070838 1 28751 28751 39.957 23.015 1 2950500 79366 6956 53142 54267 92335 92335 0.027528269798267502 YPHSAFTL 8 Unmodified _YPHSAFTL_ 0 0 0 nc|ENSG00000138386|Q13506-2|NAB1;ENSG00000138386|ENST00000337386|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 nc|ENSG00000138386|Q13506-2|NAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2348937988281 2 468.23471 934.454868 -0.08174 -3.8274E-05 0.11793 5.5218E-05 0.036187 1.6944E-05 468.23471850200553 51.287 0.21121 50.873 50.718 50.93 -0.41351 17 10 2 0 0 0 0.41521 1 27642 27642 42.968 10.851 1 2429200 79367 5047 53143 54268 92336 92336 -0.014981731653392671 YPHSTPPTTPF 11 Unmodified _YPHSTPPTTPF_ 0 0 0 REV__ENST00000552420.5_1_12:57870791-57873587:-|nuORF REV__ENST00000552420.5_1_12:57870791-57873587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.80908203125 2 622.800946 1243.58734 0.34622 0.00021563 0.25472 0.00015864 0.60093 0.00037426 622.8014084629111 53.856 0.95848 53.39 52.863 53.822 -0.46664 114 47 4 0 0 0 0.54936 1 29359 29359 13.906 5.7505 1 8192300 + 79368 28727 53144 54269 92337 92337 -0.02471193219230372 YPIAIFIKP 9 Unmodified _YPIAIFIKP_ 0 0 0 nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3;nc|ENSG00000150672|Q15700-5|DLG2;nc|ENSG00000150672|Q15700-3|DLG2;nc|ENSG00000150672|Q15700|DLG2;ENST00000496931.1_1_X:69719878-69720431:+|nuORF;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3;ENSG00000150672|ENST00000376104|DLG2;nc|ENSG00000150672|Q15700-4|DLG2 nc|ENSG00000082458|Q92796-3|DLG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.8247680664062 2 531.323328 1060.6321 0.13373 7.1053E-05 -0.33808 -0.00017963 -0.20436 -0.00010858 531.3231033919343 76.955 0.42349 77.005 76.75 77.173 0.050102 41 17 3 0 0 0 0.038285 1 42416 42416 50.855 32.72 1 6624200 79369 1346;6067;16268 53145 54270 92338 92338 0.10421282384777442 YPIAVLIDEL 10 Unmodified _YPIAVLIDEL_ 0 0 0 ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-4|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF ENSG00000105568|ENST00000322088|PPP2R1A ENSG00000105568|ENST00000322088|PPP2R1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.3265380859375 2 573.326265 1144.63798 1.1255 0.00064526 -1.4532 -0.00083316 -0.32773 -0.00018789 573.3256086013093 101.26 0.078369 95.081 95.046 95.125 -6.1757 8 4 2 0 0 0 0.045724 1 67936 67936 60.39 37.241 1 16211000 79370 2336 53146 54271 92339 92339 0.0714433610580727 YPIDLAGLLQY 11 Unmodified _YPIDLAGLLQY_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 633.3436279296875 2 633.342446 1264.67034 2.0383 0.0012909 -1.5061 -0.00095388 0.53214 0.00033703 633.3414073987481 100.12 0.22221 100.09 99.989 100.21 -0.036301 20 7 4 0 0 0 0.02135 1 55621 55621 81.89 55.622 1 23590000 79371 3869 53147 54272 92340 92340 0.048591235088224494 YPIDLAGLLQY 11 Unmodified _YPIDLAGLLQY_ 0 0 0 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 ENSG00000125676|ENST00000245838|THOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 633.34326171875 2 633.342446 1264.67034 1.3232 0.00083805 0.030717 1.9454E-05 1.3539 0.0008575 633.3423596461577 100.98 0.13567 94.807 94.734 94.869 -6.1757 25 7 4 0 0 0 0.096911 1 67653 67653 62.573 36.305 1 191790000 79372 3869 53147 54272 92341 92341 0.048591235088224494 YPIDPVTQEF 10 Unmodified _YPIDPVTQEF_ 0 0 0 nc|ENSG00000119969|Q9NRZ9-5|HELLS;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000119969|Q9NRZ9-6|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS nc|ENSG00000119969|Q9NRZ9-5|HELLS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.7957763671875 2 604.795329 1207.5761 -0.0012175 -7.3631E-07 0.62406 0.00037743 0.62284 0.00037669 604.7956993755644 68.385 0.42482 68.385 68.184 68.609 0 58 19 4 0 0 0 0.04925 2 38120 38120;38215 58.679 38.225 1 5650100 79373 3486 53148 54273 92342;92343 92342 -0.01938015313339747 YPIEHGIIT 9 Unmodified _YPIEHGIIT_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.78173828125 2 521.782025 1041.5495 0.05397 2.816E-05 -0.4318 -0.00022531 -0.37783 -0.00019714 521.7817770680506 40.631 0.32277 40.631 40.451 40.774 0 56 17 4 0 0 0 0.1773 1 21915 21915 25.399 4.9457 1 44874000 79374 5538 53149 54274 92344 92344 0.030383405859993218 YPIEHGIIT 9 Unmodified _YPIEHGIIT_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.7820434570312 2 521.782025 1041.5495 0.21187 0.00011055 0.39672 0.000207 0.60859 0.00031755 521.7821494838665 40.997 0.3203 40.694 40.543 40.863 -0.30304 39 15 3 0 0 0 0.10734 1 21671 21671 32.305 0.18852 1 19721000 79375 5538 53149 54274 92345 92345 0.030383405859993218 YPIEHGIITN 10 Unmodified _YPIEHGIITN_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.8047485351562 2 578.803488 1155.59242 -0.027951 -1.6178E-05 -0.83264 -0.00048194 -0.86059 -0.00049811 578.802273694003 37.659 0.41782 37.388 37.067 37.485 -0.27133 24 17 2 0 0 0 0.44373 1 19807 19807 19.257 2.1441 1 3247900 79376 5538 53150 54275 92346 92346 0.02085110643452026 YPIEHGIITN 10 Unmodified _YPIEHGIITN_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8040771484375 2 578.803488 1155.59242 0.87912 0.00050884 0.149 8.6243E-05 1.0281 0.00059508 578.8035066495836 42.901 0.37222 38.216 38.026 38.398 -4.6846 67 23 3 0 0 0 0.027759 2 26034 25892;26034 69.105 32.599 1 48065000 79377 5538 53150 54275 92347;92348 92348 0.02085110643452026 YPIEHGIITNW 11 Unmodified _YPIEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.8413696289062 2 671.843145 1341.67174 -0.028879 -1.9402E-05 1.0649 0.00071547 1.0361 0.00069606 671.843471778517 61.528 0.25701 61.038 60.901 61.158 -0.48932 32 11 4 0 0 0 0.28407 1 33496 33496 27.629 14.586 1 4256900 79378 5538 53151 54276 92349 92349 0.014567575975888758 YPIEHGIITNW 11 Unmodified _YPIEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 671.8441772460938 2 671.843145 1341.67174 NaN NaN NaN NaN NaN NaN NaN 61.135 1 61.091 60.591 61.591 -0.04351 0 0 0 0.15837 1 33355 33355 41.84 14.211 1 79379 5538 53151 54276 92350 92350 0.014567575975888758 YPIEHGIITNW 11 Unmodified _YPIEHGIITNW_ 0 0 0 ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF ENSG00000159251|ENST00000290378|ACTC1 ENSG00000159251|ENST00000290378|ACTC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 671.8441162109375 2 671.843145 1341.67174 0.67906 0.00045622 0.16136 0.00010841 0.84042 0.00056463 671.8433758046705 68.637 0.66582 62.461 62.257 62.923 -6.1757 66 37 2 0 0 0 4.539E-06 3 44988 44733;44863;44988 96.367 72.346 1 31470000 79380 5538 53151 54276 92351;92352;92353 92353 0.014567575975888758 YPIEHGIVT 9 Unmodified _YPIEHGIVT_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 514.7742309570312 2 514.7742 1027.53385 0.26163 0.00013468 -0.39782 -0.00020479 -0.13619 -7.0108E-05 514.7739906874065 39.618 0.20963 39.618 39.53 39.74 0 15 9 2 0 0 0 0.10734 1 21283 21283 32.305 5.4218 1 2910500 79381 1163;13679 53152 54277 92354 92354 0.021180540689556437 YPIEHGIVTN 10 Unmodified _YPIEHGIVTN_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7937622070312 2 571.795663 1141.57677 0.81584 0.00046649 -1.6213 -0.00092702 -0.80541 -0.00046053 571.7946452925164 36.42 0.1968 36.42 36.33 36.527 0 16 9 2 0 0 0 0.13297 1 19309 19309 41.956 19.219 1 4502400 79382 1163;13679 53153 54278 92355 92355 0.011648241264083481 YPIEHGIVTN 10 Unmodified _YPIEHGIVTN_ 0 0 0 ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF ENST00000493945.5_1_7:5567882-5569288:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2998046875 2 571.795663 1141.57677 0.96654 0.00055267 1.9124 0.0010935 2.8789 0.0016461 572.2988395705547 42.036 0.30806 37.352 37.2 37.508 -4.6846 32 18 2 0 0 0 0.0090596 1 25378 25378 89.401 41.652 1 10641000 79383 1163;13679 53153 54278 92356 92356 0.011648241264083481 YPIELHGIGKY 11 Unmodified _YPIELHGIGKY_ 0 0 0 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4 nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.8871459960938 3 430.567801 1288.68157 -0.16243 -6.9938E-05 0.59053 0.00025427 0.4281 0.00018433 430.5678621888727 51.357 0.24858 50.943 50.798 51.046 -0.41351 23 12 3 0 0 0 0.28996 1 27727 27727 15.538 11.132 1 9508100 79384 4112 53154 54279 92357 92357 0.04877945602947875 YPIELHGIGKY 11 Unmodified _YPIELHGIGKY_ 0 0 0 nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4;nc|ENSG00000129071|O95243-6|MBD4 nc|ENSG00000129071|O95243-5|MBD4 nc|ENSG00000129071|O95243-5|MBD4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 430.5677795410156 3 430.567801 1288.68157 0.83424 0.00035919 0.20866 8.9842E-05 1.0429 0.00044904 430.56767763995583 56.394 0.34576 50.417 50.286 50.632 -5.9769 42 19 3 0 0 0 0.004841 2 35963 35963;36107 62.894 44.173 1 20704000 79385 4112 53154 54279 92358;92359 92358 0.04877945602947875 YPIHLVYV 8 Unmodified _YPIHLVYV_ 0 0 0 REV__ENSG00000279263|ENST00000623922|OR2L8 REV__ENSG00000279263|ENST00000623922|OR2L8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 502.2869873046875 2 502.284203 1002.55385 0.5645 0.00028354 3.2964 0.0016557 3.8609 0.0019393 502.28555187510455 47.249 0.32436 47.249 47.103 47.427 0 17 14 2 0 0 0 0.70131 1 25889 25889 17.087 2.5049 1 1395900 + 79386 23992 53155 54280 92360 92360 0.05267849799565738 YPIKKFVL 8 Unmodified _YPIKKFVL_ 0 0 0 REV__nc|ENSG00000058335|Q13972-2|RASGRF1 REV__nc|ENSG00000058335|Q13972-2|RASGRF1 MSMS AL20221201_MKP_PDAC_01 4 503.9782409667969 2 504.318046 1006.62154 NaN NaN NaN NaN NaN NaN NaN 98.675 1 92.499 91.999 92.999 -6.1757 0 0 0 0.9706 1 65490 65490 6.3541 0 1 + 79387 17312 53156 54281 92361 92361 0.11849299730374696 YPINLAAIKM 10 Oxidation (M) _YPINLAAIKM(Oxidation (M))_ YPINLAAIKM(1) YPINLAAIKM(76) 0 0 1 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000163539|O75122|CLASP2;ENSG00000163539|ENST00000682230|CLASP2;nc|ENSG00000163539|O75122-3|CLASP2 nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.8225708007812 2 575.32046 1148.62637 0.74494 0.00042858 0.029988 1.7253E-05 0.77493 0.00044583 575.3200486763883 56.891 0.29615 56.822 56.638 56.935 -0.068737 24 14 2 0 0 0 0.0199 1 30990 30990 75.761 46.679 1 4320800 79388 1119 53157 54282 92362 92362 187 0.057998158108148345 YPIPKPDLIF 10 Unmodified _YPIPKPDLIF_ 0 0 0 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 ENSG00000205903|ENST00000382252|ZNF316 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.844482421875 2 601.844625 1201.6747 0.70798 0.00042609 0.18918 0.00011386 0.89716 0.00053995 601.8448349749538 96.659 0.21721 90.483 90.37 90.587 -6.1757 23 12 2 0 0 0 0.10874 1 64042 64042 59.368 41.222 1 13768000 79389 10386 53158 54283 92363 92363 0.08192632722352755 YPIQRALRL 9 Unmodified _YPIQRALRL_ 0 0 0 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 ENSG00000197102|ENST00000360184|DYNC1H1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 377.2331237792969 3 377.232864 1128.67676 0.90812 0.00034257 -0.189 -7.1296E-05 0.71912 0.00027128 377.2329137755746 46.316 0.55789 46.283 46.038 46.596 -0.033417 43 26 2 0 0 0 0.34134 1 24897 24897 15.248 3.7538 1 3723400 79390 9907 53159 54284 92364 92364 0.11757106250843208 YPIQYLGDF 9 Unmodified _YPIQYLGDF_ 0 0 0 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 ENSG00000133302|ENST00000265140|SLF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2747802734375 2 558.274032 1114.53351 0.52809 0.00029482 -2.2198 -0.0012392 -1.6917 -0.00094442 558.2730930397654 82.298 0.26453 76.122 75.986 76.25 -6.1757 25 13 2 0 0 0 0.042911 1 54014 54014 48.346 8.3885 1 15418000 79391 4503 53160 54285 92365 92365 -0.019173656509110515 YPIRLHPL 8 Unmodified _YPIRLHPL_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.80419921875 2 504.803094 1007.59164 NaN NaN NaN NaN NaN NaN NaN 46.131 1 46.103 45.603 46.603 -0.028011 0 0 0 0.40668 1 24807 24807 53.576 19.388 1 79392 16025;667 53161 54286 92366 92366 0.08814360785038389 YPIRLHPLH 9 Unmodified _YPIRLHPLH_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 382.557373046875 3 382.557459 1144.65055 0.052403 2.0047E-05 0.2159 8.2595E-05 0.2683 0.00010264 382.55750999948236 34.614 0.2347 34.642 34.478 34.713 0.027401 31 10 4 0 0 0 0.21643 1 18224 18224 21.537 10.042 1 11749000 79393 16025;667 53162 54287 92367 92367 0.08400837079352641 YPIRLHPLH 9 Unmodified _YPIRLHPLH_ 0 0 0 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ENSG00000042980|ENST00000265769|ADAM28 ENSG00000042980|ENST00000265769|ADAM28 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.891845703125 3 382.557459 1144.65055 0.75265 0.00028793 0.2374 9.082E-05 0.99005 0.00037875 382.55747428156957 38.641 0.37086 34.272 34.045 34.416 -4.3689 53 23 3 0 0 0 0.2324 1 22764 22764 20.415 4.2654 1 24803000 79394 16025;667 53162 54287 92368 92368 0.08400837079352641 YPISIFIKP 9 Unmodified _YPISIFIKP_ 0 0 0 nc|ENSG00000075711|Q12959-5|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959|DLG1;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959-2|DLG1;nc|ENSG00000075711|Q12959-8|DLG1;nc|ENSG00000075711|Q12959-9|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 nc|ENSG00000075711|Q12959-5|DLG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.3258056640625 2 539.320786 1076.62702 0.22143 0.00011942 3.2637 0.0017602 3.4851 0.0018796 539.3228785848377 75.413 0.29156 75.459 75.288 75.58 0.045959 23 12 2 0 0 0 0.03568 1 41559 41559 52.268 10.174 1 2267700 79395 1168 53163 54288 92369 92369 0.0917697852216861 YPITRTQQL 9 Unmodified _YPITRTQQL_ 0 0 0 ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15 ENSG00000169519|ENST00000407364|METTL15 ENSG00000169519|ENST00000407364|METTL15 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.3108520507812 2 560.31148 1118.60841 1.0706 0.00059986 -0.95252 -0.00053371 0.11806 6.615E-05 560.3109632801071 39.146 0.31903 34.695 34.506 34.825 -4.4509 30 20 2 0 0 0 0.018301 1 23157 23157 65.235 12.967 1 14589000 79396 7881 53164 54289 92370 92370 0.053848168803369845 YPITRTQQL 9 Unmodified _YPITRTQQL_ 0 0 0 ENSG00000169519|ENST00000407364|METTL15;nc|ENSG00000169519|A6NJ78-2|METTL15 ENSG00000169519|ENST00000407364|METTL15 ENSG00000169519|ENST00000407364|METTL15 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 560.31148 1118.60841 -0.081755 -4.5808E-05 -0.17818 -9.9835E-05 -0.25993 -0.00014564 560.3115588733559 34.66 0.18986 34.468 34.351 34.541 -0.19132 -0.11349 0.00056139 NaN 65.235 11 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1679300 79397 7881 53164 54289 0.053848168803369845 YPKANIVAY 9 Unmodified _YPKANIVAY_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 519.78466796875 2 519.784567 1037.55458 -0.2468 -0.00012828 0.44314 0.00023034 0.19634 0.00010206 519.7846889347646 41.216 0.39592 41.216 40.989 41.385 0 56 19 4 0 0 0 0.016184 2 22232 22126;22232 67.344 31.3 1 36036000 79398 3940 53165 54290 92371;92372 92372 0.037306444486148393 YPKANIVAY 9 Unmodified _YPKANIVAY_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7835693359375 2 519.784567 1037.55458 -0.29428 -0.00015296 -0.088556 -4.603E-05 -0.38284 -0.00019899 519.7844656569462 41.552 0.36968 41.249 41.009 41.378 -0.30304 52 16 5 0 0 0 0.016184 2 22053 21938;22053 67.344 35.749 1 71657000 79399 3940 53165 54290 92373;92374 92374 0.037306444486148393 YPKANIVAY 9 Unmodified _YPKANIVAY_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 519.7847900390625 2 519.784567 1037.55458 0.021342 1.1093E-05 0.78642 0.00040877 0.80776 0.00041986 519.7847889280799 41.231 0.35098 41.229 41.03 41.381 -0.0017891 39 16 4 0 0 0 0.016184 1 22016 22016 67.344 31.3 1 11360000 79400 3940 53165 54290 92375 92375 0.037306444486148393 YPKANIVAY 9 Unmodified _YPKANIVAY_ 0 0 0 ENSG00000126261|ENST00000246548|UBA2;ENST00000592841.5_1_19:34919394-34922879:+|nuORF ENSG00000126261|ENST00000246548|UBA2 ENSG00000126261|ENST00000246548|UBA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.78662109375 2 519.784567 1037.55458 0.51171 0.00026598 -0.2311 -0.00012012 0.2806 0.00014585 519.7844848473707 46.518 0.42922 41.438 41.175 41.604 -5.0805 151 59 4 0 0 0 0.026094 2 28601 28601;28744 57.471 28.985 1 464980000 79401 3940 53165 54290 92376;92377 92376 0.037306444486148393 YPKDIYSSF 9 Unmodified _YPKDIYSSF_ 0 0 0 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 ENSG00000196611|ENST00000315274|MMP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2716064453125 2 560.27149 1118.52843 NaN NaN NaN NaN NaN NaN NaN 78.296 1 78.296 77.796 78.796 0 0 0 0 0.82852 1 43513 43513 3.5965 1.2938 1 79402 9850 53166 54291 92378 92378 -0.02609669513526569 YPKDNDIAL 9 Unmodified _YPKDNDIAL_ 0 0 0 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4;nc|ENSG00000137648|Q9NRS4-2|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 nc|ENSG00000137648|Q9NRS4-4|TMPRSS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.769287109375 2 524.769114 1047.52368 0.202 0.000106 1.7877 0.00093814 1.9897 0.0010441 524.7699260525118 40.417 0.42263 40.417 40.236 40.659 0 52 21 3 0 0 0 0.032796 2 21809 21702;21809 53.833 24.751 1 20783000 79403 4954 53167 54292 92379;92380 92380 0.0018144634370855783 YPKGAGRVAF 10 Unmodified _YPKGAGRVAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 355.8662414550781 3 355.866181 1064.57671 -0.10364 -3.6882E-05 0.57027 0.00020294 0.46663 0.00016606 355.8663188579429 29.736 0.26193 29.766 29.632 29.894 0.030106 25 10 3 0 0 0 0.085354 1 15523 15523 35.612 15.159 1 6852900 79404 4931;2996;2524 53168 54293 92381 92381 0.04700868917052503 YPKGAGRVAF 10 Unmodified _YPKGAGRVAF_ 0 0 0 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000137449|ENST00000538197|CPEB2;nc|ENSG00000137449|Q7Z5Q1-7|CPEB2;nc|ENSG00000137449|Q7Z5Q1-5|CPEB2;nc|ENSG00000137449|Q7Z5Q1-4|CPEB2;nc|ENSG00000137449|Q7Z5Q1-6|CPEB2;nc|ENSG00000137449|Q7Z5Q1-3|CPEB2;nc|ENSG00000137449|Q7Z5Q1|CPEB2;nc|ENSG00000113742|Q17RY0-3|CPEB4;ENSG00000113742|ENST00000265085|CPEB4;nc|ENSG00000113742|Q17RY0-2|CPEB4;ENSG00000107864|ENST00000265997|CPEB3;nc|ENSG00000107864|Q8NE35-2|CPEB3 nc|ENSG00000137449|Q7Z5Q1-8|CPEB2;ENSG00000113742|ENST00000265085|CPEB4;ENSG00000107864|ENST00000265997|CPEB3 ENSG00000113742|ENST00000265085|CPEB4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 355.866181 1064.57671 0.63492 0.00022594 0.94891 0.00033769 1.5838 0.00056363 355.86661250231816 30.005 0.18248 29.925 29.792 29.975 -0.080429 0.079481 0.00030674 NaN 35.612 14 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1115600 79405 4931;2996;2524 53168 54293 0.04700868917052503 YPKGATHTMSH 11 Unmodified _YPKGATHTMSH_ 0 0 0 REV__ENSG00000174255|ENST00000482457|ZNF80 REV__ENSG00000174255|ENST00000482457|ZNF80 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5301208496094 3 410.52924 1228.56589 0.40724 0.00016718 0.73621 0.00030223 1.1434 0.00046942 410.5294559732986 52.291 0.48315 52.232 51.983 52.466 -0.058918 56 23 3 0 0 0 0.68427 1 28264 28264 2.6312 0 1 4894500 + 79406 22780 53169 54294 92382 92382 -0.039249015195764514 YPKKEDYIVY 10 Unmodified _YPKKEDYIVY_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 440.2315673828125 3 439.895695 1316.66525 0.67209 0.00029565 0.28419 0.00012502 0.95628 0.00042066 439.8956327362786 36.747 0.34985 36.747 36.566 36.916 0 41 16 4 0 0 0 0.32072 1 19505 19505 28.234 17.168 1 3340900 79407 3664 53170 54295 92383 92383 0.019588196461882035 YPKKEDYIVY 10 Unmodified _YPKKEDYIVY_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-MSMS AL20221201_MKP_PDAC_01 4 440.2308349609375 3 439.895695 1316.66525 0.78713 0.00034625 0.28668 0.00012611 1.0738 0.00047236 440.2301392231669 41.22 0.41906 36.612 36.353 36.772 -4.6079 64 25 3 0 0 0 0.060508 2 24730 24604;24730 41.347 29.119 1 32395000 79408 3664 53170 54295 92384;92385 92385 0.019588196461882035 YPKKEDYIVY 10 Unmodified _YPKKEDYIVY_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-MSMS AL20221201_MKP_PDAC_01 4 659.3414306640625 2 659.339904 1316.66525 0.36909 0.00024336 0.17238 0.00011366 0.54147 0.00035702 659.8414791882655 41.22 0.35082 36.612 36.387 36.738 -4.6079 35 21 2 0 0 0 0.087043 1 24650 24650 49.554 30.192 1 15023000 79409 3664 53170 54295 92386 92386 0.019588196461882035 YPKKEDYIVY 10 Unmodified _YPKKEDYIVY_ 0 0 0 nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU nc|ENSG00000122861|P00749-2|PLAU nc|ENSG00000122861|P00749-2|PLAU MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 659.339904 1316.66525 -0.2236 -0.00014743 1.6963 0.0011184 1.4726 0.00097098 659.3410765722901 37.033 0.18904 36.784 36.729 36.919 -0.2497 0.065713 0.0011495 NaN 49.554 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 897240 79410 3664 53170 54295 0.019588196461882035 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.553955078125 3 380.553492 1138.63865 0.4969 0.0001891 -0.93854 -0.00035716 -0.44164 -0.00016807 380.553378635895 27.44 0.24755 27.393 27.247 27.495 -0.04641 27 11 3 0 0 0 0.37804 1 14121 14121 8.7454 4.8691 1 8345500 79411 625;13067 53171 54296 92387 92387 0.07487175545543323 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 380.8882446289062 3 380.553492 1138.63865 0.23319 8.874E-05 0.74454 0.00028334 0.97772 0.00037208 380.5537751109141 27.354 0.27154 27.382 27.241 27.513 0.028664 23 11 3 0 0 0 0.37804 1 14188 14188 8.7454 3.4485 1 8466000 79412 625;13067 53171 54296 92388 92388 0.07487175545543323 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.3259887695312 2 570.326599 1138.63865 NaN NaN NaN NaN NaN NaN NaN 27.42 1 27.449 26.949 27.949 0.028664 0 0 0 0.61214 1 14250 14250 12.241 2.8575 1 79413 625;13067 53171 54296 92389 92389 0.07487175545543323 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8878173828125 3 380.553492 1138.63865 1.4839 0.00056469 -0.037129 -1.413E-05 1.4467 0.00055056 380.55348013866166 30.802 0.38863 27.305 27.132 27.52 -3.497 44 17 3 0 0 0 0.39863 1 17353 17353 12.241 8.3643 1 109180000 79414 625;13067 53171 54296 92390 92390 0.07487175545543323 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.3280029296875 2 570.326599 1138.63865 1.1353 0.00064752 0.12349 7.0432E-05 1.2588 0.00071795 570.3271266840964 30.85 0.34021 27.353 27.113 27.453 -3.497 33 15 3 0 0 0 0.0074135 2 17366 17366;17473 110.67 64.654 1 45835000 79415 625;13067 53171 54296 92391;92392 92391 0.07487175545543323 YPKKLVQTY 9 Unmodified _YPKKLVQTY_ 0 0 0 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2 ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1 ENSG00000131462|ENST00000251413|TUBG1 MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 380.553492 1138.63865 1.4839 0.00056469 -0.037129 -1.413E-05 1.4467 0.00055056 380.55348013866166 30.802 0.38863 27.305 27.132 27.52 -3.497 -0.055293 -5.0719E-06 NaN 8.7454 44 17 3 NaN NaN NaN NaN 0 NaN NaN 0 109180000 79416 625;13067 53171 54296 0.07487175545543323 YPKKPKDEAF 10 Unmodified _YPKKPKDEAF_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;STAT6|p.R626Q|1|0.22|ENSG00000166888|chr12:57099308-57099308|C/T|missense_variant ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 408.2205810546875 3 408.220401 1221.63937 -0.57564 -0.00023499 0.82909 0.00033845 0.25345 0.00010346 408.2207703793633 18.623 0.17449 18.623 18.529 18.703 0 42 16 3 0 0 0 0.48505 1 9258 9258 10.899 7.3119 1 3632300 79417 7545 53172 54297 92393 92393 0.03741970194550959 YPKKPKDEAF 10 Unmodified _YPKKPKDEAF_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;STAT6|p.R626Q|1|0.22|ENSG00000166888|chr12:57099308-57099308|C/T|missense_variant ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 611.8271484375 2 611.826963 1221.63937 -0.38668 -0.00023658 0.94882 0.00058051 0.56214 0.00034393 612.3286614609004 18.627 0.078695 18.627 18.599 18.678 0 14 9 2 0 0 0 0.68209 1 9276 9276 4.897 2.8373 1 493910 79418 7545 53172 54297 92394 92394 0.03741970194550959 YPKKPKDEAF 10 Unmodified _YPKKPKDEAF_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF;STAT6|p.R626Q|1|0.22|ENSG00000166888|chr12:57099308-57099308|C/T|missense_variant ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.2215270996094 3 408.220401 1221.63937 1.247 0.00050904 0.98903 0.00040374 2.236 0.00091278 408.22086478051716 20.037 0.29918 17.381 17.205 17.505 -2.6564 43 17 4 0 0 0 0.42143 1 10593 10593 17.863 11.24 1 6623500 79419 7545 53172 54297 92395 92395 0.03741970194550959 YPKNRVRSL 9 Unmodified _YPKNRVRSL_ 0 0 0 REV__nc|ENSG00000159069|Q969U6-2|FBXW5 REV__nc|ENSG00000159069|Q969U6-2|FBXW5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5585632324219 3 378.224368 1131.65128 0.075179 2.8435E-05 0.67437 0.00025506 0.74955 0.0002835 378.22460949202014 18.965 0.16914 18.971 18.839 19.008 0.0060463 14 8 2 0 0 0 0.55373 1 9624 9624 4.1895 0 1 1083300 + 79420 21456 53173 54298 92396 92396 0.0907163172842047 YPKNRVRSL 9 Unmodified _YPKNRVRSL_ 0 0 0 REV__nc|ENSG00000159069|Q969U6-2|FBXW5 REV__nc|ENSG00000159069|Q969U6-2|FBXW5 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 378.224368 1131.65128 0.075179 2.8435E-05 0.67437 0.00025506 0.74955 0.0002835 378.22460949202014 18.965 0.16914 18.971 18.839 19.008 0.0060463 0 0 NaN 4.1895 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1083300 + 79421 21456 53173 54298 0.0907163172842047 YPKPALLHSTF 11 Unmodified _YPKPALLHSTF_ 0 0 0 nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1 nc|ENSG00000140105|P23381-2|WARS1 nc|ENSG00000140105|P23381-2|WARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.2370300292969 3 425.236163 1272.68666 0.29579 0.00012578 0.31167 0.00013253 0.60746 0.00025832 425.23637305887394 48.752 0.45085 48.708 48.476 48.927 -0.04369 37 22 2 0 0 0 0.30985 1 26277 26277 25.997 23.154 1 1817900 79422 5208 53174 54299 92397 92397 0.06122249465556706 YPKRPLLGL 9 Unmodified _YPKRPLLGL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8909606933594 3 352.890327 1055.64915 1.1739 0.00041425 0.028903 1.02E-05 1.2028 0.00042444 352.89024919255814 46.801 0.32053 46.767 46.617 46.938 -0.033417 48 15 4 0 0 0 0.28047 2 25154 25154;25251 22.736 7.4878 1 21509000 79423 1536 53175 54300 92398;92399 92398 0.12355202990602265 YPKRPLLGL 9 Unmodified _YPKRPLLGL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.8320922851562 2 528.831852 1055.64915 1.2827 0.00067831 -0.41641 -0.00022021 0.86626 0.0004581 528.8316606848399 46.817 0.30205 46.784 46.617 46.919 -0.033421 36 14 4 0 0 0 0.0090851 1 25176 25176 85.357 43.262 1 6318100 79424 1536 53175 54300 92400 92400 0.12355202990602265 YPKRPLLGL 9 Unmodified _YPKRPLLGL_ 0 0 0 ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24 ENSG00000089737|ENST00000621632|DDX24 ENSG00000089737|ENST00000621632|DDX24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.8909912109375 3 352.890327 1055.64915 1.5549 0.00054872 -0.37642 -0.00013283 1.1785 0.00041588 352.89005396770807 51.364 0.29149 45.715 45.572 45.863 -5.649 23 17 2 0 0 0 0.2001 1 32326 32326 21.537 6.2885 1 37016000 79425 1536 53175 54300 92401 92401 0.12355202990602265 YPLAHAILL 9 Unmodified _YPLAHAILL_ 0 0 0 REV__ENST00000416382.6_1_10:11374735-11374927:+|nuORF REV__ENST00000416382.6_1_10:11374735-11374927:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.8025512695312 2 505.805303 1009.59605 NaN NaN NaN NaN NaN NaN NaN 52.57 1 52.57 52.07 53.07 0 0 0 0 0.38239 1 29098 29098 20.871 0 1 + 79426 26771 53176 54301 92402 92402 0.09163825207951959 YPLALALQRGD 11 Unmodified _YPLALALQRGD_ 0 0 0 ENST00000510377.5_1_4:144106452-144106728:+|nuORF ENST00000510377.5_1_4:144106452-144106728:+|nuORF ENST00000510377.5_1_4:144106452-144106728:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.953125 2 608.837862 1215.66117 NaN NaN NaN NaN NaN NaN NaN 14.789 1 14.794 14.294 15.294 0.0057774 0 0 0 0.9435 1 7347 7347 0 0 1 79427 14587 53177 54302 92403 92403 0.06196774943100536 YPLAVTKY 8 Unmodified _YPLAVTKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 477.7685852050781 2 477.768386 953.522219 0.34473 0.0001647 0.12798 6.1145E-05 0.47271 0.00022585 477.7683459272433 43.232 0.23777 43.232 43.121 43.359 0 21 11 2 0 0 0 0.27285 1 23456 23456 58.679 26.562 1 9133600 79428 263 53178 54303 92404 92404 0.04359857045608351 YPLAVTKY 8 Unmodified _YPLAVTKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7688903808594 2 477.768386 953.522219 0.28849 0.00013783 -0.39899 -0.00019063 -0.11051 -5.2797E-05 477.7682457238718 43.477 0.24765 43.167 43.025 43.272 -0.31039 25 11 3 0 0 0 0.10045 1 23124 23124 99.799 63.755 1 13100000 79429 263 53178 54303 92405 92405 0.04359857045608351 YPLAVTKY 8 Unmodified _YPLAVTKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 477.7692260742188 2 477.768386 953.522219 1.0182 0.00048649 0.18699 8.9336E-05 1.2052 0.00057582 477.76840388478524 48.582 0.3747 43.186 42.962 43.337 -5.3961 56 22 3 0 0 0 0.10045 2 30359 30228;30359 99.799 55.392 1 73426000 79430 263 53178 54303 92406;92407 92407 0.04359857045608351 YPLAVTKY 8 Unmodified _YPLAVTKY_ 0 0 0 ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1 ENSG00000002726|ENST00000360937|AOC1 ENSG00000002726|ENST00000360937|AOC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 477.768386 953.522219 0.53271 0.00025451 -0.51127 -0.00024427 0.02144 1.0243E-05 477.76814321366066 43.139 0.2257 43.124 42.958 43.184 -0.015667 -0.053474 -0.00040585 NaN 99.799 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 2070300 79431 263 53178 54303 0.04359857045608351 YPLDGHIL 8 Unmodified _YPLDGHIL_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.2503051757812 2 464.25036 926.486168 0.4154 0.00019285 0.062424 2.898E-05 0.47783 0.00022183 464.2502594634648 56.484 0.42421 56.484 56.322 56.746 0 39 18 3 0 0 0 0.2655 2 31371 31371;31471 59.795 25.608 1 4253300 79432 5662 53179 54304 92408;92409 92408 0.01998399868762135 YPLDGHIL 8 Unmodified _YPLDGHIL_ 0 0 0 ENSG00000145012|ENST00000617246|LPP;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6 ENSG00000145012|ENST00000617246|LPP ENSG00000145012|ENST00000617246|LPP MULTI-MSMS AL20221201_MKP_PDAC_01 4 464.2504272460938 2 464.25036 926.486168 0.85013 0.00039467 3.0102 0.0013975 3.8603 0.0017922 464.2527642689522 63.304 0.61493 57.129 56.964 57.579 -6.1757 51 34 2 0 0 0 0.35156 2 40855 40855;40998 49.669 24.995 1 11997000 79433 5662 53179 54304 92410;92411 92410 0.01998399868762135 YPLDHHYPKPH 11 Unmodified _YPLDHHYPKPH_ 0 0 0 REV__ENSG00000177051|ENST00000317683|FBXO46 REV__ENSG00000177051|ENST00000317683|FBXO46 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 702.3460693359375 2 702.346386 1402.67822 NaN NaN NaN NaN NaN NaN NaN 64.372 1 64.372 63.872 64.872 0 0 0 0 0.9385 1 35899 35899 3.5965 0 1 + 79434 22959 53180 54305 92412 92412 -0.007013044510586042 YPLDIVRKM 9 Unmodified _YPLDIVRKM_ 0 0 0 nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3 nc|ENSG00000070159|P26045-3|PTPN3 nc|ENSG00000070159|P26045-3|PTPN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 378.5626525878906 3 378.882843 1133.6267 1.4097 0.00053412 -0.77758 -0.00029461 0.63215 0.00023951 378.88270593228197 57.202 0.53822 51.175 50.941 51.48 -6.0275 66 30 3 0 0 0 0.14796 1 36656 36656 20.581 9.0862 1 45397000 79435 1019 53181 54306 92413 92413 0.06523235530676175 YPLDLEGGSEY 11 Unmodified _YPLDLEGGSEY_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.779541015625 2 621.779876 1241.5452 0.65013 0.00040424 -0.4689 -0.00029156 0.18123 0.00011269 621.7795079274965 59.977 0.71712 59.977 59.671 60.388 0 108 32 5 0 0 0 0.0011251 4 33421 33312;33421;33532;33641 81.89 56.491 1 28619000 79436 981 53182 54307 92414;92415;92416;92417 92415 -0.06591213418209918 YPLDLEGGSEY 11 Unmodified _YPLDLEGGSEY_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7793579101562 2 621.779876 1241.5452 NaN NaN NaN NaN NaN NaN NaN 60.787 1 60.298 59.798 60.798 -0.48932 0 0 0 0.86932 1 33105 33105 8.7454 4.801 1 79437 981 53182 54307 92418 92418 -0.06591213418209918 YPLDLEGGSEY 11 Unmodified _YPLDLEGGSEY_ 0 0 0 ENSG00000068438|ENST00000348411|FTSJ1;nc|ENSG00000068438|Q9UET6-2|FTSJ1;ENST00000466371.5_1_X:48339567-48341236:+|nuORF;ENST00000467954.5_1_X:48339852-48341236:+|nuORF;ENST00000490202.5_1_X:48339880-48341236:+|nuORF ENSG00000068438|ENST00000348411|FTSJ1 ENSG00000068438|ENST00000348411|FTSJ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.7803344726562 2 621.779876 1241.5452 0.52421 0.00032594 0.54955 0.0003417 1.0738 0.00066765 621.7801531070478 68.413 0.61274 62.238 61.906 62.518 -6.1757 92 36 3 0 0 0 0.00047726 3 44682 44555;44682;44814 88.954 61.325 1 73972000 79438 981 53182 54307 92419;92420;92421 92420 -0.06591213418209918 YPLDLLLKL 9 Unmodified _YPLDLLLKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 544.3423461914062 2 544.341718 1086.66888 0.11296 6.1488E-05 1.5058 0.00081965 1.6187 0.00088114 544.3424344541891 99.047 0.16555 98.854 98.752 98.917 -0.19321 14 5 3 0 0 0 0.040683 1 54082 54082 49.554 16.769 1 2292800 79439 9854 53183 54308 92422 92422 0.12901534210709542 YPLDLLLKL 9 Unmodified _YPLDLLLKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.3428955078125 2 544.341718 1086.66888 4.1584 0.0022636 -1.1091 -0.00060371 3.0494 0.0016599 544.3410309804832 98.846 0.30992 98.818 98.693 99.003 -0.028282 33 10 5 0 0 0 0.0090524 1 54885 54885 85.642 51.539 1 228840000 79440 9854 53183 54308 92423 92423 0.12901534210709542 YPLDLLLKL 9 Unmodified _YPLDLLLKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.3416748046875 2 544.341718 1086.66888 0.84188 0.00045827 0.19086 0.00010389 1.0327 0.00056216 544.34165211408 100.48 0.24335 94.302 94.202 94.445 -6.1757 52 15 4 0 0 0 0.0044708 1 67163 67163 118.89 62.718 1 888410000 79441 9854 53183 54308 92424 92424 0.12901534210709542 YPLDLLLKL 9 Unmodified _YPLDLLLKL_ 0 0 0 ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4;ENST00000531290.5_1_11:118889505-118889751:+|nuORF;nc|ENSG00000196655|Q9Y296-2|TRAPPC4 ENST00000447216.2_1_11:118889505-118891019:+|nuORF ENST00000447216.2_1_11:118889505-118891019:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 544.3412475585938 2 544.341718 1086.66888 NaN NaN NaN NaN NaN NaN NaN 100.62 1 94.448 93.948 94.948 -6.1757 0 0 0 0.34649 1 67334 67334 22.736 3.2973 1 79442 9854 53183 54308 92425 92425 0.12901534210709542 YPLDPTTEHIY 11 Unmodified _YPLDPTTEHIY_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000489826.1_1_3:49847513-49847846:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 675.3261108398438 2 674.824618 1347.63468 -0.065453 -4.4169E-05 -0.18456 -0.00012455 -0.25001 -0.00016872 674.8245629136721 52.546 0.32581 52.546 52.376 52.702 0 45 14 4 0 0 0 0.00013798 2 29047 29047;29162 92.653 81.159 1 16641000 79443 9027 53184 54309 92426;92427 92426 -0.025229587388594155 YPLDPTTEHIY 11 Unmodified _YPLDPTTEHIY_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000489826.1_1_3:49847513-49847846:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 674.8248291015625 2 674.824618 1347.63468 0.34124 0.00023028 -0.48567 -0.00032774 -0.14443 -9.7463E-05 674.8243672444372 53.153 0.28799 52.701 52.535 52.823 -0.45173 24 14 2 0 0 0 0.00013798 1 28738 28738 92.653 78.747 1 9470900 79444 9027 53184 54309 92428 92428 -0.025229587388594155 YPLDPTTEHIY 11 Unmodified _YPLDPTTEHIY_ 0 0 0 ENSG00000182179|ENST00000333486|UBA7;ENST00000489826.1_1_3:49847513-49847846:-|nuORF ENSG00000182179|ENST00000333486|UBA7 ENSG00000182179|ENST00000333486|UBA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 675.3258666992188 2 674.824618 1347.63468 0.8564 0.00057792 0.11048 7.4557E-05 0.96689 0.00065248 674.8249516325544 59.891 0.43679 53.776 53.604 54.041 -6.1147 59 24 3 0 0 0 4.0594999999999996E-36 2 38419 38419;38553 168.66 143.67 1 61736000 79445 9027 53184 54309 92429;92430 92429 -0.025229587388594155 YPLDVQKEF 9 Unmodified _YPLDVQKEF_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.791748046875 2 569.792589 1137.57063 0.42234 0.00024065 -2.4107 -0.0013736 -1.9884 -0.001133 569.789768033591 52.733 0.47351 52.733 52.508 52.982 0 51 21 4 0 0 0 0.0085386 1 29135 29135 100.09 60.133 1 16814000 79446 2099 53185 54310 92431 92431 0.0073430589486633835 YPLDVQKEF 9 Unmodified _YPLDVQKEF_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7923583984375 2 569.792589 1137.57063 0.54532 0.00031072 -3.6799 -0.0020968 -3.1345 -0.001786 570.2928540602339 53.217 0.56949 52.765 52.496 53.065 -0.45173 90 28 4 0 0 0 0.033587 1 28840 28840 53.404 30.256 1 6641600 79447 2099 53185 54310 92432 92432 0.0073430589486633835 YPLDVQKEF 9 Unmodified _YPLDVQKEF_ 0 0 0 ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS ENSG00000103061|ENST00000263997|SLC7A6OS MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.7931518554688 2 569.792589 1137.57063 1.0466 0.00059636 -3.3512 -0.0019095 -2.3046 -0.0013131 569.789887670285 59.5 0.59578 53.386 53.008 53.604 -6.1147 93 32 4 0 0 0 0.069655 1 38256 38256 40.239 22.093 1 68926000 79448 2099 53185 54310 92433 92433 0.0073430589486633835 YPLEAVRM 8 Oxidation (M) _YPLEAVRM(Oxidation (M))_ YPLEAVRM(1) YPLEAVRM(46) 0 0 1 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENST00000570166.1_1_15:72495361-72499152:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7547607421875 2 497.754953 993.495352 -0.40484 -0.00020151 0.72763 0.00036218 0.32279 0.00016067 497.75570162012303 34.481 0.28794 34.481 34.326 34.614 0 46 14 4 0 0 0 0.38465 1 18154 18154 46.021 15.796 1 23892000 79449 954 53186 54311 92434 92434 152 -0.0016557483720589516 YPLEAVRM 8 Oxidation (M) _YPLEAVRM(Oxidation (M))_ 0 0 1 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENST00000570166.1_1_15:72495361-72499152:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 497.754953 993.495352 0.21151 0.00010528 -1.1408 -0.00056785 -0.92931 -0.00046257 497.7554437416733 34.43 0.12432 34.457 34.416 34.54 0.027401 -0.015494 -0.0010539 NaN 46.021 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 422540 79450 954 53186 54311 152 -0.0016557483720589516 YPLEAVRM 8 Unmodified _YPLEAVRM_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENST00000570166.1_1_15:72495361-72499152:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7581481933594 2 489.757495 977.500437 1.0086 0.00049396 -0.65216 -0.0003194 0.35643 0.00017456 489.7572739562417 50.354 0.23923 49.962 49.753 49.992 -0.3923 20 11 2 0 0 0 0.66338 1 27053 27053 20.454 4.6064 1 2991400 79451 954 53186 54312 92435 92435 0.010787290254029358 YPLEAVRM 8 Unmodified _YPLEAVRM_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF;ENST00000570166.1_1_15:72495361-72499152:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20221201_MKP_PDAC_01 4 489.7597351074219 2 489.757495 977.500437 0.2269 0.00011112 0.98914 0.00048444 1.216 0.00059556 489.7582419439269 56.016 0.48096 50.095 49.861 50.342 -5.9211 71 28 4 0 0 0 0.54555 2 35747 35616;35747 30.637 7.4881 1 55334000 79452 954 53186 54312 92436;92437 92437 0.010787290254029358 YPLEDATHIAL 11 Unmodified _YPLEDATHIAL_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2 ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.8225708007812 2 621.821878 1241.6292 0.32567 0.00020251 -0.67811 -0.00042166 -0.35244 -0.00021915 621.8214084174444 65.847 0.44322 65.847 65.648 66.091 0 52 22 3 0 0 0 0.0052184 2 36796 36680;36796 74.929 49.53 1 4086800 79453 9831 53187 54313 92438;92439 92439 0.0180536246932661 YPLEDATHIAL 11 Unmodified _YPLEDATHIAL_ 0 0 0 ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2 ENST00000493555.5_1_1:118439453-118462815:-|nuORF ENST00000493555.5_1_1:118439453-118462815:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8247680664062 2 621.821878 1241.6292 0.14311 8.899E-05 0.79032 0.00049144 0.93343 0.00058043 621.8222353435791 66.32 0.3931 65.837 65.757 66.15 -0.48323 35 19 2 0 0 0 0.043669 2 36205 36205;36320 52.268 30.676 1 2647300 79454 9831 53187 54313 92440;92441 92440 0.0180536246932661 YPLEDETFE 9 Unmodified _YPLEDETFE_ 0 0 0 REV__ENSG00000100906|ENST00000216797|NFKBIA REV__ENSG00000100906|ENST00000216797|NFKBIA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.7491455078125 2 571.748044 1141.48154 0.18056 0.00010324 -2.3733 -0.0013569 -2.1928 -0.0012537 571.7464336358761 52.178 1.3169 52.178 51.15 52.467 0 160 59 4 0 0 0 0.30562 1 28916 28916 16.942 3.4344 1 25808000 + 79455 18114 53188 54314 92442 92442 -0.08354573855331182 YPLEDHTEF 9 Unmodified _YPLEDHTEF_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7559204101562 2 575.756204 1149.49785 0.36332 0.00020918 0.041369 2.3819E-05 0.40469 0.000233 575.7561382355889 45.663 0.3603 45.663 45.478 45.838 0 69 18 5 0 0 0 0.008513 2 24825 24825;24927 112.59 66.572 1 109090000 79456 2724 53189 54315 92443;92444 92443 -0.0709144789855145 YPLEDHTEF 9 Unmodified _YPLEDHTEF_ 0 0 0 nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD nc|ENSG00000110514|Q8WXG6-8|MADD nc|ENSG00000110514|Q8WXG6-8|MADD MULTI-MSMS AL20221201_MKP_PDAC_01 4 576.2593383789062 2 575.756204 1149.49785 0.56655 0.0003262 -0.055324 -3.1853E-05 0.51123 0.00029434 575.7567812267924 52.134 0.38292 46.4 46.18 46.563 -5.7345 56 25 3 0 0 0 0.0059585 2 32798 32798;32939 104.8 60.392 1 94124000 79457 2724 53189 54315 92445;92446 92445 -0.0709144789855145 YPLEDLPSL 9 Unmodified _YPLEDLPSL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7745361328125 2 523.773865 1045.53318 0.46212 0.00024205 1.0543 0.00055221 1.5164 0.00079426 523.7743286032965 81.009 0.35566 81.009 80.84 81.195 0 39 16 3 0 0 0 0.03327 2 45009 44918;45009 53.576 30.427 1 2048900 79458 1109 53190 54316 92447;92448 92448 0.012232146292262769 YPLEDLPSL 9 Unmodified _YPLEDLPSL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1046.541259765625 1 1046.54045 1045.53318 -0.42625 -0.00044609 2.0134 0.0021071 1.5872 0.001661 1046.5424115998908 81.008 0.18361 81.008 80.937 81.121 0 11 8 2 0 0 0 0.16226 1 44987 44987 26.884 11.036 1 506030 79459 1109 53190 54316 92449 92449 0.012232146292262769 YPLEDLPSL 9 Unmodified _YPLEDLPSL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7747192382812 2 523.773865 1045.53318 0.64007 0.00033525 0.8558 0.00044825 1.4959 0.0007835 523.7743090003635 81.562 0.35321 81.067 80.857 81.21 -0.4952 39 14 3 0 0 0 0.06187 2 44616 44616;44712 42.095 23.96 1 1412100 79460 1109 53190 54316 92450;92451 92450 0.012232146292262769 YPLEDLPSL 9 Unmodified _YPLEDLPSL_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.774169921875 2 523.773865 1045.53318 1.2192 0.0006386 -0.23083 -0.0001209 0.98839 0.00051769 523.7736808888513 89.087 0.45837 82.911 82.669 83.127 -6.1757 35 25 2 0 0 0 0.013472 2 58853 58705;58853 70.716 26.309 1 17576000 79461 1109 53190 54316 92452;92453 92453 0.012232146292262769 YPLEDLPSLLY 11 Unmodified _YPLEDLPSLLY_ 0 0 0 nc|ENSG00000073614|P29375-2|KDM5A;ENSG00000073614|ENST00000399788|KDM5A nc|ENSG00000073614|P29375-2|KDM5A nc|ENSG00000073614|P29375-2|KDM5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 661.8497924804688 2 661.847561 1321.68057 1.0866 0.00071916 0.53753 0.00035576 1.6241 0.0010749 661.8482833365006 100.79 0.14629 94.615 94.541 94.688 -6.1757 19 9 3 0 0 0 0.18424 1 67530 67530 49.933 29.518 1 32948000 79462 1109 53191 54317 92454 92454 0.032596864433799055 YPLEGSRSY 9 Unmodified _YPLEGSRSY_ 0 0 0 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.2590942382812 2 536.258914 1070.50327 0.27982 0.00015005 -0.48893 -0.00026219 -0.20911 -0.00011214 536.2589341262658 31.495 0.32221 31.495 31.318 31.64 0 45 15 4 0 0 0 0.047788 2 16361 16361;16463 45.7 15.063 1 15583000 79463 8013 53192 54318 92455;92456 92455 -0.029157243160852886 YPLEGSRSY 9 Unmodified _YPLEGSRSY_ 0 0 0 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 ENSG00000170677|ENST00000397942|SOCS6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.2598876953125 2 536.258914 1070.50327 1.1124 0.00059655 -0.40249 -0.00021584 0.70994 0.00038071 536.2586768374794 35.785 0.38865 31.592 31.382 31.77 -4.1928 64 24 3 0 0 0 0.0094097 2 20865 20731;20865 82.529 25.058 1 31551000 79464 8013 53192 54318 92457;92458 92458 -0.029157243160852886 YPLEHPFDF 9 Unmodified _YPLEHPFDF_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 582.7715454101562 2 582.771657 1163.52876 0.14784 8.6158E-05 -0.010791 -6.2885E-06 0.13705 7.9869E-05 582.7713360917136 69.693 0.26054 69.693 69.578 69.839 0 22 12 2 0 0 0 0.095405 1 38817 38817 34.102 22.462 1 996990 79465 7454 53193 54319 92459 92459 -0.046462497936772706 YPLEHPFDF 9 Unmodified _YPLEHPFDF_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7681884765625 2 582.771657 1163.52876 0.0366 2.1329E-05 -0.16648 -9.7018E-05 -0.12988 -7.5689E-05 582.771413414889 70.2 0.30638 69.721 69.586 69.892 -0.47903 38 16 3 0 0 0 0.022193 2 38338 38338;38443 61.357 48.315 1 7978200 79466 7454 53193 54319 92460;92461 92460 -0.046462497936772706 YPLEKGHLF 9 Unmodified _YPLEKGHLF_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;ENST00000464020.1_1_7:116859112-116863031:+|nuORF;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 368.5343322753906 3 368.53432 1102.58113 0.43838 0.00016156 -0.026853 -9.8963E-06 0.41153 0.00015166 368.53444041167194 46.309 0.27258 45.973 45.8 46.073 -0.33664 27 13 3 0 0 0 0.16226 1 24730 24730 24.991 16.246 1 4022700 79467 289 53194 54320 92462 92462 0.033943333399292897 YPLEKGHLF 9 Unmodified _YPLEKGHLF_ 0 0 0 nc|ENSG00000004866|Q9NRC1|ST7;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;nc|ENSG00000004866|Q9NRC1-6|ST7;nc|ENSG00000004866|Q9NRC1-5|ST7;nc|ENSG00000004866|Q9NRC1-4|ST7;ENST00000464020.1_1_7:116859112-116863031:+|nuORF;nc|ENSG00000007341|Q8TDW4-3|ST7L;ENSG00000007341|ENST00000358039|ST7L;nc|ENSG00000007341|Q8TDW4-6|ST7L;nc|ENSG00000007341|Q8TDW4-5|ST7L;nc|ENSG00000007341|Q8TDW4-7|ST7L;nc|ENSG00000007341|Q8TDW4-4|ST7L nc|ENSG00000004866|Q9NRC1|ST7 nc|ENSG00000004866|Q9NRC1|ST7 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 368.53432 1102.58113 0.45022 0.00016592 1.128 0.00041569 1.5782 0.00058162 368.8690085909165 46.026 0.20132 45.998 45.905 46.107 -0.028011 0.012684 0.00079581 NaN 24.991 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 980470 79468 289 53194 54320 0.033943333399292897 YPLEPRTETY 10 Unmodified _YPLEPRTETY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.8124389648438 2 634.81151 1267.60847 0.44034 0.00027953 0.6635 0.0004212 1.1038 0.00070073 634.8120266279767 38.656 0.38583 38.656 38.426 38.811 0 62 18 4 0 0 0 0.022967 2 20699 20589;20699 72.968 49.178 1 16445000 79469 1623 53195 54321 92463;92464 92464 -0.01463227910335263 YPLEPRTETY 10 Unmodified _YPLEPRTETY_ 0 0 0 ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;nc|ENSG00000092929|Q70J99-2|UNC13D;ENST00000591563.5_1_17:73836050-73840487:-|nuORF ENSG00000092929|ENST00000207549|UNC13D ENSG00000092929|ENST00000207549|UNC13D MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.8123168945312 2 634.81151 1267.60847 0.43199 0.00027423 -0.051742 -3.2847E-05 0.38025 0.00024138 634.8113002035739 44.396 0.43658 39.544 39.294 39.73 -4.852 68 31 3 0 0 0 0.0044938 2 27109 26973;27109 100.09 63.585 1 39166000 79470 1623 53195 54321 92465;92466 92466 -0.01463227910335263 YPLERGFIY 9 Unmodified _YPLERGFIY_ 0 0 0 ENST00000293880.9_1_11:57098199-57100416:-|nuORF;ENSG00000149136|ENST00000278412|SSRP1 ENST00000293880.9_1_11:57098199-57100416:-|nuORF ENST00000293880.9_1_11:57098199-57100416:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.3035278320312 2 579.303124 1156.5917 0.10987 6.3648E-05 -0.21901 -0.00012687 -0.10914 -6.3223E-05 579.3034674077736 61.595 0.19131 61.108 61.011 61.202 -0.48764 13 8 2 0 0 0 0.1685 1 33580 33580 26.268 7.0112 1 1050200 79471 5985 53196 54322 92467 92467 0.019663159944002473 YPLESRPSL 9 Unmodified _YPLESRPSL_ 0 0 0 nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF nc|ENSG00000137497|Q14980-2|NUMA1 nc|ENSG00000137497|Q14980-2|NUMA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.28466796875 2 531.284931 1060.55531 NaN NaN NaN NaN NaN NaN NaN 43.007 1 43.007 42.507 43.507 0 0 0 0 0.19623 1 23329 23329 31.268 0.6318 1 79472 4940 53197 54323 92468 92468 0.027454390976799914 YPLEVTKL 8 Unmodified _YPLEVTKL_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.7820129394531 2 481.781493 961.548434 0.77452 0.00037315 -0.52782 -0.00025429 0.2467 0.00011886 481.7812186052843 54.081 0.32378 54.081 53.923 54.246 0 24 14 2 0 0 0 0.44637 1 29978 29978 39.95 10.868 1 5485100 79473 2250 53198 54324 92469 92469 0.06612126217078185 YPLEVTKL 8 Unmodified _YPLEVTKL_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.7811584472656 2 481.781493 961.548434 0.13219 6.3689E-05 0.12073 5.8167E-05 0.25293 0.00012186 481.781839811682 54.531 0.23352 54.064 53.948 54.182 -0.46664 23 11 3 0 0 0 0.36898 1 29539 29539 47.749 15.443 1 2228200 79474 2250 53198 54324 92470 92470 0.06612126217078185 YPLEVTKL 8 Unmodified _YPLEVTKL_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MSMS AL20221201_MKP_PDAC_01 4 481.78271484375 2 481.781493 961.548434 NaN NaN NaN NaN NaN NaN NaN 60.08 1 53.965 53.465 54.465 -6.1147 0 0 0 0.26516 1 38637 38637 66.457 10.28 1 79475 2250 53198 54324 92471 92471 0.06612126217078185 YPLEVTKLIY 10 Unmodified _YPLEVTKLIY_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.85546875 2 619.855189 1237.69583 0.50933 0.00031571 0.63903 0.0003961 1.1484 0.00071182 619.8554523306208 74.514 0.36487 74.56 74.387 74.751 0.045959 59 15 5 0 0 0 0.0062542 2 41127 41028;41127 97.741 52.041 1 36706000 79476 2250 53199 54325 92472;92473 92473 0.08648598031231813 YPLEVTKLIY 10 Unmodified _YPLEVTKLIY_ 0 0 0 ENSG00000104884|ENST00000391945|ERCC2;nc|ENSG00000104884|P18074-2|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 ENSG00000104884|ENST00000391945|ERCC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 619.8555908203125 2 619.855189 1237.69583 0.90246 0.0005594 0.03831 2.3746E-05 0.94077 0.00058314 619.8552093928943 89.767 0.82327 83.591 83.165 83.988 -6.1757 81 45 2 0 0 0 0.0032957 3 59449 59204;59323;59449 117.84 72.138 1 103000000 79477 2250 53199 54325 92474;92475;92476 92476 0.08648598031231813 YPLEYGPL 8 Unmodified _YPLEYGPL_ 0 0 0 REV__ENSG00000143303|ENST00000368216|METTL25B REV__ENSG00000143303|ENST00000368216|METTL25B MULTI-MSMS AL20221201_MKP_PDAC_01 4 951.4812622070312 1 951.482211 950.474934 0.67015 0.00063764 -1.0772 -0.0010249 -0.407 -0.00038725 951.4819165283978 99.27 0.4404 93.095 92.94 93.38 -6.1757 47 27 2 0 0 0 0.35156 1 66311 66311 49.669 0 1 50195000 + 79478 20620 53200 54326 92477 92477 -0.0022842222538201895 YPLFQSTLL 9 Unmodified _YPLFQSTLL_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.3009643554688 2 541.30005 1080.58555 0.10092 5.4628E-05 1.2838 0.00069491 1.3847 0.00074954 541.3007454945168 58.17 0.43113 57.68 57.513 57.944 -0.48974 33 20 2 0 0 0 0.06187 1 31671 31671 42.095 2.1372 1 2124000 + 79479 20496 53201 54327 92478 92478 0.048477977628635927 YPLFQSTLL 9 Unmodified _YPLFQSTLL_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 541.30005 1080.58555 0.10092 5.4628E-05 1.2838 0.00069491 1.3847 0.00074954 541.3007454945168 58.17 0.43113 57.68 57.513 57.944 -0.48974 -0.038241 0.00013407 NaN 42.095 33 20 2 NaN NaN NaN NaN 0 NaN NaN 0 2124000 + 79480 20496 53201 54327 0.048477977628635927 YPLGDIKIVDF 11 Unmodified _YPLGDIKIVDF_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.3504028320312 2 640.350271 1278.68599 0.27574 0.00017657 0.19184 0.00012284 0.46757 0.00029941 640.3502423883839 84.433 0.32299 83.933 83.753 84.076 -0.49961 45 14 4 0 0 0 0.12819 2 46248 46145;46248 39.213 29.139 1 4334300 79481 1323 53202 54328 92479;92480 92480 0.0577941002584339 YPLGDIKIVDF 11 Unmodified _YPLGDIKIVDF_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.351318359375 2 640.350271 1278.68599 1.1843 0.00075835 -0.12304 -7.8786E-05 1.0612 0.00067956 640.3502831799178 97.636 0.3054 91.461 91.295 91.6 -6.1757 42 18 3 0 0 0 0.00029288 2 64643 64643;64765 90.964 67.175 1 65088000 79482 1323 53202 54328 92481;92482 92481 0.0577941002584339 YPLHITALY 9 Unmodified _YPLHITALY_ 0 0 0 REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.80029296875 2 545.800217 1089.58588 -0.16936 -9.2435E-05 0.69866 0.00038133 0.5293 0.00028889 545.8006607914645 22.656 0.16391 22.656 22.59 22.754 0 10 7 2 0 0 0 0.58865 1 11549 11549 2.0598 0 1 619610 + 79483 24408 53203 54329 92483 92483 0.044672174827155686 YPLHLQPPF 9 Unmodified _YPLHLQPPF_ 0 0 0 REV__ENST00000589882.1_1_6:41248622-41249060:-|nuORF REV__ENST00000589882.1_1_6:41248622-41249060:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.304931640625 2 556.300384 1110.58622 1.1251 0.00062591 2.2 0.0012238 3.3251 0.0018498 556.300686534579 87.461 0.65308 81.286 81.112 81.765 -6.1757 83 35 4 0 0 0 0.18465 1 57821 57821 24.674 3.8027 1 30336000 + 79484 29143 53204 54330 92484 92484 0.03534637202551494 YPLIDEQIL 9 Unmodified _YPLIDEQIL_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.29833984375 2 552.30279 1102.59103 0.55817 0.00030828 -4.1017 -0.0022654 -3.5435 -0.0019571 552.3004474382801 46.263 0.19408 45.926 45.84 46.034 -0.33664 15 9 2 0 0 0 0.10734 1 24760 24760 32.305 1.0371 1 6882900 + 79485 22428 53205 54331 92485 92485 0.043834765546762355 YPLIDEQIL 9 Unmodified _YPLIDEQIL_ 0 0 0 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 REV__nc|ENSG00000169855|Q9Y6N7-6|ROBO1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 552.30279 1102.59103 0.55817 0.00030828 -4.1017 -0.0022654 -3.5435 -0.0019571 552.3004474382801 46.263 0.19408 45.926 45.84 46.034 -0.33664 0 0 NaN 32.305 15 9 2 NaN NaN NaN NaN 0 NaN NaN 0 6882900 + 79486 22428 53205 54331 0.043834765546762355 YPLIFYRF 8 Unmodified _YPLIFYRF_ 0 0 0 REV__ENSG00000175548|ENST00000308742|ALG10B REV__ENSG00000175548|ENST00000308742|ALG10B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.309814453125 2 559.805303 1117.59605 1.5128 0.0008469 1.863 0.0010429 3.3758 0.0018898 559.8061990027506 71.133 0.34064 71.169 71.021 71.361 0.035545 29 14 3 0 0 0 8.7369 1 39247 39247 10.183 3.8293 1 1912200 + 79487 22880 53206 54332 92486 92486 0.04195825207921189 YPLIQNWWTRR 11 Unmodified _YPLIQNWWTRR_ 0 0 0 ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4 ENSG00000151572|ENST00000392977|ANO4 ENSG00000151572|ENST00000392977|ANO4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 511.6090087890625 3 511.608882 1531.80482 0.45816 0.0002344 -0.66985 -0.0003427 -0.21169 -0.0001083 511.9430905708223 47.611 0.20164 47.259 47.165 47.367 -0.3526 22 9 3 0 0 0 0.72981 1 25538 25538 1.4551 0 1 6412700 79488 6124 53207 54333 92487 92487 0.06018621774046551 YPLIQNWWTRR 11 Unmodified _YPLIQNWWTRR_ 0 0 0 ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4 ENSG00000151572|ENST00000392977|ANO4 ENSG00000151572|ENST00000392977|ANO4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 511.608882 1531.80482 0.45816 0.0002344 -0.66985 -0.0003427 -0.21169 -0.0001083 511.9430905708223 47.611 0.20164 47.259 47.165 47.367 -0.3526 -0.049619 0.00050733 NaN 1.4551 22 9 3 NaN NaN NaN NaN 0 NaN NaN 0 6412700 79489 6124 53207 54333 0.06018621774046551 YPLIQNWWTRR 11 Unmodified _YPLIQNWWTRR_ 0 0 0 ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4 ENSG00000151572|ENST00000392977|ANO4 ENSG00000151572|ENST00000392977|ANO4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 511.608882 1531.80482 1.0379 0.00053101 -1.3806 -0.00070634 -0.34271 -0.00017533 511.6081607062813 47.397 0.21909 47.358 47.258 47.477 -0.038643 0.049619 -0.00058359 NaN 1.4551 23 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1707300 79490 6124 53207 54333 0.06018621774046551 YPLLHALDT 9 Unmodified _YPLLHALDT_ 0 0 0 REV__ENSG00000167680|ENST00000586582|SEMA6B REV__ENSG00000167680|ENST00000586582|SEMA6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.7818603515625 2 521.782025 1041.5495 0.05397 2.816E-05 -0.4318 -0.00022531 -0.37783 -0.00019714 521.7817770680506 40.631 0.32277 40.631 40.451 40.774 0 56 17 4 0 0 0 0.16226 1 21796 21796 26.884 1.4843 1 44874000 + 79491 22241 53208 54334 92488 92488 0.030383405859765844 YPLLIQKYL 9 Unmodified _YPLLIQKYL_ 0 0 0 ENST00000550703.6_1_12:111064249-111066631:+|nuORF ENST00000550703.6_1_12:111064249-111066631:+|nuORF ENST00000550703.6_1_12:111064249-111066631:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 384.5821838378906 3 384.23387 1149.67978 -0.10355 -3.9786E-05 1.5595 0.00059923 1.456 0.00055944 384.2346555864521 35.45 0.18482 35.475 35.373 35.558 0.024967 18 8 3 0 0 0 0.21885 1 18703 18703 0.96228 0.26461 1 1990700 79492 15166 53209 54335 92489 92489 0.11092936585009738 YPLLQDPAY 9 Unmodified _YPLLQDPAY_ 0 0 0 ENSG00000166986|ENST00000262027|MARS1;nc|ENSG00000166986|P56192-2|MARS1;ENST00000553162.5_1_12:57881873-57883795:+|nuORF ENSG00000166986|ENST00000262027|MARS1 ENSG00000166986|ENST00000262027|MARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2741088867188 2 540.274032 1078.53351 0.22372 0.00012087 1.0279 0.00055532 1.2516 0.00067619 540.2741195636336 62.952 0.369 62.952 62.727 63.096 0 40 15 3 0 0 0 0.06187 1 35096 35096 42.095 11.87 1 7446800 79493 7561 53210 54336 92490 92490 -0.0026136565090837394 YPLLSYAL 8 Unmodified _YPLLSYAL_ 0 0 0 REV__ENST00000571074.5_1_17:7530728-7531173:-|nuORF REV__ENST00000571074.5_1_17:7530728-7531173:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 470.2608337402344 2 470.262936 938.51132 NaN NaN NaN NaN NaN NaN NaN 97.44 1 91.265 90.765 91.765 -6.1757 0 0 0 0.93066 1 64575 64575 14.582 0 1 + 79494 28976 53211 54337 92491 92491 0.039604546713121636 YPLLVILHF 9 Unmodified _YPLLVILHF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8366088867188 2 557.836603 1113.65865 2.9734 0.0016587 0.2478 0.00013823 3.2212 0.0017969 557.8367153719781 99.876 0.15884 99.84 99.747 99.905 -0.036301 16 5 4 0 0 0 0.0079702 1 55474 55474 109.15 63.404 1 15563000 79495 3125 53212 54338 92492 92492 0.1063697127613068 YPLLVILHF 9 Unmodified _YPLLVILHF_ 0 0 0 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 ENSG00000115446|ENST00000357765|UNC50 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.83740234375 2 557.836603 1113.65865 1.6435 0.00091682 -0.37014 -0.00020648 1.2734 0.00071034 557.8363794061282 100.97 0.11604 94.799 94.734 94.85 -6.1757 10 6 2 0 0 0 0.01018 1 67689 67689 79.935 43.468 1 30525000 79496 3125 53212 54338 92493 92493 0.1063697127613068 YPLLVQKL 8 Unmodified _YPLLVQKL_ 0 0 0 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 487.3099975585938 2 487.307678 972.600803 NaN NaN NaN NaN NaN NaN NaN 61.979 1 61.947 61.447 62.447 -0.032787 0 0 0 0.59893 1 33841 33841 34.187 7.8461 1 79497 3577 53213 54339 92494 92494 0.11340709350690759 YPLLVQKL 8 Unmodified _YPLLVQKL_ 0 0 0 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 ENSG00000121316|ENST00000240617|PLBD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 487.2646179199219 2 487.307678 972.600803 0.79525 0.00038753 0.81532 0.00039731 1.6106 0.00078484 487.30820560123976 67.109 0.35572 60.933 60.843 61.199 -6.1757 31 19 2 0 0 0 0.46494 1 43813 43813 38.151 18.712 1 7815300 79498 3577 53213 54339 92495 92495 0.11340709350690759 YPLMTHTE 8 Unmodified _YPLMTHTE_ 0 0 0 REV__GPI|p.A337T|1|0.03|ENSG00000105220|chr19:34394013-34394013|G/A|missense_variant REV__GPI|p.A337T|1|0.03|ENSG00000105220|chr19:34394013-34394013|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.2295227050781 2 496.23131 990.448068 0.51668 0.00025639 -0.74368 -0.00036904 -0.227 -0.00011265 496.2302130440891 38.974 0.28411 38.974 38.811 39.096 0 22 12 3 0 0 0 0.79669 1 20895 20895 8.5933 0 1 1231200 + 79499 29353 53214 54340 92496 92496 -0.04753854108219002 YPLNSYEL 8 Unmodified _YPLNSYEL_ 0 0 0 ENSG00000176142|ENST00000319172|TMEM39A ENSG00000176142|ENST00000319172|TMEM39A ENSG00000176142|ENST00000319172|TMEM39A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.7445373535156 2 499.745108 997.475663 0.63923 0.00031945 0.90467 0.0004521 1.5439 0.00077156 499.74555912771416 60.805 0.46474 60.805 60.581 61.045 0 43 19 3 0 0 0 0.67481 1 33872 33872 19.439 2.4967 1 1533200 79500 8567 53215 54341 92497 92497 -0.023176275763375997 YPLPATPAL 9 Unmodified _YPLPATPAL_ 0 0 0 REV__ENSG00000139722|ENST00000267202|VPS37B REV__ENSG00000139722|ENST00000267202|VPS37B MSMS AL20221201_MKP_PDAC_01 4 471.7666320800781 2 471.768386 941.522219 NaN NaN NaN NaN NaN NaN NaN 24.504 1 21.676 21.176 22.176 -2.8273 0 0 0 0.76439 1 13344 13344 7.2892 1.0834 1 + 79501 20430 53216 54342 92498 92498 0.04911857045601664 YPLPDDPSV 9 Unmodified _YPLPDDPSV_ 0 0 0 nc|ENSG00000138119|Q9NZM1-6|MYOF;nc|ENSG00000138119|Q9NZM1-3|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF nc|ENSG00000138119|Q9NZM1-6|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.7442321777344 2 501.742565 1001.47058 0.79279 0.00039778 0.17496 8.7783E-05 0.96774 0.00048556 501.7427685616142 53.786 0.34637 53.786 53.665 54.011 0 23 15 2 0 0 0 0.087258 1 29869 29869 36.044 21.206 1 1641400 79502 5021 53217 54343 92499 92499 -0.030099314389531173 YPLPEHRSTAL 11 Unmodified _YPLPEHRSTAL_ 0 0 0 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 ENSG00000164961|ENST00000318410|WASHC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.8954772949219 3 428.562938 1282.66699 1.2084 0.00051787 -1.3251 -0.00056791 -0.11675 -5.0033E-05 428.5629515743124 37.972 0.37968 33.603 33.4 33.78 -4.3689 34 22 2 0 0 0 0.36533 1 22322 22322 23.34 5.4765 1 9929000 79503 7273 53218 54344 92500 92500 0.03695873454807952 YPLPHMCC 8 Unmodified _YPLPHMCC_ 0 0 0 ENST00000261401.7_1_12:109039947-109040256:-|nuORF ENST00000261401.7_1_12:109039947-109040256:-|nuORF ENST00000261401.7_1_12:109039947-109040256:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 482.2815246582031 2 482.197902 962.38125 0.92014 0.00044369 -0.41737 -0.00020125 0.50278 0.00024244 482.19773443648756 49.831 0.27219 49.438 49.296 49.568 -0.3923 33 13 3 0 0 0 8.7369 1 26776 26776 2.8892 0.31174 1 7630000 79504 11239 53219 54345 92501 92501 -0.10144504195329773 YPLPQASSSY 10 Unmodified _YPLPQASSSY_ 0 0 0 nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL nc|ENSG00000143889|Q8WVV9-5|HNRNPLL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.766845703125 2 556.766571 1111.51859 0.45864 0.00025536 0.013239 7.3713E-06 0.47188 0.00026273 556.7666953852909 47.157 0.48333 47.157 46.879 47.362 0 33 22 2 0 0 0 0.31022 1 25781 25781 26.884 12.302 1 2195100 79505 5564 53220 54346 92502 92502 -0.03270857518896264 YPLPSARAL 9 Unmodified _YPLPSARAL_ 0 0 0 ENSG00000164031|ENST00000442697|DNAJB14;ENST00000469942.1_1_4:100851605-100867728:-|nuORF;ENST00000474664.5_1_4:100844167-100867674:-|nuORF ENSG00000164031|ENST00000442697|DNAJB14 ENSG00000164031|ENST00000442697|DNAJB14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 494.7870483398438 2 494.284734 986.554916 1.1638 0.00057526 0.86453 0.00042733 2.0284 0.0010026 494.2850221674736 55.182 0.42861 49.261 49.031 49.459 -5.9211 55 26 3 0 0 0 0.15471 1 35033 35033 27.629 2.2295 1 33757000 79506 7116 53221 54347 92503 92503 0.0611006416845612 YPLQEVERF 9 Unmodified _YPLQEVERF_ 0 0 0 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8;nc|ENSG00000163607|Q8N3Z3-2|GTPBP8;ENSG00000163607|ENST00000383678|GTPBP8 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.8030395507812 2 590.803488 1179.59242 -0.21311 -0.00012591 1.6356 0.00096635 1.4225 0.00084044 591.3062470132506 55.229 0.53826 55.229 54.876 55.414 0 38 23 2 0 0 0 0.040683 2 30673 30554;30673 49.554 15.452 1 2718700 79507 7026 53222 54348 92504;92505 92505 0.009811106434199246 YPLQEVERF 9 Unmodified _YPLQEVERF_ 0 0 0 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8;nc|ENSG00000163607|Q8N3Z3-2|GTPBP8;ENSG00000163607|ENST00000383678|GTPBP8 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8 nc|ENSG00000163607|Q8N3Z3-3|GTPBP8 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 590.803488 1179.59242 1.0074 0.00059517 -0.80388 -0.00047494 0.20351 0.00012023 591.304567906798 61.45 0.35264 55.302 55.175 55.527 -6.1478 0.10559 -0.0014166 NaN 49.554 20 17 2 NaN NaN NaN NaN 0 NaN NaN 0 15546000 79508 7026 53222 54348 0.009811106434199246 YPLQISPVSSY 11 Unmodified _YPLQISPVSSY_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.3246459960938 2 627.324254 1252.63395 -0.083654 -5.2478E-05 0.92886 0.0005827 0.84521 0.00053022 627.3249395050435 69.202 0.31906 68.721 68.554 68.873 -0.48071 32 13 3 0 0 0 0.065225 1 37808 37808 47.594 27.18 1 2578500 79509 7748 53223 54349 92506 92506 0.01774246612103525 YPLQISPVSSY 11 Unmodified _YPLQISPVSSY_ 0 0 0 ENSG00000168310|ENST00000393593|IRF2;nc|ENSG00000168310|P14316-2|IRF2 ENSG00000168310|ENST00000393593|IRF2 ENSG00000168310|ENST00000393593|IRF2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 627.3239135742188 2 627.324254 1252.63395 0.0060646 3.8045E-06 -0.94003 -0.0005897 -0.93397 -0.0005859 627.3237006729137 76.881 0.25922 70.705 70.6 70.86 -6.1757 21 13 2 0 0 0 4.2801E-06 1 50290 50290 96.936 63.491 1 20737000 79510 7748 53223 54349 92507 92507 0.01774246612103525 YPLQSLLTGY 10 Unmodified _YPLQSLLTGY_ 0 0 0 ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL ENSG00000143476|ENST00000366991|DTL MULTI-SECPEP AL20221201_MKP_PDAC_01 4 578.30322265625 2 577.808239 1153.60193 0.28892 0.00016694 -1.2781 -0.00073847 -0.98914 -0.00057153 577.8078742990671 98.778 0.42653 92.602 92.352 92.778 -6.1757 44 32 2 0 0 0 0.14371 1 65405 65405 36.506 8.8774 1 59491000 79511 5517 53224 54350 92508 92508 0.03126878928969745 YPLRGSSIF 9 Unmodified _YPLRGSSIF_ 0 0 0 ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP ENSG00000163286|ENST00000295453|ALPG ENSG00000163286|ENST00000295453|ALPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.2821655273438 2 520.282192 1038.54983 -0.20092 -0.00010453 -0.15125 -7.8695E-05 -0.35217 -0.00018323 520.28219938827 53.941 0.50124 53.874 53.661 54.162 -0.066936 59 25 3 0 0 0 0.062454 3 29210 29210;29318;29424 41.956 34.932 1 6589000 79512 6971 53225 54351 92509;92510;92511 92509 0.032097603058673485 YPLRGSSIF 9 Unmodified _YPLRGSSIF_ 0 0 0 ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP ENSG00000163286|ENST00000295453|ALPG ENSG00000163286|ENST00000295453|ALPG MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.282192 1038.54983 0.11322 5.8906E-05 2.3023 0.0011978 2.4155 0.0012567 520.2834125749766 54.231 0.2145 53.765 53.646 53.861 -0.46664 -0.054702 0.0023646 NaN 41.956 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1256400 79513 6971 53225 54351 0.032097603058673485 YPLRGSSIFGL 11 Unmodified _YPLRGSSIFGL_ 0 0 0 ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP ENSG00000163286|ENST00000295453|ALPG ENSG00000163286|ENST00000295453|ALPG MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3355712890625 2 605.334956 1208.65536 0.23267 0.00014084 0.79802 0.00048307 1.0307 0.00062391 605.335640545243 73.56 0.46704 73.604 73.314 73.781 0.043976 52 20 4 0 0 0 0.19143 2 40551 40448;40551 46.022 46.022 1 2913300 79514 6971 53226 54352 92512;92513 92513 0.059376764314720276 YPLRGSSIFGL 11 Unmodified _YPLRGSSIFGL_ 0 0 0 ENSG00000163286|ENST00000295453|ALPG;ENSG00000163283|ENST00000392027|ALPP ENSG00000163286|ENST00000295453|ALPG ENSG00000163286|ENST00000295453|ALPG MSMS AL20221201_MKP_PDAC_01 4 605.3348388671875 2 605.334956 1208.65536 NaN NaN NaN NaN NaN NaN NaN 92.95 1 86.775 86.275 87.275 -6.1757 0 0 0 0.3742 1 61492 61492 35.612 8.7286 1 79515 6971 53226 54352 92514 92514 0.059376764314720276 YPLRNEYI 8 Unmodified _YPLRNEYI_ 0 0 0 nc|ENSG00000169402|B2RC85-2|RSPH10B2;ENSG00000169402|ENST00000404077|RSPH10B2;ENSG00000155026|ENST00000404406|RSPH10B nc|ENSG00000169402|B2RC85-2|RSPH10B2 nc|ENSG00000169402|B2RC85-2|RSPH10B2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7782592773438 2 534.279649 1066.54475 0.58176 0.00031082 0.35852 0.00019155 0.94028 0.00050237 534.2799075380111 46.026 0.53839 41.071 40.745 41.284 -4.9549 106 35 4 0 0 0 0.72953 1 28162 28162 14.582 0 1 184610000 79516 6362 53227 54353 92515 92515 0.014134564432424668 YPLSFPYL 8 Unmodified _YPLSFPYL_ 0 0 0 REV__ENSG00000105364|ENST00000253099|MRPL4 REV__ENSG00000105364|ENST00000253099|MRPL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.2630004882812 2 500.262936 998.51132 NaN NaN NaN NaN NaN NaN NaN 18.237 1 18.25 17.75 18.75 0.013865 0 0 0 0.97444 1 9129 9129 0.79363 0 1 + 79517 18418 53228 54354 92516 92516 0.012004546713342279 YPLSHFVGY 9 Unmodified _YPLSHFVGY_ 0 0 0 ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN ENSG00000197563|ENST00000640252|PIGN MSMS AL20221201_MKP_PDAC_01 4 541.7713623046875 2 541.768917 1081.52328 NaN NaN NaN NaN NaN NaN NaN 38.921 1 34.47 33.97 34.97 -4.4509 0 0 0 0.46757 1 23030 23030 16.942 2.104 1 79518 9970 53229 54355 92517 92517 -0.014219285854778718 YPLSLALHF 9 Unmodified _YPLSLALHF_ 0 0 0 ENSG00000172244|ENST00000306862|C5orf34;ENST00000514462.1_1_5:43505848-43515051:-|nuORF ENSG00000172244|ENST00000306862|C5orf34 ENSG00000172244|ENST00000306862|C5orf34 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 530.284423828125 2 530.794935 1059.57532 1.5297 0.00081193 2.9837 0.0015837 4.5133 0.0023957 530.7964810264455 98.309 0.28226 92.133 91.908 92.19 -6.1757 37 18 3 0 0 0 0.18521 1 65126 65126 16.942 3.4344 1 59981000 79519 8195 53230 54356 92518 92518 0.04791234828257984 YPLSNEECTY 10 Unmodified _YPLSNEECTY_ 0 0 0 REV__nc|ENSG00000010438|P35030|PRSS3 REV__nc|ENSG00000010438|P35030|PRSS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.75439453125 2 609.752804 1217.49105 NaN NaN NaN NaN NaN NaN NaN 72.492 1 72.492 71.992 72.992 0 0 0 0 0.95103 1 40363 40363 5.7319 0.43497 1 + 79520 29482 53231 54357 92519 92519 -0.10899128841447236 YPLSNEECTY 10 Unmodified _YPLSNEECTY_ 0 0 0 REV__nc|ENSG00000010438|P35030|PRSS3 REV__nc|ENSG00000010438|P35030|PRSS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.7525024414062 2 609.752804 1217.49105 0.70571 0.00043031 -0.82349 -0.00050213 -0.11779 -7.182E-05 609.7524486825491 72.937 0.3757 72.461 72.341 72.717 -0.47588 25 16 2 0 0 0 0.63399 1 39890 39890 9.3831 1.2276 1 764410 + 79521 29482 53231 54357 92520 92520 -0.10899128841447236 YPLSSLMY 8 Unmodified _YPLSSLMY_ 0 0 0 ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A ENSG00000198780|ENST00000687041|FAM169A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 487.2401123046875 2 487.238604 972.462655 NaN NaN NaN NaN NaN NaN NaN 24.373 1 24.373 23.873 24.873 0 0 0 0 0.97444 1 12455 12455 2.8892 0 1 79522 10148 53232 54358 92521 92521 -0.02467781960069715 YPLTCKVVY 9 Carbamidomethyl (C) _YPLTC(Carbamidomethyl (C))KVVY_ YPLTC(1)KVVY YPLTC(50)KVVY 0 1 0 ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;nc|ENSG00000137478|O94868-3|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8011474609375 2 571.79936 1141.58417 0.78429 0.00044845 0.058076 3.3208E-05 0.84236 0.00048166 571.7996824296041 46.8 0.31488 46.463 46.327 46.642 -0.33664 24 15 2 0 0 0 0.040683 1 25074 25074 49.554 26.818 1 4914700 79523 4936 53233 54359 92522 92522 511 0.01903840402451351 YPLTCKVVY 9 Carbamidomethyl (C) _YPLTC(Carbamidomethyl (C))KVVY_ YPLTC(1)KVVY YPLTC(59)KVVY 0 1 0 ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;nc|ENSG00000137478|O94868-3|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7997436523438 2 571.79936 1141.58417 0.83161 0.00047551 -0.3722 -0.00021283 0.45941 0.00026269 571.7990537669159 52.349 0.3331 46.615 46.484 46.817 -5.7345 34 18 2 0 0 0 0.024189 2 33126 33003;33126 59.368 29.235 1 47526000 79524 4936 53233 54359 92523;92524 92524 511 0.01903840402451351 YPLTNYTF 8 Unmodified _YPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MULTI-MSMS AL20221201_MKP_PDAC_01 4 509.7479248046875 2 509.74765 1017.48075 0.10982 5.5982E-05 0.80509 0.00041039 0.91491 0.00046638 509.7481083906264 99.851 0.16687 93.676 93.574 93.74 -6.1757 28 12 3 0 0 0 0.64853 1 66599 66599 21.747 2.3076 1 78966000 79525 7563 53234 54360 92525 92525 -0.02729323713708709 YPLTNYTF 8 Unmodified _YPLTNYTF_ 0 0 0 ENSG00000167005|ENST00000300291|NUDT21;ENST00000567110.1_1_16:56481699-56485159:-|nuORF ENSG00000167005|ENST00000300291|NUDT21 ENSG00000167005|ENST00000300291|NUDT21 MSMS AL20221201_MKP_PDAC_01 4 509.7482604980469 2 509.74765 1017.48075 NaN NaN NaN NaN NaN NaN NaN 74.829 1 68.654 68.154 69.154 -6.1757 0 0 0 0.4637 1 48929 48929 44.407 14.182 1 79526 7563 53234 54360 92526 92526 -0.02729323713708709 YPLTPEANF 9 Unmodified _YPLTPEANF_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000493740.1_1_3:183857994-183858625:+|nuORF;ENST00000479833.1_1_3:183855956-183859823:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2586669921875 2 526.258382 1050.50221 0.34477 0.00018144 0.19973 0.00010511 0.5445 0.00028655 526.2585945759007 61.953 0.41414 61.953 61.728 62.143 0 31 17 3 0 0 0 0.052168 1 34523 34523 44.407 26.272 1 1410600 79527 5671 53235 54361 92527 92527 -0.021019386850184674 YPLTPEANF 9 Unmodified _YPLTPEANF_ 0 0 0 ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000493740.1_1_3:183857994-183858625:+|nuORF;ENST00000479833.1_1_3:183855956-183859823:+|nuORF ENSG00000145191|ENST00000648915|EIF2B5 ENSG00000145191|ENST00000648915|EIF2B5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 526.2825927734375 2 526.258382 1050.50221 0.71981 0.00037881 0.42323 0.00022273 1.143 0.00060154 526.259218628339 69.699 0.23822 63.524 63.41 63.648 -6.1757 12 12 2 0 0 0 0.0011459 1 45553 45553 100.37 79.5 1 9909500 79528 5671 53235 54361 92528 92528 -0.021019386850184674 YPLTQLVVVGF 11 Unmodified _YPLTQLVVVGF_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.35888671875 2 618.355357 1234.69616 2.6157 0.0016174 2.1905 0.0013545 4.8062 0.0029719 618.3571644721072 99.995 0.13712 99.959 99.88 100.02 -0.036301 11 4 4 0 0 0 0.25276 1 55554 55554 43.772 24.41 1 4211000 79529 5248 53236 54362 92529 92529 0.08820017751077103 YPLTQLVVVGF 11 Unmodified _YPLTQLVVVGF_ 0 0 0 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3541870117188 2 618.355357 1234.69616 1.1588 0.00071653 -1.2343 -0.00076327 -0.075584 -4.6738E-05 618.3543089048675 101.06 0.12459 94.889 94.815 94.939 -6.1757 12 5 3 0 0 0 0.038129 1 67737 67737 66.457 37.375 1 23339000 79530 5248 53236 54362 92530 92530 0.08820017751077103 YPLTSPPTSY 10 Unmodified _YPLTSPPTSY_ 0 0 0 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 ENSG00000180182|ENST00000324817|MED14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.2771606445312 2 563.276772 1124.53899 1.6026 0.00090268 0.17673 9.9549E-05 1.7793 0.0010022 563.2768674330068 58.944 0.69447 52.869 52.439 53.133 -6.0745 83 38 3 0 0 0 0.0044003 2 37773 37773;37914 100.37 68.066 1 54189000 79531 8887 53237 54363 92531;92532 92531 -0.01829686859082358 YPLTTLRF 8 Unmodified _YPLTTLRF_ 0 0 0 ENSG00000131746|ENST00000254051|TNS4;ENST00000394072.7_1_17:38633842-38637100:-|nuORF ENSG00000131746|ENST00000254051|TNS4 ENSG00000131746|ENST00000254051|TNS4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7894287109375 2 505.78711 1009.55967 1.143 0.00057814 0.60804 0.00030754 1.7511 0.00088567 505.78715621836665 66.222 0.29247 66.231 66.125 66.417 0.0095596 24 14 2 0 0 0 0.52622 1 36360 36360 32.305 3.8186 1 3888800 79532 4346 53238 54364 92533 92533 0.055269483112283524 YPLVGHAL 8 Unmodified _YPLVGHAL_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.2478637695312 2 435.247621 868.480688 1.3651 0.00059418 -0.30878 -0.0001344 1.0564 0.00045978 435.24755582610004 54.233 0.48913 48.368 48.083 48.572 -5.8653 43 28 2 0 0 0 0.2373 2 34422 34277;34422 64.081 35.908 1 10454000 79533 5700 53239 54365 92534;92535 92535 0.04118721076940801 YPLVGHAL 8 Unmodified _YPLVGHAL_ 0 0 0 ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 ENSG00000145476|ENST00000378802|CYP4V2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 435.247621 868.480688 0.25656 0.00011167 0.65522 0.00028518 0.91178 0.00039685 435.24773217666086 48.727 0.26042 48.355 48.297 48.558 -0.37172 -0.0065154 0.00054275 NaN 64.081 19 14 2 NaN NaN NaN NaN 0 NaN NaN 0 2589000 79534 5700 53239 54365 0.04118721076940801 YPLVHVVCQSY 11 Carbamidomethyl (C) _YPLVHVVC(Carbamidomethyl (C))QSY_ YPLVHVVC(1)QSY YPLVHVVC(140)QSY 0 1 0 nc|ENSG00000168918|Q92835-3|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENSG00000168918|ENST00000445964|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D nc|ENSG00000168918|Q92835-3|INPP5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.8373413085938 2 682.837005 1363.65946 1.8686 0.001276 -0.22351 -0.00015262 1.6451 0.0011233 682.8365423739738 58.887 0.40779 52.812 52.565 52.973 -6.0745 39 22 2 0 0 0 6.0288E-16 1 37725 37725 142.08 113 1 11466000 79535 7815 53240 54366 92536 92536 759 -0.007826021371101888 YPLWCLLFI 9 Unmodified _YPLWCLLFI_ 0 0 0 REV__ENSG00000163464|ENST00000295683|CXCR1 REV__ENSG00000163464|ENST00000295683|CXCR1 MSMS AL20221201_MKP_PDAC_01 4 584.3170166015625 2 584.317189 1166.61982 NaN NaN NaN NaN NaN NaN NaN 76.883 1 70.708 70.208 71.208 -6.1757 0 0 0 0.70111 1 50286 50286 9.3474 1.1919 1 + 79536 21767 53241 54367 92537 92537 0.04317922650102446 YPLWVSPRL 9 Unmodified _YPLWVSPRL_ 0 0 0 ENST00000492715.1_1_X:48456623-48456752:+|nuORF ENST00000492715.1_1_X:48456623-48456752:+|nuORF ENST00000492715.1_1_X:48456623-48456752:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5505981445312 3 377.550082 1129.62842 1.0457 0.0003948 -0.069947 -2.6408E-05 0.97574 0.00036839 377.55007752885797 26.657 0.30385 23.706 23.597 23.901 -2.9511 39 15 3 0 0 0 0.2324 1 14693 14693 20.415 8.1739 1 16486000 79537 14296 53242 54368 92538 92538 0.06878612610944401 YPLYYKKF 8 Unmodified _YPLYYKKF_ 0 0 0 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 REV__nc|ENSG00000174373|Q6GYQ0|RALGAPA1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.8528442382812 2 561.305136 1120.59572 0.73539 0.00041278 3.5025 0.001966 4.2379 0.0023788 561.3064941562851 49.281 0.26822 48.909 48.755 49.024 -0.37172 19 9 3 0 0 0 8.7369 1 26457 26457 11.114 0 1 956620 + 79538 22790 53243 54369 92539 92539 0.040244054880758995 YPMDLGGRNF 10 Oxidation (M) _YPM(Oxidation (M))DLGGRNF_ YPM(1)DLGGRNF YPM(44)DLGGRNF 0 0 1 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 593.2700805664062 2 593.271498 1184.52844 -0.17448 -0.00010351 -1.0707 -0.00063524 -1.2452 -0.00073875 593.2712411715685 40.445 0.21425 40.445 40.295 40.51 0 21 10 3 0 0 0 0.11824 1 21704 21704 43.772 27.925 1 4459300 79539 4891 53244 54370 92540 92540 888 -0.056439927851897664 YPMDLGGRNF 10 Oxidation (M) _YPM(Oxidation (M))DLGGRNF_ YPM(1)DLGGRNF YPM(52)DLGGRNF 0 0 1 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 593.7734985351562 2 593.271498 1184.52844 0.52584 0.00031197 -1.1327 -0.00067198 -0.60684 -0.00036002 593.2710305012226 40.837 0.24042 40.534 40.418 40.659 -0.30304 25 11 3 0 0 0 0.077785 1 21584 21584 51.63 29.883 1 7757100 79540 4891 53244 54370 92541 92541 888 -0.056439927851897664 YPMDLGGRNF 10 Unmodified _YPMDLGGRNF_ 0 0 0 ENSG00000136986|ENST00000259512|DERL1;nc|ENSG00000136986|Q9BUN8-2|DERL1;ENST00000524119.1_1_8:124031433-124042893:-|nuORF ENSG00000136986|ENST00000259512|DERL1 ENSG00000136986|ENST00000259512|DERL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.27294921875 2 585.274041 1168.53353 1.2741 0.0007457 -0.46463 -0.00027194 0.80947 0.00047376 585.2739673699795 58.455 0.40234 52.38 52.145 52.547 -6.0745 33 19 2 0 0 0 0.016642 1 37412 37412 78.728 45.942 1 20430000 79541 4891 53244 54371 92542 92542 -0.04399688922558198 YPMLNNEY 8 Unmodified _YPMLNNEY_ 0 0 0 REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L REV__nc|ENSG00000138767|Q96LI5-2|CNOT6L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2290649414062 2 522.228768 1042.44298 0.35029 0.00018293 2.6462 0.0013819 2.9965 0.0015648 522.2300671909898 70.949 0.50787 70.471 70.308 70.816 -0.47735 27 22 2 0 0 0 0.74163 1 38845 38845 13.508 0.97634 1 1350000 + 79542 20362 53245 54372 92543 92543 -0.0765415797084188 YPMPIGHFWR 10 Unmodified _YPMPIGHFWR_ 0 0 0 ENSG00000102996|ENST00000219271|MMP15 ENSG00000102996|ENST00000219271|MMP15 ENSG00000102996|ENST00000219271|MMP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 435.2188415527344 3 435.218337 1302.63318 -0.38784 -0.00016879 1.1936 0.00051947 0.80576 0.00035068 435.2192579352524 35.274 0.46105 35.051 34.784 35.245 -0.2224 53 20 4 0 0 0 0.68719 1 18523 18523 2.086 0.17963 1 4527000 79543 2090 53246 54373 92544 92544 -0.006028265179566006 YPMPTAKEHY 10 Unmodified _YPMPTAKEHY_ 0 0 0 nc|ENSG00000132466|O75179-4|ANKRD17;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 nc|ENSG00000132466|O75179-4|ANKRD17 MSMS AL20221201_MKP_PDAC_01 4 412.8623657226562 3 412.862108 1235.56449 NaN NaN NaN NaN NaN NaN NaN 32.942 1 29.085 28.585 29.585 -3.8562 0 0 0 0.78727 1 18839 18839 12.856 7.9589 1 79544 4410 53247 54374 92545 92545 -0.043865356082960716 YPMPTGYSQ 9 Unmodified _YPMPTGYSQ_ 0 0 0 ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF ENSG00000108654|ENST00000225792|DDX5 ENSG00000108654|ENST00000225792|DDX5 MSMS AL20221201_MKP_PDAC_01 4 522.2293090820312 2 522.228768 1042.44298 NaN NaN NaN NaN NaN NaN NaN 48.487 1 43.09 42.59 43.59 -5.3961 0 0 0 0.04157 1 30210 30210 61.357 29.052 1 79545 2594 53248 54375 92546 92546 -0.07654157970819142 YPMSGCVMIY 10 Unmodified _YPMSGCVMIY_ 0 0 0 REV__nc|ENSG00000206203|Q96PF2|TSSK2 REV__nc|ENSG00000206203|Q96PF2|TSSK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5029907226562 3 388.502646 1162.48611 0.75358 0.00029277 -0.78087 -0.00030337 -0.02729 -1.0602E-05 388.50238768479653 75.403 0.51807 74.926 74.63 75.148 -0.47713 64 27 3 0 0 0 0.67413 1 41192 41192 5.7834 2.1964 1 5183500 + 79546 24265 53249 54376 92547 92547 -0.08863427509413668 YPNAKVELV 9 Unmodified _YPNAKVELV_ 0 0 0 ENSG00000131435|ENST00000253754|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7904663085938 2 516.78985 1031.56515 -0.23786 -0.00012293 -0.24452 -0.00012637 -0.48239 -0.00024929 517.2911984845674 44.896 0.16774 44.896 44.808 44.976 0 14 8 2 0 0 0 0.015688 1 24444 24444 67.838 24.066 1 10294000 79547 4324 53250 54377 92548 92548 0.05062627103052364 YPNAKVELV 9 Unmodified _YPNAKVELV_ 0 0 0 ENSG00000131435|ENST00000253754|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 ENSG00000131435|ENST00000253754|PDLIM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7914428710938 2 516.78985 1031.56515 1.063 0.00054936 -2.7932 -0.0014435 -1.7302 -0.00089415 516.7894431358204 50.608 0.24869 45.068 44.9 45.149 -5.5391 30 15 3 0 0 0 0.037253 1 31795 31795 51.415 20.147 1 26649000 79548 4324 53250 54377 92549 92549 0.05062627103052364 YPNEDFYF 8 Unmodified _YPNEDFYF_ 0 0 0 REV__ENST00000437270.1_1_9:140535772-140535991:-|nuORF REV__ENST00000437270.1_1_9:140535772-140535991:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.7283325195312 2 547.726915 1093.43928 NaN NaN NaN NaN NaN NaN NaN 66.372 1 66.372 65.872 66.872 0 0 0 0 0.97444 1 37020 37020 2.8892 0.58649 1 + 79549 19187 53251 54378 92550 92550 -0.10370504473053188 YPNGLQVNF 9 Unmodified _YPNGLQVNF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.2644653320312 2 526.263999 1050.51345 NaN NaN NaN NaN NaN NaN NaN 66.728 1 66.728 66.228 67.228 0 0 0 0 0.50124 1 37215 37215 15.847 2.8047 1 79550 3293 53252 54379 92551 92551 -0.0097911659086094 YPNGLQVNF 9 Unmodified _YPNGLQVNF_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;ENST00000526194.5_1_1:21560049-21616919:-|nuORF nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2631225585938 2 526.263999 1050.51345 0.3162 0.0001664 -0.54177 -0.00028511 -0.22557 -0.00011871 526.2637644270642 67.212 0.73557 66.73 66.295 67.031 -0.48218 78 33 3 0 0 0 0.038285 2 36694 36694;36802 50.855 36.017 1 8331100 79551 3293 53252 54379 92552;92553 92552 -0.0097911659086094 YPNGPDYQL 9 Unmodified _YPNGPDYQL_ 0 0 0 ENSG00000120075|ENST00000239151|HOXB5;ENSG00000106004|ENST00000222726|HOXA5 ENSG00000120075|ENST00000239151|HOXB5 ENSG00000120075|ENST00000239151|HOXB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.745849609375 2 533.745639 1065.47673 NaN NaN NaN NaN NaN NaN NaN 48.95 1 48.95 48.45 49.45 0 0 0 0 0.22437 1 26897 26897 29.082 0.90835 1 79552 2389 53253 54380 92554 92554 -0.05339413207434518 YPNGPDYQL 9 Unmodified _YPNGPDYQL_ 0 0 0 ENSG00000120075|ENST00000239151|HOXB5;ENSG00000106004|ENST00000222726|HOXA5 ENSG00000120075|ENST00000239151|HOXB5 ENSG00000120075|ENST00000239151|HOXB5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7462158203125 2 533.745639 1065.47673 0.31659 0.00016898 0.8124 0.00043362 1.129 0.00060259 533.7464203737553 56.233 0.099014 50.256 50.221 50.32 -5.9769 8 5 2 0 0 0 0.25681 1 35902 35902 19.257 0 1 13854000 79553 2389 53253 54380 92555 92555 -0.05339413207434518 YPNGVCTVY 9 Carbamidomethyl (C) _YPNGVC(Carbamidomethyl (C))TVY_ YPNGVC(1)TVY YPNGVC(64)TVY 0 1 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000464669.1_1_7:116502674-116546397:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 536.7424926757812 2 536.742042 1071.46953 0.00018723 1.005E-07 0.028354 1.5219E-05 0.028542 1.5319E-05 536.7421779332528 44.341 0.34084 44.341 44.171 44.512 0 26 17 2 0 0 0 0.019303 1 24175 24175 64.236 34.012 1 14299000 79554 10189 53254 54381 92556 92556 921 -0.06334469079524752 YPNGVCTVY 9 Carbamidomethyl (C) _YPNGVC(Carbamidomethyl (C))TVY_ YPNGVC(1)TVY YPNGVC(42)TVY 0 1 0 ENST00000464669.1_1_7:116502674-116546397:+|nuORF;ENSG00000198898|ENST00000361183|CAPZA2 ENST00000464669.1_1_7:116502674-116546397:+|nuORF ENST00000464669.1_1_7:116502674-116546397:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.7434692382812 2 536.742042 1071.46953 0.62406 0.00033496 -1.037 -0.00055658 -0.4129 -0.00022162 536.7417093105128 51.512 0.41448 45.863 45.69 46.104 -5.649 57 25 3 0 0 0 0.06187 1 32462 32462 42.095 23.96 1 99020000 79555 10189 53254 54381 92557 92557 921 -0.06334469079524752 YPNGVVVHY 9 Unmodified _YPNGVVVHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.26611328125 2 524.266542 1046.51853 -0.061788 -3.2393E-05 -0.61385 -0.00032182 -0.67564 -0.00035422 524.2659323449684 41.49 0.40726 41.49 41.344 41.751 0 37 20 3 0 0 0 0.0077963 1 22353 22353 109.63 71.478 1 32047000 79556 7544 53255 54382 92558 92558 -0.0028681272824542248 YPNGVVVHY 9 Unmodified _YPNGVVVHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.267333984375 2 524.266542 1046.51853 -0.39221 -0.00020562 0.34374 0.00018021 -0.04847 -2.5411E-05 524.2666922309365 41.806 0.28827 41.5 41.375 41.663 -0.30682 26 13 3 0 0 0 0.0012811 1 22157 22157 137.59 95.491 1 14663000 79557 7544 53255 54382 92559 92559 -0.0028681272824542248 YPNGVVVHY 9 Unmodified _YPNGVVVHY_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.26708984375 2 524.266542 1046.51853 0.55893 0.00029303 0.33035 0.00017319 0.88928 0.00046622 524.2663930441834 46.792 0.36621 41.712 41.566 41.933 -5.0805 168 63 4 0 0 0 0.0025195 2 28971 28971;29102 129.2 91.049 1 90949000 79558 7544 53255 54382 92560;92561 92560 -0.0028681272824542248 YPNGVVVHYF 10 Unmodified _YPNGVVVHYF_ 0 0 0 ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000564994.5_1_15:42452954-42453724:-|nuORF;ENST00000562258.5_1_15:42452954-42456706:-|nuORF ENSG00000166887|ENST00000318006|VPS39 ENSG00000166887|ENST00000318006|VPS39 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.8001708984375 2 597.800749 1193.58694 0.35493 0.00021218 1.6195 0.00096812 1.9744 0.0011803 597.8009380361669 59.122 0.12997 58.632 58.535 58.665 -0.49079 7 5 2 0 0 0 0.25327 1 32174 32174 30.225 17.693 1 892780 79559 7544 53256 54383 92562 92562 -0.0021056814839539584 YPNIDKDHAF 10 Unmodified _YPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.2918090820312 2 610.290745 1218.56694 0.23253 0.00014191 -0.28131 -0.00017168 -0.048775 -2.9767E-05 610.2906009308674 36.044 0.30913 36.044 35.858 36.167 0 46 15 4 0 0 0 0.0036758 1 19063 19063 96.936 41.433 1 21023000 79560 3121 53257 54384 92563 92563 -0.0336036387900549 YPNIDKDHAF 10 Unmodified _YPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.1978759765625 3 407.196256 1218.56694 -0.48448 -0.00019728 1.5184 0.00061828 1.0339 0.000421 407.1971117324265 36.352 0.2875 36.102 35.906 36.193 -0.2497 31 12 3 0 0 0 0.22922 1 19041 19041 31.636 21.872 1 5286200 79561 3121 53257 54384 92564 92564 -0.0336036387900549 YPNIDKDHAF 10 Unmodified _YPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 407.1967468261719 3 407.196256 1218.56694 1.1442 0.00046593 -0.025938 -1.0562E-05 1.1183 0.00045537 407.1962615758414 40.75 0.47958 36.22 35.952 36.432 -4.5294 96 29 4 0 0 0 0.053349 3 24253 24253;24388;24521 57.108 35.308 1 112480000 79562 3121 53257 54384 92565;92566;92567 92565 -0.0336036387900549 YPNIDKDHAF 10 Unmodified _YPNIDKDHAF_ 0 0 0 ENSG00000115415|ENST00000361099|STAT1;nc|ENSG00000115415|P42224-2|STAT1 ENSG00000115415|ENST00000361099|STAT1 ENSG00000115415|ENST00000361099|STAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.292724609375 2 610.290745 1218.56694 0.9303 0.00056775 0.19414 0.00011848 1.1244 0.00068624 610.2911310076471 40.735 0.41637 36.206 36.001 36.418 -4.5294 60 25 3 0 0 0 6.1437E-08 2 24274 24274;24401 128.93 77.303 1 20680000 79563 3121 53257 54384 92568;92569 92568 -0.0336036387900549 YPNIGGIIRY 10 Unmodified _YPNIGGIIRY_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 583.3270263671875 2 583.321848 1164.62914 NaN NaN NaN NaN NaN NaN NaN 65.154 1 64.67 64.17 65.17 -0.48428 0 0 0 0.55039 1 35554 35554 27.629 16.805 1 79564 8653 53258 54385 92570 92570 0.053414072599935025 YPNIGGIIRY 10 Unmodified _YPNIGGIIRY_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.322265625 2 583.321848 1164.62914 1.1627 0.00067823 0.14676 8.5606E-05 1.3095 0.00076383 583.3217698401348 64.684 0.85198 64.684 64.204 65.056 1.5259E-05 104 42 3 0 0 0 0.031932 3 35353 35242;35353;35456 88.954 57.191 1 12713000 79565 8653 53258 54385 92571;92572;92573 92572 0.053414072599935025 YPNIGGIIRY 10 Unmodified _YPNIGGIIRY_ 0 0 0 nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF nc|ENSG00000177058|Q8NBW4-4|SLC38A9 nc|ENSG00000177058|Q8NBW4-4|SLC38A9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 583.3239135742188 2 583.321848 1164.62914 0.81533 0.0004756 0.6445 0.00037595 1.4598 0.00085155 583.3222259323586 73.538 1.0344 67.362 66.909 67.944 -6.1757 91 50 2 0 0 0 0.0065755 4 48163 47930;48053;48163;48278 111.29 83.658 1 22113000 79566 8653 53258 54385 92574;92575;92576;92577 92576 0.053414072599935025 YPNKPPTVRF 10 Unmodified _YPNKPPTVRF_ 0 0 0 ENSG00000077721|ENST00000371558|UBE2A;ENSG00000119048|ENST00000265339|UBE2B ENSG00000077721|ENST00000371558|UBE2A;ENSG00000119048|ENST00000265339|UBE2B ENSG00000077721|ENST00000371558|UBE2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8924865722656 3 406.892507 1217.65569 -0.10603 -4.3145E-05 -0.64734 -0.0002634 -0.75338 -0.00030654 406.89225202886234 38.556 0.45828 38.573 38.265 38.724 0.01704 34 21 2 0 0 0 0.37616 1 20456 20456 23.016 17.232 1 3159800 79567 1226;3412 53259 54386 92578 92578 0.05557096151301266 YPNKPPTVRF 10 Unmodified _YPNKPPTVRF_ 0 0 0 ENSG00000077721|ENST00000371558|UBE2A;ENSG00000119048|ENST00000265339|UBE2B ENSG00000077721|ENST00000371558|UBE2A;ENSG00000119048|ENST00000265339|UBE2B ENSG00000077721|ENST00000371558|UBE2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.8938293457031 3 406.892507 1217.65569 0.99178 0.00040355 0.064077 2.6072E-05 1.0559 0.00042962 406.8925825971531 43.001 0.43275 38.316 37.982 38.414 -4.6846 41 27 2 0 0 0 0.10874 2 25921 25921;26088 44.945 25.703 1 8070100 79568 1226;3412 53259 54386 92579;92580 92579 0.05557096151301266 YPNLSISFR 9 Unmodified _YPNLSISFR_ 0 0 0 ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 366.1982116699219 3 366.197708 1095.57129 -0.16319 -5.9759E-05 0.37859 0.00013864 0.2154 7.888E-05 366.1978539910337 31.043 0.28262 31.043 30.912 31.194 0 40 13 4 0 0 0 0.45045 1 16127 16127 6.6304 1.2277 1 20644000 79569 15287 53260 54387 92581 92581 0.027331453345595946 YPNLSISFR 9 Unmodified _YPNLSISFR_ 0 0 0 ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 366.197708 1095.57129 -0.16319 -5.9759E-05 0.37859 0.00013864 0.2154 7.888E-05 366.1978539910337 31.043 0.28262 31.043 30.912 31.194 0 0.18444 0.00039884 NaN 6.6304 40 13 4 NaN NaN NaN NaN 0 NaN NaN 0 20644000 79570 15287 53260 54387 0.027331453345595946 YPNLSISFR 9 Unmodified _YPNLSISFR_ 0 0 0 ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF ENST00000559040.1_1_15:49448112-49518881:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 366.197708 1095.57129 -0.19861 -7.2732E-05 0.29392 0.00010763 0.095302 3.49E-05 366.197926958179 30.833 0.23359 30.864 30.737 30.97 0.030104 0.0049773 0.00030582 NaN 6.6304 19 9 3 NaN NaN NaN NaN 0 NaN NaN 0 2361200 79571 15287 53260 54387 0.027331453345595946 YPNNKAAKTQL 11 Unmodified _YPNNKAAKTQL_ 0 0 0 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 ENSG00000004478|ENST00000001008|FKBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.5650329589844 3 416.562938 1246.66699 1.3866 0.0005776 1.8179 0.00075728 3.2045 0.0013349 416.56367701827054 20.094 0.28055 17.438 17.239 17.519 -2.6564 38 17 3 0 0 0 0.55668 1 10638 10638 13.535 5.2485 1 5830900 79572 275 53261 54388 92582 92582 0.05351873454787892 YPNPAVSY 8 Unmodified _YPNPAVSY_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000551414.1_1_14:31762513-31765297:-|nuORF nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20221201_MKP_PDAC_01 4 455.7206726074219 2 455.718893 909.423233 1.0722 0.00048861 0.45974 0.00020951 1.5319 0.00069812 455.71905559698615 50.086 0.60728 44.547 44.201 44.808 -5.5391 95 38 3 0 0 0 0.37649 1 31160 31160 46.921 0 1 57685000 79573 4143 53262 54389 92583 92583 -0.03510165919283281 YPNPLPTGF 9 Unmodified _YPNPLPTGF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.2561340332031 2 503.255643 1004.49673 -0.010067 -5.0661E-06 1.0423 0.00052453 1.0322 0.00051947 503.25592590965437 70.892 0.66307 70.415 70.104 70.767 -0.47736 93 33 4 0 0 0 0.012148 2 38716 38716;38827 74.423 54.984 1 20417000 79574 5669 53263 54390 92584;92585 92584 -0.005336174767990087 YPNPLPTGF 9 Unmodified _YPNPLPTGF_ 0 0 0 ENSG00000145113|ENST00000463781|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-12|MUC4;nc|ENSG00000145113|Q99102-13|MUC4 ENSG00000145113|ENST00000463781|MUC4 ENSG00000145113|ENST00000463781|MUC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 503.2559204101562 2 503.255643 1004.49673 0.70822 0.00035642 1.0889 0.00054801 1.7972 0.00090443 503.2558886822408 70.324 0.56828 70.36 70.173 70.741 0.035515 61 26 3 0 0 0 0.019303 1 38667 38667 64.236 44.797 1 5692900 79575 5669 53263 54390 92586 92586 -0.005336174767990087 YPNPTRPG 8 Unmodified _YPNPTRPG_ 0 0 0 REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF REV__ENST00000535413.1_1_12:121134228-121138519:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 451.2303161621094 2 451.229959 900.445365 1.2157 0.00054854 0.66647 0.00030073 1.8821 0.00084927 451.23019827824635 57.92 0.41644 57.854 57.554 57.97 -0.066036 43 20 3 0 0 0 0.80624 1 31436 31436 2.8892 0 1 8809500 + 79576 28527 53264 54391 92587 92587 -0.008839414508543086 YPNPYSKHVL 10 Unmodified _YPNPYSKHVL_ 0 0 0 ENST00000511309.5_1_5:176730986-176733129:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1 ENST00000511309.5_1_5:176730986-176733129:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5486755371094 3 406.548629 1216.62406 -0.2572 -0.00010457 -0.20582 -8.3674E-05 -0.46302 -0.00018824 406.88285484689584 34.618 0.59031 34.426 34.152 34.742 -0.19131 39 26 2 0 0 0 0.28721 1 18136 18136 28.234 22.45 1 3233700 79577 7853 53265 54392 92588 92588 0.02441103397381994 YPNPYSKHVL 10 Unmodified _YPNPYSKHVL_ 0 0 0 ENST00000511309.5_1_5:176730986-176733129:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1 ENST00000511309.5_1_5:176730986-176733129:+|nuORF ENST00000511309.5_1_5:176730986-176733129:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 406.5494689941406 3 406.548629 1216.62406 0.5344 0.00021726 0.57632 0.0002343 1.1107 0.00045156 406.54882745732067 38.735 0.62469 34.284 33.914 34.538 -4.4509 74 39 3 0 0 0 0.093652 2 22927 22783;22927 48.073 27.492 1 19256000 79578 7853 53265 54392 92589;92590 92590 0.02441103397381994 YPNRGNTCL 9 Carbamidomethyl (C) _YPNRGNTC(Carbamidomethyl (C))L_ YPNRGNTC(1)L YPNRGNTC(66)L 0 1 0 ENSG00000258289|ENST00000549115|CHURC1;nc|ENSG00000258289|Q8WUH1-2|CHURC1;nc|ENSG00000258289|Q8WUH1-1|CHURC1;ENST00000556089.1_1_14:65381213-65390849:+|nuORF;nc|ENSG00000258289|Q8WUH1-3|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 ENSG00000258289|ENST00000549115|CHURC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7547607421875 2 547.756015 1093.49748 0.46342 0.00025384 -4.0108 -0.002197 -3.5474 -0.0019431 547.7538143072027 26.909 0.24827 23.872 23.701 23.949 -3.0365 24 12 3 0 0 0 0.017075 1 14856 14856 66.457 19.536 1 13675000 79579 10816 53266 54393 92591 92591 954 -0.04553146099442529 YPNSGSVSAY 10 Unmodified _YPNSGSVSAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7354736328125 2 522.735271 1043.45599 -0.56258 -0.00029408 0.24621 0.0001287 -0.31637 -0.00016538 522.7354442735299 32.841 0.74622 32.841 32.618 33.365 0 79 37 4 0 0 0 0.051223 2 17113 17113;17220 57.722 28.64 1 32416000 79580 16209 53267 54394 92592;92593 92592 -0.06400003587077663 YPNSGSVSAY 10 Unmodified _YPNSGSVSAY_ 0 0 0 nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.7356567382812 2 522.735271 1043.45599 0.53693 0.00028067 0.31048 0.0001623 0.84741 0.00044297 522.7353401318313 38.505 0.46415 34.136 33.9 34.364 -4.3689 71 29 3 0 0 0 0.20962 1 22723 22723 32.786 15.673 1 57743000 79581 16209 53267 54394 92594 92594 -0.06400003587077663 YPNSHTHYF 9 Unmodified _YPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 389.1730346679688 3 389.173562 1164.49886 -0.80121 -0.00031181 1.1998 0.00046694 0.3986 0.00015513 389.17397619333815 28.175 0.26548 28.175 28.065 28.33 0 37 13 4 0 0 0 0.14602 1 14536 14536 39.95 31.204 1 2814300 79582 3829 53268 54395 92595 92595 -0.0768118873900221 YPNSHTHYF 9 Unmodified _YPNSHTHYF_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1742858886719 3 389.173562 1164.49886 0.56932 0.00022156 0.16815 6.5438E-05 0.73747 0.000287 389.50780834760155 28.108 0.18532 28.062 27.956 28.142 -0.046408 12 6 2 0 0 0 0.10734 1 14489 14489 36.506 26.356 1 4576000 79583 3829 53268 54395 92596 92596 -0.0768118873900221 YPNTYIFDLF 10 Unmodified _YPNTYIFDLF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.8135375976562 2 646.813522 1291.61249 -0.18474 -0.00011949 0.81506 0.00052719 0.63032 0.0004077 646.814043798915 101.14 0.10353 101.1 101.03 101.14 -0.04216 9 3 4 0 0 0 0.0199 1 56205 56205 75.761 44.492 1 17924000 79584 1899 53269 54396 92597 92597 -0.021651384166261778 YPNTYIFDLF 10 Unmodified _YPNTYIFDLF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 646.8132934570312 2 646.813522 1291.61249 0.64309 0.00041596 0.33392 0.00021598 0.97701 0.00063194 646.8140715287695 101.65 0.1292 95.472 95.395 95.524 -6.1757 22 6 5 0 0 0 0.011118 1 68213 68213 85.642 39.942 1 65224000 79585 1899 53269 54396 92598 92598 -0.021651384166261778 YPNTYIFDLF 10 Unmodified _YPNTYIFDLF_ 0 0 0 ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP ENSG00000100991|ENST00000252015|TRPC4AP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 646.813522 1291.61249 0.19531 0.00012633 0.40926 0.00026472 0.60457 0.00039104 646.8135637481032 101.18 0.069481 101.05 100.99 101.06 -0.13293 -0.027897 -0.00040798 NaN 75.761 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 557090 79586 1899 53269 54396 -0.021651384166261778 YPNVGKSSF 9 Unmodified _YPNVGKSSF_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7520751953125 2 499.750724 997.486896 -0.51674 -0.00025824 0.3081 0.00015397 -0.20864 -0.00010427 499.75119916974666 35.064 0.26797 34.841 34.711 34.979 -0.2224 20 11 2 0 0 0 0.11784 1 18345 18345 31.268 8.1199 1 1735600 79587 2532 53270 54397 92599 92599 -0.011948054821800724 YPNVGKSSF 9 Unmodified _YPNVGKSSF_ 0 0 0 ENSG00000107937|ENST00000360803|GTPBP4;nc|ENSG00000107937|Q9BZE4-2|GTPBP4;nc|ENSG00000107937|Q9BZE4-3|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 ENSG00000107937|ENST00000360803|GTPBP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.746826171875 2 499.750724 997.486896 0.90353 0.00045154 -2.0034 -0.0010012 -1.0998 -0.00054965 499.74989236597355 39.564 0.2696 35.113 34.964 35.233 -4.4509 25 16 2 0 0 0 0.036857 2 23458 23437;23458 51.63 15.452 1 19923000 79588 2532 53270 54397 92600;92601 92601 -0.011948054821800724 YPNVNIHNF 9 Unmodified _YPNVNIHNF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2734985351562 2 559.274898 1116.53524 0.92385 0.00051669 -1.3089 -0.00073206 -0.38508 -0.00021537 559.2737074339926 51.118 0.306 51.118 50.996 51.302 0 36 14 3 0 0 0 0.0055767 1 28190 28190 115.69 81.59 1 16436000 79589 3108 53271 54398 92602 92602 -0.018363118422939806 YPNVNIHNF 9 Unmodified _YPNVNIHNF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2767333984375 2 559.274898 1116.53524 0.22654 0.0001267 -0.442 -0.0002472 -0.21546 -0.0001205 559.2746704227587 51.696 0.48617 51.262 51.026 51.512 -0.43367 98 25 5 0 0 0 0.0067112 3 27792 27792;27898;28000 112.59 76.549 1 209960000 79590 3108 53271 54398 92603;92604;92605 92603 -0.018363118422939806 YPNVNIHNF 9 Unmodified _YPNVNIHNF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2754516601562 2 559.274898 1116.53524 0.13177 7.3697E-05 -0.51015 -0.00028531 -0.37838 -0.00021162 559.274564462241 51.359 0.35308 51.305 51.107 51.46 -0.053871 51 17 4 0 0 0 0.0014543 2 27751 27751;27865 136.33 100.29 1 13054000 79591 3108 53271 54398 92606;92607 92606 -0.018363118422939806 YPNVNIHNF 9 Unmodified _YPNVNIHNF_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 559.2749633789062 2 559.274898 1116.53524 0.89303 0.00049945 -0.91431 -0.00051135 -0.021275 -1.1899E-05 559.2743630802422 57.013 0.80761 51.036 50.615 51.423 -5.9769 115 46 3 0 0 0 0.00069393 3 36444 36309;36444;36576 141.83 105.78 1 853690000 79592 3108 53271 54398 92608;92609;92610 92609 -0.018363118422939806 YPNVNVHNF 9 Unmodified _YPNVNVHNF_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.268310546875 2 552.267073 1102.51959 NaN NaN NaN NaN NaN NaN NaN 45.445 1 45.445 44.945 45.945 0 0 0 0 0.041018 1 24775 24775 78.149 39.998 1 79593 8374 53272 54399 92611 92611 -0.027565983593376586 YPNVNVHNF 9 Unmodified _YPNVNVHNF_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2680053710938 2 552.267073 1102.51959 NaN NaN NaN NaN NaN NaN NaN 45.859 1 45.535 45.035 46.035 -0.32425 0 0 0 0.022544 1 24521 24521 128.37 86.271 1 79594 8374 53272 54399 92612 92612 -0.027565983593376586 YPNVNVHNF 9 Unmodified _YPNVNVHNF_ 0 0 0 ENSG00000173898|ENST00000533211|SPTBN2;nc|ENSG00000173898|O15020-2|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 ENSG00000173898|ENST00000533211|SPTBN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.26708984375 2 552.267073 1102.51959 1.0245 0.0005658 -0.18279 -0.00010095 0.84171 0.00046485 552.2669687834892 50.939 0.45809 45.29 45.053 45.511 -5.649 65 27 3 0 0 0 0.0074582 2 32067 31936;32067 136.33 113.18 1 105200000 79595 8374 53272 54399 92613;92614 92614 -0.027565983593376586 YPNYLIRKF 9 Unmodified _YPNYLIRKF_ 0 0 0 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 ENSG00000129534|ENST00000310806|MIS18BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.5632934570312 3 405.229119 1212.66553 0.48153 0.00019513 -0.18617 -7.544E-05 0.29537 0.00011969 405.2289956354223 49.498 0.26231 49.449 49.25 49.512 -0.048828 18 12 2 0 0 0 0.54816 1 26767 26767 4.5289 3.3355 1 1543300 79596 4148 53273 54400 92615 92615 0.06770284156687012 YPPATYDQY 9 Unmodified _YPPATYDQY_ 0 0 0 ENSG00000132819|ENST00000356208|RBM38;ENST00000344785.10_1_20:55967744-55982899:+|nuORF ENSG00000132819|ENST00000356208|RBM38 ENSG00000132819|ENST00000356208|RBM38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2479858398438 2 559.245472 1116.47639 0.37567 0.00021009 1.0893 0.00060919 1.465 0.00081929 559.2460259686412 39.923 0.37706 39.923 39.616 39.993 0 35 18 2 0 0 0 0.18465 1 21345 21345 24.674 12.142 1 2038800 79597 4453 53274 54401 92616 92616 -0.07718832927298536 YPPEDPYDYYH 11 Unmodified _YPPEDPYDYYH_ 0 0 0 ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A ENSG00000091536|ENST00000647165|MYO15A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 486.8665771484375 3 486.866464 1457.57756 0.95758 0.00046622 -0.26307 -0.00012808 0.69452 0.00033814 486.86657662479234 57.36 0.27718 57.294 57.14 57.418 -0.066036 26 13 4 0 0 0 0.73992 1 31216 31216 0.50596 0 1 2540000 79598 1590 53275 54402 92617 92617 -0.13292426015232195 YPPEKGEEY 9 Unmodified _YPPEKGEEY_ 0 0 0 CON__Q3SZV7 CON__Q3SZV7 CON__Q3SZV7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2513427734375 2 556.250754 1110.48696 0.015172 8.4392E-06 0.76873 0.00042761 0.7839 0.00043604 556.2510990237728 21.945 0.89123 21.945 21.679 22.57 0 163 79 3 0 0 0 0.14 4 11192 11086;11192;11293;11389 29.082 7.3349 1 2520500 + 79599 202 53276 54403 92618;92619;92620;92621 92619 -0.06386850272861011 YPPFFRYM 8 Unmodified _YPPFFRYM_ 0 0 0 REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1818542480469 3 374.181001 1119.52117 NaN NaN NaN NaN NaN NaN NaN 1.164 1 1.1434 0.64339 1.6434 -0.020623 0 0 0 0.97444 1 599 599 0.40072 0 1 + 79600 27099 53277 54404 92622 92622 -0.033806805949552654 YPPFPLLLGGR 11 Unmodified _YPPFPLLLGGR_ 0 0 0 REV__ENST00000561824.5_1_16:30212049-30214087:+|nuORF REV__ENST00000561824.5_1_16:30212049-30214087:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.2088623046875 3 410.572886 1228.69683 -0.04309 -1.7692E-05 3.067 0.0012592 3.024 0.0012416 410.57430695026386 28.34 0.18112 28.369 28.286 28.467 0.029566 11 7 2 0 0 0 0.30533 1 14715 14715 3.0723 1.1659 1 3678000 + 79601 28849 53278 54405 92623 92623 0.09162857190790419 YPPFSHRY 8 Unmodified _YPPFSHRY_ 0 0 0 nc|ENSG00000133872|Q96BY9-2|SARAF;ENSG00000133872|ENST00000256255|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF nc|ENSG00000133872|Q96BY9-2|SARAF MSMS AL20221201_MKP_PDAC_01 4 356.1752014160156 3 356.175015 1065.50321 NaN NaN NaN NaN NaN NaN NaN 32.381 1 28.524 28.024 29.024 -3.8562 0 0 0 0.786 1 18447 18447 19.362 1.227 1 79602 4539 53279 54406 92624 92624 -0.026916795254237513 YPPGTQVVY 9 Unmodified _YPPGTQVVY_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MSMS AL20221201_MKP_PDAC_01 4 512.2603759765625 2 512.260925 1022.5073 NaN NaN NaN NaN NaN NaN NaN 52.854 1 47.05 46.55 47.55 -5.8042 0 0 0 0.18753 1 33372 33372 32.305 10.559 1 79603 16138;16139 53280 54407 92625 92625 -0.0030563482237084827 YPPHPDYT 8 Unmodified _YPPHPDYT_ 0 0 0 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2209167480469 2 495.2218 988.429047 NaN NaN NaN NaN NaN NaN NaN 16.575 1 16.575 16.075 17.075 0 0 0 0 0.97444 1 8095 8095 2.3027 0.4585 1 79604 4202 53281 54408 92626 92626 -0.06563067407626022 YPPHPDYT 8 Unmodified _YPPHPDYT_ 0 0 0 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 ENSG00000130309|ENST00000252599|COLGALT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.2214660644531 2 495.2218 988.429047 NaN NaN NaN NaN NaN NaN NaN 93.33 1 93.33 92.83 93.83 0 0 0 0 0.97444 1 51600 51600 0.79363 0 1 79605 4202 53281 54408 92627 92627 -0.06563067407626022 YPPHSHSI 8 Unmodified _YPPHSHSI_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 469.2298278808594 2 469.229959 936.445365 -0.10844 -5.0884E-05 -1.3209 -0.00061979 -1.4293 -0.00067068 469.2291675355485 19.892 0.13978 19.892 19.801 19.941 0 19 15 2 0 0 0 0.46494 1 9968 9968 38.151 13.477 1 586530 79606 7545;15223 53282 54409 92628 92628 -0.025399414508569862 YPPHSHSI 8 Unmodified _YPPHSHSI_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 469.230712890625 2 469.229959 936.445365 0.68296 0.00032047 0.88332 0.00041448 1.5663 0.00073495 469.2301700325887 22.216 0.297 19.482 19.32 19.617 -2.7348 32 15 3 0 0 0 0.1036 2 11891 11891;11998 98.807 49.138 1 3648400 79607 7545;15223 53282 54409 92629;92630 92629 -0.025399414508569862 YPPIRHHL 8 Unmodified _YPPIRHHL_ 0 0 0 nc|ENSG00000155975|Q8NEZ2-3|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A;ENSG00000155975|ENST00000324849|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A nc|ENSG00000155975|Q8NEZ2-3|VPS37A MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7906494140625 2 516.790518 1031.56648 0.74028 0.00038257 0.02107 1.0889E-05 0.76135 0.00039346 516.7903586228884 28.722 0.61932 25.574 25.16 25.779 -3.1482 50 31 3 0 0 0 0.11943 2 15960 15960;16086 93.883 57.756 1 14690000 79608 6421 53283 54410 92631;92632 92631 0.051963059824629454 YPPKLHQF 8 Unmodified _YPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 515.2794189453125 2 515.279452 1028.54435 0.3136 0.00016159 0.57847 0.00029807 0.89207 0.00045967 515.2797887939439 41.109 0.73358 41.107 40.711 41.444 -0.0017891 77 35 3 0 0 0 0.11943 3 21891 21784;21891;22005 93.883 59.696 1 6362300 79609 2282 53284 54411 92633;92634;92635 92634 0.031220815140159175 YPPKLHQF 8 Unmodified _YPPKLHQF_ 0 0 0 nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;nc|ENSG00000105173|P24864-2|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 nc|ENSG00000105173|P24864-3|CCNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 515.2799682617188 2 515.279452 1028.54435 0.62232 0.00032067 0.261 0.00013449 0.88332 0.00045516 515.2794493942031 45.643 0.8376 40.688 40.254 41.091 -4.9549 133 56 3 0 0 0 0.17035 2 27908 27908;28051 81.864 55.523 1 50186000 79610 2282 53284 54411 92636;92637 92636 0.031220815140159175 YPPKNVKSWD 10 Unmodified _YPPKNVKSWD_ 0 0 0 REV__nc|ENSG00000102024|P13797-3|PLS3 REV__nc|ENSG00000102024|P13797-3|PLS3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.316162109375 2 617.316763 1232.61897 NaN NaN NaN NaN NaN NaN NaN 25.994 1 25.994 25.494 26.494 0 0 0 0 0.99091 1 13347 13347 1.6526 0 1 + 79611 18216 53285 54412 92638 92638 0.011967995347504257 YPPLDPQLQ 9 Unmodified _YPPLDPQLQ_ 0 0 0 ENST00000498057.1_1_3:48678700-48679554:-|nuORF ENST00000498057.1_1_3:48678700-48679554:-|nuORF ENST00000498057.1_1_3:48678700-48679554:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.2974853515625 2 535.779482 1069.54441 0.61241 0.00032812 -0.20682 -0.00011081 0.40558 0.0002173 536.2812928784692 49.834 0.21212 49.834 49.754 49.966 0 15 9 2 0 0 0 0.14225 1 27461 27461 30.637 5.2372 1 2079300 79612 14412 53286 54413 92639 92639 0.0124203672337444 YPPNTGDFVY 10 Unmodified _YPPNTGDFVY_ 0 0 0 REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B REV__nc|ENSG00000038274|Q9NZL9-3|MAT2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7681884765625 2 586.766571 1171.51859 0.72689 0.00042651 -1.7649 -0.0010356 -1.038 -0.00060906 587.2664896734494 48.263 0.78555 43.03 42.496 43.282 -5.2339 121 47 4 0 0 0 0.44373 1 30136 30136 19.257 7.0163 1 54442000 + 79613 17176 53287 54414 92640 92640 -0.06030857518908306 YPPPADTPV 9 Unmodified _YPPPADTPV_ 0 0 0 REV__ENSG00000166546|ENST00000536005|BEAN1 REV__ENSG00000166546|ENST00000536005|BEAN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 478.7382202148438 2 478.739825 955.465098 NaN NaN NaN NaN NaN NaN NaN 64.285 1 64.285 63.785 64.785 0 0 0 0 0.82739 1 35849 35849 4.3292 0 1 + 79614 22132 53288 54415 92641 92641 -0.014416102307677647 YPPPHQVF 8 Unmodified _YPPPHQVF_ 0 0 0 ENSG00000076248|ENST00000242576|UNG;nc|ENSG00000076248|P13051-2|UNG;ENST00000540158.1_1_12:109535484-109537104:+|nuORF ENSG00000076248|ENST00000242576|UNG ENSG00000076248|ENST00000242576|UNG MSMS AL20221201_MKP_PDAC_01 4 492.7513122558594 2 492.750527 983.486502 NaN NaN NaN NaN NaN NaN NaN 42.386 1 37.701 37.201 38.201 -4.6846 0 0 0 0.50394 1 25599 25599 40.449 21.01 1 79615 1183 53289 54416 92642 92642 -0.005901804113932485 YPPQYPPTAF 10 Unmodified _YPPQYPPTAF_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.786376953125 2 590.787307 1179.56006 0.032044 1.8931E-05 -0.15338 -9.0616E-05 -0.12134 -7.1685E-05 590.787121869817 60.339 0.99908 59.848 59.352 60.351 -0.49079 101 49 3 0 0 0 0.07026 4 32742 32742;32852;32966;33070 62.573 44.426 1 6314900 79616 9647 53290 54417 92643;92644;92645;92646 92643 -0.022536767595738638 YPPQYPPTAF 10 Unmodified _YPPQYPPTAF_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 590.7885131835938 2 590.787307 1179.56006 NaN NaN NaN NaN NaN NaN NaN 59.863 1 59.372 58.872 59.872 -0.49079 0 0 0 0.32543 1 32579 32579 49.933 25.259 1 79617 9647 53290 54417 92647 92647 -0.022536767595738638 YPPQYPPTAF 10 Unmodified _YPPQYPPTAF_ 0 0 0 ENSG00000188313|ENST00000342435|PLSCR1;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;ENST00000469266.1_1_3:146246325-146262351:-|nuORF;ENST00000486631.5_3_3:146243405-146262311:-|nuORF ENSG00000188313|ENST00000342435|PLSCR1 ENSG00000188313|ENST00000342435|PLSCR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7880859375 2 590.787307 1179.56006 0.54407 0.00032143 0.09381 5.5422E-05 0.63788 0.00037685 590.787310838917 67.033 1.3015 60.858 60.137 61.438 -6.1757 177 73 3 0 0 0 0.0081376 6 43714 43314;43443;43584;43714;43845;44006 118.89 80.719 1 55375000 79618 9647 53290 54417 92648;92649;92650;92651;92652;92653 92651 -0.022536767595738638 YPPSHLHS 8 Unmodified _YPPSHLHS_ 0 0 0 ENST00000357461.6_1_14:67937818-67938346:-|nuORF ENST00000357461.6_1_14:67937818-67938346:-|nuORF ENST00000357461.6_1_14:67937818-67938346:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 469.229736328125 2 469.229959 936.445365 -0.46382 -0.00021764 0.024383 1.1441E-05 -0.43943 -0.00020619 469.22932715693753 19.737 0.1036 19.766 19.713 19.817 0.028357 9 6 2 0 0 0 0.72953 1 9975 9975 14.582 0 1 441480 79619 12112 53291 54418 92654 92654 -0.025399414508569862 YPPVKLQS 8 Unmodified _YPPVKLQS_ 0 0 0 REV__nc|ENSG00000111321|P36941-2|LTBR REV__nc|ENSG00000111321|P36941-2|LTBR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.2654724121094 2 466.26601 930.517468 NaN NaN NaN NaN NaN NaN NaN 7.1358 1 7.1511 6.6511 7.6511 0.015238 0 0 0 0.97444 1 3561 3561 0.79363 0 1 + 79620 29568 53292 54419 92655 92655 0.049429729028588554 YPQAQHSHY 9 Unmodified _YPQAQHSHY_ 0 0 0 nc|ENSG00000172733|Q9UJV8-2|PURG;ENSG00000172733|ENST00000523392|PURG nc|ENSG00000172733|Q9UJV8-2|PURG nc|ENSG00000172733|Q9UJV8-2|PURG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7489013671875 2 565.75433 1129.49411 NaN NaN NaN NaN NaN NaN NaN 55.722 1 55.722 55.222 56.222 0 0 0 0 0.32622 1 30966 30966 25.399 3.6527 1 79621 8248 53293 54420 92656 92656 -0.0654607288176976 YPQAQHSHY 9 Unmodified _YPQAQHSHY_ 0 0 0 nc|ENSG00000172733|Q9UJV8-2|PURG;ENSG00000172733|ENST00000523392|PURG nc|ENSG00000172733|Q9UJV8-2|PURG nc|ENSG00000172733|Q9UJV8-2|PURG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7575073242188 2 565.75433 1129.49411 NaN NaN NaN NaN NaN NaN NaN 55.735 1 55.735 55.235 56.235 0 0 0 0 0.20976 1 30973 30973 39.957 11.47 1 79622 8248 53293 54420 92657 92657 -0.0654607288176976 YPQDNMHQM 9 Oxidation (M) _YPQDNM(Oxidation (M))HQM_ YPQDNM(0.995)HQM(0.005) YPQDNM(23)HQM(-23) 0 0 1 nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 nc|ENSG00000127616|P51532-5|SMARCA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.2315063476562 2 590.231516 1178.44848 1.0352 0.00061101 -0.14643 -8.6428E-05 0.88878 0.00052459 590.2313973520176 20.457 0.27508 17.764 17.646 17.921 -2.693 20 13 2 0 0 0 0.032796 1 10897 10897 53.833 39.927 2 2029800 79623 4023 53294 54421 92658 92658 720 -0.13360802450688425 YPQECVANE 9 Unmodified _YPQECVANE_ 0 0 0 REV__nc|ENSG00000196364|A6NIE9|PRSS29P REV__nc|ENSG00000196364|A6NIE9|PRSS29P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.72216796875 2 526.721307 1051.42806 0.54547 0.00028731 1.2919 0.00068049 1.8374 0.00096781 526.7219496057107 62.573 0.28949 62.085 61.894 62.183 -0.48764 32 13 4 0 0 0 0.36964 1 34059 34059 13.906 5.7505 1 5186600 + 79624 29880 53295 54422 92659 92659 -0.09559649838843143 YPQELLSFAY 10 Unmodified _YPQELLSFAY_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MSMS AL20221201_MKP_PDAC_01 4 615.805908203125 2 615.805697 1229.59684 NaN NaN NaN NaN NaN NaN NaN 95.877 1 89.701 89.201 90.201 -6.1757 0 0 0 0.52595 1 63517 63517 24.991 1.8425 1 79625 1191 53296 54423 92660 92660 -0.008774249336738649 YPQENIIDTF 10 Unmodified _YPQENIIDTF_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.2985229492188 2 620.298236 1238.58192 0.47949 0.00029743 0.096225 5.9688E-05 0.57572 0.00035712 620.2977978463562 72.633 0.33289 72.633 72.487 72.819 0 23 15 2 0 0 0 0.26936 1 40441 40441 40.239 24.392 1 2971100 79626 4821 53297 54424 92661 92661 -0.027829168016751282 YPQENIIDTF 10 Unmodified _YPQENIIDTF_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.2992553710938 2 620.298236 1238.58192 0.49694 0.00030825 0.3595 0.00022299 0.85643 0.00053124 620.2983399253114 80.723 0.47198 74.548 74.391 74.863 -6.1757 36 25 2 0 0 0 0.040614 2 52943 52943;53066 82.529 44.354 1 12876000 79627 4821 53297 54424 92662;92663 92662 -0.027829168016751282 YPQENIIDTF 10 Unmodified _YPQENIIDTF_ 0 0 0 nc|ENSG00000136448|P30419-2|NMT1;ENSG00000136448|ENST00000258960|NMT1;ENST00000587014.1_1_17:43180336-43181457:+|nuORF nc|ENSG00000136448|P30419-2|NMT1 nc|ENSG00000136448|P30419-2|NMT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 620.298236 1238.58192 0.70964 0.00044019 -0.63895 -0.00039634 0.070696 4.3852E-05 620.2979148227237 73.175 0.28416 72.699 72.497 72.781 -0.47588 0.032935 -0.0006954 NaN 40.239 19 12 2 NaN NaN NaN NaN 0 NaN NaN 0 548040 79628 4821 53297 54424 -0.027829168016751282 YPQEVIPTF 9 Unmodified _YPQEVIPTF_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.2815551757812 2 547.281857 1092.54916 0.51477 0.00028173 -0.39046 -0.00021369 0.12431 6.8033E-05 547.281498326917 74.483 1.1412 74.483 73.969 75.111 0 126 55 5 0 0 0 0.039985 2 41461 41367;41461 49.933 29.479 1 28254000 79629 2229 53298 54425 92664;92665 92665 0.006589208661353041 YPQEVIPTF 9 Unmodified _YPQEVIPTF_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.2835693359375 2 547.281857 1092.54916 0.61968 0.00033914 -0.32186 -0.00017615 0.29782 0.00016299 547.2815982951313 74.968 0.553 74.491 74.206 74.759 -0.47713 84 23 5 0 0 0 0.024882 3 40955 40955;41054;41156 58.679 34.658 1 61596000 79630 2229 53298 54425 92666;92667;92668 92666 0.006589208661353041 YPQEVIPTF 9 Unmodified _YPQEVIPTF_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2820434570312 2 547.281857 1092.54916 0.28954 0.00015846 0.43598 0.00023861 0.72552 0.00039706 547.2824072213831 74.445 0.33573 74.491 74.302 74.637 0.045967 32 14 3 0 0 0 0.047788 2 40990 40990;41091 45.7 25.246 1 5214000 79631 2229 53298 54425 92669;92670 92669 0.006589208661353041 YPQEVIPTF 9 Unmodified _YPQEVIPTF_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2819213867188 2 547.281857 1092.54916 0.3474 0.00019013 -0.21606 -0.00011825 0.13135 7.1883E-05 547.2818019233853 82.319 0.95338 76.143 75.761 76.715 -6.1757 175 53 5 0 0 0 0.0090948 4 54138 53880;54009;54138;54264 85.272 56.19 1 412150000 79632 2229 53298 54425 92671;92672;92673;92674 92673 0.006589208661353041 YPQFVLTYL 9 Unmodified _YPQFVLTYL_ 0 0 0 ENST00000342355.8_1_11:30965860-31263019:-|nuORF;nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1 ENST00000342355.8_1_11:30965860-31263019:-|nuORF ENST00000342355.8_1_11:30965860-31263019:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 572.3065185546875 2 572.307875 1142.6012 NaN NaN NaN NaN NaN NaN NaN 76.205 1 70.029 69.529 70.529 -6.1757 0 0 0 0.36554 1 49850 49850 21.747 0 1 79633 8052 53299 54426 92675 92675 0.0356008427991128 YPQGDFPAEM 10 Oxidation (M) _YPQGDFPAEM(Oxidation (M))_ YPQGDFPAEM(1) YPQGDFPAEM(58) 0 0 1 ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP ENSG00000085872|ENST00000546361|CHERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7422485351562 2 585.742239 1169.46993 0.23254 0.00013621 -0.66713 -0.00039077 -0.43459 -0.00025456 585.7417147330665 39.271 0.60461 39.271 38.97 39.575 0 60 28 3 0 0 0 0.051223 1 20990 20990 57.722 40.609 1 3414000 79634 1423 53300 54427 92676 92676 236 -0.10803094150332981 YPQGLPEDQL 10 Unmodified _YPQGLPEDQL_ 0 0 0 nc|ENSG00000162006|Q96KJ4|MSLNL;ENSG00000162006|ENST00000543963|MSLNL nc|ENSG00000162006|Q96KJ4|MSLNL nc|ENSG00000162006|Q96KJ4|MSLNL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2838134765625 2 580.285128 1158.5557 0.59257 0.00034386 2.4539 0.001424 3.0465 0.0017678 580.2858522932835 72.146 0.55082 71.67 71.469 72.02 -0.4761 47 24 3 0 0 0 0.6606 1 39667 39667 7.2892 0.56607 1 2561600 79635 6827 53301 54428 92677 92677 -0.017231859731509758 YPQGQGQQY 9 Unmodified _YPQGQGQQY_ 0 0 0 ENSG00000141380|ENST00000415083|SS18;nc|ENSG00000141380|Q15532-2|SS18;ENST00000580958.5_1_18:23598320-23615185:-|nuORF ENSG00000141380|ENST00000415083|SS18 ENSG00000141380|ENST00000415083|SS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7412719726562 2 534.740888 1067.46722 -0.13152 -7.0328E-05 0.87731 0.00046913 0.74579 0.0003988 534.7412271139473 22.446 0.57119 22.446 22.204 22.775 0 46 27 2 0 0 0 0.41742 1 11381 11381 11.64 6.8843 1 747560 79636 5321 53302 54429 92678 92678 -0.06381181492952237 YPQGQLLSY 9 Unmodified _YPQGQLLSY_ 0 0 0 REV__ENSG00000071991|ENST00000262150|CDH19 REV__ENSG00000071991|ENST00000262150|CDH19 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 534.7943725585938 2 534.771657 1067.52876 -0.35875 -0.00019185 0.10272 5.493E-05 -0.25603 -0.00013692 534.7720198491186 26.793 0.6289 26.793 26.343 26.972 0 45 29 2 0 0 0 0.16895 1 13743 13743 24.021 0 1 1434000 + 79637 17502 53303 54430 92679 92679 -0.002302497936625514 YPQIRCTWTF 10 Unmodified _YPQIRCTWTF_ 0 0 0 ENSG00000122025|ENST00000241453|FLT3;nc|ENSG00000122025|P36888-2|FLT3 ENSG00000122025|ENST00000241453|FLT3 ENSG00000122025|ENST00000241453|FLT3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.8818359375 3 438.881502 1313.62268 NaN NaN NaN NaN NaN NaN NaN 21.192 1 21.205 20.705 21.705 0.013582 0 0 0 0.9997 1 10838 10838 0.69767 0 1 79638 3617 53304 54431 92680 92680 -0.021588539630556625 YPQIVLAPGL 10 Unmodified _YPQIVLAPGL_ 0 0 0 nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-2|ZNF638 nc|ENSG00000075292|Q14966-2|ZNF638 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 535.274169921875 2 535.815867 1069.61718 0.94825 0.00050809 0.50953 0.00027301 1.4578 0.0007811 536.3166735255281 88.826 0.14655 82.65 82.599 82.746 -6.1757 8 7 2 0 0 0 0.22667 1 58652 58652 15.847 9.6414 1 4285400 79639 16051 53305 54432 92681 92681 0.08515790516798916 YPQKIKAEL 9 Unmodified _YPQKIKAEL_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.3181762695312 2 545.318774 1088.623 -0.11846 -6.4597E-05 -0.24647 -0.00013441 -0.36493 -0.000199 545.3184685606308 30.946 0.21914 30.946 30.831 31.051 0 24 10 3 0 0 0 0.013609 1 16110 16110 70.332 38.027 1 4403000 79640 16194 53306 54433 92682 92682 0.08222889028456848 YPQKIKAEL 9 Unmodified _YPQKIKAEL_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8821411132812 3 363.881608 1088.623 1.5003 0.00054594 -0.27753 -0.00010099 1.2228 0.00044495 363.88149850356956 34.628 0.38756 30.533 30.348 30.735 -4.0951 50 22 3 0 0 0 0.1685 1 19953 19953 19.626 9.4754 1 24256000 79641 16194 53306 54433 92683 92683 0.08222889028456848 YPQKIKAEL 9 Unmodified _YPQKIKAEL_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 545.2560424804688 2 545.318774 1088.623 0.7391 0.00040304 -0.84783 -0.00046234 -0.10873 -5.9291E-05 545.3182736206747 34.6 0.33332 30.504 30.366 30.7 -4.0951 34 19 2 0 0 0 0.16524 1 19889 19889 26.268 10.421 1 17145000 79642 16194 53306 54433 92684 92684 0.08222889028456848 YPQKIKAEL 9 Unmodified _YPQKIKAEL_ 0 0 0 nc|ENSG00000132669|Q8WYP3-2|RIN2;ENSG00000132669|ENST00000255006|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 nc|ENSG00000132669|Q8WYP3-2|RIN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 545.318774 1088.623 0.18866 0.00010288 0.050194 2.7372E-05 0.23886 0.00013025 545.3189121172378 30.935 0.1741 30.832 30.717 30.891 -0.10269 0.071322 0.00060831 NaN 70.332 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 994910 79643 16194 53306 54433 0.08222889028456848 YPQLLEIKK 9 Unmodified _YPQLLEIKK_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2745971679688 2 566.342249 1130.66995 0.34162 0.00019348 -1.0443 -0.00059144 -0.70269 -0.00039796 566.3417079713545 54.29 0.13355 53.824 53.707 53.841 -0.46664 10 6 2 0 0 0 0.20727 1 29412 29412 7.9102 0.62092 1 1447700 79644 641 53307 54434 92685 92685 0.1098374857961062 YPQNPDHVL 9 Unmodified _YPQNPDHVL_ 0 0 0 nc|ENSG00000126561|P42229-2|STAT5A;ENSG00000126561|ENST00000590949|STAT5A nc|ENSG00000126561|P42229-2|STAT5A nc|ENSG00000126561|P42229-2|STAT5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7666015625 2 541.766906 1081.51926 NaN NaN NaN NaN NaN NaN NaN 35.576 1 35.576 35.076 36.076 0 0 0 0 0.13831 1 18817 18817 38.176 13.502 1 79645 3956 53308 54435 92686 92686 -0.018240180791963212 YPQPGMQRF 9 Oxidation (M) _YPQPGM(Oxidation (M))QRF_ YPQPGM(1)QRF YPQPGM(46)QRF 0 0 1 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 ENSG00000151929|ENST00000369085|BAG3 MSMS AL20221201_MKP_PDAC_01 4 570.2686157226562 2 570.268758 1138.52296 NaN NaN NaN NaN NaN NaN NaN 35.738 1 31.546 31.046 32.046 -4.1928 0 0 0 0.08978 1 20777 20777 46.021 11.919 1 79646 6157 53309 54436 92687 92687 1100 -0.04075671576970308 YPQPMPPTHPM 11 Unmodified _YPQPMPPTHPM_ 0 0 0 ENSG00000135926|ENST00000258412|TMBIM1;ENST00000495113.5_1_2:219143236-219146864:-|nuORF ENSG00000135926|ENST00000258412|TMBIM1 ENSG00000135926|ENST00000258412|TMBIM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3009033203125 2 648.299201 1294.58385 1.5711 0.0010185 -0.21764 -0.0001411 1.3534 0.00087744 648.2991257688899 47.669 0.35352 42.435 42.197 42.55 -5.2339 32 20 2 0 0 0 0.00036894 1 29560 29560 90.135 71.989 1 8963600 79647 4760 53310 54437 92688 92688 -0.05165902589055804 YPQPPSQSY 9 Unmodified _YPQPPSQSY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.74560546875 2 533.745639 1065.47673 -0.34528 -0.00018429 0.37791 0.00020171 0.032633 1.7418E-05 533.7459677641831 34.836 1.1828 34.836 34.123 35.306 0 202 61 4 0 0 0 0.0085164 5 18165 18049;18165;18272;18385;18496 99.799 53.778 1 72154000 79648 5036 53311 54438 92689;92690;92691;92692;92693 92690 -0.053394132074117806 YPQPPSQSY 9 Unmodified _YPQPPSQSY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7454833984375 2 533.745639 1065.47673 -0.37732 -0.0002014 0.81153 0.00043315 0.4342 0.00023175 533.7458870243424 35.081 0.78933 34.859 34.362 35.151 -0.2224 86 35 3 0 0 0 0.0085164 3 18398 18198;18299;18398 99.799 53.778 1 4614900 79649 5036 53311 54438 92694;92695;92696 92696 -0.053394132074117806 YPQPPSQSY 9 Unmodified _YPQPPSQSY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 533.7459106445312 2 533.745639 1065.47673 0.75981 0.00040555 0.12803 6.8333E-05 0.88784 0.00047388 533.7456165935861 40.632 1.0793 36.102 35.512 36.592 -4.5294 228 75 4 0 0 0 0.001066 6 24155 23899;24030;24155;24282;24410;24542 139.14 86.87 1 145080000 79650 5036 53311 54438 92697;92698;92699;92700;92701;92702 92699 -0.053394132074117806 YPQPSYNQY 9 Unmodified _YPQPSYNQY_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 580.256591796875 2 580.256371 1158.49819 0.39278 0.00022791 -1.5801 -0.00091684 -1.1873 -0.00068892 580.2553929933988 38.289 0.52796 38.289 38.007 38.535 0 58 37 2 0 0 0 0.06294 2 20438 20326;20438 41.84 23.693 1 18448000 79651 2302;16103 53312 54439 92703;92704 92704 -0.07472028178699475 YPQPSYNQY 9 Unmodified _YPQPSYNQY_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2565307617188 2 580.256371 1158.49819 0.58086 0.00033705 -0.79541 -0.00046154 -0.21456 -0.0001245 580.2556642228823 44.768 0.51484 39.916 39.648 40.162 -4.852 87 39 3 0 0 0 0.06294 2 27388 27256;27388 41.84 28.332 1 38532000 79652 2302;16103 53312 54439 92705;92706 92706 -0.07472028178699475 YPQQIEPSF 9 Unmodified _YPQQIEPSF_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.768798828125 2 554.769114 1107.52368 -0.27258 -0.00015122 -0.95474 -0.00052966 -1.2273 -0.00068088 554.7688478158462 55.666 0.60706 55.666 55.262 55.869 0 111 42 3 0 0 0 0.015445 3 30943 30837;30943;31051 68.081 35.295 1 35835000 79653 3754 53313 54440 92707;92708;92709 92708 -0.025785536562807465 YPQQIEPSF 9 Unmodified _YPQQIEPSF_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.767578125 2 554.769114 1107.52368 -0.69831 -0.0003874 -0.80361 -0.00044582 -1.5019 -0.00083322 554.76889719899 56.263 0.28743 55.777 55.654 55.941 -0.48554 23 14 2 0 0 0 0.15471 1 30526 30526 27.629 7.2143 1 7270500 79654 3754 53313 54440 92710 92710 -0.025785536562807465 YPQQIEPSF 9 Unmodified _YPQQIEPSF_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7692260742188 2 554.769114 1107.52368 0.57238 0.00031754 0.15937 8.8416E-05 0.73176 0.00040596 554.769147529343 67.092 0.58355 66.609 66.355 66.938 -0.48323 57 26 3 0 0 0 0.48152 1 36673 36673 8.5933 0.68312 1 7103900 79655 3754 53313 54440 92711 92711 -0.025785536562807465 YPQQIEPSF 9 Unmodified _YPQQIEPSF_ 0 0 0 ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B ENSG00000124171|ENST00000371610|PARD6B MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7705688476562 2 554.769114 1107.52368 1.0018 0.00055575 1.2898 0.00071556 2.2916 0.0012713 554.7698644158505 63.493 0.39262 57.317 57.13 57.523 -6.1757 72 22 4 0 0 0 0.031062 1 41068 41068 54.774 25.692 1 112730000 79656 3754 53313 54440 92712 92712 -0.025785536562807465 YPQQPPLSAD 10 Unmodified _YPQQPPLSAD_ 0 0 0 REV__nc|ENSG00000185359|O14964-2|HGS REV__nc|ENSG00000185359|O14964-2|HGS MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2738647460938 2 558.272021 1114.52949 0.38581 0.00021539 0.68107 0.00038022 1.0669 0.00059561 558.2723196186242 93.238 1.1022 87.062 86.74 87.842 -6.1757 124 72 2 0 0 0 0.38092 1 61643 61643 22.736 2.2827 1 29992000 + 79657 23497 53314 54441 92713 92713 -0.023194551446067635 YPQRCVCY 8 Carbamidomethyl (C) _YPQRC(Carbamidomethyl (C))VCY_ YPQRC(0.5)VC(0.5)Y YPQRC(0)VC(0)Y 0 1 0 REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A REV__nc|ENSG00000006459|Q6ZMT4-2|KDM7A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7356567382812 2 544.736237 1087.45792 -0.43728 -0.0002382 -0.20788 -0.00011324 -0.64516 -0.00035144 544.7364164438521 34.804 0.7245 34.804 34.365 35.09 0 57 37 2 0 0 0 0.28922 1 18328 18328 56.541 18.567 2 3793400 + 79658 16990 53315 54442 92714 92714 1031;1032 -0.08230989374487763 YPQTTIRKY 9 Unmodified _YPQTTIRKY_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.5496215820312 3 390.548629 1168.62406 -0.34557 -0.00013496 1.8272 0.00071362 1.4817 0.00057866 390.54935916522965 23.292 0.30056 23.292 23.126 23.427 0 30 14 3 0 0 0 0.4887 1 11858 11858 8.4443 5.8131 1 924230 79659 3785 53316 54443 92715 92715 0.04649103397377985 YPQTTIRKY 9 Unmodified _YPQTTIRKY_ 0 0 0 nc|ENSG00000124429|Q8WVV4-1|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-3|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B nc|ENSG00000124429|Q8WVV4-1|POF1B MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 390.548629 1168.62406 0.44698 0.00017457 1.9076 0.00074503 2.3546 0.0009196 390.54918832232664 26.127 0.3738 23.176 22.984 23.358 -2.9511 -0.058065 5.1501E-05 NaN 8.4443 38 21 2 NaN NaN NaN NaN 0 NaN NaN 0 19310000 79660 3785 53316 54443 0.04649103397377985 YPQVPSSGY 9 Unmodified _YPQVPSSGY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 499.2340698242188 2 499.234907 996.455261 NaN NaN NaN NaN NaN NaN NaN 41.348 1 41.348 40.848 41.848 0 0 0 0 0.12337 1 22291 22291 39.957 20.518 1 79661 5036 53317 54444 92716 92716 -0.04310798236133451 YPQVPSSGY 9 Unmodified _YPQVPSSGY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 499.2356872558594 2 499.234907 996.455261 0.97262 0.00048557 1.0276 0.000513 2.0002 0.00099857 499.2358501345966 48.298 0.45492 43.064 42.808 43.263 -5.2339 61 27 3 0 0 0 0.020973 2 29947 29947;30071 62.573 26.446 1 48224000 79662 5036 53317 54444 92717;92718 92717 -0.04310798236133451 YPQVPSSGY 9 Unmodified _YPQVPSSGY_ 0 0 0 ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 ENSG00000138279|ENST00000372921|ANXA7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 997.4634399414062 1 997.462538 996.455261 0.70813 0.00070633 0.76701 0.00076506 1.4751 0.0014714 997.4634249472024 48.289 0.36493 43.055 42.851 43.216 -5.2339 32 21 2 0 0 0 0.0017364 2 29977 29977;30107 134.3 90.437 1 10772000 79663 5036 53317 54444 92719;92720 92719 -0.04310798236133451 YPQWDPKD 8 Unmodified _YPQWDPKD_ 0 0 0 REV__ENSG00000140943|ENST00000343411|MBTPS1 REV__ENSG00000140943|ENST00000343411|MBTPS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7404174804688 2 524.740357 1047.46616 -0.17267 -9.0606E-05 0.0076042 3.9902E-06 -0.16506 -8.6615E-05 524.7401719439372 34.763 0.55549 34.763 34.422 34.977 0 37 28 2 0 0 0 0.67481 2 18333 18333;18446 19.439 2.4967 1 2199500 + 79664 20501 53318 54445 92721;92722 92721 -0.055673958618626784 YPQYVIEY 8 Unmodified _YPQYVIEY_ 0 0 0 ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 ENSG00000105939|ENST00000242351|ZC3HAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7618408203125 2 537.760758 1073.50696 0.17765 9.5535E-05 0.040469 2.1763E-05 0.21812 0.0001173 537.7602833897113 61.784 0.33112 61.784 61.62 61.951 0 30 14 3 0 0 0 0.61462 1 34425 34425 24.674 15.326 1 3865400 79665 2379 53319 54446 92723 92723 -0.02685054542234866 YPRADTGLF 9 Unmodified _YPRADTGLF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.2644653320312 2 520.263999 1038.51345 0.47127 0.00024518 0.25807 0.00013427 0.72934 0.00037945 520.2640498351402 49.286 0.46637 48.914 48.673 49.139 -0.37171 69 22 4 0 0 0 0.11784 2 26431 26431;26536 31.268 5.8822 1 33686000 79666 4959 53320 54447 92724;92725 92724 -0.00427116590890364 YPRADTGLF 9 Unmodified _YPRADTGLF_ 0 0 0 nc|ENSG00000137699|Q14134-2|TRIM29;ENSG00000137699|ENST00000341846|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 nc|ENSG00000137699|Q14134-2|TRIM29 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 520.263999 1038.51345 0.20604 0.0001072 0.0035033 1.8226E-06 0.20955 0.00010902 520.2638992962634 48.944 0.29554 48.901 48.753 49.049 -0.04369 -0.053093 0.00033119 NaN 31.268 21 14 2 NaN NaN NaN NaN 0 NaN NaN 0 1109300 79667 4959 53320 54447 -0.00427116590890364 YPREELTRIVR 11 Unmodified _YPREELTRIVR_ 0 0 0 ENSG00000172716|ENST00000685675|SLFN11 ENSG00000172716|ENST00000685675|SLFN11 ENSG00000172716|ENST00000685675|SLFN11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 358.7076110839844 4 358.707126 1430.7994 1.8816 0.00067493 -0.74545 -0.0002674 1.1361 0.00040754 358.70689854454383 21.428 0.49101 18.693 18.485 18.976 -2.7348 151 40 5 0 0 0 0.69838 1 11532 11532 4.4062 1.0865 1 79332000 79668 8243 53321 54448 92726 92726 0.10122898191571039 YPRERARAR 9 Unmodified _YPRERARAR_ 0 0 0 ENST00000253233.5_1_12:123717606-123717849:+|nuORF ENST00000253233.5_1_12:123717606-123717849:+|nuORF ENST00000253233.5_1_12:123717606-123717849:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 391.8902893066406 3 392.22325 1173.64792 NaN NaN NaN NaN NaN NaN NaN 41.522 1 36.914 36.414 37.414 -4.6079 0 0 0 0.7453 1 24946 24946 4.897 0 1 79669 11158 53322 54449 92727 92727 0.06804381674396609 YPRERTHVT 9 Unmodified _YPRERTHVT_ 0 0 0 REV__ENSG00000185670|ENST00000394807|ZBTB3 REV__ENSG00000185670|ENST00000394807|ZBTB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.805908203125 2 579.804354 1157.59415 0.15073 8.7391E-05 2.4131 0.0013991 2.5638 0.0014865 579.805657610162 46.933 0.30025 46.933 46.781 47.081 0 21 14 2 0 0 0 0.32871 1 25667 25667 15.847 5.0233 1 5805900 + 79670 23519 53323 54450 92728 92728 0.021661644520236223 YPRGGSSEIAF 11 Unmodified _YPRGGSSEIAF_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.2897338867188 2 592.290745 1182.56694 NaN NaN NaN NaN NaN NaN NaN 44.056 1 44.056 43.556 44.556 0 0 0 0 0.11322 1 23958 23958 59.368 19.419 1 79671 663 53324 54451 92729 92729 -0.017043638790028126 YPRGGSSEIAF 11 Unmodified _YPRGGSSEIAF_ 0 0 0 ENSG00000042445|ENST00000295802|RETSAT;nc|ENSG00000042445|Q6NUM9-2|RETSAT ENSG00000042445|ENST00000295802|RETSAT ENSG00000042445|ENST00000295802|RETSAT MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.2901611328125 2 592.290745 1182.56694 0.52966 0.00031371 0.2392 0.00014168 0.76886 0.00045539 592.290788460927 49.083 0.69649 43.687 43.371 44.068 -5.3961 79 44 2 0 0 0 0.0020944 3 30780 30507;30643;30780 87.258 39.51 1 65483000 79672 663 53324 54451 92730;92731;92732 92732 -0.017043638790028126 YPRGHHAWF 9 Unmodified _YPRGHHAWF_ 0 0 0 ENST00000483767.5_1_1:880076-882054:-|nuORF ENST00000483767.5_1_1:880076-882054:-|nuORF ENST00000483767.5_1_1:880076-882054:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.7832641601562 2 585.783225 1169.5519 NaN NaN NaN NaN NaN NaN NaN 10.904 1 10.904 10.404 11.404 0 0 0 0 0.8622 1 5172 5172 0 0 1 79673 14136 53325 54452 92733 92733 -0.02609766165687688 YPRGVRYILF 10 Unmodified _YPRGVRYILF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 428.5804138183594 3 428.580152 1282.71863 0.36525 0.00015654 -0.20504 -8.7878E-05 0.1602 6.866E-05 428.58013227502965 61.387 0.37724 61.355 61.155 61.532 -0.032787 45 18 3 0 0 0 0.49559 2 33462 33462;33564 16.566 0 1 16579000 79674 3235 53326 54453 92734;92735 92734 0.08857661939350692 YPRGVRYILF 10 Unmodified _YPRGVRYILF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 642.3675537109375 2 642.36659 1282.71863 0.2851 0.00018314 0.7126 0.00045775 0.9977 0.00064089 642.3676623353 93.515 0.27319 87.339 87.178 87.451 -6.1757 21 17 2 0 0 0 0.03037 2 61818 61818;61962 61.357 39.611 1 7112500 79675 3235 53326 54453 92736;92737 92736 0.08857661939350692 YPRGVRYILF 10 Unmodified _YPRGVRYILF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 428.58056640625 3 428.580152 1282.71863 0.57235 0.0002453 0.00040682 1.7435E-07 0.57275 0.00024547 428.5800892401281 93.47 0.43675 87.295 87.133 87.57 -6.1757 71 28 3 0 0 0 0.32493 2 61882 61882;62019 26.021 4.4306 1 26132000 79676 3235 53326 54453 92738;92739 92738 0.08857661939350692 YPRGVRYILF 10 Unmodified _YPRGVRYILF_ 0 0 0 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 ENSG00000116663|ENST00000376753|FBXO6 MSMS AL20221201_MKP_PDAC_01 4 428.5789489746094 3 428.580152 1282.71863 NaN NaN NaN NaN NaN NaN NaN 93.303 1 87.127 86.627 87.627 -6.1757 0 0 0 0.57388 1 61748 61748 22.658 0 1 79677 3235 53326 54453 92740 92740 0.08857661939350692 YPRHISMENF 10 Unmodified _YPRHISMENF_ 0 0 0 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 ENSG00000103351|ENST00000576634|CLUAP1 MSMS AL20221201_MKP_PDAC_01 4 431.8740539550781 3 431.873007 1292.59719 NaN NaN NaN NaN NaN NaN NaN 44.873 1 40.021 39.521 40.521 -4.852 0 0 0 0.77204 1 27449 27449 13.519 6.0416 1 79678 2130 53327 54454 92741 92741 -0.037403284854690355 YPRIEESGF 9 Unmodified _YPRIEESGF_ 0 0 0 REV__nc|ENSG00000120656|Q16514-2|TAF12 REV__nc|ENSG00000120656|Q16514-2|TAF12 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.789306640625 2 549.266739 1096.51892 0.43714 0.00024011 0.56088 0.00030807 0.99803 0.00054818 549.2674376034655 46.727 0.21188 46.727 46.607 46.819 0 18 9 2 0 0 0 0.18882 1 25516 25516 15.847 5.7733 1 2303000 + 79679 19251 53328 54455 92742 92742 -0.025474377990576613 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 421.8874816894531 3 421.887533 1262.64077 -0.26623 -0.00011232 0.33168 0.00013993 0.065449 2.7612E-05 421.8876425024683 40.537 0.4818 40.537 40.276 40.758 0 73 25 4 0 0 0 0.36296 2 21843 21725;21843 25.997 21.881 1 30798000 79680 8006 53329 54456 92743;92744 92744 0.019956042833200627 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.327392578125 2 632.327662 1262.64077 -0.17039 -0.00010774 0.60748 0.00038413 0.43709 0.00027638 632.3274841838471 40.528 0.31692 40.528 40.37 40.687 0 23 16 2 0 0 0 0.060508 1 21791 21791 55.503 35.088 1 2764600 79681 8006 53329 54456 92745 92745 0.019956042833200627 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.327392578125 2 632.327662 1262.64077 0.016361 1.0346E-05 0.10945 6.9209E-05 0.12581 7.9555E-05 632.3277201521993 40.966 0.38527 40.663 40.502 40.887 -0.30304 28 18 2 0 0 0 0.17714 1 21677 21677 36.506 24.266 1 5174600 79682 8006 53329 54456 92746 92746 0.019956042833200627 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.8876647949219 3 421.887533 1262.64077 0.31446 0.00013266 0.34102 0.00014387 0.65547 0.00027653 421.88767281868564 40.961 0.61169 40.658 40.397 41.009 -0.30304 88 29 4 0 0 0 0.20195 1 21682 21682 35.08 25.315 1 40260000 79683 8006 53329 54456 92747 92747 0.019956042833200627 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8882446289062 3 421.887533 1262.64077 0.91647 0.00038665 0.37668 0.00015892 1.2932 0.00054557 421.8877175528789 45.547 0.74343 40.592 40.32 41.064 -4.9549 155 49 4 0 0 0 0.17253 3 27821 27821;27959;28099 38.559 31.679 1 241740000 79684 8006 53329 54456 92748;92749;92750 92748 0.019956042833200627 YPRIPRDEAF 10 Unmodified _YPRIPRDEAF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.32861328125 2 632.327662 1262.64077 0.49224 0.00031126 0.83484 0.00052789 1.3271 0.00083915 632.3284272394311 45.59 0.59383 40.635 40.375 40.969 -4.9549 96 39 3 0 0 0 0.0044938 2 28089 27937;28089 100.09 50.536 1 50220000 79685 8006 53329 54456 92751;92752 92752 0.019956042833200627 YPRISHHGPLG 11 Unmodified _YPRISHHGPLG_ 0 0 0 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 REV__nc|ENSG00000129646|Q9H0J4|QRICH2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.3289184570312 2 617.327996 1232.64144 NaN NaN NaN NaN NaN NaN NaN 73.549 1 73.549 73.049 74.049 0 0 0 0 0.94165 1 40948 40948 1.3295 0.25807 1 + 79686 19677 53330 54457 92753 92753 0.034424437230200056 YPRIWNMP 8 Unmodified _YPRIWNMP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.7711181640625 2 538.770937 1075.52732 0.25131 0.0001354 0.68589 0.00036954 0.9372 0.00050493 538.771590396273 82.537 0.22563 82.537 82.41 82.635 0 14 8 2 0 0 0 0.80624 1 45819 45819 2.8892 0 1 283130 79687 5089 53331 54458 92754 92754 -0.007421623634172647 YPRIWNMP 8 Unmodified _YPRIWNMP_ 0 0 0 nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;nc|ENSG00000138688|Q2LD37-2|BLTP1;nc|ENSG00000138688|Q2LD37-5|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF nc|ENSG00000138688|Q2LD37-4|BLTP1 nc|ENSG00000138688|Q2LD37-4|BLTP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 538.770937 1075.52732 0.39569 0.00021319 -1.0139 -0.00054629 -0.61826 -0.0003331 538.7707968738335 83.079 0.16135 82.582 82.511 82.672 -0.49751 0.022244 -0.0013282 NaN 2.8892 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 253040 79688 5089 53331 54458 -0.007421623634172647 YPRKGRIAV 9 Unmodified _YPRKGRIAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.8856506347656 3 353.885576 1058.6349 -0.040272 -1.4252E-05 0.84826 0.00030019 0.80799 0.00028594 353.885746724331 17.795 0.31339 17.8 17.621 17.934 0.0050564 42 22 4 0 0 0 0.41742 1 9005 9005 11.495 4.2055 1 1755600 79689 1625 53332 54459 92755 92755 0.10792550562314318 YPRKGRIAV 9 Unmodified _YPRKGRIAV_ 0 0 0 nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2;ENSG00000147647|ENST00000351513|DPYS;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;ENSG00000072832|ENST00000324989|CRMP1 nc|ENSG00000092964|Q16555-2|DPYSL2 nc|ENSG00000092964|Q16555-2|DPYSL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 353.8864135742188 3 353.885576 1058.6349 1.6031 0.0005673 -0.064449 -2.2808E-05 1.5386 0.00054449 353.8855192863901 19.122 0.4734 16.465 16.256 16.73 -2.6564 96 32 4 0 0 0 0.5029 2 10020 10020;10122 16.149 12.553 1 25978000 79690 1625 53332 54459 92756;92757 92756 0.10792550562314318 YPRKYDAKF 9 Unmodified _YPRKYDAKF_ 0 0 0 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.544677734375 3 396.545108 1186.61349 0.42408 0.00016816 -0.084579 -3.3539E-05 0.3395 0.00013463 396.5449421718931 24.58 0.35689 21.697 21.478 21.835 -2.8831 46 19 3 0 0 0 0.39143 1 13365 13365 12.873 2.722 1 7913900 79691 1368 53333 54460 92758 92758 0.027651207429016722 YPRLKVLAF 9 Unmodified _YPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 369.5624084472656 3 369.56221 1105.6648 0.24244 8.9597E-05 -0.8619 -0.00031852 -0.61946 -0.00022893 369.56186537258293 61.298 0.51662 61.254 60.987 61.504 -0.04351 64 25 3 0 0 0 0.21643 1 33497 33497 21.537 9.2963 1 15881000 79692 3468 53334 54461 92759 92759 0.11619489507643266 YPRLKVLAF 9 Unmodified _YPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 369.8966369628906 3 369.56221 1105.6648 0.73186 0.00027047 0.41293 0.0001526 1.1448 0.00042307 369.56231290952155 93.091 0.32684 86.915 86.74 87.067 -6.1757 54 22 3 0 0 0 0.21643 2 61518 61518;61653 21.537 7.9936 1 96711000 79693 3468 53334 54461 92760;92761 92760 0.11619489507643266 YPRLKVLAF 9 Unmodified _YPRLKVLAF_ 0 0 0 nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENSG00000119777|ENST00000238788|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF nc|ENSG00000119777|Q6NUQ4-2|TMEM214 nc|ENSG00000119777|Q6NUQ4-2|TMEM214 MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.3411254882812 2 553.839677 1105.6648 0.16664 9.2293E-05 1.1326 0.00062729 1.2993 0.00071958 553.8403410256329 93.1 0.26765 86.925 86.788 87.056 -6.1757 39 18 3 0 0 0 0.017075 1 61550 61550 85.357 58.473 1 40472000 79694 3468 53334 54461 92762 92762 0.11619489507643266 YPRPQNVEY 9 Unmodified _YPRPQNVEY_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000457871.2_1_12:6459074-6463691:-|nuORF;ENST00000366131.6_1_12:6462937-6464599:-|nuORF nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2847900390625 2 583.285463 1164.55637 -1.1456 -0.0006682 0.014102 8.2256E-06 -1.1315 -0.00065997 583.2853069516249 32.526 0.56888 32.526 32.242 32.811 0 91 32 4 0 0 0 0.044011 3 17097 16883;16988;17097 47.749 27.295 1 28494000 79695 2778 53335 54462 92763;92764;92765 92765 -0.01932346533430973 YPRPSPAPAH 10 Unmodified _YPRPSPAPAH_ 0 0 0 REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF REV__ENST00000534837.5_1_12:6803716-6804310:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8435668945312 2 546.78289 1091.55123 0.14045 7.6795E-05 -0.079762 -4.3612E-05 0.060686 3.3182E-05 546.7828717457242 33.897 0.2198 33.926 33.837 34.057 0.028934 23 9 3 0 0 0 0.6606 1 17854 17854 7.2892 2.0586 1 3906600 + 79696 28512 53336 54463 92766 92766 0.009113943945976644 YPRPSSGTL 9 Unmodified _YPRPSSGTL_ 0 0 0 nc|ENSG00000136848|Q5VWQ8-3|DAB2IP;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP nc|ENSG00000136848|Q5VWQ8-3|DAB2IP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2576904296875 2 489.256174 976.497795 -0.22093 -0.00010809 1.3344 0.00065285 1.1134 0.00054476 489.25690914053246 29.47 0.22785 29.47 29.262 29.489 0 15 10 2 0 0 0 0.085319 1 15235 15235 36.506 5.8697 1 2077100 79697 4867 53337 54464 92767 92767 0.00860596892096055 YPRQLESLIRL 11 Unmodified _YPRQLESLIRL_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.2734680175781 3 463.273388 1386.79833 0.48421 0.00022432 -0.0060952 -2.8237E-06 0.47811 0.0002215 463.27345898469156 68.055 0.52513 68.08 67.775 68.3 0.025154 57 25 3 0 0 0 0.010954 1 37342 37342 66.84 54.612 1 4973800 79698 2229 53338 54465 92768 92768 0.120406838226927 YPRQLESLIRL 11 Unmodified _YPRQLESLIRL_ 0 0 0 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 ENSG00000104738|ENST00000649973|MCM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.2732543945312 3 463.273388 1386.79833 -0.0014726 -6.8223E-07 0.91259 0.00042278 0.91111 0.00042209 463.27373572671524 93.215 0.23587 87.039 86.903 87.139 -6.1757 37 18 3 0 0 0 0.0012693 1 61632 61632 81.642 57.678 1 38630000 79699 2229 53338 54465 92769 92769 0.120406838226927 YPRQQLLTL 9 Unmodified _YPRQQLLTL_ 0 0 0 ENSG00000071539|ENST00000166345|TRIP13 ENSG00000071539|ENST00000166345|TRIP13 ENSG00000071539|ENST00000166345|TRIP13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.3304443359375 2 566.329673 1130.64479 0.62736 0.00035529 0.44144 0.00025 1.0688 0.00060529 566.3297363171226 56.684 0.26228 56.616 56.497 56.76 -0.068737 16 12 2 0 0 0 0.13231 1 30868 30868 32.305 3.8186 1 2333100 79700 1057 53339 54466 92770 92770 0.08469693777033172 YPRRFSTL 8 Unmodified _YPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 520.288330078125 2 520.287808 1038.56106 -0.25976 -0.00013515 -0.098121 -5.1051E-05 -0.35788 -0.0001862 520.2876777614116 31.838 0.23748 31.868 31.732 31.969 0.030104 16 10 2 0 0 0 0.38465 1 16695 16695 46.021 3.9264 1 2727700 79701 12908 53340 54467 92771 92771 0.043325824000021385 YPRRFSTL 8 Unmodified _YPRRFSTL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.2865600585938 2 520.287808 1038.56106 0.97686 0.00050825 -3.6756 -0.0019124 -2.6988 -0.0014041 520.285173507075 35.599 0.46046 31.407 31.218 31.678 -4.1928 38 28 2 0 0 0 0.27285 1 20693 20693 58.679 28.042 1 9493000 79702 12908 53340 54467 92772 92772 0.043325824000021385 YPRRFSTLL 9 Unmodified _YPRRFSTLL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 576.8298950195312 2 576.82984 1151.64513 1.1434 0.00065954 -1.0723 -0.00061854 0.071092 4.1008E-05 576.8295793803152 46.353 0.26883 46.32 46.203 46.472 -0.033421 22 12 2 0 0 0 0.34134 1 24939 24939 10.824 0 1 4167200 79703 12908 53341 54468 92773 92773 0.07537113496914571 YPRRFSTLL 9 Unmodified _YPRRFSTLL_ 0 0 0 ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF ENST00000403825.7_1_7:112090541-112090697:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8889770507812 3 384.888986 1151.64513 1.275 0.00049074 -0.85236 -0.00032806 0.42265 0.00016267 384.8887464410413 80.158 0.60083 73.982 73.677 74.278 -6.1757 50 35 2 0 0 0 0.20507 1 52586 52586 22.658 4.7949 1 17463000 79704 12908 53341 54468 92774 92774 0.07537113496914571 YPRRRRPG 8 Unmodified _YPRRRRPG_ 0 0 0 ENSG00000164976|ENST00000297625|MYORG;ENST00000297625.7_1_9:34372875-34372941:-|nuORF ENSG00000164976|ENST00000297625|MYORG ENSG00000164976|ENST00000297625|MYORG MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.208984375 3 353.209053 1056.60533 NaN NaN NaN NaN NaN NaN NaN 15.494 1 15.48 14.98 15.98 -0.014067 0 0 0 0.97444 1 7607 7607 0 0 1 79705 7275 53342 54469 92775 92775 0.07929031336834669 YPRRYHVSY 9 Unmodified _YPRRYHVSY_ 0 0 0 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.2129821777344 3 414.21224 1239.61489 0.37013 0.00015331 0.43982 0.00018218 0.80995 0.00033549 414.21236291943467 23.293 0.39279 20.515 20.397 20.79 -2.7784 65 31 4 0 0 0 0.08691 3 12655 12544;12574;12655 27.223 15.747 1 14109000 79706 7933 53343 54470 92776;92777;92778 92778 0.004667548317002002 YPRRYHVSY 9 Unmodified _YPRRYHVSY_ 0 0 0 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 ENSG00000169967|ENST00000682094|MAP3K2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 414.21224 1239.61489 -0.37302 -0.00015451 0.025506 1.0565E-05 -0.34751 -0.00014394 414.2119243326023 20.365 0.12556 20.393 20.313 20.438 0.028357 -0.056297 -0.00056096 NaN 27.223 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 541970 79707 7933 53343 54470 0.004667548317002002 YPRSDVDLY 9 Unmodified _YPRSDVDLY_ 0 0 0 nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2723388671875 2 564.272021 1126.52949 0.28045 0.00015825 0.63454 0.00035805 0.91498 0.0005163 564.2722413110653 39.827 0.41496 39.827 39.595 40.01 0 36 20 2 0 0 0 0.18255 1 21370 21370 32.786 7.3864 1 10422000 79708 2743 53344 54471 92779 92779 -0.02871455144600077 YPRSDVDLY 9 Unmodified _YPRSDVDLY_ 0 0 0 nc|ENSG00000256950|O00233-2|PSMD9;ENSG00000110801|ENST00000541212|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 nc|ENSG00000256950|O00233-2|PSMD9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.27294921875 2 564.272021 1126.52949 0.64079 0.00036158 0.28493 0.00016078 0.92573 0.00052236 564.2719012843157 45.413 0.42975 40.458 40.284 40.713 -4.9549 47 29 2 0 0 0 0.082934 1 27924 27924 47.749 3.8904 1 27685000 79709 2743 53344 54471 92780 92780 -0.02871455144600077 YPRSILTSL 9 Unmodified _YPRSILTSL_ 0 0 0 nc|ENSG00000122779|O15164-2|TRIM24;ENSG00000122779|ENST00000343526|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 nc|ENSG00000122779|O15164-2|TRIM24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.303466796875 2 525.303124 1048.5917 0.24147 0.00012685 0.46851 0.00024611 0.70998 0.00037295 525.3033661119565 62.164 0.37205 62.131 61.848 62.22 -0.032787 43 18 3 0 0 0 0.029718 1 33872 33872 55.503 0.72919 1 11468000 79710 3661 53345 54472 92781 92781 0.06934315994362805 YPSEFATY 8 Unmodified _YPSEFATY_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 977.4277954101562 1 977.42509 976.417813 0.51595 0.0005043 0.17133 0.00016746 0.68728 0.00067177 977.4250674098248 49.608 0.22896 49.608 49.487 49.716 0 16 9 2 0 0 0 0.11943 1 27273 27273 93.883 37.342 1 2031200 79711 5349 53346 54473 92782 92782 -0.0713388950175613 YPSEFATY 8 Unmodified _YPSEFATY_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 489.2173767089844 2 489.216183 976.417813 NaN NaN NaN NaN NaN NaN NaN 49.614 1 49.614 49.114 50.114 0 0 0 0 0.44807 1 27313 27313 46.921 14.804 1 79712 5349 53346 54473 92783 92783 -0.0713388950175613 YPSEFATYL 9 Unmodified _YPSEFATYL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.757568359375 2 545.758215 1089.50188 0.65572 0.00035786 -0.41364 -0.00022575 0.24207 0.00013211 545.7580287018293 73.4 0.55704 73.4 73.229 73.786 0 62 27 3 0 0 0 0.28047 1 40847 40847 18.135 0 1 3776100 79713 5349 53347 54474 92784 92784 -0.03929358404866434 YPSEFATYL 9 Unmodified _YPSEFATYL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.7584838867188 2 545.758215 1089.50188 0.52398 0.00028597 -0.7535 -0.00041123 -0.22952 -0.00012526 545.7580856826798 73.911 0.53249 73.435 73.208 73.741 -0.47588 67 24 4 0 0 0 0.038285 1 40490 40490 50.855 6.448 1 6176700 79714 5349 53347 54474 92785 92785 -0.03929358404866434 YPSEFATYL 9 Unmodified _YPSEFATYL_ 0 0 0 ENST00000584377.5_1_17:80203885-80211156:-|nuORF;ENST00000581241.5_1_17:80206597-80211051:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENST00000581108.5_1_17:80207265-80210400:-|nuORF;ENST00000578904.1_1_17:80208040-80213403:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF ENST00000584377.5_1_17:80203885-80211156:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.7586669921875 2 545.758215 1089.50188 0.93776 0.00051179 -0.60916 -0.00033245 0.3286 0.00017934 545.7581219409321 81.215 0.53793 75.039 74.75 75.288 -6.1757 85 30 4 0 0 0 0.038285 1 53242 53242 50.855 12.704 1 68182000 79715 5349 53347 54474 92786 92786 -0.03929358404866434 YPSETTVKY 9 Unmodified _YPSETTVKY_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.2686767578125 2 544.268947 1086.52334 -0.18933 -0.00010305 0.63776 0.00034711 0.44843 0.00024407 544.2693723778771 30.889 0.22364 30.889 30.771 30.995 0 26 10 3 0 0 0 0.040337 1 16057 16057 53.404 15.43 1 6978100 79716 4749 53348 54475 92787 92787 -0.01645973376139409 YPSETTVKY 9 Unmodified _YPSETTVKY_ 0 0 0 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 ENSG00000135862|ENST00000258341|LAMC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2678833007812 2 544.268947 1086.52334 0.61125 0.00033268 -1.8608 -0.0010128 -1.2495 -0.00068008 544.2679107586022 35.257 0.30733 31.162 30.991 31.299 -4.0951 34 18 3 0 0 0 0.033466 1 20395 20395 65.474 19.453 1 17267000 79717 4749 53348 54475 92788 92788 -0.01645973376139409 YPSFAGPPIV 10 Unmodified _YPSFAGPPIV_ 0 0 0 REV__nc|ENSG00000145147|O94813-3|SLIT2 REV__nc|ENSG00000145147|O94813-3|SLIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.27880859375 2 524.279118 1046.54368 -0.39331 -0.0002062 -1.0088 -0.00052889 -1.4021 -0.00073509 524.2788022733124 30.334 0.48745 30.334 30.12 30.607 0 53 23 3 0 0 0 0.33553 1 15792 15792 25.399 4.9848 1 2793900 + 79718 20755 53349 54476 92789 92789 0.02227242074309288 YPSGESAGIEY 11 Unmodified _YPSGESAGIEY_ 0 0 0 REV__ENSG00000004777|ENST00000007510|ARHGAP33 REV__ENSG00000004777|ENST00000007510|ARHGAP33 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7089233398438 2 586.758943 1171.50333 0.15626 9.1689E-05 2.4829 0.0014569 2.6392 0.0015486 586.7599412913937 59.018 0.19843 59.018 58.924 59.123 0 17 8 3 0 0 0 0.30049 1 32849 32849 6.2058 0 1 971920 + 79719 16949 53350 54477 92790 92790 -0.07555769106738808 YPSGFCLLSI 10 Unmodified _YPSGFCLLSI_ 0 0 0 ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB ENSG00000198752|ENST00000361246|CDC42BPB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7787475585938 2 550.27826 1098.54197 0.36068 0.00019847 -2.4966 -0.0013738 -2.1359 -0.0011753 550.2747681491667 39.758 0.1531 39.758 39.72 39.873 0 10 7 2 0 0 0 0.33553 1 21341 21341 25.399 0 1 3057200 79720 10141 53351 54478 92791 92791 -0.0033613500593219214 YPSICPRL 8 Carbamidomethyl (C) _YPSIC(Carbamidomethyl (C))PRL_ YPSIC(1)PRL YPSIC(67)PRL 0 1 0 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 ENSG00000102699|ENST00000381989|PARP4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.2633972167969 2 503.262945 1004.51134 0.68333 0.00034389 -0.28244 -0.00014214 0.40089 0.00020175 503.26315082980517 56.402 0.45889 50.425 50.156 50.615 -5.9769 40 26 2 0 0 0 0.21583 1 35952 35952 67.344 18.998 1 16811000 79721 2059 53352 54479 92792 92792 202 0.00926131399694441 YPSIHITAY 9 Unmodified _YPSIHITAY_ 0 0 0 ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL ENSG00000138078|ENST00000409411|PREPL ENSG00000138078|ENST00000409411|PREPL MSMS AL20221201_MKP_PDAC_01 4 532.7740478515625 2 532.7742 1063.53385 NaN NaN NaN NaN NaN NaN NaN 60.369 1 54.254 53.754 54.754 -6.1147 0 0 0 0.18753 1 38842 38842 32.305 2.0807 1 79722 5013 53353 54480 92793 92793 0.004620540689529662 YPSINPPTL 9 Unmodified _YPSINPPTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.2687072753906 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 66.214 1 65.73 65.23 66.23 -0.48323 0 0 0 0.035065 1 36152 36152 64.236 15.89 1 79723 16250 53354 54481 92794 92794 0.022706516946755073 YPSINPPTL 9 Unmodified _YPSINPPTL_ 0 0 0 nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 nc|ENSG00000144580|Q92600-3|CNOT9 MSMS AL20221201_MKP_PDAC_01 4 501.2682495117188 2 501.26875 1000.52295 NaN NaN NaN NaN NaN NaN NaN 72.882 1 66.706 66.206 67.206 -6.1757 0 0 0 0.025979 1 47670 47670 71.134 22.788 1 79724 16250 53354 54481 92795 92795 0.022706516946755073 YPSKQFDVL 9 Unmodified _YPSKQFDVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 548.7877807617188 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 56.789 1 50.813 50.313 51.313 -5.9769 0 0 0 0.054801 1 36268 36268 55.503 13.663 1 79725 4010 53355 54482 92796 92796 0.016103232404248047 YPSKQFDVL 9 Unmodified _YPSKQFDVL_ 0 0 0 nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19545799-19546215:-|nuORF nc|ENSG00000127463|Q8N766-4|EMC1 nc|ENSG00000127463|Q8N766-4|EMC1 MSMS AL20221201_MKP_PDAC_01 4 548.7879638671875 2 548.787307 1095.56006 NaN NaN NaN NaN NaN NaN NaN 56.967 1 50.99 50.49 51.49 -5.9769 0 0 0 0.055406 1 36398 36398 55.235 25.01 1 79726 4010 53355 54482 92797 92797 0.016103232404248047 YPSKSILL 8 Unmodified _YPSKSILL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 460.7769165039062 2 460.776211 919.537869 0.94298 0.0004345 -0.41053 -0.00018916 0.53244 0.00024534 460.7759849759993 49.789 0.44891 49.789 49.56 50.009 0 52 20 3 0 0 0 0.36898 2 27365 27365;27472 47.749 0 1 10310000 79727 7822 53356 54483 92798;92799 92798 0.07488143562670757 YPSKSILL 8 Unmodified _YPSKSILL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 460.77685546875 2 460.776211 919.537869 1.1212 0.00051662 -0.29504 -0.00013595 0.82616 0.00038067 460.7759911022053 49.705 0.53503 49.657 49.392 49.927 -0.048824 68 26 3 0 0 0 0.33377 2 26983 26770;26983 51.63 0 1 25121000 79728 7822 53356 54483 92800;92801 92801 0.07488143562670757 YPSKSILL 8 Unmodified _YPSKSILL_ 0 0 0 nc|ENSG00000168961|O00182-6|LGALS9;ENSG00000168961|ENST00000395473|LGALS9;nc|ENSG00000168961|O00182-3|LGALS9;nc|ENSG00000168961|O00182-2|LGALS9;ENST00000584386.5_1_17:25958291-25974145:+|nuORF;nc|ENSG00000168961|O00182-5|LGALS9;nc|ENSG00000168961|O00182-4|LGALS9;ENST00000486774.1_1_17:25972868-25974145:+|nuORF nc|ENSG00000168961|O00182-6|LGALS9 nc|ENSG00000168961|O00182-6|LGALS9 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.7767944335938 2 460.776211 919.537869 0.9738 0.00044871 0.18949 8.7313E-05 1.1633 0.00053602 460.77624882359856 54.9 0.74019 49.035 48.682 49.422 -5.8653 119 45 3 0 0 0 0.1875 4 34810 34677;34810;34940;35080 74.929 0 1 485130000 79729 7822 53356 54483 92802;92803;92804;92805 92803 0.07488143562670757 YPSKYPPDR 9 Unmodified _YPSKYPPDR_ 0 0 0 ENSG00000166342|ENST00000327305|NETO1;nc|ENSG00000166342|Q8TDF5-2|NETO1;nc|ENSG00000166342|Q8TDF5-1|NETO1 ENSG00000166342|ENST00000327305|NETO1 ENSG00000166342|ENST00000327305|NETO1 MSMS AL20221201_MKP_PDAC_01 4 561.7833862304688 2 561.782556 1121.55056 NaN NaN NaN NaN NaN NaN NaN 52.801 1 47.067 46.567 47.567 -5.7345 0 0 0 0.18753 1 33338 33338 32.305 2.0807 1 79730 7474 53357 54484 92806 92806 -0.005354450451250159 YPSLEPECF 9 Unmodified _YPSLEPECF_ 0 0 0 REV__ENST00000239906.9_1_5:137673809-137676949:+|nuORF REV__ENST00000239906.9_1_5:137673809-137676949:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 542.7395629882812 2 542.736425 1083.4583 NaN NaN NaN NaN NaN NaN NaN 85.588 1 79.413 78.913 79.913 -6.1757 0 0 0 0.3092 1 56381 56381 24.674 11.166 1 + 79731 24837 53358 54485 92807 92807 -0.08009291173652855 YPSLHEEALG 10 Unmodified _YPSLHEEALG_ 0 0 0 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 ENSG00000156009|ENST00000286482|MAGEA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2723388671875 2 558.272021 1114.52949 0.38581 0.00021539 0.68107 0.00038022 1.0669 0.00059561 558.2723196186242 93.238 1.1022 87.062 86.74 87.842 -6.1757 124 72 2 0 0 0 0.31022 1 61774 61774 26.884 0.61551 1 29992000 79732 6422 53359 54486 92808 92808 -0.02319455144629501 YPSLKSIL 8 Unmodified _YPSLKSIL_ 0 0 0 REV__nc|ENSG00000085433|O94967-2|WDR47 REV__nc|ENSG00000085433|O94967-2|WDR47 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 460.776123046875 2 460.776211 919.537869 0.69604 0.00032072 0.1199 5.5246E-05 0.81594 0.00037597 460.776209452765 50.08 0.63885 49.688 49.353 49.992 -0.3923 81 31 3 0 0 0 0.34916 1 26822 26822 49.933 4.2334 1 89819000 + 79733 17749 53360 54487 92809 92809 0.07488143562670757 YPSLNVTSF 9 Unmodified _YPSLNVTSF_ 0 0 0 nc|ENSG00000119523|Q9H553-2|ALG2;ENSG00000119523|ENST00000476832|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 nc|ENSG00000119523|Q9H553-2|ALG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2566528320312 2 514.258382 1026.50221 0.46504 0.00023915 0.90924 0.00046758 1.3743 0.00070673 514.2581896900682 71.687 0.36799 71.211 71.047 71.415 -0.47609 34 14 3 0 0 0 0.16226 1 39214 39214 26.884 7.6267 1 1518200 79734 3443 53361 54488 92810 92810 -0.009979386850091032 YPSLPAGDTY 10 Unmodified _YPSLPAGDTY_ 0 0 0 nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B nc|ENSG00000138802|O95487-2|SEC24B nc|ENSG00000138802|O95487-2|SEC24B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2525634765625 2 542.253297 1082.49204 0.80596 0.00043704 -0.5796 -0.00031429 0.22637 0.00012275 542.2529723645226 51.277 0.3084 51.277 51.167 51.475 0 22 13 2 0 0 0 0.017277 1 28309 28309 78.149 55.001 1 3251600 79735 5110 53362 54489 92811 92811 -0.04590546410236129 YPSLPTPLL 9 Unmodified _YPSLPTPLL_ 0 0 0 ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000272391|A8CG34|POM121C ENSG00000196313|ENST00000434423|POM121 ENSG00000196313|ENST00000434423|POM121 MSMS AL20221201_MKP_PDAC_01 4 500.789306640625 2 500.789318 999.564084 NaN NaN NaN NaN NaN NaN NaN 98.505 1 92.329 91.829 92.829 -6.1757 0 0 0 0.036587 1 65344 65344 63.563 9.9873 1 79736 9796 53363 54490 92812 92812 0.06428412734146605 YPSLYYPEM 9 Oxidation (M) _YPSLYYPEM(Oxidation (M))_ YPSLYYPEM(1) YPSLYYPEM(78) 0 0 1 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2584838867188 2 589.757358 1177.50016 -0.42436 -0.00025027 -1.2037 -0.0007099 -1.6281 -0.00096016 589.7565125076475 56.05 0.24994 56.05 55.934 56.184 0 19 11 2 0 0 0 0.010877 1 31165 31165 77.984 49.497 1 2645900 79737 1936 53364 54491 92813 92813 328 -0.0814873548513333 YPSLYYPEM 9 Oxidation (M) _YPSLYYPEM(Oxidation (M))_ YPSLYYPEM(1) YPSLYYPEM(78) 0 0 1 nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B nc|ENSG00000101224|P30305-3|CDC25B nc|ENSG00000101224|P30305-3|CDC25B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7568969726562 2 589.757358 1177.50016 -0.22353 -0.00013183 -1.2491 -0.00073665 -1.4726 -0.00086848 589.7561516064034 56.727 0.40759 56.242 56.136 56.543 -0.48554 39 19 3 0 0 0 0.010877 1 30807 30807 77.984 51.101 1 3031400 79738 1936 53364 54491 92814 92814 328 -0.0814873548513333 YPSMIDYTKN 10 Unmodified _YPSMIDYTKN_ 0 0 0 ENST00000341618.8_2_21:30547632-30547791:+|nuORF ENST00000341618.8_2_21:30547632-30547791:+|nuORF ENST00000341618.8_2_21:30547632-30547791:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2860107421875 2 616.286814 1230.55907 0.80862 0.00049834 -2.8168 -0.0017359 -2.0082 -0.0012376 616.2854499368334 47.329 0.2042 46.976 46.838 47.042 -0.3526 19 9 3 0 0 0 0.45406 1 25360 25360 21.537 4.4241 1 3837400 79739 11970 53365 54492 92815 92815 -0.046982591907863025 YPSNETLF 8 Unmodified _YPSNETLF_ 0 0 0 REV__ENSG00000117139|ENST00000367265|KDM5B REV__ENSG00000117139|ENST00000367265|KDM5B MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2059936523438 2 485.729458 969.444362 0.13301 6.4606E-05 -3.2938 -0.0015999 -3.1608 -0.0015353 485.72860757613915 56.918 0.21724 56.432 56.286 56.503 -0.48554 13 9 2 0 0 0 8.7369 1 30877 30877 5.2307 0.47466 1 899970 + 79740 19086 53366 54493 92816 92816 -0.04158200610424956 YPSNIFISF 9 Unmodified _YPSNIFISF_ 0 0 0 ENSG00000140006|ENST00000620954|WDR89 ENSG00000140006|ENST00000620954|WDR89 ENSG00000140006|ENST00000620954|WDR89 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2770385742188 2 544.276575 1086.5386 1.7173 0.00093468 -0.11082 -6.0319E-05 1.6065 0.00087436 544.276412240847 92.856 0.68549 92.881 92.671 93.356 0.025444 72 26 3 0 0 0 0.019303 1 51784 51784 64.236 24.279 1 12918000 79741 5204 53367 54494 92817 92817 -0.0012106178830890713 YPSPTVTWY 9 Unmodified _YPSPTVTWY_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-6|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MSMS AL20221201_MKP_PDAC_01 4 557.2686157226562 2 557.266207 1112.51786 NaN NaN NaN NaN NaN NaN NaN 46.467 1 41.386 40.886 41.886 -5.0805 0 0 0 0.7243 1 28706 28706 8.5933 1.304 1 79742 6400;16288 53368 54495 92818 92818 -0.03389652167948043 YPSPVATSY 9 Unmodified _YPSPVATSY_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MSMS AL20221201_MKP_PDAC_01 4 492.7384338378906 2 492.737283 983.460012 NaN NaN NaN NaN NaN NaN NaN 50.822 1 45.173 44.673 45.673 -5.649 0 0 0 0.080768 1 31926 31926 48.346 21.462 1 79743 3538 53369 54496 92819 92819 -0.032379140933926465 YPSPVPTSF 9 Unmodified _YPSPVPTSF_ 0 0 0 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 ENSG00000120738|ENST00000239938|EGR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 994.4873046875 1 994.488024 993.480748 0.48125 0.0004786 0.46596 0.00046339 0.94721 0.00094199 994.4879743342545 62.704 0.14403 62.218 62.1 62.244 -0.48617 10 6 2 0 0 0 0.0095811 1 34167 34167 81.613 41.656 1 1422300 79744 3538 53370 54497 92820 92820 -0.016253237137107135 YPSRASFHELY 11 Unmodified _YPSRASFHELY_ 0 0 0 nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 nc|ENSG00000196586|Q9UM54-5|MYO6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2225646972656 3 457.222693 1368.64625 0.69392 0.00031727 0.12811 5.8574E-05 0.82202 0.00037585 457.55694337080206 44.483 0.25513 39.631 39.504 39.759 -4.852 22 17 2 0 0 0 0.53099 1 27133 27133 14.838 5.0737 1 12475000 79745 9845 53371 54498 92821 92821 -0.023327169248432256 YPSRAVITTM 10 Oxidation (M) _YPSRAVITTM(Oxidation (M))_ YPSRAVITTM(1) YPSRAVITTM(41) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7969360351562 2 577.797349 1153.58014 -0.41295 -0.0002386 1.3917 0.00080414 0.97878 0.00056554 577.7973099362547 30.008 0.23287 30.008 29.867 30.1 0 24 10 3 0 0 0 0.14294 1 15559 15559 40.725 13.096 1 8486200 79746 3444 53372 54499 92822 92822 615 0.009497509086941136 YPSRAVITTM 10 Oxidation (M) _YPSRAVITTM(Oxidation (M))_ YPSRAVITTM(1) YPSRAVITTM(110) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7985229492188 2 577.797349 1153.58014 0.73801 0.00042642 0.40148 0.00023197 1.1395 0.0006584 577.797775762427 30.043 0.31296 29.962 29.792 30.105 -0.080429 38 11 5 0 0 0 0.0015532 2 15542 15542;15642 110.79 60.86 1 42831000 79747 3444 53372 54499 92823;92824 92823 615 0.009497509086941136 YPSRAVITTM 10 Oxidation (M) _YPSRAVITTM(Oxidation (M))_ YPSRAVITTM(1) YPSRAVITTM(82) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7959594726562 2 577.797349 1153.58014 0.2605 0.00015051 0.0065572 3.7887E-06 0.26705 0.0001543 577.797528976811 29.796 0.2089 29.826 29.712 29.921 0.030106 19 7 3 0 0 0 0.013158 1 15558 15558 81.915 55.647 1 5686000 79748 3444 53372 54499 92825 92825 615 0.009497509086941136 YPSRAVITTM 10 Oxidation (M) _YPSRAVITTM(Oxidation (M))_ YPSRAVITTM(1) YPSRAVITTM(100) 0 0 1 ENST00000585750.1_1_18:61011618-61022465:-|nuORF;ENSG00000119537|ENST00000645214|KDSR ENST00000585750.1_1_18:61011618-61022465:-|nuORF ENST00000585750.1_1_18:61011618-61022465:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7984008789062 2 577.797349 1153.58014 0.88441 0.00051101 -0.56292 -0.00032525 0.3215 0.00018576 577.7969699795322 34.348 0.44958 30.253 30.023 30.473 -4.0951 66 25 4 0 0 0 0.0042881 2 19697 19697;19815 100.71 60.759 1 86100000 79749 3444 53372 54499 92826;92827 92826 615 0.009497509086941136 YPSRIGSIINY 11 Unmodified _YPSRIGSIINY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.8436889648438 2 641.843145 1281.67174 -0.48527 -0.00031147 0.66387 0.0004261 0.1786 0.00011463 641.8439376857025 56.719 0.25422 56.233 56.136 56.39 -0.48554 28 12 3 0 0 0 0.072475 1 30805 30805 46.022 22.233 1 3494300 79750 1687 53373 54500 92828 92828 0.0421675759757818 YPSRIGSIINY 11 Unmodified _YPSRIGSIINY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.3455200195312 2 641.843145 1281.67174 0.064279 4.1257E-05 -0.34163 -0.00021927 -0.27735 -0.00017801 641.8429121237156 56.431 0.38477 56.363 56.174 56.559 -0.068737 65 19 5 0 0 0 0.02135 2 30617 30617;30725 57.108 34.45 1 99438000 79751 1687 53373 54500 92829;92830 92829 0.0421675759757818 YPSRIGSIINY 11 Unmodified _YPSRIGSIINY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 641.8434448242188 2 641.843145 1281.67174 0.26148 0.00016783 0.20662 0.00013262 0.4681 0.00030045 641.8432864161925 65.598 1.5892 59.422 58.49 60.079 -6.1757 210 91 3 0 0 0 1.0592000000000001E-20 7 42532 41995;42146;42281;42404;42532;42668;42804 146.68 76.632 1 51279000 79752 1687 53373 54500 92831;92832;92833;92834;92835;92836;92837 92835 0.0421675759757818 YPSRIGSIINY 11 Unmodified _YPSRIGSIINY_ 0 0 0 ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 ENSG00000099219|ENST00000339450|ERMP1 MSMS AL20221201_MKP_PDAC_01 4 641.8439331054688 2 641.843145 1281.67174 NaN NaN NaN NaN NaN NaN NaN 66.078 1 59.903 59.403 60.403 -6.1757 0 0 0 6.217E-07 1 42951 42951 92.201 50.361 1 79753 1687 53373 54500 92838 92838 0.0421675759757818 YPSRVFVGDTF 11 Unmodified _YPSRVFVGDTF_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000461999.1_1_11:118968563-118968800:-|nuORF nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 644.32275390625 2 644.322045 1286.62954 0.091261 5.8801E-05 0.31284 0.00020157 0.40411 0.00026037 644.3219733499564 58.401 0.34847 57.91 57.741 58.09 -0.49079 38 16 3 0 0 0 0.0091632 1 31728 31728 68.76 30.145 1 6185400 79754 8197 53374 54501 92839 92839 -0.0023121781080135406 YPSRVFVGDTF 11 Unmodified _YPSRVFVGDTF_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000461999.1_1_11:118968563-118968800:-|nuORF nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.3214111328125 2 644.322045 1286.62954 0.92428 0.00059553 -0.82282 -0.00053016 0.10147 6.5376E-05 644.3220817197902 58.045 0.21945 57.979 57.852 58.072 -0.066032 20 10 3 0 0 0 0.016495 1 31582 31582 60.899 22.285 1 4559400 79755 8197 53374 54501 92840 92840 -0.0023121781080135406 YPSRVFVGDTF 11 Unmodified _YPSRVFVGDTF_ 0 0 0 nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;ENST00000461999.1_1_11:118968563-118968800:-|nuORF nc|ENSG00000172269|Q9H3H5-2|DPAGT1 nc|ENSG00000172269|Q9H3H5-2|DPAGT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 644.3228149414062 2 644.322045 1286.62954 1.2989 0.00083693 0.70508 0.0004543 2.004 0.0012912 644.322602075175 64.12 0.47795 57.944 57.802 58.28 -6.1757 40 24 2 0 0 0 8.3658E-09 2 41630 41495;41630 111.31 57.905 1 15553000 79756 8197 53374 54501 92841;92842 92842 -0.0023121781080135406 YPSSDNSLY 9 Unmodified _YPSSDNSLY_ 0 0 0 ENST00000284165.10_1_14:65543196-65543538:-|nuORF;nc|ENSG00000125952|P61244-2|MAX;ENSG00000125952|ENST00000358664|MAX ENST00000284165.10_1_14:65543196-65543538:-|nuORF ENST00000284165.10_1_14:65543196-65543538:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.2279052734375 2 523.227279 1044.44001 0.72054 0.00037701 1.2957 0.00067794 2.0162 0.0010549 523.2275518086186 38.414 0.57402 38.414 38.306 38.88 0 56 35 2 0 0 0 0.070838 2 20588 20466;20588 39.957 14.558 1 6553100 79757 3912 53375 54502 92843;92844 92844 -0.08043709823982681 YPSSGNMKNHS 11 Unmodified _YPSSGNMKNHS_ 0 0 0 REV__ENSG00000152784|ENST00000415738|PRDM8 REV__ENSG00000152784|ENST00000415738|PRDM8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.2692260742188 2 611.269487 1220.52442 0.21009 0.00012842 -3.4542 -0.0021114 -3.2441 -0.001983 611.2681921297502 31.476 0.24324 31.476 31.318 31.561 0 24 11 3 0 0 0 0.65846 1 16382 16382 8.1555 0.8663 1 1490700 + 79758 21136 53376 54503 92845 92845 -0.07702082278888156 YPSSGNMKNHS 11 Unmodified _YPSSGNMKNHS_ 0 0 0 REV__ENSG00000152784|ENST00000415738|PRDM8 REV__ENSG00000152784|ENST00000415738|PRDM8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 611.269487 1220.52442 0.21009 0.00012842 -3.4542 -0.0021114 -3.2441 -0.001983 611.2681921297502 31.476 0.24324 31.476 31.318 31.561 0 0.059679 -0.0005718 NaN 8.1555 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 1490700 + 79759 21136 53376 54503 -0.07702082278888156 YPSSGNMKNHS 11 Unmodified _YPSSGNMKNHS_ 0 0 0 REV__ENSG00000152784|ENST00000415738|PRDM8 REV__ENSG00000152784|ENST00000415738|PRDM8 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 611.269487 1220.52442 0.26855 0.00016416 -2.0737 -0.0012676 -1.8051 -0.0011034 611.7699184899981 31.459 0.122 31.356 31.284 31.406 -0.10269 -0.059679 0.0011159 NaN 8.1555 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1078000 + 79760 21136 53376 54503 -0.07702082278888156 YPSTSSLL 8 Unmodified _YPSTSSLL_ 0 0 0 nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM nc|ENSG00000136738|Q92783-2|STAM nc|ENSG00000136738|Q92783-2|STAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 867.447998046875 1 867.445825 866.438549 0.60475 0.00052459 0.6705 0.00058162 1.2753 0.0011062 867.4472953683193 54.785 0.23294 54.785 54.597 54.83 0 13 9 2 0 0 0 0.15234 1 30379 30379 86.121 19.086 1 974620 79761 4851 53377 54504 92846 92846 -1.2991220842195617E-05 YPSVDKREY 9 Unmodified _YPSVDKREY_ 0 0 0 ENSG00000048405|ENST00000265827|ZNF800 ENSG00000048405|ENST00000265827|ZNF800 ENSG00000048405|ENST00000265827|ZNF800 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1924743652344 3 386.192623 1155.55604 -0.34181 -0.000132 1.1422 0.0004411 0.80037 0.0003091 386.1931203185642 23.253 0.43215 23.253 22.955 23.387 0 35 21 2 0 0 0 0.5451 1 11854 11854 4.7159 3.7536 1 770310 79762 700 53378 54505 92847 92847 -0.01551766253282949 YPSVNTCVHY 10 Carbamidomethyl (C) _YPSVNTC(Carbamidomethyl (C))VHY_ YPSVNTC(1)VHY YPSVNTC(83)VHY 0 1 0 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 ENSG00000092148|ENST00000399332|HECTD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.7794189453125 2 620.27678 1238.53901 0.4837 0.00030003 1.1122 0.00068985 1.5959 0.00098988 620.7793976223937 45.909 0.5792 40.955 40.569 41.148 -4.9549 63 38 2 0 0 0 0.012821 1 28315 28315 82.529 52.689 1 15164000 79763 1608 53379 54506 92848 92848 152 -0.07072010130741546 YPSWTFYIQVM 11 Unmodified _YPSWTFYIQVM_ 0 0 0 ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT ENSG00000121691|ENST00000241052|CAT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 717.8399658203125 2 717.841756 1433.66896 NaN NaN NaN NaN NaN NaN NaN 15.386 1 15.386 14.886 15.886 0 0 0 0 0.9435 1 7406 7406 0 0 1 79764 3594 53380 54507 92849 92849 -0.030528338516205622 YPTAVHVL 8 Unmodified _YPTAVHVL_ 0 0 0 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 ENSG00000112234|ENST00000369244|FBXL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 450.2532348632812 2 450.252903 898.491253 -0.15603 -7.0254E-05 -0.06459 -2.9082E-05 -0.22062 -9.9336E-05 450.2528750504856 61.495 0.29926 61.005 60.838 61.137 -0.48932 19 13 2 0 0 0 0.50586 1 33475 33475 34.187 0 1 1083700 79765 2870 53381 54508 92850 92850 0.03794703731375648 YPTEDYKVY 9 Unmodified _YPTEDYKVY_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2750854492188 2 589.274229 1176.53391 0.35342 0.00020826 0.094554 5.5718E-05 0.44798 0.00026398 589.2740387811895 38.505 0.4902 38.505 38.235 38.725 0 117 34 5 0 0 0 0.011211 2 20660 20552;20660 74.2 36.226 1 120300000 79766 7619 53382 54509 92851;92852 92852 -0.04729990721716604 YPTEDYKVY 9 Unmodified _YPTEDYKVY_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2743530273438 2 589.274229 1176.53391 -0.036038 -2.1236E-05 0.31795 0.00018736 0.28191 0.00016612 589.2738534723693 38.968 0.38923 38.682 38.398 38.787 -0.28687 41 17 3 0 0 0 0.012024 1 20517 20517 80.676 44.549 1 9451400 79767 7619 53382 54509 92853 92853 -0.04729990721716604 YPTEDYKVY 9 Unmodified _YPTEDYKVY_ 0 0 0 ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF ENSG00000167515|ENST00000696289|TRAPPC2L ENSG00000167515|ENST00000696289|TRAPPC2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.275146484375 2 589.274229 1176.53391 0.43086 0.00025389 -1.37 -0.00080728 -0.93909 -0.00055338 589.2739976846848 44.154 0.64851 39.302 39.052 39.701 -4.852 129 45 4 0 0 0 0.0081437 3 26809 26809;26947;27076 103.42 65.445 1 214370000 79768 7619 53382 54509 92854;92855;92856 92854 -0.04729990721716604 YPTEGNHRVEF 11 Unmodified _YPTEGNHRVEF_ 0 0 0 nc|ENSG00000196290|Q9GZT8-3|NIF3L1;nc|ENSG00000196290|Q9GZT8-2|NIF3L1;ENSG00000196290|ENST00000409020|NIF3L1 nc|ENSG00000196290|Q9GZT8-3|NIF3L1 nc|ENSG00000196290|Q9GZT8-3|NIF3L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.2130737304688 3 450.214198 1347.62076 0.46188 0.00020794 -0.49698 -0.00022375 -0.0351 -1.5803E-05 450.2140783512666 31.462 0.24324 31.462 31.318 31.561 0 28 11 3 0 0 0 0.33094 1 16355 16355 25.155 14.84 1 4900300 79769 9794 53383 54510 92857 92857 -0.039141914473020734 YPTEGNHRVEF 11 Unmodified _YPTEGNHRVEF_ 0 0 0 nc|ENSG00000196290|Q9GZT8-3|NIF3L1;nc|ENSG00000196290|Q9GZT8-2|NIF3L1;ENSG00000196290|ENST00000409020|NIF3L1 nc|ENSG00000196290|Q9GZT8-3|NIF3L1 nc|ENSG00000196290|Q9GZT8-3|NIF3L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.5487365722656 3 450.214198 1347.62076 1.0159 0.00045736 -0.89546 -0.00040315 0.12041 5.421E-05 450.5484212156966 35.124 0.31689 31.029 30.838 31.155 -4.0951 39 18 3 0 0 0 0.12646 1 20317 20317 39.413 27.185 1 18205000 79770 9794 53383 54510 92858 92858 -0.039141914473020734 YPTEHVQF 8 Unmodified _YPTEHVQF_ 0 0 0 ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.7409057617188 2 510.742899 1019.47125 -0.26292 -0.00013429 -2.3866 -0.0012189 -2.6495 -0.0013532 510.742360022328 41.015 0.2142 41.015 40.94 41.154 0 23 12 3 0 0 0 0.25522 1 22075 22075 61.357 34.474 1 5903800 79771 9548 53384 54511 92859 92859 -0.03771091999237797 YPTEHVQF 8 Unmodified _YPTEHVQF_ 0 0 0 ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM ENSG00000187244|ENST00000270233|BCAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 510.7437133789062 2 510.742899 1019.47125 0.40395 0.00020632 -0.20369 -0.00010403 0.20026 0.00010228 510.7431753668311 46.082 0.18978 41.128 41.018 41.208 -4.9549 21 12 2 0 0 0 0.19688 1 28419 28419 71.134 46.46 1 15867000 79772 9548 53384 54511 92860 92860 -0.03771091999237797 YPTEKGLSF 9 Unmodified _YPTEKGLSF_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.2662963867188 2 521.266207 1040.51786 0.49264 0.0002568 0.090303 4.7072E-05 0.58294 0.00030387 521.2662611254025 46.729 0.31437 46.729 46.565 46.879 0 40 14 4 0 0 0 0.017075 1 25541 25541 66.457 24.617 1 19474000 79773 4137 53385 54512 92861 92861 -0.0007765216794268781 YPTEKGLSF 9 Unmodified _YPTEKGLSF_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MSMS AL20221201_MKP_PDAC_01 4 521.2691650390625 2 521.266207 1040.51786 NaN NaN NaN NaN NaN NaN NaN 52.275 1 46.54 46.04 47.04 -5.7345 0 0 0 0.16551 1 32995 32995 34.932 0.53034 1 79774 4137 53385 54512 92862 92862 -0.0007765216794268781 YPTEKGLSF 9 Unmodified _YPTEKGLSF_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 521.266207 1040.51786 0.57037 0.00029731 -0.76161 -0.000397 -0.19124 -9.9686E-05 521.2658532828793 47.033 0.25162 46.697 46.562 46.814 -0.33664 -0.011628 -0.00050733 NaN 66.457 30 12 3 NaN NaN NaN NaN 0 NaN NaN 0 10697000 79775 4137 53385 54512 -0.0007765216794268781 YPTEKGLSF 9 Unmodified _YPTEKGLSF_ 0 0 0 nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN;ENST00000553336.5_1_14:23938909-23944520:+|nuORF nc|ENSG00000129460|Q8NEJ9-2|NGDN nc|ENSG00000129460|Q8NEJ9-2|NGDN MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 521.266207 1040.51786 1.2927 0.00067382 -0.029854 -1.5562E-05 1.2628 0.00065825 521.2663202428074 46.733 0.11649 46.699 46.637 46.753 -0.033417 -0.0087613 0.00025554 NaN 66.457 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 1112800 79776 4137 53385 54512 -0.0007765216794268781 YPTEKVNCL 9 Carbamidomethyl (C) _YPTEKVNC(Carbamidomethyl (C))L_ YPTEKVNC(1)L YPTEKVNC(130)L 0 1 0 LASP1-RBX1|1|fusion;ENST00000464278.1_1_10:21461310-21462762:-|nuORF;ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000078114|O76041-2|NEBL;nc|ENSG00000002834|Q14847-2|LASP1 LASP1-RBX1|1|fusion LASP1-RBX1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.2774047851562 2 562.276249 1122.53795 -0.36621 -0.00020591 0.17299 9.7271E-05 -0.19321 -0.00010864 562.2763513254264 34.025 0.31752 34.025 33.822 34.14 0 47 15 4 0 0 0 0.0017364 2 17831 17831;17935 134.3 84.363 1 33153000 79777 15976 53386 54513 92863;92864 92863 1001 -0.018422244996600057 YPTEKVNCL 9 Carbamidomethyl (C) _YPTEKVNC(Carbamidomethyl (C))L_ YPTEKVNC(1)L YPTEKVNC(190)L 0 1 0 LASP1-RBX1|1|fusion;ENST00000464278.1_1_10:21461310-21462762:-|nuORF;ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000078114|O76041-2|NEBL;nc|ENSG00000002834|Q14847-2|LASP1 LASP1-RBX1|1|fusion LASP1-RBX1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.2770385742188 2 562.276249 1122.53795 0.53824 0.00030264 -0.40974 -0.00023039 0.12851 7.2257E-05 562.2763807904815 38.66 0.52465 34.291 34.045 34.57 -4.3689 104 33 4 0 0 0 5.5487E-15 2 22760 22760;22892 185.05 109.29 1 119170000 79778 15976 53386 54513 92865;92866 92865 1001 -0.018422244996600057 YPTFDDIF 8 Unmodified _YPTFDDIF_ 0 0 0 REV__ENSG00000142619|ENST00000375460|PADI3 REV__ENSG00000142619|ENST00000375460|PADI3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2662048339844 2 509.231833 1016.44911 0.48749 0.00024825 1.5166 0.00077228 2.004 0.0010205 509.23230467769525 68.369 0.26479 68.369 68.244 68.509 0 19 11 2 0 0 0 8.7369 1 38072 38072 2.3027 0 1 710840 + 79779 20581 53387 54514 92867 92867 -0.05845316467662087 YPTGNHTY 8 Unmodified _YPTGNHTY_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 476.7113037109375 2 476.711599 951.408646 -0.27749 -0.00013228 0.58675 0.00027971 0.30926 0.00014743 476.7116247064462 19.887 0.1981 19.887 19.754 19.952 0 46 20 3 0 0 0 0.46677 1 9930 9930 37.974 9.4872 1 2393300 79780 16069 53388 54515 92868 92868 -0.06900238067419195 YPTGNHTY 8 Unmodified _YPTGNHTY_ 0 0 0 nc|ENSG00000089159|P49023-3|PXN;nc|ENSG00000089159|P49023-2|PXN;nc|ENSG00000089159|P49023|PXN;ENSG00000089159|ENST00000637617|PXN nc|ENSG00000089159|P49023-3|PXN nc|ENSG00000089159|P49023-3|PXN MULTI-MSMS AL20221201_MKP_PDAC_01 4 476.7117614746094 2 476.711599 951.408646 0.89512 0.00042671 0.66972 0.00031926 1.5648 0.00074598 476.71185654816264 22.107 0.26188 19.372 19.19 19.452 -2.7348 21 14 2 0 0 0 0.15594 1 11849 11849 85.272 39.251 1 1844600 79781 16069 53388 54515 92869 92869 -0.06900238067419195 YPTISIDRF 9 Unmodified _YPTISIDRF_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENST00000378249.5_1_10:14987186-14996009:-|nuORF;ENST00000396817.6_1_10:14989607-14996009:-|nuORF;ENST00000357717.6_1_10:14981831-14996009:-|nuORF ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.29248046875 2 556.292756 1110.57096 0.53683 0.00029863 0.50696 0.00028202 1.0438 0.00058065 556.2929878006032 63.291 0.67148 62.804 62.603 63.274 -0.48617 80 30 3 0 0 0 0.029718 1 34654 34654 55.503 26.421 1 47025000 79782 6187 53389 54516 92870 92870 0.02009725614720992 YPTISIDRF 9 Unmodified _YPTISIDRF_ 0 0 0 ENSG00000152457|ENST00000378278|DCLRE1C;nc|ENSG00000152457|Q96SD1-4|DCLRE1C;ENST00000378249.5_1_10:14987186-14996009:-|nuORF;ENST00000396817.6_1_10:14989607-14996009:-|nuORF;ENST00000357717.6_1_10:14981831-14996009:-|nuORF ENSG00000152457|ENST00000378278|DCLRE1C ENSG00000152457|ENST00000378278|DCLRE1C MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.29345703125 2 556.292756 1110.57096 0.95824 0.00053306 -0.3665 -0.00020388 0.59173 0.00032918 556.292544844262 70.101 0.82835 63.926 63.525 64.353 -6.1757 67 46 2 0 0 0 0.01958 2 45868 45729;45868 63.961 30.516 1 46286000 79783 6187 53389 54516 92871;92872 92872 0.02009725614720992 YPTISLHAL 9 Unmodified _YPTISLHAL_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.7846069335938 2 507.784567 1013.55458 0.032236 1.6369E-05 -0.70994 -0.0003605 -0.6777 -0.00034413 507.78385411313 65.08 0.6841 64.596 64.254 64.938 -0.48428 78 31 4 0 0 0 0.0077963 2 35498 35395;35498 109.63 71.478 1 9420400 79784 1121 53390 54517 92873;92874 92874 0.04834644448601466 YPTISLHAL 9 Unmodified _YPTISLHAL_ 0 0 0 ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A ENSG00000074201|ENST00000525428|CLNS1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 507.7851867675781 2 507.784567 1013.55458 1.0431 0.00052965 -0.50614 -0.00025701 0.53693 0.00027264 507.78444355255965 71.506 0.75174 65.33 64.943 65.694 -6.1757 61 38 2 0 0 0 0.0086179 2 46627 46627;46757 89.427 51.639 1 28744000 79785 1121 53390 54517 92875;92876 92875 0.04834644448601466 YPTNSDFEL 9 Unmodified _YPTNSDFEL_ 0 0 0 ENST00000374308.1_1_9:114355204-114361641:-|nuORF;ENST00000374313.5_1_9:114355204-114361983:-|nuORF;nc|ENSG00000106853|Q14914-2|PTGR1;ENSG00000106853|ENST00000407693|PTGR1 ENST00000374308.1_1_9:114355204-114361641:-|nuORF ENST00000374308.1_1_9:114355204-114361641:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.243408203125 2 543.242929 1084.47131 NaN NaN NaN NaN NaN NaN NaN 60.118 1 60.118 59.618 60.618 0 0 0 0 0.39043 1 33522 33522 20.454 6.5476 1 79786 2465 53391 54518 92877 92877 -0.06755136789888638 YPTPYPDEL 9 Unmodified _YPTPYPDEL_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.76025390625 2 547.755672 1093.49679 0.37297 0.00020429 -1.3198 -0.00072294 -0.94685 -0.00051864 547.7547953463588 58.427 0.45045 58.427 58.179 58.63 0 51 17 4 0 0 0 0.038285 2 32461 32461;32550 50.855 6.448 1 16021000 79787 2925 53392 54519 92878;92879 92878 -0.04621662267481952 YPTPYPDEL 9 Unmodified _YPTPYPDEL_ 0 0 0 nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN nc|ENSG00000112851|Q96RT1-7|ERBIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.7554321289062 2 547.755672 1093.49679 0.62775 0.00034385 -0.90706 -0.00049685 -0.27932 -0.000153 547.7556853376858 66.34 0.37991 60.164 59.918 60.298 -6.1757 35 21 2 0 0 0 0.095405 1 43160 43160 34.102 5.6156 1 23505000 79788 2925 53392 54519 92880 92880 -0.04621662267481952 YPTQPGQGY 9 Unmodified _YPTQPGQGY_ 0 0 0 ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS ENST00000487045.6_1_16:31191511-31194161:+|nuORF ENST00000487045.6_1_16:31191511-31194161:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7321166992188 2 505.732532 1009.45051 -0.4358 -0.0002204 -0.26764 -0.00013535 -0.70343 -0.00035575 505.73231594783687 30.434 0.40621 30.434 30.222 30.628 0 75 19 5 0 0 0 0.0082485 1 15847 15847 96.285 63.979 1 170620000 79789 1527 53393 54520 92881 92881 -0.05383682378896992 YPTQPGQGY 9 Unmodified _YPTQPGQGY_ 0 0 0 ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS ENST00000487045.6_1_16:31191511-31194161:+|nuORF ENST00000487045.6_1_16:31191511-31194161:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7337646484375 2 505.732532 1009.45051 0.14859 7.5146E-05 1.4075 0.00071183 1.5561 0.00078697 505.7332083595247 30.484 0.2414 30.401 30.277 30.518 -0.083332 20 8 3 0 0 0 0.070838 1 15817 15817 39.957 9.7325 1 2178500 79790 1527 53393 54520 92882 92882 -0.05383682378896992 YPTQPGQGY 9 Unmodified _YPTQPGQGY_ 0 0 0 ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS ENST00000487045.6_1_16:31191511-31194161:+|nuORF ENST00000487045.6_1_16:31191511-31194161:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 505.7333068847656 2 505.732532 1009.45051 0.047672 2.4109E-05 0.32361 0.00016366 0.37128 0.00018777 505.7325403502108 30.301 0.27535 30.331 30.159 30.434 0.030106 26 11 3 0 0 0 0.042911 1 15804 15804 48.346 25.197 1 2747900 79791 1527 53393 54520 92883 92883 -0.05383682378896992 YPTQPGQGY 9 Unmodified _YPTQPGQGY_ 0 0 0 ENST00000487045.6_1_16:31191511-31194161:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;nc|ENSG00000089280|P35637-2|FUS;ENSG00000089280|ENST00000254108|FUS ENST00000487045.6_1_16:31191511-31194161:+|nuORF ENST00000487045.6_1_16:31191511-31194161:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.7325439453125 2 505.732532 1009.45051 0.57087 0.00028871 -0.46531 -0.00023532 0.10556 5.3384E-05 505.7322677106307 35.432 0.49721 31.239 30.977 31.474 -4.1928 81 30 4 0 0 0 0.0082661 2 20535 20535;20666 92.491 56.447 1 227460000 79792 1527 53393 54520 92884;92885 92884 -0.05383682378896992 YPTSIASLAF 10 Unmodified _YPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.2825317382812 2 535.281857 1068.54916 0.44726 0.00023941 0.49943 0.00026734 0.94669 0.00050674 535.2820058757491 84.595 0.63269 84.096 83.645 84.278 -0.49961 47 28 2 0 0 0 0.31022 1 46236 46236 26.884 6.43 1 4606600 79793 6327 53394 54521 92886 92886 0.01762920866121931 YPTSIASLAF 10 Unmodified _YPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 535.7830810546875 2 535.281857 1068.54916 -0.11942 -6.3923E-05 0.29956 0.00016035 0.18014 9.6425E-05 535.2819525542916 83.909 0.2151 83.972 83.857 84.072 0.063179 11 8 2 0 0 0 0.043729 1 46414 46414 61.357 29.052 1 9609500 79794 6327 53394 54521 92887 92887 0.01762920866121931 YPTSIASLAF 10 Unmodified _YPTSIASLAF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.2823486328125 2 535.281857 1068.54916 0.80509 0.00043095 -0.23235 -0.00012437 0.57274 0.00030658 535.281530831487 92.385 0.86919 86.21 85.757 86.626 -6.1757 125 52 3 0 0 0 0.051739 3 61015 60891;61015;61142 57.471 23.369 1 54979000 79795 6327 53394 54521 92888;92889;92890 92889 0.01762920866121931 YPTSTLAG 8 Unmodified _YPTSTLAG_ 0 0 0 ENSG00000075891|ENST00000355243|PAX2;nc|ENSG00000075891|Q02962|PAX2;nc|ENSG00000075891|Q02962-4|PAX2;nc|ENSG00000075891|Q02962-2|PAX2 ENSG00000075891|ENST00000355243|PAX2 ENSG00000075891|ENST00000355243|PAX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.2060241699219 2 405.205618 808.396684 -0.53601 -0.0002172 1.0704 0.00043373 0.53438 0.00021653 405.2058848973101 18.505 0.3326 18.528 18.287 18.619 0.023106 97 65 2 0 0 0 0.80143 1 9264 9264 5.7604 0 1 505990 79796 1173 53395 54522 92891 92891 -0.015178548106064227 YPTSVPVLY 9 Unmodified _YPTSVPVLY_ 0 0 0 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 ENSG00000134107|ENST00000256495|BHLHE40 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7791137695312 2 519.778951 1037.54335 0.03266 1.6976E-05 0.3094 0.00016082 0.34206 0.00017779 519.7790847513675 70.237 0.29825 69.758 69.615 69.914 -0.47903 32 14 3 0 0 0 0.013472 1 38444 38444 70.716 47.567 1 2828800 79797 4557 53396 54523 92892 92892 0.026078223544800494 YPTTTISY 8 Unmodified _YPTTTISY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 945.4509887695312 1 945.45639 944.449113 -0.24644 -0.000233 -2.5456 -0.0024068 -2.792 -0.0026398 945.4528294768924 45.64 0.40534 45.64 45.512 45.918 0 30 20 2 0 0 0 0.11943 2 24952 24843;24952 93.883 46.963 1 6854200 79798 8081 53397 54524 92893;92894 92894 -0.02533316467656732 YPTTTISY 8 Unmodified _YPTTTISY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 473.2306823730469 2 473.231833 944.449113 0.27624 0.00013072 -2.1675 -0.0010257 -1.8913 -0.00089502 473.2300597582193 45.608 0.442 45.608 45.497 45.939 0 39 22 3 0 0 0 0.2655 1 24858 24858 59.795 27.678 1 10402000 79799 8081 53397 54524 92895 92895 -0.02533316467656732 YPTTTISY 8 Unmodified _YPTTTISY_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MSMS AL20221201_MKP_PDAC_01 4 473.2320861816406 2 473.231833 944.449113 NaN NaN NaN NaN NaN NaN NaN 53.018 1 47.214 46.714 47.714 -5.8042 0 0 0 0.34053 1 33475 33475 59.795 27.678 1 79800 8081 53397 54524 92896 92896 -0.02533316467656732 YPTTTISYL 9 Unmodified _YPTTTISYL_ 0 0 0 ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB ENSG00000171223|ENST00000302754|JUNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7750244140625 2 529.773865 1057.53318 0.20356 0.00010784 -0.50215 -0.00026603 -0.29859 -0.00015819 529.7733764303833 65.245 0.26018 64.76 64.616 64.876 -0.48428 19 11 2 0 0 0 0.18465 1 35563 35563 24.674 0 1 2760900 79801 8081 53398 54525 92897 92897 0.006712146292329635 YPTVDSNSL 9 Unmodified _YPTVDSNSL_ 0 0 0 ENSG00000167978|ENST00000301740|SRRM2;nc|ENSG00000167978|Q9UQ35-2|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 ENSG00000167978|ENST00000301740|SRRM2 MSMS AL20221201_MKP_PDAC_01 4 498.2389831542969 2 498.237647 994.460741 NaN NaN NaN NaN NaN NaN NaN 51.135 1 45.486 44.986 45.986 -5.649 0 0 0 0.025979 1 32153 32153 71.134 36.732 1 79802 7692 53399 54526 92898 92898 -0.03671119444334181 YPTVGDVAL 9 Unmodified _YPTVGDVAL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 467.7480773925781 2 467.74765 933.480748 0.44883 0.00020994 0.14463 6.7651E-05 0.59346 0.00027759 467.74782008607156 64.137 0.48654 64.137 63.879 64.365 0 48 20 3 0 0 0 0.019979 2 35794 35689;35794 63.563 9.9873 1 8073200 79803 1972 53400 54527 92899;92900 92900 0.011346762862785909 YPTVGDVAL 9 Unmodified _YPTVGDVAL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 934.4888305664062 1 934.488024 933.480748 0.27843 0.00026019 0.43627 0.00040769 0.7147 0.00066788 934.4884691806524 64.199 0.39438 64.199 63.93 64.324 0 37 16 3 0 0 0 0.0082281 2 35804 35699;35804 92.822 25.478 1 3318500 79804 1972 53400 54527 92901;92902 92902 0.011346762862785909 YPTVGDVAL 9 Unmodified _YPTVGDVAL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 467.7478637695312 2 467.74765 933.480748 0.47907 0.00022409 0.30978 0.0001449 0.78886 0.00036899 467.7477681012725 64.683 0.29959 64.198 64.037 64.337 -0.48512 21 13 2 0 0 0 0.48152 1 35334 35334 8.5933 0.68312 1 920930 79805 1972 53400 54527 92903 92903 0.011346762862785909 YPTVGDVAL 9 Unmodified _YPTVGDVAL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU;ENST00000480175.1_1_20:33167126-33176390:-|nuORF ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 467.748046875 2 467.74765 933.480748 1.1053 0.00051699 -0.43126 -0.00020172 0.67401 0.00031526 467.7474563586289 71.385 0.35976 65.209 64.985 65.345 -6.1757 24 17 2 0 0 0 0.0086179 1 46655 46655 89.427 18.711 1 18511000 79806 1972 53400 54527 92904 92904 0.011346762862785909 YPTVKICNY 9 Carbamidomethyl (C) _YPTVKIC(Carbamidomethyl (C))NY_ YPTVKIC(1)NY YPTVKIC(110)NY 0 1 0 nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2;ENST00000467116.5_1_10:104155716-104158713:+|nuORF;nc|ENSG00000077150|Q00653-3|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 nc|ENSG00000077150|Q00653-4|NFKB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.2868041992188 2 579.286617 1156.55868 1.1273 0.00065301 -0.77256 -0.00044754 0.35471 0.00020548 579.2861371247235 50.433 0.6339 44.894 44.502 45.136 -5.5391 94 40 3 0 0 0 0.0059585 2 31602 31602;31748 114.65 68.628 1 47503000 79807 1206 53401 54528 92905;92906 92905 109 -0.013336341199874369 YPVCVSKVV 9 Carbamidomethyl (C) _YPVC(Carbamidomethyl (C))VSKVV_ YPVC(1)VSKVV YPVC(120)VSKVV 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7860717773438 2 525.786253 1049.55795 -0.035608 -1.8722E-05 -0.83329 -0.00043813 -0.8689 -0.00045686 525.7858051986768 45.679 0.15677 45.355 45.253 45.41 -0.32425 11 8 2 0 0 0 0.0047067 1 24406 24406 118.07 74.21 1 21928000 79808 16067;16068 53402 54529 92907 92907 1004 0.03515571230968817 YPVCVSKVV 9 Carbamidomethyl (C) _YPVC(Carbamidomethyl (C))VSKVV_ YPVC(1)VSKVV YPVC(86)VSKVV 0 1 0 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-4|OAS1;ENSG00000089127|ENST00000202917|OAS1;ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1;nc|ENSG00000089127|P00973-3|OAS1 nc|ENSG00000089127|P00973-2|OAS1 MSMS AL20221201_MKP_PDAC_01 4 525.7870483398438 2 525.786253 1049.55795 NaN NaN NaN NaN NaN NaN NaN 51.302 1 45.653 45.153 46.153 -5.649 0 0 0 0.014214 1 32274 32274 86.332 63.596 1 79809 16067;16068 53402 54529 92908 92908 1004 0.03515571230968817 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 988.4991455078125 1 988.498589 987.491313 0.35156 0.00034752 0.85273 0.00084292 1.2043 0.0011904 988.499430595691 73.909 0.68013 73.909 73.591 74.271 0 76 30 3 0 0 0 0.013323 4 41207 41005;41105;41207;41306 71.134 38.828 1 4429100 79810 7707 53403 54530 92909;92910;92911;92912 92911 -0.0029334105927318888 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 494.7537841796875 2 494.752933 987.491313 0.5054 0.00025005 0.44951 0.0002224 0.95491 0.00047245 494.75292300717535 73.929 0.5463 73.929 73.591 74.137 0 36 23 2 0 0 0 0.2143 2 41169 41072;41169 21.747 9.2151 1 1041100 79811 7707 53403 54530 92913;92914 92914 -0.0029334105927318888 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 988.498779296875 1 988.498589 987.491313 0.61287 0.00060582 0.29726 0.00029384 0.91013 0.00089966 988.4989438234848 74.417 0.517 73.941 73.69 74.207 -0.47588 36 21 2 0 0 0 0.095405 2 40655 40655;40755 34.102 17.663 1 1156800 79812 7707 53403 54530 92915;92916 92915 -0.0029334105927318888 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 988.4981689453125 1 988.498589 987.491313 0.75318 0.00074452 0.073997 7.3146E-05 0.82718 0.00081767 988.4974830287076 81.864 0.64803 75.688 75.395 76.044 -6.1757 71 36 3 0 0 0 0.00856 3 53703 53703;53823;53983 100.37 60.414 1 27495000 79813 7707 53403 54530 92917;92918;92919 92917 -0.0029334105927318888 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MSMS AL20221201_MKP_PDAC_01 4 494.753662109375 2 494.752933 987.491313 NaN NaN NaN NaN NaN NaN NaN 81.829 1 75.653 75.153 76.153 -6.1757 0 0 0 0.029091 1 53730 53730 67.344 25.249 1 79814 7707 53403 54530 92920 92920 -0.0029334105927318888 YPVDGLPDL 9 Unmodified _YPVDGLPDL_ 0 0 0 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 ENSG00000168036|ENST00000349496|CTNNB1 MSMS AL20221201_MKP_PDAC_01 4 494.7534790039062 2 494.752933 987.491313 NaN NaN NaN NaN NaN NaN NaN 82.02 1 75.845 75.345 76.345 -6.1757 0 0 0 0.080768 1 53862 53862 48.346 8.3885 1 79815 7707 53403 54530 92921 92921 -0.0029334105927318888 YPVDLGDKF 9 Unmodified _YPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2665405273438 2 527.266207 1052.51786 0.73794 0.00038909 -0.1965 -0.00010361 0.54144 0.00028548 527.2661059116939 53.696 0.57006 53.696 53.462 54.032 0 75 26 5 0 0 0 0.0089732 2 29698 29698;29805 86.332 48.358 1 61225000 79816 16329 53404 54531 92922;92923 92922 -0.006296521679814759 YPVDLGDKF 9 Unmodified _YPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.2662353515625 2 527.266207 1052.51786 0.087068 4.5908E-05 0.83262 0.00043901 0.91969 0.00048492 527.2663104476726 54.268 0.42162 53.801 53.586 54.007 -0.46664 42 21 3 0 0 0 0.021948 2 29343 29343;29456 61.602 36.203 1 19623000 79817 16329 53404 54531 92924;92925 92924 -0.006296521679814759 YPVDLGDKF 9 Unmodified _YPVDLGDKF_ 0 0 0 nc|ENSG00000163882|P52434-4|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H nc|ENSG00000163882|P52434-4|POLR2H nc|ENSG00000163882|P52434-4|POLR2H MULTI-MSMS AL20221201_MKP_PDAC_01 4 527.2671508789062 2 527.266207 1052.51786 1.1012 0.00058063 0.77439 0.00040831 1.8756 0.00098894 527.266312625973 60.54 0.54321 54.392 54.182 54.726 -6.1478 80 28 4 0 0 0 0.0047067 3 38891 38891;39013;39141 118.07 72.047 1 203040000 79818 16329 53404 54531 92926;92927;92928 92926 -0.006296521679814759 YPVEAARL 8 Unmodified _YPVEAARL_ 0 0 0 nc|ENSG00000177427|Q96C03-3|MIEF2;ENSG00000177427|ENST00000323019|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 nc|ENSG00000177427|Q96C03-3|MIEF2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 459.2709045410156 2 459.75581 917.497067 0.73838 0.00033947 -0.72562 -0.00033361 0.012761 5.8671E-06 459.7558419924507 39.15 0.25063 39.15 39.012 39.263 0 19 11 2 0 0 0 8.7369 1 20923 20923 3.9444 1.3669 1 2279700 79819 8683 53405 54532 92929 92929 0.03501802243022212 YPVEDFEASF 10 Unmodified _YPVEDFEASF_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2611083984375 2 602.263862 1202.51317 -0.045167 -2.7203E-05 -3.287 -0.0019796 -3.3321 -0.0020068 602.2609645498825 72.397 0.22854 72.397 72.258 72.487 0 15 8 3 0 0 0 0.52888 1 40318 40318 14.838 4.7643 1 734860 79820 1160 53406 54533 92930 92930 -0.07998581101401214 YPVEFRNL 8 Unmodified _YPVEFRNL_ 0 0 0 ENSG00000109084|ENST00000226230|TMEM97 ENSG00000109084|ENST00000226230|TMEM97 ENSG00000109084|ENST00000226230|TMEM97 MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.2726440429688 2 519.274367 1036.53418 1.1264 0.0005849 -1.6147 -0.00083845 -0.48829 -0.00025356 519.2725743440848 50.678 0.38473 45.029 44.847 45.232 -5.649 30 23 2 0 0 0 0.48669 1 31923 31923 36.044 9.1605 1 81699000 79821 2628 53407 54534 92931 92931 0.017374737888076197 YPVEHPDKF 9 Unmodified _YPVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8541259765625 3 377.85383 1130.53966 -0.43442 -0.00016415 0.36066 0.00013628 -0.073752 -2.7868E-05 377.8539354564082 29.073 0.4047 29.073 28.903 29.308 0 67 19 5 0 0 0 0.044296 2 14993 14993;15092 44.392 33.493 1 138460000 79822 7318 53408 54535 92932;92933 92932 -0.020388474193850925 YPVEHPDKF 9 Unmodified _YPVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2776489257812 2 566.277106 1130.53966 -0.18331 -0.00010381 0.47874 0.0002711 0.29542 0.00016729 566.2773080775875 29.09 0.25914 29.09 28.943 29.202 0 40 12 4 0 0 0 0.011291 1 15015 15015 76.825 49.941 1 10786000 79823 7318 53408 54535 92934 92934 -0.020388474193850925 YPVEHPDKF 9 Unmodified _YPVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8547973632812 3 377.85383 1130.53966 0.60736 0.00022949 -0.034078 -1.2877E-05 0.57328 0.00021662 377.8536055069051 29.023 0.22862 28.961 28.81 29.039 -0.06216 19 9 3 0 0 0 0.062454 1 14981 14981 46.022 29.456 1 10098000 79824 7318 53408 54535 92935 92935 -0.020388474193850925 YPVEHPDKF 9 Unmodified _YPVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.8544006347656 3 377.85383 1130.53966 1.2363 0.00046712 0.24053 9.0887E-05 1.4768 0.00055801 377.8538335090507 32.659 0.46102 28.803 28.549 29.01 -3.8562 88 24 5 0 0 0 0.029718 2 18669 18552;18669 51.488 31.862 1 233960000 79825 7318 53408 54535 92936;92937 92937 -0.020388474193850925 YPVEHPDKF 9 Unmodified _YPVEHPDKF_ 0 0 0 ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF ENSG00000165280|ENST00000358901|VCP ENSG00000165280|ENST00000358901|VCP MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.27783203125 2 566.277106 1130.53966 0.90171 0.00051062 0.63553 0.00035989 1.5372 0.0008705 566.277421456079 32.662 0.40877 28.806 28.565 28.974 -3.8562 47 21 3 0 0 0 0.0082548 2 18570 18570;18686 96.367 64.061 1 37119000 79826 7318 53408 54535 92938;92939 92938 -0.020388474193850925 YPVEIHEY 8 Unmodified _YPVEIHEY_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2494506835938 2 525.250557 1048.48656 0.0018188 9.5534E-07 0.10559 5.5459E-05 0.1074 5.6414E-05 525.250297371922 41.674 0.40202 41.674 41.499 41.901 0 73 20 5 0 0 0 0.084609 2 22444 22444;22559 104.8 44.41 1 268890000 79827 9929 53409 54536 92940;92941 92940 -0.03574225202055459 YPVEIHEY 8 Unmodified _YPVEIHEY_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2506103515625 2 525.250557 1048.48656 -0.29422 -0.00015454 -0.3109 -0.0001633 -0.60512 -0.00031784 525.2504161683493 42.007 0.22348 41.7 41.574 41.798 -0.30682 16 10 2 0 0 0 0.12393 1 22306 22306 92.822 48.415 1 6262600 79828 9929 53409 54536 92942 92942 -0.03574225202055459 YPVEIHEY 8 Unmodified _YPVEIHEY_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.25048828125 2 525.250557 1048.48656 0.97214 0.00051061 -1.3868 -0.00072843 -0.41468 -0.00021781 525.2495612167256 47.217 0.74207 42.136 41.894 42.636 -5.0805 137 50 4 0 0 0 0.15558 3 29395 29127;29259;29395 85.357 49.313 1 291230000 79829 9929 53409 54536 92943;92944;92945 92945 -0.03574225202055459 YPVEIHEYL 9 Unmodified _YPVEIHEYL_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7930908203125 2 581.792589 1161.57063 0.23331 0.00013574 0.9057 0.00052693 1.139 0.00066267 581.7930407403841 58.505 0.40837 58.505 58.34 58.748 0 52 16 4 0 0 0 0.0047067 2 32554 32554;32655 133.7 82.847 1 33368000 79830 9929 53410 54537 92946;92947 92946 -0.003696941051430258 YPVEIHEYL 9 Unmodified _YPVEIHEYL_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7929077148438 2 581.792589 1161.57063 0.26725 0.00015548 0.73293 0.00042641 1.0002 0.0005819 581.7929877899425 59.108 0.44337 58.617 58.412 58.855 -0.4908 60 20 4 0 0 0 0.010301 2 32187 32087;32187 88.904 40.558 1 54521000 79831 9929 53410 54537 92948;92949 92949 -0.003696941051430258 YPVEIHEYL 9 Unmodified _YPVEIHEYL_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 581.7935180664062 2 581.792589 1161.57063 1.0327 0.00060079 2.8136 0.001637 3.8463 0.0022377 581.7956911939807 58.666 0.51387 58.605 58.47 58.984 -0.060722 41 25 3 0 0 0 0.010301 1 31962 31962 88.904 40.558 1 3101400 79832 9929 53410 54537 92950 92950 -0.003696941051430258 YPVEIHEYL 9 Unmodified _YPVEIHEYL_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7933349609375 2 581.792589 1161.57063 0.76373 0.00044433 0.86436 0.00050288 1.6281 0.00094721 581.7929788506877 65.007 0.74175 58.832 58.509 59.251 -6.1757 138 41 4 0 0 0 0.0086209 4 42129 42005;42129;42267;42396 133.7 59.279 1 139660000 79833 9929 53410 54537 92951;92952;92953;92954 92952 -0.003696941051430258 YPVEIHEYL 9 Unmodified _YPVEIHEYL_ 0 0 0 ENSG00000197223|ENST00000410067|C1D;ENST00000485709.1_1_2:68273401-68290109:-|nuORF ENSG00000197223|ENST00000410067|C1D ENSG00000197223|ENST00000410067|C1D MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7940673828125 2 581.792589 1161.57063 0.47625 0.00027708 0.18333 0.00010666 0.65958 0.00038374 581.7925811825584 66.628 0.57772 60.452 60.137 60.714 -6.1757 65 32 3 0 0 0 0.0086209 2 43337 43202;43337 112.59 55.122 1 30171000 79834 9929 53410 54537 92955;92956 92956 -0.003696941051430258 YPVEKFVATM 10 Unmodified _YPVEKFVATM_ 0 0 0 ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP ENSG00000170275|ENST00000320954|CRTAP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 593.2306518554688 2 592.804642 1183.59473 0.75876 0.00044979 1.0035 0.00059489 1.7623 0.0010447 592.8049070304604 63.533 0.4072 57.357 57.156 57.564 -6.1757 34 22 2 0 0 0 0.19886 1 41009 41009 24.991 10.153 1 11761000 79835 7966 53411 54538 92957 92957 0.0102782305684741 YPVEVELKL 9 Unmodified _YPVEVELKL_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.313232421875 2 545.313158 1088.61176 -0.015293 -8.3393E-06 1.8735 0.0010217 1.8582 0.0010133 545.3137444567025 68.983 0.3209 68.502 68.376 68.697 -0.48071 22 13 2 0 0 0 0.10134 1 37692 37692 41.956 22.517 1 1926100 79836 478 53412 54539 92958 92958 0.07100066934322058 YPVEVELKL 9 Unmodified _YPVEVELKL_ 0 0 0 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 ENSG00000013563|ENST00000369807|DNASE1L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3134765625 2 545.313158 1088.61176 0.68023 0.00037094 -0.6743 -0.0003677 0.0059317 3.2346E-06 545.3127728776165 75.955 0.62937 69.779 69.499 70.128 -6.1757 62 33 2 0 0 0 0.02676 3 49869 49611;49735;49869 70.332 25.475 1 14639000 79837 478 53412 54539 92959;92960;92961 92961 0.07100066934322058 YPVFPWIIHDY 11 Unmodified _YPVFPWIIHDY_ 0 0 0 ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF;ENST00000519858.1_1_8:59513803-59535956:-|nuORF ENSG00000035681|ENST00000038176|NSMAF ENSG00000035681|ENST00000038176|NSMAF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 725.3638305664062 2 725.363713 1448.71287 2.3401 0.0016974 -0.98647 -0.00071555 1.3536 0.00098188 725.3630768908057 95.728 0.29006 95.732 95.575 95.865 0.004158 24 10 3 0 0 0 0.019459 1 53193 53193 57.722 48.178 1 4314100 79838 616 53413 54540 92962 92962 0.006465186370405718 YPVGHPVDVSF 11 Unmodified _YPVGHPVDVSF_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.8032836914062 2 608.803488 1215.59242 0.51044 0.00031076 0.81715 0.00049748 1.3276 0.00080824 608.8037874734815 54.039 0.29447 54.039 53.858 54.152 0 29 13 3 0 0 0 0.0008837 1 29966 29966 85.272 50.87 1 4623700 79839 5718 53414 54541 92963 92963 -0.0067488935658275295 YPVGHPVDVSF 11 Unmodified _YPVGHPVDVSF_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.8024291992188 2 608.803488 1215.59242 0.042916 2.6128E-05 -0.18381 -0.0001119 -0.14089 -8.5774E-05 608.8031770019114 54.581 0.34731 54.115 53.934 54.281 -0.46664 56 17 4 0 0 0 0.00053139 2 29524 29524;29628 111.29 65.587 1 26098000 79840 5718 53414 54541 92964;92965 92964 -0.0067488935658275295 YPVGHPVDVSF 11 Unmodified _YPVGHPVDVSF_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.8037109375 2 608.803488 1215.59242 0.92526 0.0005633 -0.058131 -3.539E-05 0.86713 0.00052791 608.8033047881084 60.68 0.48754 54.532 54.274 54.762 -6.1478 69 25 3 0 0 0 1.4401E-11 3 38936 38936;39049;39180 149.99 102.25 1 110770000 79841 5718 53414 54541 92966;92967;92968 92966 -0.0067488935658275295 YPVGHPVDVSF 11 Unmodified _YPVGHPVDVSF_ 0 0 0 nc|ENSG00000145730|P19021-2|PAM;nc|ENSG00000145730|P19021-4|PAM;nc|ENSG00000145730|P19021-3|PAM;nc|ENSG00000145730|P19021-6|PAM;ENSG00000145730|ENST00000438793|PAM;nc|ENSG00000145730|P19021-5|PAM nc|ENSG00000145730|P19021-2|PAM nc|ENSG00000145730|P19021-2|PAM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 608.803488 1215.59242 0.14081 8.5726E-05 -0.06969 -4.2428E-05 0.07112 4.3298E-05 608.8041222520724 54.269 0.17957 54.203 54.101 54.28 -0.066936 0.084015 -0.00025348 NaN 111.29 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 965910 79842 5718 53414 54541 -0.0067488935658275295 YPVGMKRCL 9 Unmodified _YPVGMKRCL_ 0 0 0 REV__ENST00000437848.1_1_1:46116879-46117065:-|nuORF REV__ENST00000437848.1_1_1:46116879-46117065:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7811279296875 2 533.780447 1065.54634 NaN NaN NaN NaN NaN NaN NaN 35.777 1 35.555 35.055 36.055 -0.2224 0 0 0 0.82015 1 18747 18747 5.2307 0 1 + 79843 20937 53415 54542 92969 92969 0.01619050935960331 YPVHAQMPSL 10 Oxidation (M) _YPVHAQM(Oxidation (M))PSL_ YPVHAQM(1)PSL YPVHAQM(59)PSL 0 0 1 nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.78564453125 2 579.784241 1157.55393 -0.48303 -0.00028005 0.16247 9.4195E-05 -0.32056 -0.00018586 579.7843219043805 36.36 0.24522 36.111 35.927 36.172 -0.2497 30 10 4 0 0 0 0.04925 1 19051 19051 58.679 40.532 1 4298100 79844 3305 53416 54543 92970 92970 588 -0.01854518262757665 YPVHAQMPSL 10 Unmodified _YPVHAQMPSL_ 0 0 0 nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7894287109375 2 571.786784 1141.55902 0.65279 0.00037325 3.577 0.0020453 4.2298 0.0024185 571.7892845678766 52.104 0.29842 51.67 51.531 51.83 -0.43367 26 14 2 0 0 0 0.48505 1 28153 28153 17.113 0.96379 1 1839600 79845 3305 53416 54544 92971 92971 -0.006102144001260967 YPVHAQMPSL 10 Unmodified _YPVHAQMPSL_ 0 0 0 nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 nc|ENSG00000117461|Q92569-3|PIK3R3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7893676757812 2 571.786784 1141.55902 0.59583 0.00034069 2.0593 0.0011775 2.6551 0.0015182 571.7883988252117 57.824 0.25703 51.796 51.666 51.923 -6.0275 20 14 2 0 0 0 0.14917 1 37013 37013 39.957 21.811 1 35333000 79846 3305 53416 54544 92972 92972 -0.006102144001260967 YPVKEKVFY 9 Unmodified _YPVKEKVFY_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.5504455566406 3 391.549859 1171.62775 -0.29257 -0.00011455 1.1605 0.00045438 0.86791 0.00033983 391.5502470794982 36.203 0.3219 36.228 36.053 36.375 0.024967 21 10 3 0 0 0 0.43463 1 19174 19174 10.8 6.61 1 2818000 79847 5557 53417 54545 92973 92973 0.04879773171251145 YPVKEKVFY 9 Unmodified _YPVKEKVFY_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.3226318359375 2 586.82115 1171.62775 0.024468 1.4359E-05 0.29076 0.00017062 0.31523 0.00018498 587.3226674868279 36.216 0.13039 36.241 36.168 36.298 0.024967 9 5 2 0 0 0 0.25681 1 19205 19205 19.257 4.4187 1 1500900 79848 5557 53417 54545 92974 92974 0.04879773171251145 YPVKEKVFY 9 Unmodified _YPVKEKVFY_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 587.3245849609375 2 586.82115 1171.62775 0.8757 0.00051388 -0.50145 -0.00029426 0.37425 0.00021962 586.8211736373831 40.745 0.42153 36.216 35.918 36.339 -4.5294 55 25 3 0 0 0 0.0089732 3 24289 24197;24289;24428 86.332 53.546 1 16472000 79849 5557 53417 54545 92975;92976;92977 92976 0.04879773171251145 YPVKEKVFY 9 Unmodified _YPVKEKVFY_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 391.5502014160156 3 391.549859 1171.62775 1.2171 0.00047656 -2.0579 -0.00080577 -0.84078 -0.00032921 391.5498908371181 40.701 0.56623 36.172 35.824 36.39 -4.5294 70 34 3 0 0 0 0.15471 2 24424 24297;24424 20.581 14.389 1 44790000 79850 5557 53417 54545 92978;92979 92979 0.04879773171251145 YPVKEKVFY 9 Unmodified _YPVKEKVFY_ 0 0 0 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 ENSG00000143819|ENST00000272167|EPHX1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 586.82115 1171.62775 -0.50187 -0.00029451 0.65657 0.00038529 0.15469 9.0778E-05 586.8214573300755 36.569 0.25457 36.319 36.172 36.427 -0.2497 0.044673 0.00075283 NaN 86.332 24 11 3 NaN NaN NaN NaN 0 NaN NaN 0 5665500 79851 5557 53417 54545 0.04879773171251145 YPVKGASGY 9 Unmodified _YPVKGASGY_ 0 0 0 ENSG00000172687|ENST00000683779|ZNF738;nc|ENSG00000172687|Q8NE65-2|ZNF738 ENSG00000172687|ENST00000683779|ZNF738 ENSG00000172687|ENST00000683779|ZNF738 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2398681640625 2 471.239993 940.465432 -0.06914 -3.2582E-05 1.3945 0.00065712 1.3253 0.00062454 471.2403363974932 23.834 0.17999 23.834 23.735 23.915 0 15 8 2 0 0 0 0.25681 1 12155 12155 19.257 4.6753 1 784270 79852 8242 53418 54546 92980 92980 -0.007181905109064246 YPVKIKVRF 9 Unmodified _YPVKIKVRF_ 0 0 0 nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9106140136719 3 383.90961 1148.707 0.89157 0.00034228 -0.1435 -5.509E-05 0.74807 0.00028719 384.2436687864401 46.406 0.14415 41.325 41.201 41.345 -5.0805 10 9 2 0 0 0 0.19361 1 28660 28660 23.79 20.203 1 11846000 79853 1132 53419 54547 92981 92981 0.13859464916049546 YPVKIKVRF 9 Unmodified _YPVKIKVRF_ 0 0 0 nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 nc|ENSG00000074696|Q9P035-2|HACD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 383.9100646972656 3 383.90961 1148.707 1.2003 0.00046082 -0.1199 -4.6029E-05 1.0804 0.00041479 383.9096444816886 78.956 0.74945 72.78 72.452 73.202 -6.1757 56 42 2 0 0 0 0.37578 1 51763 51763 13.615 7.8314 1 10234000 79854 1132 53419 54547 92982 92982 0.13859464916049546 YPVKLYVY 8 Unmodified _YPVKLYVY_ 0 0 0 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7940673828125 2 522.791861 1043.56917 0.22531 0.00011779 1.35 0.00070576 1.5753 0.00082355 522.7919957470518 58.021 0.22914 57.531 57.41 57.639 -0.48974 17 10 2 0 0 0 0.40035 1 31546 31546 44.407 23.536 1 1482700 79855 1822 53420 54548 92983 92983 0.049127165967547626 YPVKLYVY 8 Unmodified _YPVKLYVY_ 0 0 0 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 522.7926635742188 2 522.791861 1043.56917 0.7203 0.00037657 1.754 0.00091699 2.4743 0.0012936 522.7926965272248 57.68 0.218 57.614 57.476 57.694 -0.066036 25 10 3 0 0 0 0.46494 1 31393 31393 38.151 18.712 1 2396700 79856 1822 53420 54548 92984 92984 0.049127165967547626 YPVKLYVY 8 Unmodified _YPVKLYVY_ 0 0 0 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 ENSG00000100418|ENST00000263256|DESI1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.792724609375 2 522.791861 1043.56917 0.96347 0.0005037 0.20172 0.00010546 1.1652 0.00060915 522.7920254407138 63.374 0.35181 57.199 57.075 57.427 -6.1757 33 20 2 0 0 0 0.40035 1 40986 40986 44.407 29.825 1 14038000 79857 1822 53420 54548 92985 92985 0.049127165967547626 YPVKSSVQF 9 Unmodified _YPVKSSVQF_ 0 0 0 REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.78076171875 2 527.782025 1053.5495 0.52646 0.00027785 -1.262 -0.00066607 -0.73555 -0.00038821 527.7810716801162 82.482 0.31224 81.987 81.767 82.079 -0.4952 15 12 2 0 0 0 0.36964 1 45157 45157 13.906 2.2658 1 666710 + 79858 27895 53421 54549 92986 92986 0.024863405860060084 YPVKSSVQF 9 Unmodified _YPVKSSVQF_ 0 0 0 REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF REV__ENST00000491771.5_1_2:152135291-152146334:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 527.782025 1053.5495 0.52646 0.00027785 -1.262 -0.00066607 -0.73555 -0.00038821 527.7810716801162 82.482 0.31224 81.987 81.767 82.079 -0.4952 0 0 NaN 13.906 15 12 2 NaN NaN NaN NaN 0 NaN NaN 0 666710 + 79859 27895 53421 54549 0.024863405860060084 YPVKYTQTF 9 Unmodified _YPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.784423828125 2 573.795132 1145.57571 0.25469 0.00014614 -0.31316 -0.00017969 -0.058467 -3.3548E-05 573.7948236619744 42.637 0.29014 42.331 42.197 42.488 -0.30682 38 12 4 0 0 0 0.0013034 3 22605 22605;22624;22724 137.42 79.952 1 67936000 79860 2889 53422 54550 92987;92988;92989 92987 0.008746097574658052 YPVKYTQTF 9 Unmodified _YPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7949829101562 2 573.795132 1145.57571 0.26656 0.00015295 1.9767 0.0011342 2.2433 0.0012872 573.7950635486693 42.346 0.3431 42.337 42.101 42.444 -0.0088196 29 15 3 0 0 0 0.044011 1 22668 22668 47.749 22.349 1 13291000 79861 2889 53422 54550 92990 92990 0.008746097574658052 YPVKYTQTF 9 Unmodified _YPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.7958374023438 2 573.795132 1145.57571 1.0574 0.00060673 0.44362 0.00025455 1.501 0.00086127 573.7952148068852 47.932 0.50347 42.698 42.42 42.923 -5.2339 103 30 4 0 0 0 0.0044708 3 29810 29670;29810;29941 118.89 75.036 1 265500000 79862 2889 53422 54550 92991;92992;92993 92992 0.008746097574658052 YPVKYTQTF 9 Unmodified _YPVKYTQTF_ 0 0 0 ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP ENSG00000112378|ENST00000421351|PERP MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 573.795132 1145.57571 0.59817 0.00034323 -1.7974 -0.0010314 -1.1993 -0.00068813 573.7929645175801 42.373 0.25928 42.373 42.161 42.42 0 -0.061724 -0.0021655 NaN 137.42 23 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4125000 79863 2889 53422 54550 0.008746097574658052 YPVNAISF 8 Unmodified _YPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 455.7371520996094 2 455.737086 909.459619 0.50292 0.0002292 0.41502 0.00018914 0.91794 0.00041834 455.73723936710593 67.841 0.30995 67.359 67.165 67.475 -0.48218 21 13 2 0 0 0 0.67481 1 37026 37026 19.439 5.9311 1 1226100 79864 6327 53423 54551 92994 92994 0.0012671097741758786 YPVNAISF 8 Unmodified _YPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 910.46923828125 1 910.466895 909.459619 0.21193 0.00019296 1.0084 0.00091809 1.2203 0.001111 910.467655264262 67.847 0.28688 67.364 67.189 67.475 -0.48219 20 12 2 0 0 0 0.50586 2 37029 37029;37131 34.187 18.419 1 1263500 79865 6327 53423 54551 92995;92996 92995 0.0012671097741758786 YPVNAISF 8 Unmodified _YPVNAISF_ 0 0 0 ENSG00000154473|ENST00000368865|BUB3;nc|ENSG00000154473|O43684-2|BUB3;ENST00000481952.1_1_10:124921781-124922345:+|nuORF ENSG00000154473|ENST00000368865|BUB3 ENSG00000154473|ENST00000368865|BUB3 MSMS AL20221201_MKP_PDAC_01 4 455.7379760742188 2 455.737086 909.459619 NaN NaN NaN NaN NaN NaN NaN 74.13 1 67.955 67.455 68.455 -6.1757 0 0 0 0.44807 1 48465 48465 46.921 12.734 1 79866 6327 53423 54551 92997 92997 0.0012671097741758786 YPVNHLVTF 9 Unmodified _YPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.2903442382812 2 545.290017 1088.56548 0.10277 5.6039E-05 0.089532 4.8821E-05 0.1923 0.00010486 545.2899182205019 59.228 0.55594 58.738 58.412 58.968 -0.49079 105 25 5 0 0 0 0.015445 2 32140 32140;32246 68.081 44.932 1 189010000 79867 4289 53424 54552 92998;92999 92998 0.024740468228856116 YPVNHLVTF 9 Unmodified _YPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2901000976562 2 545.290017 1088.56548 0.4926 0.00026861 -0.10569 -5.7632E-05 0.38691 0.00021098 545.2898820755976 58.876 0.53868 58.816 58.546 59.085 -0.060719 99 26 5 0 0 0 0.0090948 3 32078 31981;32078;32183 85.272 62.124 1 147420000 79868 4289 53424 54552 93000;93001;93002 93001 0.024740468228856116 YPVNHLVTF 9 Unmodified _YPVNHLVTF_ 0 0 0 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 ENSG00000131037|ENST00000201647|EPS8L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.2906494140625 2 545.290017 1088.56548 1.0574 0.00057659 -0.29438 -0.00016052 0.76301 0.00041606 545.2898289783243 64.701 0.94628 58.525 58.09 59.036 -6.1757 196 52 5 0 0 0 0.0082485 4 41997 41728;41867;41997;42131 96.285 63.979 1 739480000 79869 4289 53424 54552 93003;93004;93005;93006 93005 0.024740468228856116 YPVNSVIF 8 Unmodified _YPVNSVIF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 938.4973754882812 1 938.498195 937.490919 0.62134 0.00058313 -1.0375 -0.00097372 -0.41619 -0.00039059 938.4980740618288 73.355 0.32497 72.879 72.717 73.042 -0.47588 21 14 2 0 0 0 0.37649 1 40112 40112 46.921 0 1 813020 79870 4799 53425 54553 93007 93007 0.019672840115163126 YPVNSVIF 8 Unmodified _YPVNSVIF_ 0 0 0 nc|ENSG00000136205|Q68CZ2-2|TNS3;ENSG00000136205|ENST00000311160|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 nc|ENSG00000136205|Q68CZ2-2|TNS3 MSMS AL20221201_MKP_PDAC_01 4 469.7526550292969 2 469.752736 937.490919 NaN NaN NaN NaN NaN NaN NaN 80.395 1 74.22 73.72 74.72 -6.1757 0 0 0 0.44807 1 52747 52747 46.921 0 1 79871 4799 53425 54553 93008 93008 0.019672840115163126 YPVPDVSTY 9 Unmodified _YPVPDVSTY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7501831054688 2 520.75039 1039.48623 1.1079 0.00057695 0.27848 0.00014502 1.3864 0.00072197 520.7499473896121 54.564 0.46003 54.564 54.352 54.812 0 64 19 5 0 0 0 0.078417 2 30248 30248;30345 38.151 16.717 1 13565000 79872 9097 53426 54554 93009;93010 93009 -0.03193644921907435 YPVPDVSTY 9 Unmodified _YPVPDVSTY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1040.557495117188 1 1040.4935 1039.48623 0.28649 0.00029809 0.28131 0.0002927 0.5678 0.00059079 1040.4936731407402 54.583 0.3902 54.583 54.375 54.765 0 37 16 3 0 0 0 0.0018186 1 30255 30255 133.7 91.607 1 4218400 79873 9097 53426 54554 93011 93011 -0.03193644921907435 YPVPDVSTY 9 Unmodified _YPVPDVSTY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7513427734375 2 520.75039 1039.48623 0.27864 0.0001451 0.28621 0.00014905 0.56486 0.00029415 520.7503258136499 55.315 0.37677 54.837 54.629 55.006 -0.47798 33 17 2 0 0 0 0.078417 1 30004 30004 38.151 23.569 1 3705700 79874 9097 53426 54554 93012 93012 -0.03193644921907435 YPVPDVSTY 9 Unmodified _YPVPDVSTY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7503051757812 2 520.75039 1039.48623 1.1416 0.00059449 -1.1478 -0.00059773 -0.0062351 -3.2469E-06 520.7491823576328 63.015 0.47014 56.839 56.586 57.056 -6.1757 62 24 3 0 0 0 0.052168 2 40650 40650;40785 44.407 18.066 1 81053000 79875 9097 53426 54554 93013;93014 93013 -0.03193644921907435 YPVPDVSTY 9 Unmodified _YPVPDVSTY_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 1040.4935 1039.48623 0.25307 0.00026331 -0.83476 -0.00086856 -0.58169 -0.00060525 1040.4935169500905 55.283 0.25361 54.805 54.691 54.945 -0.47798 0.11072 -0.00090618 NaN 133.7 16 11 2 NaN NaN NaN NaN 0 NaN NaN 0 1089000 79876 9097 53426 54554 -0.03193644921907435 YPVPQHEL 8 Unmodified _YPVPQHEL_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7531433105469 2 491.753267 981.491981 0.559 0.00027489 0.055637 2.736E-05 0.61464 0.00030225 491.75316503872733 36.77 0.32862 36.77 36.588 36.916 0 24 15 2 0 0 0 0.25522 1 19528 19528 61.357 25.313 1 2854200 79877 6117 53427 54555 93015 93015 0.0004949838042875854 YPVPQHEL 8 Unmodified _YPVPQHEL_ 0 0 0 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 ENSG00000151470|ENST00000425929|C4orf33 MSMS AL20221201_MKP_PDAC_01 4 491.7542724609375 2 491.753267 981.491981 NaN NaN NaN NaN NaN NaN NaN 41.815 1 37.207 36.707 37.707 -4.6079 0 0 0 0.47897 1 25169 25169 42.095 9.9776 1 79878 6117 53427 54555 93016 93016 0.0004949838042875854 YPVPYDQEEL 10 Unmodified _YPVPYDQEEL_ 0 0 0 ENSG00000167165|ENST00000305139|UGT1A6;nc|ENSG00000167165|P19224-3|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 ENSG00000167165|ENST00000305139|UGT1A6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 626.7904052734375 2 626.790244 1251.56593 0.55347 0.00034691 0.19114 0.0001198 0.74461 0.00046672 626.7902935606312 57.145 0.3996 57.145 56.947 57.346 0 35 17 3 0 0 0 0.1942 2 31750 31750;31863 34.402 23.602 1 2707000 79879 7581 53428 54556 93017;93018 93017 -0.0497862303857346 YPVRAKITY 9 Unmodified _YPVRAKITY_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1;ENST00000587561.1_1_18:57020403-57026476:-|nuORF ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8191528320312 2 555.818941 1109.62333 -0.030671 -1.7047E-05 0.17946 9.9746E-05 0.14879 8.2698E-05 555.8191278563836 31.651 0.12789 31.681 31.584 31.712 0.030106 9 5 2 0 0 0 0.06294 1 16589 16589 41.84 12.758 1 1892700 79880 1131 53429 54557 93019 93019 0.0729030874831551 YPVRAKITY 9 Unmodified _YPVRAKITY_ 0 0 0 ENSG00000074695|ENST00000251047|LMAN1;ENST00000587561.1_1_18:57020403-57026476:-|nuORF ENSG00000074695|ENST00000251047|LMAN1 ENSG00000074695|ENST00000251047|LMAN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 555.8223266601562 2 555.818941 1109.62333 1.292 0.00071814 1.1074 0.00061554 2.3995 0.0013337 555.8200739150464 35.802 0.25211 31.609 31.457 31.709 -4.1928 26 15 2 0 0 0 0.020973 1 20814 20814 62.573 22.615 1 8588300 79881 1131 53429 54557 93020 93020 0.0729030874831551 YPVSARHWF 9 Unmodified _YPVSARHWF_ 0 0 0 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 ENSG00000071553|ENST00000369762|ATP6AP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 388.1987609863281 3 388.197931 1161.57196 0.20445 7.9368E-05 0.49107 0.00019063 0.69552 0.00027 388.1982152015258 45.852 0.31861 45.824 45.702 46.02 -0.028011 24 14 2 0 0 0 0.069655 1 24638 24638 40.239 28.744 1 4961800 79882 1058 53430 54558 93021 93021 -0.0023601522573244438 YPVSLNINL 9 Unmodified _YPVSLNINL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.791259765625 2 516.78985 1031.56515 0.5321 0.00027499 0.20188 0.00010433 0.73398 0.00037931 516.7897230669872 82.496 0.56718 82.001 81.72 82.287 -0.4952 68 23 4 0 0 0 0.019303 2 45061 45061;45163 64.236 33.6 1 7544000 79883 2778 53431 54559 93022;93023 93022 0.050626271030296266 YPVSLNINL 9 Unmodified _YPVSLNINL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7898559570312 2 516.78985 1031.56515 1.9205 0.00099251 -1.0676 -0.00055172 0.85294 0.00044079 516.7890939550471 81.862 0.5372 81.922 81.61 82.148 0.059929 59 21 4 0 0 0 0.0090851 2 45169 45169;45273 85.357 39.336 1 22523000 79884 2778 53431 54559 93024;93025 93024 0.050626271030296266 YPVSLNINL 9 Unmodified _YPVSLNINL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7903442382812 2 516.78985 1031.56515 1.0448 0.00053992 0.3634 0.0001878 1.4082 0.00072772 516.7899267065742 89.89 0.79477 83.715 83.376 84.171 -6.1757 153 44 4 0 0 0 0.008678 4 59286 59161;59286;59406;59535 88.904 37.011 1 230750000 79885 2778 53431 54559 93026;93027;93028;93029 93027 0.050626271030296266 YPVSLNINL 9 Unmodified _YPVSLNINL_ 0 0 0 nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A nc|ENSG00000111319|P37088-4|SCNN1A MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 516.78985 1031.56515 0.28562 0.00014761 -0.52397 -0.00027078 -0.23834 -0.00012317 516.7894005312423 81.959 0.15898 81.959 81.925 82.084 0 -0.0018848 -7.58E-05 NaN 85.357 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 317760 79886 2778 53431 54559 0.050626271030296266 YPVSSPKSM 9 Oxidation (M) _YPVSSPKSM(Oxidation (M))_ YPVSSPKSM(1) YPVSSPKSM(60) 0 0 1 ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 ENSG00000133657|ENST00000645319|ATP13A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.2447814941406 2 506.244418 1010.47428 1.1586 0.00058655 -1.0083 -0.00051047 0.15029 7.6086E-05 506.2438230723725 21.518 0.26426 18.784 18.711 18.976 -2.7348 27 18 2 0 0 0 0.023481 1 11528 11528 60.074 18.234 1 2006700 79887 4527 53432 54560 93030 93030 824 -0.03053584936731113 YPVTPELLERY 11 Unmodified _YPVTPELLERY_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 690.3648071289062 2 690.36391 1378.71327 NaN NaN NaN NaN NaN NaN NaN 66.058 1 66.058 65.558 66.558 0 0 0 0 0.82644 1 36843 36843 10.8 2.644 1 79888 10025 53433 54561 93031 93031 0.039058935662524163 YPVTPELLERY 11 Unmodified _YPVTPELLERY_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 690.8651733398438 2 690.36391 1378.71327 0.12893 8.9007E-05 0.18996 0.00013114 0.31888 0.00022015 690.3641454689727 66.522 0.26913 66.039 65.902 66.171 -0.48323 29 12 3 0 0 0 0.17129 1 36314 36314 34.222 21.981 1 1808900 79889 10025 53433 54561 93032 93032 0.039058935662524163 YPVTSRPY 8 Unmodified _YPVTSRPY_ 0 0 0 nc|ENSG00000187908|Q9UGM3-9|DMBT1;nc|ENSG00000187908|Q9UGM3-4|DMBT1;nc|ENSG00000187908|Q9UGM3-8|DMBT1;nc|ENSG00000187908|Q9UGM3-2|DMBT1;nc|ENSG00000187908|Q9UGM3-5|DMBT1;nc|ENSG00000187908|Q9UGM3-3|DMBT1;nc|ENSG00000187908|Q9UGM3|DMBT1;nc|ENSG00000187908|Q9UGM3-7|DMBT1;ENSG00000187908|ENST00000338354|DMBT1 nc|ENSG00000187908|Q9UGM3-9|DMBT1 nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 492.2702331542969 2 491.753267 981.491981 0.43001 0.00021146 -1.3647 -0.00067109 -0.93467 -0.00045963 491.75284318344904 46.444 0.32192 41.364 41.13 41.452 -5.0805 40 25 2 0 0 0 8.7369 1 28547 28547 15.768 1.1865 1 74118000 79890 9607 53434 54562 93033 93033 0.0004949838041738985 YPVTVLSICI 10 Unmodified _YPVTVLSICI_ 0 0 0 REV__ENSG00000254834|ENST00000526538|OR5M10 REV__ENSG00000254834|ENST00000526538|OR5M10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.3092651367188 2 554.309561 1106.60457 0.61057 0.00033844 -0.78058 -0.00043268 -0.17001 -9.4239E-05 554.3089395661162 93.557 0.24166 93.1 92.957 93.198 -0.4574 16 10 2 0 0 0 0.67033 1 51108 51108 6.2058 2.2614 1 226990 + 79891 24529 53435 54563 93034 93034 0.05553011062261248 YPVTYILP 8 Unmodified _YPVTYILP_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.7447814941406 2 483.270761 964.52697 0.71152 0.00034386 -4.3059 -0.0020809 -3.5944 -0.0017371 483.26896012872686 30.347 0.15426 30.266 30.205 30.359 -0.080429 7 5 2 0 0 0 8.7369 1 15758 15758 4.756 0.42677 1 1214400 79892 5488 53436 54564 93035 93035 0.04328741188373897 YPVTYILP 8 Unmodified _YPVTYILP_ 0 0 0 ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM ENSG00000143315|ENST00000368090|PIGM MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 483.270761 964.52697 0.065413 3.1612E-05 -1.4481 -0.00069983 -1.3827 -0.00066821 483.2699484161343 30.118 0.18603 30.148 30.021 30.207 0.030106 -0.059072 0.00036397 NaN 4.756 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 669630 79893 5488 53436 54564 0.04328741188373897 YPVYWDHLEF 10 Unmodified _YPVYWDHLEF_ 0 0 0 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 ENSG00000090487|ENST00000204566|SPG21 MSMS AL20221201_MKP_PDAC_01 4 684.8178100585938 2 684.816596 1367.61864 NaN NaN NaN NaN NaN NaN NaN 95.951 1 89.775 89.275 90.275 -6.1757 0 0 0 0.015821 1 63565 63565 71.922 53.776 1 79894 1559 53437 54565 93036 93036 -0.050466201851122605 YPWDLQDRY 9 Unmodified _YPWDLQDRY_ 0 0 0 nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.2908325195312 2 628.290745 1254.56694 0.10631 6.6795E-05 0.91462 0.00057464 1.0209 0.00064144 628.2913727643395 59.165 0.44737 58.675 58.474 58.921 -0.49079 43 20 3 0 0 0 0.18144 2 32178 32178;32285 24.991 11.948 1 2425300 79895 268 53438 54566 93037;93038 93037 -0.05016363879008168 YPWDLQDRY 9 Unmodified _YPWDLQDRY_ 0 0 0 nc|ENSG00000003147|Q05084-3|ICA1;ENSG00000003147|ENST00000402384|ICA1;nc|ENSG00000003147|Q05084-2|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 nc|ENSG00000003147|Q05084-3|ICA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.2897338867188 2 628.290745 1254.56694 0.30091 0.00018906 -1.664 -0.0010455 -1.3631 -0.00085641 628.2894856005908 65.326 0.62941 59.15 58.752 59.382 -6.1757 54 34 2 0 0 0 0.0082475 2 42407 42258;42407 92.653 33.975 1 14691000 79896 268 53438 54566 93039;93040 93040 -0.05016363879008168 YPWHMLYL 8 Unmodified _YPWHMLYL_ 0 0 0 REV__ENSG00000117448|ENST00000351829|AKR1A1 REV__ENSG00000117448|ENST00000351829|AKR1A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.7758178710938 2 561.775688 1121.53682 -0.32547 -0.00018284 -0.088108 -4.9497E-05 -0.41358 -0.00023234 561.7753554686423 26.939 0.20912 26.939 26.824 27.033 0 21 9 3 0 0 0 0.61999 1 13862 13862 24.21 0.42018 1 1752200 + 79897 19105 53439 54567 93041 93041 -0.01908394077918274 YPWILTSP 8 Unmodified _YPWILTSP_ 0 0 0 ENSG00000187533|ENST00000344526|PRR27 ENSG00000187533|ENST00000344526|PRR27 ENSG00000187533|ENST00000344526|PRR27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 488.760986328125 2 488.760561 975.506569 0.11997 5.8634E-05 1.0034 0.00049042 1.1234 0.00054905 488.7611421044157 30.779 0.34395 30.809 30.604 30.948 0.030106 26 14 2 0 0 0 0.80232 1 16129 16129 5.2307 0 1 1217100 79898 9561 53440 54568 93042 93042 0.01783570528561995 YPWLRGLGY 9 Unmodified _YPWLRGLGY_ 0 0 0 nc|ENSG00000078124|Q9NUN7-2|ACER3;ENSG00000078124|ENST00000532485|ACER3;ENST00000530334.5_1_11:76579304-76726162:+|nuORF nc|ENSG00000078124|Q9NUN7-2|ACER3 nc|ENSG00000078124|Q9NUN7-2|ACER3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.80078125 2 562.798009 1123.58147 1.5003 0.00084435 1.8114 0.0010194 3.3116 0.0018638 562.7994378518881 71.272 0.33839 71.311 71.109 71.447 0.039024 35 14 3 0 0 0 0.06187 1 39185 39185 42.095 27.513 1 2419000 79899 1237 53441 54569 93043 93043 0.024617530598106896 YPWRRHSVRL 10 Unmodified _YPWRRHSVRL_ 0 0 0 REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 457.2595825195312 3 457.258184 1368.75272 1.05 0.00048012 3.8059 0.0017403 4.8559 0.0022204 457.2591899774675 34.961 0.32368 30.866 30.668 30.991 -4.0951 24 18 2 0 0 0 0.51153 1 20228 20228 15.739 7.2943 1 13415000 + 79900 26104 53442 54570 93044 93044 0.08309503150962883 YPWRRRQRWRR 11 Unmodified _YPWRRRQRWRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 858.4808959960938 2 858.48254 1714.95053 NaN NaN NaN NaN NaN NaN NaN 29.941 1 29.861 29.361 30.361 -0.080429 0 0 0 0.9435 1 15524 15524 0 0 1 79901 12387 53443 54571 93045 93045 0.12164942133449586 YPWRRRQRWRR 11 Unmodified _YPWRRRQRWRR_ 0 0 0 ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF ENST00000372724.5_1_10:76586363-76598485:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 858.481201171875 2 858.48254 1714.95053 NaN NaN NaN NaN NaN NaN NaN 58.492 1 52.417 51.917 52.917 -6.0745 0 0 0 0.94184 1 37480 37480 1.1933 1.1933 1 79902 12387 53443 54571 93046 93046 0.12164942133449586 YPWSQRVSF 9 Unmodified _YPWSQRVSF_ 0 0 0 nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 nc|ENSG00000106683|P53667-4|LIMK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.291259765625 2 585.290548 1168.56654 0.59999 0.00035117 -0.18996 -0.00011118 0.41004 0.00023999 585.2902737362311 59.84 0.50094 59.787 59.535 60.036 -0.053062 54 24 3 0 0 0 0.078314 2 32545 32545;32650 38.176 17.304 1 7998100 79903 2452 53444 54572 93047;93048 93047 -0.010997388081932513 YPWTIDNKY 9 Unmodified _YPWTIDNKY_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.2892456054688 2 600.290214 1198.56587 0.12068 7.2441E-05 -0.5842 -0.00035069 -0.46353 -0.00027825 600.2896910057977 54.772 0.51464 54.306 54.084 54.599 -0.46664 80 25 4 0 0 0 0.0085526 3 29698 29597;29698;29806 129.77 87.678 1 20533000 79904 2154 53445 54573 93049;93050;93051 93050 -0.025465782479159316 YPWTIDNKY 9 Unmodified _YPWTIDNKY_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.29052734375 2 600.290214 1198.56587 0.003423 2.0548E-06 0.030722 1.8442E-05 0.034145 2.0497E-05 600.2900050854779 54.48 0.47834 54.413 54.122 54.6 -0.066936 29 23 2 0 0 0 0.0061279 1 29591 29591 126.57 63.993 1 3875600 79905 2154 53445 54573 93052 93052 -0.025465782479159316 YPWTIDNKY 9 Unmodified _YPWTIDNKY_ 0 0 0 ENST00000558725.5_1_15:67519241-67546969:-|nuORF;ENSG00000103591|ENST00000261880|AAGAB ENST00000558725.5_1_15:67519241-67546969:-|nuORF ENST00000558725.5_1_15:67519241-67546969:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2903442382812 2 600.290214 1198.56587 0.35969 0.00021592 -0.34744 -0.00020857 0.012247 7.3516E-06 600.2899316569237 60.431 0.79366 54.283 53.95 54.744 -6.1478 116 41 4 0 0 0 0.00016425 3 38875 38750;38875;39015 179.17 136.35 1 136960000 79906 2154 53445 54573 93053;93054;93055 93054 -0.025465782479159316 YPWVNILKISF 11 Unmodified _YPWVNILKISF_ 0 0 0 nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;ENSG00000070159|ENST00000374541|PTPN3 nc|ENSG00000070159|P26045-3|PTPN3 nc|ENSG00000070159|P26045-3|PTPN3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 690.3905029296875 2 690.389731 1378.76491 1.4577 0.0010064 0.29176 0.00020143 1.7495 0.0012078 690.3899360766044 100.84 0.081879 94.666 94.635 94.717 -6.1757 11 4 3 0 0 0 5.2027E-06 1 67563 67563 94.909 69.918 1 25106000 79907 1019 53446 54574 93056 93056 0.09067682050795156 YPWVVDRVVF 10 Unmodified _YPWVVDRVVF_ 0 0 0 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.3446655273438 2 640.345323 1278.67609 0.23383 0.00014973 -0.70684 -0.00045262 -0.473 -0.00030289 640.3451561051868 83.496 0.24101 83.56 83.412 83.653 0.063171 10 8 2 0 0 0 0.084474 1 46218 46218 49.527 29.113 1 7627700 79908 2626 53447 54575 93057 93057 0.047902668111191815 YPWVVDRVVF 10 Unmodified _YPWVVDRVVF_ 0 0 0 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 ENSG00000109066|ENST00000335464|TMEM104 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 640.3477172851562 2 640.345323 1278.67609 1.0085 0.0006458 1.4813 0.00094856 2.4898 0.0015944 640.8478154972254 97.978 0.10006 91.803 91.731 91.831 -6.1757 8 5 2 0 0 0 0.22728 1 64954 64954 17.443 9.5325 1 30941000 79909 2626 53447 54575 93058 93058 0.047902668111191815 YPWWEQQGF 9 Unmodified _YPWWEQQGF_ 0 0 0 ENSG00000204394|ENST00000375663|VARS1;nc|ENSG00000204394|P26640-2|VARS1 ENSG00000204394|ENST00000375663|VARS1 ENSG00000204394|ENST00000375663|VARS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 620.7740478515625 2 620.774731 1239.53491 0.9471 0.00058794 1.1436 0.00070989 2.0907 0.0012978 620.7750456413025 89.177 0.53084 83.001 82.617 83.147 -6.1757 58 29 3 0 0 0 0.016184 2 58753 58753;58889 67.344 36.707 1 12224000 79910 10278 53448 54576 93059;93060 93059 -0.07527731562186091 YPYAAISY 8 Unmodified _YPYAAISY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.4511108398438 1 947.450911 946.443634 -0.42459 -0.00040228 0.70852 0.00067129 0.28393 0.00026901 947.4511712047616 55 0.2289 55 54.92 55.149 0 18 9 3 0 0 0 0.41521 1 30543 30543 42.968 22.514 1 1596300 79911 6106 53449 54577 93061 93061 -0.03172995259478739 YPYAAISY 8 Unmodified _YPYAAISY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2317504882812 2 474.229094 946.443634 0.19526 9.2598E-05 0.6367 0.00030194 0.83196 0.00039454 474.23014693636514 55.041 0.25173 55.041 54.897 55.149 0 15 10 2 0 0 0 0.64035 1 30581 30581 22.453 6.6844 1 683410 79912 6106 53449 54577 93062 93062 -0.03172995259478739 YPYAAISY 8 Unmodified _YPYAAISY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 947.4497680664062 1 947.450911 946.443634 0.10726 0.00010163 -0.62972 -0.00059663 -0.52246 -0.000495 947.4505367775507 55.728 0.24744 55.25 55.112 55.36 -0.47798 17 11 2 0 0 0 0.48233 1 30213 30213 36.466 16.013 1 1067000 79913 6106 53449 54577 93063 93063 -0.03172995259478739 YPYAAISY 8 Unmodified _YPYAAISY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 947.453125 1 947.450911 946.443634 1.3695 0.0012975 0.056784 5.38E-05 1.4263 0.0013513 947.451031270754 62.863 0.37502 56.688 56.482 56.857 -6.1757 29 18 2 0 0 0 0.32412 3 40510 40470;40510;40632 52.693 20.619 1 14698000 79914 6106 53449 54577 93064;93065;93066 93065 -0.03172995259478739 YPYAAISY 8 Unmodified _YPYAAISY_ 0 0 0 ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF;ENST00000531161.5_1_11:44146432-44228372:+|nuORF;ENST00000525559.1_1_11:44148473-44193310:+|nuORF ENSG00000151348|ENST00000533608|EXT2 ENSG00000151348|ENST00000533608|EXT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 474.2294616699219 2 474.229094 946.443634 1.8894 0.00089601 0.056721 2.6899E-05 1.9461 0.00092291 474.22897985916785 62.822 0.37502 56.646 56.482 56.857 -6.1757 30 18 3 0 0 0 0.21538 1 40556 40556 67.413 25.318 1 12774000 79915 6106 53449 54577 93067 93067 -0.03172995259478739 YPYCDYEM 8 Carbamidomethyl (C),Oxidation (M) _YPYC(Carbamidomethyl (C))DYEM(Oxidation (M))_ YPYC(1)DYEM YPYCDYEM(1) YPYC(50)DYEM YPYCDYEM(50) 0 1 1 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7015991210938 2 578.701725 1155.3889 1.2012 0.00069511 0.81989 0.00047447 2.0211 0.0011696 578.7019961935079 40.824 0.3195 36.295 36.13 36.449 -4.5294 33 19 2 0 0 0 0.35156 1 24490 24490 49.669 38.869 1 6200500 79916 4412 53450 54578 93068 93068 456 806 -0.18258118184712657 YPYDDPFSL 9 Unmodified _YPYDDPFSL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 558.748291015625 2 558.747847 1115.48114 0.40286 0.0002251 0.47195 0.0002637 0.87481 0.0004888 558.7479818600885 80.553 0.44911 80.553 80.296 80.745 0 54 22 3 0 0 0 0.06187 3 44716 44618;44716;44813 42.095 16.695 1 2198900 79917 8569 53451 54579 93069;93070;93071 93070 -0.07197948784528307 YPYDDPFSL 9 Unmodified _YPYDDPFSL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.7478637695312 2 558.747847 1115.48114 1.0072 0.00056276 -1.3157 -0.00073513 -0.30849 -0.00017237 558.7471768280249 81.084 0.27355 80.592 80.38 80.654 -0.49247 16 13 2 0 0 0 0.12841 1 44361 44361 30.225 13.283 1 2181800 79918 8569 53451 54579 93072 93072 -0.07197948784528307 YPYDDPFSL 9 Unmodified _YPYDDPFSL_ 0 0 0 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 ENSG00000176153|ENST00000389614|GPX2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 558.855712890625 2 558.747847 1115.48114 1.1899 0.00066484 1.7583 0.00098247 2.9482 0.0016473 558.7487846402491 88.639 0.41505 82.463 82.221 82.636 -6.1757 46 22 3 0 0 0 0.094631 1 58356 58356 25.399 15.325 1 16498000 79919 8569 53451 54579 93073 93073 -0.07197948784528307 YPYEAPPSY 9 Unmodified _YPYEAPPSY_ 0 0 0 ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7423095703125 2 543.742565 1085.47058 -0.26725 -0.00014531 1.0786 0.0005865 0.81138 0.00044118 543.7429134997459 44.855 0.69648 44.855 44.61 45.306 0 96 36 3 0 0 0 0.0077963 4 24426 24327;24426;24537;24679 109.63 69.672 1 58424000 79920 9904 53452 54580 93074;93075;93076;93077 93075 -0.06873931438940417 YPYEAPPSY 9 Unmodified _YPYEAPPSY_ 0 0 0 ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 ENSG00000197070|ENST00000371421|ARRDC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.7432250976562 2 543.742565 1085.47058 0.39635 0.00021551 0.23301 0.0001267 0.62936 0.00034221 543.7426204440052 52.049 0.69804 46.315 46.066 46.764 -5.7345 80 44 2 0 0 0 0.0036753 4 32859 32712;32859;32997;33116 123.1 74.75 1 77093000 79921 9904 53452 54580 93078;93079;93080;93081 93079 -0.06873931438940417 YPYEHSYGL 9 Unmodified _YPYEHSYGL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7554931640625 2 564.753464 1127.49238 0.7357 0.00041549 0.059753 3.3746E-05 0.79546 0.00044924 564.7534004480493 42.997 0.30506 42.997 42.816 43.121 0 43 15 4 0 0 0 0.0090851 1 23279 23279 85.357 56.87 1 19324000 79922 3470 53453 54581 93082 93082 -0.06627126690386831 YPYEHSYGL 9 Unmodified _YPYEHSYGL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.2540893554688 2 564.753464 1127.49238 0.36303 0.00020502 -0.024624 -1.3907E-05 0.33841 0.00019112 564.7533536330326 43.299 0.22372 42.988 42.863 43.086 -0.31039 17 10 2 0 0 0 0.0048787 1 23035 23035 117.6 87.374 1 5723800 79923 3470 53453 54581 93083 93083 -0.06627126690386831 YPYEHSYGL 9 Unmodified _YPYEHSYGL_ 0 0 0 nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 nc|ENSG00000119787|Q8NHH9-5|ATL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.7531127929688 2 564.753464 1127.49238 0.98711 0.00055748 -0.093133 -5.2597E-05 0.89398 0.00050488 564.7533971645134 48.708 0.4042 43.312 43.101 43.505 -5.3961 46 23 2 0 0 0 0.0048787 1 30414 30414 117.6 85.293 1 55627000 79924 3470 53453 54581 93084 93084 -0.06627126690386831 YPYFQVGH 8 Unmodified _YPYFQVGH_ 0 0 0 ENSG00000112144|ENST00000676107|CILK1 ENSG00000112144|ENST00000676107|CILK1 ENSG00000112144|ENST00000676107|CILK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.7440490722656 2 505.74016 1009.46577 0.74591 0.00037724 0.073996 3.7423E-05 0.8199 0.00041466 505.74031663634514 74.144 0.75073 74.144 73.638 74.388 0 52 33 2 0 0 0 0.80232 1 41110 41110 5.2307 0.90143 1 1839400 79925 2863 53454 54582 93085 93085 -0.03858770791043753 YPYGEKQDEF 10 Unmodified _YPYGEKQDEF_ 0 0 0 ENSG00000089248|ENST00000261735|ERP29 ENSG00000089248|ENST00000261735|ERP29 ENSG00000089248|ENST00000261735|ERP29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 638.2803344726562 2 638.280043 1274.54553 -0.54885 -0.00035032 0.64857 0.00041397 0.099716 6.3647E-05 638.280311855441 35.001 0.30801 35.001 34.882 35.19 0 26 15 2 0 0 0 0.044582 1 18492 18492 78.06 45.755 1 4085700 79926 1525 53455 54583 93086 93086 -0.08075793698367306 YPYGGSGFGSY 11 Unmodified _YPYGGSGFGSY_ 0 0 0 nc|ENSG00000197822|Q16625-2|OCLN;nc|ENSG00000197822|Q16625-3|OCLN;ENSG00000197822|ENST00000396442|OCLN nc|ENSG00000197822|Q16625-2|OCLN nc|ENSG00000197822|Q16625-2|OCLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.7428588867188 2 577.743096 1153.47164 0.46319 0.0002676 0.9006 0.00052031 1.3638 0.00078792 577.7422970361336 52.789 0.33662 52.337 52.179 52.515 -0.45173 30 16 3 0 0 0 0.54936 2 28560 28466;28560 13.906 1.4806 1 2075900 79927 10007 53456 54584 93087;93088 93088 -0.09895717070025967 YPYHSTCF 8 Unmodified _YPYHSTCF_ 0 0 0 REV__ENST00000438529.1_1_7:63573643-63575167:+|nuORF REV__ENST00000438529.1_1_7:63573643-63575167:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 509.2096557617188 2 509.210378 1016.4062 0.27454 0.0001398 -1.9291 -0.00098231 -1.6545 -0.00084251 509.20959054740064 71.643 0.34149 71.167 70.999 71.341 -0.47609 46 13 5 0 0 0 0.80624 1 39296 39296 2.8892 1.045 1 1691300 + 79928 27055 53457 54585 93089 93089 -0.10134409796739874 YPYICKCI 8 Unmodified _YPYICKCI_ 0 0 0 REV__ENST00000471534.1_1_3:122458993-122459134:-|nuORF REV__ENST00000471534.1_1_3:122458993-122459134:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.7831115722656 2 501.742999 1001.47145 0.17105 8.5825E-05 3.2921 0.0016518 3.4632 0.0017376 501.7452506244641 86.15 0.20358 85.647 85.518 85.722 -0.50318 9 7 2 0 0 0 8.7369 1 47119 47119 2.3027 0.24298 1 206970 + 79929 27493 53458 54586 93090 93090 -0.029231315952529258 YPYLADRHY 9 Unmodified _YPYLADRHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.861328125 3 399.861096 1196.56146 -0.69794 -0.00027908 -0.28686 -0.0001147 -0.9848 -0.00039378 399.8611212956958 34.154 0.52464 34.154 33.841 34.365 0 65 26 3 0 0 0 0.047788 3 17858 17858;17961;17967 42.312 30.138 1 18049000 79930 1179 53459 54587 93091;93092;93093 93091 -0.028960426707953957 YPYLADRHY 9 Unmodified _YPYLADRHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 399.8608093261719 3 399.861096 1196.56146 -0.23246 -9.2953E-05 -1.1333 -0.00045317 -1.3658 -0.00054612 399.8610253581853 34.346 0.44864 34.155 33.843 34.291 -0.19131 41 17 3 0 0 0 0.013041 2 17958 17852;17958 57.249 45.074 1 6109000 79931 1179 53459 54587 93094;93095 93095 -0.028960426707953957 YPYLADRHY 9 Unmodified _YPYLADRHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.2884521484375 2 599.288005 1196.56146 NaN NaN NaN NaN NaN NaN NaN 34.447 1 34.256 33.756 34.756 -0.19131 0 0 0 0.61214 1 17993 17993 12.241 3.4953 1 79932 1179 53459 54587 93096 93096 -0.028960426707953957 YPYLADRHY 9 Unmodified _YPYLADRHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 399.861328125 3 399.861096 1196.56146 1.1067 0.00044254 -0.57197 -0.00022871 0.53477 0.00021383 399.86084008315197 38.099 0.61503 33.73 33.364 33.98 -4.3689 90 36 3 0 0 0 0.020973 3 22398 22268;22398;22527 49.527 37.353 1 50792000 79933 1179 53459 54587 93097;93098;93099 93098 -0.028960426707953957 YPYLADRHY 9 Unmodified _YPYLADRHY_ 0 0 0 ENST00000541475.5_1_11:114278100-114278526:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7 ENST00000541475.5_1_11:114278100-114278526:+|nuORF ENST00000541475.5_1_11:114278100-114278526:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.287353515625 2 599.288005 1196.56146 0.41839 0.00025074 -0.81852 -0.00049053 -0.40013 -0.00023979 599.2871419198913 38.055 0.39676 33.686 33.473 33.87 -4.3689 36 23 2 0 0 0 0.0082353 2 22335 22335;22463 96.111 59.984 1 9311200 79934 1179 53459 54587 93100;93101 93100 -0.028960426707953957 YPYLESLVKF 10 Unmodified _YPYLESLVKF_ 0 0 0 HSD17B13|p.S17P|1|0.17|ENSG00000170509|chr4:87322793-87322793|A/G|missense_variant HSD17B13|p.S17P|1|0.17|ENSG00000170509|chr4:87322793-87322793|A/G|missense_variant HSD17B13|p.S17P|1|0.17|ENSG00000170509|chr4:87322793-87322793|A/G|missense_variant MSMS AL20221201_MKP_PDAC_01 4 420.2288208007812 3 420.228785 1257.66453 NaN NaN NaN NaN NaN NaN NaN 17.204 1 14.617 14.117 15.117 -2.5866 0 0 0 0.80141 1 8975 8975 7.4771 4.1574 1 79935 15928 53460 54588 93102 93102 0.04600024997125729 YPYNAPTVKF 10 Unmodified _YPYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 600.3078002929688 2 600.308406 1198.60226 0.28022 0.00016822 -0.15164 -9.1032E-05 0.12858 7.7187E-05 600.3081641116264 54.134 0.27657 53.667 53.526 53.803 -0.46664 38 13 4 0 0 0 0.033027 1 29294 29294 84.522 70.616 1 13382000 79936 8480 53461 54589 93103 93103 0.010902986487963062 YPYNAPTVKF 10 Unmodified _YPYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.306396484375 2 600.308406 1198.60226 -0.39568 -0.00023753 -0.91283 -0.00054798 -1.3085 -0.00078551 600.8092491879797 53.805 0.26027 53.738 53.622 53.882 -0.066936 39 16 3 0 0 0 0.033027 2 29167 29167;29275 84.522 60.732 1 9113400 79937 8480 53461 54589 93104;93105 93104 0.010902986487963062 YPYNAPTVKF 10 Unmodified _YPYNAPTVKF_ 0 0 0 nc|ENSG00000175063|O00762-2|UBE2C;nc|ENSG00000175063|O00762-3|UBE2C;ENSG00000175063|ENST00000356455|UBE2C nc|ENSG00000175063|O00762-2|UBE2C nc|ENSG00000175063|O00762-2|UBE2C MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.3075561523438 2 600.308406 1198.60226 0.25923 0.00015562 -0.95471 -0.00057312 -0.69549 -0.00041751 600.3076445919585 59.77 0.72365 53.655 53.219 53.943 -6.1147 91 40 3 0 0 0 0.0024136 2 38365 38365;38517 132.38 103.89 1 108030000 79938 8480 53461 54589 93106;93107 93106 0.010902986487963062 YPYNPQVF 8 Unmodified _YPYNPQVF_ 0 0 0 REV__nc|nan|Q6P1W5-2|C1orf94 REV__nc|nan|Q6P1W5-2|C1orf94 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 514.2463989257812 2 514.247818 1026.48108 0.3474 0.00017865 -1.5385 -0.00079116 -1.1911 -0.00061251 514.2469049190349 70.838 0.43362 70.36 70.202 70.636 -0.47735 33 19 2 0 0 0 0.72953 1 38791 38791 14.582 2.0501 1 1117400 + 79939 20589 53462 54590 93108 93108 -0.031099039938681017 YPYPGELTMM 10 2 Oxidation (M) _YPYPGELTM(Oxidation (M))M(Oxidation (M))_ YPYPGELTM(1)M(1) YPYPGELTM(46)M(46) 0 0 2 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1;ENST00000481163.1_1_6:106546960-106547465:+|nuORF nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 617.2605590820312 2 617.26195 1232.50935 0.60968 0.00037633 0.8962 0.00055319 1.5059 0.00092952 617.2620044937144 49.258 0.23393 49.258 49.062 49.296 0 17 10 2 0 0 0 0.1028 1 27088 27088 46.021 30.174 1 2995100 79940 794 53463 54591 93109 93109 123;124 -0.09760710191085309 YPYPGELTMM 10 2 Oxidation (M) _YPYPGELTM(Oxidation (M))M(Oxidation (M))_ 0 0 2 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1;ENST00000481163.1_1_6:106546960-106547465:+|nuORF nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 617.26195 1232.50935 0.9187 0.00056708 0.57305 0.00035372 1.4918 0.0009208 617.2619923976623 49.875 0.36886 49.483 49.238 49.607 -0.3923 0.11224 -4.7549E-05 NaN 46.021 28 18 2 NaN NaN NaN NaN 0 NaN NaN 0 1889400 79941 794 53463 54591 123;124 -0.09760710191085309 YPYPGELTMM 10 Unmodified _YPYPGELTMM_ 0 0 0 nc|ENSG00000057657|O75626-2|PRDM1;ENSG00000057657|ENST00000369096|PRDM1;nc|ENSG00000057657|O75626-3|PRDM1;ENST00000481163.1_1_6:106546960-106547465:+|nuORF nc|ENSG00000057657|O75626-2|PRDM1 nc|ENSG00000057657|O75626-2|PRDM1 MSMS AL20221201_MKP_PDAC_01 4 601.2667846679688 2 601.267035 1200.51952 NaN NaN NaN NaN NaN NaN NaN 82.801 1 76.625 76.125 77.125 -6.1757 0 0 0 0.13561 1 54412 54412 48.346 32.499 1 79942 794 53463 54592 93110 93110 -0.07272102465867647 YPYPPPPPEF 10 Unmodified _YPYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2942504882812 2 602.289682 1202.56481 NaN NaN NaN NaN NaN NaN NaN 68.02 1 68.02 67.52 68.52 0 0 0 0 0.69334 1 37927 37927 16.942 10.219 1 79943 4413 53464 54593 93111 93111 -0.028367926168129998 YPYPPPPPEF 10 Unmodified _YPYPPPPPEF_ 0 0 0 ENSG00000132471|ENST00000254806|WBP2;ENST00000416574.6_1_17:73843478-73851408:-|nuORF ENSG00000132471|ENST00000254806|WBP2 ENSG00000132471|ENST00000254806|WBP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.289794921875 2 602.289682 1202.56481 0.30143 0.00018155 -0.12846 -7.7368E-05 0.17298 0.00010418 602.7911439679125 75.002 0.81039 68.826 68.473 69.284 -6.1757 82 43 2 0 0 0 0.0044003 4 49159 48855;49025;49159;49299 100.37 82.225 1 20324000 79944 4413 53464 54593 93112;93113;93114;93115 93114 -0.028367926168129998 YPYQGYPQY 9 Unmodified _YPYQGYPQY_ 0 0 0 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.7618408203125 2 589.761289 1177.50803 0.25171 0.00014845 0.72809 0.0004294 0.9798 0.00057785 589.7618523856645 46.698 0.25463 46.698 46.544 46.799 0 27 11 3 0 0 0 0.087258 1 25511 25511 36.044 15.591 1 3751200 79945 3506 53465 54594 93116 93116 -0.07362840173323093 YPYQGYPQY 9 Unmodified _YPYQGYPQY_ 0 0 0 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7615356445312 2 589.761289 1177.50803 1.1112 0.00065532 -0.58081 -0.00034254 0.53036 0.00031278 589.7610760127125 53.708 0.33673 47.903 47.729 48.066 -5.8042 36 21 2 0 0 0 0.0090851 1 33951 33951 85.357 54.088 1 20533000 79946 3506 53465 54594 93117 93117 -0.07362840173323093 YPYQGYPQY 9 Unmodified _YPYQGYPQY_ 0 0 0 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 ENSG00000120306|ENST00000261811|CYSTM1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 589.761289 1177.50803 0.66051 0.00038955 -0.81248 -0.00047917 -0.15197 -8.9626E-05 589.7608051768508 47.11 0.25331 46.774 46.681 46.935 -0.33664 0.037854 -0.0008043 NaN 36.044 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4150400 79947 3506 53465 54594 -0.07362840173323093 YPYSDAINTY 10 Unmodified _YPYSDAINTY_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000472776.1_1_2:122122630-122145458:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.768310546875 2 603.769311 1205.52407 -0.10068 -6.0787E-05 0.21121 0.00012752 0.11053 6.6733E-05 603.769446965175 50.452 0.29923 50.452 50.282 50.582 0 33 13 3 0 0 0 0.24511 1 27776 27776 43.858 30.816 1 4646100 79948 1119 53466 54595 93118 93118 -0.07047178727088976 YPYSDAINTY 10 Unmodified _YPYSDAINTY_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000472776.1_1_2:122122630-122145458:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.2713623046875 2 603.769311 1205.52407 0.8798 0.0005312 -0.50067 -0.00030229 0.37913 0.00022891 603.7691811028301 58.516 0.33849 52.442 52.28 52.618 -6.0745 27 18 2 0 0 0 0.14294 1 37499 37499 56.177 44.537 1 8840900 79949 1119 53466 54595 93119 93119 -0.07047178727088976 YPYSDAINTY 10 Unmodified _YPYSDAINTY_ 0 0 0 nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1;nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;ENST00000472776.1_1_2:122122630-122145458:-|nuORF nc|ENSG00000074054|Q7Z460|CLASP1 nc|ENSG00000074054|Q7Z460|CLASP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 603.769311 1205.52407 0.13516 8.1606E-05 1.1553 0.00069752 1.2904 0.00077913 603.7700262501165 51.135 0.19743 50.721 50.619 50.817 -0.41351 0.13479 0.00099232 NaN 43.858 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1041200 79950 1119 53466 54595 -0.07047178727088976 YPYSFWIGRN 10 Unmodified _YPYSFWIGRN_ 0 0 0 ENSG00000108797|ENST00000264638|CNTNAP1 ENSG00000108797|ENST00000264638|CNTNAP1 ENSG00000108797|ENST00000264638|CNTNAP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8824157714844 3 434.880379 1301.61931 NaN NaN NaN NaN NaN NaN NaN 18.14 1 18.146 17.646 18.646 0.0060463 0 0 0 0.76313 1 9180 9180 8.4443 0 1 79951 2606 53467 54596 93120 93120 -0.019437807453869027 YPYSNPVYY 9 Unmodified _YPYSNPVYY_ 0 0 0 REV__ENSG00000171209|ENST00000304954|CSN3 REV__ENSG00000171209|ENST00000304954|CSN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.264404296875 2 583.263665 1164.51278 0.15443 9.0076E-05 0.13438 7.8381E-05 0.28882 0.00016846 583.2637890170417 79.893 0.25459 79.893 79.775 80.03 0 24 12 3 0 0 0 0.53666 1 44337 44337 5.2307 0.90143 1 1204300 + 79952 22542 53468 54597 93121 93121 -0.06289956030582289 YPYSTGFL 8 Unmodified _YPYSTGFL_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 949.4591064453125 1 947.450911 946.443634 -0.42459 -0.00040228 0.70852 0.00067129 0.28393 0.00026901 947.4511712047616 55 0.2289 55 54.92 55.149 0 18 9 3 0 0 0 0.80624 1 30574 30574 2.8892 0 1 1596300 + 79953 19938 53469 54598 93122 93122 -0.031729952594673705 YPYTETQMY 9 Oxidation (M) _YPYTETQM(Oxidation (M))Y_ YPYTETQM(1)Y YPYTETQM(71)Y 0 0 1 nc|ENSG00000080298|P48380-2|RFX3;nc|ENSG00000080298|P48380-3|RFX3;ENSG00000080298|ENST00000617270|RFX3 nc|ENSG00000080298|P48380-2|RFX3 nc|ENSG00000080298|P48380-2|RFX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.2501831054688 2 606.249897 1210.48524 0.056801 3.4436E-05 -0.34834 -0.00021118 -0.29154 -0.00017675 606.2494355107984 37.049 0.42159 37.049 36.837 37.259 0 55 20 4 0 0 0 0.013472 2 19643 19643;19744 70.716 54.868 1 7195400 79954 16056 53470 54599 93123;93124 93123 1789 -0.1115822735312122 YPYTITEY 8 Unmodified _YPYTITEY_ 0 0 0 nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1 nc|ENSG00000154217|Q9UKF7-2|PITPNC1 nc|ENSG00000154217|Q9UKF7-2|PITPNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2456665039062 2 525.244941 1048.47533 0.13495 7.0883E-05 -0.28497 -0.00014968 -0.15002 -7.8797E-05 525.2451935260453 55.216 0.31895 55.216 54.986 55.305 0 35 13 3 0 0 0 0.64035 1 30621 30621 22.453 7.8709 1 3164700 79955 6305 53471 54600 93125 93125 -0.04697047296190249 YPYTPRKEDEL 11 Unmodified _YPYTPRKEDEL_ 0 0 0 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 471.2361145019531 3 470.901508 1409.6827 -0.39382 -0.00018545 0.33796 0.00015915 -0.055862 -2.6306E-05 470.90168624856875 30.572 0.30828 30.572 30.402 30.711 0 49 14 5 0 0 0 0.39848 2 15850 15850;15949 22.109 12.345 1 11342000 79956 6325 53472 54601 93126;93127 93126 -0.0057588481881794 YPYTPRKEDEL 11 Unmodified _YPYTPRKEDEL_ 0 0 0 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 470.9016723632812 3 470.901508 1409.6827 0.78345 0.00036893 -0.52659 -0.00024797 0.25686 0.00012096 470.90140770554075 34.645 0.33398 30.55 30.384 30.718 -4.0951 48 19 3 0 0 0 0.35681 1 19981 19981 23.964 7.3983 1 20607000 79957 6325 53472 54601 93128 93128 -0.0057588481881794 YPYVIQEL 8 Unmodified _YPYVIQEL_ 0 0 0 ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A ENSG00000178741|ENST00000322347|COX5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7722778320312 2 512.771126 1023.5277 NaN NaN NaN NaN NaN NaN NaN 73.645 1 73.645 73.145 74.145 0 0 0 0 0.9706 1 41000 41000 6.3541 3.4649 1 79958 8770 53473 54602 93129 93129 0.016875358374250027 YPYVYYKI 8 Unmodified _YPYVYYKI_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7887573242188 2 554.789318 1107.56408 0.63922 0.00035463 -1.258 -0.00069792 -0.61877 -0.00034329 554.7888332879518 56.895 0.20821 56.895 56.835 57.043 0 15 8 2 0 0 0 0.67481 1 31682 31682 19.439 4.6007 1 2125700 79959 6369 53474 54603 93130 93130 0.014604127341499407 YPYVYYKI 8 Unmodified _YPYVYYKI_ 0 0 0 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 ENSG00000155097|ENST00000518738|ATP6V1C1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 554.789318 1107.56408 0.65829 0.00036521 -1.4383 -0.00079794 -0.77998 -0.00043273 554.7893874078272 57.536 0.30467 57.046 56.901 57.206 -0.48974 0.07563 -0.00013998 NaN 19.439 26 14 2 NaN NaN NaN NaN 0 NaN NaN 0 3107000 79960 6369 53474 54603 0.014604127341499407 YQASLLSF 8 Unmodified _YQASLLSF_ 0 0 0 ENST00000488423.1_1_3:16301664-16301853:-|nuORF ENST00000488423.1_1_3:16301664-16301853:-|nuORF ENST00000488423.1_1_3:16301664-16301853:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 928.4769897460938 1 928.47746 927.470183 0.39543 0.00036715 1.0922 0.0010141 1.4876 0.0013812 928.4788325726466 71.101 0.133 70.624 70.526 70.659 -0.47735 7 5 2 0 0 0 0.80383 1 38914 38914 4.3292 0 1 319740 79961 14221 53475 54604 93131 93131 0.00354693631857117 YQAYLHSI 8 Unmodified _YQAYLHSI_ 0 0 0 REV__PDK1|p.R363H|1|0.25|ENSG00000152256|chr2:172592966-172592966|G/A|missense_variant REV__PDK1|p.R363H|1|0.25|ENSG00000152256|chr2:172592966-172592966|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 497.756103515625 2 497.753267 993.491981 NaN NaN NaN NaN NaN NaN NaN 48.597 1 43.201 42.701 43.701 -5.3961 0 0 0 0.65904 1 30286 30286 30.225 0 1 + 79962 30070 53476 54605 93132 93132 -0.005025016195759235 YQCNKCGKAF 10 Unmodified _YQCNKCGKAF_ 0 0 0 ENSG00000197497|ENST00000396424|ZNF665 ENSG00000197497|ENST00000396424|ZNF665 ENSG00000197497|ENST00000396424|ZNF665 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2626953125 2 581.262619 1160.51068 NaN NaN NaN NaN NaN NaN NaN 66.686 1 66.686 66.186 67.186 0 0 0 0 0.97302 1 37193 37193 3.5965 1.2938 1 79963 9961 53477 54606 93133 93133 -0.0631503131169211 YQCSECGKCF 10 Unmodified _YQCSECGKCF_ 0 0 0 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8143310546875 3 389.813772 1166.41949 0.48644 0.00018962 -0.22715 -8.8545E-05 0.25929 0.00010107 390.14791011472965 15.286 0.6028 12.759 12.462 13.065 -2.5273 181 112 2 0 0 0 0.70734 2 7912 7708;7912 2.086 0.71303 1 8506700 79964 7352 53478 54607 93134;93135 93135 -0.15706663071318872 YQCSECGKCF 10 Unmodified _YQCSECGKCF_ 0 0 0 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 ENSG00000165512|ENST00000298299|ZNF22 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8132934570312 3 389.813772 1166.41949 0.48707 0.00018987 -0.15163 -5.9109E-05 0.33543 0.00013076 390.1480487552503 15.848 0.21888 13.291 13.148 13.367 -2.557 76 52 2 0 0 0 0.70734 1 8151 8151 2.086 1.0145 1 3963300 79965 7352 53478 54607 93136 93136 -0.15706663071318872 YQDDFEYWQ 9 Unmodified _YQDDFEYWQ_ 0 0 0 REV__ENSG00000136878|ENST00000372429|USP20 REV__ENSG00000136878|ENST00000372429|USP20 MSMS AL20221201_MKP_PDAC_01 4 647.2564697265625 2 647.256568 1292.49858 NaN NaN NaN NaN NaN NaN NaN 3.2908 1 0.8088 0.3088 1.3088 -2.482 0 0 0 0.8622 1 1674 1674 0 0 1 + 79966 20193 53479 54608 93137 93137 -0.13596653249510382 YQDDLQSLL 9 Unmodified _YQDDLQSLL_ 0 0 0 REV__nc|ENSG00000115415|P42224-2|STAT1 REV__nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 547.771728515625 2 547.771854 1093.52915 -0.25087 -0.00013742 1.0333 0.00056602 0.78244 0.0004286 547.7723869077623 76.813 0.39103 76.334 76.149 76.54 -0.47945 65 18 5 0 0 0 0.25681 1 42002 42002 19.257 3.4098 1 11031000 + 79967 18978 53480 54609 93138 93138 -0.01386874864465426 YQDESYHVAV 10 Unmodified _YQDESYHVAV_ 0 0 0 ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-2|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.8482360839844 3 404.184016 1209.53022 NaN NaN NaN NaN NaN NaN NaN 17.688 1 17.688 17.188 18.188 0 0 0 0 0.99091 1 8735 8735 0.69767 0.2894 1 79968 7304 53481 54610 93139 93139 -0.06616660495592441 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 439.8428344726562 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 8.4784 1 8.4784 7.9784 8.9784 0 0 0 0 0.9435 1 4045 4045 0 0 1 + 79969 30105 53482 54611 93140 93140 -0.13642993866756115 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8432006835938 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 1.3298 1 1.3092 0.80918 1.8092 -0.020623 0 0 0 0.9435 1 690 690 0 0 1 + 79970 30105 53482 54611 93141 93141 -0.13642993866756115 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8428955078125 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 2.5628 1 2.5458 2.0458 3.0458 -0.017019 0 0 0 0.9435 1 1303 1303 0 0 1 + 79971 30105 53482 54611 93142 93142 -0.13642993866756115 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8442077636719 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 3.0008 1 2.9885 2.4885 3.4885 -0.012334 0 0 0 0.9435 1 1523 1523 0 0 1 + 79972 30105 53482 54611 93143 93143 -0.13642993866756115 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8443298339844 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 3.389 1 3.3767 2.8767 3.8767 -0.012334 0 0 0 0.9435 1 1721 1721 0 0 1 + 79973 30105 53482 54611 93144 93144 -0.13642993866756115 YQDFGNRDMDG 11 Unmodified _YQDFGNRDMDG_ 0 0 0 REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant REV__SOX7|p.E331G|1|0.18|ENSG00000171056|chr8:10725913-10725913|T/C|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 439.8433227539062 3 439.843665 1316.50916 NaN NaN NaN NaN NaN NaN NaN 4.7696 1 4.7633 4.2633 5.2633 -0.0062971 0 0 0 0.9435 1 2409 2409 0 0 1 + 79974 30105 53482 54611 93145 93145 -0.13642993866756115 YQDPSVLYI 9 Unmodified _YQDPSVLYI_ 0 0 0 nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;nc|ENSG00000061273|Q8WUI4-8|HDAC7;ENST00000471235.1_1_12:48181791-48181944:-|nuORF;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7 nc|ENSG00000061273|Q8WUI4-3|HDAC7 nc|ENSG00000061273|Q8WUI4-3|HDAC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.27880859375 2 549.279315 1096.54408 0.20802 0.00011426 -0.60711 -0.00033347 -0.39909 -0.00021921 549.2790652951726 72.004 0.2341 72.004 71.84 72.074 0 16 10 2 0 0 0 0.34999 1 40083 40083 14.838 0.93222 1 722770 79975 835 53483 54612 93146 93146 -0.00033382996502950846 YQEEVMTDY 9 Unmodified _YQEEVMTDY_ 0 0 0 REV__ENSG00000148411|ENST00000277554|NACC2 REV__ENSG00000148411|ENST00000277554|NACC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7409057617188 2 589.239529 1176.46451 0.448 0.00026398 -0.586 -0.0003453 -0.138 -8.1317E-05 589.2394461209984 87.523 0.36542 87.019 86.812 87.177 -0.50423 40 16 4 0 0 0 0.58865 1 47938 47938 2.0598 0 1 1503500 + 79976 20951 53484 54613 93147 93147 -0.11666817732771051 YQEFFKSNEIF 11 Unmodified _YQEFFKSNEIF_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 726.3452758789062 2 726.345717 1450.67688 1.0089 0.00073278 0.088937 6.4599E-05 1.0978 0.00079738 726.3457482514824 94.129 0.4007 87.954 87.718 88.118 -6.1757 49 22 3 0 0 0 0.5229 1 62353 62353 15.248 0 1 15191000 + 79977 19763 53485 54614 93148 93148 -0.030429833304651766 YQEFVPQFIY 10 Unmodified _YQEFVPQFIY_ 0 0 0 REV__ENSG00000225973|ENST00000436697|PIGBOS1 REV__ENSG00000225973|ENST00000436697|PIGBOS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3267822265625 2 667.326796 1332.63904 0.44583 0.00029752 0.60645 0.0004047 1.0523 0.00070222 667.3269016952927 78.036 0.30543 71.86 71.668 71.973 -6.1757 37 16 3 0 0 0 0.40136 1 51129 51129 21.537 1.1224 1 14151000 + 79978 24390 53486 54615 93149 93149 -0.01397449525279626 YQEIERLWEP 10 Unmodified _YQEIERLWEP_ 0 0 0 REV__ENSG00000137502|ENST00000527633|RAB30 REV__ENSG00000137502|ENST00000527633|RAB30 MULTI-MSMS AL20221201_MKP_PDAC_01 4 682.3410034179688 2 681.838059 1361.66157 1.1556 0.00078792 -0.29857 -0.00020358 0.85702 0.00058435 681.8379908733158 69.421 0.52949 63.245 62.995 63.525 -6.1757 85 28 4 0 0 0 0.59286 1 45349 45349 13.042 1.5478 1 100190000 + 79979 20247 53487 54616 93150 93150 -0.004798501276582101 YQENSNFLFL 10 Unmodified _YQENSNFLFL_ 0 0 0 ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC ENSG00000114771|ENST00000232892|AADAC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8074340820312 2 637.806228 1273.5979 0.26012 0.00016591 0.25151 0.00016042 0.51163 0.00032632 637.8064449611126 77.992 0.2872 78.044 77.89 78.177 0.052444 31 11 4 0 0 0 0.46514 1 43027 43027 18.146 3.3081 1 11696000 79980 3061 53488 54617 93151 93151 -0.027952105647727876 YQFAKYRSF 9 Unmodified _YQFAKYRSF_ 0 0 0 nc|ENSG00000160339|Q15485-2|FCN2;ENSG00000160339|ENST00000291744|FCN2 nc|ENSG00000160339|Q15485-2|FCN2 nc|ENSG00000160339|Q15485-2|FCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.3155517578125 2 605.306198 1208.59784 NaN NaN NaN NaN NaN NaN NaN 75.709 1 75.232 74.732 75.732 -0.47714 0 0 0 0.36554 1 41445 41445 21.747 0.20967 1 79981 6721 53489 54618 93152 93152 0.0018883422587805399 YQFEQFNF 8 Unmodified _YQFEQFNF_ 0 0 0 REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1 REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.1989135742188 2 561.748182 1121.48181 0.341 0.00019156 -1.6906 -0.00094966 -1.3495 -0.00075811 561.7476027192688 49.073 0.24277 49.073 48.952 49.194 0 18 11 2 0 0 0 8.7369 1 27003 27003 14.582 4.3983 1 2879200 + 79982 29513 53490 54619 93153 93153 -0.07407109344808305 YQFLRIGP 8 Unmodified _YQFLRIGP_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.5947265625 2 497.279452 992.544351 NaN NaN NaN NaN NaN NaN NaN 93.573 1 93.116 92.616 93.616 -0.4574 0 0 0 0.97444 1 51133 51133 0.79363 0 1 + 79983 22663 53491 54620 93154 93154 0.04778081514029964 YQFPDCDSDE 10 Unmodified _YQFPDCDSDE_ 0 0 0 ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENSG00000108387|ENST00000672673|SEPTIN4;ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENSG00000108387|ENST00000672673|SEPTIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 609.7177124023438 2 609.716418 1217.41828 0.25229 0.00015382 0.098281 5.9923E-05 0.35057 0.00021375 609.7170079796894 46.686 0.318 46.686 46.501 46.819 0 41 14 4 0 0 0 0.66569 1 25492 25492 6.7232 3.4419 1 5352500 79984 2563;13184 53492 54621 93155 93155 -0.1817288263489445 YQFPDCDSDE 10 Unmodified _YQFPDCDSDE_ 0 0 0 ENSG00000108387|ENST00000672673|SEPTIN4;nc|ENSG00000108387|O43236-5|SEPTIN4;nc|ENSG00000108387|O43236-2|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-3|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-4|SEPTIN4;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENSG00000108387|ENST00000672673|SEPTIN4;ENST00000426861.5_1_17:56598198-56599363:-|nuORF ENSG00000108387|ENST00000672673|SEPTIN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.7159423828125 2 609.716418 1217.41828 0.71055 0.00043323 0.19104 0.00011648 0.90159 0.00054972 609.7164728021809 47.091 0.23355 46.754 46.642 46.876 -0.33664 20 11 2 0 0 0 0.60623 1 25251 25251 10.824 7.5426 1 2451500 79985 2563;13184 53492 54621 93156 93156 -0.1817288263489445 YQFPGFPAAAY 11 Unmodified _YQFPGFPAAAY_ 0 0 0 DHX8-MSI2|2|fusion;ENSG00000153944|ENST00000284073|MSI2 DHX8-MSI2|2|fusion DHX8-MSI2|2|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 616.2935791015625 2 616.292756 1230.57096 0.79616 0.00049067 0.21605 0.00013315 1.0122 0.00062382 616.2932047113492 40.676 0.5137 36.146 35.904 36.418 -4.5294 83 31 4 0 0 0 0.46578 1 24436 24436 18.146 1.0335 1 42129000 79986 235 53493 54622 93157 93157 -0.03510274385280354 YQFQELYYWYL 11 Unmodified _YQFQELYYWYL_ 0 0 0 REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF REV__ENST00000523948.5_1_8:56686169-56737149:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.3771362304688 2 808.377017 1614.73948 NaN NaN NaN NaN NaN NaN NaN 101.65 1 101.65 101.15 102.15 0 0 0 0 0.9435 1 56076 56076 0 0 1 + 79987 20252 53494 54623 93158 93158 -0.0432983726227576 YQFYKYWCRRE 11 Unmodified _YQFYKYWCRRE_ 0 0 0 REV__nc|ENSG00000215296|A8MYB1|TMCO5B REV__nc|ENSG00000215296|A8MYB1|TMCO5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 821.3855590820312 2 821.385185 1640.75582 NaN NaN NaN NaN NaN NaN NaN 55.095 1 55.095 54.595 55.595 0 0 0 0 0.9435 1 30599 30599 0 0 1 + 79988 29941 53495 54624 93159 93159 -0.03893034577185972 YQHIYARF 8 Unmodified _YQHIYARF_ 0 0 0 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7813110351562 2 549.279983 1096.54541 0.34069 0.00018713 0.13968 7.6723E-05 0.48037 0.00026386 549.2800026318658 78.392 0.82105 78.392 77.965 78.786 0 102 37 4 0 0 0 0.80676 1 43425 43425 2.5775 0 1 7917400 + 79989 29563 53496 54625 93160 93160 0.0010029588295310532 YQHLFTRI 8 Unmodified _YQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2957153320312 2 539.295633 1076.57671 -0.039494 -2.1299E-05 -0.62526 -0.0003372 -0.66475 -0.0003585 539.7964963724324 45.048 0.26927 45.026 44.875 45.144 -0.022064 21 14 2 0 0 0 0.053363 1 24154 24154 144.35 82.993 1 42783000 79990 10702 53497 54626 93161 93161 0.04148868917036452 YQHLFTRI 8 Unmodified _YQHLFTRI_ 0 0 0 ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF ENSG00000242802|ENST00000649063|AP5Z1 ENSG00000242802|ENST00000649063|AP5Z1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2959594726562 2 539.295633 1076.57671 0.70091 0.000378 -0.26714 -0.00014407 0.43377 0.00023393 539.2951844976651 49.914 0.5134 44.375 44.094 44.607 -5.5391 66 32 3 0 0 0 0.054591 2 31235 31235;31383 139.14 80.46 1 39571000 79991 10702 53497 54626 93162;93163 93162 0.04148868917036452 YQHLKAEFK 9 Unmodified _YQHLKAEFK_ 0 0 0 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 ENSG00000102189|ENST00000322349|EEA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.54541015625 3 388.545108 1162.61349 -0.12114 -4.7069E-05 0.21352 8.2961E-05 0.092375 3.5892E-05 388.5451177662803 22.342 0.39776 22.365 22.204 22.602 0.022896 41 17 4 0 0 0 0.15882 1 11344 11344 27.223 8.8501 1 6850100 79992 2026 53498 54627 93164 93164 0.03869120742933774 YQIHKEYLL 9 Unmodified _YQIHKEYLL_ 0 0 0 nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR nc|ENSG00000116984|Q99707-2|MTR nc|ENSG00000116984|Q99707-2|MTR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.888427734375 3 402.888763 1205.64446 -0.25968 -0.00010462 0.67327 0.00027125 0.41359 0.00016663 402.88917595119943 36.993 0.24944 36.743 36.644 36.894 -0.2497 17 10 2 0 0 0 0.25681 1 19427 19427 13.615 6.9845 1 2635200 79993 3272 53499 54628 93165 93165 0.04986274057182527 YQISSADYAL 10 Unmodified _YQISSADYAL_ 0 0 0 REV__nc|ENSG00000145864|P47870-1|GABRB2 REV__nc|ENSG00000145864|P47870-1|GABRB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2745971679688 2 565.771854 1129.52915 0.59241 0.00033517 1.2326 0.00069738 1.825 0.0010326 566.2739785935635 67.255 0.25823 66.772 66.656 66.914 -0.48218 30 11 4 0 0 0 0.60623 1 36757 36757 10.824 1.4765 1 1466200 + 79994 20797 53500 54629 93166 93166 -0.03042874864490841 YQKLQDSSSC 10 Unmodified _YQKLQDSSSC_ 0 0 0 ENSG00000003393|ENST00000264276|ALS2;ENST00000482891.5_1_2:202587756-202633608:-|nuORF;ENST00000494017.5_1_2:202591977-202598136:-|nuORF ENSG00000003393|ENST00000264276|ALS2 ENSG00000003393|ENST00000264276|ALS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 579.3123168945312 2 579.75842 1157.50229 0.77111 0.00044706 0.48132 0.00027905 1.2524 0.0007261 579.758548048753 76.144 0.65879 69.968 69.561 70.219 -6.1757 59 35 3 0 0 0 0.22941 1 49945 49945 13.906 6.6168 1 13041000 79995 269 53501 54630 93167 93167 -0.07016306747300405 YQKQLKQMI 9 Unmodified _YQKQLKQMI_ 0 0 0 ENSG00000204634|ENST00000409318|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;nc|ENSG00000204634|O95759-2|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 ENSG00000204634|ENST00000409318|TBC1D8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.8919067382812 3 393.889998 1178.64816 0.91071 0.00035872 1.1096 0.00043706 2.0203 0.00079578 393.89077741014637 43.204 0.23544 38.439 38.304 38.539 -4.7648 27 16 2 0 0 0 0.16226 1 26186 26186 24.991 0 1 10194000 79996 10314 53502 54631 93168 93168 0.06598620559384472 YQKRCEAF 8 Carbamidomethyl (C) _YQKRC(Carbamidomethyl (C))EAF_ YQKRC(1)EAF YQKRC(120)EAF 0 1 0 ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000466765.1_1_3:53267112-53269174:-|nuORF;ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF ENSG00000163931|ENST00000462138|TKT ENSG00000163931|ENST00000462138|TKT MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.2601318359375 2 551.260933 1100.50731 0.10394 5.7299E-05 -0.83594 -0.00046082 -0.73199 -0.00040352 551.2604521400203 23.186 0.33952 20.407 20.217 20.557 -2.7784 63 30 3 0 0 0 0.077912 2 12557 12447;12557 115.69 71.834 1 18666000 79997 7097 53503 54632 93169;93170 93170 694 -0.038919580940500964 YQKYIARF 8 Unmodified _YQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2991943359375 2 544.798009 1087.58147 0.30219 0.00016464 -0.017082 -9.3062E-06 0.28511 0.00015533 544.7981754509365 40.887 0.23561 40.886 40.773 41.008 -0.0017891 28 11 3 0 0 0 0.10909 1 21804 21804 97.075 64.769 1 5797900 79998 4278;14369 53504 54633 93171 93171 0.0411775305979063 YQKYIARF 8 Unmodified _YQKYIARF_ 0 0 0 ENSG00000130940|ENST00000377022|CASZ1;nc|ENSG00000130940|Q86V15-2|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1;ENST00000496432.6_1_1:10713095-10754402:-|nuORF ENSG00000130940|ENST00000377022|CASZ1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.7988891601562 2 544.798009 1087.58147 0.25906 0.00014114 0.75959 0.00041383 1.0187 0.00055496 544.7983240972065 45.3 0.33412 40.345 40.13 40.464 -4.9549 38 22 2 0 0 0 0.069468 1 27771 27771 123.1 82.648 1 21681000 79999 4278;14369 53504 54633 93172 93172 0.0411775305979063 YQKYKNAI 8 Unmodified _YQKYKNAI_ 0 0 0 ENSG00000172986|ENST00000389617|GXYLT2 ENSG00000172986|ENST00000389617|GXYLT2 ENSG00000172986|ENST00000389617|GXYLT2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 513.7445068359375 2 514.282192 1026.54983 0.22471 0.00011556 0.61265 0.00031508 0.83736 0.00043064 514.2825602271757 79.717 0.36639 79.717 79.475 79.841 0 22 15 2 0 0 0 8.7369 1 44305 44305 5.7604 1.0044 1 349740 80000 8277 53505 54634 93173 93173 0.037617603058379245 YQLGELVKV 9 Unmodified _YQLGELVKV_ 0 0 0 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 ENSG00000130227|ENST00000252512|XPO7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.2770385742188 2 524.8055 1047.59645 0.050905 2.6715E-05 -0.23841 -0.00012512 -0.1875 -9.8403E-05 524.8053024329331 45.036 0.19118 45.036 44.959 45.15 0 20 9 3 0 0 0 0.18482 1 24592 24592 18.146 3.3081 1 6888400 80001 4191 53506 54635 93174 93174 0.07455200137110296 YQLIEYLHK 9 Unmodified _YQLIEYLHK_ 0 0 0 nc|ENSG00000213390|Q14CB8-5|ARHGAP19;nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 nc|ENSG00000213390|Q14CB8-5|ARHGAP19 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 403.2388305664062 3 402.888763 1205.64446 0.36354 0.00014647 0.59471 0.0002396 0.95826 0.00038607 402.8893473042349 41.336 0.32133 36.728 36.547 36.868 -4.6079 29 20 2 0 0 0 0.20358 1 24734 24734 6.6304 0 1 10047000 80002 10432 53507 54636 93175 93175 0.0498627405715979 YQLMTDVFGNY 11 Unmodified _YQLMTDVFGNY_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 450.8727416992188 3 450.872673 1349.59619 NaN NaN NaN NaN NaN NaN NaN 3.6122 1 3.6122 3.1122 4.1122 0 0 0 0 0.94337 1 1750 1750 0.094841 0 1 80003 780 53508 54637 93176 93176 -0.06462587645023632 YQLNHDHGCLY 11 Unmodified _YQLNHDHGCLY_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8684997558594 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 76.719 1 76.719 76.219 77.219 0 0 0 0 0.94301 1 42650 42650 0.094841 0.011491 1 + 80004 18244 53509 54638 93177 93177 -0.08405820353436866 YQLNHDHGCLY 11 Unmodified _YQLNHDHGCLY_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8676147460938 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 81.247 1 81.247 80.747 81.747 0 0 0 0 0.94301 1 45097 45097 0.094841 0.011491 1 + 80005 18244 53509 54638 93178 93178 -0.08405820353436866 YQLNHDHGCLY 11 Unmodified _YQLNHDHGCLY_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8678588867188 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 91.769 1 91.769 91.269 92.269 0 0 0 0 0.94301 1 50748 50748 0.094841 0.011491 1 + 80006 18244 53509 54638 93179 93179 -0.08405820353436866 YQLNHDHGCLY 11 Unmodified _YQLNHDHGCLY_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.866455078125 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 15.143 1 15.129 14.629 15.629 -0.014067 0 0 0 0.94301 1 7416 7416 0.094841 0.011491 1 + 80007 18244 53509 54638 93180 93180 -0.08405820353436866 YQLNHDHGCLY 11 Unmodified _YQLNHDHGCLY_ 0 0 0 REV__ENSG00000102575|ENST00000648477|ACP5 REV__ENSG00000102575|ENST00000648477|ACP5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.8670043945312 3 454.868033 1361.58227 NaN NaN NaN NaN NaN NaN NaN 93.756 1 93.335 92.835 93.835 -0.42044 0 0 0 0.94301 1 51229 51229 0.094841 0.011491 1 + 80008 18244 53509 54638 93181 93181 -0.08405820353436866 YQLVFDFKE 9 Unmodified _YQLVFDFKE_ 0 0 0 REV__ENSG00000135423|ENST00000311966|GLS2 REV__ENSG00000135423|ENST00000311966|GLS2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 594.7988891601562 2 594.800414 1187.58628 NaN NaN NaN NaN NaN NaN NaN 70.377 1 70.377 69.877 70.877 0 0 0 0 0.83329 1 39214 39214 3.5965 0 1 + 80009 20064 53510 54639 93182 93182 -1.4075880926611717E-05 YQLVPFVP 8 Unmodified _YQLVPFVP_ 0 0 0 REV__ENST00000267205.6_1_12:122231735-122231939:-|nuORF REV__ENST00000267205.6_1_12:122231735-122231939:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.7707824707031 2 481.770929 961.527304 0.48706 0.00023465 0.085142 4.1019E-05 0.5722 0.00027567 481.7710070971527 43.443 0.32306 43.427 43.205 43.528 -0.015667 19 14 2 0 0 0 0.80676 1 23241 23241 2.5775 0.27475 1 6917200 + 80010 25111 53511 54640 93183 93183 0.04500160908230555 YQMFPRIF 8 Unmodified _YQMFPRIF_ 0 0 0 REV__nc|ENSG00000136720|O60243-2|HS6ST1 REV__nc|ENSG00000136720|O60243-2|HS6ST1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8565368652344 3 367.856517 1100.54772 NaN NaN NaN NaN NaN NaN NaN 16.829 1 16.829 16.329 17.329 0 0 0 0 0.97444 1 8244 8244 0.45834 0 1 + 80011 20177 53512 54641 93184 93184 0.0014700829638059076 YQNDKITQL 9 Unmodified _YQNDKITQL_ 0 0 0 ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF ENSG00000135111|ENST00000349155|TBX3 ENSG00000135111|ENST00000349155|TBX3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.1989135742188 2 561.793121 1121.57169 0.42946 0.00024127 -0.53812 -0.00030231 -0.10865 -6.1041E-05 561.7929183880636 49.142 0.1522 49.142 49.042 49.194 0 13 6 3 0 0 0 0.20528 1 27003 27003 8.5933 0 1 1719600 80012 4671 53513 54642 93185 93185 0.0157652026375672 YQNHVQHL 8 Unmodified _YQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.7595825195312 2 519.759415 1037.50428 -0.59199 -0.00030769 0.26888 0.00013975 -0.32311 -0.00016794 519.7597401836871 19.334 0.13071 19.357 19.288 19.418 0.023106 18 9 3 0 0 0 0.36356 1 9763 9763 48.346 36.706 1 1201100 80013 35 53514 54643 93186 93186 -0.01297465156517319 YQNHVQHL 8 Unmodified _YQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.7596435546875 2 519.759415 1037.50428 1.2853 0.00066803 -1.06 -0.00055094 0.22529 0.00011709 519.7587924192057 21.376 0.34254 18.642 18.485 18.827 -2.7348 81 32 3 0 0 0 0.054506 2 11388 11388;11504 139.54 79.154 1 15979000 80014 35 53514 54643 93187;93188 93187 -0.01297465156517319 YQNHVQHL 8 Unmodified _YQNHVQHL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 519.759415 1037.50428 -0.18796 -9.7695E-05 -0.60262 -0.00031322 -0.79058 -0.00041091 519.7592373042668 19.453 0.16806 19.453 19.372 19.541 0 0.047849 -0.00036516 NaN 48.346 29 17 2 NaN NaN NaN NaN 0 NaN NaN 0 1622300 80015 35 53514 54643 -0.01297465156517319 YQPEMEMEP 9 Unmodified _YQPEMEMEP_ 0 0 0 REV__ENST00000409301.5_1_7:32584308-32588465:+|nuORF REV__ENST00000409301.5_1_7:32584308-32588465:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.7344360351562 2 577.23065 1152.44675 -0.69931 -0.00040366 -1.3525 -0.00078071 -2.0518 -0.0011844 577.2328497554561 32.805 0.19407 32.805 32.714 32.908 0 18 9 3 0 0 0 0.18882 1 17145 17145 15.847 5.7733 1 8478600 + 80016 26686 53515 54644 93189 93189 -0.12337856259296132 YQPEYSKF 8 Unmodified _YQPEYSKF_ 0 0 0 nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 nc|ENSG00000082641|Q14494-2|NFE2L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.2584838867188 2 531.250557 1060.48656 0.24554 0.00013044 -0.25089 -0.00013328 -0.0053493 -2.8418E-06 531.2509857429775 65.178 0.453 64.694 64.382 64.835 -0.48428 31 20 2 0 0 0 0.79669 1 35464 35464 8.5933 1.304 1 7638400 80017 1350 53516 54645 93190 93190 -0.04126225202048772 YQPYNKDWI 9 Unmodified _YQPYNKDWI_ 0 0 0 ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH ENST00000216520.6_1_14:69847257-69864987:-|nuORF ENST00000216520.6_1_14:69847257-69864987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5312805175781 3 409.532868 1225.57677 -0.40038 -0.00016397 -2.4575 -0.0010064 -2.8579 -0.0011704 409.53181098057917 51.271 0.17973 51.217 51.107 51.286 -0.053871 14 8 2 0 0 0 0.43463 1 27758 27758 10.8 2.644 1 2229300 80018 1859 53517 54646 93191 93191 -0.02699175873635795 YQQCYYTAF 9 Unmodified _YQQCYYTAF_ 0 0 0 REV__nc|ENSG00000240671|A0A0C4DH67|IGKV1-8 REV__nc|ENSG00000240671|A0A0C4DH67|IGKV1-8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.1679992675781 3 396.167308 1185.4801 0.66674 0.00026414 0.75312 0.00029836 1.4199 0.0005625 396.16772340101414 56.805 0.24698 50.828 50.649 50.896 -5.9769 21 13 2 0 0 0 0.53666 1 36243 36243 2.9952 0 1 15384000 + 80019 29962 53518 54647 93192 93192 -0.10522486425088573 YQQLQETY 8 Unmodified _YQQLQETY_ 0 0 0 REV__nc|ENSG00000106123|O15197-2|EPHB6 REV__nc|ENSG00000106123|O15197-2|EPHB6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2352905273438 2 536.750921 1071.48729 0.6191 0.0003323 1.5108 0.00081092 2.1299 0.0011432 536.7517279060365 60.057 0.27555 60.057 59.902 60.178 0 20 12 2 0 0 0 8.7369 1 33449 33449 9.3474 0 1 2317400 + 80020 18492 53519 54648 93193 93193 -0.045594305529675694 YQQRLQALFF 10 Unmodified _YQQRLQALFF_ 0 0 0 nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 657.3535766601562 2 657.35368 1312.69281 -0.026784 -1.7607E-05 -0.50291 -0.00033059 -0.52969 -0.00034819 657.3534194796564 87.155 0.38148 87.155 86.953 87.335 0 71 22 4 0 0 0 0.66569 1 48310 48310 6.7232 0.09279 1 2793700 80021 5757 53520 54649 93194 93194 0.048967676970505636 YQQRLQALFF 10 Unmodified _YQQRLQALFF_ 0 0 0 nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 nc|ENSG00000146122|Q86T65-4|DAAM2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 657.35368 1312.69281 0.50809 0.00033399 -1.1039 -0.00072565 -0.59582 -0.00039166 657.8545389217203 87.692 0.20432 87.187 87.081 87.286 -0.50423 0.016082 -0.00048723 NaN 6.7232 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 492120 80022 5757 53520 54649 0.048967676970505636 YQQYAQQWNQ 10 Unmodified _YQQYAQQWNQ_ 0 0 0 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;ENSG00000105323|ENST00000392006|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-5|HNRNPUL1 nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.8705749511719 3 452.870431 1355.58946 NaN NaN NaN NaN NaN NaN NaN 77.256 1 76.773 76.273 77.273 -0.4826 0 0 0 1.0048 1 42292 42292 0.13989 0 1 80023 2302;16103 53521 54650 93195 93195 -0.0741076448136937 YQRAFQHL 8 Unmodified _YQRAFQHL_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 531.7771606445312 2 531.777608 1061.54066 -0.011297 -6.0077E-06 -1.0824 -0.00057558 -1.0937 -0.00058158 531.7770738352706 35.252 0.27235 35.279 35.143 35.415 0.027401 29 12 3 0 0 0 0.052857 1 18604 18604 146.01 101.6 1 10044000 80024 10766 53522 54651 93196 93196 0.012354117401628173 YQRAGKSL 8 Unmodified _YQRAGKSL_ 0 0 0 ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 461.7596435546875 2 461.758884 921.503215 NaN NaN NaN NaN NaN NaN NaN 27.987 1 27.941 27.441 28.441 -0.046408 0 0 0 0.80403 1 14437 14437 23.148 0 1 80025 7304 53523 54652 93197 93197 0.0393232047457559 YQRCFRINEM 10 Unmodified _YQRCFRINEM_ 0 0 0 REV__ENST00000483715.5_1_3:49712632-49712743:+|nuORF REV__ENST00000483715.5_1_3:49712632-49712743:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 453.8820190429688 3 453.881397 1358.62236 0.79526 0.00036095 -0.40791 -0.00018514 0.38735 0.00017581 453.8813838038975 58.91 0.22095 58.85 58.782 59.003 -0.060719 21 10 3 0 0 0 0.71123 1 32121 32121 0.69767 0.19171 1 2074100 + 80026 21857 53524 54653 93198 93198 -0.04260596954554785 YQRDPLKL 8 Unmodified _YQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.7979125976562 2 516.795466 1031.57638 0.2208 0.00011411 0.22961 0.00011866 0.45041 0.00023277 516.7955374920687 40.115 0.39917 39.818 39.629 40.028 -0.29716 47 18 3 0 0 0 0.19235 2 21142 21142;21248 72.968 16.791 1 42992000 80027 7545 53525 54654 93199;93200 93199 0.061854491971644165 YQRDPLKL 8 Unmodified _YQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.7955322265625 2 516.795466 1031.57638 0.43594 0.00022529 0.41345 0.00021367 0.84939 0.00043896 516.7955518815484 39.753 0.35073 39.758 39.564 39.915 0.0050545 31 16 2 0 0 0 0.078938 1 21197 21197 110.67 35.746 1 10201000 80028 7545 53525 54654 93201 93201 0.061854491971644165 YQRDPLKL 8 Unmodified _YQRDPLKL_ 0 0 0 ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF ENSG00000166888|ENST00000300134|STAT6 ENSG00000166888|ENST00000300134|STAT6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 516.7968139648438 2 516.795466 1031.57638 0.53216 0.00027502 1.0776 0.00055691 1.6098 0.00083193 516.79579700746 44.219 0.49077 39.367 39.186 39.677 -4.852 50 34 2 0 0 0 0.19886 2 26929 26929;27065 70.332 22.121 1 151610000 80029 7545 53525 54654 93202;93203 93202 0.061854491971644165 YQRFMRDNY 9 Unmodified _YQRFMRDNY_ 0 0 0 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 ENSG00000179163|ENST00000374479|FUCA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 431.5326232910156 3 431.532873 1291.57679 1.0143 0.0004377 -1.7743 -0.00076568 -0.76002 -0.00032797 431.5320059883372 19.133 0.25023 16.476 16.313 16.563 -2.6564 33 16 3 0 0 0 0.58865 1 10089 10089 1.0715 0 1 2675000 80030 8817 53526 54655 93204 93204 -0.05733499145253518 YQRFPELLH 9 Unmodified _YQRFPELLH_ 0 0 0 REV__ENSG00000090470|ENST00000204549|PDCD7 REV__ENSG00000090470|ENST00000204549|PDCD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 401.8832397460938 3 401.548741 1201.62439 0.025617 1.0286E-05 -0.87816 -0.00035262 -0.85255 -0.00034234 401.54841988992877 23.45 0.28344 23.462 23.33 23.614 0.012396 29 12 3 0 0 0 0.58466 1 12030 12030 1.1933 0 1 32127000 + 80031 17859 53527 54656 93205 93205 0.03164523117220597 YQRIEMPF 8 Unmodified _YQRIEMPF_ 0 0 0 REV__nc|ENSG00000115415|P42224-2|STAT1 REV__nc|ENSG00000115415|P42224-2|STAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.2677612304688 2 542.268227 1082.5219 -0.28826 -0.00015631 -1.2291 -0.00066648 -1.5173 -0.00082279 542.2673467280122 69.806 0.38573 69.327 69.109 69.495 -0.47903 48 16 4 0 0 0 0.78849 1 38229 38229 9.3474 0.75416 1 6181900 + 80032 18978 53528 54657 93206 93206 -0.01605885945900809 YQRILERL 8 Unmodified _YQRILERL_ 0 0 0 nc|ENSG00000198836|O60313-13|OPA1;nc|ENSG00000198836|O60313|OPA1;nc|ENSG00000198836|O60313-9|OPA1;nc|ENSG00000198836|O60313-11|OPA1;nc|ENSG00000198836|O60313-2|OPA1;ENSG00000198836|ENST00000361510|OPA1 nc|ENSG00000198836|O60313-13|OPA1 nc|ENSG00000198836|O60313-13|OPA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.821533203125 2 545.822015 1089.62948 -0.19921 -0.00010873 0.49772 0.00027167 0.29852 0.00016294 545.8215625902278 31.374 0.22607 31.404 31.296 31.522 0.030104 19 9 3 0 0 0 0.15437 1 16451 16451 85.642 16.537 1 3992200 80033 10167 53529 54658 93207 93207 0.08824826979844147 YQRRQRHRKTF 11 Unmodified _YQRRQRHRKTF_ 0 0 0 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 ENSG00000066422|ENST00000312938|ZBTB11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.2087097167969 4 394.723641 1574.86546 0.51547 0.00020347 -0.34563 -0.00013643 0.16984 6.7041E-05 394.9743030599513 17.017 0.1454 14.431 14.36 14.506 -2.5866 48 28 2 0 0 0 0.30604 1 8841 8841 0.094841 0 1 2833900 80034 937 53530 54659 93208 93208 0.10102151877003962 YQRWREERFRQ 11 Unmodified _YQRWREERFRQ_ 0 0 0 ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9 ENST00000507723.1_1_5:177021070-177022414:+|nuORF ENST00000507723.1_1_5:177021070-177022414:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 827.4212646484375 2 827.421479 1652.82841 NaN NaN NaN NaN NaN NaN NaN 102.33 1 102.28 101.78 102.78 -0.045853 0 0 0 0.9435 1 56841 56841 0 0 1 80035 9292 53531 54660 93209 93209 0.02810435540573053 YQRYHFIMAYH 11 Unmodified _YQRYHFIMAYH_ 0 0 0 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 ENSG00000092439|ENST00000646667|TRPM7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 764.861572265625 2 764.861346 1527.70814 -0.53052 -0.00040577 0.02583 1.9757E-05 -0.50469 -0.00038601 764.8616771298358 34.284 0.20166 34.093 33.972 34.174 -0.19131 15 7 3 0 0 0 0.74046 1 17908 17908 1.3295 0.9789 1 1211500 80036 1616 53532 54661 93210 93210 -0.0346068877736343 YQSDRSTFHS 10 Unmodified _YQSDRSTFHS_ 0 0 0 nc|ENSG00000142794|Q9H094-4|NBPF3;nc|ENSG00000142794|Q9H094-5|NBPF3;nc|ENSG00000142794|Q9H094-2|NBPF3;ENSG00000142794|ENST00000318249|NBPF3 nc|ENSG00000142794|Q9H094-4|NBPF3 nc|ENSG00000142794|Q9H094-4|NBPF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.2727661132812 2 614.273084 1226.53161 -0.22414 -0.00013768 -0.38706 -0.00023776 -0.6112 -0.00037544 614.273018437008 30.758 0.73208 30.758 30.16 30.892 0 91 35 5 0 0 0 0.16361 2 16033 15931;16033 38.176 15.439 1 30320000 80037 5447 53533 54662 93211;93212 93212 -0.07259026406791236 YQSLRSLEE 9 Unmodified _YQSLRSLEE_ 0 0 0 REV__ENSG00000072818|ENST00000158762|ACAP1 REV__ENSG00000072818|ENST00000158762|ACAP1 MSMS AL20221201_MKP_PDAC_01 4 562.7835693359375 2 562.782753 1123.55095 NaN NaN NaN NaN NaN NaN NaN 69.142 1 62.967 62.467 63.467 -6.1757 0 0 0 0.39043 1 45147 45147 20.454 1.0146 1 + 80038 17525 53534 54663 93213 93213 -0.005880701158957891 YQSTTPRTF 9 Unmodified _YQSTTPRTF_ 0 0 0 ENST00000592763.5_1_19:10787980-10789791:+|nuORF ENST00000592763.5_1_19:10787980-10789791:+|nuORF ENST00000592763.5_1_19:10787980-10789791:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.771728515625 2 550.772188 1099.52982 0.71568 0.00039418 -1.2149 -0.00066912 -0.49919 -0.00027494 550.7713373912035 41.164 0.77913 36.556 36.067 36.846 -4.6079 136 38 5 0 0 0 0.16226 1 24656 24656 26.884 2.8631 1 618650000 80039 15723 53535 54664 93214 93214 -0.015960354247681607 YQTDFDYQL 9 Unmodified _YQTDFDYQL_ 0 0 0 REV__ENSG00000085449|ENST00000233055|WDFY1 REV__ENSG00000085449|ENST00000233055|WDFY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.177978515625 3 398.17675 1191.50842 1.2886 0.0005131 2.9334 0.001168 4.222 0.0016811 398.17783522000286 100.34 0.098244 94.169 94.103 94.202 -6.1757 8 5 2 0 0 0 0.20428 1 67094 67094 16.566 4.3383 1 15132000 + 80040 17750 53536 54665 93215 93215 -0.07967465244155392 YQTHCLCNHL 10 Unmodified _YQTHCLCNHL_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.183837890625 3 411.183076 1230.5274 1.2399 0.00050983 0.02806 1.1538E-05 1.268 0.00052137 411.183109359353 42.669 0.49732 37.985 37.779 38.277 -4.6846 85 32 3 0 0 0 0.67033 2 25809 25679;25809 3.3196 1.4133 1 63403000 80041 16354 53537 54666 93216;93217 93217 -0.07864530425740668 YQTPRLWLF 9 Unmodified _YQTPRLWLF_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3336791992188 2 612.332216 1222.64988 0.46841 0.00028682 0.27775 0.00017007 0.74616 0.0004569 612.332369464346 88.88 0.26917 88.928 88.804 89.073 0.047852 23 10 3 0 0 0 0.0087923 1 49446 49446 103.42 67.292 1 38976000 80042 5652 53538 54667 93218 93218 0.0474599763963397 YQTPRLWLF 9 Unmodified _YQTPRLWLF_ 0 0 0 nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF nc|ENSG00000144848|Q9NT62-2|ATG3 nc|ENSG00000144848|Q9NT62-2|ATG3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.3324584960938 2 612.332216 1222.64988 0.92939 0.0005691 -0.4579 -0.00028039 0.47149 0.00028871 612.331853196308 99.339 0.17717 93.163 93.066 93.243 -6.1757 37 11 4 0 0 0 0.012228 1 66113 66113 74.2 53.746 1 362620000 80043 5652 53538 54667 93219 93219 0.0474599763963397 YQTSQLMTRK 10 Unmodified _YQTSQLMTRK_ 0 0 0 ENST00000544902.5_1_13:114287568-114288226:+|nuORF ENST00000544902.5_1_13:114287568-114288226:+|nuORF ENST00000544902.5_1_13:114287568-114288226:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 628.3277587890625 2 628.326805 1254.63906 1.8382 0.001155 0.20919 0.00013144 2.0474 0.0012864 628.3269096787907 81.649 0.42354 81.709 81.507 81.93 0.059929 39 16 3 0 0 0 0.033218 2 45133 45133;45235 66.457 7.7779 1 9429300 80044 15084 53539 54668 93220;93221 93220 0.021922272030451495 YQTSQLMTRK 10 Unmodified _YQTSQLMTRK_ 0 0 0 ENST00000544902.5_1_13:114287568-114288226:+|nuORF ENST00000544902.5_1_13:114287568-114288226:+|nuORF ENST00000544902.5_1_13:114287568-114288226:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 628.3292236328125 2 628.326805 1254.63906 1.0468 0.00065773 1.4827 0.0009316 2.5295 0.0015893 628.3276298702635 97.791 0.20352 91.616 91.577 91.781 -6.1757 22 13 2 0 0 0 0.087043 1 64863 64863 49.554 7.7147 1 16611000 80045 15084 53539 54668 93222 93222 0.021922272030451495 YQTVMFNRPF 10 Unmodified _YQTVMFNRPF_ 0 0 0 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 nc|ENSG00000258597|P20848|SERPINA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8818054199219 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 17.228 1 17.233 16.733 17.733 0.0050564 0 0 0 0.99091 1 8681 8681 0.69767 0 1 80046 16591 53540 54669 93223 93223 -0.01606853963062349 YQTWRRQR 8 Unmodified _YQTWRRQR_ 0 0 0 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;ENSG00000160796|ENST00000450053|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.3175048828125 2 597.317963 1192.62137 NaN NaN NaN NaN NaN NaN NaN 20.065 1 20.065 19.565 20.565 0 0 0 0 0.97444 1 10078 10078 2.5775 0 1 80047 6755 53541 54670 93224 93224 0.03276692783060753 YQTYGHFP 8 Unmodified _YQTYGHFP_ 0 0 0 nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2 nc|ENSG00000116833|O00482-4|NR5A2 nc|ENSG00000116833|O00482-4|NR5A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 506.7298583984375 2 506.729792 1011.44503 0.023209 1.1761E-05 0.043778 2.2184E-05 0.066988 3.3945E-05 506.72958021061385 71.284 0.27753 71.284 71.164 71.442 0 22 14 2 0 0 0 0.80975 1 39792 39792 0.79363 0 1 1282400 80048 3260 53542 54671 93225 93225 -0.06023361170707631 YQVEDNLQQF 10 Unmodified _YQVEDNLQQF_ 0 0 0 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 642.2974853515625 2 642.298767 1282.58298 0.38202 0.00024537 -1.6251 -0.0010438 -1.2431 -0.00079844 642.2975668807297 59.734 0.279 59.681 59.518 59.797 -0.053062 22 13 2 0 0 0 0.48505 1 32609 32609 17.113 4.8722 1 2679100 + 80049 21770 53543 54672 93226 93226 -0.04700702432774051 YQVEDNLQQF 10 Unmodified _YQVEDNLQQF_ 0 0 0 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 REV__nc|ENSG00000163492|Q6ZP82-1|CCDC141 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8557739257812 2 642.298767 1282.58298 0.38202 0.00024537 -1.6251 -0.0010438 -1.2431 -0.00079844 642.2975668807297 59.734 0.279 59.681 59.518 59.797 -0.053062 22 13 2 0 0 0 0.22327 1 32516 32516 19.257 4.4187 1 2679100 + 80050 21770 53543 54672 93227 93227 -0.04700702432774051 YQVGQLYSV 9 Unmodified _YQVGQLYSV_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7728271484375 2 528.771657 1055.52876 0.50048 0.00026464 -0.83536 -0.00044172 -0.33489 -0.00017708 528.7715310973837 58.314 0.23555 58.314 58.154 58.39 0 13 8 2 0 0 0 0.32871 1 32468 32468 15.847 4.2069 1 1202900 80051 8405 53544 54673 93228 93228 0.00321750206330762 YQVGQLYSV 9 Unmodified _YQVGQLYSV_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 528.7745971679688 2 528.771657 1055.52876 0.20683 0.00010937 2.143 0.0011332 2.3498 0.0012425 528.7727390085018 58.892 0.26419 58.401 58.271 58.535 -0.49079 21 12 2 0 0 0 0.03568 1 32028 32028 52.268 30.522 1 2681200 80052 8405 53544 54673 93229 93229 0.00321750206330762 YQVGQLYSV 9 Unmodified _YQVGQLYSV_ 0 0 0 ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB ENSG00000174238|ENST00000313486|PITPNA ENSG00000174238|ENST00000313486|PITPNA MULTI-MSMS AL20221201_MKP_PDAC_01 4 528.7730712890625 2 528.771657 1055.52876 0.84684 0.00044779 1.0159 0.00053719 1.8628 0.00098497 528.772373872621 66.106 0.3438 59.931 59.773 60.117 -6.1757 29 19 2 0 0 0 0.07916 1 43015 43015 37.974 17.52 1 21725000 80053 8405 53544 54673 93230 93230 0.00321750206330762 YQVGTENTLL 10 Unmodified _YQVGTENTLL_ 0 0 0 ENST00000556631.1_1_14:56139883-56140117:+|nuORF ENST00000556631.1_1_14:56139883-56140117:+|nuORF ENST00000556631.1_1_14:56139883-56140117:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 379.8650207519531 3 379.864394 1136.57135 1.6671 0.00063327 0.087731 3.3326E-05 1.7548 0.00066659 379.8644266134481 21.371 0.50902 18.636 18.391 18.9 -2.7348 156 41 5 0 0 0 0.67413 1 11482 11482 5.7834 0.48655 1 273760000 80054 15244 53545 54674 93231 93231 0.008531005438953798 YQVHDHLTI 9 Unmodified _YQVHDHLTI_ 0 0 0 ENST00000455270.5_1_3:186838863-186838917:-|nuORF ENST00000455270.5_1_3:186838863-186838917:-|nuORF ENST00000455270.5_1_3:186838863-186838917:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2886352539062 2 563.288005 1124.56146 0.44173 0.00024882 1.3144 0.00074036 1.7561 0.00098919 563.2894687510957 58.564 0.25197 58.074 57.921 58.173 -0.49079 33 11 3 0 0 0 0.044296 1 31854 31854 43.858 0 1 5354100 80055 13579 53546 54675 93232 93232 0.004159573291644847 YQVHYEWWRKI 11 Unmodified _YQVHYEWWRKI_ 0 0 0 nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 nc|ENSG00000154864|Q9H5I5|PIEZO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 804.4127197265625 2 804.409518 1606.80448 NaN NaN NaN NaN NaN NaN NaN 93.415 1 93.438 92.938 93.938 0.022987 0 0 0 0.94184 1 51937 51937 1.1933 0.88631 1 80056 6354 53547 54676 93233 93233 0.025352020541959064 YQVNGVNPAY 10 Unmodified _YQVNGVNPAY_ 0 0 0 nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1;nc|ENSG00000134954|P14921-5|ETS1 nc|ENSG00000134954|P14921-2|ETS1 nc|ENSG00000134954|P14921-2|ETS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.7711181640625 2 562.772188 1123.52982 NaN NaN NaN NaN NaN NaN NaN 54.156 1 54.156 53.656 54.656 0 0 0 0 0.83398 1 30052 30052 10.824 0.64053 1 80057 4656 53548 54677 93234 93234 -0.027000354247547875 YQVWLPRMV 9 Unmodified _YQVWLPRMV_ 0 0 0 REV__ENSG00000089597|ENST00000356638|GANAB REV__ENSG00000089597|ENST00000356638|GANAB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 596.3204345703125 2 596.320794 1190.62703 NaN NaN NaN NaN NaN NaN NaN 28.042 1 28.071 27.571 28.571 0.029564 0 0 0 0.85359 1 14588 14588 0.52476 0.12405 1 + 80058 17843 53549 54678 93235 93235 0.03934655250509422 YQWIIPYL 8 Unmodified _YQWIIPYL_ 0 0 0 REV__ENSG00000171988|ENST00000399262|JMJD1C REV__ENSG00000171988|ENST00000399262|JMJD1C MSMS AL20221201_MKP_PDAC_01 4 548.2959594726562 2 548.29731 1094.58007 NaN NaN NaN NaN NaN NaN NaN 12.855 1 10.373 9.8731 10.873 -2.482 0 0 0 0.97444 1 6508 6508 0 0 1 + 80059 22618 53550 54679 93236 93236 0.03656118971025535 YQWLQNSL 8 Unmodified _YQWLQNSL_ 0 0 0 ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 ENSG00000133401|ENST00000438447|PDZD2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 351.1790771484375 3 351.178425 1050.51345 NaN NaN NaN NaN NaN NaN NaN 79.727 1 79.727 79.227 80.227 0 0 0 0 0.97444 1 44279 44279 1.4819 0 1 80060 4513 53551 54680 93237 93237 -0.0097911659086094 YQYDLRML 8 Unmodified _YQYDLRML_ 0 0 0 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.2742919921875 2 551.273509 1100.53247 0.098422 5.4257E-05 0.26349 0.00014526 0.36191 0.00019951 551.2736384869562 69.32 0.29817 68.84 68.675 68.973 -0.48071 28 12 3 0 0 0 0.79783 1 37870 37870 7.9102 0.62092 1 2430900 80061 5149 53552 54681 93238 93238 -0.013779032914726486 YQYDLRML 8 Unmodified _YQYDLRML_ 0 0 0 nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 nc|ENSG00000139350|Q8NHV4-2|NEDD1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.273509 1100.53247 0.65963 0.00036364 0.888 0.00048953 1.5476 0.00085317 551.2739351587419 68.805 0.17612 68.83 68.748 68.924 0.025146 -0.0047828 0.00056224 NaN 7.9102 11 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1388800 80062 5149 53552 54681 -0.013779032914726486 YQYPPGYSHHN 11 Unmodified _YQYPPGYSHHN_ 0 0 0 nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;ENSG00000113360|ENST00000344624|DROSHA;DROSHA|p.G1172Dfs*3|1|0.08|ENSG00000113360|chr5:31421282-31421282|C/-|frameshift_variant;nc|ENSG00000113360|Q9NRR4-3|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA nc|ENSG00000113360|Q9NRR4-2|DROSHA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 454.8671569824219 3 454.866909 1361.5789 NaN NaN NaN NaN NaN NaN NaN 87.125 1 87.125 86.625 87.625 0 0 0 0 0.94307 1 48250 48250 0.08335 0 1 80063 2960 53553 54682 93239 93239 -0.08742747135784157 YQYPVIIHL 9 Unmodified _YQYPVIIHL_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.3223266601562 2 573.321317 1144.62808 0.29821 0.00017097 0.41781 0.00023954 0.71602 0.00041051 573.3211592942135 76.412 0.28065 75.932 75.71 75.99 -0.47945 23 11 3 0 0 0 0.19127 1 41787 41787 26.341 18.431 1 1935600 80064 934 53554 54683 93240 93240 0.061551928911057985 YQYPVIIHL 9 Unmodified _YQYPVIIHL_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.8219604492188 2 573.321317 1144.62808 0.20943 0.00012007 0.48338 0.00027713 0.69281 0.0003972 573.3211763443376 75.813 0.30675 75.861 75.707 76.014 0.047943 28 13 3 0 0 0 0.08691 1 41835 41835 49.669 23.328 1 4451000 80065 934 53554 54683 93241 93241 0.061551928911057985 YQYPVIIHL 9 Unmodified _YQYPVIIHL_ 0 0 0 ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1 ENST00000470968.6_1_1:43829589-43833598:-|nuORF ENST00000470968.6_1_1:43829589-43833598:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 573.2818603515625 2 573.321317 1144.62808 1.2443 0.00071338 0.55667 0.00031915 1.801 0.0010325 573.3215113339791 89.034 0.39034 82.858 82.685 83.076 -6.1757 35 21 2 0 0 0 0.12572 1 58885 58885 32.117 17.535 1 12173000 80066 934 53554 54683 93242 93242 0.061551928911057985 YQYTNWSVE 9 Unmodified _YQYTNWSVE_ 0 0 0 nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC;nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC nc|ENSG00000081237|P08575-8|PTPRC nc|ENSG00000081237|P08575-8|PTPRC MULTI-MSMS AL20221201_MKP_PDAC_01 4 595.262451171875 2 595.261653 1188.50875 0.7725 0.00045984 0.12665 7.5391E-05 0.89915 0.00053523 595.2617542270019 61.656 0.40652 55.48 55.248 55.654 -6.1757 37 20 3 0 0 0 0.28023 1 39659 39659 18.146 1.2041 1 31827000 80067 1321 53555 54684 93243 93243 -0.07796045524264628 YQYTTTKETF 10 Unmodified _YQYTTTKETF_ 0 0 0 REV__ENSG00000129292|ENST00000395386|PHF20L1 REV__ENSG00000129292|ENST00000395386|PHF20L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.8059692382812 2 641.303518 1280.59248 -0.013305 -8.5326E-06 0.17546 0.00011252 0.16215 0.00010399 641.8052409906635 87.74 0.239 87.74 87.616 87.855 0 16 10 2 0 0 0 0.71123 1 48550 48550 1.6526 0 1 451600 + 80068 19659 53556 54685 93244 93244 -0.03658934147256332 YQYTTTKETF 10 Unmodified _YQYTTTKETF_ 0 0 0 REV__ENSG00000129292|ENST00000395386|PHF20L1 REV__ENSG00000129292|ENST00000395386|PHF20L1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 641.3038940429688 2 641.303518 1280.59248 0.24696 0.00015837 -0.046506 -2.9825E-05 0.20045 0.00012855 641.303506488311 88.306 0.33137 87.801 87.624 87.956 -0.50423 29 14 3 0 0 0 0.69064 2 48256 48256;48363 3.9444 0 1 1049200 + 80069 19659 53556 54685 93245;93246 93245 -0.03658934147256332 YQYVCWASYPY 11 Unmodified _YQYVCWASYPY_ 0 0 0 REV__ENSG00000133863|ENST00000643185|TEX15 REV__ENSG00000133863|ENST00000643185|TEX15 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 721.8073120117188 2 721.807913 1441.60127 NaN NaN NaN NaN NaN NaN NaN 83.75 1 83.75 83.25 84.25 0 0 0 0 0.94307 1 46443 46443 0.30703 0 1 + 80070 19938 53557 54686 93247 93247 -0.10186283782400096 YQYWKLKRKVN 11 Unmodified _YQYWKLKRKVN_ 0 0 0 ENSG00000077684|ENST00000226319|JADE1;nc|ENSG00000077684|Q6IE81-2|JADE1;nc|ENSG00000077684|Q6IE81-3|JADE1 ENSG00000077684|ENST00000226319|JADE1 ENSG00000077684|ENST00000226319|JADE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 763.4349975585938 2 763.435535 1524.85652 NaN NaN NaN NaN NaN NaN NaN 97.678 1 97.435 96.935 97.935 -0.24277 0 0 0 0.9435 1 53340 53340 0 0 1 80071 1224 53558 54687 93248 93248 0.11508365467943804 YQYYSTHPH 9 Unmodified _YQYYSTHPH_ 0 0 0 REV__nc|ENSG00000185339|P20062-2|TCN2 REV__nc|ENSG00000185339|P20062-2|TCN2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.202392578125 2 598.261988 1194.50942 0.58084 0.0003475 3.2439 0.0019407 3.8247 0.0022882 598.263945157569 42.591 0.33814 42.591 42.362 42.7 0 24 16 2 0 0 0 0.20528 1 22980 22980 8.5933 1.304 1 2272500 + 80072 23495 53559 54688 93249 93249 -0.080052060845901 YRAEYINFL 9 Unmodified _YRAEYINFL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7741088867188 2 594.806031 1187.59751 0.23854 0.00014188 -0.4148 -0.00024673 -0.17627 -0.00010484 594.8058373530837 70.366 0.26096 69.887 69.693 69.954 -0.47903 19 11 3 0 0 0 0.19994 1 38519 38519 8.1555 6.6736 1 1535900 80073 8967 53560 54689 93250 93250 0.011214145060421288 YRAEYINFL 9 Unmodified _YRAEYINFL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MSMS AL20221201_MKP_PDAC_01 4 594.8057250976562 2 594.806031 1187.59751 NaN NaN NaN NaN NaN NaN NaN 86.711 1 80.536 80.036 81.036 -6.1757 0 0 0 0.46232 1 57165 57165 17.113 0 1 80074 8967 53560 54689 93251 93251 0.011214145060421288 YRAEYINFL 9 Unmodified _YRAEYINFL_ 0 0 0 ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000503190.1_1_4:169317058-169322080:-|nuORF ENSG00000181381|ENST00000682922|DDX60L ENSG00000181381|ENST00000682922|DDX60L MULTI-SECPEP AL20221201_MKP_PDAC_01 4 595.254638671875 2 594.806031 1187.59751 0.85082 0.00050607 -0.55854 -0.00033222 0.29228 0.00017385 595.3072078569076 86.819 0.13188 80.643 80.567 80.699 -6.1757 8 6 2 0 0 0 0.18428 1 57236 57236 14.405 5.0223 1 5307300 80075 8967 53560 54689 93252 93252 0.011214145060421288 YRAFETQMTR 10 Unmodified _YRAFETQMTR_ 0 0 0 ENSG00000130881|ENST00000253193|LRP3;ENST00000590278.1_1_19:33696051-33698478:+|nuORF ENSG00000130881|ENST00000253193|LRP3 ENSG00000130881|ENST00000253193|LRP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 434.8831481933594 3 434.880162 1301.61866 NaN NaN NaN NaN NaN NaN NaN 48.971 1 48.927 48.427 49.427 -0.04369 0 0 0 0.97592 1 26446 26446 1.5923 0.48253 1 80076 4274 53561 54690 93253 93253 -0.020089434567807984 YRAGSISGF 9 Unmodified _YRAGSISGF_ 0 0 0 REV__ENSG00000186442|ENST00000417996|KRT3 REV__ENSG00000186442|ENST00000417996|KRT3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 478.7984313964844 2 479.243067 956.47158 1.0137 0.00048579 -1.2866 -0.00061661 -0.27297 -0.00013082 479.2425665165775 35.032 0.54048 30.937 30.668 31.208 -4.0951 39 31 2 0 0 0 0.10661 1 20224 20224 37.974 13.3 1 9294800 + + 80077 16847 53562 54691 93254 93254 -0.008396722793804656 YRAIYFSH 8 Unmodified _YRAIYFSH_ 0 0 0 DCT|p.D208Y|1|0.16|ENSG00000080166|chr13:94466632-94466632|C/A|missense_variant DCT|p.D208Y|1|0.16|ENSG00000080166|chr13:94466632-94466632|C/A|missense_variant DCT|p.D208Y|1|0.16|ENSG00000080166|chr13:94466632-94466632|C/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 353.1807861328125 3 352.846898 1055.51886 -0.026563 -9.3726E-06 -0.30511 -0.00010766 -0.33167 -0.00011703 352.8468019367795 18.791 0.26045 18.797 18.728 18.988 0.0060482 22 13 2 0 0 0 0.80143 1 9531 9531 3.9444 0 1 2778900 80078 228 53563 54692 93255 93255 -0.006673930083934465 YRAPSYLKNE 10 Unmodified _YRAPSYLKNE_ 0 0 0 REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7 REV__nc|ENSG00000121690|Q96QD5-2|DEPDC7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.5502624511719 3 414.215539 1239.62479 -0.073133 -3.0293E-05 0.77727 0.00032196 0.70413 0.00029166 414.5495125218133 18.19 0.1603 18.196 18.095 18.255 0.0060463 19 16 2 0 0 0 0.65471 1 9191 9191 7.9454 3.0484 1 3893800 + 80079 29608 53564 54693 93256 93256 0.014558980464244087 YRAQPSVSL 9 Unmodified _YRAQPSVSL_ 0 0 0 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 ENSG00000239306|ENST00000310137|RBM14 MSMS AL20221201_MKP_PDAC_01 4 510.778076171875 2 510.777274 1019.53999 NaN NaN NaN NaN NaN NaN NaN 41.726 1 37.118 36.618 37.618 -4.6079 0 0 0 0.083082 1 25099 25099 47.749 7.799 1 80080 10662 53565 54694 93257 93257 0.031005723004682295 YRARGHGLRGG 11 Unmodified _YRARGHGLRGG_ 0 0 0 REV__ENSG00000154822|ENST00000615277|PLCL2 REV__ENSG00000154822|ENST00000615277|PLCL2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8890380859375 3 400.555 1198.64317 -0.52889 -0.00021185 -0.071096 -2.8478E-05 -0.59999 -0.00024033 400.555036883243 16.21 0.12333 16.211 16.138 16.261 0.0010548 76 49 2 0 0 0 0.30605 1 7957 7957 0 0 1 638560 + 80081 21249 53566 54695 93258 93258 0.051794975316170166 YRASGEQL 8 Unmodified _YRASGEQL_ 0 0 0 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 nc|ENSG00000106328|Q9NQT6-2|FSCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 462.2328796386719 2 462.232699 922.450845 0.1756 8.117E-05 0.89132 0.000412 1.0669 0.00049317 462.2331395541036 24.005 0.4243 24.005 23.714 24.138 0 30 20 2 0 0 0 0.77186 1 12256 12256 10.824 0 1 841730 80082 16106 53567 54696 93259 93259 -0.013482626590416658 YRATTLPLY 9 Unmodified _YRATTLPLY_ 0 0 0 REV__nc|ENSG00000143554|Q5K4L6-2|SLC27A3 REV__nc|ENSG00000143554|Q5K4L6-2|SLC27A3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 366.5371398925781 3 366.537842 1096.5917 -0.001186 -4.347E-07 -1.9681 -0.00072138 -1.9693 -0.00072181 366.53686344569667 17.232 0.16361 17.237 17.16 17.323 0.0050564 16 12 2 0 0 0 0.55144 1 8703 8703 2.4985 0 1 703260 + 80083 20654 53568 54697 93260 93260 0.04726315994366814 YRAVTYHNWRH 11 Unmodified _YRAVTYHNWRH_ 0 0 0 ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C ENSG00000095464|ENST00000371447|PDE6C MULTI-MSMS AL20221201_MKP_PDAC_01 4 751.8733520507812 2 751.873634 1501.73271 0.8446 0.00063503 -1.0631 -0.0007993 -0.21847 -0.00016426 752.3741065465082 73.007 1.2134 66.831 66.276 67.489 -6.1757 163 60 3 0 0 0 0.5229 1 47591 47591 15.248 3.0078 1 55206000 80084 1654 53569 54698 93261 93261 0.0019170742034475552 YRAVVYSNTI 10 Unmodified _YRAVVYSNTI_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8807678222656 3 395.880267 1184.61897 1.1687 0.00046267 -1.9134 -0.00075747 -0.74466 -0.0002948 395.87938783435914 36.919 0.35972 32.635 32.422 32.782 -4.2835 43 21 3 0 0 0 0.57893 1 21561 21561 10.899 0 1 9916100 80085 16131 53570 54699 93262 93262 0.034047995347464166 YRCAQGTLPSL 11 Unmodified _YRCAQGTLPSL_ 0 0 0 REV__ENSG00000023516|ENST00000025301|AKAP11 REV__ENSG00000023516|ENST00000025301|AKAP11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 403.54150390625 3 403.541257 1207.60194 0.99229 0.00040043 0.018242 7.3615E-06 1.0105 0.00040779 403.541318740474 30.302 0.37987 26.805 26.612 26.992 -3.497 54 18 4 0 0 0 0.56638 1 17148 17148 10.315 0 1 104920000 + 80086 17120 53571 54700 93263 93263 0.006445556572998612 YRCDTCGQTF 10 Unmodified _YRCDTCGQTF_ 0 0 0 ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF ENSG00000125812|ENST00000338121|GZF1 ENSG00000125812|ENST00000338121|GZF1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1592102050781 3 398.495319 1192.46413 NaN NaN NaN NaN NaN NaN NaN 29.396 1 29.396 28.896 29.896 0 0 0 0 0.99091 1 15223 15223 0.69767 0 1 80087 3884 53572 54701 93264 93264 -0.12440515933644747 YRCKECGKAF 10 Unmodified _YRCKECGKAF_ 0 0 0 nc|ENSG00000160321|O43345-2|ZNF208;ENSG00000160321|ENST00000397126|ZNF208 nc|ENSG00000160321|O43345-2|ZNF208 nc|ENSG00000160321|O43345-2|ZNF208 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.28173828125 2 602.783718 1203.55288 -0.16316 -9.8349E-05 1.4889 0.00089748 1.3257 0.00079913 602.7847783107499 72.099 0.81109 72.099 71.523 72.334 0 51 30 3 0 0 0 0.70951 1 39884 39884 1.8442 0 1 2023000 80088 6718 53573 54702 93265 93265 -0.040750559033085665 YRCKVCPLTF 10 Unmodified _YRCKVCPLTF_ 0 0 0 ENSG00000160094|ENST00000539719|ZNF362 ENSG00000160094|ENST00000539719|ZNF362 ENSG00000160094|ENST00000539719|ZNF362 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 410.5435180664062 3 410.543833 1228.60967 -0.36762 -0.00015093 0.49035 0.00020131 0.12273 5.0386E-05 410.5438528542784 31.752 0.18015 31.752 31.64 31.82 0 21 8 3 0 0 0 0.69626 1 16556 16556 3.3196 2.3061 1 1239000 80089 6685 53574 54703 93266 93266 0.004509916532015268 YRCLRGGRA 9 Unmodified _YRCLRGGRA_ 0 0 0 ENSG00000179930|ENST00000339948|ZNF648 ENSG00000179930|ENST00000339948|ZNF648 ENSG00000179930|ENST00000339948|ZNF648 MSMS AL20221201_MKP_PDAC_01 4 351.1908264160156 3 351.190782 1050.55052 NaN NaN NaN NaN NaN NaN NaN 7.9456 1 5.4636 4.9636 5.9636 -2.482 0 0 0 0.8622 1 4011 4011 0 0 1 80090 8868 53575 54704 93267 93267 0.027262764739361955 YRCMMLYAF 9 Unmodified _YRCMMLYAF_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 399.8459167480469 3 399.846636 1196.51808 0.42395 0.00016952 -2.0018 -0.00080043 -1.5779 -0.00063091 399.8459070011242 46.474 0.25602 46.474 46.351 46.607 0 19 11 2 0 0 0 0.48152 1 25397 25397 5.2969 2.5617 1 3273800 + 80091 27266 53576 54705 93268 93268 -0.07232015035629047 YRCMMLYAF 9 Unmodified _YRCMMLYAF_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 399.846636 1196.51808 0.42395 0.00016952 -2.0018 -0.00080043 -1.5779 -0.00063091 399.8459070011242 46.474 0.25602 46.474 46.351 46.607 0 0.054197 8.0901E-06 NaN 5.2969 19 11 2 NaN NaN NaN NaN 0 NaN NaN 0 3273800 + 80092 27266 53576 54705 -0.07232015035629047 YRCMMLYAF 9 Unmodified _YRCMMLYAF_ 0 0 0 REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 399.846636 1196.51808 0.62799 0.0002511 -2.037 -0.00081451 -1.4091 -0.00056341 399.8459457493737 46.702 0.1536 46.366 46.27 46.424 -0.33664 -0.054197 -3.4149E-05 NaN 5.2969 14 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1594200 + 80093 27266 53576 54705 -0.07232015035629047 YRCNGKMMF 9 Unmodified _YRCNGKMMF_ 0 0 0 REV__ENSG00000204569|ENST00000376511|PPP1R10 REV__ENSG00000204569|ENST00000376511|PPP1R10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 383.8383178710938 3 383.838252 1148.49293 NaN NaN NaN NaN NaN NaN NaN 1.35 1 1.3294 0.82936 1.8294 -0.020623 0 0 0 0.8622 1 701 701 0 0 1 + 80094 24183 53577 54706 93269 93269 -0.07538069838165029 YRCQEEGLGHF 11 Unmodified _YRCQEEGLGHF_ 0 0 0 nc|ENSG00000099954|Q9BXF3|CECR2;ENSG00000099954|ENST00000262608|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 nc|ENSG00000099954|Q9BXF3|CECR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.8675842285156 3 446.868033 1337.58227 -0.37769 -0.00016878 -0.86016 -0.00038438 -1.2379 -0.00055316 446.86775236371415 27.359 0.37756 27.359 27.174 27.552 0 69 18 5 0 0 0 0.65108 2 14067 14067;14171 4.4062 2.1534 1 88953000 80095 1726 53578 54707 93270;93271 93270 -0.07301820353472976 YRCRECGKAF 10 Unmodified _YRCRECGKAF_ 0 0 0 nc|ENSG00000081665|Q5JVG8-2|ZNF506;ENSG00000081665|ENST00000540806|ZNF506;nc|ENSG00000256771|O75346-2|ZNF253;ENSG00000256771|ENST00000589717|ZNF253;ENSG00000177932|ENST00000315475|ZNF354C nc|ENSG00000081665|Q5JVG8-2|ZNF506 nc|ENSG00000081665|Q5JVG8-2|ZNF506 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.5265197753906 3 411.526954 1231.55903 -0.79379 -0.00032666 -0.73128 -0.00030094 -1.5251 -0.00062761 411.5266969898555 28.432 0.22849 28.432 28.292 28.52 0 18 13 2 0 0 0 0.6606 1 14662 14662 3.8763 0 1 3470500 80096 1326 53579 54708 93272 93272 -0.04748537671798658 YRDFEEQLVF 10 Unmodified _YRDFEEQLVF_ 0 0 0 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 673.3250732421875 2 673.324785 1344.63502 0.39418 0.00026541 0.48779 0.00032844 0.88197 0.00059385 673.3250775111424 63.109 0.29159 62.623 62.501 62.793 -0.48617 34 13 3 0 0 0 0.62068 1 34382 34382 10.074 1.9184 1 6798200 + 80097 17554 53580 54709 93273 93273 -0.02351539019014126 YRDFEEQLVF 10 Unmodified _YRDFEEQLVF_ 0 0 0 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 673.3252563476562 2 673.324785 1344.63502 0.55538 0.00037395 -0.43917 -0.00029571 0.1162 7.8242E-05 673.3243292959083 62.691 0.30539 62.669 62.506 62.811 -0.021614 40 15 3 0 0 0 0.46514 1 34249 34249 18.146 1.0335 1 17355000 + 80098 17554 53580 54709 93274 93274 -0.02351539019014126 YRDFEEQLVF 10 Unmodified _YRDFEEQLVF_ 0 0 0 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 REV__nc|ENSG00000074603|Q6V1X1-6|DPP8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 673.324785 1344.63502 0.55538 0.00037395 -0.43917 -0.00029571 0.1162 7.8242E-05 673.3243292959083 62.691 0.30539 62.669 62.506 62.811 -0.021614 0.023328 -0.00061951 NaN 18.146 40 15 3 NaN NaN NaN NaN 0 NaN NaN 0 17355000 + 80099 17554 53580 54709 -0.02351539019014126 YRDHYYRCRDW 11 Unmodified _YRDHYYRCRDW_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 816.8602294921875 2 816.859866 1631.70518 NaN NaN NaN NaN NaN NaN NaN 86.815 1 86.312 85.812 86.812 -0.50318 0 0 0 0.9435 1 47497 47497 0 0 1 + 80100 18501 53581 54710 93275 93275 -0.08540563902192844 YRDICKNMVL 10 Unmodified _YRDICKNMVL_ 0 0 0 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.8809814453125 3 418.882626 1253.62605 -0.48755 -0.00020423 -0.53788 -0.00022531 -1.0254 -0.00042954 418.8823579412645 20.677 0.24894 20.677 20.55 20.799 0 46 16 4 0 0 0 0.70951 1 10381 10381 0.77653 0 1 8284300 80101 6260 53582 54711 93276 93276 0.009380728193036703 YRDIMFVKNC 10 Unmodified _YRDIMFVKNC_ 0 0 0 REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF REV__ENST00000564004.5_1_16:89799827-89804651:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 430.2111511230469 3 430.210743 1287.6104 NaN NaN NaN NaN NaN NaN NaN 26.121 1 26.089 25.589 26.589 -0.031708 0 0 0 0.8671 1 13421 13421 5.4027 0 1 + 80102 21443 53583 54712 93277 93277 -0.021902136977132614 YRDLALHF 8 Unmodified _YRDLALHF_ 0 0 0 ENSG00000135837|ENST00000367607|CEP350;CEP350|p.Q894Cfs*18|1|0.1|ENSG00000135837|chr1:180020453-180020459|TCAGAAG/-|frameshift_variant ENSG00000135837|ENST00000367607|CEP350 ENSG00000135837|ENST00000367607|CEP350 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.7739868164062 2 517.774534 1033.53451 NaN NaN NaN NaN NaN NaN NaN 100.26 1 100.26 99.762 100.76 0 0 0 0 0.97444 1 55336 55336 0.79363 0 1 80103 4746 53584 54713 93278 93278 0.019088935086301717 YRDLGIASL 9 Unmodified _YRDLGIASL_ 0 0 0 REV__ENSG00000214943|ENST00000399285|GPR33 REV__ENSG00000214943|ENST00000399285|GPR33 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 504.2795104980469 2 504.279649 1006.54475 0.0026311 1.3268E-06 -0.18204 -9.1797E-05 -0.17941 -9.047E-05 504.2794467901712 48.326 0.74117 47.954 47.556 48.297 -0.37172 128 37 5 0 0 0 0.078314 1 25967 25967 38.176 0 1 675220000 + 80104 24329 53585 54714 93279 93279 0.04173456443209034 YRDLRWRFWWE 11 Unmodified _YRDLRWRFWWE_ 0 0 0 REV__ENSG00000127995|ENST00000297273|CASD1 REV__ENSG00000127995|ENST00000297273|CASD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 856.9293823242188 2 856.925866 1711.83718 NaN NaN NaN NaN NaN NaN NaN 72.188 1 72.188 71.688 72.688 0 0 0 0 0.9435 1 40198 40198 0 0 1 + 80105 19597 53586 54715 93280 93280 0.009734091770724262 YRDLSVFAHL 10 Unmodified _YRDLSVFAHL_ 0 0 0 REV__ENST00000496038.1_1_1:156627297-156628923:+|nuORF REV__ENST00000496038.1_1_1:156627297-156628923:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5522766113281 3 407.552262 1219.63496 0.28094 0.0001145 -0.060351 -2.4596E-05 0.22059 8.9903E-05 407.5522239216378 58.253 0.2035 57.762 57.658 57.861 -0.49079 17 9 2 0 0 0 0.67413 1 31674 31674 5.7834 0.05158 1 1885900 + 80106 27960 53587 54716 93281 93281 0.033925057716714946 YRDRDRSR 8 Unmodified _YRDRDRSR_ 0 0 0 REV__ENST00000553902.5_1_14:23375339-23380574:-|nuORF REV__ENST00000553902.5_1_14:23375339-23380574:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.1943664550781 3 375.19536 1122.56425 0.048236 1.8098E-05 -3.5567 -0.0013345 -3.5085 -0.0013164 375.1942717045513 18.147 0.10308 18.153 18.068 18.171 0.0060482 9 5 2 0 0 0 0.80232 1 9164 9164 3.5965 1.098 1 1146900 + 80107 18070 53588 54717 93282 93282 0.007872255067013612 YRDRFMIH 8 Unmodified _YRDRFMIH_ 0 0 0 REV__nc|ENSG00000148429|Q92738-2|USP6NL REV__nc|ENSG00000148429|Q92738-2|USP6NL MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.753662109375 2 569.284743 1136.55493 0.60294 0.00034325 4.0235 0.0022905 4.6265 0.0026338 569.2868369013512 36.9 0.27908 36.9 36.818 37.097 0 23 13 3 0 0 0 8.7369 1 19639 19639 10.183 0 1 1707400 + 80108 20953 53589 54718 93283 93283 -0.007882591031830088 YRDSITTRLED 11 Unmodified _YRDSITTRLED_ 0 0 0 REV__ENSG00000111860|ENST00000368491|CEP85L REV__ENSG00000111860|ENST00000368491|CEP85L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 684.84130859375 2 684.84133 1367.66811 NaN NaN NaN NaN NaN NaN NaN 93.91 1 93.91 93.41 94.41 0 0 0 0 0.9435 1 51915 51915 0 0 1 + 80109 18773 53590 54719 93284 93284 -0.0010195696700066037 YRDSLGYSKI 10 Unmodified _YRDSLGYSKI_ 0 0 0 REV__ENSG00000175718|ENST00000424776|RBMXL3 REV__ENSG00000175718|ENST00000424776|RBMXL3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.8779602050781 3 401.211906 1200.61389 -0.34406 -0.00013804 1.0402 0.00041733 0.69612 0.00027929 401.2125724157731 35.33 0.22237 35.108 34.979 35.201 -0.2224 16 9 2 0 0 0 0.23946 1 18485 18485 3.5871 0.85186 1 2242500 + 80110 22889 53591 54720 93285 93285 0.021604956721375856 YRDSQHRI 8 Unmodified _YRDSQHRI_ 0 0 0 REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF REV__ENST00000452606.2_1_3:12880846-12881736:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 358.8550109863281 3 358.852823 1073.53664 NaN NaN NaN NaN NaN NaN NaN 40.893 1 36.285 35.785 36.785 -4.6079 0 0 0 0.92452 1 24477 24477 15.847 0 1 + 80111 20729 53592 54721 93286 93286 0.002813222464737919 YRDYCMMVL 9 Unmodified _YRDYCMMVL_ 0 0 0 REV__ENSG00000221858|ENST00000641592|OR2A12 REV__ENSG00000221858|ENST00000641592|OR2A12 MSMS AL20221201_MKP_PDAC_01 4 398.5116882324219 3 398.509912 1192.50791 NaN NaN NaN NaN NaN NaN NaN 15.991 1 13.434 12.934 13.934 -2.557 0 0 0 0.82396 1 8253 8253 5.2969 3.3905 1 + 80112 24361 53593 54722 93287 93287 -0.08064622760844031 YRDYDIPFT 9 Unmodified _YRDYDIPFT_ 0 0 0 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 ENSG00000188177|ENST00000409871|ZC3H6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.5232238769531 3 397.188989 1188.54514 0.16535 6.5675E-05 -0.78314 -0.00031106 -0.61779 -0.00024538 397.52307652801886 38.267 0.2123 38.267 38.108 38.32 0 19 14 2 0 0 0 0.49272 2 20392 20392;20407 4.897 1.0511 1 8813000 80113 9637 53594 54723 93288;93289 93288 -0.041591686275978645 YRECERYF 8 Unmodified _YRECERYF_ 0 0 0 REV__ENST00000361545.9_1_7:73818191-73818509:+|nuORF REV__ENST00000361545.9_1_7:73818191-73818509:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 389.1744995117188 3 389.174686 1164.50223 -0.45221 -0.00017599 -0.22776 -8.8639E-05 -0.67997 -0.00026463 389.17469115927895 35.982 0.25093 35.759 35.642 35.893 -0.2224 46 11 5 0 0 0 0.80143 1 18804 18804 3.9444 0 1 129550000 + 80114 25928 53595 54724 93290 93290 -0.07344261956654918 YRECERYF 8 Unmodified _YRECERYF_ 0 0 0 REV__ENST00000361545.9_1_7:73818191-73818509:+|nuORF REV__ENST00000361545.9_1_7:73818191-73818509:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.1753540039062 3 389.174686 1164.50223 0.89512 0.00034836 0.14679 5.7129E-05 1.0419 0.00040549 389.17480114477286 40.37 1.2378 35.84 35.595 36.833 -4.5294 214 81 4 0 0 0 0.80143 2 24128 24128;24545 3.9444 1.4459 1 83299000 + 80115 25928 53595 54724 93291;93292 93291 -0.07344261956654918 YRELLEPTVPY 11 Unmodified _YRELLEPTVPY_ 0 0 0 REV__ENSG00000197943|ENST00000564138|PLCG2 REV__ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 460.5785522460938 3 460.578365 1378.71327 1.1585 0.00053358 0.72341 0.00033319 1.8819 0.00086676 460.5788579049065 89.672 0.21854 83.497 83.362 83.58 -6.1757 16 11 2 0 0 0 0.58219 1 59211 59211 6.6235 0.3891 1 8003400 + 80116 23971 53596 54725 93293 93293 0.039058935662524163 YRESSMVTL 9 Unmodified _YRESSMVTL_ 0 0 0 REV__ENSG00000181408|ENST00000313135|UTS2R REV__ENSG00000181408|ENST00000313135|UTS2R MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.0220947265625 3 362.514708 1084.5223 1.6694 0.0006052 0.21507 7.7968E-05 1.8845 0.00068317 362.51471703396953 19.442 0.2363 16.786 16.689 16.926 -2.6564 33 24 2 0 0 0 0.21367 1 10261 10261 1.0715 0 1 5098700 + 80117 23203 53597 54726 93294 93294 -0.016585110166943196 YREVWLIRL 9 Unmodified _YREVWLIRL_ 0 0 0 nc|ENSG00000156384|Q86XK3-2|SFR1 nc|ENSG00000156384|Q86XK3-2|SFR1 nc|ENSG00000156384|Q86XK3-2|SFR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.580078125 3 416.580152 1246.71863 1.0788 0.00044939 -0.65562 -0.00027312 0.42314 0.00017627 416.57976526281027 46.942 0.26314 46.909 46.733 46.996 -0.033417 16 12 2 0 0 0 0.49766 1 25259 25259 7.609 2.2062 1 3068800 80118 16292 53598 54727 93295 93295 0.10513661939353369 YREVYREH 8 Unmodified _YREVYREH_ 0 0 0 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant;ENSG00000182261|ENST00000691676|NLRP10 NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant NLRP10|p.C618Mfs*13|1|0.22|ENSG00000182261|chr11:7959760-7959761|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.5249938964844 3 384.524595 1150.55196 NaN NaN NaN NaN NaN NaN NaN 19.443 1 19.443 18.943 19.943 0 0 0 0 0.97444 1 9722 9722 0.40072 0 1 80119 9039 53599 54728 93296 93296 -0.01729810956339861 YREWERKYREW 11 Unmodified _YREWERKYREW_ 0 0 0 nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 nc|ENSG00000122257|Q7Z6E9-2|RBBP6 MSMS AL20221201_MKP_PDAC_01 4 850.9197998046875 2 850.918238 1699.82192 NaN NaN NaN NaN NaN NaN NaN 60.155 1 54.041 53.541 54.541 -6.1147 0 0 0 0.94301 1 38690 38690 0.35063 0.35063 1 80120 3628 53600 54729 93297 93297 4.975892125003156E-06 YREWRRYYEVW 11 Unmodified _YREWRRYYEVW_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 853.418212890625 2 853.415331 1704.81611 NaN NaN NaN NaN NaN NaN NaN 95.908 1 95.908 95.408 96.408 0 0 0 0 0.9435 1 53006 53006 0 0 1 80121 3347 53601 54730 93298 93298 -0.008106009224320587 YREWRRYYEVW 11 Unmodified _YREWRRYYEVW_ 0 0 0 ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT ENSG00000118017|ENST00000236709|A4GNT MSMS AL20221201_MKP_PDAC_01 4 853.4181518554688 2 853.415331 1704.81611 NaN NaN NaN NaN NaN NaN NaN 80.306 1 74.13 73.63 74.63 -6.1757 0 0 0 0.9435 1 52684 52684 0 0 1 80122 3347 53601 54730 93299 93299 -0.008106009224320587 YRFESYGCY 9 Unmodified _YRFESYGCY_ 0 0 0 ENST00000278174.9_1_11:13466690-13484663:-|nuORF ENST00000278174.9_1_11:13466690-13484663:-|nuORF ENST00000278174.9_1_11:13466690-13484663:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 396.5000610351562 3 396.499058 1186.47534 NaN NaN NaN NaN NaN NaN NaN 47.052 1 47.018 46.518 47.518 -0.033417 0 0 0 0.82739 1 25338 25338 2.4985 0 1 80123 11397 53602 54731 93300 93300 -0.11043370567836064 YRFRGQLKF 9 Unmodified _YRFRGQLKF_ 0 0 0 REV__ENST00000306177.9_1_7:6180548-6180581:+|nuORF REV__ENST00000306177.9_1_7:6180548-6180581:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 405.8698425292969 3 405.564614 1213.67201 NaN NaN NaN NaN NaN NaN NaN 44.965 1 40.113 39.613 40.613 -4.852 0 0 0 0.63508 1 27520 27520 11.495 6.5977 1 + 80124 25375 53603 54732 93301 93301 0.07372222108074311 YRFSLADG 8 Unmodified _YRFSLADG_ 0 0 0 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENSG00000124151|ENST00000371998|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 nc|ENSG00000124151|Q9Y6Q9-4|NCOA3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 928.4507446289062 1 928.452308 927.445031 0.99369 0.00092259 0.72813 0.00067603 1.7218 0.0015986 928.4529067600562 63.453 0.78197 57.277 57 57.782 -6.1757 51 44 2 0 0 0 0.42423 1 40944 40944 42.095 6.0504 1 10131000 80125 3749 53604 54733 93302 93302 -0.02159361170708962 YRFSSGKSCLL 11 Unmodified _YRFSSGKSCLL_ 0 0 0 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 REV__nc|ENSG00000165694|Q6ZUT3-2|FRMD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.8240356445312 2 630.823898 1259.63324 NaN NaN NaN NaN NaN NaN NaN 102.7 1 102.7 102.2 103.2 0 0 0 0 0.9435 1 56632 56632 0 0 1 + 80126 22039 53605 54734 93303 93303 0.013811286914233278 YRFSSRCLQC 10 Unmodified _YRFSSRCLQC_ 0 0 0 REV__ENSG00000161940|ENST00000293805|BCL6B REV__ENSG00000161940|ENST00000293805|BCL6B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 421.5293884277344 3 421.530475 1261.5696 NaN NaN NaN NaN NaN NaN NaN 53.854 1 53.788 53.288 54.288 -0.066936 0 0 0 0.8671 1 29231 29231 5.4027 2.0831 1 + 80127 21615 53606 54735 93304 93304 -0.050725550173183365 YRFTKRCE 8 Unmodified _YRFTKRCE_ 0 0 0 REV__ENSG00000128000|ENST00000434248|ZNF780B REV__ENSG00000128000|ENST00000434248|ZNF780B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.255859375 2 551.776751 1101.53895 NaN NaN NaN NaN NaN NaN NaN 86.813 1 86.813 86.313 87.313 0 0 0 0 0.97444 1 48080 48080 0.69038 0.16561 1 + 80128 19598 53607 54736 93305 93305 -0.0077596534008534945 YRFVGEGGVRM 11 Unmodified _YRFVGEGGVRM_ 0 0 0 ENSG00000169347|ENST00000302555|GP2;nc|ENSG00000169347|P55259|GP2 ENSG00000169347|ENST00000302555|GP2 ENSG00000169347|ENST00000302555|GP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.2161865234375 3 424.216885 1269.62883 1.4211 0.00060285 -1.5221 -0.00064569 -0.101 -4.2845E-05 424.2164763102122 21.214 0.53661 18.521 18.134 18.671 -2.693 84 32 4 0 0 0 0.66619 1 11424 11424 7.4291 5.6868 1 16855000 80129 7867 53608 54737 93306 93306 0.004796642684823382 YRFVNRHCRP 10 Unmodified _YRFVNRHCRP_ 0 0 0 REV__nc|ENSG00000122126|Q01968-2|OCRL REV__nc|ENSG00000122126|Q01968-2|OCRL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 674.3461303710938 2 674.346197 1346.67784 NaN NaN NaN NaN NaN NaN NaN 96.239 1 96.239 95.739 96.739 0 0 0 0 1.0024 1 53185 53185 0.40072 0 1 + 80130 19329 53609 54738 93307 93307 0.018369973480957924 YRFVPQFNQ 9 Unmodified _YRFVPQFNQ_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 399.8632507324219 3 400.204974 1197.59309 0.12383 4.9556E-05 -0.75141 -0.00030072 -0.62758 -0.00025116 400.5392712163946 39.549 0.22628 39.561 39.427 39.654 0.011452 15 10 2 0 0 0 0.20207 1 21018 21018 11.495 0.6952 1 1829800 + 80131 20993 53610 54739 93308 93308 0.002199500831466139 YRFVQRINSVR 11 Unmodified _YRFVQRINSVR_ 0 0 0 REV__ENST00000536995.5_1_11:72538171-72539572:+|nuORF REV__ENST00000536995.5_1_11:72538171-72539572:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 479.9399108886719 3 479.940632 1436.80007 0.10541 5.0591E-05 -0.36388 -0.00017464 -0.25847 -0.00012405 479.9404456734135 29.177 0.19505 29.207 29.079 29.274 0.030104 15 7 3 0 0 0 0.70435 1 15216 15216 3.8459 1.2147 1 3443100 + 80132 28544 53611 54740 93309 93309 0.09913737631313779 YRFYCNNENCS 11 Unmodified _YRFYCNNENCS_ 0 0 0 nc|ENSG00000139144|O75747-2|PIK3C2G;ENSG00000139144|ENST00000538779|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G nc|ENSG00000139144|O75747-2|PIK3C2G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.5184631347656 3 471.516783 1411.52852 -0.25053 -0.00011813 1.0101 0.0004763 0.75962 0.00035817 471.51732816755737 35.974 0.30401 35.999 35.864 36.168 0.024971 36 13 4 0 0 0 0.74046 1 19027 19027 0.45452 0 1 6195600 80133 5127 53612 54741 93310 93310 -0.1607836084747305 YRGDPPCQPD 10 Unmodified _YRGDPPCQPD_ 0 0 0 REV__ENSG00000112299|ENST00000367928|VNN1 REV__ENSG00000112299|ENST00000367928|VNN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.2459106445312 2 574.24548 1146.47641 1.3207 0.0007584 -0.37077 -0.00021291 0.94992 0.00054549 574.2456353003449 54.125 0.37075 48.26 48.048 48.419 -5.8653 33 20 2 0 0 0 0.35903 1 34250 34250 24.021 5.8856 1 40240000 + 80134 18806 53613 54742 93311 93311 -0.09097156198936318 YRGIFPVL 8 Unmodified _YRGIFPVL_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.7843322753906 2 482.78437 963.554188 0.25876 0.00012493 0.51372 0.00024802 0.77249 0.00037294 482.7845875539096 76.416 0.42343 76.464 76.272 76.696 0.047943 55 17 4 0 0 0 0.48669 2 42243 42135;42243 36.044 14.457 1 28488000 80135 954 53614 54743 93312;93313 93313 0.07095269519413705 YRGIFPVL 8 Unmodified _YRGIFPVL_ 0 0 0 nc|ENSG00000067225|P14618-3|PKM;nc|ENSG00000067225|P14618-2|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF nc|ENSG00000067225|P14618-3|PKM nc|ENSG00000067225|P14618-3|PKM MULTI-MSMS AL20221201_MKP_PDAC_01 4 482.7852172851562 2 482.78437 963.554188 1.2545 0.00060565 -0.22782 -0.00010999 1.0267 0.00049566 482.7842029041347 97.02 0.4617 90.844 90.656 91.117 -6.1757 56 26 3 0 0 0 0.37649 2 64240 64240;64362 46.921 18.748 1 118530000 80136 954 53614 54743 93314;93315 93314 0.07095269519413705 YRGIGRVLVP 10 Unmodified _YRGIGRVLVP_ 0 0 0 REV__ENST00000464696.2_1_12:83545187-83545313:+|nuORF REV__ENST00000464696.2_1_12:83545187-83545313:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 565.344970703125 2 565.345658 1128.67676 NaN NaN NaN NaN NaN NaN NaN 103.73 1 103.68 103.18 104.18 -0.048737 0 0 0 1.0004 1 57605 57605 1.4819 0 1 + 80137 17823 53615 54744 93316 93316 0.11757106250843208 YRGNWLLREYA 11 Unmodified _YRGNWLLREYA_ 0 0 0 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 REV__nc|ENSG00000070610|Q9HCG7-2|GBA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 480.9172973632812 3 480.917604 1439.73098 0.91403 0.00043957 -0.73677 -0.00035432 0.17727 8.5251E-05 480.9172283888501 54.677 0.21333 54.677 54.528 54.741 0 13 8 2 0 0 0 0.72131 1 30382 30382 2.2527 0 1 1720600 + 80138 17475 53616 54745 93317 93317 0.028706536117397263 YRGQDRSQCCM 11 Unmodified _YRGQDRSQCCM_ 0 0 0 REV__ENSG00000274209|ENST00000620264|ANTXRL REV__ENSG00000274209|ENST00000620264|ANTXRL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 449.5194702148438 3 449.518129 1345.53256 -0.047398 -2.1306E-05 1.5637 0.0007029 1.5163 0.0006816 449.8529184313489 37.991 0.16408 37.719 37.618 37.782 -0.27133 13 7 2 0 0 0 0.73115 1 19980 19980 0.45452 0 1 2837600 + 80139 24640 53617 54746 93318 93318 -0.12638594625423138 YRGRYHHL 8 Unmodified _YRGRYHHL_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 368.1966247558594 3 367.861542 1100.5628 1.4671 0.00053968 -0.83237 -0.0003062 0.63471 0.00023348 368.19529579141465 42.376 0.45689 37.692 37.477 37.934 -4.6846 56 30 3 0 0 0 0.71616 1 25563 25563 11.64 5.8569 1 11656000 + 80140 23865 53618 54747 93319 93319 0.016536362085844303 YRGSDGAR 8 Unmodified _YRGSDGAR_ 0 0 0 REV__ENSG00000161640|ENST00000447370|SIGLEC11 REV__ENSG00000161640|ENST00000447370|SIGLEC11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 441.2142028808594 2 441.21484 880.415128 NaN NaN NaN NaN NaN NaN NaN 15.972 1 15.958 15.458 16.458 -0.014067 0 0 0 0.97444 1 7862 7862 0.79363 0 1 + 80141 21601 53619 54748 93320 93320 -0.029863001160606473 YRHFFGHTF 9 Unmodified _YRHFFGHTF_ 0 0 0 nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1;ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-3|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 nc|ENSG00000260916|Q9ULG6-2|CCPG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.5301208496094 3 404.52968 1210.56721 -0.32088 -0.00012981 0.89092 0.0003604 0.57004 0.0002306 404.5302499311882 37.44 0.18112 37.462 37.375 37.556 0.021545 14 8 2 0 0 0 0.05447 1 19872 19872 33.445 29.255 1 1806600 80142 10833 53620 54749 93321 93321 -0.029648993684986635 YRHRTARET 9 Unmodified _YRHRTARET_ 0 0 0 REV__ENSG00000103319|ENST00000263026|EEF2K REV__ENSG00000103319|ENST00000263026|EEF2K MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.2109680175781 3 397.21101 1188.6112 NaN NaN NaN NaN NaN NaN NaN 0.29047 1 0.29047 -0.20953 0.79047 0 0 0 0 0.8622 1 145 145 0 0 1 + 80143 18301 53621 54750 93322 93322 0.02444085057823031 YRHSYEYQREN 11 Unmodified _YRHSYEYQREN_ 0 0 0 ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2 ENST00000484699.1_1_1:155239218-155239476:-|nuORF ENST00000484699.1_1_1:155239218-155239476:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.8488159179688 2 772.847478 1543.6804 0.4053 0.00031323 1.1987 0.00092641 1.604 0.0012396 772.8483368221862 73.751 0.54618 73.275 73.092 73.638 -0.47588 65 25 3 0 0 0 0.71341 1 40384 40384 2.9952 0.26005 1 4581400 80144 8594 53622 54751 93323 93323 -0.06968920503913978 YRHSYEYQREN 11 Unmodified _YRHSYEYQREN_ 0 0 0 ENST00000484699.1_1_1:155239218-155239476:-|nuORF;nc|ENSG00000176444|P49760-2|CLK2;ENST00000476983.5_1_1:155238132-155243105:-|nuORF;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2 ENST00000484699.1_1_1:155239218-155239476:-|nuORF ENST00000484699.1_1_1:155239218-155239476:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 772.8489379882812 2 772.847478 1543.6804 0.44571 0.00034446 1.3777 0.0010647 1.8234 0.0014092 772.8485052345641 75.326 0.22417 74.849 74.696 74.92 -0.47714 24 10 3 0 0 0 0.71341 1 41194 41194 2.9952 0.26005 1 3200500 80145 8594 53622 54751 93324 93324 -0.06968920503913978 YRHTTEKEL 9 Unmodified _YRHTTEKEL_ 0 0 0 REV__ENSG00000164163|ENST00000296577|ABCE1 REV__ENSG00000164163|ENST00000296577|ABCE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.5340881347656 3 392.871772 1175.59349 0.064355 2.5283E-05 3.2123 0.001262 3.2767 0.0012873 392.8738584312118 28.242 0.11983 28.272 28.188 28.308 0.029564 5 4 2 0 0 0 0.209 1 14695 14695 4.5289 2.0304 1 1301900 + 80146 21881 53623 54752 93325 93325 0.012713250123397302 YRHTTEKEL 9 Unmodified _YRHTTEKEL_ 0 0 0 REV__ENSG00000164163|ENST00000296577|ABCE1 REV__ENSG00000164163|ENST00000296577|ABCE1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.871772 1175.59349 -0.77075 -0.00030281 6.1769 0.0024267 5.4062 0.0021239 392.8743028156343 28.406 0.34889 28.406 28.251 28.6 0 0.083956 -0.00034421 NaN 7.609 67 19 4 NaN NaN NaN NaN 0 NaN NaN 0 53360000 + 80147 21881 53623 54752 0.012713250123397302 YRHTTEKEL 9 Unmodified _YRHTTEKEL_ 0 0 0 REV__ENSG00000164163|ENST00000296577|ABCE1 REV__ENSG00000164163|ENST00000296577|ABCE1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 392.871772 1175.59349 0.58821 0.00023109 6.0686 0.0023842 6.6568 0.0026153 392.87392053346304 28.357 0.16933 28.295 28.199 28.368 -0.062159 -0.027498 -0.00047192 NaN 7.609 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 3408400 + 80148 21881 53623 54752 0.012713250123397302 YRHYRCCR 8 Unmodified _YRHYRCCR_ 0 0 0 ENST00000448464.6_1_8:95941986-95942052:-|nuORF ENST00000448464.6_1_8:95941986-95942052:-|nuORF ENST00000448464.6_1_8:95941986-95942052:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.1830139160156 3 386.179888 1155.51784 1.5308 0.00059117 -1.8137 -0.00070042 -0.2829 -0.00010925 386.179192026473 37.029 0.41562 32.745 32.54 32.955 -4.2835 55 25 3 0 0 0 0.79887 1 21732 21732 7.2892 3.4129 1 19565000 80149 13493 53624 54753 93326 93326 -0.053702539205914945 YRIAKPDLI 9 Unmodified _YRIAKPDLI_ 0 0 0 ENST00000449309.1_1_7:99146032-99149718:-|nuORF ENST00000449309.1_1_7:99146032-99149718:-|nuORF ENST00000449309.1_1_7:99146032-99149718:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 363.5538940429688 3 363.553603 1087.63898 -0.11 -3.999E-05 0.28546 0.00010378 0.17546 6.3789E-05 363.55375508086354 41.419 0.24988 41.116 40.964 41.214 -0.30304 21 11 2 0 0 0 0.43463 1 21959 21959 10.8 6.2706 1 7750300 80150 13501 53625 54754 93327 93327 0.09866595265361866 YRIAKPDLI 9 Unmodified _YRIAKPDLI_ 0 0 0 ENST00000449309.1_1_7:99146032-99149718:-|nuORF ENST00000449309.1_1_7:99146032-99149718:-|nuORF ENST00000449309.1_1_7:99146032-99149718:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.5534362792969 3 363.553603 1087.63898 0.069839 2.539E-05 0.17989 6.5398E-05 0.24972 9.0788E-05 363.5535240188982 41.1 0.25058 41.098 40.97 41.221 -0.0017891 20 11 2 0 0 0 0.41742 1 21967 21967 11.495 6.5977 1 3836000 80151 13501 53625 54754 93328 93328 0.09866595265361866 YRIASFLQLK 10 Unmodified _YRIASFLQLK_ 0 0 0 ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000580963.1_1_17:65211970-65214920:-|nuORF;ENST00000580662.5_1_17:65186450-65214920:-|nuORF;ENST00000584641.5_1_17:65197178-65214920:-|nuORF ENSG00000198265|ENST00000358691|HELZ ENSG00000198265|ENST00000358691|HELZ MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 413.5802612304688 3 413.580041 1237.71829 0.41809 0.00017291 -0.11154 -4.6129E-05 0.30655 0.00012678 413.58003545084864 52.259 0.3214 52.2 52.027 52.348 -0.058918 48 15 4 0 0 0 0.5543 1 28352 28352 13.519 2.0008 1 29533000 80152 10070 53626 54755 93329 93329 0.10894242219501393 YRIDNLAAMAD 11 Unmodified _YRIDNLAAMAD_ 0 0 0 REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF REV__ENST00000492964.1_1_2:175664846-175666604:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2038269042969 3 418.204534 1251.59177 NaN NaN NaN NaN NaN NaN NaN 26.758 1 26.758 26.258 27.258 0 0 0 0 0.93669 1 13767 13767 2.2527 1.143 1 + 80153 19629 53627 54756 93330 93330 -0.023960520679338515 YRIDQKNLKS 10 Unmodified _YRIDQKNLKS_ 0 0 0 REV__ENSG00000091106|ENST00000402280|NLRC4 REV__ENSG00000091106|ENST00000402280|NLRC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2403259277344 3 422.238455 1263.69353 -0.23848 -0.0001007 3.2378 0.0013671 2.9994 0.0012664 422.23966371441537 31.915 0.15297 31.945 31.906 32.059 0.030106 9 6 2 0 0 0 0.67459 1 16781 16781 3.0723 1.33 1 1550800 + 80154 17880 53628 54757 93331 93331 0.07223562346121071 YRIDWYHIS 9 Unmodified _YRIDWYHIS_ 0 0 0 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 REV__nc|ENSG00000197603|Q9H799-5|CPLANE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2076721191406 3 418.208495 1251.60366 NaN NaN NaN NaN NaN NaN NaN 18.152 1 18.152 17.652 18.652 0 0 0 0 0.83329 1 9003 9003 2.086 1.4592 1 + 80155 23945 53629 54758 93332 93332 -0.012080672624279032 YRIEKQSTY 9 Unmodified _YRIEKQSTY_ 0 0 0 REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12 REV__nc|ENSG00000119514|Q8IXK2-2|GALNT12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5380554199219 3 396.540022 1186.59824 -0.46421 -0.00018408 0.63911 0.00025343 0.1749 6.9355E-05 396.540287000725 24.948 0.20733 24.948 24.844 25.051 0 44 26 2 0 0 0 0.31356 2 12763 12763;12778 16.566 9.4642 1 4164700 + 80156 19193 53630 54759 93333;93334 93333 0.01240209155116645 YRIEPMVVPG 10 Unmodified _YRIEPMVVPG_ 0 0 0 ENSG00000085788|ENST00000397166|DDHD2;nc|ENSG00000085788|O94830-2|DDHD2;WHSC1L1-DDHD2|1|fusion ENSG00000085788|ENST00000397166|DDHD2 ENSG00000085788|ENST00000397166|DDHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 387.5440063476562 3 387.542598 1159.60597 1.4596 0.00056567 0.60933 0.00023614 2.069 0.00080181 387.543066577022 42.676 0.49451 37.992 37.747 38.241 -4.6846 84 32 4 0 0 0 0.63399 1 25799 25799 5.4027 0 1 81679000 80157 1418 53631 54760 93335 93335 0.03254645151037039 YRIERQDCL 9 Unmodified _YRIERQDCL_ 0 0 0 ENST00000287394.9_1_8:124340488-124340518:-|nuORF ENST00000287394.9_1_8:124340488-124340518:-|nuORF ENST00000287394.9_1_8:124340488-124340518:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.75146484375 3 399.201124 1194.58154 -0.38733 -0.00015462 -2.0071 -0.00080124 -2.3944 -0.00095586 399.53498760533193 29.38 0.14359 29.38 29.308 29.451 0 9 6 2 0 0 0 0.21144 1 15239 15239 4.1895 0 1 622640 80158 11447 53632 54761 93336 93336 -0.00796615002514045 YRIESPEL 8 Unmodified _YRIESPEL_ 0 0 0 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 ENSG00000119922|ENST00000371826|IFIT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7636108398438 2 503.763832 1005.51311 0.1975 9.9495E-05 -3.2599 -0.0016422 -3.0624 -0.0015427 503.7637068629702 45.26 0.44418 45.26 45.016 45.46 0 57 23 4 0 0 0 0.34916 1 24673 24673 49.933 9.9757 1 21457000 80159 3480 53633 54762 93337 93337 0.010574636892783928 YRIEYETDN 9 Unmodified _YRIEYETDN_ 0 0 0 REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF REV__ENST00000446149.6_1_1:38181546-38201012:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 401.8488464355469 3 401.515654 1201.52513 0.13987 5.6161E-05 -2.3409 -0.0009399 -2.201 -0.00088374 401.5143909277036 59.229 0.26013 59.229 59.095 59.355 0 19 10 2 0 0 0 0.55144 1 33044 33044 2.4985 0 1 4057400 + 80160 23336 53634 54763 93338 93338 -0.06756964358191908 YRIGKILDL 9 Unmodified _YRIGKILDL_ 0 0 0 REV__ENSG00000132518|ENST00000254854|GUCY2D REV__ENSG00000132518|ENST00000254854|GUCY2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 364.2259216308594 3 364.225486 1089.65463 0.37304 0.00013587 0.6221 0.00022658 0.99514 0.00036245 364.22568177832983 48.03 0.37891 47.991 47.805 48.184 -0.038643 50 18 4 0 0 0 0.23158 1 25957 25957 19.362 0 1 33159000 + 80161 19859 53635 54764 93339 93339 0.11338881782421595 YRIKQDEL 8 Unmodified _YRIKQDEL_ 0 0 0 REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.7906494140625 2 532.790381 1063.56621 0.24914 0.00013274 -0.085434 -4.5519E-05 0.16371 8.7221E-05 532.7905978431336 45.863 0.70383 45.835 45.421 46.125 -0.028011 75 34 4 0 0 0 0.42423 1 24623 24623 42.095 0 1 39346000 + 80162 26925 53636 54765 93340 93340 0.036968414719467546 YRILPSNG 8 Unmodified _YRILPSNG_ 0 0 0 REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 919.5006713867188 1 919.499592 918.492316 0.41854 0.00038484 3.5016 0.0032197 3.9201 0.0036045 919.5026503467599 100.66 0.082687 94.487 94.445 94.528 -6.1757 8 5 2 0 0 0 0.46494 1 67382 67382 38.151 7.9264 1 19102000 + 80163 17447 53637 54766 93341 93341 0.029809181002860896 YRIMLSYIRKV 11 Unmodified _YRIMLSYIRKV_ 0 0 0 ENST00000280098.8_1_2:139328714-139328831:+|nuORF ENST00000280098.8_1_2:139328714-139328831:+|nuORF ENST00000280098.8_1_2:139328714-139328831:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 481.2840576171875 3 481.283118 1440.82753 2.2172 0.0010671 0.63885 0.00030747 2.8561 0.0013746 481.2830218261294 95.485 1.0883 95.489 94.888 95.977 0.004158 84 40 3 0 0 0 0.74429 1 53287 53287 0.094841 0.011491 1 1997000 80164 11405 53638 54767 93342 93342 0.12474504847295975 YRIQMLSFAG 10 Unmodified _YRIQMLSFAG_ 0 0 0 nc|ENSG00000131471|Q16853-3|AOC3;nc|ENSG00000131471|Q16853-2|AOC3;ENSG00000131471|ENST00000308423|AOC3 nc|ENSG00000131471|Q16853-3|AOC3 nc|ENSG00000131471|Q16853-3|AOC3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.8729248046875 3 395.874348 1184.60121 NaN NaN NaN NaN NaN NaN NaN 16.787 1 16.792 16.292 17.292 0.0050564 0 0 0 0.96981 1 8433 8433 1.9064 0.31409 1 80165 4330 53639 54768 93343 93343 0.01629761008234709 YRIRIQAINEI 11 Unmodified _YRIRIQAINEI_ 0 0 0 ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B ENSG00000075420|ENST00000415807|FNDC3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 463.6052856445312 3 463.605137 1387.79358 0.43809 0.0002031 1.3948 0.00064665 1.8329 0.00084975 463.60493036123034 40.007 0.25484 40.012 39.873 40.128 0.0050583 20 11 3 0 0 0 0.58245 1 21307 21307 12.228 6.3594 1 3330200 80166 1157 53640 54769 93344 93344 0.11519799679945208 YRITSSYKI 9 Unmodified _YRITSSYKI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5454406738281 3 377.544996 1129.61316 -0.43219 -0.00016317 -0.38824 -0.00014658 -0.82043 -0.00030975 377.8792250515737 20.825 0.18128 20.825 20.712 20.894 0 37 20 3 0 0 0 0.58145 1 10476 10476 2.4985 1.427 1 1333900 80167 1160 53641 54770 93345 93345 0.05353701023091162 YRITSSYKI 9 Unmodified _YRITSSYKI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.5447692871094 3 377.544996 1129.61316 -0.74143 -0.00027992 -0.24673 -9.3151E-05 -0.98816 -0.00037307 377.545018903362 28.416 0.45178 28.416 28.271 28.723 0 64 24 4 0 0 0 0.37578 1 14637 14637 13.615 6.5131 1 20773000 80168 1160 53641 54770 93346 93346 0.05353701023091162 YRITSSYKI 9 Unmodified _YRITSSYKI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5451354980469 3 377.544996 1129.61316 0.73737 0.00027839 0.020138 7.6029E-06 0.75751 0.00028599 377.5450255590121 24.175 0.44316 21.348 21.091 21.534 -2.8273 80 24 5 0 0 0 0.27545 1 13177 13177 18.373 9.9288 1 124540000 80169 1160 53641 54770 93347 93347 0.05353701023091162 YRITSSYKI 9 Unmodified _YRITSSYKI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MSMS AL20221201_MKP_PDAC_01 4 377.5457153320312 3 377.544996 1129.61316 1.4796 0.0005586 -0.63427 -0.00023947 0.84528 0.00031913 377.54489222281404 32.206 0.34718 28.35 28.147 28.494 -3.8562 37 20 2 0 0 0 0.37578 1 18370 18370 13.615 2.097 1 42909000 80170 1160 53641 54770 93348 93348 0.05353701023091162 YRITSSYKI 9 Unmodified _YRITSSYKI_ 0 0 0 ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL ENSG00000075539|ENST00000358350|FRYL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 377.544996 1129.61316 -0.74143 -0.00027992 -0.24673 -9.3151E-05 -0.98816 -0.00037307 377.545018903362 28.416 0.45178 28.416 28.271 28.723 0 0.033266 0.0001794 NaN 13.615 64 24 4 NaN NaN NaN NaN 0 NaN NaN 0 20773000 80171 1160 53641 54770 0.05353701023091162 YRIYEFTIT 9 Unmodified _YRIYEFTIT_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-2|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5440979003906 3 402.544885 1204.61282 0.71986 0.00028978 -2.1258 -0.00085573 -1.4059 -0.00056596 402.54441136415073 28.331 0.4538 25.183 24.967 25.421 -3.1482 69 23 4 0 0 0 0.32871 1 15711 15711 10.8 1.0353 1 78303000 80172 665 53642 54771 93349 93349 0.0187028130321778 YRIYKQMVE 9 Unmodified _YRIYKQMVE_ 0 0 0 REV__ENSG00000167264|ENST00000565263|DUS2 REV__ENSG00000167264|ENST00000565263|DUS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 410.5488586425781 3 410.549753 1228.62743 -0.29234 -0.00012002 -2.3058 -0.00094666 -2.5982 -0.0010667 410.54880053919476 37.574 0.25285 37.591 37.438 37.691 0.01704 31 12 3 0 0 0 0.10734 1 19920 19920 23.79 0 1 4698300 + 80173 22198 53643 54772 93350 93350 0.022260301797359716 YRIYKQMVE 9 Unmodified _YRIYKQMVE_ 0 0 0 REV__ENSG00000167264|ENST00000565263|DUS2 REV__ENSG00000167264|ENST00000565263|DUS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 410.549753 1228.62743 0.037193 1.5269E-05 -3.2675 -0.0013415 -3.2303 -0.0013262 410.548214921192 37.981 0.38043 37.71 37.462 37.842 -0.27133 0.078073 -0.0004149 NaN 23.79 37 18 3 NaN NaN NaN NaN 0 NaN NaN 0 7020600 + 80174 22198 53643 54772 0.022260301797359716 YRIYKQMVE 9 Unmodified _YRIYKQMVE_ 0 0 0 REV__ENSG00000167264|ENST00000565263|DUS2 REV__ENSG00000167264|ENST00000565263|DUS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 410.549753 1228.62743 -0.29234 -0.00012002 -2.3058 -0.00094666 -2.5982 -0.0010667 410.54880053919476 37.574 0.25285 37.591 37.438 37.691 0.01704 -0.040968 0.0007695 NaN 23.79 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 4698300 + 80175 22198 53643 54772 0.022260301797359716 YRKDFQQL 8 Unmodified _YRKDFQQL_ 0 0 0 nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF nc|ENSG00000102786|Q9UL03-3|INTS6 nc|ENSG00000102786|Q9UL03-3|INTS6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.2907104492188 2 549.290548 1096.56654 0.31644 0.00017382 0.23954 0.00013157 0.55598 0.00030539 549.2907516782506 55.656 0.3953 55.178 54.964 55.36 -0.47798 41 18 4 0 0 0 0.26159 1 30170 30170 60.39 5.616 1 4055100 80176 2065 53644 54773 93351 93351 0.022122611917893664 YRKELFTK 8 Unmodified _YRKELFTK_ 0 0 0 REV__ENSG00000106588|ENST00000223321|PSMA2 REV__ENSG00000106588|ENST00000223321|PSMA2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.2101745605469 3 362.209836 1083.60768 NaN NaN NaN NaN NaN NaN NaN 28.444 1 28.444 27.944 28.944 0 0 0 0 0.96606 1 14692 14692 5.2969 1.3525 1 + 80177 18517 53645 54774 93352 93352 0.06922022231265146 YRKEWPLL 8 Unmodified _YRKEWPLL_ 0 0 0 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 ENSG00000138375|ENST00000357276|SMARCAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.8793029785156 3 368.878198 1103.61277 0.77085 0.00028435 -0.26833 -9.8979E-05 0.50252 0.00018537 368.8780849108658 46.266 0.30887 46.233 46.101 46.41 -0.033417 35 14 3 0 0 0 0.77186 1 24869 24869 10.824 0 1 13547000 80178 5044 53646 54775 93353 93353 0.06510326093894037 YRKGATKHII 10 Unmodified _YRKGATKHII_ 0 0 0 REV__ENSG00000134954|ENST00000392668|ETS1 REV__ENSG00000134954|ENST00000392668|ETS1 MSMS AL20221201_MKP_PDAC_01 4 396.2415161132812 3 396.240018 1185.69823 NaN NaN NaN NaN NaN NaN NaN 44.506 1 39.654 39.154 40.154 -4.852 0 0 0 0.81521 1 27181 27181 6.6304 0 1 + 80179 20027 53647 54776 93354 93354 0.11280491279558191 YRKKEPDFY 9 Unmodified _YRKKEPDFY_ 0 0 0 REV__nc|ENSG00000119599|Q8WV16-2|DCAF4 REV__nc|ENSG00000119599|Q8WV16-2|DCAF4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.316650390625 2 623.316763 1244.61897 NaN NaN NaN NaN NaN NaN NaN 95.609 1 95.241 94.741 95.741 -0.36814 0 0 0 0.85798 1 52220 52220 0.52476 0 1 + 80180 19196 53648 54777 93355 93355 0.006447995347571123 YRKKIKAK 8 Unmodified _YRKKIKAK_ 0 0 0 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 ENSG00000178105|ENST00000322536|DDX10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 517.8447875976562 2 517.845294 1033.67603 NaN NaN NaN NaN NaN NaN NaN 1.1272 1 1.1272 0.62724 1.6272 0 0 0 0 0.97444 1 547 547 0 0 1 80181 8732 53649 54778 93356 93356 0.16054311601760674 YRKKLKRGK 9 Unmodified _YRKKLKRGK_ 0 0 0 ENST00000502722.1_1_5:77784733-77784811:-|nuORF ENST00000502722.1_1_5:77784733-77784811:-|nuORF ENST00000502722.1_1_5:77784733-77784811:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.8873291015625 2 588.888024 1175.7615 -0.52409 -0.00030863 -0.25848 -0.00015222 -0.78257 -0.00046085 588.8876290121024 103.41 0.18761 103.36 103.26 103.45 -0.047928 16 7 3 0 0 0 0.62242 1 57411 57411 0 0 1 1684700 80182 14457 53650 54779 93357 93357 0.18064476787435524 YRKLEDLERQ 10 Unmodified _YRKLEDLERQ_ 0 0 0 REV__ENST00000421439.1_1_8:100708528-100708768:+|nuORF REV__ENST00000421439.1_1_8:100708528-100708768:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.5784606933594 3 450.577247 1348.70991 0.79705 0.00035913 -0.54494 -0.00024554 0.25212 0.0001136 450.5772216107715 22.349 0.31805 19.614 19.431 19.749 -2.7348 22 16 2 0 0 0 0.71276 1 12088 12088 0.62683 0 1 3838500 + 80183 26844 53651 54780 93358 93358 0.0495064351223391 YRKLTAVRT 9 Unmodified _YRKLTAVRT_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MSMS AL20221201_MKP_PDAC_01 4 369.8922729492188 3 369.892619 1106.65603 NaN NaN NaN NaN NaN NaN NaN 75.915 1 69.74 69.24 70.24 -6.1757 0 0 0 0.56988 1 49654 49654 13.615 0 1 80184 932 53652 54781 93359 93359 0.10696515871177326 YRKMEIYRPHK 11 Unmodified _YRKMEIYRPHK_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 761.414306640625 2 760.91137 1519.80819 0.3656 0.00027819 1.2369 0.00094117 1.6025 0.0012194 760.9124373898966 38.831 0.1627 38.842 38.757 38.92 0.011456 12 7 2 0 0 0 0.74046 1 20678 20678 1.3295 0.13619 1 2610000 80185 9847;3221 53653 54782 93360 93360 0.0690754855643263 YRKNLHLPL 9 Unmodified _YRKNLHLPL_ 0 0 0 REV__ENSG00000130035|ENST00000252318|GALNT8 REV__ENSG00000130035|ENST00000252318|GALNT8 MSMS AL20221201_MKP_PDAC_01 4 385.2350158691406 3 385.232864 1152.67676 NaN NaN NaN NaN NaN NaN NaN 93.36 1 87.185 86.685 87.685 -6.1757 0 0 0 0.83812 1 61789 61789 2.9952 0 1 + 80186 19692 53654 54783 93361 93361 0.10653106250833844 YRKVHIRR 8 Unmodified _YRKVHIRR_ 0 0 0 REV__ENSG00000109079|ENST00000226225|TNFAIP1 REV__ENSG00000109079|ENST00000226225|TNFAIP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 376.88916015625 3 376.568469 1126.68358 0.71333 0.00026862 3.5956 0.001354 4.309 0.0016226 376.5700478761289 49.531 0.23907 49.482 49.31 49.549 -0.048824 16 11 2 0 0 0 8.7369 1 26731 26731 10.074 3.4436 1 1810200 + 80187 18642 53655 54784 93362 93362 0.12530463922075796 YRLAEELL 8 Unmodified _YRLAEELL_ 0 0 0 ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH ENSG00000139549|ENST00000649637|DHH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 504.2430114746094 2 503.782025 1005.5495 0.82779 0.00041702 0.78161 0.00039376 1.6094 0.00081078 503.78250094322226 38.65 0.39741 38.65 38.414 38.811 0 57 19 4 0 0 0 8.7369 1 20520 20520 19.439 0 1 25123000 80188 5166 53656 54785 93363 93363 0.04694340586001999 YRLAEFHWKL 10 Unmodified _YRLAEFHWKL_ 0 0 0 CLSTN1|p.P443L|1|0.21|ENSG00000171603|chr1:9743912-9743912|G/A|missense_variant CLSTN1|p.P443L|1|0.21|ENSG00000171603|chr1:9743912-9743912|G/A|missense_variant CLSTN1|p.P443L|1|0.21|ENSG00000171603|chr1:9743912-9743912|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 455.2516479492188 3 454.915423 1361.72444 NaN NaN NaN NaN NaN NaN NaN 31.996 1 28.301 27.801 28.801 -3.6958 0 0 0 0.95639 1 18174 18174 5.4027 0.99656 1 80189 128 53657 54786 93364 93364 0.058047604510193196 YRLCIEDGQML 11 Unmodified _YRLCIEDGQML_ 0 0 0 REV__nc|ENSG00000005007|Q92900|UPF1 REV__nc|ENSG00000005007|Q92900|UPF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 447.5503845214844 3 447.549424 1339.62644 1.1357 0.00050827 0.5943 0.00026598 1.73 0.00077425 447.5495810977146 89.922 0.60108 83.746 83.526 84.127 -6.1757 86 33 3 0 0 0 0.68427 1 59593 59593 2.6312 0 1 18495000 + 80190 16959 53658 54787 93365 93365 -0.029785522514885088 YRLDLQGNEY 10 Unmodified _YRLDLQGNEY_ 0 0 0 ENST00000407916.2_1_7:55004007-55004829:+|nuORF ENST00000407916.2_1_7:55004007-55004829:+|nuORF ENST00000407916.2_1_7:55004007-55004829:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 424.20654296875 3 424.206932 1269.59897 -0.56701 -0.00024053 0.88574 0.00037574 0.31874 0.00013521 424.20728319146536 26.749 0.2964 26.749 26.592 26.889 0 47 13 5 0 0 0 0.65023 1 13729 13729 8.4443 2.6609 1 21702000 80191 12948 53659 54788 93366 93366 -0.025049961958302447 YRLEAHQSR 9 Unmodified _YRLEAHQSR_ 0 0 0 ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142 ENST00000433921.5_1_2:219503064-219516433:-|nuORF ENST00000433921.5_1_2:219503064-219516433:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.2045288085938 3 387.203744 1158.5894 NaN NaN NaN NaN NaN NaN NaN 28.425 1 28.425 27.925 28.925 0 0 0 0 0.7818 1 14682 14682 4.1895 0 1 80192 3139 53660 54789 93367 93367 0.016452803092761314 YRLEALPQFE 10 Unmodified _YRLEALPQFE_ 0 0 0 REV__ENSG00000196664|ENST00000380659|TLR7 REV__ENSG00000196664|ENST00000380659|TLR7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 422.5570983886719 3 422.555672 1264.64519 NaN NaN NaN NaN NaN NaN NaN 27.91 1 27.91 27.41 28.41 0 0 0 0 0.96104 1 14395 14395 4.7159 3.1236 1 + 80193 23859 53661 54790 93368 93368 0.023450687061995268 YRLECLFCL 9 Unmodified _YRLECLFCL_ 0 0 0 REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 387.8609313964844 3 387.192801 1158.55657 0.7466 0.00028908 -0.52804 -0.00020445 0.21856 8.4623E-05 387.1929651570785 75.128 0.28476 74.651 74.516 74.801 -0.47713 31 12 3 0 0 0 0.39863 3 41088 41088;41089;41198 8.1555 3.2585 1 2992500 + 80194 27925 53662 54791 93369;93370;93371 93369 -0.016363861294394155 YRLECLFCL 9 Unmodified _YRLECLFCL_ 0 0 0 REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 387.1936950683594 3 387.192801 1158.55657 0.19984 7.7379E-05 0.64268 0.00024884 0.84252 0.00032622 387.1937858315423 74.562 0.26924 74.608 74.458 74.728 0.045967 34 11 4 0 0 0 0.39863 1 41095 41095 8.1555 0.54658 1 2267700 + 80195 27925 53662 54791 93372 93372 -0.016363861294394155 YRLECLFCL 9 Unmodified _YRLECLFCL_ 0 0 0 REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 387.192801 1158.55657 0.7466 0.00028908 -0.52804 -0.00020445 0.21856 8.4623E-05 387.1929651570785 75.128 0.28476 74.651 74.516 74.801 -0.47713 0.021696 -0.00065853 NaN 8.1555 31 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2992500 + 80196 27925 53662 54791 -0.016363861294394155 YRLECLFCL 9 Unmodified _YRLECLFCL_ 0 0 0 REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF REV__ENST00000493660.5_1_17:38792069-38802054:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 387.192801 1158.55657 0.19984 7.7379E-05 0.64268 0.00024884 0.84252 0.00032622 387.1937858315423 74.562 0.26924 74.608 74.458 74.728 0.045967 -0.021696 0.00070135 NaN 8.1555 34 11 4 NaN NaN NaN NaN 0 NaN NaN 0 2267700 + 80197 27925 53662 54791 -0.016363861294394155 YRLEDQYL 8 Unmodified _YRLEDQYL_ 0 0 0 ENST00000455997.5_1_3:45763569-45764436:+|nuORF ENST00000455997.5_1_3:45763569-45764436:+|nuORF ENST00000455997.5_1_3:45763569-45764436:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.1844787597656 3 367.185468 1098.53457 NaN NaN NaN NaN NaN NaN NaN 25.014 1 25.014 24.514 25.514 0 0 0 0 0.97444 1 12806 12806 2.9952 0.71247 1 80198 13593 53663 54792 93373 93373 -0.010751512820206699 YRLEEMEKI 9 Unmodified _YRLEEMEKI_ 0 0 0 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 ENSG00000137200|ENST00000373451|CMTR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.2082824707031 3 404.209396 1209.60636 -0.5488 -0.00022183 -0.45365 -0.00018337 -1.0025 -0.0004052 404.20892550621267 29.697 0.16322 29.697 29.597 29.76 0 15 8 3 0 0 0 0.32871 1 15398 15398 15.248 3.7306 1 1869700 80199 4910 53664 54793 93374 93374 0.009940200802248 YRLEHATT 8 Unmodified _YRLEHATT_ 0 0 0 REV__nc|ENSG00000075651|Q13393-4|PLD1;REV__ENST00000471075.1_1_3:171371881-171395443:-|nuORF REV__nc|ENSG00000075651|Q13393-4|PLD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7535705566406 2 495.753798 989.493044 NaN NaN NaN NaN NaN NaN NaN 24.97 1 24.97 24.47 25.47 0 0 0 0 0.33381 1 12781 12781 60.39 14.369 1 + 80200 17573;27488 53665 54794 93375 93375 -0.0021228725066748666 YRLEHEVDL 9 Unmodified _YRLEHEVDL_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2008056640625 3 391.868139 1172.58259 0.0563 2.2062E-05 -3.4816 -0.0013643 -3.4253 -0.0013423 391.8668406773128 45.775 0.18372 45.747 45.642 45.826 -0.028011 11 8 2 0 0 0 0.4887 1 24609 24609 8.1555 3.2585 1 2912000 80201 1444 53666 54795 93376 93376 0.003199226380502296 YRLEHYTVTS 10 Unmodified _YRLEHYTVTS_ 0 0 0 ENSG00000086848|ENST00000616540|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8-2|ALG9 ENSG00000086848|ENST00000616540|ALG9 ENSG00000086848|ENST00000616540|ALG9 MSMS AL20221201_MKP_PDAC_01 4 423.5475463867188 3 423.547177 1267.6197 NaN NaN NaN NaN NaN NaN NaN 82.415 1 76.24 75.74 76.74 -6.1757 0 0 0 0.94014 1 54135 54135 3.3196 0 1 80202 1446 53667 54796 93377 93377 -0.0034040581620047305 YRLELLEQM 9 Unmodified _YRLELLEQM_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.75146484375 3 398.877758 1193.61144 -0.46461 -0.00018532 1.1188 0.00044626 0.65418 0.00026094 398.8781199649323 29.055 0.74704 29.055 28.761 29.508 0 65 36 2 0 0 0 0.20139 1 15239 15239 10.8 4.6077 1 1323000 80203 2185 53668 54797 93378 93378 0.022383239428108936 YRLELLEQM 9 Unmodified _YRLELLEQM_ 0 0 0 nc|ENSG00000104218|Q1MSJ5-1|CSPP1;ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 nc|ENSG00000104218|Q1MSJ5-1|CSPP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 398.877758 1193.61144 0.65664 0.00026192 -0.012491 -4.9823E-06 0.64415 0.00025694 398.87757096089007 32.801 0.28522 28.945 28.796 29.081 -3.8562 -0.055384 -0.00093519 NaN 10.8 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 6811300 80204 2185 53668 54797 0.022383239428108936 YRLETDDSGS 10 Unmodified _YRLETDDSGS_ 0 0 0 REV__nc|ENSG00000257923|Q13948|CUX1 REV__nc|ENSG00000257923|Q13948|CUX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 381.5036315917969 3 381.503525 1141.48875 -0.18872 -7.1997E-05 0.38164 0.0001456 0.19292 7.3599E-05 381.5038308435706 31.652 0.31734 31.652 31.503 31.82 0 46 15 4 0 0 0 0.67459 1 16474 16474 3.0723 1.33 1 10598000 + 80205 28807 53669 54798 93379 93379 -0.07633841254914842 YRLEVVSHMA 10 Unmodified _YRLEVVSHMA_ 0 0 0 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 ENSG00000142449|ENST00000600128|FBN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 402.2139892578125 3 402.209619 1203.60703 -0.47444 -0.00019083 4.2646 0.0017152 3.7901 0.0015244 402.544627164776 24.941 0.83628 24.941 24.61 25.447 0 155 60 4 0 0 0 0.64628 1 12739 12739 5.0475 0 1 41367000 80206 5414 53670 54799 93380 93380 0.013368595199153788 YRLHLNLPKL 10 Unmodified _YRLHLNLPKL_ 0 0 0 ENSG00000150773|ENST00000280350|PIH1D2 ENSG00000150773|ENST00000280350|PIH1D2 ENSG00000150773|ENST00000280350|PIH1D2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.9267272949219 3 422.927552 1265.76083 NaN NaN NaN NaN NaN NaN NaN 45.583 1 45.555 45.055 46.055 -0.028011 0 0 0 0.95639 1 24494 24494 5.4027 3.9476 1 80207 6073 53671 54800 93381 93381 0.1385763734772354 YRLLFPWV 8 Unmodified _YRLLFPWV_ 0 0 0 REV__nc|ENSG00000167291|Q8TBP0-3|TBC1D16 REV__nc|ENSG00000167291|Q8TBP0-3|TBC1D16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.2120361328125 3 365.211289 1092.61204 NaN NaN NaN NaN NaN NaN NaN 50.943 1 50.943 50.443 51.443 0 0 0 0 0.97444 1 28107 28107 0.40072 0 1 + 80208 22200 53672 54801 93382 93382 0.06943531444835571 YRLLGCSGFC 10 Unmodified _YRLLGCSGFC_ 0 0 0 ENST00000353196.5_1_17:40070148-40075245:-|nuORF ENST00000353196.5_1_17:40070148-40075245:-|nuORF ENST00000353196.5_1_17:40070148-40075245:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.7574462890625 2 559.759712 1117.50487 NaN NaN NaN NaN NaN NaN NaN 15.648 1 15.634 15.134 16.134 -0.014067 0 0 0 0.96981 1 7691 7691 3.9444 1.0552 1 80209 12051 53673 54802 93383 93383 -0.049181298233179405 YRLLLKVVKY 10 Unmodified _YRLLLKVVKY_ 0 0 0 REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF REV__ENST00000330736.9_1_16:89334888-89371640:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 432.2817687988281 3 432.279703 1293.81728 NaN NaN NaN NaN NaN NaN NaN 104.1 1 97.921 97.421 98.421 -6.1757 0 0 0 1.0048 1 69736 69736 0.13989 0.04505 1 + 80210 22213 53674 54803 93384 93384 0.18212265184433818 YRLLSISKMV 10 Unmodified _YRLLSISKMV_ 0 0 0 REV__ENSG00000071894|ENST00000616140|CPSF1 REV__ENSG00000071894|ENST00000616140|CPSF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 403.9059143066406 3 403.905648 1208.69511 -0.28328 -0.00011442 -0.85616 -0.00034581 -1.1394 -0.00046023 403.90526244617234 54.117 0.28021 54.05 53.882 54.162 -0.066936 42 13 4 0 0 0 0.67033 1 29443 29443 3.3196 0 1 19987000 + 80211 17500 53675 54804 93385 93385 0.09911480110531556 YRLNLSQDEI 10 Unmodified _YRLNLSQDEI_ 0 0 0 nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2 nc|ENSG00000138346|P51530-2|DNA2 nc|ENSG00000138346|P51530-2|DNA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.8215942382812 2 625.822409 1249.63027 0.20254 0.00012676 0.085983 5.381E-05 0.28853 0.00018057 625.8221241104684 37.878 0.30509 37.878 37.702 38.007 0 44 14 4 0 0 0 0.087043 1 20167 20167 49.554 5.5724 1 18473000 80212 5040 53676 54805 93386 93386 0.01543576838230365 YRLPFCQAHI 10 Unmodified _YRLPFCQAHI_ 0 0 0 ENSG00000205495|ENST00000380370|OR52J3 ENSG00000205495|ENST00000380370|OR52J3 ENSG00000205495|ENST00000380370|OR52J3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5516357421875 3 416.549976 1246.6281 1.265 0.00052693 2.1661 0.0009023 3.4311 0.0014292 416.550879539031 50.086 0.14054 50.037 49.986 50.127 -0.048824 11 6 2 0 0 0 0.66569 1 27101 27101 3.5871 0 1 1000500 80213 10368 53677 54806 93387 93387 0.014648696194399236 YRLQTLNQF 9 Unmodified _YRLQTLNQF_ 0 0 0 REV__ENSG00000101916|ENST00000218032|TLR8 REV__ENSG00000101916|ENST00000218032|TLR8 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 394.5841064453125 3 394.880379 1181.61931 0.80951 0.00031966 -0.047154 -1.862E-05 0.76235 0.00030104 395.2147424475603 44.633 0.45756 39.781 39.517 39.975 -4.852 78 36 3 0 0 0 0.21473 1 27174 27174 2.4985 0 1 52585000 + 80214 18203 53678 54807 93388 93388 0.03576219254591706 YRLQYCRAD 9 Unmodified _YRLQYCRAD_ 0 0 0 nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF nc|ENSG00000142949|P10586-2|PTPRF nc|ENSG00000142949|P10586-2|PTPRF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 396.5254516601562 3 396.525719 1186.55533 0.15117 5.9941E-05 -0.90945 -0.00036062 -0.75828 -0.00030068 396.52531446471994 59.235 0.33206 59.235 59.068 59.4 0 37 13 4 0 0 0 0.51218 1 33063 33063 7.1017 0.90987 1 18499000 80215 5454 53679 54808 93389 93389 -0.030488841739952477 YRLRKTLI 8 Unmodified _YRLRKTLI_ 0 0 0 REV__ENSG00000085563|ENST00000622132|ABCB1 REV__ENSG00000085563|ENST00000622132|ABCB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8978271484375 3 354.897593 1061.67095 1.257 0.00044609 -0.36035 -0.00012789 0.8966 0.0003182 354.8974453627431 50.103 0.42756 50.055 49.763 50.191 -0.048828 32 20 2 0 0 0 0.79669 1 27116 27116 10.074 0 1 2221700 + 80216 17754 53680 54809 93390 93390 0.14258007739181267 YRLRRRRPFK 10 Unmodified _YRLRRRRPFK_ 0 0 0 REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF REV__ENST00000287934.3_1_7:90894005-90894200:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 483.3004455566406 3 483.300494 1446.87965 NaN NaN NaN NaN NaN NaN NaN 4.0673 1 3.9945 3.4945 4.4945 -0.07287 0 0 0 1.0061 1 2007 2007 0 0 1 + 80217 25229 53681 54810 93391 93391 0.17408849095954793 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.4317626953125 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 67.263 1 67.263 66.763 67.763 0 0 0 0 0.9435 1 37511 37511 0 0 1 + 80218 29188 53682 54811 93392 93392 0.032780595418898884 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.4300537109375 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 74.095 1 74.095 73.595 74.595 0 0 0 0 0.9435 1 41237 41237 0 0 1 + 80219 29188 53682 54811 93393 93393 0.032780595418898884 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 841.4321899414062 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 74.288 1 74.288 73.788 74.788 0 0 0 0 0.9435 1 41340 41340 0 0 1 + 80220 29188 53682 54811 93394 93394 0.032780595418898884 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 841.4287109375 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 67.781 1 67.299 66.799 67.799 -0.48218 0 0 0 0.9435 1 37035 37035 0 0 1 + 80221 29188 53682 54811 93395 93395 0.032780595418898884 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 841.4280395507812 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 83.055 1 76.879 76.379 77.379 -6.1757 0 0 0 0.9435 1 54593 54593 0 0 1 + 80222 29188 53682 54811 93396 93396 0.032780595418898884 YRLRYRRFCYW 11 Unmodified _YRLRYRRFCYW_ 0 0 0 REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 841.4329223632812 2 841.430261 1680.84597 NaN NaN NaN NaN NaN NaN NaN 99.389 1 93.213 92.713 93.713 -6.1757 0 0 0 0.9435 1 66175 66175 0 0 1 + 80223 29188 53682 54811 93397 93397 0.032780595418898884 YRLSFLKED 9 Unmodified _YRLSFLKED_ 0 0 0 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 390.8776245117188 3 390.876634 1169.60807 0.12389 4.8426E-05 1.595 0.00062343 1.7188 0.00067186 390.87740046469037 50.585 0.29526 50.585 50.389 50.685 0 21 13 2 0 0 0 0.60825 1 27894 27894 0.86438 0.087843 1 1272900 80224 6374 53683 54812 93398 93398 0.030053971604502294 YRLSFLKED 9 Unmodified _YRLSFLKED_ 0 0 0 nc|ENSG00000155229|Q96T76-5|MMS19;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19;nc|ENSG00000155229|Q96T76-8|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 nc|ENSG00000155229|Q96T76-5|MMS19 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 390.876634 1169.60807 0.40509 0.00015834 1.8303 0.00071541 2.2354 0.00087375 390.87719444248523 50.923 0.51642 50.869 50.49 51.007 -0.053871 0.14222 8.1686E-05 NaN 0.86438 72 25 4 NaN NaN NaN NaN 0 NaN NaN 0 11091000 80225 6374 53683 54812 0.030053971604502294 YRLSKLVEI 9 Unmodified _YRLSKLVEI_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.2290954589844 3 374.229008 1119.66519 0.87942 0.0003291 -0.72475 -0.00027122 0.15467 5.7882E-05 374.2287347589001 49.663 0.43475 49.615 49.371 49.805 -0.048828 60 21 4 0 0 0 0.022193 1 26856 26856 63.961 8.4578 1 58763000 + 80226 22669 53684 54813 93399 93399 0.11014864436833705 YRLSKLVEI 9 Unmodified _YRLSKLVEI_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.2295532226562 3 374.229008 1119.66519 1.8755 0.00070185 -0.27635 -0.00010342 1.5991 0.00059843 374.2288800164492 90.684 0.53453 84.508 84.236 84.771 -6.1757 80 31 3 0 0 0 0.023481 2 59796 59796;60056 55.235 6.3712 1 78011000 + 80227 22669 53684 54813 93400;93401 93400 0.11014864436833705 YRLSKLVEI 9 Unmodified _YRLSKLVEI_ 0 0 0 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 REV__nc|ENSG00000172728|Q6P4F1-4|FUT10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 374.229008 1119.66519 0.87942 0.0003291 -0.72475 -0.00027122 0.15467 5.7882E-05 374.2287347589001 49.663 0.43475 49.615 49.371 49.805 -0.048828 0.012024 -0.00027979 NaN 63.961 60 21 4 NaN NaN NaN NaN 0 NaN NaN 0 58763000 + 80228 22669 53684 54813 0.11014864436833705 YRLSQACMF 9 Unmodified _YRLSQACMF_ 0 0 0 nc|ENSG00000198130|Q6NVY1-2|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH nc|ENSG00000198130|Q6NVY1-2|HIBCH MSMS AL20221201_MKP_PDAC_01 4 559.7581787109375 2 559.759712 1117.50487 NaN NaN NaN NaN NaN NaN NaN 16.225 1 13.668 13.168 14.168 -2.557 0 0 0 0.82739 1 8389 8389 4.3292 0.73274 1 80229 16491 53685 54814 93402 93402 -0.04918129823340678 YRLSRVIEP 9 Unmodified _YRLSRVIEP_ 0 0 0 ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3 ENSG00000205517|ENST00000380456|RGL3 ENSG00000205517|ENST00000380456|RGL3 MSMS AL20221201_MKP_PDAC_01 4 378.2217102050781 3 378.220624 1131.64004 NaN NaN NaN NaN NaN NaN NaN 44.197 1 39.345 38.845 39.845 -4.852 0 0 0 0.6557 1 26951 26951 10.8 5.9025 1 80230 10369 53686 54815 93403 93403 0.0794880963428568 YRLVINDGKL 10 Unmodified _YRLVINDGKL_ 0 0 0 ENST00000474908.5_1_9:35813053-35813759:-|nuORF;ENSG00000137133|ENST00000259667|HINT2;ENST00000474848.6_1_9:35813053-35815141:-|nuORF ENST00000474908.5_1_9:35813053-35813759:-|nuORF ENST00000474908.5_1_9:35813053-35813759:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 397.2329711914062 3 397.567912 1189.68191 NaN NaN NaN NaN NaN NaN NaN 25.125 1 22.242 21.742 22.742 -2.8831 0 0 0 0.94046 1 13730 13730 6.1918 0 1 80231 4901 53687 54816 93404 93404 0.09465365322785146 YRLWMFYCA 9 Unmodified _YRLWMFYCA_ 0 0 0 nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.1929321289062 3 418.192912 1251.55691 0.069537 2.908E-05 -0.062654 -2.6201E-05 0.0068832 2.8785E-06 418.5270016992998 39.466 0.18675 39.466 39.321 39.508 0 15 8 2 0 0 0 0.55144 1 21147 21147 2.4985 1.2837 1 3323300 80232 10599 53688 54817 93405 93405 -0.05880966409563371 YRLWMFYCA 9 Unmodified _YRLWMFYCA_ 0 0 0 nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 418.1935729980469 3 418.192912 1251.55691 -0.012578 -5.2601E-06 0.57389 0.00023999 0.56131 0.00023473 418.19326505355804 39.708 0.28365 39.411 39.264 39.548 -0.29716 37 13 4 0 0 0 0.55144 1 20946 20946 2.4985 1.2837 1 8683100 80233 10599 53688 54817 93406 93406 -0.05880966409563371 YRLWMFYCA 9 Unmodified _YRLWMFYCA_ 0 0 0 nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 nc|ENSG00000227500|Q969E2-3|SCAMP4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 418.192912 1251.55691 -0.012578 -5.2601E-06 0.57389 0.00023999 0.56131 0.00023473 418.19326505355804 39.708 0.28365 39.411 39.264 39.548 -0.29716 -0.027633 0.00034617 NaN 2.4985 37 13 4 NaN NaN NaN NaN 0 NaN NaN 0 8683100 80234 10599 53688 54817 -0.05880966409563371 YRMGQHYEEE 10 Unmodified _YRMGQHYEEE_ 0 0 0 nc|ENSG00000183092|Q9BUH8|BEGAIN;ENSG00000183092|ENST00000554140|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN MSMS AL20221201_MKP_PDAC_01 4 447.8541259765625 3 447.855793 1340.54555 NaN NaN NaN NaN NaN NaN NaN 23.256 1 20.478 19.978 20.978 -2.7784 0 0 0 0.97556 1 12577 12577 3.3196 2.2482 1 80235 9116 53689 54818 93407 93407 -0.11110116969985029 YRMGQHYEEE 10 Unmodified _YRMGQHYEEE_ 0 0 0 nc|ENSG00000183092|Q9BUH8|BEGAIN;ENSG00000183092|ENST00000554140|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN nc|ENSG00000183092|Q9BUH8|BEGAIN MSMS AL20221201_MKP_PDAC_01 4 447.8552856445312 3 447.855793 1340.54555 NaN NaN NaN NaN NaN NaN NaN 23.438 1 20.659 20.159 21.159 -2.7784 0 0 0 0.99008 1 12687 12687 1.7423 0.41263 1 80236 9116 53689 54818 93408 93408 -0.11110116969985029 YRMIPPTSKT 10 Unmodified _YRMIPPTSKT_ 0 0 0 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 ENSG00000165379|ENST00000298119|LRFN5 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.5282287597656 3 398.549753 1192.62743 -0.4625 -0.00018433 -0.088381 -3.5224E-05 -0.55088 -0.00021955 398.5501004733886 20.859 0.16248 20.859 20.744 20.906 0 33 23 2 0 0 0 0.23926 1 10467 10467 1.5923 0.52082 1 1019500 80237 7331 53690 54819 93409 93409 0.03882030179715912 YRNAYTMVL 9 Oxidation (M) _YRNAYTM(Oxidation (M))VL_ YRNAYTM(1)VL YRNAYTM(48)VL 0 0 1 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.783935546875 2 573.784241 1145.55393 0.79177 0.0004543 -1.2989 -0.00074531 -0.50718 -0.00029101 573.7839048341464 47.07 0.37801 41.989 41.818 42.196 -5.0805 53 33 2 0 0 0 0.044011 1 29211 29211 47.749 22.349 1 18500000 80238 621 53691 54820 93410 93410 96 -0.013025182627643517 YRNAYTMVL 9 Unmodified _YRNAYTMVL_ 0 0 0 ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-2|CUL3 ENSG00000036257|ENST00000264414|CUL3 ENSG00000036257|ENST00000264414|CUL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.78662109375 2 565.786784 1129.55902 1.2317 0.00069689 -1.4709 -0.00083221 -0.23916 -0.00013532 565.7857702629093 59.304 0.40392 53.23 53.03 53.434 -6.0745 35 22 2 0 0 0 0.098164 2 38142 37997;38142 36.127 16.87 1 33524000 80239 621 53691 54821 93411;93412 93412 -0.0005821440013278334 YRNDCSLPR 9 Unmodified _YRNDCSLPR_ 0 0 0 nc|ENSG00000156983|P55201-4|BRPF1;nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 nc|ENSG00000156983|P55201-4|BRPF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.2018432617188 3 375.181952 1122.52403 0.019411 7.2826E-06 0.42412 0.00015912 0.44354 0.00016641 375.1825814044207 38.222 0.23965 37.951 37.802 38.042 -0.27133 14 10 2 0 0 0 0.209 1 20150 20150 4.5289 1.2092 1 633280 80240 6493 53692 54822 93413 93413 -0.032334572081026636 YRNHICNFFD 10 Unmodified _YRNHICNFFD_ 0 0 0 nc|ENSG00000103888|Q8WUJ3-2|CEMIP;ENSG00000103888|ENST00000394685|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP nc|ENSG00000103888|Q8WUJ3-2|CEMIP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7171936035156 3 443.532873 1327.57679 0.11763 5.2174E-05 2.4313 0.0010784 2.549 0.0011305 443.5339072881229 31.535 0.12364 31.432 31.381 31.505 -0.10269 7 4 2 0 0 0 0.23609 1 16427 16427 8.4443 2.6609 1 1147600 80241 2165 53693 54823 93414 93414 -0.0738949914530167 YRNLEMQIRYE 11 Unmodified _YRNLEMQIRYE_ 0 0 0 REV__ENSG00000066739|ENST00000359933|ATG2B REV__ENSG00000066739|ENST00000359933|ATG2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.5855407714844 3 505.585526 1513.73475 -0.38039 -0.00019232 0.85471 0.00043213 0.47432 0.00023981 505.9204667661653 38.032 0.47952 37.761 37.562 38.042 -0.27133 63 22 4 0 0 0 0.73237 1 19977 19977 1.2148 0.70888 1 5332800 + 80242 17407 53694 54824 93415 93415 -0.0015704467668911093 YRNQHEYHWR 10 Unmodified _YRNQHEYHWR_ 0 0 0 REV__nc|ENSG00000172915|Q8NFP9-2|NBEA REV__nc|ENSG00000172915|Q8NFP9-2|NBEA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 496.5684509277344 3 496.900836 1487.68068 NaN NaN NaN NaN NaN NaN NaN 19.891 1 19.891 19.391 20.391 0 0 0 0 1.0047 1 9978 9978 0.15932 0 1 + 80243 22687 53695 54825 93416 93416 -0.0436545599341116 YRNRNFYEL 9 Unmodified _YRNRNFYEL_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 425.54736328125 3 425.5474 1273.62037 0.018009 7.6636E-06 -2.1056 -0.00089605 -2.0876 -0.00088838 425.5473900262155 38.052 0.41917 37.781 37.599 38.018 -0.27133 36 19 3 0 0 0 0.44883 1 20034 20034 10.151 3.9162 1 2500300 80244 4081 53696 54826 93417 93417 -0.0054956637648047035 YRNRNFYEL 9 Unmodified _YRNRNFYEL_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5471801757812 3 425.5474 1273.62037 -0.024875 -1.0586E-05 -0.70559 -0.00030026 -0.73047 -0.00031085 425.8814045427674 37.665 0.20493 37.682 37.634 37.839 0.01704 21 9 3 0 0 0 0.44883 1 20024 20024 10.151 7.0783 1 3109100 80245 4081 53696 54826 93418 93418 -0.0054956637648047035 YRNRNFYEL 9 Unmodified _YRNRNFYEL_ 0 0 0 ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000128641|O43795-2|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF ENSG00000128641|ENST00000392318|MYO1B ENSG00000128641|ENST00000392318|MYO1B MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.5478210449219 3 425.5474 1273.62037 1.8855 0.00080238 -0.8055 -0.00034278 1.08 0.00045961 425.5471818998648 41.764 0.35892 37.157 36.952 37.311 -4.6079 50 22 3 0 0 0 0.085319 2 25052 25052;25193 36.506 26.742 1 11828000 80246 4081 53696 54826 93419;93420 93419 -0.0054956637648047035 YRNRYWKEHHF 11 Unmodified _YRNRYWKEHHF_ 0 0 0 ENSG00000162482|ENST00000361640|AKR7A3 ENSG00000162482|ENST00000361640|AKR7A3 ENSG00000162482|ENST00000361640|AKR7A3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 546.2718505859375 3 545.935769 1634.78548 0.28241 0.00015418 0.5635 0.00030763 0.84591 0.00046181 545.9354884612961 78.627 0.58569 72.451 72.308 72.894 -6.1757 53 35 2 0 0 0 0.73115 2 51434 51434;51573 0.45452 0 1 17477000 80247 6865 53697 54827 93421;93422 93421 -0.006523345168488959 YRNVIHTY 8 Unmodified _YRNVIHTY_ 0 0 0 nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB;nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB nc|ENSG00000183091|P20929-4|NEB nc|ENSG00000183091|P20929-4|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2770385742188 2 533.277441 1064.54033 0.31264 0.00016673 -1.4787 -0.00078854 -1.166 -0.00062182 533.2765340482334 96.662 0.38761 96.662 96.526 96.913 0 37 22 2 0 0 0 0.80992 1 53498 53498 0.69038 0 1 376220 80248 9115 53698 54828 93423 93423 0.01063992020317528 YRPASGARQQY 11 Unmodified _YRPASGARQQY_ 0 0 0 REV__ENSG00000128218|ENST00000248948|VPREB3 REV__ENSG00000128218|ENST00000248948|VPREB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8849792480469 3 432.886304 1295.63708 NaN NaN NaN NaN NaN NaN NaN 39.839 1 39.542 39.042 40.042 -0.29716 0 0 0 0.93694 1 21035 21035 4.7159 0.30977 1 + 80249 19602 53699 54829 93424 93424 0.0010893450946696248 YRPENHLLY 9 Unmodified _YRPENHLLY_ 0 0 0 ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF ENST00000399586.2_1_X:74960734-74966719:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.80859375 2 602.809105 1203.60366 -0.089938 -5.4215E-05 -0.31067 -0.00018728 -0.40061 -0.00024149 602.8085195071906 79.499 0.26614 79.499 79.372 79.638 0 17 10 2 0 0 0 0.59218 1 44185 44185 1.8442 0 1 349750 80250 12865 53700 54830 93425 93425 0.009999327375680878 YRPFQYDFL 9 Unmodified _YRPFQYDFL_ 0 0 0 ENST00000539966.5_1_13:99104432-99104537:-|nuORF ENST00000539966.5_1_13:99104432-99104537:-|nuORF ENST00000539966.5_1_13:99104432-99104537:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.8732299804688 3 416.873113 1247.59751 -0.51466 -0.00021455 -1.1079 -0.00046186 -1.6226 -0.00067641 416.87280391800175 33.404 0.25768 33.404 33.264 33.522 0 44 18 5 0 0 0 0.39863 1 17480 17480 8.1555 0 1 49819000 80251 15026 53701 54831 93426 93426 -0.016385854939471756 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 500.795654296875 2 500.794935 999.575317 0.54372 0.00027229 -0.45122 -0.00022597 0.0925 4.6324E-05 500.79444671994105 66.426 0.35461 66.426 66.239 66.594 0 35 15 3 0 0 0 0.60622 1 37092 37092 25.399 8.457 1 2258500 80252 918;7592;4856 53702 54832 93427 93427 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 500.7950134277344 2 500.794935 999.575317 -0.0045858 -2.2966E-06 0.39593 0.00019828 0.39135 0.00019599 500.79514348393855 66.774 0.58453 66.291 65.984 66.569 -0.48323 85 27 4 0 0 0 0.54555 2 36458 36458;36562 30.637 7.4881 1 24931000 80253 918;7592;4856 53702 54832 93428;93429 93428 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.7946472167969 2 500.794935 999.575317 1.1719 0.00058687 -0.7979 -0.00039959 0.37398 0.00018729 500.79468137410896 70.716 0.416 64.54 64.39 64.806 -6.1757 34 21 2 0 0 0 0.60622 1 46271 46271 25.399 3.6527 1 25004000 80254 918;7592;4856 53702 54832 93430 93430 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20221201_MKP_PDAC_01 4 500.7685241699219 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 73.572 1 67.397 66.897 67.897 -6.1757 0 0 0 0.51139 1 48108 48108 39.957 1.8061 1 80255 918;7592;4856 53702 54832 93431 93431 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20221201_MKP_PDAC_01 4 500.79443359375 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 73.623 1 67.447 66.947 67.947 -6.1757 0 0 0 0.4392 1 48144 48144 48.346 0 1 80256 918;7592;4856 53702 54832 93432 93432 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20221201_MKP_PDAC_01 4 500.7974853515625 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 74.483 1 68.308 67.808 68.808 -6.1757 0 0 0 0.45366 1 48695 48695 46.021 3.9264 1 80257 918;7592;4856 53702 54832 93433 93433 0.07551234828292763 YRPPELLL 8 Unmodified _YRPPELLL_ 0 0 0 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9 ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000136807|ENST00000373264|CDK9 ENSG00000065883|ENST00000181839|CDK13 MSMS AL20221201_MKP_PDAC_01 4 500.7955017089844 2 500.794935 999.575317 NaN NaN NaN NaN NaN NaN NaN 74.702 1 68.527 68.027 69.027 -6.1757 0 0 0 0.39735 1 48839 48839 54.774 10.915 1 80258 918;7592;4856 53702 54832 93434 93434 0.07551234828292763 YRPPEVIL 8 Unmodified _YRPPEVIL_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 493.7868957519531 2 493.78711 985.559667 -0.20789 -0.00010265 1.0287 0.00050794 0.82077 0.00040528 493.7875236900714 56.333 0.33166 56.333 56.093 56.424 0 26 15 2 0 0 0 0.66338 1 31278 31278 20.454 3.5113 1 3099400 80259 16419 53703 54833 93435 93435 0.06630948311226348 YRPPEVIL 8 Unmodified _YRPPEVIL_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7860412597656 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 56.626 1 56.14 55.64 56.64 -0.48554 0 0 0 0.75749 1 30757 30757 25.399 3.6527 1 80260 16419 53703 54833 93436 93436 0.06630948311226348 YRPPEVIL 8 Unmodified _YRPPEVIL_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 493.7874145507812 2 493.78711 985.559667 NaN NaN NaN NaN NaN NaN NaN 56.824 1 56.338 55.838 56.838 -0.48554 0 0 0 0.92941 1 30872 30872 14.838 3.198 1 80261 16419 53703 54833 93437 93437 0.06630948311226348 YRPPEVIL 8 Unmodified _YRPPEVIL_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 493.7880859375 2 493.78711 985.559667 0.52861 0.00026102 0.24213 0.00011956 0.77074 0.00038058 493.7872811747145 61.997 0.44624 55.822 55.537 55.984 -6.1757 39 24 2 0 0 0 0.52622 2 39889 39889;40015 32.305 3.8186 1 32409000 80262 16419 53703 54833 93438;93439 93438 0.06630948311226348 YRPPSSLAP 9 Unmodified _YRPPSSLAP_ 0 0 0 nc|ENSG00000069188|Q58EX2-3|SDK2;ENSG00000069188|ENST00000392650|SDK2;SLC39A11-SDK2|1|fusion;SLC39A11-SDK2|2|fusion;SLC39A11-SDK2|3|fusion nc|ENSG00000069188|Q58EX2-3|SDK2 nc|ENSG00000069188|Q58EX2-3|SDK2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 494.29052734375 2 494.266542 986.51853 1.1624 0.00057452 0.98785 0.00048826 2.1502 0.0010628 494.2670999785989 49.66 0.43468 49.612 49.431 49.865 -0.048824 34 21 2 0 0 0 0.17718 1 26800 26800 20.454 3.5113 1 1384000 80263 998 53704 54834 93440 93440 0.02473187271743882 YRPRPDSYHLL 11 Unmodified _YRPRPDSYHLL_ 0 0 0 nc|ENSG00000140675|P31639-2|SLC5A2;ENSG00000140675|ENST00000330498|SLC5A2 nc|ENSG00000140675|P31639-2|SLC5A2 nc|ENSG00000140675|P31639-2|SLC5A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.9186096191406 3 472.917604 1415.73098 1.0597 0.00050113 1.8015 0.00085198 2.8612 0.0013531 472.9188721279383 79.157 0.63932 72.981 72.611 73.251 -6.1757 86 35 3 0 0 0 0.29431 2 51712 51624;51712 27.088 1.091 1 21640000 80264 5262 53705 54835 93441;93442 93442 0.03974653611771828 YRPRRIKL 8 Unmodified _YRPRRIKL_ 0 0 0 REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3529663085938 2 551.353817 1100.69308 -0.57996 -0.00031977 -0.33271 -0.00018344 -0.91267 -0.00050321 551.3536101625954 102.89 0.32735 102.84 102.72 103.05 -0.047928 25 12 3 0 0 0 0.81107 1 57142 57142 0 0 1 1802700 + 80265 27172 53706 54836 93443 93443 0.14676232207580142 YRPRRIKL 8 Unmodified _YRPRRIKL_ 0 0 0 REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 551.353817 1100.69308 0.3927 0.00021651 -1.0512 -0.0005796 -0.65854 -0.00036309 551.3533003654472 102.94 0.17039 102.84 102.71 102.88 -0.10458 -0.0030389 -0.00052346 NaN 0 10 7 2 NaN NaN NaN NaN 0 NaN NaN 0 124420 + 80266 27172 53706 54836 0.14676232207580142 YRPRRIKL 8 Unmodified _YRPRRIKL_ 0 0 0 REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF REV__ENST00000448223.6_1_2:17884515-17884548:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 551.353817 1100.69308 -0.57996 -0.00031977 -0.33271 -0.00018344 -0.91267 -0.00050321 551.3536101625954 102.89 0.32735 102.84 102.72 103.05 -0.047928 0.0030389 0.00026886 NaN 0 25 12 3 NaN NaN NaN NaN 0 NaN NaN 0 1802700 + 80267 27172 53706 54836 0.14676232207580142 YRPRTQRL 8 Unmodified _YRPRTQRL_ 0 0 0 ENST00000492981.1_1_3:113465783-113465960:-|nuORF ENST00000492981.1_1_3:113465783-113465960:-|nuORF ENST00000492981.1_1_3:113465783-113465960:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.7359008789062 2 545.317432 1088.62031 NaN NaN NaN NaN NaN NaN NaN 78.877 1 78.877 78.377 79.377 0 0 0 0 0.97444 1 43822 43822 0.79363 0 1 80268 14304 53707 54837 93444 93444 0.07954478414171717 YRPSVLCEP 9 Unmodified _YRPSVLCEP_ 0 0 0 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 REV__nc|ENSG00000073712|Q96AC1-2|FERMT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.2680053710938 2 532.265684 1062.51682 0.94029 0.00050048 -0.71519 -0.00038067 0.2251 0.00011981 532.2654823912134 32.15 0.67428 28.436 28.119 28.793 -3.7148 104 38 4 0 0 0 0.14 1 18154 18154 29.082 3.6823 1 121710000 + 80269 17541 53708 54838 93445 93445 -0.011941898085069624 YRPTVVAFFH 10 Unmodified _YRPTVVAFFH_ 0 0 0 ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF ENST00000396522.6_1_14:21967741-21972178:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.8905944824219 3 412.888986 1235.64513 NaN NaN NaN NaN NaN NaN NaN 44.8 1 44.778 44.278 45.278 -0.022064 0 0 0 0.92825 1 24047 24047 3.5871 0.26742 1 80270 12798 53709 54839 93446 93446 0.036731134968931656 YRPVRQYVY 9 Unmodified _YRPVRQYVY_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 415.5588684082031 3 415.224257 1242.65094 -0.036577 -1.5188E-05 -0.036007 -1.4951E-05 -0.072585 -3.0139E-05 415.22415782311487 28.926 0.23236 28.956 28.798 29.03 0.030106 16 9 2 0 0 0 0.070838 1 15049 15049 29.841 19.041 1 5201300 80271 703 53710 54840 93447 93447 0.039322120085671486 YRPVRQYVY 9 Unmodified _YRPVRQYVY_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.2242431640625 3 415.224257 1242.65094 1.2759 0.0005298 2.1499 0.00089269 3.4258 0.0014225 415.22444181723546 32.296 0.53593 28.44 28.179 28.715 -3.8562 51 30 3 0 0 0 0.070838 1 18427 18427 36.506 21.258 1 10483000 80272 703 53710 54840 93448 93448 0.039322120085671486 YRPVRQYVY 9 Unmodified _YRPVRQYVY_ 0 0 0 nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A nc|ENSG00000048828|Q9NZB2-4|FAM120A MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3326416015625 2 622.332747 1242.65094 0.85211 0.0005303 0.51077 0.00031787 1.3629 0.00084816 622.3327584371842 32.397 0.21726 28.541 28.418 28.635 -3.8562 20 12 2 0 0 0 0.010877 1 18470 18470 77.984 29.638 1 6945400 80273 703 53710 54840 93449 93449 0.039322120085671486 YRQDESYNFE 10 Unmodified _YRQDESYNFE_ 0 0 0 nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R nc|ENSG00000159403|P00736|C1R nc|ENSG00000159403|P00736|C1R MULTI-MSMS AL20221201_MKP_PDAC_01 4 450.8584899902344 3 450.85808 1349.55241 1.0234 0.00046141 -2.3717 -0.0010693 -1.3483 -0.0006079 450.8571801570632 19.043 0.091213 16.422 16.348 16.439 -2.6215 8 5 2 0 0 0 0.71177 1 10070 10070 1.5923 0 1 1671500 80274 6653 53711 54841 93450 93450 -0.1083848081780161 YRQEMEANG 9 Unmodified _YRQEMEANG_ 0 0 0 ENSG00000077009|ENST00000168977|NMRK2;nc|ENSG00000077009|Q9NPI5-3|NMRK2 ENSG00000077009|ENST00000168977|NMRK2 ENSG00000077009|ENST00000168977|NMRK2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.4952087402344 3 366.494196 1096.46076 1.6257 0.0005958 1.2807 0.00046936 2.9063 0.0010652 366.4948104004032 34.925 0.35673 30.83 30.65 31.007 -4.0951 35 20 3 0 0 0 0.58145 1 20198 20198 2.4985 0 1 9759900 80275 1201 53712 54842 93451 93451 -0.08361442715977319 YRQKEYVA 8 Unmodified _YRQKEYVA_ 0 0 0 nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8 nc|ENSG00000133704|O15397-2|IPO8 nc|ENSG00000133704|O15397-2|IPO8 MSMS AL20221201_MKP_PDAC_01 4 352.7995300292969 3 352.853941 1055.53999 NaN NaN NaN NaN NaN NaN NaN 6.7552 1 4.2733 3.7733 4.7733 -2.482 0 0 0 0.97444 1 3412 3412 0.45834 0.18932 1 80276 4529 53713 54843 93452 93452 0.01444572300465552 YRQLEKTLF 9 Unmodified _YRQLEKTLF_ 0 0 0 REV__ENST00000535981.1_1_11:64071127-64072115:+|nuORF REV__ENST00000535981.1_1_11:64071127-64072115:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.3378295898438 2 599.334956 1196.65536 2.1239 0.0012729 0.93115 0.00055807 3.0551 0.001831 599.3354076481708 96.096 0.81897 96.1 95.865 96.684 0.004158 98 28 6 0 0 0 0.2001 1 53505 53505 23.148 1.4018 1 549860000 + 80277 24355 53714 54844 93453 93453 0.06489676431442604 YRQNQFFKI 9 Unmodified _YRQNQFFKI_ 0 0 0 REV__nc|ENSG00000119042|Q9UPW6-2|SATB2 REV__nc|ENSG00000119042|Q9UPW6-2|SATB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 415.5602111816406 3 415.224257 1242.65094 1.2759 0.0005298 2.1499 0.00089269 3.4258 0.0014225 415.22444181723546 32.296 0.53593 28.44 28.179 28.715 -3.8562 51 30 3 0 0 0 0.41742 1 18304 18304 7.609 1.7408 1 10483000 + 80278 19179 53715 54845 93454 93454 0.039322120085671486 YRQNYMGRF 9 Unmodified _YRQNYMGRF_ 0 0 0 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 REV__nc|ENSG00000040341|Q9NUL3-3|STAU2 MSMS AL20221201_MKP_PDAC_01 4 412.1969299316406 3 412.197713 1233.57131 NaN NaN NaN NaN NaN NaN NaN 17.245 1 14.659 14.159 15.159 -2.5866 0 0 0 0.81961 1 9000 9000 5.2969 2.5617 1 + 80279 29488 53716 54846 93455 93455 -0.036131779370862205 YRQQWFRRELE 11 Unmodified _YRQQWFRRELE_ 0 0 0 REV__NKX2-8|p.R104W|1|0.06|ENSG00000136327|chr14:36581312-36581312|G/A|missense_variant REV__NKX2-8|p.R104W|1|0.06|ENSG00000136327|chr14:36581312-36581312|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 805.9129638671875 2 805.912956 1609.81136 NaN NaN NaN NaN NaN NaN NaN 89.647 1 89.689 89.189 90.189 0.042175 0 0 0 0.9435 1 49869 49869 0 0 1 + 80280 30057 53717 54847 93456 93456 0.030845149348124323 YRQRLYELL 9 Unmodified _YRQRLYELL_ 0 0 0 nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000549185.5_3_14:31803609-31872202:-|nuORF nc|ENSG00000129493|Q86XA9-2|HEATR5A nc|ENSG00000129493|Q86XA9-2|HEATR5A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 418.5711059570312 3 418.571545 1252.69281 0.85913 0.00035961 -0.31896 -0.00013351 0.54017 0.0002261 418.57139126519974 46.359 0.24803 46.326 46.224 46.472 -0.033417 15 11 2 0 0 0 0.55373 1 24964 24964 4.1895 0 1 1989600 80281 4143 53718 54848 93457 93457 0.07656767697085343 YRQSSATSSF 10 Unmodified _YRQSSATSSF_ 0 0 0 ENSG00000171345|ENST00000361566|KRT19;CON__P08727 ENSG00000171345|ENST00000361566|KRT19 ENSG00000171345|ENST00000361566|KRT19 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2643432617188 2 567.264727 1132.5149 -0.10522 -5.9687E-05 1.837 0.0010421 1.7318 0.00098239 567.2651472839254 22.374 0.26215 22.374 22.224 22.486 0 19 12 2 0 0 0 0.44171 1 11340 11340 19.362 4.5237 1 771770 + 80282 167 53719 54849 93458 93458 -0.04605527292778788 YRQTKGRSL 9 Unmodified _YRQTKGRSL_ 0 0 0 nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 370.2126159667969 3 370.21224 1107.61489 -0.55726 -0.00020631 1.439 0.00053272 0.8817 0.00032642 370.21275909556937 19.019 0.090084 19.042 18.977 19.067 0.023106 9 5 2 0 0 0 0.59218 1 9576 9576 0.96228 0 1 513960 80283 7552 53720 54850 93459 93459 0.06538754831717597 YRQTKGRSL 9 Unmodified _YRQTKGRSL_ 0 0 0 nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L nc|ENSG00000166938|Q8TF46-2|DIS3L MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 370.21224 1107.61489 0.047195 1.7472E-05 0.27854 0.00010312 0.32574 0.00012059 370.21236740501433 19.062 0.091303 19.07 19.031 19.122 0.0078487 0.013968 -0.00038085 NaN 0.96228 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 459550 80284 7552 53720 54850 0.06538754831717597 YRRGHGPYI 9 Unmodified _YRRGHGPYI_ 0 0 0 REV__ENST00000470961.1_1_3:101405187-101405544:-|nuORF REV__ENST00000470961.1_1_3:101405187-101405544:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 373.5331420898438 3 373.533313 1117.57811 1.7047 0.00063675 -1.2588 -0.00047021 0.44585 0.00016654 373.53276755640957 36.061 0.48423 31.869 31.598 32.082 -4.1928 83 29 4 0 0 0 0.48152 1 20902 20902 8.7454 3.8484 1 67285000 + 80285 18911 53721 54851 93460 93460 0.024025030058055563 YRRGVGKI 8 Unmodified _YRRGVGKI_ 0 0 0 REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF REV__ENST00000496813.5_1_6:33239896-33244045:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 474.7904968261719 2 474.790518 947.566484 -0.64781 -0.00030757 0.61684 0.00029287 -0.030972 -1.4705E-05 474.7907694793627 103.39 0.096474 103.35 103.28 103.38 -0.047928 12 3 5 0 0 0 0.81107 1 57420 57420 0 0 1 36965000 + 80286 24406 53722 54852 93461 93461 0.09060305982484351 YRRHKMPA 8 Unmodified _YRRHKMPA_ 0 0 0 ENSG00000163701|ENST00000383814|IL17RE;nc|ENSG00000163701|Q8NFR9-5|IL17RE;ENST00000489181.5_1_3:9944520-9950978:+|nuORF;ENST00000383815.7_1_3:9944714-9956386:+|nuORF;nc|ENSG00000163701|Q8NFR9-3|IL17RE ENSG00000163701|ENST00000383814|IL17RE ENSG00000163701|ENST00000383814|IL17RE MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1058.073120117188 1 1058.56763 1057.56035 0.1752 0.00018546 0.73802 0.00078125 0.91322 0.0009667 1058.569950705009 59.17 0.19404 58.68 58.535 58.729 -0.49079 10 8 2 0 0 0 8.7369 1 32173 32173 0.79363 0 1 643170 80287 7053 53723 54853 93462 93462 0.033874644793058906 YRRIWYNL 8 Unmodified _YRRIWYNL_ 0 0 0 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 REV__nc|ENSG00000079102|Q06455-6|RUNX1T1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 395.8894348144531 3 395.217214 1182.62981 0.61078 0.00024139 0.58963 0.00023303 1.2004 0.00047442 395.2171598124128 27.92 0.49032 24.772 24.587 25.077 -3.1482 91 26 4 0 0 0 0.72953 1 15697 15697 10.824 0 1 142690000 + 80288 17640 53724 54854 93463 93463 0.045802466996974545 YRRLLLTKLFI 11 Unmodified _YRRLLLTKLFI_ 0 0 0 ENST00000388795.9_1_4:128886616-128922876:+|nuORF;nc|ENSG00000164074|Q0P651|ABHD18;ENSG00000164074|ENST00000645843|ABHD18 ENST00000388795.9_1_4:128886616-128922876:+|nuORF ENST00000388795.9_1_4:128886616-128922876:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 359.4830932617188 4 359.734149 1434.90749 1.677 0.00060326 -0.8129 -0.00029243 0.86406 0.00031083 359.7337179611774 81.166 0.23907 74.99 74.877 75.116 -6.1757 15 13 2 0 0 0 0.306 1 53285 53285 0.45452 0.37117 1 11410000 80289 7132 53725 54855 93464 93464 0.20743314512833422 YRRMFQQI 8 Unmodified _YRRMFQQI_ 0 0 0 ENST00000523402.5_1_8:22411983-22419017:+|nuORF;ENST00000517535.5_1_8:22411983-22423386:+|nuORF;ENSG00000120896|ENST00000240123|SORBS3 ENST00000523402.5_1_8:22411983-22419017:+|nuORF ENST00000523402.5_1_8:22411983-22419017:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 381.2032470703125 3 381.202687 1140.58623 1.7921 0.00068314 -0.22855 -8.7124E-05 1.5635 0.00059601 381.2027398073071 96.527 0.45004 90.352 90.122 90.572 -6.1757 58 26 3 0 0 0 0.72953 1 64034 64034 10.824 3.215 1 36349000 80290 3551 53726 54856 93465 93465 0.021563139309137114 YRRRLWKWWKS 11 Unmodified _YRRRLWKWWKS_ 0 0 0 ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 832.969970703125 2 832.967868 1663.92118 NaN NaN NaN NaN NaN NaN NaN 22.824 1 22.837 22.337 23.337 0.012396 0 0 0 0.9435 1 11621 11621 0 0 1 80291 13663 53727 54857 93466 93466 0.11577985064604945 YRRRLWKWWKS 11 Unmodified _YRRRLWKWWKS_ 0 0 0 ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF ENST00000461642.2_1_20:25470551-25477423:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 832.967041015625 2 832.967868 1663.92118 NaN NaN NaN NaN NaN NaN NaN 23.228 1 23.24 22.74 23.74 0.012396 0 0 0 0.9435 1 11839 11839 0 0 1 80292 13663 53727 54857 93467 93467 0.11577985064604945 YRRRRQKYLHR 11 Unmodified _YRRRRQKYLHR_ 0 0 0 REV__nc|ENSG00000074696|Q9P035-2|HACD3 REV__nc|ENSG00000074696|Q9P035-2|HACD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 816.4773559570312 2 816.476923 1630.93929 NaN NaN NaN NaN NaN NaN NaN 109.34 1 109.29 108.79 109.79 -0.047607 0 0 0 0.9435 1 60533 60533 0 0 1 + 80293 17557 53728 54858 93468 93468 0.14906120039336201 YRRRRRMKRPF 11 Unmodified _YRRRRRMKRPF_ 0 0 0 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 ENSG00000183770|ENST00000648323|FOXL2 MSMS AL20221201_MKP_PDAC_01 4 811.4776611328125 2 811.475869 1620.93718 NaN NaN NaN NaN NaN NaN NaN 61.486 1 55.338 54.838 55.838 -6.1478 0 0 0 0.94301 1 39607 39607 0.35063 0.35063 1 80294 9192 53729 54859 93469 93469 0.15155368029877536 YRRSIGKI 8 Unmodified _YRRSIGKI_ 0 0 0 ENST00000449303.2_1_1:116971885-116975822:-|nuORF ENST00000449303.2_1_1:116971885-116975822:-|nuORF ENST00000449303.2_1_1:116971885-116975822:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.8037719726562 2 496.803626 991.592698 -0.47349 -0.00023523 0.93446 0.00046424 0.46097 0.00022901 496.80399382186175 103.44 0.090714 103.39 103.34 103.43 -0.047928 8 3 3 0 0 0 0.81107 1 57451 57451 0 0 1 37694000 80295 13500 53730 54860 93470 93470 0.09656575153951508 YRRSQRMV 8 Unmodified _YRRSQRMV_ 0 0 0 REV__nc|ENSG00000258289|Q8WUH1-3|CHURC1 REV__nc|ENSG00000258289|Q8WUH1-3|CHURC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.8669128417969 3 365.866187 1094.57673 0.80608 0.00029492 0.073215 2.6787E-05 0.87929 0.0003217 365.86629007526744 12.277 0.74052 9.7952 9.62 10.361 -2.482 914 286 4 0 0 0 0.80383 1 6121 6121 2.9952 2.9952 1 162530000 + 80296 29986 53731 54861 93471 93471 0.03322545645391983 YRRSWQWELRL 11 Unmodified _YRRSWQWELRL_ 0 0 0 ENST00000321680.10_1_6:147527107-147527200:+|nuORF ENST00000321680.10_1_6:147527107-147527200:+|nuORF ENST00000321680.10_1_6:147527107-147527200:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 531.6221923828125 3 531.61967 1591.83718 NaN NaN NaN NaN NaN NaN NaN 21.513 1 18.778 18.278 19.278 -2.7348 0 0 0 0.94209 1 11529 11529 1.0136 0.60531 1 80297 11773 53732 54862 93472 93472 0.0649340917709651 YRRVKELY 8 Unmodified _YRRVKELY_ 0 0 0 nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4 nc|ENSG00000112319|O95677-5|EYA4 nc|ENSG00000112319|O95677-5|EYA4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 376.2171630859375 3 376.217102 1125.62948 0.67972 0.00025572 0.36017 0.0001355 1.0399 0.00039123 376.2172113163885 23.548 0.35107 20.721 20.493 20.844 -2.8273 53 20 4 0 0 0 0.70102 2 12653 12653;12761 17.113 0 1 9493600 80298 2884 53733 54863 93473;93474 93473 0.0716882697984147 YRRVKELY 8 Unmodified _YRRVKELY_ 0 0 0 nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000112319|O95677-2|EYA4;nc|ENSG00000112319|O95677-4|EYA4;ENSG00000112319|ENST00000355286|EYA4 nc|ENSG00000112319|O95677-5|EYA4 nc|ENSG00000112319|O95677-5|EYA4 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 376.217102 1125.62948 0.09387 3.5315E-05 0.94181 0.00035432 1.0357 0.00038964 376.21752139944334 20.327 0.080036 20.338 20.308 20.388 0.010551 -0.19153 0.00053025 NaN 17.113 8 4 2 NaN NaN NaN NaN 0 NaN NaN 0 400000 80299 2884 53733 54863 0.0716882697984147 YRRWMIRKRMR 11 Unmodified _YRRWMIRKRMR_ 0 0 0 ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM ENSG00000066279|ENST00000367409|ASPM MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 826.4666137695312 2 826.466655 1650.91876 NaN NaN NaN NaN NaN NaN NaN 87.922 1 87.418 86.918 87.918 -0.50423 0 0 0 0.9435 1 48091 48091 0 0 1 80300 932 53734 54864 93475 93475 0.11933490063620411 YRRYADLFVQW 11 Unmodified _YRRYADLFVQW_ 0 0 0 REV__ENSG00000162341|ENST00000294309|TPCN2 REV__ENSG00000162341|ENST00000294309|TPCN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2635498046875 3 506.261371 1515.76228 NaN NaN NaN NaN NaN NaN NaN 20.068 1 20.096 19.596 20.596 0.028357 0 0 0 0.94209 1 10147 10147 1.0136 0.55906 1 + 80301 21633 53735 54865 93476 93476 0.02503226645808354 YRRYIRMYRFY 11 Unmodified _YRRYIRMYRFY_ 0 0 0 REV__ENSG00000179397|ENST00000366534|CATSPERE REV__ENSG00000179397|ENST00000366534|CATSPERE MSMS AL20221201_MKP_PDAC_01 4 843.9400634765625 2 843.937919 1685.86129 NaN NaN NaN NaN NaN NaN NaN 98.748 1 92.572 92.072 93.072 -6.1757 0 0 0 0.9435 1 65548 65548 0 0 1 + 80302 23096 53736 54866 93477 93477 0.045789263390815904 YRRYRIWKRRR 11 Unmodified _YRRYRIWKRRR_ 0 0 0 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 855.006103515625 2 855.00839 1708.00223 NaN NaN NaN NaN NaN NaN NaN 89.464 1 89.512 89.012 90.012 0.047852 0 0 0 0.9435 1 49769 49769 0 0 1 + 80303 24224 53737 54867 93478 93478 0.1765468582734684 YRSDDTSQED 10 Unmodified _YRSDDTSQED_ 0 0 0 REV__nc|ENSG00000115355|Q3V6T2-2|CCDC88A REV__nc|ENSG00000115355|Q3V6T2-2|CCDC88A MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.8316650390625 3 405.83019 1214.46874 0.88058 0.00035737 -0.21033 -8.5358E-05 0.67025 0.00027201 405.830036812614 41.526 0.49873 36.918 36.703 37.202 -4.6079 67 32 3 0 0 0 0.69064 1 25096 25096 1.9064 0 1 22073000 + 80304 18974 53738 54868 93479 93479 -0.1299163698549819 YRSELLSF 8 Unmodified _YRSELLSF_ 0 0 0 nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8;ENST00000523206.5_1_8:95850795-95884149:+|nuORF nc|ENSG00000164941|Q75QN2-2|INTS8 nc|ENSG00000164941|Q75QN2-2|INTS8 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.3063659667969 2 507.766374 1013.5182 -0.54579 -0.00027713 1.0623 0.00053941 0.51654 0.00026228 507.7671076698434 76.873 0.35108 76.393 76.276 76.627 -0.47945 18 15 2 0 0 0 8.7369 1 42112 42112 1.8442 0 1 395120 80305 7269 53739 54869 93480 93480 0.011977675519119657 YRSFNYNE 8 Unmodified _YRSFNYNE_ 0 0 0 ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR ENSG00000135577|ENST00000258042|NMBR MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.2698364257812 2 546.740888 1091.46722 0.7456 0.00040765 -4.0004 -0.0021872 -3.2548 -0.0017795 546.738028723546 52.595 0.18258 52.536 52.486 52.669 -0.058918 14 8 2 0 0 0 8.7369 1 28550 28550 8.5933 1.304 1 1605600 80306 4722 53740 54870 93481 93481 -0.07485181492961601 YRSFRTYA 8 Unmodified _YRSFRTYA_ 0 0 0 REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF REV__ENST00000417037.6_2_3:38183656-38183971:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.2696533203125 2 532.269616 1062.52468 NaN NaN NaN NaN NaN NaN NaN 28.552 1 28.581 28.081 29.081 0.029564 0 0 0 0.96606 1 14868 14868 7.2892 0 1 + 80307 26787 53741 54871 93482 93482 -0.004082944967194635 YRSGMASWNV 10 Unmodified _YRSGMASWNV_ 0 0 0 REV__ENST00000510515.5_1_4:77936087-77936168:+|nuORF REV__ENST00000510515.5_1_4:77936087-77936168:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 390.8509216308594 3 390.850202 1169.52878 NaN NaN NaN NaN NaN NaN NaN 31.342 1 27.646 27.146 28.146 -3.6958 0 0 0 0.59691 1 17742 17742 14.218 2.7003 1 + 80308 28146 53742 54872 93483 93483 -0.04920573065328426 YRSIDCFH 8 Unmodified _YRSIDCFH_ 0 0 0 REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 520.7354125976562 2 520.734551 1039.45455 0.56934 0.00029647 1.1684 0.00060842 1.7377 0.0009049 520.7351459265843 82.12 0.37918 81.624 81.415 81.794 -0.4952 43 14 4 0 0 0 0.80232 1 44946 44946 5.2307 0 1 2899600 + 80309 25948 53743 54873 93484 93484 -0.06359916156839063 YRSIDCFH 8 Unmodified _YRSIDCFH_ 0 0 0 REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF REV__ENST00000361972.8_1_10:7203714-7204119:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 520.734551 1039.45455 0.56934 0.00029647 1.1684 0.00060842 1.7377 0.0009049 520.7351459265843 82.12 0.37918 81.624 81.415 81.794 -0.4952 0 0 NaN 5.2307 43 14 4 NaN NaN NaN NaN 0 NaN NaN 0 2899600 + 80310 25948 53743 54873 -0.06359916156839063 YRSIWVLLSP 10 Unmodified _YRSIWVLLSP_ 0 0 0 REV__ENST00000603037.2_2_X:73422686-73423058:-|nuORF REV__ENST00000603037.2_2_X:73422686-73423058:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 411.9051208496094 3 411.904524 1232.69174 NaN NaN NaN NaN NaN NaN NaN 14.567 1 12.064 11.564 12.564 -2.5029 0 0 0 0.95966 1 7407 7407 5.0475 0 1 + 80311 29271 53744 54874 93485 93485 0.08470553328174901 YRSLYGVE 8 Unmodified _YRSLYGVE_ 0 0 0 ENSG00000166152|ENST00000299191|C16orf78 ENSG00000166152|ENST00000299191|C16orf78 ENSG00000166152|ENST00000299191|C16orf78 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 493.7508544921875 2 493.750724 985.486896 NaN NaN NaN NaN NaN NaN NaN 29.377 1 29.407 28.907 29.907 0.030106 0 0 0 0.80403 1 15326 15326 23.148 0 1 80312 7439 53745 54875 93486 93486 -0.006428054821981277 YRSNFAEL 8 Unmodified _YRSNFAEL_ 0 0 0 REV__ENSG00000152818|ENST00000367545|UTRN REV__ENSG00000152818|ENST00000367545|UTRN MULTI-MSMS AL20221201_MKP_PDAC_01 4 500.2504577636719 2 500.248349 998.482145 1.2633 0.00063195 1.1834 0.00059198 2.4466 0.0012239 500.2486462340114 50.174 0.64343 44.635 44.408 45.051 -5.5391 61 41 3 0 0 0 0.71527 1 31572 31572 15.847 1.2655 1 17562000 + 80313 21139 53746 54876 93487 93487 -0.017156896249616693 YRSSPSTS 8 Unmodified _YRSSPSTS_ 0 0 0 REV__ENSG00000076053|ENST00000375490|RBM7 REV__ENSG00000076053|ENST00000375490|RBM7 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.235595703125 2 442.709057 883.40356 -0.29106 -0.00012885 -1.7114 -0.00075766 -2.0025 -0.00088652 442.70824767442326 32.873 0.23769 32.714 32.596 32.833 -0.15919 13 9 2 0 0 0 8.7369 1 17156 17156 3.9444 0 1 808800 + 80314 17582 53747 54877 93488 93488 -0.04280541930029358 YRSTTACWL 9 Unmodified _YRSTTACWL_ 0 0 0 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 REV__nc|ENSG00000153246|Q13018-2|PLA2R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7632446289062 2 550.763309 1099.51206 NaN NaN NaN NaN NaN NaN NaN 90.456 1 89.961 89.461 90.461 -0.49457 0 0 0 0.82739 1 49444 49444 4.3292 0 1 + 80315 21164 53748 54878 93489 93489 -0.03371073951279868 YRSYSFRKL 9 Unmodified _YRSYSFRKL_ 0 0 0 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 REV__nc|ENSG00000135655|Q9Y4E8-2|USP15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.225341796875 3 407.224257 1218.65094 -0.08143 -3.316E-05 2.6807 0.0010916 2.5993 0.0010585 407.2250761580996 22.083 0.070745 22.096 22.063 22.134 0.013796 4 2 2 0 0 0 0.53557 1 11352 11352 5.2969 3.2109 1 497130 + 80316 20086 53749 54879 93490 93490 0.050362120085537754 YRSYWVLW 8 Unmodified _YRSYWVLW_ 0 0 0 REV__ENST00000510052.5_1_5:10227736-10249985:-|nuORF REV__ENST00000510052.5_1_5:10227736-10249985:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 586.7984008789062 2 586.798009 1171.58147 NaN NaN NaN NaN NaN NaN NaN 92.513 1 86.338 85.838 86.838 -6.1757 0 0 0 0.88449 1 61185 61185 19.257 2.1441 1 + 80317 21036 53750 54880 93491 93491 0.0025375305979196128 YRTANSEHF 9 Unmodified _YRTANSEHF_ 0 0 0 ENSG00000124227|ENST00000457363|ANKRD60 ENSG00000124227|ENST00000457363|ANKRD60 ENSG00000124227|ENST00000457363|ANKRD60 MSMS AL20221201_MKP_PDAC_01 4 375.51123046875 3 375.508834 1123.50467 NaN NaN NaN NaN NaN NaN NaN 51.147 1 45.498 44.998 45.998 -5.649 0 0 0 0.29524 1 32162 32162 18.373 0 1 80318 3768 53751 54881 93492 93492 -0.052140902273322354 YRTDPQERG 9 Unmodified _YRTDPQERG_ 0 0 0 REV__ENSG00000175029|ENST00000309035|CTBP2 REV__ENSG00000175029|ENST00000309035|CTBP2 MSMS AL20221201_MKP_PDAC_01 4 374.5148620605469 3 374.515988 1120.52613 NaN NaN NaN NaN NaN NaN NaN 46.642 1 41.562 41.062 42.062 -5.0805 0 0 0 0.53226 1 28857 28857 10.151 2.5416 1 + 80319 22832 53752 54882 93493 93493 -0.029307051986279475 YRTELNYY 8 Unmodified _YRTELNYY_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.5140686035156 3 374.513585 1120.51892 -0.44607 -0.00016706 0.18385 6.8853E-05 -0.26222 -9.8206E-05 374.5139556490055 35.847 0.67122 35.624 35.201 35.873 -0.2224 61 30 3 0 0 0 0.74163 1 18889 18889 10.074 2.465 1 7224200 + 80320 22295 53753 54883 93494 93494 -0.03651437799044288 YRTELNYY 8 Unmodified _YRTELNYY_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.5138854980469 3 374.513585 1120.51892 NaN NaN NaN NaN NaN NaN NaN 38.743 1 38.755 38.255 39.255 0.011452 0 0 0 0.93587 1 20615 20615 10.074 2.465 1 + 80321 22295 53753 54883 93495 93495 -0.03651437799044288 YRTELNYY 8 Unmodified _YRTELNYY_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MSMS AL20221201_MKP_PDAC_01 4 374.5147705078125 3 374.513585 1120.51892 NaN NaN NaN NaN NaN NaN NaN 46.438 1 41.358 40.858 41.858 -5.0805 0 0 0 0.88073 1 28680 28680 14.838 0 1 + 80322 22295 53753 54883 93496 93496 -0.03651437799044288 YRTEMMRL 8 Unmodified _YRTEMMRL_ 0 0 0 REV__nc|ENSG00000100503|Q8N4C6-4|NIN REV__nc|ENSG00000100503|Q8N4C6-4|NIN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.2731323242188 2 550.272986 1098.53142 NaN NaN NaN NaN NaN NaN NaN 81.343 1 81.343 80.843 81.843 0 0 0 0 0.97444 1 45148 45148 2.5775 0.27475 1 + 80323 18075 53754 54884 93497 93497 -0.01390440932027559 YRTGYPYR 8 Unmodified _YRTGYPYR_ 0 0 0 nc|ENSG00000087274|P35611-5|ADD1;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENSG00000087274|ENST00000683351|ADD1 nc|ENSG00000087274|P35611-5|ADD1 nc|ENSG00000087274|P35611-5|ADD1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 359.1820373535156 3 359.182169 1074.52468 1.8779 0.00067449 -0.61604 -0.00022127 1.2618 0.00045322 359.18168665243996 33.518 0.40648 29.533 29.487 29.894 -3.9853 35 22 2 0 0 0 0.79669 1 19241 19241 6.2058 2.2614 1 15871000 80324 1464 53755 54885 93498 93498 -0.009602944967355143 YRTGYTYR 8 Unmodified _YRTGYTYR_ 0 0 0 nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2;nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2 nc|ENSG00000075340|P35612-2|ADD2 nc|ENSG00000075340|P35612-2|ADD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.26708984375 2 540.267073 1078.51959 0.24205 0.00013077 -0.8607 -0.00046501 -0.61865 -0.00033423 540.2665219542314 96.812 0.25558 96.812 96.675 96.931 0 21 14 2 0 0 0 0.81007 1 53484 53484 0.6015 0 1 356720 80325 1152 53756 54886 93499 93499 -0.01652598359351032 YRTKTVYT 8 Unmodified _YRTKTVYT_ 0 0 0 REV__nc|ENSG00000166321|Q86X67-4|NUDT13 REV__nc|ENSG00000166321|Q86X67-4|NUDT13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2801513671875 2 516.279649 1030.54475 -0.51717 -0.000267 0.17185 8.8724E-05 -0.34532 -0.00017828 516.2797447406429 35.833 0.37907 35.611 35.393 35.772 -0.2224 38 16 3 0 0 0 0.36356 1 18727 18727 48.346 0.59716 1 11313000 + 80326 22103 53757 54887 93500 93500 0.03069456443222407 YRTKYKEF 8 Unmodified _YRTKYKEF_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8702087402344 3 378.869591 1133.58694 -0.056036 -2.123E-05 1.5658 0.00059324 1.5098 0.00057201 378.8702303932399 32.173 0.30971 32.044 31.866 32.176 -0.12915 27 11 3 0 0 0 0.74687 1 16740 16740 13.042 4.2971 1 2735600 + 80327 23320 53758 54888 93501 93501 0.025494318515939085 YRTKYKEF 8 Unmodified _YRTKYKEF_ 0 0 0 REV__nc|ENSG00000183091|P20929-3|NEB REV__nc|ENSG00000183091|P20929-3|NEB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 378.869591 1133.58694 -0.21268 -8.0578E-05 3.6555 0.0013849 3.4428 0.0013044 378.8704428042457 32.062 0.12012 32.092 31.988 32.108 0.029819 0.024187 0.0022416 NaN 13.042 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 517340 + 80328 23320 53758 54888 0.025494318515939085 YRTPASLNI 9 Unmodified _YRTPASLNI_ 0 0 0 REV__ENSG00000138792|ENST00000265162|ENPEP REV__ENSG00000138792|ENST00000265162|ENPEP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 518.2222900390625 2 517.785099 1033.55564 1.754 0.0009082 0.92763 0.00048031 2.6816 0.0013885 517.7862955506553 41.742 0.28077 37.134 36.969 37.25 -4.6079 20 17 2 0 0 0 0.15672 1 25178 25178 14.838 7.549 1 5519600 + 80329 20368 53759 54889 93502 93502 0.040208588175119075 YRTQAPSYL 9 Unmodified _YRTQAPSYL_ 0 0 0 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 ENSG00000166266|ENST00000393094|CUL5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.780517578125 2 549.782556 1097.55056 0.90394 0.00049697 -4.0942 -0.0022509 -3.1903 -0.001754 549.778833799923 49.603 0.37168 49.554 49.412 49.784 -0.048824 38 18 3 0 0 0 0.30562 1 26829 26829 16.942 1.0951 1 1880100 80330 7461 53760 54890 93503 93503 0.005685549548843483 YRTQASDDKE 10 Unmodified _YRTQASDDKE_ 0 0 0 REV__nc|ENSG00000121481|Q99496-2|RNF2 REV__nc|ENSG00000121481|Q99496-2|RNF2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.52294921875 3 404.854558 1211.54184 0.22321 9.0366E-05 0.42746 0.00017306 0.65067 0.00026343 404.85493091570027 43.341 0.17526 43.03 42.93 43.105 -0.31039 17 8 3 0 0 0 0.65471 1 23068 23068 7.9454 0.46833 1 12352000 + 80331 19295 53761 54891 93504 93504 -0.05546463472273899 YRTQPLSIL 9 Unmodified _YRTQPLSIL_ 0 0 0 REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF REV__ENST00000485101.5_1_3:186506527-186506686:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 364.2141723632812 3 364.213358 1089.61824 1.7271 0.00062904 -0.50589 -0.00018425 1.2212 0.00044479 364.2131238869529 35.74 0.47132 31.547 31.269 31.741 -4.1928 73 29 3 0 0 0 0.41742 1 20868 20868 7.609 0.50723 1 32550000 + 80332 27772 53762 54892 93505 93505 0.07702004885709357 YRTRPEDI 8 Unmodified _YRTRPEDI_ 0 0 0 ENST00000372522.5_1_1:43272970-43273018:-|nuORF ENST00000372522.5_1_1:43272970-43273018:-|nuORF ENST00000372522.5_1_1:43272970-43273018:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2468872070312 2 525.272355 1048.53016 -0.047711 -2.5061E-05 -2.6361 -0.0013847 -2.6838 -0.0014097 525.7722637506317 29.573 0.19405 29.573 29.508 29.702 0 21 13 2 0 0 0 8.7369 1 15360 15360 13.508 1.8676 1 2990900 80333 12383 53763 54893 93506 93506 0.007833842950731196 YRTSRFIGG 9 Unmodified _YRTSRFIGG_ 0 0 0 REV__nc|ENSG00000011451|O95785-2|WIZ REV__nc|ENSG00000011451|O95785-2|WIZ MULTI-SECPEP AL20221201_MKP_PDAC_01 4 352.8479919433594 3 352.857686 1055.55123 1.1906 0.00042012 0.96147 0.00033926 2.1521 0.00075938 352.8580604350271 32.936 0.27545 29.08 28.854 29.129 -3.8562 28 15 2 0 0 0 0.20207 1 18851 18851 11.495 4.2055 1 17464000 + 80334 17058 53764 54894 93507 93507 0.02567394394600342 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7153930664062 2 443.716882 885.41921 -0.2345 -0.00010405 -1.8656 -0.00082778 -2.1001 -0.00093183 443.71577270891436 19.49 0.23452 19.49 19.372 19.607 0 65 28 3 0 0 0 0.70294 1 9752 9752 16.942 0 1 4694600 + 80335 27253 53765 54895 93508 93508 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7157897949219 2 443.716882 885.41921 -0.1679 -7.4501E-05 1.2363 0.00054855 1.0684 0.00047405 443.71606096871346 24.771 0.30627 24.771 24.65 24.956 0 25 19 2 0 0 0 0.70294 1 12684 12684 16.942 3.4344 1 1436500 + 80336 27253 53765 54895 93509 93509 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 443.7159423828125 2 443.716882 885.41921 NaN NaN NaN NaN NaN NaN NaN 24.382 1 24.382 23.882 24.882 0 0 0 0 0.9192 1 12460 12460 16.942 3.4344 1 + 80337 27253 53765 54895 93510 93510 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7149353027344 2 443.716882 885.41921 0.15762 6.9941E-05 -0.64271 -0.00028518 -0.48509 -0.00021524 443.7165119214029 31.4 0.6358 31.297 31.013 31.649 -0.10269 39 25 2 0 0 0 0.70294 2 16209 16209;16314 16.942 3.4344 1 2877200 + 80338 27253 53765 54895 93511;93512 93511 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7167663574219 2 443.716882 885.41921 -0.26921 -0.00011945 -0.22613 -0.00010034 -0.49533 -0.00021979 443.71576812467237 32.77 0.57287 32.61 32.214 32.787 -0.15918 37 24 2 0 0 0 0.70294 2 17116 17001;17116 16.942 0.52583 1 1850700 + 80339 27253 53765 54895 93513;93514 93514 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7155456542969 2 443.716882 885.41921 -0.30285 -0.00013438 -1.568 -0.00069576 -1.8709 -0.00083015 443.71619335149603 33.578 0.40932 33.419 33.144 33.553 -0.15918 31 16 3 0 0 0 0.76266 1 17436 17436 11.64 0.52583 1 1781400 + 80340 27253 53765 54895 93515 93515 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 443.7162780761719 2 443.716882 885.41921 -0.3066 -0.00013605 -1.5472 -0.0006865 -1.8538 -0.00082254 443.7159943697334 33.824 0.57589 33.662 33.528 34.104 -0.16152 40 22 2 0 0 0 0.76266 1 17769 17769 11.64 0.52583 1 1504200 + 80341 27253 53765 54895 93516 93516 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.716064453125 2 443.716882 885.41921 0.19057 8.4558E-05 -1.201 -0.00053291 -1.0105 -0.00044835 443.7155580461084 30.741 0.85144 30.771 30.233 31.084 0.030106 48 37 2 0 0 0 0.76266 1 16030 16030 11.64 0 1 1321900 + 80342 27253 53765 54895 93517 93517 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 443.716882 885.41921 0.15762 6.9941E-05 -0.64271 -0.00028518 -0.48509 -0.00021524 443.7165119214029 31.4 0.6358 31.297 31.013 31.649 -0.10269 0 0 NaN 16.942 39 25 2 NaN NaN NaN NaN 0 NaN NaN 0 2877200 + 80343 27253 53765 54895 -0.02808255413003735 YRTTTASS 8 Unmodified _YRTTTASS_ 0 0 0 REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF REV__ENST00000456416.5_3_10:43932588-43971259:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 443.716882 885.41921 0.42391 0.0001881 -1.7802 -0.00078992 -1.3563 -0.00060182 443.71615768263024 19.696 0.2791 19.704 19.561 19.84 0.0078506 0.065829 0.00050624 NaN 16.942 23 13 4 NaN NaN NaN NaN 0 NaN NaN 0 1282300 + 80344 27253 53765 54895 -0.02808255413003735 YRTTVEQQL 9 Unmodified _YRTTVEQQL_ 0 0 0 REV__ENST00000392319.6_1_12:133634344-133634431:+|nuORF REV__ENST00000392319.6_1_12:133634344-133634431:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.2992553710938 2 569.29857 1136.58259 0.11256 6.4078E-05 -0.50466 -0.0002873 -0.39211 -0.00022323 569.2980965818435 40.361 0.19489 40.361 40.276 40.471 0 15 9 2 0 0 0 0.1773 1 21687 21687 25.399 0.72543 1 3412700 + 80345 26388 53766 54896 93518 93518 0.01975922638052907 YRTTWEIGF 9 Unmodified _YRTTWEIGF_ 0 0 0 ENST00000398881.3_1_6:41755478-41756977:+|nuORF ENST00000398881.3_1_6:41755478-41756977:+|nuORF ENST00000398881.3_1_6:41755478-41756977:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.791259765625 2 586.790381 1171.56621 1.0684 0.00062694 0.63087 0.00037019 1.6993 0.00099713 586.7907804171828 71.456 0.74127 71.495 71.13 71.871 0.039024 70 33 3 0 0 0 0.34999 1 39289 39289 14.838 1.7958 1 7964000 80346 12859 53767 54897 93519 93519 -0.012711585280840154 YRTVIFSAMF 10 Unmodified _YRTVIFSAMF_ 0 0 0 ENST00000526626.6_1_11:118898577-118900094:-|nuORF;ENST00000532085.1_1_11:118899923-118900094:-|nuORF;ENST00000532888.6_1_11:118899072-118900094:-|nuORF;ENST00000529510.5_1_11:118897799-118900094:-|nuORF;ENST00000525787.1_1_11:118898858-118900094:-|nuORF;ENST00000525102.5_1_11:118898396-118900094:-|nuORF;nc|ENSG00000137700|O43826|SLC37A4;ENSG00000137700|ENST00000330775|SLC37A4;nc|ENSG00000137700|O43826-2|SLC37A4 ENST00000526626.6_1_11:118898577-118900094:-|nuORF ENST00000526626.6_1_11:118898577-118900094:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 412.2149047851562 3 412.214482 1233.62162 NaN NaN NaN NaN NaN NaN NaN 15.35 1 15.356 14.856 15.856 0.0057774 0 0 0 0.96981 1 7646 7646 1.9064 0 1 80347 4960 53768 54898 93520 93520 0.014149316680459378 YRTWGRVTD 9 Unmodified _YRTWGRVTD_ 0 0 0 REV__ENST00000578337.1_1_17:73126785-73126953:-|nuORF REV__ENST00000578337.1_1_17:73126785-73126953:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 384.8426818847656 3 385.196478 1152.56761 -0.47027 -0.00018115 0.56798 0.00021878 0.097711 3.7638E-05 385.19665443482404 25.336 0.18388 25.336 25.202 25.386 0 18 8 3 0 0 0 0.19891 1 12997 12997 7.609 3.0801 1 1762000 + 80348 29040 53769 54899 93521 93521 -0.0025752443928013236 YRTWNPFRS 9 Unmodified _YRTWNPFRS_ 0 0 0 ENSG00000188573|ENST00000338333|FBLL1 ENSG00000188573|ENST00000338333|FBLL1 ENSG00000188573|ENST00000338333|FBLL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.5400390625 3 409.540357 1225.59924 -0.48609 -0.00019907 0.51432 0.00021063 0.028225 1.1559E-05 409.5406718933017 24.982 0.39969 24.982 24.802 25.202 0 111 36 4 0 0 0 0.6149 1 12911 12911 0.20686 0.047535 1 7527700 80349 9671 53770 54900 93522 93522 -0.004535316853434779 YRVFKRWRAV 10 Unmodified _YRVFKRWRAV_ 0 0 0 ENSG00000183654|ENST00000332432|MARCHF11;nc|ENSG00000183654|A6NNE9-2|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 ENSG00000183654|ENST00000332432|MARCHF11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 690.9044799804688 2 690.904205 1379.79386 NaN NaN NaN NaN NaN NaN NaN 15.734 1 15.74 15.24 16.24 0.0057774 0 0 0 1.0061 1 7855 7855 0 0 1 80350 9173 53771 54901 93523 93523 0.11915264190452035 YRVGPRFA 8 Unmodified _YRVGPRFA_ 0 0 0 REV__ENSG00000145623|ENST00000274276|OSMR REV__ENSG00000145623|ENST00000274276|OSMR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 483.2710876464844 2 483.269419 964.524284 0.17696 8.5519E-05 0.99596 0.00048132 1.1729 0.00056684 483.2699386124821 34.735 0.18803 34.762 34.668 34.856 0.027401 14 8 2 0 0 0 0.3408 1 18309 18309 50.855 14.811 1 4496200 + 80351 20782 53772 54902 93524 93524 0.040603305740773976 YRVGPRFA 8 Unmodified _YRVGPRFA_ 0 0 0 REV__ENSG00000145623|ENST00000274276|OSMR REV__ENSG00000145623|ENST00000274276|OSMR MULTI-MSMS AL20221201_MKP_PDAC_01 4 483.2708435058594 2 483.269419 964.524284 0.94073 0.00045462 1.8637 0.00090069 2.8045 0.0013553 483.2699326904515 39.088 0.27589 34.637 34.506 34.782 -4.4509 21 17 2 0 0 0 0.42423 1 23144 23144 42.095 13.608 1 13896000 + 80352 20782 53772 54902 93525 93525 0.040603305740773976 YRVPATQQNL 10 Unmodified _YRVPATQQNL_ 0 0 0 REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D REV__nc|ENSG00000111291|Q9NZD1-2|GPRC5D MULTI-MSMS AL20221201_MKP_PDAC_01 4 398.5412902832031 3 397.21565 1188.62512 1.2518 0.00049723 -0.71817 -0.00028527 0.53362 0.00021196 397.21551348851347 34.175 0.35611 30.19 29.984 30.34 -3.9853 55 19 4 0 0 0 0.67413 1 19749 19749 5.7834 5.7834 1 30211000 + 80353 18746 53773 54903 93526 93526 0.038353177662884264 YRVQHLSSF 9 Unmodified _YRVQHLSSF_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7962036132812 2 568.795998 1135.57744 0.90224 0.00051319 -0.65899 -0.00037483 0.24326 0.00013836 568.7955318842696 81.536 0.23402 81.042 80.93 81.164 -0.49431 13 9 2 0 0 0 0.5029 2 44658 44636;44658 7.2892 1.0834 1 332990 + 80354 20189 53774 54904 93527;93528 93528 0.015076635660989268 YRVQHLSSF 9 Unmodified _YRVQHLSSF_ 0 0 0 REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.5865478515625 2 568.795998 1135.57744 0.90224 0.00051319 -0.65899 -0.00037483 0.24326 0.00013836 568.7955318842696 81.536 0.23402 81.042 80.93 81.164 -0.49431 13 9 2 0 0 0 0.21834 1 44636 44636 1.8442 0 1 332990 + 80355 20189 53774 54904 93529 93529 0.015076635660989268 YRVVCFSLYF 10 Unmodified _YRVVCFSLYF_ 0 0 0 ENST00000558059.5_1_15:101827046-101835071:-|nuORF;ENST00000558036.5_1_15:101827046-101835383:-|nuORF ENST00000558059.5_1_15:101827046-101835071:-|nuORF ENST00000558059.5_1_15:101827046-101835071:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.8850708007812 3 432.886365 1295.63727 NaN NaN NaN NaN NaN NaN NaN 47.684 1 47.684 47.184 48.184 0 0 0 0 0.9997 1 26117 26117 0.69767 0 1 80356 15272 53775 54905 93530 93530 0.0012721818509362492 YRWKRRRSYSR 11 Unmodified _YRWKRRRSYSR_ 0 0 0 nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3;nc|ENSG00000179335|P49761-2|CLK3;ENST00000454830.6_1_15:74908152-74912599:+|nuORF nc|ENSG00000179335|P49761-3|CLK3 nc|ENSG00000179335|P49761-3|CLK3 MSMS AL20221201_MKP_PDAC_01 4 807.4467163085938 2 807.447831 1612.88111 NaN NaN NaN NaN NaN NaN NaN 36.616 1 32.332 31.832 32.832 -4.2835 0 0 0 0.9435 1 21397 21397 0 0 1 80357 16419 53776 54906 93531 93531 0.09918438394061013 YRWLWWQPWWW 11 Unmodified _YRWLWWQPWWW_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.5032958984375 2 896.93042 1791.84629 NaN NaN NaN NaN NaN NaN NaN 32.773 1 32.614 32.114 33.114 -0.15918 0 0 0 0.9435 1 17076 17076 0 0 1 80358 76;75 53777 54907 93532 93532 -0.017961974666150127 YRWLWWQPWWW 11 Unmodified _YRWLWWQPWWW_ 0 0 0 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1;chr12:54282820-54283827|179|15.08|0.0|20.52|+|1|HNRNPA1,HNRNPA1|1 chr12:54282823-54283827|179|21.85|0.0|21.06|+|1|HNRNPA1,HNRNPA1|1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 896.7850341796875 2 896.93042 1791.84629 NaN NaN NaN NaN NaN NaN NaN 36.773 1 36.523 36.023 37.023 -0.2497 0 0 0 0.9435 1 19306 19306 0 0 1 80359 76;75 53777 54907 93533 93533 -0.017961974666150127 YRWMSPNQR 9 Unmodified _YRWMSPNQR_ 0 0 0 ENST00000421817.5_1_2:182412449-182414421:-|nuORF;nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL ENST00000421817.5_1_2:182412449-182414421:-|nuORF ENST00000421817.5_1_2:182412449-182414421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2986450195312 2 619.298381 1236.58221 0.49045 0.00030374 -0.55469 -0.00034352 -0.064241 -3.9784E-05 619.2978515860034 62.899 1.8068 62.413 61.511 63.318 -0.48617 131 85 3 0 0 0 0.40476 4 34388 33885;34100;34245;34388 12.241 4.0862 1 5367400 80360 9660 53778 54908 93534;93535;93536;93537 93537 -0.026617755628194573 YRWMSPNQR 9 Unmodified _YRWMSPNQR_ 0 0 0 ENST00000421817.5_1_2:182412449-182414421:-|nuORF;nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL ENST00000421817.5_1_2:182412449-182414421:-|nuORF ENST00000421817.5_1_2:182412449-182414421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 619.2980346679688 2 619.298381 1236.58221 0.66261 0.00041035 0.85748 0.00053104 1.5201 0.00094139 619.2992104970024 64.069 0.6922 63.584 63.432 64.125 -0.48512 41 33 2 0 0 0 0.56345 1 35102 35102 3.5965 0.31518 1 1064800 80361 9660 53778 54908 93538 93538 -0.026617755628194573 YRWMSPNQR 9 Unmodified _YRWMSPNQR_ 0 0 0 ENST00000421817.5_1_2:182412449-182414421:-|nuORF;nc|ENSG00000188452|Q49MI3-5|CERKL;nc|ENSG00000188452|Q49MI3-4|CERKL;nc|ENSG00000188452|Q49MI3-3|CERKL;nc|ENSG00000188452|Q49MI3-9|CERKL;ENSG00000188452|ENST00000410087|CERKL;nc|ENSG00000188452|Q49MI3|CERKL ENST00000421817.5_1_2:182412449-182414421:-|nuORF ENST00000421817.5_1_2:182412449-182414421:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 619.298381 1236.58221 0.52542 0.00032539 -0.87873 -0.0005442 -0.35331 -0.0002188 619.2979169094743 62.164 0.27475 62.131 61.906 62.181 -0.032787 -0.14098 -0.00026162 NaN 12.241 24 13 2 NaN NaN NaN NaN 0 NaN NaN 0 4458600 80362 9660 53778 54908 -0.026617755628194573 YRWRWPQSWRC 11 Unmodified _YRWRWPQSWRC_ 0 0 0 REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF REV__ENST00000380009.8_1_5:94890875-94891094:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 812.391357421875 2 812.391136 1622.76772 NaN NaN NaN NaN NaN NaN NaN 64.26 1 64.25 63.75 64.75 -0.010529 0 0 0 0.9435 1 35178 35178 0 0 1 + 80363 26303 53779 54909 93539 93539 -0.018753730433445526 YRYCWIILY 9 Unmodified _YRYCWIILY_ 0 0 0 ENSG00000165181|ENST00000682961|SHOC1;nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 ENSG00000165181|ENST00000682961|SHOC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 646.8299560546875 2 646.828452 1291.64235 NaN NaN NaN NaN NaN NaN NaN 63.207 1 63.207 62.707 63.707 0 0 0 0 0.85737 1 35258 35258 0.6015 0.076735 1 80364 7304 53780 54910 93540 93540 0.008195220477318799 YRYDFKFERHF 11 Unmodified _YRYDFKFERHF_ 0 0 0 REV__ENST00000311331.11_1_17:16527390-16527531:-|nuORF REV__ENST00000311331.11_1_17:16527390-16527531:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 804.3914184570312 2 804.391325 1606.7681 NaN NaN NaN NaN NaN NaN NaN 70.728 1 64.552 64.052 65.052 -6.1757 0 0 0 0.94301 1 46227 46227 0.35063 0 1 + 80365 25426 53781 54911 93541 93541 -0.011016748425390688 YRYDRVLF 8 Unmodified _YRYDRVLF_ 0 0 0 ENSG00000172426|ENST00000372163|RSPH9;nc|ENSG00000172426|Q9H1X1-2|RSPH9 ENSG00000172426|ENST00000372163|RSPH9 ENSG00000172426|ENST00000372163|RSPH9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 377.8687133789062 3 377.869703 1130.58728 NaN NaN NaN NaN NaN NaN NaN 24.907 1 24.907 24.407 25.407 0 0 0 0 0.97444 1 12744 12744 0.45834 0 1 80366 8216 53782 54912 93542 93542 0.027208515714619352 YRYHRFEVA 9 Unmodified _YRYHRFEVA_ 0 0 0 REV__nc|ENSG00000249242|B9EJG8-2|TMEM150C REV__nc|ENSG00000249242|B9EJG8-2|TMEM150C MSMS AL20221201_MKP_PDAC_01 4 414.2117614746094 3 414.21224 1239.61489 NaN NaN NaN NaN NaN NaN NaN 18.815 1 16.194 15.694 16.694 -2.6215 0 0 0 0.83049 1 9931 9931 2.2828 0.5405 1 + 80367 24494 53783 54913 93543 93543 0.004667548317002002 YRYKNSRLI 9 Unmodified _YRYKNSRLI_ 0 0 0 ENST00000520568.1_1_8:89198619-89339435:-|nuORF ENST00000520568.1_1_8:89198619-89339435:-|nuORF ENST00000520568.1_1_8:89198619-89339435:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8987731933594 3 404.899773 1211.67749 NaN NaN NaN NaN NaN NaN NaN 28.477 1 28.506 28.006 29.006 0.029564 0 0 0 0.82396 1 14828 14828 2.7352 0 1 80368 14730 53784 54914 93544 93544 0.08011900899896318 YRYLGFRPAT 10 Unmodified _YRYLGFRPAT_ 0 0 0 REV__ENSG00000133116|ENST00000380099|KL REV__ENSG00000133116|ENST00000380099|KL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.3319091796875 2 622.332747 1242.65094 NaN NaN NaN NaN NaN NaN NaN 28.917 1 28.947 28.447 29.447 0.030106 0 0 0 0.71157 1 15071 15071 16.149 0.30192 1 + 80369 19910 53785 54915 93545 93545 0.039322120085671486 YRYPPLRAFT 10 Unmodified _YRYPPLRAFT_ 0 0 0 REV__ENSG00000006116|ENST00000005284|CACNG3 REV__ENSG00000006116|ENST00000005284|CACNG3 MSMS AL20221201_MKP_PDAC_01 4 642.4052124023438 2 642.348397 1282.68224 NaN NaN NaN NaN NaN NaN NaN 104.15 1 97.977 97.477 98.477 -6.1757 0 0 0 0.99248 1 69770 69770 1.4819 0 1 + 80370 16983 53786 54916 93546 93546 0.05220785042638454 YRYREEDSN 9 Unmodified _YRYREEDSN_ 0 0 0 REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF REV__ENST00000513008.5_1_4:54292015-54325613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 411.1838684082031 3 411.182786 1230.52653 1.2399 0.00050983 0.73204 0.000301 1.972 0.00081084 411.183109359353 42.669 0.49732 37.985 37.779 38.277 -4.6846 85 32 3 0 0 0 0.54444 1 25940 25940 2.7352 0.82882 1 63403000 + 80371 20760 53787 54917 93547 93547 -0.07951330269406753 YRYTATLRM 9 Unmodified _YRYTATLRM_ 0 0 0 REV__ENSG00000124479|ENST00000642620|NDP REV__ENSG00000124479|ENST00000642620|NDP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 587.802734375 2 587.805508 1173.59646 1.0298 0.00060532 -3.3575 -0.0019735 -2.3277 -0.0013682 587.804163782376 19.872 0.2557 17.216 17.149 17.404 -2.6564 22 14 2 0 0 0 0.21709 1 10542 10542 3.2813 0.28607 1 1518700 + 80372 19448 53788 54918 93548 93548 0.016608768654577943 YRYTCRTLF 9 Unmodified _YRYTCRTLF_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 408.2060241699219 3 408.206098 1221.59646 0.22721 9.2747E-05 -0.82194 -0.00033552 -0.59473 -0.00024277 408.2057247723736 25.152 0.27884 25.135 24.975 25.254 -0.017006 20 11 2 0 0 0 0.4887 1 12847 12847 8.1555 1.0538 1 12431000 80373 9210 53789 54919 93549 93549 -0.005471231345381966 YRYTCRTLF 9 Unmodified _YRYTCRTLF_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 408.5398254394531 3 408.206098 1221.59646 0.57774 0.00023584 -0.91728 -0.00037444 -0.33954 -0.0001386 408.2059199012601 27.516 0.4574 24.48 24.259 24.717 -3.0365 68 22 4 0 0 0 0.34134 1 15170 15170 15.248 3.0737 1 78449000 80374 9210 53789 54919 93550 93550 -0.005471231345381966 YRYTCRTLF 9 Unmodified _YRYTCRTLF_ 0 0 0 ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 ENSG00000183914|ENST00000572933|DNAH2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 408.206098 1221.59646 0.22721 9.2747E-05 -0.82194 -0.00033552 -0.59473 -0.00024277 408.2057247723736 25.152 0.27884 25.135 24.975 25.254 -0.017006 0 0 NaN 8.1555 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 12431000 80375 9210 53789 54919 -0.005471231345381966 YRYWRHSP 8 Unmodified _YRYWRHSP_ 0 0 0 nc|ENSG00000146453|Q8NA58|PNLDC1;ENSG00000146453|ENST00000392167|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 nc|ENSG00000146453|Q8NA58|PNLDC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.7893676757812 2 582.788507 1163.56246 NaN NaN NaN NaN NaN NaN NaN 19.877 1 19.906 19.406 20.406 0.028357 0 0 0 0.97444 1 10044 10044 0.69038 0.088878 1 80376 5781 53790 54920 93551 93551 -0.012777835112729008 YRYYEYNHDLF 11 Unmodified _YRYYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 791.8489379882812 2 791.851698 1581.68884 NaN NaN NaN NaN NaN NaN NaN 91.39 1 90.896 90.396 91.396 -0.49457 0 0 0 0.9435 1 49954 49954 0 0 1 80377 6145 53791 54921 93552 93552 -0.07873366587318742 YSAAQQAAY 9 Unmodified _YSAAQQAAY_ 0 0 0 REV__ENSG00000239306|ENST00000310137|RBM14 REV__ENSG00000239306|ENST00000310137|RBM14 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.725830078125 2 486.724707 971.43486 -0.27343 -0.00013308 0.71819 0.00034956 0.44476 0.00021648 486.7251397024343 29.033 0.17892 29.033 28.923 29.102 0 12 8 2 0 0 0 0.1773 1 15033 15033 25.399 3.6527 1 965210 + 80378 24437 53792 54922 93553 93553 -0.05199968895965412 YSAAQQAAY 9 Unmodified _YSAAQQAAY_ 0 0 0 REV__ENSG00000239306|ENST00000310137|RBM14 REV__ENSG00000239306|ENST00000310137|RBM14 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 486.724707 971.43486 -0.27343 -0.00013308 0.71819 0.00034956 0.44476 0.00021648 486.7251397024343 29.033 0.17892 29.033 28.923 29.102 0 0 0 NaN 25.399 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 965210 + 80379 24437 53792 54922 -0.05199968895965412 YSADDKNLT 9 Unmodified _YSADDKNLT_ 0 0 0 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 REV__nc|ENSG00000138686|Q8IWZ6-2|BBS7 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 513.2343139648438 2 513.740554 1025.46655 1.4249 0.00073204 -3.7827 -0.0019433 -2.3578 -0.0012113 514.2410529473038 62.474 0.58374 56.299 56.002 56.586 -6.1757 93 30 4 0 0 0 0.18882 1 40474 40474 10.824 0 1 164560000 + 80380 20355 53793 54923 93554 93554 -0.045160209326922995 YSAEYCSI 8 Unmodified _YSAEYCSI_ 0 0 0 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 REV__nc|ENSG00000170525|Q16875-3|PFKFB3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.1941223144531 2 468.194393 934.374234 NaN NaN NaN NaN NaN NaN NaN 73.477 1 73.477 72.977 73.977 0 0 0 0 0.97444 1 40908 40908 0.79363 0 1 + 80381 22489 53794 54924 93555 93555 -0.09557822270551242 YSAFLPDGC 9 Unmodified _YSAFLPDGC_ 0 0 0 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 ENSG00000082516|ENST00000285873|GEMIN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 972.41259765625 1 972.413145 971.405868 0.54169 0.00052675 -1.2442 -0.0012098 -0.70248 -0.0006831 972.4121139231412 73.368 0.563 73.368 73.005 73.568 0 53 28 2 0 0 0 0.49272 1 40678 40678 7.9102 1.5561 1 2970000 80382 1348 53795 54925 93556 93556 -0.08097829516600541 YSAGEILLQ 9 Unmodified _YSAGEILLQ_ 0 0 0 nc|ENSG00000147223|Q0D2K3-2|RIPPLY1;ENSG00000147223|ENST00000276173|RIPPLY1 nc|ENSG00000147223|Q0D2K3-2|RIPPLY1 nc|ENSG00000147223|Q0D2K3-2|RIPPLY1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 497.2672119140625 2 497.266207 992.517862 0.87503 0.00043512 -0.3418 -0.00016997 0.53324 0.00026516 497.2661062932691 39.095 1.0052 34.644 34.068 35.073 -4.4509 176 63 5 0 0 0 0.08691 1 23152 23152 36.127 10.728 1 336570000 80383 5835 53796 54926 93557 93557 0.02130347832053303 YSAGNQYGY 9 Unmodified _YSAGNQYGY_ 0 0 0 REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 511.7135620117188 2 511.714339 1021.41412 NaN NaN NaN NaN NaN NaN NaN 43.809 1 43.809 43.309 44.309 0 0 0 0 0.23581 1 23817 23817 28.487 1.6032 1 + 80384 23132 53797 54927 93558 93558 -0.09572559275625281 YSAILEKLE 9 Unmodified _YSAILEKLE_ 0 0 0 ENST00000497660.5_1_1:8390216-8404070:+|nuORF;ENSG00000162426|ENST00000471889|SLC45A1 ENST00000497660.5_1_1:8390216-8404070:+|nuORF ENST00000497660.5_1_1:8390216-8404070:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 533.2921752929688 2 533.294965 1064.57538 0.19582 0.00010443 -1.6396 -0.00087437 -1.4437 -0.00076994 533.2939573770037 45.497 0.28467 45.497 45.379 45.664 0 32 15 3 0 0 0 0.18144 1 24784 24784 24.991 6.8446 1 21613000 80385 6859 53798 54928 93559 93559 0.04567190037596447 YSALGRTMPL 10 Unmodified _YSALGRTMPL_ 0 0 0 REV__ENST00000379270.4_1_X:23803462-23803531:+|nuORF REV__ENST00000379270.4_1_X:23803462-23803531:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7932739257812 2 554.794609 1107.57467 0.21127 0.00011721 2.288 0.0012694 2.4993 0.0013866 554.7960074630031 56.436 0.36841 56.367 56.23 56.598 -0.068741 47 18 3 0 0 0 0.42143 1 30770 30770 20.415 2.2682 1 15834000 + 80386 26279 53799 54929 93560 93560 0.025180721169135722 YSAMTKDALF 10 Unmodified _YSAMTKDALF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7783203125 2 573.778625 1145.5427 0.67116 0.0003851 0.088915 5.1018E-05 0.76007 0.00043611 573.7788995594813 79.111 0.27024 78.625 78.529 78.799 -0.48596 23 11 3 0 0 0 0.6606 1 43341 43341 7.2892 1.0834 1 777850 80387 9717 53800 54930 93561 93561 -0.024253403568991416 YSAMTKDALF 10 Unmodified _YSAMTKDALF_ 0 0 0 nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 nc|ENSG00000188994|O60281-2|ZNF292 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.7792358398438 2 573.778625 1145.5427 NaN NaN NaN NaN NaN NaN NaN 78.175 1 77.693 77.193 78.193 -0.4826 0 0 0 0.91523 1 42816 42816 7.2892 0.56607 1 80388 9717 53800 54930 93562 93562 -0.024253403568991416 YSAPTKVV 8 Unmodified _YSAPTKVV_ 0 0 0 REV__ENST00000453068.1_1_7:91764257-91764353:+|nuORF REV__ENST00000453068.1_1_7:91764257-91764353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 864.4818725585938 1 864.482545 863.475269 -0.27763 -0.00024001 0.33379 0.00028856 0.05616 4.855E-05 864.4829579095586 71.328 0.29961 71.328 71.142 71.442 0 24 15 2 0 0 0 0.80232 2 39773 39698;39773 5.2307 0 1 992100 + 80389 27227 53801 54931 93563;93564 93564 0.038069974944733076 YSAPTKVVE 9 Unmodified _YSAPTKVVE_ 0 0 0 REV__ENST00000453068.1_1_7:91764257-91764353:+|nuORF REV__ENST00000453068.1_1_7:91764257-91764353:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2669067382812 2 497.266207 992.517862 0.17752 8.8275E-05 1.0563 0.00052529 1.2339 0.00061356 497.26666055724206 34.713 0.4352 34.741 34.561 34.996 0.027401 65 19 5 0 0 0 0.25681 1 18368 18368 19.257 0 1 125720000 + 80390 27227 53802 54932 93565 93565 0.02130347832053303 YSASFTTPTK 10 Unmodified _YSASFTTPTK_ 0 0 0 nc|ENSG00000089101|Q8NHU2-4|CFAP61;ENSG00000089101|ENST00000245957|CFAP61;nc|ENSG00000089101|Q8NHU2-6|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 nc|ENSG00000089101|Q8NHU2-4|CFAP61 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.1851501464844 3 368.185356 1101.53424 NaN NaN NaN NaN NaN NaN NaN 2.3431 1 2.3431 1.8431 2.8431 0 0 0 0 1.0061 1 1136 1136 0 0 1 80391 1515 53803 54933 93566 93566 -0.012465710018886966 YSASLQPVVD 10 Unmodified _YSASLQPVVD_ 0 0 0 ENSG00000161509|ENST00000293190|GRIN2C;ENST00000584176.1_1_17:72843434-72846906:-|nuORF ENSG00000161509|ENST00000293190|GRIN2C ENSG00000161509|ENST00000293190|GRIN2C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.2702026367188 2 539.774396 1077.53424 0.24502 0.00013226 -0.14718 -7.9444E-05 0.097842 5.2813E-05 539.7742616909768 93.528 0.37534 93.528 93.336 93.711 0 50 20 3 0 0 0 0.69377 1 51788 51788 3.5965 0 1 3040900 80392 6792 53804 54934 93567 93567 -0.001425710018565951 YSASPLCL 8 Unmodified _YSASPLCL_ 0 0 0 nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 nc|ENSG00000205213|Q9BXB1-2|LGR4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.7649536132812 2 427.209847 852.40514 0.27692 0.0001183 -0.24009 -0.00010257 0.036833 1.5735E-05 427.21003981770644 66.856 0.22951 66.372 66.294 66.524 -0.48323 14 10 2 0 0 0 8.7369 1 36567 36567 2.8892 0 1 446450 80393 10352 53805 54935 93568 93568 -0.026966241656623424 YSCAEYHSH 9 Unmodified _YSCAEYHSH_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7117919921875 2 548.711273 1095.40799 0.014896 8.1738E-06 0.83211 0.00045659 0.84701 0.00046476 548.7116932799129 60.261 0.29894 59.77 59.607 59.906 -0.49079 24 14 2 0 0 0 0.49272 1 32776 32776 7.9102 1.5561 1 12537000 + 80394 24651 53806 54936 93569 93569 -0.13589400778801064 YSCAEYHSH 9 Unmodified _YSCAEYHSH_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 548.711273 1095.40799 0.55989 0.00030722 -0.82254 -0.00045134 -0.26265 -0.00014412 548.7112459397665 59.649 0.3072 59.649 59.489 59.796 0 -0.060358 -0.0015879 NaN 7.9102 26 13 2 NaN NaN NaN NaN 0 NaN NaN 0 5923600 + 80395 24651 53806 54936 -0.13589400778801064 YSCAEYHSH 9 Unmodified _YSCAEYHSH_ 0 0 0 REV__ENSG00000275395|ENST00000616721|FCGBP REV__ENSG00000275395|ENST00000616721|FCGBP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 548.711273 1095.40799 0.014896 8.1738E-06 0.83211 0.00045659 0.84701 0.00046476 548.7116932799129 60.261 0.29894 59.77 59.607 59.906 -0.49079 0.060358 0.00022799 NaN 7.9102 24 14 2 NaN NaN NaN NaN 0 NaN NaN 0 12537000 + 80396 24651 53806 54936 -0.13589400778801064 YSCCCLAVLY 10 Unmodified _YSCCCLAVLY_ 0 0 0 ENST00000522683.5_1_8:96044305-96046283:+|nuORF ENST00000522683.5_1_8:96044305-96046283:+|nuORF ENST00000522683.5_1_8:96044305-96046283:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.7144775390625 2 569.242506 1136.47046 0.50026 0.00028477 -0.75757 -0.00043124 -0.25731 -0.00014647 569.242139929917 54.914 0.21735 54.914 54.812 55.029 0 15 9 2 0 0 0 0.2342 1 30480 30480 3.9444 0 1 1667200 80397 14759 53807 54937 93570 93570 -0.09231714026464033 YSCETKYWE 9 Unmodified _YSCETKYWE_ 0 0 0 ENST00000389341.9_1_19:42592278-42592560:-|nuORF ENST00000389341.9_1_19:42592278-42592560:-|nuORF ENST00000389341.9_1_19:42592278-42592560:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 403.8392944335938 3 403.502468 1207.48558 NaN NaN NaN NaN NaN NaN NaN 78.436 1 77.95 77.45 78.45 -0.48596 0 0 0 0.85737 1 42960 42960 0.26902 0.1097 1 80398 12643 53808 54938 93571 93571 -0.10986807633253193 YSCFYNLEN 9 Unmodified _YSCFYNLEN_ 0 0 0 ENST00000531483.1_1_8:38124642-38124711:-|nuORF ENST00000531483.1_1_8:38124642-38124711:-|nuORF ENST00000531483.1_1_8:38124642-38124711:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 384.8284301757812 3 384.827063 1151.45936 NaN NaN NaN NaN NaN NaN NaN 81.842 1 75.666 75.166 76.166 -6.1757 0 0 0 0.82283 1 53738 53738 4.897 0 1 80399 14906 53809 54939 93572 93572 -0.11031076804715667 YSDDLDYYY 9 Unmodified _YSDDLDYYY_ 0 0 0 REV__nc|ENSG00000131149|Q14687-2|GSE1 REV__nc|ENSG00000131149|Q14687-2|GSE1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.2852172851562 2 608.737677 1215.4608 0.42611 0.00025939 0.63189 0.00038465 1.058 0.00064404 608.7380081126913 79.05 0.24622 78.564 78.461 78.708 -0.48596 11 10 2 0 0 0 0.21798 1 43297 43297 2.3027 0.24298 1 435840 + 80400 19778 53810 54940 93573 93573 -0.13831164234989046 YSDEEMEPDY 10 Unmodified _YSDEEMEPDY_ 0 0 0 REV__nc|ENSG00000288674|P49810-2|PSEN2 REV__nc|ENSG00000288674|P49810-2|PSEN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 639.2300415039062 2 639.229358 1276.44416 0.27057 0.00017296 0.61973 0.00039615 0.8903 0.00056911 639.2296922231429 60.929 0.30235 60.929 60.743 61.045 0 14 12 2 0 0 0 0.71123 1 33984 33984 1.6526 0 1 584560 + 80401 20672 53811 54941 93574 93574 -0.18300033183254527 YSDEEMEPDY 10 Unmodified _YSDEEMEPDY_ 0 0 0 REV__nc|ENSG00000288674|P49810-2|PSEN2 REV__nc|ENSG00000288674|P49810-2|PSEN2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 639.229358 1276.44416 0.27057 0.00017296 0.61973 0.00039615 0.8903 0.00056911 639.2296922231429 60.929 0.30235 60.929 60.743 61.045 0 -0.097778 -0.000663 NaN 1.6526 14 12 2 NaN NaN NaN NaN 0 NaN NaN 0 584560 + 80402 20672 53811 54941 -0.18300033183254527 YSDEEMEPDY 10 Unmodified _YSDEEMEPDY_ 0 0 0 REV__nc|ENSG00000288674|P49810-2|PSEN2 REV__nc|ENSG00000288674|P49810-2|PSEN2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 639.229358 1276.44416 -0.17687 -0.00011306 2.4606 0.0015729 2.2838 0.0014599 639.7322280232867 61.612 0.14956 61.125 61.032 61.182 -0.48764 0.097778 0.0016905 NaN 1.6526 8 6 2 NaN NaN NaN NaN 0 NaN NaN 0 836150 + 80403 20672 53811 54941 -0.18300033183254527 YSDFDDRL 8 Unmodified _YSDFDDRL_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 516.7232666015625 2 515.727446 1029.44034 -0.60054 -0.00030972 0.3236 0.00016689 -0.27694 -0.00014283 515.7293900885749 30.357 0.52969 30.357 30.057 30.587 0 91 25 4 0 0 0 0.74163 1 15823 15823 13.508 0 1 25320000 + 80404 23757 53812 54942 93575 93575 -0.07320290104144078 YSDIWAQTA 9 Unmodified _YSDIWAQTA_ 0 0 0 REV__ENST00000466701.1_1_3:49507805-49530351:+|nuORF REV__ENST00000466701.1_1_3:49507805-49530351:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 352.1665954589844 3 352.166185 1053.47673 1.1777 0.00041476 -0.38854 -0.00013683 0.78919 0.00027792 352.1659392558583 27.334 0.41496 24.297 24.059 24.474 -3.0365 49 20 3 0 0 0 0.18144 2 15064 15064;15173 20.581 3.4727 1 89382000 + 80405 27415 53813 54943 93576;93577 93576 -0.04787413207418467 YSDIWAQTA 9 Unmodified _YSDIWAQTA_ 0 0 0 REV__ENST00000466701.1_1_3:49507805-49530351:+|nuORF REV__ENST00000466701.1_1_3:49507805-49530351:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 3 352.166185 1053.47673 1.1777 0.00041476 -0.38854 -0.00013683 0.78919 0.00027792 352.1659392558583 27.334 0.41496 24.297 24.059 24.474 -3.0365 0.028475 -0.00011785 NaN 18.721 49 20 3 NaN NaN NaN NaN 0 NaN NaN 0 89382000 + 80406 27415 53813 54943 -0.04787413207418467 YSDLKRCF 8 Unmodified _YSDLKRCF_ 0 0 0 nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3 nc|ENSG00000152520|Q58A45-2|PAN3 nc|ENSG00000152520|Q58A45-2|PAN3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2760620117188 2 516.252577 1030.4906 0.61445 0.00031721 4.0157 0.0020731 4.6302 0.0023903 516.2546657700258 73.315 0.36639 72.839 72.63 72.996 -0.47588 29 16 2 0 0 0 8.7369 1 40025 40025 9.3474 1.4373 1 2021400 80407 6194 53814 54944 93578 93578 -0.023424589800015383 YSDMDDTME 9 Unmodified _YSDMDDTME_ 0 0 0 REV__ENSG00000166840|ENST00000532726|GLYATL1 REV__ENSG00000166840|ENST00000532726|GLYATL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 553.7958984375 2 553.686272 1105.35799 0.63794 0.00035322 -1.4531 -0.00080456 -0.81515 -0.00045134 553.6857218549001 67.578 0.42538 67.578 67.317 67.743 0 68 19 6 0 0 0 0.20727 1 37624 37624 7.9102 5.6074 1 5627100 + 80408 22157 53815 54945 93579 93579 -0.19047316289606897 YSDSDDDSE 9 Unmodified _YSDSDDDSE_ 0 0 0 nc|ENSG00000132970|Q9UPY6-2|WASF3;ENSG00000132970|ENST00000335327|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 nc|ENSG00000132970|Q9UPY6-2|WASF3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.6674194335938 2 516.667448 1031.32034 NaN NaN NaN NaN NaN NaN NaN 3.2669 1 3.1948 2.6948 3.6948 -0.072029 0 0 0 0.8622 1 1608 1608 0 0 1 80409 4474 53816 54946 93580 93580 -0.1940636795923183 YSEALLKF 8 Unmodified _YSEALLKF_ 0 0 0 REV__ENST00000338513.1_1_1:35220669-35222948:+|nuORF REV__ENST00000338513.1_1_1:35220669-35222948:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 485.7654724121094 2 485.765843 969.517133 NaN NaN NaN NaN NaN NaN NaN 67.166 1 66.684 66.184 67.184 -0.48218 0 0 0 0.93587 1 36691 36691 13.508 0.97634 1 + 80410 25673 53817 54947 93581 93581 0.031155531829995198 YSEFPQLIGP 10 Unmodified _YSEFPQLIGP_ 0 0 0 REV__ENSG00000137501|ENST00000359152|SYTL2 REV__ENSG00000137501|ENST00000359152|SYTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.1962585449219 3 384.197485 1149.57063 0.58062 0.00022307 -1.1054 -0.00042469 -0.52478 -0.00020162 384.19716973962454 14.705 0.13415 12.203 12.144 12.278 -2.5029 39 21 2 0 0 0 0.50944 1 7477 7477 9.544 5.1378 1 5351900 + 80411 20246 53818 54948 93582 93582 0.0018230589485028759 YSEGEEDSPL 10 Unmodified _YSEGEEDSPL_ 0 0 0 REV__ENSG00000181195|ENST00000451791|PENK REV__ENSG00000181195|ENST00000451791|PENK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2327270507812 2 563.232758 1124.45096 0.61485 0.0003463 0.33535 0.00018888 0.95019 0.00053518 563.2326640564079 90.425 0.36012 89.93 89.758 90.118 -0.49458 39 16 3 0 0 0 0.62068 1 49465 49465 10.074 0 1 3340100 + 80412 23194 53819 54949 93583 93583 -0.1062835224038281 YSENQFAIL 9 Unmodified _YSENQFAIL_ 0 0 0 REV__ENST00000246868.6_1_7:66452970-66453129:-|nuORF REV__ENST00000246868.6_1_7:66452970-66453129:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.2598266601562 2 542.769114 1083.52368 0.46113 0.00025029 2.0092 0.0010905 2.4703 0.0013408 542.7699251519421 90.08 0.33556 90.122 89.966 90.302 0.042175 30 11 4 0 0 0 0.39863 1 50074 50074 12.532 0.89125 1 12141000 + 80413 24868 53820 54950 93584 93584 -0.014745536562713824 YSEPQLAGAL 10 Unmodified _YSEPQLAGAL_ 0 0 0 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 REV__nc|ENSG00000240771|Q86VW2-3|ARHGEF25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.77099609375 2 524.769114 1047.52368 0.72936 0.00038275 -1.0428 -0.00054721 -0.31339 -0.00016446 525.2687609918412 80.979 0.41319 80.487 80.126 80.539 -0.49247 29 17 2 0 0 0 0.67459 1 44264 44264 5.7319 0.50118 1 962740 + 80414 29966 53821 54951 93585 93585 0.0018144634370855783 YSETLYRL 8 Unmodified _YSETLYRL_ 0 0 0 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 REV__nc|ENSG00000196586|Q9UM54-6|MYO6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.7719116210938 2 522.771657 1043.52876 0.44022 0.00023013 0.52506 0.00027449 0.96527 0.00050462 522.7716264485183 90.597 0.31874 90.597 90.47 90.788 0 30 14 3 0 0 0 0.77907 1 50128 50128 10.183 0.83596 1 971520 + 80415 23849 53822 54952 93586 93586 0.008737502063240754 YSEWRKTN 8 Unmodified _YSEWRKTN_ 0 0 0 nc|ENSG00000099785|Q9P0N8-2|MARCHF2;ENSG00000099785|ENST00000215555|MARCHF2 nc|ENSG00000099785|Q9P0N8-2|MARCHF2 nc|ENSG00000099785|Q9P0N8-2|MARCHF2 MSMS AL20221201_MKP_PDAC_01 4 361.8455200195312 3 361.845446 1082.51451 NaN NaN NaN NaN NaN NaN NaN 25.009 1 22.126 21.626 22.626 -2.8831 0 0 0 0.97444 1 13653 13653 3.2813 0.78282 1 80416 1705 53823 54953 93587 93587 -0.02344902221943812 YSEYPKEVH 9 Unmodified _YSEYPKEVH_ 0 0 0 REV__ENSG00000151502|ENST00000281187|VPS26B REV__ENSG00000151502|ENST00000281187|VPS26B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 384.5177001953125 3 384.517106 1150.52949 NaN NaN NaN NaN NaN NaN NaN 15.247 1 15.233 14.733 15.733 -0.014067 0 0 0 0.85798 1 7475 7475 0.23584 0 1 + 80417 21072 53824 54954 93588 93588 -0.03975455144609441 YSFDDWDWQ 9 Unmodified _YSFDDWDWQ_ 0 0 0 ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14 ENSG00000121101|ENST00000349033|TEX14 ENSG00000121101|ENST00000349033|TEX14 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.2425537109375 2 631.24346 1260.47237 NaN NaN NaN NaN NaN NaN NaN 70.412 1 70.412 69.912 70.912 0 0 0 0 0.85359 1 39233 39233 0.52476 0.52476 1 80418 3567 53825 54955 93589 93589 -0.1474492242098222 YSFDPLRQF 9 Unmodified _YSFDPLRQF_ 0 0 0 REV__ENSG00000116497|ENST00000373475|S100PBP REV__ENSG00000116497|ENST00000373475|S100PBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.791259765625 2 586.790381 1171.56621 1.0684 0.00062694 0.63087 0.00037019 1.6993 0.00099713 586.7907804171828 71.456 0.74127 71.495 71.13 71.871 0.039024 70 33 3 0 0 0 0.1773 1 39391 39391 25.399 10.561 1 7964000 + 80419 19043 53826 54956 93590 93590 -0.012711585280840154 YSFDPLRQF 9 Unmodified _YSFDPLRQF_ 0 0 0 REV__ENSG00000116497|ENST00000373475|S100PBP REV__ENSG00000116497|ENST00000373475|S100PBP MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 586.790381 1171.56621 0.49113 0.00028819 -0.34835 -0.00020441 0.14278 8.3779E-05 586.7900324458647 72.061 0.24583 71.585 71.441 71.686 -0.47609 0.045091 -0.00091134 NaN 25.399 17 9 2 NaN NaN NaN NaN 0 NaN NaN 0 801200 + 80420 19043 53826 54956 -0.012711585280840154 YSFECTDGSSF 11 Unmodified _YSFECTDGSSF_ 0 0 0 ENST00000508541.1_1_4:20618510-20620629:+|nuORF;nc|ENSG00000145147|O94813-3|SLIT2;nc|ENSG00000145147|O94813-2|SLIT2;ENSG00000145147|ENST00000504154|SLIT2 ENST00000508541.1_1_4:20618510-20620629:+|nuORF ENST00000508541.1_1_4:20618510-20620629:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7337646484375 2 621.734611 1241.45467 0.33862 0.00021053 -0.59089 -0.00036738 -0.25228 -0.00015685 621.7341074861321 67.097 0.65919 66.614 66.254 66.913 -0.48323 87 30 3 0 0 0 0.63851 2 36674 36674;36777 9.3831 2.66 1 5227800 80421 5670 53827 54957 93591;93592 93591 -0.15640005738168838 YSFGESMCEY 10 Unmodified _YSFGESMCEY_ 0 0 0 ENSG00000185220|ENST00000329291|PGBD2;nc|ENSG00000185220|Q6P3X8-2|PGBD2 ENSG00000185220|ENST00000329291|PGBD2 ENSG00000185220|ENST00000329291|PGBD2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.2620849609375 2 608.220282 1214.42601 -0.0098703 -6.0033E-06 -0.52675 -0.00032038 -0.53662 -0.00032638 608.219397868111 63.847 0.3115 63.847 63.685 63.997 0 18 12 2 0 0 0 0.23693 1 35682 35682 6.2058 0 1 770650 80422 9346 53828 54958 93593 93593 -0.17262446638937945 YSFGKGCQSC 10 Unmodified _YSFGKGCQSC_ 0 0 0 REV__nc|ENSG00000196967|Q6P3V2-2|ZNF585A REV__nc|ENSG00000196967|Q6P3V2-2|ZNF585A MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.2174682617188 2 540.217877 1078.4212 0.045972 2.4835E-05 -1.0055 -0.00054319 -0.95954 -0.00051836 540.2170183654473 85.471 0.60703 79.295 79.008 79.615 -6.1757 128 37 5 0 0 0 0.67459 1 56361 56361 5.7319 0.97584 1 122590000 + 80423 23885 53829 54959 93594 93594 -0.11487285991051976 YSFLDKMSF 9 Oxidation (M) _YSFLDKM(Oxidation (M))SF_ YSFLDKM(1)SF YSFLDKM(70)SF 0 0 1 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 577.2654418945312 2 577.26535 1152.51615 0.26473 0.00015282 -0.45651 -0.00026352 -0.19178 -0.00011071 577.2652086169778 57.002 0.27936 56.516 56.369 56.649 -0.48554 26 12 3 0 0 0 0.013609 1 30974 30974 70.332 36.23 1 4887900 80424 1648 53830 54960 93595 93595 278 -0.054010292482416844 YSFLDKMSF 9 Oxidation (M) _YSFLDKM(Oxidation (M))SF_ YSFLDKM(1)SF YSFLDKM(50)SF 0 0 1 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.26513671875 2 577.26535 1152.51615 0.56931 0.00032864 0.10766 6.2149E-05 0.67697 0.00039079 577.2652363274034 56.678 0.24096 56.609 56.479 56.72 -0.068737 18 11 2 0 0 0 0.040683 1 30824 30824 49.554 33.707 1 5996700 80425 1648 53830 54960 93596 93596 278 -0.054010292482416844 YSFLDKMSF 9 Oxidation (M) _YSFLDKM(Oxidation (M))SF_ YSFLDKM(1)SF YSFLDKM(44)SF 0 0 1 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.265625 2 577.26535 1152.51615 1.0416 0.0006013 -0.50192 -0.00028974 0.53972 0.00031156 577.2653975611343 63.044 0.52278 56.869 56.608 57.13 -6.1757 72 27 4 0 0 0 0.05483 1 40613 40613 43.772 18.781 1 53059000 80426 1648 53830 54960 93597 93597 278 -0.054010292482416844 YSFLDKMSF 9 Oxidation (M) _YSFLDKM(Oxidation (M))SF_ 0 0 1 ENSG00000095319|ENST00000372577|NUP188;nc|ENSG00000095319|Q5SRE5-2|NUP188 ENSG00000095319|ENST00000372577|NUP188 ENSG00000095319|ENST00000372577|NUP188 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 577.26535 1152.51615 0.13377 7.7219E-05 -3.3076 -0.0019094 -3.1738 -0.0018321 577.2631777801577 56.464 0.13991 56.464 56.424 56.564 0 -0.15035 -0.003333 NaN 70.332 6 5 2 NaN NaN NaN NaN 0 NaN NaN 0 293850 80427 1648 53830 54960 278 -0.054010292482416844 YSFLIYTE 8 Unmodified _YSFLIYTE_ 0 0 0 ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL ENSG00000175445|ENST00000650287|LPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2528686523438 2 518.255308 1034.49606 0.3015 0.00015625 -2.3818 -0.0012344 -2.0803 -0.0010781 518.2535658977089 37.292 0.22887 37.292 37.18 37.409 0 22 11 3 0 0 0 0.67481 1 19837 19837 19.439 0.18201 1 3861800 80428 8517 53831 54961 93598 93598 -0.01980456916521689 YSFQNPSSF 9 Unmodified _YSFQNPSSF_ 0 0 0 ENSG00000164197|ENST00000389100|RNF180;nc|ENSG00000164197|Q86T96-2|RNF180 ENSG00000164197|ENST00000389100|RNF180;nc|ENSG00000164197|Q86T96-2|RNF180 nc|ENSG00000164197|Q86T96-2|RNF180 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.73974609375 2 538.737814 1075.46108 0.18847 0.00010154 2.9642 0.0015969 3.1526 0.0016984 538.7402050421755 65.582 0.30116 65.582 65.347 65.648 0 16 11 2 0 0 0 0.43463 1 36600 36600 10.824 0.64053 1 636940 80429 7162;16334 53832 54962 93599 93599 -0.0736369972448756 YSFSRSETY 9 Unmodified _YSFSRSETY_ 0 0 0 REV__ENSG00000181562|ENST00000326842|EDDM3A REV__ENSG00000181562|ENST00000326842|EDDM3A MSMS AL20221201_MKP_PDAC_01 4 570.253173828125 2 570.253828 1138.4931 NaN NaN NaN NaN NaN NaN NaN 61.394 1 55.246 54.746 55.746 -6.1478 0 0 0 0.6306 1 39545 39545 11.64 1.5664 1 + 80430 23212 53833 54963 93600 93600 -0.07060332041305628 YSFVFEFI 8 Unmodified _YSFVFEFI_ 0 0 0 REV__nc|ENSG00000172005|P21145-4|MAL REV__nc|ENSG00000172005|P21145-4|MAL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.2567749023438 2 526.260394 1050.50623 0.62218 0.00032743 -2.2607 -0.0011897 -1.6385 -0.00086228 526.2595014454724 81.735 0.35475 81.24 81.037 81.392 -0.4952 23 13 2 0 0 0 0.74163 1 44786 44786 13.508 1.8676 1 648360 + 80431 29781 53834 54964 93601 93601 -0.016998491912772806 YSFVWWDW 8 Unmodified _YSFVWWDW_ 0 0 0 ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU ENSG00000108784|ENST00000225927|NAGLU MSMS AL20221201_MKP_PDAC_01 4 396.8438720703125 3 396.843154 1187.50763 NaN NaN NaN NaN NaN NaN NaN 13.597 1 11.115 10.615 11.615 -2.482 0 0 0 0.97444 1 6890 6890 0.40072 0.1317 1 80432 2604 53835 54965 93602 93602 -0.07862215102522896 YSFYHRCK 8 Unmodified _YSFYHRCK_ 0 0 0 ENST00000398805.7_1_9:115142364-115166433:+|nuORF ENST00000398805.7_1_9:115142364-115166433:+|nuORF ENST00000398805.7_1_9:115142364-115166433:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2584228515625 2 552.258194 1102.50183 NaN NaN NaN NaN NaN NaN NaN 83.35 1 83.35 82.85 83.85 0 0 0 0 0.97444 1 46227 46227 2.5775 0 1 80433 12857 53836 54966 93603 93603 -0.04531636885849366 YSFYMQRI 8 Unmodified _YSFYMQRI_ 0 0 0 ENSG00000138152|ENST00000260723|BTBD16;nc|ENSG00000138152|Q32M84-2|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 ENSG00000138152|ENST00000260723|BTBD16 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.768310546875 2 554.268227 1106.5219 0.38303 0.0002123 -1.7973 -0.00099617 -1.4142 -0.00078387 554.768677363953 31.523 0.17124 31.42 31.333 31.505 -0.10269 13 6 3 0 0 0 8.7369 1 16433 16433 5.2307 0 1 1207400 80434 5026 53837 54967 93604 93604 -0.027098859458874358 YSFYPLLL 8 Unmodified _YSFYPLLL_ 0 0 0 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 508.2782897949219 2 508.278586 1014.54262 NaN NaN NaN NaN NaN NaN NaN 84.21 1 83.71 83.21 84.21 -0.49961 0 0 0 0.97348 1 46085 46085 5.7604 2.8712 1 + 80435 29808 53838 54968 93605 93605 0.03593027705437635 YSFYRHAL 8 Unmodified _YSFYRHAL_ 0 0 0 REV__ENSG00000198730|ENST00000361367|CTR9 REV__ENSG00000198730|ENST00000361367|CTR9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7666015625 2 528.766709 1055.51886 NaN NaN NaN NaN NaN NaN NaN 91.583 1 91.583 91.083 92.083 0 0 0 0 0.97444 1 50646 50646 2.8892 0 1 + 80436 24047 53839 54969 93606 93606 -0.006673930083934465 YSGDFHKYL 9 Unmodified _YSGDFHKYL_ 0 0 0 REV__CON__ENSEMBL:ENSBTAP00000024146 REV__CON__ENSEMBL:ENSBTAP00000024146 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.2672729492188 2 565.269281 1128.52401 NaN NaN NaN NaN NaN NaN NaN 79.735 1 79.735 79.235 80.235 0 0 0 0 0.7453 1 44283 44283 7.9102 3.1541 1 + + 80437 16827 53840 54970 93607 93607 -0.03511133936422084 YSGEICVW 8 Unmodified _YSGEICVW_ 0 0 0 nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43;nc|ENSG00000197748|Q8NDM7-4|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 956.4176635742188 1 956.41823 955.410954 0.35188 0.00033655 -0.92928 -0.00088878 -0.57739 -0.00055223 956.417434874822 90.408 0.29273 89.913 89.781 90.074 -0.49457 27 13 3 0 0 0 0.72953 1 49402 49402 14.582 1.0738 1 829380 80438 9997 53841 54971 93608 93608 -0.06853525653980341 YSGEICVW 8 Unmodified _YSGEICVW_ 0 0 0 nc|ENSG00000197748|Q8NDM7-2|CFAP43;ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43;nc|ENSG00000197748|Q8NDM7-4|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 nc|ENSG00000197748|Q8NDM7-2|CFAP43 MULTI-MSMS AL20221201_MKP_PDAC_01 4 958.2166748046875 1 956.41823 955.410954 0.80029 0.00076541 -0.29164 -0.00027893 0.50865 0.00048649 956.4179173724771 99.467 0.21528 93.292 93.201 93.416 -6.1757 31 13 3 0 0 0 0.67481 1 66235 66235 19.439 19.439 1 56218000 80439 9997 53841 54971 93609 93609 -0.06853525653980341 YSGLKDRLL 9 Unmodified _YSGLKDRLL_ 0 0 0 REV__ENSG00000112394|ENST00000368851|SLC16A10 REV__ENSG00000112394|ENST00000368851|SLC16A10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.8094482421875 2 532.808574 1063.60259 0.82114 0.00043751 2.3932 0.0012751 3.2143 0.0017126 532.8088256612582 52.532 0.29033 46.798 46.635 46.925 -5.7345 38 15 3 0 0 0 0.20428 1 33241 33241 22.736 4.5899 1 40182000 + 80440 18816 53842 54972 93610 93610 0.07333718368658992 YSGVALLRDI 10 Unmodified _YSGVALLRDI_ 0 0 0 REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|369|2|anti-sense REV__HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|369|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 553.8135375976562 2 553.813856 1105.61316 0.092353 5.1146E-05 -0.82706 -0.00045804 -0.7347 -0.00040689 553.8133350878298 60.594 0.118 60.104 60.03 60.148 -0.48932 7 5 2 0 0 0 0.64628 1 33015 33015 8.7454 0 1 1955300 + 80441 29378 53843 54973 93611 93611 0.06457701023077789 YSHEQCCWT 9 Unmodified _YSHEQCCWT_ 0 0 0 nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 nc|ENSG00000073464|P51793-2|CLCN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7147216796875 2 578.712959 1155.41136 0.6676 0.00038635 -0.70045 -0.00040536 -0.032848 -1.901E-05 578.712824765808 73.239 0.69257 73.239 72.945 73.638 0 190 34 7 0 0 0 0.61256 1 40969 40969 0.6015 0 1 27880000 80442 1106 53844 54974 93612 93612 -0.16012473996465815 YSHERCTLI 9 Unmodified _YSHERCTLI_ 0 0 0 ENSG00000113273|ENST00000264914|ARSB;nc|ENSG00000113273|P15848-2|ARSB ENSG00000113273|ENST00000264914|ARSB ENSG00000113273|ENST00000264914|ARSB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2703857421875 2 561.274041 1120.53353 0.75362 0.00042299 -3.7067 -0.0020805 -2.9531 -0.0016575 561.2721859329124 73.242 0.24771 73.242 73.174 73.421 0 17 13 2 0 0 0 0.48152 1 40783 40783 8.5933 1.304 1 712040 80443 2953 53845 54975 93613 93613 -0.021916889225394698 YSHFYNRGG 9 Unmodified _YSHFYNRGG_ 0 0 0 REV__ENST00000512502.5_1_4:82086096-82094913:+|nuORF REV__ENST00000512502.5_1_4:82086096-82094913:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 550.7490234375 2 550.749047 1099.48354 NaN NaN NaN NaN NaN NaN NaN 7.9409 1 7.9561 7.4561 8.4561 0.015238 0 0 0 0.8622 1 3958 3958 0 0 1 + 80444 28166 53846 54976 93614 93614 -0.06222055536204607 YSHGVPPHLF 10 Unmodified _YSHGVPPHLF_ 0 0 0 ENST00000601451.5_1_19:41210883-41211201:-|nuORF ENST00000601451.5_1_19:41210883-41211201:-|nuORF ENST00000601451.5_1_19:41210883-41211201:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 385.1982421875 3 385.197819 1152.57163 NaN NaN NaN NaN NaN NaN NaN 45.314 1 45.286 44.786 45.786 -0.028011 0 0 0 0.48706 1 24338 24338 22.658 0 1 80445 15806 53847 54977 93615 93615 0.0014456505439284228 YSHLEGARF 9 Unmodified _YSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.265380859375 2 540.267073 1078.51959 -0.56563 -0.00030559 -1.8193 -0.0009829 -2.3849 -0.0012885 540.266057244088 35.571 0.16149 35.348 35.288 35.45 -0.2224 9 7 2 0 0 0 0.0089732 1 18634 18634 86.332 53.546 1 3726900 80446 5401 53848 54978 93616 93616 -0.01652598359351032 YSHLEGARF 9 Unmodified _YSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 540.267822265625 2 540.267073 1078.51959 0.68464 0.00036989 -0.24901 -0.00013453 0.43564 0.00023536 540.2674108958669 39.524 0.36091 35.073 34.858 35.219 -4.4509 43 21 3 0 0 0 0.00044362 2 23399 23399;23533 145.13 88.953 1 12873000 80447 5401 53848 54978 93617;93618 93617 -0.01652598359351032 YSHLKSVL 8 Unmodified _YSHLKSVL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 473.7713928222656 2 473.77146 945.528367 NaN NaN NaN NaN NaN NaN NaN 34.143 1 34.172 33.672 34.672 0.028934 0 0 0 0.36399 1 17987 17987 57.722 27.497 1 80448 3985 53849 54979 93619 93619 0.053423752771550426 YSHLKSVL 8 Unmodified _YSHLKSVL_ 0 0 0 nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;nc|ENSG00000127054|Q5TA45-2|INTS11;ENST00000470030.6_1_1:1247241-1248711:-|nuORF nc|ENSG00000127054|Q5TA45-4|INTS11 nc|ENSG00000127054|Q5TA45-4|INTS11 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 473.7191772460938 2 473.77146 945.528367 0.57117 0.00027061 -0.52725 -0.0002498 0.043926 2.0811E-05 473.7714454939896 38.422 0.2259 34.053 33.9 34.126 -4.3689 23 13 2 0 0 0 8.7369 1 22655 22655 39.95 21.815 1 8830700 80449 3985 53849 54979 93620 93620 0.053423752771550426 YSHLRQMF 8 Unmodified _YSHLRQMF_ 0 0 0 REV__nc|ENSG00000156983|P55201-4|BRPF1 REV__nc|ENSG00000156983|P55201-4|BRPF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 541.7225341796875 2 541.266019 1080.51748 0.55096 0.00029821 -2.2795 -0.0012338 -1.7285 -0.0009356 541.2649273732571 81.639 0.14815 81.144 81.062 81.21 -0.4952 8 5 2 0 0 0 8.7369 1 44701 44701 2.8892 0 1 252070 + 80450 21357 53850 54980 93621 93621 -0.019553503688030105 YSHLRYVF 8 Unmodified _YSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7825317382812 2 542.782359 1083.55016 0.037547 2.038E-05 -0.74679 -0.00040534 -0.70924 -0.00038496 542.7824140369926 45.321 0.23608 45.293 45.185 45.421 -0.028011 25 11 3 0 0 0 0.078813 1 24333 24333 111.29 60.432 1 34051000 80451 1378 53851 54981 93622 93622 0.01173180025716647 YSHLRYVF 8 Unmodified _YSHLRYVF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7823486328125 2 542.782359 1083.55016 0.62667 0.00034015 -0.69929 -0.00037956 -0.072625 -3.942E-05 542.7816713393712 49.937 0.25193 44.398 44.201 44.452 -5.5391 26 15 2 0 0 0 0.055179 1 31237 31237 136.33 91.926 1 25339000 80452 1378 53851 54981 93623 93623 0.01173180025716647 YSHPGHSNNL 10 Unmodified _YSHPGHSNNL_ 0 0 0 ENST00000595585.1_1_19:51452094-51455913:-|nuORF ENST00000595585.1_1_19:51452094-51455913:-|nuORF ENST00000595585.1_1_19:51452094-51455913:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.2571411132812 2 563.257237 1124.49992 -0.062103 -3.498E-05 -3.1167 -0.0017555 -3.1788 -0.0017905 563.2565406442061 37.152 0.3316 36.902 36.729 37.061 -0.2497 33 13 3 0 0 0 0.27276 1 19472 19472 29.082 7.3349 1 9517400 80453 15758 53852 54982 93624 93624 -0.057349743701024636 YSHQIAHSGEK 11 Unmodified _YSHQIAHSGEK_ 0 0 0 ZNF225|p.R420I|1|0.2|ENSG00000256294|chr19:44131873-44131873|G/T|missense_variant ZNF225|p.R420I|1|0.2|ENSG00000256294|chr19:44131873-44131873|G/T|missense_variant ZNF225|p.R420I|1|0.2|ENSG00000256294|chr19:44131873-44131873|G/T|missense_variant MULTI-SECPEP AL20221201_MKP_PDAC_01 4 419.8960571289062 3 419.538793 1255.59455 1.1831 0.00049635 1.8148 0.00076139 2.9979 0.0012577 419.53912105284024 22.08 0.099792 19.345 19.274 19.374 -2.7348 7 5 2 0 0 0 0.30538 1 11870 11870 1.0136 0.85425 1 1028100 80454 30211 53853 54983 93625 93625 -0.0230246061876187 YSHSIVTTR 9 Unmodified _YSHSIVTTR_ 0 0 0 REV__ENSG00000171944|ENST00000307388|OR52A5 REV__ENSG00000171944|ENST00000307388|OR52A5 MSMS AL20221201_MKP_PDAC_01 4 532.282470703125 2 532.28018 1062.54581 NaN NaN NaN NaN NaN NaN NaN 47.433 1 42.199 41.699 42.699 -5.2339 0 0 0 0.12343 1 29437 29437 39.95 1.9757 1 + 80455 22614 53854 54984 93626 93626 0.01703670812139535 YSHTYETLY 9 Unmodified _YSHTYETLY_ 0 0 0 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 ENSG00000163013|ENST00000520530|FBXO41 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.765380859375 2 588.764029 1175.5135 NaN NaN NaN NaN NaN NaN NaN 68.94 1 68.94 68.44 69.44 0 0 0 0 0.76439 1 38417 38417 7.2892 2.96 1 80456 6941 53855 54985 93627 93627 -0.06723161381501086 YSICECHL 8 Unmodified _YSICECHL_ 0 0 0 REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF REV__ENST00000541310.5_1_12:22631189-22697084:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2015991210938 2 484.204238 966.393924 NaN NaN NaN NaN NaN NaN NaN 59.906 1 59.906 59.406 60.406 0 0 0 0 0.88073 1 33398 33398 19.439 5.9311 1 + 80457 28597 53856 54986 93628 93628 -0.09061769531444952 YSIEMGFHI 9 Unmodified _YSIEMGFHI_ 0 0 0 ENST00000266673.9_1_12:72094796-72094937:+|nuORF ENST00000266673.9_1_12:72094796-72094937:+|nuORF ENST00000266673.9_1_12:72094796-72094937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 366.1762084960938 3 366.175915 1095.50592 0.59872 0.00021924 -0.19559 -7.162E-05 0.40314 0.00014762 366.1758196383727 47.683 0.1859 47.33 47.223 47.409 -0.3526 14 8 2 0 0 0 0.53666 1 25569 25569 2.9952 1.0889 1 2076100 80458 11346 53857 54987 93629 93629 -0.038015921827991406 YSIERFEKP 9 Unmodified _YSIERFEKP_ 0 0 0 REV__ENSG00000143799|ENST00000366794|PARP1 REV__ENSG00000143799|ENST00000366794|PARP1 MSMS AL20221201_MKP_PDAC_01 4 584.8038330078125 2 584.803488 1167.59242 NaN NaN NaN NaN NaN NaN NaN 71.506 1 65.33 64.83 65.83 -6.1757 0 0 0 0.26013 1 46734 46734 29.082 6.3453 1 + 80459 20671 53858 54988 93630 93630 0.01533110643413238 YSIRRLIKV 9 Unmodified _YSIRRLIKV_ 0 0 0 ENST00000503255.5_1_4:144918665-144940440:-|nuORF ENST00000503255.5_1_4:144918665-144940440:-|nuORF ENST00000503255.5_1_4:144918665-144940440:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 574.3690185546875 2 574.369133 1146.72371 NaN NaN NaN NaN NaN NaN NaN 106.46 1 100.29 99.786 100.79 -6.1757 0 0 0 0.8622 1 71261 71261 0 0 1 80460 14467 53859 54989 93631 93631 0.1562196580196087 YSISSFLQM 9 Unmodified _YSISSFLQM_ 0 0 0 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 ENSG00000204624|ENST00000294484|DISP3 MSMS AL20221201_MKP_PDAC_01 4 538.2611083984375 2 538.260068 1074.50558 NaN NaN NaN NaN NaN NaN NaN 20.648 1 17.955 17.455 18.455 -2.693 0 0 0 0.76439 1 11007 11007 7.2892 0 1 80461 10311 53860 54990 93632 93632 -0.02869011902657803 YSITKKSMK 9 Unmodified _YSITKKSMK_ 0 0 0 ENSG00000176040|ENST00000452346|TMPRSS7;nc|ENSG00000176040|Q7RTY8-3|TMPRSS7;nc|ENSG00000176040|Q7RTY8-2|TMPRSS7 ENSG00000176040|ENST00000452346|TMPRSS7 ENSG00000176040|ENST00000452346|TMPRSS7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.3035888671875 2 543.30481 1084.59507 0.27486 0.00014933 1.6925 0.00091952 1.9673 0.0010689 543.3058959647796 99.078 0.30172 92.902 92.689 92.99 -6.1757 46 19 4 0 0 0 0.25681 1 65891 65891 19.257 5.7491 1 426170000 80462 8559 53861 54991 93633 93633 0.05615242776730156 YSITKTES 8 Unmodified _YSITKTES_ 0 0 0 REV__ENSG00000150269|ENST00000279791|OR5M9 REV__ENSG00000150269|ENST00000279791|OR5M9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 928.45458984375 1 928.462204 927.454927 0.70159 0.0006514 -0.29044 -0.00026966 0.41115 0.00038174 928.4617925253547 49.804 0.38039 49.804 49.629 50.009 0 49 17 4 0 0 0 0.63229 1 27361 27361 23.148 8.3102 1 36861000 + 80463 21020 53862 54992 93634 93634 -0.011702179559847536 YSIVEHNWF 9 Unmodified _YSIVEHNWF_ 0 0 0 nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A nc|ENSG00000153253|Q9NY46-4|SCN3A nc|ENSG00000153253|Q9NY46-4|SCN3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.779541015625 2 597.782556 1193.55056 0.44746 0.00026748 -0.25288 -0.00015116 0.19458 0.00011632 597.782260402567 65.02 0.40961 64.536 64.254 64.663 -0.48428 30 18 2 0 0 0 0.49272 2 35518 35424;35518 7.9102 1.187 1 1503600 80464 6253 53863 54993 93635;93636 93636 -0.038474450451076336 YSIVISVPDF 10 Unmodified _YSIVISVPDF_ 0 0 0 REV__ENST00000548058.5_2_12:81648846-81648915:+|nuORF REV__ENST00000548058.5_2_12:81648846-81648915:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.5388793945312 3 380.537619 1138.59103 1.3052 0.00049667 1.3084 0.00049791 2.6136 0.00099458 380.53818886791254 49.942 0.37626 44.403 44.218 44.594 -5.5391 37 23 2 0 0 0 0.56675 1 31194 31194 12.873 4.1272 1 10059000 + 80465 28680 53864 54994 93637 93637 0.02727476554673558 YSIYLLDTVNQ 11 Unmodified _YSIYLLDTVNQ_ 0 0 0 nc|ENSG00000196663|O15040-2|TECPR2;ENSG00000196663|ENST00000359520|TECPR2 nc|ENSG00000196663|O15040-2|TECPR2 nc|ENSG00000196663|O15040-2|TECPR2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 665.3414916992188 2 664.840268 1327.66598 0.26788 0.0001781 0.54781 0.0003642 0.81568 0.0005423 664.8403404182787 73.049 0.26622 73.049 72.883 73.149 0 32 11 4 0 0 0 0.30577 1 40721 40721 1.1933 0.12188 1 2078100 80466 9857 53865 54995 93638 93638 0.015256142952239315 YSIYRNTSR 9 Unmodified _YSIYRNTSR_ 0 0 0 REV__ENST00000547733.1_1_12:39688007-39688133:-|nuORF REV__ENST00000547733.1_1_12:39688007-39688133:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.199951171875 3 387.2 1158.57817 -0.43131 -0.000167 1.2712 0.00049223 0.83994 0.00032522 387.20037758480225 24.687 0.23026 24.687 24.572 24.802 0 34 13 3 0 0 0 0.34999 1 12609 12609 10.151 0 1 4407600 + 80467 28676 53866 54996 93639 93639 0.005224582151413415 YSKKIVKLL 9 Unmodified _YSKKIVKLL_ 0 0 0 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENSG00000159086|ENST00000331923|PAXBP1;ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 nc|ENSG00000159086|Q9Y5B6-2|PAXBP1 MSMS AL20221201_MKP_PDAC_01 4 546.3638916015625 2 546.362985 1090.71142 NaN NaN NaN NaN NaN NaN NaN 106.82 1 100.64 100.14 101.14 -6.1757 0 0 0 0.8622 1 71481 71481 0 0 1 80468 6625 53867 54997 93640 93640 0.1696892933896379 YSKLEYAAGS 10 Unmodified _YSKLEYAAGS_ 0 0 0 REV__ENSG00000047346|ENST00000619572|ATOSA REV__ENSG00000047346|ENST00000619572|ATOSA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.76806640625 2 544.766571 1087.51859 0.57412 0.00031276 0.04619 2.5163E-05 0.62031 0.00033793 544.7667417102863 73.221 0.35017 73.221 73.005 73.355 0 29 16 2 0 0 0 0.63399 1 40735 40735 9.3831 0.78985 1 3113400 + 80469 17224 53868 54998 93641 93641 -0.021668575189096373 YSKLNSRIF 9 Unmodified _YSKLNSRIF_ 0 0 0 ENSG00000181004|ENST00000314218|BBS12 ENSG00000181004|ENST00000314218|BBS12 ENSG00000181004|ENST00000314218|BBS12 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.3126831054688 2 564.314023 1126.61349 NaN NaN NaN NaN NaN NaN NaN 69.338 1 68.859 68.359 69.359 -0.47914 0 0 0 0.6306 1 37905 37905 11.64 6.8843 1 80470 8940 53869 54999 93642 93642 0.05525120742936451 YSKNCMML 8 Unmodified _YSKNCMML_ 0 0 0 REV__ENST00000342691.5_1_X:40767440-40767641:+|nuORF REV__ENST00000342691.5_1_X:40767440-40767641:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.217529296875 2 495.216291 988.41803 0.4705 0.000233 -0.98658 -0.00048857 -0.51608 -0.00025557 495.2158132508292 57.613 0.40202 57.613 57.443 57.845 0 43 19 3 0 0 0 0.6895 1 32039 32039 18.135 8.7875 1 14677000 + 80471 25724 53870 55000 93643 93643 -0.0766425236942041 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.42333984375 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 91.712 1 91.712 91.212 92.212 0 0 0 0 1.0061 1 50717 50717 0 0 1 80472 14852 53871 55001 93644 93644 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.084716796875 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 91.765 1 91.765 91.265 92.265 0 0 0 0 1.0061 1 50746 50746 0 0 1 80473 14852 53871 55001 93645 93645 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.42138671875 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 92.188 1 92.188 91.688 92.688 0 0 0 0 1.0061 1 50976 50976 0 0 1 80474 14852 53871 55001 93646 93646 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.419677734375 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 92.968 1 92.968 92.468 93.468 0 0 0 0 1.0061 1 51404 51404 0 0 1 80475 14852 53871 55001 93647 93647 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.4224853515625 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 94.216 1 94.216 93.716 94.716 0 0 0 0 1.0061 1 52081 52081 0 0 1 80476 14852 53871 55001 93648 93648 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.42138671875 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 93.77 1 93.35 92.85 93.85 -0.42044 0 0 0 1.0061 1 51236 51236 0 0 1 80477 14852 53871 55001 93649 93649 0.19453881927574912 YSKQKKKKKK 10 Unmodified _YSKQKKKKKK_ 0 0 0 ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF ENST00000528205.1_1_11:57472131-57479651:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 647.4227294921875 2 647.421897 1292.82924 NaN NaN NaN NaN NaN NaN NaN 107.3 1 101.12 100.62 101.62 -6.1757 0 0 0 1.0061 1 71774 71774 0 0 1 80478 14852 53871 55001 93650 93650 0.19453881927574912 YSKQMQRF 8 Oxidation (M) _YSKQM(Oxidation (M))QRF_ YSKQM(1)QRF YSKQM(79)QRF 0 0 1 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7687377929688 2 552.268758 1102.52296 0.49216 0.00027181 -0.86363 -0.00047696 -0.37147 -0.00020515 552.7697770175347 17.66 0.25383 15.073 14.971 15.225 -2.5866 94 36 3 0 0 0 0.17811 2 9208 9208;9320 78.728 54.475 1 11380000 80479 9847;3221 53872 55002 93651;93652 93651 573 -0.024196715769903676 YSKQMQRF 8 Unmodified _YSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 544.2713012695312 2 544.271301 1086.52805 -0.066454 -3.6169E-05 0.82798 0.00045065 0.76153 0.00041448 544.2714206704452 25.992 0.26525 23.041 22.904 23.169 -2.9511 44 16 3 0 0 0 0.053974 2 14331 14208;14331 142.08 88.247 1 22416000 80480 9847;3221 53872 55003 93653;93654 93654 -0.011753677143587993 YSKQMQRF 8 Unmodified _YSKQMQRF_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 362.8832397460938 3 363.183293 1086.52805 0.66557 0.00024173 -0.97208 -0.00035304 -0.30651 -0.00011132 363.5172725344397 25.925 0.048189 22.974 22.955 23.003 -2.9511 4 2 2 0 0 0 8.7369 1 14240 14240 19.257 16.262 1 2746400 80481 9847;3221 53872 55003 93655 93655 -0.011753677143587993 YSKSFSFTL 9 Unmodified _YSKSFSFTL_ 0 0 0 REV__ENST00000397457.6_2_6:8015064-8015154:-|nuORF REV__ENST00000397457.6_2_6:8015064-8015154:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.2732543945312 2 540.274032 1078.53351 NaN NaN NaN NaN NaN NaN NaN 31.139 1 31.139 30.639 31.639 0 0 0 0 0.7453 1 16208 16208 7.9102 0.62092 1 + 80482 26536 53873 55004 93656 93656 -0.0026136565088563657 YSKWDAQEI 9 Unmodified _YSKWDAQEI_ 0 0 0 REV__ENST00000373511.6_1_9:128200610-128200739:-|nuORF REV__ENST00000373511.6_1_9:128200610-128200739:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 570.274169921875 2 570.272021 1138.52949 1.1459 0.00065346 0.6986 0.00039839 1.8445 0.0010519 570.2725077992933 52.765 0.46581 47.031 46.783 47.249 -5.7345 43 25 2 0 0 0 0.015445 1 33246 33246 68.081 0 1 34358000 + 80483 26148 53874 55005 93657 93657 -0.03423455144616128 YSKYYKTID 9 Unmodified _YSKYYKTID_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2011108398438 3 394.201007 1179.58119 -0.38297 -0.00015097 0.98196 0.00038709 0.599 0.00023612 394.20130640167275 22.537 0.16755 22.537 22.423 22.59 0 18 7 3 0 0 0 0.44883 1 11460 11460 10.315 8.573 1 1851500 + 80484 169 53875 55006 93658 93658 -0.0014171145071486535 YSKYYKTID 9 Unmodified _YSKYYKTID_ 0 0 0 ENSG00000186395|ENST00000269576|KRT10;CON__P13645 ENSG00000186395|ENST00000269576|KRT10 ENSG00000186395|ENST00000269576|KRT10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.1997680664062 3 394.201007 1179.58119 0.15715 6.195E-05 -0.31888 -0.0001257 -0.16173 -6.3753E-05 394.20082271965225 25.342 0.29716 22.459 22.309 22.606 -2.8831 42 16 3 0 0 0 0.42049 1 13867 13867 15.739 10.007 1 8434400 + 80485 169 53875 55006 93659 93659 -0.0014171145071486535 YSLAYYNQPE 10 Unmodified _YSLAYYNQPE_ 0 0 0 ENST00000489998.5_1_1:157765891-157772050:-|nuORF;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1 ENST00000489998.5_1_1:157765891-157772050:-|nuORF ENST00000489998.5_1_1:157765891-157772050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.5250854492188 3 416.524149 1246.55062 0.52407 0.00021829 0.4644 0.00019343 0.98847 0.00041172 416.5245879830954 83.264 0.24754 82.766 82.642 82.89 -0.49751 20 9 4 0 0 0 0.69377 1 45584 45584 1.7423 0 1 963740 80486 7013 53876 55007 93660 93660 -0.06279489835787899 YSLAYYNQPE 10 Unmodified _YSLAYYNQPE_ 0 0 0 ENST00000489998.5_1_1:157765891-157772050:-|nuORF;nc|ENSG00000163534|Q96LA6-2|FCRL1;ENSG00000163534|ENST00000368176|FCRL1 ENST00000489998.5_1_1:157765891-157772050:-|nuORF ENST00000489998.5_1_1:157765891-157772050:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.2838134765625 2 624.282586 1246.55062 1.2526 0.00078197 1.1932 0.00074488 2.4458 0.0015269 624.2830705375037 82.656 0.2854 82.718 82.529 82.815 0.062004 23 10 3 0 0 0 0.65282 1 45744 45744 8.1555 0 1 3138900 80487 7013 53876 55007 93661 93661 -0.06279489835787899 YSLCRHPQQL 10 Unmodified _YSLCRHPQQL_ 0 0 0 REV__ENST00000484457.5_1_3:33416838-33418797:+|nuORF REV__ENST00000484457.5_1_3:33416838-33418797:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 622.814697265625 2 622.813864 1243.61318 2.3281 0.0014499 -0.49887 -0.0003107 1.8292 0.0011392 622.813469801266 95.144 0.34982 95.148 94.972 95.322 0.0041504 35 12 5 0 0 0 0.60623 1 52925 52925 10.824 0.75 1 6364000 + 80488 27761 53877 55008 93662 93662 0.001113777514319736 YSLDFPPTY 9 Unmodified _YSLDFPPTY_ 0 0 0 REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2 REV__nc|ENSG00000106772|Q8WUY3-4|PRUNE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2572631835938 2 551.758215 1101.50188 0.54392 0.00030011 -0.83066 -0.00045832 -0.28674 -0.00015821 552.2580645481429 89.394 0.87286 88.892 88.418 89.291 -0.50171 50 38 2 0 0 0 0.54444 1 49085 49085 4.756 0 1 604480 + 80489 18534 53878 55009 93663 93663 -0.0448135840483701 YSLEASPLG 9 Unmodified _YSLEASPLG_ 0 0 0 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 nc|ENSG00000086758|Q7Z6Z7-2|HUWE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.8699340820312 2 468.737283 935.460012 NaN NaN NaN NaN NaN NaN NaN 53.652 1 53.652 53.152 54.152 0 0 0 0 0.7453 1 29752 29752 7.9102 0 1 80490 1444 53879 55010 93664 93664 -0.010299140933625495 YSLEEPRTL 9 Unmodified _YSLEEPRTL_ 0 0 0 REV__ENST00000471369.1_1_1:36883742-36884717:-|nuORF REV__ENST00000471369.1_1_1:36883742-36884717:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.2890625 2 554.287671 1106.56079 0.93305 0.00051718 0.99529 0.00055168 1.9283 0.0010689 554.2887102550277 81.596 0.28594 81.101 80.95 81.236 -0.4952 19 11 2 0 0 0 0.36964 1 44694 44694 13.906 0 1 781010 + 80491 19072 53880 55011 93665 93665 0.011771178894832701 YSLEKLESL 9 Unmodified _YSLEKLESL_ 0 0 0 REV__nc|ENSG00000165671|Q96L73-2|NSD1 REV__nc|ENSG00000165671|Q96L73-2|NSD1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 540.7571411132812 2 541.292422 1080.57029 0.94051 0.00050909 -0.86398 -0.00046767 0.076525 4.1423E-05 541.2916804800612 54.455 0.15452 54.455 54.33 54.484 0 11 6 2 0 0 0 0.17718 1 30177 30177 14.838 5.4551 1 1232000 + 80492 22034 53881 55012 93666 93666 0.03322886174987616 YSLEYFQF 8 Unmodified _YSLEYFQF_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7516479492188 2 548.752933 1095.49131 -0.32524 -0.00017848 -2.7412 -0.0015043 -3.0665 -0.0016827 548.7521903903873 34.746 0.15408 34.746 34.656 34.81 0 14 7 2 0 0 0 0.50673 1 18331 18331 34.102 7.2188 1 2955500 80493 3033 53882 55013 93667 93667 -0.052613410592812215 YSLEYFQF 8 Unmodified _YSLEYFQF_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF ENSG00000114374|ENST00000338981|USP9Y ENSG00000114374|ENST00000338981|USP9Y MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.751953125 2 548.752933 1095.49131 NaN NaN NaN NaN NaN NaN NaN 90.697 1 90.202 89.702 90.702 -0.49457 0 0 0 0.94494 1 49574 49574 11.64 3.047 1 80494 3033 53882 55013 93668 93668 -0.052613410592812215 YSLGDQFHGML 11 Unmodified _YSLGDQFHGML_ 0 0 0 REV__ENSG00000121380|ENST00000308721|BCL2L14 REV__ENSG00000121380|ENST00000308721|BCL2L14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 635.2970581054688 2 634.29243 1266.57031 0.32386 0.00020542 0.011685 7.4118E-06 0.33554 0.00021283 634.2927331695128 62.067 0.7066 55.891 55.576 56.283 -6.1757 91 39 3 0 0 0 0.42108 1 39904 39904 20.415 7.3721 1 36087000 + 80495 19290 53883 55014 93669 93669 -0.0523143709665419 YSLGERHAEG 10 Unmodified _YSLGERHAEG_ 0 0 0 REV__ENSG00000188916|ENST00000522781|INSYN2A REV__ENSG00000188916|ENST00000522781|INSYN2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.7650756835938 2 559.764894 1117.51524 NaN NaN NaN NaN NaN NaN NaN 17.231 1 17.231 16.731 17.731 0 0 0 0 0.97592 1 8473 8473 3.2813 0 1 + 80496 23744 53884 55015 93670 93670 -0.03882107572917448 YSLGSRLSLH 10 Unmodified _YSLGSRLSLH_ 0 0 0 REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5412902832031 3 378.208495 1131.60366 1.0501 0.00039716 0.12614 4.7707E-05 1.1762 0.00044487 378.54237695694275 56.745 0.57476 50.768 50.446 51.021 -5.9769 104 33 4 0 0 0 0.5905 1 36339 36339 6.6304 1.3335 1 96739000 + 80497 29202 53885 55016 93671 93671 0.04311932737573443 YSLHFDAFH 9 Unmodified _YSLHFDAFH_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7633666992188 2 568.761623 1135.50869 0.23031 0.00013099 3.1603 0.0017974 3.3906 0.0019284 568.762936833532 24.015 0.21485 24.013 23.885 24.1 -0.0016766 16 11 2 0 0 0 0.30202 1 12228 12228 12.532 0 1 3968000 80498 1491 53886 55017 93672 93672 -0.053640007336070994 YSLHFDAFH 9 Unmodified _YSLHFDAFH_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 379.5108947753906 3 379.510174 1135.50869 0.068443 2.5975E-05 1.8819 0.00071418 1.9503 0.00074016 379.51086778026183 23.987 0.45791 23.985 23.796 24.254 -0.0016747 60 23 4 0 0 0 0.4887 1 12234 12234 8.1555 1.9637 1 23023000 80499 1491 53886 55017 93673 93673 -0.053640007336070994 YSLHFDAFH 9 Unmodified _YSLHFDAFH_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7628173828125 2 568.761623 1135.50869 0.30505 0.0001735 2.7992 0.0015921 3.1043 0.0017656 568.7630205569335 24.593 0.20995 24.592 24.478 24.688 -0.0016747 16 7 3 0 0 0 0.15471 1 12563 12563 30.225 5.2339 1 13063000 80500 1491 53886 55017 93674 93674 -0.053640007336070994 YSLHFDAFH 9 Unmodified _YSLHFDAFH_ 0 0 0 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 ENSG00000088538|ENST00000266037|DOCK3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7619018554688 2 568.761623 1135.50869 NaN NaN NaN NaN NaN NaN NaN 27.277 1 27.231 26.731 27.731 -0.046408 0 0 0 0.18351 1 14053 14053 28.487 11.545 1 80501 1491 53886 55017 93675 93675 -0.053640007336070994 YSLHRPEEV 9 Unmodified _YSLHRPEEV_ 0 0 0 nc|ENSG00000171467|Q5VUA4-2|ZNF318;ENSG00000171467|ENST00000361428|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 nc|ENSG00000171467|Q5VUA4-2|ZNF318 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 376.889404296875 3 377.192734 1128.55637 1.7214 0.00064931 0.45168 0.00017037 2.1731 0.00081968 377.1930984017835 37.209 0.21416 32.926 32.873 33.087 -4.2835 16 12 2 0 0 0 0.21846 1 21916 21916 2.086 0.43339 1 5420800 80502 8104 53887 55018 93676 93676 -0.002763465334282955 YSLHSFDRKW 10 Unmodified _YSLHSFDRKW_ 0 0 0 ENSG00000093167|ENST00000336686|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 ENSG00000093167|ENST00000336686|LRRFIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 446.8936157226562 3 446.891166 1337.65167 1.5826 0.00070726 2.0282 0.00090637 3.6108 0.0016136 446.8923774142441 64.329 0.36317 58.154 57.899 58.262 -6.1757 25 18 2 0 0 0 0.50362 1 41638 41638 10.315 0 1 11468000 80503 1632 53888 55019 93677 93677 -0.0036499334239579184 YSLILFFF 8 Unmodified _YSLILFFF_ 0 0 0 ENST00000486787.1_1_2:232160870-232209803:+|nuORF ENST00000486787.1_1_2:232160870-232209803:+|nuORF ENST00000486787.1_1_2:232160870-232209803:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.7869873046875 2 525.288954 1048.56336 0.44686 0.00023473 -4.3061 -0.002262 -3.8593 -0.0020272 525.2854735378505 47.088 0.36754 47.088 46.901 47.269 0 54 17 5 0 0 0 0.64035 1 25816 25816 22.453 0 1 14431000 80504 14189 53889 55020 93678 93678 0.04101618085064729 YSLINTEP 8 Unmodified _YSLINTEP_ 0 0 0 REV__ENSG00000162999|ENST00000354221|DUSP19 REV__ENSG00000162999|ENST00000354221|DUSP19 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.7367858886719 2 468.737283 935.460012 NaN NaN NaN NaN NaN NaN NaN 53.734 1 53.734 53.234 54.234 0 0 0 0 0.97348 1 29799 29799 5.7604 0 1 + 80505 21716 53890 55021 93679 93679 -0.010299140933852868 YSLLDLLCY 9 Unmodified _YSLLDLLCY_ 0 0 0 ENST00000594883.1_1_19:57687110-57687311:+|nuORF ENST00000594883.1_1_19:57687110-57687311:+|nuORF ENST00000594883.1_1_19:57687110-57687311:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 551.7784423828125 2 551.778093 1101.54163 NaN NaN NaN NaN NaN NaN NaN 94.95 1 88.774 88.274 89.274 -6.1757 0 0 0 0.57317 1 62889 62889 13.508 1.8676 1 80506 15753 53891 55022 93680 93680 -0.005075547258002189 YSLLEKDYF 9 Unmodified _YSLLEKDYF_ 0 0 0 nc|ENSG00000172159|A2A2Y4-5|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3;ENSG00000172159|ENST00000304195|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 nc|ENSG00000172159|A2A2Y4-5|FRMD3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.7646484375 2 589.292422 1176.57029 0.12477 7.3528E-05 -2.461 -0.0014502 -2.3362 -0.0013767 589.2906024722521 78.815 0.32011 78.329 78.165 78.485 -0.48596 20 12 2 0 0 0 0.18882 1 43229 43229 15.847 0 1 922490 80507 8186 53892 55023 93681 93681 -0.010931138250271033 YSLQDYIF 8 Unmodified _YSLQDYIF_ 0 0 0 nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000271271|ENST00000604629|UGT2A2;nc|ENSG00000173610|P0DTE4-4|UGT2A1 nc|ENSG00000271271|P0DTE5-2|UGT2A2 nc|ENSG00000271271|P0DTE5-2|UGT2A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.7534790039062 2 524.752933 1047.49131 -0.27274 -0.00014312 0.97261 0.00051038 0.69986 0.00036726 524.7534039910789 51.343 0.33418 51.289 51.067 51.401 -0.053871 26 16 2 0 0 0 0.40035 1 27763 27763 44.407 0 1 4533700 80508 10884 53893 55024 93682 93682 -0.03053341059307968 YSLQRYPG 8 Unmodified _YSLQRYPG_ 0 0 0 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 ENSG00000174607|ENST00000310836|UGT8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2507629394531 2 492.250892 982.48723 NaN NaN NaN NaN NaN NaN NaN 28.967 1 28.997 28.497 29.497 0.030106 0 0 0 0.97444 1 15098 15098 0.69038 0 1 80509 8441 53894 55025 93683 93683 -0.004713857623414697 YSLRFSPGY 9 Unmodified _YSLRFSPGY_ 0 0 0 nc|ENSG00000156096|P06133-3|UGT2B4;nc|ENSG00000156096|P06133-2|UGT2B4;ENSG00000156096|ENST00000305107|UGT2B4 nc|ENSG00000156096|P06133-3|UGT2B4 nc|ENSG00000156096|P06133-3|UGT2B4 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 544.8221435546875 2 545.271824 1088.5291 0.70289 0.00038327 -3.6621 -0.0019968 -2.9592 -0.0016136 545.2705638747573 91.306 0.20947 85.13 85.042 85.252 -6.1757 15 11 2 0 0 0 0.18521 1 60352 60352 7.2892 0 1 3769500 80510 6428 53895 55026 93684 93684 -0.011628300738038888 YSLRVTTVY 9 Unmodified _YSLRVTTVY_ 0 0 0 REV__ENST00000589097.5_1_19:2236362-2236647:-|nuORF REV__ENST00000589097.5_1_19:2236362-2236647:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7587280273438 2 551.300581 1100.58661 0.69576 0.00038357 -0.07275 -4.0107E-05 0.62301 0.00034346 551.30089826891 74.106 0.39674 74.106 73.945 74.342 0 38 18 3 0 0 0 0.58466 1 41291 41291 2.3027 0 1 1463700 + 80511 29134 53896 55027 93685 93685 0.04034012131751297 YSLSFCVICT 10 Unmodified _YSLSFCVICT_ 0 0 0 ENST00000573360.5_1_16:10869027-10869264:-|nuORF ENST00000573360.5_1_16:10869027-10869264:-|nuORF ENST00000573360.5_1_16:10869027-10869264:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 379.1916809082031 3 379.176928 1134.50895 NaN NaN NaN NaN NaN NaN NaN 51.167 1 45.518 45.018 46.018 -5.649 0 0 0 0.8634 1 32174 32174 9.544 4.647 1 80512 15498 53897 55028 93686 93686 -0.05292085120277079 YSLSKHLRH 9 Unmodified _YSLSKHLRH_ 0 0 0 nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF nc|ENSG00000134686|Q8IXK0-3|PHC2 nc|ENSG00000134686|Q8IXK0-3|PHC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.8175048828125 2 570.817264 1139.61998 0.13831 7.8948E-05 0.29714 0.00016961 0.43545 0.00024856 570.817561115532 32.071 0.17277 31.942 31.842 32.015 -0.12915 11 6 2 0 0 0 0.58865 1 16719 16719 2.0598 0 1 888350 80513 14174 53898 55029 93687 93687 0.055750586943076996 YSLSLGKKGY 10 Unmodified _YSLSLGKKGY_ 0 0 0 REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF REV__ENST00000303115.7_1_5:35874625-35876091:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2877807617188 2 558.308406 1114.60226 0.84253 0.00047039 2.3564 0.0013156 3.1989 0.001786 558.3084689460328 68.051 0.24741 67.569 67.411 67.659 -0.48218 18 11 2 0 0 0 0.62068 1 37170 37170 10.074 1.3285 1 2215900 + 80514 25348 53899 55030 93688 93688 0.04954298648817712 YSLSRPWGQY 10 Unmodified _YSLSRPWGQY_ 0 0 0 nc|ENSG00000142606|Q495T6-2|MMEL1 nc|ENSG00000142606|Q495T6-2|MMEL1 nc|ENSG00000142606|Q495T6-2|MMEL1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.874755859375 3 419.540134 1255.59857 0.30591 0.00012834 -0.71593 -0.00030036 -0.41002 -0.00017202 419.53975024171496 43.514 0.1298 43.499 43.421 43.551 -0.015667 8 5 2 0 0 0 0.23137 1 23345 23345 14.218 5.2419 1 11988000 80515 16236 53900 55031 93689 93689 -0.01900371125066158 YSLVIWGCTL 10 Unmodified _YSLVIWGCTL_ 0 0 0 nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2 nc|ENSG00000168398|P30411-2|BDKRB2 nc|ENSG00000168398|P30411-2|BDKRB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.8003540039062 2 577.79936 1153.58417 NaN NaN NaN NaN NaN NaN NaN 45.211 1 45.183 44.683 45.683 -0.028011 0 0 0 0.68184 1 24276 24276 14.838 8.6325 1 80516 7758 53901 55032 93690 93690 0.013518404024353003 YSLYQSPHLL 10 Unmodified _YSLYQSPHLL_ 0 0 0 nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL nc|ENSG00000157927|Q96JH8-1|RADIL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.5487365722656 3 407.548518 1219.62372 NaN NaN NaN NaN NaN NaN NaN 8.6728 1 8.6904 8.1904 9.1904 0.017581 0 0 0 1.0019 1 4314 4314 0.15932 0 1 80517 6552 53902 55033 93691 93691 0.022696836775139673 YSMDEQCRF 9 Unmodified _YSMDEQCRF_ 0 0 0 ENSG00000156140|ENST00000286657|ADAMTS3;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14 ENSG00000156140|ENST00000286657|ADAMTS3;nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 nc|ENSG00000138316|Q8WXS8-2|ADAMTS14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.7338256835938 2 589.733891 1177.45323 0.45963 0.00027106 -2.0038 -0.0011817 -1.5442 -0.00091064 589.7327835957831 82.61 0.37569 76.434 76.232 76.608 -6.1757 31 21 2 0 0 0 0.49272 1 54303 54303 7.9102 0 1 8503200 80518 5039;6433 53903 55034 93692 93692 -0.12839918307918197 YSMEFKWKRAQ 11 Unmodified _YSMEFKWKRAQ_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.251220703125 3 491.915095 1472.72345 0.7757 0.00038158 1.9873 0.00097758 2.763 0.0013592 491.9161546924787 28.919 0.15789 28.857 28.742 28.9 -0.062159 11 6 2 0 0 0 0.73114 1 14922 14922 1.3296 0 1 5446500 + 80519 23685 53904 55035 93693 93693 0.006001780198175766 YSMKHLRF 8 Unmodified _YSMKHLRF_ 0 0 0 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 ENSG00000138646|ENST00000264350|HERC5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 541.2845458984375 2 541.284211 1080.55387 NaN NaN NaN NaN NaN NaN NaN 83.193 1 83.257 82.757 83.757 0.063171 0 0 0 0.97348 1 46024 46024 5.7604 0 1 80520 5078 53905 55036 93694 93694 0.016815265279319647 YSMPSRNL 8 Unmodified _YSMPSRNL_ 0 0 0 ENST00000464067.1_1_11:124626431-124626668:-|nuORF;ENST00000485116.5_1_11:124623544-124626668:-|nuORF;ENSG00000149564|ENST00000278927|ESAM ENST00000464067.1_1_11:124626431-124626668:-|nuORF ENST00000464067.1_1_11:124626431-124626668:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 484.2366943359375 2 484.236927 966.459301 NaN NaN NaN NaN NaN NaN NaN 84.214 1 83.714 83.214 84.214 -0.49961 0 0 0 0.97444 1 46087 46087 4.756 0 1 80521 6020 53906 55037 93695 93695 -0.025270320140862168 YSMPSTHAM 9 Oxidation (M) _YSMPSTHAM(Oxidation (M))_ YSMPSTHAM(1) YSM(-46)PSTHAM(46) 0 0 1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 520.7135620117188 2 520.712427 1039.4103 0.63354 0.00032989 -0.14386 -7.4909E-05 0.48968 0.00025498 520.7124672570902 28.169 0.41961 25.021 24.826 25.246 -3.1482 29 22 2 0 0 0 0.026094 1 15674 15674 57.471 42.89 2 4308400 80522 3974 53907 55038 93696 93696 710 -0.107826883653388 YSMPSTHAM 9 Unmodified _YSMPSTHAM_ 0 0 0 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 ENSG00000126821|ENST00000247225|SGPP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 512.715576171875 2 512.71497 1023.41539 0.38929 0.00019959 -0.79367 -0.00040693 -0.40438 -0.00020733 512.7148624295176 38.779 0.28735 34.328 34.251 34.538 -4.4509 36 17 3 0 0 0 0.010877 1 22918 22918 77.984 51.643 1 18874000 80523 3974 53907 55039 93697 93697 -0.09538384502707231 YSMTLFTY 8 Unmodified _YSMTLFTY_ 0 0 0 ENSG00000197532|ENST00000641622|OR6Y1 ENSG00000197532|ENST00000641622|OR6Y1 ENSG00000197532|ENST00000641622|OR6Y1 MSMS AL20221201_MKP_PDAC_01 4 513.238525390625 2 513.236061 1024.45757 NaN NaN NaN NaN NaN NaN NaN 41.21 1 36.602 36.102 37.102 -4.6079 0 0 0 0.63034 1 24711 24711 32.117 2.2764 1 80524 9965 53908 55040 93698 93698 -0.05368085822692592 YSNADIYLF 9 Unmodified _YSNADIYLF_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.1115112304688 2 553.263665 1104.51278 0.87982 0.00048677 -0.63093 -0.00034907 0.24889 0.0001377 553.2635454589443 74.685 0.40903 74.21 73.997 74.406 -0.47588 36 16 3 0 0 0 0.54444 2 40823 40823;40937 4.756 0 1 2183700 80525 2112 53909 55041 93699;93700 93699 -0.035299560305929845 YSNDATCYYG 10 Unmodified _YSNDATCYYG_ 0 0 0 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1455383300781 3 386.146573 1155.41789 NaN NaN NaN NaN NaN NaN NaN 73.192 1 73.192 72.692 73.692 0 0 0 0 0.99091 1 40745 40745 1.9064 0.25375 1 + 80526 21776 53910 55042 93701 93701 -0.15360257564088897 YSNDATCYYG 10 Unmodified _YSNDATCYYG_ 0 0 0 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.1482849121094 3 386.146573 1155.41789 NaN NaN NaN NaN NaN NaN NaN 73.379 1 73.379 72.879 73.879 0 0 0 0 0.99091 1 40851 40851 0.69767 0 1 + 80527 21776 53910 55042 93702 93702 -0.15360257564088897 YSNDATCYYG 10 Unmodified _YSNDATCYYG_ 0 0 0 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 REV__nc|ENSG00000163518|Q96PJ5-2|FCRL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 386.4804382324219 3 386.146573 1155.41789 0.70892 0.00027375 0.6292 0.00024296 1.3381 0.00051671 386.48091401575516 73.758 0.43866 73.282 73.066 73.504 -0.47588 33 20 2 0 0 0 0.71123 1 40329 40329 0.69767 0 1 1218000 + 80528 21776 53910 55042 93703 93703 -0.15360257564088897 YSNHDELCL 9 Unmodified _YSNHDELCL_ 0 0 0 REV__nc|ENSG00000182585|Q6UW88-7|EPGN REV__nc|ENSG00000182585|Q6UW88-7|EPGN MSMS AL20221201_MKP_PDAC_01 4 365.5487060546875 3 365.158813 1092.45461 NaN NaN NaN NaN NaN NaN NaN 44.088 1 39.323 38.823 39.823 -4.7648 0 0 0 0.81961 1 26868 26868 5.2969 1.3525 1 + 80529 23282 53911 55043 93704 93704 -0.08791960947519328 YSNIKDFA 8 Unmodified _YSNIKDFA_ 0 0 0 REV__ENSG00000131018|ENST00000367255|SYNE1 REV__ENSG00000131018|ENST00000367255|SYNE1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 959.4722290039062 1 957.467623 956.460347 0.81316 0.00077857 0.11876 0.00011371 0.93192 0.00089228 957.467629077594 69.153 0.53828 62.977 62.705 63.243 -6.1757 68 29 3 0 0 0 0.61462 1 45088 45088 24.674 0 1 84016000 + 80530 19763 53912 55044 93705 93705 -0.01962494373537993 YSNLDDKLFI 10 Unmodified _YSNLDDKLFI_ 0 0 0 ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 ENSG00000221866|ENST00000321063|PLXNA4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 614.3175048828125 2 614.316428 1226.6183 0.4919 0.00030218 0.57478 0.0003531 1.0667 0.00065528 614.3168384629473 65.019 0.32385 64.535 64.36 64.684 -0.48428 34 14 3 0 0 0 0.6606 1 35538 35538 7.2892 0 1 4100200 80531 10555 53913 55045 93706 93706 0.014059600950531603 YSNMKQFIRY 10 Unmodified _YSNMKQFIRY_ 0 0 0 nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3 nc|ENSG00000074370|Q93084-4|ATP2A3 nc|ENSG00000074370|Q93084-4|ATP2A3 MSMS AL20221201_MKP_PDAC_01 4 450.2271423339844 3 450.56054 1348.65979 NaN NaN NaN NaN NaN NaN NaN 84.434 1 78.258 77.758 78.758 -6.1757 0 0 0 0.94014 1 55547 55547 3.3196 0 1 80532 1125 53914 55046 93707 93707 -0.0005918241727158602 YSNPAPLPLDQ 11 Unmodified _YSNPAPLPLDQ_ 0 0 0 ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN;ENST00000529915.1_1_11:58322280-58343350:-|nuORF ENSG00000110031|ENST00000395074|LPXN ENSG00000110031|ENST00000395074|LPXN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.30908203125 2 607.806228 1213.5979 -0.15737 -9.5649E-05 0.74899 0.00045524 0.59162 0.00035959 607.8068774774912 31.627 0.21161 31.657 31.564 31.775 0.030106 25 9 3 0 0 0 0.5229 1 16565 16565 15.248 1.3424 1 4753900 80533 2691 53915 55047 93708 93708 -0.0003521056476074591 YSNRSQIYF 9 Unmodified _YSNRSQIYF_ 0 0 0 nc|ENSG00000175556|Q496Y0-2|LONRF3;ENSG00000175556|ENST00000371628|LONRF3;ENST00000472173.5_1_X:118112321-118146861:+|nuORF;nc|ENSG00000175556|Q496Y0-3|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 nc|ENSG00000175556|Q496Y0-2|LONRF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1369018554688 3 393.192734 1176.55637 1.1346 0.0004461 -1.0293 -0.00040469 0.10531 4.1408E-05 393.19208915432324 39.215 0.34924 34.764 34.565 34.914 -4.4509 31 21 2 0 0 0 0.54213 1 23111 23111 4.897 0 1 9442500 80534 8527 53916 55048 93709 93709 -0.024843465334242865 YSNYWNQGY 9 Unmodified _YSNYWNQGY_ 0 0 0 nc|ENSG00000138668|Q14103-2|HNRNPD;ENSG00000138668|ENST00000313899|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD nc|ENSG00000138668|Q14103-2|HNRNPD MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.7470703125 2 597.74617 1193.47779 NaN NaN NaN NaN NaN NaN NaN 75.488 1 75.011 74.511 75.511 -0.47714 0 0 0 0.84369 1 41324 41324 2.3027 0 1 80535 5082 53917 55049 93710 93710 -0.11121198838509372 YSPDLASGAPP 11 Unmodified _YSPDLASGAPP_ 0 0 0 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 REV__nc|ENSG00000206538|A8MV65-2|VGLL3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.7599487304688 2 537.758746 1073.50294 0.3178 0.0001709 0.94011 0.00050555 1.2579 0.00067645 537.7594179913212 91.821 0.28877 91.34 91.158 91.447 -0.48092 32 19 2 0 0 0 0.57006 1 50172 50172 11.495 4.2055 1 1683000 + 80536 24258 53918 55050 93711 93711 -0.030871440359533153 YSPFRTPYT 9 Unmodified _YSPFRTPYT_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.2802124023438 2 566.277106 1130.53966 1.2356 0.00069971 -0.27072 -0.0001533 0.96492 0.00054641 566.2768459072105 64.767 0.65129 58.591 58.331 58.982 -6.1757 106 36 4 0 0 0 0.23158 1 42069 42069 20.454 1.1966 1 69495000 80537 16088;13807 53919 55051 93712 93712 -0.020388474193850925 YSPHTHHS 8 Unmodified _YSPHTHHS_ 0 0 0 REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 965.4235229492188 1 965.422404 964.415128 1.4308 0.0013813 -0.13448 -0.00012983 1.2963 0.0012515 965.4217657164068 104.6 0.06163 98.419 98.376 98.438 -6.1757 4 2 2 0 0 0 0.80975 1 70044 70044 0.79363 0 1 3542500 + 80538 21587 53920 55052 93713 93713 -0.06850300116059316 YSPIFAPPL 9 Unmodified _YSPIFAPPL_ 0 0 0 REV__nc|ENSG00000057657|O75626-2|PRDM1 REV__nc|ENSG00000057657|O75626-2|PRDM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.7803955078125 2 502.776211 1003.53787 1.1431 0.00057475 -0.79978 -0.00040211 0.34337 0.00017264 502.7756559796546 50.494 0.69587 44.955 44.531 45.226 -5.5391 144 44 5 0 0 0 0.39863 1 31419 31419 12.532 0 1 317360000 + 80539 17304 53921 55053 93714 93714 0.036241435626379825 YSPMDVTY 8 Unmodified _YSPMDVTY_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2105102539062 2 488.210043 974.405534 0.17629 8.6064E-05 -3.1713 -0.0015482 -2.995 -0.0014622 488.20851470525355 37.492 0.23544 37.492 37.369 37.604 0 25 12 3 0 0 0 0.63229 1 19936 19936 23.148 9.6405 1 5326600 + 80540 22553 53922 55054 93715 93715 -0.08269249236457199 YSPRIQNLL 9 Unmodified _YSPRIQNLL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2727661132812 2 552.314023 1102.61349 0.57135 0.00031556 0.099348 5.4871E-05 0.6707 0.00037043 552.3141219800865 88.598 0.15623 88.094 88.024 88.18 -0.50423 10 6 2 0 0 0 0.21798 1 48425 48425 2.3027 0.4585 1 278010 80541 1582 53923 55055 93716 93716 0.06629120742945815 YSPRIQNLL 9 Unmodified _YSPRIQNLL_ 0 0 0 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 ENSG00000091136|ENST00000222399|LAMB1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 552.314023 1102.61349 0.10441 5.7669E-05 -0.75219 -0.00041544 -0.64777 -0.00035777 552.3136708307122 88.159 0.067848 88.212 88.165 88.233 0.053352 0.059207 -0.00079289 NaN 5.2307 4 2 2 NaN NaN NaN NaN 0 NaN NaN 0 7601400 80542 1582 53923 55055 0.06629120742945815 YSPSAIVP 8 Unmodified _YSPSAIVP_ 0 0 0 REV__nc|ENSG00000101901|Q9NP73-3|ALG13 REV__nc|ENSG00000101901|Q9NP73-3|ALG13 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.2238464355469 2 417.223811 832.433069 NaN NaN NaN NaN NaN NaN NaN 18.882 1 18.882 18.382 19.382 0 0 0 0 0.97444 1 9415 9415 0.79363 0 1 + 80543 18202 53924 55056 93717 93717 0.010150220860850823 YSPSPSFPS 9 Unmodified _YSPSPSFPS_ 0 0 0 REV__ENSG00000100354|ENST00000454349|TNRC6B REV__ENSG00000100354|ENST00000454349|TNRC6B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 968.4334716796875 1 968.435989 967.428712 0.44185 0.0004279 -0.09929 -9.6156E-05 0.34256 0.00033175 968.4355495093819 71.771 0.29388 71.295 71.121 71.415 -0.47609 17 11 2 0 0 0 0.14602 1 39246 39246 28.487 8.0332 1 607730 + 80544 18050 53925 55057 93718 93718 -0.05630487127461947 YSPSYYWI 8 Unmodified _YSPSYYWI_ 0 0 0 ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7469482421875 2 539.74765 1077.48075 0.98099 0.00052949 -1.6304 -0.00088002 -0.64943 -0.00035053 539.745993980027 54.534 0.36366 54.534 54.352 54.715 0 36 15 3 0 0 0 0.61462 1 30325 30325 24.674 4.2203 1 8624100 80545 369 53926 55058 93719 93719 -0.05489323713709382 YSPSYYWI 8 Unmodified _YSPSYYWI_ 0 0 0 ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 539.7435302734375 2 539.74765 1077.48075 0.69869 0.00037712 -3.9746 -0.0021453 -3.2759 -0.0017681 539.7446029896021 54.76 0.21145 54.76 54.641 54.852 0 13 8 2 0 0 0 0.74163 1 30436 30436 13.508 1.8676 1 7847800 80546 369 53926 55058 93720 93720 -0.05489323713709382 YSPSYYWI 8 Unmodified _YSPSYYWI_ 0 0 0 ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.74658203125 2 539.74765 1077.48075 0.25329 0.00013671 -2.5763 -0.0013906 -2.323 -0.0012539 539.7460935372983 55.365 0.27344 54.887 54.753 55.026 -0.47798 17 12 2 0 0 0 0.6895 1 30036 30036 18.135 1.1927 1 2310100 80547 369 53926 55058 93721 93721 -0.05489323713709382 YSPSYYWI 8 Unmodified _YSPSYYWI_ 0 0 0 ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE ENSG00000007908|ENST00000333360|SELE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7482299804688 2 539.74765 1077.48075 0.18299 9.8771E-05 0.20053 0.00010824 0.38353 0.00020701 539.7476970637213 100.21 0.12558 100.05 99.982 100.11 -0.1575 9 4 3 0 0 0 0.80143 1 54719 54719 5.7604 0 1 854850 80548 369 53926 55058 93722 93722 -0.05489323713709382 YSPVLGSFLI 10 Unmodified _YSPVLGSFLI_ 0 0 0 nc|ENSG00000166473|Q7Z442|PKD1L2;nc|ENSG00000166473|Q7Z442-2|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 nc|ENSG00000166473|Q7Z442|PKD1L2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7415771484375 2 548.307875 1094.6012 -0.088917 -4.8754E-05 0.1596 8.7508E-05 0.070679 3.8754E-05 548.3077467650227 70.015 0.29592 69.536 69.29 69.586 -0.47903 23 13 2 0 0 0 0.22489 1 38311 38311 13.042 0 1 2207200 80549 16354 53927 55059 93723 93723 0.05768084279907271 YSQALLAFGL 10 Unmodified _YSQALLAFGL_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.3009643554688 2 541.797675 1081.5808 0.75991 0.00041172 -0.62141 -0.00033668 0.1385 7.504E-05 541.7974232048435 73.79 1.7766 67.614 66.678 68.454 -6.1757 147 89 2 0 0 0 0.46514 1 48783 48783 18.146 2.2992 1 21865000 80550 5216 53928 55060 93724 93724 0.04326913620070627 YSQFNPTRYNE 11 Unmodified _YSQFNPTRYNE_ 0 0 0 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 473.8830261230469 3 473.549357 1417.62624 -0.07078 -3.3518E-05 0.3011 0.00014258 0.23032 0.00010907 473.8837601784385 61.358 0.21161 60.869 60.798 61.009 -0.48932 17 9 2 0 0 0 0.74046 1 33437 33437 0.45452 0 1 2318400 + 80551 20396 53929 55061 93725 93725 -0.06586512655485421 YSQGQNLY 8 Unmodified _YSQGQNLY_ 0 0 0 REV__ENSG00000115112|ENST00000263707|TFCP2L1;REV__nc|ENSG00000135457|Q12800-2|TFCP2;REV__nc|ENSG00000153560|Q9NZI7-4|UBP1 REV__ENSG00000115112|ENST00000263707|TFCP2L1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.261474609375 2 486.724707 971.43486 -0.52313 -0.00025462 -0.0068766 -3.347E-06 -0.53001 -0.00025797 486.72460681902 30.077 0.26969 30.077 29.953 30.222 0 28 12 3 0 0 0 8.7369 1 15553 15553 0.79363 0 1 6067000 + 80552 18952;20069;21178 53930 55062 93726 93726 -0.05199968895965412 YSQGSGNN 8 Unmodified _YSQGSGNN_ 0 0 0 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 826.33642578125 1 826.332586 825.32531 0.22314 0.00018438 3.9545 0.0032677 4.1776 0.0034521 826.3367903745709 74.492 0.3077 74.492 74.318 74.626 0 18 13 2 0 0 0 0.63229 1 41421 41421 23.148 9.6405 1 717290 + 80553 22082 53931 55063 93727 93727 -0.09433974515286536 YSQGSGNN 8 Unmodified _YSQGSGNN_ 0 0 0 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 1 826.332586 825.32531 0.22314 0.00018438 3.9545 0.0032677 4.1776 0.0034521 826.3367903745709 74.492 0.3077 74.492 74.318 74.626 0 0.0016464 -7.962E-05 NaN 23.148 18 13 2 NaN NaN NaN NaN 0 NaN NaN 0 717290 + 80554 22082 53931 55063 -0.09433974515286536 YSQGSGNN 8 Unmodified _YSQGSGNN_ 0 0 0 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 REV__nc|ENSG00000166105|Q8NCI6-2|GLB1L3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1 826.332586 825.32531 0.28241 0.00023337 4.0758 0.003368 4.3582 0.0036013 826.3361081310582 74.966 0.25676 74.489 74.348 74.605 -0.47714 -0.0016464 2.0633E-05 NaN 23.148 16 10 2 NaN NaN NaN NaN 0 NaN NaN 0 854000 + 80555 22082 53931 55063 -0.09433974515286536 YSQICCKLF 9 Unmodified _YSQICCKLF_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7637329101562 2 552.764463 1103.51437 0.44039 0.00024343 -0.33344 -0.00018432 0.10695 5.9116E-05 552.7642848117405 92.544 0.31184 92.544 92.406 92.718 0 41 19 3 0 0 0 0.43463 1 51175 51175 10.824 0.75 1 718360 80556 7880 53932 55064 93728 93728 -0.033243615378296454 YSQICCKLF 9 Unmodified _YSQICCKLF_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7650756835938 2 552.764463 1103.51437 0.54932 0.00030364 -1.0198 -0.00056371 -0.47048 -0.00026006 552.7644527139273 93.138 0.39986 92.68 92.462 92.862 -0.4574 38 20 3 0 0 0 0.43463 1 50900 50900 10.824 0 1 1173200 80557 7880 53932 55064 93729 93729 -0.033243615378296454 YSQICCKLF 9 Unmodified _YSQICCKLF_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 552.764463 1103.51437 0.44039 0.00024343 -0.33344 -0.00018432 0.10695 5.9116E-05 552.7642848117405 92.544 0.31184 92.544 92.406 92.718 0 -0.068433 0.00025939 NaN 10.824 41 19 3 NaN NaN NaN NaN 0 NaN NaN 0 718360 80558 7880 53932 55064 -0.033243615378296454 YSQICCKLF 9 Unmodified _YSQICCKLF_ 0 0 0 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 ENSG00000169508|ENST00000376414|GPR183 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 552.764463 1103.51437 0.54932 0.00030364 -1.0198 -0.00056371 -0.47048 -0.00026006 552.7644527139273 93.138 0.39986 92.68 92.462 92.862 -0.4574 0.068433 -0.0004994 NaN 10.824 38 20 3 NaN NaN NaN NaN 0 NaN NaN 0 1173200 80559 7880 53932 55064 -0.033243615378296454 YSQPLFVEM 9 Unmodified _YSQPLFVEM_ 0 0 0 REV__nc|ENSG00000168944|Q8N960-2|CEP120 REV__nc|ENSG00000168944|Q8N960-2|CEP120 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 556.8042602539062 2 557.267893 1112.52123 1.4072 0.00078418 1.4832 0.00082653 2.8904 0.0016107 557.2687448461493 64.555 0.78673 58.379 58.036 58.823 -6.1757 82 43 3 0 0 0 0.209 1 42133 42133 7.2892 0 1 32504000 + 80560 22363 53933 55065 93730 93730 -0.030527253855780145 YSQSLWFSSEE 11 Unmodified _YSQSLWFSSEE_ 0 0 0 REV__ENSG00000120498|ENST00000374333|TEX11 REV__ENSG00000120498|ENST00000374333|TEX11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 454.8664855957031 3 454.866464 1361.57756 NaN NaN NaN NaN NaN NaN NaN 17.523 1 17.536 17.036 18.036 0.013865 0 0 0 0.9435 1 8720 8720 0 0 1 + 80561 19247 53934 55066 93731 93731 -0.08876426015217476 YSQVRWSL 8 Unmodified _YSQVRWSL_ 0 0 0 REV__ENST00000255305.10_3_13:21370372-21370918:-|nuORF REV__ENST00000255305.10_3_13:21370372-21370918:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 519.771484375 2 519.771991 1037.52943 0.64122 0.00033329 -0.75111 -0.00039041 -0.10989 -5.7119E-05 519.7707632010073 46.203 0.29179 41.248 41.049 41.341 -4.9549 31 19 2 0 0 0 0.52066 1 28446 28446 32.786 3.7041 1 13679000 + 80562 24913 53935 55067 93732 93732 0.012165896460601289 YSRDEFIGSF 10 Unmodified _YSRDEFIGSF_ 0 0 0 REV__nc|ENSG00000113721|P09619-2|PDGFRB REV__nc|ENSG00000113721|P09619-2|PDGFRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 407.5232543945312 3 407.524261 1219.55095 -0.10907 -4.4448E-05 -2.088 -0.0008509 -2.197 -0.00089535 407.8577164652812 69.681 0.24989 69.202 69.064 69.314 -0.47903 18 10 2 0 0 0 0.71276 1 38108 38108 0.62683 0.12087 1 655480 + 80563 18887 53936 55068 93733 93733 -0.05004070115933246 YSRFELLPED 10 Unmodified _YSRFELLPED_ 0 0 0 REV__nc|ENSG00000183765|O96017-10|CHEK2 REV__nc|ENSG00000183765|O96017-10|CHEK2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5429992675781 3 423.543432 1267.60847 0.6609 0.00027992 -1.5064 -0.00063804 -0.84554 -0.00035812 423.54270194297106 72.901 0.39841 72.425 72.318 72.717 -0.47588 28 17 2 0 0 0 0.72247 1 39898 39898 0.13989 0 1 554380 + 80564 29843 53937 55069 93734 93734 -0.014632279103580004 YSRGHVNP 8 Unmodified _YSRGHVNP_ 0 0 0 REV__nc|ENSG00000106305|Q13155-2|AIMP2 REV__nc|ENSG00000106305|Q13155-2|AIMP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 465.2331848144531 2 465.233033 928.451513 0.33723 0.00015689 0.13417 6.2418E-05 0.4714 0.00021931 465.2330811632223 17.215 0.27556 14.628 14.506 14.781 -2.5866 117 43 3 0 0 0 0.78849 2 8928 8928;9034 9.3474 0 1 29772000 + 80565 18498 53938 55070 93735;93736 93735 -0.015574232193330317 YSRHANKSF 9 Unmodified _YSRHANKSF_ 0 0 0 ENST00000361367.6_1_11:10772580-10772718:+|nuORF ENST00000361367.6_1_11:10772580-10772718:+|nuORF ENST00000361367.6_1_11:10772580-10772718:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.7781372070312 2 555.277972 1108.54139 0.98384 0.0005463 0.31716 0.00017611 1.301 0.00072241 555.2788207735731 81.285 0.73074 80.793 80.641 81.372 -0.49247 53 36 2 0 0 0 0.49272 1 44799 44799 7.9102 2.6133 1 4979500 80566 12184 53939 55071 93737 93737 -0.008537936107813948 YSRILNYLF 9 Unmodified _YSRILNYLF_ 0 0 0 ENST00000482131.1_1_1:35827333-35836274:+|nuORF ENST00000482131.1_1_1:35827333-35836274:+|nuORF ENST00000482131.1_1_1:35827333-35836274:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.8245239257812 2 594.824224 1187.63389 0.095615 5.6874E-05 1.1114 0.00066111 1.2071 0.00071798 594.8248375545336 79.454 0.51331 79.509 79.336 79.849 0.05497 47 19 3 0 0 0 0.014417 2 43877 43877;43978 69.105 9.031 1 84441000 80567 14096 53940 55072 93738;93739 93738 0.04758291402731629 YSRILNYLF 9 Unmodified _YSRILNYLF_ 0 0 0 ENST00000482131.1_1_1:35827333-35836274:+|nuORF ENST00000482131.1_1_1:35827333-35836274:+|nuORF ENST00000482131.1_1_1:35827333-35836274:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.8272705078125 2 594.824224 1187.63389 0.88654 0.00052733 -0.026221 -1.5597E-05 0.86032 0.00051174 594.8240228598015 97.998 0.22156 91.822 91.687 91.908 -6.1757 50 13 5 0 0 0 0.036857 1 64918 64918 51.63 0 1 340850000 80568 14096 53940 55072 93740 93740 0.04758291402731629 YSRPHFLK 8 Unmodified _YSRPHFLK_ 0 0 0 ENST00000283635.7_2_2:87016528-87018429:-|nuORF ENST00000283635.7_2_2:87016528-87018429:-|nuORF ENST00000283635.7_2_2:87016528-87018429:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2896118164062 2 524.290351 1046.56615 NaN NaN NaN NaN NaN NaN NaN 94.246 1 93.825 93.325 94.325 -0.42044 0 0 0 0.97444 1 51494 51494 2.5775 0 1 80569 11428 53941 55073 93741 93741 0.04472886262601605 YSRQPWSE 8 Unmodified _YSRQPWSE_ 0 0 0 REV__nc|ENSG00000133318|O95197-7|RTN3 REV__nc|ENSG00000133318|O95197-7|RTN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 526.7438354492188 2 526.743431 1051.47231 NaN NaN NaN NaN NaN NaN NaN 43.275 1 42.965 42.465 43.465 -0.31039 0 0 0 0.88073 1 23017 23017 19.439 3.5918 1 + 80570 19921 53942 55074 93742 93742 -0.05136877630343406 YSRRFKFL 8 Unmodified _YSRRFKFL_ 0 0 0 REV__ENST00000473637.6_1_17:80559802-80560249:+|nuORF REV__ENST00000473637.6_1_17:80559802-80560249:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.2642822265625 2 558.819276 1115.624 0.83589 0.00046711 0.19551 0.00010925 1.0314 0.00057637 558.8193041928558 79.257 0.20634 78.771 78.663 78.87 -0.48596 14 8 2 0 0 0 8.7369 1 43379 43379 5.7604 0 1 403930 + 80571 27547 53943 55075 93743 93743 0.07081148188035513 YSRRWHFYRRY 11 Unmodified _YSRRWHFYRRY_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 563.9541015625 3 563.955164 1688.84366 NaN NaN NaN NaN NaN NaN NaN 24.067 1 24.067 23.567 24.567 0 0 0 0 0.9435 1 12284 12284 0 0 1 + 80572 23823 53944 55076 93744 93744 0.02679347128446352 YSRRWHFYRRY 11 Unmodified _YSRRWHFYRRY_ 0 0 0 REV__nc|ENSG00000196371|P22083-2|FUT4 REV__nc|ENSG00000196371|P22083-2|FUT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 845.4298095703125 2 845.429107 1688.84366 NaN NaN NaN NaN NaN NaN NaN 93.487 1 93.487 92.987 93.987 0 0 0 0 0.9435 1 51685 51685 0 0 1 + 80573 23823 53944 55076 93745 93745 0.02679347128446352 YSRRWPNRWTK 11 Unmodified _YSRRWPNRWTK_ 0 0 0 REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C REV__nc|ENSG00000177706|Q8IXL6-2|FAM20C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2750854492188 3 517.276014 1548.80621 0.066236 3.4262E-05 -0.35248 -0.00018233 -0.28624 -0.00014807 517.2755423795737 31.625 0.1931 31.496 31.408 31.601 -0.12915 15 7 3 0 0 0 0.74046 1 16453 16453 0.45452 0.046251 1 1756300 + 80574 22999 53945 55077 93746 93746 0.05376255862825019 YSRRWRQWRK 10 Unmodified _YSRRWRQWRK_ 0 0 0 REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 507.9499816894531 3 507.948121 1520.82253 0.47749 0.00024254 0.68312 0.00034699 1.1606 0.00058953 507.94948444852514 59.776 0.18188 59.723 59.634 59.816 -0.053062 11 8 2 0 0 0 0.71981 1 32613 32613 0.69767 0.19171 1 2985100 + 80575 24740 53946 55078 93747 93747 0.08295381819561953 YSRTSCLF 8 Unmodified _YSRTSCLF_ 0 0 0 REV__ENST00000302851.7_1_19:9731931-9732036:-|nuORF REV__ENST00000302851.7_1_19:9731931-9732036:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 488.2445678710938 2 488.731477 975.448402 0.51688 0.00025262 1.5153 0.00074058 2.0322 0.0009932 488.731977242555 53.667 0.2641 53.667 53.506 53.77 0 19 12 2 0 0 0 8.7369 1 29745 29745 8.5933 0 1 2596500 + 80576 25344 53947 55079 93748 93748 -0.04030434388357662 YSRYPPREYR 10 Unmodified _YSRYPPREYR_ 0 0 0 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 462.90185546875 3 462.901954 1385.68403 0.55668 0.00025769 -0.63549 -0.00029417 -0.078804 -3.6478E-05 462.90141366173634 62.413 0.44289 61.925 61.638 62.081 -0.48764 65 20 4 0 0 0 0.67033 1 34033 34033 3.3196 1.8645 1 35148000 80577 8955 53948 55080 93749 93749 0.006617940606020056 YSSCVLPL 8 Unmodified _YSSCVLPL_ 0 0 0 ENST00000284274.4_1_5:14696164-14696332:+|nuORF ENST00000284274.4_1_5:14696164-14696332:+|nuORF ENST00000284274.4_1_5:14696164-14696332:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.2265319824219 2 441.225497 880.43644 NaN NaN NaN NaN NaN NaN NaN 104.05 1 104.05 103.55 104.55 0 0 0 0 0.97444 1 57308 57308 0.79363 0 1 80578 11433 53949 55081 93750 93750 -0.008560511315408803 YSSCWFLLRQ 10 Unmodified _YSSCWFLLRQ_ 0 0 0 ENST00000407426.7_1_2:29147850-29148012:+|nuORF ENST00000407426.7_1_2:29147850-29148012:+|nuORF ENST00000407426.7_1_2:29147850-29148012:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 434.8827209472656 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 17.88 1 15.293 14.793 15.793 -2.5866 0 0 0 0.97302 1 9386 9386 1.7423 0 1 80579 12945 53950 55082 93751 93751 -0.016068539630396117 YSSCYYDAED 10 Unmodified _YSSCYYDAED_ 0 0 0 REV__nc|ENSG00000278196|P01709|IGLV2-8 REV__nc|ENSG00000278196|P01709|IGLV2-8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.20751953125 2 608.210969 1214.40738 NaN NaN NaN NaN NaN NaN NaN 1.2398 1 1.1665 0.6665 1.6665 -0.07329 0 0 0 1.0061 1 621 621 0 0 1 + 80580 29926 53951 55083 93752 93752 -0.1912428500918395 YSSDSESPRG 10 Unmodified _YSSDSESPRG_ 0 0 0 ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000182768|ENST00000379095|NGRN ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000182768|ENST00000379095|NGRN ENST00000561573.1_1_15:90806992-90815017:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.2532958984375 2 542.730717 1083.44688 0.19007 0.00010316 -1.7164 -0.00093153 -1.5263 -0.00082838 542.7296985151265 76.003 0.26958 75.523 75.369 75.639 -0.47945 14 11 2 0 0 0 0.23926 1 41557 41557 3.2813 0.70383 1 699240 80581 15329;9084 53952 55084 93753 93753 -0.09150396943414307 YSSEYGDYCE 10 Unmodified _YSSEYGDYCE_ 0 0 0 REV__nc|ENSG00000134365|Q92496-2|CFHR4 REV__nc|ENSG00000134365|Q92496-2|CFHR4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.210205078125 2 608.210969 1214.40738 NaN NaN NaN NaN NaN NaN NaN 16.488 1 16.489 15.989 16.989 0.0010548 0 0 0 1.0061 1 8135 8135 0 0 1 + 80582 19980 53953 55085 93754 93754 -0.19124285009138475 YSSFKTHLWW 10 Unmodified _YSSFKTHLWW_ 0 0 0 ENST00000335290.10_1_14:100842832-100847262:+|nuORF ENST00000335290.10_1_14:100842832-100847262:+|nuORF ENST00000335290.10_1_14:100842832-100847262:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 452.2242126464844 3 452.224146 1353.65061 0.063851 2.8875E-05 0.20597 9.3145E-05 0.26982 0.00012202 452.22425500894747 31.595 0.19392 31.493 31.381 31.575 -0.10269 12 7 2 0 0 0 0.71123 1 16440 16440 0.69767 0 1 2113300 80583 11897 53954 55086 93755 93755 -0.012072077112861734 YSSFKTHLWW 10 Unmodified _YSSFKTHLWW_ 0 0 0 ENST00000335290.10_1_14:100842832-100847262:+|nuORF ENST00000335290.10_1_14:100842832-100847262:+|nuORF ENST00000335290.10_1_14:100842832-100847262:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 452.5575866699219 3 452.224146 1353.65061 0.16441 7.435E-05 -1.5298 -0.0006918 -1.3654 -0.00061745 452.5575569308488 31.47 0.13124 31.5 31.432 31.564 0.030104 9 5 2 0 0 0 0.71123 1 16493 16493 0.69767 0 1 1513800 80584 11897 53954 55086 93756 93756 -0.012072077112861734 YSSFRSVR 8 Unmodified _YSSFRSVR_ 0 0 0 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 501.2616882324219 2 501.261791 1000.50903 NaN NaN NaN NaN NaN NaN NaN 21.567 1 21.567 21.067 22.067 0 0 0 0 0.96606 1 10922 10922 7.2892 0.56607 1 80585 5493 53955 55087 93757 93757 0.008794189862442181 YSSGRRFG 8 Unmodified _YSSGRRFG_ 0 0 0 REV__ENSG00000181555|ENST00000409792|SETD2 REV__ENSG00000181555|ENST00000409792|SETD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.2331237792969 2 465.233033 928.451513 -0.65854 -0.00030637 0.61968 0.0002883 -0.038853 -1.8076E-05 465.23332335659876 16.938 0.18782 16.939 16.81 16.997 0.0010548 161 58 3 0 0 0 0.80676 1 8325 8325 2.5775 0 1 3316600 + 80586 23211 53956 55088 93758 93758 -0.015574232193330317 YSSILGTDIL 10 Unmodified _YSSILGTDIL_ 0 0 0 ENSG00000134294|ENST00000256689|SLC38A2;nc|ENSG00000134294|Q96QD8-2|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 ENSG00000134294|ENST00000256689|SLC38A2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.2929077148438 2 541.292422 1080.57029 NaN NaN NaN NaN NaN NaN NaN 47.639 1 47.639 47.139 48.139 0 0 0 0 0.80293 1 26089 26089 19.257 8.4331 1 80587 4587 53957 55089 93759 93759 0.03322886175010353 YSSLCDKQ 8 Unmodified _YSSLCDKQ_ 0 0 0 nc|ENSG00000125388|P32298-3|GRK4;nc|ENSG00000125388|P32298-4|GRK4;nc|ENSG00000125388|P32298-2|GRK4;ENSG00000125388|ENST00000398052|GRK4 nc|ENSG00000125388|P32298-3|GRK4 nc|ENSG00000125388|P32298-3|GRK4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 472.2138977050781 2 472.213117 942.411682 0.61615 0.00029096 0.96134 0.00045396 1.5775 0.00074491 472.2135351226854 47.456 0.31053 47.456 47.269 47.579 0 33 13 3 0 0 0 0.79783 1 25927 25927 7.9102 0 1 9387000 80588 3846 53958 55090 93760 93760 -0.061827310049238804 YSSMDAFWQEG 11 Unmodified _YSSMDAFWQEG_ 0 0 0 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 ENSG00000166224|ENST00000373202|SGPL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 440.8011779785156 3 440.844894 1319.51285 NaN NaN NaN NaN NaN NaN NaN 7.2207 1 7.1291 6.6291 7.6291 -0.09156 0 0 0 0.9435 1 3553 3553 0 0 1 80589 7454 53959 55091 93761 93761 -0.13412324092905692 YSSRLSFSCP 10 Unmodified _YSSRLSFSCP_ 0 0 0 REV__ENST00000412352.6_1_12:31800180-31814885:+|nuORF REV__ENST00000412352.6_1_12:31800180-31814885:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 573.7632446289062 2 573.766049 1145.51754 1.3703 0.00078622 -1.7477 -0.0010028 -0.37745 -0.00021657 573.764069844292 50.081 0.64582 50.033 49.665 50.31 -0.048824 95 31 4 0 0 0 0.56348 1 27138 27138 13.042 2.2185 1 17749000 + 80590 26723 53960 55092 93762 93762 -0.04939395159453852 YSSSDDDYSL 10 Unmodified _YSSSDDDYSL_ 0 0 0 ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 ENSG00000186566|ENST00000591680|GPATCH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 385.4869689941406 3 384.484019 1150.43023 0.83674 0.00032171 0.10613 4.0807E-05 0.94287 0.00036252 384.48422720065815 39.801 0.30843 35.271 35.062 35.371 -4.5294 45 19 4 0 0 0 0.71123 1 23649 23649 0.69767 0 1 17537000 80591 9484 53961 55093 93763 93763 -0.13896942620044683 YSSSLLAA 8 Unmodified _YSSSLLAA_ 0 0 0 ENST00000254799.10_1_4:71686463-71686556:-|nuORF ENST00000254799.10_1_4:71686463-71686556:-|nuORF ENST00000254799.10_1_4:71686463-71686556:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 811.4186401367188 1 811.41961 810.412334 0.64452 0.00052297 -0.54434 -0.00044169 0.10017 8.1282E-05 811.4194342103862 54.352 0.37315 54.352 54.132 54.505 0 25 16 2 0 0 0 0.5284 1 30234 30234 32.117 0 1 2021200 80592 11166 53962 55094 93764 93764 -0.0004556829355806258 YSSSLPFLF 9 Unmodified _YSSSLPFLF_ 0 0 0 ENST00000450602.6_1_X:148622209-148627018:+|nuORF ENST00000450602.6_1_X:148622209-148627018:+|nuORF ENST00000450602.6_1_X:148622209-148627018:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.771240234375 2 530.771126 1059.5277 0.36607 0.0001943 0.61507 0.00032646 0.98114 0.00052076 530.7715371241766 91.06 0.35123 90.565 90.429 90.78 -0.49458 32 16 3 0 0 0 0.54444 1 49867 49867 4.756 0 1 1047000 80593 13511 53963 55095 93765 93765 0.00031535837410956447 YSSTLWIGL 9 Unmodified _YSSTLWIGL_ 0 0 0 ENSG00000011028|ENST00000303375|MRC2 ENSG00000011028|ENST00000303375|MRC2 ENSG00000011028|ENST00000303375|MRC2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 520.7501831054688 2 520.276575 1038.5386 1.0785 0.00056114 -0.79845 -0.00041542 0.2801 0.00014573 520.2761429047391 54.622 0.2794 54.622 54.462 54.741 0 24 11 3 0 0 0 0.18118 1 30248 30248 12.532 0 1 3296600 80594 432 53964 55096 93766 93766 0.020869382117098212 YSSTNLDCL 9 Unmodified _YSSTNLDCL_ 0 0 0 REV__ENSG00000118496|ENST00000237281|FBXO30 REV__ENSG00000118496|ENST00000237281|FBXO30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 508.2232055664062 2 508.223682 1014.43281 -0.35394 -0.00017988 -1.3111 -0.00066634 -1.665 -0.00084622 508.2228476929653 48.658 0.29645 48.658 48.511 48.808 0 24 13 2 0 0 0 0.32871 1 26719 26719 15.847 0 1 2400100 + 80595 19154 53965 55097 93767 93767 -0.07382765696070237 YSSTRGISQL 10 Unmodified _YSSTRGISQL_ 0 0 0 ENSG00000196313|ENST00000434423|POM121;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121;nc|ENSG00000272391|A8CG34|POM121C;ENSG00000272391|ENST00000615331|POM121C;ENST00000479864.1_1_7:75054840-75066915:-|nuORF ENSG00000196313|ENST00000434423|POM121 ENSG00000196313|ENST00000434423|POM121 MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.2920532226562 2 556.290745 1110.56694 0.70458 0.00039195 0.64737 0.00036012 1.352 0.00075208 556.2910240475408 67.9 0.83775 61.725 61.305 62.143 -6.1757 109 48 3 0 0 0 0.38092 1 44292 44292 22.736 0 1 103280000 80596 9796 53966 55098 93768 93768 0.016076361210025425 YSTEAEFEE 9 Unmodified _YSTEAEFEE_ 0 0 0 ENST00000515119.5_1_4:3517776-3534065:-|nuORF;LRPAP1|p.E303Gfs*13|1|0.33|ENSG00000163956|chr4:3514849-3514855|AGCTTCT/-|frameshift_variant;ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1 ENST00000515119.5_1_4:3517776-3534065:-|nuORF ENST00000515119.5_1_4:3517776-3534065:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.71923828125 2 552.722027 1103.4295 NaN NaN NaN NaN NaN NaN NaN 34.886 1 34.886 34.386 35.386 0 0 0 0 0.46757 1 18414 18414 16.942 4.4107 1 80597 7106 53967 55099 93769 93769 -0.11807737269077734 YSTFMREKH 9 Unmodified _YSTFMREKH_ 0 0 0 ENST00000590930.5_1_10:101949357-101952352:-|nuORF ENST00000590930.5_1_10:101949357-101952352:-|nuORF ENST00000590930.5_1_10:101949357-101952352:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7882080078125 2 599.787315 1197.56008 -0.49604 -0.00029752 1.2912 0.00077442 0.79511 0.0004769 599.7885031792996 21.321 0.34292 21.321 21.154 21.497 0 155 49 4 0 0 0 0.1773 2 10731 10731;10831 25.399 4.9457 1 16234000 80598 15694 53968 55100 93770;93771 93770 -0.030800000312410702 YSTFMREKH 9 Unmodified _YSTFMREKH_ 0 0 0 ENST00000590930.5_1_10:101949357-101952352:-|nuORF ENST00000590930.5_1_10:101949357-101952352:-|nuORF ENST00000590930.5_1_10:101949357-101952352:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 599.787315 1197.56008 -0.23843 -0.00014301 2.1987 0.0013187 1.9603 0.0011757 599.7887731388569 21.213 0.24338 21.242 21.138 21.381 0.028357 -0.039535 0.00081064 NaN 25.399 20 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2432400 80599 15694 53968 55100 -0.030800000312410702 YSTGMIHLL 9 Unmodified _YSTGMIHLL_ 0 0 0 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 ENSG00000171428|ENST00000307719|NAT1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.76904296875 2 517.770603 1033.52665 NaN NaN NaN NaN NaN NaN NaN 55.469 1 54.991 54.491 55.491 -0.47798 0 0 0 0.6032 1 30089 30089 12.532 0 1 80600 8096 53969 55101 93772 93772 0.011229981968881475 YSTKEELNQNF 11 Unmodified _YSTKEELNQNF_ 0 0 0 REV__ENSG00000100557|ENST00000216445|CCDC198 REV__ENSG00000100557|ENST00000216445|CCDC198 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 686.8211059570312 2 686.822606 1371.63066 NaN NaN NaN NaN NaN NaN NaN 21.162 1 21.191 20.691 21.691 0.028357 0 0 0 0.9372 1 10731 10731 4.5289 0.58447 1 + 80601 18079 53970 55102 93773 93773 -0.04029048232587229 YSTKLYRF 8 Unmodified _YSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.2894287109375 2 539.290017 1076.56548 0.33839 0.00018249 -0.49408 -0.00026645 -0.15568 -8.3959E-05 539.2895205838189 43.58 0.25612 43.565 43.421 43.677 -0.015667 22 11 3 0 0 0 0.077912 1 23359 23359 115.69 69.671 1 21652000 80602 5973 53971 55103 93774 93774 0.03026046822878925 YSTKLYRF 8 Unmodified _YSTKLYRF_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 539.2906494140625 2 539.290017 1076.56548 0.88273 0.00047605 0.4544 0.00024506 1.3371 0.0007211 539.2902381677893 48.395 0.34374 43.162 42.958 43.302 -5.2339 61 20 4 0 0 0 0.077912 2 30212 30084;30212 115.69 69.671 1 59083000 80603 5973 53971 55103 93775;93776 93776 0.03026046822878925 YSTKLYRFFKY 11 Unmodified _YSTKLYRFFKY_ 0 0 0 ENSG00000148925|ENST00000278174|BTBD10;nc|ENSG00000148925|Q9BSF8-2|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF ENSG00000148925|ENST00000278174|BTBD10 ENSG00000148925|ENST00000278174|BTBD10 MSMS AL20221201_MKP_PDAC_01 4 505.9403991699219 3 505.938005 1514.79219 NaN NaN NaN NaN NaN NaN NaN 77.676 1 71.5 71 72 -6.1757 0 0 0 0.86932 1 50814 50814 4.4062 2.951 1 80604 5973 53972 55104 93777 93777 0.05538165591133293 YSTLVFLPSF 10 Unmodified _YSTLVFLPSF_ 0 0 0 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 ENSG00000188394|ENST00000616002|GPR21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7879638671875 2 587.313158 1172.61176 NaN NaN NaN NaN NaN NaN NaN 44.925 1 44.903 44.403 45.403 -0.022064 0 0 0 0.92825 1 24115 24115 6.7232 2.3939 1 80605 9656 53973 55105 93778 93778 0.032360669343233894 YSTNKELI 8 Unmodified _YSTNKELI_ 0 0 0 ENSG00000115841|ENST00000354545|RMDN2 ENSG00000115841|ENST00000354545|RMDN2 ENSG00000115841|ENST00000354545|RMDN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 484.2598266601562 2 484.258382 966.502212 0.19082 9.2408E-05 1.482 0.00071765 1.6728 0.00081006 484.25883035111116 65.037 0.16971 65.037 64.974 65.143 0 12 7 2 0 0 0 0.77907 1 36294 36294 10.183 1.5901 1 449520 80606 3169 53974 55106 93779 93779 0.017620613149915698 YSTSNIQDA 9 Unmodified _YSTSNIQDA_ 0 0 0 ENST00000514142.5_1_4:186435855-186436095:-|nuORF;ENST00000512380.1_1_4:186435855-186446271:-|nuORF;nc|ENSG00000154553|Q53GG5-3|PDLIM3;ENST00000504011.5_1_4:186435442-186456588:-|nuORF;nc|ENSG00000154553|Q53GG5-2|PDLIM3 ENST00000514142.5_1_4:186435855-186436095:-|nuORF ENST00000514142.5_1_4:186435855-186436095:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 499.7247314453125 2 499.724904 997.435254 NaN NaN NaN NaN NaN NaN NaN 4.7056 1 4.6327 4.1327 5.1327 -0.072869 0 0 0 0.8622 1 2324 2324 0 0 1 80607 14481 53975 55107 93780 93780 -0.06356593966768287 YSTVAFPYQL 10 Unmodified _YSTVAFPYQL_ 0 0 0 REV__nc|ENSG00000116962|P14543-2|NID1 REV__nc|ENSG00000116962|P14543-2|NID1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2518310546875 2 594.800414 1187.58628 0.69787 0.00041509 -0.093141 -5.5401E-05 0.60473 0.00035969 594.8004780335384 72.489 0.27059 72.013 71.918 72.189 -0.47609 19 12 2 0 0 0 0.23862 1 39697 39697 3.9444 0.3479 1 1309500 + 80608 19075 53976 55108 93781 93781 -1.4075880926611717E-05 YSTVKDGLF 9 Unmodified _YSTVKDGLF_ 0 0 0 REV__ENSG00000142798|ENST00000374695|HSPG2 REV__ENSG00000142798|ENST00000374695|HSPG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 515.2671508789062 2 515.266207 1028.51786 0.24783 0.0001277 2.1396 0.0011025 2.3875 0.0012302 515.2673774617091 81.212 0.30246 81.212 81.067 81.37 0 21 14 2 0 0 0 0.53666 1 45092 45092 5.2307 0 1 377350 + 80609 20594 53977 55109 93782 93782 0.004743478320278882 YSTVLNPAF 9 Unmodified _YSTVLNPAF_ 0 0 0 nc|ENSG00000255374|P59539|TAS2R45;ENSG00000255374|ENST00000531678|TAS2R43 nc|ENSG00000255374|P59539|TAS2R45 nc|ENSG00000255374|P59539|TAS2R45 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 506.2630004882812 2 506.260925 1010.5073 NaN NaN NaN NaN NaN NaN NaN 60.687 1 60.198 59.698 60.698 -0.48932 0 0 0 0.7453 1 33050 33050 7.9102 2.1497 1 80610 16587 53978 55110 93783 93783 0.0024636517759972776 YSTYIKEF 8 Unmodified _YSTYIKEF_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 526.2622680664062 2 525.760758 1049.50696 1.3469 0.00070815 0.32016 0.00016833 1.6671 0.00087648 525.7609136849281 96.589 0.85983 90.414 90.069 90.929 -6.1757 86 50 2 0 0 0 0.46494 1 63960 63960 38.151 0 1 28412000 80611 8890 53979 55111 93784 93784 -0.01581054542248239 YSVEVEVSHL 10 Unmodified _YSVEVEVSHL_ 0 0 0 REV__ENSG00000162378|ENST00000294353|ZYG11B REV__ENSG00000162378|ENST00000294353|ZYG11B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.2930908203125 2 581.292953 1160.57135 NaN NaN NaN NaN NaN NaN NaN 92.143 1 91.662 91.162 92.162 -0.48092 0 0 0 1.0061 1 50367 50367 0 0 1 + 80612 21637 53980 55112 93785 93785 -0.002508994560685096 YSVFFYNY 8 Unmodified _YSVFFYNY_ 0 0 0 REV__ENSG00000172594|ENST00000368440|SMPDL3A REV__ENSG00000172594|ENST00000368440|SMPDL3A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7467041015625 2 551.74765 1101.48075 NaN NaN NaN NaN NaN NaN NaN 88.08 1 87.576 87.076 88.076 -0.50423 0 0 0 0.97348 1 48176 48176 5.7604 0.52976 1 + 80613 22663 53981 55113 93786 93786 -0.06593323713718746 YSVILQTL 8 Unmodified _YSVILQTL_ 0 0 0 ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF ENST00000422095.1_3_7:92000906-92025787:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.7743225097656 2 468.773668 935.532783 NaN NaN NaN NaN NaN NaN NaN 86.785 1 86.282 85.782 86.782 -0.50318 0 0 0 0.97444 1 47481 47481 2.8892 0 1 80614 13115 53982 55114 93787 93787 0.06243839700039189 YSVKGHKEII 10 Unmodified _YSVKGHKEII_ 0 0 0 nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10 nc|ENSG00000243667|Q96MX6-2|DNAAF10 nc|ENSG00000243667|Q96MX6-2|DNAAF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8920288085938 3 391.892396 1172.65536 -0.39867 -0.00015624 0.20103 7.8783E-05 -0.19764 -7.7453E-05 391.892479344962 55.741 0.30334 55.672 55.548 55.852 -0.068741 31 15 3 0 0 0 0.34435 1 30286 30286 24.882 4.467 1 11265000 80615 10711 53983 55115 93788 93788 0.07593676431474705 YSVLVRIFN 9 Unmodified _YSVLVRIFN_ 0 0 0 REV__ENSG00000196189|ENST00000368285|SEMA4A REV__ENSG00000196189|ENST00000368285|SEMA4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 555.8193359375 2 555.818941 1109.62333 0.30954 0.00017205 -0.13242 -7.3602E-05 0.17712 9.8445E-05 555.8188696770044 72.807 0.24872 72.848 72.74 72.989 0.041733 18 11 2 0 0 0 0.095405 1 40134 40134 34.102 0 1 2350300 + 80616 23803 53984 55116 93789 93789 0.0729030874831551 YSVNHEMISQF 11 Unmodified _YSVNHEMISQF_ 0 0 0 REV__ENSG00000154229|ENST00000413366|PRKCA REV__ENSG00000154229|ENST00000413366|PRKCA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 677.8077392578125 2 677.808445 1353.60234 0.61806 0.00041893 -3.0702 -0.002081 -2.4522 -0.0016621 677.8064440041293 80.59 0.22638 80.647 80.586 80.812 0.057587 14 8 2 0 0 0 0.56638 1 44562 44562 13.042 0 1 3601500 + 80617 21216 53985 55117 93790 93790 -0.060320694135043595 YSVNLYPY 8 Unmodified _YSVNLYPY_ 0 0 0 REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF REV__ENST00000257177.8_1_1:52889499-52889643:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 509.2817077636719 2 509.74765 1017.48075 -0.30579 -0.00015587 -3.2341 -0.0016486 -3.5399 -0.0018045 509.74592917371115 34.77 0.22811 34.77 34.636 34.864 0 17 11 2 0 0 0 8.7369 1 18391 18391 10.183 1.5901 1 2304600 + 80618 24925 53986 55118 93791 93791 -0.027293237137200776 YSVPARDYL 9 Unmodified _YSVPARDYL_ 0 0 0 ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-2|VCL;nc|ENSG00000035403|P18206-3|VCL ENSG00000035403|ENST00000211998|VCL ENSG00000035403|ENST00000211998|VCL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 542.2789306640625 2 542.277106 1082.53966 NaN NaN NaN NaN NaN NaN NaN 82.613 1 82.613 82.113 83.113 0 0 0 0 0.7243 1 45829 45829 8.5933 0 1 80619 613 53987 55119 93792 93792 0.0016915258061089844 YSVQYIDPR 9 Unmodified _YSVQYIDPR_ 0 0 0 REV__ENSG00000115977|ENST00000409085|AAK1 REV__ENSG00000115977|ENST00000409085|AAK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 570.7872314453125 2 570.787838 1139.56112 0.33811 0.00019299 -1.1704 -0.00066803 -0.83226 -0.00047504 570.7874026827548 51.805 0.20757 51.372 51.305 51.512 -0.43367 18 10 2 0 0 0 0.14 1 27972 27972 29.082 9.8246 1 3230700 + 80620 19018 53988 55120 93793 93793 -0.0030746239067411807 YSVRFESIL 9 Unmodified _YSVRFESIL_ 0 0 0 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 ENSG00000135829|ENST00000367549|DHX9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.3006591796875 2 557.300581 1112.58661 0.51964 0.00028959 0.37411 0.00020849 0.89375 0.00049808 557.3009066416083 59.454 0.19328 58.964 58.855 59.048 -0.49079 13 8 2 0 0 0 0.23158 1 32372 32372 20.454 4.6064 1 1382800 80621 4745 53989 55121 93794 93794 0.03482012131780721 YSVRKGHF 8 Unmodified _YSVRKGHF_ 0 0 0 ENSG00000163221|ENST00000368737|S100A12 ENSG00000163221|ENST00000368737|S100A12 ENSG00000163221|ENST00000368737|S100A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.2654724121094 2 497.266876 992.519199 0.17752 8.8275E-05 -0.28841 -0.00014342 -0.11089 -5.5141E-05 497.26666055724206 34.713 0.4352 34.741 34.561 34.996 0.027401 65 19 5 0 0 0 0.5284 1 18262 18262 32.117 11.663 1 125720000 80622 6967 53990 55122 93795 93795 0.022640267114752533 YSVRTILSSP 10 Unmodified _YSVRTILSSP_ 0 0 0 REV__ENSG00000132323|ENST00000254654|ILKAP REV__ENSG00000132323|ENST00000254654|ILKAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 375.21142578125 3 374.876634 1121.60807 -0.78264 -0.00029339 1.236 0.00046335 0.45338 0.00016996 375.2113591934076 28.214 0.20255 28.214 28.109 28.311 0 24 9 3 0 0 0 0.60478 1 14561 14561 10.899 3.8619 1 1600600 + 80623 19842 53991 55123 93796 93796 0.05213397160491695 YSVRTILSSP 10 Unmodified _YSVRTILSSP_ 0 0 0 REV__ENSG00000132323|ENST00000254654|ILKAP REV__ENSG00000132323|ENST00000254654|ILKAP MSMS AL20221201_MKP_PDAC_01 4 374.8763732910156 3 374.876634 1121.60807 NaN NaN NaN NaN NaN NaN NaN 28.005 1 24.857 24.357 25.357 -3.1482 0 0 0 0.83226 1 15575 15575 10.899 4.1758 1 + 80624 19842 53991 55123 93797 93797 0.05213397160491695 YSVSDAVATY 10 Unmodified _YSVSDAVATY_ 0 0 0 ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133235217-133253139:-|nuORF;ENST00000539215.5_1_12:133249167-133250211:-|nuORF ENSG00000177084|ENST00000320574|POLE ENSG00000177084|ENST00000320574|POLE MSMS AL20221201_MKP_PDAC_01 4 538.2645263671875 2 538.250754 1074.48696 NaN NaN NaN NaN NaN NaN NaN 57.819 1 51.792 51.292 52.292 -6.0275 0 0 0 0.66657 1 37002 37002 18.146 0.011366 1 80625 8655 53992 55124 93798 93798 -0.047308502728583335 YSVSESPFF 9 Unmodified _YSVSESPFF_ 0 0 0 ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP ENSG00000099812|ENST00000215582|MISP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 531.7416381835938 2 531.742565 1061.47058 NaN NaN NaN NaN NaN NaN NaN 77.359 1 76.877 76.377 77.377 -0.4826 0 0 0 0.82396 1 42350 42350 4.756 1.7608 1 80626 1710 53993 55125 93799 93799 -0.05769931438931053 YSVSKTCLSW 10 Unmodified _YSVSKTCLSW_ 0 0 0 REV__ENSG00000116213|ENST00000270708|WRAP73 REV__ENSG00000116213|ENST00000270708|WRAP73 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.2844848632812 2 587.284074 1172.5536 0.09204 5.4053E-05 1.3217 0.00077624 1.4138 0.0008303 587.2840961914256 44.818 0.21705 44.796 44.718 44.935 -0.022068 13 10 2 0 0 0 0.13391 1 24069 24069 41.84 5.7126 1 6799100 + 80627 19030 53994 55126 93800 93800 -0.025779379826190052 YSVSLLGSPTF 11 Unmodified _YSVSLLGSPTF_ 0 0 0 ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF ENST00000375050.5_1_6:32153594-32154113:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 585.8038940429688 2 585.805697 1169.59684 0.17088 0.0001001 -0.16572 -9.7081E-05 0.0051577 3.0214E-06 585.8055111481997 54.962 0.38005 54.962 54.79 55.17 0 45 16 4 0 0 0 0.39949 1 30475 30475 21.537 2.28 1 22904000 80628 12469 53995 55127 93801 93801 0.01882575066338177 YSVTCLKI 8 Unmodified _YSVTCLKI_ 0 0 0 REV__ENSG00000163161|ENST00000285398|ERCC3 REV__ENSG00000163161|ENST00000285398|ERCC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 463.7540283203125 2 463.754421 925.494289 0.61012 0.00028294 0.07652 3.5486E-05 0.68664 0.00031843 463.7543035086397 82.721 0.44161 76.545 76.305 76.747 -6.1757 30 25 2 0 0 0 0.65867 1 54498 54498 20.871 5.103 1 11551000 + 80629 21733 53996 55128 93802 93802 0.028562107938682857 YSVTLRIL 8 Unmodified _YSVTLRIL_ 0 0 0 REV__ENST00000485344.6_1_2:240900539-240929534:-|nuORF REV__ENST00000485344.6_1_2:240900539-240929534:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 964.5866088867188 1 964.582593 963.575317 1.4504 0.001399 1.3396 0.0012922 2.79 0.0026912 964.5841500085652 104.63 0.078438 98.454 98.398 98.476 -6.1757 6 3 2 0 0 0 0.80975 1 70054 70054 0.79363 0 1 4734500 + 80630 27777 53997 55129 93803 93803 0.09207234828284072 YSVVRQSLNME 11 Unmodified _YSVVRQSLNME_ 0 0 0 REV__ENSG00000150990|ENST00000308736|DHX37 REV__ENSG00000150990|ENST00000308736|DHX37 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 442.5562744140625 3 442.555455 1324.64454 0.59438 0.00026305 0.91706 0.00040585 1.5114 0.0006689 442.5557569816781 74.189 0.29018 74.233 74.074 74.364 0.043976 33 12 4 0 0 0 0.72131 1 40904 40904 2.2527 0.16876 1 2819400 + 80631 21044 53998 55130 93804 93804 -0.004800940051154612 YSVWTLPH 8 Unmodified _YSVWTLPH_ 0 0 0 ENST00000273610.3_1_3:48599595-48600222:-|nuORF ENST00000273610.3_1_3:48599595-48600222:-|nuORF ENST00000273610.3_1_3:48599595-48600222:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7574768066406 2 501.75581 1001.49707 1.0064 0.00050496 0.068331 3.4286E-05 1.0747 0.00053925 501.7559312223381 54.856 0.41996 48.99 48.779 49.199 -5.8653 47 25 2 0 0 0 0.5284 1 34778 34778 32.117 1.8922 1 23373000 80632 11380 53999 55131 93805 93805 -0.0036219775695371936 YSVWVGGS 8 Unmodified _YSVWVGGS_ 0 0 0 ENSG00000188219|ENST00000683005|POTEE;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000196604|ENST00000409914|POTEF ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF ENSG00000196604|ENST00000409914|POTEF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 855.4093017578125 1 854.404295 853.397018 -0.05392 -4.6069E-05 -0.038532 -3.2922E-05 -0.092451 -7.8991E-05 854.4039657052838 57.323 0.29597 56.833 56.75 57.046 -0.48974 19 13 2 0 0 0 0.80676 1 31219 31219 2.5775 2.5775 1 1096600 80633 9641;9849 54000 55132 93806 93806 -0.035544350907457556 YSVYFLIL 8 Unmodified _YSVYFLIL_ 0 0 0 ENSG00000173638|ENST00000311124|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1 ENSG00000173638|ENST00000311124|SLC19A1 ENSG00000173638|ENST00000311124|SLC19A1 MSMS AL20221201_MKP_PDAC_01 4 509.2860412597656 2 509.286411 1016.55827 NaN NaN NaN NaN NaN NaN NaN 80.675 1 74.499 73.999 74.999 -6.1757 0 0 0 0.63034 1 52933 52933 32.117 5.8488 1 80634 8350 54001 55133 93807 93807 0.05065314222474626 YSWASAAI 8 Unmodified _YSWASAAI_ 0 0 0 ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENST00000589613.1_1_17:40761741-40762767:+|nuORF ENST00000589613.1_1_17:40761741-40762767:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 868.4189453125 1 868.419945 867.412668 0.91996 0.00079891 0.9575 0.00083151 1.8775 0.0016304 868.4200323454535 70.884 0.40491 64.708 64.496 64.9 -6.1757 33 20 2 0 0 0 0.31612 2 46239 46239;46364 53.576 13.127 1 35105000 80635 15673 54002 55134 93808;93809 93808 -0.026341485737361836 YSWPLLPML 9 Unmodified _YSWPLLPML_ 0 0 0 ENST00000600534.1_1_19:59084484-59085060:+|nuORF ENST00000600534.1_1_19:59084484-59085060:+|nuORF ENST00000600534.1_1_19:59084484-59085060:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 373.8686218261719 3 373.868423 1118.58344 -0.56126 -0.00020984 0.69369 0.00025935 0.13243 4.9512E-05 373.86872747475365 17.914 0.23041 17.927 17.791 18.021 0.013865 48 34 2 0 0 0 0.59218 1 8941 8941 2.4985 1.5362 1 1001300 80636 15799 54003 55135 93810 93810 0.02889045753386199 YSWPLLPML 9 Unmodified _YSWPLLPML_ 0 0 0 ENST00000600534.1_1_19:59084484-59085060:+|nuORF ENST00000600534.1_1_19:59084484-59085060:+|nuORF ENST00000600534.1_1_19:59084484-59085060:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 373.8680725097656 3 373.868423 1118.58344 0.039952 1.4937E-05 0.37118 0.00013877 0.41114 0.00015371 373.86847572853003 17.944 0.41137 17.95 17.741 18.152 0.0060463 51 27 2 0 0 0 0.59218 1 9006 9006 0.96228 0.18574 1 1092700 80637 15799 54003 55135 93811 93811 0.02889045753386199 YSWQTDWL 8 Unmodified _YSWQTDWL_ 0 0 0 ENST00000232375.7_1_3:48555735-48555987:-|nuORF ENST00000232375.7_1_3:48555735-48555987:-|nuORF ENST00000232375.7_1_3:48555735-48555987:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.7493896484375 2 549.748182 1097.48181 0.66019 0.00036294 1.0334 0.0005681 1.6936 0.00093104 549.7488737190017 59.891 1.05 59.891 59.693 60.743 0 120 47 5 0 0 0 0.76266 1 33416 33416 11.64 11.64 1 690030000 80638 11073 54004 55136 93812 93812 -0.06303109344821678 YSWTEDTEF 9 Unmodified _YSWTEDTEF_ 0 0 0 ENST00000495056.2_1_2:99342463-99342634:-|nuORF ENST00000495056.2_1_2:99342463-99342634:-|nuORF ENST00000495056.2_1_2:99342463-99342634:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.1612854003906 3 393.160988 1176.46113 0.34229 0.00013457 1.4496 0.00056994 1.7919 0.00070452 393.1616106503414 38.941 0.20056 38.941 38.811 39.012 0 13 8 2 0 0 0 0.58466 1 20872 20872 1.1933 0.41681 1 984360 80639 14346 54005 55137 93813 93813 -0.12003744515163817 YSYAAMPWPVR 11 Unmodified _YSYAAMPWPVR_ 0 0 0 REV__ENST00000515587.1_1_5:271739-272994:+|nuORF REV__ENST00000515587.1_1_5:271739-272994:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 671.7835083007812 2 670.82644 1339.63833 0.72292 0.00048496 0.61217 0.00041066 1.3351 0.00089562 670.8279585520954 49.502 0.19577 49.11 49.022 49.218 -0.3923 19 9 3 0 0 0 0.65846 1 26631 26631 8.1555 0.54658 1 3678100 + 80640 28220 54006 55138 93814 93814 -0.017905674460280352 YSYASAATTF 10 Unmodified _YSYASAATTF_ 0 0 0 REV__nc|ENSG00000088766|Q9UJA2-2|CRLS1 REV__nc|ENSG00000088766|Q9UJA2-2|CRLS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.7484130859375 2 541.245472 1080.47639 -0.26182 -0.00014171 -0.12303 -6.659E-05 -0.38485 -0.0002083 541.2449750611861 20.826 0.30461 20.826 20.55 20.855 0 36 22 2 0 0 0 0.24012 1 10357 10357 0 0 1 1253900 + 80641 17809 54007 55139 93815 93815 -0.060628329273185955 YSYASLITF 9 Unmodified _YSYASLITF_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 532.8291015625 2 532.768583 1063.52261 0.80611 0.00042947 0.5423 0.00028892 1.3484 0.00071839 532.768880102475 80.918 0.49577 80.978 80.764 81.26 0.059929 49 19 3 0 0 0 0.20528 1 44648 44648 4.756 0 1 5904900 80642 10161 54008 55140 93816 93816 -0.006607680252045611 YSYASLITF 9 Unmodified _YSYASLITF_ 0 0 0 nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 nc|ENSG00000198815|Q9UPW0-2|FOXJ3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 532.7671508789062 2 532.768583 1063.52261 1.1305 0.00060232 0.66048 0.00035188 1.791 0.0009542 532.7683059924327 89.473 0.89135 83.298 82.865 83.756 -6.1757 122 49 3 0 0 0 0.39863 2 58983 58983;59228 12.532 0 1 59067000 80643 10161 54008 55140 93817;93818 93817 -0.006607680252045611 YSYAYNSIF 9 Unmodified _YSYAYNSIF_ 0 0 0 ENSG00000154485|ENST00000368808|MMP21 ENSG00000154485|ENST00000368808|MMP21 ENSG00000154485|ENST00000368808|MMP21 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.2546997070312 2 564.25584 1126.49713 NaN NaN NaN NaN NaN NaN NaN 101 1 100.95 100.45 101.45 -0.04216 0 0 0 0.82015 1 56107 56107 5.2307 1.6342 1 80644 6329 54009 55141 93819 93819 -0.0610624254763934 YSYEMPSLL 9 Unmodified _YSYEMPSLL_ 0 0 0 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 nc|ENSG00000284723|Q8NH09|OR8S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.259033203125 2 551.759901 1101.50525 1.019 0.00056224 -2.297 -0.0012674 -1.278 -0.00070515 551.7598895884651 80.232 0.99846 79.743 79.296 80.295 -0.48932 112 40 5 0 0 0 0.48152 1 44159 44159 8.5933 0 1 4633400 80645 16616 54010 55142 93820 93820 -0.04144431622512457 YSYLERDL 8 Unmodified _YSYLERDL_ 0 0 0 ENST00000482253.5_1_1:97278336-97278375:+|nuORF ENST00000482253.5_1_1:97278336-97278375:+|nuORF ENST00000482253.5_1_1:97278336-97278375:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 529.757080078125 2 529.761289 1057.50803 NaN NaN NaN NaN NaN NaN NaN 73.106 1 73.106 72.606 73.606 0 0 0 0 0.97348 1 40698 40698 5.7604 0 1 80646 14098 54011 55143 93821 93821 -0.018428401733444844 YSYPTEESLF 10 Unmodified _YSYPTEESLF_ 0 0 0 REV__nc|ENSG00000089159|P49023-3|PXN REV__nc|ENSG00000089159|P49023-3|PXN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.27685546875 2 618.276969 1234.53938 NaN NaN NaN NaN NaN NaN NaN 70.128 1 70.128 69.628 70.628 0 0 0 0 0.91523 1 39076 39076 7.2892 1.0834 1 + 80647 29522 54012 55144 93822 93822 -0.06850311929906638 YSYQVMQWL 9 Unmodified _YSYQVMQWL_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 406.5257263183594 3 406.526837 1216.55868 0.50536 0.00020544 1.1734 0.00047702 1.6788 0.00068246 406.5271061509402 52.098 0.19861 51.664 51.55 51.749 -0.43367 15 9 2 0 0 0 0.54444 1 28132 28132 2.7352 0.23671 1 1597700 80648 14844 54013 55145 93823 93823 -0.04093634119976741 YSYQVMQWL 9 Unmodified _YSYQVMQWL_ 0 0 0 ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF ENST00000527932.1_1_1:46080644-46081380:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 406.526837 1216.55868 -0.10444 -4.2457E-05 2.8258 0.0011487 2.7213 0.0011063 406.5281708233058 51.774 0.26265 51.715 51.592 51.854 -0.058918 0.025517 0.00014897 NaN 2.7352 37 12 4 NaN NaN NaN NaN 0 NaN NaN 0 5554000 80649 14844 54013 55145 -0.04093634119976741 YSYRPYSY 8 Unmodified _YSYRPYSY_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6;LRP6|p.H1524Y|1|0.14|ENSG00000070018|chr12:12121398-12121398|G/A|missense_variant ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.75048828125 2 549.748182 1097.48181 0.66019 0.00036294 1.0334 0.0005681 1.6936 0.00093104 549.7488737190017 59.891 1.05 59.891 59.693 60.743 0 120 47 5 0 0 0 0.76266 1 33519 33519 11.64 0 1 690030000 80650 1015 54014 55146 93824 93824 -0.06303109344821678 YSYRPYSY 8 Unmodified _YSYRPYSY_ 0 0 0 ENSG00000070018|ENST00000261349|LRP6;LRP6|p.H1524Y|1|0.14|ENSG00000070018|chr12:12121398-12121398|G/A|missense_variant ENSG00000070018|ENST00000261349|LRP6 ENSG00000070018|ENST00000261349|LRP6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.749267578125 2 549.748182 1097.48181 0.22857 0.00012566 -1.0097 -0.00055509 -0.78115 -0.00042944 549.747656839949 16.907 0.2292 14.35 14.237 14.467 -2.557 65 38 2 0 0 0 0.80143 1 8857 8857 5.7604 0 1 5058100 80651 1015 54014 55146 93825 93825 -0.06303109344821678 YSYTEGPEF 9 Unmodified _YSYTEGPEF_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;nc|ENSG00000143093|Q5VSL9-4|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 546.7305908203125 2 546.729655 1091.44476 0.17572 9.6071E-05 -1.0577 -0.00057829 -0.88202 -0.00048222 546.7289752495356 69.986 0.58649 69.986 69.598 70.185 0 166 61 4 0 0 0 0.41742 1 38895 38895 11.64 1.4569 1 34430000 80652 5461 54015 55147 93826 93826 -0.09730825681231181 YSYTRNWQS 9 Unmodified _YSYTRNWQS_ 0 0 0 ENST00000563264.1_1_16:29922856-29934675:-|nuORF ENST00000563264.1_1_16:29922856-29934675:-|nuORF ENST00000563264.1_1_16:29922856-29934675:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.2474365234375 2 602.772719 1203.53089 -0.09389 -5.6594E-05 -0.053503 -3.225E-05 -0.14739 -8.8845E-05 602.7729479006197 77.758 0.27966 77.758 77.62 77.9 0 38 13 4 0 0 0 0.21819 1 43298 43298 2.0598 2.0598 1 3018300 80653 15358 54016 55148 93827 93827 -0.06273821055856388 YSYTYIFF 8 Unmodified _YSYTYIFF_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.258056640625 2 552.257851 1102.50115 0.42028 0.0002321 -1.0259 -0.00056657 -0.60563 -0.00033446 552.2576424155376 80.578 0.25537 80.578 80.365 80.62 0 15 11 2 0 0 0 0.80624 1 44697 44697 2.8892 0 1 329060 + 80654 28135 54017 55149 93828 93828 -0.046001530539115265 YSYTYIFF 8 Unmodified _YSYTYIFF_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2576904296875 2 552.257851 1102.50115 0.42127 0.00023265 -0.88439 -0.00048841 -0.46312 -0.00025576 552.257432866647 80.897 0.58835 80.897 80.649 81.238 0 40 29 2 0 0 0 0.80143 1 44871 44871 5.7604 1.0044 1 555420 + 80655 28135 54017 55149 93829 93829 -0.046001530539115265 YSYTYIFF 8 Unmodified _YSYTYIFF_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2573852539062 2 552.257851 1102.50115 NaN NaN NaN NaN NaN NaN NaN 82.916 1 82.916 82.416 83.416 0 0 0 0 0.97444 1 45991 45991 0.79363 0 1 + 80656 28135 54017 55149 93830 93830 -0.046001530539115265 YSYTYIFF 8 Unmodified _YSYTYIFF_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.259521484375 2 552.257851 1102.50115 0.61024 0.00033701 0.049382 2.7272E-05 0.65963 0.00036428 552.2572011054847 85.832 0.60234 85.331 85.074 85.676 -0.5015 59 26 4 0 0 0 0.80143 1 47033 47033 5.7604 1.0044 1 847260 + 80657 28135 54017 55149 93831 93831 -0.046001530539115265 YSYTYIFF 8 Unmodified _YSYTYIFF_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.258056640625 2 552.257851 1102.50115 NaN NaN NaN NaN NaN NaN NaN 88.46 1 87.956 87.456 88.456 -0.50423 0 0 0 0.97348 1 48381 48381 5.7604 0.52976 1 + 80658 28135 54017 55149 93832 93832 -0.046001530539115265 YSYTYIFFYLV 11 Unmodified _YSYTYIFFYLV_ 0 0 0 REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF REV__ENST00000509957.5_1_5:37142364-37158376:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 739.8671875 2 739.865754 1477.71696 1.9065 0.0014105 -1.204 -0.00089083 0.70243 0.0005197 739.8643906137154 100.29 0.1431 100.25 100.12 100.27 -0.036301 15 4 4 0 0 0 0.68427 1 55693 55693 5.7319 2.4505 1 19308000 + 80659 28135 54018 55150 93833 93833 -0.0027943665991188027 YSYTYTRF 8 Unmodified _YSYTYTRF_ 0 0 0 AGBL4|p.P168S|1|0.24|ENSG00000186094|chr1:49045676-49045676|G/A|missense_variant AGBL4|p.P168S|1|0.24|ENSG00000186094|chr1:49045676-49045676|G/A|missense_variant AGBL4|p.P168S|1|0.24|ENSG00000186094|chr1:49045676-49045676|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.7571411132812 2 550.756007 1099.49746 0.78834 0.00043418 0.17418 9.5929E-05 0.96251 0.00053011 550.7558988445686 81.538 0.37582 81.043 80.835 81.211 -0.49451 36 15 3 0 0 0 0.80676 1 44715 44715 2.5775 0.27475 1 1136500 80660 12 54019 55151 93834 93834 -0.04830822827761949 YSYYCIIY 8 Unmodified _YSYYCIIY_ 0 0 0 ENST00000492497.1_1_7:102956426-102956597:-|nuORF ENST00000492497.1_1_7:102956426-102956597:-|nuORF ENST00000492497.1_1_7:102956426-102956597:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7415771484375 2 544.243886 1086.47322 0.67975 0.00036995 -2.8464 -0.0015491 -2.1666 -0.0011792 544.241116646843 54.036 0.51228 54.036 53.797 54.309 0 32 23 2 0 0 0 8.7369 1 29965 29965 10.183 0 1 4348800 80661 14293 54020 55152 93835 93835 -0.06655799305644905 YTAAIYIF 8 Unmodified _YTAAIYIF_ 0 0 0 REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 481.2550354003906 2 481.255111 960.49567 NaN NaN NaN NaN NaN NaN NaN 65.98 1 65.98 65.48 66.48 0 0 0 0 0.97348 1 36801 36801 5.7604 0 1 + 80662 17243 54021 55153 93836 93836 0.01384168154265808 YTAARLHEK 9 Unmodified _YTAARLHEK_ 0 0 0 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 ENSG00000140575|ENST00000268182|IQGAP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 544.7384643554688 2 544.795998 1087.57744 -0.35171 -0.00019161 -0.14466 -7.8813E-05 -0.49638 -0.00027043 544.7956969038214 41.398 0.29758 41.398 41.241 41.538 0 35 14 3 0 0 0 0.18521 1 22413 22413 7.2892 0 1 22729000 80663 5256 54022 55154 93837 93837 0.03715663566094918 YTAEGLYLPAT 11 Unmodified _YTAEGLYLPAT_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-2|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8035278320312 2 599.803154 1197.59175 0.19921 0.00011949 -0.19668 -0.00011797 0.0025361 1.5212E-06 599.8030014227705 53.011 0.54346 53.011 52.836 53.38 0 59 24 3 0 0 0 0.50515 2 29312 29312;29422 16.149 3.3392 1 143710000 80664 1653 54023 55155 93838;93839 93838 0.0008627120371329511 YTAEGLYLPAT 11 Unmodified _YTAEGLYLPAT_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-2|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8037719726562 2 599.803154 1197.59175 0.50872 0.00030513 0.6362 0.0003816 1.1449 0.00068673 599.8035785119012 53.627 0.33758 53.175 53.005 53.342 -0.45173 45 16 3 0 0 0 0.50515 1 28978 28978 16.149 3.9084 1 34648000 80665 1653 54023 55155 93840 93840 0.0008627120371329511 YTAEGLYLPAT 11 Unmodified _YTAEGLYLPAT_ 0 0 0 ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-2|WHRN ENSG00000095397|ENST00000362057|WHRN ENSG00000095397|ENST00000362057|WHRN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 599.803154 1197.59175 0.50872 0.00030513 0.6362 0.0003816 1.1449 0.00068673 599.8035785119012 53.627 0.33758 53.175 53.005 53.342 -0.45173 0.082094 0.00066644 NaN 16.149 45 16 3 NaN NaN NaN NaN 0 NaN NaN 0 34648000 80666 1653 54023 55155 0.0008627120371329511 YTAEQLVYL 9 Unmodified _YTAEQLVYL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.288818359375 2 550.28714 1098.55973 0.67588 0.00037193 0.48157 0.000265 1.1574 0.00063693 550.2873357480148 74.036 0.31036 74.036 73.856 74.166 0 25 14 2 0 0 0 0.1773 1 41185 41185 25.399 16.806 1 1243800 80667 8367 54024 55156 93841 93841 0.01438903520556778 YTAEQLVYL 9 Unmodified _YTAEQLVYL_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 550.2866821289062 2 550.28714 1098.55973 0.73526 0.0004046 -0.60963 -0.00033547 0.12563 6.913E-05 550.2868747749006 74.514 0.32073 74.039 73.887 74.207 -0.47588 21 13 2 0 0 0 0.43463 1 40798 40798 10.824 1.4408 1 860840 80668 8367 54024 55156 93842 93842 0.01438903520556778 YTAGAAYVIS 10 Unmodified _YTAGAAYVIS_ 0 0 0 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 ENSG00000176597|ENST00000326505|B3GNT5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 508.2590026855469 2 508.258382 1014.50221 0.99491 0.00050567 -0.083739 -4.2561E-05 0.91117 0.00046311 508.2582875493627 71.134 0.55945 64.958 64.646 65.206 -6.1757 69 27 3 0 0 0 0.11755 1 46516 46516 43.858 3.901 1 152390000 80669 8607 54025 55157 93843 93843 -0.004459386850044211 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.80859375 2 629.808771 1257.60299 -0.15047 -9.477E-05 0.41098 0.00025884 0.26051 0.00016407 629.8090238301538 69.192 0.57517 68.712 68.465 69.04 -0.48071 99 24 6 0 0 0 0.21511 1 37848 37848 31.268 0.6318 1 188930000 80670 6118 54026 55158 93844 93844 -0.015509067021639567 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.8099365234375 2 629.808771 1257.60299 0.39837 0.0002509 0.41384 0.00026064 0.81221 0.00051154 629.809026906304 60.699 0.26962 60.655 60.495 60.765 -0.043507 25 13 3 0 0 0 0.50515 1 33112 33112 16.149 6.0752 1 6162100 80671 6118 54026 55158 93845 93845 -0.015509067021639567 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.809326171875 2 629.808771 1257.60299 0.3707 0.00023347 -0.18814 -0.00011849 0.18256 0.00011498 629.8084163473677 62.201 0.30737 62.169 62.004 62.311 -0.032787 36 15 3 0 0 0 0.33405 1 33947 33947 24.991 0.97039 1 23334000 80672 6118 54026 55158 93846 93846 -0.015509067021639567 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 629.808837890625 2 629.808771 1257.60299 0.96657 0.00060876 -0.15981 -0.00010065 0.80677 0.00050811 629.8085428387235 64.256 0.338 64.246 64.077 64.415 -0.010529 51 16 4 0 0 0 0.44182 1 35239 35239 19.362 2.4196 1 22549000 80673 6118 54026 55158 93847 93847 -0.015509067021639567 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.8090209960938 2 629.808771 1257.60299 0.83861 0.00052816 0.55743 0.00035107 1.396 0.00087923 629.8089516383692 74.369 0.83348 68.193 67.903 68.737 -6.1757 59 43 2 0 0 0 0.44182 1 48947 48947 19.362 2.4196 1 10619000 80674 6118 54026 55158 93848 93848 -0.015509067021639567 YTAGGLFKESW 11 Unmodified _YTAGGLFKESW_ 0 0 0 ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A ENSG00000151474|ENST00000357447|FRMD4A MULTI-MSMS AL20221201_MKP_PDAC_01 4 629.808837890625 2 629.808771 1257.60299 0.35329 0.0002225 0.034571 2.1773E-05 0.38786 0.00024428 629.8086938772987 78.359 2.0321 72.183 71.17 73.202 -6.1757 343 118 4 0 0 0 0.33405 1 51984 51984 24.991 0.97039 1 130200000 80675 6118 54026 55158 93849 93849 -0.015509067021639567 YTAMKSFMD 9 Unmodified _YTAMKSFMD_ 0 0 0 REV__ENSG00000196072|ENST00000370372|BLOC1S2 REV__ENSG00000196072|ENST00000370372|BLOC1S2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 547.269775390625 2 547.238278 1092.462 0.25789 0.00014113 3.1259 0.0017106 3.3838 0.0018517 547.2397302698947 64.096 0.21738 64.096 63.997 64.214 0 10 8 2 0 0 0 0.19205 1 35760 35760 14.838 3.198 1 484060 + 80676 23782 54027 55159 93850 93850 -0.0805294467143085 YTAMKSFMD 9 Unmodified _YTAMKSFMD_ 0 0 0 REV__ENSG00000196072|ENST00000370372|BLOC1S2 REV__ENSG00000196072|ENST00000370372|BLOC1S2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 547.238278 1092.462 0.40751 0.00022301 2.8643 0.0015675 3.2718 0.0017905 547.2387338530615 64.663 0.12813 64.178 64.102 64.23 -0.48512 0.04118 -0.00019679 NaN 14.838 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 931020 + 80677 23782 54027 55159 -0.0805294467143085 YTANVSDLVW 10 Unmodified _YTANVSDLVW_ 0 0 0 REV__nc|ENSG00000164287|Q86Y33-5|CDC20B REV__nc|ENSG00000164287|Q86Y33-5|CDC20B MULTI-MSMS AL20221201_MKP_PDAC_01 4 584.2866821289062 2 584.287671 1166.56079 1.2259 0.00071628 -0.7853 -0.00045884 0.44061 0.00025744 584.2869797056323 64.572 1.3411 58.397 57.88 59.221 -6.1757 314 73 6 0 0 0 0.6606 1 42315 42315 7.2892 7.2892 1 2635600000 + 80678 29750 54028 55160 93851 93851 -0.015828821105287716 YTARFSRF 8 Unmodified _YTARFSRF_ 0 0 0 ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D ENSG00000144231|ENST00000272645|POLR2D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 524.271728515625 2 524.272158 1046.52976 -0.13281 -6.963E-05 -0.99151 -0.00051982 -1.1243 -0.00058945 524.2714386708295 35.569 0.15095 35.594 35.494 35.645 0.024971 11 6 2 0 0 0 0.50364 1 18817 18817 34.402 11.253 1 2049400 80679 5594 54029 55161 93852 93852 0.008360093659121048 YTASIDPLKI 10 Unmodified _YTASIDPLKI_ 0 0 0 REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A REV__nc|ENSG00000082269|Q9P2D6-3|FAM135A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.8173217773438 2 560.816064 1119.61758 0.68638 0.00038493 -1.0787 -0.00060496 -0.39233 -0.00022003 560.8153620368925 59.952 0.62974 59.952 59.716 60.345 0 94 28 5 0 0 0 0.60623 1 33619 33619 10.824 2.2306 1 278490000 + 80680 29516 54030 55162 93853 93853 0.06255165445986677 YTAWLPLTV 9 Unmodified _YTAWLPLTV_ 0 0 0 REV__ENSG00000134817|ENST00000606794|APLNR REV__ENSG00000134817|ENST00000606794|APLNR MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2929077148438 2 532.294768 1062.57498 NaN NaN NaN NaN NaN NaN NaN 57.018 1 56.532 56.032 57.032 -0.48554 0 0 0 0.46757 1 30982 30982 16.942 1.0951 1 + 80681 20014 54031 55163 93854 93854 0.04619815108412695 YTCDCDLTAF 10 Unmodified _YTCDCDLTAF_ 0 0 0 ENSG00000108797|ENST00000264638|CNTNAP1 ENSG00000108797|ENST00000264638|CNTNAP1 ENSG00000108797|ENST00000264638|CNTNAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.484619140625 3 384.484309 1150.4311 0.83674 0.00032171 -0.64673 -0.00024866 0.19 7.3054E-05 384.48422720065815 39.801 0.30843 35.271 35.062 35.371 -4.5294 45 19 4 0 0 0 0.71123 1 23704 23704 0.69767 0 1 17537000 80682 2606 54032 55164 93855 93855 -0.1381014277635586 YTCDNHQCI 9 Unmodified _YTCDNHQCI_ 0 0 0 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 ENSG00000081479|ENST00000649046|LRP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7109375 2 548.712959 1095.41136 -0.11737 -6.4404E-05 -2.3682 -0.0012994 -2.4855 -0.0013638 548.7113714705556 41.691 0.21581 41.691 41.589 41.804 0 18 10 2 0 0 0 0.49272 1 22525 22525 7.9102 1.187 1 3859000 80683 1325 54033 55165 93856 93856 -0.13252473996431036 YTCDQPIEL 9 Unmodified _YTCDQPIEL_ 0 0 0 REV__ENSG00000137628|ENST00000393743|DDX60 REV__ENSG00000137628|ENST00000393743|DDX60 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 541.24755859375 2 541.247157 1080.47976 0.51625 0.00027942 -0.91191 -0.00049357 -0.39566 -0.00021415 541.2466639862249 72.992 0.26468 72.992 72.861 73.126 0 18 11 2 0 0 0 0.54444 1 40673 40673 4.756 0 1 495710 + 80684 20254 54034 55166 93857 93857 -0.0572590614492583 YTCFPYTG 8 Unmodified _YTCFPYTG_ 0 0 0 REV__nc|ENSG00000188992|Q6XZB0-8|LIPI REV__nc|ENSG00000188992|Q6XZB0-8|LIPI MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 476.1990661621094 2 476.199479 950.384405 NaN NaN NaN NaN NaN NaN NaN 17.037 1 17.038 16.538 17.538 0.0010548 0 0 0 0.97444 1 8442 8442 0.79363 0 1 + 80685 23750 54035 55167 93858 93858 -0.09277214545318202 YTCHASYTYL 10 Unmodified _YTCHASYTYL_ 0 0 0 ENSG00000115594|ENST00000410023|IL1R1 ENSG00000115594|ENST00000410023|IL1R1 ENSG00000115594|ENST00000410023|IL1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.2691650390625 2 611.265881 1220.51721 -0.027628 -1.6888E-05 2.4375 0.00149 2.4099 0.0014731 611.2671197861332 69.586 0.24842 69.107 68.974 69.223 -0.47903 23 10 3 0 0 0 0.66569 1 38023 38023 6.7232 0 1 1616400 80686 3141 54036 55168 93859 93859 -0.08422814879304497 YTCPFVEKF 9 Unmodified _YTCPFVEKF_ 0 0 0 nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000529203.1_1_11:67269454-67270084:-|nuORF nc|ENSG00000110697|O00562-2|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.2684936523438 2 567.270435 1132.52632 NaN NaN NaN NaN NaN NaN NaN 65.818 1 65.334 64.834 65.834 -0.48428 0 0 0 0.76439 1 35931 35931 7.2892 1.5574 1 80687 2731 54037 55169 93860 93860 -0.034644215229945985 YTCPFVEKF 9 Unmodified _YTCPFVEKF_ 0 0 0 nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1;ENST00000529203.1_1_11:67269454-67270084:-|nuORF nc|ENSG00000110697|O00562-2|PITPNM1 nc|ENSG00000110697|O00562-2|PITPNM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.8118286132812 2 567.270435 1132.52632 0.20852 0.00011829 -4.398 -0.0024949 -4.1895 -0.0023766 567.2675193085718 65.769 0.16611 65.285 65.148 65.314 -0.48428 10 6 2 0 0 0 0.20727 1 35868 35868 7.9102 1.187 1 1691400 80688 2731 54037 55169 93861 93861 -0.034644215229945985 YTCQDDKENS 10 Unmodified _YTCQDDKENS_ 0 0 0 ENSG00000152749|ENST00000376958|GPR180 ENSG00000152749|ENST00000376958|GPR180 ENSG00000152749|ENST00000376958|GPR180 MULTI-MSMS AL20221201_MKP_PDAC_01 4 401.4924926757812 3 401.49252 1201.45573 1.0204 0.00040967 -1.9936 -0.00080041 -0.97323 -0.00039074 401.49172777869234 80.103 0.38995 73.927 73.762 74.152 -6.1757 31 23 2 0 0 0 0.69064 1 52572 52572 1.9064 0.57673 1 17232000 80689 6210 54038 55170 93862 93862 -0.13693791369246355 YTCQRFPFY 9 Unmodified _YTCQRFPFY_ 0 0 0 ENST00000504087.5_1_4:125592929-125593004:-|nuORF ENST00000504087.5_1_4:125592929-125593004:-|nuORF ENST00000504087.5_1_4:125592929-125593004:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 612.7813720703125 2 612.778959 1223.54336 0.29396 0.00018013 0.68087 0.00041722 0.97483 0.00059735 612.7796436211377 70.434 0.28405 69.955 69.778 70.062 -0.47818 42 21 3 0 0 0 0.54444 1 38463 38463 4.756 0 1 7453500 80690 14483 54039 55171 93863 93863 -0.05946500917184494 YTCRTNCPF 9 Unmodified _YTCRTNCPF_ 0 0 0 ENST00000548676.5_1_12:30868062-30869494:-|nuORF ENST00000548676.5_1_12:30868062-30869494:-|nuORF ENST00000548676.5_1_12:30868062-30869494:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2578735351562 2 552.733694 1103.45284 0.96025 0.00053076 -3.6315 -0.0020073 -2.6713 -0.0014765 552.7320296120408 80.885 0.21606 80.393 80.271 80.487 -0.49247 14 9 2 0 0 0 0.21367 1 44262 44262 4.756 0.81161 1 483810 80691 15138 54040 55172 93864 93864 -0.09475293237119331 YTDCDCGFYA 10 Unmodified _YTDCDCGFYA_ 0 0 0 REV__ENST00000594012.1_19:22001940-22034716:-|nuORF REV__ENST00000594012.1_19:22001940-22034716:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.1998291015625 2 579.19935 1156.38415 0.89059 0.00051583 -0.54817 -0.0003175 0.34242 0.00019833 579.1994601087871 54.288 0.30736 54.288 54.132 54.44 0 45 13 5 0 0 0 0.69064 1 30087 30087 3.9444 1.3669 1 13928000 + 80692 29199 54041 55173 93865 93865 -0.18779002327460148 YTDCDCGFYA 10 Unmodified _YTDCDCGFYA_ 0 0 0 REV__ENST00000594012.1_19:22001940-22034716:-|nuORF REV__ENST00000594012.1_19:22001940-22034716:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2005615234375 2 579.19935 1156.38415 0.23192 0.00013433 0.46446 0.00026902 0.69638 0.00040334 579.1998618598161 54.954 0.30116 54.476 54.328 54.629 -0.47798 36 14 3 0 0 0 0.69064 1 29778 29778 3.9444 1.3669 1 4198700 + 80693 29199 54041 55173 93866 93866 -0.18779002327460148 YTDCDCGFYA 10 Unmodified _YTDCDCGFYA_ 0 0 0 REV__ENST00000594012.1_19:22001940-22034716:-|nuORF REV__ENST00000594012.1_19:22001940-22034716:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 579.19935 1156.38415 0.89059 0.00051583 -0.54817 -0.0003175 0.34242 0.00019833 579.1994601087871 54.288 0.30736 54.288 54.132 54.44 0 -0.093925 -0.00068444 NaN 3.9444 45 13 5 NaN NaN NaN NaN 0 NaN NaN 0 13928000 + 80694 29199 54041 55173 -0.18779002327460148 YTDCDCGFYA 10 Unmodified _YTDCDCGFYA_ 0 0 0 REV__ENST00000594012.1_19:22001940-22034716:-|nuORF REV__ENST00000594012.1_19:22001940-22034716:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 579.19935 1156.38415 0.23192 0.00013433 0.46446 0.00026902 0.69638 0.00040334 579.1998618598161 54.954 0.30116 54.476 54.328 54.629 -0.47798 0.093925 0.00048859 NaN 3.9444 36 14 3 NaN NaN NaN NaN 0 NaN NaN 0 4198700 + 80695 29199 54041 55173 -0.18779002327460148 YTDEVWTTI 9 Unmodified _YTDEVWTTI_ 0 0 0 REV__ENSG00000187833|ENST00000409561|C2orf78 REV__ENSG00000187833|ENST00000409561|C2orf78 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.268310546875 2 564.266404 1126.51826 0.96176 0.00054269 1.6087 0.00090775 2.5705 0.0014504 564.2684609997315 68.493 0.56378 62.317 62.028 62.592 -6.1757 105 33 4 0 0 0 0.16226 1 44841 44841 26.884 8.7487 1 169210000 + 80696 23667 54042 55174 93867 93867 -0.03994277238757604 YTDFDTLKY 9 Unmodified _YTDFDTLKY_ 0 0 0 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2;nc|ENSG00000291139|Q6ZN68-2|DPY19L2P2;nc|ENSG00000291139|Q6ZN68|DPY19L2P2 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 nc|ENSG00000291139|Q6ZN68-3|DPY19L2P2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.2747802734375 2 583.274229 1164.53391 NaN NaN NaN NaN NaN NaN NaN 66.899 1 66.899 66.399 67.399 0 0 0 0 0.82396 1 37311 37311 4.756 0 1 80697 16643 54043 55175 93868 93868 -0.0417799072172329 YTDFHVDF 8 Unmodified _YTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2271118164062 2 522.227082 1042.43961 0.79691 0.00041617 0.55725 0.00029101 1.3542 0.00070718 522.2272138123872 60.108 0.33843 60.108 59.962 60.301 0 29 14 3 0 0 0 0.48669 1 33507 33507 36.044 26.697 1 3913000 80698 8288 54044 55176 93869 93869 -0.0799108475318917 YTDFHVDF 8 Unmodified _YTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.2263793945312 2 522.227082 1042.43961 -0.19353 -0.00010107 0.13369 6.9814E-05 -0.059848 -3.1254E-05 522.2263878559996 60.61 0.19966 60.121 60.01 60.21 -0.48932 17 9 3 0 0 0 0.48669 1 33024 33024 36.044 15.173 1 3277300 80699 8288 54044 55176 93870 93870 -0.0799108475318917 YTDFHVDF 8 Unmodified _YTDFHVDF_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;ENST00000526258.5_1_11:66975129-66986794:+|nuORF nc|ENSG00000173120|Q9Y2K7-3|KDM2A nc|ENSG00000173120|Q9Y2K7-3|KDM2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 522.2269287109375 2 522.227082 1042.43961 0.82795 0.00043238 1.2494 0.00065248 2.0774 0.0010849 522.2281576249463 66.29 0.49127 60.114 59.824 60.315 -6.1757 39 27 2 0 0 0 0.40035 1 43128 43128 44.407 23.953 1 13493000 80700 8288 54044 55176 93871 93871 -0.0799108475318917 YTDGDQNHQS 10 Unmodified _YTDGDQNHQS_ 0 0 0 ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L ENSG00000129317|ENST00000344862|PUS7L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 388.8251037597656 3 388.823258 1163.44794 0.1976 7.683E-05 2.8885 0.0011231 3.0861 0.0011999 388.8252811618057 67.882 0.2888 67.882 67.719 68.008 0 40 13 4 0 0 0 0.71413 1 37846 37846 0.56317 0 1 2210900 80701 4130 54045 55177 93872 93872 -0.12724182574515908 YTDIAIGLL 9 Unmodified _YTDIAIGLL_ 0 0 0 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35;nc|ENSG00000101452|Q9H5Z1-2|DHX35 ENSG00000101452|ENST00000252011|DHX35 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5535278320312 1 978.550625 977.543348 0.39046 0.00038208 1.3176 0.0012893 1.7081 0.0016714 978.5520812011247 86.103 0.27918 85.6 85.42 85.699 -0.50318 16 10 2 0 0 0 0.2143 1 47083 47083 21.747 0 1 492940 80702 1969;16092 54046 55178 93873 93873 0.053678223544807224 YTDKQLQQN 9 Unmodified _YTDKQLQQN_ 0 0 0 L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|18|1|sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|18|1|sense L1PA6_dup546|chr2:49227587-49231532:-|2.584081376135472|0.2927699401366612|3.14|179.0|18|1|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.2081909179688 3 379.85601 1136.5462 -0.45558 -0.00017305 3.1576 0.0011994 2.702 0.0010264 379.8565152402839 25.227 0.17539 25.227 25.108 25.283 0 17 8 3 0 0 0 0.209 1 12893 12893 4.5289 1.4566 1 453370 80703 15970 54047 55179 93874 93874 -0.016609542586593307 YTDKTYAMGHL 11 Unmodified _YTDKTYAMGHL_ 0 0 0 ENSG00000102524|ENST00000375887|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 433.8725891113281 3 433.872784 1298.59652 -0.69401 -0.00030111 1.5525 0.00067359 0.85849 0.00037248 433.8728529239327 32.958 0.33718 32.958 32.772 33.109 0 38 16 3 0 0 0 0.67922 1 17244 17244 2.8433 0.21205 1 6794300 80704 2048 54048 55180 93875 93875 -0.040831679251823516 YTDKTYAMGHL 11 Unmodified _YTDKTYAMGHL_ 0 0 0 ENSG00000102524|ENST00000375887|TNFSF13B;nc|ENSG00000102524|Q9Y275-2|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B ENSG00000102524|ENST00000375887|TNFSF13B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 433.872784 1298.59652 -0.2706 -0.00011741 1.2761 0.00055367 1.0055 0.00043626 434.2079008346511 33.072 0.24902 32.913 32.735 32.984 -0.15919 -0.022281 -0.00010002 NaN 2.8433 13 9 2 NaN NaN NaN NaN 0 NaN NaN 0 1010500 80705 2048 54048 55180 -0.040831679251823516 YTDLEVRV 8 Unmodified _YTDLEVRV_ 0 0 0 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 ENSG00000015676|ENST00000355451|NUDCD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7646179199219 2 497.763832 993.513111 0.49655 0.00024716 -0.22067 -0.00010984 0.27588 0.00013732 497.76375173419075 45.811 0.23457 45.811 45.704 45.939 0 20 11 2 0 0 0 0.15594 1 24985 24985 85.272 39.251 1 9441800 80706 499 54049 55181 93876 93876 0.016094636892944436 YTDLFAPREF 10 Unmodified _YTDLFAPREF_ 0 0 0 ENST00000358022.4_1_9:25677009-25677096:-|nuORF ENST00000358022.4_1_9:25677009-25677096:-|nuORF ENST00000358022.4_1_9:25677009-25677096:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 629.8082275390625 2 629.808771 1257.60299 0.14942 9.4108E-05 0.68177 0.00042939 0.83119 0.00052349 629.8093496598254 70.809 0.36603 70.332 70.202 70.568 -0.47736 24 16 2 0 0 0 0.69064 1 38809 38809 3.9444 0 1 1404700 80707 12121 54050 55182 93877 93877 -0.015509067021639567 YTDNWLAVYF 10 Unmodified _YTDNWLAVYF_ 0 0 0 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 ENSG00000134757|ENST00000257189|DSG3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3038940429688 2 646.303321 1290.59209 -0.10124 -6.5429E-05 0.22526 0.00014558 0.12402 8.0156E-05 646.3033841320298 65.776 0.30928 65.292 65.124 65.433 -0.48428 31 12 4 0 0 0 0.52888 1 35874 35874 14.838 7.549 1 7042500 80708 4636 54051 55183 93878 93878 -0.041583090764333974 YTDPGPNQ 8 Unmodified _YTDPGPNQ_ 0 0 0 REV__ENSG00000174405|ENST00000442234|LIG4 REV__ENSG00000174405|ENST00000442234|LIG4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 891.3829956054688 1 891.384288 890.377011 -0.31576 -0.00028146 0.30427 0.00027122 -0.011484 -1.0237E-05 891.3853024461554 41.794 0.23607 41.794 41.645 41.881 0 16 11 2 0 0 0 0.63229 1 22568 22568 23.148 0 1 2009400 + 80709 22791 54052 55184 93879 93879 -0.072562308213719 YTDPVWLF 8 Unmodified _YTDPVWLF_ 0 0 0 REV__ENSG00000094755|ENST00000265294|GABRP REV__ENSG00000094755|ENST00000265294|GABRP MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.779541015625 2 520.758018 1039.50148 0.64062 0.00033361 -1.7859 -0.00093004 -1.1453 -0.00059643 520.7572912580481 46.232 0.28086 41.277 41.104 41.384 -4.9549 24 18 2 0 0 0 8.7369 1 28429 28429 22.453 5.5103 1 12046000 + 80710 17928 54053 55185 93880 93880 -0.016687333340541954 YTDVCALQFVV 11 Unmodified _YTDVCALQFVV_ 0 0 0 REV__ENSG00000165762|ENST00000641885|OR4K2 REV__ENSG00000165762|ENST00000641885|OR4K2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.29736328125 2 629.312832 1256.61111 0.78279 0.00049262 0.71532 0.00045016 1.4981 0.00094277 629.8150314528116 80.075 0.065933 73.899 73.858 73.924 -6.1757 5 3 2 0 0 0 0.56638 1 52491 52491 13.042 1.4022 1 5299300 + 80711 22049 54054 55186 93881 93881 -0.006930957770464374 YTDVPFHNQY 10 Unmodified _YTDVPFHNQY_ 0 0 0 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 ENSG00000105088|ENST00000264833|OLFM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 642.7813110351562 2 642.288202 1282.56185 0.18186 0.00011681 -0.82398 -0.00052923 -0.64212 -0.00041242 642.2901166088886 43.116 0.5097 43.116 42.928 43.438 0 49 25 3 0 0 0 0.62068 1 23553 23553 10.074 0.6908 1 7892100 80712 2275 54055 55187 93882 93882 -0.06812667741610312 YTDYYNYYPND 11 Unmodified _YTDYYNYYPND_ 0 0 0 REV__ENSG00000113083|ENST00000231004|LOX REV__ENSG00000113083|ENST00000231004|LOX MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 497.7589416503906 3 497.52974 1489.56739 0.66984 0.00033327 1.1901 0.00059213 1.86 0.00092539 497.53045898818146 60.212 0.18428 60.212 60.116 60.301 0 15 7 3 0 0 0 0.30584 1 33542 33542 1.3296 0 1 612340 + 80713 18851 54056 55188 93883 93883 -0.15781033740472594 YTEALKPFDF 10 Unmodified _YTEALKPFDF_ 0 0 0 REV__ENSG00000110367|ENST00000534980|DDX6 REV__ENSG00000110367|ENST00000534980|DDX6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.8047485351562 2 615.805697 1229.59684 NaN NaN NaN NaN NaN NaN NaN 54.771 1 54.771 54.271 55.271 0 0 0 0 0.71851 1 30412 30412 15.847 3.6065 1 + 80714 18706 54057 55189 93884 93884 -0.008774249336966022 YTEDCHSCHL 10 Unmodified _YTEDCHSCHL_ 0 0 0 REV__ENST00000457179.5_1_22:22311488-22316996:-|nuORF REV__ENST00000457179.5_1_22:22311488-22316996:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 403.4892272949219 3 403.155074 1206.44339 0.34146 0.00013766 -2.2605 -0.00091134 -1.9191 -0.00077368 403.488690382686 59.891 0.44569 59.891 59.754 60.199 0 34 20 2 0 0 0 0.69126 1 33373 33373 3.8763 1.3778 1 2980100 + 80715 18007 54058 55190 93885 93885 -0.1515710631329057 YTEDELACKK 10 Unmodified _YTEDELACKK_ 0 0 0 REV__nc|ENSG00000163430|Q12841-2|FSTL1 REV__nc|ENSG00000163430|Q12841-2|FSTL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2841186523438 2 600.284271 1198.55399 NaN NaN NaN NaN NaN NaN NaN 93.258 1 93.258 92.758 93.758 0 0 0 0 1.0061 1 51561 51561 0 0 1 + 80716 21764 54059 55191 93886 93886 -0.03734563053444617 YTEERNCEE 9 Unmodified _YTEERNCEE_ 0 0 0 ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A ENSG00000095777|ENST00000642920|MYO3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.729248046875 2 586.72986 1171.44517 0.69744 0.00040921 -0.94736 -0.00055585 -0.24993 -0.00014664 586.7291740211591 34.492 0.33533 30.397 30.214 30.549 -4.0951 45 19 3 0 0 0 0.19127 1 19858 19858 24.021 6.9077 1 24828000 80717 1662 54060 55192 93887 93887 -0.13369774023658465 YTEKLEEIK 9 Unmodified _YTEKLEEIK_ 0 0 0 nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000498527.5_1_7:130050951-130080846:-|nuORF;ENST00000482730.1_1_7:130051992-130056799:-|nuORF nc|ENSG00000106477|Q9BYV8-2|CEP41 nc|ENSG00000106477|Q9BYV8-2|CEP41 MULTI-MSMS AL20221201_MKP_PDAC_01 4 384.8768005371094 3 384.876411 1151.6074 1.0407 0.00040054 -0.010096 -3.8859E-06 1.0306 0.00039665 384.8764242119239 35.32 0.63204 31.225 31.007 31.639 -4.0951 128 38 5 0 0 0 0.21643 1 20511 20511 15.739 1.5205 1 171770000 80718 2430 54061 55193 93888 93888 0.037665577207462775 YTENDPDLEL 10 Unmodified _YTENDPDLEL_ 0 0 0 REV__ENSG00000104969|ENST00000221566|SGTA REV__ENSG00000104969|ENST00000221566|SGTA MULTI-SECPEP AL20221201_MKP_PDAC_01 4 604.7684326171875 2 604.769508 1207.52446 0.13226 7.9985E-05 -2.7512 -0.0016638 -2.6189 -0.0015839 605.2688091926018 65.22 0.37389 59.044 58.847 59.221 -6.1757 42 20 3 0 0 0 0.23227 1 42249 42249 3.5965 1.5367 1 7693900 + 80719 18394 54062 55194 93889 93889 -0.07099803797905224 YTERLLYCVL 10 Unmodified _YTERLLYCVL_ 0 0 0 REV__ENSG00000087008|ENST00000356406|ACOX3 REV__ENSG00000087008|ENST00000356406|ACOX3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 424.8934326171875 3 424.893408 1271.65839 0.89811 0.0003816 0.72914 0.00030981 1.6272 0.00069141 424.8936993631157 18.318 0.22128 15.697 15.572 15.793 -2.6215 36 16 3 0 0 0 0.48505 1 9627 9627 10.899 0.58372 1 3692400 + 80720 17774 54063 55195 93890 93890 0.033431834939619876 YTERMVDRY 9 Unmodified _YTERMVDRY_ 0 0 0 REV__ENSG00000156853|ENST00000287461|ZNF689;REV__nc|ENSG00000169955|Q9BV97-2|ZNF747 REV__ENSG00000156853|ENST00000287461|ZNF689 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 411.52880859375 3 411.529129 1231.56556 NaN NaN NaN NaN NaN NaN NaN 17.928 1 17.942 17.442 18.442 0.013865 0 0 0 0.84564 1 8951 8951 1.0715 0 1 + 80721 21346;29772 54064 55196 93891 93891 -0.040963212393990034 YTESEKIIK 9 Unmodified _YTESEKIIK_ 0 0 0 ENST00000262150.6_1_18:64239265-64271331:-|nuORF ENST00000262150.6_1_18:64239265-64271331:-|nuORF ENST00000262150.6_1_18:64239265-64271331:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 555.7405395507812 2 555.805697 1109.59684 NaN NaN NaN NaN NaN NaN NaN 28.172 1 28.172 27.672 28.672 0 0 0 0 0.82739 1 14541 14541 4.3292 0.73274 1 80722 11260 54065 55197 93892 93892 0.04642575066327481 YTEWESYFE 9 Unmodified _YTEWESYFE_ 0 0 0 REV__ENSG00000065526|ENST00000375759|SPEN REV__ENSG00000065526|ENST00000375759|SPEN MULTI-MSMS AL20221201_MKP_PDAC_01 4 418.5061340332031 3 418.504755 1252.49243 1.1689 0.00048917 1.1289 0.00047244 2.2977 0.00096161 418.5053702372883 34.787 1.0656 30.692 30.301 31.367 -4.0951 103 63 3 0 0 0 0.58865 1 20165 20165 1.0715 0 1 11612000 + 80723 17379 54066 55198 93893 93893 -0.12371171481049714 YTEWEVKRW 9 Unmodified _YTEWEVKRW_ 0 0 0 ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF ENST00000431677.1_1_X:100673784-100702742:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8851928710938 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 51.606 1 51.548 51.048 52.048 -0.058918 0 0 0 0.85359 1 27942 27942 1.0715 0.29493 1 80724 13264 54067 55199 93894 93894 -0.006117980909493781 YTEWWREKRML 11 Unmodified _YTEWWREKRML_ 0 0 0 ENST00000292599.3_1_5:179203171-179203312:+|nuORF ENST00000292599.3_1_5:179203171-179203312:+|nuORF ENST00000292599.3_1_5:179203171-179203312:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.603759765625 3 533.269649 1596.78712 0.042692 2.2766E-05 0.54769 0.00029207 0.59038 0.00031483 533.2705628499475 69.198 0.27389 68.718 68.554 68.828 -0.48071 22 11 2 0 0 0 0.74046 1 37858 37858 0.45452 0 1 1180600 80725 11476 54068 55200 93895 93895 0.012595384568840018 YTEYDKRSPEQ 11 Unmodified _YTEYDKRSPEQ_ 0 0 0 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 REV__nc|ENSG00000169862|Q9UQB3-2|CTNND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 708.3236083984375 2 708.325513 1414.63647 0.81584 0.00057788 -0.034047 -2.4117E-05 0.7818 0.00055377 708.3245169316949 80.226 0.29684 79.736 79.587 79.884 -0.48933 16 11 2 0 0 0 0.71341 1 43940 43940 2.9952 1.3426 1 676960 + 80726 22430 54069 55201 93896 93896 -0.05425949720893186 YTEYEVLTY 9 Unmodified _YTEYEVLTY_ 0 0 0 REV__ENST00000555532.2_1_14:60864810-60864996:+|nuORF REV__ENST00000555532.2_1_14:60864810-60864996:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7742309570312 2 590.774062 1179.53357 NaN NaN NaN NaN NaN NaN NaN 58.929 1 58.929 58.429 59.429 0 0 0 0 0.33856 1 32820 32820 23.148 5.0134 1 + 80727 24602 54070 55202 93897 93897 -0.04901410441561893 YTFARAFLMQ 10 Unmodified _YTFARAFLMQ_ 0 0 0 nc|ENSG00000196365|P36776-2|LONP1;ENSG00000196365|ENST00000360614|LONP1;ENST00000590558.5_1_19:5692045-5712033:-|nuORF;nc|ENSG00000196365|P36776-3|LONP1;LONP1|p.A817S|1|0.23|ENSG00000196365|chr19:5693641-5693641|C/A|missense_variant;ENST00000587552.5_1_19:5692045-5696439:-|nuORF nc|ENSG00000196365|P36776-2|LONP1 nc|ENSG00000196365|P36776-2|LONP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.3146362304688 2 624.315709 1246.61686 0.77739 0.00048533 -1.9431 -0.0012131 -1.1657 -0.00072777 624.3141439877093 83.107 0.30943 83.17 82.995 83.305 0.063171 29 11 3 0 0 0 0.095098 1 45952 45952 47.749 7.799 1 9057500 80728 9804 54071 55203 93898 93898 0.003420475253051336 YTFCVSYVDS 10 Unmodified _YTFCVSYVDS_ 0 0 0 ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1 ENSG00000097007|ENST00000318560|ABL1 ENSG00000097007|ENST00000318560|ABL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.9380493164062 2 592.25244 1182.49033 0.53693 0.000318 -0.2245 -0.00013296 0.31243 0.00018503 592.2521036382274 84.572 0.22559 84.072 83.932 84.157 -0.49961 13 10 2 0 0 0 0.70895 1 46250 46250 0.40072 0.40072 1 535520 80729 1679 54072 55204 93899 93899 -0.09361923490496338 YTFDFKGII 9 Unmodified _YTFDFKGII_ 0 0 0 ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 ENSG00000113300|ENST00000261951|CNOT6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.2925415039062 2 552.292225 1102.5699 0.76475 0.00042236 0.75138 0.00041498 1.5161 0.00083735 552.2926407189291 73.898 0.25517 73.898 73.738 73.994 0 21 10 3 0 0 0 0.53557 1 41134 41134 8.5933 0.68312 1 671080 80730 2956 54073 55205 93900 93900 0.02271511245817237 YTFERNCYP 9 Unmodified _YTFERNCYP_ 0 0 0 REV__nc|ENSG00000116731|Q13029-2|PRDM2 REV__nc|ENSG00000116731|Q13029-2|PRDM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 597.261962890625 2 596.758223 1191.50189 0.69035 0.00041197 0.87365 0.00052135 1.564 0.00093332 597.2596805509888 72.582 0.29214 72.105 71.938 72.23 -0.4761 30 13 3 0 0 0 0.55144 1 39707 39707 4.3292 0 1 1771200 + 80731 19063 54074 55206 93901 93901 -0.08619681676486834 YTFFYHPPHV 10 Unmodified _YTFFYHPPHV_ 0 0 0 REV__nc|ENSG00000110429|Q9UK99-3|FBXO3 REV__nc|ENSG00000110429|Q9UK99-3|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.3160400390625 2 654.314023 1306.61349 0.39886 0.00026098 0.36521 0.00023896 0.76407 0.00049994 654.3141692650514 93.191 0.19928 92.733 92.637 92.836 -0.4574 15 8 3 0 0 0 0.72196 1 50938 50938 0.45834 0 1 401220 + 80732 18709 54075 55207 93902 93902 -0.02754879257054199 YTFHSQSLYY 10 Unmodified _YTFHSQSLYY_ 0 0 0 ENSG00000189050|ENST00000305783|RNFT1;ENST00000586083.5_1_17:58037427-58042045:-|nuORF ENSG00000189050|ENST00000305783|RNFT1 ENSG00000189050|ENST00000305783|RNFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 654.7991333007812 2 654.798403 1307.58225 0.56343 0.00036894 1.3913 0.000911 1.9547 0.0012799 654.7988865431072 52.351 0.15459 51.918 51.809 51.964 -0.43367 10 7 2 0 0 0 0.69377 1 28293 28293 3.5965 0 1 1419000 80733 9725 54076 55208 93903 93903 -0.05923497081789719 YTFIGDILL 9 Unmodified _YTFIGDILL_ 0 0 0 nc|ENSG00000041515|Q9Y6X6-4|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF;MYO16|p.F842Sfs*17|1|0.33|ENSG00000041515|chr13:109009038-109009038|T/-|frameshift_variant;nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16 nc|ENSG00000041515|Q9Y6X6-4|MYO16 nc|ENSG00000041515|Q9Y6X6-4|MYO16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 527.7949829101562 2 527.794601 1053.57465 0.28181 0.00014874 0.83047 0.00043832 1.1123 0.00058705 527.7948970079532 97.153 0.3965 96.91 96.685 97.081 -0.24277 43 17 3 0 0 0 0.39863 2 52995 52995;53100 12.532 0 1 2138300 80734 655 54077 55209 93904;93905 93904 0.05000395388583456 YTFQNGEDGDG 11 Unmodified _YTFQNGEDGDG_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.7322998046875 2 601.733457 1201.45236 -0.14654 -8.8176E-05 -1.5545 -0.00093541 -1.7011 -0.0010236 601.7326113547668 72.12 0.4392 72.12 71.923 72.362 0 99 19 7 0 0 0 0.71341 1 40214 40214 2.9952 0.69251 1 14335000 80735 385 54078 55210 93906 93906 -0.14030718151616384 YTFQNGEDGDG 11 Unmodified _YTFQNGEDGDG_ 0 0 0 nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 nc|ENSG00000008300|Q9NYQ7-2|CELSR3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 601.73291015625 2 601.733457 1201.45236 0.29538 0.00017774 -1.2366 -0.00074413 -0.94126 -0.00056639 601.7325835583189 80.13 0.57745 73.954 73.642 74.22 -6.1757 119 34 5 0 0 0 0.71341 1 52520 52520 2.9952 2.9952 1 117310000 80736 385 54078 55210 93907 93907 -0.14030718151616384 YTFRAGPDMM 10 Unmodified _YTFRAGPDMM_ 0 0 0 ENST00000492136.1_1_3:33438291-33438444:-|nuORF ENST00000492136.1_1_3:33438291-33438444:-|nuORF ENST00000492136.1_1_3:33438291-33438444:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 396.8777160644531 3 396.84406 1187.51035 NaN NaN NaN NaN NaN NaN NaN 6.4933 1 4.0114 3.5114 4.5114 -2.482 0 0 0 1.0004 1 3283 3283 0.62683 0.39098 1 80737 14290 54079 55211 93908 93908 -0.07590451031524026 YTFTVNEFDV 10 Unmodified _YTFTVNEFDV_ 0 0 0 REV__nc|ENSG00000150967|Q9NP78-6|ABCB9 REV__nc|ENSG00000150967|Q9NP78-6|ABCB9 MSMS AL20221201_MKP_PDAC_01 4 412.1942749023438 3 412.1924 1233.55537 NaN NaN NaN NaN NaN NaN NaN 19.617 1 16.961 16.461 17.461 -2.6564 0 0 0 0.95639 1 10406 10406 5.4027 1.2132 1 + 80738 21043 54080 55212 93909 93909 -0.0520660569300162 YTFTVSEDVPI 11 Unmodified _YTFTVSEDVPI_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 424.2120361328125 3 424.211571 1269.61288 0.46872 0.00019884 1.5374 0.0006522 2.0062 0.00085103 424.21209556140906 50.861 0.21311 50.808 50.708 50.921 -0.053871 19 10 3 0 0 0 0.68427 1 27516 27516 2.6312 0.72486 1 1745900 80739 1378 54081 55213 93910 93910 -0.011137634874330615 YTFYDDYF 8 Unmodified _YTFYDDYF_ 0 0 0 ENST00000453386.6_1_3:185635356-185635488:-|nuORF ENST00000453386.6_1_3:185635356-185635488:-|nuORF ENST00000453386.6_1_3:185635356-185635488:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2254028320312 2 567.226748 1132.43894 NaN NaN NaN NaN NaN NaN NaN 37.142 1 37.142 36.642 37.642 0 0 0 0 0.97348 1 19737 19737 5.7604 1.0044 1 80740 13554 54082 55214 93911 93911 -0.12197924192923892 YTFYHENPY 9 Unmodified _YTFYHENPY_ 0 0 0 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 ENSG00000152217|ENST00000649279|SETBP1 MSMS AL20221201_MKP_PDAC_01 4 411.84619140625 3 411.845223 1232.51384 NaN NaN NaN NaN NaN NaN NaN 19.915 1 17.258 16.758 17.758 -2.6564 0 0 0 0.7453 1 10581 10581 4.897 2.1618 1 80741 6169 54083 55215 93912 93912 -0.09311741661667838 YTFYHQLASI 10 Unmodified _YTFYHQLASI_ 0 0 0 ENST00000370546.5_2_10:100219485-100249948:-|nuORF ENST00000370546.5_2_10:100219485-100249948:-|nuORF ENST00000370546.5_2_10:100219485-100249948:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8116455078125 2 621.811313 1241.60807 0.041586 2.5858E-05 1.0733 0.00066737 1.1149 0.00069323 621.8119599331388 69.264 0.77811 68.783 68.443 69.221 -0.48071 74 33 3 0 0 0 0.70895 1 38031 38031 3.9444 3.9444 1 7424700 80742 12335 54084 55216 93913 93913 -0.0030660283950965095 YTFYNFVP 8 Unmodified _YTFYNFVP_ 0 0 0 REV__ENSG00000187240|ENST00000375735|DYNC2H1 REV__ENSG00000187240|ENST00000375735|DYNC2H1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.7091064453125 2 525.750193 1049.48583 0.81021 0.00042597 -4.0983 -0.0021547 -3.2881 -0.0017287 525.748244034949 60.067 0.23476 60.067 59.923 60.158 0 17 10 3 0 0 0 8.7369 1 33425 33425 5.7604 0.52976 1 1002500 + 80743 23629 54085 55217 93914 93914 -0.036930198510845 YTGAFFRFN 9 Unmodified _YTGAFFRFN_ 0 0 0 REV__nc|ENSG00000204084|P32019-3|INPP5B REV__nc|ENSG00000204084|P32019-3|INPP5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 374.8506774902344 3 374.85042 1121.52943 NaN NaN NaN NaN NaN NaN NaN 28.437 1 28.375 27.875 28.875 -0.062159 0 0 0 0.85798 1 14681 14681 0.23584 0 1 + 80744 24138 54086 55218 93915 93915 -0.02647410353961277 YTGDDHFGSRC 11 Unmodified _YTGDDHFGSRC_ 0 0 0 REV__ENSG00000165973|ENST00000357134|NELL1 REV__ENSG00000165973|ENST00000357134|NELL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 419.8369750976562 3 419.836621 1256.48803 0.73716 0.00030949 0.84089 0.00035304 1.5781 0.00066252 419.8368645785012 46.528 0.58273 41.448 41.189 41.772 -5.0805 290 91 4 0 0 0 0.71036 1 28607 28607 1.3296 0.11481 1 350000000 + 80745 22071 54087 55219 93916 93916 -0.12994959175580334 YTGEISTTRV 10 Unmodified _YTGEISTTRV_ 0 0 0 ENSG00000204962|ENST00000531613|PCDHA8;nc|ENSG00000204962|Q9Y5H6-2|PCDHA8 ENSG00000204962|ENST00000531613|PCDHA8 ENSG00000204962|ENST00000531613|PCDHA8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1965942382812 3 376.196144 1125.5666 NaN NaN NaN NaN NaN NaN NaN 56.229 1 56.229 55.729 56.729 0 0 0 0 0.96981 1 31267 31267 1.9064 0 1 80746 10340 54088 55220 93917 93917 0.00884216401118465 YTGEMAWIY 9 Unmodified _YTGEMAWIY_ 0 0 0 nc|ENSG00000131089|O43307|ARHGEF9;ENSG00000131089|ENST00000671741|ARHGEF9;nc|ENSG00000131089|O43307-3|ARHGEF9;nc|ENSG00000131089|O43307-2|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 nc|ENSG00000131089|O43307|ARHGEF9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 567.2809448242188 2 567.252243 1132.48993 0.32677 0.00018536 1.5892 0.00090146 1.9159 0.0010868 567.253611482116 63.242 0.10114 63.242 63.17 63.272 0 5 3 2 0 0 0 0.13712 1 35282 35282 16.942 0 1 497290 80747 4297 54089 55221 93918 93918 -0.07101298419684099 YTGIDHHW 8 Unmodified _YTGIDHHW_ 0 0 0 ENSG00000164934|ENST00000612750|DCAF13;ENST00000495256.1_1_7:105766226-105766550:+|nuORF ENSG00000164934|ENST00000612750|DCAF13 ENSG00000164934|ENST00000612750|DCAF13 MSMS AL20221201_MKP_PDAC_01 4 514.7324829101562 2 514.732866 1027.45118 NaN NaN NaN NaN NaN NaN NaN 38.521 1 34.152 33.652 34.652 -4.3689 0 0 0 0.054289 1 22738 22738 101.72 44.251 1 80748 7266 54090 55222 93919 93919 -0.06144842939215778 YTGKRWQWNYT 11 Unmodified _YTGKRWQWNYT_ 0 0 0 REV__ENST00000424203.5_1_21:34911493-34911649:-|nuORF REV__ENST00000424203.5_1_21:34911493-34911649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.5774230957031 3 501.577359 1501.71025 -0.86182 -0.00043227 0.72152 0.0003619 -0.14029 -7.0368E-05 501.5777365118661 16.366 0.096989 16.367 16.308 16.405 0.0010548 66 28 3 0 0 0 0.74046 2 8047 8047;8052 0.45452 0 1 1001700 + 80749 26875 54091 55223 93920;93921 93920 -0.02053936767902087 YTGLKTAQKF 10 Unmodified _YTGLKTAQKF_ 0 0 0 ENSG00000169519|ENST00000407364|METTL15;ENST00000481421.1_1_3:156431675-156432128:-|nuORF ENSG00000169519|ENST00000407364|METTL15 ENSG00000169519|ENST00000407364|METTL15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 578.8218383789062 2 578.821681 1155.62881 1.6769 0.00097062 -0.78424 -0.00045394 0.89265 0.00051668 578.8211714147254 50.277 0.18288 50.229 50.148 50.331 -0.048828 15 8 2 0 0 0 0.70895 1 27207 27207 3.9444 2.1002 1 2184300 80750 7881 54092 55224 93922 93922 0.05721987540118789 YTGMLNAVNLF 11 Unmodified _YTGMLNAVNLF_ 0 0 0 nc|ENSG00000138075|Q9H222-2|ABCG5;ENSG00000138075|ENST00000405322|ABCG5 nc|ENSG00000138075|Q9H222-2|ABCG5 nc|ENSG00000138075|Q9H222-2|ABCG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.8134765625 2 621.812999 1241.61144 0.45513 0.000283 -2.4316 -0.001512 -1.9765 -0.001229 621.8115037861804 71.181 0.33389 70.704 70.505 70.839 -0.47735 39 14 4 0 0 0 0.39949 1 38928 38928 21.537 2.28 1 3919300 80751 5012 54093 55225 93923 93923 0.00030323942814902693 YTGSQLSPVLL 11 Unmodified _YTGSQLSPVLL_ 0 0 0 ENST00000432854.5_1_7:44100999-44101362:+|nuORF ENST00000432854.5_1_7:44100999-44101362:+|nuORF ENST00000432854.5_1_7:44100999-44101362:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 393.556884765625 3 393.22029 1176.63904 0.64342 0.000253 0.13138 5.166E-05 0.77479 0.00030466 393.5551775829732 47.656 0.36753 47.303 47.085 47.452 -0.35261 31 17 3 0 0 0 0.54936 1 25563 25563 10.899 3.8619 1 7320400 80752 13282 54094 55226 93924 93924 0.0577855047470166 YTGVPGLPSTF 11 Unmodified _YTGVPGLPSTF_ 0 0 0 nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L nc|ENSG00000143569|Q14157-3|UBAP2L MULTI-MSMS AL20221201_MKP_PDAC_01 4 380.8690185546875 3 380.197485 1137.57063 0.76839 0.00029214 3.9538 0.0015032 4.7222 0.0017954 380.1964248877127 22.745 0.69185 19.966 19.613 20.305 -2.7784 177 45 6 0 0 0 0.65108 1 12087 12087 4.4062 0 1 317640000 80753 5528 54095 55227 93925 93925 0.00734305894843601 YTGYRPFLD 9 Unmodified _YTGYRPFLD_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1 nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2774658203125 2 566.277106 1130.53966 0.68309 0.00038682 -0.12822 -7.2609E-05 0.55487 0.00031421 566.2761684995061 48.075 0.17657 48.037 47.946 48.122 -0.038643 13 8 2 0 0 0 0.41742 1 25930 25930 11.64 0.81637 1 1612300 80754 5216 54096 55228 93926 93926 -0.020388474193850925 YTGYSPYGSEL 11 Unmodified _YTGYSPYGSEL_ 0 0 0 ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A ENSG00000163874|ENST00000373087|ZC3H12A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.8535766601562 3 412.852154 1235.53463 NaN NaN NaN NaN NaN NaN NaN 53.047 1 53.047 52.547 53.547 0 0 0 0 0.93933 1 29382 29382 1.2148 0 1 80755 7089 54097 55229 93927 93927 -0.07371196072654129 YTHENRKFF 9 Unmodified _YTHENRKFF_ 0 0 0 REV__ENSG00000090861|ENST00000261772|AARS1 REV__ENSG00000090861|ENST00000261772|AARS1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.80322265625 2 621.306729 1240.59891 0.62331 0.00038727 2.6917 0.0016724 3.3151 0.0020597 621.8108330815536 72.638 0.27235 72.162 72 72.272 -0.47603 32 12 4 0 0 0 0.21367 1 39765 39765 4.756 0 1 1369300 + 80756 17871 54098 55230 93928 93928 -0.01176951405204818 YTHINRPNEP 10 Unmodified _YTHINRPNEP_ 0 0 0 REV__nc|ENSG00000146147|Q5VWP3-4|MLIP REV__nc|ENSG00000146147|Q5VWP3-4|MLIP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.8075561523438 2 620.807094 1239.59963 NaN NaN NaN NaN NaN NaN NaN 24.935 1 24.935 24.435 25.435 0 0 0 0 0.97302 1 12760 12760 3.5965 1.098 1 + 80757 20814 54099 55231 93929 93929 -0.010581567561530392 YTHPSHRSLY 10 Unmodified _YTHPSHRSLY_ 0 0 0 REV__ENST00000420124.2_1_19:36223230-36223359:+|nuORF REV__ENST00000420124.2_1_19:36223230-36223359:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.308837890625 2 630.809636 1259.60472 -0.16543 -0.00010435 -1.151 -0.00072608 -1.3165 -0.00083044 630.809195443588 56.325 0.28998 56.325 56.184 56.474 0 20 13 2 0 0 0 0.63399 1 31312 31312 9.3831 2.66 1 3779600 + 80758 26830 54100 55232 93930 93930 -0.01469852893501411 YTHQISNVLCL 11 Unmodified _YTHQISNVLCL_ 0 0 0 REV__ENST00000369983.3_1_10:104122232-104122292:+|nuORF REV__ENST00000369983.3_1_10:104122232-104122292:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 430.8877563476562 3 430.888546 1289.64381 NaN NaN NaN NaN NaN NaN NaN 28.07 1 24.922 24.422 25.422 -3.1482 0 0 0 0.88164 1 15619 15619 4.1166 0 1 + 80759 26048 54101 55233 93931 93931 0.010571113458354375 YTHRFNTED 9 Unmodified _YTHRFNTED_ 0 0 0 ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI ENSG00000173611|ENST00000336505|SCAI ENSG00000173611|ENST00000336505|SCAI MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7636108398438 2 591.762352 1181.51015 0.59203 0.00035034 2.3671 0.0014008 2.9592 0.0017511 591.7637475145733 82.687 0.2802 82.189 82.077 82.357 -0.49751 17 11 2 0 0 0 0.43463 1 45307 45307 10.824 0 1 750700 80760 8347 54102 55234 93932 93932 -0.0733441143552227 YTHTHTHIY 9 Unmodified _YTHTHTHIY_ 0 0 0 REV__ENST00000337227.8_1_20:18469438-18469636:-|nuORF REV__ENST00000337227.8_1_20:18469438-18469636:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 586.330078125 2 586.777805 1171.54106 1.1459 0.0006724 -2.053 -0.0012047 -0.9071 -0.00053226 586.7766149774226 97.872 0.16698 91.696 91.614 91.781 -6.1757 25 10 3 0 0 0 0.19298 1 64819 64819 8.5933 0 1 40610000 + 80761 25657 54103 55235 93933 93933 -0.037852133306159885 YTHWQAWC 8 Unmodified _YTHWQAWC_ 0 0 0 ENST00000490035.6_1_3:116164040-116164325:-|nuORF ENST00000490035.6_1_3:116164040-116164325:-|nuORF ENST00000490035.6_1_3:116164040-116164325:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 365.488037109375 3 365.488605 1093.44399 0.24703 9.0288E-05 -0.78749 -0.00028782 -0.54046 -0.00019753 365.4882510889813 55.082 0.24194 54.604 54.491 54.733 -0.47798 19 11 2 0 0 0 0.80676 1 29855 29855 1.6526 0 1 2608800 80762 14252 54104 55236 93934 93934 -0.09899898811272578 YTIGGIVF 8 Unmodified _YTIGGIVF_ 0 0 0 REV__ENSG00000116266|ENST00000370008|STXBP3 REV__ENSG00000116266|ENST00000370008|STXBP3 MSMS AL20221201_MKP_PDAC_01 4 435.2432250976562 2 435.242004 868.469455 NaN NaN NaN NaN NaN NaN NaN 77.933 1 71.757 71.257 72.257 -6.1757 0 0 0 0.9706 1 50993 50993 6.3541 0 1 + 80763 19035 54105 55237 93935 93935 0.029958989828060112 YTIIYTDKL 9 Unmodified _YTIIYTDKL_ 0 0 0 ENSG00000214360|ENST00000398186|EFCAB9 ENSG00000214360|ENST00000398186|EFCAB9 ENSG00000214360|ENST00000398186|EFCAB9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.2596435546875 2 565.310615 1128.60668 0.47325 0.00026753 -0.13245 -7.4874E-05 0.3408 0.00019266 565.3104180841791 67.507 0.29649 67.507 67.342 67.639 0 37 13 4 0 0 0 0.48152 1 37584 37584 8.5933 0 1 7439500 80764 10490 54106 55238 93936 93936 0.04751763071703863 YTIKVHQHSC 10 Unmodified _YTIKVHQHSC_ 0 0 0 REV__GGCX|p.R406C|1|0.15|ENSG00000115486|chr2:85553010-85553010|G/A|missense_variant REV__GGCX|p.R406C|1|0.15|ENSG00000115486|chr2:85553010-85553010|G/A|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 405.8688659667969 3 405.869485 1214.58663 -0.3386 -0.00013743 0.75364 0.00030588 0.41505 0.00016845 405.8697793371328 30.64 0.33644 30.67 30.519 30.856 0.030106 21 14 2 0 0 0 0.6966 1 16016 16016 1.5923 0.52082 1 1659800 + 80765 29351 54107 55239 93937 93937 -0.012083111398851543 YTILIKYGG 9 Unmodified _YTILIKYGG_ 0 0 0 nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF nc|ENSG00000196924|P21333-2|FLNA nc|ENSG00000196924|P21333-2|FLNA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 514.294921875 2 514.294768 1026.57498 0.82731 0.00042548 -0.96752 -0.00049759 -0.14021 -7.2107E-05 514.2940551725026 58.466 0.23141 58.405 58.294 58.526 -0.060719 20 11 2 0 0 0 0.34999 1 31856 31856 14.838 1.3304 1 3569500 80766 9884 54108 55240 93938 93938 0.0627581510843811 YTIQIYAKN 9 Unmodified _YTIQIYAKN_ 0 0 0 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 REV__nc|ENSG00000116641|Q96N67-3|DOCK7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.3016967773438 2 557.300581 1112.58661 3.7498 0.0020898 -2.1171 -0.0011799 1.6327 0.0009099 557.2994514553093 98.018 0.30595 98 97.9 98.206 -0.018188 14 10 2 0 0 0 0.36964 1 54481 54481 13.906 1.3745 1 1626100 + 80767 19051 54109 55241 93939 93939 0.03482012131757983 YTIVLNSPL 9 Unmodified _YTIVLNSPL_ 0 0 0 nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF nc|ENSG00000178075|Q8IYS0-2|GRAMD1C nc|ENSG00000178075|Q8IYS0-2|GRAMD1C MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.771240234375 2 510.292225 1018.5699 0.60388 0.00030815 -0.5086 -0.00025953 0.095281 4.8621E-05 510.2919104970217 53.546 0.22604 53.546 53.401 53.627 0 14 10 2 0 0 0 0.19613 1 29635 29635 7.9102 0 1 1495600 80768 8728 54110 55242 93940 93940 0.06135511245793168 YTIVLNSPL 9 Unmodified _YTIVLNSPL_ 0 0 0 nc|ENSG00000178075|Q8IYS0-2|GRAMD1C;ENSG00000178075|ENST00000358160|GRAMD1C;ENST00000479212.5_1_3:113627916-113664322:+|nuORF nc|ENSG00000178075|Q8IYS0-2|GRAMD1C nc|ENSG00000178075|Q8IYS0-2|GRAMD1C MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 510.292225 1018.5699 0.10349 5.2812E-05 -0.36778 -0.00018767 -0.26428 -0.00013486 510.2923286778383 54.017 0.26073 53.55 53.407 53.667 -0.46664 0.0017918 8.16E-05 NaN 7.9102 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 2547100 80769 8728 54110 55242 0.06135511245793168 YTIYHKRW 8 Unmodified _YTIYHKRW_ 0 0 0 REV__ENSG00000262406|ENST00000571244|MMP12 REV__ENSG00000262406|ENST00000571244|MMP12 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 584.2872314453125 2 583.808908 1165.60326 0.10158 5.9301E-05 0.84362 0.00049251 0.94519 0.00055181 583.8079129259605 65.572 0.10663 59.396 59.324 59.43 -6.1757 6 5 2 0 0 0 8.7369 1 42595 42595 5.7604 1.0044 1 4341700 + 80770 24592 54111 55243 93941 93941 0.02708557808364276 YTIYTPLL 8 Unmodified _YTIYTPLL_ 0 0 0 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 nc|ENSG00000176290|Q96R72|OR4K3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 492.2752685546875 2 492.276044 982.537535 0.21873 0.00010767 -1.121 -0.00055184 -0.90228 -0.00044417 492.2752666276041 30.126 0.25597 30.156 30.021 30.277 0.030106 25 10 3 0 0 0 0.61462 1 15731 15731 24.674 0 1 4211000 80771 16398 54112 55244 93942 93942 0.04556723842813426 YTKDYDSQY 9 Unmodified _YTKDYDSQY_ 0 0 0 REV__ENSG00000175664|ENST00000380473|TEX26 REV__ENSG00000175664|ENST00000380473|TEX26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.1718444824219 3 394.836504 1181.48768 -0.6071 -0.00023971 1.5198 0.00060007 0.9127 0.00036037 394.8372053518289 17.469 0.21848 17.469 17.316 17.534 0 49 37 2 0 0 0 0.61256 1 8529 8529 0.26902 0 1 727390 + 80772 22886 54113 55245 93943 93943 -0.09580055623814587 YTKEYSSHIF 10 Unmodified _YTKEYSSHIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 637.805419921875 2 637.806228 1273.5979 0.40854 0.00026057 -1.784 -0.0011378 -1.3755 -0.00087728 637.8053131780074 73.289 0.17464 72.813 72.739 72.913 -0.47588 12 7 2 0 0 0 0.62068 1 40118 40118 10.074 3.3508 1 637150 80773 4538 54114 55246 93944 93944 -0.027952105647727876 YTKEYSSHIF 10 Unmodified _YTKEYSSHIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8043823242188 2 637.806228 1273.5979 0.31442 0.00020054 -0.27243 -0.00017376 0.041982 2.6776E-05 637.8060981429376 60.236 0.26478 60.183 59.994 60.259 -0.053059 28 14 3 0 0 0 0.2178 1 32795 32795 32.305 9.1571 1 6319400 80774 4538 54114 55246 93945 93945 -0.027952105647727876 YTKEYSSHIF 10 Unmodified _YTKEYSSHIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 637.8054809570312 2 637.806228 1273.5979 0.091871 5.8596E-05 -0.3624 -0.00023114 -0.27053 -0.00017254 637.805876352101 72.714 0.54276 72.756 72.378 72.921 0.041725 40 25 3 0 0 0 0.27276 1 40046 40046 29.082 10.935 1 2965500 80775 4538 54114 55246 93946 93946 -0.027952105647727876 YTKEYSSHIF 10 Unmodified _YTKEYSSHIF_ 0 0 0 ENSG00000133863|ENST00000643185|TEX15;nc|ENSG00000133863|Q9BXT5|TEX15 ENSG00000133863|ENST00000643185|TEX15 ENSG00000133863|ENST00000643185|TEX15 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 637.806228 1273.5979 0.091871 5.8596E-05 -0.3624 -0.00023114 -0.27053 -0.00017254 637.805876352101 72.714 0.54276 72.756 72.378 72.921 0.041725 -0.028664 0.00030971 NaN 29.082 40 25 3 NaN NaN NaN NaN 0 NaN NaN 0 2965500 80776 4538 54114 55246 -0.027952105647727876 YTKFEENSL 9 Unmodified _YTKFEENSL_ 0 0 0 REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7734985351562 2 565.771854 1129.52915 0.43691 0.00024719 -0.53703 -0.00030384 -0.10013 -5.6648E-05 565.7713866021525 43.202 0.2953 43.202 43.046 43.341 0 45 14 4 0 0 0 0.024882 1 23403 23403 58.679 2.5018 1 41739000 + 80777 18228 54115 55247 93947 93947 -0.030428748644681036 YTKFEENSL 9 Unmodified _YTKFEENSL_ 0 0 0 REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 565.769287109375 2 565.771854 1129.52915 1.0461 0.00059184 0.19705 0.00011148 1.2431 0.00070333 565.7727850152858 48.632 0.33994 43.236 43.084 43.424 -5.3961 42 19 3 0 0 0 0.022193 1 30288 30288 61.357 2.6787 1 36679000 + 80778 18228 54115 55247 93948 93948 -0.030428748644681036 YTKFEENSL 9 Unmodified _YTKFEENSL_ 0 0 0 REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 565.771854 1129.52915 0.43691 0.00024719 -0.53703 -0.00030384 -0.10013 -5.6648E-05 565.7713866021525 43.202 0.2953 43.202 43.046 43.341 0 -0.017056 -0.0001836 NaN 61.357 45 14 4 NaN NaN NaN NaN 0 NaN NaN 0 41739000 + 80779 18228 54115 55247 -0.030428748644681036 YTKFEENSL 9 Unmodified _YTKFEENSL_ 0 0 0 REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF REV__ENST00000428400.5_1_X:47085983-47086499:+|nuORF MULTI-MATCH-MSMS AL20221201_MKP_PDAC_01 4 2 565.771854 1129.52915 1.0461 0.00059184 0.19705 0.00011148 1.2431 0.00070333 565.7727850152858 48.632 0.33994 43.236 43.084 43.424 -5.3961 0.017056 0.00064704 NaN 61.357 42 19 3 NaN NaN NaN NaN 0 NaN NaN 0 36679000 + 80780 18228 54115 55247 -0.030428748644681036 YTKGTLHPNF 10 Unmodified _YTKGTLHPNF_ 0 0 0 REV__ENSG00000112902|ENST00000382496|SEMA5A REV__ENSG00000112902|ENST00000382496|SEMA5A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.3072509765625 2 589.303655 1176.59276 NaN NaN NaN NaN NaN NaN NaN 66.641 1 66.641 66.141 67.141 0 0 0 0 0.96981 1 37167 37167 3.9444 0.66309 1 + 80781 18843 54116 55248 93949 93949 0.01152530363265214 YTKHFRSY 8 Unmodified _YTKHFRSY_ 0 0 0 REV__ENSG00000123700|ENST00000243457|KCNJ2 REV__ENSG00000123700|ENST00000243457|KCNJ2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.2762451171875 2 551.277441 1100.54033 0.39913 0.00022003 -0.87563 -0.00048272 -0.4765 -0.00026269 551.2766729374565 87.479 0.52606 87.479 87.17 87.696 0 68 24 4 0 0 0 0.80722 1 48317 48317 2.3027 0.24298 1 4047400 + 80782 19401 54117 55249 93950 93950 -0.0059200797966241225 YTKIFNDFK 9 Unmodified _YTKIFNDFK_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 392.5418090820312 3 392.541363 1174.60226 0.63537 0.00024941 0.064899 2.5475E-05 0.70027 0.00027489 392.54139643573006 46.787 0.33367 46.45 46.27 46.604 -0.33664 53 16 4 0 0 0 0.08691 1 25107 25107 27.223 3.4335 1 64868000 80783 492 54118 55250 93951 93951 0.02194298648782933 YTKIFNDFK 9 Unmodified _YTKIFNDFK_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MSMS AL20221201_MKP_PDAC_01 4 392.5419006347656 3 392.541363 1174.60226 NaN NaN NaN NaN NaN NaN NaN 74.036 1 67.861 67.361 68.361 -6.1757 0 0 0 0.25233 1 48407 48407 20.581 0.95498 1 80784 492 54118 55250 93952 93952 0.02194298648782933 YTKIFNDFK 9 Unmodified _YTKIFNDFK_ 0 0 0 nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 nc|ENSG00000015171|Q15326-4|ZMYND11 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 392.541363 1174.60226 0.34085 0.0001338 0.3563 0.00013986 0.69715 0.00027366 392.54144243470813 46.575 0.26255 46.575 46.436 46.698 0 0.060732 0.00030455 NaN 27.223 20 11 2 NaN NaN NaN NaN 0 NaN NaN 0 2581100 80785 492 54118 55250 0.02194298648782933 YTKLKKIFLQH 11 Unmodified _YTKLKKIFLQH_ 0 0 0 nc|ENSG00000133105|Q8WXD0-2|RXFP2;ENSG00000133105|ENST00000298386|RXFP2 nc|ENSG00000133105|Q8WXD0-2|RXFP2 nc|ENSG00000133105|Q8WXD0-2|RXFP2 MSMS AL20221201_MKP_PDAC_01 4 709.9345092773438 2 709.929554 1417.84456 NaN NaN NaN NaN NaN NaN NaN 105.58 1 99.401 98.901 99.901 -6.1757 0 0 0 0.94002 1 70733 70733 2.4985 1.169 1 80786 4487 54119 55251 93953 93953 0.15234748724810743 YTKNQKVLL 9 Unmodified _YTKNQKVLL_ 0 0 0 REV__ENST00000473684.5_3_3:119149608-119149695:-|nuORF REV__ENST00000473684.5_3_3:119149608-119149695:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.2593994140625 2 553.832049 1105.64954 0.82938 0.00045934 -1.4071 -0.00077931 -0.57775 -0.00031997 553.8312397266496 65.051 0.74971 58.875 58.412 59.162 -6.1757 60 41 2 0 0 0 0.19891 1 41870 41870 11.64 3.047 1 10397000 + 80787 27549 54120 55252 93954 93954 0.10094577919812764 YTKPEEHF 8 Unmodified _YTKPEEHF_ 0 0 0 REV__nc|ENSG00000187098|O75030-2|MITF REV__nc|ENSG00000187098|O75030-2|MITF MULTI-MSMS AL20221201_MKP_PDAC_01 4 350.8342895507812 3 350.834547 1049.48181 0.96708 0.00033928 -0.58331 -0.00020465 0.38377 0.00013464 350.8345183678816 24.345 0.36912 21.517 21.34 21.709 -2.8273 43 20 3 0 0 0 0.77907 1 13212 13212 7.2892 0 1 8788500 + 80788 23619 54121 55253 93955 93955 -0.04095109344825687 YTKPLARVL 9 Unmodified _YTKPLARVL_ 0 0 0 REV__ENSG00000198626|ENST00000366574|RYR2 REV__ENSG00000198626|ENST00000366574|RYR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 530.8291015625 2 530.829309 1059.64407 0.23967 0.00012722 0.074585 3.9592E-05 0.31425 0.00016681 530.8292362040863 75.159 0.59559 75.205 74.94 75.535 0.045959 49 28 2 0 0 0 0.5029 1 41400 41400 7.2892 1.0834 1 7673800 + 80789 24033 54122 55254 93956 93956 0.11662899127986748 YTKPNPNQI 9 Unmodified _YTKPNPNQI_ 0 0 0 ENSG00000149480|ENST00000278823|MTA2;nc|ENSG00000149480|O94776-2|MTA2 ENSG00000149480|ENST00000278823|MTA2 ENSG00000149480|ENST00000278823|MTA2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.7822265625 2 537.782556 1073.55056 -0.5023 -0.00027013 0.34669 0.00018644 -0.15562 -8.3687E-05 537.782846428945 27.608 0.21258 27.608 27.488 27.7 0 22 9 3 0 0 0 0.009483 1 14222 14222 81.89 49.105 1 3294800 80790 6010 54123 55255 93957 93957 0.016725549548937124 YTKQFSCVSL 10 Unmodified _YTKQFSCVSL_ 0 0 0 ENST00000565781.5_1_16:56533650-56533881:-|nuORF ENST00000565781.5_1_16:56533650-56533881:-|nuORF ENST00000565781.5_1_16:56533650-56533881:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.2901000976562 2 588.291899 1174.56925 NaN NaN NaN NaN NaN NaN NaN 56.715 1 56.647 56.147 57.147 -0.068737 0 0 0 0.76313 1 30860 30860 13.906 1.3745 1 80791 15411 54124 55256 93958 93958 -0.011056514655592764 YTKSLAVFPF 10 Unmodified _YTKSLAVFPF_ 0 0 0 REV__nc|ENSG00000162551|P05186-3|ALPL REV__nc|ENSG00000162551|P05186-3|ALPL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 391.5489196777344 3 391.549859 1171.62775 -0.049069 -1.9213E-05 -1.2065 -0.00047242 -1.2556 -0.00049163 391.5495868649303 40.103 0.19892 40.103 39.993 40.192 0 14 9 2 0 0 0 0.6606 1 21566 21566 3.8763 0.88109 1 2081000 + 80792 21656 54125 55257 93959 93959 0.048797731712284076 YTKSSYEKI 9 Unmodified _YTKSSYEKI_ 0 0 0 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 REV__nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.2921142578125 2 559.790047 1117.56554 0.38534 0.00021571 0.55533 0.00031087 0.94066 0.00052657 560.2916741691397 91.989 0.19848 91.989 91.858 92.056 0 19 11 2 0 0 0 0.49272 1 50885 50885 7.9102 0.62092 1 540020 + 80793 18337 54126 55258 93960 93960 0.011460020322374476 YTKVYNYVK 9 Unmodified _YTKVYNYVK_ 0 0 0 CELA3B-PRSS1|1|fusion;ENST00000463701.1_1_7:142459574-142460868:+|nuORF;ENSG00000204983|ENST00000311737|PRSS1;CON__P07477;CTRB1-PRSS1|1|fusion;chr7:142750714-142751069|62|16.73|0.37|5.51|+|ENST00000486171|PRSS1,PRSS1 CELA3B-PRSS1|1|fusion CELA3B-PRSS1|1|fusion MSMS AL20221201_MKP_PDAC_01 4 393.5368041992188 3 393.213246 1176.61791 NaN NaN NaN NaN NaN NaN NaN 17.679 1 15.092 14.592 15.592 -2.5866 0 0 0 0.6306 1 9266 9266 7.609 1.8255 1 + 80794 59 54127 55259 93961 93961 0.036665851658199244 YTKYRPLFGYW 11 Unmodified _YTKYRPLFGYW_ 0 0 0 ENSG00000258659|ENST00000429814|TRIM34;ENST00000495668.1_1_11:5664055-5664936:+|nuORF ENSG00000258659|ENST00000429814|TRIM34 ENSG00000258659|ENST00000429814|TRIM34 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 747.3822631835938 2 747.382437 1492.75032 NaN NaN NaN NaN NaN NaN NaN 75.944 1 75.944 75.444 76.444 0 0 0 0 0.94301 1 42234 42234 0.35063 0.043601 1 80795 10819 54128 55260 93962 93962 0.023656099026538868 YTLASYRQL 9 Unmodified _YTLASYRQL_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.80126953125 2 557.798206 1113.58186 0.59306 0.00033081 0.35758 0.00019946 0.95064 0.00053027 557.80047962547 67.663 0.38335 67.681 67.572 67.955 0.018028 55 18 4 0 0 0 0.15471 1 37227 37227 27.629 2.6378 1 12997000 80796 15911 54129 55261 93963 93963 0.029611279890104925 YTLAVNSHPI 10 Unmodified _YTLAVNSHPI_ 0 0 0 ENSG00000147113|ENST00000398000|DIPK2B ENSG00000147113|ENST00000398000|DIPK2B ENSG00000147113|ENST00000398000|DIPK2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.2996826171875 2 557.798206 1113.58186 1.0483 0.00058471 1.7047 0.0009509 2.753 0.0015356 557.7996488727367 83.279 0.79775 77.104 76.731 77.528 -6.1757 66 42 2 0 0 0 0.34249 1 54559 54559 24.991 0 1 10652000 80797 5820 54130 55262 93964 93964 0.029611279890104925 YTLDARREVT 10 Unmodified _YTLDARREVT_ 0 0 0 REV__ENST00000568689.5_1_16:733170-734340:-|nuORF REV__ENST00000568689.5_1_16:733170-734340:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 408.5513000488281 3 408.55081 1222.6306 -0.19545 -7.9851E-05 1.1936 0.00048766 0.99819 0.00040781 408.55146297526926 15.268 0.11113 15.274 15.206 15.317 0.0057764 8 5 2 0 0 0 0.70734 1 7605 7605 2.086 0.34373 1 571750 + 80798 28950 54131 55263 93965 93965 0.028189965580850185 YTLDARREVT 10 Unmodified _YTLDARREVT_ 0 0 0 REV__ENST00000568689.5_1_16:733170-734340:-|nuORF REV__ENST00000568689.5_1_16:733170-734340:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 408.55081 1222.6306 -0.5409 -0.00022098 0.73675 0.000301 0.19586 8.0017E-05 408.5511379804785 15.432 0.12491 15.418 15.372 15.497 -0.014067 0.087334 -0.00028765 NaN 2.086 57 40 2 NaN NaN NaN NaN 0 NaN NaN 0 658290 + 80799 28950 54131 55263 0.028189965580850185 YTLDARREVT 10 Unmodified _YTLDARREVT_ 0 0 0 REV__ENST00000568689.5_1_16:733170-734340:-|nuORF REV__ENST00000568689.5_1_16:733170-734340:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 408.55081 1222.6306 -0.19545 -7.9851E-05 1.1936 0.00048766 0.99819 0.00040781 408.55146297526926 15.268 0.11113 15.274 15.206 15.317 0.0057764 -0.05658 0.00027233 NaN 2.086 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 571750 + 80800 28950 54131 55263 0.028189965580850185 YTLDEHLEI 9 Unmodified _YTLDEHLEI_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.1899108886719 3 378.188878 1131.5448 NaN NaN NaN NaN NaN NaN NaN 15.128 1 15.128 14.628 15.628 0 0 0 0 0.84564 1 7261 7261 1.0715 0.29493 1 80801 9083 54132 55264 93966 93966 -0.015705883474311122 YTLDEHLEI 9 Unmodified _YTLDEHLEI_ 0 0 0 ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA ENSG00000182752|ENST00000328252|PAPPA MSMS AL20221201_MKP_PDAC_01 4 378.2149047851562 3 378.188878 1131.5448 NaN NaN NaN NaN NaN NaN NaN 19.194 1 16.538 16.038 17.038 -2.6564 0 0 0 0.84564 1 10147 10147 1.0715 0 1 80802 9083 54132 55264 93967 93967 -0.015705883474311122 YTLFEKMDP 9 Unmodified _YTLFEKMDP_ 0 0 0 ENST00000513648.5_1_5:102201854-102209236:+|nuORF ENST00000513648.5_1_5:102201854-102209236:+|nuORF ENST00000513648.5_1_5:102201854-102209236:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.7737426757812 2 572.273175 1142.5318 0.92754 0.0005308 0.4964 0.00028407 1.4239 0.00081488 572.2730214155168 47.112 0.41798 42.031 41.919 42.337 -5.0805 50 29 2 0 0 0 0.16226 1 29168 29168 26.884 0 1 29824000 80803 14641 54133 55265 93968 93968 -0.03376742731165905 YTLGEVELW 9 Unmodified _YTLGEVELW_ 0 0 0 REV__ENST00000357258.8_2_3:114050578-114050665:-|nuORF REV__ENST00000357258.8_2_3:114050578-114050665:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 555.2523803710938 2 555.279315 1108.54408 1.2696 0.00070499 -0.38875 -0.00021587 0.88086 0.00048912 555.2789682813041 86.713 0.938 80.537 79.957 80.895 -6.1757 88 50 2 0 0 0 0.17275 1 57362 57362 15.847 0 1 19854000 + 80804 25846 54134 55266 93969 93969 -0.005853829964735269 YTLGIPQLVER 11 Unmodified _YTLGIPQLVER_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8677368164062 2 644.86662 1287.71869 0.37395 0.00024115 1.4871 0.00095898 1.861 0.0012001 644.8676729289375 79.55 0.3784 79.605 79.391 79.77 0.05497 25 14 2 0 0 0 0.63534 1 43949 43949 9.544 4.2471 1 1706000 + 80805 24227 54135 55267 93970 93970 0.08633617148689154 YTLGIPQLVER 11 Unmodified _YTLGIPQLVER_ 0 0 0 REV__ENSG00000205413|ENST00000379958|SAMD9 REV__ENSG00000205413|ENST00000379958|SAMD9 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 644.8675537109375 2 644.86662 1287.71869 NaN NaN NaN NaN NaN NaN NaN 77.418 1 77.468 76.968 77.968 0.05011 0 0 0 0.6061 1 42729 42729 20.581 2.2078 1 + 80806 24227 54135 55267 93971 93971 0.08633617148689154 YTLHKAIDY 9 Unmodified _YTLHKAIDY_ 0 0 0 REV__nc|ENSG00000103769|P62491-2|RAB11A REV__nc|ENSG00000103769|P62491-2|RAB11A MSMS AL20221201_MKP_PDAC_01 4 562.2852783203125 2 562.292756 1122.57096 NaN NaN NaN NaN NaN NaN NaN 50.126 1 44.587 44.087 45.087 -5.5391 0 0 0 0.41346 1 31399 31399 19.257 5.3509 1 + 80807 18325 54136 55268 93972 93972 0.014577256147049411 YTLHSHQRFA 10 Unmodified _YTLHSHQRFA_ 0 0 0 REV__ENSG00000120784|ENST00000684514|ZFP30 REV__ENSG00000120784|ENST00000684514|ZFP30 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.2783813476562 2 630.317628 1258.6207 -0.32935 -0.00020759 2.5011 0.0015765 2.1718 0.0013689 630.318762728777 60.539 0.19906 60.049 59.99 60.189 -0.48932 15 9 2 0 0 0 0.67033 1 32940 32940 6.2058 2.2614 1 3356100 + 80808 19261 54137 55269 93973 93973 0.001738533433581324 YTLKKNNTL 9 Unmodified _YTLKKNNTL_ 0 0 0 REV__ENSG00000160505|ENST00000301295|NLRP4 REV__ENSG00000160505|ENST00000301295|NLRP4 MSMS AL20221201_MKP_PDAC_01 4 547.81201171875 2 547.813856 1093.61316 NaN NaN NaN NaN NaN NaN NaN 87.713 1 81.538 81.038 82.038 -6.1757 0 0 0 0.39043 1 57847 57847 20.454 2.3073 1 + 80809 21548 54138 55270 93974 93974 0.07009701023071102 YTLKRFFFKWI 11 Unmodified _YTLKRFFFKWI_ 0 0 0 REV__ENSG00000184544|ENST00000571134|DHRS7C REV__ENSG00000184544|ENST00000571134|DHRS7C MSMS AL20221201_MKP_PDAC_01 4 516.9607543945312 3 516.962374 1547.86529 NaN NaN NaN NaN NaN NaN NaN 78.556 1 72.38 71.88 72.88 -6.1757 0 0 0 0.93737 1 51429 51429 4.4062 3.1913 1 + 80810 23423 54139 55271 93975 93975 0.11327339104445855 YTLLFGAGML 10 Unmodified _YTLLFGAGML_ 0 0 0 REV__ENST00000533866.1_1_19:52146610-52148823:-|nuORF REV__ENST00000533866.1_1_19:52146610-52148823:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 543.2883911132812 2 543.288628 1084.5627 0.53995 0.00029335 -1.9736 -0.0010722 -1.4336 -0.00077886 543.2868610143294 50.835 0.31229 50.781 50.589 50.901 -0.053871 49 15 4 0 0 0 0.2829 1 27498 27498 28.487 1.6032 1 9636800 + 80811 24521 54140 55272 93976 93976 0.023804553737363676 YTLLGFKTF 9 Unmodified _YTLLGFKTF_ 0 0 0 ENSG00000154262|ENST00000284425|ABCA6 ENSG00000154262|ENST00000284425|ABCA6 ENSG00000154262|ENST00000284425|ABCA6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 545.3014526367188 2 545.302593 1088.59063 1.0438 0.0005692 -1.8347 -0.0010005 -0.79084 -0.00043125 545.3012658002516 62.339 0.65796 56.164 55.905 56.563 -6.1757 48 35 2 0 0 0 0.23158 1 40184 40184 20.454 1.1966 1 65159000 80812 6313 54141 55273 93977 93977 0.049881016254630595 YTLLLYLILL 10 Unmodified _YTLLLYLILL_ 0 0 0 ENST00000346329.7_1_11:70281328-70281493:+|nuORF ENST00000346329.7_1_11:70281328-70281493:+|nuORF ENST00000346329.7_1_11:70281328-70281493:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.3938598632812 2 619.393951 1236.77335 NaN NaN NaN NaN NaN NaN NaN 17.847 1 17.852 17.352 18.352 0.0050564 0 0 0 1.0061 1 9021 9021 0 0 1 80813 12030 54142 55274 93978 93978 0.16443235967426517 YTLLYPFP 8 Unmodified _YTLLYPFP_ 0 0 0 REV__ENSG00000168152|ENST00000302236|THAP9 REV__ENSG00000168152|ENST00000302236|THAP9 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 507.8009948730469 2 507.270761 1012.52697 -0.12397 -6.2887E-05 -0.80429 -0.00040799 -0.92826 -0.00047088 507.27076395995016 54.211 0.21614 53.744 53.606 53.822 -0.46664 22 10 3 0 0 0 8.7369 1 29357 29357 10.183 0.83596 1 3108000 + 80814 22295 54143 55275 93979 93979 0.02120741188377906 YTLMGEWKMGS 11 Unmodified _YTLMGEWKMGS_ 0 0 0 NPY2R|p.P120S|1|0.14|ENSG00000185149|chr4:155214297-155214297|C/T|missense_variant NPY2R|p.P120S|1|0.14|ENSG00000185149|chr4:155214297-155214297|C/T|missense_variant NPY2R|p.P120S|1|0.14|ENSG00000185149|chr4:155214297-155214297|C/T|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 651.7973022460938 2 651.796491 1301.57843 NaN NaN NaN NaN NaN NaN NaN 47.746 1 47.394 46.894 47.894 -0.3526 0 0 0 0.93613 1 25601 25601 5.2969 0 1 80815 16675 54144 55276 93980 93980 -0.060296261715393484 YTLMQLVKI 9 Unmodified _YTLMQLVKI_ 0 0 0 ENST00000567273.1_1_X:37798839-37798923:+|nuORF ENST00000567273.1_1_X:37798839-37798923:+|nuORF ENST00000567273.1_1_X:37798839-37798923:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 554.7753295898438 2 554.825378 1107.6362 NaN NaN NaN NaN NaN NaN NaN 57.117 1 56.632 56.132 57.132 -0.48554 0 0 0 0.6032 1 31037 31037 12.532 0 1 80816 15435 54145 55277 93981 93981 0.08669003816203258 YTLNEDWLL 9 Unmodified _YTLNEDWLL_ 0 0 0 ENSG00000136040|ENST00000258526|PLXNC1;ENST00000549187.1_1_12:94658920-94673460:+|nuORF ENSG00000136040|ENST00000258526|PLXNC1 ENSG00000136040|ENST00000258526|PLXNC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 583.7911376953125 2 583.790047 1165.56554 NaN NaN NaN NaN NaN NaN NaN 68.026 1 68.026 67.526 68.526 0 0 0 0 0.82396 1 37930 37930 4.756 0 1 80817 4778 54146 55278 93982 93982 -0.010619979677585434 YTLQDDILSF 10 Unmodified _YTLQDDILSF_ 0 0 0 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 607.8012084960938 2 607.800611 1213.58667 -0.40773 -0.00024782 1.2688 0.00077116 0.86104 0.00052334 608.3028455600148 77.175 0.32953 76.692 76.497 76.827 -0.4826 32 14 3 0 0 0 0.52888 1 42262 42262 14.838 1.7958 1 2356600 80818 3302 54147 55279 93983 93983 -0.011580326589182732 YTLQDDILSF 10 Unmodified _YTLQDDILSF_ 0 0 0 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 ENSG00000117408|ENST00000372343|IPO13 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7971801757812 2 607.800611 1213.58667 -0.15474 -9.4053E-05 -4.3564 -0.0026478 -4.5111 -0.0027419 607.7969403139932 84.95 0.34509 78.774 78.548 78.893 -6.1757 27 19 2 0 0 0 0.23548 1 55883 55883 31.268 9.5217 1 20339000 80819 3302 54147 55279 93984 93984 -0.011580326589182732 YTLRCCPQVH 10 Unmodified _YTLRCCPQVH_ 0 0 0 ENST00000546999.5_1_12:96374470-96386548:-|nuORF;nc|ENSG00000084110|P42357-3|HAL;nc|ENSG00000084110|P42357-2|HAL;ENSG00000084110|ENST00000261208|HAL ENST00000546999.5_1_12:96374470-96386548:-|nuORF ENST00000546999.5_1_12:96374470-96386548:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.2916870117188 2 610.289168 1218.56378 NaN NaN NaN NaN NaN NaN NaN 75.459 1 74.982 74.482 75.482 -0.47714 0 0 0 0.99091 1 41308 41308 1.6526 0.17072 1 80820 1384 54148 55280 93985 93985 -0.03675653529012379 YTLRGFRA 8 Unmodified _YTLRGFRA_ 0 0 0 ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.275390625 2 492.274701 982.534849 0.77999 0.00038397 0.8489 0.00041789 1.6289 0.00080186 492.2750165431852 30.351 0.23386 30.27 30.153 30.387 -0.080431 22 8 3 0 0 0 0.64853 1 15740 15740 21.747 3.6117 1 7380500 80821 15087 54149 55281 93986 93986 0.04288313228516927 YTLRGFRA 8 Unmodified _YTLRGFRA_ 0 0 0 ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF ENST00000545294.5_1_1:162492490-162492613:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 492.2751159667969 2 492.274701 982.534849 0.8006 0.00039412 -0.14071 -6.9266E-05 0.6599 0.00032485 492.2746020643272 34.37 0.44596 30.275 30.057 30.503 -4.0951 49 25 2 0 0 0 0.64853 2 19724 19724;19852 21.747 8.2388 1 63520000 80822 15087 54149 55281 93987;93988 93987 0.04288313228516927 YTLRIKLAR 9 Unmodified _YTLRIKLAR_ 0 0 0 ENST00000475219.6_1_19:37064416-37065777:+|nuORF ENST00000475219.6_1_19:37064416-37065777:+|nuORF ENST00000475219.6_1_19:37064416-37065777:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.2412414550781 3 378.576631 1132.70806 NaN NaN NaN NaN NaN NaN NaN 65.692 1 59.516 59.016 60.016 -6.1757 0 0 0 0.65645 1 42660 42660 10.8 1.4164 1 80823 13956 54150 55282 93989 93989 0.1470167928491719 YTLRNNDVK 9 Unmodified _YTLRNNDVK_ 0 0 0 ENSG00000176555|ENST00000319988|OR4S1 ENSG00000176555|ENST00000319988|OR4S1 ENSG00000176555|ENST00000319988|OR4S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 374.8699340820312 3 374.86825 1121.58292 1.3315 0.00049913 0.61859 0.00023189 1.9501 0.00073102 375.202217123067 42.094 0.65882 37.41 37.051 37.709 -4.6846 132 41 4 0 0 0 0.45045 1 25485 25485 6.6304 1.3335 1 58901000 80824 8603 54151 55283 93990 93990 0.0269934235789151 YTLRNTEVK 9 Unmodified _YTLRNTEVK_ 0 0 0 ENSG00000196242|ENST00000641802|OR2C3;ENSG00000176540|ENST00000319813|OR4C5 ENSG00000196242|ENST00000641802|OR2C3 ENSG00000196242|ENST00000641802|OR2C3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 562.309814453125 2 562.308938 1122.60332 0.77371 0.00043506 -0.9589 -0.0005392 -0.18519 -0.00010414 562.308099590686 47.782 0.24739 47.429 47.308 47.555 -0.3526 23 11 3 0 0 0 0.14 1 25619 25619 29.082 3.6823 1 4359700 80825 9787 54152 55284 93991 93991 0.046925130176987295 YTLRRQEARPA 11 Unmodified _YTLRRQEARPA_ 0 0 0 ENST00000590513.2_1_17:40705339-40705789:-|nuORF ENST00000590513.2_1_17:40705339-40705789:-|nuORF ENST00000590513.2_1_17:40705339-40705789:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 680.8768310546875 2 680.875842 1359.73713 1.408 0.00095865 0.52152 0.00035509 1.9295 0.0013137 680.8762644567579 37.843 0.23086 33.474 33.334 33.565 -4.3689 23 13 2 0 0 0 0.58245 1 22236 22236 15.248 0 1 5817800 80826 15686 54153 55285 93992 93992 0.07165171843257667 YTLSKCYL 8 Unmodified _YTLSKCYL_ 0 0 0 nc|ENSG00000154889|Q53F39-4|MPPE1;ENSG00000154889|ENST00000588072|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 nc|ENSG00000154889|Q53F39-4|MPPE1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 495.7516479492188 2 495.751879 989.489204 NaN NaN NaN NaN NaN NaN NaN 40.437 1 40.437 39.937 40.937 0 0 0 0 0.60022 1 21732 21732 34.102 10.954 1 80827 6355 54154 55286 93993 93993 -0.005960930687592736 YTLSLEPET 9 Unmodified _YTLSLEPET_ 0 0 0 nc|ENSG00000171777|Q8TDF6-6|RASGRP4;nc|ENSG00000171777|Q8TDF6-7|RASGRP4;nc|ENSG00000171777|Q8TDF6-5|RASGRP4;nc|ENSG00000171777|Q8TDF6-9|RASGRP4;nc|ENSG00000171777|Q8TDF6-8|RASGRP4;nc|ENSG00000171777|Q8TDF6-2|RASGRP4;ENSG00000171777|ENST00000615439|RASGRP4;ENST00000588708.5_1_19:38900682-38904049:-|nuORF nc|ENSG00000171777|Q8TDF6-6|RASGRP4;ENST00000588708.5_1_19:38900682-38904049:-|nuORF nc|ENSG00000171777|Q8TDF6-6|RASGRP4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 526.7620239257812 2 526.760955 1051.50736 0.34855 0.0001836 -0.2549 -0.00013427 0.093641 4.9326E-05 526.7607413547086 46.95 1.1975 46.95 46.718 47.916 0 164 56 5 0 0 0 0.41742 1 25871 25871 11.64 0 1 1334800000 80828 8138;15653 54155 55287 93994 93994 -0.016336796130417497 YTLSSRTDN 9 Unmodified _YTLSSRTDN_ 0 0 0 REV__ENSG00000156140|ENST00000286657|ADAMTS3 REV__ENSG00000156140|ENST00000286657|ADAMTS3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7521362304688 2 528.751453 1055.48835 0.66984 0.00035418 0.33452 0.00017688 1.0044 0.00053106 528.7516426866024 53.473 0.34552 53.473 53.281 53.627 0 34 15 3 0 0 0 0.16226 1 29619 29619 26.884 6.0124 1 12907000 + 80829 21314 54156 55288 93995 93995 -0.03717216184077188 YTLSWVNTR 9 Unmodified _YTLSWVNTR_ 0 0 0 ENSG00000053328|ENST00000338882|METTL24 ENSG00000053328|ENST00000338882|METTL24 ENSG00000053328|ENST00000338882|METTL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 570.2962036132812 2 570.29583 1138.57711 2.5725 0.0014671 -1.7119 -0.00097631 0.86054 0.00049076 570.2947534994299 99.949 0.19126 99.912 99.771 99.962 -0.036301 16 6 3 0 0 0 0.36964 1 55501 55501 13.906 0 1 3251700 80830 743 54157 55289 93996 93996 0.013362438462081627 YTLTGKSGEI 10 Unmodified _YTLTGKSGEI_ 0 0 0 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 534.7813720703125 2 534.782222 1067.54989 NaN NaN NaN NaN NaN NaN NaN 37.651 1 33.282 32.782 33.782 -4.3689 0 0 0 0.40102 1 22121 22121 31.268 7.2478 1 80831 4775 54158 55290 93997 93997 0.01881715515196447 YTLTGKSGEI 10 Unmodified _YTLTGKSGEI_ 0 0 0 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant;ENSG00000136011|ENST00000388887|STAB2 STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant STAB2|p.F2200Ifs*20|1|0.05|ENSG00000136011|chr12:103753236-103753237|-/ATAACAAGAGATCCAATATTCATATTAA|frameshift_variant MSMS AL20221201_MKP_PDAC_01 4 534.7784423828125 2 534.782222 1067.54989 NaN NaN NaN NaN NaN NaN NaN 37.837 1 33.468 32.968 33.968 -4.3689 0 0 0 0.33727 1 22243 22243 34.932 2.6266 1 80832 4775 54158 55290 93998 93998 0.01881715515196447 YTLTWYRL 8 Unmodified _YTLTWYRL_ 0 0 0 REV__nc|ENSG00000170835|P19835-2|CEL REV__nc|ENSG00000170835|P19835-2|CEL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 558.2965087890625 2 558.297842 1114.58113 0.50441 0.00028161 -1.6817 -0.00093889 -1.1773 -0.00065728 558.2971397787798 65.138 0.23859 64.653 64.575 64.814 -0.48428 14 10 2 0 0 0 0.77907 1 35574 35574 10.183 1.5901 1 1453500 + 80833 22514 54159 55291 93999 93999 0.028423333399359763 YTLVMRCHF 9 Unmodified _YTLVMRCHF_ 0 0 0 REV__ENST00000523237.1_1_8:1721944-1728730:+|nuORF REV__ENST00000523237.1_1_8:1721944-1728730:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2861328125 2 585.283354 1168.55216 NaN NaN NaN NaN NaN NaN NaN 72.463 1 71.987 71.487 72.487 -0.47609 0 0 0 0.82396 1 39655 39655 4.756 1.1595 1 + 80834 23268 54160 55292 94000 94000 -0.025378505523576678 YTMEVYED 8 Unmodified _YTMEVYED_ 0 0 0 ENSG00000154162|ENST00000382254|CDH12;nc|ENSG00000154162|P55289-2|CDH12;ENST00000521384.5_1_5:21751848-21889748:-|nuORF ENSG00000154162|ENST00000382254|CDH12 ENSG00000154162|ENST00000382254|CDH12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 525.2109985351562 2 525.21024 1048.40593 0.62603 0.0003288 -0.16954 -8.9044E-05 0.45649 0.00023975 525.2102766881695 67.814 0.31362 67.814 67.621 67.934 0 29 14 3 0 0 0 0.74163 1 37747 37747 13.508 0 1 2041600 80835 6301 54161 55293 94001 94001 -0.11633874307244696 YTMFIFVAF 9 Unmodified _YTMFIFVAF_ 0 0 0 REV__nc|ENSG00000120217|Q9NZQ7-2|CD274 REV__nc|ENSG00000120217|Q9NZQ7-2|CD274 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.8770141601562 3 380.192906 1137.55689 -0.58542 -0.00022257 0.97255 0.00036976 0.38713 0.00014718 380.1932477068915 26.673 0.39996 26.673 26.468 26.868 0 28 18 2 0 0 0 0.20528 1 13649 13649 8.7454 4.8691 1 750710 + 80836 19232 54162 55294 94002 94002 -0.006386431379269197 YTMKVFAKV 9 Unmodified _YTMKVFAKV_ 0 0 0 ENST00000481528.1_1_1:52926763-52927313:-|nuORF ENST00000481528.1_1_1:52926763-52927313:-|nuORF ENST00000481528.1_1_1:52926763-52927313:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5538635253906 3 362.872056 1085.59434 1.2558 0.0004557 -0.49096 -0.00017815 0.76487 0.00027755 362.87242621264477 50.287 0.30648 50.238 50.107 50.413 -0.048824 19 14 2 0 0 0 0.21367 1 27189 27189 2.7352 0 1 647630 80837 14085 54163 55295 94003 94003 0.05496448127678377 YTMQEMMVL 9 Unmodified _YTMQEMMVL_ 0 0 0 REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5062866210938 3 382.506168 1144.49667 -0.013526 -5.174E-06 0.58899 0.00022529 0.57546 0.00022012 382.506275926539 62.358 0.4026 62.358 62.23 62.633 0 48 26 2 0 0 0 0.5029 1 34850 34850 4.5289 0 1 41611000 + 80838 29922 54164 55296 94004 94004 -0.06979444854960093 YTMQEMMVL 9 Unmodified _YTMQEMMVL_ 0 0 0 REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.7615966796875 2 573.255613 1144.49667 0.68371 0.00039194 0.2954 0.00016934 0.97911 0.00056128 573.2555159044782 62.817 0.31661 62.331 62.185 62.501 -0.48617 42 15 4 0 0 0 0.54444 1 34288 34288 4.756 2.4533 1 15925000 + 80839 29922 54164 55296 94005 94005 -0.06979444854960093 YTMRRRWTL 9 Unmodified _YTMRRRWTL_ 0 0 0 REV__ENST00000539638.5_1_12:9264779-9266002:-|nuORF REV__ENST00000539638.5_1_12:9264779-9266002:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 641.8472290039062 2 641.845499 1281.67644 0.60969 0.00039132 2.0015 0.0012847 2.6112 0.001676 641.8468900666334 49.308 0.18053 49.265 49.134 49.315 -0.04369 13 8 2 0 0 0 0.21834 1 26658 26658 1.8442 1.8442 1 1841200 + 80840 28566 54165 55297 94006 94006 0.046873632593360526 YTMSIKRQPYA 11 Unmodified _YTMSIKRQPYA_ 0 0 0 REV__RHCE|p.H260Y|1|0.1|ENSG00000188672|chr1:25390772-25390772|G/A|missense_variant REV__RHCE|p.H260Y|1|0.1|ENSG00000188672|chr1:25390772-25390772|G/A|missense_variant MSMS AL20221201_MKP_PDAC_01 4 679.3466796875 2 679.35028 1356.68601 NaN NaN NaN NaN NaN NaN NaN 90.467 1 84.291 83.791 84.791 -6.1757 0 0 0 0.86932 1 59760 59760 8.7454 2.0222 1 + 80841 30089 54166 55298 94007 94007 0.02193086754232354 YTMTQLEYD 9 Unmodified _YTMTQLEYD_ 0 0 0 REV__nc|ENSG00000151914|Q03001|DST;REV__ENSG00000151914|ENST00000680361|DST;REV__nc|ENSG00000151914|Q03001-3|DST REV__ENSG00000151914|ENST00000680361|DST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 388.5022277832031 3 388.502357 1162.48524 0.75358 0.00029277 -0.035791 -1.3905E-05 0.71779 0.00027886 388.50238768479653 75.403 0.51807 74.926 74.63 75.148 -0.47713 64 27 3 0 0 0 0.51218 1 41293 41293 4.1895 0 1 5183500 + 80842 29707;21097;29706 54167 55299 94008 94008 -0.08950227353125229 YTNALHAWGF 10 Unmodified _YTNALHAWGF_ 0 0 0 REV__nc|ENSG00000148700|Q9UEY8-2|ADD3 REV__nc|ENSG00000148700|Q9UEY8-2|ADD3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 393.8581237792969 3 393.857574 1178.55089 NaN NaN NaN NaN NaN NaN NaN 17.306 1 17.306 16.806 17.806 0 0 0 0 0.96981 1 8516 8516 1.9064 0.1641 1 + 80843 20963 54168 55300 94009 94009 -0.03124025325269031 YTNATFVAVI 10 Unmodified _YTNATFVAVI_ 0 0 0 REV__nc|ENSG00000291317|P0DTL5|TMEM276 REV__nc|ENSG00000291317|P0DTL5|TMEM276 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.7939453125 2 549.795132 1097.57571 1.0654 0.00058576 -0.60433 -0.00033226 0.46109 0.0002535 549.7948275272257 81.298 0.85313 75.122 74.679 75.532 -6.1757 170 48 5 0 0 0 0.62068 1 53067 53067 10.074 0.6908 1 686430000 + 80844 30039 54169 55301 94010 94010 0.030826097574845335 YTNDGDMEALE 11 Unmodified _YTNDGDMEALE_ 0 0 0 ENST00000599063.5_1_19:48601366-48609786:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C ENST00000599063.5_1_19:48601366-48609786:-|nuORF ENST00000599063.5_1_19:48601366-48609786:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 631.7576293945312 2 629.250625 1256.4867 -0.30276 -0.00019051 0.63659 0.00040057 0.33383 0.00021006 629.2511399379312 40.853 0.70991 40.853 40.675 41.385 0 312 54 7 0 0 0 0.69316 1 22061 22061 4.897 1.3005 1 498120000 80845 2331 54170 55302 94011 94011 -0.13128638054990915 YTNFGIVSL 9 Unmodified _YTNFGIVSL_ 0 0 0 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 ENSG00000123684|ENST00000366997|LPGAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2677917480469 2 507.26875 1012.52295 0.38988 0.00019777 -1.0927 -0.0005543 -0.70284 -0.00035653 507.2682347799266 64.039 0.24102 64.039 63.906 64.147 0 15 9 2 0 0 0 0.49272 1 35751 35751 7.9102 2.1497 1 615430 80846 3726 54171 55303 94012 94012 0.017186516946708252 YTNGYEEMTF 10 Unmodified _YTNGYEEMTF_ 0 0 0 ENSG00000106624|ENST00000223357|AEBP1 ENSG00000106624|ENST00000223357|AEBP1 ENSG00000106624|ENST00000223357|AEBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 627.7545776367188 2 627.752804 1253.49105 0.32513 0.0002041 1.2338 0.00077454 1.559 0.00097864 627.7533353110122 68.914 0.2349 68.914 68.764 68.998 0 13 9 2 0 0 0 0.69377 1 38370 38370 3.5965 0 1 696440 80847 2446 54172 55304 94013 94013 -0.12555128841449914 YTNIQETYF 9 Unmodified _YTNIQETYF_ 0 0 0 nc|ENSG00000155657|Q8WZ42-12|TTN;ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN nc|ENSG00000155657|Q8WZ42-12|TTN nc|ENSG00000155657|Q8WZ42-12|TTN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2650756835938 2 589.771854 1177.52915 0.36483 0.00021516 -2.295 -0.0013535 -1.9301 -0.0011383 589.7712497758346 60.812 0.50959 60.812 60.514 61.024 0 49 18 4 0 0 0 0.5029 1 33840 33840 7.2892 0 1 2612300 80848 6400 54173 55305 94014 94014 -0.05250874864486832 YTNQMGNTLSI 11 Unmodified _YTNQMGNTLSI_ 0 0 0 ENST00000310045.7_1_18:65181870-65181927:-|nuORF ENST00000310045.7_1_18:65181870-65181927:-|nuORF ENST00000310045.7_1_18:65181870-65181927:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 620.941162109375 2 621.29517 1240.57579 NaN NaN NaN NaN NaN NaN NaN 95.535 1 95.167 94.667 95.667 -0.36814 0 0 0 0.9435 1 52180 52180 0 0 1 80849 11673 54174 55306 94015 94015 -0.034877583048000815 YTNQRDLDL 9 Unmodified _YTNQRDLDL_ 0 0 0 ENST00000331728.8_2_22:31674601-31674808:+|nuORF ENST00000331728.8_2_22:31674601-31674808:+|nuORF ENST00000331728.8_2_22:31674601-31674808:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 379.85595703125 3 379.85601 1136.5462 1.1866 0.00045075 -0.20455 -7.7701E-05 0.98208 0.00037305 380.1904010438672 49.928 0.26341 49.88 49.763 50.027 -0.048824 25 12 3 0 0 0 0.55144 1 27032 27032 2.4985 0 1 2178300 80850 11863 54175 55307 94016 94016 -0.01660954258682068 YTNQRDLDL 9 Unmodified _YTNQRDLDL_ 0 0 0 ENST00000331728.8_2_22:31674601-31674808:+|nuORF ENST00000331728.8_2_22:31674601-31674808:+|nuORF ENST00000331728.8_2_22:31674601-31674808:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 379.85601 1136.5462 0.84826 0.00032222 0.11274 4.2824E-05 0.961 0.00036504 380.1902973153836 50.263 0.17883 49.871 49.732 49.911 -0.3923 -0.0044828 0.00020743 NaN 2.4985 12 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1398000 80851 11863 54175 55307 -0.01660954258682068 YTNRYIIF 8 Unmodified _YTNRYIIF_ 0 0 0 ENSG00000087338|ENST00000282570|GMCL1 ENSG00000087338|ENST00000282570|GMCL1 ENSG00000087338|ENST00000282570|GMCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2906494140625 2 545.290017 1088.56548 0.94887 0.00051741 4.1846 0.0022818 5.1335 0.0027992 545.2916773822751 54.438 0.37043 54.438 54.271 54.641 0 26 16 2 0 0 0 0.67481 1 30253 30253 19.439 1.304 1 1362400 80852 1468 54176 55308 94017 94017 0.024740468228856116 YTPEADPYFI 10 Unmodified _YTPEADPYFI_ 0 0 0 ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 ENSG00000049323|ENST00000404816|LTBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.783447265625 2 608.282054 1214.54956 0.95465 0.0005807 0.46952 0.0002856 1.4242 0.0008663 608.2825599920328 89.079 0.36862 82.904 82.779 83.147 -6.1757 29 20 2 0 0 0 0.47869 1 58805 58805 14.838 2.5976 1 11529000 80853 709 54177 55309 94018 94018 -0.0491370420468229 YTPESLYKEL 10 Unmodified _YTPESLYKEL_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.8143920898438 2 621.816261 1241.61797 0.67706 0.00042101 -1.0683 -0.00066427 -0.39122 -0.00024327 621.8155781948327 68.159 0.59971 68.184 67.963 68.562 0.025146 82 29 4 0 0 0 0.13391 1 37394 37394 41.84 11.203 1 25690000 80854 7527 54178 55310 94019 94019 0.006825403751918202 YTPESLYKEL 10 Unmodified _YTPESLYKEL_ 0 0 0 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 ENSG00000166750|ENST00000299977|SLFN5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.8148193359375 2 621.816261 1241.61797 -0.031431 -1.9545E-05 -2.7828 -0.0017304 -2.8143 -0.0017499 621.8141829838903 78.525 0.24573 72.349 72.255 72.5 -6.1757 23 15 2 0 0 0 0.1942 1 51424 51424 34.402 1.616 1 18863000 80855 7527 54178 55310 94020 94020 0.006825403751918202 YTPEVQSSI 9 Unmodified _YTPEVQSSI_ 0 0 0 nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 nc|ENSG00000177324|Q8NDZ0-2|BEND2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.2527465820312 2 512.253297 1022.49204 0.39395 0.0002018 -1.8599 -0.00095272 -1.4659 -0.00075092 512.2518926113175 51.612 0.36696 51.612 51.475 51.842 0 23 16 2 0 0 0 0.49272 1 28521 28521 7.9102 0 1 1981600 80856 8676 54179 55311 94021 94021 -0.018305464102354563 YTPHLKLWEV 10 Unmodified _YTPHLKLWEV_ 0 0 0 REV__ENSG00000171316|ENST00000423902|CHD7 REV__ENSG00000171316|ENST00000423902|CHD7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.3505859375 2 643.350606 1284.68666 NaN NaN NaN NaN NaN NaN NaN 102.45 1 102.33 101.83 102.83 -0.11613 0 0 0 1.0061 1 55894 55894 0 0 1 + 80857 22553 54180 55312 94022 94022 0.05570249465517918 YTPITPHL 8 Unmodified _YTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 471.7594604492188 2 471.258185 940.501818 0.51971 0.00024492 -0.072238 -3.4043E-05 0.44747 0.00021087 471.2582903432289 49.171 0.26895 48.799 48.654 48.923 -0.37172 18 12 2 0 0 0 0.5284 1 26437 26437 32.117 19.585 1 1388800 80858 3421 54181 55313 94023 94023 0.029186863857944445 YTPITPHL 8 Unmodified _YTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MSMS AL20221201_MKP_PDAC_01 4 471.2585754394531 2 471.258185 940.501818 NaN NaN NaN NaN NaN NaN NaN 54.488 1 48.622 48.122 49.122 -5.8653 0 0 0 0.34053 1 34569 34569 59.795 12.874 1 80859 3421 54181 55313 94024 94024 0.029186863857944445 YTPPFANEDR 10 Unmodified _YTPPFANEDR_ 0 0 0 REV__ENSG00000188039|ENST00000524140|NWD1 REV__ENSG00000188039|ENST00000524140|NWD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 606.781982421875 2 605.280377 1208.5462 0.2127 0.00012874 -0.10362 -6.2717E-05 0.10908 6.6023E-05 605.2805392680854 57.436 0.42041 57.436 57.111 57.532 0 68 18 6 0 0 0 0.64628 1 31872 31872 8.7454 2.0222 1 36045000 + 80860 23685 54182 55314 94025 94025 -0.04972954258664686 YTPPIWSVT 9 Unmodified _YTPPIWSVT_ 0 0 0 REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 532.2755737304688 2 532.276575 1062.5386 0.46263 0.00024625 -3.6118 -0.0019225 -3.1492 -0.0016762 532.2742489487438 83.223 0.38965 82.726 82.448 82.837 -0.49751 29 15 3 0 0 0 0.10734 1 45542 45542 32.305 1.6689 1 3888400 + 80861 27240 54183 55315 94026 94026 0.009829382117231944 YTPPPHHI 8 Unmodified _YTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 481.2474975585938 2 481.248152 960.481751 NaN NaN NaN NaN NaN NaN NaN 17.127 1 17.128 16.628 17.628 0.0010548 0 0 0 0.97444 1 8494 8494 0.79363 0 1 80862 7787 54184 55316 94027 94027 -7.064554154112557E-05 YTPPPHHI 8 Unmodified _YTPPPHHI_ 0 0 0 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 ENSG00000168653|ENST00000372969|NDUFS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 481.2484130859375 2 481.248152 960.481751 0.53935 0.00025956 -1.2541 -0.00060356 -0.7148 -0.00034399 481.2478472385463 17.493 0.23149 14.907 14.796 15.028 -2.5866 53 46 2 0 0 0 0.55063 1 9136 9136 30.198 12.063 1 3720900 80863 7787 54184 55316 94028 94028 -7.064554154112557E-05 YTPPSIDPF 9 Unmodified _YTPPSIDPF_ 0 0 0 REV__nc|ENSG00000137944|Q6YP21-2|KYAT3 REV__nc|ENSG00000137944|Q6YP21-2|KYAT3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 519.2747802734375 2 518.752933 1035.49131 0.48377 0.00025096 -0.69706 -0.0003616 -0.21329 -0.00011065 518.7526631054981 67.664 0.69557 67.182 66.822 67.518 -0.48218 48 30 2 0 0 0 0.16785 1 36922 36922 23.148 8.3102 1 1689200 + 80864 20284 54185 55317 94029 94029 -0.025013410592919172 YTPRKEDEL 9 Unmodified _YTPRKEDEL_ 0 0 0 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 ENSG00000154447|ENST00000284637|SH3RF1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.2825317382812 2 575.790578 1149.5666 0.74578 0.00042942 -1.7512 -0.0010083 -1.0054 -0.00057892 576.2888955513878 60.122 0.31701 60.122 59.962 60.279 0 29 13 3 0 0 0 0.21367 1 33595 33595 4.756 0.81161 1 2922500 80865 6325 54186 55318 94030 94030 -0.002197835988454244 YTPRRLRQ 8 Unmodified _YTPRRLRQ_ 0 0 0 ENSG00000176473|ENST00000402312|WDR25 ENSG00000176473|ENST00000402312|WDR25 ENSG00000176473|ENST00000402312|WDR25 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.3170776367188 2 545.317432 1088.62031 0.29242 0.00015946 -0.89245 -0.00048667 -0.60004 -0.00032721 545.3167581332776 78.179 1.5341 78.231 77.323 78.857 0.052452 95 63 2 0 0 0 0.80676 1 43274 43274 2.5775 0 1 5672300 80866 8597 54187 55319 94031 94031 0.07954478414171717 YTPTLVVTR 9 Unmodified _YTPTLVVTR_ 0 0 0 REV__nc|ENSG00000003393|Q96Q42-3|ALS2 REV__nc|ENSG00000003393|Q96Q42-3|ALS2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 525.280517578125 2 525.303124 1048.5917 1.9601 0.0010296 -0.17641 -9.2669E-05 1.7837 0.00093697 525.3029339685572 62.83 0.25413 56.655 56.526 56.78 -6.1757 15 12 2 0 0 0 0.18882 1 40626 40626 15.847 0 1 4608100 + 80867 16937 54188 55320 94032 94032 0.06934315994362805 YTPVEMYSSC 10 Unmodified _YTPVEMYSSC_ 0 0 0 REV__ENSG00000162511|ENST00000294507|LAPTM5 REV__ENSG00000162511|ENST00000294507|LAPTM5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.2393188476562 2 590.238475 1178.4624 0.057154 3.3734E-05 -0.63769 -0.00037639 -0.58054 -0.00034265 590.238581516102 47.055 0.34712 47.055 46.922 47.269 0 52 16 4 0 0 0 0.62068 1 25728 25728 10.074 0 1 22797000 + 80868 21653 54189 55321 94033 94033 -0.1196956974222303 YTPYIPMTR 9 Unmodified _YTPYIPMTR_ 0 0 0 REV__ENSG00000124201|ENST00000396105|ZNFX1 REV__ENSG00000124201|ENST00000396105|ZNFX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.2905883789062 2 571.289159 1140.56377 0.46831 0.00026754 1.599 0.00091351 2.0673 0.001181 571.2902526253175 52.817 0.63346 52.753 52.482 53.115 -0.063423 52 31 2 0 0 0 0.34999 1 28666 28666 14.838 0 1 1843900 + 80869 19427 54190 55322 94034 94034 -0.0008933025735586853 YTQCLYPFR 9 Unmodified _YTQCLYPFR_ 0 0 0 REV__ENSG00000164363|ENST00000324642|SLC6A18 REV__ENSG00000164363|ENST00000324642|SLC6A18 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 595.7848510742188 2 595.786784 1189.55902 NaN NaN NaN NaN NaN NaN NaN 40.862 1 40.86 40.36 41.36 -0.0017929 0 0 0 0.6306 1 21807 21807 11.64 3.7301 1 + 80870 21913 54191 55323 94035 94035 -0.02818214400144825 YTQEDYTML 9 Unmodified _YTQEDYTML_ 0 0 0 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2;ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0-4|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3;nc|ENSG00000179915|Q9ULB1|NRXN1;nc|ENSG00000179915|Q9ULB1-2|NRXN1;ENSG00000179915|ENST00000401669|NRXN1;nc|ENSG00000179915|Q9ULB1-3|NRXN1 nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000179915|Q9ULB1|NRXN1 nc|ENSG00000179915|Q9ULB1|NRXN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 582.2503051757812 2 582.249897 1162.48524 0.69982 0.00040747 -0.38591 -0.00022469 0.31391 0.00018277 582.2495891199274 75.34 0.42827 74.863 74.676 75.104 -0.47714 49 23 3 0 0 0 0.5029 1 41186 41186 7.2892 0 1 4321500 80871 527;8867;2700 54192 55324 94036 94036 -0.08950227353125229 YTQFEVFF 8 Unmodified _YTQFEVFF_ 0 0 0 REV__ENSG00000152779|ENST00000371790|SLC16A12 REV__ENSG00000152779|ENST00000371790|SLC16A12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7559204101562 2 540.755475 1079.4964 0.34953 0.00018901 1.6301 0.00088149 1.9796 0.0010705 540.7559281137421 83.882 0.58872 83.383 82.983 83.572 -0.49961 38 24 2 0 0 0 0.80383 1 45957 45957 4.3292 1.44 1 491070 + 80872 21135 54193 55325 94037 94037 -0.04017037196649653 YTQFMDRF 8 Unmodified _YTQFMDRF_ 0 0 0 ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51669772-51697433:+|nuORF ENSG00000164080|ENST00000684192|RAD54L2 ENSG00000164080|ENST00000684192|RAD54L2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 553.8235473632812 2 554.250034 1106.48552 1.3587 0.00075306 2.3292 0.001291 3.6879 0.002044 554.2512288411134 90.639 0.28535 84.464 84.307 84.593 -6.1757 18 16 2 0 0 0 8.7369 1 59893 59893 14.582 4.3983 1 8736500 80873 7134 54194 55326 94038 94038 -0.06346762842599674 YTQIIQQYI 9 Unmodified _YTQIIQQYI_ 0 0 0 REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 REV__nc|ENSG00000146918|Q86XI2-2|NCAPG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 585.3178100585938 2 585.313689 1168.61282 1.308 0.00076561 1.8415 0.0010779 3.1496 0.0018435 585.3149491115803 63.982 0.43829 57.806 57.615 58.053 -6.1757 49 23 3 0 0 0 0.018061 1 41338 41338 81.89 29.622 1 34267000 + 80874 20854 54195 55327 94039 94039 0.03526281303243195 YTQKSLSLSPG 11 Unmodified _YTQKSLSLSPG_ 0 0 0 nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211896|P01857-1|IGHG1 nc|ENSG00000211893|P01859-1|IGHG2 nc|ENSG00000211893|P01859-1|IGHG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.314697265625 2 590.814053 1179.61355 -0.26305 -0.00015541 -0.58879 -0.00034787 -0.85184 -0.00050328 590.8136551098812 34.578 0.20672 34.387 34.271 34.477 -0.19131 15 9 2 0 0 0 0.0008837 1 18070 18070 84.522 56.028 1 4068900 80875 16536 54196 55328 94040 94040 0.030930759523016604 YTQPYFFPL 9 Unmodified _YTQPYFFPL_ 0 0 0 REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF REV__ENST00000209875.8_1_12:54634211-54634445:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.2916870117188 2 588.292225 1174.5699 -0.12376 -7.2804E-05 -3.4922 -0.0020545 -3.616 -0.0021273 588.2900734537749 56.446 0.20375 56.446 56.361 56.564 0 12 8 2 0 0 0 0.49272 1 31429 31429 7.9102 0.62092 1 917740 + 80876 24728 54197 55329 94041 94041 -0.01040488754188118 YTQRPKTM 8 Oxidation (M) _YTQRPKTM(Oxidation (M))_ YTQRPKTM(1) YTQRPKTM(50) 0 0 1 REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 520.7628784179688 2 520.763309 1039.51206 NaN NaN NaN NaN NaN NaN NaN 19.368 1 16.712 16.212 17.212 -2.6564 0 0 0 0.42933 1 10252 10252 49.933 9.9833 1 + 80877 27400 54198 55330 94042 94042 1860 -0.006110739512450891 YTQRPKTM 8 Oxidation (M) _YTQRPKTM(Oxidation (M))_ YTQRPKTM(1) YTQRPKTM(50) 0 0 1 REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 520.7628784179688 2 520.763309 1039.51206 1.1275 0.00058714 -0.96857 -0.0005044 0.15888 8.274E-05 520.7628757865408 19.513 0.35548 16.857 16.66 17.016 -2.6564 46 32 2 0 0 0 8.7369 1 10252 10252 49.933 9.9833 1 10028000 + 80878 27400 54198 55330 94043 94043 1860 -0.006110739512450891 YTQSTMQTY 9 Unmodified _YTQSTMQTY_ 0 0 0 nc|ENSG00000180098|Q9NX07-2|TRNAU1AP;ENST00000491577.5_1_1:28887839-28904145:+|nuORF;ENST00000484775.1_1_1:28887181-28904036:+|nuORF;ENSG00000180098|ENST00000373830|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP nc|ENSG00000180098|Q9NX07-2|TRNAU1AP MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.7416381835938 2 561.742239 1121.46993 1.4151 0.00079492 -0.83365 -0.0004683 0.58144 0.00032662 561.7421016498344 37.25 0.74857 32.966 32.557 33.306 -4.2835 141 45 4 0 0 0 0.25681 1 21640 21640 19.257 5.3509 1 113700000 80879 8882 54199 55331 94044 94044 -0.08595094150268778 YTQSYIYYF 9 Unmodified _YTQSYIYYF_ 0 0 0 REV__ENSG00000121858|ENST00000241261|TNFSF10 REV__ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 624.284423828125 2 624.284597 1246.55464 0.91699 0.00057246 0.80895 0.00050502 1.7259 0.0010775 624.2847911458935 71.641 0.21335 71.68 71.535 71.748 0.039024 16 9 2 0 0 0 0.32235 1 39441 39441 23.148 10.908 1 2507800 + 80880 19315 54200 55332 94045 94045 -0.058774003420467125 YTQSYIYYF 9 Unmodified _YTQSYIYYF_ 0 0 0 REV__ENSG00000121858|ENST00000241261|TNFSF10 REV__ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.7831420898438 2 624.284597 1246.55464 0.99363 0.00062031 -1.986 -0.0012398 -0.99237 -0.00061952 624.7842035061562 79.828 0.35793 73.652 73.404 73.762 -6.1757 57 21 3 0 0 0 0.078314 1 52398 52398 42.095 17.421 1 29710000 + 80881 19315 54200 55332 94046 94046 -0.058774003420467125 YTQSYIYYF 9 Unmodified _YTQSYIYYF_ 0 0 0 REV__ENSG00000121858|ENST00000241261|TNFSF10 REV__ENSG00000121858|ENST00000241261|TNFSF10 MSMS AL20221201_MKP_PDAC_01 4 416.5257873535156 3 416.52549 1246.55464 NaN NaN NaN NaN NaN NaN NaN 92.279 1 86.103 85.603 86.603 -6.1757 0 0 0 0.71962 1 61020 61020 8.7454 5.6731 1 + 80882 19315 54200 55332 94047 94047 -0.058774003420467125 YTQSYIYYF 9 Unmodified _YTQSYIYYF_ 0 0 0 REV__ENSG00000121858|ENST00000241261|TNFSF10 REV__ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 624.284597 1246.55464 0.91699 0.00057246 0.80895 0.00050502 1.7259 0.0010775 624.2847911458935 71.641 0.21335 71.68 71.535 71.748 0.039024 0 0 NaN 23.148 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 2507800 + 80883 19315 54200 55332 -0.058774003420467125 YTQTLGEQR 9 Unmodified _YTQTLGEQR_ 0 0 0 REV__ENSG00000163874|ENST00000373087|ZC3H12A REV__ENSG00000163874|ENST00000373087|ZC3H12A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 548.805908203125 2 548.275095 1094.53564 0.9127 0.00050041 -2.4144 -0.0013238 -1.5017 -0.00082336 548.2729274533436 90.061 0.62127 83.885 83.47 84.091 -6.1757 49 34 2 0 0 0 0.14225 1 59397 59397 30.637 4.2953 1 7684500 + 80884 21828 54201 55333 94048 94048 -0.00784936913078127 YTQVKCQLL 9 Unmodified _YTQVKCQLL_ 0 0 0 REV__ENST00000510722.1_1_5:52363040-52363070:+|nuORF REV__ENST00000510722.1_1_5:52363040-52363070:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 365.86669921875 3 365.867082 1094.57942 0.80757 0.00029546 -1.4859 -0.00054366 -0.67837 -0.00024819 365.8663846795471 16.439 0.029713 13.882 13.868 13.897 -2.557 5 3 2 0 0 0 0.32871 1 8518 8518 10.8 0 1 3320400 + 80885 28150 54202 55334 94049 94049 0.03590956259699851 YTQVVTIME 9 Unmodified _YTQVVTIME_ 0 0 0 REV__ENSG00000124721|ENST00000327475|DNAH8 REV__ENSG00000124721|ENST00000327475|DNAH8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.27294921875 2 542.273175 1082.5318 0.91635 0.00049691 1.6351 0.0008867 2.5515 0.0013836 542.7772987758319 100 0.11813 93.825 93.78 93.898 -6.1757 10 7 2 0 0 0 0.21643 1 66734 66734 21.537 4.4504 1 12327000 + 80886 19463 54203 55335 94050 94050 -0.006167427311538631 YTQYQPRVL 9 Unmodified _YTQYQPRVL_ 0 0 0 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 ENSG00000169962|ENST00000339381|TAS1R3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 584.311279296875 2 584.31148 1166.60841 NaN NaN NaN NaN NaN NaN NaN 100.19 1 100.16 99.657 100.66 -0.036301 0 0 0 0.82396 1 55653 55653 4.756 0 1 80887 7932 54204 55336 94051 94051 0.031768168803409935 YTQYVDPIPV 10 Unmodified _YTQYVDPIPV_ 0 0 0 REV__ENST00000510871.5_1_4:40427923-40438677:-|nuORF REV__ENST00000510871.5_1_4:40427923-40438677:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.8067626953125 2 597.805697 1193.59684 -0.024039 -1.4371E-05 0.52436 0.00031346 0.50032 0.00029909 597.8056534782497 65.659 0.34621 65.659 65.447 65.793 0 36 14 4 0 0 0 0.16361 1 36574 36574 38.176 2.0485 1 4878200 + 80888 21802 54205 55337 94052 94052 0.007785750663060753 YTREGLYF 8 Unmodified _YTREGLYF_ 0 0 0 REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF;REV__ENST00000467010.2_1_8:92169765-92170749:+|nuORF REV__ENST00000490639.5_1_3:148895590-148939579:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7584838867188 2 524.758549 1047.50255 0.089597 4.7017E-05 0.96011 0.00050382 1.0497 0.00055084 524.7591946010773 66.522 0.35149 66.039 65.902 66.254 -0.48323 28 16 3 0 0 0 0.80232 1 36407 36407 5.2307 0 1 1551200 + 80889 17227;27422 54206 55338 94053 94053 -0.019305189651277033 YTRFQKLE 8 Unmodified _YTRFQKLE_ 0 0 0 ENSG00000163617|ENST00000295878|CCDC191;nc|ENSG00000163617|Q8NCU4-2|CCDC191;ENST00000460813.5_1_3:113723412-113755878:-|nuORF ENSG00000163617|ENST00000295878|CCDC191 ENSG00000163617|ENST00000295878|CCDC191 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.5538635253906 3 362.197708 1083.57129 1.2803 0.00046372 0.81938 0.00029678 2.0997 0.0007605 362.19784970020663 50.326 0.26648 50.277 50.127 50.393 -0.048828 20 12 2 0 0 0 8.7369 1 27189 27189 3.9444 0 1 648290 80890 7029 54207 55339 94054 94054 0.03285145334598383 YTRHGYIF 8 Unmodified _YTRHGYIF_ 0 0 0 ENST00000474309.1_1_10:99204625-99205587:-|nuORF;ENST00000489158.1_1_10:99205437-99205742:-|nuORF;ENST00000476234.5_1_10:99200926-99205742:-|nuORF;ENST00000472345.5_1_10:99197505-99205641:-|nuORF;ENSG00000171311|ENST00000370902|EXOSC1 ENST00000474309.1_1_10:99204625-99205587:-|nuORF ENST00000474309.1_1_10:99204625-99205587:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 352.8459777832031 3 352.846898 1055.51886 -0.52633 -0.00018571 -1.0666 -0.00037636 -1.593 -0.00056207 352.84638649860716 29.793 0.24853 29.793 29.682 29.931 0 26 14 2 0 0 0 0.6895 1 15437 15437 19.257 8.4331 1 7554400 80891 8089 54208 55340 94055 94055 -0.006673930083934465 YTRKWRRR 8 Unmodified _YTRKWRRR_ 0 0 0 ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.357421875 2 611.357422 1220.70029 -0.0055041 -3.365E-06 -1.105 -0.00067558 -1.1106 -0.00067894 611.3567119501977 85.427 0.48612 85.489 85.162 85.648 0.061646 23 18 2 0 0 0 0.80558 1 47294 47294 4.756 1.7608 1 9699300 80892 11621 54209 55341 94056 94056 0.09876964808017874 YTRKWRRRRRR 11 Unmodified _YTRKWRRRRRR_ 0 0 0 ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF ENST00000306085.10_3_7:100730337-100730388:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 845.5079956054688 2 845.509089 1689.00362 NaN NaN NaN NaN NaN NaN NaN 23.303 1 23.32 22.82 23.82 0.01749 0 0 0 0.9435 1 11999 11999 0 0 1 80893 11621 54210 55342 94057 94057 0.18668319916105247 YTRLRTIP 8 Unmodified _YTRLRTIP_ 0 0 0 REV__ENSG00000149311|ENST00000675843|ATM REV__ENSG00000149311|ENST00000675843|ATM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 510.3036804199219 2 510.303458 1018.59236 -0.3333 -0.00017008 0.50431 0.00025735 0.17101 8.7266E-05 510.30370120242884 103.48 0.13609 103.44 103.38 103.52 -0.04792 15 5 5 0 0 0 0.81107 1 57476 57476 0 0 1 14437000 + 80894 20993 54211 55343 94058 94058 0.08381155434108223 YTRLSSSWL 9 Unmodified _YTRLSSSWL_ 0 0 0 REV__ENST00000522111.2_2_1:27320200-27320401:+|nuORF REV__ENST00000522111.2_2_1:27320200-27320401:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.7860717773438 2 556.790381 1111.56621 0.82504 0.00045937 -3.7835 -0.0021066 -2.9585 -0.0016473 556.7859980933656 73.604 0.40179 73.604 73.454 73.856 0 38 17 3 0 0 0 0.49272 1 40974 40974 7.9102 1.187 1 680950 + 80895 28295 54212 55344 94059 94059 0.01488841471973501 YTRMVEEMI 9 Unmodified _YTRMVEEMI_ 0 0 0 REV__nc|ENSG00000136603|P12757-3|SKIL REV__nc|ENSG00000136603|P12757-3|SKIL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.2787475585938 2 586.277934 1170.54132 0.22372 0.00013116 -1.0811 -0.00063385 -0.85742 -0.00050269 586.2778619216537 58.218 0.21297 58.218 58.103 58.316 0 18 7 3 0 0 0 0.49272 1 32445 32445 7.9102 3.1541 1 886220 + 80896 20170 54213 55345 94060 94060 -0.03713297717285968 YTRMVEEMI 9 Unmodified _YTRMVEEMI_ 0 0 0 REV__nc|ENSG00000136603|P12757-3|SKIL REV__nc|ENSG00000136603|P12757-3|SKIL MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 586.277934 1170.54132 0.22372 0.00013116 -1.0811 -0.00063385 -0.85742 -0.00050269 586.2778619216537 58.218 0.21297 58.218 58.103 58.316 0 0 0 NaN 7.9102 18 7 3 NaN NaN NaN NaN 0 NaN NaN 0 886220 + 80897 20170 54213 55345 -0.03713297717285968 YTRQVVDCQL 10 Unmodified _YTRQVVDCQL_ 0 0 0 nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3;ENST00000503467.1_1_4:17587853-17609209:+|nuORF nc|ENSG00000002549|P28838-2|LAP3 nc|ENSG00000002549|P28838-2|LAP3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 613.3317260742188 2 612.805705 1223.59686 0.98715 0.00060493 -1.0539 -0.00064584 -0.066767 -4.0915E-05 612.8052117031094 87.15 0.21327 80.974 80.843 81.056 -6.1757 16 11 2 0 0 0 0.21783 1 57425 57425 18.146 0 1 14566000 80898 261 54214 55346 94061 94061 -0.005997482053089698 YTRRSFQI 8 Unmodified _YTRRSFQI_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 535.7916259765625 2 535.790715 1069.56688 0.27634 0.00014806 0.38744 0.00020758 0.66378 0.00035565 535.7909385766749 92.039 0.35781 92.039 91.834 92.192 0 49 22 3 0 0 0 0.70294 1 50865 50865 16.942 1.0951 1 1505100 + 80899 20682 54215 55347 94062 94062 0.03487680911666757 YTRRSFQI 8 Unmodified _YTRRSFQI_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7908325195312 2 535.790715 1069.56688 0.34676 0.00018579 0.28763 0.00015411 0.63439 0.0003399 535.7907782382003 92.519 0.55969 92.038 91.813 92.373 -0.48092 58 25 3 0 0 0 0.63229 2 50610 50514;50610 23.148 1.4018 1 6071900 + 80900 20682 54215 55347 94063;94064 94064 0.03487680911666757 YTRRSFQI 8 Unmodified _YTRRSFQI_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.790715 1069.56688 0.27634 0.00014806 0.38744 0.00020758 0.66378 0.00035565 535.7909385766749 92.039 0.35781 92.039 91.834 92.192 0 0.00035407 5.091E-05 NaN 23.148 49 22 3 NaN NaN NaN NaN 0 NaN NaN 0 1505100 + 80901 20682 54215 55347 0.03487680911666757 YTRRSFQI 8 Unmodified _YTRRSFQI_ 0 0 0 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 REV__nc|ENSG00000143921|Q9H221-2|ABCG8 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 535.790715 1069.56688 0.34676 0.00018579 0.28763 0.00015411 0.63439 0.0003399 535.7907782382003 92.519 0.55969 92.038 91.813 92.373 -0.48092 -0.00035407 -5.6041E-05 NaN 23.148 58 25 3 NaN NaN NaN NaN 0 NaN NaN 0 6071900 + 80902 20682 54215 55347 0.03487680911666757 YTSGPGSRIS 10 Unmodified _YTSGPGSRIS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 512.7574462890625 2 512.756538 1023.49852 NaN NaN NaN NaN NaN NaN NaN 18.625 1 18.625 18.125 19.125 0 0 0 0 0.78689 1 9272 9272 12.873 4.1272 1 + 80903 165 54216 55348 94065 94065 -0.012286084588367885 YTSGPGSRISS 11 Unmodified _YTSGPGSRISS_ 0 0 0 CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENSG00000170421|ENST00000692008|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF CON__P05787 CON__P05787 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.2725219726562 2 556.272552 1110.53055 -0.12139 -6.7524E-05 0.019229 1.0697E-05 -0.10216 -5.6827E-05 556.2726715246657 18.864 0.19621 18.864 18.75 18.947 0 21 16 2 0 0 0 0.35659 1 9389 9389 23.801 5.6547 1 651510 + 80904 165 54217 55349 94066 94066 -0.02029240775686958 YTSGTISFENL 11 Unmodified _YTSGTISFENL_ 0 0 0 REV__ENSG00000196296|ENST00000395503|ATP2A1 REV__ENSG00000196296|ENST00000395503|ATP2A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 411.1992492675781 3 411.199554 1230.57683 -0.55701 -0.00022904 0.62861 0.00025849 0.071607 2.9445E-05 411.19947211292595 25.998 0.22511 25.998 25.862 26.087 0 18 10 3 0 0 0 0.68427 1 13344 13344 2.6312 0.72486 1 1887900 + 80905 23813 54218 55350 94067 94067 -0.029232206642518577 YTSHLYSGNY 10 Unmodified _YTSHLYSGNY_ 0 0 0 REV__ENSG00000182263|ENST00000333129|FIGN REV__ENSG00000182263|ENST00000333129|FIGN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 602.7625732421875 2 602.767103 1203.51965 -0.16679 -0.00010053 -4.0006 -0.0024114 -4.1674 -0.002512 602.7652456032588 40.1 0.32446 40.1 39.932 40.257 0 22 15 2 0 0 0 0.66652 1 21499 21499 3.9444 0 1 2567900 + 80906 23258 54219 55351 94068 94068 -0.0739664314996844 YTSKIRRL 8 Unmodified _YTSKIRRL_ 0 0 0 nc|ENSG00000101040|Q9ULU4-22|ZMYND8 nc|ENSG00000101040|Q9ULU4-22|ZMYND8 nc|ENSG00000101040|Q9ULU4-22|ZMYND8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 518.8167114257812 2 518.816733 1035.61891 -0.58027 -0.00030105 0.33918 0.00017597 -0.24109 -0.00012508 518.8168306806227 103.47 0.06694 103.42 103.38 103.45 -0.04792 8 2 4 0 0 0 0.81107 1 57474 57474 0 0 1 15266000 80907 16088 54220 55352 94069 94069 0.10252844325441401 YTSLTYKVD 9 Unmodified _YTSLTYKVD_ 0 0 0 ENSG00000169876|ENST00000306151|MUC17;nc|ENSG00000169876|Q685J3-2|MUC17;MUC17|p.P1691Lfs*2|1|0.16|ENSG00000169876|chr7:101036486-101036486|T/-|frameshift_variant ENSG00000169876|ENST00000306151|MUC17 ENSG00000169876|ENST00000306151|MUC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 545.277099609375 2 545.276772 1088.53899 -0.42566 -0.0002321 0.34508 0.00018816 -0.080584 -4.394E-05 545.2767701935164 44.582 0.11905 44.266 44.189 44.308 -0.31585 7 5 2 0 0 0 0.28023 1 23811 23811 18.146 0 1 7091900 80908 7922 54221 55353 94070 94070 -0.0017368685910241766 YTSLVPFPPL 10 Unmodified _YTSLVPFPPL_ 0 0 0 REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1 REV__nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 567.26171875 2 567.3157 1132.61685 0.71251 0.00040422 -3.5441 -0.0020106 -2.8315 -0.0016064 567.3136824881309 71.853 0.23179 71.377 71.293 71.525 -0.47609 21 8 3 0 0 0 0.23227 1 39323 39323 10.824 2.9138 1 2168500 + 80909 24043 54222 55354 94071 94071 0.055843707969415846 YTSPPQLYV 9 Unmodified _YTSPPQLYV_ 0 0 0 REV__ENSG00000171496|ENST00000641027|OR1L8 REV__ENSG00000171496|ENST00000641027|OR1L8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 534.7763671875 2 534.274032 1066.53351 0.53998 0.0002885 0.74513 0.0003981 1.2851 0.0006866 534.2739091893926 62.163 0.63931 55.987 55.723 56.362 -6.1757 76 35 3 0 0 0 0.30562 1 40174 40174 16.942 1.0951 1 48762000 + 80910 22568 54223 55355 94072 94072 0.0029063434908493946 YTSPVNPAV 9 Unmodified _YTSPVNPAV_ 0 0 0 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 474.2443237304688 2 474.245275 946.475997 -0.23364 -0.0001108 0.25903 0.00012284 0.025391 1.2041E-05 474.24563614555154 41.65 0.19246 41.65 41.538 41.731 0 17 9 3 0 0 0 0.026094 1 22476 22476 57.471 27.247 1 4705000 80911 4644 54224 55356 94073 94073 0.0006179214352641793 YTSPVNPAV 9 Unmodified _YTSPVNPAV_ 0 0 0 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 ENSG00000134825|ENST00000537328|TMEM258 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 947.48583984375 1 947.483273 946.475997 -0.84425 -0.00079992 0.19725 0.00018689 -0.64701 -0.00061303 947.4833522816023 41.649 0.17445 41.649 41.556 41.731 0 13 8 2 0 0 0 0.0087873 1 22494 22494 103.35 44.675 1 2592500 80912 4644 54224 55356 94074 94074 0.0006179214352641793 YTSRRGRCEA 10 Unmodified _YTSRRGRCEA_ 0 0 0 REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.7889404296875 2 599.790921 1197.56729 NaN NaN NaN NaN NaN NaN NaN 18.692 1 18.692 18.192 19.192 0 0 0 0 0.97855 1 9311 9311 2.9952 0.69251 1 + 80913 19502 54225 55357 94075 94075 -0.02359267430779255 YTSSVNRL 8 Unmodified _YTSSVNRL_ 0 0 0 ENSG00000184432|ENST00000333188|COPB2;nc|ENSG00000184432|P35606-2|COPB2 ENSG00000184432|ENST00000333188|COPB2 ENSG00000184432|ENST00000333188|COPB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 939.48828125 1 939.489421 938.482145 0.33773 0.0003173 0.048101 4.519E-05 0.38583 0.00036249 939.4892158491817 38.887 0.25153 34.437 34.348 34.599 -4.4509 24 15 2 0 0 0 1.8231E-20 1 22992 22992 205.38 151.81 1 6747600 80914 9257 54226 55358 94076 94076 0.01044310375061741 YTSTTQTPR 9 Unmodified _YTSTTQTPR_ 0 0 0 ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B ENSG00000099814|ENST00000414716|CEP170B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2643432617188 2 527.76182 1053.50909 1.1415 0.00060243 2.0007 0.0010559 3.1422 0.0016583 527.7630314390568 42.826 0.38029 42.826 42.586 42.966 0 56 19 4 0 0 0 0.34999 1 23287 23287 14.838 0.93222 1 25906000 80915 1711 54227 55359 94077 94077 -0.015526258044474162 YTSVECPL 8 Carbamidomethyl (C) _YTSVEC(Carbamidomethyl (C))PL_ YTSVEC(1)PL YTSVEC(71)PL 0 1 0 REV__ENST00000552478.5_1_12:56332981-56334773:+|nuORF REV__ENST00000552478.5_1_12:56332981-56334773:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 484.7225341796875 2 484.723318 967.432083 NaN NaN NaN NaN NaN NaN NaN 79.467 1 73.292 72.792 73.792 -6.1757 0 0 0 0.25888 1 52076 52076 70.716 17.14 1 + 80916 17375 54228 55360 94078 94078 1033 -0.052935603451032875 YTSYPMHDFY 10 Unmodified _YTSYPMHDFY_ 0 0 0 nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 441.8496704101562 3 441.849868 1322.52777 -0.18998 -8.3942E-05 -0.39205 -0.00017323 -0.58202 -0.00025717 441.84976648224983 55.285 0.33798 55.285 55.029 55.367 0 22 14 2 0 0 0 0.71123 1 30659 30659 0.69767 0 1 1665800 80917 5014 54229 55361 94079 94079 -0.12058832224875005 YTTDGRDIDE 10 Unmodified _YTTDGRDIDE_ 0 0 0 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 ENSG00000138829|ENST00000262464|FBN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.5069274902344 3 395.507047 1183.49931 -0.50321 -0.00019902 -0.18149 -7.178E-05 -0.6847 -0.0002708 395.8410881630771 29.633 0.15483 29.633 29.567 29.722 0 15 9 2 0 0 0 0.66569 1 15366 15366 3.5871 0 1 1521400 80918 5115 54230 55362 94080 94080 -0.08509858600473308 YTTDRVMTV 9 Unmodified _YTTDRVMTV_ 0 0 0 ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;nc|ENSG00000196591|Q92769-3|HDAC2;ENSG00000196591|ENST00000519065|HDAC2 ENSG00000116478|ENST00000373548|HDAC1;nc|ENSG00000196591|Q92769-3|HDAC2 nc|ENSG00000196591|Q92769-3|HDAC2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 542.7357177734375 2 543.268424 1084.5223 0.44373 0.00024107 0.57914 0.00031463 1.0229 0.0005557 543.2687629598853 40.443 0.28899 35.913 35.824 36.113 -4.5294 25 17 2 0 0 0 0.079792 1 24201 24201 34.222 14.965 1 8335100 80919 9847;3221 54231 55363 94081 94081 -0.016585110166943196 YTTILANFKL 10 Unmodified _YTTILANFKL_ 0 0 0 REV__nc|ENSG00000173575|O14647-2|CHD2 REV__nc|ENSG00000173575|O14647-2|CHD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.3397827148438 2 592.339707 1182.66486 0.39741 0.0002354 -0.43599 -0.00025826 -0.038581 -2.2853E-05 592.3390117110611 63.229 0.21877 62.742 62.622 62.841 -0.48617 16 9 2 0 0 0 0.62068 1 34512 34512 10.074 0 1 657620 + 80920 22739 54232 55364 94082 94082 0.08083444716999111 YTTILANFKL 10 Unmodified _YTTILANFKL_ 0 0 0 REV__nc|ENSG00000173575|O14647-2|CHD2 REV__nc|ENSG00000173575|O14647-2|CHD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 592.339707 1182.66486 0.17281 0.00010236 -0.40792 -0.00024163 -0.23511 -0.00013926 592.8412058268219 62.814 0.2486 62.793 62.678 62.927 -0.021614 0.025187 6.2604E-06 NaN 10.074 24 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3461000 + 80921 22739 54232 55364 0.08083444716999111 YTTLDGMN 8 Unmodified _YTTLDGMN_ 0 0 0 REV__nc|ENSG00000153291|O95847-2|SLC25A27 REV__nc|ENSG00000153291|O95847-2|SLC25A27 MULTI-MSMS AL20221201_MKP_PDAC_01 4 458.2033386230469 2 457.699843 913.385133 1.1351 0.00051953 2.1138 0.0009675 3.2489 0.001487 457.69994565024285 55.015 0.25111 49.094 48.956 49.208 -5.9211 20 15 2 0 0 0 0.76266 1 34981 34981 11.64 0 1 11302000 + 80922 21166 54233 55365 94083 94083 -0.07502419896252377 YTTLLINF 8 Unmodified _YTTLLINF_ 0 0 0 REV__ENSG00000153922|ENST00000614616|CHD1 REV__ENSG00000153922|ENST00000614616|CHD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.774658203125 2 492.773668 983.532783 0.55288 0.00027245 0.35986 0.00017733 0.91275 0.00044978 492.77343802741814 67.142 0.58355 66.66 66.356 66.939 -0.48219 95 26 6 0 0 0 0.6895 1 36793 36793 18.135 2.2878 1 11326000 + 80923 21196 54234 55366 94084 94084 0.04035839700043198 YTTNFGEKL 9 Unmodified _YTTNFGEKL_ 0 0 0 ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 ENSG00000188738|ENST00000424728|FSIP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 536.770263671875 2 536.769114 1071.52368 0.6596 0.00035405 0.30711 0.00016485 0.96671 0.0005189 536.7698113351086 63.204 0.36942 57.029 56.857 57.226 -6.1757 38 20 2 0 0 0 0.30562 1 40948 40948 16.942 0 1 26845000 80924 9690 54235 55367 94085 94085 -0.00922553656278069 YTTSKSMI 8 Unmodified _YTTSKSMI_ 0 0 0 REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7349243164062 2 465.733686 929.452819 NaN NaN NaN NaN NaN NaN NaN 70.42 1 69.941 69.441 70.441 -0.47903 0 0 0 0.97444 1 38514 38514 4.3292 1.44 1 + 80925 17723 54236 55368 94086 94086 -0.014729699654594697 YTTTRSHL 8 Unmodified _YTTTRSHL_ 0 0 0 ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L ENSG00000049656|ENST00000320895|CLPTM1L MSMS AL20221201_MKP_PDAC_01 4 489.7555847167969 2 489.753798 977.493044 NaN NaN NaN NaN NaN NaN NaN 20.459 1 17.767 17.267 18.267 -2.693 0 0 0 0.12251 1 10901 10901 92.653 41.798 1 80926 713 54237 55369 94087 94087 0.0033971274932582674 YTTWRSSL 8 Unmodified _YTTWRSSL_ 0 0 0 ENST00000241274.3_1_3:164908634-164914629:-|nuORF ENST00000241274.3_1_3:164908634-164914629:-|nuORF ENST00000241274.3_1_3:164908634-164914629:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.2568054199219 2 507.256174 1012.49779 NaN NaN NaN NaN NaN NaN NaN 44.72 1 44.72 44.22 45.22 0 0 0 0 0.93066 1 24346 24346 14.582 4.3983 1 80927 11106 54238 55370 94088 94088 -0.007954031079066226 YTVFRICTS 9 Unmodified _YTVFRICTS_ 0 0 0 REV__ENSG00000188886|ENST00000342380|ASTL REV__ENSG00000188886|ENST00000342380|ASTL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 545.2740478515625 2 545.273509 1088.53247 0.024562 1.3393E-05 0.42867 0.00023374 0.45323 0.00024714 545.2737633022655 51.151 0.49839 51.097 50.862 51.361 -0.053871 56 24 3 0 0 0 0.14 1 27721 27721 29.082 0.59474 1 37367000 + 80928 23740 54239 55371 94089 94089 -0.008259032914338604 YTVGAPHTW 9 Unmodified _YTVGAPHTW_ 0 0 0 ENSG00000080986|ENST00000261597|NDC80;ENST00000574567.1_1_18:2578953-2579046:+|nuORF ENSG00000080986|ENST00000261597|NDC80 ENSG00000080986|ENST00000261597|NDC80 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 516.271728515625 2 516.250892 1030.48723 0.33626 0.00017359 -2.8434 -0.0014679 -2.5072 -0.0012943 516.2490903981808 45.366 0.22029 40.411 40.284 40.504 -4.9549 21 15 2 0 0 0 0.17275 1 27795 27795 21.747 14.457 1 7715900 80929 1311 54240 55372 94090 94090 -0.026793857623488293 YTVGNFLPSV 10 Unmodified _YTVGNFLPSV_ 0 0 0 REV__ENSG00000241973|ENST00000255882|PI4KA REV__ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 366.1934204101562 3 366.193963 1095.56006 0.80157 0.00029353 0.75877 0.00027786 1.5603 0.00057138 366.19380712764416 14.792 0.13129 12.265 12.221 12.352 -2.5273 58 22 4 0 0 0 0.66229 1 7529 7529 4.1166 0 1 5512200 + 80930 24456 54241 55373 94091 94091 0.016103232404248047 YTVPAVQVGTI 11 Unmodified _YTVPAVQVGTI_ 0 0 0 REV__nc|ENSG00000143552|Q5VU65-2|NUP210L REV__nc|ENSG00000143552|Q5VU65-2|NUP210L MSMS AL20221201_MKP_PDAC_01 4 574.3255004882812 2 574.321514 1146.62847 NaN NaN NaN NaN NaN NaN NaN 98.456 1 92.281 91.781 92.781 -6.1757 0 0 0 0.51453 1 65308 65308 24.021 2.2739 1 + 80931 20652 54242 55374 94092 94092 0.061025678202895506 YTVQIHAY 8 Unmodified _YTVQIHAY_ 0 0 0 REV__ENSG00000147251|ENST00000276202|DOCK11 REV__ENSG00000147251|ENST00000276202|DOCK11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 497.7489013671875 2 497.753267 993.491981 0.38388 0.00019108 -0.59855 -0.00029793 -0.21467 -0.00010685 497.75276378010824 91.155 0.47159 90.66 90.44 90.911 -0.49457 36 21 2 0 0 0 0.80143 1 49761 49761 5.7604 0.52976 1 1020300 + 80932 20877 54243 55375 94093 94093 -0.005025016195759235 YTVSEENYM 9 Unmodified _YTVSEENYM_ 0 0 0 ENSG00000100522|ENST00000216410|GNPNAT1 ENSG00000100522|ENST00000216410|GNPNAT1 ENSG00000100522|ENST00000216410|GNPNAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 568.2363891601562 2 568.234247 1134.45394 0.65947 0.00037474 -0.99311 -0.00056432 -0.33364 -0.00018958 568.2342685015644 60.689 0.27499 60.689 60.536 60.811 0 17 11 2 0 0 0 0.54444 1 33852 33852 4.756 0 1 635950 80933 1839 54244 55376 94094 94094 -0.10790800387212585 YTWENHGF 8 Unmodified _YTWENHGF_ 0 0 0 nc|ENSG00000149212|P58005-4|SESN3;ENSG00000149212|ENST00000536441|SESN3 nc|ENSG00000149212|P58005-4|SESN3 nc|ENSG00000149212|P58005-4|SESN3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.2241821289062 2 527.224874 1052.43519 NaN NaN NaN NaN NaN NaN NaN 79.108 1 79.108 78.608 79.608 0 0 0 0 0.97444 1 43947 43947 0.79363 0 1 80934 5991 54245 55377 94095 94095 -0.08892549176107423 YTWKFFHI 8 Unmodified _YTWKFFHI_ 0 0 0 REV__ENST00000355155.5_2_8:100025513-100050691:+|nuORF REV__ENST00000355155.5_2_8:100025513-100050691:+|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 570.79638671875 2 571.295102 1140.57565 0.65153 0.00037222 -1.5575 -0.00088982 -0.90602 -0.0005176 571.294216263419 65.181 0.3681 59.005 58.868 59.236 -6.1757 26 20 2 0 0 0 8.7369 1 42373 42373 5.7604 0 1 10409000 + 80935 25802 54246 55378 94096 94096 0.010986545481500798 YTWNNFLHF 9 Unmodified _YTWNNFLHF_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.289306640625 2 621.290548 1240.56654 0.31534 0.00019592 -0.48258 -0.00029982 -0.16724 -0.0001039 621.290051240813 86.573 0.3222 86.573 86.379 86.701 0 28 14 3 0 0 0 0.48152 1 47920 47920 8.5933 1.8701 1 835650 80936 1775 54247 55379 94097 94097 -0.044117388081986064 YTWNNFLHF 9 Unmodified _YTWNNFLHF_ 0 0 0 nc|ENSG00000100239|O75170-6|PPP6R2;nc|ENSG00000100239|O75170-2|PPP6R2;nc|ENSG00000100239|O75170-4|PPP6R2;nc|ENSG00000100239|O75170-3|PPP6R2;ENSG00000100239|ENST00000612753|PPP6R2;nc|ENSG00000100239|O75170|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 nc|ENSG00000100239|O75170-6|PPP6R2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7860717773438 2 621.290548 1240.56654 0.62278 0.00038693 -2.3298 -0.0014475 -1.707 -0.0010605 621.2888372058194 64.454 0.51262 63.969 63.696 64.208 -0.48512 40 23 2 0 0 0 0.54444 1 35267 35267 4.756 0 1 3014900 80937 1775 54247 55379 94098 94098 -0.044117388081986064 YTWSFFHF 8 Unmodified _YTWSFFHF_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 378.83935546875 3 378.839632 1133.49707 NaN NaN NaN NaN NaN NaN NaN 26.196 1 26.196 25.696 26.696 0 0 0 0 0.97444 1 13459 13459 1.8442 0.6509 1 80938 15914 54248 55380 94099 94099 -0.06434197756948379 YTWSFFHF 8 Unmodified _YTWSFFHF_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8396606445312 3 378.839632 1133.49707 NaN NaN NaN NaN NaN NaN NaN 28.712 1 28.65 28.15 29.15 -0.062159 0 0 0 0.97444 1 14828 14828 1.8442 0.6509 1 80939 15914 54248 55380 94100 94100 -0.06434197756948379 YTWSFFHF 8 Unmodified _YTWSFFHF_ 0 0 0 HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|70|3|sense MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 378.8402709960938 3 378.839632 1133.49707 NaN NaN NaN NaN NaN NaN NaN 29.931 1 29.851 29.351 30.351 -0.080429 0 0 0 0.97444 1 15519 15519 1.8442 0.6509 1 80940 15914 54248 55380 94101 94101 -0.06434197756948379 YTWYWQHGI 9 Unmodified _YTWYWQHGI_ 0 0 0 REV__ENSG00000198712|ENST00000361739|MT-CO2 REV__ENSG00000198712|ENST00000361739|MT-CO2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.2913208007812 2 627.290548 1252.56654 NaN NaN NaN NaN NaN NaN NaN 96.155 1 95.85 95.35 96.35 -0.30472 0 0 0 0.85798 1 52514 52514 0.52476 0.066424 1 + 80941 24042 54249 55381 94102 94102 -0.04963738808214657 YTYASTRNNL 10 Unmodified _YTYASTRNNL_ 0 0 0 nc|ENSG00000233306|A0A075B6R0|TRGV2 nc|ENSG00000233306|A0A075B6R0|TRGV2 nc|ENSG00000233306|A0A075B6R0|TRGV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.7989501953125 2 601.793652 1201.57275 -0.047785 -2.8757E-05 1.336 0.00080399 1.2882 0.00077524 601.7944261693142 78.269 2.8625 72.094 70.62 73.482 -6.1757 408 166 3 0 0 0 0.44373 1 52148 52148 19.257 2.1441 1 114760000 80942 16559 54250 55382 94103 94103 -0.01997265367322143 YTYCGSCAAH 10 Unmodified _YTYCGSCAAH_ 0 0 0 ENSG00000162959|ENST00000404530|MEMO1;nc|ENSG00000162959|Q9Y316-3|MEMO1;ENST00000490459.5_1_2:32095017-32236086:-|nuORF ENSG00000162959|ENST00000404530|MEMO1 ENSG00000162959|ENST00000404530|MEMO1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 359.136474609375 3 359.137243 1074.3899 -0.27621 -9.9196E-05 -2.6137 -0.00093869 -2.8899 -0.0010379 359.136267216741 41.806 0.31403 41.806 41.626 41.94 0 28 15 2 0 0 0 0.70895 1 22588 22588 1.9064 0 1 4614700 80943 6933 54251 55383 94104 94104 -0.14431859025171434 YTYPNYTY 8 Unmodified _YTYPNYTY_ 0 0 0 REV__ENST00000337227.8_1_20:18469438-18469636:-|nuORF REV__ENST00000337227.8_1_20:18469438-18469636:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.2625122070312 2 542.73474 1083.45493 0.18227 9.8926E-05 0.64616 0.00035069 0.82843 0.00044962 542.7347678131083 55.018 0.18133 55.018 54.92 55.101 0 18 7 3 0 0 0 8.7369 1 30549 30549 10.183 0 1 921220 + 80944 25657 54252 55384 94105 94105 -0.08346217956000146 YTYSGQNM 8 Unmodified _YTYSGQNM_ 0 0 0 ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B ENSG00000167306|ENST00000285039|MYO5B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.1981506347656 2 482.197467 962.380382 0.60897 0.00029364 1.6734 0.0008069 2.2823 0.0011005 482.19834513279244 49.372 0.39311 49.372 49.236 49.629 0 39 17 3 0 0 0 0.80383 1 27131 27131 4.3292 0 1 12392000 80945 7598 54253 55385 94106 94106 -0.10231304039018596 YTYTRFQHYLD 11 Unmodified _YTYTRFQHYLD_ 0 0 0 ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 754.355712890625 2 753.854241 1505.69393 0.75364 0.00056814 -0.00089023 -6.711E-07 0.75275 0.00056747 753.8543361109996 81.93 0.83599 75.755 75.308 76.144 -6.1757 112 46 3 0 0 0 0.61059 1 53768 53768 10.8 1.2555 1 23278000 80946 9450 54254 55386 94107 94107 -0.03869062724675132 YTYVSITGCI 10 Unmodified _YTYVSITGCI_ 0 0 0 NKAIN3|p.V135I|1|0.15|ENSG00000185942|chr8:62747061-62747061|G/A|missense_variant NKAIN3|p.V135I|1|0.15|ENSG00000185942|chr8:62747061-62747061|G/A|missense_variant NKAIN3|p.V135I|1|0.15|ENSG00000185942|chr8:62747061-62747061|G/A|missense_variant MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.2752685546875 2 560.273175 1118.5318 1.9081 0.0010691 1.1822 0.00066237 3.0903 0.0017314 560.2740608356642 62.473 0.38807 56.298 56.156 56.544 -6.1757 29 19 2 0 0 0 0.24625 1 40305 40305 30.637 5.2372 1 17347000 80947 16672 54255 55387 94108 94108 -0.02272742731179278 YVAAIDKALK 10 Unmodified _YVAAIDKALK_ 0 0 0 ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A ENSG00000083097|ENST00000349129|DOP1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.3265380859375 2 546.326599 1090.63865 NaN NaN NaN NaN NaN NaN NaN 103.5 1 103.45 102.95 103.95 -0.047928 0 0 0 1.0061 1 57482 57482 0 0 1 80948 1358 54256 55388 94109 94109 0.0969517554549384 YVAAVREF 8 Unmodified _YVAAVREF_ 0 0 0 ENSG00000115368|ENST00000314761|WDR75;ENST00000436347.5_1_2:190313199-190340140:+|nuORF ENSG00000115368|ENST00000314761|WDR75 ENSG00000115368|ENST00000314761|WDR75 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 477.7558898925781 2 477.75581 953.497067 0.81612 0.0003899 0.74089 0.00035396 1.557 0.00074387 477.75609645030346 73.98 0.18313 73.504 73.43 73.613 -0.47588 12 8 2 0 0 0 0.78849 1 40508 40508 9.3474 2.9933 1 513390 80949 3117 54257 55389 94110 94110 0.018458022430422716 YVACILVTIL 10 Unmodified _YVACILVTIL_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6 REV__nc|ENSG00000174233|O43306-2|ADCY6 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 554.8045654296875 2 554.327753 1106.64095 1.1854 0.00065711 -4.3849 -0.0024307 -3.1995 -0.0017736 554.3251193282549 61.631 0.40838 55.455 55.228 55.637 -6.1757 26 20 2 0 0 0 0.20053 1 39634 39634 28.487 6.7402 1 29652000 + 80950 22777 54258 55390 94111 94111 0.09189887958973486 YVACILVTIL 10 Unmodified _YVACILVTIL_ 0 0 0 REV__nc|ENSG00000174233|O43306-2|ADCY6 REV__nc|ENSG00000174233|O43306-2|ADCY6 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 554.327753 1106.64095 0.10773 5.9718E-05 -8.4523 -0.0046853 -8.3445 -0.0046256 554.3229117350274 55.45 0.15721 55.381 55.258 55.415 -0.068737 -0.0049167 -0.0022922 NaN 21.747 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 2122700 + 80951 22777 54258 55390 0.09189887958973486 YVACYMNYN 9 Unmodified _YVACYMNYN_ 0 0 0 REV__ENST00000464088.5_1_1:117057437-117078603:-|nuORF REV__ENST00000464088.5_1_1:117057437-117078603:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.8223266601562 3 380.821144 1139.4416 NaN NaN NaN NaN NaN NaN NaN 53.204 1 53.204 52.704 53.704 0 0 0 0 0.84369 1 29473 29473 1.1933 0.12188 1 + 80952 27366 54259 55391 94112 94112 -0.12254115331234061 YVAEVPLLF 9 Unmodified _YVAEVPLLF_ 0 0 0 REV__ENSG00000178952|ENST00000313511|TUFM REV__ENSG00000178952|ENST00000313511|TUFM MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.7986450195312 2 525.797143 1049.57973 0.78286 0.00041163 1.1977 0.00062975 1.9806 0.0010414 525.7976238070873 101.67 0.15129 95.493 95.373 95.524 -6.1757 10 7 2 0 0 0 0.12841 1 68245 68245 30.225 0 1 11963000 + 80953 23074 54260 55392 94113 94113 0.056926992511762364 YVAGSVILNI 10 Unmodified _YVAGSVILNI_ 0 0 0 ENSG00000256537|ENST00000622602|SMIM10L1 ENSG00000256537|ENST00000622602|SMIM10L1 ENSG00000256537|ENST00000622602|SMIM10L1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 524.8092041015625 2 524.8055 1047.59645 0.82963 0.0004354 -1.2179 -0.00063916 -0.38827 -0.00020377 524.8058554298898 67.333 0.59183 61.157 60.826 61.418 -6.1757 77 33 3 0 0 0 0.48505 1 43710 43710 17.113 0.1706 1 36370000 80954 10801 54261 55393 94114 94114 0.07455200137110296 YVAIQAVPSL 10 Unmodified _YVAIQAVPSL_ 0 0 0 ENSG00000188219|ENST00000683005|POTEE ENSG00000188219|ENST00000683005|POTEE ENSG00000188219|ENST00000683005|POTEE MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.8053588867188 2 530.8055 1059.59645 0.020587 1.0928E-05 0.82493 0.00043788 0.84552 0.00044881 530.8058663811613 65.693 0.46115 65.209 64.876 65.337 -0.48428 50 20 4 0 0 0 0.27276 1 35754 35754 29.082 7.5446 1 12590000 80955 9641 54262 55394 94115 94115 0.06903200137116983 YVAQHDFTFFK 11 Unmodified _YVAQHDFTFFK_ 0 0 0 REV__CON__Q28065 REV__CON__Q28065 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 701.8416748046875 2 701.843145 1401.67174 0.9254 0.00064949 -0.30372 -0.00021316 0.62169 0.00043633 701.8426728372966 57.995 0.59465 57.929 57.438 58.033 -0.066032 50 29 2 0 0 0 0.69838 1 31491 31491 5.2969 2.3016 1 2703500 + + 80956 16862 54263 55395 94116 94116 -0.013032424024686406 YVARVKKFL 9 Unmodified _YVARVKKFL_ 0 0 0 REV__ENSG00000100395|ENST00000216237|L3MBTL2 REV__ENSG00000100395|ENST00000216237|L3MBTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.239013671875 3 375.237726 1122.69135 -0.088358 -3.3155E-05 1.693 0.0006353 1.6047 0.00060214 375.2385998805997 32.805 0.2562 32.835 32.742 32.998 0.029743 23 11 3 0 0 0 0.58145 1 17250 17250 2.4985 0 1 4355100 + 80957 18060 54264 55396 94117 94117 0.13491178398976444 YVASTKYQKV 10 Unmodified _YVASTKYQKV_ 0 0 0 nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2 nc|ENSG00000066032|P26232-2|CTNNA2 nc|ENSG00000066032|P26232-2|CTNNA2 MSMS AL20221201_MKP_PDAC_01 4 593.8267211914062 2 593.826963 1185.63937 NaN NaN NaN NaN NaN NaN NaN 14.329 1 11.826 11.326 12.326 -2.5029 0 0 0 1.0061 1 7271 7271 0 0 1 80958 924 54265 55397 94118 94118 0.05397970194530899 YVATERPQFW 10 Unmodified _YVATERPQFW_ 0 0 0 REV__ENST00000392352.5_1_12:132569448-132569553:+|nuORF REV__ENST00000392352.5_1_12:132569448-132569553:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.8860778808594 3 432.8839 1295.62987 NaN NaN NaN NaN NaN NaN NaN 27.967 1 27.92 27.42 28.42 -0.046408 0 0 0 0.96756 1 14426 14426 4.1895 2.1035 1 + 80959 26390 54266 55398 94119 94119 -0.006117980909493781 YVATLSLHSL 10 Unmodified _YVATLSLHSL_ 0 0 0 ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000144290|ENST00000446997|SLC4A10;ENSG00000050438|ENST00000453097|SLC4A8;ENST00000461456.5_1_2:162565258-162730321:+|nuORF;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;ENST00000428005.1_1_3:27465485-27525617:-|nuORF;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-6|SLC4A8;nc|ENSG00000050438|Q2Y0W8-8|SLC4A8;ENST00000493021.5_1_2:162567177-162757603:+|nuORF;nc|ENSG00000144290|Q6U841-4|SLC4A10;ENST00000547697.6_1_12:51844670-51855120:+|nuORF;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10 ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000144290|Q6U841-2|SLC4A10 nc|ENSG00000144290|Q6U841-2|SLC4A10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.3095092773438 2 552.308406 1102.60226 0.75443 0.00041668 -0.17546 -9.691E-05 0.57897 0.00031977 552.3080112059818 64.369 0.28073 63.884 63.779 64.059 -0.48512 19 12 2 0 0 0 0.5905 1 35131 35131 11.64 2.2572 1 965800 80960 604;16029;16248 54267 55399 94120 94120 0.055062986488110255 YVATNFTNRLS 11 Unmodified _YVATNFTNRLS_ 0 0 0 REV__nc|ENSG00000204544|Q5SSG8-3|MUC21 REV__nc|ENSG00000204544|Q5SSG8-3|MUC21 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 429.7616271972656 3 429.222693 1284.64625 1.0761 0.00046189 -0.22043 -9.4614E-05 0.85568 0.00036728 429.2229335419466 42.459 0.30388 37.774 37.648 37.952 -4.6846 36 20 2 0 0 0 0.29699 1 25571 25571 10.315 3.2781 1 13900000 + 80961 24181 54268 55400 94121 94121 0.01531283075155443 YVAVGQKRCI 10 Unmodified _YVAVGQKRCI_ 0 0 0 REV__nc|ENSG00000101447|Q9H4H8-2|FAM83D REV__nc|ENSG00000101447|Q9H4H8-2|FAM83D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3184814453125 2 568.815876 1135.6172 0.62907 0.00035782 3.5434 0.0020155 4.1724 0.0023733 568.8190831279825 58.813 0.21421 58.752 58.624 58.839 -0.060719 15 10 2 0 0 0 0.42068 1 32039 32039 20.454 7.9221 1 1347900 + 80962 18176 54269 55401 94122 94122 0.054814672451584556 YVCAFLNSE 9 Unmodified _YVCAFLNSE_ 0 0 0 nc|ENSG00000171790|Q499Z3-2|SLFNL1;nc|ENSG00000171790|Q499Z3-3|SLFNL1;ENSG00000171790|ENST00000302946|SLFNL1 nc|ENSG00000171790|Q499Z3-2|SLFNL1 nc|ENSG00000171790|Q499Z3-2|SLFNL1 MSMS AL20221201_MKP_PDAC_01 4 523.2371826171875 2 523.236593 1044.45863 NaN NaN NaN NaN NaN NaN NaN 72.403 1 66.228 65.728 66.728 -6.1757 0 0 0 0.39043 1 47372 47372 20.454 2.3073 1 80963 8139 54270 55402 94123 94123 -0.061818714537821506 YVCMRRHFL 9 Unmodified _YVCMRRHFL_ 0 0 0 REV__ENST00000374660.5_1_10:37490175-37490238:+|nuORF REV__ENST00000374660.5_1_10:37490175-37490238:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 612.8123168945312 2 612.81007 1223.60559 0.61405 0.00037629 2.0439 0.0012525 2.658 0.0016288 612.8112037932981 57.344 0.1795 57.344 57.239 57.419 0 9 7 2 0 0 0 0.54444 1 31930 31930 4.756 0.42677 1 609170 + 80964 26185 54271 55403 94124 94124 0.0027294695016735204 YVCPEKRF 8 Unmodified _YVCPEKRF_ 0 0 0 ENST00000263981.9_1_4:153273802-153273886:-|nuORF ENST00000263981.9_1_4:153273802-153273886:-|nuORF ENST00000263981.9_1_4:153273802-153273886:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 521.2657470703125 2 521.262945 1040.51134 NaN NaN NaN NaN NaN NaN NaN 68.29 1 67.81 67.31 68.31 -0.48071 0 0 0 0.9706 1 37323 37323 6.3541 0 1 80965 11301 54272 55404 94125 94125 -0.007298686003196053 YVCRICRFI 9 Unmodified _YVCRICRFI_ 0 0 0 chr4:168160293-168162528|123|27.11|0.69|5.3|+|0|TE_info:L1PA11,L1PA11_dup1157,L1,LINE,donor,-,168160047,168160293|None,ANXA10|2 chr4:168160293-168162528|123|27.11|0.69|5.3|+|0|TE_info:L1PA11,L1PA11_dup1157,L1,LINE,donor,-,168160047,168160293|None,ANXA10|2 chr4:168160293-168162528|123|27.11|0.69|5.3|+|0|TE_info:L1PA11,L1PA11_dup1157,L1,LINE,donor,-,168160047,168160293|None,ANXA10|2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.8087768554688 2 586.806996 1171.59944 0.71406 0.00041901 1.081 0.00063435 1.7951 0.0010534 586.8083556915432 82.81 2.0493 76.634 75.932 77.981 -6.1757 242 111 4 0 0 0 0.30562 1 54674 54674 16.942 16.942 1 61015000 80966 112 54273 55405 94126 94126 0.020504287186213332 YVCRKHII 8 Unmodified _YVCRKHII_ 0 0 0 REV__ENST00000511185.5_1_4:2814082-2826487:+|nuORF;REV__ENSG00000087266|ENST00000503393|SH3BP2 REV__ENSG00000087266|ENST00000503393|SH3BP2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 516.2952880859375 2 516.294579 1030.57461 NaN NaN NaN NaN NaN NaN NaN 83.415 1 82.917 82.417 83.417 -0.49751 0 0 0 0.97444 1 45660 45660 0.79363 0 1 + 80967 28155;17783 54274 55406 94127 94127 0.060541169075804646 YVDALKRIL 9 Unmodified _YVDALKRIL_ 0 0 0 nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10;ENST00000523711.5_1_8:1824717-1874701:+|nuORF nc|ENSG00000104728|O15013-7|ARHGEF10 nc|ENSG00000104728|O15013-7|ARHGEF10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 547.8047485351562 2 545.834591 1089.65463 0.44884 0.00024499 0.63458 0.00034637 1.0834 0.00059136 545.8348053903559 48.017 0.33607 47.978 47.827 48.164 -0.038643 54 16 4 0 0 0 0.53666 1 25841 25841 5.2307 0 1 52609000 80968 2227 54275 55407 94128 94128 0.11338881782421595 YVDEKAPEF 9 Unmodified _YVDEKAPEF_ 0 0 0 ENSG00000119888|ENST00000263735|EPCAM ENSG00000119888|ENST00000263735|EPCAM ENSG00000119888|ENST00000263735|EPCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 549.2611694335938 2 549.261122 1096.50769 0.29432 0.00016166 -0.60993 -0.00033501 -0.31561 -0.00017335 549.2607957452898 37.523 0.5476 37.523 37.238 37.786 0 60 28 3 0 0 0 0.10134 1 20011 20011 41.956 22.699 1 28457000 80969 3475 54276 55408 94129 94129 -0.03670259893192451 YVDEKAPEF 9 Unmodified _YVDEKAPEF_ 0 0 0 ENSG00000119888|ENST00000263735|EPCAM ENSG00000119888|ENST00000263735|EPCAM ENSG00000119888|ENST00000263735|EPCAM MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.2614135742188 2 549.261122 1096.50769 0.90075 0.00049475 -1.2788 -0.00070241 -0.37808 -0.00020766 549.2608081470564 42.846 0.41852 38.161 37.934 38.353 -4.6846 73 26 4 0 0 0 0.080011 2 25857 25857;25996 47.594 47.594 1 48165000 80970 3475 54276 55408 94130;94131 94130 -0.03670259893192451 YVDELHGRL 9 Unmodified _YVDELHGRL_ 0 0 0 REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 367.8612670898438 3 367.861096 1100.56146 -0.32845 -0.00012082 1.1954 0.00043972 0.86691 0.0003189 367.86141234724647 29.261 0.26907 29.261 29.142 29.411 0 28 12 3 0 0 0 0.49272 1 15128 15128 4.897 1.0207 1 3829500 + 80971 21471 54277 55409 94132 94132 0.015199573291965862 YVDELHGRL 9 Unmodified _YVDELHGRL_ 0 0 0 REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.8612976074219 3 367.861096 1100.56146 0.60622 0.00022301 -0.044305 -1.6298E-05 0.56192 0.00020671 367.86101701925907 29.21 0.21462 29.148 29.061 29.276 -0.062159 16 9 2 0 0 0 0.49272 1 15104 15104 4.897 1.0207 1 4930200 + 80972 21471 54277 55409 94133 94133 0.015199573291965862 YVDELHGRL 9 Unmodified _YVDELHGRL_ 0 0 0 REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 367.861096 1100.56146 -0.32845 -0.00012082 1.1954 0.00043972 0.86691 0.0003189 367.86141234724647 29.261 0.26907 29.261 29.142 29.411 0 0.056367 0.000547 NaN 4.897 28 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3829500 + 80973 21471 54277 55409 0.015199573291965862 YVDELHGRL 9 Unmodified _YVDELHGRL_ 0 0 0 REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF REV__ENST00000480486.1_1_21:37758395-37770302:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 367.861096 1100.56146 0.60622 0.00022301 -0.044305 -1.6298E-05 0.56192 0.00020671 367.86101701925907 29.21 0.21462 29.148 29.061 29.276 -0.062159 -0.056367 -0.00082106 NaN 4.897 16 9 2 NaN NaN NaN NaN 0 NaN NaN 0 4930200 + 80974 21471 54277 55409 0.015199573291965862 YVDFAEFY 8 Unmodified _YVDFAEFY_ 0 0 0 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 ENSG00000100324|ENST00000216160|TAB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 527.231689453125 2 527.231833 1052.44911 0.52928 0.00027905 -0.64737 -0.00034132 -0.11809 -6.2263E-05 527.2315615595481 59.224 0.30334 59.224 59.004 59.307 0 23 12 3 0 0 0 0.72953 1 32947 32947 14.582 2.0501 1 3212600 80975 1794 54278 55410 94134 94134 -0.07501316467664765 YVDGTSHEPF 10 Unmodified _YVDGTSHEPF_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 576.2528686523438 2 576.253828 1150.4931 -0.23861 -0.0001375 -0.63895 -0.00036819 -0.87756 -0.0005057 576.2534986209174 35.033 0.24656 35.033 34.9 35.146 0 21 12 2 0 0 0 0.52888 1 18501 18501 14.838 0.25658 1 3528500 80976 8120 54279 55411 94135 94135 -0.07612332041321679 YVDGTSHEPF 10 Unmodified _YVDGTSHEPF_ 0 0 0 ENSG00000171603|ENST00000377298|CLSTN1;nc|ENSG00000171603|O94985-2|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 ENSG00000171603|ENST00000377298|CLSTN1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 576.253828 1150.4931 -0.23861 -0.0001375 -0.63895 -0.00036819 -0.87756 -0.0005057 576.2534986209174 35.033 0.24656 35.033 34.9 35.146 0 0 0 NaN 14.838 21 12 2 NaN NaN NaN NaN 0 NaN NaN 0 3528500 80977 8120 54279 55411 -0.07612332041321679 YVDHCKEQNV 10 Unmodified _YVDHCKEQNV_ 0 0 0 ENSG00000144199|ENST00000414820|FAHD2B;ENSG00000115042|ENST00000233379|FAHD2A;ENST00000607780.5_1_2:96676383-96687353:+|nuORF;ENST00000483657.1_1_2:97755791-97757446:-|nuORF;ENST00000463940.1_1_2:96071303-96072959:+|nuORF;ENST00000470100.1_1_2:96072692-96076397:+|nuORF;ENST00000463096.5_1_2:97751812-97756058:-|nuORF ENSG00000144199|ENST00000414820|FAHD2B ENSG00000144199|ENST00000414820|FAHD2B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 412.5608520507812 3 412.188884 1233.54482 0.1629 6.7146E-05 -1.6655 -0.00068651 -1.5026 -0.00061936 412.188161929858 25.246 0.15587 22.363 22.289 22.444 -2.8831 12 9 2 0 0 0 0.21977 1 13805 13805 19.626 1.7628 1 2710800 80978 3080 54280 55412 94136 94136 -0.0626091161907425 YVDKVEKM 8 Oxidation (M) _YVDKVEKM(Oxidation (M))_ YVDKVEKM(1) YVDKVEKM(68) 0 0 1 ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT ENSG00000126016|ENST00000371959|AMOT ENSG00000126016|ENST00000371959|AMOT MULTI-MSMS AL20221201_MKP_PDAC_01 4 514.7603759765625 2 514.260068 1026.50558 1.0598 0.00054501 1.9422 0.0009988 3.002 0.0015438 514.2613539884221 20.458 0.21596 17.765 17.646 17.862 -2.693 15 10 2 0 0 0 0.21258 1 10878 10878 67.838 35.533 1 1406800 80979 3923 54281 55413 94137 94137 703 -0.006610119026390748 YVDLVIKVY 9 Unmodified _YVDLVIKVY_ 0 0 0 ENSG00000159348|ENST00000367249|CYB5R1 ENSG00000159348|ENST00000367249|CYB5R1 ENSG00000159348|ENST00000367249|CYB5R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.3260498046875 2 556.323525 1110.6325 0.77998 0.00043392 0.54058 0.00030074 1.3206 0.00073466 556.3238297988454 72.115 0.3111 71.639 71.441 71.752 -0.4761 32 12 3 0 0 0 0.37804 1 39527 39527 13.508 4.1604 1 5894100 80980 6648 54282 55414 94138 94138 0.0816065731398794 YVDMTLCTD 9 Unmodified _YVDMTLCTD_ 0 0 0 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 ENSG00000144035|ENST00000272425|NAT8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 530.7200927734375 2 530.719918 1059.42528 0.91119 0.00048359 -0.61831 -0.00032815 0.29288 0.00015544 530.71952778684 72.486 0.67628 66.31 65.941 66.618 -6.1757 85 34 3 0 0 0 0.54444 1 47460 47460 4.756 0.81161 1 60543000 80981 5577 54283 55415 94139 94139 -0.10205241288008438 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 573.27880859375 2 573.279315 1144.54408 0.6513 0.00037338 -0.033069 -1.8958E-05 0.61823 0.00035442 573.2791743705204 71.338 0.35217 70.861 70.767 71.12 -0.47735 21 14 3 0 0 0 0.43463 1 39047 39047 10.824 7.5426 1 799290 80982 8955;10214 54284 55416 94140 94140 -0.022413829964762044 YVDPQFLTY 9 Unmodified _YVDPQFLTY_ 0 0 0 nc|ENSG00000181191|Q8NG27|PJA1;ENSG00000181191|ENST00000374571|PJA1;nc|ENSG00000181191|Q8NG27-2|PJA1;nc|ENSG00000198961|O43164-2|PJA2;ENSG00000198961|ENST00000361189|PJA2 nc|ENSG00000181191|Q8NG27|PJA1;nc|ENSG00000198961|O43164-2|PJA2 nc|ENSG00000181191|Q8NG27|PJA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 573.2860717773438 2 573.279315 1144.54408 0.77462 0.00044408 2.6672 0.001529 3.4418 0.0019731 573.2813625288768 78.896 0.21732 72.72 72.611 72.829 -6.1757 16 11 2 0 0 0 0.14 1 51639 51639 29.082 6.6289 1 8696400 80983 8955;10214 54284 55416 94141 94141 -0.022413829964762044 YVDPVITSI 9 Unmodified _YVDPVITSI_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 503.7760009765625 2 503.776408 1005.53826 0.54786 0.000276 0.70036 0.00035282 1.2482 0.00062882 503.7766525782861 69.411 0.35393 69.411 69.203 69.557 0 36 15 3 0 0 0 0.2143 2 38612 38612;38712 21.747 12.399 1 2622100 80984 2385 54285 55417 94142;94143 94142 0.03571518491855841 YVDPVITSI 9 Unmodified _YVDPVITSI_ 0 0 0 nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET nc|ENSG00000105976|P08581-2|MET nc|ENSG00000105976|P08581-2|MET MULTI-MSMS AL20221201_MKP_PDAC_01 4 503.7757873535156 2 503.776408 1005.53826 0.22326 0.00011247 -0.072563 -3.6556E-05 0.1507 7.5918E-05 503.7763751266401 77.005 0.39641 70.829 70.641 71.037 -6.1757 37 21 2 0 0 0 0.10734 1 50408 50408 32.305 18.798 1 18051000 80985 2385 54285 55417 94144 94144 0.03571518491855841 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 523.7976684570312 2 523.797675 1045.5808 0.79207 0.00041489 -2.7787 -0.0014555 -1.9866 -0.0010406 523.7959472887915 49.335 0.32113 49.335 49.215 49.536 0 33 14 3 0 0 0 0.14 1 27141 27141 29.082 12.139 1 9345300 80986 5293 54286 55418 94145 94145 0.059829136200733046 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 523.7975463867188 2 523.797675 1045.5808 0.69454 0.0003638 -1.7612 -0.0009225 -1.0666 -0.0005587 523.7972235736866 49.711 0.35188 49.319 49.159 49.51 -0.3923 39 15 3 0 0 0 0.010611 2 26718 26683;26718 78.728 48.503 1 4765600 80987 5293 54286 55418 94146;94147 94147 0.059829136200733046 YVDPVNKVL 9 Unmodified _YVDPVNKVL_ 0 0 0 nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-4|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 nc|ENSG00000140992|O15530-3|PDPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 523.7960815429688 2 523.797675 1045.5808 0.78448 0.00041091 -0.96845 -0.00050727 -0.18397 -9.6363E-05 523.7967348427118 55.779 0.37106 49.858 49.669 50.041 -5.9211 45 21 3 0 0 0 0.039985 1 35475 35475 49.933 19.708 1 28425000 80988 5293 54286 55418 94148 94148 0.059829136200733046 YVDYDFPT 8 Unmodified _YVDYDFPT_ 0 0 0 nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2 nc|ENSG00000087303|Q14112-2|NID2 nc|ENSG00000087303|Q14112-2|NID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 510.2219848632812 2 510.221465 1018.42838 0.6413 0.0003272 -0.50614 -0.00025825 0.13516 6.8959E-05 510.2215382251322 38.916 0.37333 38.916 38.703 39.077 0 31 16 3 0 0 0 0.6895 1 20817 20817 18.135 6.4947 1 3807700 80989 1467 54287 55419 94149 94149 -0.08009906847325965 YVECFPRCGS 10 Unmodified _YVECFPRCGS_ 0 0 0 REV__nc|ENSG00000178950|O14976-2|GAK REV__nc|ENSG00000178950|O14976-2|GAK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.8350830078125 3 387.500293 1159.47905 -0.42099 -0.00016313 0.81754 0.0003168 0.39655 0.00015366 387.5002177758248 21.389 0.36993 21.389 21.264 21.634 0 100 48 3 0 0 0 0.70951 1 10898 10898 0.77653 0 1 1454000 + 80990 23073 54288 55420 94150 94150 -0.0943102406563412 YVEDTVLFS 9 Unmodified _YVEDTVLFS_ 0 0 0 ENSG00000114790|ENST00000465093|ARHGEF26;nc|ENSG00000114790|Q96DR7-4|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 ENSG00000114790|ENST00000465093|ARHGEF26 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 358.1782531738281 3 358.17809 1071.51244 -0.24017 -8.6022E-05 0.98623 0.00035325 0.74607 0.00026722 358.17833890333304 32.298 0.20306 32.328 32.237 32.44 0.029743 21 8 3 0 0 0 0.4887 1 16950 16950 8.1555 0.54658 1 6790700 80991 3063 54289 55421 94151 94151 -0.020453757504355963 YVEGSIPHI 9 Unmodified _YVEGSIPHI_ 0 0 0 REV__nc|ENSG00000290894|Q96TA0|PCDHB18P REV__nc|ENSG00000290894|Q96TA0|PCDHB18P MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 507.7666320800781 2 507.766374 1013.5182 NaN NaN NaN NaN NaN NaN NaN 76.475 1 76.475 75.975 76.975 0 0 0 0 0.82739 1 42521 42521 4.3292 2.0265 1 + 80992 30034 54290 55422 94152 94152 0.01197767551900597 YVEKEFRI 8 Unmodified _YVEKEFRI_ 0 0 0 REV__ENSG00000165323|ENST00000525166|FAT3 REV__ENSG00000165323|ENST00000525166|FAT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 361.8663635253906 3 361.865958 1082.57605 -0.3076 -0.00011131 0.91407 0.00033077 0.60647 0.00021946 361.86648635259644 29.29 0.22929 29.29 29.182 29.411 0 16 10 3 0 0 0 0.80624 1 15169 15169 1.8442 0 1 755990 + 80993 22004 54291 55423 94153 94153 0.038060294773458736 YVEKFYRI 8 Unmodified _YVEKFYRI_ 0 0 0 nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 nc|ENSG00000113522|Q92878-3|RAD50 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 559.3052978515625 2 559.305667 1116.59678 0.66903 0.00037419 2.9142 0.0016299 3.5832 0.0020041 559.3078810867598 46.361 0.29295 46.025 45.8 46.093 -0.33664 19 14 2 0 0 0 0.078546 1 24825 24825 112.59 52.204 1 5554100 80994 2972 54292 55424 94154 94154 0.04314619856995705 YVEKNHIF 8 Unmodified _YVEKNHIF_ 0 0 0 REV__ENSG00000152952|ENST00000282903|PLOD2 REV__ENSG00000152952|ENST00000282903|PLOD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2789306640625 2 525.274367 1048.53418 1.2022 0.00063148 0.44574 0.00023414 1.6479 0.00086562 525.2748458937647 79.874 0.58819 73.698 73.387 73.975 -6.1757 55 35 2 0 0 0 0.67481 1 52494 52494 19.439 4.6007 1 20245000 + 80995 21143 54293 55425 94155 94155 0.01185473788791569 YVEKVERL 8 Unmodified _YVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 518.2960815429688 2 518.295299 1034.57605 -0.57481 -0.00029792 -0.094956 -4.9215E-05 -0.66977 -0.00034714 518.2951874910708 30.405 0.26134 30.405 30.285 30.546 0 41 12 4 0 0 0 0.15145 1 15769 15769 86.332 30.155 1 23583000 80996 3013 54294 55426 94156 94156 0.060140294773418645 YVEKVERL 8 Unmodified _YVEKVERL_ 0 0 0 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 nc|ENSG00000114019|Q9Y2J4-3|AMOTL2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 518.2954711914062 2 518.295299 1034.57605 0.82576 0.00042799 -0.47522 -0.0002463 0.35054 0.00018168 518.2950585188792 34.384 0.44312 30.289 30.106 30.549 -4.0951 65 25 3 0 0 0 0.12464 2 19848 19848;19979 92.653 38.821 1 108910000 80997 3013 54294 55426 94157;94158 94157 0.060140294773418645 YVELEVEDHRR 11 Unmodified _YVELEVEDHRR_ 0 0 0 REV__ENSG00000164946|ENST00000380880|FREM1 REV__ENSG00000164946|ENST00000380880|FREM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.2444763183594 3 482.244157 1443.71064 0.35911 0.00017318 -0.74549 -0.00035951 -0.38638 -0.00018633 482.2437732071376 74.534 0.24704 74.58 74.481 74.728 0.045967 17 10 2 0 0 0 0.72952 1 41110 41110 0.50596 0 1 2029100 + 80998 21965 54295 55427 94159 94159 0.006534381612482321 YVELQELVM 9 Unmodified _YVELQELVM_ 0 0 0 ENSG00000004939|ENST00000262418|SLC4A1;SLC4A1|p.G699Afs*11|1|0.16|ENSG00000004939|chr17:44253333-44253333|C/-|frameshift_variant ENSG00000004939|ENST00000262418|SLC4A1 ENSG00000004939|ENST00000262418|SLC4A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 562.278076171875 2 562.288825 1122.5631 1.1972 0.00067316 -1.9715 -0.0011086 -0.77433 -0.0004354 562.2870544851314 93.806 1.0847 87.631 87.247 88.332 -6.1757 114 64 2 0 0 0 0.37804 1 62506 62506 13.508 0 1 56092000 80999 291 54296 55428 94160 94160 0.006718303029174422 YVELVHHI 8 Unmodified _YVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.2760620117188 2 505.276909 1008.53927 NaN NaN NaN NaN NaN NaN NaN 43.016 1 42.706 42.206 43.206 -0.31039 0 0 0 0.41217 1 22870 22870 52.693 16.227 1 81000 13664 54297 55429 94161 94161 0.03533777651421133 YVELVHHI 8 Unmodified _YVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 505.2776489257812 2 505.276909 1008.53927 1.12 0.00056591 -0.39895 -0.00020158 0.72105 0.00036433 505.2767535036567 47.878 0.40112 42.644 42.42 42.821 -5.2339 51 24 3 0 0 0 0.2655 2 29699 29699;29828 59.795 25.608 1 22807000 81001 13664 54297 55429 94162;94163 94162 0.03533777651421133 YVELVHHI 8 Unmodified _YVELVHHI_ 0 0 0 ENST00000461710.5_1_20:31948117-31960625:-|nuORF;ENST00000482967.5_1_20:31946851-31989286:-|nuORF;nc|ENSG00000101391|Q96SZ6-5|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-4|CDK5RAP1;nc|ENSG00000101391|Q96SZ6-6|CDK5RAP1;ENSG00000101391|ENST00000346416|CDK5RAP1;nc|ENSG00000101391|Q96SZ6|CDK5RAP1 ENST00000461710.5_1_20:31948117-31960625:-|nuORF ENST00000461710.5_1_20:31948117-31960625:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 505.276909 1008.53927 1.2262 0.00061955 -1.4024 -0.00070858 -0.1762 -8.9031E-05 505.2762420342658 42.759 0.30344 42.759 42.586 42.889 0 0.057312 -0.00067212 NaN 59.795 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 3818000 81002 13664 54297 55429 0.03533777651421133 YVEMKWEF 8 Unmodified _YVEMKWEF_ 0 0 0 ENST00000487527.5_1_17:27916841-27940597:+|nuORF;ENSG00000198720|ENST00000394859|ANKRD13B;ENST00000506531.5_1_11:67057839-67066817:+|nuORF;nc|ENSG00000172932|Q6ZTN6-1|ANKRD13D;ENSG00000172932|ENST00000511455|ANKRD13D ENST00000487527.5_1_17:27916841-27940597:+|nuORF ENST00000487527.5_1_17:27916841-27940597:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.2633666992188 2 566.26261 1130.51067 1.4689 0.00083179 0.5268 0.00029831 1.9957 0.0011301 566.7642490288812 88.144 0.42396 81.968 81.765 82.189 -6.1757 37 23 2 0 0 0 0.80044 1 58148 58148 6.3541 0 1 12361000 81003 10132 54298 55430 94164 94164 -0.0493670804003159 YVEPYINNL 9 Unmodified _YVEPYINNL_ 0 0 0 REV__ENSG00000115339|ENST00000392701|GALNT3 REV__ENSG00000115339|ENST00000392701|GALNT3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 562.783447265625 2 562.784764 1123.55498 -0.096163 -5.4119E-05 -2.3689 -0.0013332 -2.465 -0.0013873 562.783377492481 23.971 0.35733 23.971 23.659 24.016 0 41 17 3 0 0 0 0.32871 1 12181 12181 15.847 0 1 2499300 + 81004 18972 54299 55431 94165 94165 -0.0018598062220007705 YVERLRFHM 9 Unmodified _YVERLRFHM_ 0 0 0 REV__ENST00000409525.1_1_6:31638888-31639059:+|nuORF REV__ENST00000409525.1_1_6:31638888-31639059:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.8245849609375 2 625.826775 1249.639 NaN NaN NaN NaN NaN NaN NaN 65.683 1 65.199 64.699 65.699 -0.48428 0 0 0 0.84369 1 35856 35856 2.3027 0.24298 1 + 81005 26215 54300 55432 94166 94166 0.024162719937066868 YVEVLMSVGS 10 Unmodified _YVEVLMSVGS_ 0 0 0 REV__ENSG00000147606|ENST00000276609|SLC26A7 REV__ENSG00000147606|ENST00000276609|SLC26A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 542.27294921875 2 542.273175 1082.5318 0.21514 0.00011667 1.2929 0.00070113 1.5081 0.0008178 542.2738058259258 92.908 0.71649 92.45 92.169 92.885 -0.4574 94 35 4 0 0 0 0.67033 1 50782 50782 6.2058 0 1 10194000 + 81006 20903 54301 55433 94167 94167 -0.006167427311766005 YVEWCAESF 9 Unmodified _YVEWCAESF_ 0 0 0 REV__ENSG00000112159|ENST00000369393|MDN1 REV__ENSG00000112159|ENST00000369393|MDN1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 566.8057861328125 2 567.23405 1132.45355 0.88275 0.00050073 -1.5108 -0.00085696 -0.62802 -0.00035623 567.2341007880912 28.608 0.23058 25.459 25.303 25.534 -3.1482 17 11 2 0 0 0 0.21242 1 15980 15980 5.2307 0.47466 1 4219100 + 81007 18791 54302 55434 94168 94168 -0.10738175316419074 YVFAENGTVQY 11 Unmodified _YVFAENGTVQY_ 0 0 0 ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF ENSG00000100417|ENST00000216259|PMM1 ENSG00000100417|ENST00000216259|PMM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 645.802978515625 2 645.803685 1289.59282 -1.0728 -0.0006928 0.58247 0.00037616 -0.4903 -0.00031664 645.8042296464151 56.41 0.15427 55.924 55.787 55.941 -0.48554 14 7 2 0 0 0 0.32631 1 30593 30593 25.399 18.298 1 3234100 81008 1821 54303 55435 94169 94169 -0.040395144273816186 YVFAENGTVQY 11 Unmodified _YVFAENGTVQY_ 0 0 0 ENSG00000100417|ENST00000216259|PMM1;ENST00000482178.5_1_22:41980283-41980722:-|nuORF;ENST00000472620.5_1_22:41980283-41985061:-|nuORF;ENST00000485648.5_1_22:41980283-41985809:-|nuORF;ENST00000478337.1_1_22:41980122-41985809:-|nuORF ENSG00000100417|ENST00000216259|PMM1 ENSG00000100417|ENST00000216259|PMM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 645.80126953125 2 645.803685 1289.59282 1.0075 0.00065065 -0.65018 -0.00041989 0.35732 0.00023076 646.3051885634833 63.738 0.44645 57.563 57.306 57.752 -6.1757 60 24 4 0 0 0 0.0047291 2 41271 41139;41271 75.761 54.224 1 27132000 81009 1821 54303 55435 94170;94171 94171 -0.040395144273816186 YVFDRRWDRFR 11 Unmodified _YVFDRRWDRFR_ 0 0 0 ENSG00000146776|ENST00000419735|ATXN7L1;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENST00000474433.5_1_7:105254161-105283525:-|nuORF ENSG00000146776|ENST00000419735|ATXN7L1 ENSG00000146776|ENST00000419735|ATXN7L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 808.4183959960938 2 808.415666 1614.81678 NaN NaN NaN NaN NaN NaN NaN 60.83 1 60.83 60.33 61.33 0 0 0 0 0.94338 1 33924 33924 0.30703 0.30703 1 81010 5794 54304 55436 94172 94172 0.03396238517234451 YVFEDEAMNQ 10 Unmodified _YVFEDEAMNQ_ 0 0 0 REV__ENSG00000106278|ENST00000393386|PTPRZ1 REV__ENSG00000106278|ENST00000393386|PTPRZ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 415.8418579101562 3 415.841261 1244.50195 0.47563 0.00019779 0.9316 0.0003874 1.4072 0.00058518 415.84159204902676 62.977 0.17667 62.49 62.365 62.542 -0.48617 10 8 2 0 0 0 0.70951 1 34347 34347 0.77653 0 1 3299000 + 81011 18496 54305 55437 94173 94173 -0.11051726467144363 YVFGGAYV 8 Unmodified _YVFGGAYV_ 0 0 0 nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B;ENST00000557470.5_1_15:91542266-91544627:-|nuORF;ENST00000554660.1_1_15:91542823-91543794:-|nuORF nc|ENSG00000184056|Q9H267-2|VPS33B nc|ENSG00000184056|Q9H267-2|VPS33B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 438.2171020507812 2 438.218529 874.422505 NaN NaN NaN NaN NaN NaN NaN 19.592 1 19.592 19.092 20.092 0 0 0 0 0.94749 1 9808 9808 11.114 4.7604 1 81012 9218 54306 55438 94174 94174 -0.019729605683437512 YVFGPKLLDK 10 Unmodified _YVFGPKLLDK_ 0 0 0 ENST00000506123.5_1_5:54461313-54461532:+|nuORF ENST00000506123.5_1_5:54461313-54461532:+|nuORF ENST00000506123.5_1_5:54461313-54461532:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3427734375 2 590.342249 1178.66995 0.33151 0.0001957 -0.013311 -7.8582E-06 0.3182 0.00018784 590.3424097622334 54.884 0.75752 54.815 54.541 55.298 -0.068737 62 37 3 0 0 0 0.44171 1 29774 29774 19.362 2.249 1 7151400 81013 14519 54307 55439 94175 94175 0.08775748579591891 YVFGRLTGHL 10 Unmodified _YVFGRLTGHL_ 0 0 0 REV__ENSG00000173064|ENST00000682272|HECTD4 REV__ENSG00000173064|ENST00000682272|HECTD4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.8212890625 2 581.822015 1161.62948 0.48622 0.00028289 -0.61362 -0.00035702 -0.12741 -7.4128E-05 581.8211083458066 83.938 0.21542 83.439 83.313 83.528 -0.49961 12 8 2 0 0 0 0.6606 1 45943 45943 7.2892 0.56607 1 391020 + 81014 22700 54308 55440 94176 94176 0.05512826979838792 YVFLSATI 8 Unmodified _YVFLSATI_ 0 0 0 ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX ENSG00000039123|ENST00000230640|MTREX MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 457.2551879882812 2 457.255111 912.49567 NaN NaN NaN NaN NaN NaN NaN 35.75 1 35.775 35.275 36.275 0.024967 0 0 0 0.97348 1 18913 18913 5.7604 0 1 81015 640 54309 55441 94177 94177 0.03592168154295905 YVFMGQDF 8 Unmodified _YVFMGQDF_ 0 0 0 ENSG00000174600|ENST00000550402|CMKLR1;nc|ENSG00000174600|Q99788-2|CMKLR1;ENSG00000171051|ENST00000304748|FPR1 ENSG00000174600|ENST00000550402|CMKLR1 ENSG00000174600|ENST00000550402|CMKLR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 503.7189025878906 2 503.720578 1005.4266 NaN NaN NaN NaN NaN NaN NaN 66.825 1 66.342 65.842 66.842 -0.48323 0 0 0 0.97444 1 36501 36501 4.3292 1.44 1 81016 8439 54310 55442 94178 94178 -0.07589239136927972 YVFNGHRGQRW 11 Unmodified _YVFNGHRGQRW_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1 nc|ENSG00000196218|P21817-3|RYR1 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 710.3551025390625 2 710.355077 1418.6956 NaN NaN NaN NaN NaN NaN NaN 15.643 1 15.649 15.149 16.149 0.0057774 0 0 0 0.9435 1 7805 7805 0 0 1 81017 9779 54311 55443 94179 94179 0.0030003587460214476 YVFNTASL 8 Unmodified _YVFNTASL_ 0 0 0 ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP ENSG00000129988|ENST00000217407|LBP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 457.7370300292969 2 457.734543 913.454533 0.028764 1.3166E-05 4.1384 0.0018943 4.1671 0.0019074 457.7360956195542 70.39 0.24081 69.911 69.693 69.934 -0.47903 14 10 2 0 0 0 0.79887 1 38475 38475 7.2892 1.5288 1 627650 81018 4169 54312 55444 94180 94180 -0.005655928851979297 YVFPENGLVAY 11 Unmodified _YVFPENGLVAY_ 0 0 0 nc|ENSG00000140650|O15305-2|PMM2;ENST00000564030.5_1_16:8891706-8900277:+|nuORF;ENSG00000140650|ENST00000268261|PMM2 nc|ENSG00000140650|O15305-2|PMM2 nc|ENSG00000140650|O15305-2|PMM2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 636.3218383789062 2 636.318971 1270.62339 NaN NaN NaN NaN NaN NaN NaN 78.709 1 78.223 77.723 78.723 -0.48596 0 0 0 0.77961 1 43109 43109 13.042 6.3193 1 81019 5261 54313 55445 94181 94181 -0.0010973604232731304 YVFQEIKEF 9 Unmodified _YVFQEIKEF_ 0 0 0 REV__ENSG00000031698|ENST00000234677|SARS1 REV__ENSG00000031698|ENST00000234677|SARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3102416992188 2 601.808239 1201.60193 -0.54087 -0.0003255 0.14759 8.8821E-05 -0.39328 -0.00023668 601.8082705276236 77.374 0.19065 76.891 76.765 76.956 -0.4826 15 8 2 0 0 0 0.49272 1 42336 42336 7.9102 1.187 1 975890 + 81020 17148 54314 55446 94182 94182 0.009188789289282795 YVFQRRFVQF 10 Unmodified _YVFQRRFVQF_ 0 0 0 ENSG00000120318|ENST00000239440|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 ENSG00000120318|ENST00000239440|ARAP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 695.3768310546875 2 695.374946 1388.73534 NaN NaN NaN NaN NaN NaN NaN 73.888 1 73.932 73.432 74.432 0.043983 0 0 0 0.99091 1 40725 40725 1.6526 0.17072 1 81021 3508 54315 55447 94183 94183 0.056521628253221934 YVFTAELYP 9 Unmodified _YVFTAELYP_ 0 0 0 ENSG00000197208|ENST00000200652|SLC22A4 ENSG00000197208|ENST00000200652|SLC22A4 ENSG00000197208|ENST00000200652|SLC22A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.7674255371094 3 368.186697 1101.53826 NaN NaN NaN NaN NaN NaN NaN 13.879 1 13.848 13.348 14.348 -0.030868 0 0 0 0.8622 1 6733 6733 0 0 1 81022 9927 54316 55448 94184 94184 -0.008444815081702473 YVFTINEY 8 Unmodified _YVFTINEY_ 0 0 0 REV__ENSG00000090530|ENST00000319332|P3H2 REV__ENSG00000090530|ENST00000319332|P3H2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.7510375976562 2 524.752933 1047.49131 NaN NaN NaN NaN NaN NaN NaN 61.396 1 60.907 60.407 61.407 -0.48932 0 0 0 0.77249 1 33440 33440 24.674 0 1 + 81023 17860 54317 55449 94185 94185 -0.030533410592852306 YVFTWRQE 8 Unmodified _YVFTWRQE_ 0 0 0 chr18:23950159-23952990|51|23.41|0.86|4.77|+|1|LAMA3,LAMA3|1;chr18:23950159-23951663|67|18.97|0.45|5.39|+|1|LAMA3,None|1 chr18:23950159-23952990|51|23.41|0.86|4.77|+|1|LAMA3,LAMA3|1 chr18:23950159-23952990|51|23.41|0.86|4.77|+|1|LAMA3,LAMA3|1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.77685546875 2 564.777274 1127.53999 0.57574 0.00032517 0.20887 0.00011797 0.78461 0.00044313 564.7771551435653 48.887 0.39117 48.843 48.573 48.964 -0.04369 26 19 2 0 0 0 0.6895 1 26400 26400 18.135 1.0221 1 2839900 81024 96 54318 55450 94186 94186 -0.01867427699539803 YVFYSCIFI 9 Unmodified _YVFYSCIFI_ 0 0 0 REV__ENST00000495933.1_1_2:46839372-46840883:-|nuORF REV__ENST00000495933.1_1_2:46839372-46840883:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 577.279296875 2 577.783179 1153.5518 0.55232 0.00031912 -3.2221 -0.0018617 -2.6698 -0.0015426 577.7810932119049 53.123 0.21795 53.123 53.003 53.221 0 15 9 2 0 0 0 0.17666 1 29438 29438 19.439 0 1 1595100 + 81025 27957 54319 55451 94187 94187 -0.01882947000558488 YVGDAYLVL 9 Unmodified _YVGDAYLVL_ 0 0 0 nc|ENSG00000006747|Q9Y6U3-2|SCIN;ENSG00000006747|ENST00000297029|SCIN nc|ENSG00000006747|Q9Y6U3-2|SCIN nc|ENSG00000006747|Q9Y6U3-2|SCIN MULTI-MSMS AL20221201_MKP_PDAC_01 4 506.772216796875 2 506.771126 1011.5277 1.1319 0.0005736 -0.84088 -0.00042613 0.29099 0.00014747 506.77024579302145 86.785 0.46116 80.609 80.397 80.858 -6.1757 40 24 2 0 0 0 0.078417 1 57150 57150 38.151 0 1 24375000 81026 350 54320 55452 94188 94188 0.02239535837418316 YVGFRKAKY 9 Unmodified _YVGFRKAKY_ 0 0 0 ENST00000249837.7_1_15:62217673-62219407:-|nuORF ENST00000249837.7_1_15:62217673-62219407:-|nuORF ENST00000249837.7_1_15:62217673-62219407:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 565.7691040039062 2 566.319109 1130.62366 0.73081 0.00041387 -0.26788 -0.00015171 0.46293 0.00026217 566.3188523734043 66.843 0.64863 60.667 60.332 60.981 -6.1757 57 36 2 0 0 0 0.203 1 43340 43340 9.3474 2.0582 1 21584000 81027 11133 54321 55453 94189 94189 0.06357728468174173 YVGIPECIKQY 11 Unmodified _YVGIPECIKQY_ 0 0 0 ENST00000560776.1_1_15:59961053-59961500:-|nuORF;ENST00000478981.1_1_15:59957553-59961125:-|nuORF ENST00000560776.1_1_15:59961053-59961500:-|nuORF ENST00000560776.1_1_15:59961053-59961500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 438.2238159179688 3 438.225046 1311.65331 0.99954 0.00043802 -2.5645 -0.0011238 -1.565 -0.0006858 438.22382098010956 57.498 0.29462 57.432 57.259 57.554 -0.066036 21 14 2 0 0 0 0.71618 1 31313 31313 1.1098 0 1 1514900 81028 15314 54322 55454 94190 94190 0.009948796313437924 YVGKATQLPR 10 Unmodified _YVGKATQLPR_ 0 0 0 REV__Charlie4a_dup1193|chr6:30900424-30900521:-|1.096940987147029|0.461154855418863|1.25|179.0|1|1|sense REV__Charlie4a_dup1193|chr6:30900424-30900521:-|1.096940987147029|0.461154855418863|1.25|179.0|1|1|sense MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 566.2928466796875 2 566.827298 1131.64004 0.80621 0.00045698 -2.6138 -0.0014816 -1.8076 -0.0010246 567.3272841001964 68.608 0.16084 68.634 68.54 68.701 0.025146 10 7 2 0 0 0 0.23489 1 37690 37690 8.7454 3.4485 1 1075000 + 81029 16765 54323 55455 94191 94191 0.07948809634262943 YVGKVEARY 9 Unmodified _YVGKVEARY_ 0 0 0 REV__nc|ENSG00000166557|Q9Y3Q3-2|TMED3 REV__nc|ENSG00000166557|Q9Y3Q3-2|TMED3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.1978759765625 3 362.197708 1083.57129 0.59044 0.00021386 0.62857 0.00022767 1.219 0.00044152 362.19770689267057 42.954 0.19197 42.954 42.834 43.026 0 17 9 3 0 0 0 0.55144 1 23302 23302 2.4985 0.65425 1 4141400 + 81030 22133 54324 55456 94192 94192 0.032851453345756454 YVGRHQFGHMH 11 Unmodified _YVGRHQFGHMH_ 0 0 0 ENST00000400246.5_1_22:32241096-32266721:+|nuORF ENST00000400246.5_1_22:32241096-32266721:+|nuORF ENST00000400246.5_1_22:32241096-32266721:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 684.8237915039062 2 684.822555 1367.63056 NaN NaN NaN NaN NaN NaN NaN 74.346 1 73.87 73.37 74.37 -0.47588 0 0 0 0.9385 1 40689 40689 3.5965 1.7523 1 81031 12873 54325 55457 94193 94193 -0.0385528192291531 YVGRVKSF 8 Unmodified _YVGRVKSF_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 478.2721252441406 2 478.271627 954.528701 -0.049327 -2.3592E-05 0.29923 0.00014311 0.2499 0.00011952 478.2718886627691 35.464 0.20747 35.489 35.373 35.581 0.024971 13 9 2 0 0 0 0.42423 1 18777 18777 42.095 13.608 1 1625900 81032 1309 54326 55458 94194 94194 0.0496179499699565 YVGRVKSF 8 Unmodified _YVGRVKSF_ 0 0 0 nc|ENSG00000080839|P28749-2|RBL1;ENSG00000080839|ENST00000373664|RBL1 nc|ENSG00000080839|P28749-2|RBL1 nc|ENSG00000080839|P28749-2|RBL1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 478.271627 954.528701 0.70158 0.00033555 0.77213 0.00036929 1.4737 0.00070483 478.2718490563849 39.677 0.15942 35.226 35.107 35.267 -4.4509 -0.13149 0.00010296 NaN 42.095 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 9118100 81033 1309 54326 55458 0.0496179499699565 YVHEQWNLI 9 Unmodified _YVHEQWNLI_ 0 0 0 HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|367|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|367|2|anti-sense HERVK-int_dup102|chr7:4583489-4590929:-|1.3871470247131856|0.4463608682754711|1.64|175.0|367|2|anti-sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.7870483398438 2 601.303655 1200.59276 0.42936 0.00025818 -0.19099 -0.00011485 0.23837 0.00014333 601.3037330491145 92.696 0.28781 92.239 92.088 92.376 -0.45741 38 12 4 0 0 0 0.53666 1 50611 50611 5.2307 0.90143 1 3252400 81034 15923 54327 55459 94195 94195 0.00048530363278587174 YVHGEHSIAF 10 Unmodified _YVHGEHSIAF_ 0 0 0 REV__ENSG00000180198|ENST00000683442|RCC1 REV__ENSG00000180198|ENST00000683442|RCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 387.189208984375 3 387.189212 1158.54581 NaN NaN NaN NaN NaN NaN NaN 65.057 1 65.057 64.557 65.557 0 0 0 0 0.97302 1 36293 36293 1.7423 0.28716 1 + 81035 23143 54328 55460 94196 94196 -0.027123291878751843 YVHGEHSIAF 10 Unmodified _YVHGEHSIAF_ 0 0 0 REV__ENSG00000180198|ENST00000683442|RCC1 REV__ENSG00000180198|ENST00000683442|RCC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2813720703125 2 580.28018 1158.54581 1.2467 0.00072346 1.6483 0.0009565 2.8951 0.00168 580.281131506369 34.104 0.36175 30.118 29.894 30.256 -3.9853 33 19 2 0 0 0 0.063761 2 19564 19564;19696 54.774 3.3583 1 13909000 + 81036 23143 54328 55460 94197;94198 94197 -0.027123291878751843 YVHINHLY 8 Unmodified _YVHINHLY_ 0 0 0 REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF REV__ENST00000373425.7_1_9:129850849-129851203:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 353.5186462402344 3 353.518781 1057.53451 -0.47302 -0.00016722 0.42497 0.00015023 -0.048056 -1.6989E-05 353.5189054185564 36.533 0.36251 36.283 36.109 36.471 -0.2497 51 16 5 0 0 0 0.80044 1 19235 19235 4.3292 0 1 68480000 + 81037 26146 54329 55461 94199 94199 0.00804893508643545 YVHLDSPI 8 Unmodified _YVHLDSPI_ 0 0 0 REV__nc|ENSG00000256061|Q8WXU2-2|DNAAF4 REV__nc|ENSG00000256061|Q8WXU2-2|DNAAF4 MSMS AL20221201_MKP_PDAC_01 4 472.245849609375 2 472.247818 942.481082 NaN NaN NaN NaN NaN NaN NaN 36.296 1 32.103 31.603 32.603 -4.1928 0 0 0 0.95201 1 21181 21181 10.183 0 1 + 81038 29984 54330 55462 94200 94200 0.007540960061305668 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(99)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2471923828125 2 525.247295 1048.48004 0.53514 0.00028108 -0.86354 -0.00045357 -0.3284 -0.00017249 525.2469279842239 29.424 0.31468 29.343 29.211 29.525 -0.080431 68 18 4 0 0 0 0.1036 2 15209 15209;15326 98.807 62.341 1 480770000 81039 5175 54331 55463 94201;94202 94201 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(86)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2471923828125 2 525.247295 1048.48004 0.55203 0.00028995 -0.93659 -0.00049194 -0.38455 -0.00020198 525.2469083907858 29.717 0.58066 29.636 29.501 30.082 -0.080429 87 24 5 0 0 0 0.15234 2 15436 15436;15538 86.121 57.948 1 444410000 81040 5175 54331 55463 94203;94204 94203 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(67)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2479248046875 2 525.247295 1048.48004 0.25379 0.0001333 0.21872 0.00011488 0.4725 0.00024818 525.7488030781493 30.865 1.4679 30.762 30.258 31.726 -0.10269 82 58 2 0 0 0 0.21786 4 16129 15953;16129;16280;16431 67.035 36.737 1 2105500 81041 5175 54331 55463 94205;94206;94207;94208 94206 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(40)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2472534179688 2 525.247295 1048.48004 -0.35131 -0.00018452 1.742 0.00091497 1.3907 0.00073045 525.2479858683364 33.442 0.47837 33.283 33.171 33.649 -0.15918 33 19 2 0 0 0 0.44122 1 17424 17424 40.449 30.265 1 833070 81042 5175 54331 55463 94209 94209 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(57)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2476806640625 2 525.247295 1048.48004 NaN NaN NaN NaN NaN NaN NaN 30.534 1 30.432 29.932 30.932 -0.10269 0 0 0 0.37735 1 15848 15848 56.541 35.67 1 81043 5175 54331 55463 94210 94210 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(40)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.2466430664062 2 525.247295 1048.48004 NaN NaN NaN NaN NaN NaN NaN 32.739 1 32.582 32.082 33.082 -0.15747 0 0 0 0.50394 1 17058 17058 40.449 17.996 1 81044 5175 54331 55463 94211 94211 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(140)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2465209960938 2 525.247295 1048.48004 0.00023802 1.2502E-07 -1.0021 -0.00052637 -1.0019 -0.00052624 525.2469194108595 29.328 0.28405 29.358 29.204 29.488 0.030106 37 13 4 0 0 0 0.055232 1 15270 15270 136.08 83.388 1 94532000 81045 5175 54331 55463 94212 94212 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(99)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 525.2470703125 2 525.247295 1048.48004 -0.029333 -1.5407E-05 -0.54424 -0.00028586 -0.57357 -0.00030127 525.2470215563668 29.571 0.43319 29.602 29.488 29.921 0.030106 47 18 4 0 0 0 0.1036 2 15408 15408;15512 98.807 62.341 1 74274000 81046 5175 54331 55463 94213;94214 94213 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(99)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2474975585938 2 525.247295 1048.48004 0.63339 0.00033268 -0.66622 -0.00034993 -0.032836 -1.7247E-05 525.2470344764854 33.025 0.48861 29.169 28.924 29.413 -3.8562 122 30 5 0 0 0 0.1036 2 18947 18822;18947 98.807 62.341 1 827310000 81047 5175 54331 55463 94215;94216 94216 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(120)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2479858398438 2 525.247295 1048.48004 1.0768 0.00056561 -0.89244 -0.00046875 0.1844 9.6857E-05 525.2469808992062 33.413 0.99524 29.428 29.242 30.238 -3.9853 183 55 5 0 0 0 0.073316 5 19446 19075;19193;19309;19446;19573 120.86 77.889 1 944410000 81048 5175 54331 55463 94217;94218;94219;94220;94221 94220 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ YVHM(1)VTHF YVHM(99)VTHF 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.2464599609375 2 525.247295 1048.48004 0.97858 0.000514 -3.3016 -0.0017341 -2.323 -0.0012201 525.2458789355532 34.773 0.51604 30.678 30.366 30.882 -4.0951 41 30 2 0 0 0 0.1036 2 20116 19991;20116 98.807 64.62 1 6010000 81049 5175 54331 55463 94222;94223 94223 950 -0.04226441634409639 YVHMVTHF 8 Oxidation (M) _YVHM(Oxidation (M))VTHF_ 0 0 1 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 525.247295 1048.48004 -0.025453 -1.3369E-05 -1.558 -0.00081835 -1.5835 -0.00083172 525.2466088935404 29.528 0.27114 29.528 29.391 29.662 0 0.17846 -0.0006195 NaN 136.08 63 17 4 NaN NaN NaN NaN 0 NaN NaN 0 158780000 81050 5175 54331 55463 950 -0.04226441634409639 YVHMVTHF 8 Unmodified _YVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 517.2501220703125 2 517.249837 1032.48512 -0.075341 -3.897E-05 -0.076477 -3.9558E-05 -0.15182 -7.8528E-05 517.2498277777503 42.351 0.318 42.044 41.9 42.218 -0.30682 39 15 3 0 0 0 0.078553 2 22458 22458;22557 112.56 62.89 1 123700000 81051 5175 54331 55464 94224;94225 94224 -0.02982137771800808 YVHMVTHF 8 Unmodified _YVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 517.2492065429688 2 517.249837 1032.48512 0.11641 6.0215E-05 -0.64433 -0.00033328 -0.52792 -0.00027307 517.2495995684037 42.087 0.28962 42.078 41.937 42.227 -0.0088196 35 13 3 0 0 0 0.078553 2 22489 22489;22594 112.56 62.89 1 96261000 81052 5175 54331 55464 94226;94227 94226 -0.02982137771800808 YVHMVTHF 8 Unmodified _YVHMVTHF_ 0 0 0 ENSG00000139644|ENST00000267115|TMBIM6;nc|ENSG00000139644|P55061-2|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 ENSG00000139644|ENST00000267115|TMBIM6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 517.2499389648438 2 517.249837 1032.48512 0.51652 0.00026717 -0.39118 -0.00020234 0.12534 6.4834E-05 517.2497989040623 46.655 2.363 41.575 41.29 43.653 -5.0805 664 214 5 0 0 0 0.078553 11 28849 28700;28849;28978;29108;29243;29382;29505;29914;30034;30204;30335 112.56 62.89 1 1782799999.9999998 81053 5175 54331 55464 94228;94229;94230;94231;94232;94233;94234;94235;94236;94237;94238 94229 -0.02982137771800808 YVHNDIFRY 9 Unmodified _YVHNDIFRY_ 0 0 0 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 ENSG00000145907|ENST00000356245|G3BP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5368347167969 3 409.536612 1225.58801 -0.12838 -5.2577E-05 0.27433 0.00011235 0.14595 5.9772E-05 409.5370625223964 42.163 0.12597 42.154 42.101 42.227 -0.0088196 10 5 2 0 0 0 0.073961 1 22587 22587 39.213 23.965 1 9331300 81054 5738 54332 55465 94239 94239 -0.015763537794782678 YVHQTVTCGI 10 Unmodified _YVHQTVTCGI_ 0 0 0 REV__ENST00000555309.5_1_14:21681220-21698517:-|nuORF REV__ENST00000555309.5_1_14:21681220-21698517:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 560.7764892578125 2 560.776416 1119.53828 NaN NaN NaN NaN NaN NaN NaN 94.62 1 94.2 93.7 94.7 -0.42044 0 0 0 1.0061 1 51692 51692 0 0 1 + 81055 28767 54333 55466 94240 94240 -0.016708047797692416 YVHYWEKGGI 10 Unmodified _YVHYWEKGGI_ 0 0 0 ENSG00000159128|ENST00000290219|IFNGR2;IFNGR2-NUDCD3|1|fusion ENSG00000159128|ENST00000290219|IFNGR2 ENSG00000159128|ENST00000290219|IFNGR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 418.2071838378906 3 417.876746 1250.60841 -0.44335 -0.00018526 -0.91981 -0.00038437 -1.3632 -0.00056963 417.8766296886611 21.998 1.5171 21.998 21.478 22.995 0 267 129 5 0 0 0 0.70951 1 10951 10951 0.77653 0.078866 1 34852000 81056 6627 54334 55467 94241 94241 -0.0068718311968041235 YVIDPIKGLKL 11 Unmodified _YVIDPIKGLKL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 420.263916015625 3 420.26383 1257.76966 1.0522 0.00044219 -0.1619 -6.8043E-05 0.89026 0.00037414 420.263380074437 70.836 0.72732 70.871 70.592 71.319 0.035515 66 32 4 0 0 0 0.42951 1 38970 38970 19.987 14.939 1 8698000 81057 16412 54335 55468 94242 94242 0.1510856619356673 YVIDPIKGLKL 11 Unmodified _YVIDPIKGLKL_ 0 0 0 nc|ENSG00000178209|Q15149|PLEC;nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC nc|ENSG00000178209|Q15149|PLEC nc|ENSG00000178209|Q15149|PLEC MULTI-MSMS AL20221201_MKP_PDAC_01 4 420.2639465332031 3 420.26383 1257.76966 1.3544 0.00056922 -0.53585 -0.0002252 0.81858 0.00034402 420.2635609742352 92.178 0.24303 86.002 85.872 86.115 -6.1757 32 14 3 0 0 0 0.13384 1 60904 60904 38.559 29.315 1 21576000 81058 16412 54335 55468 94243 94243 0.1510856619356673 YVIDQGETDVY 11 Unmodified _YVIDQGETDVY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.2968139648438 2 651.298433 1300.58231 0.046617 3.0362E-05 -1.2428 -0.0008094 -1.1961 -0.00077904 651.2972806774851 49.085 0.98161 49.085 48.852 49.834 0 80 46 4 0 0 0 0.020698 1 26956 26956 57.249 40.136 1 14270000 81059 2618 54336 55469 94244 94244 -0.05595541872457943 YVIDQGETDVY 11 Unmodified _YVIDQGETDVY_ 0 0 0 nc|ENSG00000108946|P10644-2|PRKAR1A;ENSG00000108946|ENST00000589228|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A nc|ENSG00000108946|P10644-2|PRKAR1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.7999267578125 2 651.298433 1300.58231 0.95752 0.00062363 -2.0219 -0.0013169 -1.0644 -0.00069325 651.2969772206849 57.525 0.38067 51.497 51.372 51.753 -6.0275 35 20 2 0 0 0 0.01584 2 36785 36785;36911 61.602 38.866 1 23258000 81060 2618 54336 55469 94245;94246 94245 -0.05595541872457943 YVIDVMGETSE 11 Unmodified _YVIDVMGETSE_ 0 0 0 REV__nc|ENSG00000183530|Q5THK1-3|PRR14L REV__nc|ENSG00000183530|Q5THK1-3|PRR14L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7816162109375 2 621.781561 1241.54857 NaN NaN NaN NaN NaN NaN NaN 15.023 1 15.009 14.509 15.509 -0.014067 0 0 0 0.9435 1 7348 7348 0 0 1 + 81061 23354 54337 55470 94247 94247 -0.0625428663583989 YVIGRYLHL 9 Unmodified _YVIGRYLHL_ 0 0 0 REV__ENST00000259075.6_2_2:161993477-162036252:+|nuORF REV__ENST00000259075.6_2_2:161993477-162036252:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 378.5547180175781 3 378.553715 1132.63931 NaN NaN NaN NaN NaN NaN NaN 58.863 1 52.788 52.288 53.288 -6.0745 0 0 0 0.27852 1 37741 37741 26.268 5.8536 1 + 81062 24950 54338 55471 94248 94248 0.07830014985211164 YVIGWVFLYEK 11 Unmodified _YVIGWVFLYEK_ 0 0 0 ENST00000572418.1_1_17:3807220-3819678:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1 ENST00000572418.1_1_17:3807220-3819678:-|nuORF ENST00000572418.1_1_17:3807220-3819678:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 708.8816528320312 2 708.881739 1415.74892 NaN NaN NaN NaN NaN NaN NaN 15.332 1 15.337 14.837 15.837 0.0057774 0 0 0 0.9435 1 7637 7637 0 0 1 81063 2566 54339 55472 94249 94249 0.05767975813864723 YVIHGKELL 9 Unmodified _YVIHGKELL_ 0 0 0 REV__nc|ENSG00000112425|O95278-6|EPM2A REV__nc|ENSG00000112425|O95278-6|EPM2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 357.8778076171875 3 357.878087 1070.61243 -0.41013 -0.00014678 -0.24377 -8.7241E-05 -0.65391 -0.00023402 357.8779382951905 36.703 0.23919 36.453 36.315 36.554 -0.2497 13 10 2 0 0 0 0.46577 1 19274 19274 5.7319 0 1 4298600 + 81064 18818 54340 55473 94250 94250 0.07994906374028687 YVIHLWDLNH 10 Unmodified _YVIHLWDLNH_ 0 0 0 ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR ENSG00000159461|ENST00000290649|AMFR MULTI-SECPEP AL20221201_MKP_PDAC_01 4 654.83642578125 2 655.33803 1308.66151 0.31437 0.00020602 -3.1135 -0.0020404 -2.7992 -0.0018344 655.3358363132941 99.665 0.092499 93.49 93.432 93.525 -6.1757 9 5 2 0 0 0 0.22993 1 66445 66445 7.9102 0 1 18662000 81065 6659 54341 55474 94251 94251 0.01952194662999318 YVIILLNLRS 10 Unmodified _YVIILLNLRS_ 0 0 0 ENSG00000176555|ENST00000319988|OR4S1 ENSG00000176555|ENST00000319988|OR4S1 ENSG00000176555|ENST00000319988|OR4S1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 602.3775024414062 2 602.376623 1202.73869 0.96293 0.00058005 0.12942 7.7958E-05 1.0923 0.000658 602.3765631050113 105.99 0.97316 99.811 99.547 100.52 -6.1757 345 148 3 0 0 0 0.72292 1 71114 71114 0.35063 0 1 11909000 81066 8603 54342 55475 94252 94252 0.1454341287931129 YVIPELNIHC 10 Unmodified _YVIPELNIHC_ 0 0 0 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 ENSG00000105738|ENST00000222345|SIPA1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8072509765625 2 600.807716 1199.60088 0.075488 4.5354E-05 1.236 0.00074258 1.3115 0.00078793 600.8084356345681 73.325 0.30684 73.369 73.186 73.493 0.043594 34 13 3 0 0 0 0.27276 1 40357 40357 29.082 2.1979 1 12694000 81067 2360 54343 55476 94253 94253 0.009063412883961064 YVIPHPVHAF 10 Unmodified _YVIPHPVHAF_ 0 0 0 ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111 ENSG00000157450|ENST00000348370|RNF111 ENSG00000157450|ENST00000348370|RNF111 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.8818359375 3 393.881831 1178.62366 0.12479 4.9153E-05 -1.0911 -0.00042975 -0.96627 -0.0003806 393.88143320112675 48.853 0.21358 48.809 48.694 48.908 -0.04369 18 10 2 0 0 0 0.32072 1 26364 26364 26.268 9.7023 1 3628900 81068 6520 54344 55477 94254 94254 0.04149728468155445 YVIQKFFEF 9 Unmodified _YVIQKFFEF_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.323486328125 2 610.82115 1219.62775 0.014379 8.783E-06 0.32472 0.00019835 0.3391 0.00020713 611.3230297368691 84.774 0.1622 84.837 84.743 84.905 0.063171 11 6 2 0 0 0 0.098164 1 46931 46931 43.858 13.222 1 13666000 81069 780;4627 54345 55478 94255 94255 0.026717731712096793 YVIQKFFEF 9 Unmodified _YVIQKFFEF_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2;nc|ENSG00000134644|Q14671-4|PUM1;nc|ENSG00000134644|Q14671-2|PUM1;nc|ENSG00000134644|Q14671|PUM1;ENSG00000134644|ENST00000426105|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000134644|Q14671-4|PUM1 nc|ENSG00000055917|Q8TB72-2|PUM2 MSMS AL20221201_MKP_PDAC_01 4 610.8208618164062 2 610.82115 1219.62775 NaN NaN NaN NaN NaN NaN NaN 98.774 1 92.599 92.099 93.099 -6.1757 0 0 0 0.025508 1 65574 65574 88.954 47.114 1 81070 780;4627 54345 55478 94256 94256 0.026717731712096793 YVIQLFLI 8 Unmodified _YVIQLFLI_ 0 0 0 REV__ENST00000431138.5_1_7:87516207-87516695:+|nuORF REV__ENST00000431138.5_1_7:87516207-87516695:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.8083190917969 2 504.810054 1007.60555 NaN NaN NaN NaN NaN NaN NaN 104.6 1 104.56 104.06 105.06 -0.048737 0 0 0 0.97444 1 58079 58079 2.5775 0 1 + 81071 26974 54346 55479 94257 94257 0.10205593493469678 YVIQLFLI 8 Unmodified _YVIQLFLI_ 0 0 0 REV__ENST00000431138.5_1_7:87516207-87516695:+|nuORF REV__ENST00000431138.5_1_7:87516207-87516695:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 504.8086853027344 2 504.810054 1007.60555 1.5693 0.0007922 -1.2169 -0.0006143 0.35241 0.0001779 504.8080381008376 104.62 0.28404 98.44 98.275 98.559 -6.1757 29 19 2 0 0 0 0.80676 1 70001 70001 2.5775 0 1 15502000 + 81072 26974 54346 55479 94258 94258 0.10205593493469678 YVIQLWSV 8 Unmodified _YVIQLWSV_ 0 0 0 REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 504.2842712402344 2 504.28166 1006.54877 0.39093 0.00019714 2.0597 0.0010387 2.4507 0.0012358 504.28353927233064 48.52 0.31283 48.476 48.341 48.654 -0.04369 22 15 2 0 0 0 0.63229 1 26193 26193 23.148 2.2772 1 1881400 + 81073 27749 54347 55480 94259 94259 0.045755459369502205 YVISAPKVF 9 Unmodified _YVISAPKVF_ 0 0 0 CON__Q1A7A4 CON__Q1A7A4 CON__Q1A7A4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 512.2972412109375 2 512.29731 1022.58007 NaN NaN NaN NaN NaN NaN NaN 56.453 1 55.968 55.468 56.468 -0.48554 0 0 0 0.6032 1 30655 30655 12.532 1.7076 1 + 81074 186 54348 55481 94260 94260 0.0696811897103089 YVISSALLL 9 Unmodified _YVISSALLL_ 0 0 0 REV__ENST00000436441.5_3_9:135172278-135172338:-|nuORF REV__ENST00000436441.5_3_9:135172278-135172338:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 489.7978210449219 2 489.797143 977.579734 0.56729 0.00027785 1.376 0.00067395 1.9433 0.0009518 489.7977337721752 93.376 0.40714 92.918 92.683 93.09 -0.4574 40 17 3 0 0 0 0.46577 1 50967 50967 9.3474 0 1 2147100 + 81075 27033 54349 55482 94261 94261 0.09004699251181592 YVISSALLL 9 Unmodified _YVISSALLL_ 0 0 0 REV__ENST00000436441.5_3_9:135172278-135172338:-|nuORF REV__ENST00000436441.5_3_9:135172278-135172338:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 978.5903930664062 1 978.58701 977.579734 0.30893 0.00030232 1.2473 0.0012206 1.5562 0.0015229 978.5885780852843 93.354 0.34122 92.896 92.728 93.069 -0.4574 23 14 2 0 0 0 0.12841 1 50980 50980 30.225 0 1 904920 + 81076 27033 54349 55482 94262 94262 0.09004699251181592 YVKALLLL 8 Unmodified _YVKALLLL_ 0 0 0 REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 466.8132629394531 2 466.812596 931.61064 0.1149 5.3639E-05 0.33285 0.00015538 0.44776 0.00020902 466.8126805145011 76.87 0.23384 76.92 76.776 77.01 0.05011 15 9 2 0 0 0 0.67481 1 42407 42407 19.439 0 1 1438500 + 81077 22280 54350 55483 94263 94263 0.1420989735609055 YVKDDDGTF 9 Unmodified _YVKDDDGTF_ 0 0 0 REV__ENSG00000168758|ENST00000305476|SEMA4C REV__ENSG00000168758|ENST00000305476|SEMA4C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 530.2330322265625 2 530.235104 1058.45566 0.43308 0.00022963 -2.4167 -0.0012814 -1.9836 -0.0010518 530.2336100498272 69.366 0.26569 69.366 69.269 69.534 0 18 11 2 0 0 0 0.55144 1 38669 38669 4.3292 0.38484 1 930610 + 81078 22340 54351 55484 94264 94264 -0.0712342330696174 YVKDDDGTF 9 Unmodified _YVKDDDGTF_ 0 0 0 REV__ENSG00000168758|ENST00000305476|SEMA4C REV__ENSG00000168758|ENST00000305476|SEMA4C MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 530.235104 1058.45566 0.43308 0.00022963 -2.4167 -0.0012814 -1.9836 -0.0010518 530.2336100498272 69.366 0.26569 69.366 69.269 69.534 0 0 0 NaN 4.3292 18 11 2 NaN NaN NaN NaN 0 NaN NaN 0 930610 + 81079 22340 54351 55484 -0.0712342330696174 YVKHSISF 8 Unmodified _YVKHSISF_ 0 0 0 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 ENSG00000185009|ENST00000355264|AP3M1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 490.7641296386719 2 490.763635 979.512717 NaN NaN NaN NaN NaN NaN NaN 35.728 1 35.753 35.253 36.253 0.024967 0 0 0 0.30911 1 18901 18901 62.573 24.599 1 81080 9317 54352 55485 94265 94265 0.02214088760104005 YVKILGKRK 9 Unmodified _YVKILGKRK_ 0 0 0 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 ENSG00000162928|ENST00000295030|PEX13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.8665771484375 2 552.866226 1103.7179 -0.53055 -0.00029332 0.11749 6.4957E-05 -0.41306 -0.00022837 552.8663341608506 105.94 0.11849 105.9 105.85 105.96 -0.048111 17 11 2 0 0 0 0.62242 1 58722 58722 0 0 1 3062700 81081 6931 54353 55486 94266 94266 0.17018867290335038 YVKLEKLDI 9 Unmodified _YVKLEKLDI_ 0 0 0 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1;nc|ENSG00000006125|P63010-3|AP2B1 nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000006125|P63010|AP2B1 nc|ENSG00000006125|P63010|AP2B1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2958984375 2 560.834257 1119.65396 NaN NaN NaN NaN NaN NaN NaN 38.482 1 38.482 37.982 38.982 0 0 0 0 0.7818 1 20560 20560 6.7232 0 1 81082 1783;329 54354 55487 94267 94267 0.09892042342721652 YVKLLLLLI 9 Unmodified _YVKLLLLLI_ 0 0 0 REV__nc|ENSG00000122223|Q9BZW8-4|CD244 REV__nc|ENSG00000122223|Q9BZW8-4|CD244 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 363.2529602050781 3 363.254494 1086.74165 NaN NaN NaN NaN NaN NaN NaN 46.315 1 46.281 45.781 46.781 -0.033417 0 0 0 0.86004 1 24914 24914 0.26902 0.1097 1 + 81083 19335 54355 55488 94268 94268 0.20175288004156755 YVKRTWYKKFV 11 Unmodified _YVKRTWYKKFV_ 0 0 0 ENST00000497021.1_1_3:100471523-100484734:-|nuORF;nc|ENSG00000154175|Q7Z7G0-2|ABI3BP;ENST00000470336.5_1_3:100469341-100565327:-|nuORF;nc|ENSG00000154175|Q7Z7G0-3|ABI3BP;nc|ENSG00000154175|Q7Z7G0-4|ABI3BP;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ENSG00000154175|ENST00000471714|ABI3BP ENST00000497021.1_1_3:100471523-100484734:-|nuORF ENST00000497021.1_1_3:100471523-100484734:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 759.4376831054688 2 759.435004 1516.85546 3.0659 0.0023284 -0.82001 -0.00062274 2.2459 0.0017056 759.4358662022623 97.164 1.3912 97.157 96.772 98.164 -0.007019 226 51 6 0 0 0 0.7453 2 53826 53826;54258 0 0 1 110140000 81084 6303 54356 55489 94269;94270 94269 0.11770151099040049 YVKSAKKL 8 Unmodified _YVKSAKKL_ 0 0 0 REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L MSMS AL20221201_MKP_PDAC_01 4 468.7972717285156 2 468.797478 935.580402 NaN NaN NaN NaN NaN NaN NaN 106.77 1 100.59 100.09 101.09 -6.1757 0 0 0 0.97444 1 71451 71451 0.79363 0 1 + 81085 19342 54357 55490 94271 94271 0.11003538690886217 YVKSTKLVLKG 11 Unmodified _YVKSTKLVLKG_ 0 0 0 ENSG00000109536|ENST00000226798|FRG1;ENST00000524583.5_1_4:190862056-190863091:+|nuORF ENSG00000109536|ENST00000226798|FRG1 ENSG00000109536|ENST00000226798|FRG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3899536132812 2 618.389731 1234.76491 1.3875 0.000858 -0.97362 -0.00060208 0.41386 0.00025593 618.389390287895 104.62 0.12039 98.449 98.376 98.497 -6.1757 14 5 3 0 0 0 0.7453 1 70055 70055 0 0 1 38527000 81086 2656 54358 55491 94272 94272 0.15691682050760392 YVKVIYKY 8 Unmodified _YVKVIYKY_ 0 0 0 ENST00000480440.5_1_1:86847891-86851212:-|nuORF ENST00000480440.5_1_1:86847891-86851212:-|nuORF ENST00000480440.5_1_1:86847891-86851212:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.3135375976562 2 538.312961 1074.61137 0.28467 0.00015324 1.3469 0.00072505 1.6316 0.00087829 538.3133374432001 93.657 0.41903 93.2 92.957 93.376 -0.45741 45 18 3 0 0 0 0.80232 1 51209 51209 5.2307 0 1 924120 81087 14057 54359 55492 94273 94273 0.07704692005131619 YVKVIYKYIS 10 Unmodified _YVKVIYKYIS_ 0 0 0 ENST00000480440.5_1_1:86847891-86851212:-|nuORF ENST00000480440.5_1_1:86847891-86851212:-|nuORF ENST00000480440.5_1_1:86847891-86851212:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 426.2506103515625 3 425.91643 1274.72746 0.62407 0.0002658 -0.29928 -0.00012747 0.32479 0.00013834 425.91635517929757 72.673 0.23178 72.197 72.063 72.295 -0.47588 17 10 2 0 0 0 0.71981 1 39757 39757 0.69767 0.19171 1 1182300 81088 14057 54360 55493 94274 94274 0.10108590785193883 YVKVREPHS 9 Unmodified _YVKVREPHS_ 0 0 0 REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant REV__FLNC|p.D2389Rfs*2|1|0.13|ENSG00000128591|chr7:128855227-128855228|-/A|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 557.8040771484375 2 557.803823 1113.59309 NaN NaN NaN NaN NaN NaN NaN 15.964 1 15.969 15.469 16.469 0.0050564 0 0 0 0.85737 1 7981 7981 0.6015 0 1 + 81089 19619 54361 55494 94275 94275 0.040839500831452824 YVKVYPAPTS 10 Unmodified _YVKVYPAPTS_ 0 0 0 REV__nc|ENSG00000079841|Q86UR5-8|RIMS1 REV__nc|ENSG00000079841|Q86UR5-8|RIMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 375.5398254394531 3 375.53773 1123.59136 NaN NaN NaN NaN NaN NaN NaN 32.574 1 32.604 32.104 33.104 0.029743 0 0 0 0.99091 1 17107 17107 0.69767 0 1 + 81090 17656 54362 55495 94276 94276 0.03450896274512161 YVLFYFLNC 9 Unmodified _YVLFYFLNC_ 0 0 0 ENST00000560776.1_1_15:59961053-59961500:-|nuORF ENST00000560776.1_1_15:59961053-59961500:-|nuORF ENST00000560776.1_1_15:59961053-59961500:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 591.28759765625 2 591.288628 1180.5627 0.33991 0.00020099 -0.27989 -0.0001655 0.060021 3.549E-05 591.2887875452392 72.941 0.32689 72.941 72.799 73.126 0 25 14 3 0 0 0 0.39863 1 40604 40604 12.532 0 1 485780 81091 15314 54363 55496 94277 94277 -0.020355446262556143 YVLGPFFLI 9 Unmodified _YVLGPFFLI_ 0 0 0 ENST00000463083.1_2_6:34215242-34215568:-|nuORF;ENST00000495581.1_1_6:34215352-34215568:-|nuORF;ENSG00000186577|ENST00000476320|SMIM29 ENST00000463083.1_2_6:34215242-34215568:-|nuORF ENST00000463083.1_2_6:34215242-34215568:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.8087158203125 2 534.810054 1067.60555 0.35718 0.00019102 -1.7733 -0.00094838 -1.4161 -0.00075736 534.8089639378682 93.155 0.35737 92.698 92.599 92.957 -0.4574 36 15 3 0 0 0 0.46577 1 51009 51009 9.3474 0 1 929910 81092 9485 54364 55497 94278 94278 0.07445593493457636 YVLGVRYLT 9 Unmodified _YVLGVRYLT_ 0 0 0 ENSG00000141096|ENST00000268793|DPEP3 ENSG00000141096|ENST00000268793|DPEP3 ENSG00000141096|ENST00000268793|DPEP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.3138427734375 2 542.313492 1082.61243 0.51026 0.00027672 -1.3859 -0.0007516 -0.87565 -0.00047487 542.3133280665593 50.823 0.37738 50.77 50.608 50.986 -0.053871 57 18 4 0 0 0 0.10734 1 27488 27488 32.305 0 1 12844000 81093 5300 54365 55498 94279 94279 0.07442906374035374 YVLHIGTIY 9 Unmodified _YVLHIGTIY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7999267578125 2 539.800217 1077.58588 -0.038299 -2.0674E-05 -0.40707 -0.00021973 -0.44536 -0.00024041 539.7997025807257 66.183 0.27164 65.7 65.586 65.858 -0.48323 19 15 2 0 0 0 0.023761 1 36141 36141 59.795 27.678 1 4258300 81094 1569 54366 55499 94280 94280 0.050192174827316194 YVLHIGTIY 9 Unmodified _YVLHIGTIY_ 0 0 0 ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1 ENSG00000090861|ENST00000261772|AARS1 ENSG00000090861|ENST00000261772|AARS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 540.3026733398438 2 539.800217 1077.58588 0.81957 0.0004424 -0.3198 -0.00017263 0.49977 0.00026978 539.7999041119178 65.708 0.30164 65.708 65.562 65.863 7.6294E-06 32 14 3 0 0 0 0.016494 1 36004 36004 67.035 36.811 1 12640000 81095 1569 54366 55499 94281 94281 0.050192174827316194 YVLHKVSSL 9 Unmodified _YVLHKVSSL_ 0 0 0 REV__ENST00000400286.2_1_13:86373305-86373452:-|nuORF REV__ENST00000400286.2_1_13:86373305-86373452:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 523.3035888671875 2 523.305667 1044.59678 NaN NaN NaN NaN NaN NaN NaN 75.848 1 75.896 75.396 76.396 0.047943 0 0 0 0.43505 1 41838 41838 18.135 6.4947 1 + 81096 26595 54367 55500 94282 94282 0.0762661985700106 YVLKLLKL 8 Unmodified _YVLKLLKL_ 0 0 0 ENSG00000128578|ENST00000249344|STRIP2;nc|ENSG00000128578|Q9ULQ0-2|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 ENSG00000128578|ENST00000249344|STRIP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 495.3392028808594 2 495.341521 988.668489 -0.42757 -0.0002118 -2.5452 -0.0012608 -2.9728 -0.0014726 495.33993773669573 106.02 0.18624 105.97 105.89 106.07 -0.048103 17 8 3 0 0 0 0.81107 1 58766 58766 0 0 1 5639800 81097 4070 54368 55501 94283 94283 0.17370159281495035 YVLKLLKV 8 Unmodified _YVLKLLKV_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MSMS AL20221201_MKP_PDAC_01 4 488.3323669433594 2 488.333696 974.652839 NaN NaN NaN NaN NaN NaN NaN 107.18 1 101 100.5 101.5 -6.1757 0 0 0 0.97444 1 71705 71705 0 0 1 81098 5461 54369 55502 94284 94284 0.16449872764451356 YVLKLLKV 8 Unmodified _YVLKLLKV_ 0 0 0 ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;nc|ENSG00000143093|Q5VSL9-2|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 ENSG00000143093|ENST00000369795|STRIP1 MSMS AL20221201_MKP_PDAC_01 4 488.3315124511719 2 488.333696 974.652839 NaN NaN NaN NaN NaN NaN NaN 107.54 1 101.36 100.86 101.86 -6.1757 0 0 0 0.97444 1 71920 71920 0 0 1 81099 5461 54369 55502 94285 94285 0.16449872764451356 YVLKLRPPD 9 Unmodified _YVLKLRPPD_ 0 0 0 nc|ENSG00000289758|Q92902-4|HPS1 nc|ENSG00000289758|Q92902-4|HPS1 nc|ENSG00000289758|Q92902-4|HPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 367.5535583496094 3 367.553603 1099.63898 NaN NaN NaN NaN NaN NaN NaN 20.553 1 20.581 20.081 21.081 0.028357 0 0 0 0.84737 1 10406 10406 0.96228 0 1 81100 16630 54370 55503 94286 94286 0.09314595265368553 YVLLKALAL 9 Unmodified _YVLLKALAL_ 0 0 0 ENSG00000173153|ENST00000000442|ESRRA;nc|ENSG00000173153|P11474-2|ESRRA;ENST00000400596.2_1_13:20134155-20134623:-|nuORF ENSG00000173153|ENST00000000442|ESRRA ENSG00000173153|ENST00000000442|ESRRA MULTI-MSMS AL20221201_MKP_PDAC_01 4 502.3317260742188 2 502.331153 1002.64775 1.5583 0.00078281 -0.82069 -0.00041226 0.73765 0.00037055 502.330542569665 98.336 0.10381 92.16 92.102 92.206 -6.1757 9 6 2 0 0 0 0.031062 1 65230 65230 54.774 30.1 1 10164000 81101 8291 54371 55504 94287 94287 0.14653568901837843 YVLLWHRY 8 Unmodified _YVLLWHRY_ 0 0 0 REV__nc|ENSG00000100084|P54198-2|HIRA REV__nc|ENSG00000100084|P54198-2|HIRA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.3192749023438 2 575.313826 1148.6131 NaN NaN NaN NaN NaN NaN NaN 84.562 1 84.063 83.563 84.563 -0.49961 0 0 0 0.97444 1 46274 46274 2.8892 0 1 + 81102 18011 54372 55505 94288 94288 0.04473745813743335 YVLNSPYSF 9 Unmodified _YVLNSPYSF_ 0 0 0 REV__ENSG00000182816|ENST00000399889|KRTAP13-2 REV__ENSG00000182816|ENST00000399889|KRTAP13-2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 545.2672729492188 2 545.266207 1088.51786 0.22453 0.00012243 0.91848 0.00050082 1.143 0.00062325 545.2669561269773 84.784 0.34702 84.784 84.542 84.889 0 27 16 2 0 0 0 0.53666 2 46927 46927;47030 5.2307 0 1 734220 + 81103 23297 54373 55506 94289;94290 94289 -0.02285652167961416 YVLNSPYSF 9 Unmodified _YVLNSPYSF_ 0 0 0 REV__ENSG00000182816|ENST00000399889|KRTAP13-2 REV__ENSG00000182816|ENST00000399889|KRTAP13-2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 545.266207 1088.51786 0.22453 0.00012243 0.91848 0.00050082 1.143 0.00062325 545.2669561269773 84.784 0.34702 84.784 84.542 84.889 0 0 0 NaN 5.2307 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 734220 + 81104 23297 54373 55506 -0.02285652167961416 YVLPGNKYL 9 Unmodified _YVLPGNKYL_ 0 0 0 nc|ENSG00000042781|O75445-3|USH2A;ENSG00000042781|ENST00000307340|USH2A nc|ENSG00000042781|O75445-3|USH2A nc|ENSG00000042781|O75445-3|USH2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 534.3047485351562 2 533.800217 1065.58588 -0.013459 -7.1843E-06 -2.1092 -0.0011259 -2.1227 -0.0011331 533.7990693935837 51.239 0.41162 50.825 50.557 50.969 -0.41351 61 20 4 0 0 0 0.2001 1 27511 27511 23.148 0.41214 1 27508000 81105 665 54374 55507 94291 94291 0.055712174827021954 YVLQELVE 8 Unmodified _YVLQELVE_ 0 0 0 nc|ENSG00000038382|O75962-2|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF nc|ENSG00000038382|O75962-2|TRIO nc|ENSG00000038382|O75962-2|TRIO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 993.52294921875 1 992.529889 991.522613 0.046451 4.6104E-05 -0.72922 -0.00072377 -0.68277 -0.00067767 992.5288023822783 56.819 0.50235 56.819 56.609 57.111 0 52 21 4 0 0 0 0.80044 1 31770 31770 6.3541 0 1 13270000 81106 636 54375 55508 94292 94292 0.02651231974800794 YVLQSVNL 8 Unmodified _YVLQSVNL_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2633666992188 2 468.263468 934.512382 0.23856 0.00011171 0.033941 1.5893E-05 0.2725 0.0001276 468.26344742285045 58.518 0.23164 58.028 57.921 58.153 -0.49079 17 10 2 0 0 0 0.5953 1 31848 31848 26.341 1.6674 1 1044400 + 81107 17104 54376 55509 94293 94293 0.04250669040231969 YVLQSVNL 8 Unmodified _YVLQSVNL_ 0 0 0 REV__nc|ENSG00000019991|P14210-3|HGF REV__nc|ENSG00000019991|P14210-3|HGF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 468.263468 934.512382 0.23856 0.00011171 0.033941 1.5893E-05 0.2725 0.0001276 468.26344742285045 58.518 0.23164 58.028 57.921 58.153 -0.49079 0 0 NaN 26.341 17 10 2 NaN NaN NaN NaN 0 NaN NaN 0 1044400 + 81108 17104 54376 55509 0.04250669040231969 YVLRSKELL 9 Unmodified _YVLRSKELL_ 0 0 0 REV__nc|ENSG00000066933|B2RTY4-5|MYO9A REV__nc|ENSG00000066933|B2RTY4-5|MYO9A MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1803894042969 3 374.229008 1119.66519 1.2309 0.00046065 2.2127 0.00082805 3.4436 0.0012887 374.2299023086808 43.528 0.20994 38.764 38.709 38.919 -4.7648 15 12 2 0 0 0 0.21144 1 26449 26449 4.1895 0 1 8736600 + 81109 17411 54377 55510 94294 94294 0.11014864436833705 YVLTRPCWS 9 Unmodified _YVLTRPCWS_ 0 0 0 nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 562.7823486328125 2 562.781502 1123.54845 1.3646 0.00076798 -0.73984 -0.00041637 0.62477 0.00035161 562.7813263883037 64.135 0.34188 64.124 63.976 64.318 -0.010529 40 16 3 0 0 0 0.23158 1 35119 35119 20.454 4.6064 1 9369900 81110 5802 54378 55511 94295 94295 -0.008381970545542572 YVLTRPCWS 9 Unmodified _YVLTRPCWS_ 0 0 0 nc|ENSG00000146839|Q9Y493-5|ZAN;nc|ENSG00000146839|Q9Y493-4|ZAN;nc|ENSG00000146839|Q9Y493-3|ZAN;nc|ENSG00000146839|Q9Y493-6|ZAN;nc|ENSG00000146839|Q9Y493-2|ZAN;ENSG00000146839|ENST00000613979|ZAN;nc|ENSG00000146839|Q9Y493-7|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN nc|ENSG00000146839|Q9Y493-5|ZAN MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 562.781502 1123.54845 1.3646 0.00076798 -0.73984 -0.00041637 0.62477 0.00035161 562.7813263883037 64.135 0.34188 64.124 63.976 64.318 -0.010529 -0.00074289 5.1395E-05 NaN 20.454 40 16 3 NaN NaN NaN NaN 0 NaN NaN 0 9369900 81111 5802 54378 55511 -0.008381970545542572 YVLYASALY 9 Unmodified _YVLYASALY_ 0 0 0 ENST00000575310.1_1_17:7324913-7346173:+|nuORF;ENST00000575331.1_1_17:7344773-7346173:+|nuORF;ENSG00000161958|ENST00000293829|FGF11 ENST00000575310.1_1_17:7324913-7346173:+|nuORF ENST00000575310.1_1_17:7324913-7346173:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 531.7817993164062 2 531.778951 1061.54335 NaN NaN NaN NaN NaN NaN NaN 41.669 1 41.669 41.169 42.169 0 0 0 0 0.43505 1 22501 22501 18.135 1.1927 1 81112 6821 54379 55512 94296 94296 0.015038223544706852 YVMEKGRQ 8 Unmodified _YVMEKGRQ_ 0 0 0 ENSG00000130957|ENST00000375337|FBP2 ENSG00000130957|ENST00000375337|FBP2 ENSG00000130957|ENST00000375337|FBP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 505.7826843261719 2 505.758027 1009.5015 -0.98883 -0.00050011 2.5598 0.0012947 1.571 0.00079455 506.2599762787124 78.161 0.21135 77.679 77.591 77.803 -0.4826 16 8 3 0 0 0 8.7369 1 42829 42829 9.3474 0 1 616140 81113 4282 54380 55513 94297 94297 -0.0028705660569130487 YVMGIVHG 8 Unmodified _YVMGIVHG_ 0 0 0 ENSG00000187257|ENST00000334955|RSBN1L;nc|ENSG00000187257|Q6PCB5-2|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L ENSG00000187257|ENST00000334955|RSBN1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 438.2254638671875 2 438.225831 874.437109 NaN NaN NaN NaN NaN NaN NaN 14.405 1 14.374 13.874 14.874 -0.030868 0 0 0 0.97444 1 7005 7005 0.79363 0 1 81114 9549 54381 55514 94298 94298 -0.005132116918389329 YVMGNNPAD 9 Unmodified _YVMGNNPAD_ 0 0 0 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 ENSG00000134760|ENST00000257192|DSG1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 490.7116394042969 2 490.710742 979.406931 0.031421 1.5418E-05 1.534 0.00075274 1.5654 0.00076816 490.7114568777004 35.735 0.26145 35.735 35.574 35.836 0 19 12 2 0 0 0 0.46501 1 18910 18910 9.3831 0.78985 1 2128400 81115 4637 54382 55515 94299 94299 -0.08359615147696786 YVMKVLPRR 9 Unmodified _YVMKVLPRR_ 0 0 0 REV__ENST00000478668.1_1_1:168014424-168033024:+|nuORF REV__ENST00000478668.1_1_1:168014424-168033024:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.3504028320312 2 581.349886 1160.68522 NaN NaN NaN NaN NaN NaN NaN 88.511 1 88.006 87.506 88.506 -0.50423 0 0 0 0.85737 1 48408 48408 0.6015 0 1 + 81116 20610 54383 55516 94300 94300 0.11130336895826076 YVMRTTTTI 9 Unmodified _YVMRTTTTI_ 0 0 0 REV__ENSG00000151150|ENST00000280772|ANK3 REV__ENSG00000151150|ENST00000280772|ANK3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2876586914062 2 543.286617 1084.55868 1.0763 0.00058473 0.066573 3.6168E-05 1.1429 0.0006209 543.2866621437377 47.358 0.60162 42.277 42.003 42.605 -5.0805 118 38 5 0 0 0 0.013041 1 29556 29556 71.922 11.848 1 273970000 + 81117 21053 54384 55517 94301 94301 0.019783658800179182 YVMSFAFCFD 10 Unmodified _YVMSFAFCFD_ 0 0 0 ENSG00000186094|ENST00000371839|AGBL4;nc|ENSG00000186094|Q5VU57-2|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 ENSG00000186094|ENST00000371839|AGBL4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 410.5056762695312 3 410.505044 1228.4933 0.22321 9.1629E-05 0.64344 0.00026413 0.86665 0.00035576 410.50584463750016 66.665 0.28897 66.182 65.946 66.235 -0.48323 28 13 3 0 0 0 0.70951 1 36362 36362 0.77653 0.27058 1 1579000 81118 9450 54385 55518 94302 94302 -0.11180371637351527 YVNALLIHI 9 Unmodified _YVNALLIHI_ 0 0 0 REV__nc|ENSG00000181109|Q8NH57|OR52P1 REV__nc|ENSG00000181109|Q8NH57|OR52P1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.5471801757812 3 352.546449 1054.61752 NaN NaN NaN NaN NaN NaN NaN 38.4 1 38.417 37.917 38.917 0.01704 0 0 0 0.85261 1 20419 20419 1.1933 0 1 + 81119 29825 54386 55519 94303 94303 0.09239210236660256 YVNDIMKVHR 10 Unmodified _YVNDIMKVHR_ 0 0 0 REV__nc|ENSG00000147852|P98155-2|VLDLR REV__nc|ENSG00000147852|P98155-2|VLDLR MSMS AL20221201_MKP_PDAC_01 4 425.5603637695312 3 425.560652 1273.66013 NaN NaN NaN NaN NaN NaN NaN 25.246 1 22.363 21.863 22.863 -2.8831 0 0 0 0.73897 1 13808 13808 14.957 5.1929 1 + 81120 20914 54387 55520 94304 94304 0.034242373025790585 YVNELYWKF 9 Unmodified _YVNELYWKF_ 0 0 0 REV__ENSG00000143641|ENST00000366672|GALNT2 REV__ENSG00000143641|ENST00000366672|GALNT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 631.3133544921875 2 631.316232 1260.61791 -1.0244 -0.00064669 -1.1039 -0.0006969 -2.1282 -0.0013436 631.3158746715419 77.636 0.30091 77.153 77.032 77.333 -0.4826 29 13 3 0 0 0 0.43463 1 42485 42485 10.824 2.0785 1 2169200 + 81121 20658 54388 55521 94305 94305 -0.0019741483417874406 YVNETLRHME 10 Unmodified _YVNETLRHME_ 0 0 0 REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2 REV__nc|ENSG00000175866|Q9UQB8-3|BAIAP2 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3123168945312 2 646.308612 1290.60267 0.018074 1.1681E-05 0.98914 0.00063929 1.0072 0.00065097 646.3096516383698 61.7 0.14534 61.212 61.118 61.263 -0.48764 10 6 2 0 0 0 0.23634 1 33567 33567 6.7232 0.51738 1 1573800 + 81122 22896 54389 55522 94306 94306 -0.031006496936470285 YVNGFTHWI 9 Unmodified _YVNGFTHWI_ 0 0 0 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 ENSG00000181143|ENST00000397910|MUC16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 568.7797241210938 2 568.779816 1135.54508 NaN NaN NaN NaN NaN NaN NaN 20.285 1 20.313 19.813 20.813 0.028357 0 0 0 0.81961 1 10262 10262 4.756 0 1 81123 8954 54390 55523 94307 94307 -0.01727123836917599 YVNKEYKKL 9 Unmodified _YVNKEYKKL_ 0 0 0 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 REV__nc|ENSG00000144674|Q13439-3|GOLGA4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 395.22265625 3 395.560646 1183.66011 -0.17015 -6.7305E-05 2.8745 0.0011371 2.7044 0.0010697 395.5619586976458 32.978 0.10954 33.008 32.957 33.067 0.029743 6 4 2 0 0 0 0.21473 1 17325 17325 0.20686 0 1 739210 + 81124 20725 54391 55524 94308 94308 0.07562560574228883 YVNKLALVF 9 Unmodified _YVNKLALVF_ 0 0 0 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 ENSG00000113504|ENST00000264930|SLC12A7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 533.8179321289062 2 533.81841 1065.62227 0.24011 0.00012818 -0.080696 -4.3077E-05 0.15942 8.5099E-05 533.8177602815481 72.168 0.16219 72.207 72.171 72.333 0.039024 10 7 2 0 0 0 0.078417 2 39751 39729;39751 38.151 17.28 1 2319400 81125 2971 54392 55525 94309;94310 94310 0.09208094379414433 YVNSWWDQI 9 Unmodified _YVNSWWDQI_ 0 0 0 MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.7786865234375 2 605.780013 1209.54547 0.10788 6.5352E-05 -2.2247 -0.0013477 -2.1168 -0.0012823 605.778774106129 31.654 0.26816 31.525 31.354 31.623 -0.12915 22 10 3 0 0 0 0.095405 1 16442 16442 34.102 10.954 1 3276300 81126 15990 54393 55526 94311 94311 -0.050917489077164646 YVNSWWDQI 9 Unmodified _YVNSWWDQI_ 0 0 0 MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MEP1A|p.I178S|1|0.17|ENSG00000112818|chr6:46819681-46819681|T/G|missense_variant MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 605.780013 1209.54547 -0.43 -0.00026049 -3.0414 -0.0018424 -3.4714 -0.0021029 605.7781070096144 31.713 0.25735 31.713 31.541 31.799 0 0.09431 -0.000511 NaN 34.102 27 12 3 NaN NaN NaN NaN 0 NaN NaN 0 2060600 81127 15990 54393 55526 -0.050917489077164646 YVNTYGRIT 9 Unmodified _YVNTYGRIT_ 0 0 0 nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;TNIK|p.L1327Yfs*24|1|0.14|ENSG00000154310|chr3:171066207-171066207|G/-|frameshift_variant;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000154310|Q9UKE5-8|TNIK nc|ENSG00000071054|O95819-4|MAP4K4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 543.7828369140625 2 543.782556 1085.55056 -0.49578 -0.0002696 1.098 0.00059709 0.60225 0.00032749 543.7831853493594 31.973 0.18311 31.973 31.88 32.063 0 12 8 2 0 0 0 0.51218 1 16685 16685 6.7232 0 1 893710 81128 1049;6319 54394 55527 94312 94312 0.01120554954900399 YVNVFTISSCC 11 Unmodified _YVNVFTISSCC_ 0 0 0 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 REV__nc|ENSG00000112053|Q96RN1-3|SLC26A8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.2752685546875 2 618.275392 1234.53623 0.54361 0.0003361 -1.7833 -0.0011026 -1.2397 -0.00076646 618.2742335692038 63.824 0.30073 63.339 63.172 63.473 -0.48512 28 16 2 0 0 0 0.56638 1 34775 34775 13.042 4.2971 1 6654100 + 81129 18783 54395 55528 94313 94313 -0.0716560157989079 YVPADPAQLA 10 Unmodified _YVPADPAQLA_ 0 0 0 nc|ENSG00000154040|O75952-4|CABYR;nc|ENSG00000154040|O75952-5|CABYR;ENSG00000154040|ENST00000399496|CABYR;nc|ENSG00000154040|O75952-2|CABYR;nc|ENSG00000154040|O75952|CABYR nc|ENSG00000154040|O75952-4|CABYR nc|ENSG00000154040|O75952-4|CABYR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7899169921875 2 522.771657 1043.52876 0.35114 0.00018357 0.60705 0.00031735 0.95819 0.00050091 522.772373137514 89.875 0.36962 89.373 89.217 89.586 -0.50171 28 19 2 0 0 0 0.6966 1 49075 49075 3.2813 0.39209 1 687920 81130 6291 54396 55529 94314 94314 0.008737502063240754 YVPDQLIRQ 9 Unmodified _YVPDQLIRQ_ 0 0 0 REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF REV__ENST00000492449.5_1_3:184603882-184769810:+|nuORF MSMS AL20221201_MKP_PDAC_01 4 377.8787841796875 3 377.876746 1130.60841 NaN NaN NaN NaN NaN NaN NaN 16.642 1 14.085 13.585 14.585 -2.557 0 0 0 0.81228 1 8636 8636 3.5871 0 1 + 81131 21354 54397 55530 94315 94315 0.04832816880320934 YVPEHWEY 8 Unmodified _YVPEHWEY_ 0 0 0 ENST00000488002.5_1_3:179322588-179334847:+|nuORF;ENSG00000136521|ENST00000259037|NDUFB5;nc|ENSG00000136521|O43674-2|NDUFB5;ENST00000359944.10_1_3:179322640-179341825:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF ENST00000488002.5_1_3:179322588-179334847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 374.83447265625 3 374.834547 1121.48181 -1.158 -0.00043404 1.2197 0.0004572 0.061772 2.3154E-05 374.8349064899369 32.632 0.20123 32.632 32.532 32.733 0 27 10 3 0 0 0 0.80624 1 17055 17055 1.8442 0.6509 1 8134700 81132 4830 54398 55531 94316 94316 -0.07407109344808305 YVPFLCFR 8 Unmodified _YVPFLCFR_ 0 0 0 REV__ENST00000395003.5_2_5:133917397-133917673:+|nuORF REV__ENST00000395003.5_2_5:133917397-133917673:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 522.7725219726562 2 522.770406 1043.52626 0.35114 0.00018357 3.0005 0.0015686 3.3516 0.0017521 522.772373137514 89.875 0.36962 89.373 89.217 89.586 -0.50171 28 19 2 0 0 0 0.80232 1 49208 49208 5.2307 0.90143 1 687920 + 81133 26464 54399 55532 94317 94317 0.006236232676656073 YVPFSVSCQY 10 Unmodified _YVPFSVSCQY_ 0 0 0 REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant REV__MUC5AC|p.E4699Gfs*90|1|0.21|ENSG00000215182|chr11:1192239-1192240|-/G|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.2965087890625 2 596.7708 1191.52705 0.80474 0.00048024 -1.5321 -0.00091432 -0.72737 -0.00043408 596.770117183033 75.285 0.45882 74.808 74.538 74.997 -0.47714 71 23 5 0 0 0 0.6606 1 41096 41096 7.2892 2.5332 1 25976000 + 81134 29474 54400 55533 94318 94318 -0.061056268739093866 YVPGYKFQFG 10 Unmodified _YVPGYKFQFG_ 0 0 0 ENSG00000215187|ENST00000399742|FAM166B ENSG00000215187|ENST00000399742|FAM166B ENSG00000215187|ENST00000399742|FAM166B MULTI-MSMS AL20221201_MKP_PDAC_01 4 402.5381164550781 3 402.537842 1204.5917 1.0886 0.00043819 -0.70658 -0.00028443 0.382 0.00015377 402.8719448257722 35.011 0.42638 30.916 30.632 31.058 -4.0951 39 24 2 0 0 0 0.67033 1 20163 20163 3.3196 0 1 12908000 81135 10524 54401 55534 94319 94319 -0.0024168400561848102 YVPHSPFH 8 Unmodified _YVPHSPFH_ 0 0 0 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.7418212890625 2 492.240327 982.466101 0.011043 5.436E-06 -0.30162 -0.00014847 -0.29058 -0.00014303 492.2398924960171 32.497 0.30557 32.368 32.176 32.481 -0.12915 18 13 2 0 0 0 0.19755 1 16895 16895 70.865 36.677 1 2626400 81136 4638 54402 55535 94320 94320 -0.02583351071200468 YVPHSPFH 8 Unmodified _YVPHSPFH_ 0 0 0 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 ENSG00000134775|ENST00000590592|FHOD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 492.2405700683594 2 492.240327 982.466101 -0.20089 -9.8885E-05 0.60418 0.0002974 0.40329 0.00019852 492.2403819607018 35.388 0.22301 35.165 35.045 35.268 -0.2224 23 9 3 0 0 0 0.19755 1 18526 18526 70.865 36.677 1 4458100 81137 4638 54402 55535 94321 94321 -0.02583351071200468 YVPILDKHV 9 Unmodified _YVPILDKHV_ 0 0 0 VWA3B|p.V879I|1|0.15|ENSG00000168658|chr2:98236692-98236692|G/A|missense_variant VWA3B|p.V879I|1|0.15|ENSG00000168658|chr2:98236692-98236692|G/A|missense_variant VWA3B|p.V879I|1|0.15|ENSG00000168658|chr2:98236692-98236692|G/A|missense_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 361.87841796875 3 361.878087 1082.61243 NaN NaN NaN NaN NaN NaN NaN 37.755 1 37.772 37.272 38.272 0.01704 0 0 0 0.6557 1 20057 20057 7.1017 2.2047 1 81138 30208 54403 55536 94322 94322 0.07442906374035374 YVPLITASYV 10 Unmodified _YVPLITASYV_ 0 0 0 ENSG00000181698|ENST00000641665|OR5T1;ENSG00000172489|ENST00000313033|OR5T3;nc|ENSG00000172489|Q8NGG3|OR5T3 ENSG00000181698|ENST00000641665|OR5T1 ENSG00000181698|ENST00000641665|OR5T1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 375.8778381347656 3 375.877864 1124.61176 NaN NaN NaN NaN NaN NaN NaN 18.129 1 18.143 17.643 18.643 0.013865 0 0 0 1.0061 1 9066 9066 0 0 1 81139 8989 54404 55537 94323 94323 0.05444066934296643 YVPLLPAP 8 Unmodified _YVPLLPAP_ 0 0 0 REV__ENSG00000131067|ENST00000336431|GGT7 REV__ENSG00000131067|ENST00000336431|GGT7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 435.261962890625 2 435.260197 868.50584 1.2781 0.00055629 3.334 0.0014511 4.612 0.0020074 435.26113451541073 100.37 0.19598 94.194 94.058 94.254 -6.1757 23 12 2 0 0 0 0.80624 1 67080 67080 2.8892 0.31174 1 36478000 + 81140 19767 54405 55538 94324 94324 0.0663277587950688 YVPLRMCHRC 10 Unmodified _YVPLRMCHRC_ 0 0 0 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 ENSG00000166068|ENST00000299084|SPRED1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 426.1936950683594 3 426.540317 1276.59912 0.47816 0.00020395 -2.0924 -0.0008925 -1.6143 -0.00068854 426.5396693881873 52.075 0.23082 52.016 51.917 52.148 -0.058918 17 10 2 0 0 0 0.23922 1 28151 28151 3.8763 0 1 4914200 81141 7429 54406 55539 94325 94325 -0.028113142728443563 YVPMAAGSW 9 Unmodified _YVPMAAGSW_ 0 0 0 ENSG00000277556|ENST00000374779|OR13C5;ENSG00000276119|ENST00000542196|OR13C2 ENSG00000277556|ENST00000374779|OR13C5 ENSG00000277556|ENST00000374779|OR13C5 MSMS AL20221201_MKP_PDAC_01 4 491.2286682128906 2 491.228571 980.442588 NaN NaN NaN NaN NaN NaN NaN 91.192 1 85.017 84.517 85.517 -6.1757 0 0 0 0.57317 1 60274 60274 13.508 2.3934 1 81142 10916 54407 55540 94326 94326 -0.04841532900036327 YVPNGSFEW 9 Unmodified _YVPNGSFEW_ 0 0 0 REV__ENSG00000196730|ENST00000408954|DAPK1 REV__ENSG00000196730|ENST00000408954|DAPK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 549.7482299804688 2 549.748182 1097.48181 0.60342 0.00033173 1.4464 0.00079513 2.0498 0.0011269 549.7491408049352 49.021 0.48698 43.625 43.337 43.824 -5.3961 102 31 4 0 0 0 0.28023 1 30440 30440 18.146 0.011366 1 348700000 + 81143 23865 54408 55541 94327 94327 -0.0630310934479894 YVPQNYVPQ 9 Unmodified _YVPQNYVPQ_ 0 0 0 REV__ENST00000469266.1_1_3:146246325-146262351:-|nuORF REV__ENST00000469266.1_1_3:146246325-146262351:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.267578125 2 554.277106 1106.53966 0.3559 0.00019727 0.5359 0.00029704 0.89181 0.00049431 554.2774532901378 55.746 0.35263 55.268 55.069 55.422 -0.47798 50 16 4 0 0 0 0.49272 1 30159 30159 7.9102 0 1 30091000 + 81144 23703 54409 55542 94328 94328 -0.009348474193984657 YVQCGAYGFK 10 Unmodified _YVQCGAYGFK_ 0 0 0 REV__ENSG00000180245|ENST00000317735|RRH REV__ENSG00000180245|ENST00000317735|RRH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.2657470703125 2 568.265684 1134.51682 0.19478 0.00011069 0.19809 0.00011257 0.39288 0.00022326 568.2658854896148 44.266 0.15775 44.244 44.188 44.346 -0.022064 14 7 2 0 0 0 0.24625 1 23751 23751 30.637 8.8899 1 13194000 + 81145 23145 54410 55543 94329 94329 -0.045061898085123175 YVQHRLRELGS 11 Unmodified _YVQHRLRELGS_ 0 0 0 nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 nc|ENSG00000188566|Q9UHB4-3|NDOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 453.2495727539062 3 453.249354 1356.72623 1.1933 0.00054086 -0.39906 -0.00018087 0.79424 0.00035999 453.24843412126614 95.076 0.51648 88.901 88.748 89.264 -6.1757 35 28 2 0 0 0 0.71728 1 62938 62938 2.6312 0.54523 1 9775000 81146 9670 54411 55544 94330 94330 0.06213769468990904 YVQHYTAQV 9 Unmodified _YVQHYTAQV_ 0 0 0 REV__nc|ENSG00000152430|Q8N9W6-5|BOLL REV__nc|ENSG00000152430|Q8N9W6-5|BOLL MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.7727661132812 2 554.774731 1107.53491 NaN NaN NaN NaN NaN NaN NaN 35.707 1 35.731 35.231 36.231 0.024967 0 0 0 0.7818 1 18889 18889 6.7232 0.99131 1 + 81147 21118 54412 55545 94331 94331 -0.014557315621459566 YVQQQSAFQ 9 Unmodified _YVQQQSAFQ_ 0 0 0 REV__ENSG00000129250|ENST00000320785|KIF1C REV__ENSG00000129250|ENST00000320785|KIF1C MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 550.7640380859375 2 549.764363 1097.51417 0.86117 0.00047344 -1.0509 -0.00057773 -0.18971 -0.00010429 549.7638642136507 46.4 0.39664 46.4 46.21 46.607 0 64 18 5 0 0 0 0.43515 1 25317 25317 15.847 7.937 1 24262000 + 81148 19658 54413 55546 94332 94332 -0.030683219418278895 YVQVCVQN 8 Unmodified _YVQVCVQN_ 0 0 0 ENSG00000160218|ENST00000291574|TRAPPC10;ENST00000469521.5_1_21:45509650-45516542:+|nuORF;ENST00000483973.5_1_21:45509395-45516542:+|nuORF ENSG00000160218|ENST00000291574|TRAPPC10 ENSG00000160218|ENST00000291574|TRAPPC10 MSMS AL20221201_MKP_PDAC_01 4 476.7329406738281 2 476.731477 951.448402 NaN NaN NaN NaN NaN NaN NaN 90.576 1 84.401 83.901 84.901 -6.1757 0 0 0 0.77249 1 59838 59838 24.674 6.5389 1 81149 6704 54414 55547 94333 94333 -0.029264343883596666 YVRACMKYGF 10 Unmodified _YVRACMKYGF_ 0 0 0 REV__nc|ENSG00000131323|Q13114-2|TRAF3 REV__nc|ENSG00000131323|Q13114-2|TRAF3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 619.345458984375 2 619.296462 1236.57837 2.3487 0.0014545 -3.289 -0.0020369 -0.94036 -0.00058236 619.2941147527384 95.166 0.2625 95.17 95.03 95.292 0.004158 16 9 2 0 0 0 0.23862 1 52817 52817 3.9444 0.94915 1 1189100 + 81150 19782 54415 55548 94334 94334 -0.03045581380888507 YVRAVLHL 8 Unmodified _YVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 485.7960510253906 2 485.795269 969.575986 -0.036311 -1.764E-05 0.18084 8.7851E-05 0.14453 7.0211E-05 485.79543847213887 53.477 0.19362 53.414 53.306 53.499 -0.063423 17 9 3 0 0 0 0.073316 1 29008 29008 120.86 49.992 1 5862400 81151 734 54416 55549 94335 94335 0.08998074267992706 YVRAVLHL 8 Unmodified _YVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 485.7959594726562 2 485.795269 969.575986 NaN NaN NaN NaN NaN NaN NaN 83.683 1 77.507 77.007 78.007 -6.1757 0 0 0 3.2477E-15 1 55038 55038 152.78 61.949 1 81152 734 54416 55549 94336 94336 0.08998074267992706 YVRCRRCESM 10 Unmodified _YVRCRRCESM_ 0 0 0 nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 nc|ENSG00000002745|Q9UBV4-2|WNT16 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 651.7965698242188 2 651.796834 1301.57912 NaN NaN NaN NaN NaN NaN NaN 25.614 1 25.614 25.114 26.114 0 0 0 0 0.99008 1 13138 13138 1.4819 0 1 81153 264 54417 55550 94337 94337 -0.05961110003477188 YVREYAVGCL 10 Unmodified _YVREYAVGCL_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB;ENST00000481749.5_1_3:138374233-138426144:-|nuORF ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7960815429688 2 586.792066 1171.56958 NaN NaN NaN NaN NaN NaN NaN 55.108 1 54.63 54.13 55.13 -0.47798 0 0 0 0.64375 1 29885 29885 19.257 1.1106 1 81154 733 54418 55551 94338 94338 -0.009342317456912497 YVRFCLDCI 9 Unmodified _YVRFCLDCI_ 0 0 0 REV__nc|ENSG00000015171|Q15326-6|ZMYND11 REV__nc|ENSG00000015171|Q15326-6|ZMYND11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.2730712890625 2 566.269912 1130.52527 NaN NaN NaN NaN NaN NaN NaN 79.821 1 79.331 78.831 79.831 -0.48932 0 0 0 0.7243 1 43721 43721 8.5933 1.8701 1 + 81155 17085 54419 55552 94339 94339 -0.03476959163549509 YVRGTKGHY 9 Unmodified _YVRGTKGHY_ 0 0 0 REV__ENST00000495378.1_1_11:77580004-77580085:-|nuORF REV__ENST00000495378.1_1_11:77580004-77580085:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 540.7825317382812 2 540.78289 1079.55123 0.16523 8.9356E-05 -0.63068 -0.00034106 -0.46545 -0.00025171 540.7818192092732 52.979 0.25003 52.527 52.381 52.631 -0.45173 26 12 3 0 0 0 0.49272 1 28673 28673 7.9102 0.62092 1 1090600 + 81156 19325 54420 55553 94340 94340 0.014633943946137151 YVRLFSDCMA 10 Unmodified _YVRLFSDCMA_ 0 0 0 REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 402.1885375976562 3 402.187827 1203.54165 0.65055 0.00026164 -0.32256 -0.00012973 0.32799 0.00013191 402.1879383774509 64.452 0.36856 63.967 63.779 64.147 -0.48512 67 16 5 0 0 0 0.48505 1 35118 35118 14.957 4.1577 1 36473000 + 81157 29368 54421 55554 94341 94341 -0.051978779974433564 YVRLFSDCMA 10 Unmodified _YVRLFSDCMA_ 0 0 0 REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense REV__HERVIP10F-int_dup53|chr3:5691578-5694652:-|1.7447202029841695|0.3446240251625713|2.34|166.0|1|1|sense MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 402.1884765625 3 402.187827 1203.54165 0.81226 0.00032668 -0.6982 -0.00028081 0.11406 4.5875E-05 402.1877905347205 63.956 0.27366 63.946 63.803 64.077 -0.010532 45 13 4 0 0 0 0.57893 1 34973 34973 10.899 3.7972 1 10748000 + 81158 29368 54421 55554 94342 94342 -0.051978779974433564 YVRLTYTM 8 Unmodified _YVRLTYTM_ 0 0 0 REV__nc|ENSG00000163531|O94856|NFASC REV__nc|ENSG00000163531|O94856|NFASC MSMS AL20221201_MKP_PDAC_01 4 523.7689819335938 2 523.770603 1045.52665 NaN NaN NaN NaN NaN NaN NaN 36.33 1 32.137 31.637 32.637 -4.1928 0 0 0 0.65904 1 21203 21203 30.225 7.4885 1 + 81159 21780 54422 55555 94343 94343 0.005709981968720967 YVRQLSQAL 9 Unmodified _YVRQLSQAL_ 0 0 0 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant;nc|ENSG00000203485|Q27J81-2|INF2;ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-3|INF2 INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant INF2|p.L1064Ffs*26|1|0.22|ENSG00000203485|chr14:104714351-104714352|-/T|frameshift_variant MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.30517578125 2 539.306198 1076.59784 NaN NaN NaN NaN NaN NaN NaN 39.872 1 39.574 39.074 40.074 -0.29716 0 0 0 0.22437 1 21052 21052 29.082 14.243 1 81160 10217 54423 55556 94344 94344 0.06260834225895451 YVRQPNSLL 9 Unmodified _YVRQPNSLL_ 0 0 0 REV__ENSG00000168676|ENST00000304372|KCTD19 REV__ENSG00000168676|ENST00000304372|KCTD19 MULTI-MSMS AL20221201_MKP_PDAC_01 4 363.8743896484375 3 363.873224 1088.59784 1.2111 0.0004407 0.84012 0.0003057 2.0513 0.0007464 363.8736674912158 31.625 0.3651 27.929 27.757 28.122 -3.6958 32 19 2 0 0 0 0.39863 1 18002 18002 8.1555 1.0538 1 51848000 + 81161 22333 54424 55557 94345 94345 0.057088342259021374 YVRRETEEVF 10 Unmodified _YVRRETEEVF_ 0 0 0 ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 ENSG00000158055|ENST00000361548|GRHL3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 664.334716796875 2 664.335684 1326.65681 0.79956 0.00053117 -0.65033 -0.00043204 0.14923 9.9139E-05 664.3352926536784 55.248 0.31743 49.327 49.157 49.474 -5.9211 32 19 2 0 0 0 0.16688 1 35127 35127 36.506 1.5741 1 19441000 81162 6563 54425 55558 94346 94346 0.006552657295515019 YVRRLERK 8 Unmodified _YVRRLERK_ 0 0 0 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 ENSG00000213380|ENST00000306875|COG8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 560.33984375 2 560.340907 1118.66726 0.37536 0.00021033 -0.053602 -3.0035E-05 0.32176 0.00018029 560.340619337762 94.645 0.33046 94.645 94.456 94.786 0 68 29 3 0 0 0 0.81107 1 52236 52236 0 0 1 847660 81163 10431 54426 55559 94347 94347 0.11267337965296065 YVRRWSRWFRK 11 Unmodified _YVRRWSRWFRK_ 0 0 0 REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 820.4577026367188 2 820.457668 1638.90078 NaN NaN NaN NaN NaN NaN NaN 51.2 1 45.551 45.051 46.051 -5.649 0 0 0 0.94184 1 32200 32200 1.1933 0.88631 1 + 81164 27748 54427 55560 94348 94348 0.1068881440480709 YVRYWFTC 8 Unmodified _YVRYWFTC_ 0 0 0 ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C ENSG00000221886|ENST00000408953|FAM200C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 380.1799926757812 3 379.844389 1136.51134 NaN NaN NaN NaN NaN NaN NaN 28.067 1 28.067 27.567 28.567 0 0 0 0 0.97444 1 14483 14483 1.8442 0.6509 1 81165 10556 54428 55561 94349 94349 -0.05145868600311587 YVSAAAAA 8 Unmodified _YVSAAAAA_ 0 0 0 ENST00000310421.4_1_8:67579140-67579239:-|nuORF REV__nc|ENSG00000239306|Q96PK6-5|RBM14 REV__nc|ENSG00000239306|Q96PK6-5|RBM14 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 361.88232421875 2 362.187229 722.359904 1.4803 0.00053615 -0.80215 -0.00029053 0.67816 0.00024562 362.1868673158181 42.365 0.44582 37.68 37.423 37.869 -4.6846 51 29 2 0 0 0 8.7369 1 25626 25626 2.8892 2.0956 1 32572000 81166 29961 54429 55562 94350 94350 -0.012381066365378501 YVSDKKKDM 9 Unmodified _YVSDKKKDM_ 0 0 0 ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;nc|ENSG00000115504|Q8NDI1|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 ENSG00000115504|ENST00000431489|EHBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2837524414062 2 557.284074 1112.5536 -0.10502 -5.8528E-05 -1.5805 -0.00088079 -1.6855 -0.00093931 557.2834949402757 36.891 0.19226 36.641 36.604 36.796 -0.2497 13 8 2 0 0 0 0.49272 1 19424 19424 7.9102 0 1 2156800 81167 3129 54430 55563 94351 94351 0.0018206201739303651 YVSEACVELF 10 Unmodified _YVSEACVELF_ 0 0 0 ENST00000449777.5_1_2:32417423-32422825:+|nuORF ENST00000449777.5_1_2:32417423-32422825:+|nuORF ENST00000449777.5_1_2:32417423-32422825:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2702026367188 2 580.270632 1158.52671 0.076423 4.4346E-05 -1.2651 -0.0007341 -1.1887 -0.00068976 580.2695588770955 76.46 0.34275 75.981 75.787 76.13 -0.47945 46 21 3 0 0 0 0.31022 2 41818 41818;41923 26.884 6.43 1 4956400 81168 13506 54431 55564 94352;94353 94352 -0.04621046593797473 YVSEACVELF 10 Unmodified _YVSEACVELF_ 0 0 0 ENST00000449777.5_1_2:32417423-32422825:+|nuORF ENST00000449777.5_1_2:32417423-32422825:+|nuORF ENST00000449777.5_1_2:32417423-32422825:+|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 580.270632 1158.52671 0.60056 0.00034849 -1.2036 -0.00069844 -0.60308 -0.00034995 580.2700368768028 75.957 0.22052 76.005 75.888 76.109 0.047951 0.012131 3.16E-05 NaN 26.884 18 9 3 NaN NaN NaN NaN 0 NaN NaN 0 1944200 81169 13506 54431 55564 -0.04621046593797473 YVSEQNFFVL 10 Unmodified _YVSEQNFFVL_ 0 0 0 REV__ENST00000409853.5_1_11:72696108-72700042:-|nuORF REV__ENST00000409853.5_1_11:72696108-72700042:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 623.3115234375 2 623.311146 1244.60774 -0.10756 -6.7041E-05 0.85005 0.00052985 0.7425 0.00046281 623.3116278418219 61.509 0.40285 61.02 60.818 61.221 -0.48932 66 18 5 0 0 0 0.36277 1 33540 33540 27.629 27.629 1 53691000 + 81170 26702 54432 55565 94354 94354 -0.0047802255940041505 YVSGGEMFTHL 11 Unmodified _YVSGGEMFTHL_ 0 0 0 nc|ENSG00000162302|O75676-2|RPS6KA4;ENSG00000162302|ENST00000334205|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 nc|ENSG00000162302|O75676-2|RPS6KA4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 620.7857055664062 2 620.786981 1239.55941 NaN NaN NaN NaN NaN NaN NaN 29.855 1 29.855 29.355 30.355 0 0 0 0 0.92234 1 15488 15488 6.2058 2.6093 1 81171 6846 54433 55566 94355 94355 -0.05078839470911589 YVSHNLLLE 9 Unmodified _YVSHNLLLE_ 0 0 0 REV__ENSG00000072315|ENST00000262839|TRPC5 REV__ENSG00000072315|ENST00000262839|TRPC5 MSMS AL20221201_MKP_PDAC_01 4 544.294677734375 2 544.292756 1086.57096 NaN NaN NaN NaN NaN NaN NaN 60.607 1 54.459 53.959 54.959 -6.1478 0 0 0 0.39043 1 39004 39004 20.454 0 1 + 81172 17514 54434 55567 94356 94356 0.031137256147076187 YVSIINVTF 9 Unmodified _YVSIINVTF_ 0 0 0 REV__ENSG00000065320|ENST00000173229|NTN1 REV__ENSG00000065320|ENST00000173229|NTN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 528.2929077148438 2 528.292225 1054.5699 0.7837 0.00041402 1.6211 0.0008564 2.4048 0.0012704 528.2933024721845 71.549 0.27861 71.588 71.427 71.706 0.039024 19 12 2 0 0 0 0.23158 1 39425 39425 20.454 4.6064 1 1683300 + 81173 17373 54435 55568 94357 94357 0.044795112457904906 YVSKKSKHEEE 11 Unmodified _YVSKKSKHEEE_ 0 0 0 ENSG00000134480|ENST00000256897|CCNH ENSG00000134480|ENST00000256897|CCNH ENSG00000134480|ENST00000256897|CCNH MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 682.3463134765625 2 682.346249 1362.67794 NaN NaN NaN NaN NaN NaN NaN 100.85 1 100.72 100.22 101.22 -0.13293 0 0 0 0.9435 1 55047 55047 0 0 1 81174 4612 54436 55569 94358 94358 0.011112310384760349 YVSMGQGQEVH 11 Unmodified _YVSMGQGQEVH_ 0 0 0 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 ENSG00000039139|ENST00000265104|DNAH5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.1858825683594 3 412.188884 1233.54482 -0.67217 -0.00027706 -3.1981 -0.0013182 -3.8703 -0.0015953 412.187548444493 15.903 0.028111 15.903 15.879 15.907 0 8 6 2 0 0 0 0.73237 1 7705 7705 1.2148 0.20126 1 321170 81175 641 54437 55570 94359 94359 -0.06260911619051512 YVSPLCYI 8 Unmodified _YVSPLCYI_ 0 0 0 ENSG00000188694|ENST00000340345|KRTAP24-1;KRTAP24-1|p.S197R|1|0.23|ENSG00000188694|chr21:30282342-30282342|G/T|missense_variant ENSG00000188694|ENST00000340345|KRTAP24-1 ENSG00000188694|ENST00000340345|KRTAP24-1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 479.2403564453125 2 479.241147 956.46774 NaN NaN NaN NaN NaN NaN NaN 65.513 1 65.513 65.013 66.013 0 0 0 0 0.97444 1 36541 36541 5.2307 0 1 81176 9685 54438 55571 94360 94360 -0.012234780974608839 YVSQSNDGAR 10 Unmodified _YVSQSNDGAR_ 0 0 0 REV__nc|ENSG00000033327|Q9UQC2-2|GAB2 REV__nc|ENSG00000033327|Q9UQC2-2|GAB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 548.7536010742188 2 548.754527 1095.4945 0.3764 0.00020655 0.019014 1.0434E-05 0.39542 0.00021699 548.7543180368172 39.541 0.29759 39.541 39.341 39.639 0 23 13 2 0 0 0 0.56348 1 21196 21196 13.042 2.9685 1 3011900 + 81177 17156 54439 55572 94361 94361 -0.0494269795258333 YVSRPSHF 8 Unmodified _YVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7523498535156 2 496.751059 991.487565 0.5754 0.00028583 -0.18537 -9.2082E-05 0.39003 0.00019375 496.75081603550484 28.29 0.24752 28.235 28.079 28.326 -0.055128 26 9 3 0 0 0 0.054591 1 14559 14559 139.14 75.576 1 25298000 81178 8006 54440 55573 94362 94362 -0.00851966042478125 YVSRPSHF 8 Unmodified _YVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 496.7508850097656 2 496.751059 991.487565 NaN NaN NaN NaN NaN NaN NaN 28.4 1 28.338 27.838 28.838 -0.062159 0 0 0 0.59568 1 14661 14661 34.402 9.7278 1 81179 8006 54440 55573 94363 94363 -0.00851966042478125 YVSRPSHF 8 Unmodified _YVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 496.7515258789062 2 496.751059 991.487565 0.31536 0.00015666 0.66295 0.00032932 0.97832 0.00048598 496.75134409168317 28.194 0.33975 28.224 28.037 28.377 0.029564 28 13 3 0 0 0 0.08919 1 14643 14643 103.35 67.226 1 15350000 81180 8006 54440 55573 94364 94364 -0.00851966042478125 YVSRPSHF 8 Unmodified _YVSRPSHF_ 0 0 0 nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF nc|ENSG00000170581|P52630-4|STAT2 nc|ENSG00000170581|P52630-4|STAT2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 496.7517395019531 2 496.751059 991.487565 0.62271 0.00030933 -0.36591 -0.00018177 0.2568 0.00012757 496.75091175843744 31.697 0.45012 28.001 27.776 28.226 -3.6958 63 24 3 0 0 0 0.063507 2 17883 17883;18007 126.57 72.99 1 216610000 81181 8006 54440 55573 94365;94366 94365 -0.00851966042478125 YVSSLALA 8 Unmodified _YVSSLALA_ 0 0 0 ENST00000422436.5_1_2:163027491-163054158:-|nuORF;ENST00000480044.5_1_2:163027491-163031488:-|nuORF;nc|ENSG00000078098|Q12884-2|FAP;ENSG00000078098|ENST00000188790|FAP ENST00000422436.5_1_2:163027491-163054158:-|nuORF;ENSG00000078098|ENST00000188790|FAP ENSG00000078098|ENST00000188790|FAP MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 412.1878662109375 2 412.231636 822.448719 -0.40953 -0.00016882 -2.3543 -0.0009705 -2.7638 -0.0011393 412.2306085123702 22.534 0.18875 22.534 22.423 22.611 0 10 8 2 0 0 0 8.7369 1 11478 11478 2.8892 0 1 688810 81182 13117;1236 54441 55574 94367 94367 0.030393086031267558 YVTEKAWNY 9 Unmodified _YVTEKAWNY_ 0 0 0 nc|ENSG00000154217|Q9UKF7-2|PITPNC1;ENSG00000154217|ENST00000581322|PITPNC1;ENST00000581923.5_1_17:65529052-65574345:+|nuORF nc|ENSG00000154217|Q9UKF7-2|PITPNC1 nc|ENSG00000154217|Q9UKF7-2|PITPNC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 391.8576049804688 3 391.857351 1172.55022 0.017745 6.9536E-06 1.594 0.0006246 1.6117 0.00063156 391.8580859701356 37.884 0.25874 37.612 37.422 37.681 -0.27133 17 12 2 0 0 0 0.48152 1 19907 19907 5.2969 2.3016 1 3880000 81183 6305 54442 55575 94368 94368 -0.029148647649662962 YVTFDGLAFTY 11 Unmodified _YVTFDGLAFTY_ 0 0 0 nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP nc|ENSG00000197558|A2VEC9|SSPOP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8749694824219 3 432.876411 1295.6074 0.031799 1.3765E-05 1.2994 0.00056249 1.3312 0.00057625 432.87689207476205 32.496 0.40095 32.526 32.341 32.742 0.029747 48 15 5 0 0 0 0.65108 1 17039 17039 4.4062 0 1 35885000 81184 16488 54443 55576 94369 94369 -0.028574422792416954 YVTFDGLYYS 10 Unmodified _YVTFDGLYYS_ 0 0 0 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 nc|ENSG00000198788|Q02817|MUC2 MSMS AL20221201_MKP_PDAC_01 4 614.286376953125 2 614.282054 1226.54956 NaN NaN NaN NaN NaN NaN NaN 55.387 1 49.466 48.966 49.966 -5.9211 0 0 0 0.51756 1 35254 35254 25.399 0 1 81185 16496 54444 55577 94370 94370 -0.05465704204675603 YVTFPVRQPR 10 Unmodified _YVTFPVRQPR_ 0 0 0 ENSG00000102007|ENST00000376327|PLP2 ENSG00000102007|ENST00000376327|PLP2 ENSG00000102007|ENST00000376327|PLP2 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 421.2507019042969 3 421.571657 1261.69314 1.5534 0.00065488 0.37451 0.00015788 1.9279 0.00081276 421.57180957329325 41.946 0.26751 37.261 37.097 37.364 -4.6846 23 16 2 0 0 0 0.23426 1 25182 25182 10.899 1.9227 1 8532300 81186 2009 54445 55578 94371 94371 0.07276187416937319 YVTFQLFESY 10 Unmodified _YVTFQLFESY_ 0 0 0 REV__ENST00000480282.5_2_3:111847241-111847490:+|nuORF REV__ENST00000480282.5_2_3:111847241-111847490:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.8766784667969 3 432.876411 1295.6074 1.4315 0.00061966 -0.28984 -0.00012547 1.1416 0.00049419 432.87628416711885 35.943 0.52163 31.75 31.474 31.996 -4.1928 111 32 4 0 0 0 0.54684 1 21045 21045 8.4443 1.8209 1 80525000 + 81187 27670 54446 55579 94372 94372 -0.02857442279218958 YVTGKFLDNF 10 Unmodified _YVTGKFLDNF_ 0 0 0 REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3051147460938 2 602.305864 1202.59717 NaN NaN NaN NaN NaN NaN NaN 62.513 1 62.026 61.526 62.526 -0.48764 0 0 0 0.88176 1 34065 34065 8.7454 1.4562 1 + 81188 29301 54447 55580 94373 94373 0.0039799478618078865 YVTGKFLDNF 10 Unmodified _YVTGKFLDNF_ 0 0 0 REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3035278320312 2 602.305864 1202.59717 0.17072 0.00010283 -3.5083 -0.0021131 -3.3376 -0.0020102 602.3041717981529 60.045 0.093975 59.991 59.958 60.052 -0.053059 6 4 2 0 0 0 0.64628 1 32754 32754 8.7454 0 1 3023700 + 81189 29301 54447 55580 94374 94374 0.0039799478618078865 YVTGKFLDNF 10 Unmodified _YVTGKFLDNF_ 0 0 0 REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.305419921875 2 602.305864 1202.59717 0.68597 0.00041316 -0.60066 -0.00036178 0.085309 5.1382E-05 602.3054557141859 64.417 0.29588 64.406 64.232 64.528 -0.010529 25 14 2 0 0 0 0.043225 1 35280 35280 61.602 26.67 1 6015600 + 81190 29301 54447 55580 94375 94375 0.0039799478618078865 YVTGKFLDNF 10 Unmodified _YVTGKFLDNF_ 0 0 0 REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF REV__ENST00000606895.1_1_17:62206241-62206379:-|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 602.305864 1202.59717 0.68597 0.00041316 -0.60066 -0.00036178 0.085309 5.1382E-05 602.3054557141859 64.417 0.29588 64.406 64.232 64.528 -0.010529 -0.012452 0.00077194 NaN 61.602 25 14 2 NaN NaN NaN NaN 0 NaN NaN 0 6015600 + 81191 29301 54447 55580 0.0039799478618078865 YVTKSKTFK 9 Unmodified _YVTKSKTFK_ 0 0 0 REV__ENSG00000134001|ENST00000256383|EIF2S1 REV__ENSG00000134001|ENST00000256383|EIF2S1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 368.215087890625 3 367.881608 1100.623 -0.025876 -9.5193E-06 -1.919 -0.00070597 -1.9449 -0.00071549 368.2145932243293 33.307 0.35732 33.336 33.185 33.543 0.028934 46 15 4 0 0 0 0.4887 1 17507 17507 8.1555 0 1 8104500 + 81192 19945 54448 55581 94376 94376 0.07670889028463534 YVTQKWDPF 9 Unmodified _YVTQKWDPF_ 0 0 0 nc|ENSG00000231213|A0PG75-2|PLSCR5;ENSG00000231213|ENST00000443512|PLSCR5 nc|ENSG00000231213|A0PG75-2|PLSCR5 nc|ENSG00000231213|A0PG75-2|PLSCR5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.2920532226562 2 592.292756 1182.57096 0.52994 0.00031388 -2.1637 -0.0012816 -1.6338 -0.00096768 592.2910788079079 63.882 0.23362 63.397 63.319 63.553 -0.48512 20 13 2 0 0 0 0.28023 1 34853 34853 18.146 2.2992 1 3285800 81193 10616 54449 55582 94377 94377 -0.013022743853071006 YVTRVSIESVE 11 Unmodified _YVTRVSIESVE_ 0 0 0 REV__ENST00000514603.1_1_4:145040770-145061788:-|nuORF REV__ENST00000514603.1_1_4:145040770-145061788:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 428.2141418457031 3 427.894354 1280.66123 NaN NaN NaN NaN NaN NaN NaN 18.521 1 18.521 18.021 19.021 0 0 0 0 0.9435 1 9214 9214 0 0 1 + 81194 22452 54450 55583 94378 94378 0.03212730152426957 YVTRYDQL 8 Unmodified _YVTRYDQL_ 0 0 0 REV__ENST00000514092.5_1_5:88673161-88761545:+|nuORF REV__ENST00000514092.5_1_5:88673161-88761545:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 352.8467102050781 3 353.181946 1056.52401 NaN NaN NaN NaN NaN NaN NaN 29.356 1 29.386 28.886 29.886 0.030106 0 0 0 0.88449 1 15314 15314 19.257 5.3509 1 + 81195 28189 54451 55584 94379 94379 -0.001991339364394662 YVTVCSFHVNK 11 Unmodified _YVTVCSFHVNK_ 0 0 0 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.8862915039062 3 432.885024 1295.63324 NaN NaN NaN NaN NaN NaN NaN 32.707 1 32.737 32.237 33.237 0.029743 0 0 0 0.94165 1 17180 17180 1.3296 0.55311 1 + 81196 23056 54452 55585 94380 94380 -0.0027487130862482445 YVTVDEFMVL 10 Unmodified _YVTVDEFMVL_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.3021850585938 2 608.301933 1214.58931 0.3991 0.00024277 -0.18454 -0.00011225 0.21457 0.00013052 608.3018907784096 95.646 0.53749 95.278 95.038 95.575 -0.36815 109 30 5 0 0 0 0.20195 1 52243 52243 48.346 0 1 18638000 + 81197 22578 54453 55586 94381 94381 -0.009399005256000237 YVTVDEFMVL 10 Unmodified _YVTVDEFMVL_ 0 0 0 REV__ENSG00000171574|ENST00000306910|ZNF584 REV__ENSG00000171574|ENST00000306910|ZNF584 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 608.3030395507812 2 608.301933 1214.58931 2.2159 0.0013479 -0.16499 -0.00010036 2.0509 0.0012476 608.3018518945638 95.188 0.43201 95.192 94.972 95.404 0.0041504 47 15 4 0 0 0 0.38225 1 52968 52968 34.102 5.6156 1 9500100 + 81198 22578 54453 55586 94382 94382 -0.009399005256000237 YVTVKQCLQP 10 Unmodified _YVTVKQCLQP_ 0 0 0 ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF ENST00000564397.5_1_16:5075481-5078139:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 394.2152099609375 3 393.54612 1177.61653 -0.009101 -3.5816E-06 0.39668 0.00015611 0.38758 0.00015253 393.546202134724 37.779 0.63609 37.779 37.493 38.129 0 73 31 3 0 0 0 0.69064 1 20265 20265 1.9064 0.71303 1 26466000 81199 15383 54454 55587 94383 94383 0.03482627805442462 YVTWFFWFWND 11 Unmodified _YVTWFFWFWND_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.8599243164062 2 805.858795 1609.70304 0.12564 0.00010125 1.4157 0.0011408 1.5413 0.0012421 805.8598108151643 83.917 0.28667 83.417 83.241 83.528 -0.49961 27 11 3 0 0 0 0.74203 1 45917 45917 0.30703 0.03801 1 1070100 81200 9520 54455 55588 94384 94384 -0.07742669368349198 YVTWFFWFWND 11 Unmodified _YVTWFFWFWND_ 0 0 0 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 ENSG00000186908|ENST00000426126|ZDHHC17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 805.8605346679688 2 805.858795 1609.70304 0.11537 9.2971E-05 1.1752 0.00094708 1.2906 0.0010401 805.859320443007 84.803 0.39342 84.304 84.114 84.507 -0.49961 44 16 3 0 0 0 0.74203 1 46459 46459 0.30703 0.30703 1 1499800 81201 9520 54455 55588 94385 94385 -0.07742669368349198 YVTYEDEPM 9 Unmodified _YVTYEDEPM_ 0 0 0 REV__ENSG00000109072|ENST00000226218|VTN REV__ENSG00000109072|ENST00000226218|VTN MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 574.239501953125 2 573.736622 1145.45869 0.8847 0.00050759 0.75977 0.00043591 1.6445 0.00094349 573.7370805749359 74.97 0.37153 74.492 74.324 74.696 -0.47714 64 15 6 0 0 0 0.21367 1 40983 40983 2.0598 0 1 9681500 + 81202 18641 54456 55589 94386 94386 -0.1082191624443567 YVTYYLII 8 Unmodified _YVTYYLII_ 0 0 0 REV__ENSG00000139304|ENST00000644991|PTPRQ REV__ENSG00000139304|ENST00000644991|PTPRQ MULTI-SECPEP AL20221201_MKP_PDAC_01 4 524.3329467773438 2 524.291694 1046.56883 0.76801 0.00040266 -0.93745 -0.0004915 -0.16944 -8.8837E-05 524.2912277702743 99.157 0.22452 92.981 92.841 93.066 -6.1757 20 12 2 0 0 0 8.7369 1 65823 65823 19.439 6.9074 1 33261000 + 81203 20399 54457 55590 94387 94387 0.04741296876909473 YVVAFSDEMV 10 Unmodified _YVVAFSDEMV_ 0 0 0 nc|ENSG00000116747|P10155-3|RO60;nc|ENSG00000116747|P10155-5|RO60;nc|ENSG00000116747|P10155-4|RO60;ENSG00000116747|ENST00000400968|RO60 nc|ENSG00000116747|P10155-3|RO60 nc|ENSG00000116747|P10155-3|RO60 MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2708740234375 2 580.270632 1158.52671 1.0033 0.00058216 -1.3215 -0.00076685 -0.31829 -0.0001847 580.2697544704436 54.921 0.28401 49.056 48.929 49.213 -5.8653 23 17 2 0 0 0 0.2829 1 34876 34876 28.487 6.7402 1 11200000 81204 3250 54458 55591 94388 94388 -0.04621046593797473 YVVDKLCG 8 Unmodified _YVVDKLCG_ 0 0 0 REV__ENSG00000110076|ENST00000265459|NRXN2 REV__ENSG00000110076|ENST00000265459|NRXN2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 896.4526977539062 1 896.454616 895.447339 0.12463 0.00011172 -0.52783 -0.00047317 -0.4032 -0.00036145 896.4508360037445 52.717 0.22313 52.717 52.596 52.82 0 15 9 2 0 0 0 0.17994 1 29169 29169 77.984 10.64 1 1873800 + 81205 18689 54459 55592 94389 94389 -0.004566487572674305 YVVDLDDEY 9 Unmodified _YVVDLDDEY_ 0 0 0 ENSG00000113141|ENST00000417647|IK ENSG00000113141|ENST00000417647|IK ENSG00000113141|ENST00000417647|IK MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 565.7479248046875 2 565.748044 1129.48154 0.58184 0.00032918 -1.8124 -0.0010254 -1.2306 -0.00069619 565.7472058081881 57.674 0.6197 57.674 57.371 57.99 0 55 28 3 0 0 0 0.28047 2 32061 32061;32164 18.135 3.2967 1 16755000 81206 2943 54460 55593 94390;94391 94390 -0.07802573855337869 YVVDNLEI 8 Unmodified _YVVDNLEI_ 0 0 0 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 482.7518005371094 2 482.752933 963.491313 NaN NaN NaN NaN NaN NaN NaN 89.563 1 89.563 89.063 90.063 0 0 0 0 0.97444 1 49555 49555 0.79363 0 1 + 81207 21677 54461 55594 94392 94392 0.008106589407020692 YVVFVLLL 8 Unmodified _YVVFVLLL_ 0 0 0 ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6 ENST00000488743.6_1_2:27425876-27434347:-|nuORF ENST00000488743.6_1_2:27425876-27434347:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 483.3084106445312 2 483.307147 964.599741 NaN NaN NaN NaN NaN NaN NaN 67.12 1 60.945 60.445 61.445 -6.1757 0 0 0 0.94749 1 43705 43705 11.114 0 1 81208 5011 54462 55595 94393 94393 0.1160249498182111 YVVPFVAKV 9 Unmodified _YVVPFVAKV_ 0 0 0 nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1 nc|ENSG00000125107|A5YKK6-2|CNOT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 511.30810546875 2 511.307678 1020.6008 0.61306 0.00031346 -0.68187 -0.00034865 -0.068812 -3.5184E-05 511.30774021157066 67.799 0.30675 67.817 67.628 67.934 0.018028 25 14 3 0 0 0 0.07916 1 37232 37232 37.974 17.52 1 3470600 81209 3829;16172 54463 55596 94394 94394 0.09132709350706136 YVVPPEHGQR 10 Unmodified _YVVPPEHGQR_ 0 0 0 ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F ENSG00000186280|ENST00000335080|KDM4D;ENSG00000255855|ENST00000545950|KDM4F ENSG00000255855|ENST00000545950|KDM4F MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5421142578125 3 394.540245 1180.59891 0.93325 0.00036821 2.7239 0.0010747 3.6572 0.0014429 394.5413112578999 78.032 0.10383 71.856 71.794 71.898 -6.1757 9 5 2 0 0 0 0.63399 1 51068 51068 5.4027 0 1 10062000 81210 10796;9466 54464 55597 94395 94395 0.015830485948072237 YVVRDSQEF 9 Unmodified _YVVRDSQEF_ 0 0 0 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 ENSG00000112297|ENST00000633556|CRYBG1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2991943359375 2 571.77747 1141.54039 0.18589 0.00010629 -1.3747 -0.00078603 -1.1888 -0.00067974 572.2782333067876 69.348 0.11092 68.869 68.79 68.9 -0.47903 8 4 2 0 0 0 0.21242 1 37889 37889 5.2307 0 1 482810 81211 2879 54465 55598 94396 94396 -0.024720527703493644 YVVRGHSL 8 Unmodified _YVVRGHSL_ 0 0 0 REV__ENSG00000197070|ENST00000371421|ARRDC1 REV__ENSG00000197070|ENST00000371421|ARRDC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 465.7617492675781 2 465.761426 929.5083 0.63836 0.00029733 0.62184 0.00028963 1.2602 0.00058695 465.7618150517607 75.528 0.11497 75.051 75.011 75.126 -0.47714 7 5 2 0 0 0 0.80624 1 41356 41356 2.8892 0 1 537530 + 81212 23891 54466 55599 94397 94397 0.040726243371977944 YVVSILIRV 9 Unmodified _YVVSILIRV_ 0 0 0 REV__ENSG00000182631|ENST00000330120|RXFP3 REV__ENSG00000182631|ENST00000330120|RXFP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 354.8592834472656 3 354.562099 1060.66447 0.29416 0.0001043 0.63816 0.00022627 0.93233 0.00033057 354.56237885660164 40.261 0.23177 40.266 40.128 40.36 0.0050545 25 10 3 0 0 0 0.21889 1 21393 21393 0.26902 0 1 4324500 + 81213 23286 54467 55600 94398 94398 0.13656069787816705 YVVVQLTKK 9 Unmodified _YVVVQLTKK_ 0 0 0 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 REV__nc|ENSG00000120549|Q5T5P2-3|KIAA1217 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 539.816162109375 2 539.336967 1076.65938 0.17013 9.1757E-05 -0.008186 -4.415E-06 0.16194 8.7342E-05 539.3365186314365 38.724 0.22295 38.735 38.597 38.82 0.011456 13 10 2 0 0 0 0.20139 1 20579 20579 10.824 0 1 1516000 + 81214 19249 54468 55601 94399 94399 0.12411765925162399 YVVWKSEGDF 10 Unmodified _YVVWKSEGDF_ 0 0 0 ENST00000489330.6_1_X:11166772-11683098:-|nuORF;nc|ENSG00000047648|O43182-2|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6 ENST00000489330.6_1_X:11166772-11683098:-|nuORF ENST00000489330.6_1_X:11166772-11683098:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.2985229492188 2 615.295496 1228.57644 0.55515 0.00034158 0.35742 0.00021992 0.91258 0.00056151 615.2953272473362 92.29 0.6624 91.809 91.525 92.187 -0.48092 73 31 4 0 0 0 0.70951 1 50328 50328 1.8442 0 1 2235900 81215 691 54469 55602 94400 94400 -0.028705955934810845 YVVYHSDNRLH 11 Unmodified _YVVYHSDNRLH_ 0 0 0 REV__ENSG00000138079|ENST00000260649|SLC3A1 REV__ENSG00000138079|ENST00000260649|SLC3A1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 351.1748657226562 4 351.427013 1401.67895 1.1994 0.0004215 -1.6233 -0.00057047 -0.42391 -0.00014897 351.4265617456718 38.471 0.065178 34.102 34.045 34.11 -4.3689 5 3 2 0 0 0 0.30551 1 22677 22677 2.6312 2.0044 1 5062400 + 81216 20299 54470 55603 94401 94401 -0.005825098020295627 YVWFLIGW 8 Unmodified _YVWFLIGW_ 0 0 0 ENST00000472823.5_1_6:29576484-29596894:-|nuORF;nc|ENSG00000204681|Q9UBS5-5|GABBR1;nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;nc|ENSG00000204681|Q9UBS5-4|GABBR1;ENSG00000204681|ENST00000377034|GABBR1 ENST00000472823.5_1_6:29576484-29596894:-|nuORF ENST00000472823.5_1_6:29576484-29596894:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 542.7911987304688 2 542.286746 1082.55894 0.51325 0.00027833 1.395 0.00075649 1.9083 0.0010348 542.7889526956976 46.975 1.1802 41.895 41.393 42.573 -5.0805 286 140 5 0 0 0 0.76859 1 29149 29149 11.114 1.0405 1 171840000 81217 10317 54471 55604 94402 94402 0.020961536622053245 YVWKMYQER 9 Unmodified _YVWKMYQER_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.882568359375 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 27.735 1 27.689 27.189 28.189 -0.046408 0 0 0 0.85737 1 14301 14301 0.26902 0.1097 1 81218 9779;10169;10115 54472 55605 94403 94403 -0.01606853963062349 YVWKMYQER 9 Unmodified _YVWKMYQER_ 0 0 0 nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3 nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198838|Q15413-2|RYR3 nc|ENSG00000196218|P21817-3|RYR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 434.8834228515625 3 434.881502 1301.62268 NaN NaN NaN NaN NaN NaN NaN 28.041 1 27.995 27.495 28.495 -0.046408 0 0 0 0.85737 1 14466 14466 0.26902 0.1097 1 81219 9779;10169;10115 54472 55605 94404 94404 -0.01606853963062349 YVWQGRMSSL 10 Unmodified _YVWQGRMSSL_ 0 0 0 nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL;ENST00000484717.5_1_3:38035793-38043423:+|nuORF nc|ENSG00000136059|O15195-2|VILL nc|ENSG00000136059|O15195-2|VILL MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 409.5372314453125 3 409.537736 1225.59138 -0.3518 -0.00014407 0.79017 0.0003236 0.43837 0.00017953 409.538236473487 30.721 0.3406 30.751 30.585 30.925 0.030106 37 14 3 0 0 0 0.68719 1 16045 16045 2.086 0 1 1573000 81220 4784 54473 55606 94405 94405 -0.012394269971082394 YVYAGILAL 9 Unmodified _YVYAGILAL_ 0 0 0 ENSG00000163870|ENST00000355552|TPRA1;ENST00000465915.1_1_3:127294026-127294397:-|nuORF ENSG00000163870|ENST00000355552|TPRA1 ENSG00000163870|ENST00000355552|TPRA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 491.7824096679688 2 491.784036 981.553519 NaN NaN NaN NaN NaN NaN NaN 76.251 1 76.251 75.751 76.751 0 0 0 0 0.70111 1 42401 42401 9.3474 0 1 81221 7086 54474 55607 94406 94406 0.062004300797070755 YVYDEFLTL 9 Unmodified _YVYDEFLTL_ 0 0 0 REV__ENSG00000123384|ENST00000243077|LRP1 REV__ENSG00000123384|ENST00000243077|LRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.7865600585938 2 581.786973 1161.55939 0.20047 0.00011663 -0.032283 -1.8782E-05 0.16819 9.7851E-05 581.7866199147568 90.437 0.19762 90.437 90.375 90.573 0 18 11 2 0 0 0 0.54444 1 50029 50029 4.756 0 1 516940 + 81222 19385 54475 55608 94407 94407 -0.014925161992778158 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 SSBP3-TBC1D1|1|fusion;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 SSBP3-TBC1D1|1|fusion SSBP3-TBC1D1|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8107299804688 2 599.810782 1197.60701 -0.11597 -6.9558E-05 -0.41631 -0.00024971 -0.53228 -0.00031927 599.8106905866822 76.794 0.37032 76.315 76.13 76.5 -0.47945 36 17 3 0 0 0 0.16776 2 42099 42014;42099 26.341 12.435 1 2228000 81223 5711 54476 55609 94408;94409 94409 0.016111827915665344 YVYEYLLHV 9 Unmodified _YVYEYLLHV_ 0 0 0 SSBP3-TBC1D1|1|fusion;nc|ENSG00000145687|P81877-2|SSBP2;nc|ENSG00000145687|P81877-4|SSBP2;nc|ENSG00000145687|P81877-5|SSBP2;nc|ENSG00000145687|P81877-3|SSBP2;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000145687|P81877|SSBP2;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000145687|ENST00000615665|SSBP2;ENSG00000157216|ENST00000610401|SSBP3 SSBP3-TBC1D1|1|fusion SSBP3-TBC1D1|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8111572265625 2 599.810782 1197.60701 0.34228 0.0002053 0.11952 7.1692E-05 0.46181 0.000277 599.8107767845041 91.622 0.43948 85.446 85.111 85.55 -6.1757 38 23 2 0 0 0 0.027803 1 60550 60550 56.541 33.805 1 9555300 81224 5711 54476 55609 94410 94410 0.016111827915665344 YVYINIYY 8 Unmodified _YVYINIYY_ 0 0 0 REV__ENST00000371730.6_1_1:51820341-51820458:-|nuORF REV__ENST00000371730.6_1_1:51820341-51820458:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 555.77880859375 2 555.778951 1109.54335 NaN NaN NaN NaN NaN NaN NaN 90.127 1 89.626 89.126 90.126 -0.50171 0 0 0 0.97444 1 49268 49268 0.79363 0 1 + 81225 26092 54477 55610 94411 94411 -0.007041776455480431 YVYKYFLL 8 Unmodified _YVYKYFLL_ 0 0 0 REV__nc|ENSG00000183023|P32418-2|SLC8A1 REV__nc|ENSG00000183023|P32418-2|SLC8A1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 554.8085327148438 2 554.807511 1107.60047 NaN NaN NaN NaN NaN NaN NaN 20.166 1 20.176 19.676 20.676 0.010553 0 0 0 0.97444 1 10278 10278 0.79363 0.19213 1 + 81226 29841 54478 55611 94412 94412 0.05097289630839441 YVYPVHWQF 9 Unmodified _YVYPVHWQF_ 0 0 0 nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.802490234375 2 619.803291 1237.59203 0.32072 0.00019878 -0.82107 -0.0005089 -0.50035 -0.00031012 619.8025866743886 69.69 0.28198 69.69 69.557 69.839 0 28 13 3 0 0 0 0.54213 1 38885 38885 7.9102 3.9658 1 1512400 81227 6200 54479 55612 94413 94413 -0.017262642857986066 YVYPVHWQF 9 Unmodified _YVYPVHWQF_ 0 0 0 nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 nc|ENSG00000152583|Q14515-2|SPARCL1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 619.803291 1237.59203 0.15338 9.5063E-05 0.57004 0.00035331 0.72342 0.00044838 619.8037542121249 70.254 0.21529 69.775 69.653 69.869 -0.47903 0.04266 0.0014604 NaN 7.9102 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 843850 81228 6200 54479 55612 -0.017262642857986066 YVYQNEHEV 9 Unmodified _YVYQNEHEV_ 0 0 0 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 ENSG00000198074|ENST00000359579|AKR1B10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 590.7664794921875 2 590.767103 1179.51965 -0.46688 -0.00027582 0.10671 6.3039E-05 -0.36017 -0.00021278 590.767147386014 25.809 0.20721 25.809 25.717 25.924 0 26 9 3 0 0 0 0.011968 1 13230 13230 74.929 53.392 1 7913300 81229 10046 54480 55613 94414 94414 -0.06292643150027288 YVYRNPEDYKR 11 Unmodified _YVYRNPEDYKR_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 501.585205078125 3 501.584402 1501.73138 NaN NaN NaN NaN NaN NaN NaN 21.421 1 21.449 20.949 21.949 0.028357 0 0 0 0.94307 1 10870 10870 0.08335 0 1 81230 7704 54481 55614 94415 94415 0.0005802854093417409 YVYRNPEDYKR 11 Unmodified _YVYRNPEDYKR_ 0 0 0 nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1 nc|ENSG00000168016|O15050|TRANK1 nc|ENSG00000168016|O15050|TRANK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 751.873291015625 2 751.872965 1501.73138 0.8446 0.00063503 -0.17369 -0.00013059 0.67091 0.00050444 752.3741065465082 73.007 1.2134 66.831 66.276 67.489 -6.1757 163 60 3 0 0 0 0.56638 2 47826 47713;47826 13.042 4.8869 1 55206000 81231 7704 54481 55614 94416;94417 94417 0.0005802854093417409 YVYSFTKF 8 Unmodified _YVYSFTKF_ 0 0 0 REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF REV__ENST00000510520.5_1_5:10442060-10472024:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.7785034179688 2 527.765843 1053.51713 -0.20359 -0.00010745 0.72051 0.00038026 0.51692 0.00027281 527.7663471450542 34.944 0.39575 34.944 34.714 35.11 0 46 20 3 0 0 0 0.74163 1 18455 18455 13.508 0 1 9519500 + 81232 28147 54482 55615 94418 94418 -0.0074844681698778 YVYYGKNSEG 10 Unmodified _YVYYGKNSEG_ 0 0 0 ENST00000488759.5_1_10:78163110-78317043:+|nuORF;nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA ENST00000488759.5_1_10:78163110-78317043:+|nuORF ENST00000488759.5_1_10:78163110-78317043:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.2694091796875 2 590.269478 1178.5244 NaN NaN NaN NaN NaN NaN NaN 19.161 1 19.169 18.669 19.669 0.0078487 0 0 0 1.0061 1 9737 9737 0 0 1 81233 5950 54483 55616 94419 94419 -0.0577175900725706 YWAIATVTSNA 11 Unmodified _YWAIATVTSNA_ 0 0 0 REV__nc|ENSG00000152936|Q8N9Z9-4|LMNTD1 REV__nc|ENSG00000152936|Q8N9Z9-4|LMNTD1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.8009643554688 2 598.800946 1195.58734 NaN NaN NaN NaN NaN NaN NaN 16.19 1 16.195 15.695 16.695 0.0050564 0 0 0 0.9435 1 8106 8106 0 0 1 + 81234 29711 54484 55617 94420 94420 -0.00263193219166169 YWALGFHLS 9 Unmodified _YWALGFHLS_ 0 0 0 ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF;nc|ENSG00000257335|O43451-1|MGAM;ENSG00000257335|ENST00000475668|MGAM ENSG00000257743|ENST00000477922|MGAM2 ENSG00000257743|ENST00000477922|MGAM2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 547.2767944335938 2 547.276909 1092.53927 0.72764 0.00039822 -0.13595 -7.4401E-05 0.5917 0.00032382 547.2769111634353 22.142 0.36147 19.407 19.219 19.581 -2.7348 45 19 3 0 0 0 0.30202 1 11830 11830 12.532 0 1 8809800 81235 10814 54485 55618 94421 94421 -0.0033022234856616706 YWARNFVGW 9 Unmodified _YWARNFVGW_ 0 0 0 ENSG00000089163|ENST00000202967|SIRT4 ENSG00000089163|ENST00000202967|SIRT4 ENSG00000089163|ENST00000202967|SIRT4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.7946166992188 2 599.793258 1197.57196 NaN NaN NaN NaN NaN NaN NaN 56.308 1 56.239 55.739 56.739 -0.068737 0 0 0 0.7243 1 30623 30623 8.5933 0.43775 1 81236 1519 54486 55619 94422 94422 -0.018920152257123846 YWCMEYYF 8 Unmodified _YWCMEYYF_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7291870117188 2 602.727546 1203.44054 0.47284 0.00028499 0.53911 0.00032494 1.0119 0.00060993 602.7276967501265 87.534 0.43333 87.03 86.761 87.195 -0.50423 43 19 3 0 0 0 0.80975 2 47798 47798;47894 0.79363 0 1 1003900 + 81237 17830;29521 54487 55620 94423;94424 94423 -0.15304329700165908 YWCMEYYF 8 Unmodified _YWCMEYYF_ 0 0 0 REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__nc|ENSG00000089094|Q8NHM5-5|KDM2B REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7291870117188 2 602.727546 1203.44054 NaN NaN NaN NaN NaN NaN NaN 87.752 1 87.247 86.747 87.747 -0.50423 0 0 0 0.97444 1 47999 47999 0.79363 0 1 + 81238 17830;29521 54487 55620 94425 94425 -0.15304329700165908 YWDNVEAF 8 Unmodified _YWDNVEAF_ 0 0 0 ENST00000504002.1_1_4:70715089-70723308:-|nuORF;ENSG00000109193|ENST00000226444|SULT1E1 ENST00000504002.1_1_4:70715089-70723308:-|nuORF ENST00000504002.1_1_4:70715089-70723308:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 522.2249755859375 2 522.227082 1042.43961 NaN NaN NaN NaN NaN NaN NaN 45.333 1 45.333 44.833 45.833 0 0 0 0 0.97348 1 24705 24705 5.7604 1.0044 1 81239 2641 54488 55621 94426 94426 -0.0799108475318917 YWDNVPAEY 9 Unmodified _YWDNVPAEY_ 0 0 0 nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000519421.1_1_8:101015243-101020719:-|nuORF nc|ENSG00000132554|Q8NE09-3|RGS22 nc|ENSG00000132554|Q8NE09-3|RGS22 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.7518920898438 2 578.750921 1155.48729 NaN NaN NaN NaN NaN NaN NaN 19.817 1 19.817 19.317 20.317 0 0 0 0 0.84564 1 9938 9938 2.0598 0.21551 1 81240 4421 54489 55622 94427 94427 -0.08423430553011713 YWEERIFYLL 10 Unmodified _YWEERIFYLL_ 0 0 0 nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000569891.5_1_16:50783609-50818363:+|nuORF nc|ENSG00000083799|Q9NQC7-2|CYLD nc|ENSG00000083799|Q9NQC7-2|CYLD MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1432.053955078125 1 1431.73071 1430.72344 -0.048967 -7.0107E-05 -2.0271 -0.0029023 -2.0761 -0.0029724 1431.7301500195379 42.605 0.31004 42.299 42.218 42.528 -0.30682 16 13 2 0 0 0 0.72196 1 22592 22592 0.45834 0 1 21921000 81241 1373 54490 55623 94428 94428 0.025305012914714098 YWENKIVRI 9 Unmodified _YWENKIVRI_ 0 0 0 ENSG00000089234|ENST00000419234|BRAP;nc|ENSG00000089234|Q7Z569-2|BRAP ENSG00000089234|ENST00000419234|BRAP ENSG00000089234|ENST00000419234|BRAP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 407.8994445800781 3 407.564391 1219.67134 0.19913 8.1158E-05 0.29682 0.00012097 0.49595 0.00020213 407.56452617399844 49.201 0.2481 49.158 49.027 49.275 -0.04369 35 11 4 0 0 0 0.0082485 1 26560 26560 76.825 47.388 1 5859100 81242 1524 54491 55624 94429 94429 0.07029382668383732 YWEPAEVFL 9 Unmodified _YWEPAEVFL_ 0 0 0 ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 ENSG00000145041|ENST00000684031|DCAF1 MSMS AL20221201_MKP_PDAC_01 4 577.2821655273438 2 577.281857 1152.54916 NaN NaN NaN NaN NaN NaN NaN 100.67 1 94.496 93.996 94.996 -6.1757 0 0 0 0.17247 1 67380 67380 34.102 11.366 1 81243 5664 54492 55625 94430 94430 -0.021010791338540002 YWERYKREWER 11 Unmodified _YWERYKREWER_ 0 0 0 REV__ENSG00000122257|ENST00000319715|RBBP6 REV__ENSG00000122257|ENST00000319715|RBBP6 MSMS AL20221201_MKP_PDAC_01 4 850.9152221679688 2 850.918238 1699.82192 NaN NaN NaN NaN NaN NaN NaN 29.699 1 26.398 25.898 26.898 -3.3016 0 0 0 0.94301 1 16719 16719 0.35063 0.35063 1 + 81244 19336 54493 55626 94431 94431 4.975891897629481E-06 YWERYLET 8 Unmodified _YWERYLET_ 0 0 0 ENST00000503808.5_1_4:57204874-57250274:-|nuORF ENST00000503808.5_1_4:57204874-57250274:-|nuORF ENST00000503808.5_1_4:57204874-57250274:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.776611328125 2 580.274564 1158.53457 -0.26483 -0.00015368 -1.2514 -0.00072615 -1.5162 -0.00087983 580.2738132873338 78.451 0.59281 77.965 77.757 78.349 -0.48596 81 25 5 0 0 0 0.80232 1 43005 43005 5.2307 0.47466 1 17829000 81245 14478 54494 55627 94432 94432 -0.03835151282009974 YWFENTRNGLF 11 Unmodified _YWFENTRNGLF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 723.8436279296875 2 723.843676 1445.6728 0.29068 0.0002104 0.14309 0.00010358 0.43377 0.00031398 723.843779605774 76.551 0.32277 76.599 76.397 76.72 0.047943 42 13 4 0 0 0 4.2801E-06 2 42193 42193;42295 96.936 84.695 1 15799000 81246 5216 54495 55628 94433;94434 94433 -0.03221028033544826 YWFENTRNGLF 11 Unmodified _YWFENTRNGLF_ 0 0 0 nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENSG00000137857|ENST00000389037|DUOX1;nc|ENSG00000137857|Q9NRD9-2|DUOX1;ENST00000558383.1_1_15:45393877-45400429:-|nuORF nc|ENSG00000140279|Q9NRD8|DUOX2 nc|ENSG00000140279|Q9NRD8|DUOX2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 723.8433837890625 2 723.843676 1445.6728 -0.13511 -9.78E-05 0.42914 0.00031063 0.29403 0.00021283 723.8437594054083 93.21 0.44517 87.034 86.788 87.233 -6.1757 49 32 2 0 0 0 4.9562E-22 2 61692 61561;61692 154.75 125.67 1 30348000 81247 5216 54495 55628 94435;94436 94436 -0.03221028033544826 YWFKKMENI 9 Unmodified _YWFKKMENI_ 0 0 0 ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-2|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 ENSG00000101596|ENST00000320876|SMCHD1 MSMS AL20221201_MKP_PDAC_01 4 420.2145690917969 3 420.214482 1257.62162 NaN NaN NaN NaN NaN NaN NaN 80.154 1 73.979 73.479 74.479 -6.1757 0 0 0 0.46232 1 52575 52575 17.113 3.2068 1 81248 1980 54496 55629 94437 94437 0.0031093166805931105 YWFKYYVYLMQ 11 Unmodified _YWFKYYVYLMQ_ 0 0 0 ENST00000505799.1_1_5:37379427-37381852:+|nuORF ENST00000505799.1_1_5:37379427-37381852:+|nuORF ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3856201171875 2 802.386331 1602.75811 NaN NaN NaN NaN NaN NaN NaN 51.903 1 51.903 51.403 52.403 0 0 0 0 0.94307 1 28696 28696 0.30703 0.03801 1 81249 14516 54497 55630 94438 94438 -0.019159988921046534 YWGAVMNYV 9 Unmodified _YWGAVMNYV_ 0 0 0 REV__ENSG00000140873|ENST00000282849|ADAMTS18 REV__ENSG00000140873|ENST00000282849|ADAMTS18 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7529907226562 2 551.754953 1101.49535 0.27565 0.00015209 -3.6454 -0.0020114 -3.3698 -0.0018593 551.7530540712107 31.583 0.19892 31.583 31.482 31.681 0 20 9 3 0 0 0 0.48152 1 16477 16477 8.5933 0.68312 1 1255400 + 81250 20500 54498 55631 94439 94439 -0.05133574837236665 YWGHHFSMNWI 11 Unmodified _YWGHHFSMNWI_ 0 0 0 ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C ENSG00000158481|ENST00000368170|CD1C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 739.327392578125 2 739.327139 1476.63972 NaN NaN NaN NaN NaN NaN NaN 17.126 1 17.131 16.631 17.631 0.0050564 0 0 0 0.9435 1 8624 8624 0 0 1 81251 6591 54499 55632 94440 94440 -0.07952933357228176 YWHFLTDTF 9 Unmodified _YWHFLTDTF_ 0 0 0 nc|ENSG00000134779|Q68CL5-1|TPGS2;nc|ENSG00000134779|Q68CL5-4|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-3|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 nc|ENSG00000134779|Q68CL5-1|TPGS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.2872314453125 2 615.284931 1228.55531 1.2474 0.00076752 1.3324 0.00081979 2.5798 0.0015873 615.2859384467336 82.691 0.25838 82.753 82.61 82.869 0.061996 15 9 2 0 0 0 0.40476 1 45786 45786 18.135 11.412 1 2532900 81252 4639 54500 55633 94441 94441 -0.0498256090236282 YWHPLSEVHI 10 Unmodified _YWHPLSEVHI_ 0 0 0 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 ENSG00000213160|ENST00000392647|KLHL23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 641.3253173828125 2 640.824755 1279.63496 -0.0017598 -1.1278E-06 0.11316 7.2516E-05 0.1114 7.1389E-05 640.8250060511444 87.193 0.21629 87.193 87.096 87.313 0 20 12 2 0 0 0 0.71276 1 48263 48263 1.4819 0 1 449690 81253 10423 54501 55634 94442 94442 0.006325057716594529 YWHSEACGNG 10 Unmodified _YWHSEACGNG_ 0 0 0 ENSG00000109771|ENST00000505916|LRP2BP;nc|ENSG00000109771|Q9P2M1-2|LRP2BP ENSG00000109771|ENST00000505916|LRP2BP ENSG00000109771|ENST00000505916|LRP2BP MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1951904296875 3 375.146907 1122.41889 -0.47132 -0.00017682 0.67736 0.00025411 0.20604 7.7296E-05 375.14727742856024 41.51 0.36675 41.51 41.364 41.731 0 90 18 7 0 0 0 0.71123 1 22330 22330 0.69767 0 1 124620000 81254 2672 54502 55635 94443 94443 -0.1374199840449819 YWHSSAHIM 9 Unmodified _YWHSSAHIM_ 0 0 0 ENSG00000113407|ENST00000265112|TARS1;nc|ENSG00000113407|P26639-2|TARS1 ENSG00000113407|ENST00000265112|TARS1 ENSG00000113407|ENST00000265112|TARS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 377.8391723632812 3 377.839526 1130.49675 NaN NaN NaN NaN NaN NaN NaN 85.566 1 85.064 84.564 85.564 -0.5015 0 0 0 0.84737 1 46829 46829 0.96228 0 1 81255 2966 54503 55636 94444 94444 -0.06327940748474248 YWIELFAF 8 Unmodified _YWIELFAF_ 0 0 0 REV__ENSG00000176198|ENST00000641082|OR11H4 REV__ENSG00000176198|ENST00000641082|OR11H4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 544.780029296875 2 544.776211 1087.53787 0.79327 0.00043216 2.271 0.0012372 3.0643 0.0016694 545.278766868651 52.479 0.27871 52.42 52.267 52.546 -0.058918 28 13 3 0 0 0 0.71616 1 28415 28415 15.768 2.2603 1 2995200 + 81256 22915 54504 55637 94445 94445 -0.0023985643736068596 YWITRRFVN 9 Unmodified _YWITRRFVN_ 0 0 0 ENST00000607532.5_1_6:13307806-13327130:-|nuORF;ENSG00000145979|ENST00000379300|TBC1D7;nc|ENSG00000145979|Q9P0N9-3|TBC1D7;nc|ENSG00000145979|Q9P0N9-2|TBC1D7 ENST00000607532.5_1_6:13307806-13327130:-|nuORF ENST00000607532.5_1_6:13307806-13327130:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 419.3157348632812 3 418.896252 1253.66693 NaN NaN NaN NaN NaN NaN NaN 21.032 1 21.043 20.543 21.543 0.010553 0 0 0 0.85798 1 10747 10747 0.23584 0.095952 1 81257 5742 54505 55638 94446 94446 0.05023918245456116 YWKIYNSIYI 10 Unmodified _YWKIYNSIYI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 681.8590087890625 2 681.858264 1361.70197 0.59715 0.00040717 0.27434 0.00018706 0.87149 0.00059423 681.8581806190629 78.7 0.35815 78.752 78.553 78.911 0.052452 28 13 3 0 0 0 0.077785 1 43441 43441 51.63 24.407 1 6327400 81258 3132 54506 55639 94447 94447 0.0355911626274974 YWKIYNSIYI 10 Unmodified _YWKIYNSIYI_ 0 0 0 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 ENSG00000115524|ENST00000335508|SF3B1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.8592529296875 2 681.858264 1361.70197 1.5138 0.0010322 -0.44247 -0.0003017 1.0714 0.00073052 681.8579414191298 96.217 0.27251 90.041 89.877 90.15 -6.1757 53 16 4 0 0 0 0.016642 2 63807 63678;63807 78.728 48.887 1 110300000 81259 3132 54506 55639 94448;94449 94449 0.0355911626274974 YWKKAFRS 8 Unmodified _YWKKAFRS_ 0 0 0 ENST00000465851.1_1_2:196578167-196578251:+|nuORF ENST00000465851.1_1_2:196578167-196578251:+|nuORF ENST00000465851.1_1_2:196578167-196578251:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.5342102050781 3 362.534543 1084.5818 NaN NaN NaN NaN NaN NaN NaN 22.049 1 22.049 21.549 22.549 0 0 0 0 0.97444 1 11202 11202 1.4819 0.41044 1 81260 13742 54507 55640 94450 94450 0.04289172779635919 YWKTGILTTK 10 Unmodified _YWKTGILTTK_ 0 0 0 ENST00000359429.10_1_2:210884531-210884600:+|nuORF ENST00000359429.10_1_2:210884531-210884600:+|nuORF ENST00000359429.10_1_2:210884531-210884600:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 1211.883544921875 1 1210.68304 1209.67576 0.28461 0.00034457 -1.5602 -0.0018889 -1.2756 -0.0015444 1211.6840955920093 26.941 0.10019 26.909 26.851 26.951 -0.031708 7 5 2 0 0 0 0.72196 1 13851 13851 0.45834 0.057624 1 36855000 81261 12145 54508 55641 94451 94451 0.0793084709125651 YWLHAFPEL 9 Unmodified _YWLHAFPEL_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 588.2987060546875 2 588.297842 1174.58113 1.0793 0.00063493 0.3283 0.00019314 1.4076 0.00082807 588.2972419396494 98.447 0.1476 92.272 92.176 92.324 -6.1757 21 9 3 0 0 0 0.0086629 1 65286 65286 101.72 63.546 1 36638000 81262 950 54509 55642 94452 94452 0.0008233333994667191 YWLHAFPELYF 11 Unmodified _YWLHAFPELYF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 743.3670043945312 2 743.363713 1484.71287 4.2858 0.0031859 -0.46158 -0.00034312 3.8243 0.0028428 743.3633718904237 99.259 0.11055 99.23 99.164 99.274 -0.028282 6 3 2 0 0 0 0.44389 1 55151 55151 19.257 9.8739 1 5542100 81263 950 54510 55643 94453 94453 -0.010094813629393684 YWLHAFPELYF 11 Unmodified _YWLHAFPELYF_ 0 0 0 ENSG00000067167|ENST00000262213|TRAM1;nc|ENSG00000067167|Q15629-2|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 ENSG00000067167|ENST00000262213|TRAM1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 743.3645629882812 2 743.363713 1484.71287 1.22 0.00090688 -0.34456 -0.00025614 0.87541 0.00065075 743.3631759074059 100.76 0.081154 94.585 94.541 94.623 -6.1757 10 5 3 0 0 0 0.15484 1 67494 67494 36.127 17.981 1 20566000 81264 950 54510 55643 94454 94454 -0.010094813629393684 YWLMWLLQLLM 11 Unmodified _YWLMWLLQLLM_ 0 0 0 REV__ENSG00000163982|ENST00000296358|OTOP1 REV__ENSG00000163982|ENST00000296358|OTOP1 MSMS AL20221201_MKP_PDAC_01 4 503.938232421875 3 503.938072 1508.79239 NaN NaN NaN NaN NaN NaN NaN 16.668 1 14.111 13.611 14.611 -2.557 0 0 0 0.94337 1 8651 8651 0.094841 0 1 + 81265 21844 54511 55644 94455 94455 0.05834125995170325 YWLSPPFLF 9 Unmodified _YWLSPPFLF_ 0 0 0 ENST00000464307.5_1_11:64374670-64390737:-|nuORF ENST00000464307.5_1_11:64374670-64390737:-|nuORF ENST00000464307.5_1_11:64374670-64390737:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.248291015625 3 390.539182 1168.59572 -0.53963 -0.00021074 -0.14435 -5.6373E-05 -0.68397 -0.00026712 390.53916559741083 18.19 0.10857 18.204 18.125 18.233 0.013865 27 17 2 0 0 0 0.2191 1 9118 9118 0 0 1 1166200 81266 13714 54512 55645 94456 94456 0.018164054880799085 YWLYKIEIKRH 11 Unmodified _YWLYKIEIKRH_ 0 0 0 ENST00000503370.5_1_4:123814355-123833769:-|nuORF ENST00000503370.5_1_4:123814355-123833769:-|nuORF ENST00000503370.5_1_4:123814355-123833769:-|nuORF MSMS AL20221201_MKP_PDAC_01 4 516.9599609375 3 516.961033 1547.86127 NaN NaN NaN NaN NaN NaN NaN 77.02 1 70.844 70.344 71.344 -6.1757 0 0 0 0.94196 1 50373 50373 1.1098 0 1 81267 14469 54513 55646 94457 94457 0.10925249610727406 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(60)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.2742309570312 2 621.274041 1240.53353 -0.15369 -9.5481E-05 0.53237 0.00033075 0.37869 0.00023527 621.274572595988 44.305 0.17684 43.989 43.917 44.094 -0.31585 15 12 2 0 0 0 0.023164 1 23648 23648 60.39 33.506 1 23344000 81268 3064 54514 55647 94458 94458 530 -0.07711688922563553 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(82)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 621.2744140625 2 621.274041 1240.53353 0.40678 0.00025272 -0.41651 -0.00025877 -0.0097361 -6.0488E-06 621.2737265147255 43.969 0.31633 43.953 43.803 44.119 -0.015667 30 20 2 0 0 0 0.0094915 2 23549 23549;23654 81.864 61.41 1 76564000 81269 3064 54514 55647 94459;94460 94459 530 -0.07711688922563553 YWMHVQNTF 9 Oxidation (M) _YWM(Oxidation (M))HVQNTF_ YWM(1)HVQNTF YWM(130)HVQNTF 0 0 1 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 621.2726440429688 2 621.274041 1240.53353 0.9636 0.00059866 -0.66898 -0.00041562 0.29462 0.00018304 621.2737584757898 49.551 0.50744 44.119 43.882 44.39 -5.432 94 31 4 0 0 0 0.0031966 3 30873 30873;30925;31049 125.62 94.988 1 203470000 81270 3064 54514 55647 94461;94462;94463 94461 530 -0.07711688922563553 YWMHVQNTF 9 Unmodified _YWMHVQNTF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2764892578125 2 613.276583 1224.53861 0.99148 0.00060805 -0.75467 -0.00046282 0.23681 0.00014523 613.2761025851488 57.122 0.2437 57.056 56.917 57.161 -0.066036 32 11 3 0 0 0 0.044011 1 31074 31074 53.576 39.67 1 11511000 81271 3064 54514 55648 94464 94464 -0.06467385059931985 YWMHVQNTF 9 Unmodified _YWMHVQNTF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.276611328125 2 613.276583 1224.53861 0.71176 0.0004365 -0.22612 -0.00013867 0.48564 0.00029783 613.2766799535312 63.171 1.1214 56.995 56.759 57.88 -6.1757 187 62 5 0 0 0 0.0038489 3 40695 40695;40828;40967 125.62 98.741 1 151180000 81272 3064 54514 55648 94465;94466;94467 94465 -0.06467385059931985 YWMHVQNTF 9 Unmodified _YWMHVQNTF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MULTI-MSMS AL20221201_MKP_PDAC_01 4 613.2772827148438 2 613.276583 1224.53861 1.35 0.00082791 -0.45952 -0.00028181 0.89046 0.0005461 613.2761534071012 64.407 0.42751 58.231 57.935 58.363 -6.1757 46 22 3 0 0 0 0.021948 3 41730 41586;41730;41790 78.149 52.75 1 19782000 81273 3064 54514 55648 94468;94469;94470 94469 -0.06467385059931985 YWMHVQNTF 9 Unmodified _YWMHVQNTF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MSMS AL20221201_MKP_PDAC_01 4 613.2767333984375 2 613.276583 1224.53861 NaN NaN NaN NaN NaN NaN NaN 65.485 1 59.309 58.809 59.809 -6.1757 0 0 0 0.13831 1 42510 42510 50.855 25.456 1 81274 3064 54514 55648 94471 94471 -0.06467385059931985 YWMHVQNTF 9 Unmodified _YWMHVQNTF_ 0 0 0 ENSG00000114796|ENST00000242810|KLHL24;nc|ENSG00000114796|Q6TFL4-2|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 ENSG00000114796|ENST00000242810|KLHL24 MSMS AL20221201_MKP_PDAC_01 4 613.27587890625 2 613.276583 1224.53861 NaN NaN NaN NaN NaN NaN NaN 65.671 1 59.495 58.995 59.995 -6.1757 0 0 0 0.038824 1 42645 42645 70.716 48.969 1 81275 3064 54514 55648 94472 94472 -0.06467385059931985 YWPHRYLTY 9 Unmodified _YWPHRYLTY_ 0 0 0 ENSG00000174792|ENST00000311623|ODAPH ENSG00000174792|ENST00000311623|ODAPH ENSG00000174792|ENST00000311623|ODAPH MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 649.2889404296875 2 649.819473 1297.62439 -0.43831 -0.00028482 -1.649 -0.0010716 -2.0873 -0.0013564 649.8186113482317 29.265 0.26907 29.265 29.142 29.411 0 16 12 2 0 0 0 0.21819 1 15121 15121 2.0598 0.21551 1 777120 81276 8457 54515 55649 94473 94473 -0.012514768827713851 YWQLHVQMRK 10 Unmodified _YWQLHVQMRK_ 0 0 0 ENST00000311085.8_2_5:118484460-118484514:+|nuORF ENST00000311085.8_2_5:118484460-118484514:+|nuORF ENST00000311085.8_2_5:118484460-118484514:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 463.5794677734375 3 463.580046 1387.71831 0.45206 0.00020957 -0.89288 -0.00041392 -0.44081 -0.00020435 463.579446068074 40.473 0.23016 40.176 40.094 40.324 -0.29716 23 10 3 0 0 0 0.69064 1 21408 21408 1.9064 0 1 2560500 81277 11684 54516 55650 94474 94474 0.039959189478395274 YWQLSNHM 8 Unmodified _YWQLSNHM_ 0 0 0 REV__ENST00000428417.5_1_1:15546673-15546847:+|nuORF REV__ENST00000428417.5_1_1:15546673-15546847:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 539.7421875 2 539.742376 1077.4702 -0.96736 -0.00052213 -0.3262 -0.00017606 -1.2936 -0.00069819 539.7422008743305 77.94 0.59244 77.458 77.189 77.782 -0.4826 127 39 4 0 0 0 0.80232 1 42765 42765 5.2307 0 1 73684000 + 81278 26938 54517 55651 94475 94475 -0.06543629639782012 YWQQTEDDLTV 11 Unmodified _YWQQTEDDLTV_ 0 0 0 nc|ENSG00000120526|Q96RS6-2|NUDCD1;ENSG00000120526|ENST00000239690|NUDCD1;nc|ENSG00000120526|Q96RS6-3|NUDCD1;ENST00000519607.5_1_8:110255240-110326067:-|nuORF nc|ENSG00000120526|Q96RS6-2|NUDCD1 nc|ENSG00000120526|Q96RS6-2|NUDCD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 466.5452575683594 3 466.545502 1396.61468 0.84663 0.00039499 -0.18651 -8.7016E-05 0.66012 0.00030797 466.5452514952774 38.568 0.33549 38.568 38.476 38.811 0 24 15 2 0 0 0 0.73115 1 20631 20631 0.45452 0 1 2610700 81279 3520 54518 55652 94476 94476 -0.06776754469478874 YWQSCEWC 8 Unmodified _YWQSCEWC_ 0 0 0 REV__ENST00000374647.9_1_9:111689680-111692103:-|nuORF REV__ENST00000374647.9_1_9:111689680-111692103:-|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 369.2486267089844 3 368.801972 1103.38409 0.15639 5.7677E-05 -1.9439 -0.00071691 -1.7875 -0.00065924 368.80114401916416 58.394 0.45283 58.394 58.131 58.583 0 37 17 3 0 0 0 8.7369 1 32398 32398 0.45834 0 1 1329300 + 81280 26184 54519 55653 94477 94477 -0.1634695753680262 YWRLFRKLPE 10 Unmodified _YWRLFRKLPE_ 0 0 0 ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF ENST00000502508.5_1_5:33441192-33446243:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 704.3984985351562 2 704.398422 1406.78229 -0.012116 -8.5344E-06 -0.11848 -8.3461E-05 -0.1306 -9.1995E-05 704.3983496917787 93.734 0.90093 93.734 93.344 94.245 0 137 56 3 0 0 0 0.72607 1 51648 51648 0 0 1 926800 81281 14453 54520 55654 94478 94478 0.09517022376439854 YWRPFYFRIRY 11 Unmodified _YWRPFYFRIRY_ 0 0 0 REV__ENSG00000096968|ENST00000381652|JAK2 REV__ENSG00000096968|ENST00000381652|JAK2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 833.7775268554688 2 833.935702 1665.85685 NaN NaN NaN NaN NaN NaN NaN 107.29 1 107.24 106.74 107.74 -0.047607 0 0 0 0.9435 1 59446 59446 0 0 1 + 81282 17964 54521 55655 94479 94479 0.05055785187823858 YWRPGLGPPSA 11 Unmodified _YWRPGLGPPSA_ 0 0 0 ENST00000307522.3_1_19:46916540-46916792:-|nuORF ENST00000307522.3_1_19:46916540-46916792:-|nuORF ENST00000307522.3_1_19:46916540-46916792:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 400.876953125 3 400.876857 1199.60874 NaN NaN NaN NaN NaN NaN NaN 19.652 1 19.68 19.18 20.18 0.028357 0 0 0 0.9435 1 9921 9921 0 0 1 81283 11639 54522 55656 94480 94480 0.016922366002063427 YWRYDERRQMM 11 Unmodified _YWRYDERRQMM_ 0 0 0 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 ENSG00000262406|ENST00000571244|MMP12 MSMS AL20221201_MKP_PDAC_01 4 817.3751220703125 2 817.371752 1632.72895 NaN NaN NaN NaN NaN NaN NaN 106.01 1 99.83 99.33 100.33 -6.1757 0 0 0 0.9435 1 70984 70984 0 0 1 81284 10848 54523 55657 94481 94481 -0.062104664600610704 YWSHPRKF 8 Unmodified _YWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 374.1944580078125 3 374.194409 1119.5614 -0.26024 -9.7382E-05 -0.23675 -8.859E-05 -0.49699 -0.00018597 374.1943600656637 31.847 0.30172 31.877 31.732 32.033 0.030106 35 13 3 0 0 0 0.70102 1 16705 16705 17.113 4.8722 1 16130000 81285 10455 54524 55658 94482 94482 0.0064000211982602195 YWSHPRKF 8 Unmodified _YWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7889404296875 2 560.787976 1119.5614 0.90025 0.00050485 1.0205 0.00057229 1.9208 0.0010771 560.7883768973317 35.513 0.31654 31.321 31.177 31.493 -4.1928 33 19 2 0 0 0 0.16757 1 20608 20608 85.272 56.785 1 15847000 81286 10455 54524 55658 94483 94483 0.0064000211982602195 YWSHPRKF 8 Unmodified _YWSHPRKF_ 0 0 0 ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF;ENST00000557367.2_1_14:50053001-50053064:-|nuORF ENSG00000213741|ENST00000245458|RPS29 ENSG00000213741|ENST00000245458|RPS29 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 374.1800537109375 3 374.194409 1119.5614 1.2429 0.00046509 -0.35941 -0.00013449 0.8835 0.0003306 374.1942635614378 35.529 0.46115 31.337 31.094 31.555 -4.1928 82 28 4 0 0 0 8.7369 1 20659 20659 18.146 13.817 1 57729000 81287 10455 54524 55658 94484 94484 0.0064000211982602195 YWSKSKRNY 9 Unmodified _YWSKSKRNY_ 0 0 0 ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 ENSG00000154265|ENST00000392676|ABCA5 MSMS AL20221201_MKP_PDAC_01 4 411.2136840820312 3 411.212128 1230.61456 NaN NaN NaN NaN NaN NaN NaN 28.277 1 25.129 24.629 25.629 -3.1482 0 0 0 0.50124 1 15756 15756 10.8 0 1 81288 6315 54525 55659 94485 94485 0.008473351118482242 YWSLYSSSV 9 Unmodified _YWSLYSSSV_ 0 0 0 REV__nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7 REV__nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 546.2546997070312 2 546.25584 1090.49713 NaN NaN NaN NaN NaN NaN NaN 27.884 1 27.914 27.414 28.414 0.029564 0 0 0 0.6306 1 14504 14504 11.64 4.3511 1 + 81289 29954 54526 55660 94486 94486 -0.04450242547613925 YWTLPLDF 8 Unmodified _YWTLPLDF_ 0 0 0 REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1 REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1 MSMS AL20221201_MKP_PDAC_01 4 528.212890625 2 527.765843 1053.51713 NaN NaN NaN NaN NaN NaN NaN 90.553 1 84.377 83.877 84.877 -6.1757 0 0 0 0.93066 1 59821 59821 14.582 1.0738 1 + 81290 23154 54527 55661 94487 94487 -0.007484468170105174 YWVHLIDHF 9 Unmodified _YWVHLIDHF_ 0 0 0 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 ENSG00000268104|ENST00000598581|SLC6A14 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.5419616699219 3 410.541586 1228.60293 1.4465 0.00059383 0.21439 8.8018E-05 1.6609 0.00068185 410.5417774363231 94.304 0.15543 88.128 88.064 88.219 -6.1757 12 8 2 0 0 0 0.11784 1 62487 62487 31.268 25.536 1 5144900 81291 10872 54528 55662 94488 94488 -0.0022286191149305523 YWVMKDYTRAL 11 Unmodified _YWVMKDYTRAL_ 0 0 0 nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 nc|ENSG00000104093|Q8TDJ6|DMXL2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 723.3653564453125 2 723.36593 1444.71731 0.105 7.5953E-05 -0.73475 -0.00053149 -0.62975 -0.00045554 723.3654892898973 68.83 0.29946 68.83 68.679 68.978 0 29 12 3 0 0 0 0.71341 1 38349 38349 2.9952 0 1 2278400 81292 2177 54529 55663 94489 94489 0.01273659788284931 YWVTSKGGC 9 Unmodified _YWVTSKGGC_ 0 0 0 REV__chr1:225879410-225883972|104|12.19|0.46|4.74|-|2|TMEM63A,None|1 REV__chr1:225879410-225883972|104|12.19|0.46|4.74|-|2|TMEM63A,None|1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 501.7322692871094 2 500.731477 999.448402 0.32709 0.00016378 0.69975 0.00035039 1.0268 0.00051417 500.7328891923088 23.851 0.76061 21.023 20.563 21.323 -2.8273 161 44 5 0 0 0 0.23158 1 12730 12730 20.454 3.5113 1 61308000 + 81293 16769 54530 55664 94490 94490 -0.05134434388344289 YWYENHNI 8 Unmodified _YWYENHNI_ 0 0 0 ENSG00000179639|ENST00000693622|FCER1A ENSG00000179639|ENST00000693622|FCER1A ENSG00000179639|ENST00000693622|FCER1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.7521362304688 2 569.751256 1137.48796 0.89617 0.00051059 3.0803 0.001755 3.9764 0.0022656 569.7528017790361 81.588 0.32922 81.093 80.907 81.236 -0.4952 37 13 5 0 0 0 0.80143 1 44643 44643 5.7604 0.52976 1 1328400 81294 8852 54531 55665 94491 94491 -0.07528591113282346 YWYFYRREPFF 11 Unmodified _YWYFYRREPFF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 837.3991088867188 2 837.398618 1672.78268 NaN NaN NaN NaN NaN NaN NaN 42.959 1 42.959 42.459 43.459 0 0 0 0 0.9435 1 23297 23297 0 0 1 + 81295 17629 54532 55666 94492 94492 -0.026796026943657125 YWYFYRREPFF 11 Unmodified _YWYFYRREPFF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 837.3965454101562 2 837.398618 1672.78268 0.010685 8.9478E-06 -1.9701 -0.0016498 -1.9594 -0.0016408 837.8982396472768 67.46 0.25197 66.978 66.844 67.096 -0.48219 24 10 3 0 0 0 0.7453 1 36850 36850 0 0 1 1855700 + 81296 17629 54532 55666 94493 94493 -0.026796026943657125 YWYFYRREPFF 11 Unmodified _YWYFYRREPFF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 837.3964233398438 2 837.398618 1672.78268 NaN NaN NaN NaN NaN NaN NaN 66.983 1 67.001 66.501 67.501 0.018028 0 0 0 0.9435 1 36759 36759 0 0 1 + 81297 17629 54532 55666 94494 94494 -0.026796026943657125 YWYFYRREPFF 11 Unmodified _YWYFYRREPFF_ 0 0 0 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 REV__nc|ENSG00000078549|P41586-5|ADCYAP1R1 MSMS AL20221201_MKP_PDAC_01 4 837.3977661132812 2 837.398618 1672.78268 NaN NaN NaN NaN NaN NaN NaN 75.581 1 69.405 68.905 69.905 -6.1757 0 0 0 0.94301 1 49431 49431 0.35063 0.35063 1 + 81298 17629 54532 55666 94495 94495 -0.026796026943657125 YWYWWNKYVD 10 Unmodified _YWYWWNKYVD_ 0 0 0 REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF REV__ENST00000359165.5_1_12:19609713-19609968:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 761.841552734375 2 761.843145 1521.67174 NaN NaN NaN NaN NaN NaN NaN 75.988 1 75.988 75.488 76.488 0 0 0 0 1.0029 1 42258 42258 0.35063 0.043601 1 + 81299 25887 54533 55667 94496 94496 -0.0682324240244725 YYADNWKDHL 10 Unmodified _YYADNWKDHL_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 442.20263671875 3 442.20341 1323.5884 -0.3404 -0.00015053 0.012825 5.6714E-06 -0.32758 -0.00014486 442.20324305235135 41.811 0.18182 41.504 41.392 41.574 -0.30682 15 8 2 0 0 0 0.043225 1 22186 22186 46.475 29.427 1 9087700 81300 7091 54534 55668 94497 94497 -0.060449788502864976 YYADNWKDHL 10 Unmodified _YYADNWKDHL_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 442.5373229980469 3 442.20341 1323.5884 0.57995 0.00025645 0.57558 0.00025452 1.1555 0.00051098 442.20362715473806 46.468 0.25929 41.387 41.215 41.475 -5.0805 38 24 2 0 0 0 3.6552E-05 1 28641 28641 104.48 82.685 1 43456000 81301 7091 54534 55668 94498 94498 -0.060449788502864976 YYADNWKDHL 10 Unmodified _YYADNWKDHL_ 0 0 0 ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH ENSG00000163898|ENST00000296252|LIPH MSMS AL20221201_MKP_PDAC_01 4 442.2033081054688 3 442.20341 1323.5884 NaN NaN NaN NaN NaN NaN NaN 46.564 1 41.483 40.983 41.983 -5.0805 0 0 0 0.33727 1 28797 28797 36.395 27.419 1 81302 7091 54534 55668 94499 94499 -0.060449788502864976 YYAEVETRI 9 Unmodified _YYAEVETRI_ 0 0 0 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 572.2899780273438 2 572.287671 1142.56079 0.45024 0.00025766 -0.087224 -4.9917E-05 0.36301 0.00020775 572.288299764969 42.191 0.51984 42.191 42.105 42.625 0 46 25 3 0 0 0 0.062454 1 22807 22807 41.956 15.614 1 21575000 81303 2908 54535 55669 94500 94500 -0.004788821105421448 YYAEVETRI 9 Unmodified _YYAEVETRI_ 0 0 0 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 ENSG00000112685|ENST00000230449|EXOC2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 572.2885131835938 2 572.287671 1142.56079 0.91972 0.00052634 -0.78456 -0.00044899 0.13516 7.735E-05 572.2876876210638 47.973 0.44317 42.739 42.515 42.958 -5.2339 47 26 2 0 0 0 0.012668 2 29752 29752;29883 72.968 38.781 1 81238000 81304 2908 54535 55669 94501;94502 94501 -0.004788821105421448 YYAGEFHKM 9 Unmodified _YYAGEFHKM_ 0 0 0 ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE ENSG00000115020|ENST00000264380|PIKFYVE MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.5084838867188 3 382.507665 1144.50117 1.2245 0.00046839 -0.67081 -0.00025659 0.5537 0.0002118 382.507488323126 31.955 0.25586 28.259 28.138 28.394 -3.6958 19 13 2 0 0 0 0.21643 1 18150 18150 15.739 11.023 1 10112000 81305 3079 54536 55670 94503 94503 -0.0653047632556536 YYALEVSYF 9 Unmodified _YYALEVSYF_ 0 0 0 ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF ENSG00000121022|ENST00000357849|COPS5 ENSG00000121022|ENST00000357849|COPS5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.7740478515625 2 577.773865 1153.53318 0.93405 0.00053967 -0.1861 -0.00010752 0.74795 0.00043215 577.7737194511622 92.393 0.78664 86.217 85.788 86.575 -6.1757 88 47 2 0 0 0 0.16776 2 61222 61097;61222 26.341 11.529 1 59976000 81306 3561 54537 55671 94504;94505 94505 -0.037447853707590184 YYALRAAGF 9 Unmodified _YYALRAAGF_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 516.2688598632812 2 516.269084 1030.52362 0.45262 0.00023367 0.45884 0.00023688 0.91146 0.00047056 516.2692399737169 53.002 0.31896 52.938 52.761 53.08 -0.063423 39 15 4 0 0 0 0.019303 2 28695 28695;28804 64.236 47.294 1 6649300 81307 7998 54538 55672 94506;94507 94506 0.009574911343634085 YYALRAAGF 9 Unmodified _YYALRAAGF_ 0 0 0 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 ENSG00000170522|ENST00000302274|ELOVL6 MULTI-MATCH AL20221201_MKP_PDAC_01 4 2 516.269084 1030.52362 1.3845 0.00071479 0.32775 0.00016921 1.7123 0.000884 516.269217844194 59.037 0.31124 52.963 52.719 53.03 -6.0745 0.012188 -0.00011998 NaN 64.236 27 16 2 NaN NaN NaN NaN 0 NaN NaN 0 23807000 81308 7998 54538 55672 0.009574911343634085 YYARIGDNL 9 Unmodified _YYARIGDNL_ 0 0 0 nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA;ENST00000559156.5_1_15:70968828-70976706:-|nuORF;ENST00000560523.5_1_15:70964229-70991966:-|nuORF nc|ENSG00000137831|Q9BZF9-2|UACA nc|ENSG00000137831|Q9BZF9-2|UACA MSMS AL20221201_MKP_PDAC_01 4 542.7770385742188 2 542.774731 1083.53491 NaN NaN NaN NaN NaN NaN NaN 47.736 1 42.502 42.002 43.002 -5.2339 0 0 0 0.030047 1 29659 29659 66.457 18.111 1 81309 4978 54539 55673 94508 94508 -0.003517315621365924 YYASAFSMM 9 2 Oxidation (M) _YYASAFSM(Oxidation (M))M(Oxidation (M))_ YYASAFSM(1)M(1) YYASAFSM(82)M(82) 0 0 2 nc|ENSG00000244038|P39656-2|DDOST;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST nc|ENSG00000244038|P39656-2|DDOST nc|ENSG00000244038|P39656-2|DDOST MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.7149047851562 2 551.714636 1101.41472 0.3955 0.0002182 -0.35759 -0.00019729 0.037906 2.0913E-05 551.7145516130231 41.017 0.44825 40.714 40.461 40.909 -0.30304 54 21 3 0 0 0 0.0094915 2 21641 21641;21752 81.864 73.271 1 6196100 81310 10723 54540 55674 94509;94510 94509 1716;1717 -0.13193223942425902 YYASFLEVL 9 Unmodified _YYASFLEVL_ 0 0 0 ENST00000451571.1_1_9:79607732-79607996:+|nuORF;ENST00000558053.1_1_15:44846774-44849853:+|nuORF;nc|ENSG00000104131|O75822-3|EIF3J;ENSG00000104131|ENST00000261868|EIF3J ENST00000451571.1_1_9:79607732-79607996:+|nuORF ENST00000451571.1_1_9:79607732-79607996:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7832641601562 2 552.784233 1103.55391 1.5842 0.00087572 -1.0744 -0.00059394 0.50976 0.00028179 552.7830832524348 100.93 0.1299 94.757 94.701 94.831 -6.1757 15 7 3 0 0 0 0.3554 1 67643 67643 14.582 0 1 61413000 81311 13524 54541 55675 94511 94511 0.006278050089122189 YYASLHIDFY 10 Unmodified _YYASLHIDFY_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 646.3038330078125 2 646.303321 1290.59209 0.18728 0.00012104 0.69318 0.00044801 0.88046 0.00056904 646.3033901549967 59.639 0.32637 59.149 58.946 59.272 -0.49079 38 15 3 0 0 0 0.31022 1 32417 32417 26.884 5.3467 1 3787700 81312 8037 54542 55676 94512 94512 -0.041583090764333974 YYASLHIDFY 10 Unmodified _YYASLHIDFY_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 646.3041381835938 2 646.303321 1290.59209 0.5427 0.00035075 0.50748 0.00032798 1.0502 0.00067873 646.3029483512072 59.251 0.44432 59.198 58.867 59.312 -0.053062 41 21 3 0 0 0 0.2178 1 32283 32283 32.305 8.2849 1 9210300 81313 8037 54542 55676 94513 94513 -0.041583090764333974 YYATGLDQPLQ 11 Unmodified _YYATGLDQPLQ_ 0 0 0 REV__ENSG00000134463|ENST00000379215|ECHDC3 REV__ENSG00000134463|ENST00000379215|ECHDC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 423.5433044433594 3 423.543432 1267.60847 0.48331 0.0002047 -1.4346 -0.0006076 -0.95126 -0.0004029 423.54282237580696 75.88 0.40649 75.403 75.19 75.596 -0.47713 34 17 3 0 0 0 0.71036 1 41513 41513 1.3296 0 1 1809500 + 81314 19986 54543 55677 94514 94514 -0.01463227910335263 YYAYLPAKL 9 Unmodified _YYAYLPAKL_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 551.3043823242188 2 551.302593 1100.59063 NaN NaN NaN NaN NaN NaN NaN 62.128 1 61.64 61.14 62.14 -0.48764 0 0 0 0.08978 1 33845 33845 46.021 29.079 1 81315 4913 54544 55678 94515 94515 0.04436101625469746 YYAYLPAKL 9 Unmodified _YYAYLPAKL_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 551.3029174804688 2 551.302593 1100.59063 0.29789 0.00016423 -4.0835 -0.0022512 -3.7856 -0.002087 551.3027662632402 61.765 0.29716 61.732 61.572 61.869 -0.032787 30 14 3 0 0 0 0.047196 1 33707 33707 46.021 28.908 1 5108400 81316 4913 54544 55678 94516 94516 0.04436101625469746 YYAYLPAKL 9 Unmodified _YYAYLPAKL_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MULTI-MSMS AL20221201_MKP_PDAC_01 4 551.30224609375 2 551.302593 1100.59063 0.70907 0.00039091 -3.1499 -0.0017366 -2.4409 -0.0013457 551.301315485929 67.119 0.48769 60.944 60.73 61.217 -6.1757 33 26 2 0 0 0 0.07916 1 43785 43785 37.974 14.826 1 12046000 81317 4913 54544 55678 94517 94517 0.04436101625469746 YYCHVSLWAPG 11 Unmodified _YYCHVSLWAPG_ 0 0 0 ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN ENSG00000134247|ENST00000393203|PTGFRN MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.3013305664062 2 648.297516 1294.58048 NaN NaN NaN NaN NaN NaN NaN 38.912 1 38.923 38.423 39.423 0.011452 0 0 0 0.94165 1 20711 20711 1.3295 0.36726 1 81318 4575 54545 55679 94518 94518 -0.05502829371403095 YYCRFDYE 8 Unmodified _YYCRFDYE_ 0 0 0 ENSG00000154330|ENST00000396396|PGM5 ENSG00000154330|ENST00000396396|PGM5 ENSG00000154330|ENST00000396396|PGM5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.731689453125 2 579.731674 1157.4488 NaN NaN NaN NaN NaN NaN NaN 1.6855 1 1.6855 1.1855 2.1855 0 0 0 0 0.97444 1 825 825 0 0 1 81319 6321 54546 55680 94519 94519 -0.12363059459153192 YYCTAENPSGK 11 Unmodified _YYCTAENPSGK_ 0 0 0 nc|ENSG00000171587|O60469-2|DSCAM;ENSG00000171587|ENST00000400454|DSCAM nc|ENSG00000171587|O60469-2|DSCAM nc|ENSG00000171587|O60469-2|DSCAM MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 617.2680053710938 2 616.766245 1231.51794 0.76926 0.00047445 -0.4051 -0.00024985 0.36415 0.0002246 616.7663073132298 47.662 0.2031 47.623 47.561 47.764 -0.038647 17 9 3 0 0 0 0.67922 1 25696 25696 6.2058 0 1 4643900 81320 8117 54547 55681 94520 94520 -0.08856020230291506 YYDDQTRQNI 10 Unmodified _YYDDQTRQNI_ 0 0 0 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;ENSG00000115762|ENST00000693505|PLEKHB2;nc|ENSG00000115762|Q96CS7-5|PLEKHB2;nc|ENSG00000115762|Q96CS7-2|PLEKHB2;nc|ENSG00000115762|Q96CS7-4|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-3|PLEKHB2;nc|ENSG00000115762|Q96CS7-6|PLEKHB2 nc|ENSG00000115762|Q96CS7-6|PLEKHB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 658.7994384765625 2 658.299298 1314.58404 -0.54685 -0.00035999 0.34863 0.0002295 -0.19822 -0.00013049 658.2994984309985 25.336 0.16623 25.336 25.26 25.427 0 13 7 2 0 0 0 0.36296 1 12994 12994 23.79 14.407 1 1108700 81321 16138;16139 54548 55682 94521 94521 -0.06066488063856923 YYDEIINAL 9 Unmodified _YYDEIINAL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.2784423828125 2 557.276772 1112.53899 0.43154 0.00024049 -0.29717 -0.0001656 0.13438 7.4885E-05 557.276652953757 77.307 0.28026 77.307 77.12 77.4 0 28 11 3 0 0 0 0.14602 1 42936 42936 28.487 17.663 1 2494800 81322 9843 54549 55683 94522 94522 -0.012776868590890444 YYDEIINAL 9 Unmodified _YYDEIINAL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.2756958007812 2 557.276772 1112.53899 -0.64749 -0.00036083 0.074864 4.172E-05 -0.57262 -0.00031911 557.2767512767438 77.814 0.31726 77.331 77.121 77.439 -0.4826 35 15 3 0 0 0 0.12841 2 42540 42540;42647 30.225 19.401 1 5896600 81323 9843 54549 55683 94523;94524 94523 -0.012776868590890444 YYDEIINAL 9 Unmodified _YYDEIINAL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2782592773438 2 557.276772 1112.53899 0.60208 0.00033553 1.2001 0.00066876 1.8021 0.0010043 557.2775739084653 85.68 0.48631 79.505 79.241 79.727 -6.1757 53 27 3 0 0 0 0.070838 1 56334 56334 39.957 23.015 1 27786000 81324 9843 54549 55683 94525 94525 -0.012776868590890444 YYDEKVVKL 9 Unmodified _YYDEKVVKL_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 386.2135009765625 3 386.213135 1155.61758 -0.0020618 -7.963E-07 1.1281 0.0004357 1.1261 0.00043491 386.21350598874426 37.816 0.26714 37.816 37.68 37.947 0 31 12 3 0 0 0 0.11784 1 20137 20137 35.612 27.168 1 6967300 81325 10739 54550 55684 94526 94526 0.045991654460067366 YYDEKVVKL 9 Unmodified _YYDEKVVKL_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.81640625 2 578.816064 1155.61758 0.2377 0.00013759 -0.17895 -0.00010358 0.05875 3.4005E-05 578.8160898561147 37.816 0.24536 37.816 37.724 37.969 0 24 11 3 0 0 0 0.015688 1 20149 20149 67.838 31.711 1 3342400 81326 10739 54550 55684 94527 94527 0.045991654460067366 YYDEKVVKL 9 Unmodified _YYDEKVVKL_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 386.2141723632812 3 386.213135 1155.61758 1.4809 0.00057195 0.58868 0.00022736 2.0696 0.00079931 386.21357450841685 42.652 0.36912 37.968 37.794 38.163 -4.6846 38 24 2 0 0 0 0.12424 2 25820 25695;25820 28.495 21.864 1 16708000 81327 10739 54550 55684 94528;94529 94529 0.045991654460067366 YYDEKVVKL 9 Unmodified _YYDEKVVKL_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.8152465820312 2 578.816064 1155.61758 1.1123 0.00064384 -2.5688 -0.0014868 -1.4564 -0.000843 579.3152581985184 42.63 0.22141 37.946 37.82 38.041 -4.6846 24 14 2 0 0 0 0.047714 1 25781 25781 45.74 24.203 1 9456300 81328 10739 54550 55684 94530 94530 0.045991654460067366 YYDEKVVKL 9 Unmodified _YYDEKVVKL_ 0 0 0 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 ENSG00000247626|ENST00000282276|MARS2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 386.213135 1155.61758 0.033638 1.2991E-05 1.7604 0.00067989 1.794 0.00069288 386.21396000500357 38.196 0.13014 37.925 37.862 37.992 -0.27133 0.022047 0.00077175 NaN 35.612 8 5 2 NaN NaN NaN NaN 0 NaN NaN 0 836620 81329 10739 54550 55684 0.045991654460067366 YYDFNESDF 9 Unmodified _YYDFNESDF_ 0 0 0 nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000545078.1_1_12:124411346-124414067:+|nuORF;ENST00000492261.5_1_12:124409716-124414381:+|nuORF nc|ENSG00000197653|Q8IVF4|DNAH10 nc|ENSG00000197653|Q8IVF4|DNAH10 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 600.2298583984375 2 600.230019 1198.44548 NaN NaN NaN NaN NaN NaN NaN 27.54 1 27.54 27.04 28.04 0 0 0 0 0.8622 1 14192 14192 0 0 1 81330 9988 54551 55685 94531 94531 -0.14580031032187435 YYDGKVMKL 9 Oxidation (M) _YYDGKVM(Oxidation (M))KL_ YYDGKVM(1)KL YYDGKVM(50)KL 0 0 1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.78857421875 2 566.788992 1131.56343 -0.20797 -0.00011788 -1.3879 -0.00078665 -1.5959 -0.00090452 566.7889102998246 25.401 0.42343 25.401 25.168 25.591 0 78 20 5 0 0 0 0.040683 1 13043 13043 49.554 23.213 1 12854000 81331 10191 54552 55686 94532 94532 1660 0.002912500227921555 YYDGKVMKL 9 Oxidation (M) _YYDGKVM(Oxidation (M))KL_ YYDGKVM(1)KL YYDGKVM(73)KL 0 0 1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 566.7886352539062 2 566.788992 1131.56343 0.76373 0.00043288 -0.3157 -0.00017894 0.44803 0.00025394 566.7888313406776 28.352 0.54333 25.203 24.896 25.439 -3.1482 88 28 4 0 0 0 0.012668 3 15662 15662;15776;15894 72.968 44.795 1 40166000 81332 10191 54552 55686 94533;94534;94535 94533 1660 0.002912500227921555 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 372.8636169433594 3 372.863449 1115.56852 NaN NaN NaN NaN NaN NaN NaN 36.45 1 36.45 35.95 36.95 0 0 0 0 0.41346 1 19335 19335 18.373 12.59 1 81333 10191 54552 55687 94536 94536 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 372.8632202148438 3 372.863449 1115.56852 -0.39436 -0.00014704 -0.12301 -4.5865E-05 -0.51736 -0.00019291 372.8634766436606 36.689 0.23919 36.439 36.315 36.554 -0.2497 25 10 3 0 0 0 0.20428 1 19238 19238 16.566 6.4153 1 19560000 81334 10191 54552 55687 94537 94537 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 558.7925415039062 2 558.791535 1115.56852 1.1716 0.00065467 -0.035256 -1.9701E-05 1.1363 0.00063497 558.791634522865 40.758 0.6699 36.228 35.858 36.528 -4.5294 122 41 4 0 0 0 0.0087807 3 24376 24251;24376;24505 106.94 63.082 1 137570000 81335 10191 54552 55687 94538;94539;94540 94539 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 372.8638610839844 3 372.863449 1115.56852 1.5711 0.00058582 -0.28542 -0.00010642 1.2857 0.0004794 372.86336809913945 40.755 0.82073 36.226 35.742 36.563 -4.5294 181 50 5 0 0 0 0.20428 2 24318 24318;24446 27.223 17.073 1 547170000 81336 10191 54552 55687 94541;94542 94541 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 558.791535 1115.56852 -0.19052 -0.00010646 0.33031 0.00018458 0.13979 7.8113E-05 558.7917510696618 36.689 0.17361 36.439 36.336 36.51 -0.2497 0.090312 0.00026574 NaN 106.94 13 7 2 NaN NaN NaN NaN 0 NaN NaN 0 3886100 81337 10191 54552 55687 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 558.791535 1115.56852 0.11797 6.5919E-05 1.4781 0.00082592 1.596 0.00089184 558.7927050657042 36.354 0.1108 36.379 36.326 36.437 0.024967 0.030017 0.0015484 NaN 106.94 7 4 2 NaN NaN NaN NaN 0 NaN NaN 0 851550 81338 10191 54552 55687 0.015355538854009865 YYDGKVMKL 9 Unmodified _YYDGKVMKL_ 0 0 0 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 ENSG00000198900|ENST00000361337|TOP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 372.863449 1115.56852 -0.247 -9.2096E-05 0.048027 1.7907E-05 -0.19897 -7.4188E-05 372.86347683524417 36.354 0.24615 36.379 36.272 36.518 0.024967 0.031035 0.00030355 NaN 16.566 13 10 2 NaN NaN NaN NaN 0 NaN NaN 0 3304800 81339 10191 54552 55687 0.015355538854009865 YYDGVAKI 8 Unmodified _YYDGVAKI_ 0 0 0 ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF;chr7:98320298-98355081|62|13.34|0.48|4.79|-|2|BAIAP2L1,None|1 ENSG00000006453|ENST00000005260|BAIAP2L1 ENSG00000006453|ENST00000005260|BAIAP2L1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 464.7428283691406 2 464.742368 927.470183 NaN NaN NaN NaN NaN NaN NaN 37.804 1 37.804 37.304 38.304 0 0 0 0 0.47897 1 20147 20147 42.095 13.608 1 81340 336 54553 55688 94543 94543 0.003546936318684857 YYDKAFDRI 9 Unmodified _YYDKAFDRI_ 0 0 0 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.532958984375 3 397.532868 1189.57677 0.41917 0.00016663 0.3766 0.00014971 0.79577 0.00031634 397.53290951658056 38.768 0.19811 38.768 38.66 38.858 0 20 8 3 0 0 0 0.2546 1 20729 20729 29.437 14.48 1 2357300 81341 1804 54554 55689 94544 94544 -0.010431758736103802 YYDKAFDRI 9 Unmodified _YYDKAFDRI_ 0 0 0 nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D nc|ENSG00000100353|O15371-2|EIF3D nc|ENSG00000100353|O15371-2|EIF3D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 397.532470703125 3 397.532868 1189.57677 0.0069679 2.77E-06 -1.2827 -0.00050992 -1.2757 -0.00050715 397.53231582685436 39.122 0.18369 38.835 38.741 38.925 -0.28687 15 7 3 0 0 0 0.2546 1 20639 20639 29.437 18.538 1 2960300 81342 1804 54554 55689 94545 94545 -0.010431758736103802 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 417.188720703125 3 417.188989 1248.54514 0.02823 1.1777E-05 0.061855 2.5805E-05 0.090084 3.7582E-05 417.18899275184157 39.604 0.38752 39.604 39.424 39.812 0 67 18 5 0 0 0 0.12424 1 21190 21190 28.495 23.779 1 76008000 81343 3048 54555 55690 94546 94546 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 625.2792358398438 2 625.279846 1248.54514 0.28118 0.00017582 -0.52586 -0.00032881 -0.24468 -0.00015299 625.2793120402157 39.605 0.26956 39.605 39.488 39.758 0 38 12 4 0 0 0 0.0047067 1 21207 21207 118.07 85.283 1 18587000 81344 3048 54555 55690 94547 94547 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2808227539062 2 625.279846 1248.54514 0.098815 6.1787E-05 0.418 0.00026137 0.51682 0.00032315 625.2800003527926 40.004 0.31374 39.706 39.548 39.862 -0.29716 47 14 5 0 0 0 1.5508E-06 1 21093 21093 160.69 116.92 1 24415000 81345 3048 54555 55690 94548 94548 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 417.189208984375 3 417.188989 1248.54514 0.2125 8.8654E-05 0.19922 8.3112E-05 0.41172 0.00017177 417.18901032469205 40.018 0.4301 39.72 39.512 39.942 -0.29716 71 20 5 0 0 0 0.39863 1 21166 21166 8.1555 3.4396 1 110890000 81346 3048 54555 55690 94549 94549 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 625.2797241210938 2 625.279846 1248.54514 NaN NaN NaN NaN NaN NaN NaN 40.142 1 39.845 39.345 40.345 -0.29716 0 0 0 0.67877 1 21208 21208 10.074 3.8681 1 81347 3048 54555 55690 94550 94550 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.2803344726562 2 625.279846 1248.54514 0.48965 0.00030617 0.1754 0.00010968 0.66506 0.00041585 625.279418315674 39.612 0.22651 39.624 39.528 39.755 0.011452 19 10 3 0 0 0 0.040683 1 21118 21118 49.554 26.818 1 2125200 81348 3048 54555 55690 94551 94551 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 625.2801513671875 2 625.279846 1248.54514 0.38651 0.00024168 0.22248 0.00013911 0.609 0.00038079 625.2799060439595 44.349 0.86641 39.497 38.88 39.746 -4.852 135 59 4 0 0 0 0.0081887 3 27121 26857;26984;27121 93.166 64.084 1 179960000 81349 3048 54555 55690 94552;94553;94554 94554 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MSMS AL20221201_MKP_PDAC_01 4 417.1893005371094 3 417.188989 1248.54514 0.87127 0.00036348 0.27901 0.0001164 1.1503 0.00047988 417.1890187768439 44.38 0.75969 39.528 39.215 39.975 -4.852 227 58 5 0 0 0 0.032796 1 26907 26907 42.312 29.44 1 520950000 81350 3048 54555 55690 94555 94555 -0.06919168627587169 YYDKHFTEF 9 Unmodified _YYDKHFTEF_ 0 0 0 nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A nc|ENSG00000114573|P38606-2|ATP6V1A MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 417.188989 1248.54514 0.21253 8.8664E-05 0.73327 0.00030591 0.9458 0.00039458 417.1892796703044 39.643 0.26754 39.651 39.506 39.773 0.00811 0.02515 0.00057078 NaN 42.312 38 12 4 NaN NaN NaN NaN 0 NaN NaN 0 10721000 81351 3048 54555 55690 -0.06919168627587169 YYDKSQQNF 9 Unmodified _YYDKSQQNF_ 0 0 0 REV__ENSG00000101435|ENST00000376979|CST9L REV__ENSG00000101435|ENST00000376979|CST9L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 398.1801147460938 3 398.180494 1191.51965 -0.38283 -0.00015244 -0.3751 -0.00014936 -0.75793 -0.00030179 398.1805369179774 29.256 0.34774 29.256 29.043 29.391 0 29 16 3 0 0 0 0.58466 1 15123 15123 1.1933 0 1 1198600 + 81352 18171 54556 55691 94556 94556 -0.06844643149997864 YYDLVRTEI 9 Unmodified _YYDLVRTEI_ 0 0 0 ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2 ENSG00000100485|ENST00000216373|SOS2 ENSG00000100485|ENST00000216373|SOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.3037719726562 2 586.303321 1170.59209 -0.63653 -0.0003732 -0.33435 -0.00019603 -0.97087 -0.00056923 586.3027840894134 55.722 0.13704 55.722 55.654 55.791 0 24 17 2 0 0 0 0.078314 1 30930 30930 38.176 12.776 1 6360300 81353 1835 54557 55692 94557 94557 0.01361690923590686 YYDLVRTEI 9 Unmodified _YYDLVRTEI_ 0 0 0 ENSG00000100485|ENST00000216373|SOS2;nc|ENSG00000100485|Q07890-2|SOS2 ENSG00000100485|ENST00000216373|SOS2 ENSG00000100485|ENST00000216373|SOS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.3002319335938 2 586.303321 1170.59209 -0.97261 -0.00057025 -1.8272 -0.0010713 -2.7998 -0.0016415 586.3020812493075 56.235 0.18986 55.75 55.654 55.843 -0.48554 16 9 2 0 0 0 0.026499 1 30560 30560 57.249 21.122 1 8288700 81354 1835 54557 55692 94558 94558 0.01361690923590686 YYDNLPHY 8 Unmodified _YYDNLPHY_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 543.2424926757812 2 542.740357 1083.46616 0.48536 0.00026342 1.3275 0.00072048 1.8128 0.0009839 542.7403352167908 44.338 0.27678 39.486 39.371 39.648 -4.852 46 20 3 0 0 0 0.52622 1 27054 27054 32.305 3.8186 1 15350000 81355 5547 54558 55693 94559 94559 -0.07223395861865356 YYDPHQATF 9 Unmodified _YYDPHQATF_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 571.2508544921875 2 571.251089 1140.48762 0.82523 0.00047141 -1.1595 -0.00066238 -0.33429 -0.00019096 571.2506930430734 36.654 0.49035 36.654 36.487 36.977 0 58 22 4 0 0 0 0.044011 1 19424 19424 47.749 27.295 1 18856000 81356 1869 54559 55694 94560 94560 -0.07700010833150372 YYDPHQATF 9 Unmodified _YYDPHQATF_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.2482299804688 2 571.251089 1140.48762 -0.14945 -8.5371E-05 -0.19932 -0.00011386 -0.34876 -0.00019923 571.2506933081085 36.953 0.34806 36.703 36.471 36.82 -0.2497 33 15 3 0 0 0 0.20428 1 19364 19364 22.736 6.8891 1 5869300 81357 1869 54559 55694 94561 94561 -0.07700010833150372 YYDPHQATF 9 Unmodified _YYDPHQATF_ 0 0 0 nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF nc|ENSG00000100731|Q96RV3-4|PCNX1 nc|ENSG00000100731|Q96RV3-4|PCNX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.2517700195312 2 571.251089 1140.48762 1.4193 0.00081076 -0.44284 -0.00025297 0.97642 0.00055778 571.2509537686449 41.926 0.42202 37.318 37.095 37.517 -4.6079 74 26 4 0 0 0 0.0085366 2 25136 25136;25270 90.135 59.498 1 42504000 81358 1869 54559 55694 94562;94563 94562 -0.07700010833150372 YYDPKHVIF 9 Unmodified _YYDPKHVIF_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 394.5373840332031 3 394.537842 1180.5917 0.30438 0.00012009 -0.6639 -0.00026193 -0.35951 -0.00014184 394.53744159559085 48.757 0.24647 48.385 48.311 48.558 -0.37172 32 13 3 0 0 0 0.25297 1 26177 26177 18.146 11.516 1 6149700 81359 6787 54560 55695 94564 94564 0.008623159943681458 YYDPKHVIF 9 Unmodified _YYDPKHVIF_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 394.5374450683594 3 394.537842 1180.5917 1.4406 0.00056839 -0.28094 -0.00011084 1.1597 0.00045755 394.53766145488567 53.825 0.38695 48.021 47.849 48.236 -5.8042 42 23 2 0 0 0 0.047196 2 34034 34034;34174 34.932 24.033 1 31783000 81360 6787 54560 55695 94565;94566 94565 0.008623159943681458 YYDPKHVIF 9 Unmodified _YYDPKHVIF_ 0 0 0 nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000473311.5_1_3:183906074-183911483:+|nuORF;ENST00000468892.5_1_3:183907488-183910505:+|nuORF nc|ENSG00000161204|Q9NUQ8-2|ABCF3 nc|ENSG00000161204|Q9NUQ8-2|ABCF3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.8053588867188 2 591.303124 1180.5917 1.0938 0.00064679 0.86307 0.00051034 1.9569 0.0011571 591.8051151224979 53.829 0.25613 48.025 47.944 48.2 -5.8042 22 15 2 0 0 0 0.044011 1 34081 34081 47.749 28.492 1 10430000 81361 6787 54560 55695 94567 94567 0.008623159943681458 YYDTIEDAL 9 Unmodified _YYDTIEDAL_ 0 0 0 nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-2|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 nc|ENSG00000138081|Q86XK2-6|FBXO11 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 551.7459106445312 2 551.750587 1101.48662 0.37048 0.00020441 -1.6347 -0.00090193 -1.2642 -0.00069752 551.749217274387 62.72 0.23394 62.72 62.589 62.823 0 14 9 2 0 0 0 0.21367 1 35023 35023 4.756 1.8668 1 707580 81362 5014 54561 55696 94568 94568 -0.06006269992712987 YYDVAKILI 9 Unmodified _YYDVAKILI_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ANKRD12|p.N935Kfs*25|1|0.23|ENSG00000101745|chr18:9256063-9256064|-/AA|frameshift_variant;ENST00000540578.6_1_18:9182415-9235682:+|nuORF nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 549.315673828125 2 549.3157 1096.61685 0.18734 0.00010291 1.6348 0.00089804 1.8222 0.0010009 549.8182707295905 76.292 0.29301 75.812 75.639 75.932 -0.47945 20 11 2 0 0 0 0.25681 1 41738 41738 19.257 3.1079 1 1467300 81363 1987 54562 55697 94569 94569 0.07240370796944262 YYDVAKILI 9 Unmodified _YYDVAKILI_ 0 0 0 nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENSG00000101745|ENST00000262126|ANKRD12;ANKRD12|p.N935Kfs*25|1|0.23|ENSG00000101745|chr18:9256063-9256064|-/AA|frameshift_variant;ENST00000540578.6_1_18:9182415-9235682:+|nuORF nc|ENSG00000101745|Q6UB98-2|ANKRD12 nc|ENSG00000101745|Q6UB98-2|ANKRD12 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 549.3162841796875 2 549.3157 1096.61685 0.21173 0.00011631 -0.0851 -4.6747E-05 0.12663 6.9561E-05 549.3157910022124 75.748 0.23926 75.796 75.649 75.888 0.047943 16 10 2 0 0 0 0.07087 1 41791 41791 39.95 18.413 1 2206900 81364 1987 54562 55697 94570 94570 0.07240370796944262 YYDVAKQLL 9 Unmodified _YYDVAKQLL_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.8036499023438 2 556.802957 1111.59136 0.44577 0.0002482 1.6546 0.00092129 2.1004 0.0011695 556.8038880612618 58.678 0.23733 58.678 58.511 58.748 0 23 9 3 0 0 0 0.19361 1 32701 32701 32.305 19.774 1 2111700 81365 7620 54563 55698 94571 94571 0.040028962745282115 YYDVAKQLL 9 Unmodified _YYDVAKQLL_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 556.8038330078125 2 556.802957 1111.59136 0.50373 0.00028048 0.30532 0.00017 0.80905 0.00045048 556.8031961618278 59.118 0.42303 58.627 58.369 58.792 -0.49079 66 19 5 0 0 0 0.030212 2 32126 32126;32223 69.105 36.799 1 34326000 81366 7620 54563 55698 94572;94573 94572 0.040028962745282115 YYDVAKQLL 9 Unmodified _YYDVAKQLL_ 0 0 0 ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ENST00000378332.6_1_16:89353515-89371640:-|nuORF;ENST00000562275.5_1_16:89354878-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF ENST00000330736.9_1_16:89334888-89371640:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.3059692382812 2 556.802957 1111.59136 0.79299 0.00044154 1.0503 0.0005848 1.8433 0.0010263 556.8033860965713 65.068 0.71817 58.892 58.644 59.362 -6.1757 98 39 3 0 0 0 0.016448 3 42397 42133;42266;42397 82.529 38.671 1 100800000 81367 7620 54563 55698 94574;94575;94576 94576 0.040028962745282115 YYDVKFNFL 9 Unmodified _YYDVKFNFL_ 0 0 0 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 ENSG00000175782|ENST00000398004|SLC35E3 MSMS AL20221201_MKP_PDAC_01 4 604.802734375 2 604.802957 1207.59136 NaN NaN NaN NaN NaN NaN NaN 94.525 1 88.349 87.849 88.849 -6.1757 0 0 0 0.022863 1 62609 62609 74.929 36.955 1 81368 8540 54564 55699 94577 94577 -0.0041310372548650776 YYDYVMAP 8 Unmodified _YYDYVMAP_ 0 0 0 REV__ENST00000540982.1_1_12:9550954-9555054:-|nuORF REV__ENST00000540982.1_1_12:9550954-9555054:-|nuORF MULTI-SECPEP AL20221201_MKP_PDAC_01 4 510.7616577148438 2 511.220411 1020.42627 0.90056 0.00046038 -1.8743 -0.00095817 -0.97372 -0.00049779 511.21954704077325 55.002 0.29007 49.081 48.903 49.193 -5.9211 35 17 3 0 0 0 8.7369 1 34916 34916 2.8892 0.31174 1 25190000 + 81369 28275 54565 55700 94578 94578 -0.08312658856789312 YYEAWAMTY 9 Unmodified _YYEAWAMTY_ 0 0 0 REV__ENSG00000107164|ENST00000319725|FUBP3 REV__ENSG00000107164|ENST00000319725|FUBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.2489013671875 2 599.2497 1196.48485 -0.12347 -7.3987E-05 -0.61834 -0.00037054 -0.74181 -0.00044453 599.2493999701047 35.807 0.24305 35.807 35.635 35.878 0 26 11 3 0 0 0 0.2001 1 18933 18933 23.148 2.6948 1 5575300 + 81370 18553 54566 55701 94579 94579 -0.10553602282311658 YYECDPGYVLN 11 Unmodified _YYECDPGYVLN_ 0 0 0 ENSG00000165124|ENST00000374469|SVEP1;nc|ENSG00000165124|Q4LDE5-3|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 ENSG00000165124|ENST00000374469|SVEP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 668.281005859375 2 668.281728 1334.5489 0.5681 0.00037965 -3.0793 -0.0020578 -2.5112 -0.0016782 668.279931690995 46.502 0.2162 46.166 46.034 46.25 -0.33664 16 10 2 0 0 0 0.71036 1 24897 24897 3.2813 0.28607 1 3334500 81371 7297 54567 55702 94580 94580 -0.1049886691600932 YYEEDLDKY 9 Unmodified _YYEEDLDKY_ 0 0 0 REV__ENSG00000143515|ENST00000368489|ATP8B2 REV__ENSG00000143515|ENST00000368489|ATP8B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 619.26904296875 2 619.266601 1236.51865 0.098996 6.1305E-05 1.0868 0.00067304 1.1858 0.00073435 619.2670937186257 70.515 0.39891 70.515 70.356 70.755 0 39 21 3 0 0 0 0.58466 1 39255 39255 2.3027 0.24298 1 1397000 + 81372 20648 54568 55703 94581 94581 -0.09014902309559147 YYEEESCMRYL 11 Carbamidomethyl (C),Oxidation (M) _YYEEESC(Carbamidomethyl (C))M(Oxidation (M))RYL_ YYEEESC(1)MRYL YYEEESCM(1)RYL YYEEESC(65)MRYL YYEEESCM(65)RYL 0 1 1 ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 779.811767578125 2 779.813067 1557.61158 0.76379 0.00059561 -0.067671 -5.2771E-05 0.69612 0.00054284 779.8132598234287 43.89 0.25314 39.125 38.967 39.22 -4.7648 26 15 2 0 0 0 0.012739 1 26721 26721 64.927 45.565 1 8317000 81373 5248 54569 55704 94582 94582 540 965 -0.14492088910128587 YYEEESCMRYL 11 Carbamidomethyl (C) _YYEEESC(Carbamidomethyl (C))MRYL_ YYEEESC(1)MRYL YYEEESC(100)MRYL 0 1 0 ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF ENSG00000140526|ENST00000352732|ABHD2 ENSG00000140526|ENST00000352732|ABHD2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 771.8172607421875 2 771.815609 1541.61667 0.76936 0.0005938 0.37965 0.00029302 1.149 0.00088682 772.3168854167135 55.843 0.28727 49.922 49.737 50.024 -5.9211 29 16 2 0 0 0 2.5626E-06 1 35528 35528 100.71 65.777 1 14974000 81374 5248 54569 55705 94583 94583 540 -0.13247785047542493 YYEEFPINL 9 Unmodified _YYEEFPINL_ 0 0 0 ENSG00000141012|ENST00000268695|GALNS;ENST00000568613.5_1_16:88880849-88909575:-|nuORF ENSG00000141012|ENST00000268695|GALNS ENSG00000141012|ENST00000268695|GALNS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.2848510742188 2 594.284597 1186.55464 0.54681 0.00032496 -0.026729 -1.5885E-05 0.52008 0.00030907 594.2842397496969 87.374 0.23804 86.87 86.708 86.946 -0.50423 12 9 2 0 0 0 0.48152 2 47800 47745;47800 8.5933 3.8373 1 306820 81375 5297 54570 55706 94584;94585 94585 -0.031174003420346708 YYEELPAY 8 Unmodified _YYEELPAY_ 0 0 0 REV__ENSG00000137338|ENST00000682144|PGBD1 REV__ENSG00000137338|ENST00000682144|PGBD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 524.2373657226562 2 524.237116 1046.45968 0.58414 0.00030623 1.167 0.0006118 1.7512 0.00091803 524.2373524935223 73.335 0.36699 72.859 72.651 73.018 -0.47588 29 16 2 0 0 0 0.77907 1 40114 40114 10.183 4.423 1 2156600 + 81376 20235 54571 55707 94586 94586 -0.0616933381322724 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.267333984375 2 604.266936 1206.51932 -0.85095 -0.0005142 -1.1352 -0.00068595 -1.9861 -0.0012001 604.2663411530076 34.134 1.1527 34.134 33.864 35.016 0 184 59 6 0 0 0 0.0086904 5 17850 17850;17957;18071;18189;18296 107.19 63.415 1 4694300000 81377 394 54572 55708 94587;94588;94589;94590;94591 94587 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2643432617188 2 604.266936 1206.51932 -0.65407 -0.00039523 -1.8086 -0.0010929 -2.4627 -0.0014881 604.2660137575731 35.081 0.24837 35.081 35.016 35.265 0 20 12 2 0 0 0 0.07087 1 18585 18585 39.95 22.837 1 2821900 81378 394 54572 55708 94592 94592 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 604.2669677734375 2 604.266936 1206.51932 -0.052063 -3.146E-05 -0.49748 -0.00030061 -0.54954 -0.00033207 604.266440578246 39.447 0.25154 39.447 39.302 39.553 0 21 11 2 0 0 0 0.028475 1 21131 21131 56.177 30.778 1 2932700 81379 394 54572 55708 94593 94593 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2667236328125 2 604.266936 1206.51932 -0.27944 -0.00016885 0.14042 8.485E-05 -0.13902 -8.4005E-05 604.2669297627605 34.318 0.36162 34.127 33.865 34.226 -0.19132 44 13 4 0 0 0 0.009483 2 17859 17859;17972 81.89 56.491 1 25839000 81380 394 54572 55708 94594;94595 94594 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.2660522460938 2 604.266936 1206.51932 NaN NaN NaN NaN NaN NaN NaN 16.661 1 16.662 16.162 17.162 0.0010548 0 0 0 0.85737 1 8229 8229 0.6015 0 1 81381 394 54572 55708 94596 94596 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 604.7689208984375 2 604.266936 1206.51932 -0.574 -0.00034685 1.1019 0.00066584 0.5279 0.00031899 604.769410088464 16.439 0.032038 16.44 16.418 16.45 0.0010548 11 10 2 0 0 0 0.21834 1 8112 8112 1.8442 0 1 359800 81382 394 54572 55708 94597 94597 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 604.2666015625 2 604.266936 1206.51932 0.088929 5.3737E-05 -0.22675 -0.00013702 -0.13783 -8.3283E-05 604.2667631485716 34.019 0.36665 34.047 33.859 34.225 0.028934 50 16 4 0 0 0 0.0085164 2 17969 17867;17969 99.799 59.849 1 36411000 81383 394 54572 55708 94598;94599 94599 -0.07568062869859205 YYEEQHPEL 9 Unmodified _YYEEQHPEL_ 0 0 0 ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;nc|ENSG00000008517|P24001-4|IL32 ENSG00000008517|ENST00000525643|IL32 ENSG00000008517|ENST00000525643|IL32 MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.267578125 2 604.266936 1206.51932 -0.13724 -8.293E-05 -0.72164 -0.00043607 -0.85889 -0.000519 604.2663199736246 38.65 1.1135 34.281 33.932 35.046 -4.3689 274 70 6 0 0 0 0.0047067 6 22636 22636;22767;22902;23026;23158;23308 118.07 78.119 1 5118700000 81384 394 54572 55708 94600;94601;94602;94603;94604;94605 94600 -0.07568062869859205 YYEEVVYVL 9 Unmodified _YYEEVVYVL_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.7975463867188 2 588.794798 1175.57504 0.090964 5.3559E-05 1.0462 0.000616 1.1372 0.00066956 588.7952744236017 81.155 0.48339 81.155 80.911 81.394 0 64 22 4 0 0 0 0.14602 2 44999 44999;45100 28.487 21.198 1 2738900 81385 2589 54573 55709 94606;94607 94606 -0.005722296822341377 YYEEVVYVL 9 Unmodified _YYEEVVYVL_ 0 0 0 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 ENSG00000108602|ENST00000225740|ALDH3A1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.793701171875 2 588.794798 1175.57504 0.68595 0.00040389 0.80791 0.00047569 1.4939 0.00087958 588.7957326575219 81.669 0.41894 81.173 80.95 81.369 -0.4952 41 15 4 0 0 0 0.087258 2 44676 44676;44780 36.044 28.755 1 2317000 81386 2589 54573 55709 94608;94609 94608 -0.005722296822341377 YYEHEFVEL 9 Unmodified _YYEHEFVEL_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B nc|ENSG00000166377|O43861-2|ATP9B nc|ENSG00000166377|O43861-2|ATP9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 614.7804565429688 2 614.779679 1227.5448 0.65399 0.00040206 -0.031593 -1.9422E-05 0.6224 0.00038264 614.7795846820217 57.081 0.29896 57.081 56.922 57.221 0 29 12 3 0 0 0 0.070838 1 31747 31747 39.957 14.966 1 4911800 81387 7479 54574 55710 94610 94610 -0.05986588347423094 YYEHEFVEL 9 Unmodified _YYEHEFVEL_ 0 0 0 nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B nc|ENSG00000166377|O43861-2|ATP9B nc|ENSG00000166377|O43861-2|ATP9B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.2811889648438 2 614.779679 1227.5448 0.55688 0.00034236 -1.1569 -0.00071125 -0.60005 -0.0003689 614.7784905278309 57.569 0.20297 57.079 57.003 57.206 -0.48974 13 9 2 0 0 0 0.41742 1 31296 31296 11.64 2.2572 1 2140200 81388 7479 54574 55710 94611 94611 -0.05986588347423094 YYEHRYQGKMF 11 Unmodified _YYEHRYQGKMF_ 0 0 0 ENSG00000138622|ENST00000261917|HCN4;ENSG00000099822|ENST00000251287|HCN2;ENST00000568218.2_1_15:32605934-32606516:-|nuORF;ENSG00000143630|ENST00000368358|HCN3;ENST00000467204.1_1_1:155252337-155256975:+|nuORF;ENST00000496230.5_1_1:155254296-155257077:+|nuORF ENSG00000138622|ENST00000261917|HCN4 ENSG00000138622|ENST00000261917|HCN4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 761.352294921875 2 761.350811 1520.68707 -0.0074026 -5.636E-06 -0.47542 -0.00036196 -0.48282 -0.00036759 761.3504608327669 79.174 0.46507 79.174 78.929 79.394 0 48 20 3 0 0 0 0.74157 1 43892 43892 0.35063 0 1 1074800 81389 5072 54575 55711 94612 94612 -0.05244698876936127 YYEHVKARF 9 Unmodified _YYEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 404.8770141601562 3 404.876857 1211.60874 -0.36702 -0.0001486 0.86084 0.00034853 0.49382 0.00019994 404.87715706260053 23.315 0.24466 23.315 23.182 23.427 0 46 11 5 0 0 0 0.076472 1 11852 11852 38.615 31.513 1 13371000 81390 3148 54576 55712 94613 94613 0.011402366001675546 YYEHVKARF 9 Unmodified _YYEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 404.8770141601562 3 404.876857 1211.60874 0.016938 6.8579E-06 -0.40714 -0.00016484 -0.3902 -0.00015798 404.8766486670408 23.41 0.34854 23.422 23.279 23.628 0.012396 55 17 5 0 0 0 0.076472 2 11906 11906;12011 38.615 27.815 1 192550000 81391 3148 54576 55712 94614;94615 94614 0.011402366001675546 YYEHVKARF 9 Unmodified _YYEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 404.8776245117188 3 404.876857 1211.60874 -0.041914 -1.697E-05 -0.57889 -0.00023438 -0.6208 -0.00025135 404.87667275068355 23.257 0.29967 23.275 23.116 23.415 0.01749 45 14 5 0 0 0 0.076472 1 11932 11932 38.615 23.366 1 148730000 81392 3148 54576 55712 94616 94616 0.011402366001675546 YYEHVKARF 9 Unmodified _YYEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.8763427734375 3 404.876857 1211.60874 0.32744 0.00013257 -0.729 -0.00029516 -0.40156 -0.00016258 404.87644151493225 26.222 0.83427 23.271 22.969 23.803 -2.9511 156 46 6 0 0 0 0.053952 3 14282 14282;14395;14513 43.982 36.88 1 1535499999.9999998 81393 3148 54576 55712 94617;94618;94619 94617 0.011402366001675546 YYEHVKARF 9 Unmodified _YYEHVKARF_ 0 0 0 nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH nc|ENSG00000115648|Q9BV36-5|MLPH MULTI-MSMS AL20221201_MKP_PDAC_01 4 606.8111572265625 2 606.811648 1211.60874 -0.10583 -6.4217E-05 -0.41725 -0.00025319 -0.52308 -0.00031741 606.8114879495445 26.229 0.39559 23.278 23.063 23.459 -2.9511 68 22 4 0 0 0 0.011739 2 14320 14320;14442 82.529 68.623 1 64833000 81394 3148 54576 55712 94620;94621 94620 0.011402366001675546 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 421.8728637695312 3 421.873001 1262.59717 -0.21019 -8.8673E-05 0.22493 9.4893E-05 0.014745 6.2205E-06 421.8730464914865 44.442 0.36412 44.127 43.982 44.346 -0.31585 85 23 5 0 0 0 0.0085386 2 23652 23652;23752 100.09 72.867 1 937160000 81395 4412 54577 55713 94622;94623 94622 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.3035278320312 2 632.305864 1262.59717 -0.51605 -0.0003263 0.038381 2.4269E-05 -0.47767 -0.00030203 632.8073680000446 44.454 0.3046 44.138 43.982 44.287 -0.31585 60 20 4 0 0 0 0.0040067 2 23676 23676;23774 110.67 70.717 1 205880000 81396 4412 54577 55713 94624;94625 94624 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2070922851562 3 421.873001 1262.59717 0.098393 4.151E-05 0.076236 3.2162E-05 0.17463 7.3671E-05 421.87300005079203 44.083 0.3492 44.061 43.932 44.281 -0.022064 82 24 4 0 0 0 0.040733 2 23591 23591;23691 49.527 26.869 1 580690000 81397 4412 54577 55713 94626;94627 94626 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.3059692382812 2 632.305864 1262.59717 0.15383 9.7266E-05 -0.14209 -8.9845E-05 0.011736 7.4208E-06 632.3057142341717 44.081 0.2965 44.059 43.944 44.241 -0.022064 64 21 4 0 0 0 0.0081 2 23706 23603;23706 114.65 82.344 1 202590000 81398 4412 54577 55713 94628;94629 94629 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.20751953125 3 421.873001 1262.59717 0.98423 0.00041522 0.11043 4.6589E-05 1.0947 0.00046181 421.87303224572645 49.128 0.70118 43.731 43.441 44.143 -5.3961 173 45 5 0 0 0 0.0088668 4 30501 30501;30629;30767;30892 87.258 70.692 1 2132099999.9999998 81399 4412 54577 55713 94630;94631;94632;94633 94630 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8075561523438 2 632.305864 1262.59717 0.52017 0.00032891 0.062853 3.9742E-05 0.58302 0.00036865 632.3058419270844 49.126 0.70118 43.73 43.441 44.143 -5.3961 161 45 5 0 0 0 0.0040067 4 30895 30509;30640;30778;30895 134.3 108.9 1 1525599999.9999998 81400 4412 54577 55713 94634;94635;94636;94637 94637 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2077331542969 3 421.873001 1262.59717 1.4383 0.00060676 -0.38997 -0.00016452 1.0483 0.00044225 421.8729270625378 50.213 0.29229 44.674 44.483 44.775 -5.5391 27 18 2 0 0 0 0.060956 1 31386 31386 42.312 29.44 1 18752000 81401 4412 54577 55713 94638 94638 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2081604003906 3 421.873001 1262.59717 1.162 0.00049021 -0.024333 -1.0266E-05 1.1377 0.00047994 421.87301555828924 53.418 0.69133 47.614 47.267 47.958 -5.8042 119 43 3 0 0 0 0.020316 4 33572 33572;33695;33829;33982 63.227 41.637 1 82793000 81402 4412 54577 55713 94639;94640;94641;94642 94639 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3065795898438 2 632.305864 1262.59717 0.36702 0.00023207 0.22404 0.00014166 0.59107 0.00037374 632.3057130431869 53.233 0.21151 47.429 47.318 47.529 -5.8042 19 12 2 0 0 0 0.0085526 1 33636 33636 106.94 81.541 1 30262000 81403 4412 54577 55713 94643 94643 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3062133789062 2 632.305864 1262.59717 0.78206 0.0004945 0.13181 8.3346E-05 0.91387 0.00057785 632.3056549061498 53.486 0.3655 47.682 47.498 47.863 -5.8042 41 23 2 0 0 0 0.0088735 1 33772 33772 125.53 89.023 1 36211000 81404 4412 54577 55713 94644 94644 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 421.8742065429688 3 421.873001 1262.59717 1.4624 0.00061695 0.99474 0.00041965 2.4572 0.0010366 421.8734754156153 53.907 1.1879 48.042 47.857 49.045 -5.8653 163 72 3 0 0 0 0.12357 3 34264 34120;34264;34407 30.703 13.261 1 68609000 81405 4412 54577 55713 94645;94646;94647 94646 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3067016601562 2 632.305864 1262.59717 0.71416 0.00045157 0.22481 0.00014215 0.93897 0.00059371 632.3059561334286 54.449 0.48978 48.584 48.469 48.959 -5.8653 43 30 2 0 0 0 0.0091809 1 34783 34783 92.653 52.696 1 14341000 81406 4412 54577 55713 94648 94648 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2078247070312 3 421.873001 1262.59717 0.87598 0.00036955 0.093332 3.9374E-05 0.96931 0.00040893 421.8729576954498 56.736 1.2011 50.759 50.515 51.716 -5.9769 205 68 5 0 0 0 0.024189 6 36143 36143;36275;36409;36555;36695;36818 59.368 36.71 1 451650000 81407 4412 54577 55713 94649;94650;94651;94652;94653;94654 94649 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3053588867188 2 632.305864 1262.59717 0.40961 0.000259 0.0084464 5.3407E-06 0.41806 0.00026434 632.305831806556 56.76 0.84149 50.783 50.581 51.423 -5.9769 107 48 3 0 0 0 0.0033237 4 36150 36150;36276;36411;36585 137.42 112.02 1 165400000 81408 4412 54577 55713 94655;94656;94657;94658 94655 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 421.8734741210938 3 421.873001 1262.59717 NaN NaN NaN NaN NaN NaN NaN 50.808 1 45.159 44.659 45.659 -5.649 0 0 0 0.061161 1 31915 31915 53.404 24.909 1 81409 4412 54577 55713 94659 94659 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 421.8729553222656 3 421.873001 1262.59717 NaN NaN NaN NaN NaN NaN NaN 51.392 1 45.743 45.243 46.243 -5.649 0 0 0 0.13463 1 32337 32337 38.615 15.957 1 81410 4412 54577 55713 94660 94660 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 421.8734436035156 3 421.873001 1262.59717 NaN NaN NaN NaN NaN NaN NaN 54.665 1 48.799 48.299 49.299 -5.8653 0 0 0 0.73776 1 34702 34702 8.1555 5.0833 1 81411 4412 54577 55713 94661 94661 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 421.8736267089844 3 421.873001 1262.59717 NaN NaN NaN NaN NaN NaN NaN 55.055 1 49.134 48.634 49.634 -5.9211 0 0 0 0.3031 1 34997 34997 24.991 4.41 1 81412 4412 54577 55713 94662 94662 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MSMS AL20221201_MKP_PDAC_01 4 421.8735656738281 3 421.873001 1262.59717 NaN NaN NaN NaN NaN NaN NaN 55.277 1 49.356 48.856 49.856 -5.9211 0 0 0 0.06887 1 35169 35169 51.415 20.147 1 81413 4412 54577 55713 94663 94663 -0.023620052138085157 YYEKLHTYF 9 Unmodified _YYEKLHTYF_ 0 0 0 nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;nc|ENSG00000132470|P16144-4|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 nc|ENSG00000132470|P16144-2|ITGB4 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 421.873001 1262.59717 -0.14442 -6.0926E-05 0.67774 0.00028592 0.53333 0.000225 421.8732581619655 44.205 0.27427 44.205 44.051 44.325 0 0.17401 0.00061401 NaN 100.09 30 13 4 NaN NaN NaN NaN 0 NaN NaN 0 32495000 81414 4412 54577 55713 -0.023620052138085157 YYEKQFPEI 9 Unmodified _YYEKQFPEI_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 608.7991943359375 2 608.797872 1215.58119 0.19737 0.00012016 0.43844 0.00026692 0.63582 0.00038708 608.7980207619513 51.622 0.36553 51.622 51.412 51.777 0 51 16 4 0 0 0 0.0033077 2 28471 28471;28593 125.04 73.408 1 28450000 81415 5298;9828 54578 55714 94664;94665 94664 -0.017977114506948055 YYEKQFPEI 9 Unmodified _YYEKQFPEI_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 608.7976684570312 2 608.797872 1215.58119 0.57339 0.00034908 -1.5199 -0.00092528 -0.94646 -0.0005762 608.7967575151254 52.167 0.41074 51.733 51.531 51.942 -0.43367 63 20 4 0 0 0 0.0081887 2 28118 28118;28219 93.166 58.234 1 15444000 81416 5298;9828 54578 55714 94666;94667 94666 -0.017977114506948055 YYEKQFPEI 9 Unmodified _YYEKQFPEI_ 0 0 0 nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2 nc|ENSG00000141027|O75376-2|NCOR1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 608.7975463867188 2 608.797872 1215.58119 0.80519 0.0004902 0.8502 0.0005176 1.6554 0.0010078 608.7983576382302 57.562 0.5105 51.534 51.277 51.787 -6.0275 78 27 4 0 0 0 0.0033077 2 36708 36708;36828 125.04 81.265 1 111720000 81417 5298;9828 54578 55714 94668;94669 94668 -0.017977114506948055 YYELLAQYI 9 Unmodified _YYELLAQYI_ 0 0 0 REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3043212890625 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 94.124 1 94.139 93.639 94.639 0.014244 0 0 0 0.70111 1 52315 52315 9.3474 4.1168 1 + 81418 19843 54579 55715 94670 94670 0.010714765546708804 YYEMCWYVL 9 Unmodified _YYEMCWYVL_ 0 0 0 nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;nc|ENSG00000089094|Q8NHM5-5|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B nc|ENSG00000173120|Q9Y2K7-3|KDM2A;nc|ENSG00000089094|Q8NHM5-5|KDM2B nc|ENSG00000173120|Q9Y2K7-3|KDM2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 635.272705078125 2 635.269578 1268.5246 NaN NaN NaN NaN NaN NaN NaN 77.491 1 77.491 76.991 77.991 0 0 0 0 0.84564 1 43078 43078 2.0598 0.40713 1 81419 8288;1514 54580 55716 94671 94671 -0.09891798603257485 YYENEKKWRHK 11 Unmodified _YYENEKKWRHK_ 0 0 0 ENSG00000169047|ENST00000305123|IRS1;IRS1|p.R857Gfs*86|1|0.12|ENSG00000169047|chr2:226796170-226796170|G/-|frameshift_variant ENSG00000169047|ENST00000305123|IRS1 ENSG00000169047|ENST00000305123|IRS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 790.9002075195312 2 790.902057 1579.78956 NaN NaN NaN NaN NaN NaN NaN 83.92 1 83.983 83.483 84.483 0.063171 0 0 0 0.94301 1 46431 46431 0.35063 0.043601 1 81420 7828 54581 55717 94672 94672 0.022857101861973206 YYEPSCTQN 9 Unmodified _YYEPSCTQN_ 0 0 0 nc|ENSG00000163131|P25774-2|CTSS;ENSG00000163131|ENST00000368985|CTSS nc|ENSG00000163131|P25774-2|CTSS nc|ENSG00000163131|P25774-2|CTSS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8149719238281 3 368.814935 1103.42298 -0.57256 -0.00021117 1.2729 0.00046947 0.70037 0.00025831 368.81522995651613 34.855 0.80017 34.855 34.289 35.09 0 75 41 2 0 0 0 0.52067 2 18389 18389;18503 6.6304 1.7334 1 6687200 81421 6957 54582 55718 94673;94674 94673 -0.12459953701431914 YYESYRYF 8 Unmodified _YYESYRYF_ 0 0 0 nc|ENSG00000032742|Q13099-3|IFT88;ENSG00000032742|ENST00000351808|IFT88;nc|ENSG00000032742|Q13099-1|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 nc|ENSG00000032742|Q13099-3|IFT88 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 596.2979736328125 2 595.761289 1189.50803 0.081383 4.8485E-05 -3.9753 -0.0023683 -3.8939 -0.0023198 595.7592571386198 38.495 0.28211 34.126 33.964 34.246 -4.3689 24 17 2 0 0 0 8.7369 1 22735 22735 12.532 6.3258 1 10310000 81422 594 54583 55719 94675 94675 -0.07914840173339144 YYEVHKELF 9 Unmodified _YYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8728942871094 3 409.873001 1226.59717 -0.38067 -0.00015603 0.68633 0.00028131 0.30565 0.00012528 409.87328632355275 41.776 0.23607 41.776 41.645 41.881 0 29 11 3 0 0 0 0.082934 1 22550 22550 37.075 16.66 1 7680700 81423 16497 54584 55720 94676 94676 -0.007060052138058381 YYEVHKELF 9 Unmodified _YYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 409.8726196289062 3 409.873001 1226.59717 -0.16752 -6.8662E-05 0.31201 0.00012789 0.14449 5.9224E-05 409.8730673238791 42.033 0.22021 41.726 41.597 41.817 -0.30682 27 10 3 0 0 0 0.069655 1 22287 22287 40.239 17.503 1 21221000 81424 16497 54584 55720 94677 94677 -0.007060052138058381 YYEVHKELF 9 Unmodified _YYEVHKELF_ 0 0 0 nc|ENSG00000198901|O43663-3|PRC1;nc|ENSG00000198901|O43663-4|PRC1;ENSG00000198901|ENST00000394249|PRC1;nc|ENSG00000198901|O43663-2|PRC1 nc|ENSG00000198901|O43663-3|PRC1 nc|ENSG00000198901|O43663-3|PRC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 409.8739013671875 3 409.873001 1226.59717 0.59114 0.00024229 -0.12467 -5.1098E-05 0.46647 0.00019119 409.87304861231627 46.478 0.26931 41.397 41.189 41.458 -5.0805 57 22 3 0 0 0 0.18255 1 28615 28615 24.882 14.082 1 73202000 81425 16497 54584 55720 94678 94678 -0.007060052138058381 YYEYEFMEL 9 Unmodified _YYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 643.9676513671875 2 643.767923 1285.52129 0.29591 0.0001905 0.65671 0.00042277 0.95262 0.00061327 643.7682468467024 87.348 0.26501 86.844 86.681 86.946 -0.50423 16 10 2 0 0 0 0.58865 1 47815 47815 2.0598 0.73022 1 412680 81426 765 54585 55721 94679 94679 -0.11004770176236889 YYEYEFMEL 9 Unmodified _YYEYEFMEL_ 0 0 0 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.76806640625 2 643.767923 1285.52129 1.096 0.00070557 -0.34446 -0.00022176 0.75154 0.00048381 643.767241746666 96.415 0.42993 90.239 89.974 90.404 -6.1757 33 25 2 0 0 0 0.095405 1 63804 63804 34.102 12.356 1 10849000 81427 765 54585 55721 94680 94680 -0.11004770176236889 YYEYEFMEL 9 Oxidation (M) _YYEYEFM(Oxidation (M))EL_ YYEYEFM(1)EL YYEYEFM(42)EL 0 0 1 ENSG00000054793|ENST00000338821|ATP9A;nc|ENSG00000054793|O75110-2|ATP9A ENSG00000054793|ENST00000338821|ATP9A ENSG00000054793|ENST00000338821|ATP9A MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.2666015625 2 651.76538 1301.51621 0.60182 0.00039224 -0.70778 -0.00046131 -0.10596 -6.9062E-05 651.7652841544333 78.131 0.31604 71.955 71.773 72.089 -6.1757 25 17 2 0 0 0 0.06187 1 51102 51102 42.095 23.948 1 15140000 81428 765 54585 55722 94681 94681 119 -0.12249074038868457 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 632.2676391601562 2 632.269478 1262.5244 0.48338 0.00030563 -0.049927 -3.1568E-05 0.43346 0.00027406 632.269316106017 53.779 0.38444 53.779 53.584 53.968 0 50 17 4 0 0 0 0.030212 2 29776 29776;29885 60.074 41.928 1 20063000 81429 6145 54586 55723 94682;94683 94682 -0.09635759007255729 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.2697143554688 2 632.269478 1262.5244 -0.17455 -0.00011036 -0.80305 -0.00050775 -0.9776 -0.00061811 632.2688662607551 54.327 0.33707 53.861 53.707 54.044 -0.46664 55 17 4 0 0 0 0.044042 2 29391 29391;29493 60.074 47.031 1 54380000 81430 6145 54586 55723 94684;94685 94684 -0.09635759007255729 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 632.2696533203125 2 632.269478 1262.5244 -0.13649 -8.6296E-05 0.52117 0.00032952 0.38469 0.00024323 632.7713137791367 53.947 0.25591 53.88 53.765 54.021 -0.066936 26 12 3 0 0 0 0.171 1 29285 29285 34.402 18.555 1 3071600 81431 6145 54586 55723 94686 94686 -0.09635759007255729 YYEYNHDLF 9 Unmodified _YYEYNHDLF_ 0 0 0 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 ENSG00000151748|ENST00000324679|SAV1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.2693481445312 2 632.269478 1262.5244 0.78461 0.00049608 -0.10107 -6.3904E-05 0.68354 0.00043218 632.2693428677563 60.047 0.59082 53.933 53.665 54.256 -6.1147 94 31 4 0 0 0 0.0083595 3 38461 38461;38592;38720 118.07 95.332 1 201340000 81432 6145 54586 55723 94687;94688;94689 94687 -0.09635759007255729 YYFCRWYRNRK 11 Unmodified _YYFCRWYRNRK_ 0 0 0 ENST00000503689.1_1_4:75248329-75250522:+|nuORF;ENSG00000124882|ENST00000244869|EREG ENST00000503689.1_1_4:75248329-75250522:+|nuORF ENST00000503689.1_1_4:75248329-75250522:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 827.9065551757812 2 827.906619 1653.79869 NaN NaN NaN NaN NaN NaN NaN 93.873 1 93.873 93.373 94.373 0 0 0 0 0.9435 1 51895 51895 0 0 1 81433 3824 54587 55724 94690 94690 -0.0020621972910248587 YYFDAAEAEAW 11 Unmodified _YYFDAAEAEAW_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 668.2794189453125 2 668.280043 1334.54553 NaN NaN NaN NaN NaN NaN NaN 74.896 1 74.896 74.396 75.396 0 0 0 0 0.9385 1 41669 41669 3.5965 1.7523 1 81434 3108 54588 55725 94691 94691 -0.10835793698379348 YYFDAAEAEAW 11 Unmodified _YYFDAAEAEAW_ 0 0 0 ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 ENSG00000115306|ENST00000356805|SPTBN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 668.2802734375 2 668.280043 1334.54553 0.59623 0.00039845 -0.9706 -0.00064863 -0.37437 -0.00025018 668.2791753423755 83.074 0.29984 76.898 76.808 77.108 -6.1757 35 16 3 0 0 0 0.014934 1 54613 54613 62.573 44.426 1 11497000 81435 3108 54588 55725 94692 94692 -0.10835793698379348 YYFDSYAHF 9 Unmodified _YYFDSYAHF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7533569335938 2 606.753464 1211.49238 0.054263 3.2924E-05 0.76478 0.00046403 0.81904 0.00049696 607.2555543370612 61.616 0.23456 61.128 60.988 61.222 -0.48764 16 10 2 0 0 0 0.12841 1 33596 33596 30.225 17.693 1 1499600 81436 3948 54589 55726 94693 94693 -0.104911266903855 YYFDSYAHF 9 Unmodified _YYFDSYAHF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 606.7532958984375 2 606.753464 1211.49238 0.59617 0.00036173 0.36437 0.00022108 0.96053 0.00058281 606.7535460597815 64.097 0.32768 63.612 63.473 63.8 -0.48512 38 15 3 0 0 0 0.013472 1 34948 34948 70.716 47.567 1 6520800 81437 3948 54589 55726 94694 94694 -0.104911266903855 YYFDSYAHF 9 Unmodified _YYFDSYAHF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 606.7548217773438 2 606.753464 1211.49238 0.81128 0.00049225 0.96452 0.00058523 1.7758 0.0010775 606.754022342242 63.653 0.25073 63.642 63.532 63.783 -0.010532 25 11 3 0 0 0 0.03327 1 34849 34849 53.576 36.633 1 4332800 81438 3948 54589 55726 94695 94695 -0.104911266903855 YYFDSYAHF 9 Unmodified _YYFDSYAHF_ 0 0 0 nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF nc|ENSG00000126457|Q99873-2|PRMT1 nc|ENSG00000126457|Q99873-2|PRMT1 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 606.7997436523438 2 606.753464 1211.49238 0.78578 0.00047678 -0.80979 -0.00049134 -0.024007 -1.4566E-05 606.7531539121028 71.051 0.55543 64.875 64.596 65.151 -6.1757 47 27 3 0 0 0 0.13712 1 46268 46268 30.225 17.693 1 21536000 81439 3948 54589 55726 94696 94696 -0.104911266903855 YYFDYKEQL 9 Unmodified _YYFDYKEQL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.7935180664062 2 634.795329 1267.5761 -0.36389 -0.000231 -0.93202 -0.00059164 -1.2959 -0.00082264 634.7946064075462 55.225 0.24071 55.225 55.126 55.367 0 18 10 2 0 0 0 0.2324 1 30684 30684 20.415 6.5085 1 2671200 81440 1696 54590 55727 94697 94697 -0.046980153133290514 YYFDYKEQL 9 Unmodified _YYFDYKEQL_ 0 0 0 ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF ENSG00000099341|ENST00000215071|PSMD8 ENSG00000099341|ENST00000215071|PSMD8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.7924194335938 2 634.795329 1267.5761 -0.56129 -0.00035631 -1.4596 -0.00092656 -2.0209 -0.0012829 634.793584558808 55.931 0.17877 55.453 55.36 55.538 -0.47798 20 8 3 0 0 0 0.08691 1 30357 30357 36.127 19.014 1 3130500 81441 1696 54590 55727 94698 94698 -0.046980153133290514 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 648.31884765625 2 648.318971 1294.62339 -0.079132 -5.1303E-05 -0.23945 -0.00015524 -0.31859 -0.00020654 648.3187364372209 61.71 0.24888 61.71 61.572 61.821 0 27 10 3 0 0 0 0.0015761 1 34383 34383 110.67 85.275 1 3877800 81442 1846 54591 55728 94699 94699 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 648.3186645507812 2 648.318971 1294.62339 0.629 0.00040779 -0.31752 -0.00020585 0.31148 0.00020194 648.3186895455486 62.223 0.40574 61.735 61.57 61.976 -0.48764 77 18 5 0 0 0 3.3984E-08 2 33844 33844;33948 148.27 119.19 1 255810000 81443 1846 54591 55728 94700;94701 94700 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.8202514648438 2 648.318971 1294.62339 0.499 0.00032351 -0.56616 -0.00036705 -0.06716 -4.3541E-05 648.3185425252267 61.87 0.54948 61.837 61.59 62.14 -0.032787 100 27 6 0 0 0 2.0345E-07 3 33686 33686;33688;33792 140.63 109.36 1 416310000 81444 1846 54591 55728 94702;94703;94704 94702 -0.012137360423594146 YYFEGIKQTF 10 Unmodified _YYFEGIKQTF_ 0 0 0 ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF ENSG00000100591|ENST00000216479|AHSA1 ENSG00000100591|ENST00000216479|AHSA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3189697265625 2 648.318971 1294.62339 0.76289 0.0004946 -0.40742 -0.00026414 0.35547 0.00023046 648.3188128498923 69.802 2.0199 63.626 62.901 64.921 -6.1757 347 110 4 0 0 0 7.3289E-17 11 45177 45177;45301;45423;45544;45663;45792;45926;46052;46179;46300;46422 179.28 135.43 1 476560000 81445 1846 54591 55728 94705;94706;94707;94708;94709;94710;94711;94712;94713;94714;94715 94705 -0.012137360423594146 YYFEVVFAEF 10 Unmodified _YYFEVVFAEF_ 0 0 0 ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF ENST00000376552.6_1_9:82186909-82187002:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 657.3080444335938 2 657.308072 1312.60159 NaN NaN NaN NaN NaN NaN NaN 21.855 1 21.878 21.378 22.378 0.022896 0 0 0 1.0061 1 11103 11103 0 0 1 81446 12500 54592 55729 94716 94716 -0.042205407909250425 YYFFQIPW 8 Unmodified _YYFFQIPW_ 0 0 0 ENSG00000172031|ENST00000370383|EPHX4 ENSG00000172031|ENST00000370383|EPHX4 ENSG00000172031|ENST00000370383|EPHX4 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.8088989257812 2 582.28166 1162.54877 0.79873 0.00046509 2.3996 0.0013973 3.1983 0.0018623 582.2834417098472 67.486 0.23454 67.504 67.357 67.591 0.018028 14 11 2 0 0 0 8.7369 1 37075 37075 15.768 6.3851 1 3578700 81447 8174 54593 55730 94717 94717 -0.02600454063053803 YYFHARNF 8 Unmodified _YYFHARNF_ 0 0 0 REV__ENSG00000139865|ENST00000553443|TTC6 REV__ENSG00000139865|ENST00000553443|TTC6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 559.2653198242188 2 559.264333 1116.51411 0.39379 0.00022023 -0.18059 -0.000101 0.2132 0.00011924 559.7657688103483 82.827 0.21627 82.827 82.768 82.984 0 13 9 2 0 0 0 0.80975 1 45943 45943 0.79363 0 1 423950 + 81448 20434 54594 55731 94718 94718 -0.03948277151152979 YYFIFVCF 8 Unmodified _YYFIFVCF_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MSMS AL20221201_MKP_PDAC_01 4 367.8407287597656 3 367.841985 1100.50413 NaN NaN NaN NaN NaN NaN NaN 8.9664 1 6.4844 5.9844 6.9844 -2.482 0 0 0 0.97444 1 4521 4521 0.45834 0.18932 1 + 81449 18566 54595 55732 94719 94719 -0.042106012007479876 YYFIFVCF 8 Unmodified _YYFIFVCF_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MSMS AL20221201_MKP_PDAC_01 4 367.8409423828125 3 367.841985 1100.50413 NaN NaN NaN NaN NaN NaN NaN 9.2854 1 6.8034 6.3034 7.3034 -2.482 0 0 0 0.97444 1 4685 4685 0.45834 0.18932 1 + 81450 18566 54595 55732 94720 94720 -0.042106012007479876 YYFIFVCF 8 Unmodified _YYFIFVCF_ 0 0 0 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 REV__nc|ENSG00000107593|Q9P0L9-4|PKD2L1 MSMS AL20221201_MKP_PDAC_01 4 367.8419799804688 3 367.841985 1100.50413 NaN NaN NaN NaN NaN NaN NaN 9.6517 1 7.1697 6.6697 7.6697 -2.482 0 0 0 0.97444 1 4869 4869 0.45834 0.18932 1 + 81451 18566 54595 55732 94721 94721 -0.042106012007479876 YYFIWDKT 8 Unmodified _YYFIWDKT_ 0 0 0 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 ENSG00000149256|ENST00000278550|TENM4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 568.2764892578125 2 568.276575 1134.5386 1.1681 0.00066379 -2.8222 -0.0016038 -1.6542 -0.00094003 568.2754850461776 50.033 0.44469 44.494 44.266 44.71 -5.5391 41 28 2 0 0 0 0.57045 1 31415 31415 28.487 10.352 1 25966000 81452 5994 54596 55733 94722 94722 -0.02329061788304898 YYFKANVFF 9 Unmodified _YYFKANVFF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 599.799072265625 2 599.800217 1197.58588 0.0025306 1.5178E-06 1.0195 0.00061149 1.022 0.00061301 599.8008151790278 77.448 0.37666 77.498 77.321 77.698 0.050102 39 15 4 0 0 0 0.087258 1 42739 42739 36.044 21.463 1 5038000 81453 2768 54597 55734 94723 94723 -0.00500782517292464 YYFKANVFF 9 Unmodified _YYFKANVFF_ 0 0 0 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 ENSG00000111229|ENST00000228825|ARPC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.7994995117188 2 599.800217 1197.58588 0.59453 0.0003566 1.4487 0.00086895 2.0433 0.0012255 599.7999075937008 95.391 0.34667 89.216 88.969 89.316 -6.1757 28 19 2 0 0 0 0.013323 1 63128 63128 71.134 42.647 1 12532000 81454 2768 54597 55734 94724 94724 -0.00500782517292464 YYFLSGLSF 9 Unmodified _YYFLSGLSF_ 0 0 0 nc|ENSG00000181214|Q6IF36|OR8G2P nc|ENSG00000181214|Q6IF36|OR8G2P nc|ENSG00000181214|Q6IF36|OR8G2P MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7705688476562 2 548.771126 1095.5277 0.19597 0.00010754 -0.98148 -0.00053861 -0.78551 -0.00043106 548.7706810894458 46.039 0.31118 45.71 45.578 45.89 -0.32851 30 15 3 0 0 0 0.39863 1 24594 24594 12.532 0 1 12219000 81455 16427 54598 55735 94725 94725 -0.016244641625689837 YYFLYLVY 8 Unmodified _YYFLYLVY_ 0 0 0 nc|ENSG00000113391|Q8WUF8-2|ARB2A;ENST00000506398.6_1_5:93217085-93410459:-|nuORF nc|ENSG00000113391|Q8WUF8-2|ARB2A nc|ENSG00000113391|Q8WUF8-2|ARB2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.2916259765625 2 572.291694 1142.56883 0.79084 0.00045259 -2.7424 -0.0015694 -1.9515 -0.0011169 572.2900115474532 72.573 0.72787 72.097 71.878 72.606 -0.47609 57 33 3 0 0 0 0.80044 1 39825 39825 6.3541 0 1 1369500 81456 14521 54599 55736 94726 94726 0.0032529687689475395 YYFNLGLQCYY 11 Unmodified _YYFNLGLQCYY_ 0 0 0 nc|ENSG00000101901|Q9NP73-4|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 482.8844909667969 3 482.884801 1445.63257 0.38285 0.00018487 0.58851 0.00028418 0.97136 0.00046906 482.885138889741 49.032 0.28877 48.989 48.867 49.155 -0.04369 47 13 5 0 0 0 0.54321 1 26459 26459 14.218 3.3192 1 14458000 81457 1998 54600 55737 94727 94727 -0.07241710748280639 YYFNLGLQCYY 11 Unmodified _YYFNLGLQCYY_ 0 0 0 nc|ENSG00000101901|Q9NP73-4|ALG13;nc|ENSG00000101901|Q9NP73-3|ALG13;ENSG00000101901|ENST00000394780|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 nc|ENSG00000101901|Q9NP73-4|ALG13 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 362.4157409667969 4 362.41542 1445.63257 0.20308 7.3599E-05 0.75581 0.00027392 0.95889 0.00034752 362.4157249740759 49.061 0.24694 49.018 48.887 49.134 -0.04369 36 11 5 0 0 0 0.72981 1 26477 26477 1.4551 0.67859 1 8642500 81458 1998 54600 55737 94728 94728 -0.07241710748280639 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.8154907226562 2 571.815867 1141.61718 0.74195 0.00042426 -0.76435 -0.00043707 -0.0224 -1.2809E-05 571.8151730807567 68.147 0.18803 67.665 67.615 67.803 -0.48218 13 8 2 0 0 0 0.087258 1 37252 37252 36.044 15.591 1 1983400 81459 9729 54601 55738 94729 94729 0.052037905167935605 YYFPVKNVI 9 Unmodified _YYFPVKNVI_ 0 0 0 ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 ENSG00000189091|ENST00000302516|SF3B3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 572.3184204101562 2 571.815867 1141.61718 0.23157 0.00013242 0.36549 0.00020899 0.59706 0.00034141 571.8160831409876 67.646 0.41496 67.664 67.414 67.829 0.018028 51 20 3 0 0 0 0.03327 2 37077 37077;37188 53.576 36.463 1 73295000 81460 9729 54601 55738 94730;94731 94730 0.052037905167935605 YYFQEVPL 8 Unmodified _YYFQEVPL_ 0 0 0 REV__ENSG00000153790|ENST00000283905|C7orf31 REV__ENSG00000153790|ENST00000283905|C7orf31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 529.7625122070312 2 529.7633 1057.51205 0.20408 0.00010811 -1.5421 -0.00081692 -1.338 -0.00070881 529.7625302734671 58.724 0.29939 58.233 58.07 58.369 -0.49079 35 14 3 0 0 0 0.57408 1 31991 31991 28.173 5.0248 1 11372000 + 81461 21184 54602 55739 94732 94732 -0.01440750679626035 YYFRPGHLL 9 Unmodified _YYFRPGHLL_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9;nc|ENSG00000185453|Q86XI8|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.2102966308594 3 389.209948 1164.60801 0.417 0.0001623 -0.24224 -9.4283E-05 0.17476 6.8017E-05 389.20984420212073 52.838 0.29483 52.775 52.624 52.919 -0.063423 40 14 3 0 0 0 0.14602 1 28606 28606 26.268 16.118 1 16306000 81462 9372 54603 55740 94733 94733 0.03229441951134504 YYFRPGHLL 9 Unmodified _YYFRPGHLL_ 0 0 0 ENSG00000185453|ENST00000614654|ZSWIM9;nc|ENSG00000185453|Q86XI8|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 ENSG00000185453|ENST00000614654|ZSWIM9 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 583.311767578125 2 583.311284 1164.60801 0.9441 0.0005507 -1.8652 -0.001088 -0.92108 -0.00053728 583.3098980648718 52.835 0.21782 52.771 52.645 52.863 -0.063423 18 10 2 0 0 0 0.070838 1 28632 28632 39.957 27.426 1 2428900 81463 9372 54603 55740 94734 94734 0.03229441951134504 YYFSTISSSF 10 Unmodified _YYFSTISSSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.2730102539062 2 601.274229 1200.53391 NaN NaN NaN NaN NaN NaN NaN 76.314 1 76.361 75.861 76.861 0.047943 0 0 0 0.81521 1 42107 42107 11.64 0 1 81464 10689 54604 55741 94735 94735 -0.058339907217032305 YYFVFDHAL 9 Unmodified _YYFVFDHAL_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 587.782470703125 2 587.782025 1173.5495 0.00053093 3.1207E-07 1.216 0.00071473 1.2165 0.00071505 587.7826830236498 78.761 0.28716 78.275 78.084 78.372 -0.48596 18 10 2 0 0 0 0.14602 1 43136 43136 28.487 20.577 1 900150 81465 2685;14783 54605 55742 94736 94736 -0.030336594139953377 YYFVFDHAL 9 Unmodified _YYFVFDHAL_ 0 0 0 ENSG00000109929|ENST00000264027|SC5D;ENST00000531140.1_1_11:121174081-121177378:+|nuORF;ENST00000534455.5_1_11:121174081-121175207:+|nuORF;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D;ENST00000524683.5_1_11:121174081-121174345:+|nuORF ENSG00000109929|ENST00000264027|SC5D MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 587.7814331054688 2 587.782025 1173.5495 0.43245 0.00025418 0.74118 0.00043565 1.1736 0.00068983 587.7819093850464 78.122 0.26489 78.174 78.037 78.302 0.052452 20 10 3 0 0 0 0.023164 1 43153 43153 60.39 47.858 1 2765400 81466 2685;14783 54605 55742 94737 94737 -0.030336594139953377 YYFWDPDYQ 9 Unmodified _YYFWDPDYQ_ 0 0 0 ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G ENSG00000239713|ENST00000407997|APOBEC3G MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 648.7639770507812 2 648.764029 1295.5135 NaN NaN NaN NaN NaN NaN NaN 5.9985 1 6.0075 5.5075 6.5075 0.0089307 0 0 0 0.8622 1 3015 3015 0 0 1 81467 10663 54606 55743 94738 94738 -0.1224316138152517 YYFWIVNMLA 10 Unmodified _YYFWIVNMLA_ 0 0 0 REV__ENST00000361671.9_1_9:88637014-88637161:+|nuORF REV__ENST00000361671.9_1_9:88637014-88637161:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.3267822265625 2 660.328285 1318.64202 NaN NaN NaN NaN NaN NaN NaN 27.992 1 27.992 27.492 28.492 0 0 0 0 0.99091 1 14439 14439 1.6526 0.45928 1 + 81468 25930 54607 55744 94739 94739 -0.0045589767212277366 YYFWLDFPL 9 Unmodified _YYFWLDFPL_ 0 0 0 ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF ENST00000483012.1_1_7:148516133-148534012:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.3058471679688 2 632.307875 1262.6012 1.0719 0.00067777 1.1357 0.00071812 2.2076 0.0013959 632.3083530087786 53.941 0.69911 48.076 47.77 48.469 -5.8653 92 41 3 0 0 0 0.15471 2 33959 33959;34387 38.151 17.698 1 51290000 81469 14119 54608 55745 94740;94741 94740 -0.019599157201128037 YYFYLTLM 8 Unmodified _YYFYLTLM_ 0 0 0 REV__nc|ENSG00000040487|Q6ZP29-3|SLC66A1 REV__nc|ENSG00000040487|Q6ZP29-3|SLC66A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2710571289062 2 557.269904 1112.52526 1.4072 0.00078418 -2.1262 -0.0011848 -0.71897 -0.00040066 557.2687448461493 64.555 0.78673 58.379 58.036 58.823 -6.1757 82 43 3 0 0 0 0.67481 1 41831 41831 19.439 2.4967 1 32504000 + 81470 17193 54609 55746 94742 94742 -0.026506358918823025 YYFYLTLM 8 Unmodified _YYFYLTLM_ 0 0 0 REV__nc|ENSG00000040487|Q6ZP29-3|SLC66A1 REV__nc|ENSG00000040487|Q6ZP29-3|SLC66A1 MSMS AL20221201_MKP_PDAC_01 4 557.2747802734375 2 557.269904 1112.52526 NaN NaN NaN NaN NaN NaN NaN 89.217 1 83.042 82.542 83.542 -6.1757 0 0 0 0.70013 1 58887 58887 28.173 1.832 1 + 81471 17193 54609 55746 94743 94743 -0.026506358918823025 YYGCWWYR 8 Unmodified _YYGCWWYR_ 0 0 0 REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 598.7545166015625 2 598.752744 1195.49094 1.7791 0.0010652 1.204 0.00072088 2.983 0.0017861 598.753511975612 93.907 0.32487 93.93 93.819 94.144 0.022987 23 12 2 0 0 0 0.80232 1 52217 52217 5.2307 0.90143 1 1953100 + 81472 29266 54610 55747 94744 94744 -0.09899039260130849 YYGDVIWVI 9 Unmodified _YYGDVIWVI_ 0 0 0 ENSG00000196821|ENST00000374023|ILRUN;ENST00000453101.1_1_2:106961501-106961627:+|nuORF ENSG00000196821|ENST00000374023|ILRUN ENSG00000196821|ENST00000374023|ILRUN MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.2918701171875 2 564.292225 1126.5699 1.3038 0.00073572 0.20416 0.00011521 1.508 0.00085093 564.2918051819405 101.19 0.10517 95.011 94.974 95.079 -6.1757 13 6 3 0 0 0 0.038285 1 67867 67867 50.855 18.55 1 32880000 81473 9873 54611 55748 94745 94745 0.011675112458078729 YYGEHLFML 9 Oxidation (M) _YYGEHLFM(Oxidation (M))L_ YYGEHLFM(1)L YYGEHLFM(57)L 0 0 1 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 594.7748413085938 2 594.773342 1187.53213 0.051898 3.0867E-05 -0.72709 -0.00043245 -0.67519 -0.00040159 594.7731214907853 69.964 0.3597 69.485 69.267 69.627 -0.47903 35 18 3 0 0 0 0.026094 1 38194 38194 57.471 42.633 1 4846900 81474 4276 54612 55749 94746 94746 761 -0.05413323011293869 YYGEHLFML 9 Oxidation (M) _YYGEHLFM(Oxidation (M))L_ YYGEHLFM(1)L YYGEHLFM(42)L 0 0 1 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.7719116210938 2 594.773342 1187.53213 NaN NaN NaN NaN NaN NaN NaN 69.362 1 69.393 68.893 69.893 0.030914 0 0 0 0.10545 1 38123 38123 42.095 27.513 1 81475 4276 54612 55749 94747 94747 761 -0.05413323011293869 YYGEHLFML 9 Unmodified _YYGEHLFML_ 0 0 0 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 ENSG00000130935|ENST00000253247|NOL11 MSMS AL20221201_MKP_PDAC_01 4 586.7774658203125 2 586.775885 1171.53722 NaN NaN NaN NaN NaN NaN NaN 97.963 1 91.787 91.287 92.287 -6.1757 0 0 0 0.46757 1 64935 64935 16.942 4.4107 1 81476 4276 54612 55750 94748 94748 -0.04169019148662301 YYGFGCNKF 9 Carbamidomethyl (C) _YYGFGC(Carbamidomethyl (C))NKF_ YYGFGC(1)NKF YYGFGC(97)NKF 0 1 0 nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1 nc|ENSG00000101384|P78504-2|JAG1 nc|ENSG00000101384|P78504-2|JAG1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.2506713867188 2 578.250034 1154.48552 1.0981 0.00063498 -0.30204 -0.00017465 0.79606 0.00046032 578.2497588025656 55 0.28619 49.079 48.921 49.208 -5.9211 33 17 3 0 0 0 0.0083087 1 34971 34971 97.075 52.668 1 16765000 81477 1958 54613 55751 94749 94749 194 -0.08554762842595665 YYGFGCNKF 9 Carbamidomethyl (C) _YYGFGC(Carbamidomethyl (C))NKF_ 0 1 0 nc|ENSG00000101384|P78504-2|JAG1;ENSG00000101384|ENST00000254958|JAG1 nc|ENSG00000101384|P78504-2|JAG1 nc|ENSG00000101384|P78504-2|JAG1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 578.250034 1154.48552 1.0123 0.00058535 -1.537 -0.0008888 -0.52477 -0.00030345 578.2488315794346 49.489 0.18178 49.44 49.331 49.512 -0.048824 0.18069 -0.0010668 NaN 97.075 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1566400 81478 1958 54613 55751 194 -0.08554762842595665 YYGGQWFLF 9 Unmodified _YYGGQWFLF_ 0 0 0 ENST00000455359.5_2_22:35653519-35659991:+|nuORF ENST00000455359.5_2_22:35653519-35659991:+|nuORF ENST00000455359.5_2_22:35653519-35659991:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7777709960938 2 590.776742 1179.53893 0.7291 0.00043074 3.035 0.001793 3.7641 0.0022238 590.7780126862272 101.47 0.21828 95.296 95.211 95.429 -6.1757 22 10 4 0 0 0 0.094149 1 68112 68112 46.921 28.786 1 13646000 81479 13583 54614 55752 94750 94750 -0.04365642068432862 YYGILDSLSSF 11 Unmodified _YYGILDSLSSF_ 0 0 0 REV__ENSG00000145715|ENST00000274376|RASA1 REV__ENSG00000145715|ENST00000274376|RASA1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 633.3079833984375 2 632.808436 1263.60232 -0.61321 -0.00038805 1.5959 0.0010099 0.98272 0.00062187 632.8094670109755 76.99 0.28604 76.51 76.365 76.651 -0.47945 32 12 3 0 0 0 0.63851 1 42131 42131 9.3831 1.2276 1 1476600 + 81480 20785 54615 55753 94751 94751 -0.018937461418545354 YYGILQEKI 9 Unmodified _YYGILQEKI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENST00000508607.1_1_17:47783564-47785273:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.3134155273438 2 563.810782 1125.60701 0.63017 0.0003553 -0.34033 -0.00019188 0.28984 0.00016341 563.8105934475471 57.511 0.16111 57.511 57.371 57.532 0 11 6 2 0 0 0 0.047788 1 32009 32009 45.7 25.285 1 2343200 81481 3566 54616 55754 94752 94752 0.049231827915718895 YYGILQEKI 9 Unmodified _YYGILQEKI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENST00000508607.1_1_17:47783564-47785273:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 563.8109130859375 2 563.810782 1125.60701 0.49374 0.00027838 -1.1891 -0.00067041 -0.69532 -0.00039203 563.810562032052 58.046 0.49537 57.556 57.247 57.742 -0.48974 44 23 3 0 0 0 0.025842 1 31528 31528 57.722 24.936 1 6322000 81482 3566 54616 55754 94753 94753 0.049231827915718895 YYGILQEKI 9 Unmodified _YYGILQEKI_ 0 0 0 ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1;ENST00000509781.5_1_17:47783523-47785306:-|nuORF;ENST00000435059.6_1_17:47781399-47785273:-|nuORF;ENST00000508607.1_1_17:47783564-47785273:-|nuORF ENSG00000121073|ENST00000240333|SLC35B1 ENSG00000121073|ENST00000240333|SLC35B1 MSMS AL20221201_MKP_PDAC_01 4 563.8118896484375 2 563.810782 1125.60701 NaN NaN NaN NaN NaN NaN NaN 63.582 1 57.407 56.907 57.907 -6.1757 0 0 0 0.10661 1 41122 41122 41.956 19.219 1 81483 3566 54616 55754 94754 94754 0.049231827915718895 YYGKTQFKF 9 Unmodified _YYGKTQFKF_ 0 0 0 ENST00000374902.8_1_9:103084020-103088649:-|nuORF ENST00000374902.8_1_9:103084020-103088649:-|nuORF ENST00000374902.8_1_9:103084020-103088649:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.537841796875 3 394.537842 1180.5917 0.20836 8.2208E-05 0.42896 0.00016924 0.63733 0.00025145 394.5380408224411 48.48 0.23614 48.437 48.3 48.536 -0.04369 18 11 2 0 0 0 0.54444 1 26196 26196 2.7352 0.99292 1 1726200 81484 12464 54617 55755 94755 94755 0.008623159943681458 YYGLYRDLF 9 Unmodified _YYGLYRDLF_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 605.2999267578125 2 605.300581 1208.58661 0.65481 0.00039636 -0.93636 -0.00056678 -0.28155 -0.00017042 605.3001781300442 73.302 0.25703 72.826 72.695 72.952 -0.47588 22 11 2 0 0 0 0.1685 1 40086 40086 26.268 16.194 1 1660700 81485 10268 54618 55756 94756 94756 -0.00933987868256736 YYGLYRDLF 9 Unmodified _YYGLYRDLF_ 0 0 0 ENSG00000204316|ENST00000309352|MRPL38;ENST00000494179.5_1_17:73897660-73900929:-|nuORF;ENST00000477736.5_1_17:73897061-73900795:-|nuORF;ENST00000493104.5_1_17:73897660-73900929:-|nuORF ENSG00000204316|ENST00000309352|MRPL38 ENSG00000204316|ENST00000309352|MRPL38 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 605.3004150390625 2 605.300581 1208.58661 0.070087 4.2424E-05 -0.075742 -4.5846E-05 -0.0056547 -3.4228E-06 605.300339570349 72.7 0.30666 72.742 72.594 72.901 0.041725 39 14 4 0 0 0 0.036857 1 40012 40012 51.63 35.783 1 8582500 81486 10268 54618 55756 94757 94757 -0.00933987868256736 YYGPLNLLTF 10 Unmodified _YYGPLNLLTF_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 600.8181762695312 2 600.818607 1199.62266 -0.63661 -0.00038249 -0.66598 -0.00040013 -1.3026 -0.00078262 600.8185863675415 101.22 0.15528 101.18 101.06 101.22 -0.04216 13 5 4 0 0 0 0.28276 1 56232 56232 42.095 18.074 1 12279000 81487 5547 54619 55757 94758 94758 0.03083469308603526 YYGPLNLLTF 10 Unmodified _YYGPLNLLTF_ 0 0 0 ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF ENSG00000143753|ENST00000323699|DEGS1 ENSG00000143753|ENST00000323699|DEGS1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.8182373046875 2 600.818607 1199.62266 0.020284 1.2187E-05 -0.31286 -0.00018797 -0.29257 -0.00017578 600.8184944883203 101.71 0.13051 95.535 95.461 95.592 -6.1757 17 7 4 0 0 0 0.20195 1 68273 68273 48.346 48.346 1 69145000 81488 5547 54619 55757 94759 94759 0.03083469308603526 YYGPLNWITF 10 Unmodified _YYGPLNWITF_ 0 0 0 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 ENSG00000168350|ENST00000305631|DEGS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 637.3162841796875 2 637.316232 1272.61791 0.48559 0.00030948 -1.442 -0.00091901 -0.95641 -0.00060953 637.3155060030487 101.75 0.073418 95.573 95.545 95.618 -6.1757 10 6 2 0 0 0 0.0044003 1 68310 68310 100.37 60.422 1 34896000 81489 7751 54620 55758 94760 94760 -0.0074941483417205745 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 533.7378540039062 2 533.23745 1064.46035 0.36576 0.00019504 -0.23881 -0.00012734 0.12695 6.7692E-05 533.7396676504578 70.896 0.54214 70.418 70.225 70.767 -0.47736 44 24 3 0 0 0 0.54213 2 38807 38807;38858 7.9102 3.1541 1 1640700 81490 5855;4616 54621 55759 94761;94762 94761 -0.06930494373523288 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 533.3030395507812 2 533.23745 1064.46035 0.7879 0.00042014 -0.61453 -0.00032769 0.17338 9.2451E-05 533.2370975268186 77.712 0.69667 71.536 71.185 71.882 -6.1757 50 39 2 0 0 0 0.16785 1 50777 50777 23.148 21.089 1 11431000 81491 5855;4616 54621 55759 94763 94763 -0.06930494373523288 YYGQGFPSF 9 Unmodified _YYGQGFPSF_ 0 0 0 ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25227083-25246387:+|nuORF;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF ENSG00000147459|ENST00000276440|DOCK5;ENSG00000134516|ENST00000520908|DOCK2 ENSG00000147459|ENST00000276440|DOCK5 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 533.23745 1064.46035 0.6764 0.00036068 0.070901 3.7807E-05 0.7473 0.00039849 533.2370960275974 70.404 0.27361 70.44 70.252 70.526 0.035507 0.010616 0.00016208 NaN 7.9102 18 12 2 NaN NaN NaN NaN 0 NaN NaN 0 857190 81492 5855;4616 54621 55759 -0.06930494373523288 YYGRCEEE 8 Unmodified _YYGRCEEE_ 0 0 0 REV__ENSG00000081248|ENST00000362061|CACNA1S REV__ENSG00000081248|ENST00000362061|CACNA1S MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 524.705322265625 2 524.705657 1047.39676 -0.40394 -0.00021195 0.84541 0.00044359 0.44147 0.00023164 524.705980675669 30.457 0.28184 30.457 30.285 30.566 0 28 13 3 0 0 0 0.76266 1 15814 15814 11.64 1.5664 1 4376500 + 81493 17689 54622 55760 94764 94764 -0.12504222872939863 YYGYKQELFQ 10 Unmodified _YYGYKQELFQ_ 0 0 0 REV__ENSG00000182223|ENST00000327939|ZAR1 REV__ENSG00000182223|ENST00000327939|ZAR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 669.8225708007812 2 669.821878 1337.6292 0.78403 0.00052516 0.34483 0.00023098 1.1289 0.00075614 669.8221756549768 58.8 0.19579 58.74 58.643 58.839 -0.060719 15 9 2 0 0 0 0.66569 1 32053 32053 6.7232 0.51738 1 933970 + 81494 23252 54623 55761 94765 94765 -0.026106375306653717 YYGYKQELFQ 10 Unmodified _YYGYKQELFQ_ 0 0 0 REV__ENSG00000182223|ENST00000327939|ZAR1 REV__ENSG00000182223|ENST00000327939|ZAR1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 670.3570556640625 2 669.821878 1337.6292 0.78403 0.00052516 0.34483 0.00023098 1.1289 0.00075614 669.8221756549768 58.8 0.19579 58.74 58.643 58.839 -0.060719 15 9 2 0 0 0 0.23981 1 31987 31987 1.8442 0 1 933970 + 81495 23252 54623 55761 94766 94766 -0.026106375306653717 YYGYPYNAL 9 Unmodified _YYGYPYNAL_ 0 0 0 ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47 ENSG00000163694|ENST00000295971|RBM47 ENSG00000163694|ENST00000295971|RBM47 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 375.1617431640625 3 375.17468 1122.50221 1.6261 0.00061008 1.6635 0.00062412 3.2896 0.0012342 375.17516600067546 19.825 0.36644 17.169 17.003 17.369 -2.6564 49 22 3 0 0 0 0.21493 1 10613 10613 4.897 3.7037 1 5158800 81496 7051 54624 55762 94767 94767 -0.05413938685001085 YYGYSMDGF 9 Unmodified _YYGYSMDGF_ 0 0 0 REV__ENSG00000188266|ENST00000388988|HYKK REV__ENSG00000188266|ENST00000388988|HYKK MSMS AL20221201_MKP_PDAC_01 4 551.7113037109375 2 551.71295 1101.41135 NaN NaN NaN NaN NaN NaN NaN 47.264 1 42.183 41.683 42.683 -5.0805 0 0 0 0.70111 1 29318 29318 9.3474 0 1 + 81497 23699 54625 55763 94768 94768 -0.13530150724773193 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 416.86767578125 3 416.532979 1246.57711 0.37204 0.00015497 -0.18884 -7.8658E-05 0.1832 7.631E-05 416.86730497332485 38.797 0.29322 38.797 38.66 38.953 0 39 12 4 0 0 0 0.40476 1 20730 20730 12.241 5.6103 1 3974600 81498 2559 54626 55764 94769 94769 -0.03631756153754395 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 416.532958984375 3 416.532979 1246.57711 -0.01797 -7.485E-06 -0.61435 -0.0002559 -0.63232 -0.00026338 416.53272063201166 39.173 0.27892 38.886 38.741 39.02 -0.28687 41 12 4 0 0 0 0.21643 1 20623 20623 21.537 17.347 1 33677000 81499 2559 54626 55764 94770 94770 -0.03631756153754395 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 624.2955322265625 2 624.29583 1246.57711 -0.10254 -6.4017E-05 -0.4973 -0.00031047 -0.59985 -0.00037448 624.2957870534683 39.154 0.19852 38.867 38.763 38.961 -0.28687 14 8 2 0 0 0 0.020316 1 20648 20648 51.63 36.381 1 5064600 81500 2559 54626 55764 94771 94771 -0.03631756153754395 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 416.5331115722656 3 416.532979 1246.57711 0.070578 2.9398E-05 -0.32694 -0.00013618 -0.25636 -0.00010678 416.53291860704326 38.774 0.23994 38.786 38.64 38.88 0.011452 26 11 3 0 0 0 0.40476 1 20595 20595 12.241 4.0851 1 5955400 81501 2559 54626 55764 94772 94772 -0.03631756153754395 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 416.533203125 3 416.532979 1246.57711 0.9539 0.00039733 -0.4483 -0.00018673 0.5056 0.0002106 416.5327128576469 43.356 0.43579 38.591 38.39 38.826 -4.7648 76 29 3 0 0 0 0.094149 2 26366 26230;26366 34.402 26.925 1 83471000 81502 2559 54626 55764 94773;94774 94774 -0.03631756153754395 YYHARVYEF 9 Unmodified _YYHARVYEF_ 0 0 0 ENSG00000108344|ENST00000264639|PSMD3;nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENST00000580980.1_1_17:38142938-38146259:+|nuORF ENSG00000108344|ENST00000264639|PSMD3 ENSG00000108344|ENST00000264639|PSMD3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2962036132812 2 624.29583 1246.57711 0.47737 0.00029802 -0.59149 -0.00036927 -0.11412 -7.1243E-05 624.2955848564234 43.346 0.30518 38.581 38.419 38.724 -4.7648 39 21 2 0 0 0 0.0081 2 26254 26254;26390 103.35 76.47 1 27603000 81503 2559 54626 55764 94775;94776 94775 -0.03631756153754395 YYHCKDCNI 9 Unmodified _YYHCKDCNI_ 0 0 0 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 ENSG00000182223|ENST00000327939|ZAR1 MSMS AL20221201_MKP_PDAC_01 4 386.8288269042969 3 386.82841 1157.4634 NaN NaN NaN NaN NaN NaN NaN 33.403 1 29.417 28.917 29.917 -3.9853 0 0 0 0.67641 1 19155 19155 10.151 0.6066 1 81504 9033 54627 55765 94777 94777 -0.10903310582671111 YYHHDWFIF 9 Unmodified _YYHHDWFIF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-4|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 443.2010192871094 3 443.201341 1326.58219 0.42527 0.00018848 -0.16993 -7.5315E-05 0.25534 0.00011317 443.20124829317376 77.361 0.31184 77.411 77.246 77.558 0.05011 33 12 4 0 0 0 0.2001 1 42673 42673 21.537 15.754 1 4101200 81505 16111 54628 55766 94778 94778 -0.06803452291160283 YYHHDWFIF 9 Unmodified _YYHHDWFIF_ 0 0 0 nc|ENSG00000109572|P51790-2|CLCN3;nc|ENSG00000109572|P51790-5|CLCN3;ENSG00000109572|ENST00000513761|CLCN3;nc|ENSG00000109572|P51790-4|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 nc|ENSG00000109572|P51790-2|CLCN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 664.3001098632812 2 664.298373 1326.58219 0.4221 0.0002804 -0.36674 -0.00024363 0.055361 3.6777E-05 664.2982676060193 77.38 0.35924 77.431 77.173 77.533 0.05011 28 14 3 0 0 0 0.2001 1 42726 42726 23.148 9.2424 1 3461700 81506 16111 54628 55766 94779 94779 -0.06803452291160283 YYHLFAPDK 9 Unmodified _YYHLFAPDK_ 0 0 0 REV__ENST00000555803.5_1_14:67854137-67857439:-|nuORF REV__ENST00000555803.5_1_14:67854137-67857439:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 577.7884521484375 2 577.287474 1152.5604 0.55051 0.0003178 0.049717 2.8701E-05 0.60023 0.0003465 577.7889498411389 60.208 0.18706 60.155 60.052 60.239 -0.053062 15 10 2 0 0 0 0.49272 1 32864 32864 7.9102 0 1 5911500 + 81507 18080 54629 55767 94780 94780 -0.009782570397192103 YYHLHVHF 8 Unmodified _YYHLHVHF_ 0 0 0 ENSG00000110063|ENST00000263579|DCPS;ENST00000529149.1_1_11:126207958-126215505:+|nuORF;DCPS|p.A282T|1|0.18|ENSG00000110063|chr11:126345443-126345443|G/A|missense_variant ENSG00000110063|ENST00000263579|DCPS ENSG00000110063|ENST00000263579|DCPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.9246826171875 2 558.274701 1114.53485 0.90454 0.00050498 1.7136 0.00095666 2.6181 0.0014616 558.275919111805 74.091 0.25418 73.615 73.487 73.741 -0.47588 17 10 2 0 0 0 0.80044 1 40528 40528 6.3541 3.4649 1 699430 81508 2698 54630 55768 94781 94781 -0.017836867714777327 YYHTTSEYI 9 Unmodified _YYHTTSEYI_ 0 0 0 REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.7659912109375 2 588.764029 1175.5135 0.47029 0.00027689 1.0445 0.00061498 1.5148 0.00089187 588.7646915258629 84.388 0.20103 83.888 83.775 83.976 -0.49961 14 8 2 0 0 0 0.41742 1 46172 46172 11.64 2.2929 1 645650 + 81509 17018 54631 55769 94782 94782 -0.06723161381523823 YYHTTSEYI 9 Unmodified _YYHTTSEYI_ 0 0 0 REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G REV__nc|ENSG00000008118|Q96NX5-2|CAMK1G MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.764029 1175.5135 0.47029 0.00027689 1.0445 0.00061498 1.5148 0.00089187 588.7646915258629 84.388 0.20103 83.888 83.775 83.976 -0.49961 0 0 NaN 11.64 14 8 2 NaN NaN NaN NaN 0 NaN NaN 0 645650 + 81510 17018 54631 55769 -0.06723161381523823 YYIDADLLREI 11 Unmodified _YYIDADLLREI_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 692.3622436523438 2 692.361367 1382.70818 NaN NaN NaN NaN NaN NaN NaN 86.541 1 86.541 86.041 87.041 0 0 0 0 0.79773 1 47934 47934 12.175 3.4293 1 81511 5096 54632 55770 94783 94783 0.032135897036141614 YYIDADLLREI 11 Unmodified _YYIDADLLREI_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.362548828125 2 692.361367 1382.70818 0.41234 0.00028549 0.94704 0.00065569 1.3594 0.00094118 692.3620486055172 87.1 0.31458 86.596 86.42 86.734 -0.50423 34 12 4 0 0 0 0.47137 1 47622 47622 17.863 12.131 1 2076500 81512 5096 54632 55770 94784 94784 0.032135897036141614 YYIDADLLREI 11 Unmodified _YYIDADLLREI_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 692.3626708984375 2 692.361367 1382.70818 NaN NaN NaN NaN NaN NaN NaN 87.245 1 86.74 86.24 87.24 -0.50423 0 0 0 0.93767 1 47727 47727 4.1895 1.691 1 81513 5096 54632 55770 94785 94785 0.032135897036141614 YYIDADLLREI 11 Unmodified _YYIDADLLREI_ 0 0 0 nc|ENSG00000138750|Q7Z3B4-2|NUP54;nc|ENSG00000138750|Q7Z3B4-3|NUP54;ENSG00000138750|ENST00000264883|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 nc|ENSG00000138750|Q7Z3B4-2|NUP54 MULTI-MSMS AL20221201_MKP_PDAC_01 4 692.8638305664062 2 692.361367 1382.70818 0.99114 0.00068623 -1.2475 -0.00086369 -0.25632 -0.00017747 692.3600840584071 98.129 0.1973 91.953 91.875 92.072 -6.1757 31 12 3 0 0 0 0.00099783 1 65034 65034 83.278 56.055 1 48234000 81514 5096 54632 55770 94786 94786 0.032135897036141614 YYIDDVFHAL 10 Unmodified _YYIDDVFHAL_ 0 0 0 ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1;nc|ENSG00000143622|Q92963-2|RIT1 ENSG00000143622|ENST00000368323|RIT1 ENSG00000143622|ENST00000368323|RIT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 628.80517578125 2 628.303321 1254.59209 0.31886 0.00020034 -0.76962 -0.00048356 -0.45077 -0.00028322 628.3030263943439 84.051 0.27335 83.552 83.392 83.666 -0.49962 16 11 2 0 0 0 0.6606 1 45977 45977 7.2892 0.56607 1 819840 81515 5536 54633 55771 94787 94787 -0.025023090764079825 YYIDKLEYL 9 Unmodified _YYIDKLEYL_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.3161010742188 2 610.315897 1218.61724 0.33016 0.0002015 0.020596 1.257E-05 0.35075 0.00021407 610.3157981867028 66.645 0.42526 66.645 66.47 66.896 0 68 19 5 0 0 0 0.021948 2 37223 37121;37223 61.602 41.148 1 57580000 81516 16391 54634 55772 94788;94789 94789 0.016677457261494055 YYIDKLEYL 9 Unmodified _YYIDKLEYL_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.3157958984375 2 610.315897 1218.61724 0.43759 0.00026707 -0.55437 -0.00033834 -0.11678 -7.1273E-05 610.315461776012 67.168 0.4814 66.685 66.482 66.963 -0.48219 82 21 6 0 0 0 0.025842 2 36716 36612;36716 57.722 37.268 1 173310000 81517 16391 54634 55772 94790;94791 94791 0.016677457261494055 YYIDKLEYL 9 Unmodified _YYIDKLEYL_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.3162231445312 2 610.315897 1218.61724 1.0322 0.00062997 -0.48559 -0.00029636 0.54661 0.00033361 610.3157242266385 66.685 0.43133 66.694 66.417 66.849 0.0095596 57 20 4 0 0 0 0.036857 1 36555 36555 51.63 29.883 1 39763000 81518 16391 54634 55772 94792 94792 0.016677457261494055 YYIDKLEYL 9 Unmodified _YYIDKLEYL_ 0 0 0 nc|ENSG00000173848|Q7Z628-2|NET1;ENSG00000173848|ENST00000355029|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF nc|ENSG00000173848|Q7Z628-2|NET1 nc|ENSG00000173848|Q7Z628-2|NET1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.3154296875 2 610.315897 1218.61724 0.29213 0.00017829 0.12105 7.3879E-05 0.41318 0.00025217 610.3158298076535 76.963 2.1637 70.787 69.521 71.684 -6.1757 324 120 4 0 0 0 0.0085366 12 49831 49589;49709;49831;49943;50067;50188;50301;50417;50538;50658;50786;50909 90.135 55.733 1 153880000 81519 16391 54634 55772 94793;94794;94795;94796;94797;94798;94799;94800;94801;94802;94803;94804 94795 0.016677457261494055 YYIDPPFKVG 10 Unmodified _YYIDPPFKVG_ 0 0 0 REV__ENSG00000166323|ENST00000393084|C11orf65 REV__ENSG00000166323|ENST00000393084|C11orf65 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8092651367188 2 599.810782 1197.60701 0.14157 8.4915E-05 -1.6261 -0.00097533 -1.4845 -0.00089042 599.8097554221592 69.928 1.0519 63.752 63.21 64.262 -6.1757 144 58 3 0 0 0 0.27276 2 45734 45497;45734 29.082 8.628 1 104190000 + 81520 22104 54635 55773 94805;94806 94806 0.016111827915665344 YYIEEDED 8 Unmodified _YYIEEDED_ 0 0 0 ENSG00000168263|ENST00000382082|KCNV2 ENSG00000168263|ENST00000382082|KCNV2 ENSG00000168263|ENST00000382082|KCNV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 538.2071533203125 2 538.208752 1074.40295 0.78201 0.00042088 -0.66364 -0.00035717 0.11838 6.3711E-05 538.208282115926 83.153 0.33467 76.978 76.79 77.125 -6.1757 33 18 2 0 0 0 0.80143 1 54756 54756 5.7604 1.0044 1 14355000 81521 7737 54636 55774 94807 94807 -0.131274261604176 YYIEGIENSVF 11 Unmodified _YYIEGIENSVF_ 0 0 0 nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A nc|ENSG00000197969|Q96RL7-4|VPS13A MULTI-MSMS AL20221201_MKP_PDAC_01 4 667.3197021484375 2 667.319168 1332.62378 1.106 0.00073808 -0.9097 -0.00060706 0.19634 0.00013102 667.3192472814058 90.646 0.2038 84.47 84.389 84.593 -6.1757 17 11 2 0 0 0 0.10976 1 59928 59928 60.074 46.168 1 7330700 81522 10031 54637 55775 94808 94808 -0.029223611131556027 YYIESSYTRNW 11 Unmodified _YYIESSYTRNW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.5618591308594 3 494.561375 1480.66229 0.38491 0.00019036 0.20799 0.00010287 0.59291 0.00029323 494.5616581066506 68.943 0.31605 68.463 68.264 68.58 -0.48071 30 13 3 0 0 0 0.73237 1 37639 37639 1.2148 0.70888 1 2956400 81523 10828 54638 55776 94809 94809 -0.05881055478607777 YYIESSYTRNW 11 Unmodified _YYIESSYTRNW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 494.5613098144531 3 494.561375 1480.66229 0.25606 0.00012664 0.26155 0.00012935 0.51761 0.00025599 494.5614758244643 69.193 0.34312 68.712 68.506 68.849 -0.48071 31 14 3 0 0 0 0.73237 1 37815 37815 1.2148 0.70888 1 2213400 81524 10828 54638 55776 94810 94810 -0.05881055478607777 YYIESSYTRNW 11 Unmodified _YYIESSYTRNW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 494.561375 1480.66229 0.30001 0.00014837 0.35469 0.00017542 0.6547 0.00032379 494.89594520351653 68.322 0.23482 68.322 68.204 68.439 0 -0.080432 -7.9402E-05 NaN 1.2148 15 10 2 NaN NaN NaN NaN 0 NaN NaN 0 431540 81525 10828 54638 55776 -0.05881055478607777 YYIESSYTRNW 11 Unmodified _YYIESSYTRNW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 494.561375 1480.66229 0.38491 0.00019036 0.20799 0.00010287 0.59291 0.00029323 494.5616581066506 68.943 0.31605 68.463 68.264 68.58 -0.48071 0.060131 -0.00029705 NaN 1.2148 30 13 3 NaN NaN NaN NaN 0 NaN NaN 0 2956400 81526 10828 54638 55776 -0.05881055478607777 YYIESSYTRNW 11 Unmodified _YYIESSYTRNW_ 0 0 0 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 ENSG00000260314|ENST00000569591|MRC1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 3 494.561375 1480.66229 0.72122 0.00035669 0.65728 0.00032507 1.3785 0.00068175 494.89578718294933 68.398 0.22272 68.423 68.318 68.54 0.025146 0.020302 0.00036955 NaN 1.2148 24 10 3 NaN NaN NaN NaN 0 NaN NaN 0 2114800 81527 10828 54638 55776 -0.05881055478607777 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.318115234375 2 589.318243 1176.62193 0.68416 0.00040319 -0.45341 -0.0002672 0.23074 0.00013598 589.317872587781 80.796 0.76265 80.853 80.495 81.258 0.057587 144 30 7 0 0 0 0.033747 4 44631 44526;44631;44744;44859 66.457 53.414 1 398940000 81528 10459 54639 55777 94811;94812;94813;94814 94812 0.04068674659561111 YYIFIPSKF 9 Unmodified _YYIFIPSKF_ 0 0 0 ENST00000542123.5_1_12:12966301-12976268:+|nuORF;ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47 ENST00000542123.5_1_12:12966301-12976268:+|nuORF ENST00000542123.5_1_12:12966301-12976268:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.2147521972656 3 393.214587 1176.62193 1.587 0.00062404 -0.81911 -0.00032209 0.7679 0.00030195 393.21393104907395 95.599 0.25314 89.423 89.282 89.535 -6.1757 25 15 3 0 0 0 0.2546 1 63290 63290 19.362 14.646 1 8516300 81529 10459 54639 55777 94815 94815 0.04068674659561111 YYIHFLEKPYF 11 Unmodified _YYIHFLEKPYF_ 0 0 0 REV__ENST00000489738.1_1_7:108143058-108210073:-|nuORF REV__ENST00000489738.1_1_7:108143058-108210073:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 760.3859252929688 2 760.384645 1518.75474 0.052558 3.9965E-05 1.6024 0.0012184 1.6549 0.0012584 760.3857747891809 61.445 0.19962 61.445 61.297 61.497 0 12 8 2 0 0 0 0.74203 1 34274 34274 0.30703 0.03801 1 931200 + 81530 27867 54640 55778 94816 94816 0.016110743255694615 YYIKELDIL 9 Unmodified _YYIKELDIL_ 0 0 0 ENST00000368885.7_1_6:111214828-111215200:+|nuORF ENST00000368885.7_1_6:111214828-111215200:+|nuORF ENST00000368885.7_1_6:111214828-111215200:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 390.5520629882812 3 390.553269 1168.63798 -0.29951 -0.00011697 -1.7954 -0.00070119 -2.0949 -0.00081817 390.55270201319905 31.364 0.25531 31.394 31.223 31.478 0.030104 19 10 3 0 0 0 0.1773 1 16436 16436 18.373 3.9677 1 6278800 81531 12286 54641 55779 94817 94817 0.060403361057979055 YYINKISSTL 10 Unmodified _YYINKISSTL_ 0 0 0 ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2 ENST00000482246.5_1_1:155141918-155145739:-|nuORF ENST00000482246.5_1_1:155141918-155145739:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 601.3271484375 2 601.326796 1200.63904 0.59414 0.00035727 -0.20071 -0.00012069 0.39343 0.00023658 601.3265913765033 52.312 0.19307 51.878 51.749 51.942 -0.43367 21 9 3 0 0 0 0.14923 1 28248 28248 39.95 18.203 1 2094700 81532 14097 54642 55780 94818 94818 0.04674550474737771 YYINKISSTL 10 Unmodified _YYINKISSTL_ 0 0 0 ENST00000482246.5_1_1:155141918-155145739:-|nuORF;ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENST00000497317.5_1_1:155141918-155145314:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2 ENST00000482246.5_1_1:155141918-155145739:-|nuORF ENST00000482246.5_1_1:155141918-155145739:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 601.3275756835938 2 601.326796 1200.63904 0.18473 0.00011108 1.4089 0.00084722 1.5936 0.0009583 601.3269810940063 51.987 0.21282 51.928 51.814 52.027 -0.058918 22 9 3 0 0 0 0.48505 1 28187 28187 17.113 6.289 1 2977100 81533 14097 54642 55780 94819 94819 0.04674550474737771 YYINKLICI 9 Unmodified _YYINKLICI_ 0 0 0 ENST00000473481.1_1_10:27065936-27112150:-|nuORF ENST00000473481.1_1_10:27065936-27112150:-|nuORF ENST00000473481.1_1_10:27065936-27112150:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.8186645507812 2 571.817553 1141.62055 1.3696 0.00078318 -0.3436 -0.00019648 1.026 0.00058671 571.8177452148378 79.373 1.0942 73.197 72.37 73.464 -6.1757 178 64 4 0 0 0 0.28047 2 51696 51696;52079 18.135 2.8865 1 61651000 81534 13922 54643 55781 94820;94821 94820 0.05540717299186326 YYIQNGIQSF 10 Unmodified _YYIQNGIQSF_ 0 0 0 ENSG00000253729|ENST00000314191|PRKDC;nc|ENSG00000253729|P78527-2|PRKDC ENSG00000253729|ENST00000314191|PRKDC ENSG00000253729|ENST00000314191|PRKDC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 616.8021240234375 2 616.800946 1231.58734 0.59896 0.00036944 -1.7931 -0.001106 -1.1942 -0.00073655 616.8000607107126 62.902 0.19742 62.416 62.385 62.583 -0.48617 13 9 2 0 0 0 0.1028 1 34311 34311 46.021 35.947 1 3333500 81535 10766 54644 55782 94822 94822 -0.01919193219191584 YYISFLKTL 9 Unmodified _YYISFLKTL_ 0 0 0 ENSG00000038532|ENST00000409790|CLEC16A;nc|ENSG00000038532|Q2KHT3-2|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A ENSG00000038532|ENST00000409790|CLEC16A MULTI-MSMS AL20221201_MKP_PDAC_01 4 574.3229370117188 2 574.323525 1146.6325 1.3109 0.00075286 2.6843 0.0015417 3.9952 0.0022945 574.3261691146008 97.821 0.17837 91.645 91.587 91.765 -6.1757 25 11 3 0 0 0 0.047788 1 64876 64876 45.7 20.3 1 30635000 81536 638 54645 55783 94823 94823 0.06504657314008 YYISPLVGVFF 11 Unmodified _YYISPLVGVFF_ 0 0 0 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.8519897460938 2 652.849907 1303.68526 0.88251 0.00057615 0.64857 0.00042342 1.5311 0.00099956 652.8509703913496 102.26 0.087059 96.08 96.027 96.114 -6.1757 10 3 4 0 0 0 0.0097967 1 68632 68632 68.081 51.932 1 14326000 81537 4783 54646 55784 94824 94824 0.045566153768049844 YYITGNLETF 10 Unmodified _YYITGNLETF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 610.7943115234375 2 610.795329 1219.5761 0.51848 0.00031669 -1.1421 -0.00069759 -0.62362 -0.0003809 610.7943963345102 73.213 0.35071 73.213 73.028 73.379 0 47 17 4 0 0 0 0.11755 2 40812 40707;40812 43.858 25.712 1 9504500 81538 1587 54647 55785 94825;94826 94826 -0.024900153133330605 YYITGNLETF 10 Unmodified _YYITGNLETF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 610.7950439453125 2 610.795329 1219.5761 0.75541 0.0004614 -1.1056 -0.00067533 -0.35024 -0.00021392 610.7945888935691 73.731 0.46289 73.255 73.042 73.504 -0.47588 62 21 4 0 0 0 0.11755 2 40398 40289;40398 43.858 27.709 1 30909000 81539 1587 54647 55785 94827;94828 94828 -0.024900153133330605 YYITGNLETF 10 Unmodified _YYITGNLETF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 610.795166015625 2 610.795329 1219.5761 0.39602 0.00024189 -0.2646 -0.00016161 0.13142 8.0272E-05 610.7950306918294 73.221 0.43944 73.263 73.127 73.566 0.041725 49 19 4 0 0 0 0.18021 1 40330 40330 36.127 26.744 1 7419900 81540 1587 54647 55785 94829 94829 -0.024900153133330605 YYITGNLETF 10 Unmodified _YYITGNLETF_ 0 0 0 nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3;nc|ENSG00000091490|Q68CR1-3|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 nc|ENSG00000091490|Q68CR1-2|SEL1L3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 610.7960205078125 2 610.795329 1219.5761 1.0973 0.00067026 -0.074447 -4.5472E-05 1.0229 0.00062478 610.7952836678794 81.441 0.60548 75.265 74.944 75.55 -6.1757 109 34 4 0 0 0 0.043729 3 53406 53283;53406;53532 61.357 38.621 1 194380000 81541 1587 54647 55785 94830;94831;94832 94831 -0.024900153133330605 YYITTRAQF 9 Unmodified _YYITTRAQF_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 581.7982788085938 2 581.798206 1161.58186 0.63365 0.00036866 -1.3448 -0.00078238 -0.71111 -0.00041372 581.7972400197368 47.398 0.26557 47.045 46.86 47.125 -0.3526 18 12 2 0 0 0 0.014417 1 25390 25390 69.105 33.061 1 5276700 81542 8566;427 54648 55786 94833 94833 0.007531279889917641 YYITTRAQF 9 Unmodified _YYITTRAQF_ 0 0 0 nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1 nc|ENSG00000010810|P06241-3|FYN;ENSG00000176105|ENST00000314574|YES1 ENSG00000176105|ENST00000314574|YES1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.7974853515625 2 581.798206 1161.58186 1.0061 0.00058536 -0.89909 -0.00052309 0.10703 6.227E-05 581.7976359268873 52.894 0.36378 47.09 46.937 47.301 -5.8042 38 19 3 0 0 0 0.0013034 2 33364 33364;33471 137.42 73.861 1 71214000 81543 8566;427 54648 55786 94834;94835 94834 0.007531279889917641 YYITTRLFWWY 11 Unmodified _YYITTRLFWWY_ 0 0 0 nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000198964|ENST00000361781|SGMS1;ENSG00000164023|ENST00000690982|SGMS2 nc|ENSG00000198964|Q86VZ5-2|SGMS1;ENSG00000164023|ENST00000690982|SGMS2 nc|ENSG00000198964|Q86VZ5-2|SGMS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 806.4027099609375 2 806.403369 1610.79219 NaN NaN NaN NaN NaN NaN NaN 91.635 1 91.154 90.654 91.654 -0.48092 0 0 0 0.9435 1 50087 50087 0 0 1 81544 10216;7114 54649 55787 94836 94836 0.011221655911640482 YYIYSQTYF 9 Unmodified _YYIYSQTYF_ 0 0 0 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 ENSG00000121858|ENST00000241261|TNFSF10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 624.2844848632812 2 624.284597 1246.55464 0.99363 0.00062031 -1.986 -0.0012398 -0.99237 -0.00061952 624.7842035061562 79.828 0.35793 73.652 73.404 73.762 -6.1757 57 21 3 0 0 0 0.15471 1 52255 52255 38.151 15.003 1 29710000 81545 3602 54650 55788 94837 94837 -0.05877400342023975 YYKAETEQI 9 Unmodified _YYKAETEQI_ 0 0 0 REV__nc|ENSG00000160293|P52735-3|VAV2 REV__nc|ENSG00000160293|P52735-3|VAV2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 382.1887817382812 3 382.188878 1143.5448 1.701 0.0006501 1.7515 0.00066942 3.4525 0.0013195 382.1896348013225 41.579 0.55976 36.971 36.817 37.377 -4.6079 66 36 3 0 0 0 0.43463 1 24926 24926 7.1017 0 1 21548000 + 81546 21531 54651 55789 94838 94838 -0.021225883474244256 YYKDFTIYN 9 Unmodified _YYKDFTIYN_ 0 0 0 nc|ENSG00000173218|Q8TAA9-2|VANGL1;ENSG00000173218|ENST00000355485|VANGL1 nc|ENSG00000173218|Q8TAA9-2|VANGL1 nc|ENSG00000173218|Q8TAA9-2|VANGL1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.529296875 3 409.529123 1225.56554 NaN NaN NaN NaN NaN NaN NaN 20.214 1 20.214 19.714 20.714 0 0 0 0 0.85798 1 10159 10159 0.23584 0.095952 1 81547 8301 54652 55790 94839 94839 -0.03821997967747848 YYKDIVENI 9 Unmodified _YYKDIVENI_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.798095703125 2 578.797872 1155.58119 0.49534 0.0002867 -2.0541 -0.0011889 -1.5587 -0.00090219 578.7973404663926 50.017 0.43575 50.017 49.773 50.209 0 49 20 4 0 0 0 0.044296 1 27562 27562 47.594 15.557 1 7003400 81548 16159 54653 55791 94840 94840 0.009622885492944988 YYKDIVENI 9 Unmodified _YYKDIVENI_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7982788085938 2 578.797872 1155.58119 0.91818 0.00053144 -1.1285 -0.00065319 -0.21035 -0.00012175 578.7970980640725 50.527 0.22432 50.114 50.012 50.236 -0.41351 23 10 3 0 0 0 0.11784 1 27201 27201 31.268 16.43 1 4767700 81549 16159 54653 55791 94841 94841 0.009622885492944988 YYKDIVENI 9 Unmodified _YYKDIVENI_ 0 0 0 nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO nc|ENSG00000120802|P42166|TMPO MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7991333007812 2 578.797872 1155.58119 0.75323 0.00043597 -0.93559 -0.00054152 -0.18236 -0.00010555 578.7974935873749 56.557 0.4839 50.58 50.375 50.859 -5.9769 46 23 3 0 0 0 0.094149 1 36141 36141 34.402 3.7652 1 41164000 81550 16159 54653 55791 94842 94842 0.009622885492944988 YYKFWYFFLYR 11 Unmodified _YYKFWYFFLYR_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.419189453125 2 848.421562 1694.82857 NaN NaN NaN NaN NaN NaN NaN 33.358 1 33.358 32.858 33.858 0 0 0 0 0.9435 1 17486 17486 0 0 1 + 81551 28076 54654 55792 94843 94843 0.008950424878776175 YYKFWYFFLYR 11 Unmodified _YYKFWYFFLYR_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 848.4175415039062 2 848.421562 1694.82857 NaN NaN NaN NaN NaN NaN NaN 33.557 1 33.557 33.057 34.057 0 0 0 0 0.9435 1 17610 17610 0 0 1 + 81552 28076 54654 55792 94844 94844 0.008950424878776175 YYKFWYFFLYR 11 Unmodified _YYKFWYFFLYR_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.41748046875 2 848.421562 1694.82857 NaN NaN NaN NaN NaN NaN NaN 83.262 1 83.325 82.825 83.825 0.063171 0 0 0 0.9435 1 46062 46062 0 0 1 + 81553 28076 54654 55792 94845 94845 0.008950424878776175 YYKFWYFFLYR 11 Unmodified _YYKFWYFFLYR_ 0 0 0 REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF REV__ENST00000505799.1_1_5:37379427-37381852:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 848.4191284179688 2 848.421562 1694.82857 NaN NaN NaN NaN NaN NaN NaN 85.398 1 85.46 84.96 85.96 0.061638 0 0 0 0.94301 1 47274 47274 0.35063 0.35063 1 + 81554 28076 54654 55792 94846 94846 0.008950424878776175 YYKHRYFYSYN 11 Unmodified _YYKHRYFYSYN_ 0 0 0 REV__ENST00000295119.8_1_2:184026161-184026248:+|nuORF REV__ENST00000295119.8_1_2:184026161-184026248:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 802.3741455078125 2 802.370058 1602.72556 NaN NaN NaN NaN NaN NaN NaN 57.343 1 57.343 56.843 57.843 0 0 0 0 0.94337 1 31909 31909 0 0 1 + 81555 25259 54655 55793 94847 94847 -0.051690699706796295 YYKKCPELL 9 Carbamidomethyl (C) _YYKKC(Carbamidomethyl (C))PELL_ YYKKC(1)PELL YYKKC(62)PELL 0 1 0 ENSG00000142627|ENST00000358432|EPHA2;nc|ENSG00000142627|P29317-2|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 ENSG00000142627|ENST00000358432|EPHA2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.3173217773438 2 607.317917 1212.62128 0.90872 0.00055188 -1.6276 -0.00098846 -0.71886 -0.00043658 607.3179488612305 35.779 0.34615 31.587 31.409 31.755 -4.1928 50 21 3 0 0 0 0.021948 1 20744 20744 61.602 38.866 1 11260000 81556 5434 54656 55794 94848 94848 556 0.023475119482100126 YYKPDSPEY 9 Unmodified _YYKPDSPEY_ 0 0 0 nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1;nc|ENSG00000163939|Q86U86-6|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 nc|ENSG00000163939|Q86U86-5|PBRM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 581.2586669921875 2 581.258579 1160.50261 -0.30738 -0.00017867 0.31292 0.00018188 0.0055388 3.2195E-06 581.2586447653135 28.998 0.17942 28.998 28.903 29.082 0 14 8 2 0 0 0 0.34999 1 15020 15020 14.838 9.1064 1 947110 81557 7101 54657 55795 94849 94849 -0.07122563755797273 YYKTRIPKF 9 Unmodified _YYKTRIPKF_ 0 0 0 nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 nc|ENSG00000115761|Q9BSC4-2|NOL10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 405.90234375 3 405.901003 1214.68118 1.3451 0.00054597 -0.24893 -0.00010104 1.0962 0.00044493 405.9008523042255 37.388 0.39761 33.105 32.873 33.27 -4.2835 57 23 3 0 0 0 0.14594 1 21871 21871 27.088 11.35 1 15139000 81558 3161 54658 55796 94850 94850 0.08242570673724003 YYLAEPRAL 9 Unmodified _YYLAEPRAL_ 0 0 0 REV__ENSG00000069399|ENST00000164227|BCL3 REV__ENSG00000069399|ENST00000164227|BCL3 MSMS AL20221201_MKP_PDAC_01 4 365.8662719726562 3 365.865958 1094.57605 NaN NaN NaN NaN NaN NaN NaN 15.931 1 13.374 12.874 13.874 -2.557 0 0 0 0.76439 1 8217 8217 4.5289 0 1 + 81559 17451 54659 55797 94851 94851 0.03254029477329823 YYLARSHF 8 Unmodified _YYLARSHF_ 0 0 0 REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 352.84716796875 3 352.846898 1055.51886 -0.5892 -0.0002079 0.97273 0.00034322 0.38353 0.00013533 352.8472570618493 18.727 0.36714 18.75 18.668 19.035 0.023106 105 40 3 0 0 0 0.80975 1 9479 9479 0.45834 0 1 6611000 + 81560 18518 54660 55798 94852 94852 -0.006673930083934465 YYLDDIICP 9 Unmodified _YYLDDIICP_ 0 0 0 ENST00000290795.7_1_1:46126251-46126365:-|nuORF ENST00000290795.7_1_1:46126251-46126365:-|nuORF ENST00000290795.7_1_1:46126251-46126365:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 557.7599487304688 2 557.759901 1113.50525 NaN NaN NaN NaN NaN NaN NaN 18.44 1 18.463 17.963 18.963 0.023106 0 0 0 0.8622 1 9246 9246 0 0 1 81561 11468 54661 55799 94853 94853 -0.04696431622483033 YYLDEIPPKF 10 Unmodified _YYLDEIPPKF_ 0 0 0 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 642.8289184570312 2 642.829172 1283.64379 -0.30555 -0.00019642 1.0317 0.00066323 0.72618 0.00046681 642.8298458200683 69.757 0.38154 69.278 69.042 69.424 -0.47903 22 16 2 0 0 0 0.67755 1 38160 38160 9.3831 5.4387 1 520440 81562 9241 54662 55800 94854 94854 0.013314346174411185 YYLDEIPPKF 10 Unmodified _YYLDEIPPKF_ 0 0 0 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 ENSG00000184292|ENST00000371225|TACSTD2 MSMS AL20221201_MKP_PDAC_01 4 642.8279418945312 2 642.829172 1283.64379 NaN NaN NaN NaN NaN NaN NaN 78.567 1 72.391 71.891 72.891 -6.1757 0 0 0 0.43781 1 51437 51437 40.239 30.856 1 81563 9241 54662 55800 94855 94855 0.013314346174411185 YYLDGHITL 9 Unmodified _YYLDGHITL_ 0 0 0 REV__ENSG00000087365|ENST00000322535|SF3B2 REV__ENSG00000087365|ENST00000322535|SF3B2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 548.7861328125 2 547.779482 1093.54441 0.4375 0.00023965 3.6658 0.002008 4.1033 0.0022477 547.7797464751982 83.725 0.50629 83.228 82.914 83.421 -0.49751 58 20 4 0 0 0 0.39863 1 45821 45821 12.532 0.89125 1 2970000 + 81564 17788 54663 55801 94856 94856 0.0013803672338781325 YYLDHSILL 9 Unmodified _YYLDHSILL_ 0 0 0 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 568.8056030273438 2 568.802957 1135.59136 1.3019 0.00074051 2.0242 0.0011514 3.3261 0.0018919 568.8039125944839 71.071 0.33914 71.107 70.936 71.275 0.035515 34 14 4 0 0 0 0.047788 1 39151 39151 50.855 10.898 1 3400300 81565 4783 54664 55802 94857 94857 0.028988962745415847 YYLDHSILL 9 Unmodified _YYLDHSILL_ 0 0 0 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 568.802957 1135.59136 -0.08 -4.5504E-05 0.79422 0.00045175 0.71422 0.00040625 568.8029362571826 71.223 0.28028 71.223 71.065 71.346 0 0.052363 -0.00065437 NaN 50.855 21 13 2 NaN NaN NaN NaN 0 NaN NaN 0 648630 81566 4783 54664 55802 0.028988962745415847 YYLDHSILL 9 Unmodified _YYLDHSILL_ 0 0 0 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 ENSG00000136052|ENST00000258538|SLC41A2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 568.802957 1135.59136 0.69045 0.00039273 1.418 0.00080657 2.1085 0.0011993 568.8035608280657 71.658 0.36684 71.181 71.022 71.389 -0.47609 0.011256 5.5269E-05 NaN 50.855 38 14 3 NaN NaN NaN NaN 0 NaN NaN 0 9563100 81567 4783 54664 55802 0.028988962745415847 YYLDLGEQQN 10 Unmodified _YYLDLGEQQN_ 0 0 0 ENST00000524717.5_1_11:95710913-95711108:-|nuORF ENST00000524717.5_1_11:95710913-95711108:-|nuORF ENST00000524717.5_1_11:95710913-95711108:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7838745117188 2 621.785492 1241.55643 0.68508 0.00042597 -0.021617 -1.3441E-05 0.66346 0.00041253 621.7844845062696 73.762 0.24332 73.286 73.118 73.362 -0.47588 14 10 2 0 0 0 0.52097 1 40374 40374 15.248 1.3424 1 1890400 81568 14784 54665 55803 94858 94858 -0.05468391324052391 YYLEHPEKL 9 Unmodified _YYLEHPEKL_ 0 0 0 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 397.8736572265625 3 397.873001 1190.59717 0.51101 0.00020332 -0.43748 -0.00017406 0.073533 2.9257E-05 397.8728733645734 36.48 0.23751 36.48 36.35 36.588 0 24 11 3 0 0 0 0.047788 1 19344 19344 42.312 2.0733 1 6848200 81569 5245 54666 55804 94859 94859 0.009499947861968394 YYLEHPEKL 9 Unmodified _YYLEHPEKL_ 0 0 0 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 ENSG00000140511|ENST00000359595|HAPLN3 MULTI-SECPEP AL20221201_MKP_PDAC_01 4 398.2515563964844 3 397.873001 1190.59717 1.1403 0.00045368 0.087915 3.4979E-05 1.2282 0.00048866 397.8726767604733 41.121 0.23515 36.513 36.311 36.547 -4.6079 24 14 2 0 0 0 0.16102 1 24555 24555 28.495 10.121 1 14052000 81570 5245 54666 55804 94860 94860 0.009499947861968394 YYLEKYLVL 9 Unmodified _YYLEKYLVL_ 0 0 0 REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.3368530273438 2 602.336633 1202.65871 -0.01688 -1.0168E-05 0.9606 0.0005786 0.94372 0.00056844 602.3368876274291 78.689 0.28841 78.203 78.035 78.323 -0.48596 24 10 3 0 0 0 0.28023 1 43069 43069 18.146 8.7632 1 1108000 + 81571 28747 54667 55805 94861 94861 0.06548926485470474 YYLEKYLVL 9 Unmodified _YYLEKYLVL_ 0 0 0 REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.2487182617188 2 602.336633 1202.65871 -0.01688 -1.0168E-05 0.9606 0.0005786 0.94372 0.00056844 602.3368876274291 78.689 0.28841 78.203 78.035 78.323 -0.48596 24 10 3 0 0 0 0.21767 1 43035 43035 2.9952 0 1 1108000 + 81572 28747 54667 55805 94862 94862 0.06548926485470474 YYLEKYLVL 9 Unmodified _YYLEKYLVL_ 0 0 0 REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 602.3385620117188 2 602.336633 1202.65871 0.14299 8.6126E-05 1.8855 0.0011357 2.0285 0.0012218 602.337442342445 78.085 0.30992 78.138 77.939 78.249 0.052444 26 12 3 0 0 0 0.047196 1 43097 43097 46.021 11.619 1 3856000 + 81573 28747 54667 55805 94863 94863 0.06548926485470474 YYLEKYLVL 9 Unmodified _YYLEKYLVL_ 0 0 0 REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF REV__ENST00000554099.1_1_14:82382757-82383015:+|nuORF MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 602.336633 1202.65871 0.14299 8.6126E-05 1.8855 0.0011357 2.0285 0.0012218 602.337442342445 78.085 0.30992 78.138 77.939 78.249 0.052444 -0.032901 0.00087901 NaN 46.021 26 12 3 NaN NaN NaN NaN 0 NaN NaN 0 3856000 + 81574 28747 54667 55805 0.06548926485470474 YYLGNPAEF 9 Unmodified _YYLGNPAEF_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 537.2506713867188 2 537.250557 1072.48656 0.18091 9.7195E-05 1.252 0.00067266 1.433 0.00076986 537.2507486449501 65.022 0.44247 65.022 64.853 65.296 0 30 14 3 0 0 0 0.18465 1 36270 36270 24.674 13.034 1 3795200 81575 710 54668 55806 94864 94864 -0.046782252020420856 YYLGNPAEF 9 Unmodified _YYLGNPAEF_ 0 0 0 ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1 ENSG00000049449|ENST00000054950|RCN1 ENSG00000049449|ENST00000054950|RCN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 537.2510986328125 2 537.250557 1072.48656 0.0012496 6.7132E-07 2.0707 0.0011125 2.072 0.0011132 537.2512416099897 65.619 0.26636 65.135 65 65.267 -0.48428 26 11 3 0 0 0 0.03327 1 35816 35816 53.576 25.089 1 3166000 81576 710 54668 55806 94865 94865 -0.046782252020420856 YYLHQNNIVHL 11 Unmodified _YYLHQNNIVHL_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 471.9147033691406 3 471.913971 1412.72008 0.79059 0.00037309 0.65665 0.00030988 1.4472 0.00068297 471.91417353015754 47.265 0.18108 47.227 47.118 47.299 -0.038643 14 8 2 0 0 0 0.73114 1 25478 25478 1.3296 0.82369 1 2298800 81577 1323 54669 55807 94866 94866 0.030232512374823273 YYLHQNNIVHL 11 Unmodified _YYLHQNNIVHL_ 0 0 0 ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B ENSG00000081320|ENST00000263955|STK17B MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 471.913971 1412.72008 0.6964 0.00032864 0.047167 2.2259E-05 0.74356 0.0003509 471.9140046282927 47.527 0.13837 47.175 47.085 47.223 -0.3526 -0.025954 -0.00027804 NaN 1.3296 9 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1550500 81578 1323 54669 55807 0.030232512374823273 YYLHVQSML 9 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ YYLHVQSM(1)L YYLHVQSM(61)L 0 0 1 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 585.2857666015625 2 585.286617 1168.55868 0.64929 0.00038002 -0.95722 -0.00056025 -0.30793 -0.00018023 585.2854636446638 50.628 0.46658 50.214 50.072 50.538 -0.41351 53 22 3 0 0 0 0.022193 1 27243 27243 61.357 27.255 1 2933500 81579 8645 54670 55808 94867 94867 1463 -0.01885634119958013 YYLHVQSML 9 Oxidation (M) _YYLHVQSM(Oxidation (M))L_ YYLHVQSM(1)L YYLHVQSM(48)L 0 0 1 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 ENSG00000176994|ENST00000406438|SMCR8 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 585.2853393554688 2 585.286617 1168.55868 1.5687 0.00091811 -1.2585 -0.0007366 0.31013 0.00018152 585.285905955894 50.274 0.50723 50.225 50.087 50.594 -0.048824 52 24 3 0 0 0 0.042911 1 27167 27167 48.346 16.04 1 2681900 81580 8645 54670 55808 94868 94868 1463 -0.01885634119958013 YYLKEHHEHF 10 Unmodified _YYLKEHHEHF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 468.2229309082031 3 468.222805 1401.64658 -0.075099 -3.5163E-05 -0.53972 -0.00025271 -0.61482 -0.00028787 468.2225230520288 19.902 0.15051 19.902 19.801 19.952 0 35 16 3 0 0 0 0.52888 1 9973 9973 17.443 15.357 1 1455100 81581 1378 54671 55809 94869 94869 -0.03817297205023351 YYLKEHHEHF 10 Unmodified _YYLKEHHEHF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 468.2225341796875 3 468.222805 1401.64658 -0.49041 -0.00022962 0.37387 0.00017506 -0.11654 -5.4567E-05 468.22293522808326 19.715 0.14515 19.743 19.691 19.836 0.028355 15 9 2 0 0 0 0.27276 1 9970 9970 37.075 27.31 1 1092900 81582 1378 54671 55809 94870 94870 -0.03817297205023351 YYLKEHHEHF 10 Unmodified _YYLKEHHEHF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 468.2229614257812 3 468.222805 1401.64658 0.43553 0.00020392 0.36894 0.00017275 0.80447 0.00037667 468.2228580294227 22.544 0.27797 19.766 19.594 19.872 -2.7784 37 15 3 0 0 0 0.077785 1 12084 12084 37.771 32.369 1 8789500 81583 1378 54671 55809 94871 94871 -0.03817297205023351 YYLKEHHEHF 10 Unmodified _YYLKEHHEHF_ 0 0 0 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 ENSG00000083857|ENST00000441802|FAT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 351.4195861816406 4 351.418923 1401.64658 1.1894 0.00041799 0.092159 3.2386E-05 1.2816 0.00045038 351.41900387048395 22.58 0.25874 19.801 19.613 19.872 -2.7784 23 14 2 0 0 0 0.42143 1 12095 12095 13.519 10.887 1 5455900 81584 1378 54671 55809 94872 94872 -0.03817297205023351 YYLKHHGKL 9 Unmodified _YYLKHHGKL_ 0 0 0 ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1 ENSG00000182568|ENST00000338745|SATB1 ENSG00000182568|ENST00000338745|SATB1 MSMS AL20221201_MKP_PDAC_01 4 386.8857116699219 3 386.885464 1157.63456 NaN NaN NaN NaN NaN NaN NaN 16.859 1 14.302 13.802 14.802 -2.557 0 0 0 0.36957 1 8766 8766 21.537 10.713 1 81585 9067 54672 55810 94873 94873 0.06205130842477047 YYLKNSPDL 9 Unmodified _YYLKNSPDL_ 0 0 0 nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 nc|ENSG00000055917|Q8TB72-2|PUM2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 556.785400390625 2 556.784764 1111.55498 -0.13666 -7.6091E-05 0.3876 0.00021581 0.25093 0.00013972 556.7853865753344 41.353 0.204 41.353 41.218 41.422 0 14 9 3 0 0 0 0.023481 1 22301 22301 60.074 23.947 1 3537200 81586 780 54673 55811 94874 94874 0.0036601937779323634 YYLKRFFEV 9 Unmodified _YYLKRFFEV_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 422.2299499511719 3 422.229008 1263.66519 0.29097 0.00012285 0.40917 0.00017276 0.70014 0.00029562 422.2291177973345 60.848 0.31427 60.804 60.633 60.947 -0.04351 33 15 3 0 0 0 0.11005 1 33190 33190 32.037 16.299 1 12694000 81587 1440 54674 55812 94875 94875 0.04390864436822994 YYLKRFFEV 9 Unmodified _YYLKRFFEV_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 422.2296142578125 3 422.229008 1263.66519 1.2594 0.00053177 -0.13078 -5.522E-05 1.1286 0.00047655 422.22897951719756 93.819 0.19675 87.643 87.521 87.718 -6.1757 27 11 3 0 0 0 0.13231 1 62092 62092 29.841 16.968 1 43431000 81588 1440 54674 55812 94876 94876 0.04390864436822994 YYLKRFFEV 9 Unmodified _YYLKRFFEV_ 0 0 0 ENSG00000086598|ENST00000262225|TMED2;ENST00000543425.1_1_12:124075023-124081273:+|nuORF ENSG00000086598|ENST00000262225|TMED2 ENSG00000086598|ENST00000262225|TMED2 MSMS AL20221201_MKP_PDAC_01 4 632.8397216796875 2 632.839874 1263.66519 NaN NaN NaN NaN NaN NaN NaN 93.816 1 87.64 87.14 88.14 -6.1757 0 0 0 0.18257 1 62120 62120 34.932 17.819 1 81589 1440 54674 55812 94877 94877 0.04390864436822994 YYLLADYHF 9 Unmodified _YYLLADYHF_ 0 0 0 nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 nc|ENSG00000099991|Q9Y6J0-2|CABIN1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7883911132812 2 602.787307 1203.56006 -0.68587 -0.00041344 0.73692 0.00044421 0.05105 3.0772E-05 603.2888467010587 77.537 0.18916 77.055 76.977 77.166 -0.4826 13 9 2 0 0 0 0.052168 2 42478 42478;42487 44.407 33.583 1 739980 81590 1731 54675 55813 94878;94879 94878 -0.03357676759583228 YYLLGEDAHR 10 Unmodified _YYLLGEDAHR_ 0 0 0 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 ENSG00000178021|ENST00000317802|TSPYL6 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.802978515625 2 618.80402 1235.59349 0.73113 0.00045243 -1.675 -0.0010365 -0.94389 -0.00058408 618.8024666764204 63.458 0.34973 57.283 57.156 57.506 -6.1757 33 19 2 0 0 0 0.18021 1 41127 41127 36.127 5.9022 1 26299000 81591 8721 54676 55814 94880 94880 -0.014886749876723115 YYLLKNEQF 9 Unmodified _YYLLKNEQF_ 0 0 0 nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000587974.1_1_18:43487913-43547205:-|nuORF nc|ENSG00000152223|Q9HCE0-2|EPG5 nc|ENSG00000152223|Q9HCE0-2|EPG5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 609.3135986328125 2 609.313689 1216.61282 0.35039 0.0002135 1.1571 0.00070502 1.5075 0.00091852 609.313753280327 55.201 0.21266 54.723 54.607 54.82 -0.47798 17 9 2 0 0 0 0.047196 1 29929 29929 46.021 20.622 1 2632800 81592 6171 54677 55815 94881 94881 0.013182813032244667 YYLLTSGSLI 10 Unmodified _YYLLTSGSLI_ 0 0 0 REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1 REV__nc|ENSG00000136828|Q5JS13-2|RALGPS1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 565.7747802734375 2 565.310615 1128.60668 NaN NaN NaN NaN NaN NaN NaN 100.14 1 99.981 99.481 100.48 -0.1575 0 0 0 1.0061 1 54663 54663 0 0 1 + 81593 20185 54678 55816 94882 94882 0.047517630717266 YYLNDLDRI 9 Unmodified _YYLNDLDRI_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 592.8018188476562 2 592.800946 1183.58734 0.48469 0.00028733 -0.66831 -0.00039617 -0.18361 -0.00010885 592.8002255966286 60.419 0.53144 60.419 60.279 60.811 0 67 23 4 0 0 0 0.014182 2 33676 33676;33782 85.642 39.621 1 26633000 81594 891;10493 54679 55817 94883;94884 94883 0.0028880678080440703 YYLNDLDRI 9 Unmodified _YYLNDLDRI_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.8001098632812 2 592.800946 1183.58734 -0.22774 -0.000135 -0.21492 -0.0001274 -0.44265 -0.00026241 592.8007368427374 60.974 0.26433 60.485 60.353 60.617 -0.48932 29 12 3 0 0 0 0.014182 1 33204 33204 85.642 39.621 1 17932000 81595 891;10493 54679 55817 94885 94885 0.0028880678080440703 YYLNDLDRI 9 Unmodified _YYLNDLDRI_ 0 0 0 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3;ENSG00000214415|ENST00000398291|GNAT3 ENSG00000065135|ENST00000369851|GNAI3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 592.8016357421875 2 592.800946 1183.58734 0.34171 0.00020257 0.65786 0.00038998 0.99957 0.00059254 592.8014461825163 66.816 0.52077 60.64 60.441 60.962 -6.1757 65 29 3 0 0 0 0.014763 2 43408 43408;43549 74.2 18.111 1 44616000 81596 891;10493 54679 55817 94886;94887 94886 0.0028880678080440703 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 599.8080444335938 2 599.808771 1197.60299 -0.10885 -6.529E-05 -0.77105 -0.00046248 -0.8799 -0.00052777 599.8082473167227 62.18 0.39108 62.18 61.974 62.365 0 68 19 4 0 0 0 0.011671 2 34725 34623;34725 75.761 39.255 1 131940000 81597 16131;4053 54680 55818 94888;94889 94889 0.01209093297848085 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.8095703125 2 599.808771 1197.60299 0.61549 0.00036918 -0.85635 -0.00051365 -0.24086 -0.00014447 599.8083059328131 62.683 0.34458 62.197 62.021 62.365 -0.48617 52 16 4 0 0 0 0.025842 2 34118 34118;34227 57.722 21.595 1 63560000 81598 16131;4053 54680 55818 94890;94891 94890 0.01209093297848085 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 599.8095703125 2 599.808771 1197.60299 0.13151 7.8883E-05 0.61138 0.00036671 0.74289 0.00044559 599.809242030892 68.387 0.85633 62.211 61.906 62.762 -6.1757 92 49 3 0 0 0 0.0074135 5 44861 44474;44602;44731;44861;44986 110.67 60.742 1 34675000 81599 16131;4053 54680 55818 94892;94893;94894;94895;94896 94895 0.01209093297848085 YYLNDLERI 9 Unmodified _YYLNDLERI_ 0 0 0 nc|ENSG00000114353|P04899-4|GNAI2;nc|ENSG00000114353|P04899-6|GNAI2;ENST00000490122.5_1_3:50289817-50295119:+|nuORF;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000114353|ENST00000313601|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2;ENSG00000128266|ENST00000615612|GNAZ nc|ENSG00000114353|P04899-4|GNAI2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 599.808771 1197.60299 0.15691 9.4117E-05 -0.44231 -0.0002653 -0.2854 -0.00017118 600.3098728506146 62.244 0.26612 62.211 62.082 62.348 -0.032787 0.011347 4.2052E-06 NaN 110.67 19 13 2 NaN NaN NaN NaN 0 NaN NaN 0 10003000 81600 16131;4053 54680 55818 0.01209093297848085 YYLNEIQSF 9 Unmodified _YYLNEIQSF_ 0 0 0 nc|ENSG00000160284|Q9H0A9-2|SPATC1L;ENSG00000160284|ENST00000291672|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L nc|ENSG00000160284|Q9H0A9-2|SPATC1L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 588.782470703125 2 588.782222 1175.54989 0.52356 0.00030826 0.55543 0.00032703 1.079 0.00063529 588.7820152884779 71.99 0.24695 71.514 71.389 71.636 -0.47609 14 9 2 0 0 0 0.12841 1 39392 39392 30.225 12.078 1 2185700 81601 6711 54681 55819 94897 94897 -0.030862844848115856 YYLNFISAI 9 Unmodified _YYLNFISAI_ 0 0 0 ENSG00000092108|ENST00000458591|SCFD1;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 ENSG00000092108|ENST00000458591|SCFD1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.2955932617188 2 552.292225 1102.5699 4.3579 0.0024069 2.3133 0.0012776 6.6712 0.0036845 552.2929081799713 99.204 0.22278 99.175 99.051 99.274 -0.028282 14 7 3 0 0 0 0.15471 1 55094 55094 38.151 13.477 1 2278200 81602 1606 54682 55820 94898 94898 0.02271511245817237 YYLNHDWPF 9 Unmodified _YYLNHDWPF_ 0 0 0 ENSG00000147138|ENST00000645147|GPR174 ENSG00000147138|ENST00000645147|GPR174 ENSG00000147138|ENST00000645147|GPR174 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 627.7811889648438 2 627.782556 1253.55056 NaN NaN NaN NaN NaN NaN NaN 84.119 1 83.619 83.119 84.119 -0.49961 0 0 0 0.84369 1 46036 46036 2.3027 0.4585 1 81603 5826 54683 55821 94899 94899 -0.06607445045119675 YYLNLIELF 9 Unmodified _YYLNLIELF_ 0 0 0 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 594.3221435546875 2 594.320983 1186.62741 -0.74612 -0.00044344 3.0365 0.0018047 2.2904 0.0013612 594.3229659045495 101.88 0.23723 101.83 101.76 101.99 -0.045853 12 7 3 0 0 0 0.10925 1 56612 56612 32.117 21.293 1 48627000 81604 6750 54684 55822 94900 94900 0.041563534513670675 YYLNLIELF 9 Unmodified _YYLNLIELF_ 0 0 0 nc|ENSG00000160752|P14324-2|FDPS;ENSG00000160752|ENST00000368356|FDPS;ENST00000471117.5_1_1:155278696-155288124:+|nuORF;ENST00000461507.5_1_1:155279855-155288124:+|nuORF;ENST00000470171.5_1_1:155279855-155288545:+|nuORF nc|ENSG00000160752|P14324-2|FDPS nc|ENSG00000160752|P14324-2|FDPS MULTI-MSMS AL20221201_MKP_PDAC_01 4 594.323486328125 2 594.320983 1186.62741 0.61133 0.00036333 1.3187 0.00078371 1.93 0.001147 594.3217926012687 102.23 0.13596 96.056 95.957 96.093 -6.1757 16 5 4 0 0 0 0.0086179 1 68597 68597 89.427 41.678 1 51293000 81605 6750 54684 55822 94901 94901 0.041563534513670675 YYLNRTHML 9 Unmodified _YYLNRTHML_ 0 0 0 ENSG00000145982|ENST00000274680|FARS2 ENSG00000145982|ENST00000274680|FARS2 ENSG00000145982|ENST00000274680|FARS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 404.2059936523438 3 404.206098 1209.59646 1.206 0.00048749 -0.33561 -0.00013566 0.87044 0.00035184 404.2059238436825 42.633 0.3186 37.949 37.845 38.163 -4.6846 31 20 2 0 0 0 0.14 2 25750 25750;25883 27.223 11.074 1 10846000 81606 5743 54685 55823 94902;94903 94902 4.876865477854153E-05 YYLPCFERFT 10 Unmodified _YYLPCFERFT_ 0 0 0 REV__ENSG00000196663|ENST00000359520|TECPR2 REV__ENSG00000196663|ENST00000359520|TECPR2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 446.8776245117188 3 446.877758 1337.61144 0.36566 0.00016341 -0.19456 -8.6944E-05 0.1711 7.6462E-05 446.87757146070214 58.891 0.53472 58.891 58.56 59.095 0 65 23 3 0 0 0 0.70734 1 32699 32699 2.086 0 1 3824000 + 81607 23858 54686 55824 94904 94904 -0.04385676057177079 YYLPCFERFT 10 Unmodified _YYLPCFERFT_ 0 0 0 REV__ENSG00000196663|ENST00000359520|TECPR2 REV__ENSG00000196663|ENST00000359520|TECPR2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 446.877758 1337.61144 0.24433 0.00010919 0.53133 0.00023744 0.77566 0.00034662 446.87809729258316 59.285 0.42409 58.794 58.604 59.028 -0.49079 -0.048376 0.00069946 NaN 2.086 24 19 2 NaN NaN NaN NaN 0 NaN NaN 0 1363100 + 81608 23858 54686 55824 -0.04385676057177079 YYLPDEQA 8 Unmodified _YYLPDEQA_ 0 0 0 nc|ENSG00000166535|A8K2U0-2|A2ML1;ENSG00000166535|ENST00000299698|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 nc|ENSG00000166535|A8K2U0-2|A2ML1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 499.7251892089844 2 499.726915 997.439277 NaN NaN NaN NaN NaN NaN NaN 11.483 1 11.495 10.995 11.995 0.012355 0 0 0 0.97444 1 5667 5667 0.79363 0.10326 1 81609 7506 54687 55825 94905 94905 -0.05954504473038469 YYLPFKDQL 9 Unmodified _YYLPFKDQL_ 0 0 0 ENSG00000102763|ENST00000379310|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;nc|ENSG00000102763|A3KMH1-2|VWA8 ENSG00000102763|ENST00000379310|VWA8 ENSG00000102763|ENST00000379310|VWA8 MULTI-MSMS AL20221201_MKP_PDAC_01 4 396.5424499511719 3 396.209613 1185.60701 0.77065 0.00030534 1.394 0.00055231 2.1646 0.00085765 396.5433243867986 28.292 0.3003 25.144 25.022 25.323 -3.1482 23 15 2 0 0 0 0.43515 1 15792 15792 10.8 1.2555 1 6752700 81610 2063 54688 55826 94906 94906 0.021631827915825852 YYLPQLYEL 9 Unmodified _YYLPQLYEL_ 0 0 0 nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF nc|ENSG00000180263|Q6ZV73-2|FGD6 nc|ENSG00000180263|Q6ZV73-2|FGD6 MSMS AL20221201_MKP_PDAC_01 4 601.311279296875 2 601.310615 1200.60668 NaN NaN NaN NaN NaN NaN NaN 99.599 1 93.423 92.923 93.923 -6.1757 0 0 0 0.43505 1 66377 66377 18.135 5.6034 1 81611 8890 54689 55827 94907 94907 0.01439763071721245 YYLQGGFNKF 10 Unmodified _YYLQGGFNKF_ 0 0 0 nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8070678710938 2 618.806031 1235.59751 1.0288 0.0006366 0.40738 0.00025209 1.4361 0.00088869 618.8062514068893 57.669 0.23769 57.603 57.476 57.714 -0.066036 37 11 4 0 0 0 4.3778E-05 1 31367 31367 120.45 95.051 1 8956700 81612 7136 54690 55828 94908 94908 -0.010865854939538622 YYLQGGFNKF 10 Unmodified _YYLQGGFNKF_ 0 0 0 nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 nc|ENSG00000164086|Q16829-2|DUSP7 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8055419921875 2 618.806031 1235.59751 NaN NaN NaN NaN NaN NaN NaN 57.802 1 57.736 57.236 58.236 -0.066036 0 0 0 0.92825 1 31468 31468 6.7232 0.96273 1 81613 7136 54690 55828 94909 94909 -0.010865854939538622 YYLRNGERI 9 Unmodified _YYLRNGERI_ 0 0 0 ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000204264|P28062-2|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 ENSG00000204264|ENST00000374882|PSMB8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.2117614746094 3 395.212128 1182.61456 NaN NaN NaN NaN NaN NaN NaN 28.481 1 28.481 27.981 28.981 0 0 0 0 0.46232 1 14713 14713 12.175 3.7304 1 81614 10257 54691 55829 94910 94910 0.030553351118669525 YYLRYLEKY 9 Unmodified _YYLRYLEKY_ 0 0 0 nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 nc|ENSG00000189079|Q68CP9-3|ARID2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 437.2334594726562 3 437.564168 1309.67067 1.2915 0.0005651 -1.1802 -0.00051641 0.11128 4.8693E-05 437.5635977167435 47.053 0.44962 47.02 46.814 47.263 -0.033417 49 21 3 0 0 0 0.57757 1 25271 25271 2.7352 1.9587 1 56566000 81615 9728 54692 55830 94911 94911 0.028225432286490104 YYLSDSPLL 9 Unmodified _YYLSDSPLL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000075218|ENST00000454366|GTSE1 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 535.7745361328125 2 535.773865 1069.53318 -0.36025 -0.00019301 -1.3803 -0.00073951 -1.7405 -0.00093252 535.77332822495 76.975 0.3111 76.496 76.365 76.676 -0.47945 23 13 2 0 0 0 0.095049 1 42160 42160 34.187 14.748 1 847340 81616 15906 54693 55831 94912 94912 0.001192146292396501 YYLSDSPLL 9 Unmodified _YYLSDSPLL_ 0 0 0 GTSE1-ATXN10|1|fusion;ENSG00000075218|ENST00000454366|GTSE1 GTSE1-ATXN10|1|fusion GTSE1-ATXN10|1|fusion MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 535.773865 1069.53318 0.27415 0.00014688 1.1346 0.0006079 1.4088 0.00075478 535.7747115555616 76.479 0.26733 76.479 76.37 76.637 0 -0.008061 0.00075488 NaN 34.187 18 10 2 NaN NaN NaN NaN 0 NaN NaN 0 420260 81617 15906 54693 55831 0.001192146292396501 YYLSEEATLF 10 Unmodified _YYLSEEATLF_ 0 0 0 REV__nc|ENSG00000132958|Q6XPS3-6|TPTE2 REV__nc|ENSG00000132958|Q6XPS3-6|TPTE2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8036499023438 2 618.295162 1234.57577 0.60644 0.00037496 1.9802 0.0012243 2.5866 0.0015993 618.2931598864421 52.497 0.46748 52.063 51.749 52.216 -0.43367 59 22 4 0 0 0 0.6192 1 28249 28249 11.64 2.2572 1 11316000 + 81618 19895 54694 55832 94913 94913 -0.032134350331944006 YYLSKIEEL 9 Unmodified _YYLSKIEEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.8099975585938 2 579.308072 1156.60159 0.25737 0.0001491 -0.072729 -4.2133E-05 0.18464 0.00010697 579.3079425462189 58.76 0.31812 58.76 58.583 58.902 0 45 13 4 0 0 0 0.0082548 2 32674 32674;32786 96.367 64.061 1 27037000 81619 1458 54695 55833 94914;94915 94914 0.029554592091017184 YYLSKIEEL 9 Unmodified _YYLSKIEEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.309326171875 2 579.308072 1156.60159 0.33907 0.00019643 0.33387 0.00019341 0.67295 0.00038984 579.3083440029421 59.248 0.40722 58.757 58.514 58.921 -0.49079 61 18 4 0 0 0 0.085319 2 32188 32188;32294 36.506 9.6225 1 16232000 81620 1458 54695 55833 94916;94917 94916 0.029554592091017184 YYLSKIEEL 9 Unmodified _YYLSKIEEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.308349609375 2 579.308072 1156.60159 0.43127 0.00024984 0.96102 0.00055673 1.3923 0.00080656 579.3086380188207 94.329 0.3075 93.908 93.743 94.05 -0.42044 36 16 3 0 0 0 0.53666 1 51600 51600 5.2307 0.90143 1 993330 81621 1458 54695 55833 94918 94918 0.029554592091017184 YYLSKIEEL 9 Unmodified _YYLSKIEEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.3092041015625 2 579.308072 1156.60159 0.83366 0.00048295 1.1606 0.00067237 1.9943 0.0011553 579.3086665208542 58.891 0.24225 58.83 58.679 58.922 -0.060722 17 11 2 0 0 0 0.20428 1 32098 32098 22.736 2.2827 1 1873700 81622 1458 54695 55833 94919 94919 0.029554592091017184 YYLSKIEEL 9 Unmodified _YYLSKIEEL_ 0 0 0 nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 nc|ENSG00000087191|P62195-2|PSMC5 MULTI-MSMS AL20221201_MKP_PDAC_01 4 579.307373046875 2 579.308072 1156.60159 0.78849 0.00045678 0.43946 0.00025458 1.228 0.00071136 579.3079743526637 64.98 0.64766 58.804 58.574 59.221 -6.1757 73 35 3 0 0 0 0.013609 2 42084 42084;42216 70.332 25.987 1 20369000 81623 1458 54695 55833 94920;94921 94920 0.029554592091017184 YYLSLPPEM 9 Unmodified _YYLSLPPEM_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20221201_MKP_PDAC_01 4 556.7715454101562 2 556.770268 1111.52598 1.1428 0.00063626 0.93808 0.00052229 2.0809 0.0011586 556.7699856879948 89.809 1.3211 83.634 82.986 84.307 -6.1757 140 74 3 0 0 0 0.023164 3 59526 59378;59526;59663 60.39 47.858 1 13338000 81624 1033 54696 55834 94922;94923;94924 94923 -0.025318412428305237 YYLSLPPEM 9 Unmodified _YYLSLPPEM_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MULTI-MSMS AL20221201_MKP_PDAC_01 4 557.2713012695312 2 556.770268 1111.52598 1.2551 0.00069879 -2.1409 -0.001192 -0.88577 -0.00049317 557.2690281965808 90.959 0.55376 84.783 84.505 85.059 -6.1757 42 32 2 0 0 0 0.087258 2 59948 59948;60091 36.044 12.896 1 17074000 81625 1033 54696 55834 94925;94926 94925 -0.025318412428305237 YYLSLPPEM 9 Unmodified _YYLSLPPEM_ 0 0 0 nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS nc|ENSG00000070669|P08243-3|ASNS nc|ENSG00000070669|P08243-3|ASNS MSMS AL20221201_MKP_PDAC_01 4 556.7711791992188 2 556.770268 1111.52598 NaN NaN NaN NaN NaN NaN NaN 90.551 1 84.375 83.875 84.875 -6.1757 0 0 0 0.096036 1 59820 59820 44.407 30.501 1 81626 1033 54696 55834 94927 94927 -0.025318412428305237 YYLTDNLTF 9 Unmodified _YYLTDNLTF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 575.2784423828125 2 575.276772 1148.53899 1.022 0.00058796 1.6943 0.00097468 2.7163 0.0015626 575.2771777179598 80.485 0.34579 79.992 79.83 80.176 -0.49247 36 13 4 0 0 0 0.37804 1 44045 44045 13.508 7.7475 1 906870 81627 10025 54697 55835 94928 94928 -0.029336868591144594 YYLTDNLTF 9 Unmodified _YYLTDNLTF_ 0 0 0 ENSG00000197943|ENST00000564138|PLCG2;ENST00000567980.5_1_16:81819579-81955027:+|nuORF ENSG00000197943|ENST00000564138|PLCG2 ENSG00000197943|ENST00000564138|PLCG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 575.276611328125 2 575.276772 1148.53899 1.3758 0.00079146 0.047463 2.7304E-05 1.4233 0.00081877 575.2768310287165 88.171 0.35898 81.995 81.83 82.189 -6.1757 34 19 2 0 0 0 0.016184 1 58135 58135 67.344 33.241 1 12627000 81628 10025 54697 55835 94929 94929 -0.029336868591144594 YYLTDVDRI 9 Unmodified _YYLTDVDRI_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 579.79736328125 2 579.295496 1156.57644 -0.48347 -0.00028007 -0.23752 -0.0001376 -0.721 -0.00041767 579.2951797333022 55.671 0.35384 55.671 55.437 55.791 0 79 29 3 0 0 0 0.0090524 2 30889 30889;30993 85.642 17.561 1 26416000 81629 1481 54698 55836 94930;94931 94930 0.004414044065242706 YYLTDVDRI 9 Unmodified _YYLTDVDRI_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.2943115234375 2 579.295496 1156.57644 -0.75373 -0.00043663 0.56718 0.00032857 -0.18655 -0.00010806 579.2960142396879 56.191 0.2302 55.705 55.593 55.823 -0.48554 20 11 2 0 0 0 0.017075 1 30498 30498 66.457 7.7779 1 7739600 81630 1481 54698 55836 94932 94932 0.004414044065242706 YYLTDVDRI 9 Unmodified _YYLTDVDRI_ 0 0 0 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 ENSG00000088256|ENST00000078429|GNA11 MSMS AL20221201_MKP_PDAC_01 4 579.297119140625 2 579.295496 1156.57644 NaN NaN NaN NaN NaN NaN NaN 62.44 1 56.264 55.764 56.764 -6.1757 0 0 0 0.10661 1 40288 40288 41.956 7.5538 1 81631 1481 54698 55836 94933 94933 0.004414044065242706 YYLTFVQEL 9 Unmodified _YYLTFVQEL_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 588.3037109375 2 588.30279 1174.59103 1.905 0.0011207 -0.71887 -0.00042292 1.1861 0.00069777 588.3021883692701 93.113 0.31108 93.136 92.959 93.27 0.022987 18 11 2 0 0 0 0.052168 1 51786 51786 44.407 21.259 1 2362200 81632 5825 54699 55837 94934 94934 0.010714765546708804 YYLTFVQEL 9 Unmodified _YYLTFVQEL_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MSMS AL20221201_MKP_PDAC_01 4 588.3023071289062 2 588.30279 1174.59103 NaN NaN NaN NaN NaN NaN NaN 99.828 1 93.652 93.152 94.152 -6.1757 0 0 0 0.071041 1 66603 66603 50.855 31.493 1 81633 5825 54699 55837 94935 94935 0.010714765546708804 YYLTFVQEL 9 Unmodified _YYLTFVQEL_ 0 0 0 nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 nc|ENSG00000147130|Q14202-2|ZMYM3 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 588.30279 1174.59103 0.36142 0.00021263 1.3332 0.0007843 1.6946 0.00099693 588.3033796814606 93.59 0.26496 93.133 92.98 93.245 -0.4574 -0.046937 0.0017244 NaN 44.407 22 11 3 NaN NaN NaN NaN 0 NaN NaN 0 329030 81634 5825 54699 55837 0.010714765546708804 YYLTHGLYL 9 Unmodified _YYLTHGLYL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 571.7979736328125 2 571.797675 1141.5808 0.72419 0.00041409 0.088614 5.0669E-05 0.8128 0.00046476 571.7976722025495 67.674 0.46806 67.191 66.984 67.453 -0.48219 51 20 3 0 0 0 0.0086179 2 37007 36907;37007 89.427 58.79 1 58338000 81635 1972 54700 55838 94936;94937 94937 0.0156691362010406 YYLTHGLYL 9 Unmodified _YYLTHGLYL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 571.7991943359375 2 571.797675 1141.5808 0.48797 0.00027902 0.24901 0.00014238 0.73698 0.0004214 571.7977421519065 67.134 0.51839 67.152 66.917 67.435 0.018028 65 25 3 0 0 0 0.0077963 2 36772 36772;36882 109.63 69.672 1 222790000 81636 1972 54700 55838 94938;94939 94938 0.0156691362010406 YYLTHGLYL 9 Unmodified _YYLTHGLYL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MSMS AL20221201_MKP_PDAC_01 4 571.7972412109375 2 571.797675 1141.5808 1.0381 0.00059357 -0.5434 -0.00031072 0.49468 0.00028285 571.7972645360663 80.172 1.9444 73.996 73.251 75.195 -6.1757 337 113 4 0 0 0 0.0036753 10 53060 52182;52310;52440;52569;52697;52820;52940;53060;53183;53311 123.1 84.945 1 239190000 81637 1972 54700 55838 94940;94941;94942;94943;94944;94945;94946;94947;94948;94949 94947 0.0156691362010406 YYLTHGLYL 9 Unmodified _YYLTHGLYL_ 0 0 0 ENSG00000101464|ENST00000217446|PIGU;nc|ENSG00000101464|Q9H490-2|PIGU ENSG00000101464|ENST00000217446|PIGU ENSG00000101464|ENST00000217446|PIGU MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 2 571.797675 1141.5808 0.5465 0.00031249 0.94283 0.00053911 1.4893 0.00085159 571.7982416998568 67.283 0.2338 67.283 67.108 67.342 0 0.074289 0.00084315 NaN 109.63 14 9 2 NaN NaN NaN NaN 0 NaN NaN 0 653120 81638 1972 54700 55838 0.0156691362010406 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 630.3070068359375 2 630.306395 1258.59824 0.3312 0.00020876 0.46674 0.00029419 0.79794 0.00050295 630.3065699826224 49.181 0.30795 49.181 48.969 49.277 0 41 14 4 0 0 0 0.0030316 1 27042 27042 122.18 86.052 1 9277900 81639 8158;16462 54701 55839 94950 94950 -0.020717908449114475 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.305908203125 2 630.306395 1258.59824 0.51392 0.00032393 0.24378 0.00015366 0.7577 0.00047758 630.3064839531928 49.599 0.33406 49.207 49.04 49.374 -0.3923 79 16 7 0 0 0 0.061642 2 26622 26622;26733 55.503 38.06 1 74398000 81640 8158;16462 54701 55839 94951;94952 94951 -0.020717908449114475 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 630.30517578125 2 630.306395 1258.59824 0.62192 0.000392 -0.051715 -3.2597E-05 0.57021 0.00035941 630.3062285872471 50.515 0.2003 50.101 49.992 50.192 -0.41351 16 9 2 0 0 0 0.093652 1 27214 27214 55.503 38.39 1 3335200 81641 8158;16462 54701 55839 94953 94953 -0.020717908449114475 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 630.3063354492188 2 630.306395 1258.59824 0.55558 0.00035019 0.463 0.00029183 1.0186 0.00064202 630.3064539805215 49.261 0.28514 49.218 49.07 49.355 -0.043694 33 13 3 0 0 0 0.1379 1 26566 26566 40.239 40.239 1 5399300 81642 8158;16462 54701 55839 94954 94954 -0.020717908449114475 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 630.3067626953125 2 630.306395 1258.59824 0.97262 0.00061305 0.28258 0.00017811 1.2552 0.00079116 630.3064101998584 55.253 0.73513 49.331 48.903 49.638 -5.9211 135 45 5 0 0 0 2.4958E-05 3 35296 35017;35148;35296 147.06 103.2 1 255920000 81643 8158;16462 54701 55839 94955;94956;94957 94957 -0.020717908449114475 YYLTPDGQRF 10 Unmodified _YYLTPDGQRF_ 0 0 0 ENSG00000171903|ENST00000402119|CYP4F11;ENST00000392846.7_1_19:15989583-16003262:-|nuORF;nc|ENSG00000186115|P78329-2|CYP4F2;ENST00000587671.2_1_19:15996764-16008275:-|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENST00000592279.6_1_19:15757939-15770192:+|nuORF;ENSG00000186529|ENST00000221307|CYP4F3;ENSG00000186115|ENST00000221700|CYP4F2 ENSG00000171903|ENST00000402119|CYP4F11;nc|ENSG00000186529|Q08477-2|CYP4F3 ENSG00000171903|ENST00000402119|CYP4F11 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 630.306395 1258.59824 1.5174 0.00095644 -0.95277 -0.00060054 0.56465 0.00035591 630.8076458175296 50.198 0.18372 50.149 50.027 50.21 -0.048824 0.02388 -0.00064696 NaN 55.503 13 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1026800 81644 8158;16462 54701 55839 -0.020717908449114475 YYLVKMSDRE 10 Unmodified _YYLVKMSDRE_ 0 0 0 REV__ENSG00000143195|ENST00000271417|ILDR2 REV__ENSG00000143195|ENST00000271417|ILDR2 MSMS AL20221201_MKP_PDAC_01 4 652.3233642578125 2 652.321188 1302.62782 NaN NaN NaN NaN NaN NaN NaN 50.433 1 44.894 44.394 45.394 -5.5391 0 0 0 0.50479 1 31635 31635 24.021 4.7636 1 + 81645 20612 54702 55840 94958 94958 -0.011385948910856314 YYLWMCECH 9 Unmodified _YYLWMCECH_ 0 0 0 ENST00000567535.5_1_15:75287957-75305364:+|nuORF ENST00000567535.5_1_15:75287957-75305364:+|nuORF ENST00000567535.5_1_15:75287957-75305364:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 624.2387084960938 2 624.237755 1246.46096 NaN NaN NaN NaN NaN NaN NaN 0.076832 1 0.076832 -0.42317 0.57683 0 0 0 0 0.85798 1 37 37 0.52476 0.066424 1 81646 15437 54703 55841 94959 94959 -0.15241482311989785 YYLYGNYPAG 10 Unmodified _YYLYGNYPAG_ 0 0 0 ENSG00000103489|ENST00000261381|XYLT1 ENSG00000103489|ENST00000261381|XYLT1 ENSG00000103489|ENST00000261381|XYLT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.771240234375 2 590.769114 1179.52368 1.8831 0.0011125 2.1263 0.0012562 4.0094 0.0023687 590.7698829405981 93.991 0.29885 94.005 93.837 94.135 0.014252 19 11 2 0 0 0 0.54684 1 52258 52258 13.906 1.3745 1 1331000 81647 2144 54704 55842 94960 94960 -0.058905536562861016 YYLYVLWQA 9 Unmodified _YYLYVLWQA_ 0 0 0 REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5 REV__nc|ENSG00000107897|Q5T8D3-4|ACBD5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 406.8795471191406 3 406.877975 1217.6121 NaN NaN NaN NaN NaN NaN NaN 7.8786 1 7.8938 7.3938 8.3938 0.015238 0 0 0 0.85798 1 3927 3927 0.23584 0 1 + 81648 18584 54705 55843 94961 94961 0.011994866541954252 YYMDYLAAL 9 Unmodified _YYMDYLAAL_ 0 0 0 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 ENSG00000126067|ENST00000373237|PSMB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 561.7630004882812 2 561.762443 1121.51033 0.63801 0.00035841 0.8501 0.00047755 1.4881 0.00083596 561.7624202312916 99.68 0.14142 93.504 93.416 93.558 -6.1757 20 8 3 0 0 0 0.28047 1 66474 66474 18.135 3.5533 1 47087000 81649 3924 54706 55844 94962 94962 -0.04556127759883566 YYMDYLMF 8 Unmodified _YYMDYLMF_ 0 0 0 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 ENSG00000124302|ENST00000650847|CHST8 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 573.2392578125 2 573.237747 1144.46094 NaN NaN NaN NaN NaN NaN NaN 63.883 1 63.883 63.383 64.383 0 0 0 0 0.97444 1 35628 35628 2.5775 0.92486 1 81650 3775 54707 55845 94963 94963 -0.1055115904032391 YYMEHHGQL 9 Unmodified _YYMEHHGQL_ 0 0 0 nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 nc|ENSG00000179295|Q06124-3|PTPN11 MULTI-MSMS AL20221201_MKP_PDAC_01 4 393.1756896972656 3 393.174686 1176.50223 0.73569 0.00028925 0.51794 0.00020364 1.2536 0.00049289 393.174914031813 28.102 0.25128 24.954 24.826 25.077 -3.1482 33 13 3 0 0 0 0.53666 1 15651 15651 2.9952 0 1 13066000 81651 8825 54708 55846 94964 94964 -0.07896261956648232 YYMEKELANF 10 Oxidation (M) _YYM(Oxidation (M))EKELANF_ YYM(1)EKELANF YYM(55)EKELANF 0 0 1 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 662.2985229492188 2 662.299921 1322.58529 0.066663 4.4151E-05 0.082418 5.4585E-05 0.14908 9.8737E-05 662.3000682253692 47.178 0.42865 47.178 46.999 47.427 0 61 19 4 0 0 0 0.061704 2 25773 25773;25884 55.235 49.029 1 9235600 81652 2355 54709 55847 94965;94966 94965 409 -0.06309990019303768 YYMEKELANF 10 Oxidation (M) _YYM(Oxidation (M))EKELANF_ YYM(1)EKELANF YYM(42)EKELANF 0 0 1 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 662.2998046875 2 662.299921 1322.58529 0.6613 0.00043798 -0.54664 -0.00036204 0.11466 7.594E-05 662.8013625183445 47.525 0.32779 47.172 46.959 47.287 -0.3526 31 15 3 0 0 0 0.13297 1 25435 25435 41.956 35.232 1 3349600 81653 2355 54709 55847 94967 94967 409 -0.06309990019303768 YYMEKELANF 10 Oxidation (M) _YYM(Oxidation (M))EKELANF_ YYM(1)EKELANF YYM(91)EKELANF 0 0 1 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 662.3016357421875 2 662.299921 1322.58529 0.4367 0.00028922 0.10043 6.6512E-05 0.53712 0.00035574 662.3005025492772 53.025 0.31599 47.221 47.067 47.383 -5.8042 23 17 2 0 0 0 0.0081376 1 33452 33452 91.085 73.972 1 21824000 81654 2355 54709 55847 94968 94968 409 -0.06309990019303768 YYMELTKLLL 10 Oxidation (M) _YYM(Oxidation (M))ELTKLLL_ YYM(1)ELTKLLL YYM(77)ELTKLLL 0 0 1 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 651.8548583984375 2 651.854332 1301.69411 0.5142 0.00033519 -2.1719 -0.0014157 -1.6577 -0.0010805 651.852461714461 80.461 0.33894 80.518 80.364 80.703 0.057587 26 14 2 0 0 0 0.018732 1 44467 44467 76.825 57.568 1 14322000 81655 4305 54710 55848 94969 94969 773 0.055332209509742825 YYMELTKLLL 10 Oxidation (M) _YYM(Oxidation (M))ELTKLLL_ YYM(1)ELTKLLL YYM(110)ELTKLLL 0 0 1 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 651.8546752929688 2 651.854332 1301.69411 1.2616 0.00082236 -0.72607 -0.00047329 0.53551 0.00034907 651.8540589568748 97.196 0.25616 91.021 90.861 91.117 -6.1757 37 14 4 0 0 0 0.0021808 1 64376 64376 107.56 84.827 1 41298000 81656 4305 54710 55848 94970 94970 773 0.055332209509742825 YYMELTKLLL 10 Unmodified _YYMELTKLLL_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 643.8579711914062 2 643.856875 1285.6992 2.0269 0.0013051 2.882 0.0018556 4.9089 0.0031606 643.8585486239311 93.835 0.32259 93.858 93.689 94.012 0.022987 20 12 2 0 0 0 0.095786 1 52170 52170 47.594 33.98 1 4678900 81657 4305 54710 55849 94971 94971 0.06777524813605851 YYMELTKLLL 10 Unmodified _YYMELTKLLL_ 0 0 0 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 ENSG00000131153|ENST00000253462|GINS2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 643.8582153320312 2 643.856875 1285.6992 0.17134 0.00011032 0.29612 0.00019066 0.46746 0.00030098 644.358801385539 99.85 0.19299 93.675 93.611 93.804 -6.1757 30 14 3 0 0 0 0.00089362 1 66612 66612 114.19 78.059 1 103430000 81658 4305 54710 55849 94972 94972 0.06777524813605851 YYMESEGLEE 10 Unmodified _YYMESEGLEE_ 0 0 0 REV__nc|ENSG00000129204|P35125-2|USP6 REV__nc|ENSG00000129204|P35125-2|USP6 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 625.251953125 2 625.250094 1248.48563 0.0074589 4.6637E-06 0.84061 0.00052559 0.84807 0.00053026 625.2508130239247 53.447 0.21526 53.384 53.284 53.499 -0.063423 16 10 2 0 0 0 0.70951 1 28977 28977 1.8442 0 1 1922700 + 81659 19656 54711 55850 94973 94973 -0.12866852423871933 YYMKDLPTSF 10 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ YYM(1)KDLPTSF YYM(100)KDLPTSF 0 0 1 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 640.7969360351562 2 640.797014 1279.57948 0.46908 0.00030058 -0.61607 -0.00039477 -0.14699 -9.419E-05 640.7966419650788 49.48 0.37535 49.088 48.902 49.277 -0.3923 57 18 4 0 0 0 0.0044938 2 26553 26553;26665 100.09 78.554 1 23422000 81660 10689 54712 55851 94974;94975 94974 1713 -0.04913088530997811 YYMKDLPTSF 10 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ YYM(1)KDLPTSF YYM(50)KDLPTSF 0 0 1 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 640.7984008789062 2 640.797014 1279.57948 0.42144 0.00027006 0.38874 0.0002491 0.81018 0.00051916 640.7973303969869 49.125 0.30701 49.082 48.908 49.215 -0.04369 40 14 4 0 0 0 0.087043 1 26506 26506 49.554 37.314 1 5237500 81661 10689 54712 55851 94976 94976 1713 -0.04913088530997811 YYMKDLPTSF 10 Oxidation (M) _YYM(Oxidation (M))KDLPTSF_ YYM(1)KDLPTSF YYM(100)KDLPTSF 0 0 1 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 640.7977294921875 2 640.797014 1279.57948 0.94348 0.00060458 -0.54396 -0.00034857 0.39952 0.00025601 640.7966021558445 55.1 0.453 49.179 48.973 49.426 -5.9211 78 28 3 0 0 0 0.0042881 2 35092 34957;35092 100.71 76.688 1 89153000 81662 10689 54712 55851 94977;94978 94978 1713 -0.04913088530997811 YYMKDLPTSF 10 Unmodified _YYMKDLPTSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 632.799560546875 2 632.799557 1263.58456 -0.19377 -0.00012262 0.47007 0.00029746 0.27631 0.00017485 632.7998439012518 61.656 0.25181 61.169 61.032 61.284 -0.48764 25 11 3 0 0 0 0.38026 1 33563 33563 32.786 15.673 1 2698200 81663 10689 54712 55852 94979 94979 -0.03668784668366243 YYMKDLPTSF 10 Unmodified _YYMKDLPTSF_ 0 0 0 ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF ENSG00000241973|ENST00000255882|PI4KA ENSG00000241973|ENST00000255882|PI4KA MULTI-MSMS AL20221201_MKP_PDAC_01 4 632.8004760742188 2 632.799557 1263.58456 0.81798 0.00051762 -0.86274 -0.00054594 -0.044759 -2.8323E-05 632.7996859856689 68.93 0.71307 62.755 62.332 63.045 -6.1757 81 39 3 0 0 0 4.7323E-05 3 44972 44853;44972;45103 147.24 78.136 1 36531000 81664 10689 54712 55852 94980;94981;94982 94981 -0.03668784668366243 YYMTQTEEL 9 Oxidation (M) _YYM(Oxidation (M))TQTEEL_ YYM(1)TQTEEL YYM(44)TQTEEL 0 0 1 ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF ENSG00000123213|ENST00000380985|NLN ENSG00000123213|ENST00000380985|NLN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 597.2550659179688 2 597.255179 1192.49581 0.41199 0.00024606 -0.74449 -0.00044465 -0.3325 -0.00019859 597.2552521698652 38.798 0.30938 38.798 38.62 38.929 0 30 13 3 0 0 0 0.052168 1 20708 20708 44.407 32.166 1 5323600 81665 3691 54713 55853 94983 94983 648 -0.09274244698667644 YYMTSVTKQF 10 Unmodified _YYMTSVTKQF_ 0 0 0 REV__ENST00000462151.5_1_1:155228611-155230144:-|nuORF REV__ENST00000462151.5_1_1:155228611-155230144:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3038330078125 2 634.305007 1266.59546 NaN NaN NaN NaN NaN NaN NaN 57.371 1 57.371 56.871 57.871 0 0 0 0 0.92825 1 31925 31925 6.7232 0.99131 1 + 81666 19044 54714 55854 94984 94984 -0.027173822940767423 YYNAAGFNKL 10 Unmodified _YYNAAGFNKL_ 0 0 0 ENSG00000156467|ENST00000287022|UQCRB;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB;ENST00000518876.1_1_8:97245315-97245435:-|nuORF ENSG00000156467|ENST00000287022|UQCRB ENSG00000156467|ENST00000287022|UQCRB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.7901611328125 2 580.790381 1159.56621 0.3691 0.00021437 -0.52716 -0.00030617 -0.15806 -9.1799E-05 580.7897792099421 46.179 0.17685 45.842 45.762 45.939 -0.33664 15 8 2 0 0 0 0.041224 1 24726 24726 62.573 34.086 1 3963100 81667 6455 54715 55855 94985 94985 -0.0071915852806796465 YYNAAGFNKL 10 Unmodified _YYNAAGFNKL_ 0 0 0 ENSG00000156467|ENST00000287022|UQCRB;ENST00000519322.1_1_8:97243965-97247767:-|nuORF;nc|ENSG00000156467|P14927-2|UQCRB;ENST00000518876.1_1_8:97245315-97245435:-|nuORF ENSG00000156467|ENST00000287022|UQCRB ENSG00000156467|ENST00000287022|UQCRB MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 580.790381 1159.56621 0.80332 0.00046656 0.85039 0.0004939 1.6537 0.00096046 580.790845543808 45.932 0.15289 45.904 45.844 45.997 -0.028015 0.030814 0.0011238 NaN 62.573 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1437400 81668 6455 54715 55855 -0.0071915852806796465 YYNCYPHHF 9 Unmodified _YYNCYPHHF_ 0 0 0 REV__ENSG00000110079|ENST00000337908|MS4A4A REV__ENSG00000110079|ENST00000337908|MS4A4A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 622.2508544921875 2 622.253108 1242.49166 -0.35702 -0.00022216 -2.5819 -0.0016066 -2.9389 -0.0018288 622.2512334901834 34.689 0.13864 34.689 34.614 34.753 0 12 6 3 0 0 0 0.4887 1 18310 18310 7.9102 0 1 1771900 + 81669 18690 54716 55856 94986 94986 -0.1198824461107506 YYNDCYAVL 9 Carbamidomethyl (C) _YYNDC(Carbamidomethyl (C))YAVL_ YYNDC(1)YAVL YYNDC(59)YAVL 0 1 0 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 ENSG00000100151|ENST00000356976|PICK1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.7530517578125 2 590.752607 1179.49066 0.57926 0.0003422 -0.31097 -0.00018371 0.26828 0.00015849 590.7527692113824 66.331 0.47043 60.155 59.898 60.368 -6.1757 62 26 3 0 0 0 0.024882 2 43053 43053;43177 58.679 41.737 1 23709000 81670 1761 54717 55857 94987;94988 94987 168 -0.09190503770673786 YYNELLGAM 9 Unmodified _YYNELLGAM_ 0 0 0 REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B REV__nc|ENSG00000031003|Q9NYF5-3|FAM13B MULTI-SECPEP AL20221201_MKP_PDAC_01 4 536.7826538085938 2 537.252243 1072.48993 0.96253 0.00051712 -1.7337 -0.00093144 -0.77119 -0.00041432 537.2519445762324 71.906 0.30403 65.731 65.556 65.86 -6.1757 31 17 2 0 0 0 0.20528 1 47068 47068 8.5933 3.8373 1 33909000 + 81671 17146 54718 55858 94989 94989 -0.043412984196947946 YYNESEFDL 9 Unmodified _YYNESEFDL_ 0 0 0 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MSMS AL20221201_MKP_PDAC_01 4 393.8314514160156 3 393.832871 1178.47678 NaN NaN NaN NaN NaN NaN NaN 12.73 1 10.248 9.7478 10.748 -2.482 0 0 0 0.85798 1 6445 6445 0.23584 0 1 + 81672 24462 54719 55859 94990 94990 -0.1053145799808135 YYNESEFDL 9 Unmodified _YYNESEFDL_ 0 0 0 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 REV__nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4 MSMS AL20221201_MKP_PDAC_01 4 393.8336181640625 3 393.832871 1178.47678 NaN NaN NaN NaN NaN NaN NaN 13.803 1 11.3 10.8 11.8 -2.5029 0 0 0 0.85798 1 6997 6997 0.23584 0 1 + 81673 24462 54719 55859 94991 94991 -0.1053145799808135 YYNINQVTL 9 Unmodified _YYNINQVTL_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX nc|ENSG00000008441|Q14938-2|NFIX nc|ENSG00000008441|Q14938-2|NFIX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.2908935546875 2 564.290214 1126.56587 0.26655 0.00015041 -0.90374 -0.00050997 -0.63719 -0.00035956 564.2890718596195 64.2 0.39578 64.2 64.1 64.496 0 23 17 2 0 0 0 0.39863 1 35809 35809 12.532 5.2423 1 810230 81674 392 54720 55860 94992 94992 0.007654217520894235 YYNINQVTL 9 Unmodified _YYNINQVTL_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX nc|ENSG00000008441|Q14938-2|NFIX nc|ENSG00000008441|Q14938-2|NFIX MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 564.2885131835938 2 564.290214 1126.56587 0.63884 0.00036049 0.15457 8.7224E-05 0.79341 0.00044772 564.2898117052316 64.783 0.36308 64.298 64.147 64.51 -0.48512 37 16 3 0 0 0 0.038285 2 35330 35330;35431 50.855 31.598 1 4672300 81675 392 54720 55860 94993;94994 94993 0.007654217520894235 YYNINQVTL 9 Unmodified _YYNINQVTL_ 0 0 0 nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX nc|ENSG00000008441|Q14938-2|NFIX nc|ENSG00000008441|Q14938-2|NFIX MULTI-SECPEP AL20221201_MKP_PDAC_01 4 564.7567138671875 2 564.290214 1126.56587 1.3099 0.00073919 0.50229 0.00028344 1.8122 0.0010226 564.2908084306007 71.204 0.28941 65.029 64.88 65.169 -6.1757 20 13 2 0 0 0 0.17275 1 46570 46570 21.747 11.563 1 16793000 81676 392 54720 55860 94995 94995 0.007654217520894235 YYNKHCFF 8 Unmodified _YYNKHCFF_ 0 0 0 REV__CON__Q2TBQ1 REV__CON__Q2TBQ1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 561.2469482421875 2 561.247295 1120.48004 0.35448 0.00019895 -0.12507 -7.0197E-05 0.22941 0.00012875 561.2471310005755 78.408 0.41995 78.408 78.197 78.617 0 32 19 3 0 0 0 0.80624 1 43637 43637 2.8892 1.045 1 894540 + + 81677 16871 54721 55861 94996 94996 -0.07538441634414994 YYNKNEPTF 9 Unmodified _YYNKNEPTF_ 0 0 0 REV__ENSG00000134827|ENST00000257264|TCN1 REV__ENSG00000134827|ENST00000257264|TCN1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 588.196533203125 2 588.272021 1174.52949 0.19068 0.00011217 -0.68776 -0.00040459 -0.49709 -0.00029242 588.2712465408431 69.24 0.14207 69.24 69.127 69.269 0 7 5 2 0 0 0 0.21242 1 38549 38549 5.2307 0 1 566080 + 81678 20016 54722 55862 94997 94997 -0.050794551446415426 YYNKVSTVF 9 Unmodified _YYNKVSTVF_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 560.8400268554688 2 560.787307 1119.56006 0.55768 0.00031274 0.94309 0.00052888 1.5008 0.00084161 560.7874794669328 45.719 0.18138 45.691 45.582 45.763 -0.028011 13 8 2 0 0 0 0.15672 1 24537 24537 26.884 11.036 1 6694700 81679 2503 54723 55863 94998 94998 0.005063232404381779 YYNKVSTVF 9 Unmodified _YYNKVSTVF_ 0 0 0 ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A ENSG00000107581|ENST00000369144|EIF3A ENSG00000107581|ENST00000369144|EIF3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 560.7866821289062 2 560.787307 1119.56006 1.1397 0.00063911 0.6508 0.00036496 1.7905 0.0010041 560.787717189106 51.213 0.37395 45.564 45.415 45.789 -5.649 48 22 3 0 0 0 0.013609 1 32296 32296 70.332 43.448 1 74624000 81680 2503 54723 55863 94999 94999 0.005063232404381779 YYNNHSSSNSF 11 Unmodified _YYNNHSSSNSF_ 0 0 0 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 ENSG00000091009|ENST00000265271|RBM27 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 660.26806640625 2 660.267998 1318.52144 -0.44439 -0.00029342 1.4013 0.00092521 0.95688 0.0006318 660.2686491517285 22.507 0.16674 22.507 22.383 22.55 0 13 7 2 0 0 0 0.72952 1 11439 11439 1.4819 0 1 416800 81681 1575 54724 55864 95000 95000 -0.1250763413202094 YYNPHLLLNTL 11 Unmodified _YYNPHLLLNTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 680.8677978515625 2 680.86662 1359.71869 0.67304 0.00045825 0.86104 0.00058625 1.5341 0.0010445 680.8671329331341 74.075 0.2817 73.599 73.487 73.768 -0.47588 34 11 4 0 0 0 0.42951 2 40521 40521;40621 31.268 23.659 1 3614400 81682 10362 54725 55865 95001;95002 95001 0.05321617148729274 YYNPHLLLNTL 11 Unmodified _YYNPHLLLNTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 680.8697509765625 2 680.86662 1359.71869 0.4569 0.00031109 0.077206 5.2567E-05 0.53411 0.00036366 680.8666356448753 73.581 0.4194 73.625 73.384 73.803 0.043983 75 18 5 0 0 0 1.4047E-08 2 40460 40460;40557 128.93 96.895 1 121240000 81683 10362 54725 55865 95003;95004 95003 0.05321617148729274 YYNPHLLLNTL 11 Unmodified _YYNPHLLLNTL_ 0 0 0 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 ENSG00000205339|ENST00000379719|IPO7 MULTI-MSMS AL20221201_MKP_PDAC_01 4 681.3689575195312 2 680.86662 1359.71869 1.4455 0.00098421 -0.65579 -0.0004465 0.78974 0.00053771 680.8660803860927 89.536 0.90632 83.36 82.92 83.826 -6.1757 171 50 4 0 0 0 9.664E-09 5 58865 58865;58995;59116;59241;59360 143.91 105.29 1 212550000 81684 10362 54725 55865 95005;95006;95007;95008;95009 95005 0.05321617148729274 YYNRCYMDA 9 Unmodified _YYNRCYMDA_ 0 0 0 ENSG00000127578|ENST00000319070|WFIKKN1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant;ENSG00000173714|ENST00000311378|WFIKKN2 ENSG00000127578|ENST00000319070|WFIKKN1;WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant WFIKKN2|p.A310Pfs*18|1|0.1|ENSG00000173714|chr17:50840213-50840219|CAGGCTG/-|frameshift_variant MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 599.7371826171875 2 599.736434 1197.45831 0.75679 0.00045388 0.91241 0.0005472 1.6692 0.0010011 599.7370302490572 81.656 0.34095 81.161 80.972 81.313 -0.4952 51 13 5 0 0 0 0.61256 1 44764 44764 0.6015 0 1 2352200 81685 4018;8358 54726 55866 95010 95010 -0.13251614445266569 YYNTAVKL 8 Unmodified _YYNTAVKL_ 0 0 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 486.2627258300781 2 486.263468 970.512382 -0.37003 -0.00017993 -1.9915 -0.0009684 -2.3615 -0.0011483 486.26190404091767 41.159 0.15296 41.159 41.065 41.218 0 18 7 3 0 0 0 0.27285 1 22184 22184 58.679 16.584 1 2275300 81686 1553 54727 55867 95011 95011 0.025946690402406603 YYNTAVKL 8 Unmodified _YYNTAVKL_ 0 0 0 nc|ENSG00000090316|Q7L5Y9-4|MAEA;nc|ENSG00000090316|Q7L5Y9-3|MAEA;nc|ENSG00000090316|Q7L5Y9-2|MAEA;ENSG00000090316|ENST00000303400|MAEA;ENST00000503693.1_1_4:1283701-1322488:+|nuORF;nc|ENSG00000090316|Q7L5Y9-5|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA nc|ENSG00000090316|Q7L5Y9-4|MAEA MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 486.2633972167969 2 486.263468 970.512382 -0.0087177 -4.2391E-06 -0.94452 -0.00045928 -0.95323 -0.00046352 486.26323334857653 41.471 0.21018 41.168 41.028 41.238 -0.30304 15 9 2 0 0 0 0.38465 1 21990 21990 46.021 15.796 1 2481300 81687 1553 54727 55867 95012 95012 0.025946690402406603 YYNVLWEKL 9 Unmodified _YYNVLWEKL_ 0 0 0 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 ENSG00000170881|ENST00000303545|RNF139 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 409.8832397460938 3 409.88513 1226.63356 NaN NaN NaN NaN NaN NaN NaN 16.563 1 16.563 16.063 17.063 0 0 0 0 0.84369 1 8088 8088 1.1933 0.41681 1 81688 8037 54728 55868 95013 95013 0.029308716829063997 YYNVQIFLL 9 Unmodified _YYNVQIFLL_ 0 0 0 nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2 nc|ENSG00000078795|Q9NZM6-6|PKD2L2 nc|ENSG00000078795|Q9NZM6-6|PKD2L2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 391.8847045898438 3 391.549859 1171.62775 -0.0083654 -3.2755E-06 0.21466 8.4051E-05 0.2063 8.0775E-05 391.55026716283794 19.312 0.17832 19.319 19.197 19.376 0.0078506 16 10 3 0 0 0 0.61256 1 9788 9788 0.26902 0 1 996850 81689 1254 54729 55869 95014 95014 0.04879773171251145 YYPAGTQLF 9 Unmodified _YYPAGTQLF_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 530.26025390625 2 530.260925 1058.5073 0.4937 0.00026179 -1.0066 -0.00053375 -0.51289 -0.00027196 530.2604593211023 67.645 0.65458 67.163 66.844 67.498 -0.48218 87 28 4 0 0 0 0.12841 1 36956 36956 30.225 13.112 1 10010000 81690 2205 54730 55870 95015 95015 -0.019616348223962632 YYPAGTQLF 9 Unmodified _YYPAGTQLF_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MSMS AL20221201_MKP_PDAC_01 4 530.26220703125 2 530.260925 1058.5073 NaN NaN NaN NaN NaN NaN NaN 73.998 1 67.822 67.322 68.322 -6.1757 0 0 0 0.043758 1 48386 48386 60.39 24.263 1 81691 2205 54730 55870 95016 95016 -0.019616348223962632 YYPAGTQLF 9 Unmodified _YYPAGTQLF_ 0 0 0 nc|ENSG00000104413|Q6NXG1-2|ESRP1;nc|ENSG00000104413|Q6NXG1-5|ESRP1;nc|ENSG00000104413|Q6NXG1-4|ESRP1;nc|ENSG00000104413|Q6NXG1-3|ESRP1;ENSG00000104413|ENST00000433389|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 nc|ENSG00000104413|Q6NXG1-2|ESRP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 530.260925 1058.5073 0.60006 0.00031819 3.1392 0.0016646 3.7392 0.0019828 530.2612908261938 67.027 0.18207 67.045 66.961 67.143 0.018036 -0.058926 0.0042617 NaN 30.225 10 8 2 NaN NaN NaN NaN 0 NaN NaN 0 1286900 81692 2205 54730 55870 -0.019616348223962632 YYPDHIKGLIL 11 Unmodified _YYPDHIKGLIL_ 0 0 0 ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 ENSG00000139324|ENST00000266712|TMTC3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 444.5838012695312 3 444.583451 1330.72852 1.2837 0.00057073 0.032539 1.4466E-05 1.3163 0.0005852 444.9177995427956 86.823 0.41927 80.648 80.528 80.947 -6.1757 41 22 2 0 0 0 0.557 2 57288 57288;57426 13.519 7.3268 1 13414000 81693 5146 54731 55871 95017;95018 95017 0.07638805154101647 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 591.7953491210938 2 591.795132 1181.57571 0.070295 4.16E-05 -0.83401 -0.00049357 -0.76372 -0.00045197 591.7946317642738 70.105 0.43781 69.626 69.382 69.819 -0.47903 79 23 4 0 0 0 0.078417 2 38266 38266;38369 38.151 25.62 1 38860000 81694 1747 54732 55872 95019;95020 95019 -0.00781390242514135 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 591.7943115234375 2 591.795132 1181.57571 0.83065 0.00049158 -0.14325 -8.4775E-05 0.6874 0.0004068 591.7949562964527 81.202 1.3063 75.026 74.296 75.602 -6.1757 162 73 3 0 0 0 0.013323 6 53147 53027;53147;53278;53409;53536;53688 71.134 47.344 1 39609000 81695 1747 54732 55872 95021;95022;95023;95024;95025;95026 95022 -0.00781390242514135 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MSMS AL20221201_MKP_PDAC_01 4 591.7947998046875 2 591.795132 1181.57571 NaN NaN NaN NaN NaN NaN NaN 80.034 1 73.858 73.358 74.358 -6.1757 0 0 0 0.050352 1 52489 52489 57.471 37.018 1 81696 1747 54732 55872 95027 95027 -0.00781390242514135 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MSMS AL20221201_MKP_PDAC_01 4 591.7946166992188 2 591.795132 1181.57571 NaN NaN NaN NaN NaN NaN NaN 80.333 1 74.157 73.657 74.657 -6.1757 0 0 0 0.15618 1 52704 52704 36.044 12.024 1 81697 1747 54732 55872 95028 95028 -0.00781390242514135 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MSMS AL20221201_MKP_PDAC_01 4 591.7959594726562 2 591.795132 1181.57571 NaN NaN NaN NaN NaN NaN NaN 80.569 1 74.393 73.893 74.893 -6.1757 0 0 0 0.10545 1 52864 52864 42.095 15.826 1 81698 1747 54732 55872 95029 95029 -0.00781390242514135 YYPEHFTLL 9 Unmodified _YYPEHFTLL_ 0 0 0 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 ENSG00000100065|ENST00000251973|CARD10 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 591.795132 1181.57571 0.27106 0.00016041 -0.4738 -0.00028039 -0.20274 -0.00011998 591.794765069271 69.486 0.2854 69.517 69.422 69.707 0.030914 -0.054692 0.00029493 NaN 38.151 37 16 3 NaN NaN NaN NaN 0 NaN NaN 0 16513000 81699 1747 54732 55872 -0.00781390242514135 YYPEHTSVL 9 Unmodified _YYPEHTSVL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 554.7672119140625 2 554.769114 1107.52368 0.77621 0.00043062 0.71065 0.00039425 1.4869 0.00082487 554.7692153373998 38.567 0.19388 38.567 38.426 38.62 0 21 9 4 0 0 0 0.18465 2 20584 20584;20638 24.674 1.9376 1 4115300 81700 35 54733 55873 95030;95031 95030 -0.025785536562807465 YYPEHTSVL 9 Unmodified _YYPEHTSVL_ 0 0 0 ARHGAP5-L2HGDH|1|fusion;ARHGAP5|p.F1260Lfs*61|1|0.22|ENSG00000100852|chr14:32117200-32117200|T/-|frameshift_variant;nc|ENSG00000100852|Q13017-2|ARHGAP5;ENSG00000100852|ENST00000345122|ARHGAP5;ARHGAP5|p.E893*|1|0.24|ENSG00000100852|chr14:32093338-32093339|-/T|frameshift_variant ARHGAP5-L2HGDH|1|fusion ARHGAP5-L2HGDH|1|fusion MULTI-MSMS AL20221201_MKP_PDAC_01 4 554.7736206054688 2 554.769114 1107.52368 0.6146 0.00034096 -2.508 -0.0013914 -1.8934 -0.0010504 554.7689713745533 44.26 0.76463 39.408 38.898 39.662 -4.852 154 52 4 0 0 0 0.078417 1 26676 26676 38.151 15.415 1 58563000 81701 35 54733 55873 95032 95032 -0.025785536562807465 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 589.2830200195312 2 589.281857 1176.54916 0.36799 0.00021685 1.5 0.00088391 1.868 0.0011008 589.2824864581293 94.667 0.30313 94.246 94.068 94.371 -0.42044 45 16 3 0 0 0 0.54444 2 51746 51648;51746 4.756 0.42677 1 1136000 81702 2028 54734 55874 95033;95034 95034 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 589.2831420898438 2 589.281857 1176.54916 2.0135 0.0011865 0.55828 0.00032898 2.5718 0.0015155 589.2821345509536 94.208 0.40631 94.222 94.003 94.41 0.014244 27 14 2 0 0 0 0.12841 1 52305 52305 30.225 17.984 1 3347900 81703 2028 54734 55874 95035 95035 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 589.2826538085938 2 589.281857 1176.54916 0.65302 0.00038481 0.94354 0.00055601 1.5966 0.00094083 589.2824277575556 99.944 0.14729 93.768 93.691 93.838 -6.1757 19 10 2 0 0 0 0.042911 1 66690 66690 48.346 30.211 1 75178000 81704 2028 54734 55874 95036 95036 -0.032050791338633644 YYPELAFQF 9 Unmodified _YYPELAFQF_ 0 0 0 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 ENSG00000102218|ENST00000218340|RP2 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 589.281857 1176.54916 0.36799 0.00021685 1.5 0.00088391 1.868 0.0011008 589.2824864581293 94.667 0.30313 94.246 94.068 94.371 -0.42044 0.012124 0.00042575 NaN 30.225 45 16 3 NaN NaN NaN NaN 0 NaN NaN 0 1136000 81705 2028 54734 55874 -0.032050791338633644 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 618.8232421875 2 618.320983 1234.62741 -0.78265 -0.00048393 0.56643 0.00035023 -0.21622 -0.00013369 618.3216264562886 77.877 0.41927 77.394 77.143 77.562 -0.4826 104 31 4 0 0 0 0.1773 2 42566 42566;42669 25.399 16.654 1 54383000 81706 6670 54735 55875 95037;95038 95037 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.3230590820312 2 618.320983 1234.62741 0.35069 0.00021684 0.016955 1.0484E-05 0.36765 0.00022733 618.3209126567796 77.286 0.544 77.336 77.108 77.652 0.050102 85 22 6 0 0 0 0.070838 2 42575 42575;42682 39.957 20.7 1 157980000 81707 6670 54735 55875 95039;95040 95039 0.019483534513710765 YYPEYKLLF 9 Unmodified _YYPEYKLLF_ 0 0 0 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 ENSG00000159720|ENST00000290949|ATP6V0D1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 618.3201293945312 2 618.320983 1234.62741 0.10989 6.7946E-05 0.51427 0.00031798 0.62416 0.00038593 618.3212109729725 93.027 1.0486 86.851 86.299 87.348 -6.1757 238 71 5 0 0 0 0.028475 5 61239 61239;61366;61497;61628;61751 56.177 34.43 1 391050000 81708 6670 54735 55875 95041;95042;95043;95044;95045 95041 0.019483534513710765 YYPFSYLF 8 Unmodified _YYPFSYLF_ 0 0 0 ENSG00000076685|ENST00000404739|NT5C2;nc|ENSG00000076685|P49902-2|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 ENSG00000076685|ENST00000404739|NT5C2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 550.260986328125 2 550.260394 1098.50623 0.92357 0.0005082 1.8315 0.0010078 2.755 0.001516 550.2594682808474 101.32 0.10113 95.149 95.091 95.192 -6.1757 12 5 3 0 0 0 0.48233 1 67977 67977 36.466 4.3492 1 21252000 81709 1191 54736 55876 95046 95046 -0.03907849191296009 YYPKYLSKI 9 Unmodified _YYPKYLSKI_ 0 0 0 nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 392.2211608886719 3 392.221742 1173.6434 0.42414 0.00016636 -2.3466 -0.00092037 -1.9224 -0.00075401 392.22067151125145 43.102 0.20554 43.086 42.978 43.184 -0.015671 16 9 2 0 0 0 0.19349 1 23098 23098 23.801 2.2641 1 4491900 81710 4181 54737 55877 95047 95047 0.06352059688288136 YYPKYLSKI 9 Unmodified _YYPKYLSKI_ 0 0 0 nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 nc|ENSG00000130150|Q8NHP6-2|MOSPD2 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 392.221742 1173.6434 1.0344 0.00040571 0.63338 0.00024843 1.6678 0.00065413 392.5562860054331 48.042 0.25149 42.808 42.599 42.851 -5.2339 -0.13871 0.00055069 NaN 23.801 25 15 2 NaN NaN NaN NaN 0 NaN NaN 0 7723800 81711 4181 54737 55877 0.06352059688288136 YYPLEEVLT 9 Unmodified _YYPLEEVLT_ 0 0 0 ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF ENSG00000119912|ENST00000265986|IDE ENSG00000119912|ENST00000265986|IDE MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 376.1924438476562 3 376.193741 1125.55939 NaN NaN NaN NaN NaN NaN NaN 21.431 1 21.431 20.931 21.931 0 0 0 0 0.84211 1 10843 10843 2.4985 0 1 81712 3478 54738 55878 95048 95048 0.001634838007248618 YYPNGEEEF 9 Unmodified _YYPNGEEEF_ 0 0 0 REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2 REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 574.2321166992188 2 574.232561 1146.45057 NaN NaN NaN NaN NaN NaN NaN 69.661 1 69.661 69.161 70.161 0 0 0 0 0.84564 1 38808 38808 2.0598 0.40713 1 + 81713 19814 54739 55879 95049 95049 -0.11679727169553189 YYPNPPLVL 9 Unmodified _YYPNPPLVL_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 538.2966918945312 2 538.294768 1074.57498 NaN NaN NaN NaN NaN NaN NaN 80.45 1 80.45 79.95 80.95 0 0 0 0 0.70111 1 44670 44670 9.3474 2.9933 1 81714 8753 54740 55880 95050 95050 0.040678151084193814 YYPNPPLVL 9 Unmodified _YYPNPPLVL_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.2950439453125 2 538.294768 1074.57498 0.70359 0.00037874 -0.25989 -0.0001399 0.4437 0.00023884 538.2946800000906 80.964 0.48952 80.472 80.152 80.641 -0.49248 66 22 4 0 0 0 0.019979 2 44294 44294;44393 63.563 25.089 1 11790000 81715 8753 54740 55880 95051;95052 95051 0.040678151084193814 YYPNPPLVL 9 Unmodified _YYPNPPLVL_ 0 0 0 ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 ENSG00000178425|ENST00000319550|NT5DC1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1075.581176757812 1 1075.58226 1074.57498 1.1145 0.0011987 0.41007 0.00044106 1.5246 0.0016398 1075.5810887600624 87.921 0.45919 81.745 81.57 82.029 -6.1757 35 23 2 0 0 0 0.0086179 2 58112 57988;58112 101.72 50.867 1 17672000 81716 8753 54740 55880 95053;95054 95054 0.040678151084193814 YYPPFDKI 8 Unmodified _YYPPFDKI_ 0 0 0 ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB ENSG00000051382|ENST00000674063|PIK3CB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 521.765869140625 2 521.765843 1041.51713 NaN NaN NaN NaN NaN NaN NaN 88.196 1 88.196 87.696 88.696 0 0 0 0 0.97444 1 48822 48822 0.79363 0 1 81717 733 54741 55881 95055 95055 -0.0019644681699446664 YYPPPRLRQLL 11 Unmodified _YYPPPRLRQLL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 472.9446411132812 3 472.610111 1414.8085 -0.34894 -0.00016491 0.34549 0.00016328 -0.0034501 -1.6305E-06 472.61027535166096 56.256 0.45764 56.187 55.942 56.4 -0.068741 40 23 2 0 0 0 0.47137 2 30638 30518;30638 17.863 10.887 1 7424500 81718 6383 54742 55882 95056;95057 95057 0.11769291547943794 YYPPPRLRQLL 11 Unmodified _YYPPPRLRQLL_ 0 0 0 ENSG00000155363|ENST00000369645|MOV10;nc|ENSG00000155363|Q9HCE1-2|MOV10;ENST00000468624.5_1_1:113217534-113241292:+|nuORF;ENST00000496577.5_1_1:113231344-113241292:+|nuORF ENSG00000155363|ENST00000369645|MOV10 ENSG00000155363|ENST00000369645|MOV10 MULTI-MSMS AL20221201_MKP_PDAC_01 4 472.6106262207031 3 472.610111 1414.8085 1.0101 0.00047736 0.41373 0.00019553 1.4238 0.0006729 472.6102938242611 88.782 0.73408 82.607 82.029 82.763 -6.1757 56 40 2 0 0 0 0.29431 1 58598 58598 27.088 20.051 1 8868800 81719 6383 54742 55882 95058 95058 0.11769291547943794 YYPPSQYLL 9 Unmodified _YYPPSQYLL_ 0 0 0 nc|ENSG00000148356|Q6UWE0-2|LRSAM1;ENSG00000148356|ENST00000300417|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 nc|ENSG00000148356|Q6UWE0-2|LRSAM1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 572.291015625 2 572.289682 1142.56481 0.79084 0.00045259 0.77222 0.00044193 1.5631 0.00089452 572.2900115474532 72.573 0.72787 72.097 71.878 72.606 -0.47609 57 33 3 0 0 0 0.25681 1 39687 39687 19.257 2.1704 1 1369500 81720 5924 54743 55883 95059 95059 -0.0007679261680095806 YYPRKYDAKF 10 Unmodified _YYPRKYDAKF_ 0 0 0 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 ENSG00000083635|ENST00000379161|NUFIP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 450.9019775390625 3 450.89955 1349.67682 0.64553 0.00029107 -0.4942 -0.00022283 0.15134 6.8237E-05 450.8992681209879 26.093 0.092779 26.12 26.067 26.159 0.026951 6 3 2 0 0 0 0.67459 1 13541 13541 3.0723 1.9625 1 2923300 81721 1368 54744 55884 95060 95060 0.015970614601656052 YYPRSTVPY 9 Unmodified _YYPRSTVPY_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 382.5246276855469 3 382.525713 1144.55531 -0.3293 -0.00012597 -0.23207 -8.8773E-05 -0.56137 -0.00021474 382.52556458576623 30.921 0.14247 30.921 30.831 30.974 0 11 6 2 0 0 0 0.53666 1 16090 16090 2.9952 0.26005 1 1135800 + 81722 23672 54745 55885 95061 95061 -0.011185609023186771 YYPRSTVPY 9 Unmodified _YYPRSTVPY_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MATCH-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 3 382.525713 1144.55531 -0.3293 -0.00012597 -0.23207 -8.8773E-05 -0.56137 -0.00021474 382.52556458576623 30.921 0.14247 30.921 30.831 30.974 0 0.058848 -0.00026513 NaN 2.9952 11 6 2 NaN NaN NaN NaN 0 NaN NaN 0 1135800 + 81723 23672 54745 55885 -0.011185609023186771 YYPRSTVPY 9 Unmodified _YYPRSTVPY_ 0 0 0 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 REV__nc|ENSG00000187908|Q9UGM3-9|DMBT1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 382.525713 1144.55531 0.4161 0.00015917 0.15059 5.7603E-05 0.56669 0.00021677 382.86020031661786 30.906 0.19914 30.803 30.665 30.864 -0.10269 -0.058848 0.000174 NaN 2.9952 12 7 2 NaN NaN NaN NaN 0 NaN NaN 0 1297100 + 81724 23672 54745 55885 -0.011185609023186771 YYPRTPGP 8 Unmodified _YYPRTPGP_ 0 0 0 ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 ENSG00000070366|ENST00000263073|SMG6 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 475.2709350585938 2 475.74016 949.465767 0.20474 9.7403E-05 0.34145 0.00016244 0.54619 0.00025984 475.74019846333636 37.57 0.11619 37.57 37.529 37.645 0 9 5 2 0 0 0 8.7369 1 19978 19978 12.532 0.89125 1 1265800 81725 1024 54746 55886 95062 95062 -0.0109877079104308 YYPRVEYGF 9 Unmodified _YYPRVEYGF_ 0 0 0 nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF nc|ENSG00000244731|P0C0L4-2|C4A nc|ENSG00000244731|P0C0L4-2|C4A MSMS AL20221201_MKP_PDAC_01 4 597.28466796875 2 597.284931 1192.55531 NaN NaN NaN NaN NaN NaN NaN 60.617 1 54.469 53.969 54.969 -6.1478 0 0 0 0.098496 1 39010 39010 43.772 14.691 1 81726 10579 54747 55887 95063 95063 -0.033265609023374054 YYPSFGPVF 9 Unmodified _YYPSFGPVF_ 0 0 0 REV__ENSG00000140836|ENST00000268489|ZFHX3 REV__ENSG00000140836|ENST00000268489|ZFHX3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7577514648438 2 538.758018 1075.50148 0.71989 0.00038785 -0.84559 -0.00045557 -0.1257 -6.7722E-05 538.757566028774 80.749 0.53308 80.256 80.006 80.539 -0.49248 69 22 4 0 0 0 0.46577 1 44283 44283 9.3474 0.75416 1 15412000 + 81727 20496 54748 55888 95064 95064 -0.033247333340341356 YYPSFLPYF 9 Unmodified _YYPSFLPYF_ 0 0 0 ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44 ENST00000508478.1_1_5:175957081-175957609:-|nuORF ENST00000508478.1_1_5:175957081-175957609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 598.7867431640625 2 598.786776 1195.559 -0.005192 -3.1089E-06 -1.3344 -0.00079905 -1.3396 -0.00080216 598.7861665500311 85.384 0.44447 85.384 85.115 85.559 0 40 18 3 0 0 0 0.54444 2 47259 47259;47355 4.756 1.4747 1 912030 81728 5753 54749 55889 95065;95066 95065 -0.030958911284869828 YYPSFLPYF 9 Unmodified _YYPSFLPYF_ 0 0 0 ENST00000508478.1_1_5:175957081-175957609:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44 ENST00000508478.1_1_5:175957081-175957609:-|nuORF ENST00000508478.1_1_5:175957081-175957609:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 598.7867431640625 2 598.786776 1195.559 0.53442 0.00032 -1.703 -0.0010197 -1.1686 -0.00069973 598.7862714037669 85.854 0.64619 85.353 85.1 85.747 -0.5015 78 27 4 0 0 0 0.39863 1 47031 47031 12.532 1.7076 1 2363400 81729 5753 54749 55889 95067 95067 -0.030958911284869828 YYPSIVANRW 10 Unmodified _YYPSIVANRW_ 0 0 0 nc|ENSG00000103222|P33527-4|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 nc|ENSG00000103222|P33527-4|ABCC1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.8250732421875 2 634.824755 1267.63496 NaN NaN NaN NaN NaN NaN NaN 59.954 1 59.901 59.401 60.401 -0.053062 0 0 0 0.61997 1 32690 32690 20.415 8.1739 1 81730 2112 54750 55890 95068 95068 0.011845057716755036 YYPSTPGRYSI 11 Unmodified _YYPSTPGRYSI_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 652.320556640625 2 652.319502 1302.62445 -0.20038 -0.00013072 0.58133 0.00037921 0.38095 0.0002485 652.3200544330598 44.789 0.28187 44.473 44.346 44.628 -0.31585 38 15 3 0 0 0 0.067723 2 23880 23880;23976 49.527 29.074 1 41057000 81731 16209;15895 54751 55891 95069;95070 95069 -0.01475521673410185 YYPSTPGRYSI 11 Unmodified _YYPSTPGRYSI_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.318359375 2 652.319502 1302.62445 0.26999 0.00017612 -0.51032 -0.00033289 -0.24033 -0.00015677 652.3193254528725 44.494 0.27043 44.472 44.325 44.595 -0.022064 28 13 3 0 0 0 0.053529 1 23839 23839 53.404 37.557 1 15133000 81732 16209;15895 54751 55891 95071 95071 -0.01475521673410185 YYPSTPGRYSI 11 Unmodified _YYPSTPGRYSI_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 652.32080078125 2 652.319502 1302.62445 NaN NaN NaN NaN NaN NaN NaN 44.625 1 44.603 44.103 45.103 -0.022064 0 0 0 0.43177 1 23947 23947 27.223 13.317 1 81733 16209;15895 54751 55891 95072 95072 -0.01475521673410185 YYPSTPGRYSI 11 Unmodified _YYPSTPGRYSI_ 0 0 0 FLNB-SLMAP|7|fusion;FLNB-SLMAP|6|fusion;FLNB-SLMAP|5|fusion;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-3|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB FLNB-SLMAP|7|fusion;nc|ENSG00000136068|O75369-8|FLNB nc|ENSG00000136068|O75369-8|FLNB MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3204956054688 2 652.319502 1302.62445 1.0986 0.00071663 0.12414 8.098E-05 1.2227 0.00079761 652.3197290553628 50.198 0.48991 44.658 44.424 44.914 -5.5391 113 31 5 0 0 0 0.053529 2 31494 31356;31494 53.404 42.58 1 271900000 81734 16209;15895 54751 55891 95073;95074 95074 -0.01475521673410185 YYPVRHHL 8 Unmodified _YYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 542.7875366210938 2 542.787976 1083.5614 NaN NaN NaN NaN NaN NaN NaN 24.715 1 24.739 24.239 25.239 0.024429 0 0 0 0.97444 1 12761 12761 2.5775 0.27475 1 81735 9805 54752 55892 95075 95075 0.02296002119851437 YYPVRHHL 8 Unmodified _YYPVRHHL_ 0 0 0 nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP nc|ENSG00000196367|Q9Y4A5-2|TRRAP MSMS AL20221201_MKP_PDAC_01 4 542.7881469726562 2 542.787976 1083.5614 NaN NaN NaN NaN NaN NaN NaN 27.995 1 24.847 24.347 25.347 -3.1482 0 0 0 0.25888 1 15568 15568 70.716 38.41 1 81736 9805 54752 55892 95076 95076 0.02296002119851437 YYQDCQNDL 9 Unmodified _YYQDCQNDL_ 0 0 0 ENST00000466027.1_1_13:96289346-96294343:-|nuORF ENST00000466027.1_1_13:96289346-96294343:-|nuORF ENST00000466027.1_1_13:96289346-96294343:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 581.2294921875 2 581.229496 1160.44444 0.78592 0.0004568 0.72608 0.00042202 1.512 0.00087882 581.2296743245124 75.862 0.55626 69.686 69.3 69.856 -6.1757 37 29 2 0 0 0 0.53666 1 49651 49651 5.2307 1.2863 1 8876100 81737 13748 54753 55893 95077 95077 -0.12936568672739668 YYQDQVDDF 9 Unmodified _YYQDQVDDF_ 0 0 0 ENSG00000132467|ENST00000254803|UTP3 ENSG00000132467|ENST00000254803|UTP3 ENSG00000132467|ENST00000254803|UTP3 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 596.279052734375 2 596.743293 1191.47203 0.06096 3.6377E-05 0.3018 0.0001801 0.36276 0.00021647 596.7433546447606 46.792 0.2627 46.792 46.678 46.941 0 26 12 3 0 0 0 0.19891 1 25544 25544 11.64 11.64 1 5970400 81738 4411 54754 55894 95078 95078 -0.11604342140844892 YYQDTPKQI 9 Unmodified _YYQDTPKQI_ 0 0 0 ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 578.287353515625 2 578.287671 1154.56079 -0.095457 -5.5202E-05 0.52383 0.00030293 0.42838 0.00024773 578.2881904526325 29.32 0.32821 29.32 29.161 29.489 0 45 15 5 0 0 0 0.022461 2 15143 15143;15240 75.761 49.493 1 12349000 81739 698 54755 55895 95079;95080 95079 -0.010308821105354582 YYQDTPKQI 9 Unmodified _YYQDTPKQI_ 0 0 0 ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 ENSG00000048162|ENST00000614830|NOP16 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.287841796875 2 578.287671 1154.56079 0.8927 0.00051624 -1.3158 -0.00076088 -0.42305 -0.00024465 578.2872793542417 33.329 0.32635 29.344 29.18 29.507 -3.9853 43 18 3 0 0 0 0.00052793 2 19050 19050;19172 171.09 119.46 1 39885000 81740 698 54755 55895 95081;95082 95081 -0.010308821105354582 YYQEVLQQL 9 Unmodified _YYQEVLQQL_ 0 0 0 ENSG00000015133|ENST00000389857|CCDC88C;ENST00000553437.1_1_14:91808648-91875041:-|nuORF ENSG00000015133|ENST00000389857|CCDC88C ENSG00000015133|ENST00000389857|CCDC88C MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 592.303466796875 2 592.303321 1182.59209 NaN NaN NaN NaN NaN NaN NaN 65.925 1 65.441 64.941 65.941 -0.48428 0 0 0 0.41346 1 35989 35989 19.257 11.347 1 81741 490 54756 55896 95083 95083 0.008096909235973726 YYQEYPMSI 9 Oxidation (M) _YYQEYPM(Oxidation (M))SI_ YYQEYPM(1)SI YYQEYPM(59)SI 0 0 1 ENST00000488743.6_1_2:27425876-27434347:-|nuORF;ENSG00000138074|ENST00000310574|SLC5A6 ENST00000488743.6_1_2:27425876-27434347:-|nuORF ENST00000488743.6_1_2:27425876-27434347:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 605.2603149414062 2 605.260265 1208.50598 0.19125 0.00011576 1.0874 0.00065814 1.2786 0.00077389 605.2605268057769 47.457 0.21941 47.457 47.339 47.558 0 19 9 3 0 0 0 0.024882 1 25983 25983 58.679 43.841 1 2383300 81742 5011 54757 55897 95084 95084 916 -0.08993636973445973 YYQGHIDGCI 10 Unmodified _YYQGHIDGCI_ 0 0 0 REV__ENSG00000186298|ENST00000335007|PPP1CC REV__ENSG00000186298|ENST00000335007|PPP1CC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 390.174072265625 3 390.174574 1167.50189 -0.28767 -0.00011224 0.089908 3.508E-05 -0.19776 -7.7163E-05 390.1746357920951 20.925 0.84016 20.954 20.582 21.422 0.028357 57 40 2 0 0 0 0.71276 1 10675 10675 0.62683 0 1 1447700 + 81743 22657 54758 55898 95085 95085 -0.07515681676500208 YYQGRRITI 9 Unmodified _YYQGRRITI_ 0 0 0 nc|ENSG00000105699|Q86X29-5|LSR;nc|ENSG00000105699|Q86X29-2|LSR;ENSG00000105699|ENST00000605618|LSR;nc|ENSG00000105699|Q86X29-3|LSR;nc|ENSG00000105699|Q86X29-4|LSR;nc|ENSG00000105699|Q86X29|LSR;nc|ENSG00000105699|Q86X29-6|LSR nc|ENSG00000105699|Q86X29-5|LSR nc|ENSG00000105699|Q86X29-5|LSR MULTI-MSMS AL20221201_MKP_PDAC_01 4 390.5530395507812 3 390.552374 1168.63529 1.264 0.00049364 0.46986 0.0001835 1.7338 0.00067714 390.5526257047622 34.876 0.44162 30.781 30.581 31.023 -4.0951 56 25 3 0 0 0 0.34999 1 20175 20175 19.362 8.5624 1 15809000 81744 2355 54759 55899 95086 95086 0.05771925491512775 YYQHIVTTL 9 Unmodified _YYQHIVTTL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 569.30224609375 2 569.300581 1136.58661 0.89694 0.00051063 -0.14054 -8.0009E-05 0.7564 0.00043062 569.3004222489318 47.743 0.20882 47.743 47.601 47.81 0 15 9 2 0 0 0 0.095405 1 26136 26136 34.102 18.255 1 2473900 81745 3184 54760 55900 95087 95087 0.023780121317713565 YYQHIVTTL 9 Unmodified _YYQHIVTTL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 569.3005981445312 2 569.300581 1136.58661 0.73426 0.00041802 -0.58164 -0.00033113 0.15262 8.6887E-05 569.3002195569071 47.934 0.32016 47.581 47.431 47.751 -0.3526 54 15 4 0 0 0 0.013323 2 25666 25666;25767 71.134 36.732 1 88493000 81746 3184 54760 55900 95088;95089 95088 0.023780121317713565 YYQHIVTTL 9 Unmodified _YYQHIVTTL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 569.3008422851562 2 569.300581 1136.58661 0.61706 0.00035129 -0.68545 -0.00039023 -0.068391 -3.8935E-05 569.300238140863 47.651 0.32766 47.612 47.477 47.805 -0.038643 41 15 4 0 0 0 0.015445 1 25659 25659 68.081 44.06 1 23763000 81747 3184 54760 55900 95090 95090 0.023780121317713565 YYQHIVTTL 9 Unmodified _YYQHIVTTL_ 0 0 0 nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 nc|ENSG00000116005|Q9UHG3-2|PCYOX1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 569.3006591796875 2 569.300581 1136.58661 1.1375 0.00064759 -0.55495 -0.00031593 0.58258 0.00033166 569.3002118000563 53.53 0.45999 47.726 47.498 47.958 -5.8042 90 29 4 0 0 0 0.015445 3 33864 33729;33864;33999 68.081 40.452 1 348200000 81748 3184 54760 55900 95091;95092;95093 95092 0.023780121317713565 YYQLRCYCL 9 Unmodified _YYQLRCYCL_ 0 0 0 REV__ENSG00000196990|ENST00000673969|FAM163B REV__ENSG00000196990|ENST00000673969|FAM163B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.7822875976562 2 612.780644 1223.54674 0.52679 0.0003228 -0.66676 -0.00040858 -0.13998 -8.5775E-05 612.7803772028412 69.796 0.38988 69.827 69.629 70.019 0.030914 70 19 5 0 0 0 0.40476 1 38324 38324 18.135 8.7519 1 27475000 + 81749 20625 54761 55901 95094 95094 -0.056095741348144657 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 634.3031616210938 2 634.303321 1266.59209 0.48829 0.00030972 -0.38282 -0.00024282 0.10547 6.6903E-05 634.302990827181 57.255 0.30787 57.255 57.087 57.395 0 34 13 3 0 0 0 0.021948 1 31816 31816 61.602 38.866 1 9199100 81750 7546 54762 55902 95095 95095 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 634.3037109375 2 634.303321 1266.59209 0.041591 2.6382E-05 -0.47377 -0.00030051 -0.43218 -0.00027413 634.3029871276093 57.831 0.47182 57.341 57.147 57.619 -0.48974 77 22 5 0 0 0 0.0087807 2 31368 31368;31467 106.94 88.794 1 150350000 81751 7546 54762 55902 95096;95097 95096 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.3038330078125 2 634.303321 1266.59209 0.75022 0.00047587 0.085297 5.4104E-05 0.83552 0.00052997 634.3033083608996 57.472 0.41267 57.406 57.201 57.614 -0.066036 75 20 5 0 0 0 0.0047067 2 31330 31225;31330 118.07 96.322 1 40467000 81752 7546 54762 55902 95098;95099 95099 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3037719726562 2 634.303321 1266.59209 0.70133 0.00044485 0.073684 4.6738E-05 0.77501 0.00049159 634.3032913005447 63.111 1.0705 56.935 56.563 57.634 -6.1757 149 58 4 0 0 0 0.00044362 3 40597 40597;40732;40865 145.13 116.64 1 486550000 81753 7546 54762 55902 95100;95101;95102 95100 -0.030543090764240333 YYQNYFEKL 9 Unmodified _YYQNYFEKL_ 0 0 0 nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 nc|ENSG00000166889|Q86TB9-2|PATL1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 634.3031616210938 2 634.303321 1266.59209 0.91318 0.00057924 0.022648 1.4365E-05 0.93583 0.0005936 634.3033203411344 63.573 0.95411 57.397 57.213 58.167 -6.1757 104 52 3 0 0 0 0.00065891 5 41010 41010;41151;41282;41427;41568 142.08 107.98 1 77285000 81754 7546 54762 55902 95103;95104;95105;95106;95107 95103 -0.030543090764240333 YYQQDEGYGN 10 Unmodified _YYQQDEGYGN_ 0 0 0 nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10 nc|ENSG00000182872|P98175-4|RBM10 nc|ENSG00000182872|P98175-4|RBM10 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 618.74365234375 2 618.743825 1235.4731 0.35285 0.00021832 0.028265 1.7489E-05 0.38111 0.00023581 618.7438388413377 91.4 0.33075 91.4 91.24 91.571 0 68 20 5 0 0 0 0.72607 1 50495 50495 0 0 1 1421000 81755 9097 54763 55903 95108 95108 -0.13522127771921078 YYQQLNTEL 9 Unmodified _YYQQLNTEL_ 0 0 0 ENST00000532045.5_1_11:836744-838189:+|nuORF;ENSG00000177697|ENST00000397420|CD151 ENST00000532045.5_1_11:836744-838189:+|nuORF ENST00000532045.5_1_11:836744-838189:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.286376953125 2 586.285128 1170.5557 1.3579 0.00079609 -0.096363 -5.6496E-05 1.2615 0.00073959 586.284946893016 58.99 0.38108 52.915 52.649 53.03 -6.0745 32 20 2 0 0 0 0.07916 1 37777 37777 37.974 7.3375 1 19875000 81756 8702 54764 55904 95109 95109 -0.022751859731215518 YYQSLQAHL 9 Unmodified _YYQSLQAHL_ 0 0 0 ENSG00000171124|ENST00000303225|FUT3;ENSG00000156413|ENST00000318336|FUT6;nc|ENSG00000156413|P51993-2|FUT6;ENSG00000130383|ENST00000588525|FUT5 ENSG00000171124|ENST00000303225|FUT3 ENSG00000171124|ENST00000303225|FUT3 MSMS AL20221201_MKP_PDAC_01 4 561.7838134765625 2 561.782556 1121.55056 NaN NaN NaN NaN NaN NaN NaN 49.435 1 44.039 43.539 44.539 -5.3961 0 0 0 0.065563 1 30887 30887 52.268 21 1 81757 8065 54765 55905 95110 95110 -0.005354450451022785 YYQSSSPPPF 10 Unmodified _YYQSSSPPPF_ 0 0 0 REV__ENST00000219169.8_1_16:67904840-67904954:+|nuORF REV__ENST00000219169.8_1_16:67904840-67904954:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7674560546875 2 586.766571 1171.51859 NaN NaN NaN NaN NaN NaN NaN 52.319 1 52.319 51.819 52.819 0 0 0 0 0.78298 1 28949 28949 13.042 1.4022 1 + 81758 24752 54766 55906 95111 95111 -0.06030857518908306 YYQSSVQYL 9 Unmodified _YYQSSVQYL_ 0 0 0 nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-3|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 nc|ENSG00000164818|Q86Y56-2|DNAAF5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 575.7750854492188 2 575.774396 1149.53424 0.14653 8.437E-05 -0.14592 -8.402E-05 0.00060781 3.4996E-07 575.7743549899673 52.313 0.3877 52.313 52.079 52.467 0 51 16 4 0 0 0 0.16226 2 28891 28891;28992 26.884 12.324 1 11877000 81759 7248 54767 55907 95112;95113 95112 -0.03454571001839213 YYQTDLVNI 9 Unmodified _YYQTDLVNI_ 0 0 0 ENSG00000137478|ENST00000409418|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;nc|ENSG00000137478|O94868-3|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 ENSG00000137478|ENST00000409418|FCHSD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 564.7852172851562 2 564.782222 1127.54989 0.21302 0.00012031 1.3776 0.00077802 1.5906 0.00089833 564.7838050227355 65.014 0.17424 65.014 64.919 65.093 0 15 8 2 0 0 0 0.15882 1 36259 36259 36.127 25.013 1 1216800 81760 4936 54768 55908 95114 95114 -0.008782844847928573 YYQVFFLF 8 Unmodified _YYQVFFLF_ 0 0 0 ENST00000607647.5_1_7:135282676-135283553:+|nuORF ENST00000607647.5_1_7:135282676-135283553:+|nuORF ENST00000607647.5_1_7:135282676-135283553:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 563.7828369140625 2 563.784036 1125.55352 0.57584 0.00032465 -2.6445 -0.001491 -2.0687 -0.0011663 563.7818691417309 99.699 0.2057 93.523 93.432 93.638 -6.1757 20 13 2 0 0 0 0.65867 1 66475 66475 20.871 0 1 39302000 81761 15864 54769 55909 95115 95115 -0.004235699203036347 YYRAIQFYL 9 Unmodified _YYRAIQFYL_ 0 0 0 CLTC-VMP1|6|fusion;CLTC-VMP1|7|fusion;CLTC-VMP1|9|fusion;CLTC-VMP1|19|fusion;CLTC-VMP1|12|fusion;ENSG00000141367|ENST00000269122|CLTC;nc|ENSG00000141367|Q00610-2|CLTC CLTC-VMP1|6|fusion;ENSG00000141367|ENST00000269122|CLTC ENSG00000141367|ENST00000269122|CLTC MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 618.8252563476562 2 618.824224 1235.63389 0.45682 0.00028269 1.0211 0.00063187 1.4779 0.00091456 618.8249460697871 73.345 0.27294 73.389 73.272 73.545 0.043983 22 11 2 0 0 0 0.13231 1 40423 40423 39.957 23.015 1 1952200 81762 5318;130 54770 55910 95116 95116 0.025502914027583756 YYRAPELIF 9 Unmodified _YYRAPELIF_ 0 0 0 ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A ENSG00000082701|ENST00000264235|GSK3B;ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 586.3114013671875 2 586.310949 1170.60735 1.0432 0.00061163 1.2931 0.00075817 2.3363 0.0013698 586.310718497171 70.523 0.40868 70.558 70.401 70.81 0.035507 42 18 3 0 0 0 0.39143 1 38787 38787 13.042 0.51092 1 3127200 81763 1351;2359 54771 55911 95117 95117 0.02886602511421188 YYRAPELIF 9 Unmodified _YYRAPELIF_ 0 0 0 ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B;ENSG00000105723|ENST00000222330|GSK3A ENSG00000082701|ENST00000264235|GSK3B;ENSG00000105723|ENST00000222330|GSK3A ENSG00000105723|ENST00000222330|GSK3A MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.81396484375 2 586.310949 1170.60735 1.1626 0.00068165 -0.61293 -0.00035937 0.54967 0.00032228 586.3104308587689 86.493 0.52548 80.317 80.136 80.661 -6.1757 44 27 2 0 0 0 0.026499 2 57114 56973;57114 62.573 34.086 1 12540000 81764 1351;2359 54771 55911 95118;95119 95119 0.02886602511421188 YYRCRDWRPRD 11 Unmodified _YYRCRDWRPRD_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 793.3768310546875 2 793.375683 1584.73681 NaN NaN NaN NaN NaN NaN NaN 88.598 1 88.598 88.098 89.098 0 0 0 0 0.9434 1 49036 49036 0.26902 0.26902 1 + 81765 18501 54772 55912 95120 95120 -0.03216571148254843 YYRCRDWRPRD 11 Unmodified _YYRCRDWRPRD_ 0 0 0 REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 793.3768310546875 2 793.375683 1584.73681 -0.0059701 -4.7365E-06 -0.89971 -0.00071381 -0.90568 -0.00071854 793.3750284959501 88.575 0.091286 88.575 88.53 88.621 0 5 4 2 0 0 0 0.306 1 49036 49036 0.26902 0.26902 1 293070 + 81766 18501 54772 55912 95121 95121 -0.03216571148254843 YYRDAEAYRH 10 Unmodified _YYRDAEAYRH_ 0 0 0 nc|ENSG00000102145|P15976-2|GATA1;ENSG00000102145|ENST00000376670|GATA1 nc|ENSG00000102145|P15976-2|GATA1 nc|ENSG00000102145|P15976-2|GATA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 672.3104248046875 2 672.31 1342.60545 NaN NaN NaN NaN NaN NaN NaN 94.617 1 94.617 94.117 95.117 0 0 0 0 1.0029 1 52302 52302 0.35063 0 1 81767 2022 54773 55913 95122 95122 -0.052150582444937754 YYRDDFYDR 9 Unmodified _YYRDDFYDR_ 0 0 0 ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY ENSG00000125970|ENST00000246194|RALY MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 656.7833251953125 2 656.783284 1311.55202 0.51948 0.00034118 -1.0083 -0.00066227 -0.48887 -0.00032108 656.7831432277844 86.298 0.33345 85.795 85.621 85.955 -0.50318 34 13 4 0 0 0 0.58466 1 47189 47189 2.3027 0 1 1225400 81768 3917 54774 55914 95123 95123 -0.09129855747005422 YYRDLESDL 9 Unmodified _YYRDLESDL_ 0 0 0 REV__ENST00000374723.5_1_9:108152705-108152840:+|nuORF REV__ENST00000374723.5_1_9:108152705-108152840:+|nuORF MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7674560546875 2 587.274761 1172.53497 -0.051768 -3.0402E-05 -0.97927 -0.0005751 -1.031 -0.0006055 587.2743285520511 52.373 0.15586 52.373 52.311 52.467 0 9 6 2 0 0 0 0.21473 1 28949 28949 4.3292 0 1 604240 + 81769 26189 54775 55915 95124 95124 -0.04439776352796798 YYRECNID 8 Unmodified _YYRECNID_ 0 0 0 REV__nc|ENSG00000142405|P59046-3|NLRP12 REV__nc|ENSG00000142405|P59046-3|NLRP12 MULTI-MSMS AL20221201_MKP_PDAC_01 4 1075.453369140625 1 1075.45132 1074.44404 1.4017 0.0015074 -1.3666 -0.0014697 0.035107 3.7756E-05 1075.4513940914276 107.61 0.46175 101.43 101.28 101.74 -6.1757 157 83 3 0 0 0 0.80722 1 72142 72142 2.3027 0 1 3786100 + 81770 20569 54776 55916 95125 95125 -0.09019943601924751 YYRGNYMTF 9 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ YYRGNYM(1)TF YYRGNYM(57)TF 0 0 1 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 615.7651977539062 2 615.766049 1229.51754 -0.31311 -0.0001928 -0.39494 -0.00024319 -0.70804 -0.00043599 615.7663229901208 36.505 0.27235 36.255 36.086 36.358 -0.2497 31 12 3 0 0 0 0.026094 1 19133 19133 57.471 43.565 1 5872300 81771 10302 54777 55917 95126 95126 1679 -0.0880339515945252 YYRGNYMTF 9 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ YYRGNYM(1)TF YYRGNYM(46)TF 0 0 1 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 615.766357421875 2 615.766049 1229.51754 0.077732 4.7865E-05 0.48508 0.00029869 0.56281 0.00034656 615.766369939301 36.137 0.2185 36.162 36.053 36.272 0.024971 22 9 3 0 0 0 0.047196 1 19151 19151 46.021 33.78 1 4497800 81772 10302 54777 55917 95127 95127 1679 -0.0880339515945252 YYRGNYMTF 9 Oxidation (M) _YYRGNYM(Oxidation (M))TF_ YYRGNYM(1)TF YYRGNYM(92)TF 0 0 1 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 615.766845703125 2 615.766049 1229.51754 0.6598 0.00040628 -0.2964 -0.00018251 0.3634 0.00022377 615.7664910599799 40.614 0.40508 36.084 35.918 36.323 -4.5294 55 24 3 0 0 0 0.0082661 1 24206 24206 92.491 70.954 1 22029000 81773 10302 54777 55917 95128 95128 1679 -0.0880339515945252 YYRGNYMTF 9 Unmodified _YYRGNYMTF_ 0 0 0 nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 nc|ENSG00000204574|Q8NE71-2|ABCF1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 607.7685546875 2 607.768591 1213.52263 0.48996 0.00029778 -1.2148 -0.00073829 -0.7248 -0.00044051 607.7674224676548 54.718 0.2129 48.853 48.746 48.959 -5.8653 20 12 2 0 0 0 0.021948 1 34730 34730 58.679 39.422 1 14561000 81774 10302 54777 55918 95129 95129 -0.0755909129684369 YYRHKVSEF 9 Unmodified _YYRHKVSEF_ 0 0 0 ENSG00000099995|ENST00000215793|SF3A1;nc|ENSG00000099995|Q15459-2|SF3A1;ENST00000463818.1_1_22:30742246-30752805:-|nuORF ENSG00000099995|ENST00000215793|SF3A1 ENSG00000099995|ENST00000215793|SF3A1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 410.2098693847656 3 410.208495 1227.60366 1.3018 0.00053399 0.55862 0.00022915 1.8604 0.00076314 410.20862134355764 20.577 0.22614 17.884 17.762 17.988 -2.693 20 13 2 0 0 0 0.34134 1 10955 10955 15.248 11.661 1 1725900 81775 1734 54778 55919 95130 95130 -0.001040672624412764 YYRKQLSYF 9 Unmodified _YYRKQLSYF_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.220458984375 3 423.220513 1266.63971 -0.080318 -3.3992E-05 -0.46635 -0.00019737 -0.54667 -0.00023136 423.22034204333687 37.644 0.23806 37.661 37.515 37.753 0.01704 25 11 3 0 0 0 0.10734 1 19986 19986 23.79 17.159 1 7227200 81776 2175 54779 55920 95131 95131 0.01705389914445732 YYRKQLSYF 9 Unmodified _YYRKQLSYF_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 634.3270874023438 2 634.327131 1266.63971 NaN NaN NaN NaN NaN NaN NaN 37.66 1 37.677 37.177 38.177 0.01704 0 0 0 0.26667 1 20002 20002 26.884 19.594 1 81777 2175 54779 55920 95132 95132 0.01705389914445732 YYRKQLSYF 9 Unmodified _YYRKQLSYF_ 0 0 0 nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 nc|ENSG00000104067|Q07157-2|TJP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 423.2208862304688 3 423.220513 1266.63971 1.7392 0.00073605 0.66043 0.00027951 2.3996 0.0010156 423.2204429816149 41.67 0.37069 37.063 36.879 37.25 -4.6079 55 23 3 0 0 0 0.05447 2 25014 25014;25166 33.445 14.301 1 14197000 81778 2175 54779 55920 95133;95134 95133 0.01705389914445732 YYRPRFFLL 9 Unmodified _YYRPRFFLL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 425.5731811523438 3 425.572998 1273.69716 0.14105 6.0028E-05 0.68502 0.00029153 0.82607 0.00035155 425.5731410792395 72.354 0.39699 72.396 72.174 72.571 0.041733 45 18 4 0 0 0 0.095405 2 39802 39802;39906 31.268 25.485 1 5488200 81779 4267 54780 55921 95135;95136 95135 0.07126276910662455 YYRPRFFLL 9 Unmodified _YYRPRFFLL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 638.351806640625 2 637.855858 1273.69716 -0.19232 -0.00012267 -4.2732 -0.0027257 -4.4656 -0.0028484 638.3540749162853 98.953 0.23421 92.778 92.66 92.894 -6.1757 26 15 2 0 0 0 0.000405 1 65751 65751 146.01 98.259 1 79143000 81780 4267 54780 55921 95137 95137 0.07126276910662455 YYRPRFFLL 9 Unmodified _YYRPRFFLL_ 0 0 0 nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;nc|ENSG00000130816|P26358-3|DNMT1;ENST00000586588.5_1_19:10244345-10254710:-|nuORF nc|ENSG00000130816|P26358|DNMT1 nc|ENSG00000130816|P26358|DNMT1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 425.5722351074219 3 425.572998 1273.69716 0.23229 9.8858E-05 0.47894 0.00020383 0.71124 0.00030268 425.57307296411705 98.96 0.17885 92.785 92.716 92.894 -6.1757 23 11 3 0 0 0 0.012148 1 65757 65757 66.457 53.584 1 77535000 81781 4267 54780 55921 95138 95138 0.07126276910662455 YYRTWHKI 8 Unmodified _YYRTWHKI_ 0 0 0 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 ENSG00000007545|ENST00000397412|CRAMP1 MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 584.2831420898438 2 583.808908 1165.60326 0.14168 8.2712E-05 -0.52971 -0.00030925 -0.38803 -0.00022654 583.8085493159751 86.109 0.17371 86.109 86.043 86.217 0 15 9 2 0 0 0 8.7369 1 47679 47679 2.3027 0 1 285280 81782 368 54781 55922 95139 95139 0.02708557808364276 YYSALRHYI 9 Unmodified _YYSALRHYI_ 0 0 0 ENSG00000122585|ENST00000242152|NPY ENSG00000122585|ENST00000242152|NPY ENSG00000122585|ENST00000242152|NPY MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 593.3033447265625 2 593.306198 1184.59784 NaN NaN NaN NaN NaN NaN NaN 76.783 1 76.833 76.333 77.333 0.05011 0 0 0 0.54015 1 42371 42371 14.582 0 1 81783 3648 54782 55923 95140 95140 0.012928342258874181 YYSAMNYDIC 10 Unmodified _YYSAMNYDIC_ 0 0 0 ENSG00000138944|ENST00000381176|SHISAL1 ENSG00000138944|ENST00000381176|SHISAL1 ENSG00000138944|ENST00000381176|SHISAL1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 621.7443237304688 2 621.743924 1241.4733 0.56061 0.00034856 -1.859 -0.0011558 -1.2984 -0.00080729 621.7435861770563 53.316 0.28045 53.316 53.12 53.401 0 35 11 4 0 0 0 0.68719 1 29511 29511 4.3292 0.38484 1 8995100 81784 5119 54783 55924 95141 95141 -0.1377816736794557 YYSATCNKF 9 Carbamidomethyl (C) _YYSATC(Carbamidomethyl (C))NKF_ YYSATC(1)NKF YYSATC(100)NKF 0 1 0 ENSG00000184916|ENST00000331782|JAG2;nc|ENSG00000184916|Q9Y219-2|JAG2 ENSG00000184916|ENST00000331782|JAG2 ENSG00000184916|ENST00000331782|JAG2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 577.2518920898438 2 577.252774 1152.491 1.2765 0.00073688 -1.5403 -0.00088915 -0.26378 -0.00015227 577.2517410805201 33.589 0.31754 29.604 29.525 29.842 -3.9853 31 17 2 0 0 0 0.0088174 2 19276 19276;19411 103.75 61.654 1 10515000 81785 9302 54784 55925 95142;95143 95142 866 -0.07915084050796395 YYSAVTPHL 9 Unmodified _YYSAVTPHL_ 0 0 0 ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000460706.5_1_1:97187363-97236440:+|nuORF;nc|ENSG00000117569|Q9UKA9-5|PTBP2;nc|ENSG00000117569|Q9UKA9-6|PTBP2;ENST00000476419.5_1_1:97187405-97272445:+|nuORF ENSG00000117569|ENST00000674951|PTBP2 ENSG00000117569|ENST00000674951|PTBP2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 525.7660522460938 2 525.766374 1049.5182 0.4867 0.00025589 -0.040762 -2.1431E-05 0.44594 0.00023446 525.7663256541355 46.585 0.17791 46.249 46.149 46.327 -0.33664 15 8 2 0 0 0 0.010877 1 24940 24940 77.984 45.679 1 3689200 81786 3317 54785 55926 95144 95144 -0.004582324480907118 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 414.8680114746094 3 414.86825 1241.58292 -0.38731 -0.00016068 -0.094347 -3.9142E-05 -0.48166 -0.00019982 414.8680923877391 35.353 0.25055 35.353 35.246 35.496 0 28 12 3 0 0 0 0.40046 1 18673 18673 14.838 10.962 1 15384000 81787 5401 54786 55927 95145 95145 -0.028206576420870988 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 414.8678588867188 3 414.86825 1241.58292 -0.40031 -0.00016608 -0.50935 -0.00021131 -0.90967 -0.00037739 414.8680372875293 35.559 0.36818 35.337 35.151 35.519 -0.2224 57 16 4 0 0 0 0.20195 2 18561 18561;18664 23.964 18.181 1 118680000 81788 5401 54786 55927 95146;95147 95146 -0.028206576420870988 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 621.7981567382812 2 621.798737 1241.58292 -0.41973 -0.00026099 -1.0045 -0.00062458 -1.4242 -0.00088557 621.7980262050979 35.577 0.24823 35.354 35.201 35.45 -0.2224 19 11 2 0 0 0 0.06987 1 18601 18601 53.404 32.989 1 8435600 81789 5401 54786 55927 95148 95148 -0.028206576420870988 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 414.8681640625 3 414.86825 1241.58292 -0.16818 -6.9771E-05 -0.044709 -1.8548E-05 -0.21289 -8.8319E-05 415.202499576593 35.272 0.27198 35.299 35.186 35.458 0.027401 28 12 3 0 0 0 0.20195 1 18620 18620 29.281 25.405 1 10395000 81790 5401 54786 55927 95149 95149 -0.028206576420870988 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 414.8681335449219 3 414.86825 1241.58292 1.0618 0.00044051 0.12793 5.3074E-05 1.1897 0.00049358 414.86826752068157 39.526 0.52802 35.075 34.766 35.294 -4.4509 124 32 5 0 0 0 0.038363 3 23307 23307;23430;23563 48.073 30.63 1 458330000 81791 5401 54786 55927 95150;95151;95152 95150 -0.028206576420870988 YYSHLEGARF 10 Unmodified _YYSHLEGARF_ 0 0 0 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 ENSG00000142207|ENST00000382751|URB1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 622.3012084960938 2 621.798737 1241.58292 0.6005 0.00037339 0.20677 0.00012857 0.80727 0.00050196 621.7988685938724 39.486 0.43829 35.035 34.811 35.25 -4.4509 80 26 4 0 0 0 1.5072E-15 2 23355 23355;23495 173.69 145.19 1 83648000 81792 5401 54786 55927 95153;95154 95153 -0.028206576420870988 YYSKIIISP 9 Unmodified _YYSKIIISP_ 0 0 0 nc|ENSG00000170017|Q13740-4|ALCAM;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM nc|ENSG00000170017|Q13740-4|ALCAM nc|ENSG00000170017|Q13740-4|ALCAM MULTI-SECPEP AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 1083.984741210938 1 1083.60847 1082.6012 1.4049 0.0015223 0.66204 0.00071739 2.0669 0.0022397 1084.6118148282135 91.463 0.1525 91.499 91.381 91.533 0.036507 6 5 2 0 0 0 0.20528 1 50821 50821 4.756 0.42677 1 3563700 81793 7940 54787 55928 95155 95155 0.06320084279923321 YYSKSVGFMQW 11 Oxidation (M) _YYSKSVGFM(Oxidation (M))QW_ YYSKSVGFM(1)QW YYSKSVGFM(50)QW 0 0 1 nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B nc|ENSG00000189057|Q6SJ93-2|FAM111B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 706.3214721679688 2 706.321188 1410.62782 0.41889 0.00029587 1.1453 0.00080895 1.5642 0.0011048 706.3218778991542 51.968 0.25335 51.909 51.751 52.005 -0.058918 30 11 3 0 0 0 0.056311 1 28117 28117 49.527 39.453 1 3182500 81794 9726 54788 55929 95156 95156 1567 -0.06106594891070927 YYSLIKMVF 9 Oxidation (M) _YYSLIKM(Oxidation (M))VF_ YYSLIKM(1)VF YYSLIKM(89)VF 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 590.3115844726562 2 590.309561 1178.60457 0.69166 0.00040829 -0.14818 -8.7472E-05 0.54347 0.00032082 590.3095861331125 71.635 0.50571 71.674 71.469 71.974 0.039024 83 23 5 0 0 0 0.0086722 2 39381 39381;39484 88.954 77.314 1 82461000 81795 8367 54789 55930 95157;95158 95157 1423 0.022410110622786306 YYSLIKMVF 9 Oxidation (M) _YYSLIKM(Oxidation (M))VF_ YYSLIKM(1)VF YYSLIKM(120)VF 0 0 1 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20221201_MKP_PDAC_01 4 590.30908203125 2 590.309561 1178.60457 0.77436 0.00045711 -0.43386 -0.00025611 0.34051 0.000201 590.3093897001236 90.428 0.55602 84.253 83.918 84.474 -6.1757 71 32 3 0 0 0 0.0047067 2 59793 59642;59793 118.07 106.94 1 21928000 81796 8367 54789 55930 95159;95160 95160 1423 0.022410110622786306 YYSLIKMVF 9 Unmodified _YYSLIKMVF_ 0 0 0 nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 nc|ENSG00000173821|Q63HN8|RNF213 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 582.3114013671875 2 582.312103 1162.60965 0.50622 0.00029478 0.3224 0.00018773 0.82862 0.00048251 582.3120515589471 87.906 0.18401 87.96 87.864 88.048 0.053352 13 7 2 0 0 0 0.0082475 1 48894 48894 92.653 72.2 1 17156000 81797 8367 54789 55931 95161 95161 0.034853149248874615 YYSPHGHIL 9 Unmodified _YYSPHGHIL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 362.8506469726562 3 362.85042 1085.52943 -0.84893 -0.00030803 1.2512 0.00045401 0.40231 0.00014598 362.85096215477057 32.115 0.24207 32.115 31.961 32.204 0 24 11 3 0 0 0 0.22317 1 16773 16773 25.399 22.404 1 2733300 81798 5657 54790 55932 95162 95162 -0.009914103539585994 YYSPHGHIL 9 Unmodified _YYSPHGHIL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 362.8505859375 3 362.85042 1085.52943 -0.028078 -1.0188E-05 0.88675 0.00032176 0.85867 0.00031157 362.85069172075276 32.033 0.32006 31.904 31.722 32.042 -0.12915 38 12 4 0 0 0 0.095049 1 16645 16645 30.637 23.913 1 14652000 81799 5657 54790 55932 95163 95163 -0.009914103539585994 YYSPHGHIL 9 Unmodified _YYSPHGHIL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 543.7711791992188 2 543.771991 1085.52943 NaN NaN NaN NaN NaN NaN NaN 32.097 1 31.967 31.467 32.467 -0.12915 0 0 0 0.3092 1 16704 16704 24.674 18.913 1 81800 5657 54790 55932 95164 95164 -0.009914103539585994 YYSPHGHIL 9 Unmodified _YYSPHGHIL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 362.8513488769531 3 362.85042 1085.52943 1.9253 0.00069859 0.82274 0.00029853 2.748 0.00099712 362.850490857143 36.049 0.46292 31.857 31.555 32.018 -4.1928 93 28 4 0 0 0 0.068777 2 20887 20887;21012 36.127 29.404 1 62702000 81801 5657 54790 55932 95165;95166 95165 -0.009914103539585994 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 433.9019165039062 3 433.567912 1297.68191 0.093801 4.0669E-05 -0.25421 -0.00011022 -0.16041 -6.955E-05 433.56775440977606 51.762 0.2646 51.329 51.21 51.474 -0.43367 35 13 3 0 0 0 0.28407 1 27901 27901 17.049 7.2843 1 19348000 81802 5657 54791 55933 95167 95167 0.04497365322799851 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 433.5680541992188 3 433.567912 1297.68191 -0.025707 -1.1146E-05 -0.062125 -2.6936E-05 -0.087832 -3.8081E-05 433.56781163897944 51.463 0.35145 51.409 51.226 51.578 -0.053871 63 17 5 0 0 0 0.37677 2 27918 27810;27918 13.519 6.4816 1 71084000 81803 5657 54791 55933 95168;95169 95169 0.04497365322799851 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.3499145507812 2 649.84823 1297.68191 0.071212 4.6277E-05 -0.29992 -0.0001949 -0.2287 -0.00014862 649.8483183814377 51.458 0.21238 51.404 51.306 51.519 -0.053871 25 10 3 0 0 0 0.025642 1 27832 27832 56.177 47.432 1 3995900 81804 5657 54791 55933 95170 95170 0.04497365322799851 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.9027709960938 3 433.567912 1297.68191 0.72624 0.00031487 -0.72406 -0.00031393 0.0021828 9.464E-07 433.56772107941947 56.631 0.39289 50.654 50.466 50.859 -5.9769 52 22 3 0 0 0 0.16973 2 36102 36102;36242 32.898 26.274 1 43908000 81805 5657 54791 55933 95171;95172 95171 0.04497365322799851 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 433.5680847167969 3 433.567912 1297.68191 0.81053 0.00035142 -0.098116 -4.254E-05 0.71241 0.00030888 433.5678596028364 80.555 0.75465 74.38 73.924 74.679 -6.1757 116 42 4 0 0 0 0.16973 4 52917 52668;52795;52917;53043 28.234 20.051 1 90745000 81806 5657 54791 55933 95173;95174;95175;95176 95175 0.04497365322799851 YYSPHGHILVL 11 Unmodified _YYSPHGHILVL_ 0 0 0 nc|ENSG00000144895|Q9BY44-4|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A nc|ENSG00000144895|Q9BY44-4|EIF2A MULTI-MSMS AL20221201_MKP_PDAC_01 4 649.8475952148438 2 649.84823 1297.68191 0.6187 0.00040206 -0.85107 -0.00055306 -0.23236 -0.000151 649.8477508622311 80.584 0.39813 74.408 74.168 74.566 -6.1757 34 21 3 0 0 0 2.9767E-06 2 52802 52802;52944 99.799 81.426 1 20253000 81807 5657 54791 55933 95177;95178 95177 0.04497365322799851 YYSPSCREF 9 Carbamidomethyl (C) _YYSPSC(Carbamidomethyl (C))REF_ YYSPSC(1)REF YYSPSC(76)REF 0 1 0 ENSG00000100564|ENST00000216452|PIGH ENSG00000100564|ENST00000216452|PIGH ENSG00000100564|ENST00000216452|PIGH MULTI-MSMS AL20221201_MKP_PDAC_01 4 604.7550659179688 2 604.755681 1207.49681 -0.0064169 -3.8807E-06 0.61487 0.00037185 0.60846 0.00036797 604.7561753442941 39.76 0.2456 35.274 35.122 35.368 -4.4851 30 15 2 0 0 0 0.011671 1 23600 23600 75.761 54.014 1 9387200 81808 1843 54792 55934 95179 95179 177 -0.09863985539118403 YYSPTKNEI 9 Unmodified _YYSPTKNEI_ 0 0 0 nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1;nc|ENSG00000117298|P42892-2|ECE1 nc|ENSG00000117298|P42892-3|ECE1 nc|ENSG00000117298|P42892-3|ECE1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 557.7744140625 2 557.774396 1113.53424 0.32622 0.00018196 -0.12315 -6.8687E-05 0.20308 0.00011327 557.7742296256134 31.178 0.22552 31.178 31.051 31.276 0 17 10 2 0 0 0 0.06294 1 16226 16226 41.84 17.819 1 1758800 81809 3293 54793 55935 95180 95180 -0.017985710018592727 YYSQSWRF 8 Unmodified _YYSQSWRF_ 0 0 0 REV__nc|ENSG00000189056|P78509-3|RELN REV__nc|ENSG00000189056|P78509-3|RELN MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 380.191650390625 3 379.510174 1135.50869 0.56339 0.00021381 2.2323 0.00084719 2.7957 0.001061 379.5110549249582 28.246 0.27533 28.2 28.013 28.288 -0.046408 16 10 2 0 0 0 0.80558 1 14535 14535 3.2813 0.28607 1 5978800 + 81810 23757 54794 55936 95181 95181 -0.053640007336070994 YYSSESHKDY 10 Unmodified _YYSSESHKDY_ 0 0 0 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 639.767333984375 2 639.7673 1277.52005 NaN NaN NaN NaN NaN NaN NaN 16.382 1 16.383 15.883 16.883 0.0010548 0 0 0 1.0061 1 8076 8076 0 0 1 81811 8133 54795 55937 95182 95182 -0.10761268220790043 YYSVEELSF 9 Unmodified _YYSVEELSF_ 0 0 0 REV__nc|ENSG00000171365|P51795-1|CLCN5;REV__nc|ENSG00000109572|P51790-5|CLCN3 REV__nc|ENSG00000171365|P51795-1|CLCN5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 379.5102233886719 3 379.509729 1135.50736 NaN NaN NaN NaN NaN NaN NaN 27.905 1 27.905 27.405 28.405 0 0 0 0 0.84021 1 14392 14392 2.7352 0 1 + 81812 22555;18663 54796 55938 95183 95183 -0.05497679613040418 YYSWEKAF 8 Unmodified _YYSWEKAF_ 0 0 0 nc|ENSG00000147121|Q5JUW0-2|KRBOX4;ENSG00000147121|ENST00000344302|KRBOX4 nc|ENSG00000147121|Q5JUW0-2|KRBOX4 nc|ENSG00000147121|Q5JUW0-2|KRBOX4 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 365.1713256835938 3 365.171159 1092.49165 NaN NaN NaN NaN NaN NaN NaN 18.751 1 18.751 18.251 19.251 0 0 0 0 0.97444 1 9344 9344 1.6526 0.87609 1 81813 5822 54797 55939 95184 95184 -0.05089921339435932 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(100)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7673950195312 2 586.768257 1171.52196 -0.42234 -0.00024782 0.33864 0.00019871 -0.083699 -4.9112E-05 586.7685110651545 44.81 0.282 44.81 44.677 44.959 0 31 14 3 0 0 0 0.0088975 1 24378 24378 104.8 47.328 1 60301000 81814 9843 54798 55940 95185 95185 1582 -0.056939307365382774 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(97)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 586.7684936523438 2 586.768257 1171.52196 -0.24016 -0.00014092 -0.40527 -0.0002378 -0.64543 -0.00037872 586.7684272159777 45.193 0.30859 45.193 45.016 45.324 0 52 15 5 0 0 0 0.0083087 1 24593 24593 97.075 54.98 1 59570000 81815 9843 54798 55940 95186 95186 1582 -0.056939307365382774 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(100)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7689819335938 2 586.768257 1171.52196 -0.065532 -3.8452E-05 -0.57449 -0.00033709 -0.64002 -0.00037554 586.768202801203 45.476 0.24977 45.151 45.022 45.271 -0.32425 35 14 4 0 0 0 0.0088975 1 24257 24257 104.8 56.453 1 35228000 81816 9843 54798 55940 95187 95187 1582 -0.056939307365382774 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(130)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 586.7672729492188 2 586.768257 1171.52196 NaN NaN NaN NaN NaN NaN NaN 45.056 1 44.732 44.232 45.232 -0.32425 0 0 0 0.0013285 1 24051 24051 131.3 73.826 1 81817 9843 54798 55940 95188 95188 1582 -0.056939307365382774 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(93)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7688598632812 2 586.768257 1171.52196 0.85421 0.00050123 -1.5438 -0.00090585 -0.68959 -0.00040463 586.7683156091981 51.261 0.43573 45.612 45.397 45.833 -5.649 77 26 4 0 0 0 0.0082281 3 32220 32208;32220;32352 104.8 50.026 1 78928000 81818 9843 54798 55940 95189;95190;95191 95190 1582 -0.056939307365382774 YYTDIMHTL 9 Oxidation (M) _YYTDIM(Oxidation (M))HTL_ YYTDIM(1)HTL YYTDIM(110)HTL 0 0 1 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 586.7674560546875 2 586.768257 1171.52196 0.5175 0.00030365 -0.21368 -0.00012538 0.30383 0.00017828 586.7681142707065 51.661 0.33448 46.012 45.833 46.168 -5.649 46 20 3 0 0 0 0.0067112 2 32486 32486;32616 112.59 62.705 1 79823000 81819 9843 54798 55940 95192;95193 95192 1582 -0.056939307365382774 YYTDIMHTL 9 Unmodified _YYTDIMHTL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 578.7703857421875 2 578.7708 1155.52705 0.61387 0.00035529 -0.90196 -0.00052203 -0.28809 -0.00016674 578.7703870933499 62.726 0.30254 62.24 62.063 62.365 -0.48617 39 14 4 0 0 0 0.011671 2 34145 34145;34251 97.075 62.972 1 27780000 81820 9843 54798 55941 95194;95195 95194 -0.044496268739294464 YYTDIMHTL 9 Unmodified _YYTDIMHTL_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 578.7718505859375 2 578.7708 1155.52705 0.9926 0.00057449 -0.16746 -9.692E-05 0.82514 0.00047757 578.7709559953382 68.868 1.0746 62.693 62.32 63.394 -6.1757 150 59 4 0 0 0 0.011671 4 44873 44873;44994;45117;45253 97.075 54.98 1 163900000 81821 9843 54798 55941 95196;95197;95198;95199 95196 -0.044496268739294464 YYTDIMHTLF 10 Unmodified _YYTDIMHTLF_ 0 0 0 ENSG00000196576|ENST00000359337|PLXNB2;PLXNB2|p.T1522Gfs*154|1|0.24|ENSG00000196576|chr22:50278679-50278680|-/GGAGCCC|frameshift_variant;ENST00000479701.5_1_22:50714135-50720918:-|nuORF ENSG00000196576|ENST00000359337|PLXNB2 ENSG00000196576|ENST00000359337|PLXNB2 MULTI-MSMS AL20221201_MKP_PDAC_01 4 652.3052368164062 2 652.305007 1302.59546 0.53978 0.0003521 0.32376 0.00021119 0.86353 0.00056329 652.3048940868922 98.64 0.080391 92.464 92.427 92.508 -6.1757 8 5 2 0 0 0 0.02987 1 65473 65473 68.081 38.999 1 23245000 81822 9843 54799 55942 95200 95200 -0.0437338229407942 YYTEFPTVL 9 Unmodified _YYTEFPTVL_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 566.7821655273438 2 566.78169 1131.54883 0.31205 0.00017687 0.40448 0.00022925 0.71653 0.00040612 566.7821088023118 82.647 0.20789 82.647 82.56 82.768 0 15 8 2 0 0 0 0.52844 1 45860 45860 9.3474 0.75416 1 467300 81823 4087;13617 54800 55943 95201 95201 -0.011684988537126628 YYTEFPTVL 9 Unmodified _YYTEFPTVL_ 0 0 0 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;nc|ENSG00000128708|O14929-2|HAT1;ENSG00000128708|ENST00000264108|HAT1 ENST00000457761.6_1_2:172821936-172844354:+|nuORF;ENSG00000128708|ENST00000264108|HAT1 ENSG00000128708|ENST00000264108|HAT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7792358398438 2 566.78169 1131.54883 0.68731 0.00038955 -0.18381 -0.00010418 0.5035 0.00028537 566.7815884396703 83.206 0.35725 82.709 82.533 82.89 -0.49751 24 13 2 0 0 0 0.07087 3 45493 45467;45493;45587 53.576 24.494 1 6262000 81824 4087;13617 54800 55943 95202;95203;95204 95203 -0.011684988537126628 YYTFHFLYF 9 Unmodified _YYTFHFLYF_ 0 0 0 ENSG00000110429|ENST00000265651|FBXO3;nc|ENSG00000110429|Q9UK99-3|FBXO3;nc|ENSG00000110429|Q9UK99-2|FBXO3;ENST00000527772.1_1_11:33767599-33770353:-|nuORF ENSG00000110429|ENST00000265651|FBXO3 ENSG00000110429|ENST00000265651|FBXO3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 650.8078002929688 2 650.8055 1299.59645 3.576 0.0023273 3.2831 0.0021367 6.8591 0.0044639 650.8073640101607 97.792 0.27616 97.774 97.651 97.927 -0.018188 31 9 4 0 0 0 0.028475 1 54330 54330 74.396 52.65 1 6624200 81825 2720 54801 55944 95205 95205 -0.04136799862862972 YYTFHSQSLY 10 Unmodified _YYTFHSQSLY_ 0 0 0 ENSG00000189050|ENST00000305783|RNFT1;ENST00000586083.5_1_17:58037427-58042045:-|nuORF ENSG00000189050|ENST00000305783|RNFT1 ENSG00000189050|ENST00000305783|RNFT1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 436.8674011230469 3 436.868027 1307.58225 0.20633 9.0138E-05 -0.39583 -0.00017293 -0.18951 -8.2789E-05 436.86759221076824 54.156 0.27483 53.689 53.547 53.822 -0.46664 41 13 4 0 0 0 0.66569 1 29311 29311 3.5871 0 1 14006000 81826 9725 54802 55945 95206 95206 -0.059234970818124566 YYTGAADHIKR 11 Unmodified _YYTGAADHIKR_ 0 0 0 REV__ENST00000506165.1_1_5:139943324-139943944:-|nuORF REV__ENST00000506165.1_1_5:139943324-139943944:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 647.83056640625 2 647.830569 1293.64658 NaN NaN NaN NaN NaN NaN NaN 96.939 1 96.939 96.439 97.439 0 0 0 0 0.9435 1 53567 53567 0 0 1 + 81827 18853 54803 55946 95207 95207 0.011507027949619442 YYTKLEQKL 9 Unmodified _YYTKLEQKL_ 0 0 0 nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;nc|ENSG00000137216|Q5T3F8-2|TMEM63B;ENST00000534326.5_1_6:44102273-44116742:+|nuORF nc|ENSG00000137216|Q5T3F8-3|TMEM63B nc|ENSG00000137216|Q5T3F8-3|TMEM63B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 395.8878479003906 3 395.888651 1184.64412 -0.89665 -0.00035497 -0.43102 -0.00017064 -1.3277 -0.00052561 395.88816572075507 32.934 0.19753 32.934 32.831 33.029 0 14 9 2 0 0 0 0.54213 1 17250 17250 4.897 1.9018 1 939290 81828 4913 54804 55947 95208 95208 0.059188543373238645 YYTLWRQLH 9 Unmodified _YYTLWRQLH_ 0 0 0 REV__ENSG00000166507|ENST00000309979|NDST2 REV__ENSG00000166507|ENST00000309979|NDST2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 640.3301391601562 2 640.332747 1278.65094 NaN NaN NaN NaN NaN NaN NaN 74.035 1 74.035 73.535 74.535 0 0 0 0 0.82739 1 41205 41205 4.3292 1.8308 1 + 81829 22128 54805 55948 95209 95209 0.02276212008564471 YYTMMMNLY 9 Unmodified _YYTMMMNLY_ 0 0 0 ENSG00000162814|ENST00000366933|SPATA17 ENSG00000162814|ENST00000366933|SPATA17 ENSG00000162814|ENST00000366933|SPATA17 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 615.25537109375 2 615.255613 1228.49667 -0.33536 -0.00020633 1.2057 0.00074183 0.87037 0.0005355 615.2560991463944 34.142 0.32056 34.142 33.926 34.247 0 25 16 2 0 0 0 0.27545 1 17930 17930 13.906 0 1 9586800 81830 6917 54806 55949 95210 95210 -0.10843444854958761 YYTNTHTDY 9 Unmodified _YYTNTHTDY_ 0 0 0 REV__nc|ENSG00000064651|P55011-3|SLC12A2 REV__nc|ENSG00000064651|P55011-3|SLC12A2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 589.2438354492188 2 589.24346 1176.47237 -0.29535 -0.00017404 -0.022245 -1.3108E-05 -0.3176 -0.00018714 589.2428923884669 23.231 0.20055 23.231 23.087 23.287 0 17 9 2 0 0 0 0.49272 1 11812 11812 7.9102 0 1 335140 + 81831 17358 54807 55950 95211 95211 -0.10880922420983552 YYTPITPHL 9 Unmodified _YYTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 552.7903442382812 2 552.78985 1103.56515 0.71172 0.00039343 0.19108 0.00010563 0.9028 0.00049906 552.7898899621067 57.081 0.29896 57.081 56.922 57.221 0 31 12 4 0 0 0 0.014417 1 31736 31736 77.984 56.238 1 3748400 81832 3421 54808 55951 95212 95212 0.01750627103047009 YYTPITPHL 9 Unmodified _YYTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.7899780273438 2 552.78985 1103.56515 0.56392 0.00031173 -0.53435 -0.00029538 0.029568 1.6345E-05 552.7895826188404 57.608 0.63285 57.118 56.88 57.513 -0.48974 83 30 4 0 0 0 0.013041 2 31242 31242;31343 81.864 59.075 1 122090000 81833 3421 54808 55951 95213;95214 95213 0.01750627103047009 YYTPITPHL 9 Unmodified _YYTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 552.7903442382812 2 552.78985 1103.56515 0.82059 0.00045361 1.5676 0.00086653 2.3882 0.0013201 552.7910899666085 57.257 0.53569 57.191 56.998 57.533 -0.066036 58 26 3 0 0 0 0.010611 2 31111 31111;31210 89.427 62.543 1 30491000 81834 3421 54808 55951 95215;95216 95215 0.01750627103047009 YYTPITPHL 9 Unmodified _YYTPITPHL_ 0 0 0 nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3;nc|ENSG00000119314|O95758-7|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 nc|ENSG00000119314|O95758-1|PTBP3 MULTI-MSMS AL20221201_MKP_PDAC_01 4 552.7903442382812 2 552.78985 1103.56515 0.88219 0.00048767 0.70288 0.00038855 1.5851 0.00087621 552.7900202387783 63.378 0.7977 57.202 56.836 57.634 -6.1757 141 44 4 0 0 0 0.010611 4 40965 40830;40965;41105;41248 89.427 68.973 1 434400000 81835 3421 54808 55951 95217;95218;95219;95220 95218 0.01750627103047009 YYTQKLHLL 9 Unmodified _YYTQKLHLL_ 0 0 0 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 ENSG00000164626|ENST00000359534|KCNK5 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 393.5572509765625 3 393.557125 1177.64954 0.57986 0.00022821 0.25859 0.00010177 0.83845 0.00032998 393.5569703361131 47.461 0.3629 47.423 47.177 47.54 -0.038643 46 16 4 0 0 0 0.042911 1 25536 25536 36.506 22.101 1 9907700 81836 7217 54809 55952 95221 95221 0.06782577919807409 YYTRLGNDF 9 Unmodified _YYTRLGNDF_ 0 0 0 ENSG00000182774|ENST00000647841|RPS17;ENST00000559273.1_1_15:83208730-83209179:-|nuORF;ENST00000560639.1_1_15:83207600-83209179:-|nuORF ENSG00000182774|ENST00000647841|RPS17 ENSG00000182774|ENST00000647841|RPS17 MSMS AL20221201_MKP_PDAC_01 4 574.7732543945312 2 574.772188 1147.52982 NaN NaN NaN NaN NaN NaN NaN 49.469 1 44.073 43.573 44.573 -5.3961 0 0 0 0.01832 1 30911 30911 80.676 32.33 1 81837 9086 54810 55953 95222 95222 -0.03804035424786889 YYTSRPALF 9 Unmodified _YYTSRPALF_ 0 0 0 nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT nc|ENSG00000103502|O14735-3|CDIPT nc|ENSG00000103502|O14735-3|CDIPT MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 559.2868041992188 2 559.287474 1116.5604 0.28324 0.00015841 0.44641 0.00024967 0.72965 0.00040809 559.2874345897809 51.557 0.23576 51.503 51.421 51.657 -0.053871 19 11 2 0 0 0 0.012668 1 27908 27908 72.968 29.11 1 2827400 81838 2148 54811 55954 95223 95223 0.0067774296028346726 YYTSRPALF 9 Unmodified _YYTSRPALF_ 0 0 0 nc|ENSG00000103502|O14735-3|CDIPT;ENSG00000103502|ENST00000219789|CDIPT nc|ENSG00000103502|O14735-3|CDIPT nc|ENSG00000103502|O14735-3|CDIPT MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 2 559.287474 1116.5604 0.50734 0.00028375 1.3776 0.00077046 1.8849 0.0010542 559.2876778433834 51.937 0.075886 51.503 51.474 51.55 -0.43367 -2.4813E-06 0.00060711 NaN 72.968 5 3 2 NaN NaN NaN NaN 0 NaN NaN 0 1141100 81839 2148 54811 55954 0.0067774296028346726 YYTTERDEQ 9 Unmodified _YYTTERDEQ_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 603.259033203125 2 602.759475 1203.5044 -0.62143 -0.00037457 1.2248 0.00073826 0.60337 0.00036369 602.7598327658308 19.816 0.15165 19.816 19.754 19.905 0 15 11 2 0 0 0 0.50598 1 9926 9926 3.5965 1.7523 1 479210 81840 6083 54812 55955 95224 95224 -0.08921554737844417 YYTTERDEQ 9 Unmodified _YYTTERDEQ_ 0 0 0 nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 nc|ENSG00000150995|Q14643-3|ITPR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 602.7589111328125 2 602.759475 1203.5044 NaN NaN NaN NaN NaN NaN NaN 19.794 1 19.822 19.322 20.322 0.028357 0 0 0 0.77016 1 10000 10000 3.5965 1.7523 1 81841 6083 54812 55955 95225 95225 -0.08921554737844417 YYTTPIYRF 9 Unmodified _YYTTPIYRF_ 0 0 0 ENSG00000104957|ENST00000221554|YJU2B ENSG00000104957|ENST00000221554|YJU2B ENSG00000104957|ENST00000221554|YJU2B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 612.3082275390625 2 612.308406 1222.60226 0.5365 0.0003285 -1.1433 -0.00070005 -0.6068 -0.00037155 612.3081141753516 59.617 0.19571 59.564 59.479 59.675 -0.053062 15 9 2 0 0 0 0.020973 1 32515 32515 62.573 38.552 1 3838200 81842 2263 54813 55956 95226 95226 -0.00013701351213057933 YYTTPIYRF 9 Unmodified _YYTTPIYRF_ 0 0 0 ENSG00000104957|ENST00000221554|YJU2B ENSG00000104957|ENST00000221554|YJU2B ENSG00000104957|ENST00000221554|YJU2B MULTI-MSMS AL20221201_MKP_PDAC_01 4 612.812744140625 2 612.308406 1222.60226 0.58335 0.00035719 2.5271 0.0015474 3.1105 0.0019046 612.8116724307124 65.129 0.28491 58.953 58.847 59.132 -6.1757 23 15 3 0 0 0 0.15471 1 42180 42180 27.629 3.6082 1 9315400 81843 2263 54813 55956 95227 95227 -0.00013701351213057933 YYTVHLLQL 9 Unmodified _YYTVHLLQL_ 0 0 0 nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000175354|ENST00000309660|PTPN2 nc|ENSG00000175354|P17706-3|PTPN2 nc|ENSG00000175354|P17706-3|PTPN2 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 575.3226318359375 2 575.318774 1148.623 NaN NaN NaN NaN NaN NaN NaN 75.104 1 75.15 74.65 75.65 0.045959 0 0 0 0.08978 1 41412 41412 46.021 26.764 1 81844 8514 54814 55957 95228 95228 0.054628890284675435 YYVCIPTIML 10 Unmodified _YYVCIPTIML_ 0 0 0 REV__nc|ENSG00000102445|Q9H714-4|RUBCNL REV__nc|ENSG00000102445|Q9H714-4|RUBCNL MSMS AL20221201_MKP_PDAC_01 4 608.3128662109375 2 608.311246 1214.60794 NaN NaN NaN NaN NaN NaN NaN 86.807 1 80.631 80.131 81.131 -6.1757 0 0 0 0.31792 1 57228 57228 36.044 3.2585 1 + 81845 29541 54815 55958 95229 95229 0.009219378446005067 YYVDFFKTL 9 Unmodified _YYVDFFKTL_ 0 0 0 nc|ENSG00000132406|Q5BJH2-2|TMEM128;ENSG00000132406|ENST00000382753|TMEM128 nc|ENSG00000132406|Q5BJH2-2|TMEM128 nc|ENSG00000132406|Q5BJH2-2|TMEM128 MULTI-MSMS AL20221201_MKP_PDAC_01 4 598.3071899414062 2 598.305332 1194.59611 0.67415 0.00040334 0.60643 0.00036283 1.2806 0.00076617 598.3057339505785 97.986 0.18981 91.81 91.701 91.891 -6.1757 24 11 3 0 0 0 0.010301 1 64932 64932 79.596 53.328 1 42216000 81846 4403 54816 55959 95230 95230 0.006597804172997712 YYVFKVVHL 9 Unmodified _YYVFKVVHL_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 389.889892578125 3 389.890215 1166.64882 0.19858 7.7425E-05 -0.27907 -0.00010881 -0.080484 -3.138E-05 389.8900656388504 62.252 0.26705 62.22 62.063 62.33 -0.032787 30 13 3 0 0 0 0.10247 1 33980 33980 32.786 27.889 1 19627000 81847 9910 54817 55960 95231 95231 0.07215783270748943 YYVFKVVHL 9 Unmodified _YYVFKVVHL_ 0 0 0 ENSG00000197121|ENST00000354764|PGAP1;nc|ENSG00000197121|Q75T13-2|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 ENSG00000197121|ENST00000354764|PGAP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 389.8913269042969 3 389.890215 1166.64882 1.459 0.00056886 0.2263 8.8232E-05 1.6853 0.00065709 390.22474133226603 89.078 0.41683 82.902 82.569 82.986 -6.1757 41 23 3 0 0 0 0.10247 1 58732 58732 32.786 24.63 1 18640000 81848 9910 54817 55960 95232 95232 0.07215783270748943 YYVGHSQGTTI 11 Unmodified _YYVGHSQGTTI_ 0 0 0 nc|ENSG00000107798|P38571-2|LIPA;ENSG00000204021|ENST00000404190|LIPK;ENSG00000107798|ENST00000336233|LIPA nc|ENSG00000107798|P38571-2|LIPA nc|ENSG00000107798|P38571-2|LIPA MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 613.2957153320312 2 613.296027 1224.5775 NaN NaN NaN NaN NaN NaN NaN 101.92 1 101.87 101.37 102.37 -0.045853 0 0 0 0.94144 1 56616 56616 1.4819 0 1 81849 2519 54818 55961 95233 95233 -0.025803812245385416 YYVGQGPWTLA 11 Unmodified _YYVGQGPWTLA_ 0 0 0 REV__ENSG00000153790|ENST00000283905|C7orf31 REV__ENSG00000153790|ENST00000283905|C7orf31 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 627.8112182617188 2 627.811313 1253.60807 0.42894 0.00026929 -0.27314 -0.00017148 0.1558 9.781E-05 627.811383417571 62.737 0.25115 62.716 62.58 62.832 -0.021614 30 12 3 0 0 0 0.18636 1 34295 34295 32.786 11.039 1 5062900 + 81850 21184 54819 55962 95234 95234 -0.008586028395257017 YYVGSDGWAT 10 Unmodified _YYVGSDGWAT_ 0 0 0 REV__nc|ENSG00000105699|Q86X29-5|LSR REV__nc|ENSG00000105699|Q86X29-5|LSR MSMS AL20221201_MKP_PDAC_01 4 559.7417602539062 2 559.743096 1117.47164 NaN NaN NaN NaN NaN NaN NaN 95.661 1 89.485 88.985 89.985 -6.1757 0 0 0 0.83398 1 63368 63368 10.824 0.64053 1 + 81851 18450 54820 55963 95235 95235 -0.08239717070046026 YYVIGAVLL 9 Unmodified _YYVIGAVLL_ 0 0 0 REV__ENST00000370982.3_1_1:68168948-68169056:-|nuORF REV__ENST00000370982.3_1_1:68168948-68169056:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 505.79736328125 2 505.799686 1009.58482 NaN NaN NaN NaN NaN NaN NaN 77.068 1 77.068 76.568 77.568 0 0 0 0 0.70111 1 42846 42846 9.3474 2.9933 1 + 81852 26073 54821 55964 95236 95236 0.080410031138058 YYVLLYSR 8 Unmodified _YYVLLYSR_ 0 0 0 REV__ENST00000473417.5_1_3:125188296-125239016:-|nuORF REV__ENST00000473417.5_1_3:125188296-125239016:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 538.7924194335938 2 538.792392 1075.57023 NaN NaN NaN NaN NaN NaN NaN 67.696 1 67.214 66.714 67.714 -0.48218 0 0 0 0.9706 1 36988 36988 6.3541 0 1 + 81853 18919 54822 55965 95237 95237 0.035469309656718906 YYVPRGFWKQF 11 Unmodified _YYVPRGFWKQF_ 0 0 0 ENSG00000114374|ENST00000338981|USP9Y;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X ENSG00000114374|ENST00000338981|USP9Y;ENSG00000124486|ENST00000378308|USP9X ENSG00000114374|ENST00000338981|USP9Y MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 497.92626953125 3 497.590828 1489.75066 0.82367 0.00040985 0.97923 0.00048726 1.8029 0.00089711 497.9256280840091 64.626 0.1983 64.616 64.509 64.708 -0.010529 17 9 2 0 0 0 0.557 1 35410 35410 13.519 10.887 1 5529100 81854 3033;3790 54823 55966 95238 95238 0.025370296224991762 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5539245605469 3 378.553715 1132.63931 -0.22876 -8.6597E-05 0.47336 0.00017919 0.2446 9.2596E-05 378.5537930619092 53.478 0.35717 53.415 53.177 53.534 -0.063423 53 17 5 0 0 0 0.078314 2 28971 28971;29075 38.176 16.637 1 107540000 81855 734 54824 55967 95239;95240 95239 0.07830014985233902 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 567.3256225585938 2 567.326934 1132.63931 -0.024183 -1.3719E-05 -0.63047 -0.00035768 -0.65465 -0.0003714 567.3264864134093 53.499 0.39537 53.435 53.157 53.552 -0.063423 67 19 5 0 0 0 0.0087873 1 28982 28982 104.8 68.755 1 169560000 81856 734 54824 55967 95241 95241 0.07830014985233902 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 378.5540771484375 3 378.553715 1132.63931 -0.14485 -5.4834E-05 0.26754 0.00010128 0.12269 4.6446E-05 378.5536653609266 54.115 0.71953 54.048 53.661 54.38 -0.066936 67 36 3 0 0 0 0.40476 2 29356 29356;29455 12.241 3.2585 1 3907800 81857 734 54824 55967 95242;95243 95242 0.07830014985233902 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 378.5541076660156 3 378.553715 1132.63931 1.4804 0.00056041 0.044982 1.7028E-05 1.5254 0.00057744 378.5536630103046 83.684 0.959 77.508 77.005 77.964 -6.1757 158 50 4 0 0 0 0.15471 5 55010 54758;54884;55010;55136;55257 27.629 11.48 1 177400000 81858 734 54824 55967 95244;95245;95246;95247;95248 95246 0.07830014985233902 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 567.3276977539062 2 567.326934 1132.63931 1.1431 0.00064852 -0.02739 -1.5539E-05 1.1157 0.00063298 567.326876630046 83.691 0.9062 77.515 77.024 77.93 -6.1757 143 47 4 0 0 0 0.0030184 4 55137 54769;54895;55023;55137 117.6 81.555 1 83356000 81859 734 54824 55967 95249;95250;95251;95252 95252 0.07830014985233902 YYVRAVLHL 9 Unmodified _YYVRAVLHL_ 0 0 0 ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA ENST00000566534.5_1_16:88713161-88717421:-|nuORF ENST00000566534.5_1_16:88713161-88717421:-|nuORF MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 378.553715 1132.63931 0.41158 0.0001558 0.66812 0.00025292 1.0797 0.00040872 378.5537427898446 53.877 0.1398 53.41 53.306 53.446 -0.46664 -0.0022234 0.000198 NaN 38.176 11 6 3 NaN NaN NaN NaN 0 NaN NaN 0 1080800 81860 734 54824 55967 0.07830014985233902 YYVRAWVVF 9 Unmodified _YYVRAWVVF_ 0 0 0 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 ENSG00000116133|ENST00000371269|DHCR24 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 601.8213500976562 2 601.821484 1201.62842 NaN NaN NaN NaN NaN NaN NaN 94.945 1 94.945 94.445 95.445 0 0 0 0 0.8622 1 52485 52485 0 0 1 81861 3196 54825 55968 95253 95253 0.03566612610916309 YYVRILSTI 9 Unmodified _YYVRILSTI_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 564.3292846679688 2 564.326599 1126.63865 0.95177 0.00053711 0.94341 0.00053239 1.8952 0.0010695 564.3271260116018 68.635 0.38354 68.661 68.54 68.924 0.025146 50 17 4 0 0 0 0.0094097 1 37693 37693 82.529 44.555 1 36344000 81862 468 54826 55969 95254 95254 0.08039175545536636 YYVRILSTI 9 Unmodified _YYVRILSTI_ 0 0 0 nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF;ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF nc|ENSG00000013275|P43686-2|PSMC4 nc|ENSG00000013275|P43686-2|PSMC4 MULTI-MSMS AL20221201_MKP_PDAC_01 4 564.32763671875 2 564.326599 1126.63865 1.3038 0.00073579 -0.10403 -5.8709E-05 1.1998 0.00067708 564.326287838652 87.714 0.73827 81.538 81.112 81.85 -6.1757 89 40 3 0 0 0 0.0087873 3 57853 57728;57853;57977 103.35 67.226 1 28664000 81863 468 54826 55969 95255;95256;95257 95256 0.08039175545536636 YYVRKVLEL 9 Unmodified _YYVRKVLEL_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 394.9011840820312 3 394.900891 1181.68084 0.45478 0.00017959 0.51147 0.00020198 0.96625 0.00038157 394.9010809170632 47.581 0.14605 47.543 47.435 47.581 -0.038643 12 6 2 0 0 0 0.43515 1 25651 25651 10.8 2.3552 1 2840800 81864 9434 54827 55970 95258 95258 0.09727150953926866 YYVRKVLEL 9 Unmodified _YYVRKVLEL_ 0 0 0 nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 nc|ENSG00000185963|Q8TD16|BICD2 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 3 394.900891 1181.68084 0.61114 0.00024134 0.56873 0.00022459 1.1799 0.00046593 394.9008566120656 47.849 0.10667 47.496 47.409 47.516 -0.3526 -0.023317 5.8357E-05 NaN 10.8 6 4 2 NaN NaN NaN NaN 0 NaN NaN 0 1273700 81865 9434 54827 55970 0.09727150953926866 YYVSEIWSI 9 Unmodified _YYVSEIWSI_ 0 0 0 ENSG00000197992|ENST00000355819|CLEC9A ENSG00000197992|ENST00000355819|CLEC9A ENSG00000197992|ENST00000355819|CLEC9A MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 580.2875366210938 2 580.28714 1158.55973 0.38529 0.00022358 -0.12127 -7.0373E-05 0.26402 0.0001532 580.2867774914514 96.424 0.095451 96.12 96.078 96.173 -0.30472 11 6 2 0 0 0 0.58466 1 52665 52665 2.3027 0 1 297340 81866 10034 54828 55971 95259 95259 -0.01321096479409789 YYVSSAFTL 9 Unmodified _YYVSSAFTL_ 0 0 0 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 ENSG00000155096|ENST00000337198|AZIN1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 525.76123046875 2 525.760758 1049.50696 0.96231 0.00050595 -0.89905 -0.00047268 0.063265 3.3262E-05 525.7601576229638 83.224 0.34554 77.049 76.846 77.192 -6.1757 32 18 2 0 0 0 0.18465 1 54706 54706 24.674 7.7316 1 9469700 81867 6368 54829 55972 95260 95260 -0.015810545422255018 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 432.2316589355469 3 432.231189 1293.67174 0.19821 8.5675E-05 0.31461 0.00013598 0.51282 0.00022166 432.2312514899407 46.815 0.22334 46.815 46.678 46.901 0 28 10 4 0 0 0 0.060508 1 25589 25589 62.869 53.104 1 5848800 81868 3290;3289 54830 55973 95261 95261 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 432.2314147949219 3 432.231189 1293.67174 0.64425 0.00027847 -0.028846 -1.2468E-05 0.61541 0.000266 432.2311241292744 47.055 0.33122 46.719 46.544 46.876 -0.33664 56 16 5 0 0 0 0.012821 2 25161 25161;25264 79.427 62.378 1 98738000 81869 3290;3289 54830 55973 95262;95263 95262 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 647.8430786132812 2 647.843145 1293.67174 0.5519 0.00035754 -0.061645 -3.9937E-05 0.49025 0.00031761 647.8432403538474 47.045 0.23166 46.708 46.582 46.814 -0.33664 27 11 3 0 0 0 0.00013919 1 25193 25193 118.07 70.32 1 11146000 81870 3290;3289 54830 55973 95264 95264 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 432.2314758300781 3 432.231189 1293.67174 1.4529 0.00062799 -0.26527 -0.00011466 1.1876 0.00051333 432.2309365388176 46.778 0.28078 46.744 46.617 46.898 -0.033417 40 13 4 0 0 0 0.060508 1 25159 25159 55.249 37.385 1 18660000 81871 3290;3289 54830 55973 95265 95265 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 648.3447265625 2 647.843145 1293.67174 0.56079 0.0003633 -0.20009 -0.00012963 0.3607 0.00023368 647.8429569892398 52.302 0.30882 46.568 46.363 46.672 -5.7345 37 18 3 0 0 0 4.9436E-08 2 33057 32909;33057 145.13 97.381 1 69798000 81872 3290;3289 54830 55973 95266;95267 95267 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 432.2315368652344 3 432.231189 1293.67174 1.0761 0.00046511 -0.14559 -6.2928E-05 0.93048 0.00040218 432.2310384991718 60.314 0.17391 54.2 54.116 54.29 -6.1147 15 8 2 0 0 0 0.20195 1 38832 38832 23.964 19.848 1 11746000 81873 3290;3289 54830 55973 95268 95268 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MATCH AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 2 647.843145 1293.67174 1.5327 0.00099294 -0.18929 -0.00012263 1.3434 0.00087032 647.8429726032033 46.777 0.13831 46.744 46.675 46.814 -0.033417 0.070384 -8.2445E-05 NaN 145.13 10 6 2 NaN NaN NaN NaN 0 NaN NaN 0 2050200 81874 3290;3289 54830 55973 0.036647575975621294 YYVTELTHRI 10 Unmodified _YYVTELTHRI_ 0 0 0 ENSG00000117226|ENST00000370481|GBP3;nc|ENSG00000117226|Q9H0R5-4|GBP3;ENST00000370482.6_1_1:89479706-89486410:-|nuORF;ENSG00000117228|ENST00000370473|GBP1;ENST00000459831.1_1_1:89524386-89525013:-|nuORF ENSG00000117226|ENST00000370481|GBP3;ENSG00000117228|ENST00000370473|GBP1 ENSG00000117228|ENST00000370473|GBP1 MULTI-MATCH AL20221201_MKP_PDAC_01 4 3 432.231189 1293.67174 0.7615 0.00032914 -0.1927 -8.3293E-05 0.56879 0.00024585 432.2309564739613 52.291 0.43166 46.557 46.333 46.764 -5.7345 -0.15174 -0.00015119 NaN 79.427 64 25 3 NaN NaN NaN NaN 0 NaN NaN 0 115370000 81875 3290;3289 54830 55973 0.036647575975621294 YYVWLQHTL 9 Unmodified _YYVWLQHTL_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 611.816650390625 2 611.816399 1221.61824 0.56962 0.0003485 1.5542 0.00095086 2.1238 0.0012994 611.8174955208203 71.447 0.25447 70.969 70.791 71.045 -0.47735 16 10 2 0 0 0 0.29507 1 39099 39099 24.021 13.197 1 686830 81876 270 54831 55974 95269 95269 0.016300048857146976 YYVWLQHTL 9 Unmodified _YYVWLQHTL_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 611.8164672851562 2 611.816399 1221.61824 1.3239 0.00081001 -1.6751 -0.0010249 -0.35116 -0.00021484 611.8160219866436 70.834 0.68225 70.87 70.444 71.127 0.035507 107 31 5 0 0 0 0.015688 2 38991 38991;39108 85.272 57.643 1 75264000 81877 270 54831 55974 95270;95271 95270 0.016300048857146976 YYVWLQHTL 9 Unmodified _YYVWLQHTL_ 0 0 0 nc|ENSG00000003402|O15519-8|CFLAR;ENSG00000003402|ENST00000309955|CFLAR;nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR nc|ENSG00000003402|O15519-8|CFLAR nc|ENSG00000003402|O15519-8|CFLAR MULTI-MSMS AL20221201_MKP_PDAC_01 4 611.8173828125 2 611.816399 1221.61824 0.90016 0.00055073 0.37297 0.00022819 1.2731 0.00077892 611.816664054211 83.571 1.2863 77.395 76.624 77.91 -6.1757 175 68 3 0 0 0 0.0085366 6 54632 54500;54632;54765;54888;55015;55143 111.29 80.019 1 33381000 81878 270 54831 55974 95272;95273;95274;95275;95276;95277 95273 0.016300048857146976 YYWENHVAY 9 Unmodified _YYWENHVAY_ 0 0 0 REV__nc|ENSG00000115353|P25103-3|TACR1 REV__nc|ENSG00000115353|P25103-3|TACR1 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 622.7738647460938 2 622.772188 1243.52982 NaN NaN NaN NaN NaN NaN NaN 84.486 1 83.986 83.486 84.486 -0.49961 0 0 0 0.84369 1 46233 46233 2.3027 0.4585 1 + 81879 18973 54832 55975 95278 95278 -0.08220035424756134 YYWNAQRHP 9 Unmodified _YYWNAQRHP_ 0 0 0 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 ENSG00000064703|ENST00000369702|DDX20 MSMS AL20221201_MKP_PDAC_01 4 617.7911376953125 2 617.791247 1233.56794 NaN NaN NaN NaN NaN NaN NaN 2.3683 1 -0.11369 -0.61369 0.38631 -2.482 0 0 0 0.8622 1 1211 1211 0 0 1 81880 883 54833 55976 95279 95279 -0.03950104719456249 YYWTLPLD 8 Unmodified _YYWTLPLD_ 0 0 0 REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1 REV__nc|ENSG00000180488|Q8NAN2-2|MIGA1 MULTI-MSMS AL20221201_MKP_PDAC_01 4 535.7639770507812 2 535.7633 1069.51205 0.53713 0.00028777 1.5581 0.00083479 2.0953 0.0011226 535.7638019833424 46.01 0.58311 41.055 40.832 41.415 -4.9549 68 38 2 0 0 0 0.44122 1 28382 28382 40.449 0.49126 1 93330000 + 81881 23154 54834 55977 95280 95280 -0.019927506796193484 YYYDAFTL 8 Unmodified _YYYDAFTL_ 0 0 0 ENST00000368632.6_1_6:114281181-114292096:-|nuORF ENST00000368632.6_1_6:114281181-114292096:-|nuORF ENST00000368632.6_1_6:114281181-114292096:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 528.2409057617188 2 528.239658 1054.46476 NaN NaN NaN NaN NaN NaN NaN 73.203 1 73.203 72.703 73.703 0 0 0 0 0.97348 1 40751 40751 5.7604 0.52976 1 81882 12274 54835 55978 95281 95281 -0.06029029950605036 YYYELWWFWLV 11 Unmodified _YYYELWWFWLV_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 834.4009399414062 2 834.400295 1666.78604 NaN NaN NaN NaN NaN NaN NaN 42.618 1 42.618 42.118 43.118 0 0 0 0 0.9435 1 23083 23083 0 0 1 81883 7463 54836 55979 95282 95282 -0.02068352640367266 YYYELWWFWLV 11 Unmodified _YYYELWWFWLV_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 834.3998413085938 2 834.400295 1666.78604 NaN NaN NaN NaN NaN NaN NaN 64.8 1 64.8 64.3 65.3 0 0 0 0 0.9435 1 36143 36143 0 0 1 81884 7463 54836 55979 95283 95283 -0.02068352640367266 YYYELWWFWLV 11 Unmodified _YYYELWWFWLV_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MSMS AL20221201_MKP_PDAC_01 4 834.4019775390625 2 834.400295 1666.78604 NaN NaN NaN NaN NaN NaN NaN 56.96 1 50.983 50.483 51.483 -5.9769 0 0 0 0.94144 1 36392 36392 1.4819 1.4819 1 81885 7463 54836 55979 95284 95284 -0.02068352640367266 YYYELWWFWLV 11 Unmodified _YYYELWWFWLV_ 0 0 0 nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L nc|ENSG00000166272|Q9NX94|WBP1L MSMS AL20221201_MKP_PDAC_01 4 834.4010620117188 2 834.400295 1666.78604 NaN NaN NaN NaN NaN NaN NaN 61.502 1 55.347 54.847 55.847 -6.1543 0 0 0 0.94301 1 39617 39617 0.35063 0.043601 1 81886 7463 54836 55979 95285 95285 -0.02068352640367266 YYYETFEI 8 Unmodified _YYYETFEI_ 0 0 0 REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B REV__nc|ENSG00000111647|A0JNW5-2|BLTP3B MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 566.7532348632812 2 564.250223 1126.48589 0.68615 0.00038716 0.85165 0.00048055 1.5378 0.00086771 564.2511375978438 83.612 0.37836 83.115 82.89 83.268 -0.49751 71 15 7 0 0 0 0.80676 1 45775 45775 2.5775 0.27475 1 3361500 + 81887 18760 54837 55980 95286 95286 -0.07229064641751393 YYYGGQWFL 9 Unmodified _YYYGGQWFL_ 0 0 0 ENST00000455359.5_2_22:35653519-35659991:+|nuORF ENST00000455359.5_2_22:35653519-35659991:+|nuORF ENST00000455359.5_2_22:35653519-35659991:+|nuORF MULTI-MSMS AL20221201_MKP_PDAC_01 4 600.2716064453125 2 598.7742 1195.53385 0.26887 0.000161 -1.9823 -0.0011869 -1.7134 -0.0010259 598.7741613918707 49.782 0.45193 44.243 44.079 44.531 -5.5391 101 28 5 0 0 0 0.28047 1 31121 31121 18.135 1.0221 1 71482000 81888 13583 54838 55981 95287 95287 -0.05609945931041693 YYYIHTCIH 9 Unmodified _YYYIHTCIH_ 0 0 0 ENST00000355377.6_1_16:19278394-19278601:+|nuORF ENST00000355377.6_1_16:19278394-19278601:+|nuORF ENST00000355377.6_1_16:19278394-19278601:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1890563964844 3 404.855065 1211.54336 0.049163 1.9904E-05 -0.65902 -0.00026681 -0.60985 -0.0002469 404.85492730028227 37.962 0.20183 37.691 37.58 37.782 -0.27133 28 9 4 0 0 0 0.4887 1 19956 19956 8.1555 2.3721 1 7771400 81889 12074 54839 55982 95288 95288 -0.053945009171911806 YYYIHTCIH 9 Unmodified _YYYIHTCIH_ 0 0 0 ENST00000355377.6_1_16:19278394-19278601:+|nuORF ENST00000355377.6_1_16:19278394-19278601:+|nuORF ENST00000355377.6_1_16:19278394-19278601:+|nuORF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 405.1896057128906 3 404.855065 1211.54336 0.19185 7.7673E-05 -0.29676 -0.00012014 -0.1049 -4.2471E-05 404.85495046851497 43.144 0.20895 42.833 42.699 42.908 -0.31039 22 9 3 0 0 0 0.4887 1 22929 22929 8.1555 0.21013 1 8807800 81890 12074 54839 55982 95289 95289 -0.053945009171911806 YYYILTKKKKK 11 Unmodified _YYYILTKKKKK_ 0 0 0 REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF REV__ENST00000297857.3_1_8:124261964-124262105:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 738.4528198242188 2 738.452862 1474.89117 NaN NaN NaN NaN NaN NaN NaN 87.996 1 87.492 86.992 87.992 -0.50423 0 0 0 0.9435 1 48131 48131 0 0 1 + 81891 25284 54840 55983 95290 95290 0.17272188556034962 YYYQLFQVF 9 Unmodified _YYYQLFQVF_ 0 0 0 REV__ENSG00000189077|ENST00000493111|TMEM120A REV__ENSG00000189077|ENST00000493111|TMEM120A MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 635.8131713867188 2 635.810782 1269.60701 NaN NaN NaN NaN NaN NaN NaN 79.779 1 79.29 78.79 79.79 -0.48932 0 0 0 0.82015 1 43698 43698 5.2307 1.2863 1 + 81892 23759 54841 55984 95291 95291 -0.017008172084388207 YYYRRAHQL 9 Unmodified _YYYRRAHQL_ 0 0 0 ENSG00000094880|ENST00000394886|CDC23;nc|ENSG00000094880|Q9UJX2-3|CDC23;ENST00000471692.1_1_5:137527956-137534147:-|nuORF ENSG00000094880|ENST00000394886|CDC23 ENSG00000094880|ENST00000394886|CDC23 MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 423.8880615234375 3 423.887756 1268.64144 0.075248 3.1897E-05 0.77441 0.00032826 0.84966 0.00036016 424.222243670749 17.937 0.11314 17.944 17.886 17.999 0.0060463 16 8 2 0 0 0 0.42049 1 9073 9073 11.495 4.0176 1 1749800 81893 1638 54842 55985 95292 95292 0.017864437230400654 YYYRRRHRHER 11 Unmodified _YYYRRRHRHER_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 846.438232421875 2 846.440538 1690.86652 NaN NaN NaN NaN NaN NaN NaN 56.448 1 56.448 55.948 56.948 0 0 0 0 0.9435 1 31396 31396 0 0 1 81894 7989 54843 55986 95293 95293 0.04872366245899684 YYYRRRHRHER 11 Unmodified _YYYRRRHRHER_ 0 0 0 ENST00000507405.5_1_5:138755893-138773164:-|nuORF;ENSG00000170464|ENST00000302060|DNAJC18 ENST00000507405.5_1_5:138755893-138773164:-|nuORF ENST00000507405.5_1_5:138755893-138773164:-|nuORF MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 846.436767578125 2 846.440538 1690.86652 NaN NaN NaN NaN NaN NaN NaN 98.573 1 98.38 97.88 98.88 -0.19321 0 0 0 0.9435 1 53830 53830 0 0 1 81895 7989 54843 55986 95294 95294 0.04872366245899684 YYYVGFAYL 9 Unmodified _YYYVGFAYL_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 579.7799072265625 2 579.778951 1157.54335 0.42025 0.00024365 0.83263 0.00048274 1.2529 0.00072639 579.7794600028881 94.503 0.28837 94.082 93.89 94.178 -0.42043 27 15 2 0 0 0 0.46577 1 51609 51609 9.3474 4.1168 1 544230 81896 1759 54844 55987 95295 95295 -0.029121776455212967 YYYVGFAYL 9 Unmodified _YYYVGFAYL_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn3 3 579.7791748046875 2 579.778951 1157.54335 2.3117 0.0013403 0.46394 0.00026898 2.7757 0.0016093 579.7790430943768 93.96 0.39947 93.975 93.785 94.184 0.014244 51 15 5 0 0 0 0.1492 1 52201 52201 28.173 13.592 1 11178000 81897 1759 54844 55987 95296 95296 -0.029121776455212967 YYYVGFAYL 9 Unmodified _YYYVGFAYL_ 0 0 0 ENSG00000100129|ENST00000652021|EIF3L;nc|ENSG00000100129|Q9Y262-2|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF ENSG00000100129|ENST00000652021|EIF3L ENSG00000100129|ENST00000652021|EIF3L MULTI-MSMS AL20221201_MKP_PDAC_01 4 580.2820434570312 2 579.778951 1157.54335 1.3715 0.00079519 0.21255 0.00012323 1.5841 0.00091843 579.7789424901307 100.1 0.17615 93.925 93.838 94.014 -6.1757 29 10 4 0 0 0 0.1492 1 66838 66838 28.173 13.592 1 111180000 81898 1759 54844 55987 95297 95297 -0.029121776455212967 YYYYCRFRWRC 11 Unmodified _YYYYCRFRWRC_ 0 0 0 REV__ENSG00000105609|ENST00000449561|LILRB5 REV__ENSG00000105609|ENST00000449561|LILRB5 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 839.87060546875 2 839.87393 1677.73331 NaN NaN NaN NaN NaN NaN NaN 78.318 1 78.318 77.818 78.818 0 0 0 0 0.94301 1 43525 43525 0.35063 0.35063 1 + 81899 18438 54845 55988 95298 95298 -0.07844957246470585 YYYYEDTS 8 Unmodified _YYYYEDTS_ 0 0 0 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 REV__nc|ENSG00000133657|Q9H7F0|ATP13A3 MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn2 2 552.2136840820312 2 552.213837 1102.41312 NaN NaN NaN NaN NaN NaN NaN 7.7757 1 7.6842 7.1842 8.1842 -0.09156 0 0 0 0.97444 1 3820 3820 0 0 1 + 81900 19930 54846 55989 95299 95299 -0.13398818435166504 YYYYNGDF 8 Unmodified _YYYYNGDF_ 0 0 0 REV__nc|ENSG00000138119|Q9NZM1-5|MYOF REV__nc|ENSG00000138119|Q9NZM1-5|MYOF MULTI-MSMS AL20210827_EV_HLA_PDAC_PANFRO413_2D_50e6_W632_classI_fxn1 1 368.8149719238281 3 368.815152 1103.42363 -0.57256 -0.00021117 0.68371 0.00025216 0.11116 4.0997E-05 368.81522995651613 34.855 0.80017 34.855 34.289 35.09 0 75 41 2 0 0 0 0.75262 1 18279 18279 13.906 3.7555 1 6687200 + 81901 20306 54847 55990 95300 95300 -0.1239479099010623 YYYYQSANS 9 Unmodified _YYYYQSANS_ 0 0 0 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 ENSG00000165156|ENST00000395571|ZHX1 MSMS AL20221201_MKP_PDAC_01 4 386.828369140625 3 386.829461 1157.46655 NaN NaN NaN NaN NaN NaN NaN 33.069 1 29.213 28.713 29.713 -3.8562 0 0 0 0.77016 1 18933 18933 7.1017 0 1 81902 7300 54848 55991 95301 95301 -0.10588020932664222